75 3299 84 3 2 chr9 3000002 3038419 -121037753 - GSAT_MM Satellite Satellite -1 38451 1 1 608 2435 80 88 21 chr9 3055852 3056237 -121019935 - IAPLTR2a LTR ERVK 0 411 1 2 608 21 36 0 0 chr9 3077879 3077907 -120998265 + AT_rich Low_complexity Low_complexity 1 28 0 3 608 381 188 0 0 chr9 3079099 3079179 -120996993 + CT-rich Low_complexity Low_complexity 3 82 0 4 608 2147 100 18 30 chr9 3079394 3079723 -120996449 + IAPLTR2b LTR ERVK 1 325 -2 5 608 24451 52 25 18 chr9 3079723 3082776 -120993396 + IAPEz-int LTR ERVK 3 3076 -3405 5 608 6674 60 12 18 chr9 3082762 3083617 -120992555 + IAPEz-int LTR ERVK 5630 6479 -2 5 608 2147 100 18 30 chr9 3083619 3083948 -120992224 + IAPLTR2b LTR ERVK 1 325 -2 5 608 2325 140 2 30 chr9 3084293 3084691 -120991481 - Lx5 LINE L1 -952 6098 5712 6 608 999 202 113 21 chr9 3084692 3084930 -120991242 + Lx5 LINE L1 6791 7050 0 7 608 1355 88 22 0 chr9 3084972 3085154 -120991018 - B2_Mm2 SINE B2 -8 187 2 8 608 28 0 0 0 chr9 3085154 3085182 -120990990 + AT_rich Low_complexity Low_complexity 1 28 0 9 608 273 316 38 0 chr9 3085663 3085742 -120990430 + MIRc SINE MIR 179 260 -8 1 608 306 355 60 45 chr9 3087109 3087551 -120988621 - L2a LINE L2 -27 3399 2930 1 608 303 315 61 63 chr9 3087874 3088017 -120988155 + MTEb LTR MaLR 44 169 -198 1 608 255 227 0 0 chr9 3088017 3088083 -120988089 + C-rich Low_complexity Low_complexity 5 70 0 1 608 349 265 20 10 chr9 3088163 3088262 -120987910 + MTEb LTR MaLR 277 376 -3 1 608 1963 150 3 58 chr9 3088790 3089136 -120987036 + ORR1A4 LTR MaLR 1 327 -2 1 608 338 297 67 122 chr9 3089147 3089327 -120986845 + MTE2a LTR MaLR 1 170 -209 1 608 2130 193 79 11 chr9 3089347 3089792 -120986380 + L1Md_F LINE L1 328 802 -5717 1 608 506 250 12 47 chr9 3089849 3090083 -120986089 + RLTR10A LTR ERVK 147 411 0 1 608 440 202 58 50 chr9 3090099 3090219 -120985953 + RLTR10-int LTR ERVK 318 438 -1549 1 608 440 331 70 30 chr9 3090623 3090925 -120985247 + IAP-d-int LTR ERVK 4894 5207 -1335 1 608 796 165 24 7 chr9 3091151 3091305 -120984867 + RLTR45-int LTR ERVK 6928 7042 -202 1 608 503 261 193 50 chr9 3091341 3091579 -120984593 + RLTR10A LTR ERVK 140 411 0 1 608 9010 109 16 0 chr9 3091579 3093189 -120982983 + L1Md_F LINE L1 918 2555 -3328 2 608 3534 93 2 6 chr9 3093175 3093800 -120982372 + L1Md_F LINE L1 746 1372 -4511 2 608 265 362 42 21 chr9 3093873 3094062 -120982110 + Tigger15a DNA TcMar 50 242 -473 2 608 225 316 0 38 chr9 3094580 3094659 -120981513 + Tigger15a DNA TcMar 640 715 0 2 608 378 321 64 7 chr9 3096550 3096691 -120979481 + B1F SINE Alu 1 149 0 2 608 435 303 8 0 chr9 3096570 3096692 -120979480 + ID_B1 SINE B4 102 224 0 2 608 394 302 99 12 chr9 3097787 3097958 -120978214 - MIR SINE MIR 0 262 77 2 608 345 100 0 0 chr9 3098581 3098631 -120977541 + (A)n Simple_repeat Simple_repeat 1 50 0 2 608 871 270 154 10 chr9 3100146 3100535 -120975637 - L1MA9 LINE L1 0 6312 5868 2 608 534 133 0 0 chr9 3100618 3100708 -120975464 + (GGA)n Simple_repeat Simple_repeat 2 91 0 2 608 2620 151 42 5 chr9 3100898 3101324 -120974848 - Lx4A LINE L1 -110 6948 6507 2 608 1125 218 173 22 chr9 3101731 3101898 -120974274 - MTEa LTR MaLR -3 376 189 2 608 450 0 0 0 chr9 3101898 3101948 -120974224 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 608 1125 218 173 22 chr9 3101948 3102103 -120974069 - MTEa LTR MaLR -191 188 5 2 608 413 247 11 0 chr9 3103205 3103294 -120972878 + MER5B DNA MER1_type 82 171 -7 3 608 287 368 75 27 chr9 3103444 3103631 -120972541 + MER21B LTR ERV1 546 741 -122 3 608 426 293 52 114 chr9 3103823 3104131 -120972041 + B4A SINE B4 2 290 -2 3 608 204 40 0 0 chr9 3104179 3104204 -120971968 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 608 529 292 8 0 chr9 3104362 3104492 -120971680 - MER5B DNA MER1_type -7 171 41 3 608 1108 91 0 0 chr9 3104494 3104637 -120971535 + B1_Mus1 SINE Alu 1 143 -5 3 608 240 68 0 83 chr9 3104653 3104701 -120971471 + B1_Mus2 SINE Alu 104 147 0 3 608 1110 242 12 8 chr9 3104720 3104966 -120971206 + Lx6 LINE L1 7185 7431 -29 3 608 755 66 9 0 chr9 3104966 3105072 -120971100 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 3 608 213 158 53 0 chr9 3105072 3105110 -120971062 + (TGGG)n Simple_repeat Simple_repeat 4 43 0 4 608 420 20 0 0 chr9 3105112 3105161 -120971011 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 608 182 186 44 44 chr9 3106077 3106122 -120970050 + L2 LINE L2 1852 1896 -1523 4 608 436 304 0 0 chr9 3106401 3106503 -120969669 + PB1D10 SINE Alu 7 108 -9 4 608 288 280 78 29 chr9 3106907 3107010 -120969162 - MER53 DNA hAT -85 108 1 4 608 25 65 0 0 chr9 3107124 3107170 -120969002 + AT_rich Low_complexity Low_complexity 1 46 0 4 608 4633 192 62 2 chr9 3107234 3107742 -120968430 - Lx9 LINE L1 -135 7509 6992 4 608 477 50 0 0 chr9 3107742 3107802 -120968370 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 4 608 4633 192 62 2 chr9 3107802 3108208 -120967964 - Lx9 LINE L1 -653 6991 6541 4 608 258 346 79 30 chr9 3108361 3108525 -120967647 - MER21B LTR ERV1 -211 652 481 4 608 270 139 24 122 chr9 3108522 3108574 -120967598 - MLT2B5 LTR ERVL -6 549 505 4 608 973 63 22 39 chr9 3108574 3108755 -120967417 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 5 608 270 139 24 122 chr9 3108755 3108784 -120967388 - MLT2B5 LTR ERVL -51 504 476 4 608 258 32 0 0 chr9 3108785 3108816 -120967356 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 5 608 975 79 11 43 chr9 3108817 3109002 -120967170 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 5 608 914 327 98 49 chr9 3109038 3109091 -120967081 - MLT2B3 LTR ERVL -25 692 639 5 608 182 65 65 0 chr9 3109091 3109122 -120967050 + (CATA)n Simple_repeat Simple_repeat 2 34 0 5 608 1328 328 92 46 chr9 3109122 3109613 -120966559 - MLT2B3 LTR ERVL -79 638 117 5 608 252 0 0 0 chr9 3109636 3109664 -120966508 + (A)n Simple_repeat Simple_repeat 1 28 0 5 608 479 286 81 22 chr9 3110099 3110235 -120965937 + B4A SINE B4 137 280 -12 5 608 2960 101 20 5 chr9 3110737 3111176 -120964996 - Lx LINE L1 -8 6646 6201 5 608 1178 297 19 9 chr9 3111251 3111567 -120964605 + MLT1A0 LTR MaLR 47 365 0 5 608 378 319 80 0 chr9 3111598 3111711 -120964461 + MER58B DNA MER1_type 215 336 -5 5 608 882 88 0 0 chr9 3111853 3111978 -120964194 + (GAAA)n Simple_repeat Simple_repeat 3 127 0 6 608 585 256 101 17 chr9 3112037 3112216 -120963956 + B4A SINE B4 1 194 -98 6 608 790 241 124 41 chr9 3114549 3114887 -120961285 - L1MA6 LINE L1 0 6300 5935 6 608 842 228 116 50 chr9 3114927 3115204 -120960968 - MTEb LTR MaLR -2 377 83 6 608 257 238 90 27 chr9 3115590 3115730 -120960442 - L1M5 LINE L1 -844 5459 5312 6 608 34903 77 9 21 chr9 3116325 3121573 -120954599 + L1Md_F3 LINE L1 422 5586 -297 6 608 7900 54 16 0 chr9 3121573 3122554 -120953618 + L1Md_F3 LINE L1 5587 6583 -1 6 608 6867 60 7 20 chr9 3122760 3123659 -120952513 - L1Md_F2 LINE L1 -2 6580 5694 6 608 310 267 98 19 chr9 3123656 3123810 -120952362 - L1M2 LINE L1 -642 5658 5491 6 608 1013 122 0 45 chr9 3123810 3123965 -120952207 - B1_Mus1 SINE Alu 0 148 1 6 608 270 266 102 19 chr9 3123965 3123979 -120952193 - L1M2 LINE L1 -678 5490 5477 6 608 303 71 0 0 chr9 3123980 3124022 -120952150 + (T)n Simple_repeat Simple_repeat 1 42 0 6 608 1744 153 0 88 chr9 3124207 3124368 -120951804 - MERVK26-int LTR ERVK -6 6913 6755 7 608 2838 133 29 8 chr9 3124368 3124844 -120951328 + Lx2 LINE L1 6511 6996 -1 7 608 1744 153 0 88 chr9 3124844 3124990 -120951182 - MERVK26-int LTR ERVK -165 6754 6633 7 608 533 202 24 98 chr9 3124990 3125113 -120951059 - B3 SINE B2 -44 172 48 7 608 6818 39 34 2 chr9 3125113 3125582 -120950590 - RLTR10-int LTR ERVK -154 1833 1348 7 608 419 0 20 0 chr9 3125582 3125633 -120950539 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 608 6818 39 34 2 chr9 3125633 3125981 -120950191 - RLTR10-int LTR ERVK -640 1347 991 7 608 490 344 18 18 chr9 3126129 3126455 -120949717 - RLTR10-int LTR ERVK -5479 1063 738 7 608 4295 73 178 137 chr9 3126509 3127426 -120948746 - RLTR10-int LTR ERVK -993 994 41 7 608 2980 46 52 0 chr9 3127438 3127807 -120948365 - RLTR10 LTR ERVK -2 388 1 7 608 270 241 0 25 chr9 3127808 3127889 -120948283 + Lx6 LINE L1 7356 7434 -26 7 608 540 68 0 0 chr9 3128002 3128075 -120948097 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 608 534 239 0 0 chr9 3128711 3128845 -120947327 + CT-rich Low_complexity Low_complexity 2 135 0 7 608 641 275 68 40 chr9 3128849 3129099 -120947073 - MER34A1 LTR ERV1 -108 479 223 8 608 961 174 30 10 chr9 3129449 3129646 -120946526 - RLTR41 LTR ERV1 0 446 246 8 608 5324 68 15 0 chr9 3130913 3131591 -120944581 - L1_Mus2 LINE L1 -2 6564 5877 8 608 395 278 34 28 chr9 3131894 3132122 -120944050 + L1M3 LINE L1 4848 5073 -774 8 608 236 281 115 15 chr9 3132154 3132284 -120943888 + L1M3 LINE L1 5461 5603 -709 8 608 2963 120 15 7 chr9 3132287 3132884 -120943288 + L1_Mus3 LINE L1 6174 6638 0 8 608 343 260 19 9 chr9 3133400 3133505 -120942667 + PB1D10 SINE Alu 11 116 -1 8 608 3761 100 0 0 chr9 3134082 3134581 -120941591 - L1_Mus2 LINE L1 -7 6559 6061 8 608 455 250 7 0 chr9 3135943 3136018 -120940154 + polypyrimidine Low_complexity Low_complexity 71 145 0 8 608 1296 84 0 0 chr9 3136018 3136197 -120939975 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 8 608 455 250 7 0 chr9 3136197 3136261 -120939911 + polypyrimidine Low_complexity Low_complexity 6 70 0 8 608 300 361 0 0 chr9 3137379 3137487 -120938685 + RSINE1 SINE B4 11 118 -47 9 608 315 298 85 0 chr9 3139235 3139329 -120936843 - B1_Mur1 SINE Alu -26 123 22 9 608 551 15 15 0 chr9 3140006 3140074 -120936098 + (TC)n Simple_repeat Simple_repeat 2 70 0 9 608 279 241 0 0 chr9 3140172 3140226 -120935946 - ID SINE ID -170 54 1 9 608 260 127 46 31 chr9 3140732 3140797 -120935375 + A-rich Low_complexity Low_complexity 1 66 0 9 608 2426 85 86 46 chr9 3141504 3141899 -120934273 + IAPLTR2a LTR ERVK 1 411 0 9 608 993 122 25 86 chr9 3141900 3142098 -120934074 + IAPEz-int LTR ERVK 9 194 -6287 9 608 226 267 0 0 chr9 3142107 3142152 -120934020 + RLTR27 LTR ERVK 231 275 -34 9 608 3631 61 4 16 chr9 3142152 3142730 -120933442 + IAPEz-int LTR ERVK 168 662 -5819 9 608 2716 73 0 3 chr9 3142730 3143073 -120933099 + IAPEz-int LTR ERVK 1359 1700 -4781 9 608 7011 40 4 11 chr9 3143066 3143901 -120932271 + IAPEz-int LTR ERVK 5651 6479 -2 9 608 2396 106 90 0 chr9 3143903 3144280 -120931892 + IAPLTR2a LTR ERVK 1 411 0 9 608 4565 130 20 28 chr9 3144478 3145294 -120930878 - RMER17D2 LTR ERVK 0 809 1 9 609 36090 44 0 4 chr9 3145749 3151010 -120925162 + L1Md_T LINE L1 253 5589 -297 9 609 8604 34 0 0 chr9 3151010 3152005 -120924167 + L1Md_T LINE L1 5590 6584 -1 9 609 482 0 17 0 chr9 3152739 3152797 -120923375 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 9 609 884 131 8 0 chr9 3152799 3152929 -120923243 - B1_Mm SINE Alu -12 135 5 1 609 1137 80 17 0 chr9 3152945 3153120 -120923052 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1 609 234 0 0 0 chr9 3153121 3153147 -120923025 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1 609 198 0 0 0 chr9 3153156 3153178 -120922994 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 609 1041 109 0 26 chr9 3153178 3153320 -120922852 - B1_Mus2 SINE Alu -6 141 1 1 609 8424 124 53 16 chr9 3153608 3155803 -120920369 + MuRRS4-int LTR ERV1 1799 4271 -792 1 609 711 228 135 5 chr9 3155794 3156001 -120920171 + MuRRS4-int LTR ERV1 4788 5021 -42 1 609 3032 79 120 18 chr9 3156002 3156503 -120919669 + LTRIS2 LTR ERV1 1 552 -12 1 609 442 226 5 0 chr9 3158387 3158514 -120917658 + MMVL30-int LTR ERV1 1694 1785 -1913 1 609 4132 249 42 44 chr9 3158540 3160116 -120916056 + MMVL30-int LTR ERV1 2877 5230 -2326 1 609 290 257 219 7 chr9 3160108 3160245 -120915927 + RLTR6-int LTR ERV1 7613 7778 0 1 609 2614 96 5 15 chr9 3160822 3160942 -120915230 + MTB LTR MaLR 1 117 -283 1 609 2849 103 5 2 chr9 3160942 3161341 -120914831 + MTB LTR MaLR 1 400 0 1 609 2614 96 5 15 chr9 3161341 3161624 -120914548 + MTB LTR MaLR 118 400 0 1 609 2097 93 80 0 chr9 3161641 3161941 -120914231 - ORR1A2 LTR MaLR 0 327 4 1 609 1350 301 93 54 chr9 3162277 3162887 -120913285 + MTE-int LTR MaLR 920 1553 -27 1 609 36395 11 0 5 chr9 3163211 3168859 -120907313 - L1Md_A LINE L1 0 6582 976 1 609 39775 35 0 0 chr9 3168861 3174274 -120901898 - L1Md_T LINE L1 0 6582 1170 1 609 5716 152 34 40 chr9 3174280 3175394 -120900778 - L1Md_T LINE L1 -5411 1205 99 1 609 844 222 5 10 chr9 3175395 3175595 -120900577 - L1Md_F LINE L1 -6316 203 5 1 609 6319 23 11 1 chr9 3175594 3176337 -120899835 - L1Md_A LINE L1 -5731 993 244 1 609 230 267 26 13 chr9 3176680 3176756 -120899416 + MIRm SINE MIR 96 172 -104 1 609 260 275 101 0 chr9 3178414 3178523 -120897649 + MLT1J LTR MaLR 59 178 -334 1 609 183 204 0 0 chr9 3178840 3178884 -120897288 + (ATG)n Simple_repeat Simple_repeat 3 46 0 1 609 236 232 0 0 chr9 3178914 3178970 -120897202 - PB1D10 SINE Alu -61 56 1 1 609 187 277 15 0 chr9 3178977 3179042 -120897130 - MIRc SINE MIR -28 240 175 1 609 362 275 48 0 chr9 3179097 3179241 -120896931 + ORR1E LTR MaLR 6 162 -208 1 609 440 297 102 0 chr9 3179962 3180090 -120896082 - ID_B1 SINE B4 -5 219 79 1 609 304 233 114 19 chr9 3181400 3181505 -120894667 + B3 SINE B2 100 214 -2 1 609 1906 151 81 8 chr9 3181736 3182096 -120894076 - ORR1B1 LTR MaLR -8 386 1 1 609 431 274 70 45 chr9 3182203 3182319 -120893853 + L1M5 LINE L1 3364 3484 -2662 1 609 5331 172 37 17 chr9 3182319 3183322 -120892850 + RLTR13D2 LTR ERVK 1 1023 0 1 609 431 274 70 45 chr9 3183322 3183404 -120892768 + L1M5 LINE L1 3485 3567 -2579 1 609 351 0 0 0 chr9 3183469 3183508 -120892664 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 609 482 292 21 0 chr9 3183628 3183772 -120892400 + B1F2 SINE Alu 1 147 -2 1 609 2261 160 66 56 chr9 3185429 3185931 -120890241 + RMER15 LTR ERVL 12 518 -57 1 609 183 154 0 44 chr9 3188625 3188693 -120887479 + T-rich Low_complexity Low_complexity 2 66 0 1 609 324 301 90 74 chr9 3188708 3189031 -120887141 - L1MCa LINE L1 -5031 1477 1150 1 609 750 158 234 23 chr9 3191013 3191188 -120884984 + B3 SINE B2 5 216 0 1 609 326 292 86 21 chr9 3191440 3191453 -120884719 + ID_B1 SINE B4 76 161 -63 1 609 541 192 108 0 chr9 3191453 3191573 -120884599 + B1_Mus1 SINE Alu 9 141 -7 1 609 839 252 19 19 chr9 3191864 3192074 -120884098 - B3 SINE B2 -6 210 1 1 609 627 292 26 0 chr9 3192128 3192323 -120883849 + ID_B1 SINE B4 1 200 -24 1 609 240 167 24 0 chr9 3193167 3193209 -120882963 + B4A SINE B4 159 201 -91 1 609 579 275 7 0 chr9 3193411 3193553 -120882619 + B3 SINE B2 2 144 -72 1 609 552 263 16 1 chr9 3195148 3195288 -120880884 + B1_Mur3 SINE Alu 2 142 -8 1 609 663 181 22 0 chr9 3195598 3195736 -120880436 - B1_Mur2 SINE Alu 0 149 9 1 609 660 219 32 20 chr9 3195748 3195934 -120880238 - B3 SINE B2 -4 191 2 1 609 273 287 80 60 chr9 3196535 3196635 -120879537 - B1F2 SINE Alu -26 123 22 1 609 597 225 71 21 chr9 3196786 3196927 -120879245 - B1_Mur1 SINE Alu 0 149 2 1 609 224 149 0 21 chr9 3197139 3197187 -120878985 + CT-rich Low_complexity Low_complexity 2 48 0 1 609 1776 148 68 26 chr9 3197191 3197531 -120878641 - ORR1B2 LTR MaLR -8 359 6 1 609 1304 48 0 6 chr9 3197544 3197713 -120878459 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 1 609 597 248 0 0 chr9 3197713 3197846 -120878326 - B1_Mur2 SINE Alu -12 137 5 1 609 418 146 22 22 chr9 3197968 3198059 -120878113 + GA-rich Low_complexity Low_complexity 2 92 0 1 609 794 274 161 12 chr9 3198059 3198381 -120877791 + MTD LTR MaLR 50 419 0 1 609 220 279 16 0 chr9 3198583 3198644 -120877528 - BC1_Mm scRNA scRNA -69 83 22 1 609 366 212 35 0 chr9 3199120 3199205 -120876967 - B3 SINE B2 -126 90 3 1 609 536 173 118 0 chr9 3201104 3201214 -120874958 - B3 SINE B2 -93 123 1 1 609 25 0 0 0 chr9 3201346 3201371 -120874801 + AT_rich Low_complexity Low_complexity 1 25 0 1 609 463 315 0 23 chr9 3201799 3201882 -120874290 + ID_B1 SINE B4 82 164 -60 1 609 261 0 0 0 chr9 3201882 3201911 -120874261 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 609 735 72 0 0 chr9 3201911 3202021 -120874151 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 609 463 315 0 23 chr9 3202021 3202066 -120874106 + ID_B1 SINE B4 165 207 -17 1 609 321 26 0 0 chr9 3202073 3202111 -120874061 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 609 243 81 0 0 chr9 3202303 3202340 -120873832 + B3A SINE B2 3 39 -159 1 609 397 262 97 0 chr9 3202342 3202445 -120873727 + PB1D9 SINE Alu 2 114 -6 1 609 8514 40 4 0 chr9 3202445 3203992 -120872180 - L1Md_F2 LINE L1 -14 6568 5015 1 609 288 0 0 0 chr9 3204020 3204052 -120872120 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 609 600 290 11 6 chr9 3204054 3204231 -120871941 + B3 SINE B2 30 207 -9 1 609 443 252 9 9 chr9 3204368 3204476 -120871696 + PB1D10 SINE Alu 1 108 -9 1 609 213 108 0 0 chr9 3204531 3204568 -120871604 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 609 282 56 0 0 chr9 3204603 3204639 -120871533 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 1 609 11018 153 8 6 chr9 3204651 3207277 -120868895 - Lx LINE L1 -2 6652 4014 1 609 481 265 143 87 chr9 3207275 3207696 -120868476 + L1M4 LINE L1 5335 5778 -464 1 609 595 205 92 18 chr9 3207700 3207864 -120868308 + B2_Mm2 SINE B2 2 177 -18 1 609 200 35 35 0 chr9 3207920 3207949 -120868223 + (TAAAAA)n Simple_repeat Simple_repeat 6 35 0 1 609 1071 90 14 0 chr9 3208044 3208189 -120867983 + B1_Mm SINE Alu 1 147 0 1 609 520 267 30 0 chr9 3208674 3208809 -120867363 + RSINE1 SINE B4 10 148 -17 1 609 585 61 0 0 chr9 3208814 3208896 -120867276 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 609 215 299 0 82 chr9 3209603 3209676 -120866496 + ID4_ SINE ID 1 67 -16 1 609 241 341 0 43 chr9 3209898 3209990 -120866182 - PB1 SINE Alu -3 124 37 1 609 389 228 48 19 chr9 3210142 3210245 -120865927 + B1F SINE Alu 15 120 -29 1 609 452 257 17 17 chr9 3210443 3210558 -120865614 + PB1D7 SINE Alu 5 119 -1 1 609 22 0 0 0 chr9 3210972 3210994 -120865178 + AT_rich Low_complexity Low_complexity 1 22 0 1 609 728 240 29 34 chr9 3211878 3212085 -120864087 + B3 SINE B2 1 206 -10 1 609 270 254 0 53 chr9 3213535 3213610 -120862562 + ID4 SINE ID 11 81 -2 1 609 203 132 53 0 chr9 3214382 3214420 -120861752 + GA-rich Low_complexity Low_complexity 2 41 0 1 609 390 252 122 0 chr9 3214615 3214722 -120861450 + PB1D7 SINE Alu 1 120 0 1 609 2333 105 84 115 chr9 3215339 3215836 -120860336 + RLTR45 LTR ERVK 1 482 0 1 609 377 266 30 42 chr9 3216224 3216389 -120859783 - RNLTR23 LTR ERVK 0 642 480 1 609 279 164 0 35 chr9 3217630 3217687 -120858485 + B1_Mur1 SINE Alu 67 121 -28 1 609 180 77 0 0 chr9 3217705 3217731 -120858441 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 609 597 14 0 0 chr9 3218055 3218125 -120858047 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 609 286 158 0 0 chr9 3218225 3218282 -120857890 - MMVL30-int LTR ERV1 -2187 1511 1455 1 609 301 218 0 0 chr9 3218714 3218769 -120857403 - MMVL30-int LTR ERV1 -2245 1453 1399 1 609 316 219 17 110 chr9 3219202 3219320 -120856852 - MMVL30-int LTR ERV1 -2736 962 856 1 609 341 53 0 136 chr9 3219416 3219482 -120856690 - MMVL30-int LTR ERV1 -2870 828 772 1 609 423 0 0 0 chr9 3219898 3219945 -120856227 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 609 2051 144 17 17 chr9 3220742 3221101 -120855071 + RLTR15 LTR ERVK 1 359 0 1 609 1220 268 44 39 chr9 3223270 3223682 -120852490 + BGLII_B LTR ERVK 1 414 -27 1 609 240 59 0 0 chr9 3224014 3224048 -120852124 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 609 1129 53 0 0 chr9 3224048 3224181 -120851991 - B1_Mm SINE Alu -10 137 5 1 609 17554 101 5 0 chr9 3224502 3227751 -120848421 - L1_Mus1 LINE L1 0 6567 3301 1 609 263 266 76 30 chr9 3227822 3227954 -120848218 + L1MC LINE L1 5321 5458 -2424 1 609 233 241 114 57 chr9 3228169 3228292 -120847880 + Lx9 LINE L1 7509 7638 -6 1 609 269 234 0 0 chr9 3228328 3228375 -120847797 + tRNA-Ala-GCY_ tRNA tRNA 16 62 -13 1 609 275 0 38 57 chr9 3231301 3231354 -120844818 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1 609 6031 60 14 3 chr9 3231354 3232120 -120844052 + L1_Mus2 LINE L1 5791 6565 -1 1 609 25 65 0 0 chr9 3232131 3232177 -120843995 + AT_rich Low_complexity Low_complexity 1 46 0 2 609 405 343 21 0 chr9 3233004 3233147 -120843025 - B4A SINE B4 -2 290 145 2 609 4717 210 120 56 chr9 3233735 3234142 -120842030 - RLTR22_Mur LTR ERVK 0 1848 1322 2 609 387 0 0 0 chr9 3234142 3234185 -120841987 + (CATA)n Simple_repeat Simple_repeat 3 45 0 2 609 4717 210 120 56 chr9 3234185 3234578 -120841594 - RLTR22_Mur LTR ERVK -527 1321 950 2 609 3265 24 42 0 chr9 3234578 3234958 -120841214 - MTA_Mm LTR MaLR 0 396 1 2 609 4717 210 120 56 chr9 3234958 3235893 -120840279 - RLTR22_Mur LTR ERVK -899 949 2 2 609 1110 35 0 0 chr9 3237119 3237262 -120838910 - B1_Mus1 SINE Alu 0 148 6 2 609 248 229 8 24 chr9 3237159 3237284 -120838888 - ORR1B1-int LTR MaLR -755 754 632 2 609 33634 105 9 9 chr9 3237295 3243682 -120832490 + L1Md_F3 LINE L1 1 5585 -298 2 609 8365 39 3 2 chr9 3243683 3244680 -120831492 + L1Md_F3 LINE L1 5587 6584 0 2 609 705 159 35 0 chr9 3244747 3244892 -120831280 + RLTR13B1 LTR ERVK 744 893 0 2 609 3517 179 40 15 chr9 3244892 3245645 -120830527 + MYSERV16_I-int LTR ERVK 1536 2325 -1 2 609 630 252 50 72 chr9 3245650 3245927 -120830245 + RLTR20B3 LTR ERVK 21 343 -185 2 609 1272 201 144 27 chr9 3246131 3246500 -120829672 - RLTR22_Mur LTR ERVK -11 1837 1426 2 609 940 208 79 36 chr9 3246494 3246621 -120829551 - RMER12 LTR ERVK -407 915 769 2 609 1098 60 0 0 chr9 3246621 3246772 -120829400 + (TGGA)n Simple_repeat Simple_repeat 1 151 0 2 609 940 208 79 36 chr9 3246772 3246923 -120829249 - RMER12 LTR ERVK -554 768 626 2 609 7455 87 57 14 chr9 3246923 3247994 -120828178 - ETnERV2-int LTR ERVK -6115 1291 175 2 609 1144 141 0 21 chr9 3248260 3248448 -120827724 - ETnERV2-int LTR ERVK -5622 186 3 2 609 5240 114 33 25 chr9 3248450 3249298 -120826874 - RLTR13A LTR ERVK 0 855 1 2 609 254 346 0 0 chr9 3249827 3249908 -120826264 + B1_Mus2 SINE Alu 67 147 0 2 609 1596 42 0 10 chr9 3249910 3250103 -120826069 + B2_Mm1t SINE B2 2 192 -1 2 609 201 224 0 0 chr9 3250111 3250169 -120826003 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 2 609 288 53 0 0 chr9 3250295 3250333 -120825839 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 609 395 273 29 83 chr9 3251079 3251183 -120824989 - B2_Mm2 SINE B2 -2 193 101 2 609 2712 95 51 5 chr9 3251183 3251576 -120824596 - RLTR10A LTR ERVK 0 411 1 2 609 395 273 29 83 chr9 3251576 3251675 -120824497 - B2_Mm2 SINE B2 -95 100 2 2 609 841 197 45 22 chr9 3251693 3251916 -120824256 + RLTR11A LTR ERVK 301 528 0 2 609 22 35 0 0 chr9 3252060 3252089 -120824083 + AT_rich Low_complexity Low_complexity 1 29 0 2 609 258 321 46 0 chr9 3253392 3253495 -120822677 - B1_Mur3 SINE Alu -42 107 1 2 609 259 265 0 32 chr9 3254059 3254205 -120821967 + B3 SINE B2 5 204 -12 2 609 189 0 0 0 chr9 3255050 3255071 -120821101 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 609 393 22 0 0 chr9 3255071 3255116 -120821056 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 609 201 196 0 0 chr9 3255459 3255505 -120820667 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 2 609 213 132 14 56 chr9 3255928 3256000 -120820172 + A-rich Low_complexity Low_complexity 4 72 0 2 609 186 43 0 0 chr9 3257037 3257060 -120819112 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 2 609 1842 248 25 38 chr9 3257313 3257786 -120818386 - LSU-rRNA_Hsa rRNA rRNA -1 5034 4568 2 609 3622 211 18 18 chr9 3257783 3258515 -120817657 - LSU-rRNA_Hsa rRNA rRNA -674 4361 3630 2 609 1332 228 20 0 chr9 3258511 3258766 -120817406 - LSU-rRNA_Hsa rRNA rRNA -2534 2501 2242 2 609 3739 211 4 29 chr9 3258789 3259525 -120816647 - LSU-rRNA_Hsa rRNA rRNA -2984 2051 1334 2 609 4953 196 8 20 chr9 3260247 3261149 -120815023 - SSU-rRNA_Hsa rRNA rRNA 0 1869 979 2 609 315 0 0 0 chr9 3261708 3261743 -120814429 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 609 333 47 0 0 chr9 3261850 3261893 -120814279 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 609 281 310 25 128 chr9 3262442 3262638 -120813534 - FordPrefect DNA Tip100 -728 955 780 2 609 197 119 24 0 chr9 3262878 3262920 -120813252 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 609 201 74 0 0 chr9 3263788 3263815 -120812357 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 609 268 241 133 9 chr9 3264524 3264639 -120811533 - PB1D10 SINE Alu 0 120 5 2 609 374 255 0 21 chr9 3264581 3264677 -120811495 - ID_B1 SINE B4 -81 143 50 2 609 221 163 20 0 chr9 3264770 3264819 -120811353 + CT-rich Low_complexity Low_complexity 2 51 0 2 609 339 130 0 0 chr9 3264926 3264980 -120811192 + (CACCAT)n Simple_repeat Simple_repeat 1 54 0 2 609 236 294 0 56 chr9 3266028 3266118 -120810054 + MurSatRep1 Unknown Unknown 182 266 -1871 2 609 329 194 16 0 chr9 3266375 3266437 -120809735 + RLTR42-int LTR ERVK 1699 1761 -3761 2 609 503 239 48 66 chr9 3267473 3267639 -120808533 - RMER19B LTR ERVK -401 501 339 2 609 437 274 25 0 chr9 3267696 3267828 -120808344 - RMER19B LTR ERVK -553 184 56 2 609 269 236 8 124 chr9 3267936 3268057 -120808115 + RMER17C-int LTR ERVK 418 524 -2714 2 609 888 306 28 49 chr9 3268021 3268447 -120807725 + RodERV21-int LTR ERV1 715 1131 -3860 2 609 707 296 41 77 chr9 3268477 3268840 -120807332 + RodERV21-int LTR ERV1 1107 1456 -3535 2 609 964 270 34 13 chr9 3268815 3269048 -120807124 + RodERV21-int LTR ERV1 1377 1614 -3377 2 609 1961 254 81 36 chr9 3269049 3269605 -120806567 + RodERV21-int LTR ERV1 2138 2718 -2273 2 609 371 338 34 21 chr9 3269681 3269914 -120806258 + RodERV21-int LTR ERV1 3839 4074 -3017 2 609 2898 67 51 0 chr9 3270370 3270761 -120805411 - RLTR10A LTR ERVK 0 411 1 2 609 5083 76 25 14 chr9 3270761 3271453 -120804719 - RLTR10-int LTR ERVK -1 1986 1288 2 609 1627 83 5 5 chr9 3271454 3271672 -120804500 - IAP-d-int LTR ERVK -658 5884 5667 2 609 2097 65 89 12 chr9 3271676 3272177 -120803995 - IAP-d-int LTR ERVK -1015 5527 4988 2 609 364 143 0 0 chr9 3272165 3272221 -120803951 - IAP-d-int LTR ERVK -6040 502 447 2 609 495 314 46 30 chr9 3272238 3272515 -120803657 - IAP-d-int LTR ERVK -5479 1063 822 2 609 5064 65 14 67 chr9 3272655 3273383 -120802789 - RLTR10-int LTR ERVK -995 992 304 2 609 2952 67 51 0 chr9 3273385 3273776 -120802396 - RLTR10A LTR ERVK 0 411 1 2 609 303 28 0 0 chr9 3274023 3274059 -120802113 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 609 305 329 34 34 chr9 3274114 3274290 -120801882 + RodERV21-int LTR ERV1 4018 4193 -3413 2 609 274 200 0 48 chr9 3274854 3274917 -120801255 + RodERV21-int LTR ERV1 4890 4949 -2657 2 76 2839 353 39 53 chr9 3275475 3277283 -120798889 + RodERV21-int LTR ERV1 3060 4842 -149 2 610 1025 53 0 8 chr9 3277563 3277697 -120798475 + MTA_Mm LTR MaLR 1 133 -263 2 610 2152 59 55 16 chr9 3277697 3277987 -120798185 - MTA_Mm LTR MaLR 0 396 93 2 610 3038 117 40 25 chr9 3277987 3278462 -120797710 + RLTR45 LTR ERVK 1 482 0 2 610 2152 59 55 16 chr9 3278462 3278483 -120797689 - MTA_Mm LTR MaLR -304 92 73 2 610 3626 100 39 20 chr9 3278483 3279023 -120797149 + RLTR45-int LTR ERVK 22 571 -6673 2 610 1117 49 0 40 chr9 3279778 3279928 -120796244 + RLTR45-int LTR ERVK 549 692 -6552 2 610 1776 60 5 0 chr9 3280284 3280502 -120795670 + RLTR45-int LTR ERVK 692 910 -6334 2 610 761 118 0 0 chr9 3280622 3280741 -120795431 + RLTR45-int LTR ERVK 913 1031 -6213 2 610 277 275 11 11 chr9 3281073 3281165 -120795007 + MMTV-int LTR ERVK 2413 2504 -4749 2 610 7720 140 23 22 chr9 3281527 3283332 -120792840 + RLTR45-int LTR ERVK 6331 7244 0 2 610 2789 106 36 42 chr9 3283332 3283806 -120792366 + RLTR45 LTR ERVK 1 471 -11 2 610 249 57 0 0 chr9 3283872 3283907 -120792265 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 2 610 228 296 277 20 chr9 3284259 3284407 -120791765 + MIR SINE MIR 2 187 -75 2 610 462 49 0 0 chr9 3284983 3285044 -120791128 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 610 384 147 267 36 chr9 3286137 3286247 -120789925 + B1_Mur2 SINE Alu 7 149 0 2 610 1869 171 58 23 chr9 3286665 3287012 -120789160 + RLTR15 LTR ERVK 1 359 0 2 610 1256 263 37 53 chr9 3288062 3288492 -120787680 + BGLII_B LTR ERVK 1 423 -18 2 610 278 65 106 21 chr9 3288516 3288563 -120787609 - tRNA-Lys-AAG tRNA tRNA -23 53 3 2 610 740 220 73 41 chr9 3289588 3289806 -120786366 + RLTR10D LTR ERVK 135 359 0 2 610 866 322 25 14 chr9 3289810 3290169 -120786003 - Lx8 LINE L1 -865 6608 6246 2 610 3356 39 15 10 chr9 3291563 3291953 -120784219 - MTA_Mm LTR MaLR -4 392 1 2 610 1399 53 6 0 chr9 3292154 3292325 -120783847 + RLTR10-int LTR ERVK 3 174 -7407 2 610 280 204 57 114 chr9 3292358 3292463 -120783709 + RLTR10 LTR ERVK 292 390 0 2 610 4460 46 0 0 chr9 3292465 3293083 -120783089 + RLTR10-int LTR ERVK 304 994 -993 2 610 545 297 28 28 chr9 3293276 3293529 -120782643 + RLTR10-int LTR ERVK 1342 1594 -5987 2 610 8465 43 0 2 chr9 3293609 3294608 -120781564 + RLTR10-int LTR ERVK 990 1986 -1 2 610 3223 49 5 42 chr9 3294608 3295010 -120781162 + RLTR10 LTR ERVK 1 387 -3 2 610 180 0 0 0 chr9 3295105 3295125 -120781047 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 610 494 329 91 45 chr9 3295393 3295519 -120780653 - Lx8 LINE L1 0 7473 7341 2 610 423 38 0 0 chr9 3295519 3295572 -120780600 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 610 494 329 91 45 chr9 3295572 3295885 -120780287 - Lx8 LINE L1 -133 7340 7015 2 610 502 236 31 0 chr9 3296079 3296206 -120779966 - MTC LTR MaLR -290 131 1 2 610 1174 352 41 52 chr9 3296246 3297053 -120779119 - RodERV21-int LTR ERV1 -1134 3857 3060 2 610 287 250 0 35 chr9 3297600 3297713 -120778459 - MuLV-int LTR ERV1 -2657 4949 4890 2 610 281 169 41 41 chr9 3298012 3298135 -120778037 + GA-rich Low_complexity Low_complexity 2 124 0 2 610 445 147 51 34 chr9 3298160 3298336 -120777836 + GA-rich Low_complexity Low_complexity 2 180 0 2 610 466 157 101 0 chr9 3298394 3298483 -120777689 - ORR1A1 LTR MaLR -106 240 143 2 610 1834 211 3 16 chr9 3298585 3298952 -120777220 - ETnERV2-int LTR ERVK -1924 5482 5121 2 610 2299 242 27 12 chr9 3299006 3299610 -120776562 - ETnERV2-int LTR ERVK -2873 4533 4083 2 610 2498 101 38 3 chr9 3299616 3299984 -120776188 - IAPEY_LTR LTR ERVK -2 383 3 2 610 394 202 38 9 chr9 3299984 3300089 -120776083 - RMER16-int LTR ERVK -3654 1752 1645 2 610 2825 182 5 22 chr9 3300107 3300698 -120775474 - RMER16-int LTR ERVK -2567 2839 2313 2 610 336 185 0 0 chr9 3300703 3300757 -120775415 - RMER16-int LTR ERVK -3773 1633 1580 2 610 4934 82 0 11 chr9 3300758 3301391 -120774781 - L1Md_F2 LINE L1 -3 6579 5954 2 610 3655 169 21 93 chr9 3301424 3301737 -120774435 - ETnERV2-int LTR ERVK -4712 2694 2404 2 610 3552 38 2 0 chr9 3301737 3302132 -120774040 - MTA_Mm LTR MaLR 0 396 1 2 610 3655 169 21 93 chr9 3302132 3302159 -120774013 - ETnERV2-int LTR ERVK -5003 2403 2393 2 610 1716 32 16 0 chr9 3302159 3302349 -120773823 - B2_Mm1a SINE B2 0 193 1 2 610 3655 169 21 93 chr9 3302349 3302782 -120773390 - ETnERV2-int LTR ERVK -5014 2392 1976 2 610 17373 156 93 44 chr9 3302782 3305004 -120771168 + Lx2 LINE L1 2051 4476 -2521 2 610 238 266 82 95 chr9 3305004 3305162 -120771010 + MLT1E1 LTR MaLR 212 367 -287 2 610 17373 156 93 44 chr9 3305162 3306556 -120769616 + Lx2 LINE L1 4477 6000 -997 2 610 1319 199 28 4 chr9 3306619 3306871 -120769301 + RLTR21 LTR ERVK 1 258 -1314 2 610 675 258 81 47 chr9 3306871 3307107 -120769065 + Lx2B LINE L1 6756 6999 -1 2 610 1258 215 164 20 chr9 3307117 3307568 -120768604 + RLTR21 LTR ERVK 737 1252 -320 2 610 410 261 34 73 chr9 3307626 3307804 -120768368 + RLTR21 LTR ERVK 1056 1226 -346 2 610 448 310 24 24 chr9 3307774 3307982 -120768190 + RLTR21 LTR ERVK 1099 1306 -266 2 610 1074 52 13 13 chr9 3308109 3308264 -120767908 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 2 610 624 161 0 18 chr9 3308307 3308421 -120767751 + ORR1B1 LTR MaLR 41 152 -242 2 610 4358 158 51 58 chr9 3308418 3309321 -120766851 - RMER17B LTR ERVK -61 897 1 2 610 302 234 94 21 chr9 3309546 3309642 -120766530 + RMER15 LTR ERVL 345 447 -128 2 610 360 322 41 0 chr9 3309663 3309784 -120766388 + RMER15 LTR ERVL 396 521 -54 2 610 1637 28 22 0 chr9 3310560 3310742 -120765430 - B2_Mm1t SINE B2 -6 187 2 2 610 15837 141 188 20 chr9 3311028 3312354 -120763818 + MusHAL1 LINE L1 356 1806 -4080 2 610 3071 70 28 8 chr9 3312354 3312742 -120763430 + MTA_Mm LTR MaLR 1 396 0 2 610 15837 148 160 41 chr9 3312742 3313435 -120762737 + MusHAL1 LINE L1 1807 3012 -2874 2 610 1365 51 91 0 chr9 3313435 3313610 -120762562 + B2_Mm2 SINE B2 1 191 -4 2 610 15837 148 160 41 chr9 3313610 3315566 -120760606 + MusHAL1 LINE L1 3013 4853 -1033 2 610 3575 74 4 41 chr9 3315566 3316059 -120760113 - IAPLTR2_Mm LTR ERVK 0 475 1 2 610 15837 148 160 41 chr9 3316059 3316347 -120759825 + MusHAL1 LINE L1 4854 5146 -740 2 610 8172 33 3 0 chr9 3316587 3317495 -120758677 + L1Md_A LINE L1 5672 6582 0 2 610 32663 75 3 5 chr9 3317506 3322720 -120753452 + L1Md_F2 LINE L1 363 5564 -319 3 610 3579 50 2 2 chr9 3322720 3323142 -120753030 + L1Md_F2 LINE L1 6161 6582 0 3 610 32663 78 3 6 chr9 3323142 3323163 -120753009 + L1Md_F2 LINE L1 5565 5585 -298 3 610 8704 43 3 2 chr9 3323165 3324151 -120752021 + L1Md_F2 LINE L1 5588 6574 -8 3 610 525 174 0 0 chr9 3324151 3324249 -120751923 + (TA)n Simple_repeat Simple_repeat 1 98 0 3 610 1145 262 61 39 chr9 3324407 3324737 -120751435 + MTEb LTR MaLR 1 337 -42 3 610 5099 78 2 0 chr9 3324741 3325365 -120750807 + L1_Mus2 LINE L1 5941 6565 -1 3 610 383 280 28 64 chr9 3325477 3325636 -120750536 - MTD LTR MaLR -135 261 103 3 610 2692 189 76 54 chr9 3325649 3326528 -120749644 - L1Md_F LINE L1 -5411 1126 264 3 610 5719 120 22 25 chr9 3327333 3328238 -120747934 - RMER17A2 LTR ERVK -4 902 1 3 610 462 345 35 73 chr9 3328378 3328694 -120747478 + RLTR18 LTR ERVK 7 310 -306 3 610 623 333 9 65 chr9 3328739 3329076 -120747096 + RLTR18B LTR ERVK 186 503 -9 3 610 623 109 20 0 chr9 3329186 3329287 -120746885 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 3 610 374 310 174 32 chr9 3329287 3329477 -120746695 - B4A SINE B4 -47 245 29 3 610 2893 57 3 3 chr9 3329482 3329852 -120746320 + LTRIS5 LTR ERV1 1 370 -77 3 610 2933 170 36 75 chr9 3330619 3331231 -120744941 + L1VL2 LINE L1 66 653 -5682 3 610 1004 184 109 0 chr9 3331271 3331472 -120744700 + URR1B DNA MER1_type 3 225 0 3 610 268 191 0 0 chr9 3331501 3331543 -120744629 - RLTR42-int LTR ERVK -3792 1730 1689 3 610 1253 68 0 0 chr9 3331588 3331734 -120744438 - B1_Mus1 SINE Alu 0 148 3 3 610 4763 10 0 0 chr9 3331813 3332306 -120743866 - MT2_Mm LTR ERVL 0 493 1 3 610 1710 16 5 21 chr9 3332513 3332706 -120743466 - B2_Mm1a SINE B2 -3 190 1 3 610 2192 171 25 51 chr9 3333641 3334090 -120742082 + RMER6B LTR ERVK 1 437 -24 3 610 743 281 51 111 chr9 3334078 3334530 -120741642 - RMER10A LTR ERVL -17 425 1 3 610 1935 199 156 9 chr9 3334707 3335338 -120740834 - Lx9 LINE L1 0 7644 6877 3 610 303 280 45 26 chr9 3336197 3336351 -120739821 - L2a LINE L2 -17 3409 3253 3 610 792 211 139 0 chr9 3336450 3336616 -120739556 - B3 SINE B2 -25 191 3 3 610 354 138 0 0 chr9 3336935 3336993 -120739179 + (TCCCC)n Simple_repeat Simple_repeat 5 62 0 3 610 260 27 27 0 chr9 3337205 3337242 -120738930 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 610 1104 72 0 0 chr9 3337242 3337380 -120738792 - B1_Mus2 SINE Alu -9 138 1 3 610 345 281 25 34 chr9 3337495 3337613 -120738559 + PB1D10 SINE Alu 1 117 0 3 610 306 271 0 23 chr9 3337662 3337749 -120738423 + ID_B1 SINE B4 140 224 0 3 610 21 36 0 0 chr9 3338420 3338448 -120737724 + AT_rich Low_complexity Low_complexity 1 28 0 3 610 3137 196 47 12 chr9 3338680 3339279 -120736893 - Lx5 LINE L1 -7 7043 6424 3 610 330 243 45 45 chr9 3339436 3339548 -120736624 - URR1B DNA MER1_type 0 225 114 3 610 229 298 248 9 chr9 3340146 3340251 -120735921 + MER21B LTR ERV1 118 247 -616 3 610 313 328 61 9 chr9 3340253 3340367 -120735805 - MTEb LTR MaLR 0 379 260 3 610 290 89 69 17 chr9 3340408 3340467 -120735705 - MTC-int LTR MaLR -1182 76 3 3 610 2065 195 37 7 chr9 3340467 3340876 -120735296 - MTC LTR MaLR 0 421 1 3 610 619 227 0 9 chr9 3341481 3341592 -120734580 + B1_Mur3 SINE Alu 2 111 -38 3 610 396 40 0 0 chr9 3341640 3341690 -120734482 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 610 984 80 73 0 chr9 3341814 3341951 -120734221 - B1_Mm SINE Alu 0 147 1 3 610 1567 42 0 5 chr9 3342127 3342317 -120733855 - B2_Mm1t SINE B2 -4 189 1 3 610 26 50 0 0 chr9 3342757 3342797 -120733375 + AT_rich Low_complexity Low_complexity 1 40 0 3 610 334 144 0 0 chr9 3343441 3343504 -120732668 + L1M3 LINE L1 5594 5656 -644 3 610 235 222 167 0 chr9 3343496 3343586 -120732586 - L1_Mur3 LINE L1 -473 5407 5303 3 610 216 0 0 0 chr9 3343611 3343635 -120732537 + (A)n Simple_repeat Simple_repeat 1 24 0 3 610 1036 116 0 7 chr9 3343716 3343863 -120732309 + B1_Mus1 SINE Alu 1 146 -2 3 610 878 230 194 21 chr9 3343878 3344255 -120731917 - L1_Mur3 LINE L1 -1590 4290 3849 3 610 201 74 0 0 chr9 3346140 3346167 -120730005 + (T)n Simple_repeat Simple_repeat 1 27 0 3 610 236 303 0 0 chr9 3346367 3346433 -120729739 - L1MC LINE L1 -2135 5747 5682 3 610 396 104 0 0 chr9 3346771 3346838 -120729334 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 610 612 250 169 0 chr9 3346842 3347014 -120729158 - B4 SINE B4 -11 281 81 3 610 22 80 0 0 chr9 3347136 3347186 -120728986 + AT_rich Low_complexity Low_complexity 1 50 0 3 610 198 103 0 0 chr9 3347633 3347662 -120728510 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 3 610 519 258 91 0 chr9 3347959 3348091 -120728081 - B3 SINE B2 0 216 73 3 610 935 211 46 14 chr9 3348132 3348348 -120727824 - Lx5 LINE L1 -1 7049 6827 3 610 501 44 15 0 chr9 3348369 3348437 -120727735 + B2_Mm1t SINE B2 2 70 -123 3 610 255 61 0 0 chr9 3348748 3348781 -120727391 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 610 2823 58 0 0 chr9 3348942 3349288 -120726884 + ORR1A1 LTR MaLR 1 346 0 3 610 243 0 0 0 chr9 3349607 3349634 -120726538 + (T)n Simple_repeat Simple_repeat 1 27 0 3 610 1020 113 113 0 chr9 3349650 3349818 -120726354 + B2_Mm2 SINE B2 2 188 -7 3 610 380 72 0 18 chr9 3349839 3349847 -120726325 + (GAGAA)n Simple_repeat Simple_repeat 4 11 0 3 610 1041 95 0 39 chr9 3349847 3350000 -120726172 + B1_Mus1 SINE Alu 2 148 0 3 610 380 72 0 18 chr9 3350000 3350048 -120726124 + (GAGAA)n Simple_repeat Simple_repeat 2 49 0 3 610 602 179 8 82 chr9 3350351 3350473 -120725699 - B1_Mur3 SINE Alu -31 118 6 3 610 349 319 76 91 chr9 3350685 3351070 -120725102 + RMER21A LTR ERV1 112 613 -334 3 610 317 22 0 0 chr9 3352441 3352486 -120723686 - L1_Mus2 LINE L1 0 6566 6522 3 610 22 0 0 0 chr9 3353187 3353209 -120722963 + AT_rich Low_complexity Low_complexity 1 22 0 3 610 354 315 19 0 chr9 3353264 3353372 -120722800 + PB1D7 SINE Alu 2 111 -9 3 610 224 324 107 71 chr9 3354182 3354205 -120721967 - B4A SINE B4 -45 247 179 3 610 495 296 38 0 chr9 3354205 3354337 -120721835 - B1F SINE Alu -6 143 7 3 610 224 324 107 71 chr9 3354337 3354378 -120721794 - B4A SINE B4 -45 178 45 3 610 1193 34 0 27 chr9 3354638 3354788 -120721384 + B1_Mus2 SINE Alu 2 147 0 3 610 208 0 62 0 chr9 3354790 3354822 -120721350 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 610 287 217 100 0 chr9 3355805 3355865 -120720307 - ID4_ SINE ID -4 79 14 3 610 1024 161 81 24 chr9 3356173 3356383 -120719789 - URR1A DNA MER1_type 0 226 5 3 610 1567 190 83 28 chr9 3356589 3356914 -120719258 + RLTR16 LTR ERVK 163 505 0 3 610 222 62 0 0 chr9 3356953 3356985 -120719187 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 610 684 202 162 34 chr9 3356986 3357165 -120719007 - B3 SINE B2 -14 202 1 3 610 319 244 88 7 chr9 3358011 3358147 -120718025 - L1ME2z LINE L1 -3 6441 6295 3 610 27 0 0 0 chr9 3358876 3358903 -120717269 + AT_rich Low_complexity Low_complexity 1 27 0 3 610 1182 55 121 0 chr9 3359190 3359355 -120716817 - B2_Mm1t SINE B2 -8 185 1 3 610 350 326 85 6 chr9 3359760 3359936 -120716236 - L1MC4 LINE L1 0 8042 7853 3 610 180 0 0 0 chr9 3360155 3360175 -120715997 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 3 610 1575 249 52 24 chr9 3360175 3360558 -120715614 - Lx6 LINE L1 -20 7440 7047 3 610 3910 246 140 48 chr9 3361026 3361844 -120714328 - Lx6 LINE L1 -407 7053 6104 3 610 2190 88 189 17 chr9 3361844 3362203 -120713969 - BGLII LTR ERVK 0 421 1 3 610 3910 246 140 48 chr9 3362203 3362286 -120713886 - Lx6 LINE L1 -1357 6103 6035 3 610 189 74 0 0 chr9 3362286 3362313 -120713859 + (CCA)n Simple_repeat Simple_repeat 1 27 0 3 610 6845 203 38 44 chr9 3362313 3363325 -120712847 - Lx6 LINE L1 -1426 6034 5051 3 610 1266 106 11 11 chr9 3363325 3363515 -120712657 + B2_Mm1t SINE B2 2 191 -2 3 610 6845 196 20 43 chr9 3363515 3364286 -120711886 - Lx6 LINE L1 -830 5050 4283 3 610 399 244 8 47 chr9 3364305 3364434 -120711738 + Lx6 LINE L1 5923 6046 -1414 3 610 359 138 106 15 chr9 3364523 3364589 -120711583 + BGLII_Mus LTR ERVK 1 72 -350 3 610 819 0 0 0 chr9 3364589 3364680 -120711492 + (TA)n Simple_repeat Simple_repeat 2 92 0 3 610 351 0 0 0 chr9 3364680 3364718 -120711454 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 610 669 106 0 0 chr9 3364718 3364812 -120711360 - B1_Mus2 SINE Alu -53 94 1 3 610 1338 194 98 58 chr9 3364813 3365440 -120710732 - Lx6 LINE L1 -4369 1508 870 3 610 5264 73 15 65 chr9 3365811 3366628 -120709544 + RLTR22_Mus LTR ERVK 1 776 -1032 3 610 189 74 0 0 chr9 3366633 3366660 -120709512 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 3 610 360 0 0 0 chr9 3366673 3366713 -120709459 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 610 1144 74 0 0 chr9 3366795 3366943 -120709229 - B1_Mus1 SINE Alu 0 148 1 3 610 245 250 0 0 chr9 3367445 3367501 -120708671 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 610 295 274 119 71 chr9 3368566 3368692 -120707480 + B3A SINE B2 65 196 -2 3 610 213 65 0 0 chr9 3369194 3369225 -120706947 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 610 500 338 8 0 chr9 3369226 3369359 -120706813 - Lx8 LINE L1 -142 7331 7198 3 610 446 296 15 15 chr9 3369494 3369631 -120706541 - B1F SINE Alu -10 139 3 3 610 983 299 103 32 chr9 3369999 3370097 -120706075 - Lx9 LINE L1 -26 7618 7487 3 610 387 113 0 0 chr9 3370097 3370159 -120706013 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 610 983 299 103 32 chr9 3370159 3370526 -120705646 - Lx9 LINE L1 -158 7486 7121 3 610 1069 269 44 14 chr9 3370724 3370999 -120705173 + B4 SINE B4 6 288 -4 3 610 192 125 0 0 chr9 3371037 3371069 -120705103 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 610 2168 125 5 76 chr9 3371203 3371584 -120704588 - ORR1B1 LTR MaLR 0 394 41 4 610 374 300 65 20 chr9 3371589 3371742 -120704430 + Lx9 LINE L1 6943 7102 -542 4 610 215 245 0 20 chr9 3372025 3372075 -120704097 + GA-rich Low_complexity Low_complexity 4 52 0 4 610 221 30 61 0 chr9 3372350 3372383 -120703789 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 610 1219 28 7 0 chr9 3372383 3372527 -120703645 - B1_Mus2 SINE Alu -2 145 1 4 610 29374 85 24 14 chr9 3372552 3374265 -120701907 - L1_Mus2 LINE L1 0 6566 4877 4 610 2882 67 3 3 chr9 3374265 3374637 -120701535 + L1_Mus1 LINE L1 6196 6567 0 4 610 29374 96 46 11 chr9 3374637 3376179 -120699993 - L1_Mus2 LINE L1 -1007 4876 3207 4 610 1914 163 90 8 chr9 3376179 3376259 -120699913 - RLTR9E LTR ERVK 0 409 331 4 610 549 0 0 0 chr9 3376259 3376320 -120699852 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 610 1914 163 90 8 chr9 3376320 3376617 -120699555 - RLTR9E LTR ERVK -79 330 2 4 610 29374 84 33 9 chr9 3376617 3379584 -120696588 - L1_Mus2 LINE L1 -2677 3206 240 4 610 269 282 91 98 chr9 3379877 3380152 -120696020 + B4A SINE B4 4 276 -16 4 610 1186 48 0 0 chr9 3382153 3382298 -120693874 + B1_Mm SINE Alu 1 145 -2 4 610 219 36 0 0 chr9 3382654 3382682 -120693490 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 610 499 72 316 26 chr9 3382929 3383043 -120693129 - B2_Mm2 SINE B2 -2 193 47 4 610 826 111 174 0 chr9 3383162 3383306 -120692866 - B2_Mm1t SINE B2 -14 179 11 4 610 271 284 12 58 chr9 3383231 3383317 -120692855 - RSINE1 SINE B4 -79 86 5 4 610 290 275 85 60 chr9 3383534 3383820 -120692352 + MTE2a LTR MaLR 35 376 -3 4 610 1367 85 5 16 chr9 3384091 3384283 -120691889 + B2_Mm1a SINE B2 2 191 -2 4 610 774 87 16 8 chr9 3384321 3384449 -120691723 - Lx LINE L1 -2 6652 6524 4 610 375 271 55 49 chr9 3384556 3384719 -120691453 - RSINE1 SINE B4 0 165 2 4 610 1149 61 0 13 chr9 3385958 3386097 -120690075 + B1_Mus2 SINE Alu 1 139 -8 4 610 234 0 0 0 chr9 3386097 3386123 -120690049 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 4 610 199 354 22 89 chr9 3386276 3386366 -120689806 - MIRm SINE MIR -3 273 190 4 610 190 287 122 8 chr9 3386444 3386567 -120689605 - L2a LINE L2 -70 3356 3220 4 610 275 249 8 0 chr9 3386818 3386896 -120689276 + L1M5 LINE L1 3159 3250 -2896 4 610 25 0 0 0 chr9 3386925 3386950 -120689222 + AT_rich Low_complexity Low_complexity 1 25 0 4 610 626 254 36 0 chr9 3387067 3387205 -120688967 - ID_B1 SINE B4 0 224 82 4 610 402 21 0 0 chr9 3387216 3387263 -120688909 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 610 1161 116 134 15 chr9 3387294 3387495 -120688677 + URR1B DNA MER1_type 1 225 0 4 610 317 274 68 0 chr9 3387512 3387585 -120688587 + RSINE1 SINE B4 4 81 -84 4 610 186 167 0 0 chr9 3387626 3387662 -120688510 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 610 669 221 37 0 chr9 3387691 3387827 -120688345 - B1_Mur2 SINE Alu -8 141 1 4 610 4574 53 3 28 chr9 3387944 3388546 -120687626 - LTRIS_Mus LTR ERV1 0 587 1 4 610 2398 70 19 93 chr9 3388735 3388833 -120687339 + MTB LTR MaLR 1 90 -310 4 610 6792 86 36 4 chr9 3388833 3389786 -120686386 + RLTR13C1 LTR ERVK 1 983 0 4 610 2398 92 24 94 chr9 3389786 3390131 -120686041 + MTB LTR MaLR 91 380 -20 4 610 1194 237 108 6 chr9 3390871 3391185 -120684987 + ORR1E LTR MaLR 1 346 -13 4 610 218 373 72 39 chr9 3391597 3391929 -120684243 - L2a LINE L2 -118 3308 2966 4 610 271 271 118 28 chr9 3391929 3392085 -120684087 + MT2A LTR ERVL 383 554 0 4 610 389 293 97 22 chr9 3392085 3392263 -120683909 + MER2 DNA MER2_type 135 326 -19 4 610 398 322 88 38 chr9 3392416 3392655 -120683517 - L2a LINE L2 -624 2795 2545 4 610 5430 196 77 31 chr9 3393291 3394549 -120681623 + Lx2B LINE L1 5678 6993 -7 4 610 5776 87 14 1 chr9 3394636 3395426 -120680746 + L1_Mus1 LINE L1 5767 6566 -1 4 610 578 183 0 0 chr9 3395444 3395537 -120680635 + U6 snRNA snRNA 10 102 -5 4 610 530 301 24 0 chr9 3395947 3396113 -120680059 + ERVL-int LTR ERVL 1762 1931 -3783 4 610 758 257 115 34 chr9 3396135 3396369 -120679803 + ERVL-int LTR ERVL 2021 2273 -3484 4 610 1098 82 0 13 chr9 3396542 3396691 -120679481 + B1_Mm SINE Alu 1 147 0 4 610 213 39 0 0 chr9 3397296 3397322 -120678850 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4 610 6357 122 5 24 chr9 3397322 3398313 -120677859 - Lx LINE L1 -7 6647 5676 4 610 3363 142 2 2 chr9 3398306 3398837 -120677335 + Lx LINE L1 5159 5689 -194 4 610 221 0 35 0 chr9 3399192 3399221 -120676951 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 610 1098 77 0 14 chr9 3399345 3399490 -120676682 + B1_Mm SINE Alu 1 143 -4 4 610 182 62 0 30 chr9 3399496 3399529 -120676643 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 4 610 2889 35 9 0 chr9 3399902 3400244 -120675928 - ORR1A1 LTR MaLR 0 346 2 4 610 3055 51 5 20 chr9 3400381 3400781 -120675391 - MTA_Mm LTR MaLR -2 394 1 4 610 989 258 119 20 chr9 3400782 3401142 -120675030 - MTD LTR MaLR -14 405 18 4 610 203 313 122 48 chr9 3401207 3401395 -120674777 - MIRc SINE MIR -12 256 55 4 610 654 281 70 0 chr9 3402072 3402271 -120673901 - B3 SINE B2 -3 213 1 4 610 351 0 0 0 chr9 3402670 3402709 -120673463 + (CAA)n Simple_repeat Simple_repeat 1 39 0 4 610 279 0 0 0 chr9 3403231 3403262 -120672910 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4 610 588 282 47 6 chr9 3403262 3403433 -120672739 - B3 SINE B2 -37 179 2 4 610 1276 98 38 0 chr9 3403479 3403663 -120672509 - B2_Mm2 SINE B2 -4 191 1 4 610 13418 120 37 23 chr9 3405582 3407276 -120668896 - Lx2B LINE L1 -6 6994 5299 4 610 4569 35 0 0 chr9 3407276 3407815 -120668357 - L1Md_F2 LINE L1 -14 6568 6030 4 76 13418 150 60 21 chr9 3407815 3409791 -120666381 - Lx2B LINE L1 -579 5298 3209 4 611 666 200 15 15 chr9 3410127 3410259 -120665913 - B1_Mur1 SINE Alu 0 149 18 4 611 198 0 0 0 chr9 3410271 3410293 -120665879 + (A)n Simple_repeat Simple_repeat 1 22 0 4 611 351 0 0 0 chr9 3410343 3410382 -120665790 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 611 365 294 81 18 chr9 3410426 3410537 -120665635 - RSINE1 SINE B4 0 165 48 4 611 232 270 96 16 chr9 3410823 3411011 -120665161 - L1MA7 LINE L1 0 6291 6089 4 611 224 194 0 43 chr9 3411338 3411408 -120664764 + GA-rich Low_complexity Low_complexity 3 69 0 4 611 203 254 0 0 chr9 3412285 3412348 -120663824 + T-rich Low_complexity Low_complexity 1 63 0 4 611 2190 85 59 0 chr9 3413529 3413834 -120662338 + ORR1A2 LTR MaLR 5 327 0 4 611 10299 140 22 21 chr9 3413834 3414674 -120661498 + ORR1A2-int LTR MaLR 1 873 -919 4 611 1123 50 7 0 chr9 3414674 3414815 -120661357 + B1_Mus1 SINE Alu 1 142 -6 4 611 10299 140 22 21 chr9 3414815 3415757 -120660415 + ORR1A2-int LTR MaLR 874 1785 -7 4 611 2146 111 9 58 chr9 3415763 3416045 -120660127 + ORR1A2 LTR MaLR 1 272 -55 4 611 1334 73 20 35 chr9 3416045 3416243 -120659929 + B2_Mm2 SINE B2 1 195 0 4 611 2146 111 9 58 chr9 3416243 3416304 -120659868 + ORR1A2 LTR MaLR 273 327 0 4 611 228 67 0 0 chr9 3416766 3416796 -120659376 + (A)n Simple_repeat Simple_repeat 1 30 0 4 611 468 320 16 42 chr9 3416920 3417109 -120659063 + B3A SINE B2 2 185 -13 4 611 637 97 56 21 chr9 3417136 3417369 -120658803 + (CA)n Simple_repeat Simple_repeat 1 241 0 4 611 356 343 42 7 chr9 3417418 3417562 -120658610 + B4A SINE B4 42 190 -102 4 611 203 211 53 0 chr9 3417653 3417710 -120658462 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 611 283 379 15 15 chr9 3418416 3418550 -120657622 - MIRb SINE MIR -32 236 103 4 611 203 29 0 81 chr9 3418947 3418984 -120657188 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4 611 1179 58 13 0 chr9 3418985 3419140 -120657032 - B2_Mm2 SINE B2 -37 158 2 4 611 6057 57 15 62 chr9 3419205 3420072 -120656100 + L1_Mus2 LINE L1 5740 6565 -1 4 611 668 284 32 46 chr9 3420100 3420318 -120655854 + B3 SINE B2 1 215 -1 4 611 326 286 209 55 chr9 3420352 3420515 -120655657 + B3A SINE B2 3 190 -8 4 611 6972 102 12 18 chr9 3421618 3421669 -120654503 - L1_Mus4 LINE L1 0 6636 6589 4 611 3114 56 5 2 chr9 3421669 3422064 -120654108 + MTA_Mm LTR MaLR 1 396 0 4 611 6972 110 12 16 chr9 3422064 3423255 -120652917 - L1_Mus4 LINE L1 -48 6588 5401 4 611 10381 102 77 9 chr9 3423883 3426247 -120649925 - L1VL2 LINE L1 -979 2636 90 4 611 252 344 101 31 chr9 3426643 3426802 -120649370 - MIR3 SINE MIR -24 184 15 4 611 216 158 0 0 chr9 3426805 3426843 -120649329 + T-rich Low_complexity Low_complexity 1 38 0 4 611 21 0 0 0 chr9 3427697 3427718 -120648454 + AT_rich Low_complexity Low_complexity 1 21 0 4 611 288 0 0 0 chr9 3427764 3427796 -120648376 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 611 1182 77 0 13 chr9 3427796 3427955 -120648217 - B2_Mm2 SINE B2 -37 158 2 4 611 348 232 137 46 chr9 3428249 3428380 -120647792 + B1_Mur2 SINE Alu 5 147 -2 4 611 22 70 0 0 chr9 3428574 3428617 -120647555 + AT_rich Low_complexity Low_complexity 1 43 0 4 611 189 0 0 0 chr9 3428938 3428959 -120647213 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 4 611 378 0 0 0 chr9 3428959 3429001 -120647171 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 611 448 345 6 114 chr9 3429010 3429177 -120646995 - RSINE1 SINE B4 -14 151 3 4 611 234 0 0 0 chr9 3429549 3429575 -120646597 + (T)n Simple_repeat Simple_repeat 1 26 0 4 611 1201 54 0 0 chr9 3429575 3429722 -120646450 - B1_Mm SINE Alu 0 147 1 4 611 21 0 0 0 chr9 3429924 3429945 -120646227 + AT_rich Low_complexity Low_complexity 1 21 0 4 611 1170 82 0 0 chr9 3432186 3432333 -120643839 + B1_Mm SINE Alu 1 147 0 4 611 184 278 36 18 chr9 3432359 3432414 -120643758 - MIR3 SINE MIR -34 174 119 4 611 4433 42 0 0 chr9 3432645 3433172 -120643000 - L1Md_F2 LINE L1 -112 6470 5944 4 611 587 64 0 0 chr9 3433170 3433248 -120642924 + L1Md_F2 LINE L1 5886 5963 -619 4 611 1377 75 21 0 chr9 3433359 3433547 -120642625 - B2_Mm1t SINE B2 -1 192 1 5 611 370 111 0 60 chr9 3433656 3433723 -120642449 - B2_Mm2 SINE B2 -86 109 47 5 611 1184 131 11 0 chr9 3433770 3433946 -120642226 - B2_Mm1t SINE B2 -14 179 2 5 611 2971 148 35 44 chr9 3434151 3434744 -120641428 - RMER6C LTR ERVK 0 690 103 5 611 387 0 0 0 chr9 3435034 3435077 -120641095 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 611 264 30 0 0 chr9 3435077 3435110 -120641062 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 611 187 89 43 43 chr9 3436205 3436252 -120639920 + T-rich Low_complexity Low_complexity 1 47 0 5 611 750 280 171 27 chr9 3436436 3436920 -120639252 - L1ME1 LINE L1 -152 6200 5647 5 611 414 248 176 18 chr9 3437085 3437364 -120638808 - L1MC LINE L1 -2913 3233 2911 5 611 221 265 0 0 chr9 3437537 3437586 -120638586 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 5 611 659 269 120 14 chr9 3437609 3437967 -120638205 - L1ME1 LINE L1 -3476 2843 2448 5 611 452 246 140 82 chr9 3438057 3438132 -120638040 - L1ME1 LINE L1 -5297 1103 1031 5 611 242 223 153 41 chr9 3438132 3438230 -120637942 - PB1D10 SINE Alu -8 109 1 5 611 452 246 140 82 chr9 3438230 3438469 -120637703 - L1ME1 LINE L1 -5370 1030 771 5 611 1237 14 7 0 chr9 3438753 3438898 -120637274 - B1_Mm SINE Alu -1 146 1 5 611 5424 119 13 59 chr9 3439249 3440195 -120635977 - RLTR13D6 LTR ERVK 0 902 1 5 611 826 80 182 8 chr9 3440397 3440523 -120635649 - B1_Mus1 SINE Alu 0 148 1 5 611 329 299 45 27 chr9 3440558 3440668 -120635504 - B1F SINE Alu -1 148 37 5 611 234 151 40 27 chr9 3440713 3440788 -120635384 + (TATAA)n Simple_repeat Simple_repeat 4 79 0 5 611 748 267 15 45 chr9 3441504 3441704 -120634468 - B3A SINE B2 -3 195 2 5 611 461 257 61 9 chr9 3441743 3441857 -120634315 + RSINE1 SINE B4 35 154 -11 5 611 33 43 0 0 chr9 3442524 3442571 -120633601 + AT_rich Low_complexity Low_complexity 1 47 0 5 611 759 214 0 20 chr9 3443966 3444114 -120632058 - B1_Mur2 SINE Alu -4 145 1 5 611 279 0 0 0 chr9 3444721 3444752 -120631420 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 611 743 283 144 0 chr9 3444828 3445015 -120631157 + B3 SINE B2 1 214 -2 5 611 661 352 0 37 chr9 3445560 3445749 -120630423 + B4 SINE B4 111 292 0 5 611 1039 170 19 86 chr9 3446576 3446833 -120629339 - RMER1C Other Other 0 1342 1103 5 611 4310 121 35 3 chr9 3447421 3448111 -120628061 - Lx3A LINE L1 -3 6978 6267 5 611 1219 205 28 73 chr9 3448111 3448461 -120627711 - L1_Mur1 LINE L1 -6646 336 1 5 611 354 320 97 52 chr9 3449374 3449670 -120626502 - MLT1A0 LTR MaLR -13 377 1 5 611 1662 227 132 75 chr9 3450339 3450791 -120625381 - Lx7 LINE L1 -12 7684 7196 5 611 2972 97 70 2 chr9 3450791 3451235 -120624937 + L1_Mus3 LINE L1 6165 6638 0 5 611 1662 227 132 75 chr9 3451235 3451421 -120624751 - Lx7 LINE L1 -501 7195 7011 5 611 2186 124 53 40 chr9 3451431 3451827 -120624345 - RLTR9F LTR ERVK -14 401 1 5 611 730 222 12 24 chr9 3451827 3451993 -120624179 - Lx7 LINE L1 -681 7015 6852 5 611 310 381 95 0 chr9 3452069 3452174 -120623998 - PB1 SINE Alu -12 115 1 5 611 22 0 0 0 chr9 3452973 3452995 -120623177 + AT_rich Low_complexity Low_complexity 1 22 0 5 611 237 373 27 0 chr9 3453111 3453186 -120622986 - Cheshire DNA MER1_type -2160 260 184 5 611 23 0 0 0 chr9 3453336 3453359 -120622813 + AT_rich Low_complexity Low_complexity 1 23 0 5 611 546 268 0 8 chr9 3453359 3453487 -120622685 - B1_Mur1 SINE Alu 0 149 23 5 611 1067 202 129 35 chr9 3455520 3455807 -120620365 - RMER17C LTR ERVK -96 314 1 5 611 742 275 110 53 chr9 3456005 3456404 -120619768 - RMER5 LTR ERV1 0 534 113 5 611 1396 57 0 6 chr9 3457458 3457633 -120618539 + B2_Mm1t SINE B2 1 174 -19 5 611 237 65 0 0 chr9 3457634 3457665 -120618507 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 611 24 67 0 0 chr9 3458959 3459004 -120617168 + AT_rich Low_complexity Low_complexity 1 45 0 5 611 22 0 0 0 chr9 3459119 3459141 -120617031 + AT_rich Low_complexity Low_complexity 1 22 0 5 611 198 0 0 0 chr9 3459363 3459385 -120616787 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 611 1051 103 0 14 chr9 3459385 3459521 -120616651 - B1_Mus1 SINE Alu -10 138 3 5 611 612 0 0 0 chr9 3460546 3460614 -120615558 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 611 366 319 57 74 chr9 3460663 3460839 -120615333 - B4A SINE B4 -119 173 1 5 611 463 81 0 83 chr9 3460842 3460950 -120615222 + T-rich Low_complexity Low_complexity 2 100 0 5 611 1893 68 4 8 chr9 3461043 3461293 -120614879 - L1_Mus1 LINE L1 0 6567 6319 5 611 2870 17 48 8 chr9 3461293 3461646 -120614526 - IAPLTR1_Mm LTR ERVK 0 367 1 5 611 28706 21 1 3 chr9 3461646 3464924 -120611248 - IAPEz-int LTR ERVK 0 6481 3210 5 611 7087 87 108 19 chr9 3464923 3466038 -120610134 - IAPEz-int LTR ERVK -5168 1313 100 5 611 1062 286 24 32 chr9 3466038 3466119 -120610053 - Lx2A1 LINE L1 -259 6749 6669 5 611 2870 17 48 8 chr9 3466119 3466472 -120609700 - IAPLTR1_Mm LTR ERVK 0 367 1 5 611 9766 86 6 1 chr9 3466472 3468347 -120607825 - L1_Mus1 LINE L1 -243 6324 4439 5 611 4347 121 23 38 chr9 3468348 3469179 -120606993 - L1_Mus1 LINE L1 -4113 1770 946 5 611 1152 121 0 0 chr9 3469179 3469353 -120606819 - L1_Mus1 LINE L1 0 6567 6394 5 611 4347 184 75 31 chr9 3469353 3470094 -120606078 - L1_Mus1 LINE L1 -5671 945 177 5 611 432 0 0 0 chr9 3470294 3470342 -120605830 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 611 683 93 148 0 chr9 3470349 3470457 -120605715 - B1_Mus1 SINE Alu 0 148 25 5 611 1163 105 41 0 chr9 3470591 3470762 -120605410 + B2_Mm1a SINE B2 2 179 -14 5 611 1448 246 40 14 chr9 3470805 3471156 -120605016 - RLTR17 LTR ERVK -82 610 251 5 611 776 192 44 35 chr9 3471177 3471368 -120604804 - RLTR17 LTR ERVK -238 184 1 5 611 1734 306 82 21 chr9 3471478 3472190 -120603982 - Lx9 LINE L1 -317 7327 6573 5 611 503 293 40 7 chr9 3472491 3472642 -120603530 + Lx9 LINE L1 6386 6541 -1103 5 611 311 186 128 0 chr9 3472996 3473098 -120603074 - BC1_Mm scRNA scRNA -35 117 3 5 611 310 287 84 15 chr9 3473103 3473234 -120602938 - B1F1 SINE Alu 0 149 10 5 611 410 312 148 49 chr9 3473255 3473389 -120602783 - MLT1D LTR MaLR -178 327 164 5 611 1661 230 116 28 chr9 3473389 3473926 -120602246 + RLTR31A_Mm LTR ERVK 1 584 0 5 611 410 308 28 63 chr9 3473926 3474059 -120602113 - MLT1D LTR MaLR -463 164 34 5 611 23 33 0 0 chr9 3474805 3474835 -120601337 + AT_rich Low_complexity Low_complexity 1 30 0 5 611 477 141 0 0 chr9 3474887 3474986 -120601186 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 611 328 339 133 17 chr9 3475859 3476039 -120600133 - MIR SINE MIR -1 261 61 5 611 22 35 0 0 chr9 3479266 3479295 -120596877 + AT_rich Low_complexity Low_complexity 1 29 0 5 611 1284 161 30 4 chr9 3479295 3479526 -120596646 - Lx4A LINE L1 -1 7057 6821 5 611 262 354 78 97 chr9 3479707 3479916 -120596256 - MLT1G LTR MaLR -318 273 70 5 611 631 241 14 14 chr9 3479916 3480059 -120596113 + B1_Mur2 SINE Alu 2 144 -5 5 611 262 354 78 97 chr9 3480059 3480118 -120596054 - MLT1G LTR MaLR -522 69 10 5 611 227 271 10 124 chr9 3480272 3480369 -120595803 - MLT1G-int LTR MaLR -193 1296 1211 5 611 280 196 120 0 chr9 3481119 3481211 -120594961 + L1MEc LINE L1 675 777 -5623 5 611 387 314 149 22 chr9 3481264 3481580 -120594592 + L1MEc LINE L1 1835 2190 -4210 5 611 1227 282 189 71 chr9 3481580 3482211 -120593961 + Lx5 LINE L1 6450 7227 -233 5 611 20691 157 25 27 chr9 3482211 3487195 -120588977 + L1_Mus4 LINE L1 1657 6629 -7 5 611 203 152 0 0 chr9 3487199 3487232 -120588940 + A-rich Low_complexity Low_complexity 3 35 0 5 611 283 304 131 97 chr9 3487719 3488163 -120588009 - RLTR12B LTR ERVK -51 477 19 5 611 612 253 160 17 chr9 3489105 3489286 -120586886 + B3 SINE B2 2 208 -8 5 611 260 411 30 15 chr9 3489305 3489436 -120586736 + MLT1A1 LTR MaLR 73 205 -203 5 611 1629 209 93 16 chr9 3489436 3489864 -120586308 + RMER6B LTR ERVK 1 461 0 5 611 562 178 37 0 chr9 3489892 3489999 -120586173 - MYSERV16_I-int LTR ERVK -572 1754 1644 5 611 219 36 0 0 chr9 3490043 3490071 -120586101 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 611 1807 122 28 22 chr9 3490424 3490744 -120585428 + RLTRETN_Mm LTR ERVK 1 322 0 5 611 24920 23 6 6 chr9 3490744 3493986 -120582186 + ETnERV-int LTR ERVK 1 3314 0 5 611 1798 112 31 22 chr9 3493986 3494305 -120581867 + RLTRETN_Mm LTR ERVK 1 322 0 5 611 24 0 0 0 chr9 3496253 3496277 -120579895 + AT_rich Low_complexity Low_complexity 1 24 0 5 611 189 107 0 0 chr9 3497341 3497369 -120578803 + (T)n Simple_repeat Simple_repeat 1 28 0 5 611 573 276 108 34 chr9 3497975 3498151 -120578021 - B3A SINE B2 -3 195 7 5 611 418 221 0 0 chr9 3498163 3498240 -120577932 - B4 SINE B4 -213 79 3 5 611 408 361 0 17 chr9 3498251 3498423 -120577749 + MIRb SINE MIR 60 228 -40 5 611 3640 165 45 19 chr9 3498433 3499403 -120576769 - ETnERV2-int LTR ERVK -1495 4313 2490 5 611 394 234 18 53 chr9 3499456 3499569 -120576603 - MMETn-int LTR ERVK -4735 109 1 5 611 1808 156 54 91 chr9 3499570 3499978 -120576194 - RLTR9C LTR ERVK 0 393 1 5 611 1989 230 40 53 chr9 3500135 3500760 -120575412 - Lx6 LINE L1 -1133 6327 5711 1 611 547 223 0 0 chr9 3500786 3500889 -120575283 + Lx6 LINE L1 6360 6462 -998 2 611 2666 162 116 29 chr9 3500902 3501499 -120574673 - RMER6C LTR ERVK -41 649 1 3 611 30243 84 2 3 chr9 3501546 3506778 -120569394 + L1Md_F LINE L1 359 5586 -297 4 611 7601 69 3 6 chr9 3506779 3507773 -120568399 + L1Md_F2 LINE L1 5588 6578 -4 5 611 228 256 25 13 chr9 3507773 3507845 -120568327 + Lx6 LINE L1 6504 6576 -884 2 611 14785 138 19 7 chr9 3507905 3510876 -120565296 - L1VL4 LINE L1 -1879 4004 988 6 611 23207 45 0 3 chr9 3510868 3513887 -120562285 + L1Md_F3 LINE L1 2576 5586 -297 7 611 7687 53 14 1 chr9 3513887 3514858 -120561314 + L1Md_F3 LINE L1 5587 6570 -14 7 611 2358 179 26 17 chr9 3514873 3515339 -120560833 - L1VL4 LINE L1 -5651 1006 537 6 611 1321 229 124 34 chr9 3515344 3515756 -120560416 - RLTR20B3 LTR ERVK -107 470 22 8 611 3652 259 37 5 chr9 3515756 3516785 -120559387 + Lx5 LINE L1 5913 6974 -76 9 611 648 271 103 15 chr9 3516957 3517152 -120559020 + ID_B1 SINE B4 8 219 -5 1 611 746 268 30 15 chr9 3517516 3517713 -120558459 + B3 SINE B2 2 201 -15 1 611 261 194 15 15 chr9 3517713 3517781 -120558391 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 611 21 0 0 0 chr9 3517942 3517963 -120558209 + AT_rich Low_complexity Low_complexity 1 21 0 1 611 43 64 0 0 chr9 3517974 3518052 -120558120 + AT_rich Low_complexity Low_complexity 1 78 0 1 611 459 0 0 0 chr9 3518562 3518613 -120557559 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 611 1744 167 60 32 chr9 3519203 3519636 -120556536 - MYSERV6-int LTR ERVK -444 8515 8071 1 611 2669 140 31 12 chr9 3519648 3520161 -120556011 - L1_Mur2 LINE L1 -1852 4025 3503 1 611 982 146 14 79 chr9 3520200 3520416 -120555756 + Lx2 LINE L1 5915 6116 -881 1 611 3638 181 18 1 chr9 3520412 3521128 -120555044 + Lx2 LINE L1 5125 5852 -25 1 611 1134 179 137 106 chr9 3521128 3521478 -120554694 + RLTR9C LTR ERVK 1 361 -32 2 611 6832 136 18 37 chr9 3521478 3521506 -120554666 + Lx2 LINE L1 5852 5878 -1119 1 611 2983 69 10 8 chr9 3521506 3521899 -120554273 - MTA_Mm LTR MaLR -2 394 1 2 611 6832 136 18 37 chr9 3521899 3523037 -120553135 + Lx2 LINE L1 5879 6996 -1 1 611 3515 230 30 32 chr9 3523041 3524073 -120552099 + Lx5 LINE L1 5290 6321 -729 2 611 965 216 42 74 chr9 3524073 3524453 -120551719 + RLTR9A LTR ERVK 1 368 0 2 611 3515 264 48 72 chr9 3524453 3525202 -120550970 + Lx5 LINE L1 6322 7046 -4 2 611 4286 137 62 12 chr9 3525440 3526210 -120549962 - RMER17D2 LTR ERVK 0 809 1 2 611 326 119 102 0 chr9 3526738 3526797 -120549375 + Lx8 LINE L1 7026 7090 -383 2 611 21 0 0 0 chr9 3527436 3527457 -120548715 + AT_rich Low_complexity Low_complexity 1 21 0 2 611 4491 83 24 7 chr9 3527511 3528130 -120548042 - L1Md_F2 LINE L1 0 6582 5953 2 611 570 41 0 0 chr9 3528130 3528203 -120547969 + L1_Mm LINE L1 1730 1802 -4081 2 611 369 0 0 0 chr9 3528420 3528461 -120547711 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 611 536 340 28 0 chr9 3528557 3528698 -120547474 - RSINE1 SINE B4 0 165 21 3 611 414 0 0 0 chr9 3529157 3529203 -120546969 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 611 453 50 0 0 chr9 3529816 3529876 -120546296 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 611 324 0 0 0 chr9 3529876 3529911 -120546261 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 611 380 305 0 0 chr9 3529911 3530029 -120546143 - Lx8 LINE L1 -530 6943 6826 3 611 938 297 67 17 chr9 3530042 3530340 -120545832 + Lx8 LINE L1 7017 7329 -144 3 611 180 125 0 0 chr9 3530732 3530764 -120545408 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 611 378 0 0 0 chr9 3531817 3531859 -120544313 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 611 248 70 0 23 chr9 3531996 3532040 -120544132 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 611 599 0 0 14 chr9 3532689 3532761 -120543411 + (CCA)n Simple_repeat Simple_repeat 2 72 0 3 611 220 292 0 0 chr9 3532952 3533017 -120543155 + (CCG)n Simple_repeat Simple_repeat 3 67 0 3 611 240 233 0 16 chr9 3533398 3533459 -120542713 + T-rich Low_complexity Low_complexity 2 61 0 4 611 295 141 0 30 chr9 3533480 3533546 -120542626 + CT-rich Low_complexity Low_complexity 1 64 0 4 611 1196 104 3 6 chr9 3533548 3533887 -120542285 + (TC)n Simple_repeat Simple_repeat 1 337 0 4 611 414 0 0 0 chr9 3534154 3534200 -120541972 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 611 848 87 16 0 chr9 3535690 3535816 -120540356 + (TTTC)n Simple_repeat Simple_repeat 1 128 0 4 611 3476 94 4 2 chr9 3535850 3536332 -120539840 - L1_Mus2 LINE L1 0 6566 6084 4 611 240 204 41 0 chr9 3537441 3537490 -120538682 - RLTR1C LTR ERV1 -277 226 176 4 611 1825 136 28 58 chr9 3537949 3538276 -120537896 + ORR1A2 LTR MaLR 3 319 -8 4 76 2700 146 126 31 chr9 3538587 3539173 -120536999 + RLTR26 LTR ERVK 1 642 0 4 612 393 149 0 0 chr9 3541106 3541173 -120534999 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 612 187 79 26 26 chr9 3541192 3541231 -120534941 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 5 612 8463 112 11 13 chr9 3541463 3542936 -120533236 - Lx3A LINE L1 0 6981 5508 5 612 416 36 0 0 chr9 3544621 3544677 -120531495 + Lx2 LINE L1 6588 6643 -354 5 612 1285 161 0 13 chr9 3544677 3544903 -120531269 + Lx2 LINE L1 6775 6997 0 5 612 763 270 54 0 chr9 3545034 3545238 -120530934 - B3 SINE B2 0 216 2 5 612 348 206 186 0 chr9 3545605 3545702 -120530470 + MurSatRep1 Unknown Unknown 170 284 -1853 5 612 313 303 0 13 chr9 3545833 3545910 -120530262 + ID4_ SINE ID 4 79 -4 5 612 408 20 0 0 chr9 3545929 3545978 -120530194 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 612 204 40 0 0 chr9 3546032 3546057 -120530115 + (T)n Simple_repeat Simple_repeat 1 25 0 5 612 21 0 0 0 chr9 3546145 3546166 -120530006 + AT_rich Low_complexity Low_complexity 1 21 0 5 612 5453 80 36 5 chr9 3546918 3547687 -120528485 - L1Md_F2 LINE L1 -2 6580 5788 6 612 198 0 0 0 chr9 3547946 3547968 -120528204 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 612 543 326 109 37 chr9 3548619 3548995 -120527177 - MTD LTR MaLR -14 405 3 6 612 20526 165 28 15 chr9 3549305 3553024 -120523148 - Lx LINE L1 -8 6646 2885 6 612 351 0 0 0 chr9 3553024 3553063 -120523109 + (TTTTC)n Simple_repeat Simple_repeat 1 39 0 6 612 1179 73 11 17 chr9 3553065 3553246 -120522926 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 6 612 647 57 11 0 chr9 3553246 3553334 -120522838 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 6 612 20526 172 23 64 chr9 3553334 3555964 -120520208 - Lx LINE L1 -2999 2884 363 6 612 759 69 0 0 chr9 3556151 3556252 -120519920 - B1_Mus2 SINE Alu -44 103 3 6 612 27 0 0 0 chr9 3557075 3557102 -120519070 + AT_rich Low_complexity Low_complexity 1 27 0 6 612 21 36 0 0 chr9 3557249 3557277 -120518895 + AT_rich Low_complexity Low_complexity 1 28 0 6 612 743 116 149 0 chr9 3557467 3557588 -120518584 - B1_Mus1 SINE Alu 0 148 10 7 612 13736 150 14 44 chr9 3558713 3562005 -120514167 + L1Md_F LINE L1 261 3487 -2396 7 612 497 296 22 61 chr9 3562477 3562798 -120513374 + L1VL4 LINE L1 319 825 -5735 7 612 4272 160 55 22 chr9 3562798 3563642 -120512530 + RLTR13D6 LTR ERVK 1 816 -86 7 612 26357 133 27 6 chr9 3563642 3569233 -120506939 + L1_Mus3 LINE L1 917 6633 -5 7 612 541 143 0 75 chr9 3570134 3570240 -120505932 - MTA_Mm LTR MaLR -298 98 1 7 612 273 109 0 0 chr9 3570260 3570306 -120505866 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 612 400 299 111 0 chr9 3570467 3570584 -120505588 - B4 SINE B4 -78 214 85 7 612 1739 221 48 0 chr9 3571229 3571605 -120504567 + ORR1B1 LTR MaLR 1 394 0 7 612 452 335 64 18 chr9 3571608 3571827 -120504345 + MIR SINE MIR 2 230 -32 7 612 206 269 28 69 chr9 3572187 3572259 -120503913 + MER5B DNA MER1_type 74 142 -36 8 612 1020 83 7 27 chr9 3572608 3572757 -120503415 - B1_Mm SINE Alu -1 146 1 8 612 468 35 0 0 chr9 3572923 3572981 -120503191 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 612 1101 63 0 0 chr9 3572981 3573139 -120503033 + (GA)n Simple_repeat Simple_repeat 2 160 0 8 612 4995 56 5 2 chr9 3573712 3574342 -120501830 - L1Md_F2 LINE L1 0 6582 5951 8 612 301 358 33 0 chr9 3574938 3575058 -120501114 - ETnERV2-int LTR ERVK -209 7197 7074 8 612 414 94 0 0 chr9 3575214 3575278 -120500894 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 612 1378 128 103 0 chr9 3575466 3575700 -120500472 - Lx3A LINE L1 -6 6975 6718 8 612 294 73 0 0 chr9 3575936 3575977 -120500195 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 8 612 243 265 33 39 chr9 3576047 3576200 -120499972 + (TATG)n Simple_repeat Simple_repeat 2 153 0 8 612 297 0 0 0 chr9 3576214 3576247 -120499925 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 612 582 280 83 21 chr9 3576253 3576446 -120499726 - B4A SINE B4 -3 289 85 9 612 803 246 16 5 chr9 3577277 3577469 -120498703 + Lx7 LINE L1 6964 7157 -539 9 612 1136 292 78 27 chr9 3578250 3578623 -120497549 - Lx8 LINE L1 -148 7325 6934 9 612 5274 88 26 0 chr9 3580389 3581126 -120495046 - Lx3_Mus LINE L1 -1 7008 6253 9 612 1590 283 172 9 chr9 3581126 3581806 -120494366 - Lx8 LINE L1 -260 7213 6423 9 612 599 291 50 23 chr9 3581825 3582085 -120494087 - Lx8 LINE L1 -1105 6368 6102 9 612 8971 149 20 8 chr9 3584137 3586090 -120490082 - Lx2A1 LINE L1 -6 7002 5030 9 612 548 187 0 18 chr9 3586090 3586199 -120489973 - L1M2 LINE L1 -2381 3762 3656 9 612 8111 162 63 17 chr9 3586200 3586926 -120489246 - MusHAL1 LINE L1 -281 2431 1685 9 612 195 42 0 0 chr9 3586926 3586950 -120489222 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 9 612 8111 162 63 17 chr9 3586950 3587955 -120488217 - MusHAL1 LINE L1 -1028 1684 623 9 612 18317 184 44 90 chr9 3587978 3594681 -120481491 - L1_Mus2 LINE L1 -2 6564 307 1 612 313 222 0 60 chr9 3594976 3595043 -120481129 - B2_Mm2 SINE B2 -132 63 1 1 612 26 30 0 0 chr9 3595164 3595197 -120480975 + AT_rich Low_complexity Low_complexity 1 33 0 1 612 660 291 30 94 chr9 3596449 3596650 -120479522 + B3A SINE B2 1 188 -7 1 612 31509 81 4 0 chr9 3597178 3602353 -120473819 + L1Md_F2 LINE L1 392 5586 -297 1 612 7864 54 3 5 chr9 3602354 3603348 -120472824 + L1Md_F2 LINE L1 5588 6579 -3 1 612 447 101 0 0 chr9 3603737 3603816 -120472356 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 612 215 103 0 25 chr9 3604314 3604354 -120471818 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 612 726 131 7 27 chr9 3605373 3605522 -120470650 - Lx2 LINE L1 0 6997 6852 1 612 296 275 14 0 chr9 3605525 3605594 -120470578 - B1_Mur3 SINE Alu -78 71 2 1 612 220 361 14 0 chr9 3605532 3605604 -120470568 - B4 SINE B4 -143 149 77 1 612 187 366 0 0 chr9 3606507 3606548 -120469624 + L2b LINE L2 3289 3329 -46 1 612 456 348 14 10 chr9 3606614 3606823 -120469349 + B3 SINE B2 4 213 -3 1 612 414 0 0 0 chr9 3607594 3607640 -120468532 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 612 21361 155 26 21 chr9 3608956 3613849 -120462323 + L1_Mus2 LINE L1 272 5239 -644 1 612 4291 62 0 2 chr9 3613849 3614396 -120461776 + L1Md_F2 LINE L1 6037 6582 0 1 612 21361 150 21 23 chr9 3614396 3614628 -120461544 + L1_Mus2 LINE L1 5240 5446 -437 1 612 1143 62 0 0 chr9 3614628 3614772 -120461400 + B1_Mm SINE Alu 4 147 0 1 612 21361 132 69 69 chr9 3614772 3615934 -120460238 + L1_Mus2 LINE L1 5447 6566 0 1 612 1036 122 0 0 chr9 3616486 3616634 -120459538 - B1_Mus1 SINE Alu 0 148 1 1 612 961 185 73 5 chr9 3616652 3616858 -120459314 - Lx2 LINE L1 -13 6984 6765 1 612 4762 166 15 17 chr9 3616847 3617709 -120458463 - Lx2 LINE L1 -352 6645 5786 1 612 11368 170 26 3 chr9 3617679 3619842 -120456330 + Lx2 LINE L1 3586 5797 -80 1 612 24 32 0 0 chr9 3620271 3620302 -120455870 + AT_rich Low_complexity Low_complexity 1 31 0 1 612 499 271 15 30 chr9 3620302 3620435 -120455737 - B1F SINE Alu -17 132 2 1 612 1383 181 82 0 chr9 3620666 3620958 -120455214 + Lx2A1 LINE L1 6687 7002 -6 1 612 758 249 383 0 chr9 3621586 3621860 -120454312 - MTEa LTR MaLR 0 379 1 1 612 282 295 0 0 chr9 3622710 3622771 -120453401 - LTR16A LTR ERVL 0 451 391 1 612 257 306 232 8 chr9 3622788 3622913 -120453259 - MLT1F-int LTR MaLR -361 1128 976 1 612 219 337 80 84 chr9 3623391 3623666 -120452506 + L3 LINE CR1 4134 4407 -82 1 612 269 140 18 0 chr9 3624684 3624741 -120451431 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 1 612 270 292 0 9 chr9 3625132 3625239 -120450933 + (TTTA)n Simple_repeat Simple_repeat 2 107 0 1 612 193 354 143 42 chr9 3625896 3626064 -120450108 - L2 LINE L2 -516 2903 2719 1 612 867 53 0 0 chr9 3626835 3626948 -120449224 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 1 612 26 0 0 0 chr9 3627283 3627309 -120448863 + AT_rich Low_complexity Low_complexity 1 26 0 1 612 31369 56 4 18 chr9 3627309 3632222 -120443950 - L1Md_F2 LINE L1 -14 6568 1728 1 612 220 122 0 24 chr9 3632267 3632309 -120443863 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 612 1755 168 36 33 chr9 3632382 3632746 -120443426 + Lx4A LINE L1 6693 7057 -1 1 612 360 200 55 11 chr9 3632752 3632843 -120443329 + L1_Mur2 LINE L1 3334 3428 -2452 1 612 6245 121 8 17 chr9 3632890 3633846 -120442326 - Lx LINE L1 -2 6652 5705 1 612 1207 177 18 0 chr9 3633845 3634071 -120442101 + L1_Mur2 LINE L1 4627 4856 -1021 1 612 350 365 77 11 chr9 3634169 3634352 -120441820 - B3A SINE B2 -2 196 2 1 612 23 54 0 0 chr9 3637433 3637470 -120438702 + AT_rich Low_complexity Low_complexity 1 37 0 1 612 623 153 30 0 chr9 3637758 3637889 -120438283 - Lx3_Mus LINE L1 0 7009 6875 1 612 1729 219 5 73 chr9 3638038 3638437 -120437735 - ORR1C1 LTR MaLR -6 372 1 1 612 2995 243 79 105 chr9 3638438 3639986 -120436186 - ORR1C1-int LTR MaLR -1 1508 1 1 612 1724 195 45 58 chr9 3639988 3640369 -120435803 - ORR1C1 LTR MaLR -2 376 1 1 612 27 0 0 0 chr9 3640380 3640407 -120435765 + AT_rich Low_complexity Low_complexity 1 27 0 1 612 421 293 171 6 chr9 3640408 3640583 -120435589 - B3 SINE B2 -10 206 3 1 612 333 320 16 47 chr9 3641044 3641172 -120435000 - MTEa LTR MaLR -3 376 253 1 612 25 0 0 0 chr9 3641208 3641233 -120434939 + AT_rich Low_complexity Low_complexity 1 25 0 1 612 4533 146 13 9 chr9 3641239 3642013 -120434159 - Lx3C LINE L1 0 6976 6200 1 612 3206 75 23 0 chr9 3642013 3642441 -120433731 + L1_Mus1 LINE L1 6093 6530 -37 1 612 1241 94 0 0 chr9 3642439 3642610 -120433562 - L1_Mm LINE L1 -807 5076 4906 1 612 4576 157 7 11 chr9 3642604 3643414 -120432758 - L1_Mur1 LINE L1 -83 5803 4997 1 612 237 108 0 0 chr9 3643961 3643998 -120432174 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 612 18243 98 20 36 chr9 3644376 3646731 -120429441 - Lx3_Mus LINE L1 0 7009 4645 1 612 236 30 30 0 chr9 3646731 3646764 -120429408 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 612 18243 102 17 82 chr9 3646764 3647567 -120428605 - Lx3_Mus LINE L1 -1242 4644 3833 1 612 3464 20 2 0 chr9 3647567 3647962 -120428210 + MTA_Mm LTR MaLR 1 396 0 1 612 9255 28 2 2 chr9 3647962 3649060 -120427112 + MTA_Mm-int LTR MaLR 1 1098 0 1 612 1060 24 0 0 chr9 3649060 3649186 -120426986 + MTA_Mm LTR MaLR 1 126 -270 1 612 860 38 0 0 chr9 3649181 3649286 -120426886 + MTA_Mm LTR MaLR 292 396 0 1 612 18243 102 17 82 chr9 3649286 3649786 -120426386 - Lx3_Mus LINE L1 -2154 3732 3313 1 612 5576 33 0 0 chr9 3649786 3650445 -120425727 - L1Md_T LINE L1 0 6582 5924 1 612 18243 102 17 82 chr9 3650445 3650884 -120425288 - Lx3_Mus LINE L1 -2574 3312 2876 1 612 27566 92 12 6 chr9 3650893 3652320 -120423852 - L1_Mus1 LINE L1 0 6567 5140 1 612 1226 48 0 12 chr9 3652320 3652489 -120423683 - L1Md_F2 LINE L1 -2 6580 6414 1 612 27566 125 2 11 chr9 3652489 3656168 -120420004 - L1_Mus1 LINE L1 -744 5139 1489 1 612 10602 70 11 2 chr9 3656167 3658274 -120417898 - L1Md_F2 LINE L1 -13 6569 4445 1 612 288 0 0 0 chr9 3658274 3658306 -120417866 + (T)n Simple_repeat Simple_repeat 1 32 0 1 612 31726 50 63 1 chr9 3658317 3663637 -120412535 - L1Md_T LINE L1 0 6582 909 1 612 21 0 0 0 chr9 3663680 3663701 -120412471 + AT_rich Low_complexity Low_complexity 1 21 0 1 612 5119 223 34 9 chr9 3663896 3665336 -120410836 - Lx5 LINE L1 -4 7054 5500 1 612 3219 163 32 29 chr9 3665340 3666315 -120409857 - L1_Mur2 LINE L1 -3953 1924 956 1 612 6193 102 27 8 chr9 3667269 3668658 -120407514 + L1VL4 LINE L1 397 1818 -1741 1 76 6086 168 8 15 chr9 3668659 3670048 -120406124 + Lx2 LINE L1 5266 6643 -354 1 613 1051 169 32 27 chr9 3670048 3670267 -120405905 + Lx LINE L1 6427 6646 -8 1 613 21 95 0 0 chr9 3670825 3670888 -120405284 + AT_rich Low_complexity Low_complexity 1 63 0 1 613 366 357 0 16 chr9 3672521 3672649 -120403523 - B3 SINE B2 -87 129 4 1 613 5779 76 0 4 chr9 3673042 3673804 -120402368 + L1Md_F2 LINE L1 5824 6582 0 1 613 690 243 7 27 chr9 3674453 3674601 -120401571 + B1_Mur2 SINE Alu 4 148 -1 1 613 354 107 0 0 chr9 3674611 3674667 -120401505 + (A)n Simple_repeat Simple_repeat 1 56 0 1 613 35732 54 1 17 chr9 3674707 3680080 -120396092 + L1Md_A LINE L1 305 5586 -297 1 613 8338 34 1 0 chr9 3680081 3681074 -120395098 + L1Md_A LINE L1 5588 6581 -1 1 613 529 174 0 0 chr9 3681258 3681344 -120394828 - B3 SINE B2 -128 88 3 1 613 22024 176 25 16 chr9 3681384 3683427 -120392745 - Lx LINE L1 0 6654 4568 1 613 2953 38 0 0 chr9 3683427 3683773 -120392399 + ORR1A0 LTR MaLR 1 346 0 1 613 22024 183 25 16 chr9 3683773 3687247 -120388925 - Lx LINE L1 -1319 4567 1095 1 613 14476 114 7 8 chr9 3687244 3690278 -120385894 - L1_Mus2 LINE L1 -1 6565 3533 1 613 3798 50 2 2 chr9 3691032 3691510 -120384662 - L1Md_F2 LINE L1 -1 6581 6104 1 613 5578 48 1 1 chr9 3691510 3692438 -120383734 + L1Md_F2 LINE L1 5200 6127 -455 1 613 13889 130 4 13 chr9 3692437 3694422 -120381750 - L1_Mus2 LINE L1 -2335 3548 1589 1 613 351 0 0 0 chr9 3694422 3694461 -120381711 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 613 13889 155 4 72 chr9 3694461 3695389 -120380783 - L1_Mus2 LINE L1 -4295 1588 725 1 613 388 275 15 8 chr9 3695399 3695531 -120380641 - L1_Mus2 LINE L1 -5815 801 669 1 613 427 284 63 142 chr9 3695591 3695923 -120380249 - L1VL1 LINE L1 -6060 362 57 1 613 905 135 72 139 chr9 3695923 3696146 -120380026 - RLTR9C LTR ERVK 0 393 186 1 613 871 294 50 129 chr9 3697466 3697807 -120378365 + MTE2a LTR MaLR 1 315 -64 1 613 1076 62 67 18 chr9 3697807 3697971 -120378201 - L1Md_F2 LINE L1 0 6582 6411 1 613 871 294 50 129 chr9 3697971 3698032 -120378140 + MTE2a LTR MaLR 316 371 -8 1 613 2406 106 62 84 chr9 3698102 3698588 -120377584 - IAPLTR2_Mm LTR ERVK 0 475 1 1 613 5887 46 4 29 chr9 3698590 3699353 -120376819 - IAPEz-int LTR ERVK -2 6479 5736 1 613 2228 65 0 0 chr9 3699352 3699630 -120376542 - IAPEz-int LTR ERVK -4845 1636 1359 1 613 3556 61 1 16 chr9 3699630 3700208 -120375964 - IAPEz-int LTR ERVK -5819 662 168 1 613 245 309 0 0 chr9 3700208 3700263 -120375909 - RLTR27 LTR ERVK -34 275 221 1 613 903 110 14 146 chr9 3700263 3700476 -120375696 - IAPEz-int LTR ERVK -6288 193 9 1 613 2372 126 49 72 chr9 3700477 3700963 -120375209 - IAPLTR2_Mm LTR ERVK 0 475 1 1 613 792 239 156 37 chr9 3702078 3702321 -120373851 - Lx6 LINE L1 -176 7284 7013 1 613 9512 217 89 122 chr9 3702320 3704777 -120371395 - L1_Mur3 LINE L1 -751 5129 2521 1 613 454 225 0 0 chr9 3704777 3704857 -120371315 + RMER6C LTR ERVK 1 80 -610 1 613 1209 205 107 38 chr9 3704848 3705167 -120371005 + RMER6C LTR ERVK 350 690 0 1 613 9512 217 89 122 chr9 3705167 3706700 -120369472 - L1_Mur3 LINE L1 -751 2520 892 1 613 620 331 48 4 chr9 3707475 3707745 -120368427 - B4A SINE B4 -10 282 1 1 613 278 300 12 0 chr9 3707980 3708060 -120368112 - L1MCa LINE L1 -4389 2119 2039 1 613 198 97 0 0 chr9 3708187 3708206 -120367966 + (CA)n Simple_repeat Simple_repeat 1 19 0 1 613 372 46 61 15 chr9 3708206 3708272 -120367900 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 1 613 198 97 0 0 chr9 3708272 3708283 -120367889 + (CA)n Simple_repeat Simple_repeat 2 12 0 1 613 22685 115 19 13 chr9 3709448 3713856 -120362316 - L1_Mus1 LINE L1 -1 6569 2137 1 613 699 240 135 22 chr9 3713857 3714173 -120361999 - L1_Mus1 LINE L1 -5738 881 530 1 613 192 40 0 0 chr9 3714201 3714226 -120361946 + (T)n Simple_repeat Simple_repeat 1 25 0 1 613 284 305 12 12 chr9 3715199 3715282 -120360890 + MTEa LTR MaLR 8 90 -284 1 613 706 168 52 37 chr9 3715356 3715492 -120360680 - B1_Mur3 SINE Alu -1 148 11 1 613 496 275 126 6 chr9 3715494 3715671 -120360501 + MTEa LTR MaLR 149 360 -19 1 613 1191 69 0 0 chr9 3716076 3716251 -120359921 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 1 613 366 336 124 49 chr9 3716463 3716810 -120359362 + MLT1A LTR MaLR 2 374 0 1 613 1130 76 0 0 chr9 3717234 3717379 -120358793 - B1_Mm SINE Alu -1 146 2 1 613 237 119 0 0 chr9 3717914 3717956 -120358216 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 613 186 43 0 0 chr9 3720385 3720408 -120355764 + (TTATA)n Simple_repeat Simple_repeat 5 27 0 1 613 206 118 0 0 chr9 3720599 3720633 -120355539 + (A)n Simple_repeat Simple_repeat 1 34 0 1 613 327 335 76 4 chr9 3720826 3721051 -120355121 - L1MC1 LINE L1 -4 6329 6089 2 613 564 271 34 0 chr9 3721134 3721311 -120354861 - L1MC1 LINE L1 -462 5871 5689 2 613 764 280 128 9 chr9 3721708 3722029 -120354143 - L1MC1 LINE L1 -639 5694 5336 2 613 216 0 0 0 chr9 3722048 3722072 -120354100 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 2 613 7473 138 82 7 chr9 3722076 3723040 -120353132 - Lx3A LINE L1 -10 6971 5913 2 613 477 0 0 0 chr9 3723040 3723093 -120353079 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 2 613 7678 162 38 107 chr9 3723093 3724613 -120351559 - Lx3A LINE L1 -1069 5912 4664 2 613 1220 121 14 5 chr9 3724613 3724851 -120351321 + L1_Mus3 LINE L1 6414 6638 0 2 613 7678 169 27 134 chr9 3724851 3725522 -120350650 - Lx3A LINE L1 -1223 4663 3999 2 613 303 28 0 0 chr9 3725522 3725558 -120350614 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 613 7678 169 27 134 chr9 3725558 3725840 -120350332 - Lx3A LINE L1 -1888 3998 3704 2 613 4122 126 8 8 chr9 3726589 3727245 -120348927 - L1_Mus3 LINE L1 -6 6632 5977 2 613 1814 96 23 0 chr9 3727245 3727506 -120348666 + L1_Mm LINE L1 4233 4499 -1384 2 613 2670 206 148 24 chr9 3727509 3728287 -120347885 - Lx3A LINE L1 -2404 3473 2600 2 613 361 343 20 0 chr9 3728293 3728395 -120347777 - ID_B1 SINE B4 -120 104 1 2 613 4449 184 23 13 chr9 3728718 3729590 -120346582 - Lx2B LINE L1 0 7000 6120 2 613 2859 78 21 17 chr9 3729801 3730220 -120345952 - BGLII LTR ERVK 0 421 1 2 613 384 40 0 0 chr9 3730236 3730286 -120345886 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 613 10524 92 0 1 chr9 3731000 3732464 -120343708 + L1_Mm LINE L1 3815 5277 -606 2 613 4593 99 0 15 chr9 3732482 3733161 -120343011 + L1Md_F2 LINE L1 5909 6577 -5 2 613 258 32 0 0 chr9 3733203 3733234 -120342938 + (A)n Simple_repeat Simple_repeat 1 31 0 2 613 6157 128 60 19 chr9 3733556 3733922 -120342250 - Lx LINE L1 -18 6636 6215 2 613 504 0 0 0 chr9 3733922 3733978 -120342194 + (CATTT)n Simple_repeat Simple_repeat 3 58 0 2 613 6157 135 60 19 chr9 3733978 3734645 -120341527 - Lx LINE L1 -440 6214 5587 2 613 365 226 102 27 chr9 3734668 3734854 -120341318 + RMER17C LTR ERVK 78 277 -133 2 613 401 225 50 65 chr9 3735756 3735956 -120340216 - L1MDb LINE L1 -5152 1257 1061 2 613 445 360 22 17 chr9 3735986 3736167 -120340005 - B3 SINE B2 -27 189 8 2 613 1913 257 57 2 chr9 3736187 3736628 -120339544 - Lx6 LINE L1 -6 7454 6990 2 613 406 226 10 10 chr9 3736633 3736736 -120339436 - L1MDb LINE L1 -5334 1075 973 2 613 36 91 0 0 chr9 3737337 3737436 -120338736 + AT_rich Low_complexity Low_complexity 1 99 0 2 613 1034 318 143 46 chr9 3737456 3738168 -120338004 - RMER13A LTR ERVK -66 794 14 2 613 21 0 0 0 chr9 3738516 3738537 -120337635 + AT_rich Low_complexity Low_complexity 1 21 0 2 613 22 0 0 0 chr9 3739027 3739049 -120337123 + AT_rich Low_complexity Low_complexity 1 22 0 2 613 20082 123 43 22 chr9 3739153 3741545 -120334627 - L1_Mus2 LINE L1 0 6566 4134 2 613 189 0 0 0 chr9 3741545 3741566 -120334606 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 613 20082 138 40 22 chr9 3741566 3743215 -120332957 - L1_Mus2 LINE L1 -1750 4133 2466 2 613 1098 89 0 0 chr9 3743215 3743361 -120332811 - B1_Mm SINE Alu -1 146 1 2 613 20082 138 40 22 chr9 3743361 3743547 -120332625 - L1_Mus2 LINE L1 -3418 2465 2251 2 613 35040 47 0 3 chr9 3743543 3748762 -120327410 + L1Md_T LINE L1 290 5589 -297 2 613 8410 33 0 0 chr9 3748762 3749758 -120326414 + L1Md_T LINE L1 5590 6585 0 2 613 6293 130 19 14 chr9 3749769 3751354 -120324818 - L1_Mus2 LINE L1 -3614 2269 667 2 613 243 186 58 10 chr9 3751440 3751543 -120324629 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 613 314 297 36 9 chr9 3751551 3751663 -120324509 + L1MCa LINE L1 1889 2003 -4505 2 613 836 276 71 20 chr9 3752014 3752269 -120323903 - Lx6 LINE L1 -3 7457 7190 2 613 474 18 0 0 chr9 3752270 3752325 -120323847 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 613 7050 133 39 11 chr9 3753212 3754404 -120321768 - Lx3A LINE L1 -3 6978 5753 2 613 11028 106 35 122 chr9 3754404 3755540 -120320632 - L1_Mur1 LINE L1 -2519 3367 2212 2 613 1757 40 48 13 chr9 3755540 3755767 -120320405 - L1_Mus1 LINE L1 0 6567 6333 2 613 11028 106 35 122 chr9 3755767 3755878 -120320294 - L1_Mur1 LINE L1 -3675 2211 2072 2 613 189 0 0 0 chr9 3755878 3755899 -120320273 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2 613 11028 106 35 122 chr9 3755899 3756044 -120320128 - L1_Mur1 LINE L1 -3815 2071 1928 2 613 557 216 8 46 chr9 3756044 3756205 -120319967 - RMER17A2 LTR ERVK -4 902 598 2 613 571 81 81 0 chr9 3756214 3756300 -120319872 - RMER17A LTR ERVK -658 93 1 2 613 11028 106 35 122 chr9 3756300 3756976 -120319196 - L1_Mur1 LINE L1 -3815 1919 1245 2 613 3521 116 6 6 chr9 3756981 3757503 -120318669 - Lx3_Mus LINE L1 -2 7007 6486 2 613 1415 89 0 0 chr9 3757503 3757694 -120318478 + Lx3_Mus LINE L1 6277 6467 -542 2 613 5277 141 80 41 chr9 3757690 3758718 -120317454 - L1_Mur1 LINE L1 -5710 1272 205 2 613 479 95 14 0 chr9 3759973 3760047 -120316125 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 613 574 47 23 12 chr9 3761178 3761264 -120314908 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 2 613 29 0 0 0 chr9 3761460 3761489 -120314683 + AT_rich Low_complexity Low_complexity 1 29 0 2 613 544 374 28 9 chr9 3762035 3762251 -120313921 + B4A SINE B4 55 274 -18 2 613 248 104 44 15 chr9 3763022 3763090 -120313082 + T-rich Low_complexity Low_complexity 1 70 0 2 613 747 113 186 0 chr9 3763111 3763235 -120312937 - B1_Mus1 SINE Alu 0 148 2 2 613 1116 97 16 0 chr9 3763518 3763704 -120312468 - MusHAL1 LINE L1 -8 2704 2516 2 613 27186 164 29 76 chr9 3763742 3764956 -120311216 + L1_Mus2 LINE L1 431 1534 -4349 2 613 4518 39 0 0 chr9 3764956 3765493 -120310679 - L1Md_T LINE L1 -1 6581 6045 2 613 27186 124 43 7 chr9 3765493 3765926 -120310246 + L1_Mus2 LINE L1 1535 2070 -3813 2 613 261 0 0 0 chr9 3765926 3765955 -120310217 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 613 27186 121 38 5 chr9 3765955 3770376 -120305796 + L1_Mus2 LINE L1 2071 6566 0 2 613 269 293 25 51 chr9 3770572 3770651 -120305521 - RSINE1 SINE B4 -2 163 87 2 613 5733 99 27 0 chr9 3770659 3771477 -120304695 - Lx3_Mus LINE L1 -6 7003 6164 2 613 812 296 82 3 chr9 3772831 3773123 -120303049 + RLTR16 LTR ERVK 1 315 -190 2 613 11432 99 7 2 chr9 3773135 3775518 -120300654 - L1_Mus1 LINE L1 0 6567 4173 2 613 2397 184 35 89 chr9 3775513 3776816 -120299356 - L1Md_F LINE L1 -2390 1427 180 2 613 258 250 41 117 chr9 3776880 3777025 -120299147 + RLTR16 LTR ERVK 360 493 -12 2 613 831 350 37 21 chr9 3777418 3777764 -120298408 - ORR1E LTR MaLR 0 379 10 2 613 279 317 8 32 chr9 3777840 3777911 -120298261 + Lx6 LINE L1 7151 7218 -242 2 613 2181 124 8 25 chr9 3777911 3778275 -120297897 - L1_Mus3 LINE L1 -10 6628 6271 2 613 279 317 8 32 chr9 3778275 3778327 -120297845 + Lx6 LINE L1 7219 7271 -189 2 613 321 366 0 0 chr9 3779117 3779240 -120296932 + (TG)n Simple_repeat Simple_repeat 2 124 0 2 613 7455 85 10 3 chr9 3779893 3780922 -120295250 + L1_Mus3 LINE L1 5603 6638 0 2 613 6997 172 75 7 chr9 3781009 3782518 -120293654 - Lx2 LINE L1 -3 6994 5402 2 613 3168 114 26 12 chr9 3782528 3783035 -120293137 - L1_Mus4 LINE L1 -1 6635 6122 2 613 4945 83 43 28 chr9 3783035 3783519 -120292653 - RLTR22_Mus LTR ERVK 0 1808 1309 2 613 516 59 0 0 chr9 3783519 3783587 -120292585 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 613 4945 83 43 28 chr9 3783587 3783842 -120292330 - RLTR22_Mus LTR ERVK -500 1308 1058 2 613 3897 74 0 0 chr9 3783838 3784351 -120291821 - RLTR22_Mus LTR ERVK -1295 513 1 2 613 3303 114 114 18 chr9 3784351 3785113 -120291059 - L1_Mus4 LINE L1 -509 6127 5306 2 613 318 157 0 0 chr9 3785116 3785167 -120291005 + L1_Mm LINE L1 5544 5594 -289 2 613 381 170 0 8 chr9 3785149 3785233 -120290939 - L1_Mur2 LINE L1 -994 5450 5352 2 613 189 74 0 0 chr9 3785233 3785260 -120290912 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 2 613 1845 225 10 3 chr9 3785261 3785653 -120290519 - Lx4A LINE L1 -7 7051 6657 2 613 323 308 30 54 chr9 3785653 3785821 -120290351 - RNLTR23 LTR ERVK -2 640 477 2 613 2474 203 55 37 chr9 3786110 3786677 -120289495 - Lx4A LINE L1 -394 6664 6088 2 613 5512 189 25 22 chr9 3786684 3787406 -120288766 - L1_Mur2 LINE L1 -520 5357 4636 2 613 354 45 0 0 chr9 3787406 3787450 -120288722 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 2 613 5512 189 25 22 chr9 3787450 3787809 -120288363 - L1_Mur2 LINE L1 -1242 4635 4272 2 613 816 108 0 41 chr9 3787809 3787954 -120288218 - L1Md_F2 LINE L1 -4 6578 6440 2 613 5512 189 25 22 chr9 3787954 3788096 -120288076 - L1_Mur2 LINE L1 -1606 4271 4131 2 613 1873 178 46 42 chr9 3788096 3788572 -120287600 - RMER17D2 LTR ERVK 0 809 332 2 613 28110 112 8 16 chr9 3788611 3790936 -120285236 - L1_Mus2 LINE L1 0 6566 4211 2 613 333 0 0 0 chr9 3790936 3790973 -120285199 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 613 28110 117 12 19 chr9 3790973 3794862 -120281310 - L1_Mus2 LINE L1 -1673 4210 402 2 613 2580 179 6 95 chr9 3794860 3796045 -120280127 - L1VL4 LINE L1 -2510 1307 297 2 613 22 35 0 0 chr9 3796311 3796340 -120279832 + AT_rich Low_complexity Low_complexity 1 29 0 2 613 210 71 0 0 chr9 3796482 3796510 -120279662 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 613 23 0 0 0 chr9 3796586 3796609 -120279563 + AT_rich Low_complexity Low_complexity 1 23 0 2 613 21 71 0 0 chr9 3796737 3796779 -120279393 + AT_rich Low_complexity Low_complexity 1 42 0 2 613 192 40 0 0 chr9 3797750 3797775 -120278397 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 613 899 194 83 26 chr9 3798198 3798426 -120277746 - Lx3C LINE L1 -2 6974 6734 2 613 3185 145 73 21 chr9 3798422 3798460 -120277712 - L1_Mur1 LINE L1 -556 5330 5289 2 613 279 0 0 0 chr9 3798460 3798491 -120277681 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 613 3185 145 73 21 chr9 3798491 3799107 -120277065 - L1_Mur1 LINE L1 -598 5288 4642 2 613 9251 203 95 9 chr9 3799104 3800058 -120276114 - L1_Mur1 LINE L1 -1710 4167 3094 2 613 2470 39 2 243 chr9 3800058 3800572 -120275600 + RLTR10 LTR ERVK 1 390 0 2 76 9251 203 95 9 chr9 3800572 3802020 -120274152 - L1_Mur1 LINE L1 -2784 3093 1557 2 614 39106 29 1 6 chr9 3802017 3808198 -120267974 - L1Md_T LINE L1 0 6582 441 2 614 3001 198 32 27 chr9 3808199 3809263 -120266909 - L1_Mur1 LINE L1 -4317 1569 518 2 614 1059 335 21 3 chr9 3809290 3809664 -120266508 - Lx8 LINE L1 -203 7270 6890 2 614 837 152 13 7 chr9 3809668 3809820 -120266352 - RLTR26 LTR ERVK 0 642 490 2 614 2925 148 21 47 chr9 3809808 3810366 -120265806 - RLTR26 LTR ERVK -98 544 1 2 614 901 294 23 39 chr9 3810378 3810686 -120265486 - Lx8 LINE L1 -590 6883 6581 2 614 544 324 98 0 chr9 3810699 3810943 -120265229 - Lx8 LINE L1 -1011 6462 6195 2 614 538 249 222 9 chr9 3811203 3811429 -120264743 + RMER1C Other Other 1069 1342 0 2 614 882 255 29 16 chr9 3813023 3813301 -120262871 - MTEa LTR MaLR -14 365 80 2 614 1153 325 40 24 chr9 3813977 3814532 -120261640 + L1_Mur3 LINE L1 17 689 -7039 2 614 1970 163 126 26 chr9 3814532 3815024 -120261148 + L1_Mur3 LINE L1 2175 2715 -3165 2 614 614 290 22 40 chr9 3815347 3815573 -120260599 + ID_B1 SINE B4 2 223 -1 2 614 369 322 112 82 chr9 3816096 3816292 -120259880 - MLT1C LTR MaLR -250 217 16 2 614 23 0 0 0 chr9 3817039 3817062 -120259110 + AT_rich Low_complexity Low_complexity 1 23 0 2 614 261 57 0 0 chr9 3817307 3817342 -120258830 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 614 3964 47 4 0 chr9 3817572 3818064 -120258108 - L1Md_F2 LINE L1 -4 6578 6085 2 614 218 24 0 211 chr9 3818074 3818178 -120257994 + (TTAAA)n Simple_repeat Simple_repeat 4 85 0 2 614 238 267 24 107 chr9 3818294 3818378 -120257794 - MT2B LTR ERVL -350 251 175 2 614 399 222 14 0 chr9 3818310 3818382 -120257790 - PB1D9 SINE Alu -41 79 7 3 614 629 209 253 11 chr9 3818452 3818626 -120257546 + B3 SINE B2 1 216 0 3 614 1658 217 110 17 chr9 3818884 3819376 -120256796 - RMER19C LTR ERVK -238 664 161 3 614 605 206 0 82 chr9 3821399 3821558 -120254614 + ORR1A4 LTR MaLR 1 146 -183 3 614 726 165 16 0 chr9 3821820 3821947 -120254225 + B1_Mur4 SINE Alu 3 131 -19 3 614 252 0 0 0 chr9 3821951 3821979 -120254193 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 614 257 190 17 0 chr9 3821981 3822039 -120254133 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3 614 608 136 24 8 chr9 3823058 3823184 -120252988 + GA-rich Low_complexity Low_complexity 3 130 0 3 614 1290 67 0 0 chr9 3823184 3823544 -120252628 + (GAA)n Simple_repeat Simple_repeat 1 360 0 3 614 210 143 0 0 chr9 3823851 3823886 -120252286 + (CTTA)n Simple_repeat Simple_repeat 4 38 0 3 614 6411 220 42 16 chr9 3823887 3824929 -120251243 - Lx5 LINE L1 -2 7048 5958 3 614 3096 21 77 21 chr9 3824929 3825318 -120250854 + IAPLTR2a LTR ERVK 1 411 0 3 614 6411 220 42 16 chr9 3825318 3825407 -120250765 - Lx5 LINE L1 -1093 5957 5873 3 614 3456 23 2 0 chr9 3825407 3825802 -120250370 + MTA_Mm LTR MaLR 1 396 0 3 614 6411 206 2 31 chr9 3825802 3826323 -120249849 - Lx5 LINE L1 -1178 5872 5366 3 614 437 127 28 0 chr9 3826325 3826396 -120249776 + ORR1A4 LTR MaLR 274 346 0 3 614 2098 232 54 137 chr9 3826446 3827102 -120249070 + L1Md_F LINE L1 263 963 -5675 3 614 3773 57 0 4 chr9 3827102 3827578 -120248594 + L1_Mus1 LINE L1 6092 6565 -2 3 614 2098 156 3 226 chr9 3827578 3827928 -120248244 + L1Md_F LINE L1 946 1205 -5411 3 614 2782 28 6 3 chr9 3827928 3828254 -120247918 - IAPLTR2b LTR ERVK 0 327 1 3 614 20811 130 6 25 chr9 3828254 3830435 -120245737 + L1Md_F LINE L1 1155 3344 -2539 3 614 462 36 0 0 chr9 3830435 3830491 -120245681 + (CAGAA)n Simple_repeat Simple_repeat 5 60 0 3 614 20811 129 6 20 chr9 3830491 3831881 -120244291 + L1Md_F LINE L1 3345 4676 -1207 3 614 7032 83 25 1 chr9 3832053 3833005 -120243167 + L1_Mus1 LINE L1 5592 6566 -1 3 614 1035 203 0 5 chr9 3833016 3833229 -120242943 - L1VL4 LINE L1 -684 5202 4991 3 614 394 0 71 0 chr9 3833233 3833289 -120242883 + (TTTTA)n Simple_repeat Simple_repeat 3 62 0 3 614 12012 159 34 32 chr9 3833299 3834558 -120241614 - L1VL4 LINE L1 -1911 3975 2721 3 614 958 93 21 14 chr9 3834558 3834699 -120241473 - B1_Mus1 SINE Alu -2 146 5 3 614 12012 141 44 33 chr9 3834699 3836630 -120239542 - L1VL4 LINE L1 -1194 2720 769 3 614 7277 172 58 7 chr9 3836645 3838173 -120237999 - L1_Mur2 LINE L1 -1581 4296 2692 3 614 26488 84 5 2 chr9 3838193 3842942 -120233230 - L1Md_F LINE L1 -958 4925 163 3 614 1437 208 66 0 chr9 3843036 3843325 -120232847 + ORR1B1 LTR MaLR 3 310 -84 3 614 278 188 22 0 chr9 3843393 3843457 -120232715 + ORR1B1 LTR MaLR 276 392 -2 3 614 294 95 0 0 chr9 3843870 3843912 -120232260 + (T)n Simple_repeat Simple_repeat 1 42 0 3 614 36 40 0 0 chr9 3844255 3844305 -120231867 + AT_rich Low_complexity Low_complexity 1 50 0 3 614 805 178 99 25 chr9 3844361 3844563 -120231609 + Lx9 LINE L1 7181 7397 -247 3 614 255 292 0 0 chr9 3845072 3845144 -120231028 - RodERV21-int LTR ERV1 -467 4524 4453 3 614 3519 117 12 39 chr9 3846067 3846637 -120229535 - Lx LINE L1 -1 6653 6099 3 614 246 32 0 0 chr9 3846925 3846956 -120229216 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 614 1694 198 33 17 chr9 3847045 3847405 -120228767 - ORR1B2 LTR MaLR -1 366 1 3 614 327 314 41 41 chr9 3847858 3848004 -120228168 - RLTR14 LTR ERV1 -13 369 224 3 614 7986 55 5 1 chr9 3848053 3849546 -120226626 - L1Md_F2 LINE L1 -3 6579 5078 3 614 192 274 48 0 chr9 3849707 3849769 -120226403 + L2c LINE L2 3323 3387 0 3 614 206 67 41 82 chr9 3849799 3849848 -120226324 + T-rich Low_complexity Low_complexity 5 51 0 3 614 918 237 14 19 chr9 3850153 3850368 -120225804 - URR1B DNA MER1_type 0 225 12 3 614 387 0 0 0 chr9 3850429 3850472 -120225700 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 614 19108 91 81 3 chr9 3851992 3853455 -120222717 - L1_Mus1 LINE L1 0 6567 5041 3 614 1062 96 0 0 chr9 3853455 3853601 -120222571 - B1_Mus1 SINE Alu -2 146 1 3 614 19108 125 213 7 chr9 3853601 3857197 -120218975 - L1_Mus1 LINE L1 -843 5040 584 3 614 267 230 0 0 chr9 3857559 3857646 -120218526 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 614 550 0 29 0 chr9 3858852 3858922 -120217250 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 3 614 26 74 0 0 chr9 3860672 3860726 -120215446 + AT_rich Low_complexity Low_complexity 1 54 0 3 614 282 125 0 0 chr9 3860964 3861012 -120215160 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 614 767 251 87 115 chr9 3861013 3861439 -120214733 - MT2A LTR ERVL -60 541 1 3 614 496 209 13 73 chr9 3861439 3861589 -120214583 - MERVL_2A-int LTR ERVL 0 5761 5621 3 614 227 246 56 42 chr9 3861589 3861661 -120214511 - ORR1A3-int LTR MaLR -1339 624 552 3 614 1989 166 48 0 chr9 3861661 3862035 -120214137 - MERVL_2A-int LTR ERVL -144 5617 5226 3 614 2576 209 87 3 chr9 3862029 3863264 -120212908 - MERVL_2A-int LTR ERVL -848 4913 3575 3 614 2674 106 19 0 chr9 3864220 3864597 -120211575 - Lx3_Mus LINE L1 -280 6729 6346 3 614 259 143 29 0 chr9 3864598 3864668 -120211504 + Lx3A LINE L1 6903 6974 -7 3 614 284 205 23 35 chr9 3864686 3864719 -120211453 + (CATATA)n Simple_repeat Simple_repeat 4 37 0 3 614 464 295 16 69 chr9 3864719 3864908 -120211264 + B3A SINE B2 5 183 -15 3 614 284 205 23 35 chr9 3864908 3864960 -120211212 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 3 614 401 230 120 0 chr9 3865124 3865224 -120210948 + B3 SINE B2 2 113 -103 3 614 198 0 0 0 chr9 3865224 3865246 -120210926 + (A)n Simple_repeat Simple_repeat 1 22 0 3 614 22 35 0 0 chr9 3865270 3865299 -120210873 + AT_rich Low_complexity Low_complexity 1 29 0 3 614 264 374 19 37 chr9 3866015 3866176 -120209996 + L2a LINE L2 3269 3426 0 3 614 26 64 0 0 chr9 3866890 3866937 -120209235 + AT_rich Low_complexity Low_complexity 1 47 0 3 614 21 57 0 0 chr9 3866999 3867034 -120209138 + AT_rich Low_complexity Low_complexity 1 35 0 3 614 24 0 0 0 chr9 3867608 3867632 -120208540 + AT_rich Low_complexity Low_complexity 1 24 0 3 614 22 0 0 0 chr9 3867668 3867690 -120208482 + AT_rich Low_complexity Low_complexity 1 22 0 3 614 2022 123 6 66 chr9 3867885 3868233 -120207939 - ORR1A2 LTR MaLR 0 327 1 3 614 182 361 128 0 chr9 3868411 3868544 -120207628 + MIR SINE MIR 36 185 -77 3 614 187 54 54 0 chr9 3869394 3869431 -120206741 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 614 480 18 0 0 chr9 3871090 3871147 -120205025 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 614 2369 138 91 0 chr9 3871148 3871532 -120204640 - RLTR9B2 LTR ERVK -1 419 1 3 614 394 87 68 68 chr9 3871533 3871607 -120204565 - ETnERV2-int LTR ERVK -2 7404 7331 3 614 317 130 19 0 chr9 3871821 3871875 -120204297 - ETnERV2-int LTR ERVK -981 6425 6371 3 614 185 61 30 0 chr9 3871880 3871899 -120204273 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 3 614 1021 73 51 0 chr9 3871899 3872036 -120204136 + B1_Mm SINE Alu 4 147 0 3 614 185 61 30 0 chr9 3872036 3872049 -120204123 + (CAAA)n Simple_repeat Simple_repeat 3 15 0 3 614 637 236 56 29 chr9 3872054 3872362 -120203810 - ETnERV2-int LTR ERVK -1041 6365 6102 3 614 12179 207 92 76 chr9 3872378 3873186 -120202986 - RMER16-int LTR ERVK -1233 4173 3315 3 614 369 0 0 0 chr9 3873186 3873227 -120202945 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 3 614 12179 207 92 76 chr9 3873227 3875839 -120200333 - RMER16-int LTR ERVK -2092 3314 788 3 614 237 33 0 0 chr9 3875839 3875869 -120200303 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 614 12179 207 92 76 chr9 3875869 3876250 -120199922 - RMER16-int LTR ERVK -4619 787 313 3 614 218 109 65 0 chr9 3876273 3876319 -120199853 + T-rich Low_complexity Low_complexity 1 49 0 3 614 347 286 60 79 chr9 3876362 3876628 -120199544 - RMER16-int LTR ERVK -3050 264 4 3 614 2360 138 89 0 chr9 3876630 3877013 -120199159 - RLTR9B2 LTR ERVK 0 420 4 3 614 261 0 0 0 chr9 3877013 3877042 -120199130 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 614 4868 169 56 37 chr9 3877051 3877991 -120198181 - RMER17B LTR ERVK 0 958 1 3 614 451 221 67 0 chr9 3877999 3878103 -120198069 - Lx7 LINE L1 -304 7392 7282 3 614 622 178 33 17 chr9 3878103 3878223 -120197949 + B1_Mus1 SINE Alu 2 123 -25 3 614 212 331 74 68 chr9 3878223 3878265 -120197907 + B4A SINE B4 87 249 -43 3 614 282 349 28 0 chr9 3878942 3879048 -120197124 + PB1D10 SINE Alu 2 110 -7 3 614 6311 85 3 0 chr9 3879309 3881007 -120195165 + L1Md_F LINE L1 415 2118 -3765 3 614 33928 39 1 112 chr9 3881016 3886327 -120189845 - L1Md_T LINE L1 0 6585 1873 3 614 216 0 0 0 chr9 3886327 3886351 -120189821 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 614 33928 45 1 124 chr9 3886351 3887171 -120189001 - L1Md_T LINE L1 -4014 1872 1173 3 614 5113 148 69 75 chr9 3887177 3888291 -120187881 - L1Md_T LINE L1 -5411 1208 102 3 614 1026 232 18 9 chr9 3888263 3888555 -120187617 - L1Md_T LINE L1 -6025 497 107 3 614 8538 85 4 1 chr9 3888550 3889745 -120186427 + L1_Mm LINE L1 2103 3301 -2582 3 614 4549 65 2 0 chr9 3889746 3890330 -120185842 + L1Md_F2 LINE L1 5986 6570 -12 3 614 1351 114 14 5 chr9 3890896 3891116 -120185056 + L1_Mus3 LINE L1 6413 6634 -4 3 614 21 0 0 0 chr9 3891116 3891137 -120185035 + AT_rich Low_complexity Low_complexity 1 21 0 3 614 266 0 29 0 chr9 3893574 3893608 -120182564 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 614 237 179 14 43 chr9 3900385 3900455 -120175717 + T-rich Low_complexity Low_complexity 3 70 0 3 614 32 57 0 0 chr9 3903993 3904046 -120172126 + AT_rich Low_complexity Low_complexity 1 53 0 3 614 624 27 0 0 chr9 3904346 3904420 -120171752 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 3 614 641 148 16 0 chr9 3904426 3904548 -120171624 + CT-rich Low_complexity Low_complexity 2 125 0 3 614 24 32 0 0 chr9 3905242 3905273 -120170899 + AT_rich Low_complexity Low_complexity 1 31 0 3 614 318 299 20 40 chr9 3906670 3906771 -120169401 - MTE2b LTR MaLR -280 99 1 3 614 25 0 0 0 chr9 3906891 3906916 -120169256 + AT_rich Low_complexity Low_complexity 1 25 0 3 614 198 0 0 0 chr9 3907127 3907149 -120169023 + (A)n Simple_repeat Simple_repeat 1 22 0 3 614 23 33 0 0 chr9 3907401 3907431 -120168741 + AT_rich Low_complexity Low_complexity 1 30 0 3 614 3846 173 84 84 chr9 3908282 3909172 -120167000 + RMER19B LTR ERVK 1 890 -12 3 614 1770 214 107 5 chr9 3910661 3911036 -120165136 + MTC LTR MaLR 1 413 -8 3 614 262 256 64 28 chr9 3911037 3911178 -120164994 - L1MD LINE L1 -1696 4450 4305 3 614 468 0 0 0 chr9 3911179 3911231 -120164941 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 614 525 80 0 0 chr9 3911251 3911326 -120164846 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 3 614 22 0 0 0 chr9 3911643 3911665 -120164507 + AT_rich Low_complexity Low_complexity 1 22 0 3 614 15087 196 82 13 chr9 3912681 3914443 -120161729 + Lx2 LINE L1 478 2371 -3515 3 614 3306 40 2 5 chr9 3914443 3914840 -120161332 - MTA_Mm LTR MaLR 0 396 1 4 614 15087 183 34 12 chr9 3914840 3916956 -120159216 + Lx2 LINE L1 2372 4518 -1368 3 614 1837 210 2 25 chr9 3916970 3917371 -120158801 + Lx2 LINE L1 4906 5297 -580 3 614 1284 175 28 66 chr9 3917372 3917660 -120158512 + Lx2 LINE L1 5870 6146 -851 3 614 2191 67 0 0 chr9 3917655 3917938 -120158234 - L1Md_F2 LINE L1 -558 6024 5742 4 614 3205 101 0 0 chr9 3917934 3918371 -120157801 + L1_Mus2 LINE L1 5934 6370 -196 4 614 22398 71 14 3 chr9 3918373 3919271 -120156901 + MERVL-int LTR ERVL 2455 3356 -2129 4 614 3246 43 13 3 chr9 3919271 3919663 -120156509 + MTA_Mm LTR MaLR 1 396 0 4 614 22398 71 14 3 chr9 3919663 3921635 -120154537 + MERVL-int LTR ERVL 3357 5356 -129 4 614 342 167 27 40 chr9 3921756 3921831 -120154341 + ORR1A3-int LTR MaLR 567 640 -1323 4 614 292 26 0 0 chr9 3921831 3921869 -120154303 + MERVL-int LTR ERVL 5448 5485 0 4 614 3477 73 26 0 chr9 3921869 3922332 -120153840 + MT2C_Mm LTR ERVL 1 475 0 4 614 651 324 80 83 chr9 3923362 3923749 -120152423 - MLT1B LTR MaLR -4 386 1 4 614 615 90 0 128 chr9 3924164 3924368 -120151804 + CT-rich Low_complexity Low_complexity 2 179 0 4 614 240 238 104 24 chr9 3924735 3924860 -120151312 + Charlie5 DNA MER1_type 2401 2535 -89 4 614 330 309 2 102 chr9 3925259 3925436 -120150736 + Lx7 LINE L1 7051 7221 -252 4 614 322 297 61 40 chr9 3925463 3925677 -120150495 + L1M5 LINE L1 5577 5802 -642 4 614 3664 128 91 26 chr9 3925894 3927106 -120149066 - L1_Mur1 LINE L1 -4098 1788 211 4 614 6703 115 27 18 chr9 3927110 3928218 -120147954 + L1_Mur1 LINE L1 2096 3213 -2673 4 76 28994 112 17 12 chr9 3928214 3933184 -120142988 + L1_Mus1 LINE L1 217 5234 -649 4 615 504 0 0 0 chr9 3933184 3933240 -120142932 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 615 28994 115 16 15 chr9 3933240 3933638 -120142534 + L1_Mus1 LINE L1 5235 5608 -275 4 615 1791 221 134 86 chr9 3933638 3934499 -120141673 + RLTR13D6 LTR ERVK 1 902 0 4 615 28994 97 6 8 chr9 3934499 3935453 -120140719 + L1_Mus1 LINE L1 5609 6567 0 4 615 10949 102 33 10 chr9 3935483 3936993 -120139179 + L1_Mur1 LINE L1 3185 4736 -1150 4 615 246 32 0 0 chr9 3936993 3937024 -120139148 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 615 10949 102 33 10 chr9 3937024 3937277 -120138895 + L1_Mur1 LINE L1 4737 4989 -897 4 615 5089 190 6 23 chr9 3937282 3937467 -120138705 + L1VL2 LINE L1 179 503 -5919 4 615 2542 49 0 146 chr9 3937467 3937872 -120138300 + ORR1A1 LTR MaLR 1 346 0 4 615 5089 140 30 12 chr9 3937872 3939192 -120136980 + L1VL2 LINE L1 345 1689 -2009 4 615 1990 168 140 80 chr9 3939192 3939743 -120136429 - RLTR6_Mm LTR ERV1 -70 584 1 4 615 41897 33 14 0 chr9 3939743 3947312 -120128860 - RLTR6-int LTR ERV1 0 7778 1 4 615 2115 113 253 28 chr9 3947313 3947776 -120128396 - RLTR6_Mm LTR ERV1 -51 603 37 4 615 260 148 246 0 chr9 3947821 3947882 -120128290 - RLTR6_Mm LTR ERV1 -578 76 1 4 615 962 135 25 30 chr9 3947882 3948080 -120128092 + L1VL2 LINE L1 1686 1882 -1816 4 615 15974 75 5 12 chr9 3948095 3951162 -120125010 + L1Md_F2 LINE L1 301 3282 -2601 4 615 3421 81 55 2 chr9 3951162 3951620 -120124552 - RLTR45 LTR ERVK 0 482 1 4 615 18694 47 4 2 chr9 3951620 3953811 -120122361 - RLTR45-int LTR ERVK 0 7244 5050 4 615 698 139 104 49 chr9 3953805 3953949 -120122223 - RLTR45-int LTR ERVK -3713 3531 3380 4 615 20913 50 47 4 chr9 3953921 3956974 -120119198 - RLTR45-int LTR ERVK -4033 3211 1 4 615 3504 72 57 2 chr9 3956974 3957431 -120118741 - RLTR45 LTR ERVK 0 482 1 4 615 18321 61 0 0 chr9 3957431 3959740 -120116432 + L1Md_F2 LINE L1 3277 5585 -298 4 615 8512 47 2 6 chr9 3959741 3960728 -120115444 + L1Md_F2 LINE L1 5587 6569 -13 4 615 459 0 0 0 chr9 3960734 3960785 -120115387 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 4 615 380 109 0 0 chr9 3960819 3960883 -120115289 + Lx LINE L1 6587 6650 -4 4 615 378 0 0 0 chr9 3960905 3960947 -120115225 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 615 5701 169 67 65 chr9 3960958 3962998 -120113174 + Lx3_Mus LINE L1 4980 7008 -1 4 615 1183 177 13 22 chr9 3963007 3963232 -120112940 + MurSatRep1 Unknown Unknown 7 229 -1908 4 615 565 302 85 84 chr9 3963249 3963854 -120112318 + RLTR18B LTR ERVK 7 608 -8 4 615 342 333 44 0 chr9 3964763 3964853 -120111319 - Tigger7 DNA MER2_type -2277 214 121 4 615 3347 47 10 0 chr9 3965244 3965630 -120110542 + RLTR10 LTR ERVK 1 390 0 4 615 1462 354 78 59 chr9 3965786 3966084 -120110088 - RodERV21-int LTR ERV1 -727 4264 3965 4 615 1225 68 0 20 chr9 3966084 3966234 -120109938 + B1_Mus1 SINE Alu 2 148 0 4 615 1462 354 78 59 chr9 3966234 3967454 -120108718 - RodERV21-int LTR ERV1 -1027 3964 2718 4 615 269 308 55 27 chr9 3967769 3967879 -120108293 - MMERGLN-int LTR ERV1 -2684 4872 4760 4 615 2242 72 36 3 chr9 3967933 3968240 -120107932 - IAPLTR2b LTR ERVK -10 317 1 4 615 357 345 14 0 chr9 3968626 3968774 -120107398 - MER52-int LTR ERV1 -1964 5127 4978 4 615 4561 26 12 1 chr9 3969357 3970015 -120106157 + L1Md_F2 LINE L1 5464 6128 -454 4 615 9118 94 14 6 chr9 3970005 3972021 -120104151 + L1_Mus1 LINE L1 4533 6566 -1 4 615 239 182 119 15 chr9 3972116 3972183 -120103989 + B1_Mur4 SINE Alu 64 137 -13 4 615 6234 122 59 21 chr9 3972628 3972744 -120103428 - Lx LINE L1 -7 6647 6520 4 615 651 88 0 0 chr9 3972744 3972835 -120103337 + (CCCA)n Simple_repeat Simple_repeat 3 93 0 4 615 11358 156 37 9 chr9 3972835 3976354 -120099818 - Lx LINE L1 -135 6519 1838 4 615 25 31 0 0 chr9 3976361 3976393 -120099779 + AT_rich Low_complexity Low_complexity 1 32 0 4 615 33 0 0 0 chr9 3976723 3976756 -120099416 + AT_rich Low_complexity Low_complexity 1 33 0 4 615 808 215 145 55 chr9 3976789 3977079 -120099093 + RLTR20C LTR ERVK 1 316 -218 4 615 471 292 79 53 chr9 3977072 3977129 -120099043 + RLTR20C LTR ERVK 423 491 -87 4 615 477 0 0 0 chr9 3977129 3977182 -120098990 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 615 471 292 79 53 chr9 3977182 3977276 -120098896 + RLTR20C LTR ERVK 492 578 0 4 615 259 289 25 38 chr9 3977298 3977377 -120098795 - B3A SINE B2 -64 134 55 4 615 2115 139 99 20 chr9 3977534 3977937 -120098235 - RLTR11B LTR ERVK -18 435 1 4 615 248 143 30 45 chr9 3977949 3978015 -120098157 + (TTTG)n Simple_repeat Simple_repeat 3 67 0 4 615 412 370 95 29 chr9 3978255 3978497 -120097675 - B4A SINE B4 -6 286 29 4 615 241 330 0 83 chr9 3978588 3978684 -120097488 - B2_Mm2 SINE B2 -69 126 39 4 615 3898 243 16 6 chr9 3978706 3979537 -120096635 - Lx5 LINE L1 0 7050 6212 4 615 7591 76 8 2 chr9 3979537 3980752 -120095420 + L1_Mus2 LINE L1 5345 6565 -1 4 615 1438 220 78 14 chr9 3980753 3981099 -120095073 - Lx5 LINE L1 -822 6228 5861 4 615 877 288 8 36 chr9 3981133 3981382 -120094790 + MTE2a LTR MaLR 137 378 -1 4 615 669 348 30 4 chr9 3981423 3981654 -120094518 - B4 SINE B4 -4 288 52 4 615 565 298 157 120 chr9 3981714 3982065 -120094107 - MTE2a LTR MaLR -15 364 1 4 615 360 152 0 0 chr9 3983257 3983323 -120092849 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 615 547 214 0 0 chr9 3983392 3983490 -120092682 + B1_Mur1 SINE Alu 40 137 -12 4 615 258 151 65 0 chr9 3983502 3983595 -120092577 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 4 615 624 0 0 59 chr9 3983591 3983693 -120092479 + (TTCTC)n Simple_repeat Simple_repeat 5 100 0 4 615 216 0 0 0 chr9 3983697 3983721 -120092451 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 615 1066 86 14 7 chr9 3983911 3984052 -120092120 + B1_Mm SINE Alu 3 144 -3 4 615 1188 75 0 0 chr9 3984055 3984215 -120091957 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 4 615 559 316 72 50 chr9 3984623 3985023 -120091149 - L1_Rod LINE L1 -43 5804 5396 4 615 2072 187 65 80 chr9 3985024 3985154 -120091018 - L1_Mm LINE L1 -786 5097 4996 4 615 1175 70 6 31 chr9 3985154 3985315 -120090857 - L1_Mus1 LINE L1 -1 6566 6410 4 615 2072 187 65 80 chr9 3985315 3985719 -120090453 - L1_Mm LINE L1 -888 4995 4571 4 615 978 83 36 0 chr9 3985721 3985889 -120090283 + (TTC)n Simple_repeat Simple_repeat 1 174 0 4 615 14428 106 16 21 chr9 3985889 3987712 -120088460 - L1VL4 LINE L1 -439 3120 1302 4 615 6241 93 46 29 chr9 3987712 3987877 -120088295 - RLTR13D6 LTR ERVK 0 902 722 4 615 537 30 0 0 chr9 3987877 3987944 -120088228 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 4 615 6241 93 46 29 chr9 3987944 3988665 -120087507 - RLTR13D6 LTR ERVK -181 721 2 4 615 14428 138 21 10 chr9 3988665 3989936 -120086236 - L1VL4 LINE L1 -2258 1301 19 4 615 2003 260 18 22 chr9 3990394 3990897 -120085275 - Lx6 LINE L1 -1 7459 6959 4 615 2955 147 78 16 chr9 3990973 3991470 -120084702 - RLTR11A LTR ERVK 0 528 1 4 615 4137 199 45 32 chr9 3991477 3992530 -120083642 - Lx5 LINE L1 -1090 5960 4880 4 615 6092 208 35 21 chr9 3992549 3994421 -120081751 - Lx5 LINE L1 -3 7047 5126 4 615 1386 144 70 4 chr9 3994450 3994694 -120081478 + Lx2B LINE L1 5653 5912 -1088 4 615 7068 176 29 43 chr9 3994716 3995278 -120080894 - L1_Mur1 LINE L1 -538 5339 4806 4 615 3513 136 25 27 chr9 3995278 3995836 -120080336 + RLTR31B_Mm LTR ERVK 1 557 0 4 615 7068 176 29 43 chr9 3995836 3996509 -120079663 - L1_Mur1 LINE L1 -1072 4805 4126 4 615 2266 165 162 40 chr9 3996509 3996983 -120079189 - RMER16 LTR ERVK 0 533 2 4 615 7068 176 29 43 chr9 3996983 3997251 -120078921 - L1_Mur1 LINE L1 -1752 4125 3857 4 615 1276 124 88 5 chr9 3997258 3997511 -120078661 - L1_Mur1 LINE L1 -4429 1457 1183 4 615 675 67 0 0 chr9 3997511 3997600 -120078572 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 4 615 404 70 337 0 chr9 3997601 3997687 -120078485 - B2_Mm2 SINE B2 -34 161 47 4 615 324 0 0 0 chr9 3997703 3997739 -120078433 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 4 615 1159 101 0 0 chr9 3997740 3997898 -120078274 - B2_Mm2 SINE B2 -37 158 1 4 615 1671 213 17 34 chr9 3997898 3998478 -120077694 - L1_Mur1 LINE L1 -5473 1184 617 4 615 342 45 0 0 chr9 3998549 3998593 -120077579 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 4 615 2064 240 31 8 chr9 3998593 3999076 -120077096 - Lx3C LINE L1 -14 6962 6469 4 615 3104 60 2 5 chr9 4000078 4000479 -120075693 - MTB LTR MaLR 0 400 1 1 615 1971 160 10 35 chr9 4001282 4001398 -120074774 + RMER3D-int LTR ERVK 1014 1107 -1735 2 615 2910 99 12 2 chr9 4001398 4001813 -120074359 - BGLII LTR ERVK -2 419 1 3 615 1971 154 5 42 chr9 4001813 4002100 -120074072 + RMER3D-int LTR ERVK 1108 1384 -1458 2 615 1061 88 2 8 chr9 4002163 4002323 -120073849 + L1Md_T LINE L1 5457 5615 -685 4 615 8472 30 1 0 chr9 4002323 4003318 -120072854 + L1Md_T LINE L1 5587 6582 0 4 615 3805 229 80 64 chr9 4003337 4004663 -120071509 + RMER3D-int LTR ERVK 352 2650 -192 5 615 2828 55 0 0 chr9 4004663 4005009 -120071163 - ORR1A1 LTR MaLR 0 346 1 6 615 3805 228 80 63 chr9 4005009 4005210 -120070962 + RMER3D-int LTR ERVK 2651 2841 -1 5 615 1906 211 37 68 chr9 4005211 4005782 -120070390 + RLTR31_Mur LTR ERVK 1 553 0 5 615 1132 76 7 0 chr9 4006380 4006524 -120069648 + B1_Mus1 SINE Alu 2 146 -2 7 615 21 0 0 0 chr9 4006713 4006734 -120069438 + AT_rich Low_complexity Low_complexity 1 21 0 8 615 235 85 0 41 chr9 4006901 4006950 -120069222 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 615 297 0 0 0 chr9 4006950 4006982 -120069190 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 615 387 320 58 39 chr9 4008746 4009006 -120067166 + L1_Rod LINE L1 63 327 -6845 1 615 1198 261 92 27 chr9 4008992 4009232 -120066940 + L1_Rod LINE L1 74 316 -6856 1 615 7090 92 48 3 chr9 4009232 4010221 -120065951 + RLTR13D4 LTR ERVK 1 1033 0 1 615 1198 261 92 27 chr9 4010221 4010382 -120065790 + L1_Rod LINE L1 317 501 -6671 1 615 422 330 118 30 chr9 4010659 4010759 -120065413 + L1MC3 LINE L1 6711 6810 -975 1 615 360 64 0 0 chr9 4010759 4010806 -120065366 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 615 422 330 118 30 chr9 4010806 4011077 -120065095 + L1MC3 LINE L1 6811 7115 -670 1 615 621 0 0 0 chr9 4011080 4011149 -120065023 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 1 615 7711 139 19 5 chr9 4011161 4012405 -120063767 - Lx3C LINE L1 -7 6969 5708 1 615 5173 144 25 24 chr9 4012403 4012491 -120063681 - Lx3C LINE L1 -343 5543 5462 1 615 7185 47 18 2 chr9 4012491 4013370 -120062802 + RLTR13B1 LTR ERVK 1 893 0 1 615 5173 144 25 24 chr9 4013370 4014237 -120061935 - Lx3C LINE L1 -425 5461 4587 1 615 1071 274 30 96 chr9 4014259 4014623 -120061549 + ORR1E LTR MaLR 8 347 -12 1 615 470 292 54 41 chr9 4014654 4014875 -120061297 + L1MC3 LINE L1 7178 7401 -384 1 615 3215 150 18 0 chr9 4015344 4015857 -120060315 + L1VL2 LINE L1 314 835 -5500 1 615 11440 159 19 14 chr9 4015857 4018760 -120057412 + Lx LINE L1 3730 6649 -5 2 615 34 24 0 0 chr9 4019239 4019280 -120056892 + AT_rich Low_complexity Low_complexity 1 41 0 2 615 252 360 22 22 chr9 4019408 4019547 -120056625 + Lx8 LINE L1 7107 7245 -228 2 615 184 59 29 29 chr9 4019625 4019660 -120056512 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 615 23 54 0 0 chr9 4019867 4019904 -120056268 + AT_rich Low_complexity Low_complexity 1 37 0 2 615 222 152 22 0 chr9 4019921 4019967 -120056205 + A-rich Low_complexity Low_complexity 2 48 0 2 615 2385 140 91 0 chr9 4020150 4020535 -120055637 + RLTR9B2 LTR ERVK 1 420 0 2 615 302 292 69 60 chr9 4020537 4020854 -120055318 + ETnERV2-int LTR ERVK 4 323 -2991 2 615 518 252 43 87 chr9 4020868 4020887 -120055285 + B4 SINE B4 70 88 -204 2 615 363 44 0 0 chr9 4020887 4020932 -120055240 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 615 518 252 43 87 chr9 4020932 4021073 -120055099 + B4 SINE B4 89 223 -69 2 615 1052 52 7 0 chr9 4020939 4021075 -120055097 + B1_Mm SINE Alu 11 147 0 2 615 3163 72 11 35 chr9 4021076 4021537 -120054635 + L1Md_F2 LINE L1 6116 6565 -17 3 615 4466 152 49 79 chr9 4021670 4022070 -120054102 + ETnERV2-int LTR ERVK 1057 1424 -5982 2 615 396 0 0 0 chr9 4022070 4022114 -120054058 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 3 615 4466 152 49 79 chr9 4022114 4022741 -120053431 + ETnERV2-int LTR ERVK 1425 2053 -5353 2 615 423 0 0 0 chr9 4022741 4022788 -120053384 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 615 4466 152 49 79 chr9 4022788 4022833 -120053339 + ETnERV2-int LTR ERVK 2054 2097 -5309 2 615 335 111 19 0 chr9 4022828 4022882 -120053290 + ETnERV2-int LTR ERVK 2032 2086 -5320 2 615 6718 136 41 7 chr9 4022906 4024080 -120052092 + ETnERV2-int LTR ERVK 2496 3709 -3697 2 615 8191 36 0 1 chr9 4024081 4025159 -120051013 - L1Md_T LINE L1 0 6582 5507 3 615 7035 149 12 2 chr9 4025159 4026248 -120049924 + ETnERV2-int LTR ERVK 3722 4821 -2585 2 615 2470 217 35 82 chr9 4026239 4027529 -120048643 + MMETn-int LTR ERVK 2356 3749 -1095 3 615 410 125 27 14 chr9 4027744 4027817 -120048355 + MMETn-int LTR ERVK 7331 7404 -2 3 615 2697 96 20 12 chr9 4027818 4028218 -120047954 + RLTR9D LTR ERVK 1 403 0 3 615 278 174 0 0 chr9 4028218 4028264 -120047908 + RMER16-int LTR ERVK 2187 2232 -5174 3 615 9021 165 58 76 chr9 4028259 4031039 -120045133 + RMER16-int LTR ERVK 1699 4176 -1230 3 615 407 270 39 23 chr9 4031045 4031174 -120044998 + RMER16-int LTR ERVK 6097 6227 -1179 3 615 2123 184 10 3 chr9 4031360 4031747 -120044425 - ORR1B1 LTR MaLR 0 394 5 3 615 29703 121 15 6 chr9 4032523 4038818 -120037354 + L1_Mus1 LINE L1 177 6534 -33 3 615 189 0 0 0 chr9 4038818 4038839 -120037333 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 615 29 0 0 0 chr9 4038839 4038868 -120037304 + AT_rich Low_complexity Low_complexity 1 29 0 3 615 256 53 0 0 chr9 4039418 4039462 -120036710 - L1_Mus2 LINE L1 0 6566 6528 4 615 243 91 0 0 chr9 4039464 4039508 -120036664 + L1_Mus2 LINE L1 6523 6566 0 4 615 24 53 0 0 chr9 4039518 4039556 -120036616 + AT_rich Low_complexity Low_complexity 1 38 0 4 615 305 214 71 12 chr9 4039719 4039804 -120036368 - L1M5 LINE L1 -327 5797 5708 4 615 486 0 0 0 chr9 4040015 4040069 -120036103 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 615 5698 76 10 8 chr9 4040069 4040850 -120035322 + L1_Mus2 LINE L1 5779 6561 -5 4 615 281 369 44 6 chr9 4041541 4041721 -120034451 - MER3 DNA MER1_type -11 198 12 4 615 1569 158 126 35 chr9 4041727 4042100 -120034072 - RLTR9E LTR ERVK -2 407 1 4 615 258 252 23 0 chr9 4042462 4042593 -120033579 + CT-rich Low_complexity Low_complexity 2 135 0 4 615 2181 64 0 3 chr9 4044477 4044760 -120031412 - L1_Mus2 LINE L1 -1 6565 6284 4 615 621 230 29 7 chr9 4045377 4045513 -120030659 - RMER10A LTR ERVL -303 139 1 4 615 5251 163 37 12 chr9 4045778 4046708 -120029464 - RMER17B LTR ERVK -5 953 1 5 615 549 68 0 0 chr9 4047019 4047093 -120029079 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 615 3672 151 72 30 chr9 4047524 4048512 -120027660 + RLTR13D1 LTR ERVK 16 1023 0 5 615 270 208 97 91 chr9 4048545 4048720 -120027452 - MYSERV-int LTR ERVK -2571 3566 3391 5 615 252 197 89 38 chr9 4048778 4048857 -120027315 - MYSERV-int LTR ERVK -2864 3273 3191 5 615 456 237 26 9 chr9 4049058 4049173 -120026999 - MYSERV6-int LTR ERVK -276 8683 8567 5 615 28161 126 30 15 chr9 4049173 4054894 -120021278 - L1_Mus2 LINE L1 -364 6202 393 5 615 2130 240 77 71 chr9 4054897 4056133 -120020039 - L1Md_F LINE L1 -5433 1108 123 5 615 2617 101 3 3 chr9 4056128 4056515 -120019657 - L1_Mm LINE L1 -426 5457 5071 5 615 496 244 103 6 chr9 4056531 4056757 -120019415 - MYSERV-int LTR ERVK -766 5784 5623 5 615 7084 122 74 31 chr9 4056770 4058752 -120017420 - Lx3A LINE L1 -2 6979 4906 5 615 222 204 0 75 chr9 4059038 4059091 -120017081 + B1_Mur4 SINE Alu 94 142 -8 5 615 279 0 0 0 chr9 4059092 4059123 -120017049 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 6 615 245 175 32 0 chr9 4060248 4060311 -120015861 + A-rich Low_complexity Low_complexity 3 67 0 6 615 950 74 15 0 chr9 4060328 4060463 -120015709 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 6 615 187 355 12 25 chr9 4060955 4061036 -120015136 - MIRc SINE MIR -119 149 70 6 76 24 0 0 0 chr9 4063216 4063240 -120012932 + AT_rich Low_complexity Low_complexity 1 24 0 6 616 248 345 18 18 chr9 4063323 4063435 -120012737 - B4A SINE B4 -4 288 177 6 616 22 35 0 0 chr9 4063723 4063752 -120012420 + AT_rich Low_complexity Low_complexity 1 29 0 6 616 203 188 0 20 chr9 4065262 4065311 -120010861 + T-rich Low_complexity Low_complexity 4 51 0 6 616 229 291 114 38 chr9 4065930 4066062 -120010110 - MLT1A0 LTR MaLR -203 162 21 6 616 387 0 0 0 chr9 4066078 4066121 -120010051 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 616 300 187 37 74 chr9 4066171 4066252 -120009920 - ORR1D1 LTR MaLR -294 80 3 7 616 265 316 30 40 chr9 4067023 4067122 -120009050 + B4A SINE B4 6 103 -189 7 616 35 41 0 0 chr9 4067249 4067298 -120008874 + AT_rich Low_complexity Low_complexity 1 49 0 7 616 25528 84 3 9 chr9 4068471 4072898 -120003274 + L1Md_F2 LINE L1 587 4987 -896 7 616 2813 73 0 0 chr9 4072903 4073257 -120002915 - IAPEY2_LTR LTR ERVK -3 354 1 7 616 3113 79 56 0 chr9 4073257 4073990 -120002182 - IAPEY3-int LTR ERVK 0 7680 6907 7 616 439 68 0 0 chr9 4073990 4074049 -120002123 - IAPEY3-int LTR ERVK -2770 4910 4852 7 616 3272 87 25 0 chr9 4074016 4074490 -120001682 - IAPEY3-int LTR ERVK -4957 2723 2238 7 616 8824 131 13 21 chr9 4074468 4076100 -120000072 - IAPEY3-int LTR ERVK -5699 1981 17 7 616 2963 59 0 0 chr9 4076100 4076454 -119999718 - IAPEY2_LTR LTR ERVK -3 354 1 7 616 4416 68 2 0 chr9 4076454 4077058 -119999114 + L1Md_F2 LINE L1 4982 5586 -297 7 616 8076 45 3 9 chr9 4077058 4078060 -119998112 + L1Md_F2 LINE L1 5587 6582 0 7 616 506 93 0 0 chr9 4078060 4078135 -119998037 + L1_Mur2 LINE L1 4663 4737 -1140 7 616 4867 150 8 10 chr9 4078135 4079150 -119997022 + L1_Mus3 LINE L1 4917 5933 -705 7 616 1587 145 11 122 chr9 4079170 4079532 -119996640 + RLTRETN_Mm LTR ERVK 1 322 0 7 616 9594 178 73 92 chr9 4079533 4083735 -119992437 + MMETn-int LTR ERVK 2 4440 -404 7 616 343 263 169 42 chr9 4083736 4084030 -119992142 + RLTR13D6 LTR ERVK 93 440 -462 7 616 537 172 59 15 chr9 4084030 4084166 -119992006 + MMETn-int LTR ERVK 4698 4839 -5 7 616 1583 129 11 141 chr9 4084171 4084541 -119991631 + RLTRETN_Mm LTR ERVK 1 322 0 7 616 3822 114 26 3 chr9 4084541 4085106 -119991066 + L1_Mus4 LINE L1 6050 6629 -7 7 616 265 280 40 10 chr9 4085534 4085635 -119990537 - MTE2a LTR MaLR 0 359 256 8 616 274 319 100 14 chr9 4087845 4088125 -119988047 + L1MC LINE L1 4562 4865 -1281 8 616 327 239 0 14 chr9 4088317 4088389 -119987783 - B3A SINE B2 -126 72 2 8 616 316 322 92 43 chr9 4088389 4088567 -119987605 - MTE2a LTR MaLR -192 187 1 8 616 318 230 164 26 chr9 4088784 4088900 -119987272 + MLT2B4 LTR ERVL 100 231 -325 8 616 426 309 15 38 chr9 4088935 4089066 -119987106 - B1F1 SINE Alu -9 140 13 8 616 232 336 88 9 chr9 4089124 4089238 -119986934 + MLT2B4 LTR ERVL 371 493 -63 8 616 758 141 7 0 chr9 4089255 4089397 -119986775 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 8 616 1303 241 73 21 chr9 4089422 4089613 -119986559 + RMER17C LTR ERVK 1 192 -218 8 616 342 0 0 0 chr9 4089613 4089651 -119986521 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 616 1303 241 73 21 chr9 4089651 4089841 -119986331 + RMER17C LTR ERVK 193 401 -9 8 616 1876 209 54 44 chr9 4089850 4090370 -119985802 + RMER17C-int LTR ERVK 2 526 -2712 8 616 8023 29 0 0 chr9 4090415 4091477 -119984695 - L1Md_A LINE L1 0 6582 5521 8 616 6643 14 0 1 chr9 4091469 4092273 -119983899 + L1Md_A LINE L1 4693 5495 -388 8 616 1895 173 136 23 chr9 4093234 4093719 -119982453 + RMER17C-int LTR ERVK 1485 2024 -1214 8 616 965 164 25 5 chr9 4093739 4093941 -119982231 + RMER17C-int LTR ERVK 2159 2364 -874 8 616 1167 155 198 20 chr9 4093924 4094378 -119981794 + RMER17C-int LTR ERVK 2532 3066 -172 8 616 495 317 32 32 chr9 4094401 4094590 -119981582 - RMER5 LTR ERV1 -331 203 15 8 616 185 268 39 66 chr9 4094654 4094747 -119981425 - MIRb SINE MIR -92 176 87 9 616 278 297 98 9 chr9 4094850 4094962 -119981210 - MIR SINE MIR -33 229 108 9 616 195 224 0 0 chr9 4095749 4095825 -119980347 + GA-rich Low_complexity Low_complexity 2 77 0 9 616 492 32 0 0 chr9 4096275 4096337 -119979835 + (TC)n Simple_repeat Simple_repeat 2 63 0 9 616 279 0 0 0 chr9 4096337 4096367 -119979805 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 616 278 297 98 9 chr9 4097029 4097141 -119979031 - MIR SINE MIR -33 229 108 9 616 218 224 17 0 chr9 4097442 4097500 -119978672 + (TATG)n Simple_repeat Simple_repeat 1 59 0 9 616 406 320 126 23 chr9 4097505 4097767 -119978405 - B4A SINE B4 -1 291 3 9 616 182 310 102 45 chr9 4098007 4098095 -119978077 - L2 LINE L2 -3294 125 33 9 616 537 184 0 0 chr9 4098264 4098373 -119977799 + (CA)n Simple_repeat Simple_repeat 2 110 0 9 616 2471 94 22 3 chr9 4099831 4100193 -119975979 - L1_Mus4 LINE L1 0 6636 6268 1 616 1944 200 60 5 chr9 4101501 4101919 -119974253 - RMER10A LTR ERVL -1 441 1 1 616 1409 269 34 8 chr9 4101921 4102273 -119973899 - ORR1D2 LTR MaLR -9 361 1 1 616 466 103 0 14 chr9 4102414 4102483 -119973689 - RMER10B LTR ERVL -330 68 1 1 616 254 188 0 55 chr9 4102706 4102779 -119973393 + MER53 DNA hAT 89 157 -36 1 616 232 275 147 0 chr9 4102845 4102954 -119973218 - MER34A1 LTR ERV1 -2 585 461 1 616 550 326 100 85 chr9 4103019 4103164 -119973008 + MLT1A1 LTR MaLR 2 143 -265 1 616 528 45 0 0 chr9 4103164 4103231 -119972941 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 616 550 326 100 85 chr9 4103231 4103474 -119972698 + MLT1A1 LTR MaLR 144 396 -12 1 616 216 200 103 52 chr9 4103646 4103704 -119972468 + PB1D10 SINE Alu 30 90 -27 1 616 2429 146 25 5 chr9 4104446 4104838 -119971334 - RLTR9D LTR ERVK -3 400 1 1 616 330 164 13 27 chr9 4104839 4104914 -119971258 - ETnERV-int LTR ERVK -2 7404 7331 1 616 4908 143 2 26 chr9 4105128 4106131 -119970041 - ETnERV-int LTR ERVK -1179 6227 5491 1 616 5753 257 27 20 chr9 4106128 4110324 -119965848 - ETnERV-int LTR ERVK -2465 4941 3 1 616 2422 148 20 13 chr9 4110332 4110729 -119965443 - RLTR9D LTR ERVK -3 400 1 1 616 250 148 0 103 chr9 4110999 4111067 -119965105 + MER53 DNA hAT 98 158 -35 1 616 2968 211 33 91 chr9 4112575 4113331 -119962841 - RMER6D LTR ERVK -8 712 1 1 616 24 32 0 0 chr9 4114075 4114106 -119962066 + AT_rich Low_complexity Low_complexity 1 31 0 1 616 311 169 14 0 chr9 4114175 4114246 -119961926 + T-rich Low_complexity Low_complexity 3 74 0 1 616 1176 61 7 0 chr9 4114285 4114432 -119961740 - B1_Mus1 SINE Alu 0 148 1 1 616 196 213 62 21 chr9 4114563 4114611 -119961561 - L2 LINE L2 -2032 1387 1338 1 616 243 303 51 92 chr9 4114690 4114788 -119961384 + MTEa LTR MaLR 5 98 -281 1 616 744 281 29 5 chr9 4115207 4115411 -119960761 + B3 SINE B2 3 211 -5 1 616 21 0 0 0 chr9 4115571 4115592 -119960580 + AT_rich Low_complexity Low_complexity 1 21 0 1 616 447 207 13 52 chr9 4115826 4115979 -119960193 + Lx9 LINE L1 7429 7575 -69 1 616 1440 55 4 4 chr9 4116438 4116696 -119959476 + (TAGA)n Simple_repeat Simple_repeat 1 258 0 1 616 315 71 0 0 chr9 4117026 4117068 -119959104 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 1 616 426 20 0 0 chr9 4117287 4117338 -119958834 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 616 365 205 157 0 chr9 4117377 4117460 -119958712 - Lx5 LINE L1 -140 6910 6815 1 616 1516 139 4 8 chr9 4117486 4117733 -119958439 + RLTR22_Mur LTR ERVK 1591 1836 -12 1 616 1815 229 94 39 chr9 4118110 4118697 -119957475 + Lx7 LINE L1 7073 7691 -5 1 616 2100 239 75 66 chr9 4118755 4119408 -119956764 + Lx9 LINE L1 6985 7643 -1 1 616 558 206 72 58 chr9 4119794 4119807 -119956365 - B1_Mus1 SINE Alu -2 146 135 1 616 194 0 0 37 chr9 4119807 4119834 -119956338 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 616 558 206 72 58 chr9 4119834 4119959 -119956213 - B1_Mus1 SINE Alu -14 134 6 1 616 2145 104 16 0 chr9 4120192 4120500 -119955672 - L1_Mus4 LINE L1 -515 6121 5810 1 616 3129 117 11 4 chr9 4120500 4120974 -119955198 + L1_Mus4 LINE L1 6158 6634 -2 1 616 189 94 0 0 chr9 4121256 4121288 -119954884 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 616 486 0 0 0 chr9 4121290 4121344 -119954828 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 616 29 28 0 0 chr9 4121529 4121565 -119954607 + AT_rich Low_complexity Low_complexity 1 36 0 1 616 27 29 0 0 chr9 4121992 4122026 -119954146 + AT_rich Low_complexity Low_complexity 1 34 0 1 616 256 320 49 80 chr9 4122501 4122576 -119953596 + MLT1C LTR MaLR 13 80 -387 1 616 2316 32 7 14 chr9 4122576 4122864 -119953308 + L1Md_F3 LINE L1 6299 6584 0 1 616 256 320 49 80 chr9 4122864 4122951 -119953221 + MLT1C LTR MaLR 81 170 -297 1 616 432 118 0 0 chr9 4122953 4123021 -119953151 + (TTG)n Simple_repeat Simple_repeat 2 69 0 1 616 672 227 0 8 chr9 4123032 4123165 -119953007 - B1_Mur4 SINE Alu -14 136 5 1 616 294 345 156 64 chr9 4123166 4123448 -119952724 + MLT1C LTR MaLR 154 461 -6 1 616 1193 55 7 0 chr9 4123620 4123766 -119952406 + B1_Mus1 SINE Alu 2 148 0 1 616 190 315 95 14 chr9 4124119 4124193 -119951979 - MIR SINE MIR -101 161 82 1 616 1863 161 58 75 chr9 4125619 4126235 -119949937 + L1_Mur2 LINE L1 3422 3942 -1938 1 616 180 0 0 0 chr9 4128439 4128459 -119947713 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 616 581 231 19 25 chr9 4128481 4128641 -119947531 + Lx7 LINE L1 7534 7692 -4 1 616 301 281 46 7 chr9 4128652 4128787 -119947385 + L1_Rod LINE L1 5704 5915 -274 1 616 342 0 0 0 chr9 4128880 4128918 -119947254 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1 616 557 244 47 16 chr9 4129245 4129374 -119946798 + ETnERV2-int LTR ERVK 7070 7202 -204 1 616 235 200 39 39 chr9 4130389 4130441 -119945731 + RSINE1 SINE B4 79 130 -35 1 616 21 0 0 0 chr9 4130786 4130807 -119945365 + AT_rich Low_complexity Low_complexity 1 21 0 1 616 1128 78 0 0 chr9 4130882 4131024 -119945148 + B1_Mus1 SINE Alu 1 142 -6 1 616 737 81 8 24 chr9 4131057 4131183 -119944989 + (GGAGA)n Simple_repeat Simple_repeat 2 125 0 1 616 753 190 0 40 chr9 4131173 4131420 -119944752 + GA-rich Low_complexity Low_complexity 1 236 0 1 616 426 69 0 0 chr9 4131420 4131478 -119944694 + (GAAAA)n Simple_repeat Simple_repeat 1 58 0 1 616 186 71 0 0 chr9 4132036 4132064 -119944108 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1 616 702 145 0 0 chr9 4132388 4132540 -119943632 + (GGGAGA)n Simple_repeat Simple_repeat 5 156 0 1 616 4266 44 15 0 chr9 4132665 4133184 -119942988 + L1Md_F2 LINE L1 6055 6581 -1 1 616 245 172 16 0 chr9 4133640 4133704 -119942468 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 616 300 111 0 0 chr9 4133736 4133781 -119942391 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 616 868 70 16 0 chr9 4134712 4134841 -119941331 + (TC)n Simple_repeat Simple_repeat 2 132 0 1 616 10957 104 12 1 chr9 4136142 4138459 -119937713 - L1_Mus2 LINE L1 -1 6565 4224 1 616 2970 0 0 0 chr9 4138460 4138786 -119937386 + IAPLTR3 LTR ERVK 1 326 0 1 616 34244 25 5 7 chr9 4138786 4142737 -119933435 + IAPLTR3-int LTR ERVK 1 3940 -2881 1 616 4748 26 2 0 chr9 4142727 4143273 -119932899 + IAPLTR3-int LTR ERVK 6255 6801 -20 1 616 2924 12 0 0 chr9 4143273 4143599 -119932573 + IAPLTR3 LTR ERVK 1 326 0 1 616 19045 147 25 37 chr9 4143599 4147574 -119928598 - L1_Mus2 LINE L1 -1655 4228 262 1 616 269 281 64 34 chr9 4147714 4147879 -119928293 + RLTR13D3 LTR ERVK 983 1066 -48 1 616 221 260 178 0 chr9 4148724 4148797 -119927375 + PB1D10 SINE Alu 31 116 -1 1 616 412 177 13 0 chr9 4148890 4148969 -119927203 + B3A SINE B2 2 81 -117 1 616 226 325 12 24 chr9 4149082 4149167 -119927005 + RSINE1 SINE B4 11 94 -71 1 616 236 354 0 12 chr9 4149181 4149264 -119926908 + B4A SINE B4 203 284 -8 1 616 591 74 0 0 chr9 4149268 4149349 -119926823 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 616 1011 71 0 0 chr9 4149573 4149714 -119926458 + (TC)n Simple_repeat Simple_repeat 2 142 0 1 616 481 342 74 69 chr9 4149831 4150208 -119925964 + MTE2a LTR MaLR 1 379 0 1 616 36384 79 11 18 chr9 4150278 4156690 -119919482 - L1Md_F2 LINE L1 -12 6570 208 1 616 579 321 69 35 chr9 4157565 4157797 -119918375 - MLT1A0 LTR MaLR -4 361 122 1 616 261 57 0 0 chr9 4157868 4157903 -119918269 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1 616 552 284 85 22 chr9 4158841 4159144 -119917028 + MLT1A0 LTR MaLR 1 363 -2 1 616 567 43 0 0 chr9 4160638 4160708 -119915464 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1 616 324 0 0 0 chr9 4160797 4160833 -119915339 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 616 443 338 25 100 chr9 4160857 4161097 -119915075 + ID_B1 SINE B4 3 224 0 1 616 4290 151 48 32 chr9 4161477 4162292 -119913880 + Lx3C LINE L1 6147 6974 -2 1 616 1718 145 144 23 chr9 4162921 4163274 -119912898 - RLTR11A LTR ERVK -132 396 1 1 616 852 275 14 19 chr9 4163343 4163554 -119912618 - B3 SINE B2 -1 215 6 1 616 424 304 35 9 chr9 4163665 4163778 -119912394 + MTEa LTR MaLR 189 304 -75 1 616 333 0 0 0 chr9 4164528 4164565 -119911607 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 616 1003 295 71 88 chr9 4164785 4165138 -119911034 - MTE2a LTR MaLR -14 365 19 1 616 594 93 0 0 chr9 4165420 4165506 -119910666 + (TTG)n Simple_repeat Simple_repeat 2 87 0 1 616 26250 113 50 4 chr9 4166396 4169710 -119906462 - L1Md_F2 LINE L1 -4 6578 3000 1 616 2118 133 16 179 chr9 4169710 4170214 -119905958 - BGLII_Mus LTR ERVK 0 422 1 1 616 26250 142 89 8 chr9 4170214 4172572 -119903600 - L1Md_F2 LINE L1 -2887 2999 209 1 616 240 277 58 51 chr9 4172662 4172799 -119903373 - L1MEe LINE L1 -3973 881 744 1 616 2776 36 0 0 chr9 4174446 4174783 -119901389 + IAPLTR4 LTR ERVK 1 337 -8 1 616 487 317 40 71 chr9 4174787 4175101 -119901071 - MER67D LTR ERV1 -210 451 151 1 616 4641 167 47 30 chr9 4175103 4176258 -119899914 + Lx LINE L1 5479 6652 -2 1 616 267 31 0 0 chr9 4176486 4176518 -119899654 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1 616 3625 5 0 0 chr9 4177165 4177546 -119898626 + L1Md_T LINE L1 6202 6582 0 1 616 243 0 0 0 chr9 4177916 4177943 -119898229 + (A)n Simple_repeat Simple_repeat 1 27 0 1 616 213 65 0 0 chr9 4177981 4178012 -119898160 + (A)n Simple_repeat Simple_repeat 1 31 0 1 616 350 267 243 28 chr9 4178449 4178626 -119897546 + B3 SINE B2 2 216 0 1 616 785 308 46 28 chr9 4178897 4179181 -119896991 - RMER15 LTR ERVL -11 564 276 1 616 192 316 123 0 chr9 4179371 4179485 -119896687 + L2a LINE L2 3298 3425 -1 1 616 507 78 0 0 chr9 4179847 4179924 -119896248 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 616 290 276 89 65 chr9 4181918 4182042 -119894130 - PB1 SINE Alu 0 127 1 1 616 36209 36 0 0 chr9 4182506 4188013 -119888159 + L1Md_T LINE L1 1 5589 -297 1 616 9549 7 0 0 chr9 4188013 4189065 -119887107 + L1Md_T LINE L1 5590 6585 0 1 616 5255 84 56 5 chr9 4189312 4190097 -119886075 + RLTR22_Mus LTR ERVK 1 825 -983 1 616 264 312 111 43 chr9 4190338 4190546 -119885626 + RMER12 LTR ERVK 1101 1322 0 1 616 2913 100 60 5 chr9 4190652 4191083 -119885089 + Lx2 LINE L1 6281 6735 -262 1 616 375 41 0 0 chr9 4191116 4191165 -119885007 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 616 260 252 25 25 chr9 4191220 4191342 -119884830 + (CAGTT)n Simple_repeat Simple_repeat 1 122 0 2 616 838 236 39 56 chr9 4191349 4191721 -119884451 + RMER6A LTR ERVK 414 720 0 2 616 336 222 34 34 chr9 4192205 4192330 -119883842 + L1VL2 LINE L1 300 492 -5843 2 616 6801 58 79 7 chr9 4192539 4193372 -119882800 + RLTR13B1 LTR ERVK 1 893 0 2 616 184 71 71 0 chr9 4193580 4193622 -119882550 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 2 616 282 341 24 25 chr9 4193641 4193861 -119882311 - RLTR6-int LTR ERV1 -3960 3818 3493 2 9 1960 149 92 28 chr9 4194028 4194428 -119881744 + RMER17D2 LTR ERVK 384 809 0 2 617 692 300 18 18 chr9 4194722 4194885 -119881287 + RSINE1 SINE B4 3 165 0 2 617 212 226 32 16 chr9 4194889 4194952 -119881220 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 2 617 24 53 0 0 chr9 4194954 4194992 -119881180 + AT_rich Low_complexity Low_complexity 1 38 0 2 617 845 209 0 0 chr9 4195287 4195426 -119880746 + B1_Mus1 SINE Alu 1 139 -9 2 617 324 83 0 0 chr9 4195651 4195699 -119880473 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 617 351 0 0 0 chr9 4195699 4195738 -119880434 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 617 9796 107 8 5 chr9 4195996 4198173 -119877999 - L1_Mus1 LINE L1 -7 6560 4380 2 617 320 122 0 0 chr9 4198167 4198216 -119877956 - L1_Mm LINE L1 -547 5336 5288 2 617 7705 63 7 1 chr9 4198210 4199180 -119876992 - L1Md_F2 LINE L1 0 6582 5607 2 617 13924 61 3 0 chr9 4199158 4200901 -119875271 + L1Md_F2 LINE L1 3867 5614 -269 2 617 15492 149 15 4 chr9 4200893 4202465 -119873707 - L1_Mm LINE L1 -578 5305 3723 2 617 240 35 0 0 chr9 4202465 4202494 -119873678 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 617 1131 93 0 0 chr9 4202496 4202635 -119873537 - B1_Mus2 SINE Alu -8 139 1 2 617 15492 149 15 4 chr9 4202635 4203694 -119872478 - L1_Mm LINE L1 -2161 3722 2643 2 617 343 257 0 0 chr9 4203692 4203766 -119872406 - L1VL1 LINE L1 -6348 74 1 2 617 318 174 14 28 chr9 4204068 4204139 -119872033 + RMER15 LTR ERVL 29 98 -477 2 617 3690 97 23 23 chr9 4204146 4204665 -119871507 - MURVY-LTR LTR ERV1 0 519 1 2 617 1794 304 22 58 chr9 4204665 4205797 -119870375 - MuRRS4-int LTR ERV1 -42 5021 4380 2 617 508 317 46 46 chr9 4206079 4206469 -119869703 - MURVY-int LTR ERV1 -1226 6226 5837 2 617 9588 296 52 34 chr9 4206469 4210000 -119866172 - RLTR6-int LTR ERV1 -3223 4555 945 2 617 433 36 11 57 chr9 4210000 4210088 -119866084 + (TTTG)n Simple_repeat Simple_repeat 1 84 0 2 617 9588 258 61 68 chr9 4210088 4210840 -119865332 - RLTR6-int LTR ERV1 -6834 944 3 2 617 3906 97 2 32 chr9 4210840 4211375 -119864797 - MURVY-LTR LTR ERV1 0 519 1 2 617 221 200 55 0 chr9 4211442 4211497 -119864675 - B1_Mur3 SINE Alu -51 98 41 2 617 256 170 19 19 chr9 4211449 4211503 -119864669 - 4.5SRNA scRNA scRNA -8 86 33 2 617 1330 254 67 62 chr9 4211503 4211877 -119864295 + RMER15 LTR ERVL 155 530 -45 2 617 841 188 214 5 chr9 4212056 4212243 -119863929 + URR1A DNA MER1_type 1 226 0 2 617 314 23 23 0 chr9 4212320 4212363 -119863809 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 617 3655 157 32 56 chr9 4214263 4215328 -119860844 + RLTR13D1 LTR ERVK 1 1004 -19 2 617 3879 175 56 5 chr9 4216368 4216459 -119859713 + Lx LINE L1 5943 6034 -620 2 617 1170 86 0 0 chr9 4216459 4216598 -119859574 + B1_Mm SINE Alu 1 139 -8 2 617 427 45 30 0 chr9 4216598 4216664 -119859508 + (CAA)n Simple_repeat Simple_repeat 2 69 0 2 617 3879 175 56 5 chr9 4216664 4217237 -119858935 + Lx LINE L1 6035 6641 -13 2 617 4649 133 66 46 chr9 4217756 4218604 -119857568 + RMER17A2 LTR ERVK 1 865 -41 2 617 21741 103 4 13 chr9 4218609 4222425 -119853747 - L1Md_A LINE L1 -1665 4218 440 2 617 6464 74 4 5 chr9 4222425 4223228 -119852944 + L1Md_F2 LINE L1 5769 6570 -12 2 617 5567 161 14 27 chr9 4223230 4224282 -119851890 + L1_Mur2 LINE L1 3682 4720 -1157 2 617 23 33 0 0 chr9 4225217 4225247 -119850925 + AT_rich Low_complexity Low_complexity 1 30 0 2 617 1705 250 56 0 chr9 4225737 4226097 -119850075 - Lx6 LINE L1 -169 7291 6912 2 617 1719 170 68 87 chr9 4226361 4226741 -119849431 + ORR1D1 LTR MaLR 1 373 -1 2 617 574 296 109 66 chr9 4226938 4227418 -119848754 + RMER20B LTR ERVK 1 509 -7 2 617 806 78 9 0 chr9 4228214 4228329 -119847843 + (TC)n Simple_repeat Simple_repeat 1 116 0 2 617 1175 99 6 28 chr9 4228345 4228521 -119847651 - B2_Mm2 SINE B2 -23 172 1 2 617 476 204 403 13 chr9 4230176 4230330 -119845842 - B3 SINE B2 -2 214 1 2 617 287 371 21 0 chr9 4230388 4230485 -119845687 - PB1D10 SINE Alu -14 103 5 2 617 658 267 0 0 chr9 4231289 4231424 -119844748 - B1_Mur1 SINE Alu -10 139 5 2 617 1037 252 5 0 chr9 4231442 4231656 -119844516 - B3 SINE B2 0 216 2 2 617 576 268 129 5 chr9 4233171 4233381 -119842791 - L1_Mur3 LINE L1 -453 5427 5192 2 617 487 302 84 29 chr9 4233378 4233680 -119842492 + Lx8 LINE L1 6332 6782 -862 2 617 430 304 107 115 chr9 4233779 4234284 -119841888 - RLTR12B LTR ERVK -4 524 24 2 617 33 73 0 0 chr9 4234435 4234503 -119841669 + AT_rich Low_complexity Low_complexity 1 68 0 2 617 1504 161 154 92 chr9 4234894 4235264 -119840908 + RLTR9C LTR ERVK 1 393 0 2 617 1086 226 112 31 chr9 4235265 4235621 -119840551 + ETnERV2-int LTR ERVK 2 386 -2928 2 617 1699 148 129 24 chr9 4235636 4236009 -119840163 + ETnERV2-int LTR ERVK 1071 1482 -5924 2 617 12178 55 5 0 chr9 4236019 4238246 -119837926 - L1Md_F2 LINE L1 0 6582 4347 2 617 3340 44 3 5 chr9 4238246 4238635 -119837537 + RLTR10 LTR ERVK 1 388 -2 2 617 7940 35 34 0 chr9 4238723 4239673 -119836499 + RLTR10-int LTR ERVK 11 992 -995 2 617 8183 24 2 0 chr9 4239953 4240875 -119835297 + RLTR10-int LTR ERVK 990 1913 -74 2 617 2363 105 162 0 chr9 4240875 4241227 -119834945 + IAPLTR2a LTR ERVK 1 409 -2 2 617 20336 55 42 20 chr9 4241227 4243842 -119832330 + IAPEz-int LTR ERVK 3 2674 -3807 2 617 8701 51 9 14 chr9 4243817 4244902 -119831270 + IAPEz-int LTR ERVK 5400 6479 -2 2 617 2363 105 162 0 chr9 4244904 4245256 -119830916 + IAPLTR2a LTR ERVK 1 409 -2 2 617 685 13 0 0 chr9 4245259 4245338 -119830834 + RLTR10-int LTR ERVK 1906 1984 -3 2 617 3340 44 3 5 chr9 4245340 4245729 -119830443 + RLTR10 LTR ERVK 1 388 -2 2 617 22438 95 6 6 chr9 4245729 4250800 -119825372 - L1Md_F2 LINE L1 -1529 4354 98 2 617 3814 144 17 2 chr9 4250803 4251560 -119824612 - L1Md_F LINE L1 -5832 687 1 2 617 661 201 21 0 chr9 4251568 4251712 -119824460 + ETnERV2-int LTR ERVK 1477 1623 -5783 2 617 11021 79 1 6 chr9 4251713 4253155 -119823017 + L1_Mm LINE L1 4348 5782 -101 2 617 16277 81 3 7 chr9 4253153 4256012 -119820160 - L1Md_F2 LINE L1 -13 6569 3724 2 617 399 260 23 68 chr9 4256032 4256164 -119820008 + B1_Mur3 SINE Alu 23 148 -1 2 617 814 174 0 11 chr9 4256272 4256446 -119819726 + GA-rich Low_complexity Low_complexity 3 174 0 2 617 1089 180 25 0 chr9 4256457 4256657 -119819515 - RLTR30 LTR ERV1 -20 359 155 2 617 369 234 0 72 chr9 4256659 4256742 -119819430 - RMER12 LTR ERVK -1 1321 1245 2 617 1298 184 4 28 chr9 4256909 4257161 -119819011 - RLTR22_Mur LTR ERVK -237 1611 1366 2 617 2226 121 13 0 chr9 4257163 4257478 -119818694 - ORR1A2 LTR MaLR -8 319 1 2 617 3296 199 102 20 chr9 4257491 4258381 -119817791 - RLTR22_Mus LTR ERVK -499 1309 347 2 617 876 181 44 0 chr9 4258381 4258541 -119817631 + RLTR20A2 LTR ERVK 1 167 -411 2 617 611 181 0 0 chr9 4258528 4258633 -119817539 + RLTR20A2 LTR ERVK 340 444 -90 2 617 1427 270 55 12 chr9 4258686 4259366 -119816806 + RMER1A Other Other 1 517 -549 2 617 1508 198 19 28 chr9 4259366 4259689 -119816483 + RLTR46 LTR ERVK 1 320 0 2 617 331 205 152 13 chr9 4260140 4260219 -119815953 + RLTR1B-int LTR ERV1 834 923 -2376 2 617 739 194 20 90 chr9 4260289 4260533 -119815639 + LSU-rRNA_Hsa rRNA rRNA 526 752 -4283 2 617 433 217 107 42 chr9 4260913 4261081 -119815091 + MMERVK10C-int LTR ERVK 431 609 -4797 2 617 333 140 18 0 chr9 4261177 4261234 -119814938 + MMERVK10C-int LTR ERVK 1089 1146 -4260 2 617 1392 207 19 32 chr9 4261236 4261545 -119814627 + MMERVK10C-int LTR ERVK 1885 2189 -5392 2 617 2041 89 170 19 chr9 4261546 4262081 -119814091 + MMERVK10C-int LTR ERVK 2314 2929 -4652 2 617 31788 113 12 16 chr9 4262081 4266625 -119809547 + MMERVK10C-int LTR ERVK 3058 7581 0 2 617 1415 211 19 28 chr9 4266625 4266947 -119809225 + RLTR46 LTR ERVK 1 319 -1 2 617 3104 216 12 10 chr9 4266958 4267616 -119808556 + RMER1A Other Other 272 825 -205 2 617 1105 314 140 64 chr9 4267616 4268415 -119807757 + RMER13A LTR ERVK 1 860 0 2 617 278 175 0 0 chr9 4268415 4268455 -119807717 + RMER1A Other Other 820 859 -171 2 617 459 0 0 0 chr9 4268455 4268506 -119807666 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 617 374 241 102 0 chr9 4268507 4268615 -119807557 + RMER1A Other Other 911 1029 -1 2 617 226 0 0 56 chr9 4269094 4269130 -119807042 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 617 262 321 134 6 chr9 4269178 4269335 -119806837 - L2 LINE L2 -934 2485 2309 2 617 191 318 151 50 chr9 4269435 4269733 -119806439 - L2 LINE L2 -1302 2117 1790 2 617 692 227 8 15 chr9 4269776 4269902 -119806270 + RSINE1 SINE B4 12 136 -29 2 617 1995 180 62 3 chr9 4269902 4270270 -119805902 + MTC LTR MaLR 1 390 -31 2 617 450 0 0 0 chr9 4270313 4270363 -119805809 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 617 240 59 0 0 chr9 4270363 4270397 -119805775 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 617 3997 32 5 0 chr9 4270665 4271099 -119805073 + RLTR10C LTR ERVK 1 436 0 2 617 894 88 0 0 chr9 4271112 4271237 -119804935 + (TA)n Simple_repeat Simple_repeat 1 125 0 2 617 194 255 20 0 chr9 4271237 4271281 -119804891 - L2 LINE L2 -2069 1350 1306 2 617 206 0 69 0 chr9 4272397 4272426 -119803746 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 617 395 323 32 8 chr9 4272428 4272553 -119803619 - B1F SINE Alu -10 139 12 2 617 275 368 50 88 chr9 4272553 4272610 -119803562 - ID_B1 SINE B4 -10 214 40 2 617 3103 40 0 0 chr9 4272674 4273024 -119803148 - L1Md_T LINE L1 0 6582 6233 2 617 756 229 21 7 chr9 4273530 4273671 -119802501 - B1_Mus1 SINE Alu -1 147 5 2 617 850 169 59 48 chr9 4273675 4273862 -119802310 - B2_Mm2 SINE B2 -5 190 2 2 617 276 290 20 0 chr9 4274154 4274254 -119801918 + (TA)n Simple_repeat Simple_repeat 1 102 0 2 617 215 31 31 0 chr9 4274805 4274837 -119801335 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 617 234 272 132 71 chr9 4274966 4275148 -119801024 - RLTR25A LTR ERVK 0 1103 911 2 617 203 146 24 0 chr9 4275403 4275444 -119800728 + CT-rich Low_complexity Low_complexity 3 44 0 2 617 5644 119 15 80 chr9 4276020 4276686 -119799486 + L1VL1 LINE L1 195 849 -5573 2 617 1098 103 0 14 chr9 4276686 4276834 -119799338 + B1_Mus1 SINE Alu 2 147 -1 2 617 5691 116 51 20 chr9 4276834 4277981 -119798191 + L1VL1 LINE L1 850 1990 -1708 2 617 25922 112 21 1 chr9 4277977 4282807 -119793365 + L1_Mus3 LINE L1 1691 6621 -17 2 617 219 69 0 0 chr9 4282807 4282836 -119793336 + (TAA)n Simple_repeat Simple_repeat 3 31 0 2 617 2267 109 44 10 chr9 4283946 4284336 -119791836 + RLTR9D LTR ERVK 1 403 0 2 617 240 319 26 65 chr9 4284427 4284504 -119791668 + ORR1E LTR MaLR 56 129 -230 2 617 248 216 26 165 chr9 4284565 4284644 -119791528 + ORR1E LTR MaLR 235 325 -54 2 617 365 305 59 101 chr9 4284709 4284732 -119791440 + MLT1B LTR MaLR 162 184 -206 2 617 654 196 60 0 chr9 4284732 4284865 -119791307 + B1_Mur4 SINE Alu 2 142 -8 2 617 207 0 0 0 chr9 4284869 4284892 -119791280 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 617 365 305 59 101 chr9 4284892 4285100 -119791072 + MLT1B LTR MaLR 185 382 -8 2 617 220 425 0 0 chr9 4285677 4285764 -119790408 - B1F SINE Alu -61 88 2 3 617 204 40 0 0 chr9 4285778 4285803 -119790369 + (T)n Simple_repeat Simple_repeat 1 25 0 3 617 2803 40 27 30 chr9 4285945 4286311 -119789861 + RLTR10B2 LTR ERVK 1 365 0 3 617 346 211 76 84 chr9 4286639 4286758 -119789414 - RMER15 LTR ERVL -457 118 1 3 617 460 215 65 26 chr9 4286766 4286919 -119789253 - L1MA4 LINE L1 -433 5867 5709 3 617 2033 287 134 35 chr9 4287724 4288478 -119787694 - Lx8 LINE L1 -372 7101 6273 3 617 205 200 0 0 chr9 4288520 4288560 -119787612 + A-rich Low_complexity Low_complexity 1 40 0 3 617 260 197 0 78 chr9 4288576 4288653 -119787519 + Lx8 LINE L1 7397 7467 -6 3 617 1632 206 64 62 chr9 4288959 4289379 -119786793 + MTC LTR MaLR 1 421 0 3 617 21 0 0 0 chr9 4289508 4289529 -119786643 + AT_rich Low_complexity Low_complexity 1 21 0 3 617 16693 151 24 8 chr9 4289553 4293443 -119782729 + Lx LINE L1 2710 6654 0 3 617 660 124 0 0 chr9 4293444 4293549 -119782623 + (GAA)n Simple_repeat Simple_repeat 3 107 0 3 617 432 0 0 0 chr9 4293549 4293597 -119782575 + (TAA)n Simple_repeat Simple_repeat 2 49 0 3 617 4694 58 45 5 chr9 4293838 4294464 -119781708 - L1Md_T LINE L1 -249 6333 5683 3 617 1924 25 12 28 chr9 4294464 4294714 -119781458 + L1Md_F3 LINE L1 6339 6584 0 3 617 22 56 0 0 chr9 4294714 4294750 -119781422 + AT_rich Low_complexity Low_complexity 1 36 0 3 617 25 0 0 0 chr9 4294794 4294819 -119781353 + AT_rich Low_complexity Low_complexity 1 25 0 3 617 1923 147 17 55 chr9 4295576 4295946 -119780226 + ORR1A4 LTR MaLR 5 360 -14 3 617 351 0 0 0 chr9 4297390 4297429 -119778743 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 617 301 300 56 40 chr9 4297563 4297689 -119778483 - MIRb SINE MIR -39 169 43 3 617 1522 279 166 16 chr9 4297741 4298372 -119777800 + Lx8 LINE L1 6593 7318 -155 3 617 180 0 0 0 chr9 4298383 4298403 -119777769 + (CAA)n Simple_repeat Simple_repeat 1 20 0 3 617 207 0 0 0 chr9 4299077 4299100 -119777072 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 617 363 223 20 69 chr9 4299573 4299674 -119776498 + MTC LTR MaLR 1 96 -325 3 617 6572 158 90 57 chr9 4299675 4300145 -119776027 + L1_Mur2 LINE L1 3949 4471 -1702 3 617 229 261 0 68 chr9 4300145 4300219 -119775953 - RMER21A LTR ERV1 -459 488 420 3 617 6572 158 90 57 chr9 4300219 4301114 -119775058 + L1_Mur2 LINE L1 4472 5469 -704 3 617 3797 108 109 10 chr9 4301114 4301737 -119774435 + Lx LINE L1 5966 6650 -4 3 617 390 277 43 19 chr9 4301737 4301784 -119774388 + L1_Mur2 LINE L1 5470 5523 -650 3 617 393 84 0 40 chr9 4301792 4301866 -119774306 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 3 617 1408 183 169 0 chr9 4301866 4302156 -119774016 + MTC LTR MaLR 83 421 0 3 617 23 54 0 0 chr9 4303236 4303273 -119772899 + AT_rich Low_complexity Low_complexity 1 37 0 3 617 289 154 9 1 chr9 4303368 4303417 -119772755 + ID4_ SINE ID 11 67 -85 3 617 1148 75 0 0 chr9 4303417 4303564 -119772608 + B1_Mm SINE Alu 1 147 0 3 617 258 186 141 20 chr9 4303564 4303613 -119772559 + BC1_Mm scRNA scRNA 68 120 -32 3 617 399 341 78 53 chr9 4304534 4304816 -119771356 + B4A SINE B4 2 290 -2 3 617 21 0 0 0 chr9 4305215 4305236 -119770936 + AT_rich Low_complexity Low_complexity 1 21 0 3 617 504 227 0 0 chr9 4305287 4305406 -119770766 + (TA)n Simple_repeat Simple_repeat 2 120 0 3 617 3395 39 85 2 chr9 4305706 4306143 -119770029 + MT2C_Mm LTR ERVL 1 473 -2 3 617 684 295 29 97 chr9 4306172 4306480 -119769692 + B4 SINE B4 4 290 -2 3 617 316 298 24 0 chr9 4306958 4307042 -119769130 - B1F1 SINE Alu -41 108 23 3 617 189 318 124 90 chr9 4310906 4311172 -119765000 - L2 LINE L2 -1415 2004 1730 3 617 895 161 42 36 chr9 4311302 4311495 -119764677 + B2_Mm2 SINE B2 2 195 0 3 617 508 293 140 28 chr9 4311851 4312065 -119764107 + MIR SINE MIR 3 240 -22 3 617 493 174 198 141 chr9 4312151 4312299 -119763873 + MT2B LTR ERVL 385 554 -47 3 617 534 16 0 0 chr9 4312299 4312362 -119763810 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 617 493 169 221 157 chr9 4312362 4312432 -119763740 + MT2B LTR ERVL 555 601 0 3 617 22 56 0 0 chr9 4312532 4312568 -119763604 + AT_rich Low_complexity Low_complexity 1 36 0 3 617 24 32 0 0 chr9 4312613 4312644 -119763528 + AT_rich Low_complexity Low_complexity 1 31 0 3 617 225 294 128 21 chr9 4312845 4312939 -119763233 + RMER10A LTR ERVL 324 427 -15 3 617 477 47 0 0 chr9 4313038 4313102 -119763070 + (T)n Simple_repeat Simple_repeat 1 64 0 3 617 573 147 0 0 chr9 4313150 4313259 -119762913 + (GA)n Simple_repeat Simple_repeat 2 110 0 3 617 313 246 14 5 chr9 4313491 4313578 -119762594 + PB1D9 SINE Alu 22 110 -10 3 617 806 183 0 27 chr9 4313687 4313833 -119762339 - B1_Mus1 SINE Alu -6 142 1 3 617 456 360 139 40 chr9 4314950 4315202 -119760970 + B4 SINE B4 3 279 -13 3 617 250 281 200 44 chr9 4315356 4315516 -119760656 + MLT1F2 LTR MaLR 368 552 -8 3 617 1795 182 25 14 chr9 4315808 4316171 -119760001 - ORR1B2 LTR MaLR 0 367 1 3 617 23 33 0 0 chr9 4317097 4317127 -119759045 + AT_rich Low_complexity Low_complexity 1 30 0 3 617 1161 74 0 0 chr9 4317466 4317614 -119758558 + B1_Mus1 SINE Alu 1 148 0 3 617 262 235 0 0 chr9 4319492 4319543 -119756629 + B1F SINE Alu 18 68 -81 3 617 1177 73 17 6 chr9 4320256 4320436 -119755736 + L1_Mus3 LINE L1 6457 6638 0 3 617 285 393 14 78 chr9 4320508 4320726 -119755446 + MIR SINE MIR 45 248 -14 3 617 24 0 0 0 chr9 4321092 4321116 -119755056 + AT_rich Low_complexity Low_complexity 1 24 0 3 617 305 298 49 6 chr9 4321320 4321482 -119754690 - L1MA4A LINE L1 -397 5906 5738 3 77 21914 156 53 15 chr9 4321516 4327560 -119748612 - Lx LINE L1 0 6654 366 3 618 38 0 0 0 chr9 4327597 4327635 -119748537 + AT_rich Low_complexity Low_complexity 1 38 0 3 618 593 151 36 36 chr9 4327715 4327825 -119748347 - B2_Mm2 SINE B2 -84 111 2 3 618 941 221 82 5 chr9 4328098 4328294 -119747878 + B3 SINE B2 1 211 -5 3 618 829 189 227 50 chr9 4328769 4329086 -119747086 - ORR1D1 LTR MaLR -1 373 1 3 618 187 292 62 0 chr9 4329841 4329906 -119746266 + L3 LINE CR1 2725 2793 -1696 3 618 22 35 0 0 chr9 4331968 4331997 -119744175 + AT_rich Low_complexity Low_complexity 1 29 0 3 618 29675 102 37 3 chr9 4332067 4333737 -119742435 + L1Md_F2 LINE L1 510 2240 -3643 3 618 3624 25 121 0 chr9 4333737 4334177 -119741995 + MT2_Mm LTR ERVL 1 493 0 3 618 29675 81 10 5 chr9 4334177 4337504 -119738668 + L1Md_F2 LINE L1 2241 5586 -297 3 618 7397 67 13 8 chr9 4337505 4338483 -119737689 + L1Md_F2 LINE L1 5588 6570 -12 3 618 23 0 0 0 chr9 4338526 4338549 -119737623 + AT_rich Low_complexity Low_complexity 1 23 0 3 618 914 219 59 0 chr9 4339076 4339314 -119736858 - L1MA4 LINE L1 -375 5925 5674 3 618 23 33 0 0 chr9 4340646 4340676 -119735496 + AT_rich Low_complexity Low_complexity 1 30 0 3 618 434 193 45 0 chr9 4341404 4341492 -119734680 + URR1B DNA MER1_type 59 150 -75 3 618 24 53 0 0 chr9 4341882 4341920 -119734252 + AT_rich Low_complexity Low_complexity 1 38 0 3 618 273 241 24 2 chr9 4342807 4342878 -119733294 + ORR1D1 LTR MaLR 21 94 -290 3 618 1878 273 32 61 chr9 4342885 4343510 -119732662 + RLTR18 LTR ERVK 10 616 0 3 618 180 0 0 0 chr9 4343775 4343795 -119732377 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 618 920 222 222 55 chr9 4343892 4344275 -119731897 - Lx8 LINE L1 -360 7113 6667 3 618 1718 171 13 77 chr9 4344286 4344665 -119731507 - ORR1B1 LTR MaLR 0 394 40 3 618 402 322 0 0 chr9 4344669 4344790 -119731382 - Lx8 LINE L1 -843 6630 6510 3 618 817 56 19 0 chr9 4344854 4344962 -119731210 - L1_Mm LINE L1 -270 5613 5504 3 618 3674 65 35 30 chr9 4344962 4345469 -119730703 + L1Md_F2 LINE L1 6061 6570 -12 3 618 844 296 109 34 chr9 4345492 4345814 -119730358 - MTE2a LTR MaLR -30 349 4 3 618 1137 190 15 0 chr9 4346019 4346214 -119729958 - ORR1B2 LTR MaLR -5 362 165 3 618 769 273 18 27 chr9 4346231 4346453 -119729719 - Lx6 LINE L1 -100 7360 7141 3 618 513 0 0 0 chr9 4346453 4346510 -119729662 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 618 243 202 24 12 chr9 4346510 4346595 -119729577 + (TA)n Simple_repeat Simple_repeat 1 86 0 3 618 5046 225 47 41 chr9 4346616 4347792 -119728380 - Lx6 LINE L1 -332 7128 5953 3 618 1346 140 181 114 chr9 4347792 4348195 -119727977 - RLTR23 LTR ERV1 0 430 1 3 618 5046 225 47 41 chr9 4348195 4348432 -119727740 - Lx6 LINE L1 -1508 5952 5707 3 618 333 0 0 0 chr9 4348500 4348537 -119727635 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 618 1507 76 0 0 chr9 4349756 4349954 -119726218 + L1_Mus1 LINE L1 6151 6348 -219 3 618 468 301 116 20 chr9 4349954 4350100 -119726072 - B3A SINE B2 -33 165 6 3 618 21 0 0 0 chr9 4350174 4350195 -119725977 + AT_rich Low_complexity Low_complexity 1 21 0 3 618 356 280 405 6 chr9 4350195 4350392 -119725780 + B4A SINE B4 1 274 -18 3 618 281 258 40 30 chr9 4350784 4350884 -119725288 - PB1D10 SINE Alu 0 117 17 3 618 213 191 43 0 chr9 4350854 4350901 -119725271 - B4A SINE B4 -161 131 83 3 618 325 344 61 41 chr9 4351130 4351277 -119724895 - Lx8 LINE L1 0 7473 7334 3 618 288 0 0 0 chr9 4351277 4351309 -119724863 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 618 325 344 61 41 chr9 4351309 4351455 -119724717 - Lx8 LINE L1 -140 7333 7175 3 618 6979 85 13 2 chr9 4351479 4353009 -119723163 + L1_Mus1 LINE L1 5021 6567 0 3 618 1082 90 7 7 chr9 4353033 4353179 -119722993 + B1_Mus1 SINE Alu 3 148 0 3 618 489 138 0 0 chr9 4353182 4353276 -119722896 + (A)n Simple_repeat Simple_repeat 1 94 0 3 618 340 0 59 20 chr9 4353559 4353610 -119722562 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 3 618 572 253 27 0 chr9 4354473 4354619 -119721553 - Lx8 LINE L1 -256 7217 7068 4 618 4108 39 0 0 chr9 4355049 4355531 -119720641 - LTRIS_Mm LTR ERV1 0 482 1 4 618 279 286 0 42 chr9 4355630 4355725 -119720447 - Lx8 LINE L1 -467 7006 6916 4 618 236 329 206 50 chr9 4356105 4356781 -119719391 + L2 LINE L2 2198 2978 -441 4 618 237 330 10 41 chr9 4357243 4357341 -119718831 + B1_Mus2 SINE Alu 37 131 -16 4 618 29 47 0 0 chr9 4357344 4357387 -119718785 + AT_rich Low_complexity Low_complexity 1 43 0 4 618 22 56 0 0 chr9 4357419 4357455 -119718717 + AT_rich Low_complexity Low_complexity 1 36 0 4 618 784 236 84 6 chr9 4357468 4357647 -119718525 - ORR1C2 LTR MaLR -20 364 172 4 618 1641 131 78 0 chr9 4357672 4357978 -119718194 - L1_Mur2 LINE L1 -473 5404 5075 4 618 2766 156 47 7 chr9 4357975 4358531 -119717641 + Lx2B LINE L1 5671 6248 -752 4 618 200 59 29 0 chr9 4359361 4359395 -119716777 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 618 1735 32 0 18 chr9 4359400 4359620 -119716552 - L1Md_F3 LINE L1 -17 6567 6352 4 618 2368 174 48 67 chr9 4359634 4359858 -119716314 + RMER20A LTR ERVK 3 250 -266 4 618 3926 48 2 32 chr9 4359858 4360355 -119715817 - LTRIS_Mm LTR ERV1 0 482 1 4 618 2368 174 48 67 chr9 4360355 4360654 -119715518 + RMER20A LTR ERVK 251 516 0 4 618 393 247 11 21 chr9 4361708 4361803 -119714369 - RSINE1 SINE B4 0 165 72 4 618 641 302 14 93 chr9 4361804 4362082 -119714090 + RLTR11B LTR ERVK 1 256 -197 4 618 719 250 31 16 chr9 4362152 4362343 -119713829 + RLTR11B LTR ERVK 257 450 -3 4 618 236 344 16 0 chr9 4362353 4362417 -119713755 - RSINE1 SINE B4 -91 74 10 4 618 260 333 78 28 chr9 4362623 4362765 -119713407 - MLT1G3 LTR MaLR -440 155 7 4 618 433 322 33 49 chr9 4362792 4362975 -119713197 - ID_B1 SINE B4 -43 181 2 4 618 3351 157 22 24 chr9 4363577 4364283 -119711889 + L1VL4 LINE L1 56 950 -5352 4 618 1251 199 94 34 chr9 4364290 4364587 -119711585 - RLTR46 LTR ERVK -5 315 1 4 618 16847 77 14 16 chr9 4364587 4365904 -119710268 + MusHAL1 LINE L1 98 1401 -1311 4 618 2085 151 42 20 chr9 4365904 4366310 -119709862 - RLTR9F LTR ERVK 0 415 1 4 618 16847 77 14 16 chr9 4366310 4367344 -119708828 + MusHAL1 LINE L1 1402 2450 -262 4 618 2869 58 37 8 chr9 4367344 4367727 -119708445 + MTA_Mm LTR MaLR 1 394 -2 4 618 16847 77 14 16 chr9 4367727 4367995 -119708177 + MusHAL1 LINE L1 2451 2712 0 4 618 3031 130 126 63 chr9 4368037 4368798 -119707374 - RMER17D2 LTR ERVK 0 809 1 4 618 212 213 21 21 chr9 4369686 4369734 -119706438 + L2c LINE L2 3340 3387 0 4 618 585 239 249 10 chr9 4369886 4370202 -119705970 - Lx6 LINE L1 -329 7131 6741 4 618 1934 233 115 25 chr9 4370228 4370827 -119705345 - Lx6 LINE L1 -1188 6272 5620 4 618 290 208 52 0 chr9 4370821 4370898 -119705274 - Lx6 LINE L1 -6787 941 861 4 618 292 200 0 0 chr9 4370923 4370988 -119705184 - Lx6 LINE L1 -7438 290 226 4 618 3009 49 8 8 chr9 4370988 4371380 -119704792 - MTB LTR MaLR 0 400 9 4 618 343 294 76 58 chr9 4371405 4371721 -119704451 - L1_Mur3 LINE L1 -7096 616 157 4 618 180 0 0 0 chr9 4371953 4371973 -119704199 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 4 618 564 15 0 0 chr9 4372054 4372119 -119704053 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 4 618 31 58 0 0 chr9 4372585 4372637 -119703535 + AT_rich Low_complexity Low_complexity 1 52 0 4 618 24 32 0 0 chr9 4372719 4372750 -119703422 + AT_rich Low_complexity Low_complexity 1 31 0 4 618 1091 68 7 7 chr9 4372964 4373111 -119703061 + B1_Mus2 SINE Alu 1 147 0 4 618 229 222 16 0 chr9 4373111 4373174 -119702998 + (CAAA)n Simple_repeat Simple_repeat 3 66 0 4 618 710 314 80 59 chr9 4373639 4373977 -119702195 - MLT1A0 LTR MaLR -4 361 17 4 618 1895 109 20 14 chr9 4374752 4375049 -119701123 + L1_Mus4 LINE L1 6332 6630 -6 4 618 189 0 0 0 chr9 4375155 4375176 -119700996 + (A)n Simple_repeat Simple_repeat 1 21 0 4 618 1019 60 82 0 chr9 4375386 4375520 -119700652 + B1_Mus1 SINE Alu 4 148 0 4 618 214 109 36 18 chr9 4375521 4375577 -119700595 + A-rich Low_complexity Low_complexity 3 59 0 4 618 204 245 0 0 chr9 4375582 4375635 -119700537 + GA-rich Low_complexity Low_complexity 3 55 0 4 618 729 88 0 0 chr9 4377230 4377332 -119698840 + (TTTC)n Simple_repeat Simple_repeat 2 103 0 4 618 915 245 229 65 chr9 4378014 4378534 -119697638 - MT2A LTR ERVL -6 527 6 4 618 312 295 13 0 chr9 4379691 4379769 -119696403 + B4A SINE B4 1 79 -213 4 618 278 320 78 0 chr9 4380010 4380113 -119696059 + MER33 DNA MER1_type 1 111 -213 4 618 473 295 60 7 chr9 4380839 4380989 -119695183 - RSINE1 SINE B4 -5 160 3 4 618 628 285 117 6 chr9 4381825 4382005 -119694167 + ID_B1 SINE B4 3 202 -22 4 618 224 188 0 158 chr9 4382232 4382308 -119693864 - ID4 SINE ID -8 75 12 4 618 1442 50 0 0 chr9 4382951 4383133 -119693039 + L1Md_F3 LINE L1 6384 6565 -19 4 618 210 71 0 0 chr9 4383429 4383457 -119692715 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 618 389 262 170 27 chr9 4385620 4385808 -119690364 + MER20 DNA MER1_type 1 215 -4 4 618 6252 43 0 0 chr9 4387072 4387822 -119688350 - L1Md_A LINE L1 0 6582 5833 4 618 33745 46 2 16 chr9 4387826 4392740 -119683432 - L1Md_F LINE L1 -539 5344 508 4 618 6171 222 135 30 chr9 4392867 4393472 -119682700 - Lx7 LINE L1 -199 7497 6751 4 618 589 166 380 0 chr9 4393472 4393635 -119682537 - URR1B DNA MER1_type 0 225 1 4 618 6171 222 135 30 chr9 4393635 4394184 -119681988 - Lx7 LINE L1 -946 6750 6175 4 618 537 58 0 0 chr9 4394184 4394253 -119681919 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 618 6171 190 111 27 chr9 4394253 4395880 -119680292 - Lx7 LINE L1 -1522 6174 4424 4 618 8992 112 21 8 chr9 4395905 4396956 -119679216 - Lx3A LINE L1 -6 6975 5915 4 618 408 40 0 0 chr9 4396956 4397006 -119679166 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 4 618 9001 82 29 9 chr9 4397006 4398321 -119677851 - Lx3A LINE L1 -1067 5914 4570 4 618 13663 92 31 29 chr9 4398299 4400487 -119675685 - Lx3A LINE L1 -2117 3769 1578 4 618 2612 139 11 5 chr9 4400472 4400905 -119675267 - Lx2B LINE L1 -595 6405 5970 4 618 34780 65 16 11 chr9 4400914 4406017 -119670155 + L1Md_A LINE L1 446 5586 -297 4 618 7775 53 9 0 chr9 4406017 4406992 -119669180 + L1Md_F3 LINE L1 5587 6570 -14 4 618 34780 46 2 2 chr9 4406992 4407004 -119669168 + L1Md_A LINE L1 5587 5596 -287 4 618 7586 105 52 18 chr9 4406995 4407329 -119668843 - Lx2B LINE L1 -1014 5986 5643 4 618 2211 11 114 0 chr9 4407329 4407591 -119668581 + RLTR10B LTR ERVK 1 292 0 4 618 7586 205 34 76 chr9 4407591 4409394 -119666778 - Lx2B LINE L1 -238 5642 3923 4 618 4019 168 105 16 chr9 4409515 4410487 -119665685 - L1_Mur3 LINE L1 -1583 4297 3240 4 618 854 254 20 54 chr9 4410501 4411009 -119665163 + BGLII_B LTR ERVK 15 432 -9 4 618 3296 168 57 21 chr9 4411017 4411503 -119664669 - L1_Mur3 LINE L1 -2635 3245 2742 4 618 374 0 0 21 chr9 4411503 4411550 -119664622 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 4 618 3296 168 57 21 chr9 4411550 4411817 -119664355 - L1_Mur3 LINE L1 -3139 2741 2467 4 618 785 133 30 0 chr9 4411826 4411961 -119664211 - L1_Mur3 LINE L1 -3921 1959 1821 4 618 577 168 0 10 chr9 4411972 4412074 -119664098 - L1_Mur3 LINE L1 -3428 2452 2352 4 618 186 128 0 0 chr9 4412105 4412144 -119664028 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 4 618 665 245 226 15 chr9 4412685 4412950 -119663222 + ORR1D1 LTR MaLR 3 323 -51 4 618 374 271 146 58 chr9 4413763 4413900 -119662272 + B4 SINE B4 2 150 -142 4 618 540 137 147 0 chr9 4413902 4414004 -119662168 - ORR1B1 LTR MaLR -2 392 276 4 618 477 226 90 45 chr9 4414576 4414710 -119661462 - B1F SINE Alu 0 149 10 4 618 422 360 66 7 chr9 4414774 4414925 -119661247 - RSINE1 SINE B4 -2 163 4 4 618 573 320 22 11 chr9 4414984 4415167 -119661005 - B3A SINE B2 -12 186 2 4 618 331 257 117 90 chr9 4415942 4416130 -119660042 + B2_Mm2 SINE B2 1 193 -2 4 618 234 0 0 0 chr9 4416535 4416561 -119659611 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 618 912 138 72 33 chr9 4417052 4417232 -119658940 - B2_Mm2 SINE B2 -7 188 2 4 618 234 288 195 41 chr9 4417264 4417387 -119658785 - RSINE1 SINE B4 -19 146 5 4 618 1338 55 37 27 chr9 4417420 4417607 -119658565 + B2_Mm2 SINE B2 2 190 -5 4 618 257 48 48 0 chr9 4417702 4417744 -119658428 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 618 240 111 0 0 chr9 4417817 4417862 -119658310 + (T)n Simple_repeat Simple_repeat 1 45 0 4 618 928 311 38 64 chr9 4417891 4418234 -119657938 - L2b LINE L2 0 3375 3042 4 618 26 93 0 0 chr9 4420529 4420604 -119655568 + AT_rich Low_complexity Low_complexity 1 75 0 4 618 315 49 0 0 chr9 4420808 4420849 -119655323 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 618 270 258 0 20 chr9 4421754 4421853 -119654319 + (TCTCTG)n Simple_repeat Simple_repeat 2 98 0 4 618 243 241 0 0 chr9 4421816 4421870 -119654302 + CT-rich Low_complexity Low_complexity 1 54 0 4 618 363 378 0 8 chr9 4422064 4422192 -119653980 - B1F SINE Alu -6 143 17 4 618 309 64 0 0 chr9 4422227 4422274 -119653898 - L1_Mus2 LINE L1 -2 6564 6518 4 618 22 56 0 0 chr9 4422556 4422592 -119653580 + AT_rich Low_complexity Low_complexity 1 36 0 4 618 22 0 0 0 chr9 4423158 4423180 -119652992 + AT_rich Low_complexity Low_complexity 1 22 0 4 618 482 277 69 0 chr9 4425141 4425271 -119650901 - ID_B1 SINE B4 -6 218 80 4 618 634 219 172 16 chr9 4426271 4426457 -119649715 + B3 SINE B2 1 215 -1 4 618 25 65 0 0 chr9 4426790 4426836 -119649336 + AT_rich Low_complexity Low_complexity 1 46 0 4 618 29 47 0 0 chr9 4427767 4427810 -119648362 + AT_rich Low_complexity Low_complexity 1 43 0 4 618 677 23 11 0 chr9 4430036 4430123 -119646049 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 4 618 829 167 23 3 chr9 4430952 4431126 -119645046 - B3 SINE B2 -9 186 1 4 618 23 33 0 0 chr9 4431275 4431305 -119644867 + AT_rich Low_complexity Low_complexity 1 30 0 4 618 257 267 66 55 chr9 4431312 4431403 -119644769 + MLT1A0 LTR MaLR 3 94 -271 4 618 185 0 40 0 chr9 4433308 4433333 -119642839 + (CAA)n Simple_repeat Simple_repeat 1 26 0 4 618 575 287 68 81 chr9 4435172 4435555 -119640617 + MTE2a LTR MaLR 2 379 0 4 618 348 24 0 0 chr9 4435980 4436021 -119640151 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 618 290 98 0 19 chr9 4436044 4436096 -119640076 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 618 563 285 171 14 chr9 4436109 4436326 -119639846 - B4A SINE B4 -29 263 13 5 618 284 306 140 74 chr9 4439650 4439879 -119636293 - B4 SINE B4 -1 291 48 5 618 225 302 0 0 chr9 4440066 4440109 -119636063 - RSINE1 SINE B4 -15 150 108 5 618 21 36 0 0 chr9 4441361 4441389 -119634783 + AT_rich Low_complexity Low_complexity 1 28 0 5 618 800 180 18 30 chr9 4442984 4443150 -119633022 + B2_Mm2 SINE B2 1 164 -31 5 618 190 132 38 0 chr9 4443452 4443505 -119632667 + T-rich Low_complexity Low_complexity 1 55 0 5 618 22 35 0 0 chr9 4443528 4443557 -119632615 + AT_rich Low_complexity Low_complexity 1 29 0 5 618 202 189 227 13 chr9 4443837 4443912 -119632260 + MIRc SINE MIR 23 113 -155 5 618 236 217 0 72 chr9 4445311 4445505 -119630667 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 618 236 217 0 72 chr9 4445675 4445869 -119630303 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 618 236 217 0 72 chr9 4445883 4446077 -119630095 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 618 252 211 0 72 chr9 4446507 4446701 -119629471 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 618 1192 174 27 9 chr9 4447200 4447421 -119628751 + URR1B DNA MER1_type 1 225 0 5 618 544 324 7 0 chr9 4448834 4448976 -119627196 - ID_B1 SINE B4 -4 220 78 5 618 396 230 11 33 chr9 4449812 4449823 -119626349 - ORR1B1-int LTR MaLR -41 1539 1529 5 618 1822 171 96 22 chr9 4449823 4450188 -119625984 - ORR1B1 LTR MaLR 0 394 3 5 618 538 96 13 1 chr9 4450188 4450266 -119625906 - ORR1B1-int LTR MaLR 0 1370 1294 5 618 4007 178 61 65 chr9 4450263 4451257 -119624915 - ORR1B1-int LTR MaLR -971 992 3 5 618 1676 178 80 98 chr9 4451255 4451653 -119624519 - ORR1B1 LTR MaLR -3 391 1 5 618 26 50 0 0 chr9 4451742 4451782 -119624390 + AT_rich Low_complexity Low_complexity 1 40 0 5 618 891 246 133 35 chr9 4451787 4452103 -119624069 + Lx8 LINE L1 7121 7467 -6 5 618 24 32 0 0 chr9 4452110 4452141 -119624031 + AT_rich Low_complexity Low_complexity 1 31 0 5 618 21 57 0 0 chr9 4452257 4452292 -119623880 + AT_rich Low_complexity Low_complexity 1 35 0 5 619 333 217 0 0 chr9 4456687 4456770 -119619402 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 619 242 195 84 12 chr9 4456770 4456936 -119619236 + (TA)n Simple_repeat Simple_repeat 1 178 0 5 619 673 324 72 9 chr9 4457313 4457405 -119618767 - B4 SINE B4 0 292 197 5 619 2495 148 83 0 chr9 4457405 4457839 -119618333 - Lx2 LINE L1 0 6997 6528 5 619 673 324 72 9 chr9 4457839 4457967 -119618205 - B4 SINE B4 -96 196 58 5 619 21 0 0 0 chr9 4457973 4457994 -119618178 + AT_rich Low_complexity Low_complexity 1 21 0 5 619 357 295 61 18 chr9 4462560 4462674 -119613498 - B1F SINE Alu -21 128 10 5 619 262 313 48 87 chr9 4462567 4462693 -119613479 - ID_B1 SINE B4 -25 199 79 5 619 527 244 13 8 chr9 4462759 4462881 -119613291 - RSINE1 SINE B4 -40 125 2 5 619 315 0 0 0 chr9 4463080 4463115 -119613057 + (T)n Simple_repeat Simple_repeat 1 35 0 5 619 1222 27 7 0 chr9 4463115 4463262 -119612910 - B1_Mus1 SINE Alu 0 148 1 5 619 333 0 0 0 chr9 4463360 4463397 -119612775 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 619 253 101 49 37 chr9 4464699 4464781 -119611391 + T-rich Low_complexity Low_complexity 3 85 0 5 619 271 261 105 92 chr9 4465520 4465672 -119610500 - B3A SINE B2 -36 162 9 5 619 467 56 14 0 chr9 4466575 4466646 -119609526 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 619 1821 141 67 0 chr9 4466851 4467149 -119609023 + ORR1A3 LTR MaLR 1 318 -8 5 619 9598 151 75 15 chr9 4467153 4469005 -119607167 + ORR1A3-int LTR MaLR 1 1963 0 5 619 1548 124 161 0 chr9 4469005 4469278 -119606894 + ORR1A3 LTR MaLR 1 317 -9 5 619 38 39 0 0 chr9 4469526 4469578 -119606594 + AT_rich Low_complexity Low_complexity 1 52 0 5 619 1366 270 27 54 chr9 4469751 4470123 -119606049 + Lx6 LINE L1 6930 7291 -169 5 619 477 0 0 0 chr9 4470317 4470370 -119605802 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 619 184 45 20 137 chr9 4470422 4470473 -119605699 + T-rich Low_complexity Low_complexity 1 45 0 5 619 1160 34 0 26 chr9 4471141 4471293 -119604879 - B1_Mus1 SINE Alu 0 148 1 5 619 527 122 11 0 chr9 4471347 4471437 -119604735 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 619 21 71 0 0 chr9 4472392 4472434 -119603738 + AT_rich Low_complexity Low_complexity 1 42 0 5 619 21 0 0 0 chr9 4472929 4472950 -119603222 + AT_rich Low_complexity Low_complexity 1 21 0 5 619 315 185 0 0 chr9 4472990 4473082 -119603090 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 619 333 335 53 30 chr9 4474368 4474537 -119601635 - MIRb SINE MIR -24 244 72 5 619 835 188 0 27 chr9 4476043 4476191 -119599981 + B1_Mur4 SINE Alu 1 144 -6 5 619 522 0 0 0 chr9 4476217 4476275 -119599897 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 619 221 57 0 28 chr9 4476279 4476315 -119599857 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 5 619 210 37 0 0 chr9 4476502 4476529 -119599643 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 619 980 76 45 0 chr9 4476529 4476661 -119599511 - B1_Mus1 SINE Alu -10 138 1 5 619 318 246 123 31 chr9 4477434 4477578 -119598594 + L2a LINE L2 3245 3424 -2 5 619 612 140 0 0 chr9 4478115 4478222 -119597950 + (TA)n Simple_repeat Simple_repeat 2 108 0 5 619 210 143 0 0 chr9 4479414 4479449 -119596723 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 5 619 894 331 26 10 chr9 4480564 4480952 -119595220 - Lx9 LINE L1 -176 7468 7075 5 619 535 305 160 33 chr9 4481384 4481628 -119594544 + B4A SINE B4 1 275 -17 5 619 1660 151 7 18 chr9 4482012 4482296 -119593876 + RLTR22_Mur LTR ERVK 1 281 -1567 5 619 1924 86 19 4 chr9 4482303 4482572 -119593600 - L1_Mus1 LINE L1 -3 6564 6292 5 619 4943 42 0 3 chr9 4482572 4483170 -119593002 + L1Md_F2 LINE L1 5680 6275 -307 5 619 3297 128 7 11 chr9 4483170 4483374 -119592798 + RLTR22_Mur LTR ERVK 262 465 -1383 5 619 377 20 0 20 chr9 4483374 4483425 -119592747 + (CAAAA)n Simple_repeat Simple_repeat 4 53 0 5 619 3297 128 7 11 chr9 4483425 4483771 -119592401 + RLTR22_Mur LTR ERVK 466 809 -1039 5 619 723 123 0 34 chr9 4483925 4484043 -119592129 + RLTR22_Mur LTR ERVK 1592 1705 -143 5 619 639 57 0 0 chr9 4485514 4485602 -119590570 + (TC)n Simple_repeat Simple_repeat 1 88 0 5 619 198 0 0 0 chr9 4485602 4485623 -119590549 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 619 22 0 0 0 chr9 4486094 4486116 -119590056 + AT_rich Low_complexity Low_complexity 1 22 0 5 619 1036 113 0 0 chr9 4486136 4486277 -119589895 + B1_Mm SINE Alu 1 141 -6 5 619 18518 179 50 24 chr9 4486431 4491285 -119584887 + Lx LINE L1 300 5152 -734 5 619 2293 97 3 6 chr9 4491285 4491618 -119584554 + IAPLTR1a_Mm LTR ERVK 1 332 -5 5 619 54419 22 17 21 chr9 4491618 4498118 -119578054 + IAPEz-int LTR ERVK 6 6479 -2 5 619 2369 101 3 6 chr9 4498120 4498458 -119577714 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 619 6810 128 24 9 chr9 4498461 4499948 -119576224 + Lx LINE L1 5150 6654 0 5 619 241 242 113 0 chr9 4500018 4500080 -119576092 - B1_Mur3 SINE Alu -80 69 1 1 619 1070 267 109 6 chr9 4500166 4500486 -119575686 + RCHARR1 DNA MER1_type 127 479 -495 2 619 432 0 0 0 chr9 4500502 4500550 -119575622 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 3 619 274 389 71 0 chr9 4500557 4500670 -119575502 - ID_B1 SINE B4 -20 204 84 4 619 833 239 148 79 chr9 4500680 4501084 -119575088 + RCHARR1 DNA MER1_type 472 903 -71 2 619 2387 34 3 3 chr9 4501095 4501387 -119574785 + L1Md_F3 LINE L1 6275 6566 -18 5 619 936 299 54 62 chr9 4501481 4501849 -119574323 + MTE2a LTR MaLR 1 365 -14 6 619 841 342 58 35 chr9 4506248 4506648 -119569524 - MER82 DNA MER2_type -4 649 241 7 619 253 363 22 0 chr9 4506684 4506775 -119569397 - MER82 DNA MER2_type -491 162 70 7 619 2513 198 43 16 chr9 4506841 4507354 -119568818 + L1VL4 LINE L1 162 688 -5614 8 619 2763 77 15 2 chr9 4507350 4507756 -119568416 + L1M4 LINE L1 1521 1931 -1983 9 619 1952 148 22 32 chr9 4507762 4508162 -119568010 + L1M4 LINE L1 3277 3697 -2449 9 619 6630 38 1 0 chr9 4508159 4508981 -119567191 - L1_Mm LINE L1 -2301 3582 2760 1 619 8064 40 2 0 chr9 4508981 4509961 -119566211 + L1Md_F3 LINE L1 5589 6570 -14 1 619 8122 153 20 105 chr9 4509961 4511801 -119564371 + L1_Mur2 LINE L1 3653 5336 -541 1 619 1741 198 70 107 chr9 4511881 4512340 -119563832 + RMER6B LTR ERVK 2 443 -18 1 619 795 279 73 27 chr9 4512347 4512608 -119563564 - B4A SINE B4 -6 286 14 1 619 397 308 49 124 chr9 4512723 4512764 -119563408 + B3 SINE B2 2 42 -174 1 619 1622 26 11 0 chr9 4512764 4512954 -119563218 + B2_Mm1a SINE B2 2 193 0 1 619 397 308 49 124 chr9 4512954 4513099 -119563073 + B3 SINE B2 43 176 -40 1 619 221 0 35 0 chr9 4513099 4513128 -119563044 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 619 397 308 49 124 chr9 4513128 4513166 -119563006 + B3 SINE B2 177 210 -6 1 619 195 278 0 0 chr9 4514023 4514077 -119562095 - L2a LINE L2 0 3426 3373 1 619 294 164 0 0 chr9 4515411 4515466 -119560706 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 1 619 26 50 0 0 chr9 4515553 4515593 -119560579 + AT_rich Low_complexity Low_complexity 1 40 0 2 619 626 163 38 15 chr9 4516520 4516651 -119559521 + Lx2A1 LINE L1 6874 7007 -1 2 619 489 241 2 197 chr9 4516724 4516904 -119559268 - B1F SINE Alu 0 149 5 2 619 491 276 55 8 chr9 4516910 4517038 -119559134 - B1F SINE Alu -6 143 10 2 619 255 279 23 11 chr9 4517526 4517613 -119558559 - L1M4 LINE L1 -1957 4189 4102 2 619 592 298 27 14 chr9 4517629 4517850 -119558322 - ID_B1 SINE B4 0 224 1 2 619 22 0 0 0 chr9 4518942 4518964 -119557208 + AT_rich Low_complexity Low_complexity 1 22 0 2 619 26 0 0 0 chr9 4519266 4519292 -119556880 + AT_rich Low_complexity Low_complexity 1 26 0 2 619 542 243 83 28 chr9 4519729 4519873 -119556299 + RSINE1 SINE B4 4 155 -10 2 619 1329 247 99 0 chr9 4521241 4521593 -119554579 - MTD LTR MaLR 0 419 33 2 619 4581 101 30 50 chr9 4522163 4522926 -119553246 - RMER17A LTR ERVK -3 748 1 3 619 1586 289 104 13 chr9 4523942 4524546 -119551626 + Lx8 LINE L1 6815 7473 0 3 619 270 211 0 0 chr9 4525804 4525833 -119550339 + T-rich Low_complexity Low_complexity 43 71 0 3 619 1144 81 0 0 chr9 4525833 4525981 -119550191 - B1_Mus1 SINE Alu 0 148 1 3 619 270 211 0 0 chr9 4525981 4526022 -119550150 + T-rich Low_complexity Low_complexity 2 42 0 3 619 3676 239 41 7 chr9 4526766 4527648 -119548524 + Lx9 LINE L1 6588 7499 -145 3 619 596 129 32 0 chr9 4527722 4527846 -119548326 + GA-rich Low_complexity Low_complexity 2 129 0 3 619 491 318 8 8 chr9 4527874 4528004 -119548168 + B3A SINE B2 4 133 -65 3 619 510 17 0 0 chr9 4528012 4528071 -119548101 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 619 1196 35 7 0 chr9 4528722 4528867 -119547305 + B1_Mm SINE Alu 2 147 0 3 619 800 280 27 41 chr9 4529073 4529293 -119546879 + MTEb LTR MaLR 151 367 -12 4 619 198 0 0 0 chr9 4529753 4529775 -119546397 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 4 619 207 0 0 0 chr9 4529797 4529820 -119546352 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 619 1222 40 0 13 chr9 4529820 4529960 -119546212 - B1_Mus1 SINE Alu -8 140 1 4 619 288 0 0 0 chr9 4530782 4530814 -119545358 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 619 414 125 0 0 chr9 4532319 4532399 -119543773 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 619 282 116 0 0 chr9 4532431 4532474 -119543698 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 619 219 69 0 0 chr9 4532694 4532723 -119543449 + (GGA)n Simple_repeat Simple_repeat 2 30 0 4 619 504 247 30 106 chr9 4533048 4533082 -119543090 - B2_Mm2 SINE B2 -11 184 158 4 619 540 0 0 0 chr9 4533082 4533142 -119543030 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 619 622 241 39 14 chr9 4533142 4533306 -119542866 - B3 SINE B2 -38 157 1 4 619 27 0 0 0 chr9 4533471 4533498 -119542674 + AT_rich Low_complexity Low_complexity 1 27 0 5 619 213 216 39 0 chr9 4533566 4533617 -119542555 - B3A SINE B2 -145 53 1 5 619 215 127 36 18 chr9 4533631 4533687 -119542485 + T-rich Low_complexity Low_complexity 3 59 0 5 619 270 277 11 11 chr9 4534900 4534995 -119541177 + (TA)n Simple_repeat Simple_repeat 2 96 0 5 619 288 0 0 0 chr9 4535131 4535163 -119541009 + (CAATA)n Simple_repeat Simple_repeat 3 34 0 5 619 304 279 0 37 chr9 4535456 4535538 -119540634 + ID4_ SINE ID 2 80 -3 5 619 249 211 0 0 chr9 4535866 4535923 -119540249 + GA-rich Low_complexity Low_complexity 2 58 0 5 619 28 48 0 0 chr9 4536515 4536557 -119539615 + AT_rich Low_complexity Low_complexity 1 42 0 5 619 1142 68 7 0 chr9 4536634 4536781 -119539391 + B1_Mus1 SINE Alu 1 148 0 5 619 398 302 75 33 chr9 4538513 4538633 -119537539 + ID_B1 SINE B4 93 217 -7 5 619 489 358 13 7 chr9 4538667 4538816 -119537356 + RSINE1 SINE B4 4 153 -12 6 619 23 0 0 0 chr9 4539498 4539521 -119536651 + AT_rich Low_complexity Low_complexity 1 23 0 6 619 5669 91 14 0 chr9 4539677 4540597 -119535575 - L1_Mus4 LINE L1 0 6636 5832 6 619 203 192 39 0 chr9 4540844 4540896 -119535276 + CT-rich Low_complexity Low_complexity 2 55 0 6 619 671 323 71 45 chr9 4540938 4541204 -119534968 - B4A SINE B4 -18 274 2 6 619 22 35 0 0 chr9 4541624 4541653 -119534519 + AT_rich Low_complexity Low_complexity 1 29 0 6 619 681 117 8 15 chr9 4543069 4543199 -119532973 + L1Md_F2 LINE L1 6452 6580 -2 6 619 565 116 16 16 chr9 4543218 4543341 -119532831 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 6 619 460 189 16 8 chr9 4544531 4544654 -119531518 - Lx9 LINE L1 -8 7636 7513 6 619 21 57 0 0 chr9 4544764 4544799 -119531373 + AT_rich Low_complexity Low_complexity 1 35 0 6 619 779 321 62 26 chr9 4545190 4545494 -119530678 + MTE2b LTR MaLR 3 317 -62 7 619 210 118 0 0 chr9 4545524 4545558 -119530614 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 619 256 276 0 0 chr9 4545838 4545914 -119530258 + Lx7 LINE L1 7561 7636 -60 7 619 222 128 20 41 chr9 4546055 4546104 -119530068 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 7 619 480 289 157 0 chr9 4547778 4547975 -119528197 + L2a LINE L2 3199 3426 0 7 619 30127 122 11 10 chr9 4548469 4554846 -119521326 + L1_Mus2 LINE L1 261 6566 0 7 619 333 47 0 0 chr9 4556092 4556135 -119520037 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 619 7926 188 31 56 chr9 4556173 4556760 -119519412 + L1_Mur3 LINE L1 3511 4107 -1773 7 619 830 195 168 5 chr9 4556760 4556951 -119519221 - URR1B DNA MER1_type -2 223 2 7 619 7926 188 31 56 chr9 4556951 4558265 -119517907 + L1_Mur3 LINE L1 4108 5366 -514 7 619 373 307 8 30 chr9 4558267 4558398 -119517774 + Lx7 LINE L1 7239 7366 -330 7 619 324 0 0 0 chr9 4558407 4558443 -119517729 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 619 24 53 0 0 chr9 4558460 4558498 -119517674 + AT_rich Low_complexity Low_complexity 1 38 0 8 619 6278 92 2 2 chr9 4558536 4559386 -119516786 - L1_Mus4 LINE L1 -82 6554 5705 8 619 564 261 26 7 chr9 4559393 4559547 -119516625 + Lx7 LINE L1 7540 7696 0 7 619 282 73 0 0 chr9 4561284 4561325 -119514847 + (TA)n Simple_repeat Simple_repeat 2 42 0 8 619 7014 115 5 7 chr9 4562174 4563219 -119512953 + L1_Mus4 LINE L1 5587 6629 -7 8 619 315 0 0 0 chr9 4564538 4564573 -119511599 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 8 619 453 221 0 0 chr9 4565348 4565493 -119510679 + GA-rich Low_complexity Low_complexity 2 146 0 8 619 419 110 0 14 chr9 4565489 4565536 -119510636 + (GGA)n Simple_repeat Simple_repeat 2 47 0 8 619 1307 62 0 11 chr9 4565536 4565715 -119510457 + (GAA)n Simple_repeat Simple_repeat 3 179 0 8 619 419 110 0 14 chr9 4565715 4565741 -119510431 + (GGA)n Simple_repeat Simple_repeat 3 28 0 8 619 962 62 0 8 chr9 4565747 4565878 -119510294 + (GAA)n Simple_repeat Simple_repeat 3 132 0 9 619 322 368 77 47 chr9 4566378 4566665 -119509507 + L2a LINE L2 2706 3015 -404 9 619 576 115 0 0 chr9 4566665 4566769 -119509403 + (CA)n Simple_repeat Simple_repeat 1 104 0 9 619 322 368 42 69 chr9 4566769 4566940 -119509232 + L2a LINE L2 3016 3182 -244 9 619 22 80 0 0 chr9 4566976 4567026 -119509146 + AT_rich Low_complexity Low_complexity 1 50 0 9 619 23 54 0 0 chr9 4568953 4568990 -119507182 + AT_rich Low_complexity Low_complexity 1 37 0 9 619 26 64 0 0 chr9 4569248 4569295 -119506877 + AT_rich Low_complexity Low_complexity 1 47 0 9 619 969 130 5 45 chr9 4569553 4569755 -119506417 - Lx LINE L1 0 6654 6461 9 619 414 0 0 0 chr9 4570508 4570554 -119505618 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 9 619 509 277 28 117 chr9 4570617 4570830 -119505342 + B3A SINE B2 1 194 -4 9 619 180 0 0 0 chr9 4571428 4571448 -119504724 + (T)n Simple_repeat Simple_repeat 1 20 0 9 619 192 339 0 0 chr9 4571661 4571720 -119504452 + MIRc SINE MIR 109 167 -101 1 619 1249 122 21 5 chr9 4571748 4571937 -119504235 - B2_Mm2 SINE B2 -3 192 1 1 619 1391 202 73 61 chr9 4572093 4572221 -119503951 - Lx3C LINE L1 -23 6953 6833 1 619 833 50 21 28 chr9 4572221 4572365 -119503807 + (GGAGA)n Simple_repeat Simple_repeat 2 144 0 1 619 1391 202 73 61 chr9 4572365 4572631 -119503541 - Lx3C LINE L1 -144 6832 6554 1 619 28 91 0 0 chr9 4574854 4574931 -119501241 + AT_rich Low_complexity Low_complexity 1 77 0 1 619 379 291 63 76 chr9 4575395 4575618 -119500554 + HAL1 LINE L1 27 246 -2261 1 619 293 342 42 8 chr9 4576024 4576142 -119500030 + LTR40a LTR ERVL 140 261 -258 1 619 331 281 88 32 chr9 4576231 4576356 -119499816 + LTR40a LTR ERVL 386 517 -2 1 619 399 21 0 0 chr9 4576470 4576518 -119499654 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 619 423 242 84 0 chr9 4576653 4576748 -119499424 + B1_Mur2 SINE Alu 41 143 -6 1 619 23 0 0 0 chr9 4577554 4577577 -119498595 + AT_rich Low_complexity Low_complexity 1 23 0 1 619 294 143 0 0 chr9 4577577 4577626 -119498546 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 619 299 359 135 11 chr9 4577718 4578067 -119498105 + HERVL40-int LTR ERVL 2535 2926 -2604 1 619 3875 39 0 4 chr9 4578178 4578646 -119497526 + L1Md_F2 LINE L1 6115 6580 -2 1 619 468 285 14 35 chr9 4578876 4579018 -119497154 - B1F1 SINE Alu 0 149 11 1 619 581 309 62 92 chr9 4579829 4580154 -119496018 - MLT1B LTR MaLR 0 390 76 1 619 577 246 46 8 chr9 4580149 4580280 -119495892 - MTE2a LTR MaLR -31 348 213 1 619 438 135 0 0 chr9 4580284 4580358 -119495814 + L1_Mus2 LINE L1 6493 6566 0 1 619 735 188 0 0 chr9 4580365 4580541 -119495631 + GA-rich Low_complexity Low_complexity 3 178 0 1 619 794 265 22 54 chr9 4580559 4580782 -119495390 - MTE2a LTR MaLR -163 216 1 1 619 578 247 111 12 chr9 4580989 4581161 -119495011 - MTE2a LTR MaLR -4 375 187 1 619 250 211 123 0 chr9 4581234 4581291 -119494881 - MTE2a LTR MaLR -315 64 1 1 619 669 25 0 0 chr9 4581483 4581562 -119494610 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 619 307 427 0 8 chr9 4581577 4581702 -119494470 - RSINE1 SINE B4 -39 126 3 1 619 614 85 11 0 chr9 4582270 4582364 -119493808 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 1 619 327 305 93 88 chr9 4582371 4582587 -119493585 - ID_B1 SINE B4 -7 217 1 1 77 32755 93 17 5 chr9 4582877 4588917 -119487255 - L1Md_F2 LINE L1 -6 6576 461 1 620 380 202 0 22 chr9 4588890 4588981 -119487191 - L1Md_F2 LINE L1 -6359 257 169 1 620 2180 200 52 75 chr9 4589227 4589746 -119486426 + RMER1B Other Other 554 1060 -6 1 620 354 115 0 0 chr9 4589764 4589825 -119486347 + (GGA)n Simple_repeat Simple_repeat 2 62 0 1 620 1402 212 82 55 chr9 4591349 4591729 -119484443 + ORR1B1 LTR MaLR 5 394 0 1 620 190 273 32 15 chr9 4591932 4592009 -119484163 + MIR SINE MIR 76 154 -114 1 620 585 297 144 4 chr9 4592157 4592434 -119483738 - MLT1C LTR MaLR -67 400 85 1 620 180 329 13 13 chr9 4592873 4592950 -119483222 - MIRm SINE MIR -129 147 71 1 620 1282 91 0 16 chr9 4593239 4593428 -119482744 + B2_Mm2 SINE B2 2 187 -8 1 620 31 76 0 0 chr9 4593892 4593958 -119482214 + AT_rich Low_complexity Low_complexity 1 66 0 1 620 26 0 0 0 chr9 4594073 4594099 -119482073 + AT_rich Low_complexity Low_complexity 1 26 0 1 620 2137 181 105 36 chr9 4594546 4595040 -119481132 - RLTR11A LTR ERVK 0 528 1 1 620 2567 239 27 52 chr9 4595041 4595822 -119480350 - MYSERV16_I-int LTR ERVK -1 2325 1565 1 620 10560 163 17 10 chr9 4595822 4598485 -119477687 - Lx LINE L1 -3 6651 3965 1 620 4842 133 50 22 chr9 4598485 4599306 -119476866 + Lx LINE L1 5807 6650 -4 1 620 25 0 0 0 chr9 4600067 4600092 -119476080 + AT_rich Low_complexity Low_complexity 1 25 0 1 620 395 38 0 19 chr9 4600127 4600181 -119475991 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 1 620 323 290 158 19 chr9 4601276 4601434 -119474738 - MIRb SINE MIR 0 268 89 1 620 214 339 60 49 chr9 4601627 4601810 -119474362 + L2 LINE L2 2771 2955 -464 1 620 1160 286 86 47 chr9 4602353 4602735 -119473437 + MTD LTR MaLR 23 419 0 1 620 256 283 138 0 chr9 4603542 4603680 -119472492 + MER53 DNA hAT 21 177 -16 1 620 3207 151 11 13 chr9 4603804 4604326 -119471846 + Lx4A LINE L1 6533 7053 -5 1 620 243 88 0 0 chr9 4604485 4604519 -119471653 + (A)n Simple_repeat Simple_repeat 1 34 0 1 620 454 311 0 75 chr9 4606217 4606429 -119469743 - B3A SINE B2 -1 197 2 1 620 21 71 0 0 chr9 4606532 4606574 -119469598 + AT_rich Low_complexity Low_complexity 1 42 0 1 620 412 353 86 22 chr9 4606805 4606944 -119469228 - RSINE1 SINE B4 -16 149 2 1 620 8386 26 0 5 chr9 4607383 4608898 -119467274 - L1Md_A LINE L1 0 6582 5072 1 620 1304 318 102 13 chr9 4609001 4609549 -119466623 + Lx8 LINE L1 6620 7216 -257 1 620 258 325 25 42 chr9 4609566 4609685 -119466487 + RMER15 LTR ERVL 371 487 -88 1 620 465 19 0 0 chr9 4609840 4609894 -119466278 + (GGA)n Simple_repeat Simple_repeat 1 54 0 1 620 2069 297 32 42 chr9 4610230 4611035 -119465137 + Lx9 LINE L1 6669 7465 -179 1 620 279 355 34 55 chr9 4611609 4611755 -119464417 - B4A SINE B4 0 292 150 1 620 300 222 55 18 chr9 4612224 4612334 -119463838 + Lx3C LINE L1 6856 6969 -7 1 620 232 269 10 70 chr9 4612439 4612539 -119463633 - L1VL1 LINE L1 -6071 351 258 1 620 4319 56 0 0 chr9 4612559 4613099 -119463073 + L1_Mus2 LINE L1 5588 6127 -439 1 620 1928 284 46 36 chr9 4613187 4613905 -119462267 + Lx9 LINE L1 6592 7427 -217 1 620 219 88 0 0 chr9 4613905 4613939 -119462233 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 620 883 367 58 33 chr9 4613939 4614039 -119462133 + Lx9 LINE L1 7330 7429 -44 1 620 1072 276 52 7 chr9 4614709 4614814 -119461358 - Lx9 LINE L1 -9 7635 7520 1 620 1460 73 16 0 chr9 4614814 4615005 -119461167 - B2_Mm2 SINE B2 0 195 2 1 620 1072 276 52 7 chr9 4615005 4615322 -119460850 - Lx9 LINE L1 -125 7519 7195 1 620 417 303 101 118 chr9 4615618 4615914 -119460258 + B4A SINE B4 2 292 0 1 620 21 0 0 0 chr9 4615916 4615937 -119460235 + AT_rich Low_complexity Low_complexity 1 21 0 1 620 710 294 24 5 chr9 4615937 4616142 -119460030 + B3 SINE B2 1 209 -7 1 620 38 51 0 0 chr9 4616149 4616208 -119459964 + AT_rich Low_complexity Low_complexity 1 59 0 1 620 414 0 0 0 chr9 4616239 4616285 -119459887 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 620 902 293 41 99 chr9 4616827 4617270 -119458902 + MTD LTR MaLR 1 417 -2 1 620 785 291 15 0 chr9 4619002 4619201 -119456971 - ID_B1 SINE B4 -8 216 15 1 620 222 150 0 0 chr9 4619289 4619329 -119456843 + (T)n Simple_repeat Simple_repeat 1 40 0 1 620 3341 122 4 8 chr9 4619333 4619844 -119456328 - Lx3A LINE L1 -3 6978 6470 1 620 5099 96 4 7 chr9 4619845 4620589 -119455583 - L1_Mur1 LINE L1 -369 5517 4776 1 620 10549 105 18 1 chr9 4620590 4622224 -119453948 - L1_Mur1 LINE L1 -1392 4494 2833 1 620 10020 98 3 16 chr9 4622218 4623739 -119452433 + L1_Mur1 LINE L1 1327 2827 -3059 1 620 31331 91 22 11 chr9 4624363 4629659 -119446513 + L1Md_F2 LINE L1 244 5586 -297 1 620 7526 66 4 10 chr9 4629659 4630652 -119445520 + L1Md_F2 LINE L1 5587 6573 -9 1 620 3452 81 2 0 chr9 4630977 4631434 -119444738 - L1_Mus2 LINE L1 0 6566 6109 1 620 540 279 39 19 chr9 4633355 4633560 -119442612 - Charlie4a DNA MER1_type -4 504 296 1 620 281 26 26 0 chr9 4633820 4633858 -119442314 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 620 381 22 0 0 chr9 4634493 4634539 -119441633 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 620 334 364 55 68 chr9 4634560 4634796 -119441376 + Lx8 LINE L1 6991 7223 -250 1 620 311 65 0 21 chr9 4634899 4634946 -119441226 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 620 204 40 0 0 chr9 4634948 4634973 -119441199 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 620 189 0 0 0 chr9 4635270 4635291 -119440881 + (A)n Simple_repeat Simple_repeat 1 21 0 1 620 261 226 17 9 chr9 4637129 4637245 -119438927 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 620 232 164 58 29 chr9 4637249 4637318 -119438854 + (CATA)n Simple_repeat Simple_repeat 2 72 0 1 620 378 239 24 36 chr9 4637420 4637585 -119438587 + (CATATA)n Simple_repeat Simple_repeat 6 168 0 1 620 368 165 17 84 chr9 4637622 4637741 -119438431 + Lx9 LINE L1 7531 7641 -3 1 620 521 344 10 59 chr9 4637756 4637960 -119438212 - B3A SINE B2 -3 195 2 1 620 396 0 0 0 chr9 4639839 4639883 -119436289 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 620 28 0 0 0 chr9 4640040 4640068 -119436104 + AT_rich Low_complexity Low_complexity 1 28 0 1 620 707 293 146 44 chr9 4640709 4640950 -119435222 - MTD LTR MaLR -15 404 134 1 620 2967 62 0 0 chr9 4640950 4641321 -119434851 - L1_Mus1 LINE L1 0 6567 6197 1 620 707 293 146 44 chr9 4641321 4641400 -119434772 - MTD LTR MaLR -286 133 51 1 620 10103 70 5 1 chr9 4641797 4643134 -119433038 + L1Md_F2 LINE L1 4244 5585 -298 1 620 7450 67 16 2 chr9 4643135 4644117 -119432055 + L1Md_F2 LINE L1 5587 6582 0 1 620 23 68 0 0 chr9 4644173 4644217 -119431955 + AT_rich Low_complexity Low_complexity 1 44 0 1 620 385 340 128 21 chr9 4645289 4645617 -119430555 + ORR1D2 LTR MaLR 8 370 0 1 620 1341 174 171 6 chr9 4646167 4646335 -119429837 + RMER17C LTR ERVK 1 175 -235 1 620 540 0 0 0 chr9 4646335 4646395 -119429777 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 620 1341 174 171 6 chr9 4646395 4646578 -119429594 + RMER17C LTR ERVK 176 410 0 1 620 425 322 177 11 chr9 4646708 4647148 -119429024 + Lx9 LINE L1 7061 7573 -71 1 620 420 20 0 0 chr9 4647593 4647642 -119428530 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 620 1029 127 3 45 chr9 4648339 4648528 -119427644 + RLTR13B1 LTR ERVK 684 893 0 1 620 1140 75 0 0 chr9 4648568 4648714 -119427458 - B1_Mus2 SINE Alu 0 147 2 1 620 366 333 21 28 chr9 4648777 4648919 -119427253 + RSINE1 SINE B4 4 144 -21 1 620 303 130 0 0 chr9 4649492 4649546 -119426626 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 620 25 0 0 0 chr9 4649655 4649680 -119426492 + AT_rich Low_complexity Low_complexity 1 25 0 1 620 1065 115 0 0 chr9 4649779 4649927 -119426245 - B1_Mus1 SINE Alu 0 148 1 2 620 970 48 0 0 chr9 4650894 4651041 -119425131 + L1_Mus1 LINE L1 6438 6567 0 2 620 259 410 47 69 chr9 4651166 4651530 -119424642 - ORR1E LTR MaLR 0 359 4 2 620 296 349 33 13 chr9 4653442 4653593 -119422579 + MIR SINE MIR 8 161 -101 2 620 209 305 0 47 chr9 4653978 4654064 -119422108 - L2a LINE L2 -1 3425 3344 2 620 527 316 103 32 chr9 4654195 4654447 -119421725 + Lx8 LINE L1 7018 7287 -186 2 620 275 315 54 23 chr9 4654556 4654686 -119421486 - L2a LINE L2 -282 3144 3011 2 620 30 45 0 0 chr9 4654955 4654999 -119421173 + AT_rich Low_complexity Low_complexity 1 44 0 2 620 1278 312 62 12 chr9 4655133 4655629 -119420543 - Lx7 LINE L1 -384 7312 6792 2 620 406 349 39 39 chr9 4655646 4655828 -119420344 - MER58A DNA MER1_type -30 194 13 2 620 457 252 30 61 chr9 4656870 4657001 -119419171 - B1F SINE Alu 0 149 23 2 620 2091 149 31 167 chr9 4658817 4659331 -119416841 - RLTR41 LTR ERV1 -2 444 1 2 620 4469 131 38 75 chr9 4659730 4660670 -119415502 - RMER17A2 LTR ERVK 0 906 1 2 620 1994 44 4 0 chr9 4660671 4660920 -119415252 + L1Md_F3 LINE L1 6333 6582 -2 2 620 1154 241 37 8 chr9 4661047 4661290 -119414882 + ORR1C2 LTR MaLR 133 382 -2 2 620 21 0 0 0 chr9 4661589 4661610 -119414562 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 1104 69 7 7 chr9 4661610 4661756 -119414416 - B1_Mus2 SINE Alu 0 147 2 2 620 368 364 86 53 chr9 4661792 4662280 -119413892 - Lx8 LINE L1 -1 7472 6969 2 620 804 82 213 0 chr9 4662297 4662419 -119413753 - B1_Mus1 SINE Alu 0 148 1 2 620 335 370 8 16 chr9 4664076 4664205 -119411967 + MER21B LTR ERV1 571 698 -165 2 620 552 250 7 41 chr9 4664437 4664583 -119411589 - B1_Mur1 SINE Alu -8 141 1 2 620 429 20 0 0 chr9 4665870 4665920 -119410252 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 620 621 245 102 0 chr9 4666188 4666384 -119409788 - B3 SINE B2 0 216 1 2 620 1394 68 17 0 chr9 4666447 4666624 -119409548 - B2_Mm2 SINE B2 -15 180 1 2 620 24 32 0 0 chr9 4667117 4667148 -119409024 + AT_rich Low_complexity Low_complexity 1 31 0 2 620 360 0 0 0 chr9 4668066 4668106 -119408066 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 620 483 326 34 6 chr9 4670217 4670393 -119405779 + RMER15-int LTR ERVL 4222 4402 -597 2 620 21 36 0 0 chr9 4671134 4671162 -119405010 + AT_rich Low_complexity Low_complexity 1 28 0 2 620 2590 115 65 21 chr9 4671878 4672312 -119403860 + Lx2 LINE L1 6533 6985 -12 2 620 762 85 19 0 chr9 4672312 4672418 -119403754 - Lx2A1 LINE L1 -667 6341 6234 2 620 3331 124 69 46 chr9 4672418 4673052 -119403120 + Lx2A1 LINE L1 6360 7008 0 2 620 22 56 0 0 chr9 4673518 4673554 -119402618 + AT_rich Low_complexity Low_complexity 1 36 0 2 620 378 0 0 0 chr9 4674361 4674403 -119401769 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2 620 265 238 0 16 chr9 4675475 4675539 -119400633 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 620 351 281 0 53 chr9 4675542 4675636 -119400536 + PB1D10 SINE Alu 23 111 -6 2 620 2211 15 83 25 chr9 4676113 4676389 -119399783 - RLTR10B LTR ERVK 0 292 1 2 620 2173 16 4 12 chr9 4676754 4677012 -119399160 - L1Md_F2 LINE L1 -12 6570 6315 2 620 299 231 59 17 chr9 4677632 4677751 -119398421 - Lx9 LINE L1 0 7644 7521 2 620 450 0 0 0 chr9 4677890 4677940 -119398232 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 620 193 317 141 21 chr9 4678019 4678161 -119398011 + L2a LINE L2 3267 3425 -1 2 620 607 112 0 18 chr9 4678524 4678633 -119397539 + (TA)n Simple_repeat Simple_repeat 2 108 0 2 620 2292 53 0 0 chr9 4679829 4680113 -119396059 - L1_Mus1 LINE L1 0 6567 6284 2 620 928 60 0 0 chr9 4682235 4682352 -119393820 - B1_Mm SINE Alu -22 125 9 2 620 24 0 0 0 chr9 4683553 4683577 -119392595 + AT_rich Low_complexity Low_complexity 1 24 0 2 620 342 161 32 0 chr9 4683930 4684023 -119392149 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 2 620 442 353 41 55 chr9 4684032 4684323 -119391849 - B4A SINE B4 -1 291 5 2 620 26 30 0 0 chr9 4684369 4684402 -119391770 + AT_rich Low_complexity Low_complexity 1 33 0 2 620 932 290 23 122 chr9 4684962 4685380 -119390792 + MTE2a LTR MaLR 1 379 0 2 620 258 39 38 38 chr9 4685430 4685483 -119390689 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 2 620 450 79 0 0 chr9 4687750 4687813 -119388359 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 620 993 308 20 61 chr9 4688007 4688353 -119387819 + MTEb LTR MaLR 46 377 -2 2 620 180 0 0 0 chr9 4688612 4688632 -119387540 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 620 8621 185 55 11 chr9 4689080 4689699 -119386473 + Lx3C LINE L1 885 1522 -4364 2 620 2809 71 39 5 chr9 4689699 4690082 -119386090 - MTA_Mm LTR MaLR 0 396 1 2 620 7455 92 19 3 chr9 4690082 4691163 -119385009 - MTA_Mm-int LTR MaLR 0 1098 1 2 620 3069 69 5 2 chr9 4691163 4691558 -119384614 - MTA_Mm LTR MaLR 0 396 1 2 620 8621 196 55 18 chr9 4691558 4693289 -119382883 + Lx3C LINE L1 1523 3333 -2553 2 620 6683 191 28 7 chr9 4693288 4694992 -119381180 + Lx3C LINE L1 5236 6976 0 2 620 26 0 0 0 chr9 4695326 4695352 -119380820 + AT_rich Low_complexity Low_complexity 1 26 0 2 620 1342 282 44 19 chr9 4695550 4695915 -119380257 - MTE2b LTR MaLR -5 374 1 2 620 678 237 63 6 chr9 4695915 4696089 -119380083 + B2_Mm2 SINE B2 7 190 -5 2 620 301 286 55 109 chr9 4696374 4696539 -119379633 - Charlie8 DNA MER1_type -1295 1133 978 2 620 364 208 41 8 chr9 4696773 4696894 -119379278 + Lx9 LINE L1 7492 7616 -28 2 620 234 0 0 0 chr9 4696958 4696984 -119379188 + (CAAAC)n Simple_repeat Simple_repeat 3 28 0 2 620 379 355 60 16 chr9 4697858 4698041 -119378131 + B3A SINE B2 8 198 0 2 620 645 224 220 15 chr9 4699165 4699392 -119376780 - RMER4B LTR ERVK -23 588 343 2 620 242 200 0 20 chr9 4699457 4699508 -119376664 - RMER4B LTR ERVK -338 247 198 2 620 4100 172 79 3 chr9 4699509 4700242 -119375930 + Lx4A LINE L1 6264 7052 -6 2 620 195 42 0 0 chr9 4700243 4700267 -119375905 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 620 856 194 76 10 chr9 4700293 4700491 -119375681 - RMER4B LTR ERVK -374 211 1 2 620 304 262 111 32 chr9 4701822 4701948 -119374224 + Tigger7 DNA MER2_type 2314 2449 -42 2 620 704 89 33 27 chr9 4701979 4702129 -119374043 + RMER17B LTR ERVK 310 460 -498 2 620 306 0 0 0 chr9 4702130 4702164 -119374008 + (A)n Simple_repeat Simple_repeat 1 34 0 2 620 23 33 0 0 chr9 4702375 4702405 -119373767 + AT_rich Low_complexity Low_complexity 1 30 0 2 620 21 0 0 0 chr9 4702568 4702589 -119373583 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 454 305 117 20 chr9 4702881 4703129 -119373043 - B4A SINE B4 -16 276 5 2 620 265 236 0 0 chr9 4703823 4703878 -119372294 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 620 388 360 6 36 chr9 4703881 4704048 -119372124 - RSINE1 SINE B4 0 165 4 2 620 34 79 0 0 chr9 4704866 4704942 -119371230 + AT_rich Low_complexity Low_complexity 1 76 0 2 620 270 81 0 0 chr9 4705144 4705181 -119370991 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 620 2527 81 29 0 chr9 4705183 4705527 -119370645 - L1_Mus1 LINE L1 0 6567 6214 2 620 23 0 0 0 chr9 4705537 4705560 -119370612 + AT_rich Low_complexity Low_complexity 1 23 0 2 620 26298 91 10 11 chr9 4705568 4706968 -119369204 - L1_Mus2 LINE L1 0 6566 5171 2 620 4503 56 0 5 chr9 4706968 4707539 -119368633 - L1Md_F2 LINE L1 0 6582 6015 2 620 26298 119 32 26 chr9 4707539 4708300 -119367872 - L1_Mus2 LINE L1 -713 5170 4349 2 620 1011 136 0 0 chr9 4708300 4708447 -119367725 - B1_Mus1 SINE Alu 0 148 2 2 620 26298 153 55 37 chr9 4708447 4712188 -119363984 - L1_Mus2 LINE L1 -1535 4348 272 2 620 977 255 55 75 chr9 4712437 4712784 -119363388 + MTE2a LTR MaLR 40 379 0 2 620 905 191 0 0 chr9 4712876 4713023 -119363149 - B1_Mur3 SINE Alu -1 148 2 2 620 366 323 100 72 chr9 4714712 4715032 -119361140 - L2a LINE L2 -8 3418 3090 2 620 252 86 0 0 chr9 4715483 4715518 -119360654 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2 620 35 0 0 0 chr9 4718006 4718041 -119358131 + AT_rich Low_complexity Low_complexity 1 35 0 2 620 194 0 39 0 chr9 4718295 4718321 -119357851 + (CAAAAA)n Simple_repeat Simple_repeat 6 32 0 2 621 376 236 24 21 chr9 4718848 4718973 -119357199 + Charlie5 DNA MER1_type 12 138 -2486 2 621 230 262 103 35 chr9 4719034 4719208 -119356964 + Charlie5 DNA MER1_type 2268 2453 -171 2 621 315 0 0 0 chr9 4719308 4719343 -119356829 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 621 662 310 37 37 chr9 4719407 4719648 -119356524 - B4A SINE B4 -51 241 1 2 621 445 167 145 26 chr9 4720468 4720585 -119355587 + Lx9 LINE L1 7185 7315 -329 2 621 210 114 45 0 chr9 4720586 4720630 -119355542 + A-rich Low_complexity Low_complexity 5 50 0 2 621 530 161 11 0 chr9 4720631 4720724 -119355448 + Lx9 LINE L1 7313 7406 -238 2 621 435 221 23 8 chr9 4720737 4720865 -119355307 + Lx9 LINE L1 7507 7636 -8 2 621 24 0 0 0 chr9 4721464 4721488 -119354684 + AT_rich Low_complexity Low_complexity 1 24 0 2 621 441 282 63 24 chr9 4721628 4721755 -119354417 + ID_B1 SINE B4 92 223 -1 2 621 1685 191 96 30 chr9 4722443 4722821 -119353351 + L1_Mur1 LINE L1 853 1260 -5722 2 621 972 88 0 0 chr9 4722821 4722957 -119353215 + (GGAGAA)n Simple_repeat Simple_repeat 3 138 0 2 621 1685 161 54 7 chr9 4722957 4723228 -119352944 + L1_Mur1 LINE L1 1257 1541 -2371 2 621 812 105 56 70 chr9 4723229 4723372 -119352800 + RLTR22_Mus LTR ERVK 1 141 -1667 2 621 4270 161 77 92 chr9 4723374 4723567 -119352605 + L1_Mus2 LINE L1 393 550 -6088 2 621 1097 97 0 0 chr9 4723567 4723711 -119352461 + B1_Mus2 SINE Alu 1 144 -3 2 621 24626 150 41 50 chr9 4723711 4727898 -119348274 + L1_Mus2 LINE L1 551 4729 -1154 2 621 240 0 0 70 chr9 4727898 4727941 -119348231 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 621 24626 113 21 29 chr9 4727941 4728039 -119348133 + L1_Mus2 LINE L1 4730 4832 -1734 2 621 225 253 51 71 chr9 4728039 4728137 -119348035 - RMER20A LTR ERVK -236 280 185 2 621 24626 113 21 29 chr9 4728137 4729777 -119346395 + L1_Mus2 LINE L1 4833 6566 0 2 621 29 47 0 0 chr9 4729905 4729948 -119346224 + AT_rich Low_complexity Low_complexity 1 43 0 2 621 21 36 0 0 chr9 4730628 4730656 -119345516 + AT_rich Low_complexity Low_complexity 1 28 0 2 621 249 203 12 75 chr9 4731064 4731144 -119345028 - B3 SINE B2 -1 215 141 2 621 436 306 108 16 chr9 4731158 4731344 -119344828 - B3 SINE B2 -13 203 1 3 621 233 220 24 121 chr9 4731344 4731440 -119344732 - Charlie12 DNA MER1_type -1177 1696 1613 3 621 24 53 0 0 chr9 4732404 4732442 -119343730 + AT_rich Low_complexity Low_complexity 1 38 0 3 621 2476 98 31 0 chr9 4732552 4732909 -119343263 - L1_Mus3 LINE L1 -2 6636 6269 3 621 26 30 0 0 chr9 4732909 4732942 -119343230 + AT_rich Low_complexity Low_complexity 1 33 0 3 621 307 329 0 0 chr9 4732953 4733035 -119343137 + ID_B1 SINE B4 143 224 0 3 621 1369 75 5 0 chr9 4733073 4733259 -119342913 - L1_Mus1 LINE L1 0 6567 6381 3 621 22 0 0 0 chr9 4733356 4733378 -119342794 + AT_rich Low_complexity Low_complexity 1 22 0 3 621 22 56 0 0 chr9 4733524 4733560 -119342612 + AT_rich Low_complexity Low_complexity 1 36 0 3 621 21 36 0 0 chr9 4733820 4733848 -119342324 + AT_rich Low_complexity Low_complexity 1 28 0 3 621 28 29 0 0 chr9 4733890 4733925 -119342247 + AT_rich Low_complexity Low_complexity 1 35 0 3 621 988 54 0 8 chr9 4733928 4734059 -119342113 + B1_Mus1 SINE Alu 19 148 0 3 621 224 54 0 51 chr9 4734059 4734098 -119342074 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 3 621 216 158 0 0 chr9 4734592 4734630 -119341542 + (CAT)n Simple_repeat Simple_repeat 2 39 0 3 621 559 284 62 47 chr9 4734639 4734897 -119341275 - Lx9 LINE L1 -161 7483 7222 3 621 397 369 134 14 chr9 4735259 4735476 -119340696 + RMER15 LTR ERVL 291 533 -42 3 621 1121 139 71 19 chr9 4735480 4735692 -119340480 - Lx2 LINE L1 0 6997 6775 3 621 1518 113 5 1 chr9 4735692 4735933 -119340239 - Lx2 LINE L1 -354 6643 6431 3 621 375 23 0 0 chr9 4736490 4736534 -119339638 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 621 328 227 0 0 chr9 4737019 4737085 -119339087 - B1_Mur4 SINE Alu -51 99 34 3 621 255 339 0 0 chr9 4737561 4737626 -119338546 - B4A SINE B4 -6 286 222 3 621 21 36 0 0 chr9 4737966 4737994 -119338178 + AT_rich Low_complexity Low_complexity 1 28 0 3 621 21 0 0 0 chr9 4739224 4739245 -119336927 + AT_rich Low_complexity Low_complexity 1 21 0 3 621 404 200 73 0 chr9 4739728 4739977 -119336195 + (TCTA)n Simple_repeat Simple_repeat 1 267 0 3 621 448 279 73 0 chr9 4740937 4741073 -119335099 + RSINE1 SINE B4 3 148 -17 3 621 382 333 60 27 chr9 4741162 4741320 -119334852 - Lx8 LINE L1 -1388 6085 5920 3 621 516 59 0 0 chr9 4741320 4741388 -119334784 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 621 859 281 139 36 chr9 4741388 4741917 -119334255 - Lx8 LINE L1 -1554 5919 5333 3 621 23 54 0 0 chr9 4742027 4742064 -119334108 + AT_rich Low_complexity Low_complexity 1 37 0 3 621 5454 122 34 6 chr9 4743396 4744229 -119331943 - Lx LINE L1 -1 6653 5798 3 621 219 36 0 0 chr9 4744246 4744274 -119331898 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 621 3412 81 25 12 chr9 4744276 4744765 -119331407 - L1_Mus3 LINE L1 -4 6634 6140 3 621 12577 179 8 5 chr9 4744774 4746065 -119330107 - Lx8 LINE L1 -730 5147 3851 3 621 207 0 0 0 chr9 4746065 4746088 -119330084 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 621 12577 179 8 5 chr9 4746088 4747238 -119328934 - Lx8 LINE L1 -2027 3850 2701 3 621 919 110 1 4 chr9 4747239 4747393 -119328779 + B2_Mm2 SINE B2 20 170 -23 3 621 584 300 49 56 chr9 4747771 4748102 -119328070 + RLTR16 LTR ERVK 18 393 -299 3 621 414 351 8 8 chr9 4748188 4748317 -119327855 + ID_B1 SINE B4 87 215 -9 3 621 25 31 0 0 chr9 4748900 4748932 -119327240 + AT_rich Low_complexity Low_complexity 1 32 0 3 621 185 0 40 0 chr9 4749028 4749053 -119327119 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 621 210 175 136 45 chr9 4749114 4749180 -119326992 - B4 SINE B4 -219 73 2 3 621 209 390 68 0 chr9 4749332 4749450 -119326722 + MIRb SINE MIR 22 147 -121 3 621 1474 70 56 5 chr9 4749470 4749684 -119326488 + RLTR9F LTR ERVK 1 225 -190 3 621 5621 157 45 45 chr9 4749684 4751189 -119324983 + ETnERV2-int LTR ERVK 2041 4247 -2997 3 621 462 100 0 36 chr9 4751203 4751286 -119324886 + RLTR9C LTR ERVK 286 365 -28 3 621 416 308 56 99 chr9 4751273 4751525 -119324647 + B4A SINE B4 52 292 0 3 621 21 36 0 0 chr9 4751597 4751625 -119324547 + AT_rich Low_complexity Low_complexity 1 28 0 3 621 207 0 0 0 chr9 4751818 4751841 -119324331 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 621 275 315 68 116 chr9 4752515 4752705 -119323467 - B3A SINE B2 0 198 18 3 621 256 281 34 0 chr9 4753321 4753410 -119322762 - HAL1 LINE L1 -993 1514 1423 3 621 297 265 28 37 chr9 4753795 4753967 -119322205 + L1_Mm LINE L1 5252 5456 -668 3 621 384 22 0 0 chr9 4754073 4754118 -119322054 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 621 863 189 65 45 chr9 4754221 4754263 -119321909 + URR1A DNA MER1_type 24 65 -161 3 621 2166 119 6 6 chr9 4754263 4754585 -119321587 + ORR1A3 LTR MaLR 5 326 0 3 621 863 189 65 45 chr9 4754585 4754741 -119321431 + URR1A DNA MER1_type 66 226 0 3 621 344 234 80 66 chr9 4754889 4755026 -119321146 + MLT1B LTR MaLR 58 196 -194 3 621 465 319 62 34 chr9 4755765 4756070 -119320102 + MTEa LTR MaLR 10 379 0 3 621 564 367 32 36 chr9 4756451 4756728 -119319444 - B4 SINE B4 0 292 17 3 621 669 260 127 82 chr9 4756706 4756974 -119319198 + RMER15 LTR ERVL 117 396 -179 3 621 26 0 0 0 chr9 4757034 4757060 -119319112 + AT_rich Low_complexity Low_complexity 1 26 0 3 621 33 0 0 0 chr9 4757083 4757116 -119319056 + AT_rich Low_complexity Low_complexity 1 33 0 3 621 1401 252 31 0 chr9 4757669 4757990 -119318182 - Lx6 LINE L1 -3 7457 7127 3 621 407 366 38 24 chr9 4758818 4759028 -119317144 + B3A SINE B2 4 216 0 3 621 1047 308 81 26 chr9 4759759 4760753 -119315419 + L1MA5A LINE L1 4813 5864 -433 3 621 3326 73 56 0 chr9 4760768 4761218 -119314954 + MT2C_Mm LTR ERVL 1 475 0 3 621 478 319 169 18 chr9 4761354 4761680 -119314492 - MTE2b LTR MaLR -4 375 1 3 621 447 35 0 0 chr9 4761783 4761840 -119314332 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 621 25 0 0 0 chr9 4762064 4762089 -119314083 + AT_rich Low_complexity Low_complexity 1 25 0 3 621 4141 119 41 30 chr9 4763139 4763797 -119312375 + Lx2 LINE L1 6321 6985 -12 3 621 402 21 0 0 chr9 4763810 4763857 -119312315 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 621 261 0 0 0 chr9 4765246 4765275 -119310897 + (A)n Simple_repeat Simple_repeat 1 29 0 3 621 35 24 0 0 chr9 4765330 4765372 -119310800 + AT_rich Low_complexity Low_complexity 1 42 0 3 621 38026 30 1 0 chr9 4765462 4772149 -119304023 - L1Md_T LINE L1 0 6585 1 3 621 21 71 0 0 chr9 4772347 4772389 -119303783 + AT_rich Low_complexity Low_complexity 1 42 0 3 621 395 270 0 0 chr9 4772775 4772875 -119303297 + MTE2b LTR MaLR 1 100 -279 3 621 378 202 48 0 chr9 4773067 4773191 -119302981 + Lx9 LINE L1 7513 7642 -2 3 621 241 322 21 72 chr9 4773204 4773301 -119302871 + MTE2b LTR MaLR 80 171 -208 3 621 396 0 0 0 chr9 4773517 4773561 -119302611 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 621 2230 229 33 69 chr9 4773794 4774617 -119301555 + L1Md_F LINE L1 364 1252 -5475 3 621 6886 84 23 18 chr9 4774613 4775667 -119300505 + L1_Mus2 LINE L1 5508 6566 0 3 621 21 36 0 0 chr9 4777214 4777242 -119298930 + AT_rich Low_complexity Low_complexity 1 28 0 3 621 252 0 0 0 chr9 4777564 4777592 -119298580 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 3 621 2511 87 8 11 chr9 4777718 4778080 -119298092 - L1Md_F2 LINE L1 -3 6579 6219 3 621 402 305 148 7 chr9 4778106 4778248 -119297924 + RSINE1 SINE B4 2 163 -2 3 621 240 179 39 0 chr9 4778658 4778736 -119297436 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 621 704 265 7 7 chr9 4779097 4779245 -119296927 - B1_Mur4 SINE Alu -2 148 1 3 621 31 26 0 0 chr9 4779357 4779395 -119296777 + AT_rich Low_complexity Low_complexity 1 38 0 3 621 3511 75 24 6 chr9 4780562 4781029 -119295143 + MT2C_Mm LTR ERVL 1 475 0 3 621 242 275 56 0 chr9 4781456 4781616 -119294556 + (TCTA)n Simple_repeat Simple_repeat 1 169 0 3 621 187 349 79 40 chr9 4781966 4782118 -119294054 - L4 LINE RTE -184 1845 1688 3 621 261 354 35 53 chr9 4783059 4783229 -119292943 - L2b LINE L2 -223 3152 2986 3 621 227 288 247 73 chr9 4783304 4783454 -119292718 + B4 SINE B4 2 177 -115 3 621 512 296 70 41 chr9 4784378 4784692 -119291480 + L1M5 LINE L1 5327 5649 -475 3 621 206 387 93 7 chr9 4785831 4785982 -119290190 - L2b LINE L2 -1296 2123 1960 3 621 2196 113 17 31 chr9 4786336 4786693 -119289479 + L1_Mus3 LINE L1 6287 6638 0 3 621 193 262 59 59 chr9 4788282 4788367 -119287805 + L2c LINE L2 3222 3306 -81 3 621 23 33 0 0 chr9 4789166 4789196 -119286976 + AT_rich Low_complexity Low_complexity 1 30 0 3 621 237 262 14 58 chr9 4789774 4789843 -119286329 + RLTR25B LTR ERVK 433 498 -530 3 621 583 178 0 0 chr9 4789785 4789892 -119286280 + B1_Mur3 SINE Alu 43 149 0 3 621 384 292 0 19 chr9 4789944 4790052 -119286120 + PB1D10 SINE Alu 4 109 -8 3 621 240 35 0 0 chr9 4792301 4792330 -119283842 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 3 621 258 32 0 0 chr9 4792573 4792604 -119283568 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 3 621 200 167 0 20 chr9 4793623 4793672 -119282500 + GA-rich Low_complexity Low_complexity 4 51 0 3 621 513 0 0 0 chr9 4794466 4794523 -119281649 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 621 200 100 75 0 chr9 4794845 4794885 -119281287 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 621 657 0 0 0 chr9 4795374 4795447 -119280725 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 621 201 143 0 0 chr9 4796242 4796277 -119279895 + (CG)n Simple_repeat Simple_repeat 2 36 0 3 621 382 41 54 14 chr9 4796725 4796799 -119279373 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 621 581 241 81 12 chr9 4797156 4797328 -119278844 + Lx9 LINE L1 7282 7465 -179 4 621 245 109 0 21 chr9 4797334 4797381 -119278791 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 621 408 198 31 62 chr9 4797390 4797519 -119278653 + Lx9 LINE L1 7520 7644 0 4 621 21 0 0 0 chr9 4798386 4798407 -119277765 + AT_rich Low_complexity Low_complexity 1 21 0 4 621 484 206 0 16 chr9 4798689 4798817 -119277355 + (TA)n Simple_repeat Simple_repeat 1 126 0 4 621 1180 254 49 27 chr9 4799837 4800205 -119275967 + MTE2a LTR MaLR 2 377 -2 4 621 272 318 0 27 chr9 4800380 4800490 -119275682 - L1MC3 LINE L1 -948 6837 6731 4 621 222 227 0 0 chr9 4800493 4800537 -119275635 + (CATA)n Simple_repeat Simple_repeat 2 45 0 4 621 30 0 0 0 chr9 4802007 4802037 -119274135 + AT_rich Low_complexity Low_complexity 1 30 0 4 621 226 312 93 86 chr9 4802226 4802377 -119273795 - Charlie7 DNA MER1_type -674 1938 1787 4 621 362 328 111 35 chr9 4802406 4802605 -119273567 + B3A SINE B2 1 214 -2 4 621 321 324 15 101 chr9 4803066 4803265 -119272907 - B3 SINE B2 0 195 14 4 621 198 0 0 0 chr9 4804603 4804625 -119271547 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 621 243 0 0 0 chr9 4804625 4804651 -119271521 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 621 3600 226 152 16 chr9 4805124 4806096 -119270076 - Lx7 LINE L1 0 7696 6593 4 621 1725 238 28 80 chr9 4806098 4806637 -119269535 + RLTR11A LTR ERVK 1 511 -17 4 621 4118 261 34 23 chr9 4806637 4807464 -119268708 - Lx7 LINE L1 -926 6770 5939 4 621 2731 104 4 133 chr9 4807464 4807961 -119268211 - RLTR10C LTR ERVK -3 433 1 4 621 4118 218 25 18 chr9 4807961 4808745 -119267427 - Lx7 LINE L1 -1758 5938 5140 4 621 6073 201 71 23 chr9 4808740 4808896 -119267276 - Lx7 LINE L1 -2732 3148 2988 4 621 3408 28 2 0 chr9 4808896 4809291 -119266881 + MTA_Mm LTR MaLR 1 396 0 4 621 6073 201 71 23 chr9 4809291 4810796 -119265376 - Lx7 LINE L1 -2893 2987 1407 4 621 5951 104 42 1 chr9 4810804 4811660 -119264512 - RLTR13C1 LTR ERVK 0 983 93 4 621 3288 90 25 53 chr9 4811660 4812187 -119263985 + RLTR1B LTR ERV1 1 512 0 4 621 572 186 10 0 chr9 4812187 4812282 -119263890 - RLTR13C1 LTR ERVK -937 96 1 4 621 301 230 195 0 chr9 4812285 4812372 -119263800 - Lx7 LINE L1 -4477 1403 1300 4 621 477 0 0 0 chr9 4812373 4812426 -119263746 + (TTTTA)n Simple_repeat Simple_repeat 5 57 0 4 621 238 204 20 0 chr9 4812458 4812507 -119263665 + L1_Mur3 LINE L1 1051 1100 -6612 4 621 1785 249 28 16 chr9 4812506 4812999 -119263173 - Lx7 LINE L1 -6649 1079 581 4 621 387 0 0 0 chr9 4813125 4813168 -119263004 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 621 207 0 0 0 chr9 4813168 4813190 -119262982 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 621 355 339 79 0 chr9 4813237 4813364 -119262808 + B3A SINE B2 1 137 -61 4 621 12903 106 19 49 chr9 4813374 4814679 -119261493 - L1_Mus2 LINE L1 0 6566 5240 4 621 240 35 0 0 chr9 4814679 4814708 -119261464 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 621 261 0 0 0 chr9 4814710 4814739 -119261433 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 621 12903 125 15 159 chr9 4814739 4815055 -119261117 - L1_Mus2 LINE L1 -644 5239 4935 4 621 1632 21 16 0 chr9 4815055 4815245 -119260927 + B2_Mm1a SINE B2 1 193 0 4 621 12903 125 15 159 chr9 4815245 4817271 -119258901 - L1_Mus2 LINE L1 -949 4934 3340 4 621 8167 52 3 1 chr9 4817264 4818420 -119257752 - L1Md_F2 LINE L1 0 6582 5423 4 621 11695 117 2 1 chr9 4818392 4820234 -119255938 - L1_Mus2 LINE L1 -2550 3333 1490 4 621 312 27 0 0 chr9 4820268 4820305 -119255867 + (TTA)n Simple_repeat Simple_repeat 1 37 0 4 621 180 0 0 0 chr9 4820305 4820325 -119255847 + (TAG)n Simple_repeat Simple_repeat 3 22 0 4 621 652 115 2 0 chr9 4820666 4820779 -119255393 - L1_Mm LINE L1 -3619 2228 2094 4 621 400 344 89 109 chr9 4822001 4822384 -119253788 - Lx8 LINE L1 -2 7471 7151 4 621 1132 89 0 0 chr9 4822384 4822530 -119253642 - B1_Mus1 SINE Alu -2 146 1 4 621 400 344 89 109 chr9 4822530 4822690 -119253482 - Lx8 LINE L1 -323 7150 6945 4 621 360 0 0 0 chr9 4822690 4822730 -119253442 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 621 400 344 89 109 chr9 4822730 4822857 -119253315 - Lx8 LINE L1 -529 6944 6813 4 621 13811 176 44 21 chr9 4823178 4826482 -119249690 - Lx5 LINE L1 -590 6460 3044 4 621 4306 128 12 2 chr9 4826481 4827122 -119249050 - L1Md_F LINE L1 -10 5873 5226 4 621 14967 129 25 9 chr9 4827120 4827432 -119248740 - L1Md_F LINE L1 -2075 3808 3485 4 621 382 0 18 36 chr9 4827432 4827487 -119248685 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 621 14967 129 25 9 chr9 4827487 4828910 -119247262 - L1Md_F LINE L1 -2399 3484 2053 4 621 3712 73 0 0 chr9 4828910 4829390 -119246782 - L1_Mus1 LINE L1 0 6567 6088 4 621 14967 130 25 9 chr9 4829390 4830256 -119245916 - L1Md_F LINE L1 -3831 2052 1166 4 621 229 26 26 26 chr9 4830256 4830295 -119245877 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 621 1027 94 0 0 chr9 4830295 4830433 -119245739 - B1_Mm SINE Alu -9 138 1 4 621 2682 160 23 29 chr9 4830433 4830874 -119245298 - L1Md_F LINE L1 -5451 1165 726 4 621 343 267 37 30 chr9 4830875 4831010 -119245162 - L1Md_F LINE L1 -5806 810 675 4 621 382 329 0 20 chr9 4831102 4831251 -119244921 - L1VL2 LINE L1 -6095 240 95 4 621 315 0 0 0 chr9 4831260 4831295 -119244877 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 621 570 300 113 52 chr9 4831770 4832736 -119243436 - L1MA4 LINE L1 -452 5848 4818 4 621 333 286 200 6 chr9 4832904 4833282 -119242890 + L1_Mur3 LINE L1 4153 4597 -1286 4 621 478 335 58 49 chr9 4833307 4834017 -119242155 - L1MC3 LINE L1 -42 7743 7028 4 621 197 140 0 23 chr9 4835153 4835197 -119240975 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 621 23 0 0 0 chr9 4835226 4835249 -119240923 + AT_rich Low_complexity Low_complexity 1 23 0 4 621 2050 189 50 5 chr9 4835654 4836057 -119240115 - MTC LTR MaLR 0 421 1 4 621 238 279 101 61 chr9 4836197 4836296 -119239876 - B4A SINE B4 -56 236 134 4 621 6055 94 74 19 chr9 4836537 4837618 -119238554 + L1_Mus3 LINE L1 5493 6633 -5 4 621 24 67 0 0 chr9 4838410 4838455 -119237717 + AT_rich Low_complexity Low_complexity 1 45 0 4 621 441 0 0 0 chr9 4838653 4838702 -119237470 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 621 225 0 0 0 chr9 4838702 4838727 -119237445 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4 621 1515 157 27 63 chr9 4838802 4839136 -119237036 + RLTRETN_Mm LTR ERVK 1 322 0 4 621 370 362 102 20 chr9 4839443 4839787 -119236385 - Charlie7 DNA MER1_type -1427 1185 814 4 621 461 271 6 0 chr9 4840155 4840332 -119235840 + (TA)n Simple_repeat Simple_repeat 1 178 0 4 621 398 337 43 24 chr9 4840418 4840628 -119235544 - B3 SINE B2 -1 215 2 4 621 5496 153 45 18 chr9 4840666 4842007 -119234165 + Lx2 LINE L1 5266 6645 -352 4 621 1126 148 57 0 chr9 4842005 4842214 -119233958 + Lx2 LINE L1 6775 6995 -2 4 621 1253 223 88 40 chr9 4842232 4842466 -119233706 + Lx7 LINE L1 6767 7020 -676 4 621 917 119 6 0 chr9 4842466 4842626 -119233546 + (CAAAA)n Simple_repeat Simple_repeat 2 162 0 4 621 1253 223 88 40 chr9 4842626 4842665 -119233507 + Lx7 LINE L1 7021 7061 -635 4 621 3712 142 2 0 chr9 4842665 4843244 -119232928 - MT2B2 LTR ERVL 0 584 5 4 621 1253 223 88 40 chr9 4843244 4843389 -119232783 + Lx7 LINE L1 7062 7205 -491 4 621 14468 105 15 9 chr9 4843416 4845519 -119230653 - L1_Mus2 LINE L1 -8 6558 4437 4 621 1054 115 0 0 chr9 4845519 4845667 -119230505 - B1_Mus1 SINE Alu 0 148 1 4 621 14468 121 22 7 chr9 4845667 4846704 -119229468 - L1_Mus2 LINE L1 -1447 4436 3385 4 621 2236 114 220 26 chr9 4846704 4847163 -119229009 - RLTR6_Mm LTR ERV1 -70 584 37 4 621 230 218 196 56 chr9 4847165 4847272 -119228900 - RLTR6_Mm LTR ERV1 -532 122 1 4 77 64432 13 13 1 chr9 4847272 4854955 -119221217 - RLTR6-int LTR ERV1 0 7778 1 4 622 2368 113 210 27 chr9 4854955 4855436 -119220736 - RLTR6_Mm LTR ERV1 -49 605 37 4 622 12672 80 72 16 chr9 4855545 4856498 -119219674 - L1Md_A LINE L1 -2495 3388 2311 4 622 2848 73 3 3 chr9 4856498 4856882 -119219290 + L1Md_F2 LINE L1 6199 6582 0 4 622 12672 118 48 19 chr9 4856882 4859007 -119217165 - L1Md_A LINE L1 -3573 2310 198 4 622 274 262 52 52 chr9 4859035 4859188 -119216984 - IAP-d-int LTR ERVK -4149 2393 2241 4 622 358 211 61 52 chr9 4859529 4859644 -119216528 - RLTR10-int LTR ERVK -1554 433 318 4 622 572 241 183 50 chr9 4859660 4859900 -119216272 - RLTR10A LTR ERVK 0 411 140 4 622 3082 137 29 7 chr9 4859957 4860517 -119215655 - L1_Mur2 LINE L1 -2802 3075 2504 4 622 2308 215 26 52 chr9 4860519 4861094 -119215078 - L1_Mur2 LINE L1 -6098 988 429 4 622 370 395 12 6 chr9 4861594 4861762 -119214410 - B4A SINE B4 -18 274 106 4 622 3119 222 258 25 chr9 4862191 4862715 -119213457 - L1_Mur2 LINE L1 -115 5771 5234 4 622 810 134 47 0 chr9 4862715 4862864 -119213308 - L1_Mus3 LINE L1 -7 6631 6476 4 622 3906 83 2 65 chr9 4862864 4863483 -119212689 + L1_Mus3 LINE L1 5900 6479 -159 4 622 3077 149 6 14 chr9 4863483 4864000 -119212172 - Lx LINE L1 -7 6647 6135 4 622 3243 163 4 11 chr9 4864000 4864637 -119211535 - L1_Mur2 LINE L1 -1662 4224 3566 4 622 1639 124 17 33 chr9 4864657 4864958 -119211214 + Lx3B LINE L1 5784 6079 -894 4 622 3162 163 103 5 chr9 4864943 4865583 -119210589 + Lx3B LINE L1 6264 6966 -7 4 622 407 19 0 19 chr9 4865592 4865645 -119210527 + (TAA)n Simple_repeat Simple_repeat 2 53 0 4 622 297 388 79 9 chr9 4865739 4865955 -119210217 - MER21B LTR ERV1 -416 447 217 4 622 43 64 0 0 chr9 4867574 4867652 -119208520 + AT_rich Low_complexity Low_complexity 1 78 0 4 622 4237 134 6 9 chr9 4867947 4868619 -119207553 - Lx3A LINE L1 -2 6979 6310 4 622 12692 96 22 4 chr9 4868619 4869124 -119207048 - L1_Mur1 LINE L1 -511 5375 4873 4 622 531 45 0 0 chr9 4869124 4869190 -119206982 + (TTC)n Simple_repeat Simple_repeat 2 67 0 4 622 12692 96 22 4 chr9 4869190 4870694 -119205478 - L1_Mur1 LINE L1 -1014 4872 3331 4 622 4936 133 24 56 chr9 4870694 4870902 -119205270 - L1_Mur1 LINE L1 -3663 2223 2016 4 622 216 0 0 0 chr9 4870902 4870926 -119205246 + (TTCTC)n Simple_repeat Simple_repeat 1 24 0 4 622 1255 67 11 6 chr9 4870929 4871108 -119205064 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 622 4936 133 24 56 chr9 4871108 4871511 -119204661 - L1_Mur1 LINE L1 -3871 2015 1662 4 622 3404 23 99 34 chr9 4871511 4871957 -119204215 - IAPLTR2_Mm LTR ERVK 0 475 1 4 622 6004 133 96 25 chr9 4871957 4873457 -119202715 - L1_Mur1 LINE L1 -4225 1661 16 4 622 903 19 0 0 chr9 4873635 4873740 -119202432 + (TCTCC)n Simple_repeat Simple_repeat 2 106 0 4 622 7879 37 1 0 chr9 4874475 4875459 -119200713 - L1Md_A LINE L1 0 6582 5598 4 622 213 39 0 0 chr9 4875670 4875696 -119200476 + (CTGTG)n Simple_repeat Simple_repeat 5 30 0 4 622 465 84 0 0 chr9 4875734 4875805 -119200367 - L1_Mm LINE L1 -665 5218 5148 4 622 2813 88 0 0 chr9 4875806 4876224 -119199948 - L1_Mm LINE L1 -1274 4609 4192 4 622 6555 109 11 0 chr9 4876217 4877547 -119198625 + L1_Mus1 LINE L1 5226 6567 0 4 622 267 238 118 10 chr9 4878530 4878632 -119197540 + MIRb SINE MIR 141 253 -15 4 622 345 360 35 11 chr9 4878704 4878878 -119197294 + RMER30 DNA MER1_type 10 187 -15 4 622 213 39 0 0 chr9 4879579 4879605 -119196567 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 622 5182 168 58 0 chr9 4879733 4880650 -119195522 + Lx4A LINE L1 6086 7055 -3 4 622 29 0 0 0 chr9 4880651 4880680 -119195492 + AT_rich Low_complexity Low_complexity 1 29 0 4 622 929 229 7 3 chr9 4881438 4881723 -119194449 + CT-rich Low_complexity Low_complexity 1 285 0 4 622 2996 90 101 8 chr9 4881724 4881779 -119194393 - MusHAL1 LINE L1 -2 2710 2656 4 622 5182 77 3 6 chr9 4881779 4882471 -119193701 - L1Md_F2 LINE L1 -13 6569 5880 5 622 2996 90 101 8 chr9 4882471 4882939 -119193233 - MusHAL1 LINE L1 -57 2655 2140 4 622 17556 182 23 24 chr9 4882950 4883490 -119192682 + Lx2A LINE L1 1910 2458 -3428 5 622 204 40 0 0 chr9 4883490 4883515 -119192657 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 622 17556 182 23 24 chr9 4883515 4885089 -119191083 + Lx2A LINE L1 2459 4044 -1842 5 622 3407 47 0 0 chr9 4885089 4885498 -119190674 + L1_Mus1 LINE L1 6157 6565 -2 5 622 17556 182 23 24 chr9 4885498 4886769 -119189403 + Lx2A LINE L1 4045 5298 -588 5 622 1123 96 0 0 chr9 4886769 4886915 -119189257 + B1_Mus1 SINE Alu 1 146 -2 5 622 17556 135 19 7 chr9 4886915 4888616 -119187556 + Lx2A LINE L1 5299 7008 0 5 622 2693 153 9 4 chr9 4889991 4890456 -119185716 - Lx2 LINE L1 -227 5656 5190 5 622 5633 132 43 13 chr9 4890456 4891394 -119184778 + Lx2 LINE L1 5645 6610 -387 5 622 1201 142 51 19 chr9 4891393 4891609 -119184563 + Lx2 LINE L1 6775 6997 0 5 622 1598 102 8 43 chr9 4892196 4892451 -119183721 + L1_Mus2 LINE L1 6321 6566 0 5 622 3883 130 7 2 chr9 4893290 4893891 -119182281 - Lx LINE L1 -4 6650 6047 5 622 733 262 149 21 chr9 4893910 4894238 -119181934 - ORR1D2 LTR MaLR 0 370 1 5 622 986 199 176 31 chr9 4894492 4894844 -119181328 - RLTR9E LTR ERVK 0 409 7 5 622 202 216 0 0 chr9 4894845 4894882 -119181290 + GA-rich Low_complexity Low_complexity 3 39 0 5 622 2432 156 32 69 chr9 4895350 4895845 -119180327 - L1_Mur2 LINE L1 -193 5684 5208 5 622 350 226 75 85 chr9 4895905 4895920 -119180252 + RMER17D LTR ERVK 182 204 -685 5 622 504 308 0 0 chr9 4895920 4896027 -119180145 + RSINE1 SINE B4 37 143 -22 5 622 350 226 75 85 chr9 4896027 4896186 -119179986 + RMER17D LTR ERVK 205 459 -430 5 622 357 24 0 0 chr9 4896186 4896228 -119179944 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 622 365 267 75 29 chr9 4896364 4896486 -119179686 - MTEb LTR MaLR -4 375 248 5 622 3179 52 3 0 chr9 4896705 4897089 -119179083 + IAPEY_LTR LTR ERVK 1 385 0 5 622 236 77 26 0 chr9 4897317 4897356 -119178816 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 622 451 314 87 52 chr9 4897411 4897697 -119178475 - Lx8 LINE L1 -97 7376 7081 5 622 2629 263 63 41 chr9 4898075 4899692 -119176480 - Lx5 LINE L1 0 7460 5503 5 622 1765 181 28 0 chr9 4899692 4900017 -119176155 - Lx3C LINE L1 -381 6595 6262 5 622 24 0 0 0 chr9 4900018 4900042 -119176130 + AT_rich Low_complexity Low_complexity 1 24 0 5 622 620 206 57 0 chr9 4900043 4900184 -119175988 + L1_Mur2 LINE L1 4118 4266 -1611 5 622 18635 186 43 14 chr9 4900190 4902852 -119173320 - Lx3C LINE L1 -769 6231 3494 5 622 210 37 0 0 chr9 4902852 4902879 -119173293 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 622 18635 184 44 15 chr9 4902879 4903430 -119172742 - Lx3C LINE L1 -2393 3493 2918 5 622 482 0 0 17 chr9 4903430 4903489 -119172683 + (CATTT)n Simple_repeat Simple_repeat 3 60 0 5 622 18635 184 44 15 chr9 4903489 4903597 -119172575 - Lx3C LINE L1 -2969 2917 2810 5 622 267 54 0 0 chr9 4903597 4903634 -119172538 + (TTG)n Simple_repeat Simple_repeat 1 37 0 5 622 18635 184 44 15 chr9 4903634 4904059 -119172113 - Lx3C LINE L1 -3077 2809 2363 5 622 402 21 0 0 chr9 4904059 4904106 -119172066 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 5 622 18635 184 44 15 chr9 4904106 4904377 -119171795 - Lx3C LINE L1 -3524 2362 2061 5 622 309 51 0 0 chr9 4904377 4904416 -119171756 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 622 18635 184 44 15 chr9 4904416 4904714 -119171458 - Lx3C LINE L1 -3826 2060 1763 5 622 1781 173 64 2 chr9 4904706 4905114 -119171058 - Lx3C LINE L1 -5749 1235 690 5 622 2884 219 80 26 chr9 4905237 4906110 -119170062 - L1_Mur3 LINE L1 -1747 4133 3214 5 622 318 249 127 23 chr9 4906105 4906278 -119169894 + L1_Mur2 LINE L1 988 1178 -5908 5 622 6153 153 62 3 chr9 4906296 4907465 -119168707 - Lx2 LINE L1 -276 6721 5485 5 622 6507 164 35 55 chr9 4907432 4908830 -119167342 - Lx2 LINE L1 -826 5060 3854 5 622 183 42 0 0 chr9 4908830 4908854 -119167318 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 622 6507 161 40 0 chr9 4908854 4909215 -119166957 - Lx2 LINE L1 -2024 3853 3488 5 622 536 189 42 36 chr9 4909215 4909380 -119166792 + L1_Mur2 LINE L1 1431 1596 -4284 5 622 687 127 42 63 chr9 4910203 4910253 -119165919 - ORR1A4 LTR MaLR -4 325 276 5 622 1260 29 11 23 chr9 4910253 4910429 -119165743 - L1Md_F3 LINE L1 0 6584 6411 5 622 3610 132 196 6 chr9 4910439 4911118 -119165054 + RMER17D2 LTR ERVK 1 808 -1 5 622 687 127 42 63 chr9 4911118 4911199 -119164973 - ORR1A4 LTR MaLR -63 266 189 5 622 3217 224 41 27 chr9 4911176 4911350 -119164822 - RMER13B LTR ERVK -121 787 616 5 622 6075 67 18 32 chr9 4911350 4912167 -119164005 + RLTR13D1 LTR ERVK 1 806 0 5 622 3217 224 41 27 chr9 4912167 4912768 -119163404 - RMER13B LTR ERVK -293 615 1 5 622 1573 178 10 34 chr9 4912768 4913059 -119163113 - ORR1B1 LTR MaLR -110 284 1 5 622 2282 240 114 12 chr9 4913409 4913996 -119162176 - Lx6 LINE L1 -4 7456 6810 5 622 317 127 0 0 chr9 4914212 4914275 -119161897 + Lx3_Mus LINE L1 6947 7009 0 5 622 6374 89 58 9 chr9 4914488 4915549 -119160623 - L1_Mus2 LINE L1 0 6566 5459 5 622 5586 114 4 1 chr9 4915766 4916579 -119159593 - Lx3_Mus LINE L1 0 7009 6195 5 622 2666 47 0 3 chr9 4916579 4916902 -119159270 + RLTRETN_Mm LTR ERVK 1 322 0 5 622 40194 34 4 7 chr9 4916903 4921760 -119154412 + MMETn-int LTR ERVK 2 4844 0 5 622 2712 34 0 3 chr9 4921760 4922083 -119154089 + RLTRETN_Mm LTR ERVK 1 322 0 5 622 14274 199 138 8 chr9 4922086 4926422 -119149750 - Lx3_Mus LINE L1 -813 6196 1257 5 622 3982 75 2 0 chr9 4926432 4926952 -119149220 - L1_Mus1 LINE L1 0 6567 6047 5 622 3575 48 0 0 chr9 4926952 4927423 -119148749 + L1_Mus1 LINE L1 5548 6018 -549 5 622 319 266 52 0 chr9 4927420 4927574 -119148598 - MusHAL1 LINE L1 -2641 713 552 5 622 1033 159 114 27 chr9 4927601 4927821 -119148351 - Lx3_Mus LINE L1 -5 7004 6766 5 622 1572 180 66 4 chr9 4927829 4928202 -119147970 - L1VL2 LINE L1 -5562 773 66 5 622 8470 122 21 29 chr9 4928670 4930118 -119146054 - L1_Mm LINE L1 -1788 4095 2659 5 622 1982 94 3 0 chr9 4930108 4930407 -119145765 - MusHAL1 LINE L1 -2138 574 275 5 622 390 34 85 0 chr9 4931221 4931280 -119144892 - L1_Mus1 LINE L1 0 6567 6504 5 622 4253 75 7 0 chr9 4931280 4931840 -119144332 - L1_Mus1 LINE L1 -384 6183 5620 5 622 2598 89 3 0 chr9 4931835 4932182 -119143990 + L1_Mus1 LINE L1 5325 5672 -211 5 622 23 0 0 0 chr9 4932577 4932600 -119143572 + AT_rich Low_complexity Low_complexity 1 23 0 5 622 816 55 0 0 chr9 4932736 4932846 -119143326 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 622 1175 68 0 0 chr9 4932889 4933037 -119143135 + B1_Mus1 SINE Alu 1 148 0 5 622 238 250 0 0 chr9 4933043 4933111 -119143061 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 5 622 684 0 0 0 chr9 4933204 4933280 -119142892 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 5 622 7470 60 16 5 chr9 4933301 4934228 -119141944 - L1Md_F2 LINE L1 -12 6570 5636 5 622 5930 39 4 3 chr9 4934228 4934941 -119141231 + L1Md_F2 LINE L1 5865 6578 -4 5 622 7470 60 16 5 chr9 4934941 4934980 -119141192 - L1Md_F2 LINE L1 -947 5635 5593 5 622 500 57 43 0 chr9 4934979 4935049 -119141123 + L1_Mm LINE L1 5253 5325 -558 5 622 240 184 0 0 chr9 4935547 4935596 -119140576 + T-rich Low_complexity Low_complexity 1 49 0 5 622 773 174 6 31 chr9 4935903 4936063 -119140109 + URR1A DNA MER1_type 71 226 0 5 622 219 114 0 0 chr9 4936077 4936112 -119140060 + (A)n Simple_repeat Simple_repeat 1 35 0 5 622 1813 92 156 0 chr9 4936532 4936815 -119139357 - L1_Mus1 LINE L1 -4 6563 6237 5 622 23 33 0 0 chr9 4937070 4937100 -119139072 + AT_rich Low_complexity Low_complexity 1 30 0 5 622 821 249 50 20 chr9 4937328 4937529 -119138643 + B3 SINE B2 9 215 -1 5 622 560 247 174 11 chr9 4937709 4937893 -119138279 - B3 SINE B2 -2 214 1 5 622 208 240 28 28 chr9 4938049 4938156 -119138016 + A-rich Low_complexity Low_complexity 5 111 0 5 622 272 377 91 30 chr9 4939479 4939676 -119136496 + MTE-int LTR MaLR 812 1020 -560 5 622 499 169 36 0 chr9 4939784 4939867 -119136305 - RMER6C LTR ERVK -604 86 1 5 622 24 32 0 0 chr9 4940050 4940081 -119136091 + AT_rich Low_complexity Low_complexity 1 31 0 5 622 757 294 13 144 chr9 4940259 4940641 -119135531 + L1VL1 LINE L1 26 357 -6065 5 622 376 303 26 6 chr9 4940723 4940879 -119135293 + L1_Mus2 LINE L1 675 833 -5783 5 622 20513 120 22 7 chr9 4940858 4946622 -119129550 + L1_Mus2 LINE L1 725 6566 0 5 622 4069 70 4 9 chr9 4946785 4947331 -119128841 - L1Md_F2 LINE L1 0 6582 6040 5 622 2183 66 0 14 chr9 4947332 4947624 -119128548 + L1_Mm LINE L1 4718 5005 -878 5 622 204 239 0 15 chr9 4947711 4947779 -119128393 + T-rich Low_complexity Low_complexity 3 69 0 5 622 1135 124 70 0 chr9 4947781 4947966 -119128206 + L1_Mus2 LINE L1 6361 6558 -8 5 622 1625 198 86 0 chr9 4948970 4949308 -119126864 - ORR1B2 LTR MaLR 0 367 1 5 622 1602 250 67 75 chr9 4949374 4949970 -119126202 - RLTR18 LTR ERVK -2 614 24 5 622 4924 53 2 6 chr9 4950542 4951163 -119125009 - L1Md_F2 LINE L1 -4 6578 5961 5 622 354 23 0 0 chr9 4951179 4951222 -119124950 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 622 1995 171 0 3 chr9 4952512 4952863 -119123309 + L1_Mur2 LINE L1 4476 4825 -1052 5 622 34530 75 8 3 chr9 4952864 4959012 -119117160 - L1Md_F2 LINE L1 -12 6570 392 5 622 5168 185 3 7 chr9 4959012 4959987 -119116185 + L1_Mm LINE L1 4817 5787 -96 5 622 6277 188 129 12 chr9 4960048 4960927 -119115245 - L1_Mur2 LINE L1 -2849 3028 2056 5 622 201 74 0 0 chr9 4960927 4960954 -119115218 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 622 6277 182 100 18 chr9 4960954 4961746 -119114426 - L1_Mur2 LINE L1 -3822 2055 1174 5 622 189 0 0 0 chr9 4961748 4961769 -119114403 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 622 35340 69 8 3 chr9 4961809 4967908 -119108264 - L1Md_F3 LINE L1 -14 6570 483 5 622 1686 266 57 58 chr9 4967907 4968542 -119107630 - L1_Mur2 LINE L1 -5899 1187 554 5 622 285 304 12 12 chr9 4969922 4970002 -119106170 + MTEa LTR MaLR 298 377 -2 5 622 412 365 66 0 chr9 4970595 4970776 -119105396 - ID_B1 SINE B4 -2 222 30 5 622 33 25 0 0 chr9 4971251 4971291 -119104881 + AT_rich Low_complexity Low_complexity 1 40 0 5 622 744 177 30 6 chr9 4971294 4971459 -119104713 - Lx5 LINE L1 -2 7048 6880 5 622 1152 246 4 15 chr9 4971769 4972029 -119104143 + ORR1B2 LTR MaLR 1 257 -110 5 622 2971 147 112 4 chr9 4972363 4972807 -119103365 + RLTR20A2 LTR ERVK 1 479 -99 5 622 381 22 0 0 chr9 4972807 4972853 -119103319 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 622 2971 147 112 4 chr9 4972853 4972928 -119103244 + RLTR20A2 LTR ERVK 480 575 -3 5 622 262 282 38 28 chr9 4972964 4973070 -119103102 + RLTR23 LTR ERV1 316 422 -8 5 622 603 179 9 0 chr9 4973071 4973177 -119102995 + ORR1B2 LTR MaLR 253 359 -8 5 622 195 42 0 0 chr9 4973255 4973279 -119102893 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 622 737 197 40 13 chr9 4973291 4973440 -119102732 + ORR1B2-int LTR MaLR 271 423 -1086 5 622 366 66 0 32 chr9 4973445 4973508 -119102664 + ORR1B2-int LTR MaLR 588 648 -861 5 622 321 317 16 39 chr9 4973510 4973638 -119102534 + B1_Mm SINE Alu 4 128 -19 5 622 3236 179 53 21 chr9 4973645 4974309 -119101863 + ORR1B2-int LTR MaLR 825 1509 0 5 622 267 343 81 54 chr9 4974459 4974607 -119101565 - MTEb LTR MaLR -157 222 71 5 622 966 274 78 31 chr9 4975215 4975573 -119100599 + Lx9 LINE L1 6789 7163 -481 5 622 1854 233 34 7 chr9 4975589 4975999 -119100173 - MTC LTR MaLR 0 421 1 5 622 1819 276 62 61 chr9 4975999 4976781 -119099391 - MTC-int LTR MaLR 0 1258 377 5 622 1092 89 7 0 chr9 4976781 4976927 -119099245 - B1_Mus1 SINE Alu 0 148 2 5 622 1038 301 61 150 chr9 4976927 4977035 -119099137 - MTC-int LTR MaLR -722 376 288 5 622 310 196 20 0 chr9 4977500 4977551 -119098621 - MER67C LTR ERV1 -389 322 271 6 622 27 29 0 0 chr9 4977582 4977616 -119098556 + AT_rich Low_complexity Low_complexity 1 34 0 6 622 30 27 0 0 chr9 4977671 4977708 -119098464 + GC_rich Low_complexity Low_complexity 1 37 0 6 77 14471 158 40 13 chr9 4980316 4981773 -119094399 - Lx4A LINE L1 -9 7049 5588 6 623 1262 27 0 0 chr9 4981773 4981920 -119094252 - B1_Mm SINE Alu 0 147 1 6 623 14471 151 124 19 chr9 4981920 4984659 -119091513 - Lx4A LINE L1 -290 5587 2517 6 623 1681 261 172 19 chr9 4984659 4985175 -119090997 - RMER19B LTR ERVK 0 902 308 6 623 445 189 0 90 chr9 4985169 4985190 -119090982 + MT2B LTR ERVL 147 156 -445 6 623 809 55 0 0 chr9 4985190 4985300 -119090872 + B1_Mus2 SINE Alu 2 111 -36 6 623 5232 167 52 57 chr9 4985339 4985739 -119090433 - Lx4A LINE L1 -3425 2452 2057 6 623 270 0 0 0 chr9 4985739 4985769 -119090403 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 623 5232 187 52 41 chr9 4985769 4987535 -119088637 - Lx4A LINE L1 -3821 2056 379 6 623 1141 257 43 37 chr9 4987535 4987883 -119088289 - MTC-int LTR MaLR -908 350 1 5 623 1276 220 191 25 chr9 4987888 4988243 -119087929 - MTC LTR MaLR -5 416 3 5 623 236 355 16 47 chr9 4988263 4988337 -119087835 + Lx9 LINE L1 7196 7271 -373 6 623 2607 70 6 9 chr9 4988337 4988684 -119087488 - ORR1A1 LTR MaLR 0 346 1 6 623 236 355 16 47 chr9 4988684 4988736 -119087436 + Lx9 LINE L1 7272 7318 -326 6 623 3787 123 3 23 chr9 4988848 4989537 -119086635 - L1Md_F LINE L1 -2090 1727 1060 6 623 3074 81 5 0 chr9 4989537 4989933 -119086239 - MTB LTR MaLR 0 400 3 6 623 2900 197 38 96 chr9 4989933 4990809 -119085363 - L1Md_F LINE L1 -5413 1106 230 6 623 924 245 0 93 chr9 4990808 4991119 -119085053 - L1VL1 LINE L1 -5927 495 214 6 623 348 340 90 28 chr9 4991781 4991993 -119084179 + L1MDb LINE L1 666 890 -5519 6 623 340 380 13 39 chr9 4992087 4992243 -119083929 + RSINE1 SINE B4 14 165 0 6 623 433 288 19 12 chr9 4992244 4992406 -119083766 + (CATA)n Simple_repeat Simple_repeat 2 164 0 6 623 519 306 75 0 chr9 4992536 4992735 -119083437 - B3 SINE B2 0 216 3 6 623 383 281 48 71 chr9 4993091 4993444 -119082728 + L1MDb LINE L1 3076 3420 -2986 6 623 273 333 0 0 chr9 4993542 4993620 -119082552 + ID4_ SINE ID 2 79 -4 6 623 277 273 47 25 chr9 4993690 4993892 -119082280 + L1MDb LINE L1 3532 3737 -2669 6 623 497 288 34 0 chr9 4993984 4994102 -119082070 + MTEa LTR MaLR 29 150 -229 6 623 26 0 0 0 chr9 4995738 4995764 -119080408 + AT_rich Low_complexity Low_complexity 1 26 0 6 623 231 125 0 0 chr9 4996136 4996176 -119079996 + (ATG)n Simple_repeat Simple_repeat 2 41 0 6 623 231 418 41 0 chr9 4997046 4997144 -119079028 + PB1D7 SINE Alu 1 102 -18 6 623 23 0 0 0 chr9 4997879 4997902 -119078270 + AT_rich Low_complexity Low_complexity 1 23 0 6 623 1422 60 0 0 chr9 4998734 4998916 -119077256 + L1Md_F2 LINE L1 6387 6568 -14 6 623 1308 144 8 12 chr9 4999068 4999318 -119076854 + L1VL4 LINE L1 959 1209 -5877 6 623 3436 122 19 0 chr9 4999310 5000000 -119076172 + L1VL4 LINE L1 1071 1775 -4108 6 623 17412 125 17 7 chr9 5000000 5002848 -119073324 + L1_Mm LINE L1 1776 4650 -1233 1 623 3090 76 0 0 chr9 5002843 5003249 -119072923 + L1_Mus1 LINE L1 5723 6128 -439 2 623 382 160 0 17 chr9 5003308 5003381 -119072791 - RMER19A LTR ERVK -476 135 66 3 623 1781 321 83 37 chr9 5003381 5004409 -119071763 + Lx5 LINE L1 6081 7402 -58 4 623 204 40 0 0 chr9 5004412 5004437 -119071735 + (CAT)n Simple_repeat Simple_repeat 2 26 0 5 623 21 0 0 0 chr9 5004617 5004638 -119071534 + AT_rich Low_complexity Low_complexity 1 21 0 6 623 3128 186 46 29 chr9 5004706 5005337 -119070835 + Lx4B LINE L1 6413 7054 -4 7 623 205 156 0 0 chr9 5005438 5005470 -119070702 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 623 729 234 0 0 chr9 5005630 5005775 -119070397 + B1_Mur3 SINE Alu 5 149 0 9 623 414 0 0 0 chr9 5005795 5005841 -119070331 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1 623 235 71 48 0 chr9 5006203 5006245 -119069927 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 623 512 117 19 0 chr9 5006248 5006351 -119069821 + (TCTG)n Simple_repeat Simple_repeat 2 106 0 1 623 282 410 12 30 chr9 5006445 5006611 -119069561 - RSINE1 SINE B4 -1 164 2 1 623 335 331 38 0 chr9 5006800 5006957 -119069215 + L1M4 LINE L1 3631 3793 -2353 1 623 760 267 170 5 chr9 5006957 5007175 -119068997 - MTD LTR MaLR -37 382 129 1 623 5730 227 41 52 chr9 5007830 5009783 -119066389 - Lx5 LINE L1 -10 7040 5055 1 623 418 36 18 0 chr9 5009783 5009839 -119066333 + B1_Mm SINE Alu 90 146 -1 1 623 5730 227 41 52 chr9 5009839 5010400 -119065772 - Lx5 LINE L1 -10 5054 4483 1 623 784 235 53 0 chr9 5010643 5010830 -119065342 + L1_Mur2 LINE L1 567 763 -6323 1 623 2266 100 0 58 chr9 5010864 5011226 -119064946 + L1_Mus2 LINE L1 6226 6566 0 1 623 2695 174 4 20 chr9 5011230 5011739 -119064433 + L1_Mur2 LINE L1 5351 5851 -26 1 623 5297 186 69 1 chr9 5011738 5012736 -119063436 + Lx4A LINE L1 5987 7052 -6 2 623 21 36 0 0 chr9 5012736 5012764 -119063408 + AT_rich Low_complexity Low_complexity 1 28 0 2 623 201 196 0 0 chr9 5013630 5013681 -119062491 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 623 210 148 15 90 chr9 5014385 5014452 -119061720 + T-rich Low_complexity Low_complexity 2 63 0 2 623 865 179 52 10 chr9 5014803 5014995 -119061177 - Lx2B LINE L1 -589 5288 5089 2 623 5898 203 49 3 chr9 5015002 5016635 -119059537 + Lx2B LINE L1 5277 6988 -12 2 623 321 26 0 0 chr9 5016779 5016817 -119059355 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 623 261 304 29 19 chr9 5019337 5019441 -119056731 + MLT1I LTR MaLR 300 404 -7 2 623 661 294 5 85 chr9 5020181 5020404 -119055768 - B3 SINE B2 -11 205 1 2 623 208 336 39 65 chr9 5020423 5020576 -119055596 + L2a LINE L2 3225 3373 -53 2 623 189 378 24 32 chr9 5020722 5020845 -119055327 + MIRb SINE MIR 138 259 -9 2 623 1016 342 6 16 chr9 5021057 5021378 -119054794 + Lx6 LINE L1 7075 7392 -68 3 623 7220 136 11 3 chr9 5022182 5023330 -119052842 - Lx2A LINE L1 -2 7006 5851 3 623 2445 181 43 9 chr9 5023866 5024329 -119051843 + Lx3C LINE L1 6495 6973 -3 3 623 1828 227 164 14 chr9 5024800 5025313 -119050859 - RMER19B LTR ERVK -4 898 309 3 623 233 200 0 0 chr9 5026474 5026519 -119049653 + (ATG)n Simple_repeat Simple_repeat 3 47 0 3 623 27 29 0 0 chr9 5026564 5026598 -119049574 + AT_rich Low_complexity Low_complexity 1 34 0 3 623 8493 127 19 5 chr9 5026676 5028422 -119047750 + Lx3B LINE L1 5208 6970 -3 3 623 243 0 0 0 chr9 5028896 5028923 -119047249 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 623 1039 84 0 7 chr9 5028924 5029068 -119047104 - B1_Mus2 SINE Alu -3 144 2 3 623 26 0 0 0 chr9 5029167 5029193 -119046979 + AT_rich Low_complexity Low_complexity 1 26 0 3 623 234 0 0 0 chr9 5029193 5029219 -119046953 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 623 4442 127 3 0 chr9 5030582 5031282 -119044890 - L1_Mm LINE L1 -1665 4218 3517 4 623 952 182 5 0 chr9 5031290 5031477 -119044695 + L1_Mur2 LINE L1 5090 5277 -600 4 623 830 143 0 0 chr9 5031490 5031623 -119044549 - L1_Mm LINE L1 -2371 3512 3380 4 623 9343 153 15 4 chr9 5031621 5033234 -119042938 + L1_Mus3 LINE L1 4254 5892 -746 4 623 2358 81 30 6 chr9 5033234 5033571 -119042601 + IAPLTR4 LTR ERVK 1 345 0 4 623 6466 145 3 15 chr9 5033571 5034329 -119041843 + L1_Mus3 LINE L1 5893 6638 0 4 623 12280 99 24 16 chr9 5035058 5037964 -119038208 + Lx3A LINE L1 4035 6965 -16 4 623 195 42 0 0 chr9 5037979 5038003 -119038169 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 623 212 227 0 0 chr9 5038147 5038191 -119037981 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 623 838 289 85 16 chr9 5038202 5038527 -119037645 + ORR1D1 LTR MaLR 5 359 -25 4 623 43 47 0 0 chr9 5038566 5038630 -119037542 + AT_rich Low_complexity Low_complexity 1 64 0 4 623 1008 96 0 40 chr9 5039325 5039477 -119036695 + B1_Mus1 SINE Alu 3 148 0 5 623 360 0 0 0 chr9 5039481 5039521 -119036651 + (A)n Simple_repeat Simple_repeat 1 40 0 5 623 1439 239 77 52 chr9 5039752 5040521 -119035651 - Lx6 LINE L1 0 7696 6646 5 623 1950 210 43 22 chr9 5040518 5041025 -119035147 - L1_Mur3 LINE L1 -2976 2904 2387 5 623 2349 218 51 27 chr9 5041012 5041467 -119034705 - L1_Mur3 LINE L1 -6405 1323 859 5 623 1256 170 5 0 chr9 5041467 5041690 -119034482 - Lx LINE L1 -1 6653 6430 5 623 2349 218 51 27 chr9 5041690 5041857 -119034315 - L1_Mur3 LINE L1 -6870 858 686 5 623 307 306 51 22 chr9 5041986 5042008 -119034164 - Lx6 LINE L1 -21 7439 7419 5 623 777 22 0 0 chr9 5042008 5042099 -119034073 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 623 535 248 138 38 chr9 5042099 5042216 -119033956 - Lx7 LINE L1 -28 7668 7538 5 623 216 0 0 0 chr9 5042216 5042240 -119033932 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 5 623 535 248 138 38 chr9 5042240 5042361 -119033811 - Lx7 LINE L1 -159 7537 7406 5 623 1200 287 103 14 chr9 5042793 5043180 -119032992 + MTD LTR MaLR 1 407 -12 5 623 269 354 20 0 chr9 5045230 5045329 -119030843 + MLT1B LTR MaLR 287 387 -3 6 623 542 313 176 34 chr9 5045684 5045707 -119030465 - MTEa LTR MaLR -9 370 344 6 623 234 0 0 0 chr9 5045707 5045733 -119030439 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 6 623 542 313 176 34 chr9 5045733 5045860 -119030312 - MTEa LTR MaLR -36 343 187 6 623 1239 61 0 0 chr9 5045860 5046025 -119030147 + (TTCC)n Simple_repeat Simple_repeat 4 168 0 6 623 542 313 176 34 chr9 5046025 5046197 -119029975 - MTEa LTR MaLR -193 186 1 6 623 242 224 0 0 chr9 5046332 5046390 -119029782 + A-rich Low_complexity Low_complexity 1 58 0 6 623 624 277 202 29 chr9 5046430 5046806 -119029366 - RLTR45 LTR ERVK 0 482 42 6 623 7611 163 46 7 chr9 5047213 5048666 -119027506 + Lx2 LINE L1 5505 6996 -1 6 623 631 101 8 8 chr9 5049506 5049626 -119026546 - L1_Mus4 LINE L1 0 6636 6517 6 623 446 347 111 70 chr9 5049656 5050186 -119025986 + MER21B LTR ERV1 90 641 -222 6 623 292 215 101 0 chr9 5050478 5050557 -119025615 + ERVL-int LTR ERVL 4612 4698 -1059 6 623 333 351 262 3 chr9 5050714 5051020 -119025152 - L1M3 LINE L1 -1737 4409 4025 7 623 633 205 8 4 chr9 5051055 5051313 -119024859 + (TA)n Simple_repeat Simple_repeat 1 259 0 7 623 392 241 34 89 chr9 5051359 5051596 -119024576 - L1M3 LINE L1 -2193 3947 3724 7 623 377 225 50 0 chr9 5051902 5051982 -119024190 - ORR1D1 LTR MaLR -290 84 1 7 623 21 36 0 0 chr9 5052294 5052322 -119023850 + AT_rich Low_complexity Low_complexity 1 28 0 7 623 1599 194 78 5 chr9 5052442 5052826 -119023346 + RLTR31_Mm LTR ERVK 1 412 -149 7 623 818 173 6 3 chr9 5053685 5054001 -119022171 + CT-rich Low_complexity Low_complexity 1 317 0 7 623 573 300 25 6 chr9 5054249 5054410 -119021762 + Lx8 LINE L1 6991 7154 -319 7 623 637 361 50 46 chr9 5054445 5055008 -119021164 + Lx8 LINE L1 6589 7153 -320 7 623 21 71 0 0 chr9 5055039 5055081 -119021091 + AT_rich Low_complexity Low_complexity 1 42 0 7 623 6250 78 38 5 chr9 5055107 5055764 -119020408 - L1_Mus2 LINE L1 0 6566 5877 7 623 3461 13 5 2 chr9 5055764 5056159 -119020013 - MTA_Mm LTR MaLR 0 396 1 8 623 6250 137 8 87 chr9 5056159 5056827 -119019345 - L1_Mus2 LINE L1 -4 5876 5359 7 623 2476 101 8 0 chr9 5056823 5057191 -119018981 + L1_Mm LINE L1 4674 5044 -839 8 623 2509 57 2 234 chr9 5057191 5057696 -119018476 + RLTR10 LTR ERVK 1 388 -2 8 623 3015 76 14 0 chr9 5057708 5058128 -119018044 + RLTR10-int LTR ERVK 41 466 -1521 8 623 1269 120 5 0 chr9 5058128 5058328 -119017844 + L1_Mm LINE L1 5038 5238 -645 8 623 501 294 31 6 chr9 5058328 5058489 -119017683 - RMER17C LTR ERVK -243 167 3 8 623 281 295 46 62 chr9 5058513 5058643 -119017529 - RLTR15 LTR ERVK -127 232 105 8 623 819 80 0 0 chr9 5058643 5058755 -119017417 + (GAAA)n Simple_repeat Simple_repeat 1 112 0 8 623 467 265 18 0 chr9 5059297 5059463 -119016709 + L1_Mur3 LINE L1 909 1077 -6651 8 623 1416 189 0 7 chr9 5059462 5059770 -119016402 + L1_Mur3 LINE L1 1241 1546 -4331 8 623 3612 258 55 43 chr9 5059766 5061584 -119014588 - Lx6 LINE L1 0 7050 5264 8 623 1530 224 3 3 chr9 5061584 5061911 -119014261 + ORR1A2 LTR MaLR 1 327 0 8 623 3612 212 25 11 chr9 5061911 5062160 -119014012 - Lx6 LINE L1 -614 5263 5005 8 623 2852 137 89 20 chr9 5062169 5062675 -119013497 - Lx LINE L1 -2 6652 6112 8 623 3668 72 20 4 chr9 5062689 5063177 -119012995 + LTRIS2 LTR ERV1 69 564 0 9 623 1050 111 0 62 chr9 5063398 5063590 -119012582 + RLTR1B-int LTR ERV1 114 293 -3006 9 623 870 127 68 19 chr9 5063935 5064096 -119012076 + RMER16-int LTR ERVK 142 310 -5096 9 623 297 0 0 0 chr9 5064103 5064136 -119012036 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 9 623 3743 150 78 25 chr9 5064136 5064841 -119011331 + RMER16-int LTR ERVK 703 1444 -3962 9 623 2778 164 104 31 chr9 5064832 5066105 -119010067 + RLTR1B-int LTR ERV1 760 1847 -3216 9 623 5025 72 78 92 chr9 5066108 5067020 -119009152 + RLTR1B-int LTR ERV1 1657 2555 -744 9 623 1067 217 57 11 chr9 5067007 5067421 -119008751 + RLTR1B-int LTR ERV1 2669 2813 -486 9 623 940 168 62 33 chr9 5067513 5067753 -119008419 + RLTR1B-int LTR ERV1 4791 5037 -26 9 623 3688 66 20 4 chr9 5067753 5068241 -119007931 + LTRIS2 LTR ERV1 69 564 0 9 623 5209 145 8 5 chr9 5068241 5069267 -119006905 - Lx2 LINE L1 -534 6463 5432 9 623 2738 228 45 13 chr9 5069262 5070099 -119006073 - Lx6 LINE L1 -856 5021 4158 8 623 1581 226 18 14 chr9 5070090 5070583 -119005589 + L1_Mur3 LINE L1 3032 3526 -2354 9 623 7279 55 2 0 chr9 5070604 5071557 -119004615 - L1Md_F2 LINE L1 -1 6584 5630 9 623 30434 67 24 7 chr9 5071547 5076514 -118999658 - L1Md_F2 LINE L1 -752 5134 12 9 623 834 36 0 0 chr9 5076510 5076622 -118999550 - L1Md_F LINE L1 -2574 3309 3198 9 623 4776 119 20 79 chr9 5076621 5078342 -118997830 - L1Md_F LINE L1 -3934 1949 331 9 623 4707 178 30 74 chr9 5078351 5078855 -118997317 - L1_Mur2 LINE L1 -522 5355 4862 9 623 1276 173 34 34 chr9 5078855 5079118 -118997054 + Lx3A LINE L1 6710 6972 -9 1 623 4707 178 30 74 chr9 5079118 5079819 -118996353 - L1_Mur2 LINE L1 -1016 4861 4203 9 623 9040 174 37 30 chr9 5079817 5082359 -118993813 - L1VL4 LINE L1 -895 2720 60 1 623 405 0 0 0 chr9 5082401 5082446 -118993726 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 623 340 329 24 48 chr9 5082574 5082740 -118993432 + RSINE1 SINE B4 4 165 0 1 623 412 315 20 7 chr9 5082893 5083040 -118993132 + B1_Mur1 SINE Alu 1 149 0 1 623 387 0 0 0 chr9 5083046 5083089 -118993083 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 623 509 290 129 17 chr9 5083358 5083653 -118992519 + Lx9 LINE L1 7114 7441 -203 1 623 23 68 0 0 chr9 5083668 5083712 -118992460 + AT_rich Low_complexity Low_complexity 1 44 0 1 623 37 23 0 0 chr9 5084443 5084487 -118991685 + AT_rich Low_complexity Low_complexity 1 44 0 1 623 21 0 0 0 chr9 5084649 5084670 -118991502 + AT_rich Low_complexity Low_complexity 1 21 0 1 623 21 36 0 0 chr9 5085112 5085140 -118991032 + AT_rich Low_complexity Low_complexity 1 28 0 1 623 931 282 30 3 chr9 5085140 5085484 -118990688 - RMER1A Other Other -435 631 92 1 623 12217 162 37 123 chr9 5085492 5086570 -118989602 - L1_Mur1 LINE L1 -1267 4619 3509 1 623 655 61 101 0 chr9 5086570 5086669 -118989503 - L1_Mus2 LINE L1 -4 6562 6454 1 623 12217 162 37 123 chr9 5086669 5088696 -118987476 - L1_Mur1 LINE L1 -2378 3508 1828 1 623 2815 96 73 10 chr9 5088696 5089106 -118987066 - RLTR9B LTR ERVK -1 436 1 1 623 12217 162 37 123 chr9 5089106 5089546 -118986626 - L1_Mur1 LINE L1 -4059 1827 1379 1 623 925 44 0 0 chr9 5089547 5089661 -118986511 - B1_Mus1 SINE Alu -5 143 30 1 623 233 225 171 51 chr9 5089586 5089703 -118986469 - RLTR25A LTR ERVK -521 582 452 1 623 3226 172 73 10 chr9 5089703 5090430 -118985742 - L1_Mur1 LINE L1 -5643 1341 569 1 623 420 20 0 0 chr9 5090443 5090492 -118985680 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 1 623 1091 173 88 0 chr9 5090495 5090721 -118985451 - Lx3C LINE L1 -8 6968 6723 1 623 235 0 47 70 chr9 5091163 5091206 -118984966 + (TTTTTA)n Simple_repeat Simple_repeat 2 43 0 1 623 451 323 91 33 chr9 5091885 5092128 -118984044 + L1MB5 LINE L1 5841 6097 -77 1 623 408 155 0 0 chr9 5092880 5092951 -118983221 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 623 694 329 123 56 chr9 5093240 5093904 -118982268 + L1M2 LINE L1 3961 4692 -1454 1 623 1256 90 0 11 chr9 5093904 5094083 -118982089 + L1_Mus2 LINE L1 6390 6566 0 1 623 361 329 121 63 chr9 5094083 5094099 -118982073 + L1M2 LINE L1 4693 4707 -1439 1 623 318 346 72 53 chr9 5094101 5094683 -118981489 + L1M2 LINE L1 4858 5450 -721 1 623 5016 105 21 4 chr9 5094713 5095505 -118980667 - L1_Mm LINE L1 -821 5062 4257 1 623 5583 83 1 1 chr9 5095506 5096240 -118979932 + L1_Mus1 LINE L1 5828 6561 -6 1 623 192 77 0 0 chr9 5096240 5096266 -118979906 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1 623 3144 76 17 15 chr9 5096279 5096722 -118979450 - L1_Mur1 LINE L1 -582 5304 4856 1 623 2533 84 3 34 chr9 5096722 5097079 -118979093 - ORR1A1 LTR MaLR 0 346 1 1 623 3144 76 17 15 chr9 5097079 5097116 -118979056 - L1_Mur1 LINE L1 -1031 4855 4823 1 623 225 0 0 0 chr9 5097129 5097154 -118979018 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 623 23 0 0 0 chr9 5097190 5097213 -118978959 + AT_rich Low_complexity Low_complexity 1 23 0 1 623 23218 127 20 16 chr9 5097357 5102255 -118973917 - L1_Mus3 LINE L1 0 6638 1718 1 623 5452 120 8 24 chr9 5102243 5103151 -118973021 - L1VL1 LINE L1 -5337 1085 193 1 623 1201 121 0 192 chr9 5103150 5103467 -118972705 - L1_Mur1 LINE L1 -1067 4819 4564 1 623 4126 125 2 2 chr9 5103469 5104085 -118972087 + Lx3A LINE L1 6360 6975 -6 1 623 209 108 0 26 chr9 5104581 5104619 -118971553 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 623 450 0 0 0 chr9 5104857 5104907 -118971265 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 623 372 119 0 0 chr9 5105034 5105093 -118971079 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 623 7399 158 36 9 chr9 5105106 5107133 -118969039 - Lx2 LINE L1 -16 6981 4895 1 623 4151 140 16 20 chr9 5107129 5107918 -118968254 + L1_Mur2 LINE L1 3403 4188 -1689 1 623 288 0 0 0 chr9 5107918 5107950 -118968222 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 623 1188 160 0 0 chr9 5107950 5108162 -118968010 + L1_Mm LINE L1 4701 4912 -971 1 623 543 341 36 41 chr9 5108303 5108523 -118967649 - ID_B1 SINE B4 0 224 6 1 623 399 346 46 16 chr9 5108653 5108847 -118967325 - B3 SINE B2 0 216 17 1 623 198 214 36 0 chr9 5109809 5109893 -118966279 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 623 2865 206 51 5 chr9 5110244 5110868 -118965304 + Lx3C LINE L1 6317 6969 -7 1 623 21 0 0 0 chr9 5110977 5110998 -118965174 + AT_rich Low_complexity Low_complexity 1 21 0 1 77 1361 355 41 14 chr9 5111789 5112477 -118963695 + Lx8 LINE L1 6706 7411 -62 1 624 1595 249 8 80 chr9 5112704 5113215 -118962957 + Lx3C LINE L1 6501 6974 -2 1 624 818 280 30 44 chr9 5114350 5114712 -118961460 - L1_Rod LINE L1 -1828 4019 3663 1 624 21 36 0 0 chr9 5114915 5114943 -118961229 + AT_rich Low_complexity Low_complexity 1 28 0 1 624 26 64 0 0 chr9 5115175 5115222 -118960950 + AT_rich Low_complexity Low_complexity 1 47 0 1 624 215 224 0 49 chr9 5115261 5115322 -118960850 + CT-rich Low_complexity Low_complexity 3 60 0 1 624 253 348 53 32 chr9 5115330 5115517 -118960655 - Lx8 LINE L1 -143 7330 7140 1 624 4842 67 9 3 chr9 5115742 5116374 -118959798 + L1_Mus1 LINE L1 5926 6561 -6 1 624 204 40 0 0 chr9 5116375 5116400 -118959772 + (GAA)n Simple_repeat Simple_repeat 1 25 0 1 624 3620 125 14 4 chr9 5116400 5116954 -118959218 + Lx3A LINE L1 6420 6979 -2 1 624 423 0 0 0 chr9 5116959 5117006 -118959166 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 624 319 135 0 19 chr9 5117118 5117158 -118959014 + Lx3_Mus LINE L1 6823 6862 -147 1 624 1548 0 0 0 chr9 5117158 5117330 -118958842 + (TA)n Simple_repeat Simple_repeat 1 172 0 1 624 319 135 0 19 chr9 5117330 5117342 -118958830 + Lx3_Mus LINE L1 6863 6874 -135 1 624 4343 121 11 4 chr9 5117353 5118226 -118957946 + Lx3A LINE L1 5409 6287 -694 1 624 291 349 135 17 chr9 5118828 5119006 -118957166 + MLT1A LTR MaLR 175 373 -1 1 624 743 256 74 163 chr9 5120148 5120554 -118955618 + ORR1D1 LTR MaLR 3 372 -2 1 624 3067 245 45 33 chr9 5121025 5122163 -118954009 + RMER1B Other Other 46 1065 -1 1 624 262 362 73 45 chr9 5122216 5122326 -118953846 - PB1D10 SINE Alu -2 115 3 1 624 229 259 81 175 chr9 5122346 5122667 -118953505 + L1MC LINE L1 4307 4609 -1537 1 624 1119 70 0 0 chr9 5122667 5122809 -118953363 + B1_Mus1 SINE Alu 2 143 -5 1 624 229 259 81 175 chr9 5122809 5122922 -118953250 + L1MC LINE L1 4610 4700 -1446 1 624 181 305 50 50 chr9 5123067 5123167 -118953005 + L3 LINE CR1 1008 1107 -3382 1 624 400 274 15 121 chr9 5124254 5124453 -118951719 + Lx8 LINE L1 6100 6277 -1196 1 624 279 54 0 0 chr9 5125078 5125115 -118951057 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 624 2967 214 35 25 chr9 5125118 5126183 -118949989 + L1_Mur2 LINE L1 904 2022 -3855 1 624 3766 176 36 10 chr9 5126182 5126912 -118949260 - L1_Mur2 LINE L1 -42 5835 5087 1 624 918 221 104 79 chr9 5126912 5127266 -118948906 + RLTR9A LTR ERVK 6 368 0 1 624 326 23 23 0 chr9 5127698 5127741 -118948431 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 624 207 0 0 0 chr9 5127786 5127809 -118948363 + (A)n Simple_repeat Simple_repeat 1 23 0 1 624 4016 167 65 37 chr9 5127809 5128919 -118947253 + RMER16-int LTR ERVK 789 2191 -5215 1 624 257 304 29 0 chr9 5129021 5129123 -118947049 + ETnERV2-int LTR ERVK 1415 1519 -1795 1 624 762 228 44 117 chr9 5129124 5129422 -118946750 + ETnERV2-int LTR ERVK 2279 2554 -4852 1 624 12448 145 54 18 chr9 5129604 5131978 -118944194 + RMER16-int LTR ERVK 1566 6204 -1202 1 624 642 240 149 76 chr9 5132485 5132828 -118943344 + RLTR9A LTR ERVK 1 368 0 1 624 7623 183 47 6 chr9 5132829 5134439 -118941733 - L1_Mur2 LINE L1 -781 5096 3421 1 624 1198 132 34 13 chr9 5134435 5134673 -118941499 - L1VL4 LINE L1 -1995 1564 1322 1 624 31618 99 10 17 chr9 5134699 5140919 -118935253 - L1Md_F2 LINE L1 0 6582 402 1 624 2250 202 48 19 chr9 5140917 5141953 -118934219 - L1VL4 LINE L1 -2224 1335 277 1 624 821 74 16 0 chr9 5142018 5142139 -118934033 + (TTTCC)n Simple_repeat Simple_repeat 2 124 0 1 624 7013 201 31 15 chr9 5142148 5142997 -118933175 - L1_Mur2 LINE L1 -2962 2915 2065 1 624 207 0 0 0 chr9 5142997 5143020 -118933152 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1 624 7013 207 38 13 chr9 5143020 5144120 -118932052 - L1_Mur2 LINE L1 -3813 2064 919 1 624 3864 168 128 77 chr9 5144126 5145099 -118931073 + RLTR13D2 LTR ERVK 1 1023 0 1 624 860 201 11 5 chr9 5145447 5145637 -118930535 + L1_Mur2 LINE L1 4420 4610 -1267 1 624 214 143 48 0 chr9 5146020 5146062 -118930110 + CT-rich Low_complexity Low_complexity 2 45 0 1 624 2225 125 11 3 chr9 5146273 5146633 -118929539 - L1_Mus3 LINE L1 -12 6626 6264 1 624 294 289 0 13 chr9 5146652 5146729 -118929443 + RMER20B LTR ERVK 482 557 -70 1 624 2576 191 33 58 chr9 5146732 5147939 -118928233 + L1_Mus2 LINE L1 378 1301 -5356 1 624 24042 140 3 7 chr9 5147923 5152796 -118923376 + L1_Mus2 LINE L1 1714 6565 -1 1 624 588 101 0 0 chr9 5152970 5153059 -118923113 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 1 624 303 236 192 2 chr9 5153119 5153254 -118922918 - L1MC LINE L1 -2338 3808 3662 1 624 337 326 105 29 chr9 5153274 5153618 -118922554 - L1M4 LINE L1 -2521 3625 3256 1 624 24 67 0 0 chr9 5153845 5153890 -118922282 + AT_rich Low_complexity Low_complexity 1 45 0 1 624 330 87 0 0 chr9 5153899 5153945 -118922227 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 624 181 119 23 23 chr9 5154104 5154147 -118922025 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 624 23 0 0 0 chr9 5154795 5154818 -118921354 + AT_rich Low_complexity Low_complexity 1 23 0 1 624 225 0 0 0 chr9 5156224 5156249 -118919923 + (T)n Simple_repeat Simple_repeat 1 25 0 1 624 185 139 23 0 chr9 5156353 5156396 -118919776 + T-rich Low_complexity Low_complexity 2 45 0 1 624 6985 132 9 22 chr9 5156463 5157639 -118918533 + Lx3C LINE L1 5807 6967 -9 1 624 23 0 0 0 chr9 5157641 5157664 -118918508 + AT_rich Low_complexity Low_complexity 1 23 0 1 624 1106 55 7 27 chr9 5158174 5158323 -118917849 + B1_Mus1 SINE Alu 3 148 0 2 624 208 135 0 0 chr9 5158323 5158360 -118917812 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 2 624 35 41 0 0 chr9 5158641 5158690 -118917482 + AT_rich Low_complexity Low_complexity 1 49 0 2 624 257 194 128 77 chr9 5158692 5158770 -118917402 - PB1D7 SINE Alu -8 112 31 2 624 29 70 0 0 chr9 5159099 5159156 -118917016 + AT_rich Low_complexity Low_complexity 1 57 0 2 624 424 316 197 14 chr9 5159977 5160195 -118915977 - MLT1B LTR MaLR -24 366 109 2 624 738 229 25 54 chr9 5160200 5160440 -118915732 - RMER1C Other Other -1 1341 1109 2 624 180 204 111 22 chr9 5160855 5160900 -118915272 - L2 LINE L2 -2738 681 633 2 624 638 75 0 11 chr9 5161879 5161973 -118914199 + (TC)n Simple_repeat Simple_repeat 2 94 0 2 624 271 288 12 0 chr9 5161974 5162054 -118914118 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 624 273 57 0 0 chr9 5162055 5162090 -118914082 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 624 771 129 0 0 chr9 5162310 5162465 -118913707 + (CA)n Simple_repeat Simple_repeat 2 156 0 2 624 324 0 0 0 chr9 5162608 5162644 -118913528 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 624 473 286 18 6 chr9 5163882 5164051 -118912121 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 624 372 283 35 0 chr9 5164182 5164295 -118911877 + B1_Mur3 SINE Alu 12 128 -21 2 624 3381 30 2 0 chr9 5166357 5166752 -118909420 + MTA_Mm LTR MaLR 1 396 0 2 624 7560 191 28 45 chr9 5166924 5170065 -118906107 - Lx2B LINE L1 -2 6998 3940 2 624 307 354 20 36 chr9 5170241 5170493 -118905679 - RLTR6-int LTR ERV1 -6876 902 655 2 624 2208 131 141 25 chr9 5171379 5171811 -118904361 - RLTR45 LTR ERVK 0 482 1 2 624 1976 150 46 0 chr9 5172193 5172539 -118903633 - RLTR31A_Mm LTR ERVK -216 368 7 2 624 10265 161 40 15 chr9 5172648 5175271 -118900901 - L1VL4 LINE L1 -369 3190 500 2 624 440 188 68 34 chr9 5175546 5175634 -118900538 + RLTR13D1 LTR ERVK 729 806 0 2 624 299 302 0 0 chr9 5175689 5175775 -118900397 + CT-rich Low_complexity Low_complexity 2 87 0 2 624 391 290 109 22 chr9 5176156 5176385 -118899787 - MER45B DNA Tip100 -178 862 614 2 624 394 181 12 0 chr9 5176888 5176971 -118899201 + Lx5 LINE L1 6335 6418 -632 2 624 347 400 75 9 chr9 5177058 5177270 -118898902 - MER45B DNA Tip100 -814 226 1 2 624 21 89 0 0 chr9 5177458 5177514 -118898658 + AT_rich Low_complexity Low_complexity 1 56 0 2 624 21 36 0 0 chr9 5177568 5177596 -118898576 + AT_rich Low_complexity Low_complexity 1 28 0 2 624 225 94 0 0 chr9 5177715 5177747 -118898425 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 2 624 1051 110 7 0 chr9 5177764 5177910 -118898262 + B1_Mus1 SINE Alu 2 148 0 2 624 357 62 0 0 chr9 5177912 5177960 -118898212 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 624 339 96 0 0 chr9 5178836 5178888 -118897284 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 624 248 70 0 23 chr9 5179030 5179074 -118897098 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 624 5709 5 0 0 chr9 5179263 5179893 -118896279 - L1Md_A LINE L1 0 6582 5953 2 624 378 342 17 17 chr9 5179897 5180013 -118896159 + B3A SINE B2 68 183 -15 2 624 4997 92 12 7 chr9 5180028 5180759 -118895413 + Lx LINE L1 5724 6458 -196 2 624 2649 52 3 0 chr9 5180759 5181084 -118895088 + IAPLTR3 LTR ERVK 1 326 0 2 624 22 0 0 0 chr9 5181809 5181831 -118894341 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 2440 145 22 5 chr9 5181959 5182403 -118893769 - L1_Mm LINE L1 -492 5391 4940 2 624 2409 102 3 0 chr9 5182402 5182774 -118893398 + L1_Mus3 LINE L1 5619 5991 -647 2 624 1031 165 0 5 chr9 5182941 5183130 -118893042 - L1VL2 LINE L1 -6063 272 85 2 624 491 31 0 0 chr9 5183162 5183226 -118892946 - B1_Mm SINE Alu 0 147 84 2 624 416 272 57 31 chr9 5183295 5183526 -118892646 - L1MDa LINE L1 -5252 1288 1053 2 624 327 65 0 0 chr9 5183737 5183783 -118892389 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 2 624 636 132 19 9 chr9 5183785 5183892 -118892280 - PB1D9 SINE Alu -10 110 3 2 624 3797 202 66 2 chr9 5183924 5184746 -118891426 - Lx4A LINE L1 0 7058 6185 2 624 4460 89 8 23 chr9 5184910 5185556 -118890616 - L1_Mus1 LINE L1 -2 6565 5930 2 624 274 358 118 42 chr9 5185561 5185994 -118890178 - MLT1D LTR MaLR 0 467 22 2 624 294 309 69 54 chr9 5186101 5186121 -118890051 + B4 SINE B4 67 88 -204 2 624 595 252 13 0 chr9 5186121 5186257 -118889915 + B1_Mm SINE Alu 2 144 -6 2 624 22 0 0 0 chr9 5187280 5187302 -118888870 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 260 362 0 45 chr9 5187359 5187492 -118888680 + ID_B1 SINE B4 98 224 0 2 624 309 109 0 0 chr9 5187492 5187547 -118888625 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 624 598 363 29 25 chr9 5187571 5187851 -118888321 + B4A SINE B4 6 286 -6 2 624 1689 212 58 14 chr9 5187861 5188220 -118887952 - ORR1C1 LTR MaLR -3 375 1 2 624 24 0 0 0 chr9 5188275 5188299 -118887873 + AT_rich Low_complexity Low_complexity 1 24 0 2 624 641 13 13 0 chr9 5188480 5188558 -118887614 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 624 21 0 0 0 chr9 5189418 5189439 -118886733 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 357 82 0 0 chr9 5189793 5189842 -118886330 + (T)n Simple_repeat Simple_repeat 1 49 0 2 624 995 82 0 0 chr9 5189842 5189977 -118886195 - B1_Mus1 SINE Alu 0 148 14 2 624 518 237 53 80 chr9 5189847 5189998 -118886174 - B4 SINE B4 -71 221 75 2 624 401 399 68 34 chr9 5190985 5191309 -118884863 + L1MDa LINE L1 212 546 -6087 2 624 436 228 49 110 chr9 5191481 5191644 -118884528 + MT2B LTR ERVL 124 276 -325 2 624 474 221 58 97 chr9 5191508 5191537 -118884635 + B4 SINE B4 70 218 -74 2 624 1023 39 0 23 chr9 5191537 5191663 -118884509 + B1_Mm SINE Alu 14 137 -10 2 624 207 88 0 0 chr9 5191663 5191697 -118884475 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 624 189 74 0 0 chr9 5191834 5191861 -118884311 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 2 624 539 276 5 19 chr9 5191927 5192134 -118884038 + L1MDa LINE L1 1053 1256 -5377 2 624 1808 198 44 3 chr9 5192546 5192890 -118883282 - ORR1B1 LTR MaLR -2 392 35 2 624 3301 189 53 6 chr9 5192916 5193561 -118882611 - ORR1B1-int LTR MaLR 0 1509 835 2 624 734 214 84 0 chr9 5193556 5193710 -118882462 - ORR1B1 LTR MaLR -220 174 8 2 624 556 94 9 45 chr9 5194247 5194358 -118881814 + Lx LINE L1 6545 6651 -3 2 624 287 45 45 0 chr9 5194383 5194427 -118881745 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 624 1345 140 9 0 chr9 5195654 5195875 -118880297 - Lx2 LINE L1 0 6997 6775 2 624 6170 131 9 1 chr9 5195875 5196868 -118879304 - Lx2 LINE L1 -354 6643 5643 2 624 2235 135 5 25 chr9 5196866 5197260 -118878912 + Lx2 LINE L1 5195 5580 -303 2 624 3657 127 21 107 chr9 5197317 5198139 -118878033 + RMER17A LTR ERVK 1 751 0 2 624 24 53 0 0 chr9 5198320 5198358 -118877814 + AT_rich Low_complexity Low_complexity 1 38 0 2 624 1256 20 0 0 chr9 5198449 5198595 -118877577 + B1_Mus2 SINE Alu 2 147 0 2 624 4709 265 34 18 chr9 5198691 5200028 -118876144 - Lx5 LINE L1 -7 7043 5686 2 624 2857 196 180 2 chr9 5200034 5200852 -118875320 - Lx5 LINE L1 -635 5242 4280 2 624 2245 198 67 4 chr9 5200867 5201390 -118874782 - Lx4A LINE L1 -2 7056 6501 2 624 2999 195 72 16 chr9 5201439 5201882 -118874290 - Lx5 LINE L1 -1583 4294 3808 2 624 1424 161 93 148 chr9 5201882 5202321 -118873851 + RLTR9F LTR ERVK 1 415 0 2 624 2999 195 72 16 chr9 5202321 5202629 -118873543 - Lx5 LINE L1 -2070 3807 3501 2 624 233 262 24 176 chr9 5202629 5202754 -118873418 - RMER19C LTR ERVK -273 338 233 2 624 1183 181 131 0 chr9 5202762 5202999 -118873173 - RMER19C LTR ERVK -343 268 1 2 624 4117 224 12 18 chr9 5203003 5204088 -118872084 - Lx5 LINE L1 -2599 3278 2201 2 624 1789 184 348 2 chr9 5204104 5204676 -118871496 + L1_Mur2 LINE L1 5019 5788 -89 2 624 424 111 0 0 chr9 5204667 5204730 -118871442 + Lx LINE L1 5642 5704 -1296 2 624 2676 121 66 5 chr9 5204730 5205170 -118871002 + Lx LINE L1 6175 6641 -13 2 624 935 236 96 81 chr9 5205188 5205584 -118870588 - RMER16 LTR ERVK -19 514 113 2 624 4160 189 119 32 chr9 5205634 5206963 -118869209 + Lx5 LINE L1 5443 6912 -138 2 624 360 0 0 0 chr9 5206963 5207003 -118869169 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2 624 294 29 0 0 chr9 5207003 5207037 -118869135 + (ATG)n Simple_repeat Simple_repeat 2 36 0 2 624 736 265 99 49 chr9 5207037 5207162 -118869010 + Lx5 LINE L1 6913 7057 -1 2 624 414 0 0 0 chr9 5207476 5207522 -118868650 + (CTA)n Simple_repeat Simple_repeat 3 48 0 2 624 483 358 16 38 chr9 5207599 5207782 -118868390 + B4A SINE B4 2 180 -112 2 624 2324 146 33 97 chr9 5207810 5208325 -118867847 + RLTR45 LTR ERVK 1 482 0 2 624 4650 67 28 26 chr9 5208325 5209016 -118867156 + RLTR45-int LTR ERVK 1 692 -6552 2 624 1725 70 0 0 chr9 5209361 5209591 -118866581 + RLTR45-int LTR ERVK 681 910 -6334 2 624 710 170 34 7 chr9 5209708 5209856 -118866316 + RLTR45-int LTR ERVK 913 1064 -6180 2 624 335 299 54 54 chr9 5210150 5210447 -118865725 + SRV_MM-int LTR ERVK 2376 2956 -5261 2 624 2521 53 0 0 chr9 5210687 5211007 -118865165 + RLTR45-int LTR ERVK 1329 1648 -5596 2 624 419 319 0 13 chr9 5211352 5211377 -118864795 + RNERVK23-int LTR ERVK 7388 7479 -738 2 624 434 261 0 0 chr9 5211377 5211496 -118864676 + MuRRS4-int LTR ERV1 4550 4668 -395 2 624 419 319 0 13 chr9 5211496 5211511 -118864661 + RNERVK23-int LTR ERVK 7480 7544 -673 2 624 235 296 28 113 chr9 5211513 5211654 -118864518 - LTR50 LTR ERVL -531 264 136 2 624 6607 54 11 0 chr9 5211654 5212489 -118863683 + RLTR45-int LTR ERVK 6401 7244 0 2 624 1123 195 115 67 chr9 5212489 5212885 -118863287 + RLTR45 LTR ERVK 1 480 -2 2 624 226 0 29 29 chr9 5212904 5212939 -118863233 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 624 987 126 0 20 chr9 5212939 5213076 -118863096 - B1_Mus1 SINE Alu -10 138 2 2 624 261 0 0 0 chr9 5213227 5213256 -118862916 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 624 3352 148 5 11 chr9 5213443 5214056 -118862116 - L1_Mur1 LINE L1 -722 5164 4556 2 624 2667 157 88 37 chr9 5214053 5214162 -118862010 + L1_Mur1 LINE L1 5169 5282 -604 2 624 302 0 26 0 chr9 5214162 5214200 -118861972 + (CTAA)n Simple_repeat Simple_repeat 3 41 0 2 624 2667 157 88 37 chr9 5214200 5214691 -118861481 + L1_Mur1 LINE L1 5283 5799 -87 2 624 4981 45 1 4 chr9 5214699 5215383 -118860789 + L1Md_F LINE L1 618 1302 -5422 2 624 3584 63 2 9 chr9 5215397 5215863 -118860309 + L1Md_F2 LINE L1 6120 6582 0 2 624 3067 215 107 54 chr9 5215900 5217031 -118859141 + Lx3C LINE L1 5783 6973 -3 2 624 27 0 0 0 chr9 5217037 5217064 -118859108 + AT_rich Low_complexity Low_complexity 1 27 0 2 624 601 338 41 5 chr9 5217326 5217695 -118858477 + Lx9 LINE L1 7108 7489 -155 3 624 5082 203 77 53 chr9 5217982 5219158 -118857014 - Lx5 LINE L1 -5 7045 5784 3 624 594 84 0 12 chr9 5219158 5219242 -118856930 - BC1_Mm scRNA scRNA -69 83 1 3 624 5082 203 77 53 chr9 5219242 5219834 -118856338 - Lx5 LINE L1 -5 5783 5147 3 624 1097 93 12 0 chr9 5219863 5220025 -118856147 - L1_Mus2 LINE L1 -1 6565 6402 3 624 13626 92 17 11 chr9 5220027 5220890 -118855282 - L1_Mus2 LINE L1 -440 6126 5293 3 624 1121 89 0 0 chr9 5220890 5221036 -118855136 - B1_Mm SINE Alu -1 146 1 3 624 13626 123 37 24 chr9 5221036 5221910 -118854262 - L1_Mus2 LINE L1 -591 5292 4424 3 624 4261 56 33 0 chr9 5221910 5222449 -118853723 - L1Md_F3 LINE L1 -16 6568 6012 3 624 20433 126 22 10 chr9 5222449 5224337 -118851835 - L1_Mus2 LINE L1 -1460 4423 2494 3 624 2503 96 3 0 chr9 5224337 5224682 -118851490 - ORR1A1 LTR MaLR 0 346 1 3 624 11268 95 6 110 chr9 5224682 5226438 -118849734 - ORR1A1-int LTR MaLR 0 1792 231 3 624 250 26 0 49 chr9 5226438 5226479 -118849693 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 624 1061 86 0 0 chr9 5226479 5226618 -118849554 - B1_Mus1 SINE Alu -9 139 1 3 624 11268 95 6 110 chr9 5226618 5226860 -118849312 - ORR1A1-int LTR MaLR -1562 230 2 3 624 2793 61 0 0 chr9 5226860 5227206 -118848966 - ORR1A1 LTR MaLR 0 346 1 3 624 20433 126 22 10 chr9 5227206 5228309 -118847863 - L1_Mus2 LINE L1 -3390 2493 1392 3 624 8809 208 59 42 chr9 5228297 5231237 -118844935 - Lx5 LINE L1 -1928 3949 895 3 624 2917 49 11 3 chr9 5231291 5231640 -118844532 - IAPEY2_LTR LTR ERVK -3 354 3 3 624 195 100 0 0 chr9 5233119 5233149 -118843023 + (GAA)n Simple_repeat Simple_repeat 3 32 0 3 624 1124 114 6 0 chr9 5233149 5233325 -118842847 + (GGA)n Simple_repeat Simple_repeat 3 179 0 3 624 21 36 0 0 chr9 5233558 5233586 -118842586 + AT_rich Low_complexity Low_complexity 1 28 0 3 624 21 0 0 0 chr9 5233654 5233675 -118842497 + AT_rich Low_complexity Low_complexity 1 21 0 3 624 23 0 0 0 chr9 5234078 5234101 -118842071 + AT_rich Low_complexity Low_complexity 1 23 0 3 624 789 279 20 131 chr9 5234115 5234420 -118841752 - RLTR26 LTR ERVK -2 640 370 3 624 958 61 23 0 chr9 5234439 5234570 -118841602 + B1_Mm SINE Alu 14 147 0 3 624 369 259 25 49 chr9 5234465 5234572 -118841600 + RLTR25B LTR ERVK 441 542 -486 3 624 359 68 17 0 chr9 5234572 5234631 -118841541 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 3 624 369 259 25 49 chr9 5234631 5234645 -118841527 + RLTR25B LTR ERVK 543 558 -470 3 624 262 222 0 18 chr9 5234633 5234684 -118841488 - RLTR26 LTR ERVK -256 386 337 3 624 946 252 54 86 chr9 5234684 5235143 -118841029 + BGLII_B LTR ERVK 1 441 -120 3 624 941 233 52 35 chr9 5235323 5235624 -118840548 - RLTR26 LTR ERVK -298 344 1 3 624 189 0 0 0 chr9 5235749 5235770 -118840402 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 624 948 303 91 98 chr9 5235770 5236089 -118840083 + RMER20B LTR ERVK 3 341 -286 3 624 510 46 0 0 chr9 5236089 5236154 -118840018 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 624 948 303 91 98 chr9 5236154 5236438 -118839734 + RMER20B LTR ERVK 342 602 -25 3 624 2106 187 43 13 chr9 5236492 5236887 -118839285 + MTC LTR MaLR 1 407 -14 3 624 405 356 36 33 chr9 5236896 5237198 -118838974 - Lx9 LINE L1 -222 7422 7120 3 9 26907 107 80 18 chr9 5237969 5243924 -118832248 - L1Md_F2 LINE L1 0 6582 234 3 625 29 60 0 0 chr9 5244021 5244071 -118832101 + AT_rich Low_complexity Low_complexity 1 50 0 3 625 242 0 61 0 chr9 5244513 5244546 -118831626 + (TAAAA)n Simple_repeat Simple_repeat 5 39 0 3 625 246 196 16 97 chr9 5245314 5245376 -118830796 - RSINE1 SINE B4 0 165 109 3 625 1028 87 58 0 chr9 5245574 5245712 -118830460 + B1_Mus1 SINE Alu 3 148 0 3 625 248 26 0 71 chr9 5245712 5245754 -118830418 + (A)n Simple_repeat Simple_repeat 1 39 0 3 625 1093 82 7 0 chr9 5246359 5246505 -118829667 + B1_Mm SINE Alu 1 147 0 3 625 219 140 0 0 chr9 5246505 5246555 -118829617 + (A)n Simple_repeat Simple_repeat 1 50 0 3 625 474 18 0 0 chr9 5246885 5246940 -118829232 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 625 377 138 0 11 chr9 5246940 5247035 -118829137 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 625 21 71 0 0 chr9 5247541 5247583 -118828589 + AT_rich Low_complexity Low_complexity 1 42 0 3 625 267 182 36 18 chr9 5247783 5247839 -118828333 - LTR86A2 LTR ERVL -418 90 34 3 625 34268 68 4 11 chr9 5247906 5254020 -118822152 - L1Md_F2 LINE L1 0 6582 511 3 625 320 299 0 0 chr9 5254022 5254109 -118822063 + LTR86A2 LTR ERVL 182 268 -240 3 625 517 157 9 9 chr9 5254704 5254820 -118821352 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 3 625 272 306 45 61 chr9 5255539 5255671 -118820501 - B3 SINE B2 -2 214 85 3 625 5322 142 85 7 chr9 5256543 5258348 -118817824 + L1_Mur1 LINE L1 208 2164 -3722 3 625 5858 82 4 5 chr9 5258347 5259376 -118816796 + L1_Mus2 LINE L1 4978 6005 -561 3 625 2410 111 17 2 chr9 5259369 5259774 -118816398 - L1_Mur1 LINE L1 -1967 3919 3509 3 625 4702 231 30 27 chr9 5259793 5261532 -118814640 - Lx5 LINE L1 -707 6343 4586 3 625 6994 107 7 5 chr9 5261527 5262759 -118813413 - Lx LINE L1 -2 6652 5419 3 625 2972 209 134 14 chr9 5262759 5263458 -118812714 + RMER13A LTR ERVK 78 860 0 3 625 1145 284 13 88 chr9 5263535 5263604 -118812568 + MTD LTR MaLR 7 68 -351 3 625 1158 68 0 26 chr9 5263604 5263755 -118812417 + B1_Mus1 SINE Alu 2 148 0 3 625 1145 284 13 88 chr9 5263755 5264059 -118812113 + MTD LTR MaLR 69 352 -67 3 625 204 348 110 25 chr9 5265750 5265868 -118810304 + MIR SINE MIR 1 128 -134 3 625 711 353 90 21 chr9 5265909 5266242 -118809930 + ORR1E LTR MaLR 4 359 0 3 625 3209 36 13 3 chr9 5266363 5266755 -118809417 - MTA_Mm LTR MaLR 0 396 1 3 625 335 157 0 0 chr9 5266822 5266873 -118809299 + HAL1-3A_ME LINE L1 1976 2026 -832 3 625 359 301 112 0 chr9 5266895 5267038 -118809134 + MER20 DNA MER1_type 37 195 -24 3 625 4617 136 85 49 chr9 5267155 5268030 -118808142 - RMER17A2 LTR ERVK 0 906 1 3 625 234 0 0 0 chr9 5268355 5268381 -118807791 + (T)n Simple_repeat Simple_repeat 1 26 0 3 625 24 32 0 0 chr9 5269668 5269699 -118806473 + AT_rich Low_complexity Low_complexity 1 31 0 3 625 234 221 165 21 chr9 5269772 5269869 -118806303 - L1MA8 LINE L1 -99 6192 6082 3 625 1180 68 0 0 chr9 5270178 5270325 -118805847 - B1_Mus2 SINE Alu 0 147 1 3 625 485 331 115 98 chr9 5270837 5271306 -118804866 - RMER20A LTR ERVK 0 516 40 3 625 647 319 44 5 chr9 5272431 5272636 -118803536 + B4 SINE B4 2 214 -78 3 625 1992 143 68 0 chr9 5272628 5272964 -118803208 - RLTR9A2 LTR ERVK -24 359 1 3 625 1388 135 5 9 chr9 5274097 5274321 -118801851 - Lx2 LINE L1 0 6997 6775 3 625 5271 131 7 15 chr9 5274321 5275197 -118800975 - Lx2 LINE L1 -354 6643 5775 3 625 2421 105 0 0 chr9 5275186 5275557 -118800615 + MusHAL1 LINE L1 1042 1412 -1300 3 625 303 80 0 0 chr9 5275556 5275605 -118800567 + Lx LINE L1 5757 5805 -1168 3 625 360 0 0 0 chr9 5276081 5276121 -118800051 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 625 11476 20 0 0 chr9 5276187 5278196 -118797976 - L1Md_A LINE L1 0 6582 4574 3 625 470 340 124 22 chr9 5278894 5279339 -118796833 + L1MEc LINE L1 220 709 -5691 3 625 5402 83 23 3 chr9 5279374 5280111 -118796061 - RLTR13D5 LTR ERVK 0 1023 272 3 625 2316 134 39 62 chr9 5280111 5280597 -118795575 + IAPLTR2_Mm LTR ERVK 1 475 0 3 625 4772 66 4 54 chr9 5280597 5281286 -118794886 + IAPEz-int LTR ERVK 8 662 -5819 3 625 442 66 0 32 chr9 5281286 5281349 -118794823 + IAPEz-int LTR ERVK 1359 1419 -5062 3 625 1823 119 4 4 chr9 5281338 5281600 -118794572 + IAPEz-int LTR ERVK 2236 2497 -5183 3 625 901 89 24 0 chr9 5281597 5281720 -118794452 + IAPEz-int LTR ERVK 4785 4910 -2770 3 625 20924 14 3 0 chr9 5281722 5284074 -118792098 + IAPEz-int LTR ERVK 4123 6481 0 3 625 2348 127 39 62 chr9 5284074 5284560 -118791612 + IAPLTR2_Mm LTR ERVK 1 475 0 3 625 2039 98 0 4 chr9 5284560 5284838 -118791334 - RLTR13D5 LTR ERVK -746 277 1 3 625 180 0 0 0 chr9 5285225 5285245 -118790927 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 625 337 296 80 98 chr9 5285247 5285573 -118790599 + L1MEc LINE L1 985 1304 -5096 3 625 4817 123 9 48 chr9 5285789 5286602 -118789570 + RLTR22_Mur LTR ERVK 31 811 -1037 3 625 401 322 49 62 chr9 5286802 5287027 -118789145 + RMER12 LTR ERVK 1101 1322 0 3 625 3641 152 50 17 chr9 5287227 5287883 -118788289 - Lx3B LINE L1 -1 6972 6295 3 625 211 28 27 27 chr9 5287888 5287925 -118788247 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 3 625 2900 112 14 138 chr9 5287935 5288600 -118787572 + RMER17A LTR ERVK 170 751 0 3 625 2349 229 50 161 chr9 5288770 5289732 -118786440 + RMER1B Other Other 65 919 -147 3 625 350 266 108 8 chr9 5290166 5290295 -118785877 + B1_Mur2 SINE Alu 8 149 0 3 625 624 317 83 59 chr9 5291758 5292130 -118784042 - MTD LTR MaLR -38 381 1 3 625 474 18 0 0 chr9 5292778 5292833 -118783339 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 625 1554 210 56 60 chr9 5293106 5293603 -118782569 - L1_Mur2 LINE L1 -921 4956 4462 3 625 411 21 0 0 chr9 5293603 5293651 -118782521 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 625 2842 234 22 20 chr9 5293655 5294365 -118781807 + Lx6 LINE L1 4993 5704 -176 3 625 3916 105 7 0 chr9 5294370 5294933 -118781239 + Lx3_Mus LINE L1 6367 6933 -76 3 625 198 0 0 0 chr9 5294941 5294963 -118781209 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 3 625 806 247 52 20 chr9 5294968 5295220 -118780952 + Lx6 LINE L1 5735 5994 -1466 3 625 699 335 42 34 chr9 5295988 5296343 -118779829 - MTEa LTR MaLR -3 376 19 3 625 249 150 0 0 chr9 5296913 5296953 -118779219 - MTEa LTR MaLR -381 40 1 3 625 1689 256 38 14 chr9 5297383 5297827 -118778345 + RMER5 LTR ERV1 1 455 -79 3 625 270 73 0 0 chr9 5297840 5297881 -118778291 + (A)n Simple_repeat Simple_repeat 1 41 0 3 625 342 0 0 0 chr9 5297961 5297999 -118778173 + (T)n Simple_repeat Simple_repeat 1 38 0 3 625 810 304 128 12 chr9 5298042 5298471 -118777701 + L1_Mur3 LINE L1 9 487 -7225 3 625 216 0 0 0 chr9 5299131 5299155 -118777017 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 625 26 30 0 0 chr9 5300524 5300557 -118775615 + AT_rich Low_complexity Low_complexity 1 33 0 3 625 264 341 32 24 chr9 5301692 5301818 -118774354 - L3 LINE CR1 -572 3917 3791 3 625 22 56 0 0 chr9 5302133 5302169 -118774003 + AT_rich Low_complexity Low_complexity 1 36 0 3 625 215 284 125 19 chr9 5302171 5302275 -118773897 - L3 LINE CR1 -898 3591 3477 3 625 22 35 0 0 chr9 5303412 5303441 -118772731 + AT_rich Low_complexity Low_complexity 1 29 0 3 625 23 33 0 0 chr9 5304415 5304445 -118771727 + AT_rich Low_complexity Low_complexity 1 30 0 3 625 2373 110 14 3 chr9 5304455 5304820 -118771352 - L1_Mus3 LINE L1 -7 6631 6263 3 625 252 0 0 0 chr9 5306325 5306353 -118769819 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 625 315 71 0 0 chr9 5306801 5306843 -118769329 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 625 2723 222 7 17 chr9 5310388 5311101 -118765071 - Lx6 LINE L1 -1241 6219 5517 4 625 348 274 110 63 chr9 5311098 5311417 -118764755 - L1M2 LINE L1 -824 5488 5165 4 625 3208 157 139 7 chr9 5311417 5312027 -118764145 - RLTR17 LTR ERVK 0 692 2 4 625 348 268 132 75 chr9 5312027 5312285 -118763887 - L1M2 LINE L1 -979 5164 4888 4 625 287 289 157 0 chr9 5312629 5312947 -118763225 - L1M2 LINE L1 -1497 4646 4279 4 625 218 143 20 0 chr9 5313029 5313078 -118763094 + CT-rich Low_complexity Low_complexity 1 50 0 4 625 19973 127 36 18 chr9 5313102 5317002 -118759170 - L1_Mus2 LINE L1 -2 6564 2586 4 625 5567 157 45 22 chr9 5317002 5318327 -118757845 - L1VL1 LINE L1 -2342 1356 5 4 625 267 54 0 0 chr9 5318354 5318391 -118757781 + (A)n Simple_repeat Simple_repeat 1 37 0 4 625 618 241 99 23 chr9 5318466 5318687 -118757485 - Lx7 LINE L1 -265 7431 7194 4 625 23 0 0 0 chr9 5318688 5318711 -118757461 + AT_rich Low_complexity Low_complexity 1 23 0 4 625 1216 78 0 0 chr9 5318803 5318969 -118757203 - L1_Mus1 LINE L1 -1 6566 6401 4 625 23 0 0 0 chr9 5319025 5319048 -118757124 + AT_rich Low_complexity Low_complexity 1 23 0 4 625 21 0 0 0 chr9 5319395 5319416 -118756756 + AT_rich Low_complexity Low_complexity 1 21 0 4 625 429 45 30 0 chr9 5319963 5320030 -118756142 - L1Md_F3 LINE L1 -1 6583 6515 4 625 26 0 0 0 chr9 5320581 5320607 -118755565 + AT_rich Low_complexity Low_complexity 1 26 0 4 625 23 0 0 0 chr9 5320693 5320716 -118755456 + AT_rich Low_complexity Low_complexity 1 23 0 4 625 22 0 0 0 chr9 5323084 5323106 -118753066 + AT_rich Low_complexity Low_complexity 1 22 0 4 625 267 31 0 0 chr9 5323900 5323932 -118752240 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 625 1289 73 0 6 chr9 5323932 5324111 -118752061 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4 625 290 293 48 54 chr9 5325302 5325468 -118750704 + L1M2 LINE L1 2523 2687 -3456 4 625 510 279 49 58 chr9 5325631 5325982 -118750190 + L1MA4 LINE L1 5688 6022 -278 4 625 554 314 22 8 chr9 5326333 5326605 -118749567 - L1MA4 LINE L1 -228 5943 5667 4 625 185 0 40 0 chr9 5326938 5326963 -118749209 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 4 625 429 20 0 0 chr9 5326969 5327019 -118749153 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 625 324 0 0 0 chr9 5328358 5328394 -118747778 + (A)n Simple_repeat Simple_repeat 1 36 0 4 625 2406 79 0 0 chr9 5328855 5329170 -118747002 + L1_Mus3 LINE L1 5588 5902 -736 4 625 609 223 39 28 chr9 5329225 5329405 -118746767 - Lx7 LINE L1 0 7696 7515 4 625 288 77 0 0 chr9 5329418 5329457 -118746715 + (TGG)n Simple_repeat Simple_repeat 1 39 0 4 625 210 235 12 36 chr9 5329470 5329554 -118746618 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 4 625 491 279 137 0 chr9 5329570 5329731 -118746441 - Lx6 LINE L1 -727 6733 6551 4 625 7307 189 64 26 chr9 5329735 5330328 -118745844 - L1_Mur3 LINE L1 -645 5235 4635 4 625 396 0 0 0 chr9 5330328 5330372 -118745800 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 625 7307 189 64 26 chr9 5330372 5331331 -118744841 - L1_Mur3 LINE L1 -1246 4634 3629 4 625 2311 153 20 7 chr9 5331331 5331739 -118744433 - Lx LINE L1 -4 6650 6238 4 625 7307 189 64 26 chr9 5331739 5331893 -118744279 - L1_Mur3 LINE L1 -2252 3628 3465 4 625 1981 160 25 3 chr9 5331955 5332281 -118743891 + Lx4A LINE L1 6725 7057 -1 4 625 1952 148 12 15 chr9 5332891 5333221 -118742951 + ORR1A4 LTR MaLR 1 329 0 4 625 9026 172 22 23 chr9 5333221 5335016 -118741156 + ORR1A4-int LTR MaLR 1 1792 0 4 625 1926 146 9 12 chr9 5335018 5335338 -118740834 + ORR1A4 LTR MaLR 3 321 -8 4 625 3594 33 0 0 chr9 5335449 5335875 -118740297 - L1Md_T LINE L1 0 6582 6157 4 625 367 356 88 10 chr9 5337147 5337340 -118738832 + MTE2a LTR MaLR 172 379 0 4 625 20687 97 8 7 chr9 5337739 5340738 -118735434 + L1Md_F2 LINE L1 2584 5586 -297 4 625 7151 79 20 3 chr9 5340739 5341706 -118734466 + L1Md_F2 LINE L1 5588 6570 -12 4 625 270 0 0 0 chr9 5342034 5342064 -118734108 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 625 249 301 0 0 chr9 5343002 5343075 -118733097 + Lx8 LINE L1 7033 7105 -368 4 625 23 0 0 0 chr9 5344673 5344696 -118731476 + AT_rich Low_complexity Low_complexity 1 23 0 4 625 1174 68 0 0 chr9 5344696 5344844 -118731328 - B1_Mus1 SINE Alu 0 148 1 4 625 208 163 61 0 chr9 5347133 5347173 -118728999 + T-rich Low_complexity Low_complexity 13 55 0 4 625 5762 146 4 2 chr9 5347173 5348093 -118728079 - Lx2 LINE L1 -3 6994 6073 4 625 2912 34 0 0 chr9 5349757 5350107 -118726065 - L1Md_F2 LINE L1 0 6582 6233 4 625 21 36 0 0 chr9 5350635 5350663 -118725509 + AT_rich Low_complexity Low_complexity 1 28 0 4 625 198 340 18 44 chr9 5350945 5351059 -118725113 - L2a LINE L2 -49 3377 3267 4 625 369 265 0 0 chr9 5351457 5351589 -118724583 + (TG)n Simple_repeat Simple_repeat 1 132 0 4 625 360 300 196 45 chr9 5354116 5354315 -118721857 + B4 SINE B4 1 229 -63 4 625 6158 68 0 6 chr9 5355174 5355978 -118720194 + L1Md_F2 LINE L1 5784 6582 0 4 625 270 252 68 51 chr9 5356132 5356249 -118719923 - MER5A1 DNA MER1_type -18 148 30 4 625 198 0 0 0 chr9 5358637 5358659 -118717513 + (TTG)n Simple_repeat Simple_repeat 3 24 0 4 625 39584 28 2 6 chr9 5359135 5365310 -118710862 - L1Md_T LINE L1 0 6582 438 4 625 2704 145 26 34 chr9 5366031 5366530 -118709642 - Lx LINE L1 -15 6639 6145 4 625 13457 153 13 13 chr9 5366533 5367221 -118708951 - Lx LINE L1 -642 6012 5322 4 625 1101 95 0 20 chr9 5367221 5367371 -118708801 - B1_Mus1 SINE Alu 0 148 2 4 625 13457 180 22 34 chr9 5367371 5368419 -118707753 - Lx LINE L1 -562 5321 4281 4 625 423 0 0 0 chr9 5368419 5368466 -118707706 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 625 1058 95 0 0 chr9 5368466 5368603 -118707569 - B1_Mus1 SINE Alu -11 137 1 4 625 13457 180 22 34 chr9 5368603 5369856 -118706316 - Lx LINE L1 -1603 4280 3055 4 625 4960 108 20 17 chr9 5369867 5370805 -118705367 - L1VL2 LINE L1 -2411 1204 271 4 625 266 24 73 0 chr9 5371329 5371370 -118704802 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 625 1097 116 0 0 chr9 5371371 5371518 -118704654 - B1_Mus2 SINE Alu 0 147 1 4 625 21 0 0 0 chr9 5371704 5371725 -118704447 + AT_rich Low_complexity Low_complexity 1 21 0 4 625 23 0 0 0 chr9 5371963 5371986 -118704186 + AT_rich Low_complexity Low_complexity 1 23 0 4 625 269 294 131 46 chr9 5372935 5373088 -118703084 + L2a LINE L2 3226 3391 -35 4 625 213 131 48 16 chr9 5373214 5373266 -118702906 + A-rich Low_complexity Low_complexity 2 55 0 4 625 3030 136 73 16 chr9 5373266 5373812 -118702360 + Lx LINE L1 6078 6654 0 4 626 21 36 0 0 chr9 5374650 5374678 -118701494 + AT_rich Low_complexity Low_complexity 1 28 0 4 626 201 74 0 0 chr9 5374830 5374857 -118701315 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 626 198 103 0 0 chr9 5374857 5374886 -118701286 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 626 644 306 30 45 chr9 5376146 5376413 -118699759 + Lx8 LINE L1 6702 6964 -509 4 626 8123 168 14 192 chr9 5376503 5377027 -118699145 + L1_Mur2 LINE L1 3046 3483 -2394 4 626 1354 39 10 0 chr9 5377027 5377234 -118698938 + (GAAA)n Simple_repeat Simple_repeat 1 208 0 4 626 8123 168 14 192 chr9 5377234 5378733 -118697439 + L1_Mur2 LINE L1 3484 4661 -1216 4 626 4294 86 0 2 chr9 5378733 5379306 -118696866 + L1_Mus1 LINE L1 5996 6567 0 4 626 8123 168 14 192 chr9 5379306 5380020 -118696152 + L1_Mur2 LINE L1 4662 5296 -581 4 626 27474 140 16 32 chr9 5380020 5386550 -118689622 + L1_Mus2 LINE L1 233 6566 0 4 626 2166 197 18 5 chr9 5386545 5387004 -118689168 + L1_Mm LINE L1 5221 5704 -179 4 626 7480 116 88 1 chr9 5387458 5388961 -118687211 - L1_Mus3 LINE L1 -2 6636 4925 4 626 2054 93 3 26 chr9 5388963 5389271 -118686901 + L1_Mus1 LINE L1 6267 6567 0 4 626 6770 157 16 11 chr9 5390322 5391545 -118684627 - L1_Mus3 LINE L1 -946 4937 3709 4 626 8452 164 75 50 chr9 5391537 5393937 -118682235 - L1_Mus3 LINE L1 -2927 2956 503 4 626 2006 117 220 30 chr9 5395902 5396307 -118679865 + RLTR45 LTR ERVK 1 482 0 4 626 3907 89 35 21 chr9 5396307 5396870 -118679302 + RLTR45-int LTR ERVK 1 571 -6673 4 626 1123 35 0 40 chr9 5397633 5397783 -118678389 + RLTR45-int LTR ERVK 549 692 -6552 4 626 1746 68 0 0 chr9 5398139 5398359 -118677813 + RLTR45-int LTR ERVK 692 911 -6333 4 626 708 177 34 13 chr9 5398476 5398625 -118677547 + RLTR45-int LTR ERVK 913 1064 -6180 4 626 2628 69 0 0 chr9 5399371 5399703 -118676469 + RLTR45-int LTR ERVK 1317 1648 -5596 4 626 522 295 6 13 chr9 5400067 5400225 -118675947 + RNERVK23-int LTR ERVK 7388 7544 -673 4 626 225 278 35 113 chr9 5400225 5400367 -118675805 - LTR50 LTR ERVL -529 266 136 4 626 6934 57 7 0 chr9 5400367 5401205 -118674967 + RLTR45-int LTR ERVK 6401 7244 0 4 626 2185 134 142 21 chr9 5401207 5401635 -118674537 + RLTR45 LTR ERVK 3 482 0 4 626 225 0 0 0 chr9 5402165 5402190 -118673982 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 626 23 68 0 0 chr9 5402888 5402932 -118673240 + AT_rich Low_complexity Low_complexity 1 44 0 4 626 36 40 0 0 chr9 5402983 5403033 -118673139 + AT_rich Low_complexity Low_complexity 1 50 0 4 626 540 281 35 106 chr9 5403136 5403335 -118672837 + B3A SINE B2 3 187 -29 4 626 3353 159 28 2 chr9 5403492 5404067 -118672105 - Lx2 LINE L1 0 6997 6408 4 626 533 228 78 26 chr9 5406424 5406577 -118669595 + MTD LTR MaLR 257 417 -2 4 626 189 0 0 0 chr9 5407008 5407029 -118669143 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 626 1120 78 0 0 chr9 5407249 5407391 -118668781 - B1_Mm SINE Alu -5 142 1 4 626 1828 162 12 96 chr9 5407743 5408172 -118668000 - RLTR9C LTR ERVK 0 393 1 4 626 936 70 27 47 chr9 5408332 5408482 -118667690 - B1_Mm SINE Alu 0 147 1 4 626 346 306 76 25 chr9 5409147 5409345 -118666827 + L1MA8 LINE L1 5881 6088 -203 4 626 1104 8 0 0 chr9 5409372 5409497 -118666675 + (GAA)n Simple_repeat Simple_repeat 2 126 0 4 626 314 23 0 23 chr9 5409520 5409564 -118666608 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 626 3142 133 36 0 chr9 5409567 5410064 -118666108 + Lx3B LINE L1 6406 6920 -53 4 626 3536 88 19 0 chr9 5410358 5410870 -118665302 - MusHAL1 LINE L1 -57 2655 2134 4 626 3931 109 9 61 chr9 5411594 5412270 -118663902 - MusHAL1 LINE L1 -576 2136 1496 4 626 3241 164 77 40 chr9 5412270 5413260 -118662912 - RLTR13D1 LTR ERVK -58 965 1 4 626 9502 101 17 9 chr9 5413260 5414786 -118661386 - MusHAL1 LINE L1 -1211 2142 605 4 626 437 129 0 0 chr9 5414779 5414841 -118661331 - L1VL4 LINE L1 -6240 62 1 4 626 798 254 32 18 chr9 5415961 5416182 -118659990 + URR1B DNA MER1_type 1 224 -1 4 626 237 288 0 17 chr9 5417733 5417793 -118658379 - MIR SINE MIR -116 146 88 4 626 487 292 91 10 chr9 5419052 5419249 -118656923 - B3 SINE B2 -1 215 3 4 626 346 285 101 80 chr9 5419260 5419424 -118656748 + B3A SINE B2 36 211 -5 5 626 244 340 81 33 chr9 5419825 5420096 -118656076 + MER99 DNA hAT? 98 381 -450 5 626 347 281 52 32 chr9 5420150 5420318 -118655854 + MER99 DNA hAT? 501 713 -118 5 626 21 0 0 0 chr9 5420357 5420378 -118655794 + AT_rich Low_complexity Low_complexity 1 21 0 5 626 324 243 0 75 chr9 5420380 5420460 -118655712 - Lx9 LINE L1 -402 7242 7169 5 626 2420 100 85 89 chr9 5421302 5421786 -118654386 - RLTR45 LTR ERVK 0 482 1 5 626 497 68 14 0 chr9 5421988 5422062 -118654110 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 626 228 337 152 0 chr9 5422072 5422164 -118654008 - RSINE1 SINE B4 -22 143 38 5 626 429 20 0 0 chr9 5422659 5422709 -118653463 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 626 221 53 53 0 chr9 5423661 5423699 -118652473 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 5 626 1346 220 105 49 chr9 5423817 5424228 -118651944 - RMER10A LTR ERVL -8 434 1 5 626 467 240 90 53 chr9 5424566 5424755 -118651417 - RMER17C-int LTR ERVK -391 2847 2652 5 626 592 216 83 79 chr9 5424867 5425108 -118651064 - MYSERV6-int LTR ERVK -2335 3802 3561 5 626 682 280 116 76 chr9 5425369 5425941 -118650231 - MYSERV6-int LTR ERVK -1482 7477 7163 5 626 338 171 78 87 chr9 5425944 5426059 -118650113 - RLTR42-int LTR ERVK -3432 2090 1977 5 626 13048 134 69 14 chr9 5426268 5429888 -118646284 + L1VL4 LINE L1 356 4138 -1745 5 626 558 154 17 8 chr9 5429888 5430006 -118646166 + L1_Mus4 LINE L1 6508 6626 -10 5 626 308 282 84 117 chr9 5430142 5430475 -118645697 - RLTR42-int LTR ERVK -3664 1858 1537 5 626 284 191 14 14 chr9 5430497 5430566 -118645606 - RLTR42-int LTR ERVK -5170 967 899 5 626 2091 192 11 11 chr9 5431255 5431629 -118644543 - RLTR41 LTR ERV1 0 446 73 5 626 350 380 18 0 chr9 5431653 5431766 -118644406 - B4A SINE B4 -153 139 25 5 626 2816 183 45 36 chr9 5432390 5432951 -118643221 - RLTR20A2 LTR ERVK -12 566 1 5 626 266 314 103 36 chr9 5433637 5433802 -118642370 - MER45B DNA Tip100 -197 843 668 5 626 312 287 20 0 chr9 5433921 5434022 -118642150 + Lx7 LINE L1 7246 7348 -348 5 626 22 56 0 0 chr9 5434055 5434091 -118642081 + AT_rich Low_complexity Low_complexity 1 36 0 5 626 509 184 9 0 chr9 5434129 5434238 -118641934 + (TA)n Simple_repeat Simple_repeat 2 111 0 5 626 774 205 80 106 chr9 5434245 5434584 -118641588 + Lx7 LINE L1 7367 7696 0 5 626 189 406 0 0 chr9 5434631 5434727 -118641445 + MIR SINE MIR 22 117 -145 5 626 757 299 198 12 chr9 5434995 5435353 -118640819 - MTC LTR MaLR -20 401 1 5 626 354 23 0 0 chr9 5436511 5436554 -118639618 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 626 216 158 0 0 chr9 5436756 5436794 -118639378 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 5 626 2956 84 7 2 chr9 5438047 5438466 -118637706 - BGLII LTR ERVK 0 421 1 5 626 469 255 98 67 chr9 5438946 5439110 -118637062 - MTE2a LTR MaLR -58 321 153 5 626 7875 54 1 3 chr9 5440587 5440652 -118635520 - L1Md_F2 LINE L1 -13 6569 6506 5 626 1890 12 283 0 chr9 5440652 5440903 -118635269 - RLTRETN_Mm LTR ERVK 0 322 1 5 626 7875 64 1 2 chr9 5440903 5442240 -118633932 - L1Md_F2 LINE L1 -77 6505 5169 5 626 10954 90 8 35 chr9 5442238 5443133 -118633039 - L1Md_F2 LINE L1 -3007 2876 1978 5 626 187 29 86 0 chr9 5443133 5443168 -118633004 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 626 10954 128 35 46 chr9 5443168 5444755 -118631417 - L1Md_F2 LINE L1 -3906 1977 380 5 626 259 318 77 50 chr9 5444910 5445092 -118631080 - ORR1C2 LTR MaLR -26 358 172 5 626 2390 45 29 0 chr9 5444998 5445306 -118630866 - IAPLTR2b LTR ERVK -10 317 1 5 626 13417 88 8 9 chr9 5445306 5447133 -118629039 - IAPEz-int LTR ERVK 0 6481 4656 5 626 1897 71 4 0 chr9 5447132 5447371 -118628801 - IAPEY3-int LTR ERVK -5183 2497 2258 5 626 381 88 0 0 chr9 5447376 5447433 -118628739 - B1_Mus1 SINE Alu -91 57 1 5 626 1448 81 0 11 chr9 5447433 5447621 -118628551 - IAPLTR4_I LTR ERVK -288 1182 997 5 626 732 235 60 25 chr9 5447825 5448026 -118628146 + B3 SINE B2 9 216 0 5 626 203 267 0 26 chr9 5449128 5449205 -118626967 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 5 626 28 29 0 0 chr9 5449302 5449337 -118626835 + AT_rich Low_complexity Low_complexity 1 35 0 5 626 566 296 62 6 chr9 5449609 5449786 -118626386 + ID_B1 SINE B4 6 192 -32 5 626 249 273 126 47 chr9 5449689 5449816 -118626356 + B1_Mus1 SINE Alu 12 148 0 5 626 259 250 19 0 chr9 5449913 5449965 -118626207 + B1F SINE Alu 22 74 -75 5 626 308 339 86 71 chr9 5450992 5451132 -118625040 + B1F SINE Alu 1 142 -7 5 626 358 301 28 37 chr9 5451137 5451244 -118624928 + RSINE1 SINE B4 48 153 -12 5 626 465 19 0 0 chr9 5451245 5451299 -118624873 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 626 360 59 0 0 chr9 5451300 5451351 -118624821 + (CAGAGA)n Simple_repeat Simple_repeat 6 56 0 5 626 725 71 0 0 chr9 5451372 5451471 -118624701 + B1_Mus2 SINE Alu 46 144 -3 5 626 8638 124 22 13 chr9 5451479 5453589 -118622583 + Lx3A LINE L1 4865 6980 -1 5 626 3511 111 20 13 chr9 5454410 5455334 -118620838 + L1VL4 LINE L1 402 1328 -2231 5 626 2525 64 0 0 chr9 5455331 5455644 -118620528 + L1Md_F2 LINE L1 5811 6123 -459 5 626 3712 150 66 118 chr9 5455957 5456586 -118619586 + RMER17C-int LTR ERVK 1696 2329 -909 5 626 610 264 191 38 chr9 5456586 5456905 -118619267 - RLTR9A LTR ERVK 0 368 1 5 626 3712 150 66 118 chr9 5456905 5457211 -118618961 + RMER17C-int LTR ERVK 2330 2583 -655 5 626 930 156 5 52 chr9 5457213 5457423 -118618749 - L1_Mur2 LINE L1 -1500 4377 4178 5 626 2476 145 59 4 chr9 5457420 5457897 -118618275 - L1_Mur2 LINE L1 -2094 3783 3281 5 626 4067 153 35 24 chr9 5457891 5458714 -118617458 - L1_Mur2 LINE L1 -3338 2539 1708 5 626 5563 122 35 1 chr9 5458720 5459580 -118616592 - Lx LINE L1 -8 6646 5758 5 626 2518 184 150 8 chr9 5459581 5460176 -118615996 - RLTR17 LTR ERVK -8 684 6 5 626 3448 67 39 6 chr9 5460177 5460644 -118615528 - RLTR45 LTR ERVK 0 482 1 5 626 5502 178 8 5 chr9 5460653 5461649 -118614523 - L1_Mm LINE L1 -112 5771 4773 5 626 247 98 0 0 chr9 5461647 5461688 -118614484 - L1_Mur2 LINE L1 -4159 1718 1678 5 626 1605 244 67 51 chr9 5461725 5462218 -118613954 - RLTR20B3 LTR ERVK -56 521 21 5 626 4649 156 67 14 chr9 5462222 5463581 -118612591 - L1_Mur2 LINE L1 -4192 1685 379 5 626 5071 185 33 6 chr9 5463573 5464822 -118611350 + Lx5 LINE L1 4809 6094 -956 5 626 4276 209 30 5 chr9 5464853 5465002 -118611170 + Lx5 LINE L1 6201 6349 -701 5 626 477 0 0 0 chr9 5465002 5465055 -118611117 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 626 4276 209 30 5 chr9 5465055 5465731 -118610441 + Lx5 LINE L1 6350 7046 -4 5 626 4786 241 26 16 chr9 5465803 5467605 -118608567 - L1_Mur3 LINE L1 -4006 1874 49 5 626 319 319 84 24 chr9 5468022 5468189 -118607983 - MER21B LTR ERV1 -224 639 463 5 626 368 327 6 61 chr9 5468318 5468481 -118607691 - Lx7 LINE L1 -587 7109 6956 5 626 442 317 58 53 chr9 5468484 5468674 -118607498 + Lx7 LINE L1 7118 7308 -388 5 626 605 105 11 0 chr9 5468684 5468779 -118607393 + (TC)n Simple_repeat Simple_repeat 2 97 0 5 626 306 67 0 0 chr9 5470609 5470654 -118605518 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 626 23 54 0 0 chr9 5471308 5471345 -118604827 + AT_rich Low_complexity Low_complexity 1 37 0 5 626 616 292 25 8 chr9 5472130 5472431 -118603741 - L1_Rod LINE L1 -498 5658 5300 5 626 769 255 9 50 chr9 5472627 5472846 -118603326 + B3 SINE B2 1 210 -6 5 626 402 314 65 25 chr9 5473250 5473495 -118602677 - L1MC4 LINE L1 -461 7581 7327 5 626 21 0 0 0 chr9 5473542 5473563 -118602609 + AT_rich Low_complexity Low_complexity 1 21 0 5 626 194 208 19 0 chr9 5473899 5473952 -118602220 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 626 569 307 40 40 chr9 5474189 5474481 -118601691 - MTE2b LTR MaLR 0 379 58 5 626 16875 111 18 6 chr9 5474931 5478206 -118597966 - L1_Mus2 LINE L1 0 6566 3251 5 626 522 46 0 0 chr9 5478206 5478271 -118597901 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 5 626 461 195 8 0 chr9 5478273 5478305 -118597867 - L1_Mur2 LINE L1 -2584 3293 3261 5 626 1204 34 7 0 chr9 5478305 5478451 -118597721 - B1_Mm SINE Alu 0 147 1 5 626 628 95 0 0 chr9 5478451 5478541 -118597631 - L1VL1 LINE L1 -646 3052 2963 5 626 260 15 118 15 chr9 5478549 5478617 -118597555 + (CAAAA)n Simple_repeat Simple_repeat 3 77 0 5 626 24 0 0 0 chr9 5478633 5478657 -118597515 + AT_rich Low_complexity Low_complexity 1 24 0 5 626 11797 127 22 56 chr9 5479865 5482063 -118594109 - L1VL1 LINE L1 -756 2942 760 5 626 450 101 93 8 chr9 5482063 5482161 -118594011 - B1_Mur4 SINE Alu 0 150 34 5 626 11797 127 22 56 chr9 5482161 5482895 -118593277 - L1VL1 LINE L1 -756 759 30 5 626 256 228 62 19 chr9 5484322 5484483 -118591689 + (TA)n Simple_repeat Simple_repeat 2 169 0 5 626 5472 41 0 3 chr9 5484713 5485376 -118590796 - L1Md_F2 LINE L1 0 6582 5922 5 626 3284 144 32 2 chr9 5485761 5485850 -118590322 - RLTR20A1 LTR ERVK 0 551 459 5 626 411 56 0 0 chr9 5485850 5485904 -118590268 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 626 3284 144 32 2 chr9 5485904 5486349 -118589823 - RLTR20A1 LTR ERVK -93 458 3 5 626 305 188 0 0 chr9 5487513 5487561 -118588611 - RLTR25A LTR ERVK 0 1103 1056 5 626 2618 155 36 52 chr9 5487566 5488057 -118588115 - RLTR25A LTR ERVK -208 895 413 5 626 2837 92 30 71 chr9 5488057 5488523 -118587649 - LTRIS5 LTR ERV1 0 447 1 5 626 1739 154 30 10 chr9 5488523 5488817 -118587355 - RLTR25A LTR ERVK -692 411 112 5 626 616 213 112 0 chr9 5488822 5489010 -118587162 + MYSERV16_I-int LTR ERVK 2027 2235 -91 5 626 2391 141 26 10 chr9 5489076 5489491 -118586681 + BGLII_Mus LTR ERVK 1 422 0 5 626 625 200 9 9 chr9 5489491 5489602 -118586570 - RLTR25A LTR ERVK -986 117 7 5 626 362 278 93 0 chr9 5489590 5489687 -118586485 - B1F SINE Alu -25 124 19 5 626 1124 77 0 0 chr9 5489733 5489876 -118586296 - B1_Mus1 SINE Alu -3 145 3 5 626 241 351 18 0 chr9 5490728 5490839 -118585333 + Lx8 LINE L1 7042 7154 -319 5 626 1295 72 0 6 chr9 5490856 5491037 -118585135 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 626 4515 77 21 20 chr9 5491039 5491704 -118584468 - L1Md_F2 LINE L1 -13 6623 5988 5 626 1126 55 14 0 chr9 5491704 5491849 -118584323 + B1_Mus2 SINE Alu 1 147 0 5 626 9756 84 10 15 chr9 5491849 5493268 -118582904 - L1Md_F2 LINE L1 -649 5987 4610 5 626 278 333 0 36 chr9 5493335 5493419 -118582753 + Lx8 LINE L1 7249 7329 -144 5 626 913 293 72 34 chr9 5493420 5493808 -118582364 + Lx8 LINE L1 7066 7468 -5 5 626 243 270 17 59 chr9 5493826 5493944 -118582228 + Lx8 LINE L1 7355 7467 -6 5 626 6859 7 0 0 chr9 5494112 5494876 -118581296 - L1Md_T LINE L1 0 6582 5819 5 626 458 268 130 0 chr9 5498052 5498175 -118577997 - B1_Mur2 SINE Alu -7 142 4 5 626 247 143 71 0 chr9 5498677 5498733 -118577439 + (TCTG)n Simple_repeat Simple_repeat 2 61 0 5 626 225 65 0 0 chr9 5498740 5498771 -118577401 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 626 216 86 0 0 chr9 5499387 5499422 -118576750 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 626 246 105 0 0 chr9 5499511 5499549 -118576623 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 6 626 232 297 27 13 chr9 5500111 5500186 -118575986 + MIRb SINE MIR 102 177 -91 1 626 455 262 27 20 chr9 5500215 5500363 -118575809 - Lx9 LINE L1 -429 7215 7067 2 626 617 198 143 0 chr9 5500378 5500560 -118575612 + Lx9 LINE L1 7258 7465 -179 3 626 516 32 0 0 chr9 5500565 5500627 -118575545 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 626 28 48 0 0 chr9 5500765 5500807 -118575365 + AT_rich Low_complexity Low_complexity 1 42 0 5 626 511 269 112 29 chr9 5500811 5501052 -118575120 - RMER1C Other Other 0 1342 1082 6 626 1323 153 37 4 chr9 5501192 5501435 -118574737 + L1_Mur2 LINE L1 4070 4320 -1557 7 626 240 100 0 0 chr9 5501512 5501552 -118574620 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 626 396 0 0 0 chr9 5501948 5501992 -118574180 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 626 223 214 0 18 chr9 5502383 5502440 -118573732 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 1 626 1733 162 35 0 chr9 5504567 5504850 -118571322 + L1VL4 LINE L1 1 293 -6009 1 78 10963 185 36 38 chr9 5504846 5507391 -118568781 + L1_Mur1 LINE L1 1977 4515 -1371 1 627 4085 216 39 10 chr9 5507411 5508235 -118567937 - RMER13B LTR ERVK -60 848 1 1 627 1107 150 0 0 chr9 5508235 5508422 -118567750 + L1_Mur1 LINE L1 4492 4678 -1199 1 627 5122 29 5 3 chr9 5508421 5509024 -118567148 + L1Md_F3 LINE L1 5952 6553 -31 1 627 218 95 24 0 chr9 5509024 5509066 -118567106 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 627 5122 96 12 1 chr9 5509066 5509139 -118567033 + L1Md_F3 LINE L1 6554 6568 -16 1 627 1062 231 81 4 chr9 5509182 5509430 -118566742 + RMER19C LTR ERVK 321 587 -24 1 627 305 297 26 46 chr9 5509512 5509664 -118566508 - L1MC LINE L1 -1457 4689 4541 1 627 203 194 0 0 chr9 5510360 5510396 -118565776 + A-rich Low_complexity Low_complexity 1 36 0 1 627 2333 64 32 0 chr9 5511104 5511416 -118564756 + L1_Mus1 LINE L1 6245 6566 -1 1 627 1430 255 29 57 chr9 5511580 5511963 -118564209 + ORR1D1 LTR MaLR 3 374 0 2 627 1080 230 7 210 chr9 5512417 5512956 -118563216 - RLTR23 LTR ERV1 0 430 1 2 627 249 33 0 0 chr9 5514786 5514816 -118561356 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 627 618 112 0 9 chr9 5514819 5514927 -118561245 - L1_Mus4 LINE L1 -6 6630 6524 2 627 813 193 254 7 chr9 5515679 5515792 -118560380 - Lx9 LINE L1 -1 7643 7515 2 627 465 90 0 0 chr9 5515792 5515859 -118560313 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 627 813 193 254 7 chr9 5515859 5516032 -118560140 - Lx9 LINE L1 -130 7514 7286 2 627 21 57 0 0 chr9 5516521 5516556 -118559616 + AT_rich Low_complexity Low_complexity 1 35 0 2 627 399 411 0 12 chr9 5516759 5516919 -118559253 + RSINE1 SINE B4 4 161 -4 2 627 401 292 39 56 chr9 5518644 5518822 -118557350 - RMER21B LTR ERV1 -365 477 303 2 627 2010 167 6 22 chr9 5518924 5519286 -118556886 - ORR1B1 LTR MaLR 0 394 39 2 627 587 355 81 34 chr9 5519868 5520510 -118555662 + Lx8 LINE L1 6801 7472 -1 3 627 1207 41 7 0 chr9 5521190 5521336 -118554836 + B1_Mus1 SINE Alu 2 148 0 3 627 319 247 91 0 chr9 5521823 5521900 -118554272 + L1_Mur2 LINE L1 607 690 -6396 3 627 8818 148 69 9 chr9 5521897 5522970 -118553202 + L1_Mur2 LINE L1 860 2034 -3843 3 627 477 0 0 0 chr9 5522970 5523023 -118553149 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 627 8818 144 64 11 chr9 5523023 5523621 -118552551 + L1_Mur2 LINE L1 2035 2649 -3228 3 627 1881 246 44 43 chr9 5523621 5524185 -118551987 - RMER2 LTR ERV1 0 567 3 3 627 8818 144 64 11 chr9 5524185 5524508 -118551664 + L1_Mur2 LINE L1 2650 2966 -2911 3 627 7439 132 29 2 chr9 5524504 5525728 -118550444 + L1_Mm LINE L1 3578 4835 -1048 3 627 1818 106 3 47 chr9 5525728 5526025 -118550147 + L1_Mus2 LINE L1 6283 6566 0 3 627 360 0 0 0 chr9 5526100 5526140 -118550032 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 627 26 0 0 0 chr9 5526265 5526291 -118549881 + AT_rich Low_complexity Low_complexity 1 26 0 3 627 23 33 0 0 chr9 5526831 5526861 -118549311 + AT_rich Low_complexity Low_complexity 1 30 0 3 627 1034 227 91 98 chr9 5527043 5527439 -118548733 + RLTR9C LTR ERVK 1 393 0 4 627 6834 103 38 51 chr9 5527440 5528584 -118547588 + MMETn-int LTR ERVK 2 1130 -3714 4 627 1655 188 21 29 chr9 5528607 5528986 -118547186 + MMETn-int LTR ERVK 2628 3003 -4403 4 627 824 155 7 20 chr9 5528986 5529137 -118547035 + RLTR13D1 LTR ERVK 502 650 -156 4 627 5208 160 41 28 chr9 5529646 5530745 -118545427 + MMETn-int LTR ERVK 2356 4100 -3306 4 627 4497 42 2 5 chr9 5530745 5531299 -118544873 - L1Md_F2 LINE L1 -11 6571 6020 4 627 5208 84 1 69 chr9 5531299 5531905 -118544267 + MMETn-int LTR ERVK 2557 3141 -1703 4 627 4637 149 50 46 chr9 5531874 5532725 -118543447 + ETnERV2-int LTR ERVK 6127 6981 -425 4 627 409 185 11 0 chr9 5533689 5533781 -118542391 - Lx2A LINE L1 0 7008 6916 4 627 2301 117 130 0 chr9 5533779 5534163 -118542009 - Lx2A LINE L1 -31 6977 6544 4 627 2235 162 23 8 chr9 5534163 5534560 -118541612 - RLTR9D LTR ERVK 0 403 1 4 627 359 113 40 40 chr9 5534561 5534635 -118541537 - ETnERV2-int LTR ERVK -2 7404 7331 4 627 14255 182 18 20 chr9 5534850 5537843 -118538329 - ETnERV2-int LTR ERVK -1179 6227 1660 4 627 3926 280 40 28 chr9 5537931 5539763 -118536409 - ETnERV2-int LTR ERVK -3653 2514 796 4 627 252 253 13 0 chr9 5539763 5539842 -118536330 - Lx7 LINE L1 -29 7667 7588 4 627 2391 226 53 14 chr9 5539869 5540888 -118535284 - L1_Mur3 LINE L1 -4153 1727 663 4 627 30 0 0 0 chr9 5541162 5541192 -118534980 + AT_rich Low_complexity Low_complexity 1 30 0 5 627 213 412 0 0 chr9 5541397 5541477 -118534695 - MER5A DNA MER1_type -77 112 33 5 627 603 303 18 42 chr9 5541916 5541969 -118534203 - B3 SINE B2 -2 214 166 5 627 5606 97 6 14 chr9 5541969 5542781 -118533391 + RLTR13D1 LTR ERVK 1 806 0 5 627 606 281 31 1 chr9 5542781 5542944 -118533228 - B3A SINE B2 -51 165 3 5 627 519 294 0 34 chr9 5542981 5543129 -118533043 - B1_Mur3 SINE Alu -6 143 1 5 627 249 253 34 112 chr9 5544043 5544132 -118532040 + RLTR9E LTR ERVK 1 82 -286 5 627 479 256 65 53 chr9 5544186 5544355 -118531817 + RLTR9E LTR ERVK 236 406 -3 5 627 306 0 0 0 chr9 5544365 5544399 -118531773 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 627 349 357 32 46 chr9 5545607 5545878 -118530294 + MLT1C LTR MaLR 1 264 -126 5 627 225 65 0 0 chr9 5546088 5546119 -118530053 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 627 512 30 15 0 chr9 5546191 5546257 -118529915 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 627 22 0 0 0 chr9 5546437 5546459 -118529713 + AT_rich Low_complexity Low_complexity 1 22 0 6 627 553 182 8 32 chr9 5546610 5546735 -118529437 - Lx7 LINE L1 0 7696 7575 6 627 1159 82 0 0 chr9 5546833 5546980 -118529192 + B1_Mm SINE Alu 1 147 0 6 627 7076 130 28 9 chr9 5547033 5548470 -118527702 - Lx3A LINE L1 -809 6172 4706 6 627 3231 78 21 87 chr9 5548470 5548986 -118527186 - RLTR45 LTR ERVK 0 482 1 6 627 9885 51 0 1 chr9 5548986 5550199 -118525973 - RLTR45-int LTR ERVK 0 7244 6072 6 627 8350 37 2 5 chr9 5550221 5551232 -118524940 - RLTR45-int LTR ERVK -1172 6072 5065 6 627 3944 83 30 31 chr9 5551225 5551833 -118524339 - RLTR45-int LTR ERVK -3258 3986 3380 6 627 11528 41 48 7 chr9 5551803 5553619 -118522553 - RLTR45-int LTR ERVK -4032 3212 1322 6 627 264 256 22 22 chr9 5553914 5554006 -118522166 - MMTV-int LTR ERVK -4749 2504 2413 6 627 1150 43 0 0 chr9 5554405 5554543 -118521629 - RLTR45-int LTR ERVK -6426 818 681 6 627 4292 74 107 17 chr9 5554841 5555476 -118520696 - RLTR45-int LTR ERVK -6552 692 1 6 627 3241 79 21 78 chr9 5555476 5555987 -118520185 - RLTR45 LTR ERVK 0 482 1 6 627 7714 107 31 15 chr9 5555988 5556063 -118520109 - L1_Mur1 LINE L1 -1176 4710 4638 6 627 410 0 0 20 chr9 5556063 5556114 -118520058 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 627 9926 104 35 11 chr9 5556114 5557686 -118518486 - L1_Mur1 LINE L1 -1249 4637 3026 6 627 1971 164 92 5 chr9 5557686 5558054 -118518118 + RLTR9D LTR ERVK 1 400 -3 6 627 8955 153 5 2 chr9 5558054 5559618 -118516554 - L1_Mur1 LINE L1 -2856 3030 1462 6 627 2202 191 10 56 chr9 5559612 5560172 -118516000 - L1_Mur1 LINE L1 -6093 891 10 6 627 2079 236 86 50 chr9 5560172 5560505 -118515667 - Lx7 LINE L1 -1509 6187 5822 7 627 995 152 6 0 chr9 5560505 5560682 -118515490 - Lx3_Mus LINE L1 -9 7000 6823 7 627 2079 201 84 39 chr9 5560682 5561186 -118514986 - Lx7 LINE L1 -59 5821 5297 7 627 5562 199 36 87 chr9 5561180 5561716 -118514456 - Lx7 LINE L1 -1400 4480 3916 7 627 216 86 0 0 chr9 5561716 5561751 -118514421 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 627 5562 199 36 87 chr9 5561751 5561815 -118514357 - Lx7 LINE L1 -1965 3915 3855 7 627 231 36 0 0 chr9 5561815 5561843 -118514329 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 627 5562 199 36 87 chr9 5561843 5562637 -118513535 - Lx7 LINE L1 -2026 3854 3122 7 627 2284 133 19 3 chr9 5562637 5563006 -118513166 - Lx2B LINE L1 -6 6994 6620 7 627 5562 199 36 87 chr9 5563006 5563148 -118513024 - Lx7 LINE L1 -2759 3121 2982 7 627 273 119 0 0 chr9 5563148 5563190 -118512982 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 627 5562 199 36 87 chr9 5563190 5563325 -118512847 - Lx7 LINE L1 -2899 2981 2876 7 627 906 116 0 0 chr9 5563325 5563463 -118512709 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 7 627 5562 199 36 87 chr9 5563463 5563579 -118512593 - Lx7 LINE L1 -3005 2875 2779 7 627 483 208 242 19 chr9 5563602 5563759 -118512413 - Lx7 LINE L1 -3634 2246 2055 7 627 687 206 0 0 chr9 5563764 5563944 -118512228 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 627 442 161 107 0 chr9 5563992 5564104 -118512068 - Lx7 LINE L1 -3832 2048 1925 7 627 1277 94 0 0 chr9 5565012 5565192 -118510980 - L1_Mur1 LINE L1 -1827 4059 3880 7 627 471 329 29 23 chr9 5565619 5565790 -118510382 + ID_B1 SINE B4 49 220 -4 7 627 2933 81 5 10 chr9 5566079 5566477 -118509695 + MTA_Mm LTR MaLR 1 396 0 8 627 249 244 22 15 chr9 5566542 5566610 -118509562 - PB1D10 SINE Alu -64 85 14 8 627 184 220 30 119 chr9 5566653 5566720 -118509452 + MIRc SINE MIR 108 168 -100 8 627 4410 83 3 0 chr9 5567145 5567725 -118508447 - L1_Mus2 LINE L1 -2 6564 5983 8 627 605 43 48 0 chr9 5567725 5567819 -118508353 + L1_Mus2 LINE L1 5897 5994 -660 8 627 240 283 21 42 chr9 5567888 5568032 -118508140 - L1MC2 LINE L1 -108 6236 6096 8 627 9753 110 12 4 chr9 5568038 5569128 -118507044 - Lx3_Mus LINE L1 0 7009 5909 8 627 189 0 0 0 chr9 5569128 5569149 -118507023 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 8 627 12805 162 109 5 chr9 5569149 5569780 -118506392 - Lx3_Mus LINE L1 -1101 5908 5278 8 627 240 86 0 0 chr9 5569780 5569815 -118506357 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 627 18249 140 84 5 chr9 5569815 5571105 -118505067 - Lx3_Mus LINE L1 -606 5277 3252 8 627 357 43 0 0 chr9 5571105 5571152 -118505020 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 8 627 18249 132 65 15 chr9 5571152 5573977 -118502195 - Lx3_Mus LINE L1 -2632 3254 5 8 627 337 313 89 84 chr9 5574086 5574323 -118501849 - L1MC2 LINE L1 -362 5982 5745 8 627 265 324 82 90 chr9 5574362 5574466 -118501706 + RSINE1 SINE B4 43 146 -19 9 627 405 39 0 0 chr9 5574466 5574517 -118501655 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 627 265 324 82 90 chr9 5574517 5574534 -118501638 + RSINE1 SINE B4 147 163 -2 9 627 307 388 0 8 chr9 5574637 5574759 -118501413 + B3A SINE B2 1 121 -77 9 627 25 0 0 0 chr9 5574806 5574831 -118501341 + AT_rich Low_complexity Low_complexity 1 25 0 9 627 835 228 286 12 chr9 5575032 5575361 -118500811 + MTD LTR MaLR 1 419 0 9 627 22 0 0 0 chr9 5575581 5575603 -118500569 + AT_rich Low_complexity Low_complexity 1 22 0 9 627 353 306 51 22 chr9 5576018 5576155 -118500017 - ID_B1 SINE B4 0 224 84 9 627 535 15 0 0 chr9 5576561 5576626 -118499546 + B1_Mm SINE Alu 74 138 -9 9 627 201 94 0 0 chr9 5576636 5576668 -118499504 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 9 627 180 0 0 0 chr9 5576669 5576689 -118499483 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 9 627 4293 161 114 78 chr9 5576954 5577243 -118498929 + RLTR25A LTR ERVK 63 336 -767 1 627 1260 27 0 0 chr9 5577243 5577390 -118498782 - B1_Mm SINE Alu 0 147 1 1 627 4293 161 114 78 chr9 5577390 5578083 -118498089 + RLTR25A LTR ERVK 337 1089 -14 1 627 2811 88 24 118 chr9 5578083 5578615 -118497557 - RLTR45 LTR ERVK 0 482 1 1 627 4293 161 114 78 chr9 5578615 5578635 -118497537 + RLTR25A LTR ERVK 1090 1103 0 1 627 22 35 0 0 chr9 5581312 5581341 -118494831 + AT_rich Low_complexity Low_complexity 1 29 0 1 627 446 339 72 5 chr9 5582608 5582801 -118493371 + MLT1D LTR MaLR 288 493 -12 1 627 32 0 0 0 chr9 5582924 5582956 -118493216 + AT_rich Low_complexity Low_complexity 1 32 0 1 627 237 65 0 0 chr9 5582969 5583000 -118493172 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 627 486 306 81 34 chr9 5583007 5583156 -118493016 - RSINE1 SINE B4 -2 163 8 1 627 739 315 100 28 chr9 5583158 5583687 -118492485 - Charlie1a DNA MER1_type -819 636 70 1 627 193 341 12 0 chr9 5584231 5584316 -118491856 - L3 LINE CR1 -1118 3371 3286 1 627 659 183 167 0 chr9 5585416 5585596 -118490576 + Lx3B LINE L1 6763 6972 -1 1 627 21 36 0 0 chr9 5585618 5585646 -118490526 + AT_rich Low_complexity Low_complexity 1 28 0 1 627 521 328 41 6 chr9 5585755 5585920 -118490252 + B3A SINE B2 3 173 -25 1 627 3426 160 76 30 chr9 5585920 5586920 -118489252 - RLTR13D1 LTR ERVK 0 1023 1 1 627 11786 170 111 16 chr9 5588289 5592044 -118484128 - Lx2 LINE L1 -2 6995 2847 1 627 3489 203 53 32 chr9 5592019 5593274 -118482898 - L1VL2 LINE L1 -2267 1348 71 1 627 48 53 0 0 chr9 5593572 5593648 -118482524 + AT_rich Low_complexity Low_complexity 1 76 0 1 627 312 309 0 0 chr9 5593680 5593764 -118482408 + Lx8 LINE L1 7012 7095 -378 1 627 2840 208 87 9 chr9 5593904 5594550 -118481622 + Lx3C LINE L1 6279 6974 -2 1 627 329 310 48 79 chr9 5594993 5595182 -118480990 + RLTR41 LTR ERV1 264 446 0 1 627 30 27 0 0 chr9 5595705 5595742 -118480430 + AT_rich Low_complexity Low_complexity 1 37 0 1 627 629 303 108 53 chr9 5596544 5596885 -118479287 + MTEa LTR MaLR 11 370 -9 1 627 898 140 21 0 chr9 5598226 5598369 -118477803 - B1_Mus1 SINE Alu -1 147 2 1 627 5369 120 8 47 chr9 5598542 5599465 -118476707 + RMER17D LTR ERVK 1 887 -2 1 627 362 336 186 30 chr9 5600235 5600471 -118475701 - B4A SINE B4 -6 286 14 1 627 287 221 103 11 chr9 5600756 5600843 -118475329 - BC1_Mm scRNA scRNA -52 100 6 1 627 189 132 0 0 chr9 5601520 5601558 -118474614 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 627 215 211 0 0 chr9 5601558 5601596 -118474576 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 627 347 223 9 0 chr9 5601602 5601714 -118474458 + GA-rich Low_complexity Low_complexity 2 114 0 1 627 327 291 82 48 chr9 5602631 5602837 -118473335 - MTD LTR MaLR -201 218 6 1 627 1166 116 15 36 chr9 5603057 5603253 -118472919 - B2_Mm1a SINE B2 0 193 2 1 627 185 222 0 16 chr9 5604721 5604785 -118471387 + CT-rich Low_complexity Low_complexity 6 68 0 1 627 426 39 0 0 chr9 5604798 5604850 -118471322 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 627 237 108 0 0 chr9 5604851 5604888 -118471284 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 627 348 105 26 13 chr9 5604887 5604964 -118471208 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 627 258 329 127 90 chr9 5604987 5605246 -118470926 - B4A SINE B4 -16 276 2 1 627 214 338 0 53 chr9 5605321 5605396 -118470776 + ID4_ SINE ID 2 72 -11 1 627 189 0 0 0 chr9 5605398 5605419 -118470753 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 1 627 495 264 148 21 chr9 5605844 5606080 -118470092 + RLTR10A LTR ERVK 146 411 0 1 627 288 70 0 0 chr9 5606270 5606313 -118469859 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 1 627 317 140 62 20 chr9 5606574 5606720 -118469452 + (TAGA)n Simple_repeat Simple_repeat 4 155 0 1 627 205 245 50 20 chr9 5606731 5606831 -118469341 + (TAGA)n Simple_repeat Simple_repeat 1 103 0 1 627 364 146 9 212 chr9 5606835 5606892 -118469280 - ORR1B2 LTR MaLR -8 359 317 1 627 6413 40 0 0 chr9 5606892 5607657 -118468515 - L1Md_F3 LINE L1 0 6584 5820 1 627 364 146 9 212 chr9 5607657 5607712 -118468460 - ORR1B2 LTR MaLR -51 316 270 1 627 1540 229 59 6 chr9 5607684 5608022 -118468150 - ORR1B2 LTR MaLR -7 360 5 1 627 520 317 116 73 chr9 5608097 5608400 -118467772 - MLT2B1 LTR ERVL -239 317 2 1 627 1084 71 43 0 chr9 5608755 5608896 -118467276 + B1_Mm SINE Alu 1 147 0 1 627 2377 101 0 0 chr9 5612292 5612618 -118463554 - IAPEY2_LTR LTR ERVK 0 357 32 1 627 5417 100 4 8 chr9 5612628 5613407 -118462765 - IAPEy-int LTR ERVK -3 7510 6735 1 627 3477 82 0 4 chr9 5613397 5613853 -118462319 - IAPEy-int LTR ERVK -1367 6214 5761 1 627 3299 91 0 16 chr9 5613844 5614292 -118461880 - IAPEy-int LTR ERVK -1939 5642 5202 1 627 378 0 0 0 chr9 5614294 5614336 -118461836 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 627 1296 44 0 0 chr9 5614336 5614496 -118461676 - B2_Mm1t SINE B2 -33 160 1 1 627 581 62 24 12 chr9 5614785 5614867 -118461305 - IAPEy-int LTR ERVK -2932 4649 4567 1 627 358 93 37 0 chr9 5614866 5614920 -118461252 - IAPEy-int LTR ERVK -3784 3622 3567 1 627 635 193 0 8 chr9 5614946 5615066 -118461106 - IAPEy-int LTR ERVK -4653 2753 2635 1 627 448 239 88 0 chr9 5615182 5615295 -118460877 - RMER16-int LTR ERVK -5077 1060 938 1 627 1684 176 107 48 chr9 5615300 5615781 -118460391 - RMER16-int LTR ERVK -4750 656 251 1 627 975 150 63 5 chr9 5615893 5616254 -118459918 - IAPEy-int LTR ERVK -6629 952 409 1 627 306 0 0 0 chr9 5616450 5616484 -118459688 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 627 2382 164 8 66 chr9 5616679 5617161 -118459011 - IAPEy-int LTR ERVK -7059 454 1 1 627 2114 66 76 0 chr9 5617161 5617464 -118458708 - IAPEY2_LTR LTR ERVK 0 357 32 1 627 497 312 86 39 chr9 5617748 5617981 -118458191 + Lx8 LINE L1 7182 7425 -48 1 627 1720 224 9 9 chr9 5617981 5618324 -118457848 + ORR1B1 LTR MaLR 52 394 0 1 627 38 51 0 0 chr9 5619042 5619101 -118457071 + AT_rich Low_complexity Low_complexity 1 59 0 1 627 707 312 39 43 chr9 5619161 5619491 -118456681 + MT2A LTR ERVL 183 576 -8 1 627 1385 170 49 98 chr9 5620062 5620388 -118455784 + ORR1A1 LTR MaLR 6 315 -14 1 627 7119 138 23 13 chr9 5620388 5622410 -118453762 + Lx LINE L1 4605 6652 -2 1 627 375 58 19 0 chr9 5622413 5622465 -118453707 + ORR1A3 LTR MaLR 272 324 -2 1 627 338 229 0 98 chr9 5623010 5623102 -118453070 + MT2B LTR ERVL 158 240 -361 1 627 585 248 31 0 chr9 5623034 5623163 -118453009 + B1_Mur4 SINE Alu 17 149 -1 1 627 227 56 56 0 chr9 5623164 5623200 -118452972 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 1 627 684 288 43 0 chr9 5623261 5623400 -118452772 + B4 SINE B4 143 287 -5 1 627 27 0 0 0 chr9 5623915 5623942 -118452230 + AT_rich Low_complexity Low_complexity 1 27 0 1 627 200 132 26 0 chr9 5624334 5624372 -118451800 + T-rich Low_complexity Low_complexity 3 41 0 1 627 254 304 25 12 chr9 5624982 5625062 -118451110 + ID4_ SINE ID 2 82 -1 1 627 369 0 0 0 chr9 5625872 5625913 -118450259 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 627 498 17 0 0 chr9 5626070 5626129 -118450043 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 627 717 324 66 23 chr9 5626163 5626555 -118449617 - Lx7 LINE L1 -397 7299 6891 1 627 258 315 43 107 chr9 5626664 5626899 -118449273 + MLT1A0 LTR MaLR 156 373 -1 1 627 37 52 0 0 chr9 5627207 5627265 -118448907 + AT_rich Low_complexity Low_complexity 1 58 0 1 627 227 152 68 0 chr9 5628380 5628439 -118447733 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1 627 24 0 0 0 chr9 5630436 5630460 -118445712 + AT_rich Low_complexity Low_complexity 1 24 0 1 627 261 302 11 17 chr9 5631401 5631514 -118444658 + GA-rich Low_complexity Low_complexity 1 112 0 1 627 216 265 0 0 chr9 5631592 5631690 -118444482 + (TA)n Simple_repeat Simple_repeat 1 98 0 1 627 604 276 46 21 chr9 5632849 5633093 -118443079 - Lx4B LINE L1 -5 7053 6722 1 627 21 0 0 0 chr9 5633095 5633116 -118443056 + AT_rich Low_complexity Low_complexity 1 21 0 1 627 30 105 0 0 chr9 5635968 5636082 -118440090 + AT_rich Low_complexity Low_complexity 1 114 0 1 628 286 261 196 6 chr9 5636116 5636274 -118439898 + L1MC LINE L1 3980 4167 -1979 1 628 234 0 0 0 chr9 5636292 5636318 -118439854 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1 628 3950 83 2 0 chr9 5636321 5636841 -118439331 - L1_Mus1 LINE L1 -9 6558 6038 1 628 3534 87 8 0 chr9 5636841 5637546 -118438626 + L1_Mus1 LINE L1 5351 6060 -507 1 628 509 306 64 23 chr9 5637810 5638155 -118438017 + L1MC LINE L1 4471 4829 -1317 1 628 627 238 7 27 chr9 5638388 5638535 -118437637 + B1_Mur4 SINE Alu 5 148 -2 1 628 252 224 0 0 chr9 5638543 5638610 -118437562 + GA-rich Low_complexity Low_complexity 2 68 0 1 628 308 259 97 19 chr9 5638640 5638856 -118437316 + L1M5 LINE L1 5254 5486 -693 1 628 380 198 40 19 chr9 5638937 5639022 -118437150 + B4 SINE B4 194 276 -16 1 628 1926 137 77 89 chr9 5639318 5639799 -118436373 - IAPLTR2_Mm LTR ERVK 0 475 1 1 628 475 321 79 54 chr9 5640503 5640780 -118435392 + MLT1H LTR MaLR 5 288 -261 1 628 204 184 0 0 chr9 5641227 5641276 -118434896 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 628 1278 152 56 13 chr9 5641587 5641850 -118434322 + RLTR10E LTR ERVK 42 388 -2 1 628 392 256 29 126 chr9 5641852 5642058 -118434114 + IAPEY3-int LTR ERVK 1 186 -7494 1 628 11119 229 33 5 chr9 5642054 5644667 -118431505 + IAPEY3-int LTR ERVK 535 3239 -4441 1 628 996 228 54 49 chr9 5644738 5645125 -118431047 + Lx4A LINE L1 882 1270 -5816 1 628 467 107 0 13 chr9 5645127 5645141 -118431031 + (GAAA)n Simple_repeat Simple_repeat 2 15 0 1 628 1127 82 0 0 chr9 5645141 5645288 -118430884 + B1_Mus2 SINE Alu 1 147 0 1 628 467 107 0 13 chr9 5645288 5645349 -118430823 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 1 628 8391 189 53 120 chr9 5645349 5645580 -118430592 + Lx4A LINE L1 1243 1489 -4388 1 628 444 111 0 0 chr9 5645580 5645652 -118430520 + (TAG)n Simple_repeat Simple_repeat 1 72 0 1 628 8391 189 53 120 chr9 5645652 5646173 -118429999 + Lx4A LINE L1 1490 2048 -3829 1 628 225 0 0 0 chr9 5646173 5646198 -118429974 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 628 8391 189 53 120 chr9 5646198 5648098 -118428074 + Lx4A LINE L1 2049 3718 -2159 1 628 4279 152 157 8 chr9 5648089 5648713 -118427459 + Lx LINE L1 351 1101 -5533 1 628 2514 63 42 0 chr9 5648713 5649045 -118427127 - ORR1A1 LTR MaLR 0 346 1 1 628 21844 174 65 15 chr9 5649045 5649761 -118426411 + Lx LINE L1 1102 1821 -4062 1 628 1514 171 92 0 chr9 5649761 5650065 -118426107 + IAPEY3_LTR LTR ERVK 1 332 0 1 628 21844 174 26 17 chr9 5650065 5654842 -118421330 + Lx LINE L1 1822 6648 -6 1 628 8838 192 58 31 chr9 5654829 5656481 -118419691 + Lx4A LINE L1 3725 5448 -429 1 628 1014 69 20 20 chr9 5656481 5656628 -118419544 + B1_Mus2 SINE Alu 1 147 0 1 628 8838 174 139 24 chr9 5656628 5657120 -118419052 + Lx4A LINE L1 5449 5952 -1106 1 628 1170 42 0 0 chr9 5657396 5657540 -118418632 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 1 628 2520 102 0 3 chr9 5657749 5658113 -118418059 - L1_Mus1 LINE L1 -5 6562 6200 1 628 513 207 18 0 chr9 5658117 5658228 -118417944 - L1Md_F LINE L1 -5779 740 628 2 628 440 270 16 8 chr9 5658229 5658356 -118417816 - L1Md_F LINE L1 -5814 705 578 2 628 330 330 39 37 chr9 5658352 5658606 -118417566 - L1VL1 LINE L1 -5900 522 85 2 628 1792 138 6 56 chr9 5658766 5659105 -118417067 - RLTRETN_Mm LTR ERVK 0 322 1 2 628 8130 112 32 32 chr9 5659105 5660463 -118415709 - MMETn-int LTR ERVK 0 4844 3486 2 628 23322 64 2 27 chr9 5660497 5663718 -118412454 - MMETn-int LTR ERVK -1703 3141 2 2 628 1785 134 6 56 chr9 5663719 5664058 -118412114 - RLTRETN_Mm LTR ERVK 0 322 1 2 628 375 272 32 106 chr9 5664061 5664250 -118411922 - L1VL1 LINE L1 -6056 366 192 2 628 1082 257 67 18 chr9 5664616 5664901 -118411271 + Lx5 LINE L1 6751 7049 -1 2 628 601 286 0 62 chr9 5665185 5665394 -118410778 - B3A SINE B2 -2 196 1 2 628 29 0 0 0 chr9 5665398 5665427 -118410745 + AT_rich Low_complexity Low_complexity 1 29 0 2 628 364 312 50 50 chr9 5665474 5665734 -118410438 - L1MC1 LINE L1 -102 6231 5972 2 628 2123 218 26 128 chr9 5666107 5666787 -118409385 + RMER19C LTR ERVK 1 611 0 2 628 418 375 0 70 chr9 5667330 5667479 -118408693 + RSINE1 SINE B4 6 148 -17 2 628 309 109 0 0 chr9 5667479 5667534 -118408638 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 628 387 0 0 0 chr9 5667534 5667576 -118408596 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 628 418 375 0 70 chr9 5667576 5667597 -118408575 + RSINE1 SINE B4 149 164 -1 2 628 470 331 137 35 chr9 5668848 5669192 -118406980 - MTE2a LTR MaLR 0 379 1 2 628 200 94 31 0 chr9 5670018 5670050 -118406122 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2 628 708 346 24 51 chr9 5670861 5671156 -118405016 + B4 SINE B4 1 287 -5 2 628 1528 243 34 12 chr9 5671158 5671566 -118404606 - MTD LTR MaLR 0 419 3 2 628 317 310 28 70 chr9 5671987 5672365 -118403807 - RLTR15 LTR ERVK -18 341 33 2 628 759 354 14 18 chr9 5672881 5673157 -118403015 + B4A SINE B4 6 280 -12 2 628 414 167 0 0 chr9 5673214 5673322 -118402850 + CT-rich Low_complexity Low_complexity 1 108 0 2 628 28742 118 11 5 chr9 5674590 5680903 -118395269 - L1_Mus2 LINE L1 -1 6565 218 2 628 1107 194 23 9 chr9 5681345 5681563 -118394609 - URR1B DNA MER1_type 0 225 5 2 628 2825 103 59 7 chr9 5681793 5682234 -118393938 + Lx3A LINE L1 6510 6973 -8 2 628 367 359 70 41 chr9 5682274 5682544 -118393628 - MLT1A0 LTR MaLR 0 374 97 2 628 559 212 58 12 chr9 5682567 5682739 -118393433 - Lx9 LINE L1 -8 7636 7457 2 628 1051 79 6 58 chr9 5683588 5683762 -118392410 + LTRIS2 LTR ERV1 400 564 0 2 628 286 83 0 20 chr9 5684199 5684248 -118391924 + RLTR45-int LTR ERVK 141 188 -5218 2 628 5849 149 49 31 chr9 5684256 5685366 -118390806 + RLTR45-int LTR ERVK 1393 2522 -4884 2 628 580 227 73 15 chr9 5685366 5685542 -118390630 - RMER16 LTR ERVK -306 227 1 2 628 1347 194 14 11 chr9 5685561 5685837 -118390335 + RLTR45-int LTR ERVK 3745 4021 -3385 2 628 6494 123 50 72 chr9 5685836 5687106 -118389066 + RLTR45-int LTR ERVK 4666 5907 -1337 2 628 1133 104 38 19 chr9 5687126 5687336 -118388836 + RLTR45-int LTR ERVK 5894 6071 -1173 2 628 1415 139 80 0 chr9 5687337 5687574 -118388598 + ETnERV3-int LTR ERVK 5529 5784 -24 2 628 4904 89 22 1 chr9 5687582 5688266 -118387906 + RLTR13D5 LTR ERVK 1 698 -325 2 628 381 292 0 0 chr9 5688607 5688727 -118387445 + RNERVK23-int LTR ERVK 7642 7761 -456 2 628 478 322 7 7 chr9 5688829 5688976 -118387196 + ETnERV2-int LTR ERVK 6500 6646 -760 2 628 25 31 0 0 chr9 5689763 5689795 -118386377 + AT_rich Low_complexity Low_complexity 1 32 0 2 628 3948 114 59 0 chr9 5689795 5690401 -118385771 - L1_Mus3 LINE L1 -8 6630 5989 2 628 416 240 24 8 chr9 5690422 5690548 -118385624 - Lx9 LINE L1 -216 7428 7301 2 628 21 0 0 0 chr9 5690596 5690617 -118385555 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 222 337 11 46 chr9 5690617 5690704 -118385468 - RSINE1 SINE B4 -2 163 80 2 628 2911 49 2 74 chr9 5690794 5691212 -118384960 + RLTR10 LTR ERVK 1 388 -2 2 628 313 200 21 21 chr9 5691281 5691378 -118384794 - Lx6 LINE L1 0 7460 7364 2 628 180 83 62 0 chr9 5691431 5691479 -118384693 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 628 2858 83 29 14 chr9 5692354 5692769 -118383403 - BGLII LTR ERVK 0 421 1 2 628 391 304 29 36 chr9 5693223 5693363 -118382809 + Lx7 LINE L1 6964 7102 -594 2 628 6825 31 0 18 chr9 5693397 5694215 -118381957 + RLTR13B4 LTR ERVK 1 803 0 2 628 298 311 29 57 chr9 5694948 5695088 -118381084 - MIRb SINE MIR -2 266 131 2 628 285 265 0 0 chr9 5695127 5695210 -118380962 + CT-rich Low_complexity Low_complexity 2 84 0 2 628 20917 122 75 23 chr9 5695247 5697120 -118379052 - L1_Mus3 LINE L1 -8 6630 4742 2 628 249 43 42 21 chr9 5697120 5697168 -118379004 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2 628 20917 133 140 45 chr9 5697168 5697676 -118378496 - L1_Mus3 LINE L1 -1142 4741 4208 2 628 606 28 0 0 chr9 5697676 5697748 -118378424 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 628 20917 127 124 48 chr9 5697748 5700550 -118375622 - L1_Mus3 LINE L1 -1676 4207 1048 2 628 5073 131 27 26 chr9 5700550 5701436 -118374736 + RMER17D LTR ERVK 1 887 -2 2 628 3338 80 2 66 chr9 5701436 5701661 -118374511 - L1_Mus3 LINE L1 -5591 1047 834 2 628 27608 106 39 7 chr9 5701654 5703997 -118372175 + Lx3_Mus LINE L1 1430 3899 -1987 2 628 207 0 0 0 chr9 5703997 5704020 -118372152 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 628 27608 106 39 7 chr9 5704020 5705363 -118370809 + Lx3_Mus LINE L1 3900 5264 -622 2 628 363 23 0 0 chr9 5705363 5705407 -118370765 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 628 27608 106 39 7 chr9 5705407 5705693 -118370479 + Lx3_Mus LINE L1 5265 5538 -348 2 628 3331 157 34 62 chr9 5705693 5706462 -118369710 - RMER17A LTR ERVK -2 749 3 2 628 27608 124 40 3 chr9 5706462 5707886 -118368286 + Lx3_Mus LINE L1 5539 7009 0 2 628 205 214 18 0 chr9 5707893 5707949 -118368223 + A-rich Low_complexity Low_complexity 4 60 0 2 628 180 77 0 0 chr9 5707977 5708003 -118368169 + (TA)n Simple_repeat Simple_repeat 1 26 0 2 628 637 45 11 11 chr9 5708032 5708122 -118368050 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 628 255 310 10 94 chr9 5708434 5708626 -118367546 + Tigger5 DNA MER2_type 2134 2309 -97 2 628 2601 243 71 46 chr9 5708844 5709386 -118366786 + RLTR40 LTR ERVK 1 578 -239 2 628 531 0 0 0 chr9 5709386 5709445 -118366727 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 628 2601 243 71 46 chr9 5709445 5709691 -118366481 + RLTR40 LTR ERVK 579 809 -8 2 628 32 67 0 0 chr9 5710927 5710987 -118365185 + AT_rich Low_complexity Low_complexity 1 60 0 2 628 303 113 0 0 chr9 5712499 5712552 -118363620 + (T)n Simple_repeat Simple_repeat 1 53 0 2 628 1147 68 7 0 chr9 5712552 5712698 -118363474 - B1_Mus1 SINE Alu 0 148 2 2 628 6493 75 5 0 chr9 5713002 5713854 -118362318 + L1_Mus1 LINE L1 5709 6564 -3 2 628 614 335 20 44 chr9 5714703 5715000 -118361172 + B4 SINE B4 3 292 0 2 628 658 260 10 188 chr9 5715694 5716007 -118360165 - MTC-int LTR MaLR -960 298 65 2 628 659 302 66 26 chr9 5716025 5716299 -118359873 - MTD LTR MaLR -6 353 19 2 628 270 333 107 39 chr9 5716793 5716971 -118359201 + RMER13A LTR ERVK 14 203 -657 2 628 7505 74 4 4 chr9 5717813 5718800 -118357372 - L1Md_F2 LINE L1 0 6582 5596 2 628 5828 143 36 42 chr9 5719793 5721558 -118354614 - L1Md_F LINE L1 -3742 2141 388 2 628 240 316 92 0 chr9 5721859 5721957 -118354215 - Lx9 LINE L1 -1680 5964 5858 2 628 446 254 370 4 chr9 5722506 5722778 -118353394 - ORR1D1 LTR MaLR -14 370 1 2 628 921 49 0 0 chr9 5723132 5723254 -118352918 - L1_Mus1 LINE L1 0 6567 6446 2 628 1575 194 18 49 chr9 5723513 5723957 -118352215 - RMER17C LTR ERVK -519 439 16 2 628 28 71 0 0 chr9 5723967 5724023 -118352149 + AT_rich Low_complexity Low_complexity 1 56 0 2 628 357 62 0 0 chr9 5724528 5724576 -118351596 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 628 7214 79 0 0 chr9 5725168 5726278 -118349894 - L1VL1 LINE L1 -3666 2217 1108 2 628 438 375 76 0 chr9 5726422 5726606 -118349566 - ID_B1 SINE B4 -18 206 9 2 628 391 295 23 74 chr9 5726681 5726897 -118349275 - L1MEf LINE L1 -5175 1025 821 2 628 962 183 0 22 chr9 5726911 5727095 -118349077 + L1_Mur3 LINE L1 5602 5781 -99 2 628 513 248 51 0 chr9 5727105 5727222 -118348950 + B1_Mus1 SINE Alu 2 124 -24 2 628 252 0 0 0 chr9 5727231 5727259 -118348913 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 628 21 36 0 0 chr9 5727374 5727402 -118348770 + AT_rich Low_complexity Low_complexity 1 28 0 2 628 1031 220 24 131 chr9 5727402 5727784 -118348388 + Lx7 LINE L1 7356 7696 0 2 628 466 290 16 114 chr9 5727945 5728162 -118348010 + B3A SINE B2 2 203 -13 2 628 629 247 110 5 chr9 5728186 5728377 -118347795 + B3 SINE B2 1 211 -5 2 628 1970 224 47 2 chr9 5729999 5730425 -118345747 - Lx7 LINE L1 -578 7118 6674 2 628 4387 222 140 32 chr9 5730419 5730702 -118345470 - Lx7 LINE L1 -1969 5727 5440 2 628 876 46 0 0 chr9 5730702 5730811 -118345361 + (TTCTC)n Simple_repeat Simple_repeat 1 109 0 2 628 5756 114 24 32 chr9 5730811 5731837 -118344335 - Lx7 LINE L1 -441 5439 4260 2 628 5799 127 42 74 chr9 5731837 5732941 -118343231 + Lx3_Mus LINE L1 5941 7008 -1 2 628 422 291 34 17 chr9 5733471 5733590 -118342582 - MTE2a LTR MaLR -45 334 214 2 628 376 328 34 10 chr9 5733623 5733763 -118342409 + MTE2a LTR MaLR 216 351 -28 2 628 15538 170 44 8 chr9 5733763 5736057 -118340115 - Lx2B LINE L1 -24 6976 4649 2 628 224 59 29 0 chr9 5736057 5736091 -118340081 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 628 15538 179 70 9 chr9 5736091 5737683 -118338489 - Lx2B LINE L1 -1238 4648 2870 2 628 807 55 0 0 chr9 5737683 5737792 -118338380 + (TTTC)n Simple_repeat Simple_repeat 2 110 0 2 628 15538 179 70 9 chr9 5737792 5738252 -118337920 - Lx2B LINE L1 -3017 2869 2410 2 628 2437 232 58 11 chr9 5738323 5739301 -118336871 + L1_Mur2 LINE L1 938 1962 -3924 2 628 21 0 0 0 chr9 5740166 5740187 -118335985 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 909 302 85 53 chr9 5740643 5740979 -118335193 + RLTR18B LTR ERVK 13 339 -277 2 628 216 0 0 0 chr9 5740979 5741003 -118335169 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 628 909 282 110 3 chr9 5741003 5741219 -118334953 + RLTR18B LTR ERVK 215 461 -51 2 628 197 65 32 0 chr9 5741220 5741251 -118334921 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 628 6747 75 4 8 chr9 5741969 5742862 -118333310 + L1_Mm LINE L1 4691 5586 -297 2 628 7727 51 19 3 chr9 5742862 5743839 -118332333 + L1Md_F2 LINE L1 5587 6579 -3 2 628 6747 75 4 8 chr9 5743839 5743851 -118332321 + L1_Mm LINE L1 5587 5593 -290 2 628 238 245 38 0 chr9 5743986 5744039 -118332133 + RLTR18B LTR ERVK 452 506 -6 2 628 805 206 252 3 chr9 5745424 5745758 -118330414 - MTC LTR MaLR -4 417 1 2 628 1012 207 8 33 chr9 5745761 5746006 -118330166 - MTC-int LTR MaLR -3 1255 1017 2 628 412 176 33 33 chr9 5747003 5747156 -118329016 + GA-rich Low_complexity Low_complexity 2 154 0 2 628 677 156 44 8 chr9 5747911 5748041 -118328131 + MTC LTR MaLR 63 224 -197 3 628 570 371 125 0 chr9 5748103 5748335 -118327837 - B4 SINE B4 -6 286 26 3 628 246 333 13 39 chr9 5748763 5748841 -118327331 + L3 LINE CR1 2135 2210 -2279 3 628 583 299 78 100 chr9 5749380 5749740 -118326432 + MTE2a LTR MaLR 28 379 0 3 628 254 295 51 13 chr9 5749856 5749935 -118326237 + B1F1 SINE Alu 10 91 -58 3 628 583 260 255 32 chr9 5750128 5750410 -118325762 - Lx6 LINE L1 -26 7434 7090 3 628 559 75 9 36 chr9 5750665 5750776 -118325396 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 628 531 0 0 0 chr9 5751066 5751125 -118325047 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 628 294 29 0 0 chr9 5751125 5751159 -118325013 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 628 298 410 0 7 chr9 5751800 5751945 -118324227 + MLT1J1 LTR MaLR 5 148 -296 3 628 2967 59 5 3 chr9 5752323 5752713 -118323459 + L1_Mus1 LINE L1 6177 6567 0 3 628 30 27 0 0 chr9 5754477 5754514 -118321658 + AT_rich Low_complexity Low_complexity 1 37 0 3 628 337 271 220 0 chr9 5754609 5754727 -118321445 + B1F2 SINE Alu 1 144 -5 3 628 629 259 74 10 chr9 5756063 5756266 -118319906 + B3 SINE B2 1 216 0 3 628 8313 164 71 72 chr9 5756520 5758508 -118317664 + L1_Mm LINE L1 1932 4139 -1738 3 628 1960 193 55 114 chr9 5758508 5759104 -118317068 - RLTR31_Mm LTR ERVK 0 561 1 3 628 8313 164 71 72 chr9 5759104 5759633 -118316539 + L1_Mm LINE L1 4140 4728 -1149 3 628 288 0 0 0 chr9 5759633 5759665 -118316507 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 628 6973 212 92 169 chr9 5759665 5760351 -118315821 + L1_Mm LINE L1 4729 5440 -437 3 628 544 226 15 0 chr9 5760351 5760488 -118315684 + Lx LINE L1 6509 6647 -7 3 628 264 228 29 186 chr9 5761677 5761817 -118314355 + L1VL1 LINE L1 236 353 -6069 3 628 327 264 66 8 chr9 5761901 5762023 -118314149 + L1Md_F LINE L1 675 803 -5813 3 628 18831 151 8 24 chr9 5762023 5763449 -118312723 + L1Md_F LINE L1 725 2084 -3799 3 628 249 57 0 0 chr9 5763449 5763484 -118312688 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 628 18831 123 5 13 chr9 5763484 5764223 -118311949 + L1Md_F LINE L1 2085 2817 -3066 3 628 1172 61 0 0 chr9 5764223 5764370 -118311802 + B1_Mm SINE Alu 1 147 0 3 628 18831 123 5 13 chr9 5764370 5765855 -118310317 + L1Md_F LINE L1 2818 4283 -1600 3 628 3484 100 6 10 chr9 5765855 5766368 -118309804 + L1Md_F2 LINE L1 6060 6570 -12 3 628 282 148 0 0 chr9 5766434 5766488 -118309684 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 628 22 56 0 0 chr9 5766517 5766553 -118309619 + AT_rich Low_complexity Low_complexity 1 36 0 3 628 394 253 82 31 chr9 5766555 5766714 -118309458 + B2_Mm2 SINE B2 4 170 -25 3 628 255 133 0 0 chr9 5766805 5766850 -118309322 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 629 249 83 0 0 chr9 5769345 5769381 -118306791 + (CCA)n Simple_repeat Simple_repeat 1 36 0 3 629 384 22 0 0 chr9 5771186 5771231 -118304941 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 629 559 306 49 4 chr9 5772328 5772512 -118303660 - B3A SINE B2 -29 187 2 3 629 21 0 0 0 chr9 5772776 5772797 -118303375 + AT_rich Low_complexity Low_complexity 1 21 0 3 629 21 57 0 0 chr9 5773313 5773348 -118302824 + AT_rich Low_complexity Low_complexity 1 35 0 3 629 316 292 21 0 chr9 5773360 5773456 -118302716 + GA-rich Low_complexity Low_complexity 5 102 0 3 629 6029 82 34 27 chr9 5774054 5774944 -118301228 - L1_Mus2 LINE L1 0 6566 5671 3 629 23103 125 34 5 chr9 5774944 5779252 -118296920 - L1_Mus2 LINE L1 -712 5171 725 3 629 374 301 15 0 chr9 5779252 5779388 -118296784 - L1_Mus2 LINE L1 -5804 812 675 3 629 575 301 28 113 chr9 5779424 5779571 -118296601 - L1VL1 LINE L1 -6056 366 124 3 629 222 37 0 0 chr9 5779571 5779598 -118296574 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 629 575 286 24 80 chr9 5779598 5779892 -118296280 - L1VL1 LINE L1 -5928 490 85 3 629 370 269 37 0 chr9 5779886 5780020 -118296152 - Lx2A1 LINE L1 -20 6988 6850 3 629 38538 4 0 0 chr9 5780971 5786538 -118289634 + L1Md_A LINE L1 20 5586 -297 3 629 9000 4 0 0 chr9 5786538 5787534 -118288638 + L1Md_A LINE L1 5587 6582 0 3 629 3353 79 2 2 chr9 5788021 5788464 -118287708 + L1_Mus2 LINE L1 6124 6566 0 3 629 234 352 61 34 chr9 5789094 5789241 -118286931 + LTR73 LTR ERV1 58 208 -364 3 629 330 346 70 32 chr9 5790017 5790175 -118285997 - MLT1A0 LTR MaLR -110 255 92 3 629 216 0 0 0 chr9 5791760 5791784 -118284388 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 629 564 87 0 0 chr9 5792007 5792099 -118284073 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 629 250 341 98 0 chr9 5792363 5792486 -118283686 + MER5A DNA MER1_type 7 141 -48 3 629 798 272 127 13 chr9 5792574 5792890 -118283282 + ORR1E LTR MaLR 4 355 -4 3 629 985 249 53 30 chr9 5793162 5793464 -118282708 + L1_Mus1 LINE L1 816 1124 -5962 3 629 1764 152 37 7 chr9 5793475 5793774 -118282398 - RLTR10E LTR ERVK -3 308 1 3 629 20257 85 7 5 chr9 5793774 5796801 -118279371 - MMERVK10C-int LTR ERVK 0 7680 4623 3 629 745 103 35 56 chr9 5797541 5797685 -118278487 - MMERVK10C-int LTR ERVK -2911 4670 4530 3 629 519 179 10 32 chr9 5797696 5797823 -118278349 - MMERVK10C-int LTR ERVK -2380 2464 2356 3 629 937 138 14 0 chr9 5797823 5797968 -118278204 - ETnERV2-int LTR ERVK -3135 4271 4125 3 629 719 111 19 0 chr9 5797960 5798068 -118278104 - RLTR10-int LTR ERVK -1837 150 41 3 629 2022 136 0 7 chr9 5798083 5798393 -118277779 - RLTR10E LTR ERVK -3 308 1 3 629 4937 168 41 20 chr9 5798398 5799335 -118276837 + L1Md_F LINE L1 170 1125 -5394 3 629 29117 117 10 1 chr9 5799338 5804659 -118271513 + L1_Mus1 LINE L1 1187 6564 -3 3 629 258 32 0 0 chr9 5804659 5804690 -118271482 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 3 629 15662 159 35 42 chr9 5804694 5805534 -118270638 + L1_Mur2 LINE L1 1188 2051 -3826 3 629 267 31 0 0 chr9 5805534 5805566 -118270606 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 629 15662 168 30 50 chr9 5805566 5808241 -118267931 + L1_Mur2 LINE L1 2052 4632 -1245 3 629 1485 189 0 41 chr9 5808371 5808567 -118267605 + L1_Mur2 LINE L1 5451 5635 -242 3 629 3940 138 132 45 chr9 5808567 5809382 -118266790 - RMER17D LTR ERVK -3 886 1 3 629 1485 189 0 41 chr9 5809382 5809477 -118266695 + L1_Mur2 LINE L1 5636 5730 -147 3 629 1117 290 105 51 chr9 5809492 5809867 -118266305 - RLTR20B3 LTR ERVK -24 553 152 3 629 962 17 9 0 chr9 5809867 5809983 -118266189 + (TC)n Simple_repeat Simple_repeat 1 117 0 3 629 1117 290 105 51 chr9 5809983 5810113 -118266059 - RLTR20B3 LTR ERVK -426 151 21 3 629 5089 187 63 11 chr9 5810117 5811299 -118264873 - MYSERV16_I-int LTR ERVK 0 2326 1084 3 629 1081 215 97 11 chr9 5811316 5811584 -118264588 - MYSERV16_I-int LTR ERVK -5595 542 252 3 629 579 179 0 0 chr9 5811585 5811697 -118264475 + MYSERV16_I-int LTR ERVK 1508 1619 -707 3 629 305 214 162 19 chr9 5811732 5811837 -118264335 - RMER4A LTR ERVK -32 434 315 3 629 569 140 0 0 chr9 5811848 5811941 -118264231 + MYSERV16_I-int LTR ERVK 190 282 -2044 3 629 826 124 8 0 chr9 5811942 5812071 -118264101 + Lx5 LINE L1 5730 5859 -1191 3 629 3503 228 53 1 chr9 5812066 5812804 -118263368 + Lx5 LINE L1 6272 7047 -3 3 629 233 296 31 44 chr9 5813051 5813210 -118262962 - L1MD3 LINE L1 -1981 6014 5858 3 629 885 296 204 33 chr9 5814737 5815306 -118260866 - RMER13A LTR ERVK -99 761 96 3 629 3188 173 50 15 chr9 5815858 5816464 -118259708 - RLTR26 LTR ERVK 0 642 16 3 629 696 161 20 0 chr9 5816939 5817089 -118259083 + RMER16 LTR ERVK 1 280 -253 3 629 329 167 0 0 chr9 5817084 5817138 -118259034 + RMER16 LTR ERVK 480 533 0 3 629 23376 123 53 45 chr9 5817138 5821205 -118254967 + RMER16-int LTR ERVK 1 4096 -1310 3 629 431 273 17 64 chr9 5821492 5821664 -118254508 + RNLTR23 LTR ERVK 479 642 0 3 629 8669 108 20 9 chr9 5821666 5822089 -118254083 + RMER16-int LTR ERVK 4093 4517 -889 3 629 1044 151 0 0 chr9 5822089 5822268 -118253904 + GA-rich Low_complexity Low_complexity 2 180 0 3 629 8669 108 20 9 chr9 5822268 5823144 -118253028 + RMER16-int LTR ERVK 4518 5405 -1 3 629 3064 141 13 50 chr9 5823144 5823698 -118252474 + RMER16 LTR ERVK 1 533 0 3 629 1044 269 123 43 chr9 5823702 5824051 -118252121 + RMER2 LTR ERV1 191 567 0 3 629 5798 135 16 28 chr9 5824138 5825108 -118251064 + RMER17B LTR ERVK 1 958 0 3 629 1874 224 107 32 chr9 5826145 5826670 -118249502 + RMER2 LTR ERV1 4 567 0 3 629 405 39 0 0 chr9 5826854 5826905 -118249267 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 629 1762 105 4 4 chr9 5826959 5827217 -118248955 - L1_Mus2 LINE L1 -3 6563 6306 3 629 394 345 7 33 chr9 5827826 5827976 -118248196 - RMER12 LTR ERVK -101 1221 1076 3 629 879 159 7 13 chr9 5827969 5828122 -118248050 - B2_Mm2 SINE B2 -26 169 18 3 629 304 242 10 31 chr9 5828134 5828232 -118247940 - Lx4B LINE L1 -5 7053 6958 3 629 235 203 0 169 chr9 5828271 5828342 -118247830 - RMER12 LTR ERVK -261 1061 1003 3 629 405 0 0 0 chr9 5828383 5828428 -118247744 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 629 352 239 0 0 chr9 5828428 5828499 -118247673 - RMER12 LTR ERVK -434 888 818 3 629 547 217 6 89 chr9 5828470 5828627 -118247545 - RLTR22_Mur LTR ERVK -511 1337 1194 3 629 1327 253 65 36 chr9 5828872 5829478 -118246694 - RMER12 LTR ERVK -591 813 1 3 629 307 325 31 16 chr9 5829478 5829605 -118246567 + MLT1L LTR MaLR 154 282 -328 3 629 745 84 8 8 chr9 5829894 5830014 -118246158 + (TA)n Simple_repeat Simple_repeat 1 120 0 3 629 285 309 83 65 chr9 5830123 5830400 -118245772 - MER33 DNA MER1_type -36 288 7 3 629 725 196 29 0 chr9 5832223 5832361 -118243811 - B1_Mur4 SINE Alu -7 143 2 3 629 294 29 0 0 chr9 5832985 5833020 -118243152 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 629 38 0 0 0 chr9 5834092 5834130 -118242042 + AT_rich Low_complexity Low_complexity 1 38 0 3 629 327 313 120 10 chr9 5834460 5834732 -118241440 - L1MA5 LINE L1 -364 5936 5627 3 629 387 0 0 0 chr9 5834734 5834777 -118241395 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 629 421 299 116 84 chr9 5835318 5835533 -118240639 + B4A SINE B4 5 226 -66 3 629 183 100 0 0 chr9 5835576 5835606 -118240566 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 629 297 128 0 0 chr9 5835758 5835805 -118240367 + (T)n Simple_repeat Simple_repeat 1 47 0 3 629 23 0 0 0 chr9 5835811 5835834 -118240338 + AT_rich Low_complexity Low_complexity 1 23 0 3 629 387 0 0 0 chr9 5835871 5835914 -118240258 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 629 1088 64 0 0 chr9 5835970 5836111 -118240061 + B1_Mm SINE Alu 1 141 -6 3 629 498 33 0 0 chr9 5836118 5836178 -118239994 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 629 2264 213 89 79 chr9 5836514 5837135 -118239037 + RMER20B LTR ERVK 1 627 0 3 629 276 303 124 0 chr9 5837183 5837272 -118238900 - RSINE1 SINE B4 -64 101 2 3 629 863 302 97 68 chr9 5838061 5838409 -118237763 + L1M2 LINE L1 4424 4812 -1331 3 629 1176 68 0 0 chr9 5838409 5838556 -118237616 + B1_Mus2 SINE Alu 1 147 0 3 629 863 305 98 72 chr9 5838556 5839197 -118236975 + L1M2 LINE L1 4767 5405 -442 3 629 234 0 0 0 chr9 5839382 5839408 -118236764 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 3 629 452 232 158 18 chr9 5839576 5839747 -118236425 + L1M2 LINE L1 5455 5649 -540 3 629 1200 49 0 0 chr9 5839820 5839963 -118236209 - B1_Mus1 SINE Alu -5 143 1 3 629 322 255 40 30 chr9 5839980 5840081 -118236091 + L1M2 LINE L1 5695 5796 -504 3 629 454 265 93 24 chr9 5840090 5840348 -118235824 - MTD LTR MaLR -12 407 103 3 629 275 278 39 23 chr9 5840420 5840549 -118235623 + L1PB4 LINE L1 5794 5924 -232 3 629 600 316 31 27 chr9 5840822 5841046 -118235126 - Lx8 LINE L1 -334 7139 6915 3 629 514 235 80 0 chr9 5841055 5841217 -118234955 - L1_Mur3 LINE L1 -1554 4586 4412 4 629 715 230 56 0 chr9 5841222 5841383 -118234789 - URR1A DNA MER1_type 0 226 57 4 629 415 298 69 5 chr9 5841406 5841622 -118234550 - L1_Mur3 LINE L1 -1731 4412 4183 4 629 1067 197 52 212 chr9 5841632 5842089 -118234083 - ORR1C2 LTR MaLR 0 384 1 4 629 3815 268 43 54 chr9 5842089 5843206 -118232966 - ORR1C2-int LTR MaLR 0 1370 280 4 629 184 0 30 61 chr9 5843206 5843239 -118232933 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 629 3815 268 43 54 chr9 5843239 5843507 -118232665 - ORR1C2-int LTR MaLR -1091 279 1 4 629 936 214 66 33 chr9 5843509 5843707 -118232465 - ORR1C2 LTR MaLR -2 382 175 4 629 336 24 0 0 chr9 5843707 5843748 -118232424 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 4 629 936 214 66 33 chr9 5843748 5843762 -118232410 - ORR1C2 LTR MaLR -210 174 163 4 629 824 309 36 6 chr9 5843763 5844124 -118232048 - L1_Mur3 LINE L1 -1809 4071 3700 4 629 243 88 0 0 chr9 5844224 5844258 -118231914 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 629 1940 124 23 0 chr9 5844300 5844607 -118231565 + RMER6C LTR ERVK 3 316 -374 4 629 1048 65 13 6 chr9 5845463 5845619 -118230553 - L1_Mus3 LINE L1 -6 6632 6476 4 629 840 167 83 15 chr9 5845620 5845838 -118230334 - LTRIS5 LTR ERV1 0 512 217 4 629 361 113 81 0 chr9 5845898 5845960 -118230212 - LTRIS5 LTR ERV1 -380 67 1 4 629 3085 89 75 21 chr9 5845960 5846054 -118230118 - L1_Mus3 LINE L1 -161 6477 6390 4 629 2940 86 5 14 chr9 5846054 5846479 -118229693 - BGLII LTR ERVK 0 421 1 4 629 3085 89 75 21 chr9 5846479 5846865 -118229307 - L1_Mus3 LINE L1 -249 6389 5971 4 629 251 169 27 27 chr9 5846885 5846958 -118229214 + T-rich Low_complexity Low_complexity 2 74 0 4 629 7584 173 20 28 chr9 5846966 5848658 -118227514 - Lx2 LINE L1 -2 6995 5368 4 629 1126 95 0 0 chr9 5848658 5848805 -118227367 - B1_Mus2 SINE Alu 0 147 1 4 629 7145 187 65 57 chr9 5848805 5849497 -118226675 - Lx2 LINE L1 -516 5367 4617 4 629 459 0 0 0 chr9 5849497 5849548 -118226624 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 629 917 127 0 7 chr9 5849548 5849683 -118226489 - B1_Mm SINE Alu -10 137 4 4 629 7145 187 65 57 chr9 5849683 5850169 -118226003 - Lx2 LINE L1 -1267 4616 4129 4 629 4439 59 2 5 chr9 5850182 5850747 -118225425 - L1Md_F2 LINE L1 -186 6396 5834 4 629 1142 81 51 11 chr9 5850747 5850922 -118225250 + L1Md_F2 LINE L1 6390 6571 -11 4 629 6193 168 18 19 chr9 5850922 5852174 -118223998 - L1_Mur2 LINE L1 -1780 4097 2848 4 629 2028 213 109 35 chr9 5852150 5853309 -118222863 - L1VL2 LINE L1 -2267 1348 93 4 629 29 28 0 0 chr9 5853317 5853353 -118222819 + AT_rich Low_complexity Low_complexity 1 36 0 4 629 23 0 0 0 chr9 5853435 5853458 -118222714 + AT_rich Low_complexity Low_complexity 1 23 0 4 629 3734 129 39 28 chr9 5853549 5854193 -118221979 + Lx2 LINE L1 6333 6983 -14 4 629 269 244 11 23 chr9 5854327 5854415 -118221757 + CT-rich Low_complexity Low_complexity 2 88 0 4 629 2094 228 77 2 chr9 5854455 5854986 -118221186 - RMER15 LTR ERVL -2 573 3 4 629 227 226 19 19 chr9 5854999 5855053 -118221119 - Lx8 LINE L1 -248 7225 7172 4 629 1069 98 0 0 chr9 5855311 5855454 -118220718 + B1_Mus1 SINE Alu 1 143 -5 4 629 26 30 0 0 chr9 5855478 5855511 -118220661 + AT_rich Low_complexity Low_complexity 1 33 0 4 629 477 0 0 0 chr9 5856306 5856359 -118219813 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 629 738 305 28 32 chr9 5856832 5857079 -118219093 + B4A SINE B4 47 292 0 4 629 207 176 0 0 chr9 5857504 5857538 -118218634 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 629 1625 47 0 0 chr9 5857931 5858124 -118218048 + B2_Mm1t SINE B2 1 193 0 4 629 264 0 0 98 chr9 5858124 5858175 -118217997 + (TAAAA)n Simple_repeat Simple_repeat 1 46 0 4 629 669 129 0 0 chr9 5860684 5860800 -118215372 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 629 393 75 0 0 chr9 5860800 5860852 -118215320 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 629 3588 119 47 7 chr9 5860960 5861534 -118214638 - L1_Mus3 LINE L1 -13 6625 6029 4 629 2928 50 3 3 chr9 5862061 5862418 -118213754 - IAPEY2_LTR LTR ERVK 0 357 1 4 629 4901 72 63 0 chr9 5862422 5863077 -118213095 - IAPEY3-int LTR ERVK -1 7679 6984 4 629 202 368 44 0 chr9 5863077 5863191 -118212981 - L3b LINE CR1 -29 453 335 4 629 3543 69 9 0 chr9 5863206 5863655 -118212517 - IAPEY3-int LTR ERVK -4991 2689 2237 4 629 4583 98 3 0 chr9 5863631 5864251 -118211921 - IAPEY3-int LTR ERVK -5698 1982 1361 4 629 383 172 126 21 chr9 5866305 5866400 -118209772 - B1_Mur2 SINE Alu -1 148 44 4 629 352 294 186 14 chr9 5866643 5866788 -118209384 - B3 SINE B2 -14 202 33 4 629 239 330 8 125 chr9 5866857 5866985 -118209187 - PB1D10 SINE Alu 0 117 5 4 629 416 241 35 64 chr9 5868060 5868233 -118207939 + RNLTR23 LTR ERVK 475 642 0 4 629 424 183 8 25 chr9 5868233 5868351 -118207821 + GA-rich Low_complexity Low_complexity 1 116 0 4 629 1348 131 12 10 chr9 5868589 5868810 -118207362 + RLTR13C2 LTR ERVK 1 218 -675 4 629 21986 153 58 47 chr9 5869325 5875372 -118200800 - L1_Mus3 LINE L1 0 6638 524 4 629 511 274 20 68 chr9 5876084 5876335 -118199837 - Lx7 LINE L1 0 7696 7458 4 629 438 20 0 0 chr9 5876453 5876504 -118199668 + (CATA)n Simple_repeat Simple_repeat 4 54 0 4 629 1402 183 62 98 chr9 5876550 5876937 -118199235 - RLTR9C LTR ERVK -5 388 16 4 629 934 264 79 4 chr9 5876938 5877216 -118198956 - Lx7 LINE L1 -369 7327 7029 4 629 225 125 16 82 chr9 5877216 5877277 -118198895 + T-rich Low_complexity Low_complexity 2 58 0 4 629 1743 229 47 39 chr9 5877283 5877310 -118198862 - Lx7 LINE L1 -643 7053 7020 4 629 333 0 0 0 chr9 5877310 5877347 -118198825 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 629 1743 229 47 39 chr9 5877347 5877588 -118198584 - Lx7 LINE L1 -677 7019 6774 4 629 272 27 0 26 chr9 5877588 5877626 -118198546 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 629 1743 229 47 39 chr9 5877626 5877823 -118198349 - Lx7 LINE L1 -923 6773 6583 4 629 275 296 49 57 chr9 5878668 5878790 -118197382 - Lx8 LINE L1 -561 6912 6792 4 629 360 295 103 65 chr9 5879780 5879994 -118196178 - L1MEc LINE L1 -5244 1156 935 4 629 232 239 11 32 chr9 5880077 5880172 -118196000 + (TTTG)n Simple_repeat Simple_repeat 4 96 0 4 629 3483 18 2 0 chr9 5880235 5880630 -118195542 - MTA_Mm LTR MaLR 0 396 1 4 629 501 321 30 35 chr9 5882515 5882616 -118193556 + ID_B1 SINE B4 1 103 -121 4 629 1980 213 81 13 chr9 5882616 5883087 -118193085 - RLTR16 LTR ERVK -2 503 1 4 629 501 321 30 35 chr9 5883087 5883182 -118192990 + ID_B1 SINE B4 104 196 -28 4 629 25 0 0 0 chr9 5883652 5883677 -118192495 + AT_rich Low_complexity Low_complexity 1 25 0 4 629 282 29 0 0 chr9 5883724 5883759 -118192413 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 629 426 333 7 0 chr9 5883761 5883905 -118192267 - RSINE1 SINE B4 -19 146 2 4 629 483 63 0 0 chr9 5884517 5884580 -118191592 + (GGA)n Simple_repeat Simple_repeat 2 64 0 4 629 193 320 138 33 chr9 5885491 5885643 -118190529 - MIRb SINE MIR -21 247 80 4 629 649 304 11 71 chr9 5886671 5886951 -118189221 + Lx8 LINE L1 7210 7472 -1 4 629 349 306 44 26 chr9 5887142 5887256 -118188916 - ID_B1 SINE B4 -107 117 2 4 629 27 73 0 0 chr9 5887701 5887756 -118188416 + AT_rich Low_complexity Low_complexity 1 55 0 4 629 558 329 25 19 chr9 5887781 5887939 -118188233 + RSINE1 SINE B4 5 163 -2 4 629 2066 222 9 187 chr9 5888688 5889431 -118186741 + RMER19C LTR ERVK 1 611 0 4 629 489 331 7 33 chr9 5889431 5889577 -118186595 - B3A SINE B2 -56 142 1 4 629 21 0 0 0 chr9 5890091 5890112 -118186060 + AT_rich Low_complexity Low_complexity 1 21 0 4 629 649 204 52 19 chr9 5890262 5890417 -118185755 - Lx5 LINE L1 -138 6912 6753 4 629 195 42 0 0 chr9 5890487 5890511 -118185661 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 629 194 0 39 0 chr9 5890728 5890754 -118185418 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 629 4791 78 43 0 chr9 5891014 5891681 -118184491 + L1_Mus2 LINE L1 5871 6566 0 4 629 244 25 49 24 chr9 5891685 5891726 -118184446 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 4 629 9977 82 2 7 chr9 5891751 5893767 -118182405 - L1Md_F2 LINE L1 -147 6435 4431 4 629 2449 71 0 0 chr9 5893758 5894096 -118182076 + L1Md_F2 LINE L1 4093 4430 -1453 4 629 474 18 0 0 chr9 5894279 5894334 -118181838 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 629 30 59 0 0 chr9 5894364 5894415 -118181757 + AT_rich Low_complexity Low_complexity 1 51 0 4 629 339 194 0 0 chr9 5895389 5895492 -118180680 + T-rich Low_complexity Low_complexity 1 103 0 4 629 22 35 0 0 chr9 5895589 5895618 -118180554 + AT_rich Low_complexity Low_complexity 1 29 0 4 629 558 63 31 10 chr9 5895626 5895722 -118180450 - L1Md_F3 LINE L1 -2 6582 6485 4 629 2352 33 0 0 chr9 5895775 5896050 -118180122 - L1Md_T LINE L1 0 6582 6308 4 629 4496 191 13 54 chr9 5896519 5897637 -118178535 - L1_Mm LINE L1 -340 5543 4280 4 78 4391 116 43 7 chr9 5897637 5898332 -118177840 + L1_Mus3 LINE L1 5912 6631 -7 4 630 4389 196 141 18 chr9 5898332 5898463 -118177709 - L1_Mm LINE L1 -1598 4279 4134 4 630 6854 108 9 8 chr9 5898452 5899537 -118176635 + L1_Mus4 LINE L1 5574 6634 -2 4 630 5150 113 98 13 chr9 5900072 5900907 -118175265 + RMER17A2 LTR ERVK 1 906 0 4 630 441 307 196 0 chr9 5901449 5901602 -118174570 - B3A SINE B2 -13 185 3 4 630 307 224 0 60 chr9 5901653 5901786 -118174386 + (CATA)n Simple_repeat Simple_repeat 4 128 0 4 630 189 178 0 0 chr9 5901828 5901873 -118174299 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 630 180 176 0 0 chr9 5903686 5903720 -118172452 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 4 630 5816 141 10 54 chr9 5903810 5905314 -118170858 + Lx LINE L1 5212 6997 0 4 630 1060 100 0 0 chr9 5905372 5905512 -118170660 + B1_Mus2 SINE Alu 2 141 -6 4 630 1236 82 0 9 chr9 5905517 5905869 -118170303 + (GAA)n Simple_repeat Simple_repeat 1 348 0 4 630 327 104 0 0 chr9 5905869 5905917 -118170255 + (GGA)n Simple_repeat Simple_repeat 2 49 0 4 630 251 243 68 0 chr9 5906069 5906172 -118170000 + Lx9 LINE L1 7535 7644 0 4 630 396 0 0 0 chr9 5907054 5907098 -118169074 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 630 1044 93 0 0 chr9 5907224 5907374 -118168798 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 4 630 186 103 0 0 chr9 5907383 5907412 -118168760 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 4 630 8901 112 39 18 chr9 5907451 5908555 -118167617 - Lx3A LINE L1 -706 6275 5191 4 630 465 19 0 0 chr9 5908555 5908609 -118167563 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 4 630 8901 108 48 21 chr9 5908609 5909405 -118166767 - Lx3A LINE L1 -696 5190 4335 4 630 4085 146 8 8 chr9 5909405 5910073 -118166099 + Lx3A LINE L1 6299 6966 -15 4 630 208 53 53 0 chr9 5910073 5910111 -118166061 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 630 27 0 0 0 chr9 5910603 5910630 -118165542 + AT_rich Low_complexity Low_complexity 1 27 0 5 630 395 264 94 0 chr9 5910786 5910892 -118165280 + MIR SINE MIR 25 140 -122 5 630 269 330 190 0 chr9 5910915 5911015 -118165157 + B3A SINE B2 13 131 -67 5 630 490 348 19 65 chr9 5911073 5911288 -118164884 + B3A SINE B2 1 205 -11 5 630 208 280 0 0 chr9 5911776 5911826 -118164346 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 5 630 333 322 44 132 chr9 5912139 5912343 -118163829 + B3A SINE B2 1 186 -12 5 630 906 332 52 69 chr9 5912656 5913238 -118162934 - Lx5 LINE L1 0 7050 6479 5 630 601 318 134 9 chr9 5913235 5913654 -118162518 - Lx5 LINE L1 -687 6363 5893 5 630 3027 159 81 7 chr9 5913655 5914339 -118161833 - RLTR13D4 LTR ERVK 0 1033 1 5 630 1632 163 10 0 chr9 5914339 5914639 -118161533 - Lx5 LINE L1 -1153 5897 5595 5 630 512 294 97 113 chr9 5914812 5915184 -118160988 + MTE2a LTR MaLR 10 375 -4 5 630 374 178 0 72 chr9 5915184 5915281 -118160891 - Lx5 LINE L1 -598 5279 5190 5 630 3926 204 60 14 chr9 5915295 5916329 -118159843 - Lx5 LINE L1 -1169 4708 3627 5 630 1894 225 72 10 chr9 5916326 5917293 -118158879 - Lx5 LINE L1 -4023 1857 895 5 630 410 135 22 0 chr9 5917293 5917382 -118158790 + (TCTCTG)n Simple_repeat Simple_repeat 3 93 0 5 630 207 224 0 39 chr9 5918090 5918141 -118158031 - MIR SINE MIR -113 149 101 5 630 517 266 42 9 chr9 5918515 5918746 -118157426 + L1VL1 LINE L1 55 400 -6022 5 630 457 252 16 8 chr9 5918790 5918918 -118157254 + L1Md_F LINE L1 678 806 -5813 5 630 1786 213 17 4 chr9 5918926 5919355 -118156817 + L1Md_F LINE L1 728 1161 -5458 5 630 261 0 0 0 chr9 5919355 5919384 -118156788 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 630 12823 137 3 13 chr9 5919384 5921804 -118154368 + L1Md_F LINE L1 1043 3499 -2387 5 630 2134 146 24 79 chr9 5921805 5922221 -118153951 - RLTR9C LTR ERVK 0 393 1 5 630 414 139 0 0 chr9 5922226 5922298 -118153874 - ETnERV2-int LTR ERVK -4 7402 7331 5 630 1092 184 18 34 chr9 5922514 5923025 -118153147 - ETnERV2-int LTR ERVK -984 6422 6099 5 630 556 230 197 34 chr9 5923076 5923310 -118152862 + RLTR10A LTR ERVK 140 411 0 5 630 377 185 61 53 chr9 5923327 5923441 -118152731 + RLTR45-int LTR ERVK 319 433 -1554 5 630 1684 293 47 41 chr9 5923883 5926362 -118149810 + RLTR45-int LTR ERVK 6522 7042 -202 5 630 572 225 168 53 chr9 5926402 5926646 -118149526 + RLTR10A LTR ERVK 140 411 0 5 630 2369 196 5 78 chr9 5926646 5927085 -118149087 - ETnERV2-int LTR ERVK -1884 2960 2544 5 630 203 0 0 36 chr9 5927085 5927113 -118149059 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 630 3651 188 24 28 chr9 5927113 5928223 -118147949 - ETnERV2-int LTR ERVK -3321 4085 2356 5 630 1126 99 5 22 chr9 5928784 5928969 -118147203 - RLTR13D1 LTR ERVK -156 650 469 5 630 599 140 24 71 chr9 5928975 5929170 -118147002 - ETnERV2-int LTR ERVK -3996 3410 3035 5 630 1391 138 70 8 chr9 5929167 5929423 -118146749 - ETnERV2-int LTR ERVK -4641 2765 2494 5 630 2490 165 135 8 chr9 5929414 5930079 -118146093 - ETnERV2-int LTR ERVK -5162 2244 1495 5 630 1487 65 0 0 chr9 5930079 5930265 -118145907 + ORR1A0 LTR MaLR 161 346 0 5 630 1315 165 139 63 chr9 5930300 5930681 -118145491 - ETnERV2-int LTR ERVK -5923 1483 1074 5 630 450 227 25 129 chr9 5930727 5931005 -118145167 - ETnERV2-int LTR ERVK -4594 250 2 5 630 2035 129 54 84 chr9 5931007 5931412 -118144760 - RLTR9C LTR ERVK 0 393 1 5 630 14071 132 4 7 chr9 5931412 5933210 -118142962 + L1_Mus1 LINE L1 3492 5282 -601 5 630 231 61 0 0 chr9 5933210 5933243 -118142929 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 630 14071 102 5 2 chr9 5933243 5934512 -118141660 + L1_Mus1 LINE L1 5283 6558 -9 5 630 36633 13 4 7 chr9 5934513 5940526 -118135646 + L1Md_A LINE L1 1 5586 -297 5 630 8816 16 0 0 chr9 5940526 5941522 -118134650 + L1Md_A LINE L1 5587 6582 0 5 630 317 49 0 0 chr9 5941584 5941625 -118134547 + L1_Mur1 LINE L1 4862 4902 -984 5 630 39 60 0 0 chr9 5941954 5942021 -118134151 + AT_rich Low_complexity Low_complexity 1 67 0 5 630 623 316 5 10 chr9 5942177 5942385 -118133787 - B3 SINE B2 -7 209 3 5 630 1586 211 184 2 chr9 5942432 5942568 -118133604 + RLTR11A2 LTR ERVK 1 141 -386 5 630 198 0 0 0 chr9 5942568 5942590 -118133582 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 5 630 1586 211 184 2 chr9 5942590 5942640 -118133532 + RLTR11A2 LTR ERVK 142 200 -327 5 630 745 40 20 0 chr9 5942640 5942741 -118133431 + (GA)n Simple_repeat Simple_repeat 1 103 0 5 630 1586 211 184 2 chr9 5942741 5942999 -118133173 + RLTR11A2 LTR ERVK 201 525 -2 5 630 3084 66 2 0 chr9 5943082 5943476 -118132696 + LTRIS3 LTR ERV1 118 512 0 5 630 1064 8 8 0 chr9 5943477 5943602 -118132570 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 5 630 4217 127 22 16 chr9 5943602 5944285 -118131887 - Lx LINE L1 -12 6642 5956 5 630 9707 160 14 1 chr9 5944915 5946587 -118129585 + L1_Mm LINE L1 3861 5555 -328 5 630 275 291 49 118 chr9 5947073 5947127 -118129045 - B2_Mm1t SINE B2 -4 189 135 5 630 429 116 0 0 chr9 5947127 5947196 -118128976 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 630 376 291 49 118 chr9 5947196 5947344 -118128828 - B3A SINE B2 -59 134 1 5 630 360 43 0 0 chr9 5947630 5947676 -118128496 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 630 21 57 0 0 chr9 5947714 5947749 -118128423 + AT_rich Low_complexity Low_complexity 1 35 0 5 630 513 0 0 0 chr9 5947805 5947862 -118128310 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 630 201 74 0 0 chr9 5951879 5951906 -118124266 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 630 279 0 0 0 chr9 5952151 5952182 -118123990 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 630 491 0 17 0 chr9 5952324 5952383 -118123789 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 5 630 224 91 23 0 chr9 5953174 5953218 -118122954 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 5 630 350 350 30 48 chr9 5953394 5953559 -118122613 - MLT1A LTR MaLR -212 162 1 5 630 468 307 78 27 chr9 5954098 5954356 -118121816 - RMER5 LTR ERV1 -131 403 133 5 630 2260 47 0 0 chr9 5954812 5955090 -118121082 - L1_Mus1 LINE L1 0 6567 6290 5 630 378 0 0 0 chr9 5955890 5955932 -118120240 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 630 2950 56 200 9 chr9 5956177 5956607 -118119565 - RLTR1B LTR ERV1 0 512 1 5 630 1556 156 17 0 chr9 5956940 5957177 -118118995 - Lx3C LINE L1 -143 6833 6593 5 630 25 0 0 0 chr9 5957836 5957861 -118118311 + AT_rich Low_complexity Low_complexity 1 25 0 5 630 3747 143 37 2 chr9 5957865 5958481 -118117691 - Lx3B LINE L1 -6 6967 6330 5 630 2258 114 0 3 chr9 5958481 5958794 -118117378 - MTB LTR MaLR 0 400 89 5 630 1225 156 36 53 chr9 5958794 5959049 -118117123 + RLTR9C LTR ERVK 1 259 -156 5 630 8875 102 137 1 chr9 5959062 5961522 -118114650 - L1Md_F2 LINE L1 0 6582 3726 5 630 4165 196 25 37 chr9 5961542 5962475 -118113697 - L1Md_F2 LINE L1 -5640 1344 442 5 630 483 18 0 0 chr9 5962749 5962805 -118113367 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 630 4200 169 1 13 chr9 5963078 5963845 -118112327 + Lx LINE L1 4119 4876 -1007 5 630 12731 189 175 9 chr9 5963845 5968379 -118107793 - L1_Mus1 LINE L1 -3 6564 1214 5 630 3710 177 93 10 chr9 5968356 5969144 -118107028 - L1Md_F LINE L1 -5380 1139 287 5 630 262 257 0 0 chr9 5969176 5969246 -118106926 + Lx LINE L1 4862 4931 -952 5 630 231 36 0 0 chr9 5969254 5969282 -118106890 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 630 466 222 0 22 chr9 5969283 5969375 -118106797 - B1_Mus2 SINE Alu -10 137 48 5 630 4499 170 54 36 chr9 5969377 5969781 -118106391 + Lx LINE L1 4924 5354 -529 5 630 1054 98 14 0 chr9 5969781 5969924 -118106248 + B1_Mm SINE Alu 3 147 0 5 630 4499 170 54 36 chr9 5969924 5969958 -118106214 + Lx LINE L1 5355 5362 -521 5 630 897 37 0 0 chr9 5969958 5970067 -118106105 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 5 630 4957 135 13 14 chr9 5970067 5971025 -118105147 + Lx LINE L1 5363 6334 -320 5 630 2177 187 81 13 chr9 5971052 5971584 -118104588 + L1_Mur3 LINE L1 3775 4342 -1538 5 630 1003 137 23 0 chr9 5971584 5971759 -118104413 - BGLII LTR ERVK 0 421 243 5 630 210 219 0 0 chr9 5972998 5973039 -118103133 + (ACTG)n Simple_repeat Simple_repeat 4 44 0 5 630 591 298 28 28 chr9 5973039 5973253 -118102919 - ID_B1 SINE B4 -9 215 2 5 630 192 289 91 20 chr9 5973292 5973391 -118102781 - MIRb SINE MIR -46 222 117 5 630 288 275 42 39 chr9 5974112 5974238 -118101934 + L1VL1 LINE L1 217 362 -6060 5 630 391 318 42 5 chr9 5974278 5974471 -118101701 + L1_Mus2 LINE L1 634 833 -5783 5 630 27128 119 29 34 chr9 5974450 5976141 -118100031 + L1_Mus2 LINE L1 725 2442 -4124 5 630 826 126 8 0 chr9 5976141 5976268 -118099904 + B1_Mus1 SINE Alu 19 146 -2 5 630 27128 119 29 34 chr9 5976268 5980321 -118095851 + L1_Mus2 LINE L1 2443 6564 -2 5 630 1242 91 0 0 chr9 5980344 5980554 -118095618 + (GGAA)n Simple_repeat Simple_repeat 1 210 0 5 630 24182 89 5 1 chr9 5980594 5984641 -118091531 - L1Md_F2 LINE L1 -3 6579 2519 5 630 1143 55 7 0 chr9 5984666 5984811 -118091361 - B1_Mm SINE Alu -1 146 1 5 630 220 27 26 26 chr9 5984984 5985022 -118091150 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 630 482 246 1 42 chr9 5985353 5985477 -118090695 + B1_Mus2 SINE Alu 5 117 -31 5 630 379 305 79 38 chr9 5987816 5988061 -118088111 + L1MCc LINE L1 17 268 -6155 5 630 180 0 0 0 chr9 5988061 5988081 -118088091 + (GAAAA)n Simple_repeat Simple_repeat 3 22 0 5 630 379 305 79 38 chr9 5988081 5988176 -118087996 + L1MCc LINE L1 269 371 -6052 5 630 183 42 0 0 chr9 5988295 5988319 -118087853 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5 630 180 125 0 0 chr9 5988833 5988865 -118087307 + (A)n Simple_repeat Simple_repeat 1 32 0 5 630 282 242 84 40 chr9 5988942 5989196 -118086976 - L1_Mur3 LINE L1 -3369 2478 2207 5 630 526 313 60 12 chr9 5989213 5989381 -118086791 - B3A SINE B2 -9 189 14 5 630 227 338 38 22 chr9 5989601 5989919 -118086253 - L1_Mur3 LINE L1 -3866 2014 1692 5 630 1185 42 7 0 chr9 5991713 5991857 -118084315 - B1_Mm SINE Alu -1 146 2 5 630 804 108 22 0 chr9 5992209 5992348 -118083824 + (TTTTC)n Simple_repeat Simple_repeat 5 146 0 5 630 31 44 0 0 chr9 5992745 5992790 -118083382 + AT_rich Low_complexity Low_complexity 1 45 0 5 630 29 47 0 0 chr9 5993706 5993749 -118082423 + AT_rich Low_complexity Low_complexity 1 43 0 5 630 595 324 0 20 chr9 5994335 5994483 -118081689 - RSINE1 SINE B4 -9 156 12 5 630 28 0 0 0 chr9 5994598 5994626 -118081546 + AT_rich Low_complexity Low_complexity 1 28 0 5 630 420 285 36 68 chr9 5994745 5994937 -118081235 + Lx6 LINE L1 7249 7434 -26 5 630 2707 47 73 3 chr9 5995438 5995779 -118080393 + RLTR10B2 LTR ERVK 1 365 0 5 630 1265 64 1 18 chr9 5995789 5995969 -118080203 + RLTR10-int LTR ERVK 41 267 -7314 5 630 394 125 28 46 chr9 5996057 5996166 -118080006 + GA-rich Low_complexity Low_complexity 3 109 0 5 630 2784 65 112 0 chr9 5996169 5996553 -118079619 + RLTR10-int LTR ERVK 566 992 -995 5 630 440 331 35 38 chr9 5996578 5996974 -118079198 + RLTR10-int LTR ERVK 1172 1566 -6015 5 630 1525 100 100 0 chr9 5996977 5997206 -118078966 + IAP-d-int LTR ERVK 5004 5255 -1287 5 630 4007 141 18 16 chr9 5997210 5997895 -118078277 + IAPEY3-int LTR ERVK 6995 7680 0 5 630 2935 38 0 67 chr9 5997895 5998286 -118077886 + RLTR10B2 LTR ERVK 1 365 0 5 630 441 0 0 0 chr9 5998427 5998476 -118077696 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 630 237 325 0 12 chr9 5999206 5999290 -118076882 + GA-rich Low_complexity Low_complexity 2 84 0 5 630 2025 223 44 9 chr9 5999375 5999832 -118076340 - Lx7 LINE L1 -592 7104 6632 5 630 965 187 41 0 chr9 5999829 6000000 -118076172 - Lx6 LINE L1 -895 6565 6388 5 630 2386 262 57 26 chr9 6000010 6000208 -118075964 - Lx7 LINE L1 -1308 6388 6171 1 630 459 0 0 0 chr9 6000208 6000259 -118075913 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 630 11103 231 81 96 chr9 6000259 6001618 -118074554 - Lx7 LINE L1 -1526 6170 4819 1 630 207 0 0 0 chr9 6001618 6001641 -118074531 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 630 11103 223 88 115 chr9 6001641 6002316 -118073856 - Lx7 LINE L1 -1062 4818 4122 1 630 4122 63 41 0 chr9 6002316 6002854 -118073318 + LTRIS2 LTR ERV1 5 564 0 4 630 11103 223 88 115 chr9 6002854 6004286 -118071886 - Lx7 LINE L1 -1759 4121 2543 1 630 2586 139 23 7 chr9 6004286 6004714 -118071458 - RLTR9B LTR ERVK -2 435 1 5 630 11103 223 88 115 chr9 6004714 6005157 -118071015 - Lx7 LINE L1 -1759 2542 2053 1 630 594 0 0 0 chr9 6005157 6005223 -118070949 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 630 11103 223 88 115 chr9 6005223 6005755 -118070417 - Lx7 LINE L1 -3828 2052 1438 1 630 414 39 0 0 chr9 6005755 6005807 -118070365 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 630 11103 239 102 46 chr9 6005807 6007104 -118069068 - Lx7 LINE L1 -4443 1437 49 1 630 363 78 0 0 chr9 6009088 6009139 -118067033 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 630 253 337 0 122 chr9 6009589 6009630 -118066542 + B4 SINE B4 124 161 -131 9 630 2494 112 140 19 chr9 6009630 6010058 -118066114 - RLTR45 LTR ERVK 0 482 3 1 630 253 337 0 122 chr9 6010058 6010114 -118066058 + B4 SINE B4 162 209 -83 9 630 7299 88 22 2 chr9 6010184 6011187 -118064985 - RLTR13D5 LTR ERVK 0 1023 1 1 630 1093 180 127 39 chr9 6011521 6011781 -118064391 + Lx4B LINE L1 6775 7057 -1 1 630 270 245 173 81 chr9 6011798 6011971 -118064201 - Arthur1 DNA Tip100 -2822 1125 937 1 630 24 0 0 0 chr9 6012202 6012226 -118063946 + AT_rich Low_complexity Low_complexity 1 24 0 1 630 1091 90 0 0 chr9 6012226 6012370 -118063802 - B1_Mm SINE Alu -3 144 1 1 630 814 116 7 7 chr9 6013093 6013232 -118062940 + (GGAA)n Simple_repeat Simple_repeat 2 140 0 1 630 2461 213 17 7 chr9 6014245 6014821 -118061351 + L1_Mur3 LINE L1 3801 4382 -1498 1 630 1411 146 137 7 chr9 6014975 6015245 -118060927 - ORR1A4 LTR MaLR -24 305 1 1 630 396 0 0 0 chr9 6016237 6016281 -118059891 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 630 4729 208 89 12 chr9 6016281 6017285 -118058887 + L1_Mur3 LINE L1 4380 5440 -440 1 630 891 131 0 21 chr9 6017285 6017426 -118058746 + B1_Mus1 SINE Alu 2 139 -9 2 630 423 0 0 0 chr9 6017431 6017478 -118058694 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 630 4729 208 89 12 chr9 6017478 6017708 -118058464 + L1_Mur3 LINE L1 5446 5714 -166 1 630 5720 115 33 36 chr9 6017703 6018322 -118057850 + L1_Mus2 LINE L1 408 1048 -5590 2 630 5213 124 21 27 chr9 6018322 6019214 -118056958 - RMER17D LTR ERVK -2 887 1 2 630 22595 120 18 160 chr9 6019214 6021430 -118054742 + L1_Mus2 LINE L1 1049 2583 -3300 2 630 2151 138 21 81 chr9 6021430 6021848 -118054324 - RLTR9C LTR ERVK 0 393 1 2 630 22595 111 13 143 chr9 6021848 6024687 -118051485 + L1_Mus2 LINE L1 2584 5366 -1200 2 630 620 74 103 21 chr9 6024687 6024784 -118051388 - B1_Mus2 SINE Alu -1 146 42 2 630 227 192 66 66 chr9 6024722 6024828 -118051344 - RLTR25B LTR ERVK -526 502 397 2 630 22595 111 13 143 chr9 6024828 6024860 -118051312 + L1_Mus2 LINE L1 5367 5397 -1169 2 630 384 117 0 32 chr9 6024860 6024922 -118051250 - B1_Mus1 SINE Alu -88 60 1 2 630 22595 111 13 143 chr9 6024922 6026109 -118050063 + L1_Mus2 LINE L1 5398 6564 -2 2 630 1481 236 32 26 chr9 6026116 6026622 -118049550 + Lx7 LINE L1 5702 6198 -1498 2 630 387 0 0 0 chr9 6026885 6026928 -118049244 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 630 27 49 0 0 chr9 6027810 6027851 -118048321 + AT_rich Low_complexity Low_complexity 1 41 0 3 630 182 348 78 43 chr9 6028435 6028576 -118047596 - MIR SINE MIR -25 237 92 3 630 756 286 118 74 chr9 6028644 6029007 -118047165 + MTEa LTR MaLR 1 379 0 3 631 329 357 142 17 chr9 6029392 6029694 -118046478 - MamRep605 Unknown Unknown -213 663 324 3 631 1582 326 72 8 chr9 6030562 6031217 -118044955 + Lx8 LINE L1 6542 7238 -235 3 631 525 147 0 0 chr9 6031217 6031326 -118044846 + (TTTTC)n Simple_repeat Simple_repeat 4 112 0 3 631 1116 75 7 0 chr9 6031335 6031481 -118044691 - B1_Mus2 SINE Alu 0 147 1 3 631 350 288 92 43 chr9 6031481 6031688 -118044484 + Lx8 LINE L1 7228 7444 -29 3 631 24 0 0 0 chr9 6031713 6031737 -118044435 + AT_rich Low_complexity Low_complexity 1 24 0 3 631 295 395 59 26 chr9 6032140 6032413 -118043759 + MLT1E2 LTR MaLR 219 500 -127 3 631 528 295 38 5 chr9 6032563 6032747 -118043425 - MIR SINE MIR -59 203 14 3 631 319 119 30 0 chr9 6032844 6032911 -118043261 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 631 329 321 0 15 chr9 6032921 6033057 -118043115 - L1_Rod LINE L1 -1912 3935 3802 4 631 211 257 9 28 chr9 6033057 6033165 -118043007 + (TATAA)n Simple_repeat Simple_repeat 2 107 0 4 631 857 212 43 33 chr9 6034025 6034235 -118041937 + B3 SINE B2 2 213 -3 4 631 525 219 310 6 chr9 6035196 6035354 -118040818 - B3 SINE B2 -5 211 6 4 631 206 121 0 0 chr9 6035631 6035664 -118040508 + (A)n Simple_repeat Simple_repeat 1 33 0 4 631 284 111 19 0 chr9 6035861 6035915 -118040257 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 4 631 2433 272 75 48 chr9 6035970 6037069 -118039103 + RMER1A Other Other 49 829 -201 4 631 486 0 0 0 chr9 6037392 6037446 -118038726 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 631 2086 208 77 12 chr9 6037448 6037954 -118038218 - Lx4B LINE L1 -3 7055 6517 4 631 1466 123 9 0 chr9 6037956 6038175 -118037997 + RMER17B LTR ERVK 1 221 -737 5 631 1012 152 0 57 chr9 6038175 6038384 -118037788 + RMER17B LTR ERVK 758 954 -4 5 631 4409 199 26 8 chr9 6038390 6039480 -118036692 - Lx4B LINE L1 -540 6518 5404 4 631 5102 161 45 67 chr9 6039478 6039684 -118036488 - Lx4B LINE L1 -1467 4410 4182 4 631 414 0 0 0 chr9 6039684 6039730 -118036442 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 631 600 53 0 0 chr9 6039730 6039805 -118036367 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 631 5102 161 45 67 chr9 6039805 6040471 -118035701 - Lx4B LINE L1 -1696 4181 3527 4 631 1002 91 0 0 chr9 6040471 6040614 -118035558 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 5 631 5102 161 45 67 chr9 6040614 6040948 -118035224 - Lx4B LINE L1 -2351 3526 3230 4 631 1735 198 35 0 chr9 6040980 6041374 -118034798 + L1_Mur2 LINE L1 2744 3151 -2726 5 631 3426 218 45 8 chr9 6041406 6042281 -118033891 - Lx4B LINE L1 -3746 2140 1234 4 631 429 141 0 0 chr9 6042281 6042352 -118033820 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 631 23 33 0 0 chr9 6042498 6042528 -118033644 + AT_rich Low_complexity Low_complexity 1 30 0 5 631 688 270 162 20 chr9 6043092 6043226 -118032946 - MTD LTR MaLR -130 289 123 5 631 607 26 0 0 chr9 6043226 6043304 -118032868 + L1Md_T LINE L1 6505 6582 0 5 631 688 270 162 20 chr9 6043304 6043422 -118032750 - MTD LTR MaLR -297 122 2 5 631 223 356 102 24 chr9 6043800 6043967 -118032205 - MIR SINE MIR -64 198 19 5 631 664 145 17 0 chr9 6045163 6045280 -118030892 - L1_Mus3 LINE L1 -158 6480 6362 6 631 279 0 0 0 chr9 6045299 6045330 -118030842 + (T)n Simple_repeat Simple_repeat 1 31 0 6 631 5769 89 0 11 chr9 6045330 6046132 -118030040 - L1_Mus3 LINE L1 -257 6381 5589 6 631 1029 89 13 6 chr9 6046157 6046315 -118029857 + L1_Mus3 LINE L1 6474 6632 -6 6 631 249 286 62 23 chr9 6046384 6046513 -118029659 + Zaphod2 DNA Tip100 1382 1515 -2009 6 631 609 285 99 60 chr9 6046758 6047037 -118029135 - MTD LTR MaLR -37 382 84 6 631 2476 152 33 11 chr9 6047326 6047980 -118028192 + L1_Mur2 LINE L1 817 1490 -4387 6 631 4341 142 13 38 chr9 6047984 6048804 -118027368 + RMER17D2 LTR ERVK 10 809 0 6 631 11371 187 27 48 chr9 6048804 6049340 -118026832 + L1_Mur2 LINE L1 1513 2051 -3826 6 631 472 111 22 0 chr9 6049340 6049430 -118026742 + (CA)n Simple_repeat Simple_repeat 2 93 0 6 631 11371 187 27 48 chr9 6049430 6050154 -118026018 + L1_Mur2 LINE L1 2052 2781 -3096 6 631 891 138 101 12 chr9 6050154 6050323 -118025849 + B2_Mm2 SINE B2 4 187 -8 6 631 11371 187 27 48 chr9 6050323 6051395 -118024777 + L1_Mur2 LINE L1 2782 3795 -2082 6 631 1687 88 12 31 chr9 6051395 6051654 -118024518 + L1Md_F2 LINE L1 6329 6582 0 6 631 11371 187 27 48 chr9 6051654 6051980 -118024192 + L1_Mur2 LINE L1 3796 4119 -1758 6 631 1748 266 23 31 chr9 6051980 6052458 -118023714 - RMER19C LTR ERVK 0 611 138 7 631 866 159 60 65 chr9 6052507 6052888 -118023284 - MurERV4_19-int LTR ERVK -4 5776 5260 7 631 6343 149 22 16 chr9 6052919 6054077 -118022095 - MurERV4_19-int LTR ERVK -1223 4557 3393 7 631 2489 153 5 5 chr9 6054077 6054517 -118021655 - L1VL4 LINE L1 -1489 4394 3955 7 631 878 196 56 154 chr9 6054527 6054865 -118021307 + RLTRETN_Mm LTR ERVK 89 393 0 7 631 13314 101 40 52 chr9 6054866 6057443 -118018729 + MMETn-int LTR ERVK 2 2570 -2274 7 631 1500 68 5 0 chr9 6057443 6057635 -118018537 + B2_Mm1t SINE B2 1 193 0 7 631 13314 168 101 96 chr9 6057635 6059580 -118016592 + MMETn-int LTR ERVK 2571 4507 -337 7 631 232 230 449 16 chr9 6059580 6059836 -118016336 + RLTR13D6 LTR ERVK 171 537 -365 7 631 448 96 55 0 chr9 6059836 6059909 -118016263 + ETnERV2-int LTR ERVK 7329 7405 -1 7 631 837 196 87 140 chr9 6059909 6060324 -118015848 + RLTR9C LTR ERVK 1 393 0 7 631 14538 149 15 13 chr9 6060324 6061030 -118015142 - L1VL4 LINE L1 -1923 3960 3258 7 631 209 33 0 32 chr9 6061030 6061061 -118015111 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 7 631 14538 118 14 20 chr9 6061061 6063503 -118012669 - L1VL4 LINE L1 -657 3257 841 7 631 366 306 89 0 chr9 6063526 6063650 -118012522 - L1VL4 LINE L1 -5972 685 551 7 631 6733 189 47 25 chr9 6063648 6066081 -118010091 + Lx5 LINE L1 4545 7047 -3 7 631 222 91 0 0 chr9 6066201 6066234 -118009938 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 631 1416 81 0 0 chr9 6066430 6066615 -118009557 - B2_Mm1a SINE B2 -7 186 2 8 631 3765 117 40 7 chr9 6066977 6067570 -118008602 - Lx LINE L1 0 6654 6042 8 631 290 318 37 9 chr9 6067867 6067975 -118008197 + PB1 SINE Alu 15 125 -2 8 631 204 62 62 0 chr9 6067977 6068009 -118008163 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 8 631 276 100 0 0 chr9 6068251 6068291 -118007881 + (A)n Simple_repeat Simple_repeat 1 40 0 8 631 1629 42 0 0 chr9 6069437 6069630 -118006542 - B2_Mm1t SINE B2 0 193 1 8 631 287 85 0 21 chr9 6070013 6070061 -118006111 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 631 432 86 0 0 chr9 6070378 6070448 -118005724 + (CAG)n Simple_repeat Simple_repeat 1 70 0 8 631 294 95 0 0 chr9 6070648 6070690 -118005482 + (T)n Simple_repeat Simple_repeat 1 42 0 8 631 490 282 88 30 chr9 6070723 6070755 -118005417 + L1ME3B LINE L1 5588 5620 -620 8 631 3548 61 2 4 chr9 6070755 6071218 -118004954 - L1Md_F2 LINE L1 -3 6579 6118 9 631 2911 39 39 0 chr9 6071218 6071581 -118004591 + L1Md_F3 LINE L1 5592 5968 -616 9 631 5632 113 6 2 chr9 6072295 6073119 -118003053 - L1_Mus1 LINE L1 0 5883 5057 9 631 1737 74 0 0 chr9 6073102 6073331 -118002841 + L1_Mus1 LINE L1 5900 6128 -439 9 631 2580 43 3 3 chr9 6073341 6073666 -118002506 + IAPEY2_LTR LTR ERVK 32 356 -1 9 631 3447 72 0 0 chr9 6073666 6074108 -118002064 + L1_Mus1 LINE L1 6122 6563 -4 9 631 356 179 13 0 chr9 6074278 6074356 -118001816 + CT-rich Low_complexity Low_complexity 1 79 0 9 631 7050 85 14 7 chr9 6075618 6075661 -118000511 - L1_Mus2 LINE L1 0 6566 6524 9 631 3041 53 10 10 chr9 6075661 6076057 -118000115 - MTA_Mm LTR MaLR 0 396 1 9 631 7050 86 11 6 chr9 6076057 6077270 -117998902 - L1_Mus2 LINE L1 -43 6523 5303 9 631 13485 112 17 4 chr9 6077260 6079677 -117996495 - L1_Mus2 LINE L1 -2452 3431 981 9 631 1830 109 28 28 chr9 6079677 6079999 -117996173 - RLTRETN_Mm LTR ERVK 0 322 1 9 631 10823 61 4 23 chr9 6080003 6081453 -117994719 - MMETn-int LTR ERVK -4 4840 3419 9 631 895 220 73 39 chr9 6081592 6081824 -117994348 - Lx3B LINE L1 -4 6969 6730 9 631 432 86 0 0 chr9 6082222 6082292 -117993880 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 631 636 294 7 0 chr9 6082292 6082428 -117993744 - RSINE1 SINE B4 -25 140 4 1 631 1394 247 54 20 chr9 6083040 6083445 -117992727 - MTD LTR MaLR 0 419 1 1 631 266 237 62 50 chr9 6083587 6083667 -117992505 - RLTR25A LTR ERVK -501 602 522 1 631 771 74 3 1 chr9 6083596 6083713 -117992459 - B1_Mus1 SINE Alu -1 119 1 1 631 342 272 39 112 chr9 6083713 6083788 -117992384 - MT2B2 LTR ERVL -430 154 93 1 631 22 56 0 0 chr9 6083923 6083959 -117992213 + AT_rich Low_complexity Low_complexity 1 36 0 1 631 236 192 39 0 chr9 6084121 6084173 -117991999 - LTR33C LTR ERVL -21 608 555 1 631 193 109 43 0 chr9 6085008 6085054 -117991118 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 631 537 16 0 0 chr9 6085173 6085235 -117990937 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 631 481 45 44 22 chr9 6085299 6085389 -117990783 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 1 631 282 56 0 0 chr9 6085404 6085440 -117990732 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 631 582 317 61 0 chr9 6087789 6087969 -117988203 - B3A SINE B2 -7 191 1 1 631 21 0 0 0 chr9 6088417 6088438 -117987734 + AT_rich Low_complexity Low_complexity 1 21 0 1 631 32 75 0 0 chr9 6088500 6088567 -117987605 + AT_rich Low_complexity Low_complexity 1 67 0 1 631 1076 217 131 0 chr9 6088638 6088974 -117987198 - Lx9 LINE L1 -2 7642 7263 1 631 189 0 0 0 chr9 6089122 6089143 -117987029 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 631 180 0 0 0 chr9 6089143 6089162 -117987010 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 631 227 224 64 26 chr9 6089463 6089541 -117986631 - L1_Rod LINE L1 -32 5815 5735 1 631 785 155 132 0 chr9 6089715 6089889 -117986283 + RLTR47_MM LTR ERV1 336 532 0 1 631 327 250 33 33 chr9 6090390 6090481 -117985691 + MuRRS4-int LTR ERV1 587 677 -6879 1 631 1266 309 63 54 chr9 6090932 6092021 -117984151 + MuRRS4-int LTR ERV1 1056 2247 -5354 1 631 12633 134 10 41 chr9 6092212 6093360 -117982812 + L1VL2 LINE L1 313 1414 -2201 1 631 765 146 0 7 chr9 6093360 6093498 -117982674 + L1Md_F2 LINE L1 6442 6578 -4 1 631 12633 132 18 13 chr9 6093498 6095235 -117980937 + L1VL2 LINE L1 1415 3163 -452 1 631 198 0 0 0 chr9 6095238 6095260 -117980912 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1 631 6460 46 4 1 chr9 6095263 6096053 -117980119 - L1Md_F2 LINE L1 -25 6557 5766 1 631 9626 151 5 7 chr9 6096044 6097731 -117978441 + L1_Mm LINE L1 3457 5139 -744 1 631 14783 117 15 60 chr9 6097729 6100000 -117976172 - L1VL1 LINE L1 -2124 3759 1480 1 631 270 56 0 0 chr9 6100000 6100036 -117976136 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 631 873 113 0 0 chr9 6100039 6100172 -117976000 - B1_Mus2 SINE Alu -6 141 9 1 631 360 266 77 77 chr9 6100172 6100192 -117975980 - B4 SINE B4 -70 220 68 1 631 14783 93 18 21 chr9 6100192 6101234 -117974938 - L1VL1 LINE L1 -4404 1478 404 1 631 3903 79 17 2 chr9 6101244 6101777 -117974395 - L1Md_F2 LINE L1 0 6582 6042 1 631 495 272 17 9 chr9 6103786 6103901 -117972271 + PB1 SINE Alu 1 116 -11 1 631 213 152 0 21 chr9 6104197 6104244 -117971928 + T-rich Low_complexity Low_complexity 3 48 0 1 631 369 0 0 0 chr9 6104789 6104830 -117971342 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 1 631 391 262 0 12 chr9 6105474 6105555 -117970617 - ID_B1 SINE B4 -10 214 135 1 631 645 56 0 0 chr9 6106243 6106333 -117969839 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 631 323 335 40 23 chr9 6106543 6106717 -117969455 - MER5B DNA MER1_type -1 177 1 1 631 490 269 59 0 chr9 6107536 6107655 -117968517 + B1F SINE Alu 3 128 -21 1 631 494 286 97 6 chr9 6108220 6108385 -117967787 + MER58A DNA MER1_type 30 209 -15 1 631 627 261 69 48 chr9 6108478 6108667 -117967505 + B3 SINE B2 24 216 0 1 631 534 306 35 61 chr9 6110000 6110198 -117965974 + B3A SINE B2 6 198 0 1 631 896 296 17 60 chr9 6111403 6111701 -117964471 + B4 SINE B4 8 292 0 1 631 5836 77 4 15 chr9 6112254 6112717 -117963455 + L1Md_F2 LINE L1 5786 6250 -332 1 631 2995 23 0 3 chr9 6112717 6113063 -117963109 - ORR1A0 LTR MaLR -1 345 1 1 631 13581 56 22 1 chr9 6113063 6114819 -117961353 - ORR1A0-int LTR MaLR 0 1792 1 1 631 2933 29 3 6 chr9 6114819 6115166 -117961006 - ORR1A0 LTR MaLR 0 346 1 1 631 5836 77 4 15 chr9 6115166 6115500 -117960672 + L1Md_F2 LINE L1 6251 6574 -8 1 631 184 269 58 0 chr9 6115647 6115699 -117960473 - MIR SINE MIR -113 149 95 1 631 22 0 0 0 chr9 6117046 6117068 -117959104 + AT_rich Low_complexity Low_complexity 1 22 0 1 631 553 284 63 34 chr9 6117475 6117650 -117958522 + B3A SINE B2 1 180 -18 1 631 186 133 0 0 chr9 6117666 6117696 -117958476 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 631 602 163 20 0 chr9 6117723 6117821 -117958351 + Lx4B LINE L1 6479 6578 -480 1 631 32613 92 15 14 chr9 6118343 6124461 -117951711 + L1_Mus1 LINE L1 442 6567 0 1 631 26374 134 18 7 chr9 6124613 6129676 -117946496 + L1Md_F LINE L1 387 5506 -377 1 631 790 58 0 0 chr9 6129680 6129784 -117946388 + L1_Mus1 LINE L1 5896 5999 -568 1 631 1743 98 0 0 chr9 6129784 6130029 -117946143 + L1_Mus1 LINE L1 6323 6567 0 1 631 25 31 0 0 chr9 6130269 6130301 -117945871 + AT_rich Low_complexity Low_complexity 1 32 0 1 631 1262 210 64 25 chr9 6130392 6130655 -117945517 + ORR1C2 LTR MaLR 1 280 -104 1 631 2945 48 0 3 chr9 6130655 6131010 -117945162 + IAPEY2_LTR LTR ERVK 1 354 -3 1 631 1262 210 64 25 chr9 6131010 6131029 -117945143 + ORR1C2 LTR MaLR 281 294 -90 1 631 709 110 56 49 chr9 6131029 6131172 -117945000 + IAPLTR4_I LTR ERVK 37 180 -1290 1 631 9177 130 11 37 chr9 6131171 6132668 -117943504 + IAPEY3-int LTR ERVK 524 1982 -5698 1 631 3414 83 7 0 chr9 6132648 6133093 -117943079 + IAPEY3-int LTR ERVK 2242 2689 -4991 1 631 194 368 44 0 chr9 6133108 6133222 -117942950 + L3b LINE CR1 335 453 -29 1 631 2907 128 18 33 chr9 6133222 6133877 -117942295 + IAPEY3-int LTR ERVK 6984 7581 0 1 631 2977 42 0 0 chr9 6133877 6134231 -117941941 + IAPEY2_LTR LTR ERVK 1 354 -3 1 631 414 85 0 0 chr9 6135517 6135576 -117940596 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 631 523 333 58 25 chr9 6135662 6135939 -117940233 - B4A SINE B4 -5 287 2 1 631 438 324 98 0 chr9 6136096 6136269 -117939903 + MLT1A1 LTR MaLR 177 366 -42 1 631 458 286 93 31 chr9 6136270 6136571 -117939601 - MTD LTR MaLR 0 419 51 1 631 595 322 75 21 chr9 6136896 6137137 -117939035 + B4A SINE B4 33 286 -6 1 631 7830 65 0 0 chr9 6137562 6138539 -117937633 + L1_Mus1 LINE L1 5589 6565 -2 1 631 393 22 0 0 chr9 6139631 6139677 -117936495 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 631 379 328 49 8 chr9 6139719 6139842 -117936330 - RSINE1 SINE B4 -30 135 8 1 631 310 322 23 0 chr9 6140562 6140649 -117935523 + RSINE1 SINE B4 48 136 -29 1 631 326 288 117 61 chr9 6141147 6141310 -117934862 - B3 SINE B2 0 216 45 1 631 339 333 103 22 chr9 6141335 6141559 -117934613 - L1MC1 LINE L1 -19 6314 6073 1 631 219 281 156 0 chr9 6141986 6142050 -117934122 + MIRc SINE MIR 82 155 -113 1 631 254 288 172 63 chr9 6142162 6142336 -117933836 + MIRc SINE MIR 52 244 -24 1 631 360 0 0 0 chr9 6142975 6143015 -117933157 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 631 432 0 0 0 chr9 6143015 6143062 -117933110 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 631 405 0 0 0 chr9 6143555 6143600 -117932572 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 631 187 237 26 0 chr9 6143984 6144022 -117932150 + L3b LINE CR1 278 316 -166 1 631 369 306 244 32 chr9 6144100 6144289 -117931883 + B4 SINE B4 42 270 -22 1 631 396 168 0 0 chr9 6144291 6144392 -117931780 + CT-rich Low_complexity Low_complexity 2 102 0 1 631 195 42 0 0 chr9 6144392 6144416 -117931756 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 631 265 277 24 104 chr9 6145318 6145443 -117930729 + L2a LINE L2 2200 2314 -1105 1 631 200 222 0 0 chr9 6145661 6145706 -117930466 + A-rich Low_complexity Low_complexity 1 45 0 1 631 282 303 83 94 chr9 6145858 6146018 -117930154 + L2a LINE L2 2820 2982 -437 1 631 1080 114 0 0 chr9 6146018 6146185 -117929987 + (CAGA)n Simple_repeat Simple_repeat 4 170 0 1 631 483 322 127 46 chr9 6146185 6146595 -117929577 + L2a LINE L2 2967 3420 -6 1 631 368 250 41 35 chr9 6146726 6146871 -117929301 - Lx8 LINE L1 0 7473 7328 1 631 494 205 16 32 chr9 6146867 6146993 -117929179 - RMER1C Other Other -12 1330 1207 1 631 184 86 13 91 chr9 6146993 6147070 -117929102 + GA-rich Low_complexity Low_complexity 2 72 0 1 631 588 95 0 0 chr9 6147051 6147135 -117929037 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 1 631 2741 271 68 9 chr9 6147148 6147901 -117928271 - RMER1C Other Other -131 1211 415 1 631 1699 295 90 18 chr9 6147913 6148273 -117927899 - Lx8 LINE L1 -137 7336 6966 1 631 342 0 0 0 chr9 6148273 6148311 -117927861 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 631 1699 295 90 18 chr9 6148311 6148620 -117927552 - Lx8 LINE L1 -508 6965 6619 1 631 21 0 0 0 chr9 6149576 6149597 -117926575 + AT_rich Low_complexity Low_complexity 1 21 0 1 631 294 113 8 102 chr9 6149802 6149930 -117926242 + T-rich Low_complexity Low_complexity 3 118 0 1 631 1107 88 7 0 chr9 6150606 6150753 -117925419 + B1_Mus1 SINE Alu 1 148 0 1 631 954 0 0 0 chr9 6150757 6150863 -117925309 + (GAA)n Simple_repeat Simple_repeat 3 108 0 1 631 224 232 0 0 chr9 6150942 6150998 -117925174 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 1 631 480 303 34 22 chr9 6151019 6151198 -117924974 - B3A SINE B2 -16 182 2 1 631 313 386 55 46 chr9 6151610 6151955 -117924217 - Kanga1d DNA Tc2 -261 348 1 1 631 29 28 0 0 chr9 6152402 6152438 -117923734 + AT_rich Low_complexity Low_complexity 1 36 0 1 631 5130 135 25 16 chr9 6152479 6153325 -117922847 - Lx3C LINE L1 -2 6974 6122 1 631 12981 125 24 119 chr9 6153325 6153891 -117922281 - L1_Mur1 LINE L1 -199 5687 5121 1 631 2408 127 32 5 chr9 6153891 6154302 -117921870 - BGLII_Mus LTR ERVK 0 422 1 1 631 12981 126 66 116 chr9 6154302 6154649 -117921523 - L1_Mur1 LINE L1 -766 5120 4773 1 631 947 126 60 0 chr9 6154649 6154831 -117921341 + BGLII_Mus LTR ERVK 82 274 -148 1 631 12981 126 66 116 chr9 6154831 6156657 -117919515 - L1_Mur1 LINE L1 -766 4772 2938 1 631 16300 161 29 28 chr9 6156672 6159877 -117916295 + Lx5 LINE L1 2489 5712 -165 1 631 1924 143 64 88 chr9 6159877 6160298 -117915874 + RLTR9F LTR ERVK 1 411 -4 1 631 16300 161 29 28 chr9 6160298 6160381 -117915791 + Lx5 LINE L1 5713 5779 -98 1 78 2209 192 63 65 chr9 6160378 6160918 -117915254 + Lx LINE L1 6116 6654 0 1 632 1252 159 21 13 chr9 6160921 6161157 -117915015 + Lx5 LINE L1 5783 6020 -1030 1 632 1153 246 124 14 chr9 6161183 6161546 -117914626 + MTD LTR MaLR 6 408 -11 2 632 21 36 0 0 chr9 6161788 6161816 -117914356 + AT_rich Low_complexity Low_complexity 1 28 0 2 632 528 283 38 28 chr9 6162536 6162747 -117913425 + B3 SINE B2 3 215 -1 2 632 284 83 0 20 chr9 6162748 6162797 -117913375 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 632 521 294 156 48 chr9 6164352 6164730 -117911442 + MTD LTR MaLR 1 419 0 2 632 349 90 0 29 chr9 6164935 6165004 -117911168 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 632 1678 174 20 47 chr9 6166348 6166751 -117909421 - RMER17C LTR ERVK 0 410 19 2 632 243 0 0 0 chr9 6167711 6167738 -117908434 + (T)n Simple_repeat Simple_repeat 1 27 0 2 632 556 261 12 61 chr9 6167827 6167990 -117908182 - ID_B1 SINE B4 0 224 70 2 632 4506 91 9 76 chr9 6170374 6171161 -117905011 - RMER17A LTR ERVK -17 734 1 2 632 378 107 0 0 chr9 6171528 6171584 -117904588 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 632 1173 48 7 7 chr9 6172583 6172729 -117903443 + B1_Mm SINE Alu 2 147 0 2 632 226 67 0 43 chr9 6172729 6172776 -117903396 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2 632 297 0 0 0 chr9 6174115 6174148 -117902024 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 632 30 0 0 0 chr9 6174174 6174204 -117901968 + AT_rich Low_complexity Low_complexity 1 30 0 2 632 186 71 0 0 chr9 6174220 6174248 -117901924 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 632 1373 300 68 9 chr9 6174262 6174719 -117901453 + RMER5 LTR ERV1 33 516 -18 2 632 825 114 8 0 chr9 6175052 6175184 -117900988 + L1_Mus2 LINE L1 6434 6566 0 2 632 23 0 0 0 chr9 6175184 6175207 -117900965 + AT_rich Low_complexity Low_complexity 1 23 0 2 632 288 0 0 0 chr9 6176271 6176303 -117899869 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2 632 285 246 15 15 chr9 6176303 6176369 -117899803 + RSINE1 SINE B4 3 68 -97 2 632 650 307 6 22 chr9 6176573 6176753 -117899419 + ID_B1 SINE B4 32 208 -16 2 632 451 141 20 20 chr9 6176769 6176870 -117899302 + (CATA)n Simple_repeat Simple_repeat 3 103 0 2 632 237 132 0 0 chr9 6176869 6176907 -117899265 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 632 29 90 0 0 chr9 6177871 6177949 -117898223 + AT_rich Low_complexity Low_complexity 1 78 0 2 632 555 232 108 14 chr9 6177956 6178170 -117898002 - L1MA8 LINE L1 -5 6286 6053 2 632 255 203 0 0 chr9 6178886 6178950 -117897222 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 632 293 329 45 15 chr9 6179027 6179323 -117896849 - L1MA4 LINE L1 -396 5904 5535 2 632 405 0 0 0 chr9 6179368 6179413 -117896759 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 632 318 247 38 25 chr9 6179859 6179938 -117896234 - MER58B DNA MER1_type 0 341 262 2 632 1964 107 48 6 chr9 6180151 6180462 -117895710 + L1_Mus4 LINE L1 6311 6634 -2 2 632 432 115 308 0 chr9 6181236 6181340 -117894832 + Lx LINE L1 6512 6647 -7 2 632 273 29 0 0 chr9 6181978 6182012 -117894160 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 632 771 61 0 0 chr9 6182012 6182110 -117894062 - B1_Mm SINE Alu -10 137 40 2 632 21 82 0 0 chr9 6182260 6182309 -117893863 + AT_rich Low_complexity Low_complexity 1 49 0 2 632 4754 123 28 1 chr9 6182592 6183631 -117892541 - Lx LINE L1 -621 6033 4956 2 632 3323 134 31 14 chr9 6183630 6184219 -117891953 + Lx LINE L1 6031 6629 -25 2 632 423 0 0 0 chr9 6184240 6184287 -117891885 + (TAA)n Simple_repeat Simple_repeat 2 48 0 2 632 3015 72 10 2 chr9 6184388 6184806 -117891366 - BGLII LTR ERVK 0 421 1 2 632 23 0 0 0 chr9 6185608 6185631 -117890541 + AT_rich Low_complexity Low_complexity 1 23 0 2 632 274 359 75 32 chr9 6186029 6186216 -117889956 + MLT1D LTR MaLR 2 196 -309 2 632 443 306 95 20 chr9 6186380 6186527 -117889645 + RSINE1 SINE B4 6 163 -2 2 632 215 193 0 34 chr9 6186528 6186587 -117889585 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 2 632 192 135 0 0 chr9 6186723 6186760 -117889412 + (A)n Simple_repeat Simple_repeat 1 37 0 2 632 22 0 0 0 chr9 6186811 6186833 -117889339 + AT_rich Low_complexity Low_complexity 1 22 0 2 632 203 250 0 22 chr9 6187641 6187686 -117888486 + polypurine Low_complexity Low_complexity 2 45 0 2 632 199 384 107 0 chr9 6188353 6188465 -117887707 + MIRm SINE MIR 153 276 0 2 632 478 325 54 6 chr9 6188534 6188701 -117887471 + Arthur1A DNA Tip100 2 176 -1 2 632 660 337 47 78 chr9 6189104 6189487 -117886685 - MLT1A LTR MaLR 0 374 4 2 632 2447 176 17 52 chr9 6189623 6190204 -117885968 - RLTR31_Mm LTR ERVK 0 561 1 2 632 190 0 32 32 chr9 6190225 6190256 -117885916 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 632 5873 203 22 73 chr9 6190304 6191220 -117884952 - RMER3D-int LTR ERVK -100 2742 1888 2 632 1007 74 44 0 chr9 6191220 6191355 -117884817 - B1_Mus1 SINE Alu -7 141 1 2 632 5873 214 56 73 chr9 6191355 6192772 -117883400 - RMER3D-int LTR ERVK -955 1887 7 2 632 278 104 20 20 chr9 6192776 6192825 -117883347 - RLTR31_Mm LTR ERVK -512 49 1 2 632 189 0 0 0 chr9 6192843 6192864 -117883308 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 632 360 0 0 0 chr9 6193551 6193591 -117882581 + (T)n Simple_repeat Simple_repeat 1 40 0 2 632 3069 191 126 6 chr9 6193816 6194256 -117881916 - RMER19A LTR ERVK 0 737 248 2 632 207 0 0 0 chr9 6194256 6194279 -117881893 + (CAAAC)n Simple_repeat Simple_repeat 1 23 0 2 632 3069 191 126 6 chr9 6194279 6194496 -117881676 - RMER19A LTR ERVK -490 247 3 2 632 262 288 26 51 chr9 6194522 6194639 -117881533 - MLT1C LTR MaLR -41 426 313 2 632 666 68 0 0 chr9 6194684 6194772 -117881400 + (TTCC)n Simple_repeat Simple_repeat 3 90 0 2 632 920 110 35 0 chr9 6194792 6194965 -117881207 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 632 273 282 12 0 chr9 6195111 6195196 -117880976 + CT-rich Low_complexity Low_complexity 2 87 0 2 632 944 173 122 0 chr9 6195510 6195707 -117880465 - URR1B DNA MER1_type 0 225 5 2 632 29 47 0 0 chr9 6196079 6196122 -117880050 + AT_rich Low_complexity Low_complexity 1 43 0 2 632 419 330 34 8 chr9 6196869 6196988 -117879184 - RSINE1 SINE B4 -36 129 8 2 632 452 310 6 0 chr9 6198857 6198997 -117877175 - MTEa LTR MaLR -233 146 1 2 632 342 0 0 0 chr9 6199086 6199124 -117877048 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 632 14659 184 24 28 chr9 6199562 6204202 -117871970 + Lx LINE L1 384 5002 -884 2 632 4102 144 1 0 chr9 6204219 6204872 -117871300 + Lx LINE L1 5598 6251 -403 2 632 400 283 30 54 chr9 6205163 6205331 -117870841 + RNLTR23 LTR ERVK 479 642 0 2 632 1626 181 40 21 chr9 6205423 6205775 -117870397 + ORR1A4 LTR MaLR 1 374 0 2 632 487 288 56 12 chr9 6207089 6207251 -117868921 - RLTR31_Mur LTR ERVK 0 553 385 2 632 822 352 31 28 chr9 6207233 6207625 -117868547 - RLTR17 LTR ERVK -175 517 125 2 632 249 336 77 53 chr9 6207783 6208082 -117868090 - MER57D LTR ERV1 -29 382 77 2 632 195 353 75 17 chr9 6209878 6210051 -117866121 - L2a LINE L2 -17 3409 3227 2 632 1137 266 89 70 chr9 6210253 6210770 -117865402 + RLTR11A2 LTR ERVK 1 527 0 2 632 441 0 0 0 chr9 6211187 6211236 -117864936 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 632 1143 50 14 0 chr9 6212293 6212433 -117863739 - B1_Mus1 SINE Alu -4 144 3 2 632 798 332 39 36 chr9 6212949 6213336 -117862836 + Kanga1c DNA Tc2 8 395 -334 2 632 27 87 0 0 chr9 6213457 6213526 -117862646 + AT_rich Low_complexity Low_complexity 1 69 0 2 632 2564 92 3 0 chr9 6213581 6213951 -117862221 + L1VL4 LINE L1 409 779 -5523 2 632 261 57 0 0 chr9 6214588 6214623 -117861549 + (CCTG)n Simple_repeat Simple_repeat 1 35 0 2 632 785 301 60 48 chr9 6214789 6215181 -117860991 - MTE2a LTR MaLR 0 419 12 2 632 472 249 121 30 chr9 6215200 6215366 -117860806 - Tigger5 DNA MER2_type -28 2378 2198 2 632 238 294 11 66 chr9 6215440 6215531 -117860641 - Tigger5 DNA MER2_type -2224 182 97 2 632 269 258 15 0 chr9 6218189 6218255 -117857917 + CT-rich Low_complexity Low_complexity 6 72 0 2 632 292 299 94 17 chr9 6218684 6218864 -117857308 + MER5C DNA MER1_type 71 264 -49 2 632 899 256 86 0 chr9 6218906 6219140 -117857032 - ORR1D2 LTR MaLR 0 370 117 2 632 499 301 30 55 chr9 6219236 6219401 -117856771 - ORR1D2 LTR MaLR -184 186 26 2 632 566 311 105 17 chr9 6220024 6220550 -117855622 - L1MC1 LINE L1 -411 5922 5351 2 632 342 61 15 29 chr9 6220772 6220840 -117855332 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 632 297 261 14 14 chr9 6222607 6222677 -117853495 + ORR1E LTR MaLR 123 192 -167 2 632 1495 74 0 53 chr9 6222878 6223106 -117853066 - L1_Mus1 LINE L1 -56 6511 6296 2 632 4421 233 58 11 chr9 6223118 6224265 -117851907 - Lx7 LINE L1 0 7696 6495 2 632 328 287 131 107 chr9 6224265 6224581 -117851591 - MLT1E1A LTR MaLR -344 336 13 2 632 1084 99 0 0 chr9 6224581 6224723 -117851449 + B1_Mus1 SINE Alu 2 143 -5 2 632 328 287 131 107 chr9 6224723 6224734 -117851438 - MLT1E1A LTR MaLR -668 12 1 2 632 12848 87 15 4 chr9 6225152 6227032 -117849140 - L1_Mus1 LINE L1 -45 5838 3937 2 632 4909 84 67 3 chr9 6227032 6227722 -117848450 + L1_Mus1 LINE L1 5833 6566 -1 2 632 12848 87 15 4 chr9 6227722 6227739 -117848433 - L1_Mm LINE L1 -1947 3936 3919 2 632 24 0 0 0 chr9 6227791 6227815 -117848357 + AT_rich Low_complexity Low_complexity 1 24 0 2 632 209 216 0 56 chr9 6228300 6228354 -117847818 + A-rich Low_complexity Low_complexity 2 52 0 2 632 199 294 137 51 chr9 6229059 6229256 -117846916 + MIRb SINE MIR 20 233 -35 2 632 318 329 13 0 chr9 6229378 6229454 -117846718 + B3A SINE B2 62 138 -60 2 632 213 39 0 0 chr9 6229694 6229720 -117846452 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 632 4764 73 0 0 chr9 6230114 6230730 -117845442 - L1Md_T LINE L1 0 6582 5967 2 632 993 296 34 39 chr9 6232261 6232616 -117843556 + ORR1E LTR MaLR 7 359 0 3 632 205 214 18 0 chr9 6233177 6233233 -117842939 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 3 632 3339 202 89 11 chr9 6233233 6234044 -117842128 - Lx5 LINE L1 0 7050 6177 3 632 2812 140 45 63 chr9 6234039 6234778 -117841394 - Lx5 LINE L1 -1067 5983 5268 3 632 809 231 33 14 chr9 6235087 6235298 -117840874 + B3 SINE B2 2 216 0 3 632 7345 101 8 6 chr9 6235457 6236968 -117839204 - L1_Mus4 LINE L1 -8 6628 5115 3 632 187 286 47 16 chr9 6237595 6237659 -117838513 + L3b LINE CR1 328 393 -89 3 632 1533 191 34 128 chr9 6237719 6237815 -117838357 - ORR1C1 LTR MaLR 0 378 299 3 632 1529 72 0 0 chr9 6237815 6238008 -117838164 - B2_Mm1t SINE B2 0 193 1 3 632 1533 191 34 128 chr9 6238008 6238326 -117837846 - ORR1C1 LTR MaLR -80 298 3 3 632 315 278 168 13 chr9 6238452 6238678 -117837494 + Lx8 LINE L1 6852 7112 -361 3 632 231 114 0 0 chr9 6240256 6240291 -117835881 + (T)n Simple_repeat Simple_repeat 1 35 0 3 632 648 241 21 0 chr9 6240306 6240447 -117835725 - B1_Mur4 SINE Alu -6 144 1 3 632 935 304 49 0 chr9 6242731 6243057 -117833115 + MTEa LTR MaLR 1 342 -37 3 632 549 340 80 48 chr9 6243149 6243486 -117832686 - ORR1E LTR MaLR -4 355 8 3 632 239 289 49 110 chr9 6243718 6243868 -117832304 + B2_Mm2 SINE B2 60 188 -5 3 632 826 90 8 16 chr9 6243946 6244070 -117832102 + B1_Mm SINE Alu 25 147 0 3 632 24 32 0 0 chr9 6244183 6244214 -117831958 + AT_rich Low_complexity Low_complexity 1 31 0 3 632 373 257 20 40 chr9 6244915 6245065 -117831107 + L1MC LINE L1 5652 5798 -535 3 632 1899 176 67 27 chr9 6246767 6247170 -117829002 + MTC LTR MaLR 1 419 -2 3 632 598 289 20 41 chr9 6247588 6247783 -117828389 + B3A SINE B2 1 191 -7 3 632 255 103 0 0 chr9 6247922 6247961 -117828211 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3 632 449 76 15 0 chr9 6247978 6248044 -117828128 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 632 245 187 13 0 chr9 6248816 6248891 -117827281 + GA-rich Low_complexity Low_complexity 1 76 0 3 632 249 111 86 0 chr9 6250677 6250758 -117825414 + T-rich Low_complexity Low_complexity 3 90 0 3 632 372 166 229 57 chr9 6251254 6251355 -117824817 - RMER17C LTR ERVK -6 404 274 3 632 225 0 0 0 chr9 6251355 6251380 -117824792 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 632 414 0 0 0 chr9 6251380 6251425 -117824747 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 632 372 174 181 50 chr9 6251425 6251542 -117824630 - RMER17C LTR ERVK -137 273 59 3 632 45 34 0 0 chr9 6252449 6252508 -117823664 + AT_rich Low_complexity Low_complexity 1 59 0 3 632 27 0 0 0 chr9 6254973 6255000 -117821172 + AT_rich Low_complexity Low_complexity 1 27 0 3 632 21 0 0 0 chr9 6255392 6255413 -117820759 + AT_rich Low_complexity Low_complexity 1 21 0 3 632 1100 110 0 0 chr9 6255484 6255630 -117820542 + B1_Mus1 SINE Alu 2 147 -1 3 632 1371 89 11 0 chr9 6256388 6256579 -117819593 + B2_Mm1t SINE B2 1 193 0 3 632 532 282 63 0 chr9 6256620 6256762 -117819410 + B3A SINE B2 2 152 -46 3 632 297 0 0 0 chr9 6256763 6256796 -117819376 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 632 251 319 204 20 chr9 6257254 6257351 -117818821 + B4A SINE B4 2 118 -174 3 632 234 0 0 0 chr9 6257351 6257377 -117818795 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 632 251 319 204 20 chr9 6257377 6257426 -117818746 + B4A SINE B4 119 174 -118 3 632 510 57 0 0 chr9 6257550 6257620 -117818552 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 632 262 279 101 0 chr9 6258072 6258151 -117818021 - Lx8 LINE L1 -215 7258 7172 3 632 601 221 56 28 chr9 6258295 6258439 -117817733 - B1_Mur3 SINE Alu -1 148 1 3 632 288 246 46 0 chr9 6258439 6258504 -117817668 - B1_Mus2 SINE Alu -79 68 1 3 632 24 0 0 0 chr9 6258648 6258672 -117817500 + AT_rich Low_complexity Low_complexity 1 24 0 3 632 6826 77 11 3 chr9 6258811 6260410 -117815762 + L1_Mus2 LINE L1 4956 6565 -1 3 632 198 0 0 0 chr9 6260519 6260541 -117815631 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 632 6039 179 42 21 chr9 6260628 6261833 -117814339 - Lx3C LINE L1 -2 6974 5745 3 632 467 336 21 0 chr9 6262858 6262998 -117813174 - RSINE1 SINE B4 -20 145 3 3 632 22 0 0 0 chr9 6263414 6263436 -117812736 + AT_rich Low_complexity Low_complexity 1 22 0 3 632 439 303 16 27 chr9 6263449 6263632 -117812540 - B3A SINE B2 -16 182 2 3 632 626 325 24 24 chr9 6264218 6264426 -117811746 + ID_B1 SINE B4 12 219 -5 3 632 409 301 238 72 chr9 6264441 6264689 -117811483 + B4A SINE B4 4 292 0 3 632 284 308 29 9 chr9 6266564 6266669 -117809503 + MamRep1161 DNA TcMar 38 144 -813 3 632 399 309 104 75 chr9 6268200 6268480 -117807692 - B4A SINE B4 0 292 5 3 632 1254 162 0 43 chr9 6269494 6269726 -117806446 - URR1A DNA MER1_type 0 226 5 3 632 642 298 88 66 chr9 6269961 6270234 -117805938 + B4 SINE B4 12 290 -2 3 632 378 0 0 0 chr9 6270259 6270301 -117805871 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 632 358 79 32 0 chr9 6270304 6270367 -117805805 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 632 695 84 65 0 chr9 6271297 6271404 -117804768 - MT2C_Mm LTR ERVL 0 475 362 3 632 1742 62 66 4 chr9 6271383 6271627 -117804545 - MT2C_Mm LTR ERVL -216 259 1 3 632 277 22 21 43 chr9 6271923 6271970 -117804202 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 3 632 498 276 62 7 chr9 6274304 6274450 -117801722 - Lx8 LINE L1 -151 7322 7169 3 632 180 273 36 83 chr9 6275540 6275624 -117800548 - L4 LINE RTE -1743 286 207 3 632 262 236 18 0 chr9 6277260 6277315 -117798857 - MLT1H LTR MaLR -17 532 477 3 632 267 130 0 0 chr9 6278139 6278193 -117797979 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 632 1602 37 0 0 chr9 6278286 6278476 -117797696 - B2_Mm1a SINE B2 -2 191 2 3 632 533 235 118 0 chr9 6278492 6278611 -117797561 - RSINE1 SINE B4 -22 143 11 3 632 227 236 181 0 chr9 6278547 6278619 -117797553 - B2_Mm1t SINE B2 -107 86 2 3 632 26 0 0 0 chr9 6278646 6278672 -117797500 + AT_rich Low_complexity Low_complexity 1 26 0 3 632 597 245 184 101 chr9 6280133 6280469 -117795703 - MTE2a LTR MaLR -15 364 1 3 632 221 368 96 0 chr9 6282045 6282181 -117793991 + B4A SINE B4 15 163 -129 3 632 505 241 67 25 chr9 6282760 6282879 -117793293 + ID_B1 SINE B4 87 210 -14 3 632 285 75 0 0 chr9 6282882 6282922 -117793250 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 3 632 240 100 0 0 chr9 6282947 6282987 -117793185 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 632 331 309 96 32 chr9 6284416 6284603 -117791569 + MIRb SINE MIR 70 268 0 3 632 478 324 63 78 chr9 6285004 6285195 -117790977 - B4A SINE B4 -104 188 1 3 632 6279 100 31 1 chr9 6285201 6286392 -117789780 + L1_Mus4 LINE L1 5231 6467 -169 3 632 912 326 97 19 chr9 6288807 6289117 -117787055 - MTE2b LTR MaLR -45 334 1 3 632 673 240 0 0 chr9 6290108 6290233 -117785939 - MTE2b LTR MaLR 0 379 255 3 632 3083 48 5 18 chr9 6290244 6290593 -117785579 + MTA_Mm LTR MaLR 1 346 -50 3 632 4334 49 0 0 chr9 6290593 6291124 -117785048 - L1Md_F2 LINE L1 -1 6581 6051 3 632 3083 48 5 18 chr9 6291124 6291175 -117784997 + MTA_Mm LTR MaLR 347 396 0 3 632 821 299 28 0 chr9 6291175 6291384 -117784788 - MTE2b LTR MaLR -147 232 18 3 9 560 321 116 12 chr9 6291446 6291765 -117784407 - MER21B LTR ERV1 -113 750 399 3 633 276 342 74 98 chr9 6291814 6292070 -117784102 - MER21B LTR ERV1 -573 290 41 3 633 21 0 0 0 chr9 6292396 6292417 -117783755 + AT_rich Low_complexity Low_complexity 1 21 0 3 633 393 22 0 0 chr9 6294209 6294255 -117781917 + (TGG)n Simple_repeat Simple_repeat 2 47 0 3 633 504 86 0 0 chr9 6295164 6295234 -117780938 + (CTTA)n Simple_repeat Simple_repeat 1 70 0 3 633 429 81 0 0 chr9 6295415 6295477 -117780695 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 633 914 231 31 90 chr9 6295792 6296082 -117780090 - Lx8 LINE L1 -943 6530 6258 3 633 676 292 64 12 chr9 6296102 6296275 -117779897 - B4A SINE B4 -109 183 2 3 633 1495 249 101 51 chr9 6296431 6297000 -117779172 - RLTR18 LTR ERVK 0 616 1 3 633 562 106 9 19 chr9 6298219 6298325 -117777847 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 3 633 396 263 3 32 chr9 6298339 6298460 -117777712 + MTD LTR MaLR 12 131 -290 3 633 484 241 90 0 chr9 6298507 6298640 -117777532 + MTD LTR MaLR 222 366 -53 3 633 23 0 0 0 chr9 6299453 6299476 -117776696 + AT_rich Low_complexity Low_complexity 1 23 0 3 633 23 86 0 0 chr9 6299918 6299976 -117776196 + AT_rich Low_complexity Low_complexity 1 58 0 3 633 207 0 0 0 chr9 6300367 6300390 -117775782 + (A)n Simple_repeat Simple_repeat 1 23 0 3 633 271 271 20 23 chr9 6300619 6300736 -117775436 + B1F SINE Alu 13 149 0 3 633 747 88 0 0 chr9 6300744 6300857 -117775315 + (GA)n Simple_repeat Simple_repeat 2 114 0 3 633 359 281 0 0 chr9 6300874 6300962 -117775210 + ID4 SINE ID 12 99 -53 3 633 315 0 0 0 chr9 6301016 6301051 -117775121 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 633 387 0 0 0 chr9 6301094 6301137 -117775035 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 633 3344 40 2 0 chr9 6301569 6301964 -117774208 - MTA_Mm LTR MaLR 0 396 1 3 633 329 315 120 23 chr9 6302618 6302751 -117773421 + RSINE1 SINE B4 4 149 -16 3 633 267 31 0 0 chr9 6302756 6302788 -117773384 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 633 451 341 106 53 chr9 6303499 6303802 -117772370 - MLT1A0 LTR MaLR -17 348 30 3 633 21 71 0 0 chr9 6304313 6304355 -117771817 + AT_rich Low_complexity Low_complexity 1 42 0 3 633 356 306 35 26 chr9 6304589 6304703 -117771469 + PB1D10 SINE Alu 1 115 -2 3 633 515 285 16 77 chr9 6304703 6304897 -117771275 + B3A SINE B2 1 182 -16 4 633 1100 81 0 7 chr9 6305572 6305721 -117770451 + B1_Mus1 SINE Alu 1 148 0 4 633 9068 161 28 7 chr9 6306002 6307882 -117768290 + Lx LINE L1 4158 6081 -573 4 633 854 235 84 135 chr9 6307882 6308296 -117767876 - RLTR9C LTR ERVK 0 393 1 4 633 6328 135 23 23 chr9 6308296 6308879 -117767293 + Lx LINE L1 6082 6654 0 4 633 201 175 0 0 chr9 6309536 6309576 -117766596 + GA-rich Low_complexity Low_complexity 4 43 0 4 633 331 296 40 17 chr9 6309588 6309763 -117766409 + GA-rich Low_complexity Low_complexity 1 179 0 4 633 1089 244 86 18 chr9 6309880 6310159 -117766013 + MTD LTR MaLR 3 300 -119 4 633 528 326 107 68 chr9 6310233 6310333 -117765839 - B4A SINE B4 -18 274 154 4 633 930 150 198 0 chr9 6310333 6310520 -117765652 + URR1B DNA MER1_type 1 224 -1 4 633 528 326 107 68 chr9 6310520 6310682 -117765490 - B4A SINE B4 -139 153 2 4 633 1609 341 70 12 chr9 6310733 6311535 -117764637 - Lx8 LINE L1 -375 7098 6251 4 633 180 0 0 0 chr9 6312442 6312462 -117763710 + (A)n Simple_repeat Simple_repeat 1 20 0 4 633 613 223 8 8 chr9 6312536 6312658 -117763514 - RSINE1 SINE B4 -42 123 2 4 633 574 162 17 0 chr9 6312684 6312801 -117763371 + GA-rich Low_complexity Low_complexity 2 120 0 4 633 242 272 0 36 chr9 6312831 6312915 -117763257 + GA-rich Low_complexity Low_complexity 1 81 0 4 633 1407 267 33 28 chr9 6312957 6313346 -117762826 - Lx5 LINE L1 -3 7047 6657 4 633 651 288 36 42 chr9 6313533 6313836 -117762336 - ORR1E LTR MaLR -6 353 1 4 633 320 140 43 0 chr9 6314512 6314605 -117761567 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 633 198 0 0 0 chr9 6315649 6315671 -117760501 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4 633 316 238 38 0 chr9 6315880 6315960 -117760212 + GA-rich Low_complexity Low_complexity 3 85 0 4 633 1115 280 51 35 chr9 6315972 6316283 -117759889 - MTE2b LTR MaLR -61 318 3 4 633 4537 161 67 26 chr9 6316641 6317445 -117758727 + RMER19B LTR ERVK 1 837 -65 4 633 1101 182 114 75 chr9 6317451 6317706 -117758466 - RMER19B LTR ERVK -637 265 1 4 633 262 224 0 17 chr9 6317715 6317774 -117758398 + RMER19B LTR ERVK 844 901 -1 4 633 501 17 0 0 chr9 6319787 6319845 -117756327 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 633 378 0 0 0 chr9 6319846 6319888 -117756284 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 633 1089 293 45 10 chr9 6320101 6320415 -117755757 + MTE2b LTR MaLR 55 379 0 4 633 7495 208 54 64 chr9 6321468 6324344 -117751828 - Lx6 LINE L1 -10 7450 4633 4 633 612 40 0 0 chr9 6324344 6324419 -117751753 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 633 5368 188 55 99 chr9 6324419 6324664 -117751508 - Lx6 LINE L1 -1248 4632 4384 4 633 815 273 10 0 chr9 6324676 6324885 -117751287 - B3 SINE B2 -3 213 3 4 633 270 0 0 0 chr9 6325061 6325091 -117751081 + (T)n Simple_repeat Simple_repeat 1 30 0 4 633 528 267 0 8 chr9 6325497 6325618 -117750554 + B3A SINE B2 3 122 -76 4 633 474 91 0 0 chr9 6326942 6327019 -117749153 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 633 382 171 61 0 chr9 6327397 6327479 -117748693 + B1_Mus2 SINE Alu 61 147 0 4 633 1168 82 0 0 chr9 6327910 6328057 -117748115 - B1_Mus2 SINE Alu 0 147 1 4 633 401 333 9 0 chr9 6328057 6328165 -117748007 + RSINE1 SINE B4 51 159 -6 4 633 183 129 0 0 chr9 6328190 6328221 -117747951 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 633 26 0 0 0 chr9 6328585 6328611 -117747561 + AT_rich Low_complexity Low_complexity 1 26 0 4 633 237 363 107 39 chr9 6329330 6329668 -117746504 - L2a LINE L2 -150 3276 2916 4 633 189 0 0 0 chr9 6329855 6329876 -117746296 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 633 257 276 0 13 chr9 6330246 6330323 -117745849 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 633 337 309 103 77 chr9 6330345 6330618 -117745554 - B4 SINE B4 -10 282 3 4 633 401 129 14 0 chr9 6330655 6330725 -117745447 + (GGGAA)n Simple_repeat Simple_repeat 2 72 0 4 633 465 34 0 0 chr9 6330728 6330787 -117745385 + (CAGAGA)n Simple_repeat Simple_repeat 3 61 0 4 633 408 82 0 0 chr9 6332503 6332564 -117743608 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 633 295 320 138 44 chr9 6332882 6333085 -117743087 - MIRb SINE MIR 0 268 47 4 633 646 296 92 13 chr9 6334087 6334402 -117741770 + Lx8 LINE L1 6974 7313 -160 4 633 180 0 0 0 chr9 6334572 6334592 -117741580 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 633 180 0 0 0 chr9 6335611 6335631 -117740541 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 633 627 305 81 14 chr9 6335798 6336124 -117740048 - Lx8 LINE L1 -160 7313 6949 4 633 225 0 0 0 chr9 6336511 6336536 -117739636 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 633 714 326 19 93 chr9 6337672 6337723 -117738449 + B4A SINE B4 5 46 -246 4 633 2716 106 5 41 chr9 6337723 6338138 -117738034 - RLTR9D LTR ERVK 0 403 4 4 633 714 326 19 93 chr9 6338138 6338397 -117737775 + B4A SINE B4 47 292 0 4 633 825 26 0 9 chr9 6339306 6339420 -117736752 + L1Md_F3 LINE L1 6458 6570 -14 4 633 236 358 0 0 chr9 6340623 6340690 -117735482 - ID2 SINE ID -2 81 15 4 633 427 269 24 53 chr9 6341621 6341790 -117734382 + RLTR15 LTR ERVK 33 196 -163 4 633 281 294 47 86 chr9 6341816 6342050 -117734122 + RLTR15 LTR ERVK 106 330 -29 4 633 333 68 0 0 chr9 6342078 6342122 -117734050 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 633 273 253 107 0 chr9 6342166 6342241 -117733931 - PB1D7 SINE Alu -26 94 12 4 633 230 174 25 138 chr9 6343105 6343185 -117732987 + ID4 SINE ID 2 72 -11 4 633 333 68 0 0 chr9 6343185 6343229 -117732943 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 633 2723 50 3 17 chr9 6343430 6343778 -117732394 + L1_Mus1 LINE L1 6224 6566 -1 4 633 1814 212 206 13 chr9 6344367 6344837 -117731335 - RLTR20B1 LTR ERVK -2 561 1 4 633 241 260 40 40 chr9 6345703 6345779 -117730393 - MIRc SINE MIR -99 169 94 4 633 208 36 16 97 chr9 6345882 6345944 -117730228 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 4 633 234 301 95 21 chr9 6346127 6346222 -117729950 + MIRb SINE MIR 64 165 -103 4 633 207 0 0 0 chr9 6347111 6347134 -117729038 + (A)n Simple_repeat Simple_repeat 1 23 0 4 633 7530 101 4 4 chr9 6348456 6350334 -117725838 - L1_Mus1 LINE L1 0 6567 4690 4 633 2984 178 35 81 chr9 6350332 6351865 -117724307 - L1_Mus1 LINE L1 -4119 1764 264 4 633 1061 293 38 24 chr9 6352665 6352955 -117723217 + MTE2a LTR MaLR 86 379 0 4 633 27 0 0 0 chr9 6354116 6354143 -117722029 + AT_rich Low_complexity Low_complexity 1 27 0 4 633 3140 202 61 42 chr9 6354810 6355741 -117720431 + L1_Mus1 LINE L1 98 963 -5653 4 633 16760 112 17 5 chr9 6355732 6357332 -117718840 + L1_Mus1 LINE L1 3115 4734 -1149 4 633 231 36 0 0 chr9 6357332 6357360 -117718812 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 633 16760 96 15 3 chr9 6357360 6359175 -117716997 + L1_Mus1 LINE L1 4735 6567 0 4 633 209 113 0 54 chr9 6359251 6359307 -117716865 + T-rich Low_complexity Low_complexity 1 53 0 4 633 469 271 32 8 chr9 6359338 6359461 -117716711 + ID_B1 SINE B4 92 217 -7 4 633 249 158 0 0 chr9 6360029 6360067 -117716105 + B3A SINE B2 3 40 -158 4 633 267 114 0 0 chr9 6360100 6360144 -117716028 + (T)n Simple_repeat Simple_repeat 1 44 0 4 633 195 42 0 0 chr9 6360300 6360324 -117715848 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 633 422 108 12 0 chr9 6360344 6360427 -117715745 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 633 674 245 26 0 chr9 6360527 6360682 -117715490 + B3 SINE B2 57 215 -1 4 633 1521 262 109 58 chr9 6360858 6361465 -117714707 - RLTR26 LTR ERVK -4 638 1 4 633 469 274 0 112 chr9 6362163 6362315 -117713857 + B1F SINE Alu 1 135 -14 4 633 651 40 30 0 chr9 6362320 6362419 -117713753 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 4 633 3373 116 62 8 chr9 6364553 6365083 -117711089 + Lx2 LINE L1 6439 6997 0 4 633 583 330 55 65 chr9 6365287 6365579 -117710593 + B4A SINE B4 4 292 0 4 633 267 103 0 0 chr9 6365593 6365632 -117710540 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 633 250 291 70 0 chr9 6365785 6365871 -117710301 - MER34 LTR ERV1 -76 466 375 4 633 26 30 0 0 chr9 6366214 6366247 -117709925 + AT_rich Low_complexity Low_complexity 1 33 0 4 633 243 171 0 0 chr9 6366407 6366448 -117709724 - MT2A LTR ERVL 0 533 493 4 633 297 0 0 0 chr9 6366448 6366481 -117709691 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 633 670 162 7 7 chr9 6366481 6366618 -117709554 + GA-rich Low_complexity Low_complexity 2 138 0 4 633 312 321 116 0 chr9 6366812 6366924 -117709248 - MTE2a LTR MaLR -254 125 1 4 633 27910 109 12 8 chr9 6367078 6372114 -117704058 - L1_Mus1 LINE L1 0 6567 1499 4 633 1067 102 0 0 chr9 6372114 6372261 -117703911 - B1_Mus1 SINE Alu 0 148 2 4 633 27910 96 25 5 chr9 6372261 6372594 -117703578 - L1_Mus1 LINE L1 -4385 1498 1168 4 633 364 263 26 22 chr9 6372663 6372867 -117703305 - L1_Mus1 LINE L1 -6040 598 303 4 633 253 164 0 0 chr9 6372903 6372958 -117703214 - L1Md_F LINE L1 -5446 1073 1019 4 633 22 35 0 0 chr9 6377779 6377808 -117698364 + AT_rich Low_complexity Low_complexity 1 29 0 4 633 3893 201 66 24 chr9 6380430 6381348 -117694824 - Lx7 LINE L1 0 7696 6740 4 633 6827 94 14 2 chr9 6381345 6382530 -117693642 + L1_Mus4 LINE L1 5389 6587 -49 4 633 786 84 0 96 chr9 6382531 6382729 -117693443 + GA-rich Low_complexity Low_complexity 2 180 0 4 633 2561 226 23 7 chr9 6382739 6383309 -117692863 - Lx7 LINE L1 -984 6712 6134 4 633 1969 164 19 32 chr9 6383309 6383362 -117692810 - ORR1B2 LTR MaLR 0 367 319 4 633 5996 63 10 16 chr9 6383362 6384155 -117692017 - L1_Mus2 LINE L1 -2 6564 5777 4 633 1969 164 19 32 chr9 6384155 6384473 -117691699 - ORR1B2 LTR MaLR -49 318 1 4 633 2419 191 41 21 chr9 6384473 6385293 -117690879 - Lx7 LINE L1 -1558 6138 5302 4 633 2175 113 8 0 chr9 6385288 6385660 -117690512 - Lx3A LINE L1 -1958 3928 3554 4 633 12552 98 26 9 chr9 6385658 6388645 -117687527 + Lx3A LINE L1 3940 6969 -12 4 633 252 86 0 0 chr9 6388645 6388680 -117687492 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 633 1990 153 41 43 chr9 6388847 6389067 -117687105 - Lx7 LINE L1 -834 5046 4828 4 633 227 0 91 0 chr9 6389067 6389100 -117687072 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 633 6037 231 99 22 chr9 6389100 6390209 -117685963 - Lx7 LINE L1 -1053 4827 3098 4 633 554 225 175 62 chr9 6390209 6390403 -117685769 - B3 SINE B2 0 216 1 4 633 6037 194 67 19 chr9 6390403 6390487 -117685685 - Lx7 LINE L1 -2783 3097 2979 4 633 324 0 0 0 chr9 6390487 6390523 -117685649 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 633 6037 194 67 19 chr9 6390523 6391924 -117684248 - Lx7 LINE L1 -2902 2978 1563 4 633 245 29 0 29 chr9 6391993 6392028 -117684144 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 633 519 239 14 40 chr9 6392129 6392277 -117683895 - RLTR45-int LTR ERVK -3654 3590 3447 5 633 2636 197 28 59 chr9 6392286 6393037 -117683135 - MMETn-int LTR ERVK -3681 1163 436 5 633 3399 132 16 14 chr9 6393046 6393598 -117682574 + RLTR1D LTR ERV1 37 589 -16 5 633 1535 191 10 134 chr9 6393614 6394115 -117682057 - MMETn-int LTR ERVK -4405 439 1 5 633 708 222 137 62 chr9 6394116 6394457 -117681715 - RLTRETN_Mm LTR ERVK 0 403 1 5 633 7859 123 5 2 chr9 6394461 6395723 -117680449 - L1Md_F LINE L1 -54 5829 4564 5 633 13242 143 48 11 chr9 6395722 6398984 -117677188 - L1Md_F LINE L1 -2385 3498 112 5 633 334 190 23 23 chr9 6398984 6399070 -117677102 - L1Md_F LINE L1 -6354 165 80 5 633 384 22 0 0 chr9 6399906 6399951 -117676221 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 5 633 339 289 58 50 chr9 6399951 6400060 -117676112 - B1F2 SINE Alu -12 137 28 5 633 213 305 17 0 chr9 6400582 6400641 -117675531 - L2b LINE L2 0 3375 3316 5 633 187 339 125 11 chr9 6400807 6400983 -117675189 - L2b LINE L2 -342 3077 2882 5 633 279 0 0 0 chr9 6401613 6401644 -117674528 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 633 211 301 25 76 chr9 6402355 6402434 -117673738 - L2b LINE L2 -4 3371 3297 5 633 591 292 173 9 chr9 6402531 6402762 -117673410 + B4A SINE B4 6 274 -18 5 633 371 21 0 20 chr9 6402836 6402885 -117673287 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 633 441 0 0 0 chr9 6402885 6402933 -117673239 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 633 277 268 69 11 chr9 6402987 6403074 -117673098 - MER20 DNA MER1_type -21 198 107 5 633 296 295 0 0 chr9 6403149 6403254 -117672918 + L1MA4A LINE L1 5783 5887 -416 5 633 233 248 146 13 chr9 6403497 6403648 -117672524 + L1MA4A LINE L1 6106 6276 -24 5 633 230 312 21 11 chr9 6404126 6404220 -117671952 + Charlie12 DNA MER1_type 28 122 -2751 5 633 427 272 60 58 chr9 6404253 6404470 -117671702 - MTEb LTR MaLR -19 360 121 5 633 555 90 0 0 chr9 6404505 6404583 -117671589 + (GGA)n Simple_repeat Simple_repeat 2 79 0 5 633 330 223 13 6 chr9 6405039 6405197 -117670975 + (TG)n Simple_repeat Simple_repeat 1 159 0 5 633 1429 138 263 36 chr9 6405262 6405570 -117670602 - ORR1C1 LTR MaLR 0 378 1 5 633 21 71 0 0 chr9 6405909 6405951 -117670221 + AT_rich Low_complexity Low_complexity 1 42 0 5 633 236 209 0 0 chr9 6407349 6407392 -117668780 - MTEb LTR MaLR -378 43 1 5 633 341 286 175 21 chr9 6408626 6408707 -117667465 + ID_B1 SINE B4 2 101 -123 5 633 1198 215 50 108 chr9 6408707 6409021 -117667151 + ORR1D1 LTR MaLR 1 305 -69 5 633 699 223 7 20 chr9 6409021 6409172 -117667000 + B1_Mur4 SINE Alu 2 150 0 5 633 1198 215 50 108 chr9 6409172 6409254 -117666918 + ORR1D1 LTR MaLR 306 374 0 5 633 341 286 175 21 chr9 6409254 6409361 -117666811 + ID_B1 SINE B4 102 218 -6 5 633 225 318 11 76 chr9 6410209 6410301 -117665871 + L2a LINE L2 3329 3414 -12 5 633 388 261 24 40 chr9 6411310 6411434 -117664738 + MER54B LTR ERVL 1 122 -671 5 633 636 304 140 9 chr9 6411499 6411728 -117664444 + MER54B LTR ERVL 531 789 -4 5 633 6749 97 21 6 chr9 6412510 6413543 -117662629 - L1_Mus3 LINE L1 -3 6635 5587 5 633 861 117 0 0 chr9 6413959 6414087 -117662085 - L1_Mus3 LINE L1 -312 5571 5444 5 633 396 40 0 0 chr9 6414138 6414188 -117661984 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 633 259 302 77 28 chr9 6415086 6415229 -117660943 - MamRep137 DNA TcMar? -90 354 205 5 633 450 0 0 0 chr9 6416070 6416120 -117660052 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 633 369 333 42 8 chr9 6416154 6416272 -117659900 + B4A SINE B4 3 124 -168 5 633 237 296 109 34 chr9 6416303 6416422 -117659750 + MLT1A0 LTR MaLR 183 310 -55 5 633 806 245 10 15 chr9 6416426 6416621 -117659551 - Lx6 LINE L1 -31 7429 7236 5 633 1129 291 111 40 chr9 6416716 6416968 -117659204 + MT2A LTR ERVL 5 264 -269 5 633 1622 236 22 0 chr9 6416968 6417333 -117658839 + ORR1D1 LTR MaLR 1 373 -1 5 633 1129 291 111 40 chr9 6417333 6417574 -117658598 + MT2A LTR ERVL 265 532 -1 5 633 453 327 7 26 chr9 6419135 6419286 -117656886 - B4 SINE B4 -125 167 20 5 633 3388 30 5 0 chr9 6419588 6419982 -117656190 + MTA_Mm LTR MaLR 1 396 0 5 633 187 385 45 22 chr9 6420953 6421131 -117655041 + MER5A DNA MER1_type 8 189 0 5 633 581 302 37 20 chr9 6421589 6421803 -117654369 + MLT2C2 LTR ERVL 115 333 -64 5 633 198 0 0 0 chr9 6422218 6422240 -117653932 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 5 633 318 286 0 12 chr9 6422240 6422325 -117653847 - B1F SINE Alu 0 149 66 5 633 24 32 0 0 chr9 6422393 6422424 -117653748 + AT_rich Low_complexity Low_complexity 1 31 0 5 634 401 141 0 34 chr9 6422542 6422630 -117653542 - L1Md_A LINE L1 0 6582 6498 5 634 272 361 114 52 chr9 6423522 6423715 -117652457 + B4 SINE B4 15 219 -73 5 634 30 0 0 0 chr9 6424968 6424998 -117651174 + AT_rich Low_complexity Low_complexity 1 30 0 5 634 272 119 17 0 chr9 6425118 6425177 -117650995 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 5 634 1133 82 0 0 chr9 6425178 6425324 -117650848 - B1_Mus2 SINE Alu 0 147 2 5 634 648 285 131 41 chr9 6425637 6425904 -117650268 - B4A SINE B4 0 292 2 5 634 458 272 99 76 chr9 6426243 6426454 -117649718 + LTR41B LTR ERVL 543 758 0 5 634 3669 97 26 55 chr9 6426667 6427248 -117648924 + LTRIS2 LTR ERV1 1 564 0 5 634 25 0 0 0 chr9 6427632 6427657 -117648515 + AT_rich Low_complexity Low_complexity 1 25 0 5 634 246 32 0 0 chr9 6427716 6427747 -117648425 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 634 3150 43 2 17 chr9 6427877 6428186 -117647986 - MTA_Mm LTR MaLR 0 396 93 5 634 2318 72 119 11 chr9 6428186 6428538 -117647634 + RLTR10 LTR ERVK 1 390 0 5 634 3150 43 2 17 chr9 6428538 6428630 -117647542 - MTA_Mm LTR MaLR -304 92 1 5 634 342 0 0 0 chr9 6429886 6429924 -117646248 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 634 272 357 72 32 chr9 6430178 6430609 -117645563 + ERVL-E-int LTR ERVL 3124 3571 -2096 5 634 598 98 11 21 chr9 6430694 6430787 -117645385 - URR1B DNA MER1_type 0 225 134 5 634 233 335 93 68 chr9 6430787 6430992 -117645180 - RLTR8 LTR ERVK 0 365 156 5 634 589 157 174 0 chr9 6431196 6431311 -117644861 - URR1B DNA MER1_type -91 134 1 5 634 8127 25 0 0 chr9 6431502 6432774 -117643398 - L1Md_T LINE L1 0 6582 5311 5 634 258 326 48 7 chr9 6433574 6433719 -117642453 + ERVL-E-int LTR ERVL 5023 5173 -494 5 634 922 315 92 36 chr9 6434107 6434466 -117641706 - MTEb LTR MaLR 0 379 1 5 634 465 289 116 6 chr9 6434466 6434647 -117641525 - MTEb-int LTR MaLR 0 1580 1380 5 634 527 209 15 37 chr9 6434838 6434972 -117641200 - Lx7 LINE L1 0 7696 7566 5 634 305 267 106 78 chr9 6435040 6435219 -117640953 - RLTR41 LTR ERV1 0 446 263 5 634 304 200 0 94 chr9 6435573 6435722 -117640450 - Lx7 LINE L1 -207 7489 7355 5 634 970 329 67 6 chr9 6435841 6436421 -117639751 + L1_Mur3 LINE L1 17 684 -7044 5 634 12828 189 62 22 chr9 6436417 6439699 -117636473 + L1_Mur3 LINE L1 859 4267 -1613 5 634 180 0 0 0 chr9 6439699 6439719 -117636453 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 634 12828 189 64 25 chr9 6439719 6440060 -117636112 + L1_Mur3 LINE L1 4268 4632 -1248 5 634 4826 169 18 52 chr9 6440098 6441874 -117634298 + L1Md_F LINE L1 324 1953 -1864 5 634 4297 97 3 5 chr9 6441878 6442487 -117633685 + L1_Mus2 LINE L1 5959 6566 0 5 634 36345 13 3 7 chr9 6442511 6447921 -117628251 + L1Md_A LINE L1 204 5586 -297 5 634 8876 13 0 0 chr9 6447921 6448917 -117627255 + L1Md_A LINE L1 5587 6582 0 5 634 1383 214 129 54 chr9 6448917 6449206 -117626966 + Lx6 LINE L1 4651 4947 -933 5 634 264 122 0 0 chr9 6449206 6449247 -117626925 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 634 1383 214 129 54 chr9 6449247 6449476 -117626696 + Lx6 LINE L1 4948 5207 -673 5 634 509 194 0 0 chr9 6449480 6449583 -117626589 + Lx6 LINE L1 5655 5757 -123 5 634 286 227 22 43 chr9 6450281 6450373 -117625799 + RMER3D-int LTR ERVK 1022 1111 -1731 5 634 771 235 12 51 chr9 6450633 6450889 -117625283 + RMER3D-int LTR ERVK 1133 1378 -1464 5 634 2158 212 94 45 chr9 6450920 6451523 -117624649 + MYSERV16_I-int LTR ERVK 301 933 -1393 5 634 5348 157 54 4 chr9 6451528 6452657 -117623515 + MYSERV16_I-int LTR ERVK 1067 2251 -75 5 634 2402 211 17 79 chr9 6452710 6452940 -117623232 + RLTR16 LTR ERVK 6 201 -377 5 634 2635 109 48 80 chr9 6452940 6453438 -117622734 + RLTR45 LTR ERVK 1 482 0 5 634 672 93 0 0 chr9 6453438 6453535 -117622637 + (GGAGA)n Simple_repeat Simple_repeat 5 101 0 5 634 2402 197 6 90 chr9 6453535 6453893 -117622279 + RLTR16 LTR ERVK 154 504 -1 5 634 1448 264 81 11 chr9 6453893 6454363 -117621809 + Lx6 LINE L1 6264 6766 -694 5 634 1270 232 49 3 chr9 6454448 6454733 -117621439 + Lx6 LINE L1 6912 7209 -251 5 634 1276 260 54 78 chr9 6454889 6455336 -117620836 - RMER10A LTR ERVL 0 442 7 5 634 594 247 129 81 chr9 6457700 6457995 -117618177 + Lx6 LINE L1 7126 7434 -26 5 634 201 147 0 0 chr9 6458101 6458135 -117618037 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 634 2605 53 3 0 chr9 6458230 6458551 -117617621 + L1_Mus1 LINE L1 6246 6567 0 5 634 893 147 38 0 chr9 6458578 6458735 -117617437 + L1_Mus1 LINE L1 6404 6566 -1 5 634 447 68 0 0 chr9 6458741 6458800 -117617372 + (TAG)n Simple_repeat Simple_repeat 1 59 0 5 634 197 297 15 45 chr9 6459269 6459336 -117616836 - MIR3 SINE MIR -38 170 106 5 634 210 265 0 0 chr9 6459903 6459971 -117616201 + (CACCAT)n Simple_repeat Simple_repeat 4 71 0 5 634 675 306 131 18 chr9 6460160 6460552 -117615620 + RMER20A LTR ERVK 79 514 -2 5 634 368 165 23 0 chr9 6462070 6462158 -117614014 - L1_Mur1 LINE L1 -1202 4675 4595 5 634 37303 34 0 0 chr9 6462176 6467588 -117608584 - L1Md_T LINE L1 0 6582 1170 5 634 4076 154 24 34 chr9 6467594 6468466 -117607706 - L1Md_T LINE L1 -5411 1205 343 5 634 2197 127 3 8 chr9 6468463 6468829 -117607343 - L1_Mur1 LINE L1 -1269 4617 4254 5 634 243 79 0 0 chr9 6468833 6468871 -117607301 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 634 2689 183 65 13 chr9 6468936 6469474 -117606698 + RLTR18 LTR ERVK 6 571 -45 5 634 7670 122 13 50 chr9 6469805 6472123 -117604049 - L1_Mus4 LINE L1 0 6636 4427 5 634 2803 65 8 0 chr9 6472138 6472505 -117603667 - L1_Mus1 LINE L1 0 6567 6198 5 634 7215 68 8 11 chr9 6472759 6473879 -117602293 - L1_Mus2 LINE L1 -1 6565 5447 5 634 7796 45 3 0 chr9 6473874 6475393 -117600779 - L1Md_F2 LINE L1 -2 6580 5058 5 634 1775 148 17 11 chr9 6475393 6475737 -117600435 + RMER17D2 LTR ERVK 526 895 -11 5 634 427 337 194 34 chr9 6476871 6477348 -117598824 + MLT1E LTR MaLR 7 599 -54 5 634 456 281 107 52 chr9 6478517 6478787 -117597385 + MER96B DNA hAT 10 294 -123 5 634 23 0 0 0 chr9 6479566 6479589 -117596583 + AT_rich Low_complexity Low_complexity 1 23 0 5 634 231 36 0 0 chr9 6479736 6479764 -117596408 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 634 724 231 262 40 chr9 6479796 6480098 -117596074 - ORR1D2 LTR MaLR 0 374 6 5 634 525 301 21 59 chr9 6480103 6480290 -117595882 + B4 SINE B4 107 286 -6 5 634 2022 136 28 179 chr9 6480382 6480885 -117595287 - RLTR23 LTR ERV1 -3 427 1 5 634 218 306 14 14 chr9 6481022 6481095 -117595077 + MER5A DNA MER1_type 34 106 -83 6 634 232 143 41 0 chr9 6482736 6482785 -117593387 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 6 634 1158 69 14 0 chr9 6483234 6483379 -117592793 + B1_Mm SINE Alu 1 147 0 6 634 1282 235 78 35 chr9 6483881 6484305 -117591867 - Lx2B LINE L1 -5 6995 6554 6 634 293 261 14 42 chr9 6484329 6484401 -117591771 - B4 SINE B4 -218 74 5 6 634 909 340 31 13 chr9 6484583 6484909 -117591263 - L1MA6 LINE L1 -193 6107 5773 6 634 2702 157 13 32 chr9 6484909 6485022 -117591150 - RLTR28 LTR ERVL 0 524 417 6 634 1130 58 7 0 chr9 6485022 6485160 -117591012 + B1_Mus1 SINE Alu 1 139 -9 6 634 195 42 0 0 chr9 6485160 6485184 -117590988 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 634 2702 157 13 32 chr9 6485184 6485603 -117590569 - RLTR28 LTR ERVL -108 416 2 6 634 909 340 31 13 chr9 6485603 6485830 -117590342 - L1MA6 LINE L1 -528 5772 5544 6 634 1464 108 5 9 chr9 6485833 6486057 -117590115 - L1Md_F2 LINE L1 -12 6570 6348 6 634 608 142 57 0 chr9 6486076 6486182 -117589990 + IAPEY3_LTR LTR ERVK 2 113 -219 6 634 877 166 11 6 chr9 6486182 6486358 -117589814 + IAPLTR4_I LTR ERVK 602 778 -692 6 634 483 96 0 111 chr9 6486333 6486450 -117589722 + MMERVK10C-int LTR ERVK 849 952 -6629 6 634 1416 211 106 32 chr9 6486570 6487087 -117589085 + IAPEY3-int LTR ERVK 255 671 -4735 6 634 405 185 100 8 chr9 6487085 6487205 -117588967 + IAPEY3-int LTR ERVK 1719 1849 -5557 6 634 279 279 0 55 chr9 6487216 6487307 -117588865 + IAPEY3-int LTR ERVK 2454 2539 -4867 6 634 566 210 0 8 chr9 6487319 6487439 -117588733 + IAPEY3-int LTR ERVK 2635 2753 -4653 6 634 1915 133 114 10 chr9 6487465 6488054 -117588118 + IAPEY3-int LTR ERVK 3567 4271 -3135 6 634 445 187 9 36 chr9 6488059 6488170 -117588002 + MMETn-int LTR ERVK 2357 2464 -2380 6 634 728 103 17 8 chr9 6488196 6488313 -117587859 + IAPEY3-int LTR ERVK 4530 4647 -2934 6 634 3126 96 2 16 chr9 6488595 6489048 -117587124 + IAPEY3-int LTR ERVK 5203 5649 -1932 6 634 3069 114 2 0 chr9 6489037 6489486 -117586686 + IAPEY3-int LTR ERVK 5765 6214 -1367 6 634 3823 113 33 0 chr9 6489476 6490053 -117586119 + IAPEY3-int LTR ERVK 6743 7338 -342 6 634 1234 210 56 12 chr9 6490070 6490412 -117585760 + IAPEz-int LTR ERVK 6125 6481 0 6 634 1570 162 75 30 chr9 6490412 6490713 -117585459 + IAPEY3_LTR LTR ERVK 1 465 -10 6 634 28626 89 83 4 chr9 6490722 6496307 -117579865 - L1Md_F2 LINE L1 -232 6350 301 6 634 408 317 18 22 chr9 6496341 6496567 -117579605 - L1M2 LINE L1 -743 5557 5333 6 634 1076 75 7 40 chr9 6496935 6497087 -117579085 - B1_Mus1 SINE Alu 0 148 2 6 634 1015 338 89 2 chr9 6497087 6497514 -117578658 - MTE-int LTR MaLR -228 1352 889 6 634 22 35 0 0 chr9 6497811 6497840 -117578332 + AT_rich Low_complexity Low_complexity 1 29 0 6 634 296 259 118 0 chr9 6498995 6499080 -117577092 - PB1D10 SINE Alu -5 112 18 6 634 3341 31 76 0 chr9 6500633 6501015 -117575157 - IAPLTR2a LTR ERVK 0 411 1 1 634 459 35 0 0 chr9 6502981 6503038 -117573134 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 634 461 259 58 0 chr9 6503749 6503888 -117572284 - LTR80B LTR ERVL -262 322 176 3 634 1188 95 0 0 chr9 6503889 6504037 -117572135 + B1_Mus1 SINE Alu 1 148 0 4 634 1755 147 0 90 chr9 6504825 6505169 -117571003 - ORR1A2 LTR MaLR -14 313 1 5 634 9015 142 161 9 chr9 6505169 6506724 -117569448 - ORR1A2-int LTR MaLR 0 1792 1 5 634 332 111 12 0 chr9 6506724 6506799 -117569373 - ORR1A2 LTR MaLR 0 346 270 5 634 1771 184 66 9 chr9 6506835 6507153 -117569019 + ORR1B2 LTR MaLR 1 336 -31 6 634 1956 198 72 5 chr9 6507165 6507555 -117568617 - MTC LTR MaLR 0 421 6 7 634 28 48 0 0 chr9 6507878 6507920 -117568252 + AT_rich Low_complexity Low_complexity 1 42 0 8 634 510 17 0 0 chr9 6508546 6508605 -117567567 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 634 777 292 7 111 chr9 6508612 6508882 -117567290 + B4 SINE B4 1 242 -50 1 634 420 231 43 87 chr9 6509216 6509401 -117566771 - RNLTR23 LTR ERVK 0 642 466 1 634 31758 93 25 7 chr9 6510571 6515673 -117560499 + L1Md_F2 LINE L1 392 5585 -298 1 634 8204 60 10 12 chr9 6515674 6516672 -117559500 + L1Md_F2 LINE L1 5587 6582 0 1 634 239 333 14 28 chr9 6517889 6518031 -117558141 - L1M2 LINE L1 -4322 2527 2388 1 634 6741 212 71 23 chr9 6519040 6520564 -117555608 + RodERV21-int LTR ERV1 325 1921 -3070 1 634 255 354 68 51 chr9 6520690 6521163 -117555009 + MER52-int LTR ERV1 3586 4066 -3025 1 634 221 0 0 33 chr9 6521423 6521453 -117554719 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 634 6923 204 40 18 chr9 6521689 6523058 -117553114 + RodERV21-int LTR ERV1 3423 4822 -169 1 634 566 194 0 0 chr9 6523064 6523157 -117553015 + RMER4B LTR ERVK 347 439 -146 1 634 685 235 148 49 chr9 6523293 6523557 -117552615 + RMER21B LTR ERV1 273 562 -280 1 634 582 15 0 0 chr9 6523740 6523807 -117552365 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 634 2645 55 0 0 chr9 6524290 6524616 -117551556 + IAPLTR4_I LTR ERVK 32 357 0 2 634 3432 128 11 8 chr9 6524616 6525280 -117550892 + IAPLTR4_I LTR ERVK 22 1057 -413 2 634 250 62 0 0 chr9 6525336 6525368 -117550804 + IAPEY2_LTR LTR ERVK 326 357 0 2 634 1159 211 30 122 chr9 6525368 6525540 -117550632 - RMER17C LTR ERVK -28 382 214 2 634 351 0 0 0 chr9 6525540 6525579 -117550593 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 634 1159 211 30 122 chr9 6525579 6525828 -117550344 - RMER17C LTR ERVK -197 213 2 2 634 6516 137 112 59 chr9 6525828 6526160 -117550012 - RMER17C-int LTR ERVK 0 3238 2900 2 634 522 70 0 0 chr9 6526160 6526231 -117549941 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 634 6516 139 128 45 chr9 6526231 6526531 -117549641 - RMER17C-int LTR ERVK -339 2899 2562 2 634 229 278 0 18 chr9 6526531 6526586 -117549586 + LSU-rRNA_Hsa rRNA rRNA 4199 4252 -783 2 634 6516 139 128 45 chr9 6526586 6527722 -117548450 - RMER17C-int LTR ERVK -339 2561 1276 2 634 1440 253 129 58 chr9 6527742 6528460 -117547712 - RMER17C-int LTR ERVK -2443 795 27 2 634 853 290 112 0 chr9 6528454 6528723 -117547449 + RodERV21-int LTR ERV1 1479 1777 -3214 2 634 958 294 34 48 chr9 6528724 6529078 -117547094 + RodERV21-int LTR ERV1 2370 2718 -2273 2 634 481 348 30 48 chr9 6529197 6529695 -117546477 + RodERV21-int LTR ERV1 3586 4074 -3017 2 634 297 0 0 0 chr9 6530098 6530131 -117546041 + (A)n Simple_repeat Simple_repeat 1 33 0 2 634 312 352 60 31 chr9 6530476 6530931 -117545241 + RodERV21-int LTR ERV1 4664 5052 -3155 2 634 339 235 84 53 chr9 6531173 6531366 -117544806 + RLTR4_MM-int LTR ERV1 4830 4935 -2666 2 634 1806 337 71 60 chr9 6531611 6531779 -117544393 + RodERV21-int LTR ERV1 2726 2888 -2103 2 634 6384 134 13 11 chr9 6531779 6532735 -117543437 + RMER17B LTR ERVK 1 958 0 3 634 1806 337 71 60 chr9 6532735 6534334 -117541838 + RodERV21-int LTR ERV1 2889 4512 -479 2 634 408 306 53 65 chr9 6534395 6534640 -117541532 + RodERV21-int LTR ERV1 4605 4846 -145 2 634 369 284 369 65 chr9 6535233 6535539 -117540633 - RMER21B LTR ERV1 -331 511 113 3 634 207 0 0 0 chr9 6536324 6536347 -117539825 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 634 199 294 41 10 chr9 6536926 6537024 -117539148 + MIR SINE MIR 104 208 -60 3 634 225 65 0 0 chr9 6537032 6537063 -117539109 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 634 192 200 0 0 chr9 6537071 6537111 -117539061 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 3 634 673 246 98 22 chr9 6537343 6537526 -117538646 + B3 SINE B2 4 200 -16 3 634 569 311 94 4 chr9 6537663 6537918 -117538254 - MamRep434 DNA TcMar -11 415 138 3 634 789 213 15 0 chr9 6538175 6538311 -117537861 + B1_Mus2 SINE Alu 3 140 -7 3 634 444 161 0 0 chr9 6538542 6538623 -117537549 + T-rich Low_complexity Low_complexity 1 81 0 3 634 28 0 0 0 chr9 6539507 6539535 -117536637 + AT_rich Low_complexity Low_complexity 1 28 0 4 634 196 301 71 12 chr9 6539742 6539826 -117536346 + L2a LINE L2 3302 3390 -36 4 634 33 56 0 0 chr9 6539942 6539996 -117536176 + AT_rich Low_complexity Low_complexity 1 54 0 4 634 522 0 0 0 chr9 6540951 6541009 -117535163 + (CTTTG)n Simple_repeat Simple_repeat 2 59 0 4 634 182 118 0 29 chr9 6541623 6541658 -117534514 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 634 2017 33 36 32 chr9 6542986 6543238 -117532934 + L1Md_F3 LINE L1 6332 6584 0 4 634 450 94 0 0 chr9 6544020 6544084 -117532088 + (TCC)n Simple_repeat Simple_repeat 1 64 0 4 634 421 177 19 119 chr9 6544105 6544265 -117531907 - Lx6 LINE L1 0 7460 7317 4 634 766 314 40 36 chr9 6544986 6545052 -117531120 - B4 SINE B4 -12 280 216 4 634 570 51 0 0 chr9 6545052 6545130 -117531042 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 634 766 314 40 36 chr9 6545130 6545341 -117530831 - B4 SINE B4 -77 215 2 4 634 399 147 14 68 chr9 6545747 6545820 -117530352 + PB1D9 SINE Alu 28 96 -24 5 634 348 43 0 0 chr9 6545856 6545902 -117530270 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 634 21 36 0 0 chr9 6546078 6546106 -117530066 + AT_rich Low_complexity Low_complexity 1 28 0 5 634 1124 110 0 0 chr9 6546251 6546397 -117529775 + B1_Mus1 SINE Alu 3 148 0 5 634 333 155 0 0 chr9 6546397 6546455 -117529717 + A-rich Low_complexity Low_complexity 2 59 0 5 634 570 230 24 0 chr9 6546737 6546863 -117529309 + ID_B1 SINE B4 9 137 -87 5 634 2202 81 4 13 chr9 6547597 6547899 -117528273 + L1_Mus1 LINE L1 5816 6115 -452 5 634 572 55 0 0 chr9 6547900 6547973 -117528199 + L1_Mus1 LINE L1 6495 6567 0 5 634 618 232 5 92 chr9 6547974 6548159 -117528013 - Lx9 LINE L1 -547 7097 6929 5 634 472 313 54 27 chr9 6548684 6548868 -117527304 - RMER30 DNA MER1_type -6 196 8 5 634 286 354 82 5 chr9 6549661 6549857 -117526315 + L3b LINE CR1 123 333 -149 5 634 1111 284 56 8 chr9 6550767 6551122 -117525050 - Lx8 LINE L1 -84 7389 7018 6 634 641 333 65 67 chr9 6551190 6551592 -117524580 + MTE-int LTR MaLR 761 1161 -419 6 79 4711 150 23 51 chr9 6552749 6553664 -117522508 - RMER17D LTR ERVK 0 889 1 6 635 218 318 0 0 chr9 6554180 6554246 -117521926 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 635 206 227 30 15 chr9 6554317 6554384 -117521788 + GA-rich Low_complexity Low_complexity 1 68 0 6 635 268 260 184 65 chr9 6555438 6555623 -117520549 - MER20 DNA MER1_type -3 216 10 6 635 6061 80 39 4 chr9 6555666 6557255 -117518917 + L1VL2 LINE L1 177 1826 -1789 6 635 314 258 132 22 chr9 6557397 6557488 -117518684 - PB1D10 SINE Alu 0 127 27 6 635 270 0 0 0 chr9 6558504 6558534 -117517638 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 635 336 64 0 0 chr9 6559393 6559440 -117516732 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 6 635 456 19 0 0 chr9 6559450 6559503 -117516669 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 635 775 134 16 16 chr9 6560253 6560382 -117515790 - B1_Mur3 SINE Alu 0 149 21 7 635 301 227 0 134 chr9 6560287 6560399 -117515773 - MT2B LTR ERVL -337 264 168 7 635 441 289 132 13 chr9 6560568 6560719 -117515453 - ID_B1 SINE B4 -50 174 6 7 635 322 348 36 0 chr9 6560726 6560838 -117515334 - MIR SINE MIR -124 138 23 7 635 265 305 0 0 chr9 6561449 6561508 -117514664 - ID4 SINE ID -6 77 19 7 635 1068 230 19 14 chr9 6561567 6561779 -117514393 - B3 SINE B2 -1 215 3 7 635 478 286 27 0 chr9 6561803 6561915 -117514257 + B1F SINE Alu 6 120 -29 7 635 444 19 0 0 chr9 6561921 6561974 -117514198 + (CAT)n Simple_repeat Simple_repeat 2 54 0 7 635 1155 133 148 61 chr9 6563075 6563310 -117512862 + RMER6A LTR ERVK 1 309 -447 7 635 4280 83 30 7 chr9 6563310 6563869 -117512303 - L1_Mus3 LINE L1 -5 6633 6062 8 635 1155 160 45 88 chr9 6563869 6563995 -117512177 + RMER6A LTR ERVK 310 423 -333 7 635 489 17 0 0 chr9 6564455 6564513 -117511659 + (TTA)n Simple_repeat Simple_repeat 3 60 0 8 635 7126 38 5 5 chr9 6564513 6565360 -117510812 - L1Md_F3 LINE L1 -25 6559 5713 8 635 2199 163 78 28 chr9 6565360 6565757 -117510415 + MTC LTR MaLR 5 421 0 8 635 219 36 0 0 chr9 6566009 6566037 -117510135 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 8 635 305 292 92 0 chr9 6566041 6566161 -117510011 - Lx8 LINE L1 -235 7238 7108 8 635 7443 172 43 2 chr9 6566170 6567578 -117508594 + MYSERV16_I-int LTR ERVK 861 2326 0 8 635 1886 223 29 80 chr9 6567578 6568105 -117508067 + RLTR11A LTR ERVK 1 500 -28 8 635 1691 299 64 53 chr9 6568127 6568381 -117507791 - Lx8 LINE L1 -384 7089 6825 8 635 861 75 192 0 chr9 6568381 6568501 -117507671 + B1_Mus1 SINE Alu 1 143 -5 8 635 1691 299 64 53 chr9 6568501 6568998 -117507174 - Lx8 LINE L1 -649 6824 6330 8 635 2559 225 149 87 chr9 6569003 6569801 -117506371 + RMER13A LTR ERVK 1 848 -12 8 635 722 267 32 46 chr9 6569928 6569995 -117506177 - B3 SINE B2 0 216 150 8 635 332 43 0 21 chr9 6569995 6570042 -117506130 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 635 722 267 32 46 chr9 6570042 6570190 -117505982 - B3 SINE B2 -67 149 4 8 635 1222 260 127 55 chr9 6570200 6571045 -117505127 - Lx8 LINE L1 -1284 6189 5274 8 635 260 270 86 30 chr9 6571075 6571246 -117504926 - L1M4 LINE L1 -517 5663 5476 9 635 6507 86 65 5 chr9 6571390 6572400 -117503772 - L1_Mus2 LINE L1 0 6654 5499 9 635 644 262 141 16 chr9 6572476 6572732 -117503440 - L1VL1 LINE L1 -6131 291 4 9 635 332 264 0 0 chr9 6572738 6572829 -117503343 - L1_Mur3 LINE L1 -428 5452 5362 9 635 279 0 0 0 chr9 6572847 6572878 -117503294 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 635 357 274 64 28 chr9 6572896 6573005 -117503167 - MTEa LTR MaLR -62 317 205 9 635 346 252 88 26 chr9 6573025 6573139 -117503033 - MTEa LTR MaLR -248 122 2 9 635 200 125 50 0 chr9 6573282 6573322 -117502850 + (TATG)n Simple_repeat Simple_repeat 1 42 0 9 635 475 81 0 84 chr9 6573485 6573580 -117502592 - L1Md_F2 LINE L1 -1 6581 6495 9 635 517 316 111 39 chr9 6573583 6574224 -117501948 + L1M5 LINE L1 3718 4404 -1742 9 635 305 319 76 43 chr9 6574546 6574915 -117501257 + L1M5 LINE L1 5263 5648 -525 9 635 265 395 26 26 chr9 6575604 6575755 -117500417 - MER20 DNA MER1_type -2 217 67 1 635 7934 77 7 0 chr9 6575802 6577438 -117498734 - L1_Mus1 LINE L1 0 6567 4919 1 635 29 0 0 0 chr9 6577993 6578022 -117498150 + AT_rich Low_complexity Low_complexity 1 29 0 1 635 2021 154 14 6 chr9 6578023 6578370 -117497802 + Lx2 LINE L1 5999 6348 -649 1 635 3506 51 2 0 chr9 6578382 6578777 -117497395 - MTA_Mm LTR MaLR 0 396 1 1 635 323 96 19 0 chr9 6579596 6579648 -117496524 + (TCC)n Simple_repeat Simple_repeat 1 53 0 1 635 315 0 0 0 chr9 6580250 6580285 -117495887 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 635 505 345 35 0 chr9 6580359 6580530 -117495642 + B3A SINE B2 2 178 -20 1 635 304 227 13 0 chr9 6580578 6580653 -117495519 - MIR SINE MIR -74 188 113 1 635 283 363 75 50 chr9 6582352 6582674 -117493498 - ORR1E LTR MaLR -9 350 21 1 635 268 301 41 0 chr9 6582912 6582985 -117493187 + RSINE1 SINE B4 18 93 -72 1 635 3246 57 13 0 chr9 6583109 6583494 -117492678 + RLTR10 LTR ERVK 1 390 0 1 635 3618 52 55 2 chr9 6583504 6584339 -117491833 + RLTR10-int LTR ERVK 41 992 -995 1 635 605 291 39 35 chr9 6584502 6584787 -117491385 + RLTR10-int LTR ERVK 1309 1594 -5987 1 635 8600 32 3 2 chr9 6584869 6585865 -117490307 + RLTR10-int LTR ERVK 990 1986 -1 1 635 3263 57 2 32 chr9 6585865 6586267 -117489905 + RLTR10 LTR ERVK 1 390 0 1 635 479 332 117 15 chr9 6586410 6586752 -117489420 - L1MB1 LINE L1 -189 5979 5603 1 635 401 206 10 0 chr9 6586754 6586856 -117489316 + (CTG)n Simple_repeat Simple_repeat 3 105 0 1 635 233 222 22 0 chr9 6586856 6586901 -117489271 - L1MB1 LINE L1 -577 5594 5549 1 635 641 229 136 74 chr9 6586885 6587231 -117488941 + L1M3 LINE L1 4946 5299 -841 1 635 4433 105 20 83 chr9 6587231 6588033 -117488139 + RMER17A LTR ERVK 1 751 0 1 635 641 229 136 74 chr9 6588033 6588106 -117488066 + L1M3 LINE L1 5300 5391 -749 1 635 263 347 92 8 chr9 6590410 6590529 -117485643 + MER45A DNA Tip100 49 177 -1 1 635 2228 204 78 21 chr9 6591736 6592248 -117483924 + RLTR20A LTR ERVK 1 541 0 1 635 3337 98 14 10 chr9 6592979 6593461 -117482711 + L1_Mm LINE L1 5025 5508 -375 1 635 475 129 0 0 chr9 6593465 6593535 -117482637 - B1_Mus1 SINE Alu -78 70 1 1 635 182 128 0 25 chr9 6594176 6594216 -117481956 + (CACCC)n Simple_repeat Simple_repeat 4 42 0 1 635 725 285 53 48 chr9 6595071 6595428 -117480744 - RLTR10D LTR ERVK 0 359 1 1 635 1287 231 43 40 chr9 6595428 6595780 -117480392 - IAP-d-int LTR ERVK 0 6542 6190 1 635 15047 274 43 25 chr9 6595894 6597305 -117478867 - IAP-d-int LTR ERVK -1361 5181 3772 1 635 1258 61 0 0 chr9 6597305 6597452 -117478720 + B1_Mus1 SINE Alu 2 148 0 1 635 15047 274 43 25 chr9 6597452 6601110 -117475062 - IAP-d-int LTR ERVK -2771 3771 22 1 635 784 258 72 35 chr9 6601157 6601503 -117474669 - RLTR10D LTR ERVK 0 359 1 1 635 26 82 0 0 chr9 6601865 6601926 -117474246 + AT_rich Low_complexity Low_complexity 1 61 0 1 635 541 339 128 49 chr9 6602216 6602803 -117473369 + HAL1 LINE L1 1430 2062 -445 1 635 479 350 72 14 chr9 6602861 6602918 -117473254 - B4A SINE B4 -8 284 218 1 635 1199 95 0 11 chr9 6602918 6603099 -117473073 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 635 479 350 72 14 chr9 6603099 6603264 -117472908 - B4A SINE B4 -75 217 49 1 635 464 373 64 32 chr9 6603455 6603735 -117472437 + B4 SINE B4 1 289 -3 1 635 905 288 64 48 chr9 6604331 6604727 -117471445 + MTE2b LTR MaLR 1 367 -12 1 635 1010 239 36 0 chr9 6605146 6605365 -117470807 - Lx5 LINE L1 -134 6916 6710 1 635 204 40 0 0 chr9 6605365 6605390 -117470782 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 635 27 73 0 0 chr9 6606427 6606482 -117469690 + AT_rich Low_complexity Low_complexity 1 55 0 1 635 813 243 42 37 chr9 6606612 6606826 -117469346 - B3 SINE B2 0 216 2 1 635 348 24 0 0 chr9 6606838 6606879 -117469293 + (TTG)n Simple_repeat Simple_repeat 3 43 0 1 635 859 199 7 7 chr9 6606888 6607035 -117469137 - B1_Mur3 SINE Alu -1 148 2 1 635 358 177 76 0 chr9 6607230 6607309 -117468863 - U5 snRNA snRNA -31 85 1 1 635 231 114 0 0 chr9 6607771 6607806 -117468366 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 635 1641 214 84 6 chr9 6607806 6608164 -117468008 + MTD LTR MaLR 3 388 -31 1 635 243 0 0 0 chr9 6609587 6609614 -117466558 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 635 1269 61 0 0 chr9 6609614 6609794 -117466378 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 635 421 240 0 0 chr9 6610178 6610253 -117465919 + B3A SINE B2 3 77 -121 1 635 236 390 12 0 chr9 6610186 6610268 -117465904 + RSINE1 SINE B4 12 94 -71 1 635 385 309 91 70 chr9 6610734 6611019 -117465153 - B4A SINE B4 0 292 2 1 635 306 312 37 74 chr9 6611660 6611875 -117464297 - MIRb SINE MIR -23 245 39 1 635 1517 211 114 8 chr9 6612320 6612688 -117463484 - MTD LTR MaLR 0 419 13 1 635 484 350 93 41 chr9 6613164 6613507 -117462665 + ORR1D2 LTR MaLR 8 368 -2 1 635 227 333 14 0 chr9 6613789 6613858 -117462314 + C-rich Low_complexity Low_complexity 6 75 0 1 635 300 111 0 0 chr9 6613864 6613909 -117462263 + (TCC)n Simple_repeat Simple_repeat 1 45 0 1 635 1545 186 84 6 chr9 6614663 6615010 -117461162 + ORR1D1 LTR MaLR 1 374 0 1 635 180 261 70 80 chr9 6615700 6615800 -117460372 - L3 LINE CR1 -3560 929 831 1 635 232 123 103 17 chr9 6616021 6616079 -117460093 - MTEb LTR MaLR -22 357 295 1 635 300 317 10 0 chr9 6617053 6617154 -117459018 + MLT1A LTR MaLR 4 105 -269 1 635 576 293 28 22 chr9 6617282 6617460 -117458712 + MLT1A LTR MaLR 189 367 -7 1 635 183 80 0 0 chr9 6617726 6617751 -117458421 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 635 610 325 52 33 chr9 6619957 6620364 -117455808 + RMER1B Other Other 150 828 -514 1 635 585 270 123 11 chr9 6620353 6620540 -117455632 + RMER1C Other Other 1098 1305 -37 1 635 663 215 40 20 chr9 6620572 6620724 -117455448 - MLT1A1 LTR MaLR 0 408 254 1 635 504 248 196 0 chr9 6621073 6621206 -117454966 - RSINE1 SINE B4 -3 162 4 1 635 526 239 35 0 chr9 6621320 6621433 -117454739 + B1_Mur2 SINE Alu 1 117 -32 1 635 359 21 0 20 chr9 6621438 6621487 -117454685 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 635 181 339 31 0 chr9 6622941 6623006 -117453166 + MIRc SINE MIR 58 124 -144 1 635 757 273 15 5 chr9 6623134 6623340 -117452832 + B3 SINE B2 3 210 -6 1 635 244 292 115 0 chr9 6623499 6623629 -117452543 + RSINE1 SINE B4 4 148 -17 1 635 234 0 0 0 chr9 6623639 6623665 -117452507 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 635 606 339 48 91 chr9 6623860 6624387 -117451785 + RLTR17 LTR ERVK 125 553 0 1 635 1674 26 0 0 chr9 6624429 6624620 -117451552 + B2_Mm1t SINE B2 1 191 -2 1 635 24 67 0 0 chr9 6625168 6625213 -117450959 + AT_rich Low_complexity Low_complexity 1 45 0 1 635 215 241 23 0 chr9 6625234 6625321 -117450851 + (CATA)n Simple_repeat Simple_repeat 2 90 0 1 635 220 276 10 39 chr9 6625342 6625444 -117450728 + (CATA)n Simple_repeat Simple_repeat 4 102 0 1 635 181 183 33 0 chr9 6625451 6625511 -117450661 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 1 635 315 0 0 0 chr9 6625571 6625606 -117450566 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 635 511 291 113 23 chr9 6625619 6625928 -117450244 - L1MA7 LINE L1 -91 6200 5864 1 635 1497 217 82 28 chr9 6626511 6626862 -117449310 - MTEa LTR MaLR -10 374 4 1 635 1327 12 12 0 chr9 6627346 6627507 -117448665 + (TTC)n Simple_repeat Simple_repeat 2 164 0 1 635 1001 120 0 0 chr9 6627510 6627652 -117448520 - B1_Mus1 SINE Alu -5 143 2 1 635 31121 99 21 10 chr9 6627695 6629445 -117446727 + L1Md_F LINE L1 196 1966 -3917 1 635 208 0 62 0 chr9 6629445 6629477 -117446695 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 635 31121 65 9 1 chr9 6629477 6633068 -117443104 + L1Md_F LINE L1 1967 5586 -297 1 635 9043 5 0 0 chr9 6633068 6634064 -117442108 + L1Md_T LINE L1 5587 6582 0 1 635 3238 101 36 4 chr9 6634074 6634629 -117441543 + MusHAL1 LINE L1 1380 1952 -760 1 635 4707 102 89 8 chr9 6634640 6635745 -117440427 + L1_Mus2 LINE L1 4860 6101 -465 1 635 2431 27 0 0 chr9 6635745 6636040 -117440132 + ORR1A0 LTR MaLR 1 295 -51 1 635 225 0 0 0 chr9 6636040 6636065 -117440107 + (A)n Simple_repeat Simple_repeat 1 25 0 1 635 8570 82 1 12 chr9 6636065 6636293 -117439879 + L1Md_F2 LINE L1 4360 4587 -1296 1 635 2298 50 10 3 chr9 6636293 6636592 -117439580 - L1Md_F3 LINE L1 -1 6583 6283 1 635 8570 82 1 12 chr9 6636592 6637604 -117438568 + L1Md_F2 LINE L1 4588 5586 -297 1 635 7722 66 0 2 chr9 6637605 6638600 -117437572 + L1Md_F2 LINE L1 5588 6580 -2 1 635 210 156 0 0 chr9 6639519 6639564 -117436608 + CT-rich Low_complexity Low_complexity 2 46 0 1 635 576 292 55 10 chr9 6639567 6639740 -117436432 - B3A SINE B2 -11 205 27 1 635 193 233 23 23 chr9 6640327 6640371 -117435801 - L2b LINE L2 -84 3291 3248 1 635 4329 35 8 2 chr9 6640615 6641133 -117435039 - L1Md_F3 LINE L1 -1 6583 6063 1 635 1230 264 35 21 chr9 6641465 6641837 -117434335 + MTEa LTR MaLR 3 379 0 1 635 199 231 38 19 chr9 6642256 6642309 -117433863 - L2a LINE L2 -6 3420 3367 1 635 498 33 0 0 chr9 6643191 6643251 -117432921 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 635 261 325 132 0 chr9 6643360 6643443 -117432729 + PB1 SINE Alu 3 96 -31 1 635 252 0 0 0 chr9 6643917 6643945 -117432227 + (A)n Simple_repeat Simple_repeat 1 28 0 1 635 1000 237 61 83 chr9 6644615 6645068 -117431104 - RMER2 LTR ERV1 -4 563 22 1 635 22 0 0 0 chr9 6645296 6645318 -117430854 + AT_rich Low_complexity Low_complexity 1 22 0 1 635 697 301 57 9 chr9 6646850 6647061 -117429111 - ID_B1 SINE B4 -3 221 1 1 635 872 105 0 0 chr9 6647420 6647553 -117428619 + L1_Mus1 LINE L1 5255 5387 -496 1 635 20229 23 8 0 chr9 6647549 6650076 -117426096 + L1_Mm LINE L1 1705 4251 -1632 1 635 7096 79 5 0 chr9 6650073 6651381 -117424791 + L1_Mus1 LINE L1 5383 6567 0 1 635 246 62 0 0 chr9 6653229 6653261 -117422911 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 635 508 270 132 53 chr9 6653333 6653503 -117422669 + MTEa LTR MaLR 19 200 -179 1 635 468 0 0 0 chr9 6653503 6653555 -117422617 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 635 508 270 132 53 chr9 6653555 6653611 -117422561 + MTEa LTR MaLR 201 263 -116 1 635 3344 107 42 10 chr9 6653622 6654310 -117421862 - L1VL4 LINE L1 -2501 1058 140 1 635 234 220 0 0 chr9 6654751 6654801 -117421371 + L1MB1 LINE L1 6068 6117 -51 2 635 309 265 39 10 chr9 6654932 6655035 -117421137 + L1M4 LINE L1 4296 4401 -1745 2 635 616 283 145 57 chr9 6655057 6655647 -117420525 + L1M4 LINE L1 4477 5154 -992 2 635 213 39 0 0 chr9 6655647 6655673 -117420499 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 635 616 283 145 57 chr9 6655673 6655835 -117420337 + L1M4 LINE L1 5155 5295 -851 2 635 883 160 0 57 chr9 6656029 6656188 -117419984 + B1_Mur4 SINE Alu 1 150 0 2 635 253 306 0 0 chr9 6656188 6656250 -117419922 + GA-rich Low_complexity Low_complexity 2 63 0 2 635 997 195 71 0 chr9 6656306 6656516 -117419656 + ORR1C1 LTR MaLR 152 376 -2 2 635 1181 253 40 18 chr9 6656523 6656797 -117419375 - MTE2b LTR MaLR -99 280 1 2 635 295 281 141 0 chr9 6657086 6657221 -117418951 + MIR SINE MIR 30 183 -79 2 635 22 0 0 0 chr9 6657238 6657260 -117418912 + AT_rich Low_complexity Low_complexity 1 22 0 2 635 37110 56 3 5 chr9 6657625 6664122 -117412050 - L1Md_T LINE L1 0 6582 100 2 635 220 333 10 59 chr9 6664392 6664404 -117411768 + ID SINE ID 2 38 -186 2 635 244 297 95 0 chr9 6664404 6664478 -117411694 + ID4 SINE ID 1 81 -2 2 635 220 333 10 59 chr9 6664478 6664494 -117411678 + ID_B1 SINE B4 39 98 -126 2 635 332 117 52 0 chr9 6664495 6664572 -117411600 + (ATG)n Simple_repeat Simple_repeat 3 83 0 2 635 3346 46 2 0 chr9 6664573 6664968 -117411204 + MTA_Mm LTR MaLR 1 396 0 2 635 699 287 110 26 chr9 6664974 6665229 -117410943 + MT2A LTR ERVL 245 554 0 2 635 928 140 0 22 chr9 6665494 6665677 -117410495 + CT-rich Low_complexity Low_complexity 2 180 0 2 635 414 0 0 0 chr9 6665684 6665730 -117410442 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 635 325 378 83 35 chr9 6666091 6666379 -117409793 - LTR16E2 LTR ERVL -3 565 264 2 635 200 86 29 0 chr9 6666937 6666972 -117409200 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 2 635 658 234 0 7 chr9 6666973 6667111 -117409061 - B1_Mur4 SINE Alu -1 149 13 2 635 8369 189 61 81 chr9 6669360 6670022 -117406150 - Lx6 LINE L1 -3 7457 6898 2 635 459 0 0 0 chr9 6670022 6670073 -117406099 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 635 8369 191 60 79 chr9 6670073 6671356 -117404816 - Lx6 LINE L1 -563 6897 5552 2 635 686 114 0 0 chr9 6671669 6671786 -117404386 - Lx LINE L1 -203 5680 5564 2 635 29368 73 9 8 chr9 6671780 6676364 -117399808 - L1Md_F2 LINE L1 -1 6581 1991 2 635 540 0 0 0 chr9 6678044 6678104 -117398068 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 635 234 62 0 0 chr9 6678104 6678135 -117398037 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 635 369 0 0 0 chr9 6678612 6678653 -117397519 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2 635 1435 225 264 7 chr9 6678656 6679095 -117397077 - Lx2B LINE L1 -17 6983 6432 2 635 578 298 56 6 chr9 6679212 6679391 -117396781 - B3A SINE B2 -7 191 4 2 635 2381 177 37 5 chr9 6679992 6680400 -117395772 - MTC LTR MaLR 0 421 1 2 635 343 175 16 0 chr9 6680447 6680510 -117395662 - HAL1-3A_ME LINE L1 -819 2039 1976 2 635 234 150 0 0 chr9 6680514 6680554 -117395618 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 635 243 61 0 0 chr9 6680553 6680586 -117395586 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 635 1006 312 47 55 chr9 6680857 6681352 -117394820 - RLTR16 LTR ERVK -12 493 3 2 635 597 295 89 38 chr9 6681352 6681588 -117394584 + MTEb LTR MaLR 106 353 -26 2 635 2358 156 32 8 chr9 6681641 6682015 -117394157 + ORR1C2 LTR MaLR 2 384 0 2 635 39 0 0 0 chr9 6682271 6682310 -117393862 + AT_rich Low_complexity Low_complexity 1 39 0 2 635 728 296 0 25 chr9 6683487 6683650 -117392522 + B3A SINE B2 4 162 -36 2 635 405 0 0 0 chr9 6683653 6683698 -117392474 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 635 504 0 0 0 chr9 6684131 6684187 -117391985 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 635 357 123 0 0 chr9 6684188 6684253 -117391919 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 635 550 291 56 64 chr9 6684295 6684545 -117391627 - MLT2B4 LTR ERVL -224 332 85 2 636 31320 113 49 8 chr9 6684791 6691453 -117384719 - Lx3A LINE L1 -6 6975 23 2 636 226 241 0 36 chr9 6691537 6691593 -117384579 + L1M2 LINE L1 5699 5752 -545 2 636 652 156 8 8 chr9 6692307 6692430 -117383742 - Lx2 LINE L1 0 6997 6875 2 636 8951 123 8 24 chr9 6692456 6694760 -117381412 - L1_Mus3 LINE L1 0 6638 4374 2 636 1990 114 266 29 chr9 6694760 6695203 -117380969 - RLTR6_Mm LTR ERV1 -70 584 37 2 636 264 228 200 38 chr9 6695205 6695310 -117380862 - RLTR6_Mm LTR ERV1 -532 122 1 2 636 62189 34 13 0 chr9 6695310 6702839 -117373333 - RLTR6-int LTR ERV1 0 7778 3 2 636 2037 128 251 28 chr9 6702839 6703305 -117372867 - RLTR6_Mm LTR ERV1 -48 606 37 2 636 289 194 209 0 chr9 6703345 6703412 -117372760 - RLTR6_Mm LTR ERV1 -573 81 1 2 636 17715 139 6 8 chr9 6703412 6706340 -117369832 - L1_Mus3 LINE L1 -1506 4377 1455 2 636 755 97 29 10 chr9 6706341 6706445 -117369727 - U6 snRNA snRNA 0 107 2 2 636 4465 166 99 11 chr9 6707197 6708017 -117368155 + RMER19B LTR ERVK 5 896 -6 2 636 839 173 6 0 chr9 6708136 6708304 -117367868 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2 636 730 275 7 0 chr9 6708315 6708457 -117367715 - RSINE1 SINE B4 -6 159 17 2 636 495 281 120 95 chr9 6708621 6708800 -117367372 + MLT2D LTR ERVL 1 182 -232 2 636 350 333 45 0 chr9 6708800 6708911 -117367261 - PB1D7 SINE Alu -1 119 4 2 636 495 281 120 95 chr9 6708911 6709014 -117367158 + MLT2D LTR ERVL 183 290 -124 2 636 3416 233 68 14 chr9 6709040 6710187 -117365985 - RMER1B Other Other 0 1066 1 2 636 1638 198 77 12 chr9 6710196 6710523 -117365649 - RMER1B Other Other -675 391 44 2 636 240 254 18 0 chr9 6711203 6711258 -117364914 - Charlie9 DNA MER1_type -2695 62 7 2 636 572 214 44 49 chr9 6711333 6711517 -117364655 - RLTR43A LTR ERVK 0 364 201 2 636 1904 243 14 12 chr9 6711684 6712100 -117364072 - ETnERV2-int LTR ERVK -344 7062 6646 2 636 283 338 7 7 chr9 6712102 6712242 -117363930 - ETnERV2-int LTR ERVK -403 7814 7675 2 636 305 353 9 0 chr9 6712360 6712476 -117363696 - ETnERV2-int LTR ERVK -314 6605 6489 2 636 210 71 0 0 chr9 6712788 6712816 -117363356 + (A)n Simple_repeat Simple_repeat 1 28 0 2 636 1023 167 22 11 chr9 6713396 6713578 -117362594 - RMER16-int LTR ERVK -1430 3976 3793 2 636 3449 191 19 3 chr9 6713626 6714262 -117361910 - ETnERV2-int LTR ERVK -1613 5793 5148 2 636 2226 247 36 16 chr9 6714332 6715039 -117361133 - ETnERV2-int LTR ERVK -2872 4534 4084 2 636 2744 183 22 31 chr9 6715061 6715652 -117360520 - RMER16-int LTR ERVK -2567 2839 2303 2 636 1226 243 48 17 chr9 6715647 6715940 -117360232 - ETnERV2-int LTR ERVK -4656 2750 2449 2 636 8320 32 15 0 chr9 6715967 6717290 -117358882 - L1Md_F3 LINE L1 -14 6570 5228 2 636 3859 153 51 44 chr9 6717340 6718060 -117358112 - ETnERV2-int LTR ERVK -4951 2455 1731 2 636 2267 158 130 38 chr9 6718070 6718570 -117357602 - ETnERV2-int LTR ERVK -4587 819 274 2 636 182 62 0 30 chr9 6718607 6718640 -117357532 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 636 1189 95 0 0 chr9 6718643 6718790 -117357382 - B1_Mm SINE Alu 0 147 1 2 636 198 0 0 0 chr9 6719099 6719121 -117357051 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 2 636 501 234 30 78 chr9 6719455 6719622 -117356550 - RLTR43A LTR ERVK 0 364 206 2 636 480 298 8 36 chr9 6719944 6720235 -117355937 + L1M2 LINE L1 5348 5625 -546 2 636 3967 94 16 0 chr9 6720243 6720878 -117355294 - L1VL4 LINE L1 -2523 1036 389 2 636 189 0 0 0 chr9 6720995 6721016 -117355156 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2 636 405 277 209 24 chr9 6721277 6721736 -117354436 + L1MC3 LINE L1 7224 7767 -18 2 636 183 114 0 0 chr9 6722117 6722152 -117354020 + (T)n Simple_repeat Simple_repeat 1 35 0 2 636 2036 194 35 15 chr9 6722234 6722631 -117353541 + MTB_Mm LTR MaLR 3 407 0 2 636 760 280 151 11 chr9 6722949 6723227 -117352945 - RMER21B LTR ERV1 -275 567 251 2 636 412 212 47 0 chr9 6723330 6723414 -117352758 - RMER15 LTR ERVL 0 575 488 2 636 2265 174 124 2 chr9 6723414 6723858 -117352314 + RMER20A LTR ERVK 1 498 -18 2 636 1348 158 36 36 chr9 6723852 6724128 -117352044 - RMER15 LTR ERVL -298 277 2 2 636 515 271 59 18 chr9 6724350 6724519 -117351653 - LTR82B Low_complexity ERVL -379 451 276 2 636 368 314 8 33 chr9 6724931 6725053 -117351119 - MER63B DNA AcHobo 0 436 318 2 636 5297 166 40 127 chr9 6726080 6727233 -117348939 + Lx3A LINE L1 3 1189 -5795 2 636 1054 81 37 0 chr9 6727233 6727369 -117348803 + B1_Mus1 SINE Alu 2 142 -6 2 636 9222 134 34 79 chr9 6727369 6727651 -117348521 + Lx3A LINE L1 1190 1320 -5664 2 636 1277 122 0 0 chr9 6727651 6727839 -117348333 + B2_Mm2 SINE B2 1 188 -7 2 636 9222 93 25 17 chr9 6727839 6729233 -117346939 + Lx3A LINE L1 1321 2732 -3154 2 636 7250 76 2 3 chr9 6729231 6730366 -117345806 + L1_Mus1 LINE L1 5435 6567 0 2 636 10233 100 283 62 chr9 6730367 6733080 -117343092 + Lx3A LINE L1 2714 5998 -983 2 636 198 0 0 0 chr9 6733080 6733102 -117343070 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 636 8205 113 21 25 chr9 6733102 6734049 -117342123 + Lx3A LINE L1 5999 6964 -17 2 636 1152 84 11 11 chr9 6734050 6734230 -117341942 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 636 189 171 0 0 chr9 6734230 6734265 -117341907 + GA-rich Low_complexity Low_complexity 1 35 0 2 636 539 88 0 0 chr9 6734634 6734702 -117341470 - tRNA-Met-i tRNA tRNA -4 71 4 2 636 4086 71 2 13 chr9 6734702 6735244 -117340928 + L1Md_F2 LINE L1 6047 6582 0 2 636 2268 88 0 0 chr9 6735251 6735559 -117340613 - L1Md_F2 LINE L1 -79 5804 5497 2 636 5647 78 0 18 chr9 6735559 6736328 -117339844 + L1Md_F2 LINE L1 5828 6582 0 2 636 2150 145 23 62 chr9 6736463 6736853 -117339319 + RLTR9A2 LTR ERVK 2 376 -7 2 636 1875 79 0 8 chr9 6737950 6738204 -117337968 - RLTR1C LTR ERV1 0 503 252 2 636 2007 137 18 85 chr9 6738173 6738563 -117337609 - RLTR5_Mm LTR ERV1 -264 364 1 2 636 221 170 0 36 chr9 6739375 6739430 -117336742 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 2 636 1177 270 35 77 chr9 6740599 6740976 -117335196 - MTE2a LTR MaLR 0 379 19 2 636 247 272 131 12 chr9 6742129 6742289 -117333883 + L1M5 LINE L1 2686 2864 -3282 2 636 350 282 36 102 chr9 6742355 6742521 -117333651 + B3A SINE B2 44 198 0 2 636 36066 43 1 4 chr9 6742760 6749046 -117327126 - L1Md_T LINE L1 -2 6583 220 2 636 2139 161 12 37 chr9 6749046 6749447 -117326725 - ORR1B1 LTR MaLR -3 391 1 2 636 29 84 0 0 chr9 6749841 6749912 -117326260 + AT_rich Low_complexity Low_complexity 1 71 0 2 636 336 322 81 32 chr9 6750551 6750737 -117325435 - L1MEe LINE L1 -4617 237 43 3 636 27946 119 9 4 chr9 6750784 6756164 -117320008 - L1_Mus2 LINE L1 -4 6562 1190 3 636 4502 32 43 0 chr9 6756164 6756700 -117319472 - L1Md_T LINE L1 0 6582 6024 3 636 2563 208 61 83 chr9 6756700 6757651 -117318521 - L1_Mus2 LINE L1 -5449 1189 234 3 636 32 26 0 0 chr9 6757845 6757884 -117318288 + AT_rich Low_complexity Low_complexity 1 39 0 3 636 32578 76 2 3 chr9 6757890 6764129 -117312043 - L1Md_F2 LINE L1 -2 6580 350 3 636 604 155 0 0 chr9 6764135 6764232 -117311940 - L1Md_F LINE L1 -5958 561 465 3 636 1701 209 206 11 chr9 6764568 6765014 -117311158 - MT2A LTR ERVL 0 533 1 3 636 361 227 0 26 chr9 6765502 6765579 -117310593 - LTR16E1 LTR ERVL -1 537 463 3 636 321 250 129 0 chr9 6765691 6765815 -117310357 - MTEa LTR MaLR -10 369 230 3 636 2206 144 19 6 chr9 6765931 6766294 -117309878 + RLTR9A LTR ERVK 1 368 0 3 636 1079 153 10 16 chr9 6766358 6766550 -117309622 - RMER6C LTR ERVK 0 690 500 3 636 203 212 12 0 chr9 6766571 6766651 -117309521 + (AACTG)n Simple_repeat Simple_repeat 2 82 0 3 636 554 86 402 0 chr9 6766663 6766780 -117309392 - RMER6C LTR ERVK -526 164 1 3 636 357 24 0 0 chr9 6767141 6767183 -117308989 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 636 31313 86 4 7 chr9 6767259 6773299 -117302873 + L1_Mus2 LINE L1 392 6422 -144 3 636 2950 65 8 38 chr9 6773299 6773699 -117302473 + RLTR10 LTR ERVK 1 388 -2 3 636 6690 94 1 12 chr9 6773699 6773851 -117302321 + L1_Mus2 LINE L1 6423 6565 -1 3 636 1347 190 28 21 chr9 6774252 6774537 -117301635 + RLTR24 LTR ERV1 243 529 0 3 636 316 324 70 59 chr9 6774845 6775032 -117301140 + RLTR23 LTR ERV1 242 430 0 3 636 2313 172 64 41 chr9 6775065 6775501 -117300671 - RLTR41 LTR ERV1 0 446 1 3 636 238 244 75 32 chr9 6775979 6776069 -117300103 + ORR1D2 LTR MaLR 242 335 -35 3 636 2507 87 31 3 chr9 6776069 6776425 -117299747 + MT2C_Mm LTR ERVL 1 366 -109 3 636 1491 37 11 5 chr9 6776387 6776578 -117299594 + MTA_Mm LTR MaLR 205 396 0 3 636 304 270 33 22 chr9 6778382 6778473 -117297699 + RLTR23 LTR ERV1 339 430 0 3 636 560 120 0 236 chr9 6778921 6779095 -117297077 + RLTR23 LTR ERV1 10 142 -288 3 636 2508 101 51 5 chr9 6779093 6779502 -117296670 + MTA_Mm-int LTR MaLR 671 1098 0 3 636 3140 63 2 5 chr9 6779502 6779899 -117296273 + MTA_Mm LTR MaLR 1 396 0 3 636 941 112 62 56 chr9 6779910 6780089 -117296083 - RMER19B LTR ERVK -376 526 347 3 636 3096 22 0 44 chr9 6780315 6780699 -117295473 - IAPLTR1_Mm LTR ERVK 0 367 1 3 636 29660 17 1 2 chr9 6780699 6783974 -117292198 - IAPEz-int LTR ERVK 0 6481 3210 3 636 8717 59 79 70 chr9 6783973 6785267 -117290905 - IAPEz-int LTR ERVK -5168 1313 8 3 636 3096 22 0 44 chr9 6785267 6785651 -117290521 - IAPLTR1_Mm LTR ERVK 0 367 1 3 636 266 73 24 0 chr9 6785978 6786019 -117290153 + (TGG)n Simple_repeat Simple_repeat 2 43 0 3 636 2397 155 13 36 chr9 6786053 6786528 -117289644 + RMER16 LTR ERVK 70 533 0 3 636 8272 127 18 1 chr9 6787113 6789187 -117286985 + L1_Mus1 LINE L1 380 2452 -3431 3 636 29761 90 31 2 chr9 6789194 6794265 -117281907 - L1Md_F LINE L1 -389 5494 278 3 636 19567 99 5 1 chr9 6794260 6797752 -117278420 + L1_Mus1 LINE L1 3062 6567 0 3 636 960 283 97 20 chr9 6798562 6798912 -117277260 + MTE2a LTR MaLR 3 379 0 3 636 2101 176 82 34 chr9 6799386 6799921 -117276251 - RLTR31_Mm LTR ERVK 0 561 1 3 636 306 278 123 31 chr9 6800354 6800517 -117275655 + MER3 DNA MER1_type 12 189 -20 3 636 620 161 0 0 chr9 6800944 6801037 -117275135 + 4.5SRNA scRNA scRNA 1 93 -1 3 636 267 339 43 9 chr9 6801664 6801780 -117274392 - L2a LINE L2 -5 3421 3302 3 636 636 50 0 0 chr9 6802429 6802509 -117273663 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 636 506 91 0 13 chr9 6802509 6802587 -117273585 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 3 636 1620 0 0 0 chr9 6802590 6802770 -117273402 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 636 806 30 10 0 chr9 6802770 6802871 -117273301 + (GAGAA)n Simple_repeat Simple_repeat 1 102 0 3 636 469 230 16 8 chr9 6802884 6803011 -117273161 - L1MA6 LINE L1 -11 6289 6162 3 636 783 101 0 0 chr9 6803046 6803165 -117273007 + (TTTTG)n Simple_repeat Simple_repeat 2 120 0 3 636 3983 208 29 8 chr9 6803584 6804353 -117271819 - Lx5 LINE L1 -1 7049 6265 3 636 2226 121 62 3 chr9 6804354 6804727 -117271445 + BGLII_A LTR ERVK 51 445 0 3 636 1757 125 266 59 chr9 6804873 6805331 -117270841 + RLTR6_Mm LTR ERV1 37 589 -65 3 636 65571 35 18 0 chr9 6805331 6812989 -117263183 + RLTR6-int LTR ERV1 1 7778 0 3 636 227 148 246 0 chr9 6812989 6813050 -117263122 + RLTR6_Mm LTR ERV1 1 76 -578 3 636 1753 122 272 49 chr9 6813095 6813543 -117262629 + RLTR6_Mm LTR ERV1 37 584 -70 3 636 2756 193 63 19 chr9 6813549 6814444 -117261728 - Lx5 LINE L1 -832 6218 5296 3 636 677 152 8 17 chr9 6814501 6814621 -117261551 - B1_Mus1 SINE Alu -24 124 6 3 636 1085 292 99 22 chr9 6814687 6815142 -117261030 + RLTR17 LTR ERVK 121 610 -82 3 636 2661 39 9 24 chr9 6815180 6815521 -117260651 - L1Md_F2 LINE L1 0 6582 6247 3 637 550 269 14 14 chr9 6815788 6815935 -117260237 - B1_Mus1 SINE Alu 0 148 2 3 637 232 128 45 23 chr9 6815938 6816026 -117260146 + T-rich Low_complexity Low_complexity 2 91 0 3 637 21 0 0 0 chr9 6816026 6816047 -117260125 + AT_rich Low_complexity Low_complexity 1 21 0 3 637 384 77 0 0 chr9 6816608 6816660 -117259512 + (T)n Simple_repeat Simple_repeat 1 52 0 3 637 201 121 0 0 chr9 6817526 6817559 -117258613 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 3 637 17867 139 25 34 chr9 6817563 6817914 -117258258 + L1_Mus3 LINE L1 2716 3051 -2832 3 637 1278 27 0 0 chr9 6817914 6818061 -117258111 + B1_Mm SINE Alu 1 147 0 3 637 17867 139 25 34 chr9 6818061 6819762 -117256410 + L1_Mus3 LINE L1 3052 4740 -1143 3 637 1686 36 0 0 chr9 6819762 6819955 -117256217 + B2_Mm1a SINE B2 1 193 0 3 637 17867 122 39 28 chr9 6819955 6821833 -117254339 + L1_Mus3 LINE L1 4741 6633 -5 3 637 779 319 78 25 chr9 6821867 6821908 -117254264 - MT2A LTR ERVL 0 533 493 3 637 297 0 0 0 chr9 6821908 6821941 -117254231 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 637 779 319 78 25 chr9 6821941 6822256 -117253916 - MT2A LTR ERVL -41 492 159 3 637 416 346 129 9 chr9 6822782 6823100 -117253072 - ORR1E LTR MaLR 0 359 4 3 637 22 0 0 0 chr9 6823287 6823309 -117252863 + AT_rich Low_complexity Low_complexity 1 22 0 3 637 2439 102 14 36 chr9 6823992 6824289 -117251883 + RLTR9E LTR ERVK 1 297 -112 3 637 3473 30 2 0 chr9 6824289 6824684 -117251488 + MTA_Mm LTR MaLR 1 396 0 3 637 2439 102 14 36 chr9 6824684 6824804 -117251368 + RLTR9E LTR ERVK 298 409 0 3 637 1198 74 0 0 chr9 6825056 6825204 -117250968 + B1_Mus1 SINE Alu 1 148 0 3 637 479 178 16 8 chr9 6825517 6825633 -117250539 + ORR1D1 LTR MaLR 241 360 -14 3 637 207 0 0 0 chr9 6826351 6826374 -117249798 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 3 637 486 75 0 0 chr9 6827000 6827067 -117249105 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 637 347 232 0 0 chr9 6827068 6827137 -117249035 - ID4_ SINE ID -13 70 2 3 637 222 240 0 0 chr9 6827650 6827700 -117248472 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 637 992 153 121 0 chr9 6828298 6828488 -117247684 - RMER17B LTR ERVK -745 213 1 3 637 3753 86 34 0 chr9 6828488 6828991 -117247181 - L1_Mur1 LINE L1 -2 5884 5365 3 637 256 307 30 52 chr9 6829273 6829291 -117246881 + ID SINE ID 66 80 -144 3 637 443 254 49 33 chr9 6829291 6829413 -117246759 + B1_Mur3 SINE Alu 1 124 -25 3 637 26 0 0 0 chr9 6829418 6829444 -117246728 + AT_rich Low_complexity Low_complexity 1 26 0 3 637 5046 110 42 13 chr9 6831214 6832069 -117244103 + RMER17A2 LTR ERVK 1 880 -26 3 637 1169 220 132 3 chr9 6832260 6832548 -117243624 - L1VL4 LINE L1 -5632 670 346 3 637 1333 81 0 54 chr9 6832593 6832775 -117243397 - MTB LTR MaLR -191 209 33 3 637 2927 110 20 10 chr9 6832775 6833180 -117242992 - RLTR9E LTR ERVK 0 409 1 3 637 1417 81 0 54 chr9 6833180 6833218 -117242954 - MTB LTR MaLR -368 32 1 3 637 1149 127 29 0 chr9 6833950 6834123 -117242049 - L1VL4 LINE L1 -5886 416 239 3 637 1824 139 24 37 chr9 6834480 6834785 -117241387 + RLTR9D LTR ERVK 1 303 -100 3 637 2019 116 102 102 chr9 6834785 6834869 -117241303 - RLTR9C LTR ERVK 0 393 295 3 637 486 0 0 0 chr9 6834869 6834923 -117241249 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 637 2019 116 102 102 chr9 6834923 6835231 -117240941 - RLTR9C LTR ERVK -99 294 1 3 637 1824 186 101 37 chr9 6835231 6835304 -117240868 + RLTR9D LTR ERVK 304 416 -4 3 637 1027 56 0 0 chr9 6835251 6835377 -117240795 - B1_Mm SINE Alu -21 126 1 3 637 546 158 10 31 chr9 6835377 6835474 -117240698 + RLTR9D LTR ERVK 309 403 0 3 637 2191 164 26 3 chr9 6835777 6836156 -117240016 + L1VL4 LINE L1 229 616 -5686 3 637 288 257 43 0 chr9 6836156 6836226 -117239946 - ID2 SINE ID -9 74 2 3 637 3505 188 142 90 chr9 6836766 6837503 -117238669 - RMER19B LTR ERVK 0 902 78 3 637 1510 78 11 0 chr9 6837503 6837694 -117238478 + B2_Mm1t SINE B2 1 193 0 3 637 3505 188 142 90 chr9 6837694 6837813 -117238359 - RMER19B LTR ERVK -825 77 1 3 637 6929 110 26 4 chr9 6838207 6838306 -117237866 - L1_Mus3 LINE L1 -5 6633 6532 3 637 2838 64 0 55 chr9 6838306 6838672 -117237500 - ORR1A1 LTR MaLR 0 346 1 3 637 6929 114 26 4 chr9 6838672 6839687 -117236485 - L1_Mus3 LINE L1 -107 6531 5496 3 637 2142 146 158 8 chr9 6839687 6840067 -117236105 + RLTR9B LTR ERVK 1 437 0 3 637 312 323 73 42 chr9 6840069 6840382 -117235790 + ETnERV-int LTR ERVK 4 326 -2988 3 637 453 19 0 0 chr9 6840392 6840446 -117235726 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 637 2189 87 0 0 chr9 6840449 6840769 -117235403 - L1_Mus2 LINE L1 -11 5872 5553 3 637 8656 114 39 15 chr9 6840796 6842874 -117233298 - L1VL1 LINE L1 -1318 2380 248 3 637 2879 241 33 29 chr9 6842878 6843614 -117232558 - L1VL4 LINE L1 -5418 884 146 3 637 3624 140 116 35 chr9 6843769 6844357 -117231815 - RMER17D2 LTR ERVK 0 809 156 3 637 347 0 23 0 chr9 6844357 6844400 -117231772 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 637 3624 140 116 35 chr9 6844400 6844559 -117231613 - RMER17D2 LTR ERVK -654 155 1 3 637 4270 192 142 23 chr9 6844880 6845867 -117230305 + RLTR13D3 LTR ERVK 1 1104 -10 3 637 247 132 42 42 chr9 6846247 6846318 -117229854 + A-rich Low_complexity Low_complexity 3 73 0 3 637 2645 51 16 4 chr9 6846331 6846690 -117229482 + ORR1A0 LTR MaLR 9 378 0 3 637 704 61 0 0 chr9 6846690 6846789 -117229383 + MTA_Mm-int LTR MaLR 1000 1098 0 3 637 2318 70 3 118 chr9 6846789 6846910 -117229262 + MTA_Mm LTR MaLR 1 107 -289 3 637 1065 130 0 0 chr9 6846910 6847056 -117229116 - B1_Mus2 SINE Alu -1 146 1 3 637 2318 70 3 118 chr9 6847056 6847323 -117228849 + MTA_Mm LTR MaLR 108 344 -52 3 637 237 33 0 0 chr9 6847568 6847598 -117228574 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 637 1133 116 0 17 chr9 6848020 6848195 -117227977 + B2_Mm2 SINE B2 2 173 -22 3 637 207 0 0 0 chr9 6848279 6848302 -117227870 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 637 207 0 0 0 chr9 6849077 6849100 -117227072 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 637 186 133 0 0 chr9 6849295 6849325 -117226847 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 637 256 274 14 0 chr9 6849817 6849890 -117226282 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 4 637 2526 125 9 3 chr9 6849974 6850318 -117225854 + ORR1A1 LTR MaLR 1 346 0 4 637 11635 132 64 19 chr9 6850318 6852196 -117223976 + ORR1A1-int LTR MaLR 1 1963 0 4 637 2234 119 35 0 chr9 6852196 6852508 -117223664 + ORR1A1 LTR MaLR 1 323 -4 4 637 262 222 39 29 chr9 6852724 6852826 -117223346 - MER113A DNA MER1_type -142 172 70 4 637 1175 89 0 7 chr9 6852832 6852979 -117223193 + B1_Mm SINE Alu 2 147 0 4 637 963 242 14 9 chr9 6853550 6853763 -117222409 - RMER15 LTR ERVL -38 537 324 4 637 1050 309 42 48 chr9 6854173 6854527 -117221645 + ORR1E LTR MaLR 8 359 0 4 637 533 15 0 15 chr9 6854859 6854926 -117221246 + (TAA)n Simple_repeat Simple_repeat 3 68 0 4 637 387 0 0 0 chr9 6854926 6854969 -117221203 + (CATA)n Simple_repeat Simple_repeat 1 43 0 4 637 513 240 227 0 chr9 6855209 6855363 -117220809 + B3A SINE B2 3 191 -7 4 637 2907 257 19 18 chr9 6856584 6857264 -117218908 - Lx6 LINE L1 0 7460 6780 4 637 1722 206 14 47 chr9 6857270 6857694 -117218478 - RMER17C LTR ERVK 0 410 1 4 637 25105 139 102 31 chr9 6857748 6860287 -117215885 + L1_Mus2 LINE L1 397 3443 -2440 4 637 738 0 0 0 chr9 6860287 6860369 -117215803 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 4 637 25105 113 126 12 chr9 6860369 6860892 -117215280 + L1_Mus2 LINE L1 3444 3935 -1948 4 637 1434 61 6 6 chr9 6860892 6861051 -117215121 + B2_Mm1a SINE B2 2 160 -33 4 637 387 0 0 0 chr9 6861051 6861094 -117215078 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 4 637 1434 61 6 6 chr9 6861094 6861116 -117215056 + B2_Mm1a SINE B2 161 182 -11 4 637 25105 95 80 8 chr9 6861116 6863735 -117212437 + L1_Mus2 LINE L1 3936 6565 -1 4 637 2017 150 221 16 chr9 6863740 6864302 -117211870 - RMER17C-int LTR ERVK -29 3209 2533 4 637 987 142 199 28 chr9 6864301 6864813 -117211359 - RMER17C-int LTR ERVK -897 2341 1568 4 637 386 193 71 24 chr9 6865201 6865286 -117210886 - RMER17C-int LTR ERVK -2771 467 379 4 637 982 186 44 136 chr9 6865751 6866112 -117210060 - RMER16 LTR ERVK -35 498 171 4 637 1128 192 120 27 chr9 6866506 6866805 -117209367 - RMER17C-int LTR ERVK -2910 328 2 4 637 1461 159 48 94 chr9 6866806 6867253 -117208919 - RMER17C LTR ERVK -519 439 16 4 637 2128 216 35 0 chr9 6867287 6867784 -117208388 - Lx6 LINE L1 -700 6760 6202 4 637 9291 124 46 23 chr9 6867775 6869882 -117206290 - L1_Mus2 LINE L1 -51 6515 4367 4 637 1158 117 0 0 chr9 6870662 6870841 -117205331 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 4 637 9350 111 11 29 chr9 6870857 6871165 -117205007 - Lx2 LINE L1 -1 6996 6688 4 637 465 34 0 0 chr9 6871165 6871224 -117204948 + (TGG)n Simple_repeat Simple_repeat 2 60 0 4 637 9350 139 13 26 chr9 6871224 6873389 -117202783 - Lx2 LINE L1 -310 6687 4559 4 637 211 304 87 0 chr9 6873412 6873481 -117202691 + B3 SINE B2 3 77 -139 4 637 482 285 74 27 chr9 6873419 6873567 -117202605 + RSINE1 SINE B4 11 165 0 4 637 488 186 19 102 chr9 6873687 6873795 -117202377 - RMER30 DNA MER1_type -5 197 99 4 637 216 97 0 0 chr9 6873796 6873827 -117202345 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 637 351 0 0 0 chr9 6873839 6873878 -117202294 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 4 637 189 121 0 0 chr9 6873881 6873914 -117202258 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 637 271 317 12 0 chr9 6873914 6873996 -117202176 - RMER30 DNA MER1_type -118 84 2 4 637 357 24 0 0 chr9 6874142 6874184 -117201988 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 4 637 7523 81 1 0 chr9 6874210 6875236 -117200936 - L1Md_F2 LINE L1 -3477 2406 1380 4 637 23528 77 5 22 chr9 6875232 6875802 -117200370 + L1Md_F2 LINE L1 2401 2962 -2921 4 637 1266 55 0 0 chr9 6875802 6875948 -117200224 - B1_Mm SINE Alu 0 147 2 4 637 23528 77 5 22 chr9 6875948 6878618 -117197554 + L1Md_F2 LINE L1 2963 5586 -297 4 637 8075 67 9 5 chr9 6878619 6879610 -117196562 + L1Md_F2 LINE L1 5588 6582 0 4 637 1130 77 0 0 chr9 6879619 6879762 -117196410 + L1_Mus1 LINE L1 5971 6113 -454 4 637 241 330 26 26 chr9 6880039 6880154 -117196018 - MIR SINE MIR -81 181 67 4 637 232 305 96 12 chr9 6881847 6881930 -117194242 + MLT1E1 LTR MaLR 86 175 -337 4 637 7025 131 34 0 chr9 6882087 6882768 -117193404 + L1_Mus3 LINE L1 217 898 -5740 4 637 1236 70 0 0 chr9 6882768 6882911 -117193261 - B1_Mm SINE Alu -3 144 2 4 637 29050 124 11 30 chr9 6882911 6886163 -117190009 + L1_Mus3 LINE L1 899 4196 -1687 4 637 195 42 0 0 chr9 6886163 6886187 -117189985 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 637 29050 123 9 33 chr9 6886187 6886799 -117189373 + L1_Mus3 LINE L1 4197 4821 -1062 4 637 3329 34 0 0 chr9 6886799 6887156 -117189016 - IAPEY2_LTR LTR ERVK 0 357 1 4 637 29050 112 10 17 chr9 6887156 6889099 -117187073 + L1_Mus3 LINE L1 4822 6637 -1 4 637 228 35 0 0 chr9 6889204 6889233 -117186939 + (T)n Simple_repeat Simple_repeat 1 29 0 4 637 463 78 0 0 chr9 6889233 6889297 -117186875 - B1_Mm SINE Alu 0 147 84 4 637 318 342 37 56 chr9 6889359 6889509 -117186663 - RLTR14 LTR ERV1 0 382 235 4 637 444 51 0 0 chr9 6889509 6889568 -117186604 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 4 637 237 196 0 0 chr9 6889762 6889813 -117186359 - L1M5 LINE L1 -2274 3872 3822 4 637 36 23 0 0 chr9 6889830 6889873 -117186299 + AT_rich Low_complexity Low_complexity 1 43 0 4 637 330 315 141 8 chr9 6889891 6890019 -117186153 - RSINE1 SINE B4 -18 147 3 4 637 263 326 103 52 chr9 6890163 6890332 -117185840 + MLT1E1 LTR MaLR 261 440 -187 4 637 289 396 17 29 chr9 6890383 6890557 -117185615 + MLT1E1 LTR MaLR 480 651 -3 4 637 516 230 0 58 chr9 6890576 6890696 -117185476 - B1_Mus2 SINE Alu -18 129 17 4 637 346 225 35 97 chr9 6890610 6890723 -117185449 - MT2B LTR ERVL -344 257 152 4 637 320 286 118 12 chr9 6890751 6890921 -117185251 - L1M4 LINE L1 -2456 3690 3503 4 637 338 279 66 18 chr9 6891110 6891358 -117184814 - L1M4 LINE L1 -2700 3446 3180 4 637 835 108 69 58 chr9 6891358 6891534 -117184638 - B2_Mm2 SINE B2 0 195 5 4 637 432 335 22 82 chr9 6891696 6891966 -117184206 - MER102a DNA MER1_type -1 329 76 4 637 1309 297 40 3 chr9 6892489 6892840 -117183332 + MTEa LTR MaLR 7 370 -9 4 637 214 73 49 0 chr9 6893501 6893542 -117182630 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 4 637 3377 40 2 0 chr9 6893789 6894184 -117181988 + MTA_Mm LTR MaLR 1 396 0 4 637 210 37 0 0 chr9 6894709 6894736 -117181436 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 637 1104 82 0 7 chr9 6894748 6894895 -117181277 - B1_Mus2 SINE Alu 0 147 2 4 637 564 284 6 88 chr9 6894904 6895074 -117181098 + B3A SINE B2 43 198 0 4 637 2893 45 0 8 chr9 6895135 6895495 -117180677 + L1Md_F2 LINE L1 6226 6582 0 4 637 5308 49 9 1 chr9 6896084 6896741 -117179431 - L1Md_F2 LINE L1 0 6582 5921 4 637 1025 270 59 83 chr9 6897291 6897666 -117178506 - MTE2b LTR MaLR -13 366 1 4 637 1986 121 111 17 chr9 6897712 6898056 -117178116 + RLTR14 LTR ERV1 1 376 -6 4 637 583 310 52 47 chr9 6898691 6898767 -117177405 + RMER30 DNA MER1_type 8 82 -120 4 637 189 0 0 0 chr9 6898767 6898788 -117177384 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 637 583 310 52 47 chr9 6898788 6898904 -117177268 + RMER30 DNA MER1_type 83 201 -1 4 637 286 318 124 0 chr9 6901921 6902050 -117174122 - B1F SINE Alu -4 145 1 4 637 374 333 0 0 chr9 6902163 6902259 -117173913 + PB1D10 SINE Alu 21 116 -1 4 637 25886 75 1 5 chr9 6902262 6906673 -117169499 + L1Md_F LINE L1 465 4857 -1026 4 637 342 260 186 16 chr9 6906784 6906913 -117169259 - ETnERV2-int LTR ERVK -760 6646 6496 4 637 289 259 0 0 chr9 6907260 6907341 -117168831 - RLTR45-int LTR ERVK -1329 6888 6808 4 637 3000 62 32 0 chr9 6907465 6907865 -117168307 - RLTR13D5 LTR ERVK -320 703 291 4 637 6333 143 75 83 chr9 6907903 6909402 -117166770 - RLTR45-int LTR ERVK -1173 6071 4585 4 637 5904 134 31 4 chr9 6909372 6910383 -117165789 - RLTR45-int LTR ERVK -3314 4092 3055 4 637 756 213 0 37 chr9 6910383 6910544 -117165628 - RLTR45-int LTR ERVK -4798 2608 2454 4 637 592 160 25 8 chr9 6910557 6910677 -117165495 - RMER16-int LTR ERVK -4196 1210 1089 4 637 295 85 0 0 chr9 6910801 6910848 -117165324 - RMER16-int LTR ERVK -5218 188 142 4 637 218 32 0 31 chr9 6911183 6911215 -117164957 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 4 637 1023 98 6 58 chr9 6911317 6911491 -117164681 - LTRIS2 LTR ERV1 0 564 400 4 637 13747 106 9 10 chr9 6912467 6914105 -117162067 + L1_Mus2 LINE L1 3725 5369 -514 4 637 2821 74 7 30 chr9 6914105 6914510 -117161662 - MTA_Mm LTR MaLR 0 396 1 4 637 13747 106 9 10 chr9 6914510 6914555 -117161617 + L1_Mus2 LINE L1 5370 5413 -470 4 637 5787 137 12 22 chr9 6914555 6915548 -117160624 + RLTR13C1 LTR ERVK 1 983 0 4 637 13747 73 8 2 chr9 6915548 6916700 -117159472 + L1_Mus2 LINE L1 5414 6566 0 4 637 255 61 0 0 chr9 6916744 6916777 -117159395 + (GGA)n Simple_repeat Simple_repeat 3 35 0 4 637 1266 90 0 0 chr9 6916778 6916956 -117159216 + (GAA)n Simple_repeat Simple_repeat 1 178 0 4 637 1487 17 0 16 chr9 6916958 6917141 -117159031 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 637 387 0 0 0 chr9 6917374 6917417 -117158755 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 637 357 24 0 0 chr9 6918447 6918489 -117157683 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 637 2319 54 0 17 chr9 6919223 6919523 -117156649 - ORR1A1 LTR MaLR -51 295 1 4 637 12757 70 11 17 chr9 6919523 6920202 -117155970 - ORR1A1-int LTR MaLR 0 1792 1124 4 637 4679 65 5 2 chr9 6920202 6920787 -117155385 + LTRIS_Mus LTR ERV1 1 587 0 4 637 12757 70 11 17 chr9 6920787 6921173 -117154999 - ORR1A1-int LTR MaLR -669 1123 735 4 637 4803 65 18 20 chr9 6921173 6921829 -117154343 + L1_Mus1 LINE L1 5911 6565 -2 4 637 12757 70 11 17 chr9 6921829 6921844 -117154328 - ORR1A1-int LTR MaLR -1058 734 734 4 637 209 57 0 28 chr9 6921844 6921880 -117154292 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 4 637 12757 70 11 17 chr9 6921880 6922601 -117153571 - ORR1A1-int LTR MaLR -1058 734 1 4 637 1674 10 0 24 chr9 6922605 6922811 -117153361 - ORR1A1 LTR MaLR -8 338 138 4 637 258 81 0 0 chr9 6923462 6923499 -117152673 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 637 24 67 0 0 chr9 6923607 6923652 -117152520 + AT_rich Low_complexity Low_complexity 1 45 0 4 637 22 70 0 0 chr9 6923718 6923761 -117152411 + AT_rich Low_complexity Low_complexity 1 43 0 4 637 3034 212 47 31 chr9 6923856 6924605 -117151567 + RodERV21-int LTR ERV1 1951 2711 -2280 4 637 260 183 35 35 chr9 6924777 6924862 -117151310 + RLTR19-int LTR ERVK 801 885 -5252 4 637 460 124 22 33 chr9 6924982 6925074 -117151098 + RLTR19-int LTR ERVK 1090 1180 -4957 4 637 970 108 92 49 chr9 6925085 6925270 -117150902 - B2_Mm1a SINE B2 0 193 1 4 637 180 0 0 0 chr9 6925463 6925483 -117150689 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 637 4364 97 88 1 chr9 6925486 6926148 -117150024 - Lx3_Mus LINE L1 -11 6998 6280 4 637 198 0 0 0 chr9 6926149 6926171 -117150001 + (T)n Simple_repeat Simple_repeat 1 22 0 4 637 1266 27 0 0 chr9 6926171 6926318 -117149854 - B1_Mm SINE Alu 0 147 1 4 637 1449 54 0 5 chr9 6926321 6926508 -117149664 - L1_Mus1 LINE L1 -135 6432 6247 4 637 1740 87 54 0 chr9 6926507 6926784 -117149388 - L1_Mur1 LINE L1 -514 5372 5081 4 637 3140 83 5 0 chr9 6926784 6927232 -117148940 + L1_Mur1 LINE L1 4683 5132 -754 4 637 345 167 0 0 chr9 6927636 6927696 -117148476 + RodERV21-int LTR ERV1 4759 4818 -173 4 637 408 272 58 0 chr9 6927704 6927807 -117148365 + RMER4B LTR ERVK 345 453 -132 4 637 492 210 142 34 chr9 6927959 6928107 -117148065 + RMER21B LTR ERV1 348 511 -331 4 637 277 329 0 13 chr9 6928608 6928716 -117147456 + ID4_ SINE ID 6 109 -43 5 637 381 267 81 88 chr9 6929797 6929945 -117146227 + B4A SINE B4 24 170 -122 5 637 420 104 0 0 chr9 6930097 6930164 -117146008 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 637 23 54 0 0 chr9 6930774 6930811 -117145361 + AT_rich Low_complexity Low_complexity 1 37 0 5 637 11777 151 13 13 chr9 6931293 6934305 -117141867 - Lx LINE L1 -6 6648 3635 5 637 2683 108 0 2 chr9 6934321 6934748 -117141424 - MusHAL1 LINE L1 -940 1772 1347 5 637 451 138 23 0 chr9 6934925 6935012 -117141160 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 637 189 0 0 0 chr9 6935014 6935035 -117141137 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 637 202 250 48 32 chr9 6935717 6935779 -117140393 + MIRb SINE MIR 128 190 -78 5 637 6002 60 8 14 chr9 6935829 6936626 -117139546 + L1_Mus1 LINE L1 5775 6566 -1 5 637 251 242 15 0 chr9 6937032 6937098 -117139074 - RLTR42-int LTR ERVK -3658 1864 1798 5 637 3058 87 74 19 chr9 6938082 6938553 -117137619 + Lx LINE L1 6158 6654 0 5 637 561 30 0 0 chr9 6938571 6938638 -117137534 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 637 211 191 20 60 chr9 6938638 6938688 -117137484 + ID4_ SINE ID 34 81 -2 5 637 237 122 76 63 chr9 6938728 6938807 -117137365 + L1M4b LINE L1 2989 3068 -4266 5 637 207 0 0 0 chr9 6939323 6939346 -117136826 + (CATA)n Simple_repeat Simple_repeat 1 23 0 5 637 383 162 0 12 chr9 6939346 6939427 -117136745 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 637 258 296 45 18 chr9 6939576 6939686 -117136486 + MLT1H LTR MaLR 40 152 -397 5 637 1961 140 75 90 chr9 6939822 6940222 -117135950 + ORR1B1 LTR MaLR 1 394 0 5 637 219 381 60 26 chr9 6940884 6941035 -117135137 + L2b LINE L2 3219 3374 -1 5 637 249 320 159 8 chr9 6941237 6941363 -117134809 + MER3 DNA MER1_type 64 208 -1 5 637 220 290 0 92 chr9 6942451 6942527 -117133645 - L4 LINE RTE -861 1168 1100 5 637 3843 53 6 2 chr9 6942734 6943222 -117132950 + L1_Mus1 LINE L1 6078 6567 0 5 637 22 94 0 0 chr9 6943451 6943515 -117132657 + AT_rich Low_complexity Low_complexity 1 64 0 5 637 305 160 0 0 chr9 6945351 6945416 -117130756 + L1_Mur3 LINE L1 4949 5021 -865 5 79 34080 70 2 15 chr9 6945429 6951775 -117124397 - L1Md_F2 LINE L1 0 6582 324 5 638 1678 225 191 12 chr9 6951783 6952475 -117123697 + L1_Mur3 LINE L1 5055 5870 -10 5 638 1824 317 68 45 chr9 6952482 6953514 -117122658 + Lx8 LINE L1 5830 6884 -589 5 638 184 274 79 16 chr9 6953993 6954056 -117122116 + L2b LINE L2 3304 3370 -5 5 638 217 241 0 0 chr9 6954481 6954539 -117121633 + A-rich Low_complexity Low_complexity 1 58 0 5 638 22 0 0 0 chr9 6956168 6956190 -117119982 + AT_rich Low_complexity Low_complexity 1 22 0 5 638 455 255 190 65 chr9 6956687 6956968 -117119204 + L1M2 LINE L1 3087 3410 -2733 5 638 315 263 199 22 chr9 6956968 6957104 -117119068 + RSINE1 SINE B4 2 161 -4 5 638 455 255 190 65 chr9 6957104 6957174 -117118998 + L1M2 LINE L1 3411 3482 -2661 5 638 495 178 0 0 chr9 6957200 6957301 -117118871 + (ATGGTG)n Simple_repeat Simple_repeat 4 104 0 5 638 1728 143 76 36 chr9 6958254 6958586 -117117586 - RMER19C LTR ERVK -13 598 284 5 638 250 100 19 39 chr9 6958760 6958812 -117117360 + CT-rich Low_complexity Low_complexity 5 55 0 5 638 816 161 42 0 chr9 6958814 6958957 -117117215 - B1_Mur4 SINE Alu 0 150 2 5 638 752 146 0 24 chr9 6959554 6959722 -117116450 - Lx3_Mus LINE L1 -8 7001 6838 5 638 683 66 0 11 chr9 6959734 6959826 -117116346 - RLTR45 LTR ERVK -117 365 275 5 638 12384 78 38 8 chr9 6959826 6962271 -117113901 - Lx3_Mus LINE L1 -159 6850 4331 5 638 4134 54 0 15 chr9 6962271 6962801 -117113371 - L1Md_F2 LINE L1 0 6582 6061 5 638 12384 81 24 10 chr9 6962801 6963112 -117113060 - Lx3_Mus LINE L1 -1556 4330 4031 5 638 356 0 23 0 chr9 6963242 6963286 -117112886 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 638 189 175 0 0 chr9 6963360 6963400 -117112772 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 638 451 304 198 13 chr9 6963414 6963651 -117112521 - B4A SINE B4 0 292 12 5 638 365 318 5 72 chr9 6964024 6964265 -117111907 + (TG)n Simple_repeat Simple_repeat 1 224 0 5 638 228 293 84 32 chr9 6965790 6965945 -117110227 - RLTR21 LTR ERVK -322 1250 1088 5 638 501 17 0 0 chr9 6966174 6966232 -117109940 + (GGA)n Simple_repeat Simple_repeat 3 60 0 5 638 6190 74 7 5 chr9 6967573 6968379 -117107793 - RLTR13C2 LTR ERVK 0 808 1 5 638 782 200 55 45 chr9 6969008 6969207 -117106965 - ORR1D1 LTR MaLR -134 240 40 5 638 23 86 0 0 chr9 6969550 6969608 -117106564 + AT_rich Low_complexity Low_complexity 1 58 0 5 638 1690 255 159 12 chr9 6971090 6971442 -117104730 - Lx6 LINE L1 -886 6574 6199 5 638 456 19 0 0 chr9 6971442 6971495 -117104677 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 638 1690 255 159 12 chr9 6971495 6971721 -117104451 - Lx6 LINE L1 -1262 6198 5913 5 638 2200 231 115 15 chr9 6971719 6971866 -117104306 + Lx6 LINE L1 6592 6776 -684 5 638 270 73 0 0 chr9 6971866 6971907 -117104265 + (CTAA)n Simple_repeat Simple_repeat 3 43 0 5 638 2678 64 3 11 chr9 6971913 6972262 -117103910 + ORR1A0 LTR MaLR 1 346 0 5 638 2200 224 121 21 chr9 6972262 6972720 -117103452 + Lx6 LINE L1 6787 7543 -153 5 638 396 88 0 0 chr9 6972720 6972777 -117103395 + (CATAT)n Simple_repeat Simple_repeat 1 57 0 5 638 852 209 134 34 chr9 6972777 6972925 -117103247 + Lx6 LINE L1 7544 7689 -7 5 638 5660 75 3 1 chr9 6972942 6973714 -117102458 - L1_Mus1 LINE L1 -3 6564 5792 5 638 1092 115 0 0 chr9 6973714 6973862 -117102310 + B1_Mus1 SINE Alu 1 148 0 5 638 205 178 0 0 chr9 6973862 6973907 -117102265 + A-rich Low_complexity Low_complexity 4 48 0 5 638 26764 127 19 31 chr9 6973908 6979245 -117096927 - L1Md_F LINE L1 -75 5811 538 5 638 333 270 14 97 chr9 6979369 6979636 -117096536 - L1VL1 LINE L1 -6027 395 44 5 638 584 273 14 28 chr9 6980110 6980253 -117095919 + ID_B1 SINE B4 69 209 -15 5 638 22 0 0 0 chr9 6980263 6980285 -117095887 + AT_rich Low_complexity Low_complexity 1 22 0 5 638 788 264 38 9 chr9 6980560 6980770 -117095402 - B3 SINE B2 0 216 1 5 638 447 299 60 34 chr9 6981419 6981686 -117094486 + Lx8 LINE L1 7103 7376 -97 5 638 440 302 86 48 chr9 6982523 6982791 -117093381 + B4A SINE B4 2 279 -13 5 638 2880 43 3 0 chr9 6984215 6984560 -117091612 - ORR1A0 LTR MaLR 0 346 1 5 638 1605 209 159 11 chr9 6986130 6986594 -117089578 + MT2A LTR ERVL 1 533 0 5 638 429 293 94 0 chr9 6986828 6987094 -117089078 + L1ME2 LINE L1 5721 6011 -153 5 638 405 0 0 0 chr9 6987953 6987998 -117088174 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 638 4992 38 0 0 chr9 6989591 6990320 -117085852 - L1Md_F2 LINE L1 -595 5987 5259 5 638 4425 69 0 9 chr9 6990320 6990893 -117085279 + L1Md_F2 LINE L1 5996 6563 -19 5 638 227 294 57 83 chr9 6991038 6991231 -117084941 + L1M5 LINE L1 5630 5817 -423 5 638 338 91 0 18 chr9 6991300 6991356 -117084816 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 638 21 36 0 0 chr9 6992282 6992310 -117083862 + AT_rich Low_complexity Low_complexity 1 28 0 5 638 569 307 117 4 chr9 6994261 6994526 -117081646 - Lx8 LINE L1 -98 7375 7081 5 638 9974 164 3 3 chr9 6997513 6999372 -117076800 - Lx2B LINE L1 -18 5859 4002 5 638 3330 128 6 48 chr9 6999374 6999999 -117076173 + Lx2B LINE L1 5871 6469 -531 5 638 2501 134 71 7 chr9 7000020 7000455 -117075717 + Lx2B LINE L1 6518 6980 -20 1 638 553 275 107 43 chr9 7002016 7002343 -117073829 + L1M3 LINE L1 5282 5629 -554 2 638 264 30 0 0 chr9 7002696 7002729 -117073443 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 638 234 0 0 0 chr9 7004016 7004042 -117072130 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 638 1966 149 49 6 chr9 7005137 7005481 -117070691 + ORR1B2 LTR MaLR 1 359 -8 5 638 21 36 0 0 chr9 7006062 7006090 -117070082 + AT_rich Low_complexity Low_complexity 1 28 0 6 638 325 259 62 87 chr9 7006418 7006579 -117069593 - MLT1D LTR MaLR -272 233 77 7 638 26 0 0 0 chr9 7006919 7006945 -117069227 + AT_rich Low_complexity Low_complexity 1 26 0 8 638 984 292 131 29 chr9 7006970 7007427 -117068745 + Lx9 LINE L1 6957 7458 -186 9 638 444 104 0 0 chr9 7007427 7007494 -117068678 + (TATG)n Simple_repeat Simple_repeat 4 70 0 1 638 269 349 17 88 chr9 7007494 7007613 -117068559 + Lx9 LINE L1 7330 7429 -44 9 638 180 111 0 0 chr9 7007618 7007645 -117068527 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 638 812 240 92 0 chr9 7008108 7008304 -117067868 - ID_B1 SINE B4 -5 219 6 1 638 324 0 0 0 chr9 7010474 7010510 -117065662 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 638 249 159 0 0 chr9 7010648 7010692 -117065480 + T-rich Low_complexity Low_complexity 1 44 0 1 638 1210 48 0 0 chr9 7010692 7010839 -117065333 - B1_Mus2 SINE Alu 0 147 1 1 638 527 312 95 44 chr9 7012606 7013031 -117063141 - MER31A LTR ERV1 0 661 4 1 638 420 304 91 16 chr9 7013642 7013819 -117062353 - B3 SINE B2 -20 175 1 1 638 689 301 64 5 chr9 7013835 7014039 -117062133 + B4A SINE B4 1 216 -76 1 638 28 29 0 0 chr9 7014094 7014129 -117062043 + AT_rich Low_complexity Low_complexity 1 35 0 1 638 2255 196 57 86 chr9 7014526 7015051 -117061121 + RLTR18B LTR ERVK 1 510 -2 2 638 26 74 0 0 chr9 7015222 7015276 -117060896 + AT_rich Low_complexity Low_complexity 1 54 0 2 638 21 0 0 0 chr9 7015935 7015956 -117060216 + AT_rich Low_complexity Low_complexity 1 21 0 2 638 3081 42 0 5 chr9 7018603 7018983 -117057189 - L1Md_A LINE L1 -1 6581 6204 2 638 23 0 0 0 chr9 7020567 7020590 -117055582 + AT_rich Low_complexity Low_complexity 1 23 0 2 638 370 197 53 0 chr9 7021735 7021811 -117054361 - ORR1D1 LTR MaLR -78 296 217 2 638 1672 177 49 38 chr9 7022458 7022828 -117053344 + ORR1D1 LTR MaLR 1 374 0 2 638 349 324 55 44 chr9 7022828 7023009 -117053163 + MER20 DNA MER1_type 33 215 -4 2 638 624 167 85 23 chr9 7023498 7023627 -117052545 + B1_Mus2 SINE Alu 9 145 -2 2 638 222 62 0 0 chr9 7023628 7023660 -117052512 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 2 638 180 0 0 0 chr9 7024283 7024303 -117051869 + (T)n Simple_repeat Simple_repeat 1 20 0 3 638 1109 75 0 13 chr9 7024303 7024452 -117051720 - B1_Mus2 SINE Alu 0 147 1 3 638 26 30 0 0 chr9 7024476 7024509 -117051663 + AT_rich Low_complexity Low_complexity 1 33 0 3 638 451 330 137 19 chr9 7025923 7026184 -117049988 + MLT1G LTR MaLR 5 283 -272 3 638 15349 119 25 28 chr9 7026184 7026978 -117049194 + L1VL2 LINE L1 463 1268 -5366 3 638 8319 35 2 0 chr9 7026978 7027971 -117048201 + L1Md_F2 LINE L1 5588 6582 0 3 638 15349 91 17 28 chr9 7027971 7028115 -117048057 + L1VL2 LINE L1 1269 1399 -2515 3 638 3903 41 0 34 chr9 7028115 7028619 -117047553 + L1Md_F2 LINE L1 6096 6582 0 3 638 15349 100 17 28 chr9 7028619 7031192 -117044980 + L1VL2 LINE L1 1400 3959 -1927 3 638 227 305 0 17 chr9 7032003 7032063 -117044109 - MLT1A0 LTR MaLR -78 389 331 3 638 482 146 10 0 chr9 7032099 7032195 -117043977 - Lx LINE L1 -4 6650 6554 3 638 390 274 42 54 chr9 7032221 7032387 -117043785 - MLT1A0 LTR MaLR -179 186 23 3 638 405 305 60 15 chr9 7033389 7033491 -117042681 + B1F SINE Alu 3 112 -37 3 638 1065 225 199 64 chr9 7033491 7034019 -117042153 + MT2B LTR ERVL 1 599 -2 4 638 405 305 60 15 chr9 7034019 7034049 -117042123 + B1F SINE Alu 113 141 -8 3 638 1291 57 6 6 chr9 7034059 7034237 -117041935 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 638 226 261 31 0 chr9 7034411 7034476 -117041696 + CT-rich Low_complexity Low_complexity 3 69 0 4 638 251 313 82 39 chr9 7034476 7034682 -117041490 + ORR1C1 LTR MaLR 164 378 0 4 638 987 246 79 84 chr9 7036151 7036542 -117039630 - RLTR23 LTR ERV1 0 430 42 4 638 189 94 0 0 chr9 7036551 7036583 -117039589 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 638 21 57 0 0 chr9 7037083 7037118 -117039054 + AT_rich Low_complexity Low_complexity 1 35 0 4 638 227 141 282 0 chr9 7037214 7037292 -117038880 + Lx9 LINE L1 7542 7641 -3 4 638 21 100 0 0 chr9 7038409 7038479 -117037693 + AT_rich Low_complexity Low_complexity 1 70 0 4 638 562 234 77 1 chr9 7038613 7038886 -117037286 + L1M3 LINE L1 5179 5481 -702 4 638 284 330 18 0 chr9 7039134 7039243 -117036929 + MTEb LTR MaLR 269 379 0 5 638 4076 63 39 2 chr9 7039384 7039923 -117036249 + L1_Mus2 LINE L1 6006 6564 -2 5 638 217 151 38 0 chr9 7040586 7040639 -117035533 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 5 638 600 272 142 23 chr9 7040724 7040984 -117035188 + B4A SINE B4 2 292 0 5 638 330 87 0 0 chr9 7041067 7041113 -117035059 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 5 638 534 304 151 41 chr9 7041114 7041406 -117034766 + MER68 LTR ERVL 6 329 -234 5 638 345 233 14 14 chr9 7041478 7041552 -117034620 + MER68 LTR ERVL 334 407 -156 5 638 3909 154 35 66 chr9 7043010 7043802 -117032370 + RLTR25B LTR ERVK 1 768 -260 5 638 536 189 120 24 chr9 7043805 7043874 -117032298 + RLTR25B LTR ERVK 892 962 -66 5 638 458 77 64 0 chr9 7043874 7043952 -117032220 - L1_Mus4 LINE L1 -2 6634 6552 5 638 536 189 120 24 chr9 7043952 7044007 -117032165 + RLTR25B LTR ERVK 963 1028 0 5 638 2528 87 18 3 chr9 7046316 7046696 -117029476 + MTB LTR MaLR 1 386 -14 5 638 325 307 0 54 chr9 7047001 7047094 -117029078 + ID_B1 SINE B4 94 181 -43 5 638 296 306 50 67 chr9 7047524 7047643 -117028529 - PB1D10 SINE Alu 0 117 1 6 638 264 200 69 10 chr9 7048008 7048109 -117028063 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 638 25 0 0 0 chr9 7048914 7048939 -117027233 + AT_rich Low_complexity Low_complexity 1 25 0 6 638 4793 64 0 16 chr9 7049461 7050098 -117026074 + L1Md_F2 LINE L1 5952 6578 -4 6 638 1496 185 85 13 chr9 7050611 7050918 -117025254 - ORR1B1 LTR MaLR -25 369 41 6 638 245 204 0 39 chr9 7052097 7052148 -117024024 - B4A SINE B4 -18 274 226 6 638 212 328 66 0 chr9 7052212 7052273 -117023899 + ID SINE ID 19 83 -141 6 638 226 286 0 20 chr9 7052224 7052274 -117023898 + ID4 SINE ID 33 81 -2 6 638 419 288 27 0 chr9 7052344 7052455 -117023717 - ID_B1 SINE B4 -21 203 90 6 638 5764 142 106 3 chr9 7053309 7054742 -117021430 - Lx LINE L1 -6 6648 5053 6 638 594 157 0 0 chr9 7054763 7054865 -117021307 + L1_Mur1 LINE L1 4636 4737 -1149 7 638 207 0 0 0 chr9 7054865 7054888 -117021284 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 638 347 271 57 44 chr9 7055314 7055472 -117020700 + HAL1 LINE L1 1427 1586 -921 7 638 318 362 54 42 chr9 7055476 7055643 -117020529 - MER5A DNA MER1_type -5 184 16 7 638 1768 187 40 7 chr9 7056245 7056960 -117019212 + L1_Mur2 LINE L1 882 1620 -4257 7 638 501 114 0 0 chr9 7056955 7057034 -117019138 - L1_Mur2 LINE L1 -516 5361 5283 7 638 8282 52 8 7 chr9 7057051 7058837 -117017335 - L1Md_F2 LINE L1 0 6582 4793 7 638 2930 177 39 2 chr9 7058825 7059415 -117016757 - L1_Mm LINE L1 -572 5311 4700 7 638 8416 118 38 7 chr9 7059413 7060992 -117015180 + Lx2 LINE L1 5372 6985 -12 7 638 279 0 0 0 chr9 7061023 7061054 -117015118 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 638 13439 154 67 21 chr9 7061062 7062476 -117013696 + L1_Mur2 LINE L1 1604 3072 -2805 7 638 360 0 0 0 chr9 7062476 7062516 -117013656 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 638 13439 154 67 21 chr9 7062516 7063895 -117012277 + L1_Mur2 LINE L1 3073 4531 -1346 7 638 2339 88 6 0 chr9 7063895 7064224 -117011948 + L1_Mus1 LINE L1 6237 6567 0 8 638 13439 154 67 21 chr9 7064224 7064310 -117011862 + L1_Mur2 LINE L1 4532 4615 -1262 7 638 36867 6 0 1 chr9 7064304 7069683 -117006489 + L1Md_A LINE L1 214 5586 -297 8 638 9056 3 0 0 chr9 7069683 7070679 -117005493 + L1Md_A LINE L1 5587 6582 0 8 638 1361 146 28 0 chr9 7070684 7070938 -117005234 + L1_Mur2 LINE L1 4595 4855 -1022 7 638 699 271 148 63 chr9 7073364 7073695 -117002477 + MTE2b LTR MaLR 1 359 -20 8 638 23 0 0 0 chr9 7073745 7073768 -117002404 + AT_rich Low_complexity Low_complexity 1 23 0 8 638 183 288 205 9 chr9 7073890 7074002 -117002170 + MIRb SINE MIR 26 159 -109 8 638 250 320 212 5 chr9 7074016 7074214 -117001958 + MTE-int LTR MaLR 5 243 -1337 8 638 417 86 0 0 chr9 7074432 7074490 -117001682 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 8 638 600 14 0 0 chr9 7074492 7074561 -117001611 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 8 638 944 299 239 24 chr9 7074725 7075425 -117000747 + MTE-int LTR MaLR 721 1570 -10 8 638 207 0 0 0 chr9 7075712 7075735 -117000437 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 8 638 393 188 12 48 chr9 7076424 7076508 -116999664 - MTD LTR MaLR -327 92 12 9 638 222 91 0 0 chr9 7076508 7076541 -116999631 + (A)n Simple_repeat Simple_repeat 1 33 0 9 638 260 206 20 89 chr9 7076574 7076675 -116999497 + RLTR25B LTR ERVK 428 521 -507 9 638 728 48 9 46 chr9 7076594 7076687 -116999485 + B1_Mus2 SINE Alu 44 137 -10 9 638 188 0 74 0 chr9 7076687 7076714 -116999458 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 638 728 48 9 46 chr9 7076714 7076728 -116999444 + B1_Mus2 SINE Alu 138 147 0 9 638 1561 233 123 66 chr9 7077070 7077648 -116998524 + RMER19C LTR ERVK 1 611 0 9 639 840 169 0 0 chr9 7078118 7078272 -116997900 + CT-rich Low_complexity Low_complexity 3 156 0 9 639 447 163 20 71 chr9 7078275 7078473 -116997699 - RMER17C LTR ERVK -137 273 86 9 639 1056 121 28 22 chr9 7078582 7078760 -116997412 + URR1A DNA MER1_type 48 226 0 9 639 1693 267 119 22 chr9 7079353 7080230 -116995942 + Lx8 LINE L1 6380 7341 -132 9 639 24 0 0 0 chr9 7080460 7080484 -116995688 + AT_rich Low_complexity Low_complexity 1 24 0 1 639 229 303 180 0 chr9 7080575 7080599 -116995573 - B4A SINE B4 -46 246 103 1 639 398 286 20 0 chr9 7080599 7080697 -116995475 - PB1D10 SINE Alu 0 117 18 1 639 30 83 0 0 chr9 7081442 7081514 -116994658 + AT_rich Low_complexity Low_complexity 1 72 0 1 639 29 0 0 0 chr9 7082628 7082657 -116993515 + AT_rich Low_complexity Low_complexity 1 29 0 1 639 353 297 33 33 chr9 7082746 7082868 -116993304 - B4 SINE B4 -78 214 93 1 639 202 116 70 0 chr9 7083161 7083204 -116992968 + T-rich Low_complexity Low_complexity 4 49 0 1 639 538 288 108 79 chr9 7083429 7083708 -116992464 - B4 SINE B4 -5 287 1 1 639 477 371 50 5 chr9 7083833 7084055 -116992117 + L2 LINE L2 1086 1317 -2102 1 639 660 218 30 8 chr9 7084539 7084673 -116991499 + B1_Mus1 SINE Alu 1 137 -11 1 639 236 204 56 0 chr9 7085275 7085329 -116990843 + Lx8 LINE L1 7284 7340 -133 1 639 13086 151 24 52 chr9 7086256 7088857 -116987315 + L1_Mus1 LINE L1 355 2847 -3036 1 639 3464 25 2 0 chr9 7088857 7089252 -116986920 - MTA_Mm LTR MaLR 0 396 1 1 639 9208 29 4 1 chr9 7089252 7090347 -116985825 - MTA_Mm-int LTR MaLR 0 1098 1 1 639 3476 23 2 0 chr9 7090347 7090742 -116985430 - MTA_Mm LTR MaLR 0 396 1 1 639 13086 124 4 56 chr9 7090742 7091485 -116984687 + L1_Mus1 LINE L1 2848 3589 -2294 1 639 31560 77 1 18 chr9 7091486 7096654 -116979518 + L1Md_F2 LINE L1 510 5586 -297 1 639 8110 51 1 0 chr9 7096654 7097649 -116978523 + L1Md_F2 LINE L1 5587 6582 0 1 639 14196 102 10 15 chr9 7097649 7100660 -116975512 + L1_Mus1 LINE L1 3578 6567 0 1 639 185 167 0 18 chr9 7100896 7100951 -116975221 + A-rich Low_complexity Low_complexity 5 58 0 1 639 217 284 25 63 chr9 7101831 7101910 -116974262 - PB1D10 SINE Alu -7 110 35 1 639 431 239 197 0 chr9 7102644 7102786 -116973386 + B3 SINE B2 35 204 -12 1 639 475 303 83 0 chr9 7102990 7103122 -116973050 + B3A SINE B2 53 195 -3 1 639 262 309 36 7 chr9 7103164 7103301 -116972871 + GA-rich Low_complexity Low_complexity 3 143 0 1 639 36 106 0 0 chr9 7103909 7104050 -116972122 + AT_rich Low_complexity Low_complexity 1 141 0 1 639 451 293 91 9 chr9 7104174 7104384 -116971788 - Lx8 LINE L1 -2 7471 7245 1 639 514 250 64 29 chr9 7104561 7104734 -116971438 + MTEa LTR MaLR 15 193 -186 1 639 9061 82 24 19 chr9 7104734 7106131 -116970041 + Lx3_Mus LINE L1 5606 7009 0 1 639 189 0 0 0 chr9 7106146 7106167 -116970005 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 639 560 271 89 11 chr9 7106167 7106357 -116969815 + MTEa LTR MaLR 169 373 -6 1 639 309 133 0 0 chr9 7106817 7106862 -116969310 - ORR1C2 LTR MaLR 0 384 340 1 639 543 263 21 42 chr9 7106951 7107094 -116969078 - B1F2 SINE Alu 0 149 10 1 639 262 398 40 75 chr9 7106959 7107133 -116969039 - B4 SINE B4 -69 223 56 1 639 216 235 0 19 chr9 7107195 7107247 -116968925 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1 639 640 197 114 0 chr9 7107249 7107381 -116968791 - ORR1C2 LTR MaLR -71 313 167 1 639 255 211 35 0 chr9 7107376 7107433 -116968739 - ORR1C2 LTR MaLR -323 61 3 1 639 227 158 73 73 chr9 7107455 7107537 -116968635 - Charlie1 DNA MER1_type -1828 953 872 1 639 27 0 0 0 chr9 7107601 7107628 -116968544 + AT_rich Low_complexity Low_complexity 1 27 0 1 639 413 289 20 27 chr9 7107894 7108040 -116968132 + B1F SINE Alu 5 149 0 1 639 351 316 130 17 chr9 7108075 7108252 -116967920 + L1MD LINE L1 4412 4608 -1538 1 639 236 271 32 48 chr9 7108282 7108406 -116967766 + L1MD LINE L1 4712 4833 -1313 1 639 6450 32 1 0 chr9 7108595 7109354 -116966818 + L1Md_T LINE L1 5821 6580 -2 1 639 33 0 0 0 chr9 7109354 7109387 -116966785 + AT_rich Low_complexity Low_complexity 1 33 0 1 639 388 273 142 14 chr9 7109387 7109662 -116966510 + L1M2 LINE L1 4948 5257 -886 1 639 341 117 17 0 chr9 7109701 7109761 -116966411 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1 639 37 0 0 0 chr9 7109963 7110000 -116966172 + AT_rich Low_complexity Low_complexity 1 37 0 1 639 257 331 71 24 chr9 7111008 7111135 -116965037 - B1F2 SINE Alu -16 133 1 1 639 371 202 168 20 chr9 7112337 7112438 -116963734 - B1F SINE Alu -3 146 31 1 639 565 278 106 53 chr9 7113973 7114330 -116961842 + L1MA8 LINE L1 5676 6051 -240 1 639 621 348 77 14 chr9 7115087 7115437 -116960735 - MTE2b LTR MaLR -7 372 1 1 639 676 12 0 0 chr9 7116181 7116325 -116959847 - L1Md_T LINE L1 0 6582 6498 1 639 930 189 16 16 chr9 7118196 7118390 -116957782 + B3 SINE B2 23 216 0 1 639 234 259 0 0 chr9 7118633 7118691 -116957481 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1 639 305 335 39 110 chr9 7119283 7119566 -116956606 + ORR1E LTR MaLR 4 266 -108 1 639 256 292 198 8 chr9 7119812 7119933 -116956239 - L2b LINE L2 -74 3301 3158 1 639 21 0 0 0 chr9 7121552 7121573 -116954599 + AT_rich Low_complexity Low_complexity 1 21 0 1 639 22 0 0 0 chr9 7122200 7122222 -116953950 + AT_rich Low_complexity Low_complexity 1 22 0 1 639 652 230 13 26 chr9 7122363 7122515 -116953657 - B1_Mur4 SINE Alu 0 150 1 1 639 2851 48 14 0 chr9 7123129 7123484 -116952688 - L1_Mus2 LINE L1 -610 5956 5597 1 639 737 109 31 0 chr9 7123488 7123655 -116952517 + L1_Mus3 LINE L1 6495 6638 0 1 639 311 269 204 29 chr9 7124007 7124179 -116951993 + LTR83 LTR ERVL 578 779 -1 1 639 709 199 57 0 chr9 7124181 7124322 -116951850 + B1_Mur2 SINE Alu 1 149 0 1 639 1088 180 57 0 chr9 7126359 7126570 -116949602 + URR1B DNA MER1_type 2 224 -1 1 639 344 279 39 2 chr9 7127012 7127160 -116949012 - L1_Mur3 LINE L1 -3861 2016 1861 1 639 287 326 73 48 chr9 7127379 7127627 -116948545 + L1MD3 LINE L1 7330 7583 -412 1 639 325 299 35 0 chr9 7127744 7127831 -116948341 - PB1D10 SINE Alu -16 101 12 1 639 254 284 31 21 chr9 7130003 7130100 -116946072 + PB1D10 SINE Alu 10 107 -10 1 639 200 31 62 0 chr9 7130281 7130313 -116945859 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 639 27 49 0 0 chr9 7131198 7131239 -116944933 + AT_rich Low_complexity Low_complexity 1 41 0 1 639 216 0 0 0 chr9 7131679 7131703 -116944469 + (A)n Simple_repeat Simple_repeat 1 24 0 1 639 1238 256 161 41 chr9 7132174 7132692 -116943480 + Lx6 LINE L1 6479 7431 -29 1 639 252 0 0 0 chr9 7132693 7132721 -116943451 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1 639 302 252 148 9 chr9 7132954 7133062 -116943110 + L1MEf LINE L1 792 914 -5286 1 639 1074 75 7 0 chr9 7133223 7133369 -116942803 + B1_Mus2 SINE Alu 1 147 0 1 639 275 161 18 0 chr9 7133379 7133435 -116942737 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 639 306 321 152 9 chr9 7133525 7133874 -116942298 + L1MEf LINE L1 1489 1887 -4313 1 639 447 132 406 0 chr9 7133879 7133985 -116942187 + B1_Mur3 SINE Alu 1 149 0 1 639 210 37 0 0 chr9 7134024 7134051 -116942121 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 639 196 219 12 12 chr9 7134051 7134134 -116942038 + GA-rich Low_complexity Low_complexity 4 86 0 1 639 453 36 0 0 chr9 7134535 7134590 -116941582 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 639 233 281 200 27 chr9 7135910 7136060 -116940112 + RLTR12B LTR ERVK 47 222 -306 1 639 216 0 0 0 chr9 7136579 7136603 -116939569 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 639 378 0 0 0 chr9 7137276 7137318 -116938854 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 639 437 355 70 0 chr9 7138329 7138515 -116937657 - MER58A DNA MER1_type -19 205 7 1 639 25 65 0 0 chr9 7138515 7138561 -116937611 + AT_rich Low_complexity Low_complexity 1 46 0 1 639 447 19 0 0 chr9 7138986 7139038 -116937134 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 639 1662 168 88 40 chr9 7140037 7140433 -116935739 + MTC LTR MaLR 3 417 -4 1 639 413 303 56 32 chr9 7141358 7141484 -116934688 + ID_B1 SINE B4 86 214 -10 1 639 468 77 0 0 chr9 7141511 7141576 -116934596 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 639 265 244 46 11 chr9 7143432 7143519 -116932653 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 639 242 194 81 0 chr9 7143486 7143548 -116932624 + (CATG)n Simple_repeat Simple_repeat 4 70 0 1 639 345 375 130 17 chr9 7143558 7143789 -116932383 - B4A SINE B4 -35 257 1 1 639 794 261 83 5 chr9 7144586 7144779 -116931393 + B3 SINE B2 9 216 0 1 639 4062 105 36 104 chr9 7145758 7146564 -116929608 - RMER17A LTR ERVK 0 751 1 1 639 195 0 86 0 chr9 7146573 7146608 -116929564 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 639 29 94 0 0 chr9 7146608 7146693 -116929479 + AT_rich Low_complexity Low_complexity 1 85 0 1 639 399 284 0 10 chr9 7146773 7146876 -116929296 + ID_B1 SINE B4 119 220 -4 1 639 228 240 133 0 chr9 7146881 7146956 -116929216 + L1_Rod LINE L1 3649 3733 -2407 1 639 344 260 32 60 chr9 7147006 7147192 -116928980 + L1_Rod LINE L1 3828 4043 -2100 1 639 219 69 0 0 chr9 7147826 7147855 -116928317 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1 639 909 236 38 9 chr9 7148045 7148255 -116927917 + B3 SINE B2 1 216 0 1 639 428 222 131 0 chr9 7148950 7149049 -116927123 - PB1D10 SINE Alu -5 112 1 1 639 32 26 0 0 chr9 7149159 7149198 -116926974 + AT_rich Low_complexity Low_complexity 1 39 0 1 639 213 340 87 0 chr9 7149365 7149468 -116926704 + PB1D10 SINE Alu 4 115 -2 1 639 681 226 0 7 chr9 7149523 7149670 -116926502 + B1_Mus1 SINE Alu 2 147 -1 1 639 218 217 233 35 chr9 7149729 7149815 -116926357 - PB1D9 SINE Alu -9 111 9 1 639 3351 181 53 25 chr9 7149840 7150188 -116925984 + Lx9 LINE L1 6869 7232 -412 1 639 2425 118 121 41 chr9 7150188 7150628 -116925544 + MT2C_Mm LTR ERVL 1 475 0 1 639 3351 181 53 25 chr9 7150628 7151033 -116925139 + Lx9 LINE L1 7233 7643 -1 1 639 305 324 110 9 chr9 7151273 7151382 -116924790 + PB1 SINE Alu 6 125 -2 1 639 351 256 13 0 chr9 7151391 7151469 -116924703 + ID4 SINE ID 3 81 -2 1 639 878 89 58 29 chr9 7151978 7152117 -116924055 + B1_Mur4 SINE Alu 1 143 -7 2 639 12811 26 12 1 chr9 7152134 7153699 -116922473 - L1Md_T LINE L1 -655 5927 4347 2 639 5494 34 0 0 chr9 7153699 7154346 -116921826 + L1Md_T LINE L1 5936 6582 0 2 639 228 23 21 64 chr9 7154881 7154928 -116921244 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 2 639 541 172 0 0 chr9 7154928 7155015 -116921157 - B1_Mur2 SINE Alu -14 135 49 2 639 6032 73 5 4 chr9 7155728 7156550 -116919622 + RLTR22_Mus LTR ERVK 1 823 -985 2 639 367 268 77 92 chr9 7156709 7157006 -116919166 + RMER12 LTR ERVK 1101 1613 -195 2 639 26 50 0 0 chr9 7158379 7158419 -116917753 + AT_rich Low_complexity Low_complexity 1 40 0 2 639 201 74 0 0 chr9 7159126 7159153 -116917019 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 2 639 342 0 0 0 chr9 7159153 7159191 -116916981 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 639 295 310 93 0 chr9 7159277 7159406 -116916766 + L1MC4a LINE L1 7733 7873 -9 2 639 251 329 123 25 chr9 7160617 7160779 -116915393 + L2 LINE L2 2575 2752 -667 2 639 254 279 243 32 chr9 7160939 7161128 -116915044 - Tigger7 DNA MER2_type -1884 607 379 2 639 1134 262 78 20 chr9 7161129 7161566 -116914606 + Lx7 LINE L1 5516 5998 -1475 2 639 861 233 108 5 chr9 7161693 7161887 -116914285 + B3 SINE B2 2 215 -1 2 639 880 290 124 14 chr9 7161896 7162260 -116913912 + Lx7 LINE L1 6134 6537 -936 2 639 1089 181 34 83 chr9 7162260 7162525 -116913647 + ORR1D1 LTR MaLR 1 252 -122 2 639 1016 97 13 0 chr9 7162951 7163105 -116913067 + (GGGGA)n Simple_repeat Simple_repeat 5 160 0 2 639 335 320 72 39 chr9 7165310 7165463 -116910709 + B3A SINE B2 40 197 -1 2 639 452 350 78 44 chr9 7166661 7167005 -116909167 + ORR1E LTR MaLR 1 356 -3 2 639 697 261 216 20 chr9 7167361 7167662 -116908510 + MTE2a LTR MaLR 20 379 0 2 639 717 263 112 15 chr9 7167706 7167903 -116908269 + B3 SINE B2 1 216 0 2 639 1382 74 16 11 chr9 7167908 7168099 -116908073 + B2_Mm2 SINE B2 2 193 -2 2 639 1153 75 0 0 chr9 7170010 7170156 -116906016 + B1_Mus2 SINE Alu 2 147 0 2 639 845 228 48 0 chr9 7170341 7170508 -116905664 + B3A SINE B2 2 176 -22 2 639 21 0 0 0 chr9 7170513 7170534 -116905638 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 533 168 9 0 chr9 7170717 7170824 -116905348 + GA-rich Low_complexity Low_complexity 4 111 0 2 639 2589 23 0 0 chr9 7171140 7171447 -116904725 - L1_Mm LINE L1 -518 5365 5059 2 639 201 39 0 0 chr9 7171447 7171473 -116904699 + (A)n Simple_repeat Simple_repeat 1 26 0 2 639 487 252 30 54 chr9 7171771 7171939 -116904233 + RSINE1 SINE B4 2 165 0 2 639 602 291 147 31 chr9 7172294 7172553 -116903619 - B4A SINE B4 -2 290 2 2 639 1208 34 7 0 chr9 7173270 7173416 -116902756 + B1_Mus1 SINE Alu 2 148 0 2 639 24 53 0 0 chr9 7173692 7173730 -116902442 + AT_rich Low_complexity Low_complexity 1 38 0 2 639 434 333 168 15 chr9 7173830 7174104 -116902068 - MER82 DNA MER2_type -128 525 210 2 639 1640 137 170 42 chr9 7174296 7174632 -116901540 - MTC LTR MaLR 0 421 43 2 639 183 42 0 0 chr9 7174677 7174701 -116901471 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 639 234 0 0 0 chr9 7175776 7175802 -116900370 + (CATA)n Simple_repeat Simple_repeat 4 29 0 2 639 230 291 48 19 chr9 7175965 7176070 -116900102 + PB1D10 SINE Alu 1 108 -9 2 639 246 306 131 10 chr9 7176351 7176450 -116899722 + MER58B DNA MER1_type 139 249 -92 2 639 259 330 9 0 chr9 7177315 7177421 -116898751 + PB1D7 SINE Alu 3 109 -11 2 639 355 218 260 46 chr9 7177429 7177602 -116898570 + B3 SINE B2 1 210 -6 2 639 753 194 0 0 chr9 7178511 7178635 -116897537 - B3 SINE B2 -92 124 1 2 639 23 0 0 0 chr9 7179007 7179030 -116897142 + AT_rich Low_complexity Low_complexity 1 23 0 2 639 457 289 48 27 chr9 7179324 7179470 -116896702 + B1F SINE Alu 1 149 0 2 639 309 290 201 56 chr9 7179715 7179894 -116896278 + MLT1I LTR MaLR 196 400 -11 2 639 558 279 28 35 chr9 7181118 7181259 -116894913 + RSINE1 SINE B4 4 143 -22 2 639 233 278 141 43 chr9 7181492 7181690 -116894482 - RMER15 LTR ERVL -13 562 299 2 639 201 158 0 0 chr9 7181751 7181789 -116894383 + A-rich Low_complexity Low_complexity 1 38 0 2 639 248 312 25 0 chr9 7181803 7181883 -116894289 - PB1D10 SINE Alu -15 102 21 2 639 240 262 215 0 chr9 7182002 7182109 -116894063 + RMER15 LTR ERVL 1 130 -445 2 639 428 248 28 9 chr9 7182190 7182296 -116893876 + RMER15 LTR ERVL 422 529 -46 2 639 333 0 0 0 chr9 7182988 7183025 -116893147 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 639 261 301 31 31 chr9 7183485 7183581 -116892591 + RSINE1 SINE B4 42 137 -28 2 639 1709 107 4 16 chr9 7185761 7186018 -116890154 + L1_Mus1 LINE L1 6314 6567 0 2 639 212 278 125 0 chr9 7187622 7187694 -116888478 - MIRb SINE MIR -69 199 119 2 639 276 289 39 49 chr9 7187791 7187893 -116888279 - L2a LINE L2 -6 3420 3320 2 639 487 246 16 66 chr9 7188401 7188523 -116887649 + PB1D9 SINE Alu 5 120 0 2 639 24 32 0 0 chr9 7188853 7188884 -116887288 + AT_rich Low_complexity Low_complexity 1 31 0 2 639 747 196 21 22 chr9 7190023 7190218 -116885954 - B3 SINE B2 -4 191 1 2 639 28920 72 8 2 chr9 7190735 7195308 -116880864 - L1Md_F2 LINE L1 0 6654 2017 2 639 2433 149 22 35 chr9 7195308 7195768 -116880404 - RMER6A LTR ERVK -302 454 1 2 639 611 217 204 0 chr9 7197176 7197328 -116878844 + B3 SINE B2 23 205 -11 2 639 702 333 51 4 chr9 7197577 7197851 -116878321 + B4A SINE B4 3 289 -3 2 639 699 224 20 20 chr9 7198146 7198296 -116877876 + B3 SINE B2 67 216 0 2 639 370 242 110 39 chr9 7198293 7198448 -116877724 - RCHARR1 DNA MER1_type -235 739 574 2 639 1615 274 60 46 chr9 7198465 7198695 -116877477 - RCHARR1 DNA MER1_type -457 517 278 2 639 2281 63 83 0 chr9 7198695 7198997 -116877175 - ORR1A2 LTR MaLR 0 327 1 2 639 1615 274 60 46 chr9 7198997 7199268 -116876904 - RCHARR1 DNA MER1_type -697 277 9 2 639 1747 208 76 13 chr9 7199983 7200363 -116875809 - Lx6 LINE L1 -343 7117 6714 2 639 237 347 10 10 chr9 7200493 7200589 -116875583 - B4A SINE B4 -196 96 1 2 639 292 254 0 53 chr9 7200583 7200603 -116875569 - B4 SINE B4 -137 155 86 2 639 296 170 0 19 chr9 7200603 7200657 -116875515 - PB1D9 SINE Alu -67 53 1 2 639 232 288 33 33 chr9 7200753 7200814 -116875358 - PB1D10 SINE Alu -17 100 40 2 639 354 107 0 0 chr9 7200815 7200871 -116875301 + (TATG)n Simple_repeat Simple_repeat 4 59 0 2 639 218 325 65 0 chr9 7201100 7201177 -116874995 + L2 LINE L2 1923 2004 -1415 2 639 3607 36 0 13 chr9 7201579 7202026 -116874146 - L1Md_F2 LINE L1 -14 6568 6128 2 639 27 0 0 0 chr9 7203422 7203449 -116872723 + AT_rich Low_complexity Low_complexity 1 27 0 2 639 227 323 0 97 chr9 7203696 7203768 -116872404 + tRNA-Ala-GCA tRNA tRNA 2 66 -9 2 639 312 219 110 0 chr9 7204643 7204716 -116871456 - PB1D10 SINE Alu -14 103 23 2 639 248 313 132 37 chr9 7204665 7204717 -116871455 - ID_B1 SINE B4 -70 154 94 2 639 210 37 0 0 chr9 7204717 7204744 -116871428 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 639 567 0 0 0 chr9 7204744 7204806 -116871366 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 639 248 313 132 37 chr9 7204806 7204888 -116871284 - ID_B1 SINE B4 -131 93 7 2 639 388 305 91 39 chr9 7205968 7206176 -116869996 + MER102a DNA MER1_type 82 300 -30 2 639 220 290 111 16 chr9 7207720 7207783 -116868389 - ID2 SINE ID -14 69 1 2 639 1156 158 29 29 chr9 7208590 7208799 -116867373 - B3 SINE B2 -7 209 1 2 640 413 277 28 35 chr9 7209660 7209802 -116866370 - B1F SINE Alu -7 142 2 2 640 245 279 230 11 chr9 7211132 7211306 -116864866 + MIR SINE MIR 40 251 -11 2 640 288 299 0 13 chr9 7211357 7211435 -116864737 + ID4_ SINE ID 7 83 0 2 640 597 61 0 0 chr9 7211744 7211826 -116864346 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 640 463 250 16 32 chr9 7211850 7211974 -116864198 - RSINE1 SINE B4 -43 122 1 2 640 191 310 68 29 chr9 7212020 7212123 -116864049 - L2a LINE L2 -299 3127 3021 2 640 208 311 153 19 chr9 7212359 7212575 -116863597 - L2a LINE L2 -797 2622 2378 2 640 207 139 0 0 chr9 7212726 7212762 -116863410 + (T)n Simple_repeat Simple_repeat 1 36 0 2 640 11480 154 17 56 chr9 7212828 7216132 -116860040 - Lx LINE L1 0 6654 3482 2 640 216 0 0 0 chr9 7216132 7216156 -116860016 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 640 1152 157 42 5 chr9 7217760 7217977 -116858195 + URR1B DNA MER1_type 1 225 0 2 640 197 33 0 32 chr9 7218622 7218653 -116857519 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 640 384 208 28 119 chr9 7218676 7218785 -116857387 - B1F2 SINE Alu -43 106 8 2 640 1341 224 160 12 chr9 7222915 7223258 -116852914 + MTD LTR MaLR 12 405 -14 2 640 546 257 73 0 chr9 7223623 7223759 -116852413 - RSINE1 SINE B4 -13 152 7 2 640 271 263 0 0 chr9 7223900 7223957 -116852215 + ID_B1 SINE B4 147 203 -21 2 640 902 42 17 0 chr9 7224086 7224206 -116851966 - B1_Mm SINE Alu -2 145 24 2 640 244 280 67 0 chr9 7224232 7224307 -116851865 + ORR1E LTR MaLR 5 84 -275 2 640 20965 149 19 43 chr9 7225744 7230947 -116845225 - Lx LINE L1 -1 6653 1585 2 640 3134 168 32 2 chr9 7230937 7231538 -116844634 - L1_Mm LINE L1 -465 5418 4800 2 640 2577 123 0 0 chr9 7231534 7231939 -116844233 + L1_Mur1 LINE L1 4436 4840 -1046 2 640 772 289 74 108 chr9 7231951 7232385 -116843787 + MTD LTR MaLR 1 419 0 3 640 400 323 93 19 chr9 7232686 7233008 -116843164 + ORSL-2b DNA Tip100 33 378 -130 3 640 224 91 0 0 chr9 7233081 7233114 -116843058 - B3A SINE B2 -165 33 1 3 640 215 276 89 33 chr9 7233391 7233481 -116842691 + RSINE1 SINE B4 68 162 -3 3 640 362 277 161 11 chr9 7234225 7234411 -116841761 + MER33 DNA MER1_type 1 214 -110 3 640 275 342 91 8 chr9 7234445 7234566 -116841606 - RSINE1 SINE B4 -31 134 4 3 640 440 345 61 57 chr9 7234595 7234875 -116841297 + B4A SINE B4 1 281 -11 3 640 224 246 70 0 chr9 7235155 7235212 -116840960 + ID2 SINE ID 13 73 -10 3 640 549 0 0 0 chr9 7235212 7235273 -116840899 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 640 210 171 0 0 chr9 7235918 7235953 -116840219 + T-rich Low_complexity Low_complexity 1 35 0 3 640 737 165 21 41 chr9 7235956 7236101 -116840071 - B1_Mus2 SINE Alu -5 142 1 3 640 422 301 64 21 chr9 7236137 7236324 -116839848 + B3A SINE B2 1 195 -3 3 640 240 35 0 0 chr9 7236554 7236583 -116839589 + (A)n Simple_repeat Simple_repeat 1 29 0 3 640 329 242 81 76 chr9 7237619 7237829 -116838343 - L1_Mur3 LINE L1 -4451 1429 1219 3 640 453 272 0 6 chr9 7238614 7238857 -116837315 + (CA)n Simple_repeat Simple_repeat 1 241 0 3 640 297 351 0 0 chr9 7239717 7239794 -116836378 + B3 SINE B2 2 78 -138 3 640 270 0 0 0 chr9 7239874 7239904 -116836268 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 640 378 0 0 0 chr9 7239904 7239945 -116836227 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 640 189 349 82 23 chr9 7240680 7240831 -116835341 + MIR SINE MIR 46 213 -55 3 640 267 93 0 0 chr9 7241395 7241438 -116834734 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 3 640 303 28 0 0 chr9 7241558 7241594 -116834578 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 640 975 251 104 6 chr9 7242277 7242597 -116833575 + ORR1E LTR MaLR 6 368 -2 3 640 251 72 0 23 chr9 7243191 7243234 -116832938 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 3 640 1014 155 0 0 chr9 7244564 7244719 -116831453 + MT2A LTR ERVL 1 155 -378 3 640 979 307 101 0 chr9 7244929 7245225 -116830947 - MTEa LTR MaLR -1 378 53 3 640 313 235 14 29 chr9 7245210 7245280 -116830892 - B1_Mus1 SINE Alu -79 69 1 3 640 227 231 0 0 chr9 7245280 7245331 -116830841 - MTEa LTR MaLR -328 51 1 3 640 8484 25 0 0 chr9 7245661 7246698 -116829474 + L1Md_T LINE L1 4550 5586 -297 3 640 8428 34 0 2 chr9 7246698 7247696 -116828476 + L1Md_T LINE L1 5587 6582 0 3 640 296 281 183 14 chr9 7248189 7248402 -116827770 + L1MB5 LINE L1 5817 6065 -109 3 640 3418 60 6 34 chr9 7248467 7248936 -116827236 + L1_Mus3 LINE L1 6177 6632 -6 3 640 337 276 54 24 chr9 7249124 7249291 -116826881 + L1MB8 LINE L1 5892 6063 -115 3 640 34 79 0 0 chr9 7249377 7249453 -116826719 + AT_rich Low_complexity Low_complexity 1 76 0 3 640 914 275 0 0 chr9 7249798 7249980 -116826192 - B3 SINE B2 -30 186 5 3 640 1116 29 73 0 chr9 7250388 7250525 -116825647 - B1_Mus2 SINE Alu 0 147 1 3 640 234 0 0 0 chr9 7251522 7251548 -116824624 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 640 454 289 78 0 chr9 7251552 7251680 -116824492 - ID_B1 SINE B4 -6 218 81 3 640 321 217 30 71 chr9 7251740 7251839 -116824333 - B3 SINE B2 -14 202 108 3 640 443 204 20 10 chr9 7252936 7253035 -116823137 + B3A SINE B2 20 119 -79 3 640 455 286 0 25 chr9 7253087 7253209 -116822963 + PB1D7 SINE Alu 1 119 -1 3 640 212 254 0 0 chr9 7253929 7253992 -116822180 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 640 925 215 81 0 chr9 7254558 7254742 -116821430 + MTD LTR MaLR 13 211 -208 3 640 1337 161 14 5 chr9 7254742 7254961 -116821211 - URR1A DNA MER1_type 0 226 6 3 640 642 217 46 96 chr9 7254961 7254997 -116821175 + CYRA11_Mm Unknown Y-chromosome 172 413 -204 3 640 325 246 0 0 chr9 7254966 7255031 -116821141 + MTD LTR MaLR 204 268 -151 3 640 2925 91 8 2 chr9 7255215 7255613 -116820559 + MTB LTR MaLR 1 400 0 3 640 21 0 0 0 chr9 7256523 7256544 -116819628 + AT_rich Low_complexity Low_complexity 1 21 0 3 640 495 286 121 73 chr9 7256904 7257244 -116818928 - RLTR9A LTR ERVK 0 368 13 3 640 520 293 72 50 chr9 7257275 7257537 -116818635 - Lx9 LINE L1 -358 7286 7019 3 640 1044 275 90 20 chr9 7257556 7257912 -116818260 - Lx9 LINE L1 -957 6687 6307 3 640 810 282 105 23 chr9 7258175 7258433 -116817739 + B4 SINE B4 14 292 0 3 640 452 262 53 38 chr9 7258836 7258967 -116817205 + RSINE1 SINE B4 5 137 -28 3 640 41 48 0 0 chr9 7259035 7259097 -116817075 + AT_rich Low_complexity Low_complexity 1 62 0 3 640 556 248 51 0 chr9 7259198 7259335 -116816837 - B1_Mur1 SINE Alu -5 144 1 3 640 1486 256 31 91 chr9 7259747 7259908 -116816264 - Lx8 LINE L1 0 7473 7334 3 640 1060 96 0 7 chr9 7259908 7260055 -116816117 + B1_Mus2 SINE Alu 2 147 0 3 640 1486 256 31 91 chr9 7260055 7260498 -116815674 - Lx8 LINE L1 -140 7333 6905 3 640 764 141 0 7 chr9 7260498 7260634 -116815538 + (TCC)n Simple_repeat Simple_repeat 2 136 0 3 640 270 0 0 0 chr9 7260634 7260664 -116815508 + (TTA)n Simple_repeat Simple_repeat 3 32 0 3 640 1266 201 41 13 chr9 7260665 7260982 -116815190 - Lx3C LINE L1 -11 6965 6640 3 640 1917 162 0 29 chr9 7260974 7261323 -116814849 + Lx3C LINE L1 6304 6642 -334 3 640 626 188 82 15 chr9 7263277 7263412 -116812760 - B1_Mur4 SINE Alu -6 144 1 3 640 286 295 27 0 chr9 7263534 7263634 -116812538 - MTE2a LTR MaLR 0 419 278 3 640 1302 285 77 0 chr9 7263965 7264305 -116811867 + MTEb LTR MaLR 1 366 -13 3 640 556 273 72 6 chr9 7265436 7265602 -116810570 - ID_B1 SINE B4 -4 220 44 3 640 318 294 94 16 chr9 7265723 7265851 -116810321 + L2a LINE L2 3239 3376 -50 3 640 350 234 78 0 chr9 7265933 7266010 -116810162 + RSINE1 SINE B4 37 119 -46 3 640 207 286 62 16 chr9 7266055 7266119 -116810053 - MIRc SINE MIR -181 87 21 3 640 3484 23 0 0 chr9 7267407 7267803 -116808369 + MTA_Mm LTR MaLR 1 396 0 3 640 9709 11 2 0 chr9 7267803 7268899 -116807273 + MTA_Mm-int LTR MaLR 1 1098 0 3 640 3504 20 0 0 chr9 7268899 7269295 -116806877 + MTA_Mm LTR MaLR 1 396 0 3 640 277 182 55 0 chr9 7269583 7269638 -116806534 + B1F SINE Alu 74 131 -18 3 640 277 292 41 20 chr9 7270697 7270795 -116805377 + B1F SINE Alu 35 134 -15 3 640 346 209 110 56 chr9 7271834 7271988 -116804184 + RLTR13D3 LTR ERVK 981 1114 0 3 640 21 36 0 0 chr9 7273437 7273465 -116802707 + AT_rich Low_complexity Low_complexity 1 28 0 3 640 770 186 47 52 chr9 7273631 7273824 -116802348 - B2_Mm2 SINE B2 -3 192 1 3 640 246 62 0 0 chr9 7274811 7274843 -116801329 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 3 640 1075 90 28 0 chr9 7274879 7275023 -116801149 - B1_Mus1 SINE Alu 0 148 1 3 640 278 239 278 52 chr9 7275344 7275357 -116800815 + ID_B1 SINE B4 78 218 -6 3 640 412 287 29 10 chr9 7275357 7275459 -116800713 + PB1D10 SINE Alu 8 111 -6 3 640 276 30 0 0 chr9 7275481 7275514 -116800658 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 3 640 360 208 83 0 chr9 7275975 7276047 -116800125 - ID4_ SINE ID -2 81 4 3 640 255 246 16 47 chr9 7279172 7279236 -116796936 + ID4 SINE ID 22 83 0 3 640 474 309 78 30 chr9 7279494 7279661 -116796511 - B4A SINE B4 -117 175 1 3 640 378 0 0 0 chr9 7280598 7280640 -116795532 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 640 28 0 0 0 chr9 7282414 7282442 -116793730 + AT_rich Low_complexity Low_complexity 1 28 0 3 640 25072 114 11 85 chr9 7283381 7290262 -116785910 - L1_Mus2 LINE L1 0 6566 238 3 640 477 248 0 10 chr9 7290263 7290365 -116785807 + RLTR20B1 LTR ERVK 463 563 0 3 640 243 170 0 0 chr9 7291395 7291442 -116784730 + CT-rich Low_complexity Low_complexity 6 52 0 3 640 345 323 13 145 chr9 7291694 7291723 -116784449 - MTEb LTR MaLR -172 207 10 3 640 367 296 91 50 chr9 7291723 7291922 -116784250 - MLT2B3 LTR ERVL -338 216 10 3 640 675 305 78 8 chr9 7291967 7292225 -116783947 + B4A SINE B4 2 277 -15 3 640 455 242 106 0 chr9 7292984 7293116 -116783056 - B1_Mur2 SINE Alu -2 147 2 3 640 1175 195 67 14 chr9 7293192 7293631 -116782541 - Lx5 LINE L1 -1409 6051 5305 3 640 2180 220 75 91 chr9 7293634 7294263 -116781909 + RMER20B LTR ERVK 9 627 0 3 640 1248 157 96 0 chr9 7294263 7294544 -116781628 - Lx5 LINE L1 -567 5313 5006 3 640 36956 52 13 16 chr9 7294573 7301110 -116775062 - L1Md_T LINE L1 0 6582 99 3 640 408 213 16 39 chr9 7301115 7301242 -116774930 - RMER1B Other Other 0 1066 943 3 640 9509 137 58 104 chr9 7301246 7303302 -116772870 - ORR1A4-int LTR MaLR -1 1962 1 3 640 1741 140 70 16 chr9 7303302 7303614 -116772558 - ORR1A4 LTR MaLR 0 329 1 3 640 965 258 0 5 chr9 7303614 7303824 -116772348 - Lx5 LINE L1 -121 6929 6721 3 640 581 228 52 62 chr9 7303826 7304018 -116772154 - RNLTR23 LTR ERVK 0 642 453 3 640 461 237 0 0 chr9 7304336 7304429 -116771743 - Lx5 LINE L1 -331 6719 6627 3 640 2244 157 88 35 chr9 7304429 7304896 -116771276 + RMER16 LTR ERVK 1 533 0 3 640 1099 141 60 0 chr9 7304896 7305095 -116771077 + RMER16-int LTR ERVK 1 211 -5195 3 640 3740 49 12 26 chr9 7305095 7305598 -116770574 - LTRIS2 LTR ERV1 0 564 69 3 640 7154 117 35 12 chr9 7305612 7306802 -116769370 + RMER16-int LTR ERVK 208 1425 -3981 3 640 1128 144 9 50 chr9 7306863 7307083 -116769089 + RMER16-int LTR ERVK 1327 1537 -3869 3 640 3381 196 38 94 chr9 7307316 7308372 -116767800 + RMER16-int LTR ERVK 2212 3208 -4198 3 640 19571 83 40 24 chr9 7308368 7311358 -116764814 + RMER16-int LTR ERVK 2357 5394 -12 3 640 3743 119 44 6 chr9 7311358 7311992 -116764180 - L1_Mm LINE L1 -768 5115 4458 3 640 36 40 0 0 chr9 7312013 7312063 -116764109 + AT_rich Low_complexity Low_complexity 1 50 0 3 640 16520 174 68 24 chr9 7312063 7313148 -116763024 - L1_Mur3 LINE L1 -552 5325 4192 3 640 1234 54 0 12 chr9 7313148 7313317 -116762855 + (CA)n Simple_repeat Simple_repeat 2 168 0 3 640 16520 174 68 24 chr9 7313317 7314612 -116761560 - L1_Mur3 LINE L1 -1686 4191 2891 3 640 536 0 0 15 chr9 7314612 7314677 -116761495 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 3 640 16520 181 62 44 chr9 7314677 7316619 -116759553 - L1_Mur3 LINE L1 -2987 2890 876 3 640 282 237 70 30 chr9 7317226 7317326 -116758846 + MLT1A1 LTR MaLR 305 408 0 4 640 240 370 28 9 chr9 7317777 7317886 -116758286 - MIR SINE MIR -121 141 31 4 640 366 230 105 48 chr9 7318669 7318830 -116757342 - RLTR13D3 LTR ERVK 0 1114 850 4 640 225 211 0 0 chr9 7319086 7319124 -116757048 - B2_Mm2 SINE B2 -157 38 1 4 640 479 121 12 0 chr9 7320547 7320554 -116755618 + (TCCC)n Simple_repeat Simple_repeat 2 8 0 4 640 1230 100 0 0 chr9 7320554 7320734 -116755438 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 640 479 121 12 0 chr9 7320734 7320809 -116755363 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 4 640 843 86 0 0 chr9 7320809 7320926 -116755246 + (TTTC)n Simple_repeat Simple_repeat 2 118 0 4 640 335 23 23 0 chr9 7321452 7321496 -116754676 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 640 312 299 123 7 chr9 7321542 7321680 -116754492 + RMER1C Other Other 516 669 -673 4 640 477 182 0 0 chr9 7321764 7321863 -116754309 + RMER1C Other Other 1242 1340 -2 4 640 549 0 0 0 chr9 7322209 7322270 -116753902 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 640 321 26 0 0 chr9 7322270 7322307 -116753865 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 640 988 245 66 17 chr9 7322334 7322575 -116753597 - B4A SINE B4 -31 261 9 4 640 3410 179 148 28 chr9 7323330 7324766 -116751406 + L1_Mur3 LINE L1 297 1904 -3976 4 640 1861 185 83 8 chr9 7324768 7325165 -116751007 + Lx5 LINE L1 6624 7050 0 4 640 343 109 0 15 chr9 7325196 7325261 -116750911 + L1_Mur3 LINE L1 1884 1947 -3933 4 640 18093 81 20 2 chr9 7325273 7327927 -116748245 - L1_Mur1 LINE L1 0 5886 3185 4 640 2756 248 70 8 chr9 7327966 7328761 -116747411 + Lx7 LINE L1 5900 6744 -952 4 640 2293 148 5 45 chr9 7328782 7329178 -116746994 + RLTR14 LTR ERV1 3 382 0 4 640 306 0 0 0 chr9 7329180 7329214 -116746958 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 4 640 829 270 112 4 chr9 7329218 7329467 -116746705 + Lx6 LINE L1 7003 7278 -182 4 640 586 283 92 15 chr9 7329485 7329758 -116746414 + L1MA5 LINE L1 5995 6288 -12 4 640 225 0 0 0 chr9 7329866 7329891 -116746281 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 640 240 276 93 31 chr9 7330768 7330865 -116745307 - B1F SINE Alu -21 128 26 4 640 432 322 0 0 chr9 7331344 7331462 -116744710 + B1F SINE Alu 29 146 -3 4 640 424 264 200 3 chr9 7331573 7331725 -116744447 - ID_B1 SINE B4 -104 188 4 4 640 295 296 12 0 chr9 7332893 7332974 -116743198 - ID4_ SINE ID 0 83 2 4 640 25 31 0 0 chr9 7333495 7333527 -116742645 + AT_rich Low_complexity Low_complexity 1 32 0 4 640 261 57 0 0 chr9 7333540 7333575 -116742597 + (ATTG)n Simple_repeat Simple_repeat 3 37 0 4 640 268 220 0 0 chr9 7333592 7333651 -116742521 - L1MA9 LINE L1 -64 6248 6190 4 640 975 120 0 0 chr9 7333657 7333815 -116742357 + (TCCC)n Simple_repeat Simple_repeat 4 161 0 4 640 854 132 8 0 chr9 7333838 7333967 -116742205 - B1_Mur4 SINE Alu -20 130 1 4 640 222 171 0 0 chr9 7334112 7334153 -116742019 + T-rich Low_complexity Low_complexity 1 41 0 4 640 2929 61 3 3 chr9 7334157 7334535 -116741637 - L1_Mus2 LINE L1 -4 6562 6185 4 640 3790 53 20 2 chr9 7334535 7335042 -116741130 + L1_Mus2 LINE L1 5663 6178 -388 4 640 987 255 113 20 chr9 7336342 7336786 -116739386 - L1MA9 LINE L1 -195 6117 5633 4 640 236 306 27 14 chr9 7337650 7337723 -116738449 + ID4_ SINE ID 1 74 -9 4 641 307 263 10 20 chr9 7342168 7342269 -116733903 + CT-rich Low_complexity Low_complexity 3 102 0 4 641 389 232 0 0 chr9 7342284 7342353 -116733819 - ID4 SINE ID -14 69 1 4 641 1041 90 0 0 chr9 7342503 7342636 -116733536 + B1_Mus2 SINE Alu 2 134 -13 4 641 265 24 48 0 chr9 7342636 7342678 -116733494 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 641 211 290 55 55 chr9 7343203 7343276 -116732896 - MIRb SINE MIR -34 234 162 4 641 450 0 0 0 chr9 7343454 7343504 -116732668 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 641 342 0 0 0 chr9 7344863 7344901 -116731271 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 641 537 282 124 9 chr9 7344990 7345208 -116730964 - Lx9 LINE L1 -321 7323 7081 4 641 250 316 56 49 chr9 7345223 7345366 -116730806 - MIRb SINE MIR -34 234 91 4 641 478 281 54 7 chr9 7346368 7346515 -116729657 - RSINE1 SINE B4 -10 155 2 4 641 274 348 48 109 chr9 7348040 7348194 -116727978 - ID_B1 SINE B4 -3 221 7 4 641 282 233 27 27 chr9 7348194 7348269 -116727903 - ID4 SINE ID -2 81 7 4 641 843 286 25 8 chr9 7348979 7349219 -116726953 + B4A SINE B4 48 291 -1 4 641 321 186 0 0 chr9 7349220 7349290 -116726882 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 641 306 94 0 0 chr9 7350183 7350202 -116725970 + (A)n Simple_repeat Simple_repeat 1 19 0 4 641 1201 55 7 0 chr9 7350202 7350348 -116725824 + B1_Mm SINE Alu 1 147 0 4 641 306 94 0 0 chr9 7350348 7350381 -116725791 + (A)n Simple_repeat Simple_repeat 1 33 0 4 641 25 65 0 0 chr9 7351419 7351465 -116724707 + AT_rich Low_complexity Low_complexity 1 46 0 4 641 228 220 0 57 chr9 7351465 7351518 -116724654 - B1F SINE Alu -37 112 63 4 641 233 139 0 0 chr9 7351486 7351522 -116724650 - PB1D10 SINE Alu -26 91 56 4 641 282 56 0 0 chr9 7351534 7351570 -116724602 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 4 641 714 263 45 6 chr9 7352200 7352376 -116723796 + B3A SINE B2 2 184 -14 4 641 679 311 67 14 chr9 7352413 7352830 -116723342 + L1MA6 LINE L1 5855 6293 -7 4 641 527 304 94 36 chr9 7353875 7354151 -116722021 + B4A SINE B4 1 292 0 4 641 531 78 0 0 chr9 7354166 7354243 -116721929 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 641 227 262 29 58 chr9 7355122 7355191 -116720981 + tRNA-Ala-GCA tRNA tRNA 2 68 -7 4 641 1564 79 32 0 chr9 7356102 7356318 -116719854 - L1_Mus2 LINE L1 0 6566 6344 4 641 4828 55 1 0 chr9 7356318 7357130 -116719042 - L1_Mus2 LINE L1 -374 6192 5380 4 641 285 29 0 0 chr9 7358711 7358745 -116717427 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 641 730 270 69 0 chr9 7358745 7358919 -116717253 - B3 SINE B2 -30 186 1 4 641 991 244 68 4 chr9 7359722 7359985 -116716187 + ERVL-int LTR ERVL 4333 4612 -1145 4 641 231 175 0 0 chr9 7360002 7360042 -116716130 - L1M4 LINE L1 -6399 143 104 4 641 214 379 15 0 chr9 7360053 7360119 -116716053 - ID4_ SINE ID -8 75 9 4 641 1140 157 0 0 chr9 7360673 7360845 -116715327 + B2_Mm2 SINE B2 1 172 -23 4 641 801 254 34 29 chr9 7361242 7361449 -116714723 - B3 SINE B2 0 216 9 4 641 425 306 0 0 chr9 7361765 7361876 -116714296 - PB1D7 SINE Alu -8 112 2 4 641 2451 109 93 3 chr9 7361900 7362285 -116713887 - RLTR9B2 LTR ERVK 0 420 1 4 641 373 127 41 27 chr9 7362286 7362359 -116713813 - ETnERV2-int LTR ERVK -2 7404 7331 4 641 8283 141 12 17 chr9 7362576 7364093 -116712079 - ETnERV2-int LTR ERVK -1179 6227 4961 4 641 6044 160 50 26 chr9 7364093 7366049 -116710123 - ETnERV2-int LTR ERVK -3312 4094 1919 4 641 3443 86 31 13 chr9 7366074 7366628 -116709544 - ETnERV2-int LTR ERVK -5321 2085 1522 4 641 622 204 20 39 chr9 7366629 7366782 -116709390 + RMER1C Other Other 1191 1340 -2 4 641 23 0 0 0 chr9 7367697 7367720 -116708452 + AT_rich Low_complexity Low_complexity 1 23 0 4 641 22 0 0 0 chr9 7368142 7368164 -116708008 + AT_rich Low_complexity Low_complexity 1 22 0 4 641 24 53 0 0 chr9 7368344 7368382 -116707790 + AT_rich Low_complexity Low_complexity 1 38 0 4 641 470 17 0 17 chr9 7368420 7368480 -116707692 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 641 334 294 150 8 chr9 7369510 7369637 -116706535 - B1F SINE Alu -2 147 3 4 641 2151 117 12 26 chr9 7371138 7371480 -116704692 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 641 6414 46 12 18 chr9 7371482 7372337 -116703835 - IAPEz-int LTR ERVK -2 6479 5630 4 641 12177 53 90 17 chr9 7372323 7375185 -116700987 - IAPEz-int LTR ERVK -3405 3076 8 4 641 2151 117 12 26 chr9 7375185 7375527 -116700645 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 641 235 271 66 66 chr9 7375674 7375765 -116700407 - MER63D DNA AcHobo -950 111 21 4 641 319 312 122 53 chr9 7375945 7376249 -116699923 + L1_Rod LINE L1 23 347 -6825 4 641 539 158 56 21 chr9 7376250 7376392 -116699780 + L1_Rod LINE L1 1666 1812 -4035 4 641 2578 210 160 14 chr9 7376530 7377299 -116698873 + L1_Rod LINE L1 23 903 -6269 4 641 33002 65 2 2 chr9 7377321 7382503 -116693669 + L1Md_F3 LINE L1 446 5586 -297 4 641 7956 42 4 9 chr9 7382503 7383503 -116692669 + L1Md_F3 LINE L1 5587 6584 0 4 641 7956 42 4 9 chr9 7383503 7383515 -116692657 + L1Md_F3 LINE L1 6562 6570 -14 4 641 405 172 13 52 chr9 7384404 7384557 -116691615 + GA-rich Low_complexity Low_complexity 4 150 0 4 641 726 325 60 6 chr9 7385776 7386095 -116690077 - Lx6 LINE L1 -26 7434 7099 4 641 246 167 0 0 chr9 7387141 7387183 -116688989 + B3A SINE B2 1 42 -156 4 641 345 24 0 0 chr9 7387251 7387293 -116688879 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 641 2958 38 0 0 chr9 7387375 7387721 -116688451 - ORR1A0 LTR MaLR 0 346 1 4 641 292 230 0 13 chr9 7388346 7388442 -116687730 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 641 255 332 200 29 chr9 7388444 7388689 -116687483 - B4 SINE B4 -4 288 2 4 641 267 31 0 0 chr9 7389175 7389207 -116686965 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 641 2563 123 10 26 chr9 7389738 7390154 -116686018 - RLTR9E LTR ERVK 0 409 1 4 641 413 147 0 85 chr9 7390154 7390236 -116685936 - ETnERV2-int LTR ERVK -1 7405 7331 4 641 2478 121 45 20 chr9 7390464 7391040 -116685132 - ETnERV2-int LTR ERVK -984 6422 5887 4 641 14338 112 43 2 chr9 7391034 7392599 -116683573 - ETnERV2-int LTR ERVK -1865 5541 3932 4 641 456 19 0 0 chr9 7392599 7392652 -116683520 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 641 14338 112 43 2 chr9 7392652 7393105 -116683067 - ETnERV2-int LTR ERVK -3475 3931 3441 4 641 1694 188 211 27 chr9 7393121 7393594 -116682578 - ETnERV2-int LTR ERVK -4419 2987 2428 4 641 667 203 67 11 chr9 7393591 7393770 -116682402 - ETnERV2-int LTR ERVK -5321 2085 1897 4 641 8343 62 10 4 chr9 7393908 7396215 -116679957 - L1Md_F2 LINE L1 -1 6581 5286 4 641 1119 170 48 13 chr9 7396215 7396442 -116679730 - ETnERV2-int LTR ERVK -3893 951 717 4 641 299 143 35 18 chr9 7396936 7396993 -116679179 - RLTR45-int LTR ERVK -5096 2148 2091 4 641 861 206 15 92 chr9 7396988 7397315 -116678857 - ETnERV2-int LTR ERVK -2942 372 2 4 641 2415 129 32 32 chr9 7397317 7397726 -116678446 - RLTR9E LTR ERVK 0 409 1 4 641 369 238 61 94 chr9 7397910 7398091 -116678081 - Lx7 LINE L1 -5 7691 7517 4 641 4843 221 38 12 chr9 7398061 7398095 -116678077 - Lx7 LINE L1 -314 7382 7346 4 641 339 65 0 0 chr9 7398095 7398141 -116678031 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 641 4843 221 38 12 chr9 7398141 7399146 -116677026 - Lx7 LINE L1 -351 7345 6317 4 641 276 200 17 0 chr9 7399149 7399209 -116676963 - ORR1B1 LTR MaLR 0 394 334 4 641 2173 178 72 7 chr9 7399261 7399708 -116676464 - ORR1B1-int LTR MaLR 0 1509 1034 4 641 1479 199 43 43 chr9 7399710 7400062 -116676110 + ORR1B1 LTR MaLR 35 386 -8 4 641 4885 169 55 71 chr9 7400068 7400748 -116675424 - ORR1A3-int LTR MaLR -391 1572 857 4 641 504 250 54 39 chr9 7400748 7400877 -116675295 - B1_Mur3 SINE Alu -16 133 3 5 641 4885 169 55 71 chr9 7400877 7401336 -116674836 - ORR1A3-int LTR MaLR -1107 856 451 4 641 3104 81 5 10 chr9 7401336 7401734 -116674438 + MTA_Mm LTR MaLR 1 396 0 5 641 8200 87 10 1 chr9 7401870 7402123 -116674049 + L1VL1 LINE L1 19 271 -6151 5 641 1090 58 167 0 chr9 7402123 7402279 -116673893 - L1Md_A LINE L1 0 6582 6401 5 641 8200 96 9 1 chr9 7402279 7403420 -116672752 + L1VL1 LINE L1 272 1426 -2272 5 641 22488 84 3 8 chr9 7403404 7407036 -116669136 + L1Md_F2 LINE L1 589 4197 -1686 5 641 2311 112 215 29 chr9 7407144 7407624 -116668548 + RLTR6_Mm LTR ERV1 37 605 -49 5 641 68017 14 15 2 chr9 7407624 7415296 -116660876 + RLTR6-int LTR ERV1 1 7778 0 5 641 2225 114 224 28 chr9 7415405 7415864 -116660308 + RLTR6_Mm LTR ERV1 37 585 -69 5 641 10918 68 1 1 chr9 7415865 7417258 -116658914 + L1Md_F2 LINE L1 4195 5586 -297 5 641 8184 71 6 0 chr9 7417258 7418248 -116657924 + L1Md_F2 LINE L1 5587 6582 0 5 641 12559 101 5 15 chr9 7418253 7420108 -116656064 + L1_Mus1 LINE L1 1615 3451 -2432 5 641 12115 98 13 1 chr9 7420079 7422414 -116653758 + L1_Mus1 LINE L1 4202 6566 -1 5 641 1075 233 9 14 chr9 7422661 7422874 -116653298 - B3 SINE B2 -3 213 2 5 641 570 15 0 0 chr9 7423215 7423282 -116652890 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 641 1397 233 72 37 chr9 7423929 7424303 -116651869 - MTD LTR MaLR -15 404 18 5 641 605 299 48 14 chr9 7424494 7424704 -116651468 - ID_B1 SINE B4 -5 219 3 5 641 2022 99 31 22 chr9 7424889 7425208 -116650964 - RLTRETN_Mm LTR ERVK 0 322 1 5 641 19153 106 22 17 chr9 7425208 7428674 -116647498 - ETnERV2-int LTR ERVK -107 7299 3219 5 641 1388 62 22 0 chr9 7428768 7428947 -116647225 - L1_Mus2 LINE L1 -2 6564 6382 5 641 15829 104 43 8 chr9 7429514 7431887 -116644285 - L1_Mm LINE L1 -1000 4883 2429 5 641 31019 111 7 4 chr9 7431886 7437249 -116638923 + L1_Mus1 LINE L1 1186 6566 -1 5 641 17772 73 46 4 chr9 7437295 7439976 -116636196 - L1VL4 LINE L1 -33 3526 729 5 641 630 99 0 0 chr9 7440628 7440719 -116635453 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 5 641 3367 125 28 39 chr9 7441307 7441848 -116634324 - L1VL4 LINE L1 -5558 744 210 5 641 783 32 0 0 chr9 7442095 7442189 -116633983 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 5 641 2773 222 21 93 chr9 7442217 7442927 -116633245 + RMER1B Other Other 404 1062 -4 5 641 481 287 147 0 chr9 7443734 7443863 -116632309 + RSINE1 SINE B4 4 151 -14 5 641 299 248 0 9 chr9 7445122 7445228 -116630944 + GA-rich Low_complexity Low_complexity 1 105 0 5 641 359 290 20 20 chr9 7446638 7446740 -116629432 + PB1D10 SINE Alu 2 103 -14 5 641 674 72 10 0 chr9 7446745 7446842 -116629330 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 5 641 3296 65 0 22 chr9 7447721 7448133 -116628039 - L1_Mus1 LINE L1 0 6567 6165 5 641 918 207 73 14 chr9 7448275 7448495 -116627677 + Lx6 LINE L1 7228 7460 0 5 641 348 24 0 0 chr9 7450820 7450861 -116625311 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 641 711 286 14 29 chr9 7452598 7452643 -116623529 - B3 SINE B2 -8 208 167 5 641 189 0 0 0 chr9 7452643 7452664 -116623508 + (TC)n Simple_repeat Simple_repeat 2 22 0 5 641 285 29 0 0 chr9 7452664 7452697 -116623475 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 641 711 286 14 29 chr9 7452697 7452859 -116623313 - B3 SINE B2 -50 166 4 5 641 553 288 22 38 chr9 7452889 7453073 -116623099 - B3A SINE B2 -15 183 3 5 641 568 212 6 76 chr9 7453282 7453440 -116622732 - RMER10B LTR ERVL -48 350 204 5 641 3701 60 26 7 chr9 7453956 7454409 -116621763 - L1Md_F2 LINE L1 -4 6578 6117 5 641 592 90 0 0 chr9 7454409 7454487 -116621685 - L1Md_F2 LINE L1 -753 5831 5754 5 641 180 77 0 0 chr9 7454551 7454577 -116621595 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 641 1141 96 7 7 chr9 7454620 7454767 -116621405 - B1_Mus1 SINE Alu -1 147 1 5 641 250 242 15 15 chr9 7455397 7455464 -116620708 - ID4 SINE ID -9 74 8 5 641 243 0 0 0 chr9 7455500 7455527 -116620645 + (T)n Simple_repeat Simple_repeat 1 27 0 5 641 658 167 217 0 chr9 7456441 7456561 -116619611 + B1_Mur2 SINE Alu 3 148 -1 5 641 544 156 18 0 chr9 7456563 7456672 -116619500 + GA-rich Low_complexity Low_complexity 3 113 0 5 641 438 53 0 0 chr9 7456717 7456774 -116619398 + (CATA)n Simple_repeat Simple_repeat 3 59 0 5 641 333 167 0 0 chr9 7456776 7456854 -116619318 + GA-rich Low_complexity Low_complexity 3 80 0 5 641 705 24 0 0 chr9 7456862 7456945 -116619227 + (GGA)n Simple_repeat Simple_repeat 3 85 0 5 641 1125 74 7 0 chr9 7456945 7457080 -116619092 + B1_Mus1 SINE Alu 1 136 -12 5 641 279 0 0 0 chr9 7457081 7457112 -116619060 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 641 265 357 40 0 chr9 7457271 7457397 -116618775 - MIRm SINE MIR 0 276 146 5 641 24 0 0 0 chr9 7457946 7457970 -116618202 + AT_rich Low_complexity Low_complexity 1 24 0 5 641 1300 27 0 20 chr9 7458203 7458339 -116617833 + B1_Mm SINE Alu 2 137 -10 5 641 243 0 0 0 chr9 7458339 7458366 -116617806 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 641 1300 27 0 20 chr9 7458366 7458378 -116617794 + B1_Mm SINE Alu 138 147 0 5 641 195 139 0 0 chr9 7458434 7458470 -116617702 + (TATG)n Simple_repeat Simple_repeat 1 36 0 5 641 247 200 18 18 chr9 7458550 7458606 -116617566 + ID4 SINE ID 8 63 -20 5 641 234 265 14 14 chr9 7458606 7458619 -116617553 + tRNA-Ala-GCY_ tRNA tRNA 2 70 -5 5 641 227 315 35 43 chr9 7459065 7459181 -116616991 - ID_B1 SINE B4 -20 204 90 5 641 373 279 0 16 chr9 7459080 7459190 -116616982 - B1_Mur4 SINE Alu -14 106 5 5 641 7491 219 47 18 chr9 7459445 7460141 -116616031 + Lx7 LINE L1 5588 6313 -1383 5 641 1714 207 42 58 chr9 7460141 7460541 -116615631 + ORR1B1 LTR MaLR 1 394 0 5 641 7491 219 47 18 chr9 7460541 7461549 -116614623 + Lx7 LINE L1 6314 7345 -351 5 641 1077 122 0 0 chr9 7461549 7461729 -116614443 + (TG)n Simple_repeat Simple_repeat 1 182 -249 5 641 1077 122 0 0 chr9 7461737 7461980 -116614192 + (TG)n Simple_repeat Simple_repeat 183 431 0 5 641 385 284 78 24 chr9 7461994 7462160 -116614012 + Lx7 LINE L1 7511 7685 -11 5 641 372 43 0 0 chr9 7462894 7462940 -116613232 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 641 516 32 0 0 chr9 7462940 7463001 -116613171 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 641 326 309 192 20 chr9 7463453 7463698 -116612474 + B4 SINE B4 2 288 -4 5 641 378 197 16 8 chr9 7463721 7463844 -116612328 + (CA)n Simple_repeat Simple_repeat 1 124 0 5 641 474 18 0 0 chr9 7464671 7464726 -116611446 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 641 255 169 6 0 chr9 7464787 7464836 -116611336 - B2_Mm2 SINE B2 -147 51 1 5 641 1038 288 52 25 chr9 7465869 7466196 -116609976 + Lx6 LINE L1 7099 7434 -26 5 641 339 316 30 10 chr9 7466233 7466332 -116609840 + RSINE1 SINE B4 48 148 -17 5 641 656 24 12 0 chr9 7467418 7467500 -116608672 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 641 614 13 13 0 chr9 7467792 7467867 -116608305 + (TATG)n Simple_repeat Simple_repeat 2 77 0 5 641 461 286 86 0 chr9 7468400 7468540 -116607632 + ID_B1 SINE B4 2 153 -71 5 641 437 213 21 11 chr9 7468546 7468641 -116607531 + B3 SINE B2 5 100 -116 5 641 7152 201 143 24 chr9 7468644 7470818 -116605354 - Lx9 LINE L1 -21 7623 5132 5 80 1994 261 44 60 chr9 7470795 7471345 -116604827 - Lx6 LINE L1 -96 7364 6824 5 642 333 0 0 0 chr9 7471356 7471393 -116604779 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 642 567 0 0 0 chr9 7471393 7471455 -116604717 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 642 1849 198 37 3 chr9 7471461 7471815 -116604357 - Lx6 LINE L1 -737 6723 6358 5 642 2783 247 26 35 chr9 7471823 7472287 -116603885 - Lx9 LINE L1 -1417 4430 3977 5 642 417 123 0 0 chr9 7472287 7472352 -116603820 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 642 2783 247 26 35 chr9 7472352 7472664 -116603508 - Lx9 LINE L1 -1871 3976 3661 5 642 441 0 0 0 chr9 7472664 7472713 -116603459 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 642 1500 204 110 7 chr9 7472713 7473122 -116603050 - Lx9 LINE L1 -3731 2116 1666 5 642 264 314 65 14 chr9 7473123 7473262 -116602910 - L1_Rod LINE L1 -6825 347 202 5 642 228 271 66 66 chr9 7473581 7473672 -116602500 + MER63D DNA AcHobo 21 111 -950 5 642 479 266 147 8 chr9 7474939 7475068 -116601104 + B1F SINE Alu 1 147 -2 5 642 247 312 0 0 chr9 7477637 7477730 -116598442 + L1VL1 LINE L1 17 109 -6313 5 642 387 228 22 0 chr9 7477719 7477811 -116598361 + L1Md_F3 LINE L1 332 425 -6191 5 642 270 139 0 0 chr9 7477809 7477852 -116598320 + L1Md_F3 LINE L1 587 629 -5987 5 642 35754 42 7 6 chr9 7477850 7482522 -116593650 + L1Md_F3 LINE L1 928 5586 -297 5 642 8688 35 11 2 chr9 7482522 7483591 -116592581 + L1Md_F3 LINE L1 5587 6584 0 5 642 442 305 89 30 chr9 7484061 7484230 -116591942 - B4A SINE B4 -59 233 55 5 642 486 246 16 48 chr9 7484287 7484475 -116591697 - Lx6 LINE L1 -26 7434 7253 5 642 4060 64 0 32 chr9 7484475 7484973 -116591199 + LTRIS_Mm LTR ERV1 1 482 0 5 642 1985 93 11 0 chr9 7484973 7485243 -116590929 + MuRRS-int LTR ERV1 1 273 -4417 5 642 21803 19 0 0 chr9 7485255 7487734 -116588438 + L1Md_T LINE L1 3108 5586 -297 5 642 9548 5 0 3 chr9 7487734 7488733 -116587439 + L1Md_T LINE L1 5587 6582 0 5 642 8004 78 25 15 chr9 7488775 7489877 -116586295 + MuRRS-int LTR ERV1 504 1695 -2995 5 642 16741 65 4 30 chr9 7489887 7492128 -116584044 + MuRRS-int LTR ERV1 1650 4176 -3380 5 642 4694 38 4 0 chr9 7492128 7492655 -116583517 + L1Md_T LINE L1 6054 6582 0 5 642 7207 165 11 19 chr9 7492655 7494264 -116581908 + MuRRS-int LTR ERV1 3747 5554 -2002 5 642 1630 67 0 0 chr9 7494264 7494473 -116581699 + LTRIS_Mm LTR ERV1 1 209 -273 5 642 2933 25 3 0 chr9 7494473 7494794 -116581378 + RLTRETN_Mm LTR ERVK 1 322 0 5 642 40192 31 9 8 chr9 7494794 7499516 -116576656 + MMETn-int LTR ERVK 1 4727 -117 5 642 418 279 6 19 chr9 7499521 7499682 -116576490 - Lx6 LINE L1 -49 7411 7253 5 642 2269 63 0 50 chr9 7499682 7500000 -116576172 + LTRIS_Mm LTR ERV1 1 302 -180 5 642 1311 63 23 0 chr9 7500002 7500176 -116575996 + LTRIS_Mm LTR ERV1 305 482 0 1 642 945 261 73 36 chr9 7500196 7500554 -116575618 - Lx5 LINE L1 -196 6854 6484 2 642 641 273 120 4 chr9 7500563 7500890 -116575282 - Lx5 LINE L1 -695 6355 5971 2 642 1149 52 0 0 chr9 7504573 7504709 -116571463 + B1_Mm SINE Alu 2 137 -10 3 642 217 0 61 0 chr9 7504709 7504742 -116571430 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 642 264 59 0 0 chr9 7505031 7505065 -116571107 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 5 642 252 0 0 0 chr9 7505149 7505177 -116570995 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 642 342 0 0 0 chr9 7505177 7505214 -116570958 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 642 372 264 46 109 chr9 7505230 7505404 -116570768 - RSINE1 SINE B4 -1 164 2 8 642 33 0 0 0 chr9 7505750 7505783 -116570389 + AT_rich Low_complexity Low_complexity 1 33 0 9 642 808 199 0 0 chr9 7506941 7507082 -116569090 - B1_Mur1 SINE Alu -7 142 2 1 642 4076 27 10 0 chr9 7508445 7508924 -116567248 - L1Md_F3 LINE L1 0 6584 6101 1 642 307 353 19 18 chr9 7509573 7509704 -116566468 + MIRb SINE MIR 1 139 -129 1 642 2929 117 38 13 chr9 7510767 7511242 -116564930 - RLTR31B_Mm LTR ERVK -70 487 1 1 642 24017 88 32 26 chr9 7511685 7516740 -116559432 + Lx3_Mus LINE L1 1920 7009 0 1 642 1533 174 136 22 chr9 7516776 7517232 -116558940 - RMER3D-int LTR ERVK -794 2048 1541 1 642 869 187 36 42 chr9 7517261 7517577 -116558595 - RMER3D-int LTR ERVK -1299 1543 1382 1 642 1909 164 1 22 chr9 7517590 7517993 -116558179 - RMER3D-int LTR ERVK -1456 1386 1014 1 642 601 243 67 53 chr9 7518046 7518329 -116557843 - RMER3D-int LTR ERVK -2370 472 186 1 642 286 233 0 0 chr9 7518396 7518456 -116557716 - RMER3D-int LTR ERVK -2782 60 1 1 642 502 309 146 18 chr9 7518792 7519293 -116556879 + L1MA5 LINE L1 5363 5927 -373 1 642 185 204 29 21 chr9 7519341 7519481 -116556691 + (TG)n Simple_repeat Simple_repeat 2 142 0 1 642 205 194 38 31 chr9 7519546 7519706 -116556466 + (TG)n Simple_repeat Simple_repeat 1 161 0 1 642 279 0 0 0 chr9 7519770 7519801 -116556371 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 642 183 80 0 0 chr9 7519803 7519828 -116556344 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 642 5648 59 0 4 chr9 7519849 7520565 -116555607 + L1Md_F2 LINE L1 5858 6570 -12 2 642 34631 5 0 0 chr9 7520843 7524956 -116551216 + L1Md_A LINE L1 1474 5586 -297 2 642 9068 2 0 0 chr9 7524956 7525952 -116550220 + L1Md_A LINE L1 5587 6582 0 2 642 260 337 31 0 chr9 7525963 7526061 -116550111 + PB1D10 SINE Alu 9 109 -8 2 642 3963 192 56 21 chr9 7527626 7528546 -116547626 + Lx5 LINE L1 5961 6987 -63 2 642 318 324 112 56 chr9 7528568 7528728 -116547444 - MLT1E1A LTR MaLR -46 634 466 2 642 789 90 18 0 chr9 7528938 7529049 -116547123 + RLTR15 LTR ERVK 1 113 -246 2 642 394 256 7 101 chr9 7529100 7529239 -116546933 + B1_Mur4 SINE Alu 19 144 -6 2 642 10312 87 36 12 chr9 7529376 7530944 -116545228 + RMER16-int LTR ERVK 2871 4475 -931 2 642 818 263 39 31 chr9 7530951 7530964 -116545208 - L1Md_F LINE L1 -5359 1182 1170 3 642 5104 87 14 3 chr9 7530964 7531668 -116544504 - L1Md_F2 LINE L1 0 6582 5871 3 642 3674 101 87 1 chr9 7531668 7532291 -116543881 - L1Md_F LINE L1 -5372 1169 494 3 642 5734 80 11 25 chr9 7532292 7533136 -116543036 + RMER16-int LTR ERVK 4466 5297 -109 3 642 393 173 0 0 chr9 7533216 7533291 -116542881 + RMER16-int LTR ERVK 5330 5404 -2 3 642 1869 184 94 45 chr9 7533292 7533719 -116542453 + RMER16 LTR ERVK 2 449 -84 3 642 1937 252 53 53 chr9 7533777 7534527 -116541645 + MYSERV16_I-int LTR ERVK 6 1358 -1484 3 642 8538 115 18 7 chr9 7534555 7535351 -116540821 - Lx3B LINE L1 -4 6969 6178 3 642 246 32 0 0 chr9 7535351 7535382 -116540790 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 642 21762 115 61 10 chr9 7535382 7539495 -116536677 - Lx3B LINE L1 -796 6177 1834 3 642 2351 219 72 60 chr9 7539499 7540426 -116535746 - L1Md_F LINE L1 -5484 1157 232 3 642 1584 214 5 50 chr9 7540442 7540880 -116535292 + MYSERV6-int LTR ERVK 7981 8398 -561 3 642 1618 206 19 16 chr9 7540920 7541345 -116534827 + MYSERV-int LTR ERVK 6123 6548 -2 3 642 1719 148 103 12 chr9 7541346 7541675 -116534497 + RLTR15 LTR ERVK 1 359 0 3 642 401 312 56 41 chr9 7541896 7542093 -116534079 - RMER10A LTR ERVL -25 417 218 3 642 483 90 44 11 chr9 7542185 7542275 -116533897 + (GGGAA)n Simple_repeat Simple_repeat 4 96 0 4 642 428 342 75 62 chr9 7542392 7542541 -116533631 - MER5C DNA MER1_type 0 313 162 4 642 746 285 28 9 chr9 7542541 7542757 -116533415 - ID_B1 SINE B4 -3 221 2 4 642 428 342 75 62 chr9 7542757 7542915 -116533257 - MER5C DNA MER1_type -152 161 2 4 642 180 250 107 40 chr9 7543615 7543690 -116532482 - L2b LINE L2 -235 3140 3061 4 642 240 184 0 0 chr9 7543996 7544034 -116532138 + RLTR13D3 LTR ERVK 1 38 -1076 4 642 215 158 0 0 chr9 7544490 7544528 -116531644 + B2_Mm2 SINE B2 1 38 -157 4 642 379 193 53 17 chr9 7544764 7544883 -116531289 + RLTR13D3 LTR ERVK 981 1072 -42 4 642 339 255 45 45 chr9 7544919 7545030 -116531142 + PB1D10 SINE Alu 6 116 -1 4 642 424 299 75 82 chr9 7545034 7545326 -116530846 + B4 SINE B4 3 292 0 4 642 230 0 33 0 chr9 7545934 7545964 -116530208 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 4 642 6162 128 28 4 chr9 7545964 7547311 -116528861 - Lx LINE L1 -34 6620 5239 4 642 1345 166 222 17 chr9 7548318 7548378 -116527794 + ORR1B2 LTR MaLR 21 90 -277 5 642 207 0 0 0 chr9 7548378 7548401 -116527771 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 642 1345 166 222 17 chr9 7548401 7548628 -116527544 + ORR1B2 LTR MaLR 91 366 -1 5 642 259 263 105 0 chr9 7548869 7548945 -116527227 - MER73 LTR ERVL -441 203 120 5 642 385 209 372 0 chr9 7548990 7549143 -116527029 - MTD LTR MaLR -15 404 195 5 642 283 239 14 0 chr9 7549194 7549265 -116526907 - MER73 LTR ERVL -572 72 1 5 642 495 48 0 0 chr9 7549321 7549383 -116526789 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 642 817 169 0 0 chr9 7550140 7550270 -116525902 - B3 SINE B2 -86 130 1 5 642 780 209 0 0 chr9 7550747 7550876 -116525296 + B3 SINE B2 1 129 -87 5 642 3455 96 8 0 chr9 7550898 7551377 -116524795 + L1_Mus3 LINE L1 6154 6636 -2 5 642 625 261 15 113 chr9 7551424 7551670 -116524502 + ORR1D1 LTR MaLR 1 212 -155 5 642 933 276 131 21 chr9 7551896 7552225 -116523947 + MTE2b LTR MaLR 4 368 -11 5 642 7501 58 14 2 chr9 7552283 7553605 -116522567 + L1_Mus1 LINE L1 5224 6566 -1 6 642 258 243 0 26 chr9 7554479 7554555 -116521617 + GA-rich Low_complexity Low_complexity 5 78 0 6 642 7866 97 1 6 chr9 7554650 7555827 -116520345 - L1_Mm LINE L1 -300 5583 4413 6 642 3080 54 2 27 chr9 7555827 7556230 -116519942 + L1_Mus1 LINE L1 6174 6566 -1 6 642 183 139 0 0 chr9 7556277 7556313 -116519859 + (A)n Simple_repeat Simple_repeat 1 36 0 6 642 540 0 0 0 chr9 7556804 7556864 -116519308 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 642 831 265 18 23 chr9 7557837 7558057 -116518115 - B4 SINE B4 -69 223 5 6 642 406 250 109 75 chr9 7560155 7560302 -116515870 - RSINE1 SINE B4 -3 162 11 6 642 186 293 33 33 chr9 7561122 7561182 -116514990 - MIRc SINE MIR -113 155 96 6 642 265 363 9 0 chr9 7563474 7563587 -116512585 + PB1D10 SINE Alu 4 117 0 6 642 818 121 30 0 chr9 7563611 7563776 -116512396 + GA-rich Low_complexity Low_complexity 2 171 0 7 642 247 277 11 108 chr9 7563930 7564023 -116512149 + L1M5 LINE L1 5653 5736 -458 7 642 319 310 24 57 chr9 7564356 7564479 -116511693 - PB1D7 SINE Alu -1 119 1 7 642 250 227 0 0 chr9 7568576 7568620 -116507552 + ID4_ SINE ID 27 70 -13 7 642 224 116 0 65 chr9 7568633 7568679 -116507493 + A-rich Low_complexity Low_complexity 2 44 0 7 642 614 209 107 30 chr9 7568700 7568920 -116507252 + Lx2B LINE L1 6732 7000 0 7 642 3383 33 5 5 chr9 7569952 7570348 -116505824 + MTA_Mm LTR MaLR 1 396 0 7 642 21 36 0 0 chr9 7570906 7570934 -116505238 + AT_rich Low_complexity Low_complexity 1 28 0 7 642 22 35 0 0 chr9 7570981 7571010 -116505162 + AT_rich Low_complexity Low_complexity 1 29 0 7 642 414 0 0 0 chr9 7572595 7572641 -116503531 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 642 261 57 0 0 chr9 7572743 7572778 -116503394 + (A)n Simple_repeat Simple_repeat 1 35 0 8 642 636 309 34 0 chr9 7572787 7572965 -116503207 + B3 SINE B2 1 184 -32 8 642 533 203 47 8 chr9 7573027 7573156 -116503016 + MTD LTR MaLR 272 405 -14 8 642 1245 22 0 0 chr9 7574154 7574293 -116501879 - L1Md_F3 LINE L1 -822 5762 5624 8 642 5228 56 11 42 chr9 7574293 7575004 -116501168 + L1Md_F3 LINE L1 5896 6584 0 8 642 757 241 108 36 chr9 7575166 7575360 -116500812 - B3 SINE B2 -5 211 4 8 642 213 39 0 0 chr9 7576133 7576159 -116500013 + (T)n Simple_repeat Simple_repeat 1 26 0 8 642 1115 63 7 0 chr9 7576159 7576302 -116499870 - B1_Mus2 SINE Alu 0 147 4 8 642 902 268 9 0 chr9 7576520 7576740 -116499432 + ID_B1 SINE B4 3 224 0 8 642 652 248 21 0 chr9 7577065 7577206 -116498966 - B1_Mur1 SINE Alu 0 149 6 8 642 328 305 0 0 chr9 7577875 7577970 -116498202 + B4A SINE B4 196 290 -2 8 642 889 189 97 0 chr9 7578460 7578645 -116497527 + B3 SINE B2 8 210 -6 9 642 220 137 39 0 chr9 7580184 7580235 -116495937 + (CATA)n Simple_repeat Simple_repeat 4 56 0 9 642 330 208 40 40 chr9 7580404 7580479 -116495693 - ID2 SINE ID -7 76 2 9 642 251 316 35 88 chr9 7580572 7580742 -116495430 + RSINE1 SINE B4 4 164 -1 9 642 1059 189 19 14 chr9 7581458 7581667 -116494505 + B3 SINE B2 2 211 -5 9 642 460 267 0 0 chr9 7582038 7582154 -116494018 + L1Md_F LINE L1 418 533 -5986 9 642 30717 78 16 65 chr9 7582150 7587494 -116488678 + L1Md_F2 LINE L1 503 5585 -298 9 642 7193 83 23 16 chr9 7587496 7588622 -116487550 + L1Md_F2 LINE L1 5588 6582 0 9 642 216 0 0 0 chr9 7588664 7588688 -116487484 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 9 642 267 54 0 0 chr9 7589792 7589829 -116486343 + (A)n Simple_repeat Simple_repeat 1 37 0 9 642 3665 50 4 2 chr9 7589829 7590313 -116485859 + RLTR13D1 LTR ERVK 322 806 0 9 642 10623 162 36 31 chr9 7590313 7591849 -116484323 + L1_Mur3 LINE L1 1405 2988 -2892 1 642 321 109 0 0 chr9 7591849 7591904 -116484268 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 642 10623 162 36 31 chr9 7591904 7591959 -116484213 + L1_Mur3 LINE L1 2989 3050 -2830 1 642 345 47 0 0 chr9 7591959 7592002 -116484170 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 1 642 10623 162 36 31 chr9 7592002 7592643 -116483529 + L1_Mur3 LINE L1 3051 3649 -2231 1 642 948 215 44 76 chr9 7592627 7593034 -116483138 + Lx7 LINE L1 7297 7690 -6 1 642 369 0 0 0 chr9 7593442 7593483 -116482689 + (A)n Simple_repeat Simple_repeat 1 41 0 1 642 237 269 44 88 chr9 7593774 7593933 -116482239 + Lx8 LINE L1 7035 7186 -287 1 642 320 283 114 24 chr9 7594013 7594136 -116482036 + RMER15 LTR ERVL 352 485 -90 1 642 830 137 27 0 chr9 7594190 7594336 -116481836 + URR1A DNA MER1_type 77 226 0 1 642 390 243 56 50 chr9 7594193 7594353 -116481819 - CYRA11_Mm Unknown Y-chromosome -299 318 158 1 642 1156 235 135 52 chr9 7594844 7595230 -116480942 + MTD LTR MaLR 1 418 -1 1 642 303 93 0 0 chr9 7595902 7595945 -116480227 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 642 459 0 0 0 chr9 7595945 7595995 -116480177 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 642 375 296 26 9 chr9 7595995 7596111 -116480061 - MER5A DNA MER1_type -26 163 46 1 642 354 224 20 0 chr9 7596212 7596359 -116479813 + (TA)n Simple_repeat Simple_repeat 2 151 0 1 642 240 35 0 0 chr9 7596637 7596666 -116479506 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1 642 296 326 35 0 chr9 7596666 7596752 -116479420 - PB1D10 SINE Alu -8 109 21 1 642 7672 64 4 13 chr9 7598043 7599030 -116477142 - RLTR13A3 LTR ERVK 0 978 1 1 642 7579 53 14 10 chr9 7599639 7600950 -116475222 + L1_Mus1 LINE L1 5262 6567 0 1 642 649 307 16 51 chr9 7600974 7601234 -116474938 - MTEa LTR MaLR -114 265 1 1 642 346 151 27 0 chr9 7602026 7602099 -116474073 + GA-rich Low_complexity Low_complexity 1 75 0 1 80 1719 39 0 5 chr9 7602128 7602337 -116473835 - L1Md_F2 LINE L1 -14 6568 6361 1 643 240 263 0 0 chr9 7602669 7602726 -116473446 + ID_B1 SINE B4 85 141 -83 1 643 233 343 0 0 chr9 7602726 7602739 -116473433 + B1F2 SINE Alu 4 73 -76 1 643 448 304 58 37 chr9 7602766 7602957 -116473215 + B3A SINE B2 2 196 -2 1 643 813 136 127 19 chr9 7603074 7603095 -116473077 - B2_Mm2 SINE B2 -21 174 155 1 643 249 33 0 0 chr9 7603095 7603125 -116473047 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 1 643 813 136 127 19 chr9 7603125 7603260 -116472912 - B2_Mm2 SINE B2 -41 154 1 1 643 445 315 134 0 chr9 7604642 7604791 -116471381 + B3A SINE B2 7 175 -23 1 643 189 0 0 0 chr9 7604802 7604823 -116471349 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 643 423 0 0 0 chr9 7604823 7604869 -116471303 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 643 712 314 68 49 chr9 7604898 7605119 -116471053 + MER68 LTR ERVL 46 271 -292 1 643 758 11 11 0 chr9 7605119 7605210 -116470962 + (GAA)n Simple_repeat Simple_repeat 2 93 0 1 643 712 314 68 49 chr9 7605210 7605417 -116470755 + MER68 LTR ERVL 272 482 -81 1 643 234 325 36 0 chr9 7606014 7606097 -116470075 - RSINE1 SINE B4 -79 86 1 1 643 881 184 0 0 chr9 7606189 7606336 -116469836 + B1_Mus1 SINE Alu 2 148 0 1 643 358 239 11 0 chr9 7607062 7607238 -116468934 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 643 372 178 14 14 chr9 7607283 7607357 -116468815 + Lx6 LINE L1 6497 6570 -890 1 643 2580 246 52 13 chr9 7607361 7607980 -116468192 + Lx6 LINE L1 6818 7460 0 1 643 190 317 85 0 chr9 7608131 7608213 -116467959 + MIR SINE MIR 55 143 -65 1 643 221 194 14 43 chr9 7608567 7608637 -116467535 + T-rich Low_complexity Low_complexity 1 68 0 1 643 214 283 21 52 chr9 7608977 7609074 -116467098 + C-rich Low_complexity Low_complexity 4 97 0 1 643 758 283 118 4 chr9 7609517 7609762 -116466410 + MTEa LTR MaLR 17 289 -90 1 643 1073 44 58 0 chr9 7609762 7609899 -116466273 - L1_Mus3 LINE L1 -742 5896 5752 1 643 2919 33 0 3 chr9 7609899 7610237 -116465935 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 643 19557 37 32 17 chr9 7610237 7612911 -116463261 + IAPEz-int LTR ERVK 8 2751 -3730 1 643 7532 10 0 0 chr9 7612903 7613719 -116462453 + IAPEz-int LTR ERVK 3244 4059 -2422 1 643 8205 22 1 5 chr9 7613712 7614635 -116461537 + IAPEz-int LTR ERVK 5563 6481 0 1 643 2908 33 0 3 chr9 7614635 7614973 -116461199 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 643 3926 80 2 4 chr9 7614973 7615486 -116460686 - L1_Mus3 LINE L1 -126 5757 5246 1 643 5109 62 3 2 chr9 7615486 7616130 -116460042 + L1_Mus2 LINE L1 5922 6566 0 1 643 327 289 21 0 chr9 7616166 7616263 -116459909 + MTEa LTR MaLR 281 379 0 1 643 604 273 0 0 chr9 7617332 7617475 -116458697 + B1_Mur2 SINE Alu 2 144 -5 1 643 4553 93 11 0 chr9 7618290 7618904 -116457268 + Lx3A LINE L1 6359 6979 -2 1 643 21 0 0 0 chr9 7618904 7618925 -116457247 + AT_rich Low_complexity Low_complexity 1 21 0 1 643 283 231 12 25 chr9 7618978 7619058 -116457114 - RLTR28B LTR ERVL -10 514 436 1 643 346 267 162 14 chr9 7619202 7619350 -116456822 - RLTR28B LTR ERVL -295 186 17 1 643 233 374 71 14 chr9 7619415 7619556 -116456616 - MIRb SINE MIR -28 240 92 1 643 245 204 56 0 chr9 7620061 7620115 -116456057 - B1_Mur1 SINE Alu 0 149 93 1 643 500 227 126 0 chr9 7620070 7620189 -116455983 - ID_B1 SINE B4 -9 215 82 1 643 345 301 53 48 chr9 7620403 7620612 -116455560 - ID_B1 SINE B4 -14 210 1 1 643 213 121 0 0 chr9 7621041 7621074 -116455098 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 643 506 321 57 16 chr9 7621470 7621787 -116454385 - L1MC4 LINE L1 -831 7211 6882 1 643 838 266 122 13 chr9 7621798 7622110 -116454062 - MLT1A0 LTR MaLR -1 364 19 1 643 392 302 150 2 chr9 7622385 7622625 -116453547 + MTD LTR MaLR 127 407 0 1 643 181 319 0 0 chr9 7623324 7623371 -116452801 - MER5A DNA MER1_type 0 189 143 1 643 673 227 6 69 chr9 7623384 7623559 -116452613 + RSINE1 SINE B4 2 165 0 1 643 216 200 0 0 chr9 7623563 7623613 -116452559 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 643 12362 58 8 73 chr9 7623613 7623741 -116452431 + RLTR22_Mus LTR ERVK 1 139 -1669 1 643 1322 92 27 0 chr9 7623741 7623926 -116452246 + B2_Mm1a SINE B2 2 191 -2 1 643 12362 58 8 73 chr9 7623926 7625731 -116450441 + RLTR22_Mus LTR ERVK 140 1808 0 1 643 480 200 0 0 chr9 7625731 7625831 -116450341 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 643 429 304 69 17 chr9 7625835 7626009 -116450163 + Lx8 LINE L1 7286 7468 -5 1 643 335 284 21 0 chr9 7626969 7627064 -116449108 + B4 SINE B4 1 97 -195 1 643 363 160 0 0 chr9 7627484 7627559 -116448613 + (CAG)n Simple_repeat Simple_repeat 1 75 0 1 643 252 0 0 0 chr9 7627697 7627725 -116448447 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 1 643 518 283 0 0 chr9 7627746 7627859 -116448313 - RSINE1 SINE B4 -21 144 32 1 643 26 0 0 0 chr9 7628452 7628478 -116447694 + AT_rich Low_complexity Low_complexity 1 26 0 1 643 185 256 0 0 chr9 7630037 7630080 -116446092 - L2a LINE L2 -74 3352 3310 1 643 234 281 15 59 chr9 7630356 7630424 -116445748 + ID4 SINE ID 2 66 -17 1 643 303 28 0 0 chr9 7630428 7630464 -116445708 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 643 331 274 0 0 chr9 7630548 7630621 -116445551 - Tigger5 DNA MER2_type 0 2406 2334 1 643 456 360 11 6 chr9 7630670 7630849 -116445323 - Tigger5 DNA MER2_type -2225 181 2 1 643 461 298 24 24 chr9 7631131 7631296 -116444876 + B3 SINE B2 48 212 -4 1 643 655 232 115 26 chr9 7632362 7632596 -116443576 - Lx8 LINE L1 -4 7469 7215 1 643 252 0 0 0 chr9 7633050 7633078 -116443094 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 643 622 306 26 5 chr9 7633206 7633400 -116442772 - B3A SINE B2 0 198 1 1 643 298 191 59 76 chr9 7633791 7633910 -116442262 + ID2 SINE ID 6 122 -30 1 643 548 275 147 4 chr9 7633995 7634247 -116441925 - Lx8 LINE L1 -199 7274 6987 1 643 781 154 103 0 chr9 7634389 7634525 -116441647 + B1_Mur4 SINE Alu 1 150 0 1 643 807 166 35 0 chr9 7634655 7634800 -116441372 + B1_Mur4 SINE Alu 1 150 0 1 643 332 239 34 11 chr9 7635654 7635743 -116440429 + B4 SINE B4 158 248 -44 1 643 618 49 0 0 chr9 7635745 7635827 -116440345 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 643 324 0 0 0 chr9 7637203 7637239 -116438933 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 643 234 0 0 0 chr9 7637476 7637502 -116438670 + (A)n Simple_repeat Simple_repeat 1 26 0 1 643 1021 181 75 0 chr9 7638557 7638756 -116437416 + B3 SINE B2 3 216 0 1 643 28 29 0 0 chr9 7638774 7638809 -116437363 + AT_rich Low_complexity Low_complexity 1 35 0 1 643 198 91 0 0 chr9 7638820 7638853 -116437319 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 1 643 360 64 0 0 chr9 7638855 7638902 -116437270 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 643 584 240 39 20 chr9 7640462 7640615 -116435557 + RSINE1 SINE B4 8 163 -2 1 643 23 54 0 0 chr9 7640618 7640655 -116435517 + AT_rich Low_complexity Low_complexity 1 37 0 1 643 31 0 0 0 chr9 7641511 7641542 -116434630 + AT_rich Low_complexity Low_complexity 1 31 0 1 643 22 35 0 0 chr9 7642084 7642113 -116434059 + AT_rich Low_complexity Low_complexity 1 29 0 1 643 31 44 0 0 chr9 7642332 7642377 -116433795 + AT_rich Low_complexity Low_complexity 1 45 0 1 643 348 196 335 174 chr9 7642391 7642558 -116433614 + B3A SINE B2 2 195 -3 1 643 207 315 118 11 chr9 7643289 7643382 -116432790 + MIRb SINE MIR 37 139 -129 1 643 21 0 0 0 chr9 7643561 7643582 -116432590 + AT_rich Low_complexity Low_complexity 1 21 0 1 643 357 271 264 9 chr9 7644748 7644968 -116431204 - Lx8 LINE L1 -6 7467 7192 1 643 329 259 52 29 chr9 7645011 7645131 -116431041 - MIRb SINE MIR -43 165 41 1 643 1111 150 19 4 chr9 7645786 7646053 -116430119 + (TGGA)n Simple_repeat Simple_repeat 1 270 0 1 643 941 235 15 20 chr9 7646431 7646635 -116429537 + ID_B1 SINE B4 8 210 -14 1 643 405 0 0 0 chr9 7646852 7646897 -116429275 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 643 4023 47 2 4 chr9 7646897 7647378 -116428794 - L1Md_F3 LINE L1 -18 6566 6086 1 643 375 242 34 0 chr9 7647437 7647525 -116428647 + PB1D10 SINE Alu 5 99 -21 2 643 3314 133 4 51 chr9 7647633 7648186 -116427986 - RLTR11A2 LTR ERVK 0 527 1 2 643 626 265 68 0 chr9 7648349 7648496 -116427676 - RSINE1 SINE B4 -6 159 3 2 643 1168 56 0 12 chr9 7649267 7649429 -116426743 + B2_Mm2 SINE B2 2 161 -34 2 643 180 0 0 0 chr9 7649430 7649450 -116426722 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 643 799 187 159 0 chr9 7649466 7649648 -116426524 - B3 SINE B2 -5 211 1 2 643 1155 261 84 56 chr9 7651429 7651528 -116424644 + RCHARR1 DNA MER1_type 27 123 -851 2 643 1167 75 0 0 chr9 7651528 7651674 -116424498 + B1_Mus1 SINE Alu 2 147 -1 2 643 1155 261 84 56 chr9 7651674 7651988 -116424184 + RCHARR1 DNA MER1_type 124 452 -522 2 643 608 197 101 43 chr9 7652004 7652211 -116423961 + RCHARR1 DNA MER1_type 750 968 -6 2 643 1004 124 6 0 chr9 7652285 7652463 -116423709 + (GGA)n Simple_repeat Simple_repeat 2 180 0 2 643 353 286 84 0 chr9 7653740 7653859 -116422313 + ID_B1 SINE B4 80 208 -16 2 643 219 36 0 0 chr9 7653859 7653887 -116422285 + (CAT)n Simple_repeat Simple_repeat 3 30 0 2 643 765 194 0 16 chr9 7655923 7656106 -116420066 + CT-rich Low_complexity Low_complexity 1 180 0 2 643 779 207 7 0 chr9 7656127 7656272 -116419900 - B1_Mm SINE Alu 0 147 2 2 643 22 56 0 0 chr9 7656425 7656461 -116419711 + AT_rich Low_complexity Low_complexity 1 36 0 2 643 527 285 22 0 chr9 7656943 7657080 -116419092 - RSINE1 SINE B4 -15 150 11 2 643 245 273 30 0 chr9 7657647 7657713 -116418459 + ID2 SINE ID 2 69 -14 2 643 589 252 22 0 chr9 7658690 7658829 -116417343 + B1_Mur1 SINE Alu 5 146 -3 2 643 338 253 215 72 chr9 7658851 7659362 -116416810 + L1M4b LINE L1 2328 2911 -4423 2 643 582 243 219 26 chr9 7659539 7659767 -116416405 - B4 SINE B4 -18 274 3 2 643 305 210 16 0 chr9 7659820 7659882 -116416290 + ID_B1 SINE B4 98 160 -64 2 643 384 249 173 0 chr9 7659925 7660122 -116416050 + L1M4b LINE L1 3081 3311 -4023 2 643 482 248 107 0 chr9 7660248 7660369 -116415803 - RSINE1 SINE B4 -22 143 10 2 643 815 182 143 11 chr9 7660410 7660599 -116415573 - B3 SINE B2 0 216 3 2 643 285 219 68 0 chr9 7660759 7660832 -116415340 + ID4 SINE ID 2 79 -4 2 643 194 77 0 71 chr9 7660886 7660928 -116415244 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 643 1214 41 7 0 chr9 7660928 7661073 -116415099 - B1_Mus2 SINE Alu 0 147 2 2 643 2147 85 147 0 chr9 7661287 7661676 -116414496 - RLTR47_MM LTR ERV1 -86 446 1 2 643 545 293 70 30 chr9 7661677 7662032 -116414140 - RLTR6-int LTR ERV1 -51 7727 7448 2 643 418 143 336 8 chr9 7662696 7662830 -116413342 - RLTR47_MM LTR ERV1 0 532 355 2 643 403 258 11 0 chr9 7663080 7663173 -116412999 - B1F1 SINE Alu -55 94 1 2 643 322 266 30 69 chr9 7663432 7663533 -116412639 + B3A SINE B2 66 162 -36 2 643 2024 130 65 0 chr9 7663534 7663842 -116412330 + ORR1A4 LTR MaLR 1 328 -1 2 643 3962 160 14 63 chr9 7663843 7664683 -116411489 + ORR1A4-int LTR MaLR 1 799 -1164 2 643 1342 136 63 70 chr9 7664474 7664758 -116411414 + MT2B LTR ERVL 6 287 -314 2 643 7073 136 6 33 chr9 7664717 7665997 -116410175 + ORR1A4-int LTR MaLR 718 1962 -1 2 643 1701 129 34 11 chr9 7665998 7666315 -116409857 + ORR1A4 LTR MaLR 1 386 -8 2 643 1984 308 90 35 chr9 7666418 7667865 -116408307 + L1MB7 LINE L1 3529 5054 -1092 2 643 379 304 124 50 chr9 7667886 7668208 -116407964 + L1MB7 LINE L1 5490 5835 -349 2 643 586 199 94 8 chr9 7668262 7668389 -116407783 + ID_B1 SINE B4 86 223 -1 2 643 393 250 42 0 chr9 7668980 7669076 -116407096 + RSINE1 SINE B4 66 165 0 2 643 801 183 0 0 chr9 7669077 7669309 -116406863 + (CA)n Simple_repeat Simple_repeat 1 232 0 2 643 226 222 0 36 chr9 7669686 7669742 -116406430 + GA-rich Low_complexity Low_complexity 2 55 0 2 643 288 271 89 41 chr9 7670186 7670332 -116405840 + Charlie18a DNA MER1_type 130 282 -60 2 643 645 147 0 0 chr9 7671846 7671955 -116404217 + (A)n Simple_repeat Simple_repeat 1 109 0 2 643 406 274 163 0 chr9 7672001 7672154 -116404018 + ID_B1 SINE B4 38 215 -9 2 643 314 307 34 0 chr9 7672183 7672271 -116403901 + PB1D7 SINE Alu 24 114 -6 2 643 764 260 10 30 chr9 7674549 7674747 -116401425 + B3A SINE B2 3 196 -2 2 643 1914 228 80 11 chr9 7674794 7675322 -116400850 + L1MB7 LINE L1 5621 6184 0 2 643 193 340 96 35 chr9 7675529 7675727 -116400445 + MIR SINE MIR 19 228 -34 2 643 259 227 98 43 chr9 7676194 7676286 -116399886 + MER2 DNA MER2_type 91 187 -158 2 643 302 299 40 46 chr9 7677712 7677879 -116398293 - L1M5 LINE L1 -512 5682 5516 2 643 211 321 0 0 chr9 7679245 7679301 -116396871 - MIRb SINE MIR -185 83 28 2 643 281 250 109 0 chr9 7679828 7679920 -116396252 + PB1D10 SINE Alu 2 103 -14 2 643 285 296 10 30 chr9 7679922 7680023 -116396149 + GA-rich Low_complexity Low_complexity 4 102 0 2 643 2736 25 28 0 chr9 7680031 7680349 -116395823 + IAPLTR2b LTR ERVK 1 327 0 2 643 641 249 5 111 chr9 7680456 7680664 -116395508 + B3A SINE B2 2 187 -11 2 643 3173 90 67 1 chr9 7680870 7681343 -116394829 - L1_Mus2 LINE L1 -930 5636 5133 2 643 1787 96 0 71 chr9 7681328 7681610 -116394562 + L1_Mus2 LINE L1 6305 6566 0 2 643 614 293 28 38 chr9 7682421 7682715 -116393457 + RLTR19 LTR ERVK 337 715 0 2 643 654 245 0 14 chr9 7682981 7683122 -116393050 - B3 SINE B2 -77 139 1 2 643 442 270 58 7 chr9 7684022 7684160 -116392012 + ID_B1 SINE B4 2 146 -78 2 643 354 61 0 0 chr9 7684179 7684228 -116391944 + (A)n Simple_repeat Simple_repeat 1 49 0 2 643 368 344 49 42 chr9 7684368 7684653 -116391519 + Lx8 LINE L1 7187 7473 0 2 643 517 258 0 8 chr9 7685014 7685135 -116391037 + B1_Mur1 SINE Alu 29 148 -1 2 643 671 65 11 0 chr9 7685139 7685232 -116390940 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 643 573 171 25 33 chr9 7685322 7685336 -116390836 - PB1D9 SINE Alu 0 120 109 2 643 646 12 24 0 chr9 7685336 7685419 -116390753 + (TTC)n Simple_repeat Simple_repeat 3 87 0 2 643 573 171 25 33 chr9 7685419 7685525 -116390647 - PB1D9 SINE Alu -12 108 1 2 643 270 81 0 0 chr9 7685530 7685567 -116390605 + (TTTTC)n Simple_repeat Simple_repeat 5 41 0 2 643 221 157 0 56 chr9 7685960 7686014 -116390158 + (CACCC)n Simple_repeat Simple_repeat 1 51 0 2 643 638 178 189 14 chr9 7686863 7687011 -116389161 + B3 SINE B2 7 180 -36 2 643 243 0 0 0 chr9 7687024 7687051 -116389121 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 643 645 293 92 13 chr9 7687392 7687620 -116388552 + B4A SINE B4 45 290 -2 2 643 367 241 11 11 chr9 7687887 7687975 -116388197 + RSINE1 SINE B4 1 88 -77 2 643 981 202 63 15 chr9 7688019 7688225 -116387947 + B3 SINE B2 1 216 0 2 643 372 43 0 0 chr9 7688574 7688620 -116387552 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 643 185 0 0 39 chr9 7689346 7689372 -116386800 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 643 1298 255 109 25 chr9 7690293 7691125 -116385047 - L1MC1 LINE L1 -211 6133 5192 2 643 257 183 17 0 chr9 7691491 7691551 -116384621 + CT-rich Low_complexity Low_complexity 3 63 0 2 643 269 192 135 48 chr9 7691566 7691670 -116384502 - B1F SINE Alu -26 123 11 2 643 415 260 10 20 chr9 7693196 7693294 -116382878 + B1F SINE Alu 49 145 -4 2 643 248 0 31 0 chr9 7693369 7693401 -116382771 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 643 327 115 39 0 chr9 7693744 7693796 -116382376 + B1_Mus1 SINE Alu 2 55 -93 2 643 216 0 0 0 chr9 7694252 7694276 -116381896 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 643 581 214 0 11 chr9 7694276 7694456 -116381716 + (TATG)n Simple_repeat Simple_repeat 2 179 0 2 643 432 234 9 4 chr9 7694465 7694697 -116381475 + (TG)n Simple_repeat Simple_repeat 1 233 0 2 643 443 248 152 0 chr9 7694728 7694853 -116381319 - B4 SINE B4 -146 146 3 2 643 231 114 0 0 chr9 7695769 7695804 -116380368 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 643 403 278 33 0 chr9 7696319 7696409 -116379763 + RSINE1 SINE B4 71 163 -2 2 643 239 183 50 0 chr9 7696429 7696489 -116379683 + (ATAAG)n Simple_repeat Simple_repeat 3 65 0 2 643 183 100 0 0 chr9 7696794 7696824 -116379348 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2 643 649 231 102 23 chr9 7697016 7697193 -116378979 + ORR1E LTR MaLR 1 191 -168 2 643 204 228 0 0 chr9 7697193 7697250 -116378922 + C-rich Low_complexity Low_complexity 6 62 0 2 643 421 246 43 50 chr9 7697294 7697435 -116378737 + ORR1E LTR MaLR 231 370 0 2 643 239 327 26 175 chr9 7697982 7698171 -116378001 - RSINE1 SINE B4 0 165 5 2 643 310 248 23 203 chr9 7699003 7699180 -116376992 - B1_Mur2 SINE Alu -2 145 1 2 643 180 0 0 0 chr9 7699893 7699913 -116376259 + (T)n Simple_repeat Simple_repeat 1 20 0 2 643 8063 59 0 8 chr9 7699926 7699942 -116376230 - L1Md_F2 LINE L1 -2 6580 6566 2 643 1581 52 0 0 chr9 7699942 7700133 -116376039 - B2_Mm1a SINE B2 -2 191 1 2 643 35824 68 11 5 chr9 7700134 7706072 -116370100 - L1Md_F2 LINE L1 0 6582 601 2 643 266 284 11 11 chr9 7706256 7706345 -116369827 + B4A SINE B4 12 100 -192 2 643 1497 163 24 14 chr9 7706498 7706785 -116369387 + RMER13B LTR ERVK 1 290 -618 2 643 262 275 112 0 chr9 7706767 7706847 -116369325 + RMER13B LTR ERVK 797 885 -23 2 643 297 0 0 0 chr9 7706853 7706886 -116369286 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 643 2473 127 18 48 chr9 7707241 7707698 -116368474 + RLTR11B LTR ERVK 8 450 -3 2 643 299 270 45 0 chr9 7708280 7708369 -116367803 - L1MB2 LINE L1 -3 6168 6076 2 643 688 284 34 0 chr9 7708385 7708593 -116367579 - ID_B1 SINE B4 -6 218 4 2 643 856 228 53 24 chr9 7708645 7708852 -116367320 - B3 SINE B2 -2 214 2 2 643 468 276 48 14 chr9 7708870 7709017 -116367155 - MER20 DNA MER1_type -67 152 1 2 643 1286 167 159 7 chr9 7709121 7709417 -116366755 + MTC LTR MaLR 5 345 -76 3 643 21 36 0 0 chr9 7709452 7709480 -116366692 + AT_rich Low_complexity Low_complexity 1 28 0 3 643 320 258 45 0 chr9 7709480 7709569 -116366603 + L1MB2 LINE L1 6076 6168 -3 3 643 239 163 0 0 chr9 7709705 7709748 -116366424 + MTC LTR MaLR 369 411 -8 3 643 373 111 42 0 chr9 7709940 7710012 -116366160 + (TATG)n Simple_repeat Simple_repeat 4 78 0 3 643 3293 58 2 0 chr9 7710054 7710449 -116365723 - MTA_Mm LTR MaLR 0 396 1 3 643 5765 79 6 4 chr9 7710449 7711285 -116364887 - MTA_Mm-int LTR MaLR 0 1098 261 3 643 449 236 36 18 chr9 7711233 7711345 -116364827 - B1_Mus1 SINE Alu -33 115 2 3 643 494 154 154 0 chr9 7711345 7711436 -116364736 + RLTR20A LTR ERVK 437 541 0 3 643 417 310 108 66 chr9 7712100 7712387 -116363785 - MLT2B5 LTR ERVL -236 365 67 3 643 476 258 12 6 chr9 7712297 7712423 -116363749 - MTEa LTR MaLR -232 147 24 3 643 1054 92 57 11 chr9 7712766 7712941 -116363231 - B2_Mm2 SINE B2 -7 188 6 3 643 475 313 56 56 chr9 7712954 7713167 -116363005 - ID_B1 SINE B4 -7 217 5 3 643 337 230 13 13 chr9 7713377 7713452 -116362720 - RSINE1 SINE B4 -88 77 3 3 643 252 219 94 0 chr9 7713452 7713516 -116362656 + LTR16B1 LTR ERVL 410 479 -1 3 643 249 315 130 35 chr9 7713654 7713769 -116362403 - MLT1H1 LTR MaLR -185 370 245 3 643 729 227 134 11 chr9 7713769 7713956 -116362216 - B3 SINE B2 0 216 7 3 643 735 78 0 0 chr9 7714064 7714167 -116362005 + (CATA)n Simple_repeat Simple_repeat 2 104 0 3 643 239 299 30 0 chr9 7715172 7715239 -116360933 + ID4 SINE ID 4 72 -11 3 643 697 220 57 0 chr9 7715364 7715505 -116360667 - B1_Mur1 SINE Alu 0 149 1 3 643 340 255 112 0 chr9 7715654 7715752 -116360420 - ID_B1 SINE B4 -10 214 106 3 643 1116 81 0 0 chr9 7716381 7716659 -116359513 + (CA)n Simple_repeat Simple_repeat 1 278 0 3 643 482 259 49 35 chr9 7716802 7716946 -116359226 + B3A SINE B2 2 147 -51 3 643 243 0 0 0 chr9 7716950 7716977 -116359195 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 643 351 0 0 0 chr9 7716977 7717015 -116359157 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 643 22 0 0 0 chr9 7717018 7717040 -116359132 + AT_rich Low_complexity Low_complexity 1 22 0 3 643 572 258 76 0 chr9 7717329 7717461 -116358711 + RSINE1 SINE B4 3 144 -21 3 643 651 276 60 95 chr9 7717518 7717886 -116358286 - RMER20B LTR ERVK -39 588 234 3 643 6771 106 40 23 chr9 7718302 7719349 -116356823 - Lx2 LINE L1 -3 6994 5930 3 643 3097 83 0 0 chr9 7719349 7719832 -116356340 + Lx2 LINE L1 5449 5931 -1066 3 643 306 301 52 26 chr9 7719903 7720019 -116356153 - L1M5 LINE L1 -2394 3752 3634 3 643 2360 165 174 6 chr9 7720172 7720701 -116355471 + RLTR17 LTR ERVK 1 618 -74 3 643 251 250 36 95 chr9 7720739 7720823 -116355349 + ID4_ SINE ID 5 83 0 3 643 22 0 0 0 chr9 7720885 7720907 -116355265 + AT_rich Low_complexity Low_complexity 1 22 0 3 643 860 32 24 0 chr9 7721096 7721221 -116354951 - L1Md_F2 LINE L1 0 6582 6455 3 643 689 280 72 18 chr9 7722325 7722547 -116353625 + B4 SINE B4 11 244 -48 3 643 917 116 0 7 chr9 7722613 7722760 -116353412 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 3 643 817 182 306 26 chr9 7722768 7723039 -116353133 + MTC LTR MaLR 1 347 -74 3 643 493 128 4 25 chr9 7724743 7724840 -116351332 + MTC LTR MaLR 263 413 -8 3 643 5002 181 49 31 chr9 7724844 7725063 -116351109 + MTC-int LTR MaLR 1 204 -1054 3 643 1374 85 5 11 chr9 7725063 7725254 -116350918 + B2_Mm2 SINE B2 1 190 -5 3 643 5002 181 49 31 chr9 7725254 7726113 -116350059 + MTC-int LTR MaLR 205 1099 -159 3 643 3090 208 221 10 chr9 7726121 7726895 -116349277 - RMER1C Other Other -12 1330 394 3 643 507 162 199 6 chr9 7726895 7727056 -116349116 + MTC-int LTR MaLR 1066 1257 -1 3 643 2215 155 45 59 chr9 7727057 7727140 -116349032 + MTC LTR MaLR 1 96 -325 3 643 1183 68 0 7 chr9 7727140 7727289 -116348883 + B1_Mus1 SINE Alu 1 148 0 3 643 2215 155 45 59 chr9 7727289 7727630 -116348542 + MTC LTR MaLR 97 418 -3 3 643 204 40 0 0 chr9 7727666 7727691 -116348481 + (A)n Simple_repeat Simple_repeat 1 25 0 3 643 332 200 42 14 chr9 7727778 7727849 -116348323 - ID4 SINE ID -9 74 2 3 643 1660 21 16 0 chr9 7728102 7728290 -116347882 + B2_Mm1t SINE B2 2 192 -1 3 643 2732 236 66 66 chr9 7728581 7729366 -116346806 - RMER1C Other Other -6 1336 560 3 643 14149 78 27 6 chr9 7729979 7732378 -116343794 - L1VL2 LINE L1 -628 2987 547 3 643 1469 73 11 0 chr9 7732378 7732569 -116343603 + B2_Mm1t SINE B2 1 193 0 3 643 6496 69 20 14 chr9 7732569 7732923 -116343249 - L1VL2 LINE L1 -5789 546 177 3 644 537 236 107 0 chr9 7733766 7733906 -116342266 + ID_B1 SINE B4 1 155 -69 3 644 265 337 69 10 chr9 7733915 7734017 -116342155 + RSINE1 SINE B4 58 165 0 3 644 481 241 49 97 chr9 7734048 7734257 -116341915 + B3 SINE B2 1 182 -16 3 644 321 242 0 0 chr9 7734318 7734384 -116341788 + ID_B1 SINE B4 158 223 -1 3 644 276 303 15 0 chr9 7734743 7734809 -116341363 - ID SINE ID -153 71 5 3 644 197 33 0 32 chr9 7734809 7734840 -116341332 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 3 644 781 280 24 40 chr9 7734986 7735239 -116340933 + B4A SINE B4 26 274 -18 3 644 649 235 86 0 chr9 7735442 7735629 -116340543 + ID_B1 SINE B4 1 203 -21 3 644 526 246 8 8 chr9 7735962 7736085 -116340087 - B1F SINE Alu -5 144 22 3 644 2139 240 56 22 chr9 7736376 7736929 -116339243 + Lx8 LINE L1 6576 7147 -326 3 644 322 293 92 37 chr9 7736926 7737089 -116339083 + Lx8 LINE L1 7300 7471 -2 3 644 27 0 0 0 chr9 7737464 7737491 -116338681 + AT_rich Low_complexity Low_complexity 1 27 0 3 644 2680 206 29 157 chr9 7737519 7738335 -116337837 + RMER1B Other Other 350 1061 -5 3 644 843 10 0 0 chr9 7738783 7738879 -116337293 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 644 5186 50 8 2 chr9 7738893 7739529 -116336643 - L1_Mus2 LINE L1 0 6566 5927 3 644 9490 123 18 4 chr9 7739529 7741551 -116334621 - L1Md_F LINE L1 -3270 2613 564 3 644 378 286 199 24 chr9 7741553 7741649 -116334523 + Lx8 LINE L1 7224 7332 -141 3 644 1196 86 11 0 chr9 7741649 7741823 -116334349 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 3 644 378 286 199 24 chr9 7741823 7741937 -116334235 + Lx8 LINE L1 7333 7471 -2 3 644 843 152 0 0 chr9 7741978 7742116 -116334056 + B1_Mur1 SINE Alu 12 149 0 3 644 255 250 24 48 chr9 7742134 7742218 -116333954 + ID SINE ID 2 83 -141 3 644 180 0 0 0 chr9 7742222 7742242 -116333930 + (CAGAGA)n Simple_repeat Simple_repeat 3 22 0 3 644 573 246 8 0 chr9 7742545 7742667 -116333505 - ID_B1 SINE B4 -1 223 101 3 644 393 267 167 0 chr9 7742718 7742838 -116333334 + ID_B1 SINE B4 2 141 -83 3 644 640 132 25 34 chr9 7743336 7743454 -116332718 + RMER6C LTR ERVK 1 117 -573 3 644 313 257 53 101 chr9 7743436 7743644 -116332528 + RMER10A LTR ERVL 228 425 -17 3 644 461 260 113 31 chr9 7743878 7744037 -116332135 - MTD LTR MaLR -38 381 210 3 644 1030 193 32 5 chr9 7744076 7744295 -116331877 - MTD LTR MaLR -194 225 1 3 644 205 288 45 0 chr9 7744586 7744652 -116331520 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 3 644 366 23 0 0 chr9 7744692 7744735 -116331437 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 3 644 792 0 0 0 chr9 7744736 7744824 -116331348 + (GGAGA)n Simple_repeat Simple_repeat 3 90 0 3 644 1508 17 6 0 chr9 7744825 7745004 -116331168 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 3 644 898 242 0 25 chr9 7745046 7745249 -116330923 + B3A SINE B2 1 198 0 3 644 380 179 0 23 chr9 7745378 7745464 -116330708 + MTE2a LTR MaLR 294 377 -2 3 644 2213 119 0 44 chr9 7745471 7745815 -116330357 - ORR1A4 LTR MaLR 0 329 1 3 644 23 92 0 0 chr9 7745836 7745901 -116330271 + AT_rich Low_complexity Low_complexity 1 65 0 3 644 1311 188 138 37 chr9 7745914 7746087 -116330085 - ORR1C2 LTR MaLR -1 383 180 3 644 567 66 0 0 chr9 7746087 7746163 -116330009 + (GGGA)n Simple_repeat Simple_repeat 2 77 0 3 644 1311 188 138 37 chr9 7746163 7746337 -116329835 - ORR1C2 LTR MaLR -205 179 2 3 644 366 258 169 37 chr9 7747395 7747584 -116328588 - B3 SINE B2 -2 214 1 3 644 2681 197 130 34 chr9 7748256 7748733 -116327439 - RMER1B Other Other -4 1062 556 3 644 198 0 0 0 chr9 7748733 7748755 -116327417 + (CCCTG)n Simple_repeat Simple_repeat 3 24 0 3 644 2681 197 130 34 chr9 7748755 7748932 -116327240 - RMER1B Other Other -511 555 346 3 644 996 118 88 22 chr9 7748979 7749161 -116327011 - B2_Mm2 SINE B2 0 195 2 3 644 1069 270 62 6 chr9 7749405 7749759 -116326413 + MTEb LTR MaLR 1 374 -5 3 644 373 287 90 0 chr9 7749783 7749905 -116326267 + B1F SINE Alu 2 134 -15 3 644 212 312 26 13 chr9 7750002 7750080 -116326092 - ID4_ SINE ID -4 79 1 3 644 477 0 0 0 chr9 7750319 7750372 -116325800 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 644 1836 179 65 0 chr9 7750754 7751107 -116325065 + RLTR14 LTR ERV1 1 376 -6 3 644 2642 119 36 13 chr9 7751196 7751671 -116324501 - RLTR21 LTR ERVK -524 1048 563 3 644 3728 118 5 0 chr9 7752345 7752904 -116323268 - RLTR21 LTR ERVK -1010 562 1 3 644 477 0 0 0 chr9 7752938 7752991 -116323181 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 644 797 254 55 30 chr9 7752994 7753403 -116322769 + RMER10A LTR ERVL 47 398 0 3 644 1620 42 0 0 chr9 7753438 7753629 -116322543 - B2_Mm1a SINE B2 -1 192 2 3 644 809 279 65 101 chr9 7754265 7754384 -116321788 + MTE2a LTR MaLR 1 127 -252 3 644 844 236 73 5 chr9 7754384 7754576 -116321596 - B3 SINE B2 -10 206 2 3 644 809 279 65 101 chr9 7754576 7754842 -116321330 + MTE2a LTR MaLR 128 372 -7 3 644 1029 129 0 0 chr9 7755120 7755455 -116320717 + (TG)n Simple_repeat Simple_repeat 1 335 0 3 644 225 59 29 0 chr9 7755527 7755561 -116320611 - B3A SINE B2 -158 40 6 3 644 352 257 28 28 chr9 7755762 7755870 -116320302 - B1_Mm SINE Alu 0 147 40 3 644 367 204 191 11 chr9 7756402 7756496 -116319676 - ID_B1 SINE B4 -21 203 93 3 644 987 279 54 54 chr9 7756557 7756925 -116319247 + MTEb LTR MaLR 4 371 -8 3 644 25 51 0 0 chr9 7757036 7757075 -116319097 + AT_rich Low_complexity Low_complexity 1 39 0 3 644 207 0 0 0 chr9 7757275 7757298 -116318874 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 644 1159 65 0 0 chr9 7757298 7757436 -116318736 - B1_Mm SINE Alu -9 138 1 4 644 2754 45 0 0 chr9 7757491 7757825 -116318347 - L1_Mus1 LINE L1 -1 6566 6233 4 644 5863 170 76 54 chr9 7757860 7761570 -116314602 - ETnERV2-int LTR ERVK -3312 4094 320 4 644 1183 236 55 55 chr9 7761580 7761965 -116314207 - ETnERV2-int LTR ERVK -2927 387 3 4 644 2892 59 54 0 chr9 7761968 7762358 -116313814 - RLTR9F LTR ERVK -4 411 1 4 644 403 279 73 0 chr9 7762454 7762590 -116313582 - B1F SINE Alu -2 147 2 4 644 597 255 22 7 chr9 7762592 7762730 -116313442 - B1F SINE Alu -4 145 6 4 644 434 254 58 58 chr9 7765193 7765331 -116310841 - ID_B1 SINE B4 -5 219 82 4 644 586 243 57 7 chr9 7766242 7766383 -116309789 + B1_Mur3 SINE Alu 2 149 0 4 644 30 0 0 0 chr9 7766383 7766413 -116309759 + AT_rich Low_complexity Low_complexity 1 30 0 4 644 234 239 0 0 chr9 7766417 7766463 -116309709 + B1F1 SINE Alu 3 48 -101 4 644 390 131 0 28 chr9 7768429 7768500 -116307672 - MTC LTR MaLR -352 69 1 4 644 263 195 56 33 chr9 7768970 7769060 -116307112 - L1MB3 LINE L1 -12 6171 6080 4 644 354 287 31 21 chr9 7769108 7769204 -116306968 - B1F SINE Alu -32 117 21 4 644 303 339 9 18 chr9 7769204 7769222 -116306950 - ID_B1 SINE B4 -29 195 83 4 644 474 33 0 0 chr9 7769554 7769614 -116306558 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 644 489 296 23 40 chr9 7769619 7769795 -116306377 + B3A SINE B2 10 182 -16 4 644 288 0 0 0 chr9 7770266 7770298 -116305874 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 644 183 372 0 23 chr9 7770346 7770434 -116305738 - L2a LINE L2 -305 3121 3036 4 644 489 255 0 0 chr9 7771007 7771109 -116305063 - RSINE1 SINE B4 -61 104 3 4 644 331 230 221 7 chr9 7771109 7771258 -116304914 + L1MA8 LINE L1 6093 6273 -18 4 644 218 128 0 60 chr9 7771290 7771340 -116304832 + T-rich Low_complexity Low_complexity 2 48 0 4 644 472 116 23 0 chr9 7771443 7771529 -116304643 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 4 644 229 204 0 0 chr9 7771731 7771785 -116304387 + T-rich Low_complexity Low_complexity 1 54 0 4 644 180 97 0 0 chr9 7772375 7772406 -116303766 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 644 1152 213 113 15 chr9 7773616 7773909 -116302263 - ORR1C2 LTR MaLR 0 384 71 4 644 389 285 73 0 chr9 7773917 7774040 -116302132 + B3A SINE B2 60 191 -7 4 644 234 150 0 0 chr9 7774318 7774358 -116301814 + (T)n Simple_repeat Simple_repeat 1 40 0 4 644 255 261 58 16 chr9 7774603 7774724 -116301448 - L1M2 LINE L1 -537 5763 5638 4 644 295 189 0 0 chr9 7775075 7775128 -116301044 - L1M2 LINE L1 -3960 2183 2131 4 644 214 186 0 0 chr9 7775713 7775756 -116300416 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 644 1999 132 105 6 chr9 7775996 7776330 -116299842 - ORR1B2 LTR MaLR 0 367 1 4 644 6434 172 100 19 chr9 7776330 7777726 -116298446 - ORR1B2-int LTR MaLR 0 1509 1 4 644 1545 143 39 18 chr9 7777726 7778011 -116298161 - ORR1B2 LTR MaLR 0 367 77 4 644 327 25 0 0 chr9 7778036 7778076 -116298096 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 644 2276 131 64 23 chr9 7778076 7778513 -116297659 - RMER6B LTR ERVK -6 455 1 4 644 650 252 186 13 chr9 7778742 7779048 -116297124 - ORR1E LTR MaLR 0 359 1 4 644 186 225 326 0 chr9 7779374 7779463 -116296709 + MIR SINE MIR 112 229 -33 4 644 279 228 25 12 chr9 7779837 7779917 -116296255 + Lx6 LINE L1 6079 6159 -1301 4 644 696 205 139 0 chr9 7779970 7780136 -116296036 + B3 SINE B2 4 192 -24 4 644 634 94 78 86 chr9 7780148 7780276 -116295896 + B1_Mur3 SINE Alu 23 149 0 4 644 2060 52 0 0 chr9 7780643 7780894 -116295278 - L1_Mus1 LINE L1 0 6567 6317 4 644 302 347 27 0 chr9 7781407 7781554 -116294618 - Tigger15a DNA TcMar -377 338 188 4 644 685 235 0 0 chr9 7782546 7782678 -116293494 - RSINE1 SINE B4 -25 140 9 4 644 2208 127 98 5 chr9 7783203 7783582 -116292590 - MTC LTR MaLR 0 421 8 4 644 196 53 0 50 chr9 7784232 7784272 -116291900 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 644 246 253 130 54 chr9 7784408 7784500 -116291672 - B1F SINE Alu -41 108 10 4 644 622 269 21 0 chr9 7784505 7784650 -116291522 + B1F SINE Alu 2 149 0 4 644 1089 118 0 0 chr9 7786988 7787157 -116289015 + (TTCC)n Simple_repeat Simple_repeat 4 172 0 4 644 198 0 0 0 chr9 7787280 7787302 -116288870 + (T)n Simple_repeat Simple_repeat 1 22 0 4 644 254 29 29 0 chr9 7787371 7787406 -116288766 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 644 1184 37 0 0 chr9 7787406 7787542 -116288630 - B1_Mm SINE Alu -10 137 2 4 644 991 172 106 69 chr9 7788367 7788585 -116287587 + URR1A DNA MER1_type 1 226 0 4 644 329 336 75 0 chr9 7788792 7788926 -116287246 - RSINE1 SINE B4 0 165 22 4 644 387 213 52 21 chr9 7790462 7790558 -116285614 + PB1D7 SINE Alu 22 120 0 4 644 251 250 16 16 chr9 7795802 7795863 -116280309 - MER2 DNA MER2_type -1 344 284 4 644 694 201 47 30 chr9 7797056 7797225 -116278947 + B4A SINE B4 52 223 -69 4 644 1156 14 21 0 chr9 7797280 7797425 -116278747 + (TAGA)n Simple_repeat Simple_repeat 3 150 0 4 644 250 231 51 13 chr9 7797515 7797594 -116278578 + L1MEc LINE L1 2370 2451 -3949 4 644 1112 236 150 60 chr9 7797602 7798081 -116278091 + MT2B2 LTR ERVL 1 522 -62 4 644 1623 166 53 34 chr9 7798286 7798966 -116277206 - RMER10A LTR ERVL 0 442 7 4 644 2122 73 28 16 chr9 7798966 7799284 -116276888 - RLTRETN_Mm LTR ERVK 0 322 1 4 644 11350 51 18 24 chr9 7799284 7800757 -116275415 - MMETn-int LTR ERVK 0 4844 3380 4 644 26287 48 4 8 chr9 7800758 7804868 -116271304 - MMETn-int LTR ERVK -2124 5282 1 4 644 2122 73 28 16 chr9 7804868 7805186 -116270986 - RLTRETN_Mm LTR ERVK 0 322 1 4 644 1388 165 94 0 chr9 7805260 7805526 -116270646 + ORR1B2 LTR MaLR 69 359 -8 4 644 531 45 0 0 chr9 7805532 7805598 -116270574 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 644 399 176 16 8 chr9 7805601 7805727 -116270445 + (TA)n Simple_repeat Simple_repeat 1 127 0 4 644 514 155 13 8 chr9 7805755 7805860 -116270312 + B1_Mus1 SINE Alu 2 108 -41 4 644 1587 236 63 3 chr9 7806261 7806623 -116269549 - MT2A LTR ERVL -149 384 1 4 644 365 250 196 43 chr9 7806664 7806827 -116269345 + B3A SINE B2 1 188 -10 4 644 263 326 65 7 chr9 7807249 7807388 -116268784 + RSINE1 SINE B4 2 148 -17 4 644 3133 171 48 41 chr9 7807513 7808020 -116268152 + L1_Mus2 LINE L1 591 1120 -5496 4 644 1083 99 7 0 chr9 7808020 7808162 -116268010 + B1_Mus1 SINE Alu 5 147 -1 4 644 207 0 0 0 chr9 7808171 7808194 -116267978 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 644 30076 112 27 26 chr9 7808194 7809089 -116267083 + L1_Mus2 LINE L1 1121 2047 -3836 4 644 4632 89 20 84 chr9 7809089 7809888 -116266284 + RMER17A LTR ERVK 1 748 -3 4 644 30076 105 25 24 chr9 7809888 7811844 -116264328 + L1_Mus2 LINE L1 2048 3983 -1900 4 644 1196 68 0 0 chr9 7811844 7811990 -116264182 + B1_Mus1 SINE Alu 1 146 -2 4 644 513 0 0 0 chr9 7811992 7812049 -116264123 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 4 644 234 0 0 0 chr9 7812049 7812074 -116264098 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 4 644 30076 83 20 23 chr9 7812074 7814675 -116261497 + L1_Mus2 LINE L1 3984 6565 -1 4 644 2041 242 139 109 chr9 7814710 7815601 -116260571 - Lx5 LINE L1 -148 6902 5985 4 644 423 178 62 45 chr9 7815661 7815773 -116260399 + PB1D9 SINE Alu 6 119 -1 4 644 210 89 69 35 chr9 7815773 7815831 -116260341 + (CAAAC)n Simple_repeat Simple_repeat 1 60 0 4 644 228 202 138 0 chr9 7815908 7816002 -116260170 + Charlie1a DNA MER1_type 1101 1207 -248 4 644 383 38 0 19 chr9 7816114 7816168 -116260004 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 644 1399 139 52 0 chr9 7816201 7816453 -116259719 - L1_Mm LINE L1 -2144 3739 3475 4 644 973 124 6 18 chr9 7816577 7816741 -116259431 + B2_Mm2 SINE B2 2 163 -32 4 644 258 32 0 0 chr9 7816741 7816772 -116259400 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 4 644 386 192 89 20 chr9 7816914 7817015 -116259157 + MT2B LTR ERVL 11 118 -415 4 644 1334 209 25 66 chr9 7817056 7817419 -116258753 + MT2B LTR ERVL 253 600 -1 4 644 1583 181 113 16 chr9 7817521 7817891 -116258281 - MTD LTR MaLR -13 406 1 4 644 500 276 129 30 chr9 7819882 7820084 -116256088 - ID_B1 SINE B4 0 224 3 4 644 234 260 241 25 chr9 7820166 7820324 -116255848 + MIRb SINE MIR 44 239 -29 4 644 562 235 7 36 chr9 7820548 7820685 -116255487 - B3A SINE B2 -65 133 1 4 644 413 308 0 17 chr9 7820755 7820874 -116255298 + ID_B1 SINE B4 79 195 -29 4 644 443 234 17 70 chr9 7821509 7821624 -116254548 + RSINE1 SINE B4 11 119 -46 4 644 508 239 26 0 chr9 7821686 7821803 -116254369 - B3 SINE B2 -86 130 11 4 644 1258 41 0 0 chr9 7821803 7821950 -116254222 + B1_Mus2 SINE Alu 1 147 0 4 644 295 233 172 11 chr9 7822070 7822157 -116254015 + RSINE1 SINE B4 4 104 -61 4 644 372 59 0 0 chr9 7822212 7822263 -116253909 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 644 300 300 64 0 chr9 7822899 7823009 -116253163 - MER91B DNA Tip100 0 190 74 4 644 322 262 18 27 chr9 7823967 7824077 -116252095 + PB1D10 SINE Alu 2 110 -7 4 644 362 290 109 10 chr9 7824237 7824338 -116251834 + RSINE1 SINE B4 55 165 0 4 644 26 0 0 0 chr9 7824360 7824386 -116251786 + AT_rich Low_complexity Low_complexity 1 26 0 4 644 3537 18 2 0 chr9 7824434 7824829 -116251343 - MTA_Mm LTR MaLR 0 396 1 4 644 307 277 86 14 chr9 7825077 7825216 -116250956 - L3 LINE CR1 -405 4084 3936 4 644 456 244 35 0 chr9 7825712 7825827 -116250345 - PB1D7 SINE Alu -26 123 5 4 644 402 260 29 0 chr9 7825872 7825976 -116250196 + PB1D10 SINE Alu 3 109 -8 5 644 625 242 99 35 chr9 7826699 7826900 -116249272 - B4A SINE B4 -72 220 7 5 644 685 254 29 6 chr9 7827671 7827845 -116248327 + B3A SINE B2 3 180 -18 5 644 1620 198 67 16 chr9 7827862 7828236 -116247936 + MTC LTR MaLR 11 403 -18 5 644 304 283 18 0 chr9 7828353 7828466 -116247706 + L1MC LINE L1 5086 5200 -946 5 644 711 239 59 37 chr9 7828473 7828660 -116247512 + B3A SINE B2 5 195 -3 5 644 351 0 0 0 chr9 7828966 7829005 -116247167 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 644 1124 70 0 0 chr9 7829085 7829228 -116246944 - B1_Mus1 SINE Alu -5 143 1 5 644 405 0 0 0 chr9 7830037 7830082 -116246090 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 644 189 0 0 0 chr9 7830082 7830103 -116246069 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 644 363 247 106 21 chr9 7830443 7830604 -116245568 + L1M3c LINE L1 1976 2156 -4942 5 644 407 205 15 28 chr9 7830935 7831051 -116245121 - MTD LTR MaLR -280 116 3 5 644 30 27 0 0 chr9 7831350 7831387 -116244785 + AT_rich Low_complexity Low_complexity 1 37 0 5 644 3123 48 0 13 chr9 7831767 7832165 -116244007 + L1_Mus1 LINE L1 6175 6567 0 5 644 357 232 182 0 chr9 7832179 7832278 -116243894 + RSINE1 SINE B4 12 128 -37 5 644 331 330 38 0 chr9 7832282 7832388 -116243784 - B1F SINE Alu -38 111 2 5 644 569 171 43 0 chr9 7832588 7832705 -116243467 - B1_Mur1 SINE Alu -7 142 21 5 644 328 228 230 49 chr9 7832898 7833124 -116243048 + L1MB2 LINE L1 5905 6171 0 5 644 454 285 23 127 chr9 7833270 7833491 -116242681 + ID_B1 SINE B4 27 224 0 5 644 716 161 43 14 chr9 7833354 7833493 -116242679 + B1_Mus1 SINE Alu 6 148 0 5 644 21 57 0 0 chr9 7835679 7835714 -116240458 + AT_rich Low_complexity Low_complexity 1 35 0 5 644 517 250 16 24 chr9 7835733 7835860 -116240312 - B1F SINE Alu 0 149 24 5 644 23 68 0 0 chr9 7836027 7836071 -116240101 + AT_rich Low_complexity Low_complexity 1 44 0 5 644 253 183 17 68 chr9 7836076 7836193 -116239979 + (TATAA)n Simple_repeat Simple_repeat 5 115 0 5 644 387 227 0 22 chr9 7836711 7836801 -116239371 + PB1D7 SINE Alu 1 88 -32 5 644 28 0 0 0 chr9 7837636 7837664 -116238508 + AT_rich Low_complexity Low_complexity 1 28 0 5 644 339 301 48 0 chr9 7838033 7838136 -116238036 - PB1D10 SINE Alu -1 116 9 5 644 28 29 0 0 chr9 7838752 7838787 -116237385 + AT_rich Low_complexity Low_complexity 1 35 0 5 644 1158 100 22 0 chr9 7838861 7839041 -116237131 + B2_Mm2 SINE B2 6 189 -6 5 644 706 223 75 30 chr9 7839117 7839316 -116236856 + B3 SINE B2 1 208 -8 5 644 1159 163 80 16 chr9 7839555 7839805 -116236367 - RMER10B LTR ERVL -132 266 1 5 644 215 292 31 0 chr9 7839843 7839908 -116236264 - ID SINE ID -142 82 16 5 644 315 266 229 23 chr9 7840472 7840603 -116235569 - RSINE1 SINE B4 -5 160 3 5 644 298 326 85 8 chr9 7840728 7840858 -116235314 + B1F2 SINE Alu 2 141 -8 5 644 23 0 0 0 chr9 7840858 7840881 -116235291 + AT_rich Low_complexity Low_complexity 1 23 0 5 644 539 68 0 0 chr9 7840889 7840962 -116235210 + B2_Mm2 SINE B2 2 74 -121 5 644 1674 84 6 137 chr9 7840963 7841307 -116234865 + MURVY-LTR LTR ERV1 1 299 -220 5 644 3253 68 38 67 chr9 7841315 7841838 -116234334 - MURVY-LTR LTR ERV1 0 519 12 5 644 1262 110 0 20 chr9 7841855 7842050 -116234122 + MURVY-LTR LTR ERV1 329 519 0 5 644 409 138 126 0 chr9 7842050 7842137 -116234035 + B2_Mm2 SINE B2 72 169 -26 5 644 802 271 59 45 chr9 7842329 7842615 -116233557 - B4A SINE B4 0 292 3 5 644 1915 221 222 16 chr9 7843543 7844201 -116231971 + RMER1C Other Other 225 1342 0 5 644 666 233 165 68 chr9 7844371 7844535 -116231637 - MTD LTR MaLR -14 405 214 5 644 288 0 0 0 chr9 7844535 7844567 -116231605 + (TTA)n Simple_repeat Simple_repeat 2 33 0 5 644 1324 97 0 6 chr9 7844572 7844749 -116231423 - B2_Mm2 SINE B2 -18 177 2 5 644 666 233 165 68 chr9 7844749 7844947 -116231225 - MTD LTR MaLR -209 210 1 5 644 386 290 79 7 chr9 7844974 7845113 -116231059 - B1F SINE Alu 0 149 1 5 644 921 153 22 50 chr9 7845153 7845469 -116230703 - RMER17C LTR ERVK -8 402 1 5 644 1291 94 28 0 chr9 7845802 7845982 -116230190 - B2_Mm2 SINE B2 -7 188 4 5 644 229 239 44 15 chr9 7846475 7846543 -116229629 + LTR55 LTR ERV 152 221 -327 5 644 1044 240 145 58 chr9 7847429 7847592 -116228580 - MTD LTR MaLR -14 405 199 5 644 180 0 0 0 chr9 7847592 7847612 -116228560 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 644 1263 102 23 0 chr9 7847612 7847788 -116228384 - B2_Mm2 SINE B2 -14 181 2 5 644 1044 240 145 58 chr9 7847788 7847968 -116228204 - MTD LTR MaLR -221 198 32 5 644 1178 159 69 38 chr9 7847999 7848261 -116227911 + ORR1B1 LTR MaLR 80 349 -45 5 644 929 48 0 8 chr9 7848265 7848391 -116227781 + B1_Mus1 SINE Alu 3 127 -21 5 644 384 22 0 0 chr9 7848398 7848443 -116227729 + (CGA)n Simple_repeat Simple_repeat 2 46 0 5 644 274 80 17 138 chr9 7848444 7848502 -116227670 + ORR1B1 LTR MaLR 343 393 -1 5 644 296 319 0 0 chr9 7848539 7848633 -116227539 - B4A SINE B4 -197 95 2 5 644 471 286 9 0 chr9 7849795 7849907 -116226265 - PB1D10 SINE Alu -3 114 2 5 644 228 81 0 0 chr9 7849949 7849963 -116226209 + (GA)n Simple_repeat Simple_repeat 1 14 0 5 644 279 93 0 0 chr9 7849963 7850006 -116226166 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 644 228 81 0 0 chr9 7850006 7850028 -116226144 + (GA)n Simple_repeat Simple_repeat 1 22 0 5 644 618 189 0 0 chr9 7850032 7850212 -116225960 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 644 222 91 0 0 chr9 7850229 7850262 -116225910 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 644 210 37 0 0 chr9 7850262 7850288 -116225884 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 644 360 224 0 0 chr9 7850290 7850460 -116225712 + (TG)n Simple_repeat Simple_repeat 1 170 0 5 644 466 84 24 0 chr9 7850499 7850519 -116225653 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 644 279 93 0 0 chr9 7850519 7850562 -116225610 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 644 466 84 24 0 chr9 7850562 7850624 -116225548 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 644 329 162 0 161 chr9 7850661 7850742 -116225430 - RSINE1 SINE B4 -96 69 2 5 644 392 380 73 0 chr9 7851257 7851449 -116224723 - ID_B1 SINE B4 -17 207 2 5 644 1473 63 21 16 chr9 7851473 7851666 -116224506 - B2_Mm2 SINE B2 -1 194 1 5 644 393 328 161 0 chr9 7851885 7852059 -116224113 - ID_B1 SINE B4 -21 203 2 5 644 422 234 0 0 chr9 7852121 7852198 -116223974 + PB1D10 SINE Alu 33 109 -8 5 644 1126 52 7 0 chr9 7852209 7852345 -116223827 + B1_Mm SINE Alu 2 138 -9 5 644 416 214 179 0 chr9 7852586 7852703 -116223469 + ID_B1 SINE B4 76 213 -11 5 644 277 331 15 61 chr9 7852958 7853090 -116223082 + RSINE1 SINE B4 2 127 -38 5 644 556 63 0 12 chr9 7853389 7853469 -116222703 + B1_Mur4 SINE Alu 72 150 0 5 644 956 193 90 20 chr9 7853518 7853719 -116222453 + B3 SINE B2 2 216 0 5 644 348 24 0 0 chr9 7853792 7853833 -116222339 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 644 393 299 0 0 chr9 7853837 7853934 -116222238 - RSINE1 SINE B4 -66 99 3 5 644 1192 87 0 0 chr9 7854011 7854184 -116221988 + B2_Mm2 SINE B2 1 173 -22 5 644 756 33 0 0 chr9 7854187 7854278 -116221894 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 5 644 382 276 124 0 chr9 7854685 7854790 -116221382 - B1F SINE Alu -31 118 1 5 644 21 0 0 0 chr9 7854832 7854853 -116221319 + AT_rich Low_complexity Low_complexity 1 21 0 5 644 555 16 0 0 chr9 7855792 7855856 -116220316 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 5 644 333 244 51 0 chr9 7855866 7855944 -116220228 - RSINE1 SINE B4 -17 148 67 5 644 438 267 67 0 chr9 7855978 7856098 -116220074 - B1F SINE Alu -1 148 21 5 644 829 175 215 0 chr9 7856325 7856502 -116219670 + B3 SINE B2 2 216 0 5 644 243 284 14 0 chr9 7856776 7856850 -116219322 + ID4_ SINE ID 8 82 -1 5 644 1473 64 21 0 chr9 7856955 7857143 -116219029 + B2_Mm2 SINE B2 2 193 -2 5 644 262 330 45 0 chr9 7857228 7857316 -116218856 - PB1D10 SINE Alu -3 114 23 5 644 42 48 0 24 chr9 7858462 7858511 -116217661 + AT_rich Low_complexity Low_complexity 1 49 0 5 644 1110 51 43 0 chr9 7858511 7858649 -116217523 - B1_Mm SINE Alu -2 145 2 5 644 42 48 0 24 chr9 7858649 7858684 -116217488 + AT_rich Low_complexity Low_complexity 1 34 0 5 644 1685 21 0 15 chr9 7859331 7859526 -116216646 - B2_Mm1a SINE B2 0 193 2 5 644 474 275 75 0 chr9 7859718 7859838 -116216334 + RSINE1 SINE B4 2 130 -35 5 644 914 231 34 5 chr9 7859963 7860172 -116216000 + B3 SINE B2 2 216 0 5 644 185 0 40 0 chr9 7861798 7861823 -116214349 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 644 1191 48 0 13 chr9 7861823 7861963 -116214209 - B1_Mus2 SINE Alu -8 139 1 5 644 750 130 15 15 chr9 7862134 7862267 -116213905 - B1_Mus1 SINE Alu -10 138 6 5 644 298 200 8 145 chr9 7862170 7862287 -116213885 - MT2B LTR ERVL -345 256 156 5 644 1226 48 7 0 chr9 7862424 7862570 -116213602 + B1_Mus2 SINE Alu 1 147 0 5 644 1260 243 56 70 chr9 7862794 7863223 -116212949 - RLTR23 LTR ERV1 0 430 8 5 644 574 370 51 18 chr9 7863286 7863797 -116212375 - RLTR6-int LTR ERV1 -59 7719 7192 5 645 306 0 0 0 chr9 7864620 7864654 -116211518 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 645 1113 305 95 55 chr9 7865341 7866104 -116210068 - MuRRS4-int LTR ERV1 -1043 4020 3164 6 645 218 32 32 0 chr9 7866556 7866587 -116209585 + (CCA)n Simple_repeat Simple_repeat 2 33 0 6 645 894 344 70 58 chr9 7866813 7867137 -116209035 - MMERGLN-int LTR ERV1 -3682 3874 3542 6 645 1271 79 102 0 chr9 7867137 7867314 -116208858 - B2_Mm2 SINE B2 0 195 1 6 645 894 313 112 42 chr9 7867314 7868124 -116208048 - MMERGLN-int LTR ERV1 -4015 3541 2633 6 645 213 39 0 0 chr9 7868419 7868445 -116207727 + (TATG)n Simple_repeat Simple_repeat 2 27 0 6 645 865 173 61 12 chr9 7868445 7868599 -116207573 - B2_Mm2 SINE B2 -31 164 1 6 645 425 290 0 9 chr9 7868986 7869094 -116207078 - PB1D10 SINE Alu -6 111 5 6 645 517 230 93 29 chr9 7869444 7869583 -116206589 - B1F SINE Alu -1 148 1 6 645 191 146 0 24 chr9 7869713 7869755 -116206417 + CT-rich Low_complexity Low_complexity 2 42 0 6 645 317 244 142 68 chr9 7869756 7869932 -116206240 - L1MA4A LINE L1 -419 5884 5696 6 645 525 223 30 56 chr9 7869935 7870116 -116206056 + ORR1C2 LTR MaLR 1 191 -168 6 645 678 140 0 0 chr9 7870142 7870256 -116205916 + (TTC)n Simple_repeat Simple_repeat 3 116 0 6 645 258 232 14 14 chr9 7870263 7870333 -116205839 + ORR1C2 LTR MaLR 174 243 -141 6 645 2170 98 9 0 chr9 7870315 7870632 -116205540 + ORR1A2 LTR MaLR 8 327 0 6 645 595 171 136 0 chr9 7870632 7870772 -116205400 + ORR1C2 LTR MaLR 219 377 -7 6 645 328 302 71 0 chr9 7870810 7870936 -116205236 - L1M3 LINE L1 -544 5639 5505 6 645 373 229 0 0 chr9 7871598 7871681 -116204491 - ID_B1 SINE B4 -58 166 84 6 645 487 188 8 86 chr9 7871886 7872014 -116204158 + B1F2 SINE Alu 12 129 -20 6 645 219 211 35 0 chr9 7872021 7872078 -116204094 + MIR SINE MIR 106 164 -98 6 645 334 290 0 48 chr9 7872150 7872255 -116203917 + ID_B1 SINE B4 70 169 -55 6 645 916 66 0 0 chr9 7872282 7872404 -116203768 + B1_Mus1 SINE Alu 19 140 -8 6 645 672 168 0 17 chr9 7873505 7873620 -116202552 + PB1D9 SINE Alu 1 113 -7 6 645 812 228 46 5 chr9 7873663 7873857 -116202315 + B3 SINE B2 2 203 -13 6 645 1172 98 69 0 chr9 7873894 7874067 -116202105 + B2_Mm2 SINE B2 2 186 -9 6 645 206 105 26 0 chr9 7874091 7874129 -116202043 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 645 989 118 7 0 chr9 7874293 7874428 -116201744 + B1_Mur4 SINE Alu 2 137 -13 6 645 1105 65 0 0 chr9 7874871 7875009 -116201163 + B1_Mus1 SINE Alu 1 138 -10 6 645 229 0 83 0 chr9 7875009 7875045 -116201127 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 645 23 0 0 0 chr9 7875260 7875283 -116200889 + AT_rich Low_complexity Low_complexity 1 23 0 6 645 259 25 50 0 chr9 7875290 7875330 -116200842 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 645 376 281 129 7 chr9 7875333 7875473 -116200699 - B3A SINE B2 -39 159 3 6 645 1337 83 17 0 chr9 7875761 7875942 -116200230 - B2_Mm1t SINE B2 -8 185 2 6 645 1028 130 18 0 chr9 7875956 7876125 -116200047 - B2_Mm2 SINE B2 -9 186 15 6 645 466 245 0 0 chr9 7876121 7876215 -116199957 - B1_Mur2 SINE Alu -32 117 24 6 645 522 258 61 0 chr9 7876317 7876449 -116199723 + B1_Mur1 SINE Alu 2 141 -8 6 645 241 245 75 0 chr9 7876673 7876726 -116199446 - RSINE1 SINE B4 -8 157 101 6 645 1998 234 58 20 chr9 7876730 7877199 -116198973 + RLTR20A2 LTR ERVK 1 476 -102 6 645 402 21 0 0 chr9 7877199 7877246 -116198926 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 645 1998 234 58 20 chr9 7877246 7877333 -116198839 + RLTR20A2 LTR ERVK 477 577 -1 6 645 372 217 48 12 chr9 7877334 7877418 -116198754 - RSINE1 SINE B4 -64 101 15 6 645 417 216 52 43 chr9 7877461 7877577 -116198595 - PB1D10 SINE Alu 0 117 1 6 645 613 265 27 0 chr9 7877577 7877636 -116198536 - ID SINE ID -141 83 21 6 645 766 207 21 0 chr9 7877660 7877805 -116198367 - B1F SINE Alu 0 149 2 6 645 252 0 0 0 chr9 7878563 7878591 -116197581 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 645 522 0 0 0 chr9 7879014 7879072 -116197100 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 6 645 921 112 25 6 chr9 7879072 7879234 -116196938 + (GGGAA)n Simple_repeat Simple_repeat 3 167 0 6 645 423 0 0 0 chr9 7879235 7879282 -116196890 + (CAGGA)n Simple_repeat Simple_repeat 1 47 0 6 645 680 200 37 16 chr9 7879282 7879470 -116196702 - RMER10A LTR ERVL -31 411 220 6 645 562 225 174 61 chr9 7879626 7879839 -116196333 + MTEa LTR MaLR 141 377 -2 6 645 1721 218 68 76 chr9 7880256 7880634 -116195538 + RMER17B LTR ERVK 1 431 -527 6 645 429 20 0 0 chr9 7880634 7880684 -116195488 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 645 1721 216 63 57 chr9 7880684 7881143 -116195029 + RMER17B LTR ERVK 364 908 0 6 645 233 271 68 93 chr9 7881592 7881710 -116194462 - PB1D10 SINE Alu 0 117 3 6 645 268 242 0 0 chr9 7881713 7881779 -116194393 - L1MD LINE L1 -1958 4188 4123 6 645 452 281 14 36 chr9 7881896 7882036 -116194136 - B1F1 SINE Alu -10 139 3 6 645 662 216 26 26 chr9 7882036 7882066 -116194106 - ID SINE ID -143 81 52 6 645 918 244 61 61 chr9 7882098 7882408 -116193764 - MTE2a LTR MaLR -13 366 57 6 645 180 0 0 0 chr9 7882812 7882832 -116193340 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 645 2963 110 63 62 chr9 7882883 7883357 -116192815 + MTB-int LTR MaLR 533 1093 -165 6 645 1200 27 7 33 chr9 7883357 7883508 -116192664 + B1_Mus1 SINE Alu 2 148 0 6 645 297 0 0 0 chr9 7883511 7883544 -116192628 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 645 2963 101 54 66 chr9 7883544 7883711 -116192461 + MTB-int LTR MaLR 952 1098 0 6 645 2895 70 33 15 chr9 7883711 7884104 -116192068 + MTB LTR MaLR 1 400 0 6 645 773 41 0 0 chr9 7884104 7884202 -116191970 + MTB LTR MaLR 303 400 0 6 645 3496 107 11 9 chr9 7884496 7885043 -116191129 - LTRIS2 LTR ERV1 0 564 17 6 645 186 71 0 0 chr9 7885045 7885073 -116191099 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 6 645 384 190 0 0 chr9 7885074 7885174 -116190998 + T-rich Low_complexity Low_complexity 17 116 0 6 645 1158 61 0 0 chr9 7885174 7885321 -116190851 - B1_Mm SINE Alu 0 147 1 6 645 384 190 0 0 chr9 7885321 7885336 -116190836 + T-rich Low_complexity Low_complexity 2 16 0 6 645 405 226 79 124 chr9 7885513 7885690 -116190482 - MTEb LTR MaLR -1 378 210 6 645 463 225 75 0 chr9 7885712 7885832 -116190340 + B3A SINE B2 2 130 -68 6 645 1279 185 59 71 chr9 7886240 7886368 -116189804 - MTD LTR MaLR -85 334 210 6 645 1615 37 11 0 chr9 7886368 7886557 -116189615 - B2_Mm1a SINE B2 -1 192 2 6 645 1279 185 59 71 chr9 7886557 7886766 -116189406 - MTD LTR MaLR -210 209 1 6 645 423 277 87 7 chr9 7886794 7886932 -116189240 - ID_B1 SINE B4 0 224 76 6 645 911 199 242 40 chr9 7887563 7887858 -116188314 + RMER17C-int LTR ERVK 1634 1988 -1250 6 645 857 135 65 0 chr9 7887863 7888033 -116188139 + RMER17C-int LTR ERVK 2170 2350 -888 6 645 948 57 131 54 chr9 7888079 7888247 -116187925 + B2_Mm2 SINE B2 7 187 -8 6 645 2893 167 110 20 chr9 7888247 7888428 -116187744 + RMER17C-int LTR ERVK 2593 2811 -427 6 645 1076 88 0 57 chr9 7888428 7888585 -116187587 - B1_Mus1 SINE Alu 0 148 1 6 645 2893 167 110 20 chr9 7888585 7888996 -116187176 + RMER17C-int LTR ERVK 2812 3238 0 6 645 1238 204 161 22 chr9 7888996 7889169 -116187003 + RMER17C LTR ERVK 1 205 -205 6 645 216 0 0 0 chr9 7889169 7889193 -116186979 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 645 1238 204 161 22 chr9 7889193 7889379 -116186793 + RMER17C LTR ERVK 206 410 0 6 645 891 228 18 68 chr9 7889545 7889766 -116186406 + ID_B1 SINE B4 2 211 -13 6 645 315 161 0 0 chr9 7889778 7889834 -116186338 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 645 234 0 0 0 chr9 7889834 7889860 -116186312 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 645 618 203 62 0 chr9 7889863 7889991 -116186181 + B1_Mur4 SINE Alu 15 150 0 6 645 1095 173 118 140 chr9 7890301 7890623 -116185549 - MTC LTR MaLR 0 421 107 6 645 613 214 0 37 chr9 7890625 7890761 -116185411 + B1_Mur4 SINE Alu 3 133 -17 6 645 4194 83 3 0 chr9 7890744 7891322 -116184850 - LTRIS_Mus LTR ERV1 -7 580 1 6 645 282 371 75 8 chr9 7891395 7891528 -116184644 + RSINE1 SINE B4 12 153 -12 6 645 1252 48 0 0 chr9 7891686 7891833 -116184339 + B1_Mm SINE Alu 1 147 0 6 645 3426 118 16 7 chr9 7891869 7892426 -116183746 + LTRIS2 LTR ERV1 3 564 0 6 645 721 239 29 75 chr9 7892436 7892751 -116183421 + RMER2 LTR ERV1 1 398 -169 6 645 1570 27 11 0 chr9 7892751 7892937 -116183235 + B2_Mm1a SINE B2 2 189 -4 6 645 721 256 37 126 chr9 7892937 7893112 -116183060 + RMER2 LTR ERV1 399 556 -11 6 645 544 249 70 35 chr9 7893200 7893371 -116182801 - B4 SINE B4 -115 177 1 6 645 794 114 10 2 chr9 7893685 7893824 -116182348 - ORR1B1 LTR MaLR 0 394 239 6 645 289 100 0 0 chr9 7893805 7893845 -116182327 + B1_Mur4 SINE Alu 5 44 -106 6 645 2879 114 15 29 chr9 7893867 7894345 -116181827 - RMER16 LTR ERVK -53 480 10 6 645 1966 160 86 5 chr9 7894447 7894830 -116181342 + MTC LTR MaLR 1 414 -7 6 645 2283 115 12 3 chr9 7894830 7895154 -116181018 - ORR1A2 LTR MaLR 0 327 1 6 645 317 346 30 8 chr9 7895199 7895330 -116180842 - ID_B1 SINE B4 -14 210 77 6 645 9296 106 5 1 chr9 7895330 7897455 -116178717 + L1_Mus3 LINE L1 4498 6632 -6 6 645 263 167 0 37 chr9 7897468 7897549 -116178623 + A-rich Low_complexity Low_complexity 1 78 0 6 645 295 322 22 0 chr9 7897565 7897655 -116178517 - ID_B1 SINE B4 -123 101 10 6 645 232 327 19 28 chr9 7897964 7898071 -116178101 - PB1D7 SINE Alu -2 118 13 6 645 224 30 30 0 chr9 7898245 7898278 -116177894 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 645 254 276 128 16 chr9 7898498 7898623 -116177549 - LTR48 LTR ERV1 -69 718 580 6 645 1198 75 0 0 chr9 7899051 7899198 -116176974 + B1_Mus1 SINE Alu 2 148 0 6 645 447 68 0 0 chr9 7899198 7899257 -116176915 + (A)n Simple_repeat Simple_repeat 1 59 0 6 645 265 183 128 5 chr9 7899258 7899369 -116176803 + B3A SINE B2 27 180 -36 6 645 317 235 118 39 chr9 7899526 7899628 -116176544 + PB1D7 SINE Alu 11 120 0 6 645 1118 52 6 13 chr9 7899677 7899833 -116176339 - B2_Mm2 SINE B2 -38 157 3 7 645 183 42 0 0 chr9 7899841 7899865 -116176307 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 645 1224 48 0 0 chr9 7899879 7900025 -116176147 - B1_Mus2 SINE Alu 0 147 2 7 645 385 221 13 13 chr9 7900048 7900126 -116176046 - ID4 SINE ID -2 81 4 7 645 353 295 37 19 chr9 7900134 7900241 -116175931 - PB1D10 SINE Alu -8 109 1 7 645 381 102 33 22 chr9 7900305 7900395 -116175777 + T-rich Low_complexity Low_complexity 2 92 0 7 645 391 139 122 44 chr9 7900634 7900724 -116175448 + PB1D10 SINE Alu 21 117 0 7 645 207 0 0 0 chr9 7900876 7900899 -116175273 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 645 1170 62 7 0 chr9 7900903 7901048 -116175124 - B1_Mus2 SINE Alu 0 147 2 7 645 380 239 52 2 chr9 7901345 7901459 -116174713 - PB1D10 SINE Alu 0 127 1 7 645 243 0 0 0 chr9 7901551 7901578 -116174594 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 645 837 71 158 0 chr9 7901580 7901707 -116174465 - B1_Mus1 SINE Alu 0 148 2 7 645 666 184 32 0 chr9 7901847 7901972 -116174200 - B3 SINE B2 -86 130 2 7 645 288 0 0 0 chr9 7902005 7902037 -116174135 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 645 404 212 12 0 chr9 7902123 7902203 -116173969 + B2_Mm2 SINE B2 9 89 -106 7 645 393 207 0 24 chr9 7902904 7902988 -116173184 + ID4 SINE ID 2 83 0 7 645 234 267 85 110 chr9 7903081 7903199 -116172973 - PB1D10 SINE Alu 0 117 3 7 645 300 324 76 12 chr9 7903281 7903453 -116172719 + ORR1E LTR MaLR 56 238 -121 7 645 561 264 8 0 chr9 7903921 7904046 -116172126 - ID_B1 SINE B4 -8 216 91 7 645 447 254 104 24 chr9 7904308 7904433 -116171739 + RSINE1 SINE B4 3 137 -28 7 645 513 32 0 0 chr9 7904436 7904499 -116171673 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 645 201 39 0 0 chr9 7905287 7905313 -116170859 + (TAG)n Simple_repeat Simple_repeat 1 26 0 7 645 457 244 138 0 chr9 7905313 7905436 -116170736 - B3 SINE B2 -38 178 39 7 645 487 275 94 0 chr9 7905596 7905745 -116170427 + ID_B1 SINE B4 1 163 -61 7 645 356 273 238 0 chr9 7905765 7905906 -116170266 + ID_B1 SINE B4 5 165 -59 7 645 2137 148 75 21 chr9 7905906 7906280 -116169892 + ORR1B1 LTR MaLR 1 394 0 7 645 356 273 238 0 chr9 7906280 7906310 -116169862 + ID_B1 SINE B4 166 216 -8 7 645 351 254 158 0 chr9 7907306 7907420 -116168752 + MLT1A1 LTR MaLR 3 134 -274 7 645 1174 129 45 0 chr9 7907457 7907635 -116168537 - B2_Mm1t SINE B2 -6 187 2 7 645 756 32 0 0 chr9 7908139 7908234 -116167938 + (TC)n Simple_repeat Simple_repeat 1 95 0 7 645 180 0 0 0 chr9 7908235 7908255 -116167917 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 645 879 115 88 0 chr9 7908255 7908403 -116167769 - B2_Mm2 SINE B2 -33 162 2 7 645 241 220 0 0 chr9 7908467 7908517 -116167655 + C-rich Low_complexity Low_complexity 1 50 0 7 645 395 214 78 48 chr9 7908543 7908646 -116167526 - B3 SINE B2 -96 120 15 7 645 2296 89 12 93 chr9 7908772 7909180 -116166992 + RLTR1B LTR ERV1 138 512 0 7 645 273 170 75 0 chr9 7909285 7909338 -116166834 + ID_B1 SINE B4 160 216 -8 7 645 222 324 20 0 chr9 7909489 7909591 -116166581 - L2 LINE L2 -1838 1581 1478 7 645 2417 203 97 54 chr9 7909708 7910360 -116165812 + RMER13A LTR ERVK 1 680 -180 7 645 996 333 62 7 chr9 7910781 7911204 -116164968 - MLT1F LTR MaLR -101 447 2 7 645 270 278 59 25 chr9 7911273 7911391 -116164781 + B3A SINE B2 1 122 -76 7 645 1167 63 0 0 chr9 7911445 7911588 -116164584 - B1_Mm SINE Alu -4 143 1 7 645 207 0 0 0 chr9 7911602 7911625 -116164547 + (T)n Simple_repeat Simple_repeat 1 23 0 7 645 769 68 246 0 chr9 7911625 7911743 -116164429 - B1_Mus1 SINE Alu 0 148 2 7 645 226 218 18 35 chr9 7911867 7911924 -116164248 + ORR1E LTR MaLR 1 56 -303 7 645 2626 47 0 0 chr9 7912383 7912724 -116163448 - ORR1A1 LTR MaLR 0 346 6 7 645 431 299 31 16 chr9 7912932 7913061 -116163111 + B4A SINE B4 71 201 -91 7 645 414 0 0 0 chr9 7913926 7913972 -116162200 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 645 234 0 0 0 chr9 7913972 7913997 -116162175 + (CG)n Simple_repeat Simple_repeat 1 26 0 7 645 180 0 0 0 chr9 7914955 7914975 -116161197 + (T)n Simple_repeat Simple_repeat 1 20 0 7 645 230 286 101 43 chr9 7915250 7915389 -116160783 - RMER4B LTR ERVK -92 493 347 7 645 1414 324 26 49 chr9 7915449 7915679 -116160493 - RodERV21-int LTR ERV1 -202 4789 4572 7 645 1533 48 16 0 chr9 7915679 7915868 -116160304 - B2_Mm2 SINE B2 -2 193 2 7 645 1414 324 26 49 chr9 7915868 7916325 -116159847 - RodERV21-int LTR ERV1 -420 4571 4118 7 645 1498 176 27 30 chr9 7916330 7916698 -116159474 - RMER17C LTR ERVK -43 367 1 7 645 2897 261 47 13 chr9 7916932 7917832 -116158340 - RCHARR1 DNA MER1_type -3 971 42 7 645 730 258 5 5 chr9 7918306 7918493 -116157679 + B3 SINE B2 1 187 -29 7 645 209 186 0 0 chr9 7918493 7918536 -116157636 + (TCTCTG)n Simple_repeat Simple_repeat 3 45 0 7 645 1185 94 60 60 chr9 7918665 7918809 -116157363 + B2_Mm2 SINE B2 1 144 -51 7 645 1176 63 0 0 chr9 7918809 7918951 -116157221 + B1_Mm SINE Alu 1 142 -5 7 645 188 0 74 0 chr9 7918951 7918978 -116157194 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 645 1185 94 60 60 chr9 7918978 7919014 -116157158 + B2_Mm2 SINE B2 145 181 -14 7 645 25484 63 4 1 chr9 7919058 7922301 -116153871 + L1Md_F2 LINE L1 2331 5585 -298 7 645 7677 61 17 6 chr9 7922302 7923286 -116152886 + L1Md_F2 LINE L1 5587 6581 -1 7 645 562 175 61 0 chr9 7923685 7923799 -116152373 - B1_Mur1 SINE Alu -6 143 23 7 645 1345 77 33 0 chr9 7923866 7924047 -116152125 - B2_Mm2 SINE B2 -7 188 2 7 645 777 214 61 118 chr9 7924055 7924240 -116151932 - B3 SINE B2 -1 215 43 7 645 1081 95 0 20 chr9 7924240 7924390 -116151782 - B1_Mus1 SINE Alu 0 148 2 7 645 777 214 61 118 chr9 7924390 7924432 -116151740 - B3 SINE B2 -174 42 1 7 645 502 341 14 0 chr9 7924616 7924754 -116151418 + B3 SINE B2 75 214 -2 7 645 300 277 10 21 chr9 7924762 7924779 -116151393 + (TATG)n Simple_repeat Simple_repeat 1 17 0 7 645 1370 90 5 11 chr9 7924779 7924969 -116151203 - B2_Mm1t SINE B2 -3 190 2 7 645 300 277 10 21 chr9 7924969 7925047 -116151125 + (TATG)n Simple_repeat Simple_repeat 4 80 0 7 645 405 213 146 21 chr9 7925215 7925359 -116150813 + B3 SINE B2 55 216 0 7 645 693 53 0 0 chr9 7925397 7925491 -116150681 + (GGA)n Simple_repeat Simple_repeat 2 95 0 7 645 340 250 13 0 chr9 7926434 7926510 -116149662 - MTEb LTR MaLR -3 376 300 7 645 576 292 25 82 chr9 7926525 7926839 -116149333 - MTEb LTR MaLR -56 323 18 7 645 300 230 58 29 chr9 7927138 7927241 -116148931 - PB1D9 SINE Alu -10 110 5 7 645 308 236 106 26 chr9 7927459 7927572 -116148600 - Lx8 LINE L1 -2 7471 7350 7 645 821 264 170 6 chr9 7927588 7927900 -116148272 - Lx8 LINE L1 -184 7289 6927 7 645 21 0 0 0 chr9 7927927 7927948 -116148224 + AT_rich Low_complexity Low_complexity 1 21 0 7 645 651 270 25 0 chr9 7928014 7928173 -116147999 - B3A SINE B2 -35 163 1 7 645 500 275 111 25 chr9 7928701 7928891 -116147281 + B3A SINE B2 9 215 -1 7 645 357 172 181 39 chr9 7928908 7929035 -116147137 + B1_Mus1 SINE Alu 3 147 -1 7 645 304 255 159 9 chr9 7929099 7929206 -116146966 + RSINE1 SINE B4 14 136 -29 7 645 250 264 233 72 chr9 7929313 7929562 -116146610 - B4A SINE B4 -2 290 2 7 645 265 167 40 53 chr9 7929781 7929857 -116146315 + B4A SINE B4 7 81 -211 7 645 312 250 77 0 chr9 7929907 7930011 -116146161 - PB1 SINE Alu -5 122 11 7 645 237 256 62 37 chr9 7930102 7930183 -116145989 + B3A SINE B2 110 192 -6 7 645 381 183 0 119 chr9 7930302 7930420 -116145752 + MT2B LTR ERVL 161 264 -337 7 645 927 70 0 0 chr9 7930324 7930452 -116145720 + B1_Mus1 SINE Alu 18 145 -3 7 645 404 241 0 0 chr9 7930491 7930574 -116145598 + B1_Mur4 SINE Alu 9 91 -59 7 645 277 127 0 68 chr9 7931133 7931192 -116144980 + B1_Mus2 SINE Alu 93 147 0 7 645 932 25 8 0 chr9 7931299 7931419 -116144753 + B1_Mus2 SINE Alu 27 147 0 7 645 207 69 0 0 chr9 7931620 7931649 -116144523 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 7 645 760 84 244 0 chr9 7931651 7931770 -116144402 - B1_Mus1 SINE Alu 0 148 1 7 645 337 220 87 29 chr9 7936259 7936362 -116139810 + PB1D10 SINE Alu 5 113 -4 7 645 1193 36 0 0 chr9 7938740 7938879 -116137293 + B1_Mus1 SINE Alu 2 140 -8 7 645 270 0 0 0 chr9 7938879 7938909 -116137263 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 645 1256 31 18 0 chr9 7939574 7939737 -116136435 - B2_Mm1a SINE B2 -27 166 1 7 645 314 234 118 65 chr9 7939833 7940002 -116136170 + Charlie4a DNA MER1_type 3 180 -328 7 645 432 291 84 34 chr9 7940071 7940359 -116135813 + Lx7 LINE L1 5469 5784 -516 7 645 652 184 0 0 chr9 7940610 7940724 -116135448 - B1_Mus1 SINE Alu -32 116 3 7 645 273 57 0 0 chr9 7940916 7940951 -116135221 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 645 2440 71 12 6 chr9 7941418 7941744 -116134428 + L1_Mus2 LINE L1 6239 6566 0 7 645 307 169 64 126 chr9 7942067 7942186 -116133986 + B1_Mm SINE Alu 5 111 -9 7 645 393 250 106 0 chr9 7942294 7942343 -116133829 - B3 SINE B2 -87 129 81 7 645 1185 47 0 0 chr9 7942343 7942491 -116133681 + (TA)n Simple_repeat Simple_repeat 2 149 0 7 645 393 250 106 0 chr9 7942491 7942545 -116133627 - B3 SINE B2 -136 80 17 7 645 508 181 114 0 chr9 7943008 7943113 -116133059 - B1_Mur4 SINE Alu -32 118 2 8 645 500 37 11 118 chr9 7943229 7943322 -116132850 - L1Md_F2 LINE L1 0 6582 6500 8 645 308 270 0 75 chr9 7943417 7943431 -116132741 + B4A SINE B4 75 82 -210 8 645 350 251 81 65 chr9 7943431 7943559 -116132613 + PB1D10 SINE Alu 1 118 -31 8 645 684 115 0 0 chr9 7944912 7945016 -116131156 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 8 645 315 0 0 0 chr9 7945017 7945052 -116131120 + (CAGC)n Simple_repeat Simple_repeat 1 35 0 8 645 759 119 17 8 chr9 7945450 7945569 -116130603 - PB1D9 SINE Alu 0 120 1 8 645 411 145 0 0 chr9 7945943 7946005 -116130167 - B1_Mur1 SINE Alu -20 129 68 8 645 1115 50 14 0 chr9 7946260 7946399 -116129773 + B1_Mus2 SINE Alu 1 141 -6 8 645 369 0 0 0 chr9 7946401 7946442 -116129730 + (TA)n Simple_repeat Simple_repeat 2 42 0 8 645 432 264 23 23 chr9 7947355 7947483 -116128689 + B1F2 SINE Alu 9 136 -13 8 645 302 200 129 0 chr9 7947738 7947808 -116128364 + PB1D9 SINE Alu 23 101 -19 8 645 472 319 0 7 chr9 7948489 7948625 -116127547 - ID_B1 SINE B4 -4 220 86 8 645 229 364 0 0 chr9 7948761 7948827 -116127345 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 8 645 324 243 33 83 chr9 7948833 7948954 -116127218 + PB1D10 SINE Alu 1 115 -2 8 645 267 280 13 13 chr9 7949328 7949404 -116126768 + B1_Mus1 SINE Alu 21 96 -52 8 645 1106 58 0 0 chr9 7949524 7949661 -116126511 + B1_Mus1 SINE Alu 2 138 -10 8 645 237 246 78 88 chr9 7949663 7949780 -116126392 + B1F SINE Alu 3 115 -5 8 645 233 260 39 52 chr9 7952108 7952185 -116123987 - ID4_ SINE ID -7 76 1 8 645 387 292 37 44 chr9 7952606 7952742 -116123430 - ID_B1 SINE B4 0 224 90 8 645 302 273 13 13 chr9 7953332 7953410 -116122762 + RSINE1 SINE B4 3 80 -85 8 645 366 23 0 0 chr9 7953449 7953492 -116122680 + (TATG)n Simple_repeat Simple_repeat 3 45 0 8 645 1054 67 20 0 chr9 7953492 7953641 -116122531 - B2_Mm2 SINE B2 -42 153 2 8 645 398 278 27 14 chr9 7953997 7954143 -116122029 - B1F SINE Alu 0 149 2 8 645 679 220 25 6 chr9 7954389 7954549 -116121623 - B3 SINE B2 -25 191 29 8 645 614 241 21 14 chr9 7954603 7954746 -116121426 - B3 SINE B2 -39 177 34 8 645 1051 75 38 0 chr9 7955259 7955418 -116120754 + B2_Mm1t SINE B2 26 190 -3 8 645 698 238 21 47 chr9 7955482 7955672 -116120500 + B3 SINE B2 7 191 -25 8 645 398 278 27 14 chr9 7955919 7956065 -116120107 + B1F SINE Alu 2 149 0 8 645 434 167 13 0 chr9 7956903 7956981 -116119191 + RSINE1 SINE B4 45 123 -42 8 645 1158 75 0 7 chr9 7957083 7957231 -116118941 + B1_Mus1 SINE Alu 2 148 0 8 645 265 153 6 36 chr9 7957605 7957673 -116118499 + B1F SINE Alu 51 142 -7 8 645 273 218 337 0 chr9 7957810 7957911 -116118261 - B1_Mm SINE Alu -10 137 3 8 645 531 168 46 18 chr9 7958871 7958980 -116117192 - RSINE1 SINE B4 -52 113 2 8 645 1441 59 21 0 chr9 7959004 7959190 -116116982 - B2_Mm1a SINE B2 -3 190 1 8 645 277 278 97 73 chr9 7959720 7959844 -116116328 + B4 SINE B4 72 198 -94 8 645 520 215 66 15 chr9 7959747 7959884 -116116288 + B1_Mur1 SINE Alu 6 149 0 8 645 213 216 0 73 chr9 7959898 7959953 -116116219 - B4A SINE B4 -239 53 3 8 645 405 0 0 0 chr9 7960701 7960746 -116115426 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 645 1312 86 27 5 chr9 7963694 7963881 -116112291 + B2_Mm1a SINE B2 2 192 -1 8 645 22 0 0 0 chr9 7964560 7964582 -116111590 + AT_rich Low_complexity Low_complexity 1 22 0 8 645 191 170 21 0 chr9 7965276 7965323 -116110849 + GA-rich Low_complexity Low_complexity 2 49 0 8 645 254 272 24 12 chr9 7965738 7965820 -116110352 - B3A SINE B2 -113 85 3 8 645 1074 163 63 24 chr9 7966759 7966966 -116109206 + B3 SINE B2 1 215 -1 8 645 966 217 173 54 chr9 7966983 7967319 -116108853 - Lx8 LINE L1 -175 7298 6923 8 645 380 289 67 0 chr9 7968418 7968522 -116107650 + RSINE1 SINE B4 4 114 -51 8 645 256 323 0 0 chr9 7968546 7968611 -116107561 + G-rich Low_complexity Low_complexity 4 68 0 8 645 216 229 32 32 chr9 7968656 7968719 -116107453 + B1_Mus2 SINE Alu 28 90 -57 8 645 281 47 23 0 chr9 7969295 7969338 -116106834 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 8 645 231 36 0 0 chr9 7969379 7969407 -116106765 + (CCA)n Simple_repeat Simple_repeat 2 29 0 8 645 274 265 57 57 chr9 7969416 7969540 -116106632 - ID_B1 SINE B4 -8 216 93 8 645 300 170 144 31 chr9 7970141 7970238 -116105934 - Lx9 LINE L1 -1 7643 7536 8 645 269 248 197 0 chr9 7970469 7970586 -116105586 + B1F1 SINE Alu 1 140 -9 8 645 30 0 0 0 chr9 7970904 7970934 -116105238 + AT_rich Low_complexity Low_complexity 1 30 0 8 645 387 0 0 0 chr9 7971116 7971159 -116105013 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 645 526 205 35 9 chr9 7971731 7971844 -116104328 + PB1D9 SINE Alu 4 119 -1 8 645 743 222 103 5 chr9 7972449 7972644 -116103528 + B3 SINE B2 1 214 -2 8 645 712 147 88 7 chr9 7972812 7972949 -116103223 - B1_Mur2 SINE Alu 0 149 2 8 645 405 265 94 14 chr9 7973441 7973579 -116102593 + RSINE1 SINE B4 17 165 0 8 645 475 281 87 6 chr9 7974165 7974326 -116101846 + B4A SINE B4 111 284 -8 8 645 381 224 8 101 chr9 7974539 7974658 -116101514 + MT2B2 LTR ERVL 150 257 -327 8 645 579 202 0 0 chr9 7974554 7974658 -116101514 + B1_Mur2 SINE Alu 1 104 -45 8 645 409 277 55 101 chr9 7974658 7974771 -116101401 + B4 SINE B4 86 292 0 8 645 803 172 49 27 chr9 7974909 7975094 -116101078 + B2_Mm2 SINE B2 1 189 -6 8 645 1119 67 81 43 chr9 7975239 7975425 -116100747 - B2_Mm2 SINE B2 0 195 3 8 645 286 307 112 73 chr9 7975547 7975636 -116100536 + B4 SINE B4 1 186 -106 8 645 398 222 67 0 chr9 7975636 7975726 -116100446 + B1F2 SINE Alu 2 97 -52 8 645 297 219 0 0 chr9 7977170 7977243 -116098929 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 645 557 203 67 15 chr9 7977244 7977379 -116098793 + B1F SINE Alu 1 142 -7 8 645 21 36 0 0 chr9 7978166 7978194 -116097978 + AT_rich Low_complexity Low_complexity 1 28 0 8 645 813 179 0 46 chr9 7978196 7978348 -116097824 + B1_Mur3 SINE Alu 5 149 0 8 645 391 209 103 103 chr9 7978653 7978818 -116097354 - B3A SINE B2 0 198 34 8 645 449 271 164 20 chr9 7979604 7979900 -116096272 + L1M3 LINE L1 5484 5823 -351 8 645 359 299 134 0 chr9 7979903 7980037 -116096135 + RSINE1 SINE B4 4 155 -10 8 645 598 146 29 58 chr9 7981319 7981457 -116094715 + B1_Mm SINE Alu 13 146 -1 8 645 228 111 0 0 chr9 7981460 7981496 -116094676 + (CAAG)n Simple_repeat Simple_repeat 1 36 0 8 645 25 31 0 0 chr9 7981583 7981615 -116094557 + AT_rich Low_complexity Low_complexity 1 32 0 8 645 1064 131 16 69 chr9 7981676 7981864 -116094308 + B2_Mm1t SINE B2 2 179 -14 8 645 290 103 0 33 chr9 7981950 7982010 -116094162 + B2_Mm2 SINE B2 137 194 -1 8 645 23 0 0 0 chr9 7982015 7982038 -116094134 + GC_rich Low_complexity Low_complexity 1 23 0 8 645 1166 113 49 0 chr9 7982046 7982231 -116093941 + B2_Mm2 SINE B2 2 195 0 8 645 365 253 62 21 chr9 7982233 7982330 -116093842 - B1F SINE Alu -47 102 2 8 645 374 243 9 72 chr9 7983269 7983380 -116092792 + B1F SINE Alu 45 148 -1 8 645 180 0 0 0 chr9 7983660 7983680 -116092492 + (GGGAGA)n Simple_repeat Simple_repeat 1 20 0 8 645 537 241 0 8 chr9 7984015 7984132 -116092040 + PB1D7 SINE Alu 5 120 0 8 645 216 0 0 0 chr9 7984132 7984156 -116092016 + (A)n Simple_repeat Simple_repeat 1 24 0 8 645 536 200 53 46 chr9 7985859 7985990 -116090182 - B1_Mur3 SINE Alu -16 133 2 8 645 1086 57 43 0 chr9 7986213 7986353 -116089819 + B1_Mus1 SINE Alu 2 147 -1 8 645 750 203 22 0 chr9 7986518 7986656 -116089516 + B1_Mus2 SINE Alu 5 145 -2 8 645 252 0 0 0 chr9 7986679 7986707 -116089465 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 645 838 166 7 7 chr9 7987749 7987895 -116088277 - B1_Mur4 SINE Alu 0 150 5 8 645 499 246 21 56 chr9 7987957 7988099 -116088073 + B4 SINE B4 11 147 -145 8 645 245 233 135 14 chr9 7988355 7988429 -116087743 + PB1D10 SINE Alu 1 83 -34 8 645 286 228 25 158 chr9 7988633 7988753 -116087419 + PB1D10 SINE Alu 7 110 -7 8 645 1276 27 0 0 chr9 7988758 7988905 -116087267 + B1_Mus2 SINE Alu 1 147 0 8 645 284 275 8 92 chr9 7988931 7989051 -116087121 + PB1D10 SINE Alu 4 113 -4 8 645 773 273 57 0 chr9 7989060 7989254 -116086918 + B3 SINE B2 3 207 -9 8 645 248 303 0 38 chr9 7989414 7989493 -116086679 + PB1D10 SINE Alu 40 115 -2 8 645 361 200 0 34 chr9 7989552 7989640 -116086532 + ID_B1 SINE B4 114 198 -26 8 645 266 349 0 5 chr9 7989688 7989774 -116086398 + B1F SINE Alu 1 83 -66 8 645 397 232 199 10 chr9 7989817 7990013 -116086159 + ORR1E LTR MaLR 5 237 -122 9 645 325 256 36 12 chr9 7990826 7990909 -116085263 - RSINE1 SINE B4 -3 162 78 9 645 376 153 247 0 chr9 7991282 7991367 -116084805 + B1_Mus2 SINE Alu 42 147 0 9 645 1695 31 0 0 chr9 7991817 7992010 -116084162 + B2_Mm1a SINE B2 1 193 0 9 645 253 257 168 35 chr9 7992072 7992185 -116083987 + B4 SINE B4 56 183 -109 9 645 474 271 44 15 chr9 7992585 7992720 -116083452 + B1F SINE Alu 4 142 -7 9 645 390 219 32 2 chr9 7992724 7992815 -116083357 + B1_Mus1 SINE Alu 14 108 -41 9 645 279 272 18 55 chr9 7992848 7992957 -116083215 + RSINE1 SINE B4 29 133 -32 9 645 480 207 46 30 chr9 7993419 7993538 -116082634 - B1F1 SINE Alu -34 113 2 9 645 996 65 0 28 chr9 7993567 7993710 -116082462 - B1_Mus1 SINE Alu 0 148 10 9 645 296 234 34 165 chr9 7993788 7994024 -116082148 + B3 SINE B2 2 206 -10 9 645 503 87 32 11 chr9 7994573 7994666 -116081506 + L1Md_F3 LINE L1 6490 6584 0 9 645 830 79 153 30 chr9 7994699 7994830 -116081342 + B1_Mm SINE Alu 1 147 0 9 645 180 0 0 0 chr9 7994830 7994850 -116081322 + (A)n Simple_repeat Simple_repeat 1 20 0 9 646 1236 34 7 0 chr9 7995405 7995551 -116080621 + B1_Mus2 SINE Alu 1 147 0 9 646 219 295 124 54 chr9 7996038 7996167 -116080005 + ID_B1 SINE B4 82 219 -5 9 646 562 213 48 32 chr9 7996391 7996517 -116079655 + B1_Mus1 SINE Alu 12 139 -9 9 646 444 211 0 0 chr9 7996526 7996678 -116079494 + (CA)n Simple_repeat Simple_repeat 2 153 0 9 646 280 190 148 25 chr9 7996920 7997001 -116079171 - PB1D9 SINE Alu 0 120 30 9 646 270 0 0 0 chr9 7997415 7997445 -116078727 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 646 1159 62 0 7 chr9 7997463 7997609 -116078563 + B1_Mm SINE Alu 1 145 -2 9 646 321 27 95 14 chr9 7997610 7997684 -116078488 + (CAAAA)n Simple_repeat Simple_repeat 1 80 0 9 646 1350 57 57 0 chr9 7999359 7999535 -116076637 + B2_Mm1t SINE B2 2 187 -6 9 646 261 0 0 0 chr9 8000000 8000029 -116076143 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 1 646 328 270 17 43 chr9 8000132 8000248 -116075924 + ID_B1 SINE B4 80 192 -32 2 646 498 153 198 0 chr9 8000147 8000258 -116075914 + B1_Mus1 SINE Alu 16 148 0 3 646 270 0 0 0 chr9 8000953 8000983 -116075189 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 646 180 0 0 0 chr9 8001056 8001076 -116075096 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 5 646 226 196 0 0 chr9 8001196 8001221 -116074951 + polypurine Low_complexity Low_complexity 2 26 0 6 646 276 100 0 0 chr9 8001221 8001261 -116074911 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 646 226 196 0 0 chr9 8001261 8001291 -116074881 + polypurine Low_complexity Low_complexity 27 56 0 8 646 29 47 0 0 chr9 8004281 8004324 -116071848 + GC_rich Low_complexity Low_complexity 1 43 0 9 646 204 40 0 0 chr9 8004484 8004509 -116071663 + (TCCCC)n Simple_repeat Simple_repeat 3 27 0 1 646 22 0 0 0 chr9 8004687 8004709 -116071463 + GC_rich Low_complexity Low_complexity 1 22 0 1 646 241 255 10 10 chr9 8005217 8005316 -116070856 + CT-rich Low_complexity Low_complexity 4 102 0 1 646 317 221 52 0 chr9 8005332 8005409 -116070763 - RSINE1 SINE B4 -31 134 54 1 646 433 340 0 0 chr9 8005443 8005584 -116070588 - ID_B1 SINE B4 0 224 84 1 646 656 203 144 32 chr9 8005872 8006060 -116070112 - B3 SINE B2 -7 209 1 1 646 293 227 67 22 chr9 8006091 8006181 -116069991 - L1MB8 LINE L1 -8 6170 6077 1 646 292 287 191 44 chr9 8006526 8006730 -116069442 + MIR SINE MIR 28 261 -1 1 646 359 215 0 0 chr9 8006889 8006954 -116069218 + B1_Mur4 SINE Alu 4 68 -82 1 646 282 278 65 65 chr9 8006954 8006979 -116069193 + MT2B LTR ERVL 168 257 -344 1 646 462 231 146 0 chr9 8006979 8007109 -116069063 + B1_Mur1 SINE Alu 1 149 0 2 646 415 73 0 0 chr9 8007487 8007542 -116068630 - ORR1A1 LTR MaLR 0 329 275 2 646 820 75 96 7 chr9 8007563 8007698 -116068474 - B1_Mus2 SINE Alu 0 147 1 2 646 563 171 25 8 chr9 8007702 8007820 -116068352 - ORR1A1 LTR MaLR -226 120 1 2 646 425 269 18 18 chr9 8007968 8008078 -116068094 - PB1D10 SINE Alu -3 114 5 2 646 386 218 19 65 chr9 8008115 8008223 -116067949 + B3 SINE B2 1 103 -113 2 646 391 257 75 40 chr9 8008284 8008458 -116067714 - MamRep4096 DNA hAT? -133 293 114 2 646 639 226 8 0 chr9 8008466 8008599 -116067573 + B1F SINE Alu 15 148 -1 2 646 461 264 64 7 chr9 8008615 8008756 -116067416 + B1F SINE Alu 1 149 0 2 646 885 129 7 39 chr9 8008765 8008918 -116067254 + B1_Mus1 SINE Alu 1 148 0 2 646 778 109 8 8 chr9 8008980 8009109 -116067063 + (GAA)n Simple_repeat Simple_repeat 2 130 0 2 646 989 39 0 0 chr9 8009613 8009741 -116066431 - B1_Mus2 SINE Alu 0 147 20 3 646 3001 47 53 0 chr9 8009794 8010174 -116065998 + MTB LTR MaLR 1 400 0 3 646 480 132 0 0 chr9 8010238 8010321 -116065851 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 646 492 305 56 26 chr9 8010624 8010893 -116065279 + L1_Rod LINE L1 5447 5723 -124 3 646 267 261 125 0 chr9 8010970 8011058 -116065114 - PB1D7 SINE Alu -8 112 14 3 646 392 272 0 0 chr9 8011124 8011205 -116064967 + ID4 SINE ID 3 83 0 3 646 1130 82 0 0 chr9 8011285 8011431 -116064741 - B1_Mus2 SINE Alu 0 147 2 3 646 268 230 0 108 chr9 8011807 8011890 -116064282 - PB1D7 SINE Alu -6 114 41 3 646 1197 68 0 0 chr9 8012077 8012223 -116063949 + B1_Mm SINE Alu 1 146 -1 3 646 652 233 0 0 chr9 8012301 8012430 -116063742 - B1_Mur2 SINE Alu -20 129 1 3 646 952 252 15 0 chr9 8012528 8012734 -116063438 + B3 SINE B2 2 210 -6 4 646 23 54 0 0 chr9 8012735 8012772 -116063400 + AT_rich Low_complexity Low_complexity 1 37 0 4 646 375 246 143 116 chr9 8012786 8012975 -116063197 + B3A SINE B2 2 195 -3 4 646 188 86 29 0 chr9 8012975 8013010 -116063162 + (TTA)n Simple_repeat Simple_repeat 1 36 0 4 646 711 191 29 0 chr9 8013011 8013147 -116063025 - B1_Mur4 SINE Alu -10 140 1 4 646 1269 92 54 0 chr9 8013163 8013347 -116062825 + B2_Mm2 SINE B2 1 194 -1 4 646 425 212 0 0 chr9 8014084 8014164 -116062008 + B1F2 SINE Alu 1 80 -69 4 646 224 216 20 0 chr9 8015005 8015056 -116061116 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 646 279 0 0 0 chr9 8015104 8015135 -116061037 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 646 1104 93 0 0 chr9 8015141 8015281 -116060891 - B1_Mm SINE Alu -5 142 3 4 646 555 216 124 57 chr9 8015898 8016075 -116060097 + B3A SINE B2 2 190 -8 5 646 23 0 0 0 chr9 8016079 8016102 -116060070 + AT_rich Low_complexity Low_complexity 1 23 0 5 646 1208 54 0 0 chr9 8016161 8016309 -116059863 - B1_Mus1 SINE Alu 0 148 1 5 646 614 278 28 0 chr9 8016348 8016528 -116059644 - B3A SINE B2 -13 185 1 5 646 624 129 0 41 chr9 8016740 8016861 -116059311 - B1_Mur4 SINE Alu 0 150 35 5 646 453 206 146 10 chr9 8016865 8016968 -116059204 - PB1D10 SINE Alu 0 117 1 5 646 1153 88 0 0 chr9 8017048 8017195 -116058977 + B1_Mus2 SINE Alu 1 147 0 5 646 195 129 0 0 chr9 8017195 8017226 -116058946 + (A)n Simple_repeat Simple_repeat 1 31 0 5 646 355 272 12 0 chr9 8017518 8017599 -116058573 - ID4_ SINE ID 0 83 2 5 646 206 118 0 0 chr9 8017850 8017884 -116058288 + (C)n Simple_repeat Simple_repeat 1 34 0 5 646 567 43 0 0 chr9 8018086 8018156 -116058016 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 6 646 1101 76 14 0 chr9 8018156 8018300 -116057872 - B1_Mus1 SINE Alu -2 146 1 6 646 285 260 368 6 chr9 8018478 8018639 -116057533 - ID_B1 SINE B4 -3 221 3 6 646 1248 41 0 0 chr9 8019385 8019531 -116056641 + B1_Mus1 SINE Alu 1 146 -2 6 646 194 0 39 0 chr9 8019531 8019557 -116056615 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 646 270 246 246 0 chr9 8019803 8019913 -116056259 + B1F2 SINE Alu 9 145 -4 6 646 276 30 0 0 chr9 8019925 8019958 -116056214 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 646 1303 93 22 11 chr9 8020037 8020221 -116055951 + B2_Mm2 SINE B2 1 186 -9 6 646 385 261 224 0 chr9 8020251 8020416 -116055756 + B3 SINE B2 1 202 -14 6 646 197 33 0 32 chr9 8020426 8020457 -116055715 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 6 646 342 125 14 18 chr9 8020466 8020532 -116055640 - B2_Mm2 SINE B2 -82 116 46 7 646 1285 80 34 0 chr9 8020610 8020785 -116055387 - B2_Mm2 SINE B2 -14 181 1 7 646 210 71 0 0 chr9 8020963 8020991 -116055181 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 646 216 377 90 0 chr9 8021064 8021186 -116054986 - MIR SINE MIR -76 186 54 7 646 366 263 0 0 chr9 8021201 8021277 -116054895 + ID_B1 SINE B4 91 166 -58 7 646 622 232 107 25 chr9 8021476 8021635 -116054537 - B3 SINE B2 -22 173 2 7 646 638 156 28 1 chr9 8021735 8021862 -116054310 - B1_Mur3 SINE Alu -7 142 14 7 646 463 262 26 66 chr9 8021986 8022137 -116054035 + ID_B1 SINE B4 80 224 0 7 646 220 307 39 39 chr9 8022614 8022692 -116053480 + B4A SINE B4 67 144 -148 7 646 317 253 67 0 chr9 8022633 8022708 -116053464 + B1F1 SINE Alu 1 80 -69 7 646 25 51 0 0 chr9 8022732 8022771 -116053401 + AT_rich Low_complexity Low_complexity 1 39 0 8 646 375 183 158 0 chr9 8022909 8022991 -116053181 - B1F SINE Alu -54 95 1 8 646 322 312 11 0 chr9 8023022 8023115 -116053057 - PB1D10 SINE Alu -10 107 14 8 646 949 266 118 23 chr9 8023197 8023544 -116052628 + MTD LTR MaLR 19 398 -21 8 646 398 157 11 0 chr9 8023564 8023653 -116052519 + MTD-int LTR MaLR 1 90 -1168 8 646 607 243 87 11 chr9 8024008 8024191 -116051981 + B3A SINE B2 1 197 -1 8 646 445 271 7 15 chr9 8024690 8024825 -116051347 - RSINE1 SINE B4 -25 140 7 8 646 374 237 10 10 chr9 8024834 8024932 -116051240 - B1_Mur2 SINE Alu -34 115 18 8 646 791 271 24 5 chr9 8024971 8025179 -116050993 - B3 SINE B2 0 216 5 8 646 295 228 191 38 chr9 8025584 8025689 -116050483 + B1F SINE Alu 28 148 -1 8 646 257 273 65 0 chr9 8026360 8026437 -116049735 + ID_B1 SINE B4 87 168 -56 8 646 548 192 75 30 chr9 8026608 8026742 -116049430 - B1F2 SINE Alu 0 149 10 9 646 273 329 66 73 chr9 8026613 8026764 -116049408 - B4A SINE B4 -72 220 71 9 646 291 54 0 0 chr9 8027327 8027364 -116048808 + (T)n Simple_repeat Simple_repeat 1 37 0 9 646 1133 68 0 13 chr9 8027364 8027513 -116048659 - B1_Mus1 SINE Alu 0 148 2 9 646 4481 63 0 0 chr9 8027554 8028106 -116048066 + L1_Mus1 LINE L1 6016 6567 0 9 646 450 252 68 61 chr9 8028121 8028269 -116047903 - B3A SINE B2 -2 196 48 9 646 674 206 57 0 chr9 8028296 8028437 -116047735 - B1_Mur2 SINE Alu 0 149 1 9 646 414 198 83 0 chr9 8028682 8028778 -116047394 + B3A SINE B2 15 118 -80 9 646 323 114 29 0 chr9 8028831 8028901 -116047271 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 9 646 243 146 0 0 chr9 8028893 8028934 -116047238 + (TTCTCC)n Simple_repeat Simple_repeat 5 45 0 9 646 664 189 0 43 chr9 8028939 8029077 -116047095 - B1_Mus2 SINE Alu 0 147 16 1 646 224 77 26 0 chr9 8029429 8029468 -116046704 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 646 332 59 20 0 chr9 8029722 8029773 -116046399 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 646 224 77 26 0 chr9 8029847 8029886 -116046286 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 646 337 54 36 0 chr9 8029912 8029968 -116046204 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 646 242 73 24 0 chr9 8030047 8030088 -116046084 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 646 314 61 20 0 chr9 8030342 8030391 -116045781 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 646 224 77 26 0 chr9 8030465 8030504 -116045668 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 646 373 50 33 0 chr9 8030530 8030590 -116045582 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 646 242 73 24 0 chr9 8030669 8030710 -116045462 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 646 676 275 33 0 chr9 8030724 8030906 -116045266 - ID_B1 SINE B4 -12 212 25 1 646 659 241 39 45 chr9 8031165 8031343 -116044829 + B3A SINE B2 5 181 -17 1 646 355 210 25 0 chr9 8031353 8031434 -116044738 + PB1D9 SINE Alu 38 120 0 1 646 3462 28 3 0 chr9 8031472 8031864 -116044308 - MTA_Mm LTR MaLR 0 396 4 1 646 669 25 0 0 chr9 8031864 8031943 -116044229 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 646 440 270 34 51 chr9 8031960 8032077 -116044095 + RSINE1 SINE B4 3 117 -48 1 646 267 256 267 25 chr9 8032110 8032230 -116043942 + B1F2 SINE Alu 1 149 0 1 646 582 136 133 23 chr9 8032545 8032673 -116043499 + B1_Mur4 SINE Alu 9 150 0 1 646 198 91 0 0 chr9 8032675 8032708 -116043464 + (A)n Simple_repeat Simple_repeat 1 33 0 1 646 566 147 0 21 chr9 8033808 8033905 -116042267 + B1_Mus2 SINE Alu 12 106 -41 1 646 225 0 0 0 chr9 8033907 8033932 -116042240 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 1 646 285 378 46 36 chr9 8033933 8034128 -116042044 - MLT1-int LTR MaLR -235 1136 940 1 646 341 259 12 0 chr9 8034364 8034445 -116041727 - B3A SINE B2 -105 93 12 1 646 607 303 28 14 chr9 8034597 8034811 -116041361 - MLT1-int LTR MaLR -628 743 527 1 646 643 268 46 32 chr9 8034812 8035028 -116041144 + ID_B1 SINE B4 1 219 -5 1 646 360 305 142 0 chr9 8035213 8035354 -116040818 + B3A SINE B2 2 162 -36 1 646 180 0 0 0 chr9 8035356 8035376 -116040796 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 646 832 259 148 71 chr9 8035697 8036076 -116040096 + Lx8 LINE L1 7062 7469 -4 1 646 930 41 0 0 chr9 8036085 8036206 -116039966 - B1_Mus1 SINE Alu 0 148 28 1 646 333 0 0 0 chr9 8036458 8036495 -116039677 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 646 466 286 66 12 chr9 8036811 8036977 -116039195 - B3A SINE B2 -16 182 8 1 646 387 225 81 99 chr9 8036994 8037153 -116039019 - ID_B1 SINE B4 -41 183 34 1 646 261 325 25 0 chr9 8037624 8037704 -116038468 - ID4 SINE ID 0 83 2 1 646 241 311 88 15 chr9 8037961 8038098 -116038074 - B1F SINE Alu -2 147 1 1 646 1377 87 22 0 chr9 8038148 8038332 -116037840 - B2_Mm2 SINE B2 -7 188 1 1 646 449 250 9 0 chr9 8038332 8038440 -116037732 - B3 SINE B2 -104 112 4 1 646 280 109 82 98 chr9 8038616 8038677 -116037495 - 4.5SRNA scRNA scRNA -34 60 1 1 646 385 300 23 91 chr9 8038730 8038862 -116037310 + RSINE1 SINE B4 43 165 0 1 646 507 78 0 0 chr9 8038867 8038944 -116037228 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 646 25 51 0 0 chr9 8039106 8039145 -116037027 + AT_rich Low_complexity Low_complexity 1 39 0 1 646 212 322 17 17 chr9 8040390 8040450 -116035722 - FLAM_A SINE Alu -234 61 2 1 646 550 193 92 0 chr9 8040908 8041017 -116035155 + PB1D9 SINE Alu 1 119 -1 1 646 227 237 68 0 chr9 8041883 8041942 -116034230 - MARNA DNA Mariner -236 350 288 1 646 230 298 96 0 chr9 8042017 8042121 -116034051 + PB1 SINE Alu 10 123 -4 1 646 333 204 0 0 chr9 8042194 8042274 -116033898 + B1_Mur4 SINE Alu 34 113 -7 1 646 232 231 62 0 chr9 8043504 8043569 -116032603 - L1M5 LINE L1 -419 5745 5677 1 646 824 218 96 5 chr9 8043602 8043800 -116032372 - B3 SINE B2 0 216 1 1 646 1759 179 113 5 chr9 8043845 8044215 -116031957 - MTC LTR MaLR -8 413 4 1 646 4463 178 86 16 chr9 8044450 8044554 -116031618 - MTC-int LTR MaLR -3 1255 1154 1 646 1176 55 0 14 chr9 8044554 8044692 -116031480 + B1_Mus2 SINE Alu 1 138 -9 1 646 234 0 0 0 chr9 8044692 8044718 -116031454 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 646 4463 178 86 16 chr9 8044727 8045578 -116030594 - MTC-int LTR MaLR -105 1153 231 1 646 378 0 0 0 chr9 8045578 8045620 -116030552 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1 646 4463 178 86 16 chr9 8045620 8045672 -116030500 - MTC-int LTR MaLR -1028 230 177 1 646 347 89 18 0 chr9 8045699 8045755 -116030417 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 646 791 209 6 17 chr9 8045904 8046079 -116030093 - MTC-int LTR MaLR -1068 190 18 1 646 1819 144 169 46 chr9 8046091 8046189 -116029983 - MTC LTR MaLR 0 421 338 1 646 1405 86 43 0 chr9 8046189 8046376 -116029796 - B2_Mm2 SINE B2 0 195 1 1 646 1391 62 17 6 chr9 8046376 8046553 -116029619 - B2_Mm2 SINE B2 -15 180 2 1 646 1819 144 169 46 chr9 8046553 8046825 -116029347 - MTC LTR MaLR -84 337 5 1 646 349 296 0 40 chr9 8047053 8047179 -116028993 - B1F SINE Alu -33 116 1 1 646 536 267 7 7 chr9 8047257 8047393 -116028779 + ID_B1 SINE B4 86 221 -3 1 646 708 189 41 20 chr9 8047512 8047525 -116028647 - B1_Mur3 SINE Alu 0 149 139 1 646 207 0 0 0 chr9 8047525 8047548 -116028624 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1 646 708 189 41 20 chr9 8047548 8047680 -116028492 - B1_Mur3 SINE Alu -11 138 1 1 646 1372 97 16 0 chr9 8047700 8047886 -116028286 - B2_Mm2 SINE B2 -5 190 2 1 646 483 271 114 0 chr9 8047937 8048077 -116028095 - RSINE1 SINE B4 -9 156 1 1 646 4403 16 4 12 chr9 8048217 8048714 -116027458 + MT2_Mm LTR ERVL 1 493 0 1 646 48505 14 6 0 chr9 8048714 8054040 -116022132 + MERVL-int LTR ERVL 1 5360 -125 1 646 331 191 46 35 chr9 8054040 8054127 -116022045 + ORR1A3-int LTR MaLR 553 640 -1323 1 646 321 0 0 0 chr9 8054127 8054165 -116022007 + MERVL-int LTR ERVL 5448 5485 0 1 646 4403 16 4 12 chr9 8054165 8054662 -116021510 + MT2_Mm LTR ERVL 1 493 0 1 646 237 161 45 22 chr9 8054704 8054793 -116021379 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 646 230 219 0 0 chr9 8055466 8055507 -116020665 - RSINE1 SINE B4 -122 43 3 1 646 467 279 14 41 chr9 8055742 8055888 -116020284 - ID_B1 SINE B4 0 224 83 1 646 2756 213 87 71 chr9 8056002 8056392 -116019780 + Lx7 LINE L1 6790 7235 -461 1 646 1322 94 5 20 chr9 8056392 8056588 -116019584 - B2_Mm2 SINE B2 -2 193 1 1 646 2447 213 88 70 chr9 8056588 8056743 -116019429 + Lx7 LINE L1 7236 7371 -325 1 646 294 29 0 0 chr9 8056743 8056778 -116019394 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 1 646 2447 213 88 70 chr9 8056778 8056828 -116019344 + Lx7 LINE L1 7372 7397 -299 1 646 203 0 37 0 chr9 8056828 8056855 -116019317 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 646 2447 213 88 70 chr9 8056855 8057030 -116019142 + Lx7 LINE L1 7398 7574 -122 1 646 770 78 0 0 chr9 8057047 8057149 -116019023 - B1_Mus2 SINE Alu 0 147 46 1 646 337 209 0 71 chr9 8057149 8057247 -116018925 + Lx6 LINE L1 7366 7456 -4 1 646 1474 68 5 0 chr9 8057249 8057439 -116018733 + B2_Mm1t SINE B2 1 191 -2 1 646 187 56 54 27 chr9 8057812 8057849 -116018323 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1 646 741 235 8 0 chr9 8057849 8057981 -116018191 - ID_B1 SINE B4 -1 223 91 1 646 180 0 0 0 chr9 8058499 8058519 -116017653 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 646 684 107 0 0 chr9 8058835 8058938 -116017234 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1 646 372 290 21 14 chr9 8058968 8059108 -116017064 + GA-rich Low_complexity Low_complexity 1 141 0 1 646 337 205 54 43 chr9 8059238 8059330 -116016842 + MIR SINE MIR 170 262 0 1 646 241 286 14 0 chr9 8059471 8059541 -116016631 + ID4_ SINE ID 3 73 -10 1 646 533 206 45 36 chr9 8059600 8059711 -116016461 - PB1D7 SINE Alu -8 112 1 1 646 1010 209 70 29 chr9 8060138 8060380 -116015792 + ORR1D1 LTR MaLR 123 374 0 1 646 217 314 86 0 chr9 8060608 8060623 -116015549 + B4A SINE B4 68 88 -204 1 646 231 300 33 16 chr9 8060623 8060684 -116015488 + B1F SINE Alu 2 63 -86 1 646 385 318 0 72 chr9 8060711 8060730 -116015442 + ID SINE ID 69 77 -147 1 646 513 285 0 8 chr9 8060730 8060854 -116015318 + B1F2 SINE Alu 1 123 -26 1 646 815 171 8 0 chr9 8061308 8061437 -116014735 + B3 SINE B2 2 131 -85 1 646 272 232 42 0 chr9 8061658 8061753 -116014419 + L1M5 LINE L1 5334 5432 -747 1 646 4945 134 88 6 chr9 8061867 8062705 -116013467 - Lx4B LINE L1 -9 7049 6143 1 646 243 0 0 0 chr9 8062748 8062775 -116013397 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 646 452 266 53 9 chr9 8062786 8062900 -116013272 - RSINE1 SINE B4 -36 129 11 1 646 338 203 16 0 chr9 8062916 8062980 -116013192 - PB1D7 SINE Alu -29 91 27 1 646 410 260 120 21 chr9 8063107 8063390 -116012782 + L1MD LINE L1 4876 5186 -960 1 646 740 331 38 38 chr9 8063479 8063696 -116012476 - B4A SINE B4 -2 290 78 1 646 2946 77 15 0 chr9 8063696 8064087 -116012085 - MTB LTR MaLR 0 400 4 1 646 740 331 38 38 chr9 8064087 8064158 -116012014 - B4A SINE B4 -215 77 2 1 646 256 323 78 39 chr9 8064195 8064266 -116011906 - B4A SINE B4 -175 117 45 1 646 4845 97 13 34 chr9 8064266 8065032 -116011140 + RMER17A LTR ERVK 1 750 -1 1 646 256 323 78 39 chr9 8065032 8065056 -116011116 - B4A SINE B4 -248 44 18 1 646 461 194 31 0 chr9 8065056 8065147 -116011025 + MTC LTR MaLR 1 94 -327 1 646 2919 65 3 3 chr9 8065147 8065532 -116010640 + L1Md_F2 LINE L1 6198 6582 0 1 646 4617 50 0 0 chr9 8065538 8066136 -116010036 + L1Md_F3 LINE L1 4987 5584 -299 1 646 8501 22 2 2 chr9 8066138 8067136 -116009036 + L1Md_F3 LINE L1 5587 6584 0 1 646 1911 176 21 24 chr9 8067136 8067474 -116008698 + MTC LTR MaLR 85 421 0 1 646 376 215 12 25 chr9 8067496 8067577 -116008595 + L3 LINE CR1 3521 3600 -889 1 646 1008 265 15 0 chr9 8067983 8068183 -116007989 - ID_B1 SINE B4 -5 219 17 1 646 590 211 30 30 chr9 8068224 8068356 -116007816 + B3A SINE B2 3 134 -64 1 646 2101 197 36 9 chr9 8068390 8068810 -116007362 - BGLII_B LTR ERVK -10 431 1 1 646 504 48 0 0 chr9 8068841 8068904 -116007268 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 646 731 148 84 72 chr9 8069886 8070053 -116006119 + B2_Mm2 SINE B2 18 186 -9 2 646 1158 82 0 0 chr9 8070160 8070307 -116005865 - B1_Mus1 SINE Alu 0 148 2 2 646 441 0 0 0 chr9 8070627 8070676 -116005496 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 646 278 132 19 0 chr9 8070676 8070729 -116005443 + GA-rich Low_complexity Low_complexity 1 54 0 2 646 427 271 34 8 chr9 8071160 8071279 -116004893 - B3A SINE B2 -11 187 66 2 646 333 296 34 0 chr9 8071296 8071384 -116004788 + RSINE1 SINE B4 56 146 -19 2 646 284 296 28 60 chr9 8071899 8072036 -116004136 + RSINE1 SINE B4 3 131 -161 2 646 1744 118 99 57 chr9 8072036 8072350 -116003822 - ORR1A4 LTR MaLR -2 327 1 2 646 260 329 43 94 chr9 8072350 8072455 -116003717 + B4A SINE B4 132 232 -60 2 646 1911 218 55 134 chr9 8072684 8073634 -116002538 - RMER1B Other Other -13 1053 179 2 646 214 314 107 41 chr9 8073645 8073841 -116002331 + L2 LINE L2 2407 2615 -804 2 646 2814 132 176 28 chr9 8074093 8075137 -116001035 + RLTR19-int LTR ERVK 3680 4878 -1259 2 646 1022 169 64 39 chr9 8075123 8075357 -116000815 + RLTR19-int LTR ERVK 4802 5041 -1096 2 646 562 202 119 16 chr9 8075357 8075483 -116000689 + RLTR19-int LTR ERVK 5472 5610 -527 2 646 861 212 38 10 chr9 8075656 8075865 -116000307 + RLTR19-int LTR ERVK 5847 6061 -76 2 646 655 170 18 18 chr9 8075884 8075998 -116000174 - B1_Mur2 SINE Alu -13 136 23 2 646 311 326 14 70 chr9 8075998 8076026 -116000146 - ID_B1 SINE B4 -13 211 78 2 646 573 42 0 0 chr9 8076068 8076140 -116000032 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 2 646 1173 75 0 0 chr9 8076165 8076312 -115999860 - B1_Mus2 SINE Alu 0 147 1 2 646 696 227 138 5 chr9 8077259 8077454 -115998718 - B4A SINE B4 -71 221 1 2 646 292 240 104 19 chr9 8077472 8077578 -115998594 + PB1D10 SINE Alu 1 115 -2 2 646 27 49 0 0 chr9 8077710 8077751 -115998421 + AT_rich Low_complexity Low_complexity 1 41 0 2 646 1070 221 23 16 chr9 8078175 8078432 -115997740 + Lx6 LINE L1 7193 7451 -9 2 646 838 184 7 0 chr9 8078442 8078589 -115997583 + B1_Mus1 SINE Alu 1 148 0 2 646 365 311 102 85 chr9 8078610 8078905 -115997267 - Charlie5 DNA MER1_type -1251 1373 1074 2 646 911 206 74 20 chr9 8079219 8079422 -115996750 - B3 SINE B2 0 216 3 2 646 716 119 39 16 chr9 8079759 8079887 -115996285 + B2_Mm2 SINE B2 56 186 -9 2 646 370 127 14 14 chr9 8079911 8079983 -115996189 + CT-rich Low_complexity Low_complexity 1 72 0 2 646 542 188 134 17 chr9 8079992 8080111 -115996061 - B1_Mus2 SINE Alu -12 135 3 2 646 25982 147 32 141 chr9 8080197 8081279 -115994893 + L1_Mus2 LINE L1 409 1364 -4519 2 646 4430 53 4 0 chr9 8081279 8081827 -115994345 - L1Md_F2 LINE L1 0 6582 6033 2 646 25982 106 58 22 chr9 8081827 8083094 -115993078 + L1_Mus2 LINE L1 1365 2818 -3065 2 646 973 61 114 0 chr9 8083094 8083226 -115992946 + B1_Mm SINE Alu 1 147 0 2 646 25982 93 44 24 chr9 8083226 8087012 -115989160 + L1_Mus2 LINE L1 2819 6566 0 2 646 26 30 0 0 chr9 8087137 8087170 -115989002 + AT_rich Low_complexity Low_complexity 1 33 0 2 646 1329 75 37 11 chr9 8087624 8087812 -115988360 - B2_Mm2 SINE B2 -1 194 2 2 646 250 143 25 49 chr9 8087815 8087896 -115988276 - Lx9 LINE L1 -1 7643 7565 2 646 369 0 0 0 chr9 8087905 8087946 -115988226 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 646 270 0 0 0 chr9 8087946 8087975 -115988197 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 646 487 245 73 21 chr9 8088009 8088201 -115987971 - Lx9 LINE L1 -225 7419 7218 2 646 2402 71 64 12 chr9 8088224 8088553 -115987619 + ORR1A1 LTR MaLR 1 346 0 2 646 749 226 136 0 chr9 8088553 8088730 -115987442 - B3 SINE B2 -14 202 2 2 646 575 215 0 36 chr9 8088795 8088906 -115987266 + B1_Mur2 SINE Alu 13 119 -30 2 646 8481 161 36 53 chr9 8088909 8090421 -115985751 + L1_Mur3 LINE L1 2058 3518 -2362 2 646 1405 84 16 0 chr9 8090421 8090611 -115985561 - B2_Mm2 SINE B2 -2 193 1 2 646 8481 161 36 53 chr9 8090611 8091070 -115985102 + L1_Mur3 LINE L1 3519 3996 -1884 2 646 523 158 20 0 chr9 8091073 8091174 -115984998 + L1_Mur3 LINE L1 4371 4473 -1407 2 646 495 0 0 0 chr9 8091198 8091253 -115984919 + (TATG)n Simple_repeat Simple_repeat 4 58 0 2 646 3279 40 8 5 chr9 8091253 8091651 -115984521 - MTB LTR MaLR -1 399 1 2 646 396 0 0 0 chr9 8091651 8091695 -115984477 + (TATG)n Simple_repeat Simple_repeat 2 45 0 2 646 243 0 0 0 chr9 8091695 8091722 -115984450 + (CCCA)n Simple_repeat Simple_repeat 2 28 0 2 646 449 162 88 0 chr9 8091724 8091804 -115984368 - B1_Mus1 SINE Alu -60 88 2 2 646 315 141 106 82 chr9 8091728 8091813 -115984359 - MT2B LTR ERVL -361 240 154 2 646 1233 172 74 57 chr9 8091854 8092205 -115983967 + Lx7 LINE L1 7340 7696 0 2 646 23 33 0 0 chr9 8092317 8092347 -115983825 + AT_rich Low_complexity Low_complexity 1 30 0 2 646 604 190 26 0 chr9 8093425 8093541 -115982631 - PB1D9 SINE Alu 0 120 2 2 646 229 286 143 0 chr9 8093828 8093898 -115982274 + ID4 SINE ID 3 82 -1 2 646 699 180 49 21 chr9 8094002 8094144 -115982028 + B1_Mus1 SINE Alu 1 146 -2 2 646 21 0 0 0 chr9 8094453 8094474 -115981698 + AT_rich Low_complexity Low_complexity 1 21 0 2 646 1103 190 15 0 chr9 8094624 8094819 -115981353 - B3 SINE B2 -15 201 4 2 646 962 91 144 12 chr9 8094981 8095148 -115981024 - B2_Mm1a SINE B2 -3 190 2 2 646 23 54 0 0 chr9 8096276 8096313 -115979859 + AT_rich Low_complexity Low_complexity 1 37 0 2 646 236 229 0 0 chr9 8096353 8096401 -115979771 - L1M5 LINE L1 -539 5634 5587 2 646 890 219 63 48 chr9 8096671 8096835 -115979337 - B3 SINE B2 -5 211 44 2 646 1382 50 50 0 chr9 8096835 8097015 -115979157 - B2_Mm2 SINE B2 -5 190 2 2 646 890 219 63 48 chr9 8097015 8097056 -115979116 - B3 SINE B2 -173 43 3 2 646 355 259 0 45 chr9 8097060 8097149 -115979023 - B4 SINE B4 -206 86 2 2 646 228 314 0 0 chr9 8097174 8097244 -115978928 + MLT2C1 LTR ERVL 36 105 -292 2 646 245 313 32 65 chr9 8097340 8097463 -115978709 + MLT2C1 LTR ERVL 443 561 -2 2 646 351 294 77 13 chr9 8097475 8097630 -115978542 - L1M5 LINE L1 -872 5274 5110 2 646 1253 27 0 0 chr9 8097676 8097823 -115978349 + B1_Mus2 SINE Alu 1 147 0 2 646 348 265 209 19 chr9 8097863 8098232 -115977940 - L1M5 LINE L1 -1104 5042 4604 2 646 472 321 45 6 chr9 8099486 8099643 -115976529 + B3A SINE B2 1 163 -35 2 646 318 91 0 0 chr9 8099619 8099663 -115976509 + B1_Mur4 SINE Alu 99 142 -8 2 646 243 0 0 0 chr9 8099677 8099704 -115976468 + (A)n Simple_repeat Simple_repeat 1 27 0 2 646 298 304 13 0 chr9 8102208 8102287 -115973885 - Lx8 LINE L1 -259 7214 7135 2 646 717 56 0 27 chr9 8102480 8102590 -115973582 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 2 646 416 241 0 0 chr9 8102721 8102808 -115973364 + ID_B1 SINE B4 135 221 -3 2 646 337 67 0 0 chr9 8102936 8102981 -115973191 + B3A SINE B2 1 45 -153 2 646 21 0 0 0 chr9 8104037 8104058 -115972114 + AT_rich Low_complexity Low_complexity 1 21 0 2 646 191 176 0 38 chr9 8104676 8104729 -115971443 + CT-rich Low_complexity Low_complexity 5 55 0 2 646 229 399 0 17 chr9 8104777 8104958 -115971214 + GA-rich Low_complexity Low_complexity 2 179 0 2 646 186 103 0 0 chr9 8104966 8104995 -115971177 + (GGAGAA)n Simple_repeat Simple_repeat 4 32 0 2 646 21 57 0 0 chr9 8106675 8106710 -115969462 + AT_rich Low_complexity Low_complexity 1 35 0 2 646 710 86 54 8 chr9 8107520 8107649 -115968523 - L1_Mus3 LINE L1 -1 6637 6503 2 646 1029 117 419 13 chr9 8108139 8108373 -115967799 + ORR1A4 LTR MaLR 1 329 0 2 646 21 0 0 0 chr9 8109157 8109178 -115966994 + AT_rich Low_complexity Low_complexity 1 21 0 2 646 1530 101 83 8 chr9 8109592 8109832 -115966340 - L1Md_F2 LINE L1 0 6582 6325 2 646 440 262 132 28 chr9 8109840 8109935 -115966237 - L1_Rod LINE L1 -15 5832 5729 2 646 210 71 0 0 chr9 8109935 8109963 -115966209 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 646 440 262 132 28 chr9 8109963 8110154 -115966018 - L1_Rod LINE L1 -119 5728 5518 2 646 281 256 51 0 chr9 8110816 8110894 -115965278 - ID4 SINE ID -1 82 1 2 646 818 189 225 0 chr9 8110986 8111155 -115965017 - B3 SINE B2 -9 207 1 2 646 300 203 41 28 chr9 8111719 8111846 -115964326 - Lx6 LINE L1 0 7460 7365 2 646 250 293 48 12 chr9 8113005 8113088 -115963084 + LTR82A LTR ERVL 9 94 -778 2 646 240 359 58 64 chr9 8113622 8113917 -115962255 + MLT1J LTR MaLR 220 512 0 2 646 30 0 0 0 chr9 8114500 8114530 -115961642 + AT_rich Low_complexity Low_complexity 1 30 0 2 646 1516 213 76 39 chr9 8114559 8115076 -115961096 + RLTR1 LTR ERV1 1 624 0 2 646 19497 239 20 14 chr9 8115076 8119817 -115956355 + MMERGLN-int LTR ERV1 1 4771 -2785 2 646 240 169 0 33 chr9 8119817 8119878 -115956294 + RLTR1 LTR ERV1 566 624 0 2 646 285 273 150 76 chr9 8119940 8120162 -115956010 - B4A SINE B4 0 292 75 2 646 368 266 90 41 chr9 8121341 8121486 -115954686 - RSINE1 SINE B4 -12 153 2 2 646 316 274 18 45 chr9 8121846 8121923 -115954249 + B2_Mm2 SINE B2 81 155 -40 2 646 369 0 0 0 chr9 8121923 8121964 -115954208 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 646 316 274 18 45 chr9 8121964 8121997 -115954175 + B2_Mm2 SINE B2 156 188 -7 2 646 486 0 0 0 chr9 8122045 8122099 -115954073 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 646 349 255 152 13 chr9 8122103 8122254 -115953918 + L1M3 LINE L1 4408 4579 -1561 2 646 338 381 46 35 chr9 8122257 8122431 -115953741 + MLT1G LTR MaLR 109 284 -307 2 646 415 185 76 0 chr9 8122807 8122899 -115953273 - B1_Mur1 SINE Alu 0 149 51 2 646 238 206 62 88 chr9 8122830 8122910 -115953262 - MT2B LTR ERVL -323 278 201 2 646 181 263 186 21 chr9 8123015 8123112 -115953060 - L2a LINE L2 -277 3149 3037 2 646 798 89 0 0 chr9 8124751 8124863 -115951309 + (TCCA)n Simple_repeat Simple_repeat 4 115 0 2 646 269 300 12 0 chr9 8124876 8124956 -115951216 + L1MDa LINE L1 115 195 -6438 2 646 522 253 46 17 chr9 8124954 8125181 -115950991 + L1M3 LINE L1 5260 5491 -2294 2 646 320 303 62 0 chr9 8125598 8125743 -115950429 + L1MD LINE L1 5615 5768 -474 2 646 358 260 0 40 chr9 8126129 8126229 -115949943 + L1MD2 LINE L1 6190 6285 -74 3 647 7212 65 10 3 chr9 8127203 8128115 -115948057 + L1_Mus1 LINE L1 5424 6340 -227 3 647 198 0 0 0 chr9 8128115 8128137 -115948035 + (C)n Simple_repeat Simple_repeat 1 22 0 3 647 7212 60 11 4 chr9 8128137 8128361 -115947811 + L1_Mus1 LINE L1 6341 6565 -2 3 647 21 0 0 0 chr9 8128502 8128523 -115947649 + AT_rich Low_complexity Low_complexity 1 21 0 3 647 186 43 0 0 chr9 8128547 8128570 -115947602 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 647 931 103 0 7 chr9 8128588 8128735 -115947437 - Lx2B LINE L1 -17 6983 6838 3 647 750 80 182 0 chr9 8128824 8128961 -115947211 + L1_Mus4 LINE L1 6474 6635 -1 3 647 23 33 0 0 chr9 8129014 8129044 -115947128 + AT_rich Low_complexity Low_complexity 1 30 0 3 647 22 0 0 0 chr9 8129450 8129472 -115946700 + AT_rich Low_complexity Low_complexity 1 22 0 3 647 481 275 73 9 chr9 8129523 8129705 -115946467 + B3 SINE B2 9 212 -4 3 647 1304 163 18 0 chr9 8131035 8131256 -115944916 - URR1A DNA MER1_type -1 225 1 3 647 258 196 165 64 chr9 8132662 8132682 -115943490 + MT2B LTR ERVL 145 175 -426 3 647 457 142 178 35 chr9 8132682 8132809 -115943363 + B1_Mur3 SINE Alu 2 149 0 3 647 1735 16 0 0 chr9 8132884 8133077 -115943095 + B2_Mm1a SINE B2 1 193 0 3 647 234 0 0 0 chr9 8133978 8134004 -115942168 + (GGGTG)n Simple_repeat Simple_repeat 1 26 0 3 647 317 250 0 12 chr9 8134337 8134418 -115941754 + (CGG)n Simple_repeat Simple_repeat 3 82 0 3 647 309 345 0 28 chr9 8134654 8134836 -115941336 + (AGCTG)n Simple_repeat Simple_repeat 4 180 0 3 647 257 346 9 9 chr9 8134913 8135086 -115941086 + (AGCTG)n Simple_repeat Simple_repeat 1 173 0 3 647 243 146 0 0 chr9 8135352 8135393 -115940779 + (GGA)n Simple_repeat Simple_repeat 3 43 0 3 647 226 314 76 76 chr9 8136304 8136449 -115939723 + MT2B2 LTR ERVL 94 238 -346 3 647 578 237 17 17 chr9 8136388 8136504 -115939668 + ID_B1 SINE B4 103 218 -6 3 647 22 56 0 0 chr9 8136781 8136817 -115939355 + AT_rich Low_complexity Low_complexity 1 36 0 3 647 903 273 55 70 chr9 8136886 8137158 -115939014 + B4A SINE B4 11 278 -14 3 647 221 291 18 0 chr9 8137356 8137411 -115938761 - L2a LINE L2 -29 3397 3342 3 647 549 263 27 12 chr9 8137421 8137605 -115938567 + B3A SINE B2 2 195 0 3 647 495 33 0 0 chr9 8137691 8137752 -115938420 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 3 647 218 324 130 103 chr9 8137905 8138116 -115938056 - L2a LINE L2 -558 2861 2642 3 647 3424 53 0 18 chr9 8138116 8138561 -115937611 + L1Md_F2 LINE L1 6146 6582 0 3 647 218 324 130 103 chr9 8138561 8138641 -115937531 - L2a LINE L2 -778 2641 2562 3 647 338 322 93 0 chr9 8138644 8138762 -115937410 + RSINE1 SINE B4 1 129 -36 3 647 273 118 0 0 chr9 8138800 8138851 -115937321 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 647 870 220 32 0 chr9 8139125 8139311 -115936861 - MER57D LTR ERV1 -2 409 218 3 647 763 234 81 12 chr9 8139340 8139513 -115936659 - B3 SINE B2 -27 189 5 3 647 298 251 14 6 chr9 8139517 8139613 -115936559 - MER57D LTR ERV1 -182 229 126 3 647 29 0 0 0 chr9 8140580 8140609 -115935563 + AT_rich Low_complexity Low_complexity 1 29 0 3 647 410 238 305 0 chr9 8140627 8140784 -115935388 - B3A SINE B2 -6 210 6 3 647 3733 243 121 14 chr9 8140896 8141969 -115934203 - Lx8 LINE L1 -144 7329 6142 3 647 601 204 0 0 chr9 8142077 8142190 -115933982 + Lx5 LINE L1 6614 6726 -324 3 647 462 261 0 0 chr9 8142200 8142319 -115933853 + Lx5 LINE L1 6911 7029 -21 3 647 182 37 37 0 chr9 8142319 8142346 -115933826 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 647 31378 84 25 10 chr9 8143197 8149197 -115926975 + Lx3_Mus LINE L1 208 6537 -472 3 647 1540 53 0 41 chr9 8149198 8149346 -115926826 + ORR1A1 LTR MaLR 138 278 -68 3 647 198 0 0 0 chr9 8149346 8149368 -115926804 + (TTG)n Simple_repeat Simple_repeat 2 23 0 3 647 1540 53 0 41 chr9 8149368 8149437 -115926735 + ORR1A1 LTR MaLR 279 345 -1 3 647 11024 91 9 2 chr9 8149437 8151022 -115925150 + ORR1A1-int LTR MaLR 1 1596 -196 3 647 712 44 0 0 chr9 8151001 8151092 -115925080 + ORR1A1 LTR MaLR 202 292 -54 3 647 3471 96 4 10 chr9 8151114 8151599 -115924573 + Lx3_Mus LINE L1 6528 7009 0 3 647 189 94 0 0 chr9 8151977 8152009 -115924163 + (T)n Simple_repeat Simple_repeat 1 32 0 3 647 4209 67 0 48 chr9 8152888 8153468 -115922704 + L1_Mus2 LINE L1 6015 6566 0 3 647 720 230 169 22 chr9 8155195 8155373 -115920799 - B3 SINE B2 -5 211 8 3 647 1542 32 0 0 chr9 8155404 8155594 -115920578 - L1Md_F2 LINE L1 -260 6322 6133 3 647 1024 88 0 40 chr9 8155594 8155771 -115920401 + L1Md_F2 LINE L1 6413 6582 0 3 647 631 296 13 0 chr9 8155981 8156140 -115920032 - RSINE1 SINE B4 -3 162 2 3 647 6462 89 4 5 chr9 8157670 8158740 -115917432 + L1VL1 LINE L1 187 1255 -2443 3 647 1486 106 8 0 chr9 8158719 8158981 -115917191 + L1VL1 LINE L1 670 912 -5529 3 647 16819 111 1 8 chr9 8158968 8161683 -115914489 + L1_Mm LINE L1 2179 4876 -1007 3 647 3719 76 6 12 chr9 8161683 8162190 -115913982 + L1_Mus2 LINE L1 6063 6566 0 3 647 1233 274 40 14 chr9 8162546 8162894 -115913278 - MTEa LTR MaLR -8 371 15 3 647 192 339 130 8 chr9 8163288 8163419 -115912753 - MIR SINE MIR -74 188 42 3 647 289 325 11 67 chr9 8163445 8163534 -115912638 - ID SINE ID -139 85 2 3 647 385 267 39 19 chr9 8163546 8163649 -115912523 - PB1 SINE Alu -4 123 19 3 647 5417 71 4 32 chr9 8163785 8164532 -115911640 - L1_Mus2 LINE L1 0 6566 5841 3 647 4677 106 34 26 chr9 8164554 8165466 -115910706 - L1VL4 LINE L1 -1880 1937 1027 3 647 3036 67 10 10 chr9 8165466 8165873 -115910299 - L1_Mus1 LINE L1 0 6567 6161 3 647 2279 158 33 105 chr9 8165873 8166358 -115909814 - L1VL4 LINE L1 -5493 1026 573 3 647 610 265 102 5 chr9 8166724 8166921 -115909251 - B3 SINE B2 0 216 1 3 647 2139 166 85 15 chr9 8167080 8167526 -115908646 - RLTR1 LTR ERV1 0 624 126 3 647 27 0 0 0 chr9 8167683 8167710 -115908462 + AT_rich Low_complexity Low_complexity 1 27 0 3 647 9608 65 16 4 chr9 8167726 8169736 -115906436 - L1Md_F2 LINE L1 0 6582 4547 3 647 3474 45 28 9 chr9 8169736 8170164 -115906008 + RLTR10C LTR ERVK 1 436 0 3 647 1403 56 0 0 chr9 8170164 8170344 -115905828 + MMERVK10C-int LTR ERVK 1 180 -7401 3 647 237 214 0 0 chr9 8170344 8170386 -115905786 + RLTR27 LTR ERVK 231 272 -37 3 647 389 22 0 0 chr9 8170386 8170432 -115905740 + MMERVK10C-int LTR ERVK 222 267 -7314 3 647 259 191 0 29 chr9 8170531 8170601 -115905571 + GA-rich Low_complexity Low_complexity 1 68 0 3 647 324 89 0 0 chr9 8170601 8170646 -115905526 + MMERVK10C-int LTR ERVK 93 137 -6405 3 647 18229 45 1 1 chr9 8170649 8173150 -115903022 + MMERVK10C-int LTR ERVK 3512 5810 -1771 3 647 1953 75 8 0 chr9 8173136 8173403 -115902769 + MMERVK10C-int LTR ERVK 6646 6914 -667 3 647 194 275 116 27 chr9 8173403 8173515 -115902657 - L2 LINE L2 -3050 369 248 3 647 4163 33 0 83 chr9 8173515 8174118 -115902054 + MMERVK10C-int LTR ERVK 7027 7579 -2 3 647 3580 35 28 0 chr9 8174120 8174544 -115901628 + RLTR10C LTR ERVK 1 436 0 3 647 6329 60 0 0 chr9 8174544 8175405 -115900767 - L1Md_A LINE L1 -1313 4570 3710 3 647 3660 132 4 42 chr9 8175392 8176335 -115899837 - L1Md_A LINE L1 -4363 1520 622 3 647 39 22 0 0 chr9 8176496 8176542 -115899630 + AT_rich Low_complexity Low_complexity 1 46 0 3 647 5974 47 41 1 chr9 8177728 8178479 -115897693 - L1Md_F2 LINE L1 -3 6579 5799 3 647 457 230 239 49 chr9 8178970 8179091 -115897081 + B3 SINE B2 2 149 -67 3 647 387 143 0 0 chr9 8179091 8179147 -115897025 + B1_Mus2 SINE Alu 1 56 -91 3 647 436 314 94 70 chr9 8182490 8182661 -115893511 + B4A SINE B4 2 176 -116 3 647 207 186 0 0 chr9 8182719 8182762 -115893410 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 647 433 359 89 12 chr9 8182808 8183067 -115893105 - ORR1E LTR MaLR -2 357 79 3 647 261 0 0 0 chr9 8183297 8183326 -115892846 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 647 551 306 6 36 chr9 8183486 8183652 -115892520 - RSINE1 SINE B4 0 165 5 3 647 624 298 38 9 chr9 8184306 8184516 -115891656 + B3 SINE B2 1 216 0 3 647 27 0 0 0 chr9 8185154 8185181 -115890991 + AT_rich Low_complexity Low_complexity 1 27 0 3 647 26 0 0 0 chr9 8186176 8186202 -115889970 + AT_rich Low_complexity Low_complexity 1 26 0 3 647 26 0 0 0 chr9 8186216 8186242 -115889930 + AT_rich Low_complexity Low_complexity 1 26 0 3 647 553 261 24 40 chr9 8186269 8186393 -115889779 - B1F SINE Alu -25 124 3 3 647 849 126 20 7 chr9 8187247 8187399 -115888773 - L1_Mus3 LINE L1 -5 6633 6480 3 647 6684 105 46 11 chr9 8187445 8188443 -115887729 - RLTR13D4 LTR ERVK 0 1033 1 3 647 4923 166 6 11 chr9 8188452 8189385 -115886787 - ETnERV3-int LTR ERVK -28 5780 4852 3 647 1031 60 0 0 chr9 8189400 8189533 -115886639 + B1_Mus1 SINE Alu 15 147 -1 3 647 309 171 0 47 chr9 8189538 8189667 -115886505 + A-rich Low_complexity Low_complexity 1 123 0 3 647 1724 201 17 45 chr9 8189755 8190177 -115885995 - ETnERV3-int LTR ERVK -1003 4805 4396 3 647 3625 126 14 12 chr9 8190183 8190833 -115885339 - ETnERV3-int LTR ERVK -3932 3474 2824 3 647 2891 142 2 17 chr9 8190833 8191372 -115884800 - L1_Mur2 LINE L1 -1955 3922 3392 3 647 256 35 86 0 chr9 8191372 8191430 -115884742 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 647 5595 67 3 0 chr9 8191430 8192137 -115884035 - L1_Mus1 LINE L1 -15 6552 5844 3 647 2590 49 65 0 chr9 8192137 8192462 -115883710 + ORR1A1 LTR MaLR 1 346 0 3 647 5790 82 25 1 chr9 8192462 8193316 -115882856 + ORR1A1-int LTR MaLR 1 874 -918 3 647 4015 53 26 0 chr9 8193316 8193897 -115882275 - L1Md_F2 LINE L1 -661 5921 5330 3 647 4413 96 0 13 chr9 8193897 8194528 -115881644 + L1Md_F2 LINE L1 5960 6582 0 3 647 6822 74 4 3 chr9 8194528 8195459 -115880713 + ORR1A1-int LTR MaLR 861 1792 0 3 647 2580 46 68 0 chr9 8195459 8195783 -115880389 + ORR1A1 LTR MaLR 1 346 0 3 647 22171 118 9 169 chr9 8195783 8197770 -115878402 - L1VL1 LINE L1 -35 5848 3895 3 647 3827 169 119 11 chr9 8197770 8198584 -115877588 + RLTR13D6 LTR ERVK 1 902 0 3 647 22171 118 9 169 chr9 8198584 8200673 -115875499 - L1VL1 LINE L1 -35 3894 1839 3 647 618 51 0 0 chr9 8200673 8200751 -115875421 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 3 647 1144 82 0 0 chr9 8200754 8200900 -115875272 - B1_Mus1 SINE Alu -1 147 2 3 647 22171 113 10 72 chr9 8200900 8202347 -115873825 - L1VL1 LINE L1 -4045 1838 403 3 647 3765 195 74 14 chr9 8202343 8203472 -115872700 - Lx7 LINE L1 -1537 6159 4982 3 647 3619 174 72 4 chr9 8203476 8204182 -115871990 - RMER1A Other Other -2 1028 275 3 647 668 258 109 0 chr9 8204156 8204379 -115871793 - RMER1A Other Other -573 493 188 3 647 2261 176 100 42 chr9 8204379 8204967 -115871205 - Lx7 LINE L1 -912 4968 4347 3 647 3069 212 88 126 chr9 8205118 8206498 -115869674 + RMER1A Other Other 2 1026 -4 3 647 936 141 43 48 chr9 8206498 8206707 -115869465 - L1_Mur3 LINE L1 -2184 3696 3489 3 647 7227 146 64 40 chr9 8206707 8208206 -115867966 - L1_Mur3 LINE L1 -2765 3115 1617 3 647 465 115 310 26 chr9 8208206 8208322 -115867850 - B2_Mm2 SINE B2 0 195 47 3 647 7227 146 64 40 chr9 8208322 8208372 -115867800 - L1_Mur3 LINE L1 -2765 1616 1565 3 647 1296 70 41 0 chr9 8208372 8208544 -115867628 - B2_Mm1t SINE B2 -14 179 1 3 647 4883 214 63 29 chr9 8208544 8209761 -115866411 - L1_Mur3 LINE L1 -4313 1564 298 3 647 6227 184 8 2 chr9 8209991 8211491 -115864681 - Lx4B LINE L1 -19 6981 5443 3 647 288 70 0 0 chr9 8211498 8211541 -115864631 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 647 24006 73 101 42 chr9 8211541 8214837 -115861335 - L1Md_F2 LINE L1 -18 6567 2896 4 647 1126 88 0 7 chr9 8214837 8214985 -115861187 - B1_Mus2 SINE Alu 0 147 1 4 647 24006 79 123 47 chr9 8214985 8216956 -115859216 - L1Md_F2 LINE L1 -2991 2895 832 4 647 841 185 80 98 chr9 8216984 8217182 -115858990 + RLTRETN_Mm LTR ERVK 41 221 -101 4 647 306 0 0 0 chr9 8217182 8217216 -115858956 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 647 841 185 80 98 chr9 8217216 8217304 -115858868 + RLTRETN_Mm LTR ERVK 222 322 0 4 647 3066 98 9 0 chr9 8217304 8217763 -115858409 - L1Md_F2 LINE L1 -5674 945 483 4 647 1668 135 0 4 chr9 8217763 8218030 -115858142 - L1VL1 LINE L1 -6156 266 1 4 647 10428 142 31 22 chr9 8218031 8220067 -115856105 - Lx4B LINE L1 -422 5455 3402 3 647 7118 103 19 6 chr9 8220094 8221185 -115854987 - Lx LINE L1 -1 6653 5578 4 647 2368 145 45 7 chr9 8221180 8221625 -115854547 + L1_Mur2 LINE L1 4278 4739 -1138 4 647 235 290 30 61 chr9 8222698 8222729 -115853443 - ID_B1 SINE B4 -118 106 11 4 647 280 224 44 15 chr9 8222729 8222797 -115853375 - ID4 SINE ID -3 80 11 4 647 261 210 16 31 chr9 8222859 8222923 -115853249 + ID_B1 SINE B4 97 159 -65 4 647 243 194 27 107 chr9 8222923 8222934 -115853238 + B1F2 SINE Alu 16 84 -65 4 647 1033 340 46 53 chr9 8223017 8223694 -115852478 + RodERV21-int LTR ERV1 3164 3835 -1156 4 647 1081 258 46 23 chr9 8223785 8224130 -115852042 + RodERV21-int LTR ERV1 4441 4793 -198 4 647 286 307 83 38 chr9 8224186 8224318 -115851854 + RMER4B LTR ERVK 347 484 -101 4 647 261 254 0 29 chr9 8224485 8224554 -115851618 + CT-rich Low_complexity Low_complexity 2 68 0 4 647 1857 107 8 0 chr9 8224680 8224942 -115851230 + L1_Mm LINE L1 5272 5535 -348 4 647 1296 55 0 0 chr9 8224971 8225117 -115851055 - B1_Mm SINE Alu 0 147 2 4 647 21 36 0 0 chr9 8225197 8225225 -115850947 + AT_rich Low_complexity Low_complexity 1 28 0 4 647 572 0 0 14 chr9 8225429 8225498 -115850674 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 647 467 284 63 159 chr9 8226261 8226500 -115849672 + ID_B1 SINE B4 5 220 -4 4 647 796 292 197 20 chr9 8226971 8227466 -115848706 - RMER1A Other Other -564 466 13 4 647 2957 93 31 10 chr9 8227466 8227858 -115848314 + MTB LTR MaLR 1 400 0 4 647 790 231 313 19 chr9 8227858 8228114 -115848058 - RMER1B Other Other -678 388 45 4 647 234 209 0 0 chr9 8228497 8228540 -115847632 - L1_Mur3 LINE L1 -2062 3818 3776 4 647 3954 191 53 24 chr9 8228526 8229305 -115846867 + Lx7 LINE L1 6459 7259 -437 4 647 626 188 0 0 chr9 8229315 8229427 -115846745 - PB1D9 SINE Alu 0 120 9 4 647 1796 107 4 11 chr9 8229460 8229734 -115846438 - L1_Mm LINE L1 -444 5439 5168 4 647 7423 100 14 12 chr9 8229748 8231326 -115844846 - L1_Mus2 LINE L1 -3 6563 4987 4 647 41477 12 1 6 chr9 8231335 8237517 -115838655 - L1Md_A LINE L1 0 6582 434 4 647 18577 175 58 3 chr9 8237515 8241116 -115835056 - L1_Mur1 LINE L1 -885 5001 1203 4 647 4249 167 72 5 chr9 8241082 8241876 -115834296 - L1_Mus2 LINE L1 -5380 1236 390 4 647 18284 87 21 10 chr9 8242726 8245903 -115830269 - L1VL4 LINE L1 -146 3413 207 4 647 1019 87 0 0 chr9 8245915 8246053 -115830119 - B1_Mm SINE Alu 0 147 10 4 647 1231 278 42 18 chr9 8246084 8246414 -115829758 - ORR1D2 LTR MaLR -30 340 3 4 647 488 254 0 54 chr9 8248207 8248336 -115827836 + RMER1C Other Other 4 125 -1217 4 647 210 143 0 0 chr9 8248405 8248440 -115827732 + (TTG)n Simple_repeat Simple_repeat 1 35 0 4 647 558 314 0 0 chr9 8248440 8248580 -115827592 - B1_Mur1 SINE Alu -7 142 3 4 647 21 0 0 0 chr9 8248739 8248760 -115827412 + AT_rich Low_complexity Low_complexity 1 21 0 4 647 307 297 108 54 chr9 8248763 8248948 -115827224 - MIRb SINE MIR -11 257 63 4 647 1698 203 79 8 chr9 8250338 8250716 -115825456 + MTD LTR MaLR 10 414 -5 4 647 226 231 179 0 chr9 8251362 8251440 -115824732 + MLT2B4 LTR ERVL 414 505 -51 4 647 13422 3 1 0 chr9 8251788 8253954 -115822218 - L1Md_A LINE L1 0 6582 4414 4 647 446 33 17 0 chr9 8254060 8254120 -115822052 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 4 647 288 284 136 0 chr9 8254348 8254429 -115821743 - B1F1 SINE Alu -57 92 1 4 647 977 263 99 0 chr9 8255529 8255791 -115820381 + B4 SINE B4 2 289 -3 4 647 343 256 41 55 chr9 8255998 8256143 -115820029 + L1M5 LINE L1 5526 5668 -456 4 80 8338 79 11 15 chr9 8256365 8258173 -115817999 + L1VL4 LINE L1 190 1984 -1575 4 648 1794 253 71 60 chr9 8258995 8259814 -115816358 - L1_Rod LINE L1 -1222 4625 3798 4 648 216 0 0 0 chr9 8259852 8259876 -115816296 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 648 269 329 0 0 chr9 8260363 8260448 -115815724 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 4 648 801 236 209 34 chr9 8261358 8261679 -115814493 - MTEb LTR MaLR -2 377 1 4 648 294 384 32 0 chr9 8261830 8261955 -115814217 + LTR16A1 LTR ERVL 222 350 -106 4 648 766 259 64 79 chr9 8261993 8262390 -115813782 - RLTR33 LTR ERVK -25 653 175 4 648 1475 230 103 15 chr9 8262506 8262846 -115813326 + ORR1D2 LTR MaLR 1 370 0 4 648 198 0 0 0 chr9 8264676 8264698 -115811474 + (T)n Simple_repeat Simple_repeat 1 22 0 4 648 250 80 20 20 chr9 8265487 8265538 -115810634 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 4 648 1105 110 7 14 chr9 8265538 8265686 -115810486 - B1_Mus1 SINE Alu 0 148 2 4 648 642 311 33 5 chr9 8266094 8266278 -115809894 - B3A SINE B2 -6 192 4 4 648 3096 54 49 0 chr9 8266431 8266801 -115809371 - RLTR10 LTR ERVK -2 388 1 4 648 23 33 0 0 chr9 8266810 8266840 -115809332 + AT_rich Low_complexity Low_complexity 1 30 0 4 648 574 13 13 13 chr9 8267235 8267311 -115808861 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 4 648 261 0 0 0 chr9 8267532 8267561 -115808611 + (CTG)n Simple_repeat Simple_repeat 1 29 0 4 648 27 100 0 0 chr9 8267873 8267963 -115808209 + AT_rich Low_complexity Low_complexity 1 90 0 4 648 22292 101 88 2 chr9 8267967 8269866 -115806306 - L1_Mus3 LINE L1 0 6638 4039 4 648 1802 65 0 25 chr9 8269866 8270102 -115806070 - L1Md_F2 LINE L1 0 6582 6353 4 648 22292 109 190 5 chr9 8270102 8272762 -115803410 - L1_Mus3 LINE L1 -1845 4038 1368 4 648 266 295 0 0 chr9 8272764 8272842 -115803330 - L1VL1 LINE L1 -6339 83 6 4 648 6102 112 38 0 chr9 8273009 8273859 -115802313 + Lx2A1 LINE L1 6125 7006 -2 4 648 198 271 0 0 chr9 8274249 8274356 -115801816 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 648 300 276 99 30 chr9 8274406 8274507 -115801665 - RSINE1 SINE B4 -2 163 56 4 648 3871 78 8 4 chr9 8275578 8276068 -115800104 - L1_Mus3 LINE L1 0 6638 6147 4 648 3132 28 42 3 chr9 8276091 8276444 -115799728 + IAPLTR1_Mm LTR ERVK 1 367 0 4 648 51237 23 13 6 chr9 8276444 8282857 -115793315 + IAPEz-int LTR ERVK 8 6481 0 4 648 2947 28 42 3 chr9 8282857 8283210 -115792962 + IAPLTR1_Mm LTR ERVK 1 367 0 4 648 1274 246 74 23 chr9 8283251 8283601 -115792571 + MTE2b LTR MaLR 5 372 -7 4 648 409 134 108 51 chr9 8283988 8284145 -115792027 - Lx9 LINE L1 0 7644 7479 4 648 289 178 53 40 chr9 8284147 8284365 -115791807 + (TATAA)n Simple_repeat Simple_repeat 1 220 0 4 648 2303 204 27 2 chr9 8284365 8284881 -115791291 - Lx9 LINE L1 -128 7516 6988 4 648 24 32 0 0 chr9 8285090 8285121 -115791051 + AT_rich Low_complexity Low_complexity 1 31 0 4 648 575 293 46 0 chr9 8285134 8285308 -115790864 - B3A SINE B2 -16 182 1 4 648 234 323 97 46 chr9 8285316 8285380 -115790792 - B3A SINE B2 -4 194 11 4 648 329 250 270 27 chr9 8285380 8285491 -115790681 - RSINE1 SINE B4 -16 149 12 4 648 64 43 0 0 chr9 8285956 8286048 -115790124 + AT_rich Low_complexity Low_complexity 1 92 0 4 648 27922 83 36 0 chr9 8286167 8291321 -115784851 + L1Md_T LINE L1 241 5586 -297 4 648 8462 33 0 0 chr9 8291321 8292317 -115783855 + L1Md_T LINE L1 5587 6582 0 4 648 7650 111 20 12 chr9 8292319 8292370 -115783802 + L1_Mus1 LINE L1 4631 4678 -1205 4 648 4550 67 5 7 chr9 8292370 8292970 -115783202 + L1Md_F2 LINE L1 5972 6570 -12 4 648 7650 103 10 6 chr9 8292970 8294846 -115781326 + L1_Mus1 LINE L1 4679 6567 0 4 648 27566 129 19 11 chr9 8294873 8300935 -115775237 + L1_Mus2 LINE L1 512 6568 -1 4 648 236 240 0 0 chr9 8301282 8301332 -115774840 - ID4 SINE ID -32 51 2 4 648 275 150 318 27 chr9 8301891 8302001 -115774171 + L1MA6 LINE L1 6096 6237 -63 4 648 1742 134 96 13 chr9 8302034 8302336 -115773836 + ORR1A2 LTR MaLR 1 327 0 4 648 243 352 11 0 chr9 8302396 8302487 -115773685 + RMER15 LTR ERVL 371 462 -113 4 648 1509 197 3 69 chr9 8302569 8302886 -115773286 + ORR1C1 LTR MaLR 1 296 -82 4 648 3726 221 128 37 chr9 8302889 8303123 -115773049 + ORR1C1-int LTR MaLR 276 514 -856 4 648 1449 166 6 99 chr9 8303123 8303478 -115772694 - RLTRETN_Mm LTR ERVK 0 322 1 4 648 3726 221 128 37 chr9 8303478 8304246 -115771926 + ORR1C1-int LTR MaLR 515 1369 -1 4 648 729 144 9 0 chr9 8304252 8304363 -115771809 + ORR1C1 LTR MaLR 1 112 -266 4 648 23 0 0 0 chr9 8304377 8304400 -115771772 + AT_rich Low_complexity Low_complexity 1 23 0 4 648 876 266 210 19 chr9 8304670 8304903 -115771269 + MTEa LTR MaLR 2 265 -114 4 648 810 180 0 41 chr9 8304903 8305048 -115771124 - B1_Mus1 SINE Alu -9 139 1 4 648 876 266 210 19 chr9 8305048 8305128 -115771044 + MTEa LTR MaLR 266 374 -5 4 648 209 30 61 0 chr9 8305900 8305933 -115770239 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 4 648 1089 110 0 0 chr9 8305933 8306079 -115770093 - B1_Mm SINE Alu -1 146 1 4 648 25 0 0 0 chr9 8306334 8306359 -115769813 + AT_rich Low_complexity Low_complexity 1 25 0 4 648 461 239 239 0 chr9 8307462 8307617 -115768555 - MTD LTR MaLR -2 417 226 4 648 207 209 0 0 chr9 8307748 8307791 -115768381 + (TATATG)n Simple_repeat Simple_repeat 1 43 0 4 648 440 252 0 70 chr9 8307794 8307909 -115768263 - B3A SINE B2 -87 111 5 4 648 248 111 0 22 chr9 8308174 8308220 -115767952 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 648 565 308 122 0 chr9 8309032 8309204 -115766968 - Lx8 LINE L1 -318 7155 6963 4 648 320 191 12 0 chr9 8309234 8309318 -115766854 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 648 1332 272 53 40 chr9 8309318 8309770 -115766402 - Lx8 LINE L1 -530 6943 6486 4 648 287 337 91 25 chr9 8310022 8310296 -115765876 - Tigger13a DNA MER2_type -219 552 261 4 648 1191 61 0 0 chr9 8310328 8310475 -115765697 - B1_Mm SINE Alu 0 147 1 5 648 371 275 215 44 chr9 8310702 8310953 -115765219 - Tigger13a DNA MER2_type -475 296 3 4 648 1266 45 11 17 chr9 8311151 8311330 -115764842 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 5 648 651 48 0 0 chr9 8311340 8311423 -115764749 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 5 648 21 57 0 0 chr9 8311448 8311483 -115764689 + AT_rich Low_complexity Low_complexity 1 35 0 5 648 7670 114 4 122 chr9 8311491 8314227 -115761945 - L1_Mus3 LINE L1 -6 6632 4272 5 648 38810 11 1 6 chr9 8314227 8320520 -115755652 - L1Md_A LINE L1 0 6582 328 5 648 10668 127 15 5 chr9 8320547 8322482 -115753690 - L1_Mus3 LINE L1 -2757 3126 1180 5 648 351 0 0 0 chr9 8322482 8322521 -115753651 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 648 2698 190 81 35 chr9 8322521 8323272 -115752900 - L1_Mus3 LINE L1 -5411 1205 437 5 648 27 0 0 0 chr9 8324741 8324768 -115751404 + AT_rich Low_complexity Low_complexity 1 27 0 5 648 312 255 30 104 chr9 8324818 8324944 -115751228 - ID4 SINE ID -22 130 9 5 648 2045 289 138 18 chr9 8325763 8326221 -115749951 - Lx8 LINE L1 -199 7274 6745 5 648 423 0 0 0 chr9 8326221 8326268 -115749904 + (TAG)n Simple_repeat Simple_repeat 3 49 0 5 648 2045 289 138 18 chr9 8326268 8326651 -115749521 - Lx8 LINE L1 -729 6744 6332 5 648 22 70 0 0 chr9 8326658 8326701 -115749471 + AT_rich Low_complexity Low_complexity 1 43 0 5 648 2717 132 13 28 chr9 8327081 8327611 -115748561 - RMER17D2 LTR ERVK 0 809 288 5 648 312 187 0 52 chr9 8327612 8327708 -115748464 + G-rich Low_complexity Low_complexity 5 95 0 5 648 715 167 0 53 chr9 8327722 8327912 -115748260 + GA-rich Low_complexity Low_complexity 1 180 0 5 648 230 157 138 16 chr9 8327923 8328046 -115748126 + GA-rich Low_complexity Low_complexity 25 162 0 5 648 2212 179 33 39 chr9 8328060 8328544 -115747628 - RMER17D2 LTR ERVK -328 481 1 5 648 21 0 0 0 chr9 8330051 8330072 -115746100 + AT_rich Low_complexity Low_complexity 1 21 0 5 648 1099 60 20 0 chr9 8330116 8330267 -115745905 - L1Md_F3 LINE L1 0 6584 6431 5 648 339 330 82 82 chr9 8331030 8331386 -115744786 + MamGypLTR2 LTR Gypsy 820 1175 -14 5 648 602 244 9 0 chr9 8331622 8331737 -115744435 + B1F SINE Alu 1 116 -33 5 648 486 236 18 0 chr9 8331762 8331927 -115744245 + (CA)n Simple_repeat Simple_repeat 1 168 0 5 648 25 0 0 0 chr9 8332077 8332102 -115744070 + AT_rich Low_complexity Low_complexity 1 25 0 5 648 250 356 129 0 chr9 8332605 8332768 -115743404 + L2 LINE L2 2620 2803 -616 5 648 8201 140 28 10 chr9 8332981 8335000 -115741172 - Lx2 LINE L1 0 6997 4945 5 648 2657 99 11 16 chr9 8335029 8335472 -115740700 + MusHAL1 LINE L1 540 980 -1732 5 648 11754 122 20 11 chr9 8335469 8338290 -115737882 - Lx2 LINE L1 -2402 3484 578 5 648 307 252 26 53 chr9 8338344 8338457 -115737715 + MER53 DNA hAT 1 110 -83 5 648 281 89 0 22 chr9 8339384 8339430 -115736742 + (CTG)n Simple_repeat Simple_repeat 1 45 0 5 648 777 281 69 8 chr9 8339913 8340175 -115735997 - B4A SINE B4 -14 278 1 5 648 1072 114 11 0 chr9 8340250 8340426 -115735746 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 648 264 59 0 0 chr9 8340426 8340460 -115735712 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 5 648 206 220 20 0 chr9 8340551 8340601 -115735571 + CT-rich Low_complexity Low_complexity 1 51 0 5 648 272 27 0 26 chr9 8341697 8341735 -115734437 + (TAA)n Simple_repeat Simple_repeat 2 38 0 5 648 25 0 0 0 chr9 8341906 8341931 -115734241 + AT_rich Low_complexity Low_complexity 1 25 0 5 648 24 85 0 0 chr9 8341994 8342053 -115734119 + AT_rich Low_complexity Low_complexity 1 59 0 5 648 1254 95 0 0 chr9 8342765 8342944 -115733228 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 5 648 872 67 0 8 chr9 8342974 8343095 -115733077 + (TTC)n Simple_repeat Simple_repeat 2 121 0 5 648 15067 99 14 1 chr9 8343382 8346444 -115729728 - L1_Mus1 LINE L1 0 6567 3467 5 648 8052 4 0 0 chr9 8346444 8347378 -115728794 - L1Md_A LINE L1 0 6582 5649 5 648 3855 106 5 0 chr9 8347377 8348008 -115728164 - MusHAL1 LINE L1 -432 2280 1647 5 648 278 256 75 40 chr9 8348038 8348132 -115728040 - PB1D10 SINE Alu -5 115 20 5 648 450 269 79 2 chr9 8349492 8349752 -115726420 + L1M4 LINE L1 4297 4574 -1572 5 648 718 280 7 58 chr9 8349763 8350040 -115726132 + Lx8 LINE L1 6282 6544 -929 5 648 1479 293 130 28 chr9 8350064 8350854 -115725318 + Lx8 LINE L1 6601 7471 -2 5 648 2035 218 5 19 chr9 8351455 8351880 -115724292 + MTC LTR MaLR 1 419 -2 5 648 295 110 27 27 chr9 8351904 8351979 -115724193 + (CATA)n Simple_repeat Simple_repeat 1 75 0 5 648 250 224 0 0 chr9 8351980 8352029 -115724143 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 648 336 324 49 86 chr9 8352068 8352335 -115723837 - Tigger13a DNA MER2_type -141 630 374 5 648 215 343 9 9 chr9 8352337 8352446 -115723726 + CT-rich Low_complexity Low_complexity 2 110 0 5 648 485 253 46 46 chr9 8352468 8352642 -115723530 - Tigger13a DNA MER2_type -419 352 179 5 648 570 307 14 0 chr9 8353649 8353789 -115722383 + RSINE1 SINE B4 2 143 -22 5 648 204 97 0 0 chr9 8353819 8353850 -115722322 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 5 648 549 0 0 0 chr9 8353956 8354017 -115722155 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 5 648 183 167 49 16 chr9 8354030 8354091 -115722081 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 5 648 232 247 24 72 chr9 8354429 8354512 -115721660 - RMER4B LTR ERVK -482 103 25 5 648 384 305 29 58 chr9 8354716 8354855 -115721317 - MLT1A0 LTR MaLR -189 176 42 5 648 37241 38 4 7 chr9 8354903 8361109 -115715063 - L1Md_T LINE L1 0 6585 443 5 648 28680 112 13 2 chr9 8361109 8367011 -115709161 - L1_Mus1 LINE L1 -10 6557 592 5 648 567 0 0 0 chr9 8367011 8367074 -115709098 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 648 1164 264 10 103 chr9 8367242 8367648 -115708524 - MTE2a LTR MaLR -9 370 3 5 648 21 71 0 0 chr9 8367837 8367879 -115708293 + AT_rich Low_complexity Low_complexity 1 42 0 5 648 21 36 0 0 chr9 8367907 8367935 -115708237 + AT_rich Low_complexity Low_complexity 1 28 0 5 648 1303 142 31 0 chr9 8367935 8368161 -115708011 - Lx2 LINE L1 0 6997 6765 5 648 21582 159 18 14 chr9 8368161 8370755 -115705417 - Lx2 LINE L1 -363 6634 4081 5 648 306 0 0 0 chr9 8370755 8370789 -115705383 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 648 21582 174 22 16 chr9 8370789 8373502 -115702670 - Lx2 LINE L1 -1803 4080 1306 5 648 4806 98 4 1 chr9 8373502 8374178 -115701994 - L1_Mus3 LINE L1 -5 6633 5956 5 648 186 43 0 0 chr9 8374178 8374201 -115701971 + (TCC)n Simple_repeat Simple_repeat 3 25 0 5 648 266 115 0 0 chr9 8374204 8374256 -115701916 - L1Md_F2 LINE L1 -4 6578 6527 5 648 5412 123 9 8 chr9 8374301 8375359 -115700813 - L1_Mus3 LINE L1 -664 5974 4920 5 648 4200 129 27 16 chr9 8375483 8376190 -115699982 - RLTR19B LTR ERVK 0 715 1 5 648 5054 175 55 34 chr9 8376196 8377279 -115698893 - RLTR19-int LTR ERVK -5 6132 5027 5 648 946 62 34 20 chr9 8377281 8377429 -115698743 - L1Md_F2 LINE L1 -1 6581 6432 5 648 36910 6 0 1 chr9 8377434 8383206 -115692966 + L1Md_A LINE L1 1 5586 -297 5 648 9029 4 0 0 chr9 8383206 8384202 -115691970 + L1Md_A LINE L1 5587 6582 0 5 648 1065 71 0 119 chr9 8384202 8384395 -115691777 - L1_Mus1 LINE L1 -132 6435 6266 5 648 4973 108 14 31 chr9 8384399 8385678 -115690494 - L1Md_F LINE L1 -4223 1660 357 5 648 8396 142 27 16 chr9 8385678 8387164 -115689008 - RLTR19-int LTR ERVK -1105 5032 3530 5 648 422 106 354 0 chr9 8387437 8387550 -115688622 - RLTR47_MM LTR ERV1 -2 530 378 5 1 4066 176 97 11 chr9 8388329 8389102 -115687070 - RMER19B LTR ERVK 0 902 67 5 649 1040 316 64 13 chr9 8389242 8389710 -115686462 + RMER5 LTR ERV1 43 534 0 5 649 1426 174 0 9 chr9 8389856 8390082 -115686090 - URR1B DNA MER1_type -1 224 1 5 649 629 131 0 48 chr9 8390635 8390723 -115685449 + B1_Mus2 SINE Alu 49 136 -11 5 649 207 0 0 0 chr9 8390723 8390746 -115685426 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 649 629 131 0 48 chr9 8390746 8390761 -115685411 + B1_Mus2 SINE Alu 137 147 0 5 649 3505 204 83 11 chr9 8390916 8391653 -115684519 - Lx5 LINE L1 -3 7047 6258 5 649 7698 156 55 6 chr9 8391653 8393061 -115683111 + L1_Mur2 LINE L1 3566 5042 -835 5 649 466 29 29 0 chr9 8393652 8393720 -115682452 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 649 195 69 0 0 chr9 8393749 8393778 -115682394 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 649 2345 193 17 21 chr9 8393779 8394250 -115681922 + RLTR20B3 LTR ERVK 109 577 0 5 649 587 303 37 42 chr9 8394573 8394814 -115681358 + RMER15 LTR ERVL 336 575 0 5 649 287 352 12 41 chr9 8395276 8395445 -115680727 + L2 LINE L2 2730 2893 -526 5 649 279 0 0 0 chr9 8396305 8396336 -115679836 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 5 649 3811 40 49 32 chr9 8396785 8397252 -115678920 - IAPLTR2_Mm LTR ERVK 0 475 1 5 649 6361 66 15 11 chr9 8397254 8398078 -115678094 - IAPEz-int LTR ERVK -2 6479 5653 5 649 2633 54 33 3 chr9 8398073 8398405 -115677767 - IAPEz-int LTR ERVK -4781 1700 1359 5 649 3512 59 22 16 chr9 8398405 8398971 -115677201 - IAPEz-int LTR ERVK -5819 662 168 5 649 242 250 0 0 chr9 8398971 8399015 -115677157 - RLTR27 LTR ERVK -34 275 232 5 649 1209 92 10 80 chr9 8399024 8399225 -115676947 - IAPEz-int LTR ERVK -6286 195 9 5 649 3836 38 49 32 chr9 8399226 8399693 -115676479 - IAPLTR2_Mm LTR ERVK 0 475 1 5 649 184 280 144 39 chr9 8399729 8399833 -115676339 - MIRc SINE MIR -25 243 129 5 649 4807 124 24 84 chr9 8400043 8400995 -115675177 - RMER17A2 LTR ERVK -11 895 1 5 649 369 235 96 68 chr9 8401156 8401302 -115674870 - MTD LTR MaLR -35 344 195 5 649 695 250 45 36 chr9 8401468 8401688 -115674484 - MTD LTR MaLR -197 222 1 5 649 717 12 0 0 chr9 8403146 8403228 -115672944 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 649 336 303 8 105 chr9 8403322 8403455 -115672717 + B4A SINE B4 39 158 -134 5 649 854 199 58 6 chr9 8403719 8403891 -115672281 - ORR1B2 LTR MaLR 0 367 187 5 649 6396 188 36 18 chr9 8403915 8403942 -115672230 - Lx4B LINE L1 0 7058 7043 5 649 258 32 0 0 chr9 8403942 8403973 -115672199 + (TATG)n Simple_repeat Simple_repeat 2 32 0 5 649 183 42 0 0 chr9 8403973 8403996 -115672176 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 5 649 6396 188 36 18 chr9 8403996 8405221 -115670951 - Lx4B LINE L1 -16 7042 5784 5 649 40061 31 0 6 chr9 8405221 8411223 -115664949 - L1Md_T LINE L1 -4 6578 620 5 649 920 177 0 19 chr9 8411224 8411385 -115664787 - Lx2B LINE L1 -1206 5794 5637 5 649 2019 309 43 33 chr9 8411395 8412185 -115663987 + ORR1D-int LTR MaLR 564 1361 -9 5 649 805 186 0 17 chr9 8412379 8412559 -115663613 + CT-rich Low_complexity Low_complexity 2 178 0 5 649 2447 218 25 20 chr9 8412579 8413185 -115662987 - Lx4B LINE L1 -2 7056 6442 5 649 588 153 134 8 chr9 8413134 8413253 -115662919 + L1_Mur3 LINE L1 4866 4999 -881 5 649 841 163 0 0 chr9 8413253 8413382 -115662790 - RLTR17 LTR ERVK -270 422 294 6 649 1210 209 10 107 chr9 8413410 8413720 -115662452 - RMER19C LTR ERVK -331 280 1 6 649 832 183 67 0 chr9 8413723 8413887 -115662285 - ORR1B2 LTR MaLR -209 175 1 5 649 311 278 78 23 chr9 8414484 8414613 -115661559 - L1M4 LINE L1 -577 5607 5472 6 649 306 250 13 13 chr9 8414790 8414867 -115661305 - MLT1A LTR MaLR -164 210 134 6 649 10427 109 6 7 chr9 8415213 8417488 -115658684 - L1_Mus2 LINE L1 -1 6565 4296 6 649 24623 87 7 2 chr9 8417481 8420825 -115655347 + L1_Mm LINE L1 2226 5586 -297 6 649 7763 76 12 5 chr9 8420825 8421812 -115654360 + L1Md_F2 LINE L1 5587 6580 -2 6 649 20195 135 13 22 chr9 8421930 8425859 -115650313 - L1_Mus2 LINE L1 -1576 4307 415 6 649 1209 274 54 15 chr9 8426243 8426576 -115649596 - MTEa LTR MaLR -2 377 32 6 649 228 376 8 16 chr9 8426583 8426710 -115649462 + L1M5 LINE L1 2610 2735 -3411 6 649 251 327 44 13 chr9 8426755 8426913 -115649259 + L1M5 LINE L1 2869 3031 -3115 6 649 442 317 7 34 chr9 8427596 8427743 -115648429 - B1F1 SINE Alu -6 143 1 6 649 326 219 15 15 chr9 8428370 8428435 -115647737 - LTR33C LTR ERVL -527 102 38 6 649 384 138 0 0 chr9 8428613 8428678 -115647494 + (TCC)n Simple_repeat Simple_repeat 3 67 0 6 649 234 0 0 0 chr9 8430092 8430118 -115646054 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 649 1272 176 44 47 chr9 8430366 8430641 -115645531 - RLTR46 LTR ERVK -5 315 42 6 649 1072 295 13 34 chr9 8431582 8431880 -115644292 + B4A SINE B4 1 292 0 6 649 1295 234 109 48 chr9 8432263 8432658 -115643514 + MTD LTR MaLR 1 419 0 6 649 3716 102 10 6 chr9 8433237 8433740 -115642432 - L1_Mus3 LINE L1 -1 6637 6133 6 649 206 224 103 0 chr9 8433765 8433823 -115642349 - L2 LINE L2 -1290 2129 2066 6 649 1712 115 23 113 chr9 8433910 8434264 -115641908 + RLTRETN_Mm LTR ERVK 1 322 0 6 649 199 350 63 24 chr9 8434509 8434635 -115641537 - L2 LINE L2 -1492 1927 1797 6 649 465 19 0 0 chr9 8434733 8434787 -115641385 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 6 649 225 319 28 0 chr9 8436352 8436424 -115639748 + GA-rich Low_complexity Low_complexity 4 77 0 6 649 838 199 227 0 chr9 8436451 8436627 -115639545 + B3 SINE B2 1 216 0 6 649 960 331 65 0 chr9 8437519 8437890 -115638282 - Lx8 LINE L1 -219 7254 6860 6 649 1142 286 97 6 chr9 8438029 8438360 -115637812 + MTD LTR MaLR 46 406 -13 6 649 3103 223 46 56 chr9 8438595 8440167 -115636005 - Lx6 LINE L1 0 7050 5540 6 649 21 0 0 0 chr9 8440466 8440487 -115635685 + AT_rich Low_complexity Low_complexity 1 21 0 6 649 4751 236 50 9 chr9 8441383 8442467 -115633705 + Lx5 LINE L1 5920 7047 -3 6 649 568 341 25 70 chr9 8442734 8442977 -115633195 - MLT1E1A LTR MaLR -98 582 351 6 649 249 326 91 132 chr9 8443332 8443650 -115632522 - MLT1J LTR MaLR -97 415 111 6 649 487 275 50 60 chr9 8444042 8444224 -115631948 - B3A SINE B2 -16 182 3 6 649 346 345 128 17 chr9 8445011 8445191 -115630981 - MER20 DNA MER1_type -19 200 1 6 649 1401 24 12 0 chr9 8445254 8445418 -115630754 - L1Md_A LINE L1 0 6582 6417 6 649 273 284 0 0 chr9 8445879 8445946 -115630226 + ID_B1 SINE B4 83 149 -75 6 649 255 277 191 0 chr9 8445880 8445974 -115630198 + PB1D7 SINE Alu 3 114 -6 6 649 8170 73 5 101 chr9 8446623 8448194 -115627978 - L1Md_F3 LINE L1 -14 6570 5392 6 649 11142 195 40 64 chr9 8448211 8450394 -115625778 - Lx6 LINE L1 -1368 6092 3848 6 649 363 44 0 0 chr9 8450394 8450439 -115625733 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 649 11142 192 35 65 chr9 8450439 8450852 -115625320 - Lx6 LINE L1 -2030 3847 3570 6 649 573 15 0 0 chr9 8450852 8450918 -115625254 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 649 11142 229 89 67 chr9 8450918 8453392 -115622780 - Lx6 LINE L1 -2310 3570 878 6 649 318 354 90 11 chr9 8453950 8454127 -115622045 + L1M5 LINE L1 5539 5729 -395 6 649 1207 226 94 123 chr9 8455217 8455310 -115620862 + MTD LTR MaLR 1 94 -325 6 649 1712 177 85 80 chr9 8455310 8455673 -115620499 + ORR1B2 LTR MaLR 1 365 -2 6 649 1207 226 94 123 chr9 8455673 8455715 -115620457 + MTD LTR MaLR 95 114 -305 6 649 1239 61 0 27 chr9 8455715 8455900 -115620272 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 649 1207 226 94 123 chr9 8455900 8456187 -115619985 + MTD LTR MaLR 115 412 -7 6 649 1763 178 139 0 chr9 8456418 8456750 -115619422 - ORR1C1 LTR MaLR 0 378 1 6 649 551 298 138 25 chr9 8456902 8457422 -115618750 + L1MEf LINE L1 1044 1634 -4490 6 649 373 295 172 0 chr9 8457557 8457679 -115618493 + MTE2b LTR MaLR 185 327 -52 6 649 684 82 8 16 chr9 8457680 8457804 -115618368 + (CA)n Simple_repeat Simple_repeat 2 124 0 6 649 245 89 22 0 chr9 8457888 8457933 -115618239 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 6 649 394 179 15 0 chr9 8458206 8458273 -115617899 - ID4_ SINE ID -13 70 3 6 649 303 121 0 0 chr9 8458295 8458353 -115617819 + (CAAAG)n Simple_repeat Simple_repeat 2 59 0 6 649 356 275 55 9 chr9 8458374 8458472 -115617700 - B1F SINE Alu -5 144 41 6 649 2617 43 0 3 chr9 8458472 8458775 -115617397 - L1Md_A LINE L1 0 6582 6281 6 649 356 273 57 24 chr9 8458775 8458800 -115617372 - B1F SINE Alu -109 40 18 6 649 253 271 82 27 chr9 8459493 8459603 -115616569 - L1M3e LINE L1 -6914 116 1 6 649 479 256 176 74 chr9 8459695 8459843 -115616329 + RSINE1 SINE B4 3 165 0 6 649 30 27 0 0 chr9 8459854 8459891 -115616281 + AT_rich Low_complexity Low_complexity 1 37 0 6 649 7073 131 29 3 chr9 8459962 8461662 -115614510 - Lx LINE L1 -7 6647 4909 6 649 609 281 28 60 chr9 8461726 8461976 -115614196 + Lx8 LINE L1 6620 6861 -612 6 649 226 211 0 0 chr9 8463642 8463680 -115612492 - B1F2 SINE Alu -111 38 1 6 649 456 231 0 0 chr9 8463697 8463827 -115612345 + (TG)n Simple_repeat Simple_repeat 1 130 0 6 649 7760 64 2 11 chr9 8464571 8465962 -115610210 - L1Md_F2 LINE L1 0 6582 5205 6 649 1928 88 44 0 chr9 8465960 8466233 -115609939 + L1Md_F2 LINE L1 4933 5217 -666 6 649 340 250 0 0 chr9 8466381 8466457 -115609715 + B3A SINE B2 2 77 -121 6 649 271 148 5 5 chr9 8466892 8466948 -115609224 + ORR1A3 LTR MaLR 247 355 -39 6 649 36012 37 1 0 chr9 8466949 8473438 -115602734 + L1Md_T LINE L1 1 5589 -297 6 649 9496 9 0 0 chr9 8473438 8474493 -115601679 + L1Md_T LINE L1 5590 6585 0 6 649 1000 147 34 6 chr9 8474604 8474782 -115601390 + RLTR16 LTR ERVK 264 446 -59 6 649 265 324 12 92 chr9 8475399 8475562 -115600610 - RMER12 LTR ERVK -467 855 706 6 649 799 74 0 90 chr9 8476129 8476262 -115599910 + L1_Mus1 LINE L1 6447 6567 0 6 649 291 104 0 0 chr9 8476552 8476600 -115599572 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 6 649 307 207 0 0 chr9 8477200 8477258 -115598914 + ID_B1 SINE B4 167 224 0 6 649 338 349 36 0 chr9 8477325 8477517 -115598655 + L1M2 LINE L1 2417 2615 -4234 6 649 36061 45 0 3 chr9 8477513 8482752 -115593420 + L1Md_T LINE L1 272 5589 -297 6 649 8878 42 0 0 chr9 8482753 8483748 -115592424 + L1Md_T LINE L1 5591 6585 0 6 649 478 311 136 14 chr9 8483905 8484273 -115591899 + L1_Rod LINE L1 2070 2482 -3365 6 649 7668 96 46 1 chr9 8484305 8486094 -115590078 + L1_Mus3 LINE L1 4765 6635 -3 6 649 378 309 40 0 chr9 8486456 8486605 -115589567 + L1M2 LINE L1 3274 3428 -3417 6 649 22 0 0 0 chr9 8487289 8487311 -115588861 + GC_rich Low_complexity Low_complexity 1 22 0 6 649 290 319 0 0 chr9 8487482 8487551 -115588621 - RSINE1 SINE B4 -18 147 79 6 649 210 345 51 17 chr9 8487634 8487752 -115588420 - B4A SINE B4 -169 123 2 6 649 525 16 0 0 chr9 8488448 8488510 -115587662 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 649 285 29 0 0 chr9 8488510 8488543 -115587629 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 649 325 346 102 8 chr9 8488848 8488976 -115587196 - B1F SINE Alu -6 143 4 6 649 814 269 41 0 chr9 8489188 8489385 -115586787 + MLT1B LTR MaLR 167 371 -19 6 649 1669 150 47 139 chr9 8490088 8490151 -115586021 - ORR1B1 LTR MaLR -23 371 323 6 649 2825 132 16 12 chr9 8490151 8490574 -115585598 + Lx4A LINE L1 6633 7057 -1 6 649 1669 150 47 139 chr9 8490574 8490913 -115585259 - ORR1B1 LTR MaLR -72 322 6 6 649 559 295 102 41 chr9 8491223 8491629 -115584543 + RMER15 LTR ERVL 5 560 -15 6 649 396 0 0 0 chr9 8492276 8492320 -115583852 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 6 649 37 39 0 0 chr9 8492583 8492634 -115583538 + AT_rich Low_complexity Low_complexity 1 51 0 6 649 1516 52 10 5 chr9 8492681 8492874 -115583298 + L1_Mus1 LINE L1 6269 6462 -105 6 649 351 150 0 0 chr9 8492995 8493055 -115583117 + (CGA)n Simple_repeat Simple_repeat 2 61 0 6 649 752 284 39 32 chr9 8493578 8493623 -115582549 - B3A SINE B2 0 216 174 6 649 384 71 0 0 chr9 8493623 8493679 -115582493 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 649 752 269 42 16 chr9 8493679 8493850 -115582322 - B3A SINE B2 -25 173 1 6 649 224 303 10 20 chr9 8494955 8495056 -115581116 + (TATG)n Simple_repeat Simple_repeat 2 101 0 6 649 219 69 0 0 chr9 8495056 8495085 -115581087 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 6 649 498 33 0 0 chr9 8495438 8495498 -115580674 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 649 7711 69 5 1 chr9 8496154 8497556 -115578616 - L1_Mus2 LINE L1 0 6566 5161 6 649 221 197 0 16 chr9 8498851 8498913 -115577259 + CT-rich Low_complexity Low_complexity 6 66 0 6 649 859 156 233 0 chr9 8499122 8499302 -115576870 - URR1A DNA MER1_type 0 226 5 6 649 375 341 16 8 chr9 8499331 8499458 -115576714 - MER2 DNA MER2_type -3 342 215 6 649 351 297 8 0 chr9 8499610 8499728 -115576444 - MER2 DNA MER2_type -121 224 106 6 649 265 322 25 25 chr9 8500028 8500146 -115576026 - LTR33A LTR ERVL -30 490 373 1 649 2037 127 153 36 chr9 8500356 8500741 -115575431 - RLTR23 LTR ERV1 0 430 1 2 649 919 284 56 32 chr9 8501409 8501693 -115574479 - B4 SINE B4 0 292 2 3 649 1324 260 70 22 chr9 8502636 8502994 -115573178 - MTEa LTR MaLR 0 379 5 4 649 227 314 75 101 chr9 8503325 8503513 -115572659 - LTR33A_ LTR ERVL -13 518 336 5 649 267 324 32 105 chr9 8503572 8503696 -115572476 - LTR33A_ LTR ERVL -297 234 120 5 649 249 257 27 13 chr9 8503927 8504002 -115572170 + Lx9 LINE L1 5840 5915 -1729 6 649 472 245 46 0 chr9 8504391 8504542 -115571630 - L1MA8 LINE L1 -44 6247 6090 7 649 205 323 8 23 chr9 8504550 8504683 -115571489 + (TTTA)n Simple_repeat Simple_repeat 1 131 0 8 649 602 79 11 0 chr9 8504728 8504817 -115571355 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 9 649 398 296 17 0 chr9 8504818 8504933 -115571239 - PB1D10 SINE Alu 0 117 1 1 649 434 273 119 5 chr9 8505577 8505787 -115570385 - L1MA5 LINE L1 -22 6278 6045 1 649 374 363 104 32 chr9 8506208 8506555 -115569617 - MLT2B3 LTR ERVL -65 489 118 1 649 22 0 0 0 chr9 8506568 8506590 -115569582 + AT_rich Low_complexity Low_complexity 1 22 0 1 649 4153 43 6 0 chr9 8506590 8507097 -115569075 - L1Md_F2 LINE L1 -2 6580 6071 1 649 2330 47 0 3 chr9 8507097 8507397 -115568775 + L1Md_F2 LINE L1 5765 6063 -519 1 649 3504 15 2 2 chr9 8508039 8508435 -115567737 + MTA_Mm LTR MaLR 1 396 0 1 649 2415 172 95 19 chr9 8509738 8510223 -115565949 + RMER5 LTR ERV1 13 534 0 1 649 823 247 22 0 chr9 8510327 8510505 -115565667 + Lx8 LINE L1 7124 7305 -168 1 649 181 291 73 0 chr9 8511359 8511414 -115564758 - MIRm SINE MIR -182 94 36 1 649 270 0 0 0 chr9 8512247 8512277 -115563895 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 649 24 0 0 0 chr9 8512856 8512880 -115563292 + AT_rich Low_complexity Low_complexity 1 24 0 2 649 882 292 15 0 chr9 8512999 8513194 -115562978 - ID_B1 SINE B4 -21 203 6 2 649 366 123 0 0 chr9 8513610 8513667 -115562505 + (T)n Simple_repeat Simple_repeat 1 57 0 2 649 378 0 0 0 chr9 8514990 8515032 -115561140 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 649 188 122 24 0 chr9 8515420 8515461 -115560711 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 2 649 895 299 96 11 chr9 8515783 8515986 -115560186 + MTE2a LTR MaLR 1 220 -199 2 649 258 32 0 0 chr9 8515986 8516017 -115560155 + (CAG)n Simple_repeat Simple_repeat 2 32 0 2 649 895 281 88 3 chr9 8516017 8516197 -115559975 + MTE2a LTR MaLR 179 376 -3 2 649 443 314 88 17 chr9 8517463 8517703 -115558469 + L1MEb LINE L1 317 573 -5521 2 649 351 317 50 8 chr9 8517768 8517889 -115558283 + B4A SINE B4 132 257 -35 2 649 377 342 100 22 chr9 8517899 8518108 -115558064 + L1MEb LINE L1 937 1169 -5031 2 649 192 40 0 0 chr9 8518108 8518133 -115558039 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 649 377 342 100 22 chr9 8518133 8518192 -115557980 + L1MEb LINE L1 1170 1226 -4974 2 649 412 346 148 5 chr9 8518383 8518572 -115557600 - MER58A DNA MER1_type -7 217 2 3 649 238 285 80 23 chr9 8518664 8518840 -115557332 + L1MC4 LINE L1 6988 7173 -869 3 649 443 304 48 0 chr9 8518896 8519021 -115557151 + B1F SINE Alu 9 139 -10 3 649 270 247 22 0 chr9 8519078 8519167 -115557005 + L1MC4 LINE L1 7162 7252 -790 3 81 1792 125 4 25 chr9 8519473 8519752 -115556420 - ORR1A2 LTR MaLR -8 319 47 3 650 4693 148 69 38 chr9 8519752 8520680 -115555492 - RMER17B LTR ERVK 0 958 2 3 650 1679 159 3 74 chr9 8520680 8520726 -115555446 - ORR1A2 LTR MaLR -273 73 36 3 650 9562 138 113 13 chr9 8520726 8522506 -115553666 - ORR1A2-int LTR MaLR -2 1961 3 3 650 2245 110 3 3 chr9 8522511 8522830 -115553342 - ORR1A2 LTR MaLR -8 319 1 3 650 666 287 28 23 chr9 8522958 8523172 -115553000 - B3 SINE B2 0 216 2 3 650 1258 217 107 23 chr9 8523682 8523879 -115552293 - ORR1D1 LTR MaLR 0 374 178 3 650 660 26 0 0 chr9 8523879 8523957 -115552215 + (GA)n Simple_repeat Simple_repeat 2 79 0 3 650 1258 217 107 23 chr9 8523957 8524104 -115552068 - ORR1D1 LTR MaLR -197 177 1 3 650 183 139 0 0 chr9 8524137 8524173 -115551999 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 650 1006 117 0 14 chr9 8524173 8524321 -115551851 - B1_Mus1 SINE Alu -1 147 2 3 650 4725 141 19 42 chr9 8524341 8525065 -115551107 + L1VL2 LINE L1 473 1205 -5429 4 650 1083 100 0 0 chr9 8525065 8525205 -115550967 + B1_Mus1 SINE Alu 1 140 -8 4 650 14488 103 18 7 chr9 8525205 8527007 -115549165 + L1VL2 LINE L1 1206 2994 -920 4 650 341 43 21 0 chr9 8527007 8527054 -115549118 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 650 14488 130 16 6 chr9 8527054 8528108 -115548064 + L1VL2 LINE L1 2995 4055 -1828 4 650 1609 137 10 40 chr9 8528106 8528410 -115547762 + Lx LINE L1 6308 6602 -52 4 650 207 0 0 0 chr9 8528416 8528439 -115547733 + (T)n Simple_repeat Simple_repeat 1 23 0 4 650 1310 80 0 26 chr9 8528490 8528682 -115547490 - L1Md_F2 LINE L1 -10 6572 6386 4 650 431 35 17 0 chr9 8528684 8528742 -115547430 + L1Md_F2 LINE L1 6267 6325 -257 4 650 15157 169 45 23 chr9 8528741 8529613 -115546559 - L1VL4 LINE L1 -1271 4615 3661 4 650 1075 122 0 0 chr9 8529613 8529760 -115546412 - B1_Mm SINE Alu 0 147 1 4 650 15157 166 39 25 chr9 8529760 8532877 -115543295 - L1VL4 LINE L1 -2226 3660 562 4 650 507 316 120 0 chr9 8533007 8533165 -115543007 - B3A SINE B2 -20 178 2 4 650 230 259 19 0 chr9 8533610 8533664 -115542508 + PB1D10 SINE Alu 12 66 -51 4 650 290 270 115 39 chr9 8533757 8533861 -115542311 - MTEa LTR MaLR 0 379 268 5 650 1069 200 296 3 chr9 8534707 8535028 -115541144 + MTD LTR MaLR 3 417 -2 5 650 1014 157 0 0 chr9 8535769 8535947 -115540225 + CT-rich Low_complexity Low_complexity 1 178 0 5 650 28776 89 18 5 chr9 8535958 8537211 -115538961 - L1_Mus1 LINE L1 -1 6566 5300 5 650 6466 60 1 21 chr9 8537211 8538050 -115538122 + RLTR13B2 LTR ERVK 1 822 0 5 650 28776 115 5 25 chr9 8538050 8542776 -115533396 - L1_Mus1 LINE L1 -584 5299 675 5 650 507 240 32 0 chr9 8542876 8543001 -115533171 - B1F SINE Alu -5 144 16 5 650 381 291 28 50 chr9 8543001 8543013 -115533159 - ID_B1 SINE B4 -1 219 86 5 650 218 145 32 0 chr9 8543186 8543248 -115532924 + (TCTG)n Simple_repeat Simple_repeat 3 66 0 5 650 422 313 151 17 chr9 8543248 8543499 -115532673 - B4A SINE B4 0 292 17 5 650 201 121 0 0 chr9 8545181 8545214 -115530958 + (CAA)n Simple_repeat Simple_repeat 2 34 0 5 650 332 345 32 43 chr9 8545755 8545943 -115530229 - L1MB7 LINE L1 -19 6165 5980 6 650 562 245 362 15 chr9 8545996 8546201 -115529971 - B4A SINE B4 -15 277 2 6 650 274 288 88 0 chr9 8546234 8546314 -115529858 - MER5A1 DNA MER1_type -5 161 75 6 650 217 283 0 0 chr9 8546489 8546535 -115529637 + PB1 SINE Alu 76 121 -6 6 650 240 143 0 0 chr9 8547284 8547326 -115528846 + (T)n Simple_repeat Simple_repeat 1 42 0 6 650 1032 64 126 60 chr9 8547531 8547713 -115528459 - B2_Mm2 SINE B2 -1 194 1 6 650 271 273 12 49 chr9 8548453 8548534 -115527638 + ID4 SINE ID 3 80 -3 6 650 735 335 48 45 chr9 8549337 8549628 -115526544 - B4A SINE B4 0 292 1 6 650 308 272 246 0 chr9 8549826 8549940 -115526232 - B1F SINE Alu -7 142 1 6 650 504 224 137 18 chr9 8551533 8551701 -115524471 - Lx4B LINE L1 -5 7053 6866 6 650 650 201 11 6 chr9 8551676 8551833 -115524339 + Lx4B LINE L1 6666 6850 -208 6 650 318 328 25 0 chr9 8551995 8552117 -115524055 - Kanga1d DNA Tc2 -254 355 231 7 650 715 231 77 6 chr9 8552181 8552351 -115523821 - B3A SINE B2 -16 182 1 7 650 225 0 0 0 chr9 8552360 8552385 -115523787 + (T)n Simple_repeat Simple_repeat 1 25 0 7 650 2444 266 81 54 chr9 8552391 8553797 -115522375 - Lx9 LINE L1 -321 7323 5706 7 650 324 0 0 0 chr9 8553876 8553912 -115522260 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 650 223 310 80 0 chr9 8554217 8554330 -115521842 - MIR SINE MIR -54 208 87 7 650 767 270 90 0 chr9 8554455 8554644 -115521528 - B3 SINE B2 -5 211 6 7 650 288 364 62 17 chr9 8554667 8554846 -115521326 - MIR SINE MIR 0 262 76 7 650 225 370 0 0 chr9 8555292 8555365 -115520807 + MER5A DNA MER1_type 44 116 -73 7 650 425 363 39 10 chr9 8555708 8555911 -115520261 - MIR SINE MIR -28 234 26 7 650 474 18 0 0 chr9 8556251 8556306 -115519866 + (TCC)n Simple_repeat Simple_repeat 3 57 0 8 650 282 250 18 9 chr9 8556655 8556764 -115519408 + (TA)n Simple_repeat Simple_repeat 2 111 0 8 650 21 0 0 0 chr9 8558451 8558472 -115517700 + AT_rich Low_complexity Low_complexity 1 21 0 8 650 454 312 11 34 chr9 8560547 8560726 -115515446 - Lx8 LINE L1 -114 7359 7185 8 650 198 0 0 0 chr9 8561306 8561328 -115514844 + (A)n Simple_repeat Simple_repeat 1 22 0 8 650 227 200 30 150 chr9 8561355 8561455 -115514717 + RLTR19 LTR ERVK 78 165 -334 8 650 516 345 118 35 chr9 8562109 8562514 -115513658 - LTR40b LTR ERVL 0 462 24 8 650 298 217 0 16 chr9 8562582 8562643 -115513529 + Lx8 LINE L1 7089 7148 -325 8 650 187 349 194 37 chr9 8562691 8563093 -115513079 - L2 LINE L2 -388 3031 2567 8 650 315 341 51 17 chr9 8563330 8563506 -115512666 - L2 LINE L2 -1366 2053 1872 8 650 6441 160 114 10 chr9 8564513 8565143 -115511029 + Lx6 LINE L1 5199 5898 -1562 8 650 1855 204 41 88 chr9 8565143 8565610 -115510562 + RLTR41 LTR ERV1 1 445 -1 9 650 6441 212 86 62 chr9 8565610 8566310 -115509862 + Lx6 LINE L1 5899 6681 -779 8 650 278 26 26 0 chr9 8566310 8566349 -115509823 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 9 650 6441 212 86 62 chr9 8566349 8567158 -115509014 + Lx6 LINE L1 6682 7442 -18 8 650 1205 61 0 7 chr9 8567163 8567312 -115508860 - B1_Mus1 SINE Alu 0 148 1 9 650 278 327 72 0 chr9 8567465 8567673 -115508499 - L1ME3B LINE L1 -325 5915 5693 9 650 538 336 59 13 chr9 8567761 8568020 -115508152 + B4 SINE B4 13 292 0 9 650 489 288 93 52 chr9 8568044 8568216 -115507956 + B4 SINE B4 27 205 -87 9 650 224 135 27 0 chr9 8568224 8568261 -115507911 + RSINE1 SINE B4 92 129 -36 9 650 269 337 24 0 chr9 8568328 8568411 -115507761 - Charlie5 DNA MER1_type -2537 87 3 9 650 374 345 7 7 chr9 8568607 8568747 -115507425 - MLT1B LTR MaLR 0 467 328 9 650 468 299 52 76 chr9 8568745 8568955 -115507217 - MLT1B LTR MaLR -185 205 1 9 650 316 286 0 13 chr9 8569110 8569188 -115506984 + RSINE1 SINE B4 4 80 -85 9 650 216 200 16 32 chr9 8569220 8569282 -115506890 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 1 650 529 225 0 18 chr9 8569483 8569611 -115506561 + B1_Mur2 SINE Alu 2 120 0 1 650 440 358 75 57 chr9 8569653 8570067 -115506105 - L1ME3B LINE L1 -1021 5125 4708 9 650 213 39 0 0 chr9 8570067 8570093 -115506079 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 650 440 358 75 57 chr9 8570093 8570119 -115506053 - L1ME3B LINE L1 -1439 4707 4679 9 650 354 94 0 0 chr9 8570121 8570148 -115506024 + (A)n Simple_repeat Simple_repeat 1 27 0 1 650 961 102 0 109 chr9 8570148 8570313 -115505859 + B1_Mus2 SINE Alu 1 147 0 1 650 354 94 0 0 chr9 8570313 8570338 -115505834 + (A)n Simple_repeat Simple_repeat 1 25 0 1 650 270 115 0 0 chr9 8570386 8570438 -115505734 + (T)n Simple_repeat Simple_repeat 1 52 0 1 650 2953 29 3 0 chr9 8570634 8570979 -115505193 + ORR1A1 LTR MaLR 1 346 0 1 650 13031 69 20 3 chr9 8570979 8572741 -115503431 + ORR1A1-int LTR MaLR 1 1792 0 1 650 2672 45 42 0 chr9 8572741 8573073 -115503099 + ORR1A1 LTR MaLR 1 346 0 1 650 222 415 15 23 chr9 8573073 8573206 -115502966 - MIRc SINE MIR -108 160 29 1 650 268 224 34 45 chr9 8573714 8573803 -115502369 - L1M5 LINE L1 -537 5642 5555 1 650 1043 211 9 37 chr9 8573941 8574158 -115502014 - B3 SINE B2 0 216 6 1 650 243 0 0 0 chr9 8574209 8574236 -115501936 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 650 1083 72 7 0 chr9 8574236 8574374 -115501798 - B1_Mus1 SINE Alu -9 139 1 1 650 180 0 0 0 chr9 8574457 8574477 -115501695 + (T)n Simple_repeat Simple_repeat 1 20 0 1 650 214 120 59 20 chr9 8575085 8575136 -115501036 + A-rich Low_complexity Low_complexity 6 58 0 1 650 23639 92 62 59 chr9 8576060 8578870 -115497302 - L1Md_F2 LINE L1 -2 6580 3745 1 650 276 29 0 0 chr9 8578870 8578905 -115497267 + ORR1A0-int LTR MaLR 1758 1792 0 1 650 3048 20 0 6 chr9 8578905 8579253 -115496919 + ORR1A0 LTR MaLR 1 346 0 1 650 23639 101 66 78 chr9 8579253 8582778 -115493394 - L1Md_F2 LINE L1 -2139 3744 248 1 650 600 284 35 0 chr9 8582884 8583025 -115493147 + RSINE1 SINE B4 20 165 0 1 650 303 93 0 0 chr9 8583031 8583074 -115493098 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1 650 225 154 0 0 chr9 8583508 8583547 -115492625 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 650 25 0 0 0 chr9 8583615 8583640 -115492532 + AT_rich Low_complexity Low_complexity 1 25 0 1 650 303 148 211 22 chr9 8584053 8584143 -115492029 + L1MA6 LINE L1 6042 6148 -152 1 650 735 369 17 20 chr9 8584171 8584464 -115491708 + B4A SINE B4 1 292 0 1 650 234 365 0 20 chr9 8585128 8585226 -115490946 + B2_Mm2 SINE B2 8 103 -92 1 650 453 90 0 0 chr9 8585278 8585345 -115490827 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 650 247 403 7 14 chr9 8586410 8586551 -115489621 - MIRb SINE MIR -76 192 53 1 650 613 254 141 37 chr9 8587039 8587337 -115488835 - Lx8 LINE L1 -141 7332 7004 1 650 266 318 40 20 chr9 8587526 8587725 -115488447 - L1MA5A LINE L1 -380 5917 5715 1 650 4543 83 0 0 chr9 8587826 8588467 -115487705 + L1VL2 LINE L1 290 930 -5405 1 650 4284 121 9 87 chr9 8588467 8589297 -115486875 + RMER17A LTR ERVK 1 751 0 1 650 5318 78 47 9 chr9 8589297 8590166 -115486006 + MusHAL1 LINE L1 22 923 -1789 1 650 316 256 32 43 chr9 8590304 8590398 -115485774 - PB1D10 SINE Alu 0 117 25 1 650 22 56 0 0 chr9 8590700 8590736 -115485436 + AT_rich Low_complexity Low_complexity 1 36 0 1 650 181 255 0 19 chr9 8590885 8590937 -115485235 - L3 LINE CR1 -3483 1006 956 1 650 576 106 0 0 chr9 8591570 8591655 -115484517 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 1 650 252 0 0 0 chr9 8592060 8592088 -115484084 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 650 364 287 166 35 chr9 8592357 8592717 -115483455 + MLT2B4 LTR ERVL 124 678 0 1 650 424 301 36 36 chr9 8593068 8593206 -115482966 + RSINE1 SINE B4 28 165 0 1 650 338 233 0 0 chr9 8593269 8593342 -115482830 - ID4_ SINE ID -10 73 1 1 650 369 327 39 0 chr9 8593963 8594116 -115482056 + Lx7 LINE L1 7132 7290 -406 1 650 267 246 0 42 chr9 8594184 8594256 -115481916 + GA-rich Low_complexity Low_complexity 1 69 0 1 650 207 0 0 0 chr9 8594370 8594393 -115481779 + (CTAA)n Simple_repeat Simple_repeat 3 25 0 1 650 198 0 0 0 chr9 8594393 8594415 -115481757 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 650 342 0 0 0 chr9 8594415 8594453 -115481719 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 650 7117 67 3 18 chr9 8594834 8595783 -115480389 + L1Md_F2 LINE L1 5648 6582 0 1 650 231 36 0 0 chr9 8596189 8596217 -115479955 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 1 650 829 250 82 19 chr9 8596287 8596605 -115479567 - Lx8 LINE L1 -122 7351 7014 1 650 285 251 25 35 chr9 8596908 8597029 -115479143 + B3 SINE B2 2 164 -52 1 650 1020 17 0 0 chr9 8597729 8597847 -115478325 + (CA)n Simple_repeat Simple_repeat 2 119 0 1 650 244 111 37 0 chr9 8598128 8598182 -115477990 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 650 372 119 0 0 chr9 8598182 8598241 -115477931 + (TATG)n Simple_repeat Simple_repeat 4 62 0 1 650 918 263 72 76 chr9 8598244 8598724 -115477448 - MT2B LTR ERVL -55 546 1 1 650 399 324 7 20 chr9 8598793 8598941 -115477231 + B4A SINE B4 129 274 -18 1 650 21 0 0 0 chr9 8598970 8598991 -115477181 + AT_rich Low_complexity Low_complexity 1 21 0 1 650 1262 212 28 21 chr9 8598992 8599276 -115476896 - RLTR11A LTR ERVK -16 512 227 1 650 430 271 106 71 chr9 8599278 8599638 -115476534 + RLTR16 LTR ERVK 1 424 -268 1 650 719 230 78 57 chr9 8599899 8600129 -115476043 - RLTR11A LTR ERVK -287 241 7 1 650 447 276 75 23 chr9 8601117 8601291 -115474881 + Lx8 LINE L1 6601 6783 -690 1 650 926 261 62 14 chr9 8601348 8601775 -115474397 - L1MA6 LINE L1 -68 6223 5764 1 650 756 141 457 34 chr9 8601911 8602145 -115474027 - Lx LINE L1 -3 6651 6319 1 650 23 0 0 0 chr9 8602651 8602674 -115473498 + AT_rich Low_complexity Low_complexity 1 23 0 1 650 547 305 35 0 chr9 8602702 8602876 -115473296 - B3A SINE B2 -17 181 2 1 650 375 23 0 0 chr9 8604961 8605005 -115471167 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 650 357 103 24 0 chr9 8605320 8605387 -115470785 - B1_Mus2 SINE Alu 0 149 80 1 650 27 0 0 0 chr9 8605884 8605911 -115470261 + AT_rich Low_complexity Low_complexity 1 27 0 1 650 729 236 28 11 chr9 8606276 8606452 -115469720 + B3A SINE B2 2 180 -18 1 650 759 22 0 0 chr9 8606681 8606770 -115469402 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 650 472 257 61 27 chr9 8607231 8607379 -115468793 + RSINE1 SINE B4 13 165 0 1 650 258 32 0 0 chr9 8607388 8607419 -115468753 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1 650 930 159 27 51 chr9 8607822 8608035 -115468137 + ORR1C2 LTR MaLR 163 384 0 1 650 532 178 179 19 chr9 8608035 8608129 -115468043 + Lx9 LINE L1 7395 7516 -128 1 650 186 43 0 0 chr9 8608129 8608152 -115468020 + (TATATG)n Simple_repeat Simple_repeat 5 27 0 1 650 532 178 179 19 chr9 8608152 8608269 -115467903 + Lx9 LINE L1 7517 7639 -5 1 650 1021 280 16 121 chr9 8608945 8609368 -115466804 - MTE2a LTR MaLR 0 379 1 1 650 847 312 36 76 chr9 8610780 8611082 -115465090 - B4A SINE B4 -2 290 1 1 650 327 104 0 0 chr9 8611227 8611275 -115464897 + (CAAG)n Simple_repeat Simple_repeat 3 50 0 1 650 27610 106 22 6 chr9 8611717 8617032 -115459140 - L1_Mus2 LINE L1 0 6566 1160 1 650 32 43 0 0 chr9 8617035 8617081 -115459091 + AT_rich Low_complexity Low_complexity 1 46 0 1 650 6312 53 8 9 chr9 8617081 8617931 -115458241 - L1Md_F2 LINE L1 -16 6566 5718 1 650 2648 186 13 8 chr9 8617937 8618506 -115457666 - L1_Mus2 LINE L1 -5411 1205 201 1 650 451 182 9 100 chr9 8618698 8618808 -115457364 - B2_Mm2 SINE B2 -95 100 1 1 650 612 0 0 0 chr9 8619100 8619168 -115457004 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 1 650 3924 86 20 9 chr9 8619294 8619843 -115456329 - L1Md_F2 LINE L1 -13 6569 6015 1 650 32097 79 4 6 chr9 8619850 8625269 -115450903 - L1Md_F LINE L1 0 5883 476 1 650 309 302 80 48 chr9 8625495 8625620 -115450552 - B1_Mus1 SINE Alu -13 135 7 1 650 414 0 0 0 chr9 8625645 8625691 -115450481 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 650 335 333 11 0 chr9 8625817 8625904 -115450268 + ID_B1 SINE B4 81 168 -56 1 650 328 277 49 10 chr9 8625827 8625929 -115450243 + PB1D10 SINE Alu 10 115 -2 1 650 280 164 30 0 chr9 8625939 8626006 -115450166 + GA-rich Low_complexity Low_complexity 2 70 0 1 650 26 0 0 0 chr9 8626281 8626307 -115449865 + AT_rich Low_complexity Low_complexity 1 26 0 1 650 227 285 139 51 chr9 8626318 8626455 -115449717 + B1F SINE Alu 1 149 0 1 650 681 199 81 27 chr9 8627206 8627392 -115448780 - B3A SINE B2 0 198 3 1 650 21 0 0 0 chr9 8627417 8627438 -115448734 + AT_rich Low_complexity Low_complexity 1 21 0 1 650 523 236 0 54 chr9 8627866 8627978 -115448194 + B3A SINE B2 1 106 -92 1 650 206 176 39 0 chr9 8627978 8628029 -115448143 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 650 245 243 0 169 chr9 8628029 8628118 -115448054 + B3A SINE B2 109 182 -16 1 650 372 206 14 7 chr9 8628118 8628265 -115447907 + (CA)n Simple_repeat Simple_repeat 1 148 0 1 650 3189 25 0 0 chr9 8628269 8628636 -115447536 + IAPLTR1_Mm LTR ERVK 1 367 0 1 650 953 86 159 0 chr9 8628636 8628799 -115447373 + IAPEz-int LTR ERVK 8 196 -6285 1 650 6826 76 121 31 chr9 8628770 8629964 -115446208 + IAPEz-int LTR ERVK 67 1313 -5168 1 650 27671 19 1 2 chr9 8629963 8633239 -115442933 + IAPEz-int LTR ERVK 3210 6481 0 1 650 3189 25 0 0 chr9 8633239 8633606 -115442566 + IAPLTR1_Mm LTR ERVK 1 367 0 1 650 726 285 135 14 chr9 8634318 8634816 -115441356 - Lx8 LINE L1 0 7473 6916 1 650 1509 178 119 6 chr9 8635116 8635427 -115440745 - ORR1A1 LTR MaLR 0 346 1 1 650 5799 137 42 50 chr9 8635427 8636424 -115439748 - ORR1A1-int LTR MaLR 0 1963 975 1 650 1102 220 0 10 chr9 8636425 8636627 -115439545 - ORR1A1 LTR MaLR -127 219 20 1 650 319 361 0 0 chr9 8636828 8636911 -115439261 - ID4_ SINE ID 0 83 1 1 650 377 241 121 2 chr9 8636919 8637027 -115439145 - PB1 SINE Alu -3 124 2 1 650 511 178 35 12 chr9 8637726 8637897 -115438275 + (TG)n Simple_repeat Simple_repeat 1 175 0 1 650 189 107 0 0 chr9 8637954 8637982 -115438190 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 650 422 293 0 131 chr9 8638013 8638166 -115438006 - RSINE1 SINE B4 -32 133 1 2 650 247 395 16 16 chr9 8638417 8638538 -115437634 - MIR SINE MIR -105 157 37 2 650 1308 277 29 34 chr9 8639376 8639820 -115436352 + Lx9 LINE L1 6751 7192 -452 2 650 3213 230 50 41 chr9 8639914 8641044 -115435128 - L1_Rod LINE L1 -1623 4224 3084 2 650 661 239 41 174 chr9 8641089 8641525 -115434647 + L1_Rod LINE L1 2456 2833 -3014 2 650 236 212 169 36 chr9 8642036 8642119 -115434053 + L1M2 LINE L1 2984 3077 -3066 2 650 21 0 0 0 chr9 8642128 8642149 -115434023 + AT_rich Low_complexity Low_complexity 1 21 0 2 650 23 33 0 0 chr9 8642257 8642287 -115433885 + AT_rich Low_complexity Low_complexity 1 30 0 2 650 806 266 10 40 chr9 8643093 8643293 -115432879 - B3A SINE B2 0 198 5 2 650 294 29 0 0 chr9 8643437 8643472 -115432700 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 650 186 350 147 5 chr9 8644362 8644546 -115431626 - L2c LINE L2 -4 3383 3174 2 650 25 0 0 0 chr9 8645843 8645868 -115430304 + AT_rich Low_complexity Low_complexity 1 25 0 2 650 568 342 16 31 chr9 8649819 8650012 -115426160 - B3A SINE B2 0 198 9 2 650 959 120 11 17 chr9 8650406 8650584 -115425588 + (TTCTC)n Simple_repeat Simple_repeat 2 178 0 2 650 777 224 0 14 chr9 8650588 8650733 -115425439 - B1_Mur3 SINE Alu -6 143 1 2 651 856 251 136 11 chr9 8650863 8651245 -115424927 + L1MA7 LINE L1 5782 6211 -80 2 651 227 31 31 0 chr9 8651433 8651465 -115424707 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 651 3316 56 2 2 chr9 8653667 8654114 -115422058 - L1_Mus1 LINE L1 -423 6144 5698 2 651 3097 56 33 0 chr9 8654114 8654505 -115421667 + L1_Mus1 LINE L1 6164 6567 0 2 651 192 77 0 0 chr9 8654508 8654534 -115421638 + (A)n Simple_repeat Simple_repeat 1 26 0 2 651 1098 81 23 6 chr9 8655608 8655781 -115420391 + L1_Mus3 LINE L1 6459 6634 -4 2 651 397 312 104 0 chr9 8655839 8655964 -115420208 - ID_B1 SINE B4 -4 220 83 2 651 426 292 0 26 chr9 8655995 8656111 -115420061 + PB1D10 SINE Alu 3 115 -2 2 651 210 71 0 0 chr9 8656234 8656262 -115419910 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2 651 252 0 0 0 chr9 8657228 8657256 -115418916 + (A)n Simple_repeat Simple_repeat 1 28 0 2 651 680 265 31 4 chr9 8658441 8658624 -115417548 + B3 SINE B2 8 193 0 2 651 1752 130 14 0 chr9 8659567 8659860 -115416312 + L1_Mur2 LINE L1 4229 4525 -1352 2 651 3636 136 8 14 chr9 8659847 8660474 -115415698 + L1_Mm LINE L1 5169 5791 -92 2 651 12998 135 8 25 chr9 8660691 8663562 -115412610 + L1_Mus3 LINE L1 609 3339 -575 2 651 31085 9 2 0 chr9 8663560 8668640 -115407532 + L1Md_A LINE L1 496 5586 -297 2 651 8866 13 0 0 chr9 8668640 8669636 -115406536 + L1Md_A LINE L1 5587 6582 0 2 651 15162 131 13 0 chr9 8669638 8670421 -115405751 + L1_Mus3 LINE L1 3332 4116 -1767 2 651 354 45 0 0 chr9 8670421 8670465 -115405707 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 651 15162 126 18 1 chr9 8670465 8672922 -115403250 + L1_Mus3 LINE L1 4117 6627 -11 2 651 302 269 43 0 chr9 8673465 8673558 -115402614 + MER58C DNA MER1_type 101 197 -18 2 651 262 299 10 20 chr9 8673699 8673798 -115402374 + MIRb SINE MIR 132 229 -39 2 651 423 0 0 0 chr9 8674115 8674162 -115402010 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 651 229 345 71 12 chr9 8674505 8674590 -115401582 + LTR16B1 LTR ERVL 1 90 -390 2 651 458 302 29 0 chr9 8675801 8675940 -115400232 + B1F2 SINE Alu 1 143 -6 2 651 191 310 68 29 chr9 8676191 8676294 -115399878 - MIR SINE MIR -111 151 45 2 651 211 328 17 0 chr9 8676487 8676545 -115399627 + ID4 SINE ID 11 69 -14 2 651 236 342 38 0 chr9 8678122 8678201 -115397971 - L2a LINE L2 -1 3425 3344 2 651 797 269 53 38 chr9 8678259 8678468 -115397704 + B3 SINE B2 1 212 -4 2 651 765 309 79 84 chr9 8679680 8680061 -115396111 - MTE2b LTR MaLR 0 379 1 2 651 454 261 88 22 chr9 8681046 8681183 -115394989 + ID_B1 SINE B4 79 224 0 2 651 414 0 0 0 chr9 8681285 8681331 -115394841 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 651 2655 242 18 23 chr9 8681372 8681988 -115394184 - RLTR17 LTR ERVK -74 618 6 2 651 336 48 0 0 chr9 8681988 8682030 -115394142 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 651 624 266 106 22 chr9 8682326 8682553 -115393619 + ORR1E LTR MaLR 110 355 -4 2 651 1122 261 76 48 chr9 8682675 8683061 -115393111 - MTE2a LTR MaLR -14 405 18 2 651 284 349 0 9 chr9 8683623 8683733 -115392439 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 651 12197 80 8 12 chr9 8683750 8686275 -115389897 - L1Md_F2 LINE L1 -4 6578 4051 2 651 4193 81 2 0 chr9 8686281 8686902 -115389270 - L1Md_F2 LINE L1 -3347 2536 1915 2 651 4699 141 19 36 chr9 8686871 8688106 -115388066 - L1Md_F2 LINE L1 -4431 1452 238 2 651 261 258 0 16 chr9 8688721 8688784 -115387388 - MLT1A0 LTR MaLR 0 365 304 2 651 339 339 8 0 chr9 8688815 8688933 -115387239 - MLT1A0 LTR MaLR -126 239 121 2 651 717 312 125 4 chr9 8689243 8689475 -115386697 - MTE2b LTR MaLR -119 260 1 2 651 251 246 0 16 chr9 8689496 8689558 -115386614 - MLT1A0 LTR MaLR -345 63 3 2 651 24 0 0 0 chr9 8690249 8690273 -115385899 + AT_rich Low_complexity Low_complexity 1 24 0 2 651 242 401 10 19 chr9 8690303 8690509 -115385663 + MIRb SINE MIR 56 259 -9 2 651 817 277 44 29 chr9 8690551 8690795 -115385377 + ID_B1 SINE B4 3 251 -41 2 651 235 246 68 14 chr9 8690849 8690923 -115385249 + MER117 DNA MER1_type 14 91 -106 2 651 183 129 0 0 chr9 8691604 8691635 -115384537 + (T)n Simple_repeat Simple_repeat 1 31 0 2 651 315 0 0 0 chr9 8692922 8692957 -115383215 + (CTAA)n Simple_repeat Simple_repeat 3 37 0 2 651 222 274 0 19 chr9 8694812 8694864 -115381308 + C-rich Low_complexity Low_complexity 3 53 0 2 651 408 40 0 0 chr9 8695084 8695134 -115381038 + (CCTG)n Simple_repeat Simple_repeat 2 51 0 2 651 411 322 80 33 chr9 8695140 8695291 -115380881 - RSINE1 SINE B4 -2 163 6 2 651 315 165 22 43 chr9 8695822 8696006 -115380166 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 651 194 143 31 31 chr9 8696053 8696118 -115380054 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 651 528 308 114 38 chr9 8696170 8696406 -115379766 - B4A SINE B4 -22 270 17 2 651 12910 81 4 12 chr9 8697629 8699502 -115376670 + L1Md_F2 LINE L1 3725 5582 -301 2 651 7191 80 11 13 chr9 8699504 8700495 -115375677 + L1Md_F2 LINE L1 5594 6582 0 2 651 256 282 116 29 chr9 8701894 8702033 -115374139 - L2c LINE L2 0 3375 3250 2 651 28 0 0 0 chr9 8702124 8702152 -115374020 + AT_rich Low_complexity Low_complexity 1 28 0 2 651 733 291 0 35 chr9 8702691 8702894 -115373278 - B3 SINE B2 -6 210 15 2 651 354 265 60 0 chr9 8704558 8704641 -115371531 + ID_B1 SINE B4 111 198 -26 2 651 458 61 0 15 chr9 8705332 8705399 -115370773 + (TTTTC)n Simple_repeat Simple_repeat 2 67 0 2 651 309 314 108 0 chr9 8705484 8705586 -115370586 + ID_B1 SINE B4 86 198 -26 2 651 309 314 25 0 chr9 8705614 8705732 -115370440 + GA-rich Low_complexity Low_complexity 1 121 0 2 651 251 111 47 16 chr9 8705762 8705826 -115370346 - L1Md_T LINE L1 -4 6578 6513 2 651 3084 32 56 0 chr9 8707674 8708049 -115368123 - MTA_Mm LTR MaLR 0 396 1 2 651 7897 64 3 93 chr9 8708049 8709255 -115366917 - MTA_Mm-int LTR MaLR 0 1098 1 2 651 3252 56 2 0 chr9 8709255 8709650 -115366522 - MTA_Mm LTR MaLR 0 396 1 2 651 1586 177 42 113 chr9 8709650 8710032 -115366140 + ORR1D1 LTR MaLR 5 359 -15 2 651 367 345 90 42 chr9 8710021 8710233 -115365939 - ORR1E LTR MaLR -46 313 92 2 651 279 310 42 0 chr9 8711469 8711540 -115364632 + MLT1A LTR MaLR 76 149 -216 2 651 462 233 165 0 chr9 8711557 8711690 -115364482 + MLT1A LTR MaLR 219 373 -1 2 651 501 348 43 0 chr9 8712052 8712282 -115363890 - Lx8 LINE L1 -148 7325 7086 2 651 231 308 11 42 chr9 8712736 8712831 -115363341 - RMER15 LTR ERVL -159 416 325 2 651 207 77 0 71 chr9 8713512 8713554 -115362618 + (CAAAAA)n Simple_repeat Simple_repeat 6 44 0 2 651 182 119 48 0 chr9 8713583 8713625 -115362547 + (CAGAGA)n Simple_repeat Simple_repeat 6 49 0 2 651 183 42 0 0 chr9 8713818 8713842 -115362330 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 651 21 71 0 0 chr9 8715314 8715356 -115360816 + AT_rich Low_complexity Low_complexity 1 42 0 2 651 357 82 0 0 chr9 8715457 8715506 -115360666 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 651 573 308 94 33 chr9 8715538 8715813 -115360359 - B4A SINE B4 0 292 1 2 651 288 372 32 0 chr9 8716806 8716900 -115359272 - PB1D10 SINE Alu -20 97 1 2 651 237 233 0 48 chr9 8717493 8717556 -115358616 + MLT-int LTR MaLR 1669 1728 -7 2 651 579 287 117 0 chr9 8717862 8718050 -115358122 + B3 SINE B2 1 210 -6 2 651 329 267 92 25 chr9 8718581 8718700 -115357472 - ORR1D1 LTR MaLR -239 135 9 2 651 253 274 43 26 chr9 8719185 8719301 -115356871 + B3 SINE B2 99 216 0 2 651 359 316 34 26 chr9 8719336 8719453 -115356719 + PB1D9 SINE Alu 1 118 -2 2 651 189 250 84 36 chr9 8721279 8721362 -115354810 - L3 LINE CR1 -222 4267 4181 2 651 290 250 0 0 chr9 8721839 8721911 -115354261 - L1MEc LINE L1 -4032 2368 2297 2 651 38 89 0 0 chr9 8721933 8722034 -115354138 + AT_rich Low_complexity Low_complexity 1 101 0 2 651 820 200 57 0 chr9 8722038 8722213 -115353959 - Lx6 LINE L1 -772 6688 6504 2 651 533 246 63 35 chr9 8722388 8722572 -115353600 - B3A SINE B2 -11 184 3 2 651 2716 118 0 2 chr9 8723186 8723611 -115352561 - L1_Mm LINE L1 -993 4890 4467 2 651 564 298 54 0 chr9 8723633 8723801 -115352371 + B3A SINE B2 5 181 -17 2 651 226 0 0 0 chr9 8723887 8723913 -115352259 - L1_Mus2 LINE L1 -553 6013 5988 2 651 7412 57 3 14 chr9 8723916 8725089 -115351083 + L1_Mus2 LINE L1 5434 6566 0 2 651 28 0 0 0 chr9 8725403 8725431 -115350741 + AT_rich Low_complexity Low_complexity 1 28 0 2 651 639 263 38 0 chr9 8726446 8726579 -115349593 + RSINE1 SINE B4 2 139 -26 2 651 201 318 0 0 chr9 8726992 8727055 -115349117 + T-rich Low_complexity Low_complexity 5 67 0 2 651 429 20 0 0 chr9 8727075 8727125 -115349047 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 651 1644 188 19 33 chr9 8727520 8727884 -115348288 + RLTR15 LTR ERVK 1 359 0 3 651 180 0 0 0 chr9 8728142 8728162 -115348010 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 651 223 253 10 130 chr9 8728367 8728467 -115347705 - B2_Mm2 SINE B2 -61 134 47 3 651 680 345 43 22 chr9 8730883 8731159 -115345013 - B4A SINE B4 -4 288 7 3 651 289 344 44 12 chr9 8731172 8731340 -115344832 - MIRb SINE MIR -28 180 13 3 651 230 0 33 0 chr9 8731543 8731573 -115344599 + (CCCCCT)n Simple_repeat Simple_repeat 4 34 0 3 651 653 305 5 21 chr9 8731648 8731839 -115344333 - B4A SINE B4 -2 290 103 3 651 432 0 0 0 chr9 8732018 8732066 -115344106 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 651 2661 172 19 43 chr9 8732079 8732170 -115344002 + RLTR28 LTR ERVL 2 85 -439 3 651 333 0 0 0 chr9 8732170 8732207 -115343965 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 651 2661 172 19 43 chr9 8732207 8732651 -115343521 + RLTR28 LTR ERVL 86 523 -1 3 651 962 174 32 5 chr9 8732895 8733080 -115343092 + URR1A DNA MER1_type 37 226 0 3 651 537 288 58 17 chr9 8733950 8734123 -115342049 + B3A SINE B2 1 180 -18 3 651 3056 106 2 22 chr9 8734248 8734702 -115341470 + Lx3A LINE L1 6527 6971 -10 3 651 264 122 0 0 chr9 8734703 8734744 -115341428 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 651 410 0 20 0 chr9 8735078 8735128 -115341044 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 651 275 236 181 0 chr9 8735134 8735206 -115340966 - B3A SINE B2 -47 151 67 3 651 316 340 192 28 chr9 8735236 8735554 -115340618 - L2a LINE L2 -9 3417 3048 3 651 237 33 0 0 chr9 8735978 8736008 -115340164 + (A)n Simple_repeat Simple_repeat 1 30 0 3 651 16740 65 38 4 chr9 8736140 8739202 -115336970 - L1Md_F2 LINE L1 0 6582 3416 3 651 594 0 0 0 chr9 8740631 8740697 -115335475 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 651 21 0 0 0 chr9 8741499 8741520 -115334652 + AT_rich Low_complexity Low_complexity 1 21 0 3 651 787 271 30 0 chr9 8742361 8742564 -115333608 - B3 SINE B2 -3 213 5 3 651 7554 47 4 0 chr9 8743811 8744963 -115331209 - L1Md_F2 LINE L1 0 6582 5425 3 651 543 245 104 26 chr9 8745026 8745219 -115330953 + B3 SINE B2 1 208 -8 3 651 4153 33 6 0 chr9 8745297 8745783 -115330389 - L1Md_T LINE L1 -2 6580 6092 3 651 280 307 99 35 chr9 8745846 8745988 -115330184 - MIRb SINE MIR 0 268 118 3 651 264 290 119 10 chr9 8746484 8746585 -115329587 - MIRm SINE MIR -4 272 161 3 651 245 271 0 0 chr9 8747362 8747480 -115328692 + (TA)n Simple_repeat Simple_repeat 1 118 0 3 651 681 36 0 0 chr9 8747705 8747789 -115328383 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 3 651 1914 200 30 6 chr9 8748024 8748386 -115327786 - ORR1D1 LTR MaLR -3 371 1 3 651 792 188 14 0 chr9 8748708 8748846 -115327326 - B1_Mur4 SINE Alu -1 149 10 3 651 567 212 7 22 chr9 8749090 8749225 -115326947 - Lx5 LINE L1 -422 6628 6496 3 651 2950 45 24 0 chr9 8749256 8749637 -115326535 + RLTR10A LTR ERVK 1 390 -21 3 651 1786 150 3 3 chr9 8749641 8749935 -115326237 + Lx5 LINE L1 6189 6482 -568 3 651 3937 234 18 13 chr9 8749943 8750845 -115325327 - Lx5 LINE L1 -6 7044 6139 3 651 900 173 171 8 chr9 8750835 8751080 -115325092 + Lx7 LINE L1 7394 7678 -18 3 651 231 88 0 0 chr9 8751426 8751460 -115324712 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 651 327 25 0 0 chr9 8751501 8751541 -115324631 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 651 436 359 143 38 chr9 8753631 8753973 -115322199 + L1MEc LINE L1 3 380 -6020 3 651 467 311 25 8 chr9 8754265 8754385 -115321787 - RSINE1 SINE B4 -43 122 1 3 651 370 346 49 56 chr9 8758047 8758191 -115317981 - RSINE1 SINE B4 -21 144 2 3 651 1980 160 22 78 chr9 8759097 8759510 -115316662 + ORR1B1 LTR MaLR 5 394 0 3 651 8590 168 52 92 chr9 8759510 8761556 -115314616 + ORR1B1-int LTR MaLR 1 1963 0 3 651 1471 138 44 194 chr9 8761556 8761943 -115314229 + ORR1B1 LTR MaLR 1 329 0 3 651 347 114 191 11 chr9 8762869 8762958 -115313214 - Lx9 LINE L1 -2 7642 7538 3 651 303 355 8 101 chr9 8764496 8764615 -115311557 - B4A SINE B4 -150 142 35 3 651 326 155 0 0 chr9 8764621 8764679 -115311493 - L1_Mur3 LINE L1 -6763 949 892 3 651 1965 239 148 34 chr9 8764679 8765212 -115310960 - RMER19B LTR ERVK 0 902 309 3 651 516 237 17 0 chr9 8765233 8765351 -115310821 - L1_Mur3 LINE L1 -6815 897 778 3 651 1861 185 12 29 chr9 8765379 8765796 -115310376 + RMER17C LTR ERVK 1 410 0 3 651 345 287 64 41 chr9 8765798 8766016 -115310156 - L1_Mur3 LINE L1 -7174 538 316 3 651 6494 194 69 23 chr9 8766056 8767756 -115308416 + L1_Mur3 LINE L1 2447 4225 -1655 3 651 2790 238 96 42 chr9 8767754 8767889 -115308283 + L1VL4 LINE L1 23 289 -6013 3 651 940 55 0 0 chr9 8767889 8768017 -115308155 - L1Md_A LINE L1 0 6582 6455 3 651 2790 205 127 38 chr9 8768017 8768752 -115307420 + L1VL4 LINE L1 98 917 -5385 3 651 247 31 0 0 chr9 8768768 8768800 -115307372 - L1_Mus3 LINE L1 -743 5895 5864 3 651 2386 153 44 18 chr9 8768800 8769253 -115306919 + L1_Mus3 LINE L1 6083 6547 -91 3 651 2606 137 11 42 chr9 8769253 8769686 -115306486 - RLTR9B2 LTR ERVK 0 420 1 3 651 381 137 14 14 chr9 8769687 8769761 -115306411 - ETnERV2-int LTR ERVK -2 7404 7331 3 651 670 247 18 0 chr9 8769974 8770140 -115306032 - ETnERV2-int LTR ERVK -981 6425 6257 3 651 427 243 58 22 chr9 8770193 8770332 -115305840 - ETnERV2-int LTR ERVK -1166 6240 6097 3 651 1710 160 69 26 chr9 8770340 8770687 -115305485 - ETnERV2-int LTR ERVK -1230 4176 3815 3 651 11061 19 1 79 chr9 8770687 8772246 -115303926 + L1Md_A LINE L1 4150 5586 -297 3 651 8142 35 12 0 chr9 8772246 8773217 -115302955 + L1Md_A LINE L1 5587 6569 -13 3 651 186 43 0 0 chr9 8773220 8773243 -115302929 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3 651 1743 171 63 29 chr9 8773248 8773663 -115302509 - ETnERV2-int LTR ERVK -1596 3810 3382 3 651 3189 146 33 11 chr9 8773671 8774212 -115301960 + RLTR1D LTR ERV1 37 589 -16 3 651 5378 214 69 59 chr9 8774229 8774302 -115301870 - ETnERV2-int LTR ERVK -2022 3384 3311 3 651 395 38 19 0 chr9 8774302 8774355 -115301817 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 3 651 7690 189 55 55 chr9 8774355 8774784 -115301388 - ETnERV2-int LTR ERVK -3312 4094 3929 3 651 423 0 0 0 chr9 8774784 8774831 -115301341 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 651 270 0 0 0 chr9 8774838 8774868 -115301304 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 651 7690 149 32 48 chr9 8774868 8775930 -115300242 - ETnERV2-int LTR ERVK -3482 3924 2861 3 651 732 23 0 0 chr9 8775930 8776016 -115300156 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 3 651 7690 149 32 48 chr9 8776016 8776027 -115300145 - ETnERV2-int LTR ERVK -4546 2860 2858 3 651 1114 96 0 0 chr9 8776027 8776173 -115299999 + B1_Mm SINE Alu 2 147 0 3 651 7690 167 53 77 chr9 8776173 8776786 -115299386 - ETnERV2-int LTR ERVK -3541 3703 2482 3 651 20971 84 8 0 chr9 8776786 8780284 -115295888 - L1Md_F2 LINE L1 -266 6316 2789 3 651 2855 47 3 3 chr9 8780284 8780629 -115295543 + IAPLTR4 LTR ERVK 1 345 0 3 651 434 235 17 34 chr9 8780629 8780748 -115295424 + IAPLTR3-int LTR ERVK 1 117 -6704 3 651 463 167 8 48 chr9 8780748 8780874 -115295298 + IAPLTR3-int LTR ERVK 834 954 -5867 3 651 336 167 16 95 chr9 8780854 8780980 -115295192 + MMERVK10C-int LTR ERVK 837 952 -6629 3 651 1085 236 106 35 chr9 8781101 8781582 -115294590 + RMER16-int LTR ERVK 256 668 -5469 3 651 442 230 88 0 chr9 8781585 8781698 -115294474 + RMER16-int LTR ERVK 938 1060 -5077 3 651 250 232 0 68 chr9 8781733 8781807 -115294365 + ETnERV3-int LTR ERVK 2471 2539 -4867 3 81 6238 107 32 15 chr9 8781819 8782896 -115293276 + ETnERV3-int LTR ERVK 2735 3829 -1979 3 652 36806 9 0 1 chr9 8782899 8789102 -115287070 + L1Md_A LINE L1 1 5586 -297 3 652 9075 2 0 0 chr9 8789102 8790098 -115286074 + L1Md_A LINE L1 5587 6582 0 3 652 1466 142 284 0 chr9 8790099 8790402 -115285770 + ETnERV3-int LTR ERVK 3883 4271 -3135 3 652 458 178 9 36 chr9 8790407 8790518 -115285654 + MMETn-int LTR ERVK 2357 2464 -2380 3 652 763 85 17 8 chr9 8790544 8790663 -115285509 + ETnERV3-int LTR ERVK 4530 4649 -2932 3 652 5816 241 40 31 chr9 8790813 8793313 -115282859 + ETnERV3-int LTR ERVK 5068 7329 -351 3 652 2811 67 0 0 chr9 8793313 8793658 -115282514 + IAPLTR4 LTR ERVK 1 345 0 3 652 10613 136 42 22 chr9 8793658 8796188 -115279984 - L1Md_F LINE L1 -3089 2794 238 3 652 4316 138 58 61 chr9 8796188 8796451 -115279721 - ETnERV2-int LTR ERVK -5392 2014 1758 3 652 1615 145 12 81 chr9 8796451 8796797 -115279375 - RLTRETN_Mm LTR ERVK 0 322 1 3 652 4316 138 58 61 chr9 8796797 8797497 -115278675 - ETnERV2-int LTR ERVK -5649 1757 1054 3 652 542 41 14 0 chr9 8797497 8797570 -115278602 + (TTTTA)n Simple_repeat Simple_repeat 4 77 0 3 652 2016 135 60 49 chr9 8797876 8798242 -115277930 - RLTR9B2 LTR ERVK -50 370 1 3 652 213 191 56 56 chr9 8798205 8798249 -115277923 + B1_Mus2 SINE Alu 67 110 -37 3 652 443 130 10 0 chr9 8798249 8798349 -115277823 + L1_Mus2 LINE L1 6465 6565 -1 3 652 213 191 56 56 chr9 8798349 8798376 -115277796 + B1_Mus2 SINE Alu 111 137 -10 3 652 279 0 0 0 chr9 8798376 8798407 -115277765 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 652 22191 164 36 8 chr9 8798418 8801749 -115274423 + L1_Mus4 LINE L1 1257 4729 -1154 3 652 198 0 0 0 chr9 8801749 8801771 -115274401 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 652 22191 164 36 8 chr9 8801771 8802895 -115273277 + L1_Mus4 LINE L1 4730 5847 -36 3 652 3362 40 2 0 chr9 8802895 8803290 -115272882 - MTA_Mm LTR MaLR 0 396 1 3 652 22191 120 14 11 chr9 8803290 8804065 -115272107 + L1_Mus4 LINE L1 5848 6629 -7 3 652 6203 142 28 5 chr9 8804060 8805402 -115270770 + Lx LINE L1 5289 6651 -3 3 652 1120 182 174 11 chr9 8805396 8805595 -115270577 + L1_Mur3 LINE L1 4209 4448 -1432 3 652 1060 68 0 0 chr9 8805595 8805728 -115270444 + B1_Mus2 SINE Alu 2 134 -13 3 652 735 12 0 0 chr9 8805729 8805813 -115270359 + (GAA)n Simple_repeat Simple_repeat 1 84 0 3 652 1120 182 174 11 chr9 8805813 8805973 -115270199 + L1_Mur3 LINE L1 4449 4629 -1251 3 652 211 135 27 0 chr9 8806000 8806037 -115270135 + GA-rich Low_complexity Low_complexity 2 39 0 3 652 5084 228 41 67 chr9 8806066 8808197 -115267975 - Lx5 LINE L1 -217 6833 4739 3 652 340 283 95 57 chr9 8808462 8808758 -115267414 + Kanga2_a DNA Tc2 494 800 -88 3 652 480 77 0 0 chr9 8809052 8809117 -115267055 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 3 652 295 312 31 51 chr9 8809133 8809231 -115266941 + B1_Mm SINE Alu 1 96 -51 3 652 333 244 142 32 chr9 8809404 8809594 -115266578 - ORR1C2 LTR MaLR -2 382 172 3 652 1071 209 66 20 chr9 8809594 8809838 -115266334 - ORR1D1 LTR MaLR -115 259 5 3 652 373 292 76 59 chr9 8809851 8810113 -115266059 - MTEb LTR MaLR 0 379 94 3 652 216 0 0 0 chr9 8810155 8810179 -115265993 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 652 506 295 38 8 chr9 8810475 8810608 -115265564 + ID_B1 SINE B4 87 223 -1 3 652 464 272 65 14 chr9 8811209 8811347 -115264825 + B1F1 SINE Alu 2 146 -3 3 652 255 61 0 0 chr9 8811395 8811428 -115264744 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 652 321 320 179 16 chr9 8811681 8811932 -115264240 + L1M4 LINE L1 3138 3429 -2717 3 652 378 332 102 50 chr9 8812252 8812712 -115263460 + L1M4 LINE L1 3951 4434 -1712 3 652 336 275 2 0 chr9 8812801 8812926 -115263246 + L1M4 LINE L1 4551 4676 -1470 3 652 279 367 19 70 chr9 8812992 8813150 -115263022 + B4A SINE B4 12 161 -131 3 652 538 164 0 22 chr9 8813159 8813340 -115262832 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 4 652 225 0 0 0 chr9 8813460 8813485 -115262687 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 652 534 294 13 19 chr9 8814749 8814905 -115261267 + RSINE1 SINE B4 3 157 -8 4 652 3751 164 40 61 chr9 8815142 8816565 -115259607 + Lx2B LINE L1 5711 7000 0 4 652 319 369 121 35 chr9 8816788 8817044 -115259128 + Tigger7 DNA MER2_type 30 307 -2184 4 652 403 256 208 5 chr9 8817060 8817252 -115258920 + Tigger7 DNA MER2_type 2147 2377 -114 4 652 351 0 0 0 chr9 8817374 8817413 -115258759 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 652 387 0 0 0 chr9 8817413 8817455 -115258717 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 652 1060 183 55 18 chr9 8817612 8817829 -115258343 - URR1B DNA MER1_type 0 225 1 4 652 316 289 37 28 chr9 8818000 8818107 -115258065 - B1F SINE Alu -10 139 32 4 652 27 0 0 0 chr9 8818184 8818211 -115257961 + AT_rich Low_complexity Low_complexity 1 27 0 4 652 363 182 94 66 chr9 8821161 8821267 -115254905 - Lx8 LINE L1 -485 6988 6880 4 652 378 271 103 31 chr9 8821307 8821501 -115254671 + Lx8 LINE L1 7265 7472 -1 4 652 24 0 0 0 chr9 8821508 8821532 -115254640 + AT_rich Low_complexity Low_complexity 1 24 0 4 652 655 265 137 29 chr9 8821932 8822239 -115253933 + Lx8 LINE L1 7134 7473 0 4 652 180 0 0 0 chr9 8822263 8822283 -115253889 + (A)n Simple_repeat Simple_repeat 1 20 0 4 652 1842 160 64 17 chr9 8822615 8822955 -115253217 + ORR1A3 LTR MaLR 1 379 0 4 652 414 0 0 0 chr9 8823431 8823477 -115252695 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 652 2008 180 11 0 chr9 8824599 8824954 -115251218 - RLTR15 LTR ERVK 0 359 1 4 652 2872 76 5 3 chr9 8825276 8825657 -115250515 - MTB LTR MaLR 0 400 19 4 652 237 119 48 63 chr9 8826573 8826636 -115249536 - B3A SINE B2 -136 62 1 4 652 426 342 84 62 chr9 8826716 8827024 -115249148 + MLT1A0 LTR MaLR 1 315 -50 4 652 731 242 160 110 chr9 8827715 8828070 -115248102 + MTE2a LTR MaLR 1 357 -2 4 652 198 0 0 0 chr9 8828391 8828413 -115247759 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 652 297 273 71 0 chr9 8828438 8828537 -115247635 + MIRc SINE MIR 101 206 -62 4 652 219 368 0 0 chr9 8829496 8829572 -115246600 - MIRb SINE MIR -182 86 11 4 652 223 297 0 10 chr9 8829689 8829791 -115246381 + (TA)n Simple_repeat Simple_repeat 2 102 0 4 652 21 82 0 0 chr9 8829806 8829855 -115246317 + AT_rich Low_complexity Low_complexity 1 49 0 4 652 210 71 0 0 chr9 8829856 8829884 -115246288 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 652 207 351 21 21 chr9 8830213 8830309 -115245863 - L2 LINE L2 -937 2482 2387 4 652 64 26 0 0 chr9 8832621 8832699 -115243473 + AT_rich Low_complexity Low_complexity 1 78 0 4 652 207 0 0 0 chr9 8833938 8833961 -115242211 + (A)n Simple_repeat Simple_repeat 1 23 0 4 652 26 0 0 0 chr9 8834047 8834073 -115242099 + AT_rich Low_complexity Low_complexity 1 26 0 4 652 46 19 0 0 chr9 8834701 8834754 -115241418 + AT_rich Low_complexity Low_complexity 1 53 0 4 652 23 54 0 0 chr9 8834800 8834837 -115241335 + AT_rich Low_complexity Low_complexity 1 37 0 4 652 564 250 15 7 chr9 8834838 8835019 -115241153 - Lx7 LINE L1 -4 7692 7542 4 652 25 0 0 0 chr9 8835486 8835511 -115240661 + AT_rich Low_complexity Low_complexity 1 25 0 4 652 1187 270 48 67 chr9 8835554 8835911 -115240261 + ORR1E LTR MaLR 1 350 -9 4 652 361 46 77 0 chr9 8836075 8836140 -115240032 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 4 652 216 0 0 0 chr9 8836901 8836925 -115239247 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 652 529 299 33 124 chr9 8837279 8837448 -115238724 + B3A SINE B2 2 156 -42 4 652 360 0 0 0 chr9 8837448 8837488 -115238684 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 652 401 299 33 124 chr9 8837488 8837528 -115238644 + B2_Mm2 SINE B2 149 192 -3 4 652 421 304 92 20 chr9 8838170 8838365 -115237807 + ID_B1 SINE B4 1 209 -15 4 652 245 321 0 0 chr9 8838548 8838629 -115237543 + Lx9 LINE L1 6582 6662 -982 4 652 275 221 67 34 chr9 8838639 8838728 -115237444 - Lx6 LINE L1 -98 7362 7271 4 652 510 280 132 73 chr9 8838731 8839086 -115237086 + Lx9 LINE L1 6675 7050 -594 4 652 253 200 40 0 chr9 8839244 8839319 -115236853 - Lx6 LINE L1 -158 7302 7225 4 652 913 214 209 8 chr9 8839359 8839622 -115236550 - Lx6 LINE L1 -388 7072 6757 4 652 291 203 0 0 chr9 8839625 8839699 -115236473 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 652 3559 184 51 4 chr9 8839743 8840608 -115235564 - Lx6 LINE L1 -1445 6015 5115 4 652 332 358 39 29 chr9 8840779 8840986 -115235186 - LTR52 LTR ERVL -7 414 206 4 652 958 298 89 11 chr9 8841103 8841561 -115234611 + LTR52-int LTR ERVL 124 617 -2939 4 652 749 158 0 13 chr9 8841741 8841895 -115234277 + GA-rich Low_complexity Low_complexity 1 152 0 4 652 265 246 0 16 chr9 8842055 8842117 -115234055 + CT-rich Low_complexity Low_complexity 4 64 0 4 652 2556 207 24 27 chr9 8842120 8842746 -115233426 + Lx4B LINE L1 6431 7054 -4 4 652 21 0 0 0 chr9 8842746 8842767 -115233405 + AT_rich Low_complexity Low_complexity 1 21 0 4 652 26 0 0 0 chr9 8842978 8843004 -115233168 + AT_rich Low_complexity Low_complexity 1 26 0 4 652 5669 104 10 25 chr9 8843007 8843850 -115232322 - Lx3_Mus LINE L1 -21 6988 6159 4 652 2471 148 0 20 chr9 8843850 8844257 -115231915 - L1_Mus4 LINE L1 -3 6633 6235 4 652 5669 104 10 25 chr9 8844257 8844314 -115231858 - Lx3_Mus LINE L1 -851 6158 6102 4 652 7170 106 11 2 chr9 8844494 8846020 -115230152 - L1_Mus3 LINE L1 0 6638 5099 4 652 6913 74 21 1 chr9 8846022 8847208 -115228964 - L1_Mus1 LINE L1 0 6567 5357 4 652 20589 119 11 2 chr9 8847193 8848971 -115227201 - L1_Mus1 LINE L1 -1218 4665 2885 4 652 1109 110 0 6 chr9 8848971 8849144 -115227028 + (TTTC)n Simple_repeat Simple_repeat 3 174 0 4 652 20589 132 10 38 chr9 8849144 8851365 -115224807 - L1_Mus1 LINE L1 -2999 2884 725 4 652 453 236 16 8 chr9 8851373 8851501 -115224671 - L1_Mus1 LINE L1 -5813 803 675 4 652 351 271 8 96 chr9 8851559 8851807 -115224365 - L1VL1 LINE L1 -6037 385 45 4 652 5002 107 51 1 chr9 8851819 8852636 -115223536 - L1_Mm LINE L1 -765 5118 4261 4 652 324 336 68 71 chr9 8852636 8852902 -115223270 - B4A SINE B4 -27 265 1 4 652 312 295 133 37 chr9 8853961 8854179 -115221993 - Lx8 LINE L1 -2 7471 7233 4 652 285 258 16 0 chr9 8854931 8854993 -115221179 + Lx8 LINE L1 6557 6619 -854 4 652 233 341 21 104 chr9 8855994 8856138 -115220034 - MLT1G3 LTR MaLR -181 414 283 4 652 242 182 0 0 chr9 8856174 8856218 -115219954 + MTE2a LTR MaLR 5 48 -331 4 652 636 312 25 36 chr9 8856222 8856418 -115219754 + B3A SINE B2 5 198 0 4 652 692 306 25 65 chr9 8856460 8856705 -115219467 + MTE2a LTR MaLR 61 295 -84 4 652 432 255 85 0 chr9 8857045 8857151 -115219021 - ID_B1 SINE B4 -10 214 100 4 652 369 0 0 0 chr9 8858341 8858382 -115217790 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 652 303 28 0 0 chr9 8858769 8858805 -115217367 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 652 796 303 20 25 chr9 8858875 8859075 -115217097 + B3 SINE B2 2 200 -16 4 652 31590 69 11 16 chr9 8859668 8864764 -115211408 + L1Md_F2 LINE L1 518 5586 -297 4 652 8100 48 1 0 chr9 8864765 8865747 -115210425 + L1Md_F2 LINE L1 5588 6570 -12 4 652 22 56 0 0 chr9 8865814 8865850 -115210322 + AT_rich Low_complexity Low_complexity 1 36 0 4 652 946 218 15 0 chr9 8865981 8866183 -115209989 + Lx5 LINE L1 6529 6733 -317 4 652 540 0 0 0 chr9 8866321 8866381 -115209791 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 652 246 345 36 0 chr9 8866701 8866811 -115209361 + ID_B1 SINE B4 8 121 -103 4 652 267 31 0 0 chr9 8869281 8869313 -115206859 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 652 420 308 10 0 chr9 8870662 8870766 -115205406 + RSINE1 SINE B4 45 149 -16 4 652 601 208 89 11 chr9 8871053 8871233 -115204939 - L1MA8 LINE L1 -51 6240 6047 4 652 406 223 15 21 chr9 8871273 8871377 -115204795 - B1_Mus2 SINE Alu 0 147 19 4 652 34 24 0 0 chr9 8871472 8871513 -115204659 + AT_rich Low_complexity Low_complexity 1 41 0 4 652 1645 246 11 27 chr9 8872260 8872632 -115203540 + MTE2b LTR MaLR 3 368 -11 4 652 253 346 7 86 chr9 8872783 8872922 -115203250 - Tigger7 DNA MER2_type -10 2481 2354 4 652 699 327 128 45 chr9 8872904 8873163 -115203009 - Tigger7 DNA MER2_type -2014 477 187 4 652 837 56 0 0 chr9 8873163 8873270 -115202902 + (GGAGA)n Simple_repeat Simple_repeat 5 111 0 4 652 699 327 128 45 chr9 8873270 8873433 -115202739 - Tigger7 DNA MER2_type -2305 186 20 4 652 5424 130 29 1 chr9 8873786 8874672 -115201500 + Lx3C LINE L1 5908 6818 -158 4 652 559 306 54 0 chr9 8874673 8874820 -115201352 + RSINE1 SINE B4 11 165 0 4 652 905 233 24 28 chr9 8874947 8875159 -115201013 + B3 SINE B2 1 211 -5 4 652 183 42 0 0 chr9 8875637 8875661 -115200511 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 652 379 281 132 0 chr9 8875667 8875781 -115200391 - MTE2a LTR MaLR -56 323 195 4 652 225 323 0 0 chr9 8875825 8875887 -115200285 - MTE2a LTR MaLR -317 62 1 4 652 1251 238 69 79 chr9 8876033 8876499 -115199673 - RMER6B LTR ERVK 0 461 1 4 652 18563 108 3 1 chr9 8877282 8880959 -115195213 - L1_Mus2 LINE L1 0 6566 2878 4 652 1725 76 0 0 chr9 8880963 8881188 -115194984 - L1_Mus1 LINE L1 0 6567 6343 4 652 23643 115 25 3 chr9 8881188 8882718 -115193454 - L1Md_F LINE L1 -721 5162 3555 4 652 2180 120 66 71 chr9 8882718 8883112 -115193060 - RLTR9C LTR ERVK 0 393 2 4 652 23643 128 36 4 chr9 8883112 8886096 -115190076 - L1Md_F LINE L1 -2329 3554 516 4 652 482 285 110 1 chr9 8886100 8886323 -115189849 - Lx4B LINE L1 -17 7041 6757 4 652 326 306 93 93 chr9 8886735 8886897 -115189275 + RSINE1 SINE B4 4 165 0 4 652 219 204 0 0 chr9 8886897 8886951 -115189221 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 652 447 35 0 0 chr9 8887890 8887947 -115188225 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 652 24 53 0 0 chr9 8888049 8888087 -115188085 + AT_rich Low_complexity Low_complexity 1 38 0 4 652 3673 58 22 14 chr9 8888111 8888209 -115187963 + LTRIS2 LTR ERV1 69 165 -399 4 652 1567 37 11 11 chr9 8888209 8888400 -115187772 + B2_Mm1a SINE B2 2 192 -1 4 652 3673 58 22 14 chr9 8888400 8888793 -115187379 + LTRIS2 LTR ERV1 166 564 0 4 652 972 100 162 0 chr9 8889437 8889597 -115186575 - B2_Mm2 SINE B2 -9 186 1 5 652 243 179 0 0 chr9 8889650 8889706 -115186466 - L1M2 LINE L1 -1126 5017 4962 5 652 307 260 31 0 chr9 8889943 8890039 -115186133 - L1M2c LINE L1 -4257 2592 2494 5 652 225 0 0 0 chr9 8890170 8890195 -115185977 + (T)n Simple_repeat Simple_repeat 1 25 0 5 652 667 331 69 26 chr9 8890442 8891091 -115185081 - L1M2c LINE L1 -4696 2153 1477 5 652 310 352 132 66 chr9 8892159 8892402 -115183770 + MLT1J1 LTR MaLR 15 273 -175 5 652 6005 172 94 5 chr9 8893201 8894428 -115181744 - Lx5 LINE L1 -1 7049 5713 5 652 675 67 0 0 chr9 8894635 8894724 -115181448 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 652 630 253 302 19 chr9 8895324 8895638 -115180534 - MTD LTR MaLR -16 403 1 5 652 279 262 213 38 chr9 8895935 8896249 -115179923 - Lx8 LINE L1 -7 7466 7098 5 652 326 282 86 23 chr9 8896292 8896513 -115179659 + L1MD LINE L1 5354 5588 -2407 5 652 381 326 82 52 chr9 8896553 8896747 -115179425 - MLT1A LTR MaLR -7 367 168 5 652 249 301 127 9 chr9 8896855 8897076 -115179096 + L1M5 LINE L1 5616 5862 -317 5 652 22 35 0 0 chr9 8897142 8897171 -115179001 + AT_rich Low_complexity Low_complexity 1 29 0 5 652 317 309 78 6 chr9 8897755 8897934 -115178238 + L1MC3 LINE L1 7436 7627 -158 5 652 365 366 27 27 chr9 8899190 8899336 -115176836 + RSINE1 SINE B4 20 165 0 5 652 511 255 71 77 chr9 8899335 8899505 -115176667 + B3A SINE B2 28 196 -2 5 652 231 292 0 0 chr9 8900363 8900428 -115175744 + C-rich Low_complexity Low_complexity 2 66 0 5 652 450 0 0 0 chr9 8902419 8902469 -115173703 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 652 289 125 15 30 chr9 8903166 8903232 -115172940 + (TATG)n Simple_repeat Simple_repeat 4 68 0 5 652 712 299 45 32 chr9 8903243 8903464 -115172708 + ID_B1 SINE B4 1 224 0 5 652 281 89 0 22 chr9 8904160 8904206 -115171966 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 652 1162 76 0 0 chr9 8904445 8904590 -115171582 - B1_Mus2 SINE Alu -2 145 1 5 652 221 286 56 6 chr9 8905348 8905510 -115170662 + (TAGA)n Simple_repeat Simple_repeat 1 170 0 5 652 281 280 27 0 chr9 8905959 8906034 -115170138 - MIR SINE MIR -178 84 8 5 652 305 385 6 6 chr9 8907971 8908125 -115168047 + (TG)n Simple_repeat Simple_repeat 1 154 0 5 652 1741 188 47 11 chr9 8908125 8908490 -115167682 - ORR1C1 LTR MaLR 0 378 1 5 652 330 322 11 44 chr9 8908490 8908636 -115167536 + (TATATG)n Simple_repeat Simple_repeat 3 142 0 5 652 276 359 8 0 chr9 8909052 8909183 -115166989 + (CATATA)n Simple_repeat Simple_repeat 4 135 0 5 652 192 97 0 0 chr9 8909695 8909726 -115166446 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 652 404 287 21 0 chr9 8910013 8910107 -115166065 + PB1D10 SINE Alu 9 104 -13 5 652 185 367 51 0 chr9 8911018 8911116 -115165056 - MIRb SINE MIR -68 200 98 5 652 333 328 182 30 chr9 8911771 8912233 -115163939 + Charlie7 DNA MER1_type 1431 1962 -650 5 652 204 294 19 34 chr9 8912269 8912356 -115163816 - L2a LINE L2 -19 3407 3272 5 652 403 170 10 10 chr9 8912568 8912669 -115163503 + CT-rich Low_complexity Low_complexity 2 102 0 5 81 306 340 61 54 chr9 8912767 8913044 -115163128 + L2 LINE L2 2621 2899 -520 5 653 609 49 0 0 chr9 8913144 8913225 -115162947 + (TTTTG)n Simple_repeat Simple_repeat 4 84 0 5 653 1027 67 0 43 chr9 8913225 8913366 -115162806 - B1_Mus1 SINE Alu -12 136 2 5 653 207 205 0 0 chr9 8914239 8914278 -115161894 + MIRm SINE MIR 235 273 -3 5 653 261 293 60 24 chr9 8914357 8914441 -115161731 - MIR SINE MIR -118 144 58 5 653 318 194 83 0 chr9 8914520 8914592 -115161580 - Charlie1a DNA MER1_type -49 1406 1329 5 653 302 272 105 32 chr9 8914599 8914694 -115161478 + B3A SINE B2 1 102 -96 5 653 798 249 44 58 chr9 8914716 8914765 -115161407 - B3A SINE B2 -14 202 151 5 653 426 20 0 0 chr9 8914765 8914816 -115161356 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 653 297 109 0 0 chr9 8914816 8914861 -115161311 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 653 798 260 5 16 chr9 8914861 8915015 -115161157 - B3A SINE B2 -44 154 2 5 653 728 241 81 31 chr9 8915251 8915474 -115160698 - Charlie1a DNA MER1_type -243 1212 979 5 653 320 287 63 102 chr9 8915774 8916148 -115160024 - MLT1A1 LTR MaLR 0 408 1 5 653 272 381 86 35 chr9 8916412 8916586 -115159586 - MER20 DNA MER1_type -26 193 11 5 653 300 253 12 12 chr9 8916719 8916799 -115159373 - MTEb LTR MaLR -22 357 278 5 653 384 288 6 67 chr9 8917282 8917461 -115158711 - Lx7 LINE L1 -298 7398 7231 5 653 1206 68 0 0 chr9 8917741 8917888 -115158284 - B1_Mus2 SINE Alu 0 147 1 5 653 618 325 31 0 chr9 8918023 8918183 -115157989 + B3A SINE B2 4 168 -30 5 653 303 16 14 72 chr9 8918215 8918284 -115157888 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 5 653 25 51 0 0 chr9 8918451 8918490 -115157682 + AT_rich Low_complexity Low_complexity 1 39 0 5 653 576 95 0 0 chr9 8918549 8918633 -115157539 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 653 4233 194 45 12 chr9 8918682 8919593 -115156579 - Lx6 LINE L1 -460 7000 6060 5 653 414 217 104 0 chr9 8919611 8919717 -115156455 + Lx6 LINE L1 7168 7284 -176 5 653 342 0 0 0 chr9 8919729 8919767 -115156405 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 5 653 240 333 18 9 chr9 8919806 8919915 -115156257 + Lx7 LINE L1 7189 7298 -398 5 653 23 78 0 0 chr9 8920116 8920167 -115156005 + AT_rich Low_complexity Low_complexity 1 51 0 5 653 630 233 0 0 chr9 8920353 8920533 -115155639 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 653 530 273 14 34 chr9 8921099 8921247 -115154925 + B4 SINE B4 86 230 -62 5 653 474 18 0 0 chr9 8921274 8921329 -115154843 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 653 255 93 0 0 chr9 8922796 8922839 -115153333 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 5 653 2702 204 29 50 chr9 8922839 8923455 -115152717 - Lx5 LINE L1 -13 7037 6435 5 653 5002 190 78 6 chr9 8923451 8924993 -115151179 - Lx5 LINE L1 -879 6171 4488 5 653 7960 126 7 6 chr9 8925065 8926273 -115149899 - Lx2 LINE L1 -6 6991 5783 5 653 496 350 20 27 chr9 8926743 8926890 -115149282 + RSINE1 SINE B4 2 147 -18 5 653 482 322 90 27 chr9 8926937 8927125 -115149047 + B4 SINE B4 25 224 -68 5 653 438 101 0 0 chr9 8927157 8927226 -115148946 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 653 636 50 0 0 chr9 8928235 8928315 -115147857 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 653 371 21 0 20 chr9 8930262 8930311 -115145861 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 5 653 1718 219 134 30 chr9 8930386 8930997 -115145175 - Lx9 LINE L1 -147 7497 6823 5 653 21900 137 68 20 chr9 8931253 8937233 -115138939 + L1_Mus3 LINE L1 359 6638 0 5 653 189 213 0 0 chr9 8937499 8937546 -115138626 + CT-rich Low_complexity Low_complexity 1 47 0 5 653 503 31 0 15 chr9 8938006 8938072 -115138100 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 653 848 37 9 0 chr9 8938481 8938589 -115137583 + (GAA)n Simple_repeat Simple_repeat 1 109 0 5 653 22 0 0 0 chr9 8939822 8939844 -115136328 + AT_rich Low_complexity Low_complexity 1 22 0 5 653 507 287 94 65 chr9 8939895 8940096 -115136076 - B4A SINE B4 0 292 86 5 653 3273 87 11 32 chr9 8940424 8940897 -115135275 - Lx3_Mus LINE L1 -3 7006 6544 5 653 448 109 0 0 chr9 8940898 8940962 -115135210 + 4.5SRNA scRNA scRNA 17 80 -14 5 653 274 220 41 62 chr9 8940920 8941017 -115135155 + B1F1 SINE Alu 41 135 -14 5 653 342 397 67 18 chr9 8941022 8941245 -115134927 - L1MEd LINE L1 -5396 723 490 5 653 381 93 0 0 chr9 8941908 8941962 -115134210 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 653 319 274 42 111 chr9 8942624 8942768 -115133404 + B4A SINE B4 5 138 -154 5 653 225 94 0 0 chr9 8942918 8942950 -115133222 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 653 537 163 22 0 chr9 8943009 8943144 -115133028 + (CA)n Simple_repeat Simple_repeat 1 138 0 5 653 216 0 0 0 chr9 8944184 8944208 -115131964 + (T)n Simple_repeat Simple_repeat 1 24 0 5 653 971 283 135 18 chr9 8945713 8946140 -115130032 - RMER15 LTR ERVL 0 575 2 5 653 241 279 29 0 chr9 8946157 8946225 -115129947 + RMER30 DNA MER1_type 133 202 0 5 653 444 123 10 3 chr9 8946282 8946355 -115129817 - L1_Mus2 LINE L1 -625 5957 5880 5 653 1362 65 0 0 chr9 8946345 8946514 -115129658 + L1_Mus1 LINE L1 6270 6438 -129 5 653 214 324 14 0 chr9 8947093 8947164 -115129008 + ID SINE ID 6 77 -147 5 653 1201 293 54 0 chr9 8948763 8949115 -115127057 - MTEa LTR MaLR -8 371 1 5 653 285 250 20 61 chr9 8951922 8952020 -115124152 + PB1D10 SINE Alu 23 116 -1 5 653 516 314 116 12 chr9 8953354 8953612 -115122560 - B4A SINE B4 -3 289 5 5 653 332 319 60 8 chr9 8953770 8953887 -115122285 - B1_Mur4 SINE Alu -1 149 27 5 653 450 306 9 9 chr9 8953804 8953916 -115122256 - ID_B1 SINE B4 -35 189 78 5 653 1095 261 75 17 chr9 8955601 8955948 -115120224 - Lx8 LINE L1 -60 7413 7047 5 653 462 295 127 103 chr9 8956458 8957080 -115119092 - L1_Rod LINE L1 -583 5720 5025 5 653 236 266 109 50 chr9 8957524 8957643 -115118529 - MIRc SINE MIR -32 236 111 5 653 485 314 32 8 chr9 8960438 8960563 -115115609 + ID_B1 SINE B4 80 207 -17 5 653 311 171 0 28 chr9 8960570 8960642 -115115530 + GA-rich Low_complexity Low_complexity 4 73 0 5 653 837 0 0 0 chr9 8960642 8960735 -115115437 + (GGAGA)n Simple_repeat Simple_repeat 1 93 0 5 653 2115 176 3 0 chr9 8961603 8961962 -115114210 - ORR1B1 LTR MaLR 0 394 35 6 653 630 308 35 30 chr9 8961986 8962187 -115113985 - MTE2a LTR MaLR -177 202 1 6 653 3050 56 5 8 chr9 8962563 8962960 -115113212 - MTA_Mm LTR MaLR 0 396 1 6 653 270 0 0 0 chr9 8962962 8962992 -115113180 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 653 462 288 133 4 chr9 8963456 8963697 -115112475 + HAL1 LINE L1 1452 1723 -784 6 653 240 35 0 0 chr9 8963927 8963956 -115112216 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6 653 216 311 26 26 chr9 8964221 8964297 -115111875 + B1F SINE Alu 69 144 -5 6 653 677 244 24 68 chr9 8964585 8964792 -115111380 + B3 SINE B2 1 198 -18 6 653 195 0 27 54 chr9 8965642 8965679 -115110493 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 653 21 0 0 0 chr9 8966369 8966390 -115109782 + AT_rich Low_complexity Low_complexity 1 21 0 6 653 29 28 0 0 chr9 8967626 8967662 -115108510 + AT_rich Low_complexity Low_complexity 1 36 0 6 653 30 0 0 0 chr9 8967741 8967771 -115108401 + AT_rich Low_complexity Low_complexity 1 30 0 6 653 21 0 0 0 chr9 8968404 8968425 -115107747 + AT_rich Low_complexity Low_complexity 1 21 0 6 653 304 337 30 0 chr9 8970095 8970196 -115105976 + PB1D10 SINE Alu 2 105 -12 6 653 207 0 0 0 chr9 8971964 8971987 -115104185 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 653 450 105 53 0 chr9 8972202 8972316 -115103856 + (TGG)n Simple_repeat Simple_repeat 1 120 0 6 653 599 209 88 15 chr9 8974124 8974260 -115101912 - B1_Mur2 SINE Alu -1 148 3 6 653 399 41 0 0 chr9 8975545 8975594 -115100578 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 653 233 320 37 46 chr9 8976193 8976301 -115099871 + PB1D10 SINE Alu 10 116 -1 6 653 192 200 0 0 chr9 8976301 8976341 -115099831 + A-rich Low_complexity Low_complexity 1 40 0 6 653 498 324 0 0 chr9 8977782 8977918 -115098254 + B1F2 SINE Alu 1 136 -13 6 653 1385 61 0 0 chr9 8979598 8979779 -115096393 + L1_Mus2 LINE L1 6386 6566 0 6 653 26 30 0 0 chr9 8979953 8979986 -115096186 + AT_rich Low_complexity Low_complexity 1 33 0 6 653 21 0 0 0 chr9 8980121 8980142 -115096030 + AT_rich Low_complexity Low_complexity 1 21 0 6 653 388 226 42 127 chr9 8980683 8980825 -115095347 + B1F SINE Alu 20 149 0 6 653 683 316 148 27 chr9 8981601 8982128 -115094044 - MER21B LTR ERV1 -112 751 161 6 653 456 19 0 0 chr9 8982138 8982191 -115093981 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 653 636 81 0 0 chr9 8982191 8982277 -115093895 + (TA)n Simple_repeat Simple_repeat 1 87 0 6 653 1722 254 100 10 chr9 8982278 8982787 -115093385 - Lx8 LINE L1 -717 6756 6202 6 653 264 261 110 63 chr9 8983355 8983482 -115092690 - B1F SINE Alu -16 133 1 6 653 375 320 41 73 chr9 8984896 8985115 -115091057 - MLT1J LTR MaLR -202 310 99 6 653 414 0 0 0 chr9 8985999 8986045 -115090127 + (T)n Simple_repeat Simple_repeat 1 46 0 6 653 283 322 9 9 chr9 8986174 8986290 -115089882 + (TG)n Simple_repeat Simple_repeat 1 116 0 6 653 2239 258 67 120 chr9 8986638 8986752 -115089420 - L1_Mus4 LINE L1 -1 6999 6883 6 653 204 40 0 0 chr9 8986752 8986777 -115089395 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 6 653 6901 141 34 32 chr9 8986777 8988212 -115087960 - L1_Mus4 LINE L1 -118 6882 5529 6 653 3168 73 2 0 chr9 8988260 8988668 -115087504 - L1_Mus1 LINE L1 0 6567 6159 6 653 13741 156 10 2 chr9 8988668 8991088 -115085084 - L1_Mus4 LINE L1 -1088 4798 2357 6 653 4211 121 17 5 chr9 8991114 8991746 -115084426 - L1VL4 LINE L1 -5490 812 173 6 653 21 0 0 0 chr9 8992075 8992096 -115084076 + AT_rich Low_complexity Low_complexity 1 21 0 6 653 486 0 0 0 chr9 8994487 8994541 -115081631 + (CACAT)n Simple_repeat Simple_repeat 1 54 0 6 653 750 270 50 5 chr9 8996279 8996480 -115079692 + B3 SINE B2 1 210 -6 6 653 250 224 62 50 chr9 8997898 8997978 -115078194 - B1F SINE Alu -35 114 34 6 653 424 229 95 27 chr9 8998315 8998463 -115077709 - Lx5 LINE L1 -3 7047 6890 6 653 1306 79 17 6 chr9 8998499 8998677 -115077495 - B2_Mm2 SINE B2 -14 181 2 6 653 626 236 7 7 chr9 8998898 8999039 -115077133 + B1_Mur4 SINE Alu 2 142 -8 6 653 207 0 0 0 chr9 9000217 9000240 -115075932 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 653 744 265 100 24 chr9 9000999 9001289 -115074883 + MER2 DNA MER2_type 9 320 -25 2 653 1071 128 139 35 chr9 9001395 9001597 -115074575 - URR1A DNA MER1_type -3 223 1 3 653 483 96 0 0 chr9 9002594 9002677 -115073495 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 653 811 236 34 15 chr9 9003180 9003386 -115072786 - ID_B1 SINE B4 -11 213 4 5 653 670 216 7 7 chr9 9004437 9004572 -115071600 - RSINE1 SINE B4 -29 136 2 6 653 238 402 39 0 chr9 9008804 9008906 -115067266 - PB1D10 SINE Alu -8 109 4 7 653 430 264 47 27 chr9 9009888 9010036 -115066136 + RSINE1 SINE B4 2 152 -13 8 653 627 215 17 0 chr9 9010557 9010734 -115065438 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 9 653 230 111 76 22 chr9 9010746 9010838 -115065334 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 9 653 419 282 26 141 chr9 9010987 9011300 -115064872 - Charlie2b DNA MER1_type 0 2782 2506 1 653 937 52 36 36 chr9 9011487 9011626 -115064546 + B1_Mm SINE Alu 9 147 0 1 653 237 24 71 0 chr9 9011626 9011668 -115064504 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 653 2150 186 3 0 chr9 9012095 9012440 -115063732 + ORR1B2 LTR MaLR 1 346 -21 1 653 295 141 27 27 chr9 9012726 9012799 -115063373 + GA-rich Low_complexity Low_complexity 4 76 0 1 653 183 403 47 61 chr9 9013217 9013365 -115062807 + MIRc SINE MIR 51 196 -72 1 653 4056 93 14 2 chr9 9014001 9014560 -115061612 - L1_Mus4 LINE L1 0 6636 6071 1 653 788 290 15 20 chr9 9014609 9014806 -115061366 + B3A SINE B2 3 198 0 1 653 810 164 14 35 chr9 9014828 9014973 -115061199 + B1_Mur4 SINE Alu 1 142 -8 1 653 854 286 14 0 chr9 9015611 9015828 -115060344 + ID_B1 SINE B4 5 224 0 1 653 488 272 37 58 chr9 9016499 9016690 -115059482 - MIR SINE MIR -37 225 39 2 653 730 254 13 53 chr9 9017800 9018025 -115058147 + B3 SINE B2 1 216 0 2 653 538 295 6 75 chr9 9018827 9018988 -115057184 + RSINE1 SINE B4 3 152 -13 2 653 3871 128 26 2 chr9 9019850 9020470 -115055702 + L1VL4 LINE L1 190 824 -5478 2 653 18080 165 25 4 chr9 9020472 9024674 -115051498 + Lx LINE L1 2357 6651 -3 2 653 297 263 19 46 chr9 9024717 9024832 -115051340 + PB1D10 SINE Alu 6 116 -1 2 653 369 343 18 159 chr9 9024962 9025302 -115050870 + B4 SINE B4 1 292 0 2 653 288 0 0 0 chr9 9025314 9025346 -115050826 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 653 327 65 0 0 chr9 9025766 9025812 -115050360 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 653 245 327 8 113 chr9 9026209 9026333 -115049839 + MLT1I LTR MaLR 286 396 -15 2 653 293 291 160 86 chr9 9026817 9027073 -115049099 + B4 SINE B4 2 276 -16 3 653 204 67 0 0 chr9 9028323 9028353 -115047819 + (C)n Simple_repeat Simple_repeat 1 30 0 3 653 562 307 0 6 chr9 9031118 9031298 -115044874 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 653 433 267 41 16 chr9 9031589 9031711 -115044461 + B1F SINE Alu 18 142 -7 3 653 1119 66 0 0 chr9 9031918 9032055 -115044117 + B1_Mus2 SINE Alu 1 137 -10 3 653 233 0 62 0 chr9 9032055 9032087 -115044085 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 653 269 366 34 43 chr9 9032218 9032335 -115043837 - PB1D10 SINE Alu 0 117 2 3 653 239 248 77 126 chr9 9032398 9032541 -115043631 - MIRb SINE MIR -28 240 105 3 653 832 250 98 0 chr9 9032699 9032943 -115043229 + Lx6 LINE L1 7189 7456 -4 3 653 866 228 92 0 chr9 9033180 9033386 -115042786 - URR1B DNA MER1_type 0 225 1 3 653 233 320 61 10 chr9 9034569 9034667 -115041505 + MIR3 SINE MIR 91 193 -15 4 653 345 102 0 0 chr9 9034701 9034760 -115041412 + (TTAGGG)n Simple_repeat Simple_repeat 5 63 0 4 653 562 106 19 9 chr9 9034797 9034902 -115041270 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 4 653 428 323 46 8 chr9 9035920 9036051 -115040121 - ID_B1 SINE B4 -7 217 82 4 653 409 285 70 35 chr9 9036251 9036393 -115039779 + ID_B1 SINE B4 72 218 -6 4 653 2138 197 56 9 chr9 9036422 9036872 -115039300 + Lx5 LINE L1 6577 7047 -3 4 653 267 247 112 12 chr9 9038073 9038233 -115037939 - Lx7 LINE L1 -5 7691 7516 4 653 4381 89 2 0 chr9 9038320 9038938 -115037234 + L1_Mm LINE L1 5190 5808 -75 4 653 720 192 79 18 chr9 9038938 9039102 -115037070 + RLTR11B LTR ERVK 280 453 0 4 653 5352 70 3 22 chr9 9039126 9039846 -115036326 + L1_Mus1 LINE L1 5862 6567 0 4 653 27 0 0 0 chr9 9039846 9039873 -115036299 + AT_rich Low_complexity Low_complexity 1 27 0 5 653 3810 224 79 14 chr9 9039917 9040916 -115035256 - Lx7 LINE L1 -365 7331 6268 4 653 3193 150 149 37 chr9 9041420 9042204 -115033968 + RMER17C-int LTR ERVK 1488 2359 -879 5 653 1171 120 84 24 chr9 9042192 9042405 -115033767 + RMER17C-int LTR ERVK 2532 2757 -481 5 653 280 0 50 0 chr9 9042423 9042463 -115033709 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 653 1909 151 6 20 chr9 9042463 9042807 -115033365 + RMER17C-int LTR ERVK 2900 3238 0 5 653 1167 149 238 32 chr9 9042807 9042970 -115033202 + RMER17C LTR ERVK 1 179 -231 5 653 738 38 9 19 chr9 9042970 9043078 -115033094 + (TCTCC)n Simple_repeat Simple_repeat 1 107 0 5 653 1167 149 238 32 chr9 9043078 9043254 -115032918 + RMER17C LTR ERVK 180 409 -1 5 653 2581 119 53 9 chr9 9043488 9043920 -115032252 + RLTR11B LTR ERVK 3 453 0 5 654 1123 268 75 12 chr9 9044411 9044744 -115031428 + MTD LTR MaLR 10 363 -56 5 654 243 158 35 0 chr9 9044746 9044803 -115031369 + A-rich Low_complexity Low_complexity 1 59 0 5 654 567 224 118 33 chr9 9045560 9045712 -115030460 + RSINE1 SINE B4 1 165 0 5 654 283 358 63 0 chr9 9045738 9045833 -115030339 + B4A SINE B4 1 101 -191 5 654 690 173 47 0 chr9 9045876 9046003 -115030169 + MT2A LTR ERVL 1 133 -400 5 654 517 291 133 61 chr9 9045997 9046260 -115029912 + MT2A LTR ERVL 320 601 0 5 654 225 304 37 64 chr9 9046260 9046352 -115029820 + B4 SINE B4 160 248 -44 5 654 486 245 49 6 chr9 9048416 9048580 -115027592 - L1MA9 LINE L1 -63 6249 6079 6 654 226 281 0 34 chr9 9049450 9049509 -115026663 + 4.5SRNA scRNA scRNA 30 86 -8 6 654 649 97 10 4 chr9 9049460 9049567 -115026605 + B1_Mm SINE Alu 40 149 0 6 654 264 91 0 0 chr9 9049570 9049614 -115026558 + (A)n Simple_repeat Simple_repeat 1 44 0 6 654 1005 255 5 9 chr9 9051011 9051221 -115024951 + B3 SINE B2 8 216 0 6 654 351 0 0 0 chr9 9051512 9051551 -115024621 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 654 353 295 161 16 chr9 9051658 9051782 -115024390 - RSINE1 SINE B4 0 165 24 6 654 234 0 0 0 chr9 9051987 9052013 -115024159 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 654 252 296 128 9 chr9 9052279 9052388 -115023784 - ORR1E LTR MaLR -223 136 15 6 654 612 283 89 23 chr9 9052405 9052799 -115023373 + L1M4 LINE L1 4154 4573 -1573 6 654 524 291 35 53 chr9 9053029 9053242 -115022930 + ORR1E LTR MaLR 42 254 -130 7 654 396 0 0 0 chr9 9053482 9053526 -115022646 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 654 677 189 20 121 chr9 9053990 9054189 -115021983 + B3A SINE B2 4 182 -16 7 654 13312 100 64 7 chr9 9055365 9058155 -115018017 - L1VL2 LINE L1 -627 2988 22 7 654 480 281 11 116 chr9 9058425 9058614 -115017558 - MTEa LTR MaLR -210 169 1 7 654 479 240 163 30 chr9 9058712 9058914 -115017258 - L1MC2 LINE L1 -85 6259 6031 7 654 229 346 0 0 chr9 9060102 9060180 -115015992 + GA-rich Low_complexity Low_complexity 4 81 0 7 654 344 309 72 14 chr9 9061083 9061221 -115014951 - MER63A DNA AcHobo -29 181 36 7 654 4222 160 9 3 chr9 9061549 9062220 -115013952 + Lx LINE L1 5979 6653 -1 7 654 373 125 0 0 chr9 9062243 9062299 -115013873 + ORR1A4 LTR MaLR 274 329 0 7 654 728 99 128 32 chr9 9062387 9062512 -115013660 + B1_Mus1 SINE Alu 12 148 0 8 654 884 120 200 28 chr9 9062537 9062717 -115013455 - RLTR11B LTR ERVK 0 453 243 8 654 32132 99 27 18 chr9 9062717 9063856 -115012316 + L1Md_F2 LINE L1 382 1531 -4352 8 654 4782 63 26 0 chr9 9063856 9064428 -115011744 + LTRIS_Mus LTR ERV1 1 587 0 8 654 32132 84 3 5 chr9 9064428 9068489 -115007683 + L1Md_F2 LINE L1 1532 5586 -297 8 654 7998 67 12 8 chr9 9068490 9069481 -115006691 + L1Md_F2 LINE L1 5588 6582 0 8 654 918 92 0 0 chr9 9069490 9069620 -115006552 + (GAAA)n Simple_repeat Simple_repeat 3 132 0 8 654 2327 167 13 5 chr9 9069620 9070005 -115006167 + Lx4B LINE L1 6457 6844 -214 8 654 299 218 98 10 chr9 9070001 9070103 -115006069 + Lx5 LINE L1 6940 7050 0 8 654 198 0 0 0 chr9 9070501 9070523 -115005649 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 8 654 670 262 74 35 chr9 9070653 9070855 -115005317 - B3 SINE B2 -6 210 1 8 654 564 304 98 62 chr9 9071235 9071509 -115004663 - B4A SINE B4 -8 284 1 8 654 25 0 0 0 chr9 9071672 9071697 -115004475 + AT_rich Low_complexity Low_complexity 1 25 0 9 654 372 254 43 17 chr9 9071804 9071920 -115004252 + PB1D9 SINE Alu 2 120 0 9 654 279 0 0 0 chr9 9071933 9071964 -115004208 + (TA)n Simple_repeat Simple_repeat 1 31 0 9 654 225 0 0 0 chr9 9071964 9071988 -115004184 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 654 384 22 0 0 chr9 9072301 9072346 -115003826 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 654 720 246 71 52 chr9 9073549 9073759 -115002413 - B3 SINE B2 -2 214 1 9 654 255 164 0 0 chr9 9074662 9074723 -115001449 + A-rich Low_complexity Low_complexity 1 61 0 9 654 247 253 40 0 chr9 9075327 9075402 -115000770 + CT-rich Low_complexity Low_complexity 4 81 0 9 654 22 0 0 0 chr9 9075665 9075687 -115000485 + AT_rich Low_complexity Low_complexity 1 22 0 9 654 290 131 33 0 chr9 9075771 9075832 -115000340 + T-rich Low_complexity Low_complexity 4 66 0 9 654 2441 148 48 8 chr9 9076162 9076558 -114999614 + MTC LTR MaLR 9 420 -1 1 654 276 53 0 0 chr9 9076865 9076903 -114999269 + (A)n Simple_repeat Simple_repeat 1 38 0 1 654 296 281 42 34 chr9 9077049 9077167 -114999005 + RMER5 LTR ERV1 404 522 -12 1 654 1271 211 193 9 chr9 9078455 9078771 -114997401 + ORR1D1 LTR MaLR 1 374 0 1 654 5384 47 2 0 chr9 9078851 9079466 -114996706 + L1Md_A LINE L1 5967 6582 0 1 654 303 256 167 0 chr9 9079476 9079566 -114996606 - B1F SINE Alu -9 140 36 1 654 910 261 24 0 chr9 9079949 9080156 -114996016 - B3 SINE B2 -4 212 1 1 654 594 315 19 0 chr9 9080261 9080423 -114995749 - ID_B1 SINE B4 -2 222 58 1 654 307 273 44 29 chr9 9080821 9080957 -114995215 + L1M5 LINE L1 5352 5489 -705 1 654 680 232 44 31 chr9 9080961 9081121 -114995051 + RSINE1 SINE B4 4 165 0 1 654 415 363 128 24 chr9 9081399 9081650 -114994522 - B4 SINE B4 -10 282 6 1 654 387 0 0 0 chr9 9081891 9081934 -114994238 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 654 502 231 6 6 chr9 9082621 9082791 -114993381 + (TG)n Simple_repeat Simple_repeat 1 170 0 1 654 236 333 68 10 chr9 9082811 9082914 -114993258 - LTR16E2 LTR ERVL -62 506 398 1 654 237 254 0 0 chr9 9083009 9083068 -114993104 + L1Md_F LINE L1 647 705 -5814 1 654 30183 126 15 18 chr9 9083076 9089575 -114986597 + L1_Mus2 LINE L1 102 6565 -1 1 654 552 30 0 0 chr9 9090220 9090286 -114985886 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 654 453 36 0 0 chr9 9090684 9090739 -114985433 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 654 614 313 0 0 chr9 9090740 9090890 -114985282 - B3A SINE B2 -44 154 5 1 654 281 47 23 0 chr9 9090908 9090951 -114985221 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 1 654 500 111 12 0 chr9 9091016 9091097 -114985075 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 654 734 243 159 6 chr9 9091187 9091369 -114984803 + ID_B1 SINE B4 3 212 -12 1 654 452 303 97 15 chr9 9092388 9092522 -114983650 + RSINE1 SINE B4 2 146 -19 1 654 500 30 0 15 chr9 9092533 9092600 -114983572 + (TAAA)n Simple_repeat Simple_repeat 2 67 0 1 654 229 228 25 0 chr9 9093011 9093090 -114983082 + (CATATA)n Simple_repeat Simple_repeat 6 86 0 1 654 287 252 130 45 chr9 9093278 9093432 -114982740 + L3b LINE CR1 181 347 -135 1 654 350 344 94 58 chr9 9095358 9095549 -114980623 - B3A SINE B2 0 198 1 1 654 434 189 63 39 chr9 9096124 9096251 -114979921 + RMER17B LTR ERVK 330 459 -499 1 654 182 159 45 0 chr9 9096251 9096295 -114979877 + A-rich Low_complexity Low_complexity 2 47 0 1 654 421 284 95 0 chr9 9096588 9096736 -114979436 + ID_B1 SINE B4 63 224 0 1 654 4586 180 78 14 chr9 9096923 9097204 -114978968 + RMER13A LTR ERVK 5 314 -546 1 654 353 39 0 19 chr9 9097204 9097256 -114978916 + (GTATG)n Simple_repeat Simple_repeat 1 51 0 1 654 4586 180 78 14 chr9 9097256 9097778 -114978394 + RMER13A LTR ERVK 315 860 0 1 654 1346 96 11 0 chr9 9098294 9098471 -114977701 + B2_Mm1t SINE B2 2 180 -13 1 654 351 127 9 18 chr9 9098488 9098552 -114977620 + B2_Mm2 SINE B2 48 114 -102 1 654 378 0 0 0 chr9 9098568 9098610 -114977562 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 654 537 220 106 35 chr9 9098712 9098882 -114977290 + B3A SINE B2 2 183 -15 1 654 318 336 75 0 chr9 9100228 9100362 -114975810 + Lx8 LINE L1 6892 7035 -438 1 654 588 279 127 45 chr9 9100413 9100744 -114975428 + Lx8 LINE L1 7115 7472 -1 1 654 478 241 0 9 chr9 9101546 9101563 -114974609 + B4A SINE B4 70 85 -207 1 654 238 306 33 75 chr9 9101563 9101683 -114974489 + PB1D10 SINE Alu 2 116 -1 1 654 978 289 30 106 chr9 9101725 9102132 -114974040 + MTEa LTR MaLR 2 377 -2 1 654 189 121 0 0 chr9 9102931 9102964 -114973208 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 1 654 319 260 0 10 chr9 9102964 9103065 -114973107 + (TG)n Simple_repeat Simple_repeat 2 101 0 1 654 267 122 0 0 chr9 9103732 9103781 -114972391 + (TTG)n Simple_repeat Simple_repeat 2 50 0 1 654 249 57 0 0 chr9 9103797 9103832 -114972340 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 654 405 339 111 21 chr9 9103834 9104069 -114972103 - B4 SINE B4 -35 257 2 1 654 185 161 32 0 chr9 9105506 9105537 -114970635 - L4 LINE RTE -416 1613 1582 1 654 860 249 80 0 chr9 9105890 9106091 -114970081 + ID_B1 SINE B4 1 217 -7 1 654 279 0 0 0 chr9 9106457 9106488 -114969684 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 654 582 307 78 12 chr9 9106488 9106781 -114969391 - MER58B DNA MER1_type -18 323 5 1 654 257 341 53 61 chr9 9107043 9107174 -114968998 + ORR1E LTR MaLR 48 177 -182 1 654 503 107 12 0 chr9 9107584 9107668 -114968504 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 654 482 269 15 30 chr9 9108007 9108141 -114968031 - ID_B1 SINE B4 -7 217 86 1 654 203 167 143 65 chr9 9108400 9108477 -114967695 + L3 LINE CR1 3554 3636 -853 1 654 550 224 6 120 chr9 9108793 9108960 -114967212 + B1_Mur1 SINE Alu 1 148 -1 1 654 189 0 0 0 chr9 9109031 9109052 -114967120 + (A)n Simple_repeat Simple_repeat 1 21 0 1 654 218 288 175 17 chr9 9110003 9110123 -114966049 + MIR SINE MIR 88 226 -36 1 654 772 216 0 7 chr9 9110574 9110709 -114965463 + B1_Mur3 SINE Alu 1 134 -15 1 654 336 102 0 0 chr9 9110746 9110795 -114965377 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1 654 518 329 0 26 chr9 9110795 9110951 -114965221 + B3A SINE B2 27 178 -20 1 654 300 357 27 34 chr9 9112155 9112303 -114963869 + B1F1 SINE Alu 3 149 0 1 654 24 0 0 0 chr9 9112448 9112472 -114963700 + AT_rich Low_complexity Low_complexity 1 24 0 1 654 224 300 48 143 chr9 9113895 9114105 -114962067 + L2b LINE L2 3182 3371 -4 1 654 538 329 38 38 chr9 9114943 9115101 -114961071 + RSINE1 SINE B4 2 159 -6 1 654 201 94 0 0 chr9 9116428 9116460 -114959712 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 654 180 0 0 0 chr9 9116461 9116481 -114959691 + (A)n Simple_repeat Simple_repeat 1 20 0 1 654 222 225 0 0 chr9 9116482 9116562 -114959610 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 654 581 288 56 98 chr9 9116924 9117209 -114958963 - B4 SINE B4 -18 274 2 1 654 349 316 0 0 chr9 9117318 9117416 -114958756 + MTEa LTR MaLR 82 179 -200 1 654 371 305 122 10 chr9 9117535 9117717 -114958455 + B3A SINE B2 1 205 -11 1 654 21 0 0 0 chr9 9117717 9117738 -114958434 + AT_rich Low_complexity Low_complexity 1 21 0 1 654 196 100 24 24 chr9 9120226 9120267 -114955905 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1 654 309 344 0 21 chr9 9122848 9123009 -114953163 - MIR SINE MIR -95 167 16 1 654 24 32 0 0 chr9 9123105 9123136 -114953036 + AT_rich Low_complexity Low_complexity 1 31 0 1 654 821 208 0 6 chr9 9123300 9123658 -114952514 + (CATATA)n Simple_repeat Simple_repeat 1 355 0 1 654 471 35 0 0 chr9 9125845 9125902 -114950270 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 654 556 348 10 19 chr9 9126428 9126636 -114949536 - ID_B1 SINE B4 -8 216 11 1 654 577 253 34 101 chr9 9127561 9127887 -114948285 - MTD LTR MaLR 0 419 97 1 654 342 45 0 0 chr9 9128700 9128744 -114947428 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 654 1553 49 27 0 chr9 9128885 9129069 -114947103 + B2_Mm1t SINE B2 2 190 -3 1 654 446 0 19 0 chr9 9130181 9130235 -114945937 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 654 465 297 35 0 chr9 9130745 9130890 -114945282 + RSINE1 SINE B4 12 161 -4 1 654 871 278 14 14 chr9 9131427 9131639 -114944533 + ID_B1 SINE B4 2 213 -11 1 654 1108 157 0 6 chr9 9132082 9132262 -114943910 + MT2B LTR ERVL 343 521 -80 1 654 430 277 27 0 chr9 9132262 9132374 -114943798 - B1_Mur1 SINE Alu -34 115 1 1 654 16523 91 31 13 chr9 9132410 9135459 -114940713 + L1VL4 LINE L1 221 3410 -149 1 654 792 63 0 0 chr9 9135751 9135862 -114940310 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 654 802 326 5 9 chr9 9135966 9136189 -114939983 - ID_B1 SINE B4 -2 222 1 1 654 327 320 24 16 chr9 9136189 9136316 -114939856 - B1F SINE Alu -1 148 21 1 654 542 274 63 78 chr9 9137259 9137528 -114938644 - Lx8 LINE L1 -15 7458 7194 1 654 2310 152 16 6 chr9 9138058 9138422 -114937750 + RLTR9A LTR ERVK 1 368 0 1 654 283 231 24 49 chr9 9139197 9139279 -114936893 + MTEa LTR MaLR 282 361 -18 1 654 429 229 119 0 chr9 9140168 9140286 -114935886 - ID_B1 SINE B4 -3 221 90 1 654 201 94 0 0 chr9 9141170 9141202 -114934970 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 654 1033 296 7 20 chr9 9141239 9141535 -114934637 - B4A SINE B4 0 292 1 1 654 986 155 183 52 chr9 9143674 9143865 -114932307 + B3 SINE B2 1 216 0 1 654 203 274 0 16 chr9 9145030 9145093 -114931079 + GA-rich Low_complexity Low_complexity 1 62 0 1 654 490 291 143 36 chr9 9147043 9147239 -114928933 + ID_B1 SINE B4 8 224 0 1 654 204 67 0 0 chr9 9147239 9147269 -114928903 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 1 654 554 307 104 49 chr9 9147272 9147618 -114928554 + Lx8 LINE L1 7108 7472 -1 1 654 449 305 59 13 chr9 9147700 9147939 -114928233 + L1MB3 LINE L1 5681 5930 -253 1 654 463 262 225 40 chr9 9148129 9148280 -114927892 + B3A SINE B2 1 179 -19 2 654 244 210 39 29 chr9 9148281 9148384 -114927788 + (CATA)n Simple_repeat Simple_repeat 3 106 0 2 654 562 325 22 9 chr9 9148583 9148906 -114927266 + Lx9 LINE L1 7112 7472 -172 2 654 255 61 0 0 chr9 9148912 9148945 -114927227 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2 654 24 0 0 0 chr9 9149028 9149052 -114927120 + AT_rich Low_complexity Low_complexity 1 24 0 2 654 257 224 14 29 chr9 9149821 9149890 -114926282 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 2 654 258 243 14 14 chr9 9149964 9150035 -114926137 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 2 654 366 23 0 0 chr9 9150050 9150093 -114926079 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 654 520 60 0 0 chr9 9150715 9150782 -114925390 + B1_Mus2 SINE Alu 80 146 -1 2 654 183 139 0 0 chr9 9150782 9150818 -114925354 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 654 252 272 79 65 chr9 9151011 9151104 -114925068 + B4 SINE B4 209 292 0 2 654 220 156 22 22 chr9 9151363 9151409 -114924763 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 2 654 614 49 12 0 chr9 9152184 9152266 -114923906 + (GGA)n Simple_repeat Simple_repeat 2 84 0 2 654 357 62 0 0 chr9 9152283 9152331 -114923841 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 2 654 1042 93 8 8 chr9 9152348 9152601 -114923571 + (GAAA)n Simple_repeat Simple_repeat 1 253 0 2 654 303 264 163 16 chr9 9152601 9152724 -114923448 + HAL1-3A_ME LINE L1 2297 2437 -421 2 654 270 237 26 26 chr9 9152724 9152802 -114923370 + GA-rich Low_complexity Low_complexity 1 78 0 2 654 360 0 0 0 chr9 9153097 9153137 -114923035 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 654 839 266 90 40 chr9 9153491 9153792 -114922380 + ORR1E LTR MaLR 21 336 -23 2 654 312 324 68 34 chr9 9154102 9154249 -114921923 + RSINE1 SINE B4 4 155 -10 2 654 473 311 25 0 chr9 9154359 9154481 -114921691 - B3 SINE B2 -37 179 55 2 654 186 43 0 0 chr9 9154572 9154595 -114921577 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 654 284 269 88 44 chr9 9154628 9154741 -114921431 - PB1D9 SINE Alu 0 120 3 2 654 548 321 0 7 chr9 9155714 9155849 -114920323 + B4A SINE B4 3 136 -156 2 654 246 299 0 25 chr9 9155926 9156005 -114920167 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 2 654 398 278 122 79 chr9 9156084 9156338 -114919834 + Lx8 LINE L1 6973 7237 -236 2 654 269 292 0 0 chr9 9156353 9156418 -114919754 + RMER15 LTR ERVL 406 470 -105 2 654 256 53 0 0 chr9 9156464 9156502 -114919670 + B1_Mus2 SINE Alu 110 147 0 2 654 398 20 20 0 chr9 9156600 9156651 -114919521 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 2 654 689 248 14 0 chr9 9156667 9156812 -114919360 + B1_Mus1 SINE Alu 1 147 -1 2 654 702 0 0 0 chr9 9156834 9156912 -114919260 + (GGGGA)n Simple_repeat Simple_repeat 5 82 0 2 654 28 71 0 0 chr9 9157298 9157354 -114918818 + AT_rich Low_complexity Low_complexity 1 56 0 2 654 920 302 79 22 chr9 9158511 9158739 -114917433 + L1MA6 LINE L1 4006 4245 -1901 2 654 624 281 39 6 chr9 9158739 9158918 -114917254 + B3A SINE B2 2 186 -12 2 654 920 304 103 50 chr9 9158918 9159603 -114916569 + L1MA6 LINE L1 4228 4968 -1175 2 654 915 247 70 78 chr9 9159617 9160002 -114916170 - MTE2a LTR MaLR 0 379 18 2 654 351 0 0 0 chr9 9160003 9160042 -114916130 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 654 261 0 0 0 chr9 9160043 9160072 -114916100 + (A)n Simple_repeat Simple_repeat 1 29 0 2 654 256 265 0 0 chr9 9160199 9160267 -114915905 + L1MA6 LINE L1 5154 5221 -922 2 654 269 311 184 23 chr9 9160392 9160769 -114915403 + L1MA6 LINE L1 5409 5838 -453 2 654 2678 146 84 20 chr9 9160769 9161258 -114914914 + RLTR28 LTR ERVL 3 522 -2 2 654 269 280 219 6 chr9 9161258 9161340 -114914832 + L1MA6 LINE L1 5839 5929 -362 2 654 207 100 0 0 chr9 9161549 9161579 -114914593 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2 654 549 129 36 57 chr9 9163068 9163208 -114912964 + L1_Mus4 LINE L1 6490 6626 -10 2 654 414 279 19 70 chr9 9163232 9163254 -114912918 + ID_B1 SINE B4 70 219 -5 2 654 783 176 15 0 chr9 9163254 9163390 -114912782 + B1_Mur4 SINE Alu 8 145 -5 2 654 267 104 0 0 chr9 9163579 9163627 -114912545 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 2 654 198 0 0 0 chr9 9163629 9163651 -114912521 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 654 653 242 39 87 chr9 9164273 9164504 -114911668 + ID_B1 SINE B4 2 221 -3 2 654 182 98 49 0 chr9 9164505 9164546 -114911626 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 654 734 276 63 15 chr9 9164700 9164906 -114911266 + B3 SINE B2 1 216 0 2 654 991 260 142 37 chr9 9166188 9166539 -114909633 - MTD LTR MaLR -14 405 18 2 654 218 311 40 13 chr9 9167186 9167261 -114908911 + ID4 SINE ID 1 77 -6 2 654 221 0 0 33 chr9 9167691 9167721 -114908451 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 654 23 54 0 0 chr9 9169482 9169519 -114906653 + AT_rich Low_complexity Low_complexity 1 37 0 2 654 298 57 38 0 chr9 9169969 9170022 -114906150 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2 654 1213 62 0 7 chr9 9170022 9170168 -114906004 - B1_Mm SINE Alu -2 145 1 2 654 795 262 16 16 chr9 9170276 9170466 -114905706 + B3A SINE B2 9 198 0 2 654 567 332 47 73 chr9 9170908 9171252 -114904920 + ORR1E LTR MaLR 18 352 -7 2 654 23 0 0 0 chr9 9172172 9172195 -114903977 + AT_rich Low_complexity Low_complexity 1 23 0 2 654 369 278 30 30 chr9 9172344 9172444 -114903728 - PB1D10 SINE Alu -11 106 7 2 654 277 250 69 50 chr9 9172920 9172932 -114903240 + B1F SINE Alu 46 148 -1 2 654 333 281 0 0 chr9 9172932 9173021 -114903151 + ID_B1 SINE B4 136 224 0 2 654 283 329 156 16 chr9 9173875 9174125 -114902047 - B4A SINE B4 -4 288 4 2 654 729 228 43 6 chr9 9174424 9174587 -114901585 + ID_B1 SINE B4 72 247 -45 2 654 229 282 48 60 chr9 9174604 9174687 -114901485 + B3A SINE B2 6 87 -111 2 655 528 272 79 79 chr9 9175314 9175593 -114900579 + B4 SINE B4 2 280 -12 2 655 305 250 0 13 chr9 9175606 9175683 -114900489 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 655 27 0 0 0 chr9 9175685 9175712 -114900460 + AT_rich Low_complexity Low_complexity 1 27 0 2 655 203 170 21 0 chr9 9176952 9176999 -114899173 + CT-rich Low_complexity Low_complexity 2 49 0 2 655 358 266 49 74 chr9 9177000 9177122 -114899050 - PB1D9 SINE Alu -1 119 1 2 655 221 300 143 0 chr9 9177562 9177632 -114898540 + ID2 SINE ID 2 81 -2 2 655 245 229 31 62 chr9 9178882 9178947 -114897225 + ID4 SINE ID 12 74 -9 2 655 263 283 487 0 chr9 9178904 9179029 -114897143 + ID_B1 SINE B4 32 217 -7 2 655 4982 34 5 5 chr9 9179128 9179690 -114896482 - L1Md_F2 LINE L1 0 6582 6021 2 655 282 321 18 42 chr9 9180718 9180855 -114895317 + MIR SINE MIR 36 176 -92 2 655 301 264 85 97 chr9 9181152 9181328 -114894844 + MER31B LTR ERV1 55 228 -238 2 655 293 321 95 37 chr9 9182910 9183237 -114892935 - RMER17C LTR ERVK -49 361 16 2 655 292 312 24 114 chr9 9184713 9184836 -114891336 + PB1D7 SINE Alu 4 115 -5 2 655 765 217 119 11 chr9 9184936 9185113 -114891059 + B3 SINE B2 2 197 -19 2 655 274 298 10 41 chr9 9185782 9185880 -114890292 + PB1D10 SINE Alu 1 95 -22 2 655 1368 79 0 0 chr9 9185903 9186119 -114890053 + (GAAA)n Simple_repeat Simple_repeat 1 216 0 2 655 242 325 65 32 chr9 9186288 9186412 -114889760 - MIR SINE MIR -27 235 108 2 655 299 113 19 0 chr9 9186552 9186605 -114889567 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2 655 767 192 0 8 chr9 9186999 9187130 -114889042 + B3 SINE B2 1 130 -86 2 655 407 314 42 0 chr9 9187564 9187682 -114888490 + ORR1E LTR MaLR 2 124 -235 2 655 382 222 269 23 chr9 9189272 9189443 -114886729 - ID_B1 SINE B4 -10 214 2 2 655 1909 229 26 35 chr9 9189754 9190211 -114885961 + Lx7 LINE L1 6621 7073 -623 2 655 641 234 22 7 chr9 9190826 9190964 -114885208 + B1_Mur4 SINE Alu 11 150 0 2 655 1984 5 0 0 chr9 9191301 9191513 -114884659 + L1Md_A LINE L1 6371 6582 0 2 655 626 285 7 28 chr9 9191725 9191866 -114884306 - RSINE1 SINE B4 -24 141 4 2 655 720 204 35 14 chr9 9191957 9192101 -114884071 + B1_Mur1 SINE Alu 3 149 0 2 655 397 264 61 46 chr9 9192244 9192375 -114883797 + RSINE1 SINE B4 20 152 -13 2 655 981 72 0 0 chr9 9192403 9192542 -114883630 + (GA)n Simple_repeat Simple_repeat 2 140 0 2 655 23 0 0 0 chr9 9193681 9193704 -114882468 + GC_rich Low_complexity Low_complexity 1 23 0 2 655 523 221 279 11 chr9 9193833 9194016 -114882156 - B4A SINE B4 -59 233 2 2 655 32 26 0 0 chr9 9194090 9194129 -114882043 + AT_rich Low_complexity Low_complexity 1 39 0 2 655 286 244 21 108 chr9 9194275 9194395 -114881777 + PB1D7 SINE Alu 16 119 -1 2 655 1037 196 36 5 chr9 9194965 9195160 -114881012 + B3 SINE B2 1 201 -15 2 655 759 248 6 69 chr9 9195268 9195441 -114880731 - RSINE1 SINE B4 0 165 4 2 655 1386 228 38 100 chr9 9196658 9197057 -114879115 + MTE2a LTR MaLR 6 379 0 2 655 666 259 14 0 chr9 9197058 9197205 -114878967 + MTE2a-int LTR MaLR 3 151 -1429 2 655 778 284 52 48 chr9 9197190 9197460 -114878712 + ORR1E LTR MaLR 87 357 -2 2 655 211 239 149 40 chr9 9197580 9197654 -114878518 - B1_Mur2 SINE Alu 0 149 68 2 655 195 100 0 0 chr9 9197974 9198004 -114878168 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2 655 634 275 49 0 chr9 9198046 9198188 -114877984 + B3A SINE B2 9 157 -41 3 655 270 0 0 0 chr9 9198194 9198224 -114877948 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 655 36 53 0 0 chr9 9198237 9198294 -114877878 + AT_rich Low_complexity Low_complexity 1 57 0 3 655 22 0 0 0 chr9 9200369 9200391 -114875781 + AT_rich Low_complexity Low_complexity 1 22 0 3 655 441 108 14 0 chr9 9200404 9200478 -114875694 - Lx4A LINE L1 -3 7055 6981 3 655 605 261 88 56 chr9 9200484 9200699 -114875473 - ID_B1 SINE B4 0 224 3 3 655 1757 90 171 48 chr9 9201582 9201847 -114874325 + L1_Mus3 LINE L1 6284 6600 -38 3 655 4353 57 0 2 chr9 9201847 9202357 -114873815 + L1_Mus1 LINE L1 6059 6567 0 3 655 1757 90 171 48 chr9 9202357 9202407 -114873765 + L1_Mus3 LINE L1 6601 6638 0 3 655 346 288 119 8 chr9 9202637 9202661 -114873511 + B1F SINE Alu 1 140 -9 3 655 409 297 10 10 chr9 9202661 9202763 -114873409 + ID_B1 SINE B4 114 215 -9 3 655 471 78 0 0 chr9 9202768 9202832 -114873340 + (GGGA)n Simple_repeat Simple_repeat 4 67 0 3 655 804 286 173 28 chr9 9203336 9203689 -114872483 - MTD LTR MaLR -15 404 1 3 655 477 198 10 0 chr9 9203852 9203948 -114872224 - ORR1B1 LTR MaLR 0 394 298 3 655 628 183 9 0 chr9 9203955 9204070 -114872102 - ORR1B1 LTR MaLR -278 116 1 3 655 942 222 63 0 chr9 9204070 9204259 -114871913 - B3 SINE B2 -14 202 2 3 655 634 24 24 0 chr9 9204259 9204343 -114871829 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 655 215 195 0 0 chr9 9204344 9204385 -114871787 - RSINE1 SINE B4 -38 127 87 3 655 346 300 68 29 chr9 9204981 9205084 -114871088 + ID_B1 SINE B4 87 193 -31 3 655 380 20 20 0 chr9 9205096 9205145 -114871027 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 655 350 248 23 46 chr9 9205344 9205475 -114870697 - Lx7 LINE L1 -8 7688 7561 3 655 3476 211 54 42 chr9 9205540 9206169 -114870003 - Lx7 LINE L1 -306 7390 6758 3 655 1200 143 111 19 chr9 9206169 9206376 -114869796 - URR1A DNA MER1_type 0 226 1 3 655 3476 211 54 42 chr9 9206376 9206593 -114869579 - Lx7 LINE L1 -939 6757 6534 3 655 441 90 0 0 chr9 9207100 9207167 -114869005 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 655 531 295 39 0 chr9 9207175 9207304 -114868868 - RSINE1 SINE B4 -24 141 8 3 655 546 265 54 0 chr9 9207386 9207533 -114868639 - RSINE1 SINE B4 0 165 11 3 655 1082 294 53 12 chr9 9207535 9207872 -114868300 - ORR1E LTR MaLR -6 353 3 3 655 182 255 39 19 chr9 9209185 9209237 -114866935 - L3 LINE CR1 -506 3983 3931 3 655 2040 185 59 5 chr9 9209542 9209835 -114866337 - MTC LTR MaLR -8 413 99 3 655 1468 90 26 5 chr9 9209835 9210025 -114866147 - B2_Mm2 SINE B2 -1 194 1 3 655 2040 185 59 5 chr9 9210025 9210123 -114866049 - MTC LTR MaLR -323 98 2 3 655 458 305 7 34 chr9 9210254 9210400 -114865772 + ID_B1 SINE B4 81 222 -2 3 655 294 211 0 63 chr9 9210401 9210512 -114865660 + A-rich Low_complexity Low_complexity 4 107 0 3 655 1166 257 50 44 chr9 9211723 9212085 -114864087 + ORR1D2 LTR MaLR 7 370 0 3 655 355 307 43 9 chr9 9212180 9212295 -114863877 - B1F SINE Alu -20 129 11 3 655 180 0 0 0 chr9 9212621 9212641 -114863531 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 655 393 284 0 22 chr9 9212672 9212762 -114863410 + B3 SINE B2 73 160 -56 3 655 247 163 20 0 chr9 9212792 9212841 -114863331 + L1MC LINE L1 3834 3883 -2263 3 655 225 290 37 9 chr9 9213182 9213290 -114862882 + L1MC2 LINE L1 6113 6223 -121 3 655 478 257 239 8 chr9 9213608 9213851 -114862321 - Lx8 LINE L1 -2 7471 7173 3 655 215 122 0 20 chr9 9214865 9214915 -114861257 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 655 594 297 77 33 chr9 9215670 9216024 -114860148 + ORR1E LTR MaLR 3 370 0 3 655 498 283 174 0 chr9 9216108 9216292 -114859880 - ID_B1 SINE B4 -7 217 2 3 655 543 289 90 20 chr9 9216312 9216513 -114859659 - B3 SINE B2 0 216 2 3 655 457 222 22 0 chr9 9217257 9217347 -114858825 + RSINE1 SINE B4 6 97 -68 3 655 279 0 0 0 chr9 9218039 9218070 -114858102 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 655 183 241 138 12 chr9 9218869 9218949 -114857223 + L3 LINE CR1 722 811 -3678 3 655 3183 159 17 28 chr9 9219512 9220042 -114856130 - RLTR28 LTR ERVL 0 524 1 3 655 180 125 0 0 chr9 9220548 9220580 -114855592 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 655 27 0 0 0 chr9 9221215 9221242 -114854930 + AT_rich Low_complexity Low_complexity 1 27 0 3 655 511 134 17 0 chr9 9222110 9222229 -114853943 + (CA)n Simple_repeat Simple_repeat 1 121 0 3 655 652 234 55 85 chr9 9222738 9222775 -114853397 - B3A SINE B2 -1 197 167 3 655 195 69 0 0 chr9 9222775 9222804 -114853368 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 655 652 234 55 85 chr9 9222804 9222967 -114853205 - B3A SINE B2 -32 166 3 3 655 672 272 91 54 chr9 9222974 9223327 -114852845 - RCHARR1 DNA MER1_type -485 489 124 3 655 342 191 200 0 chr9 9224074 9224179 -114851993 + L1MB7 LINE L1 6049 6174 -10 3 655 519 226 103 22 chr9 9224244 9224380 -114851792 + B1_Mur2 SINE Alu 1 147 -2 3 655 375 353 17 8 chr9 9224558 9224675 -114851497 - RSINE1 SINE B4 -4 161 44 3 655 864 59 46 34 chr9 9224752 9224927 -114851245 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 3 655 455 259 176 21 chr9 9224942 9225135 -114851037 - ID_B1 SINE B4 0 224 2 3 655 643 245 43 52 chr9 9225443 9225654 -114850518 + B3 SINE B2 3 211 -5 3 655 430 278 0 9 chr9 9226198 9226307 -114849865 + B1F SINE Alu 1 108 -41 3 655 207 182 0 0 chr9 9226324 9226357 -114849815 + (ATGGTG)n Simple_repeat Simple_repeat 6 38 0 3 655 518 103 11 0 chr9 9226367 9226454 -114849718 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 3 655 329 238 10 0 chr9 9226679 9226780 -114849392 + (TA)n Simple_repeat Simple_repeat 1 102 0 3 655 356 248 76 23 chr9 9227013 9227145 -114849027 + B1_Mur3 SINE Alu 1 139 -10 3 655 252 0 0 0 chr9 9227506 9227534 -114848638 + (A)n Simple_repeat Simple_repeat 1 28 0 3 655 1395 219 54 48 chr9 9227661 9228128 -114848044 + RLTR31A_Mm LTR ERVK 31 584 0 3 655 393 289 0 17 chr9 9228289 9228405 -114847767 - PB1D10 SINE Alu -3 114 1 3 655 282 116 0 0 chr9 9228676 9228719 -114847453 + (TCC)n Simple_repeat Simple_repeat 1 43 0 3 655 505 252 24 0 chr9 9228719 9228846 -114847326 - ID_B1 SINE B4 -5 219 90 3 655 259 274 23 86 chr9 9230527 9230655 -114845517 - B1_Mur1 SINE Alu -2 147 28 3 655 338 200 31 147 chr9 9230540 9230669 -114845503 - ID_B1 SINE B4 -17 207 94 3 655 4905 109 60 140 chr9 9230941 9231982 -114844190 + RMER17B LTR ERVK 1 958 0 3 655 3097 68 5 8 chr9 9232168 9232565 -114843607 - MTA_Mm LTR MaLR 0 396 1 3 655 939 243 182 14 chr9 9232706 9233053 -114843119 - MTD LTR MaLR -14 405 1 3 655 246 128 0 0 chr9 9233084 9233123 -114843049 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 3 655 225 305 95 44 chr9 9233370 9233504 -114842668 - MER2 DNA MER2_type -74 271 129 3 655 1364 163 74 188 chr9 9233504 9233935 -114842237 + ORR1C2 LTR MaLR 1 382 -2 3 655 225 305 95 44 chr9 9233935 9233958 -114842214 - MER2 DNA MER2_type -217 128 106 3 655 735 211 47 215 chr9 9234096 9234185 -114841987 + B4 SINE B4 2 80 -212 3 655 940 56 135 0 chr9 9234185 9234311 -114841861 + B1_Mus1 SINE Alu 1 143 -5 3 655 735 211 47 215 chr9 9234311 9234565 -114841607 + B4 SINE B4 81 287 -5 3 655 312 43 0 0 chr9 9234915 9234961 -114841211 + B1_Mur4 SINE Alu 105 150 0 3 655 264 56 0 0 chr9 9234961 9234973 -114841199 + (A)n Simple_repeat Simple_repeat 1 12 0 3 655 1300 14 0 0 chr9 9234973 9235120 -114841052 + B1_Mus2 SINE Alu 1 147 0 3 655 264 56 0 0 chr9 9235120 9235143 -114841029 + (A)n Simple_repeat Simple_repeat 1 23 0 3 655 265 268 33 44 chr9 9235410 9235500 -114840672 + PB1 SINE Alu 21 109 -18 3 655 770 259 17 0 chr9 9235520 9235694 -114840478 + B3 SINE B2 35 211 -5 3 655 305 346 10 0 chr9 9235705 9235806 -114840366 + PB1D10 SINE Alu 7 108 -9 3 655 267 296 0 0 chr9 9235991 9236072 -114840100 + PB1D10 SINE Alu 10 90 -27 3 655 207 0 0 0 chr9 9236082 9236105 -114840067 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 3 655 378 0 0 0 chr9 9236524 9236566 -114839606 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 655 389 272 19 10 chr9 9236596 9236700 -114839472 - RSINE1 SINE B4 -60 105 1 3 655 1190 55 0 0 chr9 9236784 9236930 -114839242 + B1_Mus2 SINE Alu 2 147 0 3 655 186 43 0 0 chr9 9236930 9236953 -114839219 + (A)n Simple_repeat Simple_repeat 1 23 0 3 655 237 104 0 59 chr9 9238195 9238246 -114837926 - PB1 SINE Alu -1 148 84 3 655 240 140 20 0 chr9 9238287 9238337 -114837835 + (CAA)n Simple_repeat Simple_repeat 2 52 0 3 655 359 245 31 31 chr9 9239654 9239751 -114836421 + PB1D10 SINE Alu 9 105 -12 3 655 1177 68 0 0 chr9 9240121 9240267 -114835905 + B1_Mus2 SINE Alu 1 146 -1 3 655 379 328 33 0 chr9 9240494 9240616 -114835556 - RSINE1 SINE B4 -37 128 3 3 655 458 247 209 20 chr9 9241948 9242101 -114834071 - B3A SINE B2 -16 182 1 3 655 456 209 43 17 chr9 9242393 9242510 -114833662 + PB1D9 SINE Alu 1 120 0 3 655 400 324 14 0 chr9 9242856 9243001 -114833171 - RSINE1 SINE B4 -17 148 2 3 655 529 297 26 52 chr9 9243118 9243296 -114832876 + B3A SINE B2 5 181 -17 3 655 482 0 17 0 chr9 9243296 9243354 -114832818 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 655 529 297 26 52 chr9 9243354 9243367 -114832805 + B3A SINE B2 182 191 -7 3 655 1319 81 26 21 chr9 9243395 9243584 -114832588 + B2_Mm2 SINE B2 2 191 -4 3 655 582 156 0 94 chr9 9244137 9244522 -114831650 + CT-rich Low_complexity Low_complexity 1 348 0 4 655 564 136 468 0 chr9 9244714 9244868 -114831304 + URR1A DNA MER1_type 1 226 0 4 655 23 33 0 0 chr9 9245476 9245506 -114830666 + AT_rich Low_complexity Low_complexity 1 30 0 4 655 291 343 106 44 chr9 9245755 9245935 -114830237 - ID_B1 SINE B4 -5 219 29 4 655 678 253 26 8 chr9 9246255 9246624 -114829548 + GA-rich Low_complexity Low_complexity 1 375 0 4 655 1431 47 0 4 chr9 9246624 9246900 -114829272 + (GGA)n Simple_repeat Simple_repeat 1 275 0 4 655 278 280 190 0 chr9 9246969 9247069 -114829103 + PB1D9 SINE Alu 1 119 -1 4 655 315 104 0 0 chr9 9247069 9247117 -114829055 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 655 289 286 0 0 chr9 9247541 9247611 -114828561 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 655 1830 140 36 63 chr9 9247718 9248053 -114828119 - ORR1A3 LTR MaLR 0 326 1 4 655 186 43 0 0 chr9 9248664 9248687 -114827485 + (T)n Simple_repeat Simple_repeat 1 23 0 4 655 264 295 66 9 chr9 9248794 9248900 -114827272 + ID_B1 SINE B4 84 195 -29 4 655 404 242 65 85 chr9 9249202 9249235 -114826937 - B2_Mm2 SINE B2 0 195 163 4 655 243 0 0 0 chr9 9249235 9249262 -114826910 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 655 632 224 49 49 chr9 9249262 9249427 -114826745 - B3A SINE B2 -34 164 1 4 655 546 276 52 0 chr9 9249524 9249658 -114826514 - B1_Mur1 SINE Alu -8 141 1 4 655 366 323 22 36 chr9 9250295 9250323 -114825849 - B1_Mur4 SINE Alu -1 149 14 4 655 512 273 0 0 chr9 9250323 9250433 -114825739 - ID_B1 SINE B4 -21 203 94 4 655 460 310 33 38 chr9 9250757 9250968 -114825204 - B3 SINE B2 0 216 7 4 655 345 261 86 17 chr9 9251286 9251403 -114824769 - ID_B1 SINE B4 -20 204 80 4 655 233 128 21 0 chr9 9251553 9251600 -114824572 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 655 869 261 29 5 chr9 9251711 9251915 -114824257 - B3 SINE B2 -1 215 7 4 655 423 291 0 9 chr9 9252121 9252232 -114823940 + ID_B1 SINE B4 86 195 -29 4 655 236 366 55 31 chr9 9252232 9252244 -114823928 + B1_Mur3 SINE Alu 5 130 -19 4 655 7354 109 3 1 chr9 9252244 9252664 -114823508 - L1_Mm LINE L1 -726 5157 4737 4 655 288 0 0 0 chr9 9252664 9252696 -114823476 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 4 655 7354 109 3 1 chr9 9252696 9253341 -114822831 - L1_Mm LINE L1 -1147 4736 4091 4 655 7974 78 2 0 chr9 9253328 9254769 -114821403 + L1_Mus1 LINE L1 5124 6567 0 4 655 21 0 0 0 chr9 9254781 9254802 -114821370 + AT_rich Low_complexity Low_complexity 1 21 0 4 655 867 256 70 35 chr9 9255419 9255678 -114820494 - B4A SINE B4 -16 276 9 4 655 23 33 0 0 chr9 9255704 9255734 -114820438 + AT_rich Low_complexity Low_complexity 1 30 0 4 655 978 214 23 19 chr9 9255744 9255958 -114820214 - B3 SINE B2 0 216 2 4 655 21 0 0 0 chr9 9256163 9256184 -114819988 + AT_rich Low_complexity Low_complexity 1 21 0 4 655 401 348 5 16 chr9 9256240 9256424 -114819748 - B3A SINE B2 -15 183 2 4 655 596 238 0 0 chr9 9256688 9256810 -114819362 - B1_Mur3 SINE Alu -26 123 2 4 655 1305 108 0 5 chr9 9256830 9257016 -114819156 - B2_Mm2 SINE B2 -10 185 1 4 655 242 185 0 69 chr9 9257025 9257083 -114819089 - Lx8 LINE L1 0 7473 7420 4 655 1513 90 202 4 chr9 9257084 9257351 -114818821 + MTB_Mm LTR MaLR 1 320 -87 4 655 550 232 136 0 chr9 9257351 9257476 -114818696 - Lx8 LINE L1 -164 7309 7168 4 655 1413 234 50 17 chr9 9257718 9258075 -114818097 + ORR1D1 LTR MaLR 5 373 -1 4 655 189 121 0 0 chr9 9258471 9258504 -114817668 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 655 709 184 6 87 chr9 9258529 9258690 -114817482 - B1_Mur3 SINE Alu 0 149 2 4 655 339 85 0 0 chr9 9258690 9258737 -114817435 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 655 439 329 13 7 chr9 9258766 9258919 -114817253 - RSINE1 SINE B4 -8 157 4 4 655 718 151 56 0 chr9 9258951 9259077 -114817095 + B1_Mur4 SINE Alu 5 137 -13 4 655 448 299 63 0 chr9 9259096 9259223 -114816949 + ID_B1 SINE B4 83 217 -7 4 655 485 326 60 71 chr9 9259596 9259949 -114816223 + ORR1E LTR MaLR 6 354 -5 4 655 633 260 7 7 chr9 9259979 9260126 -114816046 + B1_Mus2 SINE Alu 1 147 0 4 655 782 150 0 13 chr9 9260127 9260276 -114815896 + GA-rich Low_complexity Low_complexity 2 148 0 4 655 745 246 5 59 chr9 9260651 9260854 -114815318 + B3A SINE B2 1 192 -6 4 655 180 0 0 0 chr9 9261187 9261207 -114814965 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 655 407 299 0 9 chr9 9261586 9261694 -114814478 - RSINE1 SINE B4 -43 122 16 4 655 337 227 22 39 chr9 9262148 9262250 -114813922 + PB1D10 SINE Alu 12 117 0 4 655 1231 241 30 117 chr9 9262330 9262833 -114813339 + Lx8 LINE L1 6921 7379 -94 4 655 351 0 0 0 chr9 9262833 9262872 -114813300 + (GAA)n Simple_repeat Simple_repeat 3 41 0 4 655 788 70 0 47 chr9 9262872 9263021 -114813151 + (GGGGA)n Simple_repeat Simple_repeat 5 146 0 4 655 297 241 23 0 chr9 9263023 9263110 -114813062 + GA-rich Low_complexity Low_complexity 2 90 0 4 655 297 51 0 0 chr9 9263518 9263557 -114812615 + (CATA)n Simple_repeat Simple_repeat 1 39 0 4 655 428 250 0 35 chr9 9263955 9264071 -114812101 + PB1D10 SINE Alu 5 116 -1 4 655 2079 149 181 18 chr9 9264308 9264760 -114811412 + RLTR11A2 LTR ERVK 2 527 0 4 655 591 232 0 0 chr9 9264760 9264885 -114811287 - B1_Mur1 SINE Alu -22 127 3 4 655 316 241 8 92 chr9 9264779 9264898 -114811274 - MT2B LTR ERVL -339 262 154 4 655 444 268 56 35 chr9 9264907 9265050 -114811122 - B1F SINE Alu -1 148 3 4 655 455 273 27 20 chr9 9265050 9265196 -114810976 - B1F1 SINE Alu 0 149 3 4 655 298 266 127 9 chr9 9265248 9265358 -114810814 + ORR1E LTR MaLR 1 123 -236 4 655 212 197 27 27 chr9 9265411 9265484 -114810688 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 655 274 324 26 18 chr9 9265555 9265668 -114810504 + ORR1E LTR MaLR 251 364 -15 4 655 677 209 394 17 chr9 9266166 9266455 -114809717 + RMER10A LTR ERVL 1 398 0 4 655 223 278 9 126 chr9 9266730 9266841 -114809331 - PB1 SINE Alu -8 119 22 4 655 1228 93 49 6 chr9 9266861 9267044 -114809128 - B2_Mm2 SINE B2 -3 192 2 4 655 23 0 0 0 chr9 9267048 9267071 -114809101 + AT_rich Low_complexity Low_complexity 1 23 0 4 655 376 135 76 0 chr9 9267361 9267456 -114808716 - B1_Mur3 SINE Alu -1 148 9 4 655 418 276 20 0 chr9 9267501 9267599 -114808573 + PB1D9 SINE Alu 2 101 -19 4 655 280 280 19 48 chr9 9267769 9267874 -114808298 - L1MB2 LINE L1 -263 5908 5807 4 655 1625 213 92 2 chr9 9267918 9268322 -114807850 - RMER10A LTR ERVL -2 440 1 4 655 524 247 105 52 chr9 9268448 9268722 -114807450 + RMER10B LTR ERVL 12 296 -146 4 655 792 145 20 46 chr9 9269849 9270001 -114806171 - B1_Mur4 SINE Alu -1 149 2 4 655 1926 182 76 7 chr9 9270054 9270503 -114805669 + RLTR28 LTR ERVL 1 480 -44 4 655 295 212 128 12 chr9 9270623 9270709 -114805463 - RMER5 LTR ERV1 -18 516 421 4 655 448 291 52 26 chr9 9270711 9270866 -114805306 - RMER5 LTR ERV1 -254 280 122 4 655 282 229 0 67 chr9 9270863 9270938 -114805234 + RMER5 LTR ERV1 44 113 -421 4 655 239 276 0 0 chr9 9270962 9271038 -114805134 - L1M3 LINE L1 -874 5272 5197 4 655 244 195 218 0 chr9 9271096 9271183 -114804989 - L1M3 LINE L1 -1080 5060 4955 4 655 784 106 0 0 chr9 9271183 9271306 -114804866 + ORR1C1 LTR MaLR 1 123 -255 4 655 276 30 0 0 chr9 9271340 9271373 -114804799 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 4 655 617 38 0 12 chr9 9271373 9271453 -114804719 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 4 655 1074 106 0 0 chr9 9271455 9271597 -114804575 - B1_Mus1 SINE Alu -6 142 1 4 655 268 356 11 65 chr9 9271959 9272145 -114804027 + L2c LINE L2 3046 3221 -166 4 655 576 262 28 30 chr9 9272593 9272789 -114803383 - B3A SINE B2 0 193 4 4 655 207 88 0 0 chr9 9272844 9272878 -114803294 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 655 606 226 0 31 chr9 9272881 9273009 -114803163 - RSINE1 SINE B4 -38 127 4 4 655 290 226 118 73 chr9 9273177 9273287 -114802885 - PB1D10 SINE Alu -1 116 2 4 655 382 274 0 0 chr9 9273312 9273396 -114802776 + B3 SINE B2 1 84 -132 4 655 251 250 0 18 chr9 9273933 9273990 -114802182 + B1F SINE Alu 6 61 -88 4 655 196 77 25 25 chr9 9274582 9274622 -114801550 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 4 655 21 57 0 0 chr9 9274625 9274660 -114801512 + AT_rich Low_complexity Low_complexity 1 35 0 4 655 386 175 45 39 chr9 9274715 9274893 -114801279 + (TA)n Simple_repeat Simple_repeat 1 179 0 4 655 470 263 110 16 chr9 9274904 9275091 -114801081 + B3A SINE B2 1 205 -11 4 655 318 213 19 105 chr9 9275473 9275504 -114800668 - RMER15 LTR ERVL -416 159 137 4 655 1632 186 14 65 chr9 9275504 9275936 -114800236 + RMER17C LTR ERVK 1 410 0 4 655 318 213 19 105 chr9 9275936 9276009 -114800163 - RMER15 LTR ERVL -439 136 64 4 655 848 131 169 7 chr9 9276261 9276415 -114799757 - B2_Mm2 SINE B2 -14 181 3 4 655 831 247 134 28 chr9 9276593 9276884 -114799288 + L1MB7 LINE L1 5810 6131 -53 4 655 539 306 68 48 chr9 9276895 9277101 -114799071 + B3 SINE B2 4 213 -3 4 655 639 294 15 49 chr9 9277349 9277553 -114798619 - B3 SINE B2 0 216 20 4 655 534 31 0 0 chr9 9277564 9277628 -114798544 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 655 1155 122 0 27 chr9 9277730 9277916 -114798256 + RLTR19 LTR ERVK 1 181 -318 4 655 189 0 0 0 chr9 9277916 9277937 -114798235 + (T)n Simple_repeat Simple_repeat 1 21 0 5 655 1339 20 0 0 chr9 9277937 9278084 -114798088 - B1_Mm SINE Alu 0 147 1 5 655 30410 128 13 16 chr9 9278106 9283603 -114792569 + L1VL4 LINE L1 272 5770 -113 5 655 559 67 0 0 chr9 9283601 9283676 -114792496 + L1_Mus2 LINE L1 5723 5797 -769 5 655 1117 95 7 0 chr9 9283676 9283823 -114792349 + B1_Mus1 SINE Alu 1 148 0 5 655 233 279 0 0 chr9 9283825 9283904 -114792268 + A-rich Low_complexity Low_complexity 1 79 0 5 655 18727 124 14 23 chr9 9283904 9286205 -114789967 + L1_Mus2 LINE L1 2913 5208 -675 5 655 1806 140 9 67 chr9 9286205 9286535 -114789637 + L1Md_F2 LINE L1 6270 6580 -2 5 655 18727 115 14 7 chr9 9286535 9287901 -114788271 + L1_Mus2 LINE L1 5209 6566 0 5 655 858 144 6 32 chr9 9287923 9288081 -114788091 + RLTR19A LTR ERVK 188 341 -155 5 655 811 224 44 6 chr9 9288104 9288284 -114787888 + RLTR19A LTR ERVK 313 499 0 5 655 586 229 76 0 chr9 9289204 9289322 -114786850 - ID_B1 SINE B4 -16 208 82 5 655 21 57 0 0 chr9 9289433 9289468 -114786704 + AT_rich Low_complexity Low_complexity 1 35 0 5 655 468 336 0 0 chr9 9289476 9289625 -114786547 - B1F1 SINE Alu 0 149 1 5 655 278 268 101 7 chr9 9290133 9290176 -114785996 + L1MA9 LINE L1 6114 6156 -135 5 655 420 20 0 0 chr9 9290176 9290225 -114785947 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 655 286 223 45 2 chr9 9290225 9290320 -114785852 + L1MA9 LINE L1 6157 6273 -39 5 655 309 263 0 0 chr9 9290387 9290463 -114785709 + RMER15 LTR ERVL 392 467 -108 5 655 234 174 0 0 chr9 9291482 9291528 -114784644 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 655 447 212 0 0 chr9 9291548 9291628 -114784544 + B1_Mur1 SINE Alu 59 138 -11 5 655 31 58 0 0 chr9 9291854 9291906 -114784266 + AT_rich Low_complexity Low_complexity 1 52 0 5 655 605 276 5 114 chr9 9291921 9291938 -114784234 - RSINE1 SINE B4 0 165 149 5 655 483 18 0 0 chr9 9291938 9291994 -114784178 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 655 605 276 5 114 chr9 9291994 9292160 -114784012 - RSINE1 SINE B4 -17 148 2 5 655 3884 35 9 2 chr9 9292714 9293147 -114783025 - RLTR10C LTR ERVK 0 436 1 5 655 45412 17 0 10 chr9 9293147 9298230 -114777942 - MMERVK10C-int LTR ERVK 0 7581 2552 5 655 367 111 0 0 chr9 9298236 9298299 -114777873 - MMERVK10C-int LTR ERVK -5634 1947 1885 5 655 286 175 0 17 chr9 9298304 9298362 -114777810 - MMERVK10C-int LTR ERVK -4261 1145 1089 5 655 646 264 150 69 chr9 9298349 9298735 -114777437 - MMERVK10C-int LTR ERVK -4820 2424 2079 5 655 959 143 4 177 chr9 9298825 9299096 -114777076 - MMERVK10C-int LTR ERVK -6629 952 729 5 655 2837 55 0 0 chr9 9299094 9299437 -114776735 - MMERVK10C-int LTR ERVK -7238 343 1 5 655 3607 32 4 130 chr9 9299437 9299936 -114776236 - RLTR10C LTR ERVK 0 436 1 5 655 247 357 93 0 chr9 9300270 9300410 -114775762 - MLT1A0 LTR MaLR 0 365 213 5 655 3427 247 48 77 chr9 9300463 9301600 -114774572 + RLTR25A LTR ERVK 1 1103 0 5 655 533 248 38 69 chr9 9301600 9301742 -114774430 - ID_B1 SINE B4 -29 195 59 5 655 289 328 33 8 chr9 9302462 9302582 -114773590 - MER110A LTR ERV1 0 468 346 5 655 1609 58 21 0 chr9 9302681 9302869 -114773303 - B2_Mm1t SINE B2 0 193 2 5 655 271 297 6 11 chr9 9303654 9303769 -114772403 + B3A SINE B2 2 149 -49 5 655 441 122 0 0 chr9 9303781 9303855 -114772317 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 655 775 280 46 0 chr9 9303892 9304067 -114772105 + ID_B1 SINE B4 27 209 -15 5 655 1498 172 91 9 chr9 9304071 9304388 -114771784 - RLTR9D LTR ERVK -12 391 1 5 655 419 83 40 40 chr9 9304389 9304464 -114771708 - ETnERV2-int LTR ERVK -2 7404 7330 5 81 12820 157 7 29 chr9 9304677 9306751 -114769421 - ETnERV2-int LTR ERVK -984 6422 4394 5 656 1609 21 15 65 chr9 9306752 9306951 -114769221 + B2_Mm1a SINE B2 2 190 -3 5 656 386 93 0 0 chr9 9306951 9307005 -114769167 + ORR1A4 LTR MaLR 276 329 0 5 656 241 235 0 0 chr9 9307016 9307067 -114769105 + Lx8 LINE L1 6667 6717 -756 5 656 4682 307 56 56 chr9 9307159 9308654 -114767518 - ETnERV2-int LTR ERVK -2565 3602 2110 5 656 2183 132 0 16 chr9 9308654 9308970 -114767202 + RLTR10E LTR ERVK 1 311 0 5 656 5764 262 35 34 chr9 9308970 9311126 -114765046 - ETnERV2-int LTR ERVK -4058 2109 4 5 656 2199 136 69 8 chr9 9311128 9311505 -114764667 - RLTR9D LTR ERVK -3 400 1 5 656 195 114 0 0 chr9 9311689 9311724 -114764448 + (CAT)n Simple_repeat Simple_repeat 2 36 0 5 656 233 171 153 28 chr9 9311890 9311962 -114764210 - HAL1 LINE L1 -99 2408 2328 5 656 209 309 0 0 chr9 9311966 9312021 -114764151 + C-rich Low_complexity Low_complexity 2 56 0 5 656 228 264 0 100 chr9 9312023 9312103 -114764069 - B1_Mur1 SINE Alu -5 144 73 5 656 223 164 0 32 chr9 9312114 9312177 -114763995 + CT-rich Low_complexity Low_complexity 5 65 0 5 656 3892 36 0 93 chr9 9312798 9313322 -114762850 - IAPLTR2_Mm LTR ERVK 0 475 1 5 656 315 280 13 0 chr9 9313678 9313753 -114762419 + ID_B1 SINE B4 135 210 -14 5 656 258 105 0 0 chr9 9313757 9313795 -114762377 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 656 259 99 11 69 chr9 9313802 9313889 -114762283 + (CAAA)n Simple_repeat Simple_repeat 1 82 0 5 656 448 260 83 39 chr9 9314015 9314171 -114762001 - RSINE1 SINE B4 0 165 3 5 656 2947 198 68 14 chr9 9314345 9314870 -114761302 + Lx5 LINE L1 6427 6962 -88 5 656 185 0 40 0 chr9 9314870 9314895 -114761277 + (GGGAA)n Simple_repeat Simple_repeat 3 28 0 5 656 2947 198 68 14 chr9 9314895 9314958 -114761214 + Lx5 LINE L1 6963 7047 -3 5 656 7026 44 10 7 chr9 9315279 9316085 -114760087 - RLTR13C2 LTR ERVK 0 808 1 5 656 940 216 48 24 chr9 9316895 9317107 -114759065 - MTC LTR MaLR -14 407 200 5 656 805 96 146 43 chr9 9317105 9317269 -114758903 - B2_Mm2 SINE B2 -10 185 5 5 656 935 221 5 5 chr9 9317262 9317453 -114758719 - MTC LTR MaLR -230 191 1 5 656 5054 203 26 132 chr9 9317453 9317666 -114758506 - MTC-int LTR MaLR 0 1258 1061 5 656 243 0 0 0 chr9 9317666 9317693 -114758479 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 656 5054 203 26 132 chr9 9317693 9318885 -114757287 - MTC-int LTR MaLR -198 1060 2 5 656 1410 201 14 18 chr9 9318886 9319164 -114757008 - MTC LTR MaLR -2 419 143 5 656 422 253 79 59 chr9 9319184 9319353 -114756819 + MTEa LTR MaLR 156 351 -28 5 656 412 289 49 8 chr9 9319557 9319679 -114756493 + RSINE1 SINE B4 3 129 -36 5 656 1511 175 43 110 chr9 9319761 9320143 -114756029 - ORR1A4 LTR MaLR -13 371 1 5 656 875 36 9 0 chr9 9320164 9320275 -114755897 + (GAA)n Simple_repeat Simple_repeat 1 112 0 5 656 939 284 26 13 chr9 9320334 9320562 -114755610 - B4 SINE B4 -60 232 2 5 656 1049 162 130 10 chr9 9321067 9321267 -114754905 - URR1A DNA MER1_type 0 226 3 5 656 254 120 0 57 chr9 9321459 9321512 -114754660 + A-rich Low_complexity Low_complexity 1 50 0 5 656 383 195 37 0 chr9 9321800 9321882 -114754290 - B1_Mus2 SINE Alu 0 147 63 5 656 923 128 0 0 chr9 9321879 9322012 -114754160 + B1_Mus1 SINE Alu 8 140 -8 5 656 315 0 0 0 chr9 9322012 9322047 -114754125 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 656 555 280 53 13 chr9 9322144 9322296 -114753876 + RSINE1 SINE B4 6 163 -2 5 656 214 87 43 0 chr9 9322296 9322342 -114753830 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 656 1032 140 0 6 chr9 9322962 9323127 -114753045 + MYSERV16_I-int LTR ERVK 209 372 -1954 5 656 3242 187 50 13 chr9 9323123 9323800 -114752372 + MYSERV16_I-int LTR ERVK 1618 2319 -7 5 656 2819 158 4 11 chr9 9323807 9324261 -114751911 + RLTR20A LTR ERVK 1 451 -90 5 656 374 151 14 0 chr9 9324359 9324432 -114751740 + (TA)n Simple_repeat Simple_repeat 1 74 0 5 656 24 67 0 0 chr9 9324546 9324591 -114751581 + AT_rich Low_complexity Low_complexity 1 45 0 5 656 369 245 70 20 chr9 9324595 9324695 -114751477 - RSINE1 SINE B4 -6 159 55 5 656 4536 135 53 16 chr9 9324718 9324748 -114751424 - Lx2 LINE L1 -3 6994 6952 5 656 2726 115 13 2 chr9 9324748 9325141 -114751031 - L1_Mus3 LINE L1 -3 6635 6239 5 656 4536 135 53 16 chr9 9325141 9325850 -114750322 - Lx2 LINE L1 -46 6951 6229 5 656 243 189 0 0 chr9 9325852 9325889 -114750283 - RLTR10A LTR ERVK 0 411 375 5 656 6249 75 0 20 chr9 9325892 9326741 -114749431 + L1Md_F2 LINE L1 265 1096 -5426 5 656 32318 72 0 0 chr9 9326736 9330936 -114745236 + L1Md_F2 LINE L1 1390 5589 -297 5 656 8312 63 2 2 chr9 9330936 9331931 -114744241 + L1Md_F2 LINE L1 5590 6584 -1 5 656 2055 68 23 9 chr9 9331932 9332282 -114743890 - RLTR10A LTR ERVK -22 287 1 5 656 4975 93 21 13 chr9 9332282 9333021 -114743151 - RLTR10-int LTR ERVK -1 1986 1288 5 656 1611 100 100 0 chr9 9333025 9333276 -114742896 - RLTR10-int LTR ERVK -1260 5282 5007 5 656 653 184 68 7 chr9 9333276 9333424 -114742748 - RLTR10-int LTR ERVK -6039 503 347 5 656 766 140 216 33 chr9 9333418 9333715 -114742457 - RLTR10-int LTR ERVK -1381 606 22 5 656 2028 126 100 16 chr9 9333717 9334096 -114742076 - RLTR10A LTR ERVK 0 411 1 5 656 3887 112 10 0 chr9 9334101 9334708 -114741464 - Lx2 LINE L1 -771 6226 5614 5 656 4453 180 7 10 chr9 9334709 9335612 -114740560 + Lx2 LINE L1 4700 5599 -278 5 656 443 238 45 45 chr9 9335662 9335772 -114740400 - B1F2 SINE Alu 0 149 40 5 656 250 242 0 32 chr9 9335774 9335868 -114740304 + CT-rich Low_complexity Low_complexity 4 94 0 5 656 194 128 0 25 chr9 9336043 9336083 -114740089 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 656 710 274 42 65 chr9 9337011 9337226 -114738946 - B3A SINE B2 -2 214 5 5 656 632 93 10 0 chr9 9337616 9337713 -114738459 + (TCC)n Simple_repeat Simple_repeat 3 100 0 5 656 701 224 30 0 chr9 9337738 9337872 -114738300 - B1_Mur3 SINE Alu -9 140 3 5 656 459 0 0 0 chr9 9337939 9337990 -114738182 + (TTTCC)n Simple_repeat Simple_repeat 1 51 0 5 656 1212 106 0 0 chr9 9337991 9338170 -114738002 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 5 656 248 131 0 21 chr9 9338202 9338249 -114737923 + CT-rich Low_complexity Low_complexity 3 48 0 5 656 404 296 119 15 chr9 9338270 9338472 -114737700 + Tigger7 DNA MER2_type 387 609 -1882 5 656 637 264 76 0 chr9 9338504 9338701 -114737471 + ID_B1 SINE B4 5 216 -8 5 656 692 217 229 0 chr9 9338710 9338876 -114737296 + B3 SINE B2 3 206 -10 5 656 536 259 9 0 chr9 9339310 9339426 -114736746 - PB1D7 SINE Alu -1 119 3 5 656 573 15 0 0 chr9 9339939 9340005 -114736167 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 656 456 279 42 67 chr9 9340005 9340159 -114736013 - B3A SINE B2 -47 151 1 5 656 206 98 14 116 chr9 9340590 9340659 -114735513 + A-rich Low_complexity Low_complexity 2 63 0 5 656 564 318 113 6 chr9 9340680 9340857 -114735315 + ID_B1 SINE B4 24 219 -5 5 656 216 231 19 0 chr9 9340882 9340934 -114735238 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 5 656 339 354 78 98 chr9 9340937 9341397 -114734775 + Charlie13a DNA Charlie 712 1162 -352 5 656 330 289 0 0 chr9 9341414 9341490 -114734682 + ID_B1 SINE B4 95 170 -54 5 656 1152 42 14 7 chr9 9341755 9341900 -114734272 + B1_Mus2 SINE Alu 2 147 0 5 656 586 277 46 0 chr9 9342124 9342254 -114733918 + RSINE1 SINE B4 1 136 -29 5 656 186 71 0 0 chr9 9342258 9342286 -114733886 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 656 198 383 62 0 chr9 9343644 9343725 -114732447 + L2b LINE L2 3290 3375 0 5 656 1220 104 22 0 chr9 9343813 9343995 -114732177 + B2_Mm1t SINE B2 2 187 -6 5 656 480 77 0 0 chr9 9344008 9344073 -114732099 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 5 656 40 21 0 0 chr9 9344146 9344193 -114731979 + AT_rich Low_complexity Low_complexity 1 47 0 5 656 466 241 36 27 chr9 9344260 9344371 -114731801 + MTEb LTR MaLR 1 112 -267 5 656 5183 155 33 53 chr9 9344415 9346273 -114729899 + L1Md_F LINE L1 123 1958 -1859 5 656 5150 136 13 4 chr9 9346283 9347146 -114729026 + L1_Mus3 LINE L1 5773 6638 0 6 656 369 0 0 0 chr9 9347167 9347208 -114728964 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 656 270 0 0 0 chr9 9347560 9347590 -114728582 + (TAA)n Simple_repeat Simple_repeat 1 30 0 6 656 2108 195 21 89 chr9 9347609 9348579 -114727593 + Lx5 LINE L1 922 1825 -4052 6 656 1860 238 63 101 chr9 9348581 9349212 -114726960 - RMER19C LTR ERVK 0 611 5 6 656 12949 169 190 25 chr9 9349212 9351153 -114725019 + Lx5 LINE L1 1939 4285 -1592 6 656 228 35 0 0 chr9 9351153 9351182 -114724990 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 656 12949 169 190 25 chr9 9351182 9352031 -114724141 + Lx5 LINE L1 4286 5148 -729 6 656 1380 238 116 129 chr9 9352031 9352650 -114723522 - RMER19C LTR ERVK 0 611 1 6 656 12949 197 124 19 chr9 9352650 9354309 -114721863 + Lx5 LINE L1 5149 7048 -2 6 656 393 39 0 0 chr9 9354335 9354386 -114721786 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 6 656 465 217 90 67 chr9 9354395 9354573 -114721599 + MTEb LTR MaLR 185 366 -13 5 656 326 331 124 7 chr9 9354949 9355086 -114721086 + MLT1F1 LTR MaLR 417 569 0 6 656 218 233 16 32 chr9 9355320 9355382 -114720790 + CT-rich Low_complexity Low_complexity 4 64 0 6 656 233 151 0 19 chr9 9356286 9356340 -114719832 + CT-rich Low_complexity Low_complexity 1 53 0 6 656 239 289 13 13 chr9 9356353 9356430 -114719742 + CT-rich Low_complexity Low_complexity 2 78 0 6 656 191 114 29 0 chr9 9356439 9356474 -114719698 + (TTCTC)n Simple_repeat Simple_repeat 4 39 0 6 656 613 98 29 0 chr9 9356482 9356584 -114719588 + (TTCC)n Simple_repeat Simple_repeat 1 105 0 6 656 456 322 49 33 chr9 9357214 9357397 -114718775 + MLT1F1 LTR MaLR 282 467 -102 6 656 373 289 11 0 chr9 9358393 9358483 -114717689 + ID_B1 SINE B4 3 93 -131 6 656 1207 150 25 20 chr9 9358471 9358675 -114717497 + ORR1A2 LTR MaLR 75 279 -48 6 656 464 205 50 63 chr9 9358659 9358800 -114717372 - B1_Mur3 SINE Alu -3 146 11 6 656 269 289 56 56 chr9 9358693 9358836 -114717336 - MT2B LTR ERVL -337 264 122 6 656 531 252 34 37 chr9 9358993 9359174 -114716998 - RLTR11A2 LTR ERVK -33 495 284 6 656 596 260 45 113 chr9 9359258 9359549 -114716623 - RLTR11A2 LTR ERVK -254 273 3 6 656 985 90 0 0 chr9 9359705 9359839 -114716333 - B1_Mus1 SINE Alu -1 147 14 6 656 496 255 51 82 chr9 9359839 9359859 -114716313 - B4 SINE B4 -63 225 77 6 656 4694 167 76 42 chr9 9360392 9361023 -114715149 - L1_Mur2 LINE L1 -3463 2417 1761 6 656 3567 18 0 0 chr9 9361023 9361419 -114714753 + MTA_Mm LTR MaLR 1 396 0 6 656 4694 167 76 42 chr9 9361419 9361527 -114714645 - L1_Mur2 LINE L1 -4120 1760 1657 6 656 3294 188 67 9 chr9 9361527 9362181 -114713991 - RLTR17 LTR ERVK 0 692 1 6 656 4694 170 88 69 chr9 9362181 9362914 -114713258 - L1_Mur2 LINE L1 -4224 1656 905 6 656 234 308 103 29 chr9 9362939 9363113 -114713059 - L1_Mur2 LINE L1 -7430 298 112 6 656 664 222 36 156 chr9 9363113 9363337 -114712835 - URR1A DNA MER1_type 0 226 30 6 656 387 292 24 67 chr9 9363355 9363564 -114712608 - L1_Mur3 LINE L1 -7146 566 381 6 656 830 183 0 0 chr9 9363733 9363864 -114712308 + B1_Mur1 SINE Alu 13 143 -6 6 656 360 152 0 0 chr9 9363867 9363933 -114712239 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 6 656 466 273 70 30 chr9 9364627 9364827 -114711345 - B3 SINE B2 -6 210 3 6 656 691 267 11 32 chr9 9364842 9365028 -114711144 - B3A SINE B2 -16 182 1 6 656 472 219 32 16 chr9 9365719 9365844 -114710328 - Lx2 LINE L1 0 6997 6871 6 656 1258 168 8 0 chr9 9365839 9366095 -114710077 - Lx2 LINE L1 -838 6159 5902 6 656 7351 95 8 5 chr9 9366092 9367913 -114708259 - L1VL4 LINE L1 -1571 1988 162 6 656 307 293 0 0 chr9 9368589 9368664 -114707508 - MTEa LTR MaLR -4 375 301 6 656 181 363 116 7 chr9 9368964 9369111 -114707061 - L2c LINE L2 -294 3093 2931 6 656 1118 229 42 12 chr9 9369128 9369582 -114706590 + RLTR16 LTR ERVK 1 505 0 6 656 616 245 98 39 chr9 9369883 9370087 -114706085 + B3 SINE B2 1 216 0 6 656 705 252 113 17 chr9 9370454 9370684 -114705488 - Lx8 LINE L1 -173 7300 7049 6 656 312 357 44 31 chr9 9371051 9371210 -114704962 + MLT2B2 LTR ERVL 108 268 -247 6 656 483 48 0 0 chr9 9371249 9371311 -114704861 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 656 258 32 0 0 chr9 9371449 9371480 -114704692 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 6 656 482 0 17 0 chr9 9371480 9371537 -114704635 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 6 656 1321 18 6 6 chr9 9371560 9371725 -114704447 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 6 656 277 297 23 99 chr9 9371725 9371856 -114704316 - ID_B1 SINE B4 -18 206 86 6 656 545 241 0 74 chr9 9371739 9371860 -114704312 - B1_Mus2 SINE Alu -35 112 1 6 656 266 300 56 125 chr9 9371953 9372113 -114704059 + MTEb LTR MaLR 1 149 -230 6 656 2280 232 83 26 chr9 9373785 9374474 -114701698 + RMER1C Other Other 434 1161 -181 6 656 391 306 6 40 chr9 9374529 9374706 -114701466 + GA-rich Low_complexity Low_complexity 1 171 0 6 656 183 239 34 0 chr9 9374729 9374817 -114701355 + GA-rich Low_complexity Low_complexity 6 96 0 6 656 1210 61 0 0 chr9 9374986 9375133 -114701039 + B1_Mm SINE Alu 1 147 0 6 656 351 0 0 0 chr9 9375645 9375684 -114700488 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 656 570 197 64 24 chr9 9375685 9375810 -114700362 - B1_Mur1 SINE Alu -17 132 3 6 656 411 324 28 0 chr9 9375940 9376085 -114700087 + B3A SINE B2 27 175 -23 6 656 456 35 0 0 chr9 9376411 9376469 -114699703 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 656 187 305 132 31 chr9 9377312 9377471 -114698701 + MIRb SINE MIR 44 218 -50 6 656 871 228 29 5 chr9 9377483 9377690 -114698482 + B3 SINE B2 1 212 -4 6 656 185 370 68 7 chr9 9378210 9378357 -114697815 - MIR3 SINE MIR -18 190 35 6 656 417 274 25 17 chr9 9378590 9378709 -114697463 - B1F SINE Alu -29 120 1 6 656 400 342 6 44 chr9 9378857 9379016 -114697156 + MER5A1 DNA MER1_type 11 163 -3 6 656 355 206 16 0 chr9 9379025 9379088 -114697084 - ID4 SINE ID -5 78 15 6 656 374 331 28 35 chr9 9381940 9382084 -114694088 - B4 SINE B4 -1 291 149 6 656 984 278 13 89 chr9 9382117 9382433 -114693739 + ORR1E LTR MaLR 1 292 -67 6 656 21 0 0 0 chr9 9382478 9382499 -114693673 + AT_rich Low_complexity Low_complexity 1 21 0 6 656 429 308 75 0 chr9 9382626 9382746 -114693426 + ID_B1 SINE B4 82 210 -14 6 656 250 194 132 15 chr9 9382749 9382817 -114693355 + ID2 SINE ID 4 79 -4 6 656 3687 36 34 11 chr9 9382921 9383392 -114692780 + RLTR45 LTR ERVK 1 482 0 6 656 24760 37 25 5 chr9 9383392 9386540 -114689632 + RLTR45-int LTR ERVK 1 3211 -4033 6 656 13856 40 20 17 chr9 9386513 9387878 -114688294 + RLTR45-int LTR ERVK 3380 4743 -2501 6 656 279 0 0 0 chr9 9387878 9387909 -114688263 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 6 656 13856 40 20 17 chr9 9387909 9388448 -114687724 + RLTR45-int LTR ERVK 4744 5289 -1955 6 656 251 209 206 15 chr9 9388448 9388516 -114687656 + RLTR6_Mm LTR ERV1 1 81 -573 6 656 1913 131 254 31 chr9 9388556 9389004 -114687168 + RLTR6_Mm LTR ERV1 37 584 -70 6 656 10339 35 30 1 chr9 9389004 9390906 -114685266 + RLTR45-int LTR ERVK 5287 7244 0 6 656 3884 49 30 11 chr9 9390906 9391379 -114684793 + RLTR45 LTR ERVK 1 482 0 6 656 216 97 0 0 chr9 9391549 9391580 -114684592 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 656 920 312 58 7 chr9 9391614 9391888 -114684284 - ORR1E LTR MaLR -66 293 6 6 656 1132 158 11 32 chr9 9392095 9392284 -114683888 - B2_Mm2 SINE B2 -7 188 4 6 656 58 28 0 0 chr9 9392295 9392367 -114683805 + AT_rich Low_complexity Low_complexity 1 72 0 6 656 770 297 25 13 chr9 9392500 9392739 -114683433 - RMER15 LTR ERVL -55 520 279 6 656 417 300 113 16 chr9 9393403 9393650 -114682522 - L1MB7 LINE L1 -43 6141 5871 6 656 2724 98 12 17 chr9 9394252 9394658 -114681514 + RLTR9E LTR ERVK 6 409 0 6 656 478 286 0 28 chr9 9394665 9394809 -114681363 + RNLTR23 LTR ERVK 503 642 0 6 656 1169 280 3 28 chr9 9394990 9395317 -114680855 + RNERVK23-int LTR ERVK 171 489 -7728 6 656 1566 44 11 0 chr9 9395351 9395532 -114680640 - B2_Mm1t SINE B2 -9 184 2 6 656 3496 48 2 0 chr9 9396022 9396417 -114679755 + MTA_Mm LTR MaLR 1 396 0 6 656 3819 130 32 113 chr9 9396417 9396810 -114679362 + MTA_Mm-int LTR MaLR 3 392 -866 6 656 1086 97 7 27 chr9 9396810 9396959 -114679213 + B1_Mus1 SINE Alu 2 147 -1 6 656 3819 130 32 113 chr9 9396959 9397371 -114678801 + MTA_Mm-int LTR MaLR 393 743 -515 6 656 36403 72 1 14 chr9 9397381 9403579 -114672593 - L1Md_F2 LINE L1 -2 6580 465 6 656 2968 72 60 2 chr9 9403584 9404014 -114672158 + MTA_Mm-int LTR MaLR 644 1098 0 6 656 3172 89 2 2 chr9 9404014 9404410 -114671762 + MTA_Mm LTR MaLR 1 396 0 6 656 201 158 0 0 chr9 9404448 9404486 -114671686 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 656 802 285 17 17 chr9 9404676 9404915 -114671257 + RNERVK23-int LTR ERVK 1272 1510 -6707 6 656 246 221 49 49 chr9 9404922 9405003 -114671169 - L1Md_F LINE L1 -5766 753 673 6 656 28752 139 32 22 chr9 9405102 9409108 -114667064 + L1_Mus2 LINE L1 423 4518 -1365 6 656 4361 85 2 7 chr9 9409108 9409663 -114666509 + L1_Mus1 LINE L1 6016 6567 0 6 656 28752 119 10 21 chr9 9409663 9411781 -114664391 + L1_Mus2 LINE L1 4519 6566 0 6 656 29 28 0 0 chr9 9411900 9411936 -114664236 + AT_rich Low_complexity Low_complexity 1 36 0 6 656 275 246 18 0 chr9 9411992 9412049 -114664123 + PB1D10 SINE Alu 29 86 -31 6 656 255 61 0 0 chr9 9412073 9412106 -114664066 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 656 221 178 74 44 chr9 9412179 9412314 -114663858 + (TCTA)n Simple_repeat Simple_repeat 2 140 0 6 656 546 316 67 67 chr9 9412514 9412857 -114663315 + MTEb LTR MaLR 1 343 -36 6 656 1366 186 216 0 chr9 9412875 9413213 -114662959 - MTD LTR MaLR -8 411 1 6 656 1426 150 10 65 chr9 9413709 9414001 -114662171 + Lx LINE L1 6372 6647 -7 6 656 360 77 0 0 chr9 9414001 9414053 -114662119 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 656 329 295 98 28 chr9 9414265 9414408 -114661764 - RMER5 LTR ERV1 0 534 382 6 656 8063 239 52 23 chr9 9414452 9416421 -114659751 + RodERV21-int LTR ERV1 688 2714 -2277 6 656 302 125 0 0 chr9 9416886 9416934 -114659238 + 7SLRNA srpRNA srpRNA 161 208 -106 6 656 1001 131 0 14 chr9 9417026 9417173 -114658999 + RMER17C-int LTR ERVK 3094 3238 0 6 656 1856 153 9 108 chr9 9417173 9417372 -114658800 + RMER17C LTR ERVK 1 184 -226 6 656 585 0 0 0 chr9 9417372 9417437 -114658735 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 656 1856 153 9 108 chr9 9417437 9417692 -114658480 + RMER17C LTR ERVK 185 410 0 6 656 4813 79 0 0 chr9 9417876 9418468 -114657704 - L1Md_T LINE L1 -1 6581 5990 6 656 3613 22 0 0 chr9 9418468 9418959 -114657213 + L1Md_T LINE L1 5478 5968 -614 6 656 1013 300 53 78 chr9 9419543 9420093 -114656079 + RodERV21-int LTR ERV1 3258 3793 -1198 6 656 1191 79 0 0 chr9 9420094 9420234 -114655938 + B1_Mm SINE Alu 1 140 -7 6 656 317 47 30 30 chr9 9420240 9420306 -114655866 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 6 656 219 36 0 0 chr9 9420321 9420349 -114655823 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 7 656 3829 243 58 48 chr9 9420360 9421371 -114654801 + RodERV21-int LTR ERV1 3787 4807 -184 6 656 376 294 11 11 chr9 9421379 9421472 -114654700 + RMER4B LTR ERVK 349 441 -144 7 656 8011 67 1 3 chr9 9422021 9423042 -114653130 - L1Md_F2 LINE L1 -13 6569 5573 7 656 23 33 0 0 chr9 9423199 9423229 -114652943 + AT_rich Low_complexity Low_complexity 1 30 0 7 656 246 254 85 85 chr9 9424334 9424412 -114651760 - RMER12 LTR ERVK -474 848 773 7 656 459 0 0 0 chr9 9424412 9424463 -114651709 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 656 246 254 85 85 chr9 9424463 9424513 -114651659 - RMER12 LTR ERVK -550 772 720 7 656 598 335 47 66 chr9 9425241 9425621 -114650551 - MTEa LTR MaLR -4 375 3 7 656 3021 50 6 3 chr9 9425624 9425968 -114650204 + IAPLTR4 LTR ERVK 1 345 0 7 656 237 346 62 36 chr9 9426294 9426438 -114649734 + MIRc SINE MIR 3 144 -64 7 656 586 252 54 54 chr9 9426633 9426801 -114649371 + ORR1B1 LTR MaLR 41 208 -186 7 656 336 138 0 0 chr9 9427219 9427284 -114648888 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 656 4275 166 70 10 chr9 9427372 9428529 -114647643 + Lx2 LINE L1 5175 6392 -605 7 656 2896 145 63 10 chr9 9428529 9429024 -114647148 + Lx2 LINE L1 6478 6998 -2 7 656 24 32 0 0 chr9 9429027 9429058 -114647114 + AT_rich Low_complexity Low_complexity 1 31 0 7 656 228 291 174 0 chr9 9429847 9429933 -114646239 - MLT1F2 LTR MaLR -458 102 2 7 656 212 340 0 0 chr9 9430174 9430227 -114645945 + polypyrimidine Low_complexity Low_complexity 4 56 0 7 656 508 331 12 31 chr9 9430234 9430396 -114645776 - RSINE1 SINE B4 -2 163 5 7 656 1121 118 6 0 chr9 9430480 9430658 -114645514 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 7 656 379 155 12 12 chr9 9430688 9430773 -114645399 + CT-rich Low_complexity Low_complexity 3 87 0 7 656 254 278 9 61 chr9 9430914 9431029 -114645143 + L1_Mus2 LINE L1 155 263 -6353 7 656 18223 129 46 5 chr9 9431006 9434526 -114641646 + L1_Mus2 LINE L1 675 4346 -1537 7 10 10199 103 7 11 chr9 9435076 9437319 -114638853 + L1_Mus2 LINE L1 4331 6566 0 7 657 740 160 0 67 chr9 9437351 9437485 -114638687 - B1_Mur3 SINE Alu -8 141 17 7 657 1130 116 0 0 chr9 9437502 9437648 -114638524 - B1_Mus2 SINE Alu 0 147 2 7 657 32078 78 4 5 chr9 9437809 9442825 -114633347 + L1Md_F2 LINE L1 578 5586 -297 7 657 8481 52 1 6 chr9 9442825 9443818 -114632354 + L1Md_F2 LINE L1 5587 6574 -8 7 657 1623 32 0 0 chr9 9443822 9444008 -114632164 + B2_Mm1a SINE B2 2 187 -6 7 657 26 0 0 0 chr9 9444008 9444034 -114632138 + AT_rich Low_complexity Low_complexity 1 26 0 7 657 734 302 24 34 chr9 9444830 9445036 -114631136 + B4 SINE B4 70 273 -19 7 657 532 288 174 57 chr9 9445430 9445728 -114630444 - RLTR31B_Mm LTR ERVK 0 557 225 7 657 14791 103 13 6 chr9 9445728 9448916 -114627256 + L1VL4 LINE L1 69 3278 -281 7 657 1932 186 25 22 chr9 9448982 9449383 -114626789 + RLTR9D LTR ERVK 1 402 -1 7 657 578 248 63 66 chr9 9449389 9449708 -114626464 + RMER16-int LTR ERVK 3 320 -2994 7 657 537 44 0 0 chr9 9449708 9449776 -114626396 + (TAAAA)n Simple_repeat Simple_repeat 4 71 0 7 657 5828 182 85 48 chr9 9449776 9452312 -114623860 + RMER16-int LTR ERVK 726 3080 -2326 7 657 3877 161 21 18 chr9 9452302 9453191 -114622981 + RMER16-int LTR ERVK 5579 6425 -981 7 657 360 127 41 27 chr9 9453400 9453473 -114622699 + RMER16-int LTR ERVK 7331 7404 -2 7 657 2030 167 25 23 chr9 9453474 9453873 -114622299 + RLTR9D LTR ERVK 1 400 -3 7 657 3211 149 7 25 chr9 9453875 9454488 -114621684 + L1_Mur2 LINE L1 3679 4280 -1597 7 657 3988 143 41 13 chr9 9454508 9455194 -114620978 + Lx LINE L1 5945 6649 -5 7 657 1049 180 8 120 chr9 9455195 9455454 -114620718 - RLTR31B_Mm LTR ERVK -327 230 1 7 657 486 0 0 0 chr9 9456131 9456185 -114619987 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 657 270 247 77 13 chr9 9456194 9456272 -114619900 - B3A SINE B2 -16 182 100 7 657 285 54 0 0 chr9 9456272 9456309 -114619863 + L1_Mur2 LINE L1 2905 2941 -2936 7 657 1628 210 69 10 chr9 9456303 9456711 -114619461 - Lx7 LINE L1 -565 7131 6700 7 657 445 227 0 4 chr9 9456710 9456829 -114619343 - L1_Mur3 LINE L1 -133 5747 5601 7 657 1906 198 0 0 chr9 9456867 9457215 -114618957 - Lx6 LINE L1 -807 6653 6306 7 657 1474 237 51 17 chr9 9457217 9457685 -114618487 - Lx7 LINE L1 -1557 6139 5656 7 657 492 195 110 32 chr9 9457680 9457834 -114618338 + Lx7 LINE L1 6660 6825 -871 7 657 1729 175 51 0 chr9 9457835 9458167 -114618005 - Lx7 LINE L1 -243 5637 5289 7 657 637 195 64 12 chr9 9458201 9458372 -114617800 - Lx7 LINE L1 -1824 4056 3877 7 657 6773 105 5 1 chr9 9458394 9459671 -114616501 + L1_Mus2 LINE L1 4817 6096 -470 7 657 1345 151 58 20 chr9 9459671 9460077 -114616095 + RLTR13D1 LTR ERVK 1 740 -293 7 657 302 134 15 0 chr9 9460081 9460148 -114616024 - Lx7 LINE L1 -4137 1743 1676 7 657 594 263 38 0 chr9 9460149 9460282 -114615890 - B1_Mus2 SINE Alu -7 140 3 7 657 2951 201 74 16 chr9 9460285 9461336 -114614836 - Lx7 LINE L1 -4202 1678 559 7 657 29899 99 14 14 chr9 9461439 9467663 -114608509 - L1Md_F2 LINE L1 0 6582 359 7 657 277 360 8 26 chr9 9467923 9468040 -114608132 + ID_B1 SINE B4 87 201 -23 7 657 189 0 0 0 chr9 9468077 9468098 -114608074 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 7 657 33944 43 0 3 chr9 9468266 9473507 -114602665 + L1Md_T LINE L1 268 5589 -297 7 657 8509 32 0 0 chr9 9473507 9474503 -114601669 + L1Md_T LINE L1 5590 6585 0 7 657 359 379 14 14 chr9 9474524 9474666 -114601506 + RSINE1 SINE B4 4 145 -20 7 657 678 62 0 0 chr9 9474675 9474771 -114601401 + (CA)n Simple_repeat Simple_repeat 1 96 0 7 657 396 128 0 0 chr9 9474771 9474849 -114601323 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 657 201 74 0 0 chr9 9475092 9475119 -114601053 + (T)n Simple_repeat Simple_repeat 1 27 0 7 657 523 269 54 0 chr9 9476446 9476613 -114599559 - B3A SINE B2 -18 180 5 7 657 21 0 0 0 chr9 9476857 9476878 -114599294 + AT_rich Low_complexity Low_complexity 1 21 0 7 657 256 378 40 10 chr9 9477475 9477574 -114598598 + MLT1B LTR MaLR 214 315 -75 7 657 2503 269 53 29 chr9 9477606 9478510 -114597662 + RCHARR1 DNA MER1_type 48 973 -1 7 657 988 265 9 9 chr9 9479002 9479219 -114596953 + ID_B1 SINE B4 6 222 -2 7 657 236 250 90 11 chr9 9481732 9481821 -114594351 - Lx8 LINE L1 -1126 6347 6252 7 657 28593 107 48 5 chr9 9481809 9487960 -114588212 - L1Md_F2 LINE L1 0 6582 168 7 657 297 275 0 0 chr9 9487982 9488062 -114588110 - Lx8 LINE L1 -1207 6266 6187 7 657 1612 35 0 10 chr9 9488064 9488268 -114587904 + L1Md_F3 LINE L1 6367 6568 -16 7 657 28 0 0 0 chr9 9488272 9488300 -114587872 + AT_rich Low_complexity Low_complexity 1 28 0 7 657 229 231 179 0 chr9 9488894 9488972 -114587200 - RMER13A LTR ERVK -592 268 177 7 657 708 290 68 39 chr9 9489083 9489363 -114586809 - B4 SINE B4 -2 290 3 7 657 189 333 12 36 chr9 9489392 9489476 -114586696 - L3 LINE CR1 -2160 2329 2248 7 657 646 287 33 7 chr9 9490591 9490742 -114585430 + B3A SINE B2 13 167 -31 7 657 1872 137 53 53 chr9 9490790 9491113 -114585059 + ORR1A3 LTR MaLR 3 325 -1 7 657 4767 194 42 55 chr9 9491409 9492502 -114583670 + RLTR21 LTR ERVK 7 1085 -487 7 657 483 230 136 47 chr9 9492473 9492511 -114583661 + RMER12B LTR ERVK 1221 1260 -144 7 657 282 73 0 0 chr9 9492511 9492552 -114583620 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 657 483 230 136 47 chr9 9492552 9492682 -114583490 + RMER12B LTR ERVK 1261 1404 0 7 657 21 0 0 0 chr9 9492888 9492909 -114583263 + AT_rich Low_complexity Low_complexity 1 21 0 7 657 491 298 61 55 chr9 9492926 9493107 -114583065 - B3A SINE B2 -16 182 1 7 657 773 310 40 0 chr9 9494560 9494760 -114581412 - ID_B1 SINE B4 -8 216 9 7 657 732 294 161 12 chr9 9495291 9495546 -114580626 + MTD LTR MaLR 50 342 -77 7 657 7298 24 0 0 chr9 9495672 9496576 -114579596 - L1Md_T LINE L1 -1124 4759 3856 7 657 6941 14 0 0 chr9 9496576 9497406 -114578766 + L1Md_T LINE L1 4757 5586 -297 7 657 8956 9 0 0 chr9 9497406 9498402 -114577770 + L1Md_T LINE L1 5587 6582 0 7 657 569 305 30 51 chr9 9498561 9498758 -114577414 + ID_B1 SINE B4 6 198 -26 7 657 261 164 0 0 chr9 9498758 9498831 -114577341 + (CAA)n Simple_repeat Simple_repeat 3 75 0 7 657 3321 40 2 0 chr9 9499394 9499789 -114576383 + MTA_Mm LTR MaLR 1 396 0 7 657 807 84 0 0 chr9 9500055 9500174 -114575998 + L1_Mus1 LINE L1 6449 6567 0 1 657 4888 155 79 3 chr9 9500820 9501708 -114574464 - RMER17B LTR ERVK -3 955 1 2 657 237 65 0 0 chr9 9501717 9501748 -114574424 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 657 475 291 235 17 chr9 9501763 9502001 -114574171 - B4A SINE B4 -1 291 2 4 657 334 297 103 52 chr9 9502123 9502297 -114573875 + MTEa LTR MaLR 197 379 0 5 657 1156 178 28 14 chr9 9502333 9502549 -114573623 + URR1A DNA MER1_type 8 226 0 6 657 389 250 7 54 chr9 9502764 9502912 -114573260 - Charlie18a DNA MER1_type -124 218 78 7 657 363 376 89 13 chr9 9503244 9503481 -114572691 - LTR16D1 LTR ERVL -14 661 407 8 657 271 406 39 28 chr9 9503516 9503696 -114572476 - LTR16D1 LTR ERVL -343 308 127 8 657 884 248 175 68 chr9 9503835 9504172 -114572000 - ORR1D1 LTR MaLR -1 373 1 9 657 495 257 19 161 chr9 9504344 9504506 -114571666 - B1F2 SINE Alu -8 141 3 1 657 545 299 11 20 chr9 9504506 9504539 -114571633 - ID SINE ID -142 82 64 1 657 299 85 21 0 chr9 9505689 9505736 -114570436 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 1 657 323 274 43 59 chr9 9505751 9505937 -114570235 - L1MA9 LINE L1 -74 6238 6056 1 657 15687 106 13 4 chr9 9506120 9509366 -114566806 - L1_Mus1 LINE L1 0 6567 3291 1 657 890 123 52 38 chr9 9509359 9509603 -114566569 - L1VL1 LINE L1 -5350 1072 857 1 657 2154 181 15 0 chr9 9509602 9510056 -114566116 - L1_Mus1 LINE L1 -5411 1205 745 1 657 296 291 36 22 chr9 9510073 9510210 -114565962 - L1_Mus1 LINE L1 -5801 815 677 1 657 411 323 11 97 chr9 9510346 9510727 -114565445 - L1VL1 LINE L1 -6030 392 45 1 657 533 290 47 43 chr9 9510756 9511316 -114564856 - L1M2 LINE L1 -818 6184 5619 1 657 315 279 78 45 chr9 9511614 9511858 -114564314 - L1M4 LINE L1 -1748 4398 4147 1 657 368 256 136 37 chr9 9512028 9512300 -114563872 - L1M2 LINE L1 -4172 2677 2379 1 657 423 78 0 0 chr9 9512308 9512372 -114563800 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 657 442 0 35 0 chr9 9512383 9512441 -114563731 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2 657 233 301 166 31 chr9 9512488 9512711 -114563461 - MLT2B5 LTR ERVL -72 529 277 2 657 327 303 91 0 chr9 9512825 9512924 -114563248 - PB1D7 SINE Alu -12 108 1 2 657 1655 21 0 0 chr9 9513525 9513713 -114562459 - B2_Mm1a SINE B2 -4 189 2 2 657 1590 239 31 19 chr9 9513713 9514126 -114562046 + MTD LTR MaLR 1 418 -1 2 657 358 325 37 54 chr9 9515919 9516215 -114559957 - HERV16-int LTR ERVL -2221 2775 2485 2 657 1186 90 11 0 chr9 9516316 9516494 -114559678 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 657 663 103 0 0 chr9 9516921 9517018 -114559154 + (TA)n Simple_repeat Simple_repeat 2 98 0 2 657 608 207 6 30 chr9 9517025 9517194 -114558978 + Lx9 LINE L1 7479 7643 -1 2 657 520 342 6 32 chr9 9517307 9517464 -114558708 + RSINE1 SINE B4 1 153 -12 2 657 559 291 21 37 chr9 9518431 9518620 -114557552 - B3A SINE B2 -11 187 2 3 657 624 311 81 55 chr9 9519021 9519331 -114556841 + RMER20B LTR ERVK 54 371 -256 3 657 2623 96 8 37 chr9 9519541 9519942 -114556230 - RMER16 LTR ERVK -81 452 64 3 657 1784 139 40 0 chr9 9519966 9520267 -114555905 - RMER16-int LTR ERVK -4 5402 5090 3 657 1351 306 55 34 chr9 9520673 9521584 -114554588 - MuRRS4-int LTR ERV1 -1907 3156 2227 3 657 26438 87 9 3 chr9 9521604 9526253 -114549919 - L1Md_F2 LINE L1 0 6582 1909 3 657 1835 158 84 0 chr9 9526251 9526598 -114549574 - L1Md_F2 LINE L1 -5761 855 480 3 657 1512 146 23 4 chr9 9526598 9526859 -114549313 - L1VL1 LINE L1 -6156 266 1 3 657 1614 230 69 17 chr9 9526873 9527235 -114548937 - ORR1B1 LTR MaLR -2 392 12 3 657 343 329 51 32 chr9 9527446 9527603 -114548569 + MER5B DNA MER1_type 8 167 -11 3 657 2588 45 0 0 chr9 9527650 9527963 -114548209 - L1Md_T LINE L1 0 6582 6270 3 657 668 301 65 79 chr9 9528089 9528367 -114547805 + B4A SINE B4 2 275 -17 3 657 360 0 0 0 chr9 9528428 9528468 -114547704 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 657 325 247 25 0 chr9 9529128 9529209 -114546963 - MLT1B LTR MaLR -35 355 273 4 657 937 91 138 28 chr9 9529209 9529390 -114546782 + L1_Mus2 LINE L1 6366 6566 0 4 657 310 219 193 27 chr9 9529466 9529616 -114546556 - MLT1B LTR MaLR -210 180 6 4 657 342 327 58 32 chr9 9529940 9530095 -114546077 - B4A SINE B4 -133 159 1 4 657 1257 107 17 0 chr9 9530315 9530493 -114545679 - B2_Mm2 SINE B2 -14 181 1 4 657 1811 250 11 16 chr9 9532039 9532482 -114543690 + BGLII_B LTR ERVK 1 441 0 4 657 200 182 45 0 chr9 9532608 9532652 -114543520 + A-rich Low_complexity Low_complexity 2 47 0 4 657 396 0 0 0 chr9 9533587 9533631 -114542541 + (TATG)n Simple_repeat Simple_repeat 4 47 0 4 657 450 250 84 21 chr9 9533633 9533776 -114542396 - RSINE1 SINE B4 -1 164 13 4 657 180 125 0 0 chr9 9533845 9533877 -114542295 + (T)n Simple_repeat Simple_repeat 1 32 0 4 657 360 0 0 0 chr9 9534232 9534272 -114541900 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 657 286 314 9 79 chr9 9534296 9534410 -114541762 - PB1D7 SINE Alu -13 107 2 5 657 614 340 123 27 chr9 9534892 9535331 -114540841 - Lx9 LINE L1 -205 7439 6959 5 657 5709 116 9 13 chr9 9535432 9536995 -114539177 + Lx2 LINE L1 5693 6645 -352 5 657 1105 132 93 0 chr9 9536993 9537197 -114538975 + Lx2 LINE L1 6775 6997 0 5 657 559 292 56 56 chr9 9537979 9538211 -114537961 - MLT1C LTR MaLR -4 463 232 5 657 881 328 36 16 chr9 9538282 9538589 -114537583 - ORR1E LTR MaLR -43 316 4 5 657 36301 29 0 0 chr9 9538667 9545352 -114530820 - L1Md_T LINE L1 0 6585 2 5 657 204 125 0 0 chr9 9545430 9545462 -114530710 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 657 717 73 0 0 chr9 9545462 9545558 -114530614 + (GGGAGA)n Simple_repeat Simple_repeat 5 100 0 5 657 210 37 0 0 chr9 9545820 9545847 -114530325 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 657 386 250 0 0 chr9 9546469 9546545 -114529627 + ID4 SINE ID 6 81 -2 6 657 880 327 24 4 chr9 9547658 9547913 -114528259 + B4 SINE B4 2 261 -31 6 657 642 26 0 0 chr9 9547921 9547997 -114528175 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 657 668 312 22 9 chr9 9548765 9548988 -114527184 + MamRep605 Unknown Unknown 428 653 -223 6 657 473 248 130 32 chr9 9549621 9549653 -114526519 - MTE2a LTR MaLR -169 210 173 6 657 411 21 0 0 chr9 9549653 9549701 -114526471 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 657 473 248 130 32 chr9 9549701 9549822 -114526350 - MTE2a LTR MaLR -207 172 42 6 657 5820 132 10 33 chr9 9549875 9550471 -114525701 + L1VL4 LINE L1 13 592 -5710 6 657 3000 32 102 0 chr9 9550471 9550844 -114525328 - IAPLTR2a LTR ERVK 0 411 1 6 657 12521 93 18 13 chr9 9550844 9553075 -114523097 + L1VL4 LINE L1 593 2833 -726 6 657 192 77 0 0 chr9 9553088 9553114 -114523058 + (CCTG)n Simple_repeat Simple_repeat 1 26 0 6 657 327 178 11 32 chr9 9553124 9553217 -114522955 + CT-rich Low_complexity Low_complexity 6 96 0 6 657 574 315 160 26 chr9 9553250 9553563 -114522609 + MTC LTR MaLR 14 368 -53 7 657 485 192 11 80 chr9 9553617 9553792 -114522380 - L1_Mur3 LINE L1 -539 5341 5179 7 657 2002 123 9 31 chr9 9554638 9554958 -114521214 - ORR1A2 LTR MaLR -13 314 2 7 657 462 336 62 5 chr9 9555166 9555375 -114520797 - Lx8 LINE L1 -301 7172 6952 7 657 27653 11 0 0 chr9 9556393 9559699 -114516473 + L1Md_A LINE L1 2281 5586 -297 7 657 8804 15 0 0 chr9 9559700 9560695 -114515477 + L1Md_A LINE L1 5588 6582 0 7 657 1384 174 15 118 chr9 9560699 9560969 -114515203 + ORR1C2 LTR MaLR 79 323 -61 7 657 905 98 0 95 chr9 9560969 9561138 -114515034 - L1Md_F2 LINE L1 0 6582 6430 7 657 1384 174 15 118 chr9 9561138 9561205 -114514967 + ORR1C2 LTR MaLR 324 381 -3 7 657 333 329 0 0 chr9 9561205 9561275 -114514897 - ID SINE ID -146 78 9 7 657 418 224 19 9 chr9 9561290 9561398 -114514774 + RCHARR1 DNA MER1_type 866 974 0 7 657 3038 44 5 45 chr9 9561572 9561976 -114514196 - RLTR10 LTR ERVK -2 388 1 7 657 799 215 76 10 chr9 9562321 9562518 -114513654 - B3 SINE B2 -6 210 1 8 657 3878 197 43 39 chr9 9564139 9565189 -114510983 - RLTR21 LTR ERVK -430 1142 1 8 657 2188 162 21 5 chr9 9565614 9565999 -114510173 + ORR1B1 LTR MaLR 1 391 -3 8 657 274 354 89 60 chr9 9566257 9566660 -114509512 - L2 LINE L2 -2711 708 294 8 657 430 324 76 21 chr9 9567596 9567741 -114508431 - B4 SINE B4 -3 289 137 8 657 25 0 0 0 chr9 9567963 9567988 -114508184 + AT_rich Low_complexity Low_complexity 1 25 0 8 658 348 77 0 0 chr9 9569274 9569326 -114506846 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 8 658 1510 176 138 6 chr9 9569486 9569811 -114506361 - ORR1C1 LTR MaLR -5 373 6 8 658 383 299 96 12 chr9 9569980 9570016 -114506156 - B3A SINE B2 -18 180 141 8 658 306 0 0 0 chr9 9570016 9570050 -114506122 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 658 383 299 96 12 chr9 9570050 9570179 -114505993 - B3A SINE B2 -58 140 1 8 658 757 233 111 57 chr9 9570206 9570556 -114505616 - Lx7 LINE L1 0 7696 7328 9 658 382 218 0 0 chr9 9570685 9570763 -114505409 - Lx6 LINE L1 -875 6585 6508 9 658 15704 208 77 28 chr9 9570757 9571773 -114504399 - Lx7 LINE L1 -1259 6437 5354 9 658 1248 104 0 40 chr9 9571773 9571973 -114504199 - B2_Mm2 SINE B2 -2 193 2 9 658 15704 174 101 50 chr9 9571973 9572510 -114503662 - Lx7 LINE L1 -527 5353 4668 9 658 216 86 0 0 chr9 9572510 9572545 -114503627 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 658 15704 174 101 50 chr9 9572545 9573046 -114503126 - Lx7 LINE L1 -1213 4667 4155 9 658 204 40 0 0 chr9 9573046 9573071 -114503101 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 9 658 15704 174 101 50 chr9 9573071 9573431 -114502741 - Lx7 LINE L1 -1726 4154 3843 9 658 1255 109 0 10 chr9 9573431 9573625 -114502547 - B2_Mm2 SINE B2 -2 193 2 9 658 15704 174 101 50 chr9 9573625 9573729 -114502443 - Lx7 LINE L1 -2038 3842 3745 9 658 207 0 0 0 chr9 9573729 9573752 -114502420 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9 658 15704 174 101 50 chr9 9573752 9574765 -114501407 - Lx7 LINE L1 -2136 3744 2655 9 658 186 43 0 0 chr9 9574765 9574788 -114501384 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 658 15704 197 86 43 chr9 9574788 9576946 -114499226 - Lx7 LINE L1 -3226 2654 448 9 658 386 305 140 42 chr9 9577160 9577468 -114498704 + L2a LINE L2 2294 2631 -788 9 658 183 362 159 35 chr9 9577483 9577709 -114498463 + L2a LINE L2 2705 2958 -461 9 658 184 349 0 23 chr9 9577756 9577844 -114498328 + L2a LINE L2 3058 3143 -283 9 658 371 317 40 19 chr9 9578165 9578317 -114497855 + PB1D9 SINE Alu 1 149 0 9 658 1061 144 22 6 chr9 9578321 9578503 -114497669 + B2_Mm2 SINE B2 4 188 -7 1 658 207 0 0 0 chr9 9578505 9578528 -114497644 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 658 207 0 0 0 chr9 9578544 9578567 -114497605 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 658 256 333 62 51 chr9 9578742 9578919 -114497253 - MIR SINE MIR -24 238 60 1 658 258 317 133 57 chr9 9579995 9580259 -114495913 - B4A SINE B4 -8 284 1 1 658 275 305 24 41 chr9 9580386 9580509 -114495663 - MLT1A-int LTR MaLR -1089 282 162 1 658 425 357 28 9 chr9 9580611 9580823 -114495349 - MLT1A LTR MaLR 0 390 175 1 658 362 165 29 10 chr9 9580874 9580978 -114495194 + (TA)n Simple_repeat Simple_repeat 2 107 0 1 658 427 280 13 71 chr9 9581027 9581181 -114494991 - MLT1A LTR MaLR -229 145 1 1 658 1616 224 85 11 chr9 9581442 9581807 -114494365 + MTD LTR MaLR 20 411 -8 1 658 2121 118 32 0 chr9 9581919 9582232 -114493940 + ORR1A2 LTR MaLR 5 327 0 1 658 466 177 97 0 chr9 9582379 9582492 -114493680 + Lx9 LINE L1 7356 7479 -165 1 658 545 288 125 26 chr9 9582721 9582985 -114493187 - B4A SINE B4 -2 290 1 1 658 372 260 18 55 chr9 9583011 9583121 -114493051 - MER58B DNA MER1_type -235 106 1 1 658 331 351 93 32 chr9 9583708 9583955 -114492217 - L1M5 LINE L1 -361 5763 5502 1 658 424 32 32 0 chr9 9584408 9584470 -114491702 + (CAAAC)n Simple_repeat Simple_repeat 3 66 0 1 658 405 171 0 0 chr9 9585605 9585693 -114490479 + T-rich Low_complexity Low_complexity 1 88 0 1 658 2765 106 31 40 chr9 9585744 9586195 -114489977 - Lx2 LINE L1 0 6997 6551 1 658 407 309 0 0 chr9 9586651 9586748 -114489424 - B3 SINE B2 -118 98 2 1 658 399 171 0 0 chr9 9586788 9586864 -114489308 + CT-rich Low_complexity Low_complexity 1 76 0 1 658 546 213 56 24 chr9 9586868 9586993 -114489179 - B1F SINE Alu -6 143 15 1 658 886 308 58 14 chr9 9587007 9587559 -114488613 - L1M2 LINE L1 -1077 5066 4458 1 658 643 268 0 0 chr9 9587761 9587884 -114488288 - RSINE1 SINE B4 -34 131 9 1 658 883 275 88 38 chr9 9587915 9588358 -114487814 - L1M2 LINE L1 -2180 3963 3499 1 658 813 281 52 10 chr9 9588388 9588582 -114487590 - B3 SINE B2 -9 207 6 1 658 216 0 0 0 chr9 9588594 9588618 -114487554 + (T)n Simple_repeat Simple_repeat 1 24 0 1 658 253 256 76 53 chr9 9588695 9588827 -114487345 - L1_Mur2 LINE L1 -3253 2624 2490 1 658 483 289 43 32 chr9 9588822 9589191 -114486981 - L1M2 LINE L1 -2732 3411 3039 1 658 3145 174 78 35 chr9 9589318 9589968 -114486204 + RLTR33 LTR ERVK 1 678 0 1 658 267 93 0 0 chr9 9591022 9591065 -114485107 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 1 658 1058 116 0 0 chr9 9591066 9591212 -114484960 - B1_Mus1 SINE Alu -2 146 1 1 658 341 331 16 8 chr9 9591239 9591364 -114484808 - RMER15 LTR ERVL -107 468 343 1 658 394 219 44 6 chr9 9591665 9591774 -114484398 - MTC LTR MaLR -54 367 255 1 658 313 341 36 6 chr9 9592096 9592261 -114483911 - L1M2 LINE L1 -766 5377 5208 1 658 643 272 28 39 chr9 9592656 9592836 -114483336 + ID_B1 SINE B4 1 178 -46 1 658 328 386 63 67 chr9 9592851 9593090 -114483082 + MLT1F2 LTR MaLR 11 248 -312 1 658 261 0 0 0 chr9 9593324 9593353 -114482819 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 658 323 281 57 19 chr9 9593376 9593481 -114482691 - PB1D7 SINE Alu -9 111 3 1 658 242 330 120 11 chr9 9593928 9594020 -114482152 + ID_B1 SINE B4 29 130 -94 1 658 652 122 16 0 chr9 9594048 9594171 -114482001 + (TTCC)n Simple_repeat Simple_repeat 2 126 0 1 658 1460 0 0 16 chr9 9594185 9594440 -114481732 + (TTC)n Simple_repeat Simple_repeat 1 250 0 1 658 588 84 0 0 chr9 9594440 9594523 -114481649 + (TC)n Simple_repeat Simple_repeat 1 83 0 1 658 274 297 0 0 chr9 9594539 9594603 -114481569 - ID4_ SINE ID -15 68 5 1 658 198 0 0 0 chr9 9594611 9594633 -114481539 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 1 658 237 253 80 16 chr9 9594685 9594770 -114481402 + B1F SINE Alu 23 149 0 1 658 198 0 0 0 chr9 9594775 9594797 -114481375 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1 658 192 0 75 50 chr9 9595197 9595237 -114480935 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 1 658 424 319 55 85 chr9 9595263 9595462 -114480710 + ORR1D2 LTR MaLR 29 221 -149 1 658 1512 181 67 33 chr9 9595462 9595789 -114480383 + RMER17B LTR ERVK 1 333 -573 1 658 1571 37 11 0 chr9 9595789 9595978 -114480194 - B2_Mm1a SINE B2 -2 191 1 1 658 1512 181 67 33 chr9 9595978 9596011 -114480161 + RMER17B LTR ERVK 334 373 -533 1 658 1624 175 94 9 chr9 9595983 9596301 -114479871 + RMER17B LTR ERVK 614 958 0 1 658 398 228 133 49 chr9 9596301 9596429 -114479743 + ORR1D2 LTR MaLR 226 365 -5 1 658 235 224 20 0 chr9 9596433 9596482 -114479690 + Lx9 LINE L1 5858 5907 -1737 1 658 693 267 94 78 chr9 9596516 9596959 -114479213 + RMER17D2 LTR ERVK 1 441 -465 1 658 7587 93 13 6 chr9 9596960 9598741 -114477431 - L1_Mus1 LINE L1 -112 6455 4659 1 658 2874 73 30 8 chr9 9598745 9599147 -114477025 + IAPLTR2a LTR ERVK 1 411 0 1 658 589 97 16 124 chr9 9599148 9599277 -114476895 + IAPEz-int LTR ERVK 9 123 -6358 1 658 229 267 0 0 chr9 9599277 9599322 -114476850 + RLTR27 LTR ERVK 231 275 -34 1 658 3625 59 4 18 chr9 9599322 9599824 -114476348 + IAPEz-int LTR ERVK 168 662 -5819 1 658 2517 68 0 3 chr9 9599824 9600166 -114476006 + IAPEz-int LTR ERVK 1359 1699 -4782 1 658 6571 34 2 17 chr9 9600160 9601001 -114475171 + IAPEz-int LTR ERVK 5651 6479 -2 1 658 2890 70 30 8 chr9 9601003 9601405 -114474767 + IAPLTR2a LTR ERVK 1 411 0 1 658 20175 114 15 1 chr9 9601411 9605714 -114470458 - L1VL1 LINE L1 -1229 4654 289 1 658 186 200 93 67 chr9 9605903 9605978 -114470194 + L4 LINE RTE 1167 1243 -786 1 658 437 123 0 0 chr9 9606188 9606253 -114469919 - L1VL1 LINE L1 -6344 78 14 1 658 790 267 126 115 chr9 9606255 9606926 -114469246 + RMER13B LTR ERVK 288 899 -9 1 658 742 284 23 20 chr9 9607174 9607385 -114468787 - B3A SINE B2 0 216 2 1 658 1549 165 34 7 chr9 9607971 9608240 -114467932 - RLTR17 LTR ERVK 0 692 417 1 658 463 267 6 93 chr9 9608213 9608374 -114467798 - RLTR31_Mm LTR ERVK -51 510 364 1 658 1362 81 81 0 chr9 9608375 9608585 -114467587 + L1_Mus3 LINE L1 5877 6103 -535 1 658 1618 100 50 4 chr9 9608585 9608845 -114467327 + L1_Mus3 LINE L1 6361 6632 -6 1 658 342 99 68 27 chr9 9608846 9608919 -114467253 - RLTR31_Mm LTR ERVK -187 374 299 1 658 22265 122 12 3 chr9 9608919 9614338 -114461834 + L1Md_F LINE L1 388 5868 -15 1 658 622 314 11 11 chr9 9614371 9614548 -114461624 - B3A SINE B2 -16 182 6 1 658 301 289 71 20 chr9 9614607 9614706 -114461466 - L1MEe LINE L1 -1019 5127 5024 1 658 1692 189 43 82 chr9 9615712 9616080 -114460092 + ORR1B1 LTR MaLR 41 394 0 1 658 335 319 70 62 chr9 9616440 9616697 -114459475 - L1MEe LINE L1 -3959 2207 1949 1 658 435 100 0 0 chr9 9617057 9617127 -114459045 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 658 418 309 6 0 chr9 9617213 9617378 -114458794 - L1M5 LINE L1 -339 5785 5620 1 658 311 145 0 14 chr9 9617501 9617571 -114458601 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 658 338 42 0 20 chr9 9617667 9617716 -114458456 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1 658 228 179 23 45 chr9 9617990 9618078 -114458094 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 1 658 459 0 0 0 chr9 9618100 9618151 -114458021 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 658 312 27 0 0 chr9 9618151 9618187 -114457985 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 658 219 229 14 41 chr9 9618330 9618403 -114457769 + GA-rich Low_complexity Low_complexity 2 72 0 1 658 634 333 25 25 chr9 9618670 9618867 -114457305 + B3A SINE B2 2 198 0 1 658 613 249 107 39 chr9 9619161 9619721 -114456451 - L1MC1 LINE L1 -119 6214 5588 1 658 273 268 84 0 chr9 9619727 9619798 -114456374 + B3 SINE B2 1 77 -139 1 658 39496 6 0 1 chr9 9619800 9626763 -114449409 - L1Md_A LINE L1 0 6582 1 1 658 522 282 38 15 chr9 9626763 9626896 -114449276 + B3 SINE B2 51 186 -30 1 658 263 232 61 0 chr9 9626929 9627011 -114449161 - L1MC1 LINE L1 -582 5582 5496 1 658 441 317 22 0 chr9 9627145 9627328 -114448844 - L1MC LINE L1 -3752 2394 2208 1 658 206 207 17 0 chr9 9627368 9627426 -114448746 + CT-rich Low_complexity Low_complexity 3 61 0 1 658 319 213 148 0 chr9 9627430 9627491 -114448681 - ID SINE ID -153 71 2 1 658 258 389 72 92 chr9 9627681 9628082 -114448090 + LTR41B LTR ERVL 254 660 -98 1 658 367 285 128 23 chr9 9628082 9628215 -114447957 - B1F SINE Alu -2 147 1 1 658 258 389 72 92 chr9 9628215 9628283 -114447889 + LTR41B LTR ERVL 661 714 -44 1 658 266 259 95 41 chr9 9629120 9629289 -114446883 - Lx8 LINE L1 -28 7445 7268 1 658 455 225 49 24 chr9 9629330 9629453 -114446719 + Lx8 LINE L1 7130 7255 -218 1 658 407 152 13 0 chr9 9629486 9629565 -114446607 + T-rich Low_complexity Low_complexity 2 81 0 1 658 277 287 26 69 chr9 9629565 9629681 -114446491 - PB1D10 SINE Alu 0 117 7 1 658 570 252 75 0 chr9 9630047 9630194 -114445978 - B4A SINE B4 -130 162 5 1 658 536 229 42 0 chr9 9630760 9630878 -114445294 + ETnERV2-int LTR ERVK 7070 7192 -214 1 658 478 360 34 38 chr9 9631274 9631331 -114444841 - B4A SINE B4 0 292 242 1 658 4291 26 0 2 chr9 9631331 9631825 -114444347 + MT2_Mm LTR ERVL 1 493 0 1 658 478 360 34 38 chr9 9631825 9632059 -114444113 - B4A SINE B4 -51 241 2 1 658 635 169 145 0 chr9 9633801 9633925 -114442247 + B1_Mus1 SINE Alu 2 143 -5 1 658 1123 269 62 59 chr9 9633983 9634307 -114441865 - ORR1E LTR MaLR -2 357 33 1 658 617 281 72 54 chr9 9634817 9635246 -114440926 + L1M3 LINE L1 4646 5082 -1058 1 658 287 311 33 55 chr9 9635370 9635645 -114440527 + L1M3 LINE L1 5270 5544 -768 1 658 353 259 230 77 chr9 9635676 9636015 -114440157 + Lx8 LINE L1 7074 7464 -9 1 658 270 206 56 42 chr9 9637662 9637733 -114438439 + MIR SINE MIR 161 232 -30 1 658 215 135 18 71 chr9 9637736 9637792 -114438380 + T-rich Low_complexity Low_complexity 2 54 0 1 658 213 81 54 0 chr9 9637926 9637963 -114438209 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 658 446 78 69 0 chr9 9641655 9641757 -114434415 + (TTTTTG)n Simple_repeat Simple_repeat 6 114 0 1 658 414 0 0 0 chr9 9641960 9642006 -114434166 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 658 396 0 0 0 chr9 9642006 9642049 -114434123 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 658 193 385 9 52 chr9 9642839 9642954 -114433218 + MIRb SINE MIR 106 215 -53 1 658 286 383 63 40 chr9 9643117 9643370 -114432802 + MLT1I LTR MaLR 31 289 -122 1 658 437 304 39 23 chr9 9644002 9644130 -114432042 - ID_B1 SINE B4 -13 211 82 2 658 488 269 57 30 chr9 9644369 9644599 -114431573 - L1MA4A LINE L1 -406 5897 5662 2 658 23 0 0 0 chr9 9644712 9644735 -114431437 + AT_rich Low_complexity Low_complexity 1 23 0 2 658 4235 62 19 9 chr9 9644736 9645301 -114430871 + L1Md_F2 LINE L1 6009 6579 -3 2 658 428 228 10 24 chr9 9645322 9645621 -114430551 + (TATG)n Simple_repeat Simple_repeat 1 294 0 2 658 575 273 52 42 chr9 9645623 9645814 -114430358 - B3A SINE B2 -15 201 9 2 658 353 304 31 16 chr9 9646466 9646593 -114429579 + MER3 DNA MER1_type 14 142 -67 2 658 3721 158 105 3 chr9 9646677 9647346 -114428826 + RMER19A LTR ERVK 1 737 0 2 658 468 225 21 42 chr9 9647370 9647514 -114428658 - Lx8 LINE L1 -351 7122 6982 2 658 3028 35 0 0 chr9 9647943 9648289 -114427883 + ORR1A0 LTR MaLR 1 346 0 2 658 1793 234 63 63 chr9 9648325 9648878 -114427294 + RLTR31_Mur LTR ERVK 1 553 0 2 658 24 0 0 0 chr9 9649144 9649168 -114427004 + AT_rich Low_complexity Low_complexity 1 24 0 2 658 421 187 0 26 chr9 9649404 9649481 -114426691 + PB1D10 SINE Alu 34 108 -9 2 658 5157 93 106 5 chr9 9649665 9650432 -114425740 - Lx3_Mus LINE L1 -1 7008 6165 2 658 9106 79 13 95 chr9 9650432 9650635 -114425537 + Lx3_Mus LINE L1 4433 4635 -1251 2 658 237 33 0 0 chr9 9650635 9650665 -114425507 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 658 9106 79 13 95 chr9 9650665 9651395 -114424777 + Lx3_Mus LINE L1 4636 5368 -518 2 658 1067 79 7 0 chr9 9651395 9651535 -114424637 + B1_Mus2 SINE Alu 1 141 -6 2 658 9106 82 11 71 chr9 9651535 9652460 -114423712 + Lx3_Mus LINE L1 5369 6155 -854 2 658 263 205 84 0 chr9 9653301 9653384 -114422788 - L1MC5 LINE L1 -733 7228 7139 2 658 204 40 0 0 chr9 9654693 9654718 -114421454 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 658 591 15 0 0 chr9 9654718 9654785 -114421387 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 658 249 33 0 0 chr9 9654785 9654814 -114421358 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 658 615 117 0 0 chr9 9655106 9655200 -114420972 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 658 865 67 17 0 chr9 9655315 9655434 -114420738 - B1_Mus1 SINE Alu 0 148 28 2 658 664 295 90 42 chr9 9655773 9656141 -114420031 + RLTR16 LTR ERVK 1 432 -260 2 658 731 164 0 31 chr9 9656814 9657045 -114419127 + C-rich Low_complexity Low_complexity 1 223 0 2 658 1877 179 52 65 chr9 9657961 9658512 -114417660 + RLTR31A_Mm LTR ERVK 1 561 0 2 658 21 0 0 0 chr9 9660869 9660890 -114415282 + AT_rich Low_complexity Low_complexity 1 21 0 2 658 25 31 0 0 chr9 9661829 9661861 -114414311 + AT_rich Low_complexity Low_complexity 1 32 0 2 658 3261 3 0 0 chr9 9661961 9662322 -114413850 + L1Md_A LINE L1 6222 6582 0 2 658 284 324 19 28 chr9 9662517 9662625 -114413547 - MIRb SINE MIR -31 237 131 2 658 439 186 68 0 chr9 9662634 9662752 -114413420 + Lx9 LINE L1 7519 7644 0 2 658 879 287 54 104 chr9 9662848 9663258 -114412914 - MTE2a LTR MaLR 0 419 18 2 658 444 82 0 0 chr9 9663380 9663441 -114412731 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 658 238 340 11 14 chr9 9664343 9664452 -114411720 + B4A SINE B4 149 256 -36 2 658 464 269 125 22 chr9 9664530 9664762 -114411410 + Lx8 LINE L1 7209 7464 -9 2 658 1534 177 129 49 chr9 9664785 9665135 -114411037 + ORR1C1 LTR MaLR 1 378 0 2 658 303 28 0 0 chr9 9665207 9665243 -114410929 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 658 776 154 51 7 chr9 9665539 9665676 -114410496 - B1_Mus2 SINE Alu 0 147 5 2 658 261 0 0 0 chr9 9665686 9665715 -114410457 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 658 192 152 0 0 chr9 9665737 9665770 -114410402 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 658 25 0 0 0 chr9 9665807 9665832 -114410340 + AT_rich Low_complexity Low_complexity 1 25 0 2 658 249 33 0 0 chr9 9665856 9665886 -114410286 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 658 22 35 0 0 chr9 9666485 9666514 -114409658 + AT_rich Low_complexity Low_complexity 1 29 0 2 658 427 276 65 28 chr9 9667268 9667376 -114408796 + PB1D7 SINE Alu 4 115 -2 2 658 276 53 0 0 chr9 9667819 9667857 -114408315 + (T)n Simple_repeat Simple_repeat 1 38 0 2 658 201 47 45 23 chr9 9667898 9667942 -114408230 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 2 658 387 338 7 46 chr9 9668800 9668952 -114407220 - B4 SINE B4 -1 291 146 2 658 189 0 0 0 chr9 9669235 9669256 -114406916 + (A)n Simple_repeat Simple_repeat 1 21 0 2 658 225 336 143 52 chr9 9670310 9670464 -114405708 - MIRb SINE MIR -58 210 43 2 658 493 284 35 0 chr9 9670760 9670901 -114405271 + MTE2a LTR MaLR 3 148 -231 2 658 486 218 0 0 chr9 9670920 9671030 -114405142 + (TA)n Simple_repeat Simple_repeat 2 111 0 2 658 282 273 123 35 chr9 9671123 9671237 -114404935 + MTE2a LTR MaLR 256 379 0 2 658 349 252 187 10 chr9 9672499 9672706 -114403466 + L1MA5 LINE L1 5639 5917 -383 2 658 1275 161 9 22 chr9 9672806 9673035 -114403137 + URR1A DNA MER1_type 1 226 0 2 658 331 333 69 27 chr9 9675086 9675348 -114400824 - B4A SINE B4 -18 274 2 2 658 575 288 78 49 chr9 9675526 9675873 -114400299 - ORR1E LTR MaLR -2 357 1 2 658 345 319 51 15 chr9 9677290 9677427 -114398745 - B4A SINE B4 -150 142 1 2 658 495 0 0 0 chr9 9678027 9678082 -114398090 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 658 937 242 35 15 chr9 9678176 9678373 -114397799 + B3 SINE B2 14 214 -2 2 658 204 176 80 13 chr9 9678568 9678643 -114397529 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 2 658 546 16 0 0 chr9 9678659 9678722 -114397450 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2 658 594 220 86 22 chr9 9678872 9679104 -114397068 + Lx9 LINE L1 7396 7642 -2 2 658 26 0 0 0 chr9 9679109 9679135 -114397037 + AT_rich Low_complexity Low_complexity 1 26 0 2 658 386 162 14 14 chr9 9680433 9680502 -114395670 - HAL1-3A_ME LINE L1 -814 2044 1976 2 658 186 208 0 0 chr9 9680529 9680577 -114395595 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 658 758 282 6 13 chr9 9680583 9680741 -114395431 - RSINE1 SINE B4 0 165 9 2 658 445 196 56 0 chr9 9681753 9681860 -114394312 + L1_Rod LINE L1 5080 5192 -655 2 658 1596 225 58 34 chr9 9681878 9682347 -114393825 + L1_Rod LINE L1 5252 5731 -116 2 658 528 328 75 34 chr9 9682490 9682755 -114393417 - B4A SINE B4 -16 276 1 2 658 511 246 98 8 chr9 9682833 9682956 -114393216 + ID_B1 SINE B4 91 224 0 2 658 1749 164 20 3 chr9 9683202 9683502 -114392670 + Lx4A LINE L1 6754 7058 0 2 658 297 0 0 0 chr9 9684339 9684372 -114391800 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 658 461 115 0 13 chr9 9684372 9684450 -114391722 + (TA)n Simple_repeat Simple_repeat 1 78 0 2 658 189 136 111 22 chr9 9685019 9685064 -114391108 + L4 LINE RTE 998 1046 -983 2 658 324 0 0 0 chr9 9685702 9685738 -114390434 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 658 182 118 0 29 chr9 9685778 9685813 -114390359 + (TTCTCC)n Simple_repeat Simple_repeat 3 36 0 2 658 1576 161 149 20 chr9 9686214 9686563 -114389609 + ORR1B1 LTR MaLR 1 394 0 2 658 5173 193 113 83 chr9 9686564 9688027 -114388145 + ORR1B1-int LTR MaLR 2 1508 -1 2 658 1764 180 90 17 chr9 9688038 9688382 -114387790 + ORR1B1 LTR MaLR 23 391 -3 2 658 260 333 80 18 chr9 9688469 9688582 -114387590 + L2a LINE L2 3305 3424 -2 2 658 307 370 101 34 chr9 9688890 9689248 -114386924 + L2 LINE L2 2142 2523 -896 2 658 874 284 33 18 chr9 9689500 9689838 -114386334 - MTEa LTR MaLR -10 369 11 2 658 474 28 42 0 chr9 9690039 9690111 -114386061 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 658 291 303 20 20 chr9 9690324 9690425 -114385747 - Lx7 LINE L1 -469 7227 7127 2 658 1035 244 45 0 chr9 9691126 9691368 -114384804 + MTC LTR MaLR 5 257 -164 2 658 220 236 49 25 chr9 9691482 9691558 -114384614 - B4A SINE B4 -209 83 2 2 658 504 276 69 20 chr9 9692296 9692499 -114383673 + ID_B1 SINE B4 3 215 -9 2 658 210 171 0 24 chr9 9692499 9692541 -114383631 + (CAA)n Simple_repeat Simple_repeat 1 41 0 2 658 1131 71 0 0 chr9 9693217 9693358 -114382814 - B1_Mus1 SINE Alu -7 141 1 2 658 1108 106 18 6 chr9 9694024 9694195 -114381977 - B2_Mm2 SINE B2 -22 173 1 2 658 207 0 0 0 chr9 9694581 9694604 -114381568 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 658 198 329 24 25 chr9 9694720 9694812 -114381360 + MIRc SINE MIR 62 159 -117 2 658 386 314 29 7 chr9 9694824 9694962 -114381210 + B1F1 SINE Alu 1 141 -8 2 658 281 280 110 0 chr9 9695799 9695899 -114380273 + ID_B1 SINE B4 105 215 -9 2 658 235 309 133 26 chr9 9695899 9695912 -114380260 + B1F2 SINE Alu 24 148 -1 2 658 481 362 13 0 chr9 9696040 9696189 -114379983 + B3A SINE B2 2 152 -46 2 658 522 75 0 0 chr9 9696208 9696288 -114379884 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 658 200 183 48 32 chr9 9697688 9697750 -114378422 + (TATG)n Simple_repeat Simple_repeat 1 63 0 2 658 941 160 60 11 chr9 9698007 9698190 -114377982 - B2_Mm2 SINE B2 -3 192 1 2 658 197 302 33 55 chr9 9698325 9698416 -114377756 - MIR SINE MIR -170 92 4 2 658 327 322 65 71 chr9 9698620 9698774 -114377398 - RSINE1 SINE B4 0 165 13 2 658 1043 275 14 14 chr9 9698785 9699006 -114377166 - B4A SINE B4 -62 230 10 2 659 25 31 0 0 chr9 9700315 9700347 -114375825 + AT_rich Low_complexity Low_complexity 1 32 0 2 659 481 301 106 24 chr9 9700362 9700532 -114375640 - B3A SINE B2 -7 191 8 2 659 285 301 104 12 chr9 9700510 9700631 -114375541 - PB1D10 SINE Alu -21 128 1 2 659 207 0 0 0 chr9 9701116 9701139 -114375033 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 659 302 284 68 0 chr9 9701180 9701268 -114374904 - PB1D10 SINE Alu 0 117 24 3 659 895 113 20 0 chr9 9701889 9702040 -114374132 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 3 659 494 127 38 0 chr9 9702378 9702457 -114373715 - B1_Mus2 SINE Alu -1 146 65 3 659 397 259 143 71 chr9 9702474 9702628 -114373544 - B3A SINE B2 -33 165 1 3 659 4997 53 2 0 chr9 9702690 9703311 -114372861 + L1Md_F2 LINE L1 5961 6582 0 3 659 301 250 9 18 chr9 9703471 9703585 -114372587 + CT-rich Low_complexity Low_complexity 3 115 0 3 659 501 17 0 0 chr9 9704433 9704491 -114371681 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 659 44 46 0 0 chr9 9706330 9706395 -114369777 + AT_rich Low_complexity Low_complexity 1 65 0 3 659 787 228 57 10 chr9 9707845 9708042 -114368130 + MTD LTR MaLR 1 209 -212 3 659 3242 76 7 2 chr9 9708042 9708479 -114367693 + L1_Mus1 LINE L1 6121 6559 -8 3 659 717 246 97 8 chr9 9708479 9708519 -114367653 + MTD LTR MaLR 210 258 -163 3 659 26116 126 19 10 chr9 9708536 9713621 -114362551 + L1_Mus1 LINE L1 380 5509 -374 3 659 1107 67 0 0 chr9 9713618 9713767 -114362405 + L1_Mus1 LINE L1 5820 5968 -599 3 659 3246 70 81 5 chr9 9713767 9714213 -114361959 + L1_Mus1 LINE L1 6086 6565 -2 3 659 30 59 0 0 chr9 9714213 9714264 -114361908 + AT_rich Low_complexity Low_complexity 1 51 0 3 659 463 233 235 7 chr9 9714264 9714448 -114361724 + MTD LTR MaLR 193 405 -14 3 659 2292 190 33 64 chr9 9714599 9715145 -114361027 + Lx2B LINE L1 6471 6999 -1 3 659 1084 76 20 14 chr9 9715146 9715293 -114360879 + B1_Mus1 SINE Alu 1 148 0 3 659 191 36 36 0 chr9 9715295 9715323 -114360849 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 3 659 399 295 46 8 chr9 9715851 9715981 -114360191 + B3 SINE B2 71 205 -11 3 659 3004 200 126 3 chr9 9716001 9716737 -114359435 + Lx5 LINE L1 5593 6419 -631 3 659 1625 188 96 21 chr9 9716731 9717107 -114359065 + Lx5 LINE L1 6647 7050 0 3 659 22 35 0 0 chr9 9717784 9717813 -114358359 + AT_rich Low_complexity Low_complexity 1 29 0 3 659 732 199 14 14 chr9 9718791 9718939 -114357233 - B1_Mus1 SINE Alu 0 148 1 3 659 5128 111 16 1 chr9 9719043 9719809 -114356363 - L1_Mus3 LINE L1 -3 6635 5859 3 659 17525 111 7 3 chr9 9719813 9723841 -114352331 - L1_Mus1 LINE L1 0 6567 2519 3 659 2194 159 149 45 chr9 9724898 9725413 -114350759 + RMER16-int LTR ERVK 251 819 -4587 3 659 644 192 25 0 chr9 9725418 9725538 -114350634 + RMER16-int LTR ERVK 938 1060 -5077 3 659 9027 147 82 59 chr9 9725553 9726050 -114350122 + ETnERV2-int LTR ERVK 2935 3389 -4017 3 659 190 254 143 0 chr9 9726050 9726113 -114350059 - MER5A DNA MER1_type -109 80 9 3 659 9027 147 82 59 chr9 9726113 9727520 -114348652 + ETnERV2-int LTR ERVK 3390 4679 -2727 3 659 3105 76 0 0 chr9 9727518 9727925 -114348247 + ETnERV2-int LTR ERVK 5356 5762 -1644 3 659 5871 173 75 52 chr9 9727917 9729365 -114346807 + ETnERV3-int LTR ERVK 3909 5388 -420 3 659 1178 84 0 0 chr9 9729390 9729557 -114346615 + RLTR13D5 LTR ERVK 291 457 -566 3 659 293 272 0 0 chr9 9729617 9729698 -114346474 + ETnERV2-int LTR ERVK 6808 6888 -1329 3 659 447 314 23 6 chr9 9729827 9730000 -114346172 + RLTR45-int LTR ERVK 6355 6530 -714 3 659 282 362 86 5 chr9 9730484 9730670 -114345502 + RLTR45-int LTR ERVK 7046 7246 -160 3 659 7809 117 12 20 chr9 9731002 9732333 -114343839 - L1_Mm LINE L1 -3360 2523 1204 3 659 5207 143 30 18 chr9 9732334 9734001 -114342171 - L1VL1 LINE L1 -1816 1882 192 3 659 437 336 6 5 chr9 9734453 9734589 -114341583 + B3A SINE B2 1 143 -50 3 659 369 0 0 0 chr9 9734589 9734630 -114341542 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 659 241 337 74 58 chr9 9734630 9734682 -114341490 + B2_Mm1a SINE B2 144 192 -1 3 659 947 303 93 19 chr9 9736830 9737207 -114338965 + MTD LTR MaLR 1 405 -14 3 659 195 164 69 52 chr9 9737622 9737680 -114338492 - L3 LINE CR1 -3713 776 718 3 659 756 119 0 0 chr9 9737984 9738102 -114338070 + (TA)n Simple_repeat Simple_repeat 2 119 0 3 659 267 203 0 0 chr9 9738114 9738173 -114337999 + CT-rich Low_complexity Low_complexity 2 60 0 3 659 3580 50 55 0 chr9 9739104 9739562 -114336610 + L1Md_F2 LINE L1 6100 6582 0 3 659 265 176 13 13 chr9 9739783 9739858 -114336314 + CT-rich Low_complexity Low_complexity 3 77 0 3 659 6104 164 18 4 chr9 9740287 9741393 -114334779 - L1_Mm LINE L1 -730 5570 4427 3 659 6748 121 34 5 chr9 9741394 9742505 -114333667 + L1_Mus4 LINE L1 5496 6635 -1 3 659 209 356 164 15 chr9 9744280 9744616 -114331556 + L2 LINE L2 1926 2311 -1108 3 659 534 319 78 12 chr9 9744685 9744942 -114331230 - B4A SINE B4 -18 274 1 3 659 21 0 0 0 chr9 9744975 9744996 -114331176 + AT_rich Low_complexity Low_complexity 1 21 0 3 659 270 0 0 0 chr9 9745938 9745968 -114330204 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 659 24 91 0 0 chr9 9746322 9746388 -114329784 + AT_rich Low_complexity Low_complexity 1 66 0 3 659 370 340 7 20 chr9 9747246 9747396 -114328776 - B1F SINE Alu -1 148 1 3 659 441 286 19 34 chr9 9747894 9748100 -114328072 + L1MC4a LINE L1 7680 7882 0 3 659 3225 78 2 0 chr9 9749598 9750021 -114326151 + L1_Mus1 LINE L1 6144 6567 0 3 659 441 0 0 0 chr9 9750612 9750661 -114325511 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 659 319 375 91 56 chr9 9751426 9751765 -114324407 + MLT1G LTR MaLR 38 388 -203 3 659 605 224 173 11 chr9 9752671 9752856 -114323316 - B3 SINE B2 0 216 2 3 659 1194 146 21 95 chr9 9752936 9753179 -114322993 + URR1B DNA MER1_type 1 225 0 3 659 792 139 8 0 chr9 9753396 9753525 -114322647 - B2_Mm2 SINE B2 -65 130 1 3 659 1090 194 100 8 chr9 9753527 9753787 -114322385 + Lx2B LINE L1 6704 6987 -13 3 659 182 227 23 0 chr9 9753882 9753926 -114322246 + L2a LINE L2 3377 3421 -5 3 659 307 259 138 0 chr9 9755119 9755235 -114320937 + Lx7 LINE L1 7076 7207 -489 3 659 187 227 15 15 chr9 9756432 9756499 -114319673 + (TATG)n Simple_repeat Simple_repeat 1 67 0 3 659 317 290 0 60 chr9 9756525 9756631 -114319541 - B1F SINE Alu -19 98 6 3 659 358 127 84 7 chr9 9757149 9757292 -114318880 + (TCTA)n Simple_repeat Simple_repeat 1 154 0 3 659 221 159 0 0 chr9 9757473 9757517 -114318655 + A-rich Low_complexity Low_complexity 1 44 0 3 659 28531 141 26 42 chr9 9758206 9762550 -114313622 + L1_Mus2 LINE L1 223 4528 -1355 3 659 4374 38 0 2 chr9 9762550 9763072 -114313100 + L1Md_T LINE L1 6061 6581 -1 3 659 28531 107 14 17 chr9 9763072 9765105 -114311067 + L1_Mus2 LINE L1 4529 6566 0 3 659 185 365 53 13 chr9 9768780 9768930 -114307242 - L2 LINE L2 -401 3018 2863 3 659 223 369 12 0 chr9 9770228 9770312 -114305860 + PB1D10 SINE Alu 11 95 -22 3 659 243 61 0 0 chr9 9771376 9771409 -114304763 + (TATG)n Simple_repeat Simple_repeat 4 36 0 3 659 317 331 55 39 chr9 9771421 9771549 -114304623 - B3A SINE B2 -13 203 76 3 659 356 270 69 38 chr9 9771949 9772080 -114304092 - RSINE1 SINE B4 -29 136 2 3 659 207 227 91 26 chr9 9774496 9774573 -114301599 + MIR SINE MIR 112 193 -69 3 659 26 50 0 0 chr9 9774742 9774782 -114301390 + AT_rich Low_complexity Low_complexity 1 40 0 3 659 868 296 25 14 chr9 9774811 9775095 -114301077 - B4A SINE B4 -4 288 2 3 659 550 327 50 28 chr9 9775425 9775708 -114300464 - B4 SINE B4 0 292 4 3 659 608 272 0 0 chr9 9777413 9777538 -114298634 + RSINE1 SINE B4 12 136 -29 3 659 417 39 0 0 chr9 9777539 9777590 -114298582 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 659 31 0 0 0 chr9 9778083 9778114 -114298058 + AT_rich Low_complexity Low_complexity 1 31 0 3 659 333 329 49 35 chr9 9778117 9778259 -114297913 - ID_B1 SINE B4 0 224 81 3 659 225 318 51 43 chr9 9781176 9781314 -114294858 + L1MD3 LINE L1 6533 6671 -1324 3 659 405 0 0 0 chr9 9781316 9781361 -114294811 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 659 630 0 0 0 chr9 9782282 9782352 -114293820 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 659 417 289 21 62 chr9 9782759 9782903 -114293269 - B1F1 SINE Alu -9 140 3 3 659 744 182 62 57 chr9 9783745 9783937 -114292235 + B2_Mm2 SINE B2 1 193 -2 3 659 377 95 16 0 chr9 9784287 9784350 -114291822 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 3 659 968 112 28 0 chr9 9784537 9784680 -114291492 - B1_Mm SINE Alu 0 147 1 3 659 285 269 82 25 chr9 9785776 9785898 -114290274 - B1F SINE Alu -12 137 9 3 659 279 0 0 0 chr9 9786399 9786430 -114289742 + (ATTTG)n Simple_repeat Simple_repeat 2 32 0 3 659 181 188 15 30 chr9 9786874 9786940 -114289232 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 659 225 0 0 0 chr9 9786954 9786979 -114289193 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 659 492 18 0 0 chr9 9786979 9787035 -114289137 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 659 25 31 0 0 chr9 9787399 9787431 -114288741 + AT_rich Low_complexity Low_complexity 1 32 0 3 659 1545 47 0 0 chr9 9788585 9788777 -114287395 - L1Md_T LINE L1 0 6582 6391 3 659 1565 42 0 0 chr9 9788777 9788967 -114287205 + L1Md_T LINE L1 5919 6108 -474 3 659 407 281 17 9 chr9 9789298 9789413 -114286759 - PB1D10 SINE Alu 0 117 2 3 659 597 308 119 25 chr9 9790473 9790869 -114285303 - Tigger10 DNA Tigger -591 1252 820 3 659 181 262 61 76 chr9 9790935 9791001 -114285171 + L2b LINE L2 3101 3165 -210 3 659 305 338 117 22 chr9 9791424 9791654 -114284518 - Tigger10 DNA Tigger -1100 743 492 3 659 235 372 67 44 chr9 9792838 9793018 -114283154 + MLT1H1 LTR MaLR 26 209 -346 3 659 276 314 65 14 chr9 9793553 9793692 -114282480 + MLT1H1-int LTR MaLR 335 480 -929 3 659 333 279 36 84 chr9 9794747 9794997 -114281175 - L1M3f LINE L1 -1012 5313 5076 3 659 243 0 0 0 chr9 9795022 9795049 -114281123 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 659 804 271 52 83 chr9 9795260 9795707 -114280465 - L1M3f LINE L1 -1368 4957 4525 3 659 396 0 0 0 chr9 9795988 9796032 -114280140 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 659 227 132 75 0 chr9 9796057 9796110 -114280062 - L1M5 LINE L1 -2202 3944 3888 3 659 1028 129 0 0 chr9 9796195 9796342 -114279830 - B1_Mus1 SINE Alu -1 147 1 3 659 6796 137 16 12 chr9 9796545 9798013 -114278159 - Lx LINE L1 -4 6650 5175 4 659 1454 161 4 0 chr9 9798016 9798271 -114277901 + Lx LINE L1 4932 5187 -696 4 659 251 261 15 0 chr9 9798375 9798440 -114277732 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 659 438 265 10 30 chr9 9798471 9798572 -114277600 - B4A SINE B4 -1 291 193 4 659 231 320 0 0 chr9 9798613 9798691 -114277481 - B4 SINE B4 -210 82 5 4 659 875 252 114 63 chr9 9798697 9799328 -114276844 - L1M3f LINE L1 -2391 3934 3272 3 659 862 185 140 6 chr9 9799452 9799631 -114276541 - B3 SINE B2 -10 206 4 4 659 257 322 85 11 chr9 9799719 9799813 -114276359 - L1M3f LINE L1 -4642 686 586 3 659 306 316 37 42 chr9 9801300 9801419 -114274753 - B1F SINE Alu -23 126 7 4 659 1661 204 66 3 chr9 9801645 9801979 -114274193 + ORR1B2 LTR MaLR 13 367 0 4 659 23 33 0 0 chr9 9802048 9802078 -114274094 + AT_rich Low_complexity Low_complexity 1 30 0 4 659 244 245 27 36 chr9 9802396 9802412 -114273760 + (TA)n Simple_repeat Simple_repeat 2 18 0 4 659 195 42 0 0 chr9 9802412 9802436 -114273736 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 659 244 245 27 36 chr9 9802436 9802529 -114273643 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 659 261 356 11 44 chr9 9805536 9805627 -114270545 + MLT1H LTR MaLR 383 470 -79 4 659 476 269 48 34 chr9 9805704 9805850 -114270322 + Lx6 LINE L1 7028 7175 -285 4 659 334 266 26 0 chr9 9805829 9805942 -114270230 + Lx6 LINE L1 7318 7433 -27 4 659 183 156 0 0 chr9 9805944 9805976 -114270196 + (TAA)n Simple_repeat Simple_repeat 3 34 0 4 659 475 314 211 32 chr9 9806076 9806445 -114269727 + MLT1H LTR MaLR 71 506 -43 4 659 198 26 50 25 chr9 9806736 9806776 -114269396 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 4 659 899 314 23 8 chr9 9806830 9807087 -114269085 - B4 SINE B4 -24 268 8 4 659 1283 121 11 0 chr9 9807491 9807681 -114268491 + B2_Mm2 SINE B2 1 192 -3 4 659 1262 190 53 41 chr9 9811153 9811494 -114264678 + RMER17C LTR ERVK 66 410 0 4 659 2188 191 120 38 chr9 9811495 9812046 -114264126 + RMER17C-int LTR ERVK 1 596 -2642 4 659 337 146 69 58 chr9 9812208 9812295 -114263877 + RMER17C-int LTR ERVK 597 684 -2554 4 659 296 127 18 0 chr9 9812373 9812428 -114263744 + (CCCCCT)n Simple_repeat Simple_repeat 1 56 0 4 659 8803 140 57 73 chr9 9812602 9814067 -114262105 + RMER17C-int LTR ERVK 1437 2869 -369 4 659 360 0 0 0 chr9 9814067 9814107 -114262065 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 659 8803 140 57 73 chr9 9814107 9814472 -114261700 + RMER17C-int LTR ERVK 2870 3237 -1 4 659 2024 116 6 134 chr9 9814472 9814942 -114261230 + RMER17C LTR ERVK 1 410 0 4 659 699 311 90 20 chr9 9815302 9815647 -114260525 + MER57D LTR ERV1 27 395 -16 4 659 261 0 0 0 chr9 9815745 9815774 -114260398 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 659 251 303 0 0 chr9 9815828 9815894 -114260278 + ID_B1 SINE B4 80 145 -79 4 659 595 354 74 61 chr9 9816627 9817018 -114259154 - LTR16A LTR ERVL -54 397 2 4 659 399 314 64 36 chr9 9818381 9818601 -114257571 - B4A SINE B4 -8 284 64 4 659 202 224 0 17 chr9 9818602 9818661 -114257511 + T-rich Low_complexity Low_complexity 3 60 0 4 659 226 341 54 11 chr9 9820887 9820979 -114255193 - B1F1 SINE Alu -51 98 3 4 659 227 298 0 0 chr9 9820933 9820980 -114255192 - ID_B1 SINE B4 -95 129 83 4 659 528 59 0 0 chr9 9821263 9821331 -114254841 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 659 27143 113 31 12 chr9 9821663 9825054 -114251118 - L1_Mus2 LINE L1 0 6638 3145 4 659 285 29 0 0 chr9 9825054 9825088 -114251084 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 659 27143 150 48 16 chr9 9825088 9827769 -114248403 - L1_Mus2 LINE L1 -2739 3144 387 4 659 225 0 0 0 chr9 9829478 9829503 -114246669 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 660 222 37 0 0 chr9 9831254 9831281 -114244891 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 660 785 296 71 0 chr9 9831944 9832140 -114244032 + B3 SINE B2 2 211 -5 4 660 345 257 200 17 chr9 9834969 9835084 -114241088 + B3A SINE B2 3 138 -60 4 660 399 73 0 0 chr9 9835084 9835139 -114241033 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 660 29 0 0 0 chr9 9835239 9835268 -114240904 + AT_rich Low_complexity Low_complexity 1 29 0 4 660 30 27 0 0 chr9 9835375 9835412 -114240760 + AT_rich Low_complexity Low_complexity 1 37 0 4 660 432 147 0 0 chr9 9835686 9835761 -114240411 + (A)n Simple_repeat Simple_repeat 1 75 0 4 660 828 248 98 124 chr9 9835761 9836107 -114240065 - MTE2a LTR MaLR -40 339 3 4 660 690 263 5 15 chr9 9837226 9837427 -114238745 - Lx7 LINE L1 0 7696 7498 4 660 239 245 0 0 chr9 9837441 9837490 -114238682 + GA-rich Low_complexity Low_complexity 2 50 0 4 660 382 324 93 70 chr9 9838099 9838411 -114237761 - MLT1E2 LTR MaLR -6 621 303 4 660 3026 26 0 0 chr9 9838451 9838797 -114237375 + ORR1A0 LTR MaLR 1 346 0 4 660 2005 327 62 72 chr9 9840898 9841513 -114234659 + RodERV21-int LTR ERV1 2757 3351 -1640 4 660 3669 56 32 0 chr9 9841513 9841980 -114234192 + RLTR45 LTR ERVK 1 482 0 4 660 2005 327 62 72 chr9 9841980 9843479 -114232693 + RodERV21-int LTR ERV1 3352 4847 -144 4 660 4170 42 2 8 chr9 9843594 9844210 -114231962 - L1Md_F2 LINE L1 -461 6121 5509 4 660 3376 78 0 13 chr9 9844210 9844677 -114231495 + L1Md_F2 LINE L1 6122 6582 0 4 660 345 24 0 0 chr9 9845030 9845072 -114231100 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 660 378 369 38 13 chr9 9845134 9845370 -114230802 - L1ME1 LINE L1 -277 5902 5661 4 660 478 95 0 23 chr9 9845546 9845632 -114230540 + L1Md_F2 LINE L1 6487 6570 -12 4 660 185 0 40 0 chr9 9845635 9845660 -114230512 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 660 556 283 67 23 chr9 9846054 9846317 -114229855 - Lx8 LINE L1 -458 7015 6749 4 660 302 313 20 49 chr9 9846330 9846524 -114229648 - Lx8 LINE L1 -919 6725 6465 4 660 37553 30 1 6 chr9 9846782 9852982 -114223190 - L1Md_T LINE L1 0 6582 418 4 660 291 295 120 9 chr9 9853001 9853326 -114222846 - L1M2 LINE L1 -803 5340 4980 4 660 201 175 0 24 chr9 9853627 9853668 -114222504 + T-rich Low_complexity Low_complexity 3 42 0 4 660 1041 83 14 0 chr9 9853669 9853813 -114222359 - B1_Mus1 SINE Alu -1 147 2 4 660 203 0 0 36 chr9 9853859 9853887 -114222285 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 660 279 234 0 0 chr9 9854452 9854516 -114221656 - ID4 SINE ID -19 64 1 4 660 219 111 22 22 chr9 9855308 9855354 -114220818 + T-rich Low_complexity Low_complexity 2 47 0 4 660 206 105 0 26 chr9 9855637 9855676 -114220496 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 660 723 309 69 4 chr9 9855697 9855957 -114220215 - B4A SINE B4 -14 278 2 4 660 558 280 52 20 chr9 9856091 9856244 -114219928 - B3 SINE B2 -12 204 47 4 660 385 325 40 46 chr9 9860863 9861037 -114215135 + MIR3 SINE MIR 33 205 -3 4 660 31 0 0 24 chr9 9861524 9861548 -114214624 + AT_rich Low_complexity Low_complexity 1 24 0 4 660 771 211 205 0 chr9 9861548 9861719 -114214453 - B3 SINE B2 -9 207 2 4 660 31 0 0 24 chr9 9861719 9861736 -114214436 + AT_rich Low_complexity Low_complexity 1 17 0 4 660 3861 60 95 4 chr9 9861812 9862351 -114213821 + RLTR22_Mus LTR ERVK 1 588 -1220 4 660 6664 59 6 0 chr9 9862352 9863229 -114212943 + L1Md_F LINE L1 258 1139 -5380 4 660 15311 182 149 11 chr9 9863196 9867043 -114209129 + L1_Mur2 LINE L1 1204 5580 -297 4 660 8755 16 1 0 chr9 9867043 9868038 -114208134 + L1Md_A LINE L1 5587 6582 0 4 660 16107 73 4 4 chr9 9868038 9870296 -114205876 + L1Md_F2 LINE L1 3328 5586 -297 4 660 7598 43 14 43 chr9 9870296 9870741 -114205431 + L1Md_F2 LINE L1 5587 6032 -550 4 660 3868 86 74 4 chr9 9870741 9871268 -114204904 + LTRIS2 LTR ERV1 1 564 0 4 660 7598 43 14 43 chr9 9871268 9871833 -114204339 + L1Md_F2 LINE L1 6033 6567 -15 4 660 1540 117 43 0 chr9 9871845 9872101 -114204071 + RLTR22_Mur LTR ERVK 568 834 -1014 4 660 1424 158 35 16 chr9 9872307 9872564 -114203608 + RLTR22_Mus LTR ERVK 1543 1804 -4 4 660 23 0 0 0 chr9 9873464 9873487 -114202685 + AT_rich Low_complexity Low_complexity 1 23 0 4 660 339 25 0 0 chr9 9873883 9873923 -114202249 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 660 25 51 0 0 chr9 9874524 9874563 -114201609 + AT_rich Low_complexity Low_complexity 1 39 0 4 660 3791 117 33 5 chr9 9874789 9875372 -114200800 + L1_Mus3 LINE L1 6040 6638 0 4 660 197 242 103 29 chr9 9876579 9876647 -114199525 - MIRc SINE MIR -194 74 2 4 660 488 45 15 0 chr9 9877952 9878019 -114198153 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 660 3125 117 14 12 chr9 9878470 9878954 -114197218 + Lx LINE L1 6163 6647 -7 4 660 22 35 0 0 chr9 9878959 9878988 -114197184 + AT_rich Low_complexity Low_complexity 1 29 0 4 660 34 24 0 0 chr9 9879240 9879281 -114196891 + AT_rich Low_complexity Low_complexity 1 41 0 4 660 360 310 87 4 chr9 9879297 9879572 -114196600 + L1M2 LINE L1 2165 2462 -3681 4 660 1059 280 137 17 chr9 9879885 9881054 -114195118 + L1M2 LINE L1 3253 4562 -1581 4 660 619 323 100 16 chr9 9881304 9882012 -114194160 + L1_Mur3 LINE L1 3203 3970 -1910 4 660 611 248 61 43 chr9 9882009 9882338 -114193834 - L1MA6 LINE L1 -323 5977 5643 4 660 219 82 82 0 chr9 9882345 9882394 -114193778 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 660 25 65 0 0 chr9 9882445 9882491 -114193681 + AT_rich Low_complexity Low_complexity 1 46 0 4 660 21 0 0 0 chr9 9882559 9882580 -114193592 + AT_rich Low_complexity Low_complexity 1 21 0 4 660 414 0 0 0 chr9 9882850 9882896 -114193276 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 660 190 307 62 83 chr9 9882939 9883035 -114193137 + MIR SINE MIR 32 125 -83 4 660 183 205 0 0 chr9 9883508 9883547 -114192625 + (TATG)n Simple_repeat Simple_repeat 4 42 0 4 660 239 326 61 0 chr9 9883935 9884033 -114192139 + L2 LINE L2 1053 1156 -2263 4 660 21 36 0 0 chr9 9884069 9884097 -114192075 + AT_rich Low_complexity Low_complexity 1 28 0 4 660 528 303 122 60 chr9 9884284 9884573 -114191599 + B4 SINE B4 2 270 -22 4 660 234 340 85 55 chr9 9885438 9885637 -114190535 - MLT1B LTR MaLR -185 205 1 4 660 234 116 0 0 chr9 9885706 9885749 -114190423 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 660 716 305 62 27 chr9 9885763 9886100 -114190072 - BLACKJACK DNA AcHobo -1568 1376 1028 4 660 300 53 0 0 chr9 9886202 9886240 -114189932 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 660 2220 161 5 65 chr9 9886244 9886677 -114189495 - RLTR26 LTR ERVK -6 636 230 4 660 2124 109 14 49 chr9 9887471 9887818 -114188354 + IAPLTR1a_Mm LTR ERVK 1 335 -2 5 660 10487 95 90 26 chr9 9887848 9890441 -114185731 + IAPEz-int LTR ERVK 17 2774 -3707 5 660 2977 30 0 8 chr9 9890439 9890813 -114185359 + IAPEz-int LTR ERVK 4001 4371 -2110 5 660 5190 78 33 12 chr9 9890787 9891542 -114184630 + IAPEz-int LTR ERVK 5709 6479 -2 5 660 2130 111 14 49 chr9 9891544 9891893 -114184279 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 660 462 36 0 0 chr9 9892790 9892846 -114183326 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 660 845 252 37 34 chr9 9892919 9893215 -114182957 - Lx6 LINE L1 -26 7434 7138 5 660 405 259 106 11 chr9 9893244 9893424 -114182748 - Lx8 LINE L1 0 7473 7277 5 660 819 256 113 48 chr9 9893447 9893738 -114182434 + MTD LTR MaLR 1 310 -109 5 660 477 294 10 122 chr9 9893728 9893933 -114182239 + MTD LTR MaLR 238 419 0 5 660 412 277 20 60 chr9 9893935 9894085 -114182087 - Lx8 LINE L1 -211 7262 7119 5 660 258 236 0 0 chr9 9894104 9894159 -114182013 + Lx8 LINE L1 6720 6774 -699 5 660 330 284 46 0 chr9 9894335 9894444 -114181728 + Lx8 LINE L1 6940 7053 -420 5 660 970 318 49 53 chr9 9895140 9895668 -114180504 - RMER5 LTR ERV1 -2 532 7 5 660 1328 226 42 159 chr9 9895937 9896416 -114179756 - RLTR23 LTR ERV1 0 430 8 5 660 240 286 19 0 chr9 9896431 9896536 -114179636 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 660 276 100 0 0 chr9 9896550 9896590 -114179582 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 660 21 0 0 0 chr9 9897264 9897285 -114178887 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 444 302 21 21 chr9 9897513 9897699 -114178473 - B3A SINE B2 -12 186 1 5 660 214 305 22 126 chr9 9897763 9897898 -114178274 - L2c LINE L2 -1 3386 3266 5 660 244 259 0 0 chr9 9898591 9898645 -114177527 + T-rich Low_complexity Low_complexity 1 54 0 5 660 344 277 0 0 chr9 9898669 9898734 -114177438 - ID_B1 SINE B4 -25 199 135 5 660 1858 112 21 7 chr9 9898882 9899171 -114177001 - L1_Mus3 LINE L1 0 6638 6346 5 660 253 333 14 0 chr9 9901384 9901456 -114174716 - ID4_ SINE ID 0 83 11 5 660 221 75 25 0 chr9 9901476 9901516 -114174656 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 660 4353 213 48 43 chr9 9901542 9902587 -114173585 - RMER1B Other Other -9 1057 8 5 660 388 351 30 15 chr9 9902633 9902766 -114173406 - B1F1 SINE Alu -13 136 2 5 660 341 345 7 87 chr9 9902766 9902782 -114173390 - ID_B1 SINE B4 -13 211 75 5 660 4068 79 3 65 chr9 9902871 9903482 -114172690 + L1_Mus2 LINE L1 5994 6566 0 5 660 641 153 30 8 chr9 9904758 9904890 -114171282 - Lx2 LINE L1 -572 5305 5171 5 660 7704 127 28 34 chr9 9904900 9905582 -114170590 + Lx2 LINE L1 5340 5969 -1028 5 660 1446 0 0 17 chr9 9905582 9905759 -114170413 + (GAA)n Simple_repeat Simple_repeat 1 174 0 5 660 7704 122 38 52 chr9 9905759 9906750 -114169422 + Lx2 LINE L1 5970 6997 0 5 660 29 28 0 0 chr9 9907303 9907339 -114168833 + AT_rich Low_complexity Low_complexity 1 36 0 5 660 440 289 3 0 chr9 9908847 9909152 -114167020 + (TA)n Simple_repeat Simple_repeat 1 306 0 5 660 23 33 0 0 chr9 9909871 9909901 -114166271 + AT_rich Low_complexity Low_complexity 1 30 0 5 660 464 314 11 17 chr9 9910668 9910843 -114165329 + (TCCA)n Simple_repeat Simple_repeat 4 177 0 5 660 844 270 38 129 chr9 9911075 9911492 -114164680 - MTE2a LTR MaLR 0 379 1 5 660 1056 303 45 39 chr9 9912039 9912506 -114163666 + RMER5 LTR ERV1 65 534 0 5 660 28 48 0 0 chr9 9912542 9912584 -114163588 + AT_rich Low_complexity Low_complexity 1 42 0 5 660 25 0 0 0 chr9 9913239 9913264 -114162908 + AT_rich Low_complexity Low_complexity 1 25 0 5 660 343 209 0 18 chr9 9913878 9913990 -114162182 + (TA)n Simple_repeat Simple_repeat 2 111 0 5 660 2676 251 59 81 chr9 9915058 9915984 -114160188 - RMER1C Other Other -3 1339 434 5 660 245 257 13 51 chr9 9916054 9916132 -114160040 - RMER1C Other Other -1057 285 211 5 660 2435 201 100 11 chr9 9916214 9916773 -114159399 - RLTR17 LTR ERVK -83 609 1 5 660 339 265 0 0 chr9 9917478 9917580 -114158592 + (TA)n Simple_repeat Simple_repeat 1 102 0 5 660 218 171 14 0 chr9 9917977 9918047 -114158125 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 5 660 1139 81 0 13 chr9 9918052 9918202 -114157970 - B1_Mus1 SINE Alu 0 148 1 5 660 1324 87 11 37 chr9 9918703 9918894 -114157278 + B2_Mm2 SINE B2 2 187 -8 5 660 189 0 0 0 chr9 9918963 9918984 -114157188 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 660 422 131 12 0 chr9 9919613 9919697 -114156475 + L1_Mus3 LINE L1 6553 6637 -1 5 660 414 252 22 3 chr9 9919929 9920044 -114156128 + PB1D9 SINE Alu 1 122 -27 5 660 216 0 0 0 chr9 9920330 9920354 -114155818 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 660 906 73 0 8 chr9 9921482 9921607 -114154565 + B1_Mm SINE Alu 23 146 -1 5 660 197 33 33 0 chr9 9921607 9921637 -114154535 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 660 1899 57 90 24 chr9 9921719 9922007 -114154165 + IAPLTR2b LTR ERVK 1 307 -20 5 660 15370 98 32 28 chr9 9922024 9924479 -114151693 + IAPEz-int LTR ERVK 1 2665 -3816 5 660 11252 57 3 0 chr9 9924475 9925920 -114150252 + IAPEz-int LTR ERVK 4067 5515 -966 5 660 6690 73 12 16 chr9 9926727 9927685 -114148487 + IAPEz-int LTR ERVK 5527 6481 0 5 660 2072 55 34 24 chr9 9927685 9927982 -114148190 + IAPLTR2b LTR ERVK 1 300 -27 5 660 1304 82 60 0 chr9 9928166 9928378 -114147794 - L1_Mus1 LINE L1 0 6567 6367 5 660 21 0 0 0 chr9 9928445 9928466 -114147706 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 1049 291 78 60 chr9 9928808 9929294 -114146878 + RMER5 LTR ERV1 33 527 -7 5 660 2973 58 3 0 chr9 9930160 9930538 -114145634 + L1_Mus1 LINE L1 6189 6567 0 5 660 3834 250 87 28 chr9 9930915 9932185 -114143987 + Lx9 LINE L1 6300 7644 0 5 660 1732 181 111 16 chr9 9932336 9932713 -114143459 + MTC LTR MaLR 1 413 -8 5 660 351 0 0 0 chr9 9933243 9933282 -114142890 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 660 1028 82 0 0 chr9 9933740 9933875 -114142297 + B1_Mus1 SINE Alu 14 148 0 5 660 225 0 0 0 chr9 9933875 9933900 -114142272 + (A)n Simple_repeat Simple_repeat 1 25 0 5 660 705 229 13 34 chr9 9934261 9934410 -114141762 - B1_Mus1 SINE Alu -2 146 1 5 660 267 309 79 158 chr9 9935401 9935666 -114140506 + MTE2a LTR MaLR 1 244 -135 5 660 327 275 126 29 chr9 9935682 9935888 -114140284 + L1MB1 LINE L1 5934 6159 -30 5 660 690 13 0 0 chr9 9936449 9936528 -114139644 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 660 22 35 0 0 chr9 9937859 9937888 -114138284 + AT_rich Low_complexity Low_complexity 1 29 0 5 660 696 11 32 0 chr9 9938310 9938403 -114137769 + (GA)n Simple_repeat Simple_repeat 1 96 0 5 660 435 38 0 0 chr9 9938487 9938540 -114137632 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 660 2414 91 19 3 chr9 9938952 9939316 -114136856 - L1_Mm LINE L1 -1250 4633 4264 5 660 4566 111 1 12 chr9 9939314 9940061 -114136111 - MusHAL1 LINE L1 -515 2197 1459 5 660 439 289 60 76 chr9 9941044 9941318 -114134854 + RLTR20D LTR ERVK 51 356 -336 5 660 2549 51 0 0 chr9 9941376 9941708 -114134464 - L1Md_F2 LINE L1 -338 5545 5214 5 660 235 118 0 0 chr9 9941708 9941742 -114134430 + L1Md_F2 LINE L1 5552 5585 -298 5 660 8053 47 1 1 chr9 9941743 9942727 -114133445 + L1Md_F2 LINE L1 5587 6570 -12 5 660 854 150 0 7 chr9 9942740 9942894 -114133278 + CT-rich Low_complexity Low_complexity 4 156 0 5 660 22 35 0 0 chr9 9944137 9944166 -114132006 + AT_rich Low_complexity Low_complexity 1 29 0 5 660 673 178 13 0 chr9 9944166 9944323 -114131849 + (TA)n Simple_repeat Simple_repeat 2 160 0 5 660 484 301 80 27 chr9 9944387 9944537 -114131635 - RSINE1 SINE B4 0 165 8 5 660 32 43 0 0 chr9 9945226 9945272 -114130900 + AT_rich Low_complexity Low_complexity 1 46 0 5 660 1970 249 55 105 chr9 9946022 9946848 -114129324 + RMER17B LTR ERVK 1 784 -174 5 660 669 184 18 106 chr9 9947205 9947375 -114128797 + ORR1C1 LTR MaLR 224 378 0 5 660 23 54 0 0 chr9 9948370 9948407 -114127765 + AT_rich Low_complexity Low_complexity 1 37 0 5 660 207 0 0 0 chr9 9948427 9948450 -114127722 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 660 200 360 35 0 chr9 9949503 9949589 -114126583 + MIR3 SINE MIR 87 175 -33 5 660 770 276 137 20 chr9 9949823 9950099 -114126073 + ORR1D2 LTR MaLR 9 317 -53 5 660 371 195 8 42 chr9 9950149 9950267 -114125905 - Lx9 LINE L1 0 7644 7531 5 660 288 0 0 0 chr9 9950275 9950307 -114125865 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 660 21 0 0 0 chr9 9950400 9950421 -114125751 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 467 172 23 0 chr9 9950588 9950675 -114125497 - Lx9 LINE L1 -163 7481 7393 5 660 243 163 122 0 chr9 9950681 9950730 -114125442 + ORR1D2 LTR MaLR 301 355 -4 5 660 636 294 48 26 chr9 9951064 9951213 -114124959 - Lx8 LINE L1 -364 7109 6961 5 660 207 0 0 0 chr9 9951213 9951236 -114124936 + (GTGTG)n Simple_repeat Simple_repeat 1 23 0 5 660 636 294 48 26 chr9 9951236 9951313 -114124859 - Lx8 LINE L1 -513 6960 6878 5 660 483 359 7 7 chr9 9951344 9951498 -114124674 + Lx8 LINE L1 7166 7319 -154 5 660 1077 244 167 85 chr9 9951506 9951972 -114124200 + MT2A LTR ERVL 1 601 0 5 660 21 0 0 0 chr9 9952134 9952155 -114124017 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 1147 179 140 65 chr9 9953256 9953578 -114122594 + RMER10A LTR ERVL 1 346 -96 5 660 1074 168 25 10 chr9 9953574 9953773 -114122399 - ORR1B1 LTR MaLR -90 304 103 5 660 1131 260 21 40 chr9 9953776 9954104 -114122068 - ORR1D2 LTR MaLR -44 326 5 5 660 1233 323 39 5 chr9 9954199 9954588 -114121584 - Tigger7 DNA MER2_type -1887 604 203 5 660 272 208 0 0 chr9 9954581 9954634 -114121538 - ORR1B1 LTR MaLR -325 53 1 5 660 207 0 0 0 chr9 9955999 9956022 -114120150 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 5 660 249 241 37 0 chr9 9956159 9956213 -114119959 + MLT1A0 LTR MaLR 249 304 -61 5 660 195 69 0 0 chr9 9956926 9956955 -114119217 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 660 562 174 7 7 chr9 9957415 9957554 -114118618 + (CA)n Simple_repeat Simple_repeat 1 139 0 5 660 23 68 0 0 chr9 9957766 9957810 -114118362 + AT_rich Low_complexity Low_complexity 1 44 0 5 660 396 135 54 0 chr9 9959619 9959730 -114116442 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 660 842 316 151 17 chr9 9959750 9960268 -114115904 - Lx8 LINE L1 0 7473 6887 5 661 323 338 58 0 chr9 9961786 9961925 -114114247 + RSINE1 SINE B4 3 149 -16 5 661 8372 44 1 0 chr9 9962163 9963769 -114112403 - L1Md_F2 LINE L1 -2 6580 4974 5 661 432 0 0 0 chr9 9964513 9964561 -114111611 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 661 242 286 107 0 chr9 9964896 9964980 -114111192 - PB1D7 SINE Alu -6 114 22 5 661 577 326 0 0 chr9 9966815 9966956 -114109216 - RSINE1 SINE B4 -22 143 3 6 661 777 295 16 60 chr9 9966956 9967197 -114108975 - B4A SINE B4 -62 230 1 6 661 425 289 26 0 chr9 9967447 9967561 -114108611 + RSINE1 SINE B4 5 121 -44 6 661 432 0 0 0 chr9 9967563 9967611 -114108561 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 661 1112 226 18 23 chr9 9967970 9968187 -114107985 - B3 SINE B2 0 216 1 6 661 740 302 124 11 chr9 9972178 9972526 -114103646 + MTD LTR MaLR 18 404 -15 6 661 804 96 0 0 chr9 9973075 9973190 -114102982 + (TA)n Simple_repeat Simple_repeat 2 116 0 6 661 5630 63 11 3 chr9 9973337 9974057 -114102115 + L1Md_F2 LINE L1 5833 6558 -24 6 661 279 0 0 0 chr9 9974057 9974088 -114102084 + (TAA)n Simple_repeat Simple_repeat 3 33 0 6 661 1733 188 42 1 chr9 9975474 9975833 -114100339 + MTC LTR MaLR 8 407 -12 6 661 906 261 35 35 chr9 9975846 9976188 -114099984 - RLTR15 LTR ERVK -17 342 1 6 661 772 20 30 0 chr9 9976964 9977065 -114099107 + (TTCTC)n Simple_repeat Simple_repeat 2 105 0 6 661 200 42 0 0 chr9 9977065 9977089 -114099083 + (TTTC)n Simple_repeat Simple_repeat 4 27 0 6 661 409 161 115 31 chr9 9977089 9977112 -114099060 - B1_Mur3 SINE Alu 0 149 127 6 661 387 0 0 0 chr9 9977112 9977155 -114099017 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 661 409 206 99 41 chr9 9977155 9977275 -114098897 - B1_Mur3 SINE Alu -23 126 3 6 661 252 77 0 0 chr9 9977412 9977451 -114098721 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 6 661 206 255 0 0 chr9 9977553 9977604 -114098568 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 6 661 824 104 152 0 chr9 9978132 9978257 -114097915 + B1_Mus1 SINE Alu 5 148 0 6 661 313 99 0 40 chr9 9978262 9978336 -114097836 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 6 661 477 298 80 0 chr9 9978846 9978997 -114097175 + RSINE1 SINE B4 3 165 0 6 661 325 220 26 7 chr9 9979003 9979154 -114097018 + (CA)n Simple_repeat Simple_repeat 1 154 0 6 661 855 115 0 0 chr9 9980449 9980579 -114095593 + (TTC)n Simple_repeat Simple_repeat 2 131 0 6 661 260 276 11 11 chr9 9981366 9981454 -114094718 + CT-rich Low_complexity Low_complexity 4 91 0 6 661 807 147 12 6 chr9 9982719 9982883 -114093289 + GA-rich Low_complexity Low_complexity 3 167 0 6 661 365 337 160 5 chr9 9983350 9983544 -114092628 - MER58A DNA MER1_type 0 224 1 6 661 1070 97 14 0 chr9 9983733 9983878 -114092294 + B1_Mus2 SINE Alu 1 147 0 6 661 405 39 0 0 chr9 9983878 9983929 -114092243 + (A)n Simple_repeat Simple_repeat 1 51 0 6 661 269 314 79 51 chr9 9984909 9985087 -114091085 - L1M5 LINE L1 -469 5655 5473 6 661 452 284 146 41 chr9 9985087 9985333 -114090839 + Lx7 LINE L1 7096 7367 -329 6 661 495 169 0 0 chr9 9985347 9985471 -114090701 + GA-rich Low_complexity Low_complexity 1 124 0 6 661 2212 121 9 3 chr9 9985476 9985815 -114090357 + Lx LINE L1 6311 6651 -3 6 661 279 0 0 0 chr9 9986221 9986252 -114089920 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 661 232 290 89 10 chr9 9986610 9986711 -114089461 + RSINE1 SINE B4 3 111 -54 6 661 28 0 0 0 chr9 9986867 9986895 -114089277 + AT_rich Low_complexity Low_complexity 1 28 0 6 661 1156 203 130 0 chr9 9988105 9988351 -114087821 + Lx5 LINE L1 6770 7047 -3 6 661 2887 64 5 13 chr9 9990739 9991126 -114085046 + L1Md_F2 LINE L1 6165 6548 -34 6 661 365 53 0 18 chr9 9991126 9991183 -114084989 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 6 661 991 140 6 11 chr9 9991299 9991480 -114084692 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 661 260 257 98 10 chr9 9991541 9991643 -114084529 - MIR SINE MIR -25 237 127 6 661 24 0 0 0 chr9 9992813 9992837 -114083335 + AT_rich Low_complexity Low_complexity 1 24 0 6 661 31 76 0 0 chr9 9993210 9993276 -114082896 + AT_rich Low_complexity Low_complexity 1 66 0 6 661 24 32 0 0 chr9 9995015 9995046 -114081126 + AT_rich Low_complexity Low_complexity 1 31 0 6 661 414 100 0 0 chr9 9996942 9997002 -114079170 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 6 661 437 138 0 0 chr9 9997121 9997186 -114078986 - MTC LTR MaLR 0 421 357 6 661 900 128 0 41 chr9 9997334 9997481 -114078691 - B1_Mur3 SINE Alu -8 141 1 6 661 515 346 18 6 chr9 9997604 9997767 -114078405 + RSINE1 SINE B4 1 165 0 6 661 349 276 57 10 chr9 9997891 9998092 -114078080 + L1M5 LINE L1 4965 5186 -960 6 661 593 61 12 0 chr9 9999068 9999150 -114077022 + (TTTTC)n Simple_repeat Simple_repeat 5 87 0 6 661 921 299 68 45 chr9 10000244 10000580 -114075592 - MTD LTR MaLR -22 397 54 1 661 264 200 0 0 chr9 10004714 10004769 -114071403 + GA-rich Low_complexity Low_complexity 3 57 0 2 661 1760 133 86 3 chr9 10005751 10006053 -114070119 + IAPEY3_LTR LTR ERVK 1 327 -5 3 661 938 176 123 20 chr9 10007016 10007219 -114068953 + URR1A DNA MER1_type 3 226 0 4 661 394 319 126 69 chr9 10007321 10007671 -114068501 - L3b LINE CR1 -44 438 69 5 661 234 169 0 0 chr9 10007898 10007963 -114068209 + T-rich Low_complexity Low_complexity 1 65 0 6 661 513 0 0 0 chr9 10009335 10009392 -114066780 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 661 321 125 0 0 chr9 10010683 10010739 -114065433 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 661 661 347 55 19 chr9 10012038 10012294 -114063878 - B4 SINE B4 0 292 28 9 661 350 380 24 49 chr9 10013163 10013178 -114062994 - B3 SINE B2 -2 214 201 1 661 240 111 0 0 chr9 10013178 10013214 -114062958 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 1 661 502 370 2 36 chr9 10013214 10013403 -114062769 - B3A SINE B2 -16 200 15 1 661 22 0 0 0 chr9 10013470 10013492 -114062680 + AT_rich Low_complexity Low_complexity 1 22 0 1 661 21 0 0 0 chr9 10013501 10013522 -114062650 + AT_rich Low_complexity Low_complexity 1 21 0 1 661 803 279 19 47 chr9 10013552 10013766 -114062406 - B3A SINE B2 -2 214 7 1 661 580 311 87 16 chr9 10015722 10015964 -114060208 + Arthur1C DNA Tip100 23 281 -82 1 661 595 283 19 92 chr9 10018328 10018534 -114057638 + MTE2a LTR MaLR 6 196 -183 1 661 1054 177 81 0 chr9 10020215 10020424 -114055748 - URR1A DNA MER1_type 0 226 1 1 661 33 0 0 0 chr9 10020993 10021026 -114055146 + AT_rich Low_complexity Low_complexity 1 33 0 1 661 5584 40 0 0 chr9 10021259 10021925 -114054247 - L1Md_T LINE L1 0 6582 5917 1 661 3151 14 0 0 chr9 10021925 10022284 -114053888 + L1Md_T LINE L1 5596 5954 -628 1 661 711 335 61 4 chr9 10022723 10022969 -114053203 + B4 SINE B4 5 264 -28 2 661 297 0 0 0 chr9 10022989 10023022 -114053150 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 661 297 0 0 0 chr9 10023022 10023054 -114053118 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 661 252 59 0 0 chr9 10023054 10023088 -114053084 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 661 193 313 154 13 chr9 10023725 10023874 -114052298 - MIRb SINE MIR -3 265 96 2 661 211 192 0 37 chr9 10023964 10024018 -114052154 + T-rich Low_complexity Low_complexity 2 53 0 2 661 196 204 41 0 chr9 10024021 10024070 -114052102 + L2c LINE L2 3023 3073 -314 2 661 561 307 179 17 chr9 10025572 10025807 -114050365 + B4A SINE B4 2 274 -18 2 661 203 246 15 0 chr9 10026151 10026216 -114049956 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 661 478 230 6 6 chr9 10026235 10026410 -114049762 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 661 637 335 42 27 chr9 10026445 10026706 -114049466 + B4 SINE B4 6 270 -22 2 661 29287 94 11 2 chr9 10027798 10029575 -114046597 - L1_Mus2 LINE L1 -1 6565 4737 3 661 534 57 0 0 chr9 10029575 10029645 -114046527 + (TTG)n Simple_repeat Simple_repeat 2 71 0 3 661 29287 145 32 27 chr9 10029645 10034164 -114042008 - L1_Mus2 LINE L1 -1147 4736 229 3 661 333 278 99 160 chr9 10034208 10034653 -114041519 + RMER10A LTR ERVL 7 424 -18 3 661 538 330 10 36 chr9 10034972 10035167 -114041005 - B3A SINE B2 -7 191 2 3 661 184 290 16 31 chr9 10035666 10035730 -114040442 - MER5A DNA MER1_type -84 105 43 3 661 203 340 46 26 chr9 10036589 10036740 -114039432 - MIR SINE MIR -46 216 63 3 661 3162 110 37 2 chr9 10037389 10037871 -114038301 + Lx LINE L1 6127 6625 -29 3 661 9319 92 24 52 chr9 10037870 10039437 -114036735 + Lx3_Mus LINE L1 5497 7009 0 3 661 21 57 0 0 chr9 10039437 10039472 -114036700 + AT_rich Low_complexity Low_complexity 1 35 0 3 661 333 269 21 0 chr9 10039620 10039715 -114036457 + B1F SINE Alu 27 128 -21 3 661 336 24 0 0 chr9 10039722 10039763 -114036409 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 661 336 200 9 19 chr9 10040414 10040521 -114035651 + GA-rich Low_complexity Low_complexity 2 107 0 4 661 378 0 0 0 chr9 10041214 10041256 -114034916 + (TCCTG)n Simple_repeat Simple_repeat 2 43 0 4 661 319 236 18 9 chr9 10041669 10041780 -114034392 + (TG)n Simple_repeat Simple_repeat 1 112 0 4 661 579 66 0 0 chr9 10042555 10042631 -114033541 + (T)n Simple_repeat Simple_repeat 1 76 0 4 661 246 373 80 40 chr9 10042765 10042966 -114033206 + LTR16E2 LTR ERVL 356 564 -4 4 661 361 309 106 25 chr9 10043935 10044134 -114032038 - B3 SINE B2 0 216 2 4 661 1373 316 98 23 chr9 10045008 10045711 -114030461 + Lx8 LINE L1 6502 7257 -216 4 661 294 134 29 15 chr9 10046090 10046158 -114030014 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 661 420 225 133 26 chr9 10046287 10046466 -114029706 - ORR1C2 LTR MaLR 0 367 160 4 661 431 111 60 10 chr9 10046471 10046571 -114029601 + GA-rich Low_complexity Low_complexity 3 107 0 5 661 893 225 16 0 chr9 10046571 10046762 -114029410 - ORR1C2 LTR MaLR -190 194 1 4 661 5273 70 14 4 chr9 10046788 10047500 -114028672 - L1Md_F2 LINE L1 -2 6580 5862 5 661 271 286 0 0 chr9 10048192 10048255 -114027917 + (TATG)n Simple_repeat Simple_repeat 4 66 0 5 661 491 285 264 60 chr9 10048266 10048502 -114027670 - B4A SINE B4 0 292 9 5 661 513 300 46 124 chr9 10049797 10049955 -114026217 + B3A SINE B2 6 164 -34 5 661 279 0 0 0 chr9 10049955 10049986 -114026186 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 661 252 300 46 124 chr9 10049986 10050021 -114026151 + B2_Mm2 SINE B2 159 184 -11 5 661 5583 230 55 47 chr9 10050601 10051081 -114025091 + Lx7 LINE L1 6220 6720 -976 5 661 4918 34 14 2 chr9 10051081 10051672 -114024500 + L1Md_F3 LINE L1 5986 6583 -1 5 661 5583 230 55 47 chr9 10051672 10052502 -114023670 + Lx7 LINE L1 6721 7550 -146 5 661 251 114 0 22 chr9 10052502 10052547 -114023625 + (TAG)n Simple_repeat Simple_repeat 1 44 0 5 661 5583 230 55 47 chr9 10052547 10052700 -114023472 + Lx7 LINE L1 7551 7696 0 5 661 411 38 0 0 chr9 10053931 10053984 -114022188 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 661 764 313 161 30 chr9 10054173 10055242 -114020930 + L1MA6 LINE L1 4164 5372 -771 6 661 224 304 86 31 chr9 10055306 10055416 -114020756 + B2_Mm1a SINE B2 43 167 -49 6 661 730 269 124 22 chr9 10055416 10055877 -114020295 + L1MA6 LINE L1 5500 6008 -292 6 661 854 244 28 11 chr9 10056003 10056185 -114019987 + B3 SINE B2 1 185 -31 6 661 553 340 13 0 chr9 10057613 10057772 -114018400 - B3A SINE B2 -29 169 9 6 661 520 301 0 67 chr9 10058385 10058563 -114017609 + B4 SINE B4 116 281 -11 6 661 257 372 107 8 chr9 10059134 10059256 -114016916 + B3A SINE B2 43 176 -22 6 661 31204 84 12 31 chr9 10060040 10065373 -114010799 + L1Md_F2 LINE L1 353 5586 -297 6 661 6968 77 31 19 chr9 10065373 10066345 -114009827 + L1Md_F2 LINE L1 5587 6570 -12 6 661 271 248 120 60 chr9 10067024 10067157 -114009015 - LTR16A1 LTR ERVL -2 454 314 6 661 180 268 67 79 chr9 10067476 10067565 -114008607 - MIR SINE MIR -90 172 85 6 661 22 35 0 0 chr9 10068186 10068215 -114007957 + AT_rich Low_complexity Low_complexity 1 29 0 6 661 267 250 12 12 chr9 10069065 10069146 -114007026 + Lx7 LINE L1 7612 7692 -4 7 661 2842 237 71 40 chr9 10069187 10069745 -114006427 + Lx5 LINE L1 5481 6080 -970 7 661 1159 44 13 0 chr9 10069745 10069903 -114006269 + (GA)n Simple_repeat Simple_repeat 1 160 0 7 661 2842 286 124 68 chr9 10069903 10070799 -114005373 + Lx5 LINE L1 6081 7016 -34 7 661 67 42 0 0 chr9 10071107 10071202 -114004970 + AT_rich Low_complexity Low_complexity 1 95 0 7 661 418 329 0 0 chr9 10071204 10071341 -114004831 + (TG)n Simple_repeat Simple_repeat 2 138 0 7 661 353 292 30 72 chr9 10071346 10071512 -114004660 - B3A SINE B2 -16 182 24 7 661 340 118 29 0 chr9 10074258 10074326 -114001846 + (TATG)n Simple_repeat Simple_repeat 1 70 0 7 661 1122 284 46 20 chr9 10074759 10075151 -114001021 - RLTR11A2 LTR ERVK -11 516 115 7 661 23 33 0 0 chr9 10075925 10075955 -114000217 + AT_rich Low_complexity Low_complexity 1 30 0 7 661 3074 144 32 23 chr9 10076900 10077425 -113998747 - Lx2 LINE L1 0 6997 6468 7 661 2251 146 13 5 chr9 10077429 10077816 -113998356 + Lx2 LINE L1 6075 6464 -533 7 661 2621 204 82 2 chr9 10078009 10078545 -113997627 + Lx5 LINE L1 6463 7041 -9 8 661 333 0 0 0 chr9 10079370 10079407 -113996765 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 661 355 153 92 0 chr9 10079512 10079610 -113996562 + Lx5 LINE L1 6944 7050 0 8 661 4425 101 24 7 chr9 10079810 10080051 -113996121 - L1VL1 LINE L1 -2505 1193 950 8 661 297 0 0 0 chr9 10080051 10080084 -113996088 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 661 4425 123 138 48 chr9 10080084 10080761 -113995411 - L1VL1 LINE L1 -5473 949 200 8 661 300 256 12 37 chr9 10081237 10081318 -113994854 - PB1D10 SINE Alu -12 105 27 8 661 228 311 72 42 chr9 10081437 10081603 -113994569 + MER58A DNA MER1_type 48 219 -5 8 661 321 323 59 29 chr9 10081921 10082125 -113994047 - B3 SINE B2 -6 210 1 8 661 513 325 6 6 chr9 10082234 10082398 -113993774 - RSINE1 SINE B4 0 165 2 8 661 296 293 187 1 chr9 10084436 10084619 -113991553 - MIRb SINE MIR -6 256 46 8 661 1221 99 0 0 chr9 10084857 10085253 -113990919 + (GAA)n Simple_repeat Simple_repeat 1 396 0 9 661 403 231 153 63 chr9 10086341 10086595 -113989577 + Lx8 LINE L1 7197 7473 0 9 661 390 169 25 0 chr9 10087159 10087277 -113988895 + GA-rich Low_complexity Low_complexity 2 122 0 9 661 23 0 0 0 chr9 10088116 10088139 -113988033 + AT_rich Low_complexity Low_complexity 1 23 0 9 661 373 346 72 43 chr9 10088764 10089111 -113987061 - L2a LINE L2 -19 3407 3051 9 661 367 317 114 12 chr9 10089261 10089427 -113986745 + MLT1A LTR MaLR 192 374 0 9 661 214 349 45 0 chr9 10089431 10089497 -113986675 + L2 LINE L2 2864 2932 -487 9 661 260 27 0 26 chr9 10091204 10091242 -113984930 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 9 661 256 261 86 134 chr9 10091457 10091485 -113984687 - B4A SINE B4 -43 249 154 9 661 343 290 29 44 chr9 10091485 10091622 -113984550 - B1F SINE Alu -8 141 7 9 661 256 261 86 134 chr9 10091622 10091643 -113984529 - B4A SINE B4 -43 153 73 9 661 22 0 0 0 chr9 10092396 10092418 -113983754 + AT_rich Low_complexity Low_complexity 1 22 0 1 662 6969 111 22 1 chr9 10092765 10093822 -113982350 + Lx3_Mus LINE L1 5923 7001 -8 1 662 387 298 0 17 chr9 10094428 10094544 -113981628 + PB1D10 SINE Alu 1 114 -3 1 662 195 42 0 0 chr9 10094577 10094601 -113981571 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 662 255 234 16 0 chr9 10094605 10094669 -113981503 + GA-rich Low_complexity Low_complexity 2 66 0 1 662 698 314 112 0 chr9 10096898 10097140 -113979032 + B4 SINE B4 20 288 -4 1 662 491 0 0 17 chr9 10097423 10097483 -113978689 + (TCC)n Simple_repeat Simple_repeat 3 61 0 1 662 523 275 21 14 chr9 10097552 10097696 -113978476 - B1F SINE Alu -1 148 4 1 662 362 270 45 74 chr9 10097696 10097728 -113978444 - ID_B1 SINE B4 0 224 54 1 662 7397 117 3 3 chr9 10098949 10100050 -113976122 - L1_Mus4 LINE L1 -7 6629 5553 1 662 643 127 30 45 chr9 10101317 10101449 -113974723 - Lx LINE L1 0 6654 6525 1 662 201 288 192 0 chr9 10101651 10101724 -113974448 - MIRb SINE MIR -144 124 38 1 662 316 325 28 54 chr9 10102252 10102444 -113973728 - MIR SINE MIR -61 207 3 1 662 23 0 0 0 chr9 10103136 10103159 -113973013 + AT_rich Low_complexity Low_complexity 1 23 0 1 662 21 95 0 0 chr9 10103664 10103727 -113972445 + AT_rich Low_complexity Low_complexity 1 63 0 1 662 309 213 61 50 chr9 10104199 10104298 -113971874 - HAL1-3A_ME LINE L1 -783 2075 1976 1 662 201 178 0 0 chr9 10104317 10104362 -113971810 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 662 460 325 17 73 chr9 10104364 10104543 -113971629 - B4A SINE B4 -122 170 2 1 662 33 0 0 0 chr9 10104969 10105002 -113971170 + AT_rich Low_complexity Low_complexity 1 33 0 1 662 23 0 0 0 chr9 10105535 10105558 -113970614 + AT_rich Low_complexity Low_complexity 1 23 0 1 662 463 304 83 10 chr9 10105785 10105973 -113970199 - B3A SINE B2 -1 215 14 1 662 686 53 11 0 chr9 10105973 10106068 -113970104 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1 662 333 0 0 0 chr9 10107336 10107373 -113968799 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 662 383 284 59 15 chr9 10108856 10108992 -113967180 + B1F SINE Alu 7 148 -1 1 662 270 312 12 72 chr9 10109020 10109103 -113967069 + ID4_ SINE ID 6 83 0 1 662 1622 31 0 20 chr9 10109473 10109670 -113966502 - B2_Mm1t SINE B2 0 193 1 1 662 4929 92 27 6 chr9 10109801 10110498 -113965674 - L1Md_F2 LINE L1 -15 6567 5856 1 662 484 275 32 24 chr9 10110929 10111052 -113965120 - B1F SINE Alu -8 141 18 1 662 185 284 134 25 chr9 10112899 10113018 -113963154 + MIRb SINE MIR 89 220 -48 1 662 358 264 0 84 chr9 10115943 10116038 -113960134 + RSINE1 SINE B4 79 165 0 1 662 420 20 0 0 chr9 10116353 10116402 -113959770 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 662 379 362 32 26 chr9 10116486 10116642 -113959530 - B4A SINE B4 -110 182 26 1 662 615 130 0 0 chr9 10117537 10117637 -113958535 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 662 300 119 0 0 chr9 10118144 10118203 -113957969 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 1 662 302 120 40 0 chr9 10118203 10118253 -113957919 - HAL1-3A_ME LINE L1 -830 2028 1977 1 662 249 146 0 0 chr9 10118269 10118317 -113957855 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 662 1576 224 71 11 chr9 10118339 10118718 -113957454 + MTC LTR MaLR 19 420 -1 1 662 1173 218 56 26 chr9 10118844 10119146 -113957026 - Lx4B LINE L1 -5 7053 6743 1 662 711 253 43 32 chr9 10119915 10120103 -113956069 + B3 SINE B2 5 194 -22 1 662 369 0 0 0 chr9 10120105 10120146 -113956026 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 662 1716 155 26 70 chr9 10120340 10120681 -113955491 - ORR1A3 LTR MaLR 0 326 1 1 662 246 229 0 0 chr9 10121677 10121747 -113954425 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 662 571 214 85 35 chr9 10123245 10123444 -113952728 - B3 SINE B2 -7 209 1 1 662 23 33 0 0 chr9 10123569 10123599 -113952573 + AT_rich Low_complexity Low_complexity 1 30 0 1 662 729 99 0 0 chr9 10123730 10123851 -113952321 + (TC)n Simple_repeat Simple_repeat 1 121 0 1 662 492 18 0 0 chr9 10123851 10123907 -113952265 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 662 257 218 18 0 chr9 10124119 10124174 -113951998 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 662 204 200 0 0 chr9 10124202 10124247 -113951925 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 1 662 189 0 0 0 chr9 10125027 10125048 -113951124 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 662 238 322 44 11 chr9 10126211 10126302 -113949870 - ORR1E LTR MaLR -233 126 33 1 662 27684 108 13 23 chr9 10126407 10127700 -113948472 - L1_Mus2 LINE L1 -2 6564 5254 1 662 189 0 0 0 chr9 10127700 10127721 -113948451 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 662 27684 130 21 10 chr9 10127721 10128280 -113947892 - L1_Mus2 LINE L1 -630 5253 4680 1 662 438 36 0 0 chr9 10128280 10128336 -113947836 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 1 662 27684 136 18 10 chr9 10128336 10132343 -113943829 - L1_Mus2 LINE L1 -1204 4679 670 1 662 2495 318 129 28 chr9 10132360 10133522 -113942650 - MTE-int LTR MaLR -130 1450 171 1 662 226 255 189 77 chr9 10133537 10133726 -113942446 - ORR1E LTR MaLR -164 210 4 1 662 3729 202 61 23 chr9 10134420 10135718 -113940454 + L1VL4 LINE L1 464 1815 -1744 1 662 7859 154 39 37 chr9 10135708 10137258 -113938914 + Lx4B LINE L1 3997 5548 -329 1 662 2605 180 30 10 chr9 10137263 10137758 -113938414 + RLTR16 LTR ERVK 1 505 0 1 662 4291 176 32 5 chr9 10137761 10138201 -113937971 + Lx4B LINE L1 5551 6003 -1055 1 662 1883 145 24 48 chr9 10138201 10138535 -113937637 + ORR1A3 LTR MaLR 1 326 0 1 662 4291 201 52 17 chr9 10138535 10139058 -113937114 + Lx4B LINE L1 6004 6552 -506 1 662 1472 286 51 13 chr9 10139058 10139511 -113936661 + RLTR16 LTR ERVK 15 484 -21 1 662 1166 241 42 7 chr9 10139595 10139966 -113936206 + Lx3C LINE L1 6595 6997 0 1 662 1085 115 0 0 chr9 10139975 10140123 -113936049 + B1_Mus1 SINE Alu 1 148 0 1 662 462 191 8 16 chr9 10140352 10140480 -113935692 + (TA)n Simple_repeat Simple_repeat 1 127 0 1 662 327 150 0 0 chr9 10140482 10140542 -113935630 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 662 26 30 0 0 chr9 10140651 10140684 -113935488 + AT_rich Low_complexity Low_complexity 1 33 0 1 662 567 0 0 0 chr9 10141906 10141969 -113934203 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 1 662 267 103 0 0 chr9 10142281 10142320 -113933852 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 1 662 414 0 0 0 chr9 10143623 10143669 -113932503 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 662 1294 297 76 30 chr9 10144369 10145255 -113930917 + Lx5 LINE L1 6220 7050 0 1 662 21 36 0 0 chr9 10145805 10145833 -113930339 + AT_rich Low_complexity Low_complexity 1 28 0 1 662 21081 116 15 2 chr9 10145924 10149953 -113926219 - L1_Mus1 LINE L1 0 6567 2482 1 662 3743 177 78 25 chr9 10149947 10151148 -113925024 - L1_Mus1 LINE L1 -4222 1661 387 1 662 244 224 143 13 chr9 10151163 10151240 -113924932 - Lx8 LINE L1 -143 7330 7244 1 662 288 370 25 0 chr9 10151249 10151330 -113924842 - PB1D10 SINE Alu -32 85 3 1 662 21 36 0 0 chr9 10151744 10151772 -113924400 + AT_rich Low_complexity Low_complexity 1 28 0 1 662 478 276 10 122 chr9 10152018 10152316 -113923856 + L1MA4A LINE L1 5604 5905 -398 1 662 318 215 0 33 chr9 10152346 10152529 -113923643 + CT-rich Low_complexity Low_complexity 2 178 0 1 662 258 183 0 0 chr9 10152572 10152643 -113923529 + CT-rich Low_complexity Low_complexity 2 72 0 1 662 957 121 0 0 chr9 10153917 10154057 -113922115 + B1_Mus1 SINE Alu 9 148 0 1 662 183 146 0 0 chr9 10154068 10154109 -113922063 + (A)n Simple_repeat Simple_repeat 1 41 0 1 662 22311 117 8 3 chr9 10154137 10158515 -113917657 + L1VL1 LINE L1 407 4806 -1077 1 662 21816 85 32 29 chr9 10158504 10162830 -113913342 + L1_Mus1 LINE L1 440 5586 -297 1 662 8489 32 0 0 chr9 10162830 10163825 -113912347 + L1Md_T LINE L1 5588 6582 0 1 662 10188 133 49 37 chr9 10163825 10165580 -113910592 + L1_Mus1 LINE L1 4774 6567 0 1 662 617 253 24 136 chr9 10166076 10166229 -113909943 + B3 SINE B2 37 200 -16 1 662 576 0 0 0 chr9 10166229 10166293 -113909879 + (TAAAA)n Simple_repeat Simple_repeat 5 68 0 1 662 402 253 24 136 chr9 10166293 10166308 -113909864 + B2_Mm2 SINE B2 173 186 -9 1 662 1204 201 206 4 chr9 10167084 10167573 -113908599 + RMER20B LTR ERVK 5 627 0 1 662 569 280 21 22 chr9 10168124 10168293 -113907879 - B3 SINE B2 -22 171 8 1 662 31 26 0 0 chr9 10168383 10168421 -113907751 + AT_rich Low_complexity Low_complexity 1 38 0 1 662 188 0 74 0 chr9 10168603 10168630 -113907542 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 662 991 242 26 4 chr9 10169309 10169541 -113906631 + MT2A LTR ERVL 1 237 -296 1 662 237 65 0 0 chr9 10171028 10171059 -113905113 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 662 453 263 35 112 chr9 10171059 10171256 -113904916 - B3A SINE B2 -16 182 1 1 662 2285 226 64 64 chr9 10172755 10173855 -113902317 + L1_Mus1 LINE L1 218 1183 -5433 1 662 5493 42 1 0 chr9 10173855 10174519 -113901653 + L1Md_T LINE L1 5916 6580 -2 1 662 28387 109 12 3 chr9 10174519 10179852 -113896320 + L1_Mus1 LINE L1 1181 6567 0 1 662 23 0 0 0 chr9 10181086 10181109 -113895063 + AT_rich Low_complexity Low_complexity 1 23 0 1 662 32 26 0 0 chr9 10181204 10181243 -113894929 + AT_rich Low_complexity Low_complexity 1 39 0 1 662 834 147 9 0 chr9 10184343 10184561 -113891611 + (CA)n Simple_repeat Simple_repeat 1 220 0 1 662 490 314 8 0 chr9 10184589 10184710 -113891462 - B1_Mur1 SINE Alu -20 129 8 1 662 23 54 0 0 chr9 10184715 10184752 -113891420 + AT_rich Low_complexity Low_complexity 1 37 0 1 662 649 251 30 12 chr9 10184903 10185068 -113891104 + B3 SINE B2 4 171 -45 1 662 32 43 0 0 chr9 10185108 10185154 -113891018 + AT_rich Low_complexity Low_complexity 1 46 0 1 662 404 297 0 41 chr9 10185418 10185541 -113890631 + RSINE1 SINE B4 48 165 0 1 662 519 45 0 0 chr9 10186460 10186526 -113889646 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 662 306 0 0 0 chr9 10186526 10186559 -113889613 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 662 480 139 0 0 chr9 10186606 10186692 -113889480 - Lx LINE L1 -12 6642 6557 2 662 500 101 0 0 chr9 10187139 10187218 -113888954 - MusHAL1 LINE L1 -632 2080 2002 2 662 1395 59 0 0 chr9 10187211 10187413 -113888759 + MusHAL1 LINE L1 1759 1960 -752 2 662 4544 100 7 14 chr9 10187419 10188111 -113888061 - L1_Mm LINE L1 -30 5853 5167 2 662 2229 86 3 7 chr9 10188111 10188416 -113887756 + L1_Mus1 LINE L1 6264 6567 0 2 662 421 101 56 0 chr9 10188429 10188518 -113887654 + MusHAL1 LINE L1 1928 2021 -691 2 662 487 319 67 12 chr9 10188710 10188875 -113887297 + B3 SINE B2 6 179 -37 2 662 180 0 0 0 chr9 10188880 10188900 -113887272 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 662 22269 101 14 9 chr9 10189062 10193303 -113882869 + L1Md_F2 LINE L1 392 4655 -1228 2 662 2754 22 5 103 chr9 10193304 10193711 -113882461 - IAPLTR1_Mm LTR ERVK 0 367 1 2 662 27430 22 1 2 chr9 10193711 10196988 -113879184 - IAPEz-int LTR ERVK 0 6481 3210 2 662 7807 77 67 48 chr9 10196987 10198268 -113877904 - IAPEz-int LTR ERVK -5168 1313 8 2 662 2754 22 5 103 chr9 10198268 10198675 -113877497 - IAPLTR1_Mm LTR ERVK 0 367 1 2 662 6392 91 3 2 chr9 10198705 10199633 -113876539 + L1Md_F2 LINE L1 4657 5585 -298 2 662 7065 94 5 7 chr9 10199634 10200632 -113875540 + L1Md_F2 LINE L1 5587 6582 0 2 662 204 58 115 0 chr9 10200686 10200738 -113875434 + T-rich Low_complexity Low_complexity 2 59 0 2 662 198 216 0 0 chr9 10201958 10201982 -113874190 + T-rich Low_complexity Low_complexity 29 52 0 2 662 1069 117 0 22 chr9 10201982 10202166 -113874006 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2 662 198 216 0 0 chr9 10202166 10202192 -113873980 + T-rich Low_complexity Low_complexity 3 28 0 2 662 219 36 0 0 chr9 10202196 10202224 -113873948 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2 662 363 23 0 0 chr9 10202976 10203020 -113873152 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 662 12138 137 31 22 chr9 10203542 10205002 -113871170 + Lx3A LINE L1 36 1565 -4321 2 662 230 0 33 0 chr9 10205002 10205032 -113871140 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 662 12138 90 3 10 chr9 10205032 10206543 -113869629 + Lx3A LINE L1 1566 3071 -2815 2 662 8470 92 23 8 chr9 10206539 10206818 -113869354 + Lx3A LINE L1 4562 4839 -1047 2 662 248 0 31 0 chr9 10206818 10206850 -113869322 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 662 8470 92 23 8 chr9 10206850 10207840 -113868332 + Lx3A LINE L1 4840 5856 -30 2 662 3152 53 5 10 chr9 10207840 10208238 -113867934 + MTA_Mm LTR MaLR 1 396 0 2 662 8470 108 35 9 chr9 10208238 10208281 -113867891 + Lx3A LINE L1 5855 5903 -1078 2 662 405 0 0 0 chr9 10208281 10208326 -113867846 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 662 7421 129 50 11 chr9 10208326 10209345 -113866827 + Lx3A LINE L1 5904 6969 -12 2 662 25 0 0 0 chr9 10209345 10209370 -113866802 + AT_rich Low_complexity Low_complexity 1 25 0 2 662 2101 95 42 21 chr9 10209659 10209992 -113866180 - L1_Mus4 LINE L1 0 6636 6297 2 662 623 267 40 6 chr9 10210095 10210272 -113865900 - B3A SINE B2 -13 185 3 2 662 441 36 0 0 chr9 10211102 10211157 -113865015 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 662 231 323 43 78 chr9 10211455 10211596 -113864576 + MIR SINE MIR 113 248 -14 2 662 526 338 49 20 chr9 10212747 10212992 -113863180 + B4A SINE B4 5 256 -36 2 662 243 0 0 0 chr9 10213020 10213047 -113863125 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 662 1813 192 148 13 chr9 10213332 10213785 -113862387 - RMER20B LTR ERVK -5 622 109 2 662 5579 132 39 13 chr9 10213785 10214734 -113861438 + Lx3C LINE L1 5999 6972 -4 2 662 249 154 58 0 chr9 10214735 10214787 -113861385 + L1_Mur2 LINE L1 4424 4478 -1399 2 662 284 183 61 0 chr9 10214812 10214894 -113861278 + L1_Mur2 LINE L1 4582 4668 -1209 2 662 333 0 0 0 chr9 10215584 10215621 -113860551 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 662 236 184 0 0 chr9 10216709 10216758 -113859414 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 2 662 306 0 0 0 chr9 10217636 10217670 -113858502 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 662 405 0 0 0 chr9 10217670 10217714 -113858458 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 662 383 356 35 47 chr9 10217725 10217981 -113858191 - B4A SINE B4 -35 257 5 2 662 268 231 40 40 chr9 10218313 10218439 -113857733 + L1MEf LINE L1 662 787 -5413 2 662 822 126 0 8 chr9 10218472 10218600 -113857572 + B2_Mm2 SINE B2 17 143 -52 2 662 209 57 29 0 chr9 10218600 10218635 -113857537 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 662 191 88 29 0 chr9 10218657 10218691 -113857481 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 662 378 0 0 0 chr9 10218712 10218754 -113857418 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 662 4256 105 60 44 chr9 10218780 10219102 -113857070 + RMER17D2 LTR ERVK 1 317 -492 2 662 1019 107 11 17 chr9 10219102 10219282 -113856890 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 2 662 4256 105 60 44 chr9 10219282 10219749 -113856423 + RMER17D2 LTR ERVK 318 802 -7 2 662 8331 103 27 57 chr9 10219874 10221966 -113854206 + L1VL2 LINE L1 286 2299 -1316 2 82 9443 19 3 19 chr9 10221964 10223964 -113852208 - L1Md_A LINE L1 -3565 2318 354 2 663 5212 98 29 2 chr9 10223962 10224781 -113851391 + L1VL2 LINE L1 2293 3133 -482 2 663 425 231 164 8 chr9 10224891 10225013 -113851159 + ORR1D1 LTR MaLR 1 141 -233 2 663 198 0 0 0 chr9 10225091 10225113 -113851059 + (T)n Simple_repeat Simple_repeat 1 22 0 2 663 594 302 39 11 chr9 10226234 10226415 -113849757 - MER58A DNA MER1_type 0 224 39 2 663 204 130 65 0 chr9 10227059 10227105 -113849067 + CT-rich Low_complexity Low_complexity 2 50 0 2 663 422 238 20 0 chr9 10227177 10227278 -113848894 - B1_Mus1 SINE Alu 0 148 46 2 663 323 268 46 11 chr9 10229068 10229155 -113847017 + PB1D9 SINE Alu 20 109 -11 2 663 237 380 8 34 chr9 10230482 10230599 -113845573 + RSINE1 SINE B4 2 115 -50 2 663 270 116 0 0 chr9 10230724 10230767 -113845405 + (TTAG)n Simple_repeat Simple_repeat 3 45 0 2 663 2529 137 16 113 chr9 10230814 10231308 -113844864 - RLTR41 LTR ERV1 0 446 1 2 663 528 201 299 6 chr9 10231765 10231928 -113844244 - B3 SINE B2 0 216 6 2 663 23 0 0 0 chr9 10232620 10232643 -113843529 + AT_rich Low_complexity Low_complexity 1 23 0 2 663 412 264 104 37 chr9 10232917 10233349 -113842823 + L1MC LINE L1 5189 5652 -681 2 663 185 0 0 39 chr9 10233406 10233432 -113842740 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2 663 606 60 0 0 chr9 10234779 10234862 -113841310 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 663 22 99 0 0 chr9 10235201 10235272 -113840900 + AT_rich Low_complexity Low_complexity 1 71 0 2 663 375 355 50 32 chr9 10235664 10235885 -113840287 - MLT1A1 LTR MaLR -5 403 179 2 663 23 0 0 0 chr9 10235926 10235949 -113840223 + AT_rich Low_complexity Low_complexity 1 23 0 2 663 707 305 29 19 chr9 10235958 10236165 -113840007 - B3 SINE B2 -6 210 2 2 663 570 93 0 0 chr9 10236249 10236335 -113839837 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 663 608 322 82 46 chr9 10236341 10236626 -113839546 - Lx8 LINE L1 -40 7433 7143 2 663 741 40 0 0 chr9 10236626 10236725 -113839447 - L1_Mus2 LINE L1 0 6566 6468 2 663 608 322 82 46 chr9 10236725 10236855 -113839317 - Lx8 LINE L1 -331 7142 7003 2 663 293 310 0 12 chr9 10236863 10236948 -113839224 + Lx7 LINE L1 5616 5699 -1997 2 663 793 216 29 29 chr9 10237063 10237273 -113838899 + Lx7 LINE L1 5690 5899 -1797 2 663 1904 215 21 179 chr9 10237474 10238200 -113837972 - RMER19C LTR ERVK 0 611 1 2 663 1139 89 0 0 chr9 10239744 10239890 -113836282 + B1_Mus2 SINE Alu 2 147 0 2 663 591 15 0 0 chr9 10240500 10240568 -113835604 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 663 504 0 0 0 chr9 10240608 10240664 -113835508 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 663 517 357 50 11 chr9 10240680 10240941 -113835231 - B4A SINE B4 -6 286 16 2 663 3329 40 2 0 chr9 10241031 10241426 -113834746 - MTA_Mm LTR MaLR 0 396 1 2 663 239 239 43 43 chr9 10241654 10241724 -113834448 + L1M3 LINE L1 4049 4118 -2022 2 663 213 94 0 0 chr9 10241787 10241819 -113834353 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 2 663 631 294 34 63 chr9 10241826 10242236 -113833936 + L1M3 LINE L1 4354 4751 -1389 2 663 1050 214 188 137 chr9 10243601 10244017 -113832155 + MT2A LTR ERVL 6 442 -91 2 663 536 84 12 0 chr9 10244025 10244108 -113832064 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 663 7112 170 88 8 chr9 10244153 10245683 -113830489 + MERVL_2A-int LTR ERVL 1 1653 -4108 2 663 6784 178 39 5 chr9 10245689 10246881 -113829291 + MERVL_2A-int LTR ERVL 1840 3072 -2689 2 663 4591 165 57 31 chr9 10246903 10247777 -113828395 + MERVL_2A-int LTR ERVL 4712 5608 -153 2 663 238 171 0 176 chr9 10247777 10247862 -113828310 + ORR1A3-int LTR MaLR 548 617 -1346 2 663 602 172 36 29 chr9 10247874 10248012 -113828160 + MERVL_2A-int LTR ERVL 5623 5761 0 2 663 805 289 78 78 chr9 10248012 10248436 -113827736 + MT2B LTR ERVL 1 520 -81 2 663 618 14 0 0 chr9 10248436 10248507 -113827665 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 663 805 274 63 84 chr9 10248507 10248575 -113827597 + MT2B LTR ERVL 521 579 -22 2 663 357 24 0 0 chr9 10248860 10248902 -113827270 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 663 1931 206 89 16 chr9 10251308 10251733 -113824439 + RMER4B LTR ERVK 21 476 -109 2 663 1857 120 12 68 chr9 10251775 10252115 -113824057 - ORR1A4 LTR MaLR -8 321 1 2 663 276 30 0 0 chr9 10252125 10252158 -113824014 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 663 1318 39 0 67 chr9 10252749 10252944 -113823228 - L1Md_F3 LINE L1 -3 6581 6400 2 663 366 340 0 0 chr9 10253642 10253742 -113822430 + PB1D10 SINE Alu 3 102 -15 2 663 4554 43 2 0 chr9 10254673 10255304 -113820868 - L1Md_F2 LINE L1 -637 5945 5314 2 663 4298 82 19 3 chr9 10255304 10255888 -113820284 + L1Md_F2 LINE L1 5977 6569 -13 2 663 318 209 47 19 chr9 10256281 10256388 -113819784 + (TATATG)n Simple_repeat Simple_repeat 5 114 0 2 663 418 333 78 26 chr9 10257246 10257477 -113818695 + MER74C LTR ERVL 178 420 -40 2 663 332 253 119 79 chr9 10257640 10257850 -113818322 + L1MA9 LINE L1 6026 6252 -60 2 663 1109 82 0 7 chr9 10257850 10257998 -113818174 - B1_Mus1 SINE Alu 0 148 2 2 663 332 253 119 79 chr9 10257998 10258040 -113818132 + L1MA9 LINE L1 6253 6288 -24 2 663 606 79 0 0 chr9 10258209 10258298 -113817874 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 663 462 279 16 0 chr9 10258357 10258479 -113817693 - B3A SINE B2 -73 125 2 2 663 331 331 87 82 chr9 10258490 10258674 -113817498 - ID_B1 SINE B4 -7 217 33 2 663 483 33 0 0 chr9 10260351 10260412 -113815760 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 663 638 307 37 42 chr9 10260472 10260686 -113815486 - B4 SINE B4 -75 217 5 2 663 367 299 52 52 chr9 10261391 10261525 -113814647 + RSINE1 SINE B4 3 136 -29 2 663 801 49 0 0 chr9 10261536 10261638 -113814534 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 663 1316 124 242 3 chr9 10261782 10262079 -113814093 - RLTR17 LTR ERVK -324 368 1 2 663 7614 204 65 64 chr9 10262079 10264502 -113811670 - RMER3D-int LTR ERVK 0 2842 72 2 663 438 102 0 0 chr9 10264502 10264561 -113811611 - L1Md_F2 LINE L1 -901 5683 5625 3 663 6373 88 1 29 chr9 10264561 10265479 -113810693 + L1Md_F2 LINE L1 5691 6582 0 3 663 333 206 0 52 chr9 10265528 10265605 -113810567 - RMER3D-int LTR ERVK -2769 73 1 2 663 2172 164 41 15 chr9 10265605 10266044 -113810128 - RLTR17 LTR ERVK 0 692 203 2 663 422 143 0 13 chr9 10266219 10266297 -113809875 + (CTA)n Simple_repeat Simple_repeat 1 77 0 3 663 252 86 0 0 chr9 10266298 10266333 -113809839 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 3 663 248 333 15 0 chr9 10266344 10266410 -113809762 - B1_Mur2 SINE Alu -12 137 71 3 663 206 73 0 89 chr9 10266873 10266918 -113809254 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 3 663 545 262 133 5 chr9 10267366 10267554 -113808618 + B3 SINE B2 1 212 -4 3 663 24 0 0 0 chr9 10267813 10267837 -113808335 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 344 244 23 0 chr9 10268284 10268370 -113807802 + ID_B1 SINE B4 130 217 -7 3 663 21 0 0 0 chr9 10268406 10268427 -113807745 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 496 284 102 5 chr9 10269303 10269508 -113806664 + MIR SINE MIR 34 258 -4 3 663 226 197 0 0 chr9 10270256 10270317 -113805855 - L2a LINE L2 -147 3279 3219 3 663 180 369 59 26 chr9 10270311 10270464 -113805708 - L2 LINE L2 -1829 1590 1433 3 663 925 316 79 51 chr9 10270824 10271751 -113804421 + L1MA4 LINE L1 5328 6280 -20 3 663 659 209 54 48 chr9 10272007 10272193 -113803979 + ORR1D2 LTR MaLR 7 193 -177 3 663 1049 241 95 97 chr9 10272199 10272685 -113803487 - MT2A LTR ERVL -56 545 1 3 663 403 236 67 11 chr9 10272694 10272802 -113803370 + ORR1D2 LTR MaLR 205 327 -43 3 663 242 183 21 137 chr9 10272857 10272952 -113803220 - Lx8 LINE L1 -191 7282 7199 3 663 1638 208 9 18 chr9 10272873 10273210 -113802962 - RMER1C Other Other -187 1155 822 3 663 229 323 0 0 chr9 10273283 10273345 -113802827 - ID4_ SINE ID -4 79 18 3 663 2183 124 16 0 chr9 10273649 10273971 -113802201 - ORR1A2 LTR MaLR 0 327 1 3 663 301 196 20 0 chr9 10274125 10274176 -113801996 - HAL1-3A_ME LINE L1 -821 2037 1986 3 663 558 41 0 0 chr9 10275482 10275555 -113800617 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 663 384 77 0 0 chr9 10276372 10276424 -113799748 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 663 550 196 18 0 chr9 10276552 10276664 -113799508 + B1_Mus2 SINE Alu 32 145 -2 3 663 963 198 42 17 chr9 10276754 10276990 -113799182 - Lx7 LINE L1 -8 7688 7447 3 663 210 375 68 0 chr9 10277315 10277507 -113798665 + MIR SINE MIR 37 241 -21 3 663 189 322 123 49 chr9 10277705 10277868 -113798304 - MIRb SINE MIR -75 193 19 3 663 293 371 17 64 chr9 10278378 10278583 -113797589 + MLT1A LTR MaLR 143 333 -32 3 663 317 281 62 99 chr9 10278800 10278962 -113797210 + RMER20B LTR ERVK 350 505 -122 3 663 204 67 0 0 chr9 10280090 10280120 -113796052 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 663 229 196 22 0 chr9 10280220 10280266 -113795906 + GA-rich Low_complexity Low_complexity 2 48 0 3 663 443 63 16 0 chr9 10280272 10280335 -113795837 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 3 663 1015 0 14 22 chr9 10280335 10280472 -113795700 + (GAGAA)n Simple_repeat Simple_repeat 5 141 0 3 663 279 0 0 0 chr9 10281496 10281527 -113794645 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 663 201 94 0 0 chr9 10281569 10281601 -113794571 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 663 233 272 166 24 chr9 10282949 10283160 -113793012 - L1_Rod LINE L1 -329 5518 5278 3 663 300 261 207 0 chr9 10283226 10283337 -113792835 - L1M2 LINE L1 -869 5274 5141 3 663 376 326 105 14 chr9 10283608 10283751 -113792421 - B3 SINE B2 -45 171 16 3 663 309 214 114 0 chr9 10283791 10283861 -113792311 - B1_Mur4 SINE Alu -59 91 14 3 663 389 333 139 0 chr9 10283887 10284145 -113792027 - Lx8 LINE L1 0 7473 7180 3 663 340 256 45 8 chr9 10284508 10284642 -113791530 + Lx9 LINE L1 7506 7644 0 3 663 323 370 73 27 chr9 10285841 10285991 -113790181 + RSINE1 SINE B4 7 163 -2 3 663 216 342 135 64 chr9 10286040 10286196 -113789976 + MIRb SINE MIR 25 191 -77 3 663 5343 31 6 0 chr9 10286644 10287282 -113788890 - L1Md_F3 LINE L1 -3 6581 5940 3 663 1451 55 0 0 chr9 10287282 10287492 -113788680 + L1Md_F LINE L1 952 1161 -5399 3 663 1180 87 35 0 chr9 10288187 10288360 -113787812 + L1Md_F2 LINE L1 6385 6563 -19 3 663 419 113 0 14 chr9 10288649 10288721 -113787451 + (GGA)n Simple_repeat Simple_repeat 2 72 0 3 663 1135 82 0 0 chr9 10289274 10289420 -113786752 - B1_Mus2 SINE Alu 0 147 2 3 663 470 270 30 0 chr9 10289952 10290052 -113786120 + Lx8 LINE L1 7179 7281 -192 3 663 526 260 48 24 chr9 10290281 10290407 -113785765 + RNERVK23-int LTR ERVK 7074 7202 -204 3 663 346 264 24 47 chr9 10290974 10291101 -113785071 + RLTR45-int LTR ERVK 181 304 -6940 3 663 1399 234 90 44 chr9 10291328 10291823 -113784349 + RLTR45-int LTR ERVK 241 668 -5469 3 663 440 186 93 0 chr9 10291823 10291941 -113784231 + RLTR45-int LTR ERVK 1721 1849 -5557 3 663 261 279 0 85 chr9 10291952 10292046 -113784126 + RLTR45-int LTR ERVK 2454 2539 -4867 3 663 5113 192 60 90 chr9 10292074 10293905 -113782267 + RLTR45-int LTR ERVK 3583 5907 -1337 3 663 890 325 15 9 chr9 10293928 10294263 -113781909 + RNERVK23-int LTR ERVK 7506 7842 -375 3 663 3946 194 24 9 chr9 10294279 10294976 -113781196 + ETnERV2-int LTR ERVK 6495 7202 -204 3 663 23 33 0 0 chr9 10297049 10297079 -113779093 + AT_rich Low_complexity Low_complexity 1 30 0 3 663 297 109 0 0 chr9 10297194 10297249 -113778923 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 3 663 1134 48 7 27 chr9 10297249 10297398 -113778774 - B1_Mus2 SINE Alu 0 147 2 3 663 3381 244 45 71 chr9 10297415 10298443 -113777729 + Lx6 LINE L1 5735 6735 -725 3 663 280 43 43 0 chr9 10298446 10298492 -113777680 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 663 915 194 22 13 chr9 10298493 10298723 -113777449 + Lx7 LINE L1 7391 7622 -74 3 663 6094 114 5 22 chr9 10298723 10300412 -113775760 + L1VL1 LINE L1 194 1845 -1853 3 663 7227 99 17 0 chr9 10300429 10301583 -113774589 + L1_Mus3 LINE L1 5460 6632 -6 3 663 365 220 0 10 chr9 10301727 10301828 -113774344 + Lx6 LINE L1 7351 7450 -10 3 663 32 57 0 0 chr9 10301828 10301881 -113774291 + AT_rich Low_complexity Low_complexity 1 53 0 3 663 217 240 20 0 chr9 10302625 10302675 -113773497 + GA-rich Low_complexity Low_complexity 2 52 0 3 663 231 61 0 0 chr9 10303093 10303126 -113773046 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 663 225 0 0 0 chr9 10303126 10303151 -113773021 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 663 481 302 79 38 chr9 10303437 10303709 -113772463 - L1MC3 LINE L1 -9 7776 7498 3 663 1144 186 13 13 chr9 10303709 10303933 -113772239 - URR1B DNA MER1_type 0 225 2 3 663 481 302 79 38 chr9 10303933 10304104 -113772068 - L1MC3 LINE L1 -288 7497 7315 3 663 29 28 0 0 chr9 10306394 10306430 -113769742 + AT_rich Low_complexity Low_complexity 1 36 0 3 663 216 67 0 0 chr9 10307275 10307305 -113768867 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 663 363 44 0 0 chr9 10309604 10309649 -113766523 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 663 21 0 0 0 chr9 10310238 10310259 -113765913 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 469 326 53 0 chr9 10310425 10310557 -113765615 + RSINE1 SINE B4 27 165 0 3 663 432 401 28 0 chr9 10311058 10311235 -113764937 - ID_B1 SINE B4 -11 213 32 3 663 606 242 50 70 chr9 10312869 10313069 -113763103 - B3A SINE B2 0 198 3 3 663 284 266 220 0 chr9 10313828 10313937 -113762235 - L2 LINE L2 -657 2762 2630 3 663 327 49 0 0 chr9 10314556 10314597 -113761575 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 663 471 321 82 52 chr9 10314597 10314791 -113761381 - ID_B1 SINE B4 -23 201 2 3 663 249 323 72 52 chr9 10314800 10315146 -113761026 - L1ME1 LINE L1 -66 6113 5761 3 663 671 248 122 15 chr9 10315355 10315552 -113760620 + MTD LTR MaLR 200 417 -2 3 663 1292 241 126 46 chr9 10315639 10316187 -113759985 - RMER17A2 LTR ERVK -330 576 1 3 663 489 325 55 17 chr9 10316317 10316552 -113759620 + Lx8 LINE L1 7227 7470 -3 3 663 1976 180 52 3 chr9 10316570 10316938 -113759234 - ORR1B1 LTR MaLR -8 386 1 3 663 1075 180 16 5 chr9 10317735 10317925 -113758247 + URR1A DNA MER1_type 35 226 0 3 663 276 155 0 0 chr9 10317925 10317996 -113758176 + (TTTA)n Simple_repeat Simple_repeat 3 73 0 3 663 2173 178 36 46 chr9 10318164 10318647 -113757525 - RLTR11A LTR ERVK -12 516 1 3 663 359 243 51 86 chr9 10318669 10318786 -113757386 + Lx8 LINE L1 6823 6935 -538 3 663 1040 78 21 0 chr9 10319005 10319146 -113757026 + B1_Mus1 SINE Alu 2 145 -3 3 663 243 0 0 0 chr9 10319146 10319173 -113756999 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 663 212 86 0 28 chr9 10319868 10319904 -113756268 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 3 663 3051 20 0 0 chr9 10320193 10320539 -113755633 - ORR1A0 LTR MaLR 0 346 1 3 663 13955 50 10 1 chr9 10320539 10322315 -113753857 - ORR1A0-int LTR MaLR 0 1792 1 3 663 3089 17 0 0 chr9 10322315 10322661 -113753511 - ORR1A0 LTR MaLR 0 346 1 3 663 232 191 0 0 chr9 10323164 10323206 -113752966 + T-rich Low_complexity Low_complexity 1 42 0 3 663 259 333 40 40 chr9 10323655 10323805 -113752367 - MLT1E LTR MaLR -28 625 476 3 663 307 290 237 6 chr9 10323937 10324093 -113752079 + MLT1E1A LTR MaLR 271 462 -218 3 663 381 117 0 0 chr9 10324093 10324153 -113752019 + (TATG)n Simple_repeat Simple_repeat 2 61 0 3 663 898 101 8 0 chr9 10324719 10324848 -113751324 + B1_Mus2 SINE Alu 18 147 0 3 663 183 80 0 0 chr9 10324848 10324873 -113751299 + (A)n Simple_repeat Simple_repeat 1 25 0 3 663 530 194 152 8 chr9 10325177 10325302 -113750870 + B1_Mus1 SINE Alu 6 148 0 3 663 353 202 11 0 chr9 10326260 10326281 -113749891 + polypyrimidine Low_complexity Low_complexity 73 93 0 3 663 1068 96 0 33 chr9 10326281 10326465 -113749707 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 663 353 202 11 0 chr9 10326465 10326532 -113749640 + CT-rich Low_complexity Low_complexity 5 72 0 3 663 4133 243 41 22 chr9 10326543 10327575 -113748597 - Lx5 LINE L1 -2 7048 5998 3 663 354 283 39 8 chr9 10327711 10327839 -113748333 + Lx8 LINE L1 7107 7238 -235 3 663 342 0 0 0 chr9 10328071 10328109 -113748063 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 663 37 0 0 0 chr9 10328338 10328375 -113747797 + AT_rich Low_complexity Low_complexity 1 37 0 4 663 4931 71 11 9 chr9 10329596 10330251 -113745921 + L1Md_F2 LINE L1 5915 6570 -12 4 663 378 0 0 0 chr9 10330301 10330343 -113745829 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 663 210 71 0 0 chr9 10330502 10330530 -113745642 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 663 233 167 0 23 chr9 10330531 10330574 -113745598 - ORR1E LTR MaLR -51 308 267 4 663 233 246 0 0 chr9 10331740 10331797 -113744375 - B4 SINE B4 -78 214 158 4 663 1452 244 47 22 chr9 10331877 10332284 -113743888 + MTD LTR MaLR 3 419 0 4 663 2188 133 22 16 chr9 10332461 10332827 -113743345 + RLTR9A LTR ERVK 1 368 0 4 663 195 100 0 0 chr9 10333137 10333167 -113743005 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 4 663 189 0 0 0 chr9 10333174 10333195 -113742977 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4 663 519 17 0 0 chr9 10333221 10333281 -113742891 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 663 10890 208 89 65 chr9 10333286 10333708 -113742464 + RMER16-int LTR ERVK 340 868 -4538 4 663 2849 112 9 7 chr9 10333708 10334140 -113742032 - L1_Mus3 LINE L1 -1 6637 6205 4 663 10890 208 89 65 chr9 10334140 10335664 -113740508 + RMER16-int LTR ERVK 869 2402 -3004 4 663 1007 98 27 40 chr9 10335664 10335813 -113740359 - B1_Mus2 SINE Alu 0 147 1 4 663 10890 208 89 65 chr9 10335813 10336706 -113739466 + RMER16-int LTR ERVK 2403 3278 -2128 4 663 2888 77 13 18 chr9 10336706 10337104 -113739068 + MTA_Mm LTR MaLR 1 396 0 4 663 10890 208 89 65 chr9 10337104 10337487 -113738685 + RMER16-int LTR ERVK 3279 3678 -1728 4 663 1064 69 0 76 chr9 10337487 10337644 -113738528 + B1_Mm SINE Alu 1 145 -2 4 663 245 29 29 0 chr9 10337644 10337678 -113738494 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 663 10890 208 89 65 chr9 10337678 10338199 -113737973 + RMER16-int LTR ERVK 3679 4175 -1231 4 663 355 250 174 18 chr9 10338396 10338563 -113737609 + ETnERV2-int LTR ERVK 6233 6425 -981 4 663 309 167 27 27 chr9 10338773 10338847 -113737325 + ETnERV2-int LTR ERVK 7331 7404 -2 4 663 2165 126 28 6 chr9 10338848 10339208 -113736964 + RLTR9A LTR ERVK 1 368 0 4 663 225 0 0 0 chr9 10340293 10340318 -113735854 + (A)n Simple_repeat Simple_repeat 1 25 0 4 663 218 56 28 0 chr9 10340544 10340580 -113735592 + (TTG)n Simple_repeat Simple_repeat 3 39 0 4 663 668 100 190 8 chr9 10340580 10340701 -113735471 - B1_Mus2 SINE Alu 0 147 5 4 663 23 33 0 0 chr9 10341483 10341513 -113734659 + AT_rich Low_complexity Low_complexity 1 30 0 4 663 30111 81 8 19 chr9 10341524 10345098 -113731074 + L1Md_F2 LINE L1 452 3985 -1898 4 663 3568 73 19 2 chr9 10345098 10345565 -113730607 + MT2C_Mm LTR ERVL 1 475 0 4 663 30111 76 8 5 chr9 10345565 10347163 -113729009 + L1Md_F2 LINE L1 3986 5585 -298 4 663 6988 102 7 8 chr9 10347164 10348160 -113728012 + L1Md_F2 LINE L1 5587 6581 -1 4 663 225 314 107 10 chr9 10348558 10348661 -113727511 - Charlie8 DNA MER1_type -2076 352 240 4 663 323 226 94 31 chr9 10348755 10348851 -113727321 + B1F SINE Alu 45 146 -3 4 663 1531 32 0 0 chr9 10349045 10349233 -113726939 + L1Md_T LINE L1 6395 6582 0 4 663 252 0 0 0 chr9 10349242 10349270 -113726902 + (A)n Simple_repeat Simple_repeat 1 28 0 4 663 4641 169 96 43 chr9 10350188 10351229 -113724943 + RLTR25A LTR ERVK 8 1103 0 4 663 1093 23 0 0 chr9 10351850 10351982 -113724190 - L1_Mm LINE L1 -389 5494 5363 4 663 7612 50 1 3 chr9 10351982 10352924 -113723248 + L1Md_F2 LINE L1 5631 6570 -12 4 663 601 307 81 59 chr9 10353443 10353814 -113722358 + MTEa LTR MaLR 1 379 0 4 663 360 245 9 84 chr9 10354506 10354613 -113721559 + PB1D7 SINE Alu 21 119 -1 4 82 254 338 0 15 chr9 10354643 10354709 -113721463 + ID4 SINE ID 18 82 -1 4 664 243 386 86 8 chr9 10354709 10354771 -113721401 + ID_B1 SINE B4 18 155 -69 4 664 382 323 56 15 chr9 10358244 10358511 -113717661 + L1MA6 LINE L1 5991 6268 -32 4 664 1474 169 133 17 chr9 10359790 10360091 -113716081 - ORR1B2 LTR MaLR -29 338 3 4 664 279 0 0 0 chr9 10360191 10360222 -113715950 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4 664 8725 116 6 4 chr9 10360313 10362531 -113713641 + L1_Mus3 LINE L1 4404 6624 -14 4 664 1140 0 21 0 chr9 10362531 10362671 -113713501 + (GAA)n Simple_repeat Simple_repeat 2 144 0 4 664 635 285 103 7 chr9 10364327 10364666 -113711506 - L1MA6 LINE L1 -285 6015 5654 4 664 669 158 0 0 chr9 10364770 10364890 -113711282 + (TA)n Simple_repeat Simple_repeat 1 120 0 4 664 648 130 31 6 chr9 10364893 10365055 -113711117 + (TG)n Simple_repeat Simple_repeat 1 166 0 4 664 3297 233 130 16 chr9 10365638 10365733 -113710439 - RMER1A Other Other -18 1012 882 4 664 432 0 0 0 chr9 10365733 10365781 -113710391 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 664 3297 238 126 17 chr9 10365781 10366648 -113709524 - RMER1A Other Other -149 881 2 4 664 1617 251 37 65 chr9 10366628 10367136 -113709036 - RMER1B Other Other -572 494 1 4 664 37 81 0 0 chr9 10369597 10369683 -113706489 + AT_rich Low_complexity Low_complexity 1 86 0 4 664 25 75 0 0 chr9 10369779 10369832 -113706340 + AT_rich Low_complexity Low_complexity 1 53 0 4 664 356 331 7 57 chr9 10369864 10370005 -113706167 - B3A SINE B2 0 216 83 4 664 19530 123 153 2 chr9 10370351 10373889 -113702283 - L1_Mus3 LINE L1 -3 6635 2348 4 664 206 32 32 0 chr9 10373889 10373920 -113702252 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 664 19530 125 105 5 chr9 10373920 10375988 -113700184 - L1_Mus3 LINE L1 -3536 2347 229 4 664 381 377 59 31 chr9 10376333 10376555 -113699617 - ORR1D2 LTR MaLR -142 228 1 4 664 234 62 0 0 chr9 10376943 10376975 -113699197 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 664 695 278 0 0 chr9 10377016 10377160 -113699012 - B1_Mur3 SINE Alu 0 149 6 4 664 363 292 161 36 chr9 10377181 10377405 -113698767 - L1MD2 LINE L1 -96 6263 6012 4 664 2228 132 132 2 chr9 10377615 10377836 -113698336 - RLTR11B LTR ERVK 0 453 201 4 664 1005 124 0 0 chr9 10377836 10377997 -113698175 + (TTCTCC)n Simple_repeat Simple_repeat 1 161 0 4 664 2228 132 132 2 chr9 10377997 10378176 -113697996 - RLTR11B LTR ERVK -253 200 2 4 664 23 0 0 0 chr9 10381303 10381326 -113694846 + AT_rich Low_complexity Low_complexity 1 23 0 4 664 984 241 14 24 chr9 10383261 10383469 -113692703 - B3 SINE B2 -5 211 6 4 664 603 303 5 41 chr9 10383469 10383665 -113692507 - B3A SINE B2 -5 193 5 4 664 572 160 0 8 chr9 10383678 10383798 -113692374 + CT-rich Low_complexity Low_complexity 2 120 0 4 664 1128 140 0 16 chr9 10384739 10384928 -113691244 - B2_Mm2 SINE B2 -8 187 2 4 664 358 339 65 85 chr9 10385115 10385363 -113690809 + MTEa LTR MaLR 129 371 -8 4 664 294 106 0 0 chr9 10386044 10386091 -113690081 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 664 566 268 14 0 chr9 10386685 10386827 -113689345 - B1_Mur1 SINE Alu -5 144 1 4 664 320 308 28 14 chr9 10387428 10387573 -113688599 + GA-rich Low_complexity Low_complexity 2 148 0 4 664 616 264 43 11 chr9 10388794 10388978 -113687194 + B3 SINE B2 27 216 0 4 664 297 0 0 0 chr9 10390693 10390726 -113685446 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 664 351 0 0 0 chr9 10390726 10390764 -113685408 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 664 26 50 0 0 chr9 10390764 10390804 -113685368 + AT_rich Low_complexity Low_complexity 1 40 0 4 664 219 146 0 0 chr9 10391477 10391518 -113684654 + (T)n Simple_repeat Simple_repeat 1 41 0 4 664 183 80 0 0 chr9 10392059 10392084 -113684088 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 4 664 189 0 0 0 chr9 10392776 10392797 -113683375 + (T)n Simple_repeat Simple_repeat 1 21 0 4 664 1045 65 0 0 chr9 10392797 10392935 -113683237 - B1_Mus2 SINE Alu 0 147 10 4 664 286 230 28 83 chr9 10393892 10394000 -113682172 - PB1D10 SINE Alu -43 105 4 4 664 1505 300 58 45 chr9 10394885 10395522 -113680650 + Lx9 LINE L1 6868 7499 -145 4 664 367 106 30 0 chr9 10395522 10395588 -113680584 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 664 1505 300 58 45 chr9 10395588 10395690 -113680482 + Lx9 LINE L1 7500 7617 -27 4 664 225 260 35 105 chr9 10396056 10396284 -113679888 - Charlie1 DNA MER1_type -27 2754 2543 4 664 2181 182 61 34 chr9 10396491 10396996 -113679176 + RLTR11A LTR ERVK 7 525 -3 4 664 236 233 33 0 chr9 10397301 10397361 -113678811 - Charlie1 DNA MER1_type -484 2297 2236 4 664 351 0 0 0 chr9 10397687 10397726 -113678446 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 664 290 288 91 55 chr9 10397782 10397947 -113678225 - Charlie1 DNA MER1_type -1066 1715 1545 4 664 343 344 8 45 chr9 10397923 10398057 -113678115 - RSINE1 SINE B4 -4 161 33 4 664 251 307 123 23 chr9 10398077 10398207 -113677965 + Charlie1a DNA MER1_type 466 608 -847 4 664 243 0 0 0 chr9 10398399 10398426 -113677746 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 664 1056 58 14 7 chr9 10398429 10398569 -113677603 - B1_Mm SINE Alu -6 141 1 4 664 1388 195 54 83 chr9 10398911 10399319 -113676853 - RMER1C Other Other 0 1342 947 4 664 295 295 52 10 chr9 10399325 10399421 -113676751 - RMER15 LTR ERVL -201 374 275 4 664 370 301 19 0 chr9 10400630 10400733 -113675439 + MLT1A0 LTR MaLR 2 106 -259 4 664 267 79 0 0 chr9 10400924 10400962 -113675210 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 664 435 241 12 0 chr9 10400985 10401068 -113675104 - RSINE1 SINE B4 -38 127 44 4 664 572 311 96 55 chr9 10401314 10401607 -113674565 - MER2 DNA MER2_type -14 331 27 4 664 310 259 74 0 chr9 10402746 10402827 -113673345 + MLT1A0 LTR MaLR 310 396 -12 4 664 294 244 22 79 chr9 10403154 10403243 -113672929 + RSINE1 SINE B4 82 165 0 4 664 474 18 0 0 chr9 10404116 10404171 -113672001 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 664 445 312 62 15 chr9 10405630 10405760 -113670412 - B3A SINE B2 -55 143 8 4 664 416 338 115 15 chr9 10407209 10407479 -113668693 + L2a LINE L2 3117 3413 -13 4 664 225 165 38 76 chr9 10408376 10408481 -113667691 + A-rich Low_complexity Low_complexity 4 104 0 4 664 405 0 0 0 chr9 10410893 10410938 -113665234 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 664 24 0 0 0 chr9 10410947 10410971 -113665201 + AT_rich Low_complexity Low_complexity 1 24 0 4 664 21 36 0 0 chr9 10410993 10411021 -113665151 + AT_rich Low_complexity Low_complexity 1 28 0 4 664 307 295 73 45 chr9 10411318 10411428 -113664744 + MLT1H2 LTR MaLR 70 182 -307 4 664 1704 309 90 0 chr9 10411483 10412071 -113664101 + Lx8 LINE L1 6485 7125 -348 4 664 324 48 0 0 chr9 10412302 10412344 -113663828 + (A)n Simple_repeat Simple_repeat 1 42 0 5 664 501 249 33 42 chr9 10412683 10412897 -113663275 - L1MC3 LINE L1 -637 7148 6937 5 664 29 28 0 0 chr9 10412946 10412982 -113663190 + AT_rich Low_complexity Low_complexity 1 36 0 5 664 224 225 0 0 chr9 10412985 10413025 -113663147 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 664 433 279 165 70 chr9 10413049 10413292 -113662880 - B4 SINE B4 -18 274 9 5 664 947 292 136 47 chr9 10413334 10414380 -113661792 - L1MC3 LINE L1 -931 6854 5716 5 664 634 329 24 14 chr9 10414400 10414610 -113661562 - ID_B1 SINE B4 -10 214 3 5 664 23 33 0 0 chr9 10414675 10414705 -113661467 + AT_rich Low_complexity Low_complexity 1 30 0 5 664 2784 132 6 30 chr9 10415399 10415867 -113660305 - L1_Mus4 LINE L1 -2 6634 6178 5 664 23 0 0 0 chr9 10417277 10417300 -113658872 + AT_rich Low_complexity Low_complexity 1 23 0 5 664 5669 89 41 1 chr9 10417606 10418427 -113657745 + Lx3_Mus LINE L1 6156 7009 0 5 664 513 280 0 162 chr9 10418466 10418645 -113657527 + RSINE1 SINE B4 16 165 0 5 664 1632 244 19 36 chr9 10419244 10419267 -113656905 - MTD LTR MaLR -6 413 397 5 664 234 0 0 0 chr9 10419267 10419293 -113656879 + (TTA)n Simple_repeat Simple_repeat 2 27 0 5 664 1632 244 19 36 chr9 10419293 10419689 -113656483 - MTD LTR MaLR -23 396 1 5 664 554 93 12 0 chr9 10420416 10420502 -113655670 + (TC)n Simple_repeat Simple_repeat 1 87 0 5 664 431 165 0 12 chr9 10420481 10420567 -113655605 + CT-rich Low_complexity Low_complexity 2 86 0 5 664 946 131 0 0 chr9 10420570 10420715 -113655457 - B1_Mus1 SINE Alu -2 146 2 5 664 26 30 0 0 chr9 10421099 10421132 -113655040 + AT_rich Low_complexity Low_complexity 1 33 0 5 664 348 24 0 0 chr9 10421641 10421682 -113654490 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 664 2678 129 9 22 chr9 10422260 10422705 -113653467 - L1_Mus4 LINE L1 -6 6630 6192 5 664 5621 152 7 1 chr9 10422705 10423802 -113652370 + Lx LINE L1 4814 5918 -736 5 664 481 352 0 0 chr9 10424682 10424824 -113651348 + B3A SINE B2 1 142 -56 5 664 23 33 0 0 chr9 10424824 10424854 -113651318 + AT_rich Low_complexity Low_complexity 1 30 0 5 664 2010 147 28 19 chr9 10425797 10426157 -113650015 + RLTR11A LTR ERVK 158 520 -8 5 664 267 31 0 0 chr9 10427814 10427846 -113648326 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5 664 519 292 56 61 chr9 10428303 10428500 -113647672 + B3A SINE B2 2 197 -1 5 664 197 159 23 0 chr9 10428500 10428544 -113647628 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 664 282 29 0 0 chr9 10428548 10428583 -113647589 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 664 216 246 17 34 chr9 10428585 10428644 -113647528 + B3A SINE B2 47 104 -94 5 664 246 105 0 0 chr9 10428655 10428693 -113647479 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 664 575 356 10 26 chr9 10428693 10428886 -113647286 + B3A SINE B2 8 197 -1 5 664 338 317 100 5 chr9 10429029 10429229 -113646943 + MER57D LTR ERV1 145 363 -48 5 664 486 294 34 29 chr9 10429248 10429430 -113646742 + B3A SINE B2 4 172 -21 5 664 399 322 8 3 chr9 10429793 10429939 -113646233 + Lx7 LINE L1 5657 5809 -482 5 664 33365 90 11 14 chr9 10430730 10436703 -113639469 + L1Md_F2 LINE L1 603 6559 -23 5 664 468 51 0 0 chr9 10436710 10436769 -113639403 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 664 3000 23 0 9 chr9 10436889 10437238 -113638934 + ORR1A0 LTR MaLR 1 346 0 5 664 9841 54 6 1 chr9 10437245 10438561 -113637611 + ORR1A0-int LTR MaLR 471 1792 0 5 664 2987 32 0 0 chr9 10438561 10438907 -113637265 + ORR1A0 LTR MaLR 1 346 0 5 664 279 0 0 0 chr9 10439202 10439233 -113636939 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 5 664 596 319 30 0 chr9 10440944 10441110 -113635062 - B3A SINE B2 -26 172 2 5 664 840 265 47 0 chr9 10441322 10441533 -113634639 - ID_B1 SINE B4 -2 222 2 5 664 304 321 99 5 chr9 10441875 10442097 -113634075 + Charlie5 DNA MER1_type 2357 2599 -25 5 664 24 67 0 0 chr9 10442531 10442576 -113633596 + AT_rich Low_complexity Low_complexity 1 45 0 5 664 360 0 0 0 chr9 10442765 10442805 -113633367 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 664 222 37 0 0 chr9 10442805 10442831 -113633341 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 664 184 303 98 73 chr9 10443210 10443292 -113632880 + MER5B DNA MER1_type 21 104 -74 5 664 1834 188 78 12 chr9 10443863 10444208 -113631964 - ORR1C1 LTR MaLR 0 378 11 5 664 21 0 0 0 chr9 10444222 10444243 -113631929 + AT_rich Low_complexity Low_complexity 1 21 0 5 664 426 149 20 10 chr9 10445616 10445718 -113630454 + CT-rich Low_complexity Low_complexity 2 104 0 5 664 222 37 0 0 chr9 10445831 10445858 -113630314 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 664 383 395 20 0 chr9 10445968 10446120 -113630052 - B4A SINE B4 -105 187 33 5 664 2727 63 4 118 chr9 10446133 10446174 -113629998 + MTB LTR MaLR 1 41 -359 5 664 1159 70 64 0 chr9 10446174 10446346 -113629826 + L1Md_A LINE L1 6398 6580 -2 5 664 2727 63 4 118 chr9 10446346 10446755 -113629417 + MTB LTR MaLR 42 400 0 5 664 500 251 31 57 chr9 10448672 10448866 -113627306 + RLTR40 LTR ERVK 50 238 -579 5 664 315 0 0 0 chr9 10448921 10448956 -113627216 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 664 302 165 13 0 chr9 10448958 10449037 -113627135 + GA-rich Low_complexity Low_complexity 2 81 0 5 664 1910 169 15 58 chr9 10449289 10449684 -113626488 + ORR1C1 LTR MaLR 1 378 0 5 664 297 75 0 0 chr9 10451024 10451064 -113625108 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 664 908 277 138 3 chr9 10451482 10451822 -113624350 + Lx8 LINE L1 6707 7092 -381 5 664 394 291 83 24 chr9 10451870 10452039 -113624133 + B3A SINE B2 4 182 -16 5 664 4260 134 19 1 chr9 10452136 10452817 -113623355 - Lx2 LINE L1 -1 6996 6304 5 664 2329 178 61 2 chr9 10453140 10453596 -113622576 - Lx4B LINE L1 -607 6451 5969 5 664 24 32 0 0 chr9 10454073 10454104 -113622068 + AT_rich Low_complexity Low_complexity 1 31 0 5 664 405 359 46 0 chr9 10454134 10454265 -113621907 - RSINE1 SINE B4 -13 152 16 5 664 460 303 52 41 chr9 10454322 10454494 -113621678 - ID_B1 SINE B4 -49 175 2 5 664 673 336 58 36 chr9 10455681 10455956 -113620216 + B4A SINE B4 7 287 -5 5 664 392 161 12 0 chr9 10455973 10456054 -113620118 + (CATA)n Simple_repeat Simple_repeat 2 83 0 5 664 265 256 0 25 chr9 10456589 10456669 -113619503 + CT-rich Low_complexity Low_complexity 2 79 0 5 664 717 254 254 75 chr9 10456711 10457163 -113619009 - MT2A LTR ERVL 0 533 1 5 664 298 346 77 41 chr9 10457230 10457426 -113618746 + B4A SINE B4 8 210 -82 5 664 264 120 0 0 chr9 10458870 10458920 -113617252 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 5 664 655 284 77 87 chr9 10458922 10459208 -113616964 - B4A SINE B4 0 292 10 5 664 205 125 18 18 chr9 10459309 10459366 -113616806 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 664 1668 187 28 5 chr9 10459393 10459743 -113616429 + ORR1C1 LTR MaLR 1 367 0 5 664 468 258 46 15 chr9 10459928 10460058 -113616114 + B1F SINE Alu 14 147 -2 5 664 297 333 37 43 chr9 10460454 10460617 -113615555 - B3A SINE B2 0 198 37 5 664 30 100 0 0 chr9 10463653 10463753 -113612419 + AT_rich Low_complexity Low_complexity 1 100 0 5 664 643 320 42 46 chr9 10464249 10464534 -113611638 - B4 SINE B4 0 292 9 5 664 641 247 147 0 chr9 10464861 10465031 -113611141 + B3 SINE B2 3 197 -19 5 664 6458 94 0 4 chr9 10465052 10465995 -113610177 - L1Md_F2 LINE L1 -1518 4365 3427 5 664 9189 83 1 0 chr9 10465994 10467225 -113608947 + L1Md_F2 LINE L1 4355 5586 -297 5 664 7731 52 13 3 chr9 10467226 10468199 -113607973 + L1Md_F2 LINE L1 5588 6570 -12 5 664 5765 68 30 1 chr9 10468196 10468959 -113607213 + L1_Mus1 LINE L1 5783 6567 0 5 664 636 50 0 0 chr9 10469228 10469308 -113606864 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 664 2796 44 9 0 chr9 10469398 10469741 -113606431 - ORR1A1 LTR MaLR 0 346 1 5 664 369 349 135 16 chr9 10469795 10470040 -113606132 - B4A SINE B4 -18 274 1 5 664 481 319 0 7 chr9 10471812 10471951 -113604221 + B3A SINE B2 13 150 -48 5 664 397 262 74 4 chr9 10473069 10473247 -113602925 - B3 SINE B2 0 216 6 5 664 304 70 47 0 chr9 10473981 10474024 -113602148 + RMER3D-int LTR ERVK 2277 2321 -521 5 664 321 26 0 0 chr9 10474214 10474252 -113601920 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 664 970 62 0 72 chr9 10474609 10474802 -113601370 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 664 504 283 156 21 chr9 10475061 10475350 -113600822 + RMER5 LTR ERV1 200 527 -7 5 664 22 0 0 0 chr9 10475659 10475681 -113600491 + AT_rich Low_complexity Low_complexity 1 22 0 5 664 195 42 0 0 chr9 10476039 10476063 -113600109 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 664 252 0 0 0 chr9 10476361 10476389 -113599783 + (A)n Simple_repeat Simple_repeat 1 28 0 5 664 832 143 7 7 chr9 10476426 10476581 -113599591 + CT-rich Low_complexity Low_complexity 2 156 0 5 664 256 300 28 14 chr9 10477182 10477253 -113598919 + PB1D7 SINE Alu 14 85 -35 5 664 23 0 0 0 chr9 10477253 10477276 -113598896 + AT_rich Low_complexity Low_complexity 1 23 0 5 664 627 264 0 0 chr9 10478355 10478480 -113597692 + B1_Mur1 SINE Alu 3 127 -22 5 664 216 326 60 80 chr9 10478861 10479011 -113597161 - L4 LINE RTE -157 1872 1726 5 664 231 409 22 11 chr9 10479334 10479423 -113596749 + RSINE1 SINE B4 6 95 -70 5 664 1068 48 0 0 chr9 10479423 10479549 -113596623 + L1Md_F2 LINE L1 5461 5586 -297 5 664 7964 50 8 0 chr9 10479549 10480537 -113595635 + L1Md_F2 LINE L1 5587 6582 0 5 664 1504 202 79 21 chr9 10480821 10481200 -113594972 - MTD LTR MaLR 0 419 19 5 664 414 0 0 0 chr9 10481200 10481246 -113594926 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 664 195 42 0 0 chr9 10481725 10481749 -113594423 + (T)n Simple_repeat Simple_repeat 1 24 0 6 664 1077 69 14 0 chr9 10481749 10481894 -113594278 - B1_Mus2 SINE Alu 0 147 1 6 664 246 301 106 80 chr9 10482870 10482973 -113593199 - L1ME2z LINE L1 -8 6436 6338 6 664 1481 184 184 0 chr9 10482973 10483289 -113592883 + ORR1C1 LTR MaLR 5 378 0 6 664 246 301 106 80 chr9 10483289 10483384 -113592788 - L1ME2z LINE L1 -107 6337 6233 6 664 207 0 0 0 chr9 10484126 10484149 -113592023 + (A)n Simple_repeat Simple_repeat 1 23 0 6 664 1061 93 0 0 chr9 10484159 10484298 -113591874 + B1_Mus1 SINE Alu 1 139 -9 6 664 207 0 0 0 chr9 10484298 10484321 -113591851 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 664 21 36 0 0 chr9 10484619 10484647 -113591525 + AT_rich Low_complexity Low_complexity 1 28 0 6 664 189 196 0 0 chr9 10485149 10485200 -113590972 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 664 294 230 25 63 chr9 10485237 10485316 -113590856 - ID4 SINE ID -6 77 2 6 10 3156 66 26 0 chr9 10485354 10485953 -113590219 - ORR1A1-int LTR MaLR -1366 426 1 6 665 2570 68 30 0 chr9 10485953 10486013 -113590159 - ORR1A1 LTR MaLR 0 346 287 6 665 186 71 0 0 chr9 10486013 10486041 -113590131 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 665 2570 68 30 0 chr9 10486041 10486316 -113589856 - ORR1A1 LTR MaLR -60 286 2 6 665 538 294 214 7 chr9 10486787 10487101 -113589071 - ORR1E LTR MaLR 0 379 1 6 665 189 280 12 62 chr9 10487746 10487826 -113588346 - L2b LINE L2 -249 3126 3051 6 665 376 304 0 0 chr9 10488298 10488377 -113587795 - ID4_ SINE ID -2 81 3 6 665 586 278 76 49 chr9 10488654 10488690 -113587482 - B3A SINE B2 0 198 170 6 665 222 37 0 0 chr9 10488690 10488717 -113587455 + (TATG)n Simple_repeat Simple_repeat 4 30 0 6 665 586 278 76 49 chr9 10488717 10488865 -113587307 - B3A SINE B2 -29 169 9 6 665 23 0 0 0 chr9 10490013 10490036 -113586136 + AT_rich Low_complexity Low_complexity 1 23 0 6 665 602 39 13 0 chr9 10491121 10491199 -113584973 - B1_Mm SINE Alu -1 146 68 6 665 423 308 8 8 chr9 10491775 10491893 -113584279 - B1F SINE Alu -31 118 1 6 665 2325 215 32 14 chr9 10492012 10492528 -113583644 + RLTR20B2 LTR ERVK 4 560 0 6 665 578 83 32 24 chr9 10492581 10492705 -113583467 + (CAAAA)n Simple_repeat Simple_repeat 2 126 0 6 665 1076 72 0 0 chr9 10493398 10493536 -113582636 - B1_Mus2 SINE Alu -9 138 1 6 665 522 344 19 0 chr9 10493608 10493765 -113582407 + RSINE1 SINE B4 4 163 -2 6 665 2916 234 57 25 chr9 10493815 10494671 -113581501 + L1_Mur3 LINE L1 51 934 -6794 6 665 2810 190 41 53 chr9 10494727 10495427 -113580745 + L1_Mur3 LINE L1 2058 2749 -3131 6 665 8978 183 46 39 chr9 10495442 10497517 -113578655 + L1_Mur3 LINE L1 3225 5314 -566 6 665 1868 215 113 38 chr9 10497520 10497999 -113578173 + RLTR20B3 LTR ERVK 21 535 -42 6 665 585 234 34 13 chr9 10497989 10498166 -113578006 + RLTR20B3 LTR ERVK 90 291 -286 6 665 266 162 34 0 chr9 10498174 10498233 -113577939 - MTC-int LTR MaLR -339 919 869 6 665 3737 168 20 26 chr9 10498235 10498951 -113577221 - Lx4B LINE L1 -710 6348 5638 6 665 5036 171 30 5 chr9 10498950 10499150 -113577022 - Lx4B LINE L1 -1299 4578 4379 6 665 459 0 0 0 chr9 10499150 10499201 -113576971 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 665 5036 171 30 5 chr9 10499201 10500000 -113576172 - Lx4B LINE L1 -1499 4378 3556 6 665 10954 191 11 19 chr9 10500000 10502686 -113573486 - L1_Mur1 LINE L1 -2324 3553 890 1 665 240 305 202 39 chr9 10503942 10504481 -113571691 + Charlie2b DNA MER1_type 1889 2515 -267 2 665 3884 198 29 140 chr9 10505603 10506623 -113569549 + RLTR25B LTR ERVK 1 904 -124 3 665 486 0 0 0 chr9 10506623 10506677 -113569495 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 665 369 43 0 0 chr9 10506677 10506723 -113569449 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 665 3884 198 29 140 chr9 10506723 10506857 -113569315 + RLTR25B LTR ERVK 905 1027 -1 3 665 324 308 11 11 chr9 10506965 10507057 -113569115 - RSINE1 SINE B4 -72 93 2 6 665 230 241 0 17 chr9 10507628 10507687 -113568485 + RLTR25B LTR ERVK 752 809 -219 7 665 396 0 0 0 chr9 10507691 10507735 -113568437 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 665 513 0 0 0 chr9 10507735 10507791 -113568381 + (GA)n Simple_repeat Simple_repeat 2 58 0 9 665 4235 219 79 5 chr9 10507806 10508750 -113567422 + Lx7 LINE L1 6331 7344 -352 1 665 780 28 9 18 chr9 10508765 10508874 -113567298 + (TTCTC)n Simple_repeat Simple_repeat 3 110 0 1 665 826 158 25 22 chr9 10508902 10509308 -113566864 + CT-rich Low_complexity Low_complexity 1 407 0 1 665 611 218 58 44 chr9 10509308 10509534 -113566638 + Lx7 LINE L1 7356 7584 -112 1 665 2368 202 45 10 chr9 10509541 10510030 -113566142 - RLTR11A LTR ERVK -13 515 10 1 665 276 132 6 32 chr9 10510057 10510131 -113566041 + Lx7 LINE L1 7606 7667 -29 1 665 327 249 119 100 chr9 10510336 10510546 -113565626 + MLT1H2 LTR MaLR 276 489 0 1 665 21 107 0 0 chr9 10510605 10510689 -113565483 + AT_rich Low_complexity Low_complexity 1 84 0 1 665 460 358 0 0 chr9 10512014 10512148 -113564024 - B3A SINE B2 -62 136 3 1 665 405 0 0 0 chr9 10512159 10512204 -113563968 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 665 447 19 0 0 chr9 10512204 10512256 -113563916 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 665 460 304 72 23 chr9 10513708 10514034 -113562138 + ORR1E LTR MaLR 3 370 -9 2 665 603 120 0 0 chr9 10514930 10515047 -113561125 + (TC)n Simple_repeat Simple_repeat 2 118 0 2 665 301 386 24 30 chr9 10515115 10515283 -113560889 - B4A SINE B4 -82 210 44 2 665 22 0 0 0 chr9 10515955 10515977 -113560195 + AT_rich Low_complexity Low_complexity 1 22 0 2 665 327 213 364 42 chr9 10516875 10517018 -113559154 - B3A SINE B2 -9 189 1 2 665 228 324 11 202 chr9 10518161 10518339 -113557833 + RSINE1 SINE B4 8 151 -14 2 665 707 302 20 5 chr9 10519292 10519495 -113556677 + B3 SINE B2 11 216 0 2 665 622 306 26 21 chr9 10519787 10520021 -113556151 + Lx5 LINE L1 5835 6069 -981 2 665 1934 250 166 36 chr9 10520010 10520710 -113555462 + Lx6 LINE L1 6670 7460 0 2 665 240 35 0 0 chr9 10521530 10521559 -113554613 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 2 665 403 352 7 7 chr9 10522084 10522224 -113553948 + RSINE1 SINE B4 5 144 -21 3 665 220 363 35 9 chr9 10522713 10522827 -113553345 + L2 LINE L2 524 640 -2779 3 665 295 353 26 19 chr9 10523747 10523903 -113552269 + MER5A1 DNA MER1_type 10 166 0 3 665 1778 231 59 25 chr9 10524065 10524554 -113551618 + MER67C LTR ERV1 206 711 0 3 665 241 333 77 0 chr9 10526957 10527035 -113549137 - B4A SINE B4 -166 126 43 3 665 699 272 70 42 chr9 10527041 10527366 -113548806 + ORR1D2 LTR MaLR 1 365 -5 3 665 2663 30 9 12 chr9 10527745 10528080 -113548092 + L1Md_F2 LINE L1 6247 6580 -2 3 665 2284 231 98 5 chr9 10530356 10530947 -113545225 - RLTR33 LTR ERVK -1 677 9 3 665 226 347 13 26 chr9 10532454 10532531 -113543641 + ID_B1 SINE B4 94 169 -55 3 665 297 333 22 11 chr9 10532463 10532554 -113543618 + PB1D7 SINE Alu 22 113 -7 3 665 282 29 0 0 chr9 10533143 10533178 -113542994 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 4 665 204 139 28 0 chr9 10534939 10534975 -113541197 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 665 524 342 47 55 chr9 10535394 10535648 -113540524 - B4 SINE B4 -2 290 39 4 665 23 0 0 0 chr9 10535814 10535837 -113540335 + AT_rich Low_complexity Low_complexity 1 23 0 4 665 560 72 0 0 chr9 10536387 10536456 -113539716 - L1Md_F2 LINE L1 -929 5655 5587 4 665 7127 51 20 2 chr9 10536462 10537372 -113538800 + L1Md_F2 LINE L1 5651 6576 -6 4 665 360 0 0 0 chr9 10538273 10538313 -113537859 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 665 221 0 35 0 chr9 10538654 10538683 -113537489 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 665 297 0 0 0 chr9 10539274 10539307 -113536865 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 665 180 125 0 0 chr9 10539309 10539341 -113536831 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 665 1138 78 0 0 chr9 10539374 10539516 -113536656 + B1_Mus1 SINE Alu 1 142 -6 4 665 708 74 0 0 chr9 10539544 10539639 -113536533 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 5 665 505 243 67 56 chr9 10539837 10540016 -113536156 - B3A SINE B2 -13 185 5 5 665 216 0 0 0 chr9 10540329 10540353 -113535819 + (T)n Simple_repeat Simple_repeat 1 24 0 5 665 2491 86 66 33 chr9 10540891 10541287 -113534885 + RLTR9E LTR ERVK 1 409 0 5 665 408 161 0 0 chr9 10542487 10542568 -113533604 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 665 1362 95 11 0 chr9 10543007 10543197 -113532975 - B2_Mm1t SINE B2 0 193 2 5 665 452 287 123 25 chr9 10543697 10543940 -113532232 + L1MA6 LINE L1 5798 6064 -236 5 665 193 90 101 29 chr9 10543940 10544009 -113532163 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 5 665 225 268 28 0 chr9 10544030 10544101 -113532071 + L1MA6 LINE L1 6063 6135 -165 5 665 1129 270 88 9 chr9 10544111 10544679 -113531493 - L1M2 LINE L1 -3318 3527 2915 5 665 2797 120 7 7 chr9 10544872 10545309 -113530863 + L1_Mus4 LINE L1 6198 6634 -2 5 665 272 229 81 30 chr9 10545352 10545451 -113530721 - L1M2 LINE L1 -4349 2500 2397 5 665 699 52 0 0 chr9 10545499 10545595 -113530577 + (TC)n Simple_repeat Simple_repeat 1 96 0 6 665 24 0 0 0 chr9 10548753 10548777 -113527395 + AT_rich Low_complexity Low_complexity 1 24 0 6 665 400 363 6 29 chr9 10550628 10550801 -113525371 - MER5B DNA MER1_type -6 172 4 6 665 430 329 12 42 chr9 10551251 10551419 -113524753 + RSINE1 SINE B4 3 165 0 6 665 36492 41 0 4 chr9 10552156 10558383 -113517789 - L1Md_T LINE L1 0 6585 285 6 665 288 253 21 62 chr9 10558557 10558654 -113517518 + MLT1K LTR MaLR 495 587 -8 6 665 370 313 37 0 chr9 10558895 10559029 -113517143 - Lx9 LINE L1 -215 7429 7291 6 665 204 216 0 0 chr9 10559331 10559382 -113516790 + T-rich Low_complexity Low_complexity 1 51 0 6 665 1703 233 41 21 chr9 10559383 10559776 -113516396 + MTD LTR MaLR 14 407 -12 6 665 237 65 0 0 chr9 10560007 10560038 -113516134 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 665 1137 63 0 0 chr9 10560041 10560184 -113515988 - B1_Mus1 SINE Alu -5 143 1 7 665 535 312 47 26 chr9 10560223 10560414 -113515758 + B3A SINE B2 4 198 0 7 665 218 282 84 0 chr9 10560954 10561025 -113515147 + RSINE1 SINE B4 21 97 -68 7 665 26 64 0 0 chr9 10561097 10561144 -113515028 + AT_rich Low_complexity Low_complexity 1 47 0 7 665 1802 185 272 18 chr9 10562132 10562682 -113513490 + Lx9 LINE L1 6911 7600 -44 7 665 326 337 40 182 chr9 10562970 10563129 -113513043 + B4A SINE B4 73 220 -72 7 665 433 331 7 19 chr9 10563129 10563283 -113512889 + RSINE1 SINE B4 4 155 -10 7 665 326 337 40 182 chr9 10563283 10563370 -113512802 + B4A SINE B4 221 284 -8 7 665 300 143 0 0 chr9 10563397 10563453 -113512719 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 665 1223 77 127 0 chr9 10563487 10563668 -113512504 - L1_Mus1 LINE L1 0 6567 6364 7 665 225 65 0 0 chr9 10564326 10564357 -113511815 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 665 568 326 113 59 chr9 10564392 10564851 -113511321 + RMER5 LTR ERV1 40 523 -11 8 665 303 26 0 0 chr9 10566512 10566550 -113509622 - tRNA-Gln-CAG tRNA tRNA -37 38 1 8 665 312 273 52 104 chr9 10566931 10566960 -113509212 - B2_Mm1t SINE B2 -10 183 156 8 665 579 15 0 0 chr9 10566960 10567028 -113509144 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 665 438 273 52 104 chr9 10567028 10567190 -113508982 - B3A SINE B2 -30 168 2 8 665 47 33 0 0 chr9 10568238 10568299 -113507873 + AT_rich Low_complexity Low_complexity 1 61 0 8 665 263 259 25 0 chr9 10568695 10568776 -113507396 + (TCTCTG)n Simple_repeat Simple_repeat 6 88 0 8 665 208 100 50 0 chr9 10569165 10569205 -113506967 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 8 665 884 166 25 34 chr9 10569372 10569609 -113506563 + Lx4B LINE L1 6808 7042 -16 8 665 249 33 0 0 chr9 10569609 10569639 -113506533 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 8 665 471 312 51 0 chr9 10569832 10569989 -113506183 + B3A SINE B2 16 180 -18 8 665 235 333 0 17 chr9 10570343 10570401 -113505771 - tRNA-Ala-GCY_ tRNA tRNA -18 57 1 9 665 21 0 0 0 chr9 10570480 10570501 -113505671 + AT_rich Low_complexity Low_complexity 1 21 0 9 665 702 317 35 5 chr9 10571341 10571544 -113504628 + B4A SINE B4 2 210 -82 9 665 312 27 0 0 chr9 10572065 10572102 -113504070 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 665 344 197 26 13 chr9 10572400 10572477 -113503695 + L2a LINE L2 3348 3425 -1 9 665 407 309 103 109 chr9 10572826 10573338 -113502834 + MER67D LTR ERV1 2 510 -4 9 665 23 33 0 0 chr9 10573504 10573534 -113502638 + AT_rich Low_complexity Low_complexity 1 30 0 9 665 207 69 0 0 chr9 10573649 10573678 -113502494 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 9 665 21 36 0 0 chr9 10574127 10574155 -113502017 + AT_rich Low_complexity Low_complexity 1 28 0 9 665 1250 112 0 10 chr9 10574236 10574434 -113501738 - L1Md_F2 LINE L1 -12 6570 6375 9 665 385 283 12 81 chr9 10574568 10574741 -113501431 + Lx7 LINE L1 7023 7183 -513 1 665 488 286 115 13 chr9 10574738 10574972 -113501200 - Lx8 LINE L1 -22 7451 7194 1 665 249 210 0 0 chr9 10576900 10576962 -113499210 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 665 316 173 0 36 chr9 10576961 10577045 -113499127 + GA-rich Low_complexity Low_complexity 3 83 0 1 665 23 0 0 0 chr9 10578888 10578911 -113497261 + AT_rich Low_complexity Low_complexity 1 23 0 1 665 772 282 19 121 chr9 10579038 10579244 -113496928 + B3 SINE B2 3 189 -27 1 665 804 161 14 0 chr9 10579251 10579394 -113496778 - B1_Mus1 SINE Alu -2 146 2 1 665 887 164 0 14 chr9 10579929 10580077 -113496095 + (CAGAGA)n Simple_repeat Simple_repeat 3 148 0 1 665 230 167 0 85 chr9 10580078 10580137 -113496035 + 4.5SRNA scRNA scRNA 33 86 -8 1 665 620 135 37 28 chr9 10580087 10580194 -113495978 + B1_Mur4 SINE Alu 43 150 0 1 665 456 313 44 15 chr9 10580286 10580422 -113495750 + B1F SINE Alu 10 149 0 1 665 306 338 47 86 chr9 10580444 10581505 -113494667 + L1M3 LINE L1 4488 5506 -665 1 665 17691 95 22 3 chr9 10581548 10585041 -113491131 - L1VL4 LINE L1 0 3559 1 1 665 351 328 7 103 chr9 10586412 10586548 -113489624 - PB1 SINE Alu -2 125 3 1 665 352 338 99 31 chr9 10586561 10586703 -113489469 + MLT-int LTR MaLR 354 495 -1240 1 665 534 31 0 0 chr9 10586703 10586767 -113489405 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 665 352 338 99 31 chr9 10586767 10586847 -113489325 + MLT-int LTR MaLR 496 590 -1145 1 665 1595 55 40 0 chr9 10587140 10587340 -113488832 + L1Md_F2 LINE L1 5378 5585 -298 1 665 7459 68 2 20 chr9 10587341 10588349 -113487823 + L1Md_F2 LINE L1 5587 6576 -6 1 665 2384 201 60 8 chr9 10588489 10588990 -113487182 - RLTR11A2 LTR ERVK 0 527 1 1 665 186 118 0 0 chr9 10589513 10589547 -113486625 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 665 269 26 0 26 chr9 10589557 10589596 -113486576 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1 665 1085 63 0 40 chr9 10589596 10589744 -113486428 - B1_Mus2 SINE Alu -4 143 2 1 665 277 374 37 0 chr9 10589859 10589966 -113486206 + MIRb SINE MIR 49 159 -109 1 665 1901 147 46 0 chr9 10589968 10590274 -113485898 - Lx2B LINE L1 -326 6674 6355 1 665 1456 173 45 7 chr9 10590274 10590565 -113485607 + Lx2B LINE L1 6695 6996 -4 1 665 1143 289 70 12 chr9 10591736 10592166 -113484006 - Lx9 LINE L1 -19 7625 7171 1 665 592 260 113 13 chr9 10592202 10592432 -113483740 + Lx9 LINE L1 6860 7112 -532 1 665 468 312 70 0 chr9 10592511 10592639 -113483533 + RSINE1 SINE B4 7 143 -22 1 665 452 305 82 82 chr9 10594003 10594311 -113481861 + RMER10A LTR ERVL 61 372 -70 1 665 356 0 23 0 chr9 10594311 10594355 -113481817 + (CAAAA)n Simple_repeat Simple_repeat 5 49 0 1 665 452 305 82 82 chr9 10594355 10594414 -113481758 + RMER10A LTR ERVL 373 428 -14 1 665 1695 189 44 35 chr9 10595164 10595760 -113480412 - RLTR31_Mur LTR ERVK 0 561 1 1 665 5279 93 1 4 chr9 10596260 10596996 -113479176 - L1_Mus1 LINE L1 -1 6566 5833 1 665 5535 79 13 2 chr9 10596996 10597771 -113478401 + Lx4A LINE L1 5073 5862 -1196 1 665 1502 198 71 164 chr9 10598353 10598934 -113477238 - RLTR24 LTR ERV1 0 529 3 1 665 235 167 179 15 chr9 10599336 10599403 -113476769 - L1M5 LINE L1 -547 5693 5616 1 665 202 322 0 0 chr9 10599555 10599614 -113476558 + (CATG)n Simple_repeat Simple_repeat 1 59 0 1 665 1224 102 0 33 chr9 10600059 10600080 -113476092 - B2_Mm2 SINE B2 -18 177 162 1 665 183 80 0 0 chr9 10600080 10600105 -113476067 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 665 1224 102 0 33 chr9 10600105 10600266 -113475906 - B2_Mm2 SINE B2 -34 161 1 1 665 969 306 23 0 chr9 10600354 10600619 -113475553 + MTE2b LTR MaLR 1 271 -108 1 665 444 316 6 6 chr9 10601193 10601349 -113474823 - MER2 DNA MER2_type -78 267 112 1 665 245 290 16 16 chr9 10601433 10601496 -113474676 - MER2 DNA MER2_type -273 72 10 1 665 337 171 0 22 chr9 10602235 10602325 -113473847 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 665 537 328 134 13 chr9 10602326 10602564 -113473608 - B4A SINE B4 -1 291 25 1 665 1136 261 73 28 chr9 10603563 10603918 -113472254 + L1_Mur3 LINE L1 5507 5877 -3 1 665 1166 62 7 0 chr9 10604088 10604234 -113471938 + B1_Mm SINE Alu 1 147 0 1 665 207 0 0 0 chr9 10604236 10604259 -113471913 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 665 22 0 0 0 chr9 10604464 10604486 -113471686 + AT_rich Low_complexity Low_complexity 1 22 0 1 665 31828 95 7 9 chr9 10605565 10610957 -113465215 + L1Md_F2 LINE L1 205 5585 -298 1 665 7056 89 10 4 chr9 10610959 10611945 -113464227 + L1Md_F2 LINE L1 5588 6579 -3 1 665 645 199 0 0 chr9 10612006 10612142 -113464030 + A-rich Low_complexity Low_complexity 1 136 0 1 665 471 183 45 71 chr9 10612142 10612254 -113463918 - B1F1 SINE Alu -39 110 2 1 665 22 35 0 0 chr9 10612571 10612600 -113463572 + AT_rich Low_complexity Low_complexity 1 29 0 1 665 304 293 21 76 chr9 10612973 10613114 -113463058 + MER2 DNA MER2_type 91 223 -122 1 665 469 311 23 8 chr9 10613114 10613247 -113462925 + RSINE1 SINE B4 3 137 -28 1 665 192 40 0 0 chr9 10613286 10613311 -113462861 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 665 210 111 44 0 chr9 10613684 10613729 -113462443 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 665 255 351 59 7 chr9 10614158 10614293 -113461879 - MER91A DNA Tip100 -32 164 23 1 665 21 36 0 0 chr9 10616004 10616032 -113460140 + AT_rich Low_complexity Low_complexity 1 28 0 1 665 733 209 8 0 chr9 10616222 10616351 -113459821 - B1_Mur4 SINE Alu -20 130 1 1 666 489 283 114 33 chr9 10617098 10617405 -113458767 - L1_Mur3 LINE L1 -514 5366 5035 1 666 363 105 0 0 chr9 10617579 10617636 -113458536 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 666 21 0 0 0 chr9 10617801 10617822 -113458350 + AT_rich Low_complexity Low_complexity 1 21 0 1 666 250 374 60 16 chr9 10618050 10618232 -113457940 - L3 LINE CR1 -256 4233 4044 1 666 696 152 36 0 chr9 10619143 10619308 -113456864 + CT-rich Low_complexity Low_complexity 2 172 0 1 666 236 345 33 33 chr9 10619317 10619407 -113456765 - B1F1 SINE Alu -59 90 1 1 666 21 0 0 0 chr9 10619900 10619921 -113456251 + AT_rich Low_complexity Low_complexity 1 21 0 1 666 21 0 0 0 chr9 10620440 10620461 -113455711 + AT_rich Low_complexity Low_complexity 1 21 0 1 666 23 54 0 0 chr9 10621040 10621077 -113455095 + AT_rich Low_complexity Low_complexity 1 37 0 1 666 320 274 103 26 chr9 10622159 10622275 -113453897 + ID_B1 SINE B4 97 221 -3 1 666 929 279 10 0 chr9 10622595 10622803 -113453369 + B3 SINE B2 7 216 0 1 666 429 36 0 0 chr9 10624011 10624066 -113452106 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 666 519 60 0 0 chr9 10624066 10624133 -113452039 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 1 666 379 341 50 29 chr9 10624195 10624334 -113451838 - B3A SINE B2 0 198 57 1 666 574 264 144 0 chr9 10624664 10624838 -113451334 + B3 SINE B2 1 199 -17 1 666 1201 162 14 0 chr9 10625237 10625447 -113450725 + L1_Mur2 LINE L1 5041 5253 -624 1 666 236 288 40 27 chr9 10625447 10625522 -113450650 + MER50B LTR ERV1 387 462 -235 1 666 239 72 0 23 chr9 10625525 10625568 -113450604 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 666 1095 89 14 0 chr9 10625576 10625722 -113450450 - B1_Mus1 SINE Alu 0 148 1 1 666 411 149 0 0 chr9 10625744 10625811 -113450361 + Lx LINE L1 5309 5375 -508 1 666 2941 99 13 20 chr9 10625812 10626266 -113449906 + MT2C_Mm LTR ERVL 25 475 0 1 666 6579 111 55 7 chr9 10626282 10627472 -113448700 + Lx LINE L1 5404 6647 -7 1 666 228 35 0 0 chr9 10627475 10627504 -113448668 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 666 544 283 28 92 chr9 10627508 10627726 -113448446 - B3 SINE B2 0 216 13 1 666 359 299 0 42 chr9 10628264 10628407 -113447765 + CT-rich Low_complexity Low_complexity 4 140 0 1 666 29174 129 12 36 chr9 10628799 10635198 -113440974 + L1_Mus2 LINE L1 353 6566 0 1 666 5397 81 19 33 chr9 10635468 10635790 -113440382 + RLTR22_Mus LTR ERVK 1 311 -1497 1 666 7688 1 0 0 chr9 10635790 10636638 -113439534 + L1Md_A LINE L1 5735 6582 0 1 666 5397 81 19 33 chr9 10636638 10637142 -113439030 + RLTR22_Mus LTR ERVK 312 816 -992 1 666 362 303 48 75 chr9 10637393 10637621 -113438551 + RMER12 LTR ERVK 1101 1322 0 1 666 407 19 0 19 chr9 10637695 10637748 -113438424 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 666 21 0 0 0 chr9 10640494 10640515 -113435657 + AT_rich Low_complexity Low_complexity 1 21 0 1 666 231 279 88 0 chr9 10640631 10640699 -113435473 - RLTR28B LTR ERVL -68 413 340 1 666 21 57 0 0 chr9 10641119 10641154 -113435018 + AT_rich Low_complexity Low_complexity 1 35 0 1 666 229 296 139 18 chr9 10641493 10641658 -113434514 - MLT2C2 LTR ERVL -279 185 1 1 666 1936 120 83 0 chr9 10642287 10642588 -113433584 + ORR1A2 LTR MaLR 2 327 0 1 666 201 139 0 0 chr9 10642773 10642816 -113433356 + (A)n Simple_repeat Simple_repeat 1 43 0 1 666 21 36 0 0 chr9 10643535 10643563 -113432609 + AT_rich Low_complexity Low_complexity 1 28 0 1 666 21 36 0 0 chr9 10644007 10644035 -113432137 + AT_rich Low_complexity Low_complexity 1 28 0 1 666 286 360 43 0 chr9 10644054 10644193 -113431979 - RSINE1 SINE B4 -16 149 5 1 666 536 252 28 21 chr9 10644508 10644650 -113431522 + B1_Mur1 SINE Alu 6 148 -1 1 666 356 110 0 47 chr9 10644732 10644818 -113431354 + A-rich Low_complexity Low_complexity 1 82 0 1 666 799 191 0 21 chr9 10646785 10646929 -113429243 + B1_Mur4 SINE Alu 2 142 -8 1 666 522 31 0 0 chr9 10646929 10646993 -113429179 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 666 530 226 8 17 chr9 10648474 10648591 -113427581 + B3 SINE B2 2 117 -99 1 666 29 60 0 0 chr9 10648659 10648709 -113427463 + AT_rich Low_complexity Low_complexity 1 50 0 1 666 716 219 33 33 chr9 10648962 10649207 -113426965 + Lx7 LINE L1 7447 7691 -5 1 666 372 343 106 0 chr9 10649217 10649491 -113426681 + L1M1 LINE L1 5476 5778 -522 2 666 21 36 0 0 chr9 10650374 10650402 -113425770 + AT_rich Low_complexity Low_complexity 1 28 0 2 666 635 317 20 2 chr9 10650441 10650651 -113425521 - B3A SINE B2 0 216 2 2 666 696 86 2 0 chr9 10650857 10650956 -113425216 - L1_Mus4 LINE L1 -462 6174 6086 2 666 3985 125 3 13 chr9 10651281 10652053 -113424119 + L1_Mus3 LINE L1 6006 6638 0 2 666 234 268 12 179 chr9 10652495 10652663 -113423509 - B1F2 SINE Alu 0 149 10 2 666 243 333 0 0 chr9 10652871 10652931 -113423241 + RSINE1 SINE B4 73 132 -33 2 666 279 0 0 0 chr9 10652970 10653001 -113423171 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2 666 222 37 0 0 chr9 10654166 10654193 -113421979 + (A)n Simple_repeat Simple_repeat 1 27 0 2 666 180 77 0 0 chr9 10654331 10654357 -113421815 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 666 396 0 0 0 chr9 10657816 10657860 -113418312 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 666 188 35 35 0 chr9 10658090 10658119 -113418053 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2 666 240 35 0 0 chr9 10658119 10658147 -113418025 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2 666 2481 128 10 0 chr9 10660058 10660447 -113415725 - Lx3B LINE L1 -3 6970 6578 2 666 474 65 0 0 chr9 10660677 10660739 -113415433 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 666 448 266 152 20 chr9 10660822 10661164 -113415008 - Ricksha_0 DNA MuDR -352 1381 995 2 666 399 293 32 70 chr9 10661191 10661349 -113414823 + RSINE1 SINE B4 14 165 0 2 666 528 311 44 0 chr9 10661527 10661752 -113414420 - Ricksha_0 DNA MuDR -1128 605 371 2 666 395 269 93 0 chr9 10662146 10662254 -113413918 + RSINE1 SINE B4 8 125 -40 2 666 203 162 0 0 chr9 10662267 10662304 -113413868 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 666 27 0 0 0 chr9 10662495 10662522 -113413650 + AT_rich Low_complexity Low_complexity 1 27 0 2 666 301 191 35 9 chr9 10662546 10662662 -113413510 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 666 213 178 0 0 chr9 10664292 10664337 -113411835 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 2 666 200 279 29 0 chr9 10664362 10664430 -113411742 + CT-rich Low_complexity Low_complexity 3 72 0 2 666 270 0 0 0 chr9 10665743 10665773 -113410399 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 666 883 50 16 0 chr9 10665773 10665893 -113410279 + (GA)n Simple_repeat Simple_repeat 2 124 0 2 666 258 321 35 12 chr9 10665897 10665982 -113410190 + Lx8 LINE L1 7095 7181 -292 2 666 1757 88 3 74 chr9 10666179 10666462 -113409710 - L1_Mus2 LINE L1 0 6566 6304 2 666 234 206 31 16 chr9 10666708 10666772 -113409400 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 666 212 253 11 0 chr9 10666795 10666886 -113409286 + (TG)n Simple_repeat Simple_repeat 1 92 0 2 666 392 207 9 0 chr9 10666964 10667080 -113409092 + (TG)n Simple_repeat Simple_repeat 2 118 0 2 666 297 254 204 22 chr9 10667089 10667226 -113408946 - RSINE1 SINE B4 0 165 4 2 666 971 301 53 27 chr9 10668890 10669228 -113406944 - ORR1D2 LTR MaLR -21 349 3 2 666 985 159 91 5 chr9 10669864 10670072 -113406100 - URR1A DNA MER1_type 0 226 1 2 666 1053 102 0 7 chr9 10671479 10671613 -113404559 + B1_Mm SINE Alu 1 134 -13 2 666 747 87 0 0 chr9 10671613 10671717 -113404455 + (CAAAG)n Simple_repeat Simple_repeat 1 104 0 2 666 1053 102 0 7 chr9 10671717 10671730 -113404442 + B1_Mm SINE Alu 135 147 0 2 666 401 289 59 18 chr9 10671771 10671940 -113404232 + B3A SINE B2 5 180 -18 2 666 320 0 0 82 chr9 10672220 10672236 -113403936 + (T)n Simple_repeat Simple_repeat 1 16 0 2 666 1223 48 0 0 chr9 10672236 10672383 -113403789 - B1_Mm SINE Alu 0 147 1 2 666 320 0 0 82 chr9 10672383 10672415 -113403757 + (T)n Simple_repeat Simple_repeat 1 29 0 2 666 248 282 91 8 chr9 10672433 10672565 -113403607 - L1M3 LINE L1 -286 5897 5755 2 666 307 149 90 0 chr9 10672909 10672976 -113403196 - L3 LINE CR1 -294 4195 4123 2 666 180 0 0 0 chr9 10673477 10673497 -113402675 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 666 269 330 0 32 chr9 10673548 10673642 -113402530 - PB1D10 SINE Alu -26 91 1 2 666 849 115 0 2 chr9 10673898 10674024 -113402148 + L1_Mus4 LINE L1 5618 5777 -859 2 666 549 260 47 0 chr9 10674025 10674152 -113402020 + ETnERV2-int LTR ERVK 7070 7202 -204 2 666 1614 262 52 2 chr9 10674521 10674535 -113401637 + Lx5 LINE L1 6593 6606 -444 2 666 5985 101 5 1 chr9 10674535 10675392 -113400780 + L1_Mus3 LINE L1 5772 6631 -7 2 666 1614 262 52 2 chr9 10675392 10675802 -113400370 + Lx5 LINE L1 6607 7038 -12 2 666 405 0 0 0 chr9 10675829 10675874 -113400298 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 666 249 250 47 0 chr9 10676676 10676740 -113399432 - Tigger1 DNA MER2_type -666 1752 1686 2 666 257 303 21 21 chr9 10677619 10677764 -113398408 + L1MA4 LINE L1 5786 5930 -370 2 666 567 29 0 0 chr9 10678208 10678277 -113397895 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 666 920 230 50 5 chr9 10678466 10678667 -113397505 + B3 SINE B2 7 216 0 2 666 1270 287 100 7 chr9 10679046 10679329 -113396843 + Lx9 LINE L1 6821 7143 -501 2 666 4902 45 0 5 chr9 10679329 10679925 -113396247 + L1Md_F2 LINE L1 5990 6582 0 2 666 1270 287 100 7 chr9 10679925 10680209 -113395963 + Lx9 LINE L1 7144 7441 -203 2 666 372 273 10 10 chr9 10680582 10680682 -113395490 + MTE2a LTR MaLR 174 273 -106 2 666 221 230 0 51 chr9 10680691 10680769 -113395403 + CT-rich Low_complexity Low_complexity 3 76 0 2 666 288 221 128 0 chr9 10680770 10680856 -113395316 + MTE2a LTR MaLR 283 379 0 2 666 6831 90 8 6 chr9 10683134 10684081 -113392091 + L1_Mus4 LINE L1 5693 6629 -7 2 666 560 262 30 30 chr9 10684146 10684315 -113391857 + ORR1B2 LTR MaLR 1 169 -198 2 666 240 200 0 0 chr9 10684315 10684400 -113391772 + CT-rich Low_complexity Low_complexity 1 85 0 2 666 820 232 9 104 chr9 10684402 10684565 -113391607 + ORR1B2 LTR MaLR 156 320 -47 2 666 1934 114 13 25 chr9 10684565 10684881 -113391291 + L1_Mus3 LINE L1 6325 6636 -2 2 666 820 232 9 104 chr9 10684881 10684948 -113391224 + ORR1B2 LTR MaLR 321 364 -3 2 666 24 0 0 0 chr9 10685085 10685109 -113391063 + AT_rich Low_complexity Low_complexity 1 24 0 2 666 341 247 137 49 chr9 10686150 10686252 -113389920 - ID_B1 SINE B4 -9 215 105 2 666 2490 7 0 3 chr9 10687422 10687706 -113388466 - L1Md_A LINE L1 0 6582 6300 2 666 3982 13 0 0 chr9 10687706 10688157 -113388015 + L1Md_A LINE L1 5645 6095 -487 2 666 387 291 70 35 chr9 10688753 10688924 -113387248 + MLT1F1 LTR MaLR 175 351 -218 2 666 363 291 97 28 chr9 10690374 10690519 -113385653 + RSINE1 SINE B4 1 155 -10 2 666 256 163 0 0 chr9 10691763 10691806 -113384366 + Lx3C LINE L1 6194 6236 -740 2 666 222 308 31 0 chr9 10692480 10692545 -113383627 - B1F SINE Alu -8 141 75 2 666 652 217 191 0 chr9 10693524 10693713 -113382459 - URR1B DNA MER1_type 0 225 1 2 666 264 375 54 0 chr9 10694214 10694326 -113381846 - B4A SINE B4 -174 118 1 2 666 460 50 0 0 chr9 10694530 10694590 -113381582 - MusHAL1 LINE L1 -701 2011 1952 2 666 10912 156 13 9 chr9 10694591 10696779 -113379393 + Lx LINE L1 3869 6066 -588 2 666 2904 89 5 8 chr9 10696779 10697176 -113378996 - MTA_Mm LTR MaLR 0 396 1 2 666 6867 116 12 15 chr9 10697176 10697741 -113378431 + Lx LINE L1 6067 6629 -25 2 666 813 71 0 0 chr9 10697738 10697837 -113378335 + L1Md_F2 LINE L1 5488 5586 -297 2 666 7815 54 4 2 chr9 10697837 10698831 -113377341 + L1Md_F2 LINE L1 5587 6582 0 2 666 834 160 18 0 chr9 10698863 10699032 -113377140 + Lx2 LINE L1 5998 6169 -828 2 666 343 235 25 133 chr9 10699031 10699133 -113377039 - L1_Mur3 LINE L1 -2531 3349 3266 2 666 1124 14 0 7 chr9 10699133 10699275 -113376897 - L1Md_F2 LINE L1 -8 6574 6434 2 666 343 235 25 133 chr9 10699275 10699368 -113376804 - L1_Mur3 LINE L1 -2615 3265 3175 2 666 1080 81 0 0 chr9 10699368 10699516 -113376656 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 2 666 37654 42 1 4 chr9 10701206 10707437 -113368735 - L1Md_T LINE L1 0 6585 278 2 666 213 39 0 0 chr9 10707567 10707593 -113368579 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 666 474 345 0 29 chr9 10707605 10707775 -113368397 - RSINE1 SINE B4 0 165 1 2 666 25 0 0 0 chr9 10707812 10707837 -113368335 + AT_rich Low_complexity Low_complexity 1 25 0 2 666 7547 199 91 23 chr9 10708424 10710845 -113365327 + Lx4B LINE L1 4309 6873 -127 2 666 27 0 0 0 chr9 10713122 10713149 -113363023 + AT_rich Low_complexity Low_complexity 1 27 0 2 666 1345 121 16 61 chr9 10713166 10713412 -113362760 - Lx5 LINE L1 -1031 6019 5785 2 666 2128 221 48 38 chr9 10713412 10713772 -113362400 + Lx5 LINE L1 6564 6921 -129 2 666 489 272 181 52 chr9 10713772 10714098 -113362074 + RLTR9A LTR ERVK 1 368 0 2 666 2128 221 48 38 chr9 10714098 10714217 -113361955 + Lx5 LINE L1 6922 7048 -2 2 666 248 313 112 84 chr9 10714227 10714370 -113361802 + B3A SINE B2 64 210 -6 2 666 492 341 7 0 chr9 10715635 10715773 -113360399 + RSINE1 SINE B4 4 142 -23 2 666 24 67 0 0 chr9 10716107 10716152 -113360020 + AT_rich Low_complexity Low_complexity 1 45 0 2 666 221 109 22 0 chr9 10716186 10716232 -113359940 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 666 995 115 0 0 chr9 10716232 10716380 -113359792 - B1_Mus1 SINE Alu 0 148 1 2 666 224 291 21 75 chr9 10716891 10716984 -113359188 - L2a LINE L2 -55 3371 3284 2 666 4328 104 45 5 chr9 10717712 10718341 -113357831 - Lx3_Mus LINE L1 -14 6995 6342 2 666 28 61 0 0 chr9 10718517 10718566 -113357606 + AT_rich Low_complexity Low_complexity 1 49 0 2 666 7181 97 10 9 chr9 10719232 10720308 -113355864 - Lx3_Mus LINE L1 -1143 4743 3667 2 666 8244 111 78 5 chr9 10720250 10722412 -113353760 + Lx3_Mus LINE L1 4735 6991 -18 2 666 350 0 44 0 chr9 10722412 10722457 -113353715 + (TTAA)n Simple_repeat Simple_repeat 1 47 0 2 666 488 338 55 74 chr9 10722729 10722985 -113353187 - B4A SINE B4 -16 276 26 2 666 24 32 0 0 chr9 10723015 10723046 -113353126 + AT_rich Low_complexity Low_complexity 1 31 0 2 666 1165 126 6 6 chr9 10723317 10723500 -113352672 + Lx4B LINE L1 5763 5945 -1113 2 666 1458 212 21 24 chr9 10723494 10723822 -113352350 + Lx2B LINE L1 6532 6858 -142 2 666 27 49 0 0 chr9 10723875 10723916 -113352256 + AT_rich Low_complexity Low_complexity 1 41 0 2 666 27 0 0 0 chr9 10723942 10723969 -113352203 + AT_rich Low_complexity Low_complexity 1 27 0 3 666 243 0 0 0 chr9 10723969 10723996 -113352176 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 666 993 105 7 0 chr9 10723996 10724139 -113352033 - B1_Mus1 SINE Alu -4 144 1 3 666 253 150 0 0 chr9 10725504 10725544 -113350628 - B3A SINE B2 -155 43 4 3 666 25 0 0 0 chr9 10727062 10727087 -113349085 + AT_rich Low_complexity Low_complexity 1 25 0 3 666 231 263 25 33 chr9 10727906 10728028 -113348144 + GA-rich Low_complexity Low_complexity 4 124 0 3 666 393 368 86 81 chr9 10728449 10729052 -113347120 - MTE-int LTR MaLR -896 684 79 3 666 63 91 0 0 chr9 10729060 10729235 -113346937 + AT_rich Low_complexity Low_complexity 1 175 0 3 666 244 377 72 7 chr9 10730287 10730426 -113345746 - RSINE1 SINE B4 -6 159 12 3 666 685 260 66 0 chr9 10730658 10730854 -113345318 + B3 SINE B2 3 211 -5 3 666 21 0 0 0 chr9 10730854 10730875 -113345297 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 555 264 59 50 chr9 10731041 10731260 -113344912 - ID_B1 SINE B4 -2 222 2 3 666 203 298 18 0 chr9 10731947 10732004 -113344168 + L3 LINE CR1 4094 4151 -338 3 666 623 256 68 18 chr9 10732011 10732174 -113343998 - MTD LTR MaLR -241 178 8 3 666 309 312 91 17 chr9 10732285 10732461 -113343711 + L1MA5 LINE L1 5989 6177 -123 3 666 538 78 9 38 chr9 10733223 10733329 -113342843 + (TA)n Simple_repeat Simple_repeat 1 103 0 3 666 227 195 0 0 chr9 10733524 10733565 -113342607 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 3 666 200 235 0 14 chr9 10733674 10733743 -113342429 + CT-rich Low_complexity Low_complexity 1 68 0 3 666 417 315 78 68 chr9 10733779 10733970 -113342202 - B3A SINE B2 -2 193 1 3 666 25 90 0 0 chr9 10734091 10734158 -113342014 + AT_rich Low_complexity Low_complexity 1 67 0 3 666 200 155 27 27 chr9 10734293 10734366 -113341806 + (TATAA)n Simple_repeat Simple_repeat 3 75 0 3 666 214 123 35 0 chr9 10736861 10736918 -113339254 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 666 256 102 20 20 chr9 10737027 10737077 -113339095 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 666 412 304 56 0 chr9 10738136 10738261 -113337911 - B1F2 SINE Alu 0 149 18 3 666 26405 130 21 60 chr9 10738595 10739942 -113336230 + L1_Mus2 LINE L1 352 1708 -4858 3 666 1902 123 40 19 chr9 10739942 10740266 -113335906 + IAPEY_LTR LTR ERVK 55 385 0 3 666 26405 130 21 60 chr9 10740266 10745083 -113331089 + L1_Mus2 LINE L1 1709 6564 -2 3 666 1164 246 40 51 chr9 10745177 10745550 -113330622 - L1_Rod LINE L1 -1681 4166 3798 3 666 1086 107 6 0 chr9 10745598 10745757 -113330415 + MTB LTR MaLR 182 341 -59 3 666 239 268 145 12 chr9 10745989 10746072 -113330100 + B1F SINE Alu 1 94 -55 3 666 566 306 35 5 chr9 10746968 10747168 -113329004 - B3 SINE B2 -10 206 1 3 666 26 0 0 0 chr9 10747198 10747224 -113328948 + AT_rich Low_complexity Low_complexity 1 26 0 3 666 186 128 0 0 chr9 10747727 10747766 -113328406 + (T)n Simple_repeat Simple_repeat 1 39 0 3 667 554 293 18 18 chr9 10748607 10748777 -113327395 + B3A SINE B2 1 170 -28 3 667 21 0 0 0 chr9 10749073 10749094 -113327078 + AT_rich Low_complexity Low_complexity 1 21 0 3 667 248 406 26 22 chr9 10749315 10749544 -113326628 - MLT1J LTR MaLR -261 251 22 3 667 365 373 114 10 chr9 10749766 10750064 -113326108 - L2 LINE L2 -1105 2314 1986 3 667 456 51 0 0 chr9 10750455 10750514 -113325658 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3 667 980 241 60 23 chr9 10750525 10750920 -113325252 + ORR1C2 LTR MaLR 44 382 -2 3 667 216 204 20 0 chr9 10750920 10750969 -113325203 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 667 294 297 144 51 chr9 10750972 10751327 -113324845 - L1MA6 LINE L1 -134 6166 5779 3 667 248 382 65 0 chr9 10751615 10751738 -113324434 + MER5A1 DNA MER1_type 36 166 0 3 667 360 286 27 0 chr9 10752532 10752644 -113323528 - ID_B1 SINE B4 -1 223 109 3 667 991 96 14 0 chr9 10752713 10752859 -113323313 - B1_Mus1 SINE Alu 0 148 1 3 667 26 50 0 0 chr9 10754617 10754657 -113321515 + AT_rich Low_complexity Low_complexity 1 40 0 3 667 29 28 0 0 chr9 10756358 10756394 -113319778 + AT_rich Low_complexity Low_complexity 1 36 0 3 667 577 25 12 0 chr9 10756933 10757014 -113319158 + L1Md_F2 LINE L1 6489 6570 -12 3 667 8248 62 1 0 chr9 10758962 10759998 -113316174 - L1Md_F2 LINE L1 -74 5809 4773 3 667 6143 52 5 1 chr9 10759998 10760768 -113315404 + L1Md_F2 LINE L1 5810 6582 0 3 667 768 120 83 0 chr9 10761403 10761547 -113314625 + B2_Mm2 SINE B2 2 169 -47 3 667 255 125 0 0 chr9 10762704 10762744 -113313428 + (T)n Simple_repeat Simple_repeat 1 40 0 3 667 261 83 0 0 chr9 10763111 10763147 -113313025 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 667 476 0 0 33 chr9 10763837 10763898 -113312274 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 3 667 562 314 59 0 chr9 10763900 10764053 -113312119 - RSINE1 SINE B4 -2 163 2 3 667 364 204 85 42 chr9 10764503 10764621 -113311551 - RLTR23 LTR ERV1 -1 429 307 3 667 615 282 36 12 chr9 10765805 10765970 -113310202 + Lx8 LINE L1 7143 7311 -162 3 667 645 77 0 152 chr9 10767964 10768122 -113308050 - L1_Mus1 LINE L1 0 6567 6451 3 667 2762 56 3 0 chr9 10768122 10768460 -113307712 + L1_Mus1 LINE L1 6098 6436 -131 3 667 419 280 11 39 chr9 10770546 10770670 -113305502 - RSINE1 SINE B4 -42 123 2 3 667 287 305 37 19 chr9 10771071 10771178 -113304994 - PB1D10 SINE Alu -8 109 1 3 667 22 0 0 0 chr9 10771292 10771314 -113304858 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 202 302 0 0 chr9 10772301 10772364 -113303808 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 3 667 514 179 0 15 chr9 10772376 10772512 -113303660 + (TA)n Simple_repeat Simple_repeat 2 135 0 3 667 249 279 0 0 chr9 10772523 10772584 -113303588 + (TATG)n Simple_repeat Simple_repeat 2 62 0 3 667 322 323 141 15 chr9 10773072 10773270 -113302902 - ID_B1 SINE B4 0 224 2 3 667 32 26 0 0 chr9 10774179 10774218 -113301954 + AT_rich Low_complexity Low_complexity 1 39 0 3 667 315 250 0 0 chr9 10775125 10775185 -113300987 + RSINE1 SINE B4 72 131 -34 3 667 211 304 43 0 chr9 10775913 10775982 -113300190 - B4A SINE B4 -137 155 84 3 667 500 273 66 16 chr9 10776915 10777153 -113299019 - L1M2 LINE L1 -3229 2911 2657 3 667 473 302 163 23 chr9 10777271 10777871 -113298301 + L1M2 LINE L1 3623 4306 -1837 3 667 261 0 0 0 chr9 10778317 10778346 -113297826 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 667 251 219 0 14 chr9 10778461 10778535 -113297637 + (CAAA)n Simple_repeat Simple_repeat 4 76 0 3 667 772 134 13 0 chr9 10778926 10779083 -113297089 + (CA)n Simple_repeat Simple_repeat 2 160 0 3 667 1201 61 66 11 chr9 10779861 10780044 -113296128 - L1Md_F3 LINE L1 -10 6574 6382 3 667 2542 89 64 13 chr9 10780965 10781340 -113294832 + L1_Mus2 LINE L1 6167 6560 -6 3 667 1050 319 88 19 chr9 10781394 10781861 -113294311 + Lx8 LINE L1 6232 6730 -743 3 667 1512 299 122 2 chr9 10781874 10782466 -113293706 + Lx8 LINE L1 6811 7473 0 3 667 24 32 0 0 chr9 10782909 10782940 -113293232 + AT_rich Low_complexity Low_complexity 1 31 0 3 667 305 338 40 46 chr9 10783912 10784064 -113292108 + B4 SINE B4 5 155 -137 3 667 186 43 0 0 chr9 10784099 10784122 -113292050 + (CAAAAA)n Simple_repeat Simple_repeat 5 27 0 3 667 233 315 44 22 chr9 10784184 10784275 -113291897 - B3A SINE B2 -96 102 10 3 667 261 0 0 0 chr9 10784412 10784441 -113291731 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 667 1233 154 49 9 chr9 10786118 10786341 -113289831 - Lx2 LINE L1 -2 6995 6764 3 667 372 373 14 54 chr9 10787154 10787375 -113288797 - L2 LINE L2 -828 2591 2380 3 667 324 64 0 0 chr9 10787437 10787484 -113288688 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 667 324 366 37 7 chr9 10787784 10787919 -113288253 + RSINE1 SINE B4 25 163 -2 3 667 381 22 0 0 chr9 10787922 10787968 -113288204 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 667 405 35 35 0 chr9 10788345 10788402 -113287770 - B1_Mus2 SINE Alu 0 147 89 3 667 266 250 32 21 chr9 10788402 10788439 -113287733 - ID_B1 SINE B4 0 224 130 3 667 255 170 0 0 chr9 10789076 10789123 -113287049 + T-rich Low_complexity Low_complexity 1 47 0 3 667 212 184 0 0 chr9 10789391 10789429 -113286743 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 667 336 252 103 37 chr9 10789837 10790051 -113286121 - L1M2 LINE L1 -4165 2684 2457 3 667 353 308 53 27 chr9 10791004 10791154 -113285018 + B3 SINE B2 61 214 -2 3 667 5451 230 67 42 chr9 10791583 10792977 -113283195 + Lx5 LINE L1 5622 7050 0 3 667 7416 83 19 2 chr9 10793190 10794849 -113281323 + L1_Mus1 LINE L1 4912 6567 0 3 667 184 295 135 11 chr9 10796144 10796233 -113279939 - MIRm SINE MIR -18 258 159 3 667 21 36 0 0 chr9 10796624 10796652 -113279520 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 531 45 0 0 chr9 10796867 10796933 -113279239 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 667 345 309 57 32 chr9 10797741 10797898 -113278274 - RSINE1 SINE B4 0 165 5 3 667 1274 152 38 0 chr9 10798822 10799059 -113277113 + Lx2 LINE L1 6752 6997 0 3 667 602 116 24 16 chr9 10799817 10799940 -113276232 + L1_Mus4 LINE L1 6507 6630 -6 3 667 32 26 0 0 chr9 10801498 10801537 -113274635 + AT_rich Low_complexity Low_complexity 1 39 0 3 667 3004 62 3 0 chr9 10801654 10802039 -113274133 - L1Md_F2 LINE L1 -254 5629 5244 3 667 7342 62 14 18 chr9 10802039 10803019 -113273153 + L1Md_F2 LINE L1 5605 6580 -2 3 667 2424 189 48 2 chr9 10803171 10803675 -113272497 - L1_Mur1 LINE L1 -211 5675 5149 3 667 6404 128 24 5 chr9 10803675 10804651 -113271521 + Lx LINE L1 5636 6629 -25 4 667 34 0 0 0 chr9 10804651 10804685 -113271487 + AT_rich Low_complexity Low_complexity 1 34 0 4 667 276 100 0 0 chr9 10804708 10804748 -113271424 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 667 21 0 0 0 chr9 10804767 10804788 -113271384 + AT_rich Low_complexity Low_complexity 1 21 0 4 667 231 102 33 17 chr9 10806407 10806443 -113269729 + T-rich Low_complexity Low_complexity 28 63 0 4 667 1151 89 0 0 chr9 10806443 10806589 -113269583 - B1_Mus1 SINE Alu 0 148 3 4 667 231 102 33 17 chr9 10806589 10806612 -113269560 + T-rich Low_complexity Low_complexity 4 27 0 4 667 4134 126 18 18 chr9 10806614 10807283 -113268889 - Lx3A LINE L1 -5 6976 6308 4 667 1020 120 12 0 chr9 10807284 10807451 -113268721 + L1_Mur1 LINE L1 3581 3749 -2137 4 667 2107 127 6 22 chr9 10807445 10807800 -113268372 - Lx3A LINE L1 -661 6320 5972 4 667 647 114 0 37 chr9 10807805 10807914 -113268258 + L1_Mur1 LINE L1 4173 4277 -1609 4 667 286 314 107 88 chr9 10811260 10811623 -113264549 + Tigger6a DNA MER2_type 62 431 -652 4 667 212 263 167 26 chr9 10811746 10811824 -113264348 + PB1D7 SINE Alu 31 119 -1 4 667 218 160 20 0 chr9 10812123 10812173 -113263999 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 667 225 0 0 0 chr9 10812920 10812945 -113263227 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 4 667 4055 105 70 10 chr9 10813009 10813680 -113262492 - Lx3_Mus LINE L1 0 7009 6299 4 667 388 340 43 0 chr9 10816119 10816304 -113259868 - B3A SINE B2 -2 196 4 4 667 328 265 112 0 chr9 10816525 10816623 -113259549 + PB1D7 SINE Alu 3 111 -9 4 667 209 62 60 40 chr9 10817073 10817123 -113259049 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 4 667 471 321 77 68 chr9 10817340 10817651 -113258521 + RLTR18 LTR ERVK 5 318 -298 4 667 730 310 75 15 chr9 10817723 10817988 -113258184 + RLTR18B LTR ERVK 231 511 -1 4 667 49 18 0 0 chr9 10818515 10818571 -113257601 + AT_rich Low_complexity Low_complexity 1 56 0 4 667 207 0 0 0 chr9 10823582 10823605 -113252567 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 667 572 324 7 31 chr9 10823605 10823898 -113252274 - L1M2 LINE L1 -523 5774 5489 4 667 222 150 0 0 chr9 10823915 10823955 -113252217 + (T)n Simple_repeat Simple_repeat 1 40 0 4 667 368 349 132 36 chr9 10824050 10824490 -113251682 - Lx8 LINE L1 -69 7404 6923 4 667 210 116 47 0 chr9 10825149 10825192 -113250980 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 667 391 179 0 0 chr9 10825265 10825349 -113250823 + Lx3A LINE L1 6892 6975 -6 4 667 26 50 0 0 chr9 10825353 10825393 -113250779 + AT_rich Low_complexity Low_complexity 1 40 0 4 667 353 337 83 25 chr9 10825666 10825870 -113250302 + LTR84b LTR ERVL 70 285 -476 4 667 310 309 43 0 chr9 10826599 10826693 -113249479 + B2_Mm2 SINE B2 4 101 -94 4 667 2731 42 0 0 chr9 10827007 10827340 -113248832 + L1Md_T LINE L1 6250 6582 0 4 667 25 51 0 0 chr9 10827345 10827384 -113248788 + AT_rich Low_complexity Low_complexity 1 39 0 4 667 430 307 77 24 chr9 10827505 10827675 -113248497 + B3A SINE B2 5 183 -15 4 667 396 255 11 11 chr9 10828460 10828555 -113247617 + B3 SINE B2 8 102 -114 4 667 445 323 89 0 chr9 10828667 10828825 -113247347 + B3A SINE B2 2 173 -25 4 667 4205 36 0 2 chr9 10829624 10830123 -113246049 + L1Md_F2 LINE L1 6082 6579 -3 4 667 896 172 6 0 chr9 10830518 10830675 -113245497 + URR1A DNA MER1_type 69 226 0 4 667 190 375 9 55 chr9 10830778 10830888 -113245284 + L2c LINE L2 3246 3350 -37 4 667 348 328 67 15 chr9 10831474 10831669 -113244503 + B3 SINE B2 1 205 -11 4 667 220 211 16 47 chr9 10831880 10832009 -113244163 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 4 667 2971 62 0 31 chr9 10832011 10832428 -113243744 + BGLII LTR ERVK 18 421 0 4 667 384 22 0 0 chr9 10832788 10832833 -113243339 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 4 667 1223 80 11 0 chr9 10832833 10833009 -113243163 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 667 591 53 0 0 chr9 10833009 10833084 -113243088 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 4 667 402 21 0 0 chr9 10833084 10833130 -113243042 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 667 621 171 0 58 chr9 10833130 10833285 -113242887 - Lx2B LINE L1 -10 6990 6845 4 667 3304 188 40 6 chr9 10833298 10833931 -113242241 - Lx2B LINE L1 -274 6726 6073 4 667 618 72 12 0 chr9 10833931 10834014 -113242158 + B2_Mm2 SINE B2 8 91 -104 4 667 8314 128 25 6 chr9 10834882 10837183 -113238989 - Lx3B LINE L1 0 6973 4623 4 667 6601 74 39 0 chr9 10840424 10841326 -113234846 + L1_Mus3 LINE L1 5702 6638 0 4 667 25 0 0 0 chr9 10841435 10841460 -113234712 + AT_rich Low_complexity Low_complexity 1 25 0 4 667 1316 266 98 91 chr9 10844037 10844617 -113231555 + RMER20B LTR ERVK 21 604 -23 4 667 302 121 15 0 chr9 10845123 10845189 -113230983 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 667 18063 56 0 0 chr9 10845257 10847607 -113228565 - L1Md_F2 LINE L1 -650 5932 3583 4 667 1181 68 0 0 chr9 10847879 10848026 -113228146 + B1_Mus2 SINE Alu 1 147 0 4 667 273 107 13 51 chr9 10848026 10848105 -113228067 + A-rich Low_complexity Low_complexity 3 78 0 4 667 535 111 122 0 chr9 10848109 10848199 -113227973 + Lx9 LINE L1 6989 7089 -555 4 667 220 0 56 28 chr9 10848199 10848235 -113227937 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 4 667 275 156 203 0 chr9 10848235 10848299 -113227873 + Lx9 LINE L1 7083 7159 -485 4 667 22 0 0 0 chr9 10850142 10850164 -113226008 + AT_rich Low_complexity Low_complexity 1 22 0 4 667 24 32 0 0 chr9 10850561 10850592 -113225580 + AT_rich Low_complexity Low_complexity 1 31 0 4 667 1161 221 13 4 chr9 10850598 10850830 -113225342 - Lx4B LINE L1 -3 7055 6822 4 667 25 51 0 0 chr9 10851629 10851668 -113224504 + AT_rich Low_complexity Low_complexity 1 39 0 4 667 28 71 0 0 chr9 10851798 10851854 -113224318 + AT_rich Low_complexity Low_complexity 1 56 0 4 667 327 324 49 42 chr9 10852376 10852518 -113223654 - B1F SINE Alu -6 143 1 4 667 384 38 49 25 chr9 10852587 10852668 -113223504 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 4 667 1186 47 0 13 chr9 10852671 10852821 -113223351 - B1_Mus1 SINE Alu 0 148 1 4 667 345 75 0 0 chr9 10853902 10853955 -113222217 + (TTTTG)n Simple_repeat Simple_repeat 4 56 0 4 667 419 274 19 64 chr9 10853958 10854114 -113222058 - B1_Mur1 SINE Alu 0 149 1 4 667 269 316 173 13 chr9 10857174 10857411 -113218761 - B4A SINE B4 -13 279 5 4 667 1944 155 66 0 chr9 10857619 10857967 -113218205 - L1_Mur2 LINE L1 -1044 4833 4463 4 667 1819 201 8 20 chr9 10857967 10858318 -113217854 + Lx4A LINE L1 6712 7058 0 4 667 21 0 0 0 chr9 10858331 10858352 -113217820 + AT_rich Low_complexity Low_complexity 1 21 0 4 667 300 327 97 0 chr9 10860595 10860708 -113215464 + RSINE1 SINE B4 11 134 -31 4 667 756 311 110 54 chr9 10860890 10861318 -113214854 - RMER5 LTR ERV1 -8 526 75 4 667 415 346 30 80 chr9 10862309 10862510 -113213662 - B3A SINE B2 -7 191 1 4 667 227 313 151 35 chr9 10862993 10863165 -113213007 - LTR16B2 LTR ERVL -7 455 264 4 667 24 0 0 0 chr9 10863254 10863278 -113212894 + AT_rich Low_complexity Low_complexity 1 24 0 4 667 22 0 0 0 chr9 10863362 10863384 -113212788 + AT_rich Low_complexity Low_complexity 1 22 0 4 667 4645 77 3 19 chr9 10863504 10864143 -113212029 + L1Md_F2 LINE L1 5941 6569 -13 4 667 926 338 35 30 chr9 10864443 10864809 -113211363 - MTEa LTR MaLR -9 370 3 4 667 25 31 0 0 chr9 10865493 10865525 -113210647 + AT_rich Low_complexity Low_complexity 1 32 0 4 667 7409 104 6 17 chr9 10866038 10866913 -113209259 - Lx LINE L1 -7 6647 5782 4 667 209 57 0 28 chr9 10866913 10866949 -113209223 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 667 7409 131 9 19 chr9 10866949 10867413 -113208759 - Lx LINE L1 -102 5781 5313 4 667 25 0 0 0 chr9 10868239 10868264 -113207908 + AT_rich Low_complexity Low_complexity 1 25 0 4 667 532 312 100 71 chr9 10868369 10868854 -113207318 + MT2A LTR ERVL 1 502 -31 4 667 6510 3 0 0 chr9 10868854 10869575 -113206597 - L1Md_A LINE L1 0 6582 5862 4 667 532 312 100 71 chr9 10869575 10869607 -113206565 + MT2A LTR ERVL 503 533 0 4 667 204 152 0 21 chr9 10869814 10869861 -113206311 + (TTG)n Simple_repeat Simple_repeat 3 48 0 4 667 375 154 0 0 chr9 10872076 10872141 -113204031 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 667 37 62 0 0 chr9 10872197 10872262 -113203910 + AT_rich Low_complexity Low_complexity 1 65 0 4 667 187 206 40 30 chr9 10873029 10873129 -113203043 + GA-rich Low_complexity Low_complexity 1 101 0 4 667 227 114 0 22 chr9 10874438 10874483 -113201689 + (CCA)n Simple_repeat Simple_repeat 2 45 0 4 667 380 383 8 8 chr9 10874941 10875062 -113201110 + RSINE1 SINE B4 28 148 -17 4 667 312 287 129 0 chr9 10876709 10876810 -113199362 - MTEb LTR MaLR -210 169 56 4 667 223 125 0 40 chr9 10876846 10876896 -113199276 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 4 667 731 304 54 22 chr9 10878181 10878457 -113197715 + Lx8 LINE L1 7039 7323 -150 4 668 530 340 0 70 chr9 10879338 10879566 -113196606 - B3A SINE B2 -2 214 3 4 668 214 364 0 15 chr9 10879586 10879653 -113196519 - ID4 SINE ID -2 81 16 4 668 589 280 171 31 chr9 10879863 10880184 -113195988 + RLTR9A LTR ERVK 3 368 0 4 668 21 82 0 0 chr9 10880282 10880331 -113195841 + AT_rich Low_complexity Low_complexity 1 49 0 4 668 387 0 0 0 chr9 10880334 10880377 -113195795 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 668 529 229 60 15 chr9 10880385 10880518 -113195654 - RSINE1 SINE B4 -21 144 6 4 668 4497 39 0 0 chr9 10881125 10881659 -113194513 + L1Md_F2 LINE L1 6040 6573 -9 5 668 375 60 0 0 chr9 10882252 10882302 -113193870 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 668 23 54 0 0 chr9 10883400 10883437 -113192735 + AT_rich Low_complexity Low_complexity 1 37 0 5 668 28 79 0 0 chr9 10884006 10884069 -113192103 + AT_rich Low_complexity Low_complexity 1 63 0 5 668 261 0 0 0 chr9 10885508 10885537 -113190635 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 5 668 249 231 65 71 chr9 10885797 10885951 -113190221 + Lx9 LINE L1 7492 7644 0 5 668 1113 58 0 0 chr9 10886052 10886189 -113189983 - B1_Mm SINE Alu -10 137 1 5 668 297 319 70 17 chr9 10886694 10886809 -113189363 - B3A SINE B2 -9 207 87 5 668 21 0 0 0 chr9 10887907 10887928 -113188244 + AT_rich Low_complexity Low_complexity 1 21 0 5 668 24 32 0 0 chr9 10888013 10888044 -113188128 + AT_rich Low_complexity Low_complexity 1 31 0 5 668 463 358 7 0 chr9 10889319 10889470 -113186702 - B4A SINE B4 -19 273 122 5 668 424 331 6 0 chr9 10890145 10890317 -113185855 + CT-rich Low_complexity Low_complexity 2 174 0 5 668 1879 206 55 5 chr9 10891129 10891530 -113184642 + MTC LTR MaLR 1 421 0 5 668 225 0 0 0 chr9 10893080 10893105 -113183067 + (T)n Simple_repeat Simple_repeat 1 25 0 5 668 23 0 0 0 chr9 10895203 10895226 -113180946 + AT_rich Low_complexity Low_complexity 1 23 0 5 668 3830 103 38 10 chr9 10895654 10896230 -113179942 + L1_Mus4 LINE L1 6045 6636 0 5 668 372 383 60 20 chr9 10897081 10897281 -113178891 - ID_B1 SINE B4 -1 223 16 5 668 211 146 24 0 chr9 10899609 10899650 -113176522 + A-rich Low_complexity Low_complexity 2 43 0 5 668 523 198 28 0 chr9 10900569 10900675 -113175497 + L1_Mur3 LINE L1 4050 4158 -1722 5 668 275 0 0 28 chr9 10904273 10904309 -113171863 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 668 21 0 0 0 chr9 10904833 10904854 -113171318 + GC_rich Low_complexity Low_complexity 1 21 0 5 668 324 94 0 0 chr9 10905434 10905487 -113170685 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 5 668 301 304 71 21 chr9 10906854 10906995 -113169177 + B1F SINE Alu 1 148 -1 5 668 750 78 0 0 chr9 10908785 10908887 -113167285 + (GGA)n Simple_repeat Simple_repeat 3 104 0 5 668 509 265 30 15 chr9 10909049 10909183 -113166989 - B1F1 SINE Alu -5 144 9 5 668 237 309 71 0 chr9 10909108 10909192 -113166980 - B4A SINE B4 -118 174 85 5 668 290 115 0 19 chr9 10909669 10909722 -113166450 + (TCCC)n Simple_repeat Simple_repeat 3 54 0 5 668 391 313 7 30 chr9 10910352 10910487 -113165685 - B1F SINE Alu -9 140 9 5 668 7489 79 3 3 chr9 10912341 10913946 -113162226 - L1Md_F2 LINE L1 -3 6579 4973 5 668 575 278 110 0 chr9 10914867 10915058 -113161114 - B3 SINE B2 0 216 5 5 668 6006 235 23 16 chr9 10915106 10916589 -113159583 - Lx5 LINE L1 -6 7044 5543 5 668 869 223 0 34 chr9 10916588 10916797 -113159375 - Lx5 LINE L1 -934 4943 4742 5 668 2746 88 40 5 chr9 10916824 10917222 -113158950 - L1Md_F2 LINE L1 0 6582 6171 5 668 30864 87 14 7 chr9 10917222 10918221 -113157951 - L1Md_F LINE L1 -211 5672 4632 5 668 234 0 0 0 chr9 10918221 10918247 -113157925 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 668 30864 92 18 9 chr9 10918247 10922500 -113153672 - L1Md_F LINE L1 -1252 4631 374 5 668 5811 194 56 80 chr9 10922518 10924190 -113151982 - Lx5 LINE L1 -1137 4740 3110 5 668 964 136 0 26 chr9 10924414 10924455 -113151717 + B1_Mm SINE Alu 1 41 -106 5 668 3037 72 0 2 chr9 10924455 10924857 -113151315 + L1Md_F2 LINE L1 6182 6582 0 5 668 964 136 0 26 chr9 10924857 10924966 -113151206 + B1_Mm SINE Alu 42 147 0 5 668 2810 172 123 2 chr9 10925419 10926043 -113150129 + L1_Mur3 LINE L1 5162 5861 -19 5 668 4814 175 58 43 chr9 10926042 10927067 -113149105 + Lx4A LINE L1 6019 7058 0 5 668 21 82 0 0 chr9 10927072 10927121 -113149051 + AT_rich Low_complexity Low_complexity 1 49 0 5 668 1458 132 25 25 chr9 10927762 10928041 -113148131 - L1_Mm LINE L1 -482 5401 5123 5 668 1829 208 22 22 chr9 10929442 10929845 -113146327 - MTC LTR MaLR -1 420 18 5 668 618 143 12 104 chr9 10929867 10930031 -113146141 + Lx3C LINE L1 6823 6971 -5 5 668 35 0 0 0 chr9 10930155 10930190 -113145982 + AT_rich Low_complexity Low_complexity 1 35 0 5 668 1597 208 43 43 chr9 10930249 10930682 -113145490 - Lx7 LINE L1 0 7696 7263 5 668 6969 92 38 8 chr9 10930682 10931675 -113144497 - RLTR13D5 LTR ERVK 0 1023 1 5 668 6948 82 43 0 chr9 10932203 10933290 -113142882 - L1_Mus2 LINE L1 0 6566 5433 5 668 3456 149 27 69 chr9 10933268 10934606 -113141566 - L1Md_F LINE L1 -2265 1552 258 5 668 459 354 133 28 chr9 10934764 10935124 -113141048 + MLT2B1 LTR ERVL 108 505 -15 5 668 382 276 14 29 chr9 10936179 10936317 -113139855 + GA-rich Low_complexity Low_complexity 3 138 0 5 668 337 286 0 0 chr9 10937109 10937242 -113138930 + (TA)n Simple_repeat Simple_repeat 2 134 0 5 668 386 329 16 21 chr9 10937320 10937562 -113138610 - L1MD LINE L1 -1955 4191 3951 5 668 180 0 0 0 chr9 10937575 10937595 -113138577 + (T)n Simple_repeat Simple_repeat 1 20 0 5 668 1217 41 0 0 chr9 10937595 10937741 -113138431 - B1_Mm SINE Alu 0 147 2 5 668 22 88 0 0 chr9 10938217 10938274 -113137898 + AT_rich Low_complexity Low_complexity 1 57 0 5 668 25 31 0 0 chr9 10938386 10938418 -113137754 + AT_rich Low_complexity Low_complexity 1 32 0 5 668 437 316 89 37 chr9 10938602 10939174 -113136998 - L1MD LINE L1 -3046 3100 2499 5 668 441 0 0 0 chr9 10939177 10939226 -113136946 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 5 668 376 388 37 0 chr9 10939226 10939414 -113136758 - B3 SINE B2 -14 202 8 5 668 899 78 78 0 chr9 10940121 10940249 -113135923 + B1_Mus1 SINE Alu 2 139 -9 5 668 279 0 0 0 chr9 10940249 10940280 -113135892 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 668 186 43 0 0 chr9 10940323 10940346 -113135826 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 5 668 2017 114 3 0 chr9 10940453 10940750 -113135422 - L1_Mus3 LINE L1 -713 5925 5628 5 668 4391 107 57 16 chr9 10940750 10941452 -113134720 + L1_Mus3 LINE L1 5908 6638 0 5 668 441 0 0 0 chr9 10941708 10941757 -113134415 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 668 240 86 0 0 chr9 10942060 10942095 -113134077 + (TGG)n Simple_repeat Simple_repeat 1 35 0 5 668 378 0 0 0 chr9 10942095 10942137 -113134035 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 668 420 20 0 0 chr9 10942358 10942407 -113133765 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 5 668 229 234 12 47 chr9 10942475 10942560 -113133612 + GA-rich Low_complexity Low_complexity 2 83 0 5 668 1199 152 95 248 chr9 10942688 10943171 -113133001 - RLTR9E LTR ERVK 0 409 1 5 668 814 277 132 35 chr9 10943395 10943795 -113132377 - Lx9 LINE L1 -7 7637 7199 5 668 1069 151 11 5 chr9 10944021 10944208 -113131964 + B2_Mm2 SINE B2 2 189 -6 5 668 11581 106 9 69 chr9 10944208 10945941 -113130231 + MusHAL1 LINE L1 311 1922 -790 5 668 2538 104 3 13 chr9 10945941 10946321 -113129851 - L1_Mus2 LINE L1 0 6566 6191 5 668 11581 106 9 69 chr9 10946321 10946658 -113129514 + MusHAL1 LINE L1 1923 2257 -455 5 668 12986 163 7 29 chr9 10946656 10946939 -113129233 + L1_Mur1 LINE L1 2449 2731 -3155 5 668 2900 108 12 0 chr9 10946939 10947355 -113128817 - BGLII LTR ERVK 0 421 1 5 668 12986 163 7 29 chr9 10947355 10947807 -113128365 + L1_Mur1 LINE L1 2732 3185 -2701 5 668 297 0 0 0 chr9 10947807 10947840 -113128332 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 5 668 12986 163 7 29 chr9 10947840 10949704 -113126468 + L1_Mur1 LINE L1 3186 4994 -892 5 668 2125 112 22 13 chr9 10949699 10950016 -113126156 + Lx LINE L1 6206 6525 -129 5 668 650 161 0 8 chr9 10950023 10950148 -113126024 + L1_Mur1 LINE L1 5160 5283 -603 5 668 1473 219 24 39 chr9 10950134 10950548 -113125624 + Lx3C LINE L1 6008 6415 -561 5 668 405 54 0 0 chr9 10950738 10950794 -113125378 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 668 668 255 43 18 chr9 10951316 10951592 -113124580 - Lx9 LINE L1 -48 7596 7314 5 668 247 60 20 0 chr9 10952114 10952164 -113124008 - L1Md_F2 LINE L1 -3 6579 6529 5 668 996 318 86 45 chr9 10952171 10952822 -113123350 + MLT1F-int LTR MaLR 225 902 -587 5 668 330 26 0 0 chr9 10952873 10952912 -113123260 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 5 668 336 48 0 0 chr9 10952951 10952993 -113123179 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 5 668 330 337 0 0 chr9 10953869 10953958 -113122214 + RSINE1 SINE B4 3 91 -74 5 668 431 224 58 22 chr9 10954274 10954411 -113121761 - RMER1B Other Other 0 1066 925 5 668 1660 246 8 3 chr9 10954514 10954872 -113121300 + Lx6 LINE L1 6170 6529 -931 5 668 2808 268 42 8 chr9 10954866 10955585 -113120587 + Lx6 LINE L1 6710 7452 -8 5 668 2814 158 30 0 chr9 10955701 10956196 -113119976 - L1_Mur2 LINE L1 -1420 4457 3948 5 668 6092 150 32 26 chr9 10956203 10957725 -113118447 + Lx LINE L1 5108 6651 -3 5 668 5359 135 9 1 chr9 10957727 10959214 -113116958 + L1VL4 LINE L1 35 1534 -2025 5 668 234 0 0 0 chr9 10959214 10959240 -113116932 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 668 12165 189 26 82 chr9 10959241 10961431 -113114741 + L1_Mus4 LINE L1 3057 5262 -615 5 668 4820 105 1 24 chr9 10961431 10962152 -113114020 - L1Md_F2 LINE L1 -13 6569 5865 5 668 12165 147 16 32 chr9 10962152 10963692 -113112480 + L1_Mus4 LINE L1 5263 6629 -7 5 668 403 237 77 96 chr9 10963704 10963861 -113112311 - L1_Mur3 LINE L1 -1307 4833 4691 5 668 1210 78 0 16 chr9 10963950 10964132 -113112040 + (TTTTC)n Simple_repeat Simple_repeat 2 180 0 5 668 35376 47 0 3 chr9 10964172 10969642 -113106530 + L1Md_T LINE L1 41 5589 -297 5 668 8469 31 0 0 chr9 10969642 10970638 -113105534 + L1Md_T LINE L1 5590 6585 0 5 668 250 286 71 0 chr9 10970706 10970776 -113105396 + MTE2b LTR MaLR 1 75 -304 5 668 591 333 0 38 chr9 10970790 10970974 -113105198 + MTE2b LTR MaLR 59 235 -144 5 668 1231 199 94 34 chr9 10970982 10971279 -113104893 - RLTR46 LTR ERVK -5 315 1 5 668 464 263 112 8 chr9 10971280 10971414 -113104758 + MTE2b LTR MaLR 232 379 0 5 668 204 40 0 0 chr9 10971432 10971457 -113104715 + (A)n Simple_repeat Simple_repeat 1 25 0 5 668 779 284 15 4 chr9 10971465 10971667 -113104505 + Lx6 LINE L1 6152 6368 -1328 5 668 2230 202 35 0 chr9 10971729 10972248 -113103924 - L1_Mur3 LINE L1 -1251 4629 4093 5 668 33137 89 17 7 chr9 10972245 10978514 -113097658 - L1Md_F2 LINE L1 0 6582 273 5 668 403 174 0 0 chr9 10978519 10978588 -113097584 - L1_Mur3 LINE L1 -1772 4108 4040 5 668 296 0 0 49 chr9 10978660 10978701 -113097471 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 5 668 429 346 62 37 chr9 10979298 10979460 -113096712 + B3A SINE B2 3 168 -30 6 668 315 104 0 0 chr9 10979469 10979517 -113096655 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 668 2089 137 6 3 chr9 10979704 10980034 -113096138 + Lx LINE L1 6318 6648 -6 6 668 35 41 0 0 chr9 10980212 10980261 -113095911 + AT_rich Low_complexity Low_complexity 1 49 0 6 668 33 25 0 0 chr9 10980872 10980912 -113095260 + AT_rich Low_complexity Low_complexity 1 40 0 6 668 972 123 0 0 chr9 10981982 10982120 -113094052 + B1_Mus1 SINE Alu 2 139 -9 6 668 289 300 19 37 chr9 10982273 10982428 -113093744 + ORR1C2 LTR MaLR 5 179 -199 6 668 205 265 0 20 chr9 10982431 10982481 -113093691 + C-rich Low_complexity Low_complexity 3 51 0 6 668 303 281 126 26 chr9 10982481 10982641 -113093531 + ORR1C2 LTR MaLR 148 325 -53 6 668 4110 184 2 30 chr9 10983082 10983894 -113092278 - Lx2 LINE L1 0 6997 6208 6 668 222 118 0 0 chr9 10984266 10984300 -113091872 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 6 668 369 0 0 0 chr9 10985736 10985777 -113090395 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 6 668 640 338 15 10 chr9 10985777 10985977 -113090195 - ID_B1 SINE B4 -10 214 14 6 668 312 319 32 0 chr9 10986026 10986120 -113090052 + L1M2 LINE L1 3607 3703 -2440 6 668 2448 218 152 17 chr9 10986279 10986755 -113089417 - RLTR33 LTR ERVK 0 678 145 6 668 1755 146 42 60 chr9 10986755 10987090 -113089082 + ORR1A4 LTR MaLR 1 329 0 6 668 2448 218 152 17 chr9 10987090 10987210 -113088962 - RLTR33 LTR ERVK -534 144 2 6 668 303 152 33 33 chr9 10987351 10987412 -113088760 - RLTR19-int LTR ERVK -6 6131 6071 6 668 2675 184 61 21 chr9 10987817 10988378 -113087794 - RLTR19-int LTR ERVK -1757 4380 3798 6 668 1194 164 17 79 chr9 10988377 10988668 -113087504 - RLTR19-int LTR ERVK -2452 3685 3413 6 668 494 247 17 85 chr9 10989311 10989498 -113086674 - RLTR19-int LTR ERVK -3616 2521 2377 6 668 362 216 73 11 chr9 10989498 10989676 -113086496 + RMER17A LTR ERVK 230 418 -333 6 668 2896 196 14 9 chr9 10989728 10990283 -113085889 - Lx4A LINE L1 -2 7056 6499 6 668 637 200 16 8 chr9 10990283 10990399 -113085773 - L1_Mur2 LINE L1 -6293 419 302 6 668 444 236 33 40 chr9 10990419 10990569 -113085603 - RLTR19-int LTR ERVK -3448 2074 1926 6 668 658 246 36 5 chr9 10990763 10990955 -113085217 - RLTR19-int LTR ERVK -4844 1293 1096 6 668 221 138 24 24 chr9 10990964 10991046 -113085126 + T-rich Low_complexity Low_complexity 3 84 0 6 668 946 189 14 183 chr9 10991054 10991254 -113084918 - RLTR19-int LTR ERVK -5036 1101 933 6 668 944 113 42 7 chr9 10991254 10991397 -113084775 - B1_Mus1 SINE Alu 0 148 1 6 668 946 189 14 183 chr9 10991397 10991546 -113084626 - RLTR19-int LTR ERVK -5205 932 811 6 668 606 28 0 0 chr9 10992056 10992128 -113084044 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 668 344 257 120 40 chr9 10992167 10992317 -113083855 - RLTR19-int LTR ERVK -5892 245 84 6 668 1144 173 163 12 chr9 10992347 10992604 -113083568 - RLTR33 LTR ERVK -371 307 12 6 668 28944 125 24 17 chr9 10992920 10999260 -113076912 + L1_Mus1 LINE L1 177 6567 0 6 668 1279 204 8 0 chr9 10999765 11000000 -113076172 + RMER6D LTR ERVK 1 237 -483 6 668 368 234 42 42 chr9 11000000 11000143 -113076029 + RMER6C LTR ERVK 234 376 -314 1 668 246 118 0 0 chr9 11000143 11000177 -113075995 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 668 552 160 25 0 chr9 11000179 11000298 -113075874 + GA-rich Low_complexity Low_complexity 3 124 0 3 668 414 206 202 17 chr9 11000298 11000471 -113075701 + RMER6A LTR ERVK 282 486 -270 4 668 623 240 53 78 chr9 11000703 11000922 -113075250 + RLTR33 LTR ERVK 1 356 -143 5 668 1751 139 34 7 chr9 11000948 11001245 -113074927 + Lx LINE L1 6340 6644 -10 6 668 267 181 49 122 chr9 11001905 11001987 -113074185 - MTEa LTR MaLR -303 76 1 7 668 411 318 13 13 chr9 11001990 11002140 -113074032 - MTEa-int LTR MaLR -3 1577 1428 7 668 18405 170 71 25 chr9 11002140 11004774 -113071398 + L1VL4 LINE L1 380 3053 -2830 8 668 330 26 0 0 chr9 11004774 11004813 -113071359 + (CAA)n Simple_repeat Simple_repeat 2 40 0 9 668 18405 175 93 34 chr9 11004813 11004945 -113071227 + L1VL4 LINE L1 3054 3158 -2725 8 668 1091 76 14 0 chr9 11004945 11005089 -113071083 + B1_Mm SINE Alu 1 146 -1 1 668 18405 175 93 34 chr9 11005089 11005884 -113070288 + L1VL4 LINE L1 3159 3933 -1950 8 668 903 109 79 14 chr9 11005884 11006014 -113070158 + B1_Mus1 SINE Alu 1 141 -7 1 668 813 21 0 0 chr9 11006014 11006109 -113070063 + (GAA)n Simple_repeat Simple_repeat 2 96 0 1 668 18405 175 93 34 chr9 11006117 11007553 -113068619 + L1VL4 LINE L1 3934 5646 -237 8 668 23 33 0 0 chr9 11007753 11007783 -113068389 + AT_rich Low_complexity Low_complexity 1 30 0 1 668 369 287 18 44 chr9 11007984 11008097 -113068075 + B3 SINE B2 5 114 -102 1 668 295 330 53 22 chr9 11008087 11008228 -113067944 + B3A SINE B2 75 216 0 1 668 282 329 37 55 chr9 11008432 11008596 -113067576 - RMER4B LTR ERVK -398 187 27 1 669 2729 226 69 56 chr9 11010073 11011252 -113064920 + Lx5 LINE L1 888 2056 -3821 1 669 627 78 0 0 chr9 11011252 11011342 -113064830 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 669 2729 217 73 18 chr9 11011342 11011368 -113064804 + Lx5 LINE L1 2057 2080 -3797 1 669 2853 179 30 73 chr9 11011364 11011395 -113064777 + Lx5 LINE L1 3639 3671 -2206 1 669 1639 53 40 4 chr9 11011395 11011621 -113064551 - L1Md_F2 LINE L1 0 6582 6349 1 669 2853 179 30 73 chr9 11011621 11012189 -113063983 + Lx5 LINE L1 3672 4231 -1646 1 669 3035 40 0 0 chr9 11012189 11012543 -113063629 + IAPEY2_LTR LTR ERVK 1 354 -3 2 669 2853 179 30 73 chr9 11012543 11012681 -113063491 + Lx5 LINE L1 4232 4345 -1532 1 669 4581 211 60 5 chr9 11012683 11013865 -113062307 + Lx4A LINE L1 5778 7058 0 2 669 2431 194 10 15 chr9 11013850 11014361 -113061811 + Lx5 LINE L1 5197 5735 -142 1 669 279 111 216 27 chr9 11014361 11014435 -113061737 - B2_Mm1a SINE B2 -39 154 67 2 669 2004 244 103 11 chr9 11014816 11015338 -113060834 + Lx5 LINE L1 6478 7047 -3 2 669 631 164 91 21 chr9 11015339 11015368 -113060804 + Lx5 LINE L1 5724 5750 -127 1 669 210 71 0 0 chr9 11015368 11015396 -113060776 + (TATAA)n Simple_repeat Simple_repeat 5 32 0 2 669 4997 228 37 24 chr9 11015396 11016604 -113059568 + Lx5 LINE L1 5751 6969 -81 1 669 30377 105 19 5 chr9 11016610 11021921 -113054251 + L1Md_F2 LINE L1 213 5586 -297 2 669 7341 82 0 15 chr9 11021921 11022932 -113053240 + L1Md_F2 LINE L1 5587 6582 0 2 669 1437 181 17 0 chr9 11022996 11023283 -113052889 + Lx5 LINE L1 2726 3017 -2860 2 669 1997 206 49 2 chr9 11023284 11023736 -113052436 + Lx5 LINE L1 3874 4346 -1531 2 669 1328 261 62 20 chr9 11023739 11024260 -113051912 - RLTR12A LTR ERVK -4 564 1 2 669 6120 214 47 17 chr9 11024260 11025653 -113050519 + Lx5 LINE L1 4341 5778 -99 2 669 345 24 0 0 chr9 11025653 11025695 -113050477 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 669 6120 276 65 31 chr9 11025695 11026238 -113049934 + Lx5 LINE L1 5779 6362 -688 2 669 1098 349 52 34 chr9 11026241 11026777 -113049395 + Lx5 LINE L1 6485 7030 -20 2 669 272 171 0 47 chr9 11026777 11026863 -113049309 + (TATATG)n Simple_repeat Simple_repeat 4 85 0 3 669 4820 201 82 60 chr9 11027905 11029031 -113047141 - Lx5 LINE L1 -62 6988 5839 3 669 25 75 0 0 chr9 11030127 11030180 -113045992 + AT_rich Low_complexity Low_complexity 1 53 0 3 669 1069 278 65 68 chr9 11031758 11032125 -113044047 + MTEb LTR MaLR 4 369 -10 3 669 1083 186 23 0 chr9 11032427 11032648 -113043524 - Lx LINE L1 -2 6652 6427 3 669 6325 155 18 4 chr9 11032648 11034007 -113042165 - Lx2 LINE L1 -354 6643 5254 3 669 6151 96 11 7 chr9 11034005 11035401 -113040771 - L1VL4 LINE L1 -1745 1814 413 3 669 32 43 0 0 chr9 11036030 11036076 -113040096 + AT_rich Low_complexity Low_complexity 1 46 0 3 669 225 312 0 45 chr9 11036451 11036518 -113039654 + PB1D9 SINE Alu 57 120 0 3 669 380 355 35 81 chr9 11036786 11036958 -113039214 - RSINE1 SINE B4 0 165 2 3 669 332 380 21 54 chr9 11037219 11037386 -113038786 + B3A SINE B2 20 178 -38 4 669 864 213 207 30 chr9 11037386 11037675 -113038497 + RLTR15 LTR ERVK 1 340 -19 4 669 30 0 0 0 chr9 11037709 11037739 -113038433 + AT_rich Low_complexity Low_complexity 1 30 0 4 669 27964 133 11 11 chr9 11038242 11044215 -113031957 - L1_Mus2 LINE L1 0 6566 595 4 669 31 44 0 0 chr9 11044216 11044261 -113031911 + AT_rich Low_complexity Low_complexity 1 45 0 4 669 442 322 148 23 chr9 11045829 11046219 -113029953 - MER44B DNA MER2_type -60 490 44 4 669 439 337 71 58 chr9 11046257 11046566 -113029606 - ORR1E LTR MaLR -8 351 39 4 669 736 273 32 41 chr9 11046797 11047015 -113029157 - B3 SINE B2 0 216 1 4 669 232 216 10 10 chr9 11047077 11047180 -113028992 + (CA)n Simple_repeat Simple_repeat 2 104 0 4 669 3474 211 87 34 chr9 11047950 11048812 -113027360 + RMER13B LTR ERVK 1 908 0 4 669 271 217 0 14 chr9 11049143 11049213 -113026959 - Lx8 LINE L1 -2 7471 7403 5 669 2207 111 56 19 chr9 11049527 11049902 -113026270 + Lx2 LINE L1 6597 6985 -12 5 669 2247 70 3 0 chr9 11049974 11050273 -113025899 + LTRIS2 LTR ERV1 265 564 0 5 669 627 123 0 62 chr9 11050273 11050386 -113025786 + IAP-d-int LTR ERVK 6437 6542 0 5 669 1499 85 4 78 chr9 11050436 11050678 -113025494 + L1_Mus2 LINE L1 6341 6564 -2 5 669 3981 162 61 9 chr9 11050697 11051434 -113024738 - Lx3C LINE L1 -1 6975 6201 5 669 29602 94 8 6 chr9 11052234 11057408 -113018764 + L1Md_F2 LINE L1 406 5580 -303 5 669 6943 96 3 19 chr9 11057414 11058413 -113017759 + L1Md_F2 LINE L1 5587 6569 -13 5 669 303 161 0 0 chr9 11058586 11058642 -113017530 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 669 306 0 0 0 chr9 11059177 11059211 -113016961 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 669 460 197 8 0 chr9 11059802 11059919 -113016253 + L1_Mur2 LINE L1 5238 5355 -522 5 669 706 131 0 0 chr9 11059919 11060041 -113016131 + Lx LINE L1 6525 6646 -8 6 669 1086 329 32 28 chr9 11063639 11064105 -113012067 - Lx7 LINE L1 -870 6826 6359 6 669 471 253 322 20 chr9 11064192 11064487 -113011685 + ORR1D1 LTR MaLR 1 384 0 6 669 1567 239 88 73 chr9 11064490 11064969 -113011203 + ORR1D1-int LTR MaLR 6 491 -879 6 669 4815 155 63 3 chr9 11065059 11065170 -113011002 - Lx2 LINE L1 0 6997 6882 6 669 7181 27 0 4 chr9 11065170 11065995 -113010177 - RLTR13B2 LTR ERVK 0 822 1 6 669 4815 155 63 3 chr9 11065995 11066746 -113009426 - Lx2 LINE L1 -116 6881 6084 6 669 1030 222 56 173 chr9 11066760 11066891 -113009281 - RLTR9F LTR ERVK -9 428 317 6 669 2418 50 0 7 chr9 11066891 11067194 -113008978 + L1Md_T LINE L1 6282 6582 0 6 669 1553 116 20 146 chr9 11067194 11067547 -113008625 - RLTR9F LTR ERVK -121 316 1 6 669 2598 151 39 14 chr9 11067547 11067749 -113008423 - Lx2 LINE L1 -908 6089 5876 6 669 2101 221 45 38 chr9 11067749 11068329 -113007843 + RLTR31A_Mm LTR ERVK 1 584 0 6 669 2598 174 29 8 chr9 11068329 11068825 -113007347 - Lx2 LINE L1 -1122 5875 5379 6 669 5702 109 1 4 chr9 11068829 11069739 -113006433 - L1VL4 LINE L1 -940 2619 1713 6 669 1439 144 25 110 chr9 11069754 11070073 -113006099 - RLTR9F LTR ERVK -4 411 120 6 669 913 153 45 64 chr9 11070520 11070722 -113005450 - RLTR9F LTR ERVK -217 198 1 7 669 1841 109 3 13 chr9 11070723 11071038 -113005134 - L1VL4 LINE L1 -1850 1709 1398 6 669 6183 84 40 1 chr9 11071033 11071931 -113004241 - L1Md_F2 LINE L1 -11 6571 5639 7 669 3317 162 42 1 chr9 11071930 11073099 -113003073 - L1VL4 LINE L1 -2149 1410 194 6 669 865 244 156 88 chr9 11073392 11074053 -113002119 - RLTR19-int LTR ERVK -1818 4319 3614 7 669 909 209 61 41 chr9 11074195 11074440 -113001732 + ORR1D1-int LTR MaLR 1121 1370 0 6 669 995 242 116 35 chr9 11074440 11074786 -113001386 + ORR1D1 LTR MaLR 1 374 0 6 669 462 61 0 0 chr9 11074960 11075026 -113001146 + (TC)n Simple_repeat Simple_repeat 2 67 0 7 669 643 307 21 28 chr9 11075724 11076009 -113000163 + RLTR15 LTR ERVK 1 283 -76 7 669 523 274 28 65 chr9 11076500 11076715 -112999457 + MYSERV6-int LTR ERVK 3993 4199 -4760 7 669 832 181 0 6 chr9 11076717 11076884 -112999288 + L1Md_F LINE L1 104 269 -6347 7 669 24570 72 4 125 chr9 11076915 11078302 -112997870 + L1Md_F LINE L1 1658 3049 -2834 7 669 1991 174 135 76 chr9 11078302 11078856 -112997316 - RLTR6_Mm LTR ERV1 -67 587 1 7 669 24570 72 4 125 chr9 11078856 11081382 -112994790 + L1Md_F LINE L1 3050 5586 -297 7 669 7817 58 3 2 chr9 11081382 11082370 -112993802 + L1Md_F2 LINE L1 5587 6575 -7 7 669 892 291 65 21 chr9 11082373 11082801 -112993371 + MYSERV-int LTR ERVK 3982 4428 -2122 7 669 347 294 92 75 chr9 11082967 11083498 -112992674 + MYSERV16_I-int LTR ERVK 320 623 -1703 8 669 516 246 60 49 chr9 11083500 11083684 -112992488 + RMER4A LTR ERVK 254 439 -27 8 669 345 249 89 17 chr9 11083701 11083881 -112992291 + MYSERV6-int LTR ERVK 7768 7960 -999 7 669 7249 72 3 6 chr9 11083881 11085432 -112990740 - L1Md_F2 LINE L1 0 6582 5036 8 669 3967 92 0 0 chr9 11085433 11086001 -112990171 + L1Md_F2 LINE L1 4483 5050 -833 8 669 984 223 34 17 chr9 11086005 11086297 -112989875 + MYSERV6-int LTR ERVK 7957 8253 -706 7 669 1989 218 19 14 chr9 11086378 11086903 -112989269 + MYSERV6-int LTR ERVK 8417 8905 -54 7 669 2054 160 19 8 chr9 11086903 11087269 -112988903 - Lx LINE L1 0 6654 6285 8 669 1181 260 21 52 chr9 11087269 11087328 -112988844 + MYSERV6-int LTR ERVK 2271 2326 0 7 669 248 275 52 72 chr9 11087328 11087400 -112988772 + RLTR15 LTR ERVK 1 70 -289 7 669 2257 97 110 11 chr9 11087400 11087774 -112988398 + IAPLTR2a LTR ERVK 1 411 0 8 669 248 275 52 72 chr9 11087774 11087854 -112988318 + RLTR15 LTR ERVK 71 150 -209 7 669 794 98 24 0 chr9 11087865 11087988 -112988184 + IAPEz-int LTR ERVK 70 195 -6286 8 669 225 321 0 0 chr9 11087988 11088041 -112988131 + RLTR27 LTR ERVK 223 275 -34 8 669 9720 68 55 33 chr9 11088041 11089479 -112986693 + IAPEz-int LTR ERVK 168 1636 -4845 8 669 5337 59 15 14 chr9 11089478 11090221 -112985951 + IAPEz-int LTR ERVK 5736 6479 -2 8 669 2315 97 111 0 chr9 11090223 11090593 -112985579 + IAPLTR2a LTR ERVK 1 411 0 8 669 344 279 43 62 chr9 11091933 11092143 -112984029 + L1MC3 LINE L1 6853 7058 -937 8 669 407 334 85 64 chr9 11092452 11092794 -112983378 + L1MC3 LINE L1 7371 7719 -66 8 669 389 380 20 29 chr9 11092950 11093194 -112982978 + L2 LINE L2 2651 2892 -527 8 669 429 20 0 0 chr9 11093481 11093531 -112982641 + (TTG)n Simple_repeat Simple_repeat 2 51 0 8 669 27 0 0 0 chr9 11093902 11093929 -112982243 + AT_rich Low_complexity Low_complexity 1 27 0 9 669 1706 133 7 40 chr9 11093931 11094229 -112981943 - Lx3A LINE L1 -6 6975 6688 9 669 2560 153 23 45 chr9 11094653 11095139 -112981033 + MT2C_Mm LTR ERVL 1 475 0 9 669 825 169 62 0 chr9 11096027 11096187 -112979985 + B2_Mm2 SINE B2 3 172 -23 9 669 607 194 159 11 chr9 11098398 11098580 -112977592 + RMER4B LTR ERVK 1 209 -376 9 669 782 213 19 0 chr9 11098606 11098761 -112977411 + RMER12 LTR ERVK 1 158 -1164 9 669 442 202 6 6 chr9 11099038 11099207 -112976965 + CT-rich Low_complexity Low_complexity 1 169 0 9 669 10115 115 3 14 chr9 11099214 11101611 -112974561 - L1_Mus2 LINE L1 -2 6564 4193 9 669 3280 130 5 2 chr9 11101608 11102162 -112974010 - L1_Mus2 LINE L1 -3509 2374 1819 9 669 2036 151 70 21 chr9 11102187 11102572 -112973600 + RLTR9E LTR ERVK 6 409 0 9 669 2186 169 142 59 chr9 11102574 11103485 -112972687 + ETnERV2-int LTR ERVK 2 1740 -5666 9 669 3528 157 24 76 chr9 11103484 11104426 -112971746 + ETnERV2-int LTR ERVK 1730 3098 -4308 9 669 3599 159 45 74 chr9 11104670 11106385 -112969787 + ETnERV2-int LTR ERVK 2371 5443 -1801 9 669 271 209 15 15 chr9 11106395 11106463 -112969709 + ETnERV-int LTR ERVK 2063 2130 -1184 9 669 1255 135 35 31 chr9 11106434 11106663 -112969509 + ETnERV2-int LTR ERVK 6222 6451 -955 9 669 340 109 0 59 chr9 11106732 11106800 -112969372 + RLTR45-int LTR ERVK 6009 6072 -1172 1 669 1505 136 8 8 chr9 11106813 11107065 -112969107 + ETnERV3-int LTR ERVK 5529 5780 -28 1 669 2246 193 84 6 chr9 11107076 11107576 -112968596 + RLTR13D6 LTR ERVK 1 539 -363 1 669 458 92 0 26 chr9 11107576 11107654 -112968518 + ETnERV2-int LTR ERVK 7331 7406 0 9 669 2152 116 74 26 chr9 11107654 11108044 -112968128 + RLTR9E LTR ERVK 1 409 0 9 669 3455 124 4 6 chr9 11108044 11108831 -112967341 - L1VL1 LINE L1 -2087 1730 974 1 669 27697 43 5 3 chr9 11108835 11115024 -112961148 - L1Md_T LINE L1 0 6585 287 1 669 2544 221 72 36 chr9 11115019 11115732 -112960440 - L1Md_F LINE L1 -5495 1024 287 1 669 1042 113 0 17 chr9 11115790 11115970 -112960202 + (TTC)n Simple_repeat Simple_repeat 1 177 0 1 669 188 200 0 18 chr9 11115974 11116030 -112960142 + CT-rich Low_complexity Low_complexity 4 58 0 1 669 1218 283 32 1 chr9 11116031 11116422 -112959750 + MurERV4-int LTR ERVK 188 500 -5280 1 669 444 265 83 25 chr9 11116471 11116591 -112959581 + MurERV4-int LTR ERVK 562 688 -4572 1 669 348 268 87 111 chr9 11116592 11116931 -112959241 + MurERV4-int LTR ERVK 1322 1759 -3501 1 669 1755 213 146 103 chr9 11116936 11117774 -112958398 + MYSERV6-int LTR ERVK 7754 8627 -332 1 669 879 196 65 105 chr9 11118194 11118464 -112957708 + MYSERV-int LTR ERVK 6184 6443 -107 1 669 2058 180 116 48 chr9 11118464 11118989 -112957183 + RLTR31_Mm LTR ERVK 1 561 0 1 669 879 196 65 105 chr9 11118989 11119100 -112957072 + MYSERV-int LTR ERVK 6444 6550 0 1 669 583 327 91 35 chr9 11119113 11119452 -112956720 + RMER4B LTR ERVK 22 379 -206 1 669 2482 152 16 21 chr9 11119608 11120031 -112956141 - BGLII_B LTR ERVK -1 440 20 1 669 3901 70 2 4 chr9 11120031 11120539 -112955633 - L1Md_F2 LINE L1 -107 5776 5269 1 669 4760 112 40 4 chr9 11120539 11121269 -112954903 + L1Md_F2 LINE L1 5825 6580 -2 1 669 868 161 0 0 chr9 11121577 11121720 -112954452 + B1_Mm SINE Alu 1 143 -4 1 669 1022 138 0 6 chr9 11121722 11121897 -112954275 + (GGAGAA)n Simple_repeat Simple_repeat 2 175 0 1 669 441 0 0 0 chr9 11121897 11121945 -112954227 + (GAGAA)n Simple_repeat Simple_repeat 1 49 0 1 669 200 342 0 0 chr9 11122438 11122511 -112953661 - MER5A DNA MER1_type 0 189 117 1 669 1116 88 0 0 chr9 11123195 11123342 -112952830 + B1_Mm SINE Alu 1 147 0 1 669 425 336 37 0 chr9 11124649 11124783 -112951389 + B3A SINE B2 1 139 -59 1 669 654 283 139 83 chr9 11124821 11125134 -112951038 + L1MC LINE L1 2879 3178 -2968 1 669 194 0 39 0 chr9 11125134 11125160 -112951012 + (CAA)n Simple_repeat Simple_repeat 3 29 0 1 669 654 283 139 83 chr9 11125160 11125281 -112950891 + L1MC LINE L1 3179 3302 -2844 1 669 333 0 0 0 chr9 11125281 11125318 -112950854 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 1 669 654 283 139 83 chr9 11125318 11125536 -112950636 + L1MC LINE L1 3303 3569 -2577 1 669 35 41 0 0 chr9 11125930 11125979 -112950193 + AT_rich Low_complexity Low_complexity 1 49 0 1 669 1484 227 50 58 chr9 11126002 11126434 -112949738 - Lx7 LINE L1 0 7696 7264 1 669 4485 167 72 22 chr9 11126434 11127346 -112948826 + RMER17B LTR ERVK 1 958 0 1 669 1484 227 50 58 chr9 11127346 11127395 -112948777 - Lx7 LINE L1 -433 7263 7219 1 669 3073 66 0 26 chr9 11127430 11127850 -112948322 - L1_Mus1 LINE L1 -2 6565 6157 1 669 4295 249 52 11 chr9 11127907 11128978 -112947194 - Lx7 LINE L1 -486 7210 6096 1 669 307 336 35 17 chr9 11129085 11129200 -112946972 + Lx5 LINE L1 6833 6949 -101 1 669 463 261 14 35 chr9 11129195 11129338 -112946834 - Lx5 LINE L1 -247 6803 6664 1 669 2052 174 79 15 chr9 11129341 11129785 -112946387 - RLTR31_Mm LTR ERVK -62 491 1 1 669 752 216 60 89 chr9 11129787 11130056 -112946116 - MYSERV6-int LTR ERVK -86 8873 8613 1 669 1164 225 54 87 chr9 11130478 11130848 -112945324 - MYSERV6-int LTR ERVK -334 8625 8268 1 669 301 119 0 0 chr9 11130844 11130886 -112945286 - MYSERV-int LTR ERVK -774 5776 5735 1 669 1992 258 72 18 chr9 11130886 11131633 -112944539 - Lx5 LINE L1 -632 6418 5587 1 669 2092 31 4 4 chr9 11131633 11131889 -112944283 - L1Md_F3 LINE L1 0 6584 6329 1 669 289 54 0 0 chr9 11131909 11131946 -112944226 + L1_Mm LINE L1 5583 5619 -264 1 669 265 196 0 0 chr9 11131942 11131993 -112944179 - Lx5 LINE L1 -281 5596 5546 1 669 8013 226 46 7 chr9 11131993 11134297 -112941875 - Lx5 LINE L1 -1106 5944 3548 1 669 37438 49 2 4 chr9 11134329 11140959 -112935213 - L1Md_T LINE L1 -2 6583 1 1 83 994 204 4 4 chr9 11140968 11141200 -112934972 - Lx5 LINE L1 -2347 3533 3302 1 670 2100 184 25 11 chr9 11141206 11141645 -112934527 - Lx5 LINE L1 -3247 2630 2186 1 670 927 228 18 18 chr9 11141730 11141949 -112934223 - RLTR11A2 LTR ERVK -308 219 1 1 670 671 283 81 103 chr9 11142137 11142768 -112933404 - MYSERV-int LTR ERVK -1037 5513 4897 1 670 373 158 25 62 chr9 11142814 11142895 -112933277 - MYSERV16_I-int LTR ERVK -1752 574 497 1 670 578 14 14 0 chr9 11142895 11142966 -112933206 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 670 866 262 9 9 chr9 11142969 11143192 -112932980 - RLTR11A2 LTR ERVK -304 223 1 1 670 1177 203 62 0 chr9 11143195 11143501 -112932671 - Lx5 LINE L1 -4141 1736 1412 1 670 952 261 21 12 chr9 11143712 11144234 -112931938 - Lx5 LINE L1 -4449 1428 904 1 670 1198 61 0 0 chr9 11144263 11144410 -112931762 - B1_Mm SINE Alu 0 147 1 1 670 295 222 0 24 chr9 11144884 11144967 -112931205 - Lx7 LINE L1 -1632 6064 5984 1 670 2014 206 53 2 chr9 11144979 11145451 -112930721 - Lx7 LINE L1 -435 5445 4950 1 670 259 243 196 31 chr9 11145656 11145912 -112930260 + L1M4b LINE L1 2141 2437 -4665 1 670 189 74 0 0 chr9 11146476 11146503 -112929669 + (A)n Simple_repeat Simple_repeat 1 27 0 1 670 609 339 47 43 chr9 11146631 11146884 -112929288 + B4 SINE B4 39 292 0 1 670 342 0 0 0 chr9 11146925 11146963 -112929209 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 670 474 91 0 0 chr9 11146963 11147039 -112929133 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 670 830 283 55 70 chr9 11147103 11147415 -112928757 + ERVL-B4-int LTR ERVL 2273 2579 -3135 1 670 352 306 31 26 chr9 11147952 11148143 -112928029 + ERVL-B4-int LTR ERVL 3520 3711 -2046 1 670 366 75 21 41 chr9 11148447 11148544 -112927628 + (TTTTTG)n Simple_repeat Simple_repeat 5 99 0 1 670 34050 79 15 9 chr9 11149065 11154994 -112921178 - L1Md_F2 LINE L1 -2 6580 631 1 670 502 150 17 0 chr9 11155128 11155248 -112920924 + CT-rich Low_complexity Low_complexity 1 122 0 1 670 549 347 85 5 chr9 11155432 11155632 -112920540 + ID_B1 SINE B4 2 217 -7 1 670 8471 58 8 1 chr9 11155755 11156858 -112919314 - L1_Mm LINE L1 -1284 4599 3489 1 670 3199 45 2 8 chr9 11156858 11157260 -112918912 + L1Md_F2 LINE L1 6183 6582 0 1 670 26 0 0 0 chr9 11157272 11157298 -112918874 + AT_rich Low_complexity Low_complexity 1 26 0 1 670 243 263 78 39 chr9 11157515 11157618 -112918554 - MLT1F-int LTR MaLR -958 531 425 1 670 212 86 0 28 chr9 11157646 11157682 -112918490 + (TTC)n Simple_repeat Simple_repeat 2 36 0 1 670 29 104 0 0 chr9 11157718 11157824 -112918348 + AT_rich Low_complexity Low_complexity 1 106 0 1 670 1126 241 30 72 chr9 11158190 11158280 -112917892 + Lx9 LINE L1 7013 7097 -547 1 670 2172 108 60 82 chr9 11158280 11158682 -112917490 + RLTR9C LTR ERVK 1 393 0 1 670 1126 241 30 72 chr9 11158682 11158922 -112917250 + Lx9 LINE L1 7098 7329 -315 1 670 483 33 0 0 chr9 11160032 11160093 -112916079 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 670 14580 252 35 29 chr9 11161099 11161156 -112915016 + MYSERV6-int LTR ERVK 452 508 -8451 1 670 486 0 0 0 chr9 11161156 11161210 -112914962 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 670 14580 252 35 29 chr9 11161210 11162563 -112913609 + MYSERV6-int LTR ERVK 509 1929 -7030 1 670 4573 132 18 73 chr9 11162563 11163504 -112912668 - RMER17D LTR ERVK 0 889 1 1 670 14580 257 45 41 chr9 11163504 11167034 -112909138 + MYSERV6-int LTR ERVK 2 4615 -4344 1 670 2236 250 65 0 chr9 11167048 11167600 -112908572 + RMER1B Other Other 479 1066 0 1 670 21 0 0 0 chr9 11167847 11167868 -112908304 + AT_rich Low_complexity Low_complexity 1 21 0 1 670 195 42 0 0 chr9 11168549 11168573 -112907599 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 1 670 496 248 9 0 chr9 11168662 11168771 -112907401 - RMER1B Other Other -375 691 582 1 670 1048 332 76 55 chr9 11168762 11169687 -112906485 - RMER1B Other Other -559 507 1 1 670 258 32 0 0 chr9 11171135 11171166 -112905006 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 670 245 314 0 0 chr9 11171182 11171268 -112904904 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 670 205 227 11 22 chr9 11171268 11171358 -112904814 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 1 670 336 336 104 14 chr9 11171605 11171825 -112904347 - L1MC1 LINE L1 -30 6303 6064 1 670 496 249 105 19 chr9 11171858 11172067 -112904105 - L1MC1 LINE L1 -685 5648 5422 1 670 361 304 29 7 chr9 11172285 11172421 -112903751 - L1MC1 LINE L1 -946 5200 5062 1 670 1080 249 70 31 chr9 11173095 11173510 -112902662 + L1MB1 LINE L1 5417 5840 -349 1 670 198 0 0 0 chr9 11174086 11174108 -112902064 + (TTATA)n Simple_repeat Simple_repeat 4 25 0 1 670 22 0 0 0 chr9 11175511 11175533 -112900639 + AT_rich Low_complexity Low_complexity 1 22 0 1 670 26 0 0 0 chr9 11175705 11175731 -112900441 + AT_rich Low_complexity Low_complexity 1 26 0 1 670 212 185 36 18 chr9 11175753 11175808 -112900364 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 670 435 19 0 0 chr9 11175930 11175982 -112900190 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 670 236 325 48 0 chr9 11176158 11176241 -112899931 + B4A SINE B4 1 87 -205 1 670 417 109 0 0 chr9 11176399 11176463 -112899709 + (CAT)n Simple_repeat Simple_repeat 3 66 0 1 670 38 39 0 0 chr9 11177691 11177743 -112898429 + AT_rich Low_complexity Low_complexity 1 52 0 1 670 305 141 11 32 chr9 11177805 11177811 -112898361 + (TA)n Simple_repeat Simple_repeat 2 7 0 1 670 315 0 0 0 chr9 11177811 11177846 -112898326 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 670 305 141 11 32 chr9 11177846 11177934 -112898238 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 670 2666 83 62 3 chr9 11178415 11178789 -112897383 + MTA_Mm LTR MaLR 1 396 0 1 670 2423 94 31 5 chr9 11178789 11179173 -112896999 + MTA_Mm-int LTR MaLR 1 394 -704 1 670 6697 86 15 13 chr9 11179175 11180199 -112895973 + L1VL1 LINE L1 421 1447 -4436 1 670 3527 35 28 5 chr9 11180199 11180625 -112895547 - RLTR10C LTR ERVK 0 436 1 1 670 5127 98 1 10 chr9 11180625 11181171 -112895001 + L1VL1 LINE L1 1448 1987 -3896 1 670 2662 176 75 76 chr9 11181172 11182105 -112894067 - Lx2 LINE L1 -6 6648 5716 1 670 3437 189 50 16 chr9 11182070 11182753 -112893419 + Lx2B LINE L1 6284 6989 -11 1 670 939 186 26 0 chr9 11183232 11183425 -112892747 - Lx2 LINE L1 -5 7003 6806 1 670 1194 183 24 121 chr9 11183425 11183805 -112892367 - Lx2 LINE L1 -691 6306 5964 1 670 493 171 11 0 chr9 11183805 11183893 -112892279 + 4.5SRNA scRNA scRNA 6 94 0 1 670 305 358 57 48 chr9 11185444 11185684 -112890488 + MIR SINE MIR 3 241 -21 1 670 218 205 0 0 chr9 11185983 11186022 -112890150 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 1 670 23 0 0 0 chr9 11186120 11186143 -112890029 + AT_rich Low_complexity Low_complexity 1 23 0 1 670 464 0 18 0 chr9 11186260 11186316 -112889856 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 670 378 285 99 31 chr9 11186339 11186413 -112889759 - Lx9 LINE L1 -215 7429 7344 1 670 414 0 0 0 chr9 11186413 11186459 -112889713 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 670 900 302 199 13 chr9 11186459 11186976 -112889196 - Lx9 LINE L1 -301 7343 6737 1 670 253 148 54 36 chr9 11186976 11187088 -112889084 + (TCTCTG)n Simple_repeat Simple_repeat 5 118 0 1 670 344 127 18 0 chr9 11187094 11187149 -112889023 - HAL1-3A_ME LINE L1 -825 2033 1978 1 670 662 299 128 28 chr9 11187180 11187391 -112888781 + Lx9 LINE L1 6358 6596 -1048 1 670 1680 220 16 221 chr9 11187391 11188160 -112888012 + RMER19C LTR ERVK 1 611 0 1 670 662 299 128 28 chr9 11188160 11188268 -112887904 + Lx9 LINE L1 6597 6708 -936 1 670 1056 278 125 19 chr9 11188268 11188628 -112887544 + MTD LTR MaLR 2 399 -20 2 670 355 310 100 32 chr9 11188806 11188996 -112887176 + L1M2 LINE L1 4571 4773 -1370 2 670 25 51 0 0 chr9 11189398 11189437 -112886735 + AT_rich Low_complexity Low_complexity 1 39 0 2 670 1650 148 89 19 chr9 11189794 11189975 -112886197 + Lx LINE L1 6311 6518 -136 2 670 261 0 0 0 chr9 11189975 11190004 -112886168 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 670 1650 148 89 19 chr9 11190004 11190138 -112886034 + Lx LINE L1 6519 6648 -6 2 670 3386 124 55 88 chr9 11190815 11191591 -112884581 - RMER17A LTR ERVK 0 751 1 2 670 753 255 111 16 chr9 11193142 11193385 -112882787 - MTC LTR MaLR -8 413 148 2 670 23 0 0 0 chr9 11194220 11194243 -112881929 + AT_rich Low_complexity Low_complexity 1 23 0 2 670 363 119 0 0 chr9 11194477 11194544 -112881628 + (GAAA)n Simple_repeat Simple_repeat 3 69 0 2 670 2643 218 26 9 chr9 11194554 11195097 -112881075 - Lx7 LINE L1 -335 7361 6810 2 670 555 330 40 20 chr9 11197387 11197585 -112878587 - B3 SINE B2 -10 206 5 2 670 262 245 164 7 chr9 11199053 11199193 -112876979 + Charlie1 DNA MER1_type 2583 2744 -37 2 670 367 221 40 32 chr9 11199199 11199325 -112876847 + Lx7 LINE L1 7570 7696 0 2 670 757 151 20 0 chr9 11199330 11199476 -112876696 + GA-rich Low_complexity Low_complexity 4 152 0 2 670 1870 253 5 7 chr9 11199526 11199967 -112876205 + BGLII_B LTR ERVK 2 441 0 2 670 2565 219 60 9 chr9 11199981 11200080 -112876092 - RLTR20B3 LTR ERVK 0 577 476 2 670 393 22 0 0 chr9 11200080 11200126 -112876046 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 670 2565 219 60 9 chr9 11200126 11200575 -112875597 - RLTR20B3 LTR ERVK -102 475 2 2 670 374 257 127 17 chr9 11200677 11200831 -112875341 - B3 SINE B2 -4 191 38 2 670 338 354 0 0 chr9 11201766 11201862 -112874310 + B1F1 SINE Alu 46 141 -8 2 670 21 0 0 0 chr9 11201969 11201990 -112874182 + AT_rich Low_complexity Low_complexity 1 21 0 2 670 23 0 0 0 chr9 11202045 11202068 -112874104 + AT_rich Low_complexity Low_complexity 1 23 0 2 670 545 285 68 24 chr9 11202517 11202722 -112873450 + B3A SINE B2 1 216 0 2 670 298 336 84 0 chr9 11202854 11202985 -112873187 + B1F SINE Alu 3 144 -5 2 670 1451 195 60 108 chr9 11203271 11203635 -112872537 - ORR1B1 LTR MaLR -8 386 42 2 670 4658 200 33 110 chr9 11203635 11204814 -112871358 - ORR1B1-int LTR MaLR 0 1963 876 2 670 28 29 0 0 chr9 11204978 11205013 -112871159 + AT_rich Low_complexity Low_complexity 1 35 0 2 670 1454 182 127 3 chr9 11205091 11205406 -112870766 + RLTR15 LTR ERVK 6 359 0 2 670 1176 48 0 0 chr9 11205958 11206104 -112870068 + B1_Mus2 SINE Alu 1 146 -1 2 670 198 0 0 0 chr9 11206109 11206131 -112870041 + (A)n Simple_repeat Simple_repeat 1 22 0 2 670 1452 164 19 0 chr9 11206367 11206636 -112869536 + Lx2 LINE L1 6722 6995 -2 2 670 300 363 101 57 chr9 11207284 11207512 -112868660 + B4A SINE B4 55 292 0 2 670 1084 53 0 0 chr9 11207794 11207926 -112868246 - B1_Mus2 SINE Alu -15 132 1 2 670 296 132 75 0 chr9 11207926 11207979 -112868193 - URR1B DNA MER1_type -3 222 166 2 670 2330 36 0 260 chr9 11207979 11208405 -112867767 - RLTR10B2 LTR ERVK 0 365 67 2 670 2846 44 3 6 chr9 11208405 11208751 -112867421 + IAPLTR4 LTR ERVK 1 345 0 2 670 2330 36 0 260 chr9 11208751 11208817 -112867355 - RLTR10B2 LTR ERVK -299 66 1 2 670 226 221 78 0 chr9 11208817 11208894 -112867278 - URR1B DNA MER1_type -54 171 89 2 670 3102 86 2 0 chr9 11210623 11211044 -112865128 - L1_Mus2 LINE L1 0 6566 6145 2 670 612 179 0 0 chr9 11211121 11211238 -112864934 + (TA)n Simple_repeat Simple_repeat 2 118 0 2 670 556 351 43 45 chr9 11211679 11212142 -112864030 - MuRRS-int LTR ERV1 -2446 2244 1783 2 670 4778 87 3 5 chr9 11213345 11213674 -112862498 + L1_Mus3 LINE L1 5777 6107 -531 2 670 278 26 0 25 chr9 11213674 11213714 -112862458 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 670 4778 87 3 5 chr9 11213714 11214039 -112862133 + L1_Mus3 LINE L1 6108 6429 -209 2 670 3195 8 0 39 chr9 11214039 11214421 -112861751 + IAPLTR1_Mm LTR ERVK 1 367 0 2 670 3416 78 32 14 chr9 11214421 11215135 -112861037 + IAPEz-int LTR ERVK 8 662 -5819 2 670 442 66 0 32 chr9 11215135 11215198 -112860974 + IAPEz-int LTR ERVK 1359 1419 -5062 2 670 1763 123 4 15 chr9 11215187 11215452 -112860720 + IAPEz-int LTR ERVK 2236 2497 -5183 2 670 914 81 24 0 chr9 11215449 11215572 -112860600 + IAPEz-int LTR ERVK 4785 4910 -2770 2 670 26147 18 2 2 chr9 11215572 11218529 -112857643 + IAPEz-int LTR ERVK 3525 6481 0 2 670 3205 5 0 39 chr9 11218529 11218911 -112857261 + IAPLTR1_Mm LTR ERVK 1 367 0 2 670 1279 137 9 5 chr9 11218911 11219123 -112857049 + L1_Mus3 LINE L1 6425 6637 -1 2 670 44 56 0 0 chr9 11219123 11219195 -112856977 + AT_rich Low_complexity Low_complexity 1 72 0 2 670 21 36 0 0 chr9 11219285 11219313 -112856859 + AT_rich Low_complexity Low_complexity 1 28 0 2 670 22 35 0 0 chr9 11219332 11219361 -112856811 + AT_rich Low_complexity Low_complexity 1 29 0 2 670 252 86 0 0 chr9 11219630 11219665 -112856507 + (CTTA)n Simple_repeat Simple_repeat 1 35 0 2 670 189 0 0 0 chr9 11219785 11219806 -112856366 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2 670 786 292 51 12 chr9 11219808 11220064 -112856108 + L1_Mur3 LINE L1 57 322 -7406 2 670 7777 194 17 14 chr9 11220061 11221747 -112854425 + Lx2B LINE L1 1396 3085 -2801 2 670 1917 245 55 45 chr9 11221747 11222325 -112853847 + RLTR31A_Mm LTR ERVK 1 584 0 2 670 305 181 0 0 chr9 11222325 11222408 -112853764 + Lx2B LINE L1 3071 3153 -2724 2 670 261 70 53 0 chr9 11222409 11222466 -112853706 + (CAA)n Simple_repeat Simple_repeat 2 61 0 2 670 698 173 12 24 chr9 11222478 11222644 -112853528 + MusHAL1 LINE L1 1946 2109 -603 2 670 316 171 0 26 chr9 11222632 11222710 -112853462 + L1_Mur1 LINE L1 1545 1620 -4266 2 670 974 169 10 0 chr9 11222693 11222888 -112853284 + Lx2B LINE L1 4091 4287 -1590 2 670 5859 177 22 176 chr9 11223508 11223828 -112852344 + Lx2B LINE L1 4294 4634 -1243 2 670 243 61 0 0 chr9 11223828 11223861 -112852311 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 2 670 6725 189 19 108 chr9 11223861 11224298 -112851874 + Lx2B LINE L1 4635 5068 -1932 2 670 1418 134 188 10 chr9 11224298 11224591 -112851581 + IAPLTR4 LTR ERVK 1 345 0 2 670 6725 189 19 108 chr9 11224591 11226526 -112849646 + Lx2B LINE L1 5069 6995 -5 2 670 4601 202 65 10 chr9 11226570 11227326 -112848846 + L1_Mur3 LINE L1 1241 2056 -3824 2 670 441 90 0 0 chr9 11227326 11227393 -112848779 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 670 4601 231 141 28 chr9 11227393 11228665 -112847507 + L1_Mur3 LINE L1 2050 3561 -2316 2 670 2216 189 49 39 chr9 11228708 11229276 -112846896 - L1_Mur3 LINE L1 -3135 2745 2172 2 670 1021 194 81 0 chr9 11229273 11229531 -112846641 + L1_Mur3 LINE L1 3628 3906 -1974 2 670 546 183 113 0 chr9 11229531 11229646 -112846526 + RMER6C LTR ERVK 1 128 -562 2 670 445 165 9 149 chr9 11229624 11229731 -112846441 + MT2B LTR ERVL 185 276 -325 2 670 1158 158 36 9 chr9 11229731 11229955 -112846217 + L1_Mur3 LINE L1 3935 4164 -1716 2 670 568 197 41 8 chr9 11229958 11230081 -112846091 + L1_Mur3 LINE L1 4684 4810 -1070 2 670 3677 153 15 31 chr9 11230081 11230733 -112845439 - RLTR26 LTR ERVK 0 642 1 2 670 832 172 7 191 chr9 11230733 11231027 -112845145 + L1_Mur3 LINE L1 4805 5044 -836 2 670 3163 184 97 34 chr9 11231789 11232519 -112843653 - Lx2B LINE L1 0 7000 6225 2 670 226 345 96 17 chr9 11233742 11233857 -112842315 - B3 SINE B2 -5 211 88 2 670 420 156 13 13 chr9 11233857 11233935 -112842237 - Lx2A LINE L1 -711 6297 6220 2 670 301 336 45 52 chr9 11234029 11234183 -112841989 - HAL1-3A_ME LINE L1 -422 2436 2284 2 670 310 278 17 11 chr9 11234653 11234831 -112841341 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 670 569 212 0 8 chr9 11235584 11235850 -112840322 + (TG)n Simple_repeat Simple_repeat 1 263 0 2 670 21 0 0 0 chr9 11235967 11235988 -112840184 + AT_rich Low_complexity Low_complexity 1 21 0 2 670 4331 156 103 13 chr9 11236206 11237082 -112839090 + RMER17B LTR ERVK 1 955 -3 2 670 325 313 33 7 chr9 11237215 11237366 -112838806 + L1MA4 LINE L1 5777 5931 -369 2 670 24 0 0 0 chr9 11237971 11237995 -112838177 + AT_rich Low_complexity Low_complexity 1 24 0 2 670 3235 143 5 32 chr9 11239264 11239822 -112836350 - Lx LINE L1 -7 6647 6105 2 670 2142 129 18 3 chr9 11239822 11240157 -112836015 + Lx LINE L1 5775 6114 -540 2 670 585 256 15 0 chr9 11240825 11240962 -112835210 + B1_Mur2 SINE Alu 1 139 -10 2 670 858 279 121 11 chr9 11242228 11242594 -112833578 + MT2A LTR ERVL 1 453 -80 2 670 603 51 0 0 chr9 11242599 11242678 -112833494 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 670 1036 105 7 0 chr9 11243343 11243495 -112832677 - L1_Mus2 LINE L1 0 6566 6414 2 670 392 125 0 0 chr9 11243496 11243552 -112832620 + L1_Mus2 LINE L1 6346 6401 -166 2 670 26 0 0 0 chr9 11244309 11244335 -112831837 + AT_rich Low_complexity Low_complexity 1 26 0 2 670 181 274 63 16 chr9 11245752 11245815 -112830357 - L4 LINE RTE -390 1639 1574 2 670 271 289 126 73 chr9 11246098 11246359 -112829813 + Lx8 LINE L1 7199 7473 0 2 670 596 124 10 0 chr9 11246376 11246473 -112829699 + B2_Mm2 SINE B2 1 98 -97 2 670 300 325 80 18 chr9 11246566 11247100 -112829072 + L1M4b LINE L1 1656 2220 -5114 2 670 994 272 34 9 chr9 11247300 11247659 -112828513 + Lx2B LINE L1 6587 6972 -4 2 670 989 242 187 7 chr9 11247936 11248240 -112827932 + MTC LTR MaLR 63 421 0 2 670 1090 89 0 0 chr9 11248951 11249097 -112827075 - B1_Mus1 SINE Alu 0 148 3 2 670 525 55 0 0 chr9 11249208 11249281 -112826891 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 670 250 360 113 43 chr9 11249431 11249617 -112826555 - L2 LINE L2 -989 2430 2232 2 670 5405 191 9 14 chr9 11250772 11252204 -112823968 - Lx2B LINE L1 -801 6196 4721 2 670 294 252 43 29 chr9 11252204 11252343 -112823829 - RLTR13D3 LTR ERVK -42 1072 983 2 670 224 184 0 0 chr9 11252632 11252670 -112823502 - B2_Mm2 SINE B2 -157 38 1 2 670 23 0 0 0 chr9 11252676 11252699 -112823473 + AT_rich Low_complexity Low_complexity 1 23 0 2 670 20075 141 46 15 chr9 11252930 11255778 -112820394 - L1_Mus3 LINE L1 -519 6119 3179 2 670 186 43 0 0 chr9 11255778 11255801 -112820371 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 670 20075 151 26 17 chr9 11255801 11256773 -112819399 - L1_Mus3 LINE L1 -2705 3178 2198 2 670 460 124 0 58 chr9 11256771 11256874 -112819298 + L1_Mus3 LINE L1 2009 2105 -3778 2 670 3914 168 61 11 chr9 11256899 11257657 -112818515 - RMER17D2 LTR ERVK -13 796 1 2 670 5647 130 48 20 chr9 11257657 11259317 -112816855 - L1VL1 LINE L1 -1736 1962 248 2 670 1738 205 11 13 chr9 11259318 11259688 -112816484 - Lx2B LINE L1 -5864 1120 751 2 670 2935 116 33 7 chr9 11259688 11260112 -112816060 - RLTR10C LTR ERVK -1 435 1 2 670 231 222 63 0 chr9 11260227 11260290 -112815882 - Lx2B LINE L1 -6231 753 687 2 670 737 208 33 23 chr9 11260292 11260489 -112815683 - MTC-int LTR MaLR -1761 202 1 2 670 1307 250 14 3 chr9 11260489 11260778 -112815394 - MTC LTR MaLR 0 421 130 2 670 22 0 0 0 chr9 11261340 11261362 -112814810 + AT_rich Low_complexity Low_complexity 1 22 0 2 670 460 387 15 8 chr9 11261461 11261729 -112814443 - Lx8 LINE L1 -876 6597 6328 2 670 237 132 0 0 chr9 11261925 11261963 -112814209 + (CTTA)n Simple_repeat Simple_repeat 2 39 0 2 670 31 26 0 0 chr9 11262685 11262723 -112813449 + AT_rich Low_complexity Low_complexity 1 38 0 2 670 22 35 0 0 chr9 11263074 11263103 -112813069 + AT_rich Low_complexity Low_complexity 1 29 0 2 670 353 338 24 14 chr9 11263370 11263580 -112812592 - L1_Mur3 LINE L1 -1114 4766 4555 2 670 1010 69 7 65 chr9 11263658 11263813 -112812359 - B1_Mus1 SINE Alu -2 146 1 3 670 22 35 0 0 chr9 11263918 11263947 -112812225 + AT_rich Low_complexity Low_complexity 1 29 0 3 670 592 195 81 0 chr9 11264959 11265082 -112811090 - RMER6D LTR ERVK -4 716 584 3 670 423 131 0 0 chr9 11265107 11265168 -112811004 - RMER6D LTR ERVK -659 61 1 3 670 390 335 108 5 chr9 11265607 11265802 -112810370 - B3 SINE B2 0 216 2 3 670 28 61 0 0 chr9 11266093 11266142 -112810030 + AT_rich Low_complexity Low_complexity 1 49 0 3 670 213 211 0 0 chr9 11266345 11266383 -112809789 + (CATA)n Simple_repeat Simple_repeat 3 40 0 3 670 263 337 156 48 chr9 11266789 11267410 -112808762 + Arthur1B DNA Tip100 18 706 -519 3 670 321 325 48 12 chr9 11267694 11267859 -112808313 + L1M4b LINE L1 1768 1938 -5396 3 670 795 97 0 0 chr9 11267878 11267992 -112808180 + (GGAA)n Simple_repeat Simple_repeat 2 115 0 3 670 1456 156 180 22 chr9 11267992 11268352 -112807820 + RLTR11B LTR ERVK 7 423 -30 3 670 759 42 0 0 chr9 11268360 11268455 -112807717 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 3 670 735 44 0 0 chr9 11268464 11268555 -112807617 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 670 274 315 14 0 chr9 11269988 11270061 -112806111 - ID4_ SINE ID -2 81 8 3 670 389 20 20 0 chr9 11270365 11270415 -112805757 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 670 2825 145 26 2 chr9 11270415 11270870 -112805302 + Lx3C LINE L1 6509 6974 -2 3 671 330 297 21 86 chr9 11272254 11272394 -112803778 - MTEb LTR MaLR 0 379 249 3 671 189 0 0 0 chr9 11272497 11272518 -112803654 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 3 671 5106 128 23 47 chr9 11272637 11273301 -112802871 - Lx LINE L1 -210 6444 5782 3 671 1554 107 16 0 chr9 11273301 11273544 -112802628 + L1_Mus3 LINE L1 6392 6638 0 3 671 5106 142 22 49 chr9 11273544 11273833 -112802339 - Lx LINE L1 -102 5781 5512 3 671 286 111 0 22 chr9 11273832 11273878 -112802294 - Lx LINE L1 -2347 3536 3492 3 671 1153 155 5 0 chr9 11273871 11274064 -112802108 - L1VL2 LINE L1 -6076 259 66 3 671 369 0 0 0 chr9 11274668 11274709 -112801463 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 671 2893 71 39 0 chr9 11276489 11276870 -112799302 + MTA_Mm LTR MaLR 1 396 0 3 671 180 111 0 0 chr9 11276967 11276994 -112799178 + (TGG)n Simple_repeat Simple_repeat 1 27 0 3 671 783 241 9 48 chr9 11278187 11278414 -112797758 + RLTR18-int LTR ERVK 5136 5353 -8 3 671 305 237 145 0 chr9 11278419 11278495 -112797677 + RLTR18B LTR ERVK 1 87 -425 3 671 1015 308 30 52 chr9 11278507 11278873 -112797299 + RLTR18B LTR ERVK 155 512 0 3 671 441 0 0 0 chr9 11280428 11280477 -112795695 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 671 22 0 0 0 chr9 11282039 11282061 -112794111 + AT_rich Low_complexity Low_complexity 1 22 0 3 671 568 385 36 27 chr9 11282505 11282841 -112793331 + MLT1A0 LTR MaLR 10 348 -17 3 671 428 317 107 33 chr9 11282957 11283107 -112793065 - B3A SINE B2 -18 180 20 3 671 204 351 85 8 chr9 11283288 11283417 -112792755 + MIRb SINE MIR 85 223 -45 3 671 921 266 38 38 chr9 11283635 11283897 -112792275 - MTEa LTR MaLR -111 268 7 3 671 836 46 9 0 chr9 11284367 11284476 -112791696 + (GAAA)n Simple_repeat Simple_repeat 1 110 0 3 671 534 169 7 14 chr9 11286136 11286280 -112789892 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 3 671 1237 172 11 4 chr9 11287114 11287383 -112788789 + Lx4B LINE L1 3102 3372 -2505 3 671 9633 58 12 0 chr9 11287382 11289308 -112786864 - L1Md_F3 LINE L1 0 6584 4637 3 671 593 184 0 0 chr9 11289305 11289419 -112786753 + MusHAL1 LINE L1 2171 2284 -428 3 671 251 267 11 11 chr9 11289412 11289503 -112786669 + L1M3 LINE L1 5107 5197 -943 3 671 440 322 98 16 chr9 11289617 11289986 -112786186 + L1M1 LINE L1 5357 5755 -545 3 671 3143 173 74 10 chr9 11290072 11290479 -112785693 + Lx4B LINE L1 3461 3870 -2007 3 671 225 0 0 0 chr9 11290479 11290504 -112785668 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 671 3143 173 74 10 chr9 11290504 11290768 -112785404 + Lx4B LINE L1 3871 4175 -1702 3 671 1945 62 8 0 chr9 11290793 11291049 -112785123 - L1Md_F2 LINE L1 -1 6581 6324 3 671 34355 80 3 3 chr9 11291094 11297449 -112778723 - L1Md_F2 LINE L1 -13 6572 124 3 671 429 62 24 24 chr9 11297449 11297532 -112778640 + (TTTTTG)n Simple_repeat Simple_repeat 5 87 0 3 671 966 125 14 0 chr9 11297532 11297676 -112778496 - B1_Mm SINE Alu 0 147 2 3 671 993 173 65 9 chr9 11297679 11297895 -112778277 + Lx4B LINE L1 4162 4389 -1488 3 671 5177 189 23 39 chr9 11297892 11299256 -112776916 + Lx4B LINE L1 4871 6909 -551 3 671 487 277 91 17 chr9 11299270 11299446 -112776726 + Lx5 LINE L1 6845 7033 -17 3 671 25 31 0 0 chr9 11299582 11299614 -112776558 + AT_rich Low_complexity Low_complexity 1 32 0 3 671 5296 87 3 1 chr9 11301529 11302247 -112773925 - L1_Mus1 LINE L1 -2 6565 5847 3 671 758 278 53 118 chr9 11302855 11303254 -112772918 + MTE2a LTR MaLR 3 375 -4 3 671 317 43 21 0 chr9 11303264 11303311 -112772861 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 671 291 28 0 0 chr9 11303311 11303347 -112772825 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 671 23 0 0 0 chr9 11303593 11303616 -112772556 + AT_rich Low_complexity Low_complexity 1 23 0 3 671 1912 138 18 48 chr9 11304489 11304823 -112771349 + ORR1A3 LTR MaLR 3 326 0 3 671 5777 79 28 4 chr9 11305266 11306054 -112770118 + RLTR13D5 LTR ERVK 1 807 -216 3 671 285 208 19 0 chr9 11306044 11306097 -112770075 + RLTR16 LTR ERVK 452 505 0 3 671 1771 237 61 61 chr9 11306971 11307541 -112768631 - Lx7 LINE L1 0 7696 7127 3 671 716 158 14 76 chr9 11307582 11307726 -112768446 - ORR1B1-int LTR MaLR 0 1963 1829 3 671 31717 93 18 11 chr9 11307726 11313856 -112762316 - L1Md_F2 LINE L1 0 6582 423 3 671 1883 200 37 8 chr9 11313867 11314384 -112761788 - ORR1B1-int LTR MaLR -192 1600 678 3 671 296 327 9 53 chr9 11316803 11316916 -112759256 - PB1D10 SINE Alu -1 116 9 3 671 221 376 10 51 chr9 11316831 11316929 -112759243 - ID_B1 SINE B4 -51 173 80 3 671 850 229 114 123 chr9 11318614 11318938 -112757234 - RLTR11A LTR ERVK -205 323 3 3 671 693 178 86 0 chr9 11318941 11319115 -112757057 - MYSERV16_I-int LTR ERVK -1 2325 2137 3 671 8497 27 1 0 chr9 11319137 11320232 -112755940 - L1Md_A LINE L1 -1 6581 5486 3 671 3489 185 53 11 chr9 11320232 11320827 -112755345 - MYSERV16_I-int LTR ERVK -201 2125 1523 3 671 198 0 0 0 chr9 11320827 11320849 -112755323 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 3 671 3489 185 53 11 chr9 11320849 11321014 -112755158 - MYSERV16_I-int LTR ERVK -804 1522 1333 3 671 2793 157 77 59 chr9 11321034 11321591 -112754581 - Lx2 LINE L1 -1 6996 6430 3 671 677 96 0 0 chr9 11321590 11321684 -112754488 + L1_Mur2 LINE L1 5307 5400 -477 3 671 538 117 0 0 chr9 11321684 11321761 -112754411 - MYSERV16_I-int LTR ERVK -989 1337 1261 3 671 4498 184 37 35 chr9 11321755 11322250 -112753922 - MurERV4_19-int LTR ERVK -2566 3214 2712 3 671 282 29 0 0 chr9 11322250 11322285 -112753887 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 671 4498 184 37 35 chr9 11322285 11322740 -112753432 - MurERV4_19-int LTR ERVK -3069 2711 2262 3 671 283 308 66 40 chr9 11322776 11322928 -112753244 - LTRIS_Mus LTR ERV1 -50 537 382 3 671 5382 168 13 4 chr9 11323374 11324315 -112751857 - MurERV4_19-int LTR ERVK -3532 2248 1300 3 671 2883 194 4 0 chr9 11324293 11324802 -112751370 - MurERV4_19-int LTR ERVK -4770 1010 500 3 671 374 328 71 39 chr9 11324992 11325309 -112750863 + MTE2a LTR MaLR 19 378 -1 3 671 27 62 0 0 chr9 11325576 11325624 -112750548 + AT_rich Low_complexity Low_complexity 1 48 0 3 671 290 111 19 0 chr9 11326751 11326777 -112749395 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 671 366 23 0 0 chr9 11326777 11326820 -112749352 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 671 290 111 19 0 chr9 11326820 11326847 -112749325 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 671 3821 139 0 5 chr9 11327724 11328309 -112747863 - Lx LINE L1 -7 6647 6066 3 671 314 111 11 110 chr9 11328438 11328529 -112747643 + MMVL30-int LTR ERV1 1498 1579 -2119 3 671 208 119 0 45 chr9 11328537 11328581 -112747591 + A-rich Low_complexity Low_complexity 3 44 0 3 671 2673 225 68 63 chr9 11328604 11329499 -112746673 + MMVL30-int LTR ERV1 1759 2230 -1468 3 671 732 23 0 0 chr9 11329499 11329585 -112746587 + (GAA)n Simple_repeat Simple_repeat 2 87 0 3 671 1184 306 115 89 chr9 11329585 11329817 -112746355 + MMVL30-int LTR ERV1 4330 4527 -3029 3 671 441 0 0 0 chr9 11329817 11329866 -112746306 + (TAA)n Simple_repeat Simple_repeat 2 50 0 3 671 3567 204 65 69 chr9 11329866 11330573 -112745599 + MMVL30-int LTR ERV1 2874 3340 -358 3 671 1117 83 0 0 chr9 11330573 11330717 -112745455 - B1_Mus2 SINE Alu -2 145 2 3 671 3567 156 42 59 chr9 11330717 11330976 -112745196 + MMVL30-int LTR ERV1 3341 3602 -96 3 671 20494 139 9 22 chr9 11331596 11334337 -112741835 - L1_Mm LINE L1 -350 5533 2821 3 671 2520 94 75 8 chr9 11334337 11334722 -112741450 - RLTR10A LTR ERVK 0 411 1 3 671 20494 151 9 17 chr9 11334722 11336141 -112740031 - L1_Mm LINE L1 -3063 2820 1402 3 671 1012 254 15 34 chr9 11336141 11336406 -112739766 + ORR1D1 LTR MaLR 113 372 -2 3 671 839 262 26 30 chr9 11336776 11337008 -112739164 - ORR1E LTR MaLR -126 233 3 3 671 230 333 17 9 chr9 11338005 11338120 -112738052 + (TATG)n Simple_repeat Simple_repeat 4 119 0 3 671 243 329 0 0 chr9 11338033 11338106 -112738066 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 671 201 39 0 0 chr9 11338359 11338385 -112737787 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 671 234 363 143 0 chr9 11339299 11339390 -112736782 + B1F1 SINE Alu 5 108 -41 3 671 2044 248 71 61 chr9 11339734 11340327 -112735845 - RMER20B LTR ERVK -22 605 7 3 671 239 220 0 0 chr9 11341121 11341171 -112735001 + ID2 SINE ID 3 52 -31 3 671 24 32 0 0 chr9 11341271 11341302 -112734870 + AT_rich Low_complexity Low_complexity 1 31 0 3 671 6702 63 1 8 chr9 11341983 11343745 -112732427 + L1Md_T LINE L1 295 2139 -3747 3 671 4277 33 0 2 chr9 11343728 11344245 -112731927 + L1Md_T LINE L1 5074 5589 -297 3 671 8410 33 0 1 chr9 11344245 11345242 -112730930 + L1Md_T LINE L1 5590 6585 0 3 671 402 21 0 0 chr9 11345312 11345359 -112730813 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 3 671 259 193 12 12 chr9 11346085 11346169 -112730003 + (CA)n Simple_repeat Simple_repeat 1 84 0 3 671 6783 51 2 3 chr9 11346200 11347047 -112729125 - L1Md_F2 LINE L1 -6 6576 5731 3 671 391 336 8 0 chr9 11347071 11347199 -112728973 + RSINE1 SINE B4 1 129 -36 3 671 387 0 0 0 chr9 11347225 11347268 -112728904 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 671 224 317 136 18 chr9 11347984 11348109 -112728063 - B1F SINE Alu -6 143 6 3 671 16642 158 28 22 chr9 11349966 11353721 -112722451 + L1_Mus3 LINE L1 437 4195 -1688 3 671 288 0 0 0 chr9 11353721 11353753 -112722419 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 671 16642 209 23 165 chr9 11353753 11353870 -112722302 + L1_Mus3 LINE L1 4191 4303 -1577 3 671 924 151 84 6 chr9 11353870 11354037 -112722135 + RLTR13C1 LTR ERVK 1 180 -934 3 671 2310 195 111 12 chr9 11354036 11354596 -112721576 + RLTR13C1 LTR ERVK 369 983 0 3 671 16642 209 23 165 chr9 11354596 11354955 -112721217 + L1_Mus3 LINE L1 4304 4654 -1226 3 671 207 0 0 0 chr9 11354955 11354978 -112721194 + (TAA)n Simple_repeat Simple_repeat 1 23 0 3 671 12729 159 18 96 chr9 11354978 11357068 -112719104 + L1_Mus3 LINE L1 4655 6636 -2 3 671 475 101 52 29 chr9 11358197 11358371 -112717801 + T-rich Low_complexity Low_complexity 3 180 0 3 671 935 50 0 0 chr9 11358371 11358492 -112717680 - B1_Mus1 SINE Alu 0 148 28 3 671 279 285 43 38 chr9 11359367 11359553 -112716619 + L1M4 LINE L1 3775 3961 -2185 4 671 240 117 32 122 chr9 11359891 11360047 -112716125 + (TATATG)n Simple_repeat Simple_repeat 1 142 0 4 671 233 217 17 0 chr9 11360843 11360903 -112715269 + L1M4 LINE L1 4488 4548 -1598 4 671 468 406 6 0 chr9 11361041 11361221 -112714951 + B3A SINE B2 5 185 -13 4 671 515 309 92 32 chr9 11361268 11361616 -112714556 + L1M4 LINE L1 4713 5081 -1065 4 671 613 275 22 22 chr9 11361977 11362111 -112714061 - RSINE1 SINE B4 -13 152 19 4 671 287 127 0 16 chr9 11362622 11362686 -112713486 + (TATG)n Simple_repeat Simple_repeat 4 66 0 4 671 25 51 0 0 chr9 11363009 11363048 -112713124 + AT_rich Low_complexity Low_complexity 1 39 0 4 671 180 0 0 0 chr9 11363365 11363385 -112712787 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 671 288 53 0 0 chr9 11363866 11363904 -112712268 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 671 219 36 0 0 chr9 11364189 11364217 -112711955 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 671 407 312 55 73 chr9 11365000 11365218 -112710954 + B3A SINE B2 3 216 0 4 671 594 325 9 39 chr9 11365248 11365534 -112710638 + Lx9 LINE L1 6662 7050 -594 4 671 32 26 0 0 chr9 11367151 11367190 -112708982 + AT_rich Low_complexity Low_complexity 1 39 0 4 671 1107 256 60 41 chr9 11367244 11367611 -112708561 + Lx9 LINE L1 7021 7394 -250 4 671 1912 142 86 141 chr9 11368125 11368593 -112707579 + RLTR41 LTR ERV1 1 442 -4 4 671 379 187 140 21 chr9 11369161 11369254 -112706918 - PB1D9 SINE Alu -16 104 1 4 671 528 65 0 0 chr9 11369524 11369601 -112706571 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 671 273 57 0 0 chr9 11369601 11369635 -112706537 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 671 29 0 0 0 chr9 11370348 11370377 -112705795 + AT_rich Low_complexity Low_complexity 1 29 0 4 671 252 103 34 17 chr9 11370440 11370499 -112705673 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 4 671 181 317 0 77 chr9 11371106 11371171 -112705001 - MER5A DNA MER1_type -123 66 7 4 671 298 369 30 30 chr9 11371239 11371373 -112704799 - B4A SINE B4 -65 227 94 4 671 456 354 47 28 chr9 11371588 11371800 -112704372 - ID_B1 SINE B4 0 224 9 4 671 506 239 0 134 chr9 11371821 11371985 -112704187 - B1_Mur2 SINE Alu -7 142 1 4 671 544 302 0 76 chr9 11372830 11373027 -112703145 - B3A SINE B2 -16 182 1 4 671 333 284 73 9 chr9 11373269 11373379 -112702793 + RMER20B LTR ERVK 3 119 -508 4 671 561 42 0 0 chr9 11373560 11373632 -112702540 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 671 228 292 65 33 chr9 11373645 11373737 -112702435 + RMER20B LTR ERVK 364 458 -58 4 671 750 187 0 0 chr9 11373969 11374119 -112702053 + CT-rich Low_complexity Low_complexity 4 153 0 4 671 49 46 0 11 chr9 11374127 11374158 -112702014 + AT_rich Low_complexity Low_complexity 1 31 0 4 671 1131 75 7 0 chr9 11374158 11374304 -112701868 + B1_Mus2 SINE Alu 1 147 0 4 671 49 46 0 11 chr9 11374304 11374360 -112701812 + AT_rich Low_complexity Low_complexity 1 56 0 4 671 819 193 106 70 chr9 11374402 11374686 -112701486 - Lx7 LINE L1 -3 7693 7400 4 671 234 235 37 12 chr9 11374864 11374946 -112701226 + CT-rich Low_complexity Low_complexity 1 84 0 4 671 186 133 0 0 chr9 11375087 11375117 -112701055 + (TAA)n Simple_repeat Simple_repeat 2 31 0 4 671 1362 194 138 3 chr9 11375232 11375552 -112700620 - Lx7 LINE L1 -479 7217 6855 4 671 2367 282 75 20 chr9 11375569 11376379 -112699793 - Lx6 LINE L1 -709 6751 5897 4 671 385 279 0 30 chr9 11376373 11376506 -112699666 + Lx6 LINE L1 7323 7451 -9 4 671 2082 76 7 0 chr9 11377230 11377487 -112698685 - MTA_Mm LTR MaLR 0 396 138 4 671 1785 147 53 75 chr9 11377487 11377900 -112698272 + RLTR9F LTR ERVK 1 404 -11 4 671 1206 28 0 0 chr9 11377908 11378053 -112698119 - MTA_Mm LTR MaLR -251 145 1 4 671 430 346 74 21 chr9 11378509 11378698 -112697474 - B4A SINE B4 -68 224 26 4 671 418 347 52 99 chr9 11378724 11379086 -112697086 - L1M2 LINE L1 -2176 3967 3623 4 671 474 350 105 23 chr9 11379406 11380312 -112695860 - L1M2 LINE L1 -3033 3110 2131 4 671 2192 241 52 29 chr9 11380316 11380894 -112695278 - RLTR1 LTR ERV1 -4 620 30 4 671 270 0 0 0 chr9 11383138 11383168 -112693004 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 671 303 261 0 190 chr9 11383948 11384085 -112692087 + MTE2a LTR MaLR 10 120 -259 4 671 2958 259 93 41 chr9 11384230 11384293 -112691879 - Lx7 LINE L1 -314 7382 7329 4 671 840 86 21 0 chr9 11384293 11384433 -112691739 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 4 671 2958 259 93 41 chr9 11384433 11385274 -112690898 - Lx7 LINE L1 -368 7328 6431 4 671 248 322 22 0 chr9 11385303 11385393 -112690779 + MTC LTR MaLR 6 97 -324 4 671 307 355 64 28 chr9 11385584 11386214 -112689958 - L1_Mur3 LINE L1 -881 5262 4580 4 671 1171 95 0 12 chr9 11386229 11386400 -112689772 + B2_Mm2 SINE B2 4 172 -23 4 671 22 0 0 0 chr9 11386507 11386529 -112689643 + AT_rich Low_complexity Low_complexity 1 22 0 4 671 342 414 0 0 chr9 11386671 11386804 -112689368 - RSINE1 SINE B4 -31 134 2 4 671 260 331 46 40 chr9 11387143 11387294 -112688878 + RLTR14 LTR ERV1 231 382 0 4 671 2816 36 100 0 chr9 11388592 11388952 -112687220 - MTA_Mm LTR MaLR 0 396 1 4 671 29 0 0 0 chr9 11389217 11389246 -112686926 + AT_rich Low_complexity Low_complexity 1 29 0 4 671 345 230 370 13 chr9 11389630 11389784 -112686388 + B3 SINE B2 2 210 -6 4 671 223 194 31 41 chr9 11389980 11390077 -112686095 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 671 1113 83 7 0 chr9 11390198 11390343 -112685829 + B1_Mus1 SINE Alu 2 147 -1 4 671 296 276 46 37 chr9 11390695 11390804 -112685368 - MER110A LTR ERV1 -287 181 72 4 671 453 133 0 0 chr9 11392178 11392253 -112683919 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 671 592 242 0 0 chr9 11393821 11393949 -112682223 - Lx4B LINE L1 -1257 5801 5674 4 671 4192 222 84 16 chr9 11393937 11395037 -112681135 + Lx2B LINE L1 5815 6990 -10 4 671 407 274 119 8 chr9 11395203 11395446 -112680726 - Lx9 LINE L1 -2 7642 7373 4 671 928 270 95 33 chr9 11395487 11395824 -112680348 - Lx9 LINE L1 -1012 6632 6275 4 671 24 32 0 0 chr9 11398187 11398218 -112677954 + AT_rich Low_complexity Low_complexity 1 31 0 4 671 180 216 0 0 chr9 11398816 11398853 -112677319 - L3 LINE CR1 -2299 2190 2154 4 671 2597 263 78 24 chr9 11398859 11399035 -112677137 - Lx7 LINE L1 0 7696 7503 4 671 1067 129 6 0 chr9 11399035 11399213 -112676959 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4 671 2597 263 78 24 chr9 11399213 11399281 -112676891 - Lx7 LINE L1 -194 7502 7418 4 671 189 0 0 0 chr9 11399281 11399302 -112676870 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 671 2597 263 78 24 chr9 11399302 11399980 -112676192 - Lx7 LINE L1 -279 7417 6723 4 671 1908 262 155 53 chr9 11399978 11400276 -112675896 - Lx7 LINE L1 -1195 6501 6152 4 671 423 56 0 0 chr9 11400276 11400330 -112675842 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 671 1908 262 155 53 chr9 11400330 11400625 -112675547 - Lx7 LINE L1 -1545 6151 5858 4 671 450 0 0 0 chr9 11400625 11400675 -112675497 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 4 671 2064 228 84 36 chr9 11400675 11400808 -112675364 - Lx7 LINE L1 -1839 5857 5688 4 671 2116 146 14 54 chr9 11400808 11401234 -112674938 + RLTR9E LTR ERVK 1 409 0 4 671 2064 195 16 20 chr9 11401234 11401609 -112674563 - Lx7 LINE L1 -193 5687 5309 4 671 7530 85 16 4 chr9 11401680 11402691 -112673481 - RLTR13D5 LTR ERVK 0 1023 1 4 83 280 239 14 0 chr9 11403258 11403329 -112672843 - Lx7 LINE L1 -1513 6183 6112 4 672 204 330 11 0 chr9 11403618 11403712 -112672460 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 672 204 316 0 0 chr9 11404022 11404117 -112672055 + A-rich Low_complexity Low_complexity 1 95 0 4 672 185 260 13 0 chr9 11404400 11404477 -112671695 + CT-rich Low_complexity Low_complexity 1 78 0 4 672 344 141 0 25 chr9 11405266 11405346 -112670826 + (TCTCTG)n Simple_repeat Simple_repeat 2 79 0 4 672 275 319 98 46 chr9 11406176 11406350 -112669822 + MLT1E1 LTR MaLR 79 261 -366 4 672 23 0 0 0 chr9 11407195 11407218 -112668954 + AT_rich Low_complexity Low_complexity 1 23 0 4 672 316 358 14 14 chr9 11407702 11407841 -112668331 + MLT1E1 LTR MaLR 487 625 -29 4 672 3791 128 10 19 chr9 11407959 11408027 -112668145 + Lx2 LINE L1 6413 6480 -517 4 672 4443 114 102 47 chr9 11408027 11408440 -112667732 - RMER17D LTR ERVK 0 889 466 4 672 721 49 20 0 chr9 11408440 11408542 -112667630 + (GA)n Simple_repeat Simple_repeat 2 105 0 4 672 4443 114 102 47 chr9 11408542 11408971 -112667201 - RMER17D LTR ERVK -424 465 3 4 672 3791 128 10 19 chr9 11408971 11409492 -112666680 + Lx2 LINE L1 6481 6997 0 4 672 347 263 42 0 chr9 11410134 11410229 -112665943 - PB1D10 SINE Alu -17 100 2 4 672 37859 31 0 0 chr9 11410626 11417290 -112658882 - L1Md_T LINE L1 0 6585 1 4 672 186 235 115 19 chr9 11418272 11418324 -112657848 + L2a LINE L2 3370 3426 0 4 672 3973 146 32 70 chr9 11418442 11419024 -112657148 - RMER17D2 LTR ERVK 0 809 244 4 672 3461 23 2 0 chr9 11419024 11419419 -112656753 + MTA_Mm LTR MaLR 1 396 0 4 672 3973 146 32 70 chr9 11419419 11419522 -112656650 - RMER17D2 LTR ERVK -566 243 146 4 672 230 21 85 0 chr9 11419522 11419569 -112656603 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 672 3973 146 32 70 chr9 11419569 11419723 -112656449 - RMER17D2 LTR ERVK -664 145 1 4 672 808 169 448 13 chr9 11420530 11420841 -112655331 - RLTR41 LTR ERV1 0 446 1 4 672 628 283 245 27 chr9 11420919 11421213 -112654959 - RMER20B LTR ERVK -263 364 7 4 672 1298 216 3 69 chr9 11421214 11421502 -112654670 + RMER20B LTR ERVK 2 270 -357 4 672 835 196 55 28 chr9 11421502 11421821 -112654351 - RMER17C LTR ERVK 0 410 1 4 672 1176 209 76 4 chr9 11421834 11422098 -112654074 + RMER20B LTR ERVK 286 568 -59 4 672 428 332 107 44 chr9 11422732 11423003 -112653169 - B4A SINE B4 0 292 5 4 672 587 329 127 31 chr9 11423781 11424491 -112651681 - L1M5 LINE L1 -2751 3395 2618 4 672 255 238 27 8 chr9 11424510 11424604 -112651568 - MLT1A LTR MaLR -37 371 278 4 672 249 83 0 0 chr9 11424776 11424812 -112651360 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 672 1090 133 27 0 chr9 11425099 11425287 -112650885 + Lx3_Mus LINE L1 6802 6994 -15 4 672 239 323 126 43 chr9 11425865 11426214 -112649958 + L1MEc LINE L1 22 399 -6001 4 672 462 119 82 9 chr9 11426452 11426562 -112649610 - L1_Mus4 LINE L1 0 6636 6519 4 672 493 164 25 0 chr9 11426562 11426660 -112649512 + L1_Mus3 LINE L1 6346 6413 -225 4 672 415 347 16 8 chr9 11426662 11426787 -112649385 + RSINE1 SINE B4 11 136 -29 4 672 378 0 0 0 chr9 11426806 11426848 -112649324 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 672 348 130 0 0 chr9 11426848 11426917 -112649255 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 672 820 36 9 18 chr9 11428067 11428180 -112647992 + (TTTTC)n Simple_repeat Simple_repeat 2 113 0 5 672 836 62 0 9 chr9 11428180 11428288 -112647884 - B1_Mus1 SINE Alu -8 140 33 5 672 808 339 48 43 chr9 11428989 11429340 -112646832 - ORR1E LTR MaLR -6 353 1 5 672 192 200 60 12 chr9 11432173 11432340 -112643832 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 5 672 266 0 0 29 chr9 11432343 11432378 -112643794 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 672 378 0 0 0 chr9 11432378 11432419 -112643753 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 672 1547 201 31 71 chr9 11432748 11433129 -112643043 + ORR1C1 LTR MaLR 1 366 -12 5 672 23 33 0 0 chr9 11434832 11434862 -112641310 + AT_rich Low_complexity Low_complexity 1 30 0 5 672 282 73 0 0 chr9 11434976 11435017 -112641155 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 672 45 75 0 0 chr9 11436469 11436563 -112639609 + AT_rich Low_complexity Low_complexity 1 94 0 5 672 24 53 0 0 chr9 11437672 11437710 -112638462 + AT_rich Low_complexity Low_complexity 1 38 0 5 672 414 0 0 0 chr9 11437950 11437996 -112638176 + (TAA)n Simple_repeat Simple_repeat 3 48 0 5 672 373 235 16 71 chr9 11438706 11438889 -112637283 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 5 672 196 265 11 34 chr9 11438941 11439117 -112637055 + (CATA)n Simple_repeat Simple_repeat 1 172 0 5 672 261 0 0 0 chr9 11439090 11439119 -112637053 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 672 354 98 0 0 chr9 11439119 11439170 -112637002 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 672 285 29 0 0 chr9 11439172 11439206 -112636966 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 672 759 299 58 62 chr9 11439674 11439931 -112636241 - MTE2b LTR MaLR -23 356 101 5 672 369 0 0 0 chr9 11440170 11440211 -112635961 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 672 2412 165 18 6 chr9 11440373 11440986 -112635186 + L1VL2 LINE L1 440 1070 -2545 5 672 4282 170 51 19 chr9 11440996 11441853 -112634319 - RLTR13D6 LTR ERVK -8 894 10 5 672 3563 228 6 119 chr9 11441867 11442137 -112634035 + Lx2A1 LINE L1 1384 1642 -4241 5 672 944 87 8 0 chr9 11442137 11442264 -112633908 + B1_Mus1 SINE Alu 9 136 -12 5 672 213 65 0 0 chr9 11442264 11442295 -112633877 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 5 672 4387 169 8 9 chr9 11442295 11443145 -112633027 + Lx2A1 LINE L1 1640 2489 -3394 5 672 5778 175 15 18 chr9 11443161 11444642 -112631530 + Lx2A1 LINE L1 4732 7008 0 5 672 12296 106 13 10 chr9 11446003 11448722 -112627450 + Lx3_Mus LINE L1 4053 6767 -242 5 672 1736 139 12 84 chr9 11448720 11449041 -112627131 - Lx3A LINE L1 -535 6446 6149 5 672 212 137 65 52 chr9 11449314 11449391 -112626781 + (TTTA)n Simple_repeat Simple_repeat 1 78 0 5 672 218 167 37 0 chr9 11449316 11449370 -112626802 + T-rich Low_complexity Low_complexity 3 58 0 5 672 32926 103 12 11 chr9 11449398 11456198 -112619974 - L1Md_F2 LINE L1 -12 6570 98 5 672 26167 137 25 50 chr9 11456177 11462482 -112613690 - L1Md_F2 LINE L1 -41 6525 387 5 672 1658 179 3 63 chr9 11462512 11462863 -112613309 - RMER10B LTR ERVL -68 330 1 5 672 361 307 54 0 chr9 11463523 11463689 -112612483 - Lx8 LINE L1 -510 6963 6789 5 672 3608 68 14 42 chr9 11464870 11465375 -112610797 - L1_Mus2 LINE L1 0 6566 6076 5 672 2417 62 0 0 chr9 11465375 11465682 -112610490 + L1_Mus2 LINE L1 5757 6063 -503 5 672 6450 181 37 6 chr9 11465817 11467436 -112608736 - Lx2B LINE L1 -171 6829 5173 5 672 270 0 0 0 chr9 11467686 11467716 -112608456 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 672 264 30 0 0 chr9 11467757 11467790 -112608382 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 5 672 24 53 0 0 chr9 11468344 11468382 -112607790 + AT_rich Low_complexity Low_complexity 1 38 0 5 672 586 283 93 53 chr9 11470055 11470357 -112605815 + Tigger7 DNA MER2_type 2172 2485 -6 5 672 28 79 0 0 chr9 11470357 11470420 -112605752 + AT_rich Low_complexity Low_complexity 1 63 0 5 672 554 318 94 0 chr9 11470539 11470731 -112605441 - B3 SINE B2 -5 211 2 5 672 339 44 0 0 chr9 11471282 11471327 -112604845 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 672 441 0 0 0 chr9 11471327 11471375 -112604797 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 672 463 345 19 29 chr9 11471650 11471856 -112604316 + B3 SINE B2 1 204 -12 5 672 1386 228 4 0 chr9 11471864 11472145 -112604027 + Lx5 LINE L1 6389 6670 -380 5 672 654 323 135 33 chr9 11472614 11473024 -112603148 - L1MD LINE L1 -3001 3145 2680 5 672 291 28 0 0 chr9 11473024 11473060 -112603112 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 672 654 323 135 33 chr9 11473060 11473263 -112602909 - L1MD LINE L1 -3467 2679 2469 5 672 37101 30 0 0 chr9 11473482 11478646 -112597526 - L1Md_T LINE L1 0 6582 1419 5 672 679 56 11 0 chr9 11478826 11478915 -112597257 + B1_Mm SINE Alu 58 147 0 5 672 250 45 45 0 chr9 11478960 11479004 -112597168 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 5 672 338 60 0 0 chr9 11479527 11479577 -112596595 + RMER17B LTR ERVK 412 461 -497 5 672 243 222 0 14 chr9 11480085 11480158 -112596014 - Lx3A LINE L1 -4 6977 6906 5 672 25 75 0 0 chr9 11480320 11480373 -112595799 + AT_rich Low_complexity Low_complexity 1 53 0 5 672 457 271 24 63 chr9 11480979 11481184 -112594988 + B3A SINE B2 2 198 0 5 672 239 345 37 79 chr9 11482586 11482775 -112593397 - MTEa LTR MaLR -5 374 194 5 672 286 303 0 83 chr9 11482801 11482909 -112593263 - MTEa LTR MaLR -276 103 5 5 672 882 219 72 160 chr9 11483771 11484017 -112592155 - MT2A LTR ERVL -231 302 85 5 672 435 107 0 0 chr9 11484017 11484092 -112592080 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 672 882 219 72 160 chr9 11484092 11484176 -112591996 - MT2A LTR ERVL -449 84 1 5 672 22 0 0 0 chr9 11484471 11484493 -112591679 + AT_rich Low_complexity Low_complexity 1 22 0 5 672 24 0 0 0 chr9 11484898 11484922 -112591250 + AT_rich Low_complexity Low_complexity 1 24 0 5 672 195 203 29 14 chr9 11485441 11485511 -112590661 + GA-rich Low_complexity Low_complexity 2 72 0 5 672 368 216 10 0 chr9 11485540 11485642 -112590530 + GA-rich Low_complexity Low_complexity 2 104 0 5 672 5979 56 9 0 chr9 11487431 11488186 -112587986 - L1Md_F2 LINE L1 -13 6569 5808 5 672 526 278 22 29 chr9 11488779 11488916 -112587256 - B1_Mur1 SINE Alu -1 148 13 5 672 2271 19 86 0 chr9 11488931 11489200 -112586972 - RLTR10B LTR ERVK 0 292 1 5 672 3497 42 0 5 chr9 11489563 11489994 -112586178 + L1Md_F2 LINE L1 6152 6580 -2 5 672 354 45 0 0 chr9 11490083 11490127 -112586045 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 672 4267 98 49 0 chr9 11490468 11491082 -112585090 - L1_Mus3 LINE L1 -6 6632 5989 5 672 1223 212 4 4 chr9 11491100 11491332 -112584840 + RLTR21 LTR ERVK 160 391 -1181 5 672 23497 148 64 18 chr9 11491334 11491928 -112584244 - L1VL1 LINE L1 -49 5834 5233 5 672 400 62 15 15 chr9 11491928 11491993 -112584179 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 672 23497 148 64 18 chr9 11491993 11493731 -112582441 - L1VL1 LINE L1 -651 5232 3483 5 672 234 0 0 0 chr9 11493731 11493757 -112582415 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 5 672 23497 148 64 18 chr9 11493757 11495874 -112580298 - L1VL1 LINE L1 -2401 3482 1181 5 672 1014 102 0 7 chr9 11495874 11496022 -112580150 - B1_Mm SINE Alu 0 147 1 5 672 4503 181 59 26 chr9 11496022 11496762 -112579410 - L1VL1 LINE L1 -5458 1180 412 5 672 396 0 0 0 chr9 11498026 11498070 -112578102 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 672 11510 10 1 1 chr9 11498683 11500000 -112576172 + L1Md_A LINE L1 7 1323 -5401 5 672 37391 5 0 0 chr9 11500000 11504263 -112571909 + L1Md_A LINE L1 1324 5586 -297 1 672 9032 2 0 0 chr9 11504263 11505259 -112570913 + L1Md_A LINE L1 5587 6582 0 1 672 231 36 0 0 chr9 11505444 11505472 -112570700 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 672 585 0 0 0 chr9 11505472 11505536 -112570636 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 672 198 71 0 0 chr9 11507247 11507275 -112568897 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 672 316 385 46 25 chr9 11507333 11507530 -112568642 - B4 SINE B4 -8 284 84 5 672 3489 256 57 42 chr9 11507543 11508545 -112567627 - Lx9 LINE L1 -8 7636 6630 6 672 1816 155 18 6 chr9 11508545 11508876 -112567296 - Lx LINE L1 -2 6652 6318 7 672 3489 256 57 42 chr9 11508876 11509001 -112567171 - Lx9 LINE L1 -1015 6629 6492 6 672 239 269 60 0 chr9 11509011 11509078 -112567094 - B4 SINE B4 -206 86 16 8 672 1851 155 15 6 chr9 11509169 11509500 -112566672 - Lx LINE L1 -3 6651 6318 9 672 429 271 0 0 chr9 11509529 11509625 -112566547 - Lx9 LINE L1 -1057 6587 6492 1 672 239 269 60 0 chr9 11509635 11509702 -112566470 - B4 SINE B4 -206 86 16 1 672 1853 155 15 6 chr9 11509793 11510124 -112566048 - Lx LINE L1 -3 6651 6318 1 672 447 260 0 0 chr9 11510153 11510249 -112565923 - Lx9 LINE L1 -1057 6587 6492 1 672 239 269 60 0 chr9 11510259 11510326 -112565846 - B4 SINE B4 -206 86 16 1 672 1851 155 15 6 chr9 11510417 11510748 -112565424 - Lx LINE L1 -3 6651 6318 1 672 429 271 0 0 chr9 11510777 11510873 -112565299 - Lx9 LINE L1 -1057 6587 6492 1 672 239 269 60 0 chr9 11510883 11510950 -112565222 - B4 SINE B4 -206 86 16 1 672 237 33 0 0 chr9 11511255 11511285 -112564887 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 672 275 171 67 22 chr9 11511293 11511383 -112564789 + (TATAA)n Simple_repeat Simple_repeat 1 94 0 1 672 239 190 66 24 chr9 11511463 11511630 -112564542 + (TA)n Simple_repeat Simple_repeat 2 175 0 2 672 333 0 0 0 chr9 11511651 11511688 -112564484 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 672 180 0 0 0 chr9 11511928 11511948 -112564224 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 2 672 23 0 0 0 chr9 11512831 11512854 -112563318 + AT_rich Low_complexity Low_complexity 1 23 0 2 672 201 39 0 0 chr9 11513418 11513444 -112562728 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 672 812 289 94 59 chr9 11513612 11514038 -112562134 - RLTR45 LTR ERVK 0 482 42 2 672 840 179 21 0 chr9 11514124 11514269 -112561903 - RNERVK23-int LTR ERVK -386 7020 6873 2 672 280 207 0 0 chr9 11514337 11514395 -112561777 - MMETn-int LTR ERVK -689 4155 4098 2 672 3554 58 0 0 chr9 11514428 11514874 -112561298 - L1Md_F2 LINE L1 -14 6568 6123 2 672 2767 47 0 0 chr9 11514875 11515217 -112560955 + L1_Mm LINE L1 4298 4639 -1244 2 672 1117 299 51 30 chr9 11515262 11515874 -112560298 - RNERVK23-int LTR ERVK -456 7761 7279 2 672 532 298 34 62 chr9 11515535 11515921 -112560251 - RLTR6-int LTR ERV1 -247 7531 7157 2 672 682 344 4 0 chr9 11516162 11516421 -112559751 - RLTR45-int LTR ERVK -5652 1592 1333 3 672 315 293 44 51 chr9 11516822 11516980 -112559192 - RLTR6-int LTR ERV1 -1532 6246 6090 2 672 2727 314 62 54 chr9 11517407 11519775 -112556397 - RNERVK23-int LTR ERVK -2510 5707 3319 2 672 348 24 0 0 chr9 11519950 11519991 -112556181 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 672 1331 162 44 8 chr9 11520135 11520384 -112555788 + Lx2 LINE L1 6739 6996 -1 3 672 947 150 0 6 chr9 11521833 11522007 -112554165 + GA-rich Low_complexity Low_complexity 3 175 0 3 672 461 297 21 59 chr9 11522755 11522941 -112553231 + B3A SINE B2 5 183 -15 3 672 237 241 17 0 chr9 11523072 11523130 -112553042 + Lx8 LINE L1 6972 7030 -443 3 672 478 325 61 27 chr9 11523143 11523440 -112552732 + Lx8 LINE L1 7154 7460 -13 3 672 3306 181 15 58 chr9 11523890 11524547 -112551625 - RLTR26 LTR ERVK -13 629 1 3 672 233 39 58 19 chr9 11526615 11526667 -112549505 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 672 370 93 46 11 chr9 11527154 11527241 -112548931 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 672 22 56 0 0 chr9 11528960 11528996 -112547176 + AT_rich Low_complexity Low_complexity 1 36 0 3 672 1014 270 68 35 chr9 11529234 11529572 -112546600 - MTEb LTR MaLR -4 375 27 4 672 541 172 39 15 chr9 11529584 11529843 -112546329 + (TA)n Simple_repeat Simple_repeat 1 265 0 4 672 408 169 0 0 chr9 11530320 11530397 -112545775 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 672 325 128 0 0 chr9 11530397 11530444 -112545728 + HAL1-3A_ME LINE L1 1976 2022 -836 4 672 297 0 0 0 chr9 11531069 11531102 -112545070 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 672 423 0 0 0 chr9 11531631 11531678 -112544494 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 672 207 0 0 0 chr9 11531823 11531846 -112544326 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 672 360 350 132 0 chr9 11531984 11532181 -112543991 + B4 SINE B4 1 223 -69 4 672 1177 222 79 14 chr9 11533299 11533578 -112542594 - Lx5 LINE L1 -3 7047 6751 4 673 436 381 10 41 chr9 11536189 11536479 -112539693 - RMER15 LTR ERVL -16 559 279 4 673 2115 203 81 37 chr9 11537695 11538150 -112538022 + RMER19C LTR ERVK 137 611 0 5 673 425 268 7 27 chr9 11538165 11538311 -112537861 + Lx7 LINE L1 7554 7696 0 5 673 280 222 16 0 chr9 11538629 11538692 -112537480 + B3 SINE B2 87 150 -66 5 673 441 0 0 0 chr9 11538693 11538742 -112537430 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 673 623 62 0 0 chr9 11538795 11538876 -112537296 - B1_Mus2 SINE Alu -8 139 59 5 673 232 179 16 82 chr9 11538822 11538883 -112537289 - MT2B LTR ERVL -337 264 208 5 673 313 309 144 55 chr9 11539000 11539158 -112537014 - Lx8 LINE L1 -1037 6436 6259 5 673 298 0 0 45 chr9 11539158 11539202 -112536970 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 5 673 313 309 144 55 chr9 11539202 11539355 -112536817 - Lx8 LINE L1 -1215 6258 6097 5 673 368 387 53 4 chr9 11539377 11539603 -112536569 + Lx8 LINE L1 6824 7060 -413 5 673 2212 206 54 16 chr9 11539741 11540239 -112535933 + RLTR12B LTR ERVK 1 517 -11 5 673 4628 100 60 1 chr9 11540249 11540921 -112535251 + Lx3_Mus LINE L1 6294 7004 -5 6 673 703 217 153 0 chr9 11542032 11542221 -112533951 + URR1A DNA MER1_type 7 224 -2 6 673 2587 158 30 48 chr9 11542319 11542858 -112533314 - L1_Mm LINE L1 -1095 4788 4260 6 673 27964 109 9 10 chr9 11542857 11545002 -112531170 - L1_Mus2 LINE L1 0 6566 4442 6 673 853 89 73 0 chr9 11545002 11545125 -112531047 - B1_Mus1 SINE Alu -13 135 4 6 673 27964 125 15 18 chr9 11545125 11545363 -112530809 - L1_Mus2 LINE L1 -1442 4441 4197 6 673 198 0 0 0 chr9 11545363 11545385 -112530787 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 673 477 0 0 0 chr9 11545385 11545437 -112530735 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 673 27964 125 15 18 chr9 11545437 11545455 -112530717 - L1_Mus2 LINE L1 -1687 4196 4182 6 673 4838 22 0 2 chr9 11545455 11546011 -112530161 + L1Md_F2 LINE L1 6014 6568 -14 6 673 27964 134 35 17 chr9 11546011 11549683 -112526489 - L1_Mus2 LINE L1 -1702 4181 410 6 673 2484 139 5 5 chr9 11549758 11550170 -112526002 - L1_Mur2 LINE L1 -1609 4268 3857 6 673 4468 135 47 13 chr9 11550170 11550922 -112525250 + Lx LINE L1 5877 6653 -1 6 673 298 327 107 7 chr9 11550933 11551241 -112524931 + L1M5 LINE L1 4360 4698 -1448 7 673 258 203 16 0 chr9 11551511 11551575 -112524597 - Lx7 LINE L1 0 7696 7632 7 673 411 236 11 0 chr9 11551576 11551665 -112524507 - URR1B DNA MER1_type -131 94 5 7 673 259 337 0 35 chr9 11551677 11551763 -112524409 - ID_B1 SINE B4 -65 159 77 7 673 1342 247 52 9 chr9 11553697 11554044 -112522128 - Lx7 LINE L1 -1232 6464 6103 7 673 2290 100 3 6 chr9 11554044 11554377 -112521795 + IAPLTR1a_Mm LTR ERVK 1 332 -5 7 673 3569 61 3 35 chr9 11554377 11555135 -112521037 + IAPEz-int LTR ERVK 6 662 -5819 7 673 939 59 0 0 chr9 11555135 11555254 -112520918 + IAPEz-int LTR ERVK 1359 1477 -5004 7 673 1870 88 12 0 chr9 11555249 11555500 -112520672 + IAPEz-int LTR ERVK 2244 2497 -5183 7 673 14945 45 3 3 chr9 11555518 11557320 -112518852 + IAPEz-int LTR ERVK 4678 6479 -2 7 673 2308 97 3 6 chr9 11557322 11557655 -112518517 + IAPLTR1a_Mm LTR ERVK 1 332 -5 7 673 986 222 19 17 chr9 11557671 11557933 -112518239 - Lx7 LINE L1 -1655 6041 5746 7 673 3301 264 73 61 chr9 11557961 11559175 -112516997 + Lx7 LINE L1 6461 7689 -7 7 673 1425 266 78 88 chr9 11559207 11559834 -112516338 - RMER1C Other Other -9 1333 713 7 673 581 254 107 43 chr9 11559910 11560258 -112515914 - RMER15 LTR ERVL -21 554 61 7 673 839 102 0 8 chr9 11560273 11560402 -112515770 + (TTTTG)n Simple_repeat Simple_repeat 3 130 0 7 673 479 202 29 39 chr9 11560411 11560514 -112515658 - B1_Mur4 SINE Alu -1 149 48 8 673 449 322 135 87 chr9 11561122 11561684 -112514488 + L1M4b LINE L1 872 1460 -5874 8 673 389 335 53 41 chr9 11561698 11562040 -112514132 + Lx7 LINE L1 5832 6177 -1519 8 673 29 28 0 0 chr9 11562539 11562575 -112513597 + AT_rich Low_complexity Low_complexity 1 36 0 8 673 223 200 73 24 chr9 11563660 11563684 -112512488 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 8 673 207 0 0 0 chr9 11563684 11563707 -112512465 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 673 223 200 73 24 chr9 11563707 11563764 -112512408 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 8 673 2885 225 29 39 chr9 11563970 11564697 -112511475 - RMER6D LTR ERVK 0 720 1 8 673 33 0 0 0 chr9 11565018 11565051 -112511121 + AT_rich Low_complexity Low_complexity 1 33 0 8 673 30 0 0 0 chr9 11565123 11565153 -112511019 + AT_rich Low_complexity Low_complexity 1 30 0 8 673 24080 161 16 12 chr9 11565908 11571957 -112504215 + L1_Mus4 LINE L1 559 6630 -6 9 673 564 346 17 17 chr9 11572187 11572419 -112503753 + RMER1C Other Other 522 753 -589 9 673 403 198 64 2 chr9 11572419 11572513 -112503659 - ORR1A2 LTR MaLR -7 367 221 9 673 31006 98 8 11 chr9 11572523 11577886 -112498286 + L1Md_F LINE L1 238 5580 -303 9 673 7464 74 1 5 chr9 11577894 11578880 -112497292 + L1Md_F2 LINE L1 5589 6570 -12 9 673 339 176 0 63 chr9 11578880 11578950 -112497222 - ORR1C1 LTR MaLR -57 321 256 9 673 262 394 62 76 chr9 11579630 11579905 -112496267 - LTR16C LTR ERVL -33 456 186 9 673 216 353 176 0 chr9 11580496 11580615 -112495557 - B1F1 SINE Alu -9 140 1 9 673 23 0 0 0 chr9 11582019 11582042 -112494130 + AT_rich Low_complexity Low_complexity 1 23 0 9 673 549 30 0 0 chr9 11582460 11582527 -112493645 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 9 673 395 162 0 0 chr9 11582527 11582607 -112493565 + GA-rich Low_complexity Low_complexity 94 173 0 1 673 342 329 0 7 chr9 11582615 11582753 -112493419 - B1F SINE Alu -12 137 1 1 673 714 300 53 47 chr9 11583678 11584017 -112492155 + ORR1E LTR MaLR 18 358 -1 1 673 310 224 0 86 chr9 11585972 11586089 -112490083 - Lx LINE L1 -25 7671 7565 1 673 855 89 0 0 chr9 11586284 11586407 -112489765 + L1_Mus1 LINE L1 6445 6567 0 1 673 1090 204 27 0 chr9 11586415 11586635 -112489537 + L1_Mur3 LINE L1 4865 5090 -790 1 673 806 293 5 5 chr9 11586687 11586893 -112489279 + B3 SINE B2 5 210 -6 1 673 192 45 114 0 chr9 11587070 11587114 -112489058 + T-rich Low_complexity Low_complexity 2 50 0 1 673 285 29 0 0 chr9 11587998 11588032 -112488140 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 673 300 241 0 0 chr9 11588032 11588111 -112488061 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 673 21 36 0 0 chr9 11588287 11588315 -112487857 + AT_rich Low_complexity Low_complexity 1 28 0 1 673 514 185 46 40 chr9 11588464 11588616 -112487556 - Lx LINE L1 0 6654 6502 1 673 18716 174 19 29 chr9 11588612 11592507 -112483665 - L1_Mm LINE L1 -291 5592 1736 1 673 6559 80 16 0 chr9 11592507 11593548 -112482624 + L1_Mus1 LINE L1 5486 6632 -6 1 673 1097 259 76 20 chr9 11593719 11594073 -112482099 + ORR1D1 LTR MaLR 1 374 0 1 673 253 323 0 0 chr9 11594604 11594669 -112481503 + ID4 SINE ID 1 65 -18 1 673 1153 75 7 0 chr9 11595355 11595501 -112480671 + B1_Mm SINE Alu 1 147 0 1 673 230 120 20 20 chr9 11595502 11595553 -112480619 + A-rich Low_complexity Low_complexity 3 53 0 1 673 232 207 132 12 chr9 11595560 11595643 -112480529 + L1VL2 LINE L1 93 185 -6150 1 673 15488 122 24 2 chr9 11595647 11598506 -112477666 + L1_Mus2 LINE L1 3296 6224 -342 1 673 1035 215 127 37 chr9 11598509 11598602 -112477570 + ORR1D1 LTR MaLR 41 137 -237 1 673 3693 63 11 2 chr9 11598602 11599101 -112477071 - L1_Mus1 LINE L1 0 6567 6080 1 673 1035 215 127 37 chr9 11599101 11599305 -112476867 + ORR1D1 LTR MaLR 138 365 -9 1 673 21 36 0 0 chr9 11599602 11599630 -112476542 + AT_rich Low_complexity Low_complexity 1 28 0 1 673 550 275 67 30 chr9 11599968 11600133 -112476039 + B3A SINE B2 28 198 0 1 673 3238 70 0 48 chr9 11600982 11601098 -112475074 - L1_Mm LINE L1 -84 5799 5695 1 673 246 62 0 0 chr9 11601098 11601130 -112475042 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 673 1075 88 0 7 chr9 11601139 11601288 -112474884 - B1_Mus1 SINE Alu 0 148 1 1 673 3238 70 0 48 chr9 11601288 11601624 -112474548 - L1_Mm LINE L1 -189 5694 5359 1 673 227 420 10 0 chr9 11602841 11602941 -112473231 + MER45B DNA Tip100 337 437 -603 1 673 850 86 231 32 chr9 11603442 11603598 -112472574 + B2_Mm2 SINE B2 1 187 -8 1 673 765 137 0 0 chr9 11604149 11604280 -112471892 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 673 316 310 0 0 chr9 11604284 11604403 -112471769 + (CATATA)n Simple_repeat Simple_repeat 1 119 0 1 673 1559 89 4 25 chr9 11604647 11604890 -112471282 + Lx LINE L1 6417 6654 0 1 673 240 59 0 0 chr9 11604931 11604965 -112471207 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 673 303 86 0 114 chr9 11604995 11605074 -112471098 - L1_Mus3 LINE L1 -3 6635 6566 1 673 1395 38 0 0 chr9 11605283 11605550 -112470622 + (TG)n Simple_repeat Simple_repeat 1 267 0 1 673 262 262 7 29 chr9 11605669 11605752 -112470420 + CT-rich Low_complexity Low_complexity 1 81 0 1 673 221 175 0 0 chr9 11606075 11606115 -112470057 + (TTTAA)n Simple_repeat Simple_repeat 2 41 0 1 673 3617 205 118 19 chr9 11608681 11608827 -112467345 - L1_Mur3 LINE L1 -1276 4604 4464 1 673 1243 187 139 57 chr9 11608827 11609128 -112467044 - ORR1A3 LTR MaLR 0 326 1 1 673 3617 205 118 19 chr9 11609128 11609705 -112466467 - L1_Mur3 LINE L1 -1417 4463 3797 1 673 375 23 0 0 chr9 11609705 11609749 -112466423 + (TTG)n Simple_repeat Simple_repeat 1 44 0 1 673 3617 205 118 19 chr9 11609749 11609996 -112466176 - L1_Mur3 LINE L1 -2084 3796 3537 1 673 565 177 9 4 chr9 11610016 11610254 -112465918 + CT-rich Low_complexity Low_complexity 1 239 0 1 673 1314 171 34 0 chr9 11610258 11610497 -112465675 - ORR1B1 LTR MaLR -147 247 1 1 673 197 83 28 0 chr9 11610532 11610568 -112465604 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 673 2664 132 20 18 chr9 11610597 11611037 -112465135 + BGLII_B LTR ERVK 1 441 0 1 673 22 35 0 0 chr9 11611150 11611179 -112464993 + AT_rich Low_complexity Low_complexity 1 29 0 1 673 6457 131 28 7 chr9 11611804 11613088 -112463084 + Lx LINE L1 5314 6628 -26 1 673 32843 96 10 10 chr9 11613621 11619772 -112456400 - L1Md_F2 LINE L1 -16 6566 422 1 673 1198 40 7 7 chr9 11619834 11619986 -112456186 - L1Md_F3 LINE L1 -556 6028 5877 1 673 1215 29 0 0 chr9 11619986 11620126 -112456046 + L1Md_F3 LINE L1 6032 6171 -413 1 673 1333 35 6 0 chr9 11620126 11620298 -112455874 + L1Md_F3 LINE L1 6412 6584 0 1 673 280 152 30 0 chr9 11620453 11620519 -112455653 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 673 242 305 138 58 chr9 11621825 11621999 -112454173 - B3 SINE B2 -3 213 26 1 673 31 0 0 0 chr9 11622036 11622067 -112454105 + AT_rich Low_complexity Low_complexity 1 31 0 1 673 330 240 29 0 chr9 11622079 11622183 -112453989 - Lx9 LINE L1 -10 7634 7528 1 673 548 248 101 20 chr9 11622201 11622241 -112453931 + MTC LTR MaLR 1 39 -382 1 673 862 231 108 0 chr9 11622241 11622444 -112453728 - URR1B DNA MER1_type 0 225 1 1 673 548 248 101 20 chr9 11622444 11622551 -112453621 + MTC LTR MaLR 40 160 -261 1 673 7678 245 57 34 chr9 11622801 11625290 -112450882 + Lx6 LINE L1 19 2397 -3483 1 673 183 42 0 0 chr9 11625290 11625314 -112450858 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 673 7678 211 38 53 chr9 11625314 11626347 -112449825 + Lx6 LINE L1 2398 3434 -2446 1 673 3881 221 66 30 chr9 11626343 11627464 -112448708 + Lx6 LINE L1 4542 5702 -178 1 673 273 136 45 0 chr9 11627584 11627650 -112448522 + CT-rich Low_complexity Low_complexity 2 70 0 1 673 1154 271 55 16 chr9 11627701 11628083 -112448089 + Lx6 LINE L1 5729 6125 -1335 1 673 3513 238 61 32 chr9 11628186 11628370 -112447802 + Lx6 LINE L1 6555 6735 -725 1 673 288 0 0 0 chr9 11628370 11628402 -112447770 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 673 3513 238 61 32 chr9 11628402 11628415 -112447757 + Lx6 LINE L1 6736 6737 -723 1 673 684 111 8 16 chr9 11628415 11628543 -112447629 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 673 3513 238 61 32 chr9 11628543 11629224 -112446948 + Lx6 LINE L1 6738 7460 0 1 673 24 77 0 0 chr9 11629439 11629491 -112446681 + AT_rich Low_complexity Low_complexity 1 52 0 1 673 232 210 200 46 chr9 11630165 11630230 -112445942 - B4 SINE B4 -216 76 2 1 673 26 0 0 0 chr9 11632095 11632121 -112444051 + AT_rich Low_complexity Low_complexity 1 26 0 1 673 411 83 0 0 chr9 11632443 11632503 -112443669 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 1 673 2422 105 76 46 chr9 11632503 11632964 -112443208 + IAPLTR2_Mm LTR ERVK 1 475 0 1 673 322 151 0 0 chr9 11632966 11633019 -112443153 + IAPEz-int LTR ERVK 3 55 -1932 1 673 12238 13 32 14 chr9 11633002 11634453 -112441719 + IAPEz-int LTR ERVK 17 1493 -4988 1 673 662 0 0 13 chr9 11634453 11634532 -112441640 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1 673 26 0 0 0 chr9 11635243 11635269 -112440903 + AT_rich Low_complexity Low_complexity 1 26 0 1 673 306 169 0 0 chr9 11635654 11635719 -112440453 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 673 337 88 62 0 chr9 11635719 11635799 -112440373 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 673 21 0 0 0 chr9 11635995 11636016 -112440156 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 22 0 0 0 chr9 11636171 11636193 -112439979 + AT_rich Low_complexity Low_complexity 1 22 0 1 673 754 300 10 21 chr9 11636551 11636745 -112439427 - B3 SINE B2 -24 192 1 1 673 763 80 0 0 chr9 11636848 11636960 -112439212 - L1_Mus1 LINE L1 0 6567 6456 1 673 236 348 92 56 chr9 11637195 11637390 -112438782 - MLT1F LTR MaLR -61 487 286 1 673 2565 208 87 19 chr9 11637424 11637989 -112438183 + RMER20B LTR ERVK 7 609 -18 1 673 26 50 0 0 chr9 11639384 11639424 -112436748 + AT_rich Low_complexity Low_complexity 1 40 0 1 673 21 0 0 0 chr9 11639715 11639736 -112436436 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 199 359 109 24 chr9 11639848 11640059 -112436113 + MIRb SINE MIR 28 256 -12 1 673 872 183 0 11 chr9 11640762 11640944 -112435228 + CT-rich Low_complexity Low_complexity 1 180 0 1 673 707 166 200 6 chr9 11640946 11641116 -112435056 - L1_Mus4 LINE L1 -9 6627 6425 1 673 4447 97 25 3 chr9 11641101 11641742 -112434430 + L1_Mus4 LINE L1 5767 6421 -215 1 673 213 211 0 0 chr9 11642134 11642172 -112434000 + T-rich Low_complexity Low_complexity 5 42 0 1 673 204 40 0 0 chr9 11642518 11642543 -112433629 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 673 408 223 0 0 chr9 11643646 11643749 -112432423 + GA-rich Low_complexity Low_complexity 2 104 0 1 673 222 118 0 0 chr9 11643890 11643924 -112432248 + (A)n Simple_repeat Simple_repeat 1 34 0 1 673 219 152 0 0 chr9 11646477 11646523 -112429649 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 673 340 349 61 0 chr9 11646525 11646657 -112429515 - B1F2 SINE Alu -9 140 1 1 673 234 193 12 35 chr9 11646897 11646983 -112429189 + (TTTA)n Simple_repeat Simple_repeat 4 87 0 1 673 381 93 0 0 chr9 11646989 11647043 -112429129 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 673 1017 186 87 67 chr9 11647043 11647342 -112428830 + Lx7 LINE L1 7392 7696 0 1 673 63 26 0 0 chr9 11647809 11647886 -112428286 + AT_rich Low_complexity Low_complexity 1 77 0 1 673 195 139 0 0 chr9 11648586 11648622 -112427550 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 673 2298 249 37 0 chr9 11648685 11649202 -112426970 - Lx6 LINE L1 0 7460 6925 1 673 242 359 85 15 chr9 11649202 11649332 -112426840 + RLTR25B LTR ERVK 1 139 -889 1 673 608 176 0 16 chr9 11649333 11649460 -112426712 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 1 673 25 51 0 0 chr9 11650317 11650356 -112425816 + AT_rich Low_complexity Low_complexity 1 39 0 1 673 218 233 0 32 chr9 11650431 11650493 -112425679 + GA-rich Low_complexity Low_complexity 4 63 0 1 673 3067 268 47 50 chr9 11650554 11651525 -112424647 - Lx6 LINE L1 -528 6932 5965 1 673 1626 190 33 0 chr9 11651531 11651868 -112424304 + Lx6 LINE L1 5164 5511 -369 1 673 35056 46 2 4 chr9 11652034 11657338 -112418834 + L1Md_T LINE L1 198 5589 -297 1 673 8446 33 0 0 chr9 11657338 11658334 -112417838 + L1Md_T LINE L1 5590 6585 0 1 673 490 345 40 63 chr9 11658353 11658576 -112417596 - RLTR26 LTR ERVK -227 415 198 1 673 1568 214 18 67 chr9 11658746 11659178 -112416994 + Lx6 LINE L1 5506 5920 -1540 1 673 1944 280 16 58 chr9 11659846 11660412 -112415760 + Lx6 LINE L1 6896 7437 -23 1 673 861 178 5 66 chr9 11660414 11660625 -112415547 - L1_Mur3 LINE L1 -1219 4661 4464 1 673 268 175 0 0 chr9 11660643 11660700 -112415472 - L1_Mur3 LINE L1 -1521 4359 4303 1 673 23 33 0 0 chr9 11660735 11660765 -112415407 + AT_rich Low_complexity Low_complexity 1 30 0 1 673 540 0 0 0 chr9 11661050 11661110 -112415062 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 673 367 333 41 34 chr9 11661146 11661292 -112414880 - B4A SINE B4 -23 269 123 2 673 22228 153 14 36 chr9 11661936 11664538 -112411634 + L1_Mus2 LINE L1 239 2833 -3050 2 673 4089 69 44 7 chr9 11664538 11665079 -112411093 + LTRIS2 LTR ERV1 4 564 0 2 84 22228 132 23 3 chr9 11665079 11668088 -112408084 + L1_Mus2 LINE L1 2834 6019 -547 2 674 2445 174 166 18 chr9 11668601 11669160 -112407012 + RLTR26 LTR ERVK 1 642 0 2 674 488 116 0 0 chr9 11669162 11669231 -112406941 - tRNA-Lys-AAG tRNA tRNA 0 76 8 2 674 332 359 9 0 chr9 11669888 11669994 -112406178 + B3A SINE B2 34 140 -58 2 674 402 69 0 0 chr9 11670009 11670067 -112406105 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 674 419 188 0 20 chr9 11670067 11670214 -112405958 + GA-rich Low_complexity Low_complexity 1 144 0 2 674 21 0 0 0 chr9 11670214 11670235 -112405937 + AT_rich Low_complexity Low_complexity 1 21 0 2 674 180 0 0 0 chr9 11671669 11671689 -112404483 + (A)n Simple_repeat Simple_repeat 1 20 0 2 674 619 322 118 49 chr9 11672488 11672955 -112403217 + Lx9 LINE L1 7102 7600 -44 2 674 243 311 0 0 chr9 11673303 11673364 -112402808 + RSINE1 SINE B4 76 136 -29 2 674 397 356 15 8 chr9 11673413 11673543 -112402629 + B4A SINE B4 80 210 -82 2 674 780 50 0 0 chr9 11673692 11673793 -112402379 + (CA)n Simple_repeat Simple_repeat 2 102 0 2 674 536 313 16 6 chr9 11676504 11676687 -112399485 + MTD LTR MaLR 26 210 -209 2 674 268 346 84 118 chr9 11676899 11677102 -112399070 - Tigger7 DNA MER2_type -2218 273 78 2 674 936 277 50 3 chr9 11677374 11677675 -112398497 - Lx6 LINE L1 -1232 6228 5914 2 674 1687 270 175 20 chr9 11677692 11678376 -112397796 + Lx6 LINE L1 6536 7325 -135 2 674 825 208 0 0 chr9 11678530 11678708 -112397464 + GA-rich Low_complexity Low_complexity 2 179 0 2 674 1781 135 71 9 chr9 11678730 11679052 -112397120 + Lx LINE L1 6311 6652 -2 2 674 209 136 0 48 chr9 11679103 11679165 -112397007 + T-rich Low_complexity Low_complexity 1 59 0 2 674 832 243 44 78 chr9 11679613 11679957 -112396215 - RMER17C LTR ERVK -78 332 1 2 674 486 344 58 21 chr9 11680139 11680430 -112395742 - Lx8 LINE L1 -445 7028 6727 2 674 10452 172 80 31 chr9 11680433 11686075 -112390097 - L1_Mus3 LINE L1 0 6638 561 2 674 341 332 98 35 chr9 11686162 11686365 -112389807 - B3A SINE B2 0 216 1 2 674 235 356 79 59 chr9 11686365 11686511 -112389661 + IAPLTR2b LTR ERVK 103 252 -75 2 674 2100 99 20 73 chr9 11687110 11687468 -112388704 - RLTR9D LTR ERVK -64 339 1 2 674 401 0 20 0 chr9 11687560 11687609 -112388563 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 674 277 301 35 35 chr9 11688389 11688475 -112387697 + Lx8 LINE L1 7149 7234 -239 2 674 192 217 0 0 chr9 11688568 11688614 -112387558 + GA-rich Low_complexity Low_complexity 1 46 0 2 674 429 257 75 41 chr9 11690131 11690277 -112385895 - B3 SINE B2 -7 209 59 2 674 321 355 78 52 chr9 11690900 11691093 -112385079 - B3A SINE B2 0 198 1 2 674 1081 76 7 0 chr9 11691524 11691668 -112384504 + B1_Mus2 SINE Alu 1 145 -2 2 674 21 0 0 0 chr9 11692157 11692178 -112383994 + AT_rich Low_complexity Low_complexity 1 21 0 2 674 231 114 0 0 chr9 11692794 11692829 -112383343 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 674 503 330 21 16 chr9 11693402 11693596 -112382576 - RMER15 LTR ERVL -2 573 379 2 674 24 32 0 0 chr9 11693982 11694013 -112382159 + AT_rich Low_complexity Low_complexity 1 31 0 2 674 456 341 29 117 chr9 11694058 11694367 -112381805 + B4 SINE B4 11 292 0 2 674 414 0 0 0 chr9 11694460 11694506 -112381666 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 674 443 344 13 19 chr9 11694522 11694676 -112381496 - B4A SINE B4 -33 259 107 2 674 21327 132 20 22 chr9 11694807 11699359 -112376813 + L1_Mus3 LINE L1 2090 6635 -3 2 674 182 86 0 28 chr9 11699514 11699526 -112376646 + (TG)n Simple_repeat Simple_repeat 1 12 0 2 674 648 38 0 0 chr9 11699526 11699605 -112376567 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 674 182 86 0 28 chr9 11699605 11699628 -112376544 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 674 5306 38 0 0 chr9 11699718 11700349 -112375823 - L1Md_T LINE L1 0 6582 5952 2 674 275 258 15 0 chr9 11700408 11700474 -112375698 + Lx9 LINE L1 7077 7143 -501 2 674 591 237 219 39 chr9 11700479 11700818 -112375354 - RMER1C Other Other -5 1337 938 2 674 238 342 13 0 chr9 11700799 11700878 -112375294 - RMER1C Other Other -711 631 552 2 674 1344 218 111 5 chr9 11700878 11701247 -112374925 - Lx9 LINE L1 -154 7490 7083 2 674 417 20 0 0 chr9 11701362 11701412 -112374760 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 674 603 0 0 0 chr9 11701945 11702012 -112374160 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 2 674 234 274 0 0 chr9 11702171 11702244 -112373928 + Lx6 LINE L1 7385 7457 -3 2 674 752 32 11 0 chr9 11702659 11702754 -112373418 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 674 471 18 0 0 chr9 11703543 11703599 -112372573 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 674 568 373 48 16 chr9 11703920 11704168 -112372004 + B4A SINE B4 37 292 0 2 674 249 33 0 0 chr9 11705644 11705674 -112370498 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 674 21 71 0 0 chr9 11706422 11706464 -112369708 + AT_rich Low_complexity Low_complexity 1 42 0 2 674 4374 31 0 2 chr9 11706886 11707402 -112368770 - L1Md_F2 LINE L1 -1 6581 6067 2 674 1067 36 14 0 chr9 11707416 11707554 -112368618 - B1_Mm SINE Alu 0 147 8 2 674 1488 164 206 13 chr9 11709045 11709429 -112366743 + RMER6B LTR ERVK 1 458 -3 2 674 222 385 128 0 chr9 11709539 11709617 -112366555 + PB1D10 SINE Alu 4 91 -26 2 674 824 336 50 28 chr9 11710649 11711114 -112365058 - RMER5 LTR ERV1 -47 487 13 2 674 360 0 0 0 chr9 11711228 11711268 -112364904 + (TTA)n Simple_repeat Simple_repeat 1 40 0 2 674 553 362 56 29 chr9 11711411 11711892 -112364280 + Lx9 LINE L1 6956 7449 -195 2 674 314 306 56 16 chr9 11711919 11712045 -112364127 + RMER5 LTR ERV1 296 426 -108 2 674 317 317 248 16 chr9 11712800 11712925 -112363247 + RSINE1 SINE B4 11 164 -1 2 674 23 33 0 0 chr9 11712947 11712977 -112363195 + AT_rich Low_complexity Low_complexity 1 30 0 2 674 23 68 0 0 chr9 11713813 11713857 -112362315 + AT_rich Low_complexity Low_complexity 1 44 0 2 674 246 283 10 61 chr9 11714523 11714621 -112361551 + Tigger7 DNA MER2_type 2132 2224 -267 2 674 468 0 0 0 chr9 11714862 11714914 -112361258 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 674 669 58 0 0 chr9 11714942 11715028 -112361144 + (GGGAGA)n Simple_repeat Simple_repeat 3 88 0 2 674 3965 30 4 0 chr9 11715147 11715616 -112360556 + L1_Mus1 LINE L1 6095 6565 -2 2 674 26 0 0 0 chr9 11718131 11718157 -112358015 + AT_rich Low_complexity Low_complexity 1 26 0 2 674 1042 122 12 6 chr9 11718216 11718389 -112357783 + Lx LINE L1 6474 6647 -7 2 674 29 78 0 0 chr9 11718431 11718495 -112357677 + AT_rich Low_complexity Low_complexity 1 64 0 2 674 464 0 18 0 chr9 11718811 11718867 -112357305 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 674 297 0 0 0 chr9 11718867 11718899 -112357273 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 674 1843 232 60 81 chr9 11719139 11719768 -112356404 - RMER17C-int LTR ERVK -2622 616 1 2 674 415 276 37 58 chr9 11719817 11720059 -112356113 - RMER17C LTR ERVK -173 237 1 2 674 21 57 0 0 chr9 11720673 11720708 -112355464 + AT_rich Low_complexity Low_complexity 1 35 0 2 674 192 77 0 0 chr9 11721221 11721247 -112354925 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 674 286 348 65 33 chr9 11721392 11721558 -112354614 + ID_B1 SINE B4 1 175 -117 2 674 35305 36 0 0 chr9 11722529 11727785 -112348387 + L1Md_T LINE L1 237 5589 -297 2 674 8893 9 0 0 chr9 11727785 11728781 -112347391 + L1Md_T LINE L1 5590 6585 0 2 674 21 57 0 0 chr9 11729220 11729255 -112346917 + AT_rich Low_complexity Low_complexity 1 35 0 2 674 677 291 62 113 chr9 11729336 11729476 -112346696 + B4 SINE B4 1 140 -152 2 674 288 0 0 0 chr9 11729476 11729508 -112346664 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 674 677 291 62 113 chr9 11729508 11729642 -112346530 + B4 SINE B4 141 261 -31 2 674 528 16 0 0 chr9 11729650 11729711 -112346461 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 674 26 30 0 0 chr9 11729801 11729834 -112346338 + AT_rich Low_complexity Low_complexity 1 33 0 2 674 362 351 22 44 chr9 11730895 11731077 -112345095 + B3A SINE B2 3 180 -18 2 674 1460 180 51 25 chr9 11731562 11731832 -112344340 + Lx6 LINE L1 5170 5440 -440 2 674 255 31 0 0 chr9 11731832 11731864 -112344308 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 674 1460 180 51 25 chr9 11731864 11731947 -112344225 + Lx6 LINE L1 5441 5531 -349 2 674 833 204 58 0 chr9 11731950 11732122 -112344050 + RMER6C LTR ERVK 3 184 -506 2 674 5116 136 8 1 chr9 11732129 11732963 -112343209 - L1_Mus2 LINE L1 -1188 4695 3856 2 674 7367 124 67 26 chr9 11732976 11734774 -112341398 + L1_Mus2 LINE L1 4712 6565 -1 2 674 1176 215 44 59 chr9 11734886 11735382 -112340790 + RMER6C LTR ERVK 170 614 -76 2 674 230 0 33 0 chr9 11735382 11735412 -112340760 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 674 1176 195 42 76 chr9 11735412 11735464 -112340708 + RMER6C LTR ERVK 615 663 -27 2 674 232 281 78 0 chr9 11735470 11735534 -112340638 + Lx6 LINE L1 5527 5595 -285 2 674 6464 132 35 7 chr9 11735520 11736682 -112339490 + Lx LINE L1 5453 6648 -6 2 674 195 129 0 0 chr9 11736697 11736728 -112339444 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 674 1126 91 5 10 chr9 11736728 11736929 -112339243 + (GAAA)n Simple_repeat Simple_repeat 1 200 0 2 674 3518 262 194 15 chr9 11736941 11736960 -112339212 + Lx6 LINE L1 5587 5605 -2091 2 674 1131 6 0 123 chr9 11736960 11737163 -112339009 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 674 4663 262 180 15 chr9 11737163 11738639 -112337533 + Lx6 LINE L1 5606 7323 -137 2 674 7056 90 30 15 chr9 11738639 11739647 -112336525 - RLTR13D5 LTR ERVK 0 1023 1 2 674 4663 264 93 17 chr9 11739647 11739776 -112336396 + Lx6 LINE L1 7324 7448 -12 2 674 4232 59 33 2 chr9 11740653 11741194 -112334978 - L1_Mus1 LINE L1 -2 6565 6008 2 674 293 355 119 20 chr9 11741368 11741569 -112334603 + ID_B1 SINE B4 4 224 0 2 674 988 206 0 15 chr9 11742240 11742442 -112333730 - URR1A DNA MER1_type -1 225 27 3 674 204 163 0 0 chr9 11743066 11743109 -112333063 + A-rich Low_complexity Low_complexity 1 43 0 3 674 742 204 74 12 chr9 11744101 11744359 -112331813 - RLTR42-int LTR ERVK -3380 2142 1869 3 674 2430 128 7 34 chr9 11744490 11744507 -112331665 - Lx LINE L1 -3 6651 6640 3 674 183 80 0 0 chr9 11744507 11744532 -112331640 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 674 2430 128 7 34 chr9 11744532 11744643 -112331529 - Lx LINE L1 -15 6639 6535 3 674 2519 125 23 3 chr9 11744643 11745035 -112331137 + MTB LTR MaLR 1 400 0 3 674 2430 128 7 34 chr9 11745035 11745316 -112330856 - Lx LINE L1 -120 6534 6252 3 674 1718 195 51 56 chr9 11745316 11745691 -112330481 - RLTR41 LTR ERV1 0 446 74 3 674 8198 36 1 0 chr9 11745695 11746666 -112329506 - L1Md_T LINE L1 -3 6579 5608 3 674 3752 23 0 0 chr9 11746648 11747088 -112329084 + L1_Mm LINE L1 3375 3814 -2069 3 674 434 158 24 0 chr9 11747088 11747170 -112329002 - RLTR41 LTR ERV1 -362 84 1 3 674 1513 241 22 38 chr9 11747505 11747954 -112328218 - RLTR42-int LTR ERVK -3976 1546 1105 3 674 282 160 0 0 chr9 11748135 11748185 -112327987 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 674 1791 200 26 11 chr9 11748446 11749010 -112327162 - RLTR33 LTR ERVK -68 610 1 3 674 403 341 83 50 chr9 11749651 11750012 -112326160 + MLT2D LTR ERVL 1 373 -24 3 674 1991 191 23 16 chr9 11750019 11750407 -112325765 - RMER6B LTR ERVK 0 461 71 3 674 1058 306 41 24 chr9 11750657 11750952 -112325220 + MTEb LTR MaLR 3 302 -77 3 674 761 270 34 10 chr9 11750952 11751158 -112325014 + B3 SINE B2 6 216 0 3 674 278 233 13 76 chr9 11751155 11751234 -112324938 + MTEb LTR MaLR 306 379 0 3 674 37 0 0 0 chr9 11751237 11751274 -112324898 + AT_rich Low_complexity Low_complexity 1 37 0 3 674 827 54 18 0 chr9 11751604 11751716 -112324456 + (TTTC)n Simple_repeat Simple_repeat 2 115 0 3 674 994 116 0 0 chr9 11751716 11751854 -112324318 - B1_Mus1 SINE Alu -10 138 1 3 674 21 0 0 0 chr9 11752036 11752057 -112324115 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 242 29 29 0 chr9 11752897 11752932 -112323240 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 3 674 243 330 0 0 chr9 11754064 11754155 -112322017 + L1MA4 LINE L1 5834 5924 -376 3 674 264 238 131 0 chr9 11754499 11754583 -112321589 + PB1 SINE Alu 26 120 -7 3 674 741 200 0 7 chr9 11754693 11754834 -112321338 + B1_Mus1 SINE Alu 1 140 -8 3 674 239 299 11 65 chr9 11755153 11755246 -112320926 - ID_B1 SINE B4 -7 217 130 3 674 231 136 0 83 chr9 11756291 11756306 -112319866 + MT2B2 LTR ERVL 155 165 -419 3 674 305 140 20 0 chr9 11756306 11756356 -112319816 + B1_Mus2 SINE Alu 2 52 -95 3 674 283 213 16 16 chr9 11756307 11756369 -112319803 + ID_B1 SINE B4 84 145 -79 3 674 917 230 74 112 chr9 11756481 11756850 -112319322 + L1_Mur2 LINE L1 1237 1621 -4259 3 674 483 84 21 10 chr9 11756850 11756946 -112319226 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 674 917 230 74 112 chr9 11756946 11757130 -112319042 + L1_Mur2 LINE L1 1622 1769 -4111 3 674 31960 82 4 7 chr9 11757139 11762293 -112313879 + L1Md_F2 LINE L1 1426 6558 -24 3 674 3538 256 7 31 chr9 11762343 11763211 -112312961 + RodERV21-int LTR ERV1 1876 2722 -2269 3 674 586 335 28 44 chr9 11763325 11763822 -112312350 + RodERV21-int LTR ERV1 3586 4074 -3017 3 674 3174 343 35 33 chr9 11764089 11765855 -112310317 + RodERV21-int LTR ERV1 3025 4793 -198 3 674 183 229 40 40 chr9 11765902 11765952 -112310220 + L3 LINE CR1 3428 3477 -1012 3 674 5226 164 42 28 chr9 11766357 11767464 -112308708 + L1_Mur3 LINE L1 3167 4288 -1592 3 674 2055 158 0 0 chr9 11767474 11767815 -112308357 + L1_Mm LINE L1 5032 5372 -511 3 674 3329 195 21 22 chr9 11767809 11768120 -112308052 + L1_Mur2 LINE L1 1757 2060 -3817 3 674 210 91 0 0 chr9 11768120 11768153 -112308019 + (CCA)n Simple_repeat Simple_repeat 3 35 0 3 674 3329 195 21 22 chr9 11768153 11768354 -112307818 + L1_Mur2 LINE L1 2061 2259 -3618 3 674 786 109 0 0 chr9 11768354 11768473 -112307699 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 3 674 3329 195 21 22 chr9 11768473 11768718 -112307454 + L1_Mur2 LINE L1 2260 2513 -3364 3 674 2362 195 17 155 chr9 11768726 11768867 -112307305 + L1_Mur2 LINE L1 2969 3059 -2818 3 674 933 76 0 0 chr9 11768867 11768998 -112307174 + (GAA)n Simple_repeat Simple_repeat 3 133 0 3 674 2362 195 17 155 chr9 11768998 11769732 -112306440 + L1_Mur2 LINE L1 3060 3723 -2154 3 674 1701 164 0 4 chr9 11769734 11770003 -112306169 + L1VL2 LINE L1 65 332 -6003 3 674 9884 178 118 34 chr9 11770000 11772832 -112303340 + Lx5 LINE L1 1592 4919 -2131 3 674 1020 92 0 0 chr9 11772832 11772974 -112303198 + B1_Mm SINE Alu 6 147 0 3 674 9884 178 118 34 chr9 11772974 11774358 -112301814 + Lx5 LINE L1 4920 6547 -503 3 674 1522 240 31 31 chr9 11774361 11774718 -112301454 + Lx5 LINE L1 6675 7031 -19 3 674 218 32 0 31 chr9 11774718 11774750 -112301422 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 3 674 390 57 0 0 chr9 11775782 11775835 -112300337 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 674 553 310 35 13 chr9 11775861 11776090 -112300082 - Lx7 LINE L1 -591 7105 6872 3 674 440 311 63 50 chr9 11776574 11776733 -112299439 - B3 SINE B2 -36 180 20 3 674 543 31 0 0 chr9 11777651 11777716 -112298456 + (GAA)n Simple_repeat Simple_repeat 1 65 0 3 674 1087 112 6 6 chr9 11777716 11777896 -112298276 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 674 483 63 0 0 chr9 11777907 11777970 -112298202 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 3 674 345 175 0 12 chr9 11777971 11778052 -112298120 + L1_Mus2 LINE L1 6487 6566 0 3 674 522 0 0 0 chr9 11778057 11778115 -112298057 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 3 674 1521 154 72 15 chr9 11778241 11778504 -112297668 + ORR1A2 LTR MaLR 46 323 -4 3 674 320 306 48 101 chr9 11778784 11778973 -112297199 + B3A SINE B2 2 180 -18 3 674 22 56 0 0 chr9 11779212 11779248 -112296924 + AT_rich Low_complexity Low_complexity 1 36 0 3 674 1416 193 116 62 chr9 11779322 11779692 -112296480 + ORR1B1 LTR MaLR 1 390 -4 3 674 1410 215 5 84 chr9 11779884 11780290 -112295882 - L1_Mur2 LINE L1 -706 5171 4798 3 674 5946 148 41 1 chr9 11780289 11780922 -112295250 + Lx LINE L1 5216 5876 -778 3 674 260 70 0 23 chr9 11780922 11780966 -112295206 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 674 5946 138 38 2 chr9 11780966 11781701 -112294471 + Lx LINE L1 5877 6648 -6 3 674 4636 33 0 0 chr9 11781709 11782249 -112293923 + L1Md_T LINE L1 6043 6582 0 3 674 311 0 0 25 chr9 11782416 11782456 -112293716 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 674 270 243 0 28 chr9 11782530 11782602 -112293570 - ID4_ SINE ID -3 80 11 3 674 815 267 68 9 chr9 11783413 11783618 -112292554 + L1_Mur3 LINE L1 888 1093 -6635 3 674 351 0 0 0 chr9 11783618 11783657 -112292515 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 674 1470 217 42 44 chr9 11783657 11784354 -112291818 + L1_Mur3 LINE L1 1046 1734 -4146 3 674 16932 188 7 22 chr9 11784356 11784919 -112291253 + L1VL4 LINE L1 728 1284 -5373 3 674 206 0 69 0 chr9 11784919 11784948 -112291224 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 674 16932 175 18 39 chr9 11784948 11788772 -112287400 + L1VL4 LINE L1 1285 5027 -856 3 674 19919 108 14 14 chr9 11788771 11792079 -112284093 + L1Md_F2 LINE L1 184 3488 -2395 3 674 266 0 29 0 chr9 11792079 11792113 -112284059 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 674 19919 95 5 12 chr9 11792113 11792943 -112283229 + L1Md_F2 LINE L1 3489 4316 -1567 3 674 2978 11 42 3 chr9 11792943 11793296 -112282876 + IAPLTR1_Mm LTR ERVK 1 367 0 3 674 953 86 159 0 chr9 11793296 11793459 -112282713 + IAPEz-int LTR ERVK 8 196 -6285 3 674 6835 76 121 31 chr9 11793430 11794625 -112281547 + IAPEz-int LTR ERVK 67 1313 -5168 3 84 27722 17 1 2 chr9 11794624 11797900 -112278272 + IAPEz-int LTR ERVK 3210 6481 0 3 675 2978 11 42 3 chr9 11797900 11798253 -112277919 + IAPLTR1_Mm LTR ERVK 1 367 0 3 675 8354 82 22 15 chr9 11798253 11799518 -112276654 + L1Md_F2 LINE L1 4311 5584 -299 3 675 7379 77 1 7 chr9 11799520 11800510 -112275662 + L1Md_F2 LINE L1 5587 6570 -12 3 675 3222 182 12 5 chr9 11800539 11801201 -112274971 + L1VL4 LINE L1 5043 5709 -174 3 675 11993 194 29 8 chr9 11801201 11802256 -112273916 - L1VL4 LINE L1 -1687 4199 3146 3 675 588 29 0 0 chr9 11802256 11802326 -112273846 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 675 11993 194 29 8 chr9 11802326 11802606 -112273566 - L1VL4 LINE L1 -2741 3145 2845 3 675 216 0 0 0 chr9 11802606 11802630 -112273542 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 675 11993 208 69 16 chr9 11802630 11804507 -112271665 - L1VL4 LINE L1 -3042 2844 861 3 675 216 0 0 0 chr9 11804922 11804946 -112271226 + (T)n Simple_repeat Simple_repeat 1 24 0 3 675 8711 214 49 80 chr9 11804946 11807372 -112268800 + L1_Mur2 LINE L1 2412 4725 -1152 3 675 378 0 0 0 chr9 11807372 11807414 -112268758 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 3 675 8711 214 49 80 chr9 11807414 11807952 -112268220 + L1_Mur2 LINE L1 4726 5284 -593 3 675 956 123 0 0 chr9 11807956 11808094 -112268078 + B1_Mm SINE Alu 9 146 -1 3 675 1298 53 4 0 chr9 11808094 11808341 -112267831 + (GAAA)n Simple_repeat Simple_repeat 1 248 0 3 675 1412 270 153 17 chr9 11808342 11808923 -112267249 + Lx6 LINE L1 6774 7433 -27 3 675 264 213 0 0 chr9 11808957 11809018 -112267154 + GA-rich Low_complexity Low_complexity 1 61 0 3 675 28 29 0 0 chr9 11809144 11809179 -112266993 + AT_rich Low_complexity Low_complexity 1 35 0 3 675 206 292 53 53 chr9 11809559 11809653 -112266519 + MIRc SINE MIR 164 257 -11 3 675 524 302 82 87 chr9 11810070 11810266 -112265906 - B3A SINE B2 -18 198 4 3 675 31 58 0 0 chr9 11810269 11810321 -112265851 + AT_rich Low_complexity Low_complexity 1 52 0 3 675 240 167 0 0 chr9 11810380 11810428 -112265744 + CT-rich Low_complexity Low_complexity 3 50 0 3 675 482 160 57 34 chr9 11810428 11810603 -112265569 - RMER17C LTR ERVK -135 275 97 3 675 387 0 0 0 chr9 11811142 11811185 -112264987 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 675 607 237 44 0 chr9 11811393 11811528 -112264644 - B1_Mur4 SINE Alu -1 149 9 3 675 1976 150 34 48 chr9 11811553 11811911 -112264261 - Lx LINE L1 -4 6650 6298 3 675 1899 139 244 30 chr9 11812047 11812514 -112263658 + RLTR6_Mm LTR ERV1 37 603 -51 3 675 24579 33 28 0 chr9 11812516 11815644 -112260528 + RLTR6-int LTR ERV1 3 3217 -4561 3 675 4355 25 4 0 chr9 11815642 11816167 -112260005 + RLTR6-int LTR ERV1 4922 5448 -2330 3 675 1891 99 31 22 chr9 11816167 11816486 -112259686 + RLTRETN_Mm LTR ERVK 1 322 0 3 675 13826 24 1 1 chr9 11816486 11818146 -112258026 + ETnERV2-int LTR ERVK 1 1660 -1654 3 675 16971 166 32 24 chr9 11818380 11823312 -112252860 + ETnERV2-int LTR ERVK 1791 7208 -198 3 675 1841 109 31 22 chr9 11823312 11823631 -112252541 + RLTRETN_Mm LTR ERVK 1 322 0 3 675 18746 43 0 0 chr9 11823631 11825967 -112250205 + RLTR6-int LTR ERV1 5443 7778 0 3 675 1902 128 252 31 chr9 11826107 11826559 -112249613 + RLTR6_Mm LTR ERV1 37 588 -66 3 675 4354 121 16 1 chr9 11826559 11827253 -112248919 - Lx LINE L1 -353 6301 5598 3 675 900 74 0 0 chr9 11827561 11827682 -112248490 + (TTTC)n Simple_repeat Simple_repeat 4 124 0 3 675 301 256 38 46 chr9 11827682 11827813 -112248359 - Lx6 LINE L1 -44 7416 7287 3 675 22 70 0 0 chr9 11827901 11827944 -112248228 + AT_rich Low_complexity Low_complexity 1 43 0 3 675 3041 64 13 3 chr9 11829186 11829578 -112246594 + MTA_Mm LTR MaLR 1 396 0 3 675 5334 146 51 12 chr9 11829578 11830538 -112245634 + MTA_Mm-int LTR MaLR 3 999 -259 3 675 302 0 0 0 chr9 11830534 11830569 -112245603 + MTB LTR MaLR 366 400 0 3 675 719 206 6 0 chr9 11830590 11830760 -112245412 + GA-rich Low_complexity Low_complexity 2 172 0 3 675 1129 101 0 17 chr9 11830760 11830941 -112245231 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 3 675 258 136 0 0 chr9 11831811 11831855 -112244317 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 675 293 353 0 29 chr9 11833745 11833850 -112242322 + MTD LTR MaLR 18 119 -300 3 675 20439 180 21 15 chr9 11833853 11837354 -112238818 - L1Md_A LINE L1 -3 6651 3140 4 675 387 0 0 0 chr9 11837354 11837397 -112238775 + (TTG)n Simple_repeat Simple_repeat 3 45 0 4 675 20439 193 21 21 chr9 11837397 11839184 -112236988 - L1Md_A LINE L1 -2744 3139 1342 4 675 39595 21 1 6 chr9 11839163 11845519 -112230653 - L1Md_A LINE L1 -1 6581 260 4 675 5102 141 13 13 chr9 11845520 11845935 -112230237 - L1VL2 LINE L1 -2448 1167 754 4 675 1055 88 0 39 chr9 11845935 11846088 -112230084 + B1_Mm SINE Alu 1 147 0 4 675 5102 169 28 36 chr9 11846088 11846588 -112229584 - L1VL2 LINE L1 -5582 753 278 4 675 4931 166 43 60 chr9 11846588 11847562 -112228610 + RMER17B LTR ERVK 1 958 0 4 675 5102 169 28 36 chr9 11847562 11847752 -112228420 - L1VL2 LINE L1 -6058 277 69 4 675 582 314 177 18 chr9 11847752 11848028 -112228144 + MTD LTR MaLR 100 419 0 3 675 299 330 19 57 chr9 11848067 11848173 -112227999 + RSINE1 SINE B4 3 104 -61 4 675 317 211 26 0 chr9 11848646 11848722 -112227450 - RMER17A2 LTR ERVK -3 903 826 4 675 2799 196 129 21 chr9 11849117 11849869 -112226303 - RMER17A2 LTR ERVK -73 833 1 4 675 252 0 0 0 chr9 11851101 11851129 -112225043 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 675 1103 178 110 125 chr9 11853269 11853668 -112222504 + RLTR9C LTR ERVK 1 393 0 4 675 10263 153 9 10 chr9 11853670 11855252 -112220920 + ETnERV2-int LTR ERVK 3 1583 -1731 4 675 3002 59 201 2 chr9 11855252 11855679 -112220493 - RLTR1B LTR ERV1 0 512 1 4 675 15791 198 28 24 chr9 11855679 11859672 -112216500 + ETnERV2-int LTR ERVK 1457 6227 -1179 4 675 992 194 27 5 chr9 11859714 11859901 -112216271 + ETnERV2-int LTR ERVK 6232 6422 -984 4 675 385 173 0 0 chr9 11860117 11860192 -112215980 + ETnERV2-int LTR ERVK 7331 7405 -1 4 675 1111 209 75 90 chr9 11860192 11860591 -112215581 + RLTR9C LTR ERVK 1 393 0 4 675 252 17 81 32 chr9 11861012 11861074 -112215098 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 4 675 216 86 0 0 chr9 11861094 11861129 -112215043 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 675 1386 211 122 9 chr9 11861889 11862234 -112213938 - ORR1C2 LTR MaLR 0 384 1 4 675 4878 112 3 1 chr9 11862826 11863577 -112212595 + L1_Mm LINE L1 1555 2306 -3577 4 675 2587 133 0 2 chr9 11863575 11863989 -112212183 + L1_Mm LINE L1 2505 2917 -2966 4 675 934 176 37 0 chr9 11863989 11864176 -112211996 - RMER17D2 LTR ERVK 0 809 616 4 675 188 67 33 0 chr9 11864349 11864379 -112211793 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 4 675 237 197 0 0 chr9 11864418 11864484 -112211688 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 675 255 338 0 56 chr9 11864485 11864557 -112211615 - RSINE1 SINE B4 0 165 98 4 675 24 53 0 0 chr9 11864937 11864975 -112211197 + AT_rich Low_complexity Low_complexity 1 38 0 4 675 35 71 0 0 chr9 11865101 11865171 -112211001 + AT_rich Low_complexity Low_complexity 1 70 0 4 675 699 252 180 4 chr9 11865326 11865565 -112210607 - Lx5 LINE L1 0 7050 6770 4 675 1075 239 8 23 chr9 11865565 11865830 -112210342 - Lx4B LINE L1 -335 6723 6463 4 675 1562 253 27 44 chr9 11866201 11866722 -112209450 - RMER20A LTR ERVK -399 461 1 4 675 1398 249 7 7 chr9 11866722 11867029 -112209143 - Lx5 LINE L1 -606 6444 6138 4 675 273 225 0 63 chr9 11867022 11867117 -112209055 + L1_Mur2 LINE L1 1975 2063 -3814 4 675 2638 224 35 8 chr9 11867151 11868131 -112208041 - L1_Mur2 LINE L1 -3992 1885 882 4 675 479 138 9 18 chr9 11868306 11868485 -112207687 - L1_Mus4 LINE L1 0 6636 6527 4 675 2226 121 3 15 chr9 11868485 11868828 -112207344 + L1_Mm LINE L1 5376 5714 -169 4 675 293 271 113 30 chr9 11869896 11870029 -112206143 - MIRc SINE MIR -50 218 75 4 675 293 358 77 12 chr9 11870633 11870958 -112205214 - L1MD1 LINE L1 -314 5928 5583 4 675 244 231 46 0 chr9 11871072 11871180 -112204992 + (TA)n Simple_repeat Simple_repeat 2 114 0 4 675 25 83 0 0 chr9 11871275 11871335 -112204837 + AT_rich Low_complexity Low_complexity 1 60 0 4 675 323 23 23 0 chr9 11871534 11871578 -112204594 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 4 675 534 243 51 7 chr9 11872060 11872197 -112203975 + B1_Mus1 SINE Alu 5 147 -1 4 675 340 331 60 51 chr9 11872325 11872793 -112203379 - L1MD1 LINE L1 -1755 4391 3920 4 675 1034 155 10 35 chr9 11873135 11873335 -112202837 - B2_Mm2 SINE B2 0 195 1 4 675 793 118 105 7 chr9 11874391 11874544 -112201628 - Lx3C LINE L1 -1 6975 6808 4 675 1836 265 9 16 chr9 11874709 11875158 -112201014 - Lx6 LINE L1 -2 7458 7013 4 675 21 0 0 0 chr9 11875179 11875200 -112200972 + AT_rich Low_complexity Low_complexity 1 21 0 4 675 1292 176 8 4 chr9 11875200 11875457 -112200715 - Lx2 LINE L1 -1 6996 6739 4 675 687 148 220 7 chr9 11875457 11875607 -112200565 + Lx2 LINE L1 6815 6996 -1 4 675 240 317 58 0 chr9 11875727 11875831 -112200341 + MER2 DNA MER2_type 98 207 -138 4 675 464 211 14 24 chr9 11876058 11876358 -112199814 + (TA)n Simple_repeat Simple_repeat 1 296 0 4 675 365 296 0 0 chr9 11876358 11876446 -112199726 - B1_Mur3 SINE Alu 0 149 62 4 675 24 0 0 0 chr9 11876574 11876598 -112199574 + AT_rich Low_complexity Low_complexity 1 24 0 4 675 315 235 0 0 chr9 11876873 11876924 -112199248 - PB1D9 SINE Alu -61 59 9 4 675 27 0 0 0 chr9 11877051 11877078 -112199094 + AT_rich Low_complexity Low_complexity 1 27 0 4 675 1149 62 0 7 chr9 11877680 11877826 -112198346 + B1_Mus1 SINE Alu 3 147 -1 4 675 477 0 0 0 chr9 11877828 11877881 -112198291 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 675 488 250 40 11 chr9 11878000 11878176 -112197996 - B3A SINE B2 0 195 9 4 675 24 0 0 0 chr9 11878407 11878431 -112197741 + AT_rich Low_complexity Low_complexity 1 24 0 4 675 507 45 0 0 chr9 11878493 11878559 -112197613 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 675 21 36 0 0 chr9 11878902 11878930 -112197242 + AT_rich Low_complexity Low_complexity 1 28 0 4 675 422 239 134 16 chr9 11879120 11879307 -112196865 - B3 SINE B2 -6 210 2 4 675 758 224 31 9 chr9 11879507 11879738 -112196434 - MTC LTR MaLR -222 199 68 4 675 216 0 0 0 chr9 11879765 11879789 -112196383 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 675 837 95 92 38 chr9 11879789 11879920 -112196252 - B1_Mus1 SINE Alu -10 138 1 4 675 7299 60 20 2 chr9 11879951 11880893 -112195279 - L1_Mus1 LINE L1 -6 6561 5603 4 675 433 215 0 0 chr9 11880893 11880972 -112195200 - MTC LTR MaLR -338 83 5 4 675 310 274 132 104 chr9 11882943 11883192 -112192980 - RMER2 LTR ERV1 -24 543 288 4 675 498 233 0 41 chr9 11883250 11883371 -112192801 - RMER2 LTR ERV1 -451 116 1 4 675 23 0 0 0 chr9 11883441 11883464 -112192708 + AT_rich Low_complexity Low_complexity 1 23 0 4 675 22 0 0 0 chr9 11884222 11884244 -112191928 + AT_rich Low_complexity Low_complexity 1 22 0 4 675 272 283 82 0 chr9 11885228 11885387 -112190785 - L1M2 LINE L1 -2152 3991 3820 4 675 987 283 56 2 chr9 11885725 11886031 -112190141 - RMER1C Other Other -378 964 665 4 675 1393 217 11 0 chr9 11886034 11886310 -112189862 - ORR1B1 LTR MaLR -115 279 1 4 675 2503 218 67 50 chr9 11886310 11887178 -112188994 - ORR1B1-int LTR MaLR 0 1509 642 4 675 321 359 20 27 chr9 11887182 11887331 -112188841 + B3 SINE B2 37 184 -32 4 675 585 42 0 0 chr9 11887689 11887761 -112188411 + (GGGA)n Simple_repeat Simple_repeat 3 74 0 4 675 243 0 0 0 chr9 11888029 11888056 -112188116 + (T)n Simple_repeat Simple_repeat 1 27 0 4 675 531 0 0 0 chr9 11889203 11889262 -112186910 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 675 3360 35 0 0 chr9 11890166 11890562 -112185610 - L1Md_T LINE L1 -386 6196 5801 4 675 3043 43 0 0 chr9 11890562 11890935 -112185237 + L1Md_T LINE L1 6210 6582 0 4 675 261 186 0 0 chr9 11891803 11891873 -112184299 + CT-rich Low_complexity Low_complexity 2 71 0 4 675 222 412 33 8 chr9 11891971 11892091 -112184081 - B4A SINE B4 -164 128 6 4 675 292 327 25 62 chr9 11892241 11892269 -112183903 + ID_B1 SINE B4 63 216 -8 4 675 339 300 68 15 chr9 11892269 11892401 -112183771 + PB1D10 SINE Alu 3 141 -8 4 675 1011 75 29 0 chr9 11893531 11893705 -112182467 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 4 675 369 0 0 0 chr9 11893710 11893751 -112182421 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 675 339 328 81 32 chr9 11894096 11894219 -112181953 + MLT2F LTR ERVL 6 134 -529 4 675 1713 148 49 16 chr9 11894343 11894651 -112181521 - ORR1A4 LTR MaLR -11 318 1 4 675 259 112 49 12 chr9 11895463 11895544 -112180628 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 675 1392 36 0 0 chr9 11896067 11896232 -112179940 - L1_Mm LINE L1 -363 5520 5356 4 675 755 69 4 29 chr9 11896212 11896317 -112179855 + L1_Mm LINE L1 5493 5615 -627 4 675 8202 40 1 2 chr9 11896317 11897313 -112178859 + L1Md_F2 LINE L1 5587 6581 -1 4 675 402 262 49 0 chr9 11897313 11897329 -112178843 + L1_Mm LINE L1 5616 5631 -611 4 675 22 70 0 0 chr9 11897577 11897620 -112178552 + AT_rich Low_complexity Low_complexity 1 43 0 4 675 239 93 23 0 chr9 11897942 11897985 -112178187 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 4 675 1683 180 71 18 chr9 11899502 11899841 -112176331 - ORR1B2 LTR MaLR -10 357 1 4 675 453 358 86 0 chr9 11899848 11899999 -112176173 - B3A SINE B2 -30 168 5 4 675 443 282 6 75 chr9 11900044 11900205 -112175967 - B3A SINE B2 0 198 49 4 675 5024 136 10 28 chr9 11900205 11901396 -112174776 - Lx3B LINE L1 -741 6232 5059 4 675 2451 137 9 2 chr9 11901401 11901824 -112174348 - Lx3B LINE L1 -1620 4266 3841 4 675 415 287 0 83 chr9 11905514 11905647 -112170525 + B2_Mm2 SINE B2 1 122 -73 4 675 378 0 0 0 chr9 11905702 11905744 -112170428 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 675 216 0 0 0 chr9 11905748 11905772 -112170400 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 675 228 310 66 41 chr9 11905811 11905932 -112170240 - RMER15 LTR ERVL -15 560 437 4 675 1930 173 77 16 chr9 11906249 11906613 -112169559 + ORR1B1 LTR MaLR 1 386 -8 4 675 204 149 0 0 chr9 11907559 11907606 -112168566 + (T)n Simple_repeat Simple_repeat 1 47 0 4 675 397 352 40 80 chr9 11907800 11908102 -112168070 + MLT2C1 LTR ERVL 52 341 -56 4 675 347 290 116 74 chr9 11908146 11908362 -112167810 - RLTR18B LTR ERVK -165 347 123 4 675 372 260 41 10 chr9 11908462 11908559 -112167613 - RLTR18B LTR ERVK -407 105 6 4 675 325 307 17 26 chr9 11908621 11908738 -112167434 - MLT1A0 LTR MaLR -221 144 29 4 675 234 390 17 89 chr9 11908794 11908974 -112167198 - B4A SINE B4 -61 231 65 4 675 735 309 134 39 chr9 11910496 11910879 -112165293 + MTE2b LTR MaLR 15 376 -14 4 675 23 0 0 0 chr9 11911592 11911615 -112164557 + AT_rich Low_complexity Low_complexity 1 23 0 4 675 21 0 0 0 chr9 11912117 11912138 -112164034 + AT_rich Low_complexity Low_complexity 1 21 0 4 675 481 296 60 17 chr9 11912409 11912711 -112163461 - MER33 DNA MER1_type -5 319 5 4 675 192 125 0 0 chr9 11913535 11913567 -112162605 + (TTAG)n Simple_repeat Simple_repeat 2 33 0 4 675 605 255 14 14 chr9 11913908 11914051 -112162121 + B1_Mur1 SINE Alu 6 148 -1 4 675 676 259 302 28 chr9 11914471 11914829 -112161343 + RMER20B LTR ERVK 124 579 -48 5 675 1016 296 70 57 chr9 11915285 11915740 -112160432 - Lx8 LINE L1 -244 7229 6769 5 675 375 341 174 26 chr9 11915760 11915950 -112160222 - ID_B1 SINE B4 -5 219 2 5 675 656 241 14 0 chr9 11916143 11916284 -112159888 - B1_Mur3 SINE Alu -6 143 1 5 675 664 245 7 0 chr9 11917392 11917531 -112158641 - B1_Mur2 SINE Alu -8 141 2 5 675 1928 184 48 14 chr9 11917548 11917900 -112158272 + ORR1B1 LTR MaLR 1 364 -30 5 675 1203 237 21 28 chr9 11917926 11918212 -112157960 + Lx9 LINE L1 6552 6835 -809 5 675 291 28 0 0 chr9 11918226 11918262 -112157910 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 675 591 167 0 43 chr9 11918271 11918409 -112157763 + Lx9 LINE L1 7513 7644 0 5 675 564 84 0 0 chr9 11919220 11919303 -112156869 + (TG)n Simple_repeat Simple_repeat 1 83 0 5 675 639 317 18 22 chr9 11919556 11919785 -112156387 - B4A SINE B4 -62 230 3 5 675 1029 98 0 0 chr9 11919863 11920006 -112156166 - B1_Mus1 SINE Alu 0 148 6 5 675 227 213 0 0 chr9 11920119 11920166 -112156006 + B3A SINE B2 1 47 -151 5 675 1331 190 91 100 chr9 11920169 11920519 -112155653 + ORR1B1 LTR MaLR 42 388 -6 5 675 274 137 59 0 chr9 11920517 11920568 -112155604 + B3A SINE B2 41 94 -104 5 675 285 198 132 0 chr9 11920720 11920811 -112155361 - L1M2 LINE L1 -700 5489 5387 5 675 1053 43 0 0 chr9 11920881 11921019 -112155153 + L1Md_F2 LINE L1 6433 6570 -12 5 675 206 333 37 12 chr9 11921063 11921145 -112155027 - L2a LINE L2 -239 3187 3104 5 675 1213 102 17 0 chr9 11921357 11921533 -112154639 + B2_Mm1t SINE B2 1 179 -14 5 675 354 135 0 2 chr9 11921546 11921604 -112154568 + B2_Mm2 SINE B2 47 103 -113 5 675 186 43 0 0 chr9 11921630 11921653 -112154519 + (A)n Simple_repeat Simple_repeat 1 23 0 5 675 365 308 0 9 chr9 11921653 11921758 -112154414 + B3 SINE B2 27 130 -86 5 675 264 200 0 0 chr9 11921940 11922000 -112154172 + CT-rich Low_complexity Low_complexity 1 60 0 5 675 294 292 76 48 chr9 11922000 11922291 -112153881 - L1M2 LINE L1 -992 5151 4853 5 675 1927 188 26 5 chr9 11922327 11922745 -112153427 - L1_Mur2 LINE L1 -5742 970 544 5 675 5959 96 23 8 chr9 11923407 11924286 -112151886 - RLTR13D2 LTR ERVK 0 1023 131 5 675 846 148 156 9 chr9 11924814 11924985 -112151187 - RLTR13C1 LTR ERVK -841 192 1 5 675 1119 223 308 5 chr9 11925277 11925683 -112150489 - RLTR24 LTR ERV1 0 529 1 5 675 273 297 23 38 chr9 11926098 11926231 -112149941 - L1M2 LINE L1 -3545 2598 2468 5 675 1466 238 17 62 chr9 11926241 11926658 -112149514 - RMER10B LTR ERVL 0 398 1 5 675 416 253 120 120 chr9 11926852 11927220 -112148952 - RMER17C-int LTR ERVK -264 2974 2607 5 675 30 45 0 0 chr9 11927452 11927496 -112148676 + AT_rich Low_complexity Low_complexity 1 44 0 5 676 1563 263 117 25 chr9 11927750 11928229 -112147943 - RMER15 LTR ERVL 0 575 53 5 676 22 35 0 0 chr9 11928446 11928475 -112147697 + AT_rich Low_complexity Low_complexity 1 29 0 5 676 211 386 69 12 chr9 11928689 11928849 -112147323 + MIRb SINE MIR 69 237 -31 5 676 22 0 0 0 chr9 11930620 11930642 -112145530 + AT_rich Low_complexity Low_complexity 1 22 0 5 676 600 14 0 0 chr9 11930919 11930988 -112145184 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 676 761 278 11 0 chr9 11931091 11931271 -112144901 - URR1B DNA MER1_type -43 182 1 5 676 785 185 0 6 chr9 11931410 11931584 -112144588 + CT-rich Low_complexity Low_complexity 2 174 0 5 676 442 228 194 8 chr9 11931641 11931765 -112144407 - B1_Mus1 SINE Alu -1 147 1 5 676 316 291 38 28 chr9 11932023 11932129 -112144043 - B4 SINE B4 0 292 186 5 676 255 259 73 12 chr9 11932225 11932361 -112143811 + RLTR40 LTR ERVK 538 772 -45 5 676 24 53 0 0 chr9 11932711 11932749 -112143423 + AT_rich Low_complexity Low_complexity 1 38 0 5 676 28 95 0 0 chr9 11933179 11933263 -112142909 + AT_rich Low_complexity Low_complexity 1 84 0 5 676 253 277 90 90 chr9 11933497 11933652 -112142520 + MLT1A1 LTR MaLR 246 400 -8 5 676 326 313 90 21 chr9 11933988 11934321 -112141851 + L1MA6 LINE L1 5943 6298 -2 5 676 282 284 73 20 chr9 11934378 11934529 -112141643 - L1M4 LINE L1 -1959 4187 4029 5 676 22 35 0 0 chr9 11935250 11935279 -112140893 + AT_rich Low_complexity Low_complexity 1 29 0 5 676 392 255 260 0 chr9 11935542 11935738 -112140434 + L1MC4a LINE L1 7390 7636 -246 5 676 219 139 0 0 chr9 11935986 11936022 -112140150 + (A)n Simple_repeat Simple_repeat 1 36 0 5 676 1099 140 5 11 chr9 11936033 11936221 -112139951 + B2_Mm2 SINE B2 2 188 -7 5 676 450 0 0 0 chr9 11936431 11936481 -112139691 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 676 459 310 80 25 chr9 11936880 11937042 -112139130 - B3A SINE B2 -16 182 12 5 676 31 26 0 0 chr9 11937926 11937964 -112138208 + AT_rich Low_complexity Low_complexity 1 38 0 5 676 441 0 0 0 chr9 11938993 11939042 -112137130 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 676 24 67 0 0 chr9 11939788 11939833 -112136339 + AT_rich Low_complexity Low_complexity 1 45 0 5 676 5678 99 13 56 chr9 11939997 11940388 -112135784 - RLTR13D6 LTR ERVK 0 902 552 5 676 3226 48 5 0 chr9 11940388 11940782 -112135390 + MTA_Mm LTR MaLR 1 396 0 5 676 5678 99 13 56 chr9 11940782 11941333 -112134839 - RLTR13D6 LTR ERVK -351 551 1 5 676 432 0 0 0 chr9 11941399 11941447 -112134725 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 676 2855 128 2 0 chr9 11942199 11942622 -112133550 - L1_Mm LINE L1 -198 5685 5262 5 676 3179 178 6 152 chr9 11942634 11943535 -112132637 + L1_Mur1 LINE L1 4865 5633 -253 5 676 21 0 0 0 chr9 11943649 11943670 -112132502 + AT_rich Low_complexity Low_complexity 1 21 0 5 676 183 139 0 0 chr9 11944029 11944065 -112132107 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 5 676 208 53 26 26 chr9 11944175 11944214 -112131958 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 676 7304 111 6 1 chr9 11944245 11945592 -112130580 - L1_Mus3 LINE L1 -4 6634 5281 5 676 3334 60 30 82 chr9 11945592 11946101 -112130071 + RLTR45 LTR ERVK 1 482 0 5 676 4472 58 107 19 chr9 11946101 11946737 -112129435 + RLTR45-int LTR ERVK 1 692 -6552 5 676 1094 65 0 0 chr9 11947033 11947171 -112129001 + RLTR45-int LTR ERVK 681 818 -6426 5 676 264 256 22 22 chr9 11947564 11947656 -112128516 + MMTV-int LTR ERVK 2413 2504 -4749 5 676 13983 47 46 8 chr9 11947940 11949762 -112126410 + RLTR45-int LTR ERVK 1322 3212 -4032 5 676 3905 83 33 36 chr9 11949732 11950341 -112125831 + RLTR45-int LTR ERVK 3380 3986 -3258 5 676 11540 36 29 3 chr9 11950334 11951737 -112124435 + RLTR45-int LTR ERVK 5065 6504 -740 5 676 2946 76 30 86 chr9 11951737 11952228 -112123944 + RLTR45 LTR ERVK 19 482 0 5 676 16055 136 9 19 chr9 11952228 11952897 -112123275 - L1_Mus3 LINE L1 -597 5286 4633 5 676 191 61 30 0 chr9 11952897 11952930 -112123242 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 676 16055 136 9 19 chr9 11952930 11953833 -112122339 - L1_Mus3 LINE L1 -1251 4632 3727 5 676 1403 75 5 0 chr9 11953833 11954019 -112122153 - B2_Mm1t SINE B2 -5 188 2 5 676 16055 136 9 19 chr9 11954019 11955218 -112120954 - L1_Mus3 LINE L1 -2157 3726 2541 5 676 27 49 0 0 chr9 11955228 11955269 -112120903 + AT_rich Low_complexity Low_complexity 1 41 0 5 676 1642 89 4 0 chr9 11955270 11955495 -112120677 - L1_Mus3 LINE L1 -3354 2529 2304 5 676 2779 21 9 0 chr9 11955495 11955830 -112120342 + ORR1A0 LTR MaLR 1 338 -8 5 676 4765 52 2 0 chr9 11955834 11956465 -112119707 + ORR1A0-int LTR MaLR 1 632 -1160 5 676 913 19 0 0 chr9 11956463 11956570 -112119602 + ORR1A0 LTR MaLR 240 346 0 5 676 6772 184 48 61 chr9 11956570 11958687 -112117485 - L1_Mus3 LINE L1 -3575 2308 225 5 676 6547 243 61 15 chr9 11958966 11960668 -112115504 - Lx7 LINE L1 -4 7692 5913 5 676 299 347 15 0 chr9 11960668 11960773 -112115399 - B1F SINE Alu -12 108 1 5 676 3139 56 5 5 chr9 11961611 11962007 -112114165 - MTA_Mm LTR MaLR 0 396 1 5 676 189 107 0 0 chr9 11963036 11963064 -112113108 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 676 1436 200 105 84 chr9 11963255 11963637 -112112535 - ORR1B1 LTR MaLR -4 390 1 5 676 2448 221 78 38 chr9 11963873 11964352 -112111820 + Lx7 LINE L1 4522 4978 -902 5 676 441 0 0 0 chr9 11964352 11964401 -112111771 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 676 302 0 26 0 chr9 11964406 11964444 -112111728 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 676 2448 221 78 38 chr9 11964444 11964639 -112111533 + Lx7 LINE L1 4984 5227 -653 5 676 1647 249 19 23 chr9 11964672 11965220 -112110952 + Lx7 LINE L1 5485 6029 -1667 5 676 7461 46 2 2 chr9 11965220 11966113 -112110059 - RLTR13B1 LTR ERVK 0 893 1 5 676 1647 272 43 31 chr9 11966113 11966257 -112109915 + Lx7 LINE L1 6030 6188 -1508 5 676 333 0 0 0 chr9 11966354 11966391 -112109781 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 676 1402 255 9 59 chr9 11966414 11966856 -112109316 + Lx7 LINE L1 6526 6945 -751 5 676 829 245 55 4 chr9 11966889 11967127 -112109045 + Lx7 LINE L1 7033 7282 -414 5 676 719 184 14 47 chr9 11967154 11967365 -112108807 + Lx7 LINE L1 7368 7571 -125 5 676 432 143 0 0 chr9 11967366 11967464 -112108708 + (T)n Simple_repeat Simple_repeat 1 98 0 5 676 3228 129 16 10 chr9 11969746 11970247 -112105925 - Lx LINE L1 0 6654 6151 5 676 275 173 0 0 chr9 11970253 11970305 -112105867 + Lx LINE L1 4756 4807 -1076 5 676 4051 136 19 2 chr9 11970316 11971299 -112104873 + Lx LINE L1 5150 6148 -506 5 676 630 343 41 15 chr9 11971593 11971862 -112104310 + B4A SINE B4 1 276 -16 5 676 186 150 0 0 chr9 11972226 11972266 -112103906 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 676 188 184 0 20 chr9 11974611 11974661 -112101511 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 676 182 210 0 31 chr9 11974676 11974740 -112101432 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 5 676 269 245 21 7 chr9 11974758 11974898 -112101274 + (TA)n Simple_repeat Simple_repeat 2 143 0 5 676 258 32 0 0 chr9 11975661 11975692 -112100480 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 5 676 306 329 12 0 chr9 11975692 11975774 -112100398 - B3 SINE B2 -16 200 118 5 676 547 283 101 5 chr9 11977349 11977537 -112098635 + MTD LTR MaLR 63 268 -151 5 676 1649 285 87 44 chr9 11977537 11978191 -112097981 + MTC-int LTR MaLR 577 1258 0 5 676 798 323 57 23 chr9 11978378 11978641 -112097531 + B4A SINE B4 1 272 -20 5 676 431 379 7 0 chr9 11979106 11979259 -112096913 - RSINE1 SINE B4 0 165 12 5 676 866 145 0 12 chr9 11979419 11979586 -112096586 + GA-rich Low_complexity Low_complexity 4 168 0 5 676 1193 83 0 14 chr9 11979590 11979809 -112096363 + (GAAA)n Simple_repeat Simple_repeat 1 215 0 5 676 22 0 0 0 chr9 11979906 11979928 -112096244 + AT_rich Low_complexity Low_complexity 1 22 0 5 676 22 0 0 0 chr9 11979945 11979967 -112096205 + AT_rich Low_complexity Low_complexity 1 22 0 5 676 384 275 90 15 chr9 11980125 11980258 -112095914 + MER34A LTR ERV1 4 146 -425 5 676 202 317 15 45 chr9 11981027 11981093 -112095079 - L3b LINE CR1 -70 412 349 5 676 660 36 0 0 chr9 11982739 11982822 -112093350 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 676 1673 170 60 7 chr9 11983230 11983532 -112092640 + ORR1A3 LTR MaLR 1 318 -8 5 676 339 44 0 0 chr9 11983533 11983578 -112092594 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 676 288 192 0 19 chr9 11984717 11984770 -112091402 - PB1D7 SINE Alu -51 69 18 6 676 212 320 58 67 chr9 11984727 11984831 -112091341 - ID_B1 SINE B4 -84 140 38 6 676 744 305 37 0 chr9 11984831 11985021 -112091151 - Lx9 LINE L1 -1090 6554 6358 6 676 600 53 0 0 chr9 11985040 11985116 -112091056 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 676 252 0 0 0 chr9 11985116 11985144 -112091028 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 676 198 103 0 0 chr9 11985482 11985511 -112090661 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 6 676 1264 104 22 0 chr9 11985943 11986126 -112090046 + B2_Mm2 SINE B2 1 187 -8 6 676 23 54 0 0 chr9 11986155 11986192 -112089980 + AT_rich Low_complexity Low_complexity 1 37 0 6 676 5267 58 0 0 chr9 11987647 11988305 -112087867 + L1Md_F2 LINE L1 5925 6582 0 6 676 590 315 7 7 chr9 11988981 11989125 -112087047 + ORR1E LTR MaLR 4 147 -212 6 676 308 77 62 0 chr9 11989161 11989226 -112086946 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 6 676 385 342 147 6 chr9 11990875 11991031 -112085141 + B3A SINE B2 5 182 -16 6 676 781 168 29 7 chr9 11991918 11992056 -112084116 + B1_Mur4 SINE Alu 10 150 0 6 676 274 246 18 0 chr9 11992090 11992147 -112084025 - ID2 SINE ID -24 59 2 6 676 4085 46 8 2 chr9 11992260 11992972 -112083200 - L1Md_F2 LINE L1 -495 6087 5373 6 676 3974 52 0 12 chr9 11992972 11993480 -112082692 + L1Md_F2 LINE L1 6081 6582 0 6 676 423 0 0 0 chr9 11994916 11994963 -112081209 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 676 468 0 0 0 chr9 11994963 11995014 -112081158 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 676 668 271 19 2 chr9 11995375 11995584 -112080588 - L1_Mur3 LINE L1 -2119 4027 3778 6 676 456 342 27 0 chr9 11995921 11996070 -112080102 - B4 SINE B4 -80 212 60 6 676 7222 78 14 5 chr9 11996158 11997197 -112078975 + L1_Mus2 LINE L1 5519 6566 0 6 676 195 100 0 0 chr9 11998276 11998306 -112077866 + (C)n Simple_repeat Simple_repeat 1 30 0 6 676 1136 266 35 22 chr9 11998600 11998915 -112077257 - ORR1D2 LTR MaLR 0 370 52 6 676 294 235 19 10 chr9 11999176 11999279 -112076893 + (TA)n Simple_repeat Simple_repeat 2 105 0 6 676 3620 85 10 2 chr9 11999503 12000000 -112076172 + L1_Mus3 LINE L1 6083 6583 -55 6 676 311 41 0 0 chr9 12000000 12000049 -112076123 + L1_Mus4 LINE L1 6582 6630 -6 1 676 738 80 42 18 chr9 12000445 12000610 -112075562 + (TAGA)n Simple_repeat Simple_repeat 2 170 0 2 676 509 167 75 14 chr9 12000639 12000785 -112075387 + (TAGA)n Simple_repeat Simple_repeat 3 157 0 2 676 447 164 0 0 chr9 12000785 12000889 -112075283 + GA-rich Low_complexity Low_complexity 1 104 0 3 676 692 259 76 91 chr9 12000898 12001032 -112075140 - RLTR25A LTR ERVK 0 1103 957 4 676 390 57 0 0 chr9 12001032 12001085 -112075087 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 5 676 692 259 76 91 chr9 12001085 12001226 -112074946 - RLTR25A LTR ERVK -147 956 832 4 676 588 52 42 34 chr9 12001449 12001568 -112074604 + (TAGA)n Simple_repeat Simple_repeat 4 123 0 6 676 883 261 54 92 chr9 12001614 12002003 -112074169 - RLTR17 LTR ERVK 0 692 319 7 676 331 344 139 28 chr9 12002166 12002489 -112073683 + L1MD LINE L1 2470 2828 -3318 8 676 1153 56 7 0 chr9 12002491 12002635 -112073537 + B1_Mus1 SINE Alu 3 147 -1 9 676 21 36 0 0 chr9 12002832 12002860 -112073312 + AT_rich Low_complexity Low_complexity 1 28 0 1 676 242 237 62 50 chr9 12003222 12003302 -112072870 - B4 SINE B4 -209 83 3 1 676 572 55 0 11 chr9 12004949 12005041 -112071131 - L1_Mus3 LINE L1 -7 6631 6541 1 676 22 0 0 0 chr9 12005763 12005785 -112070387 + AT_rich Low_complexity Low_complexity 1 22 0 1 676 18424 108 19 12 chr9 12006002 12008910 -112067262 - L1_Mur1 LINE L1 -956 4930 2003 1 676 2107 85 0 11 chr9 12008917 12009233 -112066939 + L1Md_F2 LINE L1 6285 6582 0 1 676 6921 99 12 4 chr9 12009532 12010402 -112065770 + Lx3_Mus LINE L1 5998 6877 -132 1 676 315 0 0 0 chr9 12010402 12010437 -112065735 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 676 6921 99 12 4 chr9 12010437 12010562 -112065610 + Lx3_Mus LINE L1 6878 7001 -8 1 676 257 342 45 33 chr9 12011311 12011553 -112064619 - L1MB8 LINE L1 -50 6128 5884 1 676 354 312 30 23 chr9 12011771 12011902 -112064270 + MTE-int LTR MaLR 638 769 -966 1 676 568 336 94 69 chr9 12012175 12012636 -112063536 + MTE-int LTR MaLR 1103 1548 -187 1 676 531 0 0 0 chr9 12012695 12012754 -112063418 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 2 676 468 51 0 0 chr9 12012761 12012820 -112063352 + (TTA)n Simple_repeat Simple_repeat 2 60 0 2 676 1036 88 0 0 chr9 12012828 12012964 -112063208 - B1_Mus1 SINE Alu -10 138 3 2 676 233 322 58 17 chr9 12014628 12014748 -112061424 + L1M3 LINE L1 5737 5861 -310 2 676 21 0 0 0 chr9 12015470 12015491 -112060681 + AT_rich Low_complexity Low_complexity 1 21 0 2 676 294 29 0 0 chr9 12015759 12015794 -112060378 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 676 330 299 123 18 chr9 12017292 12017769 -112058403 + Lx9 LINE L1 5392 5902 -389 2 676 228 364 87 40 chr9 12018062 12018188 -112057984 + MLT-int LTR MaLR 993 1124 -611 2 676 1367 235 98 18 chr9 12018262 12018648 -112057524 + MTD LTR MaLR 3 419 0 2 676 791 93 8 0 chr9 12019495 12019613 -112056559 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 676 348 340 49 17 chr9 12019615 12019881 -112056291 + Lx9 LINE L1 6973 7303 -341 2 676 311 372 25 42 chr9 12020004 12020122 -112056050 + RSINE1 SINE B4 49 164 -1 3 676 809 245 79 12 chr9 12021028 12021280 -112054892 - Lx3C LINE L1 -2 6974 6706 3 676 2953 84 44 44 chr9 12021296 12021771 -112054401 + IAPLTR2_Mm LTR ERVK 1 475 0 3 676 10980 34 32 68 chr9 12021781 12023278 -112052894 + IAPEz-int LTR ERVK 35 1477 -5004 3 676 1851 99 8 0 chr9 12023273 12023525 -112052647 + IAPEz-int LTR ERVK 2244 2497 -5183 3 676 973 87 0 0 chr9 12023522 12023648 -112052524 + IAPEz-int LTR ERVK 4785 4910 -2770 3 676 26567 11 1 0 chr9 12023648 12026601 -112049571 + IAPEz-int LTR ERVK 3525 6481 0 3 676 2953 84 44 44 chr9 12026601 12027076 -112049096 + IAPLTR2_Mm LTR ERVK 1 475 0 3 676 546 333 55 58 chr9 12027082 12027426 -112048746 - Lx9 LINE L1 -206 7438 7096 3 676 1122 287 131 40 chr9 12027560 12028294 -112047878 - Lx9 LINE L1 -1668 5976 5123 3 676 264 377 107 8 chr9 12028405 12028536 -112047636 - RSINE1 SINE B4 -18 147 4 3 676 235 154 0 0 chr9 12028930 12028969 -112047203 + MTD LTR MaLR 18 56 -365 3 676 315 172 34 17 chr9 12029022 12029081 -112047091 - URR1B DNA MER1_type -129 96 37 3 676 689 279 116 15 chr9 12029092 12029387 -112046785 + MTD LTR MaLR 84 405 -14 3 676 423 281 25 0 chr9 12029406 12029527 -112046645 + MER110 LTR ERV1 356 479 -12 3 676 605 146 38 38 chr9 12029794 12029951 -112046221 + L1Md_T LINE L1 6426 6582 0 4 676 1429 101 64 0 chr9 12030223 12030442 -112045730 - L1Md_F2 LINE L1 0 6582 6350 4 676 22 0 0 0 chr9 12030720 12030742 -112045430 + AT_rich Low_complexity Low_complexity 1 22 0 4 676 416 348 22 7 chr9 12031033 12031169 -112045003 - B1F SINE Alu -2 147 10 4 676 258 277 0 0 chr9 12031199 12031264 -112044908 - MER31B LTR ERV1 -383 83 19 4 676 290 397 73 27 chr9 12032134 12032502 -112043670 - MLT1C LTR MaLR -80 387 3 4 676 2685 214 16 2 chr9 12032832 12033337 -112042835 - RMER20A LTR ERVK -4 512 1 4 676 22 35 0 0 chr9 12033347 12033376 -112042796 + AT_rich Low_complexity Low_complexity 1 29 0 4 676 300 370 58 15 chr9 12033584 12033721 -112042451 + MTE2b LTR MaLR 2 144 -235 4 676 519 283 69 14 chr9 12034302 12034650 -112041522 + Lx6 LINE L1 949 1315 -6413 4 676 5788 198 68 53 chr9 12034663 12035338 -112040834 + Lx6 LINE L1 1375 2068 -3812 4 676 221 83 28 0 chr9 12035338 12035374 -112040798 + (CCA)n Simple_repeat Simple_repeat 1 37 0 5 676 5788 198 68 53 chr9 12035374 12036256 -112039916 + Lx6 LINE L1 2069 2985 -2895 4 676 375 23 0 0 chr9 12036256 12036300 -112039872 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 676 5788 198 68 53 chr9 12036300 12036353 -112039819 + Lx6 LINE L1 2986 3005 -2875 4 676 389 20 20 0 chr9 12036353 12036403 -112039769 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 676 5788 198 68 53 chr9 12036403 12036531 -112039641 + Lx6 LINE L1 3006 3139 -2741 4 676 3894 221 41 12 chr9 12036570 12037834 -112038338 + Lx6 LINE L1 5004 6312 -1148 4 676 5007 94 76 21 chr9 12037834 12038598 -112037574 + RLTR13C2 LTR ERVK 1 806 -2 5 676 3544 268 31 32 chr9 12038598 12038761 -112037411 + Lx6 LINE L1 6313 6467 -993 4 676 1070 196 4 104 chr9 12038761 12039011 -112037161 + URR1A DNA MER1_type 1 225 -1 5 676 3544 268 31 32 chr9 12039011 12039190 -112036982 + Lx6 LINE L1 6468 6643 -817 4 676 366 242 132 0 chr9 12039198 12039289 -112036883 + Lx6 LINE L1 7050 7152 -308 4 676 25 51 0 0 chr9 12039837 12039876 -112036296 + AT_rich Low_complexity Low_complexity 1 39 0 5 676 21 36 0 0 chr9 12040984 12041012 -112035160 + AT_rich Low_complexity Low_complexity 1 28 0 5 676 270 0 0 0 chr9 12041381 12041411 -112034761 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 676 6276 59 16 1 chr9 12041471 12042267 -112033905 + RLTR13C2 LTR ERVK 1 808 0 5 676 230 312 10 31 chr9 12042313 12042409 -112033763 - B2_Mm2 SINE B2 -99 96 3 5 676 1631 199 57 3 chr9 12042607 12042924 -112033248 + Lx4A LINE L1 6725 7058 0 6 676 22 35 0 0 chr9 12042924 12042953 -112033219 + AT_rich Low_complexity Low_complexity 1 29 0 6 676 699 305 76 46 chr9 12043598 12043966 -112032206 - MTEa LTR MaLR 0 379 1 6 676 915 80 0 0 chr9 12044361 12044486 -112031686 + (GA)n Simple_repeat Simple_repeat 2 126 0 6 676 5435 121 12 64 chr9 12046360 12047312 -112028860 - RLTR13D6 LTR ERVK 0 902 1 6 676 28 91 0 0 chr9 12048305 12048382 -112027790 + AT_rich Low_complexity Low_complexity 1 77 0 6 676 534 91 0 0 chr9 12048594 12048671 -112027501 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 676 23 54 0 0 chr9 12049370 12049407 -112026765 + AT_rich Low_complexity Low_complexity 1 37 0 6 676 582 159 0 0 chr9 12049564 12049671 -112026501 + (TG)n Simple_repeat Simple_repeat 2 108 0 6 676 365 102 17 0 chr9 12049680 12049739 -112026433 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 676 657 105 14 36 chr9 12049953 12050091 -112026081 + Lx LINE L1 6502 6636 -18 7 676 806 296 33 94 chr9 12051985 12052347 -112023825 + ORR1E LTR MaLR 18 357 -2 7 676 396 275 179 24 chr9 12053311 12053434 -112022738 - B1F2 SINE Alu -2 147 6 7 676 299 25 0 24 chr9 12053992 12054033 -112022139 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 7 676 281 295 44 9 chr9 12054674 12054787 -112021385 - LTR37A LTR ERV1 0 426 310 7 676 22 35 0 0 chr9 12054818 12054847 -112021325 + AT_rich Low_complexity Low_complexity 1 29 0 7 676 378 0 0 0 chr9 12055163 12055205 -112020967 + (TAA)n Simple_repeat Simple_repeat 1 42 0 7 676 301 300 135 9 chr9 12055210 12055321 -112020851 + PB1D10 SINE Alu 6 130 -19 7 676 243 94 15 45 chr9 12056315 12056382 -112019790 + T-rich Low_complexity Low_complexity 2 66 0 7 676 412 345 34 10 chr9 12056402 12056610 -112019562 - B3 SINE B2 0 216 4 7 676 409 271 16 8 chr9 12056981 12057104 -112019068 + Lx7 LINE L1 7051 7174 -522 8 676 918 217 34 24 chr9 12057939 12058147 -112018025 + ORR1B2 LTR MaLR 155 364 -3 8 84 2317 191 46 52 chr9 12058323 12058842 -112017330 - RLTR28 LTR ERVL 0 524 9 8 677 329 325 131 0 chr9 12059253 12059413 -112016759 + MLT2B1 LTR ERVL 8 188 -332 8 677 206 118 0 0 chr9 12059786 12059820 -112016352 + (A)n Simple_repeat Simple_repeat 1 34 0 8 677 186 43 0 0 chr9 12059855 12059878 -112016294 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 8 677 285 75 0 0 chr9 12059904 12059944 -112016228 + (T)n Simple_repeat Simple_repeat 1 40 0 8 677 239 306 31 57 chr9 12060076 12060270 -112015902 - Lx8 LINE L1 0 7473 7285 8 677 28 0 0 0 chr9 12060530 12060558 -112015614 + AT_rich Low_complexity Low_complexity 1 28 0 8 677 311 268 11 44 chr9 12060618 12060708 -112015464 + B3A SINE B2 47 133 -65 8 677 1389 101 36 5 chr9 12061577 12061796 -112014376 - L1_Mus4 LINE L1 -496 6140 5915 9 677 2858 111 75 4 chr9 12061797 12062249 -112013923 + L1_Mus4 LINE L1 6153 6636 0 9 677 1763 180 3 76 chr9 12065813 12066168 -112010004 + ORR1A4 LTR MaLR 1 329 0 9 677 5328 64 29 0 chr9 12066288 12066989 -112009183 - L1Md_F2 LINE L1 0 6582 5862 9 677 21622 28 1 0 chr9 12066998 12070336 -112005836 - L1Md_T LINE L1 0 6582 3240 9 677 428 326 5 49 chr9 12070611 12070638 -112005534 + ID_B1 SINE B4 65 157 -135 9 677 729 223 0 7 chr9 12070638 12070778 -112005394 + B1_Mm SINE Alu 9 147 0 9 677 428 326 5 49 chr9 12070778 12070800 -112005372 + ID_B1 SINE B4 158 241 -51 9 677 255 360 0 14 chr9 12070835 12070973 -112005199 + Lx9 LINE L1 7127 7262 -382 9 677 2827 198 44 62 chr9 12070983 12071780 -112004392 - RLTR13D6 LTR ERVK 0 803 1 9 677 1151 242 78 7 chr9 12071788 12072058 -112004114 - RMER20B LTR ERVK -32 595 307 9 677 2971 85 2 20 chr9 12072080 12072489 -112003683 - L1_Mus1 LINE L1 0 6567 6166 9 677 1709 75 20 4 chr9 12072489 12072742 -112003430 + L1_Mus1 LINE L1 5908 6164 -403 9 677 1014 179 0 0 chr9 12072742 12072915 -112003257 - RMER20B LTR ERVK -308 319 147 9 677 195 327 86 38 chr9 12073895 12074000 -112002172 - L2 LINE L2 -1125 2294 2185 1 677 244 188 0 0 chr9 12074170 12074218 -112001954 - RMER17B LTR ERVK 0 958 911 1 677 228 250 6 19 chr9 12074470 12074492 -112001680 + (CATA)n Simple_repeat Simple_repeat 4 25 0 1 677 627 75 0 0 chr9 12074492 12074586 -112001586 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 677 228 250 6 19 chr9 12074586 12074722 -112001450 + (CATA)n Simple_repeat Simple_repeat 2 135 0 1 677 659 326 25 0 chr9 12074846 12075042 -112001130 - B3 SINE B2 -14 202 2 1 677 25 0 0 0 chr9 12076970 12076995 -111999177 + AT_rich Low_complexity Low_complexity 1 25 0 1 677 29 0 0 0 chr9 12077427 12077456 -111998716 + AT_rich Low_complexity Low_complexity 1 29 0 1 677 209 179 0 0 chr9 12078609 12078648 -111997524 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 677 3393 70 8 64 chr9 12078750 12079253 -111996919 + MT2C_Mm LTR ERVL 1 475 0 1 677 531 69 0 0 chr9 12079605 12079677 -111996495 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 1 677 306 351 49 11 chr9 12080429 12080615 -111995557 + MIRb SINE MIR 1 199 -69 1 677 545 90 22 22 chr9 12081459 12081550 -111994622 + ORR1B1 LTR MaLR 41 131 -263 1 677 1343 177 32 4 chr9 12081743 12081992 -111994180 + ORR1A4 LTR MaLR 74 329 0 1 677 23 33 0 0 chr9 12082000 12082030 -111994142 + AT_rich Low_complexity Low_complexity 1 30 0 1 677 393 58 0 0 chr9 12082285 12082337 -111993835 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 677 21 0 0 0 chr9 12082477 12082498 -111993674 + AT_rich Low_complexity Low_complexity 1 21 0 1 677 29945 100 13 15 chr9 12082695 12088874 -111987298 - L1Md_F2 LINE L1 -1 6581 429 1 677 5016 206 59 19 chr9 12089018 12090417 -111985755 - Lx5 LINE L1 -130 6920 5471 1 677 1547 189 119 6 chr9 12091218 12091554 -111984618 - ORR1C1 LTR MaLR -2 376 3 1 677 1462 229 88 3 chr9 12091862 12092225 -111983947 + ORR1B1 LTR MaLR 1 394 0 1 677 429 20 0 0 chr9 12092816 12092866 -111983306 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1 677 247 261 34 11 chr9 12093074 12093163 -111983009 - L1MCb LINE L1 -4903 1142 1052 1 677 425 214 11 43 chr9 12093515 12093608 -111982564 - MTC LTR MaLR -8 413 324 1 677 1373 220 80 3 chr9 12094039 12094327 -111981845 - MTC LTR MaLR -111 310 1 1 677 4172 224 50 45 chr9 12094339 12095399 -111980773 - MTC-int LTR MaLR -33 1225 161 1 677 1647 222 29 29 chr9 12095406 12095827 -111980345 - MTC LTR MaLR 0 421 1 1 677 261 0 0 0 chr9 12096308 12096337 -111979835 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 677 1218 210 45 31 chr9 12097492 12097846 -111978326 + RLTR10D LTR ERVK 1 359 0 1 677 16884 258 19 24 chr9 12097848 12103047 -111973125 + IAP-d-int LTR ERVK 3 5176 -1366 1 677 2016 259 2 10 chr9 12103042 12103624 -111972548 + IAP-d-int LTR ERVK 5480 6056 -486 1 677 1701 177 18 80 chr9 12103676 12104076 -111972096 + IAP-d-int LTR ERVK 6168 6542 0 1 677 1282 205 51 37 chr9 12104076 12104430 -111971742 + RLTR10D LTR ERVK 1 359 0 1 677 207 0 0 0 chr9 12106700 12106723 -111969449 + (T)n Simple_repeat Simple_repeat 1 23 0 1 677 466 319 37 43 chr9 12106832 12106996 -111969176 - RSINE1 SINE B4 0 165 3 1 677 240 86 0 0 chr9 12107283 12107318 -111968854 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 677 234 0 0 0 chr9 12107318 12107343 -111968829 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 677 24 32 0 0 chr9 12107401 12107432 -111968740 + AT_rich Low_complexity Low_complexity 1 31 0 1 677 1501 180 3 33 chr9 12107679 12107984 -111968188 + Lx LINE L1 6359 6654 0 1 677 6942 166 43 13 chr9 12108218 12109626 -111966546 + L1_Mur2 LINE L1 3759 5216 -661 1 677 2184 116 0 6 chr9 12109626 12109939 -111966233 + RLTR10E LTR ERVK 1 311 0 1 677 6942 166 43 13 chr9 12109939 12109987 -111966185 + L1_Mur2 LINE L1 5217 5258 -619 1 677 6944 72 10 10 chr9 12109984 12110961 -111965211 + L1_Mus1 LINE L1 5597 6654 0 1 677 5653 139 51 7 chr9 12110972 12112315 -111963857 + Lx LINE L1 5252 6654 0 1 677 989 68 15 0 chr9 12112873 12113005 -111963167 + B1_Mm SINE Alu 1 134 -13 1 677 185 0 0 39 chr9 12113005 12113031 -111963141 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 677 580 195 0 9 chr9 12115306 12115545 -111960627 + CT-rich Low_complexity Low_complexity 1 236 0 1 677 862 266 87 18 chr9 12115874 12116207 -111959965 + Lx8 LINE L1 7116 7471 -2 1 677 399 202 0 11 chr9 12116366 12116456 -111959716 - Lx4B LINE L1 -326 6732 6644 1 677 26 50 0 0 chr9 12116510 12116550 -111959622 + AT_rich Low_complexity Low_complexity 1 40 0 1 677 315 164 0 0 chr9 12117592 12117653 -111958519 + (CTG)n Simple_repeat Simple_repeat 2 62 0 1 677 271 290 45 64 chr9 12117776 12118067 -111958105 - L1MC2 LINE L1 -276 6068 5779 1 677 557 311 132 28 chr9 12118138 12118636 -111957536 - L1MC LINE L1 -2492 3654 3106 1 677 583 283 69 6 chr9 12118802 12118976 -111957196 + B3A SINE B2 1 185 -13 1 677 372 22 0 0 chr9 12119219 12119264 -111956908 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 677 204 40 0 0 chr9 12119410 12119435 -111956737 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1 677 237 255 0 105 chr9 12119778 12119835 -111956337 + 5S rRNA rRNA 8 58 -63 1 677 21 57 0 0 chr9 12120832 12120867 -111955305 + AT_rich Low_complexity Low_complexity 1 35 0 1 677 3953 150 19 7 chr9 12121579 12122580 -111953592 - Lx LINE L1 -402 6252 5241 1 677 9468 186 18 4 chr9 12122571 12125228 -111950944 - Lx LINE L1 -5 6649 3949 1 677 8402 116 21 33 chr9 12125232 12125587 -111950585 + MusHAL1 LINE L1 900 1248 -1464 1 677 207 0 0 0 chr9 12125587 12125610 -111950562 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 677 1328 79 11 5 chr9 12125612 12125802 -111950370 - L1Md_F2 LINE L1 -11 6571 6381 1 677 8402 116 21 33 chr9 12125802 12126977 -111949195 + MusHAL1 LINE L1 1249 2416 -296 1 677 478 232 27 0 chr9 12126978 12127090 -111949082 + L1M2 LINE L1 3648 3762 -2381 1 677 9790 33 8 1 chr9 12127469 12129360 -111946812 - L1Md_T LINE L1 0 6582 4671 1 677 780 189 104 114 chr9 12129360 12129826 -111946346 - RLTR6_Mm LTR ERV1 -70 584 1 1 677 23891 253 25 24 chr9 12129826 12132487 -111943685 - RLTR6-int LTR ERV1 0 7778 5170 1 677 3517 13 5 0 chr9 12132487 12132881 -111943291 + MTA_Mm LTR MaLR 1 396 0 1 677 9614 16 2 0 chr9 12132881 12133977 -111942195 + MTA_Mm-int LTR MaLR 1 1098 0 1 677 3517 13 5 0 chr9 12133977 12134371 -111941801 + MTA_Mm LTR MaLR 1 396 0 1 677 23891 253 25 24 chr9 12134371 12138989 -111937183 - RLTR6-int LTR ERV1 -2609 5169 496 1 677 865 165 0 18 chr9 12139044 12139211 -111936961 - RLTR6-int LTR ERV1 -7526 252 89 1 677 780 188 111 112 chr9 12139308 12139789 -111936383 - RLTR6_Mm LTR ERV1 -51 603 1 1 677 27202 33 4 9 chr9 12139789 12144030 -111932142 - L1Md_A LINE L1 -1209 4674 462 1 677 643 246 8 0 chr9 12144071 12144205 -111931967 + B1_Mur3 SINE Alu 2 136 -13 1 677 474 300 45 9 chr9 12144323 12144545 -111931627 - Lx9 LINE L1 -151 7493 7264 1 677 396 0 0 0 chr9 12144827 12144871 -111931301 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 1 677 226 273 30 10 chr9 12145381 12145481 -111930691 - Lx8 LINE L1 0 7473 7372 1 677 474 114 0 0 chr9 12145696 12145775 -111930397 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 677 443 276 71 29 chr9 12147020 12147296 -111928876 + ORR1D2 LTR MaLR 10 370 0 1 677 507 355 24 33 chr9 12147379 12147589 -111928583 - ID_B1 SINE B4 -6 218 11 1 677 669 265 90 0 chr9 12147895 12148084 -111928088 + B3 SINE B2 5 210 -6 1 677 1101 218 95 3 chr9 12148084 12148369 -111927803 + Lx3C LINE L1 6663 6973 -3 1 677 331 349 117 29 chr9 12148417 12148588 -111927584 + B4A SINE B4 103 288 -4 1 677 28 79 0 0 chr9 12148700 12148763 -111927409 + AT_rich Low_complexity Low_complexity 1 63 0 1 677 267 322 57 16 chr9 12150545 12150668 -111925504 - B1F2 SINE Alu -9 140 13 1 677 941 338 21 34 chr9 12150957 12151337 -111924835 + MTEa LTR MaLR 5 379 0 1 677 2749 234 41 55 chr9 12151946 12152804 -111923368 + L1_Mur3 LINE L1 60 905 -6823 1 677 267 104 0 20 chr9 12152812 12152861 -111923311 + L1_Mur3 LINE L1 2107 2154 -3723 1 677 2530 272 123 14 chr9 12152863 12153692 -111922480 + RMER1C Other Other 397 1315 -27 1 677 989 177 153 90 chr9 12153710 12153931 -111922241 + L1_Mur3 LINE L1 2147 2393 -3487 1 677 3512 99 4 0 chr9 12153931 12154415 -111921757 + L1_Mus2 LINE L1 6081 6566 0 1 677 989 177 153 90 chr9 12154415 12154559 -111921613 + L1_Mur3 LINE L1 2394 2535 -3345 1 677 305 186 0 14 chr9 12154559 12154630 -111921542 + Lx7 LINE L1 7627 7696 0 1 677 486 0 0 0 chr9 12155173 12155227 -111920945 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 677 188 319 142 47 chr9 12156280 12156428 -111919744 + L2 LINE L2 1457 1618 -1801 1 677 944 159 0 6 chr9 12158016 12158193 -111917979 + CT-rich Low_complexity Low_complexity 3 178 0 1 677 1244 223 44 119 chr9 12158545 12159135 -111917037 - Lx7 LINE L1 0 7696 7151 1 677 491 264 9 19 chr9 12159155 12159263 -111916909 - B3 SINE B2 -109 107 1 1 677 207 100 0 0 chr9 12159600 12159630 -111916542 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 677 204 40 0 0 chr9 12159989 12160014 -111916158 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 677 815 287 55 80 chr9 12160095 12160452 -111915720 - ORR1E LTR MaLR -14 365 1 1 677 1393 242 46 18 chr9 12160612 12161003 -111915169 - MERVL_2A-int LTR ERVL -2499 3262 2861 1 677 655 212 76 0 chr9 12161051 12161183 -111914989 - ORR1E-int LTR MaLR -1226 144 3 1 677 653 289 69 5 chr9 12161185 12161387 -111914785 - ORR1E LTR MaLR 0 370 156 1 677 4178 80 45 8 chr9 12161387 12161980 -111914192 + L1_Mus2 LINE L1 5952 6566 0 1 677 213 305 26 79 chr9 12162342 12162456 -111913716 + B2_Mm2 SINE B2 18 125 -70 1 677 2088 197 106 35 chr9 12162554 12162806 -111913366 + RLTR12A LTR ERVK 1 248 -320 1 677 351 0 0 0 chr9 12162806 12162845 -111913327 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 677 537 16 0 0 chr9 12162845 12162906 -111913266 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 677 2088 197 106 35 chr9 12162906 12163172 -111913000 + RLTR12A LTR ERVK 249 556 -12 1 677 1917 158 3 6 chr9 12163408 12163720 -111912452 - RLTR10E LTR ERVK 0 311 1 1 677 3956 119 12 1 chr9 12163724 12164404 -111911768 - IAPEY3-int LTR ERVK -3 7677 6965 1 677 1383 85 117 0 chr9 12164404 12164627 -111911545 - IAP-d-int LTR ERVK -1287 5255 5007 1 677 332 158 0 0 chr9 12164627 12164684 -111911488 - IAP-d-int LTR ERVK -6039 503 447 1 677 450 315 20 20 chr9 12164706 12165029 -111911143 - IAPEY3-int LTR ERVK -5481 1061 822 1 677 2061 86 251 0 chr9 12165124 12165476 -111910696 - RLTR10-int LTR ERVK -995 992 553 1 677 952 75 12 25 chr9 12165486 12165649 -111910523 + (TTTCC)n Simple_repeat Simple_repeat 3 163 0 1 677 352 47 0 0 chr9 12165737 12165780 -111910392 - RLTR10-int LTR ERVK -7314 267 225 1 677 267 182 0 0 chr9 12165780 12165824 -111910348 - RLTR27 LTR ERVK -34 275 232 1 677 711 106 0 0 chr9 12165824 12165928 -111910244 - RLTR10-int LTR ERVK -7477 104 1 1 677 2066 126 3 6 chr9 12165928 12166240 -111909932 - RLTR10E LTR ERVK 0 311 1 1 677 23 0 0 0 chr9 12167047 12167070 -111909102 + AT_rich Low_complexity Low_complexity 1 23 0 1 677 246 81 0 0 chr9 12167284 12167321 -111908851 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 677 321 26 0 0 chr9 12167387 12167425 -111908747 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 677 241 385 68 104 chr9 12167546 12167900 -111908272 - MLT1E1 LTR MaLR 0 654 314 2 677 355 292 74 37 chr9 12168578 12168713 -111907459 + B1F SINE Alu 9 148 -1 2 677 189 0 0 0 chr9 12168715 12168736 -111907436 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 677 1071 247 93 65 chr9 12168826 12169225 -111906947 + Lx2B LINE L1 6517 6926 -74 2 677 198 0 0 0 chr9 12169239 12169261 -111906911 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2 677 245 367 31 0 chr9 12169586 12169684 -111906488 - B4A SINE B4 -160 132 32 2 677 510 282 153 33 chr9 12169879 12170272 -111905900 - L1M4c LINE L1 -5126 2208 1769 2 677 417 229 99 18 chr9 12170588 12170699 -111905473 - ID_B1 SINE B4 0 224 105 2 677 2018 292 97 9 chr9 12170721 12171502 -111904670 - RCHARR1 DNA MER1_type -120 854 5 2 677 577 266 34 120 chr9 12171803 12172012 -111904160 + B3 SINE B2 4 194 -1 2 677 32014 74 6 4 chr9 12172937 12178011 -111898161 + L1Md_F2 LINE L1 408 5589 -297 2 677 7822 57 2 2 chr9 12178011 12179005 -111897167 + L1Md_F2 LINE L1 5590 6583 -2 2 677 236 325 19 30 chr9 12179345 12179428 -111896744 - PB1D7 SINE Alu -233 81 2 2 677 190 211 228 0 chr9 12180212 12180269 -111895903 - L3 LINE CR1 -4374 115 46 2 677 351 0 0 0 chr9 12180846 12180885 -111895287 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 677 1007 271 117 7 chr9 12181183 12181491 -111894681 - Lx9 LINE L1 -212 7432 7091 2 677 243 0 0 0 chr9 12181521 12181548 -111894624 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 677 352 302 16 0 chr9 12181555 12181684 -111894488 + Lx9 LINE L1 7503 7633 -11 2 677 191 61 0 29 chr9 12181718 12181752 -111894420 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2 677 1107 108 0 0 chr9 12181767 12181915 -111894257 - B1_Mus1 SINE Alu 0 148 1 2 677 6026 110 55 3 chr9 12182211 12183133 -111893039 + Lx3_Mus LINE L1 6032 7001 -8 2 677 5428 118 73 6 chr9 12183235 12183854 -111892318 + L1_Mus2 LINE L1 423 1104 -5534 2 677 577 0 0 27 chr9 12183854 12183929 -111892243 + (GAAA)n Simple_repeat Simple_repeat 3 75 0 2 677 26189 127 43 23 chr9 12183929 12184397 -111891775 + L1_Mus2 LINE L1 1105 1564 -4319 2 677 194 81 27 0 chr9 12184397 12184434 -111891738 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 677 26189 138 9 42 chr9 12184434 12185412 -111890760 + L1_Mus2 LINE L1 1565 2522 -3361 2 677 2933 61 45 0 chr9 12185412 12185791 -111890381 + MTA_Mm LTR MaLR 1 396 0 2 677 8611 52 11 1 chr9 12185791 12186878 -111889294 + MTA_Mm-int LTR MaLR 1 1098 0 2 677 3229 48 5 0 chr9 12186878 12187270 -111888902 + MTA_Mm LTR MaLR 1 394 -2 2 84 26189 132 9 38 chr9 12187270 12190876 -111885296 + L1_Mus2 LINE L1 2523 6001 -565 2 678 6001 111 21 44 chr9 12190873 12191832 -111884340 + L1_Mus3 LINE L1 5700 6636 -2 2 678 29 0 0 0 chr9 12192988 12193017 -111883155 + AT_rich Low_complexity Low_complexity 1 29 0 2 678 321 348 72 22 chr9 12193652 12193790 -111882382 + RSINE1 SINE B4 2 146 -19 2 678 12425 182 66 9 chr9 12195257 12197969 -111878203 - Lx2B LINE L1 -4 6996 4127 2 678 873 29 0 0 chr9 12197969 12198073 -111878099 + (TC)n Simple_repeat Simple_repeat 1 104 0 2 678 12425 172 23 12 chr9 12198073 12198889 -111877283 - Lx2B LINE L1 -1751 4126 3306 2 678 24 0 0 0 chr9 12198918 12198942 -111877230 + AT_rich Low_complexity Low_complexity 1 24 0 2 678 939 192 16 6 chr9 12199888 12200071 -111876101 + B2_Mm2 SINE B2 2 186 -9 2 678 1140 58 0 0 chr9 12200117 12200255 -111875917 - B1_Mus1 SINE Alu -10 138 1 2 678 261 315 53 44 chr9 12200972 12201085 -111875087 - PB1D10 SINE Alu -3 114 1 2 678 21 0 0 0 chr9 12201587 12201608 -111874564 + AT_rich Low_complexity Low_complexity 1 21 0 2 678 321 225 0 0 chr9 12201902 12201991 -111874181 + CT-rich Low_complexity Low_complexity 2 90 0 2 678 869 176 90 82 chr9 12202128 12202512 -111873660 - RLTRETN_Mm LTR ERVK 0 393 1 2 678 1376 71 22 0 chr9 12202526 12202709 -111873463 - B2_Mm2 SINE B2 -8 187 1 2 678 358 371 87 78 chr9 12203303 12203843 -111872329 - MLT-int LTR MaLR -98 1637 1093 2 678 495 60 0 0 chr9 12204620 12204687 -111871485 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 678 24 32 0 0 chr9 12204758 12204789 -111871383 + AT_rich Low_complexity Low_complexity 1 31 0 2 678 512 239 26 17 chr9 12205232 12205347 -111870825 - B1F2 SINE Alu -5 144 29 2 678 284 269 85 25 chr9 12205811 12205929 -111870243 + MTE-int LTR MaLR 27 151 -1429 2 678 734 84 0 9 chr9 12205933 12206041 -111870131 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 2 678 330 26 0 0 chr9 12206041 12206080 -111870092 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 678 591 270 67 35 chr9 12206101 12206422 -111869750 - Lx3C LINE L1 -7 6993 6684 2 678 1165 364 138 42 chr9 12206422 12207404 -111868768 + MTE-int LTR MaLR 141 1217 -363 2 678 224 77 0 25 chr9 12208190 12208230 -111867942 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 678 517 301 55 80 chr9 12208255 12208493 -111867679 - Lx5 LINE L1 -3 7047 6816 2 678 236 193 79 67 chr9 12208493 12208582 -111867590 + Charlie12 DNA MER1_type 2627 2716 -157 2 678 2596 266 25 11 chr9 12208582 12209232 -111866940 - Lx5 LINE L1 -327 6723 6065 2 678 1865 189 6 3 chr9 12209238 12209577 -111866595 - ORR1A1 LTR MaLR -6 340 1 2 678 790 183 15 0 chr9 12209577 12209708 -111866464 - ORR1A1-int LTR MaLR 0 1963 1831 2 678 1535 204 64 5 chr9 12209693 12210082 -111866090 - ORR1A1-int LTR MaLR -827 1136 725 2 678 788 206 18 12 chr9 12210102 12210269 -111865903 - ORR1A1 LTR MaLR -47 280 113 2 678 1875 201 22 0 chr9 12210269 12210633 -111865539 - Lx5 LINE L1 -59 5818 5447 2 678 252 0 0 0 chr9 12210633 12210661 -111865511 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 678 1151 312 33 128 chr9 12210661 12210712 -111865460 - L1_Mur2 LINE L1 -396 5451 5420 2 678 3042 106 22 4 chr9 12210712 12211166 -111865006 - L1_Mus3 LINE L1 -3 6635 6174 2 678 4279 221 65 20 chr9 12211166 12212386 -111863786 - L1_Mur2 LINE L1 -446 5431 4290 2 678 1229 172 31 47 chr9 12212386 12212642 -111863530 - ORR1B1-int LTR MaLR -1711 252 1 2 678 1588 166 150 26 chr9 12212642 12212989 -111863183 - ORR1B1 LTR MaLR 0 394 5 2 678 259 397 88 5 chr9 12213070 12213285 -111862887 - L4 LINE RTE -268 1761 1529 2 678 1691 248 155 25 chr9 12213773 12214609 -111861563 + L1VL2 LINE L1 208 1022 -5313 2 678 1938 251 46 12 chr9 12214640 12215119 -111861053 - RLTR17 LTR ERVK -74 618 124 2 678 387 0 0 0 chr9 12215119 12215162 -111861010 + (TTA)n Simple_repeat Simple_repeat 3 45 0 2 678 2635 191 10 71 chr9 12215171 12215844 -111860328 - RMER3D-int LTR ERVK -1199 1643 492 2 678 1152 195 44 48 chr9 12215943 12216100 -111860072 - RMER3D-int LTR ERVK -2301 541 416 2 678 2931 43 93 0 chr9 12216100 12216476 -111859696 - IAPLTR2a LTR ERVK 0 411 1 2 678 1152 245 88 71 chr9 12216476 12216867 -111859305 - RMER3D-int LTR ERVK -2427 415 10 2 678 3018 208 30 7 chr9 12216906 12217505 -111858667 + RLTR17 LTR ERVK 19 631 -61 2 678 10165 170 38 11 chr9 12217552 12219036 -111857136 + MusHAL1 LINE L1 109 1624 -1088 2 678 357 24 0 0 chr9 12219036 12219078 -111857094 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 678 339 25 0 0 chr9 12219078 12219117 -111857055 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 678 10165 170 38 11 chr9 12219117 12219720 -111856452 + MusHAL1 LINE L1 1625 2253 -459 2 678 6680 129 4 24 chr9 12219717 12220821 -111855351 + L1_Mm LINE L1 4447 5528 -355 2 678 4076 176 10 19 chr9 12220829 12221641 -111854531 + L1_Mur2 LINE L1 3460 4264 -1613 2 678 2959 56 0 0 chr9 12221641 12221998 -111854174 - IAPEY2_LTR LTR ERVK 0 357 1 2 678 2753 138 17 31 chr9 12221998 12222651 -111853521 - IAPEY3-int LTR ERVK 0 7581 6984 2 678 181 377 44 0 chr9 12222651 12222765 -111853407 - L3b LINE CR1 -29 453 335 2 678 3532 62 5 0 chr9 12222780 12223216 -111852956 - IAPEY3-int LTR ERVK -4991 2689 2252 2 678 9261 130 14 21 chr9 12223205 12224833 -111851339 - IAPEY3-int LTR ERVK -5698 1982 1 2 678 2959 54 0 0 chr9 12224838 12225192 -111850980 - IAPEY2_LTR LTR ERVK -3 354 1 2 678 8051 179 18 30 chr9 12225192 12227959 -111848213 + Lx2B LINE L1 4259 6994 -6 2 678 1268 296 117 8 chr9 12227968 12228483 -111847689 - RCHARR1 DNA MER1_type -354 620 50 2 678 279 0 0 0 chr9 12229354 12229385 -111846787 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 678 306 0 0 0 chr9 12229385 12229418 -111846754 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 678 247 428 26 13 chr9 12229473 12229627 -111846545 + LTR16B2 LTR ERVL 142 297 -165 2 678 792 252 131 52 chr9 12229679 12229910 -111846262 - ORR1D2 LTR MaLR 0 370 135 2 678 186 43 0 0 chr9 12229910 12229933 -111846239 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 678 5826 107 16 1 chr9 12229936 12230801 -111845371 - L1_Mus3 LINE L1 -17 6621 5744 2 678 792 252 131 52 chr9 12230801 12230908 -111845264 - ORR1D2 LTR MaLR -236 134 3 2 678 318 93 67 0 chr9 12232263 12232338 -111843834 - Lx3C LINE L1 0 6976 6897 2 678 24 0 0 0 chr9 12233620 12233644 -111842528 + AT_rich Low_complexity Low_complexity 1 24 0 2 678 474 65 0 0 chr9 12234590 12234652 -111841520 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2 678 22 0 0 0 chr9 12235001 12235023 -111841149 + AT_rich Low_complexity Low_complexity 1 22 0 2 678 846 314 46 20 chr9 12236792 12237094 -111839078 - ORR1D2 LTR MaLR -60 310 1 2 678 21 0 0 0 chr9 12237156 12237177 -111838995 + AT_rich Low_complexity Low_complexity 1 21 0 2 678 2770 21 3 0 chr9 12237662 12237980 -111838192 + L1_Mm LINE L1 5268 5586 -297 2 678 8045 45 4 2 chr9 12237980 12238973 -111837199 + L1Md_F2 LINE L1 5587 6581 -1 2 678 202 279 18 46 chr9 12240079 12240188 -111835984 + CT-rich Low_complexity Low_complexity 2 107 0 2 678 278 328 50 16 chr9 12240206 12240327 -111835845 - ID_B1 SINE B4 -21 203 79 2 678 375 305 0 0 chr9 12240550 12240655 -111835517 - ID_B1 SINE B4 -4 220 116 2 678 324 0 0 0 chr9 12241476 12241512 -111834660 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 678 609 144 0 0 chr9 12241541 12241659 -111834513 + (TA)n Simple_repeat Simple_repeat 2 119 0 2 678 2264 44 0 0 chr9 12242747 12243020 -111833152 - L1Md_T LINE L1 -3 6579 6307 2 678 210 366 0 0 chr9 12243052 12243123 -111833049 - MIRb SINE MIR -6 262 192 2 678 237 108 0 0 chr9 12243531 12243568 -111832604 + (CAA)n Simple_repeat Simple_repeat 2 38 0 2 678 1042 211 83 0 chr9 12244401 12244629 -111831543 - RMER20B LTR ERVK -84 543 297 2 678 376 46 30 15 chr9 12244629 12244695 -111831477 + L1Md_F3 LINE L1 6488 6554 -30 2 678 895 111 82 0 chr9 12245803 12245938 -111830234 + B1_Mm SINE Alu 1 146 -1 2 678 189 121 0 0 chr9 12246735 12246768 -111829404 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2 678 579 318 48 79 chr9 12247139 12247515 -111828657 + MTE2a LTR MaLR 1 376 -43 2 678 216 0 0 0 chr9 12247515 12247539 -111828633 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2 678 579 314 33 73 chr9 12247539 12247576 -111828596 + MTE2a LTR MaLR 345 379 0 2 678 23 0 0 0 chr9 12248062 12248085 -111828087 + AT_rich Low_complexity Low_complexity 1 23 0 2 678 250 231 49 41 chr9 12248251 12248373 -111827799 - Lx9 LINE L1 -29 7615 7493 2 678 532 293 92 53 chr9 12248403 12248684 -111827488 - Lx9 LINE L1 -216 7428 7137 2 678 25 31 0 0 chr9 12249360 12249392 -111826780 + AT_rich Low_complexity Low_complexity 1 32 0 3 678 408 40 0 0 chr9 12249501 12249551 -111826621 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 678 225 224 116 125 chr9 12249551 12249663 -111826509 - Lx9 LINE L1 -190 7454 7344 3 678 2426 59 19 3 chr9 12249737 12250062 -111826110 + L1Md_F2 LINE L1 6252 6581 -1 3 678 328 268 11 11 chr9 12250114 12250201 -111825971 + Lx9 LINE L1 7078 7164 -480 3 678 243 202 0 0 chr9 12251597 12251681 -111824491 + A-rich Low_complexity Low_complexity 1 84 0 3 678 774 252 0 86 chr9 12252014 12252248 -111823924 - B3 SINE B2 -2 214 1 3 678 22 0 0 0 chr9 12252978 12253000 -111823172 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 1380 228 13 3 chr9 12253957 12254256 -111821916 - Lx5 LINE L1 -8 7042 6741 3 678 2004 191 55 15 chr9 12254323 12254721 -111821451 - Lx5 LINE L1 -299 6751 6338 3 678 1138 270 48 51 chr9 12254749 12255218 -111820954 - RLTR11A LTR ERVK -17 511 7 3 678 5820 178 13 4 chr9 12255225 12256671 -111819501 - Lx5 LINE L1 -714 6336 4862 3 678 2997 186 22 28 chr9 12256687 12257109 -111819063 + L1_Mur2 LINE L1 3317 3727 -2150 3 678 3452 43 30 9 chr9 12257109 12257536 -111818636 + RLTR10C LTR ERVK 1 436 0 3 678 2997 186 22 28 chr9 12257536 12257750 -111818422 + L1_Mur2 LINE L1 3728 3949 -1928 3 678 727 313 67 22 chr9 12257802 12258070 -111818102 + B4A SINE B4 3 282 -10 3 678 474 18 0 0 chr9 12258076 12258131 -111818041 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 678 1947 217 8 35 chr9 12258149 12258546 -111817626 - ORR1B1 LTR MaLR -8 386 1 3 678 1094 249 124 27 chr9 12258560 12258932 -111817240 + MTD LTR MaLR 10 417 -2 3 678 1513 202 58 61 chr9 12259303 12259682 -111816490 - ORR1C1 LTR MaLR 0 378 1 3 678 559 311 134 46 chr9 12259709 12259992 -111816180 - RMER15 LTR ERVL -13 562 255 3 678 210 138 60 30 chr9 12261181 12261248 -111814924 + T-rich Low_complexity Low_complexity 3 71 0 3 678 191 379 35 35 chr9 12261487 12261632 -111814540 + L2 LINE L2 2755 2899 -520 3 678 247 170 18 70 chr9 12262034 12262091 -111814081 + B3A SINE B2 17 70 -128 3 678 211 200 0 0 chr9 12262111 12262151 -111814021 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 678 248 382 32 13 chr9 12262587 12262741 -111813431 - Tigger5 DNA MER2_type -2152 254 98 3 678 356 218 35 10 chr9 12262730 12262829 -111813343 - MTEa LTR MaLR -276 103 1 3 678 393 22 0 0 chr9 12263552 12263598 -111812574 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 678 290 271 69 0 chr9 12264004 12264148 -111812024 - L1MD3 LINE L1 -18 7977 7824 3 678 801 323 141 39 chr9 12264293 12264666 -111811506 - MTD LTR MaLR -2 377 1 3 678 845 138 0 7 chr9 12265262 12265408 -111810764 + (GAGAA)n Simple_repeat Simple_repeat 3 147 0 3 678 5692 57 6 3 chr9 12265409 12266130 -111810042 + L1Md_F2 LINE L1 5841 6563 -19 3 678 810 31 0 0 chr9 12266178 12266275 -111809897 + (GAGAA)n Simple_repeat Simple_repeat 4 100 0 3 678 781 38 19 0 chr9 12266690 12266795 -111809377 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 678 222 176 0 0 chr9 12267299 12267350 -111808822 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 678 552 350 124 21 chr9 12267353 12267595 -111808577 - B4A SINE B4 0 292 26 3 678 297 358 89 34 chr9 12267959 12268196 -111807976 + Tigger5 DNA MER2_type 2157 2406 0 3 678 238 121 0 0 chr9 12268714 12268747 -111807425 - URR1B DNA MER1_type 0 225 193 3 678 1647 94 15 23 chr9 12268747 12269009 -111807163 - L1Md_F2 LINE L1 -2 6580 6321 3 678 330 26 0 0 chr9 12269247 12269286 -111806886 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 678 878 289 92 35 chr9 12269292 12269607 -111806565 - Lx8 LINE L1 -142 7331 6999 3 678 1915 103 31 25 chr9 12269686 12270006 -111806166 + RLTRETN_Mm LTR ERVK 1 322 0 3 678 14276 21 12 2 chr9 12270006 12271650 -111804522 + ETnERV2-int LTR ERVK 1 1660 -1654 3 678 18950 151 22 20 chr9 12271883 12276763 -111799409 + ETnERV2-int LTR ERVK 1658 7202 -204 3 678 1865 115 28 22 chr9 12276763 12277083 -111799089 + RLTRETN_Mm LTR ERVK 1 322 0 3 678 435 261 48 52 chr9 12277334 12277585 -111798587 - L1M2 LINE L1 -1379 4764 4515 3 678 2207 90 88 75 chr9 12277614 12277998 -111798174 - L1_Mus2 LINE L1 0 6566 6178 3 678 421 262 123 35 chr9 12278295 12278856 -111797316 + L1_Mur3 LINE L1 3074 3668 -2212 3 678 397 332 60 23 chr9 12279100 12279316 -111796856 - L1M2 LINE L1 -3476 2667 2444 3 678 1952 182 8 11 chr9 12279330 12279691 -111796481 - RMER1A Other Other -5 1025 666 3 678 387 224 128 18 chr9 12279745 12279854 -111796318 + RMER4B LTR ERVK 463 583 -2 3 678 268 268 99 0 chr9 12280820 12280891 -111795281 - RMER12 LTR ERVK -499 823 746 3 678 34172 40 50 3 chr9 12281712 12287606 -111788566 - L1Md_T LINE L1 0 6585 312 3 678 648 296 89 29 chr9 12288217 12288575 -111787597 + MLT2D LTR ERVL 2 390 -7 3 678 198 0 0 0 chr9 12289374 12289396 -111786776 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 678 301 330 198 18 chr9 12289725 12289947 -111786225 + B4 SINE B4 29 290 -2 3 678 262 284 11 0 chr9 12289950 12290038 -111786134 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 678 248 53 26 0 chr9 12291833 12291871 -111784301 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 678 396 0 0 0 chr9 12292208 12292252 -111783920 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 678 1626 237 30 25 chr9 12292264 12292662 -111783510 - Lx4A LINE L1 -18 7040 6641 3 678 2194 199 6 19 chr9 12292658 12293130 -111783042 - L1_Mur2 LINE L1 -439 5438 4973 3 678 15991 149 122 18 chr9 12293551 12296117 -111780055 - L1_Mur2 LINE L1 -902 4975 2070 3 678 423 0 0 0 chr9 12296117 12296164 -111780008 + (TGG)n Simple_repeat Simple_repeat 1 47 0 3 678 15991 149 122 18 chr9 12296164 12296525 -111779647 - L1_Mur2 LINE L1 -3808 2069 1723 3 678 652 284 50 48 chr9 12296525 12296883 -111779289 + RLTR10D LTR ERVK 1 359 0 3 678 15991 179 60 22 chr9 12296883 12297998 -111778174 - L1_Mur2 LINE L1 -4155 1722 583 3 678 648 280 21 5 chr9 12298379 12298566 -111777606 + RMER5 LTR ERV1 331 520 -14 3 678 269 26 0 26 chr9 12298610 12298649 -111777523 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 678 1077 71 0 28 chr9 12299603 12299747 -111776425 + B1_Mm SINE Alu 1 140 -7 3 678 219 69 0 0 chr9 12299765 12299794 -111776378 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 3 678 258 106 0 0 chr9 12300003 12300050 -111776122 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 3 678 360 59 0 0 chr9 12300051 12300102 -111776070 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 678 1182 182 4 49 chr9 12300105 12300253 -111775919 - Lx2 LINE L1 -1 6996 6859 3 678 5165 111 71 7 chr9 12300253 12301087 -111775085 + RMER17D LTR ERVK 1 887 -2 3 678 1182 182 4 49 chr9 12301087 12301181 -111774991 - Lx2 LINE L1 -139 6858 6765 3 678 3682 139 25 3 chr9 12301170 12301776 -111774396 - Lx2 LINE L1 -352 6645 6027 3 678 2300 151 10 2 chr9 12301777 12302175 -111773997 + L1_Mm LINE L1 3886 4286 -1597 3 678 2149 156 46 3 chr9 12302174 12302565 -111773607 - Lx3_Mus LINE L1 -674 6335 5928 3 678 3459 117 33 0 chr9 12302567 12303078 -111773094 + Lx3_Mus LINE L1 6308 6835 -174 3 678 944 176 142 0 chr9 12303076 12303280 -111772892 + L1_Mur1 LINE L1 5078 5310 -576 3 678 4832 101 19 16 chr9 12303275 12304219 -111771953 - L1_Mus2 LINE L1 -521 6045 5099 3 678 29015 101 17 1 chr9 12304242 12306054 -111770118 - L1_Mus1 LINE L1 -1 6566 4736 3 678 303 0 64 0 chr9 12306054 12306101 -111770071 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 678 29015 159 39 22 chr9 12306101 12310666 -111765506 - L1_Mus1 LINE L1 -1148 4735 217 3 678 2244 108 0 6 chr9 12310662 12310996 -111765176 - L1_Mm LINE L1 -765 5118 4787 3 678 3806 133 14 0 chr9 12310997 12311585 -111764587 + L1_Mus3 LINE L1 6040 6635 -3 3 678 3056 154 24 1 chr9 12311590 12312311 -111763861 + Lx2 LINE L1 5285 6017 -980 3 678 479 45 15 0 chr9 12312326 12312392 -111763780 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 678 209 33 33 0 chr9 12312393 12312423 -111763749 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 3 678 266 177 51 0 chr9 12312519 12312598 -111763574 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 678 227 191 21 0 chr9 12314306 12314353 -111761819 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 678 459 60 39 29 chr9 12314385 12314488 -111761684 + (TTTTG)n Simple_repeat Simple_repeat 2 105 0 3 678 332 287 98 54 chr9 12314664 12314848 -111761324 - B3A SINE B2 -5 193 2 3 678 5206 166 26 45 chr9 12314885 12315926 -111760246 - Lx2B LINE L1 -10 6990 5970 3 678 19105 186 30 32 chr9 12315937 12318281 -111757891 - Lx2B LINE L1 -22 6978 4650 3 678 279 0 0 0 chr9 12318281 12318312 -111757860 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 678 19105 192 28 14 chr9 12318312 12319927 -111756245 - Lx2B LINE L1 -1237 4649 3013 3 678 1190 124 32 5 chr9 12319927 12320113 -111756059 - B2_Mm1t SINE B2 -2 191 1 3 84 19105 192 28 14 chr9 12320113 12321459 -111754713 - Lx2B LINE L1 -2874 3012 1632 3 679 1145 234 14 7 chr9 12321455 12321793 -111754379 - L1VL4 LINE L1 -5542 793 443 3 679 319 294 46 70 chr9 12321801 12322119 -111754053 - L1VL4 LINE L1 -3104 512 239 3 679 305 336 60 15 chr9 12322618 12322751 -111753421 + MLT1A1 LTR MaLR 268 406 -2 3 679 562 212 121 0 chr9 12323746 12323878 -111752294 + B1_Mur4 SINE Alu 3 150 0 3 679 27 29 0 0 chr9 12324069 12324103 -111752069 + AT_rich Low_complexity Low_complexity 1 34 0 3 679 2396 227 41 45 chr9 12324970 12325199 -111750973 - RLTR1D LTR ERV1 0 605 376 3 679 7290 57 3 0 chr9 12325199 12326089 -111750083 + RLTR13B1 LTR ERVK 1 893 0 3 679 2396 227 41 45 chr9 12326089 12326463 -111749709 - RLTR1D LTR ERV1 -230 375 4 3 679 3609 242 18 0 chr9 12326465 12327249 -111748923 - MMERGLN-int LTR ERV1 0 7556 6759 3 679 30793 93 20 16 chr9 12327257 12332196 -111743976 + L1Md_F2 LINE L1 333 5290 -593 3 679 591 15 0 0 chr9 12332196 12332264 -111743908 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 679 30793 76 19 14 chr9 12332264 12332559 -111743613 + L1Md_F2 LINE L1 5291 5585 -298 3 679 7561 73 3 1 chr9 12332559 12333553 -111742619 + L1Md_F2 LINE L1 5587 6582 0 3 679 2814 238 142 8 chr9 12334799 12335647 -111740525 - Lx4B LINE L1 -2 7056 6096 3 679 1430 165 69 18 chr9 12336073 12336406 -111739766 - Lx4B LINE L1 -950 6108 5759 3 679 24 0 0 0 chr9 12337662 12337686 -111738486 + AT_rich Low_complexity Low_complexity 1 24 0 3 679 488 332 60 5 chr9 12337810 12338010 -111738162 + ID_B1 SINE B4 8 218 -6 3 679 22 0 0 0 chr9 12339983 12340005 -111736167 + AT_rich Low_complexity Low_complexity 1 22 0 3 679 1008 142 0 0 chr9 12340343 12340491 -111735681 - B1_Mus1 SINE Alu 0 148 1 3 679 917 280 91 50 chr9 12341071 12341435 -111734737 + MTEa LTR MaLR 1 379 0 3 679 279 0 0 0 chr9 12341503 12341534 -111734638 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 679 411 38 0 0 chr9 12341535 12341588 -111734584 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 3 679 1682 264 80 115 chr9 12341611 12342535 -111733637 - RMER17B LTR ERVK -66 892 1 3 679 387 105 0 0 chr9 12343149 12343206 -111732966 + (CATA)n Simple_repeat Simple_repeat 1 57 0 4 679 519 338 92 21 chr9 12344835 12345074 -111731098 + MTEa LTR MaLR 5 260 -119 4 679 306 342 59 34 chr9 12345172 12345493 -111730679 + Lx8 LINE L1 6892 7220 -253 4 679 251 182 0 35 chr9 12345560 12345617 -111730555 + A-rich Low_complexity Low_complexity 5 59 0 4 679 279 173 0 0 chr9 12346805 12346857 -111729315 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 679 235 330 19 39 chr9 12347214 12347318 -111728854 + MLT1D LTR MaLR 251 352 -153 4 679 1964 246 51 31 chr9 12347465 12348232 -111727940 - Lx5 LINE L1 -446 6604 5793 4 679 315 0 0 0 chr9 12348241 12348276 -111727896 + (TTA)n Simple_repeat Simple_repeat 1 35 0 4 679 449 206 59 40 chr9 12348276 12348428 -111727744 - Lx4A LINE L1 -11 7047 6893 4 679 251 228 70 0 chr9 12348429 12348486 -111727686 - RLTR31_Mur LTR ERVK -2 551 491 4 679 1871 128 110 28 chr9 12348757 12349120 -111727052 - BGLII_B LTR ERVK -48 393 1 4 679 21176 172 53 9 chr9 12349121 12350610 -111725562 - Lx4A LINE L1 -160 6898 5340 4 679 2792 22 0 3 chr9 12350610 12350933 -111725239 - RLTRETN_Mm LTR ERVK 0 322 1 4 679 21176 168 39 20 chr9 12350933 12354130 -111722042 - Lx4A LINE L1 -538 5339 2068 4 679 327 104 0 0 chr9 12354130 12354178 -111721994 + (TGG)n Simple_repeat Simple_repeat 1 48 0 4 679 21176 192 50 25 chr9 12354178 12355561 -111720611 - Lx4A LINE L1 -3810 2067 655 4 679 420 91 0 0 chr9 12357853 12357919 -111718253 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 679 404 37 0 18 chr9 12357919 12357974 -111718198 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 679 211 128 26 0 chr9 12358232 12358271 -111717901 + CT-rich Low_complexity Low_complexity 1 40 0 4 679 262 380 86 52 chr9 12359368 12359601 -111716571 - MER70A LTR ERVL 0 472 232 4 679 451 394 20 36 chr9 12360423 12360779 -111715393 - Lx8 LINE L1 -10 7463 7114 4 679 22440 31 1 0 chr9 12360822 12364312 -111711860 - L1Md_T LINE L1 -1 6581 3090 4 679 2792 101 22 83 chr9 12364312 12364818 -111711354 - IAPLTR2_Mm LTR ERVK 0 475 1 4 679 5802 45 4 12 chr9 12364820 12365575 -111710597 - IAPEz-int LTR ERVK -2 6479 5731 4 679 1969 90 0 0 chr9 12365569 12365847 -111710325 - IAPEz-int LTR ERVK -4845 1636 1359 4 679 3391 66 1 16 chr9 12365847 12366425 -111709747 - IAPEz-int LTR ERVK -5819 662 168 4 679 248 309 0 0 chr9 12366425 12366480 -111709692 - RLTR27 LTR ERVK -34 275 221 4 679 838 120 27 87 chr9 12366480 12366663 -111709509 - IAPEz-int LTR ERVK -6288 193 22 4 679 303 92 0 85 chr9 12366741 12366800 -111709372 - IAPEz-int LTR ERVK -1931 56 3 4 679 2601 92 31 161 chr9 12366802 12367348 -111708824 - IAPLTR2_Mm LTR ERVK 0 475 1 4 679 14641 39 13 20 chr9 12367348 12370014 -111706158 - L1Md_A LINE L1 -2788 3095 449 4 679 999 137 0 0 chr9 12370117 12370263 -111705909 + B1_Mus1 SINE Alu 1 146 -2 4 679 3045 56 43 0 chr9 12370484 12370878 -111705294 - RLTR10A LTR ERVK 0 411 1 4 679 531 165 0 0 chr9 12371182 12371291 -111704881 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 679 439 326 0 8 chr9 12372956 12373086 -111703086 + B3 SINE B2 52 180 -36 4 679 36702 8 0 0 chr9 12373149 12378728 -111697444 + L1Md_A LINE L1 7 5586 -297 4 679 9062 3 0 0 chr9 12378728 12379724 -111696448 + L1Md_A LINE L1 5587 6582 0 4 679 244 148 109 47 chr9 12380029 12380093 -111696079 - MLT1B LTR MaLR -21 369 302 4 679 226 159 30 45 chr9 12380901 12380967 -111695205 + Lx4B LINE L1 6918 6982 -76 4 679 198 141 14 40 chr9 12381647 12381721 -111694451 + (TTTG)n Simple_repeat Simple_repeat 2 73 0 4 679 1039 181 6 6 chr9 12381985 12382168 -111694004 + URR1A DNA MER1_type 2 184 -42 4 679 346 382 0 84 chr9 12383783 12383872 -111692300 + RSINE1 SINE B4 14 96 -69 4 679 1669 215 41 200 chr9 12383872 12384598 -111691574 - RMER19C LTR ERVK 0 611 1 4 679 346 382 0 84 chr9 12384598 12384674 -111691498 + RSINE1 SINE B4 97 165 0 4 679 29 0 0 0 chr9 12384707 12384736 -111691436 + AT_rich Low_complexity Low_complexity 1 29 0 4 679 507 281 87 12 chr9 12384864 12385037 -111691135 + B3 SINE B2 1 186 -30 4 679 338 329 14 35 chr9 12385263 12385405 -111690767 + MLT1A1 LTR MaLR 270 408 0 4 679 432 37 0 0 chr9 12385731 12385785 -111690387 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 679 414 292 108 0 chr9 12385794 12385914 -111690258 - RSINE1 SINE B4 -22 143 11 4 679 328 230 0 63 chr9 12387425 12387615 -111688557 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 4 679 270 314 16 63 chr9 12387623 12387749 -111688423 + RMER12 LTR ERVK 737 856 -466 4 679 1662 199 14 55 chr9 12388350 12388716 -111687456 + ORR1B1 LTR MaLR 41 391 -3 4 679 7179 229 35 27 chr9 12388719 12388977 -111687195 + ORR1B1-int LTR MaLR 1 270 -1693 4 679 207 0 0 0 chr9 12388977 12389000 -111687172 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 679 7179 229 37 29 chr9 12389000 12390724 -111685448 + ORR1B1-int LTR MaLR 271 1770 -193 4 679 1263 252 108 21 chr9 12390886 12391211 -111684961 + ORR1B1 LTR MaLR 13 365 -14 4 679 843 175 81 12 chr9 12392730 12392903 -111683269 - RMER19B LTR ERVK 0 902 718 4 679 503 151 11 0 chr9 12392918 12393011 -111683161 + GA-rich Low_complexity Low_complexity 2 95 0 4 679 419 399 60 36 chr9 12393090 12393342 -111682830 + B4A SINE B4 3 260 -32 4 679 288 0 0 0 chr9 12393385 12393417 -111682755 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 679 722 274 9 14 chr9 12393436 12393651 -111682521 + B3 SINE B2 1 214 -2 4 679 391 306 20 40 chr9 12394726 12394876 -111681296 + MLT2C1 LTR ERVL 1 147 -250 4 679 377 198 17 33 chr9 12396863 12396983 -111679189 - Lx9 LINE L1 -6 7638 7521 4 679 21 0 0 0 chr9 12397757 12397778 -111678394 + AT_rich Low_complexity Low_complexity 1 21 0 4 679 242 125 21 0 chr9 12399076 12399124 -111677048 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 679 225 186 0 0 chr9 12399135 12399178 -111676994 + (TATG)n Simple_repeat Simple_repeat 3 45 0 4 679 465 327 37 37 chr9 12399178 12399340 -111676832 - RSINE1 SINE B4 0 165 4 4 679 200 181 12 35 chr9 12399722 12399808 -111676364 + GA-rich Low_complexity Low_complexity 2 85 0 4 679 593 306 14 53 chr9 12399839 12400043 -111676129 + B3 SINE B2 4 197 -1 4 679 299 374 0 42 chr9 12400083 12400273 -111675899 - B3A SINE B2 -16 182 1 4 679 609 294 63 88 chr9 12400445 12400762 -111675410 + MTEa LTR MaLR 71 379 0 4 679 2097 126 53 39 chr9 12402083 12402519 -111673653 - RMER17B LTR ERVK -474 484 1 4 679 774 225 10 73 chr9 12402837 12403029 -111673143 + ORR1C1 LTR MaLR 1 180 -198 4 679 1051 103 7 0 chr9 12403030 12403175 -111672997 - B1_Mm SINE Alu 0 147 2 4 679 1407 219 62 0 chr9 12405186 12405484 -111670688 - Lx2 LINE L1 -561 6899 6480 4 679 931 264 36 88 chr9 12405484 12405734 -111670438 + Lx5 LINE L1 6797 7015 -35 4 679 1305 196 98 66 chr9 12405753 12406058 -111670114 + ORR1C1 LTR MaLR 13 327 -51 4 679 796 301 51 80 chr9 12407222 12407558 -111668614 + MTEb LTR MaLR 1 326 -53 4 679 191 242 28 120 chr9 12407646 12407754 -111668418 + L2 LINE L2 2758 2855 -564 4 679 856 281 78 22 chr9 12407812 12408169 -111668003 + MTEa LTR MaLR 3 379 0 4 679 36229 37 3 7 chr9 12409141 12414397 -111661775 + L1Md_T LINE L1 361 5586 -297 4 679 8292 37 1 4 chr9 12414397 12415396 -111660776 + L1Md_T LINE L1 5587 6582 0 4 679 26 0 0 0 chr9 12415469 12415495 -111660677 + AT_rich Low_complexity Low_complexity 1 26 0 4 679 1023 25 0 0 chr9 12415495 12415617 -111660555 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 4 679 22 56 0 0 chr9 12415687 12415723 -111660449 + AT_rich Low_complexity Low_complexity 1 36 0 4 679 6136 175 14 23 chr9 12416246 12417797 -111658375 - Lx2 LINE L1 -306 6691 5141 4 679 209 33 33 0 chr9 12417990 12418020 -111658152 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 679 421 342 96 72 chr9 12418102 12418461 -111657711 + ORR1E LTR MaLR 1 367 -3 4 679 498 324 11 22 chr9 12419623 12419806 -111656366 - B3A SINE B2 -16 182 2 4 679 298 289 85 104 chr9 12420571 12420772 -111655400 - MTEb LTR MaLR -13 366 156 4 679 240 200 53 26 chr9 12420964 12421077 -111655095 + (TTATA)n Simple_repeat Simple_repeat 5 120 0 4 679 519 302 0 69 chr9 12421625 12421785 -111654387 + RSINE1 SINE B4 17 165 0 4 679 369 0 0 0 chr9 12422561 12422602 -111653570 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 679 463 319 83 0 chr9 12422762 12422906 -111653266 + B3A SINE B2 10 165 -33 4 679 2219 264 58 38 chr9 12423622 12423983 -111652189 - Lx6 LINE L1 -1115 6345 5973 4 679 4639 122 43 121 chr9 12423983 12424966 -111651206 - RMER17A2 LTR ERVK 0 906 1 4 679 3730 204 77 22 chr9 12424966 12426507 -111649665 - Lx6 LINE L1 -1488 5972 4350 4 679 24 32 0 0 chr9 12426658 12426689 -111649483 + AT_rich Low_complexity Low_complexity 1 31 0 4 679 26 23 0 23 chr9 12426802 12426824 -111649348 + AT_rich Low_complexity Low_complexity 1 22 0 4 679 1179 61 0 0 chr9 12426824 12426971 -111649201 - B1_Mus2 SINE Alu 0 147 1 4 679 26 23 0 23 chr9 12426971 12426992 -111649180 + AT_rich Low_complexity Low_complexity 1 21 0 4 679 251 281 26 9 chr9 12427048 12427163 -111649009 - Lx7 LINE L1 -5 7691 7575 4 679 1169 221 49 29 chr9 12427244 12427551 -111648621 - Lx7 LINE L1 -24 7672 7360 4 679 32 26 0 0 chr9 12427575 12427614 -111648558 + AT_rich Low_complexity Low_complexity 1 39 0 4 679 400 176 8 8 chr9 12428055 12428125 -111648047 + CT-rich Low_complexity Low_complexity 52 121 0 4 679 341 43 21 0 chr9 12428125 12428172 -111648000 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 679 400 176 8 8 chr9 12428172 12428221 -111647951 + polypyrimidine Low_complexity Low_complexity 3 51 0 4 679 252 0 0 0 chr9 12428258 12428286 -111647886 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 4 679 254 234 177 25 chr9 12428305 12428384 -111647788 - ID_B1 SINE B4 -4 220 130 4 679 5907 116 20 17 chr9 12428759 12429242 -111646930 - L1VL4 LINE L1 -1711 1848 1363 4 679 2406 83 0 60 chr9 12429242 12429628 -111646544 - L1Md_F2 LINE L1 0 6582 6220 4 679 5907 121 73 48 chr9 12429628 12430703 -111645469 - L1VL4 LINE L1 -2197 1362 256 4 679 2883 122 26 2 chr9 12430749 12431217 -111644955 + L1_Mus4 LINE L1 6155 6633 -3 4 679 379 326 59 25 chr9 12431340 12431576 -111644596 - MER2 DNA MER2_type -65 280 37 4 679 1624 180 7 10 chr9 12431579 12431876 -111644296 - ORR1A3 LTR MaLR -2 324 29 4 679 2795 72 37 5 chr9 12432083 12432491 -111643681 - BGLII LTR ERVK 0 421 1 4 679 426 20 0 0 chr9 12432986 12433037 -111643135 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 679 248 267 12 0 chr9 12433394 12433469 -111642703 - L1M5 LINE L1 -525 5599 5522 4 679 2079 178 65 10 chr9 12433503 12433900 -111642272 + MTC LTR MaLR 1 419 -2 5 679 278 297 18 26 chr9 12434151 12434265 -111641907 - L1MA9 LINE L1 -31 6281 6169 5 679 234 0 0 0 chr9 12434781 12434807 -111641365 + (T)n Simple_repeat Simple_repeat 1 26 0 5 679 794 241 115 61 chr9 12435043 12435185 -111640987 + MT2A LTR ERVL 26 161 -372 5 679 3340 40 2 0 chr9 12435185 12435580 -111640592 + MTA_Mm LTR MaLR 1 396 0 5 679 794 250 64 76 chr9 12435580 12435845 -111640327 + MT2A LTR ERVL 162 502 -99 5 679 724 153 11 33 chr9 12435845 12436027 -111640145 + (TA)n Simple_repeat Simple_repeat 2 179 0 5 679 945 87 72 0 chr9 12436035 12436173 -111639999 + B1_Mus1 SINE Alu 1 148 0 5 679 205 70 22 44 chr9 12436174 12436219 -111639953 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 679 32636 107 18 28 chr9 12437717 12444034 -111632138 - L1Md_F2 LINE L1 0 6582 312 5 679 3163 47 20 10 chr9 12444034 12444441 -111631731 + IAPLTR2a LTR ERVK 1 411 0 5 679 914 128 25 86 chr9 12444444 12444641 -111631531 + IAPEz-int LTR ERVK 11 195 -6286 5 679 226 321 0 0 chr9 12444641 12444694 -111631478 + RLTR27 LTR ERVK 223 275 -34 5 679 1065 69 4 0 chr9 12444694 12444886 -111631286 + IAPEz-int LTR ERVK 168 319 -6162 5 679 10227 64 41 33 chr9 12444886 12446365 -111629807 + IAPEz-int LTR ERVK 211 1700 -4781 5 679 6049 62 12 11 chr9 12446360 12447186 -111628986 + IAPEz-int LTR ERVK 5653 6479 -2 5 679 3184 45 20 10 chr9 12447188 12447595 -111628577 + IAPLTR2a LTR ERVK 1 411 0 5 679 534 162 10 0 chr9 12447595 12447694 -111628478 - L1VL1 LINE L1 -6129 293 194 5 679 233 146 21 0 chr9 12448249 12448297 -111627875 + CT-rich Low_complexity Low_complexity 3 51 0 5 679 240 143 0 0 chr9 12449195 12449237 -111626935 + (TTTTA)n Simple_repeat Simple_repeat 5 46 0 5 679 3556 239 62 16 chr9 12449434 12450462 -111625710 - Lx5 LINE L1 -5 7045 5970 5 679 390 69 0 0 chr9 12450900 12450958 -111625214 + (TATG)n Simple_repeat Simple_repeat 2 59 0 5 679 635 184 40 0 chr9 12450958 12451083 -111625089 - Lx2B LINE L1 -14 6986 6857 5 84 5193 149 43 10 chr9 12451083 12452193 -111623979 - Lx2B LINE L1 -445 6555 5412 5 680 681 349 65 21 chr9 12453438 12453984 -111622188 + Lx8 LINE L1 6888 7473 0 5 680 3359 40 5 0 chr9 12454169 12454573 -111621599 + L1Md_F2 LINE L1 6165 6570 -12 5 680 252 0 0 0 chr9 12455608 12455636 -111620536 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 680 252 250 16 0 chr9 12456565 12456629 -111619543 + GA-rich Low_complexity Low_complexity 2 66 0 5 680 778 106 15 0 chr9 12456646 12456778 -111619394 + (GA)n Simple_repeat Simple_repeat 1 134 0 5 680 544 345 50 23 chr9 12457846 12458104 -111618068 + RMER15 LTR ERVL 275 539 -36 5 680 21 0 0 0 chr9 12458406 12458427 -111617745 + AT_rich Low_complexity Low_complexity 1 21 0 5 680 363 165 0 0 chr9 12458692 12458777 -111617395 + A-rich Low_complexity Low_complexity 1 85 0 5 680 28038 118 13 16 chr9 12459197 12465385 -111610787 + L1_Mus1 LINE L1 396 6567 0 5 680 2556 203 43 8 chr9 12465556 12465643 -111610529 - RLTR20C LTR ERVK 0 534 445 5 680 543 16 0 0 chr9 12465643 12465707 -111610465 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 680 2556 203 43 8 chr9 12465707 12466135 -111610037 - RLTR20C LTR ERVK -90 444 1 5 680 207 0 0 0 chr9 12466582 12466605 -111609567 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 680 607 307 18 0 chr9 12467097 12467260 -111608912 + B3 SINE B2 46 211 -5 5 680 854 300 71 27 chr9 12467379 12467715 -111608457 + Lx8 LINE L1 6942 7292 -181 5 680 225 0 0 0 chr9 12468655 12468680 -111607492 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 680 837 301 86 54 chr9 12468758 12469144 -111607028 + MTD LTR MaLR 3 400 -19 5 680 2199 91 165 3 chr9 12469148 12469500 -111606672 - IAPLTR2a LTR ERVK -2 409 1 5 680 6006 36 4 18 chr9 12469502 12470284 -111605888 - IAPEz-int LTR ERVK -2 6479 5709 5 680 2948 22 0 0 chr9 12470275 12470632 -111605540 - IAPEz-int LTR ERVK -2124 4357 4001 5 680 368 89 0 0 chr9 12470630 12470686 -111605486 - IAPEz-int LTR ERVK -3707 2774 2719 5 680 16880 57 30 20 chr9 12470685 12473015 -111603157 - IAPEz-int LTR ERVK -4136 2345 3 5 680 2199 91 165 3 chr9 12473022 12473374 -111602798 - IAPLTR2a LTR ERVK -2 409 1 5 680 542 266 0 88 chr9 12473660 12473854 -111602318 + Lx4A LINE L1 6866 7042 -16 5 680 560 217 7 0 chr9 12473861 12474004 -111602168 + GA-rich Low_complexity Low_complexity 3 146 0 5 680 2024 218 44 68 chr9 12474662 12475061 -111601111 - RMER6D LTR ERVK 0 720 341 5 680 486 0 0 0 chr9 12475061 12475115 -111601057 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 5 680 2024 218 44 68 chr9 12475115 12475243 -111600929 - RMER6D LTR ERVK -380 340 206 5 680 3607 120 0 2 chr9 12475243 12475794 -111600378 + L1_Mus4 LINE L1 6066 6615 -21 5 680 414 0 0 0 chr9 12475796 12475842 -111600330 + (TAA)n Simple_repeat Simple_repeat 3 48 0 5 680 971 143 126 0 chr9 12476090 12476265 -111599907 + RLTR33 LTR ERVK 1 197 -481 5 680 2538 115 17 34 chr9 12476267 12476680 -111599492 - L1_Mus4 LINE L1 -6 6630 6225 5 680 4778 184 41 13 chr9 12476680 12477612 -111598560 - RMER17B LTR ERVK 0 958 1 5 680 1412 111 98 8 chr9 12477613 12477858 -111598314 - L1_Mus4 LINE L1 -408 6228 5962 5 680 3606 90 16 7 chr9 12477851 12478411 -111597761 - MusHAL1 LINE L1 -1926 786 222 5 680 3485 178 59 11 chr9 12478411 12479254 -111596918 - L1VL2 LINE L1 -5555 780 15 5 680 2885 139 14 0 chr9 12479255 12479695 -111596477 + RLTR33 LTR ERVK 190 635 -43 5 680 826 164 226 0 chr9 12479700 12479877 -111596295 - RMER6D LTR ERVK -501 219 3 5 680 347 21 43 0 chr9 12480162 12480209 -111595963 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 5 680 811 55 9 9 chr9 12480209 12480319 -111595853 - B1_Mm SINE Alu 0 147 38 5 680 331 261 48 105 chr9 12480211 12480335 -111595837 - B4 SINE B4 -69 223 107 5 680 25 31 0 0 chr9 12481119 12481151 -111595021 + AT_rich Low_complexity Low_complexity 1 32 0 5 680 28 0 0 0 chr9 12481398 12481426 -111594746 + AT_rich Low_complexity Low_complexity 1 28 0 5 680 185 128 21 0 chr9 12481597 12481644 -111594528 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 5 680 1179 40 0 0 chr9 12481751 12481900 -111594272 + (CA)n Simple_repeat Simple_repeat 2 150 0 5 680 799 266 78 5 chr9 12482506 12482710 -111593462 + ORR1D1 LTR MaLR 3 221 -153 5 680 2773 70 28 20 chr9 12483312 12483705 -111592467 + MTA_Mm LTR MaLR 1 396 0 5 680 740 91 0 9 chr9 12484928 12485039 -111591133 + (TTC)n Simple_repeat Simple_repeat 1 110 0 5 680 234 0 0 0 chr9 12485050 12485076 -111591096 + (TCCCC)n Simple_repeat Simple_repeat 1 26 0 5 680 751 0 32 32 chr9 12485079 12485202 -111590970 + (TTCTC)n Simple_repeat Simple_repeat 4 126 0 5 680 682 306 8 83 chr9 12486026 12486268 -111589904 + ID_B1 SINE B4 1 224 0 5 680 223 204 0 20 chr9 12487720 12487770 -111588402 + A-rich Low_complexity Low_complexity 2 50 0 5 680 333 266 101 63 chr9 12488632 12488821 -111587351 + ID_B1 SINE B4 16 211 -13 5 680 399 350 25 25 chr9 12489088 12489372 -111586800 + B4A SINE B4 3 286 -6 5 680 325 157 72 0 chr9 12490170 12490253 -111585919 - Lx3C LINE L1 -2 6974 6886 5 680 641 289 140 4 chr9 12490924 12491181 -111584991 + Lx7 LINE L1 7068 7359 -337 5 680 227 203 13 39 chr9 12491188 12491265 -111584907 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 5 680 351 0 0 0 chr9 12491321 12491360 -111584812 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 680 247 275 56 40 chr9 12491384 12491509 -111584663 + Lx7 LINE L1 7560 7686 -10 5 680 1799 254 53 42 chr9 12491876 12492332 -111583840 - MT2A LTR ERVL -72 461 1 5 680 24 0 0 0 chr9 12492357 12492381 -111583791 + AT_rich Low_complexity Low_complexity 1 24 0 5 680 738 264 12 72 chr9 12492395 12492644 -111583528 + ORR1D-int LTR MaLR 2 235 -1135 5 680 282 340 96 34 chr9 12493595 12493981 -111582191 - Lx8 LINE L1 -17 7456 7047 5 680 2633 92 2 0 chr9 12494484 12494877 -111581295 - L1_Mus2 LINE L1 -920 5646 5253 5 680 6481 73 18 2 chr9 12494869 12495772 -111580400 + L1_Mus2 LINE L1 5650 6566 0 5 680 333 186 16 27 chr9 12495778 12495867 -111580305 - ORR1C2 LTR MaLR -28 356 263 5 680 599 108 9 0 chr9 12496037 12496148 -111580024 + (TC)n Simple_repeat Simple_repeat 1 112 0 5 680 441 0 0 0 chr9 12496148 12496197 -111579975 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 680 296 145 11 57 chr9 12497282 12497370 -111578802 + T-rich Low_complexity Low_complexity 2 85 0 5 680 426 85 0 0 chr9 12498983 12499042 -111577130 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 680 306 365 86 37 chr9 12499115 12499277 -111576895 - B4A SINE B4 -117 175 6 5 680 230 381 9 37 chr9 12499680 12499789 -111576383 - PB1D10 SINE Alu -10 107 2 5 680 279 0 0 0 chr9 12500949 12500980 -111575192 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 680 369 43 0 0 chr9 12501211 12501258 -111574914 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 680 1309 282 94 13 chr9 12501745 12502119 -111574053 - MT2A LTR ERVL -129 404 1 3 680 567 57 22 11 chr9 12502424 12502513 -111573659 + (TC)n Simple_repeat Simple_repeat 1 90 0 4 680 818 156 29 0 chr9 12502523 12502780 -111573392 + (TCTA)n Simple_repeat Simple_repeat 1 264 0 5 680 255 61 0 0 chr9 12502983 12503016 -111573156 + (T)n Simple_repeat Simple_repeat 1 33 0 6 680 356 310 113 28 chr9 12503618 12503900 -111572272 - L1M3 LINE L1 -1979 4161 3856 7 680 589 275 48 42 chr9 12505580 12505613 -111570559 - B3A SINE B2 -22 176 148 8 680 1384 220 143 0 chr9 12505613 12505949 -111570223 - ORR1C2 LTR MaLR 0 384 1 9 680 589 275 48 42 chr9 12505949 12506082 -111570090 - B3A SINE B2 -51 147 9 8 680 309 88 0 0 chr9 12506243 12506300 -111569872 + Lx LINE L1 6592 6648 -6 1 680 360 194 27 27 chr9 12506310 12506384 -111569788 + RMER15 LTR ERVL 52 125 -450 1 680 1412 158 4 78 chr9 12506384 12506665 -111569507 + ORR1A3 LTR MaLR 11 270 -59 1 680 1353 179 41 19 chr9 12506667 12506934 -111569238 + Lx4A LINE L1 6738 7010 -48 1 680 1018 123 14 0 chr9 12507205 12507351 -111568821 + B1_Mus1 SINE Alu 1 148 0 1 680 398 36 18 0 chr9 12507352 12507408 -111568764 + (CAAAAA)n Simple_repeat Simple_repeat 3 59 0 1 680 416 118 8 2 chr9 12507842 12507910 -111568262 + ORR1A3 LTR MaLR 260 384 0 1 680 7514 195 96 50 chr9 12507911 12509785 -111566387 + ORR1A3-int LTR MaLR 2 1962 -1 1 680 1489 186 26 81 chr9 12509785 12510130 -111566042 + ORR1A3 LTR MaLR 1 326 0 1 680 448 225 118 48 chr9 12510397 12510584 -111565588 - L1MC LINE L1 -1316 4830 4631 1 680 207 200 0 0 chr9 12510665 12510705 -111565467 + (ATTG)n Simple_repeat Simple_repeat 1 40 0 1 680 325 316 13 0 chr9 12510783 12510862 -111565310 - PB1D10 SINE Alu -11 106 27 1 680 29 0 0 0 chr9 12510895 12510924 -111565248 + AT_rich Low_complexity Low_complexity 1 29 0 1 680 514 363 82 1 chr9 12512876 12513061 -111563111 + B3A SINE B2 1 201 -15 2 680 9406 92 23 5 chr9 12513070 12514934 -111561238 + Lx3_Mus LINE L1 5094 6997 -12 2 680 219 306 153 0 chr9 12514971 12515056 -111561116 + B3 SINE B2 3 100 -116 2 680 309 284 60 68 chr9 12515097 12515214 -111560958 + B3 SINE B2 94 209 -7 2 680 4683 240 56 23 chr9 12516820 12518013 -111558159 - Lx7 LINE L1 -856 6840 5608 2 680 420 394 42 0 chr9 12518343 12518541 -111557631 + MLT1E2 LTR MaLR 413 615 -9 2 680 254 392 0 0 chr9 12519768 12519875 -111556297 + MER58A DNA MER1_type 21 127 -97 2 680 27 62 0 0 chr9 12520705 12520753 -111555419 + AT_rich Low_complexity Low_complexity 1 48 0 2 680 253 250 113 40 chr9 12520993 12521143 -111555029 + Lx8 LINE L1 7306 7466 -7 2 680 207 0 0 0 chr9 12521366 12521389 -111554783 + (A)n Simple_repeat Simple_repeat 1 23 0 2 680 1159 37 0 0 chr9 12521401 12521536 -111554636 + B1_Mm SINE Alu 4 138 -9 2 680 228 86 0 0 chr9 12521536 12521571 -111554601 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 680 611 158 88 0 chr9 12522781 12522895 -111553277 - RMER1B Other Other -209 857 734 3 680 806 162 34 7 chr9 12522883 12523032 -111553140 + L1_Mur1 LINE L1 4940 5092 -794 3 680 454 342 61 26 chr9 12523231 12523495 -111552677 - B4A SINE B4 -18 274 2 3 680 1126 89 6 0 chr9 12523542 12523711 -111552461 + L1Md_F2 LINE L1 6413 6582 0 3 680 6016 91 2 2 chr9 12523807 12524647 -111551525 - L1Md_F2 LINE L1 -522 5361 4522 3 680 1583 81 5 0 chr9 12524639 12524849 -111551323 + L1Md_F2 LINE L1 5376 5586 -297 3 680 7218 81 3 11 chr9 12524849 12525837 -111550335 + L1Md_F2 LINE L1 5587 6566 -16 3 680 21 0 0 0 chr9 12525839 12525860 -111550312 + AT_rich Low_complexity Low_complexity 1 21 0 3 680 3587 124 24 2 chr9 12525913 12526463 -111549709 - Lx3_Mus LINE L1 -8 7001 6440 3 680 1018 269 81 9 chr9 12527170 12527515 -111548657 - ORR1D2 LTR MaLR 0 370 1 3 680 816 281 88 80 chr9 12527515 12527890 -111548282 - MTE2b LTR MaLR -1 378 1 3 680 317 216 25 142 chr9 12528062 12528224 -111547948 - Lx7 LINE L1 0 7696 7554 4 680 1142 80 6 6 chr9 12528644 12528808 -111547364 - L1_Mus1 LINE L1 0 6567 6404 4 680 819 301 28 35 chr9 12529002 12529291 -111546881 + RLTR20D LTR ERVK 1 287 -281 4 680 230 188 0 40 chr9 12529269 12529319 -111546853 + RLTR20D LTR ERVK 417 464 -114 4 680 447 19 0 0 chr9 12529359 12529411 -111546761 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 680 17151 68 4 1 chr9 12530557 12533559 -111542613 - L1Md_F2 LINE L1 0 6582 3571 4 680 32577 96 10 17 chr9 12533592 12539976 -111536196 + L1Md_F3 LINE L1 238 6564 -20 4 680 189 0 0 0 chr9 12539978 12539999 -111536173 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 680 7346 82 1 0 chr9 12540005 12540989 -111535183 + L1Md_F2 LINE L1 4601 5585 -298 4 680 7353 71 9 13 chr9 12540991 12541990 -111534182 + L1Md_F2 LINE L1 5588 6582 0 4 680 8384 90 2 0 chr9 12541992 12543147 -111533025 + L1Md_F2 LINE L1 4430 5586 -297 4 680 7055 94 3 10 chr9 12543147 12544145 -111532027 + L1Md_F2 LINE L1 5587 6577 -5 4 680 365 132 24 0 chr9 12544887 12544970 -111531202 + CT-rich Low_complexity Low_complexity 2 86 0 4 680 985 90 7 65 chr9 12544971 12545126 -111531046 - B1_Mm SINE Alu -1 146 1 5 680 4288 111 15 42 chr9 12545703 12546449 -111529723 - RMER17A LTR ERVK -4 747 22 5 680 2191 101 3 3 chr9 12547339 12547658 -111528514 - L1_Mus2 LINE L1 -1 6565 6247 5 680 241 323 30 40 chr9 12547755 12547855 -111528317 - MIR SINE MIR -40 222 124 5 680 492 48 0 0 chr9 12548299 12548362 -111527810 + (TTTTG)n Simple_repeat Simple_repeat 5 67 0 5 680 338 323 75 0 chr9 12549210 12549396 -111526776 + L1MA9 LINE L1 5951 6150 -162 5 680 2532 204 96 24 chr9 12549528 12550111 -111526061 + Lx4B LINE L1 6426 7050 -8 5 680 1427 63 32 0 chr9 12550489 12550678 -111525494 + B2_Mm2 SINE B2 1 195 0 5 680 1198 41 7 0 chr9 12550685 12550832 -111525340 + B1_Mus1 SINE Alu 1 148 0 5 680 928 193 96 23 chr9 12552704 12552952 -111523220 - ORR1A4 LTR MaLR -9 385 93 5 680 3631 126 15 146 chr9 12552952 12553816 -111522356 - RMER17A LTR ERVK 0 751 1 6 680 790 231 133 102 chr9 12553816 12553861 -111522311 - ORR1A4 LTR MaLR -247 147 84 5 680 8813 144 40 7 chr9 12553861 12556033 -111520139 + L1VL2 LINE L1 98 2355 -1260 6 680 1950 101 50 38 chr9 12556033 12556353 -111519819 + RLTR13D6 LTR ERVK 1 324 -578 6 680 6806 119 34 1 chr9 12556353 12558015 -111518157 + L1_Mus3 LINE L1 4917 6635 -3 6 680 472 178 0 29 chr9 12558017 12558121 -111518051 - ORR1A4 LTR MaLR -226 103 3 5 680 233 276 74 60 chr9 12558586 12558803 -111517369 + RLTR41 LTR ERV1 199 472 -47 6 680 28 48 0 0 chr9 12558851 12558893 -111517279 + AT_rich Low_complexity Low_complexity 1 42 0 6 680 1060 102 83 6 chr9 12559692 12559860 -111516312 - B2_Mm2 SINE B2 -14 181 1 6 680 34 55 0 0 chr9 12560230 12560285 -111515887 + AT_rich Low_complexity Low_complexity 1 55 0 6 680 185 86 0 54 chr9 12560409 12560446 -111515726 + (GTTTG)n Simple_repeat Simple_repeat 1 35 0 6 680 1844 335 81 14 chr9 12560469 12561248 -111514924 - Lx8 LINE L1 -175 7298 6468 6 680 13780 58 21 11 chr9 12561243 12563908 -111512264 + L1Md_A LINE L1 388 3066 -2817 7 680 1407 210 9 19 chr9 12563931 12564246 -111511926 - L1VL1 LINE L1 -6110 312 1 7 680 442 336 75 20 chr9 12564388 12564534 -111511638 + RSINE1 SINE B4 12 165 0 7 680 396 195 16 16 chr9 12564742 12564867 -111511305 + (CATA)n Simple_repeat Simple_repeat 4 128 0 7 680 282 279 147 25 chr9 12565101 12565387 -111510785 + L1M2 LINE L1 4390 4710 -1433 7 680 24 85 0 0 chr9 12565387 12565446 -111510726 + AT_rich Low_complexity Low_complexity 1 59 0 7 680 266 143 93 6 chr9 12565474 12565636 -111510536 + (TA)n Simple_repeat Simple_repeat 2 177 0 7 680 23 0 0 0 chr9 12566020 12566043 -111510129 + AT_rich Low_complexity Low_complexity 1 23 0 7 680 224 362 0 0 chr9 12566797 12566877 -111509295 + G-rich Low_complexity Low_complexity 6 85 0 7 680 26 0 0 0 chr9 12567523 12567549 -111508623 + AT_rich Low_complexity Low_complexity 1 26 0 7 680 3204 112 6 11 chr9 12568126 12568649 -111507523 + MusHAL1 LINE L1 1745 2264 -448 8 680 23594 126 15 3 chr9 12568622 12569814 -111506358 + L1_Mus1 LINE L1 2074 3272 -2611 8 680 3762 51 32 2 chr9 12569814 12570289 -111505883 + L1Md_F3 LINE L1 6095 6583 -1 8 680 23594 114 16 8 chr9 12570289 12573564 -111502608 + L1_Mus1 LINE L1 3273 6567 0 8 680 437 298 23 46 chr9 12573791 12573921 -111502251 - Lx7 LINE L1 -986 6710 6584 8 680 250 232 14 14 chr9 12573930 12574000 -111502172 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 680 303 202 34 0 chr9 12574002 12574091 -111502081 + (TA)n Simple_repeat Simple_repeat 2 93 0 8 680 210 292 11 6 chr9 12574143 12574322 -111501850 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 680 692 71 10 0 chr9 12575093 12575192 -111500980 + (GGAA)n Simple_repeat Simple_repeat 2 101 0 8 680 1000 169 16 5 chr9 12575420 12575605 -111500567 + B2_Mm2 SINE B2 2 188 -7 8 680 3478 162 14 11 chr9 12575625 12576685 -111499487 + L1VL4 LINE L1 231 1293 -2266 8 680 12815 175 18 86 chr9 12576678 12579103 -111497069 + Lx LINE L1 3023 5285 -598 9 680 1850 97 8 0 chr9 12579103 12579362 -111496810 + L1_Mus2 LINE L1 6305 6565 -1 9 680 12815 175 18 86 chr9 12579362 12579912 -111496260 + Lx LINE L1 5286 5793 -90 9 680 1960 69 99 17 chr9 12579913 12580207 -111495965 - L1Md_F2 LINE L1 -13 6569 6252 9 680 744 177 0 0 chr9 12580207 12580337 -111495835 + L1_Mm LINE L1 4017 4146 -1737 9 680 734 120 56 8 chr9 12580324 12580450 -111495722 + L1_Mm LINE L1 3732 3863 -2020 9 680 1361 118 3 4 chr9 12580457 12580674 -111495498 + Lx LINE L1 5771 5985 -669 9 10 15994 125 10 2 chr9 12580652 12583207 -111492965 + L1_Mm LINE L1 2810 5384 -499 9 681 345 283 40 0 chr9 12583609 12583708 -111492464 + PB1D7 SINE Alu 6 108 -12 9 681 261 398 122 4 chr9 12585888 12586158 -111490014 - L2a LINE L2 -33 3393 3092 9 681 623 66 0 0 chr9 12586192 12586283 -111489889 - L1_Mus2 LINE L1 0 6566 6476 9 681 260 108 0 0 chr9 12586784 12586821 -111489351 + Lx2 LINE L1 6602 6638 -359 9 681 1209 146 52 0 chr9 12586821 12587033 -111489139 + Lx2 LINE L1 6768 6990 -7 9 681 1128 264 74 23 chr9 12587339 12587691 -111488481 + MTE2b LTR MaLR 1 370 -9 9 681 293 240 17 6 chr9 12588143 12588319 -111487853 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1 681 632 96 26 9 chr9 12588408 12588524 -111487648 + (TCTA)n Simple_repeat Simple_repeat 2 119 0 1 681 723 76 0 25 chr9 12589030 12589152 -111487020 + L1_Mus1 LINE L1 6448 6566 -1 1 681 1700 208 9 26 chr9 12589418 12589579 -111486593 + Lx7 LINE L1 7076 7235 -461 1 681 1839 156 0 69 chr9 12589579 12589929 -111486243 + ORR1A3 LTR MaLR 1 326 0 1 681 1700 208 9 26 chr9 12589929 12590112 -111486060 + Lx7 LINE L1 7236 7414 -282 1 681 234 0 0 0 chr9 12590113 12590139 -111486033 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 681 290 250 77 51 chr9 12590151 12590307 -111485865 + Lx7 LINE L1 7534 7693 -3 1 681 280 295 113 63 chr9 12590438 12590597 -111485575 - LTR16A1 LTR ERVL 0 456 290 1 681 259 284 31 94 chr9 12590626 12590754 -111485418 + Charlie5 DNA MER1_type 7 126 -2498 1 681 282 371 53 47 chr9 12592156 12592175 -111483997 + ID SINE ID 66 85 -139 1 681 542 227 75 21 chr9 12592175 12592316 -111483856 + B1_Mur2 SINE Alu 4 149 0 1 681 459 0 0 0 chr9 12592606 12592657 -111483515 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 681 21 0 0 0 chr9 12595164 12595185 -111480987 + AT_rich Low_complexity Low_complexity 1 21 0 1 681 298 329 47 34 chr9 12595223 12595371 -111480801 + MER110A LTR ERV1 20 169 -299 1 681 1014 82 7 20 chr9 12595474 12595623 -111480549 + B1_Mm SINE Alu 1 147 0 1 681 544 310 85 5 chr9 12595862 12596063 -111480109 - ORR1D1 LTR MaLR 0 374 158 1 681 250 287 12 6 chr9 12596063 12596161 -111480011 + GA-rich Low_complexity Low_complexity 1 98 0 1 681 857 189 81 23 chr9 12596161 12596334 -111479838 - ORR1D1 LTR MaLR -191 183 1 1 681 23 33 0 0 chr9 12596474 12596504 -111479668 + AT_rich Low_complexity Low_complexity 1 30 0 1 681 6609 38 0 0 chr9 12596526 12597314 -111478858 - L1Md_T LINE L1 0 6582 5795 1 681 256 64 0 41 chr9 12598900 12598949 -111477223 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 681 511 345 41 9 chr9 12599114 12599320 -111476852 - B3A SINE B2 -11 205 2 1 681 1527 277 20 20 chr9 12599785 12600186 -111475986 + MTD LTR MaLR 19 419 0 1 681 235 378 11 0 chr9 12600194 12600284 -111475888 - MIRb SINE MIR -140 128 38 1 681 269 304 101 139 chr9 12601016 12601253 -111474919 - B4 SINE B4 -38 254 27 1 681 3792 134 16 7 chr9 12601289 12601898 -111474274 - Lx LINE L1 -16 6638 6024 1 681 186 118 0 0 chr9 12601903 12601937 -111474235 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 681 34954 71 12 4 chr9 12601939 12608048 -111468124 - L1Md_F2 LINE L1 -2 6580 422 1 681 1951 143 0 3 chr9 12608048 12608350 -111467822 - Lx2 LINE L1 -613 6384 6084 1 681 23 33 0 0 chr9 12608959 12608989 -111467183 + AT_rich Low_complexity Low_complexity 1 30 0 1 681 352 322 25 17 chr9 12609217 12609337 -111466835 + MTEb LTR MaLR 259 379 0 1 681 351 323 56 46 chr9 12609671 12609866 -111466306 - MLT1D LTR MaLR -53 452 256 1 681 335 291 28 28 chr9 12610103 12610248 -111465924 - RNERVK23-int LTR ERVK -1880 6337 6193 1 681 478 265 164 79 chr9 12610872 12611404 -111464768 - SRV_MM-int LTR ERVK -4049 2118 1542 1 681 245 29 0 29 chr9 12613814 12613849 -111462323 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 681 1038 90 0 0 chr9 12614378 12614512 -111461660 - B1_Mus1 SINE Alu -14 134 1 1 681 376 309 52 35 chr9 12614909 12615140 -111461032 + Lx7 LINE L1 5643 5877 -1819 1 681 1487 120 13 0 chr9 12615177 12615402 -111460770 + L1_Mus3 LINE L1 5610 5837 -801 1 681 3260 157 23 16 chr9 12615699 12616339 -111459833 + RMER17D2 LTR ERVK 1 645 -164 1 681 413 292 60 13 chr9 12617465 12617614 -111458558 + Lx8 LINE L1 6969 7124 -349 1 681 387 41 0 0 chr9 12618219 12618268 -111457904 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 681 411 21 0 0 chr9 12618343 12618391 -111457781 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 681 504 279 0 0 chr9 12618392 12618518 -111457654 - B1_Mur2 SINE Alu -21 128 3 1 681 300 70 0 0 chr9 12619555 12619598 -111456574 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 681 243 79 0 0 chr9 12619598 12619635 -111456537 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 681 327 113 0 0 chr9 12619921 12619974 -111456198 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 681 416 176 66 38 chr9 12620693 12620799 -111455373 + RMER15 LTR ERVL 28 136 -439 1 681 1922 226 30 102 chr9 12620800 12621371 -111454801 + RMER20B LTR ERVK 1 530 -97 1 681 297 0 0 0 chr9 12621434 12621467 -111454705 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 681 288 0 0 0 chr9 12621467 12621499 -111454673 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 681 688 240 19 0 chr9 12621910 12622064 -111454108 + RMER15 LTR ERVL 419 575 0 1 681 627 327 34 54 chr9 12622932 12623229 -111452943 + B4 SINE B4 2 292 0 1 681 919 338 94 16 chr9 12623865 12624356 -111451816 - MT2A LTR ERVL -3 530 2 1 681 3535 109 55 14 chr9 12626206 12626756 -111449416 - Lx LINE L1 -7 6647 6076 1 681 22 0 0 0 chr9 12626972 12626994 -111449178 + AT_rich Low_complexity Low_complexity 1 22 0 1 681 369 43 0 0 chr9 12627504 12627551 -111448621 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 681 2887 276 104 32 chr9 12627745 12628930 -111447242 + RMER1A Other Other 15 1025 -5 1 681 35 41 0 0 chr9 12628956 12629005 -111447167 + AT_rich Low_complexity Low_complexity 1 49 0 1 681 25 51 0 0 chr9 12629019 12629058 -111447114 + AT_rich Low_complexity Low_complexity 1 39 0 1 681 205 172 31 15 chr9 12629441 12629506 -111446666 + (TAA)n Simple_repeat Simple_repeat 2 67 0 1 681 386 357 0 0 chr9 12629592 12629704 -111446468 - ID_B1 SINE B4 -21 203 92 1 681 21 0 0 0 chr9 12630625 12630646 -111445526 + AT_rich Low_complexity Low_complexity 1 21 0 1 681 207 69 0 0 chr9 12631416 12631445 -111444727 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 681 266 0 29 0 chr9 12632405 12632439 -111443733 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 681 345 141 0 0 chr9 12632583 12632654 -111443518 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 681 402 108 0 0 chr9 12632649 12632723 -111443449 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 681 396 0 0 0 chr9 12632723 12632767 -111443405 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 681 545 297 20 0 chr9 12632780 12632928 -111443244 - B3A SINE B2 -47 151 1 1 681 209 200 25 0 chr9 12633722 12633762 -111442410 + MIRb SINE MIR 204 244 -24 1 681 524 331 18 0 chr9 12633974 12634143 -111442029 + B3A SINE B2 27 198 0 1 681 21 82 0 0 chr9 12634143 12634192 -111441980 + AT_rich Low_complexity Low_complexity 1 49 0 1 681 386 105 10 40 chr9 12634291 12634390 -111441782 + T-rich Low_complexity Low_complexity 1 96 0 1 681 1248 271 104 79 chr9 12635073 12635629 -111440543 - RLTR18 LTR ERVK -46 570 1 1 681 186 43 0 0 chr9 12635883 12635906 -111440266 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 681 816 46 0 0 chr9 12635906 12636014 -111440158 + (GA)n Simple_repeat Simple_repeat 2 110 0 1 681 664 329 58 44 chr9 12636209 12636559 -111439613 + ORR1E LTR MaLR 4 379 0 1 681 693 386 52 59 chr9 12636565 12637121 -111439051 - MER74B LTR ERVL -8 614 63 1 681 2179 186 71 45 chr9 12638244 12638280 -111437892 - RLTR20B2 LTR ERVK -54 506 467 1 681 690 55 0 0 chr9 12638280 12638371 -111437801 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 681 2179 186 71 45 chr9 12638371 12638824 -111437348 - RLTR20B2 LTR ERVK -94 466 4 1 681 321 47 0 0 chr9 12638864 12638907 -111437265 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 681 272 300 96 37 chr9 12640613 12640748 -111435424 + MLT1A1 LTR MaLR 264 406 -2 1 681 5516 266 50 55 chr9 12642080 12642681 -111433491 - Lx6 LINE L1 -5 7455 6905 1 681 459 0 0 0 chr9 12642681 12642732 -111433440 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 681 621 88 0 0 chr9 12642732 12642833 -111433339 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 681 5516 235 54 65 chr9 12642833 12645207 -111430965 - Lx6 LINE L1 -556 6904 4509 1 681 701 226 11 5 chr9 12645214 12645401 -111430771 - Lx6 LINE L1 -1829 4051 3864 1 681 585 135 18 46 chr9 12645441 12645550 -111430622 + B2_Mm2 SINE B2 3 108 -87 1 681 23 0 0 0 chr9 12645686 12645709 -111430463 + AT_rich Low_complexity Low_complexity 1 23 0 1 681 423 0 0 0 chr9 12646557 12646604 -111429568 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 681 1138 69 0 0 chr9 12646604 12646748 -111429424 - B1_Mm SINE Alu -2 145 2 1 681 629 263 6 46 chr9 12647896 12648071 -111428101 - B3A SINE B2 -3 195 28 1 681 25 0 0 0 chr9 12648676 12648701 -111427471 + AT_rich Low_complexity Low_complexity 1 25 0 1 681 411 276 156 27 chr9 12649313 12649499 -111426673 + B3 SINE B2 7 216 0 1 681 3509 82 4 8 chr9 12650158 12650648 -111425524 + L1_Mus2 LINE L1 6079 6566 0 1 681 200 125 0 24 chr9 12650683 12650724 -111425448 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 681 1368 66 49 0 chr9 12650724 12650907 -111425265 - B2_Mm1t SINE B2 0 193 2 1 681 335 329 91 42 chr9 12651523 12651688 -111424484 + B4A SINE B4 116 288 -4 1 681 564 15 0 0 chr9 12651690 12651755 -111424417 + (TGGA)n Simple_repeat Simple_repeat 2 66 0 1 681 267 290 62 46 chr9 12651858 12651988 -111424184 + RLTR42-int LTR ERVK 1199 1330 -4192 1 681 259 300 38 48 chr9 12653852 12653957 -111422215 + RLTR25B LTR ERVK 925 1028 0 1 681 223 170 0 0 chr9 12655381 12655428 -111420744 + A-rich Low_complexity Low_complexity 1 47 0 1 681 1387 281 69 12 chr9 12655494 12655921 -111420251 - Lx6 LINE L1 -26 7434 6614 1 681 640 153 8 8 chr9 12655922 12656054 -111420118 - Lx LINE L1 0 6654 6523 1 681 1993 100 41 0 chr9 12656054 12656344 -111419828 + Lx LINE L1 5762 6063 -591 1 681 3397 231 93 35 chr9 12656344 12657478 -111418694 - Lx5 LINE L1 -416 6634 5435 1 681 408 20 0 0 chr9 12657478 12657527 -111418645 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 681 3397 196 91 7 chr9 12657527 12657873 -111418299 - Lx5 LINE L1 -446 5434 5084 1 681 353 298 104 54 chr9 12657981 12658222 -111417950 - L1MEc LINE L1 -5494 906 654 2 681 403 318 165 35 chr9 12658380 12658696 -111417476 - L1MEc LINE L1 -5986 414 58 2 681 375 276 108 10 chr9 12658715 12658909 -111417263 + Charlie1a DNA MER1_type 732 944 -511 2 681 1549 115 127 73 chr9 12659015 12659315 -111416857 + L1_Mus2 LINE L1 6251 6566 0 2 681 552 273 68 36 chr9 12659390 12659671 -111416501 + Charlie1a DNA MER1_type 1164 1453 -2 2 681 634 307 57 22 chr9 12659681 12659911 -111416261 + B4A SINE B4 11 248 -44 2 681 21 0 0 0 chr9 12660174 12660195 -111415977 + AT_rich Low_complexity Low_complexity 1 21 0 2 681 199 250 70 18 chr9 12660375 12660432 -111415740 - L3 LINE CR1 -1928 2561 2502 2 681 278 98 20 0 chr9 12660476 12660527 -111415645 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 2 681 599 256 15 0 chr9 12660543 12660680 -111415492 - B1_Mur2 SINE Alu -8 141 3 2 681 23 33 0 0 chr9 12662470 12662500 -111413672 + AT_rich Low_complexity Low_complexity 1 30 0 2 681 23 0 0 0 chr9 12662789 12662812 -111413360 + AT_rich Low_complexity Low_complexity 1 23 0 2 681 413 317 0 38 chr9 12663185 12663316 -111412856 + B3 SINE B2 67 192 -24 2 681 339 204 319 0 chr9 12664137 12664294 -111411878 + Lx9 LINE L1 7429 7635 -9 2 681 432 0 0 0 chr9 12664411 12664459 -111411713 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 681 21 0 0 0 chr9 12664648 12664669 -111411503 + AT_rich Low_complexity Low_complexity 1 21 0 2 681 223 296 0 0 chr9 12664925 12664979 -111411193 + MIR SINE MIR 127 180 -82 2 681 3840 196 96 16 chr9 12665205 12666041 -111410131 + RMER13B LTR ERVK 1 903 -5 2 681 553 312 108 87 chr9 12666040 12666530 -111409642 - RMER13A LTR ERVK -82 545 2 2 681 2382 188 41 14 chr9 12666960 12667473 -111408699 - RLTR11A2 LTR ERVK 0 527 1 2 681 22 56 0 0 chr9 12668014 12668050 -111408122 + AT_rich Low_complexity Low_complexity 1 36 0 2 681 426 348 43 29 chr9 12668128 12668335 -111407837 - MIRb SINE MIR -39 229 20 2 681 17017 130 23 12 chr9 12669648 12671647 -111404525 + L1VL4 LINE L1 1117 3130 -2753 2 681 216 0 0 0 chr9 12671647 12671671 -111404501 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 681 17017 134 19 13 chr9 12671671 12672879 -111403293 + L1VL4 LINE L1 3131 4341 -1542 2 681 4061 91 21 2 chr9 12672879 12673455 -111402717 + L1_Mus3 LINE L1 6052 6638 0 2 681 430 300 156 22 chr9 12673740 12673965 -111402207 + Lx8 LINE L1 7207 7461 -12 2 681 2078 180 57 24 chr9 12674056 12674477 -111401695 + RMER19B LTR ERVK 456 890 -12 2 681 370 330 27 0 chr9 12674483 12674595 -111401577 - RSINE1 SINE B4 -46 119 5 2 681 1567 178 33 73 chr9 12674793 12675251 -111400921 + RMER17C LTR ERVK 16 441 -517 2 681 1562 216 30 38 chr9 12675391 12675761 -111400411 + ORR1B2 LTR MaLR 1 367 0 2 681 274 299 50 30 chr9 12676472 12676572 -111399600 - B1F SINE Alu 0 149 48 2 681 392 337 48 24 chr9 12676484 12676694 -111399478 - ID_B1 SINE B4 -9 215 1 2 681 26 50 0 0 chr9 12677337 12677377 -111398795 + AT_rich Low_complexity Low_complexity 1 40 0 2 681 23 0 0 0 chr9 12677467 12677490 -111398682 + AT_rich Low_complexity Low_complexity 1 23 0 2 681 688 169 13 0 chr9 12677722 12677876 -111398296 + GA-rich Low_complexity Low_complexity 1 156 0 2 681 755 208 30 166 chr9 12678191 12678553 -111397619 + RLTRETN_Mm LTR ERVK 1 402 -7 2 681 10019 133 21 10 chr9 12678562 12680200 -111395972 + ETnERV2-int LTR ERVK 2 1656 -1658 2 681 3416 312 38 28 chr9 12680437 12682205 -111393967 + ETnERV2-int LTR ERVK 1790 3576 -2591 2 681 1276 91 11 11 chr9 12682205 12682394 -111393778 - B2_Mm1t SINE B2 -4 189 1 2 681 281 0 0 0 chr9 12682411 12682452 -111393720 - L1Md_T LINE L1 0 6582 6542 2 681 16415 126 43 41 chr9 12682464 12682710 -111393462 + ETnERV2-int LTR ERVK 4348 4599 -2807 2 681 193 262 197 15 chr9 12682710 12682776 -111393396 - L4 LINE RTE -974 1055 978 2 681 16415 126 43 41 chr9 12682776 12684394 -111391778 + ETnERV2-int LTR ERVK 4600 6264 -1142 2 681 296 24 24 0 chr9 12684394 12684435 -111391737 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2 681 16415 126 43 41 chr9 12684435 12685357 -111390815 + ETnERV2-int LTR ERVK 6265 7208 -198 2 681 578 243 317 7 chr9 12685357 12685647 -111390525 + RLTR13D6 LTR ERVK 158 537 -365 2 681 400 141 0 49 chr9 12685647 12685729 -111390443 + ETnERV2-int LTR ERVK 7329 7406 0 2 681 655 225 53 161 chr9 12685817 12686172 -111390000 + RLTRETN_Mm LTR ERVK 6 409 0 2 681 3783 137 80 3 chr9 12686305 12686927 -111389245 + Lx2 LINE L1 6326 6995 -2 2 681 26 0 0 0 chr9 12686927 12686953 -111389219 + AT_rich Low_complexity Low_complexity 1 26 0 2 681 222 220 0 0 chr9 12687053 12687112 -111389060 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 681 2597 169 49 14 chr9 12687371 12687881 -111388291 + RLTR11A LTR ERVK 1 528 0 2 681 246 62 0 0 chr9 12687899 12687931 -111388241 + (T)n Simple_repeat Simple_repeat 1 32 0 2 681 333 117 0 0 chr9 12688757 12688817 -111387355 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 681 347 56 19 0 chr9 12689502 12689556 -111386616 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 681 234 156 0 43 chr9 12692568 12692615 -111383557 + RMER15 LTR ERVL 345 389 -186 2 681 44 35 0 0 chr9 12693463 12693521 -111382651 + AT_rich Low_complexity Low_complexity 1 58 0 2 681 10020 189 52 75 chr9 12693707 12694124 -111382048 - L1_Mur3 LINE L1 -778 5102 4635 2 681 189 0 0 0 chr9 12694124 12694145 -111382027 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 2 681 10020 189 52 75 chr9 12694145 12694225 -111381947 - L1_Mur3 LINE L1 -1246 4634 4542 2 681 226 0 29 29 chr9 12694225 12694260 -111381912 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 681 10020 189 52 75 chr9 12694260 12696764 -111379408 - L1_Mur3 LINE L1 -1339 4541 2172 2 681 2513 103 42 17 chr9 12696823 12697226 -111378946 + L1_Mus3 LINE L1 6222 6634 -4 2 681 1236 196 0 4 chr9 12697540 12697766 -111378406 + URR1B DNA MER1_type 1 225 0 2 681 6369 133 38 19 chr9 12698362 12699439 -111376733 - Lx3_Mus LINE L1 -6 7003 5907 2 681 370 0 40 0 chr9 12699439 12699489 -111376683 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 2 681 12528 101 9 16 chr9 12699516 12701586 -111374586 - Lx3_Mus LINE L1 -1038 5971 3924 2 681 21930 96 71 18 chr9 12701580 12704203 -111371969 - L1Md_F2 LINE L1 -4 6578 3718 2 681 1065 91 21 0 chr9 12704203 12704346 -111371826 - B1_Mus2 SINE Alu 0 147 2 2 681 21930 127 113 29 chr9 12704346 12704907 -111371265 - L1Md_F2 LINE L1 -2169 3717 3156 2 681 204 40 0 0 chr9 12704907 12704932 -111371240 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 681 21930 137 177 31 chr9 12704932 12707665 -111368507 - L1Md_F2 LINE L1 -2731 3155 14 2 681 198 0 0 0 chr9 12707745 12707767 -111368405 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2 681 4927 145 13 0 chr9 12707767 12708595 -111367577 - Lx2 LINE L1 -27 6970 6132 2 681 2548 122 14 7 chr9 12708592 12709012 -111367160 + Lx2 LINE L1 5730 6152 -845 2 681 24 0 0 0 chr9 12709664 12709688 -111366484 + AT_rich Low_complexity Low_complexity 1 24 0 2 681 230 259 54 30 chr9 12710031 12710198 -111365974 + L1M4 LINE L1 5136 5306 -840 2 681 279 308 57 57 chr9 12710286 12710534 -111365638 + L1MC3 LINE L1 5426 5673 -2112 2 681 25 65 0 0 chr9 12710569 12710615 -111365557 + AT_rich Low_complexity Low_complexity 1 46 0 2 681 364 270 19 9 chr9 12710615 12710766 -111365406 + L1MC3 LINE L1 5793 5947 -397 2 681 1091 110 12 0 chr9 12710770 12710934 -111365238 - Lx3_Mus LINE L1 -542 6467 6302 2 681 3881 111 13 2 chr9 12710935 12711486 -111364686 + Lx3A LINE L1 6420 6976 -5 2 681 21 57 0 0 chr9 12711487 12711522 -111364650 + AT_rich Low_complexity Low_complexity 1 35 0 2 681 275 224 45 0 chr9 12711559 12711626 -111364546 + L1MC3 LINE L1 6079 6148 -1637 2 681 266 319 21 14 chr9 12711925 12712065 -111364107 + L1MC3 LINE L1 6515 6655 -1130 2 681 1039 242 47 57 chr9 12712414 12712827 -111363345 + RLTR20D LTR ERVK 44 488 -46 2 681 270 0 0 0 chr9 12712827 12712857 -111363315 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 681 26 0 0 0 chr9 12712869 12712895 -111363277 + AT_rich Low_complexity Low_complexity 1 26 0 2 681 1365 278 126 4 chr9 12712981 12713483 -111362689 - Lx5 LINE L1 -9 7041 6479 2 681 1101 212 141 3 chr9 12713482 12713766 -111362406 - Lx5 LINE L1 -143 6907 6585 2 681 729 158 0 8 chr9 12713764 12713920 -111362252 + L1_Mur2 LINE L1 2228 2390 -3496 2 682 3165 38 7 34 chr9 12714238 12714645 -111361527 + MTA_Mm LTR MaLR 1 396 0 2 682 5829 39 3 0 chr9 12714645 12715373 -111360799 + MTA_Mm-int LTR MaLR 1 730 -368 2 682 1915 59 39 0 chr9 12715362 12715616 -111360556 + MTA_Mm LTR MaLR 133 396 0 2 682 540 344 20 71 chr9 12716126 12716323 -111359849 - B3A SINE B2 -5 193 7 2 682 23 0 0 0 chr9 12716418 12716441 -111359731 + AT_rich Low_complexity Low_complexity 1 23 0 2 682 21 36 0 0 chr9 12717040 12717068 -111359104 + AT_rich Low_complexity Low_complexity 1 28 0 2 682 316 358 164 16 chr9 12717836 12718417 -111357755 - L1M5 LINE L1 -3028 3118 2452 2 682 1565 222 40 54 chr9 12718478 12718849 -111357323 - ORR1C1 LTR MaLR -12 366 1 2 682 383 361 84 42 chr9 12719367 12719604 -111356568 + MIR SINE MIR 6 252 -10 2 682 1089 90 0 0 chr9 12719986 12720141 -111356031 + (GGA)n Simple_repeat Simple_repeat 2 156 0 2 682 4674 180 22 42 chr9 12720143 12721218 -111354954 - Lx2B LINE L1 -274 6726 5673 2 682 771 230 136 21 chr9 12721213 12721448 -111354724 + Lx2B LINE L1 6735 6996 -4 2 682 1104 283 95 9 chr9 12721478 12721803 -111354369 + MTD LTR MaLR 11 363 -56 2 682 433 286 43 0 chr9 12721813 12721998 -111354174 + Charlie5 DNA MER1_type 2424 2616 -8 2 682 191 342 0 14 chr9 12722570 12722644 -111353528 - L3b LINE CR1 -362 120 48 2 682 221 297 58 29 chr9 12723025 12723128 -111353044 - L2a LINE L2 -14 3412 3253 2 682 1354 91 10 10 chr9 12723169 12723368 -111352804 + L1_Mus3 LINE L1 6431 6629 -9 2 682 282 277 106 9 chr9 12725038 12725151 -111351021 + MLT2B3 LTR ERVL 2 125 -429 2 682 266 125 18 0 chr9 12725227 12725283 -111350889 - Lx3_Mus LINE L1 -1046 5963 5907 2 682 207 0 0 0 chr9 12725284 12725307 -111350865 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 682 6558 75 12 7 chr9 12725317 12726299 -111349873 - Lx3_Mus LINE L1 -1090 5919 4935 2 682 6214 113 51 11 chr9 12726299 12727286 -111348886 + Lx3_Mus LINE L1 5984 7009 0 2 682 1762 160 65 24 chr9 12727697 12728068 -111348104 - Lx2 LINE L1 -7 6990 6605 2 682 408 359 58 55 chr9 12728138 12728518 -111347654 + L1ME2 LINE L1 5704 6084 -80 2 682 4870 75 0 8 chr9 12728886 12729522 -111346650 - L1_Mus1 LINE L1 0 6567 5937 2 682 195 333 55 37 chr9 12729871 12729980 -111346192 + MIR SINE MIR 122 232 -30 2 682 3917 121 16 19 chr9 12732812 12733442 -111342730 - RMER17B LTR ERVK -330 628 1 2 682 719 22 11 0 chr9 12733692 12733781 -111342391 + (GA)n Simple_repeat Simple_repeat 2 91 0 2 682 25 65 0 0 chr9 12734008 12734054 -111342118 + AT_rich Low_complexity Low_complexity 1 46 0 2 682 277 312 61 20 chr9 12735107 12735254 -111340918 + Lx8 LINE L1 7061 7213 -260 3 682 24 0 0 0 chr9 12735254 12735278 -111340894 + AT_rich Low_complexity Low_complexity 1 24 0 3 682 255 254 0 0 chr9 12735285 12735344 -111340828 + RMER15 LTR ERVL 409 467 -108 3 682 321 135 0 0 chr9 12735419 12735471 -111340701 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 682 225 269 0 19 chr9 12735481 12735534 -111340638 + PB1D10 SINE Alu 45 96 -21 3 682 9239 83 44 6 chr9 12735653 12737099 -111339073 - Lx3_Mus LINE L1 -526 5360 3860 3 682 6736 87 6 5 chr9 12737099 12738388 -111337784 + Lx3_Mus LINE L1 5325 6611 -398 3 682 1075 181 119 8 chr9 12738397 12738648 -111337524 + RLTR46 LTR ERVK 42 320 0 3 682 2130 120 11 14 chr9 12738648 12739004 -111337168 + Lx3_Mus LINE L1 6606 6960 -49 3 682 35 0 0 0 chr9 12739036 12739071 -111337101 + AT_rich Low_complexity Low_complexity 1 35 0 3 682 234 337 10 101 chr9 12739090 12739288 -111336884 + B3A SINE B2 5 184 -14 3 682 2122 258 34 26 chr9 12739365 12739950 -111336222 - Lx5 LINE L1 0 7050 6461 3 682 33758 35 1 0 chr9 12739973 12745831 -111330341 + L1Md_T LINE L1 1 5589 -297 3 682 8939 6 0 3 chr9 12745831 12746830 -111329342 + L1Md_T LINE L1 5590 6585 0 3 682 23 0 0 0 chr9 12747157 12747180 -111328992 + AT_rich Low_complexity Low_complexity 1 23 0 3 682 1136 75 0 20 chr9 12747242 12747392 -111328780 + B1_Mus1 SINE Alu 2 148 0 3 682 1318 220 102 43 chr9 12747594 12747771 -111328401 + ORR1D1 LTR MaLR 1 176 -198 3 682 537 16 0 0 chr9 12747771 12747833 -111328339 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 682 1318 220 102 43 chr9 12747833 12748007 -111328165 + ORR1D1 LTR MaLR 177 373 -1 3 682 2662 95 63 0 chr9 12748503 12748882 -111327290 + MTB_Mm LTR MaLR 3 405 -2 3 682 2409 163 12 12 chr9 12749141 12749626 -111326546 - L1_Mur2 LINE L1 -1518 4359 3875 3 682 15298 149 26 11 chr9 12749657 12753273 -111322899 + L1VL2 LINE L1 398 4294 -1589 3 682 3957 154 16 59 chr9 12753275 12753774 -111322398 + Lx LINE L1 5913 6379 -275 3 682 1522 133 69 57 chr9 12753774 12754092 -111322080 - RLTRETN_Mm LTR ERVK 0 322 1 3 682 3957 154 16 59 chr9 12754092 12754367 -111321805 + Lx LINE L1 6380 6653 -1 3 682 640 265 42 107 chr9 12755348 12755602 -111320570 - MTE2a LTR MaLR 0 421 141 3 682 208 70 0 44 chr9 12755615 12755660 -111320512 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 3 682 1096 95 0 7 chr9 12755671 12755820 -111320352 - B1_Mus1 SINE Alu 0 148 1 3 682 27 0 0 0 chr9 12755986 12756013 -111320159 + AT_rich Low_complexity Low_complexity 1 27 0 3 682 387 0 0 0 chr9 12757604 12757647 -111318525 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 682 1576 214 94 48 chr9 12757699 12758135 -111318037 + RLTR20B3 LTR ERVK 93 548 -29 3 682 5184 208 69 75 chr9 12758254 12759149 -111317023 - L1_Mur3 LINE L1 -2503 3377 2469 3 682 225 0 0 0 chr9 12759149 12759174 -111316998 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 3 682 5184 208 69 75 chr9 12759174 12759555 -111316617 - L1_Mur3 LINE L1 -3412 2468 2110 3 682 1485 94 4 49 chr9 12759555 12759801 -111316371 - L1_Mus2 LINE L1 -1 6565 6331 3 682 5184 208 69 75 chr9 12759801 12759902 -111316270 - L1_Mur3 LINE L1 -3771 2109 2058 3 682 2451 71 115 0 chr9 12759902 12760268 -111315904 + IAPLTR2a LTR ERVK 4 411 0 3 682 1116 86 0 0 chr9 12760268 12760430 -111315742 + (TG)n Simple_repeat Simple_repeat 1 162 0 3 682 5184 208 69 75 chr9 12760430 12760776 -111315396 - L1_Mur3 LINE L1 -3823 2057 1659 3 682 3715 81 12 12 chr9 12760776 12761277 -111314895 - L1_Mus2 LINE L1 0 6566 6066 3 682 5184 208 69 75 chr9 12761277 12761356 -111314816 - L1_Mur3 LINE L1 -4222 1658 1583 3 682 26159 126 16 6 chr9 12761375 12764124 -111312048 - L1_Mus3 LINE L1 -3 6635 3868 3 682 3524 155 120 93 chr9 12764124 12765006 -111311166 - RMER17A2 LTR ERVK 0 906 1 3 682 26159 134 23 5 chr9 12765006 12768261 -111307911 - L1_Mus3 LINE L1 -2016 3867 535 3 682 3066 14 43 0 chr9 12768261 12768613 -111307559 - IAPLTR1_Mm LTR ERVK 0 367 1 3 682 13855 22 2 1 chr9 12768613 12770266 -111305906 - IAPEz-int LTR ERVK 0 6481 4827 3 682 29648 28 25 2 chr9 12770252 12773891 -111302281 - IAPEz-int LTR ERVK -2752 3729 8 3 682 3066 14 43 0 chr9 12773891 12774243 -111301929 - IAPLTR1_Mm LTR ERVK 0 367 1 3 682 327 280 33 47 chr9 12774243 12774393 -111301779 - L1_Mus3 LINE L1 -6094 540 393 3 682 518 351 92 29 chr9 12775656 12775929 -111300243 - MLT1A0 LTR MaLR -27 338 49 3 682 299 405 100 29 chr9 12776076 12776356 -111299816 + LTR33C LTR ERVL 250 549 -80 3 682 256 390 0 0 chr9 12776453 12776535 -111299637 + RSINE1 SINE B4 84 165 0 3 682 387 300 42 50 chr9 12777635 12777904 -111298268 + L1MA7 LINE L1 6023 6291 0 3 682 348 86 43 0 chr9 12778012 12778082 -111298090 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 3 682 330 228 29 22 chr9 12778104 12778211 -111297961 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 3 682 198 0 0 0 chr9 12778211 12778233 -111297939 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 682 330 228 29 22 chr9 12778233 12778264 -111297908 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 3 682 390 91 0 0 chr9 12778587 12778642 -111297530 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3 682 479 251 102 11 chr9 12778813 12778990 -111297182 + MER33 DNA MER1_type 23 215 -109 3 682 499 318 78 0 chr9 12779682 12779811 -111296361 + RSINE1 SINE B4 5 143 -22 3 682 369 0 0 0 chr9 12779820 12779861 -111296311 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 682 456 247 0 0 chr9 12780165 12780254 -111295918 + 5S rRNA rRNA 2 90 -31 3 682 288 296 35 69 chr9 12780166 12780282 -111295890 + AmnSINE1 SINE SINE 3 114 -461 3 682 1835 164 49 12 chr9 12780785 12781131 -111295041 - RLTR19-int LTR ERVK -2009 4128 3770 3 682 784 202 33 33 chr9 12781142 12781326 -111294846 - RLTR19-int LTR ERVK -1575 3831 3648 3 682 49 93 0 0 chr9 12781487 12781627 -111294545 + AT_rich Low_complexity Low_complexity 1 140 0 3 682 2743 188 8 17 chr9 12781976 12782506 -111293666 + Lx4B LINE L1 6464 6988 -70 3 682 1762 169 84 12 chr9 12783137 12783472 -111292700 + ORR1B2 LTR MaLR 1 359 -8 3 682 6481 188 80 12 chr9 12783472 12784880 -111291292 + ORR1B2-int LTR MaLR 7 1509 0 3 682 1254 181 157 29 chr9 12784890 12785203 -111290969 + ORR1B2 LTR MaLR 15 367 0 3 682 917 272 97 11 chr9 12786223 12786491 -111289681 - MTE2b LTR MaLR -88 291 1 3 682 631 296 66 28 chr9 12786567 12786779 -111289393 + B4 SINE B4 18 237 -55 3 682 198 0 0 0 chr9 12788927 12788949 -111287223 + (TCTG)n Simple_repeat Simple_repeat 3 24 0 3 682 360 64 0 0 chr9 12789709 12789756 -111286416 + (CTTA)n Simple_repeat Simple_repeat 1 47 0 3 682 919 60 30 0 chr9 12789847 12789980 -111286192 + (TTTTC)n Simple_repeat Simple_repeat 4 140 0 3 682 3087 179 30 2 chr9 12790001 12790594 -111285578 - Lx2 LINE L1 -350 5527 4918 3 682 9107 125 19 1 chr9 12790593 12791979 -111284193 + Lx2 LINE L1 5587 6996 -1 3 682 596 129 10 0 chr9 12793883 12793984 -111282188 + (AATAG)n Simple_repeat Simple_repeat 3 104 0 3 682 407 19 19 0 chr9 12794003 12794055 -111282117 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 3 682 17764 128 49 16 chr9 12794421 12799238 -111276934 + L1Md_F LINE L1 393 5579 -298 3 682 7653 59 3 28 chr9 12799239 12800251 -111275921 + L1Md_F2 LINE L1 5587 6573 -9 3 682 572 284 106 14 chr9 12800260 12800467 -111275705 + LTR40a LTR ERVL 12 237 -282 3 682 834 332 64 8 chr9 12800480 12800744 -111275428 + B4A SINE B4 12 290 -2 3 682 1715 175 6 63 chr9 12800790 12801125 -111275047 + MTC LTR MaLR 104 419 -2 3 682 390 69 0 0 chr9 12801127 12801185 -111274987 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 682 236 371 102 5 chr9 12801236 12801423 -111274749 + LTR40a LTR ERVL 249 453 -9 3 682 255 279 16 0 chr9 12801595 12801656 -111274516 - ID4_ SINE ID 0 83 22 3 682 224 318 30 0 chr9 12801695 12801761 -111274411 - ID4_ SINE ID -10 73 6 3 682 315 231 35 26 chr9 12801800 12801889 -111274283 - PB1D10 SINE Alu -19 101 13 3 682 38520 37 1 0 chr9 12802399 12807802 -111268370 - L1Md_T LINE L1 -1 6581 1170 3 682 4230 127 176 24 chr9 12807809 12808608 -111267564 - L1Md_T LINE L1 -5412 1204 284 3 682 492 297 21 46 chr9 12809760 12809954 -111266218 + B3A SINE B2 4 192 -6 3 682 4229 246 22 19 chr9 12810244 12811234 -111264938 + Lx5 LINE L1 6053 7045 -5 3 682 21 0 0 0 chr9 12811234 12811255 -111264917 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 1062 137 0 0 chr9 12811389 12811609 -111264563 + (GAAA)n Simple_repeat Simple_repeat 1 220 0 3 682 2217 84 16 3 chr9 12811640 12811952 -111264220 + L1_Mus2 LINE L1 6250 6565 -1 3 682 25 0 0 0 chr9 12812293 12812318 -111263854 + AT_rich Low_complexity Low_complexity 1 25 0 3 682 619 275 22 134 chr9 12812661 12812930 -111263242 - MTE2a LTR MaLR -140 239 1 3 682 462 36 0 0 chr9 12813034 12813090 -111263082 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 682 189 348 0 53 chr9 12814648 12814742 -111261430 + MIR SINE MIR 125 213 -49 3 682 537 115 0 13 chr9 12814943 12815022 -111261150 + BC1_Mm scRNA scRNA 2 79 -73 3 682 744 71 0 0 chr9 12815022 12815121 -111261051 + (GA)n Simple_repeat Simple_repeat 2 100 0 3 682 384 281 12 24 chr9 12816224 12816388 -111259784 + GA-rich Low_complexity Low_complexity 4 165 0 3 682 471 294 37 34 chr9 12817409 12817705 -111258467 - L1M3 LINE L1 -2579 3561 3265 3 682 312 265 52 38 chr9 12817681 12817881 -111258291 + L1MA9 LINE L1 5683 5889 -423 3 682 341 267 122 52 chr9 12818006 12818569 -111257603 - L1M2 LINE L1 -517 5774 5143 3 682 234 105 0 0 chr9 12818601 12818639 -111257533 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 682 665 70 0 10 chr9 12818642 12818743 -111257429 + (CTTTG)n Simple_repeat Simple_repeat 5 104 0 3 682 654 317 115 7 chr9 12818979 12819519 -111256653 - L1M2 LINE L1 -1296 4847 4250 3 682 333 0 0 0 chr9 12820738 12820775 -111255397 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 682 23 0 0 0 chr9 12820901 12820924 -111255248 + AT_rich Low_complexity Low_complexity 1 23 0 3 682 287 319 163 24 chr9 12820924 12821341 -111254831 - L1M2 LINE L1 -1920 4223 3749 3 682 1369 303 52 9 chr9 12821367 12821430 -111254742 - Lx6 LINE L1 -28 7432 7352 3 682 198 0 0 0 chr9 12821430 12821452 -111254720 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 682 1369 302 141 16 chr9 12821452 12822228 -111253944 - Lx6 LINE L1 -109 7351 6494 3 682 1647 98 25 50 chr9 12822613 12822891 -111253281 - L1_Mus2 LINE L1 -3 6563 6293 3 682 2045 67 41 0 chr9 12822891 12823159 -111253013 + L1_Mus2 LINE L1 6000 6278 -288 3 682 1161 254 179 12 chr9 12823500 12823902 -111252270 - Lx6 LINE L1 -1210 6250 5782 3 682 915 179 11 6 chr9 12823899 12824079 -111252093 - Lx6 LINE L1 -865 5015 4835 3 682 11604 214 33 9 chr9 12824078 12826806 -111249366 - Lx6 LINE L1 -1348 4532 1741 3 682 2517 108 5 21 chr9 12826812 12827198 -111248974 - L1_Mus4 LINE L1 -12 6626 6247 3 682 712 122 0 73 chr9 12827167 12827317 -111248855 - MusHAL1 LINE L1 -1031 1681 1543 3 682 4648 143 12 14 chr9 12827318 12828513 -111247659 - L1_Mus4 LINE L1 -395 6241 5040 3 682 10222 107 22 6 chr9 12828531 12830134 -111246038 + MusHAL1 LINE L1 801 2430 -282 3 682 1985 214 25 35 chr9 12830151 12830734 -111245438 - Lx6 LINE L1 -4128 1749 1180 3 682 2131 201 44 42 chr9 12830734 12830829 -111245343 - RLTR16 LTR ERVK 0 505 411 3 682 276 111 0 0 chr9 12830829 12830874 -111245298 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 682 2131 201 44 42 chr9 12830874 12831282 -111244890 - RLTR16 LTR ERVK -95 410 2 3 682 927 259 13 63 chr9 12831282 12831550 -111244622 - Lx6 LINE L1 -6549 1179 910 3 682 2110 121 16 0 chr9 12831552 12831874 -111244298 - ORR1A2 LTR MaLR 0 327 1 3 682 10074 156 49 18 chr9 12831876 12833778 -111242394 - ORR1A2-int LTR MaLR -2 1961 1 3 682 1857 113 7 21 chr9 12833778 12833876 -111242296 - ORR1A2 LTR MaLR 0 327 234 3 682 2607 112 39 8 chr9 12833876 12834264 -111241908 - MTB LTR MaLR 0 400 1 3 682 1857 113 7 21 chr9 12834264 12834445 -111241727 - ORR1A2 LTR MaLR -94 233 52 3 682 249 57 0 0 chr9 12835566 12835601 -111240571 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 682 737 293 197 24 chr9 12835603 12836019 -111240153 - Lx6 LINE L1 -26 7434 6947 4 682 647 254 21 0 chr9 12836053 12836195 -111239977 + B3A SINE B2 9 153 -45 4 682 317 43 21 0 chr9 12836212 12836259 -111239913 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 682 273 57 0 0 chr9 12836662 12836697 -111239475 + (TGG)n Simple_repeat Simple_repeat 1 35 0 4 682 472 327 57 90 chr9 12836731 12837010 -111239162 - B4 SINE B4 -2 290 21 4 682 188 319 64 0 chr9 12839129 12839176 -111236996 + L2a LINE L2 3350 3399 -27 4 682 21 82 0 0 chr9 12839230 12839279 -111236893 + AT_rich Low_complexity Low_complexity 1 49 0 4 682 549 111 29 5 chr9 12839324 12839423 -111236749 + B1_Mus2 SINE Alu 13 147 0 4 682 370 311 202 13 chr9 12839440 12839678 -111236494 + MLT1A LTR MaLR 48 330 -44 4 682 8393 27 0 0 chr9 12839794 12841509 -111234663 - L1Md_T LINE L1 -1 6584 4870 4 85 35077 32 1 7 chr9 12841510 12846877 -111229295 + L1Md_T LINE L1 254 5586 -297 4 683 8236 40 1 1 chr9 12846877 12847871 -111228301 + L1Md_T LINE L1 5587 6580 -2 4 683 210 118 0 0 chr9 12847899 12847933 -111228239 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 4 683 27614 51 0 4 chr9 12847933 12852482 -111223690 - L1Md_T LINE L1 -1007 4879 250 4 683 21 0 0 0 chr9 12852685 12852706 -111223466 + AT_rich Low_complexity Low_complexity 1 21 0 4 683 206 342 72 40 chr9 12853195 12853320 -111222852 - MIRb SINE MIR -123 145 17 4 683 590 319 97 35 chr9 12854748 12855298 -111220874 + L1_Mur3 LINE L1 5171 5803 -497 4 683 591 228 14 62 chr9 12855942 12856087 -111220085 + Lx8 LINE L1 7010 7147 -326 4 683 361 268 76 23 chr9 12856150 12856322 -111219850 + Lx8 LINE L1 7293 7473 0 4 683 261 208 0 0 chr9 12857250 12857322 -111218850 + GA-rich Low_complexity Low_complexity 4 75 0 4 683 958 257 49 20 chr9 12857357 12857603 -111218569 - MTEa LTR MaLR -101 278 26 4 683 894 311 61 14 chr9 12857948 12858241 -111217931 - ORR1D2 LTR MaLR 0 370 64 4 683 515 260 24 0 chr9 12858593 12858716 -111217456 - ID_B1 SINE B4 -19 205 80 4 683 30 69 0 0 chr9 12858980 12859038 -111217134 + AT_rich Low_complexity Low_complexity 1 58 0 4 683 16358 77 14 2 chr9 12860377 12860658 -111215514 + L1Md_F2 LINE L1 3196 3476 -2407 4 683 204 40 0 0 chr9 12860658 12860683 -111215489 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 4 683 16358 77 14 2 chr9 12860683 12862757 -111213415 + L1Md_F2 LINE L1 3477 5579 -304 4 683 7690 59 4 5 chr9 12862761 12863755 -111212417 + L1Md_F2 LINE L1 5587 6579 -3 4 683 260 372 59 46 chr9 12863755 12863907 -111212265 + B4A SINE B4 62 215 -77 4 683 312 91 0 0 chr9 12864290 12864334 -111211838 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 4 683 231 273 125 65 chr9 12865176 12865313 -111210859 + MIRc SINE MIR 94 239 -29 4 683 258 56 0 0 chr9 12866893 12866929 -111209243 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 683 588 129 27 13 chr9 12866944 12867093 -111209079 + (TA)n Simple_repeat Simple_repeat 2 152 0 4 683 766 309 29 14 chr9 12867121 12867331 -111208841 + B4A SINE B4 74 286 -6 4 683 215 189 0 19 chr9 12867374 12867428 -111208744 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 4 683 768 200 31 67 chr9 12868015 12868208 -111207964 + B2_Mm2 SINE B2 1 186 -9 4 683 709 332 21 52 chr9 12869151 12869365 -111206807 + MTEb LTR MaLR 16 220 -159 4 683 7042 60 12 0 chr9 12869365 12870247 -111205925 + RLTR13B1 LTR ERVK 1 893 0 4 683 709 332 21 52 chr9 12870247 12870359 -111205813 + MTEb LTR MaLR 221 331 -48 4 683 482 265 87 13 chr9 12870389 12870538 -111205634 + MTE-int LTR MaLR 4 163 -1417 4 683 301 313 118 24 chr9 12870557 12870642 -111205530 + RSINE1 SINE B4 2 94 -71 4 683 507 318 50 61 chr9 12870801 12871079 -111205093 + RLTR26 LTR ERVK 187 461 -181 4 683 239 384 40 10 chr9 12871279 12871379 -111204793 + RSINE1 SINE B4 61 163 -2 4 683 646 194 28 7 chr9 12871402 12871547 -111204625 + Lx LINE L1 6502 6649 -5 4 683 236 242 0 50 chr9 12871550 12871650 -111204522 + A-rich Low_complexity Low_complexity 1 95 0 4 683 845 330 172 31 chr9 12871715 12872291 -111203881 + MTE-int LTR MaLR 559 1215 -365 4 683 479 66 13 0 chr9 12872344 12872420 -111203752 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 683 32 0 0 0 chr9 12873201 12873233 -111202939 + AT_rich Low_complexity Low_complexity 1 32 0 4 683 607 254 19 77 chr9 12873305 12873514 -111202658 + B3A SINE B2 2 198 0 4 683 683 299 89 4 chr9 12873539 12873774 -111202398 + Lx8 LINE L1 7073 7327 -146 4 683 1431 224 78 6 chr9 12873827 12874146 -111202026 + ORR1D1 LTR MaLR 33 374 0 4 683 862 316 55 18 chr9 12874364 12875069 -111201103 + Lx8 LINE L1 5606 6345 -1128 4 683 1146 275 162 0 chr9 12875090 12875534 -111200638 + Lx8 LINE L1 6429 6944 -529 4 683 926 232 137 50 chr9 12875547 12875837 -111200335 + ORR1D2 LTR MaLR 1 349 -21 4 683 1573 43 5 19 chr9 12875837 12876052 -111200120 + L1Md_F3 LINE L1 6373 6584 0 4 683 926 230 135 52 chr9 12876052 12876076 -111200096 + ORR1D2 LTR MaLR 350 370 0 4 683 229 320 86 7 chr9 12876088 12876239 -111199933 + Lx8 LINE L1 7001 7163 -310 4 683 190 161 0 61 chr9 12876499 12876565 -111199607 + A-rich Low_complexity Low_complexity 3 64 0 4 683 697 291 6 0 chr9 12877679 12877844 -111198328 - B3 SINE B2 -10 206 41 4 683 240 404 52 0 chr9 12878551 12878744 -111197428 - L2 LINE L2 -1866 1553 1351 4 683 297 0 0 0 chr9 12880295 12880328 -111195844 + (A)n Simple_repeat Simple_repeat 1 33 0 4 683 26 0 0 0 chr9 12881031 12881057 -111195115 + AT_rich Low_complexity Low_complexity 1 26 0 4 683 2841 182 95 13 chr9 12881322 12882077 -111194095 + RMER19B LTR ERVK 1 895 -7 4 683 769 318 75 31 chr9 12883039 12883610 -111192562 + L1_Mur3 LINE L1 372 967 -6761 4 683 7133 200 110 36 chr9 12883614 12884056 -111192116 + L1_Mur3 LINE L1 2862 3366 -2514 4 683 2473 111 131 21 chr9 12884056 12884490 -111191682 + RLTR45 LTR ERVK 1 482 0 4 683 7133 200 110 36 chr9 12884490 12884740 -111191432 + L1_Mur3 LINE L1 3367 3660 -2220 4 683 1701 16 5 0 chr9 12884740 12884932 -111191240 + B2_Mm1t SINE B2 1 193 0 4 683 7133 200 110 36 chr9 12884932 12885597 -111190575 + L1_Mur3 LINE L1 3661 4348 -1532 4 683 3131 72 7 5 chr9 12885597 12886017 -111190155 - BGLII LTR ERVK 0 421 1 4 683 7133 200 110 36 chr9 12886017 12886421 -111189751 + L1_Mur3 LINE L1 4349 4766 -1114 4 683 648 0 0 0 chr9 12886421 12886493 -111189679 + (AATTG)n Simple_repeat Simple_repeat 4 75 0 4 683 7133 200 110 36 chr9 12886493 12886996 -111189176 + L1_Mur3 LINE L1 4767 5296 -584 4 683 1208 43 0 0 chr9 12886996 12887137 -111189035 + B1_Mm SINE Alu 1 141 -6 4 683 414 0 0 0 chr9 12887138 12887184 -111188988 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 683 1877 124 84 7 chr9 12887233 12887542 -111188630 - RLTR23 LTR ERV1 0 430 98 4 683 335 83 17 0 chr9 12887567 12887627 -111188545 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 4 683 444 153 165 0 chr9 12887637 12887722 -111188450 - RLTR23 LTR ERV1 -330 100 2 4 683 2093 258 7 15 chr9 12887723 12888262 -111187910 + Lx7 LINE L1 6269 6803 -893 4 683 561 247 3 124 chr9 12888262 12888609 -111187563 + RMER17C LTR ERVK 1 305 -105 4 683 1404 231 121 25 chr9 12888671 12889067 -111187105 + Lx7 LINE L1 6801 7234 -462 4 683 279 0 0 0 chr9 12889112 12889143 -111187029 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 683 21 0 0 0 chr9 12889871 12889892 -111186280 + AT_rich Low_complexity Low_complexity 1 21 0 4 683 1145 298 55 36 chr9 12889901 12890532 -111185640 + Lx8 LINE L1 6651 7293 -180 4 683 22 35 0 0 chr9 12890704 12890733 -111185439 + AT_rich Low_complexity Low_complexity 1 29 0 4 683 248 250 66 0 chr9 12891054 12891130 -111185042 - L1M5 LINE L1 -479 5761 5681 4 683 218 189 0 0 chr9 12891140 12891177 -111184995 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 683 309 322 69 0 chr9 12891267 12891354 -111184818 - PB1D7 SINE Alu -10 110 18 4 683 6321 117 15 18 chr9 12891429 12892821 -111183351 - L1_Mus3 LINE L1 -1 6637 5251 4 683 6741 130 9 3 chr9 12892820 12893957 -111182215 + L1_Mus3 LINE L1 4106 5249 -634 4 683 526 336 86 52 chr9 12894176 12894443 -111181729 - B4 SINE B4 -14 278 3 4 683 2040 80 3 3 chr9 12894476 12894766 -111181406 - L1_Mus2 LINE L1 -242 6324 6035 4 683 189 0 0 0 chr9 12895781 12895802 -111180370 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 683 243 245 0 0 chr9 12895802 12895851 -111180321 - ID_B1 SINE B4 -4 220 172 4 683 240 184 0 0 chr9 12896640 12896689 -111179483 + (TTG)n Simple_repeat Simple_repeat 3 51 0 4 683 249 119 0 0 chr9 12897363 12897405 -111178767 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 4 683 702 250 97 35 chr9 12897405 12897633 -111178539 - Lx8 LINE L1 -143 7330 7089 4 683 3539 36 84 0 chr9 12897723 12898161 -111178011 - IAPLTR2_Mm LTR ERVK 0 475 1 4 683 243 0 0 0 chr9 12898986 12899013 -111177159 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 683 249 377 43 54 chr9 12899418 12899603 -111176569 - MIRb SINE MIR -5 263 81 4 683 664 290 13 8 chr9 12899754 12899947 -111176225 + B3A SINE B2 25 216 0 4 683 247 243 25 86 chr9 12900477 12900558 -111175614 + MTB LTR MaLR 193 268 -132 4 683 285 313 156 6 chr9 12901290 12901457 -111174715 - LTR79 LTR ERVL -6 521 330 4 683 189 0 0 0 chr9 12901819 12901840 -111174332 + (CTAAG)n Simple_repeat Simple_repeat 3 23 0 4 683 23 0 0 0 chr9 12902555 12902578 -111173594 + AT_rich Low_complexity Low_complexity 1 23 0 4 683 576 65 0 0 chr9 12902772 12902849 -111173323 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 683 7430 11 2 0 chr9 12903524 12904344 -111171828 - RLTR13B2 LTR ERVK 0 822 1 4 683 4747 171 50 26 chr9 12904360 12905247 -111170925 + RMER13B LTR ERVK 1 908 0 4 683 1737 191 79 0 chr9 12905556 12905896 -111170276 + ORR1B2 LTR MaLR 1 367 0 4 683 270 164 0 0 chr9 12906059 12906114 -111170058 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 683 16098 164 21 2 chr9 12906460 12908938 -111167234 - L1_Mur1 LINE L1 -550 5336 2812 4 683 240 0 24 48 chr9 12908938 12908980 -111167192 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 4 683 16098 164 21 2 chr9 12908980 12909651 -111166521 - L1_Mur1 LINE L1 -3075 2811 2130 4 683 666 179 165 21 chr9 12909657 12909851 -111166321 + MTD LTR MaLR 196 417 -2 4 683 271 251 42 12 chr9 12909923 12910088 -111166084 + (TA)n Simple_repeat Simple_repeat 2 171 0 4 683 222 259 19 0 chr9 12910195 12910249 -111165923 + ID4 SINE ID 14 68 -15 4 683 482 289 172 32 chr9 12910265 12910544 -111165628 + Tigger7 DNA MER2_type 97 414 -2077 4 683 1181 68 7 0 chr9 12910573 12910719 -111165453 - B1_Mus1 SINE Alu 0 148 2 4 683 195 42 0 0 chr9 12910746 12910770 -111165402 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 4 683 4410 105 61 19 chr9 12910795 12910846 -111165326 - MusHAL1 LINE L1 -1792 920 870 5 683 200 35 35 0 chr9 12910846 12910875 -111165297 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 683 4410 105 61 19 chr9 12910875 12911674 -111164498 - MusHAL1 LINE L1 -1843 869 34 5 683 1125 63 7 0 chr9 12911686 12911828 -111164344 - B1_Mus1 SINE Alu -1 147 5 5 683 4383 159 38 51 chr9 12911863 12912804 -111163368 - L1VL2 LINE L1 -5320 1015 87 5 683 24 0 0 0 chr9 12912975 12912999 -111163173 + AT_rich Low_complexity Low_complexity 1 24 0 5 683 685 298 92 17 chr9 12913000 12913481 -111162691 + Lx9 LINE L1 5613 6194 -1279 5 683 351 0 0 0 chr9 12913481 12913520 -111162652 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 683 522 335 72 18 chr9 12913520 12913823 -111162349 + Lx9 LINE L1 6195 6656 -988 5 683 330 192 13 64 chr9 12913989 12914067 -111162105 - HAL1-3A_ME LINE L1 -810 2048 1975 5 683 266 196 0 0 chr9 12914113 12914164 -111162008 - Lx9 LINE L1 -206 7438 7388 5 683 204 97 0 0 chr9 12914752 12914783 -111161389 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 683 3015 82 2 2 chr9 12915097 12915490 -111160682 - MTA_Mm LTR MaLR 0 396 4 5 683 35330 28 1 8 chr9 12916135 12921324 -111154848 + L1Md_A LINE L1 441 5585 -298 5 683 8347 38 0 1 chr9 12921325 12922322 -111153850 + L1Md_A LINE L1 5587 6582 0 5 683 33 25 0 0 chr9 12922452 12922492 -111153680 + AT_rich Low_complexity Low_complexity 1 40 0 5 683 856 279 22 9 chr9 12923271 12923495 -111152677 - MTEa LTR MaLR 0 379 153 5 683 922 245 19 5 chr9 12923543 12923748 -111152424 - B3 SINE B2 -7 209 2 5 683 2286 181 80 11 chr9 12923925 12924389 -111151783 + RLTR1 LTR ERV1 129 624 0 5 683 237 162 46 81 chr9 12924396 12924483 -111151689 + L1MA5 LINE L1 6215 6298 -2 5 683 324 253 10 52 chr9 12924917 12925013 -111151159 + B2_Mm2 SINE B2 6 97 -98 5 683 1727 146 55 61 chr9 12926611 12926939 -111149233 + ORR1A3 LTR MaLR 1 326 0 5 683 233 209 367 44 chr9 12927139 12927229 -111148943 - B2_Mm2 SINE B2 -76 119 1 5 683 957 170 7 195 chr9 12927275 12927552 -111148620 + URR1A DNA MER1_type 2 226 0 5 683 4414 96 18 2 chr9 12927866 12928491 -111147681 - L1_Mus1 LINE L1 0 6567 5933 5 683 198 103 0 0 chr9 12928521 12928550 -111147622 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 683 399 265 39 19 chr9 12928571 12928675 -111147497 - ID_B1 SINE B4 -8 216 111 5 683 687 321 55 62 chr9 12930790 12931082 -111145090 + B4A SINE B4 3 292 0 5 683 203 317 0 0 chr9 12931254 12931314 -111144858 + MIRb SINE MIR 106 165 -103 5 683 1631 228 56 0 chr9 12931821 12932159 -111144013 + MTD LTR MaLR 1 357 -62 5 683 270 81 0 0 chr9 12932175 12932212 -111143960 + (A)n Simple_repeat Simple_repeat 1 37 0 5 683 224 299 83 33 chr9 12933036 12933157 -111143015 - L2a LINE L2 -17 3409 3283 5 683 1541 30 0 25 chr9 12933157 12933359 -111142813 + L1Md_F3 LINE L1 6374 6570 -14 5 683 2138 159 71 0 chr9 12934314 12934678 -111141494 + ORR1B1 LTR MaLR 3 392 -2 5 683 1075 65 0 35 chr9 12934803 12934946 -111141226 + B1_Mus2 SINE Alu 1 138 -9 5 683 252 0 0 0 chr9 12934946 12934974 -111141198 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 683 619 245 178 25 chr9 12935241 12935546 -111140626 + ORR1E LTR MaLR 8 379 0 5 683 7070 83 26 0 chr9 12935599 12935674 -111140498 - L1_Mus3 LINE L1 0 6638 6564 5 683 183 42 0 0 chr9 12935674 12935698 -111140474 + (CCCCCT)n Simple_repeat Simple_repeat 1 24 0 5 683 7070 83 26 0 chr9 12935698 12936630 -111139542 - L1_Mus3 LINE L1 -75 6563 5607 5 683 243 0 0 0 chr9 12936645 12936672 -111139500 + (A)n Simple_repeat Simple_repeat 1 27 0 5 683 1632 92 0 21 chr9 12936672 12936915 -111139257 + L1_Mm LINE L1 5394 5631 -252 5 683 180 0 0 0 chr9 12937456 12937476 -111138696 + (A)n Simple_repeat Simple_repeat 1 20 0 5 683 929 303 105 43 chr9 12937513 12937951 -111138221 + MT2A LTR ERVL 59 523 -10 5 683 15394 128 14 3 chr9 12938072 12941359 -111134813 + L1_Mus1 LINE L1 382 3705 -2178 5 683 4243 53 0 4 chr9 12941362 12941914 -111134258 + L1Md_F2 LINE L1 6010 6559 -23 5 683 13402 97 14 19 chr9 12941917 12944809 -111131363 + L1_Mus1 LINE L1 3706 6566 -1 5 683 243 0 0 0 chr9 12945874 12945901 -111130271 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 683 495 275 160 17 chr9 12945928 12946165 -111130007 - B4A SINE B4 -18 274 4 5 683 1210 205 93 62 chr9 12946241 12946594 -111129578 - RLTR28B LTR ERVL 0 481 118 5 683 279 216 62 0 chr9 12946881 12946978 -111129194 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 683 321 289 31 0 chr9 12947044 12947141 -111129031 - B2_Mm2 SINE B2 -95 100 1 5 683 618 49 0 0 chr9 12947193 12947275 -111128897 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 683 23 0 0 0 chr9 12947435 12947458 -111128714 + AT_rich Low_complexity Low_complexity 1 23 0 5 683 1856 133 33 60 chr9 12949371 12949707 -111126465 - ORR1A2 LTR MaLR 0 327 1 5 683 2703 46 0 20 chr9 12950073 12950426 -111125746 - L1_Mus1 LINE L1 0 6567 6222 5 683 3865 64 6 0 chr9 12950426 12950911 -111125261 + L1_Mus1 LINE L1 5735 6222 -345 5 683 194 290 191 48 chr9 12951200 12951305 -111124867 + MIRm SINE MIR 3 122 -154 5 683 378 0 0 0 chr9 12951420 12951462 -111124710 + (A)n Simple_repeat Simple_repeat 1 42 0 5 683 305 318 92 79 chr9 12952154 12952383 -111123789 + LTR41 LTR ERVL 1 232 -536 5 683 753 200 431 0 chr9 12953931 12954186 -111121986 - ORR1B2 LTR MaLR 0 367 3 5 683 275 321 97 44 chr9 12954222 12954450 -111121722 + ERVL-E-int LTR ERVL 1350 1589 -4078 5 683 523 73 42 0 chr9 12954850 12954946 -111121226 + (CAGAGA)n Simple_repeat Simple_repeat 2 101 0 5 683 701 300 36 122 chr9 12955840 12956284 -111119888 - RLTR23 LTR ERV1 -17 413 8 5 683 777 138 7 7 chr9 12956306 12956445 -111119727 + L1_Mur2 LINE L1 5182 5320 -557 5 683 254 246 16 0 chr9 12956724 12956785 -111119387 + ERVL-E-int LTR ERVL 4213 4274 -1393 5 683 849 273 28 80 chr9 12957092 12957406 -111118766 + MER67C LTR ERV1 3 329 -382 5 683 333 0 0 0 chr9 12957952 12957989 -111118183 + (TTA)n Simple_repeat Simple_repeat 3 39 0 5 683 1470 277 118 9 chr9 12957997 12958611 -111117561 - Lx5 LINE L1 -18 7032 6455 5 683 497 119 4 10 chr9 12958617 12958710 -111117462 - L1_Mur2 LINE L1 -1196 4950 4858 5 683 237 329 106 37 chr9 12959227 12959388 -111116784 + RMER5 LTR ERV1 363 534 0 5 683 336 224 153 0 chr9 12960069 12960154 -111116018 + RCHARR1 DNA MER1_type 3 100 -874 5 683 413 266 79 16 chr9 12960629 12960755 -111115417 - MER106B DNA MER1_type -2 1057 924 5 683 2076 219 20 67 chr9 12961024 12961561 -111114611 + RMER1B Other Other 551 1062 -4 5 683 26 50 0 0 chr9 12961659 12961699 -111114473 + AT_rich Low_complexity Low_complexity 1 40 0 5 683 468 279 42 68 chr9 12961790 12961982 -111114190 + B3A SINE B2 7 193 -5 5 683 366 298 35 9 chr9 12962184 12962373 -111113799 - L1ME3B LINE L1 -307 5866 5678 5 683 187 190 35 0 chr9 12962612 12962670 -111113502 + GA-rich Low_complexity Low_complexity 1 60 0 5 683 398 189 0 26 chr9 12962844 12962920 -111113252 - ORR1A4 LTR MaLR -98 231 158 5 683 274 322 57 35 chr9 12963086 12963254 -111112918 - MIR SINE MIR -31 237 61 5 683 5722 18 0 0 chr9 12963722 12964375 -111111797 - L1Md_A LINE L1 0 6582 5930 5 683 565 294 67 6 chr9 12964548 12964712 -111111460 - B3A SINE B2 -24 174 1 5 683 292 314 66 62 chr9 12964747 12964991 -111111181 - RLTR15 LTR ERVK -67 292 48 5 683 202 146 24 0 chr9 12965266 12965307 -111110865 + T-rich Low_complexity Low_complexity 3 44 0 5 683 280 336 49 28 chr9 12965309 12965453 -111110719 - B1_Mur1 SINE Alu 0 149 3 5 683 1143 299 63 8 chr9 12965933 12966284 -111109888 + MTE2b LTR MaLR 10 379 0 5 683 374 357 121 72 chr9 12966297 12966973 -111109199 - L1M4 LINE L1 -5833 709 1 5 683 357 310 60 33 chr9 12967035 12967185 -111108987 + L3 LINE CR1 3362 3515 -974 5 683 30 77 0 0 chr9 12967275 12967340 -111108832 + AT_rich Low_complexity Low_complexity 1 65 0 5 683 2608 138 9 0 chr9 12967415 12967835 -111108337 - L1_Mus3 LINE L1 -438 5445 5022 5 683 7106 96 45 1 chr9 12967833 12968964 -111107208 + L1_Mus3 LINE L1 5461 6638 0 5 683 21 57 0 0 chr9 12968966 12969001 -111107171 + AT_rich Low_complexity Low_complexity 1 35 0 5 683 1135 68 0 7 chr9 12969127 12969274 -111106898 + B1_Mus1 SINE Alu 2 147 -1 5 683 477 297 8 8 chr9 12969377 12969496 -111106676 - B3A SINE B2 -66 132 14 5 683 303 203 0 0 chr9 12969539 12969608 -111106564 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 683 1172 82 0 0 chr9 12970827 12970974 -111105198 + B1_Mus1 SINE Alu 2 148 0 5 683 219 139 0 0 chr9 12970974 12971010 -111105162 + (A)n Simple_repeat Simple_repeat 1 36 0 5 683 293 275 0 48 chr9 12974299 12974486 -111101686 + (CATAC)n Simple_repeat Simple_repeat 1 178 0 5 683 453 145 0 0 chr9 12974490 12974566 -111101606 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 683 935 319 152 5 chr9 12975054 12975615 -111100557 + Charlie1a DNA MER1_type 263 905 -550 5 683 787 255 31 10 chr9 12975619 12975813 -111100359 + B3A SINE B2 1 198 0 5 683 297 308 38 13 chr9 12975841 12975999 -111100173 - L1M5 LINE L1 -1810 4336 4175 5 684 560 299 161 12 chr9 12976218 12976472 -111099700 + B4 SINE B4 1 292 0 5 684 216 0 0 0 chr9 12976490 12976514 -111099658 + (CCA)n Simple_repeat Simple_repeat 3 26 0 5 684 9675 208 117 24 chr9 12976807 12978131 -111098041 - L1_Mur2 LINE L1 -616 5261 3853 5 684 255 79 0 0 chr9 12978131 12978169 -111098003 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 684 9675 208 117 24 chr9 12978169 12979519 -111096653 - L1_Mur2 LINE L1 -2025 3852 2339 5 684 360 0 0 0 chr9 12979570 12979610 -111096562 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 684 381 301 43 17 chr9 12980155 12980270 -111095902 - RSINE1 SINE B4 0 165 48 5 684 542 296 12 42 chr9 12980815 12980981 -111095191 - RSINE1 SINE B4 0 165 5 6 684 32 0 0 0 chr9 12981015 12981047 -111095125 + AT_rich Low_complexity Low_complexity 1 32 0 6 684 1099 238 40 12 chr9 12981430 12981681 -111094491 + L1VL2 LINE L1 123 380 -5955 6 684 9557 100 22 91 chr9 12981678 12983755 -111092417 + L1VL2 LINE L1 687 2620 -995 6 684 3686 108 2 7 chr9 12983758 12983832 -111092340 - MusHAL1 LINE L1 -532 2180 2107 6 684 208 0 62 0 chr9 12983832 12983864 -111092308 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 6 684 3686 108 2 7 chr9 12983864 12984376 -111091796 - MusHAL1 LINE L1 -606 2106 1597 6 684 5557 155 108 10 chr9 12984382 12986316 -111089856 + Lx LINE L1 4506 6650 -4 6 684 939 240 96 39 chr9 12986569 12986656 -111089516 - RLTR20C LTR ERVK -150 428 368 6 684 330 115 0 0 chr9 12986656 12986708 -111089464 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 684 1029 211 103 66 chr9 12986708 12987062 -111089110 - RLTR20C LTR ERVK -211 367 1 6 684 318 167 165 10 chr9 12987122 12987219 -111088953 - MYSERV16_I-int LTR ERVK -21 2305 2194 6 684 216 0 0 0 chr9 12987233 12987257 -111088915 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 6 684 625 129 0 0 chr9 12987260 12987353 -111088819 - B1_Mm SINE Alu 0 147 55 6 684 1812 165 148 59 chr9 12987353 12987661 -111088511 - MYSERV16_I-int LTR ERVK -184 2142 1777 6 684 190 244 71 24 chr9 12987661 12987745 -111088427 - L3 LINE CR1 -1646 2843 2756 6 684 1812 165 148 59 chr9 12987745 12988338 -111087834 - MYSERV16_I-int LTR ERVK -184 1776 1070 6 684 4014 177 75 43 chr9 12988346 12989394 -111086778 - MYSERV16_I-int LTR ERVK -1449 1393 1 6 684 4838 53 5 0 chr9 12989948 12990555 -111085617 - L1_Mus1 LINE L1 0 6567 5958 6 684 2744 69 28 0 chr9 12990555 12991003 -111085169 + L1_Mus1 LINE L1 5500 5957 -610 6 684 1524 156 37 4 chr9 12991218 12991488 -111084684 + Lx LINE L1 6376 6654 0 6 684 234 105 0 0 chr9 12991507 12991545 -111084627 + (TAA)n Simple_repeat Simple_repeat 2 39 0 6 684 829 246 47 104 chr9 12991763 12992199 -111083973 - RLTR20D LTR ERVK -12 566 1 6 684 5776 195 72 8 chr9 12992212 12993371 -111082801 - Lx5 LINE L1 -40 7010 5778 6 684 7580 85 1 7 chr9 12993360 12995054 -111081118 - L1_Mus1 LINE L1 0 6567 4885 6 684 343 77 0 0 chr9 12995053 12995105 -111081067 + L1_Mm LINE L1 3820 3871 -2012 6 684 6638 151 19 38 chr9 12995103 12995882 -111080290 + L1_Mur1 LINE L1 2121 2873 -3013 6 684 858 70 0 0 chr9 12995882 12995996 -111080176 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 6 684 6638 151 19 38 chr9 12995996 12996551 -111079621 + L1_Mur1 LINE L1 2874 3429 -2457 6 684 5803 179 30 28 chr9 12996562 12997234 -111078938 - L1_Mur2 LINE L1 -3136 2741 2052 6 684 432 0 0 0 chr9 12997234 12997282 -111078890 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 684 5803 179 30 28 chr9 12997282 12997831 -111078341 - L1_Mur2 LINE L1 -3826 2051 1511 6 684 462 36 0 0 chr9 12997831 12997887 -111078285 + (TCC)n Simple_repeat Simple_repeat 2 57 0 6 684 5803 179 30 28 chr9 12997887 12997931 -111078241 - L1_Mur2 LINE L1 -4367 1510 1473 6 684 810 132 8 0 chr9 12998031 12998152 -111078020 + B2_Mm2 SINE B2 2 123 -72 6 684 9977 28 1 0 chr9 12998152 13000000 -111076172 - L1Md_A LINE L1 -2 6580 4732 6 684 26470 63 2 22 chr9 13000000 13004434 -111071738 - L1Md_F LINE L1 -1152 4731 389 1 684 1367 163 35 5 chr9 13004434 13004753 -111071419 - L1_Mur2 LINE L1 -4373 1504 1174 2 684 1783 40 18 0 chr9 13004753 13004976 -111071196 - L1Md_F2 LINE L1 -12 6570 6344 3 684 874 175 47 20 chr9 13004976 13005064 -111071108 - L1_Mur2 LINE L1 -6555 1173 1087 2 684 229 211 0 0 chr9 13005314 13005366 -111070806 + A-rich Low_complexity Low_complexity 1 52 0 4 684 204 226 31 46 chr9 13005458 13005523 -111070649 + GA-rich Low_complexity Low_complexity 1 64 0 5 684 198 103 0 0 chr9 13005948 13005977 -111070195 + (A)n Simple_repeat Simple_repeat 1 29 0 6 684 336 169 0 0 chr9 13006080 13006157 -111070015 + GA-rich Low_complexity Low_complexity 2 78 0 7 684 240 35 0 0 chr9 13006604 13006633 -111069539 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 684 301 364 49 14 chr9 13006872 13007014 -111069158 - MLT2F LTR ERVL -317 346 200 9 684 504 32 0 0 chr9 13007612 13007674 -111068498 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 684 283 262 0 0 chr9 13007677 13007738 -111068434 - B3A SINE B2 -137 61 1 1 684 21 57 0 0 chr9 13007766 13007801 -111068371 + AT_rich Low_complexity Low_complexity 1 35 0 1 684 210 105 0 0 chr9 13007912 13007950 -111068222 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 684 665 278 110 17 chr9 13008740 13009166 -111067006 - Lx7 LINE L1 -1793 5903 5434 1 684 2672 179 86 6 chr9 13009242 13009743 -111066429 + RLTR20B2 LTR ERVK 1 541 -19 1 684 423 0 0 0 chr9 13011727 13011774 -111064398 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 684 357 287 0 11 chr9 13011804 13011892 -111064280 - B1_Mur2 SINE Alu -27 122 36 1 684 273 363 37 81 chr9 13012482 13012779 -111063393 + ORR1D2 LTR MaLR 87 370 0 1 684 234 0 0 0 chr9 13013209 13013235 -111062937 + (A)n Simple_repeat Simple_repeat 1 26 0 1 684 396 59 0 0 chr9 13013350 13013401 -111062771 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 2 684 234 0 0 0 chr9 13014062 13014088 -111062084 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 684 403 298 28 0 chr9 13014954 13015095 -111061077 + L1_Rod LINE L1 5344 5488 -359 2 684 204 254 17 17 chr9 13017054 13017114 -111059058 + GA-rich Low_complexity Low_complexity 3 62 0 2 684 526 242 14 122 chr9 13017180 13017421 -111058751 + L1VL1 LINE L1 29 400 -6022 2 684 296 296 95 37 chr9 13017509 13017751 -111058421 + L1Md_F2 LINE L1 552 807 -5809 2 684 2144 176 5 0 chr9 13017755 13018163 -111058009 + L1Md_F2 LINE L1 725 1134 -5482 2 684 2091 64 136 0 chr9 13018163 13018458 -111057714 + L1_Mus1 LINE L1 6233 6567 0 2 684 1294 102 5 0 chr9 13018459 13018664 -111057508 + L1Md_F2 LINE L1 3922 4127 -1756 2 684 5312 125 31 34 chr9 13018670 13019575 -111056597 + RLTR13D6 LTR ERVK 1 902 0 2 684 10025 85 1 11 chr9 13019575 13021049 -111055123 + L1Md_F2 LINE L1 4129 5586 -297 2 684 8347 31 3 1 chr9 13021050 13022029 -111054143 + L1Md_F2 LINE L1 5588 6568 -14 2 684 5661 91 1 13 chr9 13022036 13022829 -111053343 + L1_Mus2 LINE L1 5783 6566 0 2 684 3963 187 26 6 chr9 13022910 13023758 -111052414 - Lx2 LINE L1 -491 5386 4522 2 684 6459 124 22 22 chr9 13023756 13024989 -111051183 + Lx2 LINE L1 5409 6645 -352 2 684 1329 131 4 18 chr9 13024987 13025212 -111050960 + Lx2 LINE L1 6775 6996 -1 2 684 253 0 54 0 chr9 13025806 13025843 -111050329 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 684 30540 94 4 8 chr9 13026363 13031534 -111044638 + L1Md_F2 LINE L1 441 5586 -297 3 684 7632 62 11 6 chr9 13031534 13032521 -111043651 + L1Md_F2 LINE L1 5587 6578 -4 3 684 735 313 129 46 chr9 13033315 13033640 -111042532 + MTE2b LTR MaLR 5 356 -23 3 684 2672 269 62 38 chr9 13033750 13034710 -111041462 + Lx9 LINE L1 6490 7472 -172 3 684 4298 69 58 7 chr9 13034759 13035342 -111040830 + L1Md_F2 LINE L1 5958 6570 -12 3 684 594 341 17 84 chr9 13035409 13035707 -111040465 - MTEa LTR MaLR -52 327 50 3 684 35393 24 2 7 chr9 13036281 13041487 -111034685 + L1Md_T LINE L1 413 5586 -297 3 684 8266 38 4 0 chr9 13041487 13042478 -111033694 + L1Md_T LINE L1 5587 6581 -1 3 684 17532 21 0 1 chr9 13042478 13044613 -111031559 + L1Md_T LINE L1 3453 5586 -297 3 684 8511 30 0 0 chr9 13044614 13045608 -111030564 + L1Md_T LINE L1 5588 6581 -1 3 684 201 94 0 0 chr9 13045673 13045705 -111030467 + (T)n Simple_repeat Simple_repeat 1 32 0 3 684 596 308 44 54 chr9 13045717 13046012 -111030160 - MER57D LTR ERV1 -119 292 1 3 684 21 36 0 0 chr9 13046523 13046551 -111029621 + AT_rich Low_complexity Low_complexity 1 28 0 4 684 406 333 34 8 chr9 13047091 13047209 -111028963 - B1_Mur1 SINE Alu -27 122 2 4 684 264 307 28 99 chr9 13047209 13047268 -111028904 - MT2B LTR ERVL -442 159 111 4 684 253 324 14 0 chr9 13047947 13048018 -111028154 + ID_B1 SINE B4 23 94 -130 4 684 3255 25 35 2 chr9 13048607 13049004 -111027168 - L1Md_F3 LINE L1 -2 6582 6173 4 684 23 0 0 0 chr9 13049659 13049682 -111026490 + AT_rich Low_complexity Low_complexity 1 23 0 4 684 487 284 39 5 chr9 13050239 13050444 -111025728 + L1MA4 LINE L1 5708 5919 -381 4 684 357 156 156 0 chr9 13051245 13051322 -111024850 - B3A SINE B2 -104 94 6 4 684 7920 76 11 4 chr9 13051369 13052508 -111023664 - Lx3_Mus LINE L1 0 5886 4741 4 684 7354 99 36 3 chr9 13052508 13052547 -111023625 + Lx3_Mus LINE L1 5872 5925 -1084 4 684 441 0 0 0 chr9 13052547 13052596 -111023576 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 684 7354 99 36 3 chr9 13052596 13053650 -111022522 + Lx3_Mus LINE L1 5926 7000 -9 4 684 755 254 26 46 chr9 13054065 13054259 -111021913 + B3A SINE B2 3 192 -6 5 684 476 297 86 21 chr9 13054341 13054527 -111021645 - B3 SINE B2 -4 212 15 5 684 240 295 41 96 chr9 13055434 13055562 -111020610 + L4 LINE RTE 1299 1417 -612 5 684 351 78 0 0 chr9 13055562 13055613 -111020559 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 5 684 240 295 41 96 chr9 13055613 13055630 -111020542 + L4 LINE RTE 1418 1436 -593 5 684 291 259 120 8 chr9 13055808 13055925 -111020247 + RMER15 LTR ERVL 446 575 0 5 684 524 250 79 26 chr9 13056932 13057084 -111019088 - B3A SINE B2 0 198 39 5 684 636 313 129 40 chr9 13057272 13057675 -111018497 - LTR40a LTR ERVL -80 439 1 5 684 284 314 0 41 chr9 13057967 13058090 -111018082 + GA-rich Low_complexity Low_complexity 4 121 0 5 684 572 363 39 6 chr9 13058376 13058556 -111017616 + B4 SINE B4 2 187 -105 5 684 407 20 0 0 chr9 13058778 13058827 -111017345 - L1_Mus1 LINE L1 -241 6326 6278 5 684 1242 121 50 0 chr9 13058828 13059026 -111017146 + L1_Mus1 LINE L1 6358 6565 -2 6 684 210 37 0 0 chr9 13060067 13060094 -111016078 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 6 684 929 222 108 105 chr9 13060101 13060473 -111015699 + ORR1D1 LTR MaLR 1 373 -1 6 684 423 0 0 0 chr9 13060526 13060573 -111015599 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 684 285 207 178 19 chr9 13061185 13061291 -111014881 - RMER20B LTR ERVK -494 133 1 6 684 1359 152 166 36 chr9 13061879 13062241 -111013931 + RLTR9E LTR ERVK 1 409 0 6 684 210 71 0 0 chr9 13062327 13062355 -111013817 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 6 684 947 139 40 40 chr9 13062359 13062561 -111013611 - Lx LINE L1 -4 6650 6449 6 684 276 310 168 0 chr9 13063411 13063524 -111012648 - RSINE1 SINE B4 -2 163 32 6 684 498 17 0 0 chr9 13064043 13064102 -111012070 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 684 662 141 107 0 chr9 13064441 13064562 -111011610 + Lx LINE L1 6091 6224 -430 7 684 616 305 35 10 chr9 13064878 13065080 -111011092 + B3 SINE B2 10 216 0 7 684 479 29 0 68 chr9 13066502 13066576 -111009596 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 684 630 287 28 22 chr9 13067378 13067556 -111008616 + B3A SINE B2 4 182 -16 7 684 2558 53 9 0 chr9 13067576 13067899 -111008273 + L1_Mus1 LINE L1 6242 6567 0 7 684 341 275 254 9 chr9 13068541 13068651 -111007521 + ID_B1 SINE B4 82 218 -6 7 684 2618 35 0 0 chr9 13068777 13069090 -111007082 + L1Md_T LINE L1 6270 6582 0 7 684 1959 150 22 22 chr9 13069370 13069732 -111006440 - IAPLTR1_Mm LTR ERVK -5 362 1 7 684 882 242 16 0 chr9 13070313 13070499 -111005673 - B3A SINE B2 -7 191 3 7 684 3007 179 117 72 chr9 13070843 13071667 -111004505 + RLTR25B LTR ERVK 2 862 -166 7 684 616 197 241 66 chr9 13071882 13071997 -111004175 + RLTR25B LTR ERVK 832 966 -137 7 684 459 0 0 0 chr9 13071997 13072048 -111004124 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 684 616 197 241 66 chr9 13072048 13072160 -111004012 + RLTR25B LTR ERVK 967 1099 -4 7 684 257 319 14 0 chr9 13072302 13072374 -111003798 + B4 SINE B4 5 77 -215 8 684 20803 164 18 84 chr9 13072661 13077724 -110998448 + L1_Mus4 LINE L1 610 5260 -623 8 684 3453 28 2 0 chr9 13077724 13078119 -110998053 - MTA_Mm LTR MaLR 0 396 1 8 684 20803 117 21 17 chr9 13078119 13079857 -110996315 + L1_Mus4 LINE L1 5261 6636 0 8 684 359 271 279 0 chr9 13079888 13080010 -110996162 + RSINE1 SINE B4 3 158 -7 8 684 8925 141 71 19 chr9 13080401 13082760 -110993412 + L1Md_F LINE L1 269 2748 -3135 8 684 593 235 173 53 chr9 13083527 13083770 -110992402 + RLTR10A LTR ERVK 140 411 0 8 684 18934 111 15 2 chr9 13085950 13089756 -110986416 + L1_Mus1 LINE L1 2742 6567 0 8 684 6789 232 3885 14 chr9 13089756 13090354 -110985818 + L1_Mus1 LINE L1 6518 7047 -3 8 684 1070 61 5 43 chr9 13090366 13090553 -110985619 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 684 1518 177 60 3 chr9 13090606 13090890 -110985282 - RLTR15 LTR ERVK -13 346 47 9 684 408 140 0 23 chr9 13090891 13090979 -110985193 - Lx3_Mus LINE L1 -8 7001 6916 9 684 26 64 0 0 chr9 13091938 13091985 -110984187 + AT_rich Low_complexity Low_complexity 1 47 0 9 684 687 12 0 0 chr9 13093157 13093237 -110982935 + (TC)n Simple_repeat Simple_repeat 1 80 0 9 684 213 39 0 0 chr9 13093273 13093299 -110982873 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 684 214 158 0 0 chr9 13093317 13093355 -110982817 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 684 535 120 0 39 chr9 13094097 13094201 -110981971 - L1Md_F2 LINE L1 0 6582 6483 9 684 1636 174 76 76 chr9 13094245 13094638 -110981534 + ORR1B1 LTR MaLR 2 394 0 9 684 290 345 10 42 chr9 13095891 13096200 -110979972 + L1M3 LINE L1 3304 3602 -2538 9 684 809 208 21 0 chr9 13097249 13097441 -110978731 + L1_Mur3 LINE L1 3610 3805 -2075 9 684 3217 245 106 53 chr9 13097475 13099657 -110976515 - MYSERV6-int LTR ERVK -830 5720 3457 9 684 5451 178 12 32 chr9 13099680 13100789 -110975383 - Lx4B LINE L1 -17 7041 5955 1 684 21 0 0 0 chr9 13101461 13101482 -110974690 + AT_rich Low_complexity Low_complexity 1 21 0 1 684 1070 112 6 0 chr9 13101639 13101808 -110974364 + (TC)n Simple_repeat Simple_repeat 1 170 0 1 684 3052 73 5 0 chr9 13102567 13102965 -110973207 - MTB LTR MaLR 0 400 1 1 684 391 281 19 10 chr9 13104984 13105088 -110971084 - MIRb SINE MIR -14 254 150 1 684 2470 68 0 33 chr9 13105745 13106082 -110970090 - IAPLTR3 LTR ERVK 0 326 1 1 684 1817 186 60 8 chr9 13106115 13106499 -110969673 - RLTR11A LTR ERVK 0 528 125 1 85 3954 132 24 10 chr9 13106502 13107290 -110968882 - Lx2 LINE L1 -1090 5907 5114 1 685 4109 124 36 7 chr9 13107288 13107972 -110968200 + Lx2 LINE L1 5936 6639 -358 1 685 1344 104 10 0 chr9 13107976 13108178 -110967994 + Lx2 LINE L1 6775 6978 -19 1 685 738 0 0 0 chr9 13108186 13108268 -110967904 + (GGAGA)n Simple_repeat Simple_repeat 2 83 0 1 685 816 180 0 0 chr9 13108268 13108396 -110967776 - RLTR11A LTR ERVK -400 128 1 1 685 402 284 63 14 chr9 13108669 13108876 -110967296 + L1MA4 LINE L1 5783 5999 -301 1 685 1520 264 54 9 chr9 13108886 13109828 -110966344 + Lx6 LINE L1 6184 7449 -11 1 685 5564 65 47 0 chr9 13109920 13110641 -110965531 - L1_Mus1 LINE L1 0 6567 5813 1 685 274 227 159 26 chr9 13110705 13110818 -110965354 + L1MA4 LINE L1 6164 6291 -6 1 685 452 303 18 0 chr9 13110840 13110949 -110965223 + B1_Mur2 SINE Alu 1 111 -38 1 685 3329 52 7 2 chr9 13110992 13111435 -110964737 + L1Md_F2 LINE L1 5142 5586 -297 1 685 7611 63 10 4 chr9 13111436 13112425 -110963747 + L1Md_F2 LINE L1 5588 6582 0 1 685 443 341 55 43 chr9 13112538 13113426 -110962746 + L1M5 LINE L1 3882 4780 -1366 1 685 248 336 25 56 chr9 13113460 13113621 -110962551 + RMER15 LTR ERVL 5 160 -415 1 685 249 308 59 37 chr9 13113738 13113873 -110962299 + RMER15 LTR ERVL 422 559 -16 1 685 23 54 0 0 chr9 13113943 13113980 -110962192 + AT_rich Low_complexity Low_complexity 1 37 0 1 685 29107 131 29 12 chr9 13114122 13117935 -110958237 + L1_Mus1 LINE L1 119 3910 -1973 1 685 2705 73 115 25 chr9 13117935 13118371 -110957801 - IAPLTR2_Mm LTR ERVK 0 475 1 1 685 29107 97 5 3 chr9 13118371 13121035 -110955137 + L1_Mus1 LINE L1 3911 6567 0 1 685 714 287 91 58 chr9 13121199 13121497 -110954675 - MTD LTR MaLR -86 314 23 1 685 1231 236 134 11 chr9 13121497 13121870 -110954302 - MTD LTR MaLR 0 419 1 1 685 467 238 141 36 chr9 13122420 13122612 -110953560 - B3 SINE B2 0 216 5 1 685 279 79 0 0 chr9 13123293 13123331 -110952841 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 685 612 27 0 0 chr9 13123381 13123455 -110952717 + (GGTTG)n Simple_repeat Simple_repeat 2 75 0 1 685 24 0 0 0 chr9 13123761 13123785 -110952387 + AT_rich Low_complexity Low_complexity 1 24 0 1 685 3194 0 0 0 chr9 13124490 13124914 -110951258 - L1Md_A LINE L1 -641 5941 5518 1 685 5847 5 0 0 chr9 13124914 13125561 -110950611 + L1Md_A LINE L1 5936 6582 0 1 685 23 0 0 0 chr9 13126147 13126170 -110950002 + AT_rich Low_complexity Low_complexity 1 23 0 1 685 751 308 30 5 chr9 13126574 13126776 -110949396 - ID_B1 SINE B4 -11 213 7 1 685 2722 99 10 5 chr9 13128683 13129089 -110947083 + L1_Mus3 LINE L1 6230 6637 -1 1 685 1439 67 0 6 chr9 13129101 13129282 -110946890 + B2_Mm2 SINE B2 2 181 -14 1 685 4869 74 76 10 chr9 13129784 13130480 -110945692 + L1Md_F2 LINE L1 5828 6569 -13 1 685 569 279 54 8 chr9 13130634 13130764 -110945408 - RSINE1 SINE B4 -27 138 3 1 685 2430 133 50 60 chr9 13132129 13132285 -110943887 + RMER6A LTR ERVK 1 153 -603 1 685 2667 68 6 6 chr9 13132285 13132641 -110943531 - L1_Mus1 LINE L1 0 6567 6212 1 685 2430 133 50 60 chr9 13132641 13132964 -110943208 + RMER6A LTR ERVK 154 475 -281 1 685 274 59 38 38 chr9 13132991 13133044 -110943128 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 1 685 631 215 98 64 chr9 13133055 13133463 -110942709 + RMER6A LTR ERVK 280 701 -55 1 685 3442 155 46 35 chr9 13133463 13134098 -110942074 + RLTR26 LTR ERVK 1 642 0 1 685 334 271 0 0 chr9 13134098 13134159 -110942013 + RMER6A LTR ERVK 696 756 0 1 685 229 320 71 10 chr9 13134327 13134425 -110941747 - B4A SINE B4 -187 105 2 1 685 286 319 59 17 chr9 13134701 13134819 -110941353 + MER94 DNA AcHobo 1 123 -11 1 685 234 192 188 25 chr9 13136021 13136101 -110940071 + MTEa LTR MaLR 277 369 -10 1 685 367 251 105 42 chr9 13136794 13136985 -110939187 + Lx8 LINE L1 7271 7473 0 1 685 38 89 0 0 chr9 13137030 13137131 -110939041 + AT_rich Low_complexity Low_complexity 1 101 0 1 685 430 88 0 0 chr9 13137156 13137224 -110938948 - L1_Mus2 LINE L1 0 6566 6499 1 685 270 236 80 80 chr9 13137254 13137429 -110938743 - Arthur1 DNA Tip100 -106 3841 3667 1 685 605 14 14 0 chr9 13137558 13137632 -110938540 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1 685 6017 70 9 85 chr9 13137633 13138413 -110937759 + L1Md_F LINE L1 335 1122 -5494 1 685 1252 41 0 0 chr9 13138413 13138560 -110937612 + B1_Mm SINE Alu 1 147 0 1 685 6017 70 9 85 chr9 13138560 13138653 -110937519 + L1Md_F LINE L1 1123 1141 -5475 1 685 3752 35 5 0 chr9 13138653 13139087 -110937085 + RLTR10C LTR ERVK 1 436 0 1 685 6017 81 5 10 chr9 13139087 13140042 -110936130 + L1Md_F LINE L1 1142 2093 -3790 1 685 27688 84 59 3 chr9 13140042 13144966 -110931206 + L1Md_F2 LINE L1 446 5586 -297 1 685 8209 46 1 0 chr9 13144966 13145961 -110930211 + L1Md_F2 LINE L1 5587 6582 0 1 685 3592 257 69 30 chr9 13146121 13147410 -110928762 + MYSERV-int LTR ERVK 3777 5116 -1434 1 685 511 317 0 62 chr9 13147422 13147617 -110928555 + RMER4A LTR ERVK 254 436 -30 1 685 613 250 17 35 chr9 13147642 13147874 -110928298 + L1VL2 LINE L1 53 280 -6055 1 685 18289 176 84 13 chr9 13147875 13148205 -110927967 + L1_Mur1 LINE L1 1388 1716 -4170 1 685 1182 68 0 0 chr9 13148205 13148352 -110927820 + B1_Mus2 SINE Alu 1 147 0 1 685 18289 176 84 13 chr9 13148352 13152133 -110924039 + L1_Mur1 LINE L1 1717 5790 -96 1 685 12758 93 12 11 chr9 13152138 13154826 -110921346 + L1Md_F LINE L1 415 3108 -2775 1 685 4950 143 70 22 chr9 13154824 13156734 -110919438 - L1Md_F LINE L1 -3837 2046 116 1 685 447 268 97 0 chr9 13156799 13156943 -110919229 + MTD LTR MaLR 155 327 -92 1 685 188 419 36 7 chr9 13157121 13157258 -110918914 - MIRc SINE MIR -125 143 3 1 685 207 139 0 0 chr9 13157929 13157965 -110918207 + (CGA)n Simple_repeat Simple_repeat 2 37 0 1 685 377 329 113 40 chr9 13158193 13158370 -110917802 + ORR1E LTR MaLR 1 190 -169 1 685 204 40 0 0 chr9 13158433 13158458 -110917714 + (TCC)n Simple_repeat Simple_repeat 3 27 0 1 685 368 281 97 24 chr9 13158458 13158582 -110917590 + ORR1E LTR MaLR 243 375 -4 1 685 513 0 0 0 chr9 13158613 13158670 -110917502 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 1 685 1109 15 0 0 chr9 13158902 13159036 -110917136 - L1Md_F2 LINE L1 -616 5966 5833 1 685 3480 49 2 0 chr9 13159032 13159481 -110916691 + L1Md_F2 LINE L1 5965 6414 -168 1 685 499 29 29 0 chr9 13159581 13159650 -110916522 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 685 207 69 0 0 chr9 13159652 13159681 -110916491 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 685 6439 122 38 8 chr9 13160115 13161152 -110915020 - Lx2 LINE L1 -2 6995 5928 1 685 2331 175 13 7 chr9 13161152 13161607 -110914565 - L1_Mur2 LINE L1 -384 5493 5036 1 685 12682 167 52 28 chr9 13161605 13161851 -110914321 - L1VL4 LINE L1 -2400 3743 3474 1 685 225 0 0 0 chr9 13161851 13161876 -110914296 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 1 685 12682 106 65 32 chr9 13161876 13163215 -110912957 - L1VL4 LINE L1 -441 3473 2133 1 685 180 0 0 0 chr9 13163215 13163235 -110912937 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 685 12682 116 36 60 chr9 13163235 13164808 -110911364 - L1VL4 LINE L1 -1782 2132 562 1 685 365 369 47 57 chr9 13164874 13165259 -110910913 + L1MC4 LINE L1 7115 7495 -547 1 685 625 224 17 8 chr9 13167309 13167426 -110908746 + RSINE1 SINE B4 3 120 -45 1 685 726 62 0 0 chr9 13167426 13167522 -110908650 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 685 315 250 6 6 chr9 13217574 13217742 -110858430 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 685 383 224 5 109 chr9 13217757 13217958 -110858214 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 685 25691 118 6 5 chr9 13218495 13224171 -110852001 - L1_Mus1 LINE L1 0 6567 871 1 685 431 218 35 0 chr9 13224953 13225040 -110851132 + B3 SINE B2 127 216 0 1 685 465 315 54 5 chr9 13225716 13225901 -110850271 - B3A SINE B2 -4 194 1 1 685 235 171 39 26 chr9 13226096 13226129 -110850043 + A-rich Low_complexity Low_complexity 3 33 0 1 685 1173 68 7 0 chr9 13226129 13226275 -110849897 + B1_Mus2 SINE Alu 1 147 0 1 685 235 171 39 26 chr9 13226275 13226319 -110849853 + A-rich Low_complexity Low_complexity 34 80 0 1 685 937 144 11 6 chr9 13226343 13226517 -110849655 + CT-rich Low_complexity Low_complexity 3 177 0 1 685 369 0 0 0 chr9 13226517 13226558 -110849614 + (TTC)n Simple_repeat Simple_repeat 3 43 0 1 685 1123 82 0 13 chr9 13226558 13226707 -110849465 - B1_Mus2 SINE Alu 0 147 1 1 685 210 71 0 0 chr9 13229416 13229444 -110846728 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 685 331 331 34 0 chr9 13230476 13230624 -110845548 - L1MC1 LINE L1 -231 6102 5950 1 685 205 294 175 0 chr9 13231051 13231177 -110844995 + L2 LINE L2 2716 2863 -556 1 685 484 324 6 17 chr9 13231536 13231709 -110844463 + L1M5 LINE L1 5554 5724 -400 1 685 233 294 19 29 chr9 13232216 13232321 -110843851 + MIR SINE MIR 127 230 -32 1 685 235 290 75 11 chr9 13233092 13233186 -110842986 - B1F2 SINE Alu -41 108 9 1 685 194 0 39 0 chr9 13233281 13233307 -110842865 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 685 307 292 171 19 chr9 13233371 13233587 -110842585 - MIRb SINE MIR -1 267 19 1 685 598 202 6 6 chr9 13234197 13234366 -110841806 + (TG)n Simple_repeat Simple_repeat 1 169 0 1 685 1901 150 105 22 chr9 13234372 13234734 -110841438 + ORR1B1 LTR MaLR 1 392 -2 1 685 256 209 23 0 chr9 13234739 13234825 -110841347 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 685 207 186 0 0 chr9 13235576 13235619 -110840553 + CT-rich Low_complexity Low_complexity 3 45 0 1 685 21 0 0 0 chr9 13235952 13235973 -110840199 + AT_rich Low_complexity Low_complexity 1 21 0 1 685 598 221 92 0 chr9 13236003 13236134 -110840038 + B1_Mm SINE Alu 5 147 0 1 685 293 111 37 0 chr9 13236134 13236188 -110839984 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1 685 266 241 0 0 chr9 13236463 13236517 -110839655 - ID4 SINE ID -22 61 8 1 685 751 257 32 11 chr9 13236571 13236756 -110839416 - ID_B1 SINE B4 -34 190 2 1 685 189 107 0 0 chr9 13237528 13237556 -110838616 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 685 216 163 0 0 chr9 13237677 13237720 -110838452 + GA-rich Low_complexity Low_complexity 1 43 0 2 686 245 167 0 36 chr9 13240051 13240107 -110836065 + A-rich Low_complexity Low_complexity 1 54 0 2 686 195 125 0 0 chr9 13240133 13240173 -110835999 + (T)n Simple_repeat Simple_repeat 1 40 0 2 686 1027 57 0 0 chr9 13240176 13240316 -110835856 - B1_Mus2 SINE Alu 0 147 8 2 686 804 236 48 24 chr9 13240378 13240586 -110835586 + B3 SINE B2 1 213 -3 2 686 3061 161 116 9 chr9 13240694 13241007 -110835165 - RMER6D LTR ERVK -12 708 367 2 686 405 0 0 0 chr9 13241007 13241052 -110835120 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 686 3061 161 116 9 chr9 13241052 13241376 -110834796 - RMER6D LTR ERVK -354 366 4 2 686 487 295 0 0 chr9 13242703 13242825 -110833347 + RSINE1 SINE B4 3 124 -41 2 686 477 0 0 0 chr9 13242932 13242985 -110833187 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 686 255 174 114 14 chr9 13245181 13245251 -110830921 + B4 SINE B4 2 78 -214 2 686 239 222 0 60 chr9 13245383 13245450 -110830722 + B3A SINE B2 122 184 -14 2 686 224 279 0 0 chr9 13245454 13245515 -110830657 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 686 330 273 30 0 chr9 13246034 13246133 -110830039 + PB1D10 SINE Alu 6 107 -10 2 686 22 0 0 0 chr9 13246249 13246271 -110829901 + AT_rich Low_complexity Low_complexity 1 22 0 2 686 614 145 0 9 chr9 13246483 13246506 -110829666 + (TATATG)n Simple_repeat Simple_repeat 1 23 0 2 686 1176 111 0 0 chr9 13246506 13246686 -110829486 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 686 614 145 0 9 chr9 13246686 13246773 -110829399 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 2 686 1125 118 4 0 chr9 13247492 13247758 -110828414 + (TG)n Simple_repeat Simple_repeat 1 267 0 2 686 364 335 66 53 chr9 13248040 13248331 -110827841 - B4 SINE B4 0 292 1 2 686 402 247 12 0 chr9 13248651 13248736 -110827436 + B1F1 SINE Alu 52 137 -12 2 686 180 0 0 0 chr9 13248736 13248756 -110827416 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 686 183 80 0 0 chr9 13249865 13249890 -110826282 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 686 574 240 82 57 chr9 13251118 13251312 -110824860 - MTEa LTR MaLR 0 379 181 2 686 288 77 0 0 chr9 13251498 13251537 -110824635 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 686 203 261 46 0 chr9 13253356 13253421 -110822751 + L2b LINE L2 3047 3114 -261 2 686 730 143 263 0 chr9 13254314 13254489 -110821683 + URR1B DNA MER1_type 5 225 0 2 686 240 226 31 41 chr9 13254489 13254586 -110821586 + (CATA)n Simple_repeat Simple_repeat 4 99 0 2 686 219 125 0 0 chr9 13254595 13254635 -110821537 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 686 920 35 9 0 chr9 13255697 13255813 -110820359 + (TTTTG)n Simple_repeat Simple_repeat 4 120 0 2 686 1024 70 0 7 chr9 13255813 13255949 -110820223 - B1_Mus1 SINE Alu -11 137 2 2 686 389 317 19 0 chr9 13256511 13256615 -110819557 + B4A SINE B4 8 113 -179 2 686 803 167 0 22 chr9 13256664 13256799 -110819373 + B1_Mus1 SINE Alu 1 132 -16 2 686 220 188 31 0 chr9 13256818 13256882 -110819290 + GA-rich Low_complexity Low_complexity 1 66 0 2 686 342 280 93 0 chr9 13257042 13257160 -110819012 - ID_B1 SINE B4 -15 209 81 2 686 212 0 0 35 chr9 13257208 13257237 -110818935 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 686 23 68 0 0 chr9 13257648 13257692 -110818480 + AT_rich Low_complexity Low_complexity 1 44 0 2 686 549 0 0 0 chr9 13258316 13258377 -110817795 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 686 282 340 19 0 chr9 13258944 13259050 -110817122 - PB1D10 SINE Alu -9 108 1 2 686 207 340 78 7 chr9 13259209 13259351 -110816821 - L2a LINE L2 -273 3153 3002 2 686 196 293 229 43 chr9 13259573 13259966 -110816206 - L2a LINE L2 -790 2629 2164 2 686 306 267 28 73 chr9 13260403 13260512 -110815660 + B4A SINE B4 36 139 -153 2 686 651 280 60 48 chr9 13262431 13262682 -110813490 + B4 SINE B4 32 285 -7 2 686 590 302 12 6 chr9 13264857 13265027 -110811145 + B3A SINE B2 27 197 -1 2 686 887 282 36 29 chr9 13265066 13265323 -110810849 + B4 SINE B4 5 270 -22 2 686 342 123 0 0 chr9 13265323 13265380 -110810792 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 686 887 282 36 29 chr9 13265380 13265396 -110810776 + B4 SINE B4 271 280 -12 2 686 355 311 19 9 chr9 13265962 13266069 -110810103 - B1F SINE Alu -33 116 9 2 686 348 24 0 0 chr9 13266490 13266531 -110809641 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 686 519 82 0 0 chr9 13266749 13266822 -110809350 + (TTCC)n Simple_repeat Simple_repeat 1 73 0 2 686 406 299 8 16 chr9 13266828 13266957 -110809215 - B1F2 SINE Alu -9 140 13 2 686 749 224 0 7 chr9 13267050 13267198 -110808974 - B1F SINE Alu -2 147 1 2 686 244 244 105 0 chr9 13267479 13267565 -110808607 - MLT1L LTR MaLR -318 292 198 2 686 609 288 83 21 chr9 13267891 13268132 -110808040 + B4 SINE B4 1 256 -36 2 686 753 240 0 0 chr9 13268301 13268447 -110807725 - RSINE1 SINE B4 -18 147 2 2 686 439 257 146 7 chr9 13270518 13270655 -110805517 + B3A SINE B2 1 156 -42 2 686 297 0 0 0 chr9 13270676 13270709 -110805463 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 686 798 144 91 0 chr9 13271149 13271281 -110804891 + B1_Mur1 SINE Alu 5 148 -1 2 686 213 276 26 26 chr9 13272079 13272157 -110804015 - L2c LINE L2 -226 3161 3084 2 686 369 0 0 0 chr9 13273502 13273543 -110802629 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 686 277 212 103 23 chr9 13273841 13273928 -110802244 - ID_B1 SINE B4 -2 222 129 2 686 267 39 77 0 chr9 13274275 13274327 -110801845 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 2 686 414 0 0 0 chr9 13275095 13275141 -110801031 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 686 256 149 21 0 chr9 13275681 13275728 -110800444 - ORR1C2 LTR MaLR -336 48 1 2 686 267 79 0 0 chr9 13275958 13275996 -110800176 + (ATG)n Simple_repeat Simple_repeat 2 39 0 2 686 1015 295 64 0 chr9 13276160 13276489 -110799683 - ORR1D2 LTR MaLR -16 354 5 2 686 205 317 0 16 chr9 13276802 13276863 -110799309 + GA-rich Low_complexity Low_complexity 4 63 0 2 686 461 309 0 0 chr9 13277071 13277220 -110798952 - B1F SINE Alu 0 149 1 2 686 236 325 0 0 chr9 13277843 13277920 -110798252 + ID4_ SINE ID 5 81 -2 2 686 224 264 161 21 chr9 13277970 13278063 -110798109 + PB1D10 SINE Alu 11 116 -1 2 686 660 245 161 42 chr9 13278448 13278708 -110797464 + B4A SINE B4 2 292 0 2 686 539 369 152 21 chr9 13278942 13279653 -110796519 - L2 LINE L2 -462 2957 2154 2 686 271 213 0 26 chr9 13280227 13280304 -110795868 + GA-rich Low_complexity Low_complexity 1 75 0 2 686 462 274 0 0 chr9 13280313 13280408 -110795764 + B1F1 SINE Alu 3 97 -52 2 686 743 245 125 127 chr9 13280701 13281070 -110795102 + MTE2a LTR MaLR 12 379 0 2 686 563 269 30 77 chr9 13281193 13281362 -110794810 + RSINE1 SINE B4 4 164 -1 2 686 566 79 0 11 chr9 13281470 13281560 -110794612 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 686 228 100 0 0 chr9 13281822 13281862 -110794310 + (A)n Simple_repeat Simple_repeat 1 40 0 2 686 288 332 50 77 chr9 13281876 13282176 -110793996 - L2 LINE L2 -1896 1523 1232 2 686 1651 292 53 12 chr9 13283329 13283839 -110792333 - Lx8 LINE L1 -167 7306 6776 2 686 798 215 20 117 chr9 13285353 13285662 -110790510 + RLTR20A2 LTR ERVK 12 287 -281 2 686 293 183 17 0 chr9 13285641 13285701 -110790471 + RLTR20A2 LTR ERVK 401 461 -107 2 686 228 223 12 24 chr9 13286851 13287026 -110789146 + (TCTG)n Simple_repeat Simple_repeat 1 172 0 2 686 183 204 0 0 chr9 13287057 13287101 -110789071 + C-rich Low_complexity Low_complexity 1 44 0 2 686 257 241 24 60 chr9 13289915 13289999 -110786173 + ID SINE ID 1 81 -143 2 686 267 306 10 20 chr9 13290093 13290193 -110785979 - RMER15 LTR ERVL -177 398 300 2 686 507 33 0 0 chr9 13290203 13290264 -110785908 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 686 405 0 0 0 chr9 13290264 13290308 -110785864 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 686 561 194 0 0 chr9 13292780 13292940 -110783232 + (TG)n Simple_repeat Simple_repeat 2 161 0 2 686 375 23 0 0 chr9 13293302 13293346 -110782826 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 686 232 209 0 69 chr9 13295221 13295293 -110780879 - MER58A DNA MER1_type -106 118 52 2 686 378 0 0 0 chr9 13295840 13295882 -110780290 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 686 982 261 23 53 chr9 13297836 13298136 -110778036 - B4A SINE B4 -1 291 1 2 686 330 291 104 21 chr9 13299146 13299290 -110776882 + RSINE1 SINE B4 4 159 -6 2 686 22 35 0 0 chr9 13299446 13299475 -110776697 + AT_rich Low_complexity Low_complexity 1 29 0 2 686 315 0 0 0 chr9 13299963 13299998 -110776174 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 686 411 21 0 0 chr9 13300952 13301000 -110775172 + (GTCTG)n Simple_repeat Simple_repeat 3 50 0 2 686 485 131 0 12 chr9 13301515 13301600 -110774572 + (GGA)n Simple_repeat Simple_repeat 2 85 0 2 686 527 247 69 62 chr9 13301961 13302121 -110774051 - B3 SINE B2 -53 163 3 2 686 260 333 43 7 chr9 13303183 13303322 -110772850 - MLT1F1 LTR MaLR -140 429 286 2 686 21 0 0 0 chr9 13304427 13304448 -110771724 + AT_rich Low_complexity Low_complexity 1 21 0 2 686 274 360 72 24 chr9 13304668 13304958 -110771214 - Zaphod DNA Tip100 -50 3981 3678 2 686 395 277 64 76 chr9 13304950 13305122 -110771050 - B3A SINE B2 -6 192 23 2 686 313 324 163 23 chr9 13305697 13305918 -110770254 - Zaphod DNA Tip100 -3455 576 325 2 686 216 185 18 53 chr9 13306747 13306804 -110769368 + B1F2 SINE Alu 3 57 -92 2 686 477 232 0 0 chr9 13306805 13307040 -110769132 + GA-rich Low_complexity Low_complexity 1 235 0 3 686 403 160 13 26 chr9 13307040 13307117 -110769055 + (CAGAGA)n Simple_repeat Simple_repeat 5 80 0 3 686 718 106 0 0 chr9 13307117 13307221 -110768951 + B1_Mus2 SINE Alu 42 145 -2 3 686 1113 247 79 63 chr9 13308441 13308493 -110767679 - MTEa LTR MaLR -3 376 325 3 686 672 13 0 0 chr9 13308493 13308570 -110767602 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 3 686 1113 247 79 63 chr9 13308570 13308884 -110767288 - MTEa LTR MaLR -55 324 4 3 686 423 0 0 0 chr9 13309120 13309167 -110767005 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 686 502 253 84 22 chr9 13309493 13309671 -110766501 + MER53 DNA hAT 3 191 -2 3 686 243 0 0 0 chr9 13310385 13310412 -110765760 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 686 432 293 40 116 chr9 13311261 13311327 -110764845 + B4A SINE B4 14 85 -207 3 686 297 0 0 0 chr9 13311327 13311360 -110764812 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 686 432 293 40 116 chr9 13311360 13311594 -110764578 + B4A SINE B4 86 290 -2 3 686 343 56 70 0 chr9 13311606 13311677 -110764495 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 686 226 306 0 0 chr9 13313105 13313177 -110762995 + CT-rich Low_complexity Low_complexity 2 73 0 3 686 927 158 0 0 chr9 13313194 13313359 -110762813 + CT-rich Low_complexity Low_complexity 3 167 0 3 686 345 47 0 0 chr9 13313351 13313394 -110762778 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 686 666 269 56 70 chr9 13313394 13313678 -110762494 - B4A SINE B4 -4 288 9 3 686 280 225 23 15 chr9 13314719 13314850 -110761322 + (TG)n Simple_repeat Simple_repeat 1 132 0 3 686 582 202 0 0 chr9 13314928 13315086 -110761086 + (TG)n Simple_repeat Simple_repeat 1 158 0 3 686 304 333 81 7 chr9 13315193 13315329 -110760843 + RSINE1 SINE B4 1 146 -19 3 686 21 36 0 0 chr9 13315626 13315654 -110760518 + AT_rich Low_complexity Low_complexity 1 28 0 3 686 572 252 58 39 chr9 13316473 13316679 -110759493 + B3 SINE B2 1 210 -6 3 686 807 11 0 0 chr9 13317085 13317177 -110758995 + (TTTCC)n Simple_repeat Simple_repeat 2 93 0 3 686 432 55 0 0 chr9 13317177 13317232 -110758940 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 686 567 195 0 0 chr9 13317479 13317602 -110758570 + (CA)n Simple_repeat Simple_repeat 2 124 0 3 686 21 0 0 0 chr9 13319656 13319677 -110756495 + AT_rich Low_complexity Low_complexity 1 21 0 3 686 21 36 0 0 chr9 13319835 13319863 -110756309 + AT_rich Low_complexity Low_complexity 1 28 0 3 686 744 171 93 0 chr9 13319875 13320004 -110756168 + B1_Mur4 SINE Alu 1 141 -9 3 686 405 323 60 40 chr9 13320272 13320472 -110755700 + B4A SINE B4 67 270 -22 3 686 249 33 0 0 chr9 13320508 13320538 -110755634 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 686 557 287 83 32 chr9 13323545 13323822 -110752350 - B4A SINE B4 0 292 2 3 686 1591 28 22 0 chr9 13324603 13324784 -110751388 - B2_Mm1t SINE B2 -7 186 2 3 686 555 234 112 46 chr9 13326055 13326252 -110749920 + B3 SINE B2 1 210 -6 3 686 189 175 0 0 chr9 13326383 13326423 -110749749 + CT-rich Low_complexity Low_complexity 1 40 0 3 686 293 155 17 0 chr9 13328569 13328627 -110747545 + CT-rich Low_complexity Low_complexity 3 61 0 3 686 235 296 73 112 chr9 13328873 13328956 -110747216 - B3A SINE B2 -25 173 2 3 686 363 276 0 12 chr9 13328956 13329052 -110747120 - B4A SINE B4 -202 90 2 3 686 342 0 0 0 chr9 13330578 13330616 -110745556 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 686 339 295 128 8 chr9 13330882 13331015 -110745157 - MLT1J LTR MaLR -311 201 53 3 686 918 106 7 0 chr9 13331161 13331302 -110744870 + B1_Mur4 SINE Alu 9 150 0 3 686 1226 34 0 0 chr9 13331448 13331594 -110744578 + B1_Mus2 SINE Alu 2 147 0 3 686 216 0 0 0 chr9 13331594 13331618 -110744554 + (A)n Simple_repeat Simple_repeat 1 24 0 3 686 1179 48 0 7 chr9 13333674 13333821 -110742351 - B1_Mus2 SINE Alu 0 147 2 3 686 906 136 0 0 chr9 13334120 13334275 -110741897 + (TCC)n Simple_repeat Simple_repeat 3 157 0 3 686 5206 68 15 1 chr9 13334277 13334954 -110741218 - L1_Mus3 LINE L1 -16 6622 5937 3 686 946 84 14 0 chr9 13335995 13336137 -110740035 + (TC)n Simple_repeat Simple_repeat 1 144 0 3 686 392 316 74 23 chr9 13336137 13336312 -110739860 - B4 SINE B4 -67 225 42 3 686 180 0 0 0 chr9 13336568 13336588 -110739584 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 686 213 139 0 65 chr9 13336673 13336719 -110739453 + G-rich Low_complexity Low_complexity 4 46 0 3 686 540 268 25 31 chr9 13336764 13336926 -110739246 + B4A SINE B4 124 284 -8 3 686 971 263 22 37 chr9 13339673 13339945 -110736227 + B4A SINE B4 2 269 -23 3 686 414 0 0 0 chr9 13339981 13340027 -110736145 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 686 22 35 0 0 chr9 13340105 13340134 -110736038 + AT_rich Low_complexity Low_complexity 1 29 0 3 686 605 259 42 0 chr9 13342189 13342332 -110733840 + RSINE1 SINE B4 4 152 -13 3 686 869 113 7 0 chr9 13342332 13342482 -110733690 + (GA)n Simple_repeat Simple_repeat 2 152 0 3 686 220 302 45 54 chr9 13343061 13343173 -110732999 + MIR SINE MIR 32 142 -120 3 686 295 304 51 17 chr9 13343498 13343615 -110732557 - MER5A1 DNA MER1_type -4 162 42 3 686 655 148 17 17 chr9 13344572 13344751 -110731421 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 686 240 59 0 0 chr9 13344769 13344803 -110731369 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 686 216 0 0 0 chr9 13344803 13344826 -110731346 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 686 1029 209 24 0 chr9 13345765 13345976 -110730196 + B3 SINE B2 1 216 0 3 686 4961 33 0 0 chr9 13346251 13346822 -110729350 - L1Md_T LINE L1 0 6582 6012 3 686 1052 114 0 29 chr9 13346823 13346836 -110729336 - B2_Mm2 SINE B2 -27 168 160 3 686 495 0 0 0 chr9 13346836 13346891 -110729281 + (TTTTA)n Simple_repeat Simple_repeat 5 59 0 3 686 1052 114 0 29 chr9 13346891 13347049 -110729123 - B2_Mm2 SINE B2 -36 159 2 3 686 264 312 161 14 chr9 13347591 13347802 -110728370 - MLT1G1 LTR MaLR -12 567 326 3 686 1138 71 24 0 chr9 13348249 13348417 -110727755 + L1Md_F2 LINE L1 6411 6582 0 3 686 254 250 31 0 chr9 13349305 13349401 -110726771 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 686 288 276 0 0 chr9 13350832 13350946 -110725226 + (TG)n Simple_repeat Simple_repeat 1 114 0 3 686 537 293 33 16 chr9 13351004 13351188 -110724984 - B4A SINE B4 -105 187 1 3 686 333 0 0 0 chr9 13351215 13351252 -110724920 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 686 712 256 58 36 chr9 13351451 13351727 -110724445 - RMER15 LTR ERVL 0 575 294 3 686 342 246 138 131 chr9 13352124 13352414 -110723758 + B4 SINE B4 1 292 0 3 686 204 135 0 0 chr9 13352734 13352771 -110723401 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 3 686 201 74 0 0 chr9 13355284 13355311 -110720861 + (A)n Simple_repeat Simple_repeat 1 27 0 3 686 405 0 0 0 chr9 13356120 13356165 -110720007 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 686 486 0 0 0 chr9 13356371 13356425 -110719747 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 686 220 191 0 0 chr9 13356427 13356474 -110719698 + (TAG)n Simple_repeat Simple_repeat 1 47 0 3 686 713 253 45 73 chr9 13356474 13356721 -110719451 - B4 SINE B4 -25 267 28 3 686 809 129 23 6 chr9 13357720 13357891 -110718281 + (TAGA)n Simple_repeat Simple_repeat 1 174 0 3 686 285 51 0 0 chr9 13357924 13357963 -110718209 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 686 461 266 25 76 chr9 13358242 13358360 -110717812 + B1F2 SINE Alu 1 112 -5 3 686 2953 64 35 18 chr9 13358367 13358762 -110717410 + L1_Mus1 LINE L1 6166 6567 0 3 686 180 179 0 0 chr9 13359023 13359062 -110717110 + GA-rich Low_complexity Low_complexity 2 40 0 3 686 3130 38 0 0 chr9 13359565 13359935 -110716237 + L1Md_F2 LINE L1 6201 6570 -12 3 686 21 57 0 0 chr9 13359993 13360028 -110716144 + AT_rich Low_complexity Low_complexity 1 35 0 3 686 249 33 0 0 chr9 13360063 13360093 -110716079 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3 686 796 167 0 0 chr9 13360462 13360600 -110715572 + B1_Mur4 SINE Alu 9 146 -4 3 686 2175 149 85 5 chr9 13360662 13361039 -110715133 + MTB_Mm LTR MaLR 1 407 0 3 686 483 294 74 14 chr9 13361568 13361716 -110714456 + RSINE1 SINE B4 3 159 -6 3 686 573 178 0 9 chr9 13364093 13364201 -110711971 + ID_B1 SINE B4 110 216 -8 3 686 367 214 96 37 chr9 13365513 13365649 -110710523 + B4 SINE B4 7 150 -142 3 686 259 263 0 50 chr9 13365597 13365677 -110710495 + PB1D9 SINE Alu 14 89 -31 3 686 236 241 0 12 chr9 13365722 13365802 -110710370 + (CATA)n Simple_repeat Simple_repeat 2 80 0 3 686 333 100 0 0 chr9 13365806 13365856 -110710316 + HAL1-3A_ME LINE L1 1975 2024 -834 3 686 697 134 7 7 chr9 13366982 13367132 -110709040 + (TG)n Simple_repeat Simple_repeat 1 150 0 3 686 193 325 35 11 chr9 13367823 13367910 -110708262 - MIRb SINE MIR -81 187 99 3 686 665 243 320 11 chr9 13368841 13369048 -110707124 + B4A SINE B4 4 274 -18 3 686 216 67 0 0 chr9 13369075 13369105 -110707067 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 687 269 314 0 34 chr9 13370163 13370252 -110705920 + MER5A DNA MER1_type 49 134 -55 3 687 226 393 8 0 chr9 13370381 13370498 -110705674 - MIR SINE MIR -34 228 111 3 687 360 0 0 0 chr9 13370617 13370657 -110705515 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 687 197 54 0 75 chr9 13370909 13370949 -110705223 + (A)n Simple_repeat Simple_repeat 1 37 0 3 687 201 154 0 0 chr9 13371203 13371242 -110704930 + (CAGG)n Simple_repeat Simple_repeat 3 41 0 3 687 1115 52 7 0 chr9 13371351 13371487 -110704685 + B1_Mus1 SINE Alu 1 137 -11 3 687 243 0 0 0 chr9 13371487 13371514 -110704658 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 687 397 275 62 51 chr9 13371710 13371986 -110704186 + RMER10A LTR ERVL 20 298 -144 4 687 495 87 65 0 chr9 13371986 13372078 -110704094 + CT-rich Low_complexity Low_complexity 5 102 0 4 687 313 211 109 22 chr9 13372175 13372267 -110703905 + RMER10A LTR ERVL 318 417 -25 4 687 287 249 106 3 chr9 13372293 13372403 -110703769 - B1_Mur4 SINE Alu -21 129 1 4 687 457 359 118 18 chr9 13373279 13373662 -110702510 - MTEb-int LTR MaLR -337 1243 823 4 687 200 34 0 33 chr9 13373783 13373813 -110702359 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 4 687 683 197 71 0 chr9 13373813 13373940 -110702232 - B1_Mur2 SINE Alu -12 137 2 4 687 659 350 37 30 chr9 13374030 13374493 -110701679 - MTEb-int LTR MaLR -1113 467 2 4 687 288 247 30 20 chr9 13374494 13374593 -110701579 - MTEb LTR MaLR -2 377 278 4 687 228 67 0 0 chr9 13375413 13375443 -110700729 + (GTATG)n Simple_repeat Simple_repeat 4 33 0 4 687 288 77 0 0 chr9 13376256 13376295 -110699877 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 687 705 224 25 40 chr9 13377406 13377606 -110698566 + B3A SINE B2 2 198 0 4 687 283 279 35 0 chr9 13378089 13378175 -110697997 - PB1D10 SINE Alu -2 115 27 4 687 261 293 36 24 chr9 13378430 13378514 -110697658 - MIRc SINE MIR -173 95 11 4 687 222 208 0 20 chr9 13379203 13379252 -110696920 - PB1D7 SINE Alu 0 120 73 4 687 1187 223 68 76 chr9 13379368 13379722 -110696450 - ORR1E LTR MaLR -4 355 5 4 687 207 186 0 0 chr9 13381111 13381154 -110695018 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 687 822 255 157 16 chr9 13381174 13381429 -110694743 - B4A SINE B4 0 292 2 4 687 1072 230 0 14 chr9 13382663 13382875 -110693297 + B3 SINE B2 1 209 -7 4 687 698 227 148 161 chr9 13382920 13383304 -110692868 + MTE2a LTR MaLR 1 379 0 4 687 199 239 27 27 chr9 13383340 13383413 -110692759 + L2c LINE L2 3123 3195 -192 4 687 1050 104 0 0 chr9 13383771 13383925 -110692247 + (GAA)n Simple_repeat Simple_repeat 2 155 0 4 687 735 12 0 0 chr9 13383926 13384010 -110692162 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 4 687 749 182 16 0 chr9 13384257 13384383 -110691789 + B3A SINE B2 5 132 -66 4 687 1062 0 0 0 chr9 13385095 13385213 -110690959 + (CTTTG)n Simple_repeat Simple_repeat 2 119 0 4 687 1143 163 62 0 chr9 13385392 13385601 -110690571 - URR1A DNA MER1_type 0 226 5 4 687 323 349 32 32 chr9 13385657 13385811 -110690361 + MTD LTR MaLR 117 270 -149 4 687 306 89 22 0 chr9 13385811 13385856 -110690316 - MERVL_2A-int LTR ERVL -1156 4605 4560 4 687 273 280 110 18 chr9 13385867 13385976 -110690196 + MTD LTR MaLR 256 374 -5 4 687 601 285 63 6 chr9 13386311 13386470 -110689702 + B3 SINE B2 2 169 -47 4 687 536 73 0 12 chr9 13386470 13386553 -110689619 + (TAAA)n Simple_repeat Simple_repeat 4 85 0 4 687 699 247 38 21 chr9 13387507 13387693 -110688479 - B3 SINE B2 -25 191 3 4 687 288 153 184 16 chr9 13389634 13389718 -110686454 + B1_Mus2 SINE Alu 59 149 0 4 687 624 295 25 20 chr9 13389807 13390011 -110686161 + ID_B1 SINE B4 19 223 -1 4 687 377 321 24 12 chr9 13391447 13391611 -110684561 + MER5A1 DNA MER1_type 1 166 0 4 687 218 74 74 0 chr9 13392366 13392420 -110683752 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 4 687 210 157 39 19 chr9 13393063 13393115 -110683057 + L2c LINE L2 3283 3335 -52 4 687 635 297 0 46 chr9 13393303 13393497 -110682675 + B3A SINE B2 3 187 -11 4 687 596 259 77 81 chr9 13393583 13393818 -110682354 - MER2 DNA MER2_type -26 319 86 4 687 650 267 19 31 chr9 13393848 13394061 -110682111 - B3 SINE B2 0 195 3 4 687 700 194 30 0 chr9 13394098 13394232 -110681940 - B1_Mur3 SINE Alu -11 138 1 4 687 848 39 3 50 chr9 13394263 13394403 -110681769 - B1_Mus1 SINE Alu -1 148 13 4 687 533 277 7 26 chr9 13394492 13394644 -110681528 - B1F SINE Alu 0 149 1 4 687 218 264 0 0 chr9 13396169 13396234 -110679938 - MIRb SINE MIR -84 184 120 4 687 326 283 9 28 chr9 13399788 13399897 -110676275 + PB1D10 SINE Alu 1 107 -10 4 687 286 319 66 24 chr9 13399997 13400164 -110676008 - MLT1D LTR MaLR -80 425 252 4 687 319 298 44 0 chr9 13400495 13400609 -110675563 + B3 SINE B2 97 215 -1 4 687 557 282 33 62 chr9 13403532 13403774 -110672398 + Lx8 LINE L1 7163 7397 -76 4 687 884 253 117 4 chr9 13404849 13405115 -110671057 + MTE2b LTR MaLR 3 298 -81 4 687 386 278 94 50 chr9 13405485 13405845 -110670327 + MTC LTR MaLR 1 379 -42 4 687 23 33 0 0 chr9 13407087 13407117 -110669055 + AT_rich Low_complexity Low_complexity 1 30 0 4 687 402 21 0 0 chr9 13408288 13408335 -110667837 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 687 538 297 213 0 chr9 13408361 13408600 -110667572 - B4 SINE B4 -2 290 1 4 687 203 147 0 0 chr9 13409115 13409149 -110667023 + (G)n Simple_repeat Simple_repeat 1 34 0 4 687 335 224 29 39 chr9 13409173 13409275 -110666897 - MLT1A1 LTR MaLR -8 400 300 4 687 3359 38 5 0 chr9 13409452 13409844 -110666328 - MTA_Mm LTR MaLR -2 394 1 4 687 806 313 155 11 chr9 13409931 13410364 -110665808 - MER21B LTR ERV1 -168 695 201 4 687 188 348 27 82 chr9 13410481 13410628 -110665544 - MIR SINE MIR -109 153 15 4 687 207 0 0 0 chr9 13410864 13410887 -110665285 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 687 207 0 0 0 chr9 13410894 13410917 -110665255 + (T)n Simple_repeat Simple_repeat 1 23 0 4 687 535 275 49 12 chr9 13410923 13411085 -110665087 - B4A SINE B4 -123 169 2 4 687 922 169 157 4 chr9 13413203 13413485 -110662687 - ORR1C2 LTR MaLR 0 384 3 4 687 216 301 10 51 chr9 13414301 13414399 -110661773 + GA-rich Low_complexity Low_complexity 4 97 0 4 687 755 78 261 0 chr9 13414891 13415006 -110661166 + B1_Mm SINE Alu 1 145 -2 4 687 303 145 0 0 chr9 13415010 13415061 -110661111 + (A)n Simple_repeat Simple_repeat 1 51 0 4 687 1053 150 0 0 chr9 13415061 13415241 -110660931 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 687 303 145 0 0 chr9 13415241 13415251 -110660921 + (A)n Simple_repeat Simple_repeat 1 10 0 4 687 2314 73 0 0 chr9 13415251 13415539 -110660633 - L1_Mus2 LINE L1 -246 6320 6033 4 687 1628 105 13 0 chr9 13415556 13415794 -110660378 + L1_Mus3 LINE L1 6394 6634 -4 4 687 37 0 0 0 chr9 13416025 13416062 -110660110 + AT_rich Low_complexity Low_complexity 1 37 0 4 687 234 207 0 0 chr9 13416632 13416690 -110659482 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 687 621 66 0 0 chr9 13417738 13417829 -110658343 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 687 306 119 59 9 chr9 13418914 13418988 -110657184 - PB1D10 SINE Alu -51 99 17 4 687 254 213 33 0 chr9 13418944 13419005 -110657167 - B4A SINE B4 -147 145 83 4 687 1107 272 72 19 chr9 13419117 13419436 -110656736 - MTE2b LTR MaLR -43 336 1 4 687 408 20 0 0 chr9 13420172 13420221 -110655951 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 687 477 0 0 0 chr9 13420221 13420274 -110655898 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 687 525 151 0 0 chr9 13420276 13420395 -110655777 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 687 1637 164 86 33 chr9 13422726 13422895 -110653277 + ORR1C2 LTR MaLR 6 173 -211 4 687 924 88 0 0 chr9 13422895 13423031 -110653141 + (TC)n Simple_repeat Simple_repeat 1 136 0 4 687 1637 164 86 33 chr9 13423031 13423221 -110652951 + ORR1C2 LTR MaLR 174 383 -1 4 687 659 309 52 28 chr9 13423842 13424055 -110652117 + ID_B1 SINE B4 7 224 0 4 687 902 265 5 0 chr9 13424108 13424323 -110651849 + B3 SINE B2 1 216 0 4 687 267 31 0 0 chr9 13425266 13425298 -110650874 + (CAG)n Simple_repeat Simple_repeat 3 34 0 4 687 885 121 0 35 chr9 13425690 13425862 -110650310 + (CAG)n Simple_repeat Simple_repeat 1 166 0 4 687 427 96 0 67 chr9 13425888 13425977 -110650195 + (CAG)n Simple_repeat Simple_repeat 1 83 0 4 687 486 0 0 0 chr9 13427102 13427156 -110649016 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 687 195 331 121 0 chr9 13427836 13427960 -110648212 - MIR SINE MIR -112 150 12 4 687 223 204 74 0 chr9 13429802 13429856 -110646316 - L2a LINE L2 0 3426 3369 4 687 550 205 0 0 chr9 13429892 13430014 -110646158 + B1_Mus1 SINE Alu 6 127 -21 4 687 234 0 0 0 chr9 13430099 13430125 -110646047 + (T)n Simple_repeat Simple_repeat 1 26 0 4 687 227 79 26 0 chr9 13430211 13430249 -110645923 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 687 531 264 253 17 chr9 13430269 13430499 -110645673 - B4 SINE B4 0 292 9 4 687 208 121 0 0 chr9 13431472 13431505 -110644667 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 687 228 228 0 0 chr9 13431753 13431810 -110644362 + GA-rich Low_complexity Low_complexity 2 58 0 4 687 223 265 0 0 chr9 13433055 13433119 -110643053 + L2c LINE L2 3228 3317 -70 4 687 470 282 13 63 chr9 13434953 13435112 -110641060 + B3A SINE B2 2 152 -46 4 687 356 139 13 0 chr9 13435113 13435192 -110640980 + CT-rich Low_complexity Low_complexity 1 80 0 4 687 808 157 22 0 chr9 13435232 13435366 -110640806 + B1_Mus2 SINE Alu 5 141 -6 4 687 462 36 0 0 chr9 13435367 13435423 -110640749 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 4 687 276 273 0 0 chr9 13435895 13436005 -110640167 + (TG)n Simple_repeat Simple_repeat 1 110 0 4 687 210 37 0 0 chr9 13436736 13436763 -110639409 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 4 687 545 124 133 0 chr9 13436768 13436873 -110639299 - B1_Mus2 SINE Alu -8 139 21 4 687 724 50 20 0 chr9 13438221 13438322 -110637850 + (TC)n Simple_repeat Simple_repeat 1 103 0 4 687 534 124 0 0 chr9 13438392 13438481 -110637691 + (CA)n Simple_repeat Simple_repeat 1 89 0 4 687 197 260 0 0 chr9 13438982 13439032 -110637140 + L2b LINE L2 3099 3148 -227 5 687 181 316 38 38 chr9 13439166 13439245 -110636927 - L2c LINE L2 -9 3378 3300 5 687 23 54 0 0 chr9 13439565 13439602 -110636570 + AT_rich Low_complexity Low_complexity 1 37 0 5 687 326 247 106 7 chr9 13440002 13440102 -110636070 + B1F1 SINE Alu 1 105 -44 5 687 270 218 0 0 chr9 13440118 13440173 -110635999 + B3 SINE B2 1 55 -161 5 687 231 36 0 0 chr9 13443777 13443805 -110632367 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 687 23 33 0 0 chr9 13443893 13443923 -110632249 + AT_rich Low_complexity Low_complexity 1 30 0 5 687 209 77 51 0 chr9 13445043 13445082 -110631090 + (TCTCTG)n Simple_repeat Simple_repeat 4 44 0 5 687 255 61 0 0 chr9 13445088 13445121 -110631051 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 687 187 269 71 36 chr9 13445261 13445373 -110630799 + L2a LINE L2 3194 3309 -117 5 687 382 342 109 0 chr9 13446284 13446486 -110629686 + MIRb SINE MIR 37 260 -8 5 687 259 319 28 0 chr9 13446861 13446933 -110629239 + B4A SINE B4 1 74 -218 5 687 220 288 53 60 chr9 13447307 13447440 -110628732 - MIR SINE MIR -27 235 104 5 687 207 0 0 0 chr9 13448127 13448150 -110628022 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 687 1045 116 0 7 chr9 13448163 13448311 -110627861 - B1_Mus1 SINE Alu -1 147 1 5 687 646 299 73 62 chr9 13451244 13451533 -110624639 + B4A SINE B4 1 292 0 5 687 234 0 0 0 chr9 13451907 13451933 -110624239 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 687 2030 110 10 0 chr9 13454381 13454682 -110621490 - L1_Mus4 LINE L1 0 6636 6333 5 687 761 194 131 0 chr9 13455109 13455284 -110620888 + ID_B1 SINE B4 24 221 -3 5 687 1200 48 7 7 chr9 13456034 13456181 -110619991 + B1_Mm SINE Alu 1 147 0 5 687 218 313 40 20 chr9 13456533 13456634 -110619538 - MIR3 SINE MIR -28 180 78 5 687 391 302 78 23 chr9 13458351 13458377 -110617795 + B4A SINE B4 63 95 -197 5 687 247 302 97 40 chr9 13458377 13458501 -110617671 + B1_Mur1 SINE Alu 1 131 -18 5 687 234 0 0 0 chr9 13458505 13458531 -110617641 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 687 270 0 0 0 chr9 13459177 13459207 -110616965 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 687 735 294 16 137 chr9 13460571 13460937 -110615235 + MTE2a LTR MaLR 58 379 0 5 687 450 0 0 0 chr9 13460987 13461037 -110615135 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 687 198 246 52 17 chr9 13461584 13461642 -110614530 + MIRb SINE MIR 165 224 -44 5 687 228 247 0 0 chr9 13461805 13461890 -110614282 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 5 687 374 357 21 0 chr9 13462053 13462193 -110613979 + LTR87 LTR ERVL? 1 143 -481 5 687 705 299 88 21 chr9 13462210 13462538 -110613634 + LTR87 LTR ERVL? 222 571 -53 5 687 1168 123 106 19 chr9 13462830 13463037 -110613135 - URR1A DNA MER1_type 0 226 2 5 687 308 191 278 11 chr9 13463554 13463644 -110612528 - PB1D7 SINE Alu 0 120 7 5 687 255 122 0 0 chr9 13463871 13463920 -110612252 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 687 499 275 92 26 chr9 13465091 13465244 -110610928 + RSINE1 SINE B4 3 165 0 5 687 180 77 0 0 chr9 13466372 13466398 -110609774 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 5 687 270 0 0 0 chr9 13466606 13466636 -110609536 + (T)n Simple_repeat Simple_repeat 1 30 0 5 687 180 0 0 0 chr9 13467711 13467731 -110608441 + (C)n Simple_repeat Simple_repeat 1 20 0 5 687 270 361 0 0 chr9 13469523 13469620 -110606552 - RSINE1 SINE B4 -1 164 68 5 687 287 308 16 57 chr9 13469668 13469792 -110606380 - B4 SINE B4 -173 119 1 5 687 311 181 83 0 chr9 13470200 13470272 -110605900 + B4A SINE B4 2 79 -213 5 687 397 284 34 0 chr9 13470282 13470430 -110605742 - B4 SINE B4 -139 153 1 5 687 238 386 0 0 chr9 13470560 13470661 -110605511 - L2b LINE L2 -1 3374 3274 5 687 796 260 82 92 chr9 13470763 13471250 -110604922 + RLTR12B LTR ERVK 18 499 -29 5 687 27 0 0 0 chr9 13471501 13471528 -110604644 + AT_rich Low_complexity Low_complexity 1 27 0 5 687 1092 96 0 0 chr9 13473009 13473143 -110603029 + B1_Mus1 SINE Alu 2 135 -13 5 687 278 26 26 0 chr9 13473143 13473182 -110602990 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 687 1092 96 0 0 chr9 13473182 13473193 -110602979 + B1_Mus1 SINE Alu 136 146 -2 5 687 548 101 45 0 chr9 13474446 13474535 -110601637 - RLTR1B LTR ERV1 0 512 420 5 687 1145 76 0 0 chr9 13474608 13474753 -110601419 - B1_Mm SINE Alu 0 147 3 5 687 266 357 0 0 chr9 13475097 13475181 -110600991 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 687 1476 63 11 0 chr9 13476670 13476860 -110599312 - B2_Mm1t SINE B2 0 193 2 5 687 285 29 0 0 chr9 13477645 13477679 -110598493 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 687 311 215 0 14 chr9 13477807 13477887 -110598285 - B1F SINE Alu -26 123 48 5 687 226 348 96 22 chr9 13479043 13479178 -110596994 - L2a LINE L2 0 3426 3282 5 687 1245 35 0 0 chr9 13479733 13479877 -110596295 + B1_Mm SINE Alu 4 147 0 5 687 225 0 0 0 chr9 13479877 13479902 -110596270 + (A)n Simple_repeat Simple_repeat 1 25 0 5 687 472 248 145 89 chr9 13479911 13480146 -110596026 - MTE2b LTR MaLR -131 248 1 5 687 255 249 83 50 chr9 13480863 13481025 -110595147 - MIRc SINE MIR -82 194 14 5 687 383 182 0 0 chr9 13481534 13481600 -110594572 + ID4 SINE ID 15 80 -3 5 687 240 301 79 24 chr9 13481763 13481889 -110594283 + MER5A1 DNA MER1_type 30 162 -4 5 687 313 300 11 0 chr9 13482472 13482562 -110593610 - RSINE1 SINE B4 -74 91 1 5 687 1386 123 18 14 chr9 13483066 13483288 -110592884 + RMER4B LTR ERVK 362 584 -1 5 687 181 339 63 16 chr9 13483395 13483458 -110592714 - MIR SINE MIR -58 150 85 5 687 1310 255 48 0 chr9 13483991 13484348 -110591824 - MTEb LTR MaLR -5 374 1 5 687 948 120 0 0 chr9 13484593 13484743 -110591429 + (TTGG)n Simple_repeat Simple_repeat 2 151 0 5 687 988 269 131 0 chr9 13484947 13485252 -110590920 - Lx8 LINE L1 -7 7466 7122 5 687 210 143 0 0 chr9 13487055 13487090 -110589082 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 5 687 766 31 0 0 chr9 13489714 13489810 -110586362 + B1_Mm SINE Alu 48 143 -4 5 687 324 0 0 0 chr9 13489811 13489847 -110586325 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 687 324 0 0 0 chr9 13490989 13491025 -110585147 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 687 609 269 14 0 chr9 13491320 13491461 -110584711 + ID_B1 SINE B4 82 224 0 5 687 440 280 211 0 chr9 13491500 13491675 -110584497 + B3 SINE B2 1 212 -4 5 687 450 94 0 0 chr9 13491691 13491755 -110584417 + (CACG)n Simple_repeat Simple_repeat 2 65 0 5 687 281 225 42 14 chr9 13493063 13493135 -110583037 + ORR1E LTR MaLR 1 74 -285 5 687 252 0 0 0 chr9 13493827 13493855 -110582317 + (CCCCG)n Simple_repeat Simple_repeat 2 29 0 5 687 801 227 22 3 chr9 13493945 13494136 -110582036 - B3A SINE B2 -20 196 9 5 687 410 296 123 6 chr9 13494497 13494660 -110581512 - MER58A DNA MER1_type -13 211 30 5 687 1140 191 143 20 chr9 13495744 13495870 -110580302 + Lx9 LINE L1 7297 7423 -221 5 687 3453 45 0 0 chr9 13495870 13496266 -110579906 - MTA_Mm LTR MaLR 0 396 1 5 687 7930 62 56 3 chr9 13496266 13497309 -110578863 - MTA_Mm-int LTR MaLR 0 1098 1 5 687 3442 38 0 2 chr9 13497309 13497706 -110578466 - MTA_Mm LTR MaLR 0 396 1 5 687 1140 191 143 20 chr9 13497706 13497877 -110578295 + Lx9 LINE L1 7424 7631 -13 5 687 354 45 0 0 chr9 13497903 13497947 -110578225 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 687 444 275 74 42 chr9 13499022 13499238 -110576934 - Lx8 LINE L1 -1 7472 7250 5 687 281 315 150 34 chr9 13500040 13500247 -110575925 + MIRb SINE MIR 1 231 -37 1 688 687 246 0 0 chr9 13500678 13500816 -110575356 - ID_B1 SINE B4 -1 223 86 2 688 263 309 29 121 chr9 13500703 13500909 -110575263 - MT2B LTR ERVL -325 276 90 3 688 1257 57 4 0 chr9 13502808 13503053 -110573119 + (CA)n Simple_repeat Simple_repeat 1 246 0 4 688 231 218 35 35 chr9 13504243 13504300 -110571872 - L2b LINE L2 -2 3373 3317 5 688 201 167 28 0 chr9 13504272 13504308 -110571864 - MIRb SINE MIR -27 241 205 6 688 802 202 105 9 chr9 13504896 13505106 -110571066 + MER121 Unknown Unknown 63 292 -120 7 688 351 301 98 44 chr9 13505405 13505662 -110570510 + MER90a LTR ERV1 1 310 -304 8 688 211 183 0 200 chr9 13505943 13506018 -110570154 + MIRm SINE MIR 58 117 -159 9 688 232 176 89 63 chr9 13505988 13506067 -110570105 + MIRb SINE MIR 88 168 -100 1 688 470 252 70 49 chr9 13506934 13506950 -110569222 + ID_B1 SINE B4 67 211 -13 1 688 631 230 56 0 chr9 13506950 13507076 -110569096 + B1F1 SINE Alu 4 136 -13 1 688 253 215 136 107 chr9 13507502 13507679 -110568493 - MLT1J LTR MaLR -115 397 216 1 688 702 273 12 24 chr9 13508181 13508346 -110567826 + RSINE1 SINE B4 3 165 0 1 688 201 250 157 20 chr9 13508917 13509019 -110567153 - L2a LINE L2 0 3426 3311 1 688 216 0 0 0 chr9 13511696 13511720 -110564452 + (T)n Simple_repeat Simple_repeat 1 24 0 1 688 221 100 50 0 chr9 13511945 13511985 -110564187 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 1 688 227 204 0 39 chr9 13513593 13513644 -110562528 + CT-rich Low_complexity Low_complexity 3 51 0 1 688 597 218 99 68 chr9 13513961 13514153 -110562019 - B3A SINE B2 0 198 1 1 688 348 220 0 0 chr9 13514267 13514273 -110561899 + (CA)n Simple_repeat Simple_repeat 2 7 0 2 688 587 286 180 20 chr9 13514273 13514523 -110561649 + B4 SINE B4 3 292 0 2 688 348 220 0 0 chr9 13514523 13514616 -110561556 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 688 1315 34 0 0 chr9 13515353 13515499 -110560673 + B1_Mus2 SINE Alu 2 147 0 2 688 234 0 0 0 chr9 13515499 13515525 -110560647 + (A)n Simple_repeat Simple_repeat 1 26 0 2 688 685 311 38 24 chr9 13516265 13516476 -110559696 - ID_B1 SINE B4 -8 216 3 2 688 414 83 67 0 chr9 13516938 13516998 -110559174 - B1_Mm SINE Alu -15 132 69 2 688 534 283 50 14 chr9 13518493 13518633 -110557539 - B4A SINE B4 -65 227 83 2 688 1258 67 0 22 chr9 13518713 13518897 -110557275 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 688 473 32 16 0 chr9 13518925 13518988 -110557184 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 688 476 226 21 0 chr9 13518991 13519084 -110557088 - PB1D9 SINE Alu -13 107 13 3 688 206 295 40 40 chr9 13519565 13519664 -110556508 + GA-rich Low_complexity Low_complexity 2 100 0 3 688 450 53 0 0 chr9 13519666 13519723 -110556449 + (GGGA)n Simple_repeat Simple_repeat 3 59 0 3 688 4462 94 17 20 chr9 13520087 13520683 -110555489 + Lx LINE L1 6056 6649 -5 3 688 456 19 0 0 chr9 13520690 13520743 -110555429 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 3 688 249 365 88 63 chr9 13521091 13521375 -110554797 + LTR16A1 LTR ERVL 31 321 -135 3 688 222 235 0 38 chr9 13521477 13521530 -110554642 + ID4_ SINE ID 14 64 -19 3 688 1893 155 37 3 chr9 13521573 13521897 -110554275 + RMER20A LTR ERVK 1 335 -181 3 688 20642 155 34 89 chr9 13521907 13525167 -110551005 - Lx LINE L1 0 6654 3334 3 688 1235 68 7 0 chr9 13525167 13525313 -110550859 - B1_Mus2 SINE Alu 0 147 1 3 688 20642 178 14 126 chr9 13525313 13526078 -110550094 - Lx LINE L1 -2544 3333 2588 3 688 948 96 7 0 chr9 13526078 13526213 -110549959 - L1Md_F2 LINE L1 -4 6578 6443 4 688 20642 171 25 87 chr9 13526213 13528854 -110547318 - Lx LINE L1 -3290 2587 453 3 688 399 270 72 26 chr9 13528827 13528979 -110547193 - Lx LINE L1 -5844 790 632 3 688 5561 16 0 0 chr9 13528982 13529611 -110546561 + L1Md_T LINE L1 4958 5586 -297 4 688 9035 33 0 0 chr9 13529611 13530607 -110545565 + L1Md_T LINE L1 5587 6582 0 4 688 1094 261 39 7 chr9 13530611 13530893 -110545279 - Lx LINE L1 -5994 640 350 3 688 413 252 0 64 chr9 13530893 13531003 -110545169 + B4A SINE B4 190 292 0 4 688 1092 183 128 85 chr9 13531108 13531461 -110544711 + RLTR9A LTR ERVK 1 368 0 4 688 381 261 149 126 chr9 13532049 13532264 -110543908 + MTEa LTR MaLR 151 370 -9 4 688 235 179 44 15 chr9 13532301 13532369 -110543803 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 688 31850 120 25 24 chr9 13532532 13538859 -110537313 - L1_Mus2 LINE L1 0 6566 247 4 688 1162 89 7 0 chr9 13538901 13539047 -110537125 - B1_Mus2 SINE Alu 0 147 1 4 688 1146 194 25 0 chr9 13540566 13540762 -110535410 - B3 SINE B2 -15 201 1 4 688 23 54 0 0 chr9 13540805 13540842 -110535330 + AT_rich Low_complexity Low_complexity 1 37 0 4 688 351 325 85 15 chr9 13541871 13542056 -110534116 + B4A SINE B4 95 288 -4 5 688 561 30 0 0 chr9 13543682 13543749 -110532423 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 688 228 67 0 0 chr9 13543749 13543779 -110532393 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 688 296 304 173 44 chr9 13544233 13544481 -110531691 + B4 SINE B4 4 283 -9 5 688 408 223 0 0 chr9 13545697 13545800 -110530372 + (TAGG)n Simple_repeat Simple_repeat 1 103 0 5 688 454 296 31 129 chr9 13545806 13546000 -110530172 - ID_B1 SINE B4 -16 208 34 5 688 480 273 179 9 chr9 13546639 13546857 -110529315 - L1MEf LINE L1 -5388 812 558 5 688 780 272 52 56 chr9 13547114 13547276 -110528896 + ORR1E LTR MaLR 92 241 -118 5 688 2988 149 63 67 chr9 13547276 13547845 -110528327 + RMER2 LTR ERV1 1 567 0 5 688 780 272 52 56 chr9 13547845 13547951 -110528221 + ORR1E LTR MaLR 242 359 0 5 688 431 196 268 0 chr9 13547965 13548144 -110528028 - Tigger7 DNA MER2_type -133 2358 2132 5 688 326 336 90 0 chr9 13548235 13548357 -110527815 - Tigger7 DNA MER2_type -2325 166 34 5 688 3298 29 96 0 chr9 13548392 13548767 -110527405 + IAPLTR2a LTR ERVK 1 411 0 6 688 331 238 94 13 chr9 13549073 13549222 -110526950 + Charlie10 DNA MER1_type 2661 2821 -1 6 688 449 364 23 0 chr9 13549402 13549575 -110526597 - B4A SINE B4 -10 282 106 6 688 527 237 8 8 chr9 13549778 13549897 -110526275 - MTD LTR MaLR 0 421 303 6 688 308 83 0 20 chr9 13549961 13550010 -110526162 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 6 688 1293 162 119 4 chr9 13550012 13550272 -110525900 - RMER1A Other Other -12 1018 729 6 688 2148 86 28 42 chr9 13550272 13550730 -110525442 - RMER2 LTR ERV1 -13 554 1 6 688 568 196 98 0 chr9 13550730 13550842 -110525330 - RMER1A Other Other -300 730 608 6 688 894 280 51 12 chr9 13550842 13550886 -110525286 - MTD LTR MaLR -154 267 221 6 688 1447 49 60 11 chr9 13550886 13551070 -110525102 - B2_Mm2 SINE B2 0 195 3 6 688 1101 218 16 0 chr9 13551070 13551282 -110524890 - MTD LTR MaLR -201 220 1 6 688 407 302 30 30 chr9 13551282 13551413 -110524759 - B4 SINE B4 -60 232 102 6 688 389 82 0 32 chr9 13551422 13551485 -110524687 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 6 688 281 218 61 49 chr9 13551485 13551567 -110524605 - RSINE1 SINE B4 -69 96 14 7 688 714 222 133 0 chr9 13554797 13554977 -110521195 - B3 SINE B2 -11 205 2 7 688 752 168 15 40 chr9 13556692 13556846 -110519326 - B1_Mur3 SINE Alu 0 149 9 7 688 1289 107 0 6 chr9 13557469 13557647 -110518525 + B2_Mm2 SINE B2 1 177 -18 7 688 261 98 0 0 chr9 13558083 13558124 -110518048 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 688 3250 47 3 0 chr9 13558679 13559063 -110517109 - IAPEY_LTR LTR ERVK 0 385 1 7 688 20793 45 3 6 chr9 13559067 13561783 -110514389 - IAPEy-int LTR ERVK -4 7509 4801 7 688 2725 131 10 23 chr9 13561781 13562461 -110513711 - IAPEy-int LTR ERVK -6454 1059 1 7 688 3258 47 3 0 chr9 13562461 13562845 -110513327 - IAPEY_LTR LTR ERVK 0 385 1 7 688 220 246 16 16 chr9 13563480 13563542 -110512630 + (TATG)n Simple_repeat Simple_repeat 1 62 0 7 688 295 338 82 22 chr9 13563548 13563817 -110512355 - B4 SINE B4 -6 286 2 7 688 231 335 51 46 chr9 13565367 13565564 -110510608 + YREP_Mm Unknown Unknown 98 295 -1517 7 688 674 277 53 11 chr9 13565452 13565642 -110510530 - ID_B1 SINE B4 -4 220 23 7 688 214 333 15 31 chr9 13565584 13565649 -110510523 - ID4 SINE ID -5 78 15 8 688 1197 222 38 19 chr9 13567329 13567595 -110508577 + MTE2b LTR MaLR 1 271 -108 8 688 838 233 13 0 chr9 13567594 13567753 -110508419 + MTE2b LTR MaLR 219 379 0 8 688 2730 205 10 16 chr9 13567859 13568484 -110507688 + RMER3D-int LTR ERVK 2201 2821 -21 8 688 195 69 0 0 chr9 13568485 13568514 -110507658 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 8 688 2352 191 38 20 chr9 13568546 13569075 -110507097 + RLTR31_Mur LTR ERVK 50 552 -1 8 688 401 114 200 0 chr9 13569076 13569146 -110507026 - RLTR20C LTR ERVK -450 84 1 8 688 957 235 37 0 chr9 13569183 13569370 -110506802 + B3 SINE B2 1 194 -22 8 688 217 288 0 29 chr9 13571441 13571509 -110504663 - ID4_ SINE ID -10 73 8 8 688 292 191 22 0 chr9 13571947 13572036 -110504136 + (TG)n Simple_repeat Simple_repeat 2 92 0 8 688 293 297 109 0 chr9 13572480 13572581 -110503591 - PB1D9 SINE Alu -8 112 1 9 688 189 273 73 0 chr9 13572851 13572906 -110503266 + L2b LINE L2 3313 3371 -4 9 688 381 314 29 0 chr9 13573117 13573222 -110502950 + PB1D10 SINE Alu 9 116 -1 9 688 721 163 0 39 chr9 13574231 13574359 -110501813 - MTC LTR MaLR -34 387 265 9 688 341 247 19 70 chr9 13574312 13574469 -110501703 - RMER10A LTR ERVL -135 307 159 9 688 324 64 0 21 chr9 13574478 13574526 -110501646 - RLTR19-int LTR ERVK -2438 3699 3653 9 688 266 0 29 0 chr9 13574535 13574569 -110501603 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 9 688 624 200 36 111 chr9 13574594 13574847 -110501325 - RLTR19-int LTR ERVK -2472 3665 3432 9 688 570 159 94 109 chr9 13575042 13575259 -110500913 - RLTR19-int LTR ERVK -3100 3037 2861 9 688 280 320 0 0 chr9 13575484 13575581 -110500591 - MER52-int LTR ERV1 -1319 5772 5676 9 688 21 0 0 0 chr9 13575664 13575685 -110500487 + AT_rich Low_complexity Low_complexity 1 21 0 9 688 260 269 7 97 chr9 13577117 13577261 -110498911 - MER52-int LTR ERV1 -3113 3978 3848 9 688 210 59 20 133 chr9 13577554 13577652 -110498520 + (TTAA)n Simple_repeat Simple_repeat 4 90 0 9 688 391 207 138 0 chr9 13577654 13577741 -110498431 - RLTR11B LTR ERVK -69 384 286 1 688 238 298 23 69 chr9 13577754 13577884 -110498288 - RLTR11B LTR ERVK -130 323 200 1 688 2632 210 37 39 chr9 13577937 13578586 -110497586 - RodERV21-int LTR ERV1 -2399 2592 1945 1 688 1095 185 151 35 chr9 13578597 13578882 -110497290 - RodERV21-int LTR ERV1 -3116 1875 1558 1 688 350 235 0 0 chr9 13578901 13578982 -110497190 - RodERV21-int LTR ERV1 -3551 1440 1360 1 688 233 53 103 17 chr9 13578985 13579043 -110497129 + T-rich Low_complexity Low_complexity 3 65 0 1 688 1476 264 70 55 chr9 13579055 13579656 -110496516 - RodERV21-int LTR ERV1 -3642 1349 740 1 688 246 174 0 0 chr9 13579739 13579785 -110496387 + GA-rich Low_complexity Low_complexity 4 49 0 1 688 1112 255 20 7 chr9 13579841 13580133 -110496039 - RodERV21-int LTR ERV1 -4688 303 8 1 688 259 238 142 39 chr9 13580189 13580316 -110495856 - RMER21B LTR ERV1 -279 563 424 1 688 204 67 0 0 chr9 13582023 13582053 -110494119 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 688 892 46 0 0 chr9 13582056 13582165 -110494007 - B1_Mm SINE Alu -5 142 34 1 688 301 148 0 76 chr9 13582109 13582175 -110493997 - 4.5SRNA scRNA scRNA -8 86 26 1 688 1486 165 49 0 chr9 13582213 13582305 -110493867 - RLTR12B LTR ERVK -249 279 184 1 688 681 13 0 0 chr9 13582305 13582383 -110493789 + (TTCTC)n Simple_repeat Simple_repeat 1 78 0 1 688 1486 165 49 0 chr9 13582383 13582556 -110493616 - RLTR12B LTR ERVK -345 183 2 1 688 2060 268 63 65 chr9 13582609 13583534 -110492638 - MYSERV-int LTR ERVK -1569 4981 4059 1 688 823 20 0 0 chr9 13583547 13583647 -110492525 - B1_Mus1 SINE Alu -30 118 19 1 688 565 167 28 0 chr9 13583670 13583778 -110492394 - MYSERV-int LTR ERVK -5180 3779 3669 1 688 1102 8 0 0 chr9 13583778 13583907 -110492265 + B1_Mm SINE Alu 18 146 -1 1 688 10203 177 53 24 chr9 13583907 13584608 -110491564 - MYSERV6-int LTR ERVK -4675 4284 3566 1 688 1362 87 11 5 chr9 13584608 13584794 -110491378 + B2_Mm2 SINE B2 1 187 -8 1 688 10203 177 53 24 chr9 13584794 13586440 -110489732 - MYSERV6-int LTR ERVK -5394 3565 1869 1 688 237 276 67 25 chr9 13586937 13586952 -110489220 - Charlie7 DNA MER1_type -927 1685 1671 1 688 2253 97 25 12 chr9 13586952 13587275 -110488897 + ORR1A2 LTR MaLR 1 327 0 1 688 237 276 67 25 chr9 13587275 13587378 -110488794 - Charlie7 DNA MER1_type -942 1670 1563 1 688 201 133 0 0 chr9 13587568 13587598 -110488574 + (TACTG)n Simple_repeat Simple_repeat 1 30 0 1 688 3093 161 25 2 chr9 13587599 13588120 -110488052 - MT2A LTR ERVL 0 533 1 1 688 382 303 80 15 chr9 13588181 13588382 -110487790 - Charlie7 DNA MER1_type -1084 1528 1315 1 688 236 273 50 38 chr9 13588382 13588462 -110487710 - MLT1A LTR MaLR -50 324 244 1 688 736 160 30 0 chr9 13589014 13589145 -110487027 + URR1B DNA MER1_type 91 225 0 1 688 373 303 66 31 chr9 13589279 13589401 -110486771 - L1MC3 LINE L1 -17 7768 7649 1 688 378 0 0 0 chr9 13589401 13589443 -110486729 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 688 373 303 66 31 chr9 13589443 13589548 -110486624 - L1MC3 LINE L1 -137 7648 7533 1 688 256 256 127 37 chr9 13589660 13589794 -110486378 - L1MC3 LINE L1 -401 7384 7239 1 688 202 380 65 0 chr9 13591766 13591858 -110484314 + MIR SINE MIR 38 135 -73 1 688 242 143 20 0 chr9 13591871 13591920 -110484252 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 688 348 253 40 148 chr9 13592664 13592726 -110483446 + MT2B LTR ERVL 108 150 -451 1 688 748 134 8 0 chr9 13592726 13592845 -110483327 + B1_Mur4 SINE Alu 1 120 -30 1 688 479 238 103 0 chr9 13593200 13593326 -110482846 - B1_Mur2 SINE Alu -10 139 1 1 688 235 314 0 0 chr9 13593388 13593439 -110482733 - ID4 SINE ID -9 74 24 1 688 340 186 207 22 chr9 13593780 13593894 -110482278 - B1_Mur4 SINE Alu -1 119 1 1 688 189 0 0 0 chr9 13595202 13595223 -110480949 + (T)n Simple_repeat Simple_repeat 1 21 0 1 688 1119 68 14 0 chr9 13595223 13595369 -110480803 - B1_Mus1 SINE Alu 0 148 1 1 688 1622 52 0 0 chr9 13595555 13595748 -110480424 - B2_Mm1t SINE B2 0 193 1 1 688 222 308 43 78 chr9 13596029 13596073 -110480099 - B3 SINE B2 -103 113 2 1 688 395 153 56 0 chr9 13596073 13596145 -110480027 - B4 SINE B4 -215 77 2 1 688 288 203 0 78 chr9 13596694 13596709 -110479463 - tRNA-Ala-GCY_ tRNA tRNA -1 74 16 1 688 346 143 0 0 chr9 13596709 13596758 -110479414 - ID SINE ID -153 71 23 1 688 221 303 29 43 chr9 13598138 13598207 -110477965 - ID2 SINE ID -9 74 7 1 688 247 321 68 52 chr9 13598569 13598704 -110477468 - MIR SINE MIR -85 183 43 1 688 330 87 0 0 chr9 13599026 13599072 -110477100 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1 688 180 200 0 0 chr9 13599072 13599112 -110477060 + (TAG)n Simple_repeat Simple_repeat 3 42 0 1 688 329 277 32 104 chr9 13602193 13602318 -110473854 - ORR1D2 LTR MaLR -251 119 4 1 688 259 287 113 84 chr9 13602886 13603160 -110473012 + ORR1E LTR MaLR 75 356 -3 1 688 807 295 45 26 chr9 13604590 13604858 -110471314 - B4A SINE B4 -17 275 3 1 688 268 278 104 70 chr9 13605162 13605363 -110470809 - Charlie1a DNA MER1_type -357 1098 891 1 688 218 375 21 10 chr9 13608049 13608066 -110468106 + ID_B1 SINE B4 63 160 -64 1 688 262 342 38 12 chr9 13608066 13608146 -110468026 + PB1D7 SINE Alu 1 82 -38 1 688 272 244 11 79 chr9 13608180 13608269 -110467903 + ID4 SINE ID 1 83 0 1 688 259 160 189 11 chr9 13608655 13608750 -110467422 - L1MB7 LINE L1 -30 6154 6043 1 688 504 207 207 9 chr9 13608767 13609011 -110467161 - L1MB7 LINE L1 -184 5994 5705 1 688 198 0 0 0 chr9 13610447 13610469 -110465703 + (T)n Simple_repeat Simple_repeat 1 22 0 1 688 283 246 31 0 chr9 13611156 13611221 -110464951 - ID4 SINE ID -13 70 4 1 688 226 157 118 0 chr9 13611924 13611975 -110464197 - Charlie4z DNA MER1_type -65 102 46 1 688 292 219 137 0 chr9 13613342 13613415 -110462757 - PB1D10 SINE Alu -1 116 34 1 688 229 242 15 61 chr9 13613673 13613739 -110462433 + MIRm SINE MIR 96 158 -118 1 688 546 191 109 0 chr9 13614570 13614680 -110461492 + B3A SINE B2 77 198 0 1 688 549 230 131 42 chr9 13615496 13615664 -110460508 + ID_B1 SINE B4 4 186 -38 1 688 285 245 89 69 chr9 13615580 13615681 -110460491 + PB1D10 SINE Alu 13 115 -2 1 688 288 0 0 0 chr9 13616052 13616084 -110460088 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 688 342 0 0 0 chr9 13616084 13616121 -110460051 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 688 232 339 0 0 chr9 13616703 13616715 -110459457 + ID_B1 SINE B4 79 137 -87 1 688 256 234 0 0 chr9 13616715 13616762 -110459410 + PB1D7 SINE Alu 10 56 -64 1 688 866 250 46 10 chr9 13616810 13617004 -110459168 + B3 SINE B2 2 202 -14 1 688 366 307 24 82 chr9 13617290 13617457 -110458715 - ORR1E LTR MaLR -72 307 124 1 688 537 246 87 82 chr9 13618390 13618598 -110457574 + B3 SINE B2 2 210 -6 1 688 330 276 0 50 chr9 13619954 13620034 -110456138 - ID4 SINE ID -6 77 2 1 688 502 234 98 21 chr9 13620139 13620298 -110455874 - B3 SINE B2 -5 211 44 1 688 1275 49 0 0 chr9 13620659 13620803 -110455369 + B1_Mus2 SINE Alu 3 146 -1 1 688 563 305 32 0 chr9 13621638 13621792 -110454380 - RSINE1 SINE B4 -6 159 1 1 688 215 139 28 0 chr9 13622353 13622389 -110453783 + ID SINE ID 6 42 -182 1 688 311 247 67 11 chr9 13623567 13623657 -110452515 - B1F SINE Alu -54 95 1 1 688 642 160 260 14 chr9 13623851 13623997 -110452175 + ORR1C1 LTR MaLR 4 185 -193 1 688 360 96 19 0 chr9 13623997 13624049 -110452123 - ORR1A3 LTR MaLR -11 315 263 1 688 907 134 5 165 chr9 13624363 13624569 -110451603 + ORR1A4 LTR MaLR 1 173 -153 1 688 2301 88 0 0 chr9 13624567 13624874 -110451298 - ORR1A2 LTR MaLR -8 319 13 1 688 981 155 54 16 chr9 13624856 13625040 -110451132 + ORR1A4 LTR MaLR 138 328 -1 1 688 307 336 76 51 chr9 13625158 13625315 -110450857 - B4 SINE B4 -3 289 129 1 688 868 230 129 10 chr9 13625547 13625740 -110450432 - B3 SINE B2 0 216 1 1 688 2680 236 90 90 chr9 13626349 13626639 -110449533 - RMER1C Other Other -9 1333 1048 1 688 1231 68 0 20 chr9 13626639 13626789 -110449383 - B1_Mus1 SINE Alu -1 147 1 1 688 2680 236 90 90 chr9 13626789 13627428 -110448744 - RMER1C Other Other -295 1047 404 1 688 1386 93 22 0 chr9 13627982 13628164 -110448008 + B2_Mm2 SINE B2 2 187 -8 1 688 419 342 147 31 chr9 13628978 13629367 -110446805 + L2 LINE L2 2218 2651 -768 1 689 244 294 53 2 chr9 13633862 13633941 -110442231 + B1F SINE Alu 20 98 -19 1 689 1510 65 16 5 chr9 13634360 13634547 -110441625 - B2_Mm2 SINE B2 -5 190 2 1 689 186 103 0 0 chr9 13634809 13634838 -110441334 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 689 471 222 10 29 chr9 13635755 13635857 -110440315 + PB1 SINE Alu 13 112 -15 1 689 685 284 55 51 chr9 13635951 13636207 -110439965 - Helitron3Na_Mam RC Helitron -85 401 145 1 689 623 318 306 17 chr9 13636328 13636760 -110439412 + MER82 DNA MER2_type 4 560 -93 1 689 1183 219 0 10 chr9 13636912 13637119 -110439053 - B3 SINE B2 -11 205 1 1 689 261 83 0 0 chr9 13637562 13637598 -110438574 + (CCA)n Simple_repeat Simple_repeat 3 38 0 1 689 26 30 0 0 chr9 13637926 13637959 -110438213 + AT_rich Low_complexity Low_complexity 1 33 0 1 689 271 361 40 24 chr9 13637963 13638088 -110438084 - RSINE1 SINE B4 -10 155 29 1 689 275 275 0 28 chr9 13638224 13638295 -110437877 - ID2 SINE ID -14 69 1 1 689 490 319 135 7 chr9 13639173 13639470 -110436702 - MER2 DNA MER2_type -6 339 5 1 689 256 202 101 0 chr9 13642406 13642485 -110433687 - PB1D9 SINE Alu -8 112 26 1 689 1011 178 101 29 chr9 13642761 13642969 -110433203 - URR1B DNA MER1_type -2 223 1 1 689 223 267 143 12 chr9 13643211 13643314 -110432858 - L2c LINE L2 -70 3317 3218 1 689 235 219 126 58 chr9 13644511 13644598 -110431574 + RLTR25B LTR ERVK 417 509 -519 1 689 774 96 0 0 chr9 13644529 13644633 -110431539 + B1_Mur4 SINE Alu 39 142 -8 1 689 248 0 0 30 chr9 13644904 13644937 -110431235 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 1 689 1197 37 0 0 chr9 13644940 13645074 -110431098 - B1_Mus2 SINE Alu -12 135 2 1 689 338 232 49 0 chr9 13646222 13646304 -110429868 - PB1D10 SINE Alu -5 112 27 1 689 189 0 0 0 chr9 13647548 13647569 -110428603 + (GGGTG)n Simple_repeat Simple_repeat 4 24 0 2 689 457 325 16 0 chr9 13647679 13647802 -110428370 + RSINE1 SINE B4 35 159 -6 2 689 1290 35 0 0 chr9 13647824 13647969 -110428203 + B1_Mus1 SINE Alu 2 146 -2 2 689 228 167 0 0 chr9 13647970 13648018 -110428154 + A-rich Low_complexity Low_complexity 1 48 0 2 689 28 29 0 0 chr9 13649576 13649611 -110426561 + AT_rich Low_complexity Low_complexity 1 35 0 2 689 222 133 0 0 chr9 13651742 13651772 -110424400 - B1_Mus2 SINE Alu -116 31 2 2 689 490 257 40 0 chr9 13651820 13651921 -110424251 + PB1D7 SINE Alu 15 119 -1 2 689 324 0 0 0 chr9 13652601 13652637 -110423535 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 689 475 235 24 0 chr9 13652638 13652723 -110423449 - RSINE1 SINE B4 -75 90 4 2 689 190 331 77 30 chr9 13652828 13652996 -110423176 + L2 LINE L2 2533 2708 -711 2 689 363 314 114 13 chr9 13653225 13653383 -110422789 - MLT1A0 LTR MaLR -32 333 160 2 689 1458 77 5 11 chr9 13654019 13654204 -110421968 + B2_Mm1t SINE B2 1 184 -9 2 689 904 201 26 52 chr9 13654549 13654780 -110421392 + URR1A DNA MER1_type 2 226 0 2 689 316 301 0 131 chr9 13655483 13655500 -110420672 - PB1D10 SINE Alu 0 117 5 2 689 512 273 18 26 chr9 13655500 13655613 -110420559 - ID_B1 SINE B4 -27 197 86 2 689 458 145 92 0 chr9 13655635 13655711 -110420461 + RMER15 LTR ERVL 493 575 0 2 689 21 0 0 0 chr9 13655992 13656013 -110420159 + AT_rich Low_complexity Low_complexity 1 21 0 2 689 514 231 90 51 chr9 13656015 13656166 -110420006 + B3A SINE B2 4 164 -34 2 689 459 0 0 0 chr9 13656166 13656217 -110419955 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 689 514 231 90 51 chr9 13656217 13656243 -110419929 + B3A SINE B2 165 188 -10 2 689 295 296 25 0 chr9 13656696 13656777 -110419395 - ID_B1 SINE B4 -130 94 12 2 689 504 345 128 71 chr9 13657656 13657809 -110418363 - MLT1G3 LTR MaLR -49 546 415 2 689 3691 23 2 0 chr9 13657809 13658204 -110417968 + MTA_Mm LTR MaLR 1 396 0 2 689 504 345 128 71 chr9 13658204 13658471 -110417701 - MLT1G3 LTR MaLR -181 414 102 2 689 723 238 14 0 chr9 13658781 13658928 -110417244 + B1_Mur1 SINE Alu 1 149 0 2 689 778 262 56 20 chr9 13659039 13659234 -110416938 + ID_B1 SINE B4 2 203 -21 2 689 549 278 66 15 chr9 13659251 13659448 -110416724 + L1MC5 LINE L1 7709 7915 -46 2 689 458 263 0 0 chr9 13661724 13661823 -110414349 + ORR1E LTR MaLR 69 167 -192 2 689 437 269 41 93 chr9 13662190 13662362 -110413810 + ORR1E LTR MaLR 204 366 -4 2 689 401 281 114 0 chr9 13662573 13662687 -110413485 + B4A SINE B4 150 276 -16 2 689 288 111 0 0 chr9 13662870 13662915 -110413257 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2 689 2172 182 50 39 chr9 13662917 13663356 -110412816 - Lx5 LINE L1 0 7050 6607 2 689 966 119 0 38 chr9 13663375 13663427 -110412745 - L1_Mur2 LINE L1 -3471 2406 2358 2 689 3033 103 71 2 chr9 13663427 13663836 -110412336 - RLTR9B LTR ERVK 0 437 1 2 689 966 119 0 38 chr9 13663836 13663940 -110412232 - L1_Mur2 LINE L1 -3520 2357 2256 2 689 1682 141 71 29 chr9 13663939 13664247 -110411925 - L1_Mur3 LINE L1 -3027 2850 2530 2 689 5184 142 29 8 chr9 13664245 13664317 -110411855 - L1_Mur3 LINE L1 -3733 2144 2073 2 689 225 0 0 0 chr9 13664317 13664342 -110411830 + (TGG)n Simple_repeat Simple_repeat 1 25 0 2 689 5184 161 26 5 chr9 13664342 13665430 -110410742 - L1_Mur3 LINE L1 -3805 2072 889 2 689 687 263 55 66 chr9 13665594 13666307 -110409865 + L1M3 LINE L1 2952 3770 -2373 2 689 940 257 119 34 chr9 13666347 13666641 -110409531 + MTE2b LTR MaLR 7 325 -54 2 689 262 269 14 29 chr9 13667408 13667477 -110408695 - B3A SINE B2 -129 69 2 2 689 207 0 0 0 chr9 13667479 13667502 -110408670 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 689 1145 64 0 0 chr9 13667505 13667646 -110408526 - B1_Mus1 SINE Alu -6 142 2 2 689 335 78 0 19 chr9 13667681 13667733 -110408439 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 689 444 179 24 0 chr9 13667737 13667821 -110408351 - ID_B1 SINE B4 -28 196 111 2 689 1494 33 0 0 chr9 13668118 13668298 -110407874 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 689 1276 103 11 21 chr9 13668298 13668486 -110407686 - B2_Mm1t SINE B2 -7 186 1 2 689 180 0 0 0 chr9 13669280 13669300 -110406872 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2 689 2227 74 10 7 chr9 13669303 13669601 -110406571 - L1Md_F2 LINE L1 -19 6563 6265 2 689 465 266 174 19 chr9 13669720 13669881 -110406291 - B3A SINE B2 -12 186 1 2 689 1242 73 0 0 chr9 13670047 13670226 -110405946 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 689 315 298 12 0 chr9 13670229 13670313 -110405859 - RSINE1 SINE B4 0 165 81 2 689 21 0 0 0 chr9 13670347 13670368 -110405804 + AT_rich Low_complexity Low_complexity 1 21 0 2 689 548 215 186 54 chr9 13670372 13670539 -110405633 - ID_B1 SINE B4 -35 189 1 2 689 1044 97 21 0 chr9 13670613 13670757 -110405415 + B1_Mm SINE Alu 1 147 0 2 689 201 94 0 0 chr9 13670784 13670816 -110405356 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 2 689 327 49 0 0 chr9 13670957 13670998 -110405174 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 689 249 204 252 0 chr9 13671033 13671136 -110405036 - RSINE1 SINE B4 -35 130 2 2 689 414 198 23 0 chr9 13671897 13671983 -110404189 + ORR1C1 LTR MaLR 1 88 -290 2 689 768 198 106 11 chr9 13671978 13672167 -110404005 + ORR1C1-int LTR MaLR 381 587 -922 2 689 3529 165 45 10 chr9 13672176 13672862 -110403310 + ORR1C1-int LTR MaLR 799 1508 -1 2 689 560 183 9 0 chr9 13672863 13672978 -110403194 + ORR1C1 LTR MaLR 1 116 -262 2 689 308 200 15 0 chr9 13673001 13673066 -110403106 + RLTR12A LTR ERVK 272 337 -231 2 689 323 232 211 0 chr9 13673110 13673205 -110402967 - PB1D7 SINE Alu -5 115 1 2 689 333 0 0 0 chr9 13673897 13673934 -110402238 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 689 495 239 206 0 chr9 13673940 13674120 -110402052 + ORR1C1 LTR MaLR 168 384 0 2 689 501 278 0 3 chr9 13674189 13674473 -110401699 + (CA)n Simple_repeat Simple_repeat 1 283 0 2 689 468 0 0 0 chr9 13674869 13674921 -110401251 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 689 461 278 9 0 chr9 13675333 13675441 -110400731 - B3A SINE B2 -88 110 2 2 689 34 24 0 0 chr9 13675891 13675932 -110400240 + AT_rich Low_complexity Low_complexity 1 41 0 2 689 879 256 81 14 chr9 13676220 13676442 -110399730 + B4A SINE B4 56 292 0 2 689 269 224 15 0 chr9 13677654 13677721 -110398451 - Charlie12 DNA MER1_type -6 2867 2800 2 689 528 250 50 44 chr9 13677769 13677949 -110398223 + RMER30 DNA MER1_type 20 200 -2 2 689 234 0 0 0 chr9 13679638 13679664 -110396508 + (T)n Simple_repeat Simple_repeat 1 26 0 2 689 195 173 0 0 chr9 13681193 13681245 -110394927 + T-rich Low_complexity Low_complexity 1 52 0 2 689 962 115 132 6 chr9 13682286 13682401 -110393771 + B2_Mm2 SINE B2 2 130 -65 2 689 351 0 0 0 chr9 13682401 13682440 -110393732 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 689 962 115 132 6 chr9 13682440 13682490 -110393682 + B2_Mm2 SINE B2 131 188 -7 2 689 6027 83 4 1 chr9 13682500 13683385 -110392787 + L1_Mus3 LINE L1 5488 6374 -264 2 689 1215 86 18 0 chr9 13683380 13683543 -110392629 - MusHAL1 LINE L1 -253 2459 2294 2 689 2682 86 5 10 chr9 13683552 13683950 -110392222 + MusHAL1 LINE L1 1871 2266 -446 2 689 937 0 18 0 chr9 13684290 13684403 -110391769 + (GA)n Simple_repeat Simple_repeat 1 115 0 2 689 716 236 44 6 chr9 13684796 13684954 -110391218 + RSINE1 SINE B4 2 165 0 2 689 578 214 0 49 chr9 13685373 13685496 -110390676 + PB1D9 SINE Alu 2 118 -2 2 689 333 0 0 0 chr9 13685702 13685739 -110390433 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 689 222 128 0 0 chr9 13685946 13685985 -110390187 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 689 4837 202 80 35 chr9 13686020 13687261 -110388911 + RMER12 LTR ERVK 1 1812 -36 2 689 698 260 92 0 chr9 13687279 13687452 -110388720 - B4 SINE B4 -24 268 80 2 689 5136 111 4 21 chr9 13687465 13688219 -110387953 - Lx LINE L1 -2 6652 5912 2 689 1024 110 0 0 chr9 13688219 13688365 -110387807 - L1_Mm LINE L1 -422 5461 5316 2 689 4125 121 57 3 chr9 13688363 13689034 -110387138 - L1_Mur2 LINE L1 -1635 4242 3536 2 689 10417 100 36 4 chr9 13689031 13690261 -110385911 - L1VL4 LINE L1 -1068 2491 1235 2 689 318 26 0 0 chr9 13690261 13690300 -110385872 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 689 10417 131 26 19 chr9 13690300 13691306 -110384866 - L1VL4 LINE L1 -2325 1234 210 2 689 372 247 26 0 chr9 13691326 13691403 -110384769 - B4 SINE B4 -212 80 2 2 689 1699 199 71 20 chr9 13691410 13691763 -110384409 - Lx5 LINE L1 -640 6410 6040 2 689 3146 138 16 13 chr9 13691763 13692430 -110383742 + Lx5 LINE L1 5354 6032 -1018 2 689 355 220 189 18 chr9 13692926 13693037 -110383135 + MER63B DNA AcHobo 284 413 -23 2 689 1144 179 236 26 chr9 13695031 13695155 -110381017 - ORR1D1 LTR MaLR 0 374 246 2 689 396 0 0 0 chr9 13695155 13695199 -110380973 + (CAGG)n Simple_repeat Simple_repeat 3 46 0 2 689 1144 179 236 26 chr9 13695199 13695383 -110380789 - ORR1D1 LTR MaLR -129 245 1 2 689 231 36 0 0 chr9 13695543 13695571 -110380601 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 689 998 229 54 17 chr9 13696280 13696612 -110379560 - ORR1E LTR MaLR 0 379 12 2 689 363 167 0 0 chr9 13696945 13697035 -110379137 + CT-rich Low_complexity Low_complexity 2 91 0 2 689 257 141 27 27 chr9 13697034 13697107 -110379065 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 689 340 277 35 68 chr9 13697853 13698015 -110378157 - LTR40a LTR ERVL -2 517 319 2 689 711 179 14 14 chr9 13698025 13698251 -110377921 + GA-rich Low_complexity Low_complexity 1 226 0 2 689 258 105 0 0 chr9 13698459 13698497 -110377675 + (TTAGGG)n Simple_repeat Simple_repeat 3 40 0 2 689 231 36 0 0 chr9 13700008 13700036 -110376136 + (A)n Simple_repeat Simple_repeat 1 28 0 2 689 281 353 90 26 chr9 13700499 13700842 -110375330 + L2 LINE L2 2407 2771 -648 2 689 206 294 0 0 chr9 13701200 13701251 -110374921 + (CATG)n Simple_repeat Simple_repeat 4 54 0 2 689 730 227 64 20 chr9 13701252 13701454 -110374718 - B4A SINE B4 -4 288 78 2 689 456 19 0 0 chr9 13703177 13703230 -110372942 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 689 265 278 66 11 chr9 13703432 13703538 -110372634 - MIR SINE MIR -107 155 48 2 689 1259 83 16 37 chr9 13704108 13704295 -110371877 - L1_Mus1 LINE L1 0 6567 6385 2 689 2626 40 59 0 chr9 13704295 13704618 -110371554 + L1Md_F2 LINE L1 5750 6091 -491 2 689 2770 88 10 34 chr9 13704664 13705082 -110371090 + L1_Mus3 LINE L1 6248 6638 0 3 689 783 216 41 31 chr9 13705874 13706057 -110370115 + B3A SINE B2 1 186 -12 3 689 492 18 0 0 chr9 13706057 13706114 -110370058 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 689 783 216 41 31 chr9 13706114 13706126 -110370046 + B3A SINE B2 187 198 0 3 689 598 300 60 57 chr9 13707879 13708211 -110367961 - L1MB2 LINE L1 -3 6168 5836 3 689 351 213 13 0 chr9 13709189 13709264 -110366908 - Lx8 LINE L1 -2 7471 7396 3 689 357 186 0 0 chr9 13709329 13709399 -110366773 + (CATA)n Simple_repeat Simple_repeat 2 71 0 3 689 202 286 49 61 chr9 13709528 13709610 -110366562 + L2 LINE L2 2846 2926 -493 3 689 1047 146 172 0 chr9 13710588 13710780 -110365392 + URR1B DNA MER1_type 1 225 0 3 689 584 244 238 0 chr9 13711361 13711533 -110364639 + ID_B1 SINE B4 2 214 -10 3 689 324 0 0 0 chr9 13711544 13711580 -110364592 + (CATA)n Simple_repeat Simple_repeat 2 37 0 3 689 331 234 39 0 chr9 13712808 13712885 -110363287 + B1F SINE Alu 36 115 -34 3 689 25 0 0 0 chr9 13713308 13713333 -110362839 + AT_rich Low_complexity Low_complexity 1 25 0 3 689 262 386 15 22 chr9 13713339 13713474 -110362698 - RSINE1 SINE B4 -29 136 3 3 689 357 145 0 0 chr9 13714364 13714426 -110361746 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 689 227 331 54 16 chr9 13715436 13715565 -110360607 + MLT1D LTR MaLR 6 139 -366 3 689 333 0 0 0 chr9 13716106 13716143 -110360029 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 3 689 420 290 84 10 chr9 13716145 13716374 -110359798 - L1M3 LINE L1 -1012 5134 4863 3 689 2358 274 72 7 chr9 13719367 13720062 -110356110 + Lx8 LINE L1 6354 7093 -380 3 689 251 214 27 41 chr9 13720183 13720256 -110355916 + Lx8 LINE L1 7394 7465 -8 3 689 1771 188 77 0 chr9 13720260 13720611 -110355561 - ORR1C1 LTR MaLR 0 378 1 3 689 23 33 0 0 chr9 13721020 13721050 -110355122 + AT_rich Low_complexity Low_complexity 1 30 0 3 689 255 240 53 0 chr9 13721576 13721651 -110354521 - MIRc SINE MIR -118 150 72 3 689 645 271 66 0 chr9 13721666 13721817 -110354355 + ID_B1 SINE B4 54 214 -10 3 689 214 119 23 23 chr9 13721817 13721860 -110354312 + (CAGA)n Simple_repeat Simple_repeat 1 43 0 3 689 224 307 19 47 chr9 13722017 13722123 -110354049 - B1_Mur2 SINE Alu -45 104 2 3 689 261 245 110 20 chr9 13722155 13722255 -110353917 + L1MB5 LINE L1 6057 6165 -9 3 689 1123 65 0 0 chr9 13722388 13722526 -110353646 + B1_Mus1 SINE Alu 2 139 -9 3 689 426 20 0 0 chr9 13722526 13722577 -110353595 + (CTAAA)n Simple_repeat Simple_repeat 3 53 0 3 689 405 0 0 0 chr9 13722771 13722816 -110353356 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 689 369 0 0 0 chr9 13722816 13722856 -110353316 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 689 199 287 119 0 chr9 13724203 13724304 -110351868 - L2a LINE L2 -9 3417 3305 3 689 436 363 63 19 chr9 13725098 13725511 -110350661 - L1M4c LINE L1 -4587 1797 1367 3 689 349 251 80 36 chr9 13725521 13725773 -110350399 - L1M3d LINE L1 -4588 2065 1807 3 689 318 289 95 79 chr9 13725895 13726147 -110350025 - ORR1E LTR MaLR -42 317 62 3 689 320 295 28 19 chr9 13726164 13726271 -110349901 + ID_B1 SINE B4 2 109 -115 3 689 8016 188 74 30 chr9 13726982 13729058 -110347114 - Lx6 LINE L1 -5 7455 5263 3 689 840 313 72 4 chr9 13729501 13729764 -110346408 + B4 SINE B4 9 289 -3 3 689 371 216 133 78 chr9 13732205 13732615 -110343557 - L1MEg LINE L1 -3770 2551 2122 3 689 242 292 37 37 chr9 13732688 13732823 -110343349 - L1MEg LINE L1 -4259 2143 2009 3 689 249 253 78 72 chr9 13733459 13733485 -110342687 - L1MEg LINE L1 -4697 1811 1788 3 689 3632 80 6 2 chr9 13733485 13733962 -110342210 - L1_Mus3 LINE L1 -7 6631 6153 3 689 466 301 118 46 chr9 13733962 13734640 -110341532 - L1MEg LINE L1 -4535 1882 1056 3 689 338 248 27 54 chr9 13734717 13734828 -110341344 - L1MEg LINE L1 -5495 907 800 3 689 302 263 53 3 chr9 13734872 13734964 -110341208 - PB1 SINE Alu -20 97 2 3 689 277 273 7 97 chr9 13735508 13735662 -110340510 - RMER12 LTR ERVK -460 862 723 3 689 366 364 27 22 chr9 13735735 13735960 -110340212 + MIRb SINE MIR 4 229 -39 3 689 605 253 6 41 chr9 13737339 13737508 -110338664 - RSINE1 SINE B4 0 165 3 3 689 21 0 0 0 chr9 13737811 13737832 -110338340 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 190 333 39 47 chr9 13738881 13739010 -110337162 + MIR SINE MIR 17 144 -64 3 689 397 227 52 0 chr9 13739090 13739187 -110336985 + PB1D10 SINE Alu 9 110 -7 3 689 600 53 0 0 chr9 13740045 13740121 -110336051 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 689 361 341 145 17 chr9 13740193 13740545 -110335627 - MLT1D LTR MaLR -9 496 100 3 689 318 87 0 0 chr9 13740571 13740617 -110335555 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 3 689 1010 130 6 0 chr9 13740617 13740794 -110335378 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 3 689 37602 60 3 3 chr9 13742410 13748611 -110327561 - L1Md_F3 LINE L1 -14 6570 416 3 689 354 303 150 9 chr9 13748779 13748992 -110327180 - MIR SINE MIR 0 262 20 3 689 835 251 0 79 chr9 13749010 13749104 -110327068 - B3 SINE B2 -4 212 130 3 689 2185 139 82 0 chr9 13749104 13749457 -110326715 + RLTR14 LTR ERV1 1 382 0 3 689 835 251 0 79 chr9 13749457 13749578 -110326594 - B3 SINE B2 -87 129 14 3 689 738 254 90 43 chr9 13749952 13750207 -110325965 + B4A SINE B4 2 268 -24 3 689 255 133 0 0 chr9 13750248 13750293 -110325879 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 689 234 258 226 0 chr9 13750303 13750396 -110325776 - MER5A DNA MER1_type -68 121 8 3 689 443 242 20 0 chr9 13750817 13750916 -110325256 - ORR1E LTR MaLR -258 101 1 3 689 401 316 102 34 chr9 13751027 13751222 -110324950 - B3A SINE B2 -4 212 11 3 689 351 311 72 24 chr9 13751251 13751376 -110324796 - ID_B1 SINE B4 -30 194 64 3 689 2174 121 92 9 chr9 13751706 13752041 -110324131 + ORR1B2 LTR MaLR 1 363 -4 3 689 659 174 150 111 chr9 13752042 13752075 -110324097 - B3 SINE B2 0 216 184 3 689 204 97 0 0 chr9 13752075 13752106 -110324066 + (CATATA)n Simple_repeat Simple_repeat 4 34 0 3 689 659 174 150 111 chr9 13752106 13752279 -110323893 - B3 SINE B2 -33 183 2 3 689 546 284 45 15 chr9 13752866 13753066 -110323106 + B3 SINE B2 1 206 -10 3 689 871 260 34 0 chr9 13753591 13753799 -110322373 - B3 SINE B2 -1 215 1 3 689 438 225 35 18 chr9 13754302 13754415 -110321757 - MTEa LTR MaLR -5 374 260 3 689 663 37 0 0 chr9 13754423 13754505 -110321667 + (GA)n Simple_repeat Simple_repeat 1 82 0 3 689 3445 30 5 0 chr9 13754654 13755048 -110321124 - MTA_Mm LTR MaLR 0 396 1 3 689 545 328 126 15 chr9 13756948 13757353 -110318819 - Arthur1B DNA Tip100 -305 920 471 3 689 831 46 0 0 chr9 13757743 13757851 -110318321 + (TG)n Simple_repeat Simple_repeat 1 108 0 3 689 312 236 15 82 chr9 13758279 13758413 -110317759 - Lx8 LINE L1 0 7473 7349 3 689 589 288 99 0 chr9 13758439 13758651 -110317521 - Lx8 LINE L1 -175 7298 7066 3 689 6929 83 19 20 chr9 13758701 13759671 -110316501 - Lx LINE L1 -2 6652 5684 3 689 1116 66 12 29 chr9 13759673 13759686 -110316486 - B2_Mm1a SINE B2 -24 169 161 3 689 279 0 0 0 chr9 13759686 13759717 -110316455 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 689 1116 66 12 29 chr9 13759717 13759874 -110316298 - B2_Mm1a SINE B2 -33 160 2 3 689 2128 119 26 0 chr9 13759874 13760186 -110315986 - L1_Mm LINE L1 -185 5698 5379 3 689 4781 151 8 1 chr9 13760184 13760978 -110315194 + L1_Mur2 LINE L1 4328 5126 -751 3 689 1870 324 59 13 chr9 13760980 13761724 -110314448 - Lx8 LINE L1 -396 7077 6300 3 689 384 22 0 0 chr9 13761893 13761938 -110314234 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 689 228 35 0 0 chr9 13761946 13761975 -110314197 + (CAGAGA)n Simple_repeat Simple_repeat 6 34 0 3 689 548 262 104 19 chr9 13762006 13762313 -110313859 + L1_Rod LINE L1 1673 2005 -3842 3 86 2820 233 80 67 chr9 13762331 13763677 -110312495 - RMER1B Other Other -2 1064 1 3 690 2831 62 64 3 chr9 13763677 13764050 -110312122 - MTA_Mm LTR MaLR 0 396 1 3 690 7620 80 20 50 chr9 13764050 13765182 -110310990 - MTA_Mm-int LTR MaLR 0 1098 1 3 690 3203 56 5 2 chr9 13765182 13765577 -110310595 - MTA_Mm LTR MaLR 0 396 1 3 690 942 254 47 200 chr9 13765577 13765695 -110310477 - RMER1B Other Other -879 187 47 3 690 419 133 99 5 chr9 13766122 13766142 -110310030 + L1_Mus3 LINE L1 5783 5808 -830 3 690 5934 39 0 19 chr9 13766142 13766875 -110309297 - L1Md_F2 LINE L1 0 6582 5864 3 690 450 19 0 0 chr9 13766875 13766927 -110309245 + L1Md_F2 LINE L1 5809 5860 -722 3 690 21 0 0 0 chr9 13767334 13767355 -110308817 + AT_rich Low_complexity Low_complexity 1 21 0 3 690 500 264 7 13 chr9 13768043 13768193 -110307979 + MamSINE1 SINE tRNA 17 165 -125 3 690 865 332 29 37 chr9 13768679 13769057 -110307115 + Lx8 LINE L1 6361 6735 -738 3 690 975 256 78 122 chr9 13769627 13770151 -110306021 + RLTR18B LTR ERVK 5 505 -7 3 690 437 89 0 15 chr9 13770250 13770318 -110305854 + (TCTCCC)n Simple_repeat Simple_repeat 1 67 0 3 690 1288 231 18 15 chr9 13770336 13770609 -110305563 - B4 SINE B4 -18 274 1 3 690 216 200 0 0 chr9 13771829 13771879 -110304293 + (CCCA)n Simple_repeat Simple_repeat 3 52 0 3 690 300 91 0 0 chr9 13771896 13771940 -110304232 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 3 690 642 167 21 28 chr9 13771947 13772089 -110304083 - MTC LTR MaLR -280 141 1 3 690 586 365 104 8 chr9 13772143 13772497 -110303675 + MTC LTR MaLR 20 407 -14 3 690 206 231 0 0 chr9 13773595 13773634 -110302538 + GA-rich Low_complexity Low_complexity 1 39 0 3 690 798 292 37 9 chr9 13774263 13774481 -110301691 + B4A SINE B4 3 226 -66 3 690 303 250 200 7 chr9 13774492 13774637 -110301535 + Lx9 LINE L1 7316 7488 -156 3 690 262 245 0 0 chr9 13774676 13774729 -110301443 + B4A SINE B4 224 276 -16 3 690 342 151 0 0 chr9 13774771 13774844 -110301328 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 690 322 274 204 25 chr9 13777037 13777272 -110298900 - MER33 DNA MER1_type -28 296 20 3 690 337 295 52 21 chr9 13777742 13777839 -110298333 - RSINE1 SINE B4 -29 136 37 3 690 312 27 0 0 chr9 13777950 13777987 -110298185 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 690 843 105 0 0 chr9 13778323 13778447 -110297725 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 3 690 288 200 0 0 chr9 13778902 13778962 -110297210 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 690 659 158 8 0 chr9 13779763 13779890 -110296282 + CT-rich Low_complexity Low_complexity 1 128 0 4 690 447 35 0 0 chr9 13780091 13780148 -110296024 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 690 269 115 62 10 chr9 13780597 13780694 -110295478 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 4 690 387 121 0 0 chr9 13780759 13780817 -110295355 - URR1B DNA MER1_type 0 225 168 4 690 494 165 0 0 chr9 13780804 13780895 -110295277 - MTC LTR MaLR -330 91 1 4 690 287 197 26 26 chr9 13780996 13781074 -110295098 + CYRA11_Mm Unknown Y-chromosome 223 300 -317 4 690 672 129 187 0 chr9 13781004 13781143 -110295029 - URR1B DNA MER1_type -57 168 4 4 690 518 73 64 0 chr9 13781171 13781281 -110294891 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 4 690 240 253 0 0 chr9 13782192 13782267 -110293905 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 690 312 281 40 40 chr9 13783061 13783187 -110292985 - ORR1E LTR MaLR -225 134 9 4 690 714 323 94 9 chr9 13784142 13784482 -110291690 + MLT1H1 LTR MaLR 11 379 -176 4 690 432 0 0 0 chr9 13784683 13784731 -110291441 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 690 260 299 17 70 chr9 13785152 13785267 -110290905 + MLT1H1-int LTR MaLR 1151 1259 -150 4 690 519 346 9 9 chr9 13785566 13785776 -110290396 + MLT1H1 LTR MaLR 343 552 -3 4 690 437 285 0 37 chr9 13786109 13786273 -110289899 - MER121 Unknown Unknown -234 178 21 4 690 226 348 33 0 chr9 13786518 13786679 -110289493 + MIR SINE MIR 41 212 -56 4 690 970 237 86 19 chr9 13786803 13787070 -110289102 - B4A SINE B4 -4 288 4 4 690 2020 37 4 0 chr9 13788796 13789040 -110287132 - L1Md_F2 LINE L1 -12 6570 6326 4 690 216 281 134 97 chr9 13789143 13789277 -110286895 + B3A SINE B2 5 143 -55 4 690 375 23 0 0 chr9 13790166 13790210 -110285962 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 690 207 0 0 0 chr9 13790210 13790232 -110285940 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 690 1474 75 5 0 chr9 13790950 13791138 -110285034 + B2_Mm1a SINE B2 2 190 -3 4 690 493 282 149 84 chr9 13791179 13791458 -110284714 - MTE2b LTR MaLR 0 379 84 4 690 220 0 56 28 chr9 13791458 13791494 -110284678 + (CAAT)n Simple_repeat Simple_repeat 3 39 0 4 690 493 282 149 84 chr9 13791494 13791570 -110284602 - MTE2b LTR MaLR -296 83 2 4 690 309 82 0 0 chr9 13791588 13791637 -110284535 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 690 441 0 0 0 chr9 13791696 13791745 -110284427 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 690 514 268 102 67 chr9 13792116 13792460 -110283712 + RLTR28B LTR ERVL 88 443 -38 4 690 1124 138 109 38 chr9 13792483 13792694 -110283478 - URR1A DNA MER1_type 0 226 1 4 690 285 278 285 20 chr9 13792708 13792958 -110283214 + Lx9 LINE L1 7091 7465 -179 4 690 363 44 0 0 chr9 13792958 13793003 -110283169 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 690 2224 160 48 149 chr9 13794263 13794852 -110281320 - RLTR24 LTR ERV1 0 529 1 4 690 665 305 9 14 chr9 13794912 13795128 -110281044 - ID_B1 SINE B4 -8 216 2 4 690 473 58 14 0 chr9 13795285 13795354 -110280818 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 4 690 601 316 6 12 chr9 13796064 13796234 -110279938 + ID_B1 SINE B4 2 170 -54 4 690 202 56 56 0 chr9 13796311 13796347 -110279825 + (CCCCAG)n Simple_repeat Simple_repeat 3 40 0 4 690 479 243 86 135 chr9 13796351 13796655 -110279517 + RMER10A LTR ERVL 129 417 -25 4 690 26 50 0 0 chr9 13796746 13796786 -110279386 + AT_rich Low_complexity Low_complexity 1 40 0 4 690 344 306 54 9 chr9 13796852 13796964 -110279208 + RMER1B Other Other 37 153 -913 4 690 641 302 75 11 chr9 13797126 13797491 -110278681 + RMER1C Other Other 162 750 -592 4 690 858 222 89 85 chr9 13797503 13797774 -110278398 + RMER1C Other Other 1067 1338 -4 4 690 238 309 24 12 chr9 13798022 13798104 -110278068 + GA-rich Low_complexity Low_complexity 3 85 0 4 690 201 250 0 50 chr9 13798144 13798224 -110277948 + A-rich Low_complexity Low_complexity 1 76 0 4 690 739 275 140 42 chr9 13798605 13798812 -110277360 + L1_Rod LINE L1 5096 5328 -549 4 690 674 55 0 11 chr9 13798812 13798904 -110277268 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 4 690 739 271 140 45 chr9 13798904 13799213 -110276959 + L1_Rod LINE L1 5291 5635 -212 4 690 311 260 61 20 chr9 13801138 13801236 -110274936 + L1_Rod LINE L1 5739 5840 -7 4 690 21 36 0 0 chr9 13801421 13801449 -110274723 + AT_rich Low_complexity Low_complexity 1 28 0 4 690 226 280 0 0 chr9 13802061 13802111 -110274061 + ID4 SINE ID 34 83 0 4 690 347 250 100 0 chr9 13803488 13803588 -110272584 - ID_B1 SINE B4 -34 190 81 4 690 2659 121 22 62 chr9 13804900 13805348 -110270824 - RLTR23 LTR ERV1 0 430 1 4 690 195 129 0 0 chr9 13805440 13805471 -110270701 + (A)n Simple_repeat Simple_repeat 1 31 0 4 690 312 307 127 13 chr9 13805780 13806008 -110270164 + B4A SINE B4 3 256 -36 4 690 1664 182 186 31 chr9 13806015 13806401 -110269771 - RLTR41 LTR ERV1 0 446 1 4 690 195 277 0 84 chr9 13806514 13806585 -110269587 + L2 LINE L2 1300 1364 -2055 4 690 180 0 0 0 chr9 13807093 13807113 -110269059 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 690 1395 287 89 12 chr9 13808286 13808587 -110267585 - Lx8 LINE L1 -166 7307 6977 4 690 393 39 0 0 chr9 13808587 13808638 -110267534 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 690 1395 287 89 12 chr9 13808638 13808830 -110267342 - Lx8 LINE L1 -497 6976 6776 4 690 389 177 40 30 chr9 13809057 13809156 -110267016 - L1MA4 LINE L1 -442 5858 5759 4 690 352 250 11 0 chr9 13809480 13809568 -110266604 - RSINE1 SINE B4 -74 91 3 4 690 231 259 52 26 chr9 13809569 13809684 -110266488 + MIRb SINE MIR 122 239 -29 4 690 423 182 130 15 chr9 13810568 13810695 -110265477 - ORR1D2 LTR MaLR -2 368 222 4 690 808 254 58 12 chr9 13810887 13811130 -110265042 - ORR1D2 LTR MaLR -111 259 6 4 690 402 74 0 0 chr9 13811568 13811622 -110264550 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 690 360 379 63 55 chr9 13812111 13812510 -110263662 + MLT1K LTR MaLR 130 531 -64 4 690 1078 197 18 5 chr9 13813563 13813782 -110262390 + URR1A DNA MER1_type 2 223 -3 4 690 581 226 48 8 chr9 13813787 13813912 -110262260 - B1F SINE Alu -15 134 5 4 690 486 176 0 58 chr9 13814266 13814387 -110261785 + L1Md_F3 LINE L1 6470 6583 -1 4 690 269 254 0 6 chr9 13814416 13814590 -110261582 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 690 1227 196 9 4 chr9 13815613 13815838 -110260334 + URR1A DNA MER1_type 1 226 0 4 690 222 37 0 0 chr9 13816377 13816404 -110259768 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 4 690 263 370 86 6 chr9 13816547 13816721 -110259451 + LTR16A LTR ERVL 2 189 -262 4 690 258 328 70 8 chr9 13816786 13816915 -110259257 + LTR16A LTR ERVL 263 399 -52 4 690 340 195 13 13 chr9 13816917 13816995 -110259177 - MLT1A0 LTR MaLR -7 358 281 4 690 319 254 47 39 chr9 13817081 13817208 -110258964 - MLT1A0 LTR MaLR -236 129 2 4 690 183 241 35 53 chr9 13817614 13817671 -110258501 - L2c LINE L2 0 3387 3332 4 690 1145 71 0 0 chr9 13818026 13818167 -110258005 + B1_Mus1 SINE Alu 1 141 -7 4 690 186 43 0 0 chr9 13818167 13818190 -110257982 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 690 216 0 0 0 chr9 13818194 13818218 -110257954 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 690 462 271 117 29 chr9 13818301 13818472 -110257700 - B3A SINE B2 -11 187 2 4 690 206 276 35 79 chr9 13818481 13818595 -110257577 - L2c LINE L2 -503 2916 2808 4 690 744 162 21 7 chr9 13820138 13820281 -110255891 - B1_Mur4 SINE Alu 0 150 6 4 690 376 216 0 119 chr9 13820170 13820296 -110255876 - MT2B LTR ERVL -336 265 155 4 690 180 0 0 0 chr9 13820334 13820354 -110255818 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 690 238 213 16 32 chr9 13820507 13820570 -110255602 - B3A SINE B2 -136 62 1 4 690 185 35 69 0 chr9 13821102 13821131 -110255041 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 690 482 327 97 1 chr9 13821264 13821443 -110254729 + B4A SINE B4 87 292 0 4 690 459 0 0 0 chr9 13821498 13821549 -110254623 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 690 3974 80 8 0 chr9 13822152 13822680 -110253492 + L1_Mus3 LINE L1 6107 6638 0 4 690 319 321 0 0 chr9 13823189 13823270 -110252902 + HERV16-int LTR ERVL 958 1038 -3958 4 690 239 0 0 31 chr9 13823374 13823406 -110252766 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 690 1421 73 10 10 chr9 13824112 13824305 -110251867 - B2_Mm1t SINE B2 0 193 1 4 690 187 344 0 30 chr9 13825902 13825968 -110250204 + L2b LINE L2 3277 3340 -35 4 690 270 73 0 0 chr9 13826620 13826661 -110249511 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 690 720 217 122 0 chr9 13826661 13826841 -110249331 - ID_B1 SINE B4 -18 206 5 4 690 332 311 47 63 chr9 13827185 13827202 -110248970 + ID_B1 SINE B4 80 204 -20 4 690 491 231 55 18 chr9 13827202 13827312 -110248860 + B1F SINE Alu 16 129 -20 4 690 635 163 6 0 chr9 13827314 13827480 -110248692 + GA-rich Low_complexity Low_complexity 1 167 0 4 690 188 167 0 20 chr9 13828386 13828435 -110247737 + CT-rich Low_complexity Low_complexity 3 50 0 4 690 588 187 0 0 chr9 13829804 13829927 -110246245 + (CA)n Simple_repeat Simple_repeat 1 123 0 4 690 385 196 21 75 chr9 13830250 13830517 -110245655 + (TATG)n Simple_repeat Simple_repeat 1 252 0 4 690 303 212 28 66 chr9 13830421 13830603 -110245569 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 4 690 443 62 37 12 chr9 13830609 13830690 -110245482 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 690 838 235 88 180 chr9 13830782 13830879 -110245293 - RLTR20C LTR ERVK 0 560 462 4 690 315 49 0 0 chr9 13830879 13830920 -110245252 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 690 896 227 54 93 chr9 13830920 13831410 -110244762 - RLTR20C LTR ERVK -99 461 13 4 690 317 264 104 37 chr9 13831538 13831672 -110244500 + B1F1 SINE Alu 1 143 -6 4 690 215 309 29 0 chr9 13831675 13831743 -110244429 + B2_Mm1t SINE B2 2 71 -122 4 690 896 279 71 42 chr9 13832133 13832371 -110243801 - L1MDa LINE L1 -4338 2295 2036 4 690 549 0 0 0 chr9 13832371 13832432 -110243740 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 4 690 896 279 71 42 chr9 13832432 13832601 -110243571 - L1MDa LINE L1 -4598 2035 1876 4 690 1137 292 67 89 chr9 13832618 13833137 -110243035 - RMER15 LTR ERVL -5 570 63 4 690 7750 48 2 2 chr9 13833142 13834080 -110242092 - L1Md_F2 LINE L1 -1 6581 5644 4 690 654 283 33 0 chr9 13834631 13834811 -110241361 - B3A SINE B2 -10 188 3 4 690 804 40 0 0 chr9 13836089 13836189 -110239983 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 5 690 3626 248 77 44 chr9 13837280 13838449 -110237723 + Lx6 LINE L1 5963 7434 -26 5 690 348 278 145 24 chr9 13838646 13838812 -110237360 - MIR SINE MIR -9 253 68 5 690 824 283 111 20 chr9 13838847 13839190 -110236982 - MTEb LTR MaLR 0 379 6 5 690 935 120 231 16 chr9 13840892 13841078 -110235094 - URR1A DNA MER1_type 0 226 1 5 690 238 338 25 0 chr9 13841143 13841223 -110234949 - L2c LINE L2 -12 3375 3294 5 690 16664 166 59 36 chr9 13841715 13843018 -110233154 - L1_Mur3 LINE L1 -1121 4759 3474 5 690 558 43 0 0 chr9 13843018 13843087 -110233085 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 690 16664 166 59 36 chr9 13843087 13844521 -110231651 - L1_Mur3 LINE L1 -2407 3473 2058 5 690 522 0 0 0 chr9 13844521 13844579 -110231593 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 690 16664 157 43 28 chr9 13844579 13845694 -110230478 - L1_Mur3 LINE L1 -3823 2057 818 5 690 336 295 70 21 chr9 13846279 13846421 -110229751 - B1F1 SINE Alu 0 149 1 5 690 365 205 217 0 chr9 13847424 13847507 -110228665 - B1F SINE Alu -9 140 40 5 690 240 336 25 25 chr9 13847530 13847649 -110228523 - PB1D7 SINE Alu 0 120 2 5 690 450 0 0 0 chr9 13848547 13848597 -110227575 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 690 261 0 0 0 chr9 13848890 13848919 -110227253 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 690 232 297 153 0 chr9 13848937 13849048 -110227124 - Lx9 LINE L1 -214 7430 7303 5 690 460 171 0 28 chr9 13851760 13851868 -110224304 + CT-rich Low_complexity Low_complexity 4 108 0 5 690 267 319 39 90 chr9 13852898 13853053 -110223119 - LTR88b LTR Gypsy? -13 824 678 5 690 360 0 0 0 chr9 13853870 13853910 -110222262 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 5 690 1070 248 146 0 chr9 13853933 13854256 -110221916 + MTEa LTR MaLR 1 370 -9 5 690 256 302 118 8 chr9 13854359 13854486 -110221686 + MLT1A LTR MaLR 173 313 -61 5 690 245 223 111 46 chr9 13854917 13855025 -110221147 - MIR SINE MIR -99 163 49 5 690 2715 60 0 0 chr9 13855401 13855787 -110220385 - L1_Mus1 LINE L1 -662 5905 5520 5 690 1773 78 13 0 chr9 13855787 13856019 -110220153 + L1_Mus1 LINE L1 6333 6567 0 5 690 1082 268 61 6 chr9 13857356 13857686 -110218486 + MTE2b LTR MaLR 19 366 -13 5 690 633 291 38 6 chr9 13859058 13859241 -110216931 - ID_B1 SINE B4 0 224 36 5 690 279 0 0 0 chr9 13860534 13860565 -110215607 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 690 456 295 13 26 chr9 13861360 13861513 -110214659 + RSINE1 SINE B4 6 156 -9 5 690 335 197 33 0 chr9 13861985 13862046 -110214126 + MTEb LTR MaLR 49 111 -268 5 690 419 279 96 0 chr9 13862084 13862220 -110213952 + MTEb LTR MaLR 228 376 -3 5 690 292 274 66 81 chr9 13862404 13862541 -110213631 - MLT1E1A LTR MaLR -189 491 299 5 690 237 234 0 0 chr9 13862733 13862780 -110213392 - MLT1E1A LTR MaLR -560 94 48 5 690 180 0 0 0 chr9 13863283 13863303 -110212869 + (T)n Simple_repeat Simple_repeat 1 20 0 5 690 282 29 0 0 chr9 13864501 13864536 -110211636 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 690 212 171 0 0 chr9 13864625 13864666 -110211506 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 5 690 740 94 0 0 chr9 13864666 13864772 -110211400 - B2_Mm2 SINE B2 -88 107 2 5 690 1439 33 0 11 chr9 13865129 13865311 -110210861 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 5 690 690 120 8 16 chr9 13865311 13865438 -110210734 + (TCCCC)n Simple_repeat Simple_repeat 5 130 0 5 690 335 157 14 0 chr9 13866877 13866947 -110209225 + CT-rich Low_complexity Low_complexity 3 73 0 5 690 1062 103 17 6 chr9 13866949 13867125 -110209047 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 5 690 695 25 0 0 chr9 13867494 13867574 -110208598 - ETnERV-int LTR ERVK -3234 80 1 5 690 1880 106 31 22 chr9 13867574 13867893 -110208279 - RLTRETN_Mm LTR ERVK 0 322 1 5 690 180 0 0 0 chr9 13868405 13868425 -110207747 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 690 1714 149 27 30 chr9 13869212 13869578 -110206594 + RMER17C LTR ERVK 1 365 -45 5 690 2819 91 105 10 chr9 13869578 13869988 -110206184 - RLTR44B LTR ERVK 0 449 1 5 690 5934 45 0 6 chr9 13869988 13870687 -110205485 - RLTR44-int LTR ERVK 0 2812 2118 5 690 5111 120 37 36 chr9 13870700 13871723 -110204449 - RLTR44-int LTR ERVK -1323 1489 659 5 690 495 0 0 0 chr9 13871982 13872037 -110204135 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 690 1523 228 96 52 chr9 13872318 13872799 -110203373 - Lx9 LINE L1 0 7644 7143 5 690 222 150 0 0 chr9 13872799 13872839 -110203333 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5 690 536 186 52 11 chr9 13872839 13873013 -110203159 - RMER17C LTR ERVK -135 275 95 5 690 363 263 0 10 chr9 13873016 13873112 -110203060 - Lx9 LINE L1 -491 7153 7059 5 690 619 283 48 40 chr9 13873587 13873815 -110202357 + B4A SINE B4 1 230 -62 5 690 691 241 25 6 chr9 13873815 13873974 -110202198 + RSINE1 SINE B4 3 164 -1 5 690 342 0 0 0 chr9 13874935 13874973 -110201199 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 690 369 0 0 0 chr9 13875708 13875749 -110200423 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 690 1009 297 69 0 chr9 13876386 13876736 -110199436 - MTEb LTR MaLR -5 374 1 5 690 3707 152 43 116 chr9 13876740 13876890 -110199282 + Lx7 LINE L1 4719 4845 -1035 5 690 357 24 0 0 chr9 13876890 13876932 -110199240 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 5 690 3707 152 43 116 chr9 13876932 13877716 -110198456 + Lx7 LINE L1 4846 5585 -295 5 690 1589 209 161 7 chr9 13877715 13878124 -110198048 + Lx7 LINE L1 5794 6265 -1431 5 690 432 121 0 0 chr9 13878123 13878189 -110197983 + Lx6 LINE L1 6667 6732 -728 5 690 2091 44 0 0 chr9 13878209 13878458 -110197714 + L1Md_T LINE L1 6334 6582 0 5 690 2676 260 68 43 chr9 13878455 13879331 -110196841 + Lx7 LINE L1 6754 7651 -45 5 690 249 209 0 87 chr9 13879334 13879604 -110196568 + GA-rich Low_complexity Low_complexity 1 246 0 5 690 291 250 27 18 chr9 13879666 13879776 -110196396 + Lx6 LINE L1 7337 7447 -13 5 690 24 0 0 0 chr9 13879795 13879819 -110196353 + AT_rich Low_complexity Low_complexity 1 24 0 5 690 204 97 0 0 chr9 13881996 13882027 -110194145 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 690 264 318 113 58 chr9 13882388 13882662 -110193510 + L1M5 LINE L1 4801 5089 -1057 5 690 251 247 123 0 chr9 13882905 13882978 -110193194 + L1M5 LINE L1 5380 5461 -703 5 690 1030 91 0 29 chr9 13883091 13883406 -110192766 + (CA)n Simple_repeat Simple_repeat 1 305 0 5 690 482 238 110 55 chr9 13883575 13883757 -110192415 + B3A SINE B2 2 193 -5 5 690 1914 121 21 18 chr9 13883817 13884145 -110192027 - RLTR15 LTR ERVK 0 359 31 5 690 255 362 0 47 chr9 13884169 13884317 -110191855 + RLTR31_Mur LTR ERVK 413 553 0 5 690 225 111 0 0 chr9 13884317 13884352 -110191820 - RLTR15 LTR ERVK -324 35 1 5 690 200 94 0 30 chr9 13885148 13885181 -110190991 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 5 690 386 307 19 86 chr9 13885188 13885218 -110190954 - B3A SINE B2 -2 196 170 5 690 395 19 0 19 chr9 13885218 13885271 -110190901 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 690 386 307 19 86 chr9 13885271 13885450 -110190722 - B3A SINE B2 -29 169 1 5 690 31 0 0 0 chr9 13886571 13886602 -110189570 + AT_rich Low_complexity Low_complexity 1 31 0 5 690 640 261 65 7 chr9 13886605 13886759 -110189413 + RSINE1 SINE B4 3 165 0 5 690 413 168 51 13 chr9 13886761 13886918 -110189254 + (CA)n Simple_repeat Simple_repeat 2 164 0 5 690 24 0 0 0 chr9 13886918 13886942 -110189230 + AT_rich Low_complexity Low_complexity 1 24 0 5 690 431 326 17 11 chr9 13888639 13888819 -110187353 + MIRc SINE MIR 88 268 0 5 690 532 296 34 0 chr9 13889958 13890134 -110186038 - MER3 DNA MER1_type -4 205 24 5 690 958 229 129 75 chr9 13890872 13891221 -110184951 + MTEa LTR MaLR 3 370 -9 5 690 414 263 190 50 chr9 13891228 13891428 -110184744 - MLT1H LTR MaLR -264 285 58 5 690 352 361 118 8 chr9 13891835 13892201 -110183971 - L2 LINE L2 -905 2514 2109 5 690 213 193 33 50 chr9 13893049 13893109 -110183063 + C-rich Low_complexity Low_complexity 3 61 0 5 690 258 32 0 0 chr9 13893389 13893420 -110182752 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 86 788 217 93 21 chr9 13893442 13893635 -110182537 - B3 SINE B2 -7 209 3 5 691 349 308 117 21 chr9 13893819 13894101 -110182071 + L1MA5 LINE L1 5714 6022 -278 5 691 273 197 0 0 chr9 13895723 13895789 -110180383 + GA-rich Low_complexity Low_complexity 2 67 0 5 691 506 285 139 14 chr9 13896716 13896997 -110179175 - ORR1E LTR MaLR -40 319 4 5 691 235 267 13 26 chr9 13898204 13898281 -110177891 - MLT1A1 LTR MaLR -16 392 317 5 691 591 109 60 12 chr9 13898724 13898891 -110177281 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 691 642 110 52 22 chr9 13898920 13899199 -110176973 + (TG)n Simple_repeat Simple_repeat 1 287 0 5 691 419 142 0 45 chr9 13899226 13899279 -110176893 + T-rich Low_complexity Low_complexity 56 106 0 5 691 1152 76 0 0 chr9 13899279 13899424 -110176748 - B1_Mm SINE Alu -1 146 2 5 691 419 142 0 45 chr9 13899424 13899481 -110176691 + T-rich Low_complexity Low_complexity 1 55 0 5 691 183 80 0 0 chr9 13899552 13899577 -110176595 + (T)n Simple_repeat Simple_repeat 1 25 0 5 691 38737 31 0 1 chr9 13899580 13906442 -110169730 - L1Md_T LINE L1 -1 6584 1 5 691 227 246 49 0 chr9 13907522 13907583 -110168589 - MLT1E1A LTR MaLR -17 663 600 5 691 208 121 0 0 chr9 13907844 13907877 -110168295 + (G)n Simple_repeat Simple_repeat 1 33 0 5 691 217 191 11 22 chr9 13908230 13908321 -110167851 + (TCTG)n Simple_repeat Simple_repeat 1 90 0 5 691 364 259 17 8 chr9 13909334 13909451 -110166721 + MamRep434 DNA TcMar 96 213 -213 5 691 3404 197 103 6 chr9 13910237 13911431 -110164741 - RMER1B Other Other 0 1066 6 5 691 245 274 139 66 chr9 13911511 13911648 -110164524 + MLT1A LTR MaLR 66 212 -162 5 691 261 305 69 46 chr9 13912564 13912739 -110163433 + MIRb SINE MIR 39 217 -51 5 691 492 250 28 7 chr9 13912920 13913061 -110163111 + B1F1 SINE Alu 1 144 -5 5 691 258 116 0 0 chr9 13914630 13914673 -110161499 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 691 339 149 0 0 chr9 13914801 13914875 -110161297 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 691 264 77 0 0 chr9 13915544 13915583 -110160589 + (CCA)n Simple_repeat Simple_repeat 2 40 0 5 691 577 211 29 22 chr9 13915588 13915724 -110160448 - B1_Mur2 SINE Alu -5 144 8 6 691 293 359 19 7 chr9 13916392 13916546 -110159626 - MIR SINE MIR -49 213 58 6 691 218 246 35 16 chr9 13916900 13916987 -110159185 - L2b LINE L2 -69 3318 3251 6 691 225 236 0 18 chr9 13917085 13917141 -110159031 - L2 LINE L2 -2993 426 372 6 691 898 282 62 11 chr9 13917472 13917748 -110158424 + B4 SINE B4 3 292 0 6 691 198 239 114 44 chr9 13917998 13918112 -110158060 + L2 LINE L2 1419 1540 -1879 6 691 499 302 0 0 chr9 13918652 13918778 -110157394 - ID_B1 SINE B4 0 224 99 6 691 417 317 42 0 chr9 13918778 13918794 -110157378 - B1F1 SINE Alu 0 149 2 6 691 342 0 0 0 chr9 13918885 13918923 -110157249 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 691 299 251 70 103 chr9 13918925 13919138 -110157034 + MER33 DNA MER1_type 115 320 -4 6 691 399 221 62 10 chr9 13919551 13919647 -110156525 - ID_B1 SINE B4 -10 214 114 6 691 254 206 37 148 chr9 13919647 13919659 -110156513 - PB1 SINE Alu -9 118 23 6 691 257 315 133 43 chr9 13921689 13921968 -110154204 + LTR16E1 LTR ERVL 234 537 -1 6 691 1034 252 82 37 chr9 13922015 13922369 -110153803 + ORR1D2 LTR MaLR 1 370 0 6 691 324 0 0 0 chr9 13922460 13922496 -110153676 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 691 394 308 166 46 chr9 13922496 13922737 -110153435 + MER21B LTR ERV1 41 310 -553 6 691 321 257 45 9 chr9 13923162 13923272 -110152900 + ID_B1 SINE B4 80 193 -31 6 691 240 111 0 0 chr9 13923291 13923327 -110152845 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 6 691 1056 137 0 0 chr9 13923888 13924161 -110152011 + (CCTG)n Simple_repeat Simple_repeat 1 273 0 6 691 740 248 157 39 chr9 13924452 13924784 -110151388 - RMER13A LTR ERVK -392 468 98 6 691 568 284 61 99 chr9 13924891 13925235 -110150937 + ORR1E LTR MaLR 29 359 0 6 691 1164 134 129 0 chr9 13925407 13925608 -110150564 + Lx4A LINE L1 6832 7058 0 6 691 216 97 0 0 chr9 13925614 13925645 -110150527 + (TAA)n Simple_repeat Simple_repeat 2 32 0 6 691 344 240 167 0 chr9 13925989 13926085 -110150087 + MTEb LTR MaLR 1 112 -267 6 691 546 245 21 28 chr9 13926155 13926298 -110149874 + MTEb LTR MaLR 231 372 -7 6 691 234 0 0 0 chr9 13926536 13926562 -110149610 + (A)n Simple_repeat Simple_repeat 1 26 0 6 691 1157 58 0 0 chr9 13926562 13926701 -110149471 + B1_Mus1 SINE Alu 1 139 -9 6 691 199 0 31 31 chr9 13926727 13926759 -110149413 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 691 943 264 48 42 chr9 13927489 13927504 -110148668 + B4A SINE B4 2 16 -276 6 691 3622 79 87 23 chr9 13927504 13928034 -110148138 + LTRIS2 LTR ERV1 1 564 0 6 691 943 264 48 42 chr9 13928034 13928307 -110147865 + B4A SINE B4 17 292 0 6 691 381 306 120 37 chr9 13928430 13928671 -110147501 + ORR1E LTR MaLR 88 348 -11 6 691 236 275 92 144 chr9 13928833 13928986 -110147186 + RMER15 LTR ERVL 1 145 -430 6 691 420 288 20 20 chr9 13928998 13929147 -110147025 + RMER15 LTR ERVL 279 427 -148 6 691 1372 175 52 127 chr9 13929972 13930376 -110145796 - ORR1D1 LTR MaLR -3 418 6 6 691 663 125 0 0 chr9 13930678 13930782 -110145390 + (TC)n Simple_repeat Simple_repeat 2 105 0 6 691 939 279 70 25 chr9 13930783 13931157 -110145015 - MTE2a LTR MaLR -14 405 18 6 691 243 339 136 0 chr9 13931351 13931469 -110144703 - MIRb SINE MIR -104 164 31 6 691 551 305 43 27 chr9 13934429 13934708 -110141464 + L1ME1 LINE L1 5355 5634 -2248 6 691 237 250 0 0 chr9 13935148 13935212 -110140960 + L1MEc LINE L1 639 702 -5698 6 691 459 0 0 0 chr9 13935220 13935271 -110140901 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 691 234 0 0 0 chr9 13935271 13935296 -110140876 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 691 286 325 132 11 chr9 13935632 13935912 -110140260 + L1ME1 LINE L1 5568 5881 -298 6 691 658 234 102 0 chr9 13935944 13936111 -110140061 + B3 SINE B2 33 216 0 6 691 592 263 26 13 chr9 13936161 13936315 -110139857 - RSINE1 SINE B4 -8 157 2 6 691 647 280 95 65 chr9 13936427 13936865 -110139307 - L1MDa LINE L1 -3853 2684 2218 6 691 672 235 76 71 chr9 13936865 13937062 -110139110 - B3A SINE B2 0 198 1 6 691 647 285 126 59 chr9 13937062 13937362 -110138810 - L1MDa LINE L1 -4416 2217 1900 6 691 217 330 65 19 chr9 13937521 13937629 -110138543 + MIR SINE MIR 36 148 -114 6 691 210 375 27 0 chr9 13939577 13939689 -110136483 + MIR SINE MIR 92 206 -56 6 691 500 296 127 0 chr9 13941419 13941639 -110134533 + MIR SINE MIR 12 259 -3 6 691 1817 175 22 76 chr9 13941726 13942134 -110134038 - ORR1B1 LTR MaLR -8 386 1 6 691 984 254 42 42 chr9 13942558 13942846 -110133326 - B4A SINE B4 0 292 5 6 691 24 32 0 0 chr9 13943423 13943454 -110132718 + AT_rich Low_complexity Low_complexity 1 31 0 6 691 844 273 91 65 chr9 13945558 13945899 -110130273 + ORR1E LTR MaLR 4 353 -6 6 691 451 266 54 40 chr9 13945926 13946075 -110130097 + MLT1F2 LTR MaLR 410 560 0 6 691 1303 236 150 29 chr9 13946294 13946379 -110129793 - RLTR20C LTR ERVK 0 534 446 6 691 447 19 0 0 chr9 13946379 13946431 -110129741 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 691 1303 241 153 32 chr9 13946431 13946842 -110129330 - RLTR20C LTR ERVK -94 466 7 6 691 191 246 102 34 chr9 13946847 13946906 -110129266 - MIR SINE MIR -82 126 64 6 691 1163 79 0 6 chr9 13947102 13947267 -110128905 + (TTC)n Simple_repeat Simple_repeat 2 165 0 6 691 180 0 0 0 chr9 13947273 13947293 -110128879 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 691 1286 68 0 0 chr9 13947293 13947456 -110128716 - B2_Mm2 SINE B2 -32 163 1 6 691 225 226 95 16 chr9 13947456 13947516 -110128656 - RLTR20B3 LTR ERVK -69 508 444 6 691 267 266 85 37 chr9 13947741 13947823 -110128349 - MTEa LTR MaLR -22 357 272 6 691 441 0 0 0 chr9 13949233 13949282 -110126890 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 691 234 0 0 0 chr9 13949484 13949510 -110126662 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 691 217 235 10 30 chr9 13949742 13949843 -110126329 + CT-rich Low_complexity Low_complexity 1 99 0 6 691 491 268 71 0 chr9 13950706 13950833 -110125339 - B1F SINE Alu 0 149 14 6 691 348 240 88 20 chr9 13951139 13951241 -110124931 + PB1D10 SINE Alu 1 109 -8 6 691 266 333 0 0 chr9 13951258 13951336 -110124836 + ID4 SINE ID 3 80 -3 6 691 214 199 14 29 chr9 13951352 13951495 -110124677 + (TTTA)n Simple_repeat Simple_repeat 1 140 0 6 691 567 236 49 0 chr9 13951507 13951630 -110124542 - RSINE1 SINE B4 -26 139 11 6 691 545 284 19 0 chr9 13951977 13952132 -110124040 - B4A SINE B4 -132 160 3 6 691 297 281 21 10 chr9 13953048 13953145 -110123027 + GA-rich Low_complexity Low_complexity 3 100 0 6 691 259 224 11 23 chr9 13953145 13953232 -110122940 + G-rich Low_complexity Low_complexity 4 89 0 6 691 328 250 104 43 chr9 13953706 13953749 -110122423 - Lx8 LINE L1 -444 7029 6980 6 691 315 0 0 0 chr9 13953749 13953784 -110122388 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 691 328 250 104 43 chr9 13953784 13953903 -110122269 - Lx8 LINE L1 -494 6979 6857 6 691 251 256 30 0 chr9 13954158 13954232 -110121940 + B4A SINE B4 80 157 -67 6 691 235 283 111 0 chr9 13954167 13954266 -110121906 + PB1D7 SINE Alu 6 115 -5 6 691 535 278 166 42 chr9 13955292 13955551 -110120621 - B4 SINE B4 0 292 2 6 691 474 270 15 31 chr9 13956518 13956648 -110119524 + MIR SINE MIR 81 208 -54 6 691 544 219 108 42 chr9 13956754 13956968 -110119204 + RLTR42-int LTR ERVK 1173 1400 -4122 6 691 259 240 119 81 chr9 13957215 13957410 -110118762 + RMER17C LTR ERVK 19 224 -186 6 691 207 0 0 0 chr9 13957410 13957433 -110118739 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 691 259 240 119 81 chr9 13957433 13957473 -110118699 + RMER17C LTR ERVK 225 263 -147 6 691 199 243 13 103 chr9 13957746 13957824 -110118348 + L2b LINE L2 3302 3372 -3 6 691 263 236 302 0 chr9 13958081 13958187 -110117985 + MLT1A1 LTR MaLR 268 405 -3 6 691 1186 227 40 111 chr9 13958190 13958587 -110117585 + MTE2a LTR MaLR 6 374 -5 6 691 1119 101 0 0 chr9 13958782 13958930 -110117242 + B1_Mus1 SINE Alu 1 148 0 6 691 207 0 0 0 chr9 13958944 13958967 -110117205 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 691 1699 205 99 5 chr9 13959600 13959983 -110116189 - MTD LTR MaLR 0 419 1 6 691 235 346 12 0 chr9 13960299 13960380 -110115792 - MIRc SINE MIR -117 151 70 6 691 306 0 0 0 chr9 13960411 13960445 -110115727 + (CAGTA)n Simple_repeat Simple_repeat 1 34 0 6 691 215 157 255 0 chr9 13960853 13960904 -110115268 - B4A SINE B4 -226 66 3 6 691 959 235 174 19 chr9 13960915 13961236 -110114936 + MTEb LTR MaLR 1 371 -8 6 691 357 299 42 42 chr9 13962618 13962761 -110113411 - MIRb SINE MIR -89 179 37 6 691 327 284 76 5 chr9 13962828 13962976 -110113196 + MIRb SINE MIR 22 185 -23 6 691 216 234 0 21 chr9 13963461 13963509 -110112663 - L2b LINE L2 0 3375 3329 6 691 231 61 0 0 chr9 13963823 13963856 -110112316 + (CAG)n Simple_repeat Simple_repeat 3 35 0 6 691 2008 146 7 83 chr9 13964830 13965216 -110110956 + ORR1B1 LTR MaLR 29 384 -10 6 691 676 253 66 160 chr9 13965868 13966306 -110109866 + RMER10A LTR ERVL 19 415 -27 6 691 825 241 166 91 chr9 13966419 13966738 -110109434 - ORR1E LTR MaLR -16 343 1 6 691 2796 50 9 3 chr9 13966919 13967263 -110108909 - ORR1A1 LTR MaLR 0 346 1 6 691 1056 116 6 35 chr9 13967278 13967448 -110108724 + RLTR25A LTR ERVK 388 552 -551 6 691 1582 244 93 53 chr9 13967448 13967527 -110108645 + RLTR31_Mm LTR ERVK 1 130 -431 6 691 188 35 35 0 chr9 13967527 13967556 -110108616 + (CAGAGA)n Simple_repeat Simple_repeat 1 30 0 6 691 1582 197 92 54 chr9 13967556 13967969 -110108203 + RLTR31_Mm LTR ERVK 131 561 0 6 691 2052 190 115 46 chr9 13967969 13968489 -110107683 + RLTR25B LTR ERVK 473 1028 0 7 691 812 229 275 0 chr9 13968644 13968884 -110107288 - MTE2b LTR MaLR -67 312 7 7 691 226 352 88 50 chr9 13968891 13969130 -110107042 - LTR33 LTR ERVL -4 511 264 7 691 459 244 258 38 chr9 13969518 13969727 -110106445 - MTEb LTR MaLR -116 263 9 7 691 180 0 0 0 chr9 13970403 13970423 -110105749 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 691 25 0 0 0 chr9 13970423 13970448 -110105724 + AT_rich Low_complexity Low_complexity 1 25 0 7 691 359 305 88 65 chr9 13970453 13970670 -110105502 - MT2A LTR ERVL -44 489 268 7 691 601 261 35 69 chr9 13970773 13970975 -110105197 - MTEb LTR MaLR -184 195 1 7 691 1112 89 0 0 chr9 13971179 13971325 -110104847 + B1_Mm SINE Alu 1 146 -1 7 691 477 0 0 0 chr9 13971346 13971399 -110104773 + (GAA)n Simple_repeat Simple_repeat 2 54 0 7 691 255 297 43 32 chr9 13972357 13972451 -110103721 + MIRb SINE MIR 154 248 -20 7 691 266 94 0 54 chr9 13972543 13972599 -110103573 + (AGCTG)n Simple_repeat Simple_repeat 2 54 0 7 691 13321 61 2 1 chr9 13972834 13974516 -110101656 + L1Md_F2 LINE L1 3902 5586 -297 7 691 7920 49 10 13 chr9 13974516 13975515 -110100657 + L1Md_F2 LINE L1 5587 6582 0 7 691 580 298 0 14 chr9 13975681 13975824 -110100348 + ID_B1 SINE B4 84 224 0 7 691 275 275 76 48 chr9 13975694 13975839 -110100333 - YREP_Mm Unknown Unknown -1512 300 152 7 691 650 89 9 0 chr9 13975942 13976054 -110100118 + (CA)n Simple_repeat Simple_repeat 1 113 0 7 691 423 0 0 0 chr9 13976619 13976666 -110099506 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 691 547 308 35 12 chr9 13976666 13976837 -110099335 - Lx8 LINE L1 -146 7327 7153 7 691 295 370 68 30 chr9 13976913 13977150 -110099022 - L2a LINE L2 0 3426 3181 7 691 417 39 0 0 chr9 13979086 13979137 -110097035 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 7 691 381 75 0 0 chr9 13979771 13979824 -110096348 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 691 1127 275 105 7 chr9 13980479 13980925 -110095247 + L1_Mur3 LINE L1 5377 5866 -14 7 691 324 0 0 0 chr9 13980987 13981023 -110095149 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 691 180 0 0 0 chr9 13981243 13981263 -110094909 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 691 207 0 0 0 chr9 13981497 13981520 -110094652 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 691 217 241 97 44 chr9 13981744 13981857 -110094315 - MIRc SINE MIR -35 233 115 7 691 909 254 89 24 chr9 13982070 13982299 -110093873 + B4 SINE B4 22 267 -25 7 691 282 56 0 0 chr9 13982299 13982335 -110093837 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 691 909 254 89 24 chr9 13982335 13982351 -110093821 + B4 SINE B4 268 283 -9 7 691 22 0 0 0 chr9 13982567 13982589 -110093583 + AT_rich Low_complexity Low_complexity 1 22 0 7 691 338 107 18 0 chr9 13982682 13982738 -110093434 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 7 691 333 84 40 40 chr9 13982747 13982846 -110093326 + T-rich Low_complexity Low_complexity 2 100 0 7 691 590 207 57 43 chr9 13982846 13982987 -110093185 - ID_B1 SINE B4 0 224 82 7 691 502 217 20 61 chr9 13983570 13983717 -110092455 - B1F1 SINE Alu -8 141 1 7 691 545 0 15 0 chr9 13983887 13983952 -110092220 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 691 716 259 144 5 chr9 13984853 13985055 -110091117 - MER2 DNA MER2_type -114 231 2 7 691 440 200 9 0 chr9 13985290 13985400 -110090772 + CT-rich Low_complexity Low_complexity 3 113 0 7 691 747 21 0 60 chr9 13986811 13986911 -110089261 + B1_Mm SINE Alu 54 147 0 7 691 240 312 117 18 chr9 13987351 13987462 -110088710 + MIR SINE MIR 24 145 -63 7 691 398 311 71 71 chr9 13988273 13988581 -110087591 + L1MB7 LINE L1 5856 6163 -21 7 691 436 293 41 0 chr9 13988629 13988752 -110087420 + B1F2 SINE Alu 1 128 -21 7 691 198 352 54 21 chr9 13988978 13989071 -110087101 - L2 LINE L2 -562 2857 2762 7 691 451 265 10 0 chr9 13989387 13989489 -110086683 + ID_B1 SINE B4 86 188 -36 7 691 1193 55 0 0 chr9 13989693 13989838 -110086334 + B1_Mus1 SINE Alu 2 146 -2 7 691 294 29 0 0 chr9 13989838 13989873 -110086299 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 691 985 254 34 15 chr9 13991829 13992097 -110084075 + B4A SINE B4 2 274 -18 7 691 191 36 36 0 chr9 13992955 13992983 -110083189 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 7 691 253 319 33 0 chr9 13993064 13993155 -110083017 - MIRb SINE MIR -8 260 167 7 691 279 308 202 13 chr9 13993481 13993639 -110082533 + LTR86A2 LTR ERVL 102 289 -219 7 691 642 301 60 72 chr9 13994537 13995016 -110081156 - MLT2B1 LTR ERVL 0 567 3 7 691 1137 109 0 0 chr9 13996162 13996414 -110079758 + (TG)n Simple_repeat Simple_repeat 1 252 0 7 691 405 0 0 0 chr9 13997734 13997779 -110078393 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 691 1230 103 0 0 chr9 13998033 13998262 -110077910 + (CA)n Simple_repeat Simple_repeat 1 229 0 7 691 257 331 41 75 chr9 13998275 13998422 -110077750 + MLT1J LTR MaLR 238 379 -133 7 691 336 161 0 0 chr9 13999004 13999066 -110077106 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 691 691 260 12 43 chr9 13999066 13999227 -110076945 - RSINE1 SINE B4 0 165 10 7 691 415 313 88 7 chr9 13999242 13999390 -110076782 + MTEa LTR MaLR 13 172 -207 7 691 393 323 134 80 chr9 13999390 13999653 -110076519 + MT2A LTR ERVL 13 445 -88 7 691 891 281 73 38 chr9 14000849 14001189 -110074983 + MTEa LTR MaLR 28 379 0 1 691 1239 273 66 66 chr9 14001892 14002434 -110073738 - Lx8 LINE L1 -2 7471 6930 2 691 722 157 112 0 chr9 14002501 14002635 -110073537 + B1F2 SINE Alu 1 149 0 3 691 202 232 57 14 chr9 14003013 14003083 -110073089 + MIRb SINE MIR 15 87 -181 4 691 552 233 27 85 chr9 14003360 14003548 -110072624 + Lx8 LINE L1 7008 7184 -289 5 691 231 152 0 0 chr9 14005726 14005772 -110070400 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 691 214 254 18 0 chr9 14006321 14006376 -110069796 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 691 545 214 235 14 chr9 14006410 14006623 -110069549 - B4 SINE B4 -32 260 1 8 691 21 0 0 0 chr9 14007463 14007484 -110068688 + AT_rich Low_complexity Low_complexity 1 21 0 9 691 334 346 6 25 chr9 14007622 14007779 -110068393 - MER97c DNA MER1_type? -906 184 31 1 691 271 318 102 9 chr9 14008105 14008213 -110067959 - MER5B DNA MER1_type -17 161 44 1 691 832 259 53 36 chr9 14009090 14009394 -110066778 + MTEb LTR MaLR 69 377 -2 1 691 450 101 0 0 chr9 14010903 14010972 -110065200 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 691 434 213 11 42 chr9 14011146 14011260 -110064912 - B1_Mur1 SINE Alu -1 148 18 1 691 252 0 0 0 chr9 14011271 14011299 -110064873 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1 691 270 0 0 0 chr9 14011691 14011721 -110064451 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 691 1347 91 11 0 chr9 14012766 14012952 -110063220 - B2_Mm1t SINE B2 -4 189 2 1 691 929 76 0 8 chr9 14013034 14013166 -110063006 + (TTC)n Simple_repeat Simple_repeat 3 133 0 1 691 459 321 0 0 chr9 14013167 14013335 -110062837 + CT-rich Low_complexity Low_complexity 3 170 0 1 691 473 250 39 0 chr9 14013336 14013440 -110062732 - PB1D10 SINE Alu -5 112 5 2 691 794 0 38 0 chr9 14013876 14013982 -110062190 + (GA)n Simple_repeat Simple_repeat 1 110 0 2 691 426 286 57 0 chr9 14016618 14016723 -110059449 + RSINE1 SINE B4 2 112 -53 2 691 1733 194 73 10 chr9 14018294 14018679 -110057493 - MTD LTR MaLR -14 405 1 2 691 1221 270 72 12 chr9 14018854 14019199 -110056973 + MTE2b LTR MaLR 1 366 -13 2 691 189 329 40 73 chr9 14020761 14020912 -110055260 - MIR SINE MIR 0 262 117 2 691 399 21 0 0 chr9 14021284 14021332 -110054840 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 691 225 0 0 0 chr9 14021517 14021542 -110054630 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 691 503 267 69 0 chr9 14021898 14022029 -110054143 + RSINE1 SINE B4 3 142 -23 2 691 261 57 0 0 chr9 14022030 14022065 -110054107 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 691 183 171 122 54 chr9 14022401 14022475 -110053697 + L2a LINE L2 3236 3314 -112 3 691 396 366 15 44 chr9 14022655 14022858 -110053314 + LTR16A1 LTR ERVL 15 211 -245 3 691 225 119 0 0 chr9 14023086 14023128 -110053044 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 691 540 181 207 0 chr9 14023136 14023252 -110052920 - B1_Mus1 SINE Alu -7 141 2 3 691 295 298 173 31 chr9 14023455 14023715 -110052457 + ORR1E LTR MaLR 13 309 -50 3 692 874 188 167 0 chr9 14024905 14025097 -110051075 - URR1B DNA MER1_type 0 225 2 3 692 212 256 0 0 chr9 14025210 14025253 -110050919 - ID4_ SINE ID -7 76 34 3 692 187 366 0 24 chr9 14025660 14025744 -110050428 + MIR3 SINE MIR 111 192 -16 3 692 222 172 0 33 chr9 14026327 14026387 -110049785 + T-rich Low_complexity Low_complexity 2 59 0 3 692 425 270 9 18 chr9 14028183 14028312 -110047860 - B1F SINE Alu -21 128 1 3 692 288 375 7 35 chr9 14028190 14028331 -110047841 - ID_B1 SINE B4 -25 199 63 4 692 231 288 99 25 chr9 14028608 14028729 -110047443 - L2a LINE L2 -10 3416 3287 4 692 465 260 0 0 chr9 14028856 14028960 -110047212 + PB1D10 SINE Alu 12 115 -2 4 692 664 148 9 9 chr9 14029037 14029153 -110047019 + MT2C_Mm LTR ERVL 290 405 -70 4 692 26642 144 20 10 chr9 14029341 14035284 -110040888 + L1_Mus4 LINE L1 633 6635 -1 4 692 3454 33 2 0 chr9 14036856 14037251 -110038921 - MTA_Mm LTR MaLR 0 396 1 4 692 313 281 79 36 chr9 14037334 14037474 -110038698 - L2a LINE L2 -2 3424 3279 4 692 186 43 0 0 chr9 14037489 14037512 -110038660 + (CCCCCT)n Simple_repeat Simple_repeat 5 27 0 4 692 1252 34 0 0 chr9 14038849 14038996 -110037176 + B1_Mm SINE Alu 1 147 0 4 692 206 324 140 13 chr9 14040465 14040615 -110035557 - MIRb SINE MIR -57 211 43 4 692 227 290 67 23 chr9 14042180 14042299 -110033873 - MIR SINE MIR -80 188 69 5 692 1310 107 0 0 chr9 14042423 14042601 -110033571 + L1VL4 LINE L1 230 407 -5895 5 692 7794 141 9 16 chr9 14042589 14043848 -110032324 + Lx LINE L1 4616 5870 -784 5 692 1027 52 89 0 chr9 14043848 14043983 -110032189 + B1_Mus1 SINE Alu 2 148 0 5 692 6622 128 11 51 chr9 14043983 14044806 -110031366 + Lx LINE L1 5871 6654 0 5 692 188 372 11 11 chr9 14045640 14045735 -110030437 - MIR SINE MIR -124 138 44 5 692 310 263 229 0 chr9 14047357 14047532 -110028640 + L2a LINE L2 3196 3410 -16 5 692 307 288 35 43 chr9 14048355 14048471 -110027701 - MLT1C LTR MaLR 0 467 353 5 692 269 0 0 53 chr9 14050799 14050837 -110025335 + (CCCCCA)n Simple_repeat Simple_repeat 2 37 0 5 692 198 0 0 0 chr9 14053552 14053574 -110022598 + (A)n Simple_repeat Simple_repeat 1 22 0 5 692 721 206 15 0 chr9 14053574 14053710 -110022462 + B1F SINE Alu 1 138 -11 5 692 25 0 0 0 chr9 14053917 14053942 -110022230 + AT_rich Low_complexity Low_complexity 1 25 0 6 692 464 338 0 19 chr9 14054113 14054267 -110021905 - RSINE1 SINE B4 0 165 15 6 692 365 290 62 43 chr9 14055741 14055903 -110020269 - MER5A1 DNA MER1_type -1 165 1 6 692 212 278 82 14 chr9 14056438 14056511 -110019661 + L2c LINE L2 3290 3367 -20 6 692 33078 112 19 6 chr9 14056529 14061373 -110014799 + L1_Mus1 LINE L1 215 5123 -760 6 692 3165 64 51 0 chr9 14061373 14061764 -110014408 - RLTR10A LTR ERVK 0 411 1 6 692 33078 69 17 1 chr9 14061764 14063184 -110012988 + L1_Mus1 LINE L1 5124 6565 -2 6 692 959 25 8 0 chr9 14063217 14063335 -110012837 + (GGAAA)n Simple_repeat Simple_repeat 3 121 0 6 692 216 281 78 107 chr9 14063420 14063663 -110012509 + L3 LINE CR1 4066 4301 -188 6 692 1523 161 5 0 chr9 14064108 14064332 -110011840 + URR1B DNA MER1_type 1 225 0 6 692 875 129 48 41 chr9 14064492 14064637 -110011535 + B1_Mus1 SINE Alu 3 148 0 6 692 180 229 57 0 chr9 14065626 14065661 -110010511 + L4 LINE RTE 714 750 -1279 7 692 438 20 0 0 chr9 14067858 14067909 -110008263 + (CAACT)n Simple_repeat Simple_repeat 3 53 0 7 692 1384 102 269 0 chr9 14068512 14068768 -110007404 - ORR1A4-int LTR MaLR -1638 325 1 7 692 2237 126 3 66 chr9 14068770 14069119 -110007053 - ORR1A4 LTR MaLR -2 327 1 7 692 1618 270 64 0 chr9 14069119 14069526 -110006646 - Lx8 LINE L1 -146 7327 6895 7 692 606 63 0 0 chr9 14071450 14071529 -110004643 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 7 692 513 307 66 0 chr9 14071833 14071970 -110004202 + RSINE1 SINE B4 20 165 0 7 692 264 59 0 0 chr9 14071971 14072005 -110004167 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 7 692 22 0 0 0 chr9 14072008 14072030 -110004142 + AT_rich Low_complexity Low_complexity 1 22 0 7 692 26 50 0 0 chr9 14073064 14073104 -110003068 + AT_rich Low_complexity Low_complexity 1 40 0 7 692 519 355 64 29 chr9 14074389 14074702 -110001470 + Arthur1B DNA Tip100 19 342 -883 7 692 21 57 0 0 chr9 14074711 14074746 -110001426 + AT_rich Low_complexity Low_complexity 1 35 0 8 692 261 343 102 27 chr9 14076813 14076960 -109999212 + RSINE1 SINE B4 7 164 -1 8 692 732 182 106 0 chr9 14077429 14077561 -109998611 + B1_Mur3 SINE Alu 4 149 0 8 692 661 221 70 8 chr9 14077963 14078091 -109998081 + B1_Mur2 SINE Alu 3 138 -11 8 692 3187 63 24 17 chr9 14078160 14078577 -109997595 + L1Md_F2 LINE L1 6162 6581 -1 8 692 249 108 0 0 chr9 14078761 14078798 -109997374 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 8 692 1215 55 7 0 chr9 14078798 14078943 -109997229 - B1_Mm SINE Alu 0 147 2 8 692 423 0 0 0 chr9 14079983 14080030 -109996142 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 692 255 31 0 0 chr9 14082612 14082644 -109993528 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 8 692 1120 67 0 0 chr9 14082644 14082778 -109993394 - B1_Mus1 SINE Alu -13 135 2 8 692 29 0 0 0 chr9 14082781 14082810 -109993362 + AT_rich Low_complexity Low_complexity 1 29 0 9 692 552 100 0 0 chr9 14084123 14084203 -109991969 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 9 692 467 305 84 0 chr9 14084203 14084334 -109991838 - B1F1 SINE Alu 0 149 8 9 692 21 57 0 0 chr9 14084424 14084459 -109991713 + AT_rich Low_complexity Low_complexity 1 35 0 9 692 22 0 0 0 chr9 14084653 14084675 -109991497 + AT_rich Low_complexity Low_complexity 1 22 0 9 692 21 95 0 0 chr9 14084788 14084851 -109991321 + AT_rich Low_complexity Low_complexity 1 63 0 9 692 1009 276 172 107 chr9 14086270 14086600 -109989572 + Charlie1 DNA MER1_type 1589 1998 -783 9 692 808 222 14 7 chr9 14086600 14086745 -109989427 - B1_Mur1 SINE Alu -1 148 3 9 692 1009 276 172 107 chr9 14086745 14087532 -109988640 + Charlie1 DNA MER1_type 1999 2778 -3 9 692 414 85 0 0 chr9 14088144 14088203 -109987969 + (TC)n Simple_repeat Simple_repeat 1 59 0 9 692 387 0 0 0 chr9 14088203 14088246 -109987926 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 692 231 103 0 0 chr9 14088610 14088649 -109987523 + (A)n Simple_repeat Simple_repeat 1 39 0 1 692 225 159 0 0 chr9 14088760 14088804 -109987368 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 692 1090 260 25 32 chr9 14088813 14089091 -109987081 - B4A SINE B4 -2 290 15 1 692 180 111 0 0 chr9 14089458 14089485 -109986687 + (T)n Simple_repeat Simple_repeat 1 27 0 1 692 383 266 13 0 chr9 14090474 14090553 -109985619 + ID4 SINE ID 3 82 -1 1 692 241 376 112 0 chr9 14092240 14092410 -109983762 + MER5A DNA MER1_type 1 189 0 1 692 551 236 81 25 chr9 14092994 14093155 -109983017 - B3 SINE B2 -21 195 26 1 692 266 0 29 0 chr9 14094539 14094573 -109981599 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 692 1351 34 0 0 chr9 14094578 14094725 -109981447 - B1_Mus2 SINE Alu 0 147 1 1 692 401 282 135 41 chr9 14096274 14096459 -109979713 + B4 SINE B4 2 205 -87 1 692 995 207 91 0 chr9 14096459 14096657 -109979515 + B3 SINE B2 1 216 0 1 692 401 282 135 41 chr9 14096657 14096737 -109979435 + B4 SINE B4 206 291 -1 1 692 497 43 0 91 chr9 14096843 14096920 -109979252 + L1_Mus1 LINE L1 6497 6566 -1 1 692 216 307 181 118 chr9 14097095 14097239 -109978933 - RSINE1 SINE B4 -1 164 12 1 692 549 217 35 0 chr9 14097451 14097566 -109978606 - RSINE1 SINE B4 -38 127 9 1 692 555 251 118 103 chr9 14098232 14098478 -109977694 + Charlie1 DNA MER1_type 2375 2639 -142 9 692 269 292 0 0 chr9 14098478 14098550 -109977622 - ID4_ SINE ID -11 72 1 1 692 555 251 118 103 chr9 14098550 14098693 -109977479 + Charlie1 DNA MER1_type 2640 2770 -11 9 692 1340 14 0 0 chr9 14098704 14098848 -109977324 + B1_Mus2 SINE Alu 4 147 0 1 692 214 279 35 81 chr9 14098911 14098997 -109977175 - RSINE1 SINE B4 -83 82 1 1 692 544 290 94 79 chr9 14100927 14101204 -109974968 - Tigger5 DNA MER2_type 0 2406 2126 1 692 509 214 20 0 chr9 14101297 14101395 -109974777 - B1F1 SINE Alu -45 104 5 1 692 346 288 54 54 chr9 14101395 14101444 -109974728 - ID_B1 SINE B4 -42 182 36 1 692 744 246 160 45 chr9 14101890 14102121 -109974051 - ORR1C1 LTR MaLR -8 370 93 1 692 5422 208 89 29 chr9 14102121 14102330 -109973842 - ORR1D-int LTR MaLR 0 1370 1163 1 692 564 116 0 0 chr9 14102330 14102416 -109973756 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 692 5422 208 89 29 chr9 14102416 14103498 -109972674 - ORR1D-int LTR MaLR -208 1162 1 1 692 744 246 160 45 chr9 14103498 14103598 -109972574 - ORR1C1 LTR MaLR -286 92 1 1 692 21 57 0 0 chr9 14104588 14104623 -109971549 + AT_rich Low_complexity Low_complexity 1 35 0 1 692 413 285 116 14 chr9 14105773 14105919 -109970253 + RSINE1 SINE B4 3 163 -2 1 692 1614 123 5 0 chr9 14106321 14106541 -109969631 - URR1B DNA MER1_type 0 225 5 1 692 393 240 104 44 chr9 14106775 14106910 -109969262 + B1_Mus2 SINE Alu 5 147 0 1 692 2244 86 0 60 chr9 14106952 14107286 -109968886 - ORR1A3 LTR MaLR -12 314 1 1 692 351 44 0 0 chr9 14107362 14107407 -109968765 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 692 216 86 0 0 chr9 14108432 14108467 -109967705 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 692 516 241 18 9 chr9 14108477 14108586 -109967586 - PB1D10 SINE Alu 0 117 8 1 692 282 258 0 0 chr9 14108532 14108594 -109967578 - B4A SINE B4 -146 146 85 1 692 2957 60 5 3 chr9 14109571 14109942 -109966230 + L1_Mus4 LINE L1 6265 6636 0 1 692 26 30 0 0 chr9 14110013 14110046 -109966126 + AT_rich Low_complexity Low_complexity 1 33 0 1 692 323 94 0 54 chr9 14113220 14113276 -109962896 - HAL1-3A_ME LINE L1 -831 2027 1975 1 692 205 258 15 15 chr9 14113276 14113343 -109962829 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 692 214 260 0 28 chr9 14113351 14113458 -109962714 + (TATATG)n Simple_repeat Simple_repeat 3 106 0 1 692 527 177 43 54 chr9 14114957 14115142 -109961030 - Lx9 LINE L1 0 7644 7462 1 692 320 41 0 39 chr9 14115404 14115455 -109960717 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1 692 1104 74 0 0 chr9 14115455 14115590 -109960582 - B1_Mus2 SINE Alu -11 136 2 1 692 243 0 0 0 chr9 14115938 14115965 -109960207 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 692 827 144 22 0 chr9 14116303 14116442 -109959730 - B1_Mus1 SINE Alu -1 147 6 1 692 493 285 37 21 chr9 14116442 14116493 -109959679 - ID_B1 SINE B4 -2 222 30 1 692 345 327 28 0 chr9 14117274 14117381 -109958791 + ID_B1 SINE B4 85 194 -30 1 692 866 47 23 8 chr9 14117687 14117817 -109958355 + L1Md_F2 LINE L1 6449 6580 -2 1 692 349 298 115 32 chr9 14118078 14118269 -109957903 - MTE2a LTR MaLR -35 344 1 1 692 321 317 65 0 chr9 14118269 14118392 -109957780 - MT2A LTR ERVL -402 131 1 1 692 951 46 15 0 chr9 14120005 14120135 -109956037 - B1_Mm SINE Alu -8 139 8 1 692 374 293 62 39 chr9 14121272 14121400 -109954772 + RSINE1 SINE B4 35 165 0 1 692 777 249 50 5 chr9 14121718 14121920 -109954252 - B3 SINE B2 -5 211 1 1 692 776 188 14 21 chr9 14122403 14122544 -109953628 - B1_Mus2 SINE Alu -7 140 1 1 692 426 243 19 0 chr9 14122650 14122757 -109953415 - B3 SINE B2 0 216 108 1 692 36 0 0 0 chr9 14123365 14123401 -109952771 + AT_rich Low_complexity Low_complexity 1 36 0 1 692 340 252 0 39 chr9 14123791 14123894 -109952278 + BC1_Mm scRNA scRNA 6 104 -48 1 692 940 244 101 12 chr9 14125857 14126114 -109950058 + B4 SINE B4 1 280 -12 1 692 980 67 27 0 chr9 14126141 14126291 -109949881 + (TAGA)n Simple_repeat Simple_repeat 3 156 0 1 692 316 318 122 21 chr9 14126623 14126909 -109949263 + L2a LINE L2 3097 3411 -15 1 692 1052 216 85 4 chr9 14127402 14127649 -109948523 - MTD LTR MaLR -152 267 1 1 692 6954 110 32 16 chr9 14127904 14129399 -109946773 + Lx LINE L1 5134 6654 0 1 692 210 26 50 25 chr9 14130279 14130319 -109945853 + (TTTTTG)n Simple_repeat Simple_repeat 5 45 0 1 692 862 173 22 0 chr9 14133043 14133182 -109942990 + B1F SINE Alu 1 142 -7 1 692 22 0 0 0 chr9 14134792 14134814 -109941358 + AT_rich Low_complexity Low_complexity 1 22 0 1 692 278 312 43 37 chr9 14135042 14135205 -109940967 - Tigger16a DNA Tigger -4 929 766 1 692 252 0 0 0 chr9 14136857 14136885 -109939287 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 692 27 0 0 0 chr9 14138692 14138719 -109937453 + AT_rich Low_complexity Low_complexity 1 27 0 1 692 2789 63 82 0 chr9 14139330 14139710 -109936462 - RLTR10A LTR ERVK 0 411 1 1 692 441 0 0 0 chr9 14141157 14141206 -109934966 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 692 549 30 0 0 chr9 14141206 14141273 -109934899 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 692 184 154 77 0 chr9 14142012 14142051 -109934121 + MIR SINE MIR 54 95 -167 1 692 200 339 35 26 chr9 14142494 14142609 -109933563 + L2b LINE L2 3095 3210 -165 1 692 206 215 177 0 chr9 14142722 14142801 -109933371 - MIR SINE MIR -162 100 8 1 692 369 0 0 0 chr9 14144368 14144409 -109931763 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 692 21 0 0 0 chr9 14144698 14144719 -109931453 + AT_rich Low_complexity Low_complexity 1 21 0 1 692 1046 179 124 0 chr9 14145413 14145614 -109930558 - URR1A DNA MER1_type 0 226 1 1 692 1159 41 0 51 chr9 14145900 14146056 -109930116 - B1_Mus1 SINE Alu 0 148 1 1 692 303 49 0 0 chr9 14146102 14146143 -109930029 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1 692 633 27 0 0 chr9 14146145 14146220 -109929952 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 692 267 133 0 0 chr9 14146512 14146557 -109929615 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 692 349 66 33 0 chr9 14147099 14147160 -109929012 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 692 1070 85 0 41 chr9 14147164 14147311 -109928861 - B1_Mus1 SINE Alu -7 141 1 1 692 694 130 0 0 chr9 14149596 14149704 -109926468 - RMER4A LTR ERVK -228 238 131 1 692 5080 77 26 70 chr9 14149722 14150214 -109925958 + RLTR13C2 LTR ERVK 10 500 -308 1 692 1410 60 32 0 chr9 14150214 14150399 -109925773 - B2_Mm2 SINE B2 -3 192 2 1 692 5080 77 26 70 chr9 14150399 14150741 -109925431 + RLTR13C2 LTR ERVK 501 808 0 1 692 392 178 0 0 chr9 14150741 14150802 -109925370 - RMER4A LTR ERVK -473 112 52 1 692 331 267 33 11 chr9 14150823 14150914 -109925258 - B3 SINE B2 -123 93 1 1 692 254 253 37 37 chr9 14151406 14151488 -109924684 + MLT1F1 LTR MaLR 380 461 -108 1 692 202 250 0 0 chr9 14151557 14151601 -109924571 + MIRb SINE MIR 163 206 -62 1 692 230 296 0 0 chr9 14152167 14152221 -109923951 + polypurine Low_complexity Low_complexity 6 59 0 1 692 769 86 8 8 chr9 14152332 14152461 -109923711 + (CA)n Simple_repeat Simple_repeat 1 129 0 1 692 945 145 0 0 chr9 14152480 14152692 -109923480 + (CA)n Simple_repeat Simple_repeat 1 212 0 1 692 619 247 76 20 chr9 14152990 14153188 -109922984 - B3 SINE B2 -5 211 3 1 692 415 264 18 0 chr9 14154552 14154662 -109921510 + RMER15 LTR ERVL 372 483 -92 1 693 410 82 0 0 chr9 14156565 14156626 -109919546 + ORR1A4 LTR MaLR 1 61 -268 1 693 727 237 104 90 chr9 14157750 14157836 -109918336 + B4A SINE B4 2 106 -186 1 693 387 0 0 0 chr9 14157836 14157879 -109918293 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 693 727 237 104 90 chr9 14157879 14158070 -109918102 + B4A SINE B4 107 282 -10 1 693 228 283 98 0 chr9 14158118 14158203 -109917969 + ID4_ SINE ID 8 99 -53 1 693 198 0 0 0 chr9 14159141 14159163 -109917009 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1 693 222 37 0 0 chr9 14162795 14162822 -109913350 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 693 367 316 25 62 chr9 14162844 14163006 -109913166 - B3A SINE B2 -25 191 36 1 693 919 251 27 5 chr9 14163020 14163240 -109912932 - B4 SINE B4 -66 226 2 1 693 614 189 6 0 chr9 14163507 14163682 -109912490 + (TAGA)n Simple_repeat Simple_repeat 1 176 0 1 693 846 214 69 15 chr9 14164026 14164230 -109911942 + B3 SINE B2 2 216 0 1 693 1440 76 5 0 chr9 14164230 14164414 -109911758 - B2_Mm1a SINE B2 -7 186 2 2 693 21 0 0 0 chr9 14165928 14165949 -109910223 + AT_rich Low_complexity Low_complexity 1 21 0 2 693 608 230 28 14 chr9 14166087 14166228 -109909944 + B1_Mus1 SINE Alu 6 148 0 2 693 890 254 157 6 chr9 14166351 14166688 -109909484 - MTD LTR MaLR -14 405 18 2 693 204 226 113 0 chr9 14167231 14167293 -109908879 + L4 LINE RTE 1685 1753 -276 2 693 203 257 0 41 chr9 14167718 14167791 -109908381 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 2 693 1400 215 88 0 chr9 14168353 14168815 -109907357 + RMER5 LTR ERV1 5 507 -27 2 693 692 225 0 7 chr9 14168814 14168957 -109907215 + B1_Mus2 SINE Alu 6 147 0 2 693 345 177 0 0 chr9 14168959 14169038 -109907134 + A-rich Low_complexity Low_complexity 1 79 0 2 693 22 0 0 0 chr9 14169446 14169468 -109906704 + AT_rich Low_complexity Low_complexity 1 22 0 2 693 189 0 0 0 chr9 14169766 14169787 -109906385 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2 693 246 294 82 0 chr9 14170707 14170792 -109905380 + RSINE1 SINE B4 56 147 -18 2 693 3398 28 8 0 chr9 14171802 14172195 -109903977 - MTA_Mm LTR MaLR 0 396 1 2 693 1695 166 85 25 chr9 14173349 14173702 -109902470 + ORR1D1 LTR MaLR 1 374 0 2 693 915 281 64 64 chr9 14174348 14174725 -109901447 + MTD LTR MaLR 7 383 -36 2 693 244 64 21 21 chr9 14175254 14175302 -109900870 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 2 693 325 299 74 105 chr9 14175396 14175654 -109900518 + ORR1E LTR MaLR 100 349 -10 2 693 360 0 0 0 chr9 14176436 14176476 -109899696 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 693 283 304 102 45 chr9 14176476 14176652 -109899520 - L1MA10 LINE L1 -23 6311 6126 2 693 3153 136 108 0 chr9 14176664 14177192 -109898980 + RMER4B LTR ERVK 1 585 0 2 693 659 219 295 15 chr9 14177192 14177456 -109898716 + MTE2b LTR MaLR 8 345 -34 2 693 458 322 126 24 chr9 14177850 14178451 -109897721 + L2a LINE L2 2731 3403 -23 2 693 378 57 0 0 chr9 14178724 14178777 -109897395 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 2 693 566 238 7 20 chr9 14178787 14178933 -109897239 - ID_B1 SINE B4 0 224 81 2 693 270 95 0 0 chr9 14179269 14179311 -109896861 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 693 537 196 0 0 chr9 14179542 14179644 -109896528 - RSINE1 SINE B4 -61 104 3 2 693 197 250 9 0 chr9 14180168 14180276 -109895896 + (TCCA)n Simple_repeat Simple_repeat 4 112 0 2 693 1443 48 5 0 chr9 14181285 14181471 -109894701 - L1Md_F2 LINE L1 0 6582 6396 2 693 207 0 0 0 chr9 14182066 14182089 -109894083 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 693 553 214 103 0 chr9 14182137 14182263 -109893909 + B1_Mm SINE Alu 1 139 -8 2 693 373 217 87 0 chr9 14182283 14182375 -109893797 + PB1D10 SINE Alu 1 100 -17 2 693 189 175 0 0 chr9 14183027 14183067 -109893105 + CT-rich Low_complexity Low_complexity 3 42 0 2 693 630 218 147 16 chr9 14183195 14183386 -109892786 - ID_B1 SINE B4 -8 216 1 2 693 188 277 24 24 chr9 14184714 14184799 -109891373 + MIR SINE MIR 61 145 -117 2 693 558 0 0 0 chr9 14185819 14185881 -109890291 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 2 693 258 32 0 0 chr9 14186097 14186128 -109890044 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 693 203 88 0 29 chr9 14186625 14186660 -109889512 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 693 509 281 29 59 chr9 14186759 14186929 -109889243 + B4 SINE B4 40 204 -88 2 693 40 21 0 0 chr9 14187154 14187201 -109888971 + AT_rich Low_complexity Low_complexity 1 47 0 2 693 2079 119 148 6 chr9 14188054 14188399 -109887773 + ORR1B1 LTR MaLR 1 394 0 2 693 269 250 0 42 chr9 14188442 14188513 -109887659 + GA-rich Low_complexity Low_complexity 2 69 0 2 693 474 270 14 21 chr9 14188584 14188724 -109887448 - B3 SINE B2 -11 205 67 2 693 3194 47 20 5 chr9 14189260 14189665 -109886507 + RLTR10A LTR ERVK 1 411 0 2 693 393 205 229 0 chr9 14190929 14191051 -109885121 + L1MB2 LINE L1 6021 6170 -1 2 693 1843 136 311 8 chr9 14191123 14191339 -109884833 + RLTR20A LTR ERVK 1 287 -254 2 693 306 0 0 0 chr9 14191339 14191373 -109884799 + (CGGGG)n Simple_repeat Simple_repeat 1 34 0 2 693 1843 159 60 13 chr9 14191373 14191620 -109884552 + RLTR20A LTR ERVK 288 540 -1 2 693 527 307 127 38 chr9 14191726 14191993 -109884179 + B4 SINE B4 1 291 -1 2 693 827 231 5 16 chr9 14192532 14192721 -109883451 + B3 SINE B2 30 216 0 2 693 447 19 0 0 chr9 14194486 14194538 -109881634 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 693 313 271 118 8 chr9 14195212 14195331 -109880841 + RSINE1 SINE B4 1 132 -33 2 693 354 23 0 0 chr9 14195335 14195378 -109880794 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 693 421 222 33 0 chr9 14195439 14195529 -109880643 + PB1D9 SINE Alu 5 97 -23 2 693 280 272 47 28 chr9 14195669 14195775 -109880397 + RMER15 LTR ERVL 426 533 -42 2 693 1190 180 190 3 chr9 14196225 14196520 -109879652 - ORR1B2 LTR MaLR 0 367 18 2 693 266 130 43 56 chr9 14196892 14196978 -109879194 - ORR1B2 LTR MaLR -290 84 1 2 693 533 84 24 0 chr9 14197216 14197299 -109878873 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 2 693 640 236 49 14 chr9 14197407 14197549 -109878623 - B1_Mur1 SINE Alu -1 148 2 2 693 1153 137 92 10 chr9 14198103 14198310 -109877862 - URR1B DNA MER1_type 0 225 2 2 693 2245 163 27 27 chr9 14198508 14198987 -109877185 + RMER6A LTR ERVK 278 756 0 2 693 257 313 0 57 chr9 14199151 14199239 -109876933 + L2b LINE L2 3293 3375 0 2 693 266 200 28 28 chr9 14199844 14199916 -109876256 + RMER10A LTR ERVL 344 415 -27 2 693 1211 260 124 66 chr9 14200961 14201224 -109874948 + L1MC1 LINE L1 5636 5893 -440 2 693 510 142 114 235 chr9 14201224 14201390 -109874782 + B1_Mur4 SINE Alu 2 147 -3 2 693 666 0 0 0 chr9 14201390 14201464 -109874708 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 693 1211 260 124 66 chr9 14201464 14201756 -109874416 + L1MC1 LINE L1 5894 6223 -110 2 693 656 286 5 36 chr9 14202039 14202235 -109873937 - B3 SINE B2 -6 210 21 2 693 284 235 48 29 chr9 14203271 14203376 -109872796 + ERVL-B4-int LTR ERVL 2898 3004 -2710 2 693 224 304 17 143 chr9 14203509 14203628 -109872544 - MER5B DNA MER1_type 0 178 75 2 693 231 261 29 0 chr9 14203642 14203705 -109872467 - MER5A DNA MER1_type 0 189 125 2 693 596 246 35 35 chr9 14203705 14203848 -109872324 + RSINE1 SINE B4 2 144 -21 2 693 342 0 0 0 chr9 14203851 14203889 -109872283 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 693 396 0 0 0 chr9 14203891 14203935 -109872237 + (TAG)n Simple_repeat Simple_repeat 1 44 0 2 693 214 191 0 0 chr9 14203960 14204002 -109872170 + A-rich Low_complexity Low_complexity 1 42 0 2 693 1466 74 21 0 chr9 14204012 14204201 -109871971 + B2_Mm1t SINE B2 1 193 0 2 693 252 302 58 80 chr9 14204202 14204339 -109871833 - MER5A DNA MER1_type -55 134 1 2 693 2426 89 0 52 chr9 14205110 14205216 -109870956 + ORR1A2 LTR MaLR 1 96 -231 2 693 1224 54 0 0 chr9 14205216 14205363 -109870809 + B1_Mm SINE Alu 1 147 0 2 693 2426 89 0 52 chr9 14205363 14205601 -109870571 + ORR1A2 LTR MaLR 97 327 0 2 693 432 0 0 0 chr9 14205698 14205746 -109870426 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 693 1945 171 11 6 chr9 14205788 14206133 -109870039 - RLTR33 LTR ERVK 0 678 332 2 693 2074 140 6 14 chr9 14206133 14206495 -109869677 + RLTR15 LTR ERVK 1 359 0 2 693 2257 81 12 9 chr9 14206495 14206830 -109869342 - RLTR33 LTR ERVK -342 336 1 2 693 358 236 100 11 chr9 14206980 14207070 -109869102 - PB1D10 SINE Alu -17 100 3 2 693 779 249 34 0 chr9 14207297 14207474 -109868698 - B3A SINE B2 -15 183 1 2 693 614 275 0 64 chr9 14207537 14207708 -109868464 + Lx8 LINE L1 7085 7244 -229 2 693 285 98 0 0 chr9 14207815 14207856 -109868316 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 693 328 50 0 0 chr9 14207901 14207941 -109868231 + L1VL2 LINE L1 187 226 -6109 2 693 13910 83 132 25 chr9 14207941 14210123 -109866049 + L1VL2 LINE L1 9 2522 -1093 2 693 1267 35 0 0 chr9 14210123 14210268 -109865904 + B1_Mus2 SINE Alu 2 146 -1 2 693 13910 80 16 30 chr9 14210268 14210780 -109865392 + L1VL2 LINE L1 2523 2989 -626 2 693 502 273 62 26 chr9 14211031 14211223 -109864949 - ID_B1 SINE B4 -1 223 25 2 693 2819 148 39 10 chr9 14211362 14211845 -109864327 + RLTR19 LTR ERVK 1 497 -2 2 693 736 152 46 46 chr9 14211847 14211989 -109864183 + RLTR19-int LTR ERVK 1 145 -5992 2 693 306 0 0 0 chr9 14211989 14212023 -109864149 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 693 1174 62 0 0 chr9 14212024 14212168 -109864004 - B1_Mus2 SINE Alu -3 144 1 2 693 183 139 0 0 chr9 14212354 14212390 -109863782 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2 693 4179 133 6 32 chr9 14212425 14213111 -109863061 + RLTR19-int LTR ERVK 291 958 -5179 2 693 547 29 0 0 chr9 14213114 14213184 -109862988 - B2_Mm2 SINE B2 -116 79 10 2 693 5122 112 23 9 chr9 14213184 14214251 -109861921 + Lx2 LINE L1 5275 6350 -647 2 693 36896 59 4 2 chr9 14214243 14219820 -109856352 - L1Md_F2 LINE L1 -2 6580 993 2 693 4227 102 45 22 chr9 14219821 14220460 -109855712 + Lx2 LINE L1 6338 6991 -6 2 693 4957 184 93 87 chr9 14220462 14222124 -109854048 + RLTR19-int LTR ERVK 954 2625 -3512 2 693 454 126 170 28 chr9 14222125 14222231 -109853941 + L1Md_F2 LINE L1 6462 6582 -2 2 693 313 127 0 18 chr9 14222227 14222283 -109853889 + L1_Mur1 LINE L1 4637 4691 -1195 2 693 324 0 0 0 chr9 14222283 14222319 -109853853 + (GAA)n Simple_repeat Simple_repeat 3 38 0 2 693 1560 11 0 0 chr9 14222319 14222497 -109853675 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 693 4265 141 34 47 chr9 14222506 14223323 -109852849 + RLTR19-int LTR ERVK 2639 3445 -2692 2 693 2308 155 45 36 chr9 14223317 14223759 -109852413 + RLTR19-int LTR ERVK 3413 3858 -2279 2 693 4408 16 2 12 chr9 14223760 14224258 -109851914 - MT2_Mm LTR ERVL 0 493 1 2 693 321 0 0 0 chr9 14224258 14224296 -109851876 - MERVL-int LTR ERVL 0 5485 5448 2 693 362 167 46 35 chr9 14224296 14224383 -109851789 - ORR1A3-int LTR MaLR -1323 640 553 2 693 48399 15 6 0 chr9 14224383 14229709 -109846463 - MERVL-int LTR ERVL -125 5360 1 2 693 4408 16 2 12 chr9 14229709 14230207 -109845965 - MT2_Mm LTR ERVL 0 493 1 2 693 3308 124 88 8 chr9 14230207 14230721 -109845451 + RLTR19-int LTR ERVK 3855 4409 -1728 2 693 13315 42 3 9 chr9 14230746 14232614 -109843558 - L1Md_F3 LINE L1 0 6584 4739 2 693 4689 54 0 0 chr9 14232614 14233185 -109842987 - L1Md_F2 LINE L1 -6 6576 6006 3 693 13315 54 2 18 chr9 14233185 14233707 -109842465 - L1Md_F3 LINE L1 -1145 4738 4217 2 693 3949 150 22 31 chr9 14233708 14234376 -109841796 + RLTR19-int LTR ERVK 4396 5057 -1080 2 693 834 230 0 6 chr9 14234351 14234513 -109841659 + RLTR19-int LTR ERVK 5454 5614 -523 2 693 907 236 15 10 chr9 14234696 14234901 -109841271 + RLTR19-int LTR ERVK 5847 6052 -85 2 693 320 285 79 112 chr9 14234942 14235183 -109840989 + RLTR6-int LTR ERV1 7335 7567 -211 3 693 466 112 20 128 chr9 14235137 14235239 -109840933 + RLTR19-int LTR ERVK 6045 6135 -2 2 693 972 137 77 6 chr9 14235245 14235414 -109840758 + RLTR19 LTR ERVK 7 187 -309 2 693 1275 133 22 18 chr9 14235416 14235638 -109840534 - Lx2 LINE L1 0 6997 6775 3 693 7640 100 8 6 chr9 14235633 14236692 -109839480 - Lx2 LINE L1 -349 6648 5587 3 693 5588 77 34 16 chr9 14236699 14237550 -109838622 - MusHAL1 LINE L1 -1759 953 88 3 693 1020 132 25 35 chr9 14237552 14237749 -109838423 - B2_Mm2 SINE B2 0 195 1 3 693 3167 160 32 15 chr9 14237749 14238320 -109837852 + RLTR26 LTR ERVK 62 642 0 3 693 5383 88 22 3 chr9 14238325 14239085 -109837087 - L1VL4 LINE L1 -4561 1325 548 3 693 2026 142 9 6 chr9 14239087 14239419 -109836753 + RLTR19 LTR ERVK 167 499 0 2 693 327 312 0 43 chr9 14239525 14239642 -109836530 + ID_B1 SINE B4 112 223 -1 3 693 833 152 27 20 chr9 14240490 14240638 -109835534 - B1_Mur4 SINE Alu -1 149 1 3 693 293 135 19 19 chr9 14240793 14240846 -109835326 + RMER17C LTR ERVK 1 53 -357 3 693 3509 112 52 31 chr9 14241387 14241942 -109834230 - RMER2 LTR ERV1 0 567 1 3 693 1099 304 14 26 chr9 14242369 14242827 -109833345 - MuRRS4-int LTR ERV1 -1088 3975 3601 3 693 261 379 45 26 chr9 14243836 14244145 -109832027 - MuRRS4-int LTR ERV1 -3448 1615 1301 3 693 3476 103 65 15 chr9 14245517 14246057 -109830115 - RMER2 LTR ERV1 0 567 1 3 693 283 277 0 11 chr9 14246430 14246525 -109829647 - RLTR19-int LTR ERVK -864 4542 4449 3 693 2275 159 20 23 chr9 14246716 14247108 -109829064 - RLTR19-int LTR ERVK -1734 4403 4013 3 693 288 77 0 0 chr9 14247108 14247147 -109829025 + (CAA)n Simple_repeat Simple_repeat 2 40 0 3 693 1836 231 58 34 chr9 14247185 14247688 -109828484 - RLTR17 LTR ERVK -74 618 104 3 693 233 243 27 0 chr9 14247722 14247796 -109828376 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 3 693 22 0 0 0 chr9 14247892 14247914 -109828258 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 204 122 0 0 chr9 14248463 14248504 -109827668 + (T)n Simple_repeat Simple_repeat 1 41 0 3 693 1179 62 0 7 chr9 14248516 14248662 -109827510 - B1_Mm SINE Alu -1 146 2 3 693 591 126 0 0 chr9 14248715 14248810 -109827362 + (TC)n Simple_repeat Simple_repeat 1 95 0 3 693 204 40 0 0 chr9 14248815 14248840 -109827332 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 3 693 1065 90 0 0 chr9 14249397 14249574 -109826598 + (TC)n Simple_repeat Simple_repeat 2 178 0 3 693 621 39 59 0 chr9 14249574 14249676 -109826496 + (TCTCTG)n Simple_repeat Simple_repeat 2 109 0 3 693 1149 83 0 0 chr9 14249677 14249857 -109826315 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 693 22 35 0 0 chr9 14250081 14250110 -109826062 + AT_rich Low_complexity Low_complexity 1 29 0 3 693 26 30 0 0 chr9 14250147 14250180 -109825992 + AT_rich Low_complexity Low_complexity 1 33 0 3 693 497 319 0 0 chr9 14250180 14250321 -109825851 + ID_B1 SINE B4 78 218 -6 3 693 3078 205 58 17 chr9 14250472 14251217 -109824955 - RMER13B LTR ERVK -5 903 1 3 693 1204 55 0 0 chr9 14251229 14251375 -109824797 - B1_Mm SINE Alu 0 147 2 3 693 210 37 0 0 chr9 14251938 14251965 -109824207 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 693 338 209 11 55 chr9 14251969 14252060 -109824112 - B1_Mur3 SINE Alu -13 136 50 3 693 240 213 0 0 chr9 14252094 14252155 -109824017 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 693 1606 261 61 97 chr9 14256927 14257000 -109819172 + RLTR14-int LTR ERV1 613 679 -4638 3 693 491 0 0 17 chr9 14257000 14257060 -109819112 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 3 693 1033 74 7 0 chr9 14257061 14257196 -109818976 - B1_Mus1 SINE Alu -12 136 1 3 693 1606 261 61 97 chr9 14257196 14257820 -109818352 + RLTR14-int LTR ERV1 680 1287 -4030 3 693 1077 251 19 50 chr9 14257999 14258318 -109817854 + RLTR14-int LTR ERV1 1743 2051 -3266 3 693 2863 214 128 61 chr9 14258331 14259243 -109816929 + RLTR14-int LTR ERV1 2111 3083 -2234 3 693 1017 214 119 17 chr9 14259243 14259537 -109816635 + RLTR14-int LTR ERV1 3219 3542 -1775 3 693 334 285 30 8 chr9 14259541 14259672 -109816500 + RLTR14 LTR ERV1 246 379 -3 3 693 632 221 21 35 chr9 14260410 14260555 -109815617 + B1_Mus2 SINE Alu 2 144 -3 3 693 231 245 0 0 chr9 14260692 14260741 -109815431 + B1_Mus2 SINE Alu 1 49 -98 3 693 508 153 8 8 chr9 14260747 14260866 -109815306 + GA-rich Low_complexity Low_complexity 2 120 0 3 693 1681 194 122 23 chr9 14261620 14262226 -109813946 + RLTR14-int LTR ERV1 4511 5176 -141 3 693 992 210 87 4 chr9 14262268 14262498 -109813674 + RLTR14 LTR ERV1 10 258 -124 3 693 7038 50 1 1 chr9 14262498 14263346 -109812826 + L1_Mm LINE L1 4738 5586 -297 3 693 8276 32 18 3 chr9 14263346 14264327 -109811845 + L1Md_F2 LINE L1 5587 6582 0 3 693 705 219 0 0 chr9 14264341 14264478 -109811694 + RLTR14 LTR ERV1 246 382 0 3 693 406 316 19 19 chr9 14264801 14264956 -109811216 + ID_B1 SINE B4 56 210 -14 3 693 583 182 9 9 chr9 14265293 14265404 -109810768 + ID_B1 SINE B4 82 192 -32 3 693 600 222 8 0 chr9 14265442 14265559 -109810613 - PB1D9 SINE Alu -2 118 1 3 693 403 240 139 0 chr9 14265999 14266128 -109810044 - B1_Mur2 SINE Alu 0 149 3 3 693 294 29 0 0 chr9 14266177 14266212 -109809960 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 693 410 288 18 30 chr9 14266631 14266796 -109809376 + RSINE1 SINE B4 3 165 0 3 693 722 285 55 18 chr9 14271766 14272038 -109804134 + B4A SINE B4 2 283 -9 3 693 366 156 0 0 chr9 14272079 14272143 -109804029 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 693 565 222 36 15 chr9 14272815 14272952 -109803220 + RSINE1 SINE B4 5 144 -21 3 693 459 0 0 0 chr9 14273005 14273056 -109803116 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 693 267 282 109 17 chr9 14274808 14274927 -109801245 - HAL1 LINE L1 -2193 314 185 3 693 23699 109 27 19 chr9 14275110 14281038 -109795134 - L1_Mus2 LINE L1 -1 6565 535 3 693 311 329 106 31 chr9 14282274 14282500 -109793672 - HAL1 LINE L1 -582 1925 1683 3 693 239 89 0 27 chr9 14283562 14283613 -109792559 - B1_Mm SINE Alu -5 145 97 3 693 231 194 0 0 chr9 14283612 14283648 -109792524 - PB1D9 SINE Alu -82 38 3 3 693 294 118 211 42 chr9 14283726 14283797 -109792375 - B1_Mur4 SINE Alu -2 148 66 3 693 221 345 109 0 chr9 14283828 14283938 -109792234 + B4A SINE B4 73 194 -98 3 693 425 267 59 7 chr9 14283846 14283982 -109792190 + B1F SINE Alu 6 148 -1 3 693 1379 259 134 26 chr9 14284175 14284800 -109791372 - L1MB8 LINE L1 -159 6019 5327 3 693 249 245 0 0 chr9 14284901 14284950 -109791222 - B1F1 SINE Alu -99 50 2 3 693 438 282 99 48 chr9 14284953 14285225 -109790947 - L1MB8 LINE L1 -989 5157 4872 3 693 1196 48 7 0 chr9 14286022 14286168 -109790004 - B1_Mm SINE Alu 0 147 1 3 86 1354 270 168 46 chr9 14286211 14287240 -109788932 - Lx7 LINE L1 -1792 5904 4703 3 694 351 0 0 0 chr9 14287666 14287705 -109788467 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 694 456 273 151 76 chr9 14288090 14289169 -109787003 + L1M5 LINE L1 2670 3762 -2384 3 694 1428 298 128 12 chr9 14289293 14289895 -109786277 + Lx8 LINE L1 6801 7472 -1 3 694 541 306 112 61 chr9 14289950 14290439 -109785733 + L1M5 LINE L1 4000 4508 -1638 3 694 4052 121 24 6 chr9 14290439 14291069 -109785103 + Lx2A1 LINE L1 6368 7008 0 3 694 1458 69 26 0 chr9 14291074 14291263 -109784909 + B2_Mm2 SINE B2 2 195 0 3 694 541 306 112 61 chr9 14291263 14291404 -109784768 + L1M5 LINE L1 4514 4668 -1478 3 694 180 0 0 0 chr9 14292101 14292121 -109784051 + (T)n Simple_repeat Simple_repeat 1 20 0 3 694 3206 63 2 2 chr9 14293144 14293540 -109782632 - MTA_Mm LTR MaLR 0 396 1 3 694 7058 93 19 81 chr9 14293540 14294708 -109781464 - MTA_Mm-int LTR MaLR 0 1098 4 3 694 33674 112 50 20 chr9 14294708 14295862 -109780310 + MERVL_2A-int LTR ERVL 494 1667 -4094 3 694 1201 74 0 0 chr9 14295862 14296010 -109780162 - B1_Mus1 SINE Alu 0 148 1 3 694 33674 112 50 20 chr9 14296010 14299822 -109776350 + MERVL_2A-int LTR ERVL 1668 5610 -151 3 694 315 178 13 40 chr9 14299838 14299914 -109776258 + ORR1A3-int LTR MaLR 567 640 -1323 3 694 3666 70 6 6 chr9 14299955 14300430 -109775742 + MT2C_Mm LTR ERVL 1 475 0 3 694 210 71 0 0 chr9 14300434 14300462 -109775710 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 3 694 633 135 19 0 chr9 14300497 14300601 -109775571 - B1_Mur4 SINE Alu -1 149 44 3 694 628 284 41 0 chr9 14300615 14300784 -109775388 - B3A SINE B2 -22 176 1 3 694 200 111 43 22 chr9 14300836 14300882 -109775290 + T-rich Low_complexity Low_complexity 2 48 0 3 694 879 35 0 0 chr9 14300882 14300998 -109775174 - B1_Mus2 SINE Alu 0 147 32 3 694 792 187 0 7 chr9 14301099 14301239 -109774933 - B1_Mm SINE Alu -8 139 1 3 694 245 260 0 0 chr9 14301266 14301316 -109774856 - PB1D7 SINE Alu -70 50 1 3 694 662 248 171 12 chr9 14301803 14302048 -109774124 + B4A SINE B4 2 285 -7 3 694 859 278 103 109 chr9 14302117 14302650 -109773522 + MT2A LTR ERVL 4 533 0 3 694 217 349 75 8 chr9 14303012 14303145 -109773027 - L2a LINE L2 -2 3424 3283 3 694 231 352 112 6 chr9 14303195 14303355 -109772817 - MIR SINE MIR -45 217 41 3 694 231 220 12 51 chr9 14303648 14303715 -109772457 + PB1D10 SINE Alu 63 149 0 3 694 180 0 0 0 chr9 14304967 14304987 -109771185 + (A)n Simple_repeat Simple_repeat 1 20 0 3 694 371 291 5 11 chr9 14305519 14305622 -109770550 - PB1D10 SINE Alu -14 106 1 3 694 225 293 109 20 chr9 14305534 14305635 -109770537 - B4 SINE B4 -113 179 70 3 694 46 33 0 0 chr9 14305911 14305971 -109770201 + AT_rich Low_complexity Low_complexity 1 60 0 3 694 1096 106 59 0 chr9 14306842 14307012 -109769160 + B2_Mm2 SINE B2 2 181 -14 3 694 925 120 20 20 chr9 14307807 14307960 -109768212 + B2_Mm2 SINE B2 2 154 -41 3 694 231 36 0 0 chr9 14307961 14307989 -109768183 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 694 180 111 0 0 chr9 14308162 14308189 -109767983 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 694 212 193 16 81 chr9 14308650 14308712 -109767460 - B1F1 SINE Alu -56 93 36 3 694 1252 160 27 0 chr9 14309603 14309822 -109766350 - URR1B DNA MER1_type 0 225 1 3 694 243 297 2 42 chr9 14309902 14309990 -109766182 + MIRm SINE MIR 81 166 -96 3 694 281 185 123 0 chr9 14309992 14310057 -109766115 + PB1D7 SINE Alu 41 113 -7 3 694 1146 198 25 0 chr9 14310250 14310452 -109765720 + B3 SINE B2 4 210 -6 3 694 342 347 73 0 chr9 14310797 14310921 -109765251 - RSINE1 SINE B4 -31 134 2 4 694 326 310 92 0 chr9 14311501 14311588 -109764584 + RSINE1 SINE B4 71 165 0 4 694 414 179 0 12 chr9 14312105 14312190 -109763982 + ID_B1 SINE B4 141 224 0 4 694 254 200 104 26 chr9 14312657 14312734 -109763438 - MER68 LTR ERVL -1 562 480 4 694 182 264 19 0 chr9 14313241 14313294 -109762878 + L2 LINE L2 2849 2902 -517 4 694 369 83 330 18 chr9 14315088 14315197 -109760975 - B2_Mm2 SINE B2 -6 189 47 4 694 783 122 30 0 chr9 14315210 14315341 -109760831 - B2_Mm2 SINE B2 -14 181 47 4 694 1196 120 11 0 chr9 14315354 14315529 -109760643 - B2_Mm1t SINE B2 -14 179 3 4 694 1181 34 0 40 chr9 14315998 14316012 -109760160 - B1_Mm SINE Alu 0 147 139 4 694 387 0 0 0 chr9 14316012 14316055 -109760117 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 694 1181 34 0 40 chr9 14316055 14316192 -109759980 - B1_Mm SINE Alu -9 138 2 4 694 1202 68 0 0 chr9 14316278 14316425 -109759747 - B1_Mus2 SINE Alu 0 147 1 4 694 434 198 214 2 chr9 14317650 14317803 -109758369 - B3 SINE B2 -22 173 2 4 694 289 267 142 32 chr9 14318077 14318232 -109757940 - RLTR23 LTR ERV1 0 430 259 4 694 264 329 66 59 chr9 14318591 14318862 -109757310 - RLTR6-int LTR ERV1 -103 7675 7403 4 694 1168 280 21 35 chr9 14320156 14320502 -109755670 + MuLV-int LTR ERV1 4825 5167 -2439 4 694 3421 25 8 0 chr9 14320502 14320895 -109755277 + MTA_Mm LTR MaLR 1 396 0 4 694 1168 280 21 35 chr9 14320895 14320981 -109755191 + MuLV-int LTR ERV1 5168 5251 -2355 4 694 1237 41 0 0 chr9 14320984 14321131 -109755041 + B1_Mm SINE Alu 1 147 0 4 694 254 240 46 39 chr9 14321332 14321355 -109754817 + MuLV-int LTR ERV1 5502 5555 -2051 4 694 253 333 30 0 chr9 14321355 14321454 -109754718 + RLTR19-int LTR ERVK 4371 4472 -1665 4 694 273 292 65 71 chr9 14321639 14321794 -109754378 + RSINE1 SINE B4 4 157 -8 4 694 212 348 52 31 chr9 14323231 14323424 -109752748 - MIRb SINE MIR -1 267 71 4 694 318 325 44 25 chr9 14324016 14324174 -109751998 + MER92C LTR ERV1 269 429 -125 4 694 484 307 106 40 chr9 14324345 14324813 -109751359 - MLT2B1 LTR ERVL 0 520 3 4 694 402 318 20 13 chr9 14325176 14325329 -109750843 + LTR40b LTR ERVL 74 227 -235 4 694 285 234 0 0 chr9 14325430 14325494 -109750678 + LTR40b LTR ERVL 373 436 -26 4 694 343 301 113 39 chr9 14325707 14325990 -109750182 - RMER5 LTR ERV1 -66 468 165 4 694 576 292 38 14 chr9 14326447 14326659 -109749513 + MTEa LTR MaLR 1 217 -162 4 694 288 0 0 0 chr9 14327608 14327640 -109748532 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 694 331 231 314 0 chr9 14327640 14327761 -109748411 - B3 SINE B2 -54 162 4 4 694 474 18 0 0 chr9 14327821 14327876 -109748296 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 694 784 157 14 21 chr9 14329015 14329158 -109747014 - B1_Mur2 SINE Alu -6 143 2 4 694 1639 166 38 14 chr9 14330944 14331237 -109744935 + RLTR41 LTR ERV1 147 446 0 4 694 307 292 56 49 chr9 14331880 14332024 -109744148 + MuRRS4-int LTR ERV1 674 818 -6783 4 694 572 295 48 16 chr9 14332471 14332752 -109743420 + MuRRS4-int LTR ERV1 1356 1754 -6024 4 694 297 280 32 0 chr9 14332771 14332896 -109743276 + MuRRS4-int LTR ERV1 1838 1966 -5812 4 694 510 294 78 63 chr9 14332866 14333415 -109742757 + MuRRS4-int LTR ERV1 1837 2423 -5355 4 694 1734 320 53 44 chr9 14333491 14335038 -109741134 + MuRRS4-int LTR ERV1 2757 5689 -2089 4 694 548 302 43 8 chr9 14335566 14335800 -109740372 + MuRRS4-int LTR ERV1 7447 7688 -90 4 694 351 0 0 0 chr9 14335911 14335950 -109740222 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 694 1731 169 37 17 chr9 14335978 14336273 -109739899 + RLTR41 LTR ERV1 146 446 0 4 694 208 320 129 16 chr9 14336585 14336709 -109739463 + MIR3 SINE MIR 13 150 -58 4 694 504 273 118 78 chr9 14336959 14337213 -109738959 + LTR40c LTR ERVL 31 295 -167 4 694 204 345 0 22 chr9 14338128 14338220 -109737952 - MIR SINE MIR -88 174 85 4 694 268 277 158 21 chr9 14339573 14339742 -109736430 - MIRc SINE MIR -25 251 51 4 694 3303 78 31 2 chr9 14340056 14340504 -109735668 + L1_Mus2 LINE L1 6106 6566 0 4 694 1141 179 9 70 chr9 14340596 14340824 -109735348 - B3 SINE B2 0 216 3 4 694 2390 92 140 6 chr9 14341280 14341629 -109734543 + MTB LTR MaLR 1 396 0 4 694 7752 73 16 59 chr9 14341629 14342777 -109733395 + MTB-int LTR MaLR 1 1098 0 4 694 2907 81 42 3 chr9 14342777 14343162 -109733010 + MTB LTR MaLR 1 400 0 4 694 424 294 86 37 chr9 14343274 14343461 -109732711 + ORR1E LTR MaLR 164 359 0 4 694 283 385 15 7 chr9 14343501 14343637 -109732535 + MTE-int LTR MaLR 234 370 -1210 4 694 422 320 139 35 chr9 14343655 14343914 -109732258 + MTE-int LTR MaLR 331 616 -964 4 694 511 248 0 42 chr9 14344726 14344844 -109731328 - B3A SINE B2 -81 117 5 4 694 232 226 208 41 chr9 14345627 14345752 -109730420 + MIRc SINE MIR 42 189 -87 4 694 699 229 0 0 chr9 14347280 14347455 -109728717 + (TG)n Simple_repeat Simple_repeat 1 175 0 4 694 596 179 90 26 chr9 14347473 14347628 -109728544 - RSINE1 SINE B4 0 165 1 4 694 538 49 24 12 chr9 14347858 14347940 -109728232 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 4 694 25 0 0 0 chr9 14349392 14349417 -109726755 + AT_rich Low_complexity Low_complexity 1 25 0 4 694 202 194 0 0 chr9 14350595 14350631 -109725541 + CT-rich Low_complexity Low_complexity 1 36 0 4 694 441 0 0 0 chr9 14351795 14351844 -109724328 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 694 522 290 31 57 chr9 14352545 14352739 -109723433 + MTEb LTR MaLR 151 339 -40 4 694 715 284 156 18 chr9 14356545 14356885 -109719287 + Lx8 LINE L1 6840 7226 -247 4 694 328 200 17 0 chr9 14356885 14357000 -109719172 + GA-rich Low_complexity Low_complexity 2 118 0 4 694 605 208 0 6 chr9 14357014 14357193 -109718979 + GA-rich Low_complexity Low_complexity 2 179 0 4 694 339 285 81 27 chr9 14358524 14358672 -109717500 + RMER15 LTR ERVL 413 568 -7 4 694 411 100 0 0 chr9 14358942 14359012 -109717160 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 4 694 189 94 0 0 chr9 14359012 14359044 -109717128 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 694 511 312 117 62 chr9 14359222 14359478 -109716694 + B4A SINE B4 2 271 -21 4 694 216 209 145 29 chr9 14359896 14359965 -109716207 - PB1D7 SINE Alu 0 120 44 4 694 205 347 94 34 chr9 14360407 14360556 -109715616 - MIR SINE MIR -71 191 34 4 694 326 310 114 62 chr9 14364684 14364894 -109711278 - MIRb SINE MIR -14 254 34 4 694 616 194 37 0 chr9 14364996 14365104 -109711068 + B3 SINE B2 2 113 -103 4 694 25 31 0 0 chr9 14365115 14365147 -109711025 + AT_rich Low_complexity Low_complexity 1 32 0 4 694 256 272 165 171 chr9 14365320 14365484 -109710688 + RSINE1 SINE B4 3 165 0 4 694 246 206 30 45 chr9 14366897 14366963 -109709209 + ID4 SINE ID 17 81 -2 4 694 325 321 0 60 chr9 14367556 14367672 -109708500 + PB1D10 SINE Alu 1 109 -8 4 694 1307 216 132 48 chr9 14367835 14368212 -109707960 + MTD LTR MaLR 1 405 -14 4 694 254 308 0 0 chr9 14369281 14369333 -109706839 + Cheshire DNA MER1_type 3 54 -2366 4 694 255 341 0 0 chr9 14369342 14369424 -109706748 + Cheshire DNA MER1_type 179 260 -2160 4 694 950 129 7 0 chr9 14370611 14370758 -109705414 + B2_Mm2 SINE B2 2 149 -46 4 694 339 25 0 0 chr9 14370880 14370920 -109705252 + (CATA)n Simple_repeat Simple_repeat 2 41 0 4 694 351 0 0 0 chr9 14370920 14370959 -109705213 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 4 694 207 0 0 0 chr9 14371320 14371343 -109704829 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 694 264 77 0 0 chr9 14371343 14371381 -109704791 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 694 813 270 143 21 chr9 14371907 14372187 -109703985 + ORR1E LTR MaLR 44 357 -2 4 694 881 174 7 0 chr9 14372600 14372744 -109703428 + B1_Mus1 SINE Alu 4 148 0 4 694 535 318 108 32 chr9 14372791 14373086 -109703086 - Lx8 LINE L1 -854 6842 6509 4 694 1033 255 70 28 chr9 14373086 14373441 -109702731 - ORR1D2 LTR MaLR 0 370 1 4 694 535 317 93 31 chr9 14373441 14373481 -109702691 - Lx8 LINE L1 -965 6508 6469 4 694 2259 144 82 5 chr9 14374197 14374588 -109701584 - MTC LTR MaLR 0 421 1 4 694 559 30 0 0 chr9 14374855 14374922 -109701250 - B1_Mur4 SINE Alu -10 140 74 4 694 253 57 55 36 chr9 14374922 14374977 -109701195 + (TTTTTG)n Simple_repeat Simple_repeat 3 58 0 4 694 587 254 149 65 chr9 14375590 14375852 -109700320 + MTEa LTR MaLR 79 370 0 4 694 979 211 34 43 chr9 14376321 14376554 -109699618 + B4A SINE B4 1 231 -61 4 694 233 272 58 149 chr9 14376612 14376733 -109699439 + PB1 SINE Alu 9 118 -9 4 694 1296 84 0 0 chr9 14376777 14377041 -109699131 + (CA)n Simple_repeat Simple_repeat 1 264 0 4 694 796 229 72 0 chr9 14377622 14377775 -109698397 - B3A SINE B2 -34 164 1 4 694 480 35 0 0 chr9 14378318 14378376 -109697796 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 694 244 247 149 23 chr9 14378381 14378468 -109697704 + RLTR20D LTR ERVK 32 135 -433 4 694 230 296 11 0 chr9 14378800 14378888 -109697284 + L1M1 LINE L1 5818 5906 -397 4 694 198 0 0 0 chr9 14379050 14379072 -109697100 + (A)n Simple_repeat Simple_repeat 1 22 0 4 694 241 215 14 58 chr9 14380997 14381010 -109695162 + B4 SINE B4 79 140 -148 4 694 270 120 19 39 chr9 14381010 14381062 -109695110 + B1F2 SINE Alu 7 57 -92 4 694 384 0 0 162 chr9 14381067 14381271 -109694901 + (CAGAG)n Simple_repeat Simple_repeat 5 175 0 4 694 489 168 9 70 chr9 14381274 14381389 -109694783 + B1F SINE Alu 42 149 0 4 694 3415 60 108 8 chr9 14381628 14382100 -109694072 + MURVY-LTR LTR ERV1 1 519 0 4 694 460 306 96 7 chr9 14383668 14383803 -109692369 + RSINE1 SINE B4 4 150 -15 4 694 342 0 0 0 chr9 14383830 14383868 -109692304 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 694 783 269 107 16 chr9 14385298 14385551 -109690621 - B4A SINE B4 -2 290 15 4 694 932 220 0 27 chr9 14385643 14385830 -109690342 + B3A SINE B2 1 182 -16 4 694 218 196 19 19 chr9 14385867 14385971 -109690201 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 694 218 81 27 0 chr9 14385996 14386033 -109690139 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 694 3418 40 2 5 chr9 14386052 14386449 -109689723 + MTA_Mm LTR MaLR 1 396 0 4 694 1309 88 11 21 chr9 14386778 14386965 -109689207 - B2_Mm1t SINE B2 -7 186 2 4 694 998 140 0 0 chr9 14386970 14387120 -109689052 - B1_Mur4 SINE Alu 0 150 1 5 694 334 350 86 0 chr9 14387174 14387291 -109688881 - RSINE1 SINE B4 0 165 39 5 694 3679 2 2 0 chr9 14387605 14388025 -109688147 - L1Md_A LINE L1 -131 5752 5332 5 694 7672 4 0 0 chr9 14388025 14388858 -109687314 + L1Md_A LINE L1 5750 6582 0 5 694 191 167 0 23 chr9 14389109 14389152 -109687020 + CT-rich Low_complexity Low_complexity 2 43 0 5 694 1155 257 64 22 chr9 14389201 14389559 -109686613 + MTEa LTR MaLR 5 377 -2 5 694 302 313 8 25 chr9 14389943 14390061 -109686111 + PB1 SINE Alu 5 120 -7 5 694 426 138 45 9 chr9 14390423 14390533 -109685639 + CT-rich Low_complexity Low_complexity 2 115 0 5 694 650 236 27 34 chr9 14390540 14390702 -109685470 - ID_B1 SINE B4 -46 246 82 5 694 2606 131 32 12 chr9 14391139 14391550 -109684622 - MTC LTR MaLR -2 419 1 5 694 297 0 0 0 chr9 14391575 14391608 -109684564 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 694 992 226 38 14 chr9 14392539 14392750 -109683422 - B3 SINE B2 0 216 1 5 694 930 236 25 20 chr9 14394376 14394579 -109681593 + B3 SINE B2 9 212 -4 5 694 838 246 137 92 chr9 14394761 14395119 -109681053 + MTEa LTR MaLR 1 374 -5 5 694 452 83 0 53 chr9 14395852 14395928 -109680244 - B1_Mur3 SINE Alu -1 148 77 5 694 297 0 0 0 chr9 14396384 14396417 -109679755 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 694 357 286 18 45 chr9 14396459 14396569 -109679603 + PB1D10 SINE Alu 1 107 -10 5 694 928 242 62 69 chr9 14396648 14396936 -109679236 + B4 SINE B4 3 288 -4 5 694 423 56 0 0 chr9 14397691 14397745 -109678427 + (CTG)n Simple_repeat Simple_repeat 1 54 0 5 694 253 137 118 0 chr9 14399103 14399154 -109677018 + B1_Mur4 SINE Alu 94 150 0 5 694 391 230 56 22 chr9 14399836 14399925 -109676247 - B4 SINE B4 0 292 201 5 694 550 205 64 32 chr9 14400138 14400294 -109675878 - Lx8 LINE L1 -347 7126 6966 5 694 471 216 179 20 chr9 14400309 14400460 -109675712 - B4A SINE B4 -64 228 54 5 694 228 250 0 45 chr9 14400459 14400526 -109675646 - MER44D DNA MER2_type -24 681 618 5 694 375 23 0 0 chr9 14400546 14400590 -109675582 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 694 395 348 17 0 chr9 14400715 14400830 -109675342 - MER44D DNA MER2_type -587 118 2 5 694 405 0 0 0 chr9 14401603 14401648 -109674524 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 694 563 225 0 6 chr9 14402502 14402833 -109673339 + (TG)n Simple_repeat Simple_repeat 1 328 0 5 694 228 268 0 0 chr9 14402864 14402946 -109673226 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 694 326 203 27 68 chr9 14402946 14403020 -109673152 - ID4_ SINE ID -4 79 9 5 694 249 321 42 42 chr9 14403042 14403185 -109672987 - B1F SINE Alu -5 144 2 5 694 236 271 0 0 chr9 14403769 14403831 -109672341 + (TGGA)n Simple_repeat Simple_repeat 1 62 0 5 694 273 57 0 0 chr9 14404209 14404244 -109671928 + (TCC)n Simple_repeat Simple_repeat 2 36 0 5 694 471 35 0 0 chr9 14405660 14405717 -109670455 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 694 287 250 62 0 chr9 14406849 14406977 -109669195 + (CA)n Simple_repeat Simple_repeat 2 137 0 5 694 216 169 129 48 chr9 14407335 14407397 -109668775 - L2c LINE L2 -25 3362 3296 5 694 391 194 53 21 chr9 14407777 14407872 -109668300 + MTE2a LTR MaLR 282 379 0 5 694 248 286 43 106 chr9 14407872 14407980 -109668192 - Charlie1a DNA MER1_type -866 589 491 5 694 904 235 26 16 chr9 14408001 14408191 -109667981 + B3 SINE B2 14 205 -11 5 694 378 332 118 60 chr9 14408267 14408616 -109667556 - Charlie1a DNA MER1_type -1084 371 3 5 694 528 16 0 0 chr9 14409380 14409441 -109666731 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 694 225 328 33 0 chr9 14409700 14409761 -109666411 + ID4 SINE ID 21 83 0 5 694 301 269 90 0 chr9 14409770 14409837 -109666335 + B4A SINE B4 216 288 -4 5 694 1046 261 82 50 chr9 14409981 14410323 -109665849 - MTE2a LTR MaLR -9 370 18 5 694 1224 282 50 15 chr9 14410426 14410764 -109665408 - ORR1E LTR MaLR -2 357 8 5 694 180 0 0 0 chr9 14410911 14410931 -109665241 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 694 593 281 85 50 chr9 14410942 14411223 -109664949 + B4A SINE B4 2 292 0 5 694 450 0 0 0 chr9 14411705 14411755 -109664417 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 694 471 253 136 18 chr9 14412434 14412603 -109663569 + B3A SINE B2 5 193 -5 5 694 295 297 38 38 chr9 14413009 14413114 -109663058 + MER5A DNA MER1_type 48 152 -37 5 694 586 242 8 0 chr9 14413577 14413701 -109662471 - RSINE1 SINE B4 -36 129 5 5 694 210 333 17 43 chr9 14413740 14413856 -109662316 - MIRb SINE MIR -14 254 142 5 694 255 304 0 0 chr9 14413905 14413961 -109662211 + B1F SINE Alu 25 80 -69 5 694 689 247 0 20 chr9 14414201 14414354 -109661818 + RSINE1 SINE B4 16 165 0 5 694 502 247 0 11 chr9 14414354 14414534 -109661638 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 694 320 53 0 0 chr9 14414567 14414605 -109661567 + HAL1-3A_ME LINE L1 1975 2012 -846 5 694 1097 320 76 29 chr9 14414694 14415715 -109660457 + L1MD2 LINE L1 5018 6099 -260 5 695 28 0 0 0 chr9 14419469 14419497 -109656675 + GC_rich Low_complexity Low_complexity 1 28 0 5 695 214 355 30 45 chr9 14420636 14420834 -109655338 - MIR3 SINE MIR -9 199 5 5 695 242 345 36 18 chr9 14420995 14421107 -109655065 + MIR SINE MIR 17 130 -132 5 695 1128 242 68 90 chr9 14421156 14421575 -109654597 + MTD LTR MaLR 1 405 -14 5 695 357 213 116 11 chr9 14422541 14422636 -109653536 + B1F2 SINE Alu 44 148 -1 5 695 257 382 11 0 chr9 14423707 14423796 -109652376 - PB1D10 SINE Alu -27 90 1 5 695 337 312 26 9 chr9 14423859 14423972 -109652200 + Tigger7 DNA MER2_type 1 115 -2376 5 695 300 284 78 0 chr9 14424088 14424204 -109651968 + Tigger7 DNA MER2_type 2289 2413 -78 5 695 579 290 115 59 chr9 14424208 14424564 -109651608 - MTEa LTR MaLR -3 376 1 5 695 200 222 22 0 chr9 14424915 14424960 -109651212 + GA-rich Low_complexity Low_complexity 4 49 0 5 695 1594 195 138 8 chr9 14425059 14425415 -109650757 - MTD LTR MaLR -17 402 1 5 695 917 237 30 0 chr9 14426090 14426288 -109649884 + B3 SINE B2 2 205 -11 5 695 697 288 52 38 chr9 14426700 14426913 -109649259 + ID_B1 SINE B4 3 218 -6 5 695 1946 148 74 6 chr9 14426897 14427236 -109648936 + MTD LTR MaLR 58 419 0 5 695 561 332 60 28 chr9 14428863 14429114 -109647058 - MER2 DNA MER2_type 0 345 87 5 695 384 119 0 0 chr9 14429177 14429236 -109646936 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 695 337 333 18 18 chr9 14429359 14429472 -109646700 + MIRb SINE MIR 80 192 -76 5 695 243 310 98 45 chr9 14430999 14431131 -109645041 - MIR SINE MIR -123 145 7 5 695 248 281 57 11 chr9 14431206 14431317 -109644855 + MLT1J LTR MaLR 40 198 -314 5 695 327 279 83 50 chr9 14432355 14432423 -109643749 + L1MEe LINE L1 678 745 -4109 5 695 1277 47 0 0 chr9 14432423 14432571 -109643601 + B1_Mus1 SINE Alu 1 148 0 5 695 327 279 83 50 chr9 14432571 14432683 -109643489 + L1MEe LINE L1 746 863 -3991 5 695 668 308 121 44 chr9 14432726 14432998 -109643174 - MTEa LTR MaLR -86 293 1 5 695 333 0 0 0 chr9 14433072 14433109 -109643063 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 695 188 349 60 12 chr9 14433140 14433224 -109642948 - L2c LINE L2 -3 3384 3297 5 695 1879 167 34 50 chr9 14433409 14433787 -109642385 + ORR1D1 LTR MaLR 3 374 0 5 695 435 250 168 7 chr9 14434173 14434310 -109641862 + ORR1E LTR MaLR 48 206 -153 5 695 1168 267 37 122 chr9 14435246 14435632 -109640540 + ORR1D2 LTR MaLR 4 376 -3 5 695 679 313 168 28 chr9 14435805 14436091 -109640081 + MER21B LTR ERV1 409 734 -129 5 695 527 261 0 57 chr9 14437274 14437396 -109638776 - PB1D7 SINE Alu 0 120 6 5 695 369 0 0 0 chr9 14437537 14437578 -109638594 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 695 225 108 0 0 chr9 14439056 14439093 -109637079 + (T)n Simple_repeat Simple_repeat 1 37 0 5 695 215 238 0 0 chr9 14440566 14440608 -109635564 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 695 209 298 0 0 chr9 14441035 14441092 -109635080 + L2 LINE L2 1362 1418 -2001 5 695 245 355 48 68 chr9 14441151 14441444 -109634728 + L2 LINE L2 1754 2040 -1379 5 695 181 327 0 0 chr9 14441456 14441508 -109634664 + MIRb SINE MIR 34 85 -183 5 695 586 342 104 32 chr9 14441841 14442188 -109633984 + MLT1A LTR MaLR 3 374 0 5 695 541 244 26 0 chr9 14442485 14442600 -109633572 + PB1D7 SINE Alu 2 119 -1 5 695 402 187 0 0 chr9 14442726 14442817 -109633355 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 695 624 331 14 45 chr9 14442832 14443123 -109633049 - B4A SINE B4 -9 283 2 5 695 428 285 27 27 chr9 14443916 14444064 -109632108 + B1F SINE Alu 1 148 -1 5 695 306 181 4 109 chr9 14446054 14446185 -109629987 - PB1D10 SINE Alu 0 149 35 5 695 213 39 0 0 chr9 14446598 14446624 -109629548 + (TCC)n Simple_repeat Simple_repeat 2 27 0 5 695 366 23 0 0 chr9 14446805 14446848 -109629324 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 695 274 277 69 0 chr9 14447385 14447486 -109628686 + MIR SINE MIR 43 150 -112 5 695 1117 124 109 43 chr9 14448384 14448595 -109627577 - URR1B DNA MER1_type 0 225 1 5 695 477 0 0 0 chr9 14448753 14448806 -109627366 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 695 256 299 0 25 chr9 14449786 14449865 -109626307 + GA-rich Low_complexity Low_complexity 1 77 0 5 695 464 86 0 14 chr9 14449874 14449945 -109626227 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 695 33 43 0 0 chr9 14449990 14450037 -109626135 + AT_rich Low_complexity Low_complexity 1 47 0 5 695 183 325 124 44 chr9 14450668 14450843 -109625329 + MIRm SINE MIR 4 184 -24 5 695 1984 171 31 3 chr9 14450881 14451233 -109624939 + ORR1D1 LTR MaLR 5 366 -8 6 695 363 354 31 0 chr9 14451394 14451521 -109624651 + ID_B1 SINE B4 92 222 -2 6 695 8340 58 3 2 chr9 14454463 14455493 -109620679 + L1_Mus3 LINE L1 5604 6634 -4 6 695 243 341 75 54 chr9 14456911 14457155 -109619017 + MIRb SINE MIR 2 268 0 6 695 682 292 82 63 chr9 14457734 14458052 -109618120 - MLT1A LTR MaLR -40 334 11 6 695 43 35 0 0 chr9 14458066 14458123 -109618049 + AT_rich Low_complexity Low_complexity 1 57 0 6 695 237 241 0 0 chr9 14458405 14458463 -109617709 - B4A SINE B4 -234 58 1 6 695 1020 131 9 103 chr9 14458541 14458754 -109617418 + B2_Mm2 SINE B2 2 194 -1 6 695 3105 76 8 0 chr9 14459238 14459634 -109616538 + MTB LTR MaLR 1 399 -1 6 695 301 400 45 6 chr9 14460238 14460394 -109615778 + MER5B DNA MER1_type 1 162 -16 6 695 1073 95 0 26 chr9 14460646 14460797 -109615375 - B1_Mus2 SINE Alu 0 147 1 6 695 513 186 9 47 chr9 14460910 14461017 -109615155 + PB1D9 SINE Alu 18 120 0 6 695 324 0 0 0 chr9 14461423 14461459 -109614713 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 695 315 0 0 0 chr9 14461459 14461493 -109614679 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 695 453 248 35 17 chr9 14461497 14461612 -109614560 - PB1D7 SINE Alu -2 118 2 6 695 523 292 26 59 chr9 14461612 14461918 -109614254 + L1MD2 LINE L1 4848 5143 -1003 6 695 207 309 14 14 chr9 14462033 14462102 -109614070 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 6 695 305 250 15 0 chr9 14462126 14462194 -109613978 + L1MD2 LINE L1 5320 5388 -971 6 695 965 245 119 12 chr9 14462438 14462744 -109613428 + ORR1E LTR MaLR 24 379 0 6 695 305 353 14 49 chr9 14462744 14462887 -109613285 + L1MD2 LINE L1 5713 5850 -392 6 695 380 288 34 132 chr9 14463033 14463237 -109612935 + L1MD2 LINE L1 6068 6251 -108 6 695 771 242 154 12 chr9 14463662 14463909 -109612263 - B4A SINE B4 -10 282 1 6 695 430 304 60 53 chr9 14464279 14464534 -109611638 - MIR SINE MIR -34 242 1 6 695 363 194 163 0 chr9 14465001 14465099 -109611073 - MLT1H2 LTR MaLR -2 487 374 6 695 249 323 88 38 chr9 14465286 14465468 -109610704 - MLT1H2 LTR MaLR -328 267 72 6 695 243 0 0 0 chr9 14465860 14465887 -109610285 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 695 396 0 0 0 chr9 14465887 14465930 -109610242 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 695 357 281 19 37 chr9 14466159 14466266 -109609906 + PB1 SINE Alu 21 125 -2 6 695 483 311 16 0 chr9 14466268 14466390 -109609782 + B1F1 SINE Alu 26 149 0 6 695 198 143 0 0 chr9 14466691 14466726 -109609446 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 695 283 286 51 43 chr9 14468847 14468964 -109607208 - L1MD LINE L1 -2057 4089 3972 6 695 196 30 61 0 chr9 14469079 14469112 -109607060 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 695 436 117 0 0 chr9 14469230 14469290 -109606882 + L1_Mm LINE L1 5519 5578 -305 6 695 283 296 115 29 chr9 14469397 14469536 -109606636 - L1MD LINE L1 -3259 2887 2737 6 695 487 274 169 8 chr9 14469622 14469858 -109606314 - MLT1C LTR MaLR 0 467 194 6 695 1242 214 106 9 chr9 14469986 14470307 -109605865 + MTEb LTR MaLR 9 360 -19 6 695 267 364 27 0 chr9 14470371 14470481 -109605691 + MIRb SINE MIR 44 156 -112 6 695 300 154 0 0 chr9 14471230 14471282 -109604890 + G-rich Low_complexity Low_complexity 5 56 0 6 695 330 292 86 82 chr9 14471374 14471427 -109604745 + B4A SINE B4 1 47 -245 6 695 1089 57 43 0 chr9 14471427 14471568 -109604604 + B1_Mus2 SINE Alu 1 147 0 6 695 330 292 86 82 chr9 14471568 14471805 -109604367 + B4A SINE B4 48 292 0 6 695 379 191 22 22 chr9 14471873 14472007 -109604165 + (CATA)n Simple_repeat Simple_repeat 1 134 0 6 695 380 172 34 45 chr9 14472074 14472251 -109603921 + (CATATA)n Simple_repeat Simple_repeat 1 175 0 6 695 619 265 41 0 chr9 14472277 14472447 -109603725 + Lx8 LINE L1 6943 7119 -354 6 695 222 323 48 0 chr9 14472986 14473110 -109603062 - L2b LINE L2 -306 3069 2940 6 695 722 275 147 40 chr9 14473967 14474293 -109601879 + MLT1C LTR MaLR 97 457 -10 6 695 1124 157 0 0 chr9 14474300 14474478 -109601694 + MTC LTR MaLR 1 178 -243 6 695 357 269 104 19 chr9 14474505 14474610 -109601562 + MTD LTR MaLR 1 114 -305 6 695 2033 153 85 26 chr9 14474610 14474998 -109601174 - RLTR11A LTR ERVK 0 528 118 6 695 1231 22 0 0 chr9 14475000 14475138 -109601034 + B1_Mus1 SINE Alu 5 142 -6 6 695 1058 123 6 0 chr9 14475185 14475356 -109600816 + (GAA)n Simple_repeat Simple_repeat 3 174 0 6 695 267 167 372 0 chr9 14475360 14475438 -109600734 - RLTR11A LTR ERVK -401 127 21 6 695 3378 98 13 8 chr9 14475438 14475909 -109600263 - MT2B2 LTR ERVL 0 584 112 6 695 2056 105 92 41 chr9 14475909 14476099 -109600073 - RLTR9E LTR ERVK 0 409 228 6 695 3344 38 8 0 chr9 14476099 14476492 -109599680 + MTA_Mm LTR MaLR 1 396 0 6 695 2056 105 92 41 chr9 14476492 14476690 -109599482 - RLTR9E LTR ERVK -182 227 1 6 695 793 81 54 0 chr9 14476690 14476801 -109599371 - MT2B2 LTR ERVL -467 117 1 6 695 250 385 33 33 chr9 14476824 14476977 -109599195 - B4 SINE B4 -54 238 86 6 695 532 269 0 0 chr9 14476873 14476977 -109599195 - B1F2 SINE Alu -45 104 1 6 695 232 267 17 125 chr9 14476977 14476992 -109599180 - MT2B LTR ERVL -343 257 152 6 695 1267 104 11 16 chr9 14477012 14477197 -109598975 + B2_Mm1t SINE B2 1 184 -9 6 695 756 273 72 23 chr9 14478116 14478376 -109597796 - ORR1E LTR MaLR -77 302 4 6 695 194 267 33 0 chr9 14478655 14478715 -109597457 - L2b LINE L2 -822 2597 2536 6 695 342 0 0 0 chr9 14480115 14480153 -109596019 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 695 210 328 14 29 chr9 14480908 14480977 -109595195 + MIRc SINE MIR 142 209 -59 6 695 975 59 0 0 chr9 14481283 14481418 -109594754 + (TCTCCC)n Simple_repeat Simple_repeat 3 137 0 6 695 365 292 40 32 chr9 14481544 14481668 -109594504 - B4A SINE B4 -162 130 6 6 695 2117 244 31 13 chr9 14482757 14483618 -109592554 - Lx6 LINE L1 -26 7434 6279 6 695 576 281 20 142 chr9 14485397 14485538 -109590634 - ID_B1 SINE B4 -1 223 101 6 695 413 258 108 0 chr9 14485538 14485631 -109590541 - PB1D9 SINE Alu -13 107 5 6 695 576 281 20 142 chr9 14485631 14485702 -109590470 - ID_B1 SINE B4 -124 100 37 6 695 1170 201 148 64 chr9 14485702 14485879 -109590293 - ORR1D1 LTR MaLR 0 374 166 6 695 687 57 0 0 chr9 14485879 14485967 -109590205 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 695 1170 201 148 64 chr9 14485967 14486134 -109590038 - ORR1D1 LTR MaLR -209 165 2 6 695 576 281 20 142 chr9 14486134 14486173 -109589999 - ID SINE ID -188 36 2 6 695 560 341 62 15 chr9 14488612 14488886 -109587286 - B4A SINE B4 -4 288 2 6 695 387 0 0 0 chr9 14489151 14489194 -109586978 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 695 198 298 122 40 chr9 14490598 14490722 -109585450 + MIRm SINE MIR 17 151 -117 6 695 967 250 9 18 chr9 14490722 14490946 -109585226 + ID_B1 SINE B4 1 222 -2 6 695 194 301 163 52 chr9 14490946 14490999 -109585173 + MIRc SINE MIR 152 210 -58 6 695 260 352 161 73 chr9 14492474 14492722 -109583450 + B4A SINE B4 1 270 -22 6 695 387 0 0 0 chr9 14492723 14492766 -109583406 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 695 855 82 0 0 chr9 14492766 14492899 -109583273 + (GA)n Simple_repeat Simple_repeat 2 135 0 6 695 645 210 31 83 chr9 14492904 14493096 -109583076 + B3A SINE B2 2 183 -15 6 695 210 175 15 45 chr9 14493195 14493261 -109582911 + CT-rich Low_complexity Low_complexity 2 65 0 6 695 361 326 177 20 chr9 14494478 14494625 -109581547 + B3 SINE B2 1 170 -46 6 695 315 0 0 0 chr9 14494631 14494666 -109581506 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 695 229 284 73 73 chr9 14495538 14495675 -109580497 + YREP_Mm Unknown Unknown 158 294 -1518 6 695 670 229 8 8 chr9 14495555 14495687 -109580485 - ID_B1 SINE B4 0 224 93 6 695 437 322 136 56 chr9 14495695 14496179 -109579993 - L1M5 LINE L1 -2064 4082 3560 6 695 244 276 90 52 chr9 14496364 14496498 -109579674 - MIR SINE MIR -122 140 2 6 695 24 0 0 0 chr9 14496536 14496560 -109579612 + AT_rich Low_complexity Low_complexity 1 24 0 6 695 225 291 160 28 chr9 14496702 14496808 -109579364 - RSINE1 SINE B4 -38 127 8 6 695 392 275 12 0 chr9 14497565 14497645 -109578527 + RSINE1 SINE B4 54 134 -31 6 695 180 0 0 0 chr9 14497646 14497666 -109578506 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 6 695 425 226 37 56 chr9 14497702 14497810 -109578362 - PB1D10 SINE Alu -9 108 3 6 695 597 64 0 0 chr9 14498387 14498465 -109577707 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 6 695 459 0 0 0 chr9 14498951 14499002 -109577170 + (GAA)n Simple_repeat Simple_repeat 1 51 0 6 695 1196 96 0 6 chr9 14499002 14499180 -109576992 + (GGA)n Simple_repeat Simple_repeat 2 178 0 6 695 676 261 75 25 chr9 14499418 14499618 -109576554 + B3 SINE B2 1 210 -6 6 695 986 233 206 7 chr9 14500048 14500329 -109575843 + ORR1D1 LTR MaLR 38 374 0 1 695 995 209 25 10 chr9 14500910 14501113 -109575059 + B3 SINE B2 4 209 -7 2 695 22 56 0 0 chr9 14501113 14501149 -109575023 + AT_rich Low_complexity Low_complexity 1 36 0 3 695 386 315 66 33 chr9 14502016 14502259 -109573913 - LTR16B1 LTR ERVL -69 411 161 4 695 877 243 112 36 chr9 14502450 14502753 -109573419 + ORR1E LTR MaLR 34 359 0 5 695 197 159 67 22 chr9 14502801 14502846 -109573326 + MIRm SINE MIR 219 265 -11 6 695 342 299 105 53 chr9 14502901 14503053 -109573119 - MIRb SINE MIR -64 204 45 7 695 306 0 0 0 chr9 14503264 14503298 -109572874 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 695 314 267 0 13 chr9 14503311 14503387 -109572785 + ID4 SINE ID 1 75 -8 9 695 963 224 122 36 chr9 14503746 14504024 -109572148 + MTD LTR MaLR 2 303 -116 1 695 297 136 0 0 chr9 14504024 14504090 -109572082 + (TCC)n Simple_repeat Simple_repeat 2 67 0 1 695 548 228 37 75 chr9 14504090 14504251 -109571921 + MTD LTR MaLR 254 408 -11 1 695 381 257 27 45 chr9 14504618 14504728 -109571444 + PB1D10 SINE Alu 2 109 -8 1 695 254 250 18 0 chr9 14504732 14504788 -109571384 + GA-rich Low_complexity Low_complexity 2 58 0 1 695 219 139 0 0 chr9 14504888 14504924 -109571248 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 695 1336 72 5 32 chr9 14505630 14505816 -109570356 - B2_Mm2 SINE B2 -14 181 1 1 695 383 98 16 0 chr9 14506422 14506483 -109569689 + (GAGAA)n Simple_repeat Simple_repeat 4 65 0 1 695 243 0 0 0 chr9 14506648 14506675 -109569497 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 695 318 316 381 61 chr9 14507711 14507924 -109568248 + B4A SINE B4 8 288 -4 1 695 498 129 0 0 chr9 14507928 14508013 -109568159 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 695 234 203 96 15 chr9 14508493 14508557 -109567615 - PB1 SINE Alu -10 139 68 2 695 195 204 0 0 chr9 14508674 14508718 -109567454 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 2 695 224 258 19 76 chr9 14509140 14509169 -109567003 - B2_Mm2 SINE B2 -9 186 158 2 695 354 23 0 0 chr9 14509169 14509212 -109566960 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2 695 224 258 19 76 chr9 14509212 14509287 -109566885 - B2_Mm2 SINE B2 -38 157 88 2 695 230 244 163 22 chr9 14511549 14511641 -109564531 + ORR1E LTR MaLR 255 359 0 2 695 352 268 78 26 chr9 14512614 14512729 -109563443 + RSINE1 SINE B4 2 122 -43 2 695 1032 35 22 28 chr9 14512731 14512910 -109563262 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 695 26 30 0 0 chr9 14512931 14512964 -109563208 + AT_rich Low_complexity Low_complexity 1 33 0 2 695 429 273 30 8 chr9 14513127 14513260 -109562912 + Lx9 LINE L1 7300 7435 -209 2 695 267 31 0 0 chr9 14515146 14515178 -109560994 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 695 311 341 6 28 chr9 14515423 14515604 -109560568 + (CATA)n Simple_repeat Simple_repeat 4 180 0 3 695 727 216 52 0 chr9 14516054 14516207 -109559965 + MTC LTR MaLR 1 161 -260 3 695 497 179 0 0 chr9 14516220 14516304 -109559868 + MTC LTR MaLR 260 343 -78 3 695 499 172 12 4 chr9 14516525 14516620 -109559552 + MTC LTR MaLR 278 421 0 3 695 224 91 23 0 chr9 14518299 14518343 -109557829 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 3 695 1237 61 0 0 chr9 14518343 14518490 -109557682 - B1_Mus1 SINE Alu -1 147 1 3 695 981 194 42 28 chr9 14518699 14518911 -109557261 - B3 SINE B2 -1 215 1 3 695 281 315 95 18 chr9 14518997 14519165 -109557007 + B3A SINE B2 2 182 -16 3 695 504 117 0 0 chr9 14519991 14520068 -109556104 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 695 1001 188 29 149 chr9 14520953 14521303 -109554869 + RLTRETN_Mm LTR ERVK 1 308 -14 3 695 234 122 0 89 chr9 14522958 14523003 -109553169 - URR1A DNA MER1_type -107 119 79 3 695 260 255 81 17 chr9 14523063 14523157 -109553015 + B1F2 SINE Alu 13 136 -13 4 695 822 193 53 0 chr9 14523182 14523332 -109552840 + B3 SINE B2 2 159 -57 4 695 658 205 19 33 chr9 14523330 14523507 -109552665 + B3 SINE B2 22 189 -6 4 695 23 54 0 0 chr9 14524748 14524785 -109551387 + AT_rich Low_complexity Low_complexity 1 37 0 4 695 372 77 0 0 chr9 14524795 14524847 -109551325 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 695 1976 160 61 34 chr9 14527501 14527699 -109548473 + MTC LTR MaLR 1 205 -216 4 695 207 0 0 0 chr9 14527699 14527722 -109548450 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 695 1976 160 61 34 chr9 14527722 14527930 -109548242 + MTC LTR MaLR 206 418 -3 4 695 401 302 55 47 chr9 14528163 14528207 -109547965 - L1MA6 LINE L1 -175 6125 6088 4 695 2697 138 187 24 chr9 14528207 14528710 -109547462 + RMER4B LTR ERVK 1 585 0 4 695 401 302 55 47 chr9 14528710 14528922 -109547250 - L1MA6 LINE L1 -213 6087 5867 4 695 457 288 283 15 chr9 14529981 14530251 -109545921 + ORR1E LTR MaLR 32 374 -5 4 695 194 135 0 37 chr9 14531574 14531628 -109544544 + (TCTG)n Simple_repeat Simple_repeat 2 53 0 5 695 432 0 0 0 chr9 14531632 14531680 -109544492 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 695 1057 216 99 31 chr9 14532326 14532618 -109543554 + RLTR20C LTR ERVK 1 312 -222 5 695 722 196 100 13 chr9 14532610 14532760 -109543412 + RLTR20C LTR ERVK 416 578 0 5 695 547 274 88 69 chr9 14533225 14533499 -109542673 + B4A SINE B4 1 279 -13 5 695 598 176 228 19 chr9 14534978 14535140 -109541032 + B3A SINE B2 3 198 0 5 695 3345 78 38 2 chr9 14538103 14538551 -109537621 + L1_Mus3 LINE L1 6156 6619 -19 5 695 234 0 0 0 chr9 14538750 14538776 -109537396 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 695 531 102 0 0 chr9 14538776 14538863 -109537309 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 695 268 357 38 66 chr9 14540249 14540432 -109535740 - B2_Mm1t SINE B2 -14 179 2 5 695 351 219 188 0 chr9 14542113 14542209 -109533963 + B3A SINE B2 28 141 -57 5 695 206 62 0 30 chr9 14542209 14542242 -109533930 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 695 813 162 35 0 chr9 14542279 14542421 -109533751 + B1_Mus1 SINE Alu 2 148 0 6 695 316 327 52 61 chr9 14542443 14542589 -109533583 + L1MB3 LINE L1 5965 6113 -70 6 695 1265 99 66 6 chr9 14542589 14542772 -109533400 + B2_Mm2 SINE B2 1 194 -1 6 695 316 327 52 61 chr9 14542772 14542837 -109533335 + L1MB3 LINE L1 6114 6174 -9 6 695 402 283 13 63 chr9 14543059 14543215 -109532957 + MLT1B LTR MaLR 217 390 0 6 695 604 265 70 25 chr9 14543391 14543592 -109532580 + ID_B1 SINE B4 3 212 -12 6 695 261 0 0 0 chr9 14544352 14544381 -109531791 + (A)n Simple_repeat Simple_repeat 1 29 0 6 695 180 217 0 0 chr9 14545225 14545271 -109530901 + CT-rich Low_complexity Low_complexity 4 49 0 6 695 614 261 44 16 chr9 14545659 14545842 -109530330 + B3A SINE B2 1 188 -10 6 695 23 33 0 0 chr9 14545842 14545872 -109530300 + AT_rich Low_complexity Low_complexity 1 30 0 6 695 24 0 0 0 chr9 14545941 14545965 -109530207 + AT_rich Low_complexity Low_complexity 1 24 0 7 695 1799 193 140 43 chr9 14546735 14547222 -109528950 + RMER15 LTR ERVL 28 561 -14 7 695 343 320 0 10 chr9 14547622 14547726 -109528446 + GA-rich Low_complexity Low_complexity 2 104 0 7 695 1124 241 32 32 chr9 14547739 14548022 -109528150 - RMER5 LTR ERV1 -1 533 251 7 695 287 264 80 50 chr9 14548088 14548252 -109527920 - MLT1F1 LTR MaLR -371 198 29 7 86 2343 189 77 4 chr9 14548889 14549357 -109526815 - RMER5 LTR ERV1 0 534 33 7 696 513 302 18 30 chr9 14549638 14549802 -109526370 - RSINE1 SINE B4 0 165 4 7 696 1410 58 0 0 chr9 14551107 14551406 -109524766 + (CA)n Simple_repeat Simple_repeat 1 299 0 7 696 323 0 48 0 chr9 14551538 14551580 -109524592 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 7 696 320 331 14 35 chr9 14551854 14551995 -109524177 - MIR SINE MIR -113 149 12 7 696 735 160 83 15 chr9 14553306 14553439 -109522733 + B1_Mur3 SINE Alu 1 142 -7 8 696 192 152 0 0 chr9 14556858 14556891 -109519281 + GA-rich Low_complexity Low_complexity 1 33 0 8 696 258 156 0 22 chr9 14557083 14557129 -109519043 - RMER19B LTR ERVK -418 484 440 8 696 1400 76 11 0 chr9 14557177 14557362 -109518810 - B2_Mm1t SINE B2 -6 187 1 8 696 363 272 126 16 chr9 14558174 14558301 -109517871 - ID_B1 SINE B4 0 224 84 8 696 411 56 0 0 chr9 14558834 14558888 -109517284 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 696 304 327 27 98 chr9 14558991 14559174 -109516998 - B4A SINE B4 -120 172 3 8 696 880 233 226 0 chr9 14559756 14560057 -109516115 - ORR1D2 LTR MaLR 0 370 2 8 696 342 0 0 0 chr9 14560822 14560860 -109515312 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 696 369 0 0 0 chr9 14560860 14560900 -109515272 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 696 447 250 16 79 chr9 14561311 14561437 -109514735 - B1F SINE Alu -19 130 13 9 696 363 242 190 110 chr9 14561780 14561980 -109514192 - ID_B1 SINE B4 -6 218 3 9 696 756 241 86 0 chr9 14562013 14562200 -109513972 - B3 SINE B2 0 216 14 9 696 422 131 0 23 chr9 14562287 14562373 -109513799 + (CAGA)n Simple_repeat Simple_repeat 2 85 0 9 696 423 0 0 0 chr9 14563387 14563434 -109512738 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 9 696 690 202 20 8 chr9 14563563 14563800 -109512372 + CT-rich Low_complexity Low_complexity 1 239 0 9 696 401 263 65 30 chr9 14564310 14564494 -109511678 + MIR SINE MIR 5 198 -64 9 696 405 305 112 38 chr9 14564578 14564738 -109511434 + B3A SINE B2 17 188 -10 9 696 5505 55 1 3 chr9 14565118 14565797 -109510375 - L1Md_F2 LINE L1 0 6582 5905 9 696 1493 166 138 22 chr9 14566822 14567185 -109508987 + MTD LTR MaLR 1 405 -14 9 696 406 290 54 16 chr9 14567387 14567573 -109508599 + MIRb SINE MIR 24 216 -52 1 696 181 279 76 0 chr9 14567810 14567889 -109508283 - L3b LINE CR1 -208 274 190 1 696 516 209 0 0 chr9 14568053 14568144 -109508028 - ID_B1 SINE B4 -26 198 108 1 696 273 156 0 0 chr9 14568549 14568594 -109507578 - tRNA-Gly-GGA tRNA tRNA -30 45 1 1 696 588 214 9 0 chr9 14568708 14568820 -109507352 + PB1D9 SINE Alu 2 114 -6 1 696 351 0 0 0 chr9 14570012 14570051 -109506121 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 696 732 256 62 80 chr9 14570138 14570524 -109505648 + MTD LTR MaLR 18 396 -23 1 696 279 0 0 0 chr9 14571477 14571508 -109504664 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 696 1068 119 0 0 chr9 14571523 14571683 -109504489 + B2_Mm2 SINE B2 2 161 -34 1 696 195 69 0 0 chr9 14571683 14571712 -109504460 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 696 193 321 107 0 chr9 14572054 14572138 -109504034 - L2b LINE L2 -30 3345 3253 1 696 351 0 0 0 chr9 14572150 14572189 -109503983 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 696 224 197 111 32 chr9 14572411 14572474 -109503698 - B4 SINE B4 -224 68 1 1 696 654 253 18 24 chr9 14572516 14572686 -109503486 + B3A SINE B2 14 182 -16 1 696 287 259 123 35 chr9 14574167 14574309 -109501863 + B4 SINE B4 84 292 0 1 696 630 0 0 0 chr9 14574310 14574380 -109501792 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 696 226 258 15 0 chr9 14574840 14574906 -109501266 - ID4 SINE ID -16 67 1 1 696 1394 121 37 188 chr9 14576427 14576805 -109499367 - ORR1A4 LTR MaLR -8 321 1 1 696 845 302 48 19 chr9 14576814 14577276 -109498896 + L1ME3A LINE L1 4993 5469 -695 1 696 234 294 115 34 chr9 14577887 14578035 -109498137 + L1ME3A LINE L1 6008 6167 -6 1 696 187 79 26 26 chr9 14578339 14578378 -109497794 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 696 389 202 75 28 chr9 14579044 14579151 -109497021 + PB1D7 SINE Alu 1 112 -8 1 696 4082 46 0 0 chr9 14579632 14580106 -109496066 + MT2C_Mm LTR ERVL 2 475 0 1 696 519 283 83 12 chr9 14580109 14580363 -109495809 + L1MA10 LINE L1 5919 6190 -144 1 696 644 181 100 115 chr9 14580527 14580727 -109495445 + B3A SINE B2 2 198 0 1 696 1616 37 11 0 chr9 14581044 14581234 -109494938 + B2_Mm1a SINE B2 2 193 0 1 696 24 0 0 0 chr9 14581521 14581545 -109494627 + AT_rich Low_complexity Low_complexity 1 24 0 1 696 294 29 0 0 chr9 14582181 14582216 -109493956 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 696 1629 140 51 137 chr9 14582869 14583299 -109492873 + RLTR9C LTR ERVK 1 393 0 1 696 574 250 153 0 chr9 14583753 14583929 -109492243 - B3 SINE B2 -13 203 1 1 696 934 263 127 0 chr9 14584062 14584385 -109491787 - MTEb LTR MaLR 0 379 16 1 696 265 121 29 57 chr9 14584622 14584692 -109491480 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 1 696 674 265 92 10 chr9 14592034 14592240 -109483932 + ID_B1 SINE B4 2 224 0 1 696 335 305 86 0 chr9 14593253 14593358 -109482814 - ID_B1 SINE B4 -27 197 84 1 696 447 136 11 0 chr9 14594458 14594540 -109481632 - B1_Mur4 SINE Alu -11 139 52 1 696 347 205 51 13 chr9 14594580 14594659 -109481513 - B4A SINE B4 -22 270 189 1 696 576 307 56 120 chr9 14595220 14595453 -109480719 - MTD LTR MaLR -13 406 210 1 696 1203 61 0 26 chr9 14595453 14595605 -109480567 - B1_Mus1 SINE Alu 0 148 1 1 696 576 307 56 120 chr9 14595605 14595797 -109480375 - MTD LTR MaLR -210 209 8 1 696 270 268 18 0 chr9 14596217 14596273 -109479899 - ID4_ SINE ID -8 75 19 1 696 530 181 106 21 chr9 14596401 14596542 -109479630 - L1MD3 LINE L1 -513 7482 7330 1 696 812 134 0 53 chr9 14596549 14596682 -109479490 + B1_Mur4 SINE Alu 9 137 -13 1 696 207 0 0 0 chr9 14596682 14596705 -109479467 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1 696 812 134 0 53 chr9 14596705 14596721 -109479451 + B1_Mur4 SINE Alu 138 150 0 1 696 214 246 46 0 chr9 14597083 14597148 -109479024 + B1F SINE Alu 70 137 -12 1 696 312 308 85 2 chr9 14597160 14597306 -109478866 + MIR SINE MIR 20 185 -91 1 696 451 157 0 35 chr9 14597598 14597684 -109478488 - B1_Mur1 SINE Alu 0 149 67 1 696 21 57 0 0 chr9 14597758 14597793 -109478379 + AT_rich Low_complexity Low_complexity 1 35 0 1 696 4193 167 24 3 chr9 14597793 14598539 -109477633 - Lx3C LINE L1 -2 6974 6213 1 696 22 0 0 0 chr9 14599085 14599107 -109477065 + AT_rich Low_complexity Low_complexity 1 22 0 1 696 340 278 33 0 chr9 14600575 14600665 -109475507 - PB1D10 SINE Alu -2 115 23 1 696 537 342 17 0 chr9 14602277 14602458 -109473714 + B4 SINE B4 88 271 -21 1 696 600 107 132 18 chr9 14602540 14602654 -109473518 - B1_Mur2 SINE Alu 0 149 23 1 696 180 0 0 0 chr9 14602659 14602679 -109473493 + (T)n Simple_repeat Simple_repeat 1 20 0 1 696 266 234 103 31 chr9 14603787 14603884 -109472288 - Looper DNA PiggyBac -221 1337 1234 1 696 324 0 0 0 chr9 14604627 14604663 -109471509 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 696 225 0 0 0 chr9 14604663 14604687 -109471485 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 696 623 239 90 20 chr9 14605565 14605766 -109470406 - L1MC4a LINE L1 -984 6898 6684 1 696 234 0 0 0 chr9 14605864 14605890 -109470282 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 696 250 94 0 86 chr9 14605892 14605962 -109470210 + (CAGA)n Simple_repeat Simple_repeat 2 65 0 1 696 446 216 71 89 chr9 14607521 14607689 -109468483 - RSINE1 SINE B4 0 165 1 1 696 264 198 73 82 chr9 14607820 14607930 -109468242 + L1ME2z LINE L1 6215 6323 -121 1 696 261 0 0 0 chr9 14608001 14608030 -109468142 + (T)n Simple_repeat Simple_repeat 1 29 0 1 696 344 230 87 39 chr9 14608791 14608895 -109467277 - PB1D10 SINE Alu -8 109 1 1 696 2394 64 6 3 chr9 14608919 14609234 -109466938 - L1_Mus3 LINE L1 -3 6635 6320 1 696 27 29 0 0 chr9 14609517 14609551 -109466621 + AT_rich Low_complexity Low_complexity 1 34 0 1 696 323 231 72 10 chr9 14609624 14609721 -109466451 - B1F1 SINE Alu -2 125 6 1 696 235 111 0 0 chr9 14610157 14610193 -109465979 - Lx8 LINE L1 -2 7471 7436 1 696 328 267 185 0 chr9 14610317 14610463 -109465709 - Lx8 LINE L1 -343 7130 6958 1 696 1308 103 16 5 chr9 14610572 14610758 -109465414 - B2_Mm2 SINE B2 -3 192 5 1 696 240 259 19 0 chr9 14611260 14611314 -109464858 - ID SINE ID -153 71 17 1 696 320 219 11 58 chr9 14611698 14611785 -109464387 - MER20 DNA MER1_type 0 219 137 1 696 589 203 196 11 chr9 14611802 14611981 -109464191 - MTC LTR MaLR -5 414 203 1 696 678 62 0 0 chr9 14611981 14612077 -109464095 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 1 696 879 130 106 11 chr9 14612479 14612658 -109463514 - MTC LTR MaLR -225 196 1 1 696 475 250 14 0 chr9 14612762 14612910 -109463262 + CT-rich Low_complexity Low_complexity 1 150 0 1 696 340 279 0 55 chr9 14612910 14613020 -109463152 - PB1D7 SINE Alu -6 114 11 1 696 215 152 22 0 chr9 14613166 14613212 -109462960 + T-rich Low_complexity Low_complexity 2 48 0 1 696 298 252 30 75 chr9 14613217 14613350 -109462822 - PB1 SINE Alu 0 127 1 1 696 252 301 10 70 chr9 14613501 14613601 -109462571 - MER3 DNA MER1_type -72 137 44 1 696 330 200 0 0 chr9 14613614 14613674 -109462498 + ID_B1 SINE B4 85 144 -80 1 696 270 0 0 0 chr9 14615080 14615110 -109461062 + (T)n Simple_repeat Simple_repeat 1 30 0 1 696 304 229 146 0 chr9 14615166 14615262 -109460910 + MER5A1 DNA MER1_type 57 166 0 1 696 254 354 8 120 chr9 14615272 14615506 -109460666 - MT2A LTR ERVL -135 398 191 1 696 459 284 70 6 chr9 14615552 14615708 -109460464 - ORR1D2 LTR MaLR -79 291 126 1 696 370 252 68 0 chr9 14616575 14616678 -109459494 - PB1D10 SINE Alu -7 110 1 1 696 1064 187 33 5 chr9 14617105 14617315 -109458857 + B3 SINE B2 1 216 0 1 696 3509 133 84 65 chr9 14617381 14618118 -109458054 - RMER17A LTR ERVK 0 751 1 1 696 1186 61 0 7 chr9 14618963 14619111 -109457061 + B1_Mus1 SINE Alu 2 148 0 1 696 225 182 0 0 chr9 14619114 14619169 -109457003 + A-rich Low_complexity Low_complexity 1 55 0 1 696 301 254 141 26 chr9 14619186 14619391 -109456781 - Charlie1a DNA MER1_type -1186 269 38 1 696 1339 171 91 0 chr9 14619738 14620001 -109456171 - ORR1B1 LTR MaLR -8 386 100 1 696 1522 58 11 0 chr9 14620352 14620541 -109455631 - B2_Mm1t SINE B2 -2 191 1 1 696 532 337 108 47 chr9 14620552 14620976 -109455196 - MLT1D LTR MaLR -50 455 6 1 696 568 229 38 0 chr9 14622308 14622439 -109453733 + ID_B1 SINE B4 84 219 -5 1 696 268 245 250 7 chr9 14622867 14623015 -109453157 + MIR SINE MIR 5 188 -74 1 696 676 193 20 52 chr9 14623125 14623278 -109452894 - B1_Mur3 SINE Alu -1 148 1 1 696 274 250 141 50 chr9 14623381 14623579 -109452593 + L2 LINE L2 2097 2312 -1107 1 696 467 222 13 42 chr9 14624700 14624841 -109451331 - MLT1A1 LTR MaLR -2 406 216 1 696 231 306 125 33 chr9 14625553 14625705 -109450467 + L1MB4 LINE L1 5191 5356 -790 1 696 359 330 178 6 chr9 14625962 14626310 -109449862 + L1MB4 LINE L1 5651 6058 -122 1 696 466 192 0 0 chr9 14626671 14626749 -109449423 - BC1_Mm scRNA scRNA -74 78 1 1 696 421 170 16 145 chr9 14626874 14626998 -109449174 + MT2B LTR ERVL 157 264 -337 1 696 1080 42 0 0 chr9 14626891 14627033 -109449139 + B1_Mus1 SINE Alu 7 148 0 1 696 1024 199 48 5 chr9 14627458 14627665 -109448507 - B3 SINE B2 0 216 1 1 696 543 289 109 23 chr9 14627803 14627880 -109448292 - B4 SINE B4 0 292 209 2 696 1111 231 39 7 chr9 14627880 14628159 -109448013 - B4A SINE B4 -2 290 3 2 696 543 289 109 23 chr9 14628159 14628347 -109447825 - B4 SINE B4 -84 208 5 2 696 23 0 0 0 chr9 14628760 14628783 -109447389 + AT_rich Low_complexity Low_complexity 1 23 0 2 696 1161 85 108 0 chr9 14628898 14629074 -109447098 - B2_Mm2 SINE B2 0 195 1 2 696 315 132 0 0 chr9 14629094 14629162 -109447010 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 696 937 204 49 19 chr9 14630361 14630566 -109445606 + B3 SINE B2 2 212 -4 2 696 396 207 141 0 chr9 14630641 14630745 -109445427 + B1_Mur2 SINE Alu 1 148 -1 2 696 180 0 0 0 chr9 14631223 14631243 -109444929 + (AGCTG)n Simple_repeat Simple_repeat 4 23 0 2 696 336 24 0 0 chr9 14631614 14631655 -109444517 + (TGG)n Simple_repeat Simple_repeat 3 43 0 2 696 961 72 71 14 chr9 14631766 14631780 -109444392 - B1_Mus1 SINE Alu 0 148 136 2 696 288 0 0 0 chr9 14631780 14631812 -109444360 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 696 961 72 71 14 chr9 14631812 14631937 -109444235 - B1_Mus1 SINE Alu -13 135 1 2 696 1646 31 0 10 chr9 14632006 14632200 -109443972 - B2_Mm1a SINE B2 0 193 2 2 696 210 259 0 0 chr9 14632263 14632321 -109443851 + T-rich Low_complexity Low_complexity 1 58 0 2 696 308 343 54 6 chr9 14632523 14632690 -109443482 - MIRb SINE MIR -22 246 72 2 696 1214 54 0 0 chr9 14634212 14634359 -109441813 + B1_Mus1 SINE Alu 2 148 0 2 696 270 0 0 0 chr9 14634359 14634389 -109441783 + (A)n Simple_repeat Simple_repeat 1 30 0 2 696 182 322 126 0 chr9 14634593 14634680 -109441492 + L3 LINE CR1 3526 3623 -866 2 696 189 0 0 0 chr9 14635102 14635123 -109441049 + (TGGGGG)n Simple_repeat Simple_repeat 5 25 0 2 696 356 147 59 0 chr9 14635141 14635209 -109440963 - ID2 SINE ID -1 82 11 2 696 1230 54 0 0 chr9 14635645 14635793 -109440379 - B1_Mus1 SINE Alu 0 148 1 2 696 566 254 140 11 chr9 14636130 14636309 -109439863 + B3 SINE B2 12 213 -3 2 696 209 217 45 2 chr9 14636717 14636797 -109439375 - MIR SINE MIR -76 200 105 2 696 262 324 14 35 chr9 14637558 14637699 -109438473 + RSINE1 SINE B4 18 155 -10 2 696 1068 95 0 0 chr9 14639700 14639847 -109436325 + B1_Mm SINE Alu 1 147 0 2 696 1178 61 0 0 chr9 14641231 14641378 -109434794 + B1_Mus2 SINE Alu 1 147 0 2 696 32 0 0 0 chr9 14641378 14641410 -109434762 + AT_rich Low_complexity Low_complexity 1 32 0 2 696 1296 114 0 30 chr9 14642517 14642716 -109433456 - B2_Mm2 SINE B2 -1 194 2 2 696 387 0 0 0 chr9 14642773 14642816 -109433356 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 696 723 214 179 6 chr9 14642816 14642995 -109433177 - B3 SINE B2 -2 214 5 2 696 256 296 14 0 chr9 14643035 14643106 -109433066 - ID4_ SINE ID -11 72 1 2 696 1128 69 0 20 chr9 14643180 14643327 -109432845 + B1_Mus1 SINE Alu 4 147 -1 2 696 226 194 28 0 chr9 14643360 14643432 -109432740 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 696 270 0 0 0 chr9 14644397 14644427 -109431745 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 696 284 270 16 0 chr9 14644918 14644981 -109431191 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 696 360 0 0 0 chr9 14644983 14645023 -109431149 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 696 971 55 47 0 chr9 14645023 14645150 -109431022 - B1_Mus2 SINE Alu -13 134 2 2 696 698 315 149 15 chr9 14645166 14645930 -109430242 - L1MA4A LINE L1 -367 5936 5030 2 696 312 242 192 0 chr9 14645934 14646033 -109430139 - RSINE1 SINE B4 -44 121 4 2 696 1655 37 0 0 chr9 14646074 14646265 -109429907 - B2_Mm1t SINE B2 -2 191 1 2 696 300 252 102 39 chr9 14646416 14646544 -109429628 - L1M5 LINE L1 -1121 5025 4890 2 696 279 268 32 24 chr9 14646641 14646767 -109429405 - L1M5 LINE L1 -1383 4763 4637 2 696 2048 163 35 60 chr9 14647139 14647602 -109428570 - RLTR28B LTR ERVL -29 452 2 2 696 534 280 36 16 chr9 14647639 14647831 -109428341 - MTEa LTR MaLR -12 367 172 2 696 2279 135 42 93 chr9 14648393 14648869 -109427303 + RLTR24 LTR ERV1 58 500 -29 2 696 189 0 0 0 chr9 14648869 14648890 -109427282 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 696 2279 135 42 93 chr9 14648890 14648910 -109427262 + RLTR24 LTR ERV1 501 528 -1 2 696 225 301 73 8 chr9 14650545 14650669 -109425503 + L1M5 LINE L1 5525 5656 -468 2 696 339 204 280 0 chr9 14651026 14651158 -109425014 - B3A SINE B2 -28 170 2 2 696 211 234 60 60 chr9 14651574 14651724 -109424448 + (CAGGG)n Simple_repeat Simple_repeat 1 150 0 2 696 22 0 0 0 chr9 14651959 14651981 -109424191 + AT_rich Low_complexity Low_complexity 1 22 0 2 696 210 37 0 0 chr9 14652520 14652547 -109423625 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 696 304 246 220 34 chr9 14652552 14652670 -109423502 - RSINE1 SINE B4 -24 141 2 2 696 256 234 20 50 chr9 14653055 14653154 -109423018 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 2 696 376 322 36 122 chr9 14653156 14653460 -109422712 - B4A SINE B4 0 292 15 2 696 5568 88 22 28 chr9 14653823 14654211 -109421961 + L1VL4 LINE L1 185 586 -5716 2 696 2657 65 53 3 chr9 14654211 14654588 -109421584 + L1_Mus2 LINE L1 6201 6566 0 2 696 19001 69 15 35 chr9 14654588 14657558 -109418614 + L1VL4 LINE L1 587 3512 -47 2 696 1205 29 0 0 chr9 14657558 14657696 -109418476 + B1_Mm SINE Alu 1 138 -9 2 696 19001 67 14 35 chr9 14657696 14657772 -109418400 + L1VL4 LINE L1 3513 3558 -1 2 696 714 311 79 22 chr9 14657802 14658029 -109418143 + B4 SINE B4 42 281 -11 2 696 291 54 0 0 chr9 14658039 14658076 -109418096 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 696 393 22 0 0 chr9 14658076 14658121 -109418051 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 696 367 341 8 0 chr9 14658534 14658663 -109417509 + B1F2 SINE Alu 2 131 -18 2 696 433 293 172 65 chr9 14658903 14659355 -109416817 + MLT2B3 LTR ERVL 1 505 -49 2 696 1149 226 142 15 chr9 14659355 14659687 -109416485 + ORR1D1 LTR MaLR 1 374 0 2 696 360 0 0 0 chr9 14659695 14659735 -109416437 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 696 333 0 0 0 chr9 14659736 14659773 -109416399 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 696 433 293 172 65 chr9 14659773 14659802 -109416370 + MLT2B3 LTR ERVL 517 545 -9 2 696 1957 134 128 0 chr9 14659922 14660257 -109415915 - ORR1C1 LTR MaLR 0 378 1 2 696 22 0 0 0 chr9 14660310 14660332 -109415840 + AT_rich Low_complexity Low_complexity 1 22 0 2 696 237 197 0 0 chr9 14661207 14661283 -109414889 + GA-rich Low_complexity Low_complexity 1 76 0 2 696 1058 264 64 66 chr9 14661435 14662342 -109413830 - RLTR19-int LTR ERVK -2168 3969 2627 2 696 415 227 173 30 chr9 14662969 14663193 -109412979 - RLTR19-int LTR ERVK -3251 2886 2714 2 696 266 297 127 33 chr9 14663653 14663803 -109412369 - RodERV21-int LTR ERV1 -4135 856 693 2 696 202 222 22 0 chr9 14665550 14665595 -109410577 + CT-rich Low_complexity Low_complexity 1 46 0 2 696 467 33 16 0 chr9 14666159 14666220 -109409952 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 2 696 429 20 0 0 chr9 14666944 14666994 -109409178 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 2 696 273 250 0 0 chr9 14668612 14668688 -109407484 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 696 211 299 196 7 chr9 14668842 14668980 -109407192 - MIRb SINE MIR -84 184 21 2 696 748 200 189 0 chr9 14669916 14670101 -109406071 - URR1B DNA MER1_type -1 224 5 2 696 323 340 50 6 chr9 14670388 14670548 -109405624 + L3 LINE CR1 4275 4441 -48 2 696 329 75 19 0 chr9 14672303 14672356 -109403816 + (TTCA)n Simple_repeat Simple_repeat 3 56 0 2 696 261 139 0 0 chr9 14673757 14673800 -109402372 + (A)n Simple_repeat Simple_repeat 1 43 0 2 696 182 345 0 0 chr9 14675834 14675892 -109400280 - MIRm SINE MIR -128 148 91 2 696 926 292 12 94 chr9 14676311 14676615 -109399557 + MTEa LTR MaLR 62 339 -40 2 696 4365 114 91 102 chr9 14676615 14677531 -109398641 + RMER17A2 LTR ERVK 1 906 0 2 696 926 292 12 94 chr9 14677531 14677566 -109398606 + MTEa LTR MaLR 340 373 -6 2 696 655 330 60 41 chr9 14678432 14678796 -109397376 + Lx8 LINE L1 6962 7332 -141 2 696 235 98 0 89 chr9 14678759 14678804 -109397368 + RMER1C Other Other 1167 1207 -135 2 696 274 321 72 79 chr9 14678993 14679270 -109396902 - HAL1 LINE L1 -689 1818 1544 2 696 752 272 164 51 chr9 14679270 14679702 -109396470 - MLT1D LTR MaLR 0 505 22 2 10 3463 40 0 2 chr9 14679702 14680099 -109396073 - MTA_Mm LTR MaLR 0 396 1 2 697 752 272 164 51 chr9 14680099 14680116 -109396056 - MLT1D LTR MaLR -484 21 5 2 697 1007 233 80 102 chr9 14681139 14681541 -109394631 + RLTR9C LTR ERVK 1 393 0 2 697 849 171 204 0 chr9 14681672 14681848 -109394324 - B3 SINE B2 -4 212 1 2 697 250 295 60 35 chr9 14682214 14682330 -109393842 - B1F SINE Alu -29 120 2 2 697 516 132 0 0 chr9 14682535 14682618 -109393554 + (TCC)n Simple_repeat Simple_repeat 3 85 0 2 697 860 132 249 39 chr9 14682678 14682859 -109393313 - URR1B DNA MER1_type -2 223 5 2 697 649 14 173 0 chr9 14683503 14683642 -109392530 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 2 697 1530 53 0 16 chr9 14683720 14683911 -109392261 - B2_Mm2 SINE B2 -7 188 1 2 697 352 106 45 0 chr9 14684096 14684162 -109392010 + A-rich Low_complexity Low_complexity 2 70 0 2 697 1220 61 0 0 chr9 14684446 14684593 -109391579 + B1_Mus2 SINE Alu 1 147 0 2 697 225 0 0 0 chr9 14684593 14684618 -109391554 + (A)n Simple_repeat Simple_repeat 1 25 0 2 697 867 194 0 30 chr9 14684625 14684790 -109391382 - B3 SINE B2 -15 201 42 2 697 4452 174 108 16 chr9 14685189 14686020 -109390152 + RMER13B LTR ERVK 1 908 0 2 697 9536 209 65 14 chr9 14686058 14687957 -109388215 - MERVK26-int LTR ERVK -1 6918 4922 2 697 1820 269 65 52 chr9 14688045 14688310 -109387862 + L1MC1 LINE L1 5579 5838 -495 2 697 664 209 147 16 chr9 14688310 14688500 -109387672 + B3 SINE B2 1 215 -1 2 697 1820 269 65 52 chr9 14688500 14688971 -109387201 + L1MC1 LINE L1 5839 6325 -8 2 697 619 259 168 22 chr9 14689157 14689425 -109386747 - MLT1B LTR MaLR -75 315 9 3 697 228 278 19 0 chr9 14689794 14689848 -109386324 + Tigger12A DNA MER2_type 737 791 0 3 697 22 56 0 0 chr9 14690143 14690179 -109385993 + AT_rich Low_complexity Low_complexity 1 36 0 3 697 194 395 30 15 chr9 14690311 14690442 -109385730 + L3b LINE CR1 218 350 -132 3 697 212 218 351 9 chr9 14690661 14690772 -109385400 + MIRb SINE MIR 117 265 -3 3 697 917 267 74 89 chr9 14690893 14691218 -109384954 - ORR1E LTR MaLR -2 357 38 3 697 483 234 82 123 chr9 14692199 14692418 -109383754 - MTEa LTR MaLR -1 378 169 3 697 396 0 0 0 chr9 14692434 14692478 -109383694 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 697 1779 203 62 63 chr9 14692500 14692971 -109383201 - RMER1B Other Other -477 589 228 3 697 283 291 0 34 chr9 14692971 14693060 -109383112 - MTEa LTR MaLR -191 188 103 3 697 1035 189 112 65 chr9 14693961 14694239 -109381933 - B4 SINE B4 0 292 2 3 697 340 269 137 34 chr9 14694496 14694642 -109381530 - MER21B LTR ERV1 -692 171 11 3 697 215 343 74 0 chr9 14694854 14694985 -109381187 + MIRc SINE MIR 15 162 -106 3 697 407 297 101 7 chr9 14696033 14696182 -109379990 + MLT1F2 LTR MaLR 380 542 -18 3 697 576 286 112 54 chr9 14696276 14696572 -109379600 + MER89 LTR ERV1 224 536 -23 3 697 742 161 42 0 chr9 14697244 14697387 -109378785 - MTEb LTR MaLR 0 379 231 3 697 967 272 93 96 chr9 14697387 14698004 -109378168 - RLTR18B LTR ERVK -4 612 12 3 697 438 189 282 17 chr9 14698024 14698201 -109377971 - MTEb LTR MaLR -141 238 15 3 697 678 237 0 7 chr9 14699044 14699184 -109376988 - RMER30 DNA MER1_type -1 201 63 3 697 408 195 226 75 chr9 14699194 14699327 -109376845 - B3A SINE B2 0 198 46 3 697 273 211 66 66 chr9 14699311 14699387 -109376785 - RMER30 DNA MER1_type -121 81 6 3 697 306 306 114 36 chr9 14701361 14701527 -109374645 - B3A SINE B2 -17 181 3 3 697 374 301 75 27 chr9 14701528 14701798 -109374374 + MER89 LTR ERV1 252 559 0 3 697 283 314 102 31 chr9 14701911 14702233 -109373939 + HAL1 LINE L1 816 1160 -1347 3 697 230 215 261 0 chr9 14703187 14703252 -109372920 - B1F1 SINE Alu -67 82 1 3 697 347 231 31 0 chr9 14703912 14703977 -109372195 + BC1_Mm scRNA scRNA 5 71 -81 3 697 622 248 144 5 chr9 14704062 14704257 -109371915 + ID_B1 SINE B4 3 224 0 3 697 261 0 0 0 chr9 14704278 14704307 -109371865 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 697 1057 233 56 30 chr9 14705454 14705720 -109370452 - B4 SINE B4 -18 274 2 3 697 234 62 0 0 chr9 14705724 14705756 -109370416 + (CAT)n Simple_repeat Simple_repeat 1 32 0 3 697 291 333 83 8 chr9 14705759 14705880 -109370292 - MIRb SINE MIR -120 148 19 3 697 189 0 0 0 chr9 14707244 14707265 -109368907 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 697 200 239 146 11 chr9 14708365 14708454 -109367718 + MIR SINE MIR 53 153 -55 3 697 181 237 67 17 chr9 14709662 14709722 -109366450 + L3b LINE CR1 199 261 -221 3 697 277 303 188 0 chr9 14710405 14710613 -109365559 - L1ME2z LINE L1 -24 6420 6174 3 697 835 133 16 0 chr9 14710773 14710901 -109365271 - B3 SINE B2 -86 130 1 3 697 308 279 16 105 chr9 14710984 14711108 -109365064 - RSINE1 SINE B4 0 165 53 3 697 331 307 83 25 chr9 14712013 14712170 -109364002 + RLTR23 LTR ERV1 265 430 0 3 697 210 234 25 38 chr9 14712255 14712335 -109363837 + CT-rich Low_complexity Low_complexity 1 79 0 3 697 183 129 0 0 chr9 14712358 14712389 -109363783 + (TC)n Simple_repeat Simple_repeat 1 31 0 3 697 263 291 81 41 chr9 14712848 14713045 -109363127 + L2b LINE L2 1953 2157 -1262 3 697 1644 46 0 0 chr9 14713174 14713368 -109362804 + L1Md_F2 LINE L1 5393 5586 -297 3 697 8354 34 4 5 chr9 14713368 14714361 -109361811 + L1Md_F2 LINE L1 5587 6578 -4 3 697 186 348 60 35 chr9 14714441 14714557 -109361615 + L2b LINE L2 2485 2603 -816 3 697 299 384 112 43 chr9 14714615 14715007 -109361165 + L2b LINE L2 2957 3375 0 3 697 186 228 16 66 chr9 14715191 14715252 -109360920 + L3 LINE CR1 888 945 -3544 3 697 194 57 0 54 chr9 14715831 14715868 -109360304 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 697 883 132 102 2 chr9 14715908 14716091 -109360081 - B2_Mm2 SINE B2 -3 213 6 3 697 688 250 0 8 chr9 14716211 14716344 -109359828 - RSINE1 SINE B4 0 165 34 3 697 4746 75 21 2 chr9 14717398 14718021 -109358151 - L1_Mus2 LINE L1 0 6566 5932 3 697 4588 73 0 4 chr9 14718021 14718669 -109357503 + L1_Mus2 LINE L1 5296 5938 -628 3 697 960 179 57 32 chr9 14718689 14718937 -109357235 - Lx9 LINE L1 -26 7618 7365 3 697 4456 207 53 11 chr9 14718964 14719898 -109356274 - Lx9 LINE L1 -508 7136 6163 3 697 440 292 38 19 chr9 14720928 14721085 -109355087 - B4A SINE B4 -21 271 112 3 697 715 248 113 29 chr9 14721486 14721690 -109354482 + ID_B1 SINE B4 4 224 0 3 697 345 316 25 22 chr9 14721858 14722082 -109354090 - L1M4b LINE L1 -4531 2571 2343 3 697 651 202 0 0 chr9 14722100 14722345 -109353827 + (TG)n Simple_repeat Simple_repeat 1 245 0 3 697 441 297 184 13 chr9 14722396 14722635 -109353537 - B4A SINE B4 -2 290 11 3 697 434 256 237 27 chr9 14722662 14723076 -109353096 - L1M4b LINE L1 -5145 2189 1685 3 697 459 0 0 0 chr9 14723736 14723787 -109352385 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 697 1854 160 96 28 chr9 14724679 14725033 -109351139 + ORR1C1 LTR MaLR 1 378 0 3 697 320 316 109 42 chr9 14725488 14725726 -109350446 + MLT1A LTR MaLR 113 366 -8 3 697 223 112 69 80 chr9 14725845 14726020 -109350152 + (ACTG)n Simple_repeat Simple_repeat 3 175 0 3 697 215 23 91 0 chr9 14726302 14726346 -109349826 + (TTG)n Simple_repeat Simple_repeat 1 48 0 3 697 357 256 11 87 chr9 14726908 14727092 -109349080 + CT-rich Low_complexity Low_complexity 2 171 0 3 697 412 276 3 81 chr9 14727106 14727358 -109348814 + CT-rich Low_complexity Low_complexity 1 232 0 3 697 210 325 25 8 chr9 14727304 14727422 -109348750 + C-rich Low_complexity Low_complexity 4 123 0 3 697 397 235 0 105 chr9 14727403 14727593 -109348579 + CT-rich Low_complexity Low_complexity 2 171 0 3 697 202 290 0 0 chr9 14727678 14727747 -109348425 + T-rich Low_complexity Low_complexity 1 69 0 3 697 369 238 0 0 chr9 14728567 14728647 -109347525 + ID4_ SINE ID 3 82 -1 3 697 410 263 241 54 chr9 14728846 14729087 -109347085 + B4 SINE B4 3 288 -4 3 697 207 0 0 0 chr9 14729876 14729899 -109346273 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 697 1141 68 0 14 chr9 14729899 14730038 -109346134 - B1_Mus1 SINE Alu -9 139 1 3 697 1872 173 63 98 chr9 14730414 14730812 -109345360 + ORR1C2 LTR MaLR 1 384 0 3 697 225 352 0 11 chr9 14731052 14731141 -109345031 + GA-rich Low_complexity Low_complexity 3 90 0 3 697 299 352 85 38 chr9 14731691 14731927 -109344245 + MIR SINE MIR 6 252 -10 3 697 8752 71 5 8 chr9 14732310 14733288 -109342884 - L1Md_F2 LINE L1 0 6582 5606 3 697 4365 12 0 4 chr9 14733288 14733772 -109342400 + LTRIS_Mm LTR ERV1 1 482 0 3 697 8752 62 0 6 chr9 14733772 14734586 -109341586 - L1Md_F2 LINE L1 -278 5605 4794 3 697 384 352 115 0 chr9 14734696 14734835 -109341337 + RSINE1 SINE B4 11 165 0 3 697 309 225 0 0 chr9 14734838 14734958 -109341214 + (CA)n Simple_repeat Simple_repeat 2 121 0 3 697 398 276 3 0 chr9 14735009 14735334 -109340838 + (CA)n Simple_repeat Simple_repeat 1 326 0 3 697 214 125 0 40 chr9 14735404 14735454 -109340718 + CT-rich Low_complexity Low_complexity 1 48 0 3 697 201 18 67 67 chr9 14735514 14735574 -109340598 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 3 697 1213 61 0 0 chr9 14735574 14735722 -109340450 - B1_Mus1 SINE Alu 0 148 1 3 697 973 256 172 59 chr9 14735843 14736303 -109339869 + RLTR18B LTR ERVK 1 512 0 3 697 275 253 148 49 chr9 14736713 14736896 -109339276 + MIRc SINE MIR 37 237 -31 3 697 8490 42 4 2 chr9 14737343 14738808 -109337364 - L1Md_F3 LINE L1 0 6584 5115 3 697 4391 40 0 0 chr9 14738808 14739327 -109336845 + L1Md_F3 LINE L1 4597 5115 -768 3 697 1129 237 163 97 chr9 14740149 14740654 -109335518 + RLTR18 LTR ERVK 9 556 -60 3 697 1214 94 66 6 chr9 14740654 14740675 -109335497 - B2_Mm2 SINE B2 -1 194 162 3 697 204 40 0 0 chr9 14740675 14740700 -109335472 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 3 697 1214 94 66 6 chr9 14740700 14740860 -109335312 - B2_Mm2 SINE B2 -34 161 2 3 697 1129 237 163 97 chr9 14740860 14740924 -109335248 + RLTR18 LTR ERVK 557 616 0 3 697 361 224 26 0 chr9 14741906 14741982 -109334190 - ID_B1 SINE B4 -130 94 17 3 697 306 0 0 0 chr9 14742020 14742054 -109334118 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 697 219 245 255 41 chr9 14742056 14742154 -109334018 - ID_B1 SINE B4 -13 211 93 3 697 357 145 0 0 chr9 14742547 14742617 -109333555 + RLTR16 LTR ERVK 1 98 -470 3 697 347 245 10 50 chr9 14742617 14742716 -109333456 + MYSERV16_I-int LTR ERVK 591 685 -1641 3 697 239 221 121 16 chr9 14742912 14743036 -109333136 - Lx8 LINE L1 -2 7471 7335 3 697 30 45 0 0 chr9 14743081 14743125 -109333047 + AT_rich Low_complexity Low_complexity 1 44 0 3 697 360 0 0 0 chr9 14743149 14743189 -109332983 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 697 236 285 151 16 chr9 14743268 14743446 -109332726 - B4A SINE B4 -76 216 2 3 697 318 50 0 0 chr9 14743978 14744018 -109332154 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 3 697 463 29 52 94 chr9 14744520 14745404 -109330768 + (CTGTG)n Simple_repeat Simple_repeat 1 846 0 3 697 438 328 23 15 chr9 14745622 14745752 -109330420 - B4A SINE B4 -12 280 150 3 697 420 130 0 0 chr9 14745859 14745928 -109330244 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 697 603 271 73 0 chr9 14746350 14746501 -109329671 - B4 SINE B4 -8 284 123 3 697 1151 168 113 0 chr9 14747578 14747781 -109328391 - URR1A DNA MER1_type 0 226 1 3 697 381 43 0 0 chr9 14748161 14748208 -109327964 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 697 313 317 120 12 chr9 14748334 14748660 -109327512 + L1M4 LINE L1 5007 5367 -779 3 697 627 212 0 0 chr9 14748782 14748895 -109327277 + PB1D9 SINE Alu 1 113 -7 3 697 42 48 0 0 chr9 14748979 14749042 -109327130 + AT_rich Low_complexity Low_complexity 1 63 0 3 697 1116 54 0 0 chr9 14749155 14749302 -109326870 + B1_Mus1 SINE Alu 2 148 0 3 697 198 0 0 0 chr9 14749436 14749458 -109326714 + (T)n Simple_repeat Simple_repeat 1 22 0 3 697 199 79 53 0 chr9 14749569 14749607 -109326565 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 697 245 324 98 0 chr9 14749609 14749782 -109326390 + L1M4 LINE L1 5586 5775 -404 3 697 830 203 0 13 chr9 14750930 14751080 -109325092 + B1_Mur4 SINE Alu 3 150 0 4 697 964 262 108 16 chr9 14751186 14751492 -109324680 + ORR1E LTR MaLR 26 359 0 4 697 2078 250 50 184 chr9 14751498 14752239 -109323933 + ORR1E-int LTR MaLR 5 574 -1006 4 697 585 263 59 38 chr9 14752239 14752425 -109323747 + B3A SINE B2 2 191 -7 4 697 2078 250 50 184 chr9 14752425 14752723 -109323449 + ORR1E-int LTR MaLR 575 905 -675 4 697 450 295 25 13 chr9 14754284 14754442 -109321730 + MIR SINE MIR 12 171 -91 4 697 1275 243 80 9 chr9 14754442 14754779 -109321393 + MTEb LTR MaLR 4 364 -15 4 697 250 296 116 43 chr9 14756040 14756178 -109319994 - RSINE1 SINE B4 -15 150 3 4 697 451 333 39 22 chr9 14756229 14756410 -109319762 - MLT1F2 LTR MaLR -8 552 369 4 697 231 304 0 0 chr9 14756800 14756856 -109319316 + CT-rich Low_complexity Low_complexity 4 59 0 4 697 335 287 0 0 chr9 14757209 14757303 -109318869 - PB1D10 SINE Alu -23 94 1 4 697 237 272 37 12 chr9 14757701 14757783 -109318389 + L1MD3 LINE L1 7891 7974 -21 4 697 385 232 26 35 chr9 14757838 14757954 -109318218 - B4A SINE B4 -6 286 172 4 697 213 288 88 26 chr9 14757966 14758080 -109318092 - B4 SINE B4 -170 122 2 4 697 503 276 98 23 chr9 14758466 14758640 -109317532 + B3A SINE B2 2 188 -10 4 697 885 241 57 133 chr9 14758859 14759212 -109316960 - MTD LTR MaLR -20 399 96 4 697 1402 148 5 276 chr9 14759212 14759774 -109316398 - RMER17C LTR ERVK 0 410 1 4 697 885 240 55 138 chr9 14759774 14759868 -109316304 - MTD LTR MaLR -324 95 2 4 697 799 262 77 91 chr9 14760010 14760350 -109315822 - RMER20B LTR ERVK -38 589 255 4 697 346 192 288 15 chr9 14760366 14760498 -109315674 - RMER20B LTR ERVK -459 168 1 4 697 1634 147 46 10 chr9 14761256 14761558 -109314614 - ORR1A4 LTR MaLR -16 313 1 4 697 990 180 10 10 chr9 14762283 14762479 -109313693 + RLTR31A_Mm LTR ERVK 1 196 -388 4 697 276 30 0 0 chr9 14762484 14762517 -109313655 + (A)n Simple_repeat Simple_repeat 1 33 0 4 697 1065 138 57 3 chr9 14762518 14762732 -109313440 + RLTR31A_Mm LTR ERVK 150 394 -190 4 697 227 220 0 33 chr9 14762810 14762871 -109313301 + RLTR31A_Mm LTR ERVK 526 584 0 4 697 529 118 0 0 chr9 14762873 14762949 -109313223 - tRNA-Lys-AAG tRNA tRNA 0 76 1 4 697 659 176 26 45 chr9 14763273 14763428 -109312744 + RLTR42-int LTR ERVK 4282 4433 -1089 4 697 278 333 42 14 chr9 14764368 14764511 -109311661 - LTR29 LTR ERV1 -366 256 110 4 697 233 291 22 34 chr9 14764564 14764653 -109311519 - MTEb LTR MaLR -14 365 278 4 697 1289 219 10 27 chr9 14765219 14765519 -109310653 - MERVK26-int LTR ERVK -5723 1196 902 4 697 2015 161 107 40 chr9 14765539 14765776 -109310396 - MERVK26-int LTR ERVK -6470 449 191 4 697 6186 60 96 23 chr9 14765776 14766191 -109309981 + RLTR13B1 LTR ERVK 1 461 -432 4 697 360 43 0 0 chr9 14766191 14766237 -109309935 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 697 6186 60 96 23 chr9 14766237 14766653 -109309519 + RLTR13B1 LTR ERVK 462 892 -1 4 697 2015 161 107 40 chr9 14766653 14766835 -109309337 - MERVK26-int LTR ERVK -6729 190 2 4 697 835 281 130 91 chr9 14766840 14767454 -109308718 - RLTR26 LTR ERVK -4 638 1 4 697 263 317 50 0 chr9 14767466 14767567 -109308605 + MLT1A0 LTR MaLR 225 330 -35 4 697 1380 80 32 0 chr9 14767889 14768077 -109308095 - B2_Mm2 SINE B2 0 195 2 4 697 266 263 8 33 chr9 14768100 14768222 -109307950 + (TTCA)n Simple_repeat Simple_repeat 4 122 0 4 697 234 225 195 62 chr9 14768249 14768377 -109307795 + LTR37A LTR ERV1 280 424 -2 4 697 306 73 0 0 chr9 14768383 14768424 -109307748 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 697 2744 164 33 15 chr9 14768836 14769355 -109306817 - RLTR11A LTR ERVK 0 528 1 4 697 635 258 77 17 chr9 14769796 14769977 -109306195 - B3A SINE B2 -5 193 2 4 697 692 253 67 73 chr9 14770050 14770365 -109305807 + L1ME3A LINE L1 5588 5900 -273 4 697 1148 168 22 14 chr9 14771670 14771893 -109304279 + URR1A DNA MER1_type 2 226 0 4 697 1318 321 75 19 chr9 14771922 14772510 -109303662 - Lx8 LINE L1 -9 7464 6844 4 697 747 241 18 12 chr9 14772521 14772689 -109303483 - Lx8 LINE L1 -685 6788 6620 4 697 183 156 0 0 chr9 14772773 14772805 -109303367 + CT-rich Low_complexity Low_complexity 2 33 0 4 697 1619 200 16 23 chr9 14772805 14773246 -109302926 + RLTR20B1 LTR ERVK 1 558 -5 4 697 1522 162 4 25 chr9 14773245 14773524 -109302648 - RLTR13C1 LTR ERVK -710 273 1 4 697 323 244 111 0 chr9 14773686 14773776 -109302396 + B4A SINE B4 107 206 -86 4 697 234 0 0 0 chr9 14773780 14773806 -109302366 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 697 1374 57 0 0 chr9 14773806 14773981 -109302191 + (GA)n Simple_repeat Simple_repeat 1 176 0 4 697 426 255 0 10 chr9 14774343 14774442 -109301730 - RMER4B LTR ERVK -143 442 345 4 697 5562 249 49 44 chr9 14774449 14776109 -109300063 - RodERV21-int LTR ERV1 -167 4824 3157 4 697 586 242 74 9 chr9 14776639 14776868 -109299304 + L1_Mur3 LINE L1 863 1106 -6622 4 697 675 0 0 0 chr9 14776872 14776947 -109299225 + (GAA)n Simple_repeat Simple_repeat 1 75 0 4 697 6559 177 45 20 chr9 14776952 14778549 -109297623 + L1_Mur3 LINE L1 1205 2901 -2985 4 697 578 185 7 100 chr9 14779665 14779815 -109296357 + L1_Mur3 LINE L1 2888 3023 -2857 4 697 274 304 8 74 chr9 14779815 14779900 -109296272 - RMER4B LTR ERVK 0 585 504 4 697 6453 80 2 11 chr9 14779900 14780761 -109295411 - L1_Mus3 LINE L1 0 6638 5785 4 697 274 304 8 74 chr9 14780761 14780796 -109295376 - RMER4B LTR ERVK -82 503 474 4 697 4144 144 38 7 chr9 14780796 14781285 -109294887 + L1_Mm LINE L1 5032 5531 -352 4 697 4917 56 2 3 chr9 14781285 14781873 -109294299 - LTRIS_Mus LTR ERV1 0 587 1 4 697 4144 144 38 7 chr9 14781873 14782098 -109294074 + L1_Mm LINE L1 5532 5768 -115 4 697 3350 128 12 8 chr9 14782099 14782617 -109293555 - RMER4B LTR ERVK -50 535 16 4 697 1896 147 6 3 chr9 14782624 14782944 -109293228 - MurERV4-int LTR ERVK -1 5259 4939 4 697 653 225 94 11 chr9 14783032 14783212 -109292960 + Lx6 LINE L1 7265 7459 -1 4 697 2755 224 75 26 chr9 14784503 14785194 -109290978 - RodERV21-int LTR ERV1 -2274 2717 1993 4 697 2003 181 26 8 chr9 14785192 14785571 -109290601 - RodERV21-int LTR ERV1 -3243 1748 1363 4 697 266 169 108 40 chr9 14785891 14785965 -109290207 - RLTR19-int LTR ERVK -5160 977 899 4 697 323 250 0 0 chr9 14786004 14786084 -109290088 - MYSERV6-int LTR ERVK -1868 7091 7012 4 697 835 228 80 5 chr9 14786105 14786317 -109289855 - RLTR42-int LTR ERVK -4191 1331 1104 4 697 2811 185 138 36 chr9 14786562 14786811 -109289361 - RodERV21-int LTR ERV1 -4006 985 699 4 697 204 40 0 0 chr9 14786811 14786836 -109289336 + (TGGGGG)n Simple_repeat Simple_repeat 4 28 0 4 697 2811 185 138 36 chr9 14786836 14787344 -109288828 - RodERV21-int LTR ERV1 -4293 698 151 4 697 546 29 0 0 chr9 14788226 14788294 -109287878 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 697 241 290 43 14 chr9 14788295 14788365 -109287807 - ID2 SINE ID -11 72 1 4 697 313 252 133 19 chr9 14788374 14788479 -109287693 - PB1D10 SINE Alu 0 117 1 4 697 3920 198 41 70 chr9 14789514 14789905 -109286267 + RMER17B LTR ERVK 5 417 -541 4 697 3604 20 0 0 chr9 14789905 14790301 -109285871 + MTA_Mm LTR MaLR 1 396 0 4 697 9599 22 4 0 chr9 14790301 14791395 -109284777 + MTA_Mm-int LTR MaLR 1 1098 0 4 697 3604 20 0 0 chr9 14791395 14791791 -109284381 + MTA_Mm LTR MaLR 1 396 0 4 697 3920 198 41 70 chr9 14791791 14792367 -109283805 + RMER17B LTR ERVK 418 944 -14 4 697 339 352 107 60 chr9 14792461 14792694 -109283478 - ORR1E LTR MaLR -5 354 111 4 697 562 286 93 0 chr9 14792733 14792915 -109283257 + RCHARR1 DNA MER1_type 57 255 -719 4 697 255 251 45 51 chr9 14792941 14793117 -109283055 + (CACAC)n Simple_repeat Simple_repeat 3 177 0 4 697 231 268 52 29 chr9 14793238 14793465 -109282707 + (CACAC)n Simple_repeat Simple_repeat 1 232 0 4 697 221 233 93 27 chr9 14793370 14793520 -109282652 + (CATGC)n Simple_repeat Simple_repeat 1 160 0 4 697 865 229 86 4 chr9 14793690 14793923 -109282249 + RCHARR1 DNA MER1_type 210 461 -513 4 697 728 174 280 6 chr9 14793933 14794101 -109282071 + B3 SINE B2 3 216 0 4 697 1000 195 25 25 chr9 14794102 14794339 -109281833 + RCHARR1 DNA MER1_type 735 971 -3 4 697 248 278 97 0 chr9 14794343 14794415 -109281757 - ORR1E LTR MaLR -259 100 22 4 697 374 317 52 47 chr9 14794930 14795162 -109281010 - L1M3c LINE L1 -4297 2552 2320 4 697 255 274 103 0 chr9 14795387 14795504 -109280668 - L1M3c LINE L1 -4686 2083 1955 4 697 243 25 0 0 chr9 14795497 14795537 -109280635 + L1_Mus4 LINE L1 6591 6630 -6 4 697 1977 152 123 24 chr9 14795575 14795958 -109280214 + MTC LTR MaLR 1 421 0 4 697 581 272 163 34 chr9 14796216 14796381 -109279791 - L1M3c LINE L1 -4934 1845 1643 4 697 342 0 0 0 chr9 14796381 14796419 -109279753 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 697 1413 82 0 6 chr9 14796419 14796602 -109279570 - B2_Mm2 SINE B2 -13 182 1 4 697 581 281 126 29 chr9 14796602 14796839 -109279333 - L1M3c LINE L1 -5137 1642 1349 4 697 1192 281 68 46 chr9 14796943 14797398 -109278774 - MT2A LTR ERVL -65 468 4 4 697 2919 197 145 49 chr9 14798482 14798595 -109277577 - RMER1A Other Other -5 1025 912 4 697 192 40 0 0 chr9 14798595 14798620 -109277552 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 697 2919 197 145 49 chr9 14798620 14799308 -109276864 - RMER1A Other Other -119 911 147 4 697 387 336 14 42 chr9 14799530 14799673 -109276499 - MLT1A0 LTR MaLR -47 318 180 4 697 360 0 0 0 chr9 14799673 14799713 -109276459 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 697 225 223 32 0 chr9 14801619 14801713 -109274459 + CT-rich Low_complexity Low_complexity 4 100 0 4 697 533 293 184 0 chr9 14802557 14802731 -109273441 + ID_B1 SINE B4 5 210 -14 4 697 186 43 0 0 chr9 14802736 14802759 -109273413 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 4 697 281 354 43 52 chr9 14803451 14803687 -109272485 - B4A SINE B4 -16 276 36 4 697 929 232 140 16 chr9 14805105 14805420 -109270752 + ORR1D2 LTR MaLR 5 358 -12 4 697 394 304 79 38 chr9 14805984 14806178 -109269994 + MLT1E1A LTR MaLR 356 680 0 4 697 188 315 19 0 chr9 14806214 14806268 -109269904 - MIR SINE MIR -10 252 198 4 697 189 0 0 0 chr9 14806941 14806962 -109269210 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 4 697 887 181 7 7 chr9 14806997 14807142 -109269030 + B1_Mus2 SINE Alu 1 145 -2 4 697 260 104 80 40 chr9 14807153 14807203 -109268969 + B1_Mur4 SINE Alu 90 141 -9 4 697 256 296 33 42 chr9 14809463 14809583 -109266589 + PB1D7 SINE Alu 2 120 0 4 697 230 235 111 56 chr9 14810517 14810643 -109265529 - MTA_Mm LTR MaLR -78 318 186 4 87 1475 252 68 23 chr9 14810841 14811312 -109264860 + Lx8 LINE L1 6622 7113 -360 4 698 256 295 104 43 chr9 14811344 14811507 -109264665 + Lx8 LINE L1 7299 7471 -2 4 698 891 147 21 7 chr9 14812625 14812769 -109263403 + B1_Mus1 SINE Alu 3 148 0 4 698 352 181 500 0 chr9 14812824 14812962 -109263210 - B3 SINE B2 -9 207 1 4 698 234 278 88 49 chr9 14813338 14813353 -109262819 + MamGypLTR1c LTR Gypsy 594 612 -191 4 698 1335 247 40 25 chr9 14813353 14813677 -109262495 + MTD LTR MaLR 1 329 -90 4 698 519 216 25 64 chr9 14813646 14813781 -109262391 - MTD LTR MaLR -13 406 208 4 698 384 200 13 0 chr9 14813943 14814018 -109262154 + MTD LTR MaLR 336 411 -8 4 698 192 40 0 0 chr9 14816119 14816144 -109260028 + (T)n Simple_repeat Simple_repeat 1 25 0 4 698 502 292 118 6 chr9 14816144 14816313 -109259859 - Charlie4a DNA MER1_type -77 431 244 4 698 288 0 0 0 chr9 14816776 14816808 -109259364 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 4 698 925 191 36 36 chr9 14816808 14817003 -109259169 - B2_Mm2 SINE B2 0 195 1 4 698 236 214 0 0 chr9 14817971 14818027 -109258145 + B3 SINE B2 157 212 -4 4 698 1023 232 62 161 chr9 14819330 14819751 -109256421 + MTE2a LTR MaLR 1 379 0 5 698 202 292 86 62 chr9 14819862 14819990 -109256182 - MER5A DNA MER1_type -18 171 41 5 698 433 263 137 31 chr9 14820955 14821116 -109255056 - B3A SINE B2 -10 188 11 5 698 346 266 152 39 chr9 14821223 14821456 -109254716 - MLT1C LTR MaLR -132 258 7 5 698 523 301 61 40 chr9 14821604 14821832 -109254340 + MTD LTR MaLR 1 233 -186 5 698 442 360 0 0 chr9 14821959 14822134 -109254038 + (GCCTAA)n Simple_repeat Simple_repeat 6 180 0 5 698 460 230 86 14 chr9 14822188 14822348 -109253824 + MTD LTR MaLR 214 405 -14 5 698 320 219 14 0 chr9 14822519 14822592 -109253580 - MTE2a LTR MaLR -4 375 302 5 698 948 90 21 7 chr9 14823174 14823319 -109252853 - URR1A DNA MER1_type 0 226 80 5 698 297 322 98 33 chr9 14823949 14824132 -109252040 - L1MEg LINE L1 -5404 680 486 5 698 441 0 0 0 chr9 14824243 14824292 -109251880 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 5 698 762 250 103 9 chr9 14826067 14826281 -109249891 + RCHARR1 DNA MER1_type 5 238 -736 5 698 1241 206 185 0 chr9 14826356 14826681 -109249491 + MTD LTR MaLR 20 404 -15 5 698 543 194 96 7 chr9 14826695 14826830 -109249342 + RCHARR1 DNA MER1_type 309 455 -519 5 698 821 76 59 0 chr9 14827376 14827494 -109248678 - B3 SINE B2 -86 130 6 5 698 474 289 32 19 chr9 14827478 14827633 -109248539 - B4A SINE B4 -50 242 86 5 698 342 215 65 0 chr9 14827676 14827769 -109248403 - B4 SINE B4 -192 100 2 5 698 1887 183 40 20 chr9 14828066 14828468 -109247704 - RMER17C LTR ERVK 0 410 1 5 698 2076 110 55 10 chr9 14828468 14828529 -109247643 + ORR1A2 LTR MaLR 2 63 -264 5 698 3293 46 5 2 chr9 14828529 14828924 -109247248 + MTA_Mm LTR MaLR 1 396 0 5 698 7863 72 9 72 chr9 14828924 14830095 -109246077 + MTA_Mm-int LTR MaLR 1 1098 0 5 698 3265 56 2 5 chr9 14830095 14830492 -109245680 + MTA_Mm LTR MaLR 1 396 0 5 698 2076 110 55 10 chr9 14830492 14830740 -109245432 + ORR1A2 LTR MaLR 64 325 -2 5 698 351 270 132 64 chr9 14830997 14831189 -109244983 + MIRb SINE MIR 13 227 -41 5 698 403 272 114 40 chr9 14832748 14832924 -109243248 + ORR1E LTR MaLR 1 189 -170 5 698 186 118 0 0 chr9 14833478 14833512 -109242660 + (G)n Simple_repeat Simple_repeat 1 34 0 5 698 231 114 0 0 chr9 14835778 14835813 -109240359 + (T)n Simple_repeat Simple_repeat 1 35 0 5 698 1063 62 0 27 chr9 14835814 14835962 -109240210 - B1_Mus1 SINE Alu 0 148 5 5 698 427 185 85 78 chr9 14835840 14835981 -109240191 - MT2B LTR ERVL -322 279 138 5 698 579 290 92 48 chr9 14836404 14836697 -109239475 + ORR1E LTR MaLR 51 356 -3 5 698 279 79 0 0 chr9 14836817 14836855 -109239317 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 698 452 271 41 13 chr9 14837037 14837194 -109238978 + B4A SINE B4 3 154 -70 5 698 378 74 0 0 chr9 14837295 14837349 -109238823 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 698 659 263 0 59 chr9 14837955 14838141 -109238031 + B4 SINE B4 34 208 -84 5 698 309 82 0 0 chr9 14839537 14839586 -109236586 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 698 532 208 0 74 chr9 14839617 14839789 -109236383 + B1_Mur4 SINE Alu 3 150 0 5 698 340 304 33 0 chr9 14840359 14840451 -109235721 + PB1D10 SINE Alu 18 112 -5 5 698 317 329 18 77 chr9 14840739 14840907 -109235265 + RSINE1 SINE B4 3 160 -5 5 698 405 0 0 0 chr9 14841751 14841796 -109234376 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 698 369 0 0 0 chr9 14841919 14841960 -109234212 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 698 748 207 346 14 chr9 14842221 14842501 -109233671 - ORR1D1 LTR MaLR -1 373 1 5 698 407 231 24 0 chr9 14842783 14842876 -109233296 - MTC LTR MaLR -242 177 83 5 698 7617 52 18 8 chr9 14842899 14843845 -109232327 - L1_Mus1 LINE L1 0 6567 5613 5 698 533 216 0 1 chr9 14843845 14843954 -109232218 - MTC LTR MaLR -288 108 1 5 698 270 0 0 0 chr9 14844169 14844199 -109231973 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 698 554 110 14 51 chr9 14844199 14844296 -109231876 - B1_Mur3 SINE Alu -12 137 17 5 698 440 269 83 16 chr9 14844738 14844859 -109231313 + RSINE1 SINE B4 33 161 -4 5 698 381 93 0 0 chr9 14844887 14844941 -109231231 + (CAA)n Simple_repeat Simple_repeat 1 54 0 5 698 189 0 0 0 chr9 14846585 14846606 -109229566 + (A)n Simple_repeat Simple_repeat 1 21 0 5 698 1812 169 144 0 chr9 14846876 14847224 -109228948 - MTD LTR MaLR -20 399 2 5 698 24 0 0 0 chr9 14849763 14849787 -109226385 + GC_rich Low_complexity Low_complexity 1 24 0 5 698 212 0 36 0 chr9 14850202 14850230 -109225942 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 698 240 265 107 93 chr9 14851189 14851339 -109224833 + L2b LINE L2 3067 3218 -157 5 698 532 282 52 11 chr9 14851947 14852111 -109224061 + ID_B1 SINE B4 54 218 -6 5 698 456 299 54 147 chr9 14852252 14852321 -109223851 - B4A SINE B4 -7 285 221 5 698 435 38 0 0 chr9 14852331 14852384 -109223788 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 5 698 1186 68 0 13 chr9 14852384 14852522 -109223650 - B1_Mus2 SINE Alu -9 138 1 5 698 456 299 54 147 chr9 14852522 14852766 -109223406 - B4A SINE B4 -72 220 1 5 698 307 246 52 78 chr9 14852775 14852929 -109223243 - L1MC3 LINE L1 -16 7769 7620 5 698 280 253 108 108 chr9 14854445 14854538 -109221634 + RMER10B LTR ERVL 272 364 -34 5 698 414 0 0 0 chr9 14854547 14854593 -109221579 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 698 21 36 0 0 chr9 14854597 14854625 -109221547 + AT_rich Low_complexity Low_complexity 1 28 0 5 698 762 228 0 13 chr9 14854628 14854779 -109221393 - B1_Mur3 SINE Alu 0 149 1 5 698 332 230 13 13 chr9 14854817 14854892 -109221280 - ID4 SINE ID -5 78 4 5 698 318 269 136 39 chr9 14854895 14855050 -109221122 - MLT1D LTR MaLR -314 191 22 5 698 306 0 0 0 chr9 14856212 14856246 -109219926 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 698 196 176 188 14 chr9 14857055 14857124 -109219048 - L3 LINE CR1 -4298 191 111 5 698 288 0 0 0 chr9 14858437 14858469 -109217703 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 5 698 190 333 13 13 chr9 14858750 14858829 -109217343 + L2c LINE L2 3246 3324 -63 5 698 671 275 62 81 chr9 14859350 14859624 -109216548 + MLT1F1 LTR MaLR 286 556 -13 5 698 1683 188 25 47 chr9 14859788 14860257 -109215915 + RMER17C LTR ERVK 16 439 -519 5 698 895 237 35 15 chr9 14860294 14860495 -109215677 + B3 SINE B2 6 210 -6 5 698 312 27 0 0 chr9 14860495 14860532 -109215640 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 5 698 768 227 0 14 chr9 14860534 14860677 -109215495 - B1_Mur3 SINE Alu -7 142 2 5 698 290 264 0 167 chr9 14860562 14860694 -109215478 - MT2B LTR ERVL -337 264 155 5 698 502 289 72 63 chr9 14860924 14860939 -109215233 + L1MA6 LINE L1 5936 5949 -351 5 698 1444 89 0 5 chr9 14860939 14861132 -109215040 + B2_Mm2 SINE B2 2 193 -2 5 698 502 289 72 63 chr9 14861132 14861478 -109214694 + L1MA6 LINE L1 5950 6300 0 5 698 180 0 0 0 chr9 14862059 14862079 -109214093 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 698 574 261 30 7 chr9 14862091 14862226 -109213946 - RSINE1 SINE B4 -24 141 4 5 698 200 269 0 69 chr9 14863162 14863234 -109212938 + GA-rich Low_complexity Low_complexity 6 72 0 5 698 264 138 0 44 chr9 14863241 14863309 -109212863 + G-rich Low_complexity Low_complexity 1 65 0 5 698 22 56 0 0 chr9 14864141 14864177 -109211995 + AT_rich Low_complexity Low_complexity 1 36 0 5 698 1294 82 48 26 chr9 14864222 14864411 -109211761 - B2_Mm2 SINE B2 -1 194 2 5 698 597 277 66 26 chr9 14865937 14866089 -109210083 + RSINE1 SINE B4 8 165 0 5 698 666 291 136 32 chr9 14866983 14867299 -109208873 + MTE2b LTR MaLR 20 368 -11 5 698 2379 149 165 14 chr9 14867311 14867801 -109208371 + RLTR12A LTR ERVK 1 564 -4 5 698 307 68 0 110 chr9 14867860 14868042 -109208130 + CT-rich Low_complexity Low_complexity 1 162 0 5 698 279 308 13 13 chr9 14868045 14868124 -109208048 + MER5B DNA MER1_type 63 141 -37 5 698 243 0 0 0 chr9 14868185 14868212 -109207960 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 698 352 281 83 0 chr9 14868231 14868327 -109207845 - PB1D10 SINE Alu -13 104 1 5 698 230 376 82 6 chr9 14868344 14868502 -109207670 + MIRb SINE MIR 93 262 -6 5 698 441 0 0 0 chr9 14868942 14868991 -109207181 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 698 219 329 53 0 chr9 14869278 14869354 -109206818 - PB1D9 SINE Alu -40 80 1 5 698 1213 247 83 40 chr9 14869807 14870147 -109206025 + ORR1D2 LTR MaLR 10 368 -2 5 698 307 270 96 90 chr9 14870257 14870424 -109205748 - B4 SINE B4 0 292 125 5 698 974 245 65 39 chr9 14870439 14870749 -109205423 + L1MC LINE L1 5383 5700 -644 5 698 343 272 53 101 chr9 14870985 14871173 -109204999 + MER104 DNA Tc2 2 180 -1 5 698 214 274 140 16 chr9 14871665 14871789 -109204383 + MIRc SINE MIR 36 178 -98 5 698 1591 190 100 26 chr9 14871895 14872235 -109203937 + ORR1D2 LTR MaLR 1 365 -5 5 698 827 256 115 56 chr9 14872397 14872719 -109203453 + MTE2a LTR MaLR 1 341 -38 5 698 294 143 0 0 chr9 14872723 14872772 -109203400 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 698 342 0 0 0 chr9 14874587 14874625 -109201547 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 698 183 129 0 0 chr9 14874691 14874722 -109201450 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 5 698 416 318 169 8 chr9 14874834 14875094 -109201078 + MER82 DNA MER2_type 162 463 -190 5 698 325 279 26 35 chr9 14875407 14875522 -109200650 + PB1D10 SINE Alu 1 114 -3 5 698 187 291 139 0 chr9 14875891 14875970 -109200202 + L2a LINE L2 3070 3159 -228 5 698 239 260 100 40 chr9 14876776 14876876 -109199296 + PB1D7 SINE Alu 12 117 -3 5 698 235 281 31 0 chr9 14876886 14876950 -109199222 + ID4 SINE ID 18 83 0 5 698 557 250 16 8 chr9 14877059 14877180 -109198992 - RSINE1 SINE B4 -43 122 1 6 698 253 273 45 11 chr9 14877579 14877668 -109198504 + MIRc SINE MIR 4 95 -173 6 698 211 292 46 93 chr9 14878076 14878227 -109197945 + L2a LINE L2 3151 3294 -132 5 698 267 31 0 0 chr9 14878227 14878259 -109197913 + (TCCA)n Simple_repeat Simple_repeat 3 34 0 6 698 260 100 0 146 chr9 14878812 14878880 -109197292 + L1_Mus2 LINE L1 6510 6568 -14 6 698 1302 96 0 21 chr9 14879986 14880178 -109195994 + B2_Mm2 SINE B2 3 190 -5 6 698 760 202 129 16 chr9 14881778 14881964 -109194208 + B3 SINE B2 5 211 -5 6 698 22 0 0 0 chr9 14881967 14881989 -109194183 + AT_rich Low_complexity Low_complexity 1 22 0 6 698 673 229 16 0 chr9 14882387 14882509 -109193663 + MTEa LTR MaLR 1 124 -255 6 698 275 178 11 43 chr9 14882555 14882649 -109193523 + CT-rich Low_complexity Low_complexity 4 94 0 6 698 785 246 6 12 chr9 14882665 14882834 -109193338 + MTEa LTR MaLR 204 371 -8 6 698 1196 62 0 0 chr9 14884195 14884340 -109191832 + B1_Mus2 SINE Alu 2 146 -1 6 698 378 0 0 0 chr9 14884848 14884890 -109191282 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 698 207 139 0 0 chr9 14885023 14885059 -109191113 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 698 214 268 18 0 chr9 14885061 14885117 -109191055 + GA-rich Low_complexity Low_complexity 4 60 0 6 698 180 0 0 0 chr9 14885431 14885451 -109190721 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 698 242 305 58 79 chr9 14885666 14885805 -109190367 + MIRc SINE MIR 1 136 -132 6 698 752 254 5 57 chr9 14886859 14887068 -109189104 + B3A SINE B2 1 198 0 6 698 482 306 82 72 chr9 14888072 14888280 -109187892 - B4A SINE B4 -22 270 61 6 698 1034 44 15 0 chr9 14888337 14888472 -109187700 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 6 698 1094 67 0 0 chr9 14888472 14888607 -109187565 - B1_Mus1 SINE Alu -12 136 2 6 698 980 218 0 0 chr9 14889662 14889850 -109186322 + B3 SINE B2 20 207 -9 6 698 378 219 0 24 chr9 14890177 14890261 -109185911 + (TGAG)n Simple_repeat Simple_repeat 3 84 0 6 698 267 211 9 27 chr9 14890279 14890391 -109185781 + (TGAA)n Simple_repeat Simple_repeat 1 110 0 6 698 26 64 0 0 chr9 14890913 14890960 -109185212 + AT_rich Low_complexity Low_complexity 1 47 0 6 698 1034 224 24 0 chr9 14891518 14891728 -109184444 + B3 SINE B2 2 216 0 6 698 1060 212 19 19 chr9 14891964 14892180 -109183992 + B3 SINE B2 1 216 0 6 698 1171 288 126 18 chr9 14893721 14894223 -109181949 + Lx8 LINE L1 6890 7445 -28 6 698 366 23 0 0 chr9 14895081 14895124 -109181048 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 698 245 258 48 0 chr9 14896257 14896319 -109179853 - ID4_ SINE ID -14 69 5 6 698 21 36 0 0 chr9 14896664 14896692 -109179480 + AT_rich Low_complexity Low_complexity 1 28 0 6 698 292 308 33 0 chr9 14897818 14897938 -109178234 + MIR SINE MIR 133 256 -6 6 698 2146 101 3 0 chr9 14899114 14899432 -109176740 - ORR1A2 LTR MaLR -8 319 1 6 698 628 229 15 0 chr9 14899595 14899726 -109176446 + B3A SINE B2 7 139 -59 6 698 324 0 0 0 chr9 14899735 14899771 -109176401 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 698 1130 211 19 0 chr9 14900691 14900899 -109175273 + B3 SINE B2 1 212 -4 6 698 833 68 0 8 chr9 14900899 14901017 -109175155 + (GGA)n Simple_repeat Simple_repeat 1 117 0 6 698 1275 28 0 32 chr9 14901017 14901203 -109174969 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 698 716 102 65 0 chr9 14901258 14901366 -109174806 + B1_Mus1 SINE Alu 2 116 -32 6 698 204 240 26 26 chr9 14901964 14901977 -109174195 + polypurine Low_complexity Low_complexity 3 15 0 6 698 685 192 247 6 chr9 14901977 14902155 -109174017 + ID_B1 SINE B4 4 224 0 6 698 233 235 21 21 chr9 14902155 14902229 -109173943 + GA-rich Low_complexity Low_complexity 1 74 0 6 698 1164 88 5 14 chr9 14902840 14903062 -109173110 + (TG)n Simple_repeat Simple_repeat 1 219 0 6 698 447 202 0 0 chr9 14903107 14903221 -109172951 + (TG)n Simple_repeat Simple_repeat 2 115 0 6 698 586 321 20 10 chr9 14903225 14903420 -109172752 - B4A SINE B4 -1 291 95 6 698 851 243 128 44 chr9 14903644 14903988 -109172184 - Lx8 LINE L1 -2 7471 7099 6 698 250 118 0 0 chr9 14903988 14904022 -109172150 - Lx8 LINE L1 -341 7132 7099 6 698 635 262 26 11 chr9 14904122 14904311 -109171861 - Lx8 LINE L1 -339 7134 6943 6 698 504 193 0 0 chr9 14904311 14904420 -109171752 + (TG)n Simple_repeat Simple_repeat 1 109 0 6 698 539 219 40 16 chr9 14904420 14904545 -109171627 - Lx8 LINE L1 -504 6969 6842 6 698 346 280 42 21 chr9 14905358 14905453 -109170719 + ORR1E LTR MaLR 15 111 -248 6 698 1038 205 29 10 chr9 14905705 14905912 -109170260 - B3 SINE B2 -5 211 1 6 698 510 319 45 0 chr9 14906761 14906918 -109169254 + RSINE1 SINE B4 2 165 0 6 698 529 129 0 0 chr9 14909186 14909198 -109166974 - B1_Mur2 SINE Alu 0 149 138 6 698 251 28 0 27 chr9 14909198 14909235 -109166937 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 698 529 129 0 0 chr9 14909235 14909307 -109166865 - B1_Mur2 SINE Alu -12 137 66 6 698 353 136 141 6 chr9 14909306 14909388 -109166784 - B1_Mur4 SINE Alu -24 123 36 6 698 23 33 0 0 chr9 14909467 14909497 -109166675 + AT_rich Low_complexity Low_complexity 1 30 0 6 698 1220 27 7 7 chr9 14910519 14910666 -109165506 + B1_Mus2 SINE Alu 1 147 0 6 698 380 182 45 0 chr9 14911547 14911613 -109164559 - ID4_ SINE ID -10 73 5 6 698 307 119 119 0 chr9 14911901 14911960 -109164212 - HAL1-2a_MD LINE L1 -608 2416 2351 6 698 189 0 0 0 chr9 14911961 14911982 -109164190 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 698 195 129 0 0 chr9 14911982 14912013 -109164159 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 698 559 282 64 86 chr9 14912040 14912273 -109163899 - B4 SINE B4 -63 229 2 6 698 578 245 35 14 chr9 14913407 14913548 -109162624 + B3A SINE B2 39 182 -16 6 698 315 0 0 0 chr9 14915031 14915066 -109161106 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 698 243 0 0 0 chr9 14915352 14915379 -109160793 + (T)n Simple_repeat Simple_repeat 1 27 0 6 698 187 424 10 0 chr9 14917460 14917559 -109158613 + MIRb SINE MIR 34 133 -135 6 698 247 198 98 108 chr9 14918341 14918443 -109157729 + B1F SINE Alu 13 113 -36 6 698 324 0 0 0 chr9 14918451 14918487 -109157685 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 698 666 298 107 25 chr9 14918953 14919270 -109156902 - Lx8 LINE L1 -2 7471 7129 6 698 279 133 0 0 chr9 14919377 14919422 -109156750 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 6 698 417 215 0 0 chr9 14919441 14919520 -109156652 - B1_Mur2 SINE Alu -28 121 43 6 698 2866 143 11 22 chr9 14920152 14920603 -109155569 + RLTR41 LTR ERV1 1 446 0 6 698 413 306 57 28 chr9 14921731 14921792 -109154380 + MURVY-int LTR ERV1 1187 1247 -6309 6 698 423 0 0 0 chr9 14921792 14921839 -109154333 + (CCA)n Simple_repeat Simple_repeat 2 48 0 6 698 416 296 13 6 chr9 14921839 14921989 -109154183 + MURVY-int LTR ERV1 1194 1403 -6153 6 698 1076 279 36 31 chr9 14922076 14922464 -109153708 + RLTR6-int LTR ERV1 7328 7717 -61 6 698 2633 106 115 32 chr9 14922563 14922973 -109153199 + RLTR41 LTR ERV1 1 444 -2 6 698 299 235 0 0 chr9 14923253 14923304 -109152868 - ID4_ SINE ID -7 76 26 6 698 201 39 0 0 chr9 14925268 14925294 -109150878 + (A)n Simple_repeat Simple_repeat 1 26 0 6 698 470 144 52 0 chr9 14925298 14925395 -109150777 + PB1D9 SINE Alu 18 119 -1 6 698 554 254 74 25 chr9 14925556 14925758 -109150414 + B3 SINE B2 5 216 0 6 698 429 352 78 66 chr9 14926264 14926535 -109149637 - FordPrefect DNA Tip100 -1274 409 136 6 698 289 300 14 0 chr9 14926715 14926785 -109149387 + B4A SINE B4 125 195 -97 6 698 246 208 0 0 chr9 14926840 14926893 -109149279 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 698 1171 181 85 63 chr9 14927607 14927878 -109148294 + Lx6 LINE L1 56 332 -7396 6 698 207 0 0 0 chr9 14927889 14927912 -109148260 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 698 454 228 20 18 chr9 14927912 14928043 -109148129 - B1_Mur3 SINE Alu -3 146 22 6 698 1009 256 102 11 chr9 14928030 14928394 -109147778 + RLTR20A1 LTR ERVK 49 445 -106 6 698 3652 35 2 2 chr9 14928394 14928824 -109147348 + L1Md_F2 LINE L1 5157 5586 -297 6 698 8689 27 1 0 chr9 14928825 14929819 -109146353 + L1Md_F2 LINE L1 5588 6582 0 6 698 284 250 0 0 chr9 14929925 14929985 -109146187 - B1_Mur4 SINE Alu -89 61 2 6 698 24202 155 82 27 chr9 14929985 14930726 -109145446 + Lx6 LINE L1 564 1356 -4524 6 698 1184 61 0 0 chr9 14930726 14930874 -109145298 + B1_Mus1 SINE Alu 1 148 0 6 698 24202 144 28 60 chr9 14930874 14932069 -109144103 + Lx6 LINE L1 1357 2468 -3412 6 698 188 35 35 0 chr9 14932069 14932098 -109144074 + (CAA)n Simple_repeat Simple_repeat 2 31 0 6 698 24202 144 28 60 chr9 14932098 14932733 -109143439 + Lx6 LINE L1 2469 3006 -2874 6 698 1392 56 0 0 chr9 14932733 14932911 -109143261 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 6 698 24202 144 28 60 chr9 14932911 14935084 -109141088 + Lx6 LINE L1 3007 5194 -686 6 698 270 0 0 0 chr9 14935084 14935114 -109141058 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 6 698 24202 187 50 47 chr9 14935114 14937285 -109138887 + Lx6 LINE L1 5195 7407 -53 6 698 1873 206 69 65 chr9 14937400 14937905 -109138267 + RLTR18B LTR ERVK 1 507 -5 6 698 932 274 56 0 chr9 14938476 14938710 -109137462 + MTE2b LTR MaLR 10 256 -123 6 698 288 158 0 0 chr9 14938710 14938786 -109137386 + CT-rich Low_complexity Low_complexity 45 120 0 6 698 561 150 0 37 chr9 14938788 14938818 -109137354 + polypyrimidine Low_complexity Low_complexity 151 180 0 6 698 1035 107 0 0 chr9 14938818 14938996 -109137176 + (TCC)n Simple_repeat Simple_repeat 3 180 0 6 698 561 150 0 37 chr9 14938996 14939019 -109137153 + polypyrimidine Low_complexity Low_complexity 129 150 0 6 698 1050 107 0 0 chr9 14939019 14939377 -109136795 + (TCC)n Simple_repeat Simple_repeat 1 358 0 6 698 561 150 0 37 chr9 14939377 14939439 -109136733 + polypyrimidine Low_complexity Low_complexity 68 128 0 6 698 1152 98 0 0 chr9 14939439 14939800 -109136372 + (TCC)n Simple_repeat Simple_repeat 1 361 0 6 698 561 150 0 37 chr9 14939800 14939862 -109136310 + polypyrimidine Low_complexity Low_complexity 6 67 0 6 698 951 117 0 0 chr9 14939865 14940045 -109136127 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 698 1152 98 0 0 chr9 14940063 14940582 -109135590 + (TCC)n Simple_repeat Simple_repeat 1 519 0 7 698 972 111 0 0 chr9 14940600 14940780 -109135392 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 698 466 229 58 43 chr9 14940781 14940947 -109135225 + MTE2b LTR MaLR 244 406 -13 6 698 426 253 176 11 chr9 14940947 14941123 -109135049 + Tigger7 DNA MER2_type 96 300 -2191 7 698 430 195 58 0 chr9 14941230 14941317 -109134855 - B1_Mur1 SINE Alu -29 120 29 7 698 215 298 11 56 chr9 14941263 14941352 -109134820 - B4A SINE B4 -125 167 83 7 698 429 251 191 5 chr9 14941327 14941515 -109134657 + Tigger7 DNA MER2_type 2260 2482 -9 7 698 304 273 16 34 chr9 14941603 14941756 -109134416 + L1MB4 LINE L1 5725 5873 -311 7 698 308 317 83 0 chr9 14941812 14941957 -109134215 + L1MB4 LINE L1 5994 6150 -30 7 698 258 209 405 9 chr9 14941959 14942075 -109134097 + RSINE1 SINE B4 4 165 0 7 698 23 54 0 0 chr9 14942082 14942119 -109134053 + AT_rich Low_complexity Low_complexity 1 37 0 7 699 227 217 58 46 chr9 14942243 14942330 -109133842 - MER53 DNA hAT -74 119 32 7 699 621 328 32 18 chr9 14943525 14943863 -109132309 + L1MA5 LINE L1 5594 5936 -364 7 699 203 179 0 82 chr9 14943871 14943944 -109132228 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 7 699 306 248 26 60 chr9 14944377 14944493 -109131679 + Lx8 LINE L1 7358 7469 -4 7 699 1323 55 59 32 chr9 14944574 14944761 -109131411 + B2_Mm1t SINE B2 1 192 -1 7 699 992 119 10 127 chr9 14945600 14945825 -109130347 + ORR1A4 LTR MaLR 1 236 -134 7 699 13914 156 29 11 chr9 14945825 14948695 -109127477 + MERVL_2A-int LTR ERVL 797 3715 -1999 7 699 1950 125 6 68 chr9 14948702 14949053 -109127119 - ORR1A4 LTR MaLR 0 329 1 7 699 279 268 56 0 chr9 14949385 14949456 -109126716 + ID4_ SINE ID 2 76 -7 7 699 438 20 0 0 chr9 14949755 14949806 -109126366 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 699 618 263 69 17 chr9 14949907 14950081 -109126091 + B3A SINE B2 1 183 -15 7 699 465 267 58 0 chr9 14950164 14950284 -109125888 - MER5A1 DNA MER1_type -4 162 36 7 699 350 263 50 20 chr9 14950705 14950806 -109125366 + MLT1J2 LTR MaLR 102 205 -243 7 699 532 183 30 38 chr9 14951040 14951171 -109125001 + MERVL_2A-int LTR ERVL 5108 5237 -477 7 699 403 331 50 0 chr9 14951278 14951438 -109124734 - MER58B DNA MER1_type -10 331 164 7 699 299 345 44 44 chr9 14951474 14951768 -109124404 + L1MC2 LINE L1 6035 6328 -16 7 699 250 343 131 0 chr9 14951782 14951881 -109124291 + PB1D10 SINE Alu 1 112 -5 7 699 587 180 44 26 chr9 14951885 14951999 -109124173 + B3A SINE B2 1 116 -82 7 699 315 0 0 0 chr9 14952029 14952064 -109124108 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 699 453 19 0 0 chr9 14952331 14952385 -109123787 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 699 414 255 96 0 chr9 14952887 14952981 -109123191 + PB1D7 SINE Alu 1 103 -17 7 699 1423 80 11 0 chr9 14953270 14953458 -109122714 + B2_Mm1a SINE B2 2 191 -2 7 699 333 0 0 0 chr9 14953504 14953541 -109122631 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 7 699 635 243 58 6 chr9 14954724 14954898 -109121274 + ID_B1 SINE B4 42 224 0 7 699 204 122 0 0 chr9 14954898 14954939 -109121233 + (A)n Simple_repeat Simple_repeat 1 41 0 7 699 315 0 0 0 chr9 14955005 14955040 -109121132 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 699 471 215 157 0 chr9 14956249 14956370 -109119802 + B1_Mur2 SINE Alu 5 144 -5 7 699 228 277 108 0 chr9 14957151 14957216 -109118956 + Lx8 LINE L1 6572 6643 -830 7 699 515 165 174 0 chr9 14957246 14957355 -109118817 - B1_Mus2 SINE Alu -11 136 9 7 699 1208 269 133 23 chr9 14957412 14957885 -109118287 + Lx8 LINE L1 6817 7341 -132 7 699 233 143 71 0 chr9 14957917 14957959 -109118213 + ID4_ SINE ID 1 45 -38 7 699 226 132 38 0 chr9 14957964 14958017 -109118155 + GA-rich Low_complexity Low_complexity 4 58 0 7 699 438 149 33 108 chr9 14958175 14958295 -109117877 + Lx4A LINE L1 6946 7056 -2 7 699 304 339 7 110 chr9 14958799 14958935 -109117237 + RSINE1 SINE B4 29 150 -15 7 699 411 132 0 0 chr9 14958940 14959008 -109117164 + (CAT)n Simple_repeat Simple_repeat 1 68 0 7 699 485 216 14 29 chr9 14959102 14959240 -109116932 + Lx6 LINE L1 7299 7434 -26 7 699 204 122 0 0 chr9 14959798 14959839 -109116333 + (A)n Simple_repeat Simple_repeat 1 41 0 7 699 243 203 30 30 chr9 14960129 14960195 -109115977 - MIRc SINE MIR -88 180 115 7 699 624 253 38 62 chr9 14960500 14960660 -109115512 + RSINE1 SINE B4 2 157 -8 7 699 2228 102 18 9 chr9 14960721 14961047 -109115125 - ORR1A4 LTR MaLR 0 329 1 7 699 326 269 0 13 chr9 14961360 14961439 -109114733 + ID_B1 SINE B4 112 189 -35 7 699 494 263 149 21 chr9 14961642 14961883 -109114289 + RLTR10A LTR ERVK 140 411 0 7 699 403 174 61 52 chr9 14961899 14962014 -109114158 + RLTR10-int LTR ERVK 318 433 -1554 7 699 275 311 15 15 chr9 14962287 14962424 -109113748 + IAP-d-int LTR ERVK 2666 2802 -4779 7 699 2376 284 56 45 chr9 14962473 14964941 -109111231 + IAP-d-int LTR ERVK 1002 5080 -1462 7 699 524 237 183 50 chr9 14964982 14965222 -109110950 + RLTR10A LTR ERVK 140 411 0 7 699 264 283 68 68 chr9 14966278 14966441 -109109731 + MuLV-int LTR ERV1 515 677 -6879 7 699 255 213 0 0 chr9 14966520 14966567 -109109605 + MuLV-int LTR ERV1 826 872 -6906 7 699 1382 328 44 23 chr9 14966963 14967706 -109108466 + MuLV-int LTR ERV1 1187 1945 -5611 7 699 2848 329 47 35 chr9 14967744 14969706 -109106466 + MuLV-int LTR ERV1 2205 4388 -3218 7 699 529 229 25 25 chr9 14969767 14969888 -109106284 - MuLV-int LTR ERV1 -3755 3851 3731 7 699 1306 324 84 24 chr9 14970331 14971084 -109105088 + MuLV-int LTR ERV1 4750 5547 -2009 7 699 276 341 8 8 chr9 14971800 14971927 -109104245 + MuLV-int LTR ERV1 6156 6282 -1274 7 699 855 293 82 59 chr9 14972074 14972846 -109103326 + MuLV-int LTR ERV1 6723 7498 -280 7 699 387 0 0 0 chr9 14972846 14972889 -109103283 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 699 812 274 101 40 chr9 14972889 14973060 -109103112 + MuLV-int LTR ERV1 7316 7510 -96 7 699 543 190 113 30 chr9 14973367 14973576 -109102596 + RLTR47_MM LTR ERV1 294 505 -27 7 699 441 0 0 0 chr9 14974545 14974594 -109101578 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 699 520 314 56 41 chr9 14974598 14974794 -109101378 - B4 SINE B4 -11 281 83 7 699 537 311 76 5 chr9 14975320 14975543 -109100629 - MT2A LTR ERVL -2 531 293 7 699 288 308 17 96 chr9 14975665 14975780 -109100392 - PB1D10 SINE Alu 0 117 12 7 699 311 315 24 129 chr9 14975890 14976014 -109100158 + RSINE1 SINE B4 41 151 -14 7 699 333 0 0 0 chr9 14976021 14976058 -109100114 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 699 291 295 0 0 chr9 14976058 14976170 -109100002 + (TA)n Simple_repeat Simple_repeat 1 112 0 7 699 289 315 27 18 chr9 14976196 14976306 -109099866 + PB1D10 SINE Alu 5 115 -2 7 699 630 257 6 28 chr9 14976340 14976516 -109099656 + B4 SINE B4 36 207 -85 7 699 210 67 21 43 chr9 14976521 14976568 -109099604 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 7 699 206 216 0 0 chr9 14976608 14976645 -109099527 + (CACG)n Simple_repeat Simple_repeat 4 40 0 7 699 301 361 51 20 chr9 14976864 14977059 -109099113 - MLT1J1 LTR MaLR -204 240 40 7 699 339 25 0 0 chr9 14977126 14977166 -109099006 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 699 362 286 30 10 chr9 14977622 14977721 -109098451 + PB1D10 SINE Alu 1 101 -16 7 699 2349 160 144 17 chr9 14978703 14979230 -109096942 - RMER20B LTR ERVK -1 626 33 7 699 414 0 0 0 chr9 14979455 14979501 -109096671 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 699 544 211 0 0 chr9 14979507 14979602 -109096570 - RSINE1 SINE B4 -51 114 20 7 699 247 317 0 0 chr9 14980185 14980245 -109095927 + RSINE1 SINE B4 91 150 -15 7 699 402 57 0 0 chr9 14980250 14980303 -109095869 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 699 499 301 7 22 chr9 14981921 14982060 -109094112 + B4A SINE B4 3 139 -153 7 699 425 268 35 21 chr9 14982080 14982190 -109093982 + B4A SINE B4 104 215 -77 7 699 571 165 209 0 chr9 14982190 14982305 -109093867 + B1_Mur3 SINE Alu 1 139 -10 7 699 210 37 0 0 chr9 14982305 14982332 -109093840 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 699 425 268 35 21 chr9 14982332 14982361 -109093811 + B4A SINE B4 216 245 -47 7 699 703 191 6 6 chr9 14982361 14982519 -109093653 + GA-rich Low_complexity Low_complexity 3 160 0 7 699 311 233 0 189 chr9 14982535 14982586 -109093586 + B3 SINE B2 111 159 -57 7 699 297 0 0 0 chr9 14982586 14982619 -109093553 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 699 311 233 0 189 chr9 14982619 14982694 -109093478 + B3 SINE B2 160 213 -3 7 699 971 61 121 0 chr9 14982696 14982828 -109093344 + B1_Mus1 SINE Alu 1 148 0 7 699 30 27 0 0 chr9 14982829 14982866 -109093306 + AT_rich Low_complexity Low_complexity 1 37 0 7 699 423 0 0 0 chr9 14985563 14985610 -109090562 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 699 864 87 1 3 chr9 14985612 14985741 -109090431 + B2_Mm2 SINE B2 38 170 -23 7 699 657 69 0 0 chr9 14985741 14985828 -109090344 + (TA)n Simple_repeat Simple_repeat 1 87 0 7 699 804 147 19 45 chr9 14985828 14985855 -109090317 + B2_Mm1t SINE B2 171 191 -2 7 699 32 57 0 0 chr9 14985972 14986025 -109090147 + AT_rich Low_complexity Low_complexity 1 53 0 7 699 28 0 0 0 chr9 14986069 14986097 -109090075 + AT_rich Low_complexity Low_complexity 1 28 0 7 699 234 116 0 0 chr9 14986776 14986819 -109089353 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 7 699 399 254 70 0 chr9 14986891 14987005 -109089167 - B1F SINE Alu -19 130 9 7 699 302 314 188 17 chr9 14987013 14987305 -109088867 - L1MCa LINE L1 -4232 2276 1935 7 699 267 290 0 0 chr9 14987693 14987762 -109088410 + C-rich Low_complexity Low_complexity 2 70 0 7 699 341 233 258 0 chr9 14987791 14987950 -109088222 - LTR50 LTR ERVL -593 202 3 7 699 425 241 0 0 chr9 14987996 14988079 -109088093 - B1F1 SINE Alu -61 88 6 7 699 635 221 14 0 chr9 14988112 14988252 -109087920 + B4A SINE B4 108 249 -43 7 699 1351 72 11 6 chr9 14988666 14988848 -109087324 - B2_Mm1a SINE B2 -6 187 5 7 699 871 218 6 6 chr9 14989031 14989202 -109086970 + B3 SINE B2 9 179 -37 7 699 390 273 44 36 chr9 14990202 14990339 -109085833 + 7SK RNA RNA 2 139 -192 7 699 737 228 16 27 chr9 14990331 14990516 -109085656 + B3 SINE B2 32 214 -2 7 699 357 231 0 25 chr9 14990559 14990639 -109085533 + ID_B1 SINE B4 82 159 -65 7 699 243 0 0 0 chr9 14990639 14990666 -109085506 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 699 306 0 0 0 chr9 14990666 14990699 -109085473 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 699 246 294 141 0 chr9 14990858 14990950 -109085222 - MIR SINE MIR -132 136 32 7 699 1056 116 7 0 chr9 14991057 14991204 -109084968 - B1_Mur3 SINE Alu -1 148 1 8 699 1188 111 0 0 chr9 14991487 14991667 -109084505 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 8 699 935 261 25 105 chr9 14992164 14992345 -109083827 + ORR1D2 LTR MaLR 1 166 -204 8 699 303 49 0 0 chr9 14992345 14992386 -109083786 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 699 297 51 0 0 chr9 14992391 14992430 -109083742 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 8 699 935 261 25 105 chr9 14992430 14992641 -109083531 + ORR1D2 LTR MaLR 167 367 -3 8 699 778 183 67 0 chr9 14993807 14993987 -109082185 + MTC LTR MaLR 27 218 -203 8 699 547 197 42 79 chr9 14994159 14994204 -109081968 + MTC LTR MaLR 256 299 -120 8 699 1636 198 98 33 chr9 14994204 14994623 -109081549 - RLTR41 LTR ERV1 0 446 1 8 699 1341 154 75 122 chr9 14994623 14995051 -109081121 + RMER17C LTR ERVK 3 410 0 8 699 547 197 42 79 chr9 14995051 14995169 -109081003 + MTC LTR MaLR 300 413 -6 8 699 1520 83 0 0 chr9 14995248 14995441 -109080731 + B2_Mm1a SINE B2 1 193 0 8 699 6538 126 29 29 chr9 14995460 14996376 -109079796 + L1_Mm LINE L1 3741 4663 -1220 8 699 202 29 0 54 chr9 14996376 14996413 -109079759 + (TAA)n Simple_repeat Simple_repeat 2 36 0 8 699 6538 126 29 29 chr9 14996413 14996585 -109079587 + L1_Mm LINE L1 4664 4828 -1055 8 699 2302 104 31 29 chr9 14996585 14996970 -109079202 - LTRIS4 LTR ERV1 0 507 122 8 699 23135 68 16 8 chr9 14996991 14999998 -109076174 - MuRRS4-int LTR ERV1 -1 5062 2032 8 699 14938 82 36 8 chr9 15000005 15002038 -109074134 - MuRRS4-int LTR ERV1 -5445 2333 5 1 699 2814 89 5 5 chr9 15002041 15002427 -109073745 - LTRIS4 LTR ERV1 0 507 122 1 699 7144 125 1 11 chr9 15002464 15002673 -109073499 + L1_Mus3 LINE L1 4816 5025 -858 2 699 3243 34 20 5 chr9 15002673 15003063 -109073109 - MTA_Mm LTR MaLR 0 396 1 3 699 7672 103 6 9 chr9 15003063 15004677 -109071495 + L1_Mus3 LINE L1 5026 6630 -8 2 699 1107 240 103 7 chr9 15004687 15004968 -109071204 + MTC-int LTR MaLR 243 550 -708 4 699 1694 182 93 56 chr9 15004995 15005391 -109070781 + MTD LTR MaLR 1 411 -8 5 699 372 219 0 0 chr9 15005394 15005467 -109070705 + L1M4 LINE L1 3768 3840 -2306 6 699 374 341 45 30 chr9 15006030 15006299 -109069873 + L1MB8 LINE L1 5786 6058 -120 7 699 309 282 0 0 chr9 15006314 15006385 -109069787 + ID SINE ID 15 85 -139 8 699 311 249 2 2 chr9 15006322 15006394 -109069778 + ID4 SINE ID 22 93 -59 9 699 258 299 70 41 chr9 15007138 15007309 -109068863 + L1MB3 LINE L1 5984 6159 -24 1 699 817 191 7 0 chr9 15007449 15007590 -109068582 + B3A SINE B2 2 143 -55 1 699 504 166 0 0 chr9 15007606 15007745 -109068427 + CT-rich Low_complexity Low_complexity 2 140 0 1 699 205 211 19 19 chr9 15007781 15007834 -109068338 + GA-rich Low_complexity Low_complexity 2 54 0 1 699 803 224 39 0 chr9 15008026 15008182 -109067990 + ID_B1 SINE B4 6 167 -57 1 699 291 283 10 42 chr9 15008104 15008187 -109067985 + B1F1 SINE Alu 5 84 -65 1 699 186 43 0 0 chr9 15008187 15008210 -109067962 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 699 291 283 10 42 chr9 15008210 15008222 -109067950 + B1F1 SINE Alu 85 96 -53 1 699 225 0 0 0 chr9 15008397 15008422 -109067750 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 699 297 0 0 0 chr9 15008438 15008471 -109067701 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 699 702 0 0 0 chr9 15008477 15008555 -109067617 + (GGAA)n Simple_repeat Simple_repeat 1 78 0 1 699 282 95 0 0 chr9 15008871 15008913 -109067259 + (TCG)n Simple_repeat Simple_repeat 2 43 0 2 699 230 237 85 0 chr9 15009544 15009603 -109066569 - MLT2D LTR ERVL -238 176 113 2 699 574 263 62 55 chr9 15009626 15009658 -109066514 + B3A SINE B2 6 37 -161 2 699 1237 71 88 0 chr9 15009658 15009828 -109066344 + B2_Mm1a SINE B2 2 186 -7 2 699 574 263 62 57 chr9 15009828 15009942 -109066230 + B3A SINE B2 38 151 -47 2 699 543 37 37 0 chr9 15009942 15010024 -109066148 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 699 311 273 60 158 chr9 15010024 15010059 -109066113 + B2_Mm2 SINE B2 141 170 -25 2 699 497 0 27 27 chr9 15010919 15010994 -109065178 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 2 699 358 289 11 0 chr9 15011013 15011103 -109065069 - PB1D10 SINE Alu -26 91 1 2 699 792 111 0 0 chr9 15012023 15012149 -109064023 + (TG)n Simple_repeat Simple_repeat 2 127 0 2 699 210 220 36 58 chr9 15012808 15012896 -109063276 - MIR SINE MIR -94 174 89 2 699 1015 83 6 6 chr9 15013070 15013227 -109062945 + (GGGGA)n Simple_repeat Simple_repeat 4 160 0 2 699 196 295 33 0 chr9 15013305 15013366 -109062806 + L2 LINE L2 2587 2649 -770 3 699 666 37 0 0 chr9 15013566 15013647 -109062525 + (CCCCAG)n Simple_repeat Simple_repeat 6 86 0 3 699 1213 269 58 44 chr9 15013881 15014243 -109061929 - MTEa LTR MaLR -10 369 3 3 699 6354 186 62 30 chr9 15014582 15015724 -109060448 + Lx7 LINE L1 6251 7434 -262 3 699 1604 27 5 5 chr9 15015724 15015913 -109060259 - B2_Mm1a SINE B2 -3 190 2 3 699 6354 186 62 30 chr9 15015913 15016052 -109060120 + Lx7 LINE L1 7435 7572 -124 3 699 807 220 0 14 chr9 15016084 15016227 -109059945 - U1 snRNA snRNA -22 143 3 3 699 552 203 7 36 chr9 15016227 15016365 -109059807 + Lx7 LINE L1 7558 7691 -5 3 699 209 163 20 0 chr9 15016373 15016422 -109059750 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 699 557 271 119 16 chr9 15017012 15017263 -109058909 - L1_Mur3 LINE L1 -2407 3736 3460 3 699 1217 94 35 0 chr9 15017263 15017433 -109058739 - B2_Mm1t SINE B2 -1 192 17 3 699 1043 267 34 13 chr9 15017436 15017892 -109058280 - L1_Mur3 LINE L1 -3110 2770 2398 3 699 408 82 0 0 chr9 15018062 15018123 -109058049 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 699 833 248 164 40 chr9 15018124 15018463 -109057709 - RMER4B LTR ERVK -9 576 196 4 699 6106 168 83 58 chr9 15018613 15019222 -109056950 + L1_Mur2 LINE L1 850 1582 -4298 4 699 800 78 17 0 chr9 15019222 15019338 -109056834 + (GAAA)n Simple_repeat Simple_repeat 2 119 0 4 699 6106 181 58 115 chr9 15019338 15019515 -109056657 + L1_Mur2 LINE L1 1583 1759 -4121 4 699 1284 81 0 6 chr9 15019515 15019689 -109056483 - B2_Mm2 SINE B2 0 195 23 4 699 6106 181 58 115 chr9 15019689 15019986 -109056186 + L1_Mur2 LINE L1 1760 2057 -3823 4 699 396 0 0 0 chr9 15019986 15020030 -109056142 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 699 6106 181 58 115 chr9 15020030 15020780 -109055392 + L1_Mur2 LINE L1 2058 2859 -3021 4 699 1148 246 107 91 chr9 15020791 15021287 -109054885 - RLTR20A LTR ERVK -25 516 13 4 699 1901 167 205 263 chr9 15021305 15021679 -109054493 + L1_Mur2 LINE L1 2867 3179 -2707 4 699 758 78 0 0 chr9 15021679 15021781 -109054391 + B2_Mm2 SINE B2 1 102 -93 4 699 1901 167 205 263 chr9 15021781 15022061 -109054111 + L1_Mur2 LINE L1 3180 3415 -2471 4 699 386 39 19 0 chr9 15022061 15022113 -109054059 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 699 1192 72 0 0 chr9 15022113 15022266 -109053906 - B2_Mm2 SINE B2 -42 153 1 4 699 2331 143 244 131 chr9 15022266 15023031 -109053141 + L1_Mur2 LINE L1 3416 4444 -1442 4 699 20181 88 0 92 chr9 15023027 15023907 -109052265 + L1_Mus2 LINE L1 437 1266 -4620 5 699 1195 61 0 0 chr9 15023907 15024054 -109052118 + B1_Mus1 SINE Alu 1 147 -1 5 699 21405 127 54 24 chr9 15024054 15024092 -109052080 + L1_Mus2 LINE L1 1240 1267 -4619 5 699 387 0 0 0 chr9 15024092 15024135 -109052037 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 5 699 21405 106 35 20 chr9 15024135 15028932 -109047240 + L1_Mus2 LINE L1 1264 6565 -1 5 699 2658 131 61 0 chr9 15028946 15029388 -109046784 + L1_Mur2 LINE L1 4425 4893 -984 5 699 787 255 89 91 chr9 15029388 15029751 -109046421 + RMER16 LTR ERVK 1 443 -90 5 699 1709 79 10 39 chr9 15029751 15030019 -109046153 + LTRIS2 LTR ERV1 1 236 -328 5 699 226 176 0 0 chr9 15030026 15030077 -109046095 + MT2A LTR ERVL 479 529 -4 5 699 1797 143 14 60 chr9 15030091 15030201 -109045971 + LTRIS2 LTR ERV1 218 311 -253 5 699 338 67 0 0 chr9 15030201 15030276 -109045896 - L1Md_F2 LINE L1 0 6582 6519 5 699 1797 143 14 60 chr9 15030276 15030528 -109045644 + LTRIS2 LTR ERV1 312 563 -1 5 699 573 121 11 11 chr9 15030528 15030620 -109045552 + RMER16 LTR ERVK 440 531 -2 5 699 923 141 39 0 chr9 15030622 15030778 -109045394 + Lx5 LINE L1 4888 5049 -828 5 699 2652 138 34 1 chr9 15030775 15031257 -109044915 + Lx5 LINE L1 5426 5927 -1123 5 699 2088 121 12 24 chr9 15031258 15031417 -109044755 - ORR1A2 LTR MaLR 0 327 175 5 699 2870 63 54 22 chr9 15031417 15031825 -109044347 - BGLII LTR ERVK 0 421 1 6 699 2088 121 12 24 chr9 15031825 15031995 -109044177 - ORR1A2 LTR MaLR -153 174 2 5 699 6011 171 46 10 chr9 15031995 15033081 -109043091 + Lx5 LINE L1 5923 7047 -3 5 699 644 184 216 11 chr9 15033096 15033272 -109042900 - RMER4B LTR ERVK -373 212 1 6 699 448 220 101 43 chr9 15033305 15033443 -109042729 - MLT2C2 LTR ERVL -286 178 33 6 699 2117 143 19 30 chr9 15034006 15034374 -109041798 + ORR1B1 LTR MaLR 23 386 -8 6 699 3653 114 49 65 chr9 15034481 15034522 -109041650 - MT2B LTR ERVL 0 601 553 6 699 357 24 0 0 chr9 15034522 15034564 -109041608 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 699 3653 114 49 65 chr9 15034564 15035133 -109041039 - MT2B LTR ERVL -49 552 2 6 699 2392 50 61 25 chr9 15035138 15035464 -109040708 + ORR1A1 LTR MaLR 1 338 -8 6 699 282 114 0 22 chr9 15035468 15035513 -109040659 + ID4_ SINE ID 36 79 -4 6 699 467 33 16 0 chr9 15036059 15036120 -109040052 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 6 699 556 229 56 134 chr9 15036999 15037231 -109038941 - B3 SINE B2 -1 215 2 6 699 259 235 0 0 chr9 15037610 15037672 -109038500 - MT2A LTR ERVL -231 302 248 7 699 23 33 0 0 chr9 15038088 15038118 -109038054 + AT_rich Low_complexity Low_complexity 1 30 0 7 699 659 236 38 41 chr9 15038183 15038390 -109037782 + ORR1E LTR MaLR 63 257 -113 7 699 975 129 0 0 chr9 15038414 15039168 -109037004 + (TCC)n Simple_repeat Simple_repeat 1 754 0 7 699 469 207 42 25 chr9 15039505 15039624 -109036548 + ORR1E LTR MaLR 259 379 0 7 699 198 378 13 26 chr9 15039839 15039915 -109036257 - MIRm SINE MIR -1 275 201 7 699 255 234 75 38 chr9 15040187 15040267 -109035905 - ID4 SINE ID 0 83 1 7 699 363 282 93 78 chr9 15040347 15040686 -109035486 - MTEb LTR MaLR -15 364 3 7 699 847 274 58 27 chr9 15040708 15040794 -109035378 + B4A SINE B4 3 89 -203 7 699 180 0 0 0 chr9 15040794 15040814 -109035358 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 699 847 274 58 27 chr9 15040814 15040986 -109035186 + B4A SINE B4 90 268 -24 7 699 393 22 0 0 chr9 15040986 15041032 -109035140 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 699 273 255 40 60 chr9 15041191 15041291 -109034881 - L1MA8 LINE L1 -184 6107 6010 8 699 358 266 0 0 chr9 15041434 15041513 -109034659 - PB1D10 SINE Alu -1 116 38 8 699 980 272 27 0 chr9 15041751 15041975 -109034197 + MTE2b LTR MaLR 1 230 -149 8 699 693 126 0 0 chr9 15043033 15043144 -109033028 + (TGGA)n Simple_repeat Simple_repeat 2 112 0 8 699 238 250 18 0 chr9 15043444 15043500 -109032672 + CT-rich Low_complexity Low_complexity 2 58 0 8 699 255 265 44 0 chr9 15045360 15045428 -109030744 + ID4 SINE ID 3 73 -10 8 699 270 0 0 0 chr9 15045491 15045521 -109030651 + (A)n Simple_repeat Simple_repeat 1 30 0 8 699 312 287 126 34 chr9 15045661 15045780 -109030392 + MLT1A0 LTR MaLR 126 255 -110 8 699 319 255 32 11 chr9 15045803 15045898 -109030274 + RSINE1 SINE B4 69 165 0 8 699 26 0 0 0 chr9 15045925 15045951 -109030221 + AT_rich Low_complexity Low_complexity 1 26 0 8 699 230 298 30 50 chr9 15045994 15046093 -109030079 + MLT1A0 LTR MaLR 271 367 -7 8 699 237 333 46 9 chr9 15046093 15046202 -109029970 + MLT1A0-int LTR MaLR 3 115 -1620 8 699 1039 336 94 120 chr9 15046196 15046547 -109029625 + MLT1-int LTR MaLR 263 554 -817 9 699 234 0 0 0 chr9 15046547 15046573 -109029599 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 699 1039 336 94 120 chr9 15046573 15047352 -109028820 + MLT1-int LTR MaLR 555 1363 -8 9 699 198 0 0 0 chr9 15048118 15048140 -109028032 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 9 699 837 208 36 68 chr9 15048147 15048369 -109027803 + B3 SINE B2 1 215 -1 9 699 690 270 117 29 chr9 15050329 15050638 -109025534 - MLT1C LTR MaLR -131 336 1 9 699 1116 49 0 47 chr9 15051101 15051244 -109024928 + B1_Mm SINE Alu 1 137 -10 9 699 222 0 25 50 chr9 15051244 15051284 -109024888 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 699 533 241 37 152 chr9 15051420 15051664 -109024508 + ID_B1 SINE B4 3 218 -6 9 699 2657 116 12 12 chr9 15051839 15052250 -109023922 - RMER6A LTR ERVK 0 756 346 9 699 290 332 63 32 chr9 15052245 15052497 -109023675 - RMER17C LTR ERVK -42 368 109 9 699 1407 137 46 5 chr9 15052623 15052968 -109023204 - RMER6A LTR ERVK -355 401 1 1 699 278 254 0 0 chr9 15053270 15053329 -109022843 + B1F1 SINE Alu 82 140 -9 1 699 306 273 35 89 chr9 15053500 15053669 -109022503 - MIRc SINE MIR -70 198 39 1 699 245 265 184 48 chr9 15055175 15055278 -109020894 + PB1D10 SINE Alu 1 117 0 1 699 531 246 87 0 chr9 15055311 15055437 -109020735 + B1F2 SINE Alu 7 143 -6 1 699 219 183 37 0 chr9 15055442 15055524 -109020648 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 1 699 215 169 83 10 chr9 15055539 15055596 -109020576 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 1 699 327 85 0 0 chr9 15055596 15055643 -109020529 + (CATA)n Simple_repeat Simple_repeat 4 50 0 1 699 215 167 85 12 chr9 15055643 15055845 -109020327 + (TAGA)n Simple_repeat Simple_repeat 1 216 0 1 699 343 254 26 0 chr9 15055864 15055978 -109020194 + (TAGA)n Simple_repeat Simple_repeat 3 119 0 1 699 1043 135 0 11 chr9 15056136 15056316 -109019856 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 1 699 261 0 0 0 chr9 15056316 15056345 -109019827 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 699 216 0 0 0 chr9 15056345 15056369 -109019803 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 699 1178 75 0 0 chr9 15056380 15056526 -109019646 + B1_Mus2 SINE Alu 2 147 0 1 699 252 111 0 0 chr9 15056533 15056578 -109019594 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 1 699 198 347 51 0 chr9 15056696 15056794 -109019378 - L2b LINE L2 -2 3373 3271 1 699 249 282 96 8 chr9 15057575 15057700 -109018472 - B1F1 SINE Alu -9 140 5 1 699 26 0 0 0 chr9 15057815 15057841 -109018331 + AT_rich Low_complexity Low_complexity 1 26 0 1 699 815 200 12 30 chr9 15058335 15058500 -109017672 + RSINE1 SINE B4 2 163 -2 1 699 233 241 37 0 chr9 15058644 15058697 -109017475 - MER21B LTR ERV1 -205 658 604 1 699 696 211 149 0 chr9 15058697 15058872 -109017300 + B3 SINE B2 1 201 -15 1 699 627 337 129 19 chr9 15058857 15059166 -109017006 - MER21B LTR ERV1 -208 655 313 1 699 640 292 23 0 chr9 15059203 15059374 -109016798 - MER21B LTR ERV1 -604 259 85 1 699 249 302 11 75 chr9 15059411 15059504 -109016668 - MER21B LTR ERV1 -774 89 3 1 699 506 246 107 0 chr9 15059612 15059734 -109016438 - RSINE1 SINE B4 -28 137 3 1 699 1128 176 171 4 chr9 15059953 15060204 -109015968 - MTD LTR MaLR -1 418 126 1 699 2287 175 24 62 chr9 15060178 15060713 -109015459 - RMER17B LTR ERVK -442 516 2 1 699 271 290 31 87 chr9 15061236 15061463 -109014709 + L2c LINE L2 2949 3169 -257 1 699 924 255 40 28 chr9 15062356 15062606 -109013566 - B4A SINE B4 -1 291 39 1 699 719 220 102 30 chr9 15063650 15063847 -109012325 + B3 SINE B2 1 211 -5 1 699 1057 88 94 6 chr9 15064395 15064555 -109011617 - B2_Mm2 SINE B2 -4 191 18 1 699 1194 55 0 20 chr9 15064643 15064792 -109011380 - B1_Mus2 SINE Alu 0 147 2 1 699 1781 117 190 9 chr9 15064800 15065127 -109011045 - ORR1B1 LTR MaLR -8 386 1 1 699 299 246 14 0 chr9 15065582 15065651 -109010521 - ID4_ SINE ID -13 70 1 1 699 350 298 60 15 chr9 15065813 15065946 -109010226 - B1F SINE Alu -9 140 2 1 699 384 239 215 7 chr9 15067123 15067258 -109008914 - RSINE1 SINE B4 0 165 3 1 699 265 301 81 89 chr9 15067384 15067508 -109008664 + B1F SINE Alu 1 123 -26 1 699 27 0 0 0 chr9 15067612 15067639 -109008533 + AT_rich Low_complexity Low_complexity 1 27 0 1 699 1088 102 0 0 chr9 15067656 15067803 -109008369 - B1_Mus2 SINE Alu 0 147 1 1 699 197 338 85 57 chr9 15068421 15068669 -109007503 + L2 LINE L2 53 307 -3112 1 699 287 213 208 24 chr9 15069641 15069766 -109006406 + B1F SINE Alu 2 149 0 1 699 401 274 26 26 chr9 15070215 15070331 -109005841 + RSINE1 SINE B4 22 137 -28 1 699 200 222 0 0 chr9 15070632 15070677 -109005495 + T-rich Low_complexity Low_complexity 1 45 0 1 699 618 156 101 0 chr9 15070677 15070786 -109005386 - PB1D9 SINE Alu 0 120 1 1 699 430 263 0 17 chr9 15070796 15070912 -109005260 - PB1D7 SINE Alu -6 114 1 1 699 1161 82 0 0 chr9 15070989 15071136 -109005036 + B1_Mus1 SINE Alu 2 148 0 1 699 330 343 38 9 chr9 15071436 15071542 -109004630 + Charlie12 DNA MER1_type 8 116 -2757 1 699 707 212 151 38 chr9 15071515 15071701 -109004471 - B3A SINE B2 -9 207 1 1 699 344 141 31 0 chr9 15072585 15072649 -109003523 + B1_Mur2 SINE Alu 84 149 0 1 700 852 145 290 18 chr9 15073816 15073985 -109002187 - B3 SINE B2 0 216 2 1 700 347 209 295 0 chr9 15075121 15075226 -109000946 + B1_Mur1 SINE Alu 2 137 -12 1 700 250 270 16 0 chr9 15075447 15075510 -109000662 - ID4_ SINE ID -17 66 3 1 700 315 0 0 0 chr9 15075725 15075760 -109000412 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 700 201 39 0 0 chr9 15077303 15077329 -108998843 + (CGTG)n Simple_repeat Simple_repeat 1 26 0 1 700 724 309 19 87 chr9 15077418 15077727 -108998445 + RLTR18 LTR ERVK 33 320 -296 1 700 1088 253 83 33 chr9 15077772 15078074 -108998098 + RLTR18B LTR ERVK 192 508 -4 1 700 683 277 130 0 chr9 15078081 15078312 -108997860 - Lx8 LINE L1 -249 7224 6964 1 700 240 185 342 1 chr9 15078414 15078503 -108997669 + B1F SINE Alu 7 119 -1 1 700 301 260 55 0 chr9 15079162 15079235 -108996937 + PB1D10 SINE Alu 34 110 -7 1 700 261 268 110 0 chr9 15079347 15079429 -108996743 + B1F2 SINE Alu 40 130 -19 1 700 479 245 39 0 chr9 15080061 15080163 -108996009 - PB1D10 SINE Alu -7 110 5 1 700 701 291 48 75 chr9 15080647 15080940 -108995232 + B4A SINE B4 8 292 0 1 700 575 250 139 6 chr9 15081730 15081895 -108994277 - B3A SINE B2 -8 190 4 1 700 231 184 0 0 chr9 15082651 15082689 -108993483 - B1_Mus1 SINE Alu -110 38 1 1 700 674 81 88 18 chr9 15082722 15082835 -108993337 - B1_Mus2 SINE Alu 0 147 27 1 700 22 0 0 0 chr9 15083232 15083254 -108992918 + AT_rich Low_complexity Low_complexity 1 22 0 1 700 1322 94 0 27 chr9 15083254 15083440 -108992732 - B2_Mm2 SINE B2 -14 181 1 1 700 252 0 0 0 chr9 15083809 15083837 -108992335 + (A)n Simple_repeat Simple_repeat 1 28 0 1 700 261 98 0 0 chr9 15084535 15084576 -108991596 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1 700 644 245 80 0 chr9 15084696 15084847 -108991325 - MTEa LTR MaLR -204 175 13 1 700 497 42 56 14 chr9 15085503 15085575 -108990597 - B1_Mur4 SINE Alu -1 149 75 1 700 438 267 86 6 chr9 15086088 15086250 -108989922 - B3A SINE B2 -23 175 1 1 700 393 304 134 18 chr9 15086369 15086533 -108989639 + LTR52 LTR ERVL 216 398 -23 1 700 451 271 36 61 chr9 15087174 15087339 -108988833 + RLTR9A2 LTR ERVK 223 383 0 1 700 1410 85 0 31 chr9 15087364 15087559 -108988613 - B2_Mm2 SINE B2 -5 190 2 1 700 967 131 14 7 chr9 15087611 15087757 -108988415 + B1_Mus1 SINE Alu 1 147 -1 1 700 21 57 0 0 chr9 15087824 15087859 -108988313 + AT_rich Low_complexity Low_complexity 1 35 0 1 700 246 128 0 0 chr9 15089119 15089158 -108987014 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 700 263 345 46 0 chr9 15089535 15089622 -108986550 - PB1D10 SINE Alu -5 112 22 1 700 402 184 0 50 chr9 15089649 15089729 -108986443 - ID4 SINE ID -3 80 5 1 700 878 179 7 0 chr9 15089959 15090104 -108986068 + B3 SINE B2 4 149 -67 1 700 277 206 142 85 chr9 15090387 15090493 -108985679 - PB1D9 SINE Alu -3 117 6 1 700 480 215 18 36 chr9 15090610 15090721 -108985451 + ID_B1 SINE B4 77 185 -39 1 700 274 314 177 28 chr9 15090719 15090750 -108985422 + ID_B1 SINE B4 54 153 -71 1 700 372 247 215 0 chr9 15090750 15090843 -108985329 + B1_Mur1 SINE Alu 1 113 -36 1 700 1878 195 12 34 chr9 15090848 15091256 -108984916 + RMER10A LTR ERVL 3 401 -41 1 700 442 307 58 0 chr9 15091314 15091451 -108984721 + RSINE1 SINE B4 2 146 -19 1 700 372 43 0 0 chr9 15091451 15091497 -108984675 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 700 284 144 0 32 chr9 15091510 15091634 -108984538 + (TA)n Simple_repeat Simple_repeat 1 119 0 1 700 295 339 34 17 chr9 15091650 15091767 -108984405 - RMER12 LTR ERVK -471 851 733 1 700 382 229 0 57 chr9 15092199 15092287 -108983885 - ID4_ SINE ID 0 83 1 1 700 296 225 0 40 chr9 15092304 15092378 -108983794 - ID4 SINE ID 0 83 13 1 700 331 181 31 41 chr9 15092574 15092672 -108983500 + L1M3 LINE L1 4387 4483 -1657 1 700 298 302 23 98 chr9 15092788 15092920 -108983252 - RSINE1 SINE B4 0 165 44 1 700 259 312 62 0 chr9 15092943 15093007 -108983165 + RSINE1 SINE B4 92 159 -6 1 700 577 210 0 0 chr9 15093325 15093425 -108982747 - PB1D9 SINE Alu -20 100 1 1 700 226 173 0 19 chr9 15093540 15093593 -108982579 + T-rich Low_complexity Low_complexity 5 56 0 1 700 1148 76 0 14 chr9 15093594 15093741 -108982431 - B1_Mus1 SINE Alu -2 146 2 1 700 1538 210 145 1 chr9 15093810 15094175 -108981997 - MTD LTR MaLR -14 405 5 1 700 1205 55 7 0 chr9 15094178 15094323 -108981849 + B1_Mus2 SINE Alu 2 147 0 1 700 381 266 52 99 chr9 15094405 15094597 -108981575 - B3 SINE B2 -3 192 10 1 700 262 265 51 21 chr9 15094965 15095061 -108981111 + PB1D10 SINE Alu 13 117 -32 1 700 1223 56 0 0 chr9 15095435 15095579 -108980593 + B1_Mus1 SINE Alu 5 148 0 1 700 219 88 0 0 chr9 15095596 15095630 -108980542 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 700 611 129 26 0 chr9 15095626 15095742 -108980430 + C-rich Low_complexity Low_complexity 2 120 0 2 700 459 0 0 0 chr9 15095751 15095802 -108980370 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 700 1016 109 0 20 chr9 15096690 15096840 -108979332 - B1_Mus1 SINE Alu 0 148 2 2 700 277 222 15 31 chr9 15096894 15096959 -108979213 - ID4 SINE ID -15 68 5 2 700 827 249 83 0 chr9 15097276 15097469 -108978703 - B3 SINE B2 -6 210 2 2 700 216 267 184 72 chr9 15097496 15097621 -108978551 - B1F2 SINE Alu -5 144 6 2 700 189 0 0 0 chr9 15097632 15097653 -108978519 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 700 401 302 126 0 chr9 15097656 15097775 -108978397 - B1F SINE Alu -15 134 1 2 700 713 193 61 48 chr9 15098097 15098244 -108977928 - B1_Mur1 SINE Alu 0 149 1 2 700 404 316 47 83 chr9 15098244 15098270 -108977902 - B4 SINE B4 -202 90 71 2 700 428 269 57 50 chr9 15098317 15098458 -108977714 + B4 SINE B4 63 204 -88 2 700 919 105 0 0 chr9 15098351 15098475 -108977697 + B1_Mur4 SINE Alu 10 133 -17 2 700 273 264 132 0 chr9 15098484 15098575 -108977597 + PB1D9 SINE Alu 12 114 -6 2 700 1114 78 0 0 chr9 15098580 15098721 -108977451 + B1_Mus1 SINE Alu 2 142 -6 2 700 428 12 0 80 chr9 15098721 15098809 -108977363 + (GAA)n Simple_repeat Simple_repeat 1 81 0 2 700 721 198 216 22 chr9 15099565 15099746 -108976426 - B3 SINE B2 0 216 1 2 700 279 0 0 0 chr9 15099756 15099787 -108976385 + (TTA)n Simple_repeat Simple_repeat 1 31 0 2 700 1182 68 0 0 chr9 15099788 15099936 -108976236 - B1_Mus1 SINE Alu 0 148 1 2 700 24 67 0 0 chr9 15100223 15100268 -108975904 + AT_rich Low_complexity Low_complexity 1 45 0 2 700 712 232 171 17 chr9 15100373 15100606 -108975566 - B4A SINE B4 -22 270 2 2 700 612 248 90 0 chr9 15100642 15100787 -108975385 - RSINE1 SINE B4 -4 161 4 2 700 783 157 112 33 chr9 15101409 15101562 -108974610 + B3 SINE B2 3 167 -31 2 700 189 0 0 0 chr9 15101562 15101583 -108974589 + (CATA)n Simple_repeat Simple_repeat 2 22 0 2 700 599 213 117 56 chr9 15101583 15101608 -108974564 + B3A SINE B2 168 192 -6 2 700 1212 91 33 44 chr9 15102649 15102832 -108973340 - B2_Mm2 SINE B2 -14 181 1 2 700 1076 201 179 63 chr9 15102929 15103231 -108972941 + ORR1C1 LTR MaLR 2 338 -40 2 700 334 311 201 17 chr9 15103480 15103719 -108972453 + L1ME3 LINE L1 5873 6155 -7 2 700 236 30 30 0 chr9 15103782 15103815 -108972357 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 700 496 252 0 10 chr9 15103815 15103912 -108972260 - B1_Mur2 SINE Alu -7 142 47 2 700 2649 60 22 14 chr9 15104024 15104379 -108971793 - L1_Mus1 LINE L1 0 6567 6210 2 700 877 48 182 0 chr9 15104398 15104524 -108971648 - B1_Mur4 SINE Alu 0 150 2 2 700 1023 224 28 5 chr9 15104532 15104743 -108971429 - B3 SINE B2 0 216 1 2 700 458 85 0 12 chr9 15104976 15105083 -108971089 - B2_Mm2 SINE B2 -7 188 47 2 700 1391 51 11 11 chr9 15105095 15105273 -108970899 - B2_Mm1t SINE B2 -13 180 3 2 700 23 0 0 0 chr9 15105451 15105474 -108970698 + AT_rich Low_complexity Low_complexity 1 23 0 2 700 922 142 13 7 chr9 15105611 15105760 -108970412 + B1_Mur4 SINE Alu 1 150 0 2 700 261 250 14 14 chr9 15106132 15106201 -108969971 + CT-rich Low_complexity Low_complexity 4 72 0 2 700 1662 27 0 0 chr9 15106569 15106757 -108969415 - B2_Mm1a SINE B2 -4 189 2 2 700 613 212 108 14 chr9 15106804 15106952 -108969220 - RSINE1 SINE B4 0 165 4 2 700 23 33 0 0 chr9 15107206 15107236 -108968936 + AT_rich Low_complexity Low_complexity 1 30 0 2 700 280 254 37 72 chr9 15107683 15107806 -108968366 - B2_Mm2 SINE B2 -78 120 1 2 700 385 239 0 0 chr9 15107850 15107921 -108968251 - RSINE1 SINE B4 -5 160 90 2 700 230 179 0 0 chr9 15108076 15108115 -108968057 - PB1 SINE Alu -60 67 29 2 700 306 286 43 43 chr9 15108504 15108621 -108967551 - PB1D7 SINE Alu -1 119 3 2 700 716 110 200 17 chr9 15108729 15108849 -108967323 - B1_Mur4 SINE Alu -7 143 2 2 700 214 335 201 0 chr9 15109228 15109392 -108966780 - MIRb SINE MIR -19 249 53 2 700 642 207 20 67 chr9 15109395 15109545 -108966627 + B1_Mur3 SINE Alu 1 143 -6 2 700 1159 48 0 14 chr9 15110202 15110350 -108965822 + B1_Mus2 SINE Alu 2 147 0 2 700 585 309 30 6 chr9 15111304 15111470 -108964702 - B3 SINE B2 -4 212 43 2 700 1136 22 22 0 chr9 15111502 15111637 -108964535 - B1_Mm SINE Alu -8 139 2 2 700 331 250 92 20 chr9 15111944 15112042 -108964130 - B3A SINE B2 -30 168 64 2 700 346 178 105 38 chr9 15112317 15112422 -108963750 - PB1D9 SINE Alu -7 113 2 2 700 211 378 31 0 chr9 15114050 15114148 -108962024 - PB1D7 SINE Alu -13 107 7 2 700 210 308 59 17 chr9 15114104 15114223 -108961949 - B4 SINE B4 -154 138 15 2 700 246 205 221 35 chr9 15114529 15114615 -108961557 - PB1D9 SINE Alu -8 112 11 2 700 1614 26 5 0 chr9 15115337 15115526 -108960646 + B2_Mm1t SINE B2 2 191 -2 2 700 453 202 162 9 chr9 15115682 15115787 -108960385 - B2_Mm2 SINE B2 -73 122 2 2 700 284 214 214 43 chr9 15116572 15116689 -108959483 - B3 SINE B2 -7 209 73 2 700 566 129 0 21 chr9 15116717 15116812 -108959360 + B1_Mus1 SINE Alu 1 93 -55 2 700 1963 152 280 4 chr9 15117562 15118098 -108958074 - RMER6A LTR ERVK -13 743 60 2 700 339 171 70 47 chr9 15120231 15120317 -108955855 + RLTR25B LTR ERVK 422 509 -519 2 700 764 58 10 0 chr9 15120255 15120358 -108955814 + B1_Mus2 SINE Alu 43 146 -1 2 700 1148 48 7 0 chr9 15120378 15120523 -108955649 + B1_Mus1 SINE Alu 2 147 -1 2 700 1148 48 7 0 chr9 15120542 15120687 -108955485 + B1_Mus1 SINE Alu 2 147 -1 2 700 1207 34 0 26 chr9 15120707 15120858 -108955314 + B1_Mus1 SINE Alu 2 148 0 2 700 28 48 0 0 chr9 15121368 15121410 -108954762 + AT_rich Low_complexity Low_complexity 1 42 0 2 700 268 93 188 0 chr9 15121728 15121782 -108954390 + L1_Mur2 LINE L1 3758 3821 -2059 2 700 21 36 0 0 chr9 15122277 15122305 -108953867 + AT_rich Low_complexity Low_complexity 1 28 0 2 700 1105 82 0 0 chr9 15123193 15123340 -108952832 + B1_Mus2 SINE Alu 1 147 0 2 700 247 292 0 14 chr9 15124226 15124299 -108951873 + tRNA-Leu-TTA(m) tRNA tRNA 2 73 -5 2 700 1220 102 23 0 chr9 15124457 15124633 -108951539 + B2_Mm2 SINE B2 2 181 -14 2 700 459 46 313 9 chr9 15124651 15124758 -108951414 + B2_Mm2 SINE B2 47 189 -6 2 700 219 224 0 0 chr9 15126514 15126550 -108949622 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 700 1224 34 0 20 chr9 15126550 15126699 -108949473 - B1_Mus1 SINE Alu -2 146 1 2 700 219 224 0 0 chr9 15126699 15126720 -108949452 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 700 180 0 0 0 chr9 15127752 15127772 -108948400 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 700 28 29 0 0 chr9 15129219 15129254 -108946918 + AT_rich Low_complexity Low_complexity 1 35 0 2 700 491 262 16 54 chr9 15129289 15129418 -108946754 - RSINE1 SINE B4 -15 150 27 2 700 2199 94 6 16 chr9 15129426 15129741 -108946431 + ORR1A2 LTR MaLR 16 327 0 2 700 360 0 0 0 chr9 15130786 15130826 -108945346 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 700 28 0 0 0 chr9 15131455 15131483 -108944689 + AT_rich Low_complexity Low_complexity 1 28 0 2 700 288 237 0 0 chr9 15132041 15132100 -108944072 + B1F2 SINE Alu 29 87 -62 2 700 324 288 223 6 chr9 15132492 15132649 -108943523 - B3A SINE B2 0 198 8 2 700 1066 72 0 0 chr9 15132813 15132951 -108943221 + B1_Mus2 SINE Alu 1 138 -9 2 700 446 318 30 0 chr9 15133395 15133527 -108942645 + B1F1 SINE Alu 14 149 0 2 700 256 132 0 54 chr9 15134274 15134330 -108941842 + PB1D10 SINE Alu 65 117 0 2 700 492 283 24 30 chr9 15134646 15134810 -108941362 - RSINE1 SINE B4 -1 164 2 2 700 459 272 110 27 chr9 15135465 15135684 -108940488 + RMER5 LTR ERV1 281 517 -17 2 700 25 0 0 0 chr9 15139778 15139803 -108936369 + AT_rich Low_complexity Low_complexity 1 25 0 2 700 238 344 155 6 chr9 15141555 15141716 -108934456 - L2b LINE L2 -182 3205 3020 2 700 186 278 190 51 chr9 15142097 15142313 -108933859 - L2a LINE L2 0 3426 3181 2 700 21 0 0 0 chr9 15143068 15143089 -108933083 + AT_rich Low_complexity Low_complexity 1 21 0 2 700 423 0 0 0 chr9 15143762 15143809 -108932363 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 700 201 156 0 0 chr9 15143892 15143924 -108932248 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 2 700 300 325 59 42 chr9 15144054 15144173 -108931999 - PB1 SINE Alu 0 127 7 2 700 186 43 0 0 chr9 15144608 15144631 -108931541 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 2 700 697 182 16 8 chr9 15144643 15144770 -108931402 - RSINE1 SINE B4 -36 129 2 2 700 183 152 0 0 chr9 15145485 15145531 -108930641 + A-rich Low_complexity Low_complexity 3 48 0 2 700 1615 26 0 5 chr9 15145571 15145761 -108930411 + B2_Mm1a SINE B2 2 190 -3 2 700 555 41 0 51 chr9 15146902 15146980 -108929192 - B1_Mur4 SINE Alu 0 150 77 2 700 1032 78 144 0 chr9 15147881 15148048 -108928124 + B2_Mm2 SINE B2 2 192 -3 2 700 1090 236 114 6 chr9 15148114 15148455 -108927717 + MTE2b LTR MaLR 2 379 0 3 700 323 175 362 0 chr9 15148881 15148961 -108927211 - PB1D9 SINE Alu -9 111 3 3 700 701 152 128 8 chr9 15149101 15149234 -108926938 - B1_Mur4 SINE Alu 0 150 2 3 700 273 250 142 62 chr9 15149415 15149577 -108926595 - B2_Mm2 SINE B2 -15 180 6 3 700 251 330 57 89 chr9 15150120 15150243 -108925929 + MT2B LTR ERVL 123 241 -360 3 700 521 237 0 0 chr9 15150167 15150264 -108925908 + PB1D9 SINE Alu 11 107 -13 3 700 262 0 0 50 chr9 15150264 15150304 -108925868 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 3 700 1021 106 0 27 chr9 15150314 15150460 -108925712 + B2_Mm2 SINE B2 4 145 -50 3 700 432 0 0 0 chr9 15150475 15150523 -108925649 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 700 870 234 31 23 chr9 15150723 15150921 -108925251 + B3 SINE B2 1 195 0 3 700 390 265 112 0 chr9 15151557 15151655 -108924517 - PB1D10 SINE Alu 0 117 9 3 700 246 246 30 15 chr9 15152216 15152282 -108923890 - ID SINE ID -153 71 5 3 700 1127 58 0 0 chr9 15152796 15152933 -108923239 - B1_Mus1 SINE Alu -10 138 2 3 700 201 322 65 22 chr9 15153154 15153246 -108922926 + MIRb SINE MIR 104 199 -69 3 700 744 158 113 0 chr9 15153853 15153986 -108922186 + B1_Mus1 SINE Alu 1 148 0 3 700 339 247 165 0 chr9 15154799 15154896 -108921276 - PB1D10 SINE Alu 0 117 5 3 700 22 0 0 0 chr9 15155202 15155224 -108920948 + AT_rich Low_complexity Low_complexity 1 22 0 3 700 657 215 14 43 chr9 15155727 15155868 -108920304 - B1_Mur2 SINE Alu -8 141 5 3 700 272 309 71 39 chr9 15156685 15156725 -108919447 - B4A SINE B4 -46 246 87 3 700 517 278 26 0 chr9 15156725 15156840 -108919332 - B1F2 SINE Alu -30 119 2 3 700 324 0 0 0 chr9 15157757 15157793 -108918379 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 700 1348 67 67 0 chr9 15157932 15158110 -108918062 + B2_Mm2 SINE B2 1 190 -5 3 700 831 238 191 17 chr9 15158418 15158820 -108917352 + Lx8 LINE L1 7001 7472 -1 3 700 1687 226 56 13 chr9 15159691 15160081 -108916091 - MTD LTR MaLR 0 419 13 3 700 1240 48 0 0 chr9 15160788 15160935 -108915237 - B1_Mus2 SINE Alu 0 147 1 3 700 916 25 41 0 chr9 15161167 15161288 -108914884 + B1_Mus2 SINE Alu 22 147 0 3 700 248 223 52 164 chr9 15161750 15161790 -108914382 - ID_B1 SINE B4 -21 203 85 3 700 399 225 11 53 chr9 15161790 15161884 -108914288 - PB1D7 SINE Alu -27 93 4 3 700 198 0 0 0 chr9 15162323 15162345 -108913827 + (CACG)n Simple_repeat Simple_repeat 4 25 0 3 700 583 127 33 25 chr9 15163615 15163736 -108912436 + Lx LINE L1 6531 6652 -2 3 700 226 227 197 13 chr9 15163748 15163824 -108912348 - MLT1H LTR MaLR -383 166 77 3 700 182 324 40 0 chr9 15163852 15163926 -108912246 + MIRc SINE MIR 151 227 -41 3 700 244 364 41 41 chr9 15164003 15164149 -108912023 + MLT1K LTR MaLR 156 301 -294 3 700 557 216 112 0 chr9 15164347 15164472 -108911700 - B1_Mur2 SINE Alu 0 149 11 3 700 261 319 210 5 chr9 15164540 15164726 -108911446 + MIR SINE MIR 12 235 -27 3 700 914 139 7 0 chr9 15164783 15164920 -108911252 - B1_Mur2 SINE Alu -7 142 5 3 700 665 343 43 4 chr9 15165117 15165351 -108910821 - B4A SINE B4 -2 290 48 3 700 334 269 54 85 chr9 15165495 15165625 -108910547 - MTEa LTR MaLR -1 378 253 3 700 236 341 52 73 chr9 15165918 15166054 -108910118 + B4 SINE B4 65 197 -95 3 700 549 273 14 21 chr9 15165956 15166098 -108910074 + B1F2 SINE Alu 9 149 0 3 700 194 0 39 0 chr9 15166100 15166126 -108910046 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 3 700 884 189 126 0 chr9 15166308 15166499 -108909673 + B3 SINE B2 2 216 0 3 700 589 241 131 42 chr9 15166853 15167039 -108909133 + B3 SINE B2 1 203 -13 3 700 279 0 0 0 chr9 15167039 15167070 -108909102 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 700 337 200 144 21 chr9 15167304 15167401 -108908771 + B1F SINE Alu 24 132 -17 3 700 4451 122 64 13 chr9 15167401 15168107 -108908065 + Lx LINE L1 5913 6654 0 3 700 258 259 0 0 chr9 15168310 15168368 -108907804 - ID4_ SINE ID 0 83 26 3 700 2169 80 5 133 chr9 15168681 15168987 -108907185 + ORR1A4 LTR MaLR 1 282 -47 3 700 1237 61 0 0 chr9 15168987 15169134 -108907038 + B1_Mus2 SINE Alu 1 147 0 3 700 2169 80 5 133 chr9 15169134 15169204 -108906968 + ORR1A4 LTR MaLR 283 329 0 3 700 1994 150 44 3 chr9 15170117 15170458 -108905714 - ORR1B2 LTR MaLR -10 357 3 3 700 314 213 40 13 chr9 15170666 15170742 -108905430 - ID4_ SINE ID -5 78 1 3 700 237 325 26 0 chr9 15170922 15170999 -108905173 - MIRb SINE MIR -19 249 171 3 700 269 307 60 17 chr9 15171513 15171629 -108904543 + MER5A1 DNA MER1_type 7 127 -39 3 700 197 271 33 17 chr9 15171832 15171892 -108904280 - MER5B DNA MER1_type -28 150 90 3 700 570 29 0 0 chr9 15172895 15172963 -108903209 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 700 2000 117 27 6 chr9 15173113 15173448 -108902724 + RLTR9A LTR ERVK 3 344 -24 3 700 2743 102 44 2 chr9 15173541 15173975 -108902197 + RLTR44E LTR ERVK 1 452 0 3 700 3060 88 113 22 chr9 15173975 15174477 -108901695 + RLTR44-int LTR ERVK 1 548 -2264 3 700 11070 40 49 2 chr9 15174471 15176393 -108899779 + RLTR44-int LTR ERVK 816 2812 0 3 700 3211 85 9 39 chr9 15176393 15176859 -108899313 + RLTR44E LTR ERVK 1 452 0 3 700 246 107 35 18 chr9 15177025 15177082 -108899090 + A-rich Low_complexity Low_complexity 1 58 0 3 700 5482 139 70 40 chr9 15177130 15178223 -108897949 + ETnERV2-int LTR ERVK 1066 2191 -5215 3 700 13439 156 64 27 chr9 15178359 15181443 -108894729 + RMER16-int LTR ERVK 1472 4154 -1252 3 700 3804 118 42 19 chr9 15181443 15182328 -108893844 + RLTR13C1 LTR ERVK 1 1111 -3 3 700 316 283 48 32 chr9 15182351 15182475 -108893697 + ETnERV2-int LTR ERVK 6086 6211 -1195 3 700 404 244 175 12 chr9 15182552 15182718 -108893454 + ETnERV2-int LTR ERVK 6233 6425 -981 3 700 7083 69 6 2 chr9 15182747 15183637 -108892535 + RLTR13B1 LTR ERVK 1 893 0 3 700 21 0 0 0 chr9 15183785 15183806 -108892366 + AT_rich Low_complexity Low_complexity 1 21 0 3 700 1759 111 79 3 chr9 15183838 15184128 -108892044 + RLTR9A LTR ERVK 57 368 0 3 700 228 135 0 0 chr9 15185409 15185446 -108890726 + B3A SINE B2 1 37 -161 3 700 605 225 22 34 chr9 15186086 15186250 -108889922 - RMER20B LTR ERVK -356 160 1 3 700 297 272 76 19 chr9 15186321 15186426 -108889746 - MIRb SINE MIR -134 134 24 3 700 732 260 72 80 chr9 15186936 15187373 -108888799 + MT2B LTR ERVL 1 538 -63 3 700 316 225 62 0 chr9 15187499 15187579 -108888593 + MIRc SINE MIR 60 144 -124 3 700 21 0 0 0 chr9 15187824 15187845 -108888327 + AT_rich Low_complexity Low_complexity 1 21 0 3 700 279 0 0 0 chr9 15187892 15187923 -108888249 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 700 621 253 113 0 chr9 15188345 15188495 -108887677 - B4 SINE B4 -124 168 2 3 700 520 310 38 12 chr9 15189535 15189695 -108886477 + B4 SINE B4 15 178 -114 3 700 2557 127 116 2 chr9 15189699 15190165 -108886007 - RMER15 LTR ERVL -2 573 55 3 700 1147 71 0 0 chr9 15190211 15190351 -108885821 - B1_Mus1 SINE Alu -8 140 1 3 700 285 29 0 0 chr9 15191022 15191056 -108885116 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 700 609 275 165 4 chr9 15191167 15191397 -108884775 - RMER21B LTR ERV1 -277 565 299 3 700 331 309 10 0 chr9 15191852 15191949 -108884223 - MER5B DNA MER1_type -80 98 1 3 700 287 280 40 0 chr9 15192110 15192185 -108883987 - ID SINE ID -141 83 6 3 700 252 156 0 22 chr9 15192552 15192598 -108883574 + RMER20B LTR ERVK 375 419 -208 3 700 483 272 53 137 chr9 15193349 15193635 -108882537 + ORR1E LTR MaLR 4 265 -105 3 700 355 270 105 53 chr9 15195447 15195580 -108880592 - RSINE1 SINE B4 -25 140 1 3 700 1533 53 5 0 chr9 15195585 15195773 -108880399 - B2_Mm1a SINE B2 -3 190 2 3 700 24 0 0 0 chr9 15197491 15197515 -108878657 + AT_rich Low_complexity Low_complexity 1 24 0 3 700 699 115 24 39 chr9 15197567 15197694 -108878478 - B1_Mus2 SINE Alu 0 147 23 3 700 780 273 114 29 chr9 15197809 15198115 -108878057 + ORR1D2 LTR MaLR 1 332 -38 3 700 613 296 64 32 chr9 15198553 15198804 -108877368 - B4A SINE B4 -1 291 33 3 700 545 288 20 40 chr9 15199294 15199493 -108876679 + RMER10B LTR ERVL 194 388 -10 3 700 322 261 88 62 chr9 15199548 15199740 -108876432 + ORR1D2 LTR MaLR 174 370 0 3 700 346 296 18 33 chr9 15199899 15200395 -108875777 + GA-rich Low_complexity Low_complexity 1 488 0 3 700 294 326 7 14 chr9 15200154 15200300 -108875872 + (TGG)n Simple_repeat Simple_repeat 3 147 0 3 700 273 329 0 7 chr9 15200313 15200454 -108875718 + (TGG)n Simple_repeat Simple_repeat 3 142 0 3 700 1900 174 26 52 chr9 15200455 15200842 -108875330 + ORR1C1 LTR MaLR 2 378 0 3 700 2156 173 55 8 chr9 15200912 15201313 -108874859 + MTC LTR MaLR 1 420 -1 3 700 181 230 8 54 chr9 15202172 15202301 -108873871 + GA-rich Low_complexity Low_complexity 3 125 0 3 700 318 205 0 0 chr9 15202458 15202536 -108873636 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 700 7953 53 10 3 chr9 15202544 15203865 -108872307 - L1Md_F2 LINE L1 -12 6570 5246 3 700 333 0 0 0 chr9 15203865 15203902 -108872270 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 700 7043 52 11 2 chr9 15203902 15204138 -108872034 - L1Md_F2 LINE L1 -638 5245 5002 3 87 7001 62 3 0 chr9 15204137 15205019 -108871153 + L1Md_F2 LINE L1 4126 5010 -873 3 701 783 234 145 72 chr9 15205251 15205512 -108870660 + MTEa LTR MaLR 3 283 -96 3 701 1395 228 82 3 chr9 15205512 15205855 -108870317 + ORR1D2 LTR MaLR 1 370 0 3 701 783 234 145 72 chr9 15205855 15205938 -108870234 + MTEa LTR MaLR 284 372 -7 3 701 293 117 112 35 chr9 15206432 15206670 -108869502 + (CAGTG)n Simple_repeat Simple_repeat 1 256 0 4 701 705 260 71 40 chr9 15207821 15208145 -108868027 - RLTR20B3 LTR ERVK -189 388 55 4 701 403 317 64 34 chr9 15208332 15208573 -108867599 - MLT1H LTR MaLR -257 292 1 4 701 2324 173 39 5 chr9 15208786 15209192 -108866980 + MTC LTR MaLR 1 420 -1 4 701 1362 273 42 53 chr9 15209425 15209951 -108866221 + RMER5 LTR ERV1 15 534 0 4 701 891 265 152 10 chr9 15210253 15210550 -108865622 - Lx8 LINE L1 -147 7326 6988 4 701 887 129 18 30 chr9 15211079 15211247 -108864925 + URR1B DNA MER1_type 60 225 0 4 701 391 309 36 0 chr9 15211825 15211935 -108864237 + B3A SINE B2 2 115 -83 4 701 528 16 0 0 chr9 15211945 15212006 -108864166 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 701 342 98 0 103 chr9 15212283 15212351 -108863821 - ETnERV2-int LTR ERVK -19 7387 7327 4 701 267 214 80 20 chr9 15212558 15212658 -108863514 - ETnERV2-int LTR ERVK -984 6422 6317 4 701 602 220 0 45 chr9 15212774 15212907 -108863265 - ETnERV2-int LTR ERVK -1179 6227 6101 4 701 13159 153 52 45 chr9 15212919 15213620 -108862552 - ETnERV2-int LTR ERVK -1230 4176 3471 4 701 4267 58 40 9 chr9 15213620 15214163 -108862009 - LTRIS2 LTR ERV1 0 564 5 4 701 14896 153 52 45 chr9 15214163 15214772 -108861400 - ETnERV2-int LTR ERVK -3317 4089 3921 4 701 340 81 68 0 chr9 15214772 15214846 -108861326 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 701 14896 154 44 60 chr9 15214846 15214923 -108861249 - ETnERV2-int LTR ERVK -3486 3920 3860 4 701 1745 115 27 68 chr9 15214923 15215259 -108860913 - RLTRETN_Mm LTR ERVK 0 322 1 4 701 14896 154 44 60 chr9 15215259 15215608 -108860564 - ETnERV2-int LTR ERVK -3547 3859 3530 4 701 1633 37 0 0 chr9 15215608 15215796 -108860376 + B2_Mm1a SINE B2 2 189 -4 4 701 14896 154 44 60 chr9 15215796 15218276 -108857896 - ETnERV2-int LTR ERVK -3877 3529 1067 4 701 443 60 15 0 chr9 15218332 15218399 -108857773 + (TTTTA)n Simple_repeat Simple_repeat 3 70 0 4 701 1882 135 27 53 chr9 15218710 15219085 -108857087 - RLTR9A LTR ERVK -3 365 1 4 701 418 318 118 46 chr9 15220324 15220647 -108855525 + MLT1D LTR MaLR 4 349 -156 4 701 1873 95 76 23 chr9 15220778 15221081 -108855091 + ORR1A4 LTR MaLR 3 321 -8 4 701 2271 190 36 79 chr9 15221096 15221651 -108854521 + MT2A LTR ERVL 3 533 0 4 701 735 302 23 19 chr9 15221785 15222045 -108854127 + MTD LTR MaLR 10 270 -149 4 701 532 255 55 7 chr9 15222099 15222245 -108853927 + MTD LTR MaLR 267 419 0 4 701 661 254 98 25 chr9 15222420 15222674 -108853498 + ORR1E LTR MaLR 58 353 -26 4 701 3264 289 108 48 chr9 15222678 15223163 -108853009 + ORR1E-int LTR MaLR 1 523 -1057 4 701 1767 187 81 67 chr9 15223163 15223607 -108852565 + RLTR11A LTR ERVK 1 458 -70 4 701 387 0 0 0 chr9 15223607 15223650 -108852522 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 701 1767 187 81 67 chr9 15223650 15223726 -108852446 + RLTR11A LTR ERVK 459 528 0 4 701 3264 289 108 48 chr9 15223726 15224410 -108851762 + ORR1E-int LTR MaLR 524 1278 -302 4 701 2205 151 20 54 chr9 15224410 15224801 -108851371 - ORR1C1 LTR MaLR 0 378 1 4 701 3264 289 108 48 chr9 15224801 15225046 -108851126 + ORR1E-int LTR MaLR 1279 1499 -81 4 701 236 220 0 20 chr9 15225056 15225107 -108851065 + ORR1E LTR MaLR 1 50 -309 4 701 297 113 0 0 chr9 15227710 15227731 -108848441 + (A)n Simple_repeat Simple_repeat 1 21 0 4 701 1126 49 28 14 chr9 15227731 15227876 -108848296 + B1_Mm SINE Alu 1 147 0 4 701 297 113 0 0 chr9 15227876 15227907 -108848265 + (A)n Simple_repeat Simple_repeat 1 31 0 4 701 522 224 0 0 chr9 15228015 15228113 -108848059 + PB1 SINE Alu 19 116 -11 4 701 408 55 0 0 chr9 15230677 15230732 -108845440 + (CAAAC)n Simple_repeat Simple_repeat 2 56 0 4 701 797 238 17 6 chr9 15230743 15230916 -108845256 - B3 SINE B2 -41 175 1 4 701 259 304 35 18 chr9 15231505 15231619 -108844553 - L1MC4 LINE L1 -157 7885 7770 4 701 214 348 88 41 chr9 15231621 15231768 -108844404 + ID_B1 SINE B4 1 154 -70 4 701 592 317 10 10 chr9 15231978 15232185 -108843987 + MuLV-int LTR ERV1 3249 3455 -4101 4 701 4779 79 184 27 chr9 15232257 15232825 -108843347 + L1VL2 LINE L1 116 825 -5510 4 701 1251 111 5 31 chr9 15232825 15233020 -108843152 + B2_Mm1a SINE B2 3 192 -1 4 701 4779 79 184 27 chr9 15233020 15233062 -108843110 + L1VL2 LINE L1 826 854 -5481 4 701 3150 20 0 0 chr9 15233062 15233408 -108842764 - ORR1A0 LTR MaLR 0 346 1 4 701 6179 74 33 8 chr9 15233408 15234360 -108841812 + L1VL2 LINE L1 855 1820 -1795 4 701 291 292 0 0 chr9 15234510 15234599 -108841573 - PB1D10 SINE Alu -2 115 27 4 701 21 57 0 0 chr9 15235470 15235505 -108840667 + AT_rich Low_complexity Low_complexity 1 35 0 4 701 631 342 15 15 chr9 15235676 15235943 -108840229 + MuLV-int LTR ERV1 3491 3757 -3849 4 701 2214 104 36 6 chr9 15236333 15236690 -108839482 + RLTR9A LTR ERVK 1 368 0 4 701 197 0 71 0 chr9 15237015 15237043 -108839129 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 4 701 208 95 23 23 chr9 15237051 15237094 -108839078 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 701 6678 156 54 58 chr9 15237116 15238497 -108837675 + ETnERV2-int LTR ERVK 1046 2421 -4985 4 701 1141 226 34 31 chr9 15238505 15238797 -108837375 + ETnERV2-int LTR ERVK 2534 2826 -4580 4 701 681 167 14 21 chr9 15238797 15238938 -108837234 + RLTR46 LTR ERVK 1 140 -180 4 701 595 218 22 39 chr9 15238961 15239142 -108837030 + RLTR46 LTR ERVK 126 303 -17 4 701 13110 145 34 43 chr9 15239142 15239395 -108836777 + RMER16-int LTR ERVK 1774 2004 -3402 4 701 1414 87 0 20 chr9 15239395 15239594 -108836578 - B2_Mm2 SINE B2 0 195 1 4 701 13110 145 34 43 chr9 15239594 15240439 -108835733 + RMER16-int LTR ERVK 2005 2873 -2533 4 701 351 0 0 0 chr9 15240439 15240478 -108835694 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 701 13110 145 34 43 chr9 15240478 15240740 -108835432 + RMER16-int LTR ERVK 2874 3102 -2304 4 701 1229 48 0 0 chr9 15240740 15240886 -108835286 - B1_Mm SINE Alu 0 147 2 4 701 13110 145 34 43 chr9 15240886 15241949 -108834223 + RMER16-int LTR ERVK 3103 4176 -1230 4 701 338 215 42 21 chr9 15242210 15242305 -108833867 + ETnERV2-int LTR ERVK 6332 6428 -978 4 701 324 115 0 103 chr9 15242503 15242571 -108833601 + ETnERV2-int LTR ERVK 7327 7387 -19 4 701 2249 115 33 11 chr9 15242584 15242944 -108833228 + RLTR9A LTR ERVK 1 368 0 4 701 1657 338 55 49 chr9 15244957 15246477 -108829695 + MuLV-int LTR ERV1 3778 5305 -2301 4 701 415 304 3 3 chr9 15246622 15246774 -108829398 + MuLV-int LTR ERV1 5381 5603 -2003 4 701 452 299 51 42 chr9 15247879 15248116 -108828056 + RLTR6-int LTR ERV1 7342 7522 -256 4 701 352 83 0 0 chr9 15248886 15248934 -108827238 - ORR1A4 LTR MaLR -8 321 274 4 701 651 67 111 7 chr9 15248945 15249080 -108827092 - RMER17B LTR ERVK -498 460 312 4 701 829 24 8 39 chr9 15249091 15249221 -108826951 - L1Md_F2 LINE L1 -1 6581 6456 4 701 1714 157 19 10 chr9 15249222 15249530 -108826642 - ORR1B1 LTR MaLR -42 352 42 4 701 340 323 0 0 chr9 15249637 15249733 -108826439 + (CATG)n Simple_repeat Simple_repeat 3 98 0 4 701 344 22 0 22 chr9 15250236 15250282 -108825890 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 4 701 674 211 8 8 chr9 15250288 15250422 -108825750 - RSINE1 SINE B4 -29 136 3 4 701 816 305 104 51 chr9 15250548 15251377 -108824795 - L1MC4 LINE L1 -504 7538 6666 4 701 1453 214 71 45 chr9 15251824 15251993 -108824179 - MTEb LTR MaLR -7 372 205 4 701 2303 98 25 9 chr9 15251993 15252313 -108823859 + ORR1A4 LTR MaLR 5 329 0 4 701 1453 214 71 45 chr9 15252313 15252496 -108823676 - MTEb LTR MaLR -175 204 11 4 701 245 226 0 12 chr9 15253204 15253289 -108822883 + GA-rich Low_complexity Low_complexity 2 85 0 4 701 727 286 31 99 chr9 15254889 15255211 -108820961 - MT2A LTR ERVL -172 361 62 4 701 301 336 26 0 chr9 15255133 15255249 -108820923 - MTE2b LTR MaLR -237 142 24 4 701 414 231 22 0 chr9 15256073 15256164 -108820008 - B1F SINE Alu -54 95 3 4 701 243 270 0 16 chr9 15256408 15256472 -108819700 + CT-rich Low_complexity Low_complexity 4 66 0 4 701 2890 0 0 0 chr9 15256619 15256935 -108819237 - L1Md_T LINE L1 0 6582 6267 4 701 503 254 78 11 chr9 15257199 15257378 -108818794 + L1MA5A LINE L1 6102 6292 -5 4 701 344 250 35 18 chr9 15257405 15257519 -108818653 + Lx6 LINE L1 115 230 -7498 4 701 1795 150 18 30 chr9 15257542 15257872 -108818300 - ORR1A4 LTR MaLR 0 329 4 4 701 1139 200 29 42 chr9 15257872 15258180 -108817992 + Lx6 LINE L1 978 1281 -6447 4 701 15504 161 32 98 chr9 15258171 15259634 -108816538 + Lx6 LINE L1 1206 2462 -3418 4 701 297 0 0 0 chr9 15259634 15259667 -108816505 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 4 701 15504 161 32 98 chr9 15259667 15259860 -108816312 + Lx6 LINE L1 2463 2581 -3299 4 701 1092 117 69 53 chr9 15259860 15260049 -108816123 + B2_Mm2 SINE B2 4 195 0 4 701 15504 161 32 98 chr9 15260049 15261999 -108814173 + Lx6 LINE L1 2582 4575 -1305 4 701 1002 72 234 7 chr9 15261999 15262153 -108814019 - B2_Mm2 SINE B2 -6 189 1 4 701 15504 161 32 98 chr9 15262153 15262239 -108813933 + Lx6 LINE L1 4576 4657 -1223 4 701 7732 17 0 0 chr9 15262241 15263105 -108813067 - L1Md_A LINE L1 0 6582 5719 4 701 6683 159 25 20 chr9 15263107 15264416 -108811756 + Lx6 LINE L1 4653 5973 -1487 4 701 1113 135 11 0 chr9 15264416 15264601 -108811571 - URR1A DNA MER1_type 0 226 40 4 701 1452 206 66 9 chr9 15264625 15264973 -108811199 + Lx6 LINE L1 5981 6348 -1112 4 701 1898 161 14 6 chr9 15265619 15265969 -108810203 - RMER4A LTR ERVK 0 466 114 4 701 747 93 0 0 chr9 15266004 15266112 -108810060 + MT2B LTR ERVL 1 108 -493 4 701 357 246 62 103 chr9 15266212 15266407 -108809765 + RLTR23 LTR ERV1 244 430 0 4 701 509 0 16 0 chr9 15266647 15266708 -108809464 + (TCC)n Simple_repeat Simple_repeat 1 62 0 4 701 268 273 67 11 chr9 15267572 15267661 -108808511 + L2c LINE L2 3291 3384 -3 4 701 1000 292 14 17 chr9 15267850 15268139 -108808033 - B4A SINE B4 0 292 5 4 701 245 258 20 51 chr9 15268164 15268262 -108807910 + MT2B LTR ERVL 163 257 -344 4 701 439 246 110 0 chr9 15268184 15268302 -108807870 + B1F1 SINE Alu 18 148 -1 4 701 274 237 10 10 chr9 15268854 15268902 -108807270 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 701 3910 139 105 42 chr9 15268902 15269662 -108806510 - RLTR13C2 LTR ERVK 0 808 1 4 701 274 237 10 10 chr9 15269662 15269711 -108806461 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 701 517 200 18 0 chr9 15269934 15270044 -108806128 - MTE2b LTR MaLR -8 371 260 4 701 544 228 47 65 chr9 15270073 15270124 -108806048 - MTE2b LTR MaLR -212 167 121 4 701 522 70 0 0 chr9 15270124 15270195 -108805977 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 701 544 228 47 65 chr9 15270195 15270312 -108805860 - MTE2b LTR MaLR -259 120 2 4 701 271 293 103 8 chr9 15270661 15270778 -108805394 - L1M4 LINE L1 -327 5857 5730 4 701 758 268 43 26 chr9 15270957 15271028 -108805144 + MTEb LTR MaLR 1 74 -305 4 701 622 167 100 0 chr9 15271028 15271148 -108805024 - B1_Mus1 SINE Alu -16 132 1 4 701 758 268 43 26 chr9 15271148 15271310 -108804862 + MTEb LTR MaLR 75 237 -142 4 701 1675 218 48 20 chr9 15271280 15271673 -108804499 - MTD LTR MaLR -15 404 1 4 701 604 197 18 114 chr9 15271673 15271839 -108804333 + MTEb LTR MaLR 228 377 -2 4 701 607 181 125 8 chr9 15272365 15272493 -108803679 - B1_Mur3 SINE Alu -5 144 2 4 701 824 270 67 92 chr9 15273190 15273561 -108802611 - MTE2a LTR MaLR -16 363 2 4 701 355 312 191 43 chr9 15273750 15274102 -108802070 + L1ME1 LINE L1 5769 6172 -7 4 701 1035 162 101 2 chr9 15274798 15275077 -108801095 - ORR1B1 LTR MaLR -8 386 1 4 701 443 316 75 12 chr9 15275082 15275322 -108800850 - L1MC LINE L1 -597 5736 5482 4 701 3376 183 54 49 chr9 15275489 15276247 -108799925 + RLTR21 LTR ERVK 1 762 -810 4 701 944 46 8 0 chr9 15276242 15276372 -108799800 - B2_Mm1a SINE B2 0 193 63 4 701 638 241 37 180 chr9 15276373 15276594 -108799578 + RLTR21 LTR ERVK 1145 1315 -257 4 701 378 0 0 0 chr9 15276594 15276636 -108799536 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 701 638 217 24 218 chr9 15276636 15276831 -108799341 + RLTR21 LTR ERVK 1250 1404 0 4 701 1957 149 96 8 chr9 15276895 15277069 -108799103 + ORR1C2 LTR MaLR 1 185 -199 5 701 1170 69 0 0 chr9 15277069 15277243 -108798929 + (TC)n Simple_repeat Simple_repeat 1 174 0 5 701 1957 149 96 8 chr9 15277243 15277421 -108798751 + ORR1C2 LTR MaLR 186 383 -1 5 701 7394 52 12 0 chr9 15278086 15279028 -108797144 + L1_Mus1 LINE L1 5615 6567 0 5 701 337 202 98 98 chr9 15279264 15279396 -108796776 + MT2B LTR ERVL 147 278 -323 5 701 746 134 39 23 chr9 15279291 15279421 -108796751 + B1_Mur3 SINE Alu 17 148 -1 5 701 698 336 18 37 chr9 15279619 15279891 -108796281 + B4A SINE B4 24 290 -2 5 701 868 306 68 46 chr9 15279956 15280395 -108795777 - RLTR11A2 LTR ERVK -60 467 19 5 701 519 224 50 44 chr9 15280404 15280563 -108795609 - RLTR11A2 LTR ERVK -358 169 10 5 701 555 29 0 0 chr9 15280572 15280641 -108795531 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 701 323 282 152 61 chr9 15280641 15280773 -108795399 + MLT2B2 LTR ERVL 228 371 -144 5 701 627 246 126 67 chr9 15281025 15281295 -108794877 + RMER15 LTR ERVL 274 559 -16 5 701 677 371 70 12 chr9 15283150 15283494 -108792678 + MER21B LTR ERV1 28 391 -472 5 701 267 333 57 8 chr9 15283589 15283713 -108792459 + MER21B LTR ERV1 554 683 -180 5 701 238 260 0 0 chr9 15284216 15284266 -108791906 - MIRb SINE MIR -50 218 169 5 701 212 323 98 100 chr9 15284223 15284652 -108791520 + L2a LINE L2 2947 3422 -4 5 701 607 236 111 52 chr9 15285220 15285489 -108790683 - MTEa LTR MaLR -5 374 42 5 701 384 298 109 92 chr9 15285576 15285805 -108790367 - MLT1A0 LTR MaLR 0 365 133 5 701 261 238 107 13 chr9 15285889 15286038 -108790134 - Lx7 LINE L1 -18 7678 7516 5 701 1324 247 28 76 chr9 15286059 15286532 -108789640 - Lx7 LINE L1 -346 7350 6901 5 701 533 304 59 51 chr9 15286547 15286783 -108789389 + MTEa LTR MaLR 3 240 -139 5 701 635 331 63 16 chr9 15286746 15286980 -108789192 + MT2A LTR ERVL 263 509 -24 5 701 929 141 227 5 chr9 15286980 15287165 -108789007 - URR1A DNA MER1_type 0 226 1 5 701 635 331 63 16 chr9 15287165 15287185 -108788987 + MT2A LTR ERVL 510 529 -4 5 701 378 242 39 29 chr9 15287196 15287298 -108788874 - MLT1A0 LTR MaLR -242 123 21 5 701 379 281 71 22 chr9 15288899 15289081 -108787091 - L1MB5 LINE L1 -21 6153 5963 5 701 588 251 68 40 chr9 15289304 15289619 -108786553 - Charlie4a DNA MER1_type -14 494 132 5 701 3375 36 10 0 chr9 15289619 15290011 -108786161 + MTA_Mm LTR MaLR 1 396 0 5 701 588 257 58 70 chr9 15290011 15290046 -108786126 - Charlie4a DNA MER1_type -377 131 98 5 701 1446 239 51 8 chr9 15290150 15290504 -108785668 + MTE2b LTR MaLR 1 369 -10 5 701 287 291 35 11 chr9 15293028 15293115 -108783057 + PB1D10 SINE Alu 1 89 -28 5 701 477 90 0 0 chr9 15293671 15293738 -108782434 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 701 804 162 125 4 chr9 15294209 15294372 -108781800 - B3A SINE B2 -37 179 1 5 701 380 330 103 66 chr9 15294546 15294789 -108781383 + B4A SINE B4 2 253 -39 5 701 1076 147 0 3 chr9 15294838 15295190 -108780982 + (CA)n Simple_repeat Simple_repeat 1 350 0 5 701 197 320 0 0 chr9 15295192 15295242 -108780930 - L2c LINE L2 -72 3315 3266 5 701 251 341 29 50 chr9 15295548 15295687 -108780485 - MLT1G LTR MaLR 0 591 456 5 701 590 202 67 0 chr9 15296511 15296630 -108779542 + B3 SINE B2 1 127 -89 5 701 471 225 43 37 chr9 15296671 15296817 -108779355 - B4A SINE B4 -6 286 133 5 701 468 0 0 0 chr9 15296827 15296879 -108779293 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 701 384 22 0 0 chr9 15296879 15296923 -108779249 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 701 221 243 77 51 chr9 15296942 15297020 -108779152 - RSINE1 SINE B4 -84 81 2 5 701 242 208 62 64 chr9 15297075 15297166 -108779006 - MIRb SINE MIR -32 236 143 5 701 21 95 0 0 chr9 15298223 15298286 -108777886 + GC_rich Low_complexity Low_complexity 1 63 0 5 701 216 329 129 0 chr9 15299012 15299082 -108777090 + MIR3 SINE MIR 87 165 -43 5 701 276 30 0 0 chr9 15299801 15299834 -108776338 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 701 1433 67 0 6 chr9 15299835 15300014 -108776158 - B2_Mm2 SINE B2 -16 179 2 5 701 297 75 0 0 chr9 15303200 15303240 -108772932 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 701 188 292 27 27 chr9 15305317 15305391 -108770781 + MIRb SINE MIR 116 189 -79 5 701 465 220 167 43 chr9 15305502 15305640 -108770532 - RSINE1 SINE B4 0 165 11 5 701 404 214 107 119 chr9 15306587 15306746 -108769426 + MT2B LTR ERVL 100 256 -345 5 701 778 110 0 56 chr9 15306648 15306773 -108769399 + B1_Mus2 SINE Alu 11 128 -19 5 701 333 215 51 0 chr9 15307402 15307481 -108768691 - MLT1C LTR MaLR -7 460 378 5 701 470 125 12 0 chr9 15307639 15307719 -108768453 + (TG)n Simple_repeat Simple_repeat 1 81 0 5 701 570 254 75 91 chr9 15309420 15309562 -108766610 - ID_B1 SINE B4 0 224 70 5 701 198 0 0 0 chr9 15309562 15309584 -108766588 + (ACCG)n Simple_repeat Simple_repeat 3 24 0 5 701 570 254 75 91 chr9 15309584 15309640 -108766532 - ID SINE ID -155 69 29 5 701 293 321 40 79 chr9 15309758 15309812 -108766360 - ID_B1 SINE B4 -1 223 99 5 701 312 308 44 0 chr9 15309812 15309903 -108766269 - PB1D10 SINE Alu -21 96 2 5 701 472 236 196 3 chr9 15309905 15310047 -108766125 - B3A SINE B2 -19 176 1 5 701 577 118 33 8 chr9 15311146 15311266 -108764906 + C-rich Low_complexity Low_complexity 2 124 0 5 701 230 250 75 64 chr9 15312587 15312681 -108763491 + MER113 DNA MER1_type 101 195 -326 5 701 743 214 73 109 chr9 15313481 15313701 -108762471 - B3 SINE B2 -4 212 1 5 701 578 225 18 0 chr9 15313711 15313822 -108762350 - PB1D7 SINE Alu -6 114 2 5 701 271 287 42 58 chr9 15314968 15315134 -108761038 + MIRb SINE MIR 80 244 -24 5 701 345 82 0 0 chr9 15315996 15316045 -108760127 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 701 383 262 346 29 chr9 15316052 15316260 -108759912 - B4A SINE B4 -18 274 1 5 701 235 214 68 7 chr9 15316262 15316408 -108759764 + (CAGT)n Simple_repeat Simple_repeat 3 157 0 5 701 399 229 15 40 chr9 15318182 15318259 -108757913 - L1M2 LINE L1 -653 5659 5586 5 701 1893 154 42 63 chr9 15318259 15318640 -108757532 + ORR1D1 LTR MaLR 1 373 -1 5 701 399 232 9 37 chr9 15318640 15318716 -108757456 - L1M2 LINE L1 -583 5585 5509 5 701 379 285 6 0 chr9 15319287 15319382 -108756790 + PB1D10 SINE Alu 1 99 -21 5 701 684 173 0 0 chr9 15319516 15319666 -108756506 + (CA)n Simple_repeat Simple_repeat 1 150 0 5 701 462 254 388 42 chr9 15322082 15322296 -108753876 + B4 SINE B4 5 292 0 5 701 387 0 0 0 chr9 15322338 15322381 -108753791 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 701 203 256 21 8 chr9 15322887 15322963 -108753209 - MIR SINE MIR -92 176 95 5 701 271 260 27 0 chr9 15323339 15323412 -108752760 - B1F SINE Alu -8 141 67 5 701 330 304 17 0 chr9 15323525 15323640 -108752532 - B1F SINE Alu -22 127 11 5 701 543 320 116 31 chr9 15324214 15324472 -108751700 - B4 SINE B4 -2 290 11 5 701 692 267 87 73 chr9 15324645 15324932 -108751240 - B4A SINE B4 0 292 2 5 701 833 214 19 15 chr9 15325074 15325256 -108750916 + MTD LTR MaLR 1 202 -217 5 701 252 229 0 0 chr9 15325258 15325319 -108750853 + CT-rich Low_complexity Low_complexity 3 63 0 5 701 219 88 0 0 chr9 15325395 15325429 -108750743 + (T)n Simple_repeat Simple_repeat 1 34 0 5 701 358 201 48 0 chr9 15325672 15325748 -108750424 - B3A SINE B2 -80 118 36 5 701 323 274 164 73 chr9 15326221 15326398 -108749774 - L1ME4a LINE L1 -1 6123 5931 5 701 344 208 24 72 chr9 15326649 15326732 -108749440 - ID4_ SINE ID 0 83 5 5 701 206 294 56 56 chr9 15326952 15327024 -108749148 + MIR SINE MIR 28 99 -163 5 701 405 86 0 0 chr9 15327118 15327176 -108748996 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 701 486 320 82 64 chr9 15327183 15327573 -108748599 - L1ME4a LINE L1 -210 5914 5518 5 701 285 253 0 0 chr9 15329325 15329412 -108746760 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 5 701 288 0 0 0 chr9 15331717 15331749 -108744423 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 701 234 278 60 60 chr9 15331786 15331970 -108744202 - L1M1 LINE L1 -379 5921 5738 5 701 380 203 100 13 chr9 15333687 15333837 -108742335 - RMER17C LTR ERVK -136 274 112 5 701 392 308 42 60 chr9 15333872 15334038 -108742134 - RSINE1 SINE B4 0 165 3 5 702 333 0 0 0 chr9 15336054 15336091 -108740081 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 5 702 184 304 58 10 chr9 15338343 15338446 -108737726 + L2a LINE L2 2153 2260 -1159 5 702 1772 194 84 20 chr9 15338922 15339326 -108736846 - RMER10A LTR ERVL -12 430 1 5 702 244 268 112 35 chr9 15339328 15339539 -108736633 + L2a LINE L2 2954 3184 -191 5 702 255 268 58 67 chr9 15339555 15339659 -108736513 - MIRc SINE MIR -77 191 89 5 702 236 250 42 0 chr9 15339756 15339828 -108736344 + MIRc SINE MIR 177 251 -17 5 702 196 288 60 36 chr9 15340590 15340673 -108735499 - MIRc SINE MIR -17 251 167 5 702 435 19 0 0 chr9 15341250 15341302 -108734870 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 702 366 23 0 0 chr9 15341302 15341344 -108734828 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 702 582 218 139 29 chr9 15341820 15342028 -108734144 - MER33 DNA MER1_type -46 278 48 5 702 428 331 40 0 chr9 15342039 15342214 -108733958 - B3A SINE B2 -16 182 1 5 702 231 340 87 4 chr9 15342728 15342880 -108733292 - MIRm SINE MIR -87 181 23 5 702 321 89 0 0 chr9 15342974 15343019 -108733153 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 702 494 277 100 6 chr9 15344666 15344826 -108731346 - Charlie10a DNA MER1_type -73 207 33 5 702 1384 222 153 22 chr9 15345329 15345689 -108730483 + MTD LTR MaLR 13 419 0 5 702 257 226 0 0 chr9 15347801 15347854 -108728318 + MLT1N2 LTR MaLR 499 551 -11 5 702 275 232 29 0 chr9 15348204 15348273 -108727899 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 702 651 251 176 58 chr9 15348309 15348721 -108727451 - RMER15 LTR ERVL -6 569 29 6 702 360 244 93 16 chr9 15348793 15348922 -108727250 - B4A SINE B4 -152 140 2 6 702 306 0 0 0 chr9 15349446 15349480 -108726692 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 702 6510 49 18 0 chr9 15352477 15353271 -108722901 - RLTR13C2 LTR ERVK 0 808 1 6 702 3757 63 11 51 chr9 15353450 15353983 -108722189 - RLTR1B LTR ERV1 0 512 1 6 702 261 330 34 8 chr9 15355264 15355383 -108720789 + L1MEf LINE L1 1168 1289 -4911 6 702 1189 48 7 0 chr9 15355524 15355670 -108720502 - B1_Mm SINE Alu 0 147 1 6 702 362 279 115 18 chr9 15356223 15356573 -108719599 + L1M3 LINE L1 5131 5517 -774 6 702 388 236 169 0 chr9 15356604 15356752 -108719420 - B4A SINE B4 -117 175 3 6 702 403 267 33 0 chr9 15357257 15357377 -108718795 - L1MD1 LINE L1 -1 6241 6118 6 702 1057 190 53 10 chr9 15357544 15357751 -108718421 - B3 SINE B2 0 216 1 6 702 977 260 32 45 chr9 15357812 15358245 -108717927 - L1MD1 LINE L1 -812 5430 4993 6 702 777 299 90 0 chr9 15358261 15358529 -108717643 - B4A SINE B4 0 292 1 6 702 307 271 44 61 chr9 15358532 15358646 -108717526 - PB1D10 SINE Alu -2 115 4 6 702 1334 241 87 3 chr9 15358843 15359189 -108716983 + MTE2a LTR MaLR 1 375 -4 6 702 441 307 126 59 chr9 15359285 15359524 -108716648 + Tigger5 DNA MER2_type 2152 2406 0 6 702 697 285 60 73 chr9 15359530 15360076 -108716096 - L1MD1 LINE L1 -1407 4739 4201 6 702 1369 92 16 0 chr9 15360080 15360265 -108715907 - B2_Mm2 SINE B2 -7 188 1 6 702 770 285 208 23 chr9 15360275 15360746 -108715426 - Lx8 LINE L1 -113 7360 6803 6 702 813 164 45 19 chr9 15360746 15360901 -108715271 + URR1A DNA MER1_type 1 159 -67 6 702 462 231 47 99 chr9 15360748 15360940 -108715232 - CYRA11_Mm Unknown Y-chromosome -233 384 203 6 702 1116 282 52 25 chr9 15360940 15361264 -108714908 - Lx8 LINE L1 -687 6786 6454 6 702 202 220 0 0 chr9 15361354 15361404 -108714768 + T-rich Low_complexity Low_complexity 2 51 0 6 702 826 66 205 0 chr9 15361406 15361528 -108714644 - B1_Mm SINE Alu 0 147 1 6 702 228 35 0 0 chr9 15361826 15361855 -108714317 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 6 702 190 164 36 0 chr9 15361862 15361917 -108714255 + CT-rich Low_complexity Low_complexity 1 57 0 6 702 579 66 0 0 chr9 15361917 15361993 -108714179 + (TTTTC)n Simple_repeat Simple_repeat 2 77 0 6 702 321 134 29 29 chr9 15362021 15362090 -108714082 - L1M5 LINE L1 -3098 3048 2980 6 702 869 271 20 32 chr9 15362293 15362545 -108713627 - MLT1C LTR MaLR -1 466 218 6 702 384 292 34 19 chr9 15362527 15362650 -108713522 + MLT1A1 LTR MaLR 319 467 0 6 702 487 265 12 58 chr9 15362731 15362903 -108713269 - RSINE1 SINE B4 0 165 2 6 702 270 0 0 0 chr9 15363369 15363399 -108712773 + (TATG)n Simple_repeat Simple_repeat 4 33 0 6 702 645 143 0 0 chr9 15363440 15363531 -108712641 - B2_Mm2 SINE B2 -103 92 2 6 702 2483 173 38 79 chr9 15363573 15364157 -108712015 - RLTR20B2 LTR ERVK 0 560 1 6 702 939 296 54 11 chr9 15364464 15364744 -108711428 - B4A SINE B4 0 292 1 6 702 450 0 0 0 chr9 15364800 15364850 -108711322 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 702 480 122 0 0 chr9 15366292 15366374 -108709798 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 702 27 73 0 0 chr9 15366523 15366578 -108709594 + AT_rich Low_complexity Low_complexity 1 55 0 6 702 420 290 94 24 chr9 15366614 15366741 -108709431 - ID_B1 SINE B4 -7 217 82 6 702 363 298 153 0 chr9 15367894 15368018 -108708154 + B1F SINE Alu 3 145 -4 6 702 461 236 121 8 chr9 15368126 15368250 -108707922 + B1_Mur2 SINE Alu 10 147 -2 6 702 1531 175 123 29 chr9 15368509 15368850 -108707322 - ORR1D1 LTR MaLR 0 374 2 6 702 218 298 161 44 chr9 15369391 15369528 -108706644 - MIRb SINE MIR -23 245 93 6 702 558 130 138 124 chr9 15369786 15369870 -108706302 - Lx9 LINE L1 -1 7643 7569 6 702 3424 35 5 0 chr9 15369870 15370264 -108705908 - MTA_Mm LTR MaLR 0 396 1 6 702 558 130 138 124 chr9 15370264 15370389 -108705783 - Lx9 LINE L1 -76 7568 7431 6 702 2738 198 173 0 chr9 15370390 15371048 -108705124 + Lx9 LINE L1 6650 7421 -223 6 702 363 220 0 0 chr9 15371809 15371900 -108704272 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 702 868 156 27 131 chr9 15372812 15372971 -108703201 - B3A SINE B2 0 198 59 6 702 2796 36 45 0 chr9 15372971 15373302 -108702870 + ORR1A0 LTR MaLR 1 346 0 6 702 14364 47 12 0 chr9 15373302 15375073 -108701099 + ORR1A0-int LTR MaLR 1 1792 0 6 702 3054 29 0 0 chr9 15375073 15375415 -108700757 + ORR1A0 LTR MaLR 1 342 -4 6 702 868 156 27 131 chr9 15375415 15375474 -108700698 - B3A SINE B2 -140 58 3 6 702 485 198 24 18 chr9 15376032 15376197 -108699975 + (CATA)n Simple_repeat Simple_repeat 4 169 0 6 702 259 271 0 27 chr9 15376224 15376334 -108699838 + (CATA)n Simple_repeat Simple_repeat 2 108 0 6 702 982 108 65 0 chr9 15376729 15376868 -108699304 - B1_Mus1 SINE Alu 0 148 1 6 702 812 274 58 5 chr9 15377993 15378198 -108697974 + B3 SINE B2 1 216 0 6 702 1293 112 16 0 chr9 15378289 15378476 -108697696 + B2_Mm2 SINE B2 1 190 -5 6 702 29 0 0 0 chr9 15379946 15379975 -108696197 + AT_rich Low_complexity Low_complexity 1 29 0 6 702 723 214 107 102 chr9 15380191 15380348 -108695824 + B3A SINE B2 1 163 -32 6 702 366 23 0 0 chr9 15380348 15380391 -108695781 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 702 448 214 107 102 chr9 15380391 15380420 -108695752 + B2_Mm2 SINE B2 164 188 -7 6 702 330 333 10 10 chr9 15380858 15380961 -108695211 - L1M2 LINE L1 -1079 5064 4962 6 702 480 35 0 0 chr9 15381305 15381363 -108694809 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 702 847 210 22 38 chr9 15382120 15382303 -108693869 + B3 SINE B2 4 183 -33 6 702 804 244 32 54 chr9 15382634 15382855 -108693317 + B3 SINE B2 1 216 0 6 702 318 261 105 48 chr9 15383001 15383110 -108693062 + PB1D10 SINE Alu 1 116 -4 6 702 420 252 31 20 chr9 15383442 15383555 -108692617 + MLT1C LTR MaLR 1 115 -275 6 702 434 278 168 34 chr9 15385143 15385322 -108690850 - B3 SINE B2 -12 204 2 6 702 272 221 13 0 chr9 15385875 15385952 -108690220 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 702 28 0 0 0 chr9 15386292 15386320 -108689852 + AT_rich Low_complexity Low_complexity 1 28 0 6 702 236 286 48 0 chr9 15387179 15387263 -108688909 + C-rich Low_complexity Low_complexity 3 90 0 6 702 217 375 18 0 chr9 15389028 15389140 -108687032 - PB1D10 SINE Alu -2 115 2 6 702 600 50 0 0 chr9 15389269 15389349 -108686823 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 6 702 572 287 44 6 chr9 15390577 15390735 -108685437 - RSINE1 SINE B4 0 165 2 6 702 533 165 28 0 chr9 15391457 15391566 -108684606 + (CAGAGA)n Simple_repeat Simple_repeat 2 113 0 6 702 824 138 73 0 chr9 15391569 15391692 -108684480 - B1_Mur4 SINE Alu -18 132 1 6 702 370 315 129 10 chr9 15391913 15391994 -108684178 + RMER15 LTR ERVL 336 415 -160 6 702 414 0 0 0 chr9 15391994 15392040 -108684132 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 702 370 315 129 10 chr9 15392040 15392160 -108684012 + RMER15 LTR ERVL 416 560 -15 6 702 853 156 58 29 chr9 15392792 15392964 -108683208 - B2_Mm2 SINE B2 -10 185 9 6 702 234 0 0 0 chr9 15393162 15393188 -108682984 + (T)n Simple_repeat Simple_repeat 1 26 0 6 702 227 244 0 82 chr9 15394764 15394849 -108681323 - RLTR25A LTR ERVK -504 599 522 6 702 635 185 0 16 chr9 15394773 15394894 -108681278 - B1_Mur3 SINE Alu -29 120 2 6 702 316 204 8 150 chr9 15394778 15394911 -108681261 - MT2B LTR ERVL -335 266 153 6 702 979 261 0 9 chr9 15394918 15395131 -108681041 - B3 SINE B2 0 216 6 6 702 577 230 168 36 chr9 15395391 15395558 -108680614 - B3A SINE B2 -5 193 5 6 702 397 97 0 27 chr9 15395866 15395940 -108680232 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 702 576 152 0 48 chr9 15396028 15396194 -108679978 + (CA)n Simple_repeat Simple_repeat 1 158 0 6 702 477 158 0 52 chr9 15396229 15396383 -108679789 + (CA)n Simple_repeat Simple_repeat 1 146 0 6 702 282 56 0 0 chr9 15396428 15396464 -108679708 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 702 344 59 0 19 chr9 15396689 15396741 -108679431 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 702 2337 255 140 11 chr9 15396993 15397877 -108678295 + Lx8 LINE L1 6325 7322 -151 6 702 410 117 13 0 chr9 15397888 15397956 -108678216 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 702 207 0 0 0 chr9 15397956 15397979 -108678193 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 702 410 117 13 0 chr9 15397979 15397987 -108678185 + (TC)n Simple_repeat Simple_repeat 2 9 0 6 702 294 239 0 0 chr9 15398040 15398174 -108677998 + (CA)n Simple_repeat Simple_repeat 1 134 0 6 702 485 213 0 6 chr9 15398216 15398381 -108677791 + (CA)n Simple_repeat Simple_repeat 1 164 0 6 702 282 266 0 103 chr9 15398429 15398555 -108677617 + Lx8 LINE L1 7356 7468 -5 6 702 1217 258 176 24 chr9 15400101 15400771 -108675401 + Charlie5 DNA MER1_type 1814 2585 -39 6 702 705 278 65 5 chr9 15400781 15400980 -108675192 + ID_B1 SINE B4 12 222 -2 6 702 3460 40 35 16 chr9 15401800 15402234 -108673938 - L1Md_F2 LINE L1 0 6582 6141 6 702 207 0 0 0 chr9 15402304 15402327 -108673845 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 702 1160 75 0 0 chr9 15402327 15402465 -108673707 - B1_Mus2 SINE Alu -8 139 2 6 702 351 0 0 0 chr9 15402489 15402528 -108673644 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 702 369 217 26 94 chr9 15402564 15402681 -108673491 - B4A SINE B4 -58 234 126 6 702 389 20 20 0 chr9 15404918 15404968 -108671204 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 702 360 243 9 30 chr9 15404978 15405095 -108671077 - PB1D10 SINE Alu 0 117 6 6 702 274 294 0 0 chr9 15406154 15406222 -108669950 + B3A SINE B2 16 83 -115 6 702 22 0 0 0 chr9 15406288 15406310 -108669862 + AT_rich Low_complexity Low_complexity 1 22 0 6 702 322 303 84 0 chr9 15406339 15406481 -108669691 + MLT1A LTR MaLR 3 156 -218 6 702 1130 64 147 0 chr9 15406502 15406658 -108669514 + B2_Mm1t SINE B2 1 179 -14 6 702 335 114 319 9 chr9 15406692 15406805 -108669367 + B2_Mm2 SINE B2 48 195 0 6 702 505 228 18 0 chr9 15406820 15406934 -108669238 + PB1D9 SINE Alu 5 120 0 6 702 210 150 0 0 chr9 15406953 15406993 -108669179 + (GGGAGA)n Simple_repeat Simple_repeat 3 42 0 7 702 228 35 0 0 chr9 15406995 15407024 -108669148 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 7 702 563 291 90 60 chr9 15407035 15407269 -108668903 + B4A SINE B4 44 284 -8 7 702 417 39 0 0 chr9 15408114 15408165 -108668007 + (TA)n Simple_repeat Simple_repeat 2 52 0 7 702 25 31 0 0 chr9 15408535 15408567 -108667605 + AT_rich Low_complexity Low_complexity 1 32 0 7 702 416 259 35 9 chr9 15408642 15408755 -108667417 - PB1D10 SINE Alu -1 116 1 7 702 4244 122 153 5 chr9 15408846 15409664 -108666508 + RMER17B LTR ERVK 1 939 -19 7 702 333 0 0 0 chr9 15410313 15410350 -108665822 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 702 716 326 27 19 chr9 15410357 15410620 -108665552 - B4 SINE B4 -21 271 7 7 702 213 108 0 0 chr9 15411844 15411881 -108664291 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 7 702 270 0 0 0 chr9 15413659 15413689 -108662483 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 702 2381 134 40 47 chr9 15416780 15417204 -108658968 - MTC LTR MaLR 0 421 1 7 702 324 0 0 0 chr9 15417227 15417263 -108658909 + (CAA)n Simple_repeat Simple_repeat 2 37 0 7 702 342 259 55 13 chr9 15417264 15417374 -108658798 + B1F1 SINE Alu 13 120 0 7 702 195 333 80 11 chr9 15418015 15418103 -108658069 + L2a LINE L2 3307 3400 -26 7 702 682 304 67 15 chr9 15418971 15419302 -108656870 + MER89 LTR ERV1 3 449 -110 7 702 589 283 92 50 chr9 15419316 15419554 -108656618 + MTEa LTR MaLR 1 248 -131 7 702 384 200 402 0 chr9 15419648 15419845 -108656327 + ORR1D1 LTR MaLR 99 374 0 7 702 717 264 67 193 chr9 15419905 15420505 -108655667 + ORR1D1-int LTR MaLR 1 524 -1056 7 702 213 283 27 45 chr9 15420618 15420729 -108655443 - MIRb SINE MIR -44 224 116 7 702 1084 262 88 79 chr9 15421219 15421829 -108654343 - L1M2 LINE L1 -865 5278 4663 7 702 810 272 150 0 chr9 15421826 15422179 -108653993 + L1MA5 LINE L1 5448 5853 -447 7 702 468 51 0 0 chr9 15422184 15422243 -108653929 + (CAGG)n Simple_repeat Simple_repeat 3 61 0 7 702 317 284 0 81 chr9 15422435 15422582 -108653590 + L1MA5 LINE L1 6166 6296 -1 7 702 622 206 8 0 chr9 15422701 15422832 -108653340 - B1F SINE Alu -2 147 16 7 702 2764 64 6 0 chr9 15422856 15423213 -108652959 + L1_Mus2 LINE L1 6208 6566 0 7 702 472 297 54 22 chr9 15424320 15424643 -108651529 + (CAGG)n Simple_repeat Simple_repeat 1 333 0 7 702 357 281 17 57 chr9 15425648 15425770 -108650402 + MLT1A1 LTR MaLR 240 399 -9 7 702 232 316 51 0 chr9 15426037 15426116 -108650056 - ID4_ SINE ID 0 83 1 7 702 595 184 131 7 chr9 15428124 15428277 -108647895 + MTE2b LTR MaLR 1 172 -207 7 702 333 0 0 0 chr9 15428544 15428581 -108647591 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 702 407 92 15 0 chr9 15428592 15428657 -108647515 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 7 702 368 229 30 96 chr9 15428685 15428820 -108647352 + HAL1 LINE L1 2273 2398 -109 7 702 229 269 63 13 chr9 15429874 15429953 -108646219 - Tigger5 DNA MER2_type -2248 158 76 7 702 257 260 0 0 chr9 15429973 15430046 -108646126 + (CAGG)n Simple_repeat Simple_repeat 1 73 0 7 702 346 318 93 74 chr9 15430077 15430335 -108645837 + MLT1J LTR MaLR 57 319 -193 7 702 396 71 0 0 chr9 15430387 15430443 -108645729 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 702 329 0 24 0 chr9 15431307 15431348 -108644824 + (TGGGGG)n Simple_repeat Simple_repeat 6 47 0 7 702 251 255 171 67 chr9 15431592 15431756 -108644416 + B3A SINE B2 1 181 -17 7 702 291 28 0 0 chr9 15431763 15431799 -108644373 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 702 193 243 18 27 chr9 15431891 15432001 -108644171 + GA-rich Low_complexity Low_complexity 2 110 0 7 702 204 197 38 38 chr9 15432881 15432960 -108643212 + (CATATA)n Simple_repeat Simple_repeat 1 79 0 7 702 3301 5 0 0 chr9 15432965 15433336 -108642836 + L1_Mm LINE L1 5035 5405 -478 7 702 252 264 24 48 chr9 15433338 15433505 -108642667 + (CATATA)n Simple_repeat Simple_repeat 1 163 0 7 702 291 221 26 34 chr9 15433339 15433456 -108642716 + (TA)n Simple_repeat Simple_repeat 2 117 0 7 702 466 159 0 18 chr9 15433507 15433616 -108642556 + (TA)n Simple_repeat Simple_repeat 1 107 0 7 702 783 155 27 27 chr9 15434046 15434192 -108641980 - B1_Mus2 SINE Alu -1 146 1 7 702 343 298 26 0 chr9 15434244 15434358 -108641814 - RSINE1 SINE B4 -36 129 13 7 702 2603 164 52 19 chr9 15434806 15434906 -108641266 - RLTR20B2 LTR ERVK 0 560 464 7 702 342 45 0 0 chr9 15434906 15434950 -108641222 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 702 2603 164 52 19 chr9 15434950 15435391 -108640781 - RLTR20B2 LTR ERVK -97 463 2 7 702 7566 145 35 25 chr9 15435392 15436782 -108639390 - MYSERV16_I-int LTR ERVK -1 2325 923 7 702 578 348 17 13 chr9 15436830 15437066 -108639106 + Lx8 LINE L1 7169 7405 -68 7 702 292 288 60 46 chr9 15437353 15437500 -108638672 - L1MC3 LINE L1 -20 7975 7881 7 702 1126 55 7 14 chr9 15437500 15437648 -108638524 - B1_Mm SINE Alu 0 147 1 7 702 248 296 105 123 chr9 15437648 15437882 -108638290 - L1MC3 LINE L1 -144 7641 7389 7 702 914 278 89 78 chr9 15437980 15438608 -108637564 - L1MC3 LINE L1 -583 7202 6568 7 702 623 300 37 21 chr9 15438684 15438926 -108637246 - B4A SINE B4 -41 251 6 7 702 1050 187 44 9 chr9 15438981 15439207 -108636965 - ORR1C1 LTR MaLR 0 378 145 7 702 963 266 56 88 chr9 15439373 15439748 -108636424 + MTE2a LTR MaLR 3 365 -14 7 702 322 271 115 0 chr9 15439817 15439939 -108636233 - L1MC3 LINE L1 -1533 6252 6117 7 702 21 57 0 0 chr9 15440117 15440152 -108636020 + AT_rich Low_complexity Low_complexity 1 35 0 7 702 562 245 7 71 chr9 15440420 15440574 -108635598 + ID_B1 SINE B4 80 223 -1 7 702 22 35 0 0 chr9 15440601 15440630 -108635542 + AT_rich Low_complexity Low_complexity 1 29 0 7 702 361 252 0 46 chr9 15441838 15441946 -108634226 + MLT1A1 LTR MaLR 306 408 0 7 702 493 223 56 28 chr9 15443062 15443242 -108632930 + Lx5 LINE L1 854 1038 -6690 7 702 12998 170 31 24 chr9 15443227 15443981 -108632191 + Lx5 LINE L1 1294 2052 -3828 7 702 537 30 0 0 chr9 15443981 15444048 -108632124 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 702 12998 181 270 17 chr9 15444048 15444642 -108631530 + Lx5 LINE L1 2053 2660 -3220 7 702 4667 109 8 44 chr9 15444642 15445421 -108630751 + RMER17A LTR ERVK 1 751 0 7 702 12998 181 270 17 chr9 15445421 15446211 -108629961 + Lx5 LINE L1 2661 4286 -1594 7 702 360 0 0 0 chr9 15446211 15446251 -108629921 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 702 12998 181 270 17 chr9 15446251 15447762 -108628410 + Lx5 LINE L1 4287 5864 -16 7 702 1803 250 79 1 chr9 15447786 15448388 -108627784 + Lx5 LINE L1 5934 6796 -664 7 702 274 88 0 0 chr9 15448361 15448395 -108627777 + Lx5 LINE L1 6454 6487 -563 7 702 2338 102 16 0 chr9 15448395 15448717 -108627455 + ORR1A2 LTR MaLR 1 327 0 7 702 210 91 0 0 chr9 15450573 15450606 -108625566 + (T)n Simple_repeat Simple_repeat 1 33 0 7 702 2107 271 44 19 chr9 15450748 15451289 -108624883 + Lx5 LINE L1 6478 7032 -18 7 702 864 213 0 0 chr9 15451304 15451468 -108624704 + L1VL4 LINE L1 1 164 -6138 7 702 9952 189 130 15 chr9 15451473 15452494 -108623678 + L1_Mur3 LINE L1 2770 3794 -2086 7 702 270 125 0 0 chr9 15452494 15452542 -108623630 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 702 9952 189 130 15 chr9 15452542 15453848 -108622324 + L1_Mur3 LINE L1 3795 5364 -516 7 702 2447 138 25 5 chr9 15453836 15454236 -108621936 + L1_Mus4 LINE L1 6182 6589 -47 7 702 361 129 14 14 chr9 15454236 15454307 -108621865 + G-rich Low_complexity Low_complexity 4 74 0 7 702 374 248 109 9 chr9 15454633 15454743 -108621429 + B3A SINE B2 1 121 -77 7 702 307 83 16 16 chr9 15454743 15454804 -108621368 + (TATAA)n Simple_repeat Simple_repeat 2 62 0 7 702 590 229 147 11 chr9 15454855 15455045 -108621127 - B3 SINE B2 0 216 1 7 702 188 67 33 0 chr9 15455318 15455348 -108620824 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 7 702 424 283 23 97 chr9 15455355 15455531 -108620641 - RSINE1 SINE B4 0 165 3 7 702 346 41 0 0 chr9 15456112 15456161 -108620011 + Lx2B LINE L1 6945 6993 -7 7 702 231 317 29 109 chr9 15456343 15456481 -108619691 + RLTR24 LTR ERV1 321 447 -82 7 702 815 195 117 10 chr9 15456862 15457059 -108619113 + ID_B1 SINE B4 2 219 -5 7 702 4253 126 39 20 chr9 15458459 15458694 -108617478 - L1_Mur2 LINE L1 -5797 915 679 7 702 6665 96 47 7 chr9 15458694 15459640 -108616532 - RLTR13C1 LTR ERVK 0 983 1 7 702 4253 126 39 20 chr9 15459640 15460102 -108616070 - L1_Mur2 LINE L1 -6034 678 205 7 702 309 169 0 0 chr9 15460282 15460341 -108615831 + (CAA)n Simple_repeat Simple_repeat 2 60 0 7 702 800 258 157 91 chr9 15460961 15461157 -108615015 + MT2A LTR ERVL 1 195 -338 7 702 2916 41 6 0 chr9 15461157 15461501 -108614671 + ORR1A1 LTR MaLR 1 346 0 7 702 800 258 157 91 chr9 15461501 15461731 -108614441 + MT2A LTR ERVL 196 455 -78 7 702 552 101 0 0 chr9 15461731 15461820 -108614352 + (TC)n Simple_repeat Simple_repeat 1 89 0 7 702 261 136 0 0 chr9 15461820 15461864 -108614308 + MT2A LTR ERVL 490 533 0 7 702 457 204 147 29 chr9 15461918 15462054 -108614118 - B3A SINE B2 -45 153 2 7 702 258 323 168 26 chr9 15462085 15462276 -108613896 + MER31B LTR ERV1 61 278 -188 7 702 3187 51 0 25 chr9 15465257 15465657 -108610515 + L1_Mus1 LINE L1 6178 6567 0 7 702 235 45 68 0 chr9 15465667 15465711 -108610461 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 702 315 22 0 0 chr9 15465833 15465878 -108610294 + B1_Mus2 SINE Alu 101 145 -2 7 702 22 35 0 0 chr9 15465956 15465985 -108610187 + AT_rich Low_complexity Low_complexity 1 29 0 7 702 1211 226 63 31 chr9 15465991 15466365 -108609807 + MT2A LTR ERVL 2 501 -100 7 703 705 230 29 0 chr9 15467863 15468002 -108608170 + B1F2 SINE Alu 1 143 -6 7 703 30 59 0 0 chr9 15468066 15468117 -108608055 + AT_rich Low_complexity Low_complexity 1 51 0 7 703 671 260 159 19 chr9 15468629 15468943 -108607229 + ORR1E LTR MaLR 2 359 0 7 703 22 0 0 0 chr9 15469696 15469718 -108606454 + AT_rich Low_complexity Low_complexity 1 22 0 7 703 1176 290 36 77 chr9 15470940 15471163 -108605009 - MLT2B1 LTR ERVL -37 483 281 7 703 2989 145 17 40 chr9 15471163 15471737 -108604435 + RLTR31_Mm LTR ERVK 1 561 0 7 703 1176 290 36 77 chr9 15471737 15472017 -108604155 - MLT2B1 LTR ERVL -240 280 1 7 703 477 64 0 12 chr9 15472794 15472862 -108603310 + L1_Mm LINE L1 5535 5615 -559 7 703 7839 58 14 4 chr9 15472862 15473840 -108602332 + L1Md_F2 LINE L1 5587 6574 -8 7 703 324 214 15 762 chr9 15473840 15473864 -108602308 + L1_Mm LINE L1 5616 5639 -529 7 703 183 49 73 0 chr9 15473877 15473918 -108602254 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 7 703 545 192 116 16 chr9 15475115 15475305 -108600867 - L1M2 LINE L1 -2908 3235 3027 7 703 28 29 0 0 chr9 15475536 15475571 -108600601 + AT_rich Low_complexity Low_complexity 1 35 0 8 703 244 347 10 10 chr9 15476227 15476326 -108599846 + ORSL DNA Tip100 177 275 0 8 703 528 314 25 40 chr9 15476429 15476628 -108599544 - MTEa LTR MaLR -107 272 77 8 703 267 292 42 0 chr9 15476637 15476709 -108599463 - B1F SINE Alu -26 123 49 8 703 858 91 0 0 chr9 15477421 15477542 -108598630 + (TCTCC)n Simple_repeat Simple_repeat 5 125 0 8 703 742 271 55 25 chr9 15477622 15477857 -108598315 - B4A SINE B4 -42 250 9 8 703 3193 156 18 21 chr9 15478601 15479172 -108597000 + RLTR20B3 LTR ERVK 9 577 0 8 703 216 171 0 0 chr9 15479275 15479310 -108596862 + (TGG)n Simple_repeat Simple_repeat 2 36 0 8 703 757 163 59 0 chr9 15479320 15479455 -108596717 + B1_Mus1 SINE Alu 6 148 0 8 703 870 187 150 105 chr9 15479495 15479848 -108596324 - ORR1D2 LTR MaLR 0 370 2 8 703 252 265 86 29 chr9 15480056 15480161 -108596011 - MLT1A1 LTR MaLR -2 406 296 8 703 308 265 41 0 chr9 15481763 15481861 -108594311 + L1M5 LINE L1 5636 5737 -436 8 703 1579 155 91 9 chr9 15481952 15482272 -108593900 - MTD LTR MaLR 0 419 74 8 703 429 20 0 0 chr9 15483403 15483453 -108592719 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 703 261 0 0 0 chr9 15483453 15483481 -108592691 + (CG)n Simple_repeat Simple_repeat 2 30 0 8 703 614 265 88 110 chr9 15483510 15483773 -108592399 - B4A SINE B4 -26 266 10 8 703 330 26 0 0 chr9 15485773 15485812 -108590360 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 703 300 27 0 0 chr9 15487114 15487151 -108589021 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 8 703 261 0 0 0 chr9 15487194 15487223 -108588949 + (TC)n Simple_repeat Simple_repeat 2 30 0 8 703 426 20 0 0 chr9 15487223 15487273 -108588899 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 703 438 167 0 0 chr9 15487900 15487984 -108588188 + GA-rich Low_complexity Low_complexity 1 84 0 8 703 276 30 0 0 chr9 15488316 15488349 -108587823 + (TA)n Simple_repeat Simple_repeat 2 34 0 8 703 238 289 96 102 chr9 15488757 15488934 -108587238 + RMER15 LTR ERVL 360 535 -40 8 703 654 225 156 120 chr9 15488961 15489319 -108586853 + MTE2b LTR MaLR 2 372 -7 8 703 189 0 0 0 chr9 15489557 15489578 -108586594 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 8 703 702 206 0 8 chr9 15490855 15491222 -108584950 + CT-rich Low_complexity Low_complexity 1 363 0 8 703 306 0 0 0 chr9 15491482 15491516 -108584656 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 703 387 0 0 0 chr9 15491516 15491558 -108584614 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 703 3873 190 4 20 chr9 15491600 15492293 -108583879 - Lx5 LINE L1 -187 6863 6182 8 703 337 264 11 0 chr9 15492327 15492418 -108583754 - MER81 DNA AcHobo -14 100 9 8 703 1229 250 3 20 chr9 15493305 15493599 -108582573 + Lx9 LINE L1 7154 7442 -202 8 703 405 0 0 0 chr9 15493599 15493644 -108582528 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 703 333 0 0 0 chr9 15493644 15493680 -108582492 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 703 800 263 42 18 chr9 15493933 15494150 -108582022 + ID_B1 SINE B4 1 222 -2 8 703 416 257 44 0 chr9 15494189 15494302 -108581870 - B3 SINE B2 -98 118 1 8 703 1930 87 55 0 chr9 15495102 15495411 -108580761 + IAPEY2_LTR LTR ERVK 32 357 0 8 703 930 208 81 132 chr9 15495975 15496368 -108579804 + MTE2a LTR MaLR 1 373 -6 8 703 405 274 44 15 chr9 15496478 15496615 -108579557 - ORR1E LTR MaLR -216 143 3 8 703 4515 218 62 52 chr9 15496731 15497867 -108578305 + Lx7 LINE L1 6249 7396 -300 8 703 240 247 25 0 chr9 15497880 15497961 -108578211 + (TA)n Simple_repeat Simple_repeat 2 84 0 8 703 1132 180 122 88 chr9 15497968 15498297 -108577875 + Lx7 LINE L1 7357 7696 0 8 703 24 0 0 0 chr9 15500201 15500225 -108575947 + AT_rich Low_complexity Low_complexity 1 24 0 1 703 2250 152 42 12 chr9 15500225 15500632 -108575540 - Lx LINE L1 0 7058 6640 2 703 275 255 10 96 chr9 15500854 15500958 -108575214 - BC1_Mm scRNA scRNA -54 98 4 3 703 312 64 0 0 chr9 15501032 15501079 -108575093 - Lx LINE L1 -5 6649 6603 2 703 15203 138 32 5 chr9 15501079 15504171 -108572001 - Lx LINE L1 -207 6447 3260 2 703 8364 34 9 3 chr9 15504165 15505293 -108570879 - L1Md_F3 LINE L1 -1 6583 5450 4 703 14052 94 17 13 chr9 15505291 15508164 -108568008 - L1VL2 LINE L1 -635 2980 96 5 703 291 252 9 112 chr9 15508185 15508301 -108567871 - PB1D10 SINE Alu -2 115 12 6 703 360 326 0 100 chr9 15508358 15508518 -108567654 + ID_B1 SINE B4 81 224 0 7 703 476 273 69 48 chr9 15508524 15508755 -108567417 - L1MA9 LINE L1 -30 6282 6047 8 703 392 293 95 26 chr9 15508961 15509220 -108566952 + MLT1A0 LTR MaLR 72 453 -14 9 703 5219 117 60 59 chr9 15509515 15510469 -108565703 + RMER17B LTR ERVK 1 955 -3 1 703 249 308 165 18 chr9 15510697 15510806 -108565366 - PB1 SINE Alu -1 126 2 1 703 288 120 0 0 chr9 15511539 15511589 -108564583 + (CACCAT)n Simple_repeat Simple_repeat 1 50 0 1 703 231 263 94 26 chr9 15512652 15512769 -108563403 - HAL1 LINE L1 -1057 1450 1326 1 703 1461 189 166 8 chr9 15512953 15513315 -108562857 + MTD LTR MaLR 1 419 0 1 703 28 0 0 0 chr9 15513324 15513352 -108562820 + AT_rich Low_complexity Low_complexity 1 28 0 1 703 209 200 50 0 chr9 15514618 15514678 -108561494 + (TCTG)n Simple_repeat Simple_repeat 3 65 0 1 703 344 248 125 25 chr9 15515416 15515536 -108560636 + B1F1 SINE Alu 6 137 -12 1 703 222 318 0 13 chr9 15515627 15515724 -108560448 + B4A SINE B4 3 97 -195 1 703 421 277 23 9 chr9 15516425 15516593 -108559579 + MLT1F1 LTR MaLR 144 320 -228 1 703 423 303 25 0 chr9 15518142 15518264 -108557908 - RSINE1 SINE B4 -38 127 3 2 703 296 293 63 24 chr9 15518703 15518829 -108557343 + MER33 DNA MER1_type 92 222 -102 2 703 224 289 0 0 chr9 15519280 15519356 -108556816 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 703 204 237 0 85 chr9 15520859 15521048 -108555124 + (CAGGA)n Simple_repeat Simple_repeat 3 175 0 2 703 240 250 0 0 chr9 15521624 15521672 -108554500 + L1MC4 LINE L1 1669 1716 -4499 2 703 333 267 165 82 chr9 15522135 15522388 -108553784 - ORR1E LTR MaLR -98 272 1 2 703 772 261 11 0 chr9 15522433 15522613 -108553559 + B3A SINE B2 1 182 -16 2 703 261 288 0 24 chr9 15523608 15523690 -108552482 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 703 564 299 63 26 chr9 15523713 15523981 -108552191 - B4A SINE B4 -12 280 3 2 703 402 289 45 19 chr9 15526991 15527146 -108549026 - RSINE1 SINE B4 0 165 7 2 703 320 261 17 67 chr9 15529560 15529679 -108546493 - PB1D10 SINE Alu -2 115 3 3 703 312 130 43 0 chr9 15530045 15530114 -108546058 + CT-rich Low_complexity Low_complexity 3 74 0 3 703 180 0 0 0 chr9 15530497 15530517 -108545655 + (CCA)n Simple_repeat Simple_repeat 1 20 0 3 703 355 266 104 89 chr9 15533388 15533726 -108542446 - RMER10A LTR ERVL -3 439 97 3 703 798 213 58 5 chr9 15534052 15534241 -108541931 - B3 SINE B2 -3 213 15 3 703 219 333 81 65 chr9 15534264 15534511 -108541661 - B4 SINE B4 -1 291 41 3 703 503 139 16 61 chr9 15535409 15535657 -108540515 + (CA)n Simple_repeat Simple_repeat 1 236 0 3 703 367 152 10 92 chr9 15535736 15535932 -108540240 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 703 209 183 0 16 chr9 15536004 15536065 -108540107 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 703 364 231 16 49 chr9 15536265 15536388 -108539784 + (CA)n Simple_repeat Simple_repeat 2 120 0 3 703 284 321 114 33 chr9 15536392 15536814 -108539358 + L1MD3 LINE L1 6591 7039 -746 4 703 323 208 53 18 chr9 15537179 15537350 -108538822 + (CAGTG)n Simple_repeat Simple_repeat 2 178 0 4 703 576 272 117 50 chr9 15537352 15537669 -108538503 + L1MD3 LINE L1 7658 7995 0 4 703 946 116 0 0 chr9 15537679 15537825 -108538347 + B2_Mm2 SINE B2 1 146 -49 4 703 396 0 0 0 chr9 15537830 15537874 -108538298 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 703 597 241 133 0 chr9 15537955 15538158 -108538014 + B4A SINE B4 1 230 -62 4 703 525 231 44 7 chr9 15538163 15538298 -108537874 + B1_Mur1 SINE Alu 6 145 -4 4 703 205 263 18 0 chr9 15538352 15538409 -108537763 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 703 378 289 7 43 chr9 15541019 15541160 -108535012 - B1F SINE Alu -13 136 1 4 703 371 274 10 0 chr9 15541949 15542051 -108534121 - PB1D10 SINE Alu -8 109 7 4 703 2075 141 126 11 chr9 15543473 15543847 -108532325 - MTD LTR MaLR 0 419 3 4 703 21 0 0 0 chr9 15546924 15546945 -108529227 + AT_rich Low_complexity Low_complexity 1 21 0 5 703 428 268 42 28 chr9 15546947 15547089 -108529083 - RSINE1 SINE B4 -8 157 14 5 703 376 303 20 14 chr9 15547305 15547452 -108528720 + L1MA6 LINE L1 6139 6286 -14 5 703 270 234 13 25 chr9 15547697 15547776 -108528396 + PB1D10 SINE Alu 33 110 -7 5 703 1092 231 64 35 chr9 15548701 15548864 -108527308 - MTD LTR MaLR -14 405 242 5 703 1251 219 18 178 chr9 15548864 15549309 -108526863 - ORR1D1 LTR MaLR 0 374 1 5 703 1092 249 76 83 chr9 15549309 15549565 -108526607 - MTD LTR MaLR -178 241 1 5 703 207 0 0 0 chr9 15550904 15550927 -108525245 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 703 426 171 0 12 chr9 15550935 15551018 -108525154 + Lx7 LINE L1 7615 7696 0 5 703 249 246 15 15 chr9 15552029 15552095 -108524077 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 5 703 234 0 0 0 chr9 15552097 15552123 -108524049 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 703 1329 228 125 6 chr9 15552143 15552496 -108523676 + MTD LTR MaLR 25 419 0 6 703 279 0 0 0 chr9 15552748 15552779 -108523393 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 703 520 279 135 32 chr9 15553206 15553415 -108522757 + L1M4 LINE L1 3556 3795 -2351 6 703 2002 169 65 0 chr9 15553415 15553770 -108522402 - ORR1C1 LTR MaLR 0 378 1 6 703 520 279 135 32 chr9 15553770 15553908 -108522264 + L1M4 LINE L1 3796 3939 -2207 6 703 193 196 0 35 chr9 15554635 15554693 -108521479 + CT-rich Low_complexity Low_complexity 3 58 0 6 703 6442 158 83 5 chr9 15554696 15555833 -108520339 - Lx5 LINE L1 -12 7038 5814 6 703 241 125 0 138 chr9 15555833 15555898 -108520274 + RMER16 LTR ERVK 2 57 -476 6 703 1258 169 27 107 chr9 15555866 15556231 -108519941 + RMER16 LTR ERVK 198 533 0 6 703 1261 105 0 0 chr9 15556238 15556409 -108519763 - Lx5 LINE L1 -1236 5814 5644 6 703 6993 135 19 5 chr9 15556407 15556544 -108519628 + Lx5 LINE L1 4484 4623 -1254 6 703 222 37 0 0 chr9 15556544 15556571 -108519601 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 703 6993 135 19 5 chr9 15556571 15557580 -108518592 + Lx5 LINE L1 4624 5654 -1396 6 703 240 165 114 76 chr9 15557837 15557942 -108518230 - LTR37A LTR ERV1 -3 423 315 6 703 928 306 107 25 chr9 15560054 15560533 -108515639 + L1MC1 LINE L1 5813 6330 -3 7 703 269 343 28 0 chr9 15560613 15560756 -108515416 - MLT1A0 LTR MaLR 0 374 228 7 703 335 308 17 17 chr9 15560815 15560934 -108515238 - MLT1A0 LTR MaLR -246 119 1 7 703 329 299 106 67 chr9 15560945 15561304 -108514868 - MER110A LTR ERV1 -73 395 23 7 703 382 279 12 0 chr9 15561385 15561471 -108514701 + MTD LTR MaLR 33 119 -300 7 703 3896 161 25 21 chr9 15561486 15562299 -108513873 + RLTR22_Mur LTR ERVK 173 988 -860 7 703 1033 156 148 18 chr9 15562470 15562699 -108513473 + RLTR22_Mur LTR ERVK 1590 1848 0 7 703 630 58 0 0 chr9 15563022 15563109 -108513063 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 7 703 1018 125 0 7 chr9 15563109 15563254 -108512918 - B1_Mus1 SINE Alu 0 148 5 7 703 399 127 0 0 chr9 15563293 15563356 -108512816 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 703 288 224 30 0 chr9 15563531 15563598 -108512574 - B4 SINE B4 -221 71 3 7 703 22 0 0 0 chr9 15564250 15564272 -108511900 + AT_rich Low_complexity Low_complexity 1 22 0 7 703 755 270 42 63 chr9 15565084 15565416 -108510756 - L1MB5 LINE L1 -138 6036 5712 8 703 601 239 81 57 chr9 15565450 15565659 -108510513 - B3 SINE B2 0 216 3 8 703 382 336 0 0 chr9 15565671 15565781 -108510391 - PB1D10 SINE Alu -7 110 1 8 703 239 175 18 0 chr9 15565947 15566004 -108510168 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 703 665 300 76 31 chr9 15566046 15566317 -108509855 - B4A SINE B4 -4 288 8 8 703 1328 274 67 39 chr9 15567896 15568362 -108507810 - Lx9 LINE L1 -213 7431 6953 8 703 1901 267 128 45 chr9 15568362 15569213 -108506959 + RMER13A LTR ERVK 1 899 -9 8 703 2184 253 49 13 chr9 15569233 15569782 -108506390 - Lx9 LINE L1 -718 6926 6358 8 703 24 0 0 0 chr9 15569788 15569812 -108506360 + AT_rich Low_complexity Low_complexity 1 24 0 8 703 1022 227 117 0 chr9 15569965 15570221 -108505951 + MTD LTR MaLR 134 419 0 8 703 240 284 34 0 chr9 15570237 15570325 -108505847 + MIR SINE MIR 114 204 -58 8 703 252 0 0 0 chr9 15570556 15570584 -108505588 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 703 393 287 115 0 chr9 15570592 15570714 -108505458 - RSINE1 SINE B4 -21 144 9 9 703 207 0 0 0 chr9 15570767 15570790 -108505382 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 703 187 226 306 0 chr9 15571324 15571386 -108504786 - L4 LINE RTE -203 1826 1746 9 703 603 242 8 8 chr9 15571980 15572113 -108504059 - B1_Mur2 SINE Alu -16 133 1 9 703 240 281 183 30 chr9 15572136 15572470 -108503702 - L1MC3 LINE L1 0 7785 7401 9 703 235 328 106 30 chr9 15572724 15572922 -108503250 - L1MC3 LINE L1 -457 7328 7116 9 703 1115 267 130 34 chr9 15573005 15573481 -108502691 - Lx8 LINE L1 -76 7397 6876 9 703 1008 246 46 14 chr9 15573509 15573789 -108502383 + Lx8 LINE L1 6545 6833 -640 9 703 716 297 49 40 chr9 15573771 15574097 -108502075 - L1MC3 LINE L1 -695 7090 6762 9 703 584 284 136 96 chr9 15574122 15574476 -108501696 + MTD LTR MaLR 9 376 -3 9 703 1570 267 64 17 chr9 15575865 15576348 -108499824 + Lx8 LINE L1 6956 7461 -12 9 703 1318 245 63 133 chr9 15577209 15578292 -108497880 - RMER17B LTR ERVK 0 908 8 1 703 344 238 128 24 chr9 15578444 15578569 -108497603 - MTEa LTR MaLR -2 377 240 1 703 225 0 0 0 chr9 15579057 15579082 -108497090 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 703 814 246 25 15 chr9 15579905 15580103 -108496069 - B3 SINE B2 0 216 17 1 703 400 277 142 116 chr9 15580780 15581168 -108495004 - MER63B DNA AcHobo -2 434 37 1 703 267 31 0 0 chr9 15581258 15581290 -108494882 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 703 2220 98 54 0 chr9 15581297 15581613 -108494559 - Lx3B LINE L1 -5 6968 6636 1 703 241 326 65 11 chr9 15581613 15581706 -108494466 - B1F1 SINE Alu -48 101 4 1 703 324 120 0 0 chr9 15584254 15584304 -108491868 + (CATA)n Simple_repeat Simple_repeat 3 52 0 1 703 653 307 23 14 chr9 15584427 15584642 -108491530 - B4A SINE B4 0 292 76 1 703 409 284 226 20 chr9 15585295 15585575 -108490597 - L1M5 LINE L1 -1403 4743 4455 1 703 1199 50 12 6 chr9 15585575 15585735 -108490437 - L1Md_A LINE L1 0 6582 6422 1 703 409 283 247 17 chr9 15585735 15585966 -108490206 - L1M5 LINE L1 -1692 4454 4130 1 703 1351 107 109 17 chr9 15586029 15586267 -108489905 + RLTR42-int LTR ERVK 3500 3759 -1763 1 703 7325 79 20 15 chr9 15587654 15588643 -108487529 - L1Md_F2 LINE L1 -1 6581 5588 1 703 405 95 0 0 chr9 15588983 15589046 -108487126 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 703 393 317 142 53 chr9 15589053 15589243 -108486929 - ID_B1 SINE B4 -15 209 3 1 703 1961 182 19 6 chr9 15589511 15589871 -108486301 + ORR1B2 LTR MaLR 1 365 -2 1 703 961 290 101 34 chr9 15589933 15590319 -108485853 - MTD LTR MaLR 0 419 8 1 703 687 209 0 0 chr9 15592537 15592676 -108483496 + B1_Mur1 SINE Alu 6 144 -5 1 703 2458 68 0 0 chr9 15593044 15593351 -108482821 + L1_Mus1 LINE L1 6260 6566 -1 1 703 22 0 0 0 chr9 15593358 15593380 -108482792 + AT_rich Low_complexity Low_complexity 1 22 0 1 703 281 320 84 7 chr9 15593659 15593813 -108482359 + LTR82B Low_complexity ERVL 505 670 -160 1 703 664 260 73 11 chr9 15595919 15596098 -108480074 + B4A SINE B4 5 194 -98 1 703 268 281 161 12 chr9 15596847 15597009 -108479163 + L1M5 LINE L1 4475 4660 -1486 1 703 344 313 97 109 chr9 15597370 15597535 -108478637 - B4A SINE B4 -12 280 118 1 87 281 333 0 0 chr9 15597544 15597625 -108478547 + PB1D10 SINE Alu 26 106 -11 1 704 229 180 0 91 chr9 15597583 15597638 -108478534 + ID_B1 SINE B4 175 224 0 1 704 691 346 82 6 chr9 15598319 15598671 -108477501 - MLT1F LTR MaLR -135 413 35 1 704 2041 166 11 3 chr9 15598850 15599218 -108476954 + RMER20B LTR ERVK 10 380 -247 1 704 1612 212 76 56 chr9 15599326 15599735 -108476437 + MTD LTR MaLR 3 419 0 1 704 241 348 78 43 chr9 15599737 15599878 -108476294 - B1F SINE Alu -3 146 1 1 704 633 296 19 66 chr9 15599878 15599967 -108476205 - ID SINE ID -145 79 1 1 704 996 55 86 0 chr9 15600053 15600181 -108475991 + B1_Mus1 SINE Alu 2 140 -8 1 704 877 133 0 14 chr9 15600398 15600543 -108475629 + RLTR14 LTR ERV1 3 145 -237 1 704 530 230 21 21 chr9 15600643 15600785 -108475387 + L1M3 LINE L1 5523 5664 -525 1 704 243 254 16 0 chr9 15600930 15600993 -108475179 + MER57C2 LTR ERV1 4 67 -367 1 704 483 236 45 0 chr9 15601207 15601317 -108474855 + PB1D10 SINE Alu 2 116 -1 1 704 32 43 0 0 chr9 15601621 15601667 -108474505 + AT_rich Low_complexity Low_complexity 1 46 0 1 704 552 263 37 37 chr9 15601674 15601836 -108474336 - RSINE1 SINE B4 0 165 4 1 704 821 342 25 71 chr9 15601836 15602274 -108473898 - MLT2B2 LTR ERVL -79 436 19 1 704 21 0 0 0 chr9 15603045 15603066 -108473106 + AT_rich Low_complexity Low_complexity 1 21 0 1 704 664 214 64 48 chr9 15603114 15603301 -108472871 + ORR1E LTR MaLR 1 190 -169 1 704 816 111 0 0 chr9 15603303 15603429 -108472743 + (TCCC)n Simple_repeat Simple_repeat 4 129 0 1 704 2576 43 0 0 chr9 15603438 15603761 -108472411 + IAPEY2_LTR LTR ERVK 32 354 -3 1 704 477 122 0 0 chr9 15603766 15603840 -108472332 + (TCCC)n Simple_repeat Simple_repeat 1 74 0 1 704 407 303 74 62 chr9 15604461 15604637 -108471535 - B3A SINE B2 0 198 21 1 704 239 239 21 56 chr9 15606137 15606279 -108469893 + (CACAC)n Simple_repeat Simple_repeat 3 139 0 1 704 180 176 0 0 chr9 15606310 15606344 -108469828 + CT-rich Low_complexity Low_complexity 3 36 0 1 704 445 32 32 0 chr9 15606341 15606404 -108469768 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 704 224 175 41 0 chr9 15606771 15606868 -108469304 + GA-rich Low_complexity Low_complexity 2 102 0 1 704 192 40 0 0 chr9 15606899 15606924 -108469248 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 704 354 323 73 18 chr9 15606928 15607092 -108469080 + MTEa LTR MaLR 1 173 -206 1 704 505 278 37 59 chr9 15607376 15607562 -108468610 - MLT1A0 LTR MaLR -44 423 134 1 704 1937 102 77 62 chr9 15607562 15607886 -108468286 - ORR1A4 LTR MaLR 0 329 1 1 704 10925 138 43 56 chr9 15607886 15609874 -108466298 - ORR1A4-int LTR MaLR 0 1963 2 1 704 1827 123 61 52 chr9 15609875 15610201 -108465971 - ORR1A4 LTR MaLR 0 329 1 1 704 505 313 47 82 chr9 15610201 15610251 -108465921 - MLT1A0 LTR MaLR -232 133 89 1 704 33080 87 11 10 chr9 15610800 15616162 -108460010 + L1Md_F2 LINE L1 238 5586 -297 1 704 8113 62 4 10 chr9 15616162 15617163 -108459009 + L1Md_F2 LINE L1 5587 6581 -1 1 704 198 318 115 48 chr9 15617731 15617896 -108458276 + MIRb SINE MIR 79 254 -14 1 704 22 56 0 0 chr9 15618505 15618541 -108457631 + AT_rich Low_complexity Low_complexity 1 36 0 1 704 1294 28 7 0 chr9 15618551 15618696 -108457476 - B1_Mm SINE Alu 0 147 2 1 704 431 306 100 46 chr9 15618766 15619026 -108457146 - B4A SINE B4 -16 276 3 1 704 21 0 0 0 chr9 15619174 15619195 -108456977 + AT_rich Low_complexity Low_complexity 1 21 0 1 704 7548 72 11 10 chr9 15619253 15620527 -108455645 - L1_Mus2 LINE L1 0 6566 5294 1 704 260 238 98 98 chr9 15621015 15621131 -108455041 + PB1D7 SINE Alu 13 124 -3 1 704 231 36 0 0 chr9 15621169 15621197 -108454975 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1 704 292 206 63 0 chr9 15621207 15621270 -108454902 + tRNA-Ala-GCY_ tRNA tRNA 3 69 -6 1 704 380 272 143 71 chr9 15621546 15621720 -108454452 + MER68 LTR ERVL 217 417 -146 1 704 1414 221 104 46 chr9 15621720 15622114 -108454058 + MTD LTR MaLR 1 417 -2 1 704 380 272 143 71 chr9 15622114 15622149 -108454023 + MER68 LTR ERVL 418 441 -122 1 704 550 269 100 141 chr9 15622221 15622668 -108453504 + RMER20B LTR ERVK 14 476 -151 1 704 522 0 0 0 chr9 15625116 15625174 -108450998 + (ATATG)n Simple_repeat Simple_repeat 1 58 0 1 704 24 32 0 0 chr9 15626495 15626526 -108449646 + AT_rich Low_complexity Low_complexity 1 31 0 1 704 3208 86 9 39 chr9 15626533 15626994 -108449178 - L1_Mus3 LINE L1 -1 6637 6191 1 704 263 273 46 46 chr9 15630155 15630328 -108445844 - MERVL-int LTR ERVL -1482 4003 3831 1 704 415 291 38 117 chr9 15630395 15630737 -108445435 - IAP-d-int LTR ERVK -3127 5832 5518 1 704 253 333 0 0 chr9 15630844 15630928 -108445244 - IAP-d-int LTR ERVK -3549 5410 5327 1 704 22 70 0 0 chr9 15631026 15631069 -108445103 + AT_rich Low_complexity Low_complexity 1 43 0 1 704 7078 109 37 4 chr9 15631082 15632034 -108444138 + RLTR13C1 LTR ERVK 1 983 0 1 704 2588 90 0 0 chr9 15632163 15632474 -108443698 - RLTR10E LTR ERVK 0 311 1 1 704 1736 204 14 6 chr9 15632562 15632921 -108443251 - IAPEY3-int LTR ERVK -273 7407 7046 1 704 1563 104 113 0 chr9 15632920 15633151 -108443021 - IAP-d-int LTR ERVK -1279 5263 5007 1 704 751 169 54 40 chr9 15633151 15633410 -108442762 - IAP-d-int LTR ERVK -6039 503 57 1 704 331 89 0 0 chr9 15633380 15633425 -108442747 - RLTR10-int LTR ERVK -1381 606 562 1 704 355 53 105 0 chr9 15633425 15633501 -108442671 + CT-rich Low_complexity Low_complexity 1 84 0 1 704 549 233 35 27 chr9 15633501 15633757 -108442415 - MMERVK10C-int LTR ERVK -6664 917 660 1 704 569 281 7 0 chr9 15633754 15633907 -108442265 - MMERVK10C-int LTR ERVK -7157 424 271 1 704 635 98 22 0 chr9 15633902 15633994 -108442178 - MMERVK10C-int LTR ERVK -7487 94 1 1 704 2155 89 0 0 chr9 15634001 15634282 -108441890 - RLTR10E LTR ERVK -30 281 1 1 704 786 168 9 42 chr9 15634708 15634885 -108441287 - RLTR10E LTR ERVK -155 202 6 1 704 7171 113 14 11 chr9 15635974 15636796 -108439376 - L1_Mus4 LINE L1 0 6636 5808 1 704 1104 116 0 7 chr9 15636796 15636944 -108439228 + B1_Mus1 SINE Alu 2 148 0 1 704 7171 129 10 16 chr9 15636944 15637269 -108438903 - L1_Mus4 LINE L1 -829 5807 5485 1 704 34320 80 9 5 chr9 15637301 15641772 -108434400 - L1Md_F2 LINE L1 -11 6571 2082 1 704 276 30 0 0 chr9 15641772 15641805 -108434367 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1 704 34320 75 8 0 chr9 15641805 15643302 -108432870 - L1Md_F2 LINE L1 -3802 2081 570 1 704 4801 159 33 5 chr9 15643303 15644176 -108431996 - L1_Mm LINE L1 -385 5498 4601 1 704 7382 75 7 10 chr9 15644177 15645638 -108430534 - L1Md_F2 LINE L1 -1 6581 5129 1 704 3784 135 3 38 chr9 15645641 15646297 -108429875 - L1Md_F2 LINE L1 -1268 4615 3983 1 704 378 138 15 0 chr9 15646302 15646367 -108429805 - ETnERV2-int LTR ERVK -984 6422 6357 1 704 1262 185 0 0 chr9 15646363 15646552 -108429620 + ETnERV2-int LTR ERVK 4483 4671 -2735 1 704 6302 275 47 39 chr9 15646548 15650271 -108425901 - ETnERV-int LTR ERVK -2470 3697 12 1 704 2688 79 84 0 chr9 15650293 15650453 -108425719 - RLTR9F LTR ERVK -4 411 244 1 704 290 80 20 0 chr9 15650453 15650503 -108425669 + (CCA)n Simple_repeat Simple_repeat 1 51 0 1 704 2688 79 84 0 chr9 15650503 15650721 -108425451 - RLTR9F LTR ERVK -172 243 3 1 704 3934 82 24 0 chr9 15650822 15651321 -108424851 - L1_Mus1 LINE L1 0 6567 6057 1 704 15327 162 8 166 chr9 15651321 15653416 -108422756 - L1_Mur1 LINE L1 -144 5742 3648 1 704 3832 112 18 33 chr9 15653416 15654046 -108422126 + RLTR5_Mm LTR ERV1 9 628 0 1 704 15327 162 8 166 chr9 15654046 15655305 -108420867 - L1_Mur1 LINE L1 -144 3647 2387 1 704 630 309 30 75 chr9 15655338 15655643 -108420529 + RLTR9A LTR ERVK 78 368 0 1 704 47 33 0 0 chr9 15655718 15655779 -108420393 + AT_rich Low_complexity Low_complexity 1 61 0 1 704 763 285 137 3 chr9 15655779 15656078 -108420094 - Lx8 LINE L1 -2 7471 7133 1 704 3631 307 88 23 chr9 15656358 15657697 -108418475 - L1_Mur3 LINE L1 -11 5869 4416 1 704 3511 33 15 3 chr9 15657697 15658088 -108418084 - MTA_Mm LTR MaLR 0 396 1 1 704 3631 307 88 23 chr9 15658088 15658760 -108417412 - L1_Mur3 LINE L1 -1465 4415 3729 1 704 315 180 165 22 chr9 15659129 15659220 -108416952 - RLTR22_Mur LTR ERVK -716 1132 1029 1 704 1992 233 63 126 chr9 15659212 15660111 -108416061 - RLTR22_Mur LTR ERVK -1005 843 1 1 704 468 261 8 0 chr9 15660151 15660298 -108415874 - L1M2 LINE L1 -2487 4358 4205 1 704 343 300 37 71 chr9 15660374 15660696 -108415476 - L1M2 LINE L1 -4278 2571 2265 1 704 5806 86 63 98 chr9 15660696 15661622 -108414550 + RLTR13B1 LTR ERVK 1 893 0 2 704 343 300 37 71 chr9 15661622 15661734 -108414438 - L1M2 LINE L1 -4585 2264 2152 1 704 653 221 268 7 chr9 15661787 15661899 -108414273 - Lx9 LINE L1 -2 7642 7515 2 704 333 0 0 0 chr9 15661899 15661936 -108414236 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 704 653 221 268 7 chr9 15661936 15662110 -108414062 - Lx9 LINE L1 -130 7514 7282 2 704 706 282 72 41 chr9 15662205 15662523 -108413649 + L1MB1 LINE L1 4948 5275 -865 2 704 539 244 103 42 chr9 15662534 15662643 -108413529 + L1MA6 LINE L1 6021 6131 -169 2 704 183 80 0 0 chr9 15662643 15662668 -108413504 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 704 539 244 103 42 chr9 15662668 15662772 -108413400 + L1MA6 LINE L1 6132 6247 -53 2 704 180 0 0 0 chr9 15662864 15662884 -108413288 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 704 415 262 185 21 chr9 15662931 15663117 -108413055 - MLT1A0 LTR MaLR -4 404 152 2 704 1971 133 48 30 chr9 15663144 15663478 -108412694 - Lx2 LINE L1 0 6997 6658 2 704 2297 84 10 10 chr9 15663478 15663789 -108412383 + Lx2 LINE L1 6371 6681 -316 2 704 353 325 56 60 chr9 15663908 15664160 -108412012 + L1MB1 LINE L1 5356 5606 -577 2 704 416 318 0 14 chr9 15664202 15664357 -108411815 - L1M3 LINE L1 -421 5750 5605 2 704 323 269 77 0 chr9 15664373 15664477 -108411695 + L1MB1 LINE L1 5803 5914 -254 2 704 691 233 0 36 chr9 15664648 15664786 -108411386 + ID_B1 SINE B4 84 216 -8 2 704 271 307 136 0 chr9 15666110 15666181 -108409991 + MIRb SINE MIR 67 154 -114 2 704 420 20 0 0 chr9 15666181 15666230 -108409942 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 704 271 307 136 0 chr9 15666230 15666298 -108409874 + MIRb SINE MIR 155 224 -44 2 704 383 217 65 13 chr9 15666486 15666640 -108409532 + (TG)n Simple_repeat Simple_repeat 1 162 0 2 704 811 262 53 76 chr9 15668067 15668331 -108407841 + B4 SINE B4 24 281 -11 2 704 410 75 0 15 chr9 15668345 15668413 -108407759 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 704 1281 246 7 121 chr9 15668664 15668819 -108407353 + MTD LTR MaLR 18 163 -256 2 704 3453 192 23 6 chr9 15668819 15669480 -108406692 + Lx5 LINE L1 6371 7042 -8 2 704 1281 246 7 121 chr9 15669480 15669778 -108406394 + MTD LTR MaLR 164 419 0 2 704 707 224 119 5 chr9 15670187 15670389 -108405783 + MTEb LTR MaLR 144 368 -11 2 704 3493 68 14 0 chr9 15672646 15673085 -108403087 - L1_Mus1 LINE L1 -1 6566 6122 2 704 983 248 184 3 chr9 15673640 15673960 -108402212 - MTE2b LTR MaLR -1 378 1 2 704 333 0 0 0 chr9 15675341 15675378 -108400794 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 704 713 318 34 37 chr9 15675378 15675646 -108400526 - B4A SINE B4 -23 269 3 2 704 1608 239 5 31 chr9 15676081 15676470 -108399702 + MTEa LTR MaLR 1 379 0 2 704 972 62 0 0 chr9 15676784 15676912 -108399260 + (GGA)n Simple_repeat Simple_repeat 2 129 0 2 704 285 29 0 0 chr9 15677412 15677446 -108398726 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 704 549 68 0 0 chr9 15680167 15680241 -108395931 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 704 799 181 234 20 chr9 15681553 15681596 -108394576 - ORR1C2 LTR MaLR 0 384 343 2 704 2165 162 112 0 chr9 15681596 15681972 -108394200 - MTC LTR MaLR 0 421 4 2 704 799 187 232 20 chr9 15681972 15682204 -108393968 - ORR1C2 LTR MaLR -42 342 3 2 704 23 92 0 0 chr9 15683230 15683295 -108392877 + AT_rich Low_complexity Low_complexity 1 65 0 2 704 686 278 47 0 chr9 15683505 15683674 -108392498 - ID_B1 SINE B4 -40 184 8 2 704 381 275 54 78 chr9 15683743 15683816 -108392356 - Lx9 LINE L1 -49 7595 7522 2 704 698 70 37 25 chr9 15683816 15683977 -108392195 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 2 704 381 275 54 78 chr9 15683977 15684005 -108392167 - Lx9 LINE L1 -123 7521 7499 2 704 1188 57 11 6 chr9 15684005 15684180 -108391992 + (TCTA)n Simple_repeat Simple_repeat 1 176 0 2 704 381 275 54 78 chr9 15684180 15684373 -108391799 - Lx9 LINE L1 -146 7498 7307 2 704 297 0 0 0 chr9 15684931 15684964 -108391208 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 704 4329 170 24 16 chr9 15685057 15685906 -108390266 + Lx2B LINE L1 5872 6726 -274 2 704 423 0 0 0 chr9 15686021 15686068 -108390104 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 704 315 0 0 0 chr9 15686068 15686102 -108390070 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 704 208 169 65 0 chr9 15686105 15686182 -108389990 + CT-rich Low_complexity Low_complexity 1 82 0 2 704 238 292 45 0 chr9 15686956 15687088 -108389084 + MIR SINE MIR 62 200 -62 2 704 322 325 47 23 chr9 15687818 15687947 -108388225 - MER21B LTR ERV1 -147 716 585 2 704 5667 72 4 7 chr9 15688499 15689242 -108386930 + L1Md_F2 LINE L1 5842 6582 0 2 704 254 174 87 0 chr9 15689264 15689333 -108386839 - RCHARR1 DNA MER1_type -518 456 382 2 704 962 248 129 75 chr9 15689335 15689775 -108386397 - RCHARR1 DNA MER1_type -508 466 3 2 704 288 302 196 53 chr9 15689783 15690028 -108386144 + B4 SINE B4 4 283 -9 2 704 21 36 0 0 chr9 15690296 15690324 -108385848 + AT_rich Low_complexity Low_complexity 1 28 0 2 704 186 189 0 0 chr9 15692586 15692623 -108383549 + CT-rich Low_complexity Low_complexity 3 39 0 2 704 1841 212 163 8 chr9 15693056 15693413 -108382759 + RMER19B LTR ERVK 316 740 -162 2 704 267 31 0 0 chr9 15693413 15693445 -108382727 + (CAT)n Simple_repeat Simple_repeat 2 33 0 2 704 1841 212 163 8 chr9 15693445 15693595 -108382577 + RMER19B LTR ERVK 741 901 -1 2 704 10412 52 1 2 chr9 15694508 15695772 -108380400 + L1_Mm LINE L1 4324 5586 -297 2 704 8388 34 4 0 chr9 15695772 15696752 -108379420 + L1Md_F2 LINE L1 5587 6570 -12 2 704 10412 52 1 2 chr9 15696752 15696766 -108379406 + L1_Mm LINE L1 5587 5600 -283 2 704 484 297 126 37 chr9 15698076 15698370 -108377802 + ORR1E LTR MaLR 4 323 -36 2 704 865 244 153 35 chr9 15698399 15698713 -108377459 + ORR1E LTR MaLR 2 352 -7 2 704 1083 255 28 28 chr9 15698721 15699011 -108377161 - MTEa LTR MaLR -46 333 44 2 704 2079 186 69 2 chr9 15699052 15699445 -108376727 - MTD LTR MaLR 0 419 1 2 704 1544 237 94 0 chr9 15700603 15700975 -108375197 - MTD LTR MaLR -12 407 1 2 704 288 339 58 17 chr9 15703708 15703882 -108372290 - MLT1C LTR MaLR -85 382 202 2 704 394 266 58 58 chr9 15704154 15704342 -108371830 - Lx5 LINE L1 -1352 6108 5921 2 704 913 269 130 18 chr9 15704819 15705149 -108371023 + RMER13A LTR ERVK 98 464 -396 2 704 189 0 0 0 chr9 15705174 15705195 -108370977 + (C)n Simple_repeat Simple_repeat 1 21 0 2 704 1660 148 178 93 chr9 15705495 15705670 -108370502 - Lx5 LINE L1 -1115 5935 5784 2 704 570 29 0 0 chr9 15705670 15705738 -108370434 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 704 1660 170 173 0 chr9 15705738 15705996 -108370176 - Lx5 LINE L1 -97 5783 5472 2 704 1167 194 44 16 chr9 15705996 15706248 -108369924 - L1_Mur3 LINE L1 -965 4915 4657 2 704 5703 173 33 24 chr9 15706245 15707373 -108368799 - Lx5 LINE L1 -409 5471 4342 2 704 2139 163 5 3 chr9 15707373 15707743 -108368429 - Lx LINE L1 -1 6653 6283 2 704 5703 173 33 24 chr9 15707743 15707783 -108368389 - Lx5 LINE L1 -1539 4341 4293 2 704 227 95 48 0 chr9 15707930 15707972 -108368200 + (CATA)n Simple_repeat Simple_repeat 4 47 0 2 704 211 270 16 16 chr9 15707988 15708052 -108368120 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 704 342 247 0 37 chr9 15708056 15708220 -108367952 + (CATATA)n Simple_repeat Simple_repeat 3 160 0 2 704 620 231 154 26 chr9 15708970 15709165 -108367007 - B4 SINE B4 -68 224 5 2 704 308 325 17 34 chr9 15710052 15710170 -108366002 - MLT1A0 LTR MaLR -7 383 268 2 704 367 285 92 28 chr9 15710254 15710395 -108365777 - MLT1A0 LTR MaLR -214 151 2 2 704 23 33 0 0 chr9 15710859 15710889 -108365283 + AT_rich Low_complexity Low_complexity 1 30 0 2 704 377 285 24 24 chr9 15712284 15712410 -108363762 + MER68 LTR ERVL 427 552 -11 2 704 330 26 0 0 chr9 15714233 15714272 -108361900 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 704 234 235 0 0 chr9 15714754 15714835 -108361337 + T-rich Low_complexity Low_complexity 1 81 0 2 704 253 151 49 16 chr9 15716948 15717019 -108359153 + MIR SINE MIR 81 153 -123 2 704 22 0 0 0 chr9 15717105 15717127 -108359045 + AT_rich Low_complexity Low_complexity 1 22 0 2 704 273 146 0 0 chr9 15718377 15718425 -108357747 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 704 251 294 140 14 chr9 15722407 15722593 -108353579 - B4A SINE B4 -18 274 66 2 704 236 340 19 19 chr9 15723072 15723180 -108352992 + Charlie4z DNA MER1_type 43 150 -17 2 704 270 0 0 0 chr9 15723814 15723844 -108352328 + (T)n Simple_repeat Simple_repeat 1 30 0 2 704 456 19 0 0 chr9 15724314 15724367 -108351805 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 704 528 59 0 0 chr9 15724391 15724459 -108351713 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 704 686 218 42 0 chr9 15725110 15725252 -108350920 + B1_Mur1 SINE Alu 2 149 0 2 704 248 315 0 0 chr9 15727578 15727651 -108348521 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 704 333 68 0 0 chr9 15728053 15728097 -108348075 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 704 502 312 0 0 chr9 15728099 15728211 -108347961 - B3A SINE B2 -34 164 53 2 704 361 326 69 5 chr9 15728341 15728529 -108347643 - MamRep434 DNA TcMar -5 421 222 2 705 252 300 0 0 chr9 15728915 15728975 -108347197 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 705 716 322 67 30 chr9 15728992 15729261 -108346911 - B4A SINE B4 0 292 14 2 705 242 299 49 35 chr9 15730384 15730526 -108345646 - HAL1 LINE L1 -306 2201 2058 2 705 430 244 72 72 chr9 15731018 15731212 -108344960 - HAL1 LINE L1 -1106 1401 1208 2 705 506 299 125 92 chr9 15731479 15731817 -108344355 + MLT2C2 LTR ERVL 7 422 -42 2 705 185 119 24 0 chr9 15731859 15731901 -108344271 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2 705 198 297 132 0 chr9 15732246 15732337 -108343835 - MIRc SINE MIR -125 143 41 2 705 21 0 0 0 chr9 15732668 15732689 -108343483 + AT_rich Low_complexity Low_complexity 1 21 0 2 705 448 298 0 13 chr9 15733141 15733294 -108342878 + (CATATA)n Simple_repeat Simple_repeat 2 152 0 2 705 426 39 0 0 chr9 15733302 15733354 -108342818 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 705 3487 20 5 0 chr9 15733529 15733923 -108342249 + MTA_Mm LTR MaLR 1 396 0 2 705 9268 36 4 1 chr9 15733923 15735018 -108341154 + MTA_Mm-int LTR MaLR 1 1098 0 2 705 3487 20 5 0 chr9 15735018 15735412 -108340760 + MTA_Mm LTR MaLR 1 396 0 2 705 967 258 37 57 chr9 15736433 15736729 -108339443 + B4 SINE B4 3 292 0 2 705 236 250 17 0 chr9 15736754 15736814 -108339358 + CT-rich Low_complexity Low_complexity 2 62 0 2 705 428 0 19 0 chr9 15736908 15736960 -108339212 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 705 1051 251 5 0 chr9 15739804 15740019 -108336153 + B3 SINE B2 1 216 0 2 705 369 290 56 0 chr9 15740661 15740768 -108335404 + PB1D10 SINE Alu 5 117 0 2 705 240 35 0 0 chr9 15741115 15741144 -108335028 + (T)n Simple_repeat Simple_repeat 1 29 0 2 705 537 110 0 0 chr9 15741866 15741948 -108334224 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 705 656 299 15 19 chr9 15741985 15742190 -108333982 - B4 SINE B4 -49 243 40 3 705 326 176 0 42 chr9 15743524 15743595 -108332577 - Charlie12 DNA MER1_type -3 2870 2803 3 705 430 295 98 46 chr9 15743663 15743837 -108332335 + RMER30 DNA MER1_type 20 202 0 3 705 288 0 0 0 chr9 15744807 15744839 -108331333 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 705 1552 58 0 0 chr9 15745941 15746129 -108330043 + B2_Mm1a SINE B2 3 190 -3 3 705 333 298 36 95 chr9 15746436 15746573 -108329599 - MTEa LTR MaLR -250 129 1 3 705 261 245 119 30 chr9 15749127 15749228 -108326944 + PB1D10 SINE Alu 1 110 -7 3 705 286 278 86 9 chr9 15749865 15749981 -108326191 + ID_B1 SINE B4 99 223 -1 3 705 270 0 0 0 chr9 15750050 15750080 -108326092 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3 705 204 239 41 52 chr9 15750257 15750301 -108325871 + (TCTCTG)n Simple_repeat Simple_repeat 1 42 0 3 705 231 7 0 150 chr9 15750301 15750461 -108325711 + (CTGTG)n Simple_repeat Simple_repeat 5 140 0 3 705 204 239 41 52 chr9 15750461 15750513 -108325659 + (TCTCTG)n Simple_repeat Simple_repeat 1 54 0 3 705 477 0 0 0 chr9 15752610 15752663 -108323509 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 705 266 38 0 0 chr9 15754411 15754459 -108321713 + L1_Mus2 LINE L1 6525 6564 -2 3 705 228 111 0 0 chr9 15756675 15756711 -108319461 + (TCC)n Simple_repeat Simple_repeat 2 37 0 3 705 233 241 80 44 chr9 15757962 15758075 -108318097 + L3 LINE CR1 4101 4217 -272 3 705 200 329 37 0 chr9 15758168 15758250 -108317922 + L3 LINE CR1 4379 4463 -26 3 705 187 379 30 22 chr9 15758314 15758449 -108317723 + MIRb SINE MIR 63 198 -70 3 705 369 0 0 0 chr9 15760145 15760186 -108315986 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 705 306 0 0 0 chr9 15760186 15760219 -108315953 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 705 309 345 69 46 chr9 15761037 15761190 -108314982 + B4A SINE B4 24 189 -103 3 705 1083 96 0 0 chr9 15761190 15761389 -108314783 + (TA)n Simple_repeat Simple_repeat 1 199 0 3 705 309 345 69 46 chr9 15761389 15761494 -108314678 + B4A SINE B4 190 290 -2 3 705 962 314 20 7 chr9 15763761 15764056 -108312116 + MTEb LTR MaLR 1 299 -80 3 705 242 319 114 51 chr9 15765672 15765847 -108310325 + MIR SINE MIR 3 188 -74 3 705 520 259 15 0 chr9 15768366 15768497 -108307675 + B1F1 SINE Alu 10 142 -7 3 705 430 308 40 11 chr9 15770659 15770833 -108305339 - MER20 DNA MER1_type -12 207 29 3 705 621 292 82 58 chr9 15771859 15772153 -108304019 + MTEa LTR MaLR 2 302 -77 3 705 343 315 118 40 chr9 15775148 15775528 -108300644 - L2 LINE L2 -730 2689 2280 3 705 640 251 39 79 chr9 15775851 15776054 -108300118 - B3A SINE B2 -2 196 2 3 705 778 270 119 31 chr9 15777850 15777931 -108298241 + B4 SINE B4 2 82 -210 3 705 342 0 0 0 chr9 15777931 15777969 -108298203 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 705 348 83 0 0 chr9 15777970 15778018 -108298154 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 3 705 778 270 119 31 chr9 15778018 15778180 -108297992 + B4 SINE B4 83 271 -21 3 705 396 103 0 0 chr9 15778180 15778238 -108297934 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 705 778 270 119 31 chr9 15778238 15778251 -108297921 + B4 SINE B4 272 283 -9 3 705 590 276 81 32 chr9 15778645 15778866 -108297306 - Lx8 LINE L1 -102 7371 7140 3 705 276 30 0 0 chr9 15778866 15778899 -108297273 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 3 705 703 197 0 0 chr9 15778901 15779023 -108297149 - B1_Mus2 SINE Alu -5 142 21 3 705 558 275 0 48 chr9 15779038 15779206 -108296966 - Lx8 LINE L1 -326 7147 6988 3 705 260 273 116 48 chr9 15779244 15779390 -108296782 - L1ME1 LINE L1 -14 6150 5995 3 705 338 283 42 42 chr9 15780212 15780229 -108295943 + CYRA11_Mm Unknown Y-chromosome 157 173 -444 3 705 777 152 15 0 chr9 15780229 15780361 -108295811 - URR1B DNA MER1_type 0 225 92 3 705 924 245 5 5 chr9 15780522 15780719 -108295453 + B3A SINE B2 1 197 -1 3 705 948 43 0 0 chr9 15782557 15782674 -108293498 + (GGGGA)n Simple_repeat Simple_repeat 3 119 0 3 705 309 51 0 0 chr9 15783677 15783716 -108292456 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 705 822 60 26 0 chr9 15783720 15783836 -108292336 - B1_Mus2 SINE Alu 0 147 29 3 705 690 294 78 26 chr9 15784030 15784222 -108291950 - B4 SINE B4 -8 284 83 3 705 1920 186 43 69 chr9 15784935 15785327 -108290845 + ORR1C2 LTR MaLR 3 384 0 3 705 359 214 67 58 chr9 15785336 15785440 -108290732 + Charlie4a DNA MER1_type 73 177 -331 3 705 267 303 22 11 chr9 15785519 15785609 -108290563 + Charlie4a DNA MER1_type 402 492 -16 3 705 187 281 46 58 chr9 15785669 15785756 -108290416 + MER5A DNA MER1_type 44 129 -60 3 705 285 274 131 15 chr9 15785997 15786134 -108290038 + MIR SINE MIR 76 228 -34 3 705 188 396 10 10 chr9 15786367 15786469 -108289703 - MIRc SINE MIR -77 191 90 3 705 721 294 96 33 chr9 15789569 15789903 -108286269 - MLT1A0 LTR MaLR 0 365 11 3 705 272 284 51 8 chr9 15790008 15790125 -108286047 + L1MD2 LINE L1 5840 5961 -398 3 705 2294 119 28 3 chr9 15790594 15790948 -108285224 + ORR1B1 LTR MaLR 30 392 -2 3 705 499 85 24 0 chr9 15792340 15792422 -108283750 + (GAAAA)n Simple_repeat Simple_repeat 2 85 0 3 705 192 97 0 0 chr9 15792530 15792561 -108283611 + (GGA)n Simple_repeat Simple_repeat 3 33 0 3 705 1001 279 71 89 chr9 15793397 15793779 -108282393 + MTE2b LTR MaLR 1 375 -4 3 705 357 298 73 16 chr9 15797903 15798026 -108278146 + MER57E1 LTR ERV1 223 352 -20 3 705 393 266 43 0 chr9 15798028 15798122 -108278050 + B1F1 SINE Alu 2 99 -50 3 705 276 30 0 0 chr9 15798250 15798283 -108277889 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 705 424 286 27 125 chr9 15798397 15798621 -108277551 + MER20 DNA MER1_type 18 219 0 3 705 309 82 0 0 chr9 15804772 15804821 -108271351 + (TATG)n Simple_repeat Simple_repeat 4 52 0 3 705 1164 98 0 0 chr9 15804821 15804993 -108271179 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 3 705 342 0 0 0 chr9 15806505 15806543 -108269629 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 705 211 295 33 0 chr9 15808558 15808619 -108267553 + MIRb SINE MIR 172 234 -34 3 705 234 236 27 107 chr9 15808640 15808901 -108267271 - RMER17D LTR ERVK -420 469 230 3 705 245 298 56 101 chr9 15809061 15809240 -108266932 - L2c LINE L2 0 3387 3217 3 705 713 269 54 38 chr9 15811639 15811952 -108264220 + MTEb LTR MaLR 7 371 -8 3 705 704 275 100 116 chr9 15812135 15813053 -108263119 - L1MC5 LINE L1 -99 7862 6959 3 705 1188 225 196 18 chr9 15813105 15813431 -108262741 - MTD LTR MaLR -13 406 23 3 705 1219 248 98 14 chr9 15813457 15813813 -108262359 - Lx8 LINE L1 -141 7332 6947 3 705 213 39 0 0 chr9 15814053 15814079 -108262093 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 3 705 212 233 14 143 chr9 15814084 15814154 -108262018 - ID2 SINE ID -10 73 13 3 705 25 0 0 0 chr9 15814252 15814277 -108261895 + AT_rich Low_complexity Low_complexity 1 25 0 3 705 1302 20 0 0 chr9 15815282 15815431 -108260741 + L1_Mm LINE L1 5088 5236 -647 3 705 324 260 13 0 chr9 15815602 15815679 -108260493 + MER20 DNA MER1_type 55 132 -87 3 705 720 320 20 30 chr9 15815850 15816146 -108260026 - L1MC5 LINE L1 -2242 5640 5348 3 705 788 189 56 24 chr9 15816497 15816704 -108259468 + RMER17B LTR ERVK 183 399 -559 3 705 1162 85 11 6 chr9 15816704 15816881 -108259291 + (TTCTC)n Simple_repeat Simple_repeat 1 178 0 3 705 788 214 49 20 chr9 15816881 15816945 -108259227 + RMER17B LTR ERVK 400 439 -519 3 705 625 245 83 89 chr9 15816914 15817170 -108259002 + RMER17C LTR ERVK 77 345 -65 3 705 5455 46 2 3 chr9 15817170 15817797 -108258375 - L1Md_F2 LINE L1 -4 6578 5953 3 705 625 245 83 89 chr9 15817797 15817876 -108258296 + RMER17C LTR ERVK 346 410 0 3 705 285 319 43 0 chr9 15820584 15820678 -108255494 + MIRc SINE MIR 86 183 -85 3 705 216 318 67 22 chr9 15821066 15821156 -108255016 + MIR SINE MIR 63 156 -106 3 705 270 300 106 28 chr9 15821256 15821400 -108254772 - MLT1D LTR MaLR -136 544 333 3 705 278 314 29 29 chr9 15821487 15821592 -108254580 - MLT1D LTR MaLR -379 126 22 3 705 375 339 42 17 chr9 15823420 15823540 -108252632 + PB1 SINE Alu 1 123 -4 3 705 1197 75 7 7 chr9 15823981 15824129 -108252043 + B1_Mus1 SINE Alu 1 148 0 3 705 200 31 0 59 chr9 15824129 15824163 -108252009 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 3 705 299 325 17 0 chr9 15824366 15824483 -108251689 - MER94 DNA AcHobo -12 122 4 3 705 230 337 0 75 chr9 15824820 15824926 -108251246 + MER117 DNA MER1_type 69 166 -31 3 705 195 280 18 115 chr9 15825160 15825273 -108250899 + MER5B DNA MER1_type 73 174 -4 3 705 335 352 62 19 chr9 15829901 15830063 -108246109 - RMER30 DNA MER1_type -32 170 2 3 705 180 111 0 0 chr9 15834152 15834179 -108241993 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 3 705 306 268 25 4 chr9 15834865 15835115 -108241057 + (TATATG)n Simple_repeat Simple_repeat 1 255 0 3 705 207 395 0 0 chr9 15835119 15835228 -108240944 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 705 231 345 18 26 chr9 15836208 15836321 -108239851 - MLT1A0 LTR MaLR -253 112 1 3 705 406 296 113 54 chr9 15836523 15836797 -108239375 + MLT1A LTR MaLR 1 293 -81 3 705 363 327 111 18 chr9 15836834 15837005 -108239167 + MLT1A0 LTR MaLR 53 239 -126 3 705 587 310 53 15 chr9 15837035 15837241 -108238931 - MLT1A0 LTR MaLR -28 337 124 3 705 2819 153 22 18 chr9 15837931 15838429 -108237743 + RLTR28 LTR ERVL 25 524 0 3 705 341 318 82 97 chr9 15838860 15839129 -108237043 + MTEb LTR MaLR 6 264 -115 3 705 228 67 0 0 chr9 15839129 15839159 -108237013 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 705 341 293 60 75 chr9 15839159 15839274 -108236898 + MTEb LTR MaLR 265 379 0 3 705 1206 258 67 92 chr9 15840251 15840640 -108235532 + MTE2a LTR MaLR 1 379 0 3 705 215 260 0 0 chr9 15840640 15840690 -108235482 + L2a LINE L2 3376 3425 -1 3 705 333 0 0 0 chr9 15840796 15840833 -108235339 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 705 329 327 26 16 chr9 15840844 15841000 -108235172 - MIR SINE MIR -108 168 6 4 705 436 316 200 33 chr9 15842722 15842967 -108233205 - B4 SINE B4 -5 287 2 4 705 195 212 25 12 chr9 15843396 15843477 -108232695 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 705 273 146 0 0 chr9 15843470 15843518 -108232654 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 705 234 261 0 55 chr9 15844275 15844348 -108231824 + GA-rich Low_complexity Low_complexity 3 71 0 4 705 531 0 0 0 chr9 15845634 15845693 -108230479 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 705 210 319 85 17 chr9 15846644 15846762 -108229410 - MER91A DNA Tip100 -62 134 9 4 705 1162 137 26 0 chr9 15846816 15847006 -108229166 - B2_Mm2 SINE B2 0 195 1 4 705 211 389 66 33 chr9 15847027 15847208 -108228964 + L2 LINE L2 2692 2878 -541 4 705 270 327 18 18 chr9 15848919 15849028 -108227144 + MLT1A1 LTR MaLR 21 129 -279 4 705 693 284 35 12 chr9 15852442 15852613 -108223559 - B3A SINE B2 -15 183 9 4 705 787 173 222 0 chr9 15852617 15852802 -108223370 + URR1A DNA MER1_type 1 226 0 4 705 450 0 0 0 chr9 15852896 15852946 -108223226 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 705 21 0 0 0 chr9 15854899 15854920 -108221252 + AT_rich Low_complexity Low_complexity 1 21 0 4 705 263 322 33 54 chr9 15856169 15856353 -108219819 + L2 LINE L2 2298 2477 -942 4 705 6148 30 0 0 chr9 15857243 15858007 -108218165 - L1Md_F2 LINE L1 -510 5373 4610 4 705 1795 10 0 0 chr9 15858005 15858214 -108217958 + L1Md_F2 LINE L1 5378 5586 -297 4 705 7981 50 2 3 chr9 15858214 15859209 -108216963 + L1Md_F2 LINE L1 5587 6580 -2 4 705 193 225 0 0 chr9 15859646 15859686 -108216486 - L2a LINE L2 -2 3424 3385 4 706 1849 240 157 36 chr9 15861702 15862389 -108213783 - Lx6 LINE L1 0 7460 6691 4 706 6076 103 43 8 chr9 15862803 15863747 -108212425 + Lx LINE L1 5671 6647 -7 4 706 4438 144 3 8 chr9 15863888 15864643 -108211529 - L1_Mm LINE L1 -213 5670 4920 4 706 1260 56 0 0 chr9 15864687 15864974 -108211198 + (TG)n Simple_repeat Simple_repeat 1 287 0 4 706 245 246 115 0 chr9 15864999 15865060 -108211112 - B1_Mur4 SINE Alu -80 70 3 4 706 216 0 0 0 chr9 15865486 15865510 -108210662 + (CAT)n Simple_repeat Simple_repeat 1 24 0 4 706 1093 57 0 7 chr9 15865530 15865672 -108210500 - B1_Mus1 SINE Alu -1 147 7 4 706 21 0 0 0 chr9 15867055 15867076 -108209096 + AT_rich Low_complexity Low_complexity 1 21 0 4 706 432 0 0 0 chr9 15867124 15867172 -108209000 + (T)n Simple_repeat Simple_repeat 1 48 0 4 706 362 329 65 13 chr9 15870425 15870445 -108205727 + B4 SINE B4 69 165 -127 4 706 651 236 0 0 chr9 15870445 15870568 -108205604 + B1_Mus2 SINE Alu 4 126 -21 4 706 362 329 65 13 chr9 15870568 15870579 -108205593 + B4 SINE B4 166 230 -62 4 706 229 26 0 50 chr9 15870600 15870640 -108205532 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 4 706 314 289 79 29 chr9 15871455 15871594 -108204578 - L2a LINE L2 -1 3425 3280 4 706 332 292 71 0 chr9 15871774 15871887 -108204285 + LTR52 LTR ERVL 172 292 -129 4 706 1186 62 0 0 chr9 15872393 15872538 -108203634 - B1_Mm SINE Alu -1 146 2 4 706 203 314 84 42 chr9 15873114 15873257 -108202915 - MIRb SINE MIR -112 156 8 4 706 4252 83 7 15 chr9 15874142 15874740 -108201432 + L1_Mus3 LINE L1 6046 6638 0 4 706 630 296 127 58 chr9 15874929 15875259 -108200913 + MTEa LTR MaLR 1 353 -26 4 706 2046 165 29 20 chr9 15875536 15875945 -108200227 + Lx5 LINE L1 4569 4981 -896 4 706 367 113 9 51 chr9 15875945 15876038 -108200134 - B1_Mur4 SINE Alu -61 88 3 4 706 1662 226 23 17 chr9 15876039 15876390 -108199782 - ORR1B1 LTR MaLR -41 353 1 4 706 3414 254 60 54 chr9 15876390 15878415 -108197757 + Lx5 LINE L1 5016 7035 -15 4 706 218 395 0 0 chr9 15878596 15878677 -108197495 + ID2 SINE ID 1 81 -2 4 706 2376 116 11 0 chr9 15880651 15881022 -108195150 + Lx5 LINE L1 5604 5978 -1072 4 706 697 286 73 16 chr9 15881467 15881659 -108194513 - B3 SINE B2 0 216 14 4 706 385 288 179 33 chr9 15882034 15882164 -108194008 - B3A SINE B2 -23 175 23 4 706 2426 126 22 89 chr9 15882164 15882625 -108193547 + RLTR23 LTR ERV1 1 430 0 4 706 385 288 179 33 chr9 15882625 15882645 -108193527 - B3A SINE B2 -176 22 3 4 706 180 125 0 0 chr9 15882995 15883027 -108193145 + (TATG)n Simple_repeat Simple_repeat 1 32 0 4 706 260 255 0 19 chr9 15883069 15883177 -108192995 + (TATATG)n Simple_repeat Simple_repeat 5 110 0 4 706 384 251 17 6 chr9 15883226 15883402 -108192770 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 4 706 284 229 24 24 chr9 15883410 15883495 -108192677 + (TATG)n Simple_repeat Simple_repeat 4 88 0 4 706 348 24 0 0 chr9 15885213 15885254 -108190918 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 706 231 362 58 8 chr9 15885386 15885549 -108190623 - MIRc SINE MIR -72 196 23 4 706 233 317 104 16 chr9 15885730 15885855 -108190317 - MIRc SINE MIR -62 206 71 4 706 362 259 59 2 chr9 15886383 15886484 -108189688 - B1F2 SINE Alu -3 117 13 4 706 244 148 33 0 chr9 15887070 15887131 -108189041 + GA-rich Low_complexity Low_complexity 2 64 0 4 706 308 282 0 41 chr9 15888691 15888813 -108187359 + (TATG)n Simple_repeat Simple_repeat 4 120 0 4 706 234 0 0 0 chr9 15888822 15888848 -108187324 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 706 375 253 96 11 chr9 15890867 15891055 -108185117 - L1MA7 LINE L1 0 6291 6088 4 706 205 344 20 51 chr9 15891418 15891516 -108184656 + MER5A DNA MER1_type 33 127 -62 4 706 297 0 0 0 chr9 15892573 15892606 -108183566 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 4 706 189 74 0 0 chr9 15892691 15892718 -108183454 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 4 706 567 107 0 0 chr9 15893542 15893626 -108182546 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 706 407 299 80 49 chr9 15894132 15894294 -108181878 + MTEb LTR MaLR 212 378 -1 4 706 3202 306 136 25 chr9 15894295 15895715 -108180457 + MTEb-int LTR MaLR 1 1578 -2 4 706 1077 250 39 52 chr9 15895717 15896025 -108180147 + MTEb LTR MaLR 1 304 -75 4 706 747 214 156 0 chr9 15896265 15896438 -108179734 + B3 SINE B2 4 203 -13 4 706 230 364 57 62 chr9 15898448 15898624 -108177548 - MER5B DNA MER1_type -3 175 1 4 706 364 342 11 80 chr9 15899512 15899687 -108176485 + RSINE1 SINE B4 2 164 -1 4 706 389 291 22 15 chr9 15899757 15899893 -108176279 - L1MA5A LINE L1 -458 5839 5703 4 706 261 57 0 0 chr9 15901973 15902008 -108174164 + (TGG)n Simple_repeat Simple_repeat 1 35 0 4 706 658 324 16 83 chr9 15902008 15902321 -108173851 - B4 SINE B4 0 292 1 4 706 294 29 0 0 chr9 15902333 15902368 -108173804 + (TATG)n Simple_repeat Simple_repeat 1 35 0 4 706 647 279 166 33 chr9 15903978 15904348 -108171824 - MTE2a LTR MaLR 0 379 6 4 706 21 0 0 0 chr9 15906461 15906482 -108169690 + AT_rich Low_complexity Low_complexity 1 21 0 4 706 220 364 34 11 chr9 15906535 15906657 -108169515 + MIR SINE MIR 21 146 -122 4 706 198 0 0 0 chr9 15907026 15907048 -108169124 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 4 706 550 298 75 102 chr9 15907598 15907757 -108168415 + L1MA4 LINE L1 5441 5577 -723 4 706 1248 54 7 0 chr9 15907757 15907904 -108168268 + B1_Mus1 SINE Alu 1 148 0 4 706 554 298 75 102 chr9 15907904 15908252 -108167920 + L1MA4 LINE L1 5578 5934 -366 4 706 216 135 0 0 chr9 15908275 15908312 -108167860 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 706 1625 32 0 0 chr9 15908425 15908613 -108167559 + L1Md_A LINE L1 6393 6580 -2 4 706 1645 196 55 41 chr9 15908819 15909181 -108166991 + ORR1D1 LTR MaLR 8 374 0 4 706 277 228 0 0 chr9 15910766 15910823 -108165349 - Lx8 LINE L1 -2 7471 7415 4 706 342 107 0 0 chr9 15911366 15911422 -108164750 + (CACCC)n Simple_repeat Simple_repeat 2 57 0 4 706 200 323 92 20 chr9 15911735 15911833 -108164339 - MIRm SINE MIR -20 256 152 4 706 187 213 21 21 chr9 15912222 15912270 -108163902 - L2 LINE L2 -557 2862 2815 4 706 633 324 20 12 chr9 15913214 15913438 -108162734 - B4 SINE B4 -20 272 2 4 706 302 405 26 8 chr9 15914441 15914603 -108161569 - MIRb SINE MIR -81 181 23 4 706 1112 232 158 19 chr9 15914830 15915146 -108161026 + MTE2b LTR MaLR 1 360 -19 4 706 1706 49 0 5 chr9 15917125 15917330 -108158842 + L1Md_A LINE L1 6379 6582 0 4 706 243 0 0 0 chr9 15920746 15920773 -108155399 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 706 1137 36 0 0 chr9 15920773 15920910 -108155262 + (GA)n Simple_repeat Simple_repeat 1 138 0 4 706 26 30 0 0 chr9 15921295 15921328 -108154844 + AT_rich Low_complexity Low_complexity 1 33 0 4 706 411 21 0 0 chr9 15921342 15921390 -108154782 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 706 343 229 14 0 chr9 15921444 15921514 -108154658 - ID SINE ID -153 71 1 4 706 203 257 14 0 chr9 15923488 15923562 -108152610 + (ATG)n Simple_repeat Simple_repeat 3 77 0 4 706 209 200 0 44 chr9 15923816 15923884 -108152288 + (TTTG)n Simple_repeat Simple_repeat 3 67 0 4 706 562 284 63 39 chr9 15924208 15924542 -108151630 + Charlie5 DNA MER1_type 2233 2574 -50 4 706 183 156 0 0 chr9 15925458 15925490 -108150682 + CT-rich Low_complexity Low_complexity 1 32 0 4 706 228 111 0 0 chr9 15927275 15927311 -108148861 + (GGGGA)n Simple_repeat Simple_repeat 4 39 0 4 706 1268 79 0 6 chr9 15927315 15927494 -108148678 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 4 706 26 0 0 0 chr9 15928709 15928735 -108147437 + AT_rich Low_complexity Low_complexity 1 26 0 4 706 310 304 0 0 chr9 15928870 15928939 -108147233 + BC1_Mm scRNA scRNA 4 72 -80 4 706 180 125 0 0 chr9 15928940 15928972 -108147200 + (ATG)n Simple_repeat Simple_repeat 2 33 0 4 706 512 101 0 11 chr9 15929721 15929811 -108146361 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 706 333 0 0 0 chr9 15929811 15929848 -108146324 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 706 2805 179 53 15 chr9 15932764 15933308 -108142864 + RMER15 LTR ERVL 3 567 -8 4 706 1298 275 53 6 chr9 15933516 15933856 -108142316 + MTE2b LTR MaLR 1 356 -23 5 706 1057 266 79 35 chr9 15933972 15934335 -108141837 + MTE2b LTR MaLR 6 372 -2 5 706 399 265 128 32 chr9 15935459 15935615 -108140557 + B4A SINE B4 122 292 0 5 706 1143 179 52 0 chr9 15936231 15936443 -108139729 - URR1A DNA MER1_type -2 224 2 5 706 270 0 0 0 chr9 15936635 15936665 -108139507 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 5 706 228 246 63 102 chr9 15938617 15938744 -108137428 + RMER15 LTR ERVL 1 122 -453 5 706 747 292 154 0 chr9 15938802 15939055 -108137117 + B4 SINE B4 1 292 0 5 706 189 0 0 0 chr9 15939055 15939076 -108137096 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 706 279 0 0 0 chr9 15939076 15939107 -108137065 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 706 351 136 0 70 chr9 15939113 15939184 -108136988 + HAL1-3A_ME LINE L1 1976 2041 -817 5 706 264 237 155 0 chr9 15940024 15940121 -108136051 + MLT1D LTR MaLR 36 147 -358 5 706 243 125 0 0 chr9 15941649 15941689 -108134483 + (A)n Simple_repeat Simple_repeat 1 40 0 5 706 340 293 8 101 chr9 15942635 15942764 -108133408 + B2_Mm2 SINE B2 10 126 -69 5 706 186 224 65 65 chr9 15943320 15943382 -108132790 - L3 LINE CR1 -353 4136 4075 5 706 259 281 26 0 chr9 15944221 15944335 -108131837 - Lx9 LINE L1 -136 7508 7392 5 706 438 286 15 22 chr9 15944664 15944800 -108131372 - Lx8 LINE L1 -509 6964 6830 5 706 395 292 28 0 chr9 15944857 15944963 -108131209 + Lx8 LINE L1 7219 7327 -146 5 706 248 0 31 0 chr9 15945116 15945148 -108131024 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 706 417 20 0 0 chr9 15945418 15945468 -108130704 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 706 243 0 0 0 chr9 15946043 15946070 -108130102 + (T)n Simple_repeat Simple_repeat 1 27 0 5 706 441 360 20 7 chr9 15948148 15948299 -108127873 + B4A SINE B4 100 252 -40 5 706 1315 255 64 11 chr9 15948402 15948759 -108127413 + MTEb LTR MaLR 1 376 -3 5 706 414 0 0 0 chr9 15949940 15949986 -108126186 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 706 276 315 134 0 chr9 15950581 15950708 -108125464 - L2a LINE L2 -1 3425 3282 5 706 324 103 0 0 chr9 15952102 15952160 -108124012 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 706 393 22 0 0 chr9 15952160 15952206 -108123966 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 706 4692 71 16 13 chr9 15955256 15955883 -108120289 - L1_Mus2 LINE L1 0 6566 5938 5 706 358 375 45 61 chr9 15956279 15956526 -108119646 + MLT1B LTR MaLR 106 348 -42 5 706 300 304 97 97 chr9 15956636 15956811 -108119361 + B3A SINE B2 22 196 -2 5 706 304 273 57 0 chr9 15957138 15957152 -108119020 - PB1D10 SINE Alu 0 117 25 5 706 339 284 0 0 chr9 15957152 15957226 -108118946 - ID_B1 SINE B4 -45 179 106 5 706 393 354 113 39 chr9 15959725 15960034 -108116138 + MLT1A LTR MaLR 16 347 -27 5 706 304 364 74 50 chr9 15960382 15960665 -108115507 + L1MD LINE L1 2572 2861 -3285 5 706 306 322 76 22 chr9 15960705 15960889 -108115283 + L1MD LINE L1 2971 3164 -2982 5 706 299 231 35 53 chr9 15961046 15961160 -108115012 + L1MB8 LINE L1 3453 3564 -2582 5 706 38 22 0 0 chr9 15961194 15961239 -108114933 + AT_rich Low_complexity Low_complexity 1 45 0 5 706 430 326 144 31 chr9 15961243 15961631 -108114541 + L1MB8 LINE L1 3587 4024 -2119 5 706 243 150 0 0 chr9 15961653 15961713 -108114459 + (A)n Simple_repeat Simple_repeat 1 60 0 5 706 249 265 167 20 chr9 15961713 15961880 -108114292 + L1MB8 LINE L1 4046 4247 -1899 5 706 432 0 0 0 chr9 15961880 15961928 -108114244 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 706 249 265 167 20 chr9 15961928 15962060 -108114112 + L1MB8 LINE L1 4248 4389 -1757 5 706 254 349 0 0 chr9 15962224 15962290 -108113882 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 5 706 403 302 60 45 chr9 15962310 15962511 -108113661 + L1MB8 LINE L1 4559 4762 -1384 5 706 393 372 53 24 chr9 15962606 15962815 -108113357 - ID_B1 SINE B4 -8 216 2 5 706 741 301 73 36 chr9 15962845 15963790 -108112382 + L1MB8 LINE L1 4864 5841 -337 5 706 761 278 24 9 chr9 15963871 15964082 -108112090 + B3 SINE B2 1 214 -2 5 706 1053 54 0 120 chr9 15964083 15964250 -108111922 + B1_Mus2 SINE Alu 1 147 0 5 706 205 229 10 30 chr9 15964252 15964266 -108111906 + A-rich Low_complexity Low_complexity 1 14 0 5 706 195 42 0 0 chr9 15964266 15964290 -108111882 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 706 205 229 10 30 chr9 15964290 15964374 -108111798 + A-rich Low_complexity Low_complexity 15 96 0 5 706 237 135 54 0 chr9 15965526 15965600 -108110572 + (CAAA)n Simple_repeat Simple_repeat 3 80 0 5 706 909 249 103 11 chr9 15966970 15967242 -108108930 + RMER1B Other Other 2 298 -768 5 706 1437 185 12 67 chr9 15967265 15967595 -108108577 + RMER1B Other Other 750 1061 -5 5 706 189 0 0 0 chr9 15968360 15968381 -108107791 + (A)n Simple_repeat Simple_repeat 1 21 0 5 706 351 0 0 0 chr9 15968804 15968843 -108107329 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 706 251 196 0 0 chr9 15968886 15968937 -108107235 + CT-rich Low_complexity Low_complexity 1 51 0 5 706 212 154 0 0 chr9 15969030 15969069 -108107103 + CT-rich Low_complexity Low_complexity 1 39 0 5 706 217 276 13 0 chr9 15969179 15969255 -108106917 + (CA)n Simple_repeat Simple_repeat 1 77 0 5 706 1895 69 4 0 chr9 15969490 15969736 -108106436 - L1_Mus1 LINE L1 0 6567 6321 5 706 261 234 86 51 chr9 15970021 15970138 -108106034 - RMER12 LTR ERVK -467 855 735 5 706 243 0 0 0 chr9 15970379 15970406 -108105766 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 706 766 140 0 43 chr9 15973216 15973403 -108102769 + (GAATG)n Simple_repeat Simple_repeat 1 179 0 5 706 472 30 15 15 chr9 15973451 15973518 -108102654 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 5 706 2799 171 34 24 chr9 15976027 15976561 -108099611 + Lx LINE L1 6102 6640 -14 5 706 449 265 163 21 chr9 15977176 15977415 -108098757 - Lx8 LINE L1 0 7473 7201 5 706 562 247 93 21 chr9 15977466 15977702 -108098470 - Lx8 LINE L1 -840 6633 6381 5 706 272 27 27 0 chr9 15977716 15977753 -108098419 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 5 706 581 260 0 16 chr9 15977753 15977861 -108098311 - ID_B1 SINE B4 -6 218 112 5 706 653 242 48 65 chr9 15977861 15978091 -108098081 + URR1A DNA MER1_type 1 226 0 5 706 581 260 0 16 chr9 15978091 15978111 -108098061 - ID_B1 SINE B4 -113 111 92 5 706 277 380 17 58 chr9 15978127 15978300 -108097872 + MIR SINE MIR 16 181 -81 5 706 195 288 0 0 chr9 15978750 15978861 -108097311 + (CA)n Simple_repeat Simple_repeat 2 112 0 5 706 402 331 91 47 chr9 15979083 15979359 -108096813 + Tigger15a DNA TcMar 106 393 -322 5 706 267 262 16 0 chr9 15979521 15979582 -108096590 + tRNA-Ala-GCY_ tRNA tRNA 8 69 -6 5 706 219 374 126 36 chr9 15981156 15981267 -108094905 + PB1 SINE Alu 7 127 0 5 706 298 283 175 92 chr9 15982115 15982321 -108093851 + RMER15 LTR ERVL 310 532 -43 5 706 209 98 77 19 chr9 15984843 15984895 -108091277 + T-rich Low_complexity Low_complexity 6 60 0 5 706 831 172 28 0 chr9 15984895 15985040 -108091132 - B1_Mur4 SINE Alu 0 150 2 5 706 347 302 168 51 chr9 15985102 15985727 -108090445 + L1MB2 LINE L1 5474 6171 0 5 706 286 355 43 43 chr9 15987012 15987153 -108089019 + ORR1E LTR MaLR 9 149 -210 5 706 880 287 67 93 chr9 15987302 15987732 -108088440 - MTD LTR MaLR 0 419 1 5 706 1760 181 3 30 chr9 15987969 15988304 -108087868 - ORR1A3 LTR MaLR 0 326 1 5 706 491 0 17 0 chr9 15988619 15988678 -108087494 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 706 669 22 0 0 chr9 15989114 15989205 -108086967 - L1_Mus3 LINE L1 -2 6636 6546 5 706 186 139 111 0 chr9 15989411 15989447 -108086725 + L4 LINE RTE 623 662 -1367 5 706 314 244 12 0 chr9 15990488 15990570 -108085602 + GA-rich Low_complexity Low_complexity 2 84 0 5 707 198 0 0 0 chr9 15990946 15990968 -108085204 + (A)n Simple_repeat Simple_repeat 1 22 0 5 707 387 0 0 0 chr9 15992364 15992407 -108083765 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 707 1139 287 9 48 chr9 15992597 15993051 -108083121 - Lx9 LINE L1 -280 7364 6929 5 707 1650 184 108 8 chr9 15993072 15993423 -108082749 + MTC LTR MaLR 3 388 -33 5 707 314 267 71 36 chr9 15993828 15993968 -108082204 + ID_B1 SINE B4 78 222 -2 5 707 470 163 23 11 chr9 15994839 15994926 -108081246 - B1_Mur2 SINE Alu 0 149 62 5 707 883 247 76 58 chr9 15994917 15995272 -108080900 + MTE2a LTR MaLR 39 419 0 5 707 389 267 119 70 chr9 15995274 15995475 -108080697 + RMER5 LTR ERV1 313 523 -11 5 707 543 270 36 0 chr9 15997618 15997755 -108078417 - B1F SINE Alu -7 142 1 5 707 239 347 121 49 chr9 15999405 15999711 -108076461 - L3b LINE CR1 -102 380 53 5 707 220 250 148 71 chr9 16000098 16000253 -108075919 - MIRc SINE MIR -75 193 27 1 707 677 303 6 27 chr9 16000514 16000697 -108075475 + B3A SINE B2 1 179 -19 2 707 576 42 0 0 chr9 16001056 16001127 -108075045 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 707 1308 155 55 72 chr9 16001365 16001399 -108074773 - Lx2 LINE L1 0 6997 6965 4 707 6024 68 0 1 chr9 16001399 16002119 -108074053 + L1_Mus1 LINE L1 5849 6567 0 5 707 1308 160 56 72 chr9 16002119 16002398 -108073774 - Lx2 LINE L1 -33 6964 6711 4 707 287 296 99 141 chr9 16005137 16005499 -108070673 - MLT1B LTR MaLR -2 388 42 6 707 180 194 0 0 chr9 16009235 16009271 -108066901 - MIR SINE MIR -64 144 109 7 707 270 378 25 49 chr9 16009631 16009834 -108066338 - L2b LINE L2 -177 3198 3001 8 707 201 74 0 0 chr9 16009935 16009962 -108066210 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 707 444 268 65 0 chr9 16010537 16010675 -108065497 - B1F SINE Alu -1 148 2 1 707 1023 270 79 71 chr9 16011143 16011522 -108064650 + MLT2B2 LTR ERVL 2 383 -132 1 707 1213 221 150 150 chr9 16011581 16012034 -108064138 + MT2A LTR ERVL 5 551 -50 1 707 537 16 0 0 chr9 16012034 16012096 -108064076 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 707 234 0 0 0 chr9 16012100 16012126 -108064046 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 707 1020 251 96 67 chr9 16012126 16012169 -108064003 + MT2A LTR ERVL 552 594 -7 1 707 405 0 0 0 chr9 16012737 16012782 -108063390 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 707 496 348 0 24 chr9 16012787 16012955 -108063217 - RSINE1 SINE B4 0 165 2 1 707 206 121 0 0 chr9 16012990 16013023 -108063149 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1 707 1140 108 0 0 chr9 16013023 16013171 -108063001 - B1_Mus1 SINE Alu 0 148 1 1 707 447 188 0 0 chr9 16013437 16013549 -108062623 + (CA)n Simple_repeat Simple_repeat 1 112 0 1 707 261 243 27 68 chr9 16014223 16014369 -108061803 + L1M4 LINE L1 5063 5202 -944 2 707 393 251 130 45 chr9 16014704 16015011 -108061161 + L1M4 LINE L1 5222 5569 -609 2 707 1590 76 33 9 chr9 16015011 16015223 -108060949 + L1Md_F2 LINE L1 6354 6570 -12 2 707 362 303 127 48 chr9 16015223 16015425 -108060747 + L1M4 LINE L1 5570 5774 -400 2 707 188 86 0 28 chr9 16016899 16016935 -108059237 + (CATG)n Simple_repeat Simple_repeat 3 37 0 2 707 3338 35 56 0 chr9 16018298 16018673 -108057499 + MTA_Mm LTR MaLR 1 396 0 2 707 1266 48 7 0 chr9 16018747 16018893 -108057279 + B1_Mus1 SINE Alu 2 148 0 2 707 222 62 0 0 chr9 16019119 16019151 -108057021 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 2 707 182 229 0 0 chr9 16019574 16019609 -108056563 - L2c LINE L2 -17 3370 3336 2 707 216 0 0 0 chr9 16019664 16019688 -108056484 + (T)n Simple_repeat Simple_repeat 1 24 0 2 707 24 77 0 0 chr9 16021375 16021427 -108054745 + AT_rich Low_complexity Low_complexity 1 52 0 2 707 234 0 0 0 chr9 16021519 16021545 -108054627 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 707 462 18 0 0 chr9 16022083 16022138 -108054034 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 707 354 45 0 0 chr9 16022138 16022182 -108053990 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 707 483 63 0 0 chr9 16022617 16022680 -108053492 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 707 251 321 18 9 chr9 16023032 16023145 -108053027 + (CA)n Simple_repeat Simple_repeat 1 114 0 3 707 1163 47 13 0 chr9 16023445 16023594 -108052578 + L1Md_A LINE L1 6432 6582 0 3 707 248 313 0 15 chr9 16023610 16023678 -108052494 + ID4_ SINE ID 4 70 -13 3 707 226 212 14 96 chr9 16024185 16024258 -108051914 + MIRb SINE MIR 51 117 -151 3 707 264 341 15 8 chr9 16024301 16024431 -108051741 + (CA)n Simple_repeat Simple_repeat 2 132 0 3 707 34 0 0 0 chr9 16025421 16025455 -108050717 + AT_rich Low_complexity Low_complexity 1 34 0 3 707 847 267 164 12 chr9 16025455 16025705 -108050467 + B4A SINE B4 3 290 -2 3 707 204 163 0 0 chr9 16025729 16025772 -108050400 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 707 753 51 0 0 chr9 16025772 16025870 -108050302 + (GA)n Simple_repeat Simple_repeat 2 99 0 4 707 216 0 0 0 chr9 16026307 16026331 -108049841 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 707 922 220 66 38 chr9 16027244 16027561 -108048611 + Lx9 LINE L1 7318 7643 -1 4 707 252 245 0 0 chr9 16027972 16028025 -108048147 + CT-rich Low_complexity Low_complexity 2 54 0 4 707 583 355 101 11 chr9 16028047 16028315 -108047857 - B4A SINE B4 0 292 1 4 707 288 331 11 118 chr9 16029475 16029653 -108046519 + MER115 DNA Tip100 72 230 -463 4 707 279 0 0 0 chr9 16031286 16031317 -108044855 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 707 429 251 88 68 chr9 16031931 16032123 -108044049 - MTEa LTR MaLR 0 379 184 4 707 25 0 0 0 chr9 16032336 16032361 -108043811 + AT_rich Low_complexity Low_complexity 1 25 0 4 707 426 20 0 0 chr9 16032372 16032423 -108043749 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 707 185 328 16 0 chr9 16032749 16032813 -108043359 + L2a LINE L2 3357 3421 -5 5 707 850 185 0 46 chr9 16033617 16033770 -108042402 + B1_Mur3 SINE Alu 2 147 -2 5 707 990 255 10 0 chr9 16034131 16034335 -108041837 + B3 SINE B2 1 206 -10 5 707 567 241 52 8 chr9 16034994 16035128 -108041044 - B1F2 SINE Alu -1 148 9 5 707 711 294 15 30 chr9 16035133 16035336 -108040836 - ID_B1 SINE B4 -17 207 8 5 707 218 146 42 0 chr9 16035397 16035445 -108040727 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 5 707 193 306 126 0 chr9 16037698 16037809 -108038363 - MIR SINE MIR -59 203 79 5 707 1812 169 137 8 chr9 16037977 16038336 -108037836 + MTC LTR MaLR 16 420 -1 5 707 215 333 47 39 chr9 16039390 16039518 -108036654 - MIR3 SINE MIR -54 154 26 5 707 701 207 55 39 chr9 16039813 16039994 -108036178 - MIR SINE MIR -2 260 77 6 707 846 273 40 97 chr9 16039998 16040400 -108035772 + MTE2a LTR MaLR 1 379 0 6 707 246 62 0 0 chr9 16040773 16040805 -108035367 + (T)n Simple_repeat Simple_repeat 1 32 0 6 707 271 145 48 0 chr9 16042573 16042635 -108033537 - Lx9 LINE L1 -9 7635 7571 6 707 5973 129 15 9 chr9 16043469 16044416 -108031756 + RMER17B LTR ERVK 7 958 0 6 707 531 231 32 36 chr9 16044757 16044914 -108031258 + Lx7 LINE L1 7563 7696 0 6 707 22 56 0 0 chr9 16044920 16044956 -108031216 + AT_rich Low_complexity Low_complexity 1 36 0 6 707 218 298 0 0 chr9 16045254 16045311 -108030861 + MER5A DNA MER1_type 34 90 -99 6 707 475 43 29 0 chr9 16045593 16045663 -108030509 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 707 387 41 0 0 chr9 16047350 16047399 -108028773 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 6 707 868 278 18 80 chr9 16047573 16047859 -108028313 + B4 SINE B4 5 272 -20 7 707 857 289 37 107 chr9 16048230 16048655 -108027517 - MTE2a LTR MaLR 0 419 1 7 707 229 222 19 0 chr9 16048660 16048714 -108027458 - MIRc SINE MIR -136 132 78 7 707 216 0 0 0 chr9 16049350 16049374 -108026798 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 707 530 296 7 22 chr9 16049404 16049539 -108026633 - B4 SINE B4 -2 290 158 7 707 23 33 0 0 chr9 16052886 16052916 -108023256 + AT_rich Low_complexity Low_complexity 1 30 0 7 707 201 74 0 0 chr9 16053054 16053081 -108023091 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 7 707 5708 165 53 12 chr9 16053448 16053536 -108022636 - Lx LINE L1 0 6654 6567 7 707 297 0 0 0 chr9 16053536 16053569 -108022603 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 707 5708 159 28 6 chr9 16053569 16054844 -108021328 - Lx LINE L1 -88 6566 5247 7 707 711 24 0 0 chr9 16054889 16054974 -108021198 + (TG)n Simple_repeat Simple_repeat 2 86 0 7 707 635 238 8 8 chr9 16055011 16055142 -108021030 - B3A SINE B2 -65 133 3 8 707 896 92 8 15 chr9 16056113 16056245 -108019927 - B1_Mus2 SINE Alu 0 147 17 8 707 387 0 0 0 chr9 16057102 16057145 -108019027 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 707 216 0 0 0 chr9 16057145 16057168 -108019004 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 707 459 0 0 0 chr9 16057361 16057412 -108018760 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 707 531 157 0 0 chr9 16057412 16057520 -108018652 + GA-rich Low_complexity Low_complexity 1 108 0 8 707 373 252 8 30 chr9 16057835 16057966 -108018206 + (TG)n Simple_repeat Simple_repeat 1 128 0 8 707 519 316 61 108 chr9 16057966 16058179 -108017993 - B4 SINE B4 0 292 90 8 707 330 107 0 0 chr9 16060482 16060538 -108015634 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 707 337 140 17 17 chr9 16060541 16060599 -108015573 - B4 SINE B4 -229 63 6 8 707 7819 145 12 57 chr9 16063266 16065494 -108010678 + Lx LINE L1 4518 6646 -8 9 707 180 394 71 0 chr9 16066648 16066747 -108009425 + MIRb SINE MIR 50 155 -113 9 707 1692 201 64 50 chr9 16066939 16067375 -108008797 + RMER10A LTR ERVL 1 442 0 9 707 308 64 0 21 chr9 16068318 16068366 -108007806 + (TTG)n Simple_repeat Simple_repeat 2 48 0 9 707 1159 73 0 0 chr9 16068371 16068507 -108007665 - B1_Mus1 SINE Alu -12 136 1 9 707 683 24 12 0 chr9 16068634 16068719 -108007453 + (TC)n Simple_repeat Simple_repeat 1 86 0 9 707 646 302 86 94 chr9 16068743 16069233 -108006939 - L1MA5A LINE L1 -366 5931 5446 9 707 330 270 85 36 chr9 16070078 16070249 -108005923 + MIRc SINE MIR 18 187 -81 9 707 374 316 59 7 chr9 16071043 16071196 -108004976 - RMER15 LTR ERVL -68 507 347 9 707 210 224 24 52 chr9 16072109 16072193 -108003979 - MIRc SINE MIR -142 126 47 9 707 389 180 0 11 chr9 16073520 16073610 -108002562 + CT-rich Low_complexity Low_complexity 4 92 0 1 707 192 355 13 0 chr9 16075935 16076011 -108000161 - MIR SINE MIR -132 130 54 1 707 633 307 83 108 chr9 16076012 16076337 -107999835 - MLT1E2 LTR MaLR -36 591 273 1 707 674 357 7 64 chr9 16076353 16076634 -107999538 + B4A SINE B4 26 290 -2 1 707 307 229 113 9 chr9 16077026 16077132 -107999040 + MIRc SINE MIR 31 147 -121 1 707 1240 34 7 20 chr9 16077725 16077875 -107998297 - B1_Mus1 SINE Alu 0 148 1 1 707 180 288 0 0 chr9 16077968 16078041 -107998131 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 1 707 696 273 167 9 chr9 16078201 16078416 -107997756 - B4A SINE B4 -43 249 1 1 707 941 186 30 0 chr9 16079216 16079418 -107996754 - URR1B DNA MER1_type 0 225 1 1 707 423 0 0 0 chr9 16080102 16080149 -107996023 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 707 666 277 7 0 chr9 16080735 16080883 -107995289 + B1F SINE Alu 1 149 0 1 707 216 336 97 35 chr9 16081458 16081603 -107994569 + MIRb SINE MIR 94 247 -21 1 707 23 78 0 0 chr9 16081661 16081712 -107994460 + AT_rich Low_complexity Low_complexity 1 51 0 1 707 1243 264 73 38 chr9 16082087 16082539 -107993633 - Lx6 LINE L1 -11 7449 6982 1 707 252 333 92 25 chr9 16083245 16083365 -107992807 - LTR53 LTR ERVL -86 433 306 1 707 251 352 48 0 chr9 16083393 16083498 -107992674 - LTR53 LTR ERVL -266 253 144 1 707 207 286 56 14 chr9 16083640 16083711 -107992461 + MIR3 SINE MIR 81 154 -54 1 707 537 16 0 0 chr9 16083985 16084047 -107992125 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 707 238 53 47 109 chr9 16084458 16084522 -107991650 + A-rich Low_complexity Low_complexity 3 62 0 1 707 330 336 6 101 chr9 16084582 16084741 -107991431 + B1_Mm SINE Alu 1 144 -3 1 707 207 0 0 0 chr9 16085325 16085348 -107990824 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 707 1172 72 0 0 chr9 16085624 16085762 -107990410 + B1_Mus1 SINE Alu 2 139 -9 1 707 201 39 0 0 chr9 16085763 16085789 -107990383 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 707 692 280 104 54 chr9 16087623 16087921 -107988251 - ORR1E LTR MaLR -43 316 4 1 707 480 154 0 0 chr9 16088420 16088524 -107987648 + CT-rich Low_complexity Low_complexity 1 104 0 1 707 327 25 0 0 chr9 16088524 16088564 -107987608 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 707 486 0 0 0 chr9 16088624 16088678 -107987494 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1 707 2370 57 0 0 chr9 16088691 16088971 -107987201 - L1_Mus1 LINE L1 -1 6566 6287 1 707 196 26 24 95 chr9 16089500 16089542 -107986630 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 707 183 28 83 0 chr9 16089597 16089633 -107986539 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1 707 8366 93 17 11 chr9 16089892 16091818 -107984354 + L1_Mus3 LINE L1 4693 6638 0 1 707 214 106 43 0 chr9 16091840 16091887 -107984285 + (CAA)n Simple_repeat Simple_repeat 2 50 0 1 707 221 200 0 32 chr9 16092725 16092787 -107983385 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 1 707 393 86 0 0 chr9 16092840 16092898 -107983274 + (CAAT)n Simple_repeat Simple_repeat 2 59 0 1 707 626 143 8 0 chr9 16093049 16093168 -107983004 + CT-rich Low_complexity Low_complexity 1 120 0 1 707 456 270 50 50 chr9 16093168 16093328 -107982844 - RSINE1 SINE B4 -4 161 2 1 707 187 333 14 113 chr9 16093887 16094029 -107982143 - L2c LINE L2 0 3387 3260 1 707 35 0 0 0 chr9 16094200 16094235 -107981937 + AT_rich Low_complexity Low_complexity 1 35 0 1 707 549 252 102 142 chr9 16096023 16096277 -107979895 + B4 SINE B4 35 278 -14 1 707 321 172 0 0 chr9 16096320 16096384 -107979788 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 707 242 289 24 0 chr9 16098979 16099062 -107977110 + L3 LINE CR1 4143 4227 -262 1 707 196 354 35 26 chr9 16099614 16099730 -107976442 - MER5A DNA MER1_type -37 152 36 1 707 22 0 0 0 chr9 16100811 16100833 -107975339 + AT_rich Low_complexity Low_complexity 1 22 0 1 707 22 0 0 0 chr9 16100900 16100922 -107975250 + AT_rich Low_complexity Low_complexity 1 22 0 1 707 837 251 31 10 chr9 16100926 16101119 -107975053 - B3 SINE B2 -15 201 5 1 707 244 302 107 43 chr9 16101722 16101909 -107974263 + MER96B DNA hAT 2 200 -217 1 707 417 123 0 0 chr9 16102389 16102454 -107973718 + (A)n Simple_repeat Simple_repeat 1 65 0 1 707 608 302 89 40 chr9 16104607 16104855 -107971317 + B4 SINE B4 33 292 0 1 707 22 0 0 0 chr9 16104903 16104925 -107971247 + AT_rich Low_complexity Low_complexity 1 22 0 1 707 267 275 88 0 chr9 16105752 16105832 -107970340 + B1F2 SINE Alu 19 105 -44 1 707 613 55 55 0 chr9 16106151 16106261 -107969911 + (TCTA)n Simple_repeat Simple_repeat 4 119 0 1 707 271 267 37 19 chr9 16107481 16107588 -107968584 + CT-rich Low_complexity Low_complexity 3 111 0 1 707 477 0 0 0 chr9 16108400 16108453 -107967719 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 707 363 346 137 0 chr9 16108835 16108988 -107967184 + B4 SINE B4 104 277 -15 1 707 249 108 0 0 chr9 16108989 16109026 -107967146 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1 707 1076 250 32 50 chr9 16111451 16111729 -107964443 + MTE2b LTR MaLR 89 361 -18 1 707 1112 143 19 9 chr9 16113030 16113231 -107962941 - B2_Mm2 SINE B2 -10 206 1 1 707 298 376 0 18 chr9 16113400 16113511 -107962661 - B1F SINE Alu -40 109 1 1 707 918 261 91 4 chr9 16114590 16114608 -107961564 - B4A SINE B4 -1 291 274 1 707 423 0 0 0 chr9 16114608 16114655 -107961517 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 707 918 261 91 4 chr9 16114655 16114878 -107961294 - B4A SINE B4 -19 273 30 1 707 255 229 27 41 chr9 16117328 16117401 -107958771 - PB1D10 SINE Alu -1 116 45 1 707 366 121 0 0 chr9 16117760 16117826 -107958346 + (TTTA)n Simple_repeat Simple_repeat 2 67 0 1 707 438 278 68 25 chr9 16117859 16117977 -107958195 + ID_B1 SINE B4 90 212 -12 1 707 1850 188 88 6 chr9 16118632 16118975 -107957197 - MTC LTR MaLR -8 413 43 1 707 3006 75 7 61 chr9 16119002 16119430 -107956742 + L1_Mus2 LINE L1 6162 6566 0 1 707 244 236 13 40 chr9 16119850 16119925 -107956247 - RLTR15 LTR ERVK -238 121 49 1 707 872 71 0 0 chr9 16119925 16120038 -107956134 - MusHAL1 LINE L1 -904 1808 1696 1 707 5250 71 7 10 chr9 16120073 16120786 -107955386 - MusHAL1 LINE L1 -887 1825 1115 1 707 413 60 0 0 chr9 16120800 16120850 -107955322 - MusHAL1 LINE L1 -1668 1044 995 1 707 458 244 207 11 chr9 16120893 16121067 -107955105 + MLT2C2 LTR ERVL 41 248 -216 1 707 309 180 0 0 chr9 16121520 16121570 -107954602 - HAL1-3A_ME LINE L1 -834 2024 1975 1 707 690 75 0 0 chr9 16121573 16121666 -107954506 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 708 23 0 0 0 chr9 16122942 16122965 -107953207 + AT_rich Low_complexity Low_complexity 1 23 0 1 708 354 107 0 0 chr9 16123078 16123134 -107953038 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 708 231 216 8 17 chr9 16125665 16125783 -107950389 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 708 555 16 0 0 chr9 16125784 16125848 -107950324 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 708 216 0 0 0 chr9 16126343 16126367 -107949805 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1 708 673 288 46 8 chr9 16126652 16126867 -107949305 + MTE2a LTR MaLR 8 222 -157 1 708 562 271 57 7 chr9 16127192 16127333 -107948839 - B1_Mur2 SINE Alu -1 148 1 1 708 551 15 15 0 chr9 16128339 16128407 -107947765 - B1_Mm SINE Alu -1 146 78 1 708 254 226 252 61 chr9 16128412 16128511 -107947661 - B4 SINE B4 -69 223 106 1 708 22 0 0 0 chr9 16128778 16128800 -107947372 + AT_rich Low_complexity Low_complexity 1 22 0 1 708 1583 236 164 75 chr9 16128827 16129513 -107946659 + RMER1A Other Other 3 901 -129 1 708 564 15 0 0 chr9 16129513 16129578 -107946594 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 708 1583 229 176 73 chr9 16129578 16129700 -107946472 + RMER1A Other Other 902 1026 -4 1 708 1525 238 78 3 chr9 16129700 16130070 -107946102 - MTD LTR MaLR 0 419 22 1 708 257 0 30 0 chr9 16130990 16131023 -107945149 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 708 420 99 0 0 chr9 16132640 16132711 -107943461 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 708 897 221 84 15 chr9 16132715 16132880 -107943292 - B3 SINE B2 0 216 38 1 708 204 40 0 0 chr9 16132880 16132905 -107943267 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 708 897 221 84 15 chr9 16132905 16132941 -107943231 - B3 SINE B2 -179 37 1 1 708 418 304 46 20 chr9 16132946 16133097 -107943075 + L1MC1 LINE L1 6155 6309 -24 1 708 240 389 64 36 chr9 16133402 16133682 -107942490 + L3b LINE CR1 15 302 -180 1 708 275 104 21 0 chr9 16133973 16134021 -107942151 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 708 941 17 9 0 chr9 16134032 16134147 -107942025 + (GA)n Simple_repeat Simple_repeat 1 116 0 1 708 362 328 58 68 chr9 16134219 16134409 -107941763 + B4A SINE B4 99 286 -6 1 708 400 285 94 102 chr9 16136203 16136267 -107939905 + MTEa LTR MaLR 4 77 -302 1 708 351 0 0 0 chr9 16136267 16136306 -107939866 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 708 400 285 94 102 chr9 16136306 16136495 -107939677 + MTEa LTR MaLR 78 255 -124 1 708 274 315 45 38 chr9 16136615 16136747 -107939425 + MLT1A LTR MaLR 3 135 -239 1 708 432 0 0 0 chr9 16137206 16137254 -107938918 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 708 1540 0 0 9 chr9 16138698 16138910 -107937262 + (TTC)n Simple_repeat Simple_repeat 1 210 0 1 708 1269 54 0 20 chr9 16138912 16139063 -107937109 - B1_Mus1 SINE Alu 0 148 1 1 708 197 83 28 0 chr9 16139652 16139688 -107936484 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 708 1808 162 94 6 chr9 16140348 16140689 -107935483 - Lx4A LINE L1 -1 7057 6687 1 708 644 209 247 34 chr9 16140846 16141024 -107935148 - B3 SINE B2 0 216 1 2 708 3452 300 45 35 chr9 16141238 16142454 -107933718 + Lx8 LINE L1 6244 7471 -2 2 708 1611 33 22 0 chr9 16142454 16142635 -107933537 - B2_Mm1t SINE B2 -8 185 1 2 708 237 273 13 13 chr9 16142878 16142956 -107933216 - L1MCa LINE L1 -4845 1815 1738 2 708 507 310 91 53 chr9 16143122 16143557 -107932615 - L1MCa LINE L1 -5301 1450 915 2 708 556 102 10 10 chr9 16143568 16143667 -107932505 + (TG)n Simple_repeat Simple_repeat 1 99 0 2 708 354 312 55 63 chr9 16147028 16147450 -107928722 + MLT1C LTR MaLR 1 430 -37 2 708 276 291 12 0 chr9 16149988 16150074 -107926098 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 708 203 176 0 0 chr9 16150211 16150245 -107925927 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 708 278 324 72 46 chr9 16151973 16152125 -107924047 - RSINE1 SINE B4 -6 159 4 2 708 260 271 0 0 chr9 16152680 16152739 -107923433 - LTR81A LTR ERV1? -1127 223 165 2 708 325 19 111 0 chr9 16152739 16152793 -107923379 + (TTTTC)n Simple_repeat Simple_repeat 5 64 0 2 708 983 152 6 0 chr9 16152803 16152981 -107923191 + CT-rich Low_complexity Low_complexity 1 179 0 2 708 368 330 0 35 chr9 16154357 16154473 -107921699 + MLT1A LTR MaLR 27 138 -227 2 708 438 308 58 21 chr9 16154837 16155026 -107921146 + MLT1A LTR MaLR 167 362 -12 2 708 792 115 0 0 chr9 16157189 16157311 -107918861 + (TC)n Simple_repeat Simple_repeat 1 122 0 2 708 250 360 0 20 chr9 16158360 16158462 -107917710 + CT-rich Low_complexity Low_complexity 5 104 0 2 708 325 402 18 0 chr9 16158477 16158589 -107917583 + RSINE1 SINE B4 31 144 -21 2 708 489 121 0 0 chr9 16158593 16158676 -107917496 + (CAGA)n Simple_repeat Simple_repeat 4 86 0 2 708 863 229 93 31 chr9 16159200 16159394 -107916778 - B3 SINE B2 -7 209 4 2 708 498 342 78 16 chr9 16159399 16159592 -107916580 - B4A SINE B4 -69 223 19 2 708 329 0 0 24 chr9 16159907 16159949 -107916223 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 2 708 290 343 8 172 chr9 16160669 16160791 -107915381 + ID_B1 SINE B4 12 217 -4 2 708 417 324 29 0 chr9 16160791 16160916 -107915256 + B1F2 SINE Alu 7 142 -7 2 708 187 103 0 49 chr9 16160923 16160964 -107915208 + A-rich Low_complexity Low_complexity 1 39 0 2 708 466 236 63 24 chr9 16161184 16161310 -107914862 - ID_B1 SINE B4 -7 217 87 2 708 598 284 24 9 chr9 16161345 16161558 -107914614 + L1MB7 LINE L1 5955 6170 -14 2 708 536 0 16 0 chr9 16162665 16162729 -107913443 + (CTTG)n Simple_repeat Simple_repeat 3 67 0 2 708 271 289 22 0 chr9 16163941 16164031 -107912141 + GA-rich Low_complexity Low_complexity 3 94 0 2 708 483 18 0 0 chr9 16164765 16164821 -107911351 + (CAT)n Simple_repeat Simple_repeat 2 57 0 2 708 1069 175 5 33 chr9 16165009 16165222 -107910950 + L1Md_F2 LINE L1 6376 6582 0 2 708 36 0 0 0 chr9 16165222 16165258 -107910914 + AT_rich Low_complexity Low_complexity 1 36 0 2 708 211 103 66 49 chr9 16165277 16165338 -107910834 + A-rich Low_complexity Low_complexity 4 65 0 2 708 262 330 48 0 chr9 16165481 16165584 -107910588 + MIRb SINE MIR 102 209 -59 2 708 326 337 147 74 chr9 16167068 16167462 -107908710 + LTR16D LTR ERVL 222 644 -7 2 708 518 333 151 17 chr9 16170678 16170977 -107905195 - MLT1A0 LTR MaLR -19 346 8 2 708 326 253 140 61 chr9 16173358 16173522 -107902650 + MLT1B LTR MaLR 210 386 -4 2 708 241 350 7 21 chr9 16173706 16173846 -107902326 + (CATATA)n Simple_repeat Simple_repeat 6 143 0 2 708 4405 181 51 99 chr9 16173987 16174414 -107901758 + Lx7 LINE L1 4625 5006 -874 2 708 1070 118 6 0 chr9 16174414 16174584 -107901588 + (GAAA)n Simple_repeat Simple_repeat 4 174 0 2 708 4405 181 51 99 chr9 16174584 16174621 -107901551 + Lx7 LINE L1 5007 5011 -869 2 708 1233 96 0 0 chr9 16174621 16174799 -107901373 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 2 708 6502 216 40 43 chr9 16174799 16176989 -107899183 + Lx7 LINE L1 5012 7243 -453 2 708 3251 134 22 20 chr9 16177006 16177560 -107898612 - Lx LINE L1 -20 6634 6080 2 708 451 258 8 0 chr9 16177557 16177677 -107898495 + Lx7 LINE L1 7247 7367 -329 2 708 655 141 52 90 chr9 16177715 16177926 -107898246 + Lx7 LINE L1 7356 7558 -138 2 708 1071 119 31 56 chr9 16177934 16177966 -107898206 - B2_Mm2 SINE B2 -2 193 162 2 708 2075 115 43 9 chr9 16177966 16178292 -107897880 - Lx3_Mus LINE L1 -8 7001 6665 2 708 1071 119 31 56 chr9 16178292 16178455 -107897717 - B2_Mm2 SINE B2 -34 161 3 2 708 484 183 15 84 chr9 16178455 16178577 -107897595 + Lx7 LINE L1 7559 7673 -23 2 708 1271 27 0 0 chr9 16178577 16178723 -107897449 + B1_Mm SINE Alu 2 147 0 2 708 21 0 0 0 chr9 16182294 16182315 -107893857 + AT_rich Low_complexity Low_complexity 1 21 0 2 708 570 226 156 0 chr9 16183962 16184148 -107892024 - B3 SINE B2 -1 215 1 2 708 249 83 0 0 chr9 16184603 16184639 -107891533 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2 708 351 0 0 0 chr9 16185545 16185584 -107890588 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 708 238 295 76 13 chr9 16186605 16186684 -107889488 + MIR SINE MIR 47 130 -132 2 708 290 284 106 57 chr9 16187027 16187150 -107889022 + ID_B1 SINE B4 86 214 -10 2 708 260 284 24 36 chr9 16187078 16187162 -107889010 + PB1D7 SINE Alu 37 119 -1 2 708 432 55 0 0 chr9 16187719 16187774 -107888398 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 708 385 277 117 43 chr9 16188436 16188598 -107887574 - MER5A DNA MER1_type -15 174 1 2 708 244 368 28 7 chr9 16188835 16188980 -107887192 - Lx9 LINE L1 -878 6766 6619 2 708 22 35 0 0 chr9 16189010 16189039 -107887133 + AT_rich Low_complexity Low_complexity 1 29 0 2 708 733 218 0 7 chr9 16189119 16189262 -107886910 + B1_Mur4 SINE Alu 1 142 -8 2 708 225 0 0 0 chr9 16190026 16190051 -107886121 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 708 318 50 0 0 chr9 16192355 16192395 -107883777 + (CAT)n Simple_repeat Simple_repeat 2 41 0 2 708 371 352 35 14 chr9 16197199 16197343 -107878829 + B1F SINE Alu 1 147 -2 2 708 206 399 56 28 chr9 16198531 16198781 -107877391 - MIRb SINE MIR -11 257 1 2 708 264 200 0 0 chr9 16199764 16199824 -107876348 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 708 1667 191 86 33 chr9 16200174 16200302 -107875870 - RMER1C Other Other -2 1340 1219 2 708 1041 136 0 0 chr9 16200302 16200479 -107875693 + (GGA)n Simple_repeat Simple_repeat 2 178 0 2 708 1667 191 86 33 chr9 16200479 16200778 -107875394 - RMER1C Other Other -124 1218 890 2 708 4599 60 36 3 chr9 16200977 16201623 -107874549 - L1_Mus1 LINE L1 0 6567 5946 2 708 2915 84 10 0 chr9 16201623 16202015 -107874157 - MTB LTR MaLR -4 396 1 2 708 392 91 0 0 chr9 16202015 16202070 -107874102 - MTB-int LTR MaLR 0 1098 1044 2 708 547 65 39 0 chr9 16202055 16202132 -107874040 + MTB LTR MaLR 321 400 0 2 708 212 250 16 0 chr9 16202253 16202317 -107873855 + (TTG)n Simple_repeat Simple_repeat 3 67 0 2 708 198 0 0 0 chr9 16202317 16202339 -107873833 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 708 758 152 6 0 chr9 16202576 16202753 -107873419 + GA-rich Low_complexity Low_complexity 2 179 0 2 708 458 291 83 38 chr9 16202964 16203096 -107873076 - B1F SINE Alu -6 143 6 2 708 385 324 79 21 chr9 16204615 16204804 -107871368 + Tigger7 DNA MER2_type 2286 2485 -6 2 708 357 276 61 0 chr9 16205476 16205574 -107870598 + PB1D10 SINE Alu 13 116 -1 2 708 1895 98 8 4 chr9 16205598 16205864 -107870308 + L1Md_F2 LINE L1 6304 6570 -12 2 708 404 48 32 0 chr9 16206470 16206532 -107869640 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 2 708 480 143 0 0 chr9 16206573 16206657 -107869515 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 2 708 367 329 65 13 chr9 16208548 16208702 -107867470 + RSINE1 SINE B4 2 163 -2 2 708 328 346 55 12 chr9 16208925 16209089 -107867083 - MIRb SINE MIR -19 249 79 2 708 600 159 6 38 chr9 16209321 16209478 -107866694 + GA-rich Low_complexity Low_complexity 2 153 0 2 708 495 147 0 0 chr9 16210495 16210597 -107865575 + (GGGAGA)n Simple_repeat Simple_repeat 1 102 0 2 708 829 298 67 69 chr9 16210637 16211053 -107865119 - MTE2a LTR MaLR -14 405 1 2 708 209 196 0 18 chr9 16211101 16211158 -107865014 + CT-rich Low_complexity Low_complexity 2 57 0 2 708 186 321 9 60 chr9 16211237 16211353 -107864819 + L4 LINE RTE 1630 1739 -290 2 708 205 50 75 0 chr9 16213579 16213636 -107862536 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 2 708 431 151 11 0 chr9 16214499 16214592 -107861580 + (CCAA)n Simple_repeat Simple_repeat 1 94 0 2 708 216 0 0 0 chr9 16214593 16214617 -107861555 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2 708 180 242 145 0 chr9 16214751 16214813 -107861359 + L2 LINE L2 69 139 -3280 2 708 1012 246 31 25 chr9 16215747 16216064 -107860108 - Charlie21a DNA MER1_type -60 1153 835 2 708 342 333 0 62 chr9 16217010 16217138 -107859034 + B4A SINE B4 173 292 0 2 708 358 253 0 26 chr9 16217359 16217436 -107858736 - ID4 SINE ID 0 83 9 2 708 22 56 0 0 chr9 16217590 16217626 -107858546 + AT_rich Low_complexity Low_complexity 1 36 0 2 708 27 49 0 0 chr9 16217801 16217842 -107858330 + AT_rich Low_complexity Low_complexity 1 41 0 2 708 1393 61 0 88 chr9 16217900 16218117 -107858055 - L1_Mus2 LINE L1 -1 6565 6368 2 708 803 221 3 19 chr9 16218302 16218471 -107857701 - B3 SINE B2 -36 157 1 2 708 744 325 23 20 chr9 16218486 16218832 -107857340 - Tigger9b DNA MER2_type -36 588 242 2 708 29 47 0 0 chr9 16219613 16219656 -107856516 + AT_rich Low_complexity Low_complexity 1 43 0 2 708 405 0 0 0 chr9 16219680 16219725 -107856447 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 708 241 175 0 45 chr9 16221035 16221101 -107855071 + CT-rich Low_complexity Low_complexity 4 66 0 2 708 758 169 17 22 chr9 16221117 16221298 -107854874 + CT-rich Low_complexity Low_complexity 1 180 0 2 708 206 191 0 45 chr9 16222112 16222133 -107854039 + polypyrimidine Low_complexity Low_complexity 25 45 0 2 708 1289 73 6 0 chr9 16222133 16222311 -107853861 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2 708 206 191 0 45 chr9 16222311 16222333 -107853839 + polypyrimidine Low_complexity Low_complexity 4 24 0 2 708 378 143 0 0 chr9 16222566 16222643 -107853529 + (TC)n Simple_repeat Simple_repeat 2 78 0 3 708 207 0 0 0 chr9 16222643 16222666 -107853506 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 708 480 295 114 25 chr9 16223979 16224347 -107851825 - L1MC4a LINE L1 -10 7872 7472 3 708 388 315 50 36 chr9 16224400 16224677 -107851495 - L1MC4a LINE L1 -665 7377 7097 3 708 22 35 0 0 chr9 16224682 16224711 -107851461 + AT_rich Low_complexity Low_complexity 1 29 0 3 708 902 35 9 0 chr9 16224731 16224845 -107851327 + (CATATA)n Simple_repeat Simple_repeat 2 116 0 3 708 695 254 211 41 chr9 16226372 16226737 -107849435 + Lx8 LINE L1 7040 7466 -7 3 708 1334 215 154 20 chr9 16228901 16229261 -107846911 + MTD LTR MaLR 12 406 -13 3 708 369 58 0 0 chr9 16229551 16229603 -107846569 + (CAA)n Simple_repeat Simple_repeat 2 53 0 3 708 3713 20 2 0 chr9 16229986 16230381 -107845791 - MTA_Mm LTR MaLR 0 396 1 3 708 195 228 88 0 chr9 16230445 16230502 -107845670 - L2 LINE L2 -342 3077 3016 3 708 494 277 43 7 chr9 16230654 16230792 -107845380 + B1F SINE Alu 6 148 -1 3 708 900 203 86 30 chr9 16231316 16231514 -107844658 - B3 SINE B2 -6 210 2 3 708 450 304 9 9 chr9 16231830 16231943 -107844229 - ID_B1 SINE B4 -111 113 1 3 708 212 214 6 42 chr9 16234248 16234421 -107841751 + CT-rich Low_complexity Low_complexity 1 166 0 3 708 470 307 40 89 chr9 16236263 16236639 -107839533 + MLT1A LTR MaLR 4 374 0 3 708 634 268 63 32 chr9 16237100 16237289 -107838883 - B3A SINE B2 0 198 4 3 708 426 263 65 25 chr9 16237337 16237509 -107838663 + RMER1B Other Other 821 1031 -35 3 708 303 226 54 81 chr9 16237659 16237770 -107838402 + RMER1B Other Other 959 1066 0 3 708 186 336 64 18 chr9 16239774 16239883 -107836289 + MIRb SINE MIR 56 169 -99 3 708 1390 257 44 17 chr9 16240948 16241292 -107834880 - MTEa LTR MaLR -8 371 19 3 708 777 253 35 40 chr9 16241357 16241555 -107834617 - B3 SINE B2 0 216 20 3 708 1014 191 0 196 chr9 16241560 16241840 -107834332 + URR1A DNA MER1_type 2 226 0 3 708 199 364 111 0 chr9 16241882 16241981 -107834191 - L2 LINE L2 -711 2708 2599 3 708 263 259 0 0 chr9 16241991 16242049 -107834123 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 708 181 281 47 0 chr9 16242930 16242994 -107833178 + MIRc SINE MIR 77 143 -125 3 708 337 323 21 0 chr9 16243252 16243345 -107832827 - B4 SINE B4 -90 202 108 3 708 441 0 0 0 chr9 16244835 16244884 -107831288 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 708 488 30 15 0 chr9 16245970 16246036 -107830136 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 708 398 68 0 48 chr9 16248639 16248701 -107827471 + PB1D9 SINE Alu 1 59 -61 3 708 427 164 0 0 chr9 16248701 16248768 -107827404 + (CAGAGA)n Simple_repeat Simple_repeat 5 71 0 3 708 755 77 10 0 chr9 16248795 16248899 -107827273 + B1_Mm SINE Alu 42 146 -1 3 708 189 0 0 0 chr9 16248908 16248929 -107827243 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 3 708 267 269 0 0 chr9 16250886 16250938 -107825234 + ID4_ SINE ID 8 59 -24 3 708 607 196 248 8 chr9 16252244 16252486 -107823686 - Lx9 LINE L1 -1 7643 7344 3 708 336 235 45 34 chr9 16252469 16252557 -107823615 + Lx9 LINE L1 6913 7001 -643 3 708 742 225 21 14 chr9 16252569 16252713 -107823459 - B1_Mus1 SINE Alu -1 147 3 3 709 246 234 64 13 chr9 16254937 16255015 -107821157 - L1MC4a LINE L1 -1197 6685 6604 3 709 531 90 0 0 chr9 16255017 16255095 -107821077 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 709 187 347 122 39 chr9 16256511 16256667 -107819505 - L2a LINE L2 -205 3221 3053 3 709 36312 35 0 0 chr9 16257157 16262368 -107813804 + L1Md_T LINE L1 281 5589 -297 3 709 9601 5 0 0 chr9 16262368 16263364 -107812808 + L1Md_T LINE L1 5590 6585 0 3 709 459 0 0 0 chr9 16263436 16263487 -107812685 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 709 261 0 0 0 chr9 16263511 16263540 -107812632 + (A)n Simple_repeat Simple_repeat 1 29 0 3 709 716 259 82 34 chr9 16263984 16264192 -107811980 - ID_B1 SINE B4 -3 221 4 3 709 822 227 125 67 chr9 16264194 16264538 -107811634 - MTE2a LTR MaLR -15 364 1 3 709 345 62 0 0 chr9 16264565 16264613 -107811559 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 709 445 338 151 0 chr9 16264697 16264916 -107811256 - B4A SINE B4 -24 268 17 3 709 246 269 51 51 chr9 16266202 16266300 -107809872 + MIRb SINE MIR 56 153 -115 3 709 3073 50 11 0 chr9 16269670 16270028 -107806144 + L1_Mus1 LINE L1 6205 6566 -1 3 709 227 146 18 0 chr9 16270042 16270097 -107806075 + A-rich Low_complexity Low_complexity 5 60 0 3 709 216 122 0 0 chr9 16270757 16270798 -107805374 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 709 411 73 0 0 chr9 16270807 16270862 -107805310 + (CAGG)n Simple_repeat Simple_repeat 2 56 0 3 709 537 58 0 0 chr9 16270863 16270932 -107805240 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 3 709 490 255 85 0 chr9 16272180 16272286 -107803886 + RSINE1 SINE B4 4 118 -47 3 709 342 0 0 0 chr9 16272294 16272332 -107803840 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 709 423 0 0 0 chr9 16272332 16272378 -107803794 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 709 351 346 94 66 chr9 16273203 16273447 -107802725 + MIRb SINE MIR 13 263 -5 3 709 378 0 0 0 chr9 16273586 16273628 -107802544 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 709 964 114 0 28 chr9 16273645 16273826 -107802346 + (GGAGA)n Simple_repeat Simple_repeat 2 177 0 3 709 354 274 0 0 chr9 16273826 16273910 -107802262 - Lx9 LINE L1 -251 7393 7310 3 709 723 301 82 43 chr9 16273974 16274255 -107801917 + B4 SINE B4 1 292 0 3 709 198 0 0 0 chr9 16275731 16275753 -107800419 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 709 317 186 137 33 chr9 16275779 16275838 -107800334 + Lx9 LINE L1 7438 7515 -129 3 709 294 29 0 0 chr9 16275838 16275873 -107800299 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 709 183 42 0 0 chr9 16275883 16275907 -107800265 + (CCA)n Simple_repeat Simple_repeat 1 24 0 3 709 317 186 137 33 chr9 16275907 16276019 -107800153 + Lx9 LINE L1 7524 7639 -5 3 709 269 288 15 0 chr9 16280407 16280473 -107795699 - ID2 SINE ID -15 68 2 3 709 272 246 16 16 chr9 16280489 16280551 -107795621 - PB1D7 SINE Alu -57 63 2 3 709 243 276 12 62 chr9 16280491 16280572 -107795600 - B4A SINE B4 -146 146 70 3 709 697 274 155 39 chr9 16281392 16281891 -107794281 - L1MA5 LINE L1 -22 6278 5689 3 709 418 241 235 26 chr9 16281915 16282183 -107793989 - L1MA5 LINE L1 -633 5667 5344 3 709 228 209 318 19 chr9 16282189 16282296 -107793876 + Lx8 LINE L1 6916 7054 -419 3 709 293 250 0 32 chr9 16282296 16282358 -107793814 - B1F1 SINE Alu -85 64 5 3 709 319 261 17 17 chr9 16282701 16282880 -107793292 + CT-rich Low_complexity Low_complexity 1 179 0 3 709 227 267 26 39 chr9 16283725 16283803 -107792369 - MTD LTR MaLR -15 364 288 3 709 185 351 107 16 chr9 16284462 16284705 -107791467 + L2 LINE L2 1815 2079 -1340 3 709 353 319 63 7 chr9 16284872 16285014 -107791158 + MER58B DNA MER1_type 175 324 -17 3 709 270 381 70 19 chr9 16285064 16285222 -107790950 + MER5A DNA MER1_type 24 189 0 3 709 288 291 38 0 chr9 16285408 16285487 -107790685 - MTD LTR MaLR -325 94 13 3 709 268 262 46 35 chr9 16285496 16285583 -107790589 + B2_Mm2 SINE B2 102 189 -6 3 709 547 238 241 32 chr9 16286530 16286717 -107789455 + URR1A DNA MER1_type 1 226 0 3 709 419 346 83 9 chr9 16286882 16287098 -107789074 - B4A SINE B4 -48 244 13 3 709 353 284 0 0 chr9 16288128 16288202 -107787970 + ID4_ SINE ID 1 74 -9 3 709 1954 35 0 0 chr9 16288315 16288545 -107787627 - L1Md_F2 LINE L1 -411 6173 5944 3 709 3145 71 0 12 chr9 16288545 16288946 -107787226 + L1Md_F2 LINE L1 6185 6580 -2 3 709 246 62 0 0 chr9 16290144 16290176 -107785996 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 3 709 201 119 23 23 chr9 16290642 16290685 -107785487 + T-rich Low_complexity Low_complexity 5 47 0 3 709 2075 46 0 0 chr9 16291176 16291414 -107784758 + L1Md_A LINE L1 6345 6582 0 3 709 300 143 0 0 chr9 16291703 16291759 -107784413 + (GGGAGA)n Simple_repeat Simple_repeat 5 60 0 3 709 717 162 15 7 chr9 16292925 16293062 -107783110 - URR1A DNA MER1_type -22 204 67 3 709 197 319 55 0 chr9 16293563 16293654 -107782518 - L2a LINE L2 0 3426 3331 3 709 442 243 44 18 chr9 16296438 16296551 -107779621 - B1_Mur1 SINE Alu 0 149 34 3 709 24 0 0 0 chr9 16298034 16298058 -107778114 + AT_rich Low_complexity Low_complexity 1 24 0 3 709 248 221 29 14 chr9 16298250 16298319 -107777853 + GA-rich Low_complexity Low_complexity 2 71 0 3 709 254 86 41 41 chr9 16299099 16299172 -107777000 + A-rich Low_complexity Low_complexity 3 75 0 3 709 486 0 0 0 chr9 16300018 16300072 -107776100 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 709 327 49 0 0 chr9 16300072 16300112 -107776060 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 709 1769 199 28 28 chr9 16300122 16300479 -107775693 - MTB_Mm LTR MaLR -26 381 25 3 709 384 22 0 0 chr9 16300479 16300524 -107775648 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 709 387 0 0 0 chr9 16300591 16300634 -107775538 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 709 1099 296 53 14 chr9 16300887 16301270 -107774902 + MTE2a LTR MaLR 13 407 -14 3 709 313 266 25 107 chr9 16302537 16302659 -107773513 - ID_B1 SINE B4 -7 217 106 3 709 225 0 0 0 chr9 16303704 16303729 -107772443 + (A)n Simple_repeat Simple_repeat 1 25 0 3 709 21 36 0 0 chr9 16303883 16303911 -107772261 + AT_rich Low_complexity Low_complexity 1 28 0 3 709 202 237 0 48 chr9 16303974 16304036 -107772136 + CT-rich Low_complexity Low_complexity 4 62 0 3 709 621 0 0 0 chr9 16306982 16307051 -107769121 + (CTCTG)n Simple_repeat Simple_repeat 2 70 0 4 709 189 191 39 78 chr9 16307089 16307140 -107769032 - MIR SINE MIR -127 135 87 4 709 225 0 0 0 chr9 16307449 16307474 -107768698 + (CACCC)n Simple_repeat Simple_repeat 1 25 0 4 709 2233 191 154 89 chr9 16309408 16309656 -107766516 - RMER19C LTR ERVK -1 610 376 4 709 577 96 11 11 chr9 16309656 16309751 -107766421 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 4 709 2233 191 154 89 chr9 16309751 16310075 -107766097 - RMER19C LTR ERVK -236 375 1 4 709 388 299 160 30 chr9 16310077 16310246 -107765926 - B3A SINE B2 -6 192 2 4 709 663 13 0 0 chr9 16310497 16310573 -107765599 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 709 678 292 19 14 chr9 16311258 16311473 -107764699 - Lx8 LINE L1 -352 7121 6906 4 709 205 204 130 0 chr9 16311738 16311792 -107764380 - MIRm SINE MIR -4 272 212 4 709 1103 119 0 6 chr9 16312716 16312893 -107763279 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 4 709 386 276 55 39 chr9 16312954 16313082 -107763090 - B1_Mur1 SINE Alu -12 137 8 4 709 407 277 46 30 chr9 16313516 16313681 -107762491 - MTD LTR MaLR -270 149 2 4 709 238 239 9 9 chr9 16313794 16313908 -107762264 + (CA)n Simple_repeat Simple_repeat 2 115 0 4 709 228 231 52 39 chr9 16313908 16314061 -107762111 + (CATATA)n Simple_repeat Simple_repeat 1 155 0 4 709 213 213 41 51 chr9 16314073 16314324 -107761848 + (CATATA)n Simple_repeat Simple_repeat 1 248 0 4 709 294 73 0 0 chr9 16314324 16314365 -107761807 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 709 213 257 38 57 chr9 16314365 16314390 -107761782 + (CATATA)n Simple_repeat Simple_repeat 6 29 0 4 709 429 20 0 0 chr9 16315677 16315727 -107760445 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 709 699 307 40 83 chr9 16315765 16316067 -107760105 - B4A SINE B4 -3 289 1 4 709 611 260 116 30 chr9 16317280 16317478 -107758694 + B3 SINE B2 2 216 0 4 709 693 251 80 30 chr9 16317620 16317821 -107758351 - B3 SINE B2 -5 211 1 4 709 250 178 38 23 chr9 16318595 16318727 -107757445 + (TA)n Simple_repeat Simple_repeat 2 135 0 4 709 401 164 154 0 chr9 16318889 16318999 -107757173 + Lx9 LINE L1 7509 7635 -9 4 709 191 103 0 25 chr9 16321522 16321562 -107754610 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 709 260 310 84 45 chr9 16322992 16323171 -107753001 + MLT1C LTR MaLR 2 187 -280 4 709 385 327 33 88 chr9 16323354 16323535 -107752637 + B4 SINE B4 2 172 -120 4 709 389 319 44 0 chr9 16323537 16323650 -107752522 - B1F SINE Alu -9 140 23 4 709 369 0 0 0 chr9 16323735 16323776 -107752396 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 709 6315 76 14 1 chr9 16323778 16324566 -107751606 - L1_Mus3 LINE L1 -5 6633 5836 4 709 3476 118 4 0 chr9 16324568 16325069 -107751103 + L1_Mus3 LINE L1 5318 5820 -63 4 709 650 197 0 8 chr9 16325190 16325323 -107750849 + Lx4A LINE L1 6927 7058 0 4 709 21 0 0 0 chr9 16325774 16325795 -107750377 + AT_rich Low_complexity Low_complexity 1 21 0 4 709 790 194 74 21 chr9 16325915 16326105 -107750067 - RMER1A Other Other -4 1026 827 4 709 3003 30 30 0 chr9 16326105 16326441 -107749731 + ORR1A0 LTR MaLR 1 346 0 4 709 13262 53 14 18 chr9 16326441 16327232 -107748940 + ORR1A0-int LTR MaLR 1 801 -991 4 709 5646 49 7 5 chr9 16327232 16327904 -107748268 + L1Md_F2 LINE L1 5909 6582 0 4 709 13262 53 14 18 chr9 16327904 16328910 -107747262 + ORR1A0-int LTR MaLR 802 1792 0 4 709 867 58 31 35 chr9 16328910 16329086 -107747086 + ORR1A0 LTR MaLR 1 346 0 4 709 1098 206 35 18 chr9 16329086 16329313 -107746859 - RMER1B Other Other -173 893 663 4 709 1351 241 89 6 chr9 16329322 16329722 -107746450 + RMER1B Other Other 161 669 -397 4 709 32 26 0 0 chr9 16330270 16330309 -107745863 + AT_rich Low_complexity Low_complexity 1 39 0 4 709 360 284 9 73 chr9 16331005 16331107 -107745065 + PB1D10 SINE Alu 9 105 -12 4 709 279 0 0 0 chr9 16331107 16331138 -107745034 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4 709 420 20 0 0 chr9 16331207 16331256 -107744916 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 709 280 271 24 0 chr9 16331840 16331925 -107744247 - MLT1D LTR MaLR -2 503 417 4 709 257 352 16 16 chr9 16332104 16332228 -107743944 - MLT1D LTR MaLR -381 124 1 4 709 294 282 26 0 chr9 16332250 16332328 -107743844 + L2a LINE L2 3096 3175 -251 4 709 240 338 52 97 chr9 16332679 16332833 -107743339 + MIRc SINE MIR 17 163 -105 4 709 346 200 9 35 chr9 16332908 16333022 -107743150 + (CAGAGA)n Simple_repeat Simple_repeat 1 111 0 4 709 316 309 31 23 chr9 16333608 16333737 -107742435 + Charlie7 DNA MER1_type 587 716 -1896 4 709 894 180 0 0 chr9 16334255 16334433 -107741739 + CT-rich Low_complexity Low_complexity 3 180 0 4 709 229 236 66 22 chr9 16334799 16334890 -107741282 + MLT1D LTR MaLR 402 496 -9 4 709 211 289 156 0 chr9 16335029 16335119 -107741053 + MIRc SINE MIR 111 214 -54 4 709 285 75 0 0 chr9 16335223 16335263 -107740909 + (A)n Simple_repeat Simple_repeat 1 40 0 4 709 978 171 68 6 chr9 16336881 16337058 -107739114 - B3 SINE B2 -20 196 9 4 709 781 271 98 0 chr9 16337224 16337256 -107738916 - MER63C DNA AcHobo -20 910 879 4 709 387 0 0 0 chr9 16337256 16337299 -107738873 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 709 1114 280 94 4 chr9 16337299 16337710 -107738462 - MER63C DNA AcHobo -52 878 416 4 709 777 110 0 0 chr9 16337892 16338010 -107738162 + (TC)n Simple_repeat Simple_repeat 1 118 0 4 709 572 309 73 14 chr9 16338031 16338251 -107737921 - Lx8 LINE L1 -198 7275 7043 4 709 510 330 99 57 chr9 16338251 16338656 -107737516 - MER63C DNA AcHobo -501 429 8 4 709 483 187 39 11 chr9 16338761 16338878 -107737294 - B1F SINE Alu -27 122 2 4 709 21 57 0 0 chr9 16339687 16339722 -107736450 + AT_rich Low_complexity Low_complexity 1 35 0 4 709 531 248 24 43 chr9 16339744 16339908 -107736264 - RSINE1 SINE B4 0 165 5 4 709 246 207 0 0 chr9 16340208 16340266 -107735906 + T-rich Low_complexity Low_complexity 2 59 0 4 709 233 375 38 0 chr9 16340287 16340367 -107735805 + PB1D7 SINE Alu 4 86 -34 4 709 291 253 13 39 chr9 16340365 16340443 -107735729 + ID4 SINE ID 7 82 -1 4 709 22 35 0 0 chr9 16340607 16340636 -107735536 + AT_rich Low_complexity Low_complexity 1 29 0 4 709 378 0 0 0 chr9 16340983 16341025 -107735147 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 709 363 44 0 0 chr9 16341061 16341106 -107735066 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 4 709 194 83 56 0 chr9 16341232 16341268 -107734904 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 4 709 493 318 19 13 chr9 16341446 16341602 -107734570 - RSINE1 SINE B4 -6 159 3 4 709 351 226 42 102 chr9 16342680 16342798 -107733374 - ID_B1 SINE B4 -1 223 113 4 709 261 414 9 0 chr9 16342828 16342939 -107733233 + LTR16A1 LTR ERVL 9 120 -336 4 709 267 291 47 0 chr9 16343247 16343333 -107732839 + MER58A DNA MER1_type 26 115 -109 4 709 224 214 0 0 chr9 16343564 16343606 -107732566 + CT-rich Low_complexity Low_complexity 2 43 0 4 709 22 0 0 0 chr9 16344237 16344259 -107731913 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 505 267 30 0 chr9 16345246 16345377 -107730795 + B1_Mur1 SINE Alu 2 136 -13 4 709 450 344 161 38 chr9 16345593 16346116 -107730056 - L4 LINE RTE -202 1827 1241 4 709 1200 279 19 88 chr9 16347006 16347371 -107728801 + ORR1E LTR MaLR 8 347 -12 4 709 2959 67 26 0 chr9 16347754 16348144 -107728028 - MTB LTR MaLR 0 400 1 4 709 264 231 163 65 chr9 16348506 16348659 -107727513 + LTR90B LTR LTR 217 384 -412 4 709 239 339 58 0 chr9 16348693 16348814 -107727358 + LTR90B LTR LTR 615 742 -54 4 709 1107 249 121 26 chr9 16348933 16349462 -107726710 + RMER20B LTR ERVK 3 581 -46 4 709 14168 113 12 3 chr9 16349462 16351838 -107724334 + L1_Mus3 LINE L1 3527 5921 -717 4 709 814 252 44 0 chr9 16352369 16352575 -107723597 + B3 SINE B2 1 215 -1 4 709 2920 209 80 82 chr9 16352896 16353519 -107722653 - RMER17B LTR ERVK 0 958 366 4 709 2638 38 0 0 chr9 16353519 16353835 -107722337 + L1Md_T LINE L1 6267 6582 0 4 709 2920 209 80 82 chr9 16353835 16354171 -107722001 - RMER17B LTR ERVK -593 365 1 4 709 273 172 0 0 chr9 16354641 16354705 -107721467 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 709 813 286 0 83 chr9 16354705 16354934 -107721238 - B4A SINE B4 0 292 83 4 709 503 259 179 4 chr9 16354990 16355242 -107720930 - Lx9 LINE L1 -24 7620 7325 4 709 4533 65 40 0 chr9 16356476 16357075 -107719097 + L1Md_F2 LINE L1 5948 6570 -12 4 709 2410 177 73 8 chr9 16358626 16359105 -107717067 + RLTR11A2 LTR ERVK 18 527 0 4 709 1152 51 0 0 chr9 16359335 16359472 -107716700 - B1_Mus2 SINE Alu -10 137 1 4 709 991 283 86 51 chr9 16359486 16359836 -107716336 + MTEb LTR MaLR 18 379 0 4 709 215 106 78 78 chr9 16359859 16359910 -107716262 + MIRc SINE MIR 96 146 -122 4 709 318 178 33 25 chr9 16361080 16361201 -107714971 + CT-rich Low_complexity Low_complexity 3 124 0 4 709 215 161 18 0 chr9 16361222 16361278 -107714894 + CT-rich Low_complexity Low_complexity 1 57 0 4 709 296 312 70 81 chr9 16361327 16361585 -107714587 + Charlie18a DNA MER1_type 63 317 -25 4 709 196 284 103 68 chr9 16361605 16361722 -107714450 + MIRb SINE MIR 13 133 -135 4 709 316 395 59 12 chr9 16362113 16362282 -107713890 - LTR16A LTR ERVL -152 299 123 4 709 291 272 158 0 chr9 16362336 16362450 -107713722 + MLT1C LTR MaLR 22 153 -237 4 709 297 297 140 35 chr9 16362539 16362682 -107713490 + MLT1C LTR MaLR 298 455 -12 4 709 444 19 0 0 chr9 16364242 16364295 -107711877 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 709 21 0 0 0 chr9 16365179 16365200 -107710972 + AT_rich Low_complexity Low_complexity 1 21 0 4 709 24 0 0 0 chr9 16366041 16366065 -107710107 + AT_rich Low_complexity Low_complexity 1 24 0 4 709 1390 321 21 48 chr9 16366402 16366887 -107709285 + Lx9 LINE L1 6770 7241 -403 4 709 1155 45 6 6 chr9 16366887 16367045 -107709127 + L1Md_F3 LINE L1 6427 6584 0 4 709 1390 321 21 48 chr9 16367045 16367275 -107708897 + Lx9 LINE L1 7242 7466 -178 4 709 331 300 0 10 chr9 16367276 16367373 -107708799 - MTE-int LTR MaLR -512 1068 982 4 709 32211 80 11 10 chr9 16367592 16373652 -107702520 + L1Md_F2 LINE L1 535 6582 0 4 709 529 314 84 25 chr9 16373722 16374060 -107702112 + L1M3 LINE L1 3087 3446 -2694 5 709 378 0 0 0 chr9 16374060 16374102 -107702070 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 709 529 314 84 25 chr9 16374102 16374252 -107701920 + L1M3 LINE L1 3447 3604 -2536 5 709 208 256 74 53 chr9 16374599 16374694 -107701478 + MIRb SINE MIR 84 180 -88 5 709 2262 62 6 56 chr9 16375713 16376037 -107700135 + L1_Mus2 LINE L1 6257 6564 -2 5 709 236 317 47 55 chr9 16376221 16376348 -107699824 - MIRb SINE MIR -95 173 48 5 709 479 325 26 13 chr9 16377760 16377916 -107698256 - B3A SINE B2 -23 175 18 5 709 28 29 0 0 chr9 16377971 16378006 -107698166 + AT_rich Low_complexity Low_complexity 1 35 0 5 709 360 0 0 0 chr9 16381115 16381155 -107695017 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 709 252 0 0 0 chr9 16381155 16381182 -107694990 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 709 281 296 134 43 chr9 16381243 16381430 -107694742 + LTR16A1 LTR ERVL 207 410 -46 5 709 241 216 0 0 chr9 16381976 16382027 -107694145 + MTEa LTR MaLR 1 51 -328 5 709 21 36 0 0 chr9 16382677 16382705 -107693467 + AT_rich Low_complexity Low_complexity 1 28 0 5 709 570 284 39 22 chr9 16382713 16382893 -107693279 - B3A SINE B2 -15 183 1 5 709 671 75 0 9 chr9 16383376 16383484 -107692688 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 710 240 368 79 8 chr9 16384034 16384160 -107692012 + MER58B DNA MER1_type 206 340 -1 5 710 292 253 87 11 chr9 16384330 16384422 -107691750 + MIR3 SINE MIR 106 204 -4 5 710 395 320 138 77 chr9 16385725 16386074 -107690098 + MLT1A LTR MaLR 1 370 -4 5 710 274 294 118 108 chr9 16386291 16386623 -107689549 - MLT1B LTR MaLR -55 335 1 5 710 476 305 86 32 chr9 16386680 16386900 -107689272 - MIRb SINE MIR -11 257 26 5 710 27 0 0 0 chr9 16388382 16388409 -107687763 + AT_rich Low_complexity Low_complexity 1 27 0 5 710 998 88 123 19 chr9 16388417 16388579 -107687593 - L1_Mus3 LINE L1 -6 6632 6454 5 710 346 242 112 77 chr9 16389744 16389914 -107686258 + MER3 DNA MER1_type 3 178 -31 5 710 522 323 66 0 chr9 16390064 16390321 -107685851 - L1M2 LINE L1 -520 5771 5498 5 710 3306 64 5 12 chr9 16390420 16390832 -107685340 + L1_Mus2 LINE L1 6158 6566 0 5 710 255 125 0 0 chr9 16391188 16391228 -107684944 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 710 463 308 7 15 chr9 16391276 16391411 -107684761 - B3A SINE B2 -63 135 2 5 710 779 300 90 18 chr9 16392350 16392628 -107683544 + ORR1D2 LTR MaLR 73 370 0 5 710 1155 195 44 0 chr9 16392656 16392861 -107683311 - B3 SINE B2 -2 214 1 5 710 250 373 39 49 chr9 16393499 16393992 -107682180 - RodERV21-int LTR ERV1 -3017 4074 3587 5 710 5980 276 49 69 chr9 16394121 16396009 -107680163 - RodERV21-int LTR ERV1 -2286 2705 863 5 710 3599 35 2 2 chr9 16396009 16396405 -107679767 + MTA_Mm LTR MaLR 1 396 0 5 710 5980 276 49 69 chr9 16396405 16396577 -107679595 - RodERV21-int LTR ERV1 -4129 862 687 5 710 684 290 44 60 chr9 16396508 16396827 -107679345 - RMER17C-int LTR ERVK -2714 524 211 5 710 231 281 0 17 chr9 16397167 16397225 -107678947 - RMER21A LTR ERV1 -260 687 631 5 710 622 308 160 0 chr9 16397440 16397690 -107678482 - B4A SINE B4 -2 290 1 5 710 485 205 8 0 chr9 16398133 16398255 -107677917 + (CA)n Simple_repeat Simple_repeat 1 123 0 5 710 369 359 40 51 chr9 16398255 16398431 -107677741 + Arthur1B DNA Tip100 133 306 -919 5 710 263 241 0 0 chr9 16398449 16398503 -107677669 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 710 4033 33 35 0 chr9 16398989 16399443 -107676729 - L1Md_T LINE L1 0 6582 6113 5 710 351 315 53 24 chr9 16399802 16399971 -107676201 - Arthur1 DNA Tip100 -732 3215 3042 5 710 210 118 0 0 chr9 16400495 16400529 -107675643 + (ATG)n Simple_repeat Simple_repeat 2 35 0 5 710 2610 50 3 6 chr9 16400803 16401122 -107675050 + L1Md_F2 LINE L1 6265 6582 0 5 710 23 0 0 0 chr9 16401623 16401646 -107674526 + AT_rich Low_complexity Low_complexity 1 23 0 5 710 1008 108 0 0 chr9 16401897 16402063 -107674109 + (TG)n Simple_repeat Simple_repeat 2 167 0 5 710 279 118 0 0 chr9 16402262 16402313 -107673859 + URR1B DNA MER1_type 109 159 -66 5 710 388 337 25 60 chr9 16402542 16402741 -107673431 - MTE2b LTR MaLR -183 196 5 5 710 263 321 3 44 chr9 16402781 16402922 -107673250 + B4A SINE B4 3 133 -32 5 710 1000 254 33 14 chr9 16404599 16404912 -107671260 - Lx7 LINE L1 -443 5860 5560 5 710 195 69 0 0 chr9 16405570 16405599 -107670573 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 710 24 53 0 0 chr9 16406270 16406308 -107669864 + AT_rich Low_complexity Low_complexity 1 38 0 5 710 420 55 0 0 chr9 16406534 16406589 -107669583 + (CATA)n Simple_repeat Simple_repeat 1 55 0 5 710 186 189 0 0 chr9 16406591 16406628 -107669544 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 5 710 2368 57 0 65 chr9 16407827 16408113 -107668059 - L1_Mus2 LINE L1 -614 5952 5675 5 710 1208 82 0 0 chr9 16408113 16408259 -107667913 + B1_Mus1 SINE Alu 2 147 -1 5 710 284 0 0 27 chr9 16408260 16408297 -107667875 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 710 2368 57 0 65 chr9 16408297 16408347 -107667825 - L1_Mus2 LINE L1 -892 5674 5636 5 710 5083 73 2 0 chr9 16408347 16408964 -107667208 + L1_Mus2 LINE L1 5948 6565 -1 5 710 1658 33 16 0 chr9 16408977 16409160 -107667012 + B2_Mm1t SINE B2 1 186 -7 5 710 23 54 0 0 chr9 16409163 16409200 -107666972 + AT_rich Low_complexity Low_complexity 1 37 0 5 710 340 349 29 21 chr9 16409946 16410186 -107665986 - L1MA4 LINE L1 -453 5847 5606 5 710 366 299 22 7 chr9 16410421 16410556 -107665616 - L1MB7 LINE L1 -2 6182 6046 5 710 1287 105 28 6 chr9 16410582 16410764 -107665408 + B2_Mm2 SINE B2 4 189 -6 5 710 337 262 89 16 chr9 16410802 16410997 -107665175 - L1MB7 LINE L1 -160 6018 5812 5 710 239 241 19 0 chr9 16411042 16411096 -107665076 - ID4 SINE ID -1 82 28 5 710 36075 52 0 4 chr9 16411098 16416935 -107659237 + L1Md_T LINE L1 1 5589 -297 5 710 8839 38 3 0 chr9 16416935 16417928 -107658244 + L1Md_T LINE L1 5590 6585 0 5 710 257 290 43 64 chr9 16418017 16418157 -107658015 - L1M4 LINE L1 -498 5686 5550 5 710 317 260 114 34 chr9 16418229 16418404 -107657768 + L1MA5 LINE L1 5680 5868 -432 5 710 192 77 0 0 chr9 16418570 16418596 -107657576 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 710 419 292 121 15 chr9 16418596 16418728 -107657444 - RSINE1 SINE B4 -18 147 2 5 710 1168 102 0 0 chr9 16418925 16419072 -107657100 - B1_Mus1 SINE Alu 0 148 2 5 710 1091 298 67 50 chr9 16419628 16419662 -107656510 + ORR1D2 LTR MaLR 5 32 -338 5 710 393 39 0 0 chr9 16419662 16419713 -107656459 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 710 1091 298 67 50 chr9 16419713 16420038 -107656134 + ORR1D2 LTR MaLR 33 370 0 5 710 32975 78 1 11 chr9 16420293 16425622 -107650550 + L1Md_F2 LINE L1 311 5586 -297 5 710 8480 57 2 1 chr9 16425622 16426617 -107649555 + L1Md_F2 LINE L1 5587 6582 0 5 710 9523 106 35 0 chr9 16428032 16429901 -107646271 + L1_Mur1 LINE L1 209 2548 -3338 5 710 3537 5 0 0 chr9 16429901 16430268 -107645904 - IAPLTR1_Mm LTR ERVK 0 367 1 5 710 7660 30 3 0 chr9 16430268 16431140 -107645032 - IAPEz-int LTR ERVK 0 6481 5607 5 710 3524 8 0 0 chr9 16431143 16431510 -107644662 - IAPLTR1_Mm LTR ERVK 0 367 1 5 710 840 251 56 50 chr9 16431516 16431873 -107644299 - RLTR10D LTR ERVK 0 359 1 5 710 17815 91 17 15 chr9 16431873 16432265 -107643907 + L1_Mur1 LINE L1 2543 2936 -2950 5 710 3182 50 45 5 chr9 16432265 16432646 -107643526 - MTA_Mm LTR MaLR 0 396 1 5 710 17815 91 17 15 chr9 16432646 16434866 -107641306 + L1_Mur1 LINE L1 2937 5159 -727 5 710 5211 108 38 0 chr9 16434867 16435578 -107640594 + Lx3_Mus LINE L1 6272 7009 0 5 710 9238 76 24 3 chr9 16435611 16436803 -107639369 + Lx3_Mus LINE L1 5785 7001 -8 5 710 1047 242 13 9 chr9 16436807 16437040 -107639132 + RLTR42-int LTR ERVK 1155 1388 -4134 5 710 2383 87 132 11 chr9 16437040 16437388 -107638784 + RLTR10 LTR ERVK 1 390 0 5 710 393 302 63 8 chr9 16437426 16437553 -107638619 - Lx6 LINE L1 -147 7313 7180 5 710 18412 66 4 5 chr9 16437693 16440798 -107635374 - L1Md_F2 LINE L1 0 6582 3480 5 710 318 346 112 51 chr9 16441539 16441850 -107634322 - ORR1E LTR MaLR 0 359 30 5 710 2157 99 10 3 chr9 16442225 16442520 -107633652 + L1_Mus3 LINE L1 6342 6638 0 5 710 1001 276 47 41 chr9 16443020 16443338 -107632834 + MTEa LTR MaLR 1 320 -59 5 710 370 191 0 16 chr9 16443390 16443454 -107632718 + RMER15 LTR ERVL 1 63 -512 5 710 1303 177 63 12 chr9 16443451 16443660 -107632512 + RMER15 LTR ERVL 309 530 -45 5 710 375 23 0 0 chr9 16443660 16443704 -107632468 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 710 1310 177 63 12 chr9 16443704 16443746 -107632426 + RMER15 LTR ERVL 531 572 -3 5 710 21 0 0 0 chr9 16444603 16444624 -107631548 + AT_rich Low_complexity Low_complexity 1 21 0 5 710 347 291 68 41 chr9 16447646 16447793 -107628379 + MIRb SINE MIR 78 228 -40 5 710 1064 258 145 21 chr9 16447904 16448372 -107627800 + Lx8 LINE L1 6943 7468 -5 5 710 241 298 0 56 chr9 16448293 16448382 -107627790 + RMER1C Other Other 1242 1325 -17 5 710 551 297 8 0 chr9 16448566 16448694 -107627478 - ID_B1 SINE B4 -6 218 90 5 710 311 273 39 29 chr9 16448709 16448811 -107627361 - PB1 SINE Alu -4 123 21 5 710 270 321 57 28 chr9 16448815 16448956 -107627216 + MIRb SINE MIR 96 240 -28 5 710 508 256 21 35 chr9 16450070 16450205 -107625967 + ID_B1 SINE B4 80 220 -72 5 710 191 331 71 65 chr9 16450740 16450895 -107625277 - MIRc SINE MIR -107 161 6 5 710 405 0 0 0 chr9 16450979 16451024 -107625148 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 710 252 0 0 0 chr9 16451024 16451051 -107625121 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 710 1378 84 26 0 chr9 16451067 16451257 -107624915 - B2_Mm2 SINE B2 0 195 1 5 710 242 330 62 35 chr9 16451778 16451891 -107624281 + PB1D7 SINE Alu 3 118 -2 5 710 422 127 0 25 chr9 16451891 16451972 -107624200 + (CAA)n Simple_repeat Simple_repeat 1 79 0 5 710 271 297 95 0 chr9 16452204 16452278 -107623894 - RMER15 LTR ERVL 0 575 495 6 710 269 417 48 4 chr9 16452300 16452529 -107623643 - Lx8 LINE L1 -166 7307 7069 6 710 2674 50 0 6 chr9 16452593 16452933 -107623239 - MTA_Mm LTR MaLR -8 338 1 6 710 6876 72 2 6 chr9 16452933 16453871 -107622301 - MTA_Mm-int LTR MaLR 0 1792 859 6 710 3029 53 0 0 chr9 16453874 16454249 -107621923 - L1Md_T LINE L1 0 6582 6208 6 710 26611 59 17 5 chr9 16454268 16458614 -107617558 - L1Md_T LINE L1 -1192 4691 331 6 710 5667 91 23 9 chr9 16458615 16459473 -107616699 - MTA_Mm-int LTR MaLR -920 872 3 6 710 2716 68 75 8 chr9 16459473 16459844 -107616328 - MTA_Mm LTR MaLR 0 396 1 6 710 653 271 71 30 chr9 16460690 16460888 -107615284 + B3 SINE B2 6 211 -5 6 710 318 146 0 35 chr9 16462339 16462400 -107613772 + CT-rich Low_complexity Low_complexity 25 83 0 6 710 1242 100 0 0 chr9 16462400 16462580 -107613592 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 710 318 146 0 35 chr9 16462580 16462603 -107613569 + polypyrimidine Low_complexity Low_complexity 2 24 0 6 710 666 196 105 0 chr9 16462606 16462739 -107613433 - B1_Mus1 SINE Alu 0 148 2 6 710 450 326 7 0 chr9 16462958 16463093 -107613079 - B1_Mur1 SINE Alu -9 140 5 6 710 241 314 29 20 chr9 16465352 16465466 -107610706 + MIRc SINE MIR 12 125 -143 6 710 4602 152 17 3 chr9 16466769 16467543 -107608629 + Lx LINE L1 5861 6645 -9 6 710 2269 110 3 25 chr9 16467591 16467954 -107608218 - Lx3B LINE L1 -298 5588 5234 6 710 7614 121 38 17 chr9 16467953 16469260 -107606912 + Lx3B LINE L1 5635 6968 -5 6 710 289 312 101 59 chr9 16469354 16469592 -107606580 - L2 LINE L2 -772 2647 2400 6 710 4760 122 81 5 chr9 16470065 16470867 -107605305 + RMER17D LTR ERVK 27 889 0 6 710 2338 37 34 0 chr9 16472353 16472648 -107603524 + L1Md_F3 LINE L1 6278 6582 -2 6 710 873 330 26 15 chr9 16472707 16472975 -107603197 + B4A SINE B4 2 272 -20 6 710 648 38 0 0 chr9 16472976 16473055 -107603117 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 710 381 70 0 0 chr9 16473056 16473113 -107603059 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 710 853 268 10 0 chr9 16473219 16473424 -107602748 - B3 SINE B2 -6 210 4 6 710 5137 88 33 44 chr9 16473426 16473915 -107602257 + RLTR13C2 LTR ERVK 1 477 -331 6 710 566 42 42 0 chr9 16473915 16474011 -107602161 - L1Md_F3 LINE L1 0 6584 6485 6 710 5137 88 33 44 chr9 16474011 16474338 -107601834 + RLTR13C2 LTR ERVK 478 807 -1 6 710 346 296 25 42 chr9 16474346 16474442 -107601730 + B4A SINE B4 175 270 -22 6 710 360 0 0 0 chr9 16474442 16474482 -107601690 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 710 346 296 25 42 chr9 16474482 16474505 -107601667 + B4A SINE B4 271 292 0 6 710 231 167 0 0 chr9 16474508 16474550 -107601622 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 710 5543 112 78 21 chr9 16474588 16475494 -107600678 + RMER17B LTR ERVK 1 958 0 6 710 1144 88 0 0 chr9 16475502 16475649 -107600523 - B1_Mus2 SINE Alu 0 147 1 6 710 22 0 0 0 chr9 16475703 16475725 -107600447 + AT_rich Low_complexity Low_complexity 1 22 0 6 710 22 0 0 0 chr9 16475987 16476009 -107600163 + AT_rich Low_complexity Low_complexity 1 22 0 6 710 24 32 0 0 chr9 16476140 16476171 -107600001 + AT_rich Low_complexity Low_complexity 1 31 0 6 710 259 194 37 9 chr9 16476184 16476293 -107599879 + (TA)n Simple_repeat Simple_repeat 1 112 0 6 710 926 256 70 109 chr9 16476295 16476682 -107599490 - MT2A LTR ERVL -95 506 3 6 710 5144 133 33 8 chr9 16477906 16479108 -107597064 + L1VL4 LINE L1 1 1238 -2321 6 710 5155 102 2 11 chr9 16479107 16480658 -107595514 + L1Md_F LINE L1 402 1937 -3946 6 710 5634 71 0 1 chr9 16480653 16481442 -107594730 + L1Md_F LINE L1 3828 4615 -1268 6 710 8805 45 7 0 chr9 16481438 16482342 -107593830 - L1Md_F2 LINE L1 -430 6152 5249 6 710 468 0 0 0 chr9 16482342 16482394 -107593778 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 710 8805 72 18 1 chr9 16482394 16482998 -107593174 - L1Md_F2 LINE L1 -635 5248 4624 6 710 15617 173 26 19 chr9 16482997 16487041 -107589131 + Lx2 LINE L1 2584 6634 -363 6 710 1175 158 37 0 chr9 16487041 16487256 -107588916 + Lx2 LINE L1 6775 6997 0 6 710 462 76 67 0 chr9 16487348 16487453 -107588719 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 6 710 333 384 71 5 chr9 16487467 16487679 -107588493 - MER90a LTR ERV1 -25 589 364 6 710 681 56 0 0 chr9 16487911 16488001 -107588171 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 710 351 165 35 7 chr9 16488015 16488162 -107588010 + (TCTA)n Simple_repeat Simple_repeat 1 151 0 6 710 237 159 0 0 chr9 16488166 16488210 -107587962 + (CACCAT)n Simple_repeat Simple_repeat 5 48 0 6 710 425 302 24 8 chr9 16488261 16488388 -107587784 + B1F SINE Alu 13 141 -8 6 710 330 26 0 0 chr9 16488465 16488504 -107587668 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 710 1163 75 0 0 chr9 16489351 16489498 -107586674 + B1_Mus2 SINE Alu 1 147 0 6 710 231 0 0 0 chr9 16489498 16489526 -107586646 - L1_Mm LINE L1 -881 5002 4975 6 710 182 77 0 71 chr9 16489526 16489568 -107586604 + (A)n Simple_repeat Simple_repeat 1 39 0 6 710 34534 43 12 3 chr9 16490287 16495389 -107580783 + L1Md_T LINE L1 466 5586 -297 6 710 8071 54 0 0 chr9 16495389 16496385 -107579787 + L1Md_T LINE L1 5587 6582 0 6 710 267 31 0 0 chr9 16496413 16496445 -107579727 + (A)n Simple_repeat Simple_repeat 1 32 0 6 710 468 0 0 0 chr9 16497156 16497208 -107578964 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 710 1361 71 5 32 chr9 16497246 16497436 -107578736 + B2_Mm1t SINE B2 2 186 -7 6 710 269 169 17 0 chr9 16497779 16497838 -107578334 + CT-rich Low_complexity Low_complexity 5 64 0 6 710 766 328 51 7 chr9 16497838 16498111 -107578061 - B4A SINE B4 0 292 8 6 710 182 33 0 62 chr9 16498233 16498265 -107577907 + (TCTCCC)n Simple_repeat Simple_repeat 6 35 0 6 710 290 221 92 31 chr9 16498292 16498390 -107577782 - PB1 SINE Alu -3 124 21 6 710 1211 194 14 90 chr9 16499286 16499575 -107576597 + ORR1B2 LTR MaLR 3 269 -98 6 710 350 21 21 0 chr9 16499784 16499831 -107576341 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 6 710 683 189 52 0 chr9 16499834 16499999 -107576173 - Lx2 LINE L1 -81 6916 6775 6 710 305 47 0 0 chr9 16500000 16500043 -107576129 - Lx2 LINE L1 -355 6642 6600 1 710 928 113 12 3 chr9 16500026 16500169 -107576003 + Lx2 LINE L1 6442 6585 -473 1 710 1175 270 22 42 chr9 16500170 16500529 -107575643 + MT2A LTR ERVL 108 459 -74 2 710 6333 33 0 0 chr9 16500565 16501313 -107574859 - L1Md_T LINE L1 0 6582 5835 3 710 618 280 83 89 chr9 16501368 16501740 -107574432 + ORR1D2 LTR MaLR 1 370 0 4 710 4271 142 13 16 chr9 16502118 16502863 -107573309 + RMER17A2 LTR ERVK 1 743 -163 5 710 266 200 9 19 chr9 16503133 16503240 -107572932 - Lx7 LINE L1 -149 7547 7442 6 710 3432 224 59 63 chr9 16503226 16504758 -107571414 - Lx7 LINE L1 -203 7493 5857 6 710 2863 95 18 2 chr9 16504758 16505158 -107571014 + MTB_Mm LTR MaLR 1 406 -1 7 710 3432 175 30 15 chr9 16505158 16505734 -107570438 - Lx7 LINE L1 -1840 5856 5268 6 710 6162 132 20 0 chr9 16505738 16506927 -107569245 + L1_Mus4 LINE L1 4818 6032 -604 8 710 493 289 74 11 chr9 16506943 16507132 -107569040 - B3 SINE B2 -13 203 3 9 710 435 107 0 0 chr9 16507266 16507341 -107568831 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 1 710 245 286 81 69 chr9 16507998 16508171 -107568001 - MIRc SINE MIR -5 263 82 1 710 249 327 84 42 chr9 16508593 16508759 -107567413 + L3 LINE CR1 4304 4476 -13 1 710 230 370 143 0 chr9 16509238 16509357 -107566815 + MER45B DNA Tip100 26 161 -879 1 710 7991 29 0 0 chr9 16509376 16510304 -107565868 - L1Md_T LINE L1 -5 6577 5650 1 710 4891 14 2 0 chr9 16510297 16510859 -107565313 + L1Md_T LINE L1 5081 5643 -240 1 710 333 339 88 41 chr9 16510896 16511216 -107564956 + MER45B DNA Tip100 244 578 -462 1 710 245 316 37 25 chr9 16511354 16511435 -107564737 + MLT1J1 LTR MaLR 226 307 -137 1 710 457 295 77 24 chr9 16511807 16511977 -107564195 + B3A SINE B2 4 182 -16 1 710 22 35 0 0 chr9 16512095 16512124 -107564048 + AT_rich Low_complexity Low_complexity 1 29 0 1 710 244 197 66 0 chr9 16514316 16514377 -107561795 - L1MC2 LINE L1 -109 6235 6171 1 710 222 337 19 75 chr9 16514657 16514763 -107561409 - PB1D10 SINE Alu -7 110 11 1 711 285 340 130 0 chr9 16515328 16515490 -107560682 + MIRb SINE MIR 71 253 -15 2 711 396 59 0 0 chr9 16516895 16516946 -107559226 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 2 711 21 0 0 0 chr9 16517274 16517295 -107558877 + AT_rich Low_complexity Low_complexity 1 21 0 2 711 2868 71 39 3 chr9 16519051 16519433 -107556739 + MTA_Mm LTR MaLR 1 396 0 2 711 348 311 19 0 chr9 16519454 16519557 -107556615 + PB1D7 SINE Alu 1 105 -15 2 711 186 43 0 0 chr9 16519563 16519586 -107556586 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 711 611 272 26 26 chr9 16519725 16519989 -107556183 + L1MEg LINE L1 1297 1560 -4524 2 711 402 176 35 0 chr9 16520492 16520585 -107555587 - L1_Mur3 LINE L1 -421 5465 5365 2 711 706 276 64 0 chr9 16520916 16521072 -107555100 - B3A SINE B2 -31 167 2 2 711 514 330 46 29 chr9 16521573 16521854 -107554318 + B4A SINE B4 3 288 -4 2 711 447 78 0 0 chr9 16521871 16521935 -107554237 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 711 1852 212 85 162 chr9 16522060 16522722 -107553450 - RMER19C LTR ERVK 0 611 1 3 711 341 330 63 34 chr9 16522763 16523001 -107553171 - RLTR15 LTR ERVK -15 344 100 3 711 403 176 116 36 chr9 16523108 16523220 -107552952 - RLTR15 LTR ERVK -238 121 1 3 711 35087 67 7 5 chr9 16523930 16529874 -107546298 - L1Md_F3 LINE L1 0 6584 633 3 711 2727 68 11 0 chr9 16530575 16530926 -107545246 - L1Md_F2 LINE L1 -14 6568 6214 3 711 1341 223 102 45 chr9 16530969 16531326 -107544846 + RMER10A LTR ERVL 16 405 -37 3 711 905 103 19 0 chr9 16531326 16531481 -107544691 + (TTTCC)n Simple_repeat Simple_repeat 4 161 0 3 711 1341 223 102 45 chr9 16531481 16531527 -107544645 + RMER10A LTR ERVL 406 442 0 3 711 204 314 132 55 chr9 16531609 16531791 -107544381 + L3 LINE CR1 4193 4388 -101 3 711 273 310 57 25 chr9 16532527 16532686 -107543486 + MER5A1 DNA MER1_type 1 164 -2 3 711 219 319 133 47 chr9 16533140 16533277 -107542895 + MIRm SINE MIR 28 173 -95 3 711 275 271 222 6 chr9 16533865 16534032 -107542140 + MIRb SINE MIR 20 222 -46 4 711 1061 130 36 5 chr9 16537239 16537432 -107538740 + L1_Mus2 LINE L1 6368 6566 0 4 711 2994 211 71 39 chr9 16537473 16538566 -107537606 + L1_Mus1 LINE L1 326 1314 -5320 4 711 934 26 0 8 chr9 16538571 16538689 -107537483 + ORR1A1 LTR MaLR 222 338 -8 4 711 17408 130 10 21 chr9 16538689 16541688 -107534484 + L1_Mus1 LINE L1 1655 4620 -1263 4 711 31796 88 9 4 chr9 16541684 16546847 -107529325 + L1Md_F2 LINE L1 392 5584 -299 4 711 6555 89 50 4 chr9 16546849 16547790 -107528382 + L1Md_F2 LINE L1 5587 6570 -12 4 711 2500 151 5 14 chr9 16547793 16548231 -107527941 + L1_Mus1 LINE L1 4601 5034 -849 4 711 3296 100 17 6 chr9 16548248 16548730 -107527442 - RLTR1C LTR ERV1 -16 487 1 4 711 6921 107 7 0 chr9 16548730 16550256 -107525916 + L1_Mus1 LINE L1 5032 6567 0 4 711 4195 88 0 0 chr9 16550269 16550836 -107525336 + L1_Mus2 LINE L1 6000 6566 0 4 711 2343 149 10 3 chr9 16550943 16551334 -107524838 - L1_Mus3 LINE L1 -1 6637 6244 4 711 319 145 14 14 chr9 16552347 16552417 -107523755 + (CATA)n Simple_repeat Simple_repeat 1 70 0 4 711 630 297 45 40 chr9 16552557 16552757 -107523415 + B3 SINE B2 2 202 -14 4 711 317 304 16 87 chr9 16552790 16552916 -107523256 + PB1D9 SINE Alu 4 120 0 5 711 1539 0 0 0 chr9 16553258 16553429 -107522743 + (TTCCC)n Simple_repeat Simple_repeat 5 175 0 5 711 329 230 30 114 chr9 16554364 16554531 -107521641 + L1_Rod LINE L1 5511 5663 -184 5 711 339 301 50 57 chr9 16556048 16556189 -107519983 + MER5B DNA MER1_type 39 178 0 5 711 250 344 43 11 chr9 16559428 16559522 -107516650 + MIRc SINE MIR 30 126 -142 5 711 5499 196 143 6 chr9 16560060 16561738 -107514434 + Lx2B LINE L1 805 2728 -3158 5 711 1139 216 98 44 chr9 16561874 16562228 -107513944 - RLTR26 LTR ERVK -226 416 28 5 711 6115 202 25 15 chr9 16562254 16563810 -107512362 + Lx2B LINE L1 5416 6996 -4 5 711 216 0 0 0 chr9 16563822 16563846 -107512326 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 5 711 1686 70 75 45 chr9 16563937 16564205 -107511967 - Lx3_Mus LINE L1 -8 7001 6726 5 711 25 65 0 0 chr9 16564321 16564367 -107511805 + AT_rich Low_complexity Low_complexity 1 46 0 5 711 496 339 31 26 chr9 16564945 16565136 -107511036 - B3A SINE B2 -3 195 4 6 711 236 366 10 29 chr9 16565759 16565863 -107510309 + MTEa LTR MaLR 1 102 -277 6 711 2246 273 174 9 chr9 16566089 16566929 -107509243 - Lx6 LINE L1 -27 7433 6262 6 711 2995 223 8 26 chr9 16566904 16567652 -107508520 - Lx6 LINE L1 -1196 5854 5116 6 711 2319 188 14 11 chr9 16567905 16568709 -107507463 + L1VL4 LINE L1 713 1525 -2389 6 711 3529 35 0 0 chr9 16568709 16569131 -107507041 - L1Md_T LINE L1 -1 6581 6160 6 711 15183 167 30 15 chr9 16569132 16569252 -107506920 + L1VL4 LINE L1 2662 2784 -3093 6 711 189 0 0 0 chr9 16569252 16569273 -107506899 + (CAA)n Simple_repeat Simple_repeat 1 21 0 6 711 15183 167 30 15 chr9 16569273 16572135 -107504037 + L1VL4 LINE L1 2785 5689 -188 6 711 1169 161 5 9 chr9 16572133 16572353 -107503819 - Lx6 LINE L1 -1498 4382 4164 6 711 824 250 137 118 chr9 16572356 16572702 -107503470 + RLTR23 LTR ERV1 1 359 -71 6 711 3942 79 55 27 chr9 16572702 16573168 -107503004 + L1_Mus2 LINE L1 5950 6439 -127 6 711 3698 128 147 34 chr9 16573168 16573514 -107502658 + RMER17D2 LTR ERVK 1 379 -430 6 711 813 21 0 0 chr9 16573514 16573609 -107502563 + (TCTCC)n Simple_repeat Simple_repeat 2 96 0 6 711 3698 128 147 34 chr9 16573609 16573989 -107502183 + RMER17D2 LTR ERVK 380 809 0 6 711 3942 79 55 27 chr9 16573989 16574122 -107502050 + L1_Mus2 LINE L1 6440 6566 0 6 711 824 250 137 118 chr9 16574122 16574197 -107501975 + RLTR23 LTR ERV1 360 430 0 6 711 369 0 0 0 chr9 16574248 16574289 -107501883 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 711 1321 232 58 30 chr9 16574291 16574620 -107501552 - Lx5 LINE L1 -20 7030 6693 7 711 2078 219 105 30 chr9 16574626 16575190 -107500982 + Lx5 LINE L1 6083 6688 -362 7 711 2957 208 95 6 chr9 16575167 16575985 -107500187 - Lx6 LINE L1 -2404 3476 2586 6 711 6094 39 3 0 chr9 16576125 16576851 -107499321 + L1Md_F2 LINE L1 5853 6580 -2 7 711 26 64 0 0 chr9 16577247 16577294 -107498878 + AT_rich Low_complexity Low_complexity 1 47 0 7 711 1728 249 30 0 chr9 16577320 16577714 -107498458 + MTD LTR MaLR 12 417 -2 7 711 2841 45 0 3 chr9 16577956 16578314 -107497858 + L1Md_F3 LINE L1 6228 6584 0 7 711 24 0 0 0 chr9 16579228 16579252 -107496920 + AT_rich Low_complexity Low_complexity 1 24 0 7 711 228 313 19 18 chr9 16580567 16580670 -107495502 + MIRb SINE MIR 128 235 -33 7 711 797 276 79 40 chr9 16580886 16581381 -107494791 + L1M2 LINE L1 4870 5383 -760 7 711 1931 216 35 2 chr9 16581558 16581957 -107494215 - MTC LTR MaLR -5 416 5 7 711 284 325 58 7 chr9 16581985 16582170 -107494002 + L1M2 LINE L1 5585 5779 -518 7 711 216 0 0 0 chr9 16582182 16582206 -107493966 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 711 180 0 0 0 chr9 16582541 16582561 -107493611 + (T)n Simple_repeat Simple_repeat 1 20 0 8 711 972 72 59 18 chr9 16583605 16583775 -107492397 - L1_Mus3 LINE L1 0 6638 6462 8 711 350 335 122 17 chr9 16584216 16584453 -107491719 - MLT1D LTR MaLR -11 494 233 8 711 1509 208 77 3 chr9 16584491 16584843 -107491329 + ORR1C1 LTR MaLR 1 378 0 8 711 408 20 0 0 chr9 16586520 16586569 -107489603 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 711 26 30 0 0 chr9 16587201 16587234 -107488938 + AT_rich Low_complexity Low_complexity 1 33 0 8 711 248 0 31 0 chr9 16588016 16588048 -107488124 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 8 711 209 131 0 62 chr9 16588848 16588913 -107487259 + GA-rich Low_complexity Low_complexity 3 63 0 8 711 329 290 46 40 chr9 16588916 16589067 -107487105 + HAL1-3A_ME LINE L1 2284 2435 -423 8 711 306 322 70 0 chr9 16589062 16589177 -107486995 + HAL1-3A_ME LINE L1 2285 2407 -451 9 711 1114 300 98 39 chr9 16589187 16589930 -107486242 + MTE2a-int LTR MaLR 24 1456 -124 9 711 202 378 63 0 chr9 16590147 16590258 -107485914 - MIR SINE MIR -1 261 144 9 711 633 277 147 100 chr9 16591534 16591896 -107484276 + MTD LTR MaLR 1 379 0 9 711 584 266 62 51 chr9 16591974 16591992 -107484180 - B3A SINE B2 -18 180 165 9 711 1143 56 0 43 chr9 16591992 16592180 -107483992 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 711 584 266 62 51 chr9 16592180 16592339 -107483833 - B3A SINE B2 -34 164 1 9 711 268 294 125 22 chr9 16593891 16594075 -107482097 + L2a LINE L2 3214 3416 -10 9 711 243 219 45 45 chr9 16594216 16594283 -107481889 + B3A SINE B2 2 68 -130 9 711 259 307 0 13 chr9 16594337 16594413 -107481759 - B4A SINE B4 -217 75 1 9 711 1048 225 10 0 chr9 16594477 16594686 -107481486 + URR1B DNA MER1_type 15 225 0 9 711 21 0 0 0 chr9 16594780 16594801 -107481371 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 334 333 126 10 chr9 16594843 16595052 -107481120 + B4 SINE B4 12 247 -45 1 711 26351 106 7 91 chr9 16595054 16600023 -107476149 + L1Md_F2 LINE L1 1071 5585 -298 1 711 8031 50 2 0 chr9 16600024 16601017 -107475155 + L1Md_F2 LINE L1 5587 6581 -1 1 711 8532 102 3 1 chr9 16601017 16602975 -107473197 + L1_Mus1 LINE L1 4605 6566 -1 1 711 261 0 0 0 chr9 16602984 16603013 -107473159 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 711 745 288 5 73 chr9 16603702 16603908 -107472264 + B3A SINE B2 7 198 0 1 711 269 349 91 34 chr9 16604027 16604202 -107471970 - MER74B LTR ERVL -190 432 248 1 711 3302 43 2 0 chr9 16604545 16604940 -107471232 - MTA_Mm LTR MaLR 0 396 1 1 711 3268 43 5 0 chr9 16605859 16606253 -107469919 + MTA_Mm LTR MaLR 1 396 0 1 711 289 350 47 42 chr9 16606549 16606761 -107469411 + MIRc SINE MIR 54 266 -2 1 711 7691 162 27 130 chr9 16607749 16609954 -107466218 - ORR1B1-int LTR MaLR -17 1946 15 1 711 37 52 0 0 chr9 16610044 16610102 -107466070 + AT_rich Low_complexity Low_complexity 1 58 0 1 711 210 71 0 0 chr9 16610907 16610935 -107465237 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 711 23 33 0 0 chr9 16611435 16611465 -107464707 + AT_rich Low_complexity Low_complexity 1 30 0 1 711 234 275 143 0 chr9 16611518 16611609 -107464563 - MER97a DNA MER1_type? -1 893 790 1 711 387 308 10 12 chr9 16611722 16611932 -107464240 + Lx7 LINE L1 5681 5929 -383 1 711 368 292 112 20 chr9 16613540 16613736 -107462436 + Lx9 LINE L1 7257 7470 -174 1 711 257 182 88 29 chr9 16614004 16614106 -107462066 + Lx7 LINE L1 7469 7576 -120 1 711 261 190 17 0 chr9 16614129 16614187 -107461985 + L1MA6 LINE L1 5504 5562 -729 1 711 625 274 130 14 chr9 16614236 16614748 -107461424 + L1MA6 LINE L1 5648 6244 -56 1 711 642 232 133 10 chr9 16614790 16614986 -107461186 + ID_B1 SINE B4 2 221 -3 1 711 749 120 8 0 chr9 16617205 16617338 -107458834 + (TTTTC)n Simple_repeat Simple_repeat 2 135 0 1 711 3333 114 56 22 chr9 16617338 16617875 -107458297 - Lx LINE L1 -17 6637 6083 1 711 1724 134 89 87 chr9 16618424 16618898 -107457274 - IAPLTR2_Mm LTR ERVK 0 475 1 1 711 1008 83 0 0 chr9 16619233 16619365 -107456807 + B1_Mm SINE Alu 14 145 -2 1 711 666 326 64 34 chr9 16620334 16620692 -107455480 - ORR1D2 LTR MaLR -1 369 1 1 711 368 269 72 63 chr9 16621686 16621797 -107454375 + PB1D10 SINE Alu 1 112 -15 1 711 373 291 194 0 chr9 16622466 16622631 -107453541 + B3 SINE B2 5 201 -15 1 711 624 285 42 37 chr9 16622700 16622915 -107453257 - B3 SINE B2 0 216 1 1 711 351 358 103 13 chr9 16622971 16623203 -107452969 + MIR SINE MIR 1 253 -9 1 711 3912 14 0 0 chr9 16623207 16623647 -107452525 - L1Md_A LINE L1 0 6582 6143 1 711 3036 17 0 0 chr9 16623647 16624008 -107452164 + L1Md_A LINE L1 5801 6161 -421 1 711 180 0 0 0 chr9 16624438 16624458 -107451714 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1 711 4475 72 27 33 chr9 16624637 16625271 -107450901 - L1Md_F2 LINE L1 0 6582 5953 1 711 480 46 15 0 chr9 16625271 16625336 -107450836 + L1Md_F2 LINE L1 5882 5947 -635 1 711 326 311 106 9 chr9 16625628 16625855 -107450317 - L1M4 LINE L1 -404 5780 5532 1 711 539 352 61 29 chr9 16625861 16626171 -107450001 + MLT1A0 LTR MaLR 4 323 -42 1 711 16302 118 16 2 chr9 16626348 16629027 -107447145 + L1_Mm LINE L1 2951 5667 -216 1 711 6868 136 4 2 chr9 16629026 16630232 -107445940 - L1_Mm LINE L1 -2860 3023 1815 1 711 238 129 143 16 chr9 16630534 16630597 -107445575 - Lx6 LINE L1 0 7460 7390 1 711 2631 289 27 92 chr9 16630663 16631832 -107444340 - Lx6 LINE L1 -263 7197 6105 1 711 199 360 27 0 chr9 16632396 16632471 -107443701 + MIRc SINE MIR 70 146 -122 1 711 6762 84 3 5 chr9 16632535 16633959 -107442213 - L1_Mus1 LINE L1 0 6567 5147 1 711 487 0 32 0 chr9 16634134 16634197 -107441975 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 711 224 149 21 0 chr9 16634229 16634276 -107441896 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 711 624 311 41 69 chr9 16634284 16634574 -107441598 - B4A SINE B4 0 292 11 1 711 807 57 0 0 chr9 16634667 16634772 -107441400 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 711 301 319 64 52 chr9 16635122 16635294 -107440878 + MIRb SINE MIR 88 261 -1 1 711 234 0 0 0 chr9 16635364 16635390 -107440782 + (T)n Simple_repeat Simple_repeat 1 26 0 1 711 1325 333 56 29 chr9 16637236 16637848 -107438324 - MER82 DNA MER2_type -9 644 17 1 711 33860 35 0 0 chr9 16638096 16643753 -107432419 + L1Md_T LINE L1 1 5589 -297 1 711 9043 5 0 0 chr9 16643753 16644822 -107431350 + L1Md_T LINE L1 5590 6585 0 1 711 479 55 29 66 chr9 16644965 16645101 -107431071 + A-rich Low_complexity Low_complexity 3 133 0 1 711 1851 234 67 33 chr9 16645285 16645895 -107430277 - RCHARR1 DNA MER1_type 0 974 344 1 711 298 353 35 18 chr9 16645915 16646085 -107430087 - RCHARR1 DNA MER1_type -685 289 117 1 712 60 37 0 0 chr9 16646165 16646246 -107429926 + AT_rich Low_complexity Low_complexity 1 81 0 1 712 332 364 19 13 chr9 16646558 16646714 -107429458 + MIRb SINE MIR 54 210 -58 1 712 199 255 185 34 chr9 16646794 16646940 -107429232 + MIR SINE MIR 18 185 -77 1 712 350 314 103 82 chr9 16647185 16647237 -107428935 - LTR40c LTR ERVL -49 413 359 1 712 414 0 0 0 chr9 16647237 16647283 -107428889 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 712 702 332 21 14 chr9 16647287 16647568 -107428604 - B4A SINE B4 -8 284 2 1 712 427 314 103 82 chr9 16647568 16647878 -107428294 - LTR40c LTR ERVL -94 371 40 1 712 351 121 0 0 chr9 16648143 16648201 -107427971 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 712 2852 74 25 0 chr9 16649429 16649835 -107426337 - L1_Mus3 LINE L1 -22 6616 6201 1 712 4185 163 26 66 chr9 16652676 16653119 -107423053 - L1_Mur1 LINE L1 -96 5787 5338 1 712 735 61 0 0 chr9 16653119 16653217 -107422955 - B1_Mus2 SINE Alu -8 139 42 1 712 296 188 130 65 chr9 16653154 16653262 -107422910 - RLTR25B LTR ERVK -519 509 395 1 712 4185 163 26 66 chr9 16653262 16653980 -107422192 - L1_Mur1 LINE L1 -96 5337 4605 1 712 343 277 0 29 chr9 16654003 16654107 -107422065 + MLT1B LTR MaLR 11 111 -279 1 712 4280 79 88 0 chr9 16654107 16654701 -107421471 + Lx3_Mus LINE L1 6364 7009 0 1 712 22 35 0 0 chr9 16654718 16654747 -107421425 + AT_rich Low_complexity Low_complexity 1 29 0 1 712 853 97 15 0 chr9 16654758 16654892 -107421280 + (TA)n Simple_repeat Simple_repeat 2 137 0 1 712 365 322 22 84 chr9 16654897 16655124 -107421048 + MLT1B LTR MaLR 106 318 -72 1 712 910 214 15 0 chr9 16655222 16655423 -107420749 - RMER17B LTR ERVK 0 958 755 1 712 486 120 0 0 chr9 16655907 16655982 -107420190 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 712 251 361 51 29 chr9 16656169 16656306 -107419866 - MIRb SINE MIR -29 239 100 1 712 2681 184 66 18 chr9 16657562 16657854 -107418318 - RLTR20B3 LTR ERVK 0 577 280 1 712 183 42 0 0 chr9 16657854 16657878 -107418294 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 712 2681 184 66 18 chr9 16657878 16658132 -107418040 - RLTR20B3 LTR ERVK -298 279 7 1 712 823 283 16 69 chr9 16658213 16658517 -107417655 - B4 SINE B4 -3 289 2 1 712 5011 22 2 0 chr9 16658547 16659128 -107417044 - L1Md_A LINE L1 0 6582 6001 1 712 38741 23 6 7 chr9 16659128 16665819 -107410353 - L1Md_A LINE L1 0 5883 1 1 712 833 152 0 0 chr9 16667015 16667140 -107409032 - ORR1B1 LTR MaLR -8 386 262 1 712 2335 209 60 88 chr9 16667140 16667775 -107408397 - RLTR26 LTR ERVK 0 642 26 1 712 18712 137 25 11 chr9 16667775 16670907 -107405265 - MERVK26-int LTR ERVK -807 6112 2935 1 712 21086 88 34 8 chr9 16670907 16674967 -107401205 + L1Md_F LINE L1 104 4270 -1613 1 712 3216 72 7 9 chr9 16674967 16675403 -107400769 + L1Md_F2 LINE L1 6147 6581 -1 1 712 1660 118 3 73 chr9 16675403 16675704 -107400468 - MERVK26-int LTR ERVK -3975 2944 2665 1 712 2203 87 171 3 chr9 16675704 16675804 -107400368 - RLTR44A LTR ERVK 0 405 282 1 712 252 0 0 0 chr9 16675804 16675832 -107400340 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1 712 2203 87 171 3 chr9 16675832 16676077 -107400095 - RLTR44A LTR ERVK -124 281 4 1 712 4236 62 4 0 chr9 16676078 16676627 -107399545 - RLTR44-int LTR ERVK 0 2812 2262 1 712 6339 58 9 22 chr9 16676621 16676638 -107399534 - RLTR44-int LTR ERVK -1131 1681 1666 1 712 189 0 0 0 chr9 16676638 16676659 -107399513 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 712 6339 71 12 27 chr9 16676659 16677649 -107398523 - RLTR44-int LTR ERVK -1147 1665 803 1 712 707 66 0 28 chr9 16677676 16677785 -107398387 - RLTR44-int LTR ERVK -1920 892 787 1 712 1247 121 76 0 chr9 16677865 16678088 -107398084 - RLTR44-int LTR ERVK -2571 241 2 1 712 1236 125 392 10 chr9 16678088 16678210 -107397962 - RLTR44A LTR ERVK -2 450 244 1 712 396 0 0 0 chr9 16678210 16678254 -107397918 + (CAA)n Simple_repeat Simple_repeat 3 46 0 1 712 1716 98 18 0 chr9 16678254 16678499 -107397673 - RLTR44A LTR ERVK -209 243 1 1 712 8661 147 26 14 chr9 16678499 16679120 -107397052 - MERVK26-int LTR ERVK -4249 2670 2055 1 712 290 26 0 25 chr9 16679120 16679160 -107397012 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 712 8661 147 26 14 chr9 16679160 16680013 -107396159 - MERVK26-int LTR ERVK -4865 2054 1178 1 712 3139 169 8 27 chr9 16680003 16680594 -107395578 - MERVK26-int LTR ERVK -6323 596 17 1 712 1797 232 51 41 chr9 16681352 16681896 -107394276 - RLTR26 LTR ERVK -4 638 1 1 712 1100 195 66 22 chr9 16681896 16682122 -107394050 - ORR1B2 LTR MaLR -127 240 5 1 712 849 303 99 11 chr9 16682328 16682599 -107393573 - B4A SINE B4 0 292 1 1 712 628 349 85 13 chr9 16683365 16683754 -107392418 - MLT1F LTR MaLR -64 484 68 1 712 198 143 0 0 chr9 16683889 16683924 -107392248 + (CATG)n Simple_repeat Simple_repeat 3 37 0 1 712 453 183 12 0 chr9 16684497 16684579 -107391593 + B3A SINE B2 1 83 -115 1 712 216 0 0 0 chr9 16685122 16685146 -107391026 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 712 641 296 64 55 chr9 16685228 16685530 -107390642 + RLTR11A2 LTR ERVK 1 293 -152 1 712 248 267 46 28 chr9 16685645 16685753 -107390419 + RLTR11A2 LTR ERVK 314 423 -30 1 712 187 327 19 0 chr9 16685963 16686015 -107390157 + MIR SINE MIR 62 114 -148 1 712 2152 217 12 7 chr9 16687704 16688113 -107388059 - MTC LTR MaLR 0 421 11 1 712 802 178 71 44 chr9 16688423 16688605 -107387567 + ORR1D1 LTR MaLR 198 384 0 1 712 4134 241 77 54 chr9 16688606 16689973 -107386199 + ORR1D1-int LTR MaLR 1 1936 -27 1 712 551 127 0 8 chr9 16689973 16690092 -107386080 + (TC)n Simple_repeat Simple_repeat 1 118 0 1 712 816 222 97 10 chr9 16690092 16690288 -107385884 + ORR1D1 LTR MaLR 172 384 0 1 712 43 56 0 0 chr9 16690486 16690557 -107385615 + AT_rich Low_complexity Low_complexity 1 71 0 1 712 754 101 75 30 chr9 16690899 16691032 -107385140 - L1_Mus1 LINE L1 0 6567 6429 1 712 383 316 68 44 chr9 16692383 16692588 -107383584 + MER77 LTR ERVL 384 593 -14 1 712 456 62 0 0 chr9 16694030 16694094 -107382078 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 712 342 0 0 0 chr9 16694262 16694300 -107381872 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 712 822 277 14 19 chr9 16694303 16694513 -107381659 - B3 SINE B2 0 216 8 1 712 522 272 8 8 chr9 16694546 16694672 -107381500 - Lx8 LINE L1 -141 7332 7207 2 712 423 327 128 25 chr9 16695722 16695876 -107380296 + RMER15 LTR ERVL 265 423 -152 2 712 1123 88 0 0 chr9 16695876 16696024 -107380148 + B1_Mus1 SINE Alu 1 148 0 2 712 423 327 128 25 chr9 16696024 16696151 -107380021 + RMER15 LTR ERVL 424 575 0 2 712 491 0 17 0 chr9 16696411 16696470 -107379702 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 712 183 271 207 50 chr9 16696533 16696673 -107379499 + L3 LINE CR1 4005 4166 -323 2 712 237 373 27 9 chr9 16696576 16696687 -107379485 - MIRm SINE MIR -6 270 158 2 712 424 354 7 0 chr9 16697382 16697526 -107378646 + ID_B1 SINE B4 80 224 0 2 712 200 337 32 11 chr9 16698716 16698809 -107377363 + L2 LINE L2 2783 2877 -542 2 712 1136 49 28 0 chr9 16698810 16698953 -107377219 + B1_Mm SINE Alu 1 147 0 2 712 624 27 0 0 chr9 16698957 16699031 -107377141 + (AATAG)n Simple_repeat Simple_repeat 2 75 0 2 712 218 255 0 52 chr9 16699054 16699112 -107377060 + ID2 SINE ID 20 74 -9 2 712 290 250 25 0 chr9 16699281 16699495 -107376677 + (CA)n Simple_repeat Simple_repeat 1 219 0 2 712 387 164 13 52 chr9 16699505 16699582 -107376590 + HAL1-3A_ME LINE L1 1976 2049 -809 2 712 302 356 25 17 chr9 16700023 16700143 -107376029 - MIR SINE MIR -137 125 5 2 712 1122 62 7 0 chr9 16701152 16701298 -107374874 - B1_Mus2 SINE Alu 0 147 1 2 712 270 371 72 7 chr9 16701963 16702115 -107374057 - LTR16A LTR ERVL -95 356 195 2 712 240 325 12 0 chr9 16702417 16702500 -107373672 + MER5A1 DNA MER1_type 35 118 -48 2 712 452 324 122 11 chr9 16703015 16703277 -107372895 - B4 SINE B4 0 292 2 2 712 486 0 0 0 chr9 16703914 16703968 -107372204 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 712 29 60 0 0 chr9 16704533 16704583 -107371589 + AT_rich Low_complexity Low_complexity 1 50 0 2 712 4781 143 29 10 chr9 16705411 16706279 -107369893 - Lx3C LINE L1 -304 6672 5789 2 712 1557 147 32 39 chr9 16706280 16706563 -107369609 + Lx3B LINE L1 6689 6969 -4 2 712 1423 260 28 25 chr9 16708923 16709282 -107366890 - MTEb LTR MaLR -19 360 1 2 712 344 306 53 18 chr9 16710339 16710452 -107365720 - RMER15 LTR ERVL -160 415 299 2 712 263 270 46 93 chr9 16710456 16710607 -107365565 - RMER15 LTR ERVL -418 157 14 2 712 297 0 0 0 chr9 16713780 16713813 -107362359 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 712 461 47 16 0 chr9 16714039 16714103 -107362069 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 712 591 53 0 0 chr9 16714127 16714202 -107361970 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 2 712 344 210 19 31 chr9 16714203 16714365 -107361807 + (CATATA)n Simple_repeat Simple_repeat 1 160 0 2 712 354 322 7 13 chr9 16714384 16714538 -107361634 + (CATA)n Simple_repeat Simple_repeat 3 155 0 2 712 786 244 270 15 chr9 16714538 16714948 -107361224 + MT2A LTR ERVL 1 514 -19 2 712 360 0 0 0 chr9 16714951 16714991 -107361181 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 712 516 231 29 4 chr9 16715256 16715376 -107360796 - PB1D10 SINE Alu 0 117 1 2 712 450 290 81 77 chr9 16716105 16716340 -107359832 - B4A SINE B4 -14 278 43 2 712 248 131 0 21 chr9 16716354 16716401 -107359771 + CT-rich Low_complexity Low_complexity 2 47 0 2 712 456 19 0 0 chr9 16716728 16716781 -107359391 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 712 287 321 37 19 chr9 16716837 16716945 -107359227 + MLT1A0 LTR MaLR 250 359 -6 2 712 1553 97 5 0 chr9 16717088 16717305 -107358867 - L1_Mus2 LINE L1 -1 6565 6348 2 712 4960 95 4 0 chr9 16717305 16718022 -107358150 + L1_Mm LINE L1 4947 5666 -217 2 712 187 79 53 0 chr9 16718272 16718310 -107357862 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 712 432 0 0 0 chr9 16720185 16720233 -107355939 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 712 432 0 0 0 chr9 16720233 16720280 -107355892 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 712 255 193 24 12 chr9 16720308 16720392 -107355780 + CT-rich Low_complexity Low_complexity 6 90 0 2 712 491 0 17 0 chr9 16720452 16720511 -107355661 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 712 1101 251 51 61 chr9 16720636 16720798 -107355374 - Lx9 LINE L1 -7 7637 7488 2 712 1170 42 0 0 chr9 16720798 16720942 -107355230 + (TCTA)n Simple_repeat Simple_repeat 3 146 0 2 712 1101 251 51 61 chr9 16720942 16721285 -107354887 - Lx9 LINE L1 -157 7487 7137 2 712 231 365 56 9 chr9 16721286 16721394 -107354778 - B4 SINE B4 -103 189 77 2 712 871 266 183 6 chr9 16721561 16721883 -107354289 - MTE2b LTR MaLR 0 379 1 2 712 270 143 0 0 chr9 16722005 16722054 -107354118 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 712 634 52 10 30 chr9 16722067 16722167 -107354005 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 712 6620 187 20 57 chr9 16722168 16722388 -107353784 - Lx4A LINE L1 -5 7053 6870 2 712 297 0 0 0 chr9 16722388 16722421 -107353751 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2 712 6620 187 20 57 chr9 16722421 16722439 -107353733 - Lx4A LINE L1 -189 6869 6866 2 712 3160 52 21 0 chr9 16722439 16722827 -107353345 + MTA_Mm LTR MaLR 1 396 0 2 712 7586 168 51 24 chr9 16722827 16725289 -107350883 - Lx4A LINE L1 -193 6865 4300 2 712 7943 151 55 7 chr9 16725292 16726904 -107349268 - Lx4A LINE L1 -1692 4185 2497 2 712 1497 99 13 4 chr9 16726921 16727155 -107349017 - L1_Mus3 LINE L1 -5 6633 6398 2 712 2760 97 132 0 chr9 16727156 16727679 -107348493 + L1_Mus3 LINE L1 5803 6394 -244 2 712 6651 166 26 14 chr9 16727671 16729528 -107346644 - Lx4A LINE L1 -3359 2518 552 2 712 928 308 30 76 chr9 16729570 16729967 -107346205 - MTEa LTR MaLR 0 379 1 2 712 377 317 124 0 chr9 16732319 16732464 -107343708 + ID_B1 SINE B4 35 197 -27 2 712 181 377 33 0 chr9 16733173 16733234 -107342938 + L2b LINE L2 3297 3359 -16 2 712 404 322 43 23 chr9 16733502 16733801 -107342371 - L1MA6 LINE L1 -359 5941 5635 2 712 222 37 0 0 chr9 16733845 16733872 -107342300 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 712 1111 58 7 0 chr9 16733874 16734011 -107342161 - B1_Mus1 SINE Alu -10 138 1 2 712 183 350 0 16 chr9 16734540 16734601 -107341571 + MIRm SINE MIR 212 271 -5 2 712 304 366 18 0 chr9 16735896 16736008 -107340164 + ID_B1 SINE B4 81 194 -30 2 712 661 326 12 0 chr9 16736570 16736742 -107339430 + B3A SINE B2 1 174 -24 2 712 429 224 165 49 chr9 16737258 16737422 -107338750 - MTEa LTR MaLR 0 379 197 2 712 229 179 0 0 chr9 16738970 16739009 -107337163 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 712 480 35 0 0 chr9 16739434 16739492 -107336680 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 712 1573 226 19 10 chr9 16741056 16741482 -107334690 + Lx2B LINE L1 6504 6950 -26 2 712 3295 69 9 2 chr9 16741714 16742151 -107334021 + L1_Mus3 LINE L1 6197 6636 -2 2 712 405 0 0 0 chr9 16742463 16742508 -107333664 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 712 222 282 0 52 chr9 16742989 16743105 -107333067 + CT-rich Low_complexity Low_complexity 3 112 0 2 712 378 364 0 7 chr9 16743332 16743476 -107332696 + GA-rich Low_complexity Low_complexity 3 145 0 2 712 30202 79 5 2 chr9 16743637 16748799 -107327373 + L1Md_F2 LINE L1 410 5585 -298 2 712 8047 48 5 3 chr9 16748800 16749792 -107326380 + L1Md_F2 LINE L1 5587 6580 -2 2 712 1293 120 14 5 chr9 16749861 16750070 -107326102 + L1_Mus3 LINE L1 6428 6638 0 2 712 216 67 0 0 chr9 16750070 16750100 -107326072 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 712 2988 90 2 2 chr9 16750179 16750590 -107325582 - L1_Mus2 LINE L1 0 6566 6156 2 712 326 307 58 29 chr9 16751280 16751451 -107324721 - L1MD LINE L1 -1022 5124 4949 2 712 999 39 15 0 chr9 16752208 16752338 -107323834 + RLTR10 LTR ERVK 259 390 0 2 712 7651 53 6 11 chr9 16752339 16753364 -107322808 + RLTR10-int LTR ERVK 9 998 -989 2 712 280 256 62 39 chr9 16753428 16753558 -107322614 + RLTR10-int LTR ERVK 1462 1594 -5987 2 712 8374 20 0 3 chr9 16753640 16754641 -107321531 + RLTR10-int LTR ERVK 990 1987 0 2 712 2507 29 8 274 chr9 16754641 16755173 -107320999 + RLTR10 LTR ERVK 1 390 0 2 712 6364 66 8 5 chr9 16755807 16756673 -107319499 - L1Md_F2 LINE L1 -12 6570 5702 2 712 372 291 78 29 chr9 16756670 16756875 -107319297 - Lx8 LINE L1 0 7473 7259 2 712 899 268 112 21 chr9 16756897 16757236 -107318936 - Lx8 LINE L1 -332 7141 6772 2 712 314 296 19 6 chr9 16757255 16757415 -107318757 - L1M2 LINE L1 -1418 4725 4564 2 712 1426 151 48 0 chr9 16757846 16758098 -107318074 - Lx LINE L1 0 6997 6734 2 712 6829 75 19 10 chr9 16758098 16759490 -107316682 + L1VL4 LINE L1 531 1937 -1622 2 712 4290 147 35 89 chr9 16760627 16761581 -107314591 + RLTR13D6 LTR ERVK 1 902 0 2 712 618 151 0 0 chr9 16762587 16762693 -107313479 + CT-rich Low_complexity Low_complexity 1 106 0 2 712 5486 169 20 19 chr9 16762700 16763338 -107312834 - Lx LINE L1 -2 6652 6003 2 712 1189 48 0 20 chr9 16763338 16763488 -107312684 - B1_Mus1 SINE Alu -1 147 1 2 712 17548 166 104 8 chr9 16763488 16768657 -107307515 - Lx LINE L1 -652 6002 357 2 712 202 122 48 24 chr9 16768683 16768725 -107307447 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 712 417 273 152 27 chr9 16768756 16769091 -107307081 - Lx9 LINE L1 -489 7155 6779 2 712 1932 36 75 0 chr9 16770244 16770496 -107305676 + MTA_Mm LTR MaLR 1 271 -125 2 712 543 31 0 0 chr9 16770496 16770561 -107305611 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 2 712 6966 86 5 1 chr9 16770577 16771657 -107304515 - L1_Mus2 LINE L1 -1 6565 5482 2 712 1817 267 56 34 chr9 16771650 16772447 -107303725 - L1VL4 LINE L1 -5533 1027 281 2 712 4755 124 22 1 chr9 16772494 16773230 -107302942 - Lx LINE L1 0 6654 5904 2 712 185 310 31 87 chr9 16773604 16773731 -107302441 + L3 LINE CR1 2172 2291 -2198 2 712 206 284 0 40 chr9 16773977 16774076 -107302096 + (CATA)n Simple_repeat Simple_repeat 3 97 0 2 712 405 95 0 0 chr9 16774078 16774141 -107302031 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 712 329 242 11 0 chr9 16774143 16774234 -107301938 + (CA)n Simple_repeat Simple_repeat 1 92 0 2 712 1899 119 6 3 chr9 16774445 16774758 -107301414 - L1_Mur2 LINE L1 -1490 4387 4074 2 712 382 298 115 8 chr9 16776261 16776383 -107299789 - ID_B1 SINE B4 -4 220 86 2 712 521 340 39 7 chr9 16776460 16776872 -107299300 + L1MA4A LINE L1 5484 5908 -395 2 713 3709 223 30 48 chr9 16778012 16778351 -107297821 - Lx7 LINE L1 -18 7678 7366 2 713 288 0 0 0 chr9 16778351 16778383 -107297789 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 2 713 3709 223 30 48 chr9 16778383 16778976 -107297196 - Lx7 LINE L1 -331 7365 6763 2 713 209 255 0 0 chr9 16779943 16779990 -107296182 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 713 266 67 22 0 chr9 16780624 16780669 -107295503 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 713 198 0 0 0 chr9 16780669 16780691 -107295481 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 713 312 234 134 45 chr9 16781045 16781157 -107295015 + MER58D DNA MER1_type 265 386 0 3 713 470 229 101 18 chr9 16781684 16781853 -107294319 + MER33 DNA MER1_type 9 191 -133 3 713 5387 102 10 33 chr9 16781909 16782736 -107293436 + RLTR13C2 LTR ERVK 1 808 0 3 713 258 105 0 0 chr9 16784514 16784552 -107291620 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 3 713 1337 278 18 18 chr9 16785169 16785495 -107290677 + MTEb LTR MaLR 23 348 -31 3 713 204 97 0 0 chr9 16785498 16785529 -107290643 + (CAA)n Simple_repeat Simple_repeat 3 33 0 3 713 22 0 0 0 chr9 16785762 16785784 -107290388 + AT_rich Low_complexity Low_complexity 1 22 0 3 713 4526 51 7 5 chr9 16785784 16786353 -107289819 - L1Md_F2 LINE L1 0 6582 6013 3 713 3498 15 2 0 chr9 16786369 16786764 -107289408 + MTA_Mm LTR MaLR 1 396 0 3 713 402 21 0 0 chr9 16787673 16787720 -107288452 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 713 417 54 0 0 chr9 16787720 16787776 -107288396 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 713 192 224 0 0 chr9 16787783 16787850 -107288322 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 713 570 169 0 0 chr9 16787887 16788029 -107288143 + (CA)n Simple_repeat Simple_repeat 2 143 0 3 713 515 87 0 0 chr9 16788183 16788252 -107287920 - Lx2 LINE L1 -227 6770 6702 3 713 1229 119 20 5 chr9 16788252 16788455 -107287717 + L1_Mus4 LINE L1 6431 6636 0 3 713 717 246 7 0 chr9 16788485 16788627 -107287545 + B1_Mus1 SINE Alu 6 148 0 3 713 431 333 88 35 chr9 16789295 16789466 -107286706 + B3A SINE B2 1 180 -18 3 713 546 16 0 0 chr9 16789487 16789550 -107286622 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 713 366 325 8 31 chr9 16789559 16789689 -107286483 - RMER10B LTR ERVL -23 375 249 3 713 1511 42 0 5 chr9 16790166 16790357 -107285815 + L1Md_T LINE L1 6392 6581 -1 3 713 844 127 32 0 chr9 16790357 16790514 -107285658 - Charlie21a DNA MER1_type -175 1038 877 3 713 22 35 0 0 chr9 16791393 16791422 -107284750 + AT_rich Low_complexity Low_complexity 1 29 0 3 713 447 260 96 59 chr9 16791495 16791630 -107284542 - B3 SINE B2 -76 140 1 3 713 23 0 0 0 chr9 16791641 16791664 -107284508 + AT_rich Low_complexity Low_complexity 1 23 0 3 713 265 256 64 43 chr9 16793361 16793455 -107282717 - ORR1D2 LTR MaLR 0 370 275 3 713 470 348 51 30 chr9 16795388 16795625 -107280547 + B4A SINE B4 2 243 -49 3 713 242 304 58 15 chr9 16795926 16796063 -107280109 + L1ME1 LINE L1 5366 5508 -671 3 713 327 341 87 53 chr9 16796428 16796728 -107279444 + L1ME1 LINE L1 5855 6164 -15 3 713 342 300 124 51 chr9 16796771 16797045 -107279127 - L2 LINE L2 -981 2438 2145 3 713 904 48 16 8 chr9 16797115 16797241 -107278931 + (TTTTC)n Simple_repeat Simple_repeat 2 128 0 3 713 186 156 0 0 chr9 16797303 16797348 -107278824 + A-rich Low_complexity Low_complexity 2 46 0 3 713 260 322 52 13 chr9 16797364 16797518 -107278654 + L1MA5 LINE L1 5854 6013 -287 3 713 1436 319 34 13 chr9 16799364 16799841 -107276331 - Lx8 LINE L1 -4 7469 6983 3 713 267 262 61 15 chr9 16801046 16801112 -107275060 - MIR3 SINE MIR -34 174 106 3 713 1093 305 19 21 chr9 16801272 16801747 -107274425 + L1_Rod LINE L1 3965 4438 -1409 3 713 779 279 21 21 chr9 16801965 16802203 -107273969 + Lx6 LINE L1 7206 7443 -17 3 713 294 258 33 82 chr9 16802410 16802592 -107273580 - L1MB7 LINE L1 -277 5907 5735 3 713 723 93 0 0 chr9 16802940 16803058 -107273114 + (TC)n Simple_repeat Simple_repeat 1 118 0 3 713 21 0 0 0 chr9 16803298 16803319 -107272853 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 2893 76 2 10 chr9 16803377 16803778 -107272394 - L1Md_F2 LINE L1 -2 6580 6183 3 713 1178 71 52 0 chr9 16803778 16803933 -107272239 + L1Md_F2 LINE L1 6010 6172 -410 3 713 21 0 0 0 chr9 16804882 16804903 -107271269 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 361 302 55 41 chr9 16804940 16805085 -107271087 + ID_B1 SINE B4 78 224 0 3 713 807 266 35 0 chr9 16805666 16805869 -107270303 + B3 SINE B2 1 210 -6 3 713 209 245 9 36 chr9 16806793 16806903 -107269269 + T-rich Low_complexity Low_complexity 2 108 0 3 713 189 0 0 0 chr9 16807084 16807105 -107269067 + (TTA)n Simple_repeat Simple_repeat 3 23 0 3 713 261 232 15 170 chr9 16807112 16807247 -107268925 - Lx6 LINE L1 -46 7414 7301 3 713 389 353 15 0 chr9 16808046 16808182 -107267990 - ID_B1 SINE B4 -1 223 86 3 713 258 32 0 0 chr9 16808199 16808230 -107267942 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 713 1086 66 0 0 chr9 16808230 16808367 -107267805 - B1_Mus1 SINE Alu -10 138 2 3 713 180 0 0 0 chr9 16808521 16808541 -107267631 + (T)n Simple_repeat Simple_repeat 1 20 0 3 713 3544 63 6 0 chr9 16808730 16809235 -107266937 - L1_Mus1 LINE L1 -528 6039 5532 3 713 1466 92 50 22 chr9 16809235 16809457 -107266715 + L1_Mus1 LINE L1 6339 6566 -1 3 713 1544 36 0 20 chr9 16809571 16809769 -107266403 + L1Md_F3 LINE L1 6377 6570 -14 3 713 180 235 135 19 chr9 16809927 16809979 -107266193 + MIRc SINE MIR 96 153 -115 3 713 25 0 0 0 chr9 16810183 16810208 -107265964 + AT_rich Low_complexity Low_complexity 1 25 0 3 713 402 284 0 0 chr9 16811193 16811281 -107264891 - ID_B1 SINE B4 -56 168 81 3 713 22 0 0 0 chr9 16811884 16811906 -107264266 + AT_rich Low_complexity Low_complexity 1 22 0 3 713 1314 139 9 0 chr9 16811906 16812136 -107264036 + Lx2B LINE L1 6769 7000 0 3 713 920 242 79 94 chr9 16813099 16813428 -107262744 + ORR1D1 LTR MaLR 51 374 0 3 713 822 78 0 0 chr9 16813782 16813897 -107262275 + (TA)n Simple_repeat Simple_repeat 2 116 0 3 713 13323 169 21 13 chr9 16815460 16817029 -107259143 + Lx LINE L1 3194 4650 -1233 3 713 234 0 0 0 chr9 16817029 16817055 -107259117 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 713 13323 150 39 8 chr9 16817055 16818980 -107257192 + Lx LINE L1 4651 6632 -22 3 713 1133 291 66 14 chr9 16818991 16819489 -107256683 + L1MA5 LINE L1 5413 5936 -364 3 713 285 29 0 0 chr9 16819496 16819530 -107256642 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 713 231 61 0 0 chr9 16820572 16820605 -107255567 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3 713 225 0 0 0 chr9 16820720 16820745 -107255427 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3 713 315 49 0 0 chr9 16822618 16822659 -107253513 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 713 349 360 48 24 chr9 16825221 16825386 -107250786 - Tigger5 DNA MER2_type -2167 239 71 3 713 3325 45 0 2 chr9 16825612 16826017 -107250155 + L1Md_F3 LINE L1 6181 6584 0 3 713 298 343 54 26 chr9 16827580 16827876 -107248296 + L1MA9 LINE L1 5698 6006 -291 3 713 1041 265 47 20 chr9 16827972 16828269 -107247903 + Lx6 LINE L1 7019 7323 -137 3 713 567 0 0 0 chr9 16828269 16828332 -107247840 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 3 713 207 0 0 0 chr9 16828621 16828644 -107247528 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 713 942 113 0 0 chr9 16828644 16828777 -107247395 - B1_Mus1 SINE Alu -9 139 7 3 713 249 83 0 0 chr9 16829082 16829118 -107247054 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 713 1019 308 91 19 chr9 16829295 16829722 -107246450 - RCHARR1 DNA MER1_type -452 522 65 3 713 189 121 0 0 chr9 16830092 16830125 -107246047 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 713 752 148 0 24 chr9 16830135 16830260 -107245912 - B1_Mur3 SINE Alu -14 135 14 3 713 314 240 25 119 chr9 16830166 16830284 -107245888 - MT2B LTR ERVL -344 257 151 3 713 352 19 58 0 chr9 16830962 16831014 -107245158 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 713 352 324 0 19 chr9 16831255 16831362 -107244810 + CT-rich Low_complexity Low_complexity 4 108 0 3 713 468 264 34 0 chr9 16831920 16832146 -107244026 + Lx7 LINE L1 5636 5912 -388 3 713 473 205 8 0 chr9 16832610 16832732 -107243440 + Lx9 LINE L1 7514 7636 -8 3 713 461 220 30 0 chr9 16833228 16833328 -107242844 - MamRep605 Unknown Unknown -375 501 399 3 713 24 67 0 0 chr9 16834348 16834393 -107241779 + AT_rich Low_complexity Low_complexity 1 45 0 3 713 225 146 0 0 chr9 16834961 16835009 -107241163 + (ATG)n Simple_repeat Simple_repeat 3 50 0 3 713 363 301 142 20 chr9 16835905 16836102 -107240070 + L1MC LINE L1 3499 3719 -2427 3 713 3442 25 2 0 chr9 16836179 16836574 -107239598 + MTA_Mm LTR MaLR 1 396 0 3 713 219 271 41 14 chr9 16836586 16836732 -107239440 + (TCTA)n Simple_repeat Simple_repeat 3 152 0 3 713 209 250 48 20 chr9 16836800 16836947 -107239225 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 3 713 7272 2 0 0 chr9 16837510 16838310 -107237862 - L1Md_A LINE L1 0 6582 5783 3 713 6343 1 0 0 chr9 16838310 16839046 -107237126 + L1Md_A LINE L1 5062 5797 -86 3 713 5801 67 5 5 chr9 16839061 16839808 -107236364 - L1_Mus2 LINE L1 0 6566 5820 3 713 32815 71 1 1 chr9 16841280 16847423 -107228749 - L1Md_F2 LINE L1 -2 6580 439 3 713 624 27 0 0 chr9 16848109 16848183 -107227989 + (TTC)n Simple_repeat Simple_repeat 1 74 0 3 713 298 150 129 10 chr9 16848183 16848284 -107227888 + RMER17A LTR ERVK 350 462 -289 3 713 1326 214 19 0 chr9 16848771 16849089 -107227083 + Lx6 LINE L1 5012 5335 -545 3 713 3126 183 9 95 chr9 16849089 16849752 -107226420 - RMER19C LTR ERVK 0 611 6 3 713 2283 240 21 14 chr9 16849762 16850737 -107225435 + Lx6 LINE L1 5363 6395 -663 3 713 1436 289 70 14 chr9 16850760 16851290 -107224882 + Lx6 LINE L1 6506 7448 -12 3 713 450 155 0 0 chr9 16851505 16851621 -107224551 + T-rich Low_complexity Low_complexity 3 118 0 3 713 583 234 36 0 chr9 16851623 16851760 -107224412 - B1F2 SINE Alu -7 142 1 3 713 733 314 63 21 chr9 16852531 16852817 -107223355 + RMER15 LTR ERVL 276 573 -2 4 713 1234 298 73 21 chr9 16853140 16853562 -107222610 + RCHARR1 DNA MER1_type 7 450 -524 4 713 755 274 100 25 chr9 16853803 16854308 -107221864 + RCHARR1 DNA MER1_type 392 959 -15 4 713 1286 99 19 24 chr9 16855046 16855254 -107220918 + Lx2 LINE L1 6437 6643 -354 4 713 1489 104 0 0 chr9 16855254 16855466 -107220706 + Lx2 LINE L1 6775 6986 -11 4 713 399 89 0 0 chr9 16855471 16855527 -107220645 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 713 249 33 0 0 chr9 16856309 16856339 -107219833 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 713 360 0 0 0 chr9 16856339 16856378 -107219794 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 713 22 0 0 0 chr9 16857450 16857472 -107218700 + AT_rich Low_complexity Low_complexity 1 22 0 4 713 25 31 0 0 chr9 16857535 16857567 -107218605 + AT_rich Low_complexity Low_complexity 1 32 0 4 713 343 316 132 45 chr9 16857615 16857880 -107218292 + MLT1A0 LTR MaLR 15 302 -63 4 713 180 211 63 95 chr9 16858545 16858608 -107217564 - L3 LINE CR1 -14 4475 4415 4 713 512 341 69 69 chr9 16858768 16859247 -107216925 + L1MA4A LINE L1 3168 3646 -2497 4 713 258 321 47 16 chr9 16859299 16859492 -107216680 + L1_Mur3 LINE L1 3667 3865 -2015 4 713 2632 188 31 18 chr9 16859598 16860106 -107216066 + RLTR11A2 LTR ERVK 1 515 -12 4 713 990 308 55 11 chr9 16860484 16861007 -107215165 + L1MA4A LINE L1 5347 5892 -411 4 713 348 83 0 0 chr9 16861532 16861580 -107214592 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 4 713 780 319 102 40 chr9 16861718 16862315 -107213857 - MER82 DNA MER2_type -13 640 7 4 713 981 88 0 0 chr9 16863222 16863359 -107212813 + (TTCTC)n Simple_repeat Simple_repeat 3 139 0 4 713 36949 5 0 0 chr9 16863444 16869006 -107207166 + L1Md_A LINE L1 25 5586 -297 4 713 9067 3 0 0 chr9 16869006 16870002 -107206170 + L1Md_A LINE L1 5587 6582 0 4 713 4174 72 83 10 chr9 16870025 16870628 -107205544 + RLTR13C2 LTR ERVK 1 647 -161 4 713 3424 65 0 11 chr9 16870632 16871097 -107205075 + L1Md_F2 LINE L1 6100 6559 -23 4 713 826 172 25 13 chr9 16871109 16871268 -107204904 + RLTR13D4 LTR ERVK 873 1033 0 4 713 9198 79 11 1 chr9 16871899 16874098 -107202074 + L1VL1 LINE L1 398 2620 -3263 4 713 3945 76 23 0 chr9 16874098 16874624 -107201548 + L1_Mus1 LINE L1 6030 6567 0 4 713 191 162 24 24 chr9 16874997 16875079 -107201093 + (TA)n Simple_repeat Simple_repeat 1 82 0 4 713 318 83 100 0 chr9 16875122 16875242 -107200930 + (TA)n Simple_repeat Simple_repeat 2 133 0 4 713 213 175 0 0 chr9 16875381 16875421 -107200751 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 713 311 224 31 0 chr9 16875422 16875520 -107200652 - Lx9 LINE L1 -127 7517 7417 4 713 390 177 25 74 chr9 16875505 16875627 -107200545 + Lx9 LINE L1 7500 7615 -29 4 713 387 0 0 0 chr9 16875628 16875671 -107200501 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 713 7589 59 5 3 chr9 16876251 16877340 -107198832 - L1Md_F2 LINE L1 -12 6570 5480 4 713 1055 139 0 6 chr9 16878125 16878306 -107197866 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 713 370 181 32 0 chr9 16878307 16878401 -107197771 + CT-rich Low_complexity Low_complexity 2 98 0 4 713 320 334 30 0 chr9 16878407 16878512 -107197660 - PB1D7 SINE Alu -8 112 5 4 713 4183 75 2 0 chr9 16878623 16879169 -107197003 - L1Md_F2 LINE L1 -1 6581 6035 4 713 1074 79 7 0 chr9 16879338 16879478 -107196694 + B1_Mus2 SINE Alu 1 141 -6 4 713 217 0 61 0 chr9 16879480 16879513 -107196659 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 713 922 153 6 6 chr9 16880058 16880236 -107195936 + GA-rich Low_complexity Low_complexity 3 180 0 4 713 306 374 30 18 chr9 16880567 16880586 -107195586 - HAL1-3A_ME LINE L1 -403 2455 2437 4 713 1410 56 0 0 chr9 16880586 16880766 -107195406 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 713 306 374 30 18 chr9 16880766 16880915 -107195257 - HAL1-3A_ME LINE L1 -422 2436 2285 4 713 612 366 40 40 chr9 16880922 16881195 -107194977 - B4 SINE B4 -18 274 2 4 713 228 292 22 22 chr9 16881659 16881750 -107194422 + MamRep605 Unknown Unknown 201 291 -585 4 713 292 143 0 0 chr9 16881841 16881897 -107194275 - L1MB3 LINE L1 0 6183 6128 4 713 297 75 0 0 chr9 16882084 16882124 -107194048 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 713 960 331 10 24 chr9 16882127 16882421 -107193751 - B4 SINE B4 0 292 3 4 713 378 0 0 0 chr9 16882550 16882592 -107193580 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 713 3997 139 100 7 chr9 16883031 16883384 -107192788 + RMER17D2 LTR ERVK 1 376 -433 4 713 713 12 0 11 chr9 16883384 16883471 -107192701 + (TCTCC)n Simple_repeat Simple_repeat 3 88 0 4 713 3997 139 100 7 chr9 16883471 16883854 -107192318 + RMER17D2 LTR ERVK 377 805 -4 4 713 1020 249 122 12 chr9 16884123 16884452 -107191720 + ORR1D1 LTR MaLR 5 369 -5 4 713 1823 274 47 11 chr9 16886374 16886910 -107189262 + Lx6 LINE L1 6458 7012 -448 4 713 405 0 0 0 chr9 16887792 16887837 -107188335 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 713 489 34 0 0 chr9 16887837 16887895 -107188277 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 713 2156 121 15 6 chr9 16887919 16888253 -107187919 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 713 8742 43 10 6 chr9 16888258 16889330 -107186842 - IAPEz-int LTR ERVK -2 6479 5403 4 713 20858 44 30 16 chr9 16889308 16891938 -107184234 - IAPEz-int LTR ERVK -3807 2674 8 4 713 2141 121 15 6 chr9 16891938 16892272 -107183900 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 713 1506 180 80 10 chr9 16892293 16892607 -107183565 - Lx2A1 LINE L1 0 7008 6673 4 713 2392 148 10 2 chr9 16892633 16893041 -107183131 + L1_Mur2 LINE L1 3778 4188 -1689 4 713 5841 190 65 25 chr9 16893075 16893964 -107182208 - L1VL4 LINE L1 -3204 2682 1712 4 713 1046 98 0 7 chr9 16893964 16894108 -107182064 - B1_Mm SINE Alu 0 147 5 4 713 5841 190 65 25 chr9 16894108 16894321 -107181851 - L1VL4 LINE L1 -4175 1711 1518 4 713 6929 57 15 7 chr9 16894321 16895207 -107180965 - RLTR13B1 LTR ERVK 0 893 1 4 713 5841 127 40 14 chr9 16895207 16895780 -107180392 - L1VL4 LINE L1 -4369 1517 937 4 713 468 0 0 0 chr9 16895780 16895832 -107180340 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 713 2639 207 91 15 chr9 16895832 16896117 -107180055 - L1VL4 LINE L1 -5698 936 452 4 713 580 209 31 7 chr9 16896128 16896299 -107179873 - Lx2 LINE L1 -836 6161 5987 4 713 5923 67 1 4 chr9 16897442 16898210 -107177962 - L1_Mus2 LINE L1 0 6566 5801 4 713 221 241 75 0 chr9 16898954 16899087 -107177085 + (TAGA)n Simple_repeat Simple_repeat 4 146 0 4 713 252 0 0 0 chr9 16899090 16899118 -107177054 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 713 486 0 0 0 chr9 16899241 16899295 -107176877 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 4 713 1096 110 0 0 chr9 16899347 16899493 -107176679 - B1_Mus2 SINE Alu -1 146 1 4 713 461 358 92 8 chr9 16899674 16899925 -107176247 - MLT2B2 LTR ERVL -225 290 19 4 713 1012 97 0 0 chr9 16900582 16900716 -107175456 + B1_Mm SINE Alu 1 134 -13 4 713 345 234 0 0 chr9 16900925 16901036 -107175136 + (CA)n Simple_repeat Simple_repeat 2 112 0 4 713 716 77 8 0 chr9 16901199 16901316 -107174856 + (GA)n Simple_repeat Simple_repeat 2 119 0 4 713 756 299 93 64 chr9 16902067 16902442 -107173730 + MTD LTR MaLR 21 406 -13 4 713 630 164 14 7 chr9 16902493 16902640 -107173532 + (TA)n Simple_repeat Simple_repeat 1 148 0 4 713 552 178 0 0 chr9 16902640 16902741 -107173431 - L1VL4 LINE L1 -5962 340 240 4 713 33 25 0 0 chr9 16902856 16902896 -107173276 + AT_rich Low_complexity Low_complexity 1 40 0 4 713 278 341 60 15 chr9 16904325 16904459 -107171713 - MER34 LTR ERV1 -15 527 388 4 713 709 272 9 49 chr9 16907266 16907490 -107168682 - B3 SINE B2 0 216 2 4 713 693 169 0 0 chr9 16907515 16907651 -107168521 + (CAT)n Simple_repeat Simple_repeat 2 137 0 4 713 410 293 20 20 chr9 16907651 16907752 -107168420 - B1_Mur2 SINE Alu -9 140 40 4 713 202 178 56 0 chr9 16907778 16907868 -107168304 + (TA)n Simple_repeat Simple_repeat 2 96 0 4 713 23 0 0 0 chr9 16907893 16907916 -107168256 + AT_rich Low_complexity Low_complexity 1 23 0 4 713 597 72 0 0 chr9 16907967 16908050 -107168122 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 714 268 282 68 68 chr9 16908470 16908660 -107167512 + RLTR21 LTR ERVK 1066 1255 -317 4 714 214 279 0 0 chr9 16908670 16908731 -107167441 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 714 421 169 117 0 chr9 16909933 16910010 -107166162 + B1_Mm SINE Alu 62 147 0 4 714 586 232 64 38 chr9 16910432 16910589 -107165583 - RMER15 LTR ERVL 0 575 415 4 714 414 371 120 23 chr9 16910840 16911137 -107165035 + MLT1A0 LTR MaLR 11 349 -25 4 714 185 0 40 0 chr9 16912067 16912092 -107164080 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 714 272 398 0 0 chr9 16912095 16912198 -107163974 - PB1D10 SINE Alu -14 103 1 4 714 201 74 0 0 chr9 16912627 16912654 -107163518 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 714 315 105 0 0 chr9 16912661 16912718 -107163454 + (T)n Simple_repeat Simple_repeat 1 57 0 4 714 601 268 31 0 chr9 16912740 16912867 -107163305 - RSINE1 SINE B4 -32 133 3 4 714 513 0 0 0 chr9 16913880 16913937 -107162235 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 714 210 37 0 0 chr9 16915105 16915132 -107161040 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 714 793 148 42 0 chr9 16915873 16916015 -107160157 - URR1A DNA MER1_type 0 226 79 4 714 588 122 0 9 chr9 16916379 16916487 -107159685 - L1_Mus3 LINE L1 -1 6637 6531 4 714 316 290 100 0 chr9 16918084 16918184 -107157988 + B1F SINE Alu 32 141 -8 4 714 208 298 0 0 chr9 16918196 16918253 -107157919 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 4 714 1744 196 58 16 chr9 16920143 16920521 -107155651 + RMER10A LTR ERVL 1 394 -48 4 714 190 384 62 9 chr9 16921394 16921507 -107154665 - MIR SINE MIR -108 154 36 4 714 186 87 21 42 chr9 16921738 16921786 -107154386 + (CAA)n Simple_repeat Simple_repeat 2 48 0 4 714 651 306 27 107 chr9 16921855 16922265 -107153907 + MTE2a LTR MaLR 3 379 0 4 714 234 91 0 0 chr9 16923409 16923442 -107152730 + (TCCCG)n Simple_repeat Simple_repeat 3 35 0 4 714 666 40 29 20 chr9 16923446 16923548 -107152624 + (TTTTC)n Simple_repeat Simple_repeat 3 105 0 4 714 25 51 0 0 chr9 16923934 16923973 -107152199 + AT_rich Low_complexity Low_complexity 1 39 0 4 714 802 237 92 66 chr9 16924746 16925017 -107151155 + RMER20B LTR ERVK 325 602 -25 5 714 2956 33 3 67 chr9 16925256 16925646 -107150526 + RLTR10B2 LTR ERVK 1 365 0 5 714 241 89 22 22 chr9 16926083 16926129 -107150043 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 714 909 316 100 24 chr9 16926500 16926879 -107149293 + Lx8 LINE L1 6779 7186 -287 5 714 4698 40 14 0 chr9 16927800 16928378 -107147794 + L1Md_F3 LINE L1 5985 6570 -14 5 714 2138 133 0 24 chr9 16929756 16930086 -107146086 + Lx LINE L1 6140 6461 -193 5 714 484 126 0 19 chr9 16930947 16931052 -107145120 + L1_Mus1 LINE L1 6465 6567 0 5 714 621 95 38 0 chr9 16931055 16931160 -107145012 + L1_Mus4 LINE L1 6520 6628 -8 5 714 254 29 0 28 chr9 16931165 16931201 -107144971 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 714 403 296 0 0 chr9 16931600 16931688 -107144484 - PB1D10 SINE Alu -29 88 1 5 714 540 107 0 0 chr9 16931976 16932060 -107144112 + L1_Mus2 LINE L1 6483 6566 0 5 714 208 70 23 23 chr9 16932547 16932591 -107143581 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 714 1000 123 0 7 chr9 16932599 16932746 -107143426 - B1_Mus2 SINE Alu 0 147 2 5 714 366 23 0 0 chr9 16933344 16933387 -107142785 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 714 1349 311 52 23 chr9 16934172 16934820 -107141352 - Lx8 LINE L1 -31 7442 6754 5 714 995 61 0 0 chr9 16934845 16934977 -107141195 + L1_Mus2 LINE L1 6435 6566 0 5 714 459 297 143 38 chr9 16935087 16935138 -107141034 + L1MA4A LINE L1 5564 5608 -695 5 714 1665 252 9 12 chr9 16935138 16935560 -107140612 + MTC LTR MaLR 1 421 0 5 714 459 297 143 38 chr9 16935560 16935851 -107140321 + L1MA4A LINE L1 5609 5941 -362 5 714 382 260 28 37 chr9 16935934 16936042 -107140130 + PB1D10 SINE Alu 10 116 -1 5 714 237 304 0 0 chr9 16936144 16936213 -107139959 + GA-rich Low_complexity Low_complexity 1 69 0 5 714 432 0 0 0 chr9 16938021 16938069 -107138103 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 714 482 275 31 58 chr9 16938780 16939073 -107137099 + L1MA7 LINE L1 5835 6119 -172 5 714 22 0 0 0 chr9 16939216 16939238 -107136934 + AT_rich Low_complexity Low_complexity 1 22 0 5 714 22 0 0 0 chr9 16939492 16939514 -107136658 + AT_rich Low_complexity Low_complexity 1 22 0 5 714 384 22 0 0 chr9 16939823 16939868 -107136304 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 714 265 273 34 68 chr9 16940348 16940466 -107135706 - Lx6 LINE L1 -36 7424 7311 5 714 216 0 0 0 chr9 16940517 16940541 -107135631 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 714 2287 195 57 2 chr9 16940932 16941624 -107134548 + L1_Mur3 LINE L1 993 1723 -4154 5 714 2829 63 0 0 chr9 16941625 16941989 -107134183 + L1_Mus1 LINE L1 6204 6567 0 5 714 2022 142 15 34 chr9 16942004 16942411 -107133761 + L1_Mur3 LINE L1 2865 3263 -2614 5 714 2374 216 93 9 chr9 16942412 16943320 -107132852 + Lx5 LINE L1 5777 6816 -242 5 714 450 0 0 0 chr9 16944918 16944968 -107131204 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 714 473 174 11 153 chr9 16945074 16945264 -107130908 - Lx9 LINE L1 -5 7639 7477 5 714 366 156 0 0 chr9 16945264 16945328 -107130844 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 714 2088 230 23 47 chr9 16945376 16945420 -107130752 - Lx9 LINE L1 -128 7516 7478 5 714 189 0 0 0 chr9 16945420 16945441 -107130731 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 714 2088 230 23 47 chr9 16945441 16945921 -107130251 - Lx9 LINE L1 -167 7477 6999 5 714 592 86 0 0 chr9 16945921 16946014 -107130158 - L1_Mus3 LINE L1 0 6638 6546 5 714 2088 230 23 47 chr9 16946014 16946086 -107130086 - Lx9 LINE L1 -646 6998 6933 5 714 410 282 104 30 chr9 16946136 16946271 -107129901 - B4A SINE B4 -117 175 31 5 714 245 361 94 24 chr9 16946678 16946848 -107129324 + LTR89 LTR ERVL? 264 445 -434 5 714 645 294 0 94 chr9 16946957 16947160 -107129012 - B3A SINE B2 -10 188 5 5 714 858 273 81 38 chr9 16947322 16947558 -107128614 + MTE2a LTR MaLR 3 248 -131 5 714 315 71 0 0 chr9 16949541 16949583 -107126589 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 714 242 95 24 0 chr9 16949588 16949630 -107126542 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 5 714 29 0 0 0 chr9 16950133 16950162 -107126010 + AT_rich Low_complexity Low_complexity 1 29 0 5 714 532 307 72 39 chr9 16950273 16950632 -107125540 + L1MA4 LINE L1 5560 5930 -370 5 714 248 272 24 12 chr9 16951654 16951736 -107124436 + MLT2B3 LTR ERVL 1 83 -471 5 714 3292 46 2 0 chr9 16951900 16952295 -107123877 + MTA_Mm LTR MaLR 1 396 0 5 714 219 120 37 74 chr9 16952674 16952728 -107123444 + T-rich Low_complexity Low_complexity 4 55 0 5 714 264 149 0 0 chr9 16954242 16954289 -107121883 + (T)n Simple_repeat Simple_repeat 1 47 0 5 714 5327 156 8 7 chr9 16954450 16955343 -107120829 - Lx3A LINE L1 -2 6979 6086 5 714 7024 110 0 29 chr9 16955344 16956413 -107119759 - L1_Mur1 LINE L1 -3 5883 4846 5 714 2123 243 95 83 chr9 16956413 16957276 -107118896 + RMER17B LTR ERVK 20 892 -66 5 714 2279 148 27 16 chr9 16957344 16957755 -107118417 - L1_Mur1 LINE L1 -2757 3129 2719 5 714 450 0 0 0 chr9 16957755 16957805 -107118367 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 714 2279 148 27 16 chr9 16957805 16957831 -107118341 - L1_Mur1 LINE L1 -3168 2718 2687 5 714 2507 272 26 39 chr9 16957824 16958714 -107117458 + L1VL4 LINE L1 264 1090 -5470 5 714 8958 108 31 18 chr9 16958713 16959059 -107117113 - L1_Mur1 LINE L1 -3183 2703 2348 5 714 270 0 0 0 chr9 16959059 16959089 -107117083 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 714 8958 113 22 19 chr9 16959089 16961016 -107115156 - L1_Mur1 LINE L1 -3539 2347 449 5 714 26 50 0 0 chr9 16961492 16961532 -107114640 + AT_rich Low_complexity Low_complexity 1 40 0 5 714 316 403 8 37 chr9 16961606 16961740 -107114432 + RSINE1 SINE B4 28 157 -8 5 714 374 204 11 0 chr9 16961764 16961857 -107114315 + GA-rich Low_complexity Low_complexity 3 96 0 5 714 333 353 25 51 chr9 16961967 16962125 -107114047 - RSINE1 SINE B4 -8 157 4 5 714 426 310 0 15 chr9 16964891 16965022 -107111150 + ID_B1 SINE B4 94 222 -2 5 714 2880 94 5 5 chr9 16965073 16965470 -107110702 + MTB LTR MaLR 4 400 0 5 714 3616 164 10 3 chr9 16965744 16966367 -107109805 + Lx2B LINE L1 6372 6998 -2 5 714 672 265 31 21 chr9 16966477 16966670 -107109502 + B3A SINE B2 3 197 -1 5 714 254 303 170 32 chr9 16966762 16967226 -107108946 + L1MDa LINE L1 1787 2314 -4319 5 714 360 249 150 9 chr9 16967363 16967590 -107108582 + L1MDa LINE L1 2506 2764 -3773 5 714 232 336 135 9 chr9 16967623 16967734 -107108438 + PB1 SINE Alu 1 125 -2 5 714 647 302 97 26 chr9 16967817 16968145 -107108027 + Lx8 LINE L1 7054 7411 -62 5 714 342 45 0 0 chr9 16968145 16968189 -107107983 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 714 647 302 97 26 chr9 16968189 16968210 -107107962 + Lx8 LINE L1 7412 7428 -45 5 714 226 191 133 41 chr9 16968204 16968302 -107107870 + Lx8 LINE L1 7358 7464 -9 5 714 1247 58 15 8 chr9 16969270 16969532 -107106640 + (TTTC)n Simple_repeat Simple_repeat 1 264 0 5 714 425 182 10 0 chr9 16969540 16969639 -107106533 + CT-rich Low_complexity Low_complexity 3 102 0 5 714 649 257 50 80 chr9 16969682 16969881 -107106291 - B3A SINE B2 -1 197 5 5 714 183 379 47 86 chr9 16970618 16970852 -107105320 - L2 LINE L2 -371 3048 2824 5 714 24 0 0 0 chr9 16971191 16971215 -107104957 + AT_rich Low_complexity Low_complexity 1 24 0 5 714 282 262 0 0 chr9 16971536 16971620 -107104552 - Lx9 LINE L1 -18 7626 7543 5 714 2309 220 53 11 chr9 16971622 16972164 -107104008 - Lx9 LINE L1 -216 7428 6864 5 714 3046 75 5 0 chr9 16973175 16973575 -107102597 + L1_Mus1 LINE L1 6166 6567 0 5 714 353 22 22 0 chr9 16973598 16973644 -107102528 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 714 282 164 33 0 chr9 16973647 16973708 -107102464 + Lx9 LINE L1 7581 7643 -1 5 714 5599 257 57 39 chr9 16973750 16975476 -107100696 - Lx7 LINE L1 -7 7689 5934 5 714 21 0 0 0 chr9 16975660 16975681 -107100491 + AT_rich Low_complexity Low_complexity 1 21 0 5 714 387 0 0 0 chr9 16975951 16975994 -107100178 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 714 337 289 87 40 chr9 16975997 16976170 -107100002 - B3A SINE B2 -16 182 2 5 714 332 234 70 39 chr9 16976305 16976434 -107099738 + Tigger6b DNA MER2_type 1388 1520 -77 5 714 454 330 84 76 chr9 16976698 16976960 -107099212 + B4A SINE B4 2 265 -27 5 714 227 302 145 8 chr9 16977345 16977462 -107098710 + B3 SINE B2 84 216 0 5 714 319 335 0 68 chr9 16978494 16978628 -107097544 - B1F SINE Alu -1 116 2 5 714 2429 198 24 70 chr9 16979070 16979695 -107096477 - L1_Mur3 LINE L1 -1739 4141 3555 5 714 6421 210 34 46 chr9 16979692 16980159 -107096013 + L1_Mur3 LINE L1 4143 4619 -1261 5 714 1604 187 67 61 chr9 16980159 16980535 -107095637 - ORR1C1 LTR MaLR 0 378 1 5 714 6421 210 34 46 chr9 16980535 16981253 -107094919 + L1_Mur3 LINE L1 4620 5287 -593 5 714 5449 34 6 3 chr9 16981253 16981909 -107094263 + L1Md_F2 LINE L1 5924 6581 -1 5 714 6421 210 34 46 chr9 16981909 16982474 -107093698 + L1_Mur3 LINE L1 5288 5874 -6 5 714 1063 77 13 0 chr9 16984481 16984636 -107091536 + (TAGA)n Simple_repeat Simple_repeat 2 158 0 5 714 1646 226 75 27 chr9 16984637 16985038 -107091134 - RMER10A LTR ERVL -22 420 1 5 714 1193 241 132 24 chr9 16985038 16985493 -107090679 + Lx7 LINE L1 7193 7696 0 5 714 917 267 82 43 chr9 16985688 16986040 -107090132 - ORR1D2 LTR MaLR -4 366 1 5 714 26 50 0 0 chr9 16989399 16989439 -107086733 + AT_rich Low_complexity Low_complexity 1 40 0 5 714 231 61 0 0 chr9 16989454 16989487 -107086685 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 714 1830 216 108 4 chr9 16989489 16989953 -107086219 - RMER5 LTR ERV1 -20 514 3 5 714 447 308 148 12 chr9 16989953 16990209 -107085963 - B4 SINE B4 -1 291 1 5 714 1667 226 74 20 chr9 16990443 16990835 -107085337 - MTC LTR MaLR -8 413 1 5 714 28 0 0 0 chr9 16991611 16991639 -107084533 + AT_rich Low_complexity Low_complexity 1 28 0 5 714 228 279 38 9 chr9 16992175 16992280 -107083892 - L1M1 LINE L1 -694 5609 5502 5 714 318 302 24 48 chr9 16993010 16993161 -107083011 + RMER20B LTR ERVK 16 161 -355 6 714 620 204 75 8 chr9 16995048 16995181 -107080991 + B1_Mur4 SINE Alu 9 150 0 6 714 292 338 94 26 chr9 16995264 16995498 -107080674 + Lx8 LINE L1 6912 7161 -312 6 714 467 0 35 0 chr9 16995762 16995820 -107080352 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 6 714 431 112 11 0 chr9 16995987 16996076 -107080096 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 6 714 870 292 44 54 chr9 16996736 16997033 -107079139 + Lx6 LINE L1 6594 6887 -573 6 714 1669 48 0 0 chr9 16997036 16997242 -107078930 + L1_Mus1 LINE L1 6361 6566 -1 6 714 631 228 181 30 chr9 16997327 16997625 -107078547 + MTC-int LTR MaLR 911 1253 -5 6 714 978 328 44 35 chr9 16997618 16997985 -107078187 + MTD LTR MaLR 48 417 -2 6 714 209 182 0 0 chr9 16998159 16998192 -107077980 + G-rich Low_complexity Low_complexity 5 37 0 6 714 586 118 20 0 chr9 16998197 16998299 -107077873 + (GA)n Simple_repeat Simple_repeat 1 104 0 6 714 763 149 21 21 chr9 16998517 16998661 -107077511 - B1_Mus1 SINE Alu -3 145 2 6 714 914 149 0 45 chr9 16998758 16998913 -107077259 + B1_Mur4 SINE Alu 1 148 -2 6 714 195 69 0 0 chr9 16998914 16998943 -107077229 + (A)n Simple_repeat Simple_repeat 1 29 0 6 714 405 39 0 0 chr9 16998945 16998996 -107077176 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 6 714 27 29 0 0 chr9 17000433 17000467 -107075705 + AT_rich Low_complexity Low_complexity 1 34 0 1 714 813 172 0 0 chr9 17000542 17000693 -107075479 + GA-rich Low_complexity Low_complexity 3 153 0 2 714 4462 26 15 2 chr9 17001063 17001603 -107074569 + L1Md_A LINE L1 359 905 -5819 3 714 225 0 0 0 chr9 17001603 17001628 -107074544 + (T)n Simple_repeat Simple_repeat 1 25 0 4 714 284 350 108 30 chr9 17001628 17001896 -107074276 - Charlie1b DNA MER1_type -183 340 52 5 714 227 257 55 41 chr9 17002100 17002173 -107073999 - ID4_ SINE ID -8 75 2 6 714 37547 7 0 0 chr9 17002230 17007199 -107068973 - L1Md_A LINE L1 0 6582 1613 7 714 37984 10 0 0 chr9 17007199 17011583 -107064589 + L1Md_A LINE L1 1203 5586 -297 8 714 8753 14 0 1 chr9 17011583 17012580 -107063592 + L1Md_A LINE L1 5587 6582 0 8 714 311 304 0 19 chr9 17013004 17013108 -107063064 + (TATATG)n Simple_repeat Simple_repeat 4 105 0 9 714 186 227 0 0 chr9 17013121 17013165 -107063007 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 714 181 358 49 0 chr9 17013521 17013602 -107062570 - MIR SINE MIR -106 162 77 1 714 569 144 0 9 chr9 17014020 17014125 -107062047 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 714 459 200 11 171 chr9 17014717 17014892 -107061280 + RLTR23 LTR ERV1 8 154 -276 1 714 399 41 0 0 chr9 17016051 17016100 -107060072 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 714 261 0 0 0 chr9 17016100 17016128 -107060044 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 714 1803 166 42 50 chr9 17016457 17016838 -107059334 + ORR1C1 LTR MaLR 1 378 0 1 714 812 95 0 25 chr9 17017755 17017874 -107058298 + B1_Mm SINE Alu 32 147 0 1 714 32 36 0 18 chr9 17017882 17017915 -107058257 + AT_rich Low_complexity Low_complexity 1 33 0 1 714 726 111 44 7 chr9 17017915 17018051 -107058121 + L1_Mus3 LINE L1 6498 6638 0 1 714 32 36 0 18 chr9 17018051 17018074 -107058098 + AT_rich Low_complexity Low_complexity 1 23 0 2 714 699 12 0 0 chr9 17019096 17019176 -107056996 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 714 1232 229 86 88 chr9 17019680 17020019 -107056153 - L1_Mur3 LINE L1 -177 5703 5351 2 714 864 171 7 0 chr9 17020019 17020165 -107056007 - B1_Mus1 SINE Alu 0 148 2 2 714 1232 229 86 88 chr9 17020165 17020289 -107055883 - L1_Mur3 LINE L1 -530 5350 5241 2 714 672 231 30 0 chr9 17020288 17020457 -107055715 + L1_Mur3 LINE L1 5700 5873 -7 2 714 2064 271 78 25 chr9 17020452 17021084 -107055088 + Lx6 LINE L1 6792 7456 -4 2 714 573 342 39 51 chr9 17021970 17022306 -107053866 - MLT1B LTR MaLR -55 335 4 2 714 12276 150 43 1 chr9 17023078 17026152 -107050020 + Lx LINE L1 3428 6641 -13 2 714 662 345 14 5 chr9 17026155 17026362 -107049810 - B4A SINE B4 -70 222 14 2 714 259 347 52 26 chr9 17026748 17026902 -107049270 - MER5A DNA MER1_type -3 186 29 2 714 212 326 101 22 chr9 17027217 17027355 -107048817 - MIRc SINE MIR -9 259 111 3 714 700 306 104 50 chr9 17027818 17028300 -107047872 + Tigger6a DNA MER2_type 151 658 -425 3 714 498 33 0 0 chr9 17028525 17028585 -107047587 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 714 342 98 0 0 chr9 17028588 17028639 -107047533 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 714 345 308 0 0 chr9 17028666 17028744 -107047428 - RSINE1 SINE B4 -37 128 51 3 714 432 0 0 0 chr9 17028774 17028822 -107047350 + (TTTCC)n Simple_repeat Simple_repeat 1 48 0 3 714 1335 72 0 0 chr9 17028822 17029002 -107047170 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 3 714 827 237 73 81 chr9 17029072 17029211 -107046961 - Lx7 LINE L1 0 7696 7553 3 714 521 42 28 0 chr9 17029211 17029282 -107046890 + (TAAAA)n Simple_repeat Simple_repeat 3 75 0 3 714 827 237 73 81 chr9 17029282 17029324 -107046848 - Lx7 LINE L1 -144 7552 7499 3 714 5318 141 50 17 chr9 17029324 17030252 -107045920 - RMER17B LTR ERVK 0 958 1 3 714 827 237 73 81 chr9 17030252 17030460 -107045712 - Lx7 LINE L1 -198 7498 7306 3 714 405 0 0 0 chr9 17030460 17030505 -107045667 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 714 827 237 73 81 chr9 17030505 17030521 -107045651 - Lx7 LINE L1 -391 7305 7293 3 714 300 241 108 102 chr9 17030538 17030574 -107045598 + MT2B2 LTR ERVL 121 157 -427 4 714 677 261 0 7 chr9 17030574 17030713 -107045459 + B1_Mur4 SINE Alu 3 140 -10 4 714 342 0 0 0 chr9 17030726 17030764 -107045408 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 714 1137 123 0 0 chr9 17030764 17030943 -107045229 + (CAAAG)n Simple_repeat Simple_repeat 1 179 0 4 714 626 227 84 7 chr9 17030977 17031132 -107045040 - Lx7 LINE L1 -442 7254 7088 3 714 2497 171 92 32 chr9 17031133 17031698 -107044474 + RLTR1D LTR ERV1 1 605 0 4 714 1808 257 64 8 chr9 17031702 17032189 -107043983 - Lx7 LINE L1 -612 7084 6571 3 714 1815 206 136 25 chr9 17032247 17032312 -107043860 - L1_Mur3 LINE L1 -4015 1865 1787 4 714 243 0 0 0 chr9 17032312 17032339 -107043833 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 714 1815 206 136 25 chr9 17032339 17032627 -107043545 - L1_Mur3 LINE L1 -4094 1786 1464 4 714 1727 212 80 0 chr9 17032627 17033013 -107043159 + MTC LTR MaLR 1 417 -4 4 714 2955 207 132 29 chr9 17033013 17033269 -107042903 - L1_Mur3 LINE L1 -4417 1463 1188 4 714 207 0 0 0 chr9 17033269 17033292 -107042880 + (TGAG)n Simple_repeat Simple_repeat 4 26 0 4 714 2955 222 70 94 chr9 17033292 17034249 -107041923 - L1_Mur3 LINE L1 -6541 1187 280 4 714 3362 153 25 124 chr9 17034443 17035220 -107040952 - RMER6A LTR ERVK 0 756 57 5 714 198 255 117 48 chr9 17035611 17035714 -107040458 - L3 LINE CR1 -2700 1789 1680 5 714 246 364 7 21 chr9 17036591 17036734 -107039438 + L2c LINE L2 3245 3385 -2 5 714 200 194 0 0 chr9 17037609 17037645 -107038527 + T-rich Low_complexity Low_complexity 1 36 0 5 714 307 214 11 11 chr9 17037684 17037774 -107038398 - Lx9 LINE L1 -22 7622 7533 5 714 423 0 0 0 chr9 17037789 17037836 -107038336 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 5 714 612 0 0 0 chr9 17039026 17039094 -107037078 + (TCC)n Simple_repeat Simple_repeat 1 68 0 5 89 2648 250 97 15 chr9 17039191 17039926 -107036246 - Lx5 LINE L1 -4 7046 6252 5 715 250 329 31 18 chr9 17039929 17040081 -107036091 + MIR SINE MIR 104 254 -14 5 715 1945 263 42 16 chr9 17040511 17041091 -107035081 - Lx6 LINE L1 -1 7459 6872 5 715 321 125 0 0 chr9 17041092 17041148 -107035024 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 715 1902 211 124 23 chr9 17041577 17042136 -107034036 - Lx6 LINE L1 -810 6886 6247 5 715 294 200 292 10 chr9 17042146 17042242 -107033930 + RLTR25A LTR ERVK 9 131 -897 6 715 330 132 0 0 chr9 17042244 17042297 -107033875 + (TAA)n Simple_repeat Simple_repeat 1 53 0 6 715 540 0 0 0 chr9 17042318 17042378 -107033794 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 715 3079 166 39 117 chr9 17042389 17042952 -107033220 + RLTR25A LTR ERVK 145 687 -416 6 715 567 0 0 0 chr9 17042952 17043015 -107033157 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 6 715 3079 166 39 117 chr9 17043015 17043084 -107033088 + RLTR25A LTR ERVK 688 756 -347 6 715 6594 47 19 0 chr9 17043084 17043914 -107032258 + L1Md_F3 LINE L1 5725 6570 -14 6 715 3079 179 45 131 chr9 17043914 17044108 -107032064 + RLTR25A LTR ERVK 683 852 -176 6 715 378 0 0 0 chr9 17044345 17044387 -107031785 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 6 715 576 275 127 63 chr9 17044446 17044698 -107031474 + RLTR25B LTR ERVK 761 1028 0 6 715 12192 225 42 31 chr9 17044698 17046305 -107029867 - Lx6 LINE L1 -1226 6234 4618 5 715 291 28 0 0 chr9 17046305 17046341 -107029831 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 715 12192 213 47 29 chr9 17046341 17048400 -107027772 - Lx6 LINE L1 -1263 4617 2506 5 715 283 197 40 5 chr9 17048399 17048485 -107027687 - L1_Mur3 LINE L1 -1716 4131 4046 6 715 743 336 44 55 chr9 17048501 17048936 -107027236 + Lx8 LINE L1 7035 7464 -9 7 715 25 51 0 0 chr9 17049244 17049283 -107026889 + AT_rich Low_complexity Low_complexity 1 39 0 7 715 273 29 0 0 chr9 17049880 17049914 -107026258 + (ATG)n Simple_repeat Simple_repeat 1 34 0 7 715 232 346 43 36 chr9 17049967 17050105 -107026067 - MLT1A1 LTR MaLR -1 466 328 7 715 2672 155 11 1 chr9 17050449 17050949 -107025223 + MYSERV6-int LTR ERVK 8476 8903 -56 7 715 295 291 195 19 chr9 17050952 17051152 -107025020 + RLTR12B LTR ERVK 3 256 -272 7 715 233 355 123 0 chr9 17051380 17051518 -107024654 - MLT1A1 LTR MaLR -184 224 70 7 715 2771 215 32 8 chr9 17051835 17052756 -107023416 - Lx7 LINE L1 -1468 6228 5282 7 715 4005 262 85 16 chr9 17052743 17053897 -107022275 + Lx6 LINE L1 6228 7460 0 7 715 35 54 0 0 chr9 17054033 17054089 -107022083 + AT_rich Low_complexity Low_complexity 1 56 0 7 715 357 62 0 0 chr9 17055115 17055163 -107021009 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 715 221 169 133 17 chr9 17055947 17056007 -107020165 - L2c LINE L2 -6 3381 3315 8 715 1287 203 41 37 chr9 17056561 17056832 -107019340 + Lx4A LINE L1 6784 7055 -3 8 715 532 331 15 44 chr9 17057047 17057249 -107018923 + B3A SINE B2 10 198 -18 8 715 300 127 0 0 chr9 17057267 17057322 -107018850 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 715 252 0 0 0 chr9 17058386 17058414 -107017758 + (T)n Simple_repeat Simple_repeat 1 28 0 8 715 779 196 7 0 chr9 17058649 17058787 -107017385 + B1_Mur4 SINE Alu 11 149 -1 8 715 524 318 42 14 chr9 17060802 17061016 -107015156 - MLT1B LTR MaLR -168 222 3 8 715 180 77 0 0 chr9 17062138 17062164 -107014008 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 715 22 0 0 0 chr9 17062191 17062213 -107013959 + AT_rich Low_complexity Low_complexity 1 22 0 8 715 222 211 0 34 chr9 17062267 17062326 -107013846 + A-rich Low_complexity Low_complexity 2 58 0 8 715 478 241 171 42 chr9 17062419 17062690 -107013482 + Lx7 LINE L1 7348 7690 -6 9 715 301 294 108 36 chr9 17062809 17062975 -107013197 - L1MEc LINE L1 -4944 1456 1279 9 715 516 76 0 0 chr9 17063057 17063123 -107013049 + Lx5 LINE L1 6444 6509 -541 9 715 358 334 80 81 chr9 17063123 17063414 -107012758 + ORR1E LTR MaLR 65 379 0 9 715 375 240 10 0 chr9 17064471 17064575 -107011597 - Lx9 LINE L1 -1 7643 7539 9 715 606 56 0 0 chr9 17064868 17064940 -107011232 + L1Md_F2 LINE L1 5515 5586 -297 9 715 8081 41 2 13 chr9 17064940 17065872 -107010300 + L1Md_F2 LINE L1 5587 6520 -62 9 715 3227 24 39 0 chr9 17065872 17066253 -107009919 - MTA_Mm LTR MaLR 0 396 1 9 715 9072 34 3 2 chr9 17066255 17067350 -107008822 - MTA_Mm-int LTR MaLR -2 1096 1 9 715 3245 21 39 0 chr9 17067350 17067731 -107008441 - MTA_Mm LTR MaLR 0 396 1 9 715 8081 41 2 13 chr9 17067731 17067775 -107008397 + L1Md_F2 LINE L1 6521 6558 -24 9 715 189 0 0 0 chr9 17067775 17067796 -107008376 + (TAA)n Simple_repeat Simple_repeat 1 21 0 9 715 8081 41 2 13 chr9 17067796 17067808 -107008364 + L1Md_F2 LINE L1 6559 6567 -15 9 715 313 259 35 26 chr9 17067808 17067850 -107008322 + L1M1 LINE L1 5616 5658 -642 9 715 22 35 0 0 chr9 17068097 17068126 -107008046 + AT_rich Low_complexity Low_complexity 1 29 0 9 715 372 77 0 0 chr9 17068828 17068880 -107007292 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 1 715 276 30 0 0 chr9 17068882 17068915 -107007257 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 715 252 336 8 0 chr9 17068915 17069046 -107007126 + (TG)n Simple_repeat Simple_repeat 2 133 0 1 715 778 305 119 8 chr9 17069049 17069310 -107006862 - B4A SINE B4 -2 290 1 1 715 21 36 0 0 chr9 17069890 17069918 -107006254 + AT_rich Low_complexity Low_complexity 1 28 0 1 715 607 156 15 7 chr9 17071268 17071377 -107004795 - ORR1B1 LTR MaLR -8 386 273 1 715 5166 181 35 22 chr9 17071401 17072001 -107004171 - Lx3C LINE L1 -341 6635 6044 1 715 510 61 0 0 chr9 17072001 17072067 -107004105 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 1 715 5166 181 31 19 chr9 17072067 17072606 -107003566 - Lx3C LINE L1 -933 6043 5485 1 715 2336 110 168 7 chr9 17072697 17073155 -107003017 + RLTR47_MM LTR ERV1 1 532 0 1 715 24 32 0 0 chr9 17073302 17073333 -107002839 + AT_rich Low_complexity Low_complexity 1 31 0 1 715 21 0 0 0 chr9 17073538 17073559 -107002613 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 360 0 0 0 chr9 17073626 17073666 -107002506 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 715 426 39 0 0 chr9 17073670 17073722 -107002450 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 715 354 23 0 0 chr9 17073722 17073764 -107002408 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 715 226 404 122 42 chr9 17073927 17074304 -107001868 + MamGypLTR3 LTR Gypsy 173 579 -260 1 715 405 0 0 0 chr9 17074482 17074527 -107001645 + (TAA)n Simple_repeat Simple_repeat 1 45 0 1 715 483 18 0 0 chr9 17075797 17075853 -107000319 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 715 603 0 0 0 chr9 17075853 17075919 -107000253 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 715 251 103 51 0 chr9 17075922 17075961 -107000211 + MT2B2 LTR ERVL 543 583 -1 1 715 774 0 0 0 chr9 17077526 17077612 -106998560 + (GGAAA)n Simple_repeat Simple_repeat 3 88 0 1 715 1825 141 24 50 chr9 17078172 17078509 -106997663 + ORR1A4 LTR MaLR 2 329 0 1 715 297 259 145 101 chr9 17079167 17079442 -106996730 + ORR1D2 LTR MaLR 63 372 -7 1 715 25 65 0 0 chr9 17079516 17079562 -106996610 + AT_rich Low_complexity Low_complexity 1 46 0 1 715 350 21 21 0 chr9 17080445 17080492 -106995680 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 715 22 56 0 0 chr9 17082800 17082836 -106993336 + AT_rich Low_complexity Low_complexity 1 36 0 1 715 1053 163 19 19 chr9 17082901 17083107 -106993065 - L1_Mus2 LINE L1 -4 6562 6357 1 715 785 273 49 16 chr9 17084863 17085109 -106991063 - Lx9 LINE L1 -290 7354 7101 1 715 393 196 21 21 chr9 17085112 17085206 -106990966 + Lx9 LINE L1 7393 7486 -158 1 715 435 92 0 0 chr9 17085215 17085280 -106990892 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 715 27 0 0 0 chr9 17085352 17085379 -106990793 + AT_rich Low_complexity Low_complexity 1 27 0 1 715 336 289 106 25 chr9 17085405 17085604 -106990568 + B3 SINE B2 2 216 0 1 715 823 147 0 19 chr9 17086354 17086514 -106989658 + GA-rich Low_complexity Low_complexity 4 160 0 1 715 431 353 82 50 chr9 17086520 17086702 -106989470 + B3 SINE B2 2 189 -27 1 715 676 293 149 35 chr9 17087096 17087411 -106988761 - MTEa LTR MaLR -4 375 25 1 715 282 354 60 34 chr9 17087278 17087427 -106988745 - MT2A LTR ERVL -380 153 1 1 715 1113 320 78 26 chr9 17087450 17088000 -106988172 - Lx6 LINE L1 -28 7432 6478 1 715 3681 207 10 17 chr9 17087999 17088771 -106987401 - L1_Mur3 LINE L1 -14 5866 5100 1 715 560 221 101 39 chr9 17088776 17088955 -106987217 + L1_Mur3 LINE L1 4884 5073 -804 1 715 190 0 67 0 chr9 17091226 17091256 -106984916 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 1 715 1068 97 23 6 chr9 17091260 17091436 -106984736 + (TTTTC)n Simple_repeat Simple_repeat 2 180 0 1 715 801 131 15 0 chr9 17091446 17091576 -106984596 - B1_Mus1 SINE Alu -9 139 8 1 715 2406 31 330 0 chr9 17091720 17092077 -106984095 + IAPLTR2_Mm LTR ERVK 1 475 0 1 715 871 76 56 0 chr9 17092192 17092336 -106983836 - L1_Mus3 LINE L1 -7 6631 6480 1 715 25 65 0 0 chr9 17093030 17093076 -106983096 + AT_rich Low_complexity Low_complexity 1 46 0 1 715 25 75 0 0 chr9 17093178 17093231 -106982941 + AT_rich Low_complexity Low_complexity 1 53 0 1 715 272 366 20 25 chr9 17093883 17094079 -106982093 + L3 LINE CR1 3462 3656 -833 1 715 812 118 22 36 chr9 17094307 17094666 -106981506 + CT-rich Low_complexity Low_complexity 1 354 0 1 715 322 240 48 24 chr9 17094680 17094804 -106981368 - Lx7 LINE L1 0 7696 7570 1 715 1084 199 59 28 chr9 17094783 17095073 -106981099 - L1_Mur3 LINE L1 -543 5337 5039 1 715 1245 283 47 93 chr9 17095058 17095678 -106980494 + Lx7 LINE L1 7106 7696 0 1 715 234 0 0 0 chr9 17095768 17095794 -106980378 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1 715 2399 194 25 59 chr9 17095796 17096355 -106979817 - Lx7 LINE L1 -173 7523 6984 1 715 1541 141 128 0 chr9 17096358 17096648 -106979524 - IAPEY3_LTR LTR ERVK -5 327 1 1 715 1892 166 18 6 chr9 17096648 17096976 -106979196 - Lx7 LINE L1 -707 6989 6658 1 715 475 169 0 11 chr9 17096952 17097042 -106979130 - Lx7 LINE L1 -1450 6246 6158 1 715 2877 43 73 5 chr9 17097057 17097428 -106978744 - MTA_Mm LTR MaLR 0 396 1 1 715 218 264 13 65 chr9 17097511 17097588 -106978584 + L2 LINE L2 1469 1541 -1878 1 715 254 79 0 0 chr9 17098247 17098285 -106977887 + L1_Mus1 LINE L1 5915 5952 -615 1 715 349 377 122 40 chr9 17099190 17099623 -106976549 + MLT1D LTR MaLR 29 497 -8 1 715 523 126 23 16 chr9 17099765 17099894 -106976278 + (TA)n Simple_repeat Simple_repeat 1 130 0 1 715 186 103 0 0 chr9 17100687 17100716 -106975456 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 715 1389 56 0 0 chr9 17100883 17101098 -106975074 + (TTCTCC)n Simple_repeat Simple_repeat 1 215 0 1 715 568 132 9 17 chr9 17101098 17101214 -106974958 + CT-rich Low_complexity Low_complexity 3 117 0 1 715 1539 48 5 0 chr9 17101319 17101507 -106974665 - L1Md_F3 LINE L1 -118 5765 5577 1 715 4573 19 0 0 chr9 17101506 17102030 -106974142 + L1Md_F3 LINE L1 5786 6309 -275 1 715 1408 40 0 0 chr9 17102019 17102192 -106973980 - L1_Mm LINE L1 -2362 3521 3349 1 715 8537 28 0 0 chr9 17102196 17103192 -106972980 + L1Md_T LINE L1 5587 6582 0 1 715 1077 88 0 0 chr9 17103195 17103354 -106972818 + MusHAL1 LINE L1 1251 1409 -1303 1 715 4680 81 16 2 chr9 17103354 17104047 -106972125 + L1_Mus2 LINE L1 5927 6566 0 1 715 2210 50 39 26 chr9 17104047 17104333 -106971839 + L1Md_F3 LINE L1 6299 6584 0 1 715 525 255 4 142 chr9 17105222 17105455 -106970717 - RLTR11A LTR ERVK 0 528 328 1 715 243 0 0 0 chr9 17105459 17105486 -106970686 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 715 423 0 0 0 chr9 17105486 17105532 -106970640 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 715 522 264 124 12 chr9 17105532 17105693 -106970479 - RLTR11A LTR ERVK -343 185 7 1 715 5201 105 30 0 chr9 17108698 17109438 -106966734 - L1_Mus4 LINE L1 -1 6635 5874 1 715 247 242 0 0 chr9 17109602 17109664 -106966508 + L1MA7 LINE L1 6187 6248 -43 1 715 234 170 0 0 chr9 17110281 17110362 -106965810 + (CAAAC)n Simple_repeat Simple_repeat 1 81 0 1 715 270 111 69 0 chr9 17110394 17110466 -106965706 + A-rich Low_complexity Low_complexity 2 78 0 1 715 2920 228 46 2 chr9 17110534 17111159 -106965013 + RMER1C Other Other 686 1338 -4 1 715 186 43 0 0 chr9 17112433 17112456 -106963716 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 1 715 268 143 20 0 chr9 17112462 17112511 -106963661 - Lx7 LINE L1 -6 7690 7641 1 715 381 43 0 0 chr9 17112572 17112619 -106963553 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 715 768 248 58 8 chr9 17112623 17112863 -106963309 - Lx7 LINE L1 -276 7420 7169 1 715 7145 222 54 20 chr9 17112860 17114984 -106961188 - L1_Mur3 LINE L1 -2466 3414 1219 1 715 6662 87 4 1 chr9 17114998 17115900 -106960272 - L1_Mus2 LINE L1 -1 6565 5661 1 715 29825 85 42 9 chr9 17116151 17121119 -106955053 + L1Md_F2 LINE L1 457 5586 -297 1 715 7534 64 14 0 chr9 17121120 17122101 -106954071 + L1Md_F2 LINE L1 5588 6582 0 1 715 365 395 13 0 chr9 17122118 17122275 -106953897 - B3A SINE B2 -13 185 27 1 715 229 261 21 99 chr9 17122375 17122617 -106953555 - RMER17D LTR ERVK -440 449 227 1 715 622 298 75 37 chr9 17122651 17122972 -106953200 - RMER17C-int LTR ERVK -8 3230 2898 1 715 561 217 0 9 chr9 17123353 17123460 -106952712 + LSU-rRNA_Hsa rRNA rRNA 4200 4305 -730 1 715 672 239 17 99 chr9 17123460 17123762 -106952410 - RLTR19-int LTR ERVK -2415 3722 3446 1 715 277 208 0 0 chr9 17123822 17123875 -106952297 - RLTR19-int LTR ERVK -2891 3246 3194 1 715 428 277 37 37 chr9 17124553 17124714 -106951458 + RSINE1 SINE B4 5 165 0 1 715 201 39 0 0 chr9 17124717 17124743 -106951429 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 715 761 58 10 0 chr9 17125036 17125139 -106951033 + (GA)n Simple_repeat Simple_repeat 2 105 0 1 715 253 237 73 31 chr9 17125287 17125383 -106950789 - MIRb SINE MIR -16 252 153 1 715 230 285 75 36 chr9 17125882 17126012 -106950160 + MLT1H LTR MaLR 431 567 -2 1 715 201 304 29 14 chr9 17126636 17126706 -106949466 + MIRb SINE MIR 60 130 -138 1 715 7628 112 5 2 chr9 17127278 17129015 -106947157 + L1_Mus3 LINE L1 4889 6631 -7 1 715 3955 96 7 1 chr9 17129500 17130313 -106945859 + Lx3_Mus LINE L1 5353 6171 -838 1 715 3656 165 43 62 chr9 17130334 17131140 -106945032 - L1_Mur2 LINE L1 0 5877 5087 1 715 378 114 0 0 chr9 17133598 17133668 -106942504 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 715 457 335 50 43 chr9 17134744 17135022 -106941150 + B4A SINE B4 1 280 -12 1 715 847 0 19 0 chr9 17135057 17135160 -106941012 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 715 2953 209 24 2 chr9 17136261 17136812 -106939360 + RMER19A LTR ERVK 175 737 0 1 715 316 190 0 0 chr9 17136812 17136867 -106939305 - ID2 SINE ID -27 56 2 1 715 2146 289 47 16 chr9 17136883 17137850 -106938322 + L1_Mur3 LINE L1 3565 4560 -1320 1 715 447 92 0 0 chr9 17137923 17137988 -106938184 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 715 243 196 20 0 chr9 17138033 17138084 -106938088 + L1M3 LINE L1 5851 5902 -266 1 715 576 0 0 0 chr9 17138244 17138308 -106937864 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 1 715 191 61 0 29 chr9 17138321 17138355 -106937817 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 2 715 270 0 0 0 chr9 17138783 17138813 -106937359 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 715 884 139 6 0 chr9 17138952 17139110 -106937062 + (TAG)n Simple_repeat Simple_repeat 1 159 0 2 715 270 341 23 68 chr9 17140071 17140203 -106935969 + PB1 SINE Alu 1 126 -1 2 715 275 262 12 0 chr9 17140283 17140363 -106935809 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 715 7283 201 40 12 chr9 17140363 17141766 -106934406 - Lx5 LINE L1 -787 6263 4811 2 715 432 0 0 0 chr9 17141766 17141814 -106934358 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 715 7283 194 42 14 chr9 17141814 17141945 -106934227 - Lx5 LINE L1 -1067 4810 4666 2 715 417 141 0 0 chr9 17141945 17142016 -106934156 + (CAT)n Simple_repeat Simple_repeat 2 72 0 2 715 7283 194 42 14 chr9 17142016 17142459 -106933713 - Lx5 LINE L1 -1212 4665 4219 2 715 534 359 16 11 chr9 17142765 17142948 -106933224 + B3A SINE B2 2 185 -13 2 715 235 207 0 47 chr9 17143018 17143104 -106933068 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 2 715 3098 38 0 0 chr9 17144016 17144388 -106931784 + L1Md_T LINE L1 6207 6578 -4 2 715 1142 55 7 0 chr9 17144915 17145061 -106931111 - B1_Mm SINE Alu 0 147 1 2 715 4072 131 2 11 chr9 17145072 17145704 -106930468 - Lx2 LINE L1 -1 6996 6371 2 715 1789 151 36 0 chr9 17145704 17145805 -106930367 + L1_Mur2 LINE L1 4516 4621 -1256 2 715 315 0 0 0 chr9 17145805 17145840 -106930332 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 715 1789 151 36 0 chr9 17145840 17146069 -106930103 + L1_Mur2 LINE L1 4622 4857 -1020 2 715 539 335 98 51 chr9 17146305 17146620 -106929552 + MER21B LTR ERV1 494 823 -40 2 715 869 209 121 0 chr9 17146910 17147116 -106929056 - RCHARR1 DNA MER1_type -205 769 539 2 715 512 294 65 0 chr9 17147173 17147357 -106928815 - B3 SINE B2 -17 199 4 2 715 338 152 21 21 chr9 17147568 17147662 -106928510 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 2 715 823 211 0 0 chr9 17149772 17149914 -106926258 + B1_Mus1 SINE Alu 1 142 -6 2 715 189 74 0 0 chr9 17149915 17149942 -106926230 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2 715 29 0 0 0 chr9 17150050 17150079 -106926093 + AT_rich Low_complexity Low_complexity 1 29 0 2 715 29 47 0 0 chr9 17150709 17150752 -106925420 + AT_rich Low_complexity Low_complexity 1 43 0 2 715 338 236 0 60 chr9 17150904 17151021 -106925151 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 2 715 441 0 0 0 chr9 17151024 17151073 -106925099 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 715 911 262 49 33 chr9 17151076 17151380 -106924792 + RLTR16 LTR ERVK 8 316 -189 2 715 1206 232 77 10 chr9 17153708 17154100 -106922072 + L1_Mur2 LINE L1 904 1253 -5833 2 715 470 17 0 17 chr9 17154100 17154160 -106922012 + (TAA)n Simple_repeat Simple_repeat 2 60 0 2 715 1206 199 93 0 chr9 17154160 17154430 -106921742 + L1_Mur2 LINE L1 1254 1553 -4324 2 715 3978 166 14 16 chr9 17154759 17155452 -106920720 + RLTR17 LTR ERVK 1 692 0 2 715 616 292 42 34 chr9 17155481 17155743 -106920429 - RLTR15 LTR ERVK -95 264 1 2 715 2695 67 0 3 chr9 17156009 17156355 -106919817 + L1Md_F2 LINE L1 5242 5586 -297 2 715 7447 81 1 4 chr9 17156355 17157354 -106918818 + L1Md_F2 LINE L1 5587 6582 0 2 715 2362 236 19 66 chr9 17157904 17158403 -106917769 + L1_Mur2 LINE L1 1560 2047 -3830 2 715 387 0 0 0 chr9 17158403 17158446 -106917726 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 715 2362 236 19 66 chr9 17158446 17158485 -106917687 + L1_Mur2 LINE L1 2048 2079 -3798 2 715 4687 162 55 0 chr9 17158485 17159308 -106916864 + Lx4A LINE L1 6190 7057 -1 2 715 2362 236 19 66 chr9 17159308 17159544 -106916628 + L1_Mur2 LINE L1 2080 2299 -3578 2 715 364 181 0 0 chr9 17159541 17159613 -106916559 - L1_Mur2 LINE L1 -2270 3610 3539 2 715 5420 204 67 30 chr9 17159616 17161086 -106915086 + L1_Mur2 LINE L1 3611 5134 -743 2 715 2909 187 62 37 chr9 17161086 17161679 -106914493 + RMER20B LTR ERVK 14 621 -6 2 715 288 146 0 0 chr9 17161692 17161740 -106914432 + L1_Mur2 LINE L1 5133 5180 -697 2 715 1390 310 72 26 chr9 17161806 17162429 -106913743 + Lx6 LINE L1 6455 7444 -16 2 715 441 0 0 0 chr9 17162527 17162576 -106913596 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 715 201 298 0 0 chr9 17164123 17164180 -106911992 + GA-rich Low_complexity Low_complexity 2 58 0 2 715 336 250 157 19 chr9 17164434 17164593 -106911579 - L1MB8 LINE L1 -193 5985 5805 2 715 8037 40 3 2 chr9 17164782 17165815 -106910357 - L1Md_F2 LINE L1 -3 6579 5545 2 715 494 316 31 0 chr9 17166013 17166206 -106909966 - L1MB8 LINE L1 -409 5769 5571 2 715 357 295 102 21 chr9 17166708 17166992 -106909180 - L1MB8 LINE L1 -869 5277 4971 2 715 1699 122 32 0 chr9 17168576 17168854 -106907318 - Lx LINE L1 -1 6653 6367 2 715 28 0 0 0 chr9 17170322 17170350 -106905822 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 5183 197 37 68 chr9 17170489 17171203 -106904969 - L1_Mur1 LINE L1 -517 5369 4634 2 716 183 42 0 0 chr9 17171203 17171227 -106904945 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 716 5183 197 37 68 chr9 17171227 17171986 -106904186 - L1_Mur1 LINE L1 -1253 4633 3943 2 716 7918 164 12 2 chr9 17171976 17173594 -106902578 + Lx2B LINE L1 5369 7000 0 2 716 2976 259 120 33 chr9 17173642 17174842 -106901330 + Lx9 LINE L1 6306 7609 -35 2 716 13353 123 30 13 chr9 17174895 17178030 -106898142 + L1VL2 LINE L1 62 3251 -364 2 716 389 197 120 53 chr9 17178034 17178133 -106898039 + RMER17A-int LTR ERVK 36 135 -1593 2 716 869 28 0 9 chr9 17178133 17178242 -106897930 + (TC)n Simple_repeat Simple_repeat 1 108 0 2 716 389 197 120 53 chr9 17178242 17178292 -106897880 + RMER17A-int LTR ERVK 136 194 -1534 2 716 255 125 0 0 chr9 17178534 17178574 -106897598 + RMER17A-int LTR ERVK 708 747 -981 2 716 241 0 59 39 chr9 17178620 17178671 -106897501 + (CAAAAA)n Simple_repeat Simple_repeat 1 52 0 2 716 929 159 9 37 chr9 17178723 17178939 -106897233 + RMER17A-int LTR ERVK 782 991 -737 2 716 3700 139 52 41 chr9 17178975 17179068 -106897104 + RMER17A-int LTR ERVK 982 1077 -651 2 716 3159 56 5 0 chr9 17179068 17179462 -106896710 - MTA_Mm LTR MaLR 0 396 1 2 716 3700 139 52 41 chr9 17179462 17180105 -106896067 + RMER17A-int LTR ERVK 1078 1726 -2 2 716 4730 166 74 5 chr9 17180107 17181000 -106895172 + RMER17B LTR ERVK 1 955 -3 2 716 10556 121 68 44 chr9 17181002 17181363 -106894809 + L1_Mus3 LINE L1 3565 3950 -2688 2 716 875 139 0 0 chr9 17181363 17181485 -106894687 + B1_Mus1 SINE Alu 2 123 -25 2 716 10556 121 68 44 chr9 17181485 17183994 -106892178 + L1_Mus3 LINE L1 3951 6638 0 2 716 221 0 35 0 chr9 17184133 17184162 -106892010 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 716 1997 236 92 9 chr9 17185274 17185928 -106890244 + Lx9 LINE L1 6935 7642 -2 2 716 416 312 57 0 chr9 17185939 17186080 -106890092 + RSINE1 SINE B4 4 152 -13 2 716 23060 105 12 5 chr9 17186538 17190662 -106885510 - L1Md_A LINE L1 -1081 4802 644 2 716 4984 155 4 63 chr9 17190664 17191744 -106884428 - L1_Mm LINE L1 -2721 3162 2147 2 716 2132 123 15 9 chr9 17191744 17192079 -106884093 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 716 7864 48 31 14 chr9 17192081 17193140 -106883032 - IAPEz-int LTR ERVK -2 6479 5403 2 716 18933 59 34 21 chr9 17193121 17195748 -106880424 - IAPEz-int LTR ERVK -3811 2670 8 2 716 2132 123 15 9 chr9 17195748 17196083 -106880089 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 716 377 39 0 0 chr9 17196083 17196134 -106880038 - L1_Mm LINE L1 -3731 2152 2102 2 716 189 111 55 18 chr9 17196134 17196189 -106879983 + A-rich Low_complexity Low_complexity 1 57 0 2 716 1532 157 0 3 chr9 17196205 17196511 -106879661 - L1_Mm LINE L1 -3778 2105 1801 2 716 27 29 0 0 chr9 17198101 17198135 -106878037 + AT_rich Low_complexity Low_complexity 1 34 0 2 716 201 238 0 0 chr9 17199003 17199045 -106877127 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 716 432 0 0 0 chr9 17199912 17199960 -106876212 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 716 190 365 94 28 chr9 17200184 17200359 -106875813 - MIRc SINE MIR -42 226 29 2 716 808 211 37 21 chr9 17201458 17201647 -106874525 - URR1A DNA MER1_type 0 226 35 2 716 732 60 17 8 chr9 17201838 17201956 -106874216 - L1_Mus3 LINE L1 -5 6633 6515 2 716 359 61 0 0 chr9 17201963 17202012 -106874160 + L1_Mus3 LINE L1 6277 6325 -313 2 716 3044 77 5 0 chr9 17202115 17202545 -106873627 - Lx3_Mus LINE L1 -482 6527 6096 2 716 1330 111 57 18 chr9 17202553 17202782 -106873390 + Lx3_Mus LINE L1 6561 6798 -211 2 716 6773 44 1 2 chr9 17202782 17203621 -106872551 + L1Md_F3 LINE L1 5747 6584 0 2 716 22 0 0 0 chr9 17203801 17203823 -106872349 + AT_rich Low_complexity Low_complexity 1 22 0 2 716 3504 38 19 0 chr9 17203999 17204421 -106871751 - L1Md_A LINE L1 0 6582 6153 2 716 3127 29 0 0 chr9 17204421 17204807 -106871365 + L1_Mm LINE L1 4456 4841 -1042 2 716 34 24 0 0 chr9 17204953 17204994 -106871178 + AT_rich Low_complexity Low_complexity 1 41 0 2 716 1065 210 20 8 chr9 17204994 17205313 -106870859 - L1_Mur2 LINE L1 -5766 1216 894 2 716 380 126 22 22 chr9 17206029 17206118 -106870054 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 716 270 237 79 0 chr9 17206336 17206412 -106869760 + B4 SINE B4 3 84 -208 2 716 38587 15 1 7 chr9 17206532 17212709 -106863463 - L1Md_A LINE L1 0 6582 451 2 716 404 377 58 27 chr9 17212709 17212897 -106863275 + B4 SINE B4 99 292 0 2 716 845 170 0 7 chr9 17212899 17213047 -106863125 - RLTR26 LTR ERVK 0 642 496 2 716 3056 179 18 31 chr9 17213038 17213590 -106862582 - RLTR26 LTR ERVK -97 545 1 2 716 27 49 0 0 chr9 17215202 17215243 -106860929 + AT_rich Low_complexity Low_complexity 1 41 0 2 716 6914 142 42 7 chr9 17215706 17216775 -106859397 - Lx9 LINE L1 -1806 5838 4736 2 716 415 45 15 15 chr9 17216775 17216842 -106859330 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 716 6914 137 36 5 chr9 17216842 17217049 -106859123 - Lx9 LINE L1 -1148 4735 4533 2 716 4779 102 112 0 chr9 17217049 17217782 -106858390 + L1_Mus3 LINE L1 5818 6632 -6 2 716 789 320 45 33 chr9 17219235 17219746 -106856426 + L1MA4A LINE L1 5388 5904 -399 2 716 531 0 0 0 chr9 17219774 17219833 -106856339 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2 716 238 355 0 0 chr9 17219856 17219949 -106856223 + (TATATG)n Simple_repeat Simple_repeat 1 93 0 2 716 243 200 0 59 chr9 17219980 17220081 -106856091 + (TATATG)n Simple_repeat Simple_repeat 4 98 0 2 716 239 263 52 13 chr9 17220673 17220750 -106855422 - MIRc SINE MIR -19 249 170 2 716 231 114 0 0 chr9 17220944 17220988 -106855184 + (T)n Simple_repeat Simple_repeat 1 44 0 2 716 652 170 19 0 chr9 17220996 17221102 -106855070 + B1_Mur3 SINE Alu 10 117 -32 2 716 330 26 0 0 chr9 17221102 17221141 -106855031 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 716 270 256 33 0 chr9 17221200 17221290 -106854882 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 2 716 541 168 0 0 chr9 17221479 17221580 -106854592 - L1_Mus4 LINE L1 -118 6518 6418 2 716 1307 152 0 0 chr9 17221581 17221785 -106854387 - RMER6D LTR ERVK -516 204 1 2 716 402 279 47 64 chr9 17222673 17222693 -106853479 - B2_Mm2 SINE B2 -24 171 152 2 716 504 0 0 0 chr9 17222693 17222749 -106853423 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 716 444 19 0 0 chr9 17222749 17222801 -106853371 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 716 613 265 20 14 chr9 17222801 17222951 -106853221 - B3A SINE B2 -46 152 3 2 716 8101 158 39 8 chr9 17223134 17224808 -106851364 - Lx2B LINE L1 -2 6998 5296 2 716 796 186 51 0 chr9 17224808 17224985 -106851187 - Lx2 LINE L1 -2 6995 6810 2 716 5919 199 59 24 chr9 17224985 17225576 -106850596 - Lx2B LINE L1 -591 5295 4694 2 716 3618 68 6 0 chr9 17225576 17226048 -106850124 + L1_Mus1 LINE L1 6093 6567 0 2 716 5919 199 59 24 chr9 17226048 17226185 -106849987 - Lx2B LINE L1 -1193 4693 4518 2 716 3395 253 60 30 chr9 17226185 17227140 -106849032 + Lx5 LINE L1 6068 7050 0 2 716 419 328 101 0 chr9 17227539 17227658 -106848514 + RSINE1 SINE B4 3 133 -32 2 716 513 32 0 0 chr9 17227690 17227753 -106848419 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 716 329 333 16 8 chr9 17228194 17228318 -106847854 + (TG)n Simple_repeat Simple_repeat 2 126 0 3 716 3666 16 121 0 chr9 17229556 17229996 -106846176 - MT2_Mm LTR ERVL 0 493 1 3 716 3278 51 2 0 chr9 17230361 17230756 -106845416 - MTA_Mm LTR MaLR 0 396 1 3 716 827 288 68 6 chr9 17231491 17231802 -106844370 - MLT1A0 LTR MaLR -10 355 26 3 716 203 0 37 0 chr9 17233005 17233032 -106843140 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 3 716 287 279 93 19 chr9 17233042 17233203 -106842969 + L1M3 LINE L1 2473 2645 -3495 3 716 227 164 71 26 chr9 17233260 17233373 -106842799 + (TA)n Simple_repeat Simple_repeat 1 118 0 3 716 242 147 80 27 chr9 17233444 17233556 -106842616 + (TA)n Simple_repeat Simple_repeat 1 118 0 3 716 24 32 0 0 chr9 17233779 17233810 -106842362 + AT_rich Low_complexity Low_complexity 1 31 0 3 716 255 221 0 50 chr9 17233938 17234057 -106842115 + GA-rich Low_complexity Low_complexity 3 115 0 3 716 448 278 21 83 chr9 17234125 17234317 -106841855 - Lx7 LINE L1 -389 7307 7128 3 716 714 300 70 22 chr9 17234316 17234589 -106841583 - Lx7 LINE L1 -944 6752 6467 3 716 1008 166 91 19 chr9 17235166 17235375 -106840797 + RMER1C Other Other 1110 1333 -9 3 716 24 0 0 0 chr9 17235421 17235445 -106840727 + AT_rich Low_complexity Low_complexity 1 24 0 3 716 249 57 0 0 chr9 17235890 17235925 -106840247 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 716 828 225 25 34 chr9 17237200 17237461 -106838711 - RMER19B LTR ERVK 0 902 489 3 716 278 132 19 0 chr9 17238966 17239019 -106837153 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 716 272 305 35 35 chr9 17239093 17239178 -106836994 + ID_B1 SINE B4 50 134 -90 3 716 297 273 130 10 chr9 17239129 17239229 -106836943 + PB1D10 SINE Alu 5 116 -1 3 716 3757 30 5 0 chr9 17239518 17239952 -106836220 + RLTR10C LTR ERVK 1 436 0 3 716 231 338 110 61 chr9 17240004 17240477 -106835695 + MER63C DNA AcHobo 385 880 -50 3 716 2370 204 30 38 chr9 17242940 17243330 -106832842 + Lx2B LINE L1 6480 6881 -119 3 716 2222 126 129 0 chr9 17243330 17243702 -106832470 + RLTR9B2 LTR ERVK 1 420 0 3 716 2370 204 30 38 chr9 17243702 17243836 -106832336 + Lx2B LINE L1 6882 7000 0 3 716 422 175 87 5 chr9 17243933 17244078 -106832094 - L1MC4 LINE L1 -646 7396 7223 3 716 2274 66 122 11 chr9 17244361 17244712 -106831460 + RLTR10 LTR ERVK 1 390 0 3 716 255 318 19 0 chr9 17245026 17245133 -106831039 + MLT2C1 LTR ERVL 14 122 -275 3 716 437 349 58 11 chr9 17245324 17245498 -106830674 - MER2 DNA MER2_type -11 334 153 3 716 504 306 9 81 chr9 17245760 17245970 -106830202 - B3A SINE B2 -2 196 2 3 716 830 275 24 12 chr9 17248529 17248783 -106827389 - Lx6 LINE L1 -4 7456 7200 3 716 1735 290 62 76 chr9 17248790 17249575 -106826597 - Lx6 LINE L1 -1025 6435 5662 3 716 225 108 0 0 chr9 17249700 17249737 -106826435 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 716 464 333 38 19 chr9 17249869 17250028 -106826144 - ID_B1 SINE B4 0 224 63 3 716 261 75 0 0 chr9 17251388 17251428 -106824744 + (CAA)n Simple_repeat Simple_repeat 3 42 0 3 716 1112 310 104 59 chr9 17252877 17253046 -106823126 + RMER15-int LTR ERVL 4181 4356 -643 3 716 1887 127 16 3 chr9 17253046 17253354 -106822818 + L1_Mus2 LINE L1 6240 6551 -15 3 716 234 0 0 0 chr9 17253359 17253385 -106822787 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3 716 1112 310 104 59 chr9 17253385 17253966 -106822206 + RMER15-int LTR ERVL 4357 4971 -28 3 716 297 0 0 0 chr9 17254269 17254302 -106821870 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 716 290 45 23 0 chr9 17254302 17254345 -106821827 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 716 1001 111 7 0 chr9 17254726 17254870 -106821302 + B1_Mus1 SINE Alu 1 145 -3 3 716 419 0 0 19 chr9 17254879 17254931 -106821241 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 3 716 3003 12 0 0 chr9 17255997 17256334 -106819838 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 716 192 327 71 26 chr9 17257106 17257219 -106818953 + MIR3 SINE MIR 66 183 -25 3 716 244 306 0 0 chr9 17259293 17259355 -106816817 + CT-rich Low_complexity Low_complexity 4 65 0 3 716 1531 318 63 66 chr9 17259618 17260504 -106815668 - Lx6 LINE L1 -4 7456 6207 3 716 3408 217 29 12 chr9 17260495 17261256 -106814916 - L1_Mur2 LINE L1 -163 5714 4941 3 716 1258 185 8 8 chr9 17261254 17261499 -106814673 + L1_Mur2 LINE L1 4703 4947 -933 3 716 222 62 0 0 chr9 17262419 17262451 -106813721 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 3 716 857 237 9 19 chr9 17262487 17262698 -106813474 - Lx7 LINE L1 -362 7334 7126 3 716 1123 139 0 36 chr9 17263331 17263525 -106812647 - B2_Mm2 SINE B2 -7 188 2 3 716 730 273 234 29 chr9 17264228 17264612 -106811560 + RMER20B LTR ERVK 129 591 -36 3 716 442 206 10 274 chr9 17264938 17265139 -106811033 - B1_Mur4 SINE Alu 0 150 3 3 716 217 119 48 0 chr9 17265425 17265467 -106810705 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 716 193 296 69 14 chr9 17265477 17265549 -106810623 + L2a LINE L2 3348 3423 -3 3 716 383 317 76 79 chr9 17265766 17266014 -106810158 - MTEa LTR MaLR -122 257 16 3 716 378 328 38 32 chr9 17266054 17266171 -106810001 - MTEa-int LTR MaLR -25 1555 1442 3 716 2306 72 119 11 chr9 17266171 17266523 -106809649 - RLTR10 LTR ERVK 0 390 1 3 716 378 328 38 32 chr9 17266523 17266591 -106809581 - MTEa-int LTR MaLR -139 1441 1370 3 716 448 351 48 57 chr9 17266683 17266997 -106809175 - MTEa-int LTR MaLR -600 980 670 3 716 657 349 106 19 chr9 17267207 17267578 -106808594 - MTEa-int LTR MaLR -1195 385 2 3 716 13990 16 0 0 chr9 17268257 17270591 -106805581 - L1Md_T LINE L1 0 6582 4249 3 716 22 0 0 0 chr9 17271374 17271396 -106804776 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 249 335 8 8 chr9 17271685 17271826 -106804346 - L1M2 LINE L1 -451 5849 5709 3 716 1044 42 0 47 chr9 17271826 17271976 -106804196 + L1Md_F3 LINE L1 6430 6572 -12 3 716 38 0 0 0 chr9 17271976 17272014 -106804158 + AT_rich Low_complexity Low_complexity 1 38 0 3 716 316 316 81 16 chr9 17272019 17272229 -106803943 - L1M2 LINE L1 -591 5700 5477 3 716 3411 217 87 9 chr9 17272226 17273020 -106803152 - Lx5 LINE L1 -4 7046 6191 3 716 1084 136 28 3 chr9 17273034 17273234 -106802938 + Lx3C LINE L1 5695 5939 -245 3 716 313 239 0 0 chr9 17273513 17273580 -106802592 - RLTR42-int LTR ERVK -3659 1863 1797 3 716 367 221 88 14 chr9 17273689 17273837 -106802335 - RLTR42-int LTR ERVK -3742 1780 1562 3 716 1086 162 5 25 chr9 17277262 17277458 -106798714 + B2_Mm2 SINE B2 1 192 -3 3 716 1054 64 17 23 chr9 17277692 17277867 -106798305 + (TCTCCC)n Simple_repeat Simple_repeat 4 177 0 3 716 321 279 0 12 chr9 17277867 17277947 -106798225 + CT-rich Low_complexity Low_complexity 2 80 0 3 716 201 94 0 0 chr9 17277967 17277999 -106798173 + (TTCTCC)n Simple_repeat Simple_repeat 3 34 0 3 716 5628 31 12 1 chr9 17278526 17279201 -106796971 + L1Md_F3 LINE L1 5901 6582 -2 3 716 366 42 0 0 chr9 17279314 17279362 -106796810 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 716 5585 211 38 13 chr9 17279573 17280814 -106795358 - Lx2B LINE L1 -8 6992 5721 3 716 391 287 0 73 chr9 17281406 17281530 -106794642 + PB1D10 SINE Alu 3 117 0 3 716 355 252 9 0 chr9 17282003 17282118 -106794054 - Lx9 LINE L1 -1 7643 7528 3 716 220 292 0 0 chr9 17283667 17283715 -106792457 - MIRm SINE MIR -34 242 195 3 716 783 298 105 12 chr9 17285261 17285604 -106790568 + MTEa LTR MaLR 3 377 -2 3 716 1641 243 27 42 chr9 17286011 17286415 -106789757 + MTD LTR MaLR 10 407 -12 3 716 1992 273 162 102 chr9 17286444 17287611 -106788561 + MTD-int LTR MaLR 22 1258 0 3 716 1457 264 19 15 chr9 17287615 17288027 -106788145 + MTD LTR MaLR 5 418 -1 3 716 230 400 54 9 chr9 17288314 17288425 -106787747 + 7SK RNA RNA 34 149 -182 3 716 22 0 0 0 chr9 17289205 17289227 -106786945 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 669 98 0 0 chr9 17291052 17291164 -106785008 + (TC)n Simple_repeat Simple_repeat 1 112 0 3 716 7363 84 4 8 chr9 17292184 17293871 -106782301 - L1_Mus2 LINE L1 -3 6563 4883 3 716 342 274 137 0 chr9 17293892 17293987 -106782185 + RSINE1 SINE B4 3 110 -55 3 716 1881 161 29 6 chr9 17294527 17294876 -106781296 - Lx LINE L1 -3 6651 6295 3 716 1123 151 27 0 chr9 17294876 17295062 -106781110 + Lx LINE L1 6098 6288 -366 3 716 23 54 0 0 chr9 17297070 17297107 -106779065 + AT_rich Low_complexity Low_complexity 1 37 0 3 716 229 91 0 83 chr9 17297535 17297595 -106778577 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 3 716 293 344 11 32 chr9 17297977 17298070 -106778102 - RSINE1 SINE B4 -48 117 27 3 716 242 262 49 8 chr9 17299370 17299493 -106776679 + Lx8 LINE L1 7337 7464 -9 3 716 21 36 0 0 chr9 17299499 17299527 -106776645 + AT_rich Low_complexity Low_complexity 1 28 0 3 716 466 328 93 17 chr9 17299744 17300324 -106775848 + L1MA6 LINE L1 5386 6007 -293 3 716 549 317 16 27 chr9 17300439 17300624 -106775548 + B3 SINE B2 15 197 -19 3 716 32 26 0 0 chr9 17300627 17300666 -106775506 + AT_rich Low_complexity Low_complexity 1 39 0 3 89 2717 184 32 18 chr9 17301209 17301762 -106774410 + Lx LINE L1 6092 6652 -2 3 717 554 41 14 0 chr9 17301985 17302058 -106774114 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 3 717 239 242 59 20 chr9 17302070 17302171 -106774001 - Lx9 LINE L1 -20 7624 7520 3 717 970 79 0 24 chr9 17302389 17302558 -106773614 + (CAGAGA)n Simple_repeat Simple_repeat 4 168 0 3 717 1692 101 8 19 chr9 17303456 17303719 -106772453 + L1_Mus3 LINE L1 6377 6636 -2 3 717 338 74 19 0 chr9 17304216 17304270 -106771902 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 717 237 33 0 0 chr9 17304270 17304299 -106771873 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 717 279 54 0 0 chr9 17305583 17305620 -106770552 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 717 374 0 22 0 chr9 17305679 17305725 -106770447 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 717 195 139 0 0 chr9 17305729 17305765 -106770407 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 717 180 0 0 0 chr9 17306521 17306541 -106769631 + (T)n Simple_repeat Simple_repeat 1 20 0 3 717 1762 53 0 9 chr9 17306550 17306777 -106769395 - L1Md_F3 LINE L1 -13 6571 6347 3 717 719 116 8 0 chr9 17307266 17307387 -106768785 + (TA)n Simple_repeat Simple_repeat 1 122 0 3 717 3674 198 42 28 chr9 17307637 17308007 -106768165 + L1_Mur2 LINE L1 551 942 -6144 3 717 253 43 21 42 chr9 17308007 17308055 -106768117 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 717 3674 181 41 22 chr9 17308055 17308537 -106767635 + L1_Mur2 LINE L1 943 1414 -4463 3 717 13048 142 48 21 chr9 17308528 17309646 -106766526 + L1_Mur2 LINE L1 2262 3384 -2493 3 717 216 86 0 0 chr9 17309646 17309681 -106766491 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 717 1081 80 0 0 chr9 17309681 17309818 -106766354 - B1_Mus2 SINE Alu -9 138 2 4 717 13048 142 48 21 chr9 17309818 17311196 -106764976 + L1_Mur2 LINE L1 3385 4824 -1053 3 717 224 30 0 29 chr9 17311200 17311234 -106764938 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 4 717 233 95 0 23 chr9 17311234 17311277 -106764895 + L1_Mur2 LINE L1 4821 4862 -1015 3 717 3316 202 40 31 chr9 17311247 17311991 -106764181 + Lx4B LINE L1 6296 7046 -12 4 717 402 21 0 0 chr9 17311991 17312038 -106764134 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 717 450 0 0 0 chr9 17312231 17312281 -106763891 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 717 812 182 0 0 chr9 17312289 17312415 -106763757 - B1_Mur4 SINE Alu -11 139 14 4 717 482 259 71 43 chr9 17312415 17312430 -106763742 - ID_B1 SINE B4 -11 213 69 4 717 2665 255 84 8 chr9 17312435 17313140 -106763032 + RMER1C Other Other 585 1342 0 4 717 738 258 35 87 chr9 17313373 17313683 -106762489 + RLTRETN_Mm LTR ERVK 29 322 0 4 717 620 85 93 9 chr9 17313683 17313767 -106762405 - B1_Mus2 SINE Alu -54 93 1 4 717 430 200 0 34 chr9 17313688 17313776 -106762396 - MT2B LTR ERVL -361 240 156 4 717 996 83 0 0 chr9 17313900 17314044 -106762128 + (CA)n Simple_repeat Simple_repeat 2 145 0 4 717 238 286 52 52 chr9 17314103 17314199 -106761973 - Lx8 LINE L1 -207 7266 7171 4 717 24 0 0 0 chr9 17314333 17314357 -106761815 + AT_rich Low_complexity Low_complexity 1 24 0 4 717 2357 250 36 2 chr9 17314367 17314900 -106761272 - Lx6 LINE L1 -4 7456 6906 4 717 1506 264 26 31 chr9 17316527 17316942 -106759230 + Lx6 LINE L1 7018 7430 -30 4 717 22 0 0 0 chr9 17316942 17316964 -106759208 + AT_rich Low_complexity Low_complexity 1 22 0 4 717 5405 207 27 20 chr9 17317263 17318880 -106757292 + Lx4B LINE L1 841 2457 -3420 4 717 1645 172 4 0 chr9 17318887 17319166 -106757006 + MT2B LTR ERVL 317 596 -5 4 717 1342 203 10 0 chr9 17319166 17319461 -106756711 + Lx4B LINE L1 2589 2886 -2991 4 717 619 268 39 43 chr9 17319509 17319763 -106756409 + L1_Mus1 LINE L1 215 467 -6149 4 717 22208 108 10 11 chr9 17319769 17323972 -106752200 + L1_Mus1 LINE L1 2369 6567 0 4 717 14526 202 23 14 chr9 17323983 17328028 -106748144 + Lx4B LINE L1 2861 6979 -21 4 717 183 129 0 0 chr9 17328050 17328081 -106748091 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 717 180 0 0 0 chr9 17329586 17329606 -106746566 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 717 367 342 18 73 chr9 17329609 17329773 -106746399 - RSINE1 SINE B4 -9 156 2 4 717 283 320 68 0 chr9 17330098 17330201 -106745971 - PB1D7 SINE Alu -9 111 2 4 717 522 31 0 0 chr9 17330272 17330336 -106745836 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 717 552 278 133 31 chr9 17330338 17330594 -106745578 - B4A SINE B4 -10 282 1 4 717 986 71 21 14 chr9 17331194 17331337 -106744835 + B1_Mus1 SINE Alu 4 147 -1 4 717 216 135 0 0 chr9 17331338 17331375 -106744797 + (A)n Simple_repeat Simple_repeat 1 37 0 4 717 3501 70 33 0 chr9 17331412 17331872 -106744300 - MT2C_Mm LTR ERVL 0 475 1 4 717 213 211 0 0 chr9 17332872 17332924 -106743248 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 717 507 256 72 72 chr9 17333137 17333318 -106742854 + B3A SINE B2 3 183 -15 4 717 300 53 0 0 chr9 17333371 17333409 -106742763 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 717 7324 85 2 4 chr9 17333409 17334455 -106741717 - L1Md_F2 LINE L1 -14 6568 5525 4 717 18654 85 13 32 chr9 17334429 17336871 -106739301 - L1Md_F2 LINE L1 -1890 3993 1607 4 717 1859 56 0 0 chr9 17336871 17337102 -106739070 - L1Md_T LINE L1 0 6582 6352 4 717 18654 107 30 26 chr9 17337102 17338307 -106737865 - L1Md_F2 LINE L1 -4277 1606 388 4 717 325 313 69 24 chr9 17339268 17339556 -106736616 + L1M5 LINE L1 4386 4686 -1460 4 717 481 295 32 13 chr9 17339956 17340114 -106736058 - MTD LTR MaLR -256 163 3 4 717 419 331 63 31 chr9 17340886 17341045 -106735127 - B3A SINE B2 -1 197 34 4 717 341 117 17 0 chr9 17341376 17341436 -106734736 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 717 410 305 149 26 chr9 17341713 17341982 -106734190 + Helitron1Na_Mam RC Helitron 1 302 -760 4 717 965 187 6 6 chr9 17342065 17342242 -106733930 - RLTR23 LTR ERV1 -1 429 253 4 717 756 295 14 48 chr9 17343165 17343460 -106732712 + Lx7 LINE L1 7024 7308 -388 4 717 1237 118 11 0 chr9 17344201 17344379 -106731793 + B2_Mm1t SINE B2 2 181 -12 4 717 7063 81 26 7 chr9 17344379 17345443 -106730729 + L1_Mus2 LINE L1 5481 6565 -1 4 717 309 370 36 7 chr9 17345789 17345928 -106730244 + MER2B DNA MER2_type 191 333 -3 4 717 920 240 29 9 chr9 17345984 17346194 -106729978 - B3 SINE B2 0 216 3 4 717 396 298 23 46 chr9 17346529 17346659 -106729513 + B4A SINE B4 166 292 0 4 717 733 250 92 5 chr9 17346812 17346997 -106729175 + ORR1D1 LTR MaLR 1 201 -173 4 717 22 0 0 0 chr9 17347306 17347328 -106728844 + AT_rich Low_complexity Low_complexity 1 22 0 4 717 666 231 33 0 chr9 17349297 17349418 -106726754 + B1_Mus1 SINE Alu 1 125 -23 4 717 462 36 0 0 chr9 17349638 17349694 -106726478 + (TAG)n Simple_repeat Simple_repeat 3 58 0 4 717 9181 88 9 0 chr9 17350566 17352594 -106723578 + L1_Mus1 LINE L1 4528 6567 0 4 717 324 0 0 0 chr9 17354123 17354159 -106722013 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 717 382 378 81 50 chr9 17354208 17354467 -106721705 - B4 SINE B4 -16 276 10 4 717 2203 126 45 24 chr9 17355048 17355429 -106720743 + Lx LINE L1 6260 6648 -6 4 717 252 143 0 0 chr9 17355465 17355507 -106720665 + (A)n Simple_repeat Simple_repeat 1 42 0 4 717 285 29 0 0 chr9 17355855 17355889 -106720283 + (TA)n Simple_repeat Simple_repeat 1 34 0 4 717 26 50 0 0 chr9 17356137 17356177 -106719995 + AT_rich Low_complexity Low_complexity 1 40 0 4 717 328 273 22 11 chr9 17356861 17356950 -106719222 + B4 SINE B4 11 100 -192 4 717 289 95 0 31 chr9 17358679 17358744 -106717428 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 717 6904 84 19 1 chr9 17358972 17359905 -106716267 - L1_Mus2 LINE L1 -1 6565 5616 4 717 1006 126 14 0 chr9 17360012 17360155 -106716017 + B1_Mm SINE Alu 2 146 -1 4 717 2196 230 57 24 chr9 17360172 17360362 -106715810 - Lx9 LINE L1 -20 7624 7429 4 717 2325 194 52 2 chr9 17360362 17360450 -106715722 - RLTR16 LTR ERVK 0 505 416 4 717 468 0 0 0 chr9 17360450 17360502 -106715670 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 717 2325 194 52 2 chr9 17360502 17360894 -106715278 - RLTR16 LTR ERVK -90 415 2 4 717 2196 230 57 24 chr9 17360894 17361366 -106714806 - Lx9 LINE L1 -216 7428 6940 4 717 677 225 106 13 chr9 17361456 17361640 -106714532 + MTC LTR MaLR 12 217 -202 4 717 1289 152 4 9 chr9 17361642 17361860 -106714312 + RLTR31_Mm LTR ERVK 178 394 -167 4 717 3576 145 141 33 chr9 17361860 17362589 -106713583 + RLTR13C2 LTR ERVK 1 808 0 4 717 566 240 173 22 chr9 17362617 17362796 -106713376 + RLTR17 LTR ERVK 487 692 0 4 717 1176 250 75 19 chr9 17362796 17363054 -106713118 + MTC LTR MaLR 140 418 -3 4 717 335 78 0 19 chr9 17363054 17363106 -106713066 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 4 717 498 86 0 0 chr9 17363104 17363185 -106712987 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 4 717 534 264 64 0 chr9 17363384 17363524 -106712648 + ID_B1 SINE B4 76 224 0 4 717 320 323 59 59 chr9 17363563 17363767 -106712405 + L1M2 LINE L1 3018 3221 -2922 4 717 183 42 0 0 chr9 17364250 17364274 -106711898 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 717 475 174 167 43 chr9 17364274 17364412 -106711760 - Lx4B LINE L1 -830 6228 6074 4 717 354 115 15 62 chr9 17364419 17364484 -106711688 - RLTR14 LTR ERV1 -117 265 204 4 717 1207 158 80 13 chr9 17364558 17364795 -106711377 - RLTR14-int LTR ERV1 -990 4327 4075 4 717 2097 203 69 102 chr9 17364800 17365409 -106710763 - RLTR14-int LTR ERV1 -4217 1100 512 4 717 989 241 26 35 chr9 17365405 17365637 -106710535 - RLTR14-int LTR ERV1 -5087 230 1 4 717 2161 173 14 0 chr9 17365640 17365992 -106710180 - RLTR14 LTR ERV1 -3 379 23 4 717 315 258 21 99 chr9 17366075 17366217 -106709955 + L1M2 LINE L1 4051 4181 -1962 4 717 393 39 0 0 chr9 17366268 17366319 -106709853 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 717 704 298 121 28 chr9 17366722 17367475 -106708697 + L1M2 LINE L1 4362 5184 -959 4 717 393 58 0 0 chr9 17367478 17367530 -106708642 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 717 486 290 86 54 chr9 17367578 17367985 -106708187 + L1M2 LINE L1 5279 5701 -590 4 717 1219 288 165 18 chr9 17368068 17368626 -106707546 + Lx8 LINE L1 6809 7448 -25 4 717 311 202 46 92 chr9 17368627 17368736 -106707436 + Lx4B LINE L1 6936 7039 -19 4 717 180 0 0 0 chr9 17368737 17368757 -106707415 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 4 717 239 316 38 0 chr9 17368795 17368874 -106707298 + L1M2 LINE L1 5823 5904 -396 4 717 1136 55 14 0 chr9 17369081 17369226 -106706946 - B1_Mus1 SINE Alu 0 148 2 4 717 299 273 49 35 chr9 17369371 17369515 -106706657 + L1M4 LINE L1 78 223 -6319 4 717 421 16 49 0 chr9 17369732 17369793 -106706379 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 717 2287 119 53 0 chr9 17370453 17370832 -106705340 + L1VL4 LINE L1 530 928 -5374 4 717 1469 176 7 0 chr9 17370832 17371104 -106705068 + Lx2B LINE L1 6725 6998 -2 4 717 208 70 0 44 chr9 17371105 17371150 -106705022 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 4 717 1158 201 153 0 chr9 17371950 17372264 -106703908 + Lx9 LINE L1 7275 7636 -8 4 717 285 210 0 0 chr9 17372925 17372987 -106703185 + (TATG)n Simple_repeat Simple_repeat 2 63 0 4 717 4536 103 48 85 chr9 17374696 17375224 -106700948 + MusHAL1 LINE L1 1 563 -2791 4 717 1046 98 7 0 chr9 17375224 17375367 -106700805 + B1_Mus1 SINE Alu 5 148 0 4 717 4536 103 48 85 chr9 17375367 17375410 -106700762 + MusHAL1 LINE L1 564 564 -2790 4 717 189 0 0 0 chr9 17375410 17375431 -106700741 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 717 16155 93 48 25 chr9 17375431 17376962 -106699210 + MusHAL1 LINE L1 564 2127 -1226 4 717 540 0 0 0 chr9 17376962 17377022 -106699150 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 717 16155 92 48 21 chr9 17377022 17378219 -106697953 + MusHAL1 LINE L1 2128 3349 -4 4 717 261 0 0 0 chr9 17379149 17379178 -106696994 + (ATATG)n Simple_repeat Simple_repeat 2 30 0 4 717 388 339 78 0 chr9 17379222 17379337 -106696835 - RSINE1 SINE B4 -31 134 11 4 717 233 204 0 0 chr9 17380638 17380687 -106695485 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 717 223 191 0 0 chr9 17380690 17380732 -106695440 + T-rich Low_complexity Low_complexity 1 42 0 4 717 4440 166 154 8 chr9 17380938 17381896 -106694276 + L1_Mur2 LINE L1 4152 5249 -628 4 717 223 146 0 35 chr9 17384107 17384164 -106692008 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 717 251 28 0 27 chr9 17384289 17384326 -106691846 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 717 8225 176 11 5 chr9 17385755 17387504 -106688668 - Lx4B LINE L1 -51 7007 5237 5 717 5408 25 0 0 chr9 17387795 17388427 -106687745 + L1Md_F2 LINE L1 4955 5586 -297 5 717 7975 48 1 5 chr9 17388428 17389426 -106686746 + L1Md_F2 LINE L1 5588 6581 -1 5 717 442 200 183 0 chr9 17389631 17389746 -106686426 - Lx9 LINE L1 -211 7433 7298 5 717 893 249 18 0 chr9 17389738 17389955 -106686217 + Lx9 LINE L1 6871 7091 -553 5 717 275 0 0 28 chr9 17389987 17390023 -106686149 + (CAT)n Simple_repeat Simple_repeat 2 36 0 5 717 580 230 29 66 chr9 17390023 17390265 -106685907 - Lx2B LINE L1 -23 6977 6745 5 717 845 208 0 12 chr9 17390393 17390554 -106685618 - Lx2B LINE L1 -246 6754 6596 5 717 551 147 0 8 chr9 17393041 17393158 -106683014 + GA-rich Low_complexity Low_complexity 1 116 0 5 717 209 264 0 0 chr9 17393175 17393228 -106682944 + GA-rich Low_complexity Low_complexity 2 54 0 5 717 3974 102 10 18 chr9 17393328 17393928 -106682244 - L1_Mus2 LINE L1 0 6566 5972 5 717 194 259 80 104 chr9 17394869 17394994 -106681178 - L2 LINE L2 -770 2649 2528 5 717 284 116 136 23 chr9 17395744 17395832 -106680340 - Lx3_Mus LINE L1 0 7009 6912 5 717 2174 115 13 3 chr9 17395843 17396157 -106680015 + Lx3_Mus LINE L1 6555 6871 -138 5 717 522 0 0 0 chr9 17396387 17396445 -106679727 + (CTA)n Simple_repeat Simple_repeat 2 59 0 5 717 23 33 0 0 chr9 17397264 17397294 -106678878 + AT_rich Low_complexity Low_complexity 1 30 0 5 717 3803 163 69 7 chr9 17398670 17398776 -106677396 + Lx LINE L1 5109 5214 -669 5 717 459 0 0 0 chr9 17398776 17398827 -106677345 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 5 717 7212 125 23 6 chr9 17398827 17400223 -106675949 + Lx LINE L1 5215 6654 0 5 717 28 0 0 0 chr9 17400223 17400251 -106675921 + AT_rich Low_complexity Low_complexity 1 28 0 5 717 28 0 0 0 chr9 17401248 17401276 -106674896 + AT_rich Low_complexity Low_complexity 1 28 0 5 717 533 224 78 47 chr9 17401758 17401950 -106674222 + Lx9 LINE L1 7445 7642 -2 5 717 1118 77 0 0 chr9 17402588 17402731 -106673441 + B1_Mus1 SINE Alu 1 143 -5 5 717 666 0 0 0 chr9 17402735 17402809 -106673363 + (GGA)n Simple_repeat Simple_repeat 3 76 0 5 717 27 0 0 0 chr9 17403198 17403225 -106672947 + AT_rich Low_complexity Low_complexity 1 27 0 5 717 235 295 0 0 chr9 17403399 17403460 -106672712 - L1MC LINE L1 -2229 5653 5593 5 717 3888 100 22 2 chr9 17404451 17405004 -106671168 + Lx3_Mus LINE L1 6446 7009 0 5 717 424 245 32 11 chr9 17405029 17405124 -106671048 + PB1D7 SINE Alu 19 115 -5 5 717 236 254 37 73 chr9 17405837 17405973 -106670199 + Lx9 LINE L1 7506 7636 -8 5 717 29 60 0 0 chr9 17405973 17406023 -106670149 + AT_rich Low_complexity Low_complexity 1 50 0 5 717 786 103 145 0 chr9 17406025 17406142 -106670030 + B1_Mm SINE Alu 2 135 -12 5 717 279 0 0 0 chr9 17406143 17406174 -106669998 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 717 4456 33 0 0 chr9 17406191 17406710 -106669462 + L1Md_T LINE L1 6062 6580 -2 5 717 282 265 75 50 chr9 17406972 17407114 -106669058 - Lx7 LINE L1 -22 7674 7530 5 717 270 0 0 0 chr9 17407114 17407144 -106669028 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 717 282 265 75 50 chr9 17407144 17407160 -106669012 - Lx7 LINE L1 -167 7529 7512 5 717 1719 282 89 79 chr9 17407163 17407330 -106668842 + L1Md_F2 LINE L1 217 379 -6259 5 717 3072 51 3 5 chr9 17407330 17407722 -106668450 + L1Md_F2 LINE L1 6192 6582 0 5 717 33069 97 10 10 chr9 17407722 17413177 -106662995 + L1Md_F2 LINE L1 380 5841 -42 5 717 453 91 13 0 chr9 17413177 17413254 -106662918 + L1Md_F2 LINE L1 6505 6582 0 5 717 282 333 38 0 chr9 17414406 17414511 -106661661 + PB1D7 SINE Alu 12 120 0 5 717 495 287 178 30 chr9 17417202 17417471 -106658701 - Lx8 LINE L1 -3 7470 7162 5 717 256 314 43 65 chr9 17417471 17417655 -106658517 - RLTR25B LTR ERVK 0 1028 849 5 717 323 268 13 65 chr9 17417655 17417975 -106658197 + CT-rich Low_complexity Low_complexity 1 303 0 5 717 203 319 11 11 chr9 17417915 17418010 -106658162 + T-rich Low_complexity Low_complexity 2 96 0 5 717 322 335 42 93 chr9 17418288 17418502 -106657670 - RLTR25B LTR ERVK -821 207 5 5 717 330 87 0 0 chr9 17418659 17418705 -106657467 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 5 717 7100 84 13 8 chr9 17418720 17419149 -106657023 - L1_Mus2 LINE L1 0 6566 6130 5 717 2780 150 75 106 chr9 17419149 17419318 -106656854 - RMER17A LTR ERVK 0 751 596 5 717 203 0 0 36 chr9 17419318 17419346 -106656826 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 5 717 2780 150 75 106 chr9 17419346 17419951 -106656221 - RMER17A LTR ERVK -156 595 3 5 717 7100 84 13 8 chr9 17419951 17420495 -106655677 - L1_Mus2 LINE L1 -437 6129 5588 5 717 1126 164 0 5 chr9 17420515 17420724 -106655448 - L1_Mus2 LINE L1 -566 5317 5110 5 717 1683 249 33 79 chr9 17421005 17421514 -106654658 - RLTR18B LTR ERVK -26 486 1 5 717 1626 197 37 23 chr9 17422152 17422500 -106653672 - ORR1B1 LTR MaLR -3 391 39 5 717 213 332 123 55 chr9 17422805 17423041 -106653131 - MIRc SINE MIR -1 267 16 5 717 24 32 0 0 chr9 17423811 17423842 -106652330 + AT_rich Low_complexity Low_complexity 1 31 0 5 717 301 319 0 63 chr9 17424462 17424589 -106651583 + ID_B1 SINE B4 103 221 -3 5 717 231 365 35 12 chr9 17424592 17424678 -106651494 + RSINE1 SINE B4 52 139 -26 5 717 360 0 0 0 chr9 17424689 17424729 -106651443 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 717 6902 82 6 8 chr9 17425088 17425745 -106650427 + L1_Mus1 LINE L1 5638 6296 -271 5 717 2283 115 5 75 chr9 17425745 17426131 -106650041 - RLTR10D LTR ERVK 0 359 1 5 717 6902 82 6 8 chr9 17426131 17426404 -106649768 + L1_Mus1 LINE L1 6297 6567 0 5 717 210 283 46 83 chr9 17427109 17427217 -106648955 + PB1D10 SINE Alu 10 113 -4 5 717 360 0 0 0 chr9 17427491 17427531 -106648641 + (CAA)n Simple_repeat Simple_repeat 2 41 0 5 717 276 30 0 0 chr9 17427531 17427564 -106648608 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 717 357 244 220 23 chr9 17427629 17427843 -106648329 + L1MC3 LINE L1 6936 7191 -594 5 717 24 0 0 0 chr9 17428606 17428630 -106647542 + AT_rich Low_complexity Low_complexity 1 24 0 5 717 399 41 0 0 chr9 17428984 17429033 -106647139 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 717 602 240 20 7 chr9 17429276 17429427 -106646745 - Lx6 LINE L1 0 7460 7308 5 717 10902 144 31 7 chr9 17429427 17432103 -106644069 + Lx LINE L1 3907 6650 -4 5 717 183 162 0 0 chr9 17432114 17432151 -106644021 + A-rich Low_complexity Low_complexity 2 38 0 5 89 7393 211 71 23 chr9 17432155 17435248 -106640924 - Lx6 LINE L1 -145 7315 4055 5 718 4640 52 3 0 chr9 17435254 17435831 -106640341 - L1Md_F2 LINE L1 -12 6570 5992 5 718 1447 164 15 8 chr9 17436168 17436432 -106639740 + L1VL1 LINE L1 1 266 -6156 5 718 569 152 0 11 chr9 17436432 17436525 -106639647 + L1Md_F LINE L1 383 474 -6045 5 718 3375 22 15 7 chr9 17436538 17436946 -106639226 + IAPLTR2a LTR ERVK 1 411 0 5 718 909 121 114 6 chr9 17436947 17437114 -106639058 + IAPEz-int LTR ERVK 9 193 -6288 5 718 234 327 0 0 chr9 17437114 17437169 -106639003 + RLTR27 LTR ERVK 221 275 -34 5 718 3262 68 31 16 chr9 17437169 17437732 -106638440 + IAPEz-int LTR ERVK 168 662 -5819 5 718 922 76 0 0 chr9 17437732 17437851 -106638321 + IAPEz-int LTR ERVK 1359 1477 -5004 5 718 1904 87 8 0 chr9 17437846 17438098 -106638074 + IAPEz-int LTR ERVK 2244 2497 -5183 5 718 13353 73 27 8 chr9 17438097 17439887 -106636285 + IAPEz-int LTR ERVK 4656 6479 -2 5 718 3249 27 25 0 chr9 17439889 17440290 -106635882 + IAPLTR2a LTR ERVK 1 411 0 5 718 25416 95 5 18 chr9 17440294 17445333 -106630839 + L1Md_F2 LINE L1 585 5585 -298 5 718 7384 79 5 2 chr9 17445334 17446315 -106629857 + L1Md_F2 LINE L1 5587 6570 -12 5 718 362 378 67 52 chr9 17446327 17446595 -106629577 + B4A SINE B4 5 276 -16 5 718 276 77 0 0 chr9 17446648 17446687 -106629485 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 718 844 193 82 35 chr9 17447812 17448128 -106628044 - RMER17C LTR ERVK 0 410 80 5 718 1412 44 0 6 chr9 17448137 17448318 -106627854 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 718 755 120 16 0 chr9 17448328 17448453 -106627719 + (GGAGA)n Simple_repeat Simple_repeat 4 130 0 5 718 828 212 8 70 chr9 17448454 17448513 -106627659 - RMER17C LTR ERVK -164 246 190 5 718 1198 85 0 11 chr9 17448513 17448692 -106627480 + (GAGAA)n Simple_repeat Simple_repeat 3 179 0 5 718 828 212 8 70 chr9 17448692 17448891 -106627281 - RMER17C LTR ERVK -221 189 4 5 718 207 0 0 0 chr9 17449425 17449448 -106626724 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 718 550 212 106 0 chr9 17449456 17449588 -106626584 - B1_Mur4 SINE Alu 0 150 5 5 718 349 341 43 79 chr9 17450222 17450362 -106625810 - ID_B1 SINE B4 -2 222 88 5 718 249 339 70 18 chr9 17451242 17451356 -106624816 - MER2B DNA MER2_type -57 279 160 5 718 1826 259 86 121 chr9 17451436 17452395 -106623777 - RMER17B LTR ERVK -33 925 1 5 718 2787 150 15 29 chr9 17453092 17453666 -106622506 - Lx3B LINE L1 -7 6974 6216 5 718 3606 67 0 0 chr9 17454556 17455018 -106621154 + RLTR13B1 LTR ERVK 432 893 0 5 718 4162 97 17 167 chr9 17455079 17455722 -106620450 + RMER17D2 LTR ERVK 1 536 -273 5 718 1564 73 0 0 chr9 17455722 17455962 -106620210 - L1_Mus1 LINE L1 0 6567 6358 5 718 4162 97 17 167 chr9 17455962 17456269 -106619903 + RMER17D2 LTR ERVK 537 808 -1 5 718 316 328 104 69 chr9 17457586 17457730 -106618442 - RSINE1 SINE B4 0 165 17 5 718 412 268 108 23 chr9 17458517 17458647 -106617525 + MLT1D LTR MaLR 345 485 -20 5 718 34 42 0 0 chr9 17458823 17458871 -106617301 + AT_rich Low_complexity Low_complexity 1 48 0 5 718 326 265 0 0 chr9 17459666 17459734 -106616438 - RMER2 LTR ERV1 -250 317 250 5 718 567 229 114 0 chr9 17459756 17459887 -106616285 - RMER2 LTR ERV1 -421 146 1 5 718 191 152 51 0 chr9 17459986 17460065 -106616107 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 5 718 1325 147 88 4 chr9 17460680 17460731 -106615441 - RMER10B LTR ERVL -116 282 216 5 718 447 19 0 0 chr9 17460731 17460783 -106615389 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 718 1325 147 88 4 chr9 17460783 17460991 -106615181 - RMER10B LTR ERVL -183 215 2 5 718 229 271 45 36 chr9 17461662 17461773 -106614399 - L1MC LINE L1 -2289 3857 3746 5 718 396 0 0 0 chr9 17462822 17462866 -106613306 + (TTA)n Simple_repeat Simple_repeat 2 45 0 5 718 1000 218 132 11 chr9 17463560 17463825 -106612347 + RLTR41 LTR ERV1 116 412 -34 5 718 340 309 57 75 chr9 17466278 17466723 -106609449 + L1MA6 LINE L1 5602 6014 -286 5 718 451 206 103 0 chr9 17467983 17468090 -106608082 - B3 SINE B2 -10 206 89 5 718 202 281 91 68 chr9 17468583 17468671 -106607501 - MIRc SINE MIR -79 189 100 5 718 810 263 53 97 chr9 17469258 17469557 -106606615 + MTEa LTR MaLR 1 286 -93 5 718 277 308 63 13 chr9 17470374 17470453 -106605719 - MLT1D LTR MaLR -135 370 288 5 718 1384 263 5 50 chr9 17470470 17470854 -106605318 + Lx7 LINE L1 6981 7347 -349 5 718 228 182 0 0 chr9 17470858 17470902 -106605270 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 718 594 256 0 0 chr9 17471007 17471132 -106605040 + B1_Mus1 SINE Alu 2 126 -22 6 718 630 182 6 13 chr9 17471239 17471395 -106604777 + GA-rich Low_complexity Low_complexity 2 156 0 6 718 23 0 0 0 chr9 17471703 17471726 -106604446 + AT_rich Low_complexity Low_complexity 1 23 0 6 718 786 171 26 0 chr9 17472247 17472399 -106603773 - RLTR11A2 LTR ERVK -30 497 342 6 718 771 269 36 36 chr9 17472424 17472675 -106603497 - RMER13B LTR ERVK -27 881 631 6 718 1511 199 137 25 chr9 17472654 17473093 -106603079 - RMER17B LTR ERVK -470 488 1 6 718 1224 246 26 30 chr9 17473183 17473522 -106602650 - RLTR11A2 LTR ERVK -188 339 2 6 718 337 207 37 4 chr9 17473970 17474071 -106602101 + Lx9 LINE L1 5776 5916 -1728 6 718 403 286 5 92 chr9 17474081 17474277 -106601895 + Lx9 LINE L1 6965 7143 -501 6 718 285 298 38 9 chr9 17475276 17475381 -106600791 + Charlie5 DNA MER1_type 11 118 -2506 6 718 26 64 0 0 chr9 17475412 17475459 -106600713 + AT_rich Low_complexity Low_complexity 1 47 0 6 718 745 326 36 39 chr9 17476401 17476682 -106599490 - B4A SINE B4 -4 288 9 6 718 378 0 0 0 chr9 17476697 17476739 -106599433 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 6 718 2115 173 109 40 chr9 17477183 17477597 -106598575 + RLTR12B LTR ERVK 1 456 -72 6 718 441 0 0 0 chr9 17477597 17477646 -106598526 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 6 718 2115 173 109 40 chr9 17477646 17477725 -106598447 + RLTR12B LTR ERVK 457 528 0 6 718 22 56 0 0 chr9 17478974 17479010 -106597162 + AT_rich Low_complexity Low_complexity 1 36 0 6 718 1622 210 3 27 chr9 17481118 17481455 -106594717 + ORR1A4 LTR MaLR 1 329 0 6 718 763 174 19 6 chr9 17482487 17482643 -106593529 - Lx4A LINE L1 -2 7056 6899 6 718 23 54 0 0 chr9 17484845 17484882 -106591290 + AT_rich Low_complexity Low_complexity 1 37 0 6 718 448 220 52 67 chr9 17484894 17485059 -106591113 + B1_Mus2 SINE Alu 2 147 -1 6 718 615 309 184 18 chr9 17485437 17485762 -106590410 + MTEb LTR MaLR 1 379 0 6 718 203 79 26 0 chr9 17485924 17485962 -106590210 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 6 718 273 254 62 16 chr9 17488272 17488336 -106587836 - RSINE1 SINE B4 -96 69 3 6 718 430 299 58 58 chr9 17488362 17488550 -106587622 + MLT1D LTR MaLR 311 498 -7 6 718 976 303 106 8 chr9 17491000 17491107 -106585065 + MTD LTR MaLR 1 113 -306 6 718 321 26 0 0 chr9 17491107 17491145 -106585027 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 718 976 303 106 8 chr9 17491145 17491406 -106584766 + MTD LTR MaLR 114 403 -16 6 718 4456 162 8 0 chr9 17491964 17492718 -106583454 + Lx3C LINE L1 4842 5601 -285 6 718 5472 111 91 6 chr9 17492719 17493625 -106582547 + L1Md_F2 LINE L1 5600 6582 0 6 718 2002 186 169 10 chr9 17493625 17494453 -106581719 + Lx3C LINE L1 6003 6962 -14 6 718 273 29 0 0 chr9 17494453 17494487 -106581685 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 6 718 628 311 0 7 chr9 17494494 17494643 -106581529 + B1_Mur2 SINE Alu 1 148 -1 6 718 2811 92 57 61 chr9 17495210 17495687 -106580485 - IAPLTR2_Mm LTR ERVK 0 475 1 6 718 353 127 0 18 chr9 17495808 17495864 -106580308 - RLTR9E LTR ERVK -354 55 1 6 718 714 224 8 0 chr9 17496493 17496627 -106579545 + B1_Mus1 SINE Alu 2 136 -12 6 718 626 275 61 14 chr9 17496660 17496874 -106579298 + Lx6 LINE L1 7179 7402 -58 6 718 388 306 55 34 chr9 17498216 17498453 -106577719 - MER110A LTR ERV1 -90 378 137 6 718 229 119 71 0 chr9 17498760 17498802 -106577370 + Lx9 LINE L1 7407 7451 -193 6 718 1726 215 115 44 chr9 17498812 17499265 -106576907 + RMER1B Other Other 569 1053 -13 6 718 378 223 45 0 chr9 17499233 17499345 -106576827 + Lx9 LINE L1 7504 7620 -24 6 718 703 258 21 21 chr9 17499575 17499769 -106576403 + Lx6 LINE L1 7267 7460 0 6 718 432 244 11 0 chr9 17499899 17499989 -106576183 + ORR1E LTR MaLR 3 93 -266 6 718 1278 180 5 0 chr9 17500000 17500211 -106575961 + URR1B DNA MER1_type 13 224 -1 1 718 550 254 38 81 chr9 17500211 17500236 -106575936 - CYRA11_Mm Unknown Y-chromosome -243 374 149 2 718 536 317 71 28 chr9 17500213 17500424 -106575748 + ORR1E LTR MaLR 86 305 -54 3 718 803 318 82 33 chr9 17500430 17500794 -106575378 + MTD LTR MaLR 24 405 -14 4 718 258 275 141 8 chr9 17501063 17501184 -106574988 + MT2A LTR ERVL 395 531 -2 5 718 209 241 33 33 chr9 17501239 17501329 -106574843 + CT-rich Low_complexity Low_complexity 5 94 0 6 718 982 151 0 0 chr9 17502175 17502314 -106573858 + B1_Mus2 SINE Alu 2 140 -7 7 718 277 197 38 50 chr9 17502578 17502658 -106573514 + B4 SINE B4 8 86 -206 8 718 885 107 0 0 chr9 17502910 17503041 -106573131 + (TC)n Simple_repeat Simple_repeat 2 132 0 9 718 245 325 12 49 chr9 17503088 17503169 -106573003 + RSINE1 SINE B4 1 78 -87 1 718 207 0 0 0 chr9 17503226 17503249 -106572923 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 718 558 0 0 0 chr9 17503249 17503310 -106572862 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 718 192 77 0 0 chr9 17503725 17503751 -106572421 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1 718 1193 192 12 15 chr9 17503751 17504010 -106572162 - Lx2 LINE L1 0 6997 6740 1 718 1424 156 16 16 chr9 17504010 17504257 -106571915 + Lx2B LINE L1 6481 6727 -273 1 718 252 0 0 0 chr9 17504505 17504533 -106571639 + (T)n Simple_repeat Simple_repeat 1 28 0 1 718 540 304 0 0 chr9 17504551 17504676 -106571496 - ORR1E LTR MaLR -226 133 9 1 718 7196 73 2 0 chr9 17506578 17507511 -106568661 - L1_Mm LINE L1 -7 5876 4942 1 718 793 113 38 0 chr9 17507511 17507644 -106568528 + L1Md_F2 LINE L1 6444 6581 -1 1 718 247 302 76 15 chr9 17507788 17507919 -106568253 - L1M5 LINE L1 -336 5826 5688 2 718 1589 322 77 37 chr9 17508237 17509137 -106567035 - Lx8 LINE L1 -5 7468 6533 2 718 1098 102 0 0 chr9 17509465 17509632 -106566540 + (TTCC)n Simple_repeat Simple_repeat 4 170 0 2 718 226 276 10 48 chr9 17510041 17510144 -106566028 + MIRc SINE MIR 170 268 0 2 718 4448 63 11 5 chr9 17510693 17511263 -106564909 - L1_Mus1 LINE L1 -112 6455 5883 2 718 2735 168 32 30 chr9 17511820 17512380 -106563792 - RLTR17 LTR ERVK 0 561 1 2 718 1745 189 25 28 chr9 17512382 17512774 -106563398 - RMER3D-int LTR ERVK -2 2840 2450 2 718 1108 238 11 21 chr9 17512799 17513078 -106563094 - RMER3D-int LTR ERVK -512 2330 2055 2 718 195 42 0 0 chr9 17513088 17513112 -106563060 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 2 718 941 157 0 6 chr9 17513123 17513296 -106562876 + CT-rich Low_complexity Low_complexity 3 174 0 2 718 216 0 0 0 chr9 17513297 17513321 -106562851 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2 718 6312 157 133 17 chr9 17513327 17514880 -106561292 - Lx LINE L1 -7 6647 4839 2 718 4332 176 58 58 chr9 17514886 17515293 -106560879 - RMER3D-int LTR ERVK -790 2052 1613 2 718 3723 51 0 17 chr9 17515293 17515773 -106560399 - L1Md_F3 LINE L1 -2 6582 6111 3 718 4332 171 58 56 chr9 17515773 17516415 -106559757 - RMER3D-int LTR ERVK -1230 1612 476 2 718 772 280 64 34 chr9 17516446 17516712 -106559460 - RMER3D-int LTR ERVK -2568 274 1 2 718 3554 169 45 46 chr9 17516712 17517405 -106558767 - RLTR17 LTR ERVK 0 692 1 2 718 1158 174 86 30 chr9 17517406 17517743 -106558429 - RMER3D-int LTR ERVK -1 2325 1970 2 718 36416 34 3 9 chr9 17518545 17523747 -106552425 + L1Md_T LINE L1 421 5585 -298 3 718 7913 45 13 0 chr9 17523748 17524731 -106551441 + L1Md_T LINE L1 5587 6582 0 3 718 3852 199 74 4 chr9 17525478 17526248 -106549924 + Lx5 LINE L1 6224 7047 -3 3 718 842 282 10 0 chr9 17526558 17526753 -106549419 - B3 SINE B2 -12 204 8 3 718 308 235 85 64 chr9 17526802 17526943 -106549229 - L1MEg LINE L1 -5239 845 702 3 718 297 0 0 0 chr9 17526996 17527029 -106549143 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 718 229 290 73 31 chr9 17527935 17528031 -106548141 + B1F1 SINE Alu 49 148 -1 3 718 736 261 27 0 chr9 17529622 17529810 -106546362 - L1_Mur3 LINE L1 -7472 240 48 3 718 24 0 0 0 chr9 17529820 17529844 -106546328 + AT_rich Low_complexity Low_complexity 1 24 0 3 718 390 57 0 0 chr9 17531102 17531155 -106545017 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 718 240 281 44 0 chr9 17531321 17531435 -106544737 + (TA)n Simple_repeat Simple_repeat 2 120 0 4 718 898 274 76 60 chr9 17531451 17531928 -106544244 - MT2B2 LTR ERVL -47 537 1 4 718 1182 234 15 26 chr9 17532416 17532680 -106543492 - RLTR20B3 LTR ERVK 0 577 317 4 718 1440 195 62 23 chr9 17536153 17536458 -106539714 + RMER19C LTR ERVK 295 611 0 4 718 1499 107 9 9 chr9 17536684 17536911 -106539261 + L1_Mus2 LINE L1 6340 6566 0 4 718 431 277 16 25 chr9 17539558 17539680 -106536492 + Lx8 LINE L1 6960 7080 -393 4 718 1816 199 45 17 chr9 17539969 17540273 -106535899 + ORR1B2 LTR MaLR 6 307 -60 4 718 432 0 0 0 chr9 17540273 17540321 -106535851 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 718 1816 199 45 17 chr9 17540321 17540368 -106535804 + ORR1B2 LTR MaLR 308 366 -1 4 718 331 66 52 13 chr9 17540844 17540921 -106535251 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 718 24 0 0 0 chr9 17540930 17540954 -106535218 + AT_rich Low_complexity Low_complexity 1 24 0 4 718 708 318 6 0 chr9 17540954 17541130 -106535042 - B3 SINE B2 -38 178 2 5 718 307 406 31 0 chr9 17541404 17541628 -106534544 + Lx8 LINE L1 7078 7308 -165 4 718 24 53 0 0 chr9 17541750 17541788 -106534384 + AT_rich Low_complexity Low_complexity 1 38 0 5 718 21 0 0 0 chr9 17542013 17542034 -106534138 + AT_rich Low_complexity Low_complexity 1 21 0 5 718 252 246 14 0 chr9 17542539 17542608 -106533564 + GA-rich Low_complexity Low_complexity 1 70 0 5 718 198 0 0 0 chr9 17542766 17542788 -106533384 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 718 2151 184 15 20 chr9 17543113 17543522 -106532650 - MTB_Mm LTR MaLR 0 407 1 5 718 490 343 40 40 chr9 17543792 17544187 -106531985 - L1M5 LINE L1 -2993 3153 2759 5 718 1709 196 18 12 chr9 17544553 17544883 -106531289 - ORR1B1 LTR MaLR -22 372 41 5 718 2232 118 26 0 chr9 17547987 17548326 -106527846 - L1_Mus3 LINE L1 -7 6631 6284 5 718 406 219 67 8 chr9 17548418 17548538 -106527634 - MER20B DNA MER1_type -381 402 276 5 718 489 37 61 0 chr9 17550844 17550926 -106525246 + (TTTA)n Simple_repeat Simple_repeat 1 87 0 6 718 264 190 0 0 chr9 17551140 17551219 -106524953 + CT-rich Low_complexity Low_complexity 2 80 0 6 718 310 338 50 62 chr9 17551228 17551389 -106524783 - HAL1-3A_ME LINE L1 -415 2443 2285 6 718 293 118 0 19 chr9 17551391 17551443 -106524729 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 6 718 633 327 81 50 chr9 17551773 17552034 -106524138 + B4 SINE B4 11 279 -13 6 718 254 324 84 49 chr9 17552864 17553150 -106523022 + RMER17D LTR ERVK 165 460 -429 6 718 213 108 0 0 chr9 17553237 17553274 -106522898 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 718 22 94 0 0 chr9 17554073 17554137 -106522035 + AT_rich Low_complexity Low_complexity 1 64 0 6 718 12873 108 142 8 chr9 17554367 17557303 -106518869 + L1_Mus3 LINE L1 3306 6638 0 6 718 3080 149 96 12 chr9 17557310 17557951 -106518221 + RMER17B LTR ERVK 240 958 0 6 718 18424 187 19 8 chr9 17557955 17559033 -106517139 - L1VL2 LINE L1 -769 5114 4016 7 718 3487 18 2 0 chr9 17559033 17559428 -106516744 + MTA_Mm LTR MaLR 1 396 0 7 718 9368 9 19 4 chr9 17559428 17560509 -106515663 + MTA_Mm-int LTR MaLR 1 1098 0 7 718 3475 20 2 0 chr9 17560509 17560904 -106515268 + MTA_Mm LTR MaLR 1 396 0 7 718 18424 187 19 8 chr9 17560904 17561377 -106514795 - L1VL2 LINE L1 -1868 4015 3544 7 718 242 29 29 0 chr9 17561377 17561412 -106514760 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 89 18424 169 17 7 chr9 17561412 17564495 -106511677 - L1VL2 LINE L1 -2340 3543 427 7 719 631 330 16 16 chr9 17564582 17564767 -106511405 + B3 SINE B2 2 186 -30 7 719 373 225 28 35 chr9 17564978 17565121 -106511051 + Lx7 LINE L1 7390 7531 -165 7 719 742 32 0 0 chr9 17565135 17565228 -106510944 + BC1_Mm scRNA scRNA 1 93 -59 7 719 261 228 66 47 chr9 17565230 17565336 -106510836 + Lx8 LINE L1 7356 7463 -10 7 719 22 0 0 0 chr9 17565337 17565359 -106510813 + AT_rich Low_complexity Low_complexity 1 22 0 7 719 297 131 0 0 chr9 17565370 17565431 -106510741 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 7 719 4644 140 20 17 chr9 17566495 17567274 -106508898 + Lx LINE L1 5869 6650 -4 7 719 1284 193 141 7 chr9 17567390 17567667 -106508505 - RLTR20B3 LTR ERVK -263 314 1 8 719 1333 151 60 16 chr9 17568025 17568274 -106507898 - L1_Mur1 LINE L1 -1767 4119 3860 8 719 491 213 25 0 chr9 17568290 17568412 -106507760 + Lx2 LINE L1 6870 6994 -3 8 719 23 0 0 0 chr9 17568626 17568649 -106507523 + AT_rich Low_complexity Low_complexity 1 23 0 8 719 989 124 0 6 chr9 17568922 17569084 -106507088 + (GAAA)n Simple_repeat Simple_repeat 1 161 0 8 719 526 58 60 47 chr9 17569322 17569546 -106506626 + (TAAA)n Simple_repeat Simple_repeat 1 227 0 8 719 22 35 0 0 chr9 17569663 17569692 -106506480 + AT_rich Low_complexity Low_complexity 1 29 0 8 719 229 211 66 0 chr9 17570587 17570663 -106505509 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 8 719 204 40 0 0 chr9 17570689 17570714 -106505458 + (TAGA)n Simple_repeat Simple_repeat 3 27 0 8 719 859 284 10 0 chr9 17570870 17571074 -106505098 - B3 SINE B2 -3 213 8 8 719 315 235 78 64 chr9 17571123 17571264 -106504908 - L1MEg LINE L1 -5239 845 703 8 719 453 36 0 0 chr9 17571318 17571373 -106504799 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 719 291 85 0 0 chr9 17574865 17574912 -106501260 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 719 3499 161 10 10 chr9 17574914 17575541 -106500631 - Lx2B LINE L1 -681 6319 5693 9 719 2535 170 82 4 chr9 17575527 17575708 -106500464 - Lx2B LINE L1 -386 5491 5272 9 719 2405 71 3 24 chr9 17575708 17576040 -106500132 - L1_Mus2 LINE L1 -2 6564 6240 9 719 2535 170 82 4 chr9 17576040 17576359 -106499813 - Lx2B LINE L1 -606 5271 4952 9 719 739 138 0 0 chr9 17576359 17576475 -106499697 + RMER19A LTR ERVK 622 737 0 9 719 2886 122 8 38 chr9 17576779 17577256 -106498916 + RMER16 LTR ERVK 71 533 0 9 719 870 247 9 13 chr9 17577256 17577486 -106498686 - RLTR16 LTR ERVK -45 460 232 9 719 3628 159 7 18 chr9 17578743 17579351 -106496821 + MT2B LTR ERVL 1 601 0 9 719 22 0 0 0 chr9 17579439 17579461 -106496711 + AT_rich Low_complexity Low_complexity 1 22 0 9 719 213 94 0 0 chr9 17579516 17579548 -106496624 + (TA)n Simple_repeat Simple_repeat 2 33 0 9 719 21 36 0 0 chr9 17579605 17579633 -106496539 + AT_rich Low_complexity Low_complexity 1 28 0 1 719 395 330 120 48 chr9 17580193 17580635 -106495537 - Lx8 LINE L1 -1 7472 6999 1 719 214 128 43 0 chr9 17580635 17580682 -106495490 + T-rich Low_complexity Low_complexity 4 52 0 1 719 29 98 0 0 chr9 17580718 17580810 -106495362 + AT_rich Low_complexity Low_complexity 1 92 0 1 719 1129 190 23 68 chr9 17580826 17581091 -106495081 - Lx3C LINE L1 -3 6973 6721 1 719 297 0 0 0 chr9 17581225 17581258 -106494914 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 719 848 162 0 6 chr9 17581609 17581777 -106494395 + (TA)n Simple_repeat Simple_repeat 2 168 0 1 719 23002 111 57 1 chr9 17582056 17586495 -106489677 - L1_Mus1 LINE L1 0 6567 1862 1 719 216 0 0 0 chr9 17586497 17586521 -106489651 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 719 416 53 18 0 chr9 17586527 17586584 -106489588 - B1_Mur4 SINE Alu -7 143 86 1 719 1585 236 91 46 chr9 17586584 17587219 -106488953 - L1_Mus1 LINE L1 -5621 995 332 1 719 857 254 3 92 chr9 17587222 17587515 -106488657 - L1VL1 LINE L1 -5933 485 44 1 719 402 232 32 0 chr9 17587776 17587875 -106488297 - B1_Mur2 SINE Alu -1 148 42 1 719 206 196 18 18 chr9 17588315 17588372 -106487800 + T-rich Low_complexity Low_complexity 4 60 0 1 719 1867 202 66 0 chr9 17588429 17588824 -106487348 + MTC LTR MaLR 1 421 0 1 719 267 347 62 48 chr9 17589066 17589484 -106486688 - L1MD2 LINE L1 -371 5988 5565 1 719 413 336 103 21 chr9 17590476 17590807 -106485365 + L1MA8 LINE L1 5833 6190 -101 1 719 1107 81 0 7 chr9 17590994 17591006 -106485166 - B1_Mus1 SINE Alu 0 148 137 1 719 776 11 11 0 chr9 17591006 17591099 -106485073 + (TTTC)n Simple_repeat Simple_repeat 1 94 0 1 719 1107 81 0 7 chr9 17591099 17591235 -106484937 - B1_Mus1 SINE Alu -12 136 1 1 719 4909 49 0 8 chr9 17591372 17591989 -106484183 - L1Md_F2 LINE L1 -13 6569 5958 1 719 2764 186 51 2 chr9 17592470 17593004 -106483168 + RLTR20B2 LTR ERVK 1 560 0 1 719 21 0 0 0 chr9 17593036 17593057 -106483115 + AT_rich Low_complexity Low_complexity 1 21 0 1 719 357 177 24 48 chr9 17593544 17593627 -106482545 + MYSERV16_I-int LTR ERVK 1028 1108 -1734 1 719 271 226 9 64 chr9 17593861 17593970 -106482202 + MYSERV16_I-int LTR ERVK 1111 1213 -1629 1 719 1912 211 126 23 chr9 17594027 17594756 -106481416 + MYSERV16_I-int LTR ERVK 5 774 -1552 1 719 355 347 90 25 chr9 17595139 17595384 -106480788 - MLT1G3 LTR MaLR -231 364 104 1 719 398 317 21 38 chr9 17595489 17595656 -106480516 - MTE-int LTR MaLR -447 1062 904 1 719 1423 201 142 0 chr9 17595657 17595975 -106480197 + MTD LTR MaLR 1 363 -56 1 719 543 69 0 0 chr9 17595980 17596052 -106480120 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 719 1867 203 28 9 chr9 17596772 17597195 -106478977 + MYSERV16_I-int LTR ERVK 812 1242 -1084 1 719 1030 106 29 29 chr9 17597195 17597216 -106478956 - B2_Mm2 SINE B2 -15 180 162 1 719 396 0 0 0 chr9 17597216 17597260 -106478912 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 719 1030 106 29 29 chr9 17597260 17597413 -106478759 - B2_Mm2 SINE B2 -34 161 6 1 719 4669 195 44 4 chr9 17597413 17598454 -106477718 + MYSERV16_I-int LTR ERVK 1244 2326 0 1 719 2148 175 141 76 chr9 17598454 17598536 -106477636 + RLTR20B2 LTR ERVK 1 82 -478 1 719 1162 55 7 0 chr9 17598536 17598681 -106477491 + B1_Mm SINE Alu 2 147 0 1 719 2148 175 141 76 chr9 17598681 17599124 -106477048 + RLTR20B2 LTR ERVK 83 560 0 1 719 414 0 0 0 chr9 17599136 17599182 -106476990 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 719 546 319 117 32 chr9 17599190 17599439 -106476733 - B4A SINE B4 -21 271 2 1 719 458 288 103 85 chr9 17600292 17600611 -106475561 - Lx9 LINE L1 -28 7616 7292 1 719 31 26 0 0 chr9 17601964 17602002 -106474170 + AT_rich Low_complexity Low_complexity 1 38 0 1 719 327 49 0 0 chr9 17602117 17602158 -106474014 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 719 27 81 0 0 chr9 17602258 17602320 -106473852 + AT_rich Low_complexity Low_complexity 1 62 0 1 719 301 288 0 40 chr9 17602739 17602815 -106473357 + ID4 SINE ID 11 83 0 1 719 5053 191 17 5 chr9 17604652 17605663 -106470509 - Lx5 LINE L1 -670 5207 4185 1 719 6828 199 55 3 chr9 17605664 17607376 -106468796 + Lx5 LINE L1 5235 7046 -4 1 719 21 57 0 0 chr9 17607806 17607841 -106468331 + AT_rich Low_complexity Low_complexity 1 35 0 1 719 599 26 13 0 chr9 17607936 17608013 -106468159 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 1 719 387 0 0 0 chr9 17608021 17608064 -106468108 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 719 530 280 8 8 chr9 17608086 17608212 -106467960 + ID_B1 SINE B4 92 217 -7 1 719 6540 93 7 51 chr9 17609636 17610659 -106465513 + RLTR13A3 LTR ERVK 1 978 0 1 719 204 284 80 13 chr9 17611048 17611123 -106465049 + MIR SINE MIR 61 140 -122 1 719 435 325 98 0 chr9 17612432 17612626 -106463546 + MTD LTR MaLR 27 239 -180 1 719 5251 143 44 14 chr9 17612628 17614212 -106461960 + L1VL1 LINE L1 213 1848 -1850 1 719 2181 129 9 112 chr9 17614222 17614677 -106461495 + RMER17D2 LTR ERVK 3 410 -399 1 719 1270 150 57 16 chr9 17614665 17614927 -106461245 - RMER17D2 LTR ERVK -110 699 439 1 719 14288 149 77 5 chr9 17614930 17618638 -106457534 + L1_Mus3 LINE L1 2181 6499 -139 1 719 339 85 0 0 chr9 17619271 17619318 -106456854 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 719 461 225 8 0 chr9 17619335 17619455 -106456717 + (TA)n Simple_repeat Simple_repeat 2 122 0 1 719 230 290 0 14 chr9 17619671 17619741 -106456431 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 719 255 103 0 0 chr9 17619955 17619994 -106456178 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 1 719 201 121 0 0 chr9 17620760 17620793 -106455379 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 719 21 0 0 0 chr9 17620923 17620944 -106455228 + AT_rich Low_complexity Low_complexity 1 21 0 1 719 554 302 65 69 chr9 17621931 17622191 -106453981 - Lx5 LINE L1 0 7050 6792 1 719 2807 95 7 2 chr9 17622178 17622599 -106453573 + MusHAL1 LINE L1 1026 1448 -1264 1 719 4137 158 41 1 chr9 17622633 17623363 -106452809 - Lx2 LINE L1 -293 6704 5946 1 719 1587 316 91 55 chr9 17623342 17624334 -106451838 + Lx9 LINE L1 6603 7629 -15 1 719 420 20 0 0 chr9 17624449 17624498 -106451674 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 1 719 1067 88 0 7 chr9 17624609 17624757 -106451415 - B1_Mus2 SINE Alu 0 147 1 1 719 246 105 0 0 chr9 17624773 17624811 -106451361 + (T)n Simple_repeat Simple_repeat 1 38 0 1 719 1072 104 0 0 chr9 17624813 17624957 -106451215 - B1_Mus2 SINE Alu -1 146 3 1 719 1895 267 209 27 chr9 17624967 17626146 -106450026 + L1_Mur3 LINE L1 1771 3163 -2717 1 719 8018 155 15 17 chr9 17626172 17627840 -106448332 + Lx2 LINE L1 5328 6997 0 1 719 832 229 34 47 chr9 17627844 17627910 -106448262 + Lx7 LINE L1 5351 5419 -461 1 719 3086 35 56 0 chr9 17627910 17628285 -106447887 - MTA_Mm LTR MaLR 0 396 1 1 719 832 229 34 47 chr9 17628285 17628452 -106447720 + Lx7 LINE L1 5420 5581 -299 1 719 255 61 0 0 chr9 17628462 17628495 -106447677 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 1 719 305 329 32 45 chr9 17628522 17628678 -106447494 + Lx6 LINE L1 7296 7449 -11 1 719 3764 307 49 36 chr9 17628922 17630092 -106446080 + Lx7 LINE L1 5587 6786 -910 1 719 3447 80 13 17 chr9 17630092 17630563 -106445609 - L1_Mus1 LINE L1 -1 6566 6098 1 719 3764 307 49 36 chr9 17630563 17631082 -106445090 + Lx7 LINE L1 6787 7298 -398 1 719 402 257 0 0 chr9 17631266 17631371 -106444801 + Lx6 LINE L1 7356 7460 0 1 719 1023 91 21 0 chr9 17632516 17632659 -106443513 - B2_Mm2 SINE B2 -49 146 1 1 719 345 329 83 4 chr9 17632894 17633123 -106443049 - L1MA6 LINE L1 -473 5827 5581 1 719 565 311 163 64 chr9 17633164 17633704 -106442468 - Lx5 LINE L1 -33 7427 6483 1 719 368 379 7 0 chr9 17633707 17633847 -106442325 - Lx5 LINE L1 -689 6361 6221 1 719 2786 201 24 5 chr9 17633844 17634503 -106441669 + L1_Mur2 LINE L1 2652 3323 -2554 1 719 314 313 55 13 chr9 17634533 17634731 -106441441 - L1MA6 LINE L1 -790 5510 5306 1 719 380 344 6 32 chr9 17634873 17635029 -106441143 + RSINE1 SINE B4 4 155 -10 1 719 425 292 71 7 chr9 17635496 17635651 -106440521 + B2_Mm2 SINE B2 10 174 -21 1 719 244 356 7 43 chr9 17636071 17636209 -106439963 + MER5A1 DNA MER1_type 34 166 0 1 719 569 334 62 12 chr9 17636528 17636949 -106439223 - L1MA4A LINE L1 -371 5932 5491 1 719 1012 275 13 67 chr9 17636980 17637296 -106438876 - Lx6 LINE L1 -55 7405 7107 1 719 1257 265 93 70 chr9 17637318 17637845 -106438327 + RLTR26 LTR ERVK 40 578 -64 1 719 690 262 96 0 chr9 17637878 17638065 -106438107 + Lx6 LINE L1 6069 6273 -1187 1 719 924 283 72 47 chr9 17638070 17638535 -106437637 + Lx6 LINE L1 6455 6923 -537 1 719 482 313 31 10 chr9 17638587 17638969 -106437203 - L1MA4A LINE L1 -448 5432 5008 1 719 720 101 0 0 chr9 17639028 17639085 -106437087 + (TCC)n Simple_repeat Simple_repeat 1 57 0 1 719 1170 35 29 6 chr9 17639085 17639258 -106436914 + (TTC)n Simple_repeat Simple_repeat 3 179 0 1 719 720 101 0 0 chr9 17639258 17639309 -106436863 + (TCC)n Simple_repeat Simple_repeat 1 51 0 1 719 185 182 0 18 chr9 17639313 17639369 -106436803 + CT-rich Low_complexity Low_complexity 2 56 0 1 719 10748 94 30 11 chr9 17639550 17640048 -106436124 + Lx3A LINE L1 4235 4737 -1149 1 719 360 0 0 0 chr9 17640048 17640088 -106436084 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 719 10748 95 30 11 chr9 17640088 17641237 -106434935 + Lx3A LINE L1 4738 5911 -1070 1 719 348 64 0 0 chr9 17641237 17641284 -106434888 + (TTAA)n Simple_repeat Simple_repeat 1 47 0 1 719 8948 122 8 23 chr9 17641284 17642367 -106433805 + Lx3A LINE L1 5912 6979 -2 1 719 326 296 38 51 chr9 17642386 17642570 -106433602 - L1MA4A LINE L1 -1188 4955 4787 1 719 956 78 0 0 chr9 17642574 17642702 -106433470 - B1_Mus1 SINE Alu -20 128 1 1 719 390 313 87 51 chr9 17642713 17643221 -106432951 - L1_Mur3 LINE L1 -1152 4728 4203 1 719 597 246 33 22 chr9 17643252 17643435 -106432737 - Lx4B LINE L1 -5 7053 6869 1 719 5113 192 40 28 chr9 17643437 17644801 -106431371 - Lx4B LINE L1 -367 6691 5308 1 719 4070 159 23 24 chr9 17644783 17645575 -106430597 - Lx4B LINE L1 -998 4879 4089 1 719 593 219 0 40 chr9 17645569 17645745 -106430427 - Lx4B LINE L1 -4373 1504 1336 1 719 707 148 44 105 chr9 17645725 17645906 -106430266 - Lx2 LINE L1 -1 6996 6827 1 719 619 265 15 0 chr9 17646263 17646399 -106429773 + B1_Mus1 SINE Alu 5 142 -6 1 719 32206 85 19 7 chr9 17646437 17651520 -106424652 + L1Md_F2 LINE L1 218 5585 -298 1 719 7778 63 9 0 chr9 17651521 17652508 -106423664 + L1Md_F2 LINE L1 5587 6582 0 1 719 556 317 124 15 chr9 17652943 17653209 -106422963 - RLTR16 LTR ERVK -210 295 1 1 719 1315 241 26 39 chr9 17654215 17654521 -106421651 - ORR1C1 LTR MaLR 0 378 77 1 719 40638 15 0 6 chr9 17654521 17661128 -106415044 - L1Md_A LINE L1 -10 6572 7 1 719 417 219 28 37 chr9 17661128 17661237 -106414935 - ORR1C1 LTR MaLR -274 110 3 1 719 204 40 0 0 chr9 17661506 17661531 -106414641 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 1 719 511 124 0 10 chr9 17661607 17661705 -106414467 - Lx LINE L1 -1 6653 6557 1 719 416 135 14 0 chr9 17662060 17662134 -106414038 + (CATA)n Simple_repeat Simple_repeat 1 75 0 1 719 6202 97 23 1 chr9 17662402 17663277 -106412895 + L1_Mus4 LINE L1 5739 6632 -4 2 719 623 325 127 18 chr9 17663593 17664153 -106412019 + BLACKJACK DNA AcHobo 1004 1624 -1320 2 719 2113 230 61 28 chr9 17664290 17664543 -106411629 - Lx6 LINE L1 -1385 6075 5814 2 719 2826 73 26 3 chr9 17664543 17664930 -106411242 - MTA_Mm LTR MaLR 0 396 1 2 719 2113 204 130 68 chr9 17664930 17665153 -106411019 - Lx6 LINE L1 -67 5813 5559 2 719 231 125 0 0 chr9 17665153 17665193 -106410979 - B1_Mus2 SINE Alu -27 120 81 2 719 2113 204 130 68 chr9 17665193 17665482 -106410690 - Lx6 LINE L1 -67 5558 5227 2 719 1237 228 7 0 chr9 17665480 17665765 -106410407 - Lx6 LINE L1 -941 4939 4653 2 719 1429 155 60 21 chr9 17665832 17666116 -106410056 + RLTR45-int LTR ERVK 2905 3199 -4045 2 719 6161 206 61 70 chr9 17666247 17668086 -106408086 + ETnERV2-int LTR ERVK 1472 3929 -3477 2 719 553 93 73 0 chr9 17668086 17668237 -106407935 + (TA)n Simple_repeat Simple_repeat 2 163 0 2 719 2360 153 14 70 chr9 17668237 17668348 -106407824 + RMER16-int LTR ERVK 2864 2966 -2440 2 719 1100 83 0 0 chr9 17668348 17668483 -106407689 + B1_Mm SINE Alu 3 137 -10 2 719 208 0 30 30 chr9 17668483 17668516 -106407656 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 719 588 65 0 0 chr9 17668534 17668611 -106407561 + (GAA)n Simple_repeat Simple_repeat 2 78 0 2 719 2360 153 14 70 chr9 17668611 17668989 -106407183 + RMER16-int LTR ERVK 2972 3335 -2071 2 719 3090 46 3 0 chr9 17668989 17669377 -106406795 - MTA_Mm LTR MaLR 0 396 8 2 719 3397 140 40 16 chr9 17669428 17670002 -106406170 + RMER16-int LTR ERVK 3589 4176 -1230 2 719 376 271 155 12 chr9 17670199 17670367 -106405805 + ETnERV2-int LTR ERVK 6234 6425 -981 2 719 298 161 89 0 chr9 17670572 17670628 -106405544 + ETnERV2-int LTR ERVK 7332 7392 -14 2 719 2533 99 11 6 chr9 17670646 17671012 -106405160 + RLTR9A LTR ERVK 1 368 0 2 719 226 191 0 0 chr9 17671038 17671080 -106405092 - L1_Mur3 LINE L1 -337 5543 5502 2 719 947 333 52 27 chr9 17671173 17671658 -106404514 + Lx8 LINE L1 6859 7355 -118 2 719 605 304 44 42 chr9 17671769 17672177 -106403995 - L1MC LINE L1 -1065 5081 4673 2 719 282 95 0 0 chr9 17672261 17672303 -106403869 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 719 275 210 35 139 chr9 17672309 17672453 -106403719 + Lx9 LINE L1 7516 7644 0 2 719 247 340 38 47 chr9 17672524 17672737 -106403435 + BLACKJACK DNA AcHobo 2011 2221 -723 2 719 276 82 33 56 chr9 17673816 17673906 -106402266 + A-rich Low_complexity Low_complexity 2 89 0 2 719 1038 88 0 0 chr9 17673939 17674075 -106402097 - B1_Mm SINE Alu 0 147 12 2 719 349 274 20 70 chr9 17674241 17674441 -106401731 - Lx7 LINE L1 0 7696 7507 2 719 24 67 0 39 chr9 17675175 17675253 -106400919 + AT_rich Low_complexity Low_complexity 1 75 0 2 719 408 20 0 0 chr9 17676124 17676173 -106399999 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 719 1968 143 86 83 chr9 17679194 17679613 -106396559 - RLTR9B2 LTR ERVK 0 420 1 2 719 393 39 0 0 chr9 17681602 17681653 -106394519 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 719 333 308 66 33 chr9 17681658 17681779 -106394393 - B1F SINE Alu 0 149 25 2 719 180 111 0 0 chr9 17682398 17682425 -106393747 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2 719 5763 88 16 56 chr9 17682428 17683327 -106392845 - Lx3_Mus LINE L1 -8 7001 6139 2 719 241 324 0 63 chr9 17683513 17683592 -106392580 - RMER21B LTR ERV1 -113 834 761 2 719 453 264 127 57 chr9 17683599 17683828 -106392344 - RMER21B LTR ERV1 -275 567 323 2 719 252 0 0 0 chr9 17685019 17685047 -106391125 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 719 237 33 0 0 chr9 17685249 17685279 -106390893 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 719 225 0 0 0 chr9 17685280 17685305 -106390867 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 719 1158 76 0 0 chr9 17685308 17685453 -106390719 - B1_Mm SINE Alu -2 145 1 2 719 26 50 0 0 chr9 17685456 17685496 -106390676 + AT_rich Low_complexity Low_complexity 1 40 0 2 719 24 0 0 0 chr9 17686080 17686104 -106390068 + AT_rich Low_complexity Low_complexity 1 24 0 2 719 344 283 165 24 chr9 17686388 17686558 -106389614 - RMER30 DNA MER1_type -7 195 2 2 719 21 0 0 0 chr9 17686609 17686630 -106389542 + AT_rich Low_complexity Low_complexity 1 21 0 2 719 3604 131 38 3 chr9 17686652 17687234 -106388938 - Lx3C LINE L1 -1 6975 6374 2 719 198 0 0 0 chr9 17687234 17687256 -106388916 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 719 975 86 0 0 chr9 17687431 17687559 -106388613 - Lx3C LINE L1 -603 6373 6246 2 719 242 151 0 36 chr9 17687567 17687622 -106388550 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 2 719 2974 171 58 7 chr9 17687623 17688172 -106388000 - Lx4A LINE L1 -2 7056 6480 2 719 209 275 0 0 chr9 17688312 17688381 -106387791 + T-rich Low_complexity Low_complexity 1 69 0 2 719 490 165 0 10 chr9 17688383 17688481 -106387691 - Lx2 LINE L1 -18 6979 6883 2 719 6094 127 9 15 chr9 17688481 17689523 -106386649 - Lx2 LINE L1 -468 6529 5493 2 719 1810 143 7 20 chr9 17689502 17689802 -106386370 - Lx4A LINE L1 -558 6500 6205 2 719 489 118 0 26 chr9 17689835 17689913 -106386259 - RMER16-int LTR ERVK -4542 864 789 2 719 2376 112 33 22 chr9 17689989 17690377 -106385795 - Lx4A LINE L1 0 6638 6227 2 719 180 0 0 0 chr9 17690377 17690397 -106385775 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 719 748 74 0 27 chr9 17690399 17690510 -106385662 - B1_Mus2 SINE Alu 0 147 40 2 719 4137 189 48 41 chr9 17690510 17692009 -106384163 - Lx4A LINE L1 -412 6224 4710 2 719 24 53 0 0 chr9 17692535 17692573 -106383599 + AT_rich Low_complexity Low_complexity 1 38 0 2 719 348 24 0 0 chr9 17692884 17692925 -106383247 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 89 28418 28 1 0 chr9 17692966 17696771 -106379401 + L1Md_A LINE L1 854 4663 -1220 2 720 1237 60 6 0 chr9 17696771 17696938 -106379234 + L1Md_F2 LINE L1 6412 6579 -3 2 720 325 0 0 0 chr9 17696938 17696977 -106379195 + L1Md_F LINE L1 1001 1039 -5480 2 720 923 124 10 19 chr9 17696948 17697154 -106379018 + L1VL4 LINE L1 855 1029 -5412 2 720 12120 127 16 3 chr9 17697152 17699083 -106377089 + L1_Mm LINE L1 3544 5499 -384 2 720 4854 73 16 1 chr9 17699083 17699729 -106376443 + L1_Mus2 LINE L1 5905 6559 -7 2 720 216 0 0 0 chr9 17699729 17699753 -106376419 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 2 720 309 303 0 0 chr9 17699753 17699829 -106376343 - Lx6 LINE L1 -343 7117 7042 2 720 232 246 0 84 chr9 17700055 17700126 -106376046 + RLTR9B LTR ERVK 281 345 -92 2 720 1004 262 86 119 chr9 17700212 17700598 -106375574 + MTD LTR MaLR 33 405 -14 2 720 21 0 0 0 chr9 17701932 17701953 -106374219 + AT_rich Low_complexity Low_complexity 1 21 0 2 720 254 289 52 13 chr9 17702006 17702083 -106374089 - ID4_ SINE ID -3 80 1 2 720 21 36 0 0 chr9 17703325 17703353 -106372819 + AT_rich Low_complexity Low_complexity 1 28 0 2 720 25783 107 17 5 chr9 17704475 17706301 -106369871 - L1_Mus2 LINE L1 0 6566 4733 2 720 189 0 0 0 chr9 17706301 17706322 -106369850 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 720 25783 116 19 8 chr9 17706322 17709225 -106366947 - L1_Mus2 LINE L1 -1151 4732 1776 2 720 483 252 33 30 chr9 17709231 17709403 -106366769 - L1VL1 LINE L1 -6023 399 235 2 720 989 264 72 35 chr9 17709674 17709996 -106366176 - Lx7 LINE L1 -4 7692 7353 2 720 281 26 0 26 chr9 17709996 17710035 -106366137 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2 720 989 264 72 35 chr9 17710035 17710144 -106366028 - Lx7 LINE L1 -344 7352 7245 2 720 1167 226 36 48 chr9 17710168 17710503 -106365669 - Lx7 LINE L1 -2 7694 7364 2 720 663 46 0 0 chr9 17710507 17710594 -106365578 + (CA)n Simple_repeat Simple_repeat 1 87 0 2 720 262 229 16 0 chr9 17711109 17711170 -106365002 + (CATA)n Simple_repeat Simple_repeat 2 63 0 2 720 3547 145 7 16 chr9 17711695 17712270 -106363902 + Lx2 LINE L1 6424 6993 -4 2 720 3033 134 30 32 chr9 17712360 17712892 -106363280 - Lx LINE L1 -4 6650 6120 2 720 1765 128 16 72 chr9 17712892 17713213 -106362959 + Lx LINE L1 5816 6118 -536 2 720 533 224 1 54 chr9 17713228 17713393 -106362779 + RMER1B Other Other 870 1063 -3 2 720 598 306 26 90 chr9 17714653 17714919 -106361253 + B4 SINE B4 44 292 0 2 720 649 303 49 7 chr9 17715891 17716157 -106360015 + MTE2b LTR MaLR 99 377 -2 2 720 23 0 0 0 chr9 17717873 17717896 -106358276 + AT_rich Low_complexity Low_complexity 1 23 0 2 720 1280 52 0 0 chr9 17718080 17718233 -106357939 - L1_Mus2 LINE L1 -462 6104 5952 2 720 3362 63 2 2 chr9 17718234 17718660 -106357512 + L1_Mus2 LINE L1 6135 6560 -6 2 720 180 0 0 0 chr9 17718696 17718716 -106357456 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2 720 470 209 132 35 chr9 17718757 17718901 -106357271 + RMER3D-int LTR ERVK 141 298 -2544 2 720 1380 220 39 135 chr9 17719060 17719527 -106356645 - RLTR23 LTR ERV1 0 430 9 2 720 945 254 79 44 chr9 17719738 17720104 -106356068 - MTEa LTR MaLR 0 379 1 2 720 700 330 47 38 chr9 17720105 17720423 -106355749 - MTEa-int LTR MaLR -2 1578 1258 2 720 21888 60 2 0 chr9 17720664 17724197 -106351975 - L1Md_F2 LINE L1 0 6582 3045 2 720 47 53 0 0 chr9 17724201 17724276 -106351896 + AT_rich Low_complexity Low_complexity 1 75 0 2 720 553 268 340 9 chr9 17724278 17724496 -106351676 - MT2A LTR ERVL -71 462 173 2 720 376 241 181 0 chr9 17724496 17724612 -106351560 + B1_Mm SINE Alu 2 138 -9 2 720 471 118 0 0 chr9 17724612 17724697 -106351475 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 720 497 289 26 7 chr9 17724714 17724867 -106351305 - MT2A LTR ERVL -295 238 83 2 720 3266 134 29 0 chr9 17724877 17725401 -106350771 + L1_Mus4 LINE L1 6095 6633 -3 2 720 467 182 0 54 chr9 17725440 17725533 -106350639 - MT2A LTR ERVL -445 88 1 2 720 763 197 0 56 chr9 17725533 17725683 -106350489 - RLTR40 LTR ERVK -523 294 154 2 720 180 125 0 0 chr9 17725746 17725778 -106350394 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 720 254 221 15 0 chr9 17725786 17725854 -106350318 + Lx9 LINE L1 7519 7587 -57 2 720 791 174 56 0 chr9 17725908 17726052 -106350120 - RLTR40 LTR ERVK -665 152 1 2 720 671 344 74 54 chr9 17726547 17726897 -106349275 - ORR1E LTR MaLR 0 359 3 2 720 413 307 8 34 chr9 17727418 17727536 -106348636 + PB1D10 SINE Alu 1 115 -2 2 720 569 126 0 46 chr9 17727974 17727990 -106348182 - Lx3A LINE L1 0 6981 6970 2 720 342 0 0 0 chr9 17727990 17728028 -106348144 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 720 569 126 0 46 chr9 17728028 17728119 -106348053 - Lx3A LINE L1 -12 6969 6879 2 720 229 242 29 57 chr9 17728580 17728650 -106347522 + MIR3 SINE MIR 140 207 -1 2 720 396 284 76 21 chr9 17729020 17729164 -106347008 - Lx6 LINE L1 -243 7217 7066 2 720 422 188 112 35 chr9 17729166 17729309 -106346863 + Lx6 LINE L1 7303 7456 -4 2 720 838 304 58 19 chr9 17729765 17730130 -106346042 + MTEb LTR MaLR 1 379 0 2 720 239 72 0 23 chr9 17730262 17730305 -106345867 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2 720 1103 231 67 20 chr9 17730410 17730741 -106345431 + MTD LTR MaLR 46 419 0 3 720 848 317 63 28 chr9 17730903 17730963 -106345209 + Lx8 LINE L1 6960 7020 -453 3 720 3389 33 2 0 chr9 17730963 17731358 -106344814 - MTA_Mm LTR MaLR 0 396 1 3 720 848 317 63 28 chr9 17731358 17731615 -106344557 + Lx8 LINE L1 7021 7288 -185 3 720 1742 269 20 14 chr9 17731807 17732297 -106343875 - RLTR16 LTR ERVK -12 493 1 3 720 25 31 0 0 chr9 17732382 17732414 -106343758 + AT_rich Low_complexity Low_complexity 1 32 0 3 720 883 147 0 23 chr9 17732678 17732778 -106343394 + polypurine Low_complexity Low_complexity 4 103 0 3 720 1182 112 0 0 chr9 17732778 17732956 -106343216 + (GA)n Simple_repeat Simple_repeat 2 179 0 3 720 883 147 0 23 chr9 17732956 17733017 -106343155 + polypurine Low_complexity Low_complexity 104 162 0 3 720 1305 83 0 0 chr9 17733017 17733197 -106342975 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 720 883 147 0 23 chr9 17733197 17733208 -106342964 + polypurine Low_complexity Low_complexity 163 173 0 3 720 1354 165 4 4 chr9 17734839 17735083 -106341089 + Lx4A LINE L1 5058 5301 -576 3 720 2907 100 16 7 chr9 17735085 17735525 -106340647 + RMER16 LTR ERVK 3 533 0 3 720 3392 144 38 6 chr9 17735527 17736225 -106339947 + Lx4A LINE L1 5299 6020 -1038 3 720 4333 119 13 0 chr9 17736209 17736897 -106339275 - L1_Mm LINE L1 -2100 3783 3087 3 720 24 53 0 0 chr9 17737010 17737048 -106339124 + AT_rich Low_complexity Low_complexity 1 38 0 3 720 19638 194 42 34 chr9 17737177 17738725 -106337447 + Lx LINE L1 514 2026 -3860 3 720 1551 35 30 0 chr9 17738725 17738923 -106337249 + L1Md_A LINE L1 6379 6582 0 3 720 19638 183 68 29 chr9 17738923 17739066 -106337106 + Lx LINE L1 2027 2131 -3755 3 720 1231 60 6 0 chr9 17739066 17739234 -106336938 + L1Md_F2 LINE L1 6410 6578 -4 3 720 19638 183 68 29 chr9 17739234 17740159 -106336013 + Lx LINE L1 2132 3056 -2830 3 720 321 26 0 0 chr9 17740159 17740197 -106335975 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 720 19638 183 68 29 chr9 17740197 17742005 -106334167 + Lx LINE L1 3057 5109 -777 3 720 1062 96 0 7 chr9 17742005 17742152 -106334020 + B1_Mm SINE Alu 2 147 0 3 720 19638 141 33 16 chr9 17742152 17743699 -106332473 + Lx LINE L1 5110 6646 -8 3 720 522 46 0 0 chr9 17743699 17743764 -106332408 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 3 720 294 301 48 80 chr9 17743793 17743887 -106332285 - RMER2 LTR ERV1 0 567 472 3 720 3253 197 32 12 chr9 17743887 17744564 -106331608 - Lx3C LINE L1 -5 6971 6281 3 720 294 301 48 80 chr9 17744564 17744657 -106331515 - RMER2 LTR ERV1 -96 471 386 3 720 1994 110 100 36 chr9 17744988 17745348 -106330824 - RLTR9A2 LTR ERVK 0 383 1 3 720 234 391 7 43 chr9 17746411 17746550 -106329622 + MIR SINE MIR 35 168 -94 3 720 596 282 43 29 chr9 17747920 17748128 -106328044 + B3 SINE B2 1 211 -5 3 720 547 347 49 15 chr9 17748690 17748895 -106327277 + B3 SINE B2 5 216 0 3 720 890 37 0 0 chr9 17749079 17749188 -106326984 - MTA_Mm LTR MaLR -287 109 1 3 720 7787 82 12 6 chr9 17749188 17750280 -106325892 - MTA_Mm-int LTR MaLR 0 1098 1 3 720 2806 94 2 8 chr9 17750280 17750678 -106325494 - MTA_Mm LTR MaLR 0 396 1 3 720 255 230 241 0 chr9 17750680 17750767 -106325405 + B2_Mm2 SINE B2 6 113 -82 3 720 228 100 0 0 chr9 17750802 17750842 -106325330 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 720 351 113 0 0 chr9 17750858 17750911 -106325261 + (T)n Simple_repeat Simple_repeat 1 53 0 3 720 198 219 0 0 chr9 17750992 17751056 -106325116 + A-rich Low_complexity Low_complexity 1 64 0 3 720 276 111 0 0 chr9 17751308 17751353 -106324819 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 720 275 161 0 18 chr9 17751469 17751526 -106324646 + (TAA)n Simple_repeat Simple_repeat 2 57 0 3 720 23 54 0 0 chr9 17752197 17752234 -106323938 + AT_rich Low_complexity Low_complexity 1 37 0 3 720 387 0 0 0 chr9 17752485 17752528 -106323644 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 720 3753 35 7 2 chr9 17752811 17753269 -106322903 - L1Md_F2 LINE L1 0 6582 6123 3 720 1124 76 0 14 chr9 17753722 17753868 -106322304 + B1_Mus2 SINE Alu 3 146 -1 3 720 1521 335 53 26 chr9 17754952 17755633 -106320539 + Lx8 LINE L1 6577 7275 -198 3 720 21 0 0 0 chr9 17755815 17755836 -106320336 + AT_rich Low_complexity Low_complexity 1 21 0 3 720 557 329 17 35 chr9 17755854 17756027 -106320145 + B4A SINE B4 123 292 0 3 720 957 107 0 0 chr9 17756563 17756694 -106319478 + B1_Mus1 SINE Alu 2 132 -16 3 720 333 0 0 0 chr9 17756700 17756737 -106319435 + (TAA)n Simple_repeat Simple_repeat 2 38 0 3 720 307 324 97 41 chr9 17756844 17756989 -106319183 + B4 SINE B4 2 154 -138 3 720 323 217 62 14 chr9 17757191 17757336 -106318836 + Lx9 LINE L1 7491 7642 -2 3 720 4842 43 0 0 chr9 17757650 17758237 -106317935 + L1Md_F2 LINE L1 5000 5586 -297 3 720 8003 48 6 2 chr9 17758238 17759229 -106316943 + L1Md_F2 LINE L1 5588 6582 0 3 720 1230 121 0 10 chr9 17759232 17759432 -106316740 + L1Md_F2 LINE L1 6379 6576 -6 3 720 207 192 41 0 chr9 17759684 17759757 -106316415 + GA-rich Low_complexity Low_complexity 1 76 0 3 720 24 32 0 0 chr9 17760447 17760478 -106315694 + AT_rich Low_complexity Low_complexity 1 31 0 3 720 8231 146 10 4 chr9 17760643 17762103 -106314069 + Lx3B LINE L1 5505 6972 -1 3 720 219 196 20 0 chr9 17762103 17762154 -106314018 + A-rich Low_complexity Low_complexity 1 52 0 3 720 265 197 0 16 chr9 17762341 17762403 -106313769 + Lx6 LINE L1 7374 7434 -26 3 720 1697 189 102 18 chr9 17763907 17764573 -106311599 + L1_Mur2 LINE L1 915 1643 -4234 3 720 5931 142 54 2 chr9 17764572 17766083 -106310089 - Lx4A LINE L1 -368 6690 5071 3 720 28 29 0 0 chr9 17766435 17766470 -106309702 + AT_rich Low_complexity Low_complexity 1 35 0 3 720 203 203 0 17 chr9 17766536 17766596 -106309576 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 720 402 200 54 0 chr9 17766634 17766764 -106309408 + Lx9 LINE L1 7488 7624 -20 3 720 372 167 162 27 chr9 17767613 17767724 -106308448 - Lx4B LINE L1 -19 7039 6914 3 720 2656 174 7 4 chr9 17767706 17768163 -106308009 + Lx4B LINE L1 6467 6924 -134 3 720 313 291 91 19 chr9 17768209 17768363 -106307809 - Lx8 LINE L1 -23 7450 7286 3 720 306 230 133 28 chr9 17768361 17768504 -106307668 + Lx9 LINE L1 7388 7545 -99 3 720 24 32 0 0 chr9 17768927 17768958 -106307214 + AT_rich Low_complexity Low_complexity 1 31 0 3 720 502 317 95 4 chr9 17769106 17769337 -106306835 + MER73 LTR ERVL 92 343 -301 3 720 4480 132 11 34 chr9 17769709 17770533 -106305639 + RMER17D2 LTR ERVK 3 807 -2 3 720 207 0 0 0 chr9 17770896 17770919 -106305253 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 720 1459 197 16 13 chr9 17771289 17771592 -106304580 + Lx4B LINE L1 6751 7054 -4 3 720 219 36 0 0 chr9 17771984 17772012 -106304160 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 720 38037 42 0 3 chr9 17772014 17778318 -106297854 - L1Md_T LINE L1 -6 6579 196 3 720 581 124 10 0 chr9 17778617 17778714 -106297458 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 3 720 24 32 0 0 chr9 17779026 17779057 -106297115 + AT_rich Low_complexity Low_complexity 1 31 0 3 720 23 86 0 0 chr9 17779162 17779220 -106296952 + AT_rich Low_complexity Low_complexity 1 58 0 3 720 315 0 0 0 chr9 17779579 17779614 -106296558 + (T)n Simple_repeat Simple_repeat 1 35 0 3 720 1255 34 0 0 chr9 17779614 17779761 -106296411 - B1_Mus2 SINE Alu 0 147 1 3 720 12729 128 11 37 chr9 17780008 17780300 -106295872 + L1_Mm LINE L1 3046 3339 -2544 3 720 1127 96 0 0 chr9 17780300 17780446 -106295726 + B1_Mus2 SINE Alu 2 147 0 3 720 12729 128 11 37 chr9 17780446 17782471 -106293701 + L1_Mm LINE L1 3340 5303 -580 3 720 25167 87 104 12 chr9 17782483 17787747 -106288425 + L1_Mus1 LINE L1 808 6567 0 3 720 1254 201 220 6 chr9 17788026 17788371 -106287801 + MTD LTR MaLR 1 419 0 3 720 24 0 0 0 chr9 17789431 17789455 -106286717 + AT_rich Low_complexity Low_complexity 1 24 0 3 720 515 298 163 78 chr9 17789564 17789612 -106286560 + ORR1E LTR MaLR 1 46 -313 3 720 1887 189 36 13 chr9 17789612 17789997 -106286175 + ORR1B1 LTR MaLR 1 394 0 3 720 515 298 163 78 chr9 17789997 17790279 -106285893 + ORR1E LTR MaLR 47 359 0 3 720 275 333 84 42 chr9 17790398 17790517 -106285655 - PB1 SINE Alu -2 125 2 3 720 3399 83 6 2 chr9 17791738 17792208 -106283964 - L1_Mus3 LINE L1 -1 6637 6166 3 720 371 138 203 91 chr9 17792209 17792352 -106283820 + LSU-rRNA_Hsa rRNA rRNA 2842 3000 -2035 3 720 213 121 0 0 chr9 17792442 17792475 -106283697 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 720 297 243 108 12 chr9 17792861 17792997 -106283175 - L1M5 LINE L1 -1067 5076 4862 3 720 748 36 9 0 chr9 17793014 17793124 -106283048 + L1Md_F2 LINE L1 6472 6582 0 3 720 5489 56 7 1 chr9 17793131 17793849 -106282323 + MTA_Mm-int LTR MaLR 377 1098 0 3 720 1053 69 41 0 chr9 17793849 17793994 -106282178 + MTA_Mm LTR MaLR 1 151 -245 3 720 431 247 116 7 chr9 17794171 17794326 -106281846 - L1_Mur3 LINE L1 -1016 4864 4693 3 720 1674 251 98 4 chr9 17794427 17794929 -106281243 + RMER1B Other Other 1 867 -199 3 720 2424 166 74 17 chr9 17794929 17795010 -106281162 + Lx LINE L1 4547 4627 -1256 3 720 321 26 0 0 chr9 17795010 17795048 -106281124 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 720 2424 166 74 17 chr9 17795048 17795506 -106280666 + Lx LINE L1 4628 5117 -766 3 720 2283 195 17 96 chr9 17795525 17795997 -106280175 + L1_Mus2 LINE L1 692 1134 -5523 3 720 6494 54 4 6 chr9 17795997 17796819 -106279353 + L1Md_F2 LINE L1 5751 6570 -12 3 720 24496 133 35 12 chr9 17796819 17802131 -106274041 + L1_Mus2 LINE L1 1135 6560 -6 3 720 9013 135 15 5 chr9 17802138 17804546 -106271626 + L1_Mus3 LINE L1 4214 6636 -2 3 720 5343 176 35 3 chr9 17804575 17805623 -106270549 + Lx LINE L1 5100 6203 -451 3 720 234 0 0 0 chr9 17805623 17805649 -106270523 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 720 5343 171 49 5 chr9 17805649 17806093 -106270079 + Lx LINE L1 6204 6643 -11 3 720 183 42 0 0 chr9 17806093 17806117 -106270055 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 720 534 217 201 18 chr9 17806144 17806313 -106269859 + RMER1B Other Other 853 1052 -14 3 720 441 240 0 47 chr9 17806390 17806517 -106269655 + RMER15 LTR ERVL 131 251 -324 3 720 398 192 0 0 chr9 17806532 17806605 -106269567 + RMER15 LTR ERVL 392 464 -111 3 720 432 0 0 0 chr9 17806605 17806653 -106269519 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 720 786 129 5 43 chr9 17806670 17806856 -106269316 + GA-rich Low_complexity Low_complexity 1 179 0 3 720 212 0 36 0 chr9 17809069 17809097 -106267075 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3 720 2271 162 5 11 chr9 17809097 17809478 -106266694 - Lx4A LINE L1 -2 7056 6678 3 720 1309 132 14 5 chr9 17809481 17809694 -106266478 + Lx4A LINE L1 6457 6671 -387 3 720 243 197 98 0 chr9 17810167 17810228 -106265944 + MIRm SINE MIR 104 170 -106 4 720 260 314 102 47 chr9 17810765 17810892 -106265280 - RSINE1 SINE B4 -17 148 15 4 720 247 337 60 0 chr9 17811304 17811387 -106264785 - PB1D10 SINE Alu -24 93 6 4 720 1539 309 56 11 chr9 17812264 17812872 -106263300 - Lx8 LINE L1 -135 7338 6704 4 720 1733 245 73 13 chr9 17812873 17813258 -106262914 + MTD LTR MaLR 4 411 -8 4 720 389 248 39 10 chr9 17813260 17813362 -106262810 - Lx8 LINE L1 -779 6694 6590 4 720 36040 23 2 9 chr9 17813450 17819482 -106256690 + L1Md_A LINE L1 1 5586 -297 4 720 8640 18 9 0 chr9 17819482 17820469 -106255703 + L1Md_A LINE L1 5587 6582 0 4 720 662 317 25 10 chr9 17820480 17820684 -106255488 + B3 SINE B2 10 216 0 4 720 349 335 56 67 chr9 17820739 17821024 -106255148 - L2 LINE L2 -953 2466 2185 4 720 339 366 34 23 chr9 17821071 17821247 -106254925 - MLT1C LTR MaLR -5 462 285 4 720 948 82 0 0 chr9 17821429 17821563 -106254609 - L1_Mus1 LINE L1 -1 6566 6433 4 720 423 289 109 26 chr9 17821883 17822150 -106254022 + L1M5 LINE L1 2876 3164 -2982 4 720 297 51 0 0 chr9 17822285 17822324 -106253848 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 720 22 35 0 0 chr9 17823164 17823193 -106252979 + AT_rich Low_complexity Low_complexity 1 29 0 4 720 360 0 0 0 chr9 17823389 17823429 -106252743 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 720 782 335 44 18 chr9 17824292 17824635 -106251537 - MLT1A0 LTR MaLR -9 356 5 4 721 576 0 0 0 chr9 17828077 17828141 -106248031 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 721 234 0 0 0 chr9 17828141 17828166 -106248006 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 721 508 65 13 13 chr9 17829173 17829251 -106246921 + (AGGGGG)n Simple_repeat Simple_repeat 6 83 0 4 721 411 113 0 0 chr9 17830367 17830429 -106245743 + (CATA)n Simple_repeat Simple_repeat 2 63 0 4 721 1344 101 16 0 chr9 17830846 17831035 -106245137 - B2_Mm2 SINE B2 -3 192 1 4 721 466 371 18 6 chr9 17831045 17831213 -106244959 + Tigger7 DNA MER2_type 7 176 -2315 4 721 260 326 11 0 chr9 17831656 17831745 -106244427 + L1MC3 LINE L1 6729 6818 -967 4 721 320 328 40 8 chr9 17831877 17832003 -106244169 + L1MC3 LINE L1 7008 7137 -648 4 721 444 247 51 26 chr9 17832295 17832490 -106243682 + L1MC3 LINE L1 7568 7767 -18 4 721 248 77 26 0 chr9 17832621 17832660 -106243512 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 4 721 3472 23 2 0 chr9 17832672 17833067 -106243105 + MTA_Mm LTR MaLR 1 396 0 4 721 714 87 0 0 chr9 17833067 17833170 -106243002 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 4 721 315 0 0 0 chr9 17833227 17833262 -106242910 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 721 1758 50 46 4 chr9 17833620 17833860 -106242312 + L1Md_F3 LINE L1 6335 6584 0 4 721 20535 113 5 21 chr9 17834152 17837757 -106238415 - L1_Mus1 LINE L1 -369 6198 2657 4 721 8793 130 33 75 chr9 17837750 17838055 -106238117 + L1_Mur2 LINE L1 1557 1859 -4018 4 721 5314 142 50 34 chr9 17838055 17838998 -106237174 - RMER17B LTR ERVK 0 958 1 4 721 8793 130 33 75 chr9 17838998 17839887 -106236285 + L1_Mur2 LINE L1 1860 2633 -3244 4 721 279 54 0 0 chr9 17839887 17839924 -106236248 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 721 8793 130 33 75 chr9 17839924 17840595 -106235577 + L1_Mur2 LINE L1 2634 3345 -2532 4 721 2370 139 9 23 chr9 17840610 17841037 -106235135 + L1_Mur2 LINE L1 4023 4443 -1434 4 721 1014 33 0 0 chr9 17841038 17841160 -106235012 + (GGAGA)n Simple_repeat Simple_repeat 4 125 0 4 721 706 148 7 0 chr9 17841160 17841302 -106234870 + MusHAL1 LINE L1 313 455 -2257 4 721 4615 191 14 7 chr9 17841305 17842140 -106234032 + Lx4A LINE L1 6092 6932 -126 4 721 22 0 0 0 chr9 17842183 17842205 -106233967 + AT_rich Low_complexity Low_complexity 1 22 0 4 721 402 21 0 0 chr9 17842596 17842643 -106233529 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 721 1310 296 67 33 chr9 17843803 17843835 -106232337 - Lx8 LINE L1 -5 7468 7440 4 721 210 91 0 0 chr9 17843835 17843868 -106232304 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 721 1310 296 67 33 chr9 17843868 17844374 -106231798 - Lx8 LINE L1 -34 7439 6912 4 721 1193 186 57 46 chr9 17844542 17844878 -106231294 - Lx7 LINE L1 -60 7636 7107 4 721 478 165 28 0 chr9 17844937 17845046 -106231126 - L1_Mus4 LINE L1 -7 6629 6518 4 721 3740 261 22 13 chr9 17845054 17845920 -106230252 - Lx5 LINE L1 -31 7019 6146 4 721 2066 238 65 28 chr9 17845920 17846490 -106229682 + RLTR17 LTR ERVK 1 591 -101 4 721 338 250 93 20 chr9 17846577 17846728 -106229444 - Lx5 LINE L1 -934 6116 5955 4 721 39 0 0 0 chr9 17846730 17846769 -106229403 + AT_rich Low_complexity Low_complexity 1 39 0 4 721 1720 104 0 12 chr9 17847144 17847396 -106228776 + RLTR9E LTR ERVK 1 249 -160 4 721 349 303 56 21 chr9 17847468 17847701 -106228471 - L1_Mur2 LINE L1 -2187 3956 3716 4 721 366 279 143 35 chr9 17847763 17848090 -106228082 - L1_Mur2 LINE L1 -3258 2885 2494 4 721 4346 117 46 0 chr9 17848303 17848668 -106227504 - Lx3_Mus LINE L1 -717 6292 5923 4 721 257 0 30 0 chr9 17848668 17848701 -106227471 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 4 721 27824 103 14 92 chr9 17848701 17853140 -106223032 - Lx3_Mus LINE L1 -1087 5922 1887 4 721 4206 35 0 2 chr9 17853140 17853634 -106222538 - MT2_Mm LTR ERVL 0 493 1 4 721 27824 103 14 93 chr9 17853634 17854086 -106222086 - Lx3_Mus LINE L1 -4000 1886 1429 4 721 252 0 0 0 chr9 17854086 17854114 -106222058 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 721 27824 173 74 46 chr9 17854114 17855180 -106220992 - Lx3_Mus LINE L1 -4458 1428 5 4 721 7610 175 37 10 chr9 17855182 17856535 -106219637 + Lx4A LINE L1 5666 7055 -3 4 721 300 53 0 0 chr9 17856535 17856573 -106219599 + (TAG)n Simple_repeat Simple_repeat 1 38 0 4 721 27 70 0 14 chr9 17856573 17856624 -106219548 + AT_rich Low_complexity Low_complexity 1 51 0 4 721 829 171 14 0 chr9 17856624 17856770 -106219402 + B1_Mus1 SINE Alu 1 148 0 4 721 27 70 0 14 chr9 17856770 17856791 -106219381 + AT_rich Low_complexity Low_complexity 1 21 0 4 721 568 319 25 132 chr9 17857992 17858234 -106217938 + ID_B1 SINE B4 6 221 -3 4 721 1288 125 16 0 chr9 17859105 17859297 -106216875 + B2_Mm2 SINE B2 1 195 0 4 721 396 0 0 0 chr9 17859709 17859753 -106216419 + (TAG)n Simple_repeat Simple_repeat 1 44 0 4 721 684 0 0 0 chr9 17860869 17860945 -106215227 + (GAA)n Simple_repeat Simple_repeat 3 78 0 4 721 1257 88 0 0 chr9 17860945 17861265 -106214907 + (GGA)n Simple_repeat Simple_repeat 1 320 0 4 721 606 28 0 0 chr9 17861347 17861419 -106214753 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 4 721 14654 149 20 12 chr9 17861423 17864811 -106211361 + L1VL4 LINE L1 503 3885 -2258 4 721 37879 15 0 8 chr9 17864812 17869978 -106206194 + L1Md_A LINE L1 465 5586 -297 4 721 8842 12 0 0 chr9 17869978 17870974 -106205198 + L1Md_A LINE L1 5587 6582 0 4 721 37879 12 0 1 chr9 17870974 17870989 -106205183 + L1Md_A LINE L1 5587 5599 -284 4 721 14639 12 1 0 chr9 17870989 17872665 -106203507 + L1Md_A LINE L1 3910 5586 -297 4 721 8663 18 0 1 chr9 17872665 17873662 -106202510 + L1Md_A LINE L1 5587 6582 0 4 721 10446 173 14 10 chr9 17873662 17876445 -106199727 + Lx LINE L1 3843 6648 -6 4 721 362 330 56 30 chr9 17876486 17876720 -106199452 + MuLV-int LTR ERV1 7287 7526 -80 4 721 1960 82 144 17 chr9 17876817 17877164 -106199008 + RLTR47_MM LTR ERV1 1 391 -141 4 721 26 0 0 0 chr9 17877385 17877411 -106198761 + AT_rich Low_complexity Low_complexity 1 26 0 4 721 1206 330 9 6 chr9 17877720 17878064 -106198108 + MTE2b LTR MaLR 23 367 -12 4 721 1057 278 49 16 chr9 17878080 17878387 -106197785 + MTE2b-int LTR MaLR 11 327 -1253 4 721 1099 104 0 11 chr9 17880206 17880381 -106195791 + (TTCC)n Simple_repeat Simple_repeat 4 176 0 4 721 3688 212 47 20 chr9 17881811 17882061 -106194111 - L1_Mur3 LINE L1 -3576 2304 2067 4 721 198 71 0 0 chr9 17882061 17882089 -106194083 + (TGG)n Simple_repeat Simple_repeat 1 28 0 4 721 3688 212 47 20 chr9 17882089 17882855 -106193317 - L1_Mur3 LINE L1 -3814 2066 1260 4 721 337 19 0 0 chr9 17882855 17882908 -106193264 - L1_Mus4 LINE L1 -2 6634 6582 4 721 2286 99 106 5 chr9 17882908 17883275 -106192897 - RLTR9E LTR ERVK 0 409 6 4 721 524 79 0 13 chr9 17883291 17883368 -106192804 - ETnERV2-int LTR ERVK 0 7406 7331 4 721 1358 118 15 5 chr9 17883586 17883782 -106192390 - ETnERV2-int LTR ERVK -984 6422 6225 4 721 2649 198 84 87 chr9 17883822 17884934 -106191238 - ETnERV2-int LTR ERVK -1703 3141 2356 4 721 15195 104 29 1 chr9 17884922 17886721 -106189451 - ETnERV2-int LTR ERVK -1644 5762 3932 4 721 495 0 0 0 chr9 17886721 17886776 -106189396 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 721 15195 104 29 1 chr9 17886776 17887113 -106189059 - ETnERV2-int LTR ERVK -3475 3931 3567 4 721 39579 35 0 0 chr9 17887132 17892545 -106183627 - L1Md_T LINE L1 0 6582 1170 4 721 5732 152 34 40 chr9 17892551 17893665 -106182507 - L1Md_T LINE L1 -5411 1205 99 4 721 856 96 64 0 chr9 17893694 17893819 -106182353 - ETnERV2-int LTR ERVK -3833 3573 3441 4 721 248 16 115 0 chr9 17894100 17894161 -106182011 + (CAGC)n Simple_repeat Simple_repeat 1 68 0 4 721 5488 127 49 18 chr9 17894162 17895108 -106181064 - ETnERV2-int LTR ERVK -3958 3448 1995 4 721 275 180 20 0 chr9 17895132 17895182 -106180990 - ETnERV2-int LTR ERVK -5320 2086 2036 4 721 2132 66 0 3 chr9 17895182 17895469 -106180703 - ORR1A1 LTR MaLR 0 346 61 4 721 3534 46 2 0 chr9 17895465 17895944 -106180228 - ORR1A1-int LTR MaLR -1312 480 1 4 721 2573 50 0 0 chr9 17895948 17896286 -106179886 - ORR1A1 LTR MaLR -8 338 1 4 721 4697 151 66 29 chr9 17896287 17897221 -106178951 - ETnERV2-int LTR ERVK -5367 2039 1071 4 721 675 247 196 58 chr9 17897231 17897558 -106178614 - ETnERV2-int LTR ERVK -2927 387 16 4 721 2594 101 54 10 chr9 17897574 17897966 -106178206 - RLTR9E LTR ERVK 0 409 1 4 721 27016 93 20 1 chr9 17897966 17902322 -106173850 - L1_Mus3 LINE L1 -49 6589 2162 4 721 6363 131 20 13 chr9 17902804 17904639 -106171533 - L1_Mus3 LINE L1 -3764 2119 273 4 721 5045 114 31 15 chr9 17904642 17905926 -106170246 - L1Md_F LINE L1 -4226 1657 353 4 721 7346 106 35 33 chr9 17905928 17906854 -106169318 - L1VL2 LINE L1 -1434 2181 1259 4 721 3219 103 19 2 chr9 17906854 17907320 -106168852 - L1_Mus2 LINE L1 -1 6565 6092 4 721 7346 149 22 30 chr9 17907320 17908526 -106167646 - L1VL2 LINE L1 -2357 1258 58 4 721 867 245 51 41 chr9 17908521 17908972 -106167200 - L1_Mur3 LINE L1 -5817 1253 860 4 721 2753 220 17 9 chr9 17909956 17910530 -106165642 + Lx6 LINE L1 6159 6737 -723 4 721 678 97 0 0 chr9 17910530 17910643 -106165529 + (GA)n Simple_repeat Simple_repeat 2 114 0 4 721 530 221 8 69 chr9 17910644 17910775 -106165397 + Lx6 LINE L1 6757 6879 -581 4 721 320 44 67 0 chr9 17910809 17910854 -106165318 + HAL1-3A_ME LINE L1 1975 2022 -836 4 721 285 280 30 10 chr9 17911114 17911215 -106164957 - L1MB8 LINE L1 -36 6142 6040 4 721 252 355 16 134 chr9 17911239 17911486 -106164686 + B4A SINE B4 4 221 -71 4 721 678 150 206 13 chr9 17912227 17912382 -106163790 + B2_Mm2 SINE B2 4 188 -7 4 721 213 233 11 53 chr9 17912627 17912722 -106163450 + A-rich Low_complexity Low_complexity 5 95 0 4 721 30 45 0 0 chr9 17913888 17913932 -106162240 + AT_rich Low_complexity Low_complexity 1 44 0 4 721 254 314 128 0 chr9 17914119 17914221 -106161951 - B3A SINE B2 -18 180 66 4 721 2442 171 14 69 chr9 17914631 17915126 -106161046 + Lx2B LINE L1 5880 6347 -653 4 721 7720 87 4 1 chr9 17916060 17917758 -106158414 - L1_Mus1 LINE L1 -1 6566 4863 4 721 3974 163 3 1 chr9 17917758 17918423 -106157749 + Lx2B LINE L1 6334 6999 -1 4 721 356 314 91 23 chr9 17918651 17918827 -106157345 - MLT1F-int LTR MaLR -90 1399 1212 4 721 832 53 9 0 chr9 17918838 17919001 -106157171 + L1_Mus1 LINE L1 6445 6567 0 4 721 264 272 11 6 chr9 17920069 17920171 -106156001 - PB1 SINE Alu -8 119 10 4 721 25 31 0 0 chr9 17920217 17920249 -106155923 + AT_rich Low_complexity Low_complexity 1 32 0 4 721 251 257 40 0 chr9 17920253 17920327 -106155845 - L1M5 LINE L1 -372 5752 5676 5 721 1051 232 37 118 chr9 17920766 17921225 -106154947 - RMER13B LTR ERVK 0 908 487 5 721 362 244 17 0 chr9 17921327 17921446 -106154726 - Lx9 LINE L1 -4 7640 7520 5 721 8178 30 0 7 chr9 17921441 17923051 -106153121 - L1Md_T LINE L1 -2 6580 4985 5 721 7907 34 0 0 chr9 17923097 17924011 -106152161 - L1Md_T LINE L1 0 6582 5669 5 721 2178 111 224 46 chr9 17924120 17924601 -106151571 + RLTR6_Mm LTR ERV1 37 603 -51 5 721 67984 17 17 1 chr9 17924602 17932254 -106143918 + RLTR6-int LTR ERV1 1 7778 0 5 721 2145 115 229 42 chr9 17932363 17932835 -106143337 + RLTR6_Mm LTR ERV1 37 596 -58 5 721 554 16 0 0 chr9 17932835 17932898 -106143274 - L1Md_T LINE L1 -223 5660 5598 5 721 8366 20 1 0 chr9 17932898 17933849 -106142323 + L1Md_T LINE L1 4629 5580 -303 5 721 8146 36 2 0 chr9 17933847 17934814 -106141358 - L1Md_T LINE L1 -885 4998 4030 5 721 2679 113 28 8 chr9 17934841 17935233 -106140939 + MTB LTR MaLR 1 400 0 5 721 888 225 50 85 chr9 17935318 17935576 -106140596 - Lx5 LINE L1 0 7050 6802 5 721 1360 204 96 18 chr9 17935579 17935964 -106140208 + RMER5 LTR ERV1 120 534 0 5 721 8662 29 1 0 chr9 17936257 17937647 -106138525 - L1Md_A LINE L1 0 6582 5191 5 721 467 297 21 28 chr9 17938031 17938173 -106137999 - B1_Mur4 SINE Alu 0 150 10 5 721 989 236 14 0 chr9 17938196 17938408 -106137764 - B3 SINE B2 -1 215 1 5 721 6634 142 16 19 chr9 17941138 17941804 -106134368 - Lx2 LINE L1 -337 6660 5986 5 721 5427 140 63 10 chr9 17941804 17942711 -106133461 - RMER17B LTR ERVK 0 958 4 5 721 6634 144 16 18 chr9 17942711 17943159 -106133013 - Lx2 LINE L1 -1012 5985 5544 5 721 2056 117 31 3 chr9 17943160 17943485 -106132687 + Lx2 LINE L1 6663 6996 -1 5 721 224 30 30 0 chr9 17943490 17943523 -106132649 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 721 875 281 98 117 chr9 17943638 17944024 -106132148 + MTD LTR MaLR 1 419 0 5 721 1150 45 0 0 chr9 17944596 17944730 -106131442 + B1_Mus2 SINE Alu 1 134 -13 5 721 234 0 0 0 chr9 17944730 17944756 -106131416 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 5 721 2192 102 12 38 chr9 17944906 17945252 -106130920 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 721 6653 34 3 17 chr9 17945254 17946116 -106130056 - IAPEz-int LTR ERVK -2 6479 5630 5 721 12514 51 81 20 chr9 17946102 17949012 -106127160 - IAPEz-int LTR ERVK -3405 3076 3 5 721 2192 102 12 38 chr9 17949014 17949360 -106126812 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 721 1251 144 27 9 chr9 17949360 17949584 -106126588 - Lx3A LINE L1 -28 6953 6726 5 721 839 207 33 55 chr9 17949585 17949856 -106126316 + Lx9 LINE L1 7373 7637 -7 5 721 25 65 0 0 chr9 17949858 17949904 -106126268 + AT_rich Low_complexity Low_complexity 1 46 0 5 721 33 25 0 0 chr9 17950183 17950223 -106125949 + AT_rich Low_complexity Low_complexity 1 40 0 5 721 7301 97 4 4 chr9 17950322 17951535 -106124637 + L1_Mus3 LINE L1 5411 6626 -12 5 721 25813 150 22 10 chr9 17951666 17955742 -106120430 + L1_Mus3 LINE L1 609 4627 -1256 5 721 261 0 0 0 chr9 17955742 17955771 -106120401 + (TAA)n Simple_repeat Simple_repeat 2 30 0 5 90 25813 118 11 9 chr9 17955771 17957199 -106118973 + L1_Mus3 LINE L1 4628 6078 -560 5 722 1643 126 149 0 chr9 17957190 17957499 -106118673 + L1_Mus3 LINE L1 6279 6633 -5 5 722 272 339 22 70 chr9 17957740 17957907 -106118265 - MLT1E3 LTR MaLR -126 554 361 5 722 5811 153 14 9 chr9 17958700 17959713 -106116459 - Lx LINE L1 -1 6653 5636 5 722 349 329 14 7 chr9 17960139 17960277 -106115895 + A-rich Low_complexity Low_complexity 5 143 0 5 722 33852 35 0 0 chr9 17960438 17965653 -106110519 + L1Md_T LINE L1 278 5589 -297 5 722 8974 7 0 0 chr9 17965653 17966679 -106109493 + L1Md_T LINE L1 5590 6585 0 5 722 547 209 120 24 chr9 17966848 17966967 -106109205 - Lx9 LINE L1 -5 7639 7520 5 722 1212 220 33 79 chr9 17966967 17967194 -106108978 - RMER17C LTR ERVK 0 410 189 5 722 1620 0 0 0 chr9 17967194 17967374 -106108798 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 722 1212 220 33 79 chr9 17967374 17967576 -106108596 - RMER17C LTR ERVK -222 188 1 5 722 547 209 120 24 chr9 17967576 17967706 -106108466 - Lx9 LINE L1 -125 7519 7366 5 722 5370 83 16 0 chr9 17967967 17968714 -106107458 + Lx3_Mus LINE L1 6242 7000 -9 5 722 27 49 0 0 chr9 17970501 17970542 -106105630 + AT_rich Low_complexity Low_complexity 1 41 0 5 722 334 293 36 68 chr9 17971252 17971472 -106104700 - L1MC5 LINE L1 -296 7665 7453 5 722 2699 70 3 6 chr9 17971759 17972120 -106104052 + L1Md_F2 LINE L1 6223 6582 0 5 722 5502 93 21 7 chr9 17972306 17973789 -106102383 - L1VL2 LINE L1 -1991 1624 116 5 722 310 326 159 26 chr9 17973882 17974115 -106102057 - L1ME2 LINE L1 -223 5941 5678 5 722 352 350 68 39 chr9 17974122 17974327 -106101845 - B3 SINE B2 -1 215 5 5 722 423 0 0 0 chr9 17974455 17974502 -106101670 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 5 722 251 326 41 7 chr9 17974659 17974804 -106101368 - L1ME2 LINE L1 -488 5691 5542 5 722 402 305 29 0 chr9 17974879 17974984 -106101188 + RSINE1 SINE B4 1 108 -57 5 722 914 275 109 34 chr9 17975078 17975359 -106100813 + RMER5 LTR ERV1 63 364 -170 5 722 2260 113 3 0 chr9 17975359 17975685 -106100487 - ORR1A2 LTR MaLR 0 327 1 5 722 914 275 109 34 chr9 17975685 17975723 -106100449 + RMER5 LTR ERV1 365 406 -128 5 722 423 305 35 21 chr9 17976025 17976169 -106100003 + RMER5 LTR ERV1 389 534 0 5 722 358 311 10 26 chr9 17976231 17976426 -106099746 - L1MC LINE L1 -2318 5467 5276 5 722 237 301 0 14 chr9 17977201 17977275 -106098897 + CT-rich Low_complexity Low_complexity 4 76 0 5 722 1999 250 138 58 chr9 17977397 17978995 -106097177 - RMER1B Other Other -11 1055 16 5 722 225 0 0 0 chr9 17979616 17979641 -106096531 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 722 477 0 0 0 chr9 17979641 17979693 -106096479 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 722 32 0 0 0 chr9 17980243 17980275 -106095897 + AT_rich Low_complexity Low_complexity 1 32 0 5 722 516 72 0 0 chr9 17981391 17981460 -106094712 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 722 16718 91 20 5 chr9 17982277 17985111 -106091061 + L1VL4 LINE L1 626 3502 -57 5 722 1399 182 71 73 chr9 17985437 17985805 -106090367 - RMER2 LTR ERV1 -2 565 199 5 722 341 300 63 9 chr9 17986275 17986386 -106089786 + PB1D10 SINE Alu 1 117 0 5 722 242 359 81 92 chr9 17986970 17987231 -106088941 - ORR1E LTR MaLR -4 355 98 5 722 412 182 13 0 chr9 17987361 17987438 -106088734 + URR1B DNA MER1_type 148 225 0 5 722 2711 38 0 3 chr9 17987774 17988095 -106088077 + RLTRETN_Mm LTR ERVK 1 320 -2 5 722 16555 25 0 4 chr9 17988095 17990122 -106086050 + MMETn-int LTR ERVK 2 2019 -2825 5 722 38975 13 0 6 chr9 17990128 17996526 -106079646 - L1Md_A LINE L1 0 6582 227 5 722 21085 40 31 10 chr9 17996530 17999305 -106076867 + MMETn-int LTR ERVK 2012 4844 0 5 722 2715 34 0 3 chr9 17999305 17999628 -106076544 + RLTRETN_Mm LTR ERVK 1 322 0 5 722 1183 68 7 0 chr9 17999664 17999810 -106076362 + B1_Mus2 SINE Alu 1 147 0 5 722 383 0 0 142 chr9 17999810 17999923 -106076249 + (CAAAAA)n Simple_repeat Simple_repeat 5 101 0 5 722 21 36 0 0 chr9 18000560 18000588 -106075584 + AT_rich Low_complexity Low_complexity 1 28 0 1 722 564 179 10 56 chr9 18000761 18000956 -106075216 - Lx9 LINE L1 -1 7643 7458 2 722 209 30 0 57 chr9 18001106 18001141 -106075031 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 3 722 25 51 0 0 chr9 18001182 18001221 -106074951 + AT_rich Low_complexity Low_complexity 1 39 0 4 722 395 257 27 9 chr9 18001550 18001660 -106074512 + L3b LINE CR1 150 261 -221 5 722 1095 275 108 17 chr9 18002150 18002257 -106073915 + Lx8 LINE L1 5124 5230 -650 6 722 433 32 16 16 chr9 18002257 18002321 -106073851 + (TA)n Simple_repeat Simple_repeat 1 64 0 7 722 1095 271 78 12 chr9 18002321 18002778 -106073394 + Lx8 LINE L1 5231 5741 -1955 6 722 779 314 98 20 chr9 18002757 18003298 -106072874 + Lx8 LINE L1 6202 6784 -689 6 722 263 221 98 22 chr9 18003594 18003684 -106072488 + PB1D10 SINE Alu 36 137 -12 8 722 29 47 0 0 chr9 18003956 18003999 -106072173 + AT_rich Low_complexity Low_complexity 1 43 0 9 722 2861 93 14 0 chr9 18004252 18004680 -106071492 - L1_Mus2 LINE L1 -411 6155 5722 1 722 6864 99 17 6 chr9 18004679 18006202 -106069970 - L1_Mus1 LINE L1 0 6654 5041 1 722 2530 100 11 3 chr9 18006202 18006608 -106069564 + L1_Mus2 LINE L1 6178 6566 0 1 722 369 174 0 0 chr9 18006610 18006679 -106069493 + GA-rich Low_complexity Low_complexity 3 71 0 1 722 873 114 0 0 chr9 18006679 18006811 -106069361 + (GAAA)n Simple_repeat Simple_repeat 4 135 0 1 722 377 235 63 6 chr9 18006811 18006986 -106069186 + L1Md_F LINE L1 223 550 -6087 1 722 2586 194 46 26 chr9 18007023 18007769 -106068403 + L1Md_F LINE L1 526 1331 -5306 1 722 1729 118 7 4 chr9 18007760 18008041 -106068131 - L1_Mm LINE L1 -1054 4829 4548 1 722 309 210 36 24 chr9 18008046 18008129 -106068043 - L1MC LINE L1 -847 5486 5403 1 722 569 317 334 30 chr9 18008138 18008537 -106067635 - MLT2B3 LTR ERVL -14 553 22 1 722 652 291 39 34 chr9 18008650 18009091 -106067081 + L1MC LINE L1 4956 5398 -748 1 722 22 35 0 0 chr9 18009234 18009263 -106066909 + AT_rich Low_complexity Low_complexity 1 29 0 2 722 956 131 0 0 chr9 18009273 18009410 -106066762 - B1_Mus1 SINE Alu -10 138 2 2 722 369 0 0 0 chr9 18009411 18009452 -106066720 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 2 722 1713 262 43 87 chr9 18009452 18010130 -106066042 + Lx9 LINE L1 6448 7095 -549 2 722 311 121 30 0 chr9 18010506 18010572 -106065600 + (TCTCTG)n Simple_repeat Simple_repeat 4 71 0 2 722 302 45 23 0 chr9 18011333 18011377 -106064795 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 722 1093 80 0 0 chr9 18011377 18011515 -106064657 - B1_Mus2 SINE Alu -9 138 1 2 722 1645 221 74 26 chr9 18011936 18012464 -106063708 + BGLII_B LTR ERVK 3 432 -9 2 722 3068 92 2 0 chr9 18012465 18012911 -106063261 - L1_Mm LINE L1 -711 5172 4726 2 722 3658 143 32 37 chr9 18012913 18013313 -106062859 - RMER17A LTR ERVK 0 751 345 2 722 1081 78 12 0 chr9 18013313 18013479 -106062693 + (GGAGA)n Simple_repeat Simple_repeat 2 169 0 3 722 3658 143 32 37 chr9 18013479 18013816 -106062356 - RMER17A LTR ERVK -407 344 18 2 722 2681 31 9 27 chr9 18013985 18014318 -106061854 + IAPLTR2b LTR ERVK 1 327 0 3 722 256 365 73 0 chr9 18014444 18014540 -106061632 - MLT1A1 LTR MaLR -116 292 190 3 722 396 243 55 18 chr9 18014566 18014675 -106061497 - MLT1A1 LTR MaLR -295 113 1 3 722 2181 124 129 46 chr9 18015096 18015484 -106060688 - RLTR9B2 LTR ERVK 0 420 1 3 722 322 322 97 11 chr9 18015973 18016149 -106060023 - L1MEg LINE L1 -4107 1977 1787 3 722 26 0 0 0 chr9 18016471 18016497 -106059675 + AT_rich Low_complexity Low_complexity 1 26 0 3 722 832 142 52 0 chr9 18016690 18016824 -106059348 - B1_Mus1 SINE Alu -6 142 2 3 722 5814 97 13 2 chr9 18017065 18017930 -106058242 - L1_Mus2 LINE L1 0 6566 5693 3 722 12498 122 8 2 chr9 18017914 18019994 -106056178 - L1_Mus2 LINE L1 -615 5268 3177 3 722 625 141 0 0 chr9 18019992 18020091 -106056081 - MusHAL1 LINE L1 -2102 610 512 3 722 1006 99 0 0 chr9 18020095 18020237 -106055935 - B1_Mm SINE Alu 0 147 6 3 722 1245 94 5 0 chr9 18020244 18020445 -106055727 - MusHAL1 LINE L1 -2196 516 315 3 722 374 247 11 0 chr9 18020445 18020538 -106055634 - ORR1B2 LTR MaLR -273 94 1 4 722 381 130 89 25 chr9 18020545 18020624 -106055548 + MTC LTR MaLR 237 320 -101 4 722 26 50 0 0 chr9 18020632 18020672 -106055500 + AT_rich Low_complexity Low_complexity 1 40 0 4 722 1407 156 244 0 chr9 18020713 18021008 -106055164 + ORR1B2 LTR MaLR 1 367 0 4 722 1058 289 56 0 chr9 18021016 18021320 -106054852 + Lx9 LINE L1 6355 6675 -969 4 722 1134 253 59 24 chr9 18021371 18021744 -106054428 - Lx9 LINE L1 -127 7517 7132 4 722 227 312 0 0 chr9 18021743 18021852 -106054320 - L1M5 LINE L1 -443 5797 5689 4 722 4576 82 22 2 chr9 18021857 18022482 -106053690 - L1_Mus2 LINE L1 -2 6564 5927 4 722 7938 154 27 19 chr9 18022482 18024690 -106051482 - L1Md_F LINE L1 -3270 2613 387 4 722 3865 208 22 40 chr9 18024938 18025795 -106050377 - Lx5 LINE L1 -3 7047 6206 4 722 23 54 0 0 chr9 18025954 18025991 -106050181 + AT_rich Low_complexity Low_complexity 1 37 0 5 722 248 309 0 47 chr9 18026532 18026617 -106049555 - MTD LTR MaLR -319 100 20 5 722 2748 48 63 0 chr9 18026950 18027283 -106048889 - IAPEY2_LTR LTR ERVK -3 354 1 5 722 255 135 0 0 chr9 18027335 18027372 -106048800 + RLTR9C LTR ERVK 1 37 -356 5 722 863 182 18 139 chr9 18027377 18027715 -106048457 + MMETn-int LTR ERVK 144 440 -4404 5 722 3539 185 25 52 chr9 18027723 18028843 -106047329 + MMETn-int LTR ERVK 2375 3722 -1122 5 722 454 84 14 0 chr9 18029058 18029129 -106047043 + MMETn-int LTR ERVK 7331 7402 -4 5 722 2309 113 54 84 chr9 18029130 18029535 -106046637 + RLTR9C LTR ERVK 1 393 0 5 722 28 48 0 0 chr9 18030177 18030219 -106045953 + AT_rich Low_complexity Low_complexity 1 42 0 5 722 1091 248 70 33 chr9 18030228 18030528 -106045644 + ORR1E LTR MaLR 6 316 -43 5 722 774 308 51 44 chr9 18030842 18031158 -106045014 + MTE2a LTR MaLR 57 374 -5 5 722 234 250 0 20 chr9 18031849 18031898 -106044274 + L2c LINE L2 3285 3332 -55 5 722 25 51 0 0 chr9 18032058 18032097 -106044075 + AT_rich Low_complexity Low_complexity 1 39 0 5 722 252 0 0 0 chr9 18032345 18032373 -106043799 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 722 455 48 0 16 chr9 18032373 18032435 -106043737 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 722 289 348 71 0 chr9 18032820 18032932 -106043240 + PB1D9 SINE Alu 1 120 0 6 722 318 148 0 0 chr9 18033053 18033107 -106043065 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 722 669 303 43 5 chr9 18033230 18033567 -106042605 + MTEb LTR MaLR 3 371 -8 6 722 5542 139 29 3 chr9 18035726 18036618 -106039554 - Lx2A LINE L1 -4 7004 6090 6 722 451 214 0 67 chr9 18036947 18037052 -106039120 + L1VL1 LINE L1 29 126 -6296 6 722 338 246 119 7 chr9 18037171 18037314 -106038858 + L1Md_F LINE L1 578 736 -5783 6 722 1383 221 41 6 chr9 18037293 18037635 -106038537 + L1Md_F LINE L1 628 981 -5538 6 722 13628 65 4 4 chr9 18037632 18039531 -106036641 + L1Md_F2 LINE L1 2716 4614 -1269 6 722 36849 5 0 0 chr9 18039532 18044904 -106031268 + L1Md_A LINE L1 214 5586 -297 6 722 9065 3 0 0 chr9 18044904 18045900 -106030272 + L1Md_A LINE L1 5587 6582 0 6 722 7096 75 1 1 chr9 18045917 18046903 -106029269 + L1Md_F2 LINE L1 4601 5586 -297 6 722 7436 63 18 2 chr9 18046903 18047871 -106028301 + L1Md_F2 LINE L1 5587 6569 -13 6 722 3435 123 7 3 chr9 18047871 18048459 -106027713 + L1_Mm LINE L1 3576 4165 -1718 7 722 9089 19 1 0 chr9 18048459 18049534 -106026638 + RLTR6-int LTR ERV1 6703 7778 0 7 722 230 218 196 56 chr9 18049534 18049641 -106026531 + RLTR6_Mm LTR ERV1 1 122 -532 7 722 2448 83 235 26 chr9 18049643 18050098 -106026074 + RLTR6_Mm LTR ERV1 37 586 -68 7 722 480 281 49 17 chr9 18050098 18050346 -106025826 + Lx5 LINE L1 5898 6168 -1292 7 722 291 222 154 11 chr9 18050465 18050556 -106025616 + B1_Mus2 SINE Alu 3 106 -43 7 722 26222 51 5 0 chr9 18050556 18054347 -106021825 - L1Md_A LINE L1 -1145 4738 928 7 722 553 176 0 0 chr9 18054345 18054453 -106021719 - L1Md_A LINE L1 -6191 425 318 7 722 251 346 43 27 chr9 18056039 18056223 -106019949 - MIR SINE MIR -58 204 18 7 722 240 111 0 0 chr9 18056332 18056368 -106019804 + (TTG)n Simple_repeat Simple_repeat 3 38 0 7 722 218 333 18 0 chr9 18056369 18056426 -106019746 - ID4_ SINE ID -13 70 13 7 722 8327 114 41 11 chr9 18056457 18056560 -106019612 - Lx3_Mus LINE L1 -11 6998 6871 7 722 204 40 0 0 chr9 18056560 18056585 -106019587 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 8 722 8327 114 41 11 chr9 18056585 18057851 -106018321 - Lx3_Mus LINE L1 -139 6870 5588 7 722 13474 80 6 5 chr9 18057854 18059842 -106016330 + Lx3_Mus LINE L1 3601 5590 -296 7 722 199 376 34 62 chr9 18059856 18060032 -106016140 + L2 LINE L2 671 841 -2578 8 722 448 137 0 14 chr9 18060976 18061050 -106015122 + RLTR23 LTR ERV1 311 383 -47 8 722 180 0 0 0 chr9 18061656 18061676 -106014496 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 722 2428 235 108 63 chr9 18061904 18062865 -106013307 - RMER17B LTR ERVK -9 899 1 8 722 465 348 76 50 chr9 18062865 18063298 -106012874 - Kanga1 DNA Tc2 -982 763 302 8 722 1860 101 98 63 chr9 18063298 18063614 -106012558 + ORR1A2 LTR MaLR 1 327 0 8 722 315 351 80 65 chr9 18063614 18063711 -106012461 - Kanga1 DNA Tc2 -1444 301 216 8 722 683 246 142 0 chr9 18064207 18064390 -106011782 + B3 SINE B2 2 210 -6 8 722 1210 106 33 0 chr9 18064703 18064883 -106011289 + B2_Mm2 SINE B2 1 186 -9 8 722 8744 52 0 2 chr9 18065067 18066227 -106009945 + L1Md_F3 LINE L1 3925 5082 -801 8 722 35230 31 2 8 chr9 18066225 18071613 -106004559 + L1Md_T LINE L1 230 5586 -297 9 722 8538 31 0 0 chr9 18071613 18072609 -106003563 + L1Md_T LINE L1 5587 6582 0 9 722 258 32 0 0 chr9 18072754 18072785 -106003387 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 722 5908 54 5 6 chr9 18072785 18073749 -106002423 + L1Md_F3 LINE L1 5070 6029 -555 8 722 7271 40 5 5 chr9 18073749 18074636 -106001536 + L1Md_F2 LINE L1 5684 6570 -12 9 722 3483 46 4 2 chr9 18074636 18074648 -106001524 + L1Md_F3 LINE L1 6030 6041 -543 8 722 22 0 0 0 chr9 18074863 18074885 -106001287 + AT_rich Low_complexity Low_complexity 1 22 0 9 722 235 287 60 9 chr9 18074886 18075002 -106001170 + L1MD1 LINE L1 5727 5848 -511 9 722 2614 94 82 61 chr9 18075061 18075501 -106000671 + RMER16 LTR ERVK 85 533 0 9 722 2548 160 50 32 chr9 18075501 18076497 -105999675 - L1VL4 LINE L1 -2302 1257 256 9 722 2770 41 15 0 chr9 18076915 18077256 -105998916 + ORR1A1 LTR MaLR 1 346 0 9 722 267 264 30 97 chr9 18077256 18077390 -105998782 + L1MD1 LINE L1 6118 6242 0 9 722 593 272 45 75 chr9 18077407 18077606 -105998566 + B3A SINE B2 6 198 0 9 722 334 258 16 0 chr9 18079751 18079813 -105996359 + ID4_ SINE ID 12 74 -9 9 722 21 36 0 0 chr9 18080050 18080078 -105996094 + AT_rich Low_complexity Low_complexity 1 28 0 1 722 330 276 66 15 chr9 18080136 18080272 -105995900 + L1M2 LINE L1 5319 5461 -851 1 722 263 212 55 25 chr9 18080298 18080391 -105995781 + B1F1 SINE Alu 14 111 -6 1 722 258 156 0 0 chr9 18082467 18082512 -105993660 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 722 28 29 0 0 chr9 18082512 18082547 -105993625 + AT_rich Low_complexity Low_complexity 1 35 0 1 722 953 109 14 0 chr9 18083132 18083279 -105992893 + L1_Mus1 LINE L1 6171 6319 -248 1 722 2627 73 8 34 chr9 18083279 18083662 -105992510 + L1Md_F2 LINE L1 6209 6581 -1 1 722 238 339 116 41 chr9 18083894 18084066 -105992106 - LTR16C LTR ERVL 0 489 305 1 722 228 214 0 0 chr9 18084296 18084352 -105991820 - Lx8 LINE L1 -2 7471 7416 1 722 424 310 28 21 chr9 18084393 18084538 -105991634 - Lx8 LINE L1 -179 7294 7149 1 722 511 261 45 45 chr9 18085032 18085297 -105990875 + L1MA9 LINE L1 5644 5908 -404 1 722 559 124 11 0 chr9 18085416 18085505 -105990667 - ORR1C2 LTR MaLR 0 384 295 1 722 5388 145 38 37 chr9 18086054 18087214 -105988958 - L1VL1 LINE L1 -2501 1197 38 1 90 19984 119 29 2 chr9 18087215 18091193 -105984979 + L1_Mus3 LINE L1 2540 6624 -14 1 723 316 324 0 26 chr9 18091343 18091457 -105984715 + PB1D10 SINE Alu 7 117 0 1 723 1440 194 73 75 chr9 18092117 18092502 -105983670 + ORR1C2 LTR MaLR 1 384 0 1 723 1223 63 0 0 chr9 18092877 18093035 -105983137 + B2_Mm1t SINE B2 1 158 -35 1 723 338 0 24 0 chr9 18093035 18093077 -105983095 + (TAA)n Simple_repeat Simple_repeat 3 45 0 1 723 626 265 67 51 chr9 18093077 18093113 -105983059 + B3A SINE B2 163 198 0 1 723 901 262 110 40 chr9 18093183 18093537 -105982635 - Tigger6a DNA MER2_type -417 666 288 1 723 333 208 130 0 chr9 18094370 18094447 -105981725 + ID_B1 SINE B4 110 196 -28 1 723 611 245 79 0 chr9 18094567 18094706 -105981466 - RSINE1 SINE B4 -14 151 2 1 723 4284 55 27 14 chr9 18095309 18095866 -105980306 - LTRIS2 LTR ERV1 0 564 1 1 723 180 0 0 0 chr9 18098860 18098880 -105977292 + (TGG)n Simple_repeat Simple_repeat 1 20 0 1 723 227 125 0 0 chr9 18099285 18099325 -105976847 + Lx8 LINE L1 7434 7473 0 1 723 548 139 139 0 chr9 18099410 18099511 -105976661 + URR1B DNA MER1_type 107 221 -4 1 723 643 294 76 25 chr9 18100615 18100852 -105975320 + B4A SINE B4 5 253 -39 1 723 183 100 0 0 chr9 18101332 18101362 -105974810 + (TATG)n Simple_repeat Simple_repeat 3 32 0 1 723 1199 71 71 12 chr9 18102386 18102556 -105973616 + B2_Mm2 SINE B2 2 181 -14 1 723 198 0 0 0 chr9 18102556 18102578 -105973594 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 1 723 244 207 16 49 chr9 18104248 18104309 -105971863 + LTR50 LTR ERVL 416 474 -321 1 723 231 219 15 15 chr9 18104671 18104736 -105971436 + CT-rich Low_complexity Low_complexity 2 66 0 1 723 21 0 0 0 chr9 18105936 18105957 -105970215 + AT_rich Low_complexity Low_complexity 1 21 0 1 723 659 260 46 7 chr9 18106193 18106344 -105969828 - ID_B1 SINE B4 -56 168 12 1 723 1146 184 14 28 chr9 18107059 18107271 -105968901 - URR1B DNA MER1_type -15 210 2 1 723 650 232 119 21 chr9 18107843 18108037 -105968135 - B3 SINE B2 0 216 4 1 723 369 0 0 0 chr9 18108195 18108236 -105967936 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 723 21 0 0 0 chr9 18109102 18109123 -105967049 + AT_rich Low_complexity Low_complexity 1 21 0 1 723 263 241 10 121 chr9 18109284 18109383 -105966789 - PB1D10 SINE Alu -2 115 28 1 723 1231 48 7 0 chr9 18109466 18109613 -105966559 + B1_Mus1 SINE Alu 1 148 0 1 723 241 298 73 44 chr9 18109994 18110131 -105966041 - L2a LINE L2 -19 3407 3267 1 723 289 238 148 0 chr9 18110463 18110564 -105965608 - PB1D7 SINE Alu 0 120 5 1 723 1075 81 219 0 chr9 18111727 18111887 -105964285 - B2_Mm2 SINE B2 0 195 1 1 723 309 296 251 16 chr9 18111891 18112138 -105964034 - L1M5 LINE L1 -755 5391 5087 1 723 202 329 121 7 chr9 18113316 18113457 -105962715 - MIRc SINE MIR -8 260 104 1 723 235 265 116 66 chr9 18113514 18113635 -105962537 - PB1 SINE Alu 0 127 1 1 723 21 36 0 0 chr9 18113768 18113796 -105962376 + AT_rich Low_complexity Low_complexity 1 28 0 1 723 429 217 59 0 chr9 18114651 18114815 -105961357 + B3A SINE B2 1 216 0 1 723 615 62 0 0 chr9 18115628 18115708 -105960464 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 723 336 355 14 22 chr9 18115788 18115926 -105960246 - B4A SINE B4 -153 139 3 1 723 667 256 202 14 chr9 18118189 18118486 -105957686 + ORR1E LTR MaLR 1 353 -6 1 723 998 83 21 0 chr9 18119119 18119263 -105956909 + B1_Mus1 SINE Alu 2 148 0 1 723 247 262 116 7 chr9 18119784 18119930 -105956242 - L1MD3 LINE L1 -10 7985 7824 1 723 548 318 32 44 chr9 18120276 18120434 -105955738 + B3A SINE B2 1 156 -42 1 723 180 0 0 0 chr9 18120547 18120567 -105955605 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 723 201 74 0 0 chr9 18120567 18120594 -105955578 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 723 287 130 19 0 chr9 18121001 18121055 -105955117 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 723 239 288 61 24 chr9 18122213 18122295 -105953877 + MER5A DNA MER1_type 42 126 -63 1 723 444 248 230 59 chr9 18124014 18124175 -105951997 + MTE2a LTR MaLR 59 292 -87 1 723 3352 25 8 5 chr9 18124175 18124570 -105951602 - MTA_Mm LTR MaLR 0 396 1 1 723 444 227 15 85 chr9 18124570 18124654 -105951518 + MTE2a LTR MaLR 293 369 -10 1 723 455 318 58 77 chr9 18125172 18125482 -105950690 - Lx8 LINE L1 -1 7472 7169 1 723 607 305 68 0 chr9 18125581 18125771 -105950401 + B3 SINE B2 6 208 -8 1 723 847 290 131 22 chr9 18127002 18127453 -105948719 - Lx8 LINE L1 0 7473 6974 1 723 241 238 63 0 chr9 18127543 18127606 -105948566 - L1M3 LINE L1 -390 5793 5727 1 723 459 0 0 0 chr9 18128664 18128715 -105947457 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 723 483 254 214 9 chr9 18129536 18129697 -105946475 - B3 SINE B2 -13 203 29 1 723 934 108 39 133 chr9 18129699 18129902 -105946270 - B2_Mm2 SINE B2 -9 186 3 1 723 186 43 0 0 chr9 18130022 18130045 -105946127 + (TAG)n Simple_repeat Simple_repeat 1 23 0 1 723 485 286 114 45 chr9 18130147 18130367 -105945805 + L3 LINE CR1 4237 4471 -18 1 723 279 0 0 0 chr9 18131046 18131077 -105945095 + (A)n Simple_repeat Simple_repeat 1 31 0 1 723 306 321 0 23 chr9 18132095 18132181 -105943991 - B3A SINE B2 -16 182 99 1 723 181 240 39 20 chr9 18132348 18132399 -105943773 - L2a LINE L2 0 3426 3375 1 723 483 95 0 0 chr9 18132583 18132646 -105943526 + RMER1C Other Other 1113 1175 -167 1 723 207 0 0 0 chr9 18132650 18132673 -105943499 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 723 7023 126 44 20 chr9 18133375 18134544 -105941628 + Lx4A LINE L1 5862 7057 -1 1 723 323 254 0 0 chr9 18134897 18134960 -105941212 - PB1D7 SINE Alu -57 63 1 1 723 25 83 0 0 chr9 18135362 18135422 -105940750 + AT_rich Low_complexity Low_complexity 1 60 0 1 723 559 327 29 5 chr9 18136662 18136868 -105939304 - Tigger2b DNA MER2_type -166 560 350 1 723 210 37 0 0 chr9 18136870 18136897 -105939275 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 723 757 105 9 0 chr9 18136899 18137013 -105939159 - B2_Mm1t SINE B2 -1 192 78 1 723 821 227 123 9 chr9 18137013 18137329 -105938843 - Tigger2b DNA MER2_type -374 352 1 1 723 225 0 0 0 chr9 18137828 18137853 -105938319 + (CAAAC)n Simple_repeat Simple_repeat 4 28 0 1 723 1257 109 5 5 chr9 18137877 18138061 -105938111 + B2_Mm2 SINE B2 2 185 -10 1 723 328 213 93 0 chr9 18138105 18138180 -105937992 - ID_B1 SINE B4 0 224 143 1 723 594 66 2 27 chr9 18138192 18138300 -105937872 - B1_Mus2 SINE Alu -1 149 45 1 723 387 141 0 15 chr9 18138382 18138447 -105937725 - ID4_ SINE ID -15 68 5 1 723 248 291 13 0 chr9 18138828 18138907 -105937265 + L1MA4 LINE L1 5847 5926 -374 1 723 10430 27 2 1 chr9 18139746 18140975 -105935197 + L1Md_T LINE L1 4357 5586 -297 1 723 8534 28 0 0 chr9 18140975 18141971 -105934201 + L1Md_T LINE L1 5587 6582 0 1 723 207 0 0 0 chr9 18142048 18142071 -105934101 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 723 216 200 0 0 chr9 18142189 18142249 -105933923 + GA-rich Low_complexity Low_complexity 2 61 0 1 723 986 215 123 58 chr9 18142262 18142328 -105933844 + L1_Rod LINE L1 495 556 -6616 1 723 432 0 0 0 chr9 18142328 18142376 -105933796 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 723 986 215 123 58 chr9 18142376 18142635 -105933537 + L1_Rod LINE L1 557 841 -6331 1 723 2058 83 12 40 chr9 18142635 18142838 -105933334 + MTB LTR MaLR 1 192 -208 1 723 987 77 0 19 chr9 18142838 18142996 -105933176 + (GGAA)n Simple_repeat Simple_repeat 3 157 0 1 723 2058 83 12 40 chr9 18142996 18143118 -105933054 + MTB LTR MaLR 193 317 -83 1 723 406 221 62 62 chr9 18143224 18143384 -105932788 - B3A SINE B2 -21 174 3 1 723 722 199 13 40 chr9 18143476 18143628 -105932544 + B1_Mur3 SINE Alu 1 148 -1 1 723 213 39 0 0 chr9 18143643 18143669 -105932503 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 723 993 123 7 7 chr9 18144079 18144226 -105931946 + B1_Mm SINE Alu 1 147 0 1 723 330 147 0 0 chr9 18144228 18144296 -105931876 + (A)n Simple_repeat Simple_repeat 1 68 0 1 723 24 0 0 0 chr9 18144425 18144449 -105931723 + AT_rich Low_complexity Low_complexity 1 24 0 1 723 590 279 92 8 chr9 18144556 18144795 -105931377 + Lx8 LINE L1 5449 5707 -140 1 723 23 0 0 0 chr9 18144812 18144835 -105931337 + AT_rich Low_complexity Low_complexity 1 23 0 1 723 318 278 69 16 chr9 18144840 18144988 -105931184 + Lx8 LINE L1 5701 5869 -11 1 723 540 0 0 0 chr9 18144998 18145058 -105931114 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 723 1083 103 0 0 chr9 18145127 18145273 -105930899 + B1_Mus2 SINE Alu 2 147 0 2 723 6145 74 7 4 chr9 18145459 18146275 -105929897 - L1Md_F2 LINE L1 -12 6570 5752 2 723 40 0 0 0 chr9 18146275 18146315 -105929857 + AT_rich Low_complexity Low_complexity 1 40 0 2 723 331 286 113 7 chr9 18146339 18146480 -105929692 + RSINE1 SINE B4 4 159 -6 2 723 1196 49 6 9 chr9 18146480 18146659 -105929513 - L1_Mus2 LINE L1 -622 6016 5835 2 723 4321 56 8 36 chr9 18146659 18147164 -105929008 + L1_Mus2 LINE L1 5990 6495 -71 2 723 189 0 0 0 chr9 18147164 18147185 -105928987 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 723 4321 56 8 36 chr9 18147185 18147268 -105928904 + L1_Mus2 LINE L1 6496 6560 -6 2 723 937 229 14 19 chr9 18147287 18147496 -105928676 + B3 SINE B2 3 210 -6 2 723 1181 227 134 9 chr9 18147577 18147906 -105928266 + Lx7 LINE L1 7127 7496 -200 2 723 239 218 22 44 chr9 18147948 18148039 -105928133 + T-rich Low_complexity Low_complexity 1 89 0 2 723 426 272 0 64 chr9 18148175 18148285 -105927887 + Lx8 LINE L1 6263 6365 -1108 1 723 1463 247 81 0 chr9 18148289 18148621 -105927551 - ORR1D2 LTR MaLR -3 367 9 2 723 1243 325 274 24 chr9 18148627 18149175 -105926997 + Lx8 LINE L1 6361 7030 -443 1 723 2033 183 40 49 chr9 18149175 18149380 -105926792 + MTC LTR MaLR 1 206 -215 2 723 1234 34 0 0 chr9 18149380 18149527 -105926645 + B1_Mm SINE Alu 1 147 0 2 723 2033 183 40 49 chr9 18149527 18149746 -105926426 + MTC LTR MaLR 207 421 0 2 723 1243 335 125 27 chr9 18149746 18150079 -105926093 + Lx8 LINE L1 7031 7412 -61 1 723 1076 189 251 10 chr9 18150283 18150464 -105925708 + ORR1D1 LTR MaLR 2 242 -132 2 723 297 0 0 0 chr9 18150464 18150497 -105925675 + (CCTG)n Simple_repeat Simple_repeat 4 36 0 2 723 1076 189 251 10 chr9 18150497 18150614 -105925558 + ORR1D1 LTR MaLR 243 371 -3 2 723 522 46 0 0 chr9 18151182 18151247 -105924925 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 723 513 254 129 14 chr9 18151250 18151390 -105924782 - B3A SINE B2 -34 164 9 2 723 35 24 0 0 chr9 18152683 18152725 -105923447 + AT_rich Low_complexity Low_complexity 1 42 0 2 723 214 281 18 0 chr9 18152736 18152793 -105923379 + AluF_3 SINE Alu 139 196 -115 2 723 312 242 157 15 chr9 18152745 18152879 -105923293 + ID_B1 SINE B4 94 246 -46 2 723 1994 128 0 0 chr9 18152935 18153240 -105922932 - Lx LINE L1 -8 6646 6342 2 723 334 379 40 29 chr9 18153602 18153776 -105922396 + MER5A DNA MER1_type 13 188 -1 2 723 744 263 36 26 chr9 18153906 18154101 -105922071 + MTEa LTR MaLR 183 379 0 2 723 476 281 50 0 chr9 18154141 18154262 -105921910 - B1F2 SINE Alu -16 133 7 2 723 260 382 22 44 chr9 18154262 18154278 -105921894 - B4A SINE B4 -81 211 78 2 723 21 57 0 0 chr9 18154685 18154720 -105921452 + AT_rich Low_complexity Low_complexity 1 35 0 2 723 24 53 0 0 chr9 18155808 18155846 -105920326 + AT_rich Low_complexity Low_complexity 1 38 0 2 723 617 60 0 0 chr9 18156357 18156440 -105919732 + B1_Mus1 SINE Alu 1 83 -65 2 723 210 174 0 0 chr9 18156444 18156490 -105919682 + A-rich Low_complexity Low_complexity 1 46 0 2 723 6811 156 4 17 chr9 18156612 18157860 -105918312 + L1_Mur2 LINE L1 3452 4683 -1194 2 723 1691 134 73 46 chr9 18157863 18158192 -105917980 + Lx2 LINE L1 6660 6997 0 2 723 25 31 0 0 chr9 18158891 18158923 -105917249 + AT_rich Low_complexity Low_complexity 1 32 0 2 723 261 0 0 0 chr9 18158933 18158962 -105917210 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 723 244 280 125 17 chr9 18158971 18159091 -105917081 + LTR37A LTR ERV1 294 426 0 2 723 528 16 0 0 chr9 18159479 18159540 -105916632 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 723 1635 48 0 5 chr9 18159545 18159754 -105916418 - L1Md_F2 LINE L1 -11 6571 6364 2 723 217 250 21 0 chr9 18159754 18159802 -105916370 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 723 410 53 18 0 chr9 18159814 18159871 -105916301 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 723 531 293 29 0 chr9 18159890 18160030 -105916142 - B3A SINE B2 -54 144 1 2 723 21 0 0 0 chr9 18160157 18160178 -105915994 + AT_rich Low_complexity Low_complexity 1 21 0 2 723 727 204 0 52 chr9 18160494 18160649 -105915523 + B1_Mus1 SINE Alu 1 147 -1 2 723 32191 79 7 6 chr9 18160828 18166305 -105909867 + L1Md_F2 LINE L1 104 5586 -297 2 723 7913 51 0 5 chr9 18166305 18167294 -105908878 + L1Md_F2 LINE L1 5587 6570 -12 2 723 246 299 57 43 chr9 18168154 18168279 -105907893 - MIR SINE MIR -88 180 51 2 723 883 195 5 10 chr9 18169215 18169412 -105906760 + Lx6 LINE L1 4762 4957 -923 2 723 6637 224 98 17 chr9 18169426 18171375 -105904797 + Lx6 LINE L1 5343 7459 -1 2 723 587 317 51 19 chr9 18171376 18171691 -105904481 + L1M5 LINE L1 2866 3190 -2956 2 723 447 158 0 0 chr9 18171813 18171835 -105904337 + A-rich Low_complexity Low_complexity 1 22 0 2 723 363 101 512 12 chr9 18171835 18171915 -105904257 + PB1D9 SINE Alu 1 120 0 2 723 447 158 0 0 chr9 18171915 18171993 -105904179 + A-rich Low_complexity Low_complexity 23 100 0 2 723 12906 108 38 62 chr9 18172043 18175013 -105901159 + L1VL4 LINE L1 190 3105 -454 2 723 779 152 33 0 chr9 18174996 18175147 -105901025 + L1_Mur1 LINE L1 3571 3726 -2160 2 723 1425 148 7 26 chr9 18175147 18175268 -105900904 - L1_Mur2 LINE L1 -1375 4502 4387 2 723 4763 46 5 2 chr9 18175268 18175853 -105900319 - LTRIS_Mus LTR ERV1 0 587 1 2 723 1425 148 7 26 chr9 18175853 18176002 -105900170 - L1_Mur2 LINE L1 -1491 4386 4237 2 723 2415 151 0 0 chr9 18175999 18176391 -105899781 + L1_Mm LINE L1 5195 5586 -297 2 723 3846 202 7 8 chr9 18176393 18177147 -105899025 + ETnERV3-int LTR ERVK 5026 5778 -30 2 723 6186 103 98 0 chr9 18177162 18178055 -105898117 + RLTR13C1 LTR ERVK 3 983 0 2 723 422 326 134 40 chr9 18178327 18178783 -105897389 + L1MD LINE L1 4124 4622 -1524 2 723 186 43 0 0 chr9 18178803 18178826 -105897346 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 723 398 387 6 25 chr9 18178852 18179011 -105897161 + RSINE1 SINE B4 8 163 -2 2 723 224 182 71 18 chr9 18179153 18179209 -105896963 + B1_Mur4 SINE Alu 87 145 -5 2 723 315 241 0 0 chr9 18179285 18179339 -105896833 + Lx8 LINE L1 7281 7334 -139 2 723 411 316 80 36 chr9 18179348 18179361 -105896811 + B4 SINE B4 82 220 -67 2 723 607 169 133 17 chr9 18179361 18179481 -105896691 + B1_Mur2 SINE Alu 10 143 -6 2 723 274 276 68 48 chr9 18179496 18179599 -105896573 + Lx8 LINE L1 7359 7463 -10 2 723 272 241 140 4 chr9 18179824 18179972 -105896200 + L1M5 LINE L1 5712 5875 -304 2 723 665 143 38 0 chr9 18180169 18180274 -105895898 - B1_Mur4 SINE Alu -1 149 41 2 723 24 32 0 0 chr9 18180291 18180322 -105895850 + AT_rich Low_complexity Low_complexity 1 31 0 2 723 1640 31 0 0 chr9 18180324 18180516 -105895656 + B2_Mm1a SINE B2 2 193 0 2 723 2756 80 224 0 chr9 18181183 18181607 -105894565 + MURVY-LTR LTR ERV1 1 519 0 2 723 226 313 36 12 chr9 18182440 18182524 -105893648 - MIR SINE MIR -78 184 99 2 723 1318 112 25 36 chr9 18183227 18183522 -105892650 - L1_Mus1 LINE L1 -5 6579 6289 2 723 407 103 277 0 chr9 18183518 18183615 -105892557 + L1Md_F2 LINE L1 6462 6583 -1 2 723 626 224 192 46 chr9 18183614 18183963 -105892209 - Lx7 LINE L1 -122 7574 7175 2 723 200 333 76 38 chr9 18184627 18184758 -105891414 + L2c LINE L2 3054 3189 -198 2 723 292 304 0 0 chr9 18185032 18185101 -105891071 + B4A SINE B4 77 145 -147 2 723 535 328 0 0 chr9 18185047 18185181 -105890991 + B1F2 SINE Alu 7 140 -9 2 723 1231 88 55 6 chr9 18185565 18185747 -105890425 + B2_Mm2 SINE B2 1 191 -4 2 723 671 230 7 26 chr9 18185754 18185906 -105890266 - RMER10B LTR ERVL -56 342 194 2 723 665 24 12 0 chr9 18185921 18186004 -105890168 + (GAA)n Simple_repeat Simple_repeat 3 86 0 2 723 182 375 165 10 chr9 18186720 18186817 -105889355 - MIRc SINE MIR -118 150 39 2 723 333 106 0 0 chr9 18187321 18187368 -105888804 - ORR1B1 LTR MaLR -8 386 340 2 723 569 201 44 7 chr9 18187383 18187518 -105888654 - Lx3C LINE L1 -6 6970 6831 2 723 1047 64 43 0 chr9 18187566 18187706 -105888466 - B1_Mus1 SINE Alu -1 147 2 2 723 1557 199 90 30 chr9 18187706 18188038 -105888134 - ORR1B1 LTR MaLR -42 352 1 2 723 1469 234 72 16 chr9 18188068 18188454 -105887718 + MTD LTR MaLR 12 419 0 2 723 24 32 0 0 chr9 18191591 18191622 -105884550 + AT_rich Low_complexity Low_complexity 1 31 0 2 723 21 0 0 0 chr9 18191649 18191670 -105884502 + AT_rich Low_complexity Low_complexity 1 21 0 2 723 551 200 176 0 chr9 18191900 18192025 -105884147 - B1_Mur3 SINE Alu 0 149 3 2 723 22 0 0 0 chr9 18192025 18192047 -105884125 + AT_rich Low_complexity Low_complexity 1 22 0 2 723 2459 112 130 46 chr9 18192769 18193358 -105882814 + Lx3B LINE L1 5981 6619 -354 2 723 342 302 20 30 chr9 18193358 18193457 -105882715 + B1F SINE Alu 26 123 -26 2 723 229 183 53 11 chr9 18193510 18193604 -105882568 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 723 222 62 75 30 chr9 18193610 18193677 -105882495 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 2 723 341 150 66 8 chr9 18193680 18193941 -105882231 + (TA)n Simple_repeat Simple_repeat 1 276 0 2 723 922 148 12 6 chr9 18193956 18194126 -105882046 + L1_Mur2 LINE L1 5127 5297 -580 2 723 19163 155 44 59 chr9 18194135 18195934 -105880238 + Lx LINE L1 777 2534 -3349 2 723 1076 105 0 0 chr9 18195934 18196077 -105880095 - B1_Mus2 SINE Alu 0 147 5 2 723 19163 171 62 82 chr9 18196077 18198469 -105877703 + Lx LINE L1 2535 5099 -784 2 723 342 0 0 0 chr9 18198469 18198507 -105877665 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 723 19163 133 30 41 chr9 18198507 18200294 -105875878 + Lx LINE L1 5100 6654 0 2 723 237 238 0 0 chr9 18200294 18200357 -105875815 + A-rich Low_complexity Low_complexity 1 63 0 2 723 333 0 0 0 chr9 18200423 18200460 -105875712 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 723 1595 39 15 5 chr9 18201257 18201462 -105874710 - L1Md_T LINE L1 0 6582 6376 2 723 381 275 65 32 chr9 18202078 18202202 -105873970 - LTR83 LTR ERVL -652 128 1 2 723 1388 266 88 0 chr9 18202830 18203239 -105872933 - MT2A LTR ERVL -8 525 81 2 723 361 264 0 131 chr9 18203230 18203352 -105872820 + MT2B LTR ERVL 153 258 -343 2 723 707 229 0 3 chr9 18203254 18203392 -105872780 + B1_Mur2 SINE Alu 9 143 -7 3 723 29 60 0 0 chr9 18204150 18204200 -105871972 + AT_rich Low_complexity Low_complexity 1 50 0 3 723 257 291 0 0 chr9 18204591 18204646 -105871526 - B1_Mur2 SINE Alu -16 133 79 3 723 6119 88 8 96 chr9 18205501 18205798 -105870374 + L1_Mus2 LINE L1 5589 5863 -703 3 723 1133 54 7 20 chr9 18205798 18205948 -105870224 + B1_Mus1 SINE Alu 1 148 0 3 723 6119 88 8 96 chr9 18205948 18206074 -105870098 + L1_Mus2 LINE L1 5864 5971 -595 3 723 993 67 44 0 chr9 18206074 18206209 -105869963 + B1_Mus2 SINE Alu 1 141 -6 3 723 6119 88 8 96 chr9 18206209 18206856 -105869316 + L1_Mus2 LINE L1 5972 6566 0 3 723 2942 57 26 0 chr9 18207301 18207686 -105868486 - MT2C_Mm LTR ERVL -67 408 14 3 723 2249 102 8 59 chr9 18207681 18208037 -105868135 + RMER2 LTR ERV1 230 567 0 3 723 828 102 0 25 chr9 18208150 18208271 -105867901 + B2_Mm2 SINE B2 1 118 -77 3 723 1091 78 28 0 chr9 18208272 18208414 -105867758 + B1_Mus2 SINE Alu 2 147 0 3 723 2023 121 45 0 chr9 18208750 18209063 -105867109 + ORR1A2 LTR MaLR 1 327 0 3 723 1200 109 36 16 chr9 18209066 18209282 -105866890 + MT2C_Mm LTR ERVL 284 601 0 3 723 3278 172 43 50 chr9 18209282 18210281 -105865891 + ORR1A2-int LTR MaLR 1 1056 -907 3 723 738 215 42 12 chr9 18210252 18210417 -105865755 - MT2A LTR ERVL -283 250 81 3 723 268 255 16 164 chr9 18210411 18210533 -105865639 + MT2B LTR ERVL 154 257 -344 3 723 608 270 0 55 chr9 18210437 18210582 -105865590 + B1_Mur2 SINE Alu 13 149 0 3 723 839 113 104 8 chr9 18211071 18211205 -105864967 + B1_Mus1 SINE Alu 1 147 -1 3 723 917 171 6 0 chr9 18211225 18211383 -105864789 + B2_Mm1t SINE B2 2 160 -33 3 723 360 0 0 0 chr9 18211383 18211423 -105864749 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 3 723 248 330 38 0 chr9 18212120 18212226 -105863946 + Lx9 LINE L1 7350 7459 -185 3 723 1126 55 0 20 chr9 18212530 18212679 -105863493 - B1_Mus2 SINE Alu 0 147 2 3 723 198 0 0 0 chr9 18212907 18212929 -105863243 + (TCC)n Simple_repeat Simple_repeat 1 22 0 3 723 530 250 129 0 chr9 18212960 18213092 -105863080 - B1_Mur2 SINE Alu 0 149 1 3 723 303 304 0 0 chr9 18213043 18213112 -105863060 - B4 SINE B4 -158 134 66 3 723 1300 50 11 27 chr9 18213235 18213259 -105862913 - B2_Mm1a SINE B2 -10 183 161 3 723 378 0 0 0 chr9 18213259 18213301 -105862871 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 723 1300 50 11 27 chr9 18213301 18213462 -105862710 - B2_Mm1a SINE B2 -33 160 1 3 723 22 0 0 0 chr9 18215503 18215525 -105860647 + AT_rich Low_complexity Low_complexity 1 22 0 3 723 246 325 188 0 chr9 18216032 18216149 -105860023 - MLT2B2 LTR ERVL -88 474 336 3 723 525 276 25 8 chr9 18216180 18216372 -105859800 - ORR1D2-int LTR MaLR -646 724 524 3 723 1776 245 82 31 chr9 18216372 18216894 -105859278 - Lx6 LINE L1 -15 7445 6897 3 723 1005 108 0 0 chr9 18216905 18217072 -105859100 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 3 723 1060 88 125 0 chr9 18217073 18217233 -105858939 - B2_Mm2 SINE B2 -15 180 1 3 723 321 259 25 178 chr9 18217261 18217328 -105858844 - ORR1D2-int LTR MaLR -839 531 477 3 723 1367 156 21 25 chr9 18217328 18217610 -105858562 + Lx2 LINE L1 6716 6996 -1 3 723 321 259 25 178 chr9 18217610 18217744 -105858428 - ORR1D2-int LTR MaLR -894 476 361 3 723 309 281 12 35 chr9 18217802 18217887 -105858285 - B1_Mus1 SINE Alu -64 84 2 3 723 997 304 30 28 chr9 18217890 18218276 -105857896 - ORR1D2-int LTR MaLR -1007 363 1 3 723 336 152 0 43 chr9 18218276 18218345 -105857827 - ORR1D2 LTR MaLR 0 370 305 3 724 1347 101 0 5 chr9 18219041 18219230 -105856942 + B2_Mm2 SINE B2 1 188 -7 3 724 238 378 0 0 chr9 18220664 18220675 -105855497 + B4 SINE B4 77 87 -205 3 724 462 314 6 0 chr9 18220675 18220805 -105855367 + B1_Mur3 SINE Alu 3 135 -14 3 724 1054 238 95 118 chr9 18220807 18220885 -105855287 - MT2A LTR ERVL -4 529 462 3 724 645 250 15 0 chr9 18220885 18221021 -105855151 - B1_Mus2 SINE Alu -8 139 2 3 724 1054 238 95 118 chr9 18221021 18221182 -105854990 - MT2A LTR ERVL -72 461 266 3 724 1240 204 258 49 chr9 18221182 18221651 -105854521 - RMER2 LTR ERV1 0 567 1 3 724 1054 238 95 118 chr9 18221651 18221871 -105854301 - MT2A LTR ERVL -268 265 80 3 724 712 203 14 7 chr9 18221871 18222015 -105854157 + B1_Mus1 SINE Alu 3 147 -1 3 724 408 136 110 12 chr9 18222028 18222110 -105854062 - MT2A LTR ERVL -441 92 3 3 724 22 0 0 0 chr9 18222205 18222227 -105853945 + AT_rich Low_complexity Low_complexity 1 22 0 3 724 3973 91 45 0 chr9 18222328 18222890 -105853282 + L1_Mus3 LINE L1 6046 6632 -6 3 724 649 237 0 0 chr9 18222917 18223048 -105853124 + B1_Mur4 SINE Alu 14 144 -6 3 724 219 270 72 105 chr9 18222918 18223071 -105853101 + B4A SINE B4 99 246 -46 3 724 882 168 0 0 chr9 18223086 18223247 -105852925 + GA-rich Low_complexity Low_complexity 3 163 0 3 724 198 0 0 0 chr9 18224676 18224698 -105851474 + (T)n Simple_repeat Simple_repeat 1 22 0 3 724 894 68 0 0 chr9 18224698 18224815 -105851357 - B1_Mus2 SINE Alu 0 147 31 3 724 1129 93 11 42 chr9 18224825 18225016 -105851156 - B2_Mm2 SINE B2 -9 186 2 3 724 512 204 0 0 chr9 18225020 18225113 -105851059 - 4.5SRNA scRNA scRNA -1 93 1 3 724 949 219 95 17 chr9 18225249 18225481 -105850691 - ORR1C1 LTR MaLR 0 378 129 3 724 1237 48 0 0 chr9 18225613 18225760 -105850412 + B1_Mus2 SINE Alu 1 147 0 3 724 1219 48 0 0 chr9 18226339 18226486 -105849686 - B1_Mus2 SINE Alu 0 147 1 3 724 251 300 131 0 chr9 18226501 18226631 -105849541 - B1F1 SINE Alu -2 147 1 3 724 342 223 28 78 chr9 18226767 18226908 -105849264 - Lx7 LINE L1 0 7696 7563 3 724 435 78 0 0 chr9 18226940 18227004 -105849168 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 724 1089 223 33 66 chr9 18227020 18227322 -105848850 - Lx7 LINE L1 -280 7416 7125 3 724 638 105 191 0 chr9 18227322 18227427 -105848745 + MT2B2 LTR ERVL 1 125 -459 3 724 324 164 0 0 chr9 18227428 18227495 -105848677 + T-rich Low_complexity Low_complexity 1 67 0 3 724 6994 87 135 1 chr9 18227594 18229552 -105846620 - L1_Mus2 LINE L1 -28 6538 4244 3 724 3238 123 6 2 chr9 18229553 18230032 -105846140 + MT2B2 LTR ERVL 104 584 0 3 724 629 231 7 7 chr9 18230050 18230194 -105845978 - Lx7 LINE L1 -584 7112 6969 3 724 2601 211 34 49 chr9 18230190 18230417 -105845755 - L1_Mur3 LINE L1 -3499 2381 2164 3 724 1086 88 0 0 chr9 18230417 18230564 -105845608 - B1_Mus2 SINE Alu 0 147 1 3 724 2601 211 34 49 chr9 18230564 18230723 -105845449 - L1_Mur3 LINE L1 -3717 2163 1998 3 724 2837 187 30 16 chr9 18230723 18231282 -105844890 - RMER2 LTR ERV1 0 567 1 3 724 2601 211 34 49 chr9 18231282 18231320 -105844852 - L1_Mur3 LINE L1 -3883 1997 1959 3 724 201 26 79 0 chr9 18231320 18231358 -105844814 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 724 2601 211 34 49 chr9 18231358 18231705 -105844467 - L1_Mur3 LINE L1 -3922 1958 1618 3 724 1213 48 0 0 chr9 18231705 18231851 -105844321 - B1_Mm SINE Alu 0 147 2 3 724 2601 211 34 49 chr9 18231851 18231892 -105844280 - L1_Mur3 LINE L1 -4263 1617 1578 3 724 662 231 91 10 chr9 18233460 18233710 -105842462 - Lx5 LINE L1 -8 7050 6735 3 724 605 226 38 15 chr9 18233709 18233970 -105842202 - L1_Mur3 LINE L1 -4371 1509 1243 3 724 348 24 0 0 chr9 18234151 18234192 -105841980 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 724 1573 214 53 60 chr9 18234193 18234625 -105841547 - RLTR24 LTR ERV1 0 529 101 3 724 576 42 0 0 chr9 18234645 18234716 -105841456 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 724 2262 169 10 31 chr9 18234849 18235265 -105840907 + MTB_Mm LTR MaLR 1 407 0 3 724 298 283 115 23 chr9 18235677 18235807 -105840365 + RLTR20C LTR ERVK 77 218 -333 3 724 330 188 0 15 chr9 18235892 18235957 -105840215 - ID_B1 SINE B4 -77 147 84 3 724 446 68 0 0 chr9 18235899 18235958 -105840214 - B1_Mus1 SINE Alu -88 60 2 3 724 246 32 0 0 chr9 18235970 18236001 -105840171 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 724 1151 64 0 0 chr9 18236005 18236145 -105840027 - B1_Mus1 SINE Alu -7 141 2 3 724 341 318 140 36 chr9 18237553 18237860 -105838312 - L1M5 LINE L1 -544 5629 5291 3 724 3718 120 104 17 chr9 18237875 18238520 -105837652 - RLTR19B LTR ERVK 0 715 15 3 724 26 30 0 0 chr9 18238627 18238660 -105837512 + AT_rich Low_complexity Low_complexity 1 33 0 3 724 358 274 0 95 chr9 18238976 18239081 -105837091 + ID_B1 SINE B4 109 203 -21 3 724 735 161 0 0 chr9 18239952 18240089 -105836083 + (TG)n Simple_repeat Simple_repeat 1 137 0 3 724 492 206 18 45 chr9 18240090 18240202 -105835970 - PB1D9 SINE Alu -11 109 1 3 724 438 231 24 49 chr9 18240237 18240360 -105835812 + PB1D9 SINE Alu 1 120 0 3 724 1009 226 77 26 chr9 18240786 18241059 -105835113 + Lx4B LINE L1 6770 7056 -2 3 724 29 0 0 0 chr9 18241059 18241088 -105835084 + AT_rich Low_complexity Low_complexity 1 29 0 3 724 1152 75 7 0 chr9 18241242 18241388 -105834784 - B1_Mus2 SINE Alu 0 147 1 3 724 4559 126 24 10 chr9 18241556 18242278 -105833894 - Lx LINE L1 0 6654 5923 3 724 8134 158 143 13 chr9 18242278 18244085 -105832087 - L1_Mm LINE L1 -135 5748 3707 3 724 6892 112 10 3 chr9 18244081 18245595 -105830577 + L1_Mus4 LINE L1 5111 6631 -5 3 724 3443 99 32 10 chr9 18245589 18246251 -105829921 - L1_Mur1 LINE L1 -2162 3724 3042 3 724 619 208 80 0 chr9 18246486 18246611 -105829561 + B1_Mus1 SINE Alu 1 135 -13 3 724 502 230 42 42 chr9 18246828 18246843 -105829329 - PB1D9 SINE Alu -1 119 109 3 724 180 77 0 0 chr9 18246843 18246869 -105829303 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 724 502 230 42 42 chr9 18246869 18246971 -105829201 - PB1D9 SINE Alu -12 108 2 3 724 1164 69 0 0 chr9 18246990 18247135 -105829037 - B1_Mm SINE Alu -1 146 2 3 724 343 284 20 0 chr9 18247179 18247281 -105828891 + PB1D7 SINE Alu 5 108 -12 3 724 1392 84 0 10 chr9 18247304 18247497 -105828675 - B2_Mm2 SINE B2 -3 192 2 3 724 748 191 7 21 chr9 18247731 18247875 -105828297 - B1_Mur3 SINE Alu -7 142 1 3 724 1091 115 0 0 chr9 18248648 18248796 -105827376 + B1_Mus1 SINE Alu 1 148 0 3 724 362 210 178 10 chr9 18249580 18249681 -105826491 - PB1D9 SINE Alu 0 120 3 3 724 22 0 0 0 chr9 18249696 18249718 -105826454 + AT_rich Low_complexity Low_complexity 1 22 0 3 724 277 371 62 0 chr9 18250282 18250379 -105825793 - PB1D7 SINE Alu -17 103 1 3 724 22 56 0 0 chr9 18250715 18250751 -105825421 + AT_rich Low_complexity Low_complexity 1 36 0 3 724 446 267 83 8 chr9 18250787 18250919 -105825253 + B1_Mur3 SINE Alu 1 142 -7 3 724 4308 79 8 17 chr9 18251129 18251721 -105824451 + LTRIS_Mus LTR ERV1 1 587 0 4 724 837 185 14 0 chr9 18252121 18252267 -105823905 - B1_Mus1 SINE Alu 0 148 1 4 724 576 261 87 56 chr9 18252343 18252538 -105823634 + RMER30 DNA MER1_type 1 201 -1 4 724 396 0 0 0 chr9 18252667 18252711 -105823461 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 724 285 306 77 50 chr9 18252745 18252927 -105823245 - RMER2 LTR ERV1 -27 540 354 4 724 3877 49 19 0 chr9 18253382 18253848 -105822324 + MT2C_Mm LTR ERVL 1 475 0 4 724 280 274 44 88 chr9 18254198 18254358 -105821814 + RLTR41 LTR ERV1 251 403 -43 4 724 198 71 0 0 chr9 18254899 18254927 -105821245 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 724 1386 138 56 4 chr9 18255543 18255775 -105820397 + RLTR22_Mus LTR ERVK 1 244 -1564 4 724 215 41 39 39 chr9 18255907 18255958 -105820214 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 724 480 230 76 35 chr9 18255964 18256108 -105820064 - RMER15-int LTR ERVL -3948 1051 902 4 724 405 0 0 0 chr9 18256113 18256158 -105820014 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 724 763 297 73 28 chr9 18256197 18256595 -105819577 - RMER15-int LTR ERVL -4179 820 405 4 724 811 282 131 30 chr9 18256703 18257075 -105819097 + MTD LTR MaLR 1 405 -14 4 724 500 316 53 30 chr9 18257075 18257339 -105818833 - RMER15-int LTR ERVL -4715 284 15 4 724 380 340 165 8 chr9 18257355 18257598 -105818574 - RMER15 LTR ERVL 0 575 295 4 724 205 343 67 1 chr9 18257815 18257940 -105818232 + MIR SINE MIR 42 180 -88 4 724 1096 93 0 0 chr9 18258487 18258626 -105817546 + B1_Mus1 SINE Alu 1 139 -9 4 724 456 51 0 0 chr9 18258626 18258685 -105817487 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 4 724 574 304 0 7 chr9 18258876 18259012 -105817160 - RSINE1 SINE B4 -28 137 3 4 724 256 330 21 52 chr9 18259099 18259195 -105816977 - PB1D10 SINE Alu -24 93 1 4 724 969 328 89 55 chr9 18260136 18260629 -105815543 + MLT1F LTR MaLR 39 548 0 4 724 299 313 25 45 chr9 18260835 18260992 -105815180 - MurSatRep1 Unknown Unknown -245 1892 1739 4 724 226 286 36 36 chr9 18260938 18261076 -105815096 - MMSAT4 Satellite Satellite 0 168 31 4 724 232 298 22 22 chr9 18261277 18261411 -105814761 - MMSAT4 Satellite Satellite 0 168 35 4 724 21 0 0 0 chr9 18261518 18261539 -105814633 + AT_rich Low_complexity Low_complexity 1 21 0 4 724 693 219 207 6 chr9 18262202 18262381 -105813791 + B3 SINE B2 2 216 0 4 724 239 278 102 10 chr9 18262499 18262597 -105813575 - B3A SINE B2 -4 194 88 4 724 240 186 221 0 chr9 18262892 18262978 -105813194 - RLTR22_Mus LTR ERVK -156 1652 1548 4 724 644 279 110 57 chr9 18263058 18263111 -105813061 - RLTR22_Mur LTR ERVK -1058 790 741 4 724 1350 140 95 12 chr9 18263111 18263364 -105812808 + Lx2 LINE L1 6723 6996 -1 4 724 644 279 110 57 chr9 18263364 18263645 -105812527 - RLTR22_Mur LTR ERVK -1108 740 438 4 724 450 208 62 10 chr9 18263789 18263886 -105812286 - B3A SINE B2 -94 104 3 4 724 1146 75 0 0 chr9 18264493 18264640 -105811532 + B1_Mus1 SINE Alu 2 148 0 4 724 207 0 0 0 chr9 18264658 18264681 -105811491 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 724 201 74 0 0 chr9 18264683 18264710 -105811462 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 724 1487 6 6 0 chr9 18264710 18264881 -105811291 + (TA)n Simple_repeat Simple_repeat 1 173 0 4 724 3633 199 75 15 chr9 18265153 18265733 -105810439 + RLTR25B LTR ERVK 1 606 -422 4 724 217 0 61 0 chr9 18265733 18265766 -105810406 + (CAAAC)n Simple_repeat Simple_repeat 1 35 0 4 724 3633 199 75 15 chr9 18265766 18265990 -105810182 + RLTR25B LTR ERVK 607 852 -176 4 724 1104 69 7 20 chr9 18266320 18266468 -105809704 - B1_Mus1 SINE Alu -1 147 2 4 724 809 213 83 104 chr9 18266514 18266639 -105809533 + RLTR25B LTR ERVK 757 860 -168 4 724 387 0 0 0 chr9 18266639 18266682 -105809490 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 724 809 213 83 104 chr9 18266682 18266834 -105809338 + RLTR25B LTR ERVK 861 1027 -1 4 724 2337 100 0 12 chr9 18267224 18267567 -105808605 - L1_Mus4 LINE L1 -2 6634 6296 4 724 3835 42 20 107 chr9 18267663 18268224 -105807948 - RLTR1B LTR ERV1 0 512 1 4 724 395 238 74 12 chr9 18268299 18268448 -105807724 - RLTR22_Mur LTR ERVK -169 1679 1463 4 724 1685 188 119 17 chr9 18268479 18268891 -105807281 - RLTR22_Mur LTR ERVK -1070 778 325 4 724 435 221 22 66 chr9 18268886 18269022 -105807150 + RLTR23 LTR ERV1 301 430 0 4 724 233 354 13 43 chr9 18269033 18269266 -105806906 + L1M4 LINE L1 524 749 -5793 4 724 198 118 0 0 chr9 18269799 18269833 -105806339 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 724 1795 234 14 32 chr9 18270033 18270404 -105805768 + ORR1D1 LTR MaLR 3 366 -8 4 724 2353 269 200 19 chr9 18270486 18271507 -105804665 + Lx8 LINE L1 6264 7469 -4 4 724 240 35 0 0 chr9 18271508 18271537 -105804635 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 724 242 290 112 94 chr9 18271544 18271704 -105804468 - MLT1A1 LTR MaLR 0 408 246 4 724 496 299 81 43 chr9 18271710 18271895 -105804277 + B3A SINE B2 7 198 0 4 724 384 301 8 0 chr9 18272374 18272507 -105803665 - MurSatRep1 Unknown Unknown -1409 728 595 4 724 772 312 17 70 chr9 18274047 18274347 -105801825 - MER21B LTR ERV1 -86 777 494 4 724 641 272 228 46 chr9 18274427 18274751 -105801421 + RMER15 LTR ERVL 45 427 -148 4 724 1685 158 41 55 chr9 18274961 18275377 -105800795 + RMER17C LTR ERVK 1 410 0 4 724 490 317 103 0 chr9 18275658 18275803 -105800369 + RSINE1 SINE B4 2 161 -4 4 724 272 173 71 107 chr9 18275945 18276029 -105800143 + RLTR25B LTR ERVK 429 509 -519 4 724 792 83 0 0 chr9 18275964 18276072 -105800100 + B1_Mus2 SINE Alu 40 147 0 4 724 198 91 0 0 chr9 18276072 18276105 -105800067 + (A)n Simple_repeat Simple_repeat 1 33 0 4 724 269 362 75 9 chr9 18276203 18276309 -105799863 + MER81 DNA AcHobo 2 114 0 4 724 227 350 12 0 chr9 18276400 18276480 -105799692 + BC1_Mm scRNA scRNA 6 86 -66 4 724 219 150 0 24 chr9 18276567 18276582 -105799590 + polypurine Low_complexity Low_complexity 4 18 0 4 724 1122 54 0 45 chr9 18276582 18276736 -105799436 + B1_Mus1 SINE Alu 2 148 0 4 724 219 150 0 24 chr9 18276736 18276761 -105799411 + polypurine Low_complexity Low_complexity 19 43 0 4 724 526 204 67 58 chr9 18278879 18278999 -105797173 + URR1B DNA MER1_type 3 123 -102 4 724 1087 75 0 7 chr9 18279000 18279147 -105797025 + B1_Mus1 SINE Alu 3 148 0 4 724 229 48 30 75 chr9 18279147 18279214 -105796958 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 4 724 791 107 0 24 chr9 18279214 18279338 -105796834 + URR1B DNA MER1_type 105 225 0 4 724 336 148 0 0 chr9 18279545 18279606 -105796566 + (A)n Simple_repeat Simple_repeat 1 61 0 4 724 814 302 125 0 chr9 18279636 18279868 -105796304 - MTD LTR MaLR -86 333 73 4 724 1454 68 11 0 chr9 18279868 18280059 -105796113 - B2_Mm1t SINE B2 0 193 1 4 724 416 276 87 57 chr9 18280449 18280714 -105795458 + L1MA5 LINE L1 5664 5936 -364 4 724 225 226 0 70 chr9 18280807 18280864 -105795308 - RSINE1 SINE B4 -33 132 80 4 724 351 288 0 24 chr9 18281327 18281409 -105794763 - RSINE1 SINE B4 -72 93 14 4 724 541 279 96 45 chr9 18281820 18282176 -105793996 + L1MB3 LINE L1 5795 6168 -15 4 724 209 276 17 0 chr9 18282251 18282309 -105793863 + CT-rich Low_complexity Low_complexity 6 64 0 4 724 287 279 23 146 chr9 18282447 18282577 -105793595 + B1F1 SINE Alu 35 148 -1 4 724 378 0 0 0 chr9 18282607 18282649 -105793523 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 724 481 262 172 0 chr9 18283271 18283416 -105792756 + MTE2a LTR MaLR 205 374 -5 4 724 332 251 92 13 chr9 18283768 18283972 -105792200 + L1MA5 LINE L1 6013 6234 -66 4 724 1112 64 0 14 chr9 18284095 18284231 -105791941 + B1_Mus2 SINE Alu 1 135 -12 4 724 225 0 0 0 chr9 18284231 18284256 -105791916 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 724 414 0 0 0 chr9 18284265 18284311 -105791861 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 724 921 223 86 5 chr9 18284316 18284514 -105791658 - ID_B1 SINE B4 0 224 11 4 724 288 255 10 50 chr9 18284518 18284617 -105791555 + L1MA4A LINE L1 5808 5902 -401 4 724 439 218 23 0 chr9 18284624 18284711 -105791461 + B4A SINE B4 3 91 -201 4 724 2511 62 68 0 chr9 18284749 18285073 -105791099 - ORR1A1 LTR MaLR 0 346 1 4 724 11752 68 15 4 chr9 18285074 18285572 -105790600 - ORR1A1-int LTR MaLR -1 1791 1298 4 724 3433 45 83 95 chr9 18285572 18285630 -105790542 - RLTR1B LTR ERV1 0 512 451 4 724 351 0 0 0 chr9 18285630 18285669 -105790503 + (CAGAA)n Simple_repeat Simple_repeat 3 41 0 4 724 3433 45 83 95 chr9 18285669 18286128 -105790044 - RLTR1B LTR ERV1 -62 450 2 4 724 11752 68 15 4 chr9 18286128 18287242 -105788930 - ORR1A1-int LTR MaLR -495 1297 162 4 724 435 283 7 68 chr9 18287209 18287357 -105788815 + B4A SINE B4 154 292 0 4 724 324 302 145 40 chr9 18287505 18287629 -105788543 - RSINE1 SINE B4 -19 146 10 4 724 681 56 0 0 chr9 18287954 18288044 -105788128 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 4 724 297 0 0 0 chr9 18288190 18288223 -105787949 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 724 959 258 147 3 chr9 18288283 18288583 -105787589 - Lx8 LINE L1 -127 7346 7004 4 724 21 95 0 0 chr9 18290045 18290108 -105786064 + AT_rich Low_complexity Low_complexity 1 63 0 4 724 473 279 104 22 chr9 18290247 18290430 -105785742 + B3 SINE B2 6 203 -13 4 724 9591 109 5 25 chr9 18290557 18292057 -105784115 - L1_Mus3 LINE L1 -532 6106 4639 4 724 432 0 0 0 chr9 18292057 18292105 -105784067 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 4 724 9591 124 8 26 chr9 18292105 18292481 -105783691 - L1_Mus3 LINE L1 -1245 4638 4261 4 724 3498 116 9 16 chr9 18292483 18293036 -105783136 + L1_Mus3 LINE L1 6088 6636 -2 4 724 31390 67 1 6 chr9 18293352 18298597 -105777575 + L1Md_F2 LINE L1 271 5589 -297 4 724 7757 49 20 1 chr9 18298597 18299574 -105776598 + L1Md_F2 LINE L1 5590 6585 0 4 724 538 259 27 40 chr9 18299590 18299739 -105776433 + MTEb LTR MaLR 233 379 0 4 724 21 0 0 0 chr9 18300260 18300281 -105775891 + AT_rich Low_complexity Low_complexity 1 21 0 4 724 481 322 12 29 chr9 18300452 18300695 -105775477 - Lx7 LINE L1 -329 7367 7129 4 724 5109 84 11 13 chr9 18300774 18301489 -105774683 - L1_Mus2 LINE L1 0 6566 5853 4 724 246 301 12 0 chr9 18301533 18301616 -105774556 - L1MC LINE L1 -775 5558 5475 4 724 811 203 0 0 chr9 18302327 18302465 -105773707 - B1_Mus2 SINE Alu -8 139 2 4 724 626 275 0 0 chr9 18302581 18302730 -105773442 - B1_Mur1 SINE Alu 0 149 1 4 724 506 305 35 5 chr9 18303354 18303552 -105772620 + Lx8 LINE L1 6930 7133 -340 5 724 2636 268 96 18 chr9 18303554 18304526 -105771646 + Lx8 LINE L1 6384 7431 -42 5 724 265 236 0 0 chr9 18304526 18304581 -105771591 - ORR1C2 LTR MaLR -329 55 1 5 724 30 45 0 0 chr9 18304591 18304635 -105771537 + AT_rich Low_complexity Low_complexity 1 44 0 5 724 766 231 0 0 chr9 18304640 18304774 -105771398 + B1_Mur2 SINE Alu 3 136 -13 5 724 322 109 0 0 chr9 18305574 18305620 -105770552 - B4 SINE B4 -236 56 11 5 724 191 61 30 0 chr9 18305621 18305654 -105770518 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 724 2687 68 0 14 chr9 18305708 18306090 -105770082 - L1Md_F2 LINE L1 0 6582 6212 5 724 35988 42 3 4 chr9 18306122 18312425 -105763747 - L1Md_T LINE L1 0 6585 194 5 724 1514 85 154 0 chr9 18312425 18312671 -105763501 + L1Md_F3 LINE L1 5933 6216 -368 5 724 366 286 29 48 chr9 18312800 18312903 -105763269 + ID_B1 SINE B4 85 185 -39 5 724 342 0 0 0 chr9 18313491 18313529 -105762643 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 724 425 244 27 2 chr9 18313622 18313735 -105762437 + B4A SINE B4 1 116 -176 5 724 1580 298 68 29 chr9 18313754 18314417 -105761755 + Lx8 LINE L1 6780 7468 -5 5 724 559 307 99 16 chr9 18314437 18314629 -105761543 + B4A SINE B4 85 292 0 5 724 667 312 112 31 chr9 18315283 18315541 -105760631 + B4A SINE B4 1 279 -13 5 724 184 256 135 34 chr9 18315736 18315825 -105760347 + MIRb SINE MIR 111 208 -60 5 724 1217 55 0 0 chr9 18316671 18316816 -105759356 - B1_Mm SINE Alu 0 147 3 5 724 360 322 34 27 chr9 18316845 18316992 -105759180 - RSINE1 SINE B4 -14 151 4 5 724 192 314 22 3 chr9 18317549 18317616 -105758556 + L2b LINE L2 3063 3132 -255 5 724 423 0 0 0 chr9 18317997 18318044 -105758128 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 724 207 0 0 0 chr9 18318044 18318066 -105758106 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 724 618 14 0 0 chr9 18318067 18318138 -105758034 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 724 25 31 0 0 chr9 18318695 18318727 -105757445 + AT_rich Low_complexity Low_complexity 1 32 0 5 724 624 315 0 0 chr9 18318829 18318978 -105757194 - B1F SINE Alu 0 149 1 5 724 5385 91 32 12 chr9 18319217 18320812 -105755360 + L1VL2 LINE L1 192 1826 -1789 5 724 254 330 34 0 chr9 18320952 18321040 -105755132 - PB1D10 SINE Alu 0 117 27 5 724 24 85 0 0 chr9 18321752 18321811 -105754361 + AT_rich Low_complexity Low_complexity 1 59 0 5 724 23 54 0 0 chr9 18321924 18321961 -105754211 + AT_rich Low_complexity Low_complexity 1 37 0 5 724 294 314 84 18 chr9 18324612 18324806 -105751366 - B4A SINE B4 -44 248 1 5 724 233 385 3 3 chr9 18325031 18325125 -105751047 + L2c LINE L2 3061 3157 -230 5 724 270 0 0 0 chr9 18325818 18325848 -105750324 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 724 213 178 0 0 chr9 18325871 18325916 -105750256 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 5 724 235 384 8 0 chr9 18325974 18326107 -105750065 + (TAGA)n Simple_repeat Simple_repeat 1 134 0 5 724 277 312 16 8 chr9 18326349 18326541 -105749631 + (TAGA)n Simple_repeat Simple_repeat 1 193 0 5 724 458 289 164 61 chr9 18327630 18327736 -105748436 + Lx8 LINE L1 6400 6533 -940 5 724 5919 104 29 14 chr9 18327736 18328605 -105747567 + Lx2 LINE L1 6116 6997 0 5 724 458 289 164 61 chr9 18328605 18328808 -105747364 + Lx8 LINE L1 6534 6741 -732 5 724 1048 291 78 22 chr9 18330129 18330487 -105745685 + MTD LTR MaLR 42 419 0 5 724 224 398 32 0 chr9 18330662 18330785 -105745387 + L2c LINE L2 3030 3156 -231 5 724 187 357 0 67 chr9 18331141 18331216 -105744956 + L2c LINE L2 3087 3156 -231 5 724 566 99 11 0 chr9 18331527 18331618 -105744554 + (TCCA)n Simple_repeat Simple_repeat 3 94 0 5 724 248 304 0 42 chr9 18331971 18332067 -105744105 + (TCCA)n Simple_repeat Simple_repeat 2 93 0 5 724 551 296 80 80 chr9 18332139 18332627 -105743545 + Lx8 LINE L1 5280 5767 -113 5 724 242 222 0 18 chr9 18332656 18332711 -105743461 - Lx7 LINE L1 -617 7079 7026 5 724 572 324 32 0 chr9 18332751 18332936 -105743236 + Lx7 LINE L1 7118 7308 -388 5 724 229 264 23 0 chr9 18332938 18333025 -105743147 + T-rich Low_complexity Low_complexity 2 90 0 5 724 893 271 153 43 chr9 18333151 18333773 -105742399 + Lx8 LINE L1 5773 6462 -1011 5 724 5016 75 22 9 chr9 18333777 18334584 -105741588 + MusHAL1 LINE L1 55 872 -1840 5 724 363 121 0 0 chr9 18334901 18334959 -105741213 + (T)n Simple_repeat Simple_repeat 1 58 0 5 724 853 73 186 0 chr9 18334959 18335083 -105741089 - B1_Mus2 SINE Alu 0 147 1 5 724 180 0 0 0 chr9 18335771 18335791 -105740381 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 724 478 245 7 27 chr9 18336299 18336446 -105739726 + Lx5 LINE L1 6904 7047 -3 5 724 322 389 13 36 chr9 18336617 18336841 -105739331 + MTEb LTR MaLR 20 238 -141 5 724 268 299 35 28 chr9 18338953 18339143 -105737029 + (TGGA)n Simple_repeat Simple_repeat 1 191 0 5 724 207 125 0 0 chr9 18339177 18339217 -105736955 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 724 318 50 0 0 chr9 18339218 18339258 -105736914 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 724 354 80 0 0 chr9 18339344 18339394 -105736778 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 724 180 77 0 0 chr9 18339549 18339575 -105736597 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 5 724 330 244 24 24 chr9 18340526 18340610 -105735562 + MTC LTR MaLR 3 86 -335 5 724 896 227 34 25 chr9 18340610 18340669 -105735503 + RMER12 LTR ERVK 2 63 -1259 5 724 2400 131 31 109 chr9 18340669 18341192 -105734980 + RLTR45 LTR ERVK 1 482 0 5 724 896 227 34 25 chr9 18341192 18341367 -105734805 + RMER12 LTR ERVK 64 237 -1085 5 724 188 297 27 13 chr9 18341429 18341504 -105734668 + MIR SINE MIR 82 157 -105 5 724 522 388 23 8 chr9 18341510 18341767 -105734405 + MTE2b LTR MaLR 7 267 -112 5 724 6797 77 10 14 chr9 18343559 18344535 -105731637 + L1_Mus2 LINE L1 5587 6558 -8 5 724 30074 115 29 10 chr9 18344536 18346140 -105730032 + L1Md_F LINE L1 244 1869 -4014 5 724 207 0 0 0 chr9 18346140 18346163 -105730009 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 724 30074 78 6 7 chr9 18346163 18346319 -105729853 + L1Md_F LINE L1 1870 2016 -3867 5 724 5428 60 3 4 chr9 18346319 18347018 -105729154 + L1Md_F2 LINE L1 5883 6580 -2 5 90 30074 78 6 7 chr9 18347018 18350581 -105725591 + L1Md_F LINE L1 2017 5585 -298 5 725 7297 86 6 5 chr9 18350581 18351343 -105724829 + L1Md_F2 LINE L1 5587 6345 -237 5 725 180 0 0 0 chr9 18351343 18351363 -105724809 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 5 725 7297 86 6 5 chr9 18351363 18351594 -105724578 + L1Md_F2 LINE L1 6346 6580 -2 5 725 30074 78 6 7 chr9 18351594 18351611 -105724561 + L1Md_F LINE L1 5586 5600 -283 5 725 22 35 0 0 chr9 18351617 18351646 -105724526 + AT_rich Low_complexity Low_complexity 1 29 0 5 725 437 301 6 28 chr9 18351955 18352136 -105724036 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 5 725 2390 187 109 13 chr9 18352693 18353315 -105722857 + Lx9 LINE L1 6962 7643 -1 5 725 725 51 10 0 chr9 18353861 18353959 -105722213 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 5 725 486 352 67 13 chr9 18354430 18354669 -105721503 + MTEa LTR MaLR 1 252 -127 5 725 188 67 33 0 chr9 18356747 18356777 -105719395 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 725 477 0 0 0 chr9 18357366 18357419 -105718753 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 725 342 0 0 0 chr9 18357419 18357456 -105718716 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 725 507 279 33 0 chr9 18358313 18358435 -105717737 - MTEa LTR MaLR -253 126 1 5 725 238 241 12 25 chr9 18358512 18358593 -105717579 + MTEa LTR MaLR 300 379 0 5 725 342 96 10 96 chr9 18358720 18358824 -105717348 + GA-rich Low_complexity Low_complexity 4 98 0 5 725 369 322 22 22 chr9 18359719 18359946 -105716226 + CT-rich Low_complexity Low_complexity 1 227 0 5 725 287 250 59 118 chr9 18359997 18360133 -105716039 + RMER15 LTR ERVL 1 128 -447 5 725 735 327 33 18 chr9 18360173 18360447 -105715725 + RMER15 LTR ERVL 279 556 -19 5 725 229 288 25 12 chr9 18360467 18360548 -105715624 + CT-rich Low_complexity Low_complexity 2 83 0 5 725 710 291 79 19 chr9 18360788 18361156 -105715016 + L1MB3 LINE L1 5766 6155 -28 5 725 244 64 43 0 chr9 18361448 18361495 -105714677 + (CAA)n Simple_repeat Simple_repeat 2 50 0 5 725 671 190 7 0 chr9 18361676 18361818 -105714354 + CT-rich Low_complexity Low_complexity 3 145 0 5 725 736 294 46 0 chr9 18361820 18362058 -105714114 - Lx6 LINE L1 0 7460 7212 5 725 394 322 75 42 chr9 18362058 18362178 -105713994 + B4A SINE B4 47 170 -122 5 725 478 186 11 11 chr9 18362205 18362292 -105713880 - B1_Mur2 SINE Alu -1 148 62 5 725 25 0 0 0 chr9 18362292 18362317 -105713855 + AT_rich Low_complexity Low_complexity 1 25 0 5 725 392 346 23 16 chr9 18362367 18362496 -105713676 - ZP3AR Satellite Satellite -74 138 9 5 725 357 270 0 45 chr9 18363253 18363385 -105712787 + CT-rich Low_complexity Low_complexity 1 126 0 5 725 3110 47 39 0 chr9 18363453 18363834 -105712338 + MTA_Mm LTR MaLR 1 396 0 5 725 203 170 21 0 chr9 18363891 18363938 -105712234 + CT-rich Low_complexity Low_complexity 2 49 0 5 725 220 368 0 0 chr9 18363952 18364028 -105712144 + CT-rich Low_complexity Low_complexity 4 79 0 5 725 511 298 5 90 chr9 18365423 18365611 -105710561 - B4A SINE B4 -119 173 2 5 725 318 337 24 9 chr9 18365764 18365898 -105710274 - B4 SINE B4 -142 150 13 5 725 4046 200 58 9 chr9 18365898 18366714 -105709458 + RMER13A LTR ERVK 5 860 0 5 725 468 51 0 0 chr9 18367077 18367136 -105709036 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 5 725 24 0 0 0 chr9 18367813 18367837 -105708335 + AT_rich Low_complexity Low_complexity 1 24 0 5 725 360 0 0 0 chr9 18368060 18368100 -105708072 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 725 351 0 0 0 chr9 18368100 18368138 -105708034 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 725 455 350 22 15 chr9 18368327 18368632 -105707540 + MTEa LTR MaLR 42 379 0 5 725 203 61 0 29 chr9 18368914 18368948 -105707224 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 6 725 648 327 66 66 chr9 18369652 18369940 -105706232 + B4A SINE B4 5 292 0 6 725 866 125 79 24 chr9 18370095 18370259 -105705913 + L1_Mus3 LINE L1 6466 6638 0 6 725 647 332 208 10 chr9 18370792 18371105 -105705067 + MTEb LTR MaLR 1 375 -4 6 725 464 341 53 160 chr9 18371519 18371763 -105704409 + B4 SINE B4 2 219 -73 6 725 38 39 0 0 chr9 18372108 18372160 -105704012 + AT_rich Low_complexity Low_complexity 1 52 0 6 725 555 66 0 0 chr9 18372166 18372242 -105703930 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 725 532 321 76 0 chr9 18372243 18372374 -105703798 - B3A SINE B2 -34 164 24 6 725 21 0 0 0 chr9 18372579 18372600 -105703572 + AT_rich Low_complexity Low_complexity 1 21 0 6 725 1790 127 174 11 chr9 18372747 18373120 -105703052 - Lx LINE L1 -1 6653 6220 6 725 293 320 37 20 chr9 18373120 18373247 -105702925 - B4 SINE B4 -33 259 129 6 725 7093 79 2 2 chr9 18373313 18374521 -105701651 + L1_Mus2 LINE L1 5358 6566 0 6 725 263 350 20 10 chr9 18374534 18374635 -105701537 - B4 SINE B4 -176 116 15 6 725 336 200 0 0 chr9 18374749 18374824 -105701348 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 725 318 192 51 0 chr9 18374828 18374906 -105701266 - Lx7 LINE L1 -1967 5729 5648 6 725 961 318 17 31 chr9 18376200 18376489 -105699683 + B4A SINE B4 8 292 0 6 725 356 161 0 0 chr9 18377276 18377332 -105698840 + ORR1A2 LTR MaLR 1 56 -271 6 725 422 99 99 0 chr9 18377329 18377400 -105698772 + ORR1A2 LTR MaLR 250 327 0 6 725 314 260 80 0 chr9 18377401 18377501 -105698671 + Lx7 LINE L1 7589 7696 0 6 725 201 392 39 23 chr9 18377661 18377789 -105698383 + MIRc SINE MIR 63 192 -76 6 725 813 328 137 11 chr9 18377948 18378416 -105697756 + MT2A LTR ERVL 7 533 0 6 725 2543 66 51 14 chr9 18378615 18378970 -105697202 - L1_Mus1 LINE L1 0 6567 6200 6 725 973 293 8 13 chr9 18379058 18379293 -105696879 + 7SK RNA RNA 4 237 -94 6 725 658 286 47 12 chr9 18379601 18379676 -105696496 + ID SINE ID 3 83 -141 6 725 336 326 50 18 chr9 18379676 18379811 -105696361 + B1F SINE Alu 3 139 -10 6 725 940 287 135 10 chr9 18382031 18382432 -105693740 + Lx8 LINE L1 6825 7275 -198 6 725 378 332 88 27 chr9 18382741 18383001 -105693171 - B4A SINE B4 -15 277 2 6 725 183 139 0 0 chr9 18383071 18383107 -105693065 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 725 327 297 145 6 chr9 18385560 18385841 -105690331 - L1MA4A LINE L1 -374 5929 5589 6 725 238 325 101 0 chr9 18385866 18386035 -105690137 + L1P5 LINE L1 5412 5597 -559 6 725 374 372 194 44 chr9 18386279 18386532 -105689640 - B4A SINE B4 0 292 2 6 725 803 325 15 65 chr9 18387049 18387309 -105688863 + B4A SINE B4 1 247 -45 6 725 22 80 0 0 chr9 18387520 18387570 -105688602 + AT_rich Low_complexity Low_complexity 1 50 0 6 725 218 286 125 0 chr9 18387655 18387711 -105688461 - B3 SINE B2 -153 63 1 6 725 913 269 175 23 chr9 18387815 18388123 -105688049 + ORR1E LTR MaLR 4 358 -1 6 725 216 135 0 0 chr9 18388467 18388504 -105687668 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 6 725 480 275 195 0 chr9 18388506 18388655 -105687517 - ID_B1 SINE B4 -46 178 1 6 725 363 136 0 0 chr9 18389956 18390015 -105686157 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 725 591 112 0 0 chr9 18390098 18390187 -105685985 + (TC)n Simple_repeat Simple_repeat 1 89 0 6 725 600 334 16 6 chr9 18390187 18390382 -105685790 - B4A SINE B4 -87 205 1 6 725 1825 252 64 8 chr9 18390615 18391000 -105685172 + RLTR16 LTR ERVK 1 413 -92 6 725 441 0 0 0 chr9 18391000 18391049 -105685123 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 725 1825 252 64 8 chr9 18391049 18391132 -105685040 + RLTR16 LTR ERVK 414 494 -11 6 725 322 277 18 9 chr9 18391725 18391838 -105684334 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 725 621 346 19 9 chr9 18391846 18392056 -105684116 - B4 SINE B4 0 292 81 6 725 344 127 32 0 chr9 18392057 18392120 -105684052 + CT-rich Low_complexity Low_complexity 1 65 0 6 725 374 210 15 27 chr9 18392154 18392247 -105683925 - B4 SINE B4 -70 95 3 6 725 619 246 0 0 chr9 18392389 18392507 -105683665 + RSINE1 SINE B4 12 129 -36 6 725 330 107 0 0 chr9 18392528 18392584 -105683588 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 725 1179 98 11 5 chr9 18392785 18392970 -105683202 - L1_Mus3 LINE L1 -1 6637 6452 6 725 642 333 28 9 chr9 18393016 18393228 -105682944 - ID_B1 SINE B4 -6 218 3 6 725 814 275 137 18 chr9 18394603 18394881 -105681291 + RMER15 LTR ERVL 265 575 0 6 725 3355 8 0 0 chr9 18395350 18395725 -105680447 - L1Md_A LINE L1 -2 6580 6206 6 725 2128 30 7 0 chr9 18395725 18395996 -105680176 + L1Md_A LINE L1 5676 5948 -634 6 725 335 357 38 0 chr9 18396060 18396217 -105679955 + RSINE1 SINE B4 3 165 0 6 725 894 19 0 0 chr9 18397529 18397633 -105678539 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 6 725 350 351 72 26 chr9 18398101 18398253 -105677919 - B4 SINE B4 -8 284 126 6 725 336 160 30 8 chr9 18398257 18398389 -105677783 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 6 725 715 252 84 20 chr9 18399005 18399207 -105676965 - B3 SINE B2 -1 215 1 6 725 399 350 88 18 chr9 18399340 18399505 -105676667 - B4A SINE B4 -110 182 3 6 725 735 304 49 76 chr9 18400271 18400661 -105675511 + MTE2a LTR MaLR 1 398 -21 6 725 1857 171 12 61 chr9 18400841 18401270 -105674902 + RMER17C LTR ERVK 1 408 -2 6 725 238 406 0 21 chr9 18402159 18402252 -105673920 + RSINE1 SINE B4 49 139 -26 6 725 659 333 45 20 chr9 18402328 18402530 -105673642 + B4 SINE B4 68 274 -18 6 725 22 0 0 0 chr9 18402596 18402618 -105673554 + AT_rich Low_complexity Low_complexity 1 22 0 6 725 1592 168 55 103 chr9 18403309 18403727 -105672445 + RMER10B LTR ERVL 1 398 0 6 725 353 217 85 21 chr9 18404318 18404412 -105671760 + RLTR23 LTR ERV1 331 430 0 6 725 353 359 23 0 chr9 18404947 18405078 -105671094 + B3A SINE B2 24 157 -41 6 725 387 0 0 0 chr9 18405087 18405130 -105671042 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 725 318 387 14 0 chr9 18406098 18406240 -105669932 - B1F SINE Alu 0 149 6 6 725 3856 117 14 2 chr9 18407531 18408111 -105668061 - L1_Mus4 LINE L1 -3 6633 6047 6 725 3581 115 3 0 chr9 18408111 18408908 -105667264 + L1_Mus4 LINE L1 5243 6044 -592 6 725 1091 142 15 40 chr9 18408923 18409121 -105667051 - B2_Mm1t SINE B2 0 193 1 6 725 712 263 119 92 chr9 18409128 18409457 -105666715 + MTE2a LTR MaLR 54 404 -15 6 725 421 269 62 11 chr9 18410029 18410206 -105665966 - L1MB2 LINE L1 -96 6075 5890 6 725 685 309 53 32 chr9 18410254 18410535 -105665637 - B4 SINE B4 -4 288 2 6 725 1470 228 46 51 chr9 18410799 18411188 -105664984 + RMER10B LTR ERVL 11 397 -1 6 725 904 269 0 0 chr9 18411490 18411687 -105664485 - B3 SINE B2 -19 197 1 6 725 465 321 76 5 chr9 18411815 18412000 -105664172 - B4A SINE B4 -90 202 5 6 725 458 377 65 55 chr9 18412767 18413168 -105663004 + MTD LTR MaLR 1 405 -14 6 725 2480 177 31 33 chr9 18413378 18413887 -105662285 - RLTR31_Mm LTR ERVK -53 508 1 6 725 12834 89 3 2 chr9 18414731 18416649 -105659523 - L1_Mus1 LINE L1 0 6567 4644 6 725 212 0 36 0 chr9 18416649 18416677 -105659495 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 725 12834 92 3 2 chr9 18416677 18417325 -105658847 - L1_Mus1 LINE L1 -1240 4643 3998 6 725 359 380 0 0 chr9 18417367 18417467 -105658705 + RSINE1 SINE B4 56 155 -10 6 725 955 282 75 22 chr9 18417540 18417808 -105658364 + B4 SINE B4 9 290 -2 6 725 300 53 0 0 chr9 18418018 18418056 -105658116 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 725 1767 182 7 98 chr9 18418638 18419076 -105657096 + RMER10B LTR ERVL 1 398 0 6 725 1489 65 78 18 chr9 18419235 18419454 -105656718 - L1Md_F2 LINE L1 -2 6580 6349 6 725 887 347 7 53 chr9 18419729 18419809 -105656363 + B4A SINE B4 1 80 -212 6 725 2954 69 13 10 chr9 18419809 18420204 -105655968 - MTA_Mm LTR MaLR 0 396 1 6 725 887 347 7 53 chr9 18420204 18420427 -105655745 + B4A SINE B4 81 290 -2 6 725 376 19 38 0 chr9 18420468 18420521 -105655651 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 725 333 317 83 0 chr9 18421582 18421702 -105654470 + B3A SINE B2 69 198 0 6 725 389 355 14 7 chr9 18422654 18422793 -105653379 - B1F SINE Alu -1 148 9 6 725 204 263 0 17 chr9 18422814 18422872 -105653300 + T-rich Low_complexity Low_complexity 4 60 0 6 725 392 269 24 63 chr9 18423098 18423225 -105652947 + B1F SINE Alu 26 147 -2 6 725 714 303 65 117 chr9 18424108 18424493 -105651679 + MTE2a LTR MaLR 1 365 -14 6 725 393 358 103 10 chr9 18425471 18425674 -105650498 - B4A SINE B4 0 292 71 6 725 588 62 0 0 chr9 18426493 18426574 -105649598 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 725 581 216 7 0 chr9 18427036 18427175 -105648997 + (TA)n Simple_repeat Simple_repeat 1 140 0 6 725 33 25 0 0 chr9 18427182 18427222 -105648950 + AT_rich Low_complexity Low_complexity 1 40 0 6 725 704 43 11 0 chr9 18427427 18427519 -105648653 + (TTCTC)n Simple_repeat Simple_repeat 4 96 0 6 725 955 82 82 0 chr9 18427741 18427876 -105648296 + B1_Mm SINE Alu 2 147 0 6 725 332 335 175 22 chr9 18427905 18428134 -105648038 + MTD LTR MaLR 1 264 -155 6 725 255 271 24 0 chr9 18428209 18428294 -105647878 + (TA)n Simple_repeat Simple_repeat 1 87 0 6 725 195 42 0 0 chr9 18428422 18428446 -105647726 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 725 269 318 12 12 chr9 18428596 18428682 -105647490 + GA-rich Low_complexity Low_complexity 1 86 0 7 725 279 275 24 24 chr9 18429002 18429084 -105647088 + MTE2b LTR MaLR 19 100 -279 7 725 913 319 8 30 chr9 18429089 18429354 -105646818 + MTE2b LTR MaLR 65 323 -56 7 725 230 349 123 0 chr9 18429398 18429504 -105646668 + Lx8 LINE L1 7202 7320 -153 7 725 336 333 0 0 chr9 18429502 18429628 -105646544 - Lx8 LINE L1 -314 7159 7034 7 725 324 350 11 6 chr9 18430401 18430622 -105645550 + GA-rich Low_complexity Low_complexity 1 222 0 7 725 344 361 88 6 chr9 18430787 18430968 -105645204 - MER20 DNA MER1_type -5 214 19 7 725 1048 269 116 9 chr9 18431240 18431315 -105644857 + MTEa LTR MaLR 5 87 -292 7 725 5258 58 1 8 chr9 18431315 18431981 -105644191 + L1Md_F2 LINE L1 5920 6581 -1 7 725 1048 269 116 9 chr9 18431981 18432242 -105643930 + MTEa LTR MaLR 88 376 -3 7 725 459 52 0 0 chr9 18432477 18432535 -105643637 + (GGA)n Simple_repeat Simple_repeat 1 58 0 7 725 1231 41 0 0 chr9 18432587 18432734 -105643438 - B1_Mm SINE Alu 0 147 1 7 725 375 315 54 5 chr9 18433144 18433348 -105642824 + L1_Rod LINE L1 89 302 -6870 7 725 517 193 0 68 chr9 18433348 18433465 -105642707 + ORR1C2 LTR MaLR 1 109 -275 7 725 231 229 0 0 chr9 18433467 18433515 -105642657 + L1VL1 LINE L1 36 83 -6339 7 725 6688 101 8 3 chr9 18433550 18434558 -105641614 + L1_Mus2 LINE L1 5587 6654 0 7 725 2054 231 45 26 chr9 18434592 18435126 -105641046 + ORR1C2-int LTR MaLR 1 544 -965 7 725 1555 179 92 16 chr9 18435114 18435431 -105640741 + ORR1C2 LTR MaLR 44 384 0 7 725 455 282 62 21 chr9 18435439 18435631 -105640541 + L1_Rod LINE L1 506 705 -6903 7 725 459 308 63 67 chr9 18435631 18435943 -105640229 + RMER13A LTR ERVK 1 353 -555 7 725 5719 232 81 44 chr9 18436292 18437285 -105638887 + L1_Rod LINE L1 701 1726 -4121 7 725 198 0 0 0 chr9 18437285 18437307 -105638865 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 725 5719 225 69 32 chr9 18437307 18438158 -105638014 + L1_Rod LINE L1 1727 2600 -3247 7 725 504 0 0 0 chr9 18438158 18438214 -105637958 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 725 5719 225 69 32 chr9 18438214 18438873 -105637299 + L1_Rod LINE L1 2601 3302 -2545 7 725 2850 243 65 43 chr9 18438874 18439796 -105636376 + Lx9 LINE L1 6490 7431 -213 7 725 696 45 0 0 chr9 18439809 18439897 -105636275 + (TG)n Simple_repeat Simple_repeat 2 89 0 7 725 313 209 96 0 chr9 18439904 18440019 -105636153 + Lx9 LINE L1 7494 7619 -25 7 725 617 346 58 86 chr9 18440082 18440373 -105635799 + B4A SINE B4 1 283 -9 7 725 183 42 0 0 chr9 18440373 18440397 -105635775 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 725 424 272 36 14 chr9 18440457 18440595 -105635577 + Lx8 LINE L1 6978 7118 -355 7 725 248 275 29 0 chr9 18440718 18440787 -105635385 + ID4 SINE ID 2 72 -11 7 725 482 0 17 0 chr9 18452688 18452746 -105623426 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 725 692 327 35 15 chr9 18452755 18452957 -105623215 - ID_B1 SINE B4 -11 213 8 7 725 2000 70 8 0 chr9 18453456 18453712 -105622460 - L1_Mus1 LINE L1 0 6567 6310 7 725 383 368 16 0 chr9 18453818 18453943 -105622229 + ID_B1 SINE B4 4 130 -94 7 725 256 358 30 0 chr9 18453955 18454022 -105622150 + B3 SINE B2 116 184 -32 7 725 343 232 171 0 chr9 18454173 18454255 -105621917 - RSINE1 SINE B4 -61 104 9 7 725 388 247 0 0 chr9 18454485 18454562 -105621610 - ID4_ SINE ID -5 78 2 7 725 239 359 57 0 chr9 18454576 18454682 -105621490 - PB1D7 SINE Alu -8 112 1 7 725 21 0 0 0 chr9 18455019 18455040 -105621132 + AT_rich Low_complexity Low_complexity 1 21 0 7 725 672 143 0 0 chr9 18455761 18455887 -105620285 + (TCCC)n Simple_repeat Simple_repeat 3 128 0 7 725 1270 232 57 9 chr9 18455948 18456265 -105619907 - Lx3C LINE L1 -3 6973 6642 7 725 950 277 9 0 chr9 18456265 18456485 -105619687 - ID_B1 SINE B4 0 224 3 7 725 322 257 100 50 chr9 18456485 18456513 -105619659 - Lx4A LINE L1 -416 6642 6608 7 725 283 330 11 22 chr9 18457078 18457168 -105619004 + B1_Mm SINE Alu 26 114 -33 7 725 192 302 112 28 chr9 18457392 18457535 -105618637 + L2 LINE L2 1999 2153 -1266 7 725 241 250 66 53 chr9 18457609 18457685 -105618487 - ID4 SINE ID 0 83 7 7 725 318 327 0 18 chr9 18457689 18457801 -105618371 - PB1D10 SINE Alu -7 110 1 7 725 252 267 109 22 chr9 18458194 18458332 -105617840 + L1M1 LINE L1 5759 5908 -392 7 725 936 294 129 25 chr9 18465961 18466432 -105609740 + Lx8 LINE L1 6895 7414 -59 7 725 321 118 0 0 chr9 18466432 18466483 -105609689 + (GGA)n Simple_repeat Simple_repeat 2 52 0 7 725 674 282 6 6 chr9 18466493 18466657 -105609515 + RSINE1 SINE B4 2 165 0 7 725 378 0 0 0 chr9 18466687 18466729 -105609443 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 7 725 358 263 8 8 chr9 18466760 18466879 -105609293 + Lx8 LINE L1 7353 7471 -2 7 725 30 45 0 0 chr9 18466943 18466987 -105609185 + AT_rich Low_complexity Low_complexity 1 44 0 7 725 457 337 48 11 chr9 18467103 18467289 -105608883 + B4A SINE B4 98 290 -2 7 725 636 324 82 31 chr9 18467387 18467642 -105608530 + B4A SINE B4 1 268 -24 7 725 269 219 14 0 chr9 18467694 18467767 -105608405 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 7 725 236 222 25 0 chr9 18468052 18468133 -105608039 + CT-rich Low_complexity Low_complexity 2 84 0 7 725 221 265 0 67 chr9 18468136 18468241 -105607931 + T-rich Low_complexity Low_complexity 3 100 0 7 725 346 298 51 26 chr9 18468241 18468358 -105607814 - ID_B1 SINE B4 0 224 105 7 725 188 215 0 30 chr9 18468463 18468530 -105607642 + (CATA)n Simple_repeat Simple_repeat 2 66 0 7 725 1205 27 0 0 chr9 18469579 18469725 -105606447 - RLTR1C LTR ERV1 -357 146 1 7 725 7238 92 14 1 chr9 18469725 18471131 -105605041 + L1_Mus1 LINE L1 5131 6566 -1 7 725 702 143 14 7 chr9 18471383 18471531 -105604641 + (TA)n Simple_repeat Simple_repeat 2 150 0 7 725 624 285 93 55 chr9 18471743 18472033 -105604139 + MER2 DNA MER2_type 39 339 -6 7 725 1952 221 69 22 chr9 18474380 18474888 -105601284 + RMER1B Other Other 535 1066 0 7 725 230 196 0 0 chr9 18475084 18475182 -105600990 + CT-rich Low_complexity Low_complexity 1 98 0 7 725 329 287 91 91 chr9 18475318 18475483 -105600689 - B4A SINE B4 -116 176 12 7 725 561 30 0 0 chr9 18475546 18475613 -105600559 + (TC)n Simple_repeat Simple_repeat 1 67 0 7 725 1253 230 30 5 chr9 18475614 18475908 -105600264 + ORR1D1 LTR MaLR 6 335 -35 7 725 359 310 75 16 chr9 18475992 18476179 -105599993 - MER44B DNA MER2_type -9 541 344 7 725 581 278 6 47 chr9 18477592 18477762 -105598410 + RSINE1 SINE B4 3 165 0 7 725 352 220 69 20 chr9 18477762 18477864 -105598308 + HAL1-3A_ME LINE L1 1975 2081 -777 7 725 444 335 113 6 chr9 18477902 18478061 -105598111 + B4A SINE B4 5 180 -112 7 725 236 229 107 13 chr9 18478080 18478157 -105598015 + RSINE1 SINE B4 78 147 -18 7 725 282 73 0 0 chr9 18478158 18478199 -105597973 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 725 684 56 0 0 chr9 18478199 18478287 -105597885 + (GA)n Simple_repeat Simple_repeat 2 90 0 7 725 216 0 0 0 chr9 18478315 18478339 -105597833 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 725 387 0 0 0 chr9 18478339 18478381 -105597791 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 725 982 220 29 5 chr9 18479681 18479891 -105596281 + B3 SINE B2 2 216 0 7 725 227 312 0 72 chr9 18480019 18480102 -105596070 - B4 SINE B4 -3 289 213 7 725 547 310 7 27 chr9 18480144 18480293 -105595879 - RSINE1 SINE B4 -8 157 12 7 725 330 307 16 95 chr9 18480298 18480424 -105595748 - B4 SINE B4 -86 206 91 7 725 450 265 29 10 chr9 18480440 18480543 -105595629 - B4 SINE B4 -187 105 1 7 90 315 309 0 126 chr9 18481080 18481191 -105594981 - B4A SINE B4 -195 97 1 7 726 508 306 12 53 chr9 18481292 18481461 -105594711 + B3A SINE B2 37 198 0 7 726 238 298 95 9 chr9 18481656 18481761 -105594411 - ZP3AR Satellite Satellite -77 135 22 7 726 288 300 13 27 chr9 18481739 18481827 -105594345 - PB1D7 SINE Alu -51 98 13 7 726 695 340 34 0 chr9 18482586 18482795 -105593377 + ID_B1 SINE B4 7 222 -2 7 726 383 324 46 64 chr9 18482910 18483128 -105593044 + MER20 DNA MER1_type 4 217 -2 7 726 482 165 33 11 chr9 18483572 18483664 -105592508 + U6 snRNA snRNA 2 95 -12 7 726 234 0 0 0 chr9 18483684 18483710 -105592462 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 726 508 338 34 0 chr9 18483712 18483919 -105592253 + ID_B1 SINE B4 1 214 -10 7 726 180 0 0 0 chr9 18484356 18484376 -105591796 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 726 864 47 52 17 chr9 18484574 18484657 -105591515 + (TTC)n Simple_repeat Simple_repeat 2 92 0 7 726 1219 73 11 11 chr9 18484657 18484837 -105591335 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 7 726 864 47 52 17 chr9 18484837 18484926 -105591246 + (TTC)n Simple_repeat Simple_repeat 2 88 0 7 726 460 236 70 8 chr9 18484927 18485055 -105591117 - MTD LTR MaLR -61 358 223 7 726 301 274 0 67 chr9 18485103 18485124 -105591048 - MTD LTR MaLR -288 131 111 7 726 1315 117 8 53 chr9 18485124 18485368 -105590804 + L1Md_F2 LINE L1 6350 6582 0 7 726 301 274 0 67 chr9 18485368 18485436 -105590736 - MTD LTR MaLR -309 110 48 7 726 1094 79 11 28 chr9 18485479 18485661 -105590511 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 7 726 195 42 0 0 chr9 18485662 18485686 -105590486 + (T)n Simple_repeat Simple_repeat 1 24 0 7 726 5658 8 0 0 chr9 18485692 18486318 -105589854 - L1Md_T LINE L1 0 6582 5957 7 726 10812 91 19 5 chr9 18486318 18487981 -105588191 - MusHAL1 LINE L1 -735 1977 292 7 726 296 254 0 0 chr9 18488311 18488370 -105587802 + RSINE1 SINE B4 106 164 -1 7 726 207 0 0 0 chr9 18488370 18488393 -105587779 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 726 301 144 56 0 chr9 18488402 18488492 -105587680 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 7 726 369 0 0 0 chr9 18488653 18488694 -105587478 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 726 827 244 12 0 chr9 18488699 18488867 -105587305 - B3A SINE B2 -27 171 2 7 726 245 244 169 7 chr9 18488867 18489003 -105587169 - L1MA9 LINE L1 -319 5981 5824 8 726 269 237 118 0 chr9 18489066 18489142 -105587030 - PB1D10 SINE Alu -10 107 23 8 726 259 322 69 0 chr9 18489076 18489163 -105587009 - ID_B1 SINE B4 -49 175 83 8 726 343 240 27 86 chr9 18489163 18489350 -105586822 - L1MA9 LINE L1 -483 5829 5654 8 726 649 286 113 26 chr9 18489655 18489849 -105586323 + ID_B1 SINE B4 2 212 -12 8 726 243 0 0 0 chr9 18490037 18490064 -105586108 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 726 272 337 19 19 chr9 18490141 18490247 -105585925 - Lx8 LINE L1 -178 7295 7190 8 726 225 370 57 32 chr9 18490386 18490509 -105585663 + L2b LINE L2 3248 3373 -2 8 726 5090 117 20 0 chr9 18490988 18491003 -105585169 - L1_Mm LINE L1 -6 5877 5863 8 726 1669 109 7 15 chr9 18491003 18491273 -105584899 - L1_Mus3 LINE L1 0 6638 6371 8 726 5090 117 20 0 chr9 18491273 18492070 -105584102 - L1_Mm LINE L1 -21 5862 5050 8 726 747 343 28 24 chr9 18492304 18492594 -105583578 - B4A SINE B4 0 292 2 8 726 405 0 0 0 chr9 18492635 18492680 -105583492 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 726 395 294 65 32 chr9 18492680 18492796 -105583376 - RSINE1 SINE B4 -41 124 3 8 726 2682 75 48 0 chr9 18493008 18493381 -105582791 - L1_Mus4 LINE L1 -177 6459 6069 8 726 829 250 372 0 chr9 18493448 18493768 -105582404 + MT2A LTR ERVL 95 533 0 8 726 443 323 71 47 chr9 18493805 18494016 -105582156 + B3A SINE B2 1 216 0 8 726 687 265 101 0 chr9 18494035 18494224 -105581948 + ID_B1 SINE B4 2 209 -15 8 726 272 267 0 0 chr9 18494935 18495010 -105581162 + L1MA4 LINE L1 5853 5927 -373 8 726 7016 66 1 0 chr9 18495122 18496050 -105580122 + L1_Mus2 LINE L1 5638 6566 0 8 726 441 291 94 12 chr9 18496126 18496370 -105579802 + Lx8 LINE L1 5657 5920 -1553 8 726 307 56 37 0 chr9 18496408 18496462 -105579710 + (TA)n Simple_repeat Simple_repeat 2 57 0 8 726 222 37 0 0 chr9 18496462 18496489 -105579683 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 726 25 31 0 0 chr9 18496774 18496806 -105579366 + AT_rich Low_complexity Low_complexity 1 32 0 8 726 21 0 0 0 chr9 18496818 18496839 -105579333 + AT_rich Low_complexity Low_complexity 1 21 0 8 726 421 385 77 5 chr9 18497658 18497854 -105578318 + B4 SINE B4 1 210 -82 8 726 655 150 68 58 chr9 18497861 18498052 -105578120 + L1_Rod LINE L1 4059 4251 -1596 8 726 375 336 163 29 chr9 18498358 18498597 -105577575 + B4A SINE B4 3 273 -19 8 726 1114 209 10 0 chr9 18498674 18498880 -105577292 + B3 SINE B2 3 210 -6 8 726 23 105 0 0 chr9 18498886 18498972 -105577200 + AT_rich Low_complexity Low_complexity 1 86 0 8 726 1201 269 74 16 chr9 18499119 18499497 -105576675 - BGLII_B LTR ERVK -41 400 1 8 726 278 239 0 0 chr9 18499538 18499609 -105576563 + L1VL4 LINE L1 406 476 -5826 8 726 619 167 0 16 chr9 18499610 18499738 -105576434 + Lx LINE L1 6526 6651 -3 8 726 291 239 0 90 chr9 18499882 18499960 -105576212 + B1F SINE Alu 79 149 0 8 726 1353 58 0 0 chr9 18500021 18500194 -105575978 + L1Md_F2 LINE L1 5414 5586 -297 1 726 8069 48 1 5 chr9 18500194 18501193 -105574979 + L1Md_F2 LINE L1 5587 6581 -1 1 726 206 121 0 0 chr9 18501223 18501256 -105574916 + (A)n Simple_repeat Simple_repeat 1 33 0 2 726 485 271 29 23 chr9 18501299 18501473 -105574699 - L1MA6 LINE L1 -309 5991 5817 3 726 470 255 36 30 chr9 18501588 18501771 -105574401 - L1MA6 LINE L1 -329 5827 5644 3 726 317 374 27 54 chr9 18501807 18501991 -105574181 - MER20 DNA MER1_type -22 197 19 4 726 287 238 32 0 chr9 18501991 18502054 -105574118 - ID_B1 SINE B4 -57 167 103 5 726 222 282 68 40 chr9 18502054 18502065 -105574107 - PB1D7 SINE Alu -31 89 14 6 726 274 270 16 0 chr9 18502696 18502759 -105573413 - ID SINE ID -160 64 1 5 726 449 174 43 21 chr9 18503667 18503761 -105572411 + MTC LTR MaLR 1 96 -325 7 726 629 109 0 0 chr9 18503762 18503854 -105572318 + 4.5SRNA scRNA scRNA 1 92 -2 8 726 1185 68 0 0 chr9 18503855 18504002 -105572170 + B1_Mm SINE Alu 1 147 0 9 726 1776 210 6 9 chr9 18504020 18504352 -105571820 + MTC LTR MaLR 83 413 -8 7 726 817 292 8 34 chr9 18504567 18504801 -105571371 + B4A SINE B4 1 228 -64 1 726 207 0 0 0 chr9 18504870 18504893 -105571279 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 726 429 81 0 0 chr9 18505497 18505559 -105570613 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 726 342 339 25 50 chr9 18505560 18505681 -105570491 - RSINE1 SINE B4 -44 121 4 1 726 412 143 12 12 chr9 18505795 18505880 -105570292 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 726 243 403 59 0 chr9 18506025 18506144 -105570028 + Tigger5 DNA MER2_type 14 139 -2267 1 726 513 0 0 0 chr9 18507370 18507427 -105568745 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 1 726 378 0 0 0 chr9 18507427 18507469 -105568703 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 726 882 295 47 0 chr9 18507469 18507703 -105568469 - B4A SINE B4 -44 248 4 1 726 465 138 0 0 chr9 18507824 18507904 -105568268 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 726 219 69 0 0 chr9 18508133 18508162 -105568010 + (TGG)n Simple_repeat Simple_repeat 1 29 0 2 726 213 224 0 0 chr9 18508266 18508324 -105567848 + CT-rich Low_complexity Low_complexity 3 60 0 2 726 324 284 0 0 chr9 18508324 18508405 -105567767 - ID_B1 SINE B4 0 224 144 2 726 696 290 95 26 chr9 18508421 18508726 -105567446 - RMER5 LTR ERV1 -176 358 33 2 726 240 122 0 0 chr9 18509174 18509215 -105566957 + (TAA)n Simple_repeat Simple_repeat 1 41 0 2 726 469 253 34 20 chr9 18509319 18509468 -105566704 + RMER5 LTR ERV1 373 523 -11 2 726 1285 49 4 9 chr9 18509664 18509893 -105566279 + (GAAA)n Simple_repeat Simple_repeat 1 227 0 2 726 447 308 90 0 chr9 18509893 18510026 -105566146 - ID_B1 SINE B4 -78 146 2 2 726 414 0 0 0 chr9 18510044 18510090 -105566082 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 726 33 25 0 0 chr9 18511089 18511129 -105565043 + AT_rich Low_complexity Low_complexity 1 40 0 2 726 447 68 0 0 chr9 18511129 18511188 -105564984 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 726 762 247 20 69 chr9 18511442 18511646 -105564526 + B3A SINE B2 1 194 -4 3 726 271 420 15 0 chr9 18511755 18511886 -105564286 - MER2 DNA MER2_type 0 345 213 3 726 490 326 7 13 chr9 18512167 18512316 -105563856 + B1F SINE Alu 1 148 -1 3 726 794 281 18 9 chr9 18512360 18512579 -105563593 + ID_B1 SINE B4 1 221 -3 3 726 403 292 28 19 chr9 18512585 18512693 -105563479 + RSINE1 SINE B4 3 111 -54 3 726 366 319 49 7 chr9 18513033 18513175 -105562997 - ORR1E LTR MaLR -209 150 3 3 726 541 234 78 0 chr9 18513181 18513309 -105562863 - B1_Mur1 SINE Alu -5 144 7 3 726 718 304 19 14 chr9 18513337 18513544 -105562628 - ID_B1 SINE B4 -6 218 11 3 726 672 13 0 0 chr9 18513808 18513885 -105562287 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 726 285 172 0 0 chr9 18514428 18514486 -105561686 + L1_Mur3 LINE L1 5298 5355 -525 3 726 2317 231 32 17 chr9 18514489 18515022 -105561150 + Lx5 LINE L1 6504 7044 -6 4 726 6897 65 4 4 chr9 18515080 18516005 -105560167 - L1_Mus1 LINE L1 0 6567 5643 4 726 293 300 21 167 chr9 18516070 18516214 -105559958 - B4 SINE B4 -4 288 166 4 726 697 236 34 22 chr9 18516214 18516392 -105559780 - MTE2a LTR MaLR 0 379 200 4 726 1746 180 46 83 chr9 18516486 18516897 -105559275 - Lx5 LINE L1 -3 7047 6652 4 726 1712 235 60 16 chr9 18516900 18517353 -105558819 - Lx5 LINE L1 -587 6463 5991 4 726 560 280 30 0 chr9 18517609 18517741 -105558431 + B1_Mur1 SINE Alu 12 147 -2 4 726 248 137 20 0 chr9 18517744 18517795 -105558377 + (CAAA)n Simple_repeat Simple_repeat 3 54 0 4 726 1403 224 128 9 chr9 18517864 18518193 -105557979 - ORR1D1 LTR MaLR 0 374 7 4 726 319 250 0 0 chr9 18518199 18518259 -105557913 + RSINE1 SINE B4 71 130 -35 4 726 719 249 99 20 chr9 18518425 18518626 -105557546 + ID_B1 SINE B4 1 217 -7 4 726 899 62 21 7 chr9 18518876 18519021 -105557151 + L1_Mus3 LINE L1 6487 6633 -5 5 726 227 312 12 24 chr9 18519133 18519186 -105556986 + polypyrimidine Low_complexity Low_complexity 30 82 0 5 726 621 40 0 0 chr9 18519186 18519262 -105556910 + (TCCCC)n Simple_repeat Simple_repeat 3 78 0 5 726 405 0 0 0 chr9 18519262 18519307 -105556865 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 5 726 227 312 12 24 chr9 18519307 18519334 -105556838 + polypyrimidine Low_complexity Low_complexity 3 29 0 5 726 505 256 88 0 chr9 18519335 18519472 -105556700 - B1_Mur2 SINE Alu 0 149 1 5 726 342 0 0 0 chr9 18519504 18519542 -105556630 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 726 265 343 105 42 chr9 18519658 18519946 -105556226 + L2a LINE L2 2872 3174 -252 5 726 714 336 70 26 chr9 18520128 18520400 -105555772 + B4A SINE B4 2 285 -7 5 726 396 0 0 0 chr9 18520412 18520456 -105555716 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 726 1113 52 0 0 chr9 18520456 18520608 -105555564 + (GA)n Simple_repeat Simple_repeat 2 154 0 6 726 183 371 67 0 chr9 18520737 18520842 -105555330 + MIRb SINE MIR 145 256 -12 6 726 530 277 18 0 chr9 18521072 18521184 -105554988 + RSINE1 SINE B4 4 117 -48 6 726 261 0 0 0 chr9 18521217 18521246 -105554926 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6 726 326 284 0 47 chr9 18521275 18521360 -105554812 + RSINE1 SINE B4 17 97 -68 6 726 240 259 19 0 chr9 18521677 18521731 -105554441 - B4A SINE B4 -237 55 1 6 726 532 280 102 23 chr9 18521932 18522148 -105554024 - Lx9 LINE L1 -452 7192 6960 6 726 228 314 0 69 chr9 18522415 18522487 -105553685 - ID2 SINE ID -5 78 12 6 726 333 0 0 0 chr9 18522499 18522536 -105553636 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 726 335 224 46 23 chr9 18522555 18522642 -105553530 - BC1_Mm scRNA scRNA -57 95 7 6 726 377 318 28 9 chr9 18522696 18522804 -105553368 - RSINE1 SINE B4 -14 151 42 7 726 253 307 114 74 chr9 18523125 18523301 -105552871 - B3A SINE B2 -14 184 2 7 726 729 307 9 14 chr9 18523313 18523528 -105552644 - ID_B1 SINE B4 -8 216 3 7 726 771 66 0 0 chr9 18523696 18523802 -105552370 + (TC)n Simple_repeat Simple_repeat 1 106 0 7 726 370 279 0 0 chr9 18523880 18523966 -105552206 - RSINE1 SINE B4 -69 96 11 7 726 519 306 15 7 chr9 18523984 18524119 -105552053 - ID_B1 SINE B4 -1 223 88 7 726 259 330 9 18 chr9 18525344 18525455 -105550717 + CT-rich Low_complexity Low_complexity 3 112 0 7 726 198 71 0 0 chr9 18526484 18526512 -105549660 + (CCTG)n Simple_repeat Simple_repeat 4 31 0 7 726 320 241 94 81 chr9 18526637 18526786 -105549386 + RLTR42-int LTR ERVK 1047 1197 -4325 7 726 225 0 0 0 chr9 18526869 18526894 -105549278 + (TTATG)n Simple_repeat Simple_repeat 1 25 0 7 726 394 233 33 20 chr9 18527728 18527881 -105548291 + Lx2B LINE L1 6841 6995 -5 8 726 670 152 52 6 chr9 18528210 18528382 -105547790 + RLTR42-int LTR ERVK 1948 2127 -3395 7 726 488 202 18 0 chr9 18528428 18528537 -105547635 + RLTR42-int LTR ERVK 2123 2233 -3289 7 726 235 320 53 13 chr9 18528560 18528712 -105547460 - L1MB3 LINE L1 -7 6176 6019 8 726 638 310 94 5 chr9 18529231 18529432 -105546740 + ID_B1 SINE B4 6 224 0 8 726 193 118 19 19 chr9 18529435 18529487 -105546685 + A-rich Low_complexity Low_complexity 3 54 0 8 726 1193 41 0 20 chr9 18529494 18529631 -105546541 + B1_Mm SINE Alu 2 138 -9 8 726 249 57 0 0 chr9 18529631 18529666 -105546506 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 726 1193 41 0 20 chr9 18529666 18529677 -105546495 + B1_Mm SINE Alu 139 147 0 8 726 26 74 0 0 chr9 18529756 18529810 -105546362 + AT_rich Low_complexity Low_complexity 1 54 0 8 726 586 313 114 3 chr9 18529832 18530149 -105546023 + Lx9 LINE L1 6359 6710 -934 8 726 1022 173 74 9 chr9 18530283 18530499 -105545673 - Lx4B LINE L1 -41 7017 6788 8 726 961 319 34 29 chr9 18530489 18531015 -105545157 + Lx9 LINE L1 6910 7438 -206 8 726 221 191 71 0 chr9 18531145 18531187 -105544985 - BC1_Mm scRNA scRNA -107 45 1 8 726 930 314 36 7 chr9 18531201 18531477 -105544695 - B4 SINE B4 -2 290 7 9 726 182 294 126 23 chr9 18532077 18532164 -105544008 - L2a LINE L2 -75 3351 3256 9 726 1296 185 14 0 chr9 18533096 18533318 -105542854 - URR1B DNA MER1_type 0 225 1 9 726 512 278 59 96 chr9 18533391 18533817 -105542355 - L1MA4 LINE L1 -370 5930 5521 9 726 253 207 12 12 chr9 18533928 18534011 -105542161 + GA-rich Low_complexity Low_complexity 2 84 0 9 726 418 224 16 49 chr9 18534019 18534141 -105542031 + RMER4B LTR ERVK 27 144 -441 9 726 486 0 0 0 chr9 18534150 18534204 -105541968 + (GAA)n Simple_repeat Simple_repeat 1 54 0 9 726 845 145 6 16 chr9 18534204 18534386 -105541786 + GA-rich Low_complexity Low_complexity 1 180 0 9 726 500 279 134 29 chr9 18534389 18534671 -105541501 + RMER4B LTR ERVK 243 526 -59 9 726 552 30 0 0 chr9 18534685 18534751 -105541421 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 726 476 91 73 0 chr9 18534752 18534862 -105541310 + (CAGAGA)n Simple_repeat Simple_repeat 3 120 0 9 726 180 77 0 0 chr9 18535055 18535081 -105541091 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 726 287 286 13 108 chr9 18535192 18535349 -105540823 + MT2B2 LTR ERVL 137 278 -306 1 726 501 256 83 0 chr9 18535232 18535353 -105540819 + B1_Mur1 SINE Alu 6 136 -13 1 726 189 107 0 0 chr9 18535353 18535381 -105540791 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1 726 384 286 0 67 chr9 18535536 18535671 -105540501 - MLT1A LTR MaLR -215 159 34 1 726 366 346 26 19 chr9 18535724 18535880 -105540292 - RSINE1 SINE B4 -7 158 2 1 726 503 270 4 0 chr9 18536104 18536356 -105539816 + (TCCA)n Simple_repeat Simple_repeat 1 253 0 1 726 200 277 0 0 chr9 18536384 18536431 -105539741 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 1 726 7188 118 11 1 chr9 18536570 18538422 -105537750 - L1_Mus3 LINE L1 -5 6633 4760 1 726 4832 131 45 63 chr9 18538422 18539332 -105536840 + RLTR13D6 LTR ERVK 7 900 -2 1 726 19327 147 18 20 chr9 18539337 18543512 -105532660 - L1_Mus3 LINE L1 -1128 4755 609 1 726 365 200 10 21 chr9 18543919 18544016 -105532156 + L1MA8 LINE L1 5845 5940 -351 1 726 1260 156 27 9 chr9 18544039 18544259 -105531913 + URR1B DNA MER1_type 1 224 -1 1 726 273 29 0 0 chr9 18544431 18544465 -105531707 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 726 448 324 73 51 chr9 18544783 18545017 -105531155 + Tigger7 DNA MER2_type 32 270 -2221 1 726 3377 20 8 10 chr9 18546027 18546424 -105529748 - MTA_Mm LTR MaLR 0 396 1 1 726 260 204 0 0 chr9 18546428 18546477 -105529695 - RLTR42-int LTR ERVK -208 5314 5266 1 726 622 291 59 93 chr9 18546686 18546790 -105529382 - RLTR42-int LTR ERVK -352 5170 5066 1 726 303 28 0 0 chr9 18546790 18546826 -105529346 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 726 622 291 59 93 chr9 18546826 18547130 -105529042 - RLTR42-int LTR ERVK -457 5065 4778 1 726 452 228 0 0 chr9 18547162 18547263 -105528909 - RLTR42-int LTR ERVK -2547 2975 2875 1 726 553 167 52 15 chr9 18547489 18547623 -105528549 + L1_Mur3 LINE L1 2620 2758 -3122 1 726 435 119 0 0 chr9 18547820 18547887 -105528285 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1 726 235 347 56 32 chr9 18548098 18548200 -105527972 + B4 SINE B4 98 203 -89 1 726 258 32 0 0 chr9 18548200 18548231 -105527941 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 726 235 347 56 32 chr9 18548231 18548253 -105527919 + B4 SINE B4 204 224 -68 1 726 240 263 13 0 chr9 18548253 18548329 -105527843 + (CAGAGA)n Simple_repeat Simple_repeat 6 82 0 1 726 387 0 0 0 chr9 18548921 18548964 -105527208 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 726 729 240 38 5 chr9 18549043 18549227 -105526945 - Lx7 LINE L1 -389 7307 7118 1 726 369 0 0 0 chr9 18549256 18549297 -105526875 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 726 228 363 0 21 chr9 18549834 18549927 -105526245 + B4A SINE B4 172 262 -30 1 726 326 231 14 43 chr9 18550031 18550171 -105526001 + (CA)n Simple_repeat Simple_repeat 1 136 0 1 726 451 279 0 47 chr9 18550592 18550761 -105525411 - Lx8 LINE L1 -349 7124 6964 1 726 677 293 0 49 chr9 18550823 18551128 -105525044 - L1_Mur3 LINE L1 -322 5558 5269 1 726 510 17 0 0 chr9 18551137 18551196 -105524976 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 726 378 0 0 0 chr9 18551196 18551237 -105524935 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 726 437 276 112 0 chr9 18551253 18551369 -105524803 - B1F2 SINE Alu -11 138 10 1 726 23 54 0 0 chr9 18551898 18551935 -105524237 + AT_rich Low_complexity Low_complexity 1 37 0 1 726 3411 57 2 7 chr9 18551935 18552374 -105523798 - L1_Mus2 LINE L1 0 6566 6130 1 726 299 265 110 96 chr9 18552376 18552476 -105523696 + MTE2a LTR MaLR 13 102 -277 1 726 521 30 15 0 chr9 18552476 18552543 -105523629 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 726 299 299 238 31 chr9 18552543 18552715 -105523457 + MTE2a LTR MaLR 103 320 -59 1 726 691 258 231 16 chr9 18552902 18553213 -105522959 + MTE2b LTR MaLR 1 378 -1 1 726 303 336 35 26 chr9 18553570 18553683 -105522489 - ID_B1 SINE B4 0 224 111 1 726 21 0 0 0 chr9 18553728 18553749 -105522423 + AT_rich Low_complexity Low_complexity 1 21 0 1 726 399 338 94 77 chr9 18553804 18554038 -105522134 - B4 SINE B4 -52 240 3 1 726 1420 285 60 115 chr9 18554067 18554920 -105521252 + RLTR22_Mur LTR ERVK 1 806 -1042 1 726 878 230 75 136 chr9 18554909 18555129 -105521043 + RLTR22_Mur LTR ERVK 745 914 -408 1 726 318 115 0 0 chr9 18555129 18555181 -105520991 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 726 878 246 258 76 chr9 18555181 18555545 -105520627 + RLTR22_Mur LTR ERVK 915 1321 -1 1 726 437 194 11 11 chr9 18555573 18555667 -105520505 - Lx8 LINE L1 -584 6889 6796 1 726 863 268 154 32 chr9 18555848 18556160 -105520012 - RMER15 LTR ERVL -6 569 220 1 726 273 140 0 0 chr9 18556535 18556592 -105519580 + (T)n Simple_repeat Simple_repeat 1 57 0 1 726 212 274 0 0 chr9 18557007 18557058 -105519114 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 1 726 483 316 104 78 chr9 18557108 18557338 -105518834 - B4A SINE B4 -55 237 2 1 726 626 0 14 0 chr9 18557356 18557430 -105518742 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 726 453 348 60 56 chr9 18557610 18558058 -105518114 + Lx8 LINE L1 6776 7225 -248 1 726 695 347 63 25 chr9 18558549 18558927 -105517245 - MTD LTR MaLR -5 374 19 1 726 288 0 0 0 chr9 18558930 18558962 -105517210 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 726 394 244 86 77 chr9 18560322 18560544 -105515628 - Lx9 LINE L1 0 7644 7421 1 726 684 64 0 0 chr9 18560608 18560702 -105515470 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 726 736 278 50 83 chr9 18560728 18561030 -105515142 - B4A SINE B4 0 292 1 1 726 297 275 1 0 chr9 18561221 18561310 -105514862 + L1MA4A LINE L1 5372 5461 -836 1 726 25 99 0 0 chr9 18561321 18561402 -105514770 + AT_rich Low_complexity Low_complexity 1 81 0 1 726 664 291 0 0 chr9 18561402 18561536 -105514636 + RSINE1 SINE B4 3 136 -29 1 726 23 33 0 0 chr9 18561586 18561616 -105514556 + AT_rich Low_complexity Low_complexity 1 30 0 1 726 222 283 0 0 chr9 18561702 18561748 -105514424 + PB1D10 SINE Alu 26 71 -46 1 726 453 158 0 0 chr9 18561760 18561842 -105514330 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 726 430 310 83 30 chr9 18561887 18562254 -105513918 + L1MA4A LINE L1 5650 6034 -266 1 726 378 0 0 0 chr9 18562269 18562311 -105513861 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1 726 1557 97 2 1 chr9 18562817 18563170 -105513002 + L1VL1 LINE L1 1136 1490 -4393 1 726 2974 81 8 2 chr9 18563312 18563710 -105512462 - MTB LTR MaLR 0 400 1 1 726 879 288 42 9 chr9 18563899 18564113 -105512059 + B4A SINE B4 4 224 -68 1 726 323 277 8 15 chr9 18564222 18564354 -105511818 - Lx8 LINE L1 -1545 5928 5797 1 726 501 17 0 0 chr9 18564356 18564414 -105511758 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 1 726 353 301 144 19 chr9 18564422 18564693 -105511479 + Lx8 LINE L1 7141 7445 -28 1 726 26 30 0 0 chr9 18564821 18564854 -105511318 + AT_rich Low_complexity Low_complexity 1 33 0 1 726 184 158 53 0 chr9 18565672 18565710 -105510462 - L3 LINE CR1 -1656 2833 2794 1 726 740 289 25 25 chr9 18565998 18566282 -105509890 - B4A SINE B4 -8 284 1 1 726 350 306 119 12 chr9 18566705 18567056 -105509116 + L1MA4A LINE L1 5509 5900 -403 1 726 484 340 6 0 chr9 18567594 18567753 -105508419 - RSINE1 SINE B4 -4 161 2 1 726 868 309 96 3 chr9 18569005 18569369 -105506803 + L1_Rod LINE L1 135 532 -6640 1 726 1198 198 65 27 chr9 18569368 18569705 -105506467 - L1_Mur3 LINE L1 -1717 4163 3814 1 726 351 78 0 0 chr9 18569724 18569775 -105506397 + L1_Mm LINE L1 5462 5512 -371 1 726 2888 118 33 2 chr9 18569775 18570233 -105505939 + Lx LINE L1 5326 5797 -86 1 726 28210 116 6 14 chr9 18570234 18576508 -105499664 + L1_Mus3 LINE L1 409 6631 -7 1 726 23 33 0 0 chr9 18576512 18576542 -105499630 + AT_rich Low_complexity Low_complexity 1 30 0 1 726 3608 119 11 2 chr9 18576574 18577146 -105499026 + Lx LINE L1 5799 6375 -279 1 726 1347 128 24 4 chr9 18577143 18577395 -105498777 + MusHAL1 LINE L1 1829 2085 -627 1 726 343 277 67 0 chr9 18577467 18577622 -105498550 - L1_Mur3 LINE L1 -1085 5058 4904 1 726 1672 177 75 3 chr9 18577713 18578047 -105498125 - Lx4B LINE L1 -348 6710 6353 1 726 522 318 51 49 chr9 18578108 18578597 -105497575 - L1_Mur3 LINE L1 -7174 538 49 1 726 519 286 5 5 chr9 18578597 18578808 -105497364 - L1_Mur3 LINE L1 -1146 4734 4524 1 726 234 0 0 0 chr9 18578822 18578848 -105497324 + (TTATA)n Simple_repeat Simple_repeat 2 27 0 1 726 1069 102 0 0 chr9 18579198 18579345 -105496827 - B1_Mus1 SINE Alu 0 148 2 1 726 3830 250 27 11 chr9 18579435 18580389 -105495783 - Lx5 LINE L1 -40 7010 6042 1 726 483 155 0 0 chr9 18580907 18580991 -105495181 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 1 726 7176 31 0 1 chr9 18581122 18581963 -105494209 - L1Md_F2 LINE L1 -1 6581 5742 1 726 1219 100 27 16 chr9 18581969 18582152 -105494020 + B2_Mm1t SINE B2 2 186 -7 1 726 2718 187 39 35 chr9 18582188 18582949 -105493223 - Lx5 LINE L1 -1007 6043 5269 1 726 21 0 0 0 chr9 18583029 18583050 -105493122 + AT_rich Low_complexity Low_complexity 1 21 0 1 726 3239 125 20 4 chr9 18583050 18583555 -105492617 - Lx3A LINE L1 -11 6970 6458 1 726 225 227 30 15 chr9 18583720 18583787 -105492385 + CT-rich Low_complexity Low_complexity 2 69 0 1 726 306 255 67 87 chr9 18584671 18584821 -105491351 + RMER17C-int LTR ERVK 375 521 -2717 1 726 725 288 60 55 chr9 18584776 18585158 -105491014 + RodERV21-int LTR ERV1 705 1088 -3903 1 726 5537 265 23 28 chr9 18585226 18586847 -105489325 + RodERV21-int LTR ERV1 1106 2718 -2273 1 726 255 31 0 0 chr9 18586945 18586977 -105489195 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 726 334 342 27 49 chr9 18587051 18587497 -105488675 + RodERV21-int LTR ERV1 3639 4074 -3017 1 726 2686 334 44 14 chr9 18587642 18589040 -105487132 + RodERV21-int LTR ERV1 3359 4798 -193 1 726 195 85 64 0 chr9 18589388 18589435 -105486737 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 726 2249 103 60 5 chr9 18589533 18589933 -105486239 - Lx3A LINE L1 -519 6462 6041 1 726 687 253 26 113 chr9 18589933 18590314 -105485858 + RLTR46 LTR ERVK 1 357 0 1 726 915 177 22 57 chr9 18590314 18590542 -105485630 - Lx3B LINE L1 -927 6046 5827 1 726 2492 68 3 6 chr9 18590561 18590887 -105485285 - L1_Mus1 LINE L1 0 6567 6243 1 726 968 113 0 67 chr9 18590873 18591053 -105485119 + L1Md_F2 LINE L1 6415 6582 0 1 726 1605 156 9 27 chr9 18591056 18591385 -105484787 + Lx3A LINE L1 5827 6149 -832 1 726 4431 55 5 0 chr9 18591383 18591961 -105484211 - L1Md_F2 LINE L1 -333 6249 5669 2 726 1931 138 6 6 chr9 18591955 18592276 -105483896 - Lx3B LINE L1 -46 5840 5520 1 726 6895 189 104 30 chr9 18592273 18592762 -105483410 - L1_Mur2 LINE L1 -1875 4002 3483 2 726 215 31 0 30 chr9 18592762 18592795 -105483377 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 726 6895 189 104 30 chr9 18592795 18593619 -105482553 - L1_Mur2 LINE L1 -2395 3482 2566 2 726 2844 156 70 0 chr9 18593619 18594087 -105482085 - Lx3C LINE L1 -2 6974 6474 2 726 6895 189 104 30 chr9 18594087 18594223 -105481949 - L1_Mur2 LINE L1 -3312 2565 2417 2 726 228 121 0 0 chr9 18594223 18594256 -105481916 - RMER12B LTR ERVK -181 1223 1191 2 726 6895 189 104 30 chr9 18594256 18594580 -105481592 - L1_Mur2 LINE L1 -3312 2416 2059 2 726 210 71 0 0 chr9 18594580 18594608 -105481564 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 726 6895 189 104 30 chr9 18594608 18594775 -105481397 - L1_Mur2 LINE L1 -3819 2058 1883 2 726 1753 269 67 11 chr9 18594780 18595300 -105480872 - Lx2B LINE L1 -5 6995 6447 2 726 39252 9 0 6 chr9 18595464 18601632 -105474540 - L1Md_A LINE L1 0 6582 457 2 726 297 293 71 65 chr9 18603054 18603222 -105472950 + RLTR25A LTR ERVK 935 1103 0 2 726 1337 247 20 15 chr9 18603227 18603618 -105472554 - Lx4B LINE L1 -603 6455 6063 2 726 1047 229 8 0 chr9 18603618 18603854 -105472318 - Lx4B LINE L1 -226 5651 5414 2 726 2297 142 15 0 chr9 18603823 18604231 -105471941 - Lx4B LINE L1 -646 5231 4818 2 726 2984 182 11 18 chr9 18604213 18604784 -105471388 - Lx4A LINE L1 -658 6400 5825 2 726 2908 69 15 8 chr9 18604784 18605177 -105470995 + MTA_Mm LTR MaLR 1 396 0 2 726 7822 86 7 5 chr9 18605177 18606272 -105469900 + MTA_Mm-int LTR MaLR 1 1098 0 2 726 2963 76 5 5 chr9 18606272 18606668 -105469504 + MTA_Mm LTR MaLR 1 396 0 2 726 2984 196 18 34 chr9 18606668 18606723 -105469449 - Lx4A LINE L1 -56 5824 5769 2 726 15407 189 70 13 chr9 18606726 18608532 -105467640 - Lx4A LINE L1 -1 7057 5087 2 726 4840 133 53 14 chr9 18608532 18609366 -105466806 - Lx LINE L1 0 6654 5789 2 726 19061 127 8 9 chr9 18609366 18611540 -105464632 - L1_Mm LINE L1 -793 5090 2903 2 726 189 0 0 0 chr9 18611540 18611561 -105464611 + (TTAAA)n Simple_repeat Simple_repeat 1 21 0 2 90 19061 131 10 9 chr9 18611561 18612963 -105463209 - L1_Mm LINE L1 -2981 2902 1505 2 727 8404 38 4 1 chr9 18612965 18614581 -105461591 - L1Md_F2 LINE L1 0 6582 4963 2 727 2794 100 2 0 chr9 18614577 18614977 -105461195 + L1_Mus1 LINE L1 5677 6077 -490 2 727 2343 243 39 99 chr9 18614979 18615843 -105460329 - L1VL4 LINE L1 -5343 959 148 2 727 1689 206 14 8 chr9 18615885 18616273 -105459899 - L1VL4 LINE L1 -5362 1060 679 2 727 404 205 9 9 chr9 18616557 18616670 -105459502 - L1_Mur2 LINE L1 -4202 1675 1563 2 727 4193 172 58 53 chr9 18617887 18618848 -105457324 + RMER17B LTR ERVK 1 958 0 2 727 29 70 0 0 chr9 18619404 18619461 -105456711 + AT_rich Low_complexity Low_complexity 1 57 0 2 727 26 30 0 0 chr9 18621027 18621060 -105455112 + AT_rich Low_complexity Low_complexity 1 33 0 2 727 610 333 44 42 chr9 18621461 18621916 -105454256 - L1_Mur3 LINE L1 -7208 504 49 2 727 532 286 5 5 chr9 18621916 18622146 -105454026 - L1_Mur3 LINE L1 -1146 4734 4524 2 727 198 0 0 0 chr9 18622510 18622532 -105453640 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 727 26396 137 36 7 chr9 18624633 18630695 -105445477 - L1_Mus2 LINE L1 0 6566 380 2 727 5227 142 26 42 chr9 18630701 18631697 -105444475 - Lx3_Mus LINE L1 0 7009 6030 2 727 237 250 99 33 chr9 18632025 18632116 -105444056 + Lx2B LINE L1 708 804 -6180 2 727 10852 202 36 5 chr9 18632242 18632723 -105443449 + Lx2B LINE L1 830 1319 -5665 2 727 4487 133 48 15 chr9 18632723 18633506 -105442666 + RMER17D2 LTR ERVK 1 809 0 2 727 10852 172 29 9 chr9 18633506 18634229 -105441943 + Lx2B LINE L1 1320 2048 -3838 2 727 369 0 0 0 chr9 18634229 18634270 -105441902 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 727 10852 172 29 9 chr9 18634270 18635661 -105440511 + Lx2B LINE L1 2049 3472 -2414 2 727 1670 207 101 37 chr9 18635668 18636148 -105440024 + RMER16 LTR ERVK 23 469 -64 2 727 1024 177 5 10 chr9 18636173 18636378 -105439794 + Lx2B LINE L1 3471 3674 -2203 2 727 29 0 0 0 chr9 18636381 18636410 -105439762 + AT_rich Low_complexity Low_complexity 1 29 0 2 727 5214 64 54 0 chr9 18636413 18637099 -105439073 - L1_Mus1 LINE L1 -1 6566 5844 2 727 186 43 0 0 chr9 18637099 18637122 -105439050 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 727 703 213 107 0 chr9 18637375 18637572 -105438600 + Lx2B LINE L1 4448 4665 -1221 2 727 4184 177 69 60 chr9 18637572 18637699 -105438473 + Lx2B LINE L1 4854 4986 -900 2 727 261 0 0 0 chr9 18637699 18637728 -105438444 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 727 4184 177 69 60 chr9 18637728 18638012 -105438160 + Lx2B LINE L1 4987 5269 -617 2 727 270 0 0 0 chr9 18638012 18638042 -105438130 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 727 4184 177 69 60 chr9 18638042 18638208 -105437964 + Lx2B LINE L1 5270 5414 -472 2 727 3708 40 2 0 chr9 18638208 18638657 -105437515 - L1Md_T LINE L1 0 6582 6133 2 727 7081 166 75 46 chr9 18638657 18638895 -105437277 + Lx2B LINE L1 5415 5673 -213 2 727 1430 196 25 13 chr9 18638895 18639211 -105436961 - RLTR46 LTR ERVK 0 320 1 2 727 7081 147 85 21 chr9 18639211 18640454 -105435718 + Lx2B LINE L1 5671 6999 -1 2 727 306 333 102 69 chr9 18640489 18640734 -105435438 - MT2A LTR ERVL -76 457 205 2 727 21 0 0 0 chr9 18640903 18640924 -105435248 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 1597 32 0 0 chr9 18640946 18641133 -105435039 + B2_Mm1t SINE B2 2 188 -5 2 727 239 226 75 0 chr9 18641225 18641318 -105434854 + Lx9 LINE L1 7390 7489 -155 2 727 24 67 0 0 chr9 18641632 18641677 -105434495 + AT_rich Low_complexity Low_complexity 1 45 0 2 727 5492 128 56 17 chr9 18641711 18642985 -105433187 - L1_Mus2 LINE L1 0 6566 5250 2 727 16906 146 6 7 chr9 18642974 18643719 -105432453 - L1_Mus2 LINE L1 -1693 4190 3456 2 727 186 43 0 0 chr9 18643719 18643742 -105432430 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 727 16906 146 6 7 chr9 18643742 18645627 -105430545 - L1_Mus2 LINE L1 -2428 3455 1567 2 727 237 33 0 0 chr9 18645627 18645657 -105430515 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 727 16906 166 31 17 chr9 18645657 18647041 -105429131 - L1_Mus2 LINE L1 -4317 1566 219 2 727 9075 160 32 7 chr9 18647042 18649453 -105426719 - Lx LINE L1 -14 6640 4178 2 727 3045 211 66 5 chr9 18649504 18650156 -105426016 - RLTR17 LTR ERVK 0 692 1 2 727 308 53 0 0 chr9 18650400 18650438 -105425734 + tRNA-Phe-TTY tRNA tRNA 39 76 0 2 727 1608 131 123 3 chr9 18650443 18650735 -105425437 - IAPEY3_LTR LTR ERVK -5 327 1 2 727 3258 197 55 17 chr9 18650735 18651547 -105424625 - L1_Mur2 LINE L1 -897 4980 4138 2 727 18201 108 37 11 chr9 18651580 18652333 -105423839 - L1_Mus3 LINE L1 -14 6624 5842 2 727 3173 46 5 3 chr9 18652333 18652724 -105423448 + MTA_Mm LTR MaLR 1 392 -4 2 727 18201 188 34 24 chr9 18652724 18654942 -105421230 - L1_Mus3 LINE L1 -36 5841 3595 2 727 3393 50 28 16 chr9 18654942 18655373 -105420799 + RLTR10C LTR ERVK 1 436 0 2 727 18201 188 34 24 chr9 18655373 18655804 -105420368 - L1_Mus3 LINE L1 -2283 3594 3160 2 727 2111 199 16 77 chr9 18655804 18656366 -105419806 + RLTR12B LTR ERVK 1 528 0 2 727 18201 188 34 24 chr9 18656366 18657672 -105418500 - L1_Mus3 LINE L1 -2718 3159 1842 2 727 307 348 87 0 chr9 18657679 18657863 -105418309 - L1_Mus3 LINE L1 -7485 243 44 2 727 1315 105 289 8 chr9 18658105 18658354 -105417818 + L1_Mus3 LINE L1 5822 6140 -498 2 727 619 82 0 0 chr9 18658354 18658452 -105417720 + L1_Mus3 LINE L1 6536 6633 -5 2 727 385 260 31 31 chr9 18658458 18658585 -105417587 + Lx8 LINE L1 7002 7128 -345 2 727 217 103 0 49 chr9 18658742 18658783 -105417389 + (TCTCTG)n Simple_repeat Simple_repeat 6 44 0 2 727 536 314 91 28 chr9 18659921 18660173 -105415999 - RMER15 LTR ERVL -122 453 186 2 727 360 88 0 0 chr9 18660250 18660307 -105415865 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 2 727 363 105 0 0 chr9 18660520 18660577 -105415595 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 727 509 371 48 18 chr9 18660590 18660862 -105415310 - B4A SINE B4 -12 280 1 2 727 251 303 30 35 chr9 18660906 18661031 -105415141 - MLT1B LTR MaLR -59 408 266 2 727 7157 180 64 19 chr9 18662152 18664563 -105411609 - Lx4A LINE L1 -52 7006 4491 2 727 3704 62 20 2 chr9 18664577 18665064 -105411108 + LTRIS2 LTR ERV1 69 564 0 2 727 750 129 0 0 chr9 18665064 18665180 -105410992 - Lx4A LINE L1 -1383 4494 4379 2 727 639 110 0 65 chr9 18665182 18665289 -105410883 + B1_Mus1 SINE Alu 1 100 -48 2 727 4472 139 39 11 chr9 18665289 18665388 -105410784 - Lx4A LINE L1 -2613 3264 3172 2 727 1927 110 98 113 chr9 18665388 18665701 -105410471 + RLTR9C LTR ERVK 1 301 -92 2 727 549 0 0 0 chr9 18665701 18665762 -105410410 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 727 1927 110 98 113 chr9 18665762 18665847 -105410325 + RLTR9C LTR ERVK 302 392 -1 2 727 4472 139 39 11 chr9 18665847 18666135 -105410037 - Lx4A LINE L1 -2706 3171 2860 2 727 732 23 0 0 chr9 18666135 18666221 -105409951 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 2 727 4472 139 39 11 chr9 18666221 18666634 -105409538 - Lx4A LINE L1 -3018 2859 2441 2 727 1886 149 35 9 chr9 18666638 18666977 -105409195 - RMER17B LTR ERVK -326 632 285 2 727 9984 113 24 7 chr9 18666979 18668428 -105407744 - MERVK26-int LTR ERVK -3796 3123 1651 2 727 33436 72 4 12 chr9 18669181 18674396 -105401776 + L1Md_F3 LINE L1 416 5586 -297 2 727 8180 34 11 0 chr9 18674396 18675382 -105400790 + L1Md_F3 LINE L1 5587 6583 -1 2 727 207 0 0 0 chr9 18676080 18676103 -105400069 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 2 727 5415 259 79 16 chr9 18676103 18678120 -105398052 + Lx7 LINE L1 3836 5984 -1712 2 727 683 329 10 5 chr9 18680902 18681110 -105395062 - B3 SINE B2 -6 210 2 2 727 448 341 44 39 chr9 18681143 18681323 -105394849 - B3A SINE B2 -15 183 3 2 727 329 293 63 63 chr9 18681702 18681877 -105394295 - Lx8 LINE L1 -62 7411 7237 2 727 330 26 0 0 chr9 18681877 18681916 -105394256 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 727 671 350 73 40 chr9 18682202 18682556 -105393616 + MTEa LTR MaLR 14 379 0 2 727 653 307 5 41 chr9 18683326 18683523 -105392649 - B3A SINE B2 0 198 9 2 727 240 130 0 0 chr9 18683591 18683637 -105392535 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 2 727 464 116 12 0 chr9 18683637 18683723 -105392449 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 727 302 317 142 47 chr9 18683724 18683893 -105392279 - B3A SINE B2 -30 186 2 2 727 219 344 56 0 chr9 18684097 18684187 -105391985 - B1F SINE Alu -6 143 49 2 727 20024 183 69 14 chr9 18684676 18686612 -105389560 + L1VL4 LINE L1 742 2895 -2991 2 727 474 18 0 0 chr9 18686612 18686667 -105389505 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 2 727 20024 190 35 17 chr9 18686667 18687569 -105388603 + L1VL4 LINE L1 2896 3774 -2112 2 727 1555 32 27 0 chr9 18687569 18687756 -105388416 + B2_Mm1a SINE B2 2 193 0 2 727 20024 190 35 17 chr9 18687756 18688592 -105387580 + L1VL4 LINE L1 3775 4599 -1287 2 727 1154 77 0 0 chr9 18688592 18688735 -105387437 + B1_Mus1 SINE Alu 1 143 -5 2 727 182 62 31 0 chr9 18688738 18688770 -105387402 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 727 20024 190 35 17 chr9 18688770 18689198 -105386974 + L1VL4 LINE L1 4600 5020 -866 2 727 987 104 0 18 chr9 18689198 18689365 -105386807 + (GAGAA)n Simple_repeat Simple_repeat 1 164 0 2 727 20024 190 35 17 chr9 18689365 18689935 -105386237 + L1VL4 LINE L1 5021 5607 -279 2 727 42 71 0 0 chr9 18689956 18690040 -105386132 + AT_rich Low_complexity Low_complexity 1 84 0 2 727 25 31 0 0 chr9 18690675 18690707 -105385465 + AT_rich Low_complexity Low_complexity 1 32 0 2 727 8523 65 1 10 chr9 18690713 18691875 -105384297 + ORR1A1-int LTR MaLR 642 1792 0 2 727 2012 55 76 4 chr9 18691875 18692150 -105384022 + ORR1A1 LTR MaLR 1 295 -51 2 727 23 54 0 0 chr9 18692440 18692477 -105383695 + AT_rich Low_complexity Low_complexity 1 37 0 2 727 348 319 7 104 chr9 18693007 18693161 -105383011 + B4 SINE B4 2 140 -152 2 727 419 187 0 0 chr9 18693213 18693288 -105382884 - Lx6 LINE L1 -1786 5674 5600 2 727 288 0 0 0 chr9 18693921 18693953 -105382219 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 727 1134 44 0 0 chr9 18693953 18694088 -105382084 - B1_Mus1 SINE Alu -13 135 1 2 727 2509 228 12 2 chr9 18694802 18695394 -105380778 - Lx6 LINE L1 -277 5603 5006 2 727 7400 134 135 21 chr9 18695404 18697337 -105378835 - L1_Mm LINE L1 -57 3857 1679 3 727 4909 127 6 33 chr9 18697334 18698146 -105378026 - L1VL4 LINE L1 -5337 965 176 3 727 432 0 0 0 chr9 18698147 18698195 -105377977 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3 727 40256 14 0 6 chr9 18698216 18704419 -105371753 - L1Md_A LINE L1 0 6582 422 3 727 3178 241 21 22 chr9 18704421 18705382 -105370790 - Lx6 LINE L1 -887 4993 4034 2 727 7155 103 4 7 chr9 18705391 18706782 -105369390 - L1_Mus2 LINE L1 -1 6565 5179 3 727 9224 88 16 46 chr9 18706826 18709081 -105367091 - L1Md_F2 LINE L1 -1 6581 4408 3 727 6950 97 5 8 chr9 18709084 18709689 -105366483 - L1_Mus1 LINE L1 -1 6566 5965 3 727 2462 145 60 32 chr9 18709689 18710158 -105366014 - RLTR45 LTR ERVK 0 482 1 3 727 11573 115 2 3 chr9 18710158 18711987 -105364185 - L1_Mus1 LINE L1 -603 5964 4135 3 727 3823 157 35 61 chr9 18711987 18713069 -105363103 + RLTR13D1 LTR ERVK 1 1023 0 3 727 9187 130 47 6 chr9 18713069 18714278 -105361894 - L1_Mus1 LINE L1 -1743 4140 2889 3 727 213 39 0 0 chr9 18714278 18714304 -105361868 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 3 727 9187 130 47 6 chr9 18714304 18714650 -105361522 - L1_Mus1 LINE L1 -2995 2888 2523 3 727 8033 135 6 29 chr9 18715178 18717026 -105359146 - L1_Mus1 LINE L1 -3353 2530 725 3 727 9973 214 52 14 chr9 18717051 18718961 -105357211 - Lx6 LINE L1 -1816 4064 2058 2 727 492 48 0 0 chr9 18718961 18719024 -105357148 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 727 9973 218 54 15 chr9 18719024 18719975 -105356197 - Lx6 LINE L1 -3823 2057 1086 2 727 1138 249 40 6 chr9 18719959 18720307 -105355865 - Lx6 LINE L1 -6507 1221 862 2 727 797 299 4 40 chr9 18720354 18720601 -105355571 + Lx9 LINE L1 6955 7192 -452 3 727 3277 95 36 2 chr9 18720876 18721342 -105354830 + RLTR45 LTR ERVK 1 482 0 3 727 1630 184 7 3 chr9 18721618 18721917 -105354255 - Lx2B LINE L1 -552 6448 6149 3 727 451 265 153 77 chr9 18721940 18722279 -105353893 + RLTR9A LTR ERVK 4 368 0 3 727 4262 147 66 17 chr9 18722707 18723483 -105352689 + RMER16-int LTR ERVK 253 1066 -4340 3 727 1724 117 15 0 chr9 18723486 18723760 -105352412 - L1_Mm LINE L1 -1419 4464 4187 3 727 992 86 13 0 chr9 18723741 18723892 -105352280 - MusHAL1 LINE L1 -635 2077 1925 3 727 2461 132 38 17 chr9 18723898 18724320 -105351852 + RMER16-int LTR ERVK 1060 1490 -3916 3 727 2307 131 27 3 chr9 18724319 18724688 -105351484 + RMER16-int LTR ERVK 2915 3292 -2114 3 727 749 156 71 18 chr9 18724672 18724842 -105351330 + RMER16-int LTR ERVK 3502 3680 -1726 3 727 518 332 2 3 chr9 18724905 18725149 -105351023 + RLTR6-int LTR ERV1 7141 7491 -287 3 727 2775 89 37 96 chr9 18725469 18725981 -105350191 - RLTR45 LTR ERVK 0 482 1 3 727 18613 36 2 0 chr9 18725981 18728158 -105348014 - RLTR45-int LTR ERVK 0 7244 5064 3 727 20335 43 29 9 chr9 18728150 18730766 -105345406 - RLTR45-int LTR ERVK -3258 3986 1318 3 727 6363 48 31 6 chr9 18731553 18732351 -105343821 - RLTR45-int LTR ERVK -6426 818 1 3 727 2537 126 40 87 chr9 18732351 18732857 -105343315 - RLTR45 LTR ERVK 0 482 1 3 727 484 304 114 65 chr9 18733081 18733422 -105342750 + RLTR9A LTR ERVK 8 365 -3 3 727 3947 159 34 16 chr9 18733425 18734432 -105341740 - Lx2B LINE L1 -845 6155 5126 3 727 2549 118 27 107 chr9 18734432 18734956 -105341216 - RLTR45 LTR ERVK 0 482 1 3 727 3947 180 52 30 chr9 18734956 18735056 -105341116 - Lx2B LINE L1 -761 5125 5026 3 727 3148 183 7 2 chr9 18735064 18735629 -105340543 + Lx2B LINE L1 6430 6997 -3 3 727 678 233 14 0 chr9 18735659 18735805 -105340367 + B1_Mur4 SINE Alu 3 150 0 3 727 269 279 9 9 chr9 18735979 18736084 -105340088 + Lx9 LINE L1 7314 7418 -226 3 727 629 92 10 0 chr9 18736086 18736184 -105339988 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 727 522 0 0 0 chr9 18736317 18736375 -105339797 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3 727 1090 103 0 0 chr9 18736733 18736878 -105339294 + B1_Mus2 SINE Alu 2 146 -1 3 727 319 360 35 75 chr9 18737366 18737594 -105338578 + MTE-int LTR MaLR 824 1042 -538 3 727 3653 59 2 0 chr9 18737754 18738215 -105337957 - L1Md_F2 LINE L1 -2 6580 6119 3 727 1700 47 47 0 chr9 18738215 18738427 -105337745 + L1_Mm LINE L1 5363 5584 -299 3 727 1333 256 72 27 chr9 18739042 18739628 -105336544 - L1_Rod LINE L1 -4005 1842 1231 3 727 353 282 99 9 chr9 18739629 18739740 -105336432 - RMER20B LTR ERVK -25 602 482 3 727 1594 277 115 22 chr9 18739709 18740255 -105335917 - RMER20B LTR ERVK -28 599 3 3 727 1317 280 33 14 chr9 18740260 18740742 -105335430 - L1_Rod LINE L1 -6426 1182 692 3 727 192 125 0 0 chr9 18741153 18741185 -105334987 + (T)n Simple_repeat Simple_repeat 1 32 0 3 727 326 302 5 43 chr9 18741794 18741981 -105334191 + CT-rich Low_complexity Low_complexity 1 180 0 3 727 21 82 0 0 chr9 18742883 18742932 -105333240 + AT_rich Low_complexity Low_complexity 1 49 0 3 728 349 337 50 78 chr9 18743472 18743691 -105332481 - RMER12 LTR ERVK -10 1312 1100 3 728 488 168 20 0 chr9 18743828 18743929 -105332243 - RLTR22_Mur LTR ERVK -1043 805 703 3 728 2508 180 20 14 chr9 18743929 18744426 -105331746 - RLTR22_Mur LTR ERVK -1348 500 1 3 728 512 303 78 6 chr9 18744560 18744726 -105331446 + B3 SINE B2 2 179 -37 3 728 270 0 0 0 chr9 18744737 18744767 -105331405 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3 728 306 0 0 0 chr9 18744953 18744987 -105331185 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 728 26 64 0 0 chr9 18745078 18745125 -105331047 + AT_rich Low_complexity Low_complexity 1 47 0 3 728 535 73 327 9 chr9 18745650 18745760 -105330412 - B2_Mm2 SINE B2 -4 191 47 3 728 996 172 0 16 chr9 18745780 18745963 -105330209 - B2_Mm2 SINE B2 -14 181 2 3 728 26 50 0 0 chr9 18746219 18746259 -105329913 + AT_rich Low_complexity Low_complexity 1 40 0 3 728 48 18 0 0 chr9 18747052 18747107 -105329065 + AT_rich Low_complexity Low_complexity 1 55 0 3 728 969 143 0 20 chr9 18747198 18747348 -105328824 + B1_Mus1 SINE Alu 1 147 -1 3 728 243 320 175 0 chr9 18747819 18747922 -105328250 - B3A SINE B2 -77 121 1 3 728 336 328 137 0 chr9 18748568 18748699 -105327473 + B1_Mur1 SINE Alu 1 149 0 3 728 25 0 0 0 chr9 18748828 18748853 -105327319 + AT_rich Low_complexity Low_complexity 1 25 0 3 728 401 350 11 37 chr9 18750415 18750605 -105325567 - RMER15 LTR ERVL -135 440 256 3 728 22 35 0 0 chr9 18750708 18750737 -105325435 + AT_rich Low_complexity Low_complexity 1 29 0 3 728 27 29 0 0 chr9 18750965 18750999 -105325173 + AT_rich Low_complexity Low_complexity 1 34 0 3 728 375 23 0 0 chr9 18751267 18751311 -105324861 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 728 647 166 245 0 chr9 18751344 18751483 -105324689 - B2_Mm2 SINE B2 -18 177 5 3 728 26 64 0 0 chr9 18751486 18751533 -105324639 + AT_rich Low_complexity Low_complexity 1 47 0 3 728 455 371 7 0 chr9 18751533 18751684 -105324488 - RSINE1 SINE B4 -4 161 10 3 728 36 0 0 0 chr9 18752906 18752942 -105323230 + AT_rich Low_complexity Low_complexity 1 36 0 3 728 899 241 13 18 chr9 18753352 18753580 -105322592 - Lx9 LINE L1 -131 7513 7287 3 728 297 0 0 0 chr9 18753748 18753781 -105322391 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 728 21 0 0 0 chr9 18754763 18754784 -105321388 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 589 249 75 62 chr9 18754897 18755205 -105320967 + Lx7 LINE L1 7255 7566 -130 3 728 323 185 0 0 chr9 18755499 18755553 -105320619 + MurSatRep1 Unknown Unknown 224 277 -1860 3 728 406 245 9 67 chr9 18755554 18755659 -105320513 + B1_Mus2 SINE Alu 49 147 0 3 728 23 33 0 0 chr9 18756654 18756684 -105319488 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 11791 118 15 56 chr9 18757224 18759734 -105316438 - L1_Mus3 LINE L1 -3 6635 4211 3 728 378 0 0 0 chr9 18759734 18759776 -105316396 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 728 342 98 0 0 chr9 18759776 18759826 -105316346 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 728 11791 125 25 51 chr9 18759826 18760115 -105316057 - L1_Mus3 LINE L1 -1673 4210 3949 3 728 1056 115 0 0 chr9 18760115 18760263 -105315909 - B1_Mus1 SINE Alu 0 148 1 3 728 11791 125 25 51 chr9 18760263 18760355 -105315817 - L1_Mus3 LINE L1 -1935 3948 3864 3 728 364 169 0 0 chr9 18760359 18760424 -105315748 + RMER19C LTR ERVK 545 609 -2 3 728 1488 306 77 11 chr9 18760428 18761042 -105315130 + MERVL_2A-int LTR ERVL 302 955 -4806 3 728 733 251 10 10 chr9 18761056 18761257 -105314915 + MERVL_2A-int LTR ERVL 994 1194 -4567 3 728 4209 184 58 43 chr9 18761257 18762201 -105313971 + RMER17B LTR ERVK 1 958 0 3 728 2835 257 14 33 chr9 18762201 18762270 -105313902 + MERVL_2A-int LTR ERVL 1193 1261 -4500 3 728 3609 78 2 0 chr9 18762270 18762744 -105313428 + MT2C_Mm LTR ERVL 1 475 0 3 728 2835 257 14 33 chr9 18762744 18763459 -105312713 + MERVL_2A-int LTR ERVL 1262 1962 -3799 3 728 1737 218 73 13 chr9 18763496 18763877 -105312295 + MTC LTR MaLR 10 413 -8 3 728 354 191 0 0 chr9 18763885 18763948 -105312224 + MERVL_2A-int LTR ERVL 1997 2059 -3702 3 728 6817 137 8 28 chr9 18764012 18765217 -105310955 - L1_Mm LINE L1 -1368 4515 3336 3 728 5990 138 76 11 chr9 18765217 18765440 -105310732 + RMER16-int LTR ERVK 420 701 -4705 3 728 455 0 18 0 chr9 18765440 18765495 -105310677 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 3 728 5990 138 76 11 chr9 18765495 18766351 -105309821 + RMER16-int LTR ERVK 702 1569 -3837 3 728 589 299 6 0 chr9 18766471 18766645 -105309527 + ETnERV-int LTR ERVK 1415 1589 -1725 3 728 330 216 60 67 chr9 18766682 18766816 -105309356 + ETnERV-int LTR ERVK 2145 2277 -3890 3 728 6489 163 51 6 chr9 18766952 18768149 -105308023 + RMER16-int LTR ERVK 1566 2816 -2590 3 728 3784 80 110 9 chr9 18768150 18768696 -105307476 - L1Md_F2 LINE L1 -13 6569 5969 3 728 3668 34 2 0 chr9 18768698 18769243 -105306929 + L1Md_F2 LINE L1 5474 6019 -563 3 728 3068 130 19 2 chr9 18769243 18769722 -105306450 + RMER16-int LTR ERVK 2806 3292 -2114 3 728 904 150 63 16 chr9 18769706 18769795 -105306377 + RMER16-int LTR ERVK 3502 3599 -1807 3 728 189 0 0 0 chr9 18769795 18769816 -105306356 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 728 904 150 63 16 chr9 18769816 18769916 -105306256 + RMER16-int LTR ERVK 3600 3700 -1706 3 728 623 341 7 3 chr9 18770037 18770372 -105305800 + RLTR6-int LTR ERV1 7328 7567 -211 3 728 251 336 15 39 chr9 18770497 18770627 -105305545 + IAP-d-int LTR ERVK 6386 6512 -30 3 728 383 286 113 102 chr9 18770790 18770971 -105305201 + RLTR9A LTR ERVK 8 200 -168 3 728 4251 172 73 11 chr9 18770971 18771392 -105304780 + RMER17A2 LTR ERVK 1 445 -461 3 728 324 0 0 0 chr9 18771392 18771428 -105304744 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 728 4251 172 73 11 chr9 18771428 18771859 -105304313 + RMER17A2 LTR ERVK 446 905 -1 3 728 383 286 113 102 chr9 18771859 18772031 -105304141 + RLTR9A LTR ERVK 201 364 -4 3 728 3919 170 29 22 chr9 18772036 18773150 -105303022 - Lx2B LINE L1 -847 6153 5026 3 728 3158 162 11 4 chr9 18773163 18773720 -105302452 + Lx2B LINE L1 6437 6997 -3 3 728 796 211 7 0 chr9 18773749 18773896 -105302276 + B1_Mur4 SINE Alu 3 150 0 3 728 278 282 8 25 chr9 18774068 18774188 -105301984 + Lx9 LINE L1 7314 7431 -213 3 728 269 169 17 0 chr9 18774188 18774247 -105301925 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 728 526 14 0 27 chr9 18774376 18774449 -105301723 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 3 728 358 373 25 56 chr9 18775270 18775466 -105300706 + MTE-int LTR MaLR 793 982 -598 3 728 200 59 29 0 chr9 18775880 18775914 -105300258 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 728 1435 235 82 31 chr9 18776513 18777098 -105299074 - L1_Rod LINE L1 -4005 1842 1228 3 728 1009 260 185 13 chr9 18777196 18777665 -105298507 - RMER20B LTR ERVK -28 599 50 3 728 1281 283 51 11 chr9 18777709 18778181 -105297991 - L1_Rod LINE L1 -6426 1182 692 3 728 382 263 0 87 chr9 18779215 18779411 -105296761 + CT-rich Low_complexity Low_complexity 1 179 0 3 728 21 57 0 0 chr9 18780253 18780288 -105295884 + AT_rich Low_complexity Low_complexity 1 35 0 3 728 26 88 0 0 chr9 18780350 18780418 -105295754 + AT_rich Low_complexity Low_complexity 1 68 0 3 728 271 320 58 95 chr9 18780929 18781119 -105295053 - RMER12 LTR ERVK -11 1311 1129 3 728 530 160 10 0 chr9 18781286 18781386 -105294786 - RLTR22_Mur LTR ERVK -1045 803 703 4 728 1768 193 117 36 chr9 18781400 18781696 -105294476 - RLTR22_Mur LTR ERVK -1366 482 153 4 728 351 0 0 0 chr9 18781696 18781735 -105294437 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 728 1768 193 117 36 chr9 18781735 18781884 -105294288 - RLTR22_Mur LTR ERVK -1696 152 2 4 728 209 98 0 24 chr9 18782004 18782046 -105294126 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 728 604 280 73 11 chr9 18782054 18782245 -105293927 + B3 SINE B2 2 198 0 4 728 333 0 0 0 chr9 18782433 18782470 -105293702 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 728 30 77 0 0 chr9 18782582 18782647 -105293525 + AT_rich Low_complexity Low_complexity 1 65 0 4 728 46 54 0 0 chr9 18783290 18783364 -105292808 + AT_rich Low_complexity Low_complexity 1 74 0 4 728 899 157 0 13 chr9 18783395 18783544 -105292628 - B1_Mus1 SINE Alu 0 148 2 4 728 35255 36 1 1 chr9 18784844 18790898 -105285274 + L1Md_Gf LINE L1 1 5580 -306 4 728 8916 7 0 4 chr9 18790907 18791907 -105284265 + L1Md_T LINE L1 5587 6582 0 4 728 241 340 88 41 chr9 18791907 18791920 -105284252 + ID_B1 SINE B4 78 161 -63 4 728 319 279 147 1 chr9 18791920 18792037 -105284135 + B1_Mm SINE Alu 10 139 -8 4 728 183 227 22 22 chr9 18793308 18793353 -105282819 - L2c LINE L2 -62 3325 3281 4 728 386 360 6 12 chr9 18793742 18793908 -105282264 - RMER15 LTR ERVL -122 453 289 4 728 29 28 0 0 chr9 18794305 18794341 -105281831 + AT_rich Low_complexity Low_complexity 1 36 0 4 728 544 159 233 27 chr9 18794663 18794809 -105281363 - B2_Mm2 SINE B2 -15 180 5 4 728 3404 130 13 19 chr9 18795117 18795640 -105280532 - RLTR13D3 LTR ERVK 0 1114 592 4 728 3142 48 128 0 chr9 18795640 18796061 -105280111 - IAPLTR2_Mm LTR ERVK 0 475 1 4 728 3404 130 13 19 chr9 18796061 18796076 -105280096 - RLTR13D3 LTR ERVK -523 591 579 4 728 6063 73 12 11 chr9 18796076 18796889 -105279283 - IAPEz-int LTR ERVK -15 6466 5653 4 728 10902 66 43 32 chr9 18796884 18798400 -105277772 - IAPEz-int LTR ERVK -4781 1700 168 4 728 250 283 0 0 chr9 18798400 18798453 -105277719 - RLTR27 LTR ERVK -34 275 223 4 728 267 62 0 0 chr9 18798453 18798485 -105277687 - IAPEz-int LTR ERVK -1785 202 171 4 728 225 184 0 0 chr9 18798485 18798523 -105277649 - RLTR27 LTR ERVK -41 268 231 4 728 932 110 82 92 chr9 18798525 18798733 -105277439 - IAPEz-int LTR ERVK -1784 203 3 4 728 3121 30 167 0 chr9 18798735 18799142 -105277030 - IAPLTR2_Mm LTR ERVK 0 475 1 4 728 3814 112 13 2 chr9 18799142 18799689 -105276483 - RLTR13D3 LTR ERVK -517 597 45 4 728 30 27 0 0 chr9 18800808 18800845 -105275327 + AT_rich Low_complexity Low_complexity 1 37 0 4 728 839 255 53 16 chr9 18801261 18801504 -105274668 - Lx9 LINE L1 -136 7508 7257 4 728 4768 146 22 0 chr9 18802212 18803574 -105272598 - L1Md_F LINE L1 -1931 1886 494 4 728 767 289 4 30 chr9 18804408 18804640 -105271532 + RMER19B LTR ERVK 675 900 -2 4 728 5070 268 51 24 chr9 18804644 18806262 -105269910 + MERVL_2A-int LTR ERVL 302 1963 -3798 4 728 1705 248 43 10 chr9 18806298 18806697 -105269475 + MTC LTR MaLR 10 421 0 4 728 285 226 0 0 chr9 18806697 18806759 -105269413 + MERVL_2A-int LTR ERVL 1997 2058 -3703 4 728 2073 248 64 7 chr9 18806773 18807350 -105268822 + MERVL_2A-int LTR ERVL 2000 2609 -3152 4 728 639 226 97 0 chr9 18807359 18807514 -105268658 - ORR1C2 LTR MaLR 0 384 215 4 728 2391 206 55 13 chr9 18807521 18808046 -105268126 - RLTR20A1 LTR ERVK -4 547 1 4 728 533 299 112 5 chr9 18808046 18808229 -105267943 - ORR1C2 LTR MaLR -162 212 10 4 728 1422 244 57 16 chr9 18808236 18808619 -105267553 + MERVL_2A-int LTR ERVL 2612 3010 -2751 4 728 449 248 26 0 chr9 18808630 18808747 -105267425 + MERVL_2A-int LTR ERVL 3843 3962 -1799 4 728 7061 191 17 19 chr9 18808918 18810647 -105265525 + L1VL4 LINE L1 584 2314 -1245 4 728 1063 195 127 46 chr9 18810647 18810954 -105265218 + IAPEY3_LTR LTR ERVK 1 332 0 4 728 7061 190 18 18 chr9 18810954 18811061 -105265111 + L1VL4 LINE L1 2315 2425 -1134 4 728 1328 158 14 14 chr9 18811054 18811331 -105264841 + L1VL4 LINE L1 2851 3127 -432 4 728 7884 149 18 32 chr9 18811326 18812900 -105263272 + Lx3C LINE L1 5428 6969 -7 4 728 6685 204 40 6 chr9 18812913 18814445 -105261727 + Lx2B LINE L1 3470 5053 -833 4 728 2268 65 70 18 chr9 18814567 18814896 -105261276 + ORR1A1 LTR MaLR 1 346 0 4 728 22 0 0 0 chr9 18815795 18815817 -105260355 + AT_rich Low_complexity Low_complexity 1 22 0 4 728 6623 182 25 1 chr9 18816172 18817947 -105258225 + Lx2B LINE L1 5048 6866 -134 4 728 1830 160 88 16 chr9 18817956 18818343 -105257829 + RLTR9F LTR ERVK 1 415 0 4 728 693 248 59 71 chr9 18818345 18818667 -105257505 + ETnERV2-int LTR ERVK 3 320 -2994 4 728 558 0 0 0 chr9 18818667 18818729 -105257443 + (TAAAA)n Simple_repeat Simple_repeat 4 65 0 4 728 1190 134 182 30 chr9 18818729 18818998 -105257174 + ETnERV2-int LTR ERVK 1074 1383 -6023 4 728 3112 112 37 6 chr9 18818988 18819501 -105256671 + ETnERV2-int LTR ERVK 1557 2085 -5321 4 728 2496 137 49 7 chr9 18819526 18819937 -105256235 + ETnERV2-int LTR ERVK 2496 2923 -4483 4 728 3379 31 61 55 chr9 18819938 18820410 -105255762 - IAPLTR2_Mm LTR ERVK 0 475 1 4 728 6485 52 12 13 chr9 18820412 18821242 -105254930 - IAPEz-int LTR ERVK -2 6479 5651 4 728 10865 60 41 33 chr9 18821235 18822714 -105253458 - IAPEz-int LTR ERVK -4781 1700 211 4 728 878 77 8 0 chr9 18822714 18822831 -105253341 - IAPEz-int LTR ERVK -6196 285 168 4 728 248 283 0 0 chr9 18822831 18822884 -105253288 - RLTR27 LTR ERVK -34 275 223 4 728 879 154 15 85 chr9 18822886 18823085 -105253087 - IAPEz-int LTR ERVK -6288 193 9 4 728 2900 30 190 2 chr9 18823086 18823486 -105252686 - IAPLTR2_Mm LTR ERVK 0 475 1 4 728 6986 169 24 43 chr9 18823486 18825919 -105250253 + ETnERV2-int LTR ERVK 1861 6425 -981 4 728 383 118 29 14 chr9 18826137 18826206 -105249966 + ETnERV2-int LTR ERVK 7331 7400 -6 4 728 1989 156 63 10 chr9 18826211 18826605 -105249567 + RLTR9F LTR ERVK 1 415 0 4 728 393 211 17 60 chr9 18826606 18826722 -105249450 + Lx2B LINE L1 6889 6999 -1 4 728 18848 126 17 6 chr9 18826771 18827930 -105248242 - L1VL1 LINE L1 -1537 4346 3171 4 728 332 22 22 0 chr9 18827930 18827975 -105248197 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 4 728 18848 126 16 6 chr9 18827975 18830017 -105246155 - L1VL1 LINE L1 -2713 3170 1112 4 728 1419 164 142 118 chr9 18830020 18830484 -105245688 - ETnERV2-int LTR ERVK -1896 5348 4874 4 728 4541 127 17 1 chr9 18830488 18831182 -105244990 - ETnERV2-int LTR ERVK -3135 4271 3567 4 728 1050 253 66 21 chr9 18831208 18831495 -105244677 - ETnERV2-int LTR ERVK -4653 2753 2454 4 728 399 175 268 0 chr9 18831508 18831605 -105244567 - RMER16-int LTR ERVK -5077 1060 938 4 728 2150 167 154 30 chr9 18831610 18832116 -105244056 - RMER16-int LTR ERVK -4587 819 251 4 728 667 259 14 0 chr9 18833037 18833176 -105242996 - ETnERV2-int LTR ERVK -204 7202 7062 4 728 2948 182 90 10 chr9 18834800 18835301 -105240871 + Lx3C LINE L1 6353 6852 -124 4 728 189 0 0 0 chr9 18835301 18835322 -105240850 + (TGG)n Simple_repeat Simple_repeat 1 21 0 4 728 2948 182 90 10 chr9 18835322 18835396 -105240776 + Lx3C LINE L1 6853 6973 -3 4 728 203 103 0 25 chr9 18835397 18835437 -105240735 + (TAA)n Simple_repeat Simple_repeat 1 39 0 4 728 455 303 114 64 chr9 18835440 18835676 -105240496 + B4 SINE B4 27 274 -18 4 728 513 32 0 0 chr9 18835703 18835766 -105240406 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 728 330 67 0 0 chr9 18836178 18836223 -105239949 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 728 851 245 116 3 chr9 18838763 18839074 -105237098 + Lx9 LINE L1 7294 7639 -5 4 728 198 0 0 0 chr9 18840537 18840559 -105235613 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 728 327 333 52 43 chr9 18840750 18840960 -105235212 - B3 SINE B2 0 216 5 4 728 822 94 0 0 chr9 18842132 18842249 -105233923 + (TA)n Simple_repeat Simple_repeat 1 117 0 4 728 742 305 57 55 chr9 18842398 18842783 -105233389 - Lx8 LINE L1 -5 7468 7083 4 728 204 56 27 27 chr9 18843426 18843463 -105232709 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 4 728 1251 362 38 28 chr9 18844108 18844934 -105231238 + Lx8 LINE L1 6291 7124 -349 4 728 567 344 33 10 chr9 18845132 18845523 -105230649 + L1_Rod LINE L1 5431 5830 -17 4 728 617 195 0 10 chr9 18845818 18845953 -105230219 + L1_Mur3 LINE L1 5667 5808 -489 4 728 6751 139 29 8 chr9 18845980 18847110 -105229062 - Lx3A LINE L1 -3 6978 5825 4 728 6157 128 15 11 chr9 18847111 18848103 -105228069 - Lx3A LINE L1 -187 5699 4704 4 728 2150 108 0 43 chr9 18848104 18848454 -105227718 + Lx3A LINE L1 4356 4690 -1196 4 728 462 36 0 0 chr9 18848474 18848530 -105227642 + (GAAA)n Simple_repeat Simple_repeat 3 58 0 4 728 3137 152 51 3 chr9 18848612 18849156 -105227016 + L1_Mur1 LINE L1 5322 5875 -11 4 728 1703 112 4 0 chr9 18849154 18849421 -105226751 - L1_Mur1 LINE L1 -515 5371 5104 4 728 2818 258 69 25 chr9 18849418 18850285 -105225887 + Lx6 LINE L1 5766 6670 -790 4 728 1253 113 16 88 chr9 18850287 18850538 -105225634 - RMER16-int LTR ERVK -4207 1199 967 4 728 3263 37 12 19 chr9 18850544 18850958 -105225214 - IAPLTR2a LTR ERVK 0 411 1 4 728 6497 48 12 18 chr9 18850960 18851794 -105224378 - IAPEz-int LTR ERVK -2 6479 5651 4 728 2753 53 0 3 chr9 18851787 18852130 -105224042 - IAPEz-int LTR ERVK -4781 1700 1359 4 728 3537 63 1 16 chr9 18852130 18852708 -105223464 - IAPEz-int LTR ERVK -5819 662 168 4 728 237 302 0 0 chr9 18852708 18852761 -105223411 - RLTR27 LTR ERVK -34 275 223 4 728 1064 147 72 76 chr9 18852761 18853012 -105223160 - IAPEz-int LTR ERVK -7329 252 3 4 728 3284 35 12 19 chr9 18853014 18853428 -105222744 - IAPLTR2a LTR ERVK 0 411 1 4 728 584 203 8 16 chr9 18853432 18853557 -105222615 - RMER16-int LTR ERVK -4441 965 842 4 728 562 184 197 110 chr9 18853564 18853837 -105222335 - RLTR45-int LTR ERVK -4919 2325 2080 4 728 453 50 0 0 chr9 18853837 18853897 -105222275 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 728 1293 197 52 31 chr9 18854321 18854336 -105221836 + RLTR22_Mur LTR ERVK 1553 1563 -285 4 728 980 227 63 95 chr9 18854336 18854716 -105221456 - RLTR9A LTR ERVK 0 368 1 4 728 1293 197 52 31 chr9 18854716 18854988 -105221184 + RLTR22_Mur LTR ERVK 1564 1846 -2 4 728 2196 210 139 21 chr9 18854990 18855008 -105221164 - L1_Mur3 LINE L1 -3060 2820 2799 4 728 234 62 0 0 chr9 18855008 18855040 -105221132 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 728 2196 211 139 21 chr9 18855040 18855715 -105220457 - L1_Mur3 LINE L1 -3082 2798 2047 4 728 3276 130 77 26 chr9 18855760 18856338 -105219834 - RMER17A2 LTR ERVK -240 666 55 4 728 4027 40 2 2 chr9 18856338 18856820 -105219352 + LTRIS_Mm LTR ERV1 1 482 0 4 728 3276 130 77 26 chr9 18856820 18856865 -105219307 - RMER17A2 LTR ERVK -852 54 11 4 728 27 29 0 0 chr9 18856874 18856908 -105219264 + AT_rich Low_complexity Low_complexity 1 34 0 4 728 1056 217 129 42 chr9 18856908 18857172 -105219000 - Lx4A LINE L1 0 7058 6772 4 728 275 87 22 0 chr9 18857239 18857285 -105218887 - L1_Mur2 LINE L1 -2554 3323 3277 4 728 1761 250 43 70 chr9 18857290 18857849 -105218323 - RLTR20B3 LTR ERVK -13 564 21 4 728 7179 225 39 19 chr9 18857853 18859830 -105216342 - L1_Mur2 LINE L1 -2595 3282 1266 4 728 238 35 0 0 chr9 18859830 18859859 -105216313 + RLTR22_Mus LTR ERVK 1 29 -1779 4 728 2052 91 12 54 chr9 18859859 18860195 -105215977 - RLTRETN_Mm LTR ERVK 0 322 1 4 728 9078 139 43 30 chr9 18860195 18862188 -105213984 - MMETn-int LTR ERVK 0 4844 3219 4 728 23660 74 16 33 chr9 18862186 18866094 -105210078 - MMETn-int LTR ERVK -2295 5111 2 4 728 2050 91 12 56 chr9 18866095 18866432 -105209740 - RLTRETN_Mm LTR ERVK 0 322 1 4 728 5335 106 2 2 chr9 18866432 18866690 -105209482 + RLTR22_Mus LTR ERVK 24 282 -1526 4 728 5878 101 27 2 chr9 18866690 18867556 -105208616 - L1_Mus3 LINE L1 -2 6636 5750 4 728 5335 106 2 2 chr9 18867556 18868085 -105208087 + RLTR22_Mus LTR ERVK 283 811 -997 4 728 427 295 142 20 chr9 18868364 18868561 -105207611 + RMER12 LTR ERVK 1102 1322 0 4 728 835 204 202 27 chr9 18868563 18868648 -105207524 - L1_Mur2 LINE L1 -5817 1269 1126 4 728 3605 179 25 12 chr9 18868648 18869331 -105206841 - RLTR17 LTR ERVK 0 692 1 4 728 835 218 199 25 chr9 18869331 18869581 -105206591 - L1_Mur2 LINE L1 -5457 1177 879 4 728 27 49 0 0 chr9 18870230 18870271 -105205901 + AT_rich Low_complexity Low_complexity 1 41 0 4 728 21 36 0 0 chr9 18870820 18870848 -105205324 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 616 324 72 24 chr9 18871069 18871442 -105204730 + Lx8 LINE L1 7081 7471 -2 4 728 21 0 0 0 chr9 18871503 18871524 -105204648 + AT_rich Low_complexity Low_complexity 1 21 0 4 728 624 112 34 6 chr9 18872087 18872200 -105203972 - Lx3C LINE L1 -1097 5879 5760 4 728 549 95 0 0 chr9 18872235 18872319 -105203853 - Lx2 LINE L1 -2 6995 6912 4 728 627 292 0 12 chr9 18872323 18872489 -105203683 + L1VL4 LINE L1 421 568 -5790 4 11 10410 224 236 9 chr9 18872497 18876232 -105199940 - L1VL4 LINE L1 -96 5787 1187 4 729 1454 53 27 0 chr9 18876232 18876419 -105199753 - B2_Mm1t SINE B2 0 193 2 4 729 1646 231 62 43 chr9 18876419 18876871 -105199301 - L1VL4 LINE L1 -5798 1186 709 4 729 251 247 52 0 chr9 18877253 18877350 -105198822 + Lx9 LINE L1 7390 7491 -153 4 729 237 108 0 0 chr9 18877483 18877520 -105198652 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 729 2686 78 8 3 chr9 18877775 18878135 -105198037 - L1_Mus1 LINE L1 -1 6566 6205 4 729 815 269 60 61 chr9 18878332 18878830 -105197342 - RMER2 LTR ERV1 0 567 1 4 729 234 271 0 0 chr9 18878948 18879007 -105197165 + RMER5 LTR ERV1 217 275 -259 5 729 622 188 0 0 chr9 18879020 18879132 -105197040 - L1_Mur2 LINE L1 -875 5002 4891 5 729 2268 234 36 45 chr9 18879134 18879693 -105196479 + RMER2 LTR ERV1 1 554 -13 5 729 275 297 100 52 chr9 18881063 18881312 -105194860 + RLTR6-int LTR ERV1 1422 1682 -6096 5 729 533 297 27 52 chr9 18881514 18881767 -105194405 + RLTR6-int LTR ERV1 1902 2311 -5467 5 729 420 226 51 25 chr9 18881940 18882058 -105194114 + RLTR6-int LTR ERV1 3515 3635 -3817 5 729 33662 89 6 3 chr9 18882240 18888157 -105188015 - L1Md_F2 LINE L1 -11 6571 632 5 729 283 329 92 13 chr9 18888237 18888570 -105187602 + RLTR6-int LTR ERV1 4054 4558 -3220 5 729 1263 328 56 54 chr9 18888934 18889439 -105186733 + MuRRS4-int LTR ERV1 3165 4010 -1053 5 729 271 344 15 15 chr9 18889591 18889726 -105186446 + RLTR6-int LTR ERV1 5493 5686 -2092 5 729 627 241 14 0 chr9 18889861 18890002 -105186170 - MTC LTR MaLR -265 156 14 5 729 327 164 0 0 chr9 18890015 18890070 -105186102 - L1_Mur3 LINE L1 -1258 4622 4568 5 729 978 83 0 0 chr9 18890084 18890216 -105185956 + B1_Mus1 SINE Alu 7 138 -10 5 729 252 0 0 0 chr9 18890216 18890244 -105185928 + (CAA)n Simple_repeat Simple_repeat 2 29 0 5 729 903 19 0 0 chr9 18890271 18890376 -105185796 + (GGAAA)n Simple_repeat Simple_repeat 5 109 0 5 729 225 91 0 0 chr9 18890397 18890430 -105185742 - L1_Mur3 LINE L1 -1325 4555 4523 5 729 1300 196 51 9 chr9 18890470 18890785 -105185387 - L1_Mur3 LINE L1 -1609 4271 3944 5 729 7639 61 16 2 chr9 18890761 18891923 -105184249 - L1Md_F2 LINE L1 -12 6570 5393 5 729 2142 220 24 16 chr9 18891921 18892499 -105183673 - L1_Mur3 LINE L1 -1902 3978 3396 5 729 21 0 0 0 chr9 18892500 18892521 -105183651 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 847 210 20 79 chr9 18892526 18892779 -105183393 - Lx3C LINE L1 0 6976 6739 5 729 468 246 94 28 chr9 18892778 18892805 -105183367 - L1_Mur3 LINE L1 -524 3390 3357 5 729 252 0 0 0 chr9 18892805 18892833 -105183339 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 729 634 171 35 10 chr9 18892833 18893018 -105183154 - L1_Mur3 LINE L1 -2529 3357 3162 5 729 1025 272 135 90 chr9 18893187 18893577 -105182595 - RMER12 LTR ERVK -100 1222 777 5 729 273 57 0 0 chr9 18893577 18893612 -105182560 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 729 1025 290 100 84 chr9 18893612 18893997 -105182175 - RMER12 LTR ERVK -420 984 573 5 729 2117 242 52 63 chr9 18893991 18894608 -105181564 - RMER12 LTR ERVK -712 610 1 5 729 180 0 0 0 chr9 18894614 18894634 -105181538 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 729 7792 167 33 20 chr9 18894667 18897086 -105179086 - Lx2 LINE L1 -6 6991 4546 5 729 2694 106 15 29 chr9 18897797 18898206 -105177966 + RLTR9D LTR ERVK 1 403 0 5 729 3231 228 66 67 chr9 18898244 18898602 -105177570 + ETnERV2-int LTR ERVK 28 386 -2928 5 729 492 48 0 0 chr9 18898602 18898665 -105177507 + (TAAAA)n Simple_repeat Simple_repeat 4 66 0 5 729 5935 169 60 43 chr9 18898665 18900722 -105175450 + ETnERV2-int LTR ERVK 2041 4247 -2997 5 729 748 116 45 23 chr9 18900944 18901076 -105175096 + ETnERV2-int LTR ERVK 3441 3575 -3831 5 729 2261 224 43 73 chr9 18901086 18902129 -105174043 + ETnERV2-int LTR ERVK 3574 4176 -1230 5 729 354 178 14 0 chr9 18902339 18902412 -105173760 + ETnERV2-int LTR ERVK 7331 7404 -2 5 729 2834 102 2 15 chr9 18902413 18902821 -105173351 + RLTR9D LTR ERVK 1 403 0 5 729 1119 62 0 27 chr9 18902940 18902951 -105173221 - B1_Mm SINE Alu 0 147 139 5 729 281 26 26 0 chr9 18902951 18902989 -105173183 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 729 1119 62 0 27 chr9 18902989 18903127 -105173045 - B1_Mm SINE Alu -9 138 2 5 729 658 322 49 31 chr9 18903188 18903512 -105172660 + Lx8 LINE L1 6785 7114 -359 5 729 237 65 0 0 chr9 18903715 18903746 -105172426 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 729 2114 216 5 9 chr9 18904458 18904887 -105171285 - Lx4B LINE L1 -514 6544 6118 5 729 1786 153 28 9 chr9 18904887 18905204 -105170968 + RLTR31A_Mm LTR ERVK 1 323 -261 5 729 1182 41 7 0 chr9 18905204 18905349 -105170823 + B1_Mus2 SINE Alu 2 147 0 5 729 229 162 0 0 chr9 18905399 18905436 -105170736 + RLTR31A_Mm LTR ERVK 309 345 -239 5 729 28 0 0 0 chr9 18905583 18905611 -105170561 + AT_rich Low_complexity Low_complexity 1 28 0 5 729 4979 196 40 17 chr9 18905620 18906772 -105169400 - Lx4B LINE L1 -935 6123 4917 5 729 228 35 0 0 chr9 18906772 18906801 -105169371 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 729 378 0 0 0 chr9 18906801 18906842 -105169330 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 729 4979 202 38 25 chr9 18906842 18907036 -105169136 - Lx4B LINE L1 -961 4916 4739 5 729 1113 317 46 37 chr9 18907773 18908290 -105167882 + RodERV21-int LTR ERV1 4272 4793 -198 5 729 231 36 0 0 chr9 18908447 18908475 -105167697 + (T)n Simple_repeat Simple_repeat 1 28 0 5 729 1122 82 0 0 chr9 18908475 18908621 -105167551 - B1_Mus2 SINE Alu 0 147 2 5 729 241 148 0 36 chr9 18908793 18908849 -105167323 + (TTG)n Simple_repeat Simple_repeat 1 54 0 5 729 984 118 7 14 chr9 18908849 18908861 -105167311 - B1_Mus1 SINE Alu -1 147 136 5 729 207 0 0 0 chr9 18908861 18908884 -105167288 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 729 984 118 7 14 chr9 18908884 18909017 -105167155 - B1_Mus1 SINE Alu -13 135 3 5 729 11710 162 102 27 chr9 18909224 18910115 -105166057 - Lx4B LINE L1 -1147 4730 3798 5 729 3316 122 2 16 chr9 18910115 18910630 -105165542 - Lx LINE L1 0 6654 6147 5 729 11710 162 102 27 chr9 18910630 18911316 -105164856 - Lx4B LINE L1 -2080 3797 3149 5 729 219 36 0 0 chr9 18911316 18911344 -105164828 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 729 11710 162 102 27 chr9 18911344 18912463 -105163709 - Lx4B LINE L1 -2729 3148 1836 5 729 234 0 0 0 chr9 18912470 18912496 -105163676 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 729 1512 204 90 3 chr9 18913855 18914209 -105161963 + L1_Mus2 LINE L1 591 975 -5641 5 729 23763 132 19 36 chr9 18914192 18914742 -105161430 + L1_Mus2 LINE L1 1761 2204 -3679 5 729 7002 48 3 2 chr9 18914742 18915614 -105160558 + L1Md_F2 LINE L1 5698 6570 -12 5 729 23763 124 19 28 chr9 18915614 18919917 -105156255 + L1_Mus2 LINE L1 2205 6559 -7 5 729 5289 271 76 13 chr9 18920060 18921952 -105154220 + Lx7 LINE L1 3876 5894 -1802 5 729 180 0 0 0 chr9 18921952 18921972 -105154200 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 729 1791 274 81 22 chr9 18921972 18922408 -105153764 + Lx7 LINE L1 5895 6357 -1339 5 729 21 71 0 0 chr9 18922409 18922451 -105153721 + AT_rich Low_complexity Low_complexity 1 42 0 5 729 1277 92 10 36 chr9 18922492 18922684 -105153488 - B2_Mm2 SINE B2 -8 187 1 5 729 549 284 117 32 chr9 18923041 18923288 -105152884 + Lx5 LINE L1 6780 7047 -3 5 729 34 0 0 0 chr9 18923885 18923919 -105152253 + AT_rich Low_complexity Low_complexity 1 34 0 5 729 1187 41 7 0 chr9 18924151 18924297 -105151875 - B1_Mus2 SINE Alu 0 147 1 5 729 416 290 53 39 chr9 18926492 18926700 -105149472 - B3 SINE B2 -4 212 2 5 729 666 151 14 7 chr9 18927279 18927419 -105148753 - Lx2 LINE L1 0 6997 6857 5 729 622 301 23 50 chr9 18928197 18928417 -105147755 + MTEa LTR MaLR 14 227 -152 5 729 347 301 41 113 chr9 18929163 18929358 -105146814 - B3A SINE B2 -16 182 2 5 729 234 358 107 27 chr9 18929553 18929665 -105146507 - B1F SINE Alu -6 143 23 5 729 25 51 0 0 chr9 18930323 18930362 -105145810 + AT_rich Low_complexity Low_complexity 1 39 0 5 729 326 225 62 12 chr9 18930525 18930606 -105145566 + B4 SINE B4 1 85 -207 5 729 458 237 61 0 chr9 18930636 18930767 -105145405 + Lx9 LINE L1 7314 7452 -192 5 729 661 249 69 0 chr9 18930770 18930959 -105145213 - Lx9 LINE L1 -174 7470 7269 5 729 3958 153 68 85 chr9 18931143 18932060 -105144112 - RMER17A2 LTR ERVK -5 901 1 5 729 244 377 38 0 chr9 18932113 18932219 -105143953 - MTEa LTR MaLR -269 110 1 5 729 589 151 6 131 chr9 18932273 18932433 -105143739 + ORR1A4 LTR MaLR 1 140 -189 5 729 5004 178 33 52 chr9 18932433 18934166 -105142006 + Lx3C LINE L1 5065 6766 -210 5 729 23284 132 23 21 chr9 18934165 18939038 -105137134 - L1VL1 LINE L1 -589 5294 409 5 729 222 37 0 0 chr9 18939160 18939187 -105136985 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 729 967 239 10 13 chr9 18939194 18939449 -105136723 + Lx4B LINE L1 6783 7058 0 5 729 24 67 0 0 chr9 18939470 18939515 -105136657 + AT_rich Low_complexity Low_complexity 1 45 0 5 729 515 359 11 11 chr9 18942563 18942746 -105133426 - B3 SINE B2 -6 210 28 5 729 257 304 53 21 chr9 18942754 18942848 -105133324 + RMER12 LTR ERVK 724 820 -502 5 729 341 321 89 37 chr9 18942796 18942987 -105133185 - B3 SINE B2 -14 202 2 5 729 522 0 0 0 chr9 18943071 18943129 -105133043 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 729 290 263 0 8 chr9 18943133 18943267 -105132905 + (TG)n Simple_repeat Simple_repeat 1 133 0 5 729 392 337 32 26 chr9 18943505 18943694 -105132478 - Lx8 LINE L1 -60 7413 7224 5 729 446 354 12 12 chr9 18944241 18944407 -105131765 + MTEa LTR MaLR 14 179 -200 5 729 6342 158 16 13 chr9 18945202 18946920 -105129252 - Lx LINE L1 -1 6653 4922 5 729 1687 217 27 16 chr9 18946936 18947302 -105128870 + L1_Mus4 LINE L1 403 772 -5862 5 729 400 104 0 15 chr9 18947303 18947371 -105128801 - RMER17A LTR ERVK 0 751 685 5 729 4395 107 21 43 chr9 18947372 18948124 -105128048 + RMER17A LTR ERVK 1 736 -15 5 729 3685 136 129 57 chr9 18948148 18948925 -105127247 - RMER17D LTR ERVK -56 833 1 5 729 18704 170 68 7 chr9 18948925 18951276 -105124896 + L1_Mus4 LINE L1 768 3144 -2739 5 729 284 64 21 0 chr9 18951276 18951323 -105124849 + (CAA)n Simple_repeat Simple_repeat 2 49 0 5 729 18704 189 86 9 chr9 18951323 18952624 -105123548 + L1_Mus4 LINE L1 3145 4629 -1254 5 729 314 45 0 22 chr9 18952624 18952669 -105123503 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 729 18704 189 86 9 chr9 18952669 18952998 -105123174 + L1_Mus4 LINE L1 4630 4990 -893 5 729 4121 60 60 4 chr9 18952998 18953532 -105122640 + LTRIS2 LTR ERV1 1 564 0 5 729 18704 133 42 13 chr9 18953532 18955076 -105121096 + L1_Mus4 LINE L1 4991 6634 -2 5 729 4170 166 78 33 chr9 18955083 18956047 -105120125 + L1_Mur1 LINE L1 2147 3153 -2733 5 729 1365 192 35 81 chr9 18956054 18956399 -105119773 + ORR1A4 LTR MaLR 1 329 0 5 729 1920 248 14 15 chr9 18956630 18957084 -105119088 + BGLII_B LTR ERVK 10 433 -8 5 729 699 120 9 0 chr9 18957201 18957309 -105118863 + BC1_Mm scRNA scRNA 1 109 -43 5 729 888 37 0 0 chr9 18959003 18959111 -105117061 + (CAAGG)n Simple_repeat Simple_repeat 1 108 0 5 729 699 24 0 0 chr9 18959113 18959198 -105116974 + (CAAAC)n Simple_repeat Simple_repeat 1 85 0 5 729 247 316 0 17 chr9 18959200 18959258 -105116914 + MTE-int LTR MaLR 931 987 -593 5 729 7577 154 29 18 chr9 18959258 18959841 -105116331 - L1VL2 LINE L1 -1164 2451 1864 5 729 2791 92 77 22 chr9 18959841 18960298 -105115874 + RLTR45 LTR ERVK 1 482 0 5 729 7577 159 36 19 chr9 18960298 18961327 -105114845 - L1VL2 LINE L1 -1752 1863 827 5 729 2996 112 59 29 chr9 18961327 18961816 -105114356 - LTRIS4 LTR ERV1 -1 506 3 5 729 3114 219 127 21 chr9 18961816 18962493 -105113679 - L1VL2 LINE L1 -5509 826 50 5 729 236 238 48 0 chr9 18962524 18962587 -105113585 - L1VL2 LINE L1 -5829 506 441 5 729 2202 272 40 31 chr9 18962771 18963527 -105112645 - L1_Rod LINE L1 -3362 2485 1714 5 729 2553 114 32 2 chr9 18963527 18963933 -105112239 + BGLII LTR ERVK 1 418 -3 5 729 2202 272 40 31 chr9 18963933 18964116 -105112056 - L1_Rod LINE L1 -4134 1713 1537 5 729 970 57 0 0 chr9 18964117 18964240 -105111932 + L1_Mus1 LINE L1 5630 5752 -815 5 729 5557 172 30 26 chr9 18964242 18965581 -105110591 + L1Md_T LINE L1 99 1205 -5411 5 729 36309 32 1 0 chr9 18965587 18970001 -105106171 + L1Md_T LINE L1 1170 5586 -297 5 729 7848 58 4 0 chr9 18970001 18970993 -105105179 + L1Md_T LINE L1 5587 6582 0 5 729 491 36 0 0 chr9 18970993 18971061 -105105111 + L1_Mus3 LINE L1 5740 5807 -1201 5 729 877 246 50 15 chr9 18971073 18971333 -105104839 + MERVL_2A-int LTR ERVL 2201 2469 -3292 5 729 502 309 30 22 chr9 18971344 18971546 -105104626 - ORR1D1 LTR MaLR -171 207 1 5 729 719 228 71 0 chr9 18971546 18971730 -105104442 + MERVL_2A-int LTR ERVL 2614 2810 -2951 5 729 970 334 58 48 chr9 18971860 18972417 -105103755 - Lx8 LINE L1 -149 7324 6763 6 729 198 103 0 0 chr9 18972579 18972608 -105103564 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 729 591 256 203 3 chr9 18972623 18972909 -105103263 + RMER1C Other Other 998 1340 -2 6 729 288 0 0 0 chr9 18973617 18973649 -105102523 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 729 17546 37 4 2 chr9 18973650 18975789 -105100383 + L1Md_F2 LINE L1 3443 5586 -297 6 729 7998 49 2 1 chr9 18975789 18976781 -105099391 + L1Md_F2 LINE L1 5587 6579 -3 6 729 384 295 81 61 chr9 18977784 18978194 -105097978 - RLTR12B LTR ERVK -77 282 3 6 729 21 36 0 0 chr9 18978194 18978222 -105097950 + AT_rich Low_complexity Low_complexity 1 28 0 6 729 1309 298 71 38 chr9 18980613 18981224 -105094948 - RMER1B Other Other -11 1055 233 6 729 1104 264 59 3 chr9 18981559 18981848 -105094324 - Lx5 LINE L1 0 7050 6746 6 729 188 0 0 69 chr9 18982181 18982210 -105093962 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 6 729 1691 162 26 0 chr9 18982220 18982528 -105093644 - Lx2 LINE L1 -26 6971 6656 6 729 866 214 82 30 chr9 18982614 18982845 -105093327 - RMER1C Other Other -3 1339 1097 6 729 207 0 0 0 chr9 18982863 18982886 -105093286 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 729 1100 344 80 36 chr9 18982889 18983911 -105092261 - RMER1C Other Other -341 1001 375 6 729 244 48 48 0 chr9 18984367 18984409 -105091763 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 729 1846 274 67 56 chr9 18984499 18985138 -105091034 + Lx6 LINE L1 6814 7459 -1 6 729 5823 93 14 5 chr9 18985195 18986296 -105089876 - Lx3_Mus LINE L1 -824 6185 5070 6 729 3409 107 20 0 chr9 18986296 18986799 -105089373 + Lx3_Mus LINE L1 6497 7009 0 6 729 1116 75 6 106 chr9 18986811 18987017 -105089155 + L1Md_F2 LINE L1 6404 6582 0 6 729 260 293 17 0 chr9 18987025 18987083 -105089089 - B4A SINE B4 -218 74 16 6 729 611 57 11 0 chr9 18987852 18987940 -105088232 + (TC)n Simple_repeat Simple_repeat 2 90 0 6 729 228 35 0 0 chr9 18989653 18989682 -105086490 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 729 374 122 55 18 chr9 18989685 18989794 -105086378 + (CAGA)n Simple_repeat Simple_repeat 2 114 0 6 729 6802 250 39 19 chr9 18989856 18991763 -105084409 + MERVL_2A-int LTR ERVL 1 1945 -3816 6 729 6691 252 57 12 chr9 18991775 18995169 -105081003 + MERVL_2A-int LTR ERVL 2081 5628 -133 6 729 248 288 0 40 chr9 18995169 18995245 -105080927 + ORR1A3-int LTR MaLR 567 639 -1324 6 729 253 220 0 0 chr9 18995255 18995305 -105080867 + MERVL_2A-int LTR ERVL 5712 5761 0 6 729 441 314 61 25 chr9 18995307 18995503 -105080669 + MT2A LTR ERVL 3 205 -328 6 729 392 307 0 17 chr9 18995568 18995684 -105080488 + MT2A LTR ERVL 347 460 -73 6 729 1248 45 0 0 chr9 18995707 18995862 -105080310 + (GGGAGA)n Simple_repeat Simple_repeat 6 160 0 6 729 20691 114 7 11 chr9 18995869 18999872 -105076300 - L1_Mus1 LINE L1 0 6567 2593 6 729 969 85 0 0 chr9 18999870 19000000 -105076172 + L1_Mm LINE L1 3993 4122 -1761 6 729 9813 93 24 6 chr9 19000000 19001437 -105074735 + L1Md_F2 LINE L1 4123 5585 -298 1 729 6072 114 38 14 chr9 19001438 19002408 -105073764 + L1Md_F2 LINE L1 5587 6579 -3 1 729 226 189 14 42 chr9 19002416 19002488 -105073684 + A-rich Low_complexity Low_complexity 5 74 0 2 729 8708 165 21 10 chr9 19002669 19004970 -105071202 - L1Md_F LINE L1 -3278 2605 304 3 91 3122 29 11 0 chr9 19005081 19005457 -105070715 - L1_Mus1 LINE L1 -601 5966 5587 4 730 4494 78 0 0 chr9 19005474 19006061 -105070111 + L1_Mus1 LINE L1 5981 6567 0 4 730 779 101 8 0 chr9 19006078 19006197 -105069975 + (GA)n Simple_repeat Simple_repeat 1 120 0 5 730 21 0 0 0 chr9 19006669 19006690 -105069482 + AT_rich Low_complexity Low_complexity 1 21 0 6 730 22 0 0 0 chr9 19007085 19007107 -105069065 + AT_rich Low_complexity Low_complexity 1 22 0 7 730 329 255 33 24 chr9 19007254 19007407 -105068765 + Lx7 LINE L1 7559 7680 -16 8 730 2439 90 22 6 chr9 19007979 19008329 -105067843 + L1_Mm LINE L1 5230 5586 -297 9 730 7464 67 12 12 chr9 19008329 19009324 -105066848 + L1Md_F2 LINE L1 5587 6581 -1 1 730 2813 19 0 0 chr9 19010679 19011001 -105065171 + RLTRETN_Mm LTR ERVK 1 322 0 1 730 41156 26 3 5 chr9 19011001 19015855 -105060317 + MMETn-int LTR ERVK 1 4844 0 1 730 2870 6 0 0 chr9 19015855 19016177 -105059995 + RLTRETN_Mm LTR ERVK 1 322 0 1 730 12283 122 5 8 chr9 19016666 19018634 -105057538 - L1_Mm LINE L1 -2093 3790 1829 1 730 5513 148 36 21 chr9 19018631 19019315 -105056857 + L1_Mus2 LINE L1 4841 5547 -336 1 730 3246 79 19 37 chr9 19019315 19019799 -105056373 - IAPLTR2_Mm LTR ERVK 0 475 1 1 730 6020 123 17 36 chr9 19019799 19020839 -105055333 + L1_Mus2 LINE L1 5548 6566 0 1 730 6120 161 35 1 chr9 19020846 19021978 -105054194 + Lx LINE L1 5485 6654 0 1 730 1876 167 75 12 chr9 19024016 19024386 -105051786 + RLTR9D LTR ERVK 16 390 -3 1 730 13652 265 58 38 chr9 19024399 19028368 -105047804 + ETnERV2-int LTR ERVK 50 4772 -2634 1 730 617 36 12 0 chr9 19028368 19028452 -105047720 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 1 730 13652 163 14 11 chr9 19028452 19030164 -105046008 + ETnERV2-int LTR ERVK 4773 6429 -977 1 730 322 71 0 0 chr9 19030372 19030414 -105045758 + ETnERV2-int LTR ERVK 7331 7372 -34 1 730 4127 33 0 0 chr9 19030414 19030896 -105045276 + LTRIS_Mm LTR ERV1 1 482 0 1 730 33221 56 16 16 chr9 19030896 19034662 -105041510 + MuRRS-int LTR ERV1 1 4005 -685 1 730 255 31 0 0 chr9 19034662 19034694 -105041478 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 730 33221 55 16 17 chr9 19034694 19035390 -105040782 + MuRRS-int LTR ERV1 4006 4690 0 1 730 4153 29 2 0 chr9 19035390 19035871 -105040301 + LTRIS_Mm LTR ERV1 1 482 0 1 730 1968 174 63 8 chr9 19035908 19036290 -105039882 + RLTR9D LTR ERVK 1 403 0 2 730 297 0 0 0 chr9 19036923 19036956 -105039216 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 730 186 64 20 78 chr9 19037466 19037517 -105038655 + T-rich Low_complexity Low_complexity 3 50 0 2 730 587 343 31 19 chr9 19037981 19038302 -105037870 + L1_Rod LINE L1 71 395 -6777 2 730 978 261 69 19 chr9 19038339 19038718 -105037454 + L1_Rod LINE L1 490 887 -6285 2 730 297 263 0 0 chr9 19038849 19038925 -105037247 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 730 34 55 0 0 chr9 19038949 19039004 -105037168 + AT_rich Low_complexity Low_complexity 1 55 0 2 730 396 0 0 0 chr9 19039381 19039425 -105036747 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 730 200 35 35 0 chr9 19039425 19039454 -105036718 + (GGA)n Simple_repeat Simple_repeat 2 31 0 2 730 192 97 0 0 chr9 19039452 19039483 -105036689 + (TAG)n Simple_repeat Simple_repeat 2 32 0 2 730 21 36 0 0 chr9 19039706 19039734 -105036438 + AT_rich Low_complexity Low_complexity 1 28 0 3 730 458 313 42 23 chr9 19039752 19040105 -105036067 + L1M2 LINE L1 5391 5755 -545 3 730 233 184 0 0 chr9 19040144 19040182 -105035990 + Lx8 LINE L1 6352 6389 -1084 3 730 10711 104 34 4 chr9 19040196 19041891 -105034281 - MusHAL1 LINE L1 -2 2710 966 3 730 2764 263 47 31 chr9 19041891 19042770 -105033402 - RMER17B LTR ERVK 0 958 12 3 730 5224 103 21 31 chr9 19042773 19043667 -105032505 - MusHAL1 LINE L1 -1740 972 88 3 730 21 36 0 0 chr9 19043685 19043713 -105032459 + AT_rich Low_complexity Low_complexity 1 28 0 3 730 570 145 18 9 chr9 19043714 19043825 -105032347 - Lx LINE L1 -7 6647 6536 3 730 754 120 24 0 chr9 19043825 19043950 -105032222 - L1_Mur2 LINE L1 -1359 4518 4391 3 730 5367 145 15 51 chr9 19043929 19044904 -105031268 - L1VL4 LINE L1 -5334 968 29 3 730 501 328 116 21 chr9 19044897 19045233 -105030939 + Lx8 LINE L1 6371 6738 -735 3 730 507 171 15 37 chr9 19045412 19045546 -105030626 + GA-rich Low_complexity Low_complexity 2 132 0 4 730 509 276 15 23 chr9 19045570 19045700 -105030472 + B1_Mur4 SINE Alu 9 137 -13 4 730 216 0 0 0 chr9 19045700 19045724 -105030448 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 4 730 210 156 0 0 chr9 19045727 19045772 -105030400 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 730 2363 206 136 13 chr9 19045781 19046567 -105029605 + L1_Mur3 LINE L1 3127 4009 -1871 4 730 545 240 69 15 chr9 19046586 19046717 -105029455 + B1_Mus1 SINE Alu 1 138 -10 4 730 669 239 26 97 chr9 19046735 19046962 -105029210 + Lx7 LINE L1 5790 6000 -1696 4 730 5879 173 13 7 chr9 19047152 19048497 -105027675 + Lx LINE L1 5290 6648 -6 4 730 689 256 79 113 chr9 19048501 19048856 -105027316 + MT2B LTR ERVL 99 601 0 4 730 990 295 39 6 chr9 19048858 19049219 -105026953 + Lx7 LINE L1 5998 6370 -1326 4 730 1112 251 19 11 chr9 19049233 19049495 -105026677 + Lx5 LINE L1 6730 6993 -57 4 730 2834 288 97 24 chr9 19049906 19051077 -105025095 + Lx9 LINE L1 6323 7579 -65 5 730 25 51 0 0 chr9 19051077 19051116 -105025056 + AT_rich Low_complexity Low_complexity 1 39 0 5 730 21 71 0 0 chr9 19052170 19052212 -105023960 + AT_rich Low_complexity Low_complexity 1 42 0 5 730 734 124 0 8 chr9 19052660 19052782 -105023390 + (GGAA)n Simple_repeat Simple_repeat 2 122 0 5 730 723 272 32 59 chr9 19054536 19054755 -105021417 - ORR1D2 LTR MaLR -3 367 155 5 730 348 24 0 0 chr9 19055783 19055824 -105020348 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 730 267 104 0 0 chr9 19056978 19057026 -105019146 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 730 2788 99 9 26 chr9 19057065 19057490 -105018682 - Lx3B LINE L1 0 6654 6237 5 730 25 31 0 0 chr9 19057616 19057648 -105018524 + AT_rich Low_complexity Low_complexity 1 32 0 5 730 7880 157 16 14 chr9 19057759 19059488 -105016684 - Lx3A LINE L1 -6 6975 5236 5 730 2077 35 15 4 chr9 19059488 19059750 -105016422 - L1Md_F3 LINE L1 0 6584 6320 6 730 4427 146 5 24 chr9 19059750 19059850 -105016322 - Lx3A LINE L1 -651 5235 5136 5 730 13732 125 36 17 chr9 19059855 19061778 -105014394 + L1_Mur1 LINE L1 2365 4315 -1571 6 730 731 11 11 0 chr9 19061778 19061866 -105014306 + (GA)n Simple_repeat Simple_repeat 2 90 0 6 730 13732 125 36 17 chr9 19061866 19062337 -105013835 + L1_Mur1 LINE L1 4316 4804 -1082 6 730 4793 171 42 19 chr9 19062356 19063302 -105012870 - Lx3B LINE L1 -4 6969 6002 6 730 15519 159 45 16 chr9 19063268 19066160 -105010012 - Lx3B LINE L1 -796 6177 3161 5 730 1002 91 0 0 chr9 19066160 19066303 -105009869 + (TTTTC)n Simple_repeat Simple_repeat 3 145 0 6 730 15519 161 44 19 chr9 19066303 19066838 -105009334 - Lx3B LINE L1 -2726 3160 2649 5 730 5900 129 11 32 chr9 19066821 19067719 -105008453 + Lx3_Mus LINE L1 2648 3527 -2359 6 730 3261 46 5 0 chr9 19067719 19068113 -105008059 + MTA_Mm LTR MaLR 1 396 0 6 730 8526 62 7 1 chr9 19068113 19069203 -105006969 + MTA_Mm-int LTR MaLR 1 1097 -1 6 730 3233 43 8 0 chr9 19069204 19069597 -105006575 + MTA_Mm LTR MaLR 1 396 0 6 730 5900 129 11 32 chr9 19069597 19069739 -105006433 + Lx3_Mus LINE L1 3528 3668 -2218 6 730 6717 126 14 5 chr9 19069744 19071465 -105004707 + Lx3_Mus LINE L1 4829 6568 -441 6 730 21416 46 1 0 chr9 19071467 19074141 -105002031 + L1Md_F3 LINE L1 2909 5586 -297 6 730 7958 47 4 0 chr9 19074141 19075121 -105001051 + L1Md_F3 LINE L1 5587 6570 -14 6 730 23 0 0 0 chr9 19075147 19075170 -105001002 + AT_rich Low_complexity Low_complexity 1 23 0 6 730 536 101 11 0 chr9 19075215 19075304 -105000868 + (GAAAA)n Simple_repeat Simple_repeat 2 91 0 6 730 8093 180 25 11 chr9 19075304 19076666 -104999506 + L1_Mur2 LINE L1 3478 4851 -1026 7 730 850 71 24 0 chr9 19076666 19076792 -104999380 + (GAAA)n Simple_repeat Simple_repeat 3 131 0 7 730 8093 180 25 11 chr9 19076792 19077130 -104999042 + L1_Mur2 LINE L1 4852 5201 -676 7 730 6458 192 43 11 chr9 19077127 19077920 -104998252 - Lx4A LINE L1 -109 6949 6119 7 730 2711 81 37 34 chr9 19077920 19078330 -104997842 + RLTR9F LTR ERVK 1 411 -4 7 730 6458 169 50 2 chr9 19078330 19079445 -104996727 - Lx4A LINE L1 -940 6118 4950 7 730 13436 163 45 36 chr9 19079438 19080471 -104995701 - Lx4A LINE L1 -1799 4078 3037 7 730 1825 168 3 3 chr9 19080471 19080793 -104995379 + ORR1A3 LTR MaLR 1 322 -4 7 730 13436 176 44 23 chr9 19080793 19083787 -104992385 - Lx4A LINE L1 -2841 3036 375 7 730 369 0 0 0 chr9 19083842 19083883 -104992289 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 730 209 180 0 20 chr9 19083954 19083981 -104992191 + polypyrimidine Low_complexity Low_complexity 25 51 0 7 730 1002 128 0 22 chr9 19083981 19084165 -104992007 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 730 209 180 0 20 chr9 19084165 19084188 -104991984 + polypyrimidine Low_complexity Low_complexity 2 24 0 7 730 394 290 0 65 chr9 19084190 19084345 -104991827 - B1_Mm SINE Alu 0 147 3 7 730 1050 47 13 13 chr9 19084500 19084650 -104991522 + (TATATG)n Simple_repeat Simple_repeat 1 150 0 8 730 189 220 28 0 chr9 19084652 19084761 -104991411 + (TA)n Simple_repeat Simple_repeat 1 112 0 8 730 23 68 0 0 chr9 19084766 19084810 -104991362 + AT_rich Low_complexity Low_complexity 1 44 0 8 730 226 347 54 13 chr9 19084810 19084959 -104991213 - RMER12 LTR ERVK -467 855 701 8 730 244 348 66 26 chr9 19084959 19085186 -104990986 - L1_Mur3 LINE L1 -6608 1104 869 8 730 29 0 0 0 chr9 19085372 19085401 -104990771 + AT_rich Low_complexity Low_complexity 1 29 0 8 730 1019 292 153 56 chr9 19085517 19085886 -104990286 - Lx5 LINE L1 -12 7038 6663 8 730 492 48 0 0 chr9 19085886 19085949 -104990223 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 730 1019 292 153 56 chr9 19085949 19086116 -104990056 - Lx5 LINE L1 -388 6662 6450 8 730 2667 250 84 8 chr9 19086146 19086402 -104989770 - Lx5 LINE L1 -658 6392 6111 8 730 464 0 18 0 chr9 19086402 19086458 -104989714 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 730 2667 245 73 14 chr9 19086458 19087332 -104988840 - Lx5 LINE L1 -940 6110 5185 8 730 8284 178 135 6 chr9 19087360 19088135 -104988037 - L1Md_F LINE L1 -2397 3486 2551 8 730 507 134 0 0 chr9 19088135 19088217 -104987955 + (CTG)n Simple_repeat Simple_repeat 2 83 0 9 730 8284 185 101 41 chr9 19088217 19090299 -104985873 - L1Md_F LINE L1 -3333 2550 387 8 730 7889 174 14 25 chr9 19090309 19092250 -104983922 - Lx2 LINE L1 -2 6995 5053 9 730 265 24 0 45 chr9 19092552 19092596 -104983576 + (TTA)n Simple_repeat Simple_repeat 1 42 0 9 730 1143 69 0 0 chr9 19092597 19092741 -104983431 - B1_Mm SINE Alu -1 146 3 9 730 35285 47 0 3 chr9 19092894 19098251 -104977921 + L1Md_T LINE L1 153 5589 -297 9 730 8452 32 0 0 chr9 19098251 19099247 -104976925 + L1Md_T LINE L1 5590 6585 0 9 730 3034 71 2 5 chr9 19099643 19100040 -104976132 + MTA_Mm LTR MaLR 1 396 0 9 730 4207 149 56 9 chr9 19100067 19100706 -104975466 - L1_Mur1 LINE L1 -541 5345 4666 9 730 255 31 0 0 chr9 19100706 19100738 -104975434 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 730 4207 149 56 9 chr9 19100738 19100915 -104975257 - L1_Mur1 LINE L1 -1221 4665 4490 9 730 2618 168 79 21 chr9 19100916 19101536 -104974636 - L1_Mur1 LINE L1 -2688 3198 2543 9 730 1805 280 55 42 chr9 19101544 19102409 -104973763 - L1_Rod LINE L1 -1447 4400 3524 9 730 560 243 22 22 chr9 19102812 19102951 -104973221 + B1_Mur3 SINE Alu 1 139 -10 9 730 261 0 0 0 chr9 19102951 19102980 -104973192 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 730 23 54 0 0 chr9 19103622 19103659 -104972513 + AT_rich Low_complexity Low_complexity 1 37 0 1 730 1076 78 5 103 chr9 19104004 19104020 -104972152 + Lx3_Mus LINE L1 6818 6833 -176 1 730 1524 148 62 159 chr9 19104020 19104455 -104971717 + RLTR9C LTR ERVK 1 393 0 1 730 1076 78 5 103 chr9 19104455 19104651 -104971521 + Lx3_Mus LINE L1 6834 7009 0 1 730 201 94 0 0 chr9 19105056 19105088 -104971084 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 730 3451 76 0 0 chr9 19105620 19106066 -104970106 - L1_Mus1 LINE L1 -1 6566 6121 1 730 4482 60 3 0 chr9 19106066 19106633 -104969539 + L1_Mus1 LINE L1 5618 6186 -381 1 730 2024 141 56 56 chr9 19106756 19107060 -104969112 + RMER17D2 LTR ERVK 1 318 -491 1 730 903 19 0 0 chr9 19107060 19107165 -104969007 + (TCTCC)n Simple_repeat Simple_repeat 2 106 0 1 730 2024 141 56 56 chr9 19107165 19107304 -104968868 + RMER17D2 LTR ERVK 319 444 -365 1 730 1528 212 43 68 chr9 19107681 19108212 -104967960 + L1_Mur3 LINE L1 3008 3525 -2355 1 730 322 303 93 31 chr9 19108440 19108634 -104967538 - RLTR15 LTR ERVK -76 283 78 1 730 243 0 0 0 chr9 19108646 19108673 -104967499 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 730 207 69 0 0 chr9 19108672 19108701 -104967471 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 730 1632 276 11 23 chr9 19108812 19109487 -104966685 - Lx7 LINE L1 -1318 6142 5449 1 730 701 199 0 6 chr9 19109514 19109671 -104966501 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 730 358 185 0 0 chr9 19109673 19109754 -104966418 - Lx LINE L1 -12 6642 6562 1 730 3279 104 4 24 chr9 19109754 19110255 -104965917 - Lx LINE L1 -565 6089 5599 1 730 1801 172 3 0 chr9 19110251 19110576 -104965596 - L1_Mur1 LINE L1 -2045 3841 3516 1 730 9709 106 64 45 chr9 19110579 19112344 -104963828 - MusHAL1 LINE L1 -845 1867 70 1 730 1709 258 17 65 chr9 19112475 19113011 -104963161 - RLTR18B LTR ERVK 0 512 3 1 730 585 355 84 13 chr9 19113085 19113396 -104962776 - Lx8 LINE L1 -6 7467 7135 1 730 30 0 0 0 chr9 19113576 19113606 -104962566 + AT_rich Low_complexity Low_complexity 1 30 0 1 730 2544 107 47 3 chr9 19113773 19114156 -104962016 + MTB LTR MaLR 1 400 0 1 730 6395 110 24 79 chr9 19114156 19115318 -104960854 + MTB-int LTR MaLR 1 1098 0 1 730 2696 113 5 5 chr9 19115318 19115718 -104960454 + MTB LTR MaLR 1 400 0 1 730 379 310 42 37 chr9 19116065 19116371 -104959801 - Lx7 LINE L1 -344 5956 5614 1 730 2541 163 148 5 chr9 19116371 19116933 -104959239 + RLTR26 LTR ERVK 1 642 0 1 730 413 371 38 30 chr9 19116940 19117204 -104958968 + ORR1D1 LTR MaLR 107 372 -2 1 730 23 78 0 0 chr9 19117251 19117302 -104958870 + AT_rich Low_complexity Low_complexity 1 51 0 1 730 1051 127 23 0 chr9 19117784 19117957 -104958215 - Lx2 LINE L1 -1086 5911 5735 1 730 5161 135 20 11 chr9 19117963 19118821 -104957351 - Lx3_Mus LINE L1 -10 6999 6134 1 730 1359 136 32 36 chr9 19118821 19119072 -104957100 + Lx3_Mus LINE L1 5871 6120 -889 1 730 1492 168 4 0 chr9 19119070 19119320 -104956852 - Lx2 LINE L1 -131 5752 5502 1 730 2980 145 45 43 chr9 19119320 19119895 -104956277 + Lx2 LINE L1 6418 6993 -4 1 730 29 28 0 0 chr9 19120188 19120224 -104955948 + AT_rich Low_complexity Low_complexity 1 36 0 1 730 23 78 0 0 chr9 19121339 19121390 -104954782 + AT_rich Low_complexity Low_complexity 1 51 0 1 730 225 293 33 41 chr9 19124329 19124450 -104951722 + RLTR15 LTR ERVK 174 293 -66 1 730 30 0 0 0 chr9 19124684 19124714 -104951458 + AT_rich Low_complexity Low_complexity 1 30 0 1 730 37520 50 2 7 chr9 19124762 19130957 -104945215 - L1Md_F2 LINE L1 -2 6580 422 1 730 720 99 0 0 chr9 19131380 19131491 -104944681 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 1 730 858 341 27 9 chr9 19131510 19131841 -104944331 - Lx6 LINE L1 -210 7250 6914 1 730 3802 222 42 158 chr9 19131843 19131892 -104944280 - L1_Mur3 LINE L1 -2362 3518 3478 1 730 180 77 0 0 chr9 19131892 19131918 -104944254 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 730 3802 222 42 158 chr9 19131918 19133839 -104942333 - L1_Mur3 LINE L1 -2403 3477 1776 1 730 420 71 0 0 chr9 19134782 19134838 -104941334 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 730 448 336 97 33 chr9 19134951 19135373 -104940799 - L1M2 LINE L1 -3174 2969 2521 1 730 23 33 0 0 chr9 19135584 19135614 -104940558 + AT_rich Low_complexity Low_complexity 1 30 0 1 730 21 0 0 0 chr9 19135749 19135770 -104940402 + AT_rich Low_complexity Low_complexity 1 21 0 1 730 398 20 20 0 chr9 19136140 19136191 -104939981 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1 730 537 257 0 22 chr9 19136192 19136331 -104939841 - B1_Mur3 SINE Alu -13 136 1 1 731 26 0 0 0 chr9 19136702 19136728 -104939444 + AT_rich Low_complexity Low_complexity 1 26 0 1 731 21 0 0 31 chr9 19136778 19136794 -104939378 + AT_rich Low_complexity Low_complexity 1 16 0 1 731 808 161 14 0 chr9 19136794 19136937 -104939235 + B1_Mus1 SINE Alu 1 145 -3 1 731 21 0 0 31 chr9 19136937 19136952 -104939220 + AT_rich Low_complexity Low_complexity 1 15 0 1 731 1986 271 59 29 chr9 19136967 19137317 -104938855 + L1_Rod LINE L1 3620 3970 -1877 1 731 471 35 0 0 chr9 19137317 19137374 -104938798 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 731 1986 271 59 29 chr9 19137374 19137784 -104938388 + L1_Rod LINE L1 3971 4402 -1445 1 731 3200 177 19 6 chr9 19137785 19138426 -104937746 + L1_Mur1 LINE L1 2543 3191 -2695 1 731 3052 172 10 29 chr9 19138434 19139055 -104937117 + L1_Mur1 LINE L1 4490 5098 -788 1 731 4015 257 34 19 chr9 19139042 19140153 -104936019 - L1_Mur3 LINE L1 -6546 1166 39 1 731 28 48 0 0 chr9 19140513 19140555 -104935617 + AT_rich Low_complexity Low_complexity 1 42 0 1 731 25 51 0 0 chr9 19141816 19141855 -104934317 + AT_rich Low_complexity Low_complexity 1 39 0 1 731 201 162 0 0 chr9 19141902 19141939 -104934233 + (TATG)n Simple_repeat Simple_repeat 4 40 0 1 731 348 372 61 0 chr9 19141943 19142091 -104934081 - RSINE1 SINE B4 -5 160 4 1 731 31 26 0 0 chr9 19142444 19142482 -104933690 + AT_rich Low_complexity Low_complexity 1 38 0 1 731 26 50 0 0 chr9 19142806 19142846 -104933326 + AT_rich Low_complexity Low_complexity 1 40 0 1 731 290 26 26 0 chr9 19143970 19144009 -104932163 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 1 731 28 48 0 0 chr9 19144592 19144634 -104931538 + AT_rich Low_complexity Low_complexity 1 42 0 1 731 202 180 78 11 chr9 19144950 19145040 -104931132 + (TAA)n Simple_repeat Simple_repeat 1 96 0 1 731 324 0 0 0 chr9 19145076 19145112 -104931060 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 731 278 87 22 0 chr9 19145239 19145285 -104930887 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 731 655 304 52 17 chr9 19145285 19145516 -104930656 - RMER15 LTR ERVL -43 532 294 1 731 2441 76 11 63 chr9 19145848 19146228 -104929944 + L1_Mus2 LINE L1 6207 6566 0 1 731 243 183 27 40 chr9 19146875 19146949 -104929223 + A-rich Low_complexity Low_complexity 2 74 0 1 731 546 43 0 0 chr9 19146983 19147052 -104929120 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 731 420 293 128 44 chr9 19147537 19147787 -104928385 - Lx8 LINE L1 0 7473 7203 1 731 1008 296 87 28 chr9 19147997 19148355 -104927817 + MTD LTR MaLR 8 386 -33 1 731 225 377 19 43 chr9 19148930 19149091 -104927081 + MTD LTR MaLR 5 161 -258 1 731 11195 54 5 2 chr9 19150375 19152522 -104923650 - L1Md_F3 LINE L1 0 6584 4430 1 731 7958 61 3 0 chr9 19152499 19153533 -104922639 - L1Md_F3 LINE L1 -392 5491 4455 1 731 28394 75 37 34 chr9 19153535 19154098 -104922074 - L1_Mm LINE L1 -392 5491 4909 1 731 230 271 35 85 chr9 19154098 19154239 -104921933 + MER72B LTR ERV1 280 413 -355 1 731 28394 75 37 34 chr9 19154239 19157814 -104918358 - L1_Mm LINE L1 -392 4908 1203 1 731 6538 102 7 19 chr9 19157780 19158747 -104917425 - L1Md_F LINE L1 -5380 1139 184 1 731 2947 172 21 4 chr9 19158748 19159309 -104916863 - L1Md_A LINE L1 -5731 993 423 1 731 210 215 0 81 chr9 19159591 19159618 -104916554 + T-rich Low_complexity Low_complexity 56 80 0 1 731 354 108 0 0 chr9 19159618 19159683 -104916489 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 1 731 210 215 0 81 chr9 19159683 19159741 -104916431 + T-rich Low_complexity Low_complexity 2 55 0 1 731 1769 71 0 0 chr9 19159745 19159971 -104916201 - L1_Mus1 LINE L1 -1 6566 6341 1 731 2126 67 0 0 chr9 19159971 19160240 -104915932 + L1_Mus1 LINE L1 6075 6343 -223 1 731 1113 68 0 26 chr9 19160411 19160548 -104915624 + B1_Mus1 SINE Alu 2 138 -10 1 731 370 0 20 20 chr9 19160548 19160599 -104915573 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 731 1113 68 0 26 chr9 19160599 19160612 -104915560 + B1_Mus1 SINE Alu 139 148 0 1 731 183 80 0 0 chr9 19160613 19160638 -104915534 + (A)n Simple_repeat Simple_repeat 1 25 0 1 731 34 24 0 0 chr9 19161420 19161461 -104914711 + AT_rich Low_complexity Low_complexity 1 41 0 1 731 435 345 23 6 chr9 19161573 19161748 -104914424 + B3A SINE B2 5 182 -16 1 731 804 91 8 15 chr9 19161770 19161904 -104914268 + (GA)n Simple_repeat Simple_repeat 1 133 0 1 731 1372 149 59 24 chr9 19161937 19162192 -104913980 - Lx2 LINE L1 0 6997 6734 1 731 969 172 0 0 chr9 19162409 19162578 -104913594 - Lx3B LINE L1 -710 5176 5008 1 731 7457 153 41 7 chr9 19162578 19164323 -104911849 + Lx3B LINE L1 5168 6969 -4 1 731 33 0 0 0 chr9 19164332 19164365 -104911807 + AT_rich Low_complexity Low_complexity 1 33 0 1 731 324 65 15 61 chr9 19166939 19167005 -104909167 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 1 731 401 278 24 51 chr9 19167132 19167358 -104908814 - L1M2 LINE L1 -573 5718 5494 1 731 828 303 120 10 chr9 19168704 19169121 -104907051 - Lx9 LINE L1 -5 7639 7177 1 731 333 335 54 51 chr9 19169963 19170250 -104905922 + MTC LTR MaLR 93 419 0 1 731 22 56 0 0 chr9 19170569 19170605 -104905567 + AT_rich Low_complexity Low_complexity 1 36 0 1 731 213 65 0 0 chr9 19170681 19170712 -104905460 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 1 731 378 0 0 0 chr9 19171303 19171345 -104904827 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 731 664 352 37 59 chr9 19171615 19172023 -104904149 + MTD LTR MaLR 1 399 -20 1 731 567 0 0 0 chr9 19172041 19172104 -104904068 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 731 12159 123 56 1 chr9 19173002 19175742 -104900430 - L1_Mus2 LINE L1 -2 6564 3652 1 731 3913 186 57 29 chr9 19175742 19176610 -104899562 + RLTR25A LTR ERVK 212 1103 0 1 731 235 311 140 35 chr9 19176726 19176926 -104899246 - Lx8 LINE L1 -15 7458 7238 1 731 1740 39 0 0 chr9 19176947 19177152 -104899020 - L1Md_F2 LINE L1 -431 6151 5947 1 731 3362 46 2 0 chr9 19177152 19177566 -104898606 + L1Md_F2 LINE L1 6168 6582 0 1 731 450 0 0 0 chr9 19178588 19178638 -104897534 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 731 1198 82 6 0 chr9 19178638 19178796 -104897376 - B2_Mm1a SINE B2 -33 160 2 2 731 270 56 0 0 chr9 19180497 19180533 -104895639 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2 731 755 150 6 0 chr9 19181327 19181500 -104894672 + GA-rich Low_complexity Low_complexity 1 174 0 2 731 258 188 49 12 chr9 19181588 19181669 -104894503 - L1M2 LINE L1 -470 5842 5759 2 731 24 0 0 0 chr9 19182691 19182715 -104893457 + AT_rich Low_complexity Low_complexity 1 24 0 2 731 31 58 0 0 chr9 19182782 19182834 -104893338 + AT_rich Low_complexity Low_complexity 1 52 0 2 731 846 252 43 20 chr9 19183301 19183604 -104892568 - Lx9 LINE L1 -1 7643 7334 2 731 11426 83 25 13 chr9 19183628 19185803 -104890369 - L1_Mus3 LINE L1 0 6638 4428 2 731 38730 34 2 7 chr9 19185836 19192071 -104884101 - L1Md_T LINE L1 0 6582 384 2 731 9432 97 15 39 chr9 19192054 19192725 -104883447 - L1Md_T LINE L1 -620 6018 5358 2 731 315 0 0 0 chr9 19192725 19192760 -104883412 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 731 9432 144 21 31 chr9 19192760 19193121 -104883051 - L1Md_T LINE L1 -526 5357 4998 2 731 1512 62 0 0 chr9 19193121 19193313 -104882859 + B2_Mm1a SINE B2 1 192 -1 2 731 9432 144 21 31 chr9 19193313 19194148 -104882024 - L1Md_T LINE L1 -886 4997 4180 2 731 2041 114 6 3 chr9 19194148 19194465 -104881707 - L1_Mus3 LINE L1 -1 6637 6320 2 731 680 257 13 0 chr9 19194465 19194617 -104881555 - Lx9 LINE L1 -312 7332 7179 2 731 414 297 36 66 chr9 19194877 19195014 -104881158 - RSINE1 SINE B4 0 165 33 2 731 24 0 0 0 chr9 19195073 19195097 -104881075 + AT_rich Low_complexity Low_complexity 1 24 0 2 731 2079 237 139 0 chr9 19195097 19195637 -104880535 - Lx5 LINE L1 0 7050 6436 2 731 471 166 22 52 chr9 19195610 19195719 -104880453 - L1_Mur2 LINE L1 -1106 4774 4668 2 731 599 245 38 0 chr9 19195717 19195876 -104880296 + L1_Mur2 LINE L1 4994 5158 -719 2 731 9881 182 42 43 chr9 19195878 19196854 -104879318 - L1_Mur2 LINE L1 -1199 4678 3721 2 731 5213 70 3 4 chr9 19196854 19197539 -104878633 - L1_Mus1 LINE L1 0 6567 5884 2 731 9881 182 42 43 chr9 19197539 19197821 -104878351 - L1_Mur2 LINE L1 -2157 3720 3416 2 731 287 0 53 0 chr9 19197821 19197859 -104878313 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 731 9881 182 42 43 chr9 19197859 19198344 -104877828 - L1_Mur2 LINE L1 -2462 3415 2940 2 731 4274 163 111 57 chr9 19198344 19199314 -104876858 + RLTR13D2 LTR ERVK 1 1023 0 2 731 9881 182 42 43 chr9 19199314 19199878 -104876294 - L1_Mur2 LINE L1 -2938 2939 2371 2 731 230 386 73 44 chr9 19200057 19200263 -104875909 - Lx8 LINE L1 -150 7323 7112 2 731 276 30 0 0 chr9 19200285 19200318 -104875854 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 731 5021 145 38 7 chr9 19200458 19201311 -104874861 - Lx2 LINE L1 -1 6996 6118 2 731 1556 144 8 4 chr9 19201308 19201572 -104874600 + Lx2 LINE L1 6733 6997 0 2 731 912 239 13 64 chr9 19201600 19201974 -104874198 + Lx6 LINE L1 6965 7572 -124 2 731 369 239 145 32 chr9 19201981 19202167 -104874005 + Lx7 LINE L1 7482 7688 -8 2 731 497 58 14 0 chr9 19202273 19202342 -104873830 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 731 360 235 49 0 chr9 19202531 19202612 -104873560 + ORR1A2 LTR MaLR 36 120 -274 2 731 1127 175 16 90 chr9 19202722 19202967 -104873205 + ORR1A2 LTR MaLR 92 318 -9 2 731 1015 106 11 24 chr9 19202976 19203153 -104873019 + ORR1A1 LTR MaLR 1 162 -164 2 731 2135 255 44 22 chr9 19203155 19203604 -104872568 + RLTR20B1 LTR ERVK 3 455 -108 2 731 985 71 0 23 chr9 19203604 19203823 -104872349 + (TG)n Simple_repeat Simple_repeat 1 213 0 2 731 2135 255 44 22 chr9 19203823 19203915 -104872257 + RLTR20B1 LTR ERVK 456 556 -7 2 731 869 184 1 3 chr9 19203920 19204095 -104872077 - L1_Mur2 LINE L1 -427 5450 5279 2 731 575 316 115 26 chr9 19204094 19204592 -104871580 - Lx6 LINE L1 -33 7427 6507 2 731 290 217 0 0 chr9 19204785 19204845 -104871327 - L1_Mur2 LINE L1 -701 5176 5117 2 731 359 139 118 13 chr9 19204849 19205002 -104871170 + T-rich Low_complexity Low_complexity 4 172 0 2 731 384 254 0 0 chr9 19205030 19205567 -104870605 + (CTTTG)n Simple_repeat Simple_repeat 1 537 0 2 731 834 164 0 0 chr9 19205558 19205723 -104870449 + T-rich Low_complexity Low_complexity 3 167 0 2 731 6628 223 55 12 chr9 19205754 19207871 -104868301 - L1_Mur2 LINE L1 -753 5127 2186 2 731 1017 263 64 91 chr9 19209684 19210203 -104865969 + RLTR16 LTR ERVK 1 505 0 2 731 192 40 0 0 chr9 19210261 19210286 -104865886 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 731 874 229 18 54 chr9 19210784 19211061 -104865111 + RMER3D-int LTR ERVK 1112 1378 -1464 2 731 779 184 0 23 chr9 19211073 19211245 -104864927 + MYSERV16_I-int LTR ERVK 280 447 -1879 2 731 3224 143 62 8 chr9 19211234 19211882 -104864290 + MYSERV16_I-int LTR ERVK 1115 1797 -529 2 731 376 205 24 0 chr9 19211898 19211981 -104864191 + RLTR20D LTR ERVK 271 355 -213 2 731 2237 173 44 26 chr9 19211981 19212485 -104863687 + MYSERV16_I-int LTR ERVK 1806 2318 -8 2 731 1081 274 53 63 chr9 19212493 19212904 -104863268 + RLTR16 LTR ERVK 1 397 -108 2 731 288 0 0 0 chr9 19212904 19212936 -104863236 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 731 522 0 0 0 chr9 19212936 19212993 -104863179 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 731 1081 274 53 63 chr9 19212993 19213090 -104863082 + RLTR16 LTR ERVK 398 504 -1 2 731 2719 266 25 25 chr9 19214114 19214877 -104861295 + Lx7 LINE L1 6629 7391 -305 2 731 398 36 18 0 chr9 19214911 19214967 -104861205 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 731 909 259 49 4 chr9 19215074 19215299 -104860873 - Lx4B LINE L1 0 7058 6824 2 731 270 0 0 0 chr9 19215300 19215330 -104860842 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 731 1927 252 30 4 chr9 19215338 19215840 -104860332 - Lx9 LINE L1 -190 7454 6940 2 731 577 238 156 16 chr9 19215842 19216086 -104860086 + L1_Mur3 LINE L1 5346 5623 -257 2 731 1876 266 40 30 chr9 19216087 19216587 -104859585 - RMER19C LTR ERVK 0 611 107 2 731 329 198 0 207 chr9 19216734 19216874 -104859298 + MTE2a LTR MaLR 1 111 -268 2 731 518 272 84 24 chr9 19216894 19217060 -104859112 + MTE2a LTR MaLR 204 379 0 2 731 412 345 111 45 chr9 19217496 19218011 -104858161 - Lx7 LINE L1 -378 7318 6770 2 731 786 277 31 9 chr9 19218103 19218325 -104857847 - Lx7 LINE L1 -919 6777 6551 2 731 1497 182 171 60 chr9 19218328 19218743 -104857429 + RMER6B LTR ERVK 1 461 0 2 731 422 345 67 4 chr9 19218743 19218996 -104857176 - Lx6 LINE L1 -918 6542 6274 2 731 384 158 146 0 chr9 19219039 19219121 -104857051 + ORR1B1 LTR MaLR 236 329 -65 2 731 222 118 0 0 chr9 19219128 19219162 -104857010 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 2 731 326 164 0 16 chr9 19219199 19219261 -104856911 + ORR1A4 LTR MaLR 261 321 -8 2 731 6510 207 62 94 chr9 19219264 19221074 -104855098 + ORR1A4-int LTR MaLR 1 1752 -211 2 731 915 241 44 5 chr9 19221062 19221266 -104854906 - MTC LTR MaLR -209 212 1 2 731 340 294 0 0 chr9 19221266 19221358 -104854814 - Lx6 LINE L1 -279 5601 5510 2 731 632 282 24 36 chr9 19221423 19221673 -104854499 - Lx9 LINE L1 -1636 6008 5762 2 731 323 226 0 0 chr9 19221673 19221735 -104854437 + ORR1B1 LTR MaLR 3 64 -330 2 731 2429 267 37 34 chr9 19221741 19222638 -104853534 - Lx9 LINE L1 -433 5414 4506 2 731 1374 268 35 7 chr9 19222638 19223044 -104853128 + MTC LTR MaLR 1 417 -4 2 731 2429 267 37 34 chr9 19223044 19223119 -104853053 - Lx9 LINE L1 -1342 4505 4439 2 731 1527 265 52 39 chr9 19223132 19223591 -104852581 + RMER13B LTR ERVK 413 877 -31 2 731 486 116 0 65 chr9 19223861 19223953 -104852219 + Lx3_Mus LINE L1 2895 2980 -2906 2 731 13641 122 18 19 chr9 19223923 19227258 -104848914 + Lx3_Mus LINE L1 3695 7009 0 2 731 13288 180 20 58 chr9 19227265 19230143 -104846029 + Lx4A LINE L1 2916 5682 -204 2 731 580 84 383 0 chr9 19230143 19230250 -104845922 - B1_Mus1 SINE Alu 0 148 1 2 731 13288 176 76 84 chr9 19230250 19230746 -104845426 + Lx4A LINE L1 5680 6211 -847 2 731 2512 97 38 58 chr9 19230748 19231175 -104844997 - BGLII LTR ERVK 0 421 4 2 731 3327 196 38 43 chr9 19231176 19232056 -104844116 - RMER3D-int LTR ERVK -1 2841 1967 2 731 2779 160 92 71 chr9 19232080 19232732 -104843440 - RMER3D-int LTR ERVK -1163 1679 1014 2 731 269 69 93 56 chr9 19232776 19232884 -104843288 + CT-rich Low_complexity Low_complexity 4 115 0 2 731 664 156 9 59 chr9 19232884 19232976 -104843196 - RMER3D-int LTR ERVK -2278 564 521 2 731 2423 93 92 8 chr9 19232976 19233355 -104842817 - IAPLTR2a LTR ERVK 0 411 1 2 731 664 185 81 45 chr9 19233355 19233607 -104842565 - RMER3D-int LTR ERVK -2005 837 354 2 731 331 193 68 18 chr9 19233625 19233794 -104842378 - RMER3D-int LTR ERVK -2365 477 402 2 731 32778 77 28 4 chr9 19233794 19238954 -104837218 + L1Md_F2 LINE L1 296 5586 -297 2 731 7984 57 0 0 chr9 19238954 19239940 -104836232 + L1Md_F2 LINE L1 5587 6572 -10 2 731 432 257 0 51 chr9 19239941 19240097 -104836075 - RMER3D-int LTR ERVK -2036 806 659 2 731 501 141 0 10 chr9 19240114 19240211 -104835961 - RMER3D-int LTR ERVK -2278 564 486 2 731 2253 102 134 5 chr9 19240613 19240986 -104835186 - BGLII LTR ERVK 0 421 1 2 731 2752 184 38 0 chr9 19240986 19241487 -104834685 + Lx4A LINE L1 6208 6727 -331 2 731 2716 207 78 5 chr9 19241507 19242081 -104834091 + Lx3C LINE L1 6358 6973 -3 2 731 1037 263 121 56 chr9 19242593 19242915 -104833257 + RMER1B Other Other 44 386 -680 2 731 2080 276 90 78 chr9 19243005 19244374 -104831798 + RMER1B Other Other 1 1063 -3 2 731 29 0 0 0 chr9 19246655 19246684 -104829488 + AT_rich Low_complexity Low_complexity 1 29 0 2 731 742 222 30 0 chr9 19246690 19246857 -104829315 - Lx9 LINE L1 -671 6973 6802 2 731 227 221 43 29 chr9 19248721 19248791 -104827381 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 2 731 441 0 0 0 chr9 19252212 19252261 -104823911 + (TAA)n Simple_repeat Simple_repeat 3 51 0 2 731 32843 86 5 4 chr9 19252563 19257704 -104818468 + L1Md_F2 LINE L1 446 5585 -298 2 731 7240 65 34 11 chr9 19257705 19258677 -104817495 + L1Md_F2 LINE L1 5587 6580 -2 2 731 212 122 24 0 chr9 19259081 19259122 -104817050 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 731 260 102 20 0 chr9 19259123 19259172 -104817000 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2 731 235 241 36 12 chr9 19259541 19259625 -104816547 + (CATATA)n Simple_repeat Simple_repeat 2 87 0 2 731 232 289 13 0 chr9 19260119 19260195 -104815977 + GA-rich Low_complexity Low_complexity 1 77 0 2 731 435 270 89 35 chr9 19260302 19260505 -104815667 - RMER17C-int LTR ERVK 0 3238 3025 2 731 275 331 29 29 chr9 19260810 19260947 -104815225 + RLTR23 LTR ERV1 1 137 -293 2 731 658 197 42 84 chr9 19260957 19261123 -104815049 + RLTR23 LTR ERV1 107 265 -165 2 731 313 183 319 11 chr9 19261125 19261219 -104814953 + RLTR23 LTR ERV1 182 304 -126 2 731 632 241 59 99 chr9 19261262 19261534 -104814638 - RLTR19-int LTR ERVK -2343 3794 3534 2 731 1138 69 0 0 chr9 19261536 19261681 -104814491 + B1_Mus1 SINE Alu 1 145 -3 2 731 456 19 0 0 chr9 19261684 19261737 -104814435 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 2 731 344 77 19 0 chr9 19261832 19261884 -104814288 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 731 432 0 0 0 chr9 19261884 19261932 -104814240 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 731 1940 256 126 15 chr9 19262106 19262653 -104813519 - RMER13A LTR ERVK -252 608 1 2 731 315 0 0 0 chr9 19262798 19262833 -104813339 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 2 731 843 291 23 37 chr9 19262899 19263199 -104812973 - RodERV21-int LTR ERV1 -4689 302 7 2 731 1110 244 57 7 chr9 19263424 19263705 -104812467 - Lx5 LINE L1 0 7050 6756 2 731 1627 173 6 60 chr9 19263975 19264326 -104811846 + RLTR9D LTR ERVK 71 402 -1 2 731 543 131 14 164 chr9 19264707 19264853 -104811319 - Lx3_Mus LINE L1 -894 6115 5992 2 731 180 111 0 0 chr9 19265431 19265458 -104810714 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 2 731 291 130 93 0 chr9 19265812 19265866 -104810306 + RMER6B LTR ERVK 3 61 -400 3 731 407 241 65 71 chr9 19265885 19265991 -104810181 - RMER6B LTR ERVK -252 209 110 3 731 1260 112 16 0 chr9 19265991 19266178 -104809994 + B2_Mm2 SINE B2 1 190 -5 3 731 407 241 65 71 chr9 19266178 19266241 -104809931 - RMER6B LTR ERVK -352 109 41 3 731 422 208 108 10 chr9 19266226 19266328 -104809844 - RMER6B LTR ERVK -332 129 18 3 731 1418 179 119 35 chr9 19266566 19266762 -104809410 - Lx4A LINE L1 -16 7042 6819 3 731 195 69 0 0 chr9 19266762 19266791 -104809381 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 731 1418 179 119 35 chr9 19266791 19266912 -104809260 - Lx4A LINE L1 -240 6818 6698 3 731 3345 119 63 22 chr9 19266910 19267512 -104808660 + L1_Mur1 LINE L1 1851 2477 -3409 3 91 616 192 89 42 chr9 19267517 19267685 -104808487 - RLTR10B LTR ERVK 0 292 117 3 732 2013 49 0 0 chr9 19267693 19267937 -104808235 - RLTR10-int LTR ERVK -754 1233 990 3 732 591 316 81 13 chr9 19268019 19268327 -104807845 - IAP-d-int LTR ERVK -5392 1150 822 3 732 4071 94 174 124 chr9 19268488 19269423 -104806749 - RLTR10-int LTR ERVK -995 992 11 3 732 2125 77 30 20 chr9 19269428 19269732 -104806440 - IAPLTR2b LTR ERVK -20 307 1 3 732 538 250 18 9 chr9 19269755 19269864 -104806308 + MT2A LTR ERVL 14 123 -410 3 732 456 375 15 66 chr9 19269879 19270150 -104806022 + MT2A LTR ERVL 268 524 -77 3 732 324 0 0 0 chr9 19270164 19270200 -104805972 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 732 6140 247 67 15 chr9 19270250 19271933 -104804239 + MERVL_2A-int LTR ERVL 3 1773 -3988 3 732 5551 226 35 5 chr9 19271923 19273119 -104803053 + MERVL_2A-int LTR ERVL 3154 4385 -1376 3 732 1007 261 158 107 chr9 19273136 19273574 -104802598 - MT2A LTR ERVL -73 460 1 3 732 2017 270 30 5 chr9 19273575 19274170 -104802002 + Lx7 LINE L1 6758 7367 -329 3 732 22 80 0 0 chr9 19274172 19274222 -104801950 + AT_rich Low_complexity Low_complexity 1 50 0 3 732 1226 210 15 50 chr9 19274239 19274580 -104801592 + Lx7 LINE L1 7368 7696 0 3 732 274 373 34 27 chr9 19274777 19274923 -104801249 - B1_Mur1 SINE Alu 0 149 3 3 732 799 304 39 4 chr9 19274944 19275198 -104800974 - Lx9 LINE L1 -935 6709 6447 3 732 435 38 0 0 chr9 19275215 19275268 -104800904 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 732 409 224 55 18 chr9 19275274 19275438 -104800734 + Lx9 LINE L1 7440 7609 -35 3 732 237 65 0 0 chr9 19275453 19275484 -104800688 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 732 28 91 0 0 chr9 19275816 19275893 -104800279 + AT_rich Low_complexity Low_complexity 1 77 0 3 732 3336 98 47 2 chr9 19276009 19276501 -104799671 + L1_Mus3 LINE L1 6121 6634 -4 3 732 21 0 0 0 chr9 19276579 19276600 -104799572 + AT_rich Low_complexity Low_complexity 1 21 0 3 732 25 0 0 0 chr9 19277069 19277094 -104799078 + AT_rich Low_complexity Low_complexity 1 25 0 3 732 21 57 0 0 chr9 19277554 19277589 -104798583 + AT_rich Low_complexity Low_complexity 1 35 0 3 732 244 323 40 20 chr9 19277655 19277756 -104798416 - B3 SINE B2 -105 111 9 3 732 331 281 77 56 chr9 19277788 19277895 -104798277 - Lx9 LINE L1 -6 7638 7527 3 732 364 37 0 36 chr9 19277895 19277951 -104798221 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 732 331 281 77 56 chr9 19277951 19278077 -104798095 - Lx9 LINE L1 -118 7526 7400 3 732 3181 129 39 1 chr9 19278905 19279432 -104796740 + L1_Mus4 LINE L1 5665 6181 -455 3 732 180 0 0 0 chr9 19279433 19279453 -104796719 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 732 3572 77 11 2 chr9 19279468 19279939 -104796233 - L1_Mus2 LINE L1 0 6566 6092 3 732 2950 124 7 2 chr9 19279939 19280391 -104795781 + L1_Mus4 LINE L1 6185 6638 0 3 732 302 350 0 0 chr9 19280496 19280576 -104795596 - RSINE1 SINE B4 -5 160 81 3 732 543 25 37 0 chr9 19280609 19280690 -104795482 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 3 732 426 312 43 7 chr9 19280722 19280861 -104795311 - RSINE1 SINE B4 -18 147 4 3 732 278 261 32 54 chr9 19282808 19282901 -104793271 + B4A SINE B4 26 116 -176 3 732 579 29 0 0 chr9 19283307 19283376 -104792796 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 732 531 256 29 34 chr9 19283409 19283626 -104792546 - Lx8 LINE L1 -1515 5958 5744 3 732 261 0 0 0 chr9 19283678 19283707 -104792465 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 732 469 302 55 52 chr9 19284016 19284306 -104791866 - Lx8 LINE L1 -1438 6035 5745 3 732 2201 16 0 0 chr9 19284302 19284553 -104791619 - L1Md_A LINE L1 -690 5892 5642 3 732 8942 8 1 0 chr9 19284553 19285941 -104790231 - L1Md_T LINE L1 0 6582 5231 3 732 4991 29 0 0 chr9 19285939 19286530 -104789642 + L1Md_T LINE L1 4996 5586 -297 3 732 8141 47 0 0 chr9 19286530 19287526 -104788646 + L1Md_T LINE L1 5587 6582 0 3 732 4319 197 62 17 chr9 19287561 19287820 -104788352 + Lx5 LINE L1 3563 3859 -2018 3 732 405 0 0 0 chr9 19287820 19287865 -104788307 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 732 4319 197 62 17 chr9 19287865 19288674 -104787498 + Lx5 LINE L1 3860 4679 -1198 3 732 32992 89 14 3 chr9 19288684 19294397 -104781775 + L1Md_F2 LINE L1 330 6106 -476 3 732 3806 232 82 27 chr9 19294407 19296091 -104780081 + Lx5 LINE L1 5143 6956 -94 3 732 399 41 0 0 chr9 19296131 19296180 -104779992 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 732 299 327 107 85 chr9 19296216 19296390 -104779782 + Lx8 LINE L1 6617 6795 -678 3 732 420 20 0 0 chr9 19296390 19296439 -104779733 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 732 299 327 107 85 chr9 19296439 19296520 -104779652 + Lx8 LINE L1 6796 6885 -588 3 732 2138 159 15 32 chr9 19296520 19296928 -104779244 + Lx2 LINE L1 6596 6996 -1 3 732 299 327 107 85 chr9 19296928 19297072 -104779100 + Lx8 LINE L1 6886 7026 -447 3 732 25 0 0 0 chr9 19298743 19298768 -104777404 + AT_rich Low_complexity Low_complexity 1 25 0 3 732 21 0 0 0 chr9 19299154 19299175 -104776997 + AT_rich Low_complexity Low_complexity 1 21 0 3 732 267 246 31 0 chr9 19299293 19299358 -104776814 + (CATA)n Simple_repeat Simple_repeat 4 70 0 3 732 270 0 0 0 chr9 19300783 19300813 -104775359 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 732 286 376 30 8 chr9 19300883 19301017 -104775155 - B3A SINE B2 -56 142 6 3 732 216 86 0 0 chr9 19304353 19304388 -104771784 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 732 393 383 41 69 chr9 19304706 19305070 -104771102 + RMER15 LTR ERVL 182 535 -40 3 732 5920 152 32 9 chr9 19305410 19305435 -104770737 - Lx2 LINE L1 -10 6987 6967 3 732 321 47 0 0 chr9 19305435 19305478 -104770694 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 732 5920 152 32 9 chr9 19305478 19306473 -104769699 - Lx2 LINE L1 -31 6966 5944 3 732 2642 148 2 5 chr9 19306473 19306901 -104769271 + Lx2 LINE L1 5434 5860 -23 3 732 283 339 25 0 chr9 19307211 19307329 -104768843 + Lx8 LINE L1 6136 6256 -1217 3 732 1596 251 79 60 chr9 19307325 19307455 -104768717 - Lx9 LINE L1 -3 7641 7518 3 732 531 0 0 0 chr9 19307455 19307514 -104768658 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 732 1596 251 79 60 chr9 19307514 19307531 -104768641 - Lx9 LINE L1 -127 7517 7501 3 732 180 70 70 0 chr9 19307531 19307574 -104768598 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 732 1596 251 79 60 chr9 19307574 19308073 -104768099 - Lx9 LINE L1 -144 7500 6982 3 732 35202 45 0 3 chr9 19308089 19313339 -104762833 + L1Md_T LINE L1 262 5589 -297 3 732 8442 33 0 0 chr9 19313339 19314377 -104761795 + L1Md_T LINE L1 5590 6585 0 3 732 1840 281 47 38 chr9 19314377 19315042 -104761130 - Lx9 LINE L1 -668 6976 6306 3 732 763 226 118 16 chr9 19315083 19315406 -104760766 - L1_Rod LINE L1 -348 5499 5144 3 732 230 0 33 0 chr9 19315418 19315448 -104760724 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 732 1004 113 0 0 chr9 19315454 19315595 -104760577 - B1_Mus1 SINE Alu 0 148 8 3 732 1365 257 106 74 chr9 19315599 19316410 -104759762 - L1_Rod LINE L1 -691 5156 4320 3 732 1525 239 77 19 chr9 19316401 19316870 -104759302 + Lx9 LINE L1 746 1241 -6367 3 732 785 289 130 35 chr9 19316925 19317355 -104758817 + Lx9 LINE L1 6157 6627 -1017 3 732 243 231 32 168 chr9 19317685 19317810 -104758362 - LTR81B LTR ERV1? -878 515 408 3 732 185 108 27 0 chr9 19318160 19318197 -104757975 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 3 732 605 283 62 14 chr9 19318515 19318723 -104757449 + RLTR45 LTR ERVK 265 482 0 3 732 806 241 39 86 chr9 19318839 19319201 -104756971 - RLTR40 LTR ERVK -13 804 504 3 732 30 27 0 0 chr9 19319233 19319270 -104756902 + AT_rich Low_complexity Low_complexity 1 37 0 3 732 335 194 30 0 chr9 19319562 19319629 -104756543 + B1_Mus2 SINE Alu 13 81 -66 3 732 922 243 108 12 chr9 19319632 19319890 -104756282 - RLTR40 LTR ERVK -532 285 3 3 732 325 229 31 0 chr9 19319893 19319989 -104756183 + Lx9 LINE L1 7537 7635 -9 3 732 656 186 16 31 chr9 19320218 19320346 -104755826 + B1_Mm SINE Alu 1 126 -21 3 732 6494 146 55 19 chr9 19320731 19322013 -104754159 + Lx3B LINE L1 1952 3279 -2607 3 732 258 289 40 0 chr9 19321999 19322075 -104754097 + Lx9 LINE L1 6854 6932 -712 3 732 7430 106 12 5 chr9 19322067 19323615 -104752557 + L1_Mus3 LINE L1 5077 6638 0 3 732 5351 154 4 4 chr9 19323667 19324649 -104751523 + Lx3B LINE L1 3255 4236 -1650 3 732 7042 189 20 13 chr9 19324629 19324961 -104751211 + Lx3B LINE L1 5587 5917 -1056 3 732 287 25 25 0 chr9 19324961 19325001 -104751171 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 3 732 7042 189 20 13 chr9 19325001 19326033 -104750139 + Lx3B LINE L1 5918 6960 -13 3 732 269 337 43 62 chr9 19326088 19326411 -104749761 + L1MA6 LINE L1 5691 6007 -293 3 732 2985 219 150 17 chr9 19326733 19327500 -104748672 - RMER13A LTR ERVK 0 908 1 3 732 1017 85 0 0 chr9 19327711 19327852 -104748320 + (TC)n Simple_repeat Simple_repeat 2 142 0 3 732 826 289 69 10 chr9 19327981 19328285 -104747887 + Lx9 LINE L1 6982 7303 -341 3 732 198 71 0 0 chr9 19328419 19328447 -104747725 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 732 864 251 31 40 chr9 19328499 19328844 -104747328 - RLTR40 LTR ERVK -39 778 504 3 732 1044 234 125 25 chr9 19328825 19329145 -104747027 - RLTR40 LTR ERVK -461 356 5 3 732 320 232 11 0 chr9 19329154 19329249 -104746923 + Lx9 LINE L1 7541 7636 -8 3 732 22 0 0 0 chr9 19329419 19329441 -104746731 + AT_rich Low_complexity Low_complexity 1 22 0 3 732 385 364 0 34 chr9 19329703 19329908 -104746264 + B3A SINE B2 1 198 0 3 732 1219 270 209 24 chr9 19330460 19330964 -104745208 + Lx5 LINE L1 6454 7050 0 3 732 10095 162 82 8 chr9 19331207 19333902 -104742270 + L1_Mur1 LINE L1 147 3287 -2599 3 732 1778 130 90 0 chr9 19333951 19334251 -104741921 - IAPEY3_LTR LTR ERVK -5 327 1 3 732 1634 115 0 77 chr9 19334251 19334525 -104741647 + L1_Mus2 LINE L1 6313 6565 -1 3 732 5272 96 99 1 chr9 19334512 19335297 -104740875 + L1_Mus3 LINE L1 5775 6636 -2 3 732 4378 166 21 3 chr9 19335295 19336063 -104740109 + Lx3B LINE L1 6187 6968 -5 3 732 29 0 0 0 chr9 19336745 19336774 -104739398 + AT_rich Low_complexity Low_complexity 1 29 0 3 732 528 16 0 0 chr9 19337028 19337089 -104739083 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 732 1010 121 98 6 chr9 19337643 19337817 -104738355 + B2_Mm2 SINE B2 6 195 0 3 732 180 0 0 0 chr9 19338063 19338083 -104738089 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 732 555 29 0 0 chr9 19338316 19338385 -104737787 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 732 462 327 18 79 chr9 19338422 19338651 -104737521 - RLTR26 LTR ERVK -427 215 1 3 732 647 177 13 39 chr9 19338484 19338664 -104737508 + RMER17A2 LTR ERVK 1 176 -466 3 732 340 288 9 0 chr9 19338877 19338988 -104737184 - Lx9 LINE L1 -599 7045 6934 3 732 4430 65 32 0 chr9 19338984 19339634 -104736538 - L1_Mus2 LINE L1 -390 6176 5510 4 732 2835 82 0 3 chr9 19339634 19340014 -104736158 + L1_Mus2 LINE L1 6187 6565 -1 4 732 228 263 26 13 chr9 19340028 19340105 -104736067 - Lx9 LINE L1 -695 6949 6872 3 732 2225 180 11 25 chr9 19340944 19341417 -104734755 + Lx LINE L1 6187 6652 -2 4 732 24 37 0 53 chr9 19342574 19342631 -104733541 + AT_rich Low_complexity Low_complexity 1 54 0 4 732 899 236 106 0 chr9 19342957 19343258 -104732914 + Lx9 LINE L1 7305 7637 -7 4 732 46 62 0 0 chr9 19343514 19343595 -104732577 + AT_rich Low_complexity Low_complexity 1 81 0 4 732 28 48 0 0 chr9 19343960 19344002 -104732170 + AT_rich Low_complexity Low_complexity 1 42 0 4 732 21 0 0 0 chr9 19344170 19344191 -104731981 + AT_rich Low_complexity Low_complexity 1 21 0 4 732 1804 135 0 7 chr9 19344202 19344478 -104731694 - Lx2B LINE L1 -447 6553 6280 4 732 2090 215 34 13 chr9 19344487 19344958 -104731214 + Lx2 LINE L1 6516 6996 -1 4 732 264 122 0 0 chr9 19345795 19345836 -104730336 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 732 3881 160 20 23 chr9 19345851 19346541 -104729631 - Lx3B LINE L1 -3 6970 6283 4 732 1252 103 22 0 chr9 19346652 19346837 -104729335 - B2_Mm2 SINE B2 -3 192 4 4 732 236 394 26 11 chr9 19346839 19347111 -104729061 - L1M5 LINE L1 -378 5801 5526 4 732 507 45 0 0 chr9 19347376 19347442 -104728730 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 732 26 82 0 0 chr9 19347451 19347512 -104728660 + AT_rich Low_complexity Low_complexity 1 61 0 4 732 1077 207 120 0 chr9 19347917 19348159 -104728013 - Lx3C LINE L1 0 6976 6706 4 732 711 225 6 6 chr9 19348172 19348346 -104727826 + Lx2B LINE L1 6817 6990 -10 4 732 186 43 0 0 chr9 19348349 19348372 -104727800 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 4 732 11436 114 10 20 chr9 19348665 19350573 -104725599 + MusHAL1 LINE L1 370 2257 -455 4 732 1440 12 0 0 chr9 19350571 19350733 -104725439 - L1Md_F2 LINE L1 -834 5748 5587 4 732 5606 44 0 0 chr9 19350738 19351417 -104724755 + L1Md_F2 LINE L1 5893 6571 -11 4 732 34676 62 7 2 chr9 19351424 19356610 -104719562 + L1Md_F3 LINE L1 418 5586 -297 4 732 8026 45 4 6 chr9 19356610 19357610 -104718562 + L1Md_F3 LINE L1 5587 6584 0 4 732 13115 152 22 9 chr9 19357631 19360159 -104716013 + L1_Mus3 LINE L1 3446 6011 -627 4 732 34961 67 1 3 chr9 19360160 19365553 -104710619 + L1Md_F2 LINE L1 468 5947 -638 4 732 290 80 20 0 chr9 19365924 19365974 -104710198 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 732 469 346 57 0 chr9 19366540 19366699 -104709473 - B3 SINE B2 -7 209 42 4 732 1126 124 113 18 chr9 19366715 19366937 -104709235 - Lx2 LINE L1 0 6997 6755 4 732 23 0 0 0 chr9 19366986 19367009 -104709163 + AT_rich Low_complexity Low_complexity 1 23 0 4 732 269 195 122 17 chr9 19367050 19367165 -104709007 - Lx9 LINE L1 -41 7603 7477 4 732 242 245 0 0 chr9 19367178 19367231 -104708941 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 732 315 0 0 0 chr9 19367256 19367291 -104708881 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 732 248 262 22 67 chr9 19367941 19368031 -104708141 + MTE2a LTR MaLR 289 374 -5 4 732 588 358 49 40 chr9 19368304 19368755 -104707417 + Lx8 LINE L1 7008 7462 -11 4 732 24 53 0 0 chr9 19369615 19369653 -104706519 + AT_rich Low_complexity Low_complexity 1 38 0 4 732 276 309 0 87 chr9 19369857 19369949 -104706223 - RSINE1 SINE B4 -1 164 81 4 732 564 89 0 0 chr9 19369988 19370067 -104706105 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 732 258 387 14 0 chr9 19370101 19370243 -104705929 - RSINE1 SINE B4 -18 147 4 4 732 276 324 9 26 chr9 19371922 19372036 -104704136 + B4 SINE B4 5 116 -176 4 732 24 32 0 0 chr9 19372478 19372509 -104703663 + AT_rich Low_complexity Low_complexity 1 31 0 4 732 12242 207 34 14 chr9 19372544 19374892 -104701280 - Lx5 LINE L1 -3 7047 4626 4 732 210 37 0 0 chr9 19374892 19374919 -104701253 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 732 12242 206 16 17 chr9 19374919 19375203 -104700969 - Lx5 LINE L1 -1252 4625 4346 4 732 513 0 0 0 chr9 19375203 19375260 -104700912 + (ATTAG)n Simple_repeat Simple_repeat 4 60 0 4 732 12242 206 16 17 chr9 19375260 19376543 -104699629 - Lx5 LINE L1 -1532 4345 3071 4 732 4277 177 27 9 chr9 19376558 19377329 -104698843 - Lx2B LINE L1 -39 6961 6177 4 732 2214 177 32 20 chr9 19377747 19378182 -104697990 + RMER13B LTR ERVK 1 440 -468 4 732 448 0 19 0 chr9 19378182 19378236 -104697936 - MTB LTR MaLR 0 400 346 4 732 2122 62 120 0 chr9 19378222 19378530 -104697642 - MT2C_Mm LTR ERVL -130 345 1 4 732 1667 223 41 28 chr9 19378531 19378997 -104697175 + RMER13B LTR ERVK 437 908 0 4 732 1296 146 7 78 chr9 19379001 19379284 -104696888 - Lx2B LINE L1 -856 6141 5879 4 732 3077 200 38 9 chr9 19379281 19379870 -104696302 + L1_Mur2 LINE L1 5168 5754 -123 4 732 641 12 25 0 chr9 19379870 19379951 -104696221 + (GAATG)n Simple_repeat Simple_repeat 2 84 0 4 732 3077 200 38 9 chr9 19379951 19380023 -104696149 + L1_Mur2 LINE L1 5755 5847 -30 4 732 3525 197 289 9 chr9 19380000 19380116 -104696056 - Lx5 LINE L1 -2763 3114 2991 4 732 2955 40 0 0 chr9 19380116 19380462 -104695710 - ORR1A0 LTR MaLR 0 346 1 4 732 3525 197 289 9 chr9 19380462 19381500 -104694672 - Lx5 LINE L1 -2887 2990 1637 4 732 9371 122 27 22 chr9 19381513 19383791 -104692381 - Lx3A LINE L1 0 6981 4677 4 732 207 88 0 0 chr9 19383791 19383825 -104692347 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 732 9371 105 36 15 chr9 19383825 19384094 -104692078 - Lx3A LINE L1 -1210 4676 4413 4 732 26 50 0 0 chr9 19384172 19384212 -104691960 + AT_rich Low_complexity Low_complexity 1 40 0 4 732 203 227 36 36 chr9 19384735 19384872 -104691300 + (TTATA)n Simple_repeat Simple_repeat 4 140 0 4 732 29 0 0 0 chr9 19385056 19385085 -104691087 + AT_rich Low_complexity Low_complexity 1 29 0 4 732 818 130 65 7 chr9 19385679 19385818 -104690354 - B1_Mus1 SINE Alu 0 148 2 4 732 659 338 45 11 chr9 19385956 19386276 -104689896 - ORR1E LTR MaLR -21 358 1 4 732 244 298 157 9 chr9 19386276 19386365 -104689807 - ORR1E-int LTR MaLR -53 1527 1422 4 732 255 159 125 16 chr9 19387579 19387643 -104688529 - MLT1A0 LTR MaLR -15 350 280 4 732 23 0 0 0 chr9 19387763 19387786 -104688386 + AT_rich Low_complexity Low_complexity 1 23 0 4 732 406 279 90 37 chr9 19388402 19388536 -104687636 + ORR1E LTR MaLR 19 159 -200 4 732 208 102 41 0 chr9 19390145 19390194 -104685978 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 4 732 398 306 10 0 chr9 19390319 19390417 -104685755 + RSINE1 SINE B4 3 101 -64 4 732 432 250 37 0 chr9 19390521 19390657 -104685515 - L1_Mur3 LINE L1 -434 5446 5306 4 732 6837 144 30 55 chr9 19390660 19392313 -104683859 - Lx3C LINE L1 -9 6967 5354 4 732 1123 268 62 10 chr9 19392306 19392822 -104683350 - L1_Mur3 LINE L1 -1069 4811 4269 4 732 2872 146 10 4 chr9 19392830 19393317 -104682855 - Lx2 LINE L1 0 6997 6508 4 732 12081 174 22 12 chr9 19393317 19395070 -104681102 - Lx2 LINE L1 -596 6401 4623 4 732 326 23 23 0 chr9 19395070 19395113 -104681059 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 732 12081 180 14 7 chr9 19395113 19396381 -104679791 - Lx2 LINE L1 -1255 4622 3359 4 732 4023 159 8 1 chr9 19396396 19397267 -104678905 + L1_Mus4 LINE L1 5103 5982 -654 4 732 6335 97 10 3 chr9 19397267 19398154 -104678018 - RLTR13B1 LTR ERVK 0 893 1 4 732 30 105 0 0 chr9 19398442 19398556 -104677616 + AT_rich Low_complexity Low_complexity 1 114 0 4 733 227 244 24 35 chr9 19398724 19398809 -104677363 + RLTR22_Mur LTR ERVK 1 84 -1764 4 733 3253 67 2 0 chr9 19398895 19399313 -104676859 - L1Md_T LINE L1 -1 6581 6163 4 733 630 37 0 0 chr9 19399313 19399395 -104676777 - L1Md_T LINE L1 -577 6005 5924 4 733 2194 108 0 10 chr9 19399393 19399776 -104676396 - L1Md_Gf LINE L1 -6111 411 33 4 733 10222 22 0 0 chr9 19399775 19401015 -104675157 + L1Md_T LINE L1 4347 5586 -297 4 733 8286 38 0 3 chr9 19401015 19402013 -104674159 + L1Md_T LINE L1 5587 6581 -1 4 733 234 62 0 0 chr9 19402036 19402068 -104674104 + (A)n Simple_repeat Simple_repeat 1 32 0 4 733 24405 56 1 22 chr9 19402068 19406098 -104670074 - L1Md_F LINE L1 -1524 4359 460 4 733 886 234 19 21 chr9 19406098 19406345 -104669827 + RLTR22_Mur LTR ERVK 76 328 -994 4 733 1294 150 26 0 chr9 19406346 19406572 -104669600 - L1_Mm LINE L1 -350 5533 5302 4 733 1778 103 22 4 chr9 19406588 19406860 -104669312 - L1_Mus3 LINE L1 -2 6636 6360 4 733 2767 25 3 0 chr9 19406860 19407181 -104668991 - RLTRETN_Mm LTR ERVK 0 322 1 4 733 39231 19 11 8 chr9 19407181 19408638 -104667534 - MMETn-int LTR ERVK 0 4844 3364 4 733 6422 60 32 5 chr9 19408638 19409470 -104666702 + RLTR13A LTR ERVK 1 855 0 4 733 39231 19 11 8 chr9 19409470 19412839 -104663333 - MMETn-int LTR ERVK -1481 3363 1 4 733 2811 12 3 0 chr9 19412839 19413160 -104663012 - RLTRETN_Mm LTR ERVK 0 322 1 4 733 5451 115 130 3 chr9 19413160 19414493 -104661679 - L1_Mus3 LINE L1 -273 6365 4848 4 733 12296 146 40 28 chr9 19414486 19416551 -104659621 - L1_Mus3 LINE L1 -1966 3917 1764 4 733 1541 42 10 10 chr9 19416551 19416743 -104659429 - B2_Mm1a SINE B2 -1 192 1 4 733 12296 146 40 28 chr9 19416743 19417144 -104659028 - L1_Mus3 LINE L1 -4120 1763 1421 4 733 667 208 23 11 chr9 19417150 19417325 -104658847 + Lx6 LINE L1 2820 2996 -2881 4 733 538 238 27 20 chr9 19417721 19417871 -104658301 + Lx5 LINE L1 6477 6627 -423 4 733 1782 206 142 17 chr9 19417871 19418045 -104658127 - RLTR31A_Mm LTR ERVK 0 561 318 4 733 557 121 8 25 chr9 19418045 19418164 -104658008 - L1_Mus4 LINE L1 -3 6633 6517 4 733 1782 194 29 3 chr9 19418164 19418475 -104657697 - RLTR31A_Mm LTR ERVK -267 317 2 4 733 1682 240 41 24 chr9 19418475 19418894 -104657278 + Lx5 LINE L1 6622 7047 -3 4 733 243 0 0 0 chr9 19418899 19418926 -104657246 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 733 335 208 125 0 chr9 19418927 19418967 -104657205 + Lx6 LINE L1 3008 3048 -2832 4 733 228 35 0 0 chr9 19418967 19418996 -104657176 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 733 335 208 125 0 chr9 19418996 19419075 -104657097 + Lx6 LINE L1 3049 3141 -2739 4 733 4864 225 27 12 chr9 19419070 19420347 -104655825 + Lx6 LINE L1 4576 5871 -6 4 733 1713 276 162 8 chr9 19421537 19422197 -104653975 + Lx6 LINE L1 6088 6849 -611 4 733 616 289 20 0 chr9 19422207 19422408 -104653764 + Lx6 LINE L1 7095 7299 -161 4 733 937 66 0 0 chr9 19422408 19422530 -104653642 - B1_Mus1 SINE Alu -25 123 2 4 733 3278 236 99 8 chr9 19422532 19422916 -104653256 - Lx7 LINE L1 -1104 6592 6193 4 733 234 0 0 0 chr9 19422916 19422942 -104653230 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 733 4823 219 54 17 chr9 19422942 19424420 -104651752 - Lx7 LINE L1 -1504 6192 4634 4 733 459 0 0 0 chr9 19424420 19424471 -104651701 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 733 4823 215 45 19 chr9 19424471 19424583 -104651589 - Lx7 LINE L1 -1247 4633 4513 4 733 899 299 91 21 chr9 19424595 19424926 -104651246 - ORR1E LTR MaLR -5 354 1 4 733 334 290 74 9 chr9 19424928 19425036 -104651136 - RMER5 LTR ERV1 -222 312 198 4 733 613 98 0 29 chr9 19425131 19425236 -104650936 + (GAAA)n Simple_repeat Simple_repeat 2 103 0 4 733 391 353 75 40 chr9 19425388 19425763 -104650409 + RMER5 LTR ERV1 105 492 -42 4 733 491 143 22 0 chr9 19426060 19426151 -104650021 + (CATA)n Simple_repeat Simple_repeat 2 94 0 4 733 302 136 0 0 chr9 19426151 19426195 -104649977 + HAL1-3A_ME LINE L1 1975 2018 -840 4 733 302 136 0 0 chr9 19426199 19426243 -104649929 + HAL1-3A_ME LINE L1 1975 2018 -840 4 733 322 329 43 0 chr9 19426456 19426596 -104649576 + LTR33C LTR ERVL 40 185 -444 4 733 230 247 22 22 chr9 19427288 19427379 -104648793 + L1MB4 LINE L1 6068 6158 -22 4 733 404 95 14 0 chr9 19427822 19427896 -104648276 - L1Md_F2 LINE L1 0 6582 6508 4 733 313 271 72 48 chr9 19428219 19428386 -104647786 - L1MD LINE L1 -2903 3243 3073 4 733 405 39 0 0 chr9 19428593 19428644 -104647528 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 733 566 262 7 47 chr9 19428753 19428901 -104647271 + ID_B1 SINE B4 83 224 0 4 733 356 247 21 31 chr9 19429131 19429227 -104646945 - B1_Mur1 SINE Alu -21 128 34 5 733 369 318 93 93 chr9 19430797 19431163 -104645009 - MTD LTR MaLR -13 366 6 5 733 272 329 14 0 chr9 19431889 19431959 -104644213 - ID2 SINE ID -7 76 6 5 733 267 31 0 0 chr9 19432048 19432080 -104644092 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 733 366 23 0 0 chr9 19432080 19432123 -104644049 + (TAG)n Simple_repeat Simple_repeat 3 45 0 5 733 184 342 115 18 chr9 19432233 19432346 -104643826 - L2 LINE L2 -339 3080 2957 5 733 231 338 97 35 chr9 19432485 19432629 -104643543 - L2 LINE L2 -706 2713 2561 5 733 562 349 79 49 chr9 19432697 19432962 -104643210 - B4A SINE B4 -9 283 11 5 733 250 308 0 25 chr9 19432963 19433043 -104643129 - ID2 SINE ID -3 80 3 5 733 2290 190 107 32 chr9 19434001 19434625 -104641547 - RMER1B Other Other -2 1064 394 5 733 477 122 0 0 chr9 19434628 19434702 -104641470 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 733 222 37 0 0 chr9 19434702 19434729 -104641443 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 733 244 292 0 0 chr9 19434729 19434794 -104641378 + (TATATG)n Simple_repeat Simple_repeat 3 67 0 5 733 195 42 0 0 chr9 19435604 19435628 -104640544 + (T)n Simple_repeat Simple_repeat 1 24 0 5 733 317 311 22 0 chr9 19435684 19435774 -104640398 + RSINE1 SINE B4 7 98 -67 5 733 248 168 126 0 chr9 19435897 19435992 -104640180 + Lx9 LINE L1 7532 7638 -6 5 733 1153 75 0 0 chr9 19435996 19436142 -104640030 + B1_Mus2 SINE Alu 1 146 -1 5 733 29 60 0 0 chr9 19436146 19436196 -104639976 + AT_rich Low_complexity Low_complexity 1 50 0 5 733 674 291 55 11 chr9 19436409 19436590 -104639582 + B3 SINE B2 3 191 -25 5 733 731 250 68 28 chr9 19436605 19436963 -104639209 - L1MB3 LINE L1 -2 6172 5794 5 733 223 340 10 10 chr9 19437001 19437099 -104639073 + CT-rich Low_complexity Low_complexity 5 102 0 5 733 180 77 0 0 chr9 19437209 19437235 -104638937 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 733 249 33 0 0 chr9 19437528 19437558 -104638614 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 733 37510 32 3 6 chr9 19437577 19443792 -104632380 - L1Md_T LINE L1 0 6582 391 5 733 611 215 55 6 chr9 19443897 19444061 -104632111 - Lx7 LINE L1 -395 7301 7130 5 733 4605 188 201 29 chr9 19444059 19445515 -104630657 - L1_Mur3 LINE L1 -179 5701 3996 5 733 252 236 3 27 chr9 19445924 19445998 -104630174 + MIR SINE MIR 84 153 -123 5 733 482 280 6 6 chr9 19447033 19447191 -104628981 + MurSatRep1 Unknown Unknown 605 762 -1375 5 733 255 373 56 25 chr9 19447405 19447567 -104628605 + B4A SINE B4 9 175 -117 5 733 336 48 0 0 chr9 19447635 19447677 -104628495 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 733 579 29 0 0 chr9 19447677 19447745 -104628427 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 733 373 282 0 0 chr9 19447755 19447833 -104628339 + ID2 SINE ID 6 83 0 5 733 834 291 16 57 chr9 19448349 19448596 -104627576 - MTEa LTR MaLR -33 346 110 5 733 1063 199 26 0 chr9 19448596 19448787 -104627385 + RLTR25A LTR ERVK 3 198 -905 5 733 2536 179 42 27 chr9 19448786 19449313 -104626859 + RLTR25A LTR ERVK 569 1103 0 5 733 415 267 156 100 chr9 19449880 19450130 -104626042 - MER2 DNA MER2_type 0 345 82 5 733 237 304 54 89 chr9 19450379 19450491 -104625681 - PB1D10 SINE Alu -1 116 9 5 733 1930 179 62 25 chr9 19450542 19450948 -104625224 - MTC LTR MaLR 0 421 1 5 733 994 38 104 15 chr9 19452851 19452985 -104623187 - B1_Mus1 SINE Alu 0 148 3 5 733 532 328 60 0 chr9 19453092 19453293 -104622879 + MER20 DNA MER1_type 1 213 -6 5 733 249 282 11 23 chr9 19456287 19456374 -104619798 + BC1_Mm scRNA scRNA 28 113 -39 5 733 318 376 45 0 chr9 19456822 19456955 -104619217 - ID_B1 SINE B4 -62 162 24 5 733 390 205 0 0 chr9 19457713 19457796 -104618376 + (TATG)n Simple_repeat Simple_repeat 2 84 0 5 733 350 171 71 126 chr9 19458131 19458258 -104617914 + Lx7 LINE L1 7415 7534 -162 5 733 263 252 111 0 chr9 19458272 19458371 -104617801 + Lx7 LINE L1 7584 7693 -3 5 733 387 0 0 0 chr9 19459821 19459864 -104616308 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 733 676 295 104 29 chr9 19460193 19460567 -104615605 - Lx8 LINE L1 -1 7472 7071 5 733 270 0 0 0 chr9 19460794 19460824 -104615348 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 733 576 0 0 0 chr9 19460824 19460887 -104615285 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 733 5796 2 3 0 chr9 19461964 19462604 -104613568 + L1Md_A LINE L1 5941 6582 0 5 733 228 67 0 0 chr9 19463987 19464017 -104612155 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 733 243 333 26 0 chr9 19464117 19464195 -104611977 + ID4_ SINE ID 2 81 -2 5 733 22 70 0 0 chr9 19464213 19464256 -104611916 + AT_rich Low_complexity Low_complexity 1 43 0 5 733 303 309 101 18 chr9 19464267 19464435 -104611737 + MER2 DNA MER2_type 107 288 -57 5 733 686 185 90 30 chr9 19464590 19464757 -104611415 - Lx4A LINE L1 -4 7054 6878 5 733 227 387 27 0 chr9 19464784 19464859 -104611313 + ID4_ SINE ID 4 80 -3 5 733 181 109 21 21 chr9 19464860 19464907 -104611265 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 5 733 2271 155 13 0 chr9 19465328 19465715 -104610457 + Lx2B LINE L1 6378 6769 -231 5 733 2120 39 0 0 chr9 19465974 19466234 -104609938 - L1Md_F2 LINE L1 -97 5786 5527 5 733 6625 36 5 6 chr9 19466234 19467042 -104609130 + L1Md_F2 LINE L1 5776 6582 0 5 733 326 313 26 76 chr9 19467146 19467395 -104608777 + Lx7 LINE L1 5502 5774 -1922 5 733 339 25 0 0 chr9 19467497 19467537 -104608635 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 733 842 19 10 0 chr9 19468255 19468359 -104607813 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 5 733 497 30 15 0 chr9 19468962 19469029 -104607143 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 733 22 35 0 0 chr9 19469749 19469778 -104606394 + AT_rich Low_complexity Low_complexity 1 29 0 5 733 341 313 12 81 chr9 19470056 19470216 -104605956 + RMER10B LTR ERVL 250 398 0 5 733 445 241 11 155 chr9 19470230 19470513 -104605659 - Lx7 LINE L1 -55 7641 7402 5 733 387 0 0 0 chr9 19470513 19470556 -104605616 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 733 445 241 11 155 chr9 19470556 19470646 -104605526 - Lx7 LINE L1 -295 7401 7322 5 733 1113 97 0 0 chr9 19470648 19470793 -104605379 + B1_Mm SINE Alu 1 145 -2 5 733 1662 208 96 18 chr9 19470816 19471102 -104605070 - MTC LTR MaLR 0 421 106 5 733 1059 106 0 0 chr9 19471102 19471243 -104604929 + B1_Mus1 SINE Alu 2 142 -6 5 733 870 10 0 0 chr9 19471244 19471343 -104604829 + (GAA)n Simple_repeat Simple_repeat 1 99 0 5 733 1662 208 96 18 chr9 19471343 19471441 -104604731 - MTC LTR MaLR -316 105 5 5 733 702 166 43 0 chr9 19471454 19471617 -104604555 - MTC-int LTR MaLR -25 1233 1064 5 733 34459 54 17 2 chr9 19471619 19477201 -104598971 - L1Md_F2 LINE L1 -10 6572 906 5 733 1216 174 174 0 chr9 19477201 19477471 -104598701 - L1Md_F2 LINE L1 -5987 629 313 5 733 281 197 0 0 chr9 19477474 19477535 -104598637 - L1Md_F LINE L1 -6190 329 269 5 733 1169 294 108 36 chr9 19477582 19478369 -104597803 - Lx7 LINE L1 -1072 6624 5781 5 733 5254 121 27 30 chr9 19478399 19478510 -104597662 - Lx3A LINE L1 0 6981 6854 5 733 222 62 0 0 chr9 19478510 19478542 -104597630 + (CACCC)n Simple_repeat Simple_repeat 3 34 0 5 733 5254 121 27 30 chr9 19478542 19479284 -104596888 - Lx3A LINE L1 -128 6853 6131 5 733 16602 108 6 21 chr9 19479284 19482242 -104593930 + Lx3_Mus LINE L1 3228 6134 -875 5 733 1877 244 48 7 chr9 19482235 19482833 -104593339 - Lx7 LINE L1 -85 5795 5173 5 733 3733 200 75 14 chr9 19482854 19483860 -104592312 - Lx7 LINE L1 -3107 2773 1707 5 733 2473 214 79 2 chr9 19483873 19484444 -104591728 - Lx4B LINE L1 -5 7053 6439 5 733 893 206 48 0 chr9 19484442 19484690 -104591482 - Lx7 LINE L1 -4190 1690 1431 5 733 21 0 0 0 chr9 19484690 19484711 -104591461 + AT_rich Low_complexity Low_complexity 1 21 0 5 733 1047 273 57 11 chr9 19484757 19485217 -104590955 + Lx9 LINE L1 4482 4939 -908 5 733 6439 146 36 18 chr9 19485215 19486656 -104589516 + Lx LINE L1 5486 6994 -3 5 733 450 274 93 35 chr9 19486716 19486973 -104589199 + Lx9 LINE L1 5844 6115 -1529 5 733 1028 81 0 0 chr9 19487008 19487144 -104589028 - B1_Mus1 SINE Alu 0 148 13 5 733 28 0 0 0 chr9 19487151 19487179 -104588993 + AT_rich Low_complexity Low_complexity 1 28 0 5 733 276 130 0 0 chr9 19487204 19487250 -104588922 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 733 624 27 0 0 chr9 19487268 19487342 -104588830 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 5 733 266 259 11 34 chr9 19487347 19487435 -104588737 + Lx9 LINE L1 6354 6439 -1205 5 733 456 221 0 34 chr9 19487438 19487555 -104588617 + ORR1B1 LTR MaLR 281 393 -1 5 733 578 291 62 77 chr9 19487875 19488291 -104587881 + Lx3_Mus LINE L1 649 1056 -5578 5 733 9200 223 43 88 chr9 19488296 19490314 -104585858 + Lx3_Mus LINE L1 2078 4150 -1727 5 733 1482 264 14 27 chr9 19490314 19490757 -104585415 - BGLII_B LTR ERVK 0 441 5 5 733 9200 223 43 88 chr9 19490757 19492041 -104584131 + Lx3_Mus LINE L1 4151 5199 -678 5 733 5462 114 22 9 chr9 19492041 19492897 -104583275 - Lx3_Mus LINE L1 -2 7007 6141 5 733 9200 178 35 48 chr9 19492897 19493593 -104582579 + Lx3_Mus LINE L1 5200 5906 -1103 5 733 432 0 0 0 chr9 19493593 19493641 -104582531 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 733 3293 125 24 2 chr9 19493641 19493855 -104582317 + Lx3_Mus LINE L1 5907 6131 -878 5 733 826 47 0 0 chr9 19493850 19493956 -104582216 + L1_Mus4 LINE L1 5589 5694 -942 5 733 790 193 30 38 chr9 19493957 19494154 -104582018 + RMER17A2 LTR ERVK 1 192 -617 5 733 251 342 55 80 chr9 19494104 19494342 -104581830 - RLTR41 LTR ERV1 -29 417 186 5 733 339 213 0 0 chr9 19496280 19496355 -104579817 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 733 995 66 0 7 chr9 19496796 19496933 -104579239 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 5 733 208 91 0 57 chr9 19497321 19497339 -104578833 + (GAAA)n Simple_repeat Simple_repeat 1 18 0 5 733 1023 119 11 6 chr9 19497339 19497516 -104578656 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 733 208 91 0 57 chr9 19497516 19497532 -104578640 + (GAAA)n Simple_repeat Simple_repeat 3 17 0 5 733 250 402 9 0 chr9 19498579 19498691 -104577481 + RSINE1 SINE B4 8 120 -45 5 733 2464 136 12 12 chr9 19498716 19499125 -104577047 - RLTR9E LTR ERVK 0 409 1 5 733 492 68 0 40 chr9 19499127 19499203 -104576969 - ETnERV2-int LTR ERVK -3 7403 7331 5 733 2342 158 11 32 chr9 19499418 19500000 -104576172 - ETnERV2-int LTR ERVK -1184 6222 5891 5 733 13863 210 30 18 chr9 19500000 19504628 -104571544 - ETnERV2-int LTR ERVK -1516 5890 571 1 733 20046 68 3 1 chr9 19504663 19508050 -104568122 - L1Md_F2 LINE L1 -4 6578 3188 2 733 653 102 0 0 chr9 19508052 19508140 -104568032 - L1Md_F2 LINE L1 -6336 280 193 2 733 24 77 0 0 chr9 19508158 19508210 -104567962 + AT_rich Low_complexity Low_complexity 1 52 0 3 733 2187 183 35 77 chr9 19508374 19508918 -104567254 - ETnERV2-int LTR ERVK -2755 559 39 1 733 1954 126 74 14 chr9 19508932 19509291 -104566881 - RLTR9E LTR ERVK -27 366 3 4 733 213 39 0 0 chr9 19509369 19509395 -104566777 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 733 343 281 37 122 chr9 19509554 19509882 -104566290 + RMER10A LTR ERVL 130 429 -13 6 733 181 53 25 50 chr9 19510576 19510616 -104565556 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 733 1080 103 0 0 chr9 19510618 19510764 -104565408 - B1_Mus1 SINE Alu -1 147 2 8 733 243 0 0 0 chr9 19511394 19511421 -104564751 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 733 22 0 0 0 chr9 19511637 19511659 -104564513 + AT_rich Low_complexity Low_complexity 1 22 0 1 733 387 0 0 0 chr9 19511991 19512034 -104564138 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 733 1734 256 146 86 chr9 19512064 19512829 -104563343 + RMER17B LTR ERVK 1 811 -147 1 733 296 342 92 20 chr9 19512796 19512948 -104563224 + RMER17B LTR ERVK 689 851 -107 1 733 585 159 41 0 chr9 19513218 19513363 -104562809 + Lx9 LINE L1 7487 7637 -7 1 733 491 235 140 5 chr9 19514747 19514961 -104561211 - Lx9 LINE L1 0 7644 7402 1 733 341 353 75 8 chr9 19515425 19515545 -104560627 + B4 SINE B4 6 133 -159 1 733 590 237 0 28 chr9 19515614 19515757 -104560415 - B3A SINE B2 -57 141 3 1 733 38 0 0 0 chr9 19515759 19515797 -104560375 + AT_rich Low_complexity Low_complexity 1 38 0 1 733 2154 108 0 12 chr9 19516320 19516647 -104559525 - L1Md_F2 LINE L1 -4 6578 6256 1 733 472 206 23 34 chr9 19516709 19516885 -104559287 + CT-rich Low_complexity Low_complexity 4 177 0 1 733 195 100 0 0 chr9 19516884 19516914 -104559258 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 2 733 884 321 104 11 chr9 19518245 19518689 -104557483 + RCHARR1 DNA MER1_type 37 521 -453 2 733 422 310 75 45 chr9 19518690 19518957 -104557215 + Lx8 LINE L1 7190 7464 -9 2 733 354 327 40 18 chr9 19519025 19519252 -104556920 + RCHARR1 DNA MER1_type 553 784 -190 2 733 414 284 79 9 chr9 19519451 19519678 -104556494 - L1M2 LINE L1 -487 5810 5568 2 733 411 286 80 80 chr9 19519902 19520153 -104556019 - RMER2 LTR ERV1 -27 540 290 2 733 4288 30 0 0 chr9 19520374 19520875 -104555297 + L1Md_T LINE L1 6082 6582 0 2 733 235 22 67 0 chr9 19520886 19520931 -104555241 + L1Md_F3 LINE L1 6535 6582 -2 2 733 326 65 10 88 chr9 19521055 19521157 -104555015 + A-rich Low_complexity Low_complexity 2 95 0 2 733 416 282 7 131 chr9 19521181 19521479 -104554693 + L1_Mur3 LINE L1 1509 1769 -4111 2 733 1106 273 19 6 chr9 19521480 19521862 -104554310 + L1_Mur3 LINE L1 3960 4385 -1761 2 733 5085 101 11 7 chr9 19521858 19522755 -104553417 - L1_Mm LINE L1 -653 5230 3677 2 733 377 345 53 6 chr9 19522835 19523004 -104553168 - B3A SINE B2 -18 180 4 3 733 24 32 0 0 chr9 19523064 19523095 -104553077 + AT_rich Low_complexity Low_complexity 1 31 0 3 733 2237 252 28 7 chr9 19523096 19523665 -104552507 - Lx3C LINE L1 -8 7050 6391 3 733 3600 224 26 12 chr9 19523670 19524444 -104551728 - Lx2B LINE L1 -6 6994 6210 3 733 1651 289 11 3 chr9 19524450 19524970 -104551202 - SRV_MM-int LTR ERVK -4566 3651 2799 3 733 2992 20 43 0 chr9 19525012 19525364 -104550808 - IAPLTR1_Mm LTR ERVK 0 367 1 3 733 26172 18 1 1 chr9 19525364 19528319 -104547853 - IAPEz-int LTR ERVK 0 6481 3525 3 733 914 81 24 0 chr9 19528319 19528442 -104547730 - IAPEz-int LTR ERVK -2770 4910 4785 3 733 1763 123 4 15 chr9 19528439 19528704 -104547468 - IAPEz-int LTR ERVK -5183 2497 2236 3 733 433 82 0 32 chr9 19528693 19528756 -104547416 - IAPEz-int LTR ERVK -5062 1419 1359 3 733 3402 81 13 14 chr9 19528756 19529485 -104546687 - IAPEz-int LTR ERVK -5819 662 8 3 91 2992 20 43 0 chr9 19529485 19529837 -104546335 - IAPLTR1_Mm LTR ERVK 0 367 1 3 734 4941 284 41 23 chr9 19529908 19532002 -104544170 - ETnERV-int LTR ERVK -3575 2592 589 3 734 8130 35 3 2 chr9 19532048 19533025 -104543147 - L1Md_F2 LINE L1 -14 6568 5591 3 734 2064 211 35 65 chr9 19533027 19533599 -104542573 - ETnERV-int LTR ERVK -2758 556 2 3 734 2053 158 93 5 chr9 19533600 19533976 -104542196 - RLTR9E LTR ERVK 0 409 1 3 734 1173 18 37 0 chr9 19534055 19534219 -104541953 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 3 734 305 301 46 125 chr9 19534378 19534705 -104541467 + RMER10A LTR ERVL 130 430 -12 4 734 564 0 40 0 chr9 19535430 19535506 -104540666 + (GTTTG)n Simple_repeat Simple_repeat 2 80 0 4 734 1059 90 0 7 chr9 19535506 19535644 -104540528 - B1_Mus2 SINE Alu -8 139 3 4 734 208 143 0 0 chr9 19536268 19536303 -104539869 + (T)n Simple_repeat Simple_repeat 1 35 0 4 734 22 0 0 0 chr9 19536507 19536529 -104539643 + AT_rich Low_complexity Low_complexity 1 22 0 4 734 1628 275 159 77 chr9 19536894 19537796 -104538376 + RMER17B LTR ERVK 1 851 -107 4 734 576 151 20 27 chr9 19538048 19538198 -104537974 + Lx9 LINE L1 7495 7643 -1 4 734 466 225 146 5 chr9 19539590 19539782 -104536390 - Lx9 LINE L1 0 7644 7426 4 734 352 351 72 0 chr9 19540254 19540365 -104535807 + B4A SINE B4 6 124 -168 4 734 629 241 0 14 chr9 19540579 19540718 -104535454 - B3A SINE B2 -59 139 3 4 734 371 214 24 8 chr9 19541315 19541442 -104534730 + CT-rich Low_complexity Low_complexity 2 130 0 5 734 585 0 0 0 chr9 19541486 19541551 -104534621 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 5 734 635 227 103 5 chr9 19543116 19543311 -104532861 + RCHARR1 DNA MER1_type 308 521 -453 5 734 388 313 65 46 chr9 19543312 19543573 -104532599 + Lx8 LINE L1 7190 7455 -18 5 734 444 332 30 23 chr9 19543595 19543881 -104532291 + RCHARR1 DNA MER1_type 524 812 -162 5 734 3892 79 4 0 chr9 19543881 19544400 -104531772 - L1Md_F2 LINE L1 -3 6579 6059 5 734 444 332 30 23 chr9 19544400 19544412 -104531760 + RCHARR1 DNA MER1_type 813 824 -150 5 734 21134 100 7 13 chr9 19544413 19548212 -104527960 - L1Md_A LINE L1 -1689 4194 422 5 734 433 314 71 9 chr9 19548213 19548423 -104527749 - SRV_MM-int LTR ERVK -3232 2935 2798 5 734 390 366 18 18 chr9 19548465 19548738 -104527434 - SRV_MM-int LTR ERVK -5145 3072 2800 5 734 14642 94 4 3 chr9 19548738 19551252 -104524920 + L1Md_F2 LINE L1 3820 6338 -244 5 734 3932 187 39 33 chr9 19551252 19552102 -104524070 - RLTR13A LTR ERVK 0 855 1 5 734 1774 92 0 12 chr9 19552102 19552355 -104523817 + L1Md_F2 LINE L1 6333 6582 0 5 734 336 309 5 22 chr9 19552368 19552553 -104523619 + L1_Mur3 LINE L1 4629 4810 -1070 5 734 665 358 45 15 chr9 19552756 19553202 -104522970 - Lx8 LINE L1 -972 6724 6260 6 734 655 280 93 11 chr9 19553226 19553601 -104522571 - L1_Mur3 LINE L1 -422 5458 5053 6 734 247 274 63 0 chr9 19553867 19553962 -104522210 - Lx7 LINE L1 -334 7362 7262 6 734 733 278 49 165 chr9 19554026 19554305 -104521867 - ORR1C2 LTR MaLR -3 381 156 6 734 612 70 0 0 chr9 19554305 19554391 -104521781 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 734 733 278 49 165 chr9 19554391 19554542 -104521630 - ORR1C2 LTR MaLR -229 155 1 6 734 3653 260 97 60 chr9 19554547 19556566 -104519606 - L1_Mur3 LINE L1 -1564 4316 2223 6 734 7938 143 32 3 chr9 19556581 19557989 -104518183 + Lx2 LINE L1 5551 6996 -1 6 734 602 285 22 0 chr9 19558072 19558209 -104517963 + B1_Mur1 SINE Alu 10 149 0 6 734 180 0 0 0 chr9 19558236 19558256 -104517916 + (A)n Simple_repeat Simple_repeat 1 20 0 6 734 357 280 21 0 chr9 19558361 19558454 -104517718 + BC1_Mm scRNA scRNA 1 95 -57 6 734 258 263 0 0 chr9 19558711 19558768 -104517404 + Lx8 LINE L1 7267 7323 -150 6 734 1232 154 5 5 chr9 19558770 19558985 -104517187 + Lx LINE L1 6437 6651 -3 7 734 180 0 0 0 chr9 19559017 19559037 -104517135 + (T)n Simple_repeat Simple_repeat 1 20 0 7 734 1215 48 0 0 chr9 19559037 19559183 -104516989 - B1_Mus2 SINE Alu 0 147 2 7 734 450 0 0 0 chr9 19560630 19560680 -104515492 + (TATG)n Simple_repeat Simple_repeat 2 51 0 7 734 389 198 103 0 chr9 19561905 19562021 -104514151 + Lx9 LINE L1 7465 7592 -52 7 734 1549 192 84 0 chr9 19562008 19562352 -104513820 + L1Md_F LINE L1 479 851 -5668 7 734 26312 74 6 77 chr9 19562350 19564751 -104511421 - L1Md_F2 LINE L1 -4 6578 4169 7 734 2951 55 2 39 chr9 19564751 19565167 -104511005 + RLTR10A LTR ERVK 1 401 -10 7 734 26312 74 6 77 chr9 19565167 19567545 -104508627 - L1Md_F2 LINE L1 -4 4168 1780 7 734 1678 141 24 49 chr9 19567553 19567881 -104508291 - IAPLTR2b LTR ERVK -7 320 1 7 734 5853 145 16 18 chr9 19567881 19568989 -104507183 - IAPEz-int LTR ERVK -351 7329 5525 7 734 30450 62 2 0 chr9 19569704 19573633 -104502539 - IAPEz-int LTR ERVK -1570 4911 975 7 734 270 195 13 0 chr9 19573747 19573824 -104502348 - IAPEz-int LTR ERVK -6747 933 856 7 734 966 303 38 16 chr9 19574006 19574449 -104501723 - IAPEz-int LTR ERVK -5916 905 453 7 734 460 174 33 50 chr9 19574684 19574805 -104501367 - IAPEz-int LTR ERVK -6702 119 1 7 734 1706 138 24 49 chr9 19574813 19575141 -104501031 - IAPLTR2b LTR ERVK -7 320 1 7 734 4124 130 17 21 chr9 19575141 19576497 -104499675 - L1Md_A LINE L1 -4098 1785 446 7 734 314 271 89 16 chr9 19576518 19576642 -104499530 - SRV_MM-int LTR ERVK -3236 2931 2799 8 734 1377 320 34 25 chr9 19576837 19577633 -104498539 - SRV_MM-int LTR ERVK -3575 2592 1790 8 734 6922 219 26 24 chr9 19577876 19579539 -104496633 - ETnERV-int LTR ERVK -3403 2405 2 8 734 2049 169 93 5 chr9 19579540 19579916 -104496256 - RLTR9E LTR ERVK 0 409 1 8 734 1132 14 37 14 chr9 19580005 19580222 -104495950 + (TCTA)n Simple_repeat Simple_repeat 1 222 0 8 734 300 278 42 143 chr9 19580385 19580692 -104495480 + RMER10A LTR ERVL 130 405 -37 8 734 350 218 49 157 chr9 19581389 19581412 -104494760 - B4A SINE B4 -60 232 216 8 734 243 0 0 0 chr9 19581412 19581439 -104494733 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 8 734 914 94 0 0 chr9 19581439 19581566 -104494606 - B1_Mus1 SINE Alu -9 139 13 8 734 350 218 49 157 chr9 19581566 19581600 -104494572 - B4A SINE B4 -77 215 68 8 734 22 0 0 0 chr9 19582426 19582448 -104493724 + AT_rich Low_complexity Low_complexity 1 22 0 8 734 477 0 0 0 chr9 19582774 19582827 -104493345 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 734 1874 262 122 103 chr9 19582857 19583752 -104492420 + RMER17B LTR ERVK 1 786 -74 8 734 585 153 49 0 chr9 19584017 19584161 -104492011 + Lx9 LINE L1 7487 7637 -7 9 734 423 254 140 5 chr9 19585581 19585795 -104490377 - Lx9 LINE L1 0 7644 7402 9 734 314 372 66 8 chr9 19586260 19586382 -104489790 + B4A SINE B4 6 134 -158 9 734 585 248 0 14 chr9 19586580 19586719 -104489453 - B3A SINE B2 -59 139 3 9 734 796 69 8 8 chr9 19587311 19587428 -104488744 + (TTCTC)n Simple_repeat Simple_repeat 5 121 0 9 734 590 208 38 6 chr9 19588833 19588993 -104487179 + RCHARR1 DNA MER1_type 357 521 -453 9 734 264 333 79 48 chr9 19589009 19589261 -104486911 + Lx8 LINE L1 7205 7464 -9 9 734 377 327 35 16 chr9 19589277 19589532 -104486640 + RCHARR1 DNA MER1_type 524 783 -191 9 734 409 259 56 7 chr9 19589753 19589897 -104486275 - L1M2 LINE L1 -509 5788 5638 9 734 414 277 83 83 chr9 19590187 19590439 -104485733 - RMER2 LTR ERV1 -27 540 289 9 734 247 25 0 48 chr9 19590679 19590721 -104485451 + (CAA)n Simple_repeat Simple_repeat 2 41 0 9 734 464 282 7 104 chr9 19590736 19591025 -104485147 + L1_Mur3 LINE L1 1509 1769 -4111 1 734 1038 274 18 3 chr9 19591017 19591408 -104484764 + L1_Mur3 LINE L1 3950 4385 -1761 1 734 4949 77 3 1 chr9 19591404 19592103 -104484069 - L1_Mm LINE L1 -653 5230 4531 1 734 1102 149 45 0 chr9 19592075 19592296 -104483876 - L1_Mm LINE L1 -1976 3907 3677 1 734 336 390 55 6 chr9 19592362 19592545 -104483627 - B3A SINE B2 -3 195 4 1 734 22 35 0 0 chr9 19592603 19592632 -104483540 + AT_rich Low_complexity Low_complexity 1 29 0 1 734 1905 268 28 3 chr9 19592633 19593202 -104482970 - Lx3C LINE L1 -3 6973 6391 1 734 3361 217 29 16 chr9 19593211 19593982 -104482190 - Lx2B LINE L1 -10 6990 6210 1 734 2354 311 59 42 chr9 19593993 19595596 -104480576 - ETnERV-int LTR ERVK -2942 3225 1597 1 734 6760 214 36 36 chr9 19595667 19596453 -104479719 - ETnERV-int LTR ERVK -1656 1658 863 1 734 1119 89 0 0 chr9 19596453 19596599 -104479573 - B1_Mus2 SINE Alu 0 147 2 1 734 6760 214 36 36 chr9 19596599 19597469 -104478703 - ETnERV-int LTR ERVK -2452 862 2 1 734 829 204 30 20 chr9 19597470 19597670 -104478502 - RLTR9E LTR ERVK 0 409 208 1 734 855 144 43 0 chr9 19597624 19597763 -104478409 + MT2C_Mm LTR ERVL 274 418 -57 1 734 15797 170 136 11 chr9 19597795 19602543 -104473629 + L1Md_F2 LINE L1 232 5588 -298 1 734 7864 53 3 6 chr9 19602544 19603542 -104472630 + L1Md_F2 LINE L1 5587 6581 -1 1 734 1693 130 0 4 chr9 19603568 19603823 -104472349 - RLTR9E LTR ERVK -155 254 1 1 734 456 67 0 0 chr9 19603904 19603964 -104472208 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1 734 374 293 40 125 chr9 19604123 19604451 -104471721 + RMER10A LTR ERVL 130 429 -13 1 734 261 0 0 0 chr9 19605198 19605227 -104470945 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 1 734 968 130 0 0 chr9 19605227 19605365 -104470807 - B1_Mus1 SINE Alu -8 140 3 1 734 5147 89 78 99 chr9 19605697 19606609 -104469563 + RLTR13B1 LTR ERVK 1 893 0 1 734 1786 279 135 76 chr9 19607514 19608421 -104467751 + RMER17B LTR ERVK 1 905 -53 1 734 547 166 41 0 chr9 19608674 19608819 -104467353 + Lx9 LINE L1 7487 7637 -7 1 734 440 222 14 0 chr9 19610244 19610388 -104465784 - Lx9 LINE L1 0 7644 7499 1 734 290 372 66 8 chr9 19610921 19611043 -104465129 + B4A SINE B4 6 134 -158 1 734 609 263 0 14 chr9 19611249 19611388 -104464784 - B3A SINE B2 -59 139 3 1 734 324 48 0 0 chr9 19611964 19612006 -104464166 + (TCTTG)n Simple_repeat Simple_repeat 1 42 0 1 734 1163 92 11 0 chr9 19612006 19612180 -104463992 + (TTCTC)n Simple_repeat Simple_repeat 2 177 0 1 734 201 147 0 0 chr9 19612183 19612217 -104463955 + (TTCCC)n Simple_repeat Simple_repeat 2 35 0 1 734 1117 96 11 0 chr9 19612217 19612395 -104463777 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 734 978 304 114 11 chr9 19613737 19614177 -104461995 + RCHARR1 DNA MER1_type 37 521 -453 1 734 388 314 71 40 chr9 19614193 19614445 -104461727 + Lx8 LINE L1 7205 7464 -9 1 734 566 299 35 25 chr9 19614461 19614746 -104461426 + RCHARR1 DNA MER1_type 524 811 -163 1 734 366 80 0 0 chr9 19614930 19614980 -104461192 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 734 354 302 77 5 chr9 19614981 19615177 -104460995 - L1M2 LINE L1 -520 5777 5568 1 734 412 281 80 80 chr9 19615401 19615652 -104460520 - RMER2 LTR ERV1 -27 540 290 1 734 323 114 0 28 chr9 19615874 19615946 -104460226 + (CAAAAA)n Simple_repeat Simple_repeat 2 71 0 1 734 440 287 11 88 chr9 19615970 19616253 -104459919 + L1_Mur3 LINE L1 1509 1769 -4111 1 734 1098 274 20 4 chr9 19616245 19616636 -104459536 + L1_Mur3 LINE L1 3950 4385 -1761 1 734 4389 85 1 139 chr9 19616632 19617453 -104458719 - L1_Mm LINE L1 -653 5230 4523 1 734 1223 124 5 0 chr9 19617441 19617635 -104458537 - L1_Mm LINE L1 -2009 3874 3680 1 734 354 349 57 6 chr9 19617711 19617887 -104458285 - B3A SINE B2 -10 188 4 1 734 2235 258 50 5 chr9 19617957 19618541 -104457631 - Lx2B LINE L1 -3 6997 6388 1 734 3772 221 9 3 chr9 19618549 19619326 -104456846 - Lx2B LINE L1 -9 6991 6210 1 734 3966 292 36 28 chr9 19619337 19621767 -104454405 - ETnERV-int LTR ERVK -2942 3225 906 1 734 283 146 0 0 chr9 19621768 19621823 -104454349 + Lx9 LINE L1 7583 7637 -7 1 734 2023 241 22 4 chr9 19622436 19622898 -104453274 - Lx2B LINE L1 -143 6857 6388 1 734 7953 205 21 7 chr9 19622903 19624237 -104451935 - Lx2B LINE L1 -6 6994 5633 1 734 6271 95 20 50 chr9 19624237 19625246 -104450926 - RLTR13A3 LTR ERVK 0 978 1 1 734 7953 260 37 107 chr9 19625246 19625605 -104450567 - Lx2B LINE L1 -248 5632 5277 1 734 332 22 0 22 chr9 19625605 19625651 -104450521 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 1 734 7953 260 37 107 chr9 19625651 19626089 -104450083 - Lx2B LINE L1 -604 5276 4813 1 734 2050 163 35 0 chr9 19626089 19626457 -104449715 - Lx3B LINE L1 -6 6967 6587 1 734 7953 260 37 107 chr9 19626457 19627471 -104448701 - Lx2B LINE L1 -1068 4812 3903 1 734 207 0 0 0 chr9 19627471 19627494 -104448678 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 734 7953 260 37 107 chr9 19627494 19628336 -104447836 - Lx2B LINE L1 -1978 3902 3314 1 734 5009 94 0 0 chr9 19628336 19629020 -104447152 - L1_Mus1 LINE L1 0 6567 5884 1 734 12945 138 43 6 chr9 19629020 19631665 -104444507 - L1Md_F LINE L1 -2565 3318 576 1 734 457 181 103 0 chr9 19631652 19631768 -104444404 - Lx LINE L1 -52 7592 7465 1 734 552 30 0 0 chr9 19632992 19633058 -104443114 + (CATA)n Simple_repeat Simple_repeat 2 67 0 1 734 1223 150 9 5 chr9 19634511 19634725 -104441447 - Lx LINE L1 -3 6651 6437 1 734 263 288 0 0 chr9 19634727 19634793 -104441379 - Lx8 LINE L1 -150 7323 7258 1 734 370 269 21 0 chr9 19635040 19635133 -104441039 - BC1_Mm scRNA scRNA -57 95 1 1 734 592 292 22 0 chr9 19635279 19635416 -104440756 - B1_Mur1 SINE Alu 0 149 10 1 734 8152 156 30 2 chr9 19635499 19636908 -104439264 - Lx2 LINE L1 -1 6996 5551 1 734 3204 262 97 81 chr9 19636923 19638983 -104437189 + L1_Mur3 LINE L1 2223 4316 -1564 1 734 949 258 52 109 chr9 19638988 19639139 -104437033 + ORR1C2 LTR MaLR 1 155 -229 1 734 1041 106 0 0 chr9 19639139 19639319 -104436853 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 734 949 258 52 109 chr9 19639319 19639571 -104436601 + ORR1C2 LTR MaLR 156 381 -3 1 734 253 309 67 12 chr9 19639613 19639777 -104436395 + Lx7 LINE L1 7240 7412 -284 1 734 615 268 107 21 chr9 19639985 19640359 -104435813 + L1_Mur3 LINE L1 5053 5458 -422 1 734 770 329 53 13 chr9 19640383 19640826 -104435346 + Lx8 LINE L1 6260 6724 -972 1 734 334 294 86 16 chr9 19641021 19641208 -104434964 - L1_Mur3 LINE L1 -1052 4828 4629 1 734 321 26 0 0 chr9 19641215 19641253 -104434919 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 734 32708 105 24 17 chr9 19641267 19647560 -104428612 - L1Md_F2 LINE L1 -1 6581 240 1 734 1281 266 107 29 chr9 19647567 19648229 -104427943 - L1_Mur3 LINE L1 -1217 4663 3950 1 734 437 266 111 72 chr9 19648221 19648626 -104427546 - L1_Mur3 LINE L1 -4111 1769 1349 1 734 338 244 4 34 chr9 19648819 19648930 -104427242 + L1M2 LINE L1 5681 5789 -394 1 734 291 216 43 54 chr9 19649263 19649356 -104426816 - RCHARR1 DNA MER1_type -367 607 516 1 734 268 354 63 38 chr9 19649361 19649599 -104426573 - Lx8 LINE L1 -11 7462 7219 1 734 879 331 78 22 chr9 19649599 19650087 -104426085 - RCHARR1 DNA MER1_type -423 551 37 1 734 513 99 0 0 chr9 19651360 19651441 -104424731 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 1 734 243 103 0 0 chr9 19651680 19651719 -104424453 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 734 220 311 13 13 chr9 19652605 19652680 -104423492 + PB1D10 SINE Alu 42 116 -1 1 734 23 33 0 0 chr9 19652704 19652734 -104423438 + AT_rich Low_complexity Low_complexity 1 30 0 1 734 468 362 69 30 chr9 19653327 19653558 -104422614 - B4A SINE B4 -6 286 47 1 734 215 361 48 0 chr9 19654757 19654840 -104421332 - PB1D7 SINE Alu -17 103 17 1 734 241 276 20 10 chr9 19655135 19655234 -104420938 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 1 734 763 217 32 2 chr9 19655489 19655676 -104420496 + MurERV4_19-int LTR ERVK 1065 1291 -1886 1 734 1824 207 6 0 chr9 19655672 19656010 -104420162 + MurERV4_19-int LTR ERVK 1488 1827 -3953 1 734 17843 162 56 37 chr9 19656008 19658845 -104417327 + MurERV4_19-int LTR ERVK 1992 4883 -897 1 734 180 0 0 0 chr9 19658845 19658865 -104417307 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 734 17843 162 56 37 chr9 19658865 19659747 -104416425 + MurERV4_19-int LTR ERVK 4884 5779 -1 1 734 885 209 115 14 chr9 19659764 19659973 -104416199 + RMER19B LTR ERVK 305 534 -368 1 734 834 228 21 5 chr9 19659987 19660177 -104415995 + RMER19C LTR ERVK 419 611 0 1 91 13802 155 164 9 chr9 19660638 19665893 -104410279 - L1_Mus2 LINE L1 0 6566 397 1 735 12243 146 4 1 chr9 19665899 19666460 -104409712 - L1Md_F LINE L1 -585 5298 4737 1 735 567 29 0 0 chr9 19666460 19666529 -104409643 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 1 735 19957 138 8 5 chr9 19666529 19669387 -104406785 - L1Md_F LINE L1 -1147 4736 1870 1 735 2565 52 15 0 chr9 19669388 19669714 -104406458 - IAPEY_LTR LTR ERVK 0 385 55 1 735 21306 56 3 6 chr9 19669714 19672432 -104403740 - IAPEy-int LTR ERVK 0 7513 4804 1 735 2770 140 11 24 chr9 19672432 19673111 -104403061 - IAPEy-int LTR ERVK -6455 1058 1 1 735 3135 55 3 0 chr9 19673111 19673495 -104402677 - IAPEY_LTR LTR ERVK 0 385 1 1 735 3219 125 11 147 chr9 19673495 19673862 -104402310 - L1Md_F LINE L1 -4024 1859 1580 1 735 1103 89 0 0 chr9 19673862 19674008 -104402164 - B1_Mm SINE Alu 0 147 2 1 735 3219 125 11 147 chr9 19674008 19674100 -104402072 - L1Md_F LINE L1 -4304 1579 1511 1 735 5116 36 2 0 chr9 19674100 19674712 -104401460 - L1Md_A LINE L1 -1 6581 5969 1 735 3219 179 31 99 chr9 19674712 19675864 -104400308 - L1Md_F LINE L1 -4373 1510 387 1 735 247 320 27 65 chr9 19676148 19676332 -104399840 - RMER10A LTR ERVL -144 298 122 1 735 219 114 0 0 chr9 19676505 19676540 -104399632 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1 735 5710 242 27 8 chr9 19677318 19679197 -104396975 - Lx5 LINE L1 -3 7047 5126 1 735 2083 215 52 18 chr9 19679231 19679589 -104396583 - Lx5 LINE L1 -2704 3176 2803 1 735 207 0 0 0 chr9 19679589 19679612 -104396560 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 735 2083 215 52 18 chr9 19679612 19679826 -104396346 - Lx5 LINE L1 -3078 2802 2584 1 735 1242 106 33 0 chr9 19680168 19680348 -104395824 - B2_Mm2 SINE B2 -9 186 1 1 735 70 54 0 0 chr9 19681375 19681487 -104394685 + AT_rich Low_complexity Low_complexity 1 112 0 1 735 8052 188 19 12 chr9 19681501 19683235 -104392937 - Lx3B LINE L1 -1059 5914 4166 1 735 262 235 110 61 chr9 19683240 19683403 -104392769 + Lx8 LINE L1 6722 6892 -581 1 735 427 278 68 1 chr9 19683633 19683881 -104392291 + L1_Mur3 LINE L1 5191 5490 -688 1 735 1112 347 54 32 chr9 19683975 19684714 -104391458 + Lx7 LINE L1 6342 7096 -600 1 735 2047 278 53 34 chr9 19684802 19685094 -104391078 - L1_Mur3 LINE L1 -936 4947 4673 1 735 585 0 0 0 chr9 19685094 19685159 -104391013 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 1 735 2047 277 55 31 chr9 19685159 19685830 -104390342 - L1_Mur3 LINE L1 -1208 4672 3961 1 735 251 313 72 41 chr9 19685834 19686144 -104390028 - L1_Mur3 LINE L1 -4111 1766 1449 1 735 215 163 0 58 chr9 19686163 19686215 -104389957 + T-rich Low_complexity Low_complexity 4 52 0 1 735 556 316 35 29 chr9 19686740 19687056 -104389116 - RCHARR1 DNA MER1_type -138 836 519 1 735 902 328 101 2 chr9 19687355 19687771 -104388401 - RCHARR1 DNA MER1_type -480 494 38 1 735 248 308 44 0 chr9 19689070 19689161 -104387011 + GA-rich Low_complexity Low_complexity 4 98 0 1 735 450 116 20 31 chr9 19689162 19689260 -104386912 + A-rich Low_complexity Low_complexity 3 99 0 1 735 664 304 49 15 chr9 19689875 19690079 -104386093 + B3A SINE B2 6 216 0 1 735 44 0 0 0 chr9 19690084 19690128 -104386044 + AT_rich Low_complexity Low_complexity 1 44 0 1 735 34 42 0 0 chr9 19690594 19690642 -104385530 + AT_rich Low_complexity Low_complexity 1 48 0 1 735 406 372 137 35 chr9 19690759 19691015 -104385157 - B4A SINE B4 -1 291 10 1 735 690 226 104 0 chr9 19691475 19691696 -104384476 + Lx9 LINE L1 7401 7644 0 2 735 252 342 78 17 chr9 19691869 19691985 -104384187 - B1F1 SINE Alu -22 127 5 2 735 4189 138 56 1 chr9 19693395 19694057 -104382115 + Lx2A1 LINE L1 6302 6999 -9 2 735 24 0 0 0 chr9 19694546 19694570 -104381602 + AT_rich Low_complexity Low_complexity 1 24 0 2 735 27570 85 1 5 chr9 19694781 19699357 -104376815 + L1Md_F LINE L1 515 5074 -809 2 735 2105 78 11 0 chr9 19699349 19699630 -104376542 + L1Md_F2 LINE L1 6038 6321 -261 2 735 1537 96 0 14 chr9 19699626 19699848 -104376324 - L1Md_F2 LINE L1 -144 6438 6220 2 735 614 51 0 0 chr9 19699846 19699925 -104376247 + L1Md_F2 LINE L1 5902 5980 -602 2 735 1766 55 4 17 chr9 19699941 19700180 -104375992 + L1Md_F2 LINE L1 6344 6579 -3 2 735 214 143 41 0 chr9 19700323 19700372 -104375800 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 735 368 296 26 31 chr9 19700583 19700775 -104375397 - L1M2 LINE L1 -476 5824 5634 2 735 426 94 0 0 chr9 19700797 19700861 -104375311 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 735 504 100 0 0 chr9 19700861 19700941 -104375231 + (GA)n Simple_repeat Simple_repeat 2 81 0 2 735 2535 58 12 0 chr9 19701511 19701838 -104374334 + IAPEY_LTR LTR ERVK 55 385 0 2 735 6543 123 18 13 chr9 19701838 19702891 -104373281 + IAPEy-int LTR ERVK 1 1058 -6455 2 735 19291 63 3 4 chr9 19702891 19705374 -104370798 + IAPEy-int LTR ERVK 4804 7284 -229 2 735 1882 109 60 52 chr9 19705387 19705756 -104370416 + IAPLTR2_Mm LTR ERVK 104 475 0 2 735 3389 74 4 44 chr9 19705756 19706601 -104369571 + IAPEz-int LTR ERVK 8 662 -5819 2 735 473 62 0 30 chr9 19706601 19706667 -104369505 + IAPEz-int LTR ERVK 1359 1422 -5059 2 735 1763 118 0 0 chr9 19706669 19706915 -104369257 + IAPEz-int LTR ERVK 2252 2497 -5183 2 735 904 89 24 0 chr9 19706912 19707035 -104369137 + IAPEz-int LTR ERVK 4785 4910 -2770 2 735 26183 18 3 0 chr9 19707035 19709982 -104366190 + IAPEz-int LTR ERVK 3525 6481 0 2 735 2692 110 42 40 chr9 19709982 19710456 -104365716 + IAPLTR2_Mm LTR ERVK 1 475 0 2 735 1852 60 13 0 chr9 19710456 19710690 -104365482 + IAPEY3-int LTR ERVK 7444 7680 0 2 735 2567 49 12 3 chr9 19710690 19711018 -104365154 + IAPEY_LTR LTR ERVK 55 385 0 2 735 250 325 49 0 chr9 19711568 19711691 -104364481 + L1_Rod LINE L1 2156 2284 -3563 2 735 26 74 0 0 chr9 19712231 19712285 -104363887 + AT_rich Low_complexity Low_complexity 1 54 0 2 735 268 333 45 30 chr9 19712357 19712555 -104363617 + L1M2 LINE L1 2525 2725 -3418 2 735 439 363 15 35 chr9 19712955 19713152 -104363020 + B3 SINE B2 16 208 -8 2 735 608 183 0 0 chr9 19713233 19713353 -104362819 - Lx LINE L1 -7 6647 6528 2 735 33 43 0 0 chr9 19713558 19713605 -104362567 + AT_rich Low_complexity Low_complexity 1 47 0 2 735 227 305 35 40 chr9 19713665 19713863 -104362309 + Lx9 LINE L1 5918 6114 -1530 2 735 1172 289 160 6 chr9 19713938 19714572 -104361600 + Lx9 LINE L1 6322 7053 -591 2 735 2043 297 100 20 chr9 19714618 19715547 -104360625 - Lx7 LINE L1 -950 6746 5744 2 735 1699 186 199 16 chr9 19715661 19716154 -104360018 + RLTR26 LTR ERVK 60 642 0 2 735 1074 265 29 29 chr9 19716154 19716496 -104359676 - Lx7 LINE L1 -136 5744 5403 2 735 279 267 67 33 chr9 19716511 19716631 -104359541 - L1_Mur3 LINE L1 -3809 2071 1948 2 735 5186 69 1 6 chr9 19716662 19717344 -104358828 - L1Md_F2 LINE L1 -3 6579 5901 2 735 4845 44 0 2 chr9 19717344 19717934 -104358238 + L1Md_F2 LINE L1 5295 5883 0 2 735 271 316 162 0 chr9 19717932 19718068 -104358104 - L1_Mur3 LINE L1 -3956 1924 1767 2 735 25 31 0 0 chr9 19718114 19718146 -104358026 + AT_rich Low_complexity Low_complexity 1 32 0 2 735 968 24 0 8 chr9 19718640 19718764 -104357408 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 2 735 5100 101 3 5 chr9 19718866 19719604 -104356568 - L1_Mus4 LINE L1 0 6636 5901 2 735 281 329 0 13 chr9 19719657 19719734 -104356438 - ID4_ SINE ID -1 82 7 2 735 227 287 45 22 chr9 19719785 19719874 -104356298 - MTEa LTR MaLR -1 378 288 2 735 230 313 44 30 chr9 19720018 19720153 -104356019 - L1M2 LINE L1 -3597 2546 2410 2 735 24 32 0 0 chr9 19720447 19720478 -104355694 + AT_rich Low_complexity Low_complexity 1 31 0 2 735 3966 59 4 2 chr9 19720490 19720999 -104355173 + L1_Mus1 LINE L1 6057 6566 -1 2 735 26 74 0 0 chr9 19721087 19721141 -104355031 + AT_rich Low_complexity Low_complexity 1 54 0 2 735 24 53 0 0 chr9 19723672 19723710 -104352462 + AT_rich Low_complexity Low_complexity 1 38 0 2 735 357 125 0 0 chr9 19724360 19724416 -104351756 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 735 411 336 37 73 chr9 19725890 19726054 -104350118 + RSINE1 SINE B4 8 165 0 2 735 33 0 0 0 chr9 19726057 19726090 -104350082 + AT_rich Low_complexity Low_complexity 1 33 0 2 735 23 0 0 0 chr9 19726683 19726706 -104349466 + AT_rich Low_complexity Low_complexity 1 23 0 2 735 22 0 0 0 chr9 19726831 19726853 -104349319 + AT_rich Low_complexity Low_complexity 1 22 0 2 735 3509 191 102 12 chr9 19727019 19727827 -104348345 - Lx4B LINE L1 0 7058 6179 2 735 4368 182 18 6 chr9 19729309 19730127 -104346045 + Lx LINE L1 5826 6653 -1 2 735 5606 127 141 10 chr9 19730296 19732258 -104343914 + L1_Mur1 LINE L1 104 2336 -3550 2 735 295 73 0 0 chr9 19732767 19732808 -104343364 + L1_Mur1 LINE L1 2322 2362 -3524 2 735 605 270 118 42 chr9 19732817 19733149 -104343023 - RLTR9A LTR ERVK -8 360 4 2 735 3474 52 11 24 chr9 19733183 19733634 -104342538 + L1_Mus2 LINE L1 6121 6565 -1 2 735 291 324 6 70 chr9 19733714 19733870 -104342302 - ETnERV2-int LTR ERVK -20 6522 6377 2 735 184 147 118 0 chr9 19734093 19734127 -104342045 - MIRb SINE MIR -184 84 47 2 735 678 315 45 43 chr9 19734130 19734644 -104341528 - RLTR6-int LTR ERV1 -257 7521 7007 2 735 9186 229 26 8 chr9 19735743 19736100 -104340072 - ETnERV2-int LTR ERVK -1207 6199 5833 2 735 621 0 0 0 chr9 19736100 19736169 -104340003 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 2 735 9186 269 38 20 chr9 19736169 19739304 -104336868 - ETnERV2-int LTR ERVK -1574 5832 1845 2 735 360 363 0 6 chr9 19739328 19739486 -104336686 - ETnERV2-int LTR ERVK -1790 1524 1368 2 735 1466 338 7 2 chr9 19739515 19740073 -104336099 - ETnERV2-int LTR ERVK -2011 1303 743 2 735 660 332 6 35 chr9 19740188 19740534 -104335638 - ETnERV2-int LTR ERVK -2651 663 328 2 735 612 282 99 57 chr9 19740808 19741161 -104335011 - RLTR9A LTR ERVK 0 368 1 2 735 21 36 0 0 chr9 19742004 19742032 -104334140 + AT_rich Low_complexity Low_complexity 1 28 0 2 735 636 264 55 71 chr9 19742176 19742295 -104333877 - Lx9 LINE L1 -771 6873 6745 2 735 888 76 0 8 chr9 19742295 19742427 -104333745 - Lx LINE L1 -6 6648 6518 2 735 636 264 55 71 chr9 19742427 19742560 -104333612 - Lx9 LINE L1 -900 6744 6625 2 735 1254 257 35 28 chr9 19742558 19742954 -104333218 + Lx9 LINE L1 6873 7271 -373 2 735 3774 28 0 0 chr9 19742951 19743418 -104332754 + L1Md_T LINE L1 5120 5586 -297 2 735 8531 31 1 0 chr9 19743418 19744413 -104331759 + L1Md_T LINE L1 5587 6582 0 2 735 569 262 8 15 chr9 19744455 19744587 -104331585 - RMER12 LTR ERVK -1129 193 63 2 735 405 325 34 21 chr9 19744591 19744827 -104331345 - RCHARR1 DNA MER1_type -219 755 517 2 735 249 287 32 11 chr9 19744915 19745010 -104331162 - Lx8 LINE L1 -141 7332 7236 2 735 563 353 113 0 chr9 19745054 19745151 -104331021 - RCHARR1 DNA MER1_type -454 520 421 2 735 3238 67 5 0 chr9 19745151 19745571 -104330601 + L1_Mus1 LINE L1 6145 6566 -1 2 735 563 353 113 0 chr9 19745571 19745906 -104330266 - RCHARR1 DNA MER1_type -554 420 40 2 735 282 194 0 0 chr9 19747198 19747265 -104328907 + GA-rich Low_complexity Low_complexity 3 69 0 2 735 1167 81 0 0 chr9 19747281 19747441 -104328731 + (GGGGA)n Simple_repeat Simple_repeat 2 161 0 2 735 396 324 70 18 chr9 19747976 19748158 -104328014 + B3A SINE B2 6 185 -10 2 735 341 294 10 52 chr9 19749977 19750074 -104326098 + PB1D10 SINE Alu 24 116 -1 2 735 35 54 0 0 chr9 19750514 19750570 -104325602 + AT_rich Low_complexity Low_complexity 1 56 0 2 735 637 346 80 15 chr9 19750684 19750948 -104325224 - B4A SINE B4 -11 281 1 2 735 419 251 96 18 chr9 19751393 19751612 -104324560 + Lx9 LINE L1 7401 7636 -8 2 735 486 0 0 0 chr9 19751688 19751742 -104324430 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 735 233 355 75 0 chr9 19751839 19751940 -104324232 - B1_Mur2 SINE Alu -26 123 13 2 735 258 32 0 0 chr9 19751977 19752008 -104324164 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2 735 357 206 0 10 chr9 19753033 19753136 -104323036 - Lx9 LINE L1 0 7644 7543 2 735 3442 55 2 144 chr9 19755685 19756239 -104319933 - MT2C_Mm LTR ERVL 0 475 1 2 735 302 0 0 0 chr9 19756239 19756277 -104319895 - MERVL-int LTR ERVL 0 5485 5448 2 735 355 164 13 40 chr9 19756277 19756353 -104319819 - ORR1A3-int LTR MaLR -1323 640 567 2 735 24290 78 11 1 chr9 19756469 19759788 -104316384 - MERVL-int LTR ERVL -129 5356 2007 2 735 1912 109 110 59 chr9 19759788 19760179 -104315993 - IAPLTR2a LTR ERVK 0 411 1 2 735 4984 82 17 3 chr9 19760179 19760707 -104315465 - IAPEz-int LTR ERVK 0 6481 5944 2 735 3722 54 0 0 chr9 19760707 19761167 -104315005 - L1Md_T LINE L1 0 6582 6123 2 735 4984 82 17 3 chr9 19761167 19761359 -104314813 - IAPEz-int LTR ERVK -538 5943 5753 2 735 2021 183 131 73 chr9 19761359 19761932 -104314240 + RLTR6_Mm LTR ERV1 1 606 -48 2 735 58758 33 12 0 chr9 19761932 19769501 -104306671 + RLTR6-int LTR ERV1 3 7778 0 2 735 2005 171 136 76 chr9 19769501 19770052 -104306120 + RLTR6_Mm LTR ERV1 1 584 -70 2 735 796 49 0 0 chr9 19770052 19770154 -104306018 - IAPEz-int LTR ERVK -727 5754 5653 2 735 9708 103 49 43 chr9 19770149 19771940 -104304232 - IAPEz-int LTR ERVK -4781 1700 3 2 735 1927 125 91 58 chr9 19771942 19772340 -104303832 - IAPLTR2a LTR ERVK 0 411 1 2 735 12477 98 50 14 chr9 19772340 19773979 -104302193 - MERVL-int LTR ERVL -3473 2012 301 2 735 842 105 0 65 chr9 19773979 19774132 -104302040 - L1Md_F2 LINE L1 0 6582 6440 2 735 2895 30 0 0 chr9 19774134 19774473 -104301699 - L1Md_F3 LINE L1 -15 6569 6231 2 735 12477 98 50 14 chr9 19774473 19774756 -104301416 - MERVL-int LTR ERVL -5185 300 17 2 735 339 36 125 0 chr9 19774757 19774813 -104301359 - MT2C_Mm LTR ERVL -412 63 1 2 735 534 221 0 17 chr9 19775205 19775380 -104300792 + (TTTA)n Simple_repeat Simple_repeat 2 173 0 2 735 189 0 0 0 chr9 19776555 19776576 -104299596 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 735 243 0 0 0 chr9 19776576 19776602 -104299570 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 735 21 36 0 0 chr9 19777451 19777479 -104298693 + AT_rich Low_complexity Low_complexity 1 28 0 2 735 253 346 36 48 chr9 19777467 19777716 -104298456 - Lx8 LINE L1 0 7473 7228 2 735 2749 227 43 2 chr9 19777732 19778296 -104297876 - MurERV4_19-int LTR ERVK -5193 587 1 2 735 2538 191 61 40 chr9 19778296 19778948 -104297224 - RMER19A LTR ERVK 0 737 14 2 735 7234 202 18 2 chr9 19778948 19780320 -104295852 + MurERV4_19-int LTR ERVK 466 1858 -3922 2 735 2372 127 0 0 chr9 19780320 19780667 -104295505 + L1_Mur1 LINE L1 5389 5735 -151 2 735 843 86 70 0 chr9 19780667 19780795 -104295377 + L1_Mus2 LINE L1 6429 6565 -1 2 735 739 276 20 85 chr9 19780837 19781155 -104295017 + L1VL2 LINE L1 2 485 -5933 2 735 248 218 49 98 chr9 19781159 19781281 -104294891 + L1Md_F LINE L1 149 264 -6352 2 735 13127 98 11 1 chr9 19781290 19783905 -104292267 + L1_Mus1 LINE L1 3932 6565 -2 2 735 218 306 0 0 chr9 19784130 19784202 -104291970 + GA-rich Low_complexity Low_complexity 2 73 0 2 735 24 0 0 0 chr9 19784369 19784393 -104291779 + AT_rich Low_complexity Low_complexity 1 24 0 2 735 1140 61 7 0 chr9 19784445 19784592 -104291580 + B1_Mus1 SINE Alu 1 148 0 2 735 21 0 0 0 chr9 19784773 19784794 -104291378 + AT_rich Low_complexity Low_complexity 1 21 0 2 735 2634 180 61 9 chr9 19784857 19785181 -104290991 + L1Md_F LINE L1 4104 4444 -1439 2 735 732 23 0 0 chr9 19785181 19785267 -104290905 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 2 735 2634 180 61 9 chr9 19785267 19785502 -104290670 + L1Md_F LINE L1 4445 4691 -1192 2 735 1832 178 35 5 chr9 19785504 19785876 -104290296 - L1_Mur2 LINE L1 -429 5448 5066 3 735 236 208 0 0 chr9 19785873 19785926 -104290246 + L1_Mur2 LINE L1 5004 5056 -830 3 735 2717 179 34 0 chr9 19785923 19786475 -104289697 - L1_Mm LINE L1 -1241 4642 4072 3 735 11219 98 31 19 chr9 19786475 19786939 -104289233 - MusHAL1 LINE L1 -635 2077 1587 3 735 564 73 0 0 chr9 19786939 19787021 -104289151 + (TTG)n Simple_repeat Simple_repeat 1 82 0 3 735 11219 98 31 19 chr9 19787021 19788388 -104287784 - MusHAL1 LINE L1 -1126 1586 224 3 735 1355 170 0 0 chr9 19788387 19788611 -104287561 - Lx2 LINE L1 -493 6504 6281 3 735 27 29 0 0 chr9 19788666 19788700 -104287472 + AT_rich Low_complexity Low_complexity 1 34 0 3 735 2984 77 25 5 chr9 19789500 19789903 -104286269 - RLTR10A LTR ERVK 0 411 1 3 735 528 16 0 0 chr9 19790341 19790402 -104285770 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 3 735 1429 203 75 82 chr9 19790403 19790816 -104285356 + RMER10A LTR ERVL 31 440 -2 3 735 1799 274 55 52 chr9 19790969 19791604 -104284568 + ORR1B1-int LTR MaLR 5 641 -868 3 735 6021 189 20 20 chr9 19791616 19791790 -104284382 + Lx5 LINE L1 5435 5616 -1434 3 91 2728 58 9 11 chr9 19791790 19792137 -104284035 + ORR1A1 LTR MaLR 1 346 0 3 736 6021 248 35 8 chr9 19792137 19793524 -104282648 + Lx5 LINE L1 5617 7042 -8 3 736 29 0 0 0 chr9 19793534 19793563 -104282609 + AT_rich Low_complexity Low_complexity 1 29 0 3 736 396 138 0 0 chr9 19793574 19793639 -104282533 + (T)n Simple_repeat Simple_repeat 1 65 0 3 736 6336 156 12 7 chr9 19793689 19794759 -104281413 - MurERV4_19-int LTR ERVK -3180 2600 1525 3 736 6948 214 48 7 chr9 19795306 19796768 -104279404 - MurERV4_19-int LTR ERVK -4250 1530 9 3 736 1631 269 6 81 chr9 19796769 19797275 -104278897 - RMER19C LTR ERVK -2 609 142 3 736 1107 88 0 0 chr9 19798895 19799042 -104277130 + B1_Mus2 SINE Alu 1 147 0 3 736 226 353 65 57 chr9 19799617 19799740 -104276432 + B1F1 SINE Alu 5 128 -21 3 736 250 209 0 0 chr9 19799928 19799995 -104276177 - Lx9 LINE L1 -1 7643 7577 3 736 374 264 12 31 chr9 19800278 19800347 -104275825 + T-rich Low_complexity Low_complexity 91 161 0 3 736 1271 78 0 11 chr9 19800347 19800529 -104275643 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 3 736 374 264 12 31 chr9 19800529 19800619 -104275553 + T-rich Low_complexity Low_complexity 6 90 0 3 736 798 335 98 7 chr9 19801850 19802289 -104273883 + RCHARR1 DNA MER1_type 40 518 -456 3 736 377 300 75 92 chr9 19802318 19802557 -104273615 + Lx8 LINE L1 7217 7451 -22 3 736 419 305 24 72 chr9 19802557 19802808 -104273364 + RCHARR1 DNA MER1_type 508 746 -228 3 736 877 139 26 48 chr9 19802831 19803020 -104273152 - Lx3B LINE L1 -3 6970 6786 3 736 302 143 0 0 chr9 19803023 19803065 -104273107 - Lx3B LINE L1 -266 6707 6666 3 736 1666 124 124 0 chr9 19803065 19803356 -104272816 + IAPEY3_LTR LTR ERVK 1 327 -5 3 736 11171 146 12 12 chr9 19803357 19805303 -104270869 - Lx3B LINE L1 -300 6673 4667 3 736 2865 80 5 3 chr9 19805303 19805693 -104270479 + L1_Mus1 LINE L1 6177 6567 0 3 736 11171 146 3 18 chr9 19805693 19806362 -104269810 - Lx3B LINE L1 -1220 4666 4008 3 736 268 307 60 18 chr9 19806690 19806856 -104269316 - Lx7 LINE L1 -284 7412 7240 3 736 550 296 66 57 chr9 19806897 19807108 -104269064 - ORR1C2 LTR MaLR 0 384 172 3 736 278 216 32 0 chr9 19807108 19807233 -104268939 + GA-rich Low_complexity Low_complexity 1 129 0 3 736 455 261 29 130 chr9 19807233 19807440 -104268732 - ORR1C2 LTR MaLR -197 187 2 3 736 1617 260 48 31 chr9 19807441 19807689 -104268483 - L1_Mur3 LINE L1 -1559 4321 4069 3 736 312 27 0 0 chr9 19807689 19807726 -104268446 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 736 1617 260 48 31 chr9 19807726 19808044 -104268128 - L1_Mur3 LINE L1 -1812 4068 3739 3 736 508 54 0 13 chr9 19808044 19808119 -104268053 - L1_Mus1 LINE L1 0 6567 6494 3 736 1617 260 48 31 chr9 19808119 19808154 -104268018 - L1_Mur3 LINE L1 -2142 3738 3711 3 736 422 327 88 0 chr9 19808313 19808564 -104267608 + L1_Mur3 LINE L1 1542 1814 -4066 3 736 891 255 11 8 chr9 19808562 19808869 -104267303 - L1_Mur3 LINE L1 -2398 3748 3437 3 736 7324 83 15 0 chr9 19808864 19810260 -104265912 - L1_Mus2 LINE L1 0 6566 5146 3 736 356 218 10 0 chr9 19810256 19810357 -104265815 - L1_Mur3 LINE L1 -2399 3481 3380 3 736 1397 173 117 32 chr9 19810394 19810770 -104265402 + L1_Mur3 LINE L1 3651 4058 -1822 3 736 879 216 17 37 chr9 19810771 19810990 -104265182 + ORR1C1 LTR MaLR 128 330 -48 3 736 2329 248 16 16 chr9 19810990 19811491 -104264681 + Lx5 LINE L1 6409 6909 -141 3 736 4457 109 21 3 chr9 19811677 19812328 -104263844 - Lx3A LINE L1 -2 6979 6317 3 736 2644 91 0 0 chr9 19812328 19812689 -104263483 + L1_Mur1 LINE L1 4806 5166 -720 3 736 612 329 35 3 chr9 19812771 19813058 -104263114 - L1_Mur3 LINE L1 -6558 1170 875 3 736 942 120 35 0 chr9 19813381 19813523 -104262649 - B1_Mus1 SINE Alu 0 148 2 3 736 28 0 0 0 chr9 19813532 19813560 -104262612 + AT_rich Low_complexity Low_complexity 1 28 0 3 736 31 26 0 0 chr9 19813846 19813884 -104262288 + AT_rich Low_complexity Low_complexity 1 38 0 3 736 327 361 26 20 chr9 19814141 19814336 -104261836 + Lx7 LINE L1 7101 7296 -400 3 736 602 294 0 7 chr9 19814465 19814602 -104261570 + B1_Mur1 SINE Alu 12 147 -2 3 736 286 214 0 0 chr9 19814895 19814951 -104261221 - Lx7 LINE L1 -1950 5746 5691 3 736 385 303 59 7 chr9 19815418 19815571 -104260601 + Lx8 LINE L1 6289 6449 -1024 3 736 423 0 0 0 chr9 19815848 19815895 -104260277 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 736 420 20 0 0 chr9 19816038 19816087 -104260085 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 736 16339 86 2 13 chr9 19816333 19819413 -104256759 + L1Md_Gf LINE L1 371 3512 -2374 3 736 3364 34 0 132 chr9 19819413 19819915 -104256257 + RLTR10C LTR ERVK 1 436 0 3 736 1394 61 0 22 chr9 19819915 19820099 -104256073 + RLTR10-int LTR ERVK 1 180 -7401 3 736 233 214 0 0 chr9 19820099 19820141 -104256031 + RLTR27 LTR ERVK 231 272 -37 3 736 420 0 0 0 chr9 19820141 19820187 -104255985 + RLTR10-int LTR ERVK 222 267 -7314 3 736 282 200 0 53 chr9 19820269 19820364 -104255808 + A-rich Low_complexity Low_complexity 3 92 0 3 736 1945 36 155 4 chr9 19820364 19820642 -104255530 + RLTR10-int LTR ERVK 566 885 -1102 3 736 1750 44 0 4 chr9 19820611 19820837 -104255335 + MMERVK10C-int LTR ERVK 3512 3736 -3845 3 736 8424 39 16 1 chr9 19820835 19821840 -104254332 + MMERVK10C-int LTR ERVK 4791 5810 -1771 3 736 335 93 74 0 chr9 19821821 19821875 -104254297 + MMERVK10C-int LTR ERVK 6637 6694 -887 3 736 7051 43 8 53 chr9 19821919 19822854 -104253318 + MMERVK10C-int LTR ERVK 6690 7581 0 3 736 3771 25 5 0 chr9 19822854 19823288 -104252884 + RLTR10C LTR ERVK 1 436 0 3 736 5466 75 8 53 chr9 19823288 19823432 -104252740 + L1_Mm LINE L1 3504 3645 -2238 3 736 1171 54 0 13 chr9 19823432 19823581 -104252591 + B1_Mm SINE Alu 1 147 0 3 736 5466 75 8 53 chr9 19823581 19823686 -104252486 + L1_Mm LINE L1 3646 3717 -2166 3 736 6540 3 0 0 chr9 19823686 19824411 -104251761 + L1Md_A LINE L1 5858 6582 0 3 736 5466 75 8 53 chr9 19824411 19824994 -104251178 + L1_Mm LINE L1 3718 4300 -1583 3 736 710 306 98 54 chr9 19824996 19825494 -104250678 - ETnERV2-int LTR ERVK -6712 694 175 3 736 22 0 0 0 chr9 19825572 19825594 -104250578 + AT_rich Low_complexity Low_complexity 1 22 0 3 736 259 347 0 0 chr9 19825987 19826085 -104250087 - ETnERV2-int LTR ERVK -6242 1011 914 3 736 649 204 44 77 chr9 19826611 19826792 -104249380 - ETnERV2-int LTR ERVK -7231 175 1 3 736 331 231 0 0 chr9 19826836 19826901 -104249271 + RLTR13C2 LTR ERVK 744 808 0 3 736 931 197 53 122 chr9 19826901 19827200 -104248972 - RLTR11A LTR ERVK -266 294 1 3 736 31 26 0 0 chr9 19827325 19827363 -104248809 + AT_rich Low_complexity Low_complexity 1 38 0 3 736 931 199 38 0 chr9 19828046 19828232 -104247940 - ORR1A1 LTR MaLR -153 193 1 3 736 2619 37 12 0 chr9 19828331 19828653 -104247519 - L1Md_F2 LINE L1 -2 6580 6255 3 736 2209 42 0 0 chr9 19828653 19828916 -104247256 + L1Md_F2 LINE L1 5957 6219 -363 3 736 859 203 57 0 chr9 19829219 19829411 -104246761 - L1_Mur3 LINE L1 -2200 3680 3478 3 736 675 237 31 5 chr9 19829429 19829620 -104246552 + Lx8 LINE L1 5720 5915 -1558 3 736 680 344 52 0 chr9 19830116 19830421 -104245751 + Lx8 LINE L1 6595 6915 -558 3 736 231 367 60 60 chr9 19830573 19830938 -104245234 + Lx8 LINE L1 7107 7471 -2 3 736 315 0 0 0 chr9 19831123 19831158 -104245014 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 736 232 287 75 30 chr9 19834219 19834352 -104241820 - Lx7 LINE L1 0 7696 7558 3 736 320 204 80 20 chr9 19834460 19834560 -104241612 - Lx7 LINE L1 -335 7361 7256 3 736 1418 235 95 29 chr9 19834560 19835085 -104241087 + L1_Mur3 LINE L1 5061 5620 -260 3 736 428 62 0 15 chr9 19835509 19835574 -104240598 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 3 736 1498 94 0 9 chr9 19836094 19836309 -104239863 + L1Md_F2 LINE L1 6356 6568 -14 3 736 26 0 0 0 chr9 19836309 19836335 -104239837 + AT_rich Low_complexity Low_complexity 1 26 0 3 736 1358 82 11 0 chr9 19836952 19837134 -104239038 + B2_Mm1t SINE B2 2 185 -8 3 736 237 151 0 0 chr9 19838439 19838492 -104237680 + T-rich Low_complexity Low_complexity 1 53 0 3 736 785 76 0 0 chr9 19838492 19838597 -104237575 - B1_Mus2 SINE Alu 0 147 43 3 736 278 151 0 54 chr9 19838550 19838606 -104237566 - 4.5SRNA scRNA scRNA -8 86 34 3 736 387 0 0 0 chr9 19838961 19839004 -104237168 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 736 351 315 52 13 chr9 19839250 19839514 -104236658 - L1M1 LINE L1 -578 5725 5450 3 736 2874 58 42 8 chr9 19839544 19839927 -104236245 + MTA_Mm LTR MaLR 1 396 0 3 736 1228 163 20 75 chr9 19840385 19840503 -104235669 - Lx4A LINE L1 -1 7057 6952 3 736 1268 162 72 179 chr9 19840503 19840962 -104235210 - RMER17C LTR ERVK 0 410 1 3 736 1228 163 20 75 chr9 19840962 19841095 -104235077 - Lx4A LINE L1 -107 6951 6820 3 736 1883 192 89 23 chr9 19841153 19841589 -104234583 + RMER6A LTR ERVK 1 465 -291 3 736 279 0 0 0 chr9 19841695 19841726 -104234446 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 3 736 423 268 8 43 chr9 19841941 19842058 -104234114 - B1_Mur1 SINE Alu -36 113 1 3 736 6203 112 37 1 chr9 19843028 19843958 -104232214 + Lx3A LINE L1 5912 6874 -107 3 736 198 0 0 0 chr9 19843991 19844013 -104232159 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 736 599 127 0 10 chr9 19844216 19844319 -104231853 + Lx3A LINE L1 6879 6980 -1 3 736 25 0 0 0 chr9 19844320 19844345 -104231827 + AT_rich Low_complexity Low_complexity 1 25 0 3 736 227 269 0 37 chr9 19845120 19845201 -104230971 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 3 736 654 220 21 14 chr9 19845232 19845375 -104230797 + B3A SINE B2 8 151 -47 3 736 807 254 72 31 chr9 19845384 19845682 -104230490 + ORR1D1 LTR MaLR 29 379 0 3 736 380 285 112 34 chr9 19845738 19846194 -104229978 - Lx7 LINE L1 -1585 5888 5348 3 736 4627 216 53 167 chr9 19846193 19847892 -104228280 - Lx5 LINE L1 -532 6518 4770 3 736 742 294 47 44 chr9 19847892 19848230 -104227942 - RLTR15 LTR ERVK -16 343 5 3 736 4627 216 53 167 chr9 19848230 19848601 -104227571 - Lx5 LINE L1 -2281 4769 4388 3 736 578 27 0 0 chr9 19848601 19848674 -104227498 + B1_Mm SINE Alu 72 144 -3 3 736 4627 216 53 167 chr9 19848674 19848872 -104227300 - Lx5 LINE L1 -532 4387 4181 3 736 375 23 0 0 chr9 19848872 19848916 -104227256 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 736 4627 207 46 208 chr9 19848916 19849098 -104227074 - Lx5 LINE L1 -1697 4180 3997 3 736 7578 57 13 3 chr9 19849112 19850067 -104226105 - L1_Mus1 LINE L1 0 6567 5604 3 736 625 175 84 0 chr9 19850068 19850211 -104225961 - Lx5 LINE L1 -1883 3997 3843 3 736 7984 141 36 8 chr9 19850265 19852379 -104223793 - Lx3B LINE L1 -5 6968 4806 3 736 2677 256 23 97 chr9 19852389 19853378 -104222794 + RMER17B LTR ERVK 1 916 -42 3 736 2547 148 35 4 chr9 19853394 19853471 -104222701 - Lx3B LINE L1 -1073 4813 4737 3 736 210 37 0 0 chr9 19853471 19853498 -104222674 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 736 2547 148 35 4 chr9 19853498 19853903 -104222269 - Lx3B LINE L1 -1150 4736 4317 3 736 12184 170 33 24 chr9 19853903 19854596 -104221576 - MYSERV6-int LTR ERVK -5846 3113 2416 3 736 192 77 0 0 chr9 19854596 19854622 -104221550 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 736 12184 170 33 24 chr9 19854622 19855316 -104220856 - MYSERV6-int LTR ERVK -6544 2415 1730 3 736 2400 183 44 40 chr9 19855316 19855811 -104220361 - RLTR19 LTR ERVK 0 499 3 4 736 12184 174 85 18 chr9 19855811 19857308 -104218864 - MYSERV6-int LTR ERVK -7230 1729 115 3 736 22 0 0 0 chr9 19857317 19857339 -104218833 + AT_rich Low_complexity Low_complexity 1 22 0 4 736 481 237 26 0 chr9 19857341 19857455 -104218717 - MYSERV6-int LTR ERVK -8841 118 2 3 736 181 102 20 39 chr9 19857460 19857511 -104218661 + T-rich Low_complexity Low_complexity 5 54 0 4 736 1055 207 290 24 chr9 19857511 19857851 -104218321 - RMER6B LTR ERVK -2 459 28 3 736 344 175 0 0 chr9 19857882 19857945 -104218227 - MYSERV6-int LTR ERVK -8658 301 239 4 736 276 301 79 59 chr9 19858047 19858199 -104217973 - RMER15-int LTR ERVL -207 4792 4638 4 736 510 17 0 0 chr9 19858201 19858260 -104217912 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 736 230 0 33 0 chr9 19858260 19858289 -104217883 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 736 469 394 16 20 chr9 19858346 19858592 -104217580 + Lx8 LINE L1 6929 7173 -300 4 736 672 111 74 0 chr9 19858593 19858701 -104217471 - ORR1A4 LTR MaLR 0 329 214 4 736 23 68 0 0 chr9 19858801 19858845 -104217327 + AT_rich Low_complexity Low_complexity 1 44 0 4 736 21 0 0 0 chr9 19860070 19860091 -104216081 + AT_rich Low_complexity Low_complexity 1 21 0 4 736 21 36 0 0 chr9 19860203 19860231 -104215941 + AT_rich Low_complexity Low_complexity 1 28 0 4 736 24 0 0 0 chr9 19861071 19861095 -104215077 + AT_rich Low_complexity Low_complexity 1 24 0 4 736 21 57 0 0 chr9 19862503 19862538 -104213634 + AT_rich Low_complexity Low_complexity 1 35 0 4 736 386 221 23 0 chr9 19862968 19863054 -104213118 + B1_Mm SINE Alu 59 146 -1 4 736 22 0 0 0 chr9 19863102 19863124 -104213048 + AT_rich Low_complexity Low_complexity 1 22 0 4 736 246 302 106 45 chr9 19863463 19863595 -104212577 - RLTR20D LTR ERVK -9 568 429 4 736 410 264 101 51 chr9 19863604 19863849 -104212323 - RLTR20D LTR ERVK -243 262 31 4 736 2006 215 100 22 chr9 19863873 19864062 -104212110 - MYSERV16_I-int LTR ERVK -21 2305 2105 4 736 4118 59 10 0 chr9 19864062 19864569 -104211603 - LTRIS3 LTR ERV1 0 512 1 4 736 2006 215 100 22 chr9 19864569 19865021 -104211151 - MYSERV16_I-int LTR ERVK -222 2104 1614 4 736 1971 125 65 40 chr9 19865049 19865448 -104210724 + RLTR9E LTR ERVK 1 409 0 4 736 4091 193 29 95 chr9 19865450 19866609 -104209563 + MMETn-int LTR ERVK 2 1083 -3761 4 736 41060 5 0 0 chr9 19866609 19872966 -104203206 - L1Md_A LINE L1 0 6582 225 4 736 409 182 20 10 chr9 19872967 19873067 -104203105 + MMETn-int LTR ERVK 1985 2085 -5321 4 736 1733 177 217 29 chr9 19873064 19873515 -104202657 + MMETn-int LTR ERVK 2428 2963 -4443 4 736 1550 92 18 0 chr9 19873513 19873730 -104202442 + MMETn-int LTR ERVK 3809 4029 -3377 4 736 3342 201 31 54 chr9 19873725 19875116 -104201056 + MMETn-int LTR ERVK 2356 3750 -1094 4 736 333 123 0 58 chr9 19875210 19875279 -104200893 + RLTR45-int LTR ERVK 6008 6072 -1172 4 736 1334 140 53 45 chr9 19875292 19875538 -104200634 + ETnERV3-int LTR ERVK 5529 5776 -32 4 736 1709 211 146 8 chr9 19875554 19876027 -104200145 + RLTR13D6 LTR ERVK 1 539 -363 4 736 467 56 26 66 chr9 19876027 19876103 -104200069 + MMETn-int LTR ERVK 7331 7403 -3 4 736 1804 154 63 38 chr9 19876105 19876504 -104199668 + RLTR9E LTR ERVK 1 409 0 4 736 1490 128 8 8 chr9 19876560 19876797 -104199375 + RMER17A2 LTR ERVK 1 237 -669 4 736 4685 131 22 95 chr9 19876833 19877802 -104198370 + RMER17A2 LTR ERVK 1 898 -8 4 736 688 208 84 6 chr9 19877804 19877930 -104198242 + RMER17A-int LTR ERVK 3 130 -1598 4 736 640 43 22 0 chr9 19877930 19878022 -104198150 + (TC)n Simple_repeat Simple_repeat 1 94 0 4 736 688 208 84 6 chr9 19878022 19878074 -104198098 + RMER17A-int LTR ERVK 131 194 -1534 4 736 442 256 22 147 chr9 19878216 19878536 -104197636 + RMER17A-int LTR ERVK 468 747 -981 4 736 4655 127 49 5 chr9 19878634 19879505 -104196667 + RMER17A-int LTR ERVK 786 1726 -2 4 736 4576 118 14 56 chr9 19879507 19880350 -104195822 + RMER17A2 LTR ERVK 1 808 -1 4 736 189 74 0 0 chr9 19880359 19880386 -104195786 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 736 4632 160 14 31 chr9 19880386 19880951 -104195221 - L1_Mm LINE L1 -1256 4627 4056 4 736 1145 68 0 7 chr9 19880951 19881099 -104195073 + B1_Mus1 SINE Alu 2 148 0 4 736 4632 160 14 31 chr9 19881099 19881391 -104194781 - L1_Mm LINE L1 -1828 4055 3785 4 736 368 95 16 0 chr9 19881385 19881448 -104194724 - L1_Mm LINE L1 -2767 3116 3053 4 736 2667 101 16 3 chr9 19881825 19882201 -104193971 - MERVK26-int LTR ERVK -4131 2788 2408 4 736 12429 140 23 20 chr9 19882178 19882822 -104193350 - MERVK26-int LTR ERVK -4868 2051 1395 4 736 669 13 0 0 chr9 19882822 19882900 -104193272 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 736 12429 140 23 20 chr9 19882900 19884299 -104191873 - MERVK26-int LTR ERVK -5525 1394 2 4 736 2393 205 45 109 chr9 19884299 19884985 -104191187 - RLTR26 LTR ERVK 0 642 1 4 736 270 226 0 114 chr9 19884985 19885055 -104191117 + MERVL_2A-int LTR ERVL 4258 4319 -1442 4 736 1051 258 109 66 chr9 19885060 19885517 -104190655 - RLTR20B3 LTR ERVK -80 497 21 4 736 5364 229 72 69 chr9 19885521 19885672 -104190500 - MYSERV16_I-int LTR ERVK 0 2326 2165 4 736 231 147 45 7 chr9 19885672 19885725 -104190447 - B3A SINE B2 -163 53 1 4 736 5364 229 72 69 chr9 19885725 19886751 -104189421 - MYSERV16_I-int LTR ERVK 0 2164 1062 4 736 1071 86 7 0 chr9 19886751 19886891 -104189281 - B1_Mus1 SINE Alu -6 142 2 4 736 5364 229 72 69 chr9 19886891 19887250 -104188922 - MYSERV16_I-int LTR ERVK -1265 1061 668 4 736 244 252 122 65 chr9 19887250 19887373 -104188799 - MLT1F1 LTR MaLR -61 508 379 4 736 5364 229 72 69 chr9 19887373 19887978 -104188194 - MYSERV16_I-int LTR ERVK -1265 667 1 4 736 3706 297 55 36 chr9 19889152 19889427 -104186745 + MERVL_2A-int LTR ERVL 4307 4587 -1174 4 736 216 0 0 0 chr9 19889427 19889451 -104186721 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 736 3706 297 55 36 chr9 19889451 19890602 -104185570 + MERVL_2A-int LTR ERVL 4588 5761 0 4 736 1562 291 19 24 chr9 19890603 19891083 -104185089 + MT2A LTR ERVL 3 560 -41 4 736 405 0 0 0 chr9 19891089 19891134 -104185038 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 736 654 219 436 10 chr9 19891135 19891436 -104184736 - MT2A LTR ERVL -10 523 96 4 736 9699 148 50 13 chr9 19891530 19892848 -104183324 - Lx4A LINE L1 -1 7057 5669 4 736 2221 30 8 0 chr9 19892848 19893115 -104183057 + L1Md_F2 LINE L1 6314 6582 0 4 736 9699 147 26 9 chr9 19893115 19894592 -104181580 - Lx4A LINE L1 -209 5668 4157 4 736 1116 153 123 8 chr9 19894589 19894833 -104181339 + L1_Mur2 LINE L1 2600 2871 -3006 4 736 2133 231 156 8 chr9 19894838 19895743 -104180429 - Lx5 LINE L1 -1081 5969 4883 4 736 1458 266 53 72 chr9 19895743 19896083 -104180089 + RLTR26 LTR ERVK 5 392 -250 4 736 1063 80 0 0 chr9 19896083 19896221 -104179951 + B1_Mus1 SINE Alu 3 140 -8 4 736 972 92 0 0 chr9 19896221 19896362 -104179810 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 4 736 1458 266 51 83 chr9 19896362 19896546 -104179626 + RLTR26 LTR ERVK 393 544 -98 4 736 495 242 25 75 chr9 19896598 19896759 -104179413 + RLTR26 LTR ERVK 490 642 0 4 736 2413 221 18 5 chr9 19896760 19897315 -104178857 - Lx5 LINE L1 -1008 4869 4308 4 736 3590 167 58 9 chr9 19897316 19898043 -104178129 + Lx2 LINE L1 6193 6996 -1 4 736 800 141 0 0 chr9 19898042 19898170 -104178002 - L1_Mm LINE L1 -438 5445 5318 4 736 1552 212 86 11 chr9 19898187 19898644 -104177528 - L1_Mur2 LINE L1 -4180 1700 1201 4 736 261 119 0 0 chr9 19898644 19898686 -104177486 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 4 736 1116 220 51 94 chr9 19898686 19899062 -104177110 - L1_Mur2 LINE L1 -6515 1213 855 4 736 239 106 64 0 chr9 19899197 19899244 -104176928 - L1_Mur2 LINE L1 -4608 1269 1220 4 736 368 40 0 20 chr9 19899256 19899307 -104176865 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 4 736 28 0 0 0 chr9 19900333 19900361 -104175811 + AT_rich Low_complexity Low_complexity 1 28 0 4 736 198 71 0 0 chr9 19900617 19900645 -104175527 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 4 736 6944 62 18 4 chr9 19900647 19901554 -104174618 - L1_Mus1 LINE L1 0 6567 5649 4 736 3278 81 18 11 chr9 19902099 19902550 -104173622 - Lx3_Mus LINE L1 -5 7004 6551 4 736 21 0 0 0 chr9 19902570 19902591 -104173581 + AT_rich Low_complexity Low_complexity 1 21 0 4 736 258 274 99 23 chr9 19902593 19902724 -104173448 + L1MB3 LINE L1 6033 6173 -10 4 736 536 214 0 15 chr9 19903280 19903413 -104172759 + A-rich Low_complexity Low_complexity 2 132 0 4 736 307 311 46 28 chr9 19906342 19906451 -104169721 - PB1D10 SINE Alu -6 111 1 4 736 210 71 0 0 chr9 19907768 19907796 -104168376 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 736 418 281 67 38 chr9 19908160 19908475 -104167697 + L1_Rod LINE L1 2925 3248 -2599 4 736 376 285 19 0 chr9 19908560 19908729 -104167443 - L1_Mur3 LINE L1 -2665 3478 3272 4 736 879 286 17 4 chr9 19909219 19909458 -104166714 + L1_Mur3 LINE L1 324 565 -7163 4 736 596 195 95 28 chr9 19909461 19909640 -104166532 + L1_Mur3 LINE L1 1749 1939 -3941 4 736 425 195 13 0 chr9 19909671 19909830 -104166342 + (CATATA)n Simple_repeat Simple_repeat 4 164 0 4 736 514 230 70 50 chr9 19909832 19909910 -104166262 + L1_Mur3 LINE L1 1938 2020 -3860 4 736 1167 157 10 0 chr9 19909910 19910114 -104166058 + Lx3A LINE L1 6764 6969 -12 4 736 198 0 0 0 chr9 19910114 19910136 -104166036 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 4 736 514 230 70 50 chr9 19910136 19910298 -104165874 + L1_Mur3 LINE L1 2021 2183 -3697 4 736 3302 153 50 14 chr9 19910292 19910945 -104165227 + L1Md_F LINE L1 487 1108 -5411 4 736 30351 104 8 28 chr9 19910935 19913207 -104162965 + L1_Mus1 LINE L1 397 2623 -3260 4 736 6343 63 11 5 chr9 19913207 19914010 -104162162 + RLTR13C2 LTR ERVK 1 808 0 4 736 30351 105 9 3 chr9 19914010 19917927 -104158245 + L1_Mus1 LINE L1 2624 6566 -1 4 736 12130 164 131 14 chr9 19917946 19919077 -104157095 + L1_Mur1 LINE L1 2150 3600 -2286 4 736 3332 41 5 0 chr9 19919077 19919471 -104156701 + MTA_Mm LTR MaLR 1 396 0 4 736 12130 164 131 14 chr9 19919471 19919704 -104156468 + L1_Mur1 LINE L1 3601 3832 -2054 4 736 1547 161 92 0 chr9 19919704 19920008 -104156164 + IAPEY3_LTR LTR ERVK 1 332 0 4 736 12130 164 131 14 chr9 19920008 19921286 -104154886 + L1_Mur1 LINE L1 3833 5100 -786 4 736 6907 84 73 5 chr9 19921288 19922331 -104153841 + L1_Mus3 LINE L1 5513 6626 -12 4 736 566 28 14 0 chr9 19922333 19922405 -104153767 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 4 736 1202 113 5 10 chr9 19922415 19922611 -104153561 + L1_Mur1 LINE L1 5102 5296 -581 4 11 435 369 92 5 chr9 19922754 19922972 -104153200 - L2 LINE L2 -552 2867 2631 4 737 322 148 0 0 chr9 19924673 19924727 -104151445 + L1_Mur1 LINE L1 5536 5589 -297 4 737 7680 70 3 6 chr9 19924727 19925725 -104150447 + L1Md_F2 LINE L1 5587 6581 -1 4 737 8357 142 49 6 chr9 19925728 19927386 -104148786 + Lx2A LINE L1 5291 7008 0 4 737 24 32 0 0 chr9 19927392 19927423 -104148749 + AT_rich Low_complexity Low_complexity 1 31 0 4 737 496 167 11 0 chr9 19927423 19927513 -104148659 + RLTR11A LTR ERVK 435 525 -3 4 737 496 298 123 8 chr9 19927513 19927879 -104148293 - L1_Mur3 LINE L1 -6572 1140 733 4 737 216 0 0 0 chr9 19928124 19928148 -104148024 + (ATTG)n Simple_repeat Simple_repeat 3 26 0 4 737 509 321 104 26 chr9 19928390 19928711 -104147461 - MTC LTR MaLR -55 366 5 4 737 1979 204 23 25 chr9 19928813 19929255 -104146917 - Lx2B LINE L1 0 7000 6560 4 737 295 156 62 0 chr9 19929252 19929316 -104146856 - L1_Mur2 LINE L1 -542 5335 5268 4 737 5374 220 42 65 chr9 19929321 19931107 -104145065 - L1_Rod LINE L1 -516 5331 3587 4 737 44 35 0 0 chr9 19931107 19931165 -104145007 + AT_rich Low_complexity Low_complexity 1 58 0 4 737 922 272 64 73 chr9 19931297 19931654 -104144518 - ORR1E LTR MaLR -2 357 4 4 737 1485 217 63 47 chr9 19931742 19931766 -104144406 - L1_Rod LINE L1 -2249 3598 3580 4 737 522 128 9 35 chr9 19931766 19931879 -104144293 - L1Md_F2 LINE L1 0 6582 6473 4 737 1485 217 63 47 chr9 19931879 19932361 -104143811 - L1_Rod LINE L1 -2268 3579 3084 4 737 424 327 114 0 chr9 19932364 19932636 -104143536 + L1MA4 LINE L1 5633 5935 -365 4 737 387 0 0 0 chr9 19932644 19932687 -104143485 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 737 293 0 27 0 chr9 19932726 19932763 -104143409 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 737 207 0 0 0 chr9 19934528 19934551 -104141621 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 4 737 204 40 0 0 chr9 19934715 19934740 -104141432 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 737 995 66 7 0 chr9 19934742 19934878 -104141294 + (GA)n Simple_repeat Simple_repeat 1 137 0 4 737 469 194 20 0 chr9 19934878 19934976 -104141196 + Lx9 LINE L1 7537 7636 -8 4 737 25 51 0 0 chr9 19935197 19935236 -104140936 + AT_rich Low_complexity Low_complexity 1 39 0 4 737 21 36 0 0 chr9 19935380 19935408 -104140764 + AT_rich Low_complexity Low_complexity 1 28 0 4 737 856 266 86 9 chr9 19935901 19936250 -104139922 + L1MA4A LINE L1 5523 5898 -405 5 737 247 232 131 4 chr9 19936959 19937112 -104139060 - Lx6 LINE L1 -9 7451 7275 5 737 209 159 23 0 chr9 19937119 19937163 -104139009 + GA-rich Low_complexity Low_complexity 4 48 0 5 737 292 341 75 82 chr9 19937266 19937400 -104138772 + B4A SINE B4 27 159 -133 5 737 1312 247 9 41 chr9 19937436 19937774 -104138398 - Lx5 LINE L1 -3 7047 6721 5 737 4551 187 9 31 chr9 19937773 19938624 -104137548 - L1_Mur2 LINE L1 -1893 3984 3148 5 737 327 113 0 0 chr9 19938624 19938686 -104137486 + (ATTG)n Simple_repeat Simple_repeat 2 63 0 5 737 4551 187 9 31 chr9 19938686 19938705 -104137467 - L1_Mur2 LINE L1 -2730 3147 3133 5 737 2305 142 28 3 chr9 19938705 19939092 -104137080 - Lx2 LINE L1 -3 6994 6598 5 737 4551 187 9 31 chr9 19939092 19939235 -104136937 - L1_Mur2 LINE L1 -2745 3132 2993 5 737 928 216 51 5 chr9 19939255 19939469 -104136703 - Lx5 LINE L1 -1 7049 6826 5 737 447 184 0 0 chr9 19939493 19939580 -104136592 + CT-rich Low_complexity Low_complexity 2 88 0 5 737 543 256 94 40 chr9 19939589 19939866 -104136306 - L1_Rod LINE L1 -2189 3658 3367 5 737 4009 201 47 9 chr9 19939913 19940766 -104135406 - Lx3C LINE L1 -2 6974 6090 5 737 559 104 0 0 chr9 19940760 19940837 -104135335 - L1_Mur2 LINE L1 -1135 4742 4666 5 737 235 235 0 0 chr9 19940830 19940881 -104135291 - L1_Rod LINE L1 -2481 3366 3316 5 737 1283 113 5 0 chr9 19941127 19941313 -104134859 - B2_Mm1t SINE B2 -5 188 2 5 737 21 0 0 0 chr9 19941506 19941527 -104134645 + AT_rich Low_complexity Low_complexity 1 21 0 5 737 325 301 51 7 chr9 19942752 19942933 -104133239 + L1M1 LINE L1 5445 5642 -658 5 737 200 111 28 0 chr9 19943189 19943225 -104132947 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 5 737 275 163 0 0 chr9 19943228 19943271 -104132901 + L1VL2 LINE L1 135 177 -6158 5 737 457 268 87 0 chr9 19943271 19943398 -104132774 + L1VL2 LINE L1 289 400 -5935 5 737 4953 142 22 65 chr9 19943398 19944805 -104131367 + L1VL2 LINE L1 1 1339 -2276 5 737 1901 169 53 0 chr9 19944775 19945130 -104131042 + Lx2B LINE L1 3356 3729 -2148 5 737 4642 159 21 4 chr9 19945129 19945951 -104130221 + Lx2B LINE L1 4458 5293 -584 5 737 2601 176 20 14 chr9 19945953 19946442 -104129730 + RLTR16 LTR ERVK 1 492 -13 5 737 7705 96 13 10 chr9 19946452 19947779 -104128393 + L1_Mus3 LINE L1 5296 6633 -5 5 737 7597 142 43 12 chr9 19947778 19949054 -104127118 + Lx2B LINE L1 5684 6998 -2 5 737 24 79 0 13 chr9 19949127 19949154 -104127018 + AT_rich Low_complexity Low_complexity 1 27 0 5 737 1048 243 9 14 chr9 19949154 19949371 -104126801 + B3 SINE B2 1 216 0 5 737 24 79 0 13 chr9 19949371 19949420 -104126752 + AT_rich Low_complexity Low_complexity 1 49 0 5 737 740 209 58 19 chr9 19949451 19949660 -104126512 + RMER12 LTR ERVK 1 230 -1174 5 737 1378 87 14 33 chr9 19949706 19949920 -104126252 - L1_Mus3 LINE L1 0 6638 6429 5 737 4841 178 41 3 chr9 19949921 19950773 -104125399 - RMER19B LTR ERVK -18 884 1 5 737 570 196 34 57 chr9 19950810 19950972 -104125200 + RMER12 LTR ERVK 662 784 -538 5 737 239 0 32 0 chr9 19950972 19951003 -104125169 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 737 570 238 165 136 chr9 19951003 19951081 -104125091 + RMER12 LTR ERVK 785 856 -466 5 737 459 78 0 0 chr9 19951081 19951145 -104125027 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 737 570 238 165 136 chr9 19951145 19951295 -104124877 + RMER12 LTR ERVK 857 1047 -275 5 737 207 0 0 0 chr9 19951595 19951618 -104124554 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 737 1957 216 55 11 chr9 19952074 19952514 -104123658 - Lx5 LINE L1 -3 7047 6589 5 737 7678 146 50 9 chr9 19952503 19953890 -104122282 - L1_Mur2 LINE L1 -1403 4474 3031 5 737 5223 249 42 26 chr9 19953896 19954104 -104122068 - Lx4B LINE L1 -63 6913 6712 5 737 8324 96 8 33 chr9 19954104 19955247 -104120925 + RLTR13D3 LTR ERVK 1 1114 0 5 737 5223 173 32 8 chr9 19955247 19956153 -104120019 - Lx4B LINE L1 -347 6711 5783 5 737 4337 211 29 35 chr9 19956180 19957146 -104119026 - Lx2B LINE L1 -11 6989 6030 5 737 1404 236 18 4 chr9 19957144 19957496 -104118676 - Lx4B LINE L1 -208 5669 5343 5 737 26422 146 20 3 chr9 19957550 19962812 -104113360 - L1_Mus3 LINE L1 -8 6630 1290 5 737 27880 95 12 4 chr9 19962807 19964091 -104112081 - L1_Mus2 LINE L1 0 6566 5244 5 737 654 13 0 0 chr9 19964091 19964166 -104112006 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 737 27880 134 23 12 chr9 19964166 19968124 -104108048 - L1_Mus2 LINE L1 -640 5243 1262 5 737 411 21 0 0 chr9 19968124 19968172 -104108000 + (TTA)n Simple_repeat Simple_repeat 1 48 0 5 737 1142 92 0 0 chr9 19968174 19968315 -104107857 - B1_Mus1 SINE Alu -6 142 2 5 737 27880 179 10 40 chr9 19968315 19968864 -104107308 - L1_Mus2 LINE L1 -5396 1261 511 5 737 498 33 0 0 chr9 19968941 19969001 -104107171 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 5 737 432 0 0 0 chr9 19969114 19969162 -104107010 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 5 737 2314 174 26 16 chr9 19969188 19969615 -104106557 - Lx4B LINE L1 -62 6996 6566 5 737 1860 192 62 13 chr9 19969614 19970000 -104106172 + Lx4B LINE L1 6020 6424 -634 5 737 1215 77 0 0 chr9 19970038 19970181 -104105991 - B1_Mus1 SINE Alu -5 143 1 5 737 7487 143 54 22 chr9 19970190 19970209 -104105963 - L1_Mur1 LINE L1 -3233 2653 2629 5 737 1648 185 59 0 chr9 19970209 19970512 -104105660 - Lx3C LINE L1 -3 6973 6653 5 737 7487 143 54 22 chr9 19970512 19971684 -104104488 - L1_Mur1 LINE L1 -3258 2628 1433 5 737 2313 75 0 4 chr9 19971684 19971965 -104104207 - L1_Mus2 LINE L1 0 6566 6287 5 737 7487 148 34 16 chr9 19971965 19972551 -104103621 - L1_Mur1 LINE L1 -4454 1432 833 5 737 288 133 0 0 chr9 19972712 19972757 -104103415 - L1_Mur1 LINE L1 -6231 753 709 5 737 1488 179 15 22 chr9 19972881 19973155 -104103017 - Lx2 LINE L1 -2 6995 6724 5 737 1483 179 0 0 chr9 19973155 19973395 -104102777 + RMER13B LTR ERVK 255 494 -414 5 737 478 252 50 14 chr9 19973692 19973833 -104102339 - MER21-int LTR ERV1 -1983 2208 2063 5 737 429 363 100 17 chr9 19973908 19974138 -104102034 - MLT1A0 LTR MaLR -114 251 3 5 737 268 307 27 0 chr9 19974145 19974220 -104101952 - MER21-int LTR ERV1 -2132 2059 1983 5 737 1830 209 85 6 chr9 19974304 19974739 -104101433 - BGLII_B LTR ERVK -11 430 1 5 737 943 130 0 14 chr9 19976453 19976465 -104099707 - B1_Mus2 SINE Alu 0 147 136 5 737 333 47 0 0 chr9 19976465 19976508 -104099664 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 5 737 943 130 0 14 chr9 19976508 19976643 -104099529 - B1_Mus2 SINE Alu -12 135 2 5 737 207 171 0 0 chr9 19976773 19976808 -104099364 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 5 737 604 174 121 57 chr9 19977530 19977670 -104098502 + U1 snRNA snRNA 1 149 -16 5 737 23 0 0 0 chr9 19977684 19977707 -104098465 + AT_rich Low_complexity Low_complexity 1 23 0 5 737 251 208 0 0 chr9 19978897 19978945 -104097227 - L1_Mur3 LINE L1 -255 5592 5545 5 737 266 245 10 0 chr9 19978967 19979065 -104097107 + (TA)n Simple_repeat Simple_repeat 1 99 0 5 737 539 242 15 109 chr9 19979067 19979345 -104096827 - L1_Mur3 LINE L1 -292 5555 5294 5 737 7576 121 238 23 chr9 19979319 19980780 -104095392 - L1_Mus2 LINE L1 0 6566 4973 5 737 4688 204 62 14 chr9 19981456 19982524 -104093648 - Lx3C LINE L1 -2 6998 5875 5 737 3049 132 14 20 chr9 19982498 19983002 -104093170 - L1_Mur2 LINE L1 -1470 4407 3907 5 737 1959 132 67 21 chr9 19983011 19983383 -104092789 - L1_Mur2 LINE L1 -2496 3390 3002 5 737 1146 284 25 25 chr9 19984217 19984618 -104091554 - L1_Rod LINE L1 -726 5121 4721 5 737 234 0 0 0 chr9 19984628 19984654 -104091518 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 737 9072 94 28 15 chr9 19984654 19986940 -104089232 - Lx3A LINE L1 -11 6970 4646 5 737 296 242 162 29 chr9 19986979 19987115 -104089057 + L1Md_F LINE L1 571 724 -5795 5 737 7482 88 24 1 chr9 19987142 19988164 -104088008 - L1_Mus3 LINE L1 0 6638 5594 5 737 3156 24 0 0 chr9 19988166 19988503 -104087669 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 737 56125 27 15 6 chr9 19988503 19994918 -104081254 - IAPEz-int LTR ERVK 0 6481 8 5 737 3170 21 0 0 chr9 19994918 19995255 -104080917 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 737 3554 139 0 0 chr9 19995255 19995793 -104080379 - L1_Mus3 LINE L1 -286 5597 5060 5 737 3670 175 24 18 chr9 19995838 19996893 -104079279 + L1VL4 LINE L1 148 1209 -2350 5 737 412 133 0 0 chr9 19996896 19996956 -104079216 + L1Md_Gf LINE L1 278 337 -6282 5 737 17793 57 0 2 chr9 19996949 19999729 -104076443 + L1Md_Gf LINE L1 563 3434 -2452 5 737 2467 7 0 0 chr9 19999724 20000000 -104076172 + L1Md_Gf LINE L1 3891 4166 -1720 5 737 12090 27 0 0 chr9 20000000 20001423 -104074749 + L1Md_A LINE L1 4164 5586 -297 1 737 8468 32 0 0 chr9 20001423 20002417 -104073755 + L1Md_A LINE L1 5587 6580 -2 1 737 1639 90 4 12 chr9 20002417 20002675 -104073497 + MusHAL1 LINE L1 351 606 -2106 2 737 9526 107 123 48 chr9 20002670 20003201 -104072971 + L1_Mm LINE L1 2435 2965 -2918 3 737 3924 137 89 14 chr9 20003201 20003900 -104072272 - RMER17A LTR ERVK 0 751 1 4 737 9526 107 123 48 chr9 20003900 20005147 -104071025 + L1_Mm LINE L1 2966 4347 -1536 3 737 1334 113 0 5 chr9 20005147 20005343 -104070829 - RLTR1B LTR ERV1 0 512 318 5 737 531 119 0 0 chr9 20005343 20005427 -104070745 - L1_Mm LINE L1 -3229 2654 2571 6 737 309 278 0 43 chr9 20005446 20005540 -104070632 + PB1D10 SINE Alu 28 117 0 7 737 5336 121 14 19 chr9 20005685 20006384 -104069788 - L1VL2 LINE L1 -1789 1826 1132 8 737 363 23 0 0 chr9 20006384 20006428 -104069744 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 9 737 5842 112 56 19 chr9 20006428 20006661 -104069511 - L1VL2 LINE L1 -2484 1131 905 8 737 2443 135 28 60 chr9 20006661 20007095 -104069077 + RLTR9B2 LTR ERVK 1 420 0 1 737 5842 107 80 18 chr9 20007095 20007880 -104068292 - L1VL2 LINE L1 -5431 904 53 8 737 12347 187 20 33 chr9 20007869 20007993 -104068179 - L1_Mur2 LINE L1 -1933 3944 3815 1 737 3190 94 29 21 chr9 20007993 20008471 -104067701 + RLTR45 LTR ERVK 1 482 0 1 737 12347 190 18 30 chr9 20008471 20011375 -104064797 - L1_Mur2 LINE L1 -2063 3814 952 1 737 1098 261 59 61 chr9 20011999 20012460 -104063712 + L1_Rod LINE L1 5133 5592 -255 1 737 537 240 116 7 chr9 20013648 20013795 -104062377 - U1 snRNA snRNA -2 163 1 1 737 583 296 46 38 chr9 20018164 20018285 -104057887 + MER21-int LTR ERV1 1944 2062 -2129 1 737 568 331 51 31 chr9 20018285 20018637 -104057535 + MLT1A0 LTR MaLR 3 361 -4 1 737 583 296 46 38 chr9 20018637 20018778 -104057394 + MER21-int LTR ERV1 2063 2208 -1983 1 737 549 310 53 53 chr9 20018908 20019279 -104056893 + RLTR14-int LTR ERV1 2836 3163 -1900 1 737 657 342 78 51 chr9 20019692 20020361 -104055811 + RLTR14-int LTR ERV1 3164 3850 -1467 1 737 458 321 0 0 chr9 20020559 20020699 -104055473 + MERVL_2A-int LTR ERVL 2164 2303 -3458 1 737 717 217 70 74 chr9 20020732 20020961 -104055211 - RLTR20B3 LTR ERVK -329 248 21 1 737 278 136 158 12 chr9 20020965 20021047 -104055125 - MYSERV16_I-int LTR ERVK 0 2326 2233 1 737 2548 137 2 9 chr9 20021056 20021477 -104054695 - Lx2 LINE L1 -1 6996 6579 2 737 1566 187 64 6 chr9 20021477 20021789 -104054383 - ORR1C2 LTR MaLR -54 330 1 2 737 1608 98 8 4 chr9 20021833 20022079 -104054093 - L1_Mus3 LINE L1 -7 6631 6385 2 737 3314 74 22 0 chr9 20022079 20022536 -104053636 + L1_Mur1 LINE L1 3823 4289 -1597 2 737 3386 57 2 0 chr9 20022538 20022963 -104053209 + L1Md_F3 LINE L1 5160 5585 -298 2 737 8149 29 5 10 chr9 20022964 20023950 -104052222 + L1Md_F3 LINE L1 5587 6567 -17 2 737 4696 95 3 4 chr9 20023976 20024663 -104051509 + L1_Mur1 LINE L1 4275 4960 -926 2 737 593 184 0 0 chr9 20024672 20024775 -104051397 - L1_Mur1 LINE L1 -6672 310 208 2 737 282 182 0 0 chr9 20024768 20024823 -104051349 - L1_Mur2 LINE L1 -2701 3176 3122 2 737 2888 271 37 14 chr9 20024807 20025165 -104051007 - Lx3C LINE L1 -76 6900 6254 2 737 2209 204 21 50 chr9 20025165 20025743 -104050429 - RLTR31_Mm LTR ERVK 0 561 1 2 737 2888 256 30 13 chr9 20025743 20026210 -104049962 - Lx3C LINE L1 -373 6603 6135 2 737 1265 149 9 5 chr9 20026221 20026444 -104049728 - MusHAL1 LINE L1 -793 1919 1696 2 737 1831 104 117 0 chr9 20026444 20026753 -104049419 + IAPLTR4 LTR ERVK 1 345 0 3 737 1124 71 25 25 chr9 20026753 20026911 -104049261 + IAPLTR4_I LTR ERVK 19 176 -1294 3 737 1219 143 55 38 chr9 20026910 20027307 -104048865 + IAPLTR4_I LTR ERVK 433 952 -6629 3 737 1434 208 107 45 chr9 20027426 20027907 -104048265 + RMER16-int LTR ERVK 255 819 -4587 3 737 451 239 88 0 chr9 20027912 20028025 -104048147 + RMER16-int LTR ERVK 938 1060 -5077 3 737 10258 92 34 14 chr9 20028130 20029363 -104046809 + ETnERV3-int LTR ERVK 2735 3976 -1832 3 737 216 0 0 0 chr9 20029363 20029387 -104046785 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 737 10258 92 34 14 chr9 20029387 20029762 -104046410 + ETnERV3-int LTR ERVK 3977 4373 -1435 3 737 10797 108 7 9 chr9 20029754 20031327 -104044845 + MMERVK10C-int LTR ERVK 3102 4670 -2911 3 737 2082 182 1 11 chr9 20031436 20031826 -104044346 + IAPLTR3-int LTR ERVK 5098 5465 -2116 3 737 690 264 32 43 chr9 20031871 20032152 -104044020 + IAPLTR3-int LTR ERVK 5466 5743 -799 3 737 6031 202 14 8 chr9 20032387 20033535 -104042637 + IAPLTR3-int LTR ERVK 5750 6801 -20 3 737 1850 97 117 0 chr9 20033535 20033844 -104042328 + IAPLTR4 LTR ERVK 1 345 0 3 737 3441 185 11 16 chr9 20033846 20034539 -104041633 - L1_Mur2 LINE L1 -2977 2900 2211 3 737 1120 166 79 96 chr9 20034535 20034767 -104041405 - L1_Mur2 LINE L1 -4084 1793 1585 3 737 636 71 0 0 chr9 20034767 20034852 -104041320 + B1_Mus2 SINE Alu 57 141 -6 3 737 1120 166 79 96 chr9 20034852 20034926 -104041246 - L1_Mur2 LINE L1 -4084 1584 1517 3 737 333 0 0 0 chr9 20034926 20034963 -104041209 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 4 737 1034 204 50 139 chr9 20034963 20035490 -104040682 - L1_Mur2 LINE L1 -4361 1516 892 3 737 2367 126 27 25 chr9 20035492 20035900 -104040272 - RLTR9E LTR ERVK 0 409 1 4 737 495 88 14 58 chr9 20035904 20035990 -104040182 - ETnERV2-int LTR ERVK -5 7401 7331 4 737 12702 98 12 17 chr9 20036195 20038004 -104038168 - ETnERV2-int LTR ERVK -984 6422 4622 4 737 1448 124 0 0 chr9 20038002 20038204 -104037968 + ETnERV2-int LTR ERVK 4410 4611 -2795 4 737 5636 152 44 35 chr9 20038204 20040174 -104035998 - L1Md_F LINE L1 -4087 1796 1 4 737 513 182 0 40 chr9 20040187 20040313 -104035859 - L1_Rod LINE L1 -2643 3204 3084 4 737 350 320 116 9 chr9 20040314 20040590 -104035582 + L1MA5 LINE L1 5600 5935 -365 4 737 537 44 0 0 chr9 20040598 20040666 -104035506 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 737 382 157 29 0 chr9 20040684 20040754 -104035418 + Lx8 LINE L1 6380 6451 -1022 4 737 298 228 0 0 chr9 20040770 20040827 -104035345 - Lx8 LINE L1 -980 6493 6437 4 737 207 0 0 0 chr9 20040830 20040853 -104035319 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 737 230 204 108 88 chr9 20041137 20041239 -104034933 - Lx9 LINE L1 -1 7643 7540 5 737 386 185 25 0 chr9 20042746 20042827 -104033345 + Lx9 LINE L1 7394 7476 -168 5 737 694 109 17 0 chr9 20042827 20042946 -104033226 + (GA)n Simple_repeat Simple_repeat 1 121 0 5 737 386 235 20 0 chr9 20042946 20043044 -104033128 + Lx9 LINE L1 7535 7634 -10 5 737 239 274 44 67 chr9 20043126 20043216 -104032956 - Arthur1B DNA Tip100 -443 782 695 5 737 26 30 0 0 chr9 20043272 20043305 -104032867 + AT_rich Low_complexity Low_complexity 1 33 0 5 737 21 57 0 0 chr9 20043586 20043621 -104032551 + AT_rich Low_complexity Low_complexity 1 35 0 5 737 763 291 73 8 chr9 20043998 20044355 -104031817 + L1MA4A LINE L1 5523 5902 -401 5 737 233 230 146 18 chr9 20045068 20045232 -104030940 - Lx7 LINE L1 0 7696 7512 5 737 861 76 0 0 chr9 20045244 20045362 -104030810 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 5 737 303 371 0 37 chr9 20045475 20045584 -104030588 + B4A SINE B4 44 148 -144 5 737 1354 245 6 49 chr9 20045639 20045987 -104030185 - Lx5 LINE L1 -3 7047 6715 6 737 2575 193 48 125 chr9 20045982 20046513 -104029659 - L1_Mur2 LINE L1 -1895 3982 3478 6 737 1414 44 22 6 chr9 20046513 20046696 -104029476 - L1_Mus1 LINE L1 -2 6565 6380 6 737 2575 193 48 125 chr9 20046696 20046849 -104029323 - L1_Mur2 LINE L1 -2400 3477 3335 6 737 1639 127 30 4 chr9 20046849 20047117 -104029055 - Lx LINE L1 -7 6647 6373 6 737 2575 193 48 125 chr9 20047117 20047237 -104028935 - L1_Mur2 LINE L1 -2543 3334 3239 6 737 189 0 0 0 chr9 20047254 20047275 -104028897 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 737 269 64 0 41 chr9 20047307 20047356 -104028816 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 737 535 74 0 21 chr9 20047456 20047552 -104028620 + (TTGG)n Simple_repeat Simple_repeat 2 95 0 6 737 365 214 8 31 chr9 20047571 20047730 -104028442 - L1_Mur2 LINE L1 -2606 3271 3112 6 737 282 139 23 11 chr9 20047730 20047817 -104028355 + T-rich Low_complexity Low_complexity 2 89 0 6 737 7565 53 36 0 chr9 20047839 20047907 -104028265 - L1Md_F2 LINE L1 0 6582 6512 6 737 188 67 0 32 chr9 20047907 20047938 -104028234 + (CCCA)n Simple_repeat Simple_repeat 4 33 0 6 737 33833 68 13 5 chr9 20047938 20053758 -104022414 - L1Md_F2 LINE L1 -71 6511 647 6 92 2376 132 33 2 chr9 20053767 20054162 -104022010 - Lx2 LINE L1 0 6997 6591 7 738 530 200 37 0 chr9 20054162 20054297 -104021875 - L1_Mur2 LINE L1 -2747 3133 2994 6 738 5483 227 32 7 chr9 20054317 20055540 -104020632 - Lx5 LINE L1 -4 7046 5793 7 738 4177 137 146 1 chr9 20055538 20056328 -104019844 + L1_Mur2 LINE L1 4885 5788 -89 7 738 4481 179 28 7 chr9 20056327 20057234 -104018938 - L1_Mur2 LINE L1 -2875 3002 2077 6 738 477 190 70 0 chr9 20057236 20057336 -104018836 - U6 snRNA snRNA 0 107 1 7 738 28 29 0 0 chr9 20057342 20057377 -104018795 + AT_rich Low_complexity Low_complexity 1 35 0 7 738 1768 170 15 50 chr9 20057965 20058306 -104017866 + ORR1A4 LTR MaLR 1 329 0 7 738 3209 57 2 0 chr9 20058417 20058819 -104017353 - L1_Mus2 LINE L1 0 6566 6164 7 738 267 31 0 0 chr9 20058851 20058883 -104017289 + (CTTG)n Simple_repeat Simple_repeat 2 33 0 7 738 22 35 0 0 chr9 20058961 20058990 -104017182 + AT_rich Low_complexity Low_complexity 1 29 0 7 738 438 325 0 0 chr9 20059055 20059169 -104017003 + B3 SINE B2 2 115 -101 7 738 251 180 214 9 chr9 20059488 20059600 -104016572 - Lx9 LINE L1 -1 7643 7509 8 738 814 182 13 20 chr9 20059620 20059771 -104016401 + Lx9 LINE L1 7284 7433 -211 8 738 944 350 101 19 chr9 20059788 20060165 -104016007 - Lx8 LINE L1 -6 7467 7046 8 738 582 28 0 0 chr9 20060165 20060237 -104015935 + (TG)n Simple_repeat Simple_repeat 1 72 0 8 738 944 350 101 19 chr9 20060237 20060530 -104015642 - Lx8 LINE L1 -428 7045 6743 8 738 6268 228 95 42 chr9 20060557 20062785 -104013387 - L1_Rod LINE L1 -135 5712 3367 8 738 4405 167 50 2 chr9 20062832 20063668 -104012504 - Lx3C LINE L1 -1 6975 6100 8 738 461 162 0 24 chr9 20063669 20063751 -104012421 - L1_Mur2 LINE L1 -1135 4742 4663 8 738 706 299 40 50 chr9 20065531 20065953 -104010219 + L1MA5 LINE L1 5507 5924 -376 8 738 25 31 0 0 chr9 20066116 20066148 -104010024 + AT_rich Low_complexity Low_complexity 1 32 0 8 738 182 344 83 0 chr9 20066149 20066245 -104009927 - MER5B DNA MER1_type -50 128 25 8 738 2649 330 51 17 chr9 20066426 20067499 -104008673 - Lx8 LINE L1 -132 7341 6232 9 738 1108 69 7 0 chr9 20067567 20067711 -104008461 - B1_Mm SINE Alu -2 145 1 9 738 21 0 0 0 chr9 20067875 20067896 -104008276 + AT_rich Low_complexity Low_complexity 1 21 0 9 738 368 286 45 8 chr9 20068131 20068265 -104007907 - Lx7 LINE L1 -1769 5927 5789 9 738 2061 181 21 8 chr9 20068277 20068666 -104007506 - ORR1B1 LTR MaLR 0 394 1 9 738 1565 226 26 99 chr9 20068670 20069054 -104007118 - L1_Mur3 LINE L1 -1677 4203 3838 9 738 4729 51 5 3 chr9 20069054 20069645 -104006527 - L1Md_F2 LINE L1 0 6582 5991 9 738 1565 226 26 99 chr9 20069645 20069795 -104006377 - L1_Mur3 LINE L1 -2043 3837 3708 9 738 690 198 85 48 chr9 20069795 20069960 -104006212 - MTD LTR MaLR -53 366 196 9 738 6823 113 27 7 chr9 20069980 20070995 -104005177 - Lx LINE L1 -3 6651 5617 9 738 532 105 35 0 chr9 20070975 20071061 -104005111 - L1_Mus3 LINE L1 -699 5939 5851 9 738 1971 118 9 15 chr9 20071057 20071393 -104004779 - MusHAL1 LINE L1 -411 2301 1968 1 738 1616 159 88 59 chr9 20071385 20071725 -104004447 + L1_Mus2 LINE L1 6211 6560 -6 1 738 738 0 0 0 chr9 20071728 20071810 -104004362 + (GAAAA)n Simple_repeat Simple_repeat 2 83 0 1 738 1612 109 8 8 chr9 20071813 20072072 -104004100 - MusHAL1 LINE L1 -745 1967 1709 1 738 1548 93 0 0 chr9 20072087 20072302 -104003870 - L1_Mus1 LINE L1 0 6567 6353 1 738 1867 92 0 0 chr9 20072302 20072552 -104003620 - L1_Mus1 LINE L1 -372 6195 5946 1 738 21912 113 3 10 chr9 20072549 20076261 -103999911 - L1VL4 LINE L1 -1345 4538 855 1 738 416 188 40 30 chr9 20076313 20076412 -103999760 - L1_Mur3 LINE L1 -1358 4522 4423 1 738 1109 162 164 35 chr9 20076409 20076665 -103999507 - Lx2B LINE L1 0 7000 6712 1 738 4229 191 27 32 chr9 20076668 20076963 -103999209 - L1_Mur3 LINE L1 -1459 4421 4125 1 738 1878 99 28 28 chr9 20076963 20077285 -103998887 - RLTRETN_Mm LTR ERVK 0 322 1 1 738 4229 191 27 32 chr9 20077285 20078015 -103998157 - L1_Mur3 LINE L1 -1756 4124 3401 1 738 3068 227 107 13 chr9 20078026 20078777 -103997395 - Lx5 LINE L1 -9 7041 6221 1 738 2120 160 6 6 chr9 20078783 20079141 -103997031 - L1_Mur2 LINE L1 -108 5769 5412 1 738 602 242 70 30 chr9 20079154 20079362 -103996810 + RLTR20A LTR ERVK 13 240 -337 1 738 540 0 0 0 chr9 20079362 20079422 -103996750 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 738 602 284 79 69 chr9 20079422 20079520 -103996652 + RLTR20A LTR ERVK 218 320 -243 1 738 2318 55 0 7 chr9 20079916 20080209 -103995963 - L1Md_F2 LINE L1 -12 6570 6280 1 738 279 0 0 0 chr9 20080271 20080302 -103995870 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 738 4163 191 47 42 chr9 20080535 20081602 -103994570 + MYSERV16_I-int LTR ERVK 1 1378 -1464 1 738 6241 148 53 12 chr9 20081607 20082815 -103993357 + MYSERV16_I-int LTR ERVK 1067 2323 -3 1 738 1670 241 64 42 chr9 20082819 20083294 -103992878 + RLTR20A2 LTR ERVK 1 482 -96 1 738 441 50 0 0 chr9 20083294 20083354 -103992818 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 738 1670 233 58 31 chr9 20083354 20083445 -103992727 + RLTR20A2 LTR ERVK 483 578 0 1 738 2024 183 135 2 chr9 20083445 20083722 -103992450 - L1_Mur2 LINE L1 -460 5417 5121 1 738 264 30 0 0 chr9 20083722 20083755 -103992417 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1 738 2024 183 135 2 chr9 20083755 20083960 -103992212 - L1_Mur2 LINE L1 -757 5120 4872 1 738 812 206 146 5 chr9 20084003 20084078 -103992094 + Lx7 LINE L1 7447 7543 -153 1 738 209 33 33 0 chr9 20084078 20084108 -103992064 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1 738 812 206 146 5 chr9 20084108 20084251 -103991921 + Lx7 LINE L1 7544 7695 -1 1 738 493 55 14 0 chr9 20084387 20084460 -103991712 + L1_Mus1 LINE L1 6494 6567 0 1 738 237 211 0 0 chr9 20084588 20084645 -103991527 + GA-rich Low_complexity Low_complexity 2 58 0 1 738 201 74 0 0 chr9 20084951 20084978 -103991194 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 738 513 0 0 0 chr9 20084978 20085034 -103991138 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 738 357 24 0 0 chr9 20085597 20085639 -103990533 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1 738 22 35 0 0 chr9 20086416 20086445 -103989727 + AT_rich Low_complexity Low_complexity 1 29 0 1 738 180 77 0 0 chr9 20086938 20086964 -103989208 + (GGA)n Simple_repeat Simple_repeat 3 28 0 1 738 276 30 0 0 chr9 20087185 20087218 -103988954 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 738 324 0 0 0 chr9 20087218 20087253 -103988919 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 738 685 230 213 4 chr9 20087353 20087606 -103988566 + Lx9 LINE L1 7331 7636 -8 1 738 23 0 0 0 chr9 20087913 20087936 -103988236 + AT_rich Low_complexity Low_complexity 1 23 0 1 738 21 0 0 0 chr9 20087943 20087964 -103988208 + AT_rich Low_complexity Low_complexity 1 21 0 1 738 217 311 76 21 chr9 20089478 20089579 -103986593 - MIR SINE MIR -154 114 1 1 738 189 171 0 0 chr9 20089623 20089658 -103986514 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 738 234 81 0 0 chr9 20091092 20091129 -103985043 + (A)n Simple_repeat Simple_repeat 1 37 0 1 738 406 342 43 0 chr9 20091340 20091457 -103984715 + RSINE1 SINE B4 44 165 0 1 738 373 116 0 28 chr9 20091479 20091550 -103984622 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 738 236 283 35 17 chr9 20091593 20091708 -103984464 - L1_Rod LINE L1 -6510 662 546 1 738 8789 16 0 0 chr9 20091789 20093249 -103982923 - L1Md_A LINE L1 0 6582 5123 1 738 7171 26 30 1 chr9 20093249 20094127 -103982045 - L1Md_A LINE L1 -5619 1105 203 1 738 448 330 115 17 chr9 20095414 20095648 -103980524 - Lx8 LINE L1 -168 7305 7049 1 738 399 235 613 53 chr9 20095701 20095815 -103980357 + ORR1D1 LTR MaLR 1 177 -197 1 738 1092 90 0 0 chr9 20095815 20095982 -103980190 + (TC)n Simple_repeat Simple_repeat 2 168 0 1 738 399 282 172 17 chr9 20095982 20096146 -103980026 + ORR1D1 LTR MaLR 178 370 -4 1 738 204 214 0 0 chr9 20096210 20096266 -103979906 + T-rich Low_complexity Low_complexity 2 57 0 1 738 834 191 129 121 chr9 20096271 20096551 -103979621 + ORR1D1-int LTR MaLR 53 334 -1036 1 738 8109 29 0 1 chr9 20096563 20097493 -103978679 + RLTR13B3 LTR ERVK 1 929 0 1 738 11465 40 0 3 chr9 20097494 20098891 -103977281 + L1Md_F2 LINE L1 4194 5586 -297 1 738 8006 47 1 19 chr9 20098891 20099905 -103976267 + L1Md_F2 LINE L1 5587 6582 0 1 738 1674 168 7 116 chr9 20099905 20100069 -103976103 + L1_Mur1 LINE L1 4995 5160 -726 1 738 2405 80 106 14 chr9 20100069 20100438 -103975734 + RLTR9D LTR ERVK 1 403 0 1 738 1674 168 7 116 chr9 20100438 20100678 -103975494 + L1_Mur1 LINE L1 5161 5355 -531 1 738 6933 143 44 77 chr9 20100680 20102646 -103973526 + Lx3C LINE L1 5088 6974 -2 1 738 21 0 0 0 chr9 20102713 20102734 -103973438 + AT_rich Low_complexity Low_complexity 1 21 0 1 738 22 35 0 0 chr9 20103699 20103728 -103972444 + AT_rich Low_complexity Low_complexity 1 29 0 1 738 866 272 80 77 chr9 20104063 20104389 -103971783 + Lx8 LINE L1 6798 7124 -349 1 738 298 151 41 0 chr9 20104442 20104515 -103971657 + Lx8 LINE L1 7395 7470 -3 1 738 1151 77 0 13 chr9 20105718 20105875 -103970297 + Lx3_Mus LINE L1 6518 6672 -337 1 738 238 128 0 0 chr9 20106144 20106183 -103969989 - BC1_Mm scRNA scRNA -112 40 2 1 738 394 274 66 0 chr9 20106380 20106486 -103969686 + PB1D9 SINE Alu 1 113 -7 1 738 222 216 0 0 chr9 20106497 20106548 -103969624 + A-rich Low_complexity Low_complexity 4 54 0 1 738 476 299 63 25 chr9 20106609 20106767 -103969405 - RSINE1 SINE B4 0 165 2 1 738 243 322 11 11 chr9 20107254 20107342 -103968830 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 738 21 0 0 0 chr9 20107596 20107617 -103968555 + AT_rich Low_complexity Low_complexity 1 21 0 1 738 6741 184 21 30 chr9 20107814 20109333 -103966839 + Lx LINE L1 4136 5646 -1008 1 738 2491 240 58 39 chr9 20109496 20110182 -103965990 + Lx7 LINE L1 6988 7686 -10 1 738 947 173 0 13 chr9 20110198 20110356 -103965816 + B2_Mm2 SINE B2 2 157 -38 1 738 14494 158 5 17 chr9 20110356 20112047 -103964125 + Lx2 LINE L1 2210 3878 -2008 1 738 2914 68 29 5 chr9 20112047 20112432 -103963740 + MTA_Mm LTR MaLR 1 394 -2 1 738 14494 168 14 15 chr9 20112432 20114000 -103962172 + Lx2 LINE L1 3879 5467 -419 1 738 229 237 16 33 chr9 20114000 20114061 -103962111 - RMER17B LTR ERVK 0 958 899 1 738 2855 204 54 92 chr9 20114055 20114834 -103961338 - RMER17B LTR ERVK -209 749 1 1 738 6885 107 8 13 chr9 20114834 20116027 -103960145 + Lx2 LINE L1 5460 6645 -352 1 738 1351 134 5 0 chr9 20116025 20116241 -103959931 + Lx2 LINE L1 6775 6991 -6 1 738 486 49 0 0 chr9 20116252 20116313 -103959859 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 738 298 337 72 34 chr9 20116338 20116995 -103959177 + L1M3d LINE L1 676 1357 -4534 1 738 214 348 54 0 chr9 20117144 20117236 -103958936 + MER5B DNA MER1_type 36 132 -46 1 738 415 329 93 6 chr9 20117244 20117406 -103958766 - B3 SINE B2 -1 215 40 1 738 1013 67 52 7 chr9 20118164 20118300 -103957872 + B1_Mm SINE Alu 1 142 -5 1 738 202 182 0 35 chr9 20119536 20119593 -103956579 + T-rich Low_complexity Low_complexity 1 55 0 1 738 650 237 57 7 chr9 20119739 20119879 -103956293 + B1_Mur2 SINE Alu 1 147 -2 1 738 583 134 10 10 chr9 20119910 20120008 -103956164 + L1_Mus1 LINE L1 410 507 -6131 1 738 30890 81 18 4 chr9 20120004 20125688 -103950484 + L1_Mus1 LINE L1 639 6403 -164 1 738 3075 64 5 10 chr9 20125688 20126085 -103950087 + MTA_Mm LTR MaLR 2 396 0 1 738 6031 87 0 8 chr9 20126085 20126127 -103950045 + L1_Mus1 LINE L1 6404 6440 -127 1 738 36802 6 0 0 chr9 20126126 20131695 -103944477 + L1Md_A LINE L1 17 5586 -297 1 738 9075 2 0 0 chr9 20131695 20132691 -103943481 + L1Md_A LINE L1 5587 6582 0 1 738 867 116 22 0 chr9 20132694 20132832 -103943340 + L1_Mus1 LINE L1 6427 6567 0 1 738 566 223 29 0 chr9 20133644 20133783 -103942389 + Lx8 LINE L1 6391 6533 -940 1 738 1728 218 67 11 chr9 20133786 20134231 -103941941 + Lx7 LINE L1 5588 6057 -1639 1 738 637 241 50 50 chr9 20134224 20134526 -103941646 + Lx9 LINE L1 5808 6109 -1535 1 738 1803 223 20 12 chr9 20134586 20134990 -103941182 + Lx9 LINE L1 6307 6713 -931 1 738 972 186 244 18 chr9 20135013 20135353 -103940819 + Lx9 LINE L1 7226 7642 -2 1 738 21 36 0 0 chr9 20135388 20135416 -103940756 + AT_rich Low_complexity Low_complexity 1 28 0 1 738 358 280 43 86 chr9 20135652 20135690 -103940482 - PB1D10 SINE Alu -1 116 87 1 738 4900 115 94 19 chr9 20135690 20136110 -103940062 + RMER17A2 LTR ERVK 1 445 -461 1 738 1029 89 0 0 chr9 20136110 20136256 -103939916 + (TC)n Simple_repeat Simple_repeat 1 146 0 1 738 4900 115 94 19 chr9 20136256 20136678 -103939494 + RMER17A2 LTR ERVK 446 905 -1 1 738 358 280 43 86 chr9 20136678 20136756 -103939416 - PB1D10 SINE Alu -31 86 5 1 738 552 299 55 14 chr9 20137260 20137406 -103938766 + RSINE1 SINE B4 14 165 0 1 738 225 154 0 0 chr9 20137406 20137445 -103938727 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 738 870 62 0 0 chr9 20137854 20137967 -103938205 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 738 521 271 89 44 chr9 20138392 20138550 -103937622 + B3A SINE B2 1 165 -33 1 738 348 64 0 0 chr9 20138554 20138601 -103937571 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 738 505 311 55 0 chr9 20138610 20138793 -103937379 - B3A SINE B2 0 198 6 1 738 27 0 0 0 chr9 20138807 20138834 -103937338 + AT_rich Low_complexity Low_complexity 1 27 0 1 738 634 255 33 22 chr9 20139561 20139834 -103936338 + L1MA5 LINE L1 5993 6268 -32 1 738 210 91 0 0 chr9 20139936 20139969 -103936203 + (GTTTG)n Simple_repeat Simple_repeat 4 36 0 1 738 315 164 0 0 chr9 20139968 20140029 -103936143 + (TTA)n Simple_repeat Simple_repeat 2 62 0 1 738 310 330 25 42 chr9 20140044 20140164 -103936008 - RSINE1 SINE B4 -45 120 3 1 738 389 279 9 26 chr9 20140164 20140278 -103935894 - PB1D10 SINE Alu -2 115 4 1 738 337 302 10 10 chr9 20141156 20141253 -103934919 + PB1D10 SINE Alu 21 117 0 1 738 277 328 0 0 chr9 20141257 20141315 -103934857 + RSINE1 SINE B4 4 61 -104 1 738 1628 263 72 60 chr9 20141326 20141886 -103934286 + MTC-int LTR MaLR 95 677 -581 1 738 1395 114 25 50 chr9 20141886 20142127 -103934045 - L1Md_F2 LINE L1 -12 6570 6336 1 738 1091 273 57 66 chr9 20142127 20142624 -103933548 + MTC-int LTR MaLR 678 1648 -315 1 738 450 254 51 39 chr9 20142598 20142727 -103933445 + MTD LTR MaLR 222 340 -79 1 738 552 254 61 22 chr9 20142734 20142915 -103933257 - Lx6 LINE L1 -136 7324 7137 1 738 22762 32 118 0 chr9 20142917 20146016 -103930156 + L1Md_F2 LINE L1 2123 5585 -298 2 738 8025 43 10 2 chr9 20146017 20146993 -103929179 + L1Md_F2 LINE L1 5587 6570 -12 2 738 9071 150 78 62 chr9 20146993 20148436 -103927736 + MusHAL1 LINE L1 224 1687 -1025 2 738 921 105 23 12 chr9 20148436 20148609 -103927563 + (GAGAA)n Simple_repeat Simple_repeat 3 177 0 2 738 9071 150 78 62 chr9 20148609 20149617 -103926555 + MusHAL1 LINE L1 1688 2712 0 2 738 411 290 108 20 chr9 20149661 20149911 -103926261 + L1MA8 LINE L1 3911 4182 -1961 2 738 227 292 112 6 chr9 20149953 20150132 -103926040 + L1MA8 LINE L1 5553 5750 -541 2 738 183 194 56 0 chr9 20150190 20150226 -103925946 - MIR SINE MIR -133 75 38 2 738 256 217 0 16 chr9 20150235 20150296 -103925876 + (CATA)n Simple_repeat Simple_repeat 4 63 0 2 738 334 255 0 38 chr9 20150354 20150460 -103925712 + L1MA8 LINE L1 5830 5931 -360 2 738 609 192 133 0 chr9 20150464 20150584 -103925588 + B1_Mur2 SINE Alu 1 136 -13 2 738 1407 166 119 32 chr9 20151296 20151721 -103924451 - RMER17C LTR ERVK -517 441 16 2 738 233 309 45 39 chr9 20151972 20152127 -103924045 - MurSatRep1 Unknown Unknown -260 1877 1722 2 738 246 270 45 45 chr9 20152226 20152358 -103923814 - MMSAT4 Satellite Satellite 0 168 37 2 738 285 338 19 24 chr9 20152322 20152534 -103923638 - MurSatRep1 Unknown Unknown -190 1947 1737 2 738 230 305 25 25 chr9 20152735 20152856 -103923316 - MMSAT4 Satellite Satellite -5 163 43 2 738 247 294 32 32 chr9 20153066 20153189 -103922983 - MMSAT4 Satellite Satellite 0 168 46 2 738 633 171 105 79 chr9 20154300 20154349 -103921823 + B3A SINE B2 1 49 -149 2 738 450 0 0 0 chr9 20154349 20154399 -103921773 + (CATA)n Simple_repeat Simple_repeat 2 51 0 2 738 633 171 105 79 chr9 20154399 20154539 -103921633 + B3A SINE B2 50 195 -3 2 738 22 35 0 0 chr9 20154907 20154936 -103921236 + GC_rich Low_complexity Low_complexity 1 29 0 2 738 619 259 44 0 chr9 20155276 20155411 -103920761 + RSINE1 SINE B4 3 143 -22 2 738 584 232 48 8 chr9 20155485 20155611 -103920561 - B1_Mm SINE Alu -12 135 5 2 738 180 343 68 39 chr9 20155666 20155769 -103920403 - MER5A DNA MER1_type -21 168 63 2 738 230 295 45 11 chr9 20155817 20155906 -103920266 + RMER17D2 LTR ERVK 244 335 -474 2 738 468 178 168 0 chr9 20155926 20156027 -103920145 - PB1D9 SINE Alu 0 120 3 2 738 437 255 28 38 chr9 20156093 20156199 -103919973 + RSINE1 SINE B4 61 165 0 2 738 457 244 36 36 chr9 20156275 20156415 -103919757 - MurSatRep1 Unknown Unknown -1392 745 606 2 738 354 340 0 0 chr9 20156595 20156692 -103919480 - B4A SINE B4 -108 184 88 2 738 428 201 2 12 chr9 20156980 20157075 -103919097 - MTEa LTR MaLR -8 371 263 2 738 498 114 0 0 chr9 20157395 20157474 -103918698 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 738 294 167 0 53 chr9 20157729 20157786 -103918386 - ORR1E LTR MaLR 0 379 326 2 738 1078 213 35 0 chr9 20157788 20157990 -103918182 + B3 SINE B2 1 209 -7 2 738 1048 231 29 21 chr9 20158174 20158413 -103917759 - ORR1E LTR MaLR -115 244 4 2 738 505 285 0 8 chr9 20158768 20158892 -103917280 + B3A SINE B2 2 124 -74 2 738 1234 91 5 5 chr9 20158892 20159079 -103917093 + Lx4B LINE L1 5656 5842 -1216 2 738 33891 47 0 3 chr9 20159080 20164546 -103911626 + L1Md_T LINE L1 44 5589 -297 2 738 8474 32 0 1 chr9 20164546 20165543 -103910629 + L1Md_T LINE L1 5590 6585 0 2 738 7595 132 19 29 chr9 20165546 20166789 -103909383 + Lx4B LINE L1 5827 7057 -1 2 738 4572 166 41 9 chr9 20166785 20167690 -103908482 + L1_Mur3 LINE L1 2897 3830 -2050 2 738 2213 153 5 48 chr9 20167739 20168136 -103908036 + RLTR14 LTR ERV1 3 382 0 2 738 439 205 111 32 chr9 20168258 20168298 -103907874 + RLTR42-int LTR ERVK 1106 1157 -4365 2 738 503 238 218 57 chr9 20168298 20168615 -103907557 + RLTR9A LTR ERVK 1 368 0 2 738 439 205 111 32 chr9 20168615 20168700 -103907472 + RLTR42-int LTR ERVK 1158 1241 -4281 2 738 458 17 0 17 chr9 20169027 20169087 -103907085 + (TTG)n Simple_repeat Simple_repeat 2 60 0 2 738 669 219 13 64 chr9 20169087 20169233 -103906939 - B1_Mur1 SINE Alu -10 139 1 2 738 625 134 50 8 chr9 20171330 20171450 -103904722 + RLTR41 LTR ERV1 16 140 -306 2 738 1285 170 72 4 chr9 20171568 20171804 -103904368 + RLTR41 LTR ERV1 195 446 0 2 738 4553 10 0 0 chr9 20172208 20172701 -103903471 - MT2_Mm LTR ERVL 0 493 1 2 738 321 0 0 0 chr9 20172701 20172739 -103903433 - MERVL-int LTR ERVL 0 5485 5448 2 738 344 179 46 35 chr9 20172739 20172826 -103903346 - ORR1A3-int LTR MaLR -1323 640 553 2 738 41467 15 14 0 chr9 20172826 20178113 -103898059 - MERVL-int LTR ERVL -125 5360 1 2 738 4553 10 0 0 chr9 20178113 20178606 -103897566 - MT2_Mm LTR ERVL 0 493 1 2 738 389 218 11 22 chr9 20179936 20180025 -103896147 - B3 SINE B2 -128 88 1 2 738 255 173 0 96 chr9 20180070 20180153 -103896019 + PB1D10 SINE Alu 42 116 -1 2 738 259 224 128 12 chr9 20180166 20180252 -103895920 - HERVL74-int LTR ERVL -4243 1442 1347 2 738 425 204 40 8 chr9 20180295 20180403 -103895769 + B1_Mur4 SINE Alu 1 150 0 2 738 349 263 11 0 chr9 20180407 20180502 -103895670 - HERVL74-int LTR ERVL -4380 1305 1210 2 738 338 284 0 0 chr9 20180831 20180912 -103895260 + ID4 SINE ID 3 83 0 2 738 207 250 0 0 chr9 20180912 20180956 -103895216 + GA-rich Low_complexity Low_complexity 1 44 0 2 738 262 236 0 0 chr9 20181254 20181309 -103894863 + L1MA5A LINE L1 6045 6099 -198 2 738 488 208 21 10 chr9 20181349 20181446 -103894726 + B3A SINE B2 1 98 -100 2 738 430 304 39 58 chr9 20181470 20181676 -103894496 + RLTR25B LTR ERVK 1 202 -826 2 738 5851 73 42 65 chr9 20182315 20182810 -103893362 + Lx2 LINE L1 756 1272 -5385 2 738 1237 41 0 0 chr9 20182810 20182957 -103893215 + B1_Mus2 SINE Alu 1 147 0 2 738 5851 151 22 103 chr9 20182957 20183532 -103892640 + Lx2 LINE L1 1264 1771 -4112 2 738 1219 54 0 0 chr9 20183532 20183679 -103892493 - B1_Mus1 SINE Alu -1 147 1 2 738 5851 151 22 103 chr9 20183679 20183724 -103892448 + Lx2 LINE L1 1772 1786 -4097 2 738 2760 30 12 9 chr9 20183724 20184059 -103892113 - L1Md_F3 LINE L1 -2 6582 6247 2 738 5851 151 22 103 chr9 20184059 20184745 -103891427 + Lx2 LINE L1 1787 2470 -3413 2 738 6943 124 47 16 chr9 20184744 20184871 -103891301 + Lx2 LINE L1 5545 5694 -189 2 92 2881 166 34 27 chr9 20184871 20185428 -103890744 + RLTR31_Mm LTR ERVK 1 561 0 2 739 6943 105 29 13 chr9 20185428 20186373 -103889799 + Lx2 LINE L1 5695 6643 -354 2 739 1244 121 35 15 chr9 20186373 20186575 -103889597 + Lx2 LINE L1 6775 6980 -17 2 739 22 56 0 0 chr9 20186799 20186835 -103889337 + AT_rich Low_complexity Low_complexity 1 36 0 2 739 287 180 16 0 chr9 20186962 20187023 -103889149 + B3 SINE B2 155 216 0 2 739 375 267 66 12 chr9 20187031 20187198 -103888974 + L1MA5 LINE L1 6122 6297 -3 2 739 473 314 128 12 chr9 20187493 20187751 -103888421 + HERVL74-int LTR ERVL 1208 1495 -4190 2 739 507 296 88 19 chr9 20187765 20188072 -103888100 + HERVL74-int LTR ERVL 1518 1845 -3840 2 739 306 256 91 23 chr9 20188981 20189113 -103887059 + RMER5 LTR ERV1 394 534 0 2 739 383 210 130 32 chr9 20190181 20190304 -103885868 + RSINE1 SINE B4 3 137 -28 2 739 2784 66 16 3 chr9 20190373 20190751 -103885421 - L1_Mus3 LINE L1 -5 6633 6251 2 739 230 326 103 21 chr9 20190767 20190864 -103885308 + B1_Mur1 SINE Alu 16 120 -29 2 739 1132 268 77 26 chr9 20191314 20191663 -103884509 + Lx8 LINE L1 6736 7102 -371 2 739 2321 234 35 15 chr9 20191736 20192273 -103883899 + RMER15 LTR ERVL 27 574 -1 2 739 5634 107 59 2 chr9 20192335 20193188 -103882984 + Lx2 LINE L1 5857 6757 -240 2 739 731 232 57 31 chr9 20193188 20193415 -103882757 - LTRIS4 LTR ERV1 0 507 275 2 739 1504 118 33 29 chr9 20193658 20193903 -103882269 + Lx2 LINE L1 6752 6997 0 2 739 232 221 178 110 chr9 20194050 20194070 -103882102 - RMER21B LTR ERV1 -273 569 555 2 739 1094 267 62 31 chr9 20194070 20194456 -103881716 - RMER10B LTR ERVL 0 398 1 2 739 232 221 178 110 chr9 20194456 20194576 -103881596 - RMER21B LTR ERV1 -288 554 414 2 739 594 75 0 102 chr9 20194576 20194694 -103881478 - L1Md_F2 LINE L1 -2 6580 6475 2 739 232 221 178 110 chr9 20194694 20194715 -103881457 - RMER21B LTR ERV1 -429 413 396 2 739 446 255 0 10 chr9 20194878 20194977 -103881195 - RMER4B LTR ERVK -143 442 345 2 739 2448 192 66 43 chr9 20195018 20195595 -103880577 + RMER20B LTR ERVK 14 603 -24 2 739 1710 196 44 12 chr9 20195599 20195940 -103880232 - RodERV21-int LTR ERV1 -199 4792 4441 2 739 286 302 35 28 chr9 20195936 20196079 -103880093 - RLTR14-int LTR ERV1 -283 5034 4891 2 739 2754 162 33 24 chr9 20196094 20196953 -103879219 + RLTR25A LTR ERVK 3 1019 -9 2 739 3231 152 36 84 chr9 20197082 20197406 -103878766 + RLTR26 LTR ERVK 1 325 -317 2 739 1710 21 0 0 chr9 20197406 20197598 -103878574 + B2_Mm1a SINE B2 1 192 -1 2 739 3231 152 36 84 chr9 20197598 20197939 -103878233 + RLTR26 LTR ERVK 326 634 -8 2 739 616 199 386 22 chr9 20197950 20198217 -103877955 - RLTR19-int LTR ERVK -2339 3798 3435 2 739 1790 231 28 14 chr9 20198396 20198760 -103877412 - RodERV21-int LTR ERV1 -2541 2450 2082 2 739 304 266 101 126 chr9 20199060 20199104 -103877068 + B3 SINE B2 1 34 -182 2 739 1048 88 0 0 chr9 20199104 20199240 -103876932 + B1_Mus2 SINE Alu 2 137 -10 2 739 217 0 61 0 chr9 20199240 20199273 -103876899 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 739 304 266 101 126 chr9 20199273 20199386 -103876786 + B3 SINE B2 35 154 -62 2 739 3373 118 9 9 chr9 20199386 20199933 -103876239 + L1_Mur2 LINE L1 3767 4313 -1564 2 739 6037 153 9 134 chr9 20199932 20200291 -103875881 - L1_Mur1 LINE L1 -1260 4626 4290 2 739 5020 81 110 1 chr9 20200291 20200999 -103875173 - L1_Mus3 LINE L1 -8 6630 5846 2 739 6037 153 9 134 chr9 20200999 20201410 -103874762 - L1_Mur1 LINE L1 -1597 4289 3974 2 739 330 127 0 35 chr9 20201410 20201467 -103874705 - B2_Mm2 SINE B2 -94 101 47 2 739 6037 153 9 134 chr9 20201467 20201514 -103874658 - L1_Mur1 LINE L1 -1597 3973 3937 2 739 1048 120 65 12 chr9 20201514 20201683 -103874489 - B2_Mm1t SINE B2 -14 179 2 2 739 6037 153 9 134 chr9 20201683 20202274 -103873898 - L1_Mur1 LINE L1 -1950 3936 3343 2 739 2344 65 73 0 chr9 20202274 20202838 -103873334 + IAPEY3-int LTR ERVK 7076 7680 0 2 739 3105 37 0 3 chr9 20202838 20203193 -103872979 + IAPEY2_LTR LTR ERVK 1 354 -3 2 739 5013 41 2 0 chr9 20203198 20203778 -103872394 + RLTR44-int LTR ERVK 2232 2812 0 2 739 2677 114 25 14 chr9 20203778 20204222 -103871950 + RLTR44E LTR ERVK 1 449 -3 2 739 256 293 66 41 chr9 20204615 20204736 -103871436 - MMSAT4 Satellite Satellite -5 163 40 2 739 230 330 42 45 chr9 20205009 20205190 -103870982 - MurSatRep1 Unknown Unknown -85 2052 1846 2 739 266 263 48 48 chr9 20205190 20205314 -103870858 - MMSAT4 Satellite Satellite -5 163 40 2 739 230 330 42 45 chr9 20205314 20205401 -103870771 - MurSatRep1 Unknown Unknown -85 1845 1745 2 739 1632 16 22 0 chr9 20205433 20205616 -103870556 - B2_Mm1t SINE B2 -5 188 2 2 739 288 275 64 64 chr9 20205740 20205961 -103870211 - MMSAT4 Satellite Satellite -1 221 1 2 739 24 53 0 0 chr9 20207079 20207117 -103869055 + AT_rich Low_complexity Low_complexity 1 38 0 2 739 527 302 6 54 chr9 20207117 20207285 -103868887 - RSINE1 SINE B4 -4 161 2 2 739 348 24 0 0 chr9 20207298 20207339 -103868833 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2 739 1181 75 0 0 chr9 20207475 20207622 -103868550 + B1_Mus2 SINE Alu 1 147 0 2 739 632 124 9 0 chr9 20207623 20207728 -103868444 + (GA)n Simple_repeat Simple_repeat 2 107 0 2 739 916 248 5 24 chr9 20207737 20207948 -103868224 + B3 SINE B2 1 207 -9 2 739 288 0 0 0 chr9 20208060 20208092 -103868080 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 739 373 314 0 0 chr9 20208106 20208192 -103867980 - RSINE1 SINE B4 -77 88 3 3 739 570 254 156 5 chr9 20208264 20208450 -103867722 + B3 SINE B2 3 216 0 3 739 3788 77 4 2 chr9 20208713 20209206 -103866966 - L1_Mus3 LINE L1 -10 6628 6135 3 739 1405 106 0 0 chr9 20209206 20209404 -103866768 + L1_Mur3 LINE L1 4393 4590 -1290 3 739 319 207 0 0 chr9 20209439 20209497 -103866675 - ID_B1 SINE B4 -4 220 163 3 739 20827 22 16 3 chr9 20209497 20211858 -103864314 - MERVL-int LTR ERVL -3092 2393 1 3 739 3659 30 121 0 chr9 20211858 20212298 -103863874 - MT2_Mm LTR ERVL 0 493 1 3 739 405 0 0 0 chr9 20212382 20212427 -103863745 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 3 739 748 168 42 7 chr9 20212435 20212579 -103863593 + B1_Mur4 SINE Alu 1 149 -1 3 739 376 265 0 10 chr9 20212694 20212793 -103863379 - B1F SINE Alu 0 149 52 3 739 653 257 0 0 chr9 20213043 20213195 -103862977 - MurSatRep1 Unknown Unknown -1392 745 594 3 739 2771 50 15 133 chr9 20213349 20213807 -103862365 - L1_Mus2 LINE L1 -1 6565 6162 3 739 524 225 102 0 chr9 20213948 20214134 -103862038 + B3 SINE B2 9 213 -3 3 739 376 240 67 39 chr9 20214552 20214656 -103861516 + B1_Mur2 SINE Alu 43 149 0 3 739 401 333 30 8 chr9 20214964 20215097 -103861075 + RSINE1 SINE B4 17 152 -13 3 739 282 29 0 0 chr9 20215124 20215159 -103861013 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 739 23 0 0 0 chr9 20215227 20215250 -103860922 + AT_rich Low_complexity Low_complexity 1 23 0 3 739 276 290 0 0 chr9 20215259 20215321 -103860851 - RSINE1 SINE B4 -93 72 11 3 739 331 281 90 0 chr9 20215454 20215543 -103860629 + B1F2 SINE Alu 1 97 -52 3 739 2092 144 97 43 chr9 20215573 20216038 -103860134 + ORR1B1-int LTR MaLR 133 622 -887 3 739 797 94 198 51 chr9 20216043 20216200 -103859972 + B2_Mm2 SINE B2 1 180 -15 3 739 569 185 8 0 chr9 20216209 20216328 -103859844 + GA-rich Low_complexity Low_complexity 1 120 0 3 739 1263 165 261 0 chr9 20216342 20216633 -103859539 + ORR1B2 LTR MaLR 1 367 0 3 739 474 222 67 17 chr9 20216633 20216752 -103859420 + B1_Mur3 SINE Alu 3 127 -22 3 739 1591 208 12 23 chr9 20216670 20217092 -103859080 + ORR1B1-int LTR MaLR 641 1073 -436 3 739 545 244 7 37 chr9 20217206 20217342 -103858830 + B1_Mur1 SINE Alu 1 132 -17 3 739 333 155 0 0 chr9 20217432 20217490 -103858682 + GA-rich Low_complexity Low_complexity 2 59 0 3 739 682 131 14 14 chr9 20218202 20218342 -103857830 + GA-rich Low_complexity Low_complexity 3 142 0 3 739 436 286 84 31 chr9 20218346 20218537 -103857635 + HERVL74-int LTR ERVL 2281 2481 -3204 3 739 300 181 99 111 chr9 20218604 20218685 -103857487 + HERVL74-int LTR ERVL 2573 2652 -3033 3 739 532 257 96 0 chr9 20218959 20219095 -103857077 + B1_Mur1 SINE Alu 1 149 0 3 739 375 307 126 0 chr9 20219124 20219251 -103856921 + B3A SINE B2 1 143 -55 3 739 200 59 29 0 chr9 20219261 20219295 -103856877 + (CCCA)n Simple_repeat Simple_repeat 3 37 0 3 739 15694 130 20 37 chr9 20219399 20220968 -103855204 + L1_Mus1 LINE L1 590 2140 -3743 3 739 1784 175 35 58 chr9 20220968 20221368 -103854804 + RLTR9C LTR ERVK 1 391 -2 3 739 15694 111 4 13 chr9 20221368 20221568 -103854604 + L1_Mus1 LINE L1 2141 2332 -3551 3 739 4462 14 0 12 chr9 20221568 20222067 -103854105 - MT2_Mm LTR ERVL 0 493 1 3 739 25892 89 7 10 chr9 20222067 20226316 -103849856 + L1_Mus1 LINE L1 2333 6566 -1 3 739 432 0 0 0 chr9 20226684 20226732 -103849440 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 739 707 224 162 11 chr9 20226735 20226920 -103849252 - B3 SINE B2 -3 213 1 3 739 947 223 40 10 chr9 20227103 20227302 -103848870 + B3 SINE B2 7 211 -5 3 739 305 293 101 0 chr9 20227378 20227477 -103848695 - PB1D10 SINE Alu -7 110 2 3 739 218 206 44 73 chr9 20227533 20227601 -103848571 + B3A SINE B2 14 79 -119 3 739 1696 200 42 93 chr9 20228100 20228592 -103847580 - RLTR1B LTR ERV1 0 512 1 3 739 408 292 106 0 chr9 20229006 20229119 -103847053 + RSINE1 SINE B4 12 136 -29 3 739 1317 87 0 0 chr9 20229144 20229316 -103846856 + B2_Mm2 SINE B2 2 173 -22 3 739 414 0 0 0 chr9 20229317 20229363 -103846809 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 739 1161 50 42 7 chr9 20229604 20229746 -103846426 + B1_Mus1 SINE Alu 2 148 0 3 739 210 91 0 0 chr9 20229747 20229780 -103846392 + (A)n Simple_repeat Simple_repeat 1 33 0 3 739 614 268 8 0 chr9 20229913 20230040 -103846132 - RSINE1 SINE B4 -36 129 2 3 739 233 104 21 0 chr9 20230043 20230070 -103846102 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 3 739 1210 75 14 0 chr9 20230070 20230216 -103845956 - B1_Mus1 SINE Alu 0 148 1 3 739 233 104 21 0 chr9 20230216 20230236 -103845936 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 3 739 433 314 91 34 chr9 20230262 20230437 -103845735 - B3A SINE B2 -11 187 3 3 739 450 225 60 51 chr9 20230687 20230804 -103845368 + PB1D9 SINE Alu 2 119 -1 3 739 922 135 49 7 chr9 20231174 20231316 -103844856 - B1_Mur4 SINE Alu 0 150 3 3 739 274 200 143 0 chr9 20231441 20231511 -103844661 + MT2B LTR ERVL 176 255 -346 3 739 282 82 393 0 chr9 20231469 20231530 -103844642 + B1_Mus2 SINE Alu 55 139 -10 3 739 1551 207 73 25 chr9 20231554 20231911 -103844261 - ORR1D1 LTR MaLR 0 374 1 3 739 3313 204 82 54 chr9 20231911 20233138 -103843034 - ORR1D1-int LTR MaLR -53 1527 62 3 739 249 195 26 0 chr9 20233226 20233303 -103842869 - ORR1D1 LTR MaLR -254 140 62 3 739 256 159 43 14 chr9 20233304 20233374 -103842798 - ORR1B1 LTR MaLR -258 136 65 3 739 399 100 165 73 chr9 20233375 20233517 -103842655 - ORR1D1 LTR MaLR -254 140 5 3 739 378 42 0 0 chr9 20233533 20233581 -103842591 + (TATG)n Simple_repeat Simple_repeat 1 48 0 3 739 517 250 170 55 chr9 20233687 20233721 -103842451 - B3 SINE B2 -13 203 168 3 739 396 0 0 0 chr9 20233721 20233765 -103842407 + (TATG)n Simple_repeat Simple_repeat 1 44 0 3 739 517 250 170 55 chr9 20233765 20233912 -103842260 - B3 SINE B2 -49 167 1 3 739 259 284 137 0 chr9 20234039 20234141 -103842031 - Lx8 LINE L1 -174 7299 7184 3 739 761 87 0 10 chr9 20234404 20234508 -103841664 + B1_Mus1 SINE Alu 2 104 -44 3 739 653 303 28 6 chr9 20234530 20234706 -103841466 + B3A SINE B2 1 180 -18 3 739 358 291 81 87 chr9 20234746 20234759 -103841413 + B4A SINE B4 70 127 -165 3 739 763 148 43 22 chr9 20234759 20234897 -103841275 + B1_Mus2 SINE Alu 7 147 0 3 739 358 291 81 87 chr9 20234897 20234919 -103841253 + B4A SINE B4 128 241 -51 3 739 272 299 79 40 chr9 20234916 20235017 -103841155 + B3A SINE B2 10 114 -84 3 739 270 0 0 0 chr9 20235043 20235073 -103841099 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 739 257 254 96 37 chr9 20235080 20235215 -103840957 + Lx9 LINE L1 5701 5875 -1769 3 739 395 306 152 23 chr9 20235315 20235492 -103840680 + ID_B1 SINE B4 11 210 -14 3 739 927 0 0 0 chr9 20235533 20235636 -103840536 + (GGGAGA)n Simple_repeat Simple_repeat 6 108 0 3 739 225 0 0 0 chr9 20235692 20235717 -103840455 + (A)n Simple_repeat Simple_repeat 1 25 0 3 739 521 285 40 96 chr9 20235719 20235917 -103840255 + B3A SINE B2 1 187 -11 3 739 311 255 35 78 chr9 20235949 20236064 -103840108 - ORR1E LTR MaLR -30 349 240 3 739 390 223 0 48 chr9 20236111 20236218 -103839954 - ORR1E LTR MaLR -267 103 4 3 739 717 255 0 12 chr9 20236258 20236421 -103839751 + B3 SINE B2 32 192 -24 3 739 231 298 78 39 chr9 20236433 20236562 -103839610 + L1MA9 LINE L1 5907 6040 -272 3 739 299 315 95 38 chr9 20236895 20237159 -103839013 - L1M2 LINE L1 -3434 2709 2431 3 739 536 267 29 29 chr9 20237273 20237412 -103838760 + B1F SINE Alu 1 139 -10 3 739 269 248 136 19 chr9 20237728 20237831 -103838341 + L1MA8 LINE L1 4084 4198 -1942 3 739 322 252 132 62 chr9 20238002 20238254 -103837918 + L1MA8 LINE L1 4482 4750 -1390 3 739 446 315 29 65 chr9 20238297 20238436 -103837736 + ID_B1 SINE B4 88 221 -3 3 739 547 219 132 8 chr9 20238534 20238663 -103837509 + B1_Mur1 SINE Alu 4 148 -1 3 739 333 349 0 0 chr9 20238712 20238795 -103837377 + ID4 SINE ID 1 83 0 3 739 380 323 119 8 chr9 20238895 20239029 -103837143 + B1F SINE Alu 1 149 0 3 739 508 310 92 3 chr9 20239030 20239366 -103836806 + L1MA8 LINE L1 5001 5366 -774 3 739 314 254 110 71 chr9 20239684 20239730 -103836442 + L1MA8 LINE L1 5842 5887 -404 3 739 487 250 44 9 chr9 20239730 20239843 -103836329 + PB1D10 SINE Alu 1 117 0 3 739 314 254 110 71 chr9 20239843 20239978 -103836194 + L1MA8 LINE L1 5888 6030 -261 3 739 524 272 59 0 chr9 20240065 20240201 -103835971 + B1F SINE Alu 1 144 -5 3 739 314 270 35 35 chr9 20240898 20241040 -103835132 - MMSAT4 Satellite Satellite -5 163 22 3 739 229 279 51 58 chr9 20240972 20241109 -103835063 - MurSatRep1 Unknown Unknown -257 1880 1745 3 739 256 321 36 56 chr9 20241172 20241367 -103834805 - MurSatRep1 Unknown Unknown -208 1929 1739 3 739 262 228 0 0 chr9 20241387 20241444 -103834728 - MMSAT4 Satellite Satellite -74 94 38 3 739 238 324 54 60 chr9 20241519 20241703 -103834469 - MurSatRep1 Unknown Unknown -216 1921 1739 3 739 338 293 36 36 chr9 20241649 20241787 -103834385 - MMSAT4 Satellite Satellite 0 168 31 3 739 287 364 36 36 chr9 20241728 20242033 -103834139 - MurSatRep1 Unknown Unknown -88 2049 1745 3 739 270 336 58 50 chr9 20242235 20242633 -103833539 - MurSatRep1 Unknown Unknown 0 2137 1737 3 739 222 340 113 0 chr9 20243214 20243320 -103832852 + PB1D7 SINE Alu 2 119 -1 3 739 40 0 0 0 chr9 20243399 20243439 -103832733 + AT_rich Low_complexity Low_complexity 1 40 0 3 739 262 272 155 44 chr9 20243514 20243695 -103832477 + Lx8 LINE L1 7236 7436 -37 3 739 1052 213 19 19 chr9 20243740 20243946 -103832226 + B3 SINE B2 1 206 -10 3 739 456 202 137 11 chr9 20244150 20244245 -103831927 + B1_Mur1 SINE Alu 2 108 -41 3 739 477 0 0 0 chr9 20244255 20244308 -103831864 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 739 323 262 18 61 chr9 20244930 20245044 -103831128 + PB1D7 SINE Alu 12 120 0 3 739 285 308 31 0 chr9 20245047 20245112 -103831060 + ID4 SINE ID 3 69 -14 3 739 464 302 0 25 chr9 20245443 20245565 -103830607 + PB1D7 SINE Alu 1 119 -1 3 739 696 223 0 0 chr9 20245765 20245904 -103830268 - MurSatRep1 Unknown Unknown -1391 746 608 4 739 223 214 71 0 chr9 20247299 20247341 -103828831 - ID_B1 SINE B4 -107 117 73 4 739 26 0 0 0 chr9 20247426 20247452 -103828720 + AT_rich Low_complexity Low_complexity 1 26 0 4 739 639 222 277 17 chr9 20247754 20248050 -103828122 + MTD LTR MaLR 47 419 0 4 739 251 286 0 51 chr9 20248214 20248273 -103827899 + RSINE1 SINE B4 110 165 0 4 739 762 158 59 15 chr9 20248308 20248443 -103827729 - B1_Mur4 SINE Alu 0 150 10 4 739 1265 54 0 0 chr9 20249635 20249782 -103826390 + B1_Mus2 SINE Alu 1 147 0 4 739 289 162 45 7 chr9 20249875 20250030 -103826142 + (TA)n Simple_repeat Simple_repeat 2 162 0 4 739 950 264 112 21 chr9 20250492 20250821 -103825351 + ORR1E LTR MaLR 1 359 0 4 739 213 39 0 0 chr9 20250870 20250896 -103825276 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 739 1284 54 0 0 chr9 20250945 20251092 -103825080 + B1_Mus2 SINE Alu 1 147 0 4 739 621 252 108 18 chr9 20251143 20251309 -103824863 + B3 SINE B2 2 182 -34 4 739 1210 205 47 0 chr9 20251321 20251575 -103824597 - MTD LTR MaLR -8 411 146 4 739 23 33 0 0 chr9 20251605 20251635 -103824537 + AT_rich Low_complexity Low_complexity 1 30 0 4 739 803 113 28 76 chr9 20251636 20251780 -103824392 + B1_Mur4 SINE Alu 1 137 -13 4 739 194 0 0 37 chr9 20251783 20251810 -103824362 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 739 636 241 93 68 chr9 20251814 20252019 -103824153 - B3 SINE B2 -5 211 2 4 739 21 0 0 0 chr9 20252055 20252076 -103824096 + AT_rich Low_complexity Low_complexity 1 21 0 4 739 513 0 0 0 chr9 20252076 20252133 -103824039 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 4 739 438 97 69 0 chr9 20252496 20252568 -103823604 + RMER19B LTR ERVK 1 77 -825 4 739 3656 79 42 8 chr9 20252570 20253070 -103823102 - MurERV4_19-int LTR ERVK -3234 2546 2030 4 739 634 261 84 28 chr9 20253246 20253530 -103822642 + RLTR15 LTR ERVK 49 348 -11 4 739 3558 48 0 0 chr9 20253857 20254253 -103821919 - MTA_Mm LTR MaLR 0 396 1 4 739 1145 209 64 29 chr9 20254298 20254609 -103821563 + L1_Mur3 LINE L1 1715 2036 -3844 4 739 585 156 7 103 chr9 20254605 20254672 -103821500 + L1_Mur3 LINE L1 2154 2209 -3671 4 739 1730 32 0 0 chr9 20254672 20254860 -103821312 - B2_Mm1a SINE B2 -4 189 2 4 739 585 156 7 103 chr9 20254860 20254928 -103821244 + L1_Mur3 LINE L1 2210 2276 -3604 4 739 2678 53 6 26 chr9 20254927 20255274 -103820898 - L1_Mus1 LINE L1 -242 6325 5986 4 739 1941 57 4 0 chr9 20255274 20255502 -103820670 + L1_Mus1 LINE L1 6337 6565 -2 4 739 34 24 0 0 chr9 20255629 20255670 -103820502 + AT_rich Low_complexity Low_complexity 1 41 0 4 739 1069 59 0 7 chr9 20255707 20255844 -103820328 + B2_Mm2 SINE B2 2 137 -58 4 739 2812 158 108 119 chr9 20255844 20256557 -103819615 + L1_Mur3 LINE L1 2311 3013 -2867 4 739 219 69 0 0 chr9 20256557 20256586 -103819586 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 739 2812 158 108 119 chr9 20256586 20256852 -103819320 + L1_Mur3 LINE L1 3014 3279 -2601 4 739 1162 180 126 72 chr9 20256852 20257266 -103818906 + RMER10A LTR ERVL 3 438 -4 4 739 1739 198 45 209 chr9 20257272 20257761 -103818411 + L1_Mur3 LINE L1 3273 3747 -2133 4 739 504 215 23 76 chr9 20257761 20257817 -103818355 + B1_Mus1 SINE Alu 25 72 -76 4 739 1430 85 11 0 chr9 20257817 20258006 -103818166 + B2_Mm1a SINE B2 3 193 0 4 739 504 215 23 76 chr9 20258006 20258080 -103818092 + B1_Mus1 SINE Alu 73 148 0 4 739 1739 198 45 209 chr9 20258080 20258264 -103817908 + L1_Mur3 LINE L1 3748 3944 -1936 4 739 2465 125 68 11 chr9 20258271 20258859 -103817313 + RLTR31_Mm LTR ERVK 1 539 -22 4 739 2186 144 92 16 chr9 20258880 20259261 -103816911 + RLTR17 LTR ERVK 283 692 0 4 739 4664 197 56 36 chr9 20259263 20260416 -103815756 + L1_Mur3 LINE L1 3958 5134 -746 4 739 334 228 2 0 chr9 20261112 20261178 -103814994 + ORR1D1 LTR MaLR 1 67 -292 4 739 557 197 109 43 chr9 20262004 20262142 -103814030 + B1F SINE Alu 2 148 -1 4 739 961 261 10 5 chr9 20262157 20262361 -103813811 + B3 SINE B2 1 205 -11 4 739 456 301 44 29 chr9 20262408 20262545 -103813627 + B3A SINE B2 28 166 -32 4 739 832 192 89 11 chr9 20262567 20262746 -103813426 - B3 SINE B2 -23 193 1 4 739 2205 113 18 124 chr9 20262963 20263408 -103812764 + RMER10B LTR ERVL 1 398 0 4 739 523 297 56 19 chr9 20263464 20263625 -103812547 - B3A SINE B2 -31 167 1 4 739 286 204 23 0 chr9 20263803 20263891 -103812281 + GA-rich Low_complexity Low_complexity 1 90 0 4 739 560 250 21 14 chr9 20264997 20265139 -103811033 + B1F2 SINE Alu 7 149 0 4 739 25 75 0 0 chr9 20265301 20265354 -103810818 + AT_rich Low_complexity Low_complexity 1 53 0 4 739 267 31 0 0 chr9 20265428 20265460 -103810712 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 739 566 192 0 37 chr9 20265562 20265670 -103810502 + B1_Mur4 SINE Alu 32 135 -15 4 739 426 20 0 0 chr9 20265716 20265767 -103810405 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 739 255 61 0 0 chr9 20265855 20265888 -103810284 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 739 302 305 97 7 chr9 20265896 20266051 -103810121 + HERVL40-int LTR ERVL 5132 5300 -230 4 739 647 294 8 0 chr9 20266231 20266357 -103809815 - RSINE1 SINE B4 -2 163 37 4 739 549 0 0 0 chr9 20266390 20266451 -103809721 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 739 533 219 0 37 chr9 20266466 20266575 -103809597 - B1_Mur2 SINE Alu -9 140 36 4 739 439 216 25 90 chr9 20266589 20266711 -103809461 - PB1D9 SINE Alu -2 118 5 4 739 711 243 69 0 chr9 20267244 20267417 -103808755 - ID_B1 SINE B4 -39 185 1 4 739 1780 209 42 72 chr9 20267622 20268054 -103808118 - MTD LTR MaLR 0 419 1 4 739 631 183 72 12 chr9 20268054 20268220 -103807952 - MTD-int LTR MaLR 0 1258 1083 4 739 1572 217 33 27 chr9 20268221 20268556 -103807616 + Lx6 LINE L1 7068 7411 -49 4 739 3049 122 67 34 chr9 20268556 20269063 -103807109 + RLTR28 LTR ERVL 1 524 0 4 739 1572 217 33 27 chr9 20269063 20269092 -103807080 + Lx6 LINE L1 7412 7434 -26 4 739 703 163 58 58 chr9 20269136 20269273 -103806899 + B1_Mur3 SINE Alu 1 137 -12 4 739 245 135 0 0 chr9 20269296 20269333 -103806839 + B1_Mur3 SINE Alu 91 127 -22 4 739 474 33 0 0 chr9 20269337 20269397 -103806775 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 739 453 110 0 0 chr9 20269397 20269478 -103806694 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 739 1498 221 167 78 chr9 20269482 20270258 -103805914 - MTD-int LTR MaLR -287 811 1 4 739 269 210 61 12 chr9 20270258 20270340 -103805832 - MTD LTR MaLR 0 421 336 4 739 225 0 0 0 chr9 20270347 20270372 -103805800 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 739 667 103 10 0 chr9 20270376 20270473 -103805699 - B1_Mus2 SINE Alu -16 131 34 4 739 1501 217 51 22 chr9 20270495 20270811 -103805361 - MTD LTR MaLR -94 325 1 4 739 743 285 56 26 chr9 20270968 20271202 -103804970 + B4A SINE B4 2 242 -50 4 739 189 0 0 0 chr9 20271263 20271284 -103804888 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 739 422 275 8 76 chr9 20271347 20271465 -103804707 + RSINE1 SINE B4 56 165 0 4 739 217 0 0 57 chr9 20271537 20271572 -103804600 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4 739 358 314 146 46 chr9 20271578 20271948 -103804224 - LTR55 LTR ERV 0 548 142 4 739 286 303 74 6 chr9 20271960 20272136 -103804036 - L1M3 LINE L1 -458 5722 5535 4 739 553 265 29 29 chr9 20272191 20272327 -103803845 - RSINE1 SINE B4 -28 137 2 4 739 232 189 94 0 chr9 20272355 20272408 -103803764 - L1M3 LINE L1 -820 5477 5420 4 739 388 200 0 0 chr9 20272699 20272764 -103803408 - PB1D9 SINE Alu -54 66 2 4 739 270 143 0 138 chr9 20273038 20273103 -103803069 + B1_Mur3 SINE Alu 93 148 -1 4 739 354 317 0 0 chr9 20273245 20273327 -103802845 - RSINE1 SINE B4 -1 164 83 4 739 436 283 100 93 chr9 20273331 20273600 -103802572 - MLT1B LTR MaLR -6 384 114 4 739 731 271 80 10 chr9 20273608 20273809 -103802363 - B3 SINE B2 -1 215 1 4 739 437 294 16 16 chr9 20273846 20273967 -103802205 - RSINE1 SINE B4 -17 148 28 4 739 387 319 125 24 chr9 20274025 20274258 -103801914 - B4A SINE B4 -20 272 4 4 739 364 342 21 47 chr9 20274399 20274900 -103801272 - MurSatRep1 Unknown Unknown -88 2049 1719 4 739 289 324 35 35 chr9 20274996 20275137 -103801035 - MMSAT4 Satellite Satellite 0 168 28 4 739 342 306 25 48 chr9 20275078 20275295 -103800877 - MurSatRep1 Unknown Unknown -187 1950 1737 4 739 311 274 45 34 chr9 20275248 20275463 -103800709 - MMSAT4 Satellite Satellite 0 217 1 4 739 289 307 69 0 chr9 20276375 20276476 -103799696 - B1F1 SINE Alu -40 109 2 4 739 1463 70 0 31 chr9 20276525 20276717 -103799455 + B2_Mm2 SINE B2 1 186 -9 4 739 581 291 29 71 chr9 20276922 20277092 -103799080 + B4A SINE B4 1 163 -129 4 739 471 242 204 0 chr9 20277238 20277250 -103798922 - RSINE1 SINE B4 -4 161 150 4 739 207 0 0 0 chr9 20277250 20277273 -103798899 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 739 471 242 204 0 chr9 20277273 20277392 -103798780 - RSINE1 SINE B4 -16 149 4 4 739 440 248 127 8 chr9 20277662 20277788 -103798384 - B1F2 SINE Alu -7 142 2 4 739 216 301 24 12 chr9 20277933 20278017 -103798155 - BC1_Mm scRNA scRNA -66 86 2 4 739 228 150 25 0 chr9 20278237 20278277 -103797895 - B4A SINE B4 -221 71 31 4 739 21 0 0 0 chr9 20278428 20278449 -103797723 + AT_rich Low_complexity Low_complexity 1 21 0 4 739 535 331 33 70 chr9 20278504 20278806 -103797366 - B4A SINE B4 -1 291 1 4 739 845 164 37 0 chr9 20278912 20279046 -103797126 - B1_Mus2 SINE Alu -7 140 2 4 739 611 186 14 65 chr9 20279118 20279256 -103796916 + B1_Mur1 SINE Alu 19 149 0 4 739 571 288 0 0 chr9 20279343 20279496 -103796676 - MurSatRep1 Unknown Unknown -1391 746 594 4 739 651 81 0 0 chr9 20279656 20279755 -103796417 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 739 985 252 45 15 chr9 20279796 20280062 -103796110 - B4A SINE B4 -18 274 1 4 739 235 93 23 0 chr9 20280076 20280119 -103796053 - ID4 SINE ID -38 45 2 4 739 298 287 23 11 chr9 20280367 20280455 -103795717 + RSINE1 SINE B4 48 136 -29 4 739 403 263 126 15 chr9 20280587 20280722 -103795450 + MTD LTR MaLR 18 167 -252 5 739 300 91 0 0 chr9 20280762 20280806 -103795366 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 739 888 242 57 0 chr9 20281141 20281352 -103794820 + ID_B1 SINE B4 2 224 0 5 739 915 215 80 0 chr9 20281358 20281558 -103794614 + B3 SINE B2 1 216 0 5 739 503 189 32 0 chr9 20281642 20281737 -103794435 + RSINE1 SINE B4 21 118 -47 5 739 183 80 0 0 chr9 20281769 20281794 -103794378 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 5 739 279 93 0 0 chr9 20281850 20281893 -103794279 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 739 1023 223 24 0 chr9 20282062 20282268 -103793904 - B3 SINE B2 0 216 6 5 739 532 179 0 62 chr9 20282309 20282422 -103793750 + U6 snRNA snRNA 2 107 0 5 739 288 0 0 0 chr9 20282904 20282936 -103793236 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 739 402 309 9 0 chr9 20283000 20283110 -103793062 + PB1D7 SINE Alu 1 111 -9 5 739 442 308 19 76 chr9 20283113 20283271 -103792901 + RSINE1 SINE B4 2 150 -15 5 739 329 173 229 46 chr9 20283313 20283422 -103792750 - B1_Mur3 SINE Alu 0 149 21 5 739 885 250 14 14 chr9 20283443 20283650 -103792522 - ID_B1 SINE B4 -16 208 2 5 739 21 0 0 0 chr9 20283676 20283697 -103792475 + AT_rich Low_complexity Low_complexity 1 21 0 5 739 486 313 111 12 chr9 20283962 20284214 -103791958 - B4A SINE B4 -14 278 2 5 739 241 241 17 0 chr9 20284325 20284383 -103791789 - B1F SINE Alu -90 59 1 5 739 264 107 0 152 chr9 20284609 20284643 -103791529 - Lx6 LINE L1 -2 7458 7434 5 739 1207 119 27 0 chr9 20284643 20284828 -103791344 + B2_Mm2 SINE B2 2 191 -4 5 739 264 107 0 152 chr9 20284828 20284859 -103791313 - Lx6 LINE L1 -27 7433 7403 5 739 505 175 15 0 chr9 20285074 20285211 -103790961 + (TG)n Simple_repeat Simple_repeat 2 140 0 5 739 279 258 20 39 chr9 20285213 20285336 -103790836 - B4 SINE B4 0 292 49 5 739 650 206 58 22 chr9 20285665 20285804 -103790368 + B1_Mur1 SINE Alu 1 144 -5 5 739 422 90 0 29 chr9 20285999 20286068 -103790104 + (GGGA)n Simple_repeat Simple_repeat 1 67 0 5 739 689 313 25 20 chr9 20286449 20286651 -103789521 - B3 SINE B2 -13 203 1 5 739 195 100 0 0 chr9 20286886 20286916 -103789256 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 739 312 324 56 42 chr9 20286924 20287066 -103789106 - RSINE1 SINE B4 -18 147 4 5 739 526 281 18 30 chr9 20287093 20287258 -103788914 - RSINE1 SINE B4 0 165 3 5 739 414 0 0 0 chr9 20287323 20287369 -103788803 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 739 384 250 114 0 chr9 20287409 20287497 -103788675 - B3A SINE B2 -65 133 36 5 739 466 281 17 9 chr9 20287504 20287619 -103788553 - RSINE1 SINE B4 -37 128 13 5 739 748 149 8 0 chr9 20287665 20287786 -103788386 - B1_Mur3 SINE Alu -19 130 9 5 739 319 212 0 116 chr9 20287691 20287803 -103788369 - MT2B LTR ERVL -344 257 159 5 739 604 301 85 63 chr9 20287809 20288174 -103787998 - MTD LTR MaLR -41 378 6 5 739 2504 288 124 38 chr9 20288220 20289312 -103786860 + Lx8 LINE L1 6050 7235 -238 5 739 1248 71 0 21 chr9 20289773 20289959 -103786213 + B2_Mm2 SINE B2 6 187 -8 5 739 562 258 120 5 chr9 20289974 20290165 -103786007 + Tigger7 DNA MER2_type 2258 2470 -21 5 739 734 302 89 11 chr9 20290168 20290439 -103785733 + B4A SINE B4 1 292 0 5 739 455 255 0 0 chr9 20290761 20290863 -103785309 + ID_B1 SINE B4 92 193 -31 5 739 503 289 167 20 chr9 20291761 20292012 -103784160 - HERVL74-int LTR ERVL -3160 2525 2238 5 739 437 280 42 0 chr9 20292063 20292181 -103783991 + RSINE1 SINE B4 3 125 -40 5 739 1232 48 0 0 chr9 20292226 20292372 -103783800 + B1_Mus2 SINE Alu 2 147 0 5 739 561 228 0 0 chr9 20292372 20292508 -103783664 + GA-rich Low_complexity Low_complexity 1 136 0 5 739 2748 136 9 16 chr9 20292550 20292977 -103783195 + Lx4A LINE L1 6633 7056 -2 5 739 763 228 57 28 chr9 20293149 20293361 -103782811 - HERVL74-int LTR ERVL -3605 2080 1863 5 739 620 157 24 32 chr9 20293361 20293486 -103782686 + RSINE1 SINE B4 2 125 -40 5 739 180 0 0 0 chr9 20293491 20293511 -103782661 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 739 274 294 111 46 chr9 20293532 20293685 -103782487 - HERVL74-int LTR ERVL -1758 1798 1636 5 739 289 268 58 13 chr9 20293846 20293950 -103782222 + B1F1 SINE Alu 27 148 -1 5 739 242 296 22 22 chr9 20294055 20294145 -103782027 + BC1_Mm scRNA scRNA 16 105 -47 5 739 350 193 28 44 chr9 20294314 20294564 -103781608 + GA-rich Low_complexity Low_complexity 1 245 0 5 739 238 326 56 0 chr9 20294665 20294754 -103781418 - PB1D7 SINE Alu -15 105 12 5 739 221 200 91 0 chr9 20294752 20294807 -103781365 - PB1D7 SINE Alu -50 70 11 5 739 207 0 0 0 chr9 20295212 20295235 -103780937 + (TATG)n Simple_repeat Simple_repeat 2 24 0 5 739 424 221 13 0 chr9 20295235 20295312 -103780860 - ID4_ SINE ID -3 80 3 5 739 817 282 14 23 chr9 20295326 20295547 -103780625 - ID_B1 SINE B4 0 224 6 5 739 257 286 46 119 chr9 20295667 20295752 -103780420 - B1F2 SINE Alu -2 147 64 5 739 1430 79 26 0 chr9 20295752 20295942 -103780230 + B2_Mm2 SINE B2 1 195 0 5 739 257 286 46 119 chr9 20295942 20296007 -103780165 - B1F2 SINE Alu -86 63 8 5 739 532 214 47 23 chr9 20296452 20296581 -103779591 - B1_Mur1 SINE Alu -1 148 17 5 739 26 0 0 0 chr9 20298498 20298524 -103777648 + AT_rich Low_complexity Low_complexity 1 26 0 5 739 1164 87 26 26 chr9 20298541 20298582 -103777590 + B2_Mm1t SINE B2 2 38 -155 5 739 2956 43 73 8 chr9 20298582 20298954 -103777218 - MTA_Mm LTR MaLR 0 396 1 5 739 1164 87 26 26 chr9 20298954 20299101 -103777071 + B2_Mm1t SINE B2 39 190 -3 5 739 399 264 9 52 chr9 20300020 20300136 -103776036 - PB1D10 SINE Alu 0 117 7 5 739 269 232 0 18 chr9 20300556 20300613 -103775559 - ID4_ SINE ID -2 81 26 5 739 274 192 107 27 chr9 20300737 20300812 -103775360 + ID2 SINE ID 2 82 -1 5 739 654 319 41 26 chr9 20301583 20301853 -103774319 - B4A SINE B4 -18 274 1 5 739 556 265 73 0 chr9 20302141 20302292 -103773880 - RSINE1 SINE B4 -1 164 3 5 739 267 54 0 0 chr9 20302322 20302359 -103773813 + (A)n Simple_repeat Simple_repeat 1 37 0 5 739 691 307 69 46 chr9 20302403 20302751 -103773421 + MLT-int LTR MaLR 255 610 -1125 5 739 391 209 0 0 chr9 20302759 20302826 -103773346 + ID4_ SINE ID 4 70 -13 5 739 426 298 152 0 chr9 20303050 20303248 -103772924 - HERVL40-int LTR ERVL -2 5528 5301 5 739 331 244 12 37 chr9 20303275 20303356 -103772816 + ID4_ SINE ID 5 83 0 5 739 620 262 13 0 chr9 20303381 20303530 -103772642 - HERVL40-int LTR ERVL -266 5264 5114 5 739 265 304 15 30 chr9 20303760 20303900 -103772272 - MMSAT4 Satellite Satellite -75 137 1 5 739 259 319 47 40 chr9 20303935 20304085 -103772087 - MurSatRep1 Unknown Unknown -260 1877 1727 5 739 332 271 23 23 chr9 20304021 20304153 -103772019 - MMSAT4 Satellite Satellite 0 168 37 5 739 267 326 79 61 chr9 20304103 20304495 -103771677 - MurSatRep1 Unknown Unknown 0 2137 1739 5 739 751 260 80 22 chr9 20305705 20305929 -103770243 + B4 SINE B4 1 237 -55 5 739 329 230 98 20 chr9 20305915 20306017 -103770155 + RSINE1 SINE B4 25 134 -31 5 739 230 203 30 45 chr9 20306097 20306164 -103770008 + ID4_ SINE ID 16 81 -2 5 739 284 343 0 36 chr9 20306961 20307073 -103769099 + PB1D10 SINE Alu 2 109 -8 5 739 283 330 0 0 chr9 20307102 20307155 -103769017 + A-rich Low_complexity Low_complexity 1 53 0 5 739 399 284 0 49 chr9 20307155 20307277 -103768895 + PB1D9 SINE Alu 5 120 0 5 739 283 330 0 0 chr9 20307277 20307332 -103768840 + A-rich Low_complexity Low_complexity 54 108 0 5 739 1890 210 15 56 chr9 20307441 20307921 -103768251 + L1_Rod LINE L1 5318 5777 -70 5 739 3201 212 141 41 chr9 20307923 20308817 -103767355 + Lx9 LINE L1 6662 7644 0 5 739 242 309 113 63 chr9 20308918 20309139 -103767033 + B4A SINE B4 1 232 -60 5 739 412 141 24 71 chr9 20309259 20309343 -103766829 - B1_Mur2 SINE Alu -56 93 14 5 739 673 240 0 0 chr9 20309488 20309642 -103766530 - MurSatRep1 Unknown Unknown -1391 746 593 5 739 320 210 56 74 chr9 20310006 20310114 -103766058 + PB1D10 SINE Alu 9 114 -3 5 739 316 224 14 43 chr9 20310126 20310196 -103765976 + ID4_ SINE ID 4 71 -12 5 739 347 248 120 0 chr9 20310779 20310896 -103765276 + RSINE1 SINE B4 2 132 -33 5 739 28 0 0 0 chr9 20310914 20310942 -103765230 + AT_rich Low_complexity Low_complexity 1 28 0 5 739 268 283 94 0 chr9 20311870 20311976 -103764196 + PB1D7 SINE Alu 5 120 0 5 739 693 261 50 41 chr9 20312018 20312238 -103763934 - ID_B1 SINE B4 -1 223 2 5 739 863 182 86 30 chr9 20312869 20313067 -103763105 + B3 SINE B2 8 216 0 5 739 21 36 0 0 chr9 20313067 20313095 -103763077 + AT_rich Low_complexity Low_complexity 1 28 0 5 739 629 114 0 9 chr9 20313099 20313205 -103762967 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 5 739 253 234 0 0 chr9 20313213 20313260 -103762912 + B4A SINE B4 10 56 -236 5 739 253 286 71 12 chr9 20313287 20313363 -103762809 + B4A SINE B4 152 232 -60 5 739 766 228 20 20 chr9 20313363 20313560 -103762612 + B3A SINE B2 2 198 0 5 739 237 349 76 50 chr9 20313560 20313625 -103762547 + B4A SINE B4 2 270 -22 5 739 450 0 0 0 chr9 20313626 20313676 -103762496 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 739 214 171 73 0 chr9 20313910 20313951 -103762221 - PB1D10 SINE Alu -38 79 36 5 739 208 147 0 0 chr9 20314167 20314201 -103761971 + (A)n Simple_repeat Simple_repeat 1 34 0 5 739 571 206 47 8 chr9 20314309 20314436 -103761736 + B1F SINE Alu 18 149 0 5 739 341 208 14 27 chr9 20314437 20314511 -103761661 + ID2 SINE ID 2 74 -9 6 739 544 286 7 26 chr9 20314553 20314704 -103761468 + RSINE1 SINE B4 3 150 -15 6 739 307 282 0 0 chr9 20315158 20315229 -103760943 - PB1D10 SINE Alu -10 107 37 6 739 316 228 56 118 chr9 20315362 20315506 -103760666 - B4A SINE B4 0 292 158 6 739 1904 80 104 0 chr9 20315510 20315799 -103760373 + ORR1A2 LTR MaLR 1 319 -8 6 739 643 96 21 13 chr9 20315803 20315967 -103760205 + ORR1A2-int LTR MaLR 1 163 -1207 6 740 294 297 11 0 chr9 20316246 20316337 -103759835 - MER88 LTR ERVL -305 159 68 6 740 415 266 56 21 chr9 20316388 20316530 -103759642 + B3 SINE B2 64 210 -6 6 740 619 273 81 19 chr9 20316563 20316772 -103759400 + ID_B1 SINE B4 3 224 0 6 740 738 254 43 0 chr9 20316980 20317165 -103759007 + B3 SINE B2 9 201 -15 6 740 27 0 0 0 chr9 20317165 20317192 -103758980 + AT_rich Low_complexity Low_complexity 1 27 0 6 740 618 209 130 5 chr9 20317708 20317900 -103758272 + ID_B1 SINE B4 5 220 -4 6 740 239 237 250 0 chr9 20317985 20318061 -103758111 + RSINE1 SINE B4 4 98 -67 6 740 204 220 0 48 chr9 20318404 20318466 -103757706 + (TCTCTG)n Simple_repeat Simple_repeat 5 63 0 6 740 411 247 2 75 chr9 20318902 20319022 -103757150 - MT2A LTR ERVL -422 111 1 6 740 455 285 157 29 chr9 20319053 20319295 -103756877 - B4A SINE B4 -18 274 2 6 740 607 270 32 126 chr9 20319461 20319615 -103756557 + ID_B1 SINE B4 2 163 -61 6 740 640 137 162 0 chr9 20319615 20319732 -103756440 + B1_Mus1 SINE Alu 1 136 -12 6 740 607 270 32 126 chr9 20319732 20319823 -103756349 + ID_B1 SINE B4 164 224 0 6 740 271 225 141 33 chr9 20319826 20319918 -103756254 - MER2 DNA MER2_type -161 184 83 6 740 574 266 21 7 chr9 20319921 20320065 -103756107 + B1F1 SINE Alu 1 146 -3 6 740 244 266 0 15 chr9 20320128 20320193 -103755979 + PB1D10 SINE Alu 49 112 -5 6 740 472 283 62 6 chr9 20320624 20320784 -103755388 + B3A SINE B2 1 169 -29 6 740 260 332 16 39 chr9 20320922 20321045 -103755127 + PB1D10 SINE Alu 1 128 -21 6 740 267 306 53 26 chr9 20321298 20321412 -103754760 - PB1D10 SINE Alu 0 117 1 6 740 268 282 14 0 chr9 20321713 20321784 -103754388 - PB1D10 SINE Alu -22 95 24 6 740 24 0 0 0 chr9 20321869 20321893 -103754279 + AT_rich Low_complexity Low_complexity 1 24 0 6 740 783 179 15 0 chr9 20321913 20322047 -103754125 - B1_Mur4 SINE Alu -12 138 3 6 740 455 289 58 15 chr9 20322233 20322370 -103753802 - ID_B1 SINE B4 -81 143 1 6 740 22 99 0 0 chr9 20322418 20322489 -103753683 + AT_rich Low_complexity Low_complexity 1 71 0 6 740 525 216 69 0 chr9 20322622 20322738 -103753434 - B1F SINE Alu -8 141 18 6 740 231 114 0 0 chr9 20322754 20322789 -103753383 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 6 740 218 162 0 0 chr9 20323147 20323184 -103752988 - B3 SINE B2 -165 51 15 6 740 279 290 18 53 chr9 20323186 20323299 -103752873 - PB1D9 SINE Alu -2 118 10 6 740 468 172 0 0 chr9 20323592 20323679 -103752493 + GA-rich Low_complexity Low_complexity 1 87 0 6 740 403 212 0 105 chr9 20323709 20323804 -103752368 + RSINE1 SINE B4 11 95 -70 6 740 317 265 0 0 chr9 20323879 20323947 -103752225 + ID4 SINE ID 3 70 -13 6 740 432 86 0 0 chr9 20323948 20324018 -103752154 + (TCTCTG)n Simple_repeat Simple_repeat 2 71 0 6 740 258 185 0 36 chr9 20324194 20324250 -103751922 - ID4 SINE ID -10 73 20 6 740 431 198 81 70 chr9 20324466 20324651 -103751521 + B3A SINE B2 1 187 -11 6 740 264 300 29 11 chr9 20324710 20324822 -103751350 + ID4 SINE ID 12 123 -29 6 740 21 0 0 0 chr9 20324867 20324888 -103751284 + AT_rich Low_complexity Low_complexity 1 21 0 6 740 263 167 104 15 chr9 20325149 20325216 -103750956 + ID4 SINE ID 2 74 -9 6 740 545 204 211 24 chr9 20326372 20326538 -103749634 + ID_B1 SINE B4 21 217 -7 6 740 269 207 181 129 chr9 20326583 20326738 -103749434 - RSINE1 SINE B4 0 165 3 6 740 394 276 35 0 chr9 20326813 20326900 -103749272 + PB1D9 SINE Alu 2 91 -29 6 740 405 0 0 0 chr9 20326944 20326989 -103749183 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 740 982 248 5 0 chr9 20327082 20327296 -103748876 + B3 SINE B2 2 216 0 6 740 260 258 0 8 chr9 20327428 20327447 -103748725 + ORR1B1-int LTR MaLR 631 648 -861 6 740 836 55 0 0 chr9 20327447 20327556 -103748616 + B1_Mm SINE Alu 2 110 -37 6 740 555 167 0 38 chr9 20327558 20327570 -103748602 + B1_Mur3 SINE Alu 47 58 -91 6 740 625 218 45 105 chr9 20327570 20327770 -103748402 + B3A SINE B2 1 188 -10 6 740 555 167 0 38 chr9 20327770 20327863 -103748309 + B1_Mur3 SINE Alu 59 148 -1 6 740 405 222 20 3 chr9 20327900 20328024 -103748148 - L1M4 LINE L1 -464 5715 5591 6 740 1170 70 122 0 chr9 20328027 20328199 -103747973 + B2_Mm2 SINE B2 3 195 0 6 740 402 211 266 0 chr9 20328234 20328343 -103747829 + B3A SINE B2 3 140 -58 6 740 627 223 14 0 chr9 20328465 20328604 -103747568 - Lx7 LINE L1 -451 7022 6882 6 740 1581 256 80 23 chr9 20328701 20329530 -103746642 - Lx7 LINE L1 -1409 6287 5380 6 740 1611 263 47 30 chr9 20329528 20330057 -103746115 + Lx8 LINE L1 6344 6881 -592 6 740 604 276 20 14 chr9 20330131 20330299 -103745873 - ID_B1 SINE B4 -48 244 77 6 740 257 336 62 8 chr9 20330367 20330496 -103745676 + RSINE1 SINE B4 11 146 -19 6 740 1572 43 0 0 chr9 20330529 20330715 -103745457 - B2_Mm1a SINE B2 -6 187 2 6 740 736 230 7 13 chr9 20331066 20331220 -103744952 - RSINE1 SINE B4 -2 163 11 6 740 536 212 22 29 chr9 20331372 20331508 -103744664 + RSINE1 SINE B4 3 137 -28 6 740 369 279 0 0 chr9 20331557 20331643 -103744529 + PB1D10 SINE Alu 1 86 -31 6 740 570 333 0 13 chr9 20331800 20331955 -103744217 + RSINE1 SINE B4 13 165 0 6 740 23 33 0 0 chr9 20331959 20331989 -103744183 + AT_rich Low_complexity Low_complexity 1 30 0 6 740 405 0 0 0 chr9 20331993 20332038 -103744134 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 740 608 173 9 26 chr9 20332043 20332156 -103744016 + B3 SINE B2 8 118 -98 6 740 812 118 0 22 chr9 20332146 20332284 -103743888 - B2_Mm2 SINE B2 -59 136 2 6 740 348 179 75 0 chr9 20332420 20332487 -103743685 + B1_Mur4 SINE Alu 2 73 -77 6 740 695 248 0 7 chr9 20332635 20332777 -103743395 + B1_Mur1 SINE Alu 1 141 -8 6 740 577 271 53 32 chr9 20332838 20333025 -103743147 + B3A SINE B2 2 192 -6 6 740 181 140 23 23 chr9 20333167 20333185 -103742987 + (TAGA)n Simple_repeat Simple_repeat 2 19 0 6 740 480 35 0 0 chr9 20333185 20333243 -103742929 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 740 181 140 23 23 chr9 20333243 20333268 -103742904 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 6 740 475 214 83 15 chr9 20333272 20333405 -103742767 - ORR1D2 LTR MaLR -12 358 217 6 740 850 222 61 69 chr9 20333821 20334082 -103742090 - ORR1D2 LTR MaLR -102 268 10 6 740 1263 236 74 6 chr9 20334092 20334404 -103741768 - MT2A LTR ERVL -48 553 144 6 740 440 310 8 15 chr9 20334623 20334754 -103741418 - RSINE1 SINE B4 -11 154 25 6 740 267 207 10 130 chr9 20334744 20334844 -103741328 - RSINE1 SINE B4 -74 91 4 6 740 571 209 122 15 chr9 20334946 20335077 -103741095 - B1_Mus2 SINE Alu -2 145 1 6 740 649 300 19 28 chr9 20335084 20335300 -103740872 - B3 SINE B2 -1 215 2 6 740 261 0 0 0 chr9 20335321 20335350 -103740822 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 6 740 472 273 20 73 chr9 20335367 20335517 -103740655 - RSINE1 SINE B4 -13 152 11 6 740 971 131 0 14 chr9 20335838 20335978 -103740194 + B1_Mur3 SINE Alu 1 138 -11 6 740 600 14 0 0 chr9 20335978 20336047 -103740125 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 6 740 223 216 27 0 chr9 20336681 20336755 -103739417 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 740 571 211 32 8 chr9 20336785 20336909 -103739263 + MT2A LTR ERVL 1 127 -406 6 740 237 33 0 0 chr9 20336928 20336958 -103739214 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 740 1402 41 40 17 chr9 20336958 20337133 -103739039 - B2_Mm2 SINE B2 -16 179 1 6 740 557 112 22 0 chr9 20337134 20337223 -103738949 - B1_Mur4 SINE Alu -17 133 43 6 740 753 246 0 0 chr9 20337224 20337481 -103738691 + (CCTG)n Simple_repeat Simple_repeat 1 257 0 6 740 1144 189 188 85 chr9 20337531 20337930 -103738242 + MT2A LTR ERVL 94 533 0 6 740 388 264 69 45 chr9 20339674 20339876 -103736296 - ERVL-int LTR ERVL -3055 2702 2496 6 740 505 322 26 7 chr9 20340794 20340947 -103735225 + RSINE1 SINE B4 1 156 -9 6 740 252 0 0 0 chr9 20340949 20340977 -103735195 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 6 740 304 241 0 0 chr9 20341434 20341492 -103734680 - B1F2 SINE Alu -90 59 2 6 740 215 200 0 81 chr9 20341501 20341549 -103734623 + T-rich Low_complexity Low_complexity 38 82 0 6 740 207 0 0 0 chr9 20341549 20341572 -103734600 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6 740 215 200 0 81 chr9 20341572 20341610 -103734562 + T-rich Low_complexity Low_complexity 3 37 0 6 740 695 184 65 22 chr9 20341621 20341760 -103734412 - B1_Mur2 SINE Alu 0 149 5 6 740 1016 227 0 14 chr9 20341775 20341985 -103734187 - B3 SINE B2 -1 215 9 6 740 361 283 10 0 chr9 20341998 20342097 -103734075 - PB1D7 SINE Alu 0 120 21 6 740 212 200 20 0 chr9 20342104 20342154 -103734018 + T-rich Low_complexity Low_complexity 4 54 0 6 740 2909 155 17 32 chr9 20342173 20342705 -103733467 + RLTR28 LTR ERVL 1 524 0 7 740 324 0 0 0 chr9 20342708 20342744 -103733428 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 740 246 190 190 0 chr9 20342788 20342846 -103733326 - B4 SINE B4 -21 271 203 7 740 274 236 62 41 chr9 20343055 20343152 -103733020 - L1MD2 LINE L1 -6358 189 91 7 740 808 203 27 33 chr9 20343270 20343453 -103732719 - B3A SINE B2 -16 182 1 7 740 721 241 6 41 chr9 20344099 20344268 -103731904 - RSINE1 SINE B4 0 165 3 7 740 881 110 13 76 chr9 20344294 20344318 -103731854 + B1_Mus1 SINE Alu 1 17 -131 7 740 1367 97 38 0 chr9 20344318 20344504 -103731668 - B2_Mm2 SINE B2 -1 194 2 7 740 881 110 13 76 chr9 20344504 20344637 -103731535 + B1_Mus1 SINE Alu 18 148 0 7 740 195 100 0 0 chr9 20344637 20344667 -103731505 + (CAAAC)n Simple_repeat Simple_repeat 5 34 0 7 740 1200 201 5 0 chr9 20345123 20345327 -103730845 + B3 SINE B2 5 209 -7 7 740 21 0 0 0 chr9 20345327 20345348 -103730824 + AT_rich Low_complexity Low_complexity 1 21 0 7 740 532 211 0 27 chr9 20345351 20345463 -103730709 + PB1D9 SINE Alu 12 120 0 7 740 529 237 82 38 chr9 20345781 20345965 -103730207 - B3A SINE B2 -5 193 2 7 740 421 264 116 0 chr9 20346004 20346125 -103730047 - RSINE1 SINE B4 -28 137 3 7 740 350 69 17 0 chr9 20346436 20346494 -103729678 + (CAAAA)n Simple_repeat Simple_repeat 3 61 0 7 740 869 199 97 0 chr9 20346807 20346993 -103729179 - B3 SINE B2 -9 207 4 7 740 588 259 7 7 chr9 20347455 20347595 -103728577 - ID_B1 SINE B4 -3 221 82 7 740 237 300 107 29 chr9 20347712 20347815 -103728357 + RSINE1 SINE B4 37 147 -18 7 740 547 237 68 31 chr9 20348075 20348236 -103727936 - B4 SINE B4 -89 203 37 7 740 221 182 18 0 chr9 20348277 20348332 -103727840 + GA-rich Low_complexity Low_complexity 2 57 0 7 740 354 224 18 27 chr9 20349398 20349508 -103726664 - PB1D10 SINE Alu -8 109 1 7 740 335 194 158 30 chr9 20349719 20349820 -103726352 - PB1D10 SINE Alu 0 117 4 7 740 328 214 77 94 chr9 20350028 20350198 -103725974 - MTEa LTR MaLR 0 379 213 7 740 381 156 65 111 chr9 20350120 20350228 -103725944 + B1_Mus2 SINE Alu 30 132 -15 7 740 341 192 82 0 chr9 20350232 20350305 -103725867 + L1M5 LINE L1 5602 5680 -499 7 740 239 346 51 0 chr9 20350537 20350615 -103725557 + RSINE1 SINE B4 52 133 -32 7 740 720 279 83 42 chr9 20350626 20350749 -103725423 + HERVL74-int LTR ERVL 2249 2383 -3302 7 740 987 226 43 0 chr9 20350749 20350957 -103725215 - ID_B1 SINE B4 -6 218 2 7 740 720 279 83 42 chr9 20350957 20351098 -103725074 + HERVL74-int LTR ERVL 2384 2524 -3161 7 740 501 284 46 62 chr9 20351447 20351642 -103724530 + ID_B1 SINE B4 17 208 -16 7 740 304 309 0 0 chr9 20351761 20351842 -103724330 + ID4_ SINE ID 3 83 0 7 740 580 252 66 33 chr9 20351929 20352081 -103724091 - RSINE1 SINE B4 -1 164 8 7 740 234 0 0 0 chr9 20352091 20352117 -103724055 + (T)n Simple_repeat Simple_repeat 1 26 0 7 740 803 249 38 9 chr9 20352273 20352484 -103723688 + ID_B1 SINE B4 1 217 -7 7 740 566 75 0 11 chr9 20352919 20353013 -103723159 + (GTTTG)n Simple_repeat Simple_repeat 2 94 0 7 740 951 65 0 153 chr9 20353013 20353176 -103722996 - B1_Mus1 SINE Alu -10 138 1 7 740 556 221 65 123 chr9 20353185 20353340 -103722832 + B3A SINE B2 40 185 -10 7 740 680 229 7 0 chr9 20353478 20353618 -103722554 + ID_B1 SINE B4 81 221 -3 7 740 389 286 0 0 chr9 20353871 20353962 -103722210 + PB1D10 SINE Alu 10 100 -17 7 740 378 0 0 0 chr9 20354091 20354133 -103722039 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 740 25 0 0 0 chr9 20354151 20354176 -103721996 + AT_rich Low_complexity Low_complexity 1 25 0 7 740 452 314 27 49 chr9 20354243 20354427 -103721745 - B4A SINE B4 -26 266 87 7 740 1286 72 61 0 chr9 20354427 20354607 -103721565 - B2_Mm2 SINE B2 -3 192 2 7 740 494 110 0 24 chr9 20354617 20354701 -103721471 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 7 740 369 0 0 0 chr9 20354730 20354771 -103721401 + (TATG)n Simple_repeat Simple_repeat 1 41 0 7 740 238 236 40 27 chr9 20354781 20354855 -103721317 - RSINE1 SINE B4 -83 82 8 7 740 280 297 11 21 chr9 20354854 20354947 -103721225 - B4A SINE B4 -195 97 6 7 740 855 294 18 63 chr9 20355380 20355604 -103720568 - MTE2b LTR MaLR 0 370 152 7 740 978 196 29 25 chr9 20355604 20355808 -103720364 + B3 SINE B2 1 205 -11 7 740 855 301 30 99 chr9 20355808 20355831 -103720341 - MTE2b LTR MaLR -228 151 145 7 740 604 251 43 16 chr9 20355831 20356017 -103720155 + B3A SINE B2 5 195 -3 7 740 855 301 30 99 chr9 20356017 20356174 -103719998 - MTE2b LTR MaLR -235 144 1 7 740 1136 86 0 35 chr9 20356206 20356375 -103719797 - B2_Mm2 SINE B2 -32 163 1 7 740 189 0 0 0 chr9 20356592 20356613 -103719559 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 740 325 304 121 58 chr9 20356620 20356826 -103719346 - RMER12 LTR ERVK -4 1318 1100 7 740 4320 133 28 19 chr9 20356984 20357782 -103718390 - RLTR22_Mur LTR ERVK -1043 805 1 7 740 668 211 13 13 chr9 20357927 20358076 -103718096 + B1F1 SINE Alu 1 149 0 7 740 780 183 7 14 chr9 20358079 20358223 -103717949 + B1_Mur1 SINE Alu 7 149 0 7 740 784 209 70 25 chr9 20358227 20358428 -103717744 - B3 SINE B2 -5 211 2 7 740 331 209 15 0 chr9 20358786 20358853 -103717319 - RSINE1 SINE B4 -95 70 3 7 740 585 170 313 25 chr9 20358877 20359040 -103717132 + B3 SINE B2 1 210 -6 7 740 330 80 0 0 chr9 20359063 20359113 -103717059 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 740 534 260 100 74 chr9 20359116 20359386 -103716786 - B4 SINE B4 -14 278 2 7 740 228 67 0 0 chr9 20360290 20360320 -103715852 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 740 1235 105 11 5 chr9 20360322 20360513 -103715659 + B2_Mm2 SINE B2 2 193 -2 7 740 659 291 6 0 chr9 20360546 20360704 -103715468 + RSINE1 SINE B4 7 165 0 7 740 1354 46 114 0 chr9 20360741 20360916 -103715256 + B2_Mm2 SINE B2 1 195 0 7 740 347 295 115 0 chr9 20361185 20361324 -103714848 + MurSatRep1 Unknown Unknown 592 746 -1391 7 740 711 233 67 0 chr9 20361492 20361642 -103714530 + RSINE1 SINE B4 3 162 -3 7 740 368 213 57 113 chr9 20361685 20361791 -103714381 + PB1D10 SINE Alu 2 101 -16 7 740 1883 160 80 6 chr9 20361959 20362298 -103713874 - ORR1B2 LTR MaLR -3 364 1 7 740 1359 37 36 46 chr9 20362517 20362713 -103713459 - B2_Mm2 SINE B2 -1 194 1 7 740 566 264 7 0 chr9 20362794 20362934 -103713238 - B1_Mm SINE Alu -5 142 2 7 740 23 33 0 0 chr9 20362954 20362984 -103713188 + AT_rich Low_complexity Low_complexity 1 30 0 7 740 878 234 75 0 chr9 20362991 20363192 -103712980 - B3 SINE B2 0 216 1 7 740 434 243 213 0 chr9 20363219 20363355 -103712817 - B3A SINE B2 -33 165 1 7 740 214 278 81 27 chr9 20363448 20363522 -103712650 + ID4 SINE ID 4 81 -2 7 740 766 273 72 42 chr9 20363641 20363821 -103712351 + MTD LTR MaLR 26 211 -208 7 740 718 212 7 7 chr9 20363821 20363968 -103712204 + B1_Mus2 SINE Alu 1 147 0 7 740 766 273 72 42 chr9 20363968 20364051 -103712121 + MTD LTR MaLR 212 297 -122 7 740 507 272 15 7 chr9 20364080 20364217 -103711955 + MTD LTR MaLR 268 405 -14 7 740 240 327 0 96 chr9 20364880 20364995 -103711177 - PB1D10 SINE Alu -3 114 11 7 740 638 253 79 22 chr9 20365209 20365387 -103710785 - B3 SINE B2 -26 190 3 7 740 632 249 48 32 chr9 20365390 20365577 -103710595 - B3A SINE B2 -2 196 7 7 740 644 234 7 20 chr9 20365606 20365754 -103710418 - B1_Mus2 SINE Alu -1 146 1 7 740 257 252 95 57 chr9 20365786 20365891 -103710281 + B1F SINE Alu 2 110 -17 7 740 195 100 0 0 chr9 20365894 20365924 -103710248 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 7 740 1404 102 0 5 chr9 20365957 20366153 -103710019 + B2_Mm2 SINE B2 1 195 0 7 740 613 193 0 14 chr9 20366153 20366295 -103709877 + GA-rich Low_complexity Low_complexity 2 141 0 7 740 678 269 14 98 chr9 20366315 20366387 -103709785 + B3A SINE B2 1 73 -125 7 740 2313 96 190 8 chr9 20366387 20366756 -103709416 + RLTR10C LTR ERVK 1 436 0 7 740 678 269 14 98 chr9 20366756 20366897 -103709275 + B3A SINE B2 74 196 -2 7 740 507 236 186 0 chr9 20367216 20367377 -103708795 - B3 SINE B2 0 216 26 7 740 564 242 136 76 chr9 20367412 20367676 -103708496 + B4 SINE B4 2 281 -11 7 740 236 333 64 54 chr9 20367915 20368213 -103707959 + MurSatRep1 Unknown Unknown 1749 2049 -88 7 740 244 336 30 30 chr9 20368160 20368292 -103707880 + MMSAT4 Satellite Satellite 37 168 0 7 740 456 248 0 19 chr9 20368372 20368479 -103707693 + PB1D10 SINE Alu 12 116 -1 7 740 929 243 15 0 chr9 20368522 20368728 -103707444 - ID_B1 SINE B4 0 224 16 7 740 451 236 75 0 chr9 20368799 20368905 -103707267 - PB1D9 SINE Alu -5 115 2 7 740 7619 68 9 46 chr9 20369364 20370085 -103706087 - Lx3_Mus LINE L1 -395 6614 5923 7 740 5714 109 25 38 chr9 20370085 20371003 -103705169 + RMER17A2 LTR ERVK 1 906 0 7 740 19643 70 6 40 chr9 20371003 20372243 -103703929 - Lx3_Mus LINE L1 -1087 5922 4752 7 740 1196 55 7 0 chr9 20372243 20372389 -103703783 - B1_Mus1 SINE Alu 0 148 2 7 740 19643 71 5 38 chr9 20372389 20373770 -103702402 - Lx3_Mus LINE L1 -1135 4751 3368 7 740 1369 81 16 26 chr9 20373770 20373961 -103702211 + B2_Mm2 SINE B2 2 190 -5 7 740 19643 71 5 38 chr9 20373961 20374175 -103701997 - Lx3_Mus LINE L1 -2519 3367 3191 7 740 586 246 90 0 chr9 20374215 20374349 -103701823 + RSINE1 SINE B4 2 147 -18 7 740 43 35 0 0 chr9 20374357 20374414 -103701758 + AT_rich Low_complexity Low_complexity 1 57 0 7 740 363 96 0 0 chr9 20374713 20374765 -103701407 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 740 3411 170 90 17 chr9 20374792 20375437 -103700735 - RLTR17 LTR ERVK 0 692 1 7 740 288 0 0 0 chr9 20375713 20375745 -103700427 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 740 909 372 50 48 chr9 20377048 20378255 -103697917 + MuLV-int LTR ERV1 2645 3854 -3752 8 740 1962 98 3 69 chr9 20378608 20378957 -103697215 + IAPLTR1a_Mm LTR ERVK 1 326 -11 8 740 2565 58 0 60 chr9 20379197 20379545 -103696627 - ORR1A2 LTR MaLR 0 327 1 8 740 360 241 51 0 chr9 20379766 20379845 -103696327 - PB1D10 SINE Alu -2 115 33 8 740 422 311 20 13 chr9 20379881 20380045 -103696127 + MLT1A1 LTR MaLR 168 376 -32 8 740 881 274 28 16 chr9 20380779 20381031 -103695141 + RLTR42-int LTR ERVK 1129 1383 -4139 8 740 385 186 0 0 chr9 20381776 20381846 -103694326 + RLTR42-int LTR ERVK 1538 1607 -3915 8 740 1770 155 82 38 chr9 20381867 20382114 -103694058 - ORR1C2 LTR MaLR 0 384 131 8 740 369 0 0 0 chr9 20382114 20382155 -103694017 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 740 1770 155 82 38 chr9 20382155 20382275 -103693897 - ORR1C2 LTR MaLR -254 130 1 8 740 350 249 53 111 chr9 20382842 20382989 -103693183 + RLTR42-int LTR ERVK 1911 2045 -3477 8 740 1249 47 0 0 chr9 20382989 20383137 -103693035 + B1_Mus1 SINE Alu 1 148 0 8 740 350 249 53 111 chr9 20383137 20383215 -103692957 + RLTR42-int LTR ERVK 2046 2123 -3399 8 740 701 200 29 190 chr9 20383782 20384159 -103692013 + L1_Rod LINE L1 3430 3753 -2094 8 740 1071 174 54 15 chr9 20384159 20384363 -103691809 + B3 SINE B2 5 216 0 8 740 729 191 17 32 chr9 20384363 20384544 -103691628 + L1_Rod LINE L1 3749 3930 -2216 8 740 455 278 118 44 chr9 20384603 20384756 -103691416 + RMER5 LTR ERV1 194 353 -181 8 740 2426 138 19 0 chr9 20384756 20385127 -103691045 - RLTR14 LTR ERV1 -4 378 1 8 740 455 278 118 44 chr9 20385127 20385244 -103690928 + RMER5 LTR ERV1 354 484 -50 8 740 555 29 0 0 chr9 20385245 20385314 -103690858 + (TC)n Simple_repeat Simple_repeat 2 70 0 8 740 468 0 0 0 chr9 20385314 20385365 -103690807 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 740 441 162 12 23 chr9 20385365 20385467 -103690705 - B1_Mus2 SINE Alu -13 107 1 8 740 285 164 13 27 chr9 20385485 20385560 -103690612 + GA-rich Low_complexity Low_complexity 1 74 0 8 740 241 178 0 0 chr9 20385614 20385659 -103690513 - B3 SINE B2 -122 94 50 8 740 422 163 130 0 chr9 20386274 20386366 -103689806 - B1_Mur2 SINE Alu -37 112 9 8 740 265 213 102 41 chr9 20386281 20386379 -103689793 - MT2B LTR ERVL -343 258 155 8 740 214 245 20 50 chr9 20386380 20386479 -103689693 + CT-rich Low_complexity Low_complexity 5 100 0 8 740 456 104 0 0 chr9 20386639 20386706 -103689466 + (A)n Simple_repeat Simple_repeat 1 67 0 8 740 210 308 149 0 chr9 20386725 20386832 -103689340 - RSINE1 SINE B4 -41 124 2 8 740 780 47 0 9 chr9 20386857 20386965 -103689207 - B1_Mm SINE Alu 0 147 41 8 740 377 68 0 33 chr9 20387010 20387071 -103689101 - B1_Mus2 SINE Alu -88 59 1 8 740 566 297 0 0 chr9 20387083 20387228 -103688944 - ID_B1 SINE B4 -2 222 78 8 740 330 260 86 48 chr9 20388116 20388221 -103687951 - RSINE1 SINE B4 -4 161 53 8 740 225 172 167 30 chr9 20388359 20388425 -103687747 + PB1D10 SINE Alu 41 115 -2 8 740 312 194 0 0 chr9 20388677 20388744 -103687428 - Lx9 LINE L1 -46 7598 7532 8 740 1139 139 80 0 chr9 20388761 20388948 -103687224 - Lx9 LINE L1 -1090 6554 6353 8 740 2791 109 7 16 chr9 20388948 20389396 -103686776 - RLTR11B LTR ERVK 0 453 10 8 740 316 260 178 0 chr9 20389415 20389584 -103686588 - Lx9 LINE L1 -1286 6358 6160 8 740 237 197 33 0 chr9 20389578 20389639 -103686533 - RMER1B Other Other -960 106 44 8 740 234 91 0 0 chr9 20389796 20389829 -103686343 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 8 740 244 246 18 0 chr9 20389950 20390007 -103686165 + PB1D9 SINE Alu 8 65 -55 8 740 474 263 93 0 chr9 20390188 20390306 -103685866 + RSINE1 SINE B4 3 131 -34 8 740 828 243 62 0 chr9 20390735 20390945 -103685227 + ID_B1 SINE B4 2 224 0 8 740 428 19 0 0 chr9 20391322 20391375 -103684797 + MTA_Mm LTR MaLR 1 53 -343 8 740 1258 34 0 0 chr9 20391430 20391578 -103684594 + B1_Mus1 SINE Alu 1 148 0 8 740 966 232 137 30 chr9 20391864 20392201 -103683971 + MTE2a LTR MaLR 1 373 -6 8 740 593 269 13 0 chr9 20392937 20393086 -103683086 + MurSatRep1 Unknown Unknown 596 746 -1391 8 740 237 169 211 0 chr9 20393283 20393354 -103682818 - Tigger7 DNA MER2_type -1934 557 472 8 740 342 274 25 74 chr9 20393348 20393390 -103682782 - PB1D10 SINE Alu -1 116 28 8 740 372 176 0 14 chr9 20393390 20393459 -103682713 - ID_B1 SINE B4 -67 157 90 8 740 342 274 25 74 chr9 20393459 20393470 -103682702 - PB1D10 SINE Alu -1 27 1 8 740 659 236 115 0 chr9 20393500 20393674 -103682498 + B3 SINE B2 2 195 -21 8 740 873 288 66 36 chr9 20393726 20393879 -103682293 - Tigger7 DNA MER2_type -2061 430 270 8 740 659 213 49 21 chr9 20393879 20394023 -103682149 - B1_Mur1 SINE Alu 0 149 2 8 740 873 288 66 36 chr9 20394023 20394280 -103681892 - Tigger7 DNA MER2_type -2222 269 8 8 740 635 177 145 8 chr9 20394367 20394498 -103681674 + B1_Mur2 SINE Alu 1 149 0 8 740 1045 143 65 0 chr9 20394502 20394670 -103681502 - B2_Mm2 SINE B2 -16 179 1 8 740 25 31 0 0 chr9 20394671 20394703 -103681469 + AT_rich Low_complexity Low_complexity 1 32 0 8 740 516 237 28 28 chr9 20395023 20395166 -103681006 + B1_Mur2 SINE Alu 7 149 0 8 740 629 252 21 0 chr9 20396050 20396193 -103679979 + RSINE1 SINE B4 9 154 -11 8 740 436 226 0 10 chr9 20396233 20396336 -103679836 - B1_Mur1 SINE Alu 0 149 48 8 740 1359 82 5 16 chr9 20396428 20396615 -103679557 - B2_Mm1a SINE B2 -8 185 1 8 740 650 169 67 8 chr9 20397049 20397168 -103679004 + B1_Mur2 SINE Alu 3 128 -21 8 740 445 121 24 0 chr9 20397179 20397262 -103678910 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 8 740 696 234 20 14 chr9 20397277 20397424 -103678748 + B1_Mur1 SINE Alu 2 149 0 8 740 264 303 23 23 chr9 20397833 20398048 -103678124 + MMSAT4 Satellite Satellite 1 215 0 8 740 259 305 7 30 chr9 20398084 20398219 -103677953 + MMSAT4 Satellite Satellite 37 168 0 8 740 278 302 23 23 chr9 20398426 20398642 -103677530 + MMSAT4 Satellite Satellite 1 216 0 8 740 261 226 0 16 chr9 20398753 20398816 -103677356 + MurSatRep1 Unknown Unknown 1736 1797 -340 8 740 448 197 130 27 chr9 20400016 20400162 -103676010 - RSINE1 SINE B4 -2 163 3 8 740 457 247 45 42 chr9 20400208 20400366 -103675806 + B3A SINE B2 41 195 0 8 740 271 376 78 34 chr9 20400366 20400688 -103675484 + MER74B LTR ERVL 205 540 -82 8 740 321 194 29 15 chr9 20400879 20400947 -103675225 - RSINE1 SINE B4 -87 78 10 8 740 343 286 54 53 chr9 20401141 20401160 -103675012 + B4 SINE B4 66 146 -146 8 740 767 163 21 21 chr9 20401160 20401304 -103674868 + B1_Mur3 SINE Alu 1 144 -5 8 740 343 286 54 53 chr9 20401304 20401323 -103674849 + B4 SINE B4 147 239 -53 8 740 2463 196 158 7 chr9 20401467 20402226 -103673946 - Lx7 LINE L1 -368 7328 6456 8 740 1946 171 33 36 chr9 20402249 20402750 -103673422 - Lx7 LINE L1 -1680 6016 5514 8 740 472 315 0 0 chr9 20402838 20402949 -103673223 + RSINE1 SINE B4 26 136 -29 8 740 276 291 13 0 chr9 20403193 20403272 -103672900 + L1MD2 LINE L1 902 981 -5566 8 740 1033 118 92 5 chr9 20403298 20403439 -103672733 - URR1A DNA MER1_type -8 218 77 8 740 381 117 0 0 chr9 20403439 20403499 -103672673 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 740 1033 118 92 5 chr9 20403499 20403552 -103672620 - URR1A DNA MER1_type -150 76 8 8 740 318 294 12 0 chr9 20403555 20403640 -103672532 + RSINE1 SINE B4 14 99 -66 8 740 234 370 37 0 chr9 20403877 20403958 -103672214 + PB1D10 SINE Alu 7 90 -27 8 740 325 198 11 11 chr9 20403962 20404049 -103672123 + (TA)n Simple_repeat Simple_repeat 2 88 0 8 740 244 250 197 0 chr9 20404055 20404131 -103672041 + PB1D10 SINE Alu 1 91 -26 8 740 396 239 147 0 chr9 20404071 20404180 -103671992 + ID_B1 SINE B4 99 223 -1 8 740 239 226 62 46 chr9 20404712 20404777 -103671395 + B1_Mur1 SINE Alu 84 149 0 8 740 528 321 19 0 chr9 20404852 20405014 -103671158 + RSINE1 SINE B4 1 165 0 8 740 827 170 13 20 chr9 20405041 20405191 -103670981 + B1_Mur4 SINE Alu 2 150 0 8 740 1170 180 9 42 chr9 20405401 20405616 -103670556 - B3 SINE B2 -8 208 1 8 740 552 271 151 20 chr9 20405727 20405979 -103670193 + B4A SINE B4 8 292 0 8 740 823 154 15 0 chr9 20405991 20406121 -103670051 - B1_Mus1 SINE Alu -15 133 2 8 740 436 250 71 0 chr9 20406162 20406274 -103669898 + PB1 SINE Alu 1 120 -7 8 740 447 186 33 44 chr9 20406347 20406437 -103669735 + PB1D9 SINE Alu 2 90 -30 8 740 337 86 0 33 chr9 20406448 20406508 -103669664 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 8 740 259 247 24 83 chr9 20406608 20406692 -103669480 + ID2 SINE ID 4 82 -1 8 740 243 0 0 0 chr9 20406930 20406957 -103669215 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 740 632 149 167 0 chr9 20406957 20407071 -103669101 - B1_Mur3 SINE Alu -9 140 8 8 740 327 292 22 11 chr9 20407204 20407294 -103668878 + RSINE1 SINE B4 69 159 -6 8 740 761 228 0 69 chr9 20407588 20407762 -103668410 + RSINE1 SINE B4 4 165 0 8 740 489 233 87 95 chr9 20407813 20408055 -103668117 + B4 SINE B4 52 291 -1 8 740 1401 77 11 0 chr9 20408081 20408263 -103667909 - B2_Mm1t SINE B2 -8 185 2 8 740 493 253 74 14 chr9 20408477 20408625 -103667547 - RSINE1 SINE B4 -6 159 3 8 740 568 276 7 0 chr9 20408658 20408803 -103667369 + RSINE1 SINE B4 11 156 -9 8 740 379 248 32 136 chr9 20408816 20408970 -103667202 + MT2B LTR ERVL 139 276 -325 8 740 756 194 0 40 chr9 20408847 20408997 -103667175 + B1_Mur1 SINE Alu 6 149 0 8 740 300 277 64 0 chr9 20409296 20409390 -103666782 - L1MA4 LINE L1 -370 5930 5831 8 740 416 188 246 72 chr9 20409424 20409562 -103666610 - RSINE1 SINE B4 0 165 4 8 740 304 309 0 0 chr9 20409595 20409676 -103666496 + RSINE1 SINE B4 2 82 -83 8 740 399 234 76 62 chr9 20409731 20409875 -103666297 - L1MA4 LINE L1 -491 5806 5662 8 740 929 212 6 0 chr9 20409882 20410052 -103666120 - B3 SINE B2 -11 205 35 8 740 822 251 56 0 chr9 20410121 20410300 -103665872 + B3 SINE B2 1 189 -27 8 740 694 232 101 6 chr9 20410359 20410528 -103665644 + B3 SINE B2 3 187 -29 8 740 228 35 0 0 chr9 20410529 20410558 -103665614 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 740 575 268 16 0 chr9 20410713 20410840 -103665332 + RSINE1 SINE B4 1 129 -36 9 740 523 224 0 0 chr9 20410853 20410960 -103665212 - PB1D9 SINE Alu -9 111 5 9 740 247 215 14 84 chr9 20411117 20411188 -103664984 + PB1D10 SINE Alu 52 117 0 9 740 234 0 0 0 chr9 20411274 20411300 -103664872 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 740 354 278 0 27 chr9 20411450 20411561 -103664611 + ID_B1 SINE B4 87 194 -30 9 740 22 80 0 0 chr9 20412375 20412425 -103663747 + AT_rich Low_complexity Low_complexity 1 50 0 9 740 585 244 62 6 chr9 20412573 20412750 -103663422 + B3A SINE B2 2 188 -10 9 740 394 282 79 97 chr9 20412891 20413056 -103663116 - RSINE1 SINE B4 -2 163 2 9 740 515 178 0 0 chr9 20413092 20413182 -103662990 - B1_Mur1 SINE Alu 0 149 60 9 740 23 33 0 0 chr9 20413184 20413214 -103662958 + AT_rich Low_complexity Low_complexity 1 30 0 9 740 1132 93 6 6 chr9 20413392 20413405 -103662767 - B2_Mm2 SINE B2 -23 172 159 9 740 189 0 0 0 chr9 20413405 20413426 -103662746 + (ATTG)n Simple_repeat Simple_repeat 1 21 0 9 740 1132 93 6 6 chr9 20413426 20413584 -103662588 - B2_Mm2 SINE B2 -37 158 1 9 740 231 322 0 0 chr9 20413584 20413642 -103662530 - B4A SINE B4 -229 63 6 9 740 304 270 122 11 chr9 20413744 20413834 -103662338 - RSINE1 SINE B4 -64 101 2 9 740 246 250 167 0 chr9 20413858 20413942 -103662230 + MER5A DNA MER1_type 4 101 -88 9 740 357 242 11 0 chr9 20413952 20414043 -103662129 - BC1_Mm scRNA scRNA -60 92 1 9 740 459 302 28 14 chr9 20414064 20414205 -103661967 - B1_Mur1 SINE Alu -5 144 2 9 740 242 330 98 20 chr9 20414478 20414580 -103661592 + PB1D10 SINE Alu 2 111 -6 9 740 748 222 78 58 chr9 20414605 20414796 -103661376 + B3A SINE B2 4 198 0 9 740 715 172 11 0 chr9 20414806 20414943 -103661229 - B1_Mus1 SINE Alu 0 150 3 9 740 828 182 176 6 chr9 20414987 20415169 -103661003 + B3 SINE B2 1 213 -3 9 740 924 211 74 20 chr9 20415193 20415396 -103660776 + B3 SINE B2 3 216 0 9 740 574 281 54 44 chr9 20415432 20415637 -103660535 + B4A SINE B4 15 221 -71 9 740 482 190 160 32 chr9 20415653 20415778 -103660394 + B1_Mur2 SINE Alu 7 147 -2 9 740 198 0 0 0 chr9 20415786 20415808 -103660364 + (A)n Simple_repeat Simple_repeat 1 22 0 9 740 464 305 7 54 chr9 20415828 20415967 -103660205 + B4A SINE B4 91 222 -70 9 740 785 298 42 25 chr9 20415967 20416253 -103659919 + B4A SINE B4 2 292 0 9 740 245 346 59 0 chr9 20416435 20416536 -103659636 - PB1D10 SINE Alu -9 108 2 9 740 332 306 40 113 chr9 20416536 20416628 -103659544 - ID SINE ID -142 82 2 9 740 1585 38 16 0 chr9 20416861 20417047 -103659125 + B2_Mm1a SINE B2 1 189 -4 9 740 766 139 49 42 chr9 20417056 20417199 -103658973 + B1_Mur4 SINE Alu 1 144 -6 9 740 225 225 141 0 chr9 20417328 20417399 -103658773 - PB1D7 SINE Alu -1 119 39 9 740 213 65 0 0 chr9 20417798 20417829 -103658343 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 740 317 277 108 63 chr9 20417955 20418113 -103658059 - B4 SINE B4 -126 166 2 9 740 647 166 27 7 chr9 20418286 20418432 -103657740 + Lx4A LINE L1 6908 7056 -2 9 740 22 56 0 0 chr9 20418432 20418468 -103657704 + AT_rich Low_complexity Low_complexity 1 36 0 9 740 417 20 0 0 chr9 20418494 20418544 -103657628 + (GA)n Simple_repeat Simple_repeat 1 50 0 9 740 305 220 77 0 chr9 20418548 20418639 -103657533 - MER31A LTR ERV1 -387 98 1 9 740 236 329 58 7 chr9 20419472 20419610 -103656562 + MMSAT4 Satellite Satellite 19 163 -5 9 740 278 229 119 0 chr9 20419724 20419842 -103656330 + MMSAT4 Satellite Satellite 22 153 -15 9 740 230 259 0 0 chr9 20419882 20419940 -103656232 + MurSatRep1 Unknown Unknown 1734 1791 -346 9 740 244 188 0 0 chr9 20419893 20419941 -103656231 + MMSAT4 Satellite Satellite 121 168 0 9 740 241 257 87 29 chr9 20419929 20420033 -103656139 + MurSatRep1 Unknown Unknown 1690 1799 -338 9 740 346 271 32 32 chr9 20420153 20420279 -103655893 + MMSAT4 Satellite Satellite 43 168 0 9 740 3173 29 18 3 chr9 20420460 20420842 -103655330 - L1Md_F2 LINE L1 0 6582 6195 9 740 1689 31 0 0 chr9 20420842 20421033 -103655139 + L1Md_F2 LINE L1 6007 6197 -385 9 740 547 264 13 26 chr9 20421798 20421950 -103654222 - ID_B1 SINE B4 -27 197 48 9 740 228 135 0 0 chr9 20422307 20422344 -103653828 + (TCC)n Simple_repeat Simple_repeat 3 39 0 9 740 340 175 275 0 chr9 20422345 20422425 -103653747 - PB1D9 SINE Alu -14 106 5 9 740 338 246 0 0 chr9 20422465 20422530 -103653642 + ID4 SINE ID 1 65 -18 9 740 330 346 10 19 chr9 20423378 20423481 -103652691 - PB1D10 SINE Alu -15 102 1 9 740 339 102 50 17 chr9 20423519 20423579 -103652593 - MERVL_2A-int LTR ERVL -50 5711 5650 9 740 263 47 0 0 chr9 20423588 20423631 -103652541 - L1_Mus2 LINE L1 0 6566 6524 9 740 4505 12 2 0 chr9 20423631 20424123 -103652049 - MT2_Mm LTR ERVL 0 493 1 9 740 321 0 0 0 chr9 20424123 20424161 -103652011 - MERVL-int LTR ERVL 0 5485 5448 9 740 362 167 46 35 chr9 20424161 20424248 -103651924 - ORR1A3-int LTR MaLR -1323 640 553 9 740 41396 16 14 0 chr9 20424248 20429535 -103646637 - MERVL-int LTR ERVL -125 5360 1 9 740 4491 14 2 0 chr9 20429535 20430027 -103646145 - MT2_Mm LTR ERVL 0 493 1 9 740 716 137 180 0 chr9 20430033 20430194 -103645978 - MERVL_2A-int LTR ERVL -100 5661 5472 9 740 201 108 0 0 chr9 20430204 20430241 -103645931 + (T)n Simple_repeat Simple_repeat 1 37 0 9 740 827 108 69 0 chr9 20430242 20430372 -103645800 - B1_Mus2 SINE Alu 0 147 9 9 740 4103 161 35 57 chr9 20430375 20430669 -103645503 - MERVL_2A-int LTR ERVL -275 5486 5198 9 740 1030 174 45 32 chr9 20430669 20430889 -103645283 + URR1A DNA MER1_type 1 223 -3 9 740 4103 161 35 57 chr9 20430889 20431403 -103644769 - MERVL_2A-int LTR ERVL -564 5197 4696 9 740 1144 97 28 0 chr9 20431405 20431581 -103644591 + B2_Mm2 SINE B2 7 187 -8 9 740 10069 157 42 18 chr9 20431581 20433174 -103642998 - MERVL_2A-int LTR ERVL -1057 4704 3067 9 740 1118 56 0 40 chr9 20433174 20433322 -103642850 + B1_Mus1 SINE Alu 2 143 -5 9 740 10069 157 42 18 chr9 20433322 20433432 -103642740 - MERVL_2A-int LTR ERVL -2695 3066 2959 9 740 1232 112 0 6 chr9 20433477 20433656 -103642516 + L1_Mm LINE L1 4674 4851 -1032 9 740 387 142 0 2 chr9 20433676 20433743 -103642429 + L1_Mm LINE L1 4995 5063 -823 9 740 2776 157 33 0 chr9 20433743 20434194 -103641978 - MERVL_2A-int LTR ERVL -3005 2756 2291 9 740 1101 150 62 17 chr9 20434194 20434489 -103641683 + ORR1B2 LTR MaLR 1 384 0 9 740 7363 157 69 59 chr9 20434489 20434830 -103641342 - MERVL_2A-int LTR ERVL -3466 2295 1950 9 740 211 28 56 0 chr9 20434830 20434866 -103641306 + (CAA)n Simple_repeat Simple_repeat 2 39 0 9 740 7363 157 69 59 chr9 20434866 20435643 -103640529 - MERVL_2A-int LTR ERVL -3812 1949 1151 9 740 993 90 20 14 chr9 20435643 20435790 -103640382 + B1_Mur4 SINE Alu 1 148 -2 9 740 7363 157 69 59 chr9 20435790 20436089 -103640083 - MERVL_2A-int LTR ERVL -4611 1150 863 9 740 1086 272 129 61 chr9 20436106 20436564 -103639608 + RLTR19 LTR ERVK 11 499 0 9 740 3668 172 82 7 chr9 20436564 20437248 -103638924 - MERVL_2A-int LTR ERVL -4880 881 147 9 740 1541 190 27 3 chr9 20437249 20437544 -103638628 - RLTR19 LTR ERVK -16 483 182 9 740 341 152 54 11 chr9 20437564 20437657 -103638515 - RMER17B LTR ERVK -501 457 361 9 740 1213 135 0 0 chr9 20437660 20437852 -103638320 - RLTR19 LTR ERVK -304 195 4 9 740 1181 61 0 20 chr9 20437903 20438053 -103638119 - B1_Mm SINE Alu 0 147 1 9 740 645 143 57 0 chr9 20438054 20438159 -103638013 - MERVL_2A-int LTR ERVL -5650 111 1 9 740 1415 186 222 90 chr9 20438159 20438690 -103637482 - MT2B LTR ERVL 0 601 1 9 740 248 128 0 0 chr9 20438924 20438963 -103637209 + B1_Mur2 SINE Alu 106 144 -5 9 740 458 250 53 0 chr9 20439041 20439173 -103636999 + RSINE1 SINE B4 11 149 -16 9 740 264 100 0 0 chr9 20439176 20439216 -103636956 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 740 369 180 307 26 chr9 20439222 20439336 -103636836 - B1_Mus1 SINE Alu -1 147 2 9 740 480 256 41 47 chr9 20439391 20439563 -103636609 + B3A SINE B2 26 196 -2 9 740 349 253 41 21 chr9 20439567 20439664 -103636508 + B1F2 SINE Alu 3 101 -48 9 740 290 266 101 0 chr9 20439689 20439768 -103636404 + RSINE1 SINE B4 49 135 -30 9 740 1264 34 0 0 chr9 20440039 20440186 -103635986 - B1_Mus2 SINE Alu 0 147 1 9 740 407 110 12 24 chr9 20440229 20440313 -103635859 + B1_Mus2 SINE Alu 65 147 0 9 740 282 56 0 0 chr9 20440313 20440349 -103635823 + (A)n Simple_repeat Simple_repeat 1 36 0 9 740 327 255 141 19 chr9 20440354 20440510 -103635662 - B4A SINE B4 -117 175 1 9 740 312 27 0 0 chr9 20440529 20440566 -103635606 + (TGGGGG)n Simple_repeat Simple_repeat 1 37 0 9 740 278 242 52 10 chr9 20440566 20440662 -103635510 - MLT1A0 LTR MaLR -231 134 35 9 740 288 0 0 0 chr9 20441113 20441145 -103635027 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 740 351 263 136 0 chr9 20441193 20441311 -103634861 - RSINE1 SINE B4 -16 149 16 9 740 236 244 136 37 chr9 20441537 20441618 -103634554 - PB1D7 SINE Alu 0 120 32 9 740 582 286 65 23 chr9 20441752 20441967 -103634205 + ID_B1 SINE B4 1 224 0 9 740 611 245 33 0 chr9 20441973 20442124 -103634048 + RSINE1 SINE B4 8 163 -2 9 740 216 269 37 49 chr9 20442469 20442551 -103633621 + BC1_Mm scRNA scRNA 6 86 -66 9 740 493 219 45 38 chr9 20443802 20443935 -103632237 + B4A SINE B4 87 220 -72 9 740 309 267 130 51 chr9 20443946 20444084 -103632088 + B1_Mur2 SINE Alu 1 149 0 9 740 299 261 25 0 chr9 20444522 20444605 -103631567 - PB1D10 SINE Alu -2 125 34 9 740 746 114 16 0 chr9 20444786 20444909 -103631263 + B1_Mur4 SINE Alu 19 143 -7 9 740 825 107 0 0 chr9 20444917 20445039 -103631133 + (GGA)n Simple_repeat Simple_repeat 3 124 0 9 740 231 36 0 0 chr9 20445084 20445112 -103631060 + (TAG)n Simple_repeat Simple_repeat 2 29 0 9 740 354 262 91 15 chr9 20445119 20445251 -103630921 + RMER5 LTR ERV1 393 534 0 9 740 651 290 37 14 chr9 20445278 20445495 -103630677 + ID_B1 SINE B4 1 222 -2 9 740 1143 41 7 0 chr9 20445613 20445759 -103630413 - B1_Mus1 SINE Alu 0 148 2 9 740 240 243 0 146 chr9 20445855 20445888 -103630284 + B4A SINE B4 65 85 -207 9 740 306 253 231 0 chr9 20445888 20445979 -103630193 + PB1D9 SINE Alu 1 112 -8 9 740 243 0 0 0 chr9 20445979 20446006 -103630166 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 740 515 268 110 5 chr9 20446095 20446280 -103629892 + ID_B1 SINE B4 14 219 -5 9 741 28 0 0 0 chr9 20447509 20447537 -103628635 + GC_rich Low_complexity Low_complexity 1 28 0 1 741 301 210 11 80 chr9 20448153 20448241 -103627931 + ID4 SINE ID 1 82 -1 1 741 324 0 0 0 chr9 20450138 20450174 -103625998 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1 741 1165 29 0 0 chr9 20450176 20450316 -103625856 - B1_Mm SINE Alu -6 141 2 1 741 24 0 0 0 chr9 20450587 20450611 -103625561 + AT_rich Low_complexity Low_complexity 1 24 0 1 741 562 230 158 24 chr9 20450622 20450787 -103625385 - B3 SINE B2 -18 198 12 1 741 270 0 0 0 chr9 20450824 20450854 -103625318 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 741 230 175 54 130 chr9 20451372 20451464 -103624708 - B1_Mur2 SINE Alu -41 108 24 1 741 1154 55 0 0 chr9 20451638 20451784 -103624388 - B1_Mus2 SINE Alu 0 147 2 1 741 460 221 97 0 chr9 20451806 20451919 -103624253 + B4 SINE B4 6 129 -163 1 741 809 290 62 109 chr9 20452049 20452536 -103623636 - MT2A LTR ERVL -69 464 1 1 741 585 294 7 7 chr9 20452629 20452776 -103623396 - RSINE1 SINE B4 -18 147 1 1 741 213 215 88 44 chr9 20452806 20452874 -103623298 - BC1_Mm scRNA scRNA -67 85 15 1 741 281 209 30 0 chr9 20452909 20452976 -103623196 - RSINE1 SINE B4 -4 161 93 1 741 2130 194 62 78 chr9 20453037 20453574 -103622598 - MT2A LTR ERVL -5 528 1 1 741 285 323 32 0 chr9 20453771 20453864 -103622308 + RSINE1 SINE B4 7 102 -63 1 741 525 239 28 7 chr9 20454281 20454424 -103621748 - B1_Mur1 SINE Alu -2 147 2 1 741 596 223 43 7 chr9 20454437 20454577 -103621595 - B1_Mm SINE Alu -1 146 2 1 741 542 164 0 0 chr9 20454784 20454887 -103621285 - B1_Mur4 SINE Alu 0 150 47 1 741 236 214 0 0 chr9 20454884 20454926 -103621246 - RSINE1 SINE B4 -106 59 18 1 741 224 246 14 55 chr9 20454972 20455045 -103621127 - MIR SINE MIR -171 91 22 1 741 427 214 136 0 chr9 20455158 20455261 -103620911 + RSINE1 SINE B4 3 119 -46 1 741 808 193 0 0 chr9 20455330 20455470 -103620702 - B1_Mus1 SINE Alu -7 141 2 1 741 369 147 605 58 chr9 20455480 20455617 -103620555 - B3 SINE B2 -3 213 2 1 741 718 199 7 21 chr9 20455625 20455638 -103620534 - B1_Mus2 SINE Alu -1 146 136 1 741 192 77 0 0 chr9 20455638 20455664 -103620508 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 741 718 199 7 21 chr9 20455664 20455794 -103620378 - B1_Mus2 SINE Alu -12 135 5 1 741 224 155 56 0 chr9 20457124 20457195 -103618977 + CT-rich Low_complexity Low_complexity 2 76 0 1 741 444 37 0 0 chr9 20457251 20457305 -103618867 + (TCC)n Simple_repeat Simple_repeat 2 55 0 1 741 198 71 0 0 chr9 20457433 20457461 -103618711 + (TTTTTA)n Simple_repeat Simple_repeat 4 31 0 1 741 352 263 67 14 chr9 20457653 20457787 -103618385 - PB1D10 SINE Alu -13 104 5 1 741 308 265 11 46 chr9 20457711 20457798 -103618374 - ID_B1 SINE B4 -63 161 78 1 741 425 224 168 0 chr9 20457834 20457941 -103618231 - RSINE1 SINE B4 -29 136 12 1 741 216 0 0 0 chr9 20457962 20457986 -103618186 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 741 198 0 0 0 chr9 20457986 20458007 -103618165 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 741 348 298 19 0 chr9 20458059 20458163 -103618009 - PB1D10 SINE Alu -11 106 1 1 741 360 191 107 0 chr9 20458323 20458407 -103617765 + B1F2 SINE Alu 1 93 -56 1 741 623 286 56 22 chr9 20458412 20458591 -103617581 - B3 SINE B2 0 216 32 1 741 276 287 16 50 chr9 20458856 20458977 -103617195 - PB1D10 SINE Alu 0 117 1 1 741 289 289 0 0 chr9 20459242 20459318 -103616854 - ID4_ SINE ID -6 77 2 1 741 238 286 86 0 chr9 20459337 20459407 -103616765 - ID_B1 SINE B4 -9 215 140 1 741 545 204 58 50 chr9 20459433 20459572 -103616600 - RSINE1 SINE B4 -22 143 4 1 741 300 130 0 73 chr9 20460081 20460126 -103616046 - MTE2a LTR MaLR 0 379 339 1 741 239 299 0 0 chr9 20460126 20460193 -103615979 + B3A SINE B2 2 68 -130 1 741 420 279 85 67 chr9 20460342 20460507 -103615665 - MTE2a LTR MaLR -46 333 166 1 741 286 258 0 0 chr9 20460518 20460584 -103615588 - MTE2a LTR MaLR -313 66 1 1 741 535 308 31 67 chr9 20460661 20460808 -103615364 + ID_B1 SINE B4 6 153 -71 1 741 625 308 0 0 chr9 20460808 20460964 -103615208 + RSINE1 SINE B4 2 157 -8 1 741 535 308 31 67 chr9 20460964 20461039 -103615133 + ID_B1 SINE B4 154 220 -4 1 741 217 261 53 32 chr9 20461143 20461238 -103614934 + MIRb SINE MIR 86 182 -86 1 741 653 264 41 10 chr9 20461410 20461605 -103614567 - B3 SINE B2 -13 203 3 1 741 385 314 150 0 chr9 20461606 20461746 -103614426 - RSINE1 SINE B4 -2 163 3 1 741 1042 184 35 5 chr9 20461766 20461968 -103614204 - B3 SINE B2 -7 209 2 1 741 303 93 0 0 chr9 20462741 20462784 -103613388 + (GTTTG)n Simple_repeat Simple_repeat 5 47 0 1 741 760 124 25 0 chr9 20462785 20462906 -103613266 - B1_Mus2 SINE Alu -2 145 22 1 741 662 302 71 6 chr9 20462930 20463113 -103613059 - ID_B1 SINE B4 -8 216 22 1 741 1097 69 0 0 chr9 20463424 20463569 -103612603 - B1_Mus2 SINE Alu -1 146 2 1 741 493 220 118 21 chr9 20463598 20463742 -103612430 - RSINE1 SINE B4 -6 159 2 1 741 1643 160 100 23 chr9 20463990 20464341 -103611831 - ORR1C1 LTR MaLR 0 378 1 1 741 222 209 0 0 chr9 20464648 20464691 -103611481 - B1F1 SINE Alu -96 53 11 1 741 279 305 42 0 chr9 20465441 20465536 -103610636 + PB1D10 SINE Alu 17 115 -2 1 741 401 267 39 19 chr9 20465885 20465988 -103610184 - RSINE1 SINE B4 -33 132 28 1 741 580 151 239 65 chr9 20470749 20470814 -103605358 - URR1B DNA MER1_type -8 217 157 1 741 1010 60 0 43 chr9 20470814 20470954 -103605218 - B1_Mus1 SINE Alu -14 134 1 1 741 580 151 239 65 chr9 20470954 20471072 -103605100 - URR1B DNA MER1_type -69 156 2 1 741 392 305 25 8 chr9 20471118 20471237 -103604935 + ID_B1 SINE B4 12 132 -92 1 741 1036 58 0 49 chr9 20471411 20471555 -103604617 - B1_Mm SINE Alu -9 138 2 1 741 220 240 30 15 chr9 20472225 20472314 -103603858 + GA-rich Low_complexity Low_complexity 1 90 0 1 741 846 241 34 10 chr9 20473398 20473607 -103602565 + B4A SINE B4 1 214 -78 1 741 559 286 30 45 chr9 20473627 20473825 -103602347 + B4 SINE B4 2 196 -96 1 741 582 201 69 35 chr9 20474218 20474362 -103601810 - B1_Mur1 SINE Alu 0 149 1 1 741 666 157 126 48 chr9 20474665 20474832 -103601340 - B2_Mm2 SINE B2 -10 185 6 1 741 1195 247 32 71 chr9 20474835 20475246 -103600926 + MTE2a LTR MaLR 1 406 -13 1 741 498 249 199 22 chr9 20475248 20475474 -103600698 - B4 SINE B4 -19 273 8 1 741 509 276 99 7 chr9 20475714 20475856 -103600316 + RSINE1 SINE B4 9 163 -2 1 741 308 239 0 28 chr9 20475913 20475985 -103600187 + B1_Mur4 SINE Alu 2 70 -47 1 741 427 171 24 0 chr9 20477450 20477532 -103598640 + ID_B1 SINE B4 79 162 -62 1 741 958 149 7 0 chr9 20477547 20477695 -103598477 + B1_Mur4 SINE Alu 2 150 0 1 741 506 238 34 34 chr9 20477698 20477846 -103598326 + B1F SINE Alu 1 148 -1 1 741 231 286 0 45 chr9 20477877 20477943 -103598229 + BC1_Mm scRNA scRNA 5 67 -85 1 741 653 268 73 0 chr9 20477890 20478069 -103598103 + ID_B1 SINE B4 15 206 -18 1 741 545 296 0 32 chr9 20478442 20478627 -103597545 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 741 269 175 0 31 chr9 20478637 20478702 -103597470 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1 741 496 246 42 8 chr9 20478709 20478828 -103597344 - B4A SINE B4 -6 286 164 1 741 482 252 0 35 chr9 20478889 20479004 -103597168 - RSINE1 SINE B4 -33 132 22 1 741 509 229 0 0 chr9 20479014 20479119 -103597053 - PB1D7 SINE Alu -15 105 1 1 741 535 219 47 31 chr9 20479369 20479496 -103596676 + ID_B1 SINE B4 95 223 -1 1 741 342 314 32 91 chr9 20479496 20479513 -103596659 + B4 SINE B4 79 223 -69 1 741 740 193 7 15 chr9 20479513 20479650 -103596522 + B1_Mur1 SINE Alu 12 147 -2 1 741 868 177 0 0 chr9 20479686 20479833 -103596339 + B1_Mus2 SINE Alu 1 147 0 1 741 180 125 0 0 chr9 20479844 20479876 -103596296 + (TAAAAA)n Simple_repeat Simple_repeat 5 36 0 1 741 513 247 51 39 chr9 20480230 20480386 -103595786 + B4 SINE B4 127 284 -8 1 741 563 303 97 53 chr9 20480427 20480674 -103595498 + B4 SINE B4 24 281 -11 1 741 845 239 16 5 chr9 20480677 20480870 -103595302 - ID_B1 SINE B4 -25 199 5 1 741 623 250 27 7 chr9 20480944 20481093 -103595079 + 7SLRNA srpRNA srpRNA 1 152 -162 1 741 870 150 0 7 chr9 20481159 20481307 -103594865 - B1_Mus1 SINE Alu 0 148 2 1 741 888 219 69 42 chr9 20481334 20481615 -103594557 + B4 SINE B4 1 292 0 1 741 287 297 176 21 chr9 20481704 20482013 -103594159 - L2a LINE L2 -255 3171 2815 1 741 639 286 19 60 chr9 20482143 20482359 -103593813 - ID_B1 SINE B4 -2 222 16 1 741 237 312 26 69 chr9 20482753 20482803 -103593369 - B2_Mm2 SINE B2 -2 193 150 1 741 375 23 0 0 chr9 20482803 20482847 -103593325 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 741 622 271 0 0 chr9 20482852 20482985 -103593187 - RSINE1 SINE B4 -19 146 14 1 741 815 160 11 44 chr9 20483005 20483205 -103592967 + B3 SINE B2 8 195 0 1 741 251 284 0 0 chr9 20483274 20483348 -103592824 + Lx8 LINE L1 7152 7225 -248 1 741 450 341 48 32 chr9 20483338 20483650 -103592522 + Lx8 LINE L1 7149 7465 -8 1 741 285 128 0 0 chr9 20483807 20483854 -103592318 + (TCTTG)n Simple_repeat Simple_repeat 3 49 0 1 741 498 196 44 9 chr9 20483887 20484000 -103592172 - B3 SINE B2 -98 118 2 1 741 230 0 0 32 chr9 20484020 20484051 -103592121 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 1 741 587 194 53 23 chr9 20484055 20484187 -103591985 - B1_Mur3 SINE Alu -13 136 1 1 741 207 0 0 0 chr9 20484200 20484223 -103591949 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 741 655 229 30 32 chr9 20484235 20484397 -103591775 - ID_B1 SINE B4 0 224 68 1 741 832 179 89 0 chr9 20484560 20484728 -103591444 - B3 SINE B2 -25 191 9 1 741 248 304 118 0 chr9 20484731 20484833 -103591339 - PB1D10 SINE Alu -2 115 2 1 741 544 242 32 8 chr9 20485524 20485649 -103590523 + RSINE1 SINE B4 2 129 -36 1 741 309 89 0 0 chr9 20485674 20485719 -103590453 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 741 558 0 0 0 chr9 20485719 20485780 -103590392 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 741 555 264 16 0 chr9 20486085 20486214 -103589958 - B3A SINE B2 -27 171 41 1 741 1395 62 0 0 chr9 20486443 20486638 -103589534 + ZP3AR Satellite Satellite 8 202 -10 1 741 240 59 0 0 chr9 20487147 20487181 -103588991 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 741 1075 76 14 0 chr9 20487184 20487328 -103588844 - B1_Mus2 SINE Alu -1 146 1 1 741 232 314 83 108 chr9 20487374 20487531 -103588641 - RSINE1 SINE B4 -9 156 4 1 741 845 150 4 4 chr9 20487869 20488122 -103588050 + (TG)n Simple_repeat Simple_repeat 1 253 0 1 741 261 233 13 40 chr9 20488123 20488199 -103587973 - RSINE1 SINE B4 0 165 92 1 741 248 0 0 30 chr9 20488231 20488264 -103587908 + (TTG)n Simple_repeat Simple_repeat 3 34 0 1 741 532 189 138 8 chr9 20488265 20488349 -103587823 - B1_Mur2 SINE Alu -9 140 47 1 741 819 80 0 0 chr9 20488349 20488461 -103587711 + (CA)n Simple_repeat Simple_repeat 2 113 0 1 741 532 189 138 8 chr9 20488461 20488499 -103587673 - B1_Mur2 SINE Alu -103 46 3 1 741 793 240 39 39 chr9 20488499 20488727 -103587445 - B4 SINE B4 -61 231 4 1 741 396 0 0 0 chr9 20488770 20488814 -103587358 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 741 652 256 77 16 chr9 20488827 20489010 -103587162 + B3 SINE B2 11 204 -12 1 741 195 114 0 0 chr9 20489067 20489102 -103587070 + (TCTCTG)n Simple_repeat Simple_repeat 6 40 0 1 741 337 258 0 20 chr9 20489123 20489222 -103586950 - RSINE1 SINE B4 -61 104 8 1 741 632 241 187 0 chr9 20489367 20489554 -103586618 - ID_B1 SINE B4 -1 223 2 1 741 264 380 47 21 chr9 20489661 20489852 -103586320 - L4 LINE RTE -187 1842 1647 1 741 242 29 29 0 chr9 20489893 20489928 -103586244 + (CCCCCT)n Simple_repeat Simple_repeat 6 41 0 1 741 285 218 34 22 chr9 20489946 20490035 -103586137 + CT-rich Low_complexity Low_complexity 2 91 0 1 741 330 278 41 0 chr9 20490036 20490133 -103586039 - PB1D7 SINE Alu 0 120 20 1 741 305 329 85 7 chr9 20490227 20490368 -103585804 + MIR SINE MIR 44 195 -67 1 741 1260 99 0 30 chr9 20490473 20490671 -103585501 - B2_Mm2 SINE B2 -2 193 2 1 741 360 222 12 12 chr9 20490678 20490760 -103585412 - ID4_ SINE ID 0 83 2 1 741 921 157 3 0 chr9 20490814 20491113 -103585059 + (TG)n Simple_repeat Simple_repeat 1 299 0 1 741 439 232 45 67 chr9 20491196 20491330 -103584842 - RSINE1 SINE B4 -33 132 2 1 741 555 241 181 5 chr9 20491330 20491516 -103584656 - B4 SINE B4 -66 226 8 1 741 406 327 31 12 chr9 20491575 20491736 -103584436 - RSINE1 SINE B4 0 165 2 1 741 555 220 59 22 chr9 20491873 20492008 -103584164 + MTE2b LTR MaLR 18 157 -222 1 741 793 201 0 0 chr9 20492023 20492167 -103584005 + MTD LTR MaLR 13 156 -263 1 741 265 248 80 88 chr9 20492140 20492183 -103583989 + MT2B LTR ERVL 122 163 -438 1 741 737 131 71 21 chr9 20492183 20492324 -103583848 + B1_Mur3 SINE Alu 1 148 -1 1 741 591 212 85 2 chr9 20492339 20492526 -103583646 + MTD LTR MaLR 200 421 0 1 741 463 309 29 1 chr9 20492526 20492686 -103583486 + MTE2b LTR MaLR 148 311 -68 1 741 735 130 0 25 chr9 20492700 20492818 -103583354 + B1_Mur4 SINE Alu 35 149 -1 1 741 24 0 0 0 chr9 20492850 20492874 -103583298 + AT_rich Low_complexity Low_complexity 1 24 0 1 741 816 169 148 0 chr9 20492885 20493068 -103583104 - B3 SINE B2 -5 211 2 1 741 576 243 20 27 chr9 20493097 20493245 -103582927 - RSINE1 SINE B4 -16 149 3 1 741 458 145 0 24 chr9 20493249 20493334 -103582838 + MTE2b LTR MaLR 297 379 0 1 741 337 285 128 72 chr9 20493392 20493420 -103582752 - B4 SINE B4 -49 243 185 1 741 607 181 112 0 chr9 20493420 20493536 -103582636 - B1_Mur1 SINE Alu -20 129 1 1 741 337 285 128 72 chr9 20493536 20493617 -103582555 - B4 SINE B4 -49 184 5 1 741 584 190 24 12 chr9 20493627 20493773 -103582399 + G-rich Low_complexity Low_complexity 6 152 0 1 741 1004 89 0 37 chr9 20493773 20493960 -103582212 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 1 741 584 190 24 12 chr9 20493960 20493983 -103582189 + G-rich Low_complexity Low_complexity 153 176 0 1 741 213 356 8 30 chr9 20494081 20494211 -103581961 - MIRb SINE MIR -109 167 47 1 741 204 233 0 23 chr9 20494452 20494496 -103581676 + CT-rich Low_complexity Low_complexity 3 45 0 1 741 228 245 28 0 chr9 20494835 20494941 -103581231 + (TTCA)n Simple_repeat Simple_repeat 3 111 0 1 741 539 125 0 0 chr9 20495002 20495082 -103581090 + URR1B DNA MER1_type 146 225 0 1 741 2194 158 69 79 chr9 20495095 20495137 -103581035 + RMER15 LTR ERVL 27 66 -509 1 741 3478 45 0 14 chr9 20495137 20495583 -103580589 + L1_Mus1 LINE L1 6127 6566 -1 1 741 2194 158 69 79 chr9 20495583 20496061 -103580111 + RMER15 LTR ERVL 67 542 -33 1 741 353 236 106 11 chr9 20496224 20496318 -103579854 + PB1D10 SINE Alu 2 104 -13 1 741 238 273 22 22 chr9 20496431 20496521 -103579651 + MLT1A1 LTR MaLR 315 404 -4 1 741 349 145 26 0 chr9 20496895 20496971 -103579201 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 741 1030 264 73 14 chr9 20497292 20497649 -103578523 - L1MD3 LINE L1 0 7995 7618 1 741 738 205 10 53 chr9 20497740 20497836 -103578336 + ZP3AR Satellite Satellite 1 91 0 1 741 840 20 0 0 chr9 20497836 20497934 -103578238 + (CCA)n Simple_repeat Simple_repeat 1 98 0 1 741 738 207 5 77 chr9 20497934 20498039 -103578133 + ZP3AR Satellite Satellite 90 182 -30 1 741 21 71 0 0 chr9 20498677 20498719 -103577453 + AT_rich Low_complexity Low_complexity 1 42 0 1 741 216 0 0 0 chr9 20498780 20498804 -103577368 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 741 557 297 7 0 chr9 20498815 20498970 -103577202 - RSINE1 SINE B4 0 165 10 1 741 225 279 0 48 chr9 20499710 20499793 -103576379 - ID4 SINE ID 0 83 5 1 741 259 273 91 0 chr9 20499901 20500000 -103576172 + MIR SINE MIR 29 136 -126 1 741 319 309 9 9 chr9 20500085 20500196 -103575976 + PB1D10 SINE Alu 6 116 -1 1 741 666 174 98 8 chr9 20500270 20500403 -103575769 + B1_Mus2 SINE Alu 2 146 -1 2 741 387 0 0 0 chr9 20500495 20500538 -103575634 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 741 589 250 29 0 chr9 20500540 20500680 -103575492 - RSINE1 SINE B4 -17 148 5 4 741 273 330 34 17 chr9 20500707 20500824 -103575348 + MIRb SINE MIR 99 217 -51 5 741 280 367 102 0 chr9 20501107 20501205 -103574967 - L2a LINE L2 -19 3407 3300 6 741 363 258 0 30 chr9 20501362 20501462 -103574710 - MLT1A1 LTR MaLR -10 398 302 7 741 325 275 103 48 chr9 20501482 20501608 -103574564 - B1F SINE Alu -15 134 2 8 741 235 258 45 0 chr9 20501858 20501924 -103574248 + ID4 SINE ID 15 83 0 9 741 306 284 0 12 chr9 20502352 20502434 -103573738 + MIR SINE MIR 68 148 -114 1 741 553 255 81 24 chr9 20502640 20502843 -103573329 + B3A SINE B2 1 197 -1 1 741 1869 138 132 40 chr9 20502866 20502950 -103573222 + MTC LTR MaLR 1 74 -347 1 741 629 206 72 6 chr9 20502950 20503116 -103573056 + B2_Mm2 SINE B2 5 181 -14 1 741 908 121 0 13 chr9 20503118 20503269 -103572903 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 1 741 1869 138 132 40 chr9 20503269 20503513 -103572659 + MTC LTR MaLR 75 359 -62 1 741 725 11 22 0 chr9 20503513 20503602 -103572570 + (TTCCC)n Simple_repeat Simple_repeat 1 91 0 1 741 1869 138 132 40 chr9 20503602 20503647 -103572525 + MTC LTR MaLR 360 411 -10 1 741 306 342 75 40 chr9 20503721 20503922 -103572250 - LTR33A_ LTR ERVL -319 212 5 1 741 205 188 21 0 chr9 20504031 20504079 -103572093 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 1 741 245 339 68 58 chr9 20504079 20504094 -103572078 - B2_Mm1t SINE B2 0 193 180 1 741 1150 68 0 0 chr9 20504094 20504240 -103571932 - B1_Mus2 SINE Alu -1 146 1 1 741 695 206 14 7 chr9 20504242 20504384 -103571788 - B1_Mur3 SINE Alu -2 147 5 2 741 245 339 68 58 chr9 20504384 20504404 -103571768 - B2_Mm1t SINE B2 -14 179 162 1 741 387 0 0 0 chr9 20504404 20504447 -103571725 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 741 609 267 93 0 chr9 20504447 20504598 -103571574 - B3A SINE B2 -34 164 1 1 741 339 212 0 76 chr9 20505102 20505194 -103570978 + ZP3AR Satellite Satellite 37 121 -91 2 741 415 285 20 81 chr9 20505725 20505874 -103570298 - B4A SINE B4 -117 175 36 2 741 209 337 0 33 chr9 20505877 20505969 -103570203 + C-rich Low_complexity Low_complexity 3 91 0 2 741 230 253 3 76 chr9 20506149 20506235 -103569937 - PB1D9 SINE Alu -7 142 54 2 741 455 321 8 0 chr9 20506236 20506367 -103569805 + MIRb SINE MIR 65 196 -72 2 741 525 156 0 0 chr9 20506886 20506982 -103569190 + (CA)n Simple_repeat Simple_repeat 1 96 0 2 741 229 250 0 0 chr9 20506982 20507038 -103569134 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 741 803 258 33 9 chr9 20507038 20507253 -103568919 - B4 SINE B4 -70 222 3 2 741 308 321 130 20 chr9 20507272 20507472 -103568700 - ID_B1 SINE B4 -2 222 1 3 741 282 210 16 16 chr9 20507474 20507537 -103568635 - ZP3AR Satellite Satellite -123 89 27 3 741 291 71 0 0 chr9 20507623 20507665 -103568507 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 741 204 154 77 0 chr9 20507704 20507743 -103568429 - MIR SINE MIR -61 147 106 3 741 420 232 239 37 chr9 20508028 20508140 -103568032 + B4A SINE B4 9 146 -146 3 741 324 0 0 0 chr9 20508140 20508176 -103567996 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 741 420 232 239 37 chr9 20508176 20508251 -103567921 + B4A SINE B4 147 234 -58 3 741 207 218 18 35 chr9 20508273 20508330 -103567842 + (CATA)n Simple_repeat Simple_repeat 3 58 0 3 741 526 275 25 18 chr9 20508985 20509148 -103567024 + RSINE1 SINE B4 2 165 0 3 741 786 184 14 7 chr9 20509279 20509421 -103566751 + RSINE1 SINE B4 4 146 -19 3 741 725 229 126 59 chr9 20509583 20509838 -103566334 + B4 SINE B4 2 273 -19 3 741 618 188 19 0 chr9 20509873 20510369 -103565803 + (CA)n Simple_repeat Simple_repeat 1 505 0 4 741 21 0 0 0 chr9 20510369 20510390 -103565782 + AT_rich Low_complexity Low_complexity 1 21 0 4 741 234 341 11 11 chr9 20510612 20510701 -103565471 - ORR1D1 LTR MaLR -280 94 6 4 741 711 0 0 0 chr9 20510747 20510826 -103565346 + (GA)n Simple_repeat Simple_repeat 1 79 0 4 741 552 240 0 0 chr9 20510865 20510986 -103565186 + ID_B1 SINE B4 104 224 0 4 741 881 203 135 125 chr9 20511193 20511256 -103564916 + MTD LTR MaLR 90 151 -268 4 741 614 187 112 0 chr9 20511256 20511390 -103564782 + B1_Mur3 SINE Alu 1 149 0 4 741 881 203 135 125 chr9 20511390 20511419 -103564753 + MTD LTR MaLR 152 152 -267 4 741 944 0 29 22 chr9 20511419 20511558 -103564614 + (GAGAA)n Simple_repeat Simple_repeat 4 143 0 4 741 881 203 135 125 chr9 20511558 20511791 -103564381 + MTD LTR MaLR 152 419 0 4 741 320 281 30 40 chr9 20512359 20512459 -103563713 - ID_B1 SINE B4 -48 176 78 4 741 1085 49 7 0 chr9 20512478 20512622 -103563550 - B2_Mm2 SINE B2 -49 146 2 4 741 657 218 93 26 chr9 20512680 20512831 -103563341 - RSINE1 SINE B4 -4 161 1 5 741 611 267 125 68 chr9 20513023 20513168 -103563004 + ORR1E LTR MaLR 3 146 -213 5 741 766 280 121 26 chr9 20513168 20513432 -103562740 - B4 SINE B4 -2 290 2 5 741 611 267 125 68 chr9 20513432 20513567 -103562605 + ORR1E LTR MaLR 147 299 -60 5 741 1009 246 101 36 chr9 20513565 20513902 -103562270 + MTE2a LTR MaLR 13 371 -8 5 741 993 268 20 68 chr9 20514041 20514251 -103561921 + B4A SINE B4 15 227 -65 5 741 487 238 98 0 chr9 20514251 20514373 -103561799 + B1F2 SINE Alu 1 134 -15 5 741 431 51 38 25 chr9 20514376 20514456 -103561716 + (ATG)n Simple_repeat Simple_repeat 2 82 0 5 741 993 268 20 68 chr9 20514456 20514533 -103561639 + B4A SINE B4 228 292 0 5 741 836 236 75 0 chr9 20514955 20515154 -103561018 - ID_B1 SINE B4 -10 214 1 5 741 305 276 28 124 chr9 20515161 20515306 -103560866 - B1F SINE Alu -18 131 1 5 741 287 131 48 16 chr9 20515325 20515387 -103560785 - MTC LTR MaLR -25 396 333 5 741 765 327 18 22 chr9 20515598 20515876 -103560296 + B4A SINE B4 15 291 -1 6 741 459 0 0 0 chr9 20515905 20515956 -103560216 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 741 423 0 0 0 chr9 20515956 20516002 -103560170 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 741 742 154 6 101 chr9 20516347 20516506 -103559666 + B1_Mur4 SINE Alu 5 148 -2 6 741 233 174 22 0 chr9 20516525 20516571 -103559601 + RSINE1 SINE B4 4 50 -115 6 741 414 0 0 0 chr9 20516613 20516659 -103559513 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 741 461 301 63 15 chr9 20516909 20517115 -103559057 + ID_B1 SINE B4 4 219 -5 6 741 531 212 18 9 chr9 20517359 20517473 -103558699 - PB1D9 SINE Alu 0 120 6 6 741 180 97 0 0 chr9 20518079 20518110 -103558062 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 6 741 231 36 0 0 chr9 20518110 20518138 -103558034 + (CAG)n Simple_repeat Simple_repeat 3 30 0 6 741 319 197 15 0 chr9 20518525 20518591 -103557581 + B4 SINE B4 121 187 -105 7 741 252 208 62 49 chr9 20518526 20518607 -103557565 + PB1D9 SINE Alu 37 118 -2 7 741 617 259 27 0 chr9 20518618 20518765 -103557407 + RSINE1 SINE B4 10 160 -5 7 741 457 303 42 37 chr9 20518804 20518825 -103557347 + B4 SINE B4 76 226 -61 7 741 806 113 8 0 chr9 20518825 20518949 -103557223 + B1_Mur4 SINE Alu 13 137 -13 7 741 249 33 0 0 chr9 20518954 20518984 -103557188 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 7 741 457 303 42 37 chr9 20518984 20519023 -103557149 + B4 SINE B4 232 267 -25 7 741 204 40 0 0 chr9 20519023 20519048 -103557124 + (CTA)n Simple_repeat Simple_repeat 2 26 0 7 741 457 303 42 37 chr9 20519048 20519073 -103557099 + B4 SINE B4 268 292 0 7 741 314 294 26 44 chr9 20519294 20519408 -103556764 + PB1 SINE Alu 1 112 -15 7 741 598 165 62 48 chr9 20519763 20519909 -103556263 - B1_Mur1 SINE Alu -1 148 1 7 741 627 243 63 11 chr9 20519909 20520084 -103556088 + B3 SINE B2 31 214 -2 7 741 421 0 0 0 chr9 20520084 20520135 -103556037 - L1Md_F2 LINE L1 -592 5990 5940 8 741 4268 58 19 14 chr9 20520135 20520717 -103555455 + L1Md_F2 LINE L1 5998 6582 0 8 741 33 56 0 0 chr9 20520746 20520800 -103555372 + AT_rich Low_complexity Low_complexity 1 54 0 8 741 285 29 0 0 chr9 20520894 20520928 -103555244 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 8 741 800 169 0 0 chr9 20521047 20521183 -103554989 - B1_Mur1 SINE Alu 0 149 14 8 741 266 263 0 0 chr9 20521387 20521444 -103554728 + CT-rich Low_complexity Low_complexity 1 57 0 8 741 537 266 16 0 chr9 20521444 20521568 -103554604 - ID_B1 SINE B4 -1 223 98 8 741 331 211 115 41 chr9 20521840 20521975 -103554197 + B4 SINE B4 2 145 -20 8 741 342 0 0 0 chr9 20521980 20522018 -103554154 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 741 1667 26 0 58 chr9 20522110 20522351 -103553821 + L1Md_F3 LINE L1 6358 6584 0 8 741 246 253 276 0 chr9 20522549 20522636 -103553536 - PB1D7 SINE Alu -2 118 8 8 741 285 338 7 87 chr9 20522586 20522735 -103553437 - ID_B1 SINE B4 -86 138 2 9 741 896 199 6 33 chr9 20522707 20522796 -103553376 - ZP3AR Satellite Satellite -35 177 89 9 741 760 192 216 166 chr9 20522796 20523039 -103553133 + ORR1D1 LTR MaLR 1 314 -60 9 741 378 0 0 0 chr9 20523039 20523081 -103553091 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 9 741 1044 93 0 0 chr9 20523091 20523230 -103552942 - B1_Mus1 SINE Alu -9 139 1 9 741 760 192 216 166 chr9 20523230 20523331 -103552841 + ORR1D1 LTR MaLR 315 374 0 9 741 896 205 6 35 chr9 20523331 20523438 -103552734 - ZP3AR Satellite Satellite -18 194 1 9 741 202 194 138 46 chr9 20523771 20523836 -103552336 - L2a LINE L2 -14 3412 3342 9 741 482 301 45 52 chr9 20523855 20524009 -103552163 + RSINE1 SINE B4 13 165 0 9 741 530 329 75 0 chr9 20524038 20524266 -103551906 + L2a LINE L2 2912 3156 -270 9 741 628 218 61 34 chr9 20524279 20524426 -103551746 - RSINE1 SINE B4 -14 151 1 9 741 369 0 0 0 chr9 20524536 20524577 -103551595 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 741 364 263 0 0 chr9 20524582 20524658 -103551514 - ID4 SINE ID -6 77 2 1 741 201 250 0 0 chr9 20524761 20524805 -103551367 + CT-rich Low_complexity Low_complexity 1 44 0 1 741 713 248 69 25 chr9 20524806 20525009 -103551163 - ID_B1 SINE B4 -9 215 4 1 741 212 200 67 0 chr9 20525602 20525647 -103550525 + RSINE1 SINE B4 77 124 -41 1 741 426 53 0 0 chr9 20525647 20525704 -103550468 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 741 625 137 161 0 chr9 20525768 20525892 -103550280 + B1_Mus2 SINE Alu 2 145 -2 1 741 474 120 0 0 chr9 20525957 20526032 -103550140 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 741 552 212 71 0 chr9 20526688 20526801 -103549371 + RSINE1 SINE B4 26 146 -19 1 741 791 182 0 26 chr9 20526880 20527032 -103549140 - B1_Mus1 SINE Alu 0 148 1 1 741 551 322 67 29 chr9 20527224 20527432 -103548740 - B4 SINE B4 -76 216 1 1 741 272 237 66 0 chr9 20527651 20527727 -103548445 - ID4_ SINE ID -2 81 1 1 741 268 284 21 34 chr9 20527755 20527879 -103548293 - MIRb SINE MIR -117 159 32 1 741 384 22 0 0 chr9 20528102 20528147 -103548025 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 741 195 42 0 0 chr9 20528147 20528170 -103548002 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 741 206 274 7 0 chr9 20528177 20528312 -103547860 + (TGGA)n Simple_repeat Simple_repeat 4 139 0 1 741 397 254 6 11 chr9 20528326 20528505 -103547667 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1 741 750 294 59 0 chr9 20528696 20528900 -103547272 - B3 SINE B2 0 216 1 1 741 223 286 0 0 chr9 20528923 20528979 -103547193 - PB1D7 SINE Alu -42 78 23 1 741 578 211 0 0 chr9 20529348 20529443 -103546729 + RSINE1 SINE B4 71 165 0 1 741 217 367 9 0 chr9 20530509 20530618 -103545554 + GA-rich Low_complexity Low_complexity 1 110 0 1 741 21 57 0 0 chr9 20531663 20531698 -103544474 + GC_rich Low_complexity Low_complexity 1 35 0 1 741 217 89 0 43 chr9 20532383 20532430 -103543742 + (CCG)n Simple_repeat Simple_repeat 1 45 0 1 741 214 151 91 36 chr9 20532557 20532612 -103543560 + MIR SINE MIR 86 143 -119 1 741 388 252 162 0 chr9 20532744 20532855 -103543317 + RSINE1 SINE B4 14 142 -23 1 741 261 243 0 26 chr9 20533000 20533076 -103543096 - B4A SINE B4 -6 286 213 1 741 575 262 121 19 chr9 20533175 20533381 -103542791 - B4A SINE B4 -61 231 5 1 741 407 327 78 26 chr9 20533593 20533747 -103542425 + RSINE1 SINE B4 3 164 -1 1 741 324 0 0 0 chr9 20533750 20533786 -103542386 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 741 189 406 10 19 chr9 20533950 20534053 -103542119 + L2a LINE L2 3027 3128 -298 1 741 305 337 10 10 chr9 20534070 20534172 -103542000 + LTR33A LTR ERVL 57 158 -362 1 741 22 56 0 0 chr9 20534208 20534244 -103541928 + AT_rich Low_complexity Low_complexity 1 36 0 1 741 290 196 18 0 chr9 20534282 20534338 -103541834 - RSINE1 SINE B4 -40 125 69 1 741 289 279 50 12 chr9 20534497 20534577 -103541595 - B4A SINE B4 -33 259 177 1 741 324 263 66 0 chr9 20534928 20535004 -103541168 - ID4_ SINE ID -2 81 1 1 741 328 214 100 0 chr9 20535018 20535088 -103541084 - ID_B1 SINE B4 -57 167 91 1 741 639 251 68 0 chr9 20535273 20535464 -103540708 + B3 SINE B2 2 205 -11 1 741 1129 92 75 6 chr9 20535486 20535660 -103540512 + B2_Mm2 SINE B2 1 186 -9 1 741 394 277 189 87 chr9 20535670 20535853 -103540319 + B4A SINE B4 1 217 -75 1 741 396 0 0 0 chr9 20535853 20535897 -103540275 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 741 394 277 189 87 chr9 20535897 20535978 -103540194 + B4A SINE B4 218 291 -1 1 741 360 0 0 0 chr9 20535979 20536019 -103540153 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 741 528 301 66 38 chr9 20536027 20536149 -103540023 + ID_B1 SINE B4 2 127 -97 1 741 315 0 0 0 chr9 20536149 20536184 -103539988 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 741 528 301 66 38 chr9 20536184 20536272 -103539900 + ID_B1 SINE B4 128 218 -6 1 741 389 252 14 54 chr9 20536600 20536747 -103539425 + L1MB8 LINE L1 5862 6002 -176 1 741 887 246 19 24 chr9 20536857 20537069 -103539103 - ID_B1 SINE B4 -3 221 11 1 741 316 280 67 17 chr9 20537083 20537108 -103539064 - B1F SINE Alu -15 134 107 1 741 423 0 0 0 chr9 20537108 20537155 -103539017 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 741 316 280 67 17 chr9 20537155 20537249 -103538923 - B1F SINE Alu -43 106 10 1 741 1615 207 176 34 chr9 20537263 20537694 -103538478 + MT2A LTR ERVL 2 498 -35 1 741 762 11 0 0 chr9 20537694 20537781 -103538391 + (TCTCCC)n Simple_repeat Simple_repeat 5 91 0 1 741 1615 207 176 34 chr9 20537781 20537815 -103538357 + MT2A LTR ERVL 499 532 -1 1 741 366 278 39 100 chr9 20537961 20538045 -103538127 - B4A SINE B4 0 292 223 1 741 760 164 6 70 chr9 20538045 20538202 -103537970 - B1_Mus1 SINE Alu -1 147 1 1 741 366 278 39 100 chr9 20538202 20538297 -103537875 - B4A SINE B4 -70 222 124 1 741 330 137 0 0 chr9 20538322 20538373 -103537799 - B4A SINE B4 -233 59 9 1 741 564 254 16 0 chr9 20538373 20538495 -103537677 - B1_Mur1 SINE Alu -7 142 19 1 741 361 317 14 40 chr9 20538495 20538516 -103537656 - ID_B1 SINE B4 -2 217 79 1 741 272 230 95 0 chr9 20538531 20538605 -103537567 + ID4 SINE ID 3 83 0 1 741 223 232 42 28 chr9 20538615 20538686 -103537486 - MIR SINE MIR -128 134 63 1 741 256 244 0 16 chr9 20538686 20538773 -103537399 + L1M2 LINE L1 4908 4988 -1158 1 741 376 281 35 14 chr9 20538776 20538910 -103537262 + B4 SINE B4 1 142 -23 1 741 1376 225 120 25 chr9 20538939 20539340 -103536832 + Lx8 LINE L1 6690 7128 -345 1 741 782 199 102 0 chr9 20539522 20539698 -103536474 + B4 SINE B4 82 275 -17 1 741 690 275 110 74 chr9 20539794 20540185 -103535987 + MTE2a LTR MaLR 1 376 -43 1 741 212 225 0 0 chr9 20540216 20540256 -103535916 + PB1 SINE Alu 24 63 -64 1 741 477 0 0 0 chr9 20540343 20540396 -103535776 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 741 466 279 139 16 chr9 20540468 20540726 -103535446 + B4A SINE B4 3 292 0 1 741 195 129 0 0 chr9 20540792 20540823 -103535349 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 741 588 98 0 0 chr9 20541037 20541139 -103535033 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 1 741 249 286 0 0 chr9 20541142 20541205 -103534967 - RSINE1 SINE B4 -19 146 84 1 741 656 206 66 0 chr9 20541226 20541362 -103534810 - B1_Mur2 SINE Alu 0 149 5 1 741 191 114 29 0 chr9 20541472 20541507 -103534665 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 741 826 163 0 26 chr9 20541508 20541659 -103534513 - B1_Mur3 SINE Alu -2 147 1 1 741 621 276 70 11 chr9 20541661 20541673 -103534499 - B3A SINE B2 0 198 185 1 741 351 0 0 0 chr9 20541673 20541712 -103534460 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 741 621 276 70 11 chr9 20541712 20541886 -103534286 - B3A SINE B2 -14 184 1 1 741 279 0 0 0 chr9 20542101 20542132 -103534040 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 741 806 246 69 0 chr9 20542134 20542337 -103533835 - ID_B1 SINE B4 -2 222 6 1 741 181 57 0 54 chr9 20542421 20542458 -103533714 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 741 740 196 34 7 chr9 20542458 20542607 -103533565 - B3 SINE B2 -61 155 3 1 741 377 171 0 13 chr9 20542814 20542891 -103533281 - ZP3AR Satellite Satellite -94 118 43 1 741 443 259 95 0 chr9 20542895 20543011 -103533161 - PB1 SINE Alu 0 127 1 1 741 598 130 178 69 chr9 20543163 20543337 -103532835 - B2_Mm2 SINE B2 -2 193 1 1 741 701 212 207 0 chr9 20543370 20543549 -103532623 - B3 SINE B2 0 216 1 1 741 677 231 41 0 chr9 20543735 20543882 -103532290 + RSINE1 SINE B4 2 154 -11 1 741 746 337 25 11 chr9 20543896 20544175 -103531997 + B4A SINE B4 10 292 0 1 741 203 233 0 0 chr9 20544201 20544244 -103531928 + (CGGGG)n Simple_repeat Simple_repeat 2 44 0 1 741 304 173 90 39 chr9 20544443 20544521 -103531651 + B4 SINE B4 146 227 -65 1 741 405 209 136 0 chr9 20544523 20544633 -103531539 + RSINE1 SINE B4 5 129 -36 1 741 858 167 0 0 chr9 20544716 20544866 -103531306 + B1_Mur4 SINE Alu 1 150 0 1 741 226 293 150 10 chr9 20545226 20545326 -103530846 + Tigger7 DNA MER2_type 1 114 -2377 1 741 318 269 10 41 chr9 20545322 20545419 -103530753 - PB1D9 SINE Alu 0 120 27 1 741 531 234 107 25 chr9 20545506 20545552 -103530620 + CYRA11_Mm Unknown Y-chromosome 115 176 -441 1 741 980 110 31 0 chr9 20545552 20545715 -103530457 - URR1A DNA MER1_type 0 226 59 1 741 299 351 0 50 chr9 20545774 20545873 -103530299 - ID_B1 SINE B4 -129 95 2 1 741 200 296 71 43 chr9 20546109 20546250 -103529922 - L2a LINE L2 -250 3176 3032 1 741 496 228 77 43 chr9 20546297 20546476 -103529696 + ID_B1 SINE B4 43 224 0 1 741 367 341 72 0 chr9 20546614 20546752 -103529420 + B4A SINE B4 2 149 -143 1 741 448 146 116 22 chr9 20547140 20547238 -103528934 + B1_Mus2 SINE Alu 40 148 -1 1 741 299 309 38 72 chr9 20547278 20547374 -103528798 + B3 SINE B2 2 141 -75 1 741 299 278 14 0 chr9 20547374 20547446 -103528726 + B4A SINE B4 218 290 -2 1 741 299 309 38 72 chr9 20547446 20547487 -103528685 + B3 SINE B2 142 203 -13 1 741 398 235 0 0 chr9 20547571 20547656 -103528516 - B3A SINE B2 -76 122 38 1 741 436 279 183 22 chr9 20547661 20547983 -103528189 + MTE2a LTR MaLR 6 379 0 1 741 401 250 18 44 chr9 20548069 20548182 -103527990 - ID_B1 SINE B4 -34 190 81 1 741 253 259 0 17 chr9 20548455 20548514 -103527658 + C-rich Low_complexity Low_complexity 1 58 0 1 741 371 235 25 34 chr9 20549204 20549323 -103526849 + MIR SINE MIR 32 149 -113 1 741 233 292 0 0 chr9 20549991 20550080 -103526092 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 741 254 268 20 47 chr9 20550722 20550871 -103525301 + C-rich Low_complexity Low_complexity 4 148 0 1 741 423 298 40 0 chr9 20551268 20551392 -103524780 + B1F1 SINE Alu 11 139 -10 2 741 332 231 0 90 chr9 20551389 20551488 -103524684 + ID_B1 SINE B4 69 158 -66 2 741 431 208 148 0 chr9 20551488 20551589 -103524583 + B1_Mur1 SINE Alu 3 118 -31 2 741 747 162 19 13 chr9 20551592 20551748 -103524424 - URR1B DNA MER1_type -4 221 65 2 741 26 0 0 0 chr9 20551795 20551821 -103524351 + AT_rich Low_complexity Low_complexity 1 26 0 2 741 302 200 111 28 chr9 20551822 20551894 -103524278 + ID_B1 SINE B4 146 223 -1 2 741 403 200 35 0 chr9 20551905 20551990 -103524182 + RSINE1 SINE B4 2 89 -76 2 741 428 0 0 19 chr9 20552438 20552491 -103523681 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 2 741 262 308 97 36 chr9 20552610 20552775 -103523397 + B4A SINE B4 118 292 0 2 741 390 42 0 0 chr9 20552851 20552899 -103523273 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 741 203 204 0 18 chr9 20552899 20552954 -103523218 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 741 784 299 25 52 chr9 20553000 20553286 -103522886 + B4A SINE B4 14 291 -1 2 741 256 280 164 20 chr9 20554036 20554181 -103521991 - B4A SINE B4 -14 278 113 2 741 1012 219 175 17 chr9 20554181 20554193 -103521979 - MTD LTR MaLR 0 419 408 2 741 810 68 0 0 chr9 20554193 20554311 -103521861 + (TG)n Simple_repeat Simple_repeat 2 119 0 2 741 1012 219 175 17 chr9 20554311 20554595 -103521577 - MTD LTR MaLR -12 407 76 2 741 467 235 13 12 chr9 20554645 20554760 -103521412 - MTD LTR MaLR -291 116 1 2 741 627 132 57 16 chr9 20554773 20554896 -103521276 - B1_Mur1 SINE Alu -1 148 21 2 741 678 44 0 0 chr9 20554901 20554991 -103521181 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 741 2452 129 80 4 chr9 20554993 20555453 -103520719 + RLTR28 LTR ERVL 9 503 -21 2 741 405 0 0 0 chr9 20555457 20555502 -103520670 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 741 503 215 80 22 chr9 20555519 20555683 -103520489 - B3A SINE B2 -30 165 11 2 741 504 177 21 0 chr9 20555688 20555784 -103520388 - B4A SINE B4 -194 98 1 2 741 297 0 0 0 chr9 20555965 20555998 -103520174 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 741 245 254 31 31 chr9 20556002 20556067 -103520105 - ORR1E LTR MaLR -294 65 1 2 741 460 322 57 92 chr9 20556239 20556468 -103519704 + LTR33A_ LTR ERVL 83 303 -228 2 741 21 36 0 0 chr9 20556574 20556602 -103519570 + AT_rich Low_complexity Low_complexity 1 28 0 2 741 467 301 34 40 chr9 20556603 20556752 -103519420 - ID_B1 SINE B4 -54 170 23 2 741 337 287 0 11 chr9 20556983 20557078 -103519094 - PB1D7 SINE Alu 0 120 27 2 741 875 210 27 85 chr9 20557469 20557693 -103518479 + B3 SINE B2 1 211 -5 2 741 799 151 0 80 chr9 20557728 20557879 -103518293 + B1_Mus1 SINE Alu 1 139 -9 2 741 413 335 102 75 chr9 20557904 20558547 -103517625 + L1M4b LINE L1 2458 3368 -3966 2 741 652 266 20 23 chr9 20558552 20558739 -103517433 + B3A SINE B2 2 184 -32 2 741 862 198 53 77 chr9 20558739 20558947 -103517225 - B3 SINE B2 -12 204 2 2 741 573 281 29 52 chr9 20558947 20558969 -103517203 + B3 SINE B2 185 206 -10 2 741 764 217 0 7 chr9 20558977 20559110 -103517062 + B1_Mus1 SINE Alu 5 137 -11 2 741 216 0 0 0 chr9 20559110 20559134 -103517038 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 741 435 216 9 110 chr9 20559643 20559752 -103516420 + RSINE1 SINE B4 68 165 0 2 741 4399 173 16 178 chr9 20559818 20560482 -103515690 + RMER1B Other Other 3 497 -569 2 741 353 110 14 0 chr9 20560482 20560555 -103515617 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 741 4399 173 16 178 chr9 20560555 20561154 -103515018 + RMER1B Other Other 498 1061 -5 2 741 225 246 15 0 chr9 20561234 20561299 -103514873 + G-rich Low_complexity Low_complexity 1 66 0 2 741 506 198 115 8 chr9 20561397 20561519 -103514653 + B1_Mur3 SINE Alu 7 141 -8 2 741 267 54 0 0 chr9 20561524 20561561 -103514611 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 2 741 230 140 80 0 chr9 20561596 20561646 -103514526 - B3A SINE B2 -144 54 1 2 741 189 0 0 0 chr9 20561816 20561837 -103514335 + (GGGTG)n Simple_repeat Simple_repeat 2 22 0 2 741 550 293 95 76 chr9 20561839 20562101 -103514071 + B4A SINE B4 19 285 -7 2 741 396 198 46 64 chr9 20562109 20562326 -103513846 + (CACAA)n Simple_repeat Simple_repeat 1 213 0 2 741 533 15 15 0 chr9 20562642 20562708 -103513464 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 741 272 338 0 0 chr9 20562914 20562991 -103513181 + CT-rich Low_complexity Low_complexity 4 80 0 2 741 579 255 52 0 chr9 20563091 20563244 -103512928 - ID_B1 SINE B4 -62 162 2 2 741 591 237 32 38 chr9 20563649 20563807 -103512365 + ID_B1 SINE B4 66 222 -2 2 741 918 142 0 0 chr9 20563813 20563961 -103512211 + B1_Mur4 SINE Alu 2 149 -1 2 741 402 288 205 34 chr9 20564001 20564207 -103511965 + B4A SINE B4 1 240 -52 2 741 659 290 60 54 chr9 20564415 20564700 -103511472 + B4A SINE B4 3 291 -1 2 741 495 252 64 6 chr9 20564743 20564899 -103511273 + RSINE1 SINE B4 1 165 0 2 741 327 216 36 89 chr9 20564919 20564933 -103511239 + MT2B LTR ERVL 152 159 -442 2 741 536 184 50 0 chr9 20564933 20565073 -103511099 + B1_Mur2 SINE Alu 2 149 0 2 741 327 145 0 0 chr9 20565081 20565150 -103511022 + (A)n Simple_repeat Simple_repeat 1 69 0 2 741 380 247 0 0 chr9 20565718 20565795 -103510377 - MIRb SINE MIR -139 129 53 2 741 481 244 53 0 chr9 20565975 20566106 -103510066 + ID_B1 SINE B4 12 149 -75 2 741 252 273 59 29 chr9 20566152 20566220 -103509952 - ID_B1 SINE B4 -13 211 142 2 741 225 178 0 0 chr9 20566252 20566297 -103509875 + GA-rich Low_complexity Low_complexity 4 48 0 2 741 378 259 252 0 chr9 20566372 20566511 -103509661 + B4A SINE B4 41 214 -78 2 741 459 0 0 0 chr9 20566515 20566566 -103509606 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 741 279 79 0 0 chr9 20566608 20566646 -103509526 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 741 235 291 0 0 chr9 20566681 20566736 -103509436 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 2 741 386 274 124 188 chr9 20567247 20567481 -103508691 + ID_B1 SINE B4 2 220 -4 2 741 522 0 0 0 chr9 20567544 20567602 -103508570 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 741 958 253 83 4 chr9 20567628 20567870 -103508302 - B4 SINE B4 -18 274 14 2 741 724 277 43 10 chr9 20567889 20568097 -103508075 - ID_B1 SINE B4 -5 219 5 2 741 239 244 121 12 chr9 20568105 20568188 -103507984 + MER2 DNA MER2_type 120 211 -134 2 741 312 221 51 13 chr9 20568200 20568278 -103507894 - ID4 SINE ID 0 83 3 2 741 733 241 12 47 chr9 20568438 20568608 -103507564 + B3 SINE B2 3 166 -50 2 741 663 54 0 0 chr9 20568609 20568701 -103507471 + (CA)n Simple_repeat Simple_repeat 2 93 0 2 741 647 221 8 0 chr9 20568702 20568829 -103507343 - B1_Mur1 SINE Alu -20 129 2 2 741 794 146 12 18 chr9 20568863 20569031 -103507141 + CT-rich Low_complexity Low_complexity 3 169 0 2 741 424 268 95 61 chr9 20569035 20569182 -103506990 - RSINE1 SINE B4 0 165 14 2 741 334 281 89 0 chr9 20569290 20569425 -103506747 + L1MB8 LINE L1 6014 6160 -18 2 741 226 279 49 0 chr9 20569592 20569653 -103506519 - PB1D10 SINE Alu -5 112 49 2 741 850 228 104 50 chr9 20569666 20569925 -103506247 + RLTR14 LTR ERV1 1 273 -109 2 741 504 0 0 0 chr9 20569994 20570050 -103506122 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 741 204 40 0 0 chr9 20570053 20570078 -103506094 + (TAG)n Simple_repeat Simple_repeat 3 27 0 2 741 463 313 71 39 chr9 20570095 20570378 -103505794 - B4A SINE B4 0 292 1 2 741 669 209 37 15 chr9 20570412 20570548 -103505624 - B1_Mur3 SINE Alu -9 140 2 2 741 225 0 0 0 chr9 20570555 20570580 -103505592 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 741 315 281 71 121 chr9 20570580 20570618 -103505554 - B4 SINE B4 -217 75 45 2 741 297 0 0 0 chr9 20570637 20570670 -103505502 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 741 477 0 0 0 chr9 20570670 20570722 -103505450 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 741 458 248 15 60 chr9 20570723 20570856 -103505316 - RSINE1 SINE B4 -31 134 8 2 741 314 260 27 0 chr9 20570997 20571070 -103505102 - ID4 SINE ID 0 83 9 2 741 278 264 21 32 chr9 20571293 20571387 -103504785 + ID_B1 SINE B4 6 98 -126 2 741 3410 210 42 60 chr9 20571387 20572200 -103503972 - RMER13B LTR ERVK 0 908 112 2 741 180 0 0 0 chr9 20572200 20572220 -103503952 + (G)n Simple_repeat Simple_repeat 1 20 0 2 741 3410 210 42 60 chr9 20572220 20572258 -103503914 - RMER13B LTR ERVK -797 111 72 2 741 269 239 30 0 chr9 20572257 20572324 -103503848 + ID_B1 SINE B4 133 201 -23 2 741 558 203 156 0 chr9 20572389 20572517 -103503655 - B1_Mur2 SINE Alu 0 149 2 2 741 979 121 50 0 chr9 20572559 20572700 -103503472 - B1_Mus1 SINE Alu 0 148 1 2 741 615 246 0 0 chr9 20572743 20572865 -103503307 - RSINE1 SINE B4 -30 135 14 2 741 1641 138 99 67 chr9 20572869 20573212 -103502960 + ORR1B1 LTR MaLR 41 394 0 2 741 951 151 0 0 chr9 20573263 20573409 -103502763 + B1_Mus2 SINE Alu 1 146 -1 2 741 834 88 14 14 chr9 20573411 20573550 -103502622 + (GAA)n Simple_repeat Simple_repeat 2 140 0 2 741 339 25 0 0 chr9 20573550 20573590 -103502582 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 741 289 320 0 0 chr9 20575834 20575909 -103500263 - ID_B1 SINE B4 -20 204 130 2 741 248 328 22 12 chr9 20576957 20577151 -103499021 + GA-rich Low_complexity Low_complexity 1 195 0 2 741 752 181 16 12 chr9 20577227 20577388 -103498784 - ID_B1 SINE B4 -41 251 90 2 741 279 175 0 0 chr9 20577656 20577713 -103498459 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 741 184 206 27 27 chr9 20577758 20577833 -103498339 + (CATA)n Simple_repeat Simple_repeat 1 75 0 3 742 463 212 233 8 chr9 20580026 20580159 -103496013 + RSINE1 SINE B4 3 165 0 3 742 22 0 0 0 chr9 20580166 20580188 -103495984 + AT_rich Low_complexity Low_complexity 1 22 0 3 742 1199 190 0 48 chr9 20581106 20581333 -103494839 + B3 SINE B2 1 216 0 3 742 491 174 86 9 chr9 20581605 20581721 -103494451 + RSINE1 SINE B4 35 159 -6 3 742 435 83 0 0 chr9 20581741 20581801 -103494371 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 742 1263 94 0 0 chr9 20581801 20581981 -103494191 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 3 742 695 223 33 49 chr9 20581986 20582017 -103494155 + B3A SINE B2 2 33 -165 3 742 2214 111 15 12 chr9 20582017 20582345 -103493827 + ORR1A4 LTR MaLR 1 329 0 3 742 695 223 33 49 chr9 20582345 20582497 -103493675 + B3A SINE B2 34 182 -16 3 742 687 286 66 9 chr9 20583545 20583757 -103492415 + B4A SINE B4 5 228 -64 3 742 794 205 42 60 chr9 20583761 20583927 -103492245 + RSINE1 SINE B4 3 165 0 3 742 180 125 0 0 chr9 20584010 20584042 -103492130 + (CATG)n Simple_repeat Simple_repeat 2 33 0 3 742 828 192 7 7 chr9 20584063 20584210 -103491962 - B1_Mur1 SINE Alu -1 148 2 3 742 1098 22 0 0 chr9 20584932 20585071 -103491101 + B1_Mus2 SINE Alu 9 147 0 3 742 594 121 0 0 chr9 20585080 20585196 -103490976 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 3 742 341 268 53 45 chr9 20585437 20585452 -103490720 + MLT1A LTR MaLR 27 41 -333 3 742 1014 255 14 9 chr9 20585452 20585670 -103490502 - ID_B1 SINE B4 -5 219 1 3 742 341 284 56 64 chr9 20585670 20585847 -103490325 + MLT1A LTR MaLR 42 229 -161 3 742 525 217 104 37 chr9 20586339 20586473 -103489699 + ID_B1 SINE B4 82 224 0 3 742 510 270 168 0 chr9 20586613 20586750 -103489422 - RSINE1 SINE B4 -2 163 4 3 742 826 265 43 89 chr9 20587231 20587617 -103488555 + RMER15 LTR ERVL 3 490 -85 3 742 837 227 0 76 chr9 20587617 20587827 -103488345 - B3A SINE B2 -3 195 2 3 742 826 289 43 117 chr9 20587827 20587909 -103488263 + RMER15 LTR ERVL 491 561 -14 3 742 204 307 241 7 chr9 20588191 20588332 -103487840 + L2 LINE L2 2907 3080 -339 3 742 268 212 11 23 chr9 20588376 20588463 -103487709 + CT-rich Low_complexity Low_complexity 4 89 0 3 742 441 302 117 23 chr9 20588660 20588924 -103487248 - B4 SINE B4 -2 290 2 3 742 404 239 118 72 chr9 20589317 20589470 -103486702 - RSINE1 SINE B4 -2 163 4 3 742 784 206 69 60 chr9 20590125 20590352 -103485820 + B4A SINE B4 1 229 -63 3 742 664 263 70 5 chr9 20590352 20590539 -103485633 + B4A SINE B4 1 199 -93 3 742 385 325 7 93 chr9 20590932 20591071 -103485101 + RSINE1 SINE B4 1 127 -38 3 742 590 336 25 12 chr9 20591113 20591357 -103484815 - MIRb SINE MIR -5 263 17 3 742 484 181 16 0 chr9 20591402 20591529 -103484643 + (CA)n Simple_repeat Simple_repeat 1 129 0 3 742 962 244 272 0 chr9 20592149 20592542 -103483630 + MTD-int LTR MaLR 1079 1578 -2 3 742 841 250 5 30 chr9 20592558 20592760 -103483412 - B3A SINE B2 0 198 2 3 742 343 309 42 51 chr9 20592760 20592935 -103483237 + MTD LTR MaLR 1 144 -275 3 742 283 310 17 121 chr9 20593137 20593368 -103482804 + L2a LINE L2 2910 3116 -271 3 742 754 238 89 5 chr9 20593468 20593658 -103482514 + ID_B1 SINE B4 17 222 -2 3 742 240 208 0 19 chr9 20593675 20593729 -103482443 + B1_Mur4 SINE Alu 4 56 -94 3 742 573 297 35 25 chr9 20593681 20593881 -103482291 + B4A SINE B4 91 292 0 3 742 470 191 22 7 chr9 20594017 20594154 -103482018 + CT-rich Low_complexity Low_complexity 3 141 0 3 742 455 208 75 0 chr9 20594410 20594516 -103481656 + RSINE1 SINE B4 6 119 -46 3 742 680 235 130 0 chr9 20594511 20594673 -103481499 - B3 SINE B2 -32 184 2 3 742 1025 178 13 78 chr9 20595101 20595332 -103480840 + B3 SINE B2 1 216 0 3 742 234 225 239 0 chr9 20595393 20595464 -103480708 + PB1D9 SINE Alu 32 119 -1 3 742 621 211 16 8 chr9 20595493 20595622 -103480550 - RSINE1 SINE B4 -21 144 15 3 742 288 266 62 0 chr9 20595644 20595708 -103480464 - B4A SINE B4 -3 289 222 3 742 569 240 70 84 chr9 20595732 20595946 -103480226 - B4A SINE B4 0 292 82 3 742 358 75 30 0 chr9 20595975 20596042 -103480130 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 742 414 241 89 0 chr9 20596065 20596177 -103479995 - B3A SINE B2 -73 125 4 3 742 259 274 82 0 chr9 20596184 20596257 -103479915 - B4A SINE B4 -213 79 1 3 742 931 244 36 9 chr9 20596257 20596477 -103479695 - B4A SINE B4 -62 230 5 3 742 292 321 9 9 chr9 20596637 20596747 -103479425 + MLT1A1 LTR MaLR 299 408 0 3 742 241 217 0 0 chr9 20596958 20597004 -103479168 + C-rich Low_complexity Low_complexity 1 46 0 3 742 360 210 44 24 chr9 20597353 20597486 -103478686 + B3A SINE B2 48 193 0 3 742 332 227 84 93 chr9 20597502 20597609 -103478563 - PB1D9 SINE Alu -7 113 8 3 742 493 205 27 0 chr9 20597741 20597853 -103478319 + ZP3AR Satellite Satellite 20 134 -78 3 742 210 294 29 0 chr9 20597815 20597883 -103478289 + ID2 SINE ID 1 70 -13 3 742 214 227 67 0 chr9 20598216 20598291 -103477881 + (CAGAGA)n Simple_repeat Simple_repeat 2 81 0 3 742 420 219 90 26 chr9 20599148 20599303 -103476869 - Tigger7 DNA MER2_type -39 2452 2288 3 742 487 200 76 43 chr9 20599325 20599470 -103476702 - B1F2 SINE Alu 0 150 28 3 742 798 309 9 9 chr9 20599502 20599724 -103476448 - ID_B1 SINE B4 0 224 3 3 742 266 245 95 61 chr9 20599724 20599745 -103476427 - PB1D10 SINE Alu -7 142 22 3 742 317 231 141 0 chr9 20599745 20599823 -103476349 - ID_B1 SINE B4 -33 191 103 3 742 312 48 0 0 chr9 20599823 20599865 -103476307 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 742 491 270 27 87 chr9 20599882 20600032 -103476140 - B1F SINE Alu -7 142 2 3 742 191 269 24 60 chr9 20600520 20600603 -103475569 + MIRb SINE MIR 63 142 -126 3 742 670 120 30 25 chr9 20600646 20600773 -103475399 + PB1D9 SINE Alu 9 149 0 3 742 302 169 34 0 chr9 20600785 20600844 -103475328 + ZP3AR Satellite Satellite 42 102 -110 3 742 230 234 0 0 chr9 20600856 20600903 -103475269 + ID4 SINE ID 37 83 0 3 742 180 0 0 0 chr9 20600973 20600993 -103475179 + (CATTT)n Simple_repeat Simple_repeat 1 20 0 3 742 671 203 422 4 chr9 20601109 20601348 -103474824 + MTD LTR MaLR 78 417 -2 3 742 397 229 41 82 chr9 20602163 20602334 -103473838 + B4 SINE B4 3 166 -126 3 742 732 88 0 26 chr9 20602382 20602498 -103473674 + B1_Mm SINE Alu 35 147 0 3 742 265 331 34 140 chr9 20602389 20602568 -103473604 + B4 SINE B4 124 283 -9 3 742 466 283 0 0 chr9 20602638 20602744 -103473428 + RSINE1 SINE B4 11 116 -49 3 742 378 0 0 0 chr9 20602750 20602792 -103473380 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 742 260 53 26 0 chr9 20603341 20603379 -103472793 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 742 331 280 0 0 chr9 20603379 20603454 -103472718 - ID4 SINE ID -8 75 1 3 742 225 0 0 0 chr9 20604032 20604057 -103472115 + (TGG)n Simple_repeat Simple_repeat 1 25 0 3 742 603 177 89 37 chr9 20604057 20604187 -103471985 - B1_Mur1 SINE Alu -7 142 5 3 742 189 0 0 0 chr9 20604197 20604218 -103471954 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 742 495 254 62 69 chr9 20604218 20604362 -103471810 - RSINE1 SINE B4 0 165 23 3 742 264 156 22 0 chr9 20604373 20604418 -103471754 - ID_B1 SINE B4 -63 161 116 3 742 715 181 60 0 chr9 20604800 20604933 -103471239 - B1_Mur1 SINE Alu 0 149 9 3 742 313 236 28 0 chr9 20604935 20605007 -103471165 + B1_Mur4 SINE Alu 8 81 -69 3 742 332 220 48 48 chr9 20604976 20605081 -103471091 - PB1D10 SINE Alu -12 105 1 3 742 638 235 13 13 chr9 20605081 20605161 -103471011 - ID SINE ID -143 81 2 3 742 758 234 232 11 chr9 20605174 20605351 -103470821 - B3 SINE B2 0 216 1 3 742 312 300 83 80 chr9 20605779 20606101 -103470071 + MLT1A1 LTR MaLR 20 396 -12 3 742 494 240 0 9 chr9 20606557 20606662 -103469510 + RSINE1 SINE B4 45 148 -17 3 742 264 292 0 40 chr9 20607195 20607209 -103468963 + B4A SINE B4 75 85 -207 3 742 463 254 34 0 chr9 20607209 20607327 -103468845 + B1F SINE Alu 1 122 -27 3 742 274 245 121 10 chr9 20607673 20607772 -103468400 + RSINE1 SINE B4 7 116 -49 3 742 318 293 110 163 chr9 20607929 20607983 -103468189 + MTEa LTR MaLR 2 53 -326 3 742 720 173 29 29 chr9 20607983 20608120 -103468052 + B1_Mur2 SINE Alu 2 138 -11 3 742 327 49 0 0 chr9 20608121 20608162 -103468010 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 3 742 318 293 110 163 chr9 20608162 20608497 -103467675 + MTEa LTR MaLR 54 372 -7 3 742 257 321 28 19 chr9 20608612 20608720 -103467452 + L2 LINE L2 2338 2446 -973 3 742 714 246 89 133 chr9 20610277 20610624 -103465548 + MTE2a LTR MaLR 14 345 -34 3 742 272 287 53 76 chr9 20610644 20610776 -103465396 - B3 SINE B2 -4 212 84 3 742 373 95 5 3 chr9 20611373 20611448 -103464724 + Lx LINE L1 6585 6650 -4 3 742 713 255 134 19 chr9 20611481 20611697 -103464475 + 7SK RNA RNA 5 245 -86 3 742 342 0 0 0 chr9 20612289 20612327 -103463845 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 742 198 0 0 0 chr9 20612327 20612348 -103463824 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 742 675 251 35 6 chr9 20612353 20612525 -103463647 - B4 SINE B4 -109 183 7 3 742 345 283 28 19 chr9 20612565 20612673 -103463499 - PB1D10 SINE Alu -7 110 2 3 742 555 302 6 25 chr9 20613132 20613295 -103462877 - RSINE1 SINE B4 0 165 6 4 742 583 254 198 0 chr9 20613322 20613519 -103462653 + MTEb LTR MaLR 144 379 0 4 742 392 248 83 55 chr9 20614577 20614722 -103461450 + ID_B1 SINE B4 68 216 -8 4 742 434 189 65 19 chr9 20616047 20616155 -103460017 - PB1D10 SINE Alu 0 117 5 4 742 674 252 13 0 chr9 20616071 20616230 -103459942 - ID_B1 SINE B4 -55 169 9 4 742 220 278 194 18 chr9 20616648 20616813 -103459359 + B2_Mm2 SINE B2 2 195 0 4 742 221 233 0 0 chr9 20617666 20617709 -103458463 + G-rich Low_complexity Low_complexity 2 44 0 4 742 630 206 42 42 chr9 20617772 20617914 -103458258 + RSINE1 SINE B4 3 144 -21 4 742 971 51 15 0 chr9 20617920 20618057 -103458115 + (CAGAGA)n Simple_repeat Simple_repeat 6 144 0 4 742 649 250 132 11 chr9 20618245 20618435 -103457737 + ID_B1 SINE B4 1 213 -11 4 742 240 35 0 0 chr9 20618583 20618612 -103457560 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 742 693 188 50 14 chr9 20618612 20618742 -103457430 - B1_Mur3 SINE Alu -13 136 1 4 742 487 318 0 0 chr9 20618752 20618884 -103457288 - ID_B1 SINE B4 -5 219 88 4 742 268 294 0 0 chr9 20618880 20618948 -103457224 - ID2 SINE ID -10 73 6 4 742 439 274 26 0 chr9 20618972 20619089 -103457083 - B1F SINE Alu -6 143 24 4 742 546 247 6 55 chr9 20619771 20619934 -103456238 + RSINE1 SINE B4 11 165 0 4 742 214 291 68 23 chr9 20619963 20620051 -103456121 + B4 SINE B4 76 167 -125 4 742 561 209 0 182 chr9 20619976 20620071 -103456101 + B1_Mur2 SINE Alu 6 70 -79 4 742 889 70 163 0 chr9 20620071 20620200 -103455972 - B1_Mur4 SINE Alu 0 150 1 4 742 561 209 0 182 chr9 20620200 20620274 -103455898 + B1_Mur2 SINE Alu 71 144 -5 4 742 828 246 40 50 chr9 20620618 20620896 -103455276 - B4A SINE B4 -16 276 2 4 742 369 164 0 0 chr9 20621586 20621659 -103454513 + CT-rich Low_complexity Low_complexity 1 73 0 4 742 306 298 12 0 chr9 20621669 20621753 -103454419 - RSINE1 SINE B4 -79 86 2 4 742 248 250 17 0 chr9 20621799 20621859 -103454313 - ID4 SINE ID -17 66 6 4 742 252 225 122 11 chr9 20622044 20622134 -103454038 + PB1D7 SINE Alu 21 120 0 4 742 522 245 13 40 chr9 20622141 20622290 -103453882 + RSINE1 SINE B4 3 147 -18 4 742 287 0 53 0 chr9 20622378 20622416 -103453756 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 742 839 153 7 7 chr9 20622471 20622616 -103453556 + B1_Mm SINE Alu 3 147 0 4 742 425 111 28 0 chr9 20623175 20623247 -103452925 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 4 742 733 250 11 51 chr9 20623256 20623433 -103452739 - B3 SINE B2 0 216 47 4 742 410 0 20 0 chr9 20623494 20623544 -103452628 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 742 807 217 92 0 chr9 20623561 20623745 -103452427 + ID_B1 SINE B4 19 219 -5 4 742 200 34 0 33 chr9 20623745 20623775 -103452397 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 742 435 255 29 0 chr9 20623779 20623881 -103452291 + PB1D10 SINE Alu 8 112 -5 4 742 244 85 0 161 chr9 20623926 20623982 -103452190 + 4.5SRNA scRNA scRNA 40 86 -8 4 742 573 129 21 0 chr9 20623932 20624025 -103452147 + B1_Mur3 SINE Alu 42 136 -13 4 742 252 0 0 0 chr9 20624027 20624055 -103452117 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 4 742 409 268 31 0 chr9 20624065 20624162 -103452010 + PB1D7 SINE Alu 21 120 0 4 742 748 131 88 0 chr9 20624248 20624385 -103451787 + B1F2 SINE Alu 1 149 0 4 742 271 223 319 0 chr9 20624389 20624483 -103451689 + B3 SINE B2 1 124 -92 4 742 539 273 23 0 chr9 20624921 20625053 -103451119 + RSINE1 SINE B4 2 136 -29 4 742 1145 43 0 0 chr9 20625098 20625236 -103450936 + B1_Mus2 SINE Alu 2 139 -8 4 742 729 85 0 0 chr9 20625278 20625384 -103450788 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 742 247 258 30 0 chr9 20625385 20625451 -103450721 - BC1_Mm scRNA scRNA -82 70 3 4 742 473 265 0 0 chr9 20625456 20625558 -103450614 - PB1D10 SINE Alu -2 115 14 4 742 491 228 186 52 chr9 20625662 20625856 -103450316 + ID_B1 SINE B4 1 220 -4 4 742 21 0 0 0 chr9 20625856 20625877 -103450295 + AT_rich Low_complexity Low_complexity 1 21 0 4 742 1011 120 97 0 chr9 20626012 20626187 -103449985 + B2_Mm1t SINE B2 2 193 0 4 742 630 99 0 0 chr9 20626191 20626282 -103449890 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 742 494 254 95 22 chr9 20626296 20626433 -103449739 + B1F2 SINE Alu 1 147 -2 4 742 565 188 0 0 chr9 20626438 20626534 -103449638 + B3 SINE B2 2 97 -119 4 742 780 253 31 10 chr9 20626629 20626825 -103449347 + B4 SINE B4 28 227 -65 4 742 441 254 50 14 chr9 20626827 20626967 -103449205 + RSINE1 SINE B4 5 149 -16 4 742 198 118 0 0 chr9 20626969 20627003 -103449169 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 742 236 250 17 0 chr9 20629004 20629064 -103447108 + RMER15 LTR ERVL 407 467 -108 4 742 879 135 28 0 chr9 20629383 20629524 -103446648 + B1_Mur2 SINE Alu 3 147 -2 4 742 226 230 40 13 chr9 20630526 20630601 -103445571 + L2b LINE L2 2497 2573 -846 4 742 465 66 0 0 chr9 20630617 20630678 -103445494 + (TCCC)n Simple_repeat Simple_repeat 3 63 0 4 742 967 116 0 7 chr9 20630817 20630964 -103445208 - B1_Mus1 SINE Alu -2 146 1 4 742 787 196 73 25 chr9 20630968 20631172 -103445000 - B3 SINE B2 0 216 3 4 742 311 370 37 37 chr9 20631372 20631560 -103444612 + L1MC4a LINE L1 5694 5881 -2001 4 742 360 152 0 0 chr9 20631657 20631723 -103444449 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 742 728 192 200 17 chr9 20631885 20632065 -103444107 - B3 SINE B2 -3 213 1 4 742 905 142 227 0 chr9 20632098 20632274 -103443898 + B3 SINE B2 1 216 0 4 742 691 235 27 21 chr9 20632297 20632484 -103443688 + B3A SINE B2 5 192 -6 4 742 371 229 0 14 chr9 20632517 20632588 -103443584 - HAL1-3A_ME LINE L1 -813 2045 1976 4 742 402 253 0 0 chr9 20632588 20632746 -103443426 + (TG)n Simple_repeat Simple_repeat 2 159 0 4 742 426 292 47 80 chr9 20632750 20632777 -103443395 - B4A SINE B4 0 292 264 4 742 900 132 0 0 chr9 20632777 20632943 -103443229 + (TG)n Simple_repeat Simple_repeat 2 167 0 4 742 426 292 47 80 chr9 20632943 20633216 -103442956 - B4A SINE B4 -29 263 3 4 742 715 168 14 55 chr9 20633264 20633409 -103442763 - B1_Mus2 SINE Alu -2 145 7 4 742 612 40 0 0 chr9 20633413 20633488 -103442684 + (TTC)n Simple_repeat Simple_repeat 3 77 0 4 742 543 69 0 0 chr9 20633488 20633560 -103442612 + (TC)n Simple_repeat Simple_repeat 2 73 0 4 742 676 273 62 0 chr9 20633602 20633796 -103442376 - ID_B1 SINE B4 -2 222 17 4 742 441 222 18 36 chr9 20634133 20634245 -103441927 - PB1 SINE Alu -14 113 4 4 742 277 264 0 24 chr9 20634252 20634337 -103441835 + L2b LINE L2 3109 3192 -195 4 742 398 228 59 10 chr9 20634602 20634704 -103441468 + B1F SINE Alu 14 120 -29 4 742 267 326 56 42 chr9 20634715 20634859 -103441313 + B4 SINE B4 2 147 -145 4 742 218 256 138 11 chr9 20634998 20635085 -103441087 + PB1 SINE Alu 4 101 -26 4 742 459 248 36 9 chr9 20635007 20635117 -103441055 + ID_B1 SINE B4 95 207 -17 4 742 308 315 0 0 chr9 20635690 20635782 -103440390 + PB1D7 SINE Alu 22 113 -7 4 742 591 262 128 0 chr9 20635812 20635999 -103440173 + ID_B1 SINE B4 12 222 -2 4 742 494 296 25 0 chr9 20636002 20636161 -103440011 + RSINE1 SINE B4 3 165 0 4 742 1654 182 73 15 chr9 20636307 20636512 -103439660 + MTD LTR MaLR 1 215 -204 4 742 1114 44 0 0 chr9 20636512 20636647 -103439525 + B1_Mm SINE Alu 1 135 -12 4 742 1278 60 0 0 chr9 20636647 20636815 -103439357 + (GAAA)n Simple_repeat Simple_repeat 2 169 0 4 742 1654 182 73 15 chr9 20636815 20637004 -103439168 + MTD LTR MaLR 216 418 -1 4 742 186 341 12 24 chr9 20637039 20637123 -103439049 + MIR SINE MIR 47 129 -133 4 742 591 200 125 2 chr9 20637309 20637501 -103438671 - ORR1D1 LTR MaLR 0 378 158 4 742 499 143 17 8 chr9 20637509 20637629 -103438543 + GA-rich Low_complexity Low_complexity 4 124 0 4 742 1000 177 63 43 chr9 20637629 20637883 -103438289 - ORR1D1 LTR MaLR -115 259 1 4 742 733 245 133 68 chr9 20637883 20638214 -103437958 - MTE2b LTR MaLR -41 338 29 4 742 492 269 51 39 chr9 20638228 20638406 -103437766 + B4 SINE B4 44 223 -69 4 742 207 194 0 0 chr9 20638409 20638445 -103437727 + GA-rich Low_complexity Low_complexity 2 37 0 4 742 783 209 13 6 chr9 20638446 20638605 -103437567 + RSINE1 SINE B4 6 165 0 4 742 230 368 108 21 chr9 20638605 20638632 -103437540 + B3 SINE B2 5 206 -10 4 742 270 220 51 0 chr9 20639020 20639079 -103437093 + RSINE1 SINE B4 63 124 -41 4 742 328 122 48 12 chr9 20639137 20639220 -103436952 + GA-rich Low_complexity Low_complexity 6 91 0 4 742 336 231 39 0 chr9 20639226 20639304 -103436868 + PB1D10 SINE Alu 1 81 -36 4 742 1214 124 16 0 chr9 20639542 20639727 -103436445 + B2_Mm2 SINE B2 2 189 -6 4 742 522 294 81 127 chr9 20639762 20639848 -103436324 - RLTR23 LTR ERV1 -13 417 324 4 742 1214 27 0 0 chr9 20639848 20639994 -103436178 - B1_Mus2 SINE Alu 0 147 2 4 742 522 294 81 127 chr9 20639994 20640340 -103435832 - RLTR23 LTR ERV1 -107 323 6 4 742 579 152 20 0 chr9 20640354 20640453 -103435719 + PB1D9 SINE Alu 20 120 0 4 742 553 270 26 26 chr9 20640462 20640618 -103435554 - RSINE1 SINE B4 -4 161 6 4 742 376 298 16 8 chr9 20640628 20640753 -103435419 - RSINE1 SINE B4 -38 127 2 4 742 375 287 0 11 chr9 20640753 20640842 -103435330 - B4A SINE B4 -204 88 1 5 742 198 118 0 0 chr9 20640863 20640897 -103435275 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 5 742 514 216 27 0 chr9 20640897 20641008 -103435164 - PB1D9 SINE Alu 0 120 7 5 742 324 94 0 0 chr9 20641017 20641070 -103435102 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 5 742 214 229 0 20 chr9 20641090 20641139 -103435033 - B1F1 SINE Alu -91 58 11 5 742 895 223 34 10 chr9 20641353 20641561 -103434611 + ID_B1 SINE B4 12 224 0 5 742 276 276 112 25 chr9 20641439 20641599 -103434573 - YREP_Mm Unknown Unknown -1518 294 121 5 742 450 0 0 0 chr9 20641683 20641733 -103434439 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 742 897 165 0 0 chr9 20642020 20642362 -103433810 + (TG)n Simple_repeat Simple_repeat 1 342 0 5 742 802 273 87 36 chr9 20642364 20642641 -103433531 - B4A SINE B4 0 292 2 5 742 498 161 0 0 chr9 20642889 20643001 -103433171 + (CTTG)n Simple_repeat Simple_repeat 4 115 0 5 742 365 252 39 0 chr9 20643001 20643104 -103433068 - PB1D9 SINE Alu -9 111 5 5 742 495 269 53 7 chr9 20643225 20643375 -103432797 - RSINE1 SINE B4 -8 157 1 5 742 1081 250 55 49 chr9 20644195 20644651 -103431521 + MT2B LTR ERVL 5 588 -13 5 742 308 287 117 0 chr9 20644893 20644987 -103431185 - MER91A DNA Tip100 -91 105 1 5 742 2486 110 56 8 chr9 20644992 20645386 -103430786 + MTC LTR MaLR 1 413 -8 5 742 544 158 53 0 chr9 20645550 20645645 -103430527 - B1_Mur2 SINE Alu -8 141 42 5 742 314 0 0 161 chr9 20645648 20645810 -103430362 + (CTCTG)n Simple_repeat Simple_repeat 5 140 0 5 742 808 213 63 32 chr9 20645866 20646055 -103430117 - B3A SINE B2 -2 196 2 5 742 825 239 74 18 chr9 20646056 20646273 -103429899 - B4A SINE B4 -62 230 2 5 742 2078 110 6 38 chr9 20646549 20646888 -103429284 - ORR1B2 LTR MaLR -8 359 32 5 742 509 317 100 61 chr9 20647979 20648308 -103427864 + ORR1E LTR MaLR 1 342 -17 5 742 268 322 91 0 chr9 20648459 20648580 -103427592 - ID_B1 SINE B4 -91 133 2 5 742 393 22 0 0 chr9 20648867 20648913 -103427259 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 742 337 312 42 119 chr9 20649116 20649204 -103426968 + B4A SINE B4 1 95 -197 5 742 942 136 38 38 chr9 20649204 20649387 -103426785 + B2_Mm2 SINE B2 2 184 -11 5 742 5476 102 27 8 chr9 20649387 20650191 -103425981 + Lx4A LINE L1 6237 7056 -2 5 742 337 312 42 119 chr9 20650191 20650263 -103425909 + B4A SINE B4 96 146 -146 5 742 411 73 0 0 chr9 20650263 20650318 -103425854 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 5 742 337 266 88 100 chr9 20650318 20650463 -103425709 + B4A SINE B4 41 216 -76 5 742 638 263 41 23 chr9 20650960 20651178 -103424994 - ID_B1 SINE B4 -1 223 2 5 742 297 364 16 0 chr9 20651766 20651885 -103424287 + B4A SINE B4 114 234 -58 5 742 923 205 77 66 chr9 20651885 20652093 -103424079 + B4A SINE B4 3 230 -62 5 742 941 138 191 11 chr9 20652093 20652276 -103423896 + B3 SINE B2 1 216 0 5 742 923 205 77 66 chr9 20652276 20652354 -103423818 + B4A SINE B4 231 292 0 5 742 237 65 0 0 chr9 20652381 20652412 -103423760 + (CTG)n Simple_repeat Simple_repeat 3 33 0 5 742 3165 67 9 20 chr9 20652482 20652923 -103423249 + L1_Mus1 LINE L1 6131 6566 -1 5 742 479 146 11 4 chr9 20653051 20653152 -103423020 + B1_Mur3 SINE Alu 46 149 0 5 742 698 195 102 18 chr9 20653297 20653464 -103422708 - B3A SINE B2 -17 181 1 5 742 230 364 107 0 chr9 20653965 20654105 -103422067 + MIRc SINE MIR 6 160 -108 5 742 300 153 12 153 chr9 20654192 20654277 -103421895 - ID4_ SINE ID -9 74 2 5 742 315 0 0 0 chr9 20654284 20654319 -103421853 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 5 742 220 253 105 95 chr9 20654324 20654429 -103421743 - PB1D7 SINE Alu 0 120 15 5 742 322 295 103 19 chr9 20654337 20654444 -103421728 - ID_B1 SINE B4 -26 198 83 5 742 443 83 0 0 chr9 20654559 20654619 -103421553 + B2_Mm2 SINE B2 30 89 -106 5 742 737 195 63 21 chr9 20654720 20654909 -103421263 + B3A SINE B2 2 198 0 5 742 1163 55 7 0 chr9 20654934 20655080 -103421092 + B1_Mus1 SINE Alu 2 148 0 5 742 293 0 0 26 chr9 20655080 20655118 -103421054 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 5 742 1010 122 0 6 chr9 20655132 20655289 -103420883 + B2_Mm2 SINE B2 2 157 -38 5 742 258 132 0 0 chr9 20655532 20655585 -103420587 + (T)n Simple_repeat Simple_repeat 1 53 0 5 742 1083 101 0 0 chr9 20655585 20655733 -103420439 - B1_Mus1 SINE Alu 0 148 1 5 742 324 264 92 28 chr9 20656149 20656258 -103419914 + PB1D10 SINE Alu 1 116 -1 5 742 959 153 0 0 chr9 20656440 20656590 -103419582 + B1_Mur4 SINE Alu 1 150 0 5 742 350 129 0 16 chr9 20656590 20656653 -103419519 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 5 742 279 0 0 0 chr9 20656725 20656756 -103419416 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 742 385 274 12 0 chr9 20656785 20656869 -103419303 + ZP3AR Satellite Satellite 48 132 -80 5 742 563 248 113 0 chr9 20657271 20657412 -103418760 + RSINE1 SINE B4 8 164 -1 5 742 1411 57 15 15 chr9 20657447 20657642 -103418530 + B2_Mm2 SINE B2 1 195 0 5 742 1294 199 122 16 chr9 20657947 20658268 -103417904 - ORR1E LTR MaLR 0 359 5 5 742 2409 164 109 6 chr9 20658628 20659125 -103417047 + RMER13A LTR ERVK 1 548 -312 5 742 327 145 0 0 chr9 20659290 20659359 -103416813 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 742 247 325 55 69 chr9 20659876 20660094 -103416078 - L2b LINE L2 -16 3410 3196 5 742 320 317 10 0 chr9 20660126 20660227 -103415945 + PB1D10 SINE Alu 2 103 -14 5 742 202 286 32 32 chr9 20660229 20660323 -103415849 + GA-rich Low_complexity Low_complexity 3 96 0 5 742 601 267 22 0 chr9 20660581 20660716 -103415456 + B1F SINE Alu 1 138 -11 5 742 279 0 0 0 chr9 20660728 20660759 -103415413 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 742 1016 134 7 0 chr9 20660764 20660913 -103415259 + B1_Mur4 SINE Alu 1 150 0 5 742 659 270 47 38 chr9 20660945 20661157 -103415015 + ID_B1 SINE B4 3 216 -8 5 742 270 0 0 0 chr9 20661255 20661285 -103414887 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 742 1095 49 14 14 chr9 20661321 20661467 -103414705 - B1_Mus1 SINE Alu -1 147 2 5 742 332 203 14 0 chr9 20662739 20662813 -103413359 + B1F SINE Alu 75 149 0 5 742 584 257 7 0 chr9 20662809 20662949 -103413223 + ZP3AR Satellite Satellite 42 182 -30 5 742 182 150 25 0 chr9 20663421 20663461 -103412711 + CT-rich Low_complexity Low_complexity 2 42 0 5 742 749 170 49 7 chr9 20663466 20663608 -103412564 - B1_Mur2 SINE Alu -1 148 1 5 742 569 273 26 7 chr9 20663650 20663801 -103412371 - RSINE1 SINE B4 -9 156 3 5 742 659 203 196 34 chr9 20664223 20664458 -103411714 - RMER15 LTR ERVL 0 575 303 5 742 260 302 114 23 chr9 20664471 20664603 -103411569 + MER91B DNA Tip100 1 144 -46 5 742 443 324 123 31 chr9 20664727 20664988 -103411184 - B4A SINE B4 -7 285 1 5 742 1625 21 0 0 chr9 20665354 20665546 -103410626 + B2_Mm1a SINE B2 2 193 0 5 742 1099 99 25 0 chr9 20665555 20665717 -103410455 + B2_Mm2 SINE B2 19 184 -11 5 742 24 32 0 0 chr9 20665806 20665837 -103410335 + AT_rich Low_complexity Low_complexity 1 31 0 5 742 1660 202 30 16 chr9 20666080 20666453 -103409719 - ORR1C1 LTR MaLR 0 378 1 5 742 182 231 18 88 chr9 20666668 20666725 -103409447 - L2 LINE L2 -1188 2231 2179 5 742 185 347 39 20 chr9 20666829 20667032 -103409140 + L2b LINE L2 2948 3154 -221 5 742 545 190 43 0 chr9 20667036 20667152 -103409020 + ZP3AR Satellite Satellite 38 158 -54 5 742 303 292 32 24 chr9 20667093 20667216 -103408956 + BC1_Mm scRNA scRNA 1 124 -28 5 742 1254 34 7 0 chr9 20667224 20667370 -103408802 + B1_Mus2 SINE Alu 1 147 0 5 742 429 312 36 0 chr9 20667607 20667745 -103408427 + RSINE1 SINE B4 2 144 -21 5 742 1152 72 0 0 chr9 20667784 20667923 -103408249 + B1_Mus1 SINE Alu 1 139 -9 5 742 198 71 0 0 chr9 20667923 20667951 -103408221 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 742 3245 194 122 3 chr9 20668036 20668640 -103407532 - RLTR33 LTR ERVK 0 678 3 5 742 869 159 27 7 chr9 20668827 20668973 -103407199 - B1_Mur3 SINE Alu 0 149 1 5 742 404 254 186 0 chr9 20669073 20669191 -103406981 + ID_B1 SINE B4 85 224 0 5 742 342 284 52 120 chr9 20669135 20669327 -103406845 + MT2B LTR ERVL 78 256 -345 5 742 781 136 0 16 chr9 20669234 20669361 -103406811 + B1_Mus1 SINE Alu 12 136 -12 5 742 450 114 0 0 chr9 20669765 20669844 -103406328 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 742 651 153 0 0 chr9 20669857 20670007 -103406165 + (TG)n Simple_repeat Simple_repeat 1 150 0 5 742 297 238 230 65 chr9 20670007 20670146 -103406026 - RSINE1 SINE B4 0 165 4 5 742 531 222 0 27 chr9 20670189 20670300 -103405872 - PB1D9 SINE Alu -1 119 12 5 742 387 197 186 54 chr9 20670300 20670318 -103405854 - ID_B1 SINE B4 -1 223 78 5 742 820 184 77 0 chr9 20670337 20670505 -103405667 - B3 SINE B2 0 216 36 5 742 755 240 0 19 chr9 20670680 20670837 -103405335 + RSINE1 SINE B4 12 165 0 5 742 330 87 0 0 chr9 20670856 20670902 -103405270 + (CAGG)n Simple_repeat Simple_repeat 1 46 0 5 742 537 244 50 0 chr9 20670903 20671022 -103405150 - B1F1 SINE Alu -19 130 6 5 742 694 234 108 6 chr9 20670916 20671092 -103405080 - ID_B1 SINE B4 -29 195 2 6 742 937 167 42 0 chr9 20671129 20671273 -103404899 - B1_Mur4 SINE Alu 0 150 1 6 742 788 288 176 17 chr9 20671278 20671904 -103404268 - L1MA5 LINE L1 0 6300 5550 6 742 307 307 9 47 chr9 20672172 20672278 -103403894 + PB1D7 SINE Alu 1 102 -18 6 742 452 230 0 0 chr9 20672278 20672365 -103403807 + ID_B1 SINE B4 112 198 -26 6 742 31 0 0 0 chr9 20672686 20672717 -103403455 + AT_rich Low_complexity Low_complexity 1 31 0 6 742 408 307 26 0 chr9 20672769 20672794 -103403378 - PB1D10 SINE Alu 0 117 6 6 742 408 262 0 0 chr9 20672794 20672878 -103403294 - ID_B1 SINE B4 -54 170 87 6 742 243 81 0 0 chr9 20672886 20672923 -103403249 - MIRc SINE MIR -117 151 115 6 742 243 0 0 0 chr9 20673527 20673554 -103402618 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 742 677 216 0 33 chr9 20674442 20674595 -103401577 - B1_Mur2 SINE Alu 0 149 2 6 742 624 157 207 46 chr9 20674985 20675159 -103401013 + B3 SINE B2 1 202 -14 6 742 327 253 53 0 chr9 20675357 20675432 -103400740 - ID4 SINE ID -2 81 3 6 742 1010 237 61 11 chr9 20676088 20676365 -103399807 - B4A SINE B4 0 292 2 6 742 488 193 0 28 chr9 20676388 20676534 -103399638 - B3A SINE B2 0 216 1 6 742 632 191 34 47 chr9 20676558 20676706 -103399466 - B1_Mur4 SINE Alu -3 147 2 6 742 518 196 28 0 chr9 20676712 20676819 -103399353 - ID_B1 SINE B4 -2 222 113 6 742 516 177 40 89 chr9 20676931 20677055 -103399117 - PB1D9 SINE Alu -2 118 1 6 742 489 281 117 0 chr9 20677097 20677268 -103398904 + ID_B1 SINE B4 4 194 -30 6 742 213 62 0 59 chr9 20677429 20677480 -103398692 + (CAGCC)n Simple_repeat Simple_repeat 4 51 0 6 742 294 29 0 0 chr9 20678161 20678196 -103397976 + (GGA)n Simple_repeat Simple_repeat 2 36 0 6 742 609 52 0 0 chr9 20678518 20678595 -103397577 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 742 472 257 35 17 chr9 20678883 20678998 -103397174 + PB1D7 SINE Alu 3 119 -1 6 742 229 224 60 0 chr9 20679002 20679069 -103397103 + ID4_ SINE ID 3 73 -10 6 742 452 228 102 8 chr9 20679215 20679343 -103396829 - ID_B1 SINE B4 -3 221 82 6 742 454 265 118 0 chr9 20679379 20679515 -103396657 - B3A SINE B2 -46 152 1 6 742 464 70 100 0 chr9 20680371 20680462 -103395710 + B1_Mus2 SINE Alu 9 147 0 6 742 650 56 22 0 chr9 20680715 20680805 -103395367 + (TCTCCC)n Simple_repeat Simple_repeat 3 94 0 6 742 276 280 142 20 chr9 20681187 20681384 -103394788 - B4A SINE B4 -22 270 50 6 742 250 246 19 45 chr9 20681412 20681505 -103394667 - PB1D10 SINE Alu -20 100 4 6 742 331 262 78 172 chr9 20681639 20681883 -103394289 + ID_B1 SINE B4 4 224 0 6 742 817 232 89 20 chr9 20681974 20682176 -103393996 + B3 SINE B2 1 216 0 6 742 962 157 0 0 chr9 20682194 20682341 -103393831 + B1_Mus2 SINE Alu 1 147 0 6 742 245 311 18 36 chr9 20683407 20683517 -103392655 - PB1D10 SINE Alu -9 108 1 6 742 205 273 0 108 chr9 20683611 20683722 -103392450 - L2a LINE L2 -363 3063 2965 6 742 409 198 19 0 chr9 20683879 20683985 -103392187 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 742 425 143 29 0 chr9 20684533 20684603 -103391569 + ZP3AR Satellite Satellite 16 87 -125 6 742 460 198 125 0 chr9 20684639 20684735 -103391437 + PB1D9 SINE Alu 5 112 -8 6 742 1017 162 44 56 chr9 20685071 20685312 -103390860 - ORR1D1 LTR MaLR 0 374 126 6 742 235 143 0 0 chr9 20685352 20685387 -103390785 + RMER10B LTR ERVL 34 68 -330 6 742 1217 61 0 0 chr9 20685416 20685563 -103390609 - B1_Mus1 SINE Alu -1 147 1 6 742 438 88 0 0 chr9 20685563 20685631 -103390541 + RMER10B LTR ERVL 56 123 -275 6 742 2237 39 3 0 chr9 20685631 20685914 -103390258 - IAPEY2_LTR LTR ERVK -42 315 32 6 742 4729 57 62 32 chr9 20685924 20686601 -103389571 - IAPEY3-int LTR ERVK 0 7680 6984 6 742 187 377 44 0 chr9 20686601 20686715 -103389457 - L3b LINE CR1 -29 453 335 6 742 3472 62 9 0 chr9 20686730 20687178 -103388994 - IAPEY3-int LTR ERVK -4991 2689 2238 6 742 9455 122 14 21 chr9 20687155 20688787 -103387385 - IAPEY3-int LTR ERVK -5698 1982 17 6 742 2548 40 0 0 chr9 20688787 20689110 -103387062 - IAPEY2_LTR LTR ERVK -3 354 32 6 742 940 185 42 33 chr9 20689117 20689329 -103386843 + RMER10B LTR ERVL 185 398 0 6 742 519 148 205 0 chr9 20689329 20689451 -103386721 - ORR1D1 LTR MaLR -227 147 1 6 742 249 150 0 0 chr9 20689466 20689506 -103386666 - MurSatRep1 Unknown Unknown -1856 281 242 6 742 2109 116 5 90 chr9 20689506 20689895 -103386277 - RLTR23 LTR ERV1 0 430 75 6 742 207 0 0 0 chr9 20689895 20689918 -103386254 + (T)n Simple_repeat Simple_repeat 1 23 0 6 742 1293 34 0 0 chr9 20689918 20690065 -103386107 - B1_Mm SINE Alu 0 147 1 6 742 1133 83 154 6 chr9 20690074 20690092 -103386080 - B2_Mm2 SINE B2 0 195 178 6 742 207 0 0 0 chr9 20690092 20690115 -103386057 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 742 1133 83 154 6 chr9 20690115 20690265 -103385907 - B2_Mm2 SINE B2 -18 177 2 6 742 243 184 0 0 chr9 20690265 20690314 -103385858 - RLTR23 LTR ERV1 -344 86 38 6 742 333 231 0 25 chr9 20690313 20690393 -103385779 + PB1D9 SINE Alu 43 120 0 6 742 730 181 53 0 chr9 20690454 20690587 -103385585 + B1_Mus1 SINE Alu 3 142 -6 6 742 1231 75 40 0 chr9 20690698 20690871 -103385301 + B2_Mm2 SINE B2 11 190 -5 6 742 781 181 235 0 chr9 20691464 20691630 -103384542 + B3 SINE B2 5 209 -7 6 742 459 298 0 95 chr9 20691652 20691752 -103384420 + RSINE1 SINE B4 3 91 -74 6 742 1173 124 62 0 chr9 20691752 20691929 -103384243 - B2_Mm2 SINE B2 -5 190 3 6 742 459 298 0 95 chr9 20691929 20691965 -103384207 + RSINE1 SINE B4 92 126 -39 6 742 1564 42 9 58 chr9 20691966 20692191 -103383981 + L1Md_F3 LINE L1 6371 6584 0 6 742 258 313 0 0 chr9 20692222 20692289 -103383883 + PB1D9 SINE Alu 5 71 -49 6 742 500 214 62 0 chr9 20692294 20692406 -103383766 + PB1D9 SINE Alu 1 119 -1 6 742 250 340 78 0 chr9 20693093 20693234 -103382938 + ID_B1 SINE B4 28 179 -45 6 742 376 291 103 0 chr9 20693272 20693389 -103382783 + RSINE1 SINE B4 9 137 -28 6 742 1687 36 0 0 chr9 20693559 20693752 -103382420 - B2_Mm1a SINE B2 0 193 1 6 742 322 203 58 0 chr9 20694538 20694607 -103381565 - ID_B1 SINE B4 -17 207 135 6 742 23 54 0 0 chr9 20697071 20697108 -103379064 + AT_rich Low_complexity Low_complexity 1 37 0 6 742 315 162 0 18 chr9 20697115 20697180 -103378992 - B2_Mm2 SINE B2 -106 110 47 6 742 969 114 127 0 chr9 20697193 20697351 -103378821 - B2_Mm1a SINE B2 -14 179 2 6 742 237 321 0 94 chr9 20697368 20697485 -103378687 - B3 SINE B2 -110 106 1 6 742 1131 82 14 0 chr9 20697892 20698038 -103378134 - B1_Mus1 SINE Alu 0 148 1 6 742 374 134 0 15 chr9 20700025 20700093 -103376079 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 742 265 337 0 63 chr9 20700821 20700916 -103375256 + B1F2 SINE Alu 1 89 -60 6 742 1143 75 0 27 chr9 20700997 20701147 -103375025 + B1_Mus2 SINE Alu 2 147 0 6 742 197 221 88 38 chr9 20701245 20701325 -103374847 + MIRc SINE MIR 91 174 -94 6 742 664 155 139 0 chr9 20701552 20701681 -103374491 + B1_Mus1 SINE Alu 1 147 -1 6 742 357 288 67 62 chr9 20701703 20701881 -103374291 + B4A SINE B4 2 180 -112 6 742 185 0 40 0 chr9 20702680 20702705 -103373467 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 742 309 330 0 19 chr9 20703329 20703434 -103372738 - PB1D7 SINE Alu -15 105 3 6 742 332 247 160 11 chr9 20703601 20703695 -103372477 - PB1 SINE Alu -19 108 1 6 742 472 177 52 0 chr9 20703937 20704033 -103372139 - RSINE1 SINE B4 -31 134 34 6 742 2010 165 12 0 chr9 20704037 20704522 -103371650 - RLTR33 LTR ERVK 0 678 148 6 742 1015 87 80 6 chr9 20704518 20704680 -103371492 - B2_Mm2 SINE B2 -20 175 2 6 742 946 138 19 0 chr9 20704682 20704841 -103371331 - RLTR33 LTR ERVK -516 162 1 6 742 674 253 13 0 chr9 20705241 20705391 -103370781 + RSINE1 SINE B4 5 156 -9 6 742 1188 64 0 0 chr9 20705591 20705731 -103370441 + B1_Mus2 SINE Alu 2 141 -6 6 742 234 0 0 0 chr9 20705732 20705758 -103370414 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 742 298 247 0 38 chr9 20706212 20706292 -103369880 + PB1D7 SINE Alu 44 120 0 6 742 616 319 5 50 chr9 20706541 20706738 -103369434 - ID_B1 SINE B4 -6 218 31 6 742 742 194 148 25 chr9 20706738 20706934 -103369238 - MTD LTR MaLR -1 418 199 6 742 517 208 115 0 chr9 20706940 20707070 -103369102 - B1_Mur2 SINE Alu -2 147 3 6 742 409 200 0 34 chr9 20707106 20707194 -103368978 - B1_Mur4 SINE Alu -52 98 14 6 742 229 213 35 138 chr9 20707118 20707205 -103368967 - MT2B LTR ERVL -361 240 163 6 742 1143 82 0 7 chr9 20707232 20707379 -103368793 + B1_Mus1 SINE Alu 1 146 -2 6 742 1344 30 114 6 chr9 20707400 20707567 -103368605 + B2_Mm2 SINE B2 1 185 -10 6 742 317 179 15 15 chr9 20708187 20708255 -103367917 + B1F SINE Alu 78 145 -4 6 742 348 243 11 2 chr9 20708279 20708389 -103367783 + PB1D7 SINE Alu 16 125 -24 6 742 1885 161 84 11 chr9 20708437 20708819 -103367353 - RMER17C LTR ERVK 0 410 1 6 92 2141 146 201 15 chr9 20708820 20709416 -103366756 - RMER17C-int LTR ERVK 0 3238 2532 6 743 529 153 107 34 chr9 20709403 20709552 -103366620 - RMER17C-int LTR ERVK -878 2360 2201 6 743 373 236 22 11 chr9 20709932 20710022 -103366150 - B1_Mus2 SINE Alu -6 141 51 6 743 308 313 94 135 chr9 20710031 20710162 -103366010 - B3 SINE B2 -11 184 61 6 743 768 64 181 16 chr9 20710162 20710289 -103365883 - B1_Mus1 SINE Alu 0 148 1 6 743 308 333 47 47 chr9 20710289 20710349 -103365823 - B3 SINE B2 -155 61 2 6 743 465 191 0 11 chr9 20710411 20710510 -103365662 + B1_Mus1 SINE Alu 1 92 -25 6 743 271 312 108 15 chr9 20710603 20710733 -103365439 + RSINE1 SINE B4 3 144 -21 6 743 254 312 0 13 chr9 20711134 20711212 -103364960 + B1F1 SINE Alu 48 124 -25 7 743 219 36 0 0 chr9 20711763 20711791 -103364381 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 7 743 328 167 33 0 chr9 20712529 20712589 -103363583 - PB1D9 SINE Alu -58 62 1 7 743 420 294 101 20 chr9 20715251 20715400 -103360772 - ID_B1 SINE B4 -44 180 20 7 743 221 324 28 0 chr9 20715506 20715577 -103360595 - PB1D10 SINE Alu -39 78 6 7 743 265 297 73 61 chr9 20715589 20715602 -103360570 - B4A SINE B4 -58 234 196 7 743 667 132 53 0 chr9 20715602 20715716 -103360456 - B1_Mus2 SINE Alu -6 141 22 7 743 265 297 73 61 chr9 20715716 20715754 -103360418 - B4A SINE B4 -58 195 68 7 743 391 235 148 0 chr9 20717636 20717751 -103358421 - ID_B1 SINE B4 -89 135 4 7 743 507 217 117 0 chr9 20717833 20717953 -103358219 + B1F2 SINE Alu 15 148 -1 7 743 524 188 292 48 chr9 20717962 20718130 -103358042 + B3 SINE B2 5 213 -3 7 743 406 277 45 0 chr9 20718689 20718801 -103357371 - PB1D7 SINE Alu 0 120 4 7 743 574 253 133 26 chr9 20718840 20719035 -103357137 - B3 SINE B2 0 216 1 7 743 222 299 104 59 chr9 20719322 20719457 -103356715 + B1F2 SINE Alu 1 141 -8 7 743 276 312 11 11 chr9 20719504 20719598 -103356574 + B1F SINE Alu 41 134 -15 7 743 428 181 36 0 chr9 20719606 20719689 -103356483 - B1_Mur4 SINE Alu -20 130 45 7 743 504 126 0 0 chr9 20719755 20719842 -103356330 + (TG)n Simple_repeat Simple_repeat 2 88 0 7 743 392 279 53 30 chr9 20723230 20723363 -103352809 + RSINE1 SINE B4 8 143 -22 7 743 582 168 45 27 chr9 20723396 20723506 -103352666 + PB1D9 SINE Alu 1 112 -8 7 743 487 239 151 55 chr9 20723582 20723728 -103352444 + B3 SINE B2 27 186 -7 7 743 504 182 8 68 chr9 20723824 20723942 -103352230 - B1_Mur4 SINE Alu -39 111 1 7 743 241 284 16 142 chr9 20723831 20723958 -103352214 - MT2B LTR ERVL -345 256 146 7 743 684 167 63 28 chr9 20724711 20724853 -103351319 - B1F2 SINE Alu 0 149 3 7 743 464 259 60 15 chr9 20724894 20725027 -103351145 + RSINE1 SINE B4 15 153 -12 7 743 466 267 8 24 chr9 20725871 20725994 -103350178 - ID_B1 SINE B4 -25 199 79 7 743 249 261 14 68 chr9 20726084 20726158 -103350014 + B1F1 SINE Alu 1 70 -79 7 743 289 282 0 40 chr9 20726969 20727043 -103349129 - ID4_ SINE ID -1 82 12 7 743 417 245 35 35 chr9 20726996 20727110 -103349062 - ZP3AR Satellite Satellite -55 157 44 7 743 221 218 0 40 chr9 20727471 20727535 -103348637 - PB1 SINE Alu -4 123 52 7 743 517 258 92 13 chr9 20727596 20727749 -103348423 + RSINE1 SINE B4 1 165 0 7 743 234 310 47 0 chr9 20729654 20729728 -103346444 + B1F SINE Alu 10 87 -62 7 743 624 230 72 0 chr9 20730164 20730303 -103345869 + B1_Mur2 SINE Alu 1 149 0 7 743 195 100 0 0 chr9 20730303 20730333 -103345839 + (A)n Simple_repeat Simple_repeat 1 30 0 7 743 340 325 28 84 chr9 20730428 20730440 -103345732 + B4A SINE B4 83 132 -160 7 743 853 134 21 0 chr9 20730440 20730582 -103345590 + B1_Mur4 SINE Alu 6 150 0 7 743 340 325 28 84 chr9 20730582 20730606 -103345566 + B4A SINE B4 133 250 -42 7 743 303 224 78 13 chr9 20730606 20730683 -103345489 + ID4_ SINE ID 1 82 -1 7 743 226 288 123 0 chr9 20731751 20731824 -103344348 + PB1D10 SINE Alu 26 107 -10 7 743 39 38 0 0 chr9 20731824 20731877 -103344295 + AT_rich Low_complexity Low_complexity 1 53 0 7 743 680 138 135 23 chr9 20731877 20732010 -103344162 + B1_Mus1 SINE Alu 1 148 0 7 743 788 148 22 0 chr9 20732133 20732268 -103343904 - B1_Mur4 SINE Alu -7 143 6 7 743 422 202 96 0 chr9 20733351 20733445 -103342727 + B3 SINE B2 105 207 -9 7 743 701 241 51 6 chr9 20733657 20733832 -103342340 + B4A SINE B4 35 217 -75 7 743 332 268 66 9 chr9 20733877 20734010 -103342162 + PB1D7 SINE Alu 10 149 0 7 743 469 277 161 12 chr9 20734024 20734192 -103341980 + B3A SINE B2 1 193 -5 7 743 358 276 16 65 chr9 20734244 20734368 -103341804 + ID_B1 SINE B4 64 181 -43 7 743 1082 103 14 0 chr9 20734857 20735002 -103341170 + B1_Mus2 SINE Alu 1 147 0 7 743 542 221 35 17 chr9 20735019 20735134 -103341038 + PB1D9 SINE Alu 1 117 -3 7 743 220 299 77 13 chr9 20735480 20735558 -103340614 + RSINE1 SINE B4 52 134 -31 7 743 291 267 54 62 chr9 20736188 20736300 -103339872 - B1F1 SINE Alu -37 112 2 7 743 331 360 12 24 chr9 20736855 20737020 -103339152 + RSINE1 SINE B4 2 164 -1 7 743 844 184 13 20 chr9 20737739 20737889 -103338283 + B1_Mur3 SINE Alu 1 149 0 7 743 525 197 172 0 chr9 20738214 20738336 -103337836 - B1_Mm SINE Alu 0 147 5 7 743 482 257 17 17 chr9 20738359 20738474 -103337698 - PB1D7 SINE Alu -5 115 1 7 743 370 229 219 0 chr9 20738511 20738616 -103337556 - RSINE1 SINE B4 -32 133 6 7 743 567 250 181 11 chr9 20738643 20738825 -103337347 - B3 SINE B2 -2 214 2 7 743 246 242 15 58 chr9 20739008 20739094 -103337078 + B1_Mur1 SINE Alu 47 133 -16 7 743 300 201 2 110 chr9 20739348 20739466 -103336706 + B1_Mur3 SINE Alu 9 148 -1 7 743 324 275 77 0 chr9 20739675 20739766 -103336406 + RSINE1 SINE B4 3 100 -65 7 743 369 172 16 0 chr9 20739832 20739896 -103336276 - ID_B1 SINE B4 -8 216 152 7 743 1053 81 7 0 chr9 20739898 20740047 -103336125 + B2_Mm2 SINE B2 3 152 -43 7 743 1107 103 0 0 chr9 20740077 20740223 -103335949 - B1_Mus1 SINE Alu 0 148 3 7 743 227 140 0 91 chr9 20740332 20740387 -103335785 + B2_Mm2 SINE B2 50 99 -96 7 743 354 98 0 0 chr9 20740427 20740478 -103335694 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 743 234 241 0 33 chr9 20740542 20740602 -103335570 - ID SINE ID -155 69 12 7 743 252 274 14 0 chr9 20740726 20740799 -103335373 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 7 743 1213 56 0 0 chr9 20741277 20741419 -103334753 + B1_Mus1 SINE Alu 1 142 -6 7 743 357 18 34 34 chr9 20741422 20741481 -103334691 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 7 743 600 244 52 0 chr9 20741716 20741851 -103334321 + B1F SINE Alu 1 142 -7 7 743 461 271 30 12 chr9 20741864 20742027 -103334145 + B3A SINE B2 6 177 -18 7 743 430 269 0 0 chr9 20742040 20742133 -103334039 + PB1D10 SINE Alu 1 93 -24 7 743 341 262 25 0 chr9 20742163 20742243 -103333929 + ID4 SINE ID 1 82 -1 7 743 308 272 49 0 chr9 20742750 20742831 -103333341 - B3A SINE B2 -26 172 88 7 743 709 226 56 35 chr9 20742878 20743075 -103333097 - B3 SINE B2 -5 211 11 7 743 874 116 47 0 chr9 20743108 20743237 -103332935 - B1_Mur4 SINE Alu -11 139 5 7 743 882 266 9 22 chr9 20743241 20743464 -103332708 - B4A SINE B4 -66 226 7 7 743 653 223 70 33 chr9 20743465 20743639 -103332533 - B3 SINE B2 -19 197 34 7 743 264 182 55 0 chr9 20743785 20743840 -103332332 + B3A SINE B2 5 62 -136 7 743 705 227 182 0 chr9 20743940 20744116 -103332056 + B3 SINE B2 4 211 -5 7 743 878 215 29 29 chr9 20744307 20744513 -103331659 - B3 SINE B2 0 216 11 7 743 479 206 10 0 chr9 20744631 20744728 -103331444 + ZP3AR Satellite Satellite 52 149 -63 7 743 279 227 80 0 chr9 20744729 20744804 -103331368 + ID4_ SINE ID 2 82 -1 7 743 273 311 46 19 chr9 20745665 20745773 -103330399 + PB1D10 SINE Alu 7 117 0 7 743 476 300 10 25 chr9 20746385 20746538 -103329634 + B1F SINE Alu 2 148 0 7 743 716 159 6 0 chr9 20746843 20747000 -103329172 + (CA)n Simple_repeat Simple_repeat 1 158 0 7 743 279 247 38 38 chr9 20747162 20747242 -103328930 + PB1 SINE Alu 46 125 -2 7 743 381 278 103 0 chr9 20747337 20747463 -103328709 - ID_B1 SINE B4 -6 218 80 7 743 816 282 24 0 chr9 20747642 20747851 -103328321 + ID_B1 SINE B4 2 215 -9 7 743 552 298 30 18 chr9 20748889 20749053 -103327119 + ID_B1 SINE B4 27 192 -32 7 743 225 322 53 11 chr9 20749473 20749518 -103326654 + ID SINE ID 34 82 -142 7 743 233 211 236 14 chr9 20749518 20749590 -103326582 + PB1D10 SINE Alu 1 88 -29 7 743 349 339 0 9 chr9 20749731 20749844 -103326328 + PB1D10 SINE Alu 1 112 -5 7 743 369 244 51 114 chr9 20749973 20750149 -103326023 + MT2B LTR ERVL 100 264 -337 7 743 804 130 43 0 chr9 20750043 20750181 -103325991 + B1_Mur3 SINE Alu 5 148 -1 7 743 236 231 63 13 chr9 20750556 20750635 -103325537 - ID4_ SINE ID 0 83 1 7 743 320 331 96 61 chr9 20750691 20750971 -103325201 + MLT1E2 LTR MaLR 4 293 -334 7 743 400 288 9 9 chr9 20751046 20751151 -103325021 + ID_B1 SINE B4 82 186 -38 7 743 460 240 61 61 chr9 20751220 20751290 -103324882 + B4A SINE B4 128 198 -94 7 743 945 148 58 29 chr9 20751290 20751464 -103324708 - B2_Mm2 SINE B2 -15 180 2 7 743 460 240 61 61 chr9 20751464 20751557 -103324615 + B4A SINE B4 199 291 -1 7 743 249 33 0 0 chr9 20751580 20751610 -103324562 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 743 332 381 15 7 chr9 20751610 20751745 -103324427 + RSINE1 SINE B4 2 137 -28 7 743 234 300 90 0 chr9 20751877 20751977 -103324195 + PB1D7 SINE Alu 12 120 0 7 743 615 173 94 36 chr9 20751988 20752126 -103324046 + B1_Mus2 SINE Alu 2 147 0 7 743 376 206 91 27 chr9 20752415 20752525 -103323647 + PB1D10 SINE Alu 1 117 0 8 743 371 248 31 100 chr9 20752876 20753006 -103323166 + B3A SINE B2 67 187 -11 8 743 1264 14 0 14 chr9 20753045 20753193 -103322979 + B1_Mm SINE Alu 1 146 -1 8 743 309 253 58 0 chr9 20753492 20753579 -103322593 + ID_B1 SINE B4 126 217 -7 8 743 326 245 178 9 chr9 20753768 20753875 -103322297 + B1_Mur2 SINE Alu 25 149 0 8 743 258 32 0 0 chr9 20754069 20754100 -103322072 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 8 743 731 224 41 14 chr9 20754110 20754255 -103321917 + B1_Mur1 SINE Alu 1 149 0 8 743 286 353 109 0 chr9 20754266 20754385 -103321787 + RSINE1 SINE B4 8 139 -26 8 743 277 328 40 95 chr9 20754413 20754561 -103321611 + RSINE1 SINE B4 14 153 -12 8 743 197 86 57 0 chr9 20754597 20754632 -103321540 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 8 743 296 293 194 8 chr9 20755041 20755175 -103320997 + RSINE1 SINE B4 2 160 -5 8 743 369 298 97 22 chr9 20755401 20755535 -103320637 + ID_B1 SINE B4 81 224 0 8 743 214 305 17 0 chr9 20755741 20755800 -103320372 + B4A SINE B4 85 144 -148 8 743 245 291 2 13 chr9 20755748 20755838 -103320334 + B1F2 SINE Alu 8 97 -52 8 743 778 220 36 31 chr9 20757471 20757663 -103318509 + B3A SINE B2 5 197 -1 8 743 305 247 61 55 chr9 20757670 20757787 -103318385 + B1_Mur4 SINE Alu 1 120 0 8 743 732 159 27 27 chr9 20757787 20757936 -103318236 + B1_Mur4 SINE Alu 1 149 -1 8 743 251 311 9 112 chr9 20758075 20758191 -103317981 - ID_B1 SINE B4 -28 196 93 8 743 1439 39 66 6 chr9 20758893 20759076 -103317096 + B2_Mm2 SINE B2 1 194 -1 8 743 256 311 78 7 chr9 20759081 20759190 -103316982 + B1F1 SINE Alu 1 107 -10 8 743 336 64 0 0 chr9 20759194 20759241 -103316931 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 8 743 1196 61 7 0 chr9 20759269 20759416 -103316756 + B1_Mus1 SINE Alu 1 148 0 8 743 497 119 18 0 chr9 20759486 20759595 -103316577 + (CAGAGA)n Simple_repeat Simple_repeat 2 112 0 8 743 246 254 227 8 chr9 20760015 20760134 -103316038 + RSINE1 SINE B4 3 147 -18 8 743 441 0 0 0 chr9 20760161 20760210 -103315962 + (TA)n Simple_repeat Simple_repeat 1 49 0 8 743 233 133 43 43 chr9 20760586 20760633 -103315539 - MER58A DNA MER1_type -141 83 37 8 743 1223 48 0 7 chr9 20760732 20760880 -103315292 - B1_Mus2 SINE Alu 0 147 1 8 743 234 155 0 55 chr9 20761148 20761257 -103314915 + T-rich Low_complexity Low_complexity 3 105 0 8 743 831 193 14 7 chr9 20761259 20761405 -103314767 - B1_Mus1 SINE Alu -1 147 1 8 743 1008 160 6 11 chr9 20761963 20761993 -103314179 - B2_Mm1t SINE B2 -11 182 154 8 743 224 100 25 0 chr9 20761993 20762033 -103314139 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 8 743 1111 79 0 0 chr9 20762033 20762185 -103313987 - B2_Mm2 SINE B2 -43 152 1 8 743 433 310 68 14 chr9 20762316 20762463 -103313709 + RSINE1 SINE B4 9 163 -2 8 743 595 279 12 30 chr9 20762475 20762641 -103313531 + RSINE1 SINE B4 3 165 0 8 743 510 265 46 31 chr9 20762917 20763107 -103313065 - ID_B1 SINE B4 -96 196 1 8 743 943 47 139 0 chr9 20763335 20763464 -103312708 + B1_Mus2 SINE Alu 1 147 0 8 743 351 239 0 0 chr9 20763464 20763552 -103312620 + A-rich Low_complexity Low_complexity 1 88 0 8 743 602 266 83 26 chr9 20763604 20763797 -103312375 + ID_B1 SINE B4 2 205 -19 8 743 223 300 0 0 chr9 20763869 20763919 -103312253 + ID4_ SINE ID 5 54 -29 8 743 461 287 116 0 chr9 20764505 20764686 -103311486 + ID_B1 SINE B4 1 202 -22 8 743 238 247 173 0 chr9 20764720 20764801 -103311371 + B4A SINE B4 78 172 -120 8 743 304 197 14 57 chr9 20764746 20764816 -103311356 + PB1D10 SINE Alu 29 95 -22 8 743 1045 176 114 0 chr9 20765043 20765236 -103310936 - B3 SINE B2 -1 215 1 8 743 407 236 133 8 chr9 20765297 20765425 -103310747 - RSINE1 SINE B4 -9 156 13 8 743 365 240 0 0 chr9 20765424 20765499 -103310673 - ID SINE ID -136 88 14 8 743 245 279 0 14 chr9 20765499 20765568 -103310604 - ID_B1 SINE B4 -79 145 78 8 743 25 0 0 0 chr9 20765614 20765639 -103310533 + AT_rich Low_complexity Low_complexity 1 25 0 8 743 714 144 59 22 chr9 20765648 20765783 -103310389 + B1_Mur2 SINE Alu 9 148 -1 8 743 326 300 10 10 chr9 20765824 20765925 -103310247 - RSINE1 SINE B4 -40 125 25 8 743 239 222 0 0 chr9 20766309 20766354 -103309818 + B1F SINE Alu 93 137 -12 8 743 1196 82 0 0 chr9 20766410 20766557 -103309615 + B1_Mus2 SINE Alu 1 147 0 8 743 1117 68 0 0 chr9 20766638 20766771 -103309401 + B1_Mm SINE Alu 5 137 -10 8 743 293 0 0 26 chr9 20766771 20766809 -103309363 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 8 743 583 280 86 0 chr9 20766826 20767001 -103309171 - B3 SINE B2 -4 212 23 8 743 278 344 56 0 chr9 20767161 20767251 -103308921 - RSINE1 SINE B4 -2 163 69 8 743 210 37 0 0 chr9 20767340 20767367 -103308805 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 743 437 204 148 0 chr9 20767367 20767475 -103308697 - B1_Mus1 SINE Alu -11 137 14 8 743 766 255 6 0 chr9 20767472 20767633 -103308539 - B3 SINE B2 -52 164 3 8 743 709 250 9 88 chr9 20767730 20767945 -103308227 - ID_B1 SINE B4 -13 211 14 8 743 459 0 0 0 chr9 20768185 20768236 -103307936 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 743 261 250 0 15 chr9 20768408 20768473 -103307699 - RMER30 DNA MER1_type -17 185 122 8 743 641 238 25 80 chr9 20768467 20768668 -103307504 + B3A SINE B2 9 198 0 8 743 186 43 0 0 chr9 20769034 20769057 -103307115 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8 743 1152 42 0 53 chr9 20769057 20769209 -103306963 - B1_Mus2 SINE Alu -3 144 1 8 743 301 330 86 16 chr9 20769227 20769401 -103306771 - B4A SINE B4 -48 176 2 8 743 712 234 51 66 chr9 20769452 20769649 -103306523 + ID_B1 SINE B4 16 209 -15 8 743 489 233 20 38 chr9 20769708 20769873 -103306299 + B3A SINE B2 1 162 -33 8 743 225 0 0 0 chr9 20769873 20769898 -103306274 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 743 369 0 0 0 chr9 20769898 20769938 -103306234 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 743 471 235 50 96 chr9 20769938 20769969 -103306203 + B2_Mm2 SINE B2 163 188 -7 8 743 345 24 0 0 chr9 20770341 20770383 -103305789 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 743 653 237 8 83 chr9 20770885 20771083 -103305089 + ID_B1 SINE B4 80 262 -30 8 743 430 265 10 19 chr9 20771506 20771610 -103304562 + B1_Mur1 SINE Alu 30 132 -17 8 743 570 192 0 19 chr9 20773288 20773394 -103302778 - PB1D9 SINE Alu 0 120 17 8 743 632 257 45 50 chr9 20773449 20773650 -103302522 + ID_B1 SINE B4 4 203 -21 8 743 183 42 0 0 chr9 20773729 20773753 -103302419 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 743 498 136 34 0 chr9 20773757 20773845 -103302327 + Lx9 LINE L1 7391 7481 -163 8 743 23 54 0 0 chr9 20773935 20773972 -103302200 + AT_rich Low_complexity Low_complexity 1 37 0 8 743 567 120 0 53 chr9 20773977 20774091 -103302081 - L1Md_F2 LINE L1 -1 6581 6474 8 743 32 26 0 0 chr9 20774095 20774134 -103302038 + AT_rich Low_complexity Low_complexity 1 39 0 8 743 1469 69 16 0 chr9 20774147 20774335 -103301837 + B2_Mm2 SINE B2 5 195 0 8 743 941 148 7 20 chr9 20774350 20774502 -103301670 + B1_Mur4 SINE Alu 1 150 0 8 743 328 267 108 0 chr9 20774512 20774605 -103301567 + PB1D7 SINE Alu 26 125 -2 8 743 550 211 70 33 chr9 20775181 20775338 -103300834 + RSINE1 SINE B4 2 165 0 8 743 333 281 17 0 chr9 20775427 20775522 -103300650 + B4 SINE B4 1 97 -127 8 743 297 297 54 11 chr9 20775597 20775689 -103300483 + B4A SINE B4 1 96 -196 8 743 775 126 103 7 chr9 20775689 20775825 -103300347 + B1_Mur4 SINE Alu 1 149 -1 8 743 272 252 30 129 chr9 20775827 20775959 -103300213 + PB1D7 SINE Alu 1 119 -1 8 743 246 236 18 0 chr9 20776013 20776068 -103300104 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 743 186 133 0 0 chr9 20776188 20776218 -103299954 + (A)n Simple_repeat Simple_repeat 1 30 0 8 743 225 0 0 0 chr9 20776562 20776587 -103299585 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 8 743 691 94 24 44 chr9 20777767 20778185 -103297987 + (CA)n Simple_repeat Simple_repeat 1 409 0 8 743 434 291 7 34 chr9 20778468 20778614 -103297558 + ID_B1 SINE B4 79 220 -4 8 743 476 248 30 15 chr9 20778484 20778615 -103297557 + B1F SINE Alu 13 145 -4 8 743 377 262 83 96 chr9 20778634 20778790 -103297382 + RSINE1 SINE B4 12 165 0 8 743 194 116 23 0 chr9 20778819 20778862 -103297310 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 743 600 194 67 7 chr9 20778872 20779007 -103297165 + B1_Mur2 SINE Alu 7 149 0 8 743 628 277 0 26 chr9 20779546 20779698 -103296474 - B1_Mur1 SINE Alu 0 149 2 8 743 329 270 101 23 chr9 20781647 20781776 -103294396 + ID_B1 SINE B4 82 220 -4 8 743 396 271 128 34 chr9 20781782 20781931 -103294241 + ID_B1 SINE B4 8 170 -54 8 743 299 268 0 8 chr9 20782159 20782287 -103293885 + ORR1B1-int LTR MaLR 621 747 -762 8 743 810 39 0 0 chr9 20782187 20782291 -103293881 + B1_Mus2 SINE Alu 1 104 -43 9 743 602 232 34 63 chr9 20782291 20782419 -103293753 + B4 SINE B4 76 272 -20 9 743 23 0 0 0 chr9 20782458 20782481 -103293691 + AT_rich Low_complexity Low_complexity 1 23 0 9 743 507 206 96 37 chr9 20782481 20782668 -103293504 + B3A SINE B2 1 198 0 9 743 471 259 11 83 chr9 20782790 20782971 -103293201 + ID_B1 SINE B4 16 183 -41 9 743 367 206 0 0 chr9 20783016 20783089 -103293083 + ZP3AR Satellite Satellite 9 81 -131 9 743 324 268 12 0 chr9 20783050 20783132 -103293040 + ID4 SINE ID 1 83 0 9 743 318 252 75 0 chr9 20783577 20783684 -103292488 + ID_B1 SINE B4 101 215 -9 9 743 553 202 8 68 chr9 20783691 20783824 -103292348 + RSINE1 SINE B4 3 127 -38 9 743 1001 217 19 5 chr9 20783873 20784086 -103292086 + B3 SINE B2 1 216 0 9 743 1275 78 20 25 chr9 20784111 20784307 -103291865 + B2_Mm2 SINE B2 1 195 0 9 743 540 243 89 57 chr9 20784676 20784833 -103291339 + RSINE1 SINE B4 4 165 0 9 743 314 232 14 14 chr9 20784957 20785027 -103291145 - ID4 SINE ID -1 82 13 9 743 622 275 69 0 chr9 20785084 20785244 -103290928 + B3A SINE B2 4 174 -24 9 743 220 240 0 0 chr9 20785344 20785394 -103290778 + ID4 SINE ID 31 80 -3 9 743 2098 304 60 85 chr9 20785444 20786242 -103289930 + Lx9 LINE L1 6155 6925 -719 9 743 717 178 52 0 chr9 20786242 20786377 -103289795 - B1_Mus1 SINE Alu -6 142 1 9 743 2098 304 60 85 chr9 20786377 20786721 -103289451 + Lx9 LINE L1 6926 7269 -375 9 743 357 189 40 13 chr9 20786734 20786809 -103289363 + ZP3AR Satellite Satellite 32 108 -104 9 743 252 293 53 0 chr9 20786828 20786903 -103289269 + B1F2 SINE Alu 23 101 -48 9 743 318 26 0 0 chr9 20786914 20786953 -103289219 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 743 450 235 42 34 chr9 20786979 20787098 -103289074 + ID_B1 SINE B4 105 224 0 9 743 992 233 5 0 chr9 20787102 20787304 -103288868 + B3 SINE B2 1 203 -13 9 743 204 163 20 20 chr9 20788264 20788314 -103287858 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 9 743 292 155 17 0 chr9 20788336 20788394 -103287778 - B3 SINE B2 -157 59 1 9 743 534 182 10 0 chr9 20788397 20788496 -103287676 - PB1D10 SINE Alu 0 117 18 9 743 628 175 19 77 chr9 20788552 20788707 -103287465 - B1_Mur2 SINE Alu -2 147 2 9 743 620 133 156 0 chr9 20788754 20788882 -103287290 + B1_Mur3 SINE Alu 2 149 0 9 743 312 172 0 0 chr9 20788882 20788940 -103287232 + GA-rich Low_complexity Low_complexity 4 61 0 9 743 404 296 31 16 chr9 20788994 20789121 -103287051 + RSINE1 SINE B4 24 152 -13 9 743 399 41 0 0 chr9 20789143 20789192 -103286980 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 743 244 222 72 24 chr9 20789321 20789404 -103286768 + MLT1A LTR MaLR 76 162 -212 9 743 348 247 87 68 chr9 20789418 20789579 -103286593 + ZP3AR Satellite Satellite 6 169 -43 9 743 385 261 11 0 chr9 20789720 20789808 -103286364 + PB1D10 SINE Alu 23 111 -6 9 743 473 213 15 69 chr9 20789971 20790102 -103286070 + B3 SINE B2 93 216 0 9 743 329 150 0 16 chr9 20790487 20790545 -103285627 - B1_Mur2 SINE Alu -1 148 92 9 743 408 144 188 9 chr9 20790545 20790657 -103285515 - RMER15 LTR ERVL 0 575 444 9 743 933 137 411 0 chr9 20790659 20790900 -103285272 - RMER15 LTR ERVL -233 342 3 9 743 458 233 39 0 chr9 20790900 20790996 -103285176 - B1_Mur4 SINE Alu -50 100 1 9 743 978 272 104 20 chr9 20790998 20791343 -103284829 + MTEa LTR MaLR 6 379 0 9 743 414 57 0 0 chr9 20791459 20791512 -103284660 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 743 382 117 56 46 chr9 20791695 20791803 -103284369 + L1Md_F2 LINE L1 6474 6582 0 9 743 509 168 19 133 chr9 20792155 20792313 -103283859 + B1_Mur1 SINE Alu 5 144 -5 9 743 231 275 244 0 chr9 20792338 20792469 -103283703 - RSINE1 SINE B4 0 165 3 9 743 610 267 16 88 chr9 20793107 20793300 -103282872 - B4A SINE B4 -112 180 2 9 743 198 0 0 0 chr9 20793314 20793336 -103282836 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 9 743 621 193 0 0 chr9 20793336 20793445 -103282727 - B1_Mur2 SINE Alu -35 114 6 9 743 410 276 0 57 chr9 20793445 20793459 -103282713 - ID_B1 SINE B4 -32 192 77 9 743 640 287 28 23 chr9 20793463 20793677 -103282495 - ID_B1 SINE B4 -8 216 2 9 743 242 56 28 0 chr9 20793739 20793775 -103282397 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 9 743 313 340 0 28 chr9 20793782 20793927 -103282245 - RSINE1 SINE B4 -22 143 3 9 743 515 263 36 7 chr9 20793930 20794068 -103282104 - ID_B1 SINE B4 -2 222 81 9 743 508 253 163 10 chr9 20794352 20794544 -103281628 + B4A SINE B4 6 227 -65 9 743 428 274 66 84 chr9 20794544 20794711 -103281461 + RSINE1 SINE B4 2 165 0 9 743 396 0 0 0 chr9 20794781 20794825 -103281347 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 743 293 283 0 0 chr9 20794829 20794889 -103281283 + RSINE1 SINE B4 1 60 -105 9 743 933 133 0 0 chr9 20794980 20795123 -103281049 + B1_Mur4 SINE Alu 1 143 -7 9 743 359 251 67 12 chr9 20795674 20795818 -103280354 + B4A SINE B4 4 165 -127 9 743 997 76 28 7 chr9 20795882 20796027 -103280145 + B1_Mus1 SINE Alu 1 148 0 9 743 187 54 26 26 chr9 20796027 20796065 -103280107 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 9 743 794 37 54 24 chr9 20796136 20796304 -103279868 + (CA)n Simple_repeat Simple_repeat 1 173 0 9 743 348 91 22 43 chr9 20796322 20796414 -103279758 + (CA)n Simple_repeat Simple_repeat 1 90 0 9 743 783 163 22 0 chr9 20796545 20796680 -103279492 + B1_Mus1 SINE Alu 5 142 -6 9 743 585 268 54 153 chr9 20796734 20796818 -103279354 + B4 SINE B4 7 84 -208 9 743 826 200 97 5 chr9 20796818 20797004 -103279168 + B3 SINE B2 2 204 -12 9 743 585 268 54 153 chr9 20797004 20797232 -103278940 + B4 SINE B4 85 288 -4 9 743 427 221 42 10 chr9 20797334 20797430 -103278742 + RSINE1 SINE B4 29 127 -38 9 743 212 0 36 0 chr9 20797504 20797532 -103278640 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 743 612 296 25 63 chr9 20797591 20797876 -103278296 - B4A SINE B4 -18 274 1 9 743 344 246 60 52 chr9 20798282 20798398 -103277774 + PB1D10 SINE Alu 1 117 0 9 743 304 263 32 41 chr9 20798426 20798494 -103277678 + ID_B1 SINE B4 103 171 -53 9 743 620 35 0 0 chr9 20798494 20798579 -103277593 + L1Md_T LINE L1 6498 6582 0 9 743 304 263 32 41 chr9 20798579 20798633 -103277539 + ID_B1 SINE B4 172 224 0 9 743 250 309 29 0 chr9 20798665 20798733 -103277439 + RSINE1 SINE B4 92 161 -4 9 743 738 146 36 0 chr9 20798895 20799032 -103277140 + B1F2 SINE Alu 1 142 -7 9 743 219 36 0 0 chr9 20799294 20799322 -103276850 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 9 743 1065 51 7 0 chr9 20799322 20799459 -103276713 - B1_Mm SINE Alu -9 138 1 9 743 561 265 46 39 chr9 20799503 20799656 -103276516 - RSINE1 SINE B4 -4 161 8 9 743 413 246 83 15 chr9 20799666 20799798 -103276374 - B1F SINE Alu 0 149 9 9 743 295 274 80 100 chr9 20799669 20799819 -103276353 - B4 SINE B4 -70 222 76 9 743 472 210 42 1 chr9 20799849 20799961 -103276211 + PB1D10 SINE Alu 6 122 -27 9 743 1027 71 7 0 chr9 20800056 20800197 -103275975 + B1_Mus1 SINE Alu 7 148 0 9 743 676 169 81 0 chr9 20800245 20800381 -103275791 + B1_Mus1 SINE Alu 1 147 -1 9 743 1311 93 5 20 chr9 20800384 20800582 -103275590 + B2_Mm2 SINE B2 1 195 0 9 743 848 150 247 6 chr9 20800604 20800778 -103275394 + B3 SINE B2 1 216 0 9 743 1085 55 7 7 chr9 20800824 20800971 -103275201 - B1_Mus1 SINE Alu 0 148 2 9 743 994 227 19 0 chr9 20800985 20801192 -103274980 - B3 SINE B2 -5 211 1 9 743 515 263 5 106 chr9 20801221 20801438 -103274734 + B3A SINE B2 1 195 -3 9 743 588 175 0 0 chr9 20801439 20801536 -103274636 + B1_Mur2 SINE Alu 2 98 -51 9 743 530 278 36 25 chr9 20801689 20801885 -103274287 + Lx6 LINE L1 5505 5702 -598 9 743 319 263 57 48 chr9 20801952 20802076 -103274096 - RSINE1 SINE B4 -30 135 11 9 743 793 201 125 16 chr9 20802091 20802283 -103273889 - ID_B1 SINE B4 0 224 12 9 743 343 232 33 82 chr9 20802369 20802491 -103273681 + Lx6 LINE L1 5638 5780 -532 9 743 432 240 72 189 chr9 20802570 20802612 -103273560 + B3 SINE B2 1 42 -174 9 743 1010 67 0 0 chr9 20802612 20802746 -103273426 + B1_Mus1 SINE Alu 2 135 -13 9 743 966 100 0 0 chr9 20802747 20802887 -103273285 + (GA)n Simple_repeat Simple_repeat 1 140 0 9 743 551 206 26 68 chr9 20802887 20803035 -103273137 + B2_Mm2 SINE B2 21 159 -57 9 743 1250 91 21 11 chr9 20803035 20803223 -103272949 - B2_Mm2 SINE B2 -5 190 1 9 743 483 255 31 75 chr9 20803223 20803247 -103272925 + B2_Mm1t SINE B2 152 174 -19 9 743 230 150 0 24 chr9 20803293 20803334 -103272838 + B1F1 SINE Alu 73 112 -37 9 743 406 256 28 67 chr9 20803314 20803489 -103272683 + B4A SINE B4 79 232 -60 9 743 514 124 292 0 chr9 20803496 20803609 -103272563 + B1_Mur4 SINE Alu 5 150 0 9 743 615 157 0 38 chr9 20803905 20804011 -103272161 + PB1D9 SINE Alu 1 102 -18 9 743 1131 75 0 0 chr9 20804118 20804265 -103271907 + B1_Mm SINE Alu 1 147 0 9 743 183 80 0 0 chr9 20804282 20804307 -103271865 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 743 214 205 0 0 chr9 20804361 20804400 -103271772 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 9 743 643 325 0 0 chr9 20804435 20804589 -103271583 + RSINE1 SINE B4 3 156 -9 9 743 275 232 0 0 chr9 20804637 20804693 -103271479 - ID4_ SINE ID 0 83 28 9 743 621 282 48 0 chr9 20804754 20804960 -103271212 + ID_B1 SINE B4 1 216 -8 9 743 195 129 0 0 chr9 20804986 20805017 -103271155 + (CAA)n Simple_repeat Simple_repeat 3 33 0 9 743 592 160 7 132 chr9 20805051 20805202 -103270970 - B1_Mur1 SINE Alu -16 133 2 1 743 277 252 12 173 chr9 20805202 20805258 -103270914 - MT2B LTR ERVL -456 145 117 1 743 231 244 55 55 chr9 20805800 20805891 -103270281 + B2_Mm2 SINE B2 1 91 -104 1 743 287 279 16 168 chr9 20805876 20805940 -103270232 + B1F1 SINE Alu 7 62 -87 1 743 1218 34 0 0 chr9 20805940 20806087 -103270085 + B1_Mus2 SINE Alu 1 147 0 1 743 287 279 16 168 chr9 20806087 20806147 -103270025 + B1F1 SINE Alu 63 112 -37 1 743 270 253 96 0 chr9 20806092 20806175 -103269997 + ID_B1 SINE B4 134 224 0 1 743 288 311 18 36 chr9 20806220 20806330 -103269842 + PB1D10 SINE Alu 7 114 -3 1 743 426 246 91 0 chr9 20806341 20806451 -103269721 + RSINE1 SINE B4 11 130 -35 1 743 852 166 102 6 chr9 20806485 20806661 -103269511 + B2_Mm2 SINE B2 1 193 -2 1 743 359 184 224 17 chr9 20806742 20806858 -103269314 - B1_Mur2 SINE Alu -8 141 2 1 743 473 227 134 0 chr9 20806861 20806980 -103269192 + B1_Mur1 SINE Alu 15 149 0 1 743 1159 54 7 0 chr9 20808036 20808183 -103267989 + B1_Mus1 SINE Alu 1 148 0 1 743 219 36 0 0 chr9 20808183 20808211 -103267961 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1 743 563 244 76 28 chr9 20808280 20808491 -103267681 + ID_B1 SINE B4 2 222 -2 1 743 1595 31 0 0 chr9 20808495 20808686 -103267486 + B2_Mm1a SINE B2 2 192 -1 1 743 1122 65 81 23 chr9 20808712 20808885 -103267287 + B2_Mm2 SINE B2 5 187 -8 1 743 423 326 47 0 chr9 20808992 20809121 -103267051 + B3 SINE B2 70 204 -12 1 743 208 0 62 0 chr9 20809133 20809165 -103267007 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 743 688 176 38 15 chr9 20809168 20809301 -103266871 - B1_Mur2 SINE Alu -13 136 1 1 743 181 196 18 18 chr9 20809433 20809490 -103266682 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1 743 257 204 0 0 chr9 20809496 20809545 -103266627 - RSINE1 SINE B4 -113 52 4 1 743 401 283 128 44 chr9 20809682 20809933 -103266239 + B4A SINE B4 2 273 -19 1 743 545 243 87 51 chr9 20809958 20810153 -103266019 - B3 SINE B2 -11 205 4 1 743 471 130 0 0 chr9 20810199 20810276 -103265896 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 743 462 264 9 0 chr9 20810292 20810398 -103265774 - PB1D10 SINE Alu -1 116 10 1 743 458 73 0 47 chr9 20811004 20811090 -103265082 - L1Md_F2 LINE L1 0 6582 6501 1 743 242 352 45 18 chr9 20811570 20811680 -103264492 - PB1D10 SINE Alu -1 116 4 1 743 833 161 7 0 chr9 20813550 20813693 -103262479 - B1_Mur4 SINE Alu -6 144 1 1 743 1204 105 41 0 chr9 20813734 20813906 -103262266 + B2_Mm2 SINE B2 4 182 -13 1 743 1380 68 11 5 chr9 20813907 20814098 -103262074 + B2_Mm2 SINE B2 1 192 -3 1 743 499 272 126 17 chr9 20814098 20814288 -103261884 + B3 SINE B2 4 191 -4 1 743 657 159 325 0 chr9 20814499 20814656 -103261516 + B3 SINE B2 2 209 -7 1 743 1021 128 0 0 chr9 20814664 20814812 -103261360 + B1_Mus1 SINE Alu 1 148 0 1 743 329 40 40 0 chr9 20814812 20814862 -103261310 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 1 743 296 244 60 10 chr9 20815090 20815187 -103260985 + PB1D10 SINE Alu 12 114 -35 1 743 535 171 26 18 chr9 20815382 20815495 -103260677 + B1_Mus2 SINE Alu 14 127 -20 1 743 1544 31 0 30 chr9 20815603 20815802 -103260370 - B2_Mm1t SINE B2 0 193 1 1 743 1125 76 0 0 chr9 20815849 20815994 -103260178 + B1_Mus1 SINE Alu 1 145 -3 1 743 240 59 0 0 chr9 20815997 20816031 -103260141 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 743 423 242 177 0 chr9 20816208 20816332 -103259840 + ID_B1 SINE B4 78 223 -1 1 743 310 243 83 9 chr9 20816392 20816500 -103259672 + PB1D10 SINE Alu 1 116 -1 1 743 653 152 64 128 chr9 20816952 20817140 -103259032 - B2_Mm2 SINE B2 -19 176 1 1 743 192 77 0 0 chr9 20817140 20817166 -103259006 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1 743 656 130 203 0 chr9 20817166 20817289 -103258883 - B1_Mus1 SINE Alu 0 148 1 1 743 21 0 0 0 chr9 20817334 20817355 -103258817 + AT_rich Low_complexity Low_complexity 1 21 0 1 743 211 220 60 0 chr9 20817417 20817467 -103258705 - ID2 SINE ID -26 57 5 1 743 336 196 216 0 chr9 20817507 20817604 -103258568 - B3A SINE B2 -75 123 6 1 743 1347 53 31 31 chr9 20817636 20817831 -103258341 - B2_Mm2 SINE B2 0 195 1 1 743 489 138 74 11 chr9 20817919 20818014 -103258158 - ID_B1 SINE B4 0 224 124 1 743 1134 20 0 45 chr9 20818085 20818239 -103257933 - B1_Mm SINE Alu 0 147 1 1 743 450 36 0 0 chr9 20818312 20818368 -103257804 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 743 445 221 0 0 chr9 20818383 20818469 -103257703 - B3A SINE B2 -110 88 3 1 743 701 159 29 29 chr9 20818487 20818623 -103257549 - B3 SINE B2 -80 136 1 1 743 396 216 57 0 chr9 20819395 20819483 -103256689 + ID_B1 SINE B4 129 221 -3 1 743 204 289 11 32 chr9 20819487 20819580 -103256592 + GA-rich Low_complexity Low_complexity 4 94 0 1 743 467 179 9 0 chr9 20820761 20820867 -103255305 + CT-rich Low_complexity Low_complexity 2 108 0 1 743 248 236 77 22 chr9 20820874 20820965 -103255207 - PB1D10 SINE Alu -1 116 21 1 743 664 126 36 0 chr9 20821612 20821723 -103254449 - B1_Mur3 SINE Alu 0 149 35 1 743 336 299 20 20 chr9 20821796 20821946 -103254226 - RSINE1 SINE B4 -14 151 2 1 743 343 231 63 0 chr9 20821946 20822072 -103254100 - PB1D10 SINE Alu -6 143 1 1 743 475 205 179 0 chr9 20822176 20822288 -103253884 - B1F2 SINE Alu -16 133 2 1 743 279 25 0 10 chr9 20822389 20822430 -103253742 + (TTC)n Simple_repeat Simple_repeat 1 40 0 1 743 1044 151 0 0 chr9 20822430 20822609 -103253563 + CT-rich Low_complexity Low_complexity 2 180 0 1 743 272 104 0 40 chr9 20822609 20822648 -103253524 + (TTC)n Simple_repeat Simple_repeat 1 39 0 1 743 778 166 27 33 chr9 20822772 20822922 -103253250 + B1_Mur2 SINE Alu 1 149 0 1 743 488 216 154 19 chr9 20823030 20823186 -103252986 - ID_B1 SINE B4 -13 211 35 1 743 1161 61 0 0 chr9 20823863 20824010 -103252162 + B1_Mus2 SINE Alu 1 147 0 1 743 979 141 198 0 chr9 20824028 20824205 -103251967 - B3 SINE B2 -4 212 1 1 743 646 249 87 10 chr9 20824215 20824422 -103251750 - ID_B1 SINE B4 -1 223 1 1 743 274 321 0 52 chr9 20824445 20824560 -103251612 + ID_B1 SINE B4 100 208 -16 1 743 627 14 0 0 chr9 20824562 20824634 -103251538 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 743 773 171 31 0 chr9 20824939 20825068 -103251104 + B1_Mur1 SINE Alu 2 134 -15 1 743 611 208 49 55 chr9 20825088 20825251 -103250921 - RSINE1 SINE B4 -1 164 3 1 743 227 104 21 0 chr9 20825269 20825317 -103250855 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 1 743 700 204 66 0 chr9 20825318 20825455 -103250717 - B1_Mus1 SINE Alu -1 147 2 1 743 541 264 94 39 chr9 20825465 20825646 -103250526 - B3A SINE B2 -2 196 6 1 743 231 81 27 0 chr9 20825703 20825740 -103250432 - MT2B LTR ERVL -311 290 253 1 743 196 262 66 0 chr9 20825803 20825864 -103250308 - MER5B DNA MER1_type -42 136 72 1 743 285 288 0 36 chr9 20825866 20825949 -103250223 - BC1_Mm scRNA scRNA -68 84 5 1 743 405 214 34 0 chr9 20826194 20826283 -103249889 - ZP3AR Satellite Satellite -108 104 13 1 743 315 163 0 0 chr9 20826640 20826689 -103249483 + B1F SINE Alu 67 115 -34 1 743 657 229 8 0 chr9 20827153 20827284 -103248888 - B1_Mur4 SINE Alu -18 132 1 1 743 325 203 453 0 chr9 20827308 20827456 -103248716 - B3 SINE B2 0 216 2 1 743 392 284 18 9 chr9 20827456 20827566 -103248606 - RSINE1 SINE B4 -44 121 11 1 743 1264 72 56 0 chr9 20827651 20827831 -103248341 - B2_Mm2 SINE B2 -5 190 1 1 743 216 86 0 0 chr9 20827836 20827871 -103248301 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 743 1292 71 5 37 chr9 20827882 20828072 -103248100 - B2_Mm1a SINE B2 -9 184 1 1 743 1052 89 0 20 chr9 20828076 20828225 -103247947 - B1_Mus2 SINE Alu 0 147 2 1 743 650 188 27 68 chr9 20828229 20828377 -103247795 - B1_Mur1 SINE Alu -1 148 7 1 743 341 251 117 28 chr9 20828406 20828513 -103247659 - B1_Mur2 SINE Alu -5 115 11 1 743 255 287 34 25 chr9 20828549 20828667 -103247505 + PB1D7 SINE Alu 2 120 0 1 743 378 279 12 0 chr9 20828746 20828832 -103247340 - ZP3AR Satellite Satellite -84 128 42 1 743 205 250 0 0 chr9 20829064 20829116 -103247056 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 1 743 1155 48 0 0 chr9 20829117 20829263 -103246909 - B1_Mm SINE Alu -1 146 1 1 743 345 236 32 156 chr9 20829281 20829389 -103246783 - RSINE1 SINE B4 0 165 79 1 743 1028 98 0 0 chr9 20829389 20829532 -103246640 - B1_Mur4 SINE Alu -6 144 2 1 743 345 236 32 156 chr9 20829532 20829609 -103246563 - RSINE1 SINE B4 -87 78 3 1 743 266 276 0 13 chr9 20829627 20829704 -103246468 - ID4 SINE ID -1 82 7 1 743 561 222 95 27 chr9 20830404 20830552 -103245620 + RSINE1 SINE B4 2 159 -6 1 743 524 133 32 41 chr9 20831244 20831354 -103244818 + PB1D9 SINE Alu 11 142 -7 1 743 528 241 34 1 chr9 20833401 20833536 -103242636 - B1_Mur3 SINE Alu -2 147 9 1 743 459 174 76 0 chr9 20833562 20833654 -103242518 - PB1D9 SINE Alu -13 107 9 1 743 273 200 77 66 chr9 20833578 20833669 -103242503 - ID_B1 SINE B4 -55 169 78 1 743 312 238 185 28 chr9 20838310 20838418 -103237754 + B1_Mur2 SINE Alu 7 131 -18 1 743 1482 48 26 11 chr9 20838460 20838489 -103237683 - B2_Mm1t SINE B2 0 193 161 1 743 207 0 0 0 chr9 20838489 20838512 -103237660 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 743 1482 48 26 11 chr9 20838512 20838671 -103237501 - B2_Mm1t SINE B2 -33 160 2 1 743 725 250 45 6 chr9 20838732 20838889 -103237283 - RSINE1 SINE B4 0 165 3 1 744 838 130 14 7 chr9 20840469 20840608 -103235564 + B1_Mur3 SINE Alu 9 148 -1 1 744 233 310 14 14 chr9 20841624 20841696 -103234476 + ID4_ SINE ID 2 73 -10 1 744 374 253 21 10 chr9 20841699 20841795 -103234377 + B1_Mur1 SINE Alu 26 122 -27 1 744 395 38 0 19 chr9 20842657 20842711 -103233461 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 744 360 0 0 0 chr9 20843545 20843585 -103232587 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 744 387 141 0 0 chr9 20843683 20843747 -103232425 + (TCC)n Simple_repeat Simple_repeat 3 66 0 1 744 593 155 10 0 chr9 20843773 20843876 -103232296 + B1_Mus2 SINE Alu 37 140 -7 1 744 2431 96 9 0 chr9 20844046 20844369 -103231803 - ORR1A3 LTR MaLR 0 326 1 1 744 255 342 43 26 chr9 20844547 20844664 -103231508 + ID_B1 SINE B4 103 221 -3 1 744 256 210 145 0 chr9 20844682 20844744 -103231428 + B4 SINE B4 15 85 -207 1 744 283 325 63 44 chr9 20844757 20844915 -103231257 + RSINE1 SINE B4 3 163 -2 1 744 1291 126 108 0 chr9 20845119 20845342 -103230830 + ORR1A3 LTR MaLR 23 269 -57 1 744 333 93 0 0 chr9 20845443 20845497 -103230675 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 744 318 26 0 0 chr9 20846139 20846178 -103229994 + (GGTTG)n Simple_repeat Simple_repeat 1 39 0 1 744 894 154 0 0 chr9 20846178 20846308 -103229864 - B1_Mus2 SINE Alu -13 134 5 1 744 1973 262 90 15 chr9 20846309 20847021 -103229151 + RMER15-int LTR ERVL 1534 2298 -2701 1 744 229 135 39 0 chr9 20847036 20847088 -103229084 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 744 872 217 253 13 chr9 20847108 20847416 -103228756 - MT2A LTR ERVL -43 490 109 1 744 1256 274 93 13 chr9 20847431 20847757 -103228415 + RMER1C Other Other 140 303 -1039 1 744 204 40 0 0 chr9 20847757 20847782 -103228390 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 744 2660 259 39 65 chr9 20847782 20848453 -103227719 + RMER1C Other Other 568 1235 -107 1 744 1365 67 33 0 chr9 20848453 20848633 -103227539 + B2_Mm1a SINE B2 1 186 -7 1 744 2660 259 39 65 chr9 20848633 20848747 -103227425 + RMER1C Other Other 1236 1333 -9 1 744 1310 109 11 0 chr9 20848749 20848933 -103227239 + B2_Mm1t SINE B2 2 187 -6 1 744 709 141 0 40 chr9 20848947 20849073 -103227099 - MT2A LTR ERVL -412 121 1 1 744 11787 157 108 96 chr9 20849074 20849257 -103226915 - MERVL_2A-int LTR ERVL -1 5760 5590 1 744 1050 124 202 0 chr9 20849257 20849435 -103226737 - B3 SINE B2 -1 215 2 1 744 11787 157 108 96 chr9 20849435 20849490 -103226682 - MERVL_2A-int LTR ERVL -172 5589 5548 1 744 351 0 0 0 chr9 20849490 20849529 -103226643 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 744 11787 157 108 96 chr9 20849529 20849540 -103226632 - MERVL_2A-int LTR ERVL -214 5547 5547 1 744 1224 27 7 27 chr9 20849540 20849690 -103226482 - B1_Mus1 SINE Alu 0 148 2 1 744 11787 157 108 96 chr9 20849690 20850452 -103225720 - MERVL_2A-int LTR ERVL -214 5547 4723 1 744 519 223 7 97 chr9 20850452 20850464 -103225708 - B1_Mus1 SINE Alu 0 148 137 1 744 237 65 0 0 chr9 20850464 20850495 -103225677 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 744 519 223 7 97 chr9 20850495 20850636 -103225536 - B1_Mus1 SINE Alu -12 136 9 1 744 11787 157 108 96 chr9 20850636 20852188 -103223984 - MERVL_2A-int LTR ERVL -1039 4722 3006 1 744 1167 197 5 0 chr9 20852214 20852427 -103223745 - MERVL_2A-int LTR ERVL -4077 1684 1471 1 744 446 189 22 0 chr9 20852477 20852567 -103223605 + RMER15-int LTR ERVL 2298 2389 -2610 1 744 231 310 7 100 chr9 20852724 20852864 -103223308 - RMER21A LTR ERV1 -46 901 775 1 744 269 299 109 27 chr9 20852906 20853016 -103223156 - RMER21A LTR ERV1 -54 893 775 1 744 242 246 0 47 chr9 20853028 20853092 -103223080 - RMER21A LTR ERV1 -112 835 775 1 744 227 259 0 49 chr9 20853183 20853244 -103222928 - RMER21A LTR ERV1 -115 832 775 1 744 248 232 0 51 chr9 20853259 20853318 -103222854 - RMER21B LTR ERV1 -115 832 777 1 744 1091 210 99 14 chr9 20853355 20853649 -103222523 - RMER21B LTR ERV1 -275 567 249 1 744 1853 145 118 11 chr9 20853666 20854015 -103222157 + ORR1B1 LTR MaLR 1 386 -8 1 744 300 289 103 0 chr9 20854056 20854153 -103222019 - RMER4B LTR ERVK -134 451 345 1 744 502 194 148 0 chr9 20854153 20854261 -103221911 - RodERV21-int LTR ERV1 -165 4826 4703 1 744 702 196 14 0 chr9 20854271 20854409 -103221763 - B1_Mus1 SINE Alu -1 147 8 1 744 292 226 12 23 chr9 20854465 20854551 -103221621 - RLTR19-int LTR ERVK -5254 883 799 1 744 2099 113 3 9 chr9 20854677 20854998 -103221174 - ORR1A2 LTR MaLR -8 319 1 1 744 917 197 115 50 chr9 20855050 20855328 -103220844 - RodERV21-int LTR ERV1 -2274 2717 2422 1 744 1032 252 0 35 chr9 20855353 20855560 -103220612 - RodERV21-int LTR ERV1 -3471 1520 1318 1 744 897 85 147 0 chr9 20855560 20855689 -103220483 + B1_Mus1 SINE Alu 1 148 0 1 744 751 21 21 0 chr9 20855691 20855788 -103220384 + (GAAA)n Simple_repeat Simple_repeat 3 101 0 1 744 1032 252 0 35 chr9 20855788 20855803 -103220369 - RodERV21-int LTR ERV1 -3674 1317 1303 1 744 1371 198 152 41 chr9 20855811 20856298 -103219874 + RLTR20B2 LTR ERVK 1 541 -22 1 744 4454 239 60 48 chr9 20856303 20857575 -103218597 - RodERV21-int LTR ERV1 -3700 1291 4 1 744 2034 221 147 14 chr9 20857723 20858358 -103217814 + RMER15-int LTR ERVL 4259 4978 -21 1 744 898 186 274 0 chr9 20858361 20858613 -103217559 + RMER15 LTR ERVL 9 329 -246 1 744 600 271 43 32 chr9 20858617 20858803 -103217369 + B4A SINE B4 43 230 -62 1 744 391 172 0 0 chr9 20858803 20858867 -103217305 + B3A SINE B2 1 64 -134 1 744 249 108 0 0 chr9 20858918 20858955 -103217217 + (CATG)n Simple_repeat Simple_repeat 2 38 0 1 744 2537 132 7 32 chr9 20858961 20859430 -103216742 + RLTR13A3 LTR ERVK 1 560 -418 1 744 3898 22 0 0 chr9 20859430 20859887 -103216285 - L1Md_T LINE L1 -151 6431 5975 1 744 1057 58 0 0 chr9 20859887 20860026 -103216146 + L1Md_A LINE L1 6444 6582 0 1 744 3483 31 7 0 chr9 20860106 20860555 -103215617 + RLTR13A3 LTR ERVK 527 978 0 1 744 1143 101 0 0 chr9 20860579 20860727 -103215445 - B1_Mus1 SINE Alu 0 148 1 1 744 443 154 54 11 chr9 20860765 20860857 -103215315 - B1_Mus2 SINE Alu -1 146 51 1 744 233 229 81 35 chr9 20860790 20860876 -103215296 - MT2B LTR ERVL -323 278 189 1 744 24 0 0 0 chr9 20860876 20860900 -103215272 + AT_rich Low_complexity Low_complexity 1 24 0 1 744 1239 41 7 0 chr9 20860900 20861046 -103215126 + B1_Mus2 SINE Alu 1 147 0 1 744 425 248 35 0 chr9 20861076 20861189 -103214983 + PB1D10 SINE Alu 1 117 0 1 744 192 77 0 0 chr9 20861214 20861240 -103214932 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1 744 288 254 15 0 chr9 20861241 20861308 -103214864 + B1_Mus2 SINE Alu 3 70 -77 1 744 599 340 88 37 chr9 20861307 20861658 -103214514 - MTE-int LTR MaLR -479 1101 733 1 744 2082 180 39 0 chr9 20861814 20862202 -103213970 - MTC LTR MaLR -14 407 5 1 744 438 231 160 8 chr9 20862211 20862342 -103213830 - B3A SINE B2 -47 151 1 1 744 744 204 0 58 chr9 20862472 20862628 -103213544 - B1_Mur3 SINE Alu -2 147 1 1 744 1935 200 59 14 chr9 20862674 20863100 -103213072 + ORR1B1-int LTR MaLR 2 446 -1063 1 744 1273 27 7 0 chr9 20863114 20863260 -103212912 + B1_Mus2 SINE Alu 1 147 0 1 744 200 182 15 29 chr9 20863274 20863342 -103212830 + A-rich Low_complexity Low_complexity 2 68 0 1 744 1177 162 72 4 chr9 20863359 20863594 -103212578 + ORR1B1-int LTR MaLR 1080 1330 -179 1 744 309 82 0 0 chr9 20863596 20863645 -103212527 + (TTG)n Simple_repeat Simple_repeat 1 49 0 1 744 922 53 23 15 chr9 20863645 20863772 -103212400 - B1_Mur4 SINE Alu -13 137 8 1 744 247 116 70 0 chr9 20863774 20863817 -103212355 + ORR1B1-int LTR MaLR 1222 1267 -103 1 744 1170 97 11 17 chr9 20863795 20863973 -103212199 - B2_Mm2 SINE B2 -14 181 5 1 744 254 206 16 0 chr9 20863976 20864039 -103212133 + CT-rich Low_complexity Low_complexity 1 64 0 1 744 294 358 11 0 chr9 20864088 20864183 -103211989 - RSINE1 SINE B4 -24 141 46 1 744 204 174 0 61 chr9 20864292 20864319 -103211853 + T-rich Low_complexity Low_complexity 21 46 0 1 744 1163 69 7 0 chr9 20864319 20864463 -103211709 - B1_Mm SINE Alu -1 146 2 1 744 1157 127 17 6 chr9 20864463 20864637 -103211535 - B2_Mm1t SINE B2 -17 176 1 1 744 204 174 0 61 chr9 20864637 20864657 -103211515 + T-rich Low_complexity Low_complexity 2 20 0 1 744 1265 115 60 0 chr9 20864657 20864840 -103211332 - B2_Mm2 SINE B2 0 195 2 1 744 497 198 79 0 chr9 20864857 20864958 -103211214 - PB1 SINE Alu -14 113 5 1 744 450 213 21 0 chr9 20864998 20865092 -103211080 - B1_Mur1 SINE Alu -32 117 22 1 744 501 17 0 0 chr9 20865128 20865186 -103210986 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 744 403 250 0 40 chr9 20865463 20865563 -103210609 + RSINE1 SINE B4 68 163 -2 1 744 1195 62 7 0 chr9 20865592 20865738 -103210434 + B1_Mus2 SINE Alu 1 147 0 1 744 491 283 16 1 chr9 20865748 20865882 -103210290 + ID_B1 SINE B4 69 206 -86 1 744 222 299 39 13 chr9 20866041 20866119 -103210053 - RSINE1 SINE B4 -83 82 3 1 744 596 292 18 6 chr9 20866148 20866317 -103209855 - B3 SINE B2 -2 214 44 1 744 447 341 0 23 chr9 20866561 20866690 -103209482 + RSINE1 SINE B4 16 141 -24 1 744 576 120 0 0 chr9 20866690 20866790 -103209382 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 744 23 54 0 0 chr9 20868054 20868091 -103208081 + AT_rich Low_complexity Low_complexity 1 37 0 1 744 400 198 147 73 chr9 20868142 20868251 -103207921 - PB1D10 SINE Alu 0 117 1 1 744 484 249 22 56 chr9 20868280 20868444 -103207728 - ID_B1 SINE B4 -127 165 8 1 744 391 227 62 26 chr9 20868548 20868661 -103207511 + PB1D10 SINE Alu 1 117 0 1 744 26 0 0 0 chr9 20868661 20868687 -103207485 + AT_rich Low_complexity Low_complexity 1 26 0 1 744 362 213 51 85 chr9 20868693 20868764 -103207408 + PB1D10 SINE Alu 1 64 -53 1 744 1231 64 122 0 chr9 20868764 20868936 -103207236 + B2_Mm1t SINE B2 1 193 0 1 744 362 213 51 85 chr9 20868936 20868982 -103207190 + PB1D10 SINE Alu 65 113 -4 1 744 247 212 0 205 chr9 20869018 20869101 -103207071 + RSINE1 SINE B4 15 80 -85 1 744 34 0 0 0 chr9 20869126 20869160 -103207012 + AT_rich Low_complexity Low_complexity 1 34 0 1 744 1005 114 7 0 chr9 20869161 20869301 -103206871 + B1_Mus1 SINE Alu 2 142 -6 1 744 288 0 0 0 chr9 20869304 20869336 -103206836 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1 744 634 241 0 64 chr9 20869404 20869577 -103206595 - RSINE1 SINE B4 0 165 4 1 744 227 292 75 43 chr9 20869585 20869678 -103206494 - PB1D10 SINE Alu -1 116 21 1 744 275 261 32 64 chr9 20869685 20869711 -103206461 - PB1D7 SINE Alu -9 111 88 1 744 486 0 0 0 chr9 20869711 20869765 -103206407 + (TTA)n Simple_repeat Simple_repeat 2 55 0 1 744 398 151 4 8 chr9 20869765 20869832 -103206340 - B1_Mus1 SINE Alu -33 87 21 1 744 370 265 126 50 chr9 20869843 20870002 -103206170 - B3A SINE B2 -1 197 27 1 744 572 177 361 0 chr9 20870014 20870172 -103206000 - B3 SINE B2 0 216 2 1 744 562 210 50 7 chr9 20870269 20870408 -103205764 - B1F SINE Alu 0 149 5 1 744 182 103 0 0 chr9 20871687 20871716 -103204456 + L4 LINE RTE 1790 1818 -211 1 744 513 275 53 0 chr9 20872656 20872787 -103203385 - ID_B1 SINE B4 -4 220 83 1 744 197 323 16 0 chr9 20872805 20872867 -103203305 + L2b LINE L2 3011 3073 -302 1 744 306 0 0 0 chr9 20872972 20873006 -103203166 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 1 744 758 130 8 24 chr9 20873010 20873136 -103203036 - B1_Mur4 SINE Alu -7 143 20 1 744 308 191 9 153 chr9 20873040 20873151 -103203021 - MT2B LTR ERVL -337 264 170 1 744 261 139 0 0 chr9 20873257 20873300 -103202872 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1 744 1063 95 0 20 chr9 20873302 20873452 -103202720 - B1_Mus1 SINE Alu 0 148 2 1 744 674 186 20 46 chr9 20873700 20873852 -103202320 - B1_Mur2 SINE Alu 0 149 2 1 744 341 257 0 95 chr9 20873752 20873868 -103202304 - MT2B LTR ERVL -344 257 153 1 744 1249 65 0 6 chr9 20873881 20874051 -103202121 + B2_Mm2 SINE B2 2 170 -25 1 744 1396 71 20 0 chr9 20874051 20874248 -103201924 + L1_Mus3 LINE L1 6438 6638 0 1 744 716 133 53 0 chr9 20874255 20874368 -103201804 + PB1D9 SINE Alu 2 120 0 1 744 333 262 148 54 chr9 20874715 20874864 -103201308 - RSINE1 SINE B4 0 165 3 1 744 258 298 62 28 chr9 20875121 20875266 -103200906 - MIRb SINE MIR -57 211 62 1 744 414 57 0 0 chr9 20875332 20875385 -103200787 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 744 507 99 125 29 chr9 20875422 20875526 -103200646 - B1_Mur2 SINE Alu -4 145 32 1 744 235 70 0 51 chr9 20875726 20875772 -103200400 - PB1 SINE Alu -7 120 67 1 744 456 298 26 13 chr9 20875809 20875962 -103200210 + RSINE1 SINE B4 11 165 0 1 744 495 145 0 0 chr9 20875962 20876045 -103200127 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 744 375 283 46 28 chr9 20877058 20877167 -103199005 + B1_Mur2 SINE Alu 28 138 -11 1 744 500 242 0 32 chr9 20877201 20877325 -103198847 + B1F SINE Alu 11 130 -19 1 744 461 148 33 22 chr9 20877385 20877475 -103198697 + ID_B1 SINE B4 133 223 -1 1 744 282 175 143 0 chr9 20878109 20878172 -103198000 - B3 SINE B2 -17 199 128 1 744 492 246 106 0 chr9 20878428 20878570 -103197602 - RSINE1 SINE B4 -6 159 3 1 744 22 0 0 0 chr9 20879360 20879382 -103196790 + AT_rich Low_complexity Low_complexity 1 22 0 1 744 26 0 0 0 chr9 20879690 20879716 -103196456 + AT_rich Low_complexity Low_complexity 1 26 0 1 744 233 233 0 77 chr9 20881378 20881443 -103194729 + ID SINE ID 20 79 -145 1 744 420 228 93 16 chr9 20881517 20881646 -103194526 + ID_B1 SINE B4 86 224 0 1 744 277 321 73 0 chr9 20881957 20882066 -103194106 - RSINE1 SINE B4 -46 119 3 1 744 233 256 90 34 chr9 20882081 20882105 -103194067 - PB1D10 SINE Alu 0 117 24 1 744 253 261 15 0 chr9 20882105 20882170 -103194002 - ID_B1 SINE B4 -54 170 105 1 744 336 241 0 0 chr9 20882304 20882441 -103193731 + (TG)n Simple_repeat Simple_repeat 2 138 0 1 744 420 256 0 0 chr9 20882482 20882903 -103193269 + (TG)n Simple_repeat Simple_repeat 1 421 0 1 744 293 254 14 0 chr9 20882910 20882981 -103193191 - B4 SINE B4 -6 286 215 1 744 249 326 163 45 chr9 20883004 20883206 -103192966 - B4 SINE B4 -4 288 63 1 744 451 188 31 10 chr9 20883244 20883341 -103192831 - B1F2 SINE Alu -7 142 44 1 744 262 277 79 69 chr9 20883407 20883508 -103192664 - B4 SINE B4 -152 140 39 1 744 695 216 43 7 chr9 20886460 20886600 -103189572 - B1_Mur1 SINE Alu -2 147 3 1 744 321 286 100 31 chr9 20886632 20886762 -103189410 - B4A SINE B4 -41 251 113 1 744 257 91 45 0 chr9 20886763 20886807 -103189365 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 1 744 313 117 16 16 chr9 20886821 20886882 -103189290 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 1 744 448 266 30 0 chr9 20886882 20887012 -103189160 + PB1D10 SINE Alu 1 144 -5 1 744 229 132 0 0 chr9 20887099 20887137 -103189035 + B3A SINE B2 40 77 -121 1 744 353 223 38 28 chr9 20887283 20887389 -103188783 - PB1D9 SINE Alu 0 120 14 1 744 1605 233 72 49 chr9 20887440 20887950 -103188222 + RLTR20C LTR ERVK 13 534 0 1 744 294 301 43 50 chr9 20888150 20888290 -103187882 + RMER3D-int LTR ERVK 159 297 -2545 1 744 1555 42 0 0 chr9 20888543 20888732 -103187440 - B2_Mm1a SINE B2 -4 189 1 1 744 514 225 81 24 chr9 20889016 20889139 -103187033 + B1_Mur4 SINE Alu 21 150 0 1 744 186 103 0 0 chr9 20889196 20889225 -103186947 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 1 744 331 211 70 0 chr9 20889262 20889333 -103186839 - RSINE1 SINE B4 -49 116 41 1 744 218 305 48 24 chr9 20889318 20889354 -103186818 - ID_B1 SINE B4 -127 97 12 1 744 218 250 0 0 chr9 20889354 20889402 -103186770 - ID4 SINE ID -24 59 12 1 744 291 247 52 0 chr9 20889370 20889447 -103186725 - ZP3AR Satellite Satellite -127 85 5 1 744 190 306 0 31 chr9 20889529 20889593 -103186579 - MIRb SINE MIR -193 75 14 1 744 515 274 38 25 chr9 20889777 20889934 -103186238 + RSINE1 SINE B4 7 165 0 1 744 254 337 56 11 chr9 20889988 20890078 -103186094 + B4A SINE B4 75 168 -124 1 744 407 198 49 0 chr9 20890007 20890088 -103186084 + PB1D9 SINE Alu 9 93 -27 1 744 390 294 106 34 chr9 20890212 20890420 -103185752 + ID_B1 SINE B4 1 223 -1 1 744 298 308 44 0 chr9 20890431 20890522 -103185650 + B1F SINE Alu 1 95 -54 1 744 859 215 0 24 chr9 20891301 20891468 -103184704 - B3 SINE B2 -53 163 1 1 744 462 209 129 34 chr9 20891472 20891650 -103184522 - B2_Mm2 SINE B2 0 195 1 1 744 238 217 100 0 chr9 20891767 20891845 -103184327 + PB1D10 SINE Alu 14 99 -18 1 744 499 236 247 22 chr9 20891847 20892029 -103184143 + ID_B1 SINE B4 2 224 0 1 744 272 308 12 25 chr9 20892099 20892179 -103183993 + ID SINE ID 2 80 -144 1 744 321 93 0 0 chr9 20892193 20892247 -103183925 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 744 274 263 66 0 chr9 20892579 20892655 -103183517 - ID_B1 SINE B4 -17 207 127 1 744 462 250 36 0 chr9 20892754 20892866 -103183306 - B1_Mus1 SINE Alu -20 128 13 1 744 365 326 111 32 chr9 20893060 20893250 -103182922 - B4A SINE B4 -85 207 3 1 744 334 384 7 28 chr9 20893644 20893786 -103182386 + ID_B1 SINE B4 82 220 -4 1 744 922 199 69 5 chr9 20893808 20894010 -103182162 + B3 SINE B2 1 215 -1 1 744 218 357 31 0 chr9 20894042 20894140 -103182032 + B1F SINE Alu 49 149 0 1 744 387 0 0 0 chr9 20894374 20894417 -103181755 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 744 496 202 18 35 chr9 20894437 20894550 -103181622 + PB1D9 SINE Alu 5 115 -5 1 744 302 268 157 14 chr9 20896667 20896807 -103179365 + ID_B1 SINE B4 64 223 -1 1 744 348 321 0 89 chr9 20896821 20896876 -103179296 + ID_B1 SINE B4 80 133 -91 1 744 1153 61 0 0 chr9 20896876 20897023 -103179149 + B1_Mus1 SINE Alu 2 148 0 1 744 348 321 0 89 chr9 20897023 20897090 -103179082 + ID_B1 SINE B4 134 191 -33 1 744 780 120 66 22 chr9 20897444 20897580 -103178592 - B1_Mur3 SINE Alu -1 148 7 1 744 1299 79 0 41 chr9 20897586 20897783 -103178389 - B2_Mm2 SINE B2 -5 190 2 1 744 477 291 232 5 chr9 20898454 20898678 -103177494 + RMER21B LTR ERV1 293 567 -275 1 744 695 95 0 9 chr9 20899975 20900081 -103176091 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 1 744 1295 60 64 27 chr9 20900087 20900275 -103175897 - B2_Mm2 SINE B2 0 195 1 1 744 514 159 120 9 chr9 20900278 20900386 -103175786 - PB1D9 SINE Alu 0 120 1 1 744 272 252 81 73 chr9 20900432 20900556 -103175616 - ZP3AR Satellite Satellite -46 166 42 1 744 233 269 60 0 chr9 20900547 20900614 -103175558 + LTR48 LTR ERV1 716 786 -1 1 744 774 167 7 40 chr9 20900725 20900875 -103175297 + B1_Mur4 SINE Alu 5 149 -1 1 744 424 245 32 0 chr9 20901047 20901141 -103175031 + PB1D7 SINE Alu 24 120 0 1 744 350 316 53 0 chr9 20901693 20901807 -103174365 - PB1 SINE Alu -7 120 1 1 744 889 134 22 0 chr9 20901915 20902049 -103174123 - B1_Mus2 SINE Alu -10 137 1 1 744 567 265 0 45 chr9 20902052 20902206 -103173966 - B1_Mur1 SINE Alu -2 147 1 1 744 419 266 109 27 chr9 20902239 20902386 -103173786 - RSINE1 SINE B4 -4 161 3 1 744 1440 240 56 21 chr9 20902396 20902771 -103173401 - RLTR18B LTR ERVK -5 507 120 1 744 837 238 38 5 chr9 20902784 20902970 -103173202 - RLTR18B LTR ERVK -320 192 1 1 744 430 190 38 0 chr9 20903131 20903210 -103172962 + B4 SINE B4 3 84 -208 1 744 1162 56 0 0 chr9 20903300 20903444 -103172728 - B1_Mus2 SINE Alu -2 145 2 1 744 401 162 72 108 chr9 20903446 20903557 -103172615 + RMER17C-int LTR ERVK 2609 2715 -523 1 744 1245 202 10 59 chr9 20903562 20903867 -103172305 + RMER10B LTR ERVL 107 396 -2 1 744 773 57 291 7 chr9 20904400 20904541 -103171631 - B2_Mm2 SINE B2 -14 181 1 1 744 292 249 65 0 chr9 20904679 20904772 -103171400 + B1_Mus1 SINE Alu 13 113 -7 1 744 229 373 59 8 chr9 20905553 20905672 -103170500 - B4 SINE B4 -87 205 81 1 744 427 202 42 11 chr9 20905685 20905780 -103170392 - ID_B1 SINE B4 0 224 127 1 744 248 316 14 63 chr9 20905690 20905832 -103170340 + YREP_Mm Unknown Unknown 182 316 -1496 1 744 226 184 0 0 chr9 20905874 20905912 -103170260 - B1_Mus2 SINE Alu -107 40 3 1 744 842 183 0 0 chr9 20905980 20906122 -103170050 - B1_Mur3 SINE Alu -3 146 5 1 744 224 273 24 61 chr9 20906184 20906203 -103169969 + B1_Mus1 SINE Alu 1 78 -69 1 744 309 194 16 0 chr9 20906203 20906265 -103169907 + ID_B1 SINE B4 95 157 -67 1 744 600 239 21 14 chr9 20906266 20906406 -103169766 + B1_Mur1 SINE Alu 1 141 -8 1 744 1178 112 37 5 chr9 20906428 20906616 -103169556 + B2_Mm2 SINE B2 2 195 0 1 744 466 249 178 22 chr9 20906706 20906891 -103169281 + B3 SINE B2 3 216 0 1 744 603 209 0 0 chr9 20907262 20907377 -103168795 - PB1D9 SINE Alu -5 115 1 1 744 285 196 0 0 chr9 20907412 20907468 -103168704 + B1F1 SINE Alu 94 149 0 1 744 415 183 0 0 chr9 20907475 20907546 -103168626 - B1_Mus2 SINE Alu -2 145 75 1 744 1343 84 16 0 chr9 20907561 20907751 -103168421 - B2_Mm2 SINE B2 -1 194 2 1 744 1045 68 0 26 chr9 20908014 20908150 -103168022 + B1_Mus1 SINE Alu 2 137 -11 1 744 933 9 0 0 chr9 20908150 20908256 -103167916 + (GA)n Simple_repeat Simple_repeat 1 106 0 1 744 1045 68 0 26 chr9 20908256 20908270 -103167902 + B1_Mus1 SINE Alu 138 148 0 1 744 373 291 154 0 chr9 20908515 20908690 -103167482 - MIR SINE MIR 0 262 61 1 744 771 253 80 59 chr9 20908722 20909008 -103167164 - B4 SINE B4 0 292 1 1 744 208 261 0 0 chr9 20909009 20909055 -103167117 - L2a LINE L2 -12 3414 3369 1 744 648 291 49 19 chr9 20910128 20910391 -103165781 - B4A SINE B4 -20 272 2 1 744 322 226 67 19 chr9 20910399 20910503 -103165669 - PB1D10 SINE Alu -8 109 1 1 744 544 213 103 0 chr9 20910503 20910570 -103165602 - ID SINE ID -141 83 1 1 744 291 241 125 12 chr9 20910584 20910664 -103165508 - PB1 SINE Alu -7 120 32 1 744 1090 96 0 0 chr9 20911185 20911331 -103164841 + B1_Mus2 SINE Alu 2 147 0 1 744 363 194 55 14 chr9 20911376 20911449 -103164723 + B3A SINE B2 27 102 -96 1 744 855 131 0 0 chr9 20911683 20911813 -103164359 + B1_Mus2 SINE Alu 9 138 -9 1 744 1133 109 124 5 chr9 20912631 20912833 -103163339 + URR1A DNA MER1_type 1 226 0 1 744 419 244 165 0 chr9 20913959 20914086 -103162086 - B1_Mur1 SINE Alu 0 149 2 1 744 1275 106 11 0 chr9 20914104 20914293 -103161879 - B2_Mm1t SINE B2 0 193 3 1 744 193 269 0 19 chr9 20915145 20915198 -103160974 - MIRc SINE MIR -108 160 109 1 744 574 258 110 6 chr9 20916260 20916424 -103159748 - B4A SINE B4 -6 286 106 1 744 442 274 10 0 chr9 20916630 20916732 -103159440 + ID_B1 SINE B4 118 220 -4 1 744 549 238 103 0 chr9 20916739 20916865 -103159307 + B1_Mur1 SINE Alu 1 139 -10 1 744 873 96 0 0 chr9 20916865 20916990 -103159182 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 1 744 1575 16 21 0 chr9 20917137 20917325 -103158847 + B2_Mm1a SINE B2 2 193 0 1 744 1238 81 35 0 chr9 20917348 20917520 -103158652 + B2_Mm1t SINE B2 2 179 -14 1 744 337 160 0 10 chr9 20917552 20917666 -103158506 + B2_Mm2 SINE B2 47 195 0 1 744 292 206 0 117 chr9 20917642 20917708 -103158464 - ID_B1 SINE B4 -2 222 166 1 744 376 242 182 0 chr9 20917708 20917840 -103158332 + B4A SINE B4 1 156 -136 1 744 246 269 0 0 chr9 20917894 20917946 -103158226 + (CACG)n Simple_repeat Simple_repeat 4 55 0 1 744 559 272 56 0 chr9 20917955 20918117 -103158055 - ID_B1 SINE B4 -53 171 1 1 744 518 299 22 0 chr9 20918119 20918253 -103157919 - ID_B1 SINE B4 -1 223 87 1 744 204 40 0 0 chr9 20918946 20918971 -103157201 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 744 410 221 12 0 chr9 20919447 20919533 -103156639 + ZP3AR Satellite Satellite 33 119 -93 1 744 229 224 60 0 chr9 20919510 20919577 -103156595 + ID SINE ID 1 71 -153 1 744 422 278 0 36 chr9 20920809 20920921 -103155251 + PB1D7 SINE Alu 6 113 -7 1 744 365 266 0 0 chr9 20920943 20921022 -103155150 + B4A SINE B4 49 127 -165 1 744 771 230 6 0 chr9 20921082 20921243 -103154929 + B3A SINE B2 1 162 -36 1 744 432 55 0 0 chr9 20921248 20921303 -103154869 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 744 272 295 12 37 chr9 20921303 20921384 -103154788 + B4A SINE B4 214 292 0 1 744 371 314 28 7 chr9 20921395 20921536 -103154636 + RSINE1 SINE B4 3 146 -19 1 744 1331 78 20 20 chr9 20921935 20922130 -103154042 + B2_Mm2 SINE B2 1 195 0 1 744 510 225 137 96 chr9 20922149 20922346 -103153826 + B3 SINE B2 11 215 -1 1 744 427 219 100 8 chr9 20922368 20922488 -103153684 + ID_B1 SINE B4 92 222 -2 1 744 569 252 40 7 chr9 20922495 20922643 -103153529 + RSINE1 SINE B4 2 154 -11 1 744 232 159 45 0 chr9 20922643 20922687 -103153485 - ID_B1 SINE B4 -129 95 50 1 744 615 231 47 17 chr9 20923057 20923229 -103152943 + B3A SINE B2 4 180 -18 1 744 1398 44 39 0 chr9 20923263 20923443 -103152729 + B2_Mm2 SINE B2 3 189 -6 1 744 1228 27 0 0 chr9 20923451 20923598 -103152574 + B1_Mm SINE Alu 1 147 0 1 744 283 80 138 62 chr9 20923615 20923695 -103152477 + L1Md_F2 LINE L1 6497 6582 0 1 744 295 21 20 41 chr9 20923701 20923750 -103152422 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 1 744 747 29 0 87 chr9 20923757 20923852 -103152320 + B1_Mm SINE Alu 43 136 -11 1 744 200 34 0 33 chr9 20923852 20923882 -103152290 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 744 1118 75 0 0 chr9 20923889 20924035 -103152137 + B1_Mus2 SINE Alu 2 147 0 1 744 747 29 0 87 chr9 20924035 20924046 -103152126 + B1_Mm SINE Alu 137 147 0 1 744 216 0 0 0 chr9 20924063 20924087 -103152085 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 744 1197 64 0 0 chr9 20924091 20924248 -103151924 + B2_Mm2 SINE B2 2 158 -37 1 744 252 0 0 0 chr9 20924249 20924277 -103151895 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 744 308 280 77 39 chr9 20925229 20925359 -103150813 + B1F SINE Alu 15 149 0 1 744 648 94 135 38 chr9 20925371 20925504 -103150668 + B1_Mur4 SINE Alu 1 146 -4 1 744 183 80 0 0 chr9 20925505 20925530 -103150642 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 744 547 262 7 14 chr9 20925541 20925684 -103150488 + RSINE1 SINE B4 3 144 -21 1 744 755 234 10 59 chr9 20926401 20926605 -103149567 - B3A SINE B2 0 198 5 1 744 425 345 0 0 chr9 20926629 20926748 -103149424 - B1F SINE Alu -28 121 3 1 744 410 352 6 12 chr9 20926767 20926928 -103149244 - ID_B1 SINE B4 0 224 65 1 744 270 299 0 38 chr9 20926943 20927023 -103149149 - PB1D10 SINE Alu -29 88 12 1 744 676 188 16 0 chr9 20927142 20927270 -103148902 - B1_Mus2 SINE Alu 0 147 18 1 744 736 144 29 126 chr9 20927275 20927481 -103148691 + B2_Mm2 SINE B2 1 186 -9 1 744 1072 63 0 0 chr9 20927507 20927650 -103148522 + B1_Mus1 SINE Alu 6 148 0 1 744 527 184 199 26 chr9 20927713 20927869 -103148303 + B2_Mm2 SINE B2 1 183 -12 1 744 564 196 0 0 chr9 20927893 20927990 -103148182 + B1_Mur4 SINE Alu 2 98 -52 1 744 329 276 124 0 chr9 20928073 20928178 -103147994 - B3A SINE B2 -1 197 80 1 744 273 295 134 0 chr9 20928226 20928338 -103147834 + L2c LINE L2 3260 3386 -1 1 744 251 184 0 0 chr9 20928669 20928718 -103147454 - MER117 DNA MER1_type -50 147 99 1 744 414 53 0 0 chr9 20929202 20929259 -103146913 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 744 576 140 90 0 chr9 20929692 20929792 -103146380 + PB1D9 SINE Alu 2 110 -10 1 744 533 332 27 36 chr9 20930037 20930262 -103145910 - ID_B1 SINE B4 0 224 2 1 744 884 215 65 59 chr9 20930387 20930728 -103145444 + RLTR15 LTR ERVK 1 343 -16 1 744 445 241 163 15 chr9 20931020 20931114 -103145058 - ZP3AR Satellite Satellite -54 158 44 1 744 855 172 213 0 chr9 20931114 20931283 -103144889 - B3 SINE B2 -11 205 1 1 744 445 241 163 15 chr9 20931283 20931323 -103144849 - ZP3AR Satellite Satellite -169 43 4 1 744 372 232 10 29 chr9 20931333 20931436 -103144736 - PB1D10 SINE Alu -7 110 10 1 744 297 105 35 17 chr9 20931870 20931928 -103144244 - ID_B1 SINE B4 0 224 166 1 744 252 0 0 0 chr9 20931940 20931968 -103144204 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1 744 1126 77 0 19 chr9 20931968 20932127 -103144045 - B2_Mm2 SINE B2 -38 157 2 1 744 387 273 27 18 chr9 20932253 20932365 -103143807 - PB1 SINE Alu -9 118 6 1 744 361 357 16 0 chr9 20932531 20932657 -103143515 + ID_B1 SINE B4 91 218 -6 1 744 596 228 20 7 chr9 20932653 20932799 -103143373 + RSINE1 SINE B4 11 158 -7 1 744 257 204 0 20 chr9 20932873 20932923 -103143249 + PB1D9 SINE Alu 62 110 -10 1 744 302 286 73 15 chr9 20932965 20933136 -103143036 + MIRm SINE MIR 31 209 -67 1 744 312 303 73 0 chr9 20933302 20933411 -103142761 + RSINE1 SINE B4 2 118 -47 1 744 327 49 0 0 chr9 20933429 20933470 -103142702 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 744 798 153 30 0 chr9 20933617 20933748 -103142424 + B1_Mur4 SINE Alu 16 150 0 1 744 1132 61 0 0 chr9 20933751 20933898 -103142274 + B1_Mus2 SINE Alu 1 147 0 1 744 244 308 12 181 chr9 20933930 20934267 -103141905 + RMER12 LTR ERVK 711 990 -332 1 744 954 125 7 0 chr9 20934336 20934480 -103141692 - B1_Mus1 SINE Alu -3 145 1 1 744 816 230 37 0 chr9 20934496 20934687 -103141485 - B3 SINE B2 -18 198 1 1 744 654 233 108 10 chr9 20934687 20934882 -103141290 - B4A SINE B4 -62 230 17 1 744 436 282 0 0 chr9 20934921 20935024 -103141148 - B1F SINE Alu -19 130 28 1 744 258 282 0 27 chr9 20935085 20935158 -103141014 - B1F SINE Alu -77 72 2 1 744 188 149 6 0 chr9 20935265 20935303 -103140869 + MIRb SINE MIR 213 251 -11 1 744 216 306 65 0 chr9 20936167 20936229 -103139943 + ID_B1 SINE B4 82 147 -77 1 744 1255 66 22 0 chr9 20936225 20936406 -103139766 + B2_Mm2 SINE B2 7 191 -4 1 744 565 135 25 158 chr9 20936477 20936504 -103139668 - B2_Mm1t SINE B2 0 193 169 1 744 1027 108 0 0 chr9 20936504 20936652 -103139520 + B1_Mus1 SINE Alu 1 148 0 1 744 565 135 25 158 chr9 20936652 20936782 -103139390 - B2_Mm1t SINE B2 -25 168 57 1 744 470 277 70 78 chr9 20936999 20937257 -103138915 + RLTR19-int LTR ERVK 4126 4381 -1756 1 744 791 110 123 43 chr9 20937283 20937304 -103138868 - B2_Mm2 SINE B2 -19 176 161 1 744 261 0 0 0 chr9 20937304 20937333 -103138839 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 744 797 108 151 0 chr9 20937333 20937473 -103138699 - B2_Mm1t SINE B2 -32 161 2 1 744 561 172 36 9 chr9 20937500 20937617 -103138555 - PB1D9 SINE Alu -34 114 4 1 744 1370 205 61 26 chr9 20937625 20937971 -103138201 - ORR1D2 LTR MaLR -10 360 3 1 744 606 230 138 109 chr9 20938173 20938341 -103137831 - B3 SINE B2 0 216 41 1 744 1320 78 5 16 chr9 20938341 20938535 -103137637 - B2_Mm1a SINE B2 0 193 2 1 744 606 230 138 109 chr9 20938535 20938576 -103137596 - B3 SINE B2 -176 40 1 1 744 683 160 112 0 chr9 20938596 20938721 -103137451 - B1_Mus2 SINE Alu 0 147 9 1 744 336 48 0 0 chr9 20938725 20938767 -103137405 + (TTTTC)n Simple_repeat Simple_repeat 5 46 0 1 744 245 192 192 0 chr9 20938767 20938840 -103137332 - ID_B1 SINE B4 -12 212 126 1 744 436 105 26 0 chr9 20938855 20938931 -103137241 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 744 1591 183 50 11 chr9 20939140 20939500 -103136672 + ORR1D1 LTR MaLR 1 374 0 1 744 594 150 20 0 chr9 20939790 20939890 -103136282 - B1_Mus2 SINE Alu 0 147 46 1 744 386 246 30 69 chr9 20939942 20940073 -103136099 - B4 SINE B4 -18 274 149 1 744 225 0 0 0 chr9 20940191 20940216 -103135956 + (CCCCCT)n Simple_repeat Simple_repeat 2 26 0 1 744 344 280 0 111 chr9 20940241 20940371 -103135801 - PB1D7 SINE Alu -3 117 4 1 744 302 322 56 32 chr9 20941133 20941258 -103134914 + RSINE1 SINE B4 3 130 -35 1 744 325 210 91 0 chr9 20941342 20941423 -103134749 - B1F1 SINE Alu -60 89 1 1 744 330 290 19 39 chr9 20941471 20941575 -103134597 + PB1D7 SINE Alu 12 113 -7 1 744 419 198 81 0 chr9 20941579 20941665 -103134507 + B2_Mm2 SINE B2 2 94 -101 1 744 306 0 0 0 chr9 20941672 20941706 -103134466 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 744 270 0 0 0 chr9 20941737 20941767 -103134405 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 744 485 237 16 25 chr9 20942137 20942258 -103133914 - B1_Mur1 SINE Alu 0 149 30 1 744 290 316 31 10 chr9 20942436 20942532 -103133640 - RSINE1 SINE B4 -62 103 6 1 744 319 311 161 37 chr9 20942609 20942826 -103133346 - B4A SINE B4 0 292 49 1 744 365 232 42 10 chr9 20942898 20942994 -103133178 - ID_B1 SINE B4 -109 115 17 1 744 230 314 0 14 chr9 20943002 20943073 -103133099 - PB1D10 SINE Alu -1 116 47 1 744 206 118 0 0 chr9 20943102 20943136 -103133036 + (A)n Simple_repeat Simple_repeat 1 34 0 1 744 355 218 252 15 chr9 20943265 20943400 -103132772 + B3 SINE B2 44 210 -6 1 744 607 201 35 28 chr9 20943405 20943548 -103132624 + B1_Mm SINE Alu 1 144 -3 1 744 806 267 50 0 chr9 20944538 20944740 -103131432 + ID_B1 SINE B4 11 222 -2 1 744 221 286 112 121 chr9 20944771 20944848 -103131324 + B4 SINE B4 16 223 -64 1 744 377 252 16 50 chr9 20944848 20944981 -103131191 + PB1D9 SINE Alu 26 147 -2 1 744 230 293 158 0 chr9 20945061 20945143 -103131029 - B1F1 SINE Alu -3 146 52 1 744 505 286 36 0 chr9 20945871 20946039 -103130133 + B3 SINE B2 42 215 -1 1 744 25 51 0 0 chr9 20946063 20946102 -103130070 + AT_rich Low_complexity Low_complexity 1 39 0 1 744 295 293 73 85 chr9 20946131 20946295 -103129877 + RSINE1 SINE B4 3 164 -1 1 744 300 53 0 0 chr9 20946295 20946333 -103129839 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1 744 541 222 103 0 chr9 20948009 20948126 -103128046 - RSINE1 SINE B4 -34 131 3 1 744 295 290 13 88 chr9 20948126 20948280 -103127892 + ID_B1 SINE B4 34 175 -49 1 744 349 186 39 49 chr9 20948195 20948297 -103127875 + PB1D10 SINE Alu 12 112 -5 1 744 336 299 0 0 chr9 20948304 20948401 -103127771 + B1_Mus1 SINE Alu 15 111 -37 1 744 313 296 191 7 chr9 20948437 20948573 -103127599 + RSINE1 SINE B4 3 163 -2 1 744 685 119 18 0 chr9 20948639 20948748 -103127424 - B1_Mur3 SINE Alu 0 149 39 1 744 341 267 0 0 chr9 20948895 20948970 -103127202 - RSINE1 SINE B4 -90 75 1 1 744 308 349 23 0 chr9 20949102 20949231 -103126941 - B1F SINE Alu -11 138 7 1 744 240 35 0 0 chr9 20949281 20949310 -103126862 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 1 744 299 254 68 7 chr9 20949310 20949417 -103126755 - PB1 SINE Alu -11 116 5 1 744 226 254 0 33 chr9 20949421 20949482 -103126690 - Tigger5 DNA MER2_type -217 2189 2131 1 744 311 258 225 0 chr9 20949508 20949628 -103126544 + RSINE1 SINE B4 8 154 -11 1 744 512 272 174 23 chr9 20949724 20949942 -103126230 + B4A SINE B4 42 292 0 1 744 228 254 0 0 chr9 20950373 20950428 -103125744 - ID2 SINE ID -17 66 12 1 744 315 254 16 58 chr9 20950445 20950566 -103125606 - PB1D10 SINE Alu 0 117 2 1 744 39 0 0 0 chr9 20950569 20950608 -103125564 + AT_rich Low_complexity Low_complexity 1 39 0 1 744 554 185 134 0 chr9 20950619 20950738 -103125434 - B1_Mur4 SINE Alu -15 135 1 1 744 334 246 270 9 chr9 20950783 20950898 -103125274 - RSINE1 SINE B4 -19 146 2 1 744 212 265 149 84 chr9 20950901 20951008 -103125164 - PB1D10 SINE Alu -3 114 1 1 744 246 289 169 0 chr9 20950928 20951011 -103125161 - ID_B1 SINE B4 -49 175 79 1 744 644 255 31 37 chr9 20951786 20951949 -103124223 + RSINE1 SINE B4 2 163 -2 1 744 291 309 0 0 chr9 20952044 20952125 -103124047 - ID4_ SINE ID -1 82 2 1 744 650 250 29 35 chr9 20952272 20952446 -103123726 - ID_B1 SINE B4 0 224 52 1 744 476 246 36 29 chr9 20952473 20952611 -103123561 - ID_B1 SINE B4 -2 222 84 1 744 794 181 30 8 chr9 20952816 20952950 -103123222 - B1_Mur4 SINE Alu -13 137 1 1 744 581 319 0 0 chr9 20953602 20953762 -103122410 + RSINE1 SINE B4 6 165 0 1 744 334 323 28 96 chr9 20953864 20953880 -103122292 + B4A SINE B4 81 150 -142 1 744 779 203 0 0 chr9 20953880 20954023 -103122149 + B1F2 SINE Alu 7 149 0 1 744 334 323 28 96 chr9 20954023 20954042 -103122130 + B4A SINE B4 151 246 -46 1 744 496 214 62 0 chr9 20954599 20954711 -103121461 + PB1D9 SINE Alu 2 120 0 1 744 483 177 188 31 chr9 20954714 20954842 -103121330 + B1_Mur4 SINE Alu 2 149 -1 1 744 3970 31 0 0 chr9 20954844 20955296 -103120876 + L1Md_T LINE L1 6131 6582 0 1 744 946 231 10 20 chr9 20955306 20955509 -103120663 + B3 SINE B2 1 201 -15 1 744 638 184 23 53 chr9 20955564 20955696 -103120476 - B1_Mur2 SINE Alu -16 133 6 1 744 236 290 9 123 chr9 20955601 20955715 -103120457 - MT2B LTR ERVL -345 256 156 1 744 258 32 0 0 chr9 20955723 20955754 -103120418 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 744 758 193 0 43 chr9 20955755 20955896 -103120276 - B1_Mus1 SINE Alu -12 136 2 1 744 195 42 0 0 chr9 20955896 20955920 -103120252 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 744 768 210 258 0 chr9 20955938 20956105 -103120067 + B3 SINE B2 1 210 -6 1 744 821 168 23 0 chr9 20956148 20956279 -103119893 - B1_Mus2 SINE Alu -13 134 1 1 744 424 232 53 0 chr9 20956327 20956422 -103119750 - RSINE1 SINE B4 -29 136 37 1 744 1113 68 0 33 chr9 20956464 20956616 -103119556 + B1_Mus1 SINE Alu 2 148 0 1 744 240 130 0 0 chr9 20956617 20956663 -103119509 + (A)n Simple_repeat Simple_repeat 1 46 0 1 744 363 23 0 0 chr9 20956680 20956724 -103119448 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 744 582 268 7 14 chr9 20956741 20956881 -103119291 - RSINE1 SINE B4 -25 140 2 1 744 464 267 0 41 chr9 20957021 20957142 -103119030 - RSINE1 SINE B4 -17 148 33 1 744 348 244 106 32 chr9 20958891 20959014 -103117158 + ID_B1 SINE B4 86 217 -7 1 744 635 227 28 0 chr9 20959025 20959166 -103117006 + B1_Mus2 SINE Alu 3 147 0 1 744 415 227 63 9 chr9 20959270 20959381 -103116791 - PB1D10 SINE Alu 0 117 1 1 744 322 246 202 16 chr9 20959430 20959554 -103116618 + RSINE1 SINE B4 4 150 -15 1 744 883 150 0 52 chr9 20959621 20959776 -103116396 - B1_Mur3 SINE Alu 0 149 3 1 744 441 255 30 166 chr9 20959631 20959800 -103116372 - B4 SINE B4 -72 220 75 1 744 308 169 104 0 chr9 20960000 20960077 -103116095 + PB1D9 SINE Alu 36 120 0 1 744 201 39 0 0 chr9 20960463 20960489 -103115683 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 1 744 1070 68 0 26 chr9 20960489 20960640 -103115532 - B1_Mm SINE Alu 0 147 1 1 744 1293 125 16 0 chr9 20960649 20960833 -103115339 - B2_Mm2 SINE B2 -8 187 1 1 744 624 165 9 0 chr9 20960835 20960944 -103115228 - RLTR20A LTR ERVK -431 110 1 1 744 405 277 17 26 chr9 20960956 20961071 -103115101 + RSINE1 SINE B4 50 163 -2 1 744 252 0 0 0 chr9 20961073 20961101 -103115071 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 744 294 29 0 0 chr9 20961105 20961140 -103115032 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 744 823 169 42 14 chr9 20961336 20961480 -103114692 - B1_Mur2 SINE Alu 0 149 2 1 744 471 268 29 61 chr9 20961516 20961701 -103114471 - MIRb SINE MIR -26 242 58 1 744 1255 105 58 0 chr9 20961955 20962126 -103114046 - B2_Mm2 SINE B2 -14 181 1 1 744 635 205 19 45 chr9 20962164 20962340 -103113832 + B3 SINE B2 6 179 -16 1 744 333 252 0 130 chr9 20962383 20962402 -103113770 + MT2B LTR ERVL 151 153 -448 1 744 714 205 0 0 chr9 20962402 20962524 -103113648 + B1_Mur2 SINE Alu 1 122 -27 1 744 373 293 30 0 chr9 20962950 20963049 -103113123 + PB1D10 SINE Alu 4 105 -12 1 744 968 76 114 0 chr9 20963293 20963425 -103112747 + B1_Mm SINE Alu 1 147 0 1 744 1359 70 31 31 chr9 20963446 20963638 -103112534 + B2_Mm2 SINE B2 3 194 -1 1 744 799 157 15 0 chr9 20963655 20963789 -103112383 + B1_Mus2 SINE Alu 10 145 -2 1 744 436 219 0 0 chr9 20963788 20963870 -103112302 + ID_B1 SINE B4 130 211 -13 1 744 541 135 7 32 chr9 20963939 20964069 -103112103 - B1_Mus1 SINE Alu -21 126 6 1 744 660 162 30 37 chr9 20964069 20964209 -103111963 - B1_Mus2 SINE Alu -2 147 19 1 744 1425 100 5 0 chr9 20964209 20964399 -103111773 + B2_Mm1a SINE B2 2 192 -1 1 744 572 183 25 107 chr9 20964399 20964417 -103111755 - B1F2 SINE Alu -131 18 2 1 744 1429 50 39 0 chr9 20964459 20964640 -103111532 - B2_Mm2 SINE B2 -7 188 1 1 744 357 82 0 0 chr9 20964645 20964694 -103111478 + (T)n Simple_repeat Simple_repeat 1 49 0 1 744 1138 62 0 52 chr9 20964694 20964848 -103111324 - B1_Mus2 SINE Alu 0 147 2 1 744 472 228 65 32 chr9 20964861 20965015 -103111157 - B4A SINE B4 -119 173 15 1 744 381 202 95 0 chr9 20965250 20965334 -103110838 + PB1D9 SINE Alu 13 104 -16 1 744 681 239 109 25 chr9 20965365 20965567 -103110605 + ID_B1 SINE B4 1 219 -5 1 744 180 290 29 0 chr9 20965567 20965636 -103110536 - MIRb SINE MIR -138 130 60 1 744 236 289 111 0 chr9 20966659 20966749 -103109423 + PB1D9 SINE Alu 21 120 0 1 744 307 264 110 0 chr9 20966783 20966886 -103109286 + B1F1 SINE Alu 5 124 -3 1 744 212 226 23 35 chr9 20967435 20967522 -103108650 + (TTTA)n Simple_repeat Simple_repeat 3 88 0 1 744 596 219 17 0 chr9 20967537 20967656 -103108516 - RSINE1 SINE B4 -42 123 3 1 744 1595 32 0 21 chr9 20967894 20968083 -103108089 - B2_Mm1a SINE B2 -7 186 2 1 744 571 207 16 40 chr9 20968994 20969120 -103107052 + RSINE1 SINE B4 3 125 -40 1 744 375 23 0 0 chr9 20969239 20969283 -103106889 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 744 220 167 32 48 chr9 20970102 20970165 -103106007 + (CGGG)n Simple_repeat Simple_repeat 1 62 0 1 745 353 283 27 54 chr9 20971705 20971817 -103104355 - PB1D7 SINE Alu -11 109 1 1 745 331 309 0 31 chr9 20971732 20971829 -103104343 - ID_B1 SINE B4 -58 166 73 1 745 736 221 0 7 chr9 20973791 20973941 -103102231 - B1_Mur2 SINE Alu 0 149 1 1 745 549 234 27 7 chr9 20973950 20974096 -103102076 - B1F2 SINE Alu 0 149 1 1 745 347 219 37 119 chr9 20974094 20974203 -103101969 - B3A SINE B2 -1 197 98 1 745 1405 85 11 16 chr9 20974226 20974417 -103101755 - B2_Mm1t SINE B2 -1 192 3 1 745 1004 114 0 6 chr9 20974438 20974597 -103101575 + (GGAA)n Simple_repeat Simple_repeat 3 160 0 1 745 998 149 0 0 chr9 20974661 20974809 -103101363 + B1_Mur3 SINE Alu 2 149 0 1 745 1207 49 0 0 chr9 20974812 20974956 -103101216 + B1_Mus2 SINE Alu 2 145 -2 1 745 485 330 40 0 chr9 20975080 20975253 -103100919 - B3A SINE B2 -17 181 2 1 745 430 288 103 12 chr9 20975360 20975525 -103100647 - B4 SINE B4 -6 286 107 1 745 332 144 28 0 chr9 20975571 20975674 -103100498 - B1_Mur4 SINE Alu 0 150 8 1 745 691 97 10 0 chr9 20975644 20975747 -103100425 - B2_Mm2 SINE B2 -88 107 4 1 745 1084 203 9 32 chr9 20975750 20975969 -103100203 - B3 SINE B2 -1 215 2 1 745 389 175 12 12 chr9 20975988 20976069 -103100103 - B1_Mur2 SINE Alu -1 148 68 1 745 837 145 49 28 chr9 20976101 20976243 -103099929 - B1_Mus2 SINE Alu 0 147 3 1 745 407 307 52 13 chr9 20976268 20976423 -103099749 - B3 SINE B2 -1 215 55 1 745 354 246 123 0 chr9 20976501 20976615 -103099557 - RSINE1 SINE B4 -21 144 17 1 745 536 300 98 15 chr9 20976720 20976923 -103099249 + ID_B1 SINE B4 5 224 0 1 745 294 254 250 14 chr9 20976932 20977144 -103099028 - L2b LINE L2 -95 3280 3019 1 745 845 205 0 71 chr9 20977298 20977482 -103098690 - B3 SINE B2 -7 209 39 1 745 405 229 52 0 chr9 20977480 20977576 -103098596 + B3 SINE B2 112 212 -4 1 745 304 260 235 11 chr9 20977600 20977779 -103098393 + ID_B1 SINE B4 1 219 -5 1 745 609 256 27 43 chr9 20977795 20977979 -103098193 + B3A SINE B2 2 182 -16 1 745 1283 112 15 36 chr9 20978001 20978196 -103097976 - B2_Mm2 SINE B2 -4 191 1 1 745 691 180 49 28 chr9 20978225 20978368 -103097804 - B1_Mus2 SINE Alu 0 147 2 1 745 1412 81 11 0 chr9 20978382 20978568 -103097604 - B2_Mm2 SINE B2 -7 188 1 1 745 28 0 0 0 chr9 20978575 20978603 -103097569 + AT_rich Low_complexity Low_complexity 1 28 0 1 745 320 120 0 0 chr9 20978623 20978673 -103097499 - MT2A LTR ERVL 0 584 535 1 745 180 0 0 0 chr9 20978713 20978733 -103097439 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 745 384 200 0 0 chr9 20978733 20978813 -103097359 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 1 745 1311 226 210 5 chr9 20978813 20979222 -103096950 - MT2A LTR ERVL -40 493 1 1 745 507 271 199 22 chr9 20979222 20979403 -103096769 + B3 SINE B2 1 213 -3 1 745 226 320 41 10 chr9 20979406 20979504 -103096668 + MIRb SINE MIR 71 171 -97 1 745 921 82 7 7 chr9 20979524 20979660 -103096512 + B1_Mus1 SINE Alu 13 148 0 1 745 522 268 81 32 chr9 20979862 20980047 -103096125 + MER20 DNA MER1_type 24 217 -2 1 745 27 49 0 0 chr9 20980120 20980161 -103096011 + AT_rich Low_complexity Low_complexity 1 41 0 1 745 720 238 104 0 chr9 20980355 20980548 -103095624 - B3 SINE B2 0 216 4 1 745 22 0 0 0 chr9 20980563 20980585 -103095587 + AT_rich Low_complexity Low_complexity 1 22 0 1 745 220 312 31 0 chr9 20980630 20980694 -103095478 - RSINE1 SINE B4 -47 118 53 1 745 257 0 30 0 chr9 20980798 20980831 -103095341 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 745 1031 38 0 0 chr9 20980831 20980962 -103095210 - B1_Mm SINE Alu -10 137 7 1 745 430 272 15 74 chr9 20981069 20981204 -103094968 + RSINE1 SINE B4 11 137 -28 1 745 278 344 36 33 chr9 20981204 20981254 -103094918 + B3A SINE B2 26 195 0 1 745 290 132 0 70 chr9 20981258 20981315 -103094857 + B3A SINE B2 2 54 -144 1 745 454 180 92 15 chr9 20981392 20981522 -103094650 + B3A SINE B2 59 198 0 1 745 426 65 0 0 chr9 20981524 20981586 -103094586 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 1 745 633 137 0 0 chr9 20981589 20981684 -103094488 - B1_Mur3 SINE Alu -6 143 49 1 745 253 188 151 55 chr9 20981630 20981703 -103094469 - MT2B LTR ERVL -346 255 176 1 745 1367 76 43 0 chr9 20981704 20981888 -103094284 + B2_Mm2 SINE B2 2 193 -2 1 745 1251 28 0 0 chr9 20982016 20982159 -103094013 - B1_Mm SINE Alu 0 147 5 1 745 1418 88 0 63 chr9 20982159 20982366 -103093806 - B2_Mm2 SINE B2 -1 194 1 1 745 1156 75 0 20 chr9 20982390 20982540 -103093632 - B1_Mus1 SINE Alu 0 148 2 1 745 530 267 0 8 chr9 20982665 20982797 -103093375 - ID_B1 SINE B4 0 224 94 1 745 350 274 35 9 chr9 20982968 20983082 -103093090 + PB1D10 SINE Alu 1 117 0 1 745 207 0 0 0 chr9 20983201 20983224 -103092948 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 745 1184 57 0 0 chr9 20983226 20983367 -103092805 - B1_Mus2 SINE Alu -6 141 1 1 745 510 209 155 0 chr9 20983371 20983500 -103092672 - B1_Mur1 SINE Alu 0 149 1 1 745 231 128 0 49 chr9 20983827 20983868 -103092304 - PB1D10 SINE Alu -17 100 62 1 745 376 245 273 0 chr9 20983839 20983978 -103092194 - ID_B1 SINE B4 -24 200 24 1 745 204 209 86 43 chr9 20984002 20984072 -103092100 - MIRc SINE MIR -106 162 90 1 745 447 167 61 30 chr9 20984602 20984701 -103091471 - PB1D9 SINE Alu -15 105 4 1 745 587 235 93 22 chr9 20984740 20984800 -103091372 + ID SINE ID 9 81 -143 1 745 317 281 79 29 chr9 20984800 20984939 -103091233 + B1F SINE Alu 3 148 -1 1 745 631 253 27 20 chr9 20985051 20985200 -103090972 + RSINE1 SINE B4 2 151 -14 1 745 497 228 48 8 chr9 20985609 20985733 -103090439 + B1F2 SINE Alu 8 136 -13 1 745 180 115 0 0 chr9 20986443 20986469 -103089703 + L2b LINE L2 3332 3357 -18 1 745 466 208 143 54 chr9 20986583 20986751 -103089421 + B3A SINE B2 1 183 -15 1 745 1234 49 0 0 chr9 20986766 20986910 -103089262 - B1_Mus1 SINE Alu -1 147 4 1 745 500 237 34 61 chr9 20986916 20987064 -103089108 - B3A SINE B2 0 198 55 1 745 532 204 18 39 chr9 20987059 20987191 -103088981 - B1_Mur1 SINE Alu -22 127 1 1 745 525 131 0 0 chr9 20987191 20987275 -103088897 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 1 745 854 229 74 5 chr9 20987332 20987521 -103088651 - B3 SINE B2 -10 206 5 1 745 741 230 120 20 chr9 20987541 20987741 -103088431 - ID_B1 SINE B4 -3 221 2 1 745 344 198 24 105 chr9 20990278 20990402 -103085770 - PB1D10 SINE Alu 0 117 4 1 745 683 236 71 6 chr9 20990402 20990475 -103085697 - ID SINE ID -138 86 2 1 745 408 306 40 8 chr9 20991031 20991156 -103085016 - RSINE1 SINE B4 -3 162 34 1 745 198 333 110 9 chr9 20991539 20991648 -103084524 + MIR SINE MIR 116 235 -27 1 745 336 232 37 0 chr9 20991675 20991757 -103084415 + RSINE1 SINE B4 8 92 -73 1 745 259 271 54 85 chr9 20992033 20992162 -103084010 - B1_Mur4 SINE Alu -16 134 10 1 745 203 103 0 25 chr9 20992162 20992202 -103083970 + (TTTTTA)n Simple_repeat Simple_repeat 4 42 0 1 745 1254 48 0 0 chr9 20992228 20992375 -103083797 - B1_Mus1 SINE Alu -1 147 1 1 745 358 157 22 88 chr9 20992437 20992528 -103083644 - B3A SINE B2 -113 85 1 1 745 777 118 0 0 chr9 20992545 20992664 -103083508 + (TC)n Simple_repeat Simple_repeat 2 120 0 1 745 485 246 15 62 chr9 20992806 20992936 -103083236 - RSINE1 SINE B4 -38 127 4 1 745 442 258 0 10 chr9 20993062 20993160 -103083012 - PB1D10 SINE Alu -19 98 2 1 745 309 317 191 101 chr9 20993224 20993405 -103082767 - B4A SINE B4 0 292 85 1 745 1245 105 55 6 chr9 20993405 20993587 -103082585 + B2_Mm2 SINE B2 4 194 -1 1 745 309 317 191 101 chr9 20993587 20993672 -103082500 - B4A SINE B4 -208 84 2 1 745 1028 61 0 164 chr9 20993826 20994003 -103082169 - B1_Mus1 SINE Alu 0 148 1 1 745 272 265 73 0 chr9 20994004 20994072 -103082100 + RSINE1 SINE B4 93 165 0 1 745 376 247 120 25 chr9 20994103 20994261 -103081911 - L1M5 LINE L1 -416 5824 5652 1 745 643 244 100 0 chr9 20994313 20994473 -103081699 - B3 SINE B2 -7 209 34 1 745 1295 114 11 5 chr9 20994478 20994663 -103081509 - B2_Mm1t SINE B2 -5 188 3 1 745 29 28 0 0 chr9 20994663 20994699 -103081473 + AT_rich Low_complexity Low_complexity 1 36 0 1 745 556 157 74 57 chr9 20994764 20994886 -103081286 - B1_Mus1 SINE Alu 0 148 25 1 745 180 0 0 0 chr9 20995105 20995125 -103081047 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 745 24 0 0 0 chr9 20995221 20995245 -103080927 + AT_rich Low_complexity Low_complexity 1 24 0 1 745 414 57 0 0 chr9 20995319 20995372 -103080800 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 745 297 0 0 0 chr9 20995372 20995405 -103080767 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 745 414 248 50 25 chr9 20995405 20995525 -103080647 - RSINE1 SINE B4 -41 124 2 1 745 350 274 67 19 chr9 20995536 20995566 -103080606 - PB1D9 SINE Alu -1 119 11 1 745 370 230 14 0 chr9 20995566 20995640 -103080532 - ID_B1 SINE B4 -58 166 92 1 745 989 233 20 0 chr9 20996214 20996416 -103079756 - ID_B1 SINE B4 -13 211 6 1 745 668 253 11 51 chr9 20997090 20997265 -103078907 + ID_B1 SINE B4 57 224 0 1 745 280 274 14 0 chr9 20997522 20997595 -103078577 + MIR SINE MIR 176 249 -13 1 745 584 292 13 7 chr9 20997612 20997767 -103078405 + RSINE1 SINE B4 8 163 -2 1 745 991 102 73 0 chr9 20997809 20997946 -103078226 + B1_Mus1 SINE Alu 2 148 0 1 745 180 0 0 0 chr9 20997946 20997966 -103078206 + (A)n Simple_repeat Simple_repeat 1 20 0 1 745 669 279 18 25 chr9 20997972 20998144 -103078028 + B3A SINE B2 1 168 -30 1 745 369 0 0 0 chr9 20998144 20998185 -103077987 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 745 575 289 19 79 chr9 20998185 20998226 -103077946 + B3 SINE B2 163 201 -15 1 745 708 199 21 0 chr9 20998210 20998351 -103077821 + B1F2 SINE Alu 6 149 0 1 745 310 241 25 12 chr9 20998542 20998622 -103077550 + PB1D10 SINE Alu 28 108 -9 1 745 264 236 115 54 chr9 20998794 20998924 -103077248 + ID_B1 SINE B4 4 141 -83 1 745 264 59 0 0 chr9 20998980 20999014 -103077158 + (T)n Simple_repeat Simple_repeat 1 34 0 1 745 323 227 7 85 chr9 20999864 21000000 -103076172 - B3 SINE B2 0 198 66 1 745 327 89 143 0 chr9 21000000 21000056 -103076116 - B3 SINE B2 -151 65 2 1 745 288 0 0 0 chr9 21000513 21000545 -103075627 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 745 666 25 0 0 chr9 21000545 21000624 -103075548 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 745 333 0 0 0 chr9 21000787 21000824 -103075348 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 745 360 0 0 0 chr9 21000883 21000923 -103075249 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 745 410 326 151 22 chr9 21003275 21003454 -103072718 + B4A SINE B4 3 204 -88 5 745 665 197 88 0 chr9 21003471 21003608 -103072564 + B1_Mur2 SINE Alu 1 149 0 6 745 22 35 0 0 chr9 21003754 21003783 -103072389 + AT_rich Low_complexity Low_complexity 1 29 0 7 745 629 270 65 0 chr9 21003868 21004068 -103072104 + ID_B1 SINE B4 8 220 -4 8 745 384 22 0 0 chr9 21004068 21004113 -103072059 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 745 357 306 54 0 chr9 21004116 21004227 -103071945 + PB1D10 SINE Alu 1 117 0 1 745 498 258 15 8 chr9 21004250 21004383 -103071789 + B1_Mur1 SINE Alu 16 149 0 1 745 357 320 30 108 chr9 21004383 21004453 -103071719 + B4 SINE B4 101 287 -5 1 745 268 262 102 46 chr9 21004470 21004578 -103071594 + PB1D9 SINE Alu 7 120 0 1 745 790 159 8 0 chr9 21004604 21004730 -103071442 + B1_Mus2 SINE Alu 3 129 -18 1 745 917 69 8 15 chr9 21004722 21004855 -103071317 - B2_Mm2 SINE B2 -63 132 1 1 745 344 260 29 29 chr9 21004901 21005004 -103071168 + PB1D10 SINE Alu 9 111 -6 1 745 291 284 80 0 chr9 21006256 21006344 -103069828 + ID_B1 SINE B4 36 130 -94 1 745 946 86 7 0 chr9 21006344 21006483 -103069689 + B1_Mus1 SINE Alu 9 148 0 1 745 410 289 55 88 chr9 21006538 21006720 -103069452 + B3A SINE B2 1 176 -22 1 745 327 174 0 0 chr9 21006725 21006774 -103069398 + T-rich Low_complexity Low_complexity 21 69 0 2 745 1218 68 0 0 chr9 21006774 21006921 -103069251 - B1_Mus2 SINE Alu 0 147 1 2 745 327 174 0 0 chr9 21006921 21006940 -103069232 + T-rich Low_complexity Low_complexity 2 20 0 2 745 226 346 0 58 chr9 21006940 21007026 -103069146 + B4A SINE B4 212 292 0 2 745 429 198 22 0 chr9 21007073 21007164 -103069008 + PB1D9 SINE Alu 13 105 -15 2 745 843 175 83 12 chr9 21007176 21007344 -103068828 + B2_Mm2 SINE B2 1 180 -15 2 745 186 71 0 0 chr9 21007347 21007375 -103068797 + (T)n Simple_repeat Simple_repeat 1 28 0 2 745 894 105 113 0 chr9 21007387 21007520 -103068652 + B1_Mus1 SINE Alu 1 148 0 2 745 419 328 14 28 chr9 21008077 21008218 -103067954 - RSINE1 SINE B4 -21 144 6 2 745 225 0 0 0 chr9 21008240 21008265 -103067907 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 745 317 312 96 13 chr9 21008280 21008436 -103067736 - B4 SINE B4 -13 279 111 3 745 381 141 0 30 chr9 21008371 21008437 -103067735 - B1_Mur4 SINE Alu -61 89 26 3 745 573 246 141 15 chr9 21008437 21008635 -103067537 - B4 SINE B4 -65 227 5 3 745 264 256 0 0 chr9 21010114 21010200 -103065972 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 745 221 227 38 62 chr9 21010228 21010308 -103065864 + ID_B1 SINE B4 80 157 -67 3 745 310 336 36 0 chr9 21010237 21010347 -103065825 + PB1D9 SINE Alu 6 119 -1 3 745 706 238 30 3 chr9 21010363 21010529 -103065643 + ID_B1 SINE B4 79 251 -41 3 745 762 230 39 11 chr9 21011024 21011204 -103064968 - ID_B1 SINE B4 -39 185 1 3 745 221 368 11 0 chr9 21011707 21011802 -103064370 + PB1 SINE Alu 18 113 -14 3 745 572 191 30 38 chr9 21011936 21012067 -103064105 - B1_Mur1 SINE Alu 0 149 20 3 745 413 255 153 25 chr9 21012149 21012274 -103063898 + B3 SINE B2 35 179 -37 4 745 396 40 0 0 chr9 21012274 21012324 -103063848 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 745 413 255 153 25 chr9 21012324 21012355 -103063817 + B3 SINE B2 180 211 -5 4 745 928 164 0 0 chr9 21012357 21012503 -103063669 + B1_Mus1 SINE Alu 1 146 -2 4 745 418 240 19 9 chr9 21012513 21012618 -103063554 + B1_Mur1 SINE Alu 43 148 -1 4 745 372 200 234 195 chr9 21012640 21012670 -103063502 - B3 SINE B2 -2 214 181 4 745 315 104 0 0 chr9 21012670 21012718 -103063454 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 745 372 200 234 195 chr9 21012718 21012792 -103063380 - B3 SINE B2 -36 180 99 4 745 902 99 122 0 chr9 21012792 21012923 -103063249 + B1_Mus2 SINE Alu 1 147 0 4 745 372 200 234 195 chr9 21012923 21013022 -103063150 - B3 SINE B2 -118 98 2 4 745 340 253 25 0 chr9 21013066 21013145 -103063027 - PB1D7 SINE Alu -8 112 32 4 745 311 211 121 11 chr9 21013170 21013261 -103062911 - ID_B1 SINE B4 0 224 124 4 745 342 0 0 0 chr9 21013295 21013333 -103062839 + (T)n Simple_repeat Simple_repeat 1 38 0 4 745 626 235 88 0 chr9 21013337 21013473 -103062699 - B1_Mur1 SINE Alu 0 149 2 5 745 1489 38 49 0 chr9 21013492 21013675 -103062497 - B2_Mm2 SINE B2 0 195 4 5 745 544 126 29 10 chr9 21013681 21013785 -103062387 - B1_Mus2 SINE Alu 0 147 42 5 745 231 257 14 28 chr9 21013730 21013802 -103062370 - RLTR25B LTR ERVK -530 498 428 5 745 234 194 0 0 chr9 21013808 21013870 -103062302 + CT-rich Low_complexity Low_complexity 2 63 0 5 745 324 0 0 0 chr9 21014009 21014045 -103062127 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 745 1366 44 0 6 chr9 21014177 21014358 -103061814 - B2_Mm2 SINE B2 -4 191 12 5 745 212 270 26 26 chr9 21014290 21014366 -103061806 - ID4_ SINE ID -6 77 2 5 745 189 0 0 0 chr9 21014366 21014387 -103061785 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 745 582 243 158 0 chr9 21014403 21014580 -103061592 - B3 SINE B2 -10 206 2 5 745 225 119 0 0 chr9 21014583 21014625 -103061547 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 6 745 614 170 49 62 chr9 21014630 21014774 -103061398 - B1_Mur4 SINE Alu -8 142 1 6 745 728 226 65 56 chr9 21014839 21015055 -103061117 - ID_B1 SINE B4 -4 220 3 6 745 387 287 35 0 chr9 21017787 21017902 -103058270 - RSINE1 SINE B4 -44 121 3 6 745 242 244 242 11 chr9 21017904 21017995 -103058177 - PB1D10 SINE Alu -5 112 1 6 745 363 327 83 25 chr9 21018092 21018249 -103057923 - ID_B1 SINE B4 -57 167 2 6 745 514 159 9 36 chr9 21018545 21018656 -103057516 - B1_Mur2 SINE Alu 0 149 42 6 745 980 217 19 14 chr9 21018696 21018911 -103057261 - B3 SINE B2 0 216 1 6 745 494 215 97 30 chr9 21018929 21019063 -103057109 - B1_Mur1 SINE Alu -1 148 6 6 745 1248 86 5 74 chr9 21019101 21019290 -103056882 + B2_Mm1t SINE B2 2 177 -16 6 745 1224 14 0 7 chr9 21019290 21019430 -103056742 + B1_Mm SINE Alu 2 140 -7 7 745 382 242 32 0 chr9 21019512 21019607 -103056565 - RSINE1 SINE B4 -49 116 19 7 745 379 188 67 56 chr9 21019653 21019743 -103056429 + MT2B LTR ERVL 167 257 -344 7 745 749 89 122 0 chr9 21019664 21019787 -103056385 + B1_Mus2 SINE Alu 9 146 -1 7 745 814 177 28 0 chr9 21019820 21019961 -103056211 + B1_Mus2 SINE Alu 1 145 -2 7 745 315 0 0 0 chr9 21020154 21020189 -103055983 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 7 745 386 224 65 57 chr9 21020301 21020424 -103055748 - ID_B1 SINE B4 -1 223 100 7 745 582 114 0 0 chr9 21020780 21020868 -103055304 + (CA)n Simple_repeat Simple_repeat 2 89 0 7 745 188 128 0 133 chr9 21020908 21020953 -103055219 + MIRc SINE MIR 121 159 -109 7 745 212 222 14 27 chr9 21021097 21021171 -103055001 + ID_B1 SINE B4 72 144 -80 7 745 1020 130 0 0 chr9 21021278 21021795 -103054377 + (GA)n Simple_repeat Simple_repeat 1 517 0 8 745 218 135 0 71 chr9 21021795 21021817 -103054355 + (CAGAGA)n Simple_repeat Simple_repeat 3 22 0 8 745 1059 117 0 0 chr9 21021817 21021997 -103054175 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 745 218 135 0 71 chr9 21021997 21022021 -103054151 + (CAGAGA)n Simple_repeat Simple_repeat 5 28 0 8 745 897 150 0 0 chr9 21022023 21022203 -103053969 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 745 587 151 0 8 chr9 21022208 21022223 -103053949 + polypurine Low_complexity Low_complexity 2 16 0 8 745 965 128 0 6 chr9 21022223 21022404 -103053768 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 745 587 151 0 8 chr9 21022404 21022515 -103053657 + GA-rich Low_complexity Low_complexity 17 127 0 8 745 222 62 0 0 chr9 21022531 21022563 -103053609 + (T)n Simple_repeat Simple_repeat 1 32 0 8 745 223 220 188 35 chr9 21022609 21022694 -103053478 - RSINE1 SINE B4 -6 159 62 8 745 1245 34 0 7 chr9 21022739 21022886 -103053286 - B1_Mus2 SINE Alu -1 146 1 9 745 652 180 54 8 chr9 21022944 21023073 -103053099 + B1_Mur2 SINE Alu 9 143 -6 9 745 393 262 100 6 chr9 21023063 21023222 -103052950 - B3A SINE B2 -10 185 5 9 745 21 0 0 0 chr9 21023231 21023252 -103052920 + AT_rich Low_complexity Low_complexity 1 21 0 9 745 1255 154 89 41 chr9 21023352 21023643 -103052529 - RLTR11B LTR ERVK 0 453 149 9 745 455 143 18 2 chr9 21023722 21023830 -103052342 - B1_Mus2 SINE Alu 0 117 6 9 745 198 0 0 0 chr9 21023888 21023910 -103052262 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 9 745 1411 40 63 6 chr9 21023931 21024105 -103052067 + B2_Mm2 SINE B2 2 185 -10 9 745 1244 35 0 0 chr9 21024155 21024296 -103051876 + B1_Mus2 SINE Alu 2 142 -5 9 745 467 247 175 24 chr9 21024312 21024328 -103051844 - B3A SINE B2 0 198 185 9 745 423 0 0 0 chr9 21024328 21024375 -103051797 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 745 545 214 120 8 chr9 21024375 21024524 -103051648 - B3 SINE B2 -14 184 8 9 745 566 231 0 0 chr9 21024606 21024714 -103051458 + PB1D10 SINE Alu 3 110 -7 1 745 224 337 74 0 chr9 21024724 21024819 -103051353 - B1F1 SINE Alu -15 134 33 1 745 593 227 7 36 chr9 21025351 21025488 -103050684 - ID_B1 SINE B4 -2 222 90 1 745 257 248 184 32 chr9 21025601 21025726 -103050446 + ID_B1 SINE B4 44 187 -37 1 745 492 207 270 29 chr9 21025902 21026076 -103050096 - B3 SINE B2 0 216 1 1 745 685 293 39 5 chr9 21026086 21026292 -103049880 - B3 SINE B2 -3 213 1 1 745 261 0 0 0 chr9 21026580 21026609 -103049563 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 745 333 74 0 0 chr9 21026703 21026759 -103049413 - B1_Mur4 SINE Alu -1 149 93 1 745 274 212 209 17 chr9 21026784 21026899 -103049273 - B1_Mur4 SINE Alu -2 148 12 1 745 569 200 26 17 chr9 21026970 21027087 -103049085 - B3A SINE B2 -78 120 3 1 745 304 281 132 0 chr9 21027120 21027234 -103048938 - RSINE1 SINE B4 -33 132 4 1 745 1038 56 0 7 chr9 21027249 21027392 -103048780 - B1_Mus2 SINE Alu 0 147 6 1 745 288 0 0 0 chr9 21027392 21027424 -103048748 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 745 357 24 0 0 chr9 21027424 21027465 -103048707 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 745 712 181 48 18 chr9 21027465 21027665 -103048507 - B3 SINE B2 0 195 2 1 745 1598 48 0 5 chr9 21027675 21027865 -103048307 - B2_Mm2 SINE B2 -5 190 2 1 745 1641 47 0 0 chr9 21027875 21028067 -103048105 - B2_Mm1t SINE B2 0 193 2 1 745 465 222 46 0 chr9 21028118 21028226 -103047946 - B1_Mur1 SINE Alu -32 117 5 1 745 803 233 182 8 chr9 21028224 21028466 -103047706 + MTD LTR MaLR 103 386 -33 1 745 223 329 0 0 chr9 21028795 21028865 -103047307 - B3A SINE B2 -110 88 19 1 745 1130 113 46 12 chr9 21029061 21029275 -103046897 + B2_Mm2 SINE B2 2 216 0 1 745 488 205 221 0 chr9 21029287 21029409 -103046763 + B1_Mur1 SINE Alu 1 149 0 1 745 325 212 0 111 chr9 21029460 21029550 -103046622 + ZP3AR Satellite Satellite 10 89 -123 1 745 209 108 27 0 chr9 21029551 21029588 -103046584 + (CCCCG)n Simple_repeat Simple_repeat 2 39 0 1 745 661 174 14 57 chr9 21030107 21030247 -103045925 - B1_Mur4 SINE Alu -10 140 7 1 745 236 250 45 30 chr9 21030432 21030498 -103045674 - B4A SINE B4 -224 68 2 1 745 236 242 129 0 chr9 21030554 21030616 -103045556 + RSINE1 SINE B4 3 72 -93 1 745 438 20 0 0 chr9 21030638 21030689 -103045483 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 745 1511 63 16 0 chr9 21030706 21030896 -103045276 + B2_Mm2 SINE B2 1 193 -2 1 745 814 109 41 61 chr9 21030937 21031084 -103045088 + B1_Mur4 SINE Alu 7 150 0 1 745 426 315 53 47 chr9 21031090 21031280 -103044892 + B4 SINE B4 102 292 0 1 745 527 321 6 24 chr9 21031307 21031473 -103044699 + RSINE1 SINE B4 3 165 0 1 745 778 129 121 0 chr9 21031507 21031639 -103044533 + B1_Mus1 SINE Alu 1 148 0 1 745 428 229 0 12 chr9 21031708 21031792 -103044380 + ID4_ SINE ID 1 83 0 1 745 447 261 84 0 chr9 21032115 21032234 -103043938 + RSINE1 SINE B4 2 130 -35 1 745 461 287 73 22 chr9 21032468 21032646 -103043526 - B3A SINE B2 -4 194 8 1 745 205 163 70 0 chr9 21032647 21032690 -103043482 + CT-rich Low_complexity Low_complexity 4 49 0 1 745 264 351 18 9 chr9 21032718 21032830 -103043342 - B4A SINE B4 -19 273 161 1 745 753 0 31 0 chr9 21032951 21033048 -103043124 + (TC)n Simple_repeat Simple_repeat 1 100 0 1 745 250 158 16 66 chr9 21033057 21033118 -103043054 - B1_Mur2 SINE Alu -55 94 37 1 745 338 255 117 0 chr9 21033314 21033408 -103042764 - PB1D9 SINE Alu -9 111 7 1 745 356 271 44 44 chr9 21033384 21033421 -103042751 - MT2B LTR ERVL -314 287 186 1 745 463 193 11 0 chr9 21033421 21033509 -103042663 - PB1D10 SINE Alu -28 89 1 1 745 359 262 22 51 chr9 21033534 21033671 -103042501 - B3 SINE B2 -75 141 9 1 745 851 125 13 65 chr9 21033841 21033995 -103042177 - B1_Mus1 SINE Alu -1 147 2 1 745 473 234 174 7 chr9 21034001 21034156 -103042016 - ID_B1 SINE B4 -7 217 37 1 745 303 277 24 89 chr9 21034227 21034350 -103041822 + PB1D7 SINE Alu 1 115 -5 1 745 377 241 172 39 chr9 21035392 21035592 -103040580 + ZP3AR Satellite Satellite 1 226 -2 1 745 378 278 0 0 chr9 21035973 21036063 -103040109 + ID_B1 SINE B4 112 201 -23 1 745 536 216 8 49 chr9 21036447 21036569 -103039603 - PB1D10 SINE Alu 0 117 1 1 745 252 284 54 0 chr9 21036979 21037053 -103039119 + ID2 SINE ID 2 79 -4 1 745 809 209 191 5 chr9 21037131 21037319 -103038853 - ID_B1 SINE B4 0 224 2 1 745 1143 129 84 0 chr9 21037397 21037575 -103038597 + B2_Mm2 SINE B2 2 194 -1 1 745 29 0 0 0 chr9 21038630 21038659 -103037513 + AT_rich Low_complexity Low_complexity 1 29 0 1 745 710 181 20 34 chr9 21038659 21038808 -103037364 + B1F2 SINE Alu 1 147 -2 1 745 295 101 60 179 chr9 21038822 21038906 -103037266 + B1_Mur2 SINE Alu 21 94 -55 1 745 201 74 0 0 chr9 21039053 21039080 -103037092 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 745 361 200 93 0 chr9 21039082 21039157 -103037015 + RSINE1 SINE B4 67 148 -17 1 745 236 307 22 33 chr9 21039348 21039439 -103036733 + PB1D10 SINE Alu 27 116 -1 1 745 282 73 0 0 chr9 21039503 21039544 -103036628 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 745 629 245 55 0 chr9 21039546 21039709 -103036463 - ID_B1 SINE B4 -37 187 16 1 745 617 151 0 54 chr9 21040078 21040190 -103035982 - B1_Mus2 SINE Alu -10 137 32 1 745 189 0 0 0 chr9 21040200 21040221 -103035951 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 745 263 179 11 58 chr9 21040224 21040332 -103035840 - PB1D7 SINE Alu -6 143 75 1 745 444 298 66 7 chr9 21040378 21040530 -103035642 + RSINE1 SINE B4 3 163 -2 1 745 549 165 169 23 chr9 21040643 21040773 -103035399 + B1_Mur2 SINE Alu 1 149 0 1 745 1186 75 0 0 chr9 21040813 21040960 -103035212 + B1_Mus2 SINE Alu 1 147 0 1 745 189 0 0 0 chr9 21040964 21040985 -103035187 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1 745 288 0 0 0 chr9 21040985 21041017 -103035155 + (GAA)n Simple_repeat Simple_repeat 2 33 0 1 745 505 210 33 46 chr9 21041043 21041227 -103034945 + B3 SINE B2 16 194 -1 1 745 522 264 16 0 chr9 21041285 21041410 -103034762 + ID_B1 SINE B4 95 221 -3 1 745 502 182 228 20 chr9 21042248 21042392 -103033780 - ID_B1 SINE B4 -54 238 81 1 745 198 297 45 32 chr9 21042681 21042769 -103033403 - L2b LINE L2 -13 3413 3287 1 745 22 0 0 0 chr9 21043321 21043343 -103032829 + GC_rich Low_complexity Low_complexity 1 22 0 1 745 22 35 0 0 chr9 21043566 21043595 -103032577 + GC_rich Low_complexity Low_complexity 1 29 0 1 745 715 179 206 11 chr9 21043945 21044120 -103032052 - B3 SINE B2 -5 211 3 1 745 522 195 16 66 chr9 21044128 21044249 -103031923 - PB1D9 SINE Alu -5 115 1 1 745 483 266 24 24 chr9 21044552 21044679 -103031493 + RSINE1 SINE B4 10 136 -29 1 745 815 50 200 0 chr9 21044706 21044826 -103031346 + B1_Mus2 SINE Alu 1 144 -3 1 745 829 242 54 0 chr9 21044832 21045018 -103031154 + B3 SINE B2 21 216 0 1 745 360 274 9 28 chr9 21045035 21045144 -103031028 + PB1D10 SINE Alu 10 116 -1 1 745 246 261 62 0 chr9 21045189 21045254 -103030918 + PB1D9 SINE Alu 39 107 -13 1 745 651 222 48 0 chr9 21045274 21045400 -103030772 + B1_Mur1 SINE Alu 1 132 -17 1 745 410 223 63 40 chr9 21045463 21045589 -103030583 + ID_B1 SINE B4 94 222 -2 1 745 231 350 134 17 chr9 21046223 21046342 -103029830 + ID_B1 SINE B4 81 213 -11 1 745 536 291 24 27 chr9 21046763 21046929 -103029243 + RSINE1 SINE B4 2 165 0 1 745 1284 20 7 0 chr9 21046975 21047121 -103029051 + B1_Mus2 SINE Alu 1 147 0 1 745 276 79 0 0 chr9 21047140 21047178 -103028994 - B1F SINE Alu -13 136 99 1 745 452 170 0 17 chr9 21047249 21047340 -103028832 + B1_Mur1 SINE Alu 33 147 -2 1 745 1048 200 53 5 chr9 21047374 21047580 -103028592 - B3 SINE B2 0 216 1 1 745 212 349 47 16 chr9 21047993 21048121 -103028051 + L2 LINE L2 2826 2957 -462 1 745 363 240 13 0 chr9 21049830 21049905 -103026267 + ID_B1 SINE B4 89 164 -60 1 745 571 229 23 15 chr9 21049906 21050039 -103026133 + B3A SINE B2 5 138 -60 1 745 639 213 16 0 chr9 21050129 21050251 -103025921 + RSINE1 SINE B4 6 129 -36 1 745 910 49 0 8 chr9 21050318 21050442 -103025730 + B1_Mus1 SINE Alu 18 140 -8 1 745 434 65 0 16 chr9 21050452 21050515 -103025657 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 1 745 219 290 88 61 chr9 21050584 21050698 -103025474 + PB1D10 SINE Alu 1 117 0 1 745 243 0 0 0 chr9 21051097 21051124 -103025048 + (T)n Simple_repeat Simple_repeat 1 27 0 1 745 897 98 7 53 chr9 21051146 21051165 -103025007 + B1_Mur4 SINE Alu 6 17 -133 1 745 3736 54 9 2 chr9 21051165 21051626 -103024546 - L1Md_F2 LINE L1 -1 6581 6118 2 745 897 98 7 53 chr9 21051626 21051757 -103024415 + B1_Mur4 SINE Alu 18 149 -1 1 745 362 234 250 31 chr9 21051990 21052118 -103024054 + RSINE1 SINE B4 2 157 -8 2 745 357 24 0 0 chr9 21052135 21052177 -103023995 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 745 657 189 59 29 chr9 21052199 21052335 -103023837 - B1_Mur1 SINE Alu -5 144 5 2 745 772 126 101 22 chr9 21053683 21053821 -103022351 - B1_Mur3 SINE Alu 0 149 1 2 745 429 328 0 26 chr9 21053857 21053973 -103022199 - RSINE1 SINE B4 0 165 53 2 745 243 0 0 0 chr9 21054613 21054640 -103021532 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 745 281 344 133 23 chr9 21055134 21055262 -103020910 + RSINE1 SINE B4 3 144 -21 2 745 333 0 0 0 chr9 21055276 21055313 -103020859 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 745 249 236 0 0 chr9 21056024 21056079 -103020093 - ID SINE ID -169 55 1 2 745 528 122 0 0 chr9 21056332 21056414 -103019758 + (GGA)n Simple_repeat Simple_repeat 1 82 0 2 745 250 241 47 35 chr9 21056752 21056838 -103019334 + MIR SINE MIR 70 156 -106 2 745 223 350 0 0 chr9 21056838 21056918 -103019254 + PB1D10 SINE Alu 6 85 -32 2 745 668 249 44 33 chr9 21056998 21057181 -103018991 + ID_B1 SINE B4 8 192 -32 2 745 509 223 0 28 chr9 21057182 21057305 -103018867 + B1_Mur3 SINE Alu 11 120 0 2 745 701 248 9 76 chr9 21057313 21057523 -103018649 + B3A SINE B2 3 198 0 2 745 584 213 90 28 chr9 21057549 21057694 -103018478 + RSINE1 SINE B4 2 155 -10 2 745 530 227 32 40 chr9 21057738 21057862 -103018310 - B1_Mur3 SINE Alu -25 124 2 2 745 318 318 12 124 chr9 21057862 21057920 -103018252 - MT2B LTR ERVL -448 153 115 2 745 229 283 0 104 chr9 21057920 21057987 -103018185 + PB1D7 SINE Alu 2 61 -59 2 745 530 207 0 26 chr9 21058050 21058164 -103018008 - PB1D9 SINE Alu -1 119 9 2 745 362 105 0 38 chr9 21058184 21058263 -103017909 + (T)n Simple_repeat Simple_repeat 1 76 0 2 745 1242 41 0 7 chr9 21058263 21058411 -103017761 - B1_Mus2 SINE Alu 0 147 1 2 745 232 164 0 68 chr9 21058683 21058694 -103017478 - PB1 SINE Alu 0 127 119 2 745 447 304 80 0 chr9 21058694 21058832 -103017340 - B1F2 SINE Alu 0 149 1 2 745 232 164 0 68 chr9 21058832 21058879 -103017293 - PB1 SINE Alu -9 118 73 2 745 206 154 0 25 chr9 21059143 21059183 -103016989 + MIRb SINE MIR 43 81 -187 2 745 856 115 26 6 chr9 21059184 21059543 -103016629 + (TG)n Simple_repeat Simple_repeat 1 366 0 2 745 1106 142 5 26 chr9 21059586 21059764 -103016408 + RMER6A LTR ERVK 41 215 -541 2 745 1147 42 28 0 chr9 21059764 21059907 -103016265 + B1_Mus2 SINE Alu 1 147 0 2 745 1106 142 5 26 chr9 21059907 21059923 -103016249 + RMER6A LTR ERVK 216 230 -526 2 745 425 307 44 0 chr9 21060148 21060285 -103015887 + RSINE1 SINE B4 2 144 -21 2 745 1208 74 0 0 chr9 21060324 21060472 -103015700 + B1_Mus1 SINE Alu 1 148 0 2 745 2672 117 22 143 chr9 21060489 21061022 -103015150 + RMER6A LTR ERVK 202 662 -94 2 745 1147 88 7 0 chr9 21061022 21061169 -103015003 + B1_Mus1 SINE Alu 1 148 0 2 745 2672 117 22 143 chr9 21061169 21061265 -103014907 + RMER6A LTR ERVK 663 755 -1 2 745 711 207 43 7 chr9 21061286 21061427 -103014745 - B1_Mur1 SINE Alu 0 149 4 2 745 449 181 11 0 chr9 21061440 21061534 -103014638 + CT-rich Low_complexity Low_complexity 2 96 0 2 745 647 235 81 23 chr9 21061534 21061708 -103014464 - B3 SINE B2 0 216 33 2 745 926 165 148 5 chr9 21061730 21061919 -103014253 + B3 SINE B2 1 216 0 2 745 209 333 0 0 chr9 21062452 21062505 -103013667 + C-rich Low_complexity Low_complexity 13 65 0 2 745 1617 31 0 25 chr9 21062505 21062703 -103013469 - B2_Mm2 SINE B2 -2 193 1 2 745 290 194 14 0 chr9 21062714 21062786 -103013386 + CT-rich Low_complexity Low_complexity 3 75 0 2 745 656 182 87 0 chr9 21062789 21062915 -103013257 - B1_Mur4 SINE Alu -13 137 1 2 745 270 250 81 97 chr9 21062915 21062953 -103013219 - MT2B LTR ERVL -447 154 119 2 745 279 230 0 0 chr9 21062953 21063013 -103013159 + CT-rich Low_complexity Low_complexity 19 78 0 2 745 1470 76 5 0 chr9 21063013 21063198 -103012974 - B2_Mm1a SINE B2 -6 187 2 2 745 279 230 0 0 chr9 21063198 21063211 -103012961 + polypyrimidine Low_complexity Low_complexity 6 18 0 2 745 832 186 14 0 chr9 21063213 21063358 -103012814 - B1_Mus1 SINE Alu -1 147 1 2 745 1433 79 21 0 chr9 21063372 21063561 -103012611 - B2_Mm2 SINE B2 -1 194 2 2 745 409 232 10 10 chr9 21063576 21063672 -103012500 - PB1D9 SINE Alu 0 120 25 2 745 306 266 202 0 chr9 21063918 21064027 -103012145 - B4A SINE B4 -123 169 39 2 745 411 38 0 0 chr9 21064061 21064114 -103012058 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 2 745 294 179 18 0 chr9 21064116 21064172 -103012000 - RSINE1 SINE B4 -106 59 3 2 745 270 0 0 0 chr9 21064318 21064348 -103011824 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2 745 301 265 0 14 chr9 21064348 21064417 -103011755 - ID_B1 SINE B4 -13 211 144 2 745 255 275 14 0 chr9 21064445 21064514 -103011658 + CT-rich Low_complexity Low_complexity 3 72 0 2 745 470 203 8 0 chr9 21064905 21065023 -103011149 + CT-rich Low_complexity Low_complexity 4 122 0 2 745 229 235 82 73 chr9 21065089 21065199 -103010973 + PB1D9 SINE Alu 3 113 -7 2 745 398 298 57 0 chr9 21065254 21065378 -103010794 + B3A SINE B2 37 167 -31 2 745 378 0 0 0 chr9 21065395 21065437 -103010735 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 745 622 110 21 2 chr9 21065469 21065577 -103010595 - B1_Mus1 SINE Alu 0 120 1 2 745 1254 63 17 0 chr9 21065579 21065753 -103010419 - B2_Mm2 SINE B2 -1 194 18 2 745 23 68 0 0 chr9 21065760 21065804 -103010368 + AT_rich Low_complexity Low_complexity 1 44 0 2 745 304 304 75 60 chr9 21065844 21065977 -103010195 + ID_B1 SINE B4 15 149 -75 2 745 653 264 51 20 chr9 21065978 21066175 -103009997 + B3 SINE B2 2 204 -12 2 745 268 243 43 0 chr9 21066203 21066273 -103009899 + ID_B1 SINE B4 143 215 -9 2 745 528 385 10 0 chr9 21066308 21066508 -103009664 - Tigger5 DNA MER2_type -2174 232 31 2 745 333 0 0 0 chr9 21066558 21066595 -103009577 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2 745 345 224 0 125 chr9 21066605 21066717 -103009455 - B1F SINE Alu -51 98 1 2 745 183 42 0 0 chr9 21066835 21066859 -103009313 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 745 484 306 7 7 chr9 21066863 21066998 -103009174 - RSINE1 SINE B4 -19 146 12 2 745 449 183 59 21 chr9 21067042 21067156 -103009016 - PB1D9 SINE Alu 0 150 24 2 745 458 96 0 14 chr9 21067157 21067231 -103008941 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 745 704 161 115 0 chr9 21067235 21067365 -103008807 - B1_Mus1 SINE Alu -2 146 2 2 745 529 181 286 39 chr9 21067389 21067567 -103008605 - ID_B1 SINE B4 0 224 3 2 745 312 196 0 0 chr9 21067952 21068008 -103008164 + ID_B1 SINE B4 98 153 -71 2 745 622 234 58 14 chr9 21068015 21068154 -103008018 + RSINE1 SINE B4 21 165 0 2 745 195 129 0 0 chr9 21068183 21068214 -103007958 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 745 351 212 0 48 chr9 21068245 21068329 -103007843 + ID_B1 SINE B4 145 224 0 2 745 1309 94 20 45 chr9 21068331 21068531 -103007641 + B2_Mm2 SINE B2 1 195 0 2 745 1634 32 16 0 chr9 21068548 21068737 -103007435 - B2_Mm1a SINE B2 0 193 2 2 745 526 279 112 0 chr9 21068908 21069087 -103007085 - ID_B1 SINE B4 -21 203 5 2 745 360 221 47 0 chr9 21069105 21069191 -103006981 + B1F SINE Alu 28 117 -32 2 745 207 301 32 21 chr9 21070320 21070415 -103005757 + MIR SINE MIR 59 154 -108 2 745 702 223 7 0 chr9 21070432 21070571 -103005601 + B1F SINE Alu 10 149 0 2 745 675 189 295 12 chr9 21070576 21070742 -103005430 + B3 SINE B2 1 213 -3 2 745 502 282 38 19 chr9 21070750 21070909 -103005263 + RSINE1 SINE B4 4 165 0 2 745 334 225 66 22 chr9 21071610 21071701 -103004471 + B1F1 SINE Alu 24 118 -31 2 745 269 26 0 26 chr9 21071702 21071741 -103004431 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 745 219 139 0 0 chr9 21071752 21071788 -103004384 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 2 745 814 111 24 0 chr9 21071906 21072032 -103004140 + B1_Mur4 SINE Alu 22 150 0 2 745 404 294 59 32 chr9 21072056 21072242 -103003930 + B3 SINE B2 26 216 0 2 745 1166 62 14 0 chr9 21072266 21072410 -103003762 - B1_Mus2 SINE Alu 0 147 2 2 745 734 131 77 0 chr9 21072447 21072577 -103003595 + B1_Mur4 SINE Alu 11 150 0 2 745 347 281 190 15 chr9 21073566 21073703 -103002469 + RSINE1 SINE B4 2 162 -3 2 745 237 65 0 0 chr9 21073703 21073734 -103002438 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2 745 475 226 0 28 chr9 21073745 21073854 -103002318 + RSINE1 SINE B4 3 108 -57 2 745 294 190 0 0 chr9 21073947 21074005 -103002167 - ID_B1 SINE B4 0 224 167 2 745 1156 68 0 7 chr9 21074020 21074167 -103002005 + B1_Mm SINE Alu 2 147 0 2 745 234 0 0 0 chr9 21074167 21074193 -103001979 + (A)n Simple_repeat Simple_repeat 1 26 0 2 745 518 244 102 0 chr9 21074261 21074388 -103001784 + B1_Mur2 SINE Alu 5 144 -5 2 745 648 212 29 86 chr9 21074459 21074634 -103001538 + B4 SINE B4 128 292 0 2 745 224 273 51 25 chr9 21074678 21074757 -103001415 + ID4 SINE ID 2 82 -1 2 745 413 265 190 23 chr9 21074802 21074976 -103001196 + ID_B1 SINE B4 5 207 -17 2 745 681 291 81 18 chr9 21075433 21075706 -103000466 - B4A SINE B4 -2 290 1 3 745 215 295 98 0 chr9 21075725 21075786 -103000386 - B4 SINE B4 -178 114 48 3 745 218 136 0 102 chr9 21076017 21076066 -103000106 + PB1D7 SINE Alu 18 61 -59 3 745 302 281 66 66 chr9 21076410 21076460 -102999712 + ID SINE ID 40 89 -135 3 745 264 237 99 48 chr9 21076460 21076578 -102999594 + B1F1 SINE Alu 1 122 -27 3 745 332 293 73 8 chr9 21076577 21076701 -102999471 + B4 SINE B4 73 204 -88 3 745 605 138 78 0 chr9 21076611 21076727 -102999445 + B1_Mus1 SINE Alu 23 147 -1 3 745 225 245 121 89 chr9 21076615 21076772 -102999400 + RLTR25B LTR ERVK 195 356 -672 3 745 236 185 169 0 chr9 21078763 21078828 -102997344 - ID_B1 SINE B4 -3 221 146 3 745 385 194 14 0 chr9 21078849 21078921 -102997251 - B1_Mur2 SINE Alu -14 135 63 3 745 214 325 12 12 chr9 21078932 21079013 -102997159 - ID4_ SINE ID 0 83 3 3 745 436 198 139 23 chr9 21079299 21079428 -102996744 + B1_Mur3 SINE Alu 3 146 -3 3 745 378 217 0 61 chr9 21079449 21079547 -102996625 - PB1D10 SINE Alu -13 104 13 3 745 243 331 43 86 chr9 21079471 21079610 -102996562 - B4A SINE B4 -118 174 42 3 745 273 196 28 78 chr9 21080046 21080146 -102996026 - B1F SINE Alu -3 117 31 3 745 184 152 43 21 chr9 21080162 21080209 -102995963 - MIRc SINE MIR -181 87 40 3 745 242 260 0 0 chr9 21080707 21080757 -102995415 - ID_B1 SINE B4 -16 208 159 3 745 379 269 65 0 chr9 21081174 21081282 -102994890 - ID_B1 SINE B4 -13 211 97 3 745 275 321 0 12 chr9 21081306 21081391 -102994781 - ID_B1 SINE B4 -74 150 67 3 745 931 259 14 0 chr9 21081962 21082174 -102993998 - B3 SINE B2 0 216 2 3 745 1077 52 73 0 chr9 21082875 21083011 -102993161 + B1_Mus1 SINE Alu 2 147 -1 3 745 207 0 0 0 chr9 21083013 21083036 -102993136 + (A)n Simple_repeat Simple_repeat 1 23 0 3 745 251 233 67 0 chr9 21083135 21083195 -102992977 - ID_B1 SINE B4 -26 198 135 3 745 265 287 67 34 chr9 21083193 21083312 -102992860 + Tigger5 DNA MER2_type 116 238 -2168 3 745 180 152 0 0 chr9 21083363 21083396 -102992776 + T-rich Low_complexity Low_complexity 1 33 0 3 745 449 187 33 0 chr9 21083421 21083512 -102992660 - ZP3AR Satellite Satellite -78 134 41 3 745 356 235 47 0 chr9 21084046 21084131 -102992041 - PB1D10 SINE Alu 0 117 29 3 745 397 274 40 20 chr9 21084070 21084219 -102991953 - ID_B1 SINE B4 -53 171 20 3 745 291 301 0 0 chr9 21084204 21084277 -102991895 - B1_Mur1 SINE Alu -21 128 56 3 745 240 35 0 0 chr9 21084323 21084352 -102991820 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 745 279 232 183 0 chr9 21084352 21084434 -102991738 - PB1D10 SINE Alu -11 106 10 3 745 465 196 78 0 chr9 21085007 21085109 -102991063 + RSINE1 SINE B4 2 111 -54 3 745 1627 42 0 16 chr9 21085186 21085380 -102990792 - B2_Mm1t SINE B2 -1 192 2 3 745 348 24 0 0 chr9 21085488 21085529 -102990643 + (TCC)n Simple_repeat Simple_repeat 2 42 0 3 745 355 268 93 0 chr9 21085742 21085839 -102990333 - PB1D10 SINE Alu 0 117 12 3 745 213 214 143 0 chr9 21085895 21085965 -102990207 - ID4_ SINE ID 0 83 4 3 745 298 241 36 0 chr9 21085940 21086023 -102990149 - ZP3AR Satellite Satellite -87 125 40 3 745 1193 68 0 0 chr9 21086888 21087035 -102989137 + B1_Mus2 SINE Alu 1 147 0 3 745 183 80 0 0 chr9 21087035 21087060 -102989112 + (A)n Simple_repeat Simple_repeat 1 25 0 3 745 432 265 207 16 chr9 21087154 21087342 -102988830 - B4A SINE B4 -58 234 11 3 745 1671 32 0 0 chr9 21087553 21087741 -102988431 - B2_Mm1t SINE B2 -4 189 2 3 745 262 273 33 43 chr9 21087776 21087868 -102988304 - BC1_Mm scRNA scRNA -45 107 17 3 745 959 80 29 0 chr9 21087898 21088036 -102988136 - B1_Mm SINE Alu 0 147 6 3 745 468 189 67 120 chr9 21087903 21088053 -102988119 - B4 SINE B4 -71 221 80 3 745 421 62 31 0 chr9 21088080 21088144 -102988028 + B1_Mus2 SINE Alu 73 138 -9 3 745 493 288 33 35 chr9 21088161 21088377 -102987795 - B3A SINE B2 0 216 4 3 745 426 324 21 7 chr9 21089108 21089248 -102986924 + RSINE1 SINE B4 4 145 -20 3 745 180 0 0 0 chr9 21089449 21089469 -102986703 + (A)n Simple_repeat Simple_repeat 1 20 0 3 745 682 189 83 0 chr9 21089486 21089618 -102986554 + B1_Mus2 SINE Alu 2 144 -3 3 745 304 266 26 35 chr9 21090125 21090238 -102985934 + ID_B1 SINE B4 113 224 0 3 745 243 79 0 0 chr9 21090332 21090370 -102985802 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 745 467 132 259 17 chr9 21090373 21090489 -102985683 - B1_Mus1 SINE Alu -1 147 4 3 745 234 0 0 0 chr9 21090568 21090594 -102985578 + (T)n Simple_repeat Simple_repeat 1 26 0 3 745 1205 47 0 39 chr9 21090594 21090748 -102985424 - B1_Mus1 SINE Alu 0 148 1 3 745 238 276 22 22 chr9 21090753 21090842 -102985330 - B4 SINE B4 -201 91 3 3 745 319 277 95 11 chr9 21090850 21090945 -102985227 - PB1D10 SINE Alu -6 111 9 3 745 643 131 75 0 chr9 21094006 21094113 -102982059 - B1_Mur4 SINE Alu -12 138 24 3 745 483 259 34 17 chr9 21094228 21094346 -102981826 + PB1D7 SINE Alu 1 120 0 3 745 1131 66 0 0 chr9 21094398 21094535 -102981637 + B1_Mus1 SINE Alu 2 138 -10 3 745 189 0 0 0 chr9 21094535 21094556 -102981616 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 745 1145 49 42 0 chr9 21096283 21096425 -102979747 - B1_Mus1 SINE Alu 0 148 1 3 745 512 200 102 23 chr9 21096434 21096562 -102979610 - B1_Mus2 SINE Alu 0 147 10 3 745 429 20 0 0 chr9 21096577 21096627 -102979545 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 3 745 390 298 113 1 chr9 21096648 21096797 -102979375 + B3 SINE B2 39 191 -7 3 745 445 237 79 89 chr9 21096797 21096819 -102979353 - B2_Mm2 SINE B2 -5 190 169 3 745 690 174 82 15 chr9 21096819 21096953 -102979219 - B1_Mur2 SINE Alu -6 143 1 3 745 530 160 34 92 chr9 21096953 21097120 -102979052 - B3 SINE B2 -27 168 3 3 745 1599 48 16 0 chr9 21097134 21097323 -102978849 - B2_Mm1a SINE B2 0 193 2 3 745 529 242 169 11 chr9 21097348 21097532 -102978640 - ID_B1 SINE B4 0 224 12 3 745 655 231 22 0 chr9 21097549 21097683 -102978489 - ID_B1 SINE B4 -1 223 87 3 745 257 306 138 51 chr9 21097591 21097808 -102978364 + MT2B LTR ERVL 22 257 -344 3 745 565 194 25 18 chr9 21097724 21097855 -102978317 + B1_Mus2 SINE Alu 5 149 0 3 745 627 200 15 46 chr9 21098873 21099004 -102977168 + B1_Mur2 SINE Alu 10 136 -13 3 745 378 0 0 0 chr9 21099008 21099050 -102977122 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 745 601 288 10 25 chr9 21099054 21099250 -102976922 + B3A SINE B2 3 195 -3 3 745 261 244 51 13 chr9 21099314 21099393 -102976779 + ID_B1 SINE B4 141 222 -2 3 745 267 284 9 46 chr9 21099410 21099522 -102976650 + B1F2 SINE Alu 1 109 -41 3 745 217 329 14 0 chr9 21100490 21100560 -102975612 + ID SINE ID 10 80 -144 3 745 337 280 50 10 chr9 21100978 21101079 -102975093 + ZP3AR Satellite Satellite 42 146 -66 3 745 327 132 0 0 chr9 21101044 21101097 -102975075 + ID4_ SINE ID 17 69 -14 3 745 307 251 38 75 chr9 21101459 21101612 -102974560 + B1F SINE Alu 1 149 0 3 745 560 204 40 66 chr9 21101614 21101766 -102974406 + B1_Mur1 SINE Alu 2 149 0 3 745 2241 145 48 72 chr9 21101780 21102197 -102973975 + MTB_Mm LTR MaLR 1 407 0 3 745 425 248 38 0 chr9 21102197 21102302 -102973870 + B3 SINE B2 2 110 -106 3 745 321 198 156 0 chr9 21102427 21102523 -102973649 + B3 SINE B2 106 216 0 3 93 408 40 0 0 chr9 21102570 21102620 -102973552 + (GGGA)n Simple_repeat Simple_repeat 3 52 0 3 746 465 84 0 0 chr9 21102956 21103027 -102973145 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 746 764 179 0 7 chr9 21103091 21103226 -102972946 + B1_Mur1 SINE Alu 16 149 0 3 746 195 42 0 0 chr9 21103371 21103395 -102972777 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 3 746 455 320 24 0 chr9 21103396 21103521 -102972651 - ID_B1 SINE B4 -7 217 90 3 746 235 320 56 120 chr9 21103861 21103921 -102972251 + MT2B2 LTR ERVL 107 157 -427 3 746 485 198 70 22 chr9 21103921 21104065 -102972107 + B1F SINE Alu 1 148 -1 3 746 230 291 0 0 chr9 21104065 21104110 -102972062 + ID4_ SINE ID 3 47 -36 3 746 504 277 30 61 chr9 21104110 21104179 -102971993 + RSINE1 SINE B4 2 68 -97 3 746 4902 87 10 45 chr9 21104179 21104957 -102971215 + RMER17A LTR ERVK 1 751 0 3 746 504 277 30 61 chr9 21104957 21105052 -102971120 + RSINE1 SINE B4 69 161 -4 3 746 769 194 8 0 chr9 21105073 21105202 -102970970 + B1_Mus1 SINE Alu 2 131 -17 3 746 180 0 0 0 chr9 21105217 21105237 -102970935 + (TTAAA)n Simple_repeat Simple_repeat 4 23 0 3 746 503 209 14 104 chr9 21105285 21105429 -102970743 + B1_Mur2 SINE Alu 18 148 -1 3 746 960 124 0 35 chr9 21105430 21105572 -102970600 + B1_Mur4 SINE Alu 1 137 -13 3 746 205 27 81 0 chr9 21105572 21105609 -102970563 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 746 1139 83 7 0 chr9 21105609 21105754 -102970418 - B1_Mus2 SINE Alu 0 147 2 3 746 611 291 77 0 chr9 21105797 21105993 -102970179 + B3 SINE B2 5 215 -1 3 746 587 250 138 26 chr9 21106000 21106189 -102969983 + B3 SINE B2 1 210 -6 3 746 411 308 83 0 chr9 21106207 21106327 -102969845 + B1_Mur1 SINE Alu 20 149 0 3 746 1136 88 70 0 chr9 21106413 21106584 -102969588 + B2_Mm2 SINE B2 3 185 -10 4 746 1202 172 14 19 chr9 21106585 21106798 -102969374 + B3 SINE B2 5 216 0 4 746 345 265 19 56 chr9 21107441 21107549 -102968623 - B1_Mur2 SINE Alu 0 149 46 4 746 745 284 0 32 chr9 21107599 21107788 -102968384 - B3A SINE B2 -15 183 1 4 746 200 290 14 14 chr9 21107800 21107870 -102968302 + (TATG)n Simple_repeat Simple_repeat 3 72 0 4 746 306 214 27 54 chr9 21107960 21108034 -102968138 - RSINE1 SINE B4 -64 101 30 4 746 883 221 20 1 chr9 21108227 21108415 -102967757 + B3 SINE B2 6 198 0 4 746 247 321 17 51 chr9 21108553 21108671 -102967501 - PB1D7 SINE Alu -6 114 1 4 746 312 350 19 0 chr9 21108571 21108674 -102967498 - B4A SINE B4 -105 187 83 4 746 640 185 37 0 chr9 21108687 21108822 -102967350 - B1_Mur2 SINE Alu -1 148 9 4 746 487 292 19 71 chr9 21108713 21108923 -102967249 - ID_B1 SINE B4 -25 199 1 4 746 463 280 70 23 chr9 21108981 21109109 -102967063 - ID_B1 SINE B4 -6 218 85 4 746 228 35 0 0 chr9 21109154 21109183 -102966989 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 746 355 312 0 0 chr9 21109394 21109487 -102966685 - ID_B1 SINE B4 -62 162 70 4 746 215 209 104 0 chr9 21110456 21110523 -102965649 - ID2 SINE ID -9 74 1 4 746 455 192 81 0 chr9 21110470 21110569 -102965603 - ZP3AR Satellite Satellite -56 156 50 4 746 319 312 28 0 chr9 21110573 21110682 -102965490 - PB1D10 SINE Alu -1 116 5 4 746 583 257 57 0 chr9 21110707 21110847 -102965325 + B1_Mur2 SINE Alu 2 149 0 4 746 887 203 56 56 chr9 21110856 21111070 -102965102 + B3 SINE B2 3 216 0 4 746 711 165 28 35 chr9 21111557 21111701 -102964471 + B1_Mus2 SINE Alu 5 147 0 4 746 238 339 35 9 chr9 21111769 21111882 -102964290 + RMER15 LTR ERVL 453 568 -7 4 746 343 275 28 0 chr9 21111885 21111994 -102964178 + (TG)n Simple_repeat Simple_repeat 2 113 0 4 746 953 254 34 49 chr9 21111995 21112260 -102963912 - B4A SINE B4 -2 290 30 4 746 275 0 0 28 chr9 21112306 21112342 -102963830 + (TAA)n Simple_repeat Simple_repeat 3 37 0 4 746 392 231 26 0 chr9 21112344 21112422 -102963750 + PB1D9 SINE Alu 32 111 -9 4 746 30 0 0 0 chr9 21112422 21112452 -102963720 + AT_rich Low_complexity Low_complexity 1 30 0 4 746 715 207 10 82 chr9 21112491 21112686 -102963486 + B3A SINE B2 2 182 -16 4 746 230 232 0 0 chr9 21112686 21112742 -102963430 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 746 292 191 206 0 chr9 21112769 21112837 -102963335 + B3 SINE B2 128 209 -7 4 746 409 238 54 53 chr9 21112865 21112996 -102963176 + B1_Mur1 SINE Alu 2 148 -1 4 746 1073 179 94 0 chr9 21113031 21113232 -102962940 - URR1A DNA MER1_type 0 226 7 4 746 310 230 36 99 chr9 21114342 21114453 -102961719 - ID_B1 SINE B4 0 224 121 4 746 397 304 0 17 chr9 21114514 21114631 -102961541 - PB1D10 SINE Alu -2 115 1 4 746 343 273 39 39 chr9 21114540 21114643 -102961529 - ID_B1 SINE B4 -52 172 70 4 746 504 214 39 0 chr9 21114776 21114879 -102961293 + ID_B1 SINE B4 118 224 0 4 746 327 335 39 74 chr9 21114898 21115127 -102961045 + ID_B1 SINE B4 2 222 -2 4 746 268 284 33 43 chr9 21115161 21115253 -102960919 + RSINE1 SINE B4 18 108 -57 4 746 1131 105 0 0 chr9 21115290 21115443 -102960729 + B2_Mm2 SINE B2 6 158 -37 4 746 252 0 0 0 chr9 21115444 21115472 -102960700 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 4 746 438 108 0 0 chr9 21115557 21115622 -102960550 + (GGA)n Simple_repeat Simple_repeat 2 66 0 4 746 472 259 68 18 chr9 21115776 21115909 -102960263 - PB1 SINE Alu -16 131 2 4 746 506 54 14 0 chr9 21115993 21116067 -102960105 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 746 231 311 53 13 chr9 21116074 21116149 -102960023 - RSINE1 SINE B4 -72 93 16 4 746 441 194 228 74 chr9 21116151 21116340 -102959832 - ID_B1 SINE B4 -2 222 5 4 746 237 263 83 15 chr9 21116502 21116609 -102959563 - MIR SINE MIR -125 151 31 4 746 183 129 0 0 chr9 21116976 21117007 -102959165 + (CCCA)n Simple_repeat Simple_repeat 2 32 0 4 746 211 255 0 0 chr9 21117049 21117100 -102959072 + (CCCA)n Simple_repeat Simple_repeat 4 54 0 4 746 203 216 19 19 chr9 21117250 21117302 -102958870 + (TTG)n Simple_repeat Simple_repeat 3 54 0 4 746 484 170 150 0 chr9 21117308 21117408 -102958764 - PB1D9 SINE Alu -5 115 1 4 746 1238 28 14 0 chr9 21117447 21117592 -102958580 + B1_Mus2 SINE Alu 1 147 0 4 746 198 0 0 0 chr9 21117592 21117614 -102958558 + (A)n Simple_repeat Simple_repeat 1 22 0 4 746 296 222 311 0 chr9 21117633 21117723 -102958449 - B1F SINE Alu -31 118 1 4 746 233 189 113 0 chr9 21117761 21117814 -102958358 - PB1D10 SINE Alu -31 86 28 4 746 1601 43 0 0 chr9 21118294 21118479 -102957693 - B2_Mm1a SINE B2 -7 186 2 4 746 1160 88 0 0 chr9 21118486 21118634 -102957538 - B1_Mus1 SINE Alu 0 148 1 4 746 597 51 13 0 chr9 21118750 21118829 -102957343 + B2_Mm1t SINE B2 1 80 -113 4 746 595 249 29 75 chr9 21118850 21119024 -102957148 - ID_B1 SINE B4 -53 171 6 4 746 210 292 111 34 chr9 21119127 21119244 -102956928 - PB1 SINE Alu -1 126 1 4 746 516 274 62 25 chr9 21119244 21119322 -102956850 - ID SINE ID -137 87 4 4 746 345 145 0 0 chr9 21119467 21119529 -102956643 + (CATA)n Simple_repeat Simple_repeat 2 63 0 4 746 407 233 32 57 chr9 21119581 21119704 -102956468 + PB1D9 SINE Alu 1 120 0 4 746 326 284 0 13 chr9 21119762 21119837 -102956335 + RSINE1 SINE B4 59 132 -33 4 746 324 102 0 0 chr9 21120118 21120167 -102956005 + (CAGCC)n Simple_repeat Simple_repeat 5 53 0 4 746 880 138 72 0 chr9 21120551 21120689 -102955483 - B1_Mur4 SINE Alu -2 148 1 4 746 1127 68 18 7 chr9 21120707 21120863 -102955309 + B1_Mus2 SINE Alu 9 311 0 4 746 563 216 81 0 chr9 21120887 21120998 -102955174 - B1_Mur2 SINE Alu -13 136 17 4 746 458 35 0 0 chr9 21121001 21121058 -102955114 + B1_Mus2 SINE Alu 88 144 -3 4 746 432 0 0 0 chr9 21121058 21121106 -102955066 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 4 746 283 302 52 37 chr9 21121321 21121455 -102954717 + MIRb SINE MIR 21 156 -112 4 746 674 213 148 0 chr9 21121525 21121708 -102954464 + B3 SINE B2 3 212 -4 4 746 543 199 63 7 chr9 21121760 21121902 -102954270 - B3A SINE B2 -11 187 38 4 746 973 209 149 32 chr9 21121925 21122206 -102953966 + RLTR18-int LTR ERVK 4355 4668 -693 4 746 1281 34 0 0 chr9 21122218 21122364 -102953808 + B1_Mus2 SINE Alu 2 147 0 4 746 201 178 0 0 chr9 21122366 21122411 -102953761 + A-rich Low_complexity Low_complexity 1 45 0 4 746 2163 202 47 26 chr9 21122411 21122944 -102953228 + RLTR18-int LTR ERVK 4809 5352 -9 4 746 772 200 122 69 chr9 21122969 21123173 -102952999 + RLTR18B LTR ERVK 1 215 -297 4 746 195 129 0 0 chr9 21123323 21123354 -102952818 + (TCTCC)n Simple_repeat Simple_repeat 4 34 0 4 746 306 264 34 11 chr9 21123354 21123442 -102952730 - BC1_Mm scRNA scRNA -54 98 9 4 746 650 174 20 0 chr9 21123513 21123636 -102952536 - B1_Mus2 SINE Alu -8 140 1 4 746 275 219 197 102 chr9 21123636 21123650 -102952522 - B4 SINE B4 -74 218 69 4 746 225 0 0 0 chr9 21123650 21123675 -102952497 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 4 746 1061 89 0 40 chr9 21123675 21123827 -102952345 - B1_Mm SINE Alu 0 147 2 4 746 264 59 0 0 chr9 21123842 21123876 -102952296 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 4 746 1200 61 0 7 chr9 21123876 21124024 -102952148 - B1_Mm SINE Alu 0 147 1 4 746 869 168 14 95 chr9 21124035 21124245 -102951927 - B2_Mm2 SINE B2 -1 194 2 4 746 625 203 16 0 chr9 21124319 21124442 -102951730 - ID_B1 SINE B4 0 224 100 4 746 458 239 66 15 chr9 21124320 21124456 -102951716 - B1_Mus1 SINE Alu 0 148 6 4 746 494 242 113 0 chr9 21124463 21124587 -102951585 + B1_Mur2 SINE Alu 2 139 -10 4 746 369 0 0 0 chr9 21124587 21124628 -102951544 + (TAA)n Simple_repeat Simple_repeat 2 42 0 4 746 246 115 0 0 chr9 21124629 21124672 -102951500 - B1F2 SINE Alu -85 64 22 4 746 727 133 102 15 chr9 21124849 21124986 -102951186 + B1_Mur4 SINE Alu 2 150 0 4 746 185 319 58 0 chr9 21126194 21126263 -102949909 - L2 LINE L2 -2792 627 555 4 746 264 212 0 0 chr9 21127388 21127454 -102948718 + CT-rich Low_complexity Low_complexity 3 68 0 4 746 261 0 0 0 chr9 21127573 21127602 -102948570 + (T)n Simple_repeat Simple_repeat 1 29 0 4 746 1202 63 0 0 chr9 21127602 21127745 -102948427 - B1_Mus2 SINE Alu 0 147 5 4 746 211 171 0 28 chr9 21127747 21127783 -102948389 - PB1 SINE Alu -72 55 21 4 746 445 269 101 36 chr9 21127884 21128023 -102948149 - ID_B1 SINE B4 -28 196 49 4 746 441 208 20 20 chr9 21128202 21128300 -102947872 - B1_Mm SINE Alu -8 139 42 4 746 224 127 18 0 chr9 21128449 21128504 -102947668 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 4 746 1187 48 7 0 chr9 21128504 21128649 -102947523 - B1_Mus2 SINE Alu -1 146 1 4 746 582 248 28 28 chr9 21128654 21128795 -102947377 - ID_B1 SINE B4 -2 222 82 4 746 210 37 0 0 chr9 21128933 21128960 -102947212 + (CAGGG)n Simple_repeat Simple_repeat 3 29 0 4 746 348 83 0 0 chr9 21129138 21129186 -102946986 + (CTAA)n Simple_repeat Simple_repeat 1 48 0 4 746 720 211 58 67 chr9 21129202 21129425 -102946747 + ID_B1 SINE B4 4 224 0 4 746 389 266 51 46 chr9 21129451 21129648 -102946524 + B3A SINE B2 1 198 0 5 746 486 232 10 0 chr9 21129648 21129747 -102946425 + B1_Mur2 SINE Alu 2 101 -48 5 746 1145 82 7 0 chr9 21129782 21129928 -102946244 - B1_Mm SINE Alu 0 147 1 5 746 413 220 107 78 chr9 21129959 21129992 -102946180 - ID_B1 SINE B4 -46 246 121 5 746 689 114 43 4 chr9 21129992 21130113 -102946059 - B1_Mur3 SINE Alu -1 146 9 5 746 238 196 71 0 chr9 21130161 21130217 -102945955 - RMER15 LTR ERVL -109 466 407 5 746 444 19 0 0 chr9 21130303 21130356 -102945816 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 746 1086 259 102 98 chr9 21130569 21130712 -102945460 - RMER13A LTR ERVK -379 481 343 5 746 1498 53 26 10 chr9 21130712 21130904 -102945268 - B2_Mm2 SINE B2 0 195 1 5 746 1086 259 102 98 chr9 21130904 21131239 -102944933 - RMER13A LTR ERVK -518 342 1 5 746 1180 56 21 0 chr9 21131329 21131473 -102944699 + B1_Mus1 SINE Alu 2 148 0 5 746 907 110 7 40 chr9 21131499 21131651 -102944521 - B1_Mur3 SINE Alu -1 148 2 5 746 274 294 57 35 chr9 21131691 21131832 -102944340 - RSINE1 SINE B4 -10 155 12 5 746 726 137 128 18 chr9 21131980 21132144 -102944028 - B3 SINE B2 -3 213 32 5 746 858 219 73 0 chr9 21132167 21132359 -102943813 + B3 SINE B2 7 212 -4 5 746 588 272 53 26 chr9 21132757 21132946 -102943226 - ID_B1 SINE B4 -9 215 22 5 746 1461 73 0 30 chr9 21132989 21133188 -102942984 - B2_Mm2 SINE B2 -2 193 1 5 746 855 156 22 0 chr9 21133202 21133337 -102942835 - B1_Mur2 SINE Alu -11 138 1 5 746 352 336 8 49 chr9 21133373 21133495 -102942677 - B1F SINE Alu -32 117 1 5 746 246 32 0 0 chr9 21133747 21133778 -102942394 + (C)n Simple_repeat Simple_repeat 1 31 0 5 746 351 0 0 0 chr9 21133871 21133910 -102942262 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 746 437 194 0 9 chr9 21133910 21133931 -102942241 + polypyrimidine Low_complexity Low_complexity 90 109 0 5 746 1235 34 7 0 chr9 21133931 21134077 -102942095 - B1_Mm SINE Alu 0 147 1 5 746 437 194 0 9 chr9 21134077 21134164 -102942008 + CT-rich Low_complexity Low_complexity 3 89 0 5 746 1154 68 13 13 chr9 21134175 21134325 -102941847 - B1_Mur4 SINE Alu 0 150 1 5 746 299 172 69 0 chr9 21134325 21134383 -102941789 - MTC LTR MaLR -359 62 1 5 746 407 247 32 0 chr9 21134378 21134471 -102941701 - ZP3AR Satellite Satellite -64 148 53 5 746 279 212 99 66 chr9 21134478 21134599 -102941573 - MTE2b LTR MaLR -56 323 199 5 746 234 292 21 82 chr9 21134604 21134701 -102941471 - PB1 SINE Alu -36 91 1 5 746 345 117 0 0 chr9 21135041 21135101 -102941071 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 746 384 22 0 0 chr9 21135101 21135145 -102941027 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 746 343 267 0 110 chr9 21135319 21135336 -102940836 + MT2B LTR ERVL 153 156 -445 5 746 647 215 96 0 chr9 21135336 21135471 -102940701 + B1_Mur2 SINE Alu 2 149 0 5 746 1411 54 43 0 chr9 21135496 21135682 -102940490 + B2_Mm2 SINE B2 2 195 0 5 746 1611 42 0 16 chr9 21135683 21135877 -102940295 + B2_Mm1a SINE B2 2 192 -1 5 746 862 109 7 42 chr9 21136084 21136227 -102939945 - B1_Mur4 SINE Alu -1 149 12 5 746 301 191 417 0 chr9 21136233 21136317 -102939855 - PB1D9 SINE Alu -1 119 1 5 746 2449 164 100 21 chr9 21136325 21136853 -102939319 - RMER15 LTR ERVL -2 573 4 5 746 662 188 39 8 chr9 21136920 21137049 -102939123 - B1_Mur3 SINE Alu -16 133 1 5 746 213 319 0 42 chr9 21137060 21137132 -102939040 - B4 SINE B4 -211 81 13 5 746 278 323 109 5 chr9 21137532 21137601 -102938571 - B3 SINE B2 -3 213 25 5 746 652 231 0 0 chr9 21137601 21137718 -102938454 - RSINE1 SINE B4 -40 125 9 5 746 1194 92 18 0 chr9 21138409 21138572 -102937600 - B2_Mm2 SINE B2 -15 180 15 5 746 192 77 0 0 chr9 21138579 21138605 -102937567 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 746 1495 60 0 5 chr9 21138615 21138800 -102937372 + B2_Mm2 SINE B2 1 184 -11 5 746 704 127 42 0 chr9 21138807 21138925 -102937247 - B1F2 SINE Alu -15 134 12 5 746 348 226 65 108 chr9 21138819 21138958 -102937214 - MT2B LTR ERVL -323 278 146 5 746 27 0 0 0 chr9 21138991 21139018 -102937154 + AT_rich Low_complexity Low_complexity 1 27 0 5 746 1604 21 11 21 chr9 21139024 21139215 -102936957 + B2_Mm1t SINE B2 1 189 -4 5 746 735 214 95 20 chr9 21139224 21139424 -102936748 - B3 SINE B2 0 216 2 5 746 359 265 16 41 chr9 21139442 21139564 -102936608 - PB1D7 SINE Alu 0 120 2 5 746 377 194 131 10 chr9 21140240 21140339 -102935833 - ZP3AR Satellite Satellite -74 138 28 5 746 1012 67 96 0 chr9 21140451 21140586 -102935586 + B1_Mus1 SINE Alu 1 148 0 5 746 192 77 0 0 chr9 21140591 21140617 -102935555 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 5 746 1503 55 38 0 chr9 21140627 21140810 -102935362 + B2_Mm2 SINE B2 2 191 -4 5 746 4066 111 146 6 chr9 21140913 21141558 -102934614 - RMER19A LTR ERVK 0 737 3 5 746 513 0 0 0 chr9 21141716 21141773 -102934399 + (CATA)n Simple_repeat Simple_repeat 4 60 0 5 746 397 258 0 0 chr9 21141797 21141886 -102934286 + ID_B1 SINE B4 118 206 -18 5 746 216 0 0 0 chr9 21141886 21141910 -102934262 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 5 746 339 25 0 0 chr9 21143195 21143235 -102932937 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 746 608 147 19 19 chr9 21143426 21143530 -102932642 - B1_Mur2 SINE Alu -1 148 45 5 746 242 224 0 191 chr9 21143460 21143554 -102932618 - RLTR25A LTR ERVK -520 583 508 5 746 243 167 122 20 chr9 21143589 21143638 -102932534 + ID_B1 SINE B4 103 156 -68 5 746 323 207 207 0 chr9 21143785 21143872 -102932300 - B3 SINE B2 -6 210 106 5 746 557 268 6 44 chr9 21143876 21144036 -102932136 - B3 SINE B2 -23 193 40 5 746 513 93 0 39 chr9 21144082 21144160 -102932012 - B1_Mur3 SINE Alu 0 149 75 5 746 856 224 48 0 chr9 21144253 21144418 -102931754 - B3 SINE B2 -6 210 38 5 746 245 280 32 152 chr9 21144409 21144452 -102931720 - B4A SINE B4 -21 271 152 5 746 730 177 13 72 chr9 21144452 21144604 -102931568 - B1_Mur3 SINE Alu 0 149 7 5 746 245 280 32 152 chr9 21144604 21144631 -102931541 - B4A SINE B4 -21 151 70 5 746 746 189 20 65 chr9 21144664 21144817 -102931355 - B1_Mus2 SINE Alu 0 147 2 5 746 671 155 206 31 chr9 21144866 21145026 -102931146 - B2_Mm2 SINE B2 -7 188 1 5 746 342 307 86 38 chr9 21145049 21145259 -102930913 + ID_B1 SINE B4 2 221 -3 5 746 331 299 142 0 chr9 21145264 21145398 -102930774 + RSINE1 SINE B4 4 156 -9 5 746 714 43 76 0 chr9 21145430 21145522 -102930650 + B2_Mm2 SINE B2 3 101 -94 5 746 483 118 0 0 chr9 21145538 21145623 -102930549 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 746 875 180 14 0 chr9 21145831 21145970 -102930202 + B1_Mur1 SINE Alu 3 143 -6 5 746 811 193 0 40 chr9 21145984 21146135 -102930037 + B1_Mur3 SINE Alu 2 146 -3 5 746 237 178 152 61 chr9 21146507 21146573 -102929599 - RSINE1 SINE B4 -82 83 12 5 746 232 310 99 0 chr9 21147898 21147969 -102928203 + ZP3AR Satellite Satellite 43 120 -92 5 746 351 250 60 0 chr9 21148157 21148257 -102927915 + MIR SINE MIR 45 150 -112 5 746 739 200 44 0 chr9 21148419 21148554 -102927618 - B1_Mur4 SINE Alu -9 141 1 5 746 445 298 81 0 chr9 21148590 21148714 -102927458 - RSINE1 SINE B4 -29 136 3 5 746 360 189 88 69 chr9 21148792 21148894 -102927278 + PB1D10 SINE Alu 7 110 -7 5 746 584 168 0 78 chr9 21148958 21149087 -102927085 - PB1D9 SINE Alu -1 119 1 5 746 313 199 45 57 chr9 21149145 21149234 -102926938 + B1F1 SINE Alu 70 144 -6 5 746 210 302 32 0 chr9 21150147 21150210 -102925962 - RSINE1 SINE B4 -38 127 63 5 746 225 258 52 41 chr9 21150537 21150634 -102925538 - B4A SINE B4 0 292 195 5 746 335 299 75 52 chr9 21150650 21150784 -102925388 - B4A SINE B4 -154 138 2 5 746 248 53 64 39 chr9 21150819 21150897 -102925275 + (TTTG)n Simple_repeat Simple_repeat 2 81 0 5 746 1295 20 7 0 chr9 21150898 21151044 -102925128 - B1_Mus1 SINE Alu 0 148 2 5 746 669 173 46 23 chr9 21151726 21151856 -102924316 + B1_Mur3 SINE Alu 1 133 -16 5 746 476 243 9 26 chr9 21151942 21152056 -102924116 - PB1D9 SINE Alu -5 115 4 5 746 251 208 19 19 chr9 21152068 21152122 -102924050 - ID_B1 SINE B4 -34 190 137 5 746 427 294 93 53 chr9 21153282 21153433 -102922739 - RSINE1 SINE B4 -6 159 3 5 746 47 44 0 0 chr9 21153433 21153501 -102922671 + AT_rich Low_complexity Low_complexity 1 68 0 5 746 924 135 7 0 chr9 21153577 21153725 -102922447 - B1_Mur4 SINE Alu -1 149 1 5 746 526 176 0 0 chr9 21153729 21153814 -102922358 - B1_Mm SINE Alu 0 147 63 5 746 729 201 14 36 chr9 21153817 21153956 -102922216 - B1_Mur1 SINE Alu 0 149 14 5 746 1137 204 0 50 chr9 21153970 21154192 -102921980 - B3 SINE B2 0 216 6 5 746 243 336 35 78 chr9 21154348 21154464 -102921708 + PB1D7 SINE Alu 10 120 0 5 746 308 122 732 0 chr9 21154487 21154569 -102921603 + B1_Mus1 SINE Alu 1 142 -6 5 746 490 270 55 12 chr9 21154669 21154834 -102921338 - B4A SINE B4 -113 179 8 5 746 289 312 21 0 chr9 21154828 21154921 -102921251 - B1F SINE Alu -21 128 34 6 746 1517 63 26 0 chr9 21154993 21155183 -102920989 + B2_Mm2 SINE B2 1 195 0 6 746 184 222 0 0 chr9 21155333 21155369 -102920803 - L2b LINE L2 -322 3053 3018 6 746 316 253 63 0 chr9 21155442 21155537 -102920635 + ID_B1 SINE B4 124 224 0 6 746 307 197 75 50 chr9 21155533 21155613 -102920559 + RLTR25B LTR ERVK 428 509 -519 6 746 886 28 0 0 chr9 21155548 21155656 -102920516 + B1_Mm SINE Alu 40 147 0 6 746 444 216 120 0 chr9 21155883 21156008 -102920164 + RSINE1 SINE B4 2 141 -24 6 746 225 305 156 37 chr9 21156166 21156275 -102919897 + B3A SINE B2 3 124 -74 6 746 234 0 0 0 chr9 21156372 21156398 -102919774 + (T)n Simple_repeat Simple_repeat 1 26 0 6 746 538 137 160 64 chr9 21156398 21156523 -102919649 - B1_Mur1 SINE Alu 0 149 13 6 746 883 259 20 0 chr9 21156531 21156728 -102919444 + B3 SINE B2 2 202 -14 6 746 604 255 35 3 chr9 21157659 21157840 -102918332 - ZP3AR Satellite Satellite -31 186 1 6 746 280 256 84 63 chr9 21157847 21157989 -102918183 - B1F SINE Alu 0 149 5 6 746 182 296 84 0 chr9 21159002 21159073 -102917099 - L3 LINE CR1 -3491 998 922 6 746 321 287 56 62 chr9 21159730 21159890 -102916282 - B3A SINE B2 -2 196 38 6 746 352 272 74 74 chr9 21159897 21160032 -102916140 - B3 SINE B2 -1 215 81 6 746 1235 62 0 0 chr9 21160196 21160342 -102915830 + B1_Mus1 SINE Alu 1 146 -2 6 746 607 287 49 0 chr9 21160355 21160519 -102915653 + B3A SINE B2 1 172 -26 6 746 478 149 0 54 chr9 21160532 21160624 -102915548 - B1_Mus2 SINE Alu -2 145 59 6 746 1208 68 0 0 chr9 21160630 21160777 -102915395 + B1_Mus2 SINE Alu 1 147 0 6 746 1399 87 0 21 chr9 21160797 21160986 -102915186 + B2_Mm1t SINE B2 4 188 -5 6 746 1198 75 0 0 chr9 21160990 21161136 -102915036 + B1_Mus2 SINE Alu 2 147 0 6 746 947 142 0 28 chr9 21161157 21161302 -102914870 + B1_Mur3 SINE Alu 1 141 -8 6 746 899 172 3 19 chr9 21161327 21161511 -102914661 + B3 SINE B2 2 175 -20 6 746 966 203 67 5 chr9 21161517 21161710 -102914462 - B3 SINE B2 -7 209 5 6 746 216 0 0 0 chr9 21161731 21161755 -102914417 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 746 234 0 0 0 chr9 21161775 21161801 -102914371 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 746 302 292 0 0 chr9 21161808 21161873 -102914299 - RSINE1 SINE B4 -89 76 12 6 746 848 239 36 88 chr9 21162075 21162270 -102913902 - ID_B1 SINE B4 -40 252 58 6 746 935 94 201 0 chr9 21162270 21162429 -102913743 + B2_Mm2 SINE B2 1 191 -4 6 746 848 237 35 88 chr9 21162429 21162487 -102913685 - ID SINE ID -166 58 7 6 746 632 262 30 50 chr9 21162513 21162714 -102913458 - B3A SINE B2 0 198 2 6 746 354 206 29 0 chr9 21162738 21162806 -102913366 - PB1D9 SINE Alu -9 111 42 6 746 1230 54 0 0 chr9 21162966 21163113 -102913059 - B1_Mus1 SINE Alu -1 147 1 6 746 888 109 62 0 chr9 21163195 21163323 -102912849 + B1_Mus1 SINE Alu 5 140 -8 6 746 1110 52 0 15 chr9 21163514 21163650 -102912522 - B1_Mm SINE Alu -12 135 2 6 746 257 238 0 0 chr9 21163676 21163718 -102912454 - B1_Mus2 SINE Alu -105 42 1 6 746 226 88 0 56 chr9 21163687 21163723 -102912449 - MT2C_Mm LTR ERVL -239 236 203 6 746 1232 177 238 19 chr9 21163766 21164077 -102912095 + RLTR30 LTR ERV1 1 379 0 6 746 197 65 0 31 chr9 21164330 21164362 -102911810 + (CTG)n Simple_repeat Simple_repeat 1 31 0 6 746 184 315 76 33 chr9 21164716 21164808 -102911364 - MIRm SINE MIR -177 99 4 6 746 2336 59 3 0 chr9 21164885 21165172 -102911000 - LTRIS_Mus LTR ERV1 -299 288 1 6 746 270 108 0 0 chr9 21166050 21166087 -102910085 - B2_Mm1t SINE B2 -31 162 126 6 746 526 117 105 11 chr9 21166063 21166158 -102910014 - B2_Mm2 SINE B2 -91 104 1 6 746 1318 234 42 160 chr9 21166164 21166503 -102909669 - RLTR11A2 LTR ERVK -6 522 228 6 746 1019 140 0 11 chr9 21166503 21166684 -102909488 + CT-rich Low_complexity Low_complexity 2 180 0 6 746 1318 231 37 166 chr9 21166684 21166918 -102909254 - RLTR11A2 LTR ERVK -300 227 6 6 746 593 198 91 82 chr9 21166922 21167142 -102909030 - MYSERV-int LTR ERVK 0 6550 6329 6 746 551 14 0 14 chr9 21167724 21167798 -102908374 - L1Md_F2 LINE L1 -10 6572 6500 6 746 276 79 0 0 chr9 21168155 21168193 -102907979 + B2_Mm2 SINE B2 1 38 -157 6 746 384 259 35 47 chr9 21168447 21168616 -102907556 + RLTR13D3 LTR ERVK 944 1072 -42 6 746 315 243 27 0 chr9 21168615 21168689 -102907483 + RLTR30 LTR ERV1 53 128 -251 6 746 375 138 35 0 chr9 21168693 21168751 -102907421 - B1_Mur4 SINE Alu -90 60 1 6 746 318 50 0 0 chr9 21168753 21168793 -102907379 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 6 746 1321 55 6 0 chr9 21168794 21168958 -102907214 - B2_Mm1a SINE B2 -14 179 15 6 746 1166 35 35 0 chr9 21168995 21169137 -102907035 + B1_Mus2 SINE Alu 1 147 0 6 746 504 196 50 0 chr9 21169205 21169320 -102906852 - PB1D9 SINE Alu 0 120 1 6 746 1140 140 11 0 chr9 21169334 21169513 -102906659 + B2_Mm1t SINE B2 2 182 -11 6 746 258 65 500 80 chr9 21169542 21169642 -102906530 + B2_Mm2 SINE B2 47 188 -7 6 746 341 331 98 0 chr9 21169644 21169777 -102906395 - B3A SINE B2 -2 196 51 6 746 263 303 94 68 chr9 21169955 21170072 -102906100 + PB1D9 SINE Alu 1 120 0 6 746 1100 65 0 0 chr9 21170075 21170213 -102905959 + B1_Mus1 SINE Alu 2 139 -9 6 746 324 120 0 0 chr9 21170236 21170286 -102905886 + (A)n Simple_repeat Simple_repeat 1 50 0 6 746 411 242 7 2 chr9 21170295 21170390 -102905782 + RSINE1 SINE B4 1 97 -195 6 746 644 281 101 9 chr9 21170537 21170756 -102905416 - B4A SINE B4 -12 280 42 6 746 221 214 195 35 chr9 21170737 21170813 -102905359 + RSINE1 SINE B4 52 142 -23 6 746 180 0 0 0 chr9 21170813 21170833 -102905339 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 746 299 45 0 22 chr9 21170851 21170897 -102905275 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 6 746 475 205 58 122 chr9 21170954 21171093 -102905079 + B3 SINE B2 81 210 -6 6 746 1153 62 7 0 chr9 21171483 21171629 -102904543 - B1_Mus1 SINE Alu 0 148 2 6 746 282 267 44 11 chr9 21171694 21171785 -102904387 + PB1D10 SINE Alu 24 117 0 6 746 186 103 0 0 chr9 21172340 21172369 -102903803 + (CCCG)n Simple_repeat Simple_repeat 2 30 0 6 746 1234 48 0 0 chr9 21173441 21173587 -102902585 - B1_Mm SINE Alu 0 147 2 6 746 311 258 161 0 chr9 21173936 21174029 -102902143 - PB1D10 SINE Alu -5 112 5 6 746 321 274 88 88 chr9 21174121 21174137 -102902035 - B1F SINE Alu 0 149 137 6 746 1325 75 31 41 chr9 21174137 21174331 -102901841 - B2_Mm1t SINE B2 0 193 2 6 746 425 258 14 68 chr9 21174331 21174462 -102901710 - PB1D9 SINE Alu -13 136 2 6 746 276 149 0 0 chr9 21174579 21174626 -102901546 + (T)n Simple_repeat Simple_repeat 1 47 0 6 746 26 0 0 0 chr9 21174663 21174689 -102901483 + AT_rich Low_complexity Low_complexity 1 26 0 6 746 1226 68 0 0 chr9 21174689 21174837 -102901335 - B1_Mus1 SINE Alu 0 148 1 6 746 521 177 73 0 chr9 21175042 21175138 -102901034 - B1_Mm SINE Alu -43 104 2 6 746 207 0 0 0 chr9 21175141 21175164 -102901008 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 6 746 246 154 0 0 chr9 21175681 21175703 -102900469 + T-rich Low_complexity Low_complexity 31 52 0 6 746 1675 36 0 0 chr9 21175703 21175895 -102900277 - B2_Mm1a SINE B2 0 193 2 6 746 246 154 0 0 chr9 21175895 21175924 -102900248 + T-rich Low_complexity Low_complexity 2 30 0 6 746 1193 61 0 0 chr9 21175924 21176071 -102900101 - B1_Mus1 SINE Alu 0 148 2 6 746 817 195 69 35 chr9 21176074 21176276 -102899896 - B3 SINE B2 -7 209 1 6 746 534 240 83 39 chr9 21176366 21176522 -102899650 + RSINE1 SINE B4 3 165 0 6 746 802 131 36 7 chr9 21176720 21176858 -102899314 - B1_Mur4 SINE Alu 0 150 9 6 746 284 311 124 67 chr9 21176885 21177078 -102899094 - B3A SINE B2 -4 212 9 6 746 240 215 252 0 chr9 21177117 21177224 -102898948 - B1F2 SINE Alu -5 144 11 6 746 366 181 0 26 chr9 21177229 21177315 -102898857 - B1_Mur2 SINE Alu -21 128 52 6 746 273 289 94 24 chr9 21177377 21177462 -102898710 - B3 SINE B2 -46 170 80 6 746 840 153 69 0 chr9 21177543 21177674 -102898498 - B1_Mur4 SINE Alu -9 141 2 6 746 1400 81 16 0 chr9 21178101 21178286 -102897886 - B2_Mm2 SINE B2 -6 189 2 6 746 1629 27 21 0 chr9 21178327 21178515 -102897657 + B2_Mm1a SINE B2 2 193 0 6 746 330 189 80 13 chr9 21178608 21178683 -102897489 + PB1D7 SINE Alu 41 120 0 6 746 481 267 51 17 chr9 21178694 21178812 -102897360 + B1_Mur1 SINE Alu 14 135 -14 6 746 258 81 0 0 chr9 21178831 21178868 -102897304 + (A)n Simple_repeat Simple_repeat 1 37 0 6 746 727 247 25 133 chr9 21178880 21179076 -102897096 + B3A SINE B2 20 198 0 6 746 1311 112 5 5 chr9 21179086 21179274 -102896898 + B2_Mm2 SINE B2 2 189 -6 6 746 235 337 56 34 chr9 21179320 21179409 -102896763 + RSINE1 SINE B4 69 159 -6 6 746 284 103 0 0 chr9 21179436 21179475 -102896697 - B1_Mus2 SINE Alu -108 39 1 6 746 207 0 0 0 chr9 21179487 21179510 -102896662 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 746 1185 50 0 0 chr9 21179513 21179653 -102896519 - B1_Mm SINE Alu -6 141 2 6 746 705 306 117 41 chr9 21180019 21180285 -102895887 - B4A SINE B4 0 292 7 7 746 216 0 0 0 chr9 21180442 21180466 -102895706 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7 746 1342 74 26 21 chr9 21180466 21180647 -102895525 - B2_Mm2 SINE B2 -12 183 1 7 746 1105 29 49 21 chr9 21180759 21180902 -102895270 + B1_Mm SINE Alu 1 147 0 7 746 186 133 0 0 chr9 21180906 21180936 -102895236 + (A)n Simple_repeat Simple_repeat 1 30 0 7 746 563 220 37 0 chr9 21180997 21181106 -102895066 + PB1D9 SINE Alu 5 117 -3 7 746 851 206 68 11 chr9 21181500 21181691 -102894481 - B3 SINE B2 -14 202 1 7 746 221 57 0 28 chr9 21181700 21181736 -102894436 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 746 520 261 84 0 chr9 21181812 21181931 -102894241 - B1_Mur1 SINE Alu -19 130 2 7 746 306 211 0 0 chr9 21181932 21181989 -102894183 - B3A SINE B2 -85 113 57 7 746 292 299 61 10 chr9 21181996 21182094 -102894078 - PB1D10 SINE Alu -3 114 12 7 746 592 247 26 70 chr9 21182288 21182487 -102893685 - B3 SINE B2 0 216 20 7 746 968 239 37 24 chr9 21182903 21183289 -102892883 + BGLII_B LTR ERVK 1 431 -10 7 746 344 299 28 72 chr9 21183950 21184130 -102892042 - ID_B1 SINE B4 -52 172 1 7 746 210 91 0 0 chr9 21184459 21184492 -102891680 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 746 919 259 56 26 chr9 21184519 21184785 -102891387 - B4A SINE B4 -14 278 5 7 746 286 302 208 51 chr9 21184846 21185024 -102891148 - B4A SINE B4 0 292 87 7 746 204 40 0 0 chr9 21185130 21185155 -102891017 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7 746 1124 53 0 0 chr9 21185155 21185288 -102890884 - B1_Mus2 SINE Alu -13 134 2 7 746 1019 179 62 0 chr9 21185373 21185568 -102890604 - B3 SINE B2 -9 207 1 7 746 393 287 87 65 chr9 21185852 21185990 -102890182 - RSINE1 SINE B4 -14 151 11 7 746 313 221 200 0 chr9 21186019 21186114 -102890058 - PB1D10 SINE Alu -1 116 3 7 746 275 284 16 0 chr9 21186124 21186227 -102889945 - B3A SINE B2 0 216 111 7 746 723 50 59 0 chr9 21186224 21186325 -102889847 + B2_Mm2 SINE B2 83 189 -6 7 746 280 293 11 89 chr9 21186332 21186422 -102889750 + PB1D10 SINE Alu 1 83 -34 7 746 1720 21 0 0 chr9 21186470 21186662 -102889510 - B2_Mm1a SINE B2 0 193 2 7 746 789 94 125 8 chr9 21186664 21186792 -102889380 - B1_Mus1 SINE Alu -1 147 5 7 746 229 225 22 111 chr9 21186822 21186912 -102889260 + ID4 SINE ID 2 83 0 7 746 713 180 15 23 chr9 21187144 21187275 -102888897 - B1_Mur1 SINE Alu -1 148 19 7 746 264 289 10 91 chr9 21187186 21187285 -102888887 - MT2B LTR ERVL -338 263 173 7 746 198 0 0 0 chr9 21187308 21187330 -102888842 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 746 374 295 18 37 chr9 21187330 21187439 -102888733 - B3A SINE B2 -44 154 48 7 746 459 243 55 146 chr9 21187449 21187613 -102888559 - B1_Mur3 SINE Alu 0 149 1 7 746 1425 62 22 0 chr9 21187652 21187830 -102888342 - B2_Mm2 SINE B2 -11 184 3 7 746 1082 98 0 0 chr9 21187838 21187981 -102888191 - B1_Mus2 SINE Alu 0 147 5 7 746 339 25 0 0 chr9 21188028 21188068 -102888104 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 746 506 241 9 44 chr9 21188107 21188220 -102887952 - B3A SINE B2 -88 110 2 7 746 247 289 227 0 chr9 21188232 21188329 -102887843 - ID_B1 SINE B4 -8 216 98 7 746 1523 281 44 52 chr9 21189248 21189902 -102886270 - Lx8 LINE L1 0 7473 6825 7 746 330 247 186 39 chr9 21190039 21190195 -102885977 - B4A SINE B4 -8 284 106 7 746 225 0 0 0 chr9 21190385 21190410 -102885762 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 7 746 639 198 16 16 chr9 21190416 21190539 -102885633 - B1_Mm SINE Alu -20 127 5 7 746 305 214 33 33 chr9 21190593 21190685 -102885487 - B1_Mur1 SINE Alu -32 117 26 7 746 445 323 0 31 chr9 21190778 21190906 -102885266 - RSINE1 SINE B4 -2 163 40 7 746 231 285 43 115 chr9 21190910 21191049 -102885123 - B4 SINE B4 -148 144 16 7 746 267 230 0 47 chr9 21190988 21191052 -102885120 - tRNA-Ala-GCY_ tRNA tRNA -8 67 7 7 746 422 296 8 67 chr9 21191172 21191306 -102884866 + ID_B1 SINE B4 93 218 -6 7 746 663 306 57 97 chr9 21191315 21191615 -102884557 + B4A SINE B4 2 289 -3 7 746 224 315 27 14 chr9 21191699 21191773 -102884399 + B1_Mus1 SINE Alu 1 75 -73 7 746 870 150 0 0 chr9 21192384 21192517 -102883655 + Tigger7 DNA MER2_type 1 133 -2358 7 746 1021 191 209 14 chr9 21192509 21192796 -102883376 + Tigger7 DNA MER2_type 2149 2491 0 7 746 391 78 31 0 chr9 21193232 21193296 -102882876 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 746 377 261 32 11 chr9 21193348 21193441 -102882731 - ID_B1 SINE B4 -6 218 124 7 746 263 98 0 38 chr9 21193459 21193512 -102882660 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 7 746 669 221 44 0 chr9 21193514 21193650 -102882522 - B1F1 SINE Alu 0 149 8 7 746 424 242 62 21 chr9 21194305 21194402 -102881770 + PB1D10 SINE Alu 5 105 -12 7 746 350 252 100 10 chr9 21194458 21194558 -102881614 - PB1D10 SINE Alu -8 109 1 7 746 207 0 0 0 chr9 21194924 21194947 -102881225 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 746 1140 54 0 58 chr9 21194947 21195092 -102881080 - B1_Mus2 SINE Alu -8 139 1 7 746 1582 37 11 0 chr9 21195289 21195479 -102880693 - B2_Mm1t SINE B2 0 193 2 7 746 376 237 63 21 chr9 21195542 21195637 -102880535 + MER20 DNA MER1_type 118 216 -3 7 746 356 229 97 44 chr9 21196078 21196192 -102879980 - PB1D7 SINE Alu 0 120 1 7 746 350 266 75 0 chr9 21196340 21196434 -102879738 - PB1 SINE Alu -18 109 9 7 746 230 278 68 14 chr9 21196458 21196531 -102879641 - PB1D10 SINE Alu -10 107 31 7 746 268 43 21 21 chr9 21197759 21197806 -102878366 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 7 746 226 256 35 103 chr9 21198984 21199071 -102877101 + MER58B DNA MER1_type 10 90 -251 7 746 180 0 0 0 chr9 21200803 21200823 -102875349 + (TTCC)n Simple_repeat Simple_repeat 4 23 0 7 746 434 162 130 28 chr9 21200950 21201058 -102875114 - PB1D9 SINE Alu -1 119 1 7 746 25 0 0 28 chr9 21201058 21201073 -102875099 + AT_rich Low_complexity Low_complexity 1 15 0 7 746 1077 45 82 0 chr9 21201073 21201207 -102874965 + B1_Mus2 SINE Alu 3 147 0 7 746 25 0 0 28 chr9 21201207 21201227 -102874945 + AT_rich Low_complexity Low_complexity 1 20 0 7 746 267 220 148 43 chr9 21201249 21201346 -102874826 - B4 SINE B4 0 292 201 7 746 279 311 67 22 chr9 21201427 21201562 -102874610 - B4A SINE B4 -150 142 2 7 746 226 267 0 39 chr9 21201570 21201648 -102874524 - B1_Mur3 SINE Alu -4 145 71 7 746 258 330 23 92 chr9 21201681 21201811 -102874361 + PB1D7 SINE Alu 10 130 -17 7 746 508 259 9 9 chr9 21202872 21202981 -102873191 - B3 SINE B2 -94 122 14 7 746 446 318 43 74 chr9 21203074 21203237 -102872935 - RSINE1 SINE B4 -6 159 2 7 746 25 0 0 0 chr9 21206098 21206123 -102870049 + AT_rich Low_complexity Low_complexity 1 25 0 7 746 448 202 0 128 chr9 21208808 21208910 -102867262 - B1_Mur3 SINE Alu -54 95 7 7 746 230 297 0 179 chr9 21208910 21208931 -102867241 - ID_B1 SINE B4 -51 173 73 7 746 331 298 7 121 chr9 21209913 21210054 -102866118 - B1_Mur3 SINE Alu -22 127 3 7 746 312 176 0 105 chr9 21209990 21210066 -102866106 - ID_B1 SINE B4 -84 140 73 7 746 1217 56 0 0 chr9 21211894 21212038 -102864134 - B1_Mus2 SINE Alu -1 146 3 7 746 260 242 81 0 chr9 21213131 21213193 -102862979 + B4 SINE B4 111 177 -115 7 746 646 145 0 264 chr9 21213222 21213419 -102862753 + B1_Mur3 SINE Alu 2 146 -3 7 746 347 233 86 32 chr9 21213468 21213561 -102862611 + B1F SINE Alu 47 144 -5 7 746 338 313 25 51 chr9 21213590 21213607 -102862565 + ID_B1 SINE B4 68 106 -118 7 746 343 200 21 105 chr9 21213607 21213702 -102862470 + MT2B LTR ERVL 169 255 -346 7 746 686 174 7 36 chr9 21213617 21213754 -102862418 + B1_Mur3 SINE Alu 17 149 0 7 746 338 313 25 51 chr9 21213702 21213748 -102862424 + ID_B1 SINE B4 107 221 -3 7 746 271 296 136 0 chr9 21213746 21213827 -102862345 + ID_B1 SINE B4 130 221 -3 7 746 250 189 74 19 chr9 21213857 21213911 -102862261 + B3 SINE B2 59 115 -101 7 746 351 247 133 11 chr9 21214004 21214094 -102862078 + RSINE1 SINE B4 49 149 -16 7 746 347 273 136 65 chr9 21214147 21214331 -102861841 + B4A SINE B4 90 286 -6 7 746 463 209 192 32 chr9 21214874 21215049 -102861123 - B3 SINE B2 -6 210 20 7 746 1149 111 78 0 chr9 21215056 21215074 -102861098 - B2_Mm2 SINE B2 0 195 174 7 746 1286 20 7 0 chr9 21215074 21215220 -102860952 - B1_Mus2 SINE Alu 0 147 1 7 746 1149 111 78 0 chr9 21215220 21215381 -102860791 - B2_Mm2 SINE B2 -22 173 3 7 746 662 129 410 0 chr9 21215400 21215539 -102860633 - B3 SINE B2 -9 207 12 7 746 591 194 24 23 chr9 21215545 21215688 -102860484 - PB1D9 SINE Alu 0 149 6 7 746 434 235 202 0 chr9 21215702 21215821 -102860351 - B1_Mur2 SINE Alu -6 143 1 7 746 434 274 66 15 chr9 21215841 21215978 -102860194 - B1F SINE Alu -5 144 1 7 746 231 324 99 0 chr9 21216067 21216138 -102860034 - RSINE1 SINE B4 -85 80 3 7 746 1281 34 0 0 chr9 21217055 21217202 -102858970 + B1_Mus2 SINE Alu 1 147 0 7 746 189 107 0 0 chr9 21217202 21217230 -102858942 + (A)n Simple_repeat Simple_repeat 1 28 0 7 746 555 210 40 92 chr9 21217332 21217484 -102858688 + B4 SINE B4 76 219 -73 8 746 1084 52 0 7 chr9 21217354 21217491 -102858681 + B1_Mus1 SINE Alu 12 147 -1 8 746 288 284 92 84 chr9 21217511 21217630 -102858542 + PB1D7 SINE Alu 1 120 0 8 746 656 199 13 64 chr9 21217779 21217935 -102858237 - B1_Mur1 SINE Alu -1 148 1 8 746 1584 31 0 25 chr9 21218044 21218241 -102857931 - B2_Mm1a SINE B2 -1 192 1 8 746 671 297 56 19 chr9 21218249 21218462 -102857710 - ID_B1 SINE B4 -2 222 2 8 746 415 185 141 0 chr9 21218716 21218808 -102857364 - MTD LTR MaLR -20 399 295 8 746 675 257 131 112 chr9 21219117 21219308 -102856864 - MTD LTR MaLR -15 404 202 8 746 632 258 57 31 chr9 21219308 21219500 -102856672 - B3A SINE B2 0 198 2 8 746 675 257 131 112 chr9 21219500 21219575 -102856597 - MTD LTR MaLR -218 201 133 8 746 197 65 0 31 chr9 21219683 21219715 -102856457 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 8 746 210 286 14 41 chr9 21219741 21219814 -102856358 - ID4_ SINE ID -12 71 1 8 746 233 207 69 0 chr9 21219963 21220021 -102856151 - ID_B1 SINE B4 -20 204 143 8 746 1362 90 11 0 chr9 21220030 21220219 -102855953 - B2_Mm1t SINE B2 -1 192 2 8 746 333 269 144 66 chr9 21220287 21220454 -102855718 - RMER10B LTR ERVL -2 396 217 8 746 383 289 61 9 chr9 21220609 21220724 -102855448 - B1_Mus2 SINE Alu -26 121 1 8 746 657 212 176 0 chr9 21220731 21220896 -102855276 - B3 SINE B2 0 216 23 8 746 1113 70 21 7 chr9 21220937 21221082 -102855090 - B1_Mm SINE Alu 0 147 1 8 746 502 292 13 34 chr9 21221083 21221232 -102854940 - ID_B1 SINE B4 -69 155 10 8 746 322 143 0 0 chr9 21221299 21221348 -102854824 - RSINE1 SINE B4 -50 115 67 8 746 210 37 0 0 chr9 21222009 21222036 -102854136 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 8 746 183 80 0 0 chr9 21222054 21222079 -102854093 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 8 746 399 211 199 22 chr9 21222083 21222107 -102854065 - RSINE1 SINE B4 -3 162 139 8 746 204 40 0 0 chr9 21222107 21222132 -102854040 + (CATG)n Simple_repeat Simple_repeat 4 28 0 8 746 399 211 199 22 chr9 21222132 21222193 -102853979 - RSINE1 SINE B4 -27 138 72 8 746 325 0 0 43 chr9 21222193 21222240 -102853932 + (GGGTG)n Simple_repeat Simple_repeat 3 47 0 8 746 399 211 199 22 chr9 21222240 21222289 -102853883 - RSINE1 SINE B4 -94 71 5 8 746 622 237 95 13 chr9 21222308 21222466 -102853706 - ID_B1 SINE B4 -10 214 44 8 746 304 244 21 32 chr9 21222493 21222586 -102853586 - PB1D10 SINE Alu -25 92 1 8 746 402 71 0 116 chr9 21223114 21223421 -102852751 + GA-rich Low_complexity Low_complexity 1 271 0 8 746 302 78 0 122 chr9 21223443 21223648 -102852524 + GA-rich Low_complexity Low_complexity 1 180 0 8 746 290 280 129 10 chr9 21224939 21225040 -102851132 + B1F2 SINE Alu 37 149 0 8 746 1134 106 6 0 chr9 21225270 21225440 -102850732 - B2_Mm2 SINE B2 -23 172 2 8 746 613 216 29 29 chr9 21225870 21226008 -102850164 - B1_Mur1 SINE Alu -1 148 11 8 746 317 250 169 15 chr9 21226016 21226146 -102850026 - ID_B1 SINE B4 -46 178 29 8 746 208 0 30 30 chr9 21226458 21226491 -102849681 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 8 746 25 51 0 0 chr9 21226634 21226673 -102849499 + AT_rich Low_complexity Low_complexity 1 39 0 8 746 306 295 112 1 chr9 21226680 21226811 -102849361 + B1F SINE Alu 3 146 -3 8 746 332 215 236 27 chr9 21226889 21226999 -102849173 + B1F SINE Alu 3 135 -14 8 746 253 274 0 16 chr9 21227243 21227306 -102848866 + B4A SINE B4 64 125 -167 8 746 554 266 109 11 chr9 21227454 21227629 -102848543 + B3A SINE B2 1 192 -6 8 746 700 273 38 28 chr9 21227629 21227840 -102848332 + B3 SINE B2 1 213 -3 8 746 494 238 169 53 chr9 21227842 21228017 -102848155 + B3 SINE B2 1 185 -10 8 746 667 249 70 43 chr9 21228063 21228248 -102847924 - B3 SINE B2 -4 194 5 8 746 294 67 83 0 chr9 21228451 21228511 -102847661 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 8 746 1166 68 7 0 chr9 21228511 21228657 -102847515 - B1_Mus2 SINE Alu 0 147 1 8 746 218 260 49 8 chr9 21228845 21228927 -102847245 + B1F1 SINE Alu 11 93 -27 8 746 279 0 0 0 chr9 21230783 21230814 -102845358 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 746 247 338 88 22 chr9 21230818 21230954 -102845218 - RSINE1 SINE B4 -17 148 4 8 746 253 182 0 18 chr9 21230954 21231008 -102845164 - B4A SINE B4 -61 231 179 8 746 342 0 0 0 chr9 21231017 21231055 -102845117 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 746 297 0 0 0 chr9 21231055 21231087 -102845085 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 746 298 224 0 82 chr9 21231087 21231174 -102844998 - B4A SINE B4 -98 194 116 8 746 192 40 0 0 chr9 21231175 21231200 -102844972 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 746 470 184 30 30 chr9 21231228 21231329 -102844843 + B1F2 SINE Alu 45 145 -4 8 746 361 247 10 20 chr9 21231396 21231495 -102844677 + PB1D10 SINE Alu 20 117 0 8 746 278 274 0 14 chr9 21231509 21231583 -102844589 + ID4_ SINE ID 2 74 -9 8 746 264 122 0 0 chr9 21231703 21231744 -102844428 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 8 746 730 190 34 27 chr9 21231744 21231890 -102844282 - B1_Mus2 SINE Alu 0 147 1 8 746 477 250 19 0 chr9 21231901 21232009 -102844163 - PB1D9 SINE Alu -8 112 3 8 746 24 0 0 0 chr9 21232032 21232056 -102844116 + AT_rich Low_complexity Low_complexity 1 24 0 8 746 504 250 35 35 chr9 21232057 21232198 -102843974 - B1F SINE Alu -1 148 8 8 746 582 278 132 0 chr9 21232767 21232972 -102843200 - B4 SINE B4 -1 291 60 8 746 686 269 6 0 chr9 21232976 21233132 -102843040 - ID_B1 SINE B4 -35 189 33 8 747 477 257 18 0 chr9 21233669 21233778 -102842394 + RSINE1 SINE B4 4 114 -51 8 747 486 201 249 23 chr9 21233871 21234044 -102842128 + ID_B1 SINE B4 12 223 -1 8 747 537 83 0 0 chr9 21234119 21234203 -102841969 + (TG)n Simple_repeat Simple_repeat 2 85 0 8 747 194 292 55 14 chr9 21234437 21234510 -102841662 - L2a LINE L2 -347 3079 3004 8 747 573 230 50 44 chr9 21234737 21234896 -102841276 - RSINE1 SINE B4 0 165 6 8 747 894 152 34 20 chr9 21234922 21235070 -102841102 - B1_Mur4 SINE Alu 0 150 1 8 747 235 303 55 9 chr9 21235074 21235184 -102840988 - PB1D10 SINE Alu 0 117 3 8 747 180 0 0 0 chr9 21235635 21235655 -102840517 + (TC)n Simple_repeat Simple_repeat 2 21 0 8 747 376 216 360 0 chr9 21235660 21235785 -102840387 - B3 SINE B2 -30 186 17 8 747 749 230 64 20 chr9 21235805 21236009 -102840163 - ID_B1 SINE B4 -4 220 8 8 747 431 262 58 0 chr9 21236656 21236759 -102839413 + PB1D7 SINE Alu 1 109 -11 8 747 183 80 0 0 chr9 21236761 21236786 -102839386 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 747 458 205 33 33 chr9 21236814 21236935 -102839237 + ID_B1 SINE B4 104 224 0 8 747 424 285 179 21 chr9 21237035 21237275 -102838897 - B4A SINE B4 0 292 15 8 747 249 140 0 0 chr9 21237316 21237337 -102838835 + (T)n Simple_repeat Simple_repeat 1 21 0 8 747 1209 68 0 0 chr9 21237337 21237485 -102838687 - B1_Mus1 SINE Alu 0 148 1 8 747 249 140 0 0 chr9 21237485 21237513 -102838659 + (T)n Simple_repeat Simple_repeat 1 28 0 8 747 730 193 206 22 chr9 21237517 21237697 -102838475 - B3 SINE B2 -2 214 2 8 747 443 290 74 74 chr9 21238635 21238721 -102837451 - ID_B1 SINE B4 -6 218 146 8 747 1441 70 21 0 chr9 21238721 21238907 -102837265 + B2_Mm1a SINE B2 1 190 -3 8 747 443 290 74 74 chr9 21238907 21239036 -102837136 - ID_B1 SINE B4 -79 145 3 8 747 854 176 126 11 chr9 21239147 21239337 -102836835 - B3 SINE B2 -4 212 1 8 747 1690 21 0 0 chr9 21239458 21239647 -102836525 - B2_Mm1a SINE B2 0 193 5 8 747 384 303 18 27 chr9 21239733 21239845 -102836327 - PB1D10 SINE Alu -1 116 6 8 747 313 298 78 68 chr9 21240168 21240204 -102835968 + CYRA11_Mm Unknown Y-chromosome 186 354 -263 8 747 971 148 6 6 chr9 21240204 21240367 -102835805 - URR1A DNA MER1_type -63 163 1 8 747 280 235 74 0 chr9 21240426 21240507 -102835665 - ID_B1 SINE B4 -45 179 93 8 747 220 331 109 8 chr9 21241060 21241188 -102834984 - B1_Mus2 SINE Alu -6 141 1 8 747 415 284 87 60 chr9 21241188 21241227 -102834945 - ID_B1 SINE B4 -131 93 51 8 747 543 183 104 40 chr9 21241284 21241409 -102834763 - B1_Mus2 SINE Alu 0 147 15 8 747 220 301 55 64 chr9 21241333 21241443 -102834729 - B4A SINE B4 -116 176 68 8 747 489 200 30 10 chr9 21241441 21241542 -102834630 + RSINE1 SINE B4 16 118 -47 8 747 231 301 0 0 chr9 21241958 21242031 -102834141 - L1MD3 LINE L1 -542 7453 7381 8 747 430 317 141 24 chr9 21242073 21242322 -102833850 - B4A SINE B4 0 292 15 8 747 300 250 26 0 chr9 21242352 21242428 -102833744 - ID4 SINE ID 0 83 6 8 747 897 274 38 0 chr9 21242390 21242679 -102833493 - ZP3AR Satellite Satellite -21 300 1 8 747 203 183 22 89 chr9 21242976 21243066 -102833106 + T-rich Low_complexity Low_complexity 6 89 0 8 747 1166 62 7 0 chr9 21243066 21243211 -102832961 - B1_Mus2 SINE Alu 0 147 2 8 747 418 257 168 0 chr9 21243388 21243501 -102832671 - B1_Mur2 SINE Alu -17 132 1 8 747 704 308 21 5 chr9 21243653 21243839 -102832333 - ID_B1 SINE B4 -31 193 5 8 747 385 234 20 50 chr9 21244289 21244405 -102831767 - B1_Mur2 SINE Alu 0 120 2 8 747 375 178 0 0 chr9 21244435 21244536 -102831636 + (TG)n Simple_repeat Simple_repeat 1 101 0 8 747 239 300 0 12 chr9 21244537 21244618 -102831554 - RSINE1 SINE B4 -1 164 85 8 747 235 256 71 79 chr9 21245166 21245293 -102830879 + YREP_Mm Unknown Unknown 167 292 -1520 9 747 764 226 70 5 chr9 21245186 21245373 -102830799 - ID_B1 SINE B4 -5 219 21 9 747 262 280 165 41 chr9 21245600 21245842 -102830330 + L1MB7 LINE L1 5881 6152 -32 9 747 246 183 97 32 chr9 21245963 21246025 -102830147 + PB1D7 SINE Alu 48 113 -7 9 747 213 39 0 0 chr9 21246134 21246160 -102830012 + (CACG)n Simple_repeat Simple_repeat 4 29 0 9 747 210 200 139 28 chr9 21246349 21246421 -102829751 - ID4_ SINE ID -2 81 2 9 747 1043 191 7 139 chr9 21246933 21247165 -102829007 + ORR1D1 LTR MaLR 123 331 -43 9 747 1273 40 0 0 chr9 21247165 21247313 -102828859 - B1_Mus1 SINE Alu 0 148 1 9 747 1043 191 7 139 chr9 21247313 21247360 -102828812 + ORR1D1 LTR MaLR 332 365 -9 9 747 691 226 20 0 chr9 21247366 21247512 -102828660 + B1_Mur2 SINE Alu 1 149 0 9 747 399 132 0 0 chr9 21247604 21247672 -102828500 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 747 409 272 154 11 chr9 21247683 21247865 -102828307 - Lx8 LINE L1 -244 7229 7022 9 747 317 229 14 0 chr9 21247901 21247971 -102828201 - B1_Mus2 SINE Alu 0 147 77 9 747 447 202 175 0 chr9 21248021 21248135 -102828037 - B1_Mm SINE Alu 0 147 14 9 747 224 161 250 0 chr9 21248089 21248145 -102828027 - B4A SINE B4 -142 150 81 9 747 201 167 0 0 chr9 21248150 21248204 -102827968 + T-rich Low_complexity Low_complexity 1 54 0 9 747 1209 68 0 0 chr9 21248204 21248350 -102827822 - B1_Mus2 SINE Alu 0 147 2 9 747 455 286 124 29 chr9 21248361 21248570 -102827602 - Lx8 LINE L1 -468 7005 6777 9 747 518 163 127 37 chr9 21248588 21248722 -102827450 + B1_Mur2 SINE Alu 1 146 -3 9 747 1146 75 7 0 chr9 21248723 21248869 -102827303 + B1_Mus1 SINE Alu 2 148 0 9 747 256 103 35 0 chr9 21248869 21248927 -102827245 + (CAAA)n Simple_repeat Simple_repeat 4 63 0 9 747 616 305 76 21 chr9 21248954 21249192 -102826980 - Lx8 LINE L1 -711 6762 6512 9 747 332 240 104 0 chr9 21249210 21249306 -102826866 - Lx8 LINE L1 -1059 6414 6309 9 747 364 311 69 20 chr9 21249365 21249568 -102826604 - L1M4 LINE L1 -2464 3682 3470 9 747 1096 92 7 0 chr9 21249568 21249710 -102826462 - B1_Mus1 SINE Alu -1 147 5 9 747 980 191 75 0 chr9 21249873 21250072 -102826100 + B3 SINE B2 1 214 -2 9 747 556 196 19 0 chr9 21250096 21250203 -102825969 + B1_Mur1 SINE Alu 41 149 0 9 747 418 276 48 60 chr9 21250265 21250431 -102825741 - RSINE1 SINE B4 0 165 2 9 747 638 292 6 23 chr9 21250581 21250753 -102825419 - ID_B1 SINE B4 -32 192 24 9 747 471 223 11 0 chr9 21251237 21251331 -102824841 - PB1D9 SINE Alu -13 107 13 9 747 237 257 0 108 chr9 21251258 21251341 -102824831 - MT2B LTR ERVL -360 241 168 9 747 969 129 0 0 chr9 21251369 21251508 -102824664 + B1_Mus1 SINE Alu 1 139 -9 9 747 716 200 205 6 chr9 21251537 21251708 -102824464 - B3 SINE B2 -9 207 3 9 747 210 382 9 29 chr9 21251753 21251858 -102824314 - PB1D10 SINE Alu -13 104 2 9 747 424 350 48 32 chr9 21251890 21252141 -102824031 + B4A SINE B4 37 291 -1 9 747 182 274 47 31 chr9 21252899 21252963 -102823209 + MIRc SINE MIR 88 152 -116 9 747 643 225 62 0 chr9 21253186 21253346 -102822826 - ID_B1 SINE B4 -1 223 54 9 747 372 220 118 20 chr9 21253981 21254083 -102822089 - PB1D7 SINE Alu 0 120 9 9 747 543 240 54 0 chr9 21254097 21254226 -102821946 - ID_B1 SINE B4 -5 219 84 9 747 491 282 91 8 chr9 21254310 21254500 -102821672 + ID_B1 SINE B4 14 224 0 9 747 546 305 65 43 chr9 21255197 21255475 -102820697 - B4A SINE B4 -8 284 1 9 747 185 333 48 0 chr9 21255514 21255577 -102820595 - MIRb SINE MIR -78 190 125 9 747 1603 28 0 0 chr9 21255579 21255757 -102820415 + B2_Mm1a SINE B2 2 179 -14 9 747 660 36 0 0 chr9 21255757 21255840 -102820332 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 9 747 187 283 19 19 chr9 21256163 21256217 -102819955 + MIR SINE MIR 100 153 -55 9 747 704 264 62 16 chr9 21257427 21257619 -102818553 + ID_B1 SINE B4 22 222 -2 9 747 1369 111 0 10 chr9 21258135 21258327 -102817845 + B2_Mm2 SINE B2 2 191 -4 9 747 891 167 160 6 chr9 21258328 21258358 -102817814 - B3 SINE B2 -4 212 183 9 747 225 0 0 0 chr9 21258358 21258383 -102817789 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 747 891 167 160 6 chr9 21258383 21258533 -102817639 - B3 SINE B2 -34 182 5 9 747 324 0 0 0 chr9 21258534 21258570 -102817602 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 747 1081 124 38 43 chr9 21258577 21258763 -102817409 - B2_Mm2 SINE B2 -10 185 1 9 747 253 118 0 38 chr9 21258763 21258816 -102817356 + T-rich Low_complexity Low_complexity 5 55 0 9 747 531 220 0 0 chr9 21258835 21258935 -102817237 - B1_Mur4 SINE Alu -50 100 1 9 747 396 0 0 0 chr9 21259013 21259057 -102817115 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 747 342 262 165 0 chr9 21259083 21259186 -102816986 - RSINE1 SINE B4 -37 128 9 9 747 299 133 123 74 chr9 21259843 21259924 -102816248 - B1F SINE Alu 0 149 65 9 747 343 153 82 14 chr9 21259856 21259929 -102816243 - ID_B1 SINE B4 -8 216 139 9 747 189 0 0 0 chr9 21260254 21260275 -102815897 + (CA)n Simple_repeat Simple_repeat 1 21 0 9 747 476 275 22 30 chr9 21260335 21260470 -102815702 - RSINE1 SINE B4 -4 161 28 9 747 241 300 0 14 chr9 21260577 21260648 -102815524 - ID_B1 SINE B4 -34 190 121 9 747 814 46 174 0 chr9 21260763 21260872 -102815300 - B1_Mus2 SINE Alu -15 132 5 9 747 262 336 45 22 chr9 21261011 21261145 -102815027 - L1ME3 LINE L1 -90 6072 5936 9 747 486 94 106 0 chr9 21261259 21261344 -102814828 - B1_Mur4 SINE Alu -55 95 2 9 747 227 212 234 0 chr9 21261414 21261547 -102814625 - ID_B1 SINE B4 -59 165 2 9 747 249 167 225 25 chr9 21261547 21261627 -102814545 - PB1D10 SINE Alu -2 115 20 9 747 1592 43 16 0 chr9 21262040 21262228 -102813944 + B2_Mm2 SINE B2 1 191 -4 9 747 528 284 53 14 chr9 21262294 21262351 -102813821 + ID SINE ID 2 61 -163 9 747 378 57 43 0 chr9 21262351 21262421 -102813751 + (CCA)n Simple_repeat Simple_repeat 2 74 0 9 747 528 284 53 14 chr9 21262421 21262570 -102813602 + ID_B1 SINE B4 62 216 -8 9 747 24 32 0 0 chr9 21262656 21262687 -102813485 + AT_rich Low_complexity Low_complexity 1 31 0 9 747 180 121 61 0 chr9 21262838 21262871 -102813301 - MIRc SINE MIR -125 143 109 9 747 935 113 64 0 chr9 21263158 21263299 -102812873 - B1_Mur4 SINE Alu 0 150 1 9 747 452 196 9 47 chr9 21263617 21263724 -102812448 - B3 SINE B2 -3 213 111 9 747 280 317 113 94 chr9 21263673 21263769 -102812403 - B4 SINE B4 0 292 191 9 747 186 43 0 0 chr9 21263769 21263792 -102812380 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 9 747 664 262 48 13 chr9 21263792 21263970 -102812202 - ID_B1 SINE B4 -28 196 14 9 747 366 248 64 9 chr9 21263999 21264109 -102812063 - B1F SINE Alu -5 144 29 9 747 283 229 16 0 chr9 21265338 21265399 -102810773 - ID_B1 SINE B4 -4 220 159 9 747 402 324 88 33 chr9 21265810 21265992 -102810180 - B3A SINE B2 -24 192 1 9 747 1169 62 0 7 chr9 21266762 21266908 -102809264 - B1_Mm SINE Alu 0 147 3 9 747 667 276 98 10 chr9 21266953 21267147 -102809025 - B4 SINE B4 -70 222 12 9 747 350 274 95 0 chr9 21267160 21267255 -102808917 - PB1D7 SINE Alu -5 115 12 9 747 185 0 40 0 chr9 21267565 21267590 -102808582 + (CTG)n Simple_repeat Simple_repeat 3 28 0 9 747 432 247 0 11 chr9 21268201 21268291 -102807881 - PB1D9 SINE Alu -29 91 3 9 747 259 304 122 29 chr9 21268300 21268439 -102807733 - B4A SINE B4 -131 161 10 9 747 280 295 144 75 chr9 21268450 21268637 -102807535 - ID_B1 SINE B4 0 224 25 9 747 1227 54 0 0 chr9 21269001 21269148 -102807024 - B1_Mus2 SINE Alu 0 147 1 9 747 377 299 102 20 chr9 21269364 21269511 -102806661 + B4A SINE B4 68 226 -66 9 747 1215 49 0 0 chr9 21269622 21269764 -102806408 - B1_Mus2 SINE Alu -5 142 1 9 747 220 156 22 22 chr9 21270300 21270346 -102805826 + B4A SINE B4 99 144 -148 9 747 264 257 78 122 chr9 21270393 21270508 -102805664 + ID_B1 SINE B4 16 125 -99 9 747 695 237 15 81 chr9 21270574 21270771 -102805401 - B3 SINE B2 0 216 22 9 747 814 212 31 43 chr9 21270795 21270958 -102805214 - RSINE1 SINE B4 -2 163 3 9 747 538 324 18 53 chr9 21270979 21271204 -102804968 - ID_B1 SINE B4 -4 220 4 9 747 410 141 0 0 chr9 21271204 21271259 -102804913 + B1F SINE Alu 88 142 -7 9 747 330 197 0 43 chr9 21271197 21271266 -102804906 + ID_B1 SINE B4 159 224 0 9 747 420 301 86 62 chr9 21271273 21271482 -102804690 + B4A SINE B4 6 219 -73 9 747 525 280 87 0 chr9 21271482 21271632 -102804540 + RSINE1 SINE B4 2 164 -1 9 747 222 214 0 0 chr9 21271634 21271676 -102804496 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 747 25 0 0 0 chr9 21271696 21271721 -102804451 + AT_rich Low_complexity Low_complexity 1 25 0 9 747 300 242 30 0 chr9 21271725 21271791 -102804381 + B4A SINE B4 219 286 -6 9 747 3103 54 3 5 chr9 21272336 21272727 -102803445 - L1Md_F2 LINE L1 0 6582 6193 9 747 775 65 0 0 chr9 21272873 21272972 -102803200 + B1_Mus2 SINE Alu 40 138 -9 9 747 219 36 0 0 chr9 21272972 21273000 -102803172 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 9 747 643 207 0 0 chr9 21273294 21273405 -102802767 + PB1D9 SINE Alu 2 112 -8 9 747 1295 27 0 0 chr9 21273442 21273589 -102802583 - B1_Mm SINE Alu 0 147 1 9 747 719 214 65 12 chr9 21273590 21273760 -102802412 + B3 SINE B2 31 209 -7 9 747 485 189 280 0 chr9 21273890 21274065 -102802107 + ID_B1 SINE B4 1 224 0 9 747 570 67 0 0 chr9 21274296 21274371 -102801801 + (T)n Simple_repeat Simple_repeat 1 75 0 1 747 462 271 49 21 chr9 21274577 21274720 -102801452 - B1F2 SINE Alu -1 148 2 1 747 588 297 59 5 chr9 21275080 21275266 -102800906 - ID_B1 SINE B4 -1 223 28 1 747 532 206 76 8 chr9 21276011 21276026 -102800146 + B1F1 SINE Alu 8 148 -1 1 747 631 162 26 0 chr9 21276026 21276143 -102800029 + ID_B1 SINE B4 104 223 -1 1 747 219 378 31 69 chr9 21276176 21276197 -102799975 + ID SINE ID 5 22 -202 1 747 3866 46 33 0 chr9 21276197 21276657 -102799515 - MT2C_Mm LTR ERVL 0 475 1 1 747 238 311 0 56 chr9 21276657 21276737 -102799435 + ID4 SINE ID 21 100 -52 1 747 219 378 31 69 chr9 21276737 21276794 -102799378 + ID_B1 SINE B4 23 157 -67 1 747 492 239 68 0 chr9 21277517 21277634 -102798538 + ZP3AR Satellite Satellite 14 138 -74 1 747 539 228 137 7 chr9 21277596 21277742 -102798430 + ID_B1 SINE B4 6 170 -54 1 747 1190 60 161 0 chr9 21277997 21278165 -102798007 + B2_Mm2 SINE B2 1 195 0 1 747 287 318 53 30 chr9 21278346 21278479 -102797693 + RSINE1 SINE B4 30 165 0 1 747 258 244 89 0 chr9 21279403 21279493 -102796679 + RMER30 DNA MER1_type 104 201 -1 1 747 279 0 0 0 chr9 21279799 21279830 -102796342 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 747 345 295 0 21 chr9 21279957 21280054 -102796118 - RSINE1 SINE B4 -60 105 11 1 747 372 236 35 43 chr9 21280520 21280635 -102795537 + PB1D10 SINE Alu 2 115 -2 1 747 628 250 43 0 chr9 21280653 21280793 -102795379 + RSINE1 SINE B4 1 146 -19 1 747 380 231 179 0 chr9 21281289 21281423 -102794749 + RSINE1 SINE B4 2 159 -6 1 747 1290 84 79 0 chr9 21281435 21281613 -102794559 + B2_Mm1t SINE B2 2 193 0 1 747 312 248 57 38 chr9 21281631 21281736 -102794436 + PB1D7 SINE Alu 14 120 0 1 747 743 138 8 8 chr9 21281859 21281983 -102794189 - B1_Mus1 SINE Alu -19 129 6 1 747 388 194 126 98 chr9 21281876 21282019 -102794153 - MT2B LTR ERVL -337 264 118 1 747 321 269 176 30 chr9 21282000 21282165 -102794007 - ID_B1 SINE B4 -4 220 32 1 747 273 268 14 14 chr9 21282199 21282271 -102793901 - B4 SINE B4 -67 225 154 1 747 1004 215 24 14 chr9 21282278 21282486 -102793686 - B3 SINE B2 -5 211 2 1 747 267 216 0 0 chr9 21282533 21282584 -102793588 - RSINE1 SINE B4 -104 61 11 1 747 866 215 32 50 chr9 21284295 21284515 -102791657 + ID_B1 SINE B4 2 217 -7 1 747 2099 193 42 25 chr9 21285915 21286394 -102789778 - RLTR12B LTR ERVK -4 524 38 1 747 297 0 0 0 chr9 21286394 21286427 -102789745 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1 747 934 104 0 0 chr9 21286438 21286572 -102789600 - B1_Mm SINE Alu -1 146 13 1 747 1792 91 53 0 chr9 21286616 21286880 -102789292 - L1_Mus3 LINE L1 0 6638 6361 1 747 310 343 0 97 chr9 21286905 21287060 -102789112 - RSINE1 SINE B4 -24 141 2 1 747 761 265 45 10 chr9 21287073 21287275 -102788897 + ID_B1 SINE B4 2 210 -14 1 747 607 283 66 0 chr9 21287739 21287905 -102788267 + B3 SINE B2 39 215 -1 1 747 269 239 32 64 chr9 21288097 21288191 -102787981 + PB1D10 SINE Alu 25 115 -2 1 747 685 279 52 5 chr9 21288192 21288383 -102787789 + ID_B1 SINE B4 24 223 -1 1 747 290 193 16 253 chr9 21288992 21289028 -102787144 - B2_Mm2 SINE B2 0 195 171 1 747 621 176 74 25 chr9 21289028 21289150 -102787022 + B1_Mur3 SINE Alu 4 131 -18 1 747 725 193 16 253 chr9 21289150 21289307 -102786865 - B3 SINE B2 -13 203 48 1 747 735 150 18 0 chr9 21289369 21289482 -102786690 + PB1D9 SINE Alu 1 115 -5 1 747 1212 68 0 0 chr9 21290858 21291005 -102785167 + B1_Mus1 SINE Alu 2 148 0 1 747 454 275 168 41 chr9 21292104 21292301 -102783871 + ID_B1 SINE B4 3 224 0 1 747 528 192 86 68 chr9 21292757 21292919 -102783253 + B3 SINE B2 39 203 -13 1 747 1583 62 0 0 chr9 21292940 21293132 -102783040 - B2_Mm1a SINE B2 0 193 2 1 747 323 267 61 122 chr9 21293308 21293399 -102782773 + ID_B1 SINE B4 25 208 -16 1 747 519 164 29 9 chr9 21293399 21293504 -102782668 + B1_Mur2 SINE Alu 27 133 -16 1 747 771 104 0 0 chr9 21293504 21293619 -102782553 + (GA)n Simple_repeat Simple_repeat 1 115 0 1 747 270 106 0 0 chr9 21295446 21295493 -102780679 + (T)n Simple_repeat Simple_repeat 1 47 0 1 747 1021 44 80 14 chr9 21295503 21295641 -102780531 - B1_Mm SINE Alu 0 147 1 1 747 245 226 19 0 chr9 21295731 21295752 -102780420 - MER117 DNA MER1_type -35 162 141 1 747 245 320 0 48 chr9 21295752 21295857 -102780315 - MER117 DNA MER1_type 0 197 98 1 747 665 0 0 0 chr9 21295895 21295976 -102780196 - L1Md_A LINE L1 0 6582 6502 1 747 647 266 116 4 chr9 21299244 21299486 -102776686 + B4 SINE B4 11 279 -13 1 747 1182 82 0 0 chr9 21300075 21300222 -102775950 - B1_Mus2 SINE Alu 0 147 1 1 747 333 0 0 0 chr9 21300343 21300380 -102775792 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 747 489 34 0 0 chr9 21301271 21301330 -102774842 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 747 195 42 0 0 chr9 21301330 21301353 -102774819 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 747 255 217 0 0 chr9 21301624 21301684 -102774488 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 747 460 274 18 54 chr9 21302318 21302484 -102773688 + ID_B1 SINE B4 65 224 0 1 747 1179 75 7 0 chr9 21302631 21302778 -102773394 + B1_Mus1 SINE Alu 1 148 0 1 747 804 69 0 17 chr9 21303434 21303552 -102772620 + B1_Mus1 SINE Alu 33 148 0 1 747 299 183 50 14 chr9 21303959 21304186 -102771986 + (CA)n Simple_repeat Simple_repeat 1 235 0 1 747 567 275 17 55 chr9 21304208 21304389 -102771783 + B4A SINE B4 119 292 0 1 747 259 230 394 13 chr9 21306406 21306562 -102769610 + B4A SINE B4 4 219 -73 1 747 378 271 18 36 chr9 21306649 21306760 -102769412 + B4A SINE B4 120 228 -64 1 747 389 194 174 0 chr9 21306760 21306858 -102769314 - B1_Mus2 SINE Alu 0 147 33 1 747 278 242 65 0 chr9 21306921 21306983 -102769189 + B1F1 SINE Alu 70 135 -14 1 747 387 0 0 0 chr9 21306993 21307036 -102769136 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 747 306 304 147 61 chr9 21307132 21307377 -102768795 - ORR1E LTR MaLR -22 337 72 1 747 352 297 248 13 chr9 21307387 21307544 -102768628 + B3 SINE B2 5 198 0 1 747 228 282 56 14 chr9 21307554 21307626 -102768546 - ORR1E LTR MaLR -284 75 1 1 747 316 296 52 0 chr9 21308186 21308301 -102767871 + ID_B1 SINE B4 97 217 -7 1 747 551 173 0 6 chr9 21308478 21308652 -102767520 + (TTGG)n Simple_repeat Simple_repeat 4 176 0 1 747 312 260 52 0 chr9 21308652 21308729 -102767443 - ID4_ SINE ID -2 81 1 1 747 412 232 100 10 chr9 21310483 21310583 -102765589 + RSINE1 SINE B4 2 110 -55 1 747 215 286 18 0 chr9 21313040 21313096 -102763076 - RSINE1 SINE B4 -101 64 8 1 747 238 67 0 135 chr9 21313095 21313147 -102763025 - ID_B1 SINE B4 -44 180 136 1 747 234 311 33 11 chr9 21313159 21313250 -102762922 - ID_B1 SINE B4 -130 94 2 1 747 585 244 0 0 chr9 21313256 21313371 -102762801 - PB1D10 SINE Alu -2 115 1 1 747 216 0 0 0 chr9 21314053 21314077 -102762095 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 747 284 202 74 130 chr9 21315282 21315390 -102760782 + B1F SINE Alu 9 110 -39 1 747 549 209 9 9 chr9 21315422 21315533 -102760639 + RSINE1 SINE B4 14 124 -41 1 747 207 0 0 0 chr9 21315533 21315556 -102760616 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 747 335 257 99 15 chr9 21315560 21315714 -102760458 + MTC LTR MaLR 1 201 -218 1 747 1088 55 0 64 chr9 21315723 21315880 -102760292 + B1_Mus2 SINE Alu 1 147 0 1 747 873 182 72 129 chr9 21315885 21316035 -102760137 + L1_Mur3 LINE L1 3944 4096 -1784 1 747 851 151 58 0 chr9 21316035 21316174 -102759998 - B1_Mur4 SINE Alu -1 149 3 1 747 873 182 72 129 chr9 21316174 21316213 -102759959 + L1_Mur3 LINE L1 4097 4117 -1763 1 747 1486 63 11 0 chr9 21316213 21316403 -102759769 + B2_Mm1t SINE B2 2 193 0 1 747 873 182 72 129 chr9 21316403 21316546 -102759626 + L1_Mur3 LINE L1 4118 4258 -1622 1 747 299 301 26 59 chr9 21316546 21316569 -102759603 + ID_B1 SINE B4 70 216 -8 1 747 466 230 29 0 chr9 21316569 21316698 -102759474 + B1_Mur4 SINE Alu 1 142 -8 1 747 3954 230 91 16 chr9 21316715 21317767 -102758405 + Lx7 LINE L1 5650 6780 -916 1 747 1516 199 22 69 chr9 21317792 21318065 -102758107 + Lx7 LINE L1 6911 7172 -524 1 747 2033 101 22 112 chr9 21318065 21318423 -102757749 + ORR1A3 LTR MaLR 1 326 0 1 747 1516 199 22 69 chr9 21318423 21318510 -102757662 + Lx7 LINE L1 7173 7254 -442 1 747 189 147 0 0 chr9 21318540 21318574 -102757598 + (T)n Simple_repeat Simple_repeat 1 34 0 1 747 2693 37 0 12 chr9 21318603 21318930 -102757242 - L1Md_F2 LINE L1 0 6582 6260 1 747 1228 41 0 7 chr9 21318990 21319138 -102757034 - B1_Mus2 SINE Alu 0 147 1 1 747 395 285 82 14 chr9 21319180 21319326 -102756846 - RSINE1 SINE B4 -8 157 2 1 747 327 318 92 0 chr9 21319487 21319682 -102756490 - ID_B1 SINE B4 -11 213 1 1 747 408 265 50 35 chr9 21320036 21320177 -102755995 + ID_B1 SINE B4 78 220 -4 1 747 781 94 0 8 chr9 21320063 21320181 -102755991 + B1_Mus1 SINE Alu 31 147 -1 1 747 723 208 91 25 chr9 21320267 21320464 -102755708 + B3 SINE B2 5 214 -2 1 747 294 50 0 0 chr9 21320478 21320518 -102755654 - B1_Mus1 SINE Alu -108 40 1 1 747 1084 226 146 43 chr9 21320519 21320847 -102755325 - ORR1D-int LTR MaLR -161 1209 848 1 747 273 45 23 0 chr9 21320894 21320938 -102755234 - B1_Mus2 SINE Alu 0 147 103 1 747 1192 54 0 26 chr9 21321000 21321152 -102755020 + B1_Mus1 SINE Alu 1 148 0 1 747 1365 172 149 47 chr9 21321154 21321562 -102754610 - RMER6B LTR ERVK -10 451 2 1 747 622 115 124 9 chr9 21321567 21321672 -102754500 - B3 SINE B2 -98 118 2 1 747 1438 73 0 77 chr9 21321971 21322180 -102753992 - B2_Mm2 SINE B2 -2 193 1 1 747 476 287 0 16 chr9 21322740 21322864 -102753308 - B4 SINE B4 -81 211 90 1 747 747 0 0 0 chr9 21322930 21323013 -102753159 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 747 744 171 0 0 chr9 21323021 21323144 -102753028 - B1_Mus1 SINE Alu -20 128 6 1 747 324 319 47 70 chr9 21323035 21323163 -102753009 - B4 SINE B4 -88 204 80 1 747 611 256 26 13 chr9 21323230 21323384 -102752788 + B3 SINE B2 1 156 -60 1 747 1178 82 0 0 chr9 21323393 21323540 -102752632 - B1_Mus2 SINE Alu 0 147 1 1 747 2660 36 2 238 chr9 21323548 21324056 -102752116 - RLTR10 LTR ERVK -2 388 1 1 747 16328 26 4 1 chr9 21324058 21325996 -102750176 - RLTR10-int LTR ERVK -3 1984 41 1 747 2660 36 2 238 chr9 21326008 21326516 -102749656 - RLTR10 LTR ERVK -2 388 1 1 747 837 250 19 14 chr9 21326668 21326875 -102749297 - ID_B1 SINE B4 -7 217 10 1 747 264 196 71 0 chr9 21326892 21326948 -102749224 - B4 SINE B4 -140 152 93 1 747 281 228 0 0 chr9 21327129 21327182 -102748990 - ID_B1 SINE B4 -69 155 103 1 747 1741 188 115 0 chr9 21327182 21327555 -102748617 + MTC LTR MaLR 1 416 -5 1 747 350 333 40 8 chr9 21327716 21327840 -102748332 - RSINE1 SINE B4 -2 163 36 1 747 1007 218 24 34 chr9 21327860 21328069 -102748103 - B3 SINE B2 -6 210 4 1 747 955 54 131 0 chr9 21328101 21328231 -102747941 - B1_Mus2 SINE Alu 0 147 1 1 747 616 192 158 0 chr9 21328272 21328392 -102747780 - B1_Mus1 SINE Alu -9 139 1 1 747 21 36 0 0 chr9 21328451 21328479 -102747693 + AT_rich Low_complexity Low_complexity 1 28 0 1 747 1292 91 23 0 chr9 21328483 21328659 -102747513 - B2_Mm1t SINE B2 -12 181 2 1 747 705 206 7 0 chr9 21328722 21328858 -102747314 + B1_Mus1 SINE Alu 12 148 0 1 747 287 239 75 0 chr9 21328869 21328936 -102747236 + ID_B1 SINE B4 143 214 -10 1 747 550 207 91 0 chr9 21329003 21329124 -102747048 - B1_Mur2 SINE Alu 0 149 18 1 747 348 24 0 0 chr9 21329235 21329276 -102746896 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 747 869 225 89 0 chr9 21329410 21329601 -102746571 - B3 SINE B2 -6 210 3 1 747 1024 222 176 6 chr9 21329617 21329930 -102746242 - ORR1D2 LTR MaLR 0 370 5 1 747 248 211 18 0 chr9 21330126 21330183 -102745989 - ZP3AR Satellite Satellite -130 82 25 1 747 309 26 0 0 chr9 21331156 21331194 -102744978 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 747 189 0 0 0 chr9 21331194 21331214 -102744958 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 747 583 299 8 0 chr9 21331233 21331367 -102744805 + RSINE1 SINE B4 31 165 0 1 747 26 0 0 27 chr9 21331372 21331389 -102744783 + AT_rich Low_complexity Low_complexity 1 17 0 1 747 1212 49 0 0 chr9 21331389 21331532 -102744640 - B1_Mus1 SINE Alu -5 143 1 1 747 26 0 0 27 chr9 21331532 21331551 -102744621 + AT_rich Low_complexity Low_complexity 1 19 0 1 747 919 227 50 5 chr9 21331561 21331760 -102744412 + B3 SINE B2 1 208 -8 1 747 1660 27 5 0 chr9 21331762 21331950 -102744222 - B2_Mm1t SINE B2 -3 190 2 1 747 287 317 12 0 chr9 21332188 21332270 -102743902 - ID4 SINE ID 0 83 1 1 747 629 94 0 0 chr9 21332270 21332366 -102743806 - ZP3AR Satellite Satellite -64 148 53 1 747 243 292 96 18 chr9 21332395 21332566 -102743606 + L2b LINE L2 3037 3223 -164 1 747 1081 205 0 99 chr9 21332586 21332819 -102743353 - B3 SINE B2 -5 211 2 1 747 340 267 73 82 chr9 21334007 21334117 -102742055 + RSINE1 SINE B4 30 138 -27 1 747 424 225 63 0 chr9 21334174 21334285 -102741887 + PB1D7 SINE Alu 2 119 -1 1 747 297 222 75 43 chr9 21334285 21334379 -102741793 + ID_B1 SINE B4 77 173 -51 1 747 612 101 0 0 chr9 21334661 21334750 -102741422 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 1 747 180 0 0 0 chr9 21334761 21334781 -102741391 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 747 1008 90 0 0 chr9 21334781 21334914 -102741258 - B2_Mm2 SINE B2 -62 133 1 1 747 207 0 0 0 chr9 21334926 21334949 -102741223 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 747 1142 52 15 0 chr9 21334949 21335085 -102741087 - B1_Mm SINE Alu -9 138 1 1 747 355 272 35 9 chr9 21335108 21335223 -102740949 - ID_B1 SINE B4 -8 216 99 1 747 1045 97 8 0 chr9 21335325 21335459 -102740713 - B1_Mus1 SINE Alu -13 135 1 1 747 856 181 7 20 chr9 21335555 21335707 -102740465 + B1_Mur4 SINE Alu 1 150 0 1 747 583 227 117 0 chr9 21335739 21335867 -102740305 + B1_Mur1 SINE Alu 1 143 -6 1 747 1121 77 14 0 chr9 21335879 21336022 -102740150 + B1_Mus2 SINE Alu 2 146 -1 1 747 238 250 14 14 chr9 21336073 21336142 -102740030 + ID4 SINE ID 3 71 -12 1 747 1165 35 0 0 chr9 21336507 21336650 -102739522 + B1_Mus1 SINE Alu 6 148 0 1 747 780 272 14 23 chr9 21336683 21336901 -102739271 - B3 SINE B2 0 216 1 1 747 523 278 128 0 chr9 21336924 21337057 -102739115 - RSINE1 SINE B4 -2 163 14 1 747 1367 133 23 19 chr9 21337061 21337276 -102738896 - MTC LTR MaLR -8 413 198 1 747 360 0 0 0 chr9 21337276 21337316 -102738856 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 1 747 342 0 0 0 chr9 21337366 21337404 -102738768 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 747 1375 36 0 6 chr9 21337404 21337564 -102738608 - B2_Mm1a SINE B2 -33 160 1 1 747 1070 153 58 113 chr9 21337564 21337664 -102738508 - MTC LTR MaLR -212 209 105 1 747 793 182 229 0 chr9 21337664 21337834 -102738338 + B3 SINE B2 2 210 -6 1 747 1070 153 58 113 chr9 21337834 21337954 -102738218 - MTC LTR MaLR -317 104 3 1 747 197 98 24 0 chr9 21337989 21338030 -102738142 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 1 747 1355 88 5 21 chr9 21338480 21338667 -102737505 - B2_Mm1t SINE B2 -9 184 1 1 747 1139 88 103 23 chr9 21338697 21338871 -102737301 + B2_Mm1a SINE B2 1 188 -5 1 747 1336 76 27 0 chr9 21338872 21339056 -102737116 - B2_Mm2 SINE B2 -6 189 1 1 747 438 278 0 0 chr9 21339061 21339158 -102737014 - PB1D7 SINE Alu 0 120 24 1 747 664 235 60 0 chr9 21339190 21339339 -102736833 + B3A SINE B2 4 161 -37 1 747 382 304 39 11 chr9 21339486 21339609 -102736563 - PB1D7 SINE Alu 0 120 1 1 747 448 193 17 0 chr9 21339627 21339746 -102736426 + (TA)n Simple_repeat Simple_repeat 2 122 0 1 747 451 302 10 0 chr9 21339801 21339897 -102736275 + RSINE1 SINE B4 44 140 -25 1 747 315 0 0 0 chr9 21339897 21339932 -102736240 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 747 282 287 92 0 chr9 21340021 21340108 -102736064 - B1F SINE Alu -25 124 30 1 747 335 143 206 62 chr9 21340525 21340622 -102735550 - PB1D9 SINE Alu -9 111 1 1 747 346 216 26 39 chr9 21340710 21340787 -102735385 - B3 SINE B2 -74 142 67 1 747 2218 182 49 23 chr9 21340868 21341201 -102734971 - RLTR18B LTR ERVK -73 439 96 1 747 534 119 0 0 chr9 21341201 21341285 -102734887 + (CACG)n Simple_repeat Simple_repeat 4 87 0 1 747 2218 182 49 23 chr9 21341285 21341378 -102734794 - RLTR18B LTR ERVK -417 95 2 1 747 312 283 44 9 chr9 21341658 21341772 -102734400 + ID_B1 SINE B4 87 204 -20 1 747 542 200 19 108 chr9 21341838 21341995 -102734177 - URR1B DNA MER1_type 0 225 83 1 747 615 159 0 22 chr9 21342103 21342238 -102733934 + CT-rich Low_complexity Low_complexity 1 132 0 1 747 616 213 0 0 chr9 21342247 21342355 -102733817 - RSINE1 SINE B4 -56 109 2 1 747 364 234 12 38 chr9 21342370 21342450 -102733722 - ID_B1 SINE B4 -14 210 133 1 747 383 240 42 92 chr9 21342550 21342692 -102733480 - B1F SINE Alu -12 137 3 1 747 358 342 58 13 chr9 21342763 21342917 -102733255 + RSINE1 SINE B4 3 163 -2 1 747 408 20 0 0 chr9 21342920 21342969 -102733203 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 747 315 235 117 81 chr9 21343002 21343113 -102733059 + PB1D7 SINE Alu 5 119 -1 1 747 532 271 78 7 chr9 21343082 21343223 -102732949 + ID_B1 SINE B4 54 204 -20 1 747 425 256 102 16 chr9 21343230 21343357 -102732815 + B1_Mus2 SINE Alu 5 142 -5 1 747 191 209 70 0 chr9 21343740 21343783 -102732389 - MIRm SINE MIR -125 151 106 1 747 180 0 0 0 chr9 21343867 21343887 -102732285 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 747 1266 34 0 7 chr9 21343887 21344026 -102732146 - B1_Mus2 SINE Alu -8 139 1 1 747 755 277 31 0 chr9 21344658 21344817 -102731355 - RSINE1 SINE B4 0 165 2 1 747 509 194 148 0 chr9 21345342 21345450 -102730722 + B1F SINE Alu 14 137 -12 1 747 464 301 51 14 chr9 21345495 21345633 -102730539 - RSINE1 SINE B4 -19 146 4 1 747 674 148 101 8 chr9 21345671 21345800 -102730372 + B1_Mus2 SINE Alu 5 145 -2 1 747 1511 65 16 0 chr9 21345803 21345988 -102730184 + B2_Mm1a SINE B2 2 189 -4 1 747 324 241 23 152 chr9 21346224 21346356 -102729816 - PB1D10 SINE Alu -2 115 1 1 747 654 202 57 102 chr9 21346356 21346417 -102729755 - ID SINE ID -161 63 11 1 747 534 43 0 0 chr9 21346683 21346752 -102729420 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 747 830 220 20 9 chr9 21346818 21347039 -102729133 - L1MB3 LINE L1 -266 5917 5694 1 747 279 0 0 0 chr9 21347051 21347082 -102729090 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 747 1164 65 0 0 chr9 21347082 21347221 -102728951 - B1_Mus2 SINE Alu -8 139 1 1 747 417 39 0 0 chr9 21347292 21347343 -102728829 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1 747 1946 35 0 0 chr9 21347472 21347698 -102728474 + L1_Mus1 LINE L1 6342 6567 0 1 747 642 179 193 44 chr9 21347831 21348012 -102728160 - B3 SINE B2 -4 212 5 1 747 764 221 7 14 chr9 21348042 21348189 -102727983 - B1_Mur2 SINE Alu -2 147 2 1 747 411 153 9 26 chr9 21348192 21348276 -102727896 + CT-rich Low_complexity Low_complexity 30 113 0 1 747 927 110 59 0 chr9 21348276 21348412 -102727760 - B1_Mus1 SINE Alu -1 147 4 1 747 411 153 9 26 chr9 21348412 21348441 -102727731 + polypyrimidine Low_complexity Low_complexity 2 29 0 1 747 867 44 26 0 chr9 21348441 21348555 -102727617 - B1_Mm SINE Alu 0 147 31 1 747 560 202 0 0 chr9 21348549 21348643 -102727529 - B1_Mur2 SINE Alu -38 111 18 1 747 181 282 79 66 chr9 21348878 21348954 -102727218 - MIRb SINE MIR -134 134 58 1 747 763 222 7 0 chr9 21349635 21349779 -102726393 - B1_Mus2 SINE Alu -2 145 1 1 747 969 137 20 7 chr9 21349789 21349936 -102726236 - B1_Mur4 SINE Alu 0 150 2 1 747 23 86 0 0 chr9 21351263 21351321 -102724851 + GC_rich Low_complexity Low_complexity 1 58 0 1 747 334 118 0 62 chr9 21351350 21351431 -102724741 + (CGG)n Simple_repeat Simple_repeat 3 78 0 1 747 25 0 0 0 chr9 21351504 21351529 -102724643 + GC_rich Low_complexity Low_complexity 1 25 0 1 747 26 50 0 0 chr9 21351712 21351752 -102724420 + GC_rich Low_complexity Low_complexity 1 40 0 1 747 350 308 10 0 chr9 21352904 21353008 -102723164 + PB1D10 SINE Alu 3 107 -10 1 747 691 231 14 7 chr9 21353168 21353316 -102722856 - B1_Mur3 SINE Alu 0 149 1 1 747 227 211 86 17 chr9 21353318 21353376 -102722796 + PB1D7 SINE Alu 53 114 -6 1 747 1164 120 156 0 chr9 21353619 21353811 -102722361 - URR1A DNA MER1_type 0 226 5 1 747 403 268 100 138 chr9 21353882 21354042 -102722130 - RSINE1 SINE B4 0 165 12 1 747 1509 48 21 5 chr9 21354058 21354248 -102721924 - B2_Mm1a SINE B2 0 193 1 1 747 424 313 93 0 chr9 21354259 21354409 -102721763 - ID_B1 SINE B4 -7 217 54 1 747 317 329 97 35 chr9 21354432 21354690 -102721482 - MLT1C LTR MaLR 0 467 194 1 747 639 262 35 0 chr9 21355231 21355372 -102720800 - ID_B1 SINE B4 -8 216 71 1 747 415 309 41 41 chr9 21356031 21356200 -102719972 + ID_B1 SINE B4 8 176 -48 1 747 284 252 47 108 chr9 21356104 21356233 -102719939 + B1_Mur2 SINE Alu 6 126 -23 1 747 834 176 14 0 chr9 21356582 21356724 -102719448 + B1_Mus1 SINE Alu 5 148 0 1 747 315 0 0 0 chr9 21357232 21357267 -102718905 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 747 1161 49 14 7 chr9 21357283 21357428 -102718744 - B1_Mm SINE Alu 0 147 2 1 747 647 167 345 0 chr9 21357428 21357501 -102718671 - URR1A DNA MER1_type 0 226 153 1 747 1480 39 11 6 chr9 21357501 21357681 -102718491 - B2_Mm2 SINE B2 -14 181 1 1 747 647 167 345 0 chr9 21357681 21357775 -102718397 - URR1A DNA MER1_type -74 152 2 1 747 225 277 0 84 chr9 21358375 21358446 -102717726 - ID4 SINE ID -5 78 14 1 747 1142 180 5 45 chr9 21359867 21360088 -102716084 + B3 SINE B2 4 215 -1 1 747 1261 40 0 0 chr9 21360153 21360305 -102715867 + B2_Mm2 SINE B2 3 154 -41 1 747 565 344 66 0 chr9 21360713 21360925 -102715247 - B4A SINE B4 -66 226 1 1 747 222 111 24 122 chr9 21360987 21361039 -102715133 + T-rich Low_complexity Low_complexity 24 74 0 1 747 1248 48 7 0 chr9 21361039 21361185 -102714987 - B1_Mus2 SINE Alu 0 147 1 1 747 222 111 24 122 chr9 21361185 21361214 -102714958 + T-rich Low_complexity Low_complexity 1 23 0 1 747 1561 52 5 0 chr9 21361214 21361405 -102714767 - B2_Mm1a SINE B2 -1 192 1 1 747 286 215 60 48 chr9 21362165 21362248 -102713924 + ZP3AR Satellite Satellite 8 91 -121 1 747 242 226 0 36 chr9 21363334 21363389 -102712783 - B1F2 SINE Alu -91 58 6 1 747 254 245 38 0 chr9 21363343 21363396 -102712776 - B4 SINE B4 -156 136 82 1 747 757 128 56 0 chr9 21363422 21363547 -102712625 - B1_Mus2 SINE Alu -1 146 15 1 747 330 263 49 73 chr9 21363456 21363579 -102712593 - MT2B LTR ERVL -337 264 145 1 747 1693 26 0 0 chr9 21364071 21364261 -102711911 - B2_Mm1t SINE B2 -3 190 1 1 747 22 35 0 0 chr9 21364271 21364300 -102711872 + AT_rich Low_complexity Low_complexity 1 29 0 1 747 310 264 40 81 chr9 21364379 21364478 -102711694 + MT2B LTR ERVL 145 239 -362 1 747 446 184 13 0 chr9 21364411 21364487 -102711685 + B1_Mus2 SINE Alu 15 91 -56 1 747 1140 97 0 0 chr9 21364494 21364638 -102711534 + B1_Mus2 SINE Alu 4 147 0 1 93 2119 143 115 0 chr9 21364661 21365017 -102711155 + RMER4B LTR ERVK 42 438 -147 1 748 1378 40 91 0 chr9 21365361 21365379 -102710793 - B2_Mm1a SINE B2 0 193 176 1 748 243 0 0 0 chr9 21365379 21365406 -102710766 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 748 1378 40 91 0 chr9 21365406 21365563 -102710609 - B2_Mm1a SINE B2 -18 175 3 1 748 1023 68 116 0 chr9 21366368 21366515 -102709657 - B2_Mm2 SINE B2 -31 164 1 1 748 1157 106 24 87 chr9 21366532 21366738 -102709434 - B2_Mm1a SINE B2 0 193 1 1 748 250 188 24 48 chr9 21366787 21366871 -102709301 + T-rich Low_complexity Low_complexity 5 86 0 1 748 378 299 94 132 chr9 21366881 21367147 -102709025 - B4 SINE B4 -16 276 21 1 748 290 276 194 8 chr9 21367147 21367271 -102708901 - B1F SINE Alu -1 148 2 1 748 285 275 38 0 chr9 21367274 21367354 -102708818 - PB1 SINE Alu -3 124 42 1 748 434 242 0 88 chr9 21367361 21367497 -102708675 + MT2B LTR ERVL 141 264 -337 1 748 1077 59 0 0 chr9 21367397 21367532 -102708640 + B1_Mm SINE Alu 13 147 0 1 748 180 0 0 0 chr9 21367532 21367552 -102708620 + (A)n Simple_repeat Simple_repeat 1 20 0 1 748 1083 144 35 0 chr9 21367564 21367737 -102708435 + B2_Mm1t SINE B2 1 179 -14 1 748 1210 33 0 0 chr9 21367792 21367945 -102708227 - ORR1A1-int LTR MaLR -1638 154 2 1 748 398 278 37 64 chr9 21368116 21368150 -102708022 - CYRA11_Mm Unknown Y-chromosome -278 339 223 1 748 819 146 15 0 chr9 21368150 21368287 -102707885 + URR1B DNA MER1_type 86 224 -1 1 748 398 278 37 64 chr9 21368287 21368304 -102707868 - CYRA11_Mm Unknown Y-chromosome -278 222 157 1 748 219 88 0 0 chr9 21368726 21368760 -102707412 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 748 337 281 24 0 chr9 21369021 21369103 -102707069 + MER58A DNA MER1_type 21 104 -120 1 748 192 234 0 0 chr9 21369156 21369203 -102706969 + CT-rich Low_complexity Low_complexity 2 48 0 1 748 342 0 0 0 chr9 21369453 21369491 -102706681 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 748 360 268 120 43 chr9 21370031 21370148 -102706024 - B4A SINE B4 -166 126 1 1 748 469 172 64 2 chr9 21370176 21370278 -102705894 - B1_Mur1 SINE Alu -1 148 41 1 748 685 231 7 7 chr9 21370303 21370438 -102705734 - B1F SINE Alu -6 143 9 1 748 304 302 59 92 chr9 21370438 21370456 -102705716 - B4A SINE B4 -71 221 74 1 748 263 309 0 12 chr9 21370948 21371030 -102705142 - ID4_ SINE ID -47 105 25 1 748 649 304 91 23 chr9 21371571 21371998 -102704174 - L1MB5 LINE L1 -8 6166 5711 1 748 180 125 0 0 chr9 21372005 21372037 -102704135 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 748 201 74 0 0 chr9 21372039 21372066 -102704106 + (TAGG)n Simple_repeat Simple_repeat 4 30 0 1 748 230 0 33 0 chr9 21372110 21372140 -102704032 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 1 748 239 302 58 11 chr9 21372254 21372341 -102703831 - PB1D10 SINE Alu -2 115 25 1 748 221 255 0 0 chr9 21372655 21372702 -102703470 - ID SINE ID -158 66 20 1 748 270 0 0 0 chr9 21372702 21372732 -102703440 + (T)n Simple_repeat Simple_repeat 1 30 0 1 748 1319 70 41 0 chr9 21372913 21373085 -102703087 - B2_Mm2 SINE B2 -8 187 9 1 748 189 0 0 0 chr9 21373089 21373110 -102703062 + (CTTG)n Simple_repeat Simple_repeat 1 21 0 1 748 198 71 0 0 chr9 21373110 21373138 -102703034 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 1 748 636 256 112 10 chr9 21373297 21373494 -102702678 + ID_B1 SINE B4 1 217 -7 1 748 188 250 117 65 chr9 21373642 21373719 -102702453 + L2 LINE L2 422 502 -2917 1 748 1215 48 0 7 chr9 21374087 21374235 -102701937 - B1_Mus1 SINE Alu 0 148 2 1 748 857 269 25 63 chr9 21374238 21374524 -102701648 + B4A SINE B4 12 286 -6 1 748 387 60 0 0 chr9 21374539 21374589 -102701583 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 748 287 231 15 35 chr9 21374612 21374695 -102701477 + PB1 SINE Alu 13 60 -67 1 748 388 282 0 133 chr9 21374701 21374785 -102701387 + PB1 SINE Alu 4 73 -54 1 748 1397 80 16 11 chr9 21374785 21374975 -102701197 + B2_Mm1t SINE B2 2 192 -1 1 748 388 282 0 133 chr9 21374975 21375033 -102701139 + PB1 SINE Alu 74 126 -1 1 748 406 289 26 26 chr9 21375635 21375752 -102700420 + ID_B1 SINE B4 103 219 -5 1 748 769 215 148 25 chr9 21375772 21375968 -102700204 + ID_B1 SINE B4 1 220 -4 1 748 467 342 49 39 chr9 21376216 21376420 -102699752 - B4 SINE B4 -84 208 3 1 748 345 322 56 43 chr9 21376450 21376612 -102699560 + RSINE1 SINE B4 2 165 0 1 748 457 206 95 80 chr9 21376700 21376837 -102699335 - B1_Mur3 SINE Alu 0 149 11 1 748 333 263 106 82 chr9 21376705 21376875 -102699297 - ID_B1 SINE B4 -1 223 50 1 748 758 234 94 42 chr9 21376912 21377104 -102699068 + B3 SINE B2 9 210 -6 1 748 609 234 138 21 chr9 21377104 21377292 -102698880 + B3 SINE B2 5 214 -2 1 748 271 246 107 0 chr9 21377447 21377530 -102698642 - PB1D10 SINE Alu -10 107 20 1 748 1328 72 55 0 chr9 21377542 21377723 -102698449 - B2_Mm2 SINE B2 -2 193 3 1 748 217 167 0 40 chr9 21377758 21377808 -102698364 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 748 452 267 48 32 chr9 21377868 21377992 -102698180 - B4A SINE B4 -59 233 108 1 748 360 148 0 0 chr9 21378056 21378117 -102698055 + (T)n Simple_repeat Simple_repeat 1 61 0 1 748 261 276 108 65 chr9 21378160 21378176 -102697996 - RMER1C Other Other -1 1341 1319 1 748 291 135 176 0 chr9 21378176 21378250 -102697922 - Lx8 LINE L1 0 7473 7387 1 748 261 276 108 65 chr9 21378250 21378392 -102697780 - RMER1C Other Other -1 1318 1100 1 748 540 238 106 6 chr9 21378285 21378446 -102697726 - Lx8 LINE L1 -142 7331 7155 1 748 231 169 409 0 chr9 21379121 21379192 -102696980 + MIRb SINE MIR 47 146 -122 1 748 918 221 67 21 chr9 21379233 21379473 -102696699 - MIRb SINE MIR -13 255 5 1 748 558 138 138 0 chr9 21380119 21380213 -102695959 - B1_Mur4 SINE Alu -14 136 30 1 748 315 321 125 64 chr9 21380709 21381005 -102695167 - MER21B LTR ERV1 -120 743 430 1 748 397 239 54 0 chr9 21381363 21381455 -102694717 + PB1D10 SINE Alu 3 99 -18 1 748 304 283 297 0 chr9 21381536 21381681 -102694491 + Tigger5 DNA MER2_type 2218 2405 -1 1 748 267 227 157 11 chr9 21381731 21381820 -102694352 - PB1D10 SINE Alu -11 106 5 1 748 1105 109 46 61 chr9 21381900 21382096 -102694076 - B2_Mm2 SINE B2 -1 194 2 1 748 403 239 42 32 chr9 21383034 21383129 -102693043 - PB1D10 SINE Alu -3 114 19 1 748 216 200 0 0 chr9 21383149 21383194 -102692978 + T-rich Low_complexity Low_complexity 1 45 0 1 748 473 257 85 9 chr9 21383252 21383358 -102692814 - RSINE1 SINE B4 -31 134 21 1 748 234 0 0 0 chr9 21383369 21383395 -102692777 + (TTAG)n Simple_repeat Simple_repeat 3 28 0 1 748 1149 70 0 0 chr9 21383395 21383538 -102692634 - B1_Mus2 SINE Alu -3 144 2 1 748 767 206 95 18 chr9 21383555 21383723 -102692449 - B3 SINE B2 -1 215 35 1 748 378 204 0 0 chr9 21385374 21385472 -102690700 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 748 198 0 0 0 chr9 21385673 21385695 -102690477 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 748 329 177 13 0 chr9 21387296 21387375 -102688797 + (TGGA)n Simple_repeat Simple_repeat 4 83 0 1 748 1102 71 0 7 chr9 21387756 21387897 -102688275 - B1_Mus2 SINE Alu -7 140 1 1 748 574 279 29 39 chr9 21388308 21388501 -102687671 + B3A SINE B2 2 194 -1 1 748 250 213 43 0 chr9 21388509 21388556 -102687616 + B3 SINE B2 6 54 -162 1 748 728 124 26 9 chr9 21388906 21389020 -102687152 - B1_Mur3 SINE Alu 0 149 34 1 748 302 276 95 67 chr9 21388951 21389130 -102687042 - RLTR25A LTR ERVK -527 576 393 1 748 889 85 0 0 chr9 21389397 21389515 -102686657 - B2_Mm2 SINE B2 -74 121 4 1 748 257 360 102 30 chr9 21389501 21389527 -102686645 - B4 SINE B4 -45 247 171 1 748 474 255 0 64 chr9 21389527 21389636 -102686536 - PB1D10 SINE Alu -4 113 12 1 748 257 360 102 30 chr9 21389636 21389667 -102686505 - B4 SINE B4 -45 170 70 1 748 341 256 12 60 chr9 21389698 21389781 -102686391 - RSINE1 SINE B4 -84 81 3 1 748 724 193 14 7 chr9 21389781 21389927 -102686245 - B1_Mus2 SINE Alu 0 147 1 1 748 347 315 37 52 chr9 21390060 21390194 -102685978 + ID_B1 SINE B4 16 147 -77 1 748 232 261 43 0 chr9 21390142 21390211 -102685961 + B1F1 SINE Alu 15 86 -63 1 748 429 143 0 41 chr9 21390207 21390280 -102685892 + B4 SINE B4 6 75 -217 1 748 902 186 108 11 chr9 21390281 21390466 -102685706 - B3 SINE B2 -10 206 4 1 748 353 294 73 0 chr9 21390484 21390593 -102685579 - B1F2 SINE Alu -20 129 13 1 748 22 0 0 0 chr9 21393131 21393153 -102683019 + AT_rich Low_complexity Low_complexity 1 22 0 1 748 197 183 20 128 chr9 21393519 21393597 -102682575 - MIRc SINE MIR -40 228 163 1 748 273 156 219 0 chr9 21398556 21398620 -102677552 + ID4_ SINE ID 4 81 -2 1 748 444 252 164 50 chr9 21398910 21399069 -102677103 + B3 SINE B2 27 203 -13 1 748 323 267 20 10 chr9 21399183 21399285 -102676887 - B1_Mur3 SINE Alu 0 149 47 1 748 458 326 51 41 chr9 21399308 21399503 -102676669 - ID_B1 SINE B4 -3 221 25 1 748 253 286 18 0 chr9 21399453 21399509 -102676663 - ID4_ SINE ID -10 73 17 1 748 231 159 68 0 chr9 21399922 21399966 -102676206 - tRNA-Ala-GCA tRNA tRNA -26 49 3 1 748 216 233 0 0 chr9 21400062 21400105 -102676067 - B1_Mur4 SINE Alu -105 45 3 1 748 377 302 51 8 chr9 21400169 21400286 -102675886 + RSINE1 SINE B4 6 127 -38 1 748 378 0 0 0 chr9 21400492 21400534 -102675638 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 748 237 277 77 0 chr9 21400538 21400603 -102675569 - B1_Mur1 SINE Alu -20 129 60 1 748 240 184 0 0 chr9 21400673 21400722 -102675450 + CT-rich Low_complexity Low_complexity 4 52 0 1 748 473 346 19 32 chr9 21400826 21400984 -102675188 + RSINE1 SINE B4 2 157 -8 1 748 1196 75 0 0 chr9 21400995 21401141 -102675031 - B1_Mus2 SINE Alu 0 147 2 1 748 1244 14 21 0 chr9 21401227 21401371 -102674801 - B1_Mus2 SINE Alu 0 147 1 1 748 630 255 141 10 chr9 21401498 21401696 -102674476 + B4A SINE B4 8 231 -61 1 748 1313 20 0 0 chr9 21401697 21401844 -102674328 + B1_Mm SINE Alu 1 147 0 1 748 315 0 0 0 chr9 21401844 21401879 -102674293 + (A)n Simple_repeat Simple_repeat 1 35 0 1 748 426 174 46 11 chr9 21401908 21401995 -102674177 + PB1D9 SINE Alu 18 107 -13 1 748 183 80 0 0 chr9 21401997 21402022 -102674150 + (GGGA)n Simple_repeat Simple_repeat 3 27 0 1 748 536 289 6 32 chr9 21402328 21402485 -102673687 + B3 SINE B2 24 176 -40 1 748 526 171 70 26 chr9 21402491 21402605 -102673567 + PB1D9 SINE Alu 2 120 0 1 748 189 0 0 0 chr9 21402679 21402700 -102673472 + (T)n Simple_repeat Simple_repeat 1 21 0 1 748 397 109 0 15 chr9 21402700 21402765 -102673407 - B1_Mm SINE Alu 0 147 84 1 748 608 216 184 17 chr9 21402767 21402946 -102673226 - B3 SINE B2 -6 210 2 1 748 407 235 108 0 chr9 21403196 21403298 -102672874 - ID_B1 SINE B4 -32 192 80 1 748 1274 41 0 0 chr9 21403315 21403462 -102672710 - B1_Mus2 SINE Alu 0 147 1 1 748 930 237 74 103 chr9 21403488 21403613 -102672559 + MT2A LTR ERVL 2 119 -414 1 748 1334 45 88 17 chr9 21403613 21403794 -102672378 - B2_Mm2 SINE B2 0 195 2 1 748 930 254 68 89 chr9 21403794 21404088 -102672084 + MT2A LTR ERVL 120 540 -61 1 748 316 167 16 16 chr9 21404122 21404183 -102671989 - B3A SINE B2 -137 61 1 1 748 480 188 35 0 chr9 21404187 21404272 -102671900 - B1_Mur2 SINE Alu -13 136 49 1 748 260 247 47 47 chr9 21404200 21404285 -102671887 - MT2B LTR ERVL -322 279 195 1 748 436 275 117 82 chr9 21404856 21405062 -102671110 + ID_B1 SINE B4 12 224 0 1 748 349 227 14 47 chr9 21405137 21405235 -102670937 + PB1D10 SINE Alu 1 95 -54 1 748 283 253 93 0 chr9 21405235 21405310 -102670862 + ID4 SINE ID 1 82 -1 1 748 308 271 0 23 chr9 21405290 21405377 -102670795 + PB1D9 SINE Alu 35 119 -1 1 748 847 177 20 7 chr9 21405473 21405621 -102670551 + B1_Mur4 SINE Alu 1 150 0 1 748 354 198 23 58 chr9 21405632 21405718 -102670454 + RSINE1 SINE B4 83 165 0 1 748 519 271 34 40 chr9 21405750 21405927 -102670245 - B3A SINE B2 0 198 23 1 748 287 222 0 0 chr9 21405923 21405977 -102670195 - B3 SINE B2 -129 87 34 1 748 1081 150 102 20 chr9 21405985 21406182 -102669990 + MTC LTR MaLR 1 213 -208 1 748 1136 82 0 0 chr9 21406187 21406334 -102669838 + B1_Mus1 SINE Alu 2 148 0 1 748 198 0 0 0 chr9 21406334 21406356 -102669816 + (A)n Simple_repeat Simple_repeat 1 22 0 1 748 584 249 196 16 chr9 21406792 21406976 -102669196 + ID_B1 SINE B4 7 223 -1 1 748 384 162 147 0 chr9 21406996 21407064 -102669108 + PB1D9 SINE Alu 40 117 -3 1 748 450 270 33 99 chr9 21407266 21407418 -102668754 + B4 SINE B4 79 220 -72 1 748 870 170 7 7 chr9 21407283 21407425 -102668747 + B1_Mur2 SINE Alu 8 149 0 1 748 885 132 81 0 chr9 21407427 21407563 -102668609 + B1_Mm SINE Alu 1 147 0 1 748 537 176 28 159 chr9 21407571 21407753 -102668419 - B4 SINE B4 -125 167 10 1 748 1053 198 227 4 chr9 21407880 21408182 -102667990 - ORR1D1 LTR MaLR 0 359 1 1 748 291 148 213 0 chr9 21408182 21408243 -102667929 - ORR1D1-int LTR MaLR 0 1370 1297 1 748 278 226 0 0 chr9 21408373 21408426 -102667746 - RSINE1 SINE B4 -78 87 35 1 748 223 268 27 53 chr9 21408426 21408440 -102667732 - B3A SINE B2 -102 73 24 1 748 1392 90 5 5 chr9 21408619 21408799 -102667373 + B2_Mm1a SINE B2 1 181 -12 1 748 200 59 29 0 chr9 21408799 21408833 -102667339 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 748 321 82 0 0 chr9 21409553 21409602 -102666570 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 748 189 0 0 0 chr9 21409606 21409627 -102666545 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 748 813 21 0 0 chr9 21409627 21409722 -102666450 - B1_Mm SINE Alu -12 135 41 1 748 1124 148 6 6 chr9 21409726 21409899 -102666273 - RLTR20B1 LTR ERVK -108 455 283 1 748 731 270 128 28 chr9 21409899 21410181 -102665991 - RLTR41 LTR ERV1 0 446 137 1 748 1449 188 58 3 chr9 21410160 21410453 -102665719 - RLTR20B1 LTR ERVK -254 309 1 1 748 250 135 0 71 chr9 21410499 21410555 -102665617 - LTR28 LTR ERV1 -715 305 254 1 748 562 230 7 125 chr9 21410653 21410797 -102665375 + RSINE1 SINE B4 3 129 -36 1 748 1021 98 0 47 chr9 21410863 21411013 -102665159 - B1_Mur4 SINE Alu -7 143 1 1 748 25 31 0 0 chr9 21411016 21411048 -102665124 + AT_rich Low_complexity Low_complexity 1 32 0 1 748 945 158 0 0 chr9 21411049 21411188 -102664984 + B1_Mur4 SINE Alu 5 143 -7 1 748 234 233 0 0 chr9 21411210 21411270 -102664902 + GA-rich Low_complexity Low_complexity 2 61 0 1 748 505 109 9 18 chr9 21411409 21411507 -102664665 - B1_Mus1 SINE Alu -24 96 2 1 748 204 125 0 0 chr9 21412012 21412044 -102664128 + (TATG)n Simple_repeat Simple_repeat 2 33 0 1 748 558 216 25 33 chr9 21412054 21412174 -102663998 + PB1D7 SINE Alu 1 119 -1 1 748 233 182 0 18 chr9 21412210 21412266 -102663906 + GA-rich Low_complexity Low_complexity 1 55 0 1 748 496 251 82 172 chr9 21412767 21413070 -102663102 - ORR1E LTR MaLR -66 293 18 1 748 286 274 55 0 chr9 21413071 21413144 -102663028 - ID SINE ID -140 84 8 1 748 228 229 41 41 chr9 21413183 21413256 -102662916 - L1M3 LINE L1 -348 5835 5763 1 748 642 160 178 31 chr9 21413340 21413469 -102662703 + B1_Mur4 SINE Alu 2 149 -1 1 748 417 39 0 0 chr9 21413516 21413567 -102662605 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 1 748 245 197 43 43 chr9 21413686 21413755 -102662417 - B1_Mur4 SINE Alu -8 142 74 1 748 1128 102 0 0 chr9 21413816 21413963 -102662209 - B1_Mus1 SINE Alu -1 147 1 1 748 258 208 92 53 chr9 21413964 21414040 -102662132 - B2_Mm2 SINE B2 -15 180 102 1 748 1704 31 0 0 chr9 21414138 21414331 -102661841 + B2_Mm1a SINE B2 1 193 0 1 748 562 136 45 0 chr9 21414341 21414429 -102661743 - B2_Mm2 SINE B2 -102 93 2 1 748 558 263 189 26 chr9 21414548 21414739 -102661433 + ID_B1 SINE B4 3 224 0 1 748 469 262 37 90 chr9 21414742 21414876 -102661296 + RSINE1 SINE B4 2 128 -37 1 748 303 259 73 12 chr9 21415084 21415166 -102661006 + PB1D10 SINE Alu 24 110 -7 1 748 440 232 51 115 chr9 21415266 21415369 -102660803 + B1F SINE Alu 1 107 -42 1 748 1051 44 89 0 chr9 21415369 21415504 -102660668 + B1_Mm SINE Alu 1 147 0 1 748 440 232 51 115 chr9 21415504 21415556 -102660616 + B1F SINE Alu 108 146 -3 1 748 291 200 217 0 chr9 21415555 21415615 -102660557 + RSINE1 SINE B4 14 86 -79 1 748 231 250 39 0 chr9 21415671 21415723 -102660449 + (CATG)n Simple_repeat Simple_repeat 3 56 0 1 748 1169 119 11 0 chr9 21415749 21415925 -102660247 + B2_Mm1a SINE B2 2 179 -14 1 748 275 49 219 0 chr9 21415940 21415981 -102660191 + B2_Mm2 SINE B2 49 98 -97 1 748 515 234 102 0 chr9 21416037 21416165 -102660007 + B1_Mus1 SINE Alu 1 141 -7 1 748 805 144 0 146 chr9 21416168 21416339 -102659833 + B1_Mus1 SINE Alu 3 148 0 1 748 612 256 58 70 chr9 21416393 21416565 -102659607 + B3A SINE B2 33 202 -14 1 748 219 154 154 0 chr9 21416550 21416589 -102659583 - PB1D9 SINE Alu -47 73 29 1 748 823 148 22 0 chr9 21416645 21416780 -102659392 + B1_Mur3 SINE Alu 5 142 -7 1 748 1427 194 168 6 chr9 21416828 21417185 -102658987 - MTD LTR MaLR -14 405 1 1 748 1165 75 7 0 chr9 21417234 21417380 -102658792 + B1_Mus1 SINE Alu 1 147 -1 1 748 301 235 73 0 chr9 21417704 21417772 -102658400 - L1MEg LINE L1 -4140 1944 1872 1 748 1215 55 7 0 chr9 21417775 21417921 -102658251 - B1_Mus1 SINE Alu 0 148 2 1 748 619 287 25 107 chr9 21417930 21417987 -102658185 - ID_B1 SINE B4 -2 222 168 1 748 1149 88 0 0 chr9 21417987 21418135 -102658037 + B1_Mus1 SINE Alu 1 148 0 1 748 619 287 25 107 chr9 21418135 21418319 -102657853 - ID_B1 SINE B4 -57 167 1 1 748 468 203 194 8 chr9 21418351 21418475 -102657697 + B1_Mus2 SINE Alu 1 147 0 1 748 1096 95 7 0 chr9 21418477 21418624 -102657548 + B1_Mus1 SINE Alu 1 148 0 1 748 31 0 0 0 chr9 21418637 21418668 -102657504 + AT_rich Low_complexity Low_complexity 1 31 0 1 748 527 29 14 0 chr9 21418716 21418785 -102657387 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 748 416 214 71 0 chr9 21418821 21418919 -102657253 - B3A SINE B2 -91 107 3 1 748 465 232 182 8 chr9 21418944 21419070 -102657102 - B1_Mur1 SINE Alu -1 148 1 1 748 582 125 38 19 chr9 21419139 21419245 -102656927 + B1_Mus2 SINE Alu 40 147 0 1 748 377 137 0 88 chr9 21419394 21419474 -102656698 - B1_Mur2 SINE Alu 0 149 77 1 748 541 166 112 0 chr9 21419476 21419593 -102656579 + B1_Mus2 SINE Alu 13 148 -1 1 748 1297 14 0 7 chr9 21419596 21419744 -102656428 + B1_Mus2 SINE Alu 1 147 0 1 748 252 0 0 0 chr9 21419750 21419778 -102656394 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 748 238 125 25 0 chr9 21419817 21419857 -102656315 - PB1D9 SINE Alu -47 73 33 1 748 205 198 161 28 chr9 21419981 21420074 -102656098 + L2a LINE L2 3254 3413 -13 1 748 246 289 17 51 chr9 21420534 21420709 -102655463 + (CGGG)n Simple_repeat Simple_repeat 4 172 0 1 748 303 245 44 56 chr9 21421636 21421763 -102654409 + MIRm SINE MIR 38 156 -120 1 748 409 240 106 0 chr9 21421823 21421927 -102654245 - B1_Mur1 SINE Alu -7 142 28 1 748 527 196 62 0 chr9 21422119 21422231 -102653941 - B1_Mur2 SINE Alu -21 128 10 1 748 31 21 0 20 chr9 21422252 21422274 -102653898 + AT_rich Low_complexity Low_complexity 1 22 0 1 748 1008 96 138 0 chr9 21422274 21422441 -102653731 - B2_Mm1t SINE B2 -2 191 2 1 748 31 21 0 20 chr9 21422441 21422467 -102653705 + AT_rich Low_complexity Low_complexity 1 26 0 1 748 1109 92 7 0 chr9 21422481 21422623 -102653549 - B1_Mus2 SINE Alu 0 147 5 1 748 693 130 109 44 chr9 21422629 21422766 -102653406 - B1_Mus1 SINE Alu -1 147 2 1 748 466 222 68 8 chr9 21422797 21422915 -102653257 - RSINE1 SINE B4 -33 132 8 1 748 245 29 0 29 chr9 21423125 21423160 -102653012 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1 748 1527 48 37 0 chr9 21423622 21423810 -102652362 - B2_Mm2 SINE B2 0 195 1 1 748 509 241 60 8 chr9 21423836 21423953 -102652219 - RSINE1 SINE B4 -36 129 7 1 748 436 178 107 45 chr9 21424127 21424239 -102651933 - PB1D7 SINE Alu 0 120 2 1 748 1360 95 11 0 chr9 21424258 21424448 -102651724 - B2_Mm1t SINE B2 0 193 2 1 748 1176 51 0 0 chr9 21424515 21424652 -102651520 - B1_Mm SINE Alu -9 138 2 1 748 1434 170 121 21 chr9 21424720 21425051 -102651121 + ORR1D1 LTR MaLR 1 364 -10 1 748 470 162 14 0 chr9 21425097 21425171 -102651001 - B3A SINE B2 -119 79 5 1 748 243 0 0 0 chr9 21425458 21425485 -102650687 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 748 444 171 314 0 chr9 21425485 21425590 -102650582 - B1_Mur1 SINE Alu -9 140 3 1 748 422 61 15 0 chr9 21425615 21425681 -102650491 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 748 385 308 39 0 chr9 21425692 21425796 -102650376 - RSINE1 SINE B4 -40 125 18 1 748 1992 146 96 16 chr9 21425816 21426193 -102649979 - MTC LTR MaLR -14 407 1 1 748 814 106 338 0 chr9 21426233 21426375 -102649797 - B2_Mm2 SINE B2 -2 193 4 1 748 827 147 8 0 chr9 21426378 21426507 -102649665 - B1_Mus1 SINE Alu 0 148 19 1 748 893 86 86 0 chr9 21426523 21426651 -102649521 - B1_Mm SINE Alu 0 147 9 1 748 407 186 28 315 chr9 21426664 21426845 -102649327 - PB1D7 SINE Alu -2 147 19 1 748 1208 67 81 27 chr9 21426922 21426938 -102649234 - B2_Mm2 SINE B2 0 195 180 1 748 513 0 0 0 chr9 21426938 21426995 -102649177 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 1 748 1208 67 81 27 chr9 21426995 21427163 -102649009 - B2_Mm2 SINE B2 -16 179 1 1 748 238 217 127 28 chr9 21427253 21427324 -102648848 + ID4 SINE ID 1 78 -5 1 748 832 162 52 0 chr9 21427381 21427517 -102648655 + B1_Mur4 SINE Alu 1 143 -7 1 748 1253 63 90 22 chr9 21427522 21427700 -102648472 + B2_Mm2 SINE B2 1 190 -5 1 748 1123 82 0 0 chr9 21427710 21427856 -102648316 - B1_Mus1 SINE Alu -2 146 1 1 748 832 242 5 67 chr9 21427870 21428065 -102648107 + B3 SINE B2 27 209 -7 1 748 567 183 0 12 chr9 21428084 21428209 -102647963 - B1_Mur4 SINE Alu -25 124 6 1 748 284 191 47 16 chr9 21428152 21428216 -102647956 - ID_B1 SINE B4 -82 142 77 1 748 23 33 0 0 chr9 21428293 21428323 -102647849 + AT_rich Low_complexity Low_complexity 1 30 0 1 748 563 258 29 73 chr9 21428325 21428530 -102647642 + B3A SINE B2 2 197 -1 1 748 578 189 81 87 chr9 21428542 21428727 -102647445 - B3A SINE B2 -14 184 1 1 748 219 293 35 0 chr9 21428748 21428806 -102647366 + ID4 SINE ID 2 61 -22 1 748 482 220 101 0 chr9 21429196 21429305 -102646867 - ID_B1 SINE B4 -6 218 99 1 748 260 309 30 38 chr9 21429352 21429483 -102646689 - B1F1 SINE Alu -19 130 1 1 748 599 222 67 34 chr9 21429525 21429602 -102646570 + ID_B1 SINE B4 4 157 -67 1 748 303 212 119 92 chr9 21429602 21429674 -102646498 + PB1D9 SINE Alu 7 89 -31 1 748 628 207 56 14 chr9 21429674 21429816 -102646356 + B1_Mur1 SINE Alu 1 148 -1 1 748 303 212 119 92 chr9 21429816 21429852 -102646320 + PB1D9 SINE Alu 90 118 -2 1 748 406 211 209 9 chr9 21430503 21430613 -102645559 - B3A SINE B2 -66 132 1 1 748 306 0 0 0 chr9 21430624 21430658 -102645514 + (T)n Simple_repeat Simple_repeat 1 34 0 1 748 1191 75 0 0 chr9 21430658 21430804 -102645368 - B1_Mus2 SINE Alu 0 147 2 1 748 249 159 0 0 chr9 21430879 21430923 -102645249 + CT-rich Low_complexity Low_complexity 1 44 0 1 748 494 163 45 203 chr9 21430923 21431100 -102645072 - B1_Mur4 SINE Alu 0 150 2 1 748 884 172 55 16 chr9 21431111 21431294 -102644878 - B2_Mm2 SINE B2 -4 191 2 1 748 637 239 88 11 chr9 21431313 21431495 -102644677 - B3A SINE B2 0 216 27 1 748 21 0 0 0 chr9 21431599 21431620 -102644552 + AT_rich Low_complexity Low_complexity 1 21 0 1 748 403 282 51 8 chr9 21431676 21431794 -102644378 - B4A SINE B4 -88 204 82 1 748 252 0 0 0 chr9 21431794 21431822 -102644350 + (T)n Simple_repeat Simple_repeat 1 28 0 1 748 248 243 28 14 chr9 21431827 21431898 -102644274 - B4A SINE B4 -8 284 213 1 748 380 308 108 40 chr9 21432204 21432380 -102643792 - B3 SINE B2 -2 214 27 1 748 180 0 0 0 chr9 21432393 21432413 -102643759 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 748 1090 53 15 0 chr9 21432413 21432546 -102643626 - B1_Mus2 SINE Alu -11 136 2 1 748 990 263 178 9 chr9 21432561 21432876 -102643296 + ORR1D2 LTR MaLR 1 368 -2 1 748 359 260 71 64 chr9 21432915 21433055 -102643117 - B1_Mur2 SINE Alu 0 149 9 1 748 218 183 74 123 chr9 21433079 21433136 -102643036 + PB1D10 SINE Alu 40 92 -25 1 748 1570 43 21 0 chr9 21433136 21433324 -102642848 - B2_Mm1a SINE B2 0 193 2 1 748 218 183 74 123 chr9 21433324 21433347 -102642825 + PB1D10 SINE Alu 93 116 -1 1 748 1710 26 0 0 chr9 21433611 21433803 -102642369 - B2_Mm1a SINE B2 0 193 2 1 748 622 151 34 50 chr9 21433805 21433924 -102642248 - B1_Mur3 SINE Alu 0 149 33 1 748 440 256 0 49 chr9 21433968 21434091 -102642081 - B3 SINE B2 -24 192 76 1 748 1421 60 16 26 chr9 21434569 21434759 -102641413 + B2_Mm1a SINE B2 5 192 -1 1 748 577 300 16 71 chr9 21434806 21434989 -102641183 - B3A SINE B2 0 198 26 1 748 546 57 0 0 chr9 21434991 21435061 -102641111 + (TTTTC)n Simple_repeat Simple_repeat 2 71 0 1 748 1157 62 7 0 chr9 21435069 21435215 -102640957 - B1_Mus2 SINE Alu 0 147 1 1 748 617 191 96 28 chr9 21435217 21435395 -102640777 - B2_Mm2 SINE B2 -2 193 4 1 748 574 218 0 162 chr9 21435431 21435491 -102640681 - B1_Mur3 SINE Alu -21 128 88 1 748 184 30 61 0 chr9 21435491 21435524 -102640648 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 748 1174 57 0 0 chr9 21435526 21435666 -102640506 - B1_Mus1 SINE Alu -6 142 3 1 748 574 218 0 162 chr9 21435666 21435750 -102640422 - B1_Mur3 SINE Alu -62 87 5 1 748 255 283 18 132 chr9 21435669 21435783 -102640389 - MT2B LTR ERVL -361 240 140 1 748 236 238 0 0 chr9 21435754 21435796 -102640376 - B3A SINE B2 -155 43 2 1 748 247 141 359 0 chr9 21435851 21435915 -102640257 + B4 SINE B4 203 289 -3 1 748 397 311 156 0 chr9 21435946 21436081 -102640091 - RSINE1 SINE B4 -8 157 2 1 748 386 227 31 0 chr9 21436253 21436350 -102639822 - B4A SINE B4 -3 289 190 1 748 1049 71 14 0 chr9 21436371 21436511 -102639661 - B1_Mus2 SINE Alu 0 147 6 1 748 521 224 54 84 chr9 21436404 21436570 -102639602 - MT2B LTR ERVL -337 264 104 1 748 340 301 62 21 chr9 21436409 21436602 -102639570 - ORR1B1-int LTR MaLR -755 754 554 1 748 459 188 179 0 chr9 21436922 21437039 -102639133 - B1_Mur1 SINE Alu -11 138 1 1 748 304 349 19 0 chr9 21441276 21441382 -102634790 - Tigger7 DNA MER2_type -1 2490 2383 1 748 546 248 17 0 chr9 21441494 21441611 -102634561 - Tigger7 DNA MER2_type -2353 138 20 1 748 212 340 71 47 chr9 21442066 21442236 -102633936 + L2b LINE L2 3185 3358 -17 1 748 959 234 209 23 chr9 21442421 21442652 -102633520 - MTD LTR MaLR 0 419 144 1 748 990 150 0 0 chr9 21442652 21442792 -102633380 + B1_Mur3 SINE Alu 2 141 -8 1 748 959 234 209 23 chr9 21442792 21442910 -102633262 - MTD LTR MaLR -276 143 6 1 748 192 309 36 0 chr9 21444130 21444185 -102631987 - L2 LINE L2 -516 2903 2847 1 748 620 300 18 50 chr9 21444279 21444500 -102631672 - B3 SINE B2 0 216 3 1 748 279 0 0 0 chr9 21444505 21444536 -102631636 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 748 544 287 41 27 chr9 21444549 21444696 -102631476 - B1F1 SINE Alu 0 149 1 1 748 242 341 0 68 chr9 21444803 21444891 -102631281 + ID4_ SINE ID 2 83 0 1 748 379 212 41 41 chr9 21445102 21445216 -102630956 - PB1D7 SINE Alu -6 143 30 1 748 199 291 157 44 chr9 21445833 21445988 -102630184 - L2b LINE L2 -31 3356 3159 1 748 478 205 164 8 chr9 21446256 21446384 -102629788 - B1F2 SINE Alu 0 149 2 1 748 882 123 77 0 chr9 21446561 21446691 -102629481 - B1_Mur4 SINE Alu -6 144 5 1 748 207 100 0 0 chr9 21447006 21447036 -102629136 + (GAA)n Simple_repeat Simple_repeat 2 31 0 1 748 26 30 0 0 chr9 21447257 21447290 -102628882 + AT_rich Low_complexity Low_complexity 1 33 0 1 748 298 256 35 35 chr9 21447370 21447455 -102628717 - ID_B1 SINE B4 -58 166 82 1 748 725 133 256 18 chr9 21447958 21448126 -102628046 - URR1B DNA MER1_type -17 208 1 1 748 590 287 98 71 chr9 21448386 21448579 -102627593 - B4 SINE B4 -7 285 79 1 748 1568 42 0 40 chr9 21448579 21448779 -102627393 - B2_Mm1t SINE B2 0 193 2 1 748 590 287 98 71 chr9 21448779 21448840 -102627332 - B4 SINE B4 -214 78 24 1 748 423 297 25 0 chr9 21448846 21448964 -102627208 - ID_B1 SINE B4 -5 219 99 1 748 496 241 0 44 chr9 21449021 21449134 -102627038 - B1_Mur1 SINE Alu -1 148 41 1 748 225 235 0 73 chr9 21449089 21449144 -102627028 - MT2B LTR ERVL -361 240 190 1 748 915 219 53 10 chr9 21449163 21449370 -102626802 - B3 SINE B2 0 216 1 1 748 584 147 167 0 chr9 21449452 21449554 -102626618 - B3 SINE B2 -92 124 6 1 748 638 248 57 0 chr9 21449570 21449711 -102626461 - B1_Mur3 SINE Alu 0 149 1 1 748 614 222 22 15 chr9 21449716 21449853 -102626319 - B1F SINE Alu -8 141 4 1 748 248 266 0 72 chr9 21450194 21450263 -102625909 - tRNA-Ala-GCY_ tRNA tRNA -9 66 3 1 748 798 230 185 19 chr9 21450450 21450781 -102625391 - MTD LTR MaLR -8 399 3 1 748 953 266 0 19 chr9 21451135 21451342 -102624830 + B3 SINE B2 2 204 -12 1 748 1377 106 0 51 chr9 21451326 21451372 -102624800 - B2_Mm1a SINE B2 0 195 161 1 748 444 37 0 0 chr9 21451372 21451426 -102624746 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1 748 1377 35 0 23 chr9 21451426 21451587 -102624585 - B2_Mm1a SINE B2 -32 161 1 1 748 234 216 59 0 chr9 21452308 21452359 -102623813 - MER3 DNA MER1_type -66 143 90 1 748 272 224 41 116 chr9 21452696 21452817 -102623355 - PB1D10 SINE Alu -1 116 5 1 748 209 33 33 0 chr9 21453011 21453041 -102623131 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 748 391 258 22 0 chr9 21453051 21453140 -102623032 - PB1D10 SINE Alu -18 99 9 1 748 1924 219 90 8 chr9 21453223 21453842 -102622330 - L1MB7 LINE L1 -317 5867 5191 1 748 279 0 0 0 chr9 21453843 21453874 -102622298 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 748 551 312 93 52 chr9 21453907 21454177 -102621995 - B4 SINE B4 -11 281 1 1 748 628 276 39 6 chr9 21454375 21454557 -102621615 - B3A SINE B2 -9 189 2 1 748 325 228 131 50 chr9 21454610 21454743 -102621429 - B1F SINE Alu -8 140 1 1 748 1172 35 7 0 chr9 21454926 21455068 -102621104 - B1_Mus1 SINE Alu 0 148 6 1 748 450 208 28 56 chr9 21455067 21455174 -102620998 - B1_Mm SINE Alu -11 136 33 1 748 255 295 38 25 chr9 21455174 21455254 -102620918 - ID4_ SINE ID 0 83 3 1 748 234 340 75 37 chr9 21455450 21455557 -102620615 - RSINE1 SINE B4 0 165 55 1 748 230 237 51 0 chr9 21455667 21455726 -102620446 - PB1D7 SINE Alu -9 111 50 1 748 284 158 18 0 chr9 21455757 21455814 -102620358 + CT-rich Low_complexity Low_complexity 1 58 0 1 748 315 71 0 0 chr9 21455811 21455853 -102620319 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 1 748 720 163 101 0 chr9 21456054 21456183 -102619989 - B1_Mus1 SINE Alu -1 147 6 1 748 334 308 113 47 chr9 21456055 21456205 -102619967 - B4 SINE B4 -69 223 64 1 748 327 206 96 14 chr9 21456190 21456297 -102619875 - PB1D10 SINE Alu -2 147 27 1 748 301 253 89 0 chr9 21456449 21456528 -102619644 - B3A SINE B2 -8 190 105 1 748 225 0 0 0 chr9 21456672 21456697 -102619475 + (TTGG)n Simple_repeat Simple_repeat 2 26 0 1 748 313 256 25 37 chr9 21456698 21456779 -102619393 - ID4_ SINE ID -1 82 3 1 748 626 321 0 45 chr9 21456954 21457156 -102619016 - B3A SINE B2 -5 193 1 1 748 510 172 48 33 chr9 21457538 21457673 -102618499 - B1F2 SINE Alu -2 147 3 1 748 1278 217 137 16 chr9 21457687 21458053 -102618119 - MTD LTR MaLR -9 410 1 1 748 449 117 369 0 chr9 21461032 21461135 -102615037 + B1_Mur4 SINE Alu 10 150 0 1 748 788 211 82 0 chr9 21461160 21461307 -102614865 + B3 SINE B2 2 160 -56 1 748 1336 78 73 0 chr9 21461317 21461496 -102614676 - B2_Mm2 SINE B2 0 195 4 1 748 1131 86 0 0 chr9 21461749 21461889 -102614283 + B1_Mus1 SINE Alu 2 141 -7 1 748 279 79 0 0 chr9 21461889 21461927 -102614245 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 1 748 579 314 70 64 chr9 21461929 21462116 -102614056 + B3A SINE B2 1 188 -10 1 748 278 26 0 25 chr9 21462128 21462168 -102614004 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 748 1191 44 0 0 chr9 21462168 21462303 -102613869 - B1_Mm SINE Alu -10 137 3 1 748 495 241 119 8 chr9 21462344 21462478 -102613694 + B1F2 SINE Alu 1 149 0 1 748 319 339 42 51 chr9 21462494 21462612 -102613560 + RSINE1 SINE B4 4 120 -45 1 748 502 167 13 0 chr9 21462607 21462685 -102613487 - B3A SINE B2 -118 80 2 1 748 266 116 56 78 chr9 21462704 21462770 -102613402 - B1_Mur4 SINE Alu -2 148 83 1 748 329 242 0 0 chr9 21462841 21462907 -102613265 + PB1D10 SINE Alu 44 109 -8 1 748 569 234 85 28 chr9 21463518 21463659 -102612513 - B1_Mur1 SINE Alu 0 149 1 1 748 450 132 0 78 chr9 21463963 21464053 -102612119 + B1_Mur4 SINE Alu 68 150 0 1 748 324 348 121 0 chr9 21464062 21464203 -102611969 + B4A SINE B4 58 215 -77 1 748 496 257 90 51 chr9 21464369 21464525 -102611647 + B3 SINE B2 54 215 -1 1 748 28 0 0 0 chr9 21464535 21464563 -102611609 + AT_rich Low_complexity Low_complexity 1 28 0 1 748 1255 41 0 7 chr9 21466112 21466260 -102609912 - B1_Mm SINE Alu 0 147 1 1 748 192 40 0 0 chr9 21466386 21466411 -102609761 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 748 2190 142 48 35 chr9 21466425 21466819 -102609353 - Lx4A LINE L1 -1 7057 6659 1 748 551 237 69 35 chr9 21466822 21466845 -102609327 - B1_Mur2 SINE Alu 0 149 124 1 748 180 0 0 0 chr9 21466845 21466865 -102609307 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 748 593 237 69 35 chr9 21466865 21466985 -102609187 - B1_Mm SINE Alu -26 123 1 1 748 213 237 48 48 chr9 21467464 21467526 -102608646 - PB1D9 SINE Alu -2 118 57 1 748 242 256 37 49 chr9 21467556 21467638 -102608534 - ID4 SINE ID -1 82 2 1 748 345 315 22 0 chr9 21468172 21468264 -102607908 + B1F SINE Alu 34 127 -22 1 748 1337 162 126 99 chr9 21468480 21468844 -102607328 - ORR1D1 LTR MaLR 0 374 1 1 748 23 0 0 0 chr9 21469547 21469570 -102606602 + AT_rich Low_complexity Low_complexity 1 23 0 1 748 1348 77 22 11 chr9 21471252 21471437 -102604735 - B2_Mm1t SINE B2 -4 189 3 1 748 328 157 40 54 chr9 21472650 21472724 -102603448 + PB1D9 SINE Alu 46 118 -2 1 748 283 311 48 32 chr9 21472760 21472886 -102603286 + B3 SINE B2 3 130 -86 1 748 541 319 124 5 chr9 21475085 21475302 -102600870 - B4A SINE B4 -4 288 46 1 748 362 164 60 0 chr9 21475370 21475437 -102600735 + PB1D9 SINE Alu 26 96 -24 1 748 535 144 42 75 chr9 21475436 21475556 -102600616 + B1_Mur3 SINE Alu 34 149 0 1 748 916 121 114 0 chr9 21475785 21475951 -102600221 + B2_Mm2 SINE B2 3 187 -8 1 748 335 324 33 92 chr9 21476778 21476931 -102599241 - B1F1 SINE Alu 0 149 6 1 748 257 349 20 149 chr9 21476785 21477034 -102599138 - ID_B1 SINE B4 -7 217 1 1 748 301 227 61 0 chr9 21477082 21477148 -102599024 - ID4 SINE ID -2 81 12 1 748 432 218 1 40 chr9 21477261 21477361 -102598811 - B4 SINE B4 -69 96 2 1 748 1194 144 113 5 chr9 21480609 21480812 -102595360 + URR1B DNA MER1_type 1 225 0 1 748 297 266 276 24 chr9 21481513 21481640 -102594532 + B3 SINE B2 2 160 -56 1 748 246 169 13 90 chr9 21482169 21482247 -102593925 + T-rich Low_complexity Low_complexity 2 73 0 1 748 1256 134 13 44 chr9 21482335 21482562 -102593610 - LFSINE_Vert SINE SINE -18 441 222 1 748 259 148 65 0 chr9 21484203 21484260 -102591912 + PB1D10 SINE Alu 61 125 -2 1 748 334 179 250 0 chr9 21484654 21484738 -102591434 - U6 snRNA snRNA -2 105 1 1 748 255 218 12 71 chr9 21484783 21484867 -102591305 - PB1D10 SINE Alu -27 90 12 1 748 294 315 21 32 chr9 21485227 21485322 -102590850 - PB1 SINE Alu -8 119 26 1 748 590 252 39 16 chr9 21485392 21485521 -102590651 - RSINE1 SINE B4 -32 133 2 1 748 658 256 72 52 chr9 21485620 21485814 -102590358 - B3A SINE B2 0 198 1 1 748 198 0 0 0 chr9 21485835 21485857 -102590315 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 748 5759 61 17 17 chr9 21485866 21486470 -102589702 - L1_Mus1 LINE L1 0 6567 5961 1 748 1636 42 0 0 chr9 21486470 21486662 -102589510 - B2_Mm1a SINE B2 0 193 2 1 748 5759 61 17 17 chr9 21486662 21486812 -102589360 - L1_Mus1 LINE L1 -607 5960 5813 1 748 582 232 27 0 chr9 21487029 21487141 -102589031 - B1F1 SINE Alu -34 115 1 1 748 617 154 373 13 chr9 21487198 21487356 -102588816 + B3 SINE B2 1 215 -1 1 748 788 191 208 0 chr9 21487416 21487589 -102588583 - B3 SINE B2 -7 209 1 1 748 524 304 34 28 chr9 21487604 21487780 -102588392 - B4A SINE B4 -114 178 2 1 748 232 294 79 8 chr9 21487786 21487913 -102588259 - L1M4 LINE L1 -1120 5026 4891 1 748 389 296 37 9 chr9 21487938 21488047 -102588125 + PB1D10 SINE Alu 1 112 -5 1 748 228 303 124 0 chr9 21488269 21488358 -102587814 - MLT1D LTR MaLR -129 376 277 1 748 189 0 0 0 chr9 21488373 21488394 -102587778 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 748 675 197 16 0 chr9 21488412 21488539 -102587633 + B3A SINE B2 2 130 -68 1 748 372 274 128 0 chr9 21489160 21489277 -102586895 + B3A SINE B2 1 132 -66 1 748 783 235 7 21 chr9 21489299 21489502 -102586670 - B3 SINE B2 0 195 1 1 748 325 230 78 20 chr9 21489705 21489807 -102586365 + PB1D10 SINE Alu 8 115 -2 1 748 318 328 117 8 chr9 21489990 21490110 -102586062 + RSINE1 SINE B4 29 161 -4 1 748 604 236 65 0 chr9 21491551 21491674 -102584498 + RSINE1 SINE B4 14 144 -21 1 748 1247 54 0 0 chr9 21492252 21492400 -102583772 - B1_Mus1 SINE Alu 0 148 1 1 748 344 238 28 108 chr9 21492559 21492681 -102583491 + PB1D10 SINE Alu 8 127 0 1 748 561 278 59 53 chr9 21492697 21492849 -102583323 + RSINE1 SINE B4 13 165 0 1 748 195 290 0 46 chr9 21492917 21492982 -102583190 - L3 LINE CR1 -3384 1105 1044 1 748 189 0 0 0 chr9 21494217 21494238 -102581934 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 748 448 104 13 0 chr9 21494246 21494317 -102581855 - B2_Mm2 SINE B2 -95 121 47 1 748 1241 77 53 0 chr9 21494330 21494500 -102581672 - B2_Mm1t SINE B2 -14 179 1 1 748 267 333 143 0 chr9 21494506 21494632 -102581540 - MER77 LTR ERVL -282 325 182 1 748 355 190 291 28 chr9 21494919 21495060 -102581112 - B3 SINE B2 0 216 39 1 748 809 179 46 35 chr9 21495136 21495310 -102580862 - B2_Mm2 SINE B2 0 195 20 1 748 383 281 20 40 chr9 21495313 21495413 -102580759 - PB1D7 SINE Alu -2 118 21 1 748 514 152 0 0 chr9 21495532 21495611 -102580561 - B1_Mur4 SINE Alu -15 135 57 1 748 240 243 151 67 chr9 21495539 21495658 -102580514 - RLTR25B LTR ERVK -507 521 393 1 93 691 61 282 26 chr9 21495714 21495831 -102580341 + B1_Mm SINE Alu 1 147 0 1 749 1401 84 16 10 chr9 21495977 21496170 -102580002 + B2_Mm2 SINE B2 2 195 0 1 749 1156 91 0 0 chr9 21496174 21496317 -102579855 + B1_Mus2 SINE Alu 1 143 -4 1 749 237 146 0 0 chr9 21496319 21496367 -102579805 + (A)n Simple_repeat Simple_repeat 1 48 0 1 749 199 182 204 0 chr9 21496739 21496783 -102579389 + MIRm SINE MIR 117 169 -107 1 749 321 341 112 37 chr9 21498088 21498222 -102577950 + ID_B1 SINE B4 27 170 -54 1 749 309 247 50 70 chr9 21498142 21498242 -102577930 + PB1D10 SINE Alu 15 112 -5 1 749 1091 84 14 0 chr9 21498249 21498392 -102577780 + B1_Mus2 SINE Alu 1 145 -2 1 749 880 139 7 40 chr9 21498419 21498569 -102577603 + B1_Mur4 SINE Alu 6 150 0 1 749 1151 65 0 0 chr9 21499118 21499257 -102576915 + B1_Mus1 SINE Alu 1 139 -9 1 749 198 0 0 0 chr9 21499268 21499290 -102576882 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 749 244 130 22 0 chr9 21500000 21500046 -102576126 - MTE2a LTR MaLR -28 351 305 1 749 180 0 0 0 chr9 21500046 21500066 -102576106 + (T)n Simple_repeat Simple_repeat 1 20 0 2 749 389 181 61 50 chr9 21500300 21500399 -102575773 + B1F1 SINE Alu 50 149 0 3 749 402 234 187 33 chr9 21500775 21500925 -102575247 - MTE2b LTR MaLR -3 376 204 4 749 1038 52 96 0 chr9 21500928 21501063 -102575109 + B1_Mus1 SINE Alu 1 148 0 5 749 207 139 0 0 chr9 21501063 21501099 -102575073 + (A)n Simple_repeat Simple_repeat 1 36 0 6 749 233 328 0 0 chr9 21501102 21501163 -102575009 - MTE2b LTR MaLR -218 161 101 4 749 307 203 15 45 chr9 21502191 21502258 -102573914 - ID4_ SINE ID -16 67 3 7 749 323 256 149 28 chr9 21502265 21502446 -102573726 - Lx8 LINE L1 -5 7468 7266 8 749 619 248 0 42 chr9 21502454 21502597 -102573575 - B1_Mur1 SINE Alu -2 147 11 9 749 966 121 0 28 chr9 21502655 21502800 -102573372 - B1_Mm SINE Alu -6 141 1 1 749 289 254 0 0 chr9 21502832 21502891 -102573281 + ID_B1 SINE B4 145 203 -21 1 749 1668 36 0 0 chr9 21502906 21503099 -102573073 + B2_Mm1a SINE B2 1 193 0 1 749 1080 49 0 0 chr9 21503699 21503842 -102572330 + B1_Mus1 SINE Alu 6 148 0 1 749 292 298 67 0 chr9 21504038 21504142 -102572030 + PB1D9 SINE Alu 4 114 -6 1 749 237 33 0 0 chr9 21504444 21504474 -102571698 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 1 749 424 293 107 0 chr9 21504722 21504862 -102571310 - B3 SINE B2 -60 156 2 1 749 180 77 0 0 chr9 21505387 21505413 -102570759 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1 749 1042 216 5 14 chr9 21505994 21506201 -102569971 + B3 SINE B2 2 206 -10 1 749 647 228 70 16 chr9 21506222 21506409 -102569763 + B3A SINE B2 1 197 -1 1 749 644 182 46 31 chr9 21506409 21506538 -102569634 + B1_Mur1 SINE Alu 1 132 -17 2 749 882 228 5 26 chr9 21506562 21506756 -102569416 - B3 SINE B2 -25 191 2 2 749 554 256 0 24 chr9 21506786 21506910 -102569262 + ID_B1 SINE B4 85 205 -19 2 749 1403 94 5 20 chr9 21507038 21507234 -102568938 - B2_Mm1a SINE B2 0 193 1 2 749 371 336 53 0 chr9 21507965 21508078 -102568094 + B4A SINE B4 173 291 -1 2 749 631 250 176 0 chr9 21508398 21508424 -102567748 - B3 SINE B2 -9 207 179 2 749 405 0 0 0 chr9 21508424 21508469 -102567703 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 749 631 250 176 0 chr9 21508469 21508618 -102567554 - B3 SINE B2 -38 178 3 2 749 286 179 213 19 chr9 21508977 21509080 -102567092 + B1F2 SINE Alu 29 149 0 2 749 253 263 18 0 chr9 21509089 21509146 -102567026 + MT2B LTR ERVL 162 219 -382 2 749 696 130 32 8 chr9 21509160 21509284 -102566888 - B1_Mur4 SINE Alu 0 150 24 2 749 255 286 42 110 chr9 21509300 21509418 -102566754 - PB1D9 SINE Alu 0 120 11 3 749 349 140 18 0 chr9 21509442 21509499 -102566673 + B1_Mus2 SINE Alu 68 125 -22 3 749 791 119 17 8 chr9 21509546 21509665 -102566507 + PB1D9 SINE Alu 1 120 0 3 749 207 0 0 0 chr9 21509665 21509688 -102566484 + (A)n Simple_repeat Simple_repeat 1 23 0 3 749 826 215 125 5 chr9 21509696 21509888 -102566284 + B3 SINE B2 1 215 -1 3 749 268 310 248 0 chr9 21509895 21510008 -102566164 + B1_Mur2 SINE Alu 1 141 -8 3 749 427 312 0 0 chr9 21510025 21510137 -102566035 + RSINE1 SINE B4 2 113 -52 3 749 547 178 453 14 chr9 21510305 21510453 -102565719 + B3 SINE B2 3 215 -1 3 749 741 149 30 0 chr9 21510758 21510892 -102565280 + B1_Mur3 SINE Alu 12 149 0 3 749 225 154 0 0 chr9 21510893 21510932 -102565240 + GA-rich Low_complexity Low_complexity 2 40 0 3 749 1009 112 14 0 chr9 21511620 21511763 -102564409 + B1_Mus1 SINE Alu 1 145 -3 4 749 23 68 0 0 chr9 21511765 21511809 -102564363 + AT_rich Low_complexity Low_complexity 1 44 0 4 749 677 195 8 0 chr9 21511817 21511935 -102564237 + PB1D9 SINE Alu 2 120 0 4 749 804 171 44 0 chr9 21512016 21512174 -102563998 - RLTR14 LTR ERV1 -216 166 2 4 749 675 306 0 6 chr9 21512192 21512353 -102563819 - RLTR33 LTR ERVK 0 678 519 4 749 1046 41 7 46 chr9 21512380 21512469 -102563703 - B1_Mus1 SINE Alu 0 148 65 4 749 1959 144 139 11 chr9 21512469 21512828 -102563344 + RLTR44A LTR ERVK 1 405 0 4 749 1046 41 7 46 chr9 21512828 21512890 -102563282 - B1_Mus1 SINE Alu -84 64 3 4 749 480 214 10 0 chr9 21512892 21512990 -102563182 - RLTR33 LTR ERVK -146 532 434 4 749 1448 79 0 0 chr9 21512992 21513170 -102563002 + B2_Mm2 SINE B2 2 179 -16 4 749 1174 83 0 0 chr9 21513175 21513320 -102562852 - B1_Mus2 SINE Alu -1 146 2 4 749 1461 89 0 10 chr9 21513323 21513516 -102562656 - B2_Mm2 SINE B2 -3 192 2 4 749 180 0 0 0 chr9 21513517 21513537 -102562635 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 749 1458 71 0 6 chr9 21513537 21513720 -102562452 - B2_Mm2 SINE B2 -13 182 1 5 749 500 186 40 96 chr9 21513743 21513868 -102562304 - B1_Mus1 SINE Alu 0 148 31 5 749 245 258 176 29 chr9 21513889 21514025 -102562147 - B4A SINE B4 -135 157 2 5 749 397 176 143 0 chr9 21514358 21514449 -102561723 - B1_Mur2 SINE Alu -13 136 33 5 749 746 209 7 14 chr9 21514493 21514634 -102561538 + B1_Mus1 SINE Alu 2 141 -7 5 749 442 321 14 43 chr9 21514674 21514814 -102561358 - RSINE1 SINE B4 -21 144 9 5 749 238 292 28 0 chr9 21514852 21514924 -102561248 + B2_Mm2 SINE B2 7 80 -115 5 749 7301 45 5 28 chr9 21514924 21515837 -102560335 - MMERVK10C-int LTR ERVK -1 7580 6690 5 749 216 0 0 0 chr9 21515837 21515861 -102560311 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 749 7301 45 5 28 chr9 21515861 21515899 -102560273 - MMERVK10C-int LTR ERVK -892 6689 6652 5 749 2688 98 7 5 chr9 21515890 21516304 -102559868 - MMERVK10C-int LTR ERVK -1771 5810 5002 5 749 437 303 41 36 chr9 21516314 21516533 -102559639 - MMERVK10C-int LTR ERVK -6015 1566 1347 5 749 2277 31 119 9 chr9 21516528 21516865 -102559307 - MMERVK10C-int LTR ERVK -1074 913 553 5 749 242 125 68 27 chr9 21516865 21516939 -102559233 + CT-rich Low_complexity Low_complexity 3 79 0 6 749 1907 53 14 54 chr9 21517015 21517085 -102559087 - MMERVK10C-int LTR ERVK -7314 267 208 6 749 1682 26 5 0 chr9 21517085 21517276 -102558896 - B2_Mm1t SINE B2 0 193 2 6 749 1907 53 14 54 chr9 21517276 21517483 -102558689 - MMERVK10C-int LTR ERVK -7374 207 1 6 749 2206 34 0 154 chr9 21517483 21517828 -102558344 - RLTR10B LTR ERVK 0 292 1 6 749 234 0 0 0 chr9 21517915 21517941 -102558231 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 749 707 156 86 36 chr9 21517996 21518136 -102558036 + B1_Mus1 SINE Alu 2 148 0 6 749 716 114 42 0 chr9 21518221 21518388 -102557784 + CT-rich Low_complexity Low_complexity 2 175 0 6 749 297 0 0 0 chr9 21518389 21518422 -102557750 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 749 389 301 24 24 chr9 21518537 21518663 -102557509 + RSINE1 SINE B4 3 128 -37 6 749 1297 27 0 0 chr9 21518804 21518951 -102557221 + B1_Mus2 SINE Alu 1 147 0 6 749 705 254 28 6 chr9 21519510 21519688 -102556484 + MTEa LTR MaLR 23 204 -175 6 749 1210 48 7 0 chr9 21520159 21520305 -102555867 - B1_Mm SINE Alu 0 147 1 7 749 259 261 40 80 chr9 21520377 21520477 -102555695 + B1F SINE Alu 1 96 -53 7 749 869 196 0 6 chr9 21520489 21520648 -102555524 + B3 SINE B2 3 160 -56 7 749 327 164 30 0 chr9 21520647 21520714 -102555458 - B1_Mus2 SINE Alu -34 113 45 7 749 504 216 19 10 chr9 21520754 21520857 -102555315 + PB1D10 SINE Alu 1 104 -13 7 749 468 296 11 95 chr9 21520858 21521048 -102555124 + B4A SINE B4 2 175 -117 7 749 529 155 164 0 chr9 21521063 21521179 -102554993 + B1_Mus1 SINE Alu 14 148 0 7 749 34 24 0 0 chr9 21521186 21521227 -102554945 + AT_rich Low_complexity Low_complexity 1 41 0 7 749 609 190 25 101 chr9 21521228 21521253 -102554919 - B1_Mur4 SINE Alu 0 150 126 7 749 1076 64 50 0 chr9 21521253 21521393 -102554779 + B1_Mus2 SINE Alu 1 147 0 7 749 609 190 25 101 chr9 21521393 21521525 -102554647 - B1_Mur4 SINE Alu -25 125 5 7 749 498 210 96 20 chr9 21521528 21521674 -102554498 - B3A SINE B2 0 198 42 8 749 718 206 21 7 chr9 21521710 21521852 -102554320 - B1_Mur1 SINE Alu -1 148 5 8 749 456 104 0 0 chr9 21521870 21521937 -102554235 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 8 749 648 206 26 40 chr9 21522044 21522196 -102553976 - B1_Mur4 SINE Alu 0 150 1 8 749 26 50 0 0 chr9 21522434 21522474 -102553698 + AT_rich Low_complexity Low_complexity 1 40 0 8 749 315 279 53 26 chr9 21522613 21522630 -102553542 + B4A SINE B4 78 94 -198 8 749 682 292 23 23 chr9 21522630 21522851 -102553321 + ID_B1 SINE B4 3 223 -1 8 749 773 48 0 0 chr9 21522856 21522959 -102553213 + B1_Mus1 SINE Alu 14 116 -32 8 749 351 0 0 0 chr9 21522959 21522998 -102553174 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 749 447 224 8 17 chr9 21522998 21523012 -102553160 + ID_B1 SINE B4 196 209 -15 8 749 445 129 47 0 chr9 21523011 21523096 -102553076 + PB1D9 SINE Alu 31 119 -1 8 749 294 156 58 105 chr9 21523153 21523239 -102552933 + RLTR25B LTR ERVK 428 509 -519 9 749 349 149 0 98 chr9 21523165 21523247 -102552925 + MT2B LTR ERVL 191 264 -337 9 749 833 28 0 0 chr9 21523176 21523282 -102552890 + B1_Mus2 SINE Alu 42 147 0 9 749 1715 181 89 13 chr9 21523341 21523722 -102552450 - MTC LTR MaLR -8 413 4 9 749 439 322 41 86 chr9 21523729 21524021 -102552151 + B4A SINE B4 12 290 -2 9 749 1016 67 22 7 chr9 21524151 21524286 -102551886 + B1_Mus2 SINE Alu 1 137 -10 9 749 561 95 24 0 chr9 21524288 21524372 -102551800 - MTC LTR MaLR -333 88 3 9 749 207 0 0 0 chr9 21524392 21524415 -102551757 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 9 749 205 218 0 25 chr9 21524422 21524502 -102551670 + GA-rich Low_complexity Low_complexity 1 78 0 9 749 728 149 28 11 chr9 21524799 21524975 -102551197 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 749 428 180 34 39 chr9 21525000 21525179 -102550993 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 749 1229 48 7 0 chr9 21525203 21525348 -102550824 + B1_Mus2 SINE Alu 2 147 0 1 749 258 217 33 0 chr9 21525767 21525827 -102550345 + AluG_3 SINE Alu 162 223 -88 1 749 284 329 0 0 chr9 21526003 21526076 -102550096 + B4A SINE B4 220 292 0 1 749 640 139 178 25 chr9 21526118 21526236 -102549936 + B1_Mur2 SINE Alu 4 139 -10 1 749 243 0 0 0 chr9 21526236 21526263 -102549909 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 749 364 238 98 8 chr9 21526313 21526436 -102549736 - ID_B1 SINE B4 -37 187 54 1 749 262 235 149 23 chr9 21526582 21526669 -102549503 - RSINE1 SINE B4 -67 98 1 1 749 803 118 43 35 chr9 21527023 21527164 -102549008 + B1_Mus2 SINE Alu 6 147 0 1 749 202 135 38 19 chr9 21527177 21527230 -102548942 + A-rich Low_complexity Low_complexity 3 56 0 1 749 392 210 95 11 chr9 21527236 21527341 -102548831 - B1_Mur1 SINE Alu -12 137 25 1 749 628 173 59 59 chr9 21527452 21527587 -102548585 - RSINE1 SINE B4 -28 137 3 1 749 601 250 79 6 chr9 21529159 21529336 -102546836 - ID_B1 SINE B4 -8 216 27 1 749 525 214 10 0 chr9 21529503 21529606 -102546566 + PB1D9 SINE Alu 1 104 -16 1 749 1145 74 0 45 chr9 21529936 21530091 -102546081 + B1_Mus1 SINE Alu 1 148 0 1 749 208 206 0 0 chr9 21530091 21530125 -102546047 + polypurine Low_complexity Low_complexity 3 36 0 1 749 243 291 38 28 chr9 21530228 21530334 -102545838 + B4A SINE B4 180 286 -6 1 749 269 181 59 96 chr9 21530512 21530615 -102545557 - B1F SINE Alu 0 149 40 1 749 1223 47 0 13 chr9 21531484 21531634 -102544538 + B1_Mus1 SINE Alu 1 148 0 1 749 767 181 43 0 chr9 21531976 21532114 -102544058 - B1F SINE Alu -5 144 1 1 749 203 125 0 24 chr9 21532199 21532240 -102543932 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 749 1037 71 0 0 chr9 21532240 21532380 -102543792 - B1_Mur4 SINE Alu 0 150 11 1 749 550 225 56 76 chr9 21532242 21532439 -102543733 - B4 SINE B4 -69 223 31 1 749 360 0 0 0 chr9 21532475 21532515 -102543657 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 749 1971 165 112 20 chr9 21532562 21533026 -102543146 - RMER4B LTR ERVK 0 466 7 1 749 480 162 152 0 chr9 21533152 21533251 -102542921 - B1_Mm SINE Alu -33 114 1 1 749 293 250 126 55 chr9 21533417 21533544 -102542628 - B1_Mur3 SINE Alu 0 149 14 1 749 422 216 224 19 chr9 21533576 21533732 -102542440 - ID_B1 SINE B4 -1 223 36 1 749 467 100 135 39 chr9 21534285 21534389 -102541783 + B1_Mus2 SINE Alu 34 147 0 1 749 564 192 130 0 chr9 21534392 21534538 -102541634 + Lx4B LINE L1 6889 7053 -5 1 749 3045 215 128 77 chr9 21534597 21535656 -102540516 - Lx7 LINE L1 -4 7692 6581 1 749 602 214 16 25 chr9 21535666 21535800 -102540372 + B1_Mur1 SINE Alu 11 144 -5 1 749 31 36 0 18 chr9 21535800 21535819 -102540353 + AT_rich Low_complexity Low_complexity 1 19 0 1 749 1183 48 0 26 chr9 21535819 21535970 -102540202 + B1_Mus2 SINE Alu 1 147 0 1 749 31 36 0 18 chr9 21535970 21536006 -102540166 + AT_rich Low_complexity Low_complexity 1 36 0 1 749 279 186 91 23 chr9 21536364 21536452 -102539720 - ZP3AR Satellite Satellite -75 137 44 1 749 432 0 0 0 chr9 21536642 21536690 -102539482 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 749 321 278 0 0 chr9 21536909 21537071 -102539101 + (TG)n Simple_repeat Simple_repeat 1 162 0 1 749 1226 55 0 0 chr9 21537369 21537514 -102538658 + B1_Mus1 SINE Alu 2 146 -2 1 749 259 319 0 0 chr9 21538425 21538497 -102537675 + B4A SINE B4 3 74 -218 1 749 252 236 178 16 chr9 21538510 21538639 -102537533 + B4A SINE B4 130 279 -13 1 749 21 0 0 0 chr9 21538643 21538664 -102537508 + AT_rich Low_complexity Low_complexity 1 21 0 1 749 522 205 188 0 chr9 21538676 21538793 -102537379 + B1_Mur2 SINE Alu 2 140 -9 1 749 350 196 32 130 chr9 21538816 21538830 -102537342 + MT2B LTR ERVL 154 155 -446 1 749 717 53 8 58 chr9 21538830 21538950 -102537222 + B1_Mus1 SINE Alu 2 115 -33 1 749 234 0 0 0 chr9 21538950 21538976 -102537196 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1 749 1859 166 87 3 chr9 21539067 21539412 -102536760 - ORR1D1 LTR MaLR 0 374 1 1 749 551 279 13 13 chr9 21539459 21539615 -102536557 - RSINE1 SINE B4 -7 158 3 1 749 591 86 0 79 chr9 21539942 21540043 -102536129 - B1_Mus2 SINE Alu -1 146 54 1 749 279 113 0 0 chr9 21540061 21540114 -102536058 + (T)n Simple_repeat Simple_repeat 1 53 0 1 749 303 295 77 0 chr9 21540224 21540302 -102535870 - ID_B1 SINE B4 -102 122 39 1 749 250 308 32 21 chr9 21540397 21540490 -102535682 - RSINE1 SINE B4 -53 112 19 1 749 1525 58 11 0 chr9 21540536 21540726 -102535446 + B2_Mm1t SINE B2 2 193 0 1 749 383 248 124 0 chr9 21540770 21540875 -102535297 + ID_B1 SINE B4 71 188 -36 1 749 371 216 85 38 chr9 21540785 21540891 -102535281 + PB1D10 SINE Alu 7 117 0 1 749 290 294 45 27 chr9 21541036 21541148 -102535024 + PB1D10 SINE Alu 2 115 -2 1 749 296 264 83 165 chr9 21541278 21541380 -102534792 + ID_B1 SINE B4 5 204 -20 1 749 410 233 86 0 chr9 21541380 21541496 -102534676 + B1F1 SINE Alu 4 129 -20 1 749 322 196 41 52 chr9 21541491 21541588 -102534584 - ZP3AR Satellite Satellite -71 141 46 1 749 726 239 0 78 chr9 21542001 21542205 -102533967 + B3A SINE B2 10 197 -1 1 749 196 368 0 0 chr9 21542471 21542558 -102533614 + MIR SINE MIR 113 199 -63 1 749 698 253 88 10 chr9 21542654 21542846 -102533326 + ID_B1 SINE B4 16 222 -2 1 749 486 248 78 0 chr9 21542854 21542983 -102533189 + B1_Mus1 SINE Alu 10 148 0 1 749 209 186 26 79 chr9 21543430 21543506 -102532666 + (GGCTG)n Simple_repeat Simple_repeat 3 74 0 1 749 195 69 0 0 chr9 21544530 21544559 -102531613 + (A)n Simple_repeat Simple_repeat 1 29 0 1 749 360 0 0 0 chr9 21544640 21544680 -102531492 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 749 517 191 11 0 chr9 21544693 21544787 -102531385 - B1_Mus1 SINE Alu -38 110 16 1 749 330 261 75 11 chr9 21544888 21544981 -102531191 + RSINE1 SINE B4 15 113 -52 1 749 283 229 41 10 chr9 21545034 21545131 -102531041 + ID_B1 SINE B4 1 100 -124 1 749 242 122 0 39 chr9 21545260 21545273 -102530899 + polypurine Low_complexity Low_complexity 3 14 0 1 749 1411 85 37 0 chr9 21545273 21545461 -102530711 + B2_Mm2 SINE B2 1 195 0 1 749 242 122 0 39 chr9 21545461 21545472 -102530700 + polypurine Low_complexity Low_complexity 15 25 0 1 749 1188 81 0 0 chr9 21545472 21545620 -102530552 + B1_Mus1 SINE Alu 1 148 0 1 749 242 122 0 39 chr9 21545620 21545645 -102530527 + polypurine Low_complexity Low_complexity 26 50 0 1 749 564 236 0 0 chr9 21545729 21545839 -102530333 - RSINE1 SINE B4 -54 111 2 1 749 1231 48 0 0 chr9 21545877 21546023 -102530149 - B1_Mus2 SINE Alu 0 147 2 1 749 257 190 86 0 chr9 21546470 21546528 -102529644 + B4 SINE B4 36 98 -194 1 749 189 0 0 0 chr9 21547352 21547373 -102528799 + (ATTG)n Simple_repeat Simple_repeat 3 23 0 1 749 413 180 67 0 chr9 21547438 21547527 -102528645 + B4A SINE B4 133 227 -65 1 749 599 232 42 35 chr9 21547529 21547672 -102528500 + B1_Mus1 SINE Alu 5 148 0 1 749 1532 57 5 10 chr9 21547673 21547867 -102528305 + B2_Mm1a SINE B2 1 193 0 1 749 1706 36 0 0 chr9 21547881 21548073 -102528099 + B2_Mm1t SINE B2 2 193 0 1 749 260 243 13 26 chr9 21548077 21548153 -102528019 + B4A SINE B4 216 290 -2 1 749 236 303 39 29 chr9 21549061 21549163 -102527009 - MLT1A1 LTR MaLR 0 408 306 1 749 967 82 52 0 chr9 21549267 21549401 -102526771 - B1_Mus1 SINE Alu -6 142 2 1 749 605 111 246 8 chr9 21549404 21549522 -102526650 - B1_Mus1 SINE Alu -2 146 1 1 749 618 124 82 44 chr9 21549678 21549813 -102526359 + B1_Mur2 SINE Alu 9 148 -1 1 749 505 244 24 0 chr9 21550442 21550565 -102525607 - RSINE1 SINE B4 -33 132 7 1 749 274 244 0 114 chr9 21551049 21551137 -102525035 + B1_Mur1 SINE Alu 66 143 -6 1 749 305 308 138 83 chr9 21551144 21551289 -102524883 + B4 SINE B4 71 223 -69 1 749 686 180 86 0 chr9 21551162 21551290 -102524882 + B1_Mus2 SINE Alu 8 146 -1 1 749 321 268 0 11 chr9 21551333 21551420 -102524752 - PB1D10 SINE Alu -9 108 23 1 749 261 155 65 78 chr9 21551836 21551913 -102524259 + ZP3AR Satellite Satellite 47 122 -90 1 749 987 159 19 0 chr9 21552053 21552210 -102523962 + B3 SINE B2 3 162 -54 1 749 222 37 0 0 chr9 21552226 21552253 -102523919 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 749 426 151 0 0 chr9 21552273 21552346 -102523826 + GA-rich Low_complexity Low_complexity 1 73 0 1 749 284 48 0 23 chr9 21553608 21553651 -102522521 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1 749 387 229 112 19 chr9 21553776 21553883 -102522289 + PB1D9 SINE Alu 4 120 0 1 749 283 264 121 58 chr9 21554475 21554648 -102521524 - B4A SINE B4 -2 290 107 1 749 968 243 61 93 chr9 21554814 21555159 -102521013 + RMER10B LTR ERVL 1 334 -64 1 749 270 0 0 0 chr9 21555396 21555426 -102520746 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 749 552 130 22 0 chr9 21555437 21555529 -102520643 + B2_Mm1t SINE B2 78 171 -22 1 749 1152 51 0 7 chr9 21555532 21555671 -102520501 + B1_Mus2 SINE Alu 1 138 -9 1 749 183 271 34 0 chr9 21555763 21555822 -102520350 + MIRm SINE MIR 49 109 -167 1 749 726 161 14 7 chr9 21556156 21556294 -102519878 - B1_Mus2 SINE Alu 0 147 9 2 749 345 250 56 56 chr9 21556203 21556364 -102519808 - MT2B LTR ERVL -345 256 96 2 749 645 299 12 0 chr9 21556320 21556484 -102519688 + ID_B1 SINE B4 52 217 -7 2 749 198 0 0 0 chr9 21557428 21557450 -102518722 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 2 749 294 281 74 67 chr9 21557616 21557765 -102518407 + RSINE1 SINE B4 15 164 -1 2 749 1559 57 16 0 chr9 21557920 21558112 -102518060 - B2_Mm2 SINE B2 0 195 1 2 749 557 250 90 18 chr9 21558821 21558988 -102517184 - B3 SINE B2 -11 205 27 2 749 282 225 70 0 chr9 21559012 21559083 -102517089 - RSINE1 SINE B4 -87 78 3 2 749 237 219 187 103 chr9 21559284 21559391 -102516781 + MER20 DNA MER1_type 29 144 -75 2 749 777 171 95 0 chr9 21559653 21559811 -102516361 + B3 SINE B2 1 173 -43 2 749 1119 56 171 18 chr9 21559877 21560041 -102516131 - B2_Mm2 SINE B2 -6 189 1 2 749 197 77 51 0 chr9 21560052 21560091 -102516081 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 749 1325 20 0 0 chr9 21560092 21560239 -102515933 - B1_Mus2 SINE Alu 0 147 1 2 749 1005 185 52 24 chr9 21560268 21560478 -102515694 + B3 SINE B2 1 216 0 2 749 312 175 15 45 chr9 21560780 21560846 -102515326 - PB1D7 SINE Alu -33 87 24 2 749 453 268 71 0 chr9 21560877 21561004 -102515168 - RSINE1 SINE B4 0 165 30 2 749 374 308 82 41 chr9 21561042 21561164 -102515008 + B1F1 SINE Alu 2 128 -21 2 749 623 158 60 73 chr9 21561334 21561484 -102514688 - B1_Mur3 SINE Alu -1 148 1 2 749 221 300 75 0 chr9 21561926 21562006 -102514166 - BC1_Mm scRNA scRNA -66 86 1 2 749 636 108 57 16 chr9 21561972 21562095 -102514077 - ZP3AR Satellite Satellite -77 135 8 2 749 244 350 10 10 chr9 21562428 21562526 -102513646 + PB1D10 SINE Alu 3 100 -17 2 749 416 212 0 0 chr9 21562566 21562646 -102513526 + RSINE1 SINE B4 37 116 -49 2 749 227 262 16 0 chr9 21562667 21562728 -102513444 - tRNA-Thr-ACG_ tRNA tRNA -10 67 6 2 749 407 284 39 10 chr9 21562874 21562977 -102513195 - PB1 SINE Alu -10 117 12 2 749 253 317 58 97 chr9 21562977 21563080 -102513092 - ID_B1 SINE B4 -11 213 16 2 749 336 330 11 0 chr9 21563139 21563233 -102512939 - B1F SINE Alu -45 104 10 2 749 567 198 74 8 chr9 21563264 21563386 -102512786 - RSINE1 SINE B4 -33 132 3 2 749 227 255 0 0 chr9 21563583 21563634 -102512538 - ID SINE ID -143 81 31 2 749 1156 49 14 14 chr9 21563901 21564047 -102512125 + B1_Mus2 SINE Alu 2 147 0 2 749 206 77 25 25 chr9 21564937 21564977 -102511195 + (CGGGGG)n Simple_repeat Simple_repeat 5 44 0 2 749 350 221 11 44 chr9 21565287 21565377 -102510795 - PB1D9 SINE Alu -25 95 9 2 749 671 205 135 24 chr9 21565409 21565579 -102510593 - B3 SINE B2 0 216 28 2 749 547 165 21 0 chr9 21565577 21565674 -102510498 + B1_Mm SINE Alu 37 135 -12 2 749 180 0 0 0 chr9 21565675 21565695 -102510477 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2 749 219 254 0 16 chr9 21565729 21565793 -102510379 + PB1D7 SINE Alu 33 95 -25 2 749 372 231 171 0 chr9 21565805 21565922 -102510250 + B1F SINE Alu 1 137 -12 2 749 1151 99 0 173 chr9 21565941 21566087 -102510085 + B2_Mm2 SINE B2 2 110 -85 2 749 1100 72 7 0 chr9 21566087 21566225 -102509947 - B1_Mus1 SINE Alu -9 139 1 2 749 1151 99 0 173 chr9 21566225 21566309 -102509863 + B2_Mm2 SINE B2 111 192 -3 2 749 588 293 31 25 chr9 21567121 21567317 -102508855 + ID_B1 SINE B4 28 224 0 2 749 696 279 11 11 chr9 21567352 21567537 -102508635 + B3A SINE B2 4 188 -10 2 749 425 307 6 136 chr9 21567565 21567665 -102508507 + B4A SINE B4 2 88 -204 2 749 1590 32 5 5 chr9 21567665 21567851 -102508321 - B2_Mm1a SINE B2 -7 186 1 2 749 425 307 6 136 chr9 21567851 21567912 -102508260 + B4A SINE B4 89 142 -150 2 749 782 224 108 85 chr9 21567915 21568310 -102507862 + RMER2 LTR ERV1 5 540 -27 2 749 253 201 0 81 chr9 21568327 21568412 -102507760 + B1_Mur2 SINE Alu 46 148 -1 2 749 253 285 28 103 chr9 21568471 21568616 -102507556 + B4A SINE B4 159 292 0 2 749 402 246 0 0 chr9 21568625 21568792 -102507380 + (CA)n Simple_repeat Simple_repeat 2 168 0 2 749 401 229 114 0 chr9 21568826 21568957 -102507215 + L1MB2 LINE L1 5978 6123 -48 2 749 712 230 69 155 chr9 21569122 21569317 -102506855 + B3 SINE B2 2 178 -38 2 749 1233 34 0 14 chr9 21569317 21569465 -102506707 - B1_Mus2 SINE Alu 0 147 2 2 749 712 230 69 155 chr9 21569465 21569501 -102506671 + B3 SINE B2 179 213 -3 2 749 359 270 74 62 chr9 21569507 21569519 -102506653 - B3A SINE B2 -3 195 187 2 749 1379 62 79 0 chr9 21569519 21569678 -102506494 + B2_Mm1t SINE B2 2 160 -33 2 749 315 0 0 0 chr9 21569678 21569713 -102506459 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 749 1379 62 79 0 chr9 21569713 21569730 -102506442 + B2_Mm1t SINE B2 161 190 -3 2 749 544 242 69 29 chr9 21569730 21569879 -102506293 - B3 SINE B2 -12 186 32 2 749 231 61 0 0 chr9 21569885 21569918 -102506254 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 749 1635 17 0 6 chr9 21569918 21570095 -102506077 - B2_Mm1a SINE B2 -11 182 6 2 749 273 236 39 106 chr9 21570121 21570225 -102505947 + RSINE1 SINE B4 2 98 -67 2 749 355 212 35 0 chr9 21570231 21570316 -102505856 + ID SINE ID 2 89 -135 2 749 418 259 75 22 chr9 21570322 21570456 -102505716 + B3 SINE B2 1 141 -75 2 749 396 0 0 0 chr9 21570459 21570503 -102505669 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 749 438 69 0 0 chr9 21570503 21570561 -102505611 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 749 209 137 19 56 chr9 21570598 21570621 -102505551 + A-rich Low_complexity Low_complexity 2 25 0 2 749 183 42 0 0 chr9 21570621 21570645 -102505527 + (C)n Simple_repeat Simple_repeat 1 24 0 2 749 209 137 19 56 chr9 21570645 21570675 -102505497 + A-rich Low_complexity Low_complexity 26 52 0 2 749 406 198 57 38 chr9 21570703 21570808 -102505364 + PB1D10 SINE Alu 10 116 -1 2 749 298 119 56 69 chr9 21570822 21570894 -102505278 + B3A SINE B2 1 71 -127 2 749 650 247 6 6 chr9 21571034 21571112 -102505060 + ID SINE ID 3 80 -144 2 749 341 226 64 11 chr9 21571112 21571206 -102504966 + PB1D7 SINE Alu 1 99 -21 2 749 731 206 6 0 chr9 21571694 21571869 -102504303 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 2 749 459 125 0 0 chr9 21572662 21572734 -102503438 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 749 240 35 0 0 chr9 21572734 21572762 -102503410 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 749 359 206 20 61 chr9 21573955 21574053 -102502119 - ZP3AR Satellite Satellite -70 142 49 2 749 257 200 63 51 chr9 21574053 21574132 -102502040 - B1F SINE Alu -2 147 68 2 749 336 325 122 24 chr9 21574754 21574955 -102501217 + L1ME1 LINE L1 5652 5861 -323 2 749 279 0 0 0 chr9 21574967 21574998 -102501174 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 749 207 114 0 0 chr9 21575007 21575042 -102501130 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 749 1188 61 0 20 chr9 21575168 21575318 -102500854 - B1_Mus2 SINE Alu 0 147 1 2 749 1435 79 11 0 chr9 21575386 21575575 -102500597 + B2_Mm1a SINE B2 2 192 -1 2 749 186 189 0 0 chr9 21575652 21575689 -102500483 + (CAT)n Simple_repeat Simple_repeat 3 39 0 2 749 536 244 23 16 chr9 21575703 21575832 -102500340 - ID_B1 SINE B4 -3 221 92 2 749 271 207 88 36 chr9 21575996 21576084 -102500088 + B3A SINE B2 2 94 -122 2 749 1448 23 97 0 chr9 21576141 21576316 -102499856 + B2_Mm1a SINE B2 1 192 -1 2 749 223 222 75 100 chr9 21576366 21576446 -102499726 + ID4_ SINE ID 6 83 0 2 749 623 209 0 0 chr9 21576459 21576574 -102499598 + PB1D9 SINE Alu 1 115 -5 2 749 547 200 141 49 chr9 21576596 21576780 -102499392 + B4 SINE B4 20 220 -72 2 749 556 194 10 0 chr9 21577023 21577126 -102499046 + RSINE1 SINE B4 2 105 -60 2 749 31 0 0 0 chr9 21577529 21577560 -102498612 + AT_rich Low_complexity Low_complexity 1 31 0 2 749 275 299 165 6 chr9 21577578 21577736 -102498436 - B3A SINE B2 -15 183 1 2 749 436 252 130 0 chr9 21577764 21577887 -102498285 - RSINE1 SINE B4 -17 148 10 2 749 343 247 14 0 chr9 21577926 21577999 -102498173 - B4A SINE B4 -3 289 216 2 749 294 201 59 0 chr9 21577999 21578014 -102498158 - ID_B1 SINE B4 -76 148 105 2 749 344 100 0 0 chr9 21578014 21578064 -102498108 - B1_Mus2 SINE Alu -96 51 2 2 749 1155 102 0 0 chr9 21578092 21578239 -102497933 - B1_Mus2 SINE Alu 0 147 1 2 749 225 288 49 12 chr9 21578247 21578328 -102497844 - B4A SINE B4 -205 87 4 2 749 334 259 5 28 chr9 21579301 21579412 -102496760 + PB1D10 SINE Alu 3 117 -3 2 749 588 133 18 45 chr9 21579415 21579525 -102496647 + B1F2 SINE Alu 42 148 -1 2 749 556 221 58 22 chr9 21579526 21579665 -102496507 + ID_B1 SINE B4 81 224 0 2 749 946 49 0 0 chr9 21579670 21579793 -102496379 + B1_Mus1 SINE Alu 26 148 0 2 749 180 0 0 0 chr9 21580311 21580331 -102495841 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2 749 1749 16 0 0 chr9 21580346 21580538 -102495634 - B2_Mm1a SINE B2 0 193 2 2 749 795 133 85 8 chr9 21580547 21580676 -102495496 - B1_Mus1 SINE Alu -7 141 3 2 749 761 233 198 6 chr9 21580701 21580878 -102495294 - B3 SINE B2 -5 211 1 2 749 991 215 74 15 chr9 21580907 21581110 -102495062 + B3 SINE B2 2 216 0 2 749 2358 102 9 12 chr9 21581121 21581449 -102494723 + ORR1A2 LTR MaLR 1 327 0 2 749 336 282 64 0 chr9 21581462 21581572 -102494600 - B3A SINE B2 -6 192 76 3 749 23 0 0 0 chr9 21581632 21581655 -102494517 + AT_rich Low_complexity Low_complexity 1 23 0 3 749 1027 91 0 0 chr9 21581655 21581798 -102494374 - B1_Mus2 SINE Alu 0 147 5 3 749 1024 91 0 0 chr9 21581824 21581967 -102494205 - B1_Mus2 SINE Alu 0 147 5 3 749 247 313 58 58 chr9 21581873 21581991 -102494181 - RLTR25A LTR ERVK -531 572 454 3 749 1175 55 0 33 chr9 21581991 21582142 -102494030 - B1_Mus2 SINE Alu 0 147 2 3 749 247 313 58 58 chr9 21582142 21582162 -102494010 - RLTR25A LTR ERVK -650 453 434 3 749 669 189 27 27 chr9 21582148 21582295 -102493877 - B3 SINE B2 0 216 70 3 749 1762 162 266 18 chr9 21582292 21582587 -102493585 + RMER15 LTR ERVL 13 393 -182 3 749 1390 65 21 16 chr9 21582587 21582774 -102493398 - B2_Mm2 SINE B2 -6 189 2 3 749 1762 162 266 18 chr9 21582774 21582929 -102493243 + RMER15 LTR ERVL 394 575 0 3 749 372 228 13 0 chr9 21582929 21583008 -102493164 - B3 SINE B2 -135 81 2 3 749 359 200 35 12 chr9 21583096 21583182 -102492990 + ID_B1 SINE B4 110 197 -27 3 749 385 310 18 0 chr9 21583264 21583377 -102492795 + PB1D10 SINE Alu 1 115 -2 3 749 256 404 72 18 chr9 21583381 21583658 -102492514 + B4A SINE B4 1 292 0 3 749 341 109 0 15 chr9 21583716 21583781 -102492391 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 749 631 167 18 0 chr9 21583875 21583989 -102492183 + B1_Mur2 SINE Alu 34 149 0 3 749 236 217 0 0 chr9 21585256 21585302 -102490870 + PB1D7 SINE Alu 75 120 0 3 749 404 234 74 9 chr9 21585314 21585367 -102490805 + ID SINE ID 23 82 -142 3 749 254 315 70 35 chr9 21585367 21585482 -102490690 + PB1D7 SINE Alu 1 119 -1 3 749 303 48 0 0 chr9 21585483 21585525 -102490647 + B2_Mm2 SINE B2 1 42 -153 3 749 1052 58 65 14 chr9 21585525 21585664 -102490508 + B1_Mus2 SINE Alu 2 147 0 3 749 321 173 64 233 chr9 21585724 21585943 -102490229 + B3A SINE B2 1 182 -16 3 749 273 169 0 0 chr9 21585950 21586009 -102490163 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 749 257 213 67 0 chr9 21586209 21586284 -102489888 + B4 SINE B4 9 88 -204 3 749 1035 158 43 0 chr9 21586346 21586530 -102489642 + B2_Mm2 SINE B2 2 193 -2 3 749 255 368 28 0 chr9 21586923 21587029 -102489143 - PB1D7 SINE Alu -6 114 6 3 749 271 307 0 35 chr9 21587096 21587203 -102488969 + (TG)n Simple_repeat Simple_repeat 2 107 0 3 749 1567 43 38 0 chr9 21587203 21587389 -102488783 + B2_Mm2 SINE B2 3 195 0 3 749 271 307 0 35 chr9 21587389 21587395 -102488777 + (TG)n Simple_repeat Simple_repeat 1 5 0 3 749 1497 53 27 0 chr9 21587395 21587582 -102488590 + B2_Mm1a SINE B2 1 192 -1 3 749 271 307 0 35 chr9 21587582 21587609 -102488563 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 749 263 342 101 60 chr9 21587614 21587813 -102488359 - B4 SINE B4 -3 289 83 3 749 225 250 19 0 chr9 21588121 21588173 -102487999 + ZP3AR Satellite Satellite 43 95 -117 3 749 302 213 40 0 chr9 21588173 21588248 -102487924 + ID4 SINE ID 1 78 -5 3 749 613 229 0 106 chr9 21588321 21588482 -102487690 + B1_Mur1 SINE Alu 6 149 0 3 749 776 171 67 67 chr9 21588764 21588958 -102487214 - B3 SINE B2 -15 201 8 3 749 633 207 42 21 chr9 21588967 21589110 -102487062 - B1_Mur1 SINE Alu -2 147 2 3 749 318 158 232 0 chr9 21589341 21589423 -102486749 - PB1D9 SINE Alu 0 120 20 3 749 364 181 159 19 chr9 21589787 21589897 -102486275 - PB1D9 SINE Alu -24 124 4 3 749 252 309 0 0 chr9 21589897 21589942 -102486230 - ID SINE ID -179 45 1 3 749 280 309 21 0 chr9 21589960 21590057 -102486115 - PB1D10 SINE Alu -18 99 1 3 749 235 291 149 9 chr9 21590090 21590239 -102485933 + RSINE1 SINE B4 2 170 -122 3 749 1186 48 14 0 chr9 21590359 21590504 -102485668 + B1_Mus1 SINE Alu 2 148 0 3 749 243 88 0 0 chr9 21590611 21590645 -102485527 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 3 749 1180 69 0 0 chr9 21590747 21590891 -102485281 + B1_Mus1 SINE Alu 5 148 0 3 749 279 0 0 0 chr9 21590891 21590922 -102485250 + (A)n Simple_repeat Simple_repeat 1 31 0 3 749 1048 131 0 0 chr9 21590991 21591136 -102485036 + B1_Mus1 SINE Alu 4 148 0 3 749 253 196 18 0 chr9 21591268 21591324 -102484848 + RSINE1 SINE B4 3 59 -106 3 749 302 267 0 26 chr9 21591391 21591468 -102484704 + B4A SINE B4 4 78 -214 3 749 566 240 8 30 chr9 21591856 21591989 -102484183 + RSINE1 SINE B4 1 130 -35 3 749 299 292 26 9 chr9 21592264 21592378 -102483794 + PB1D10 SINE Alu 2 117 0 3 749 416 243 154 0 chr9 21592381 21592517 -102483655 + RSINE1 SINE B4 2 158 -7 3 749 341 253 35 0 chr9 21592844 21592931 -102483241 - B3A SINE B2 -108 90 1 3 749 448 243 126 47 chr9 21593012 21593053 -102483119 - MT2B LTR ERVL -243 358 201 3 749 897 95 14 14 chr9 21593053 21593192 -102482980 - B1_Mus1 SINE Alu -3 145 7 3 749 286 177 112 8 chr9 21593091 21593216 -102482956 - ORR1B1-int LTR MaLR -755 754 617 3 749 350 255 0 113 chr9 21593340 21593455 -102482717 - PB1D10 SINE Alu -13 104 3 3 749 265 254 15 185 chr9 21593455 21593484 -102482688 - ID SINE ID -154 70 65 3 749 224 310 80 0 chr9 21593512 21593612 -102482560 + BC1_Mm scRNA scRNA 3 110 -42 3 749 255 295 76 0 chr9 21593679 21593784 -102482388 + PB1D10 SINE Alu 2 114 -3 3 749 447 293 25 0 chr9 21593811 21593886 -102482286 + ID SINE ID 8 86 -138 3 749 319 277 50 0 chr9 21593886 21593987 -102482185 + PB1D10 SINE Alu 4 109 -8 3 749 344 222 271 8 chr9 21594090 21594208 -102481964 + B1F1 SINE Alu 1 149 0 3 749 637 201 34 34 chr9 21594295 21594444 -102481728 - B1_Mur2 SINE Alu 0 149 1 3 749 198 0 0 0 chr9 21594452 21594474 -102481698 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 749 505 232 0 0 chr9 21594958 21595057 -102481115 - B1F1 SINE Alu -50 99 1 3 749 390 282 22 75 chr9 21595057 21595092 -102481080 - ID_B1 SINE B4 -47 177 51 3 749 1590 27 5 31 chr9 21595343 21595536 -102480636 + B2_Mm1a SINE B2 1 188 -5 3 749 496 236 37 19 chr9 21595692 21595800 -102480372 + PB1D9 SINE Alu 3 112 -8 3 749 283 297 60 108 chr9 21595849 21595949 -102480223 - RSINE1 SINE B4 -7 158 63 3 749 722 216 0 75 chr9 21595949 21596109 -102480063 + B1_Mur1 SINE Alu 2 149 0 3 749 283 297 60 108 chr9 21596109 21596174 -102479998 - RSINE1 SINE B4 -103 62 2 3 749 183 80 0 0 chr9 21596279 21596304 -102479868 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 749 217 307 108 23 chr9 21597068 21597198 -102478974 - MIRb SINE MIR -40 228 88 3 749 350 247 0 43 chr9 21597839 21598025 -102478147 + (TATG)n Simple_repeat Simple_repeat 1 178 0 3 749 190 269 0 37 chr9 21598044 21598152 -102478020 + (TATG)n Simple_repeat Simple_repeat 4 107 0 3 749 258 315 0 0 chr9 21598181 21598330 -102477842 + (TG)n Simple_repeat Simple_repeat 2 150 0 3 749 231 314 47 19 chr9 21598336 21598443 -102477729 - B4 SINE B4 0 292 183 3 749 686 259 0 7 chr9 21598437 21598585 -102477587 - RSINE1 SINE B4 -13 152 6 3 749 566 251 78 21 chr9 21598561 21598752 -102477420 - B4A SINE B4 -86 206 5 3 749 742 218 121 10 chr9 21601811 21602010 -102474162 - ID_B1 SINE B4 -1 223 3 3 749 400 211 26 34 chr9 21602040 21602056 -102474116 + PB1D9 SINE Alu 1 42 -85 3 749 293 191 80 93 chr9 21602056 21602131 -102474041 + MT2B LTR ERVL 181 254 -347 3 749 400 211 26 34 chr9 21602131 21602155 -102474017 + PB1D9 SINE Alu 43 113 -14 3 749 23 33 0 0 chr9 21602438 21602468 -102473704 + GC_rich Low_complexity Low_complexity 1 30 0 3 749 277 278 0 0 chr9 21603410 21603482 -102472690 + MIR SINE MIR 114 185 -77 3 749 250 236 97 0 chr9 21603533 21603605 -102472567 - ID4_ SINE ID -3 80 2 3 749 282 227 147 52 chr9 21603660 21603776 -102472396 + ID_B1 SINE B4 98 224 0 3 749 264 59 0 0 chr9 21603794 21603828 -102472344 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 3 749 672 254 74 27 chr9 21603887 21604107 -102472065 + B4A SINE B4 1 230 -62 3 749 586 263 79 0 chr9 21604117 21604269 -102471903 + RSINE1 SINE B4 2 165 0 3 749 294 207 102 112 chr9 21604324 21604422 -102471750 + B1_Mur4 SINE Alu 24 120 0 3 749 288 0 0 0 chr9 21605005 21605037 -102471135 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 749 532 279 0 49 chr9 21605045 21605188 -102470984 - RSINE1 SINE B4 -29 136 1 3 749 227 179 0 0 chr9 21605213 21605252 -102470920 - MIRc SINE MIR -114 154 116 3 749 231 299 73 15 chr9 21605265 21605333 -102470839 + ID4 SINE ID 4 75 -8 3 749 644 230 7 7 chr9 21605351 21605487 -102470685 + RSINE1 SINE B4 9 144 -21 3 749 241 296 14 0 chr9 21607831 21607902 -102468270 - ZP3AR Satellite Satellite -96 116 45 3 749 494 171 171 0 chr9 21607937 21608042 -102468130 - B1F1 SINE Alu -1 148 26 3 749 242 209 0 69 chr9 21608735 21608807 -102467365 + GA-rich Low_complexity Low_complexity 1 67 0 3 749 238 266 0 102 chr9 21609527 21609615 -102466557 - ID SINE ID -139 85 7 3 749 1200 200 24 0 chr9 21609653 21609863 -102466309 + B3 SINE B2 2 216 0 3 749 23 0 0 0 chr9 21609865 21609888 -102466284 + AT_rich Low_complexity Low_complexity 1 23 0 3 749 948 162 0 20 chr9 21609888 21610039 -102466133 + B1_Mus1 SINE Alu 1 148 0 3 749 452 18 18 0 chr9 21610067 21610124 -102466048 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 3 749 628 227 323 22 chr9 21610206 21610512 -102465660 + MTD LTR MaLR 7 405 -14 3 749 638 200 50 29 chr9 21610527 21610666 -102465506 + RSINE1 SINE B4 24 165 0 4 749 475 187 9 9 chr9 21610698 21610811 -102465361 + GA-rich Low_complexity Low_complexity 2 114 0 4 749 494 233 19 39 chr9 21610951 21611107 -102465065 + L1MC1 LINE L1 6104 6256 -77 4 749 444 315 14 14 chr9 21611107 21611255 -102464917 + ID_B1 SINE B4 76 223 -1 4 749 481 279 25 49 chr9 21611500 21611662 -102464510 + RSINE1 SINE B4 8 165 0 4 749 686 232 42 10 chr9 21612061 21612253 -102463919 - ID_B1 SINE B4 -2 222 25 4 749 688 257 68 9 chr9 21612439 21612506 -102463666 - ID_B1 SINE B4 -4 288 158 4 749 466 217 19 9 chr9 21612506 21612613 -102463559 - PB1D10 SINE Alu -9 108 1 4 749 688 257 68 9 chr9 21612613 21612690 -102463482 - ID_B1 SINE B4 -4 157 2 4 749 348 24 0 0 chr9 21612695 21612736 -102463436 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 749 534 229 0 18 chr9 21612738 21612849 -102463323 - B4A SINE B4 -4 288 180 4 749 471 243 192 6 chr9 21612972 21613154 -102463018 - B4A SINE B4 -76 216 1 4 749 251 196 78 0 chr9 21613208 21613259 -102462913 - ID4_ SINE ID -7 76 22 4 749 225 0 0 0 chr9 21613305 21613330 -102462842 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 749 664 279 22 0 chr9 21613348 21613527 -102462645 - ID_B1 SINE B4 0 224 42 4 749 1272 70 0 0 chr9 21613527 21613759 -102462413 + (CCCCAG)n Simple_repeat Simple_repeat 1 232 0 4 749 334 195 59 35 chr9 21613763 21613848 -102462324 - PB1D7 SINE Alu 0 120 34 4 749 487 203 22 169 chr9 21614589 21614706 -102461466 - ID_B1 SINE B4 -1 223 135 4 749 1162 68 0 13 chr9 21614706 21614856 -102461316 - B1_Mus1 SINE Alu 0 148 1 4 749 487 203 22 169 chr9 21614856 21614922 -102461250 - ID_B1 SINE B4 -90 134 67 4 749 859 214 177 14 chr9 21614987 21615294 -102460878 + MTD LTR MaLR 5 404 -15 4 749 995 90 21 0 chr9 21615294 21615438 -102460734 + B1_Mus2 SINE Alu 1 147 0 4 749 182 33 0 62 chr9 21615439 21615471 -102460701 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 749 378 252 88 7 chr9 21615488 21615636 -102460536 - ID_B1 SINE B4 -46 178 19 4 749 198 0 0 0 chr9 21615861 21615883 -102460289 + (T)n Simple_repeat Simple_repeat 1 22 0 4 749 432 243 75 0 chr9 21615982 21616089 -102460083 - RSINE1 SINE B4 -47 118 4 4 749 228 299 0 45 chr9 21616106 21616218 -102459954 + C-rich Low_complexity Low_complexity 5 111 0 4 749 869 256 37 58 chr9 21616379 21616570 -102459602 + B4A SINE B4 1 185 -107 4 749 723 207 29 0 chr9 21616570 21616710 -102459462 + B1_Mur2 SINE Alu 1 144 -5 4 749 869 256 37 58 chr9 21616710 21616812 -102459360 + B4A SINE B4 186 288 -4 4 749 363 254 31 47 chr9 21616859 21616987 -102459185 + B1F1 SINE Alu 4 129 -20 4 749 318 305 38 0 chr9 21617005 21617110 -102459062 + B1F SINE Alu 19 127 -22 4 749 262 276 182 63 chr9 21617148 21617181 -102458991 + ID_B1 SINE B4 64 223 -1 4 749 505 254 0 0 chr9 21617181 21617291 -102458881 + PB1D7 SINE Alu 10 119 -1 4 749 669 110 0 0 chr9 21618179 21618288 -102457884 + (TG)n Simple_repeat Simple_repeat 1 109 0 4 749 237 288 95 120 chr9 21618292 21618333 -102457839 - B4A SINE B4 -29 263 233 4 749 480 264 78 7 chr9 21618333 21618474 -102457698 - RSINE1 SINE B4 -12 153 3 4 749 390 267 96 30 chr9 21618474 21618590 -102457582 - ID_B1 SINE B4 -60 232 106 4 749 215 219 0 0 chr9 21618610 21618651 -102457521 + T-rich Low_complexity Low_complexity 4 44 0 4 749 537 218 97 0 chr9 21618656 21618780 -102457392 - ID_B1 SINE B4 -2 222 87 4 749 206 133 0 0 chr9 21618833 21618863 -102457309 + L2a LINE L2 3378 3407 -19 4 749 300 204 42 83 chr9 21619465 21619561 -102456611 + ZP3AR Satellite Satellite 43 134 -78 4 749 211 357 0 28 chr9 21619522 21619594 -102456578 + ID4 SINE ID 1 70 -13 4 749 731 112 0 8 chr9 21619707 21619824 -102456348 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 4 749 333 202 196 31 chr9 21619827 21619924 -102456248 - PB1D10 SINE Alu 0 117 5 4 749 1894 124 217 0 chr9 21619966 21620289 -102455883 + ORR1B1 LTR MaLR 1 393 -1 4 749 316 200 74 53 chr9 21620637 21620732 -102455440 - PB1D10 SINE Alu -12 105 9 4 749 302 178 65 52 chr9 21620664 21620741 -102455431 - ID_B1 SINE B4 -67 157 80 4 749 275 146 18 0 chr9 21621011 21621066 -102455106 + CT-rich Low_complexity Low_complexity 2 57 0 4 749 1164 85 57 0 chr9 21621166 21621343 -102454829 - B2_Mm2 SINE B2 -8 187 1 4 749 236 284 79 11 chr9 21621353 21621442 -102454730 - PB1D10 SINE Alu -7 110 16 4 749 769 209 161 5 chr9 21622002 21622194 -102453978 - ID_B1 SINE B4 0 224 3 4 749 814 153 7 14 chr9 21622464 21622610 -102453562 + B1_Mus2 SINE Alu 1 145 -2 4 749 1169 54 0 26 chr9 21622976 21623127 -102453045 + B1_Mm SINE Alu 1 147 0 4 749 459 254 39 39 chr9 21623275 21623402 -102452770 + RSINE1 SINE B4 37 163 -2 4 749 593 206 137 0 chr9 21623481 21623612 -102452560 + B1_Mur2 SINE Alu 1 149 0 4 749 725 218 109 0 chr9 21623636 21623801 -102452371 + B3 SINE B2 27 209 -7 4 749 308 328 23 15 chr9 21624030 21624163 -102452009 + (CATA)n Simple_repeat Simple_repeat 3 136 0 4 749 263 286 157 0 chr9 21624209 21624387 -102451785 + L1MEg LINE L1 917 1122 -4962 4 749 941 216 16 0 chr9 21625421 21625611 -102450561 + B3 SINE B2 10 202 -14 4 749 670 193 44 0 chr9 21626437 21626572 -102449600 - B1_Mm SINE Alu -1 146 6 4 749 293 304 28 38 chr9 21626628 21626734 -102449438 + MLT1J2 LTR MaLR 40 144 -304 4 750 262 184 0 20 chr9 21626883 21626933 -102449239 - L2b LINE L2 -3 3372 3324 4 750 423 287 15 20 chr9 21626969 21627092 -102449080 - PB1D10 SINE Alu -194 120 1 4 750 237 167 0 0 chr9 21627096 21627138 -102449034 - PB1D7 SINE Alu -78 42 1 4 750 237 167 0 0 chr9 21627142 21627184 -102448988 - PB1D7 SINE Alu -78 42 1 4 750 683 118 49 118 chr9 21627434 21627578 -102448594 + B1_Mur4 SINE Alu 2 135 -15 4 750 627 214 36 78 chr9 21627585 21627752 -102448420 + B3 SINE B2 14 173 -43 4 750 180 0 0 0 chr9 21627797 21627817 -102448355 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 750 315 0 0 0 chr9 21627817 21627851 -102448321 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 750 757 171 48 35 chr9 21627878 21628023 -102448149 + B1_Mus2 SINE Alu 1 147 0 4 750 307 284 193 28 chr9 21628159 21628340 -102447832 + MIR SINE MIR 42 252 -10 4 750 197 304 18 0 chr9 21628440 21628496 -102447676 - MIRm SINE MIR -9 267 211 4 750 303 337 29 0 chr9 21628656 21628777 -102447395 + L2b LINE L2 3264 3421 -5 4 750 452 242 86 31 chr9 21629378 21629540 -102446632 - B4A SINE B4 -120 172 2 4 750 229 118 59 0 chr9 21630518 21630569 -102445603 - FAM SINE Alu 0 315 262 4 750 337 23 0 0 chr9 21630528 21630571 -102445601 - ID_B1 SINE B4 0 224 182 4 750 345 237 20 10 chr9 21630575 21630673 -102445499 + MLT1A LTR MaLR 63 161 -213 4 750 195 162 0 0 chr9 21630779 21630816 -102445356 + GA-rich Low_complexity Low_complexity 6 42 0 4 750 550 239 0 17 chr9 21631090 21631205 -102444967 + PB1D10 SINE Alu 3 115 -2 4 750 1593 57 0 0 chr9 21631935 21632128 -102444044 + B2_Mm1t SINE B2 1 193 0 4 750 1123 192 33 19 chr9 21632137 21632349 -102443823 + B3 SINE B2 1 215 -1 4 750 574 247 113 0 chr9 21632497 21632647 -102443525 - ID_B1 SINE B4 -55 169 3 4 750 473 217 96 0 chr9 21632773 21632888 -102443284 - ID_B1 SINE B4 -1 223 98 4 750 760 208 21 0 chr9 21633306 21633450 -102442722 - B1_Mur1 SINE Alu -2 147 1 4 750 1240 28 14 0 chr9 21633491 21633635 -102442537 - B1_Mm SINE Alu 0 147 2 4 750 303 300 0 0 chr9 21633647 21633727 -102442445 - ID4_ SINE ID -1 82 3 4 750 290 329 18 23 chr9 21634214 21634385 -102441787 + (TATG)n Simple_repeat Simple_repeat 4 173 0 4 750 238 226 48 0 chr9 21635044 21635106 -102441066 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 4 750 382 252 98 0 chr9 21636778 21636901 -102439271 + B1F SINE Alu 1 135 -14 4 750 251 294 58 12 chr9 21636920 21637006 -102439166 + RSINE1 SINE B4 44 133 -32 4 750 225 0 0 0 chr9 21637032 21637057 -102439115 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4 750 448 207 0 0 chr9 21638322 21638404 -102437768 + B1_Mur1 SINE Alu 68 149 0 4 750 807 216 115 5 chr9 21638417 21638608 -102437564 - ID_B1 SINE B4 -12 212 1 4 750 484 253 116 17 chr9 21638619 21638792 -102437380 + B2_Mm2 SINE B2 2 191 -4 4 750 408 158 11 58 chr9 21639201 21639288 -102436884 - PB1D10 SINE Alu 0 117 35 4 750 425 246 66 25 chr9 21640673 21640794 -102435378 + ID_B1 SINE B4 98 223 -1 4 750 312 247 122 10 chr9 21640804 21640830 -102435342 + ID_B1 SINE B4 108 135 -89 4 750 465 34 0 0 chr9 21640830 21640889 -102435283 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 750 312 252 119 12 chr9 21640889 21640983 -102435189 + ID_B1 SINE B4 136 244 -48 4 750 264 250 88 50 chr9 21640983 21641063 -102435109 + RSINE1 SINE B4 2 84 -81 4 750 197 375 42 0 chr9 21641115 21641211 -102434961 - MIR SINE MIR -89 173 74 4 750 559 254 64 17 chr9 21642014 21642186 -102433986 + B3A SINE B2 1 180 -18 4 750 285 405 0 0 chr9 21642313 21642486 -102433686 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 750 798 167 83 0 chr9 21642505 21642637 -102433535 + B1_Mur2 SINE Alu 1 143 -6 4 750 279 145 14 28 chr9 21642660 21642676 -102433496 + polypurine Low_complexity Low_complexity 2 17 0 5 750 1244 54 0 0 chr9 21642676 21642823 -102433349 + B1_Mm SINE Alu 1 147 0 5 750 279 145 14 28 chr9 21642823 21642877 -102433295 + GA-rich Low_complexity Low_complexity 18 71 0 5 750 296 268 153 10 chr9 21642889 21642987 -102433185 + RSINE1 SINE B4 11 122 -43 5 750 289 307 0 0 chr9 21643036 21643111 -102433061 + B4 SINE B4 217 291 -1 4 750 243 0 0 0 chr9 21643988 21644015 -102432157 + (CGGGGG)n Simple_repeat Simple_repeat 2 28 0 5 750 690 190 0 0 chr9 21644515 21644636 -102431536 - B1_Mus2 SINE Alu -26 121 1 5 750 272 208 162 27 chr9 21644668 21644742 -102431430 - B3A SINE B2 0 198 115 5 750 523 215 114 15 chr9 21644845 21644977 -102431195 - B1_Mur1 SINE Alu -2 147 3 5 750 226 212 61 0 chr9 21644978 21645044 -102431128 - ID4_ SINE ID -13 70 1 5 750 245 186 0 0 chr9 21645044 21645087 -102431085 - ZP3AR Satellite Satellite -117 95 53 5 750 985 234 79 8 chr9 21645138 21645405 -102430767 + MTD LTR MaLR 5 290 -129 5 750 357 336 7 14 chr9 21645492 21645634 -102430538 + MIR SINE MIR 25 165 -97 5 750 242 206 42 56 chr9 21645818 21645890 -102430282 - PB1D10 SINE Alu -4 113 43 5 750 356 233 29 11 chr9 21646163 21646337 -102429835 + GA-rich Low_complexity Low_complexity 1 177 0 5 750 207 100 0 0 chr9 21646469 21646499 -102429673 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 5 750 676 214 137 0 chr9 21646504 21646686 -102429486 - ID_B1 SINE B4 0 224 18 5 750 510 275 50 0 chr9 21647868 21648028 -102428144 + Tigger5 DNA MER2_type 2125 2292 -114 5 750 642 250 0 7 chr9 21648080 21648217 -102427955 - ID_B1 SINE B4 -1 223 88 5 750 275 312 25 0 chr9 21648222 21648302 -102427870 + Tigger5 DNA MER2_type 2324 2405 -1 5 750 227 265 59 0 chr9 21649440 21649508 -102426664 - BC1_Mm scRNA scRNA -80 72 1 5 750 201 200 0 0 chr9 21649563 21649598 -102426574 + L2b LINE L2 3331 3365 -10 5 750 208 328 15 15 chr9 21649615 21649683 -102426489 + MIR SINE MIR 105 172 -90 5 750 595 311 25 5 chr9 21650425 21650622 -102425550 + B4A SINE B4 76 276 -16 5 750 327 245 0 0 chr9 21650659 21650753 -102425419 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 750 238 256 72 12 chr9 21650768 21650851 -102425321 - MIRc SINE MIR -130 138 51 5 750 234 0 0 0 chr9 21650863 21650889 -102425283 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 750 249 33 0 0 chr9 21650889 21650918 -102425254 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 750 288 0 0 0 chr9 21651489 21651521 -102424651 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 750 289 263 82 66 chr9 21651853 21651975 -102424197 + RSINE1 SINE B4 2 125 -40 5 750 339 264 33 91 chr9 21653187 21653308 -102422864 - RSINE1 SINE B4 -48 117 4 5 750 928 197 83 34 chr9 21653325 21653530 -102422642 - B3 SINE B2 -1 215 1 5 750 1452 89 5 0 chr9 21653622 21653813 -102422359 - B2_Mm1a SINE B2 -1 192 1 5 750 1212 68 0 0 chr9 21653843 21653991 -102422181 + B1_Mus1 SINE Alu 1 148 0 5 750 234 81 0 0 chr9 21654004 21654041 -102422131 + (A)n Simple_repeat Simple_repeat 1 37 0 5 750 425 19 19 0 chr9 21654189 21654243 -102421929 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 750 456 306 112 94 chr9 21654259 21654526 -102421646 - B4 SINE B4 -20 272 1 5 750 230 289 79 0 chr9 21654533 21654609 -102421563 - B1F SINE Alu -6 143 62 5 750 716 169 0 8 chr9 21654705 21654830 -102421342 - B1_Mus1 SINE Alu -18 130 7 5 750 416 314 58 0 chr9 21654860 21654997 -102421175 + RSINE1 SINE B4 5 149 -16 5 750 315 0 0 0 chr9 21654998 21655033 -102421139 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 750 1233 77 69 32 chr9 21655212 21655400 -102420772 + B2_Mm2 SINE B2 1 195 0 5 750 316 292 70 17 chr9 21655424 21655526 -102420646 + B4A SINE B4 126 233 -59 5 750 305 263 147 0 chr9 21655526 21655621 -102420551 + RSINE1 SINE B4 2 110 -55 5 750 252 0 0 0 chr9 21655629 21655657 -102420515 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 750 360 245 66 38 chr9 21655768 21655874 -102420298 + B1F SINE Alu 41 149 0 5 750 373 266 38 53 chr9 21656114 21656245 -102419927 + L2 LINE L2 2818 2946 -473 5 750 1262 41 0 0 chr9 21657662 21657808 -102418364 + B1_Mus1 SINE Alu 1 146 -2 5 750 229 303 50 0 chr9 21658432 21658531 -102417641 - MIR SINE MIR -92 170 67 5 750 189 307 137 43 chr9 21658817 21659028 -102417144 + L2 LINE L2 2825 3055 -364 5 750 270 263 112 31 chr9 21659226 21659324 -102416848 + MIRc SINE MIR 44 149 -119 5 750 659 227 0 34 chr9 21659810 21659956 -102416216 + ID_B1 SINE B4 84 224 0 5 750 918 192 61 24 chr9 21660199 21660412 -102415760 + B4A SINE B4 1 221 -71 5 750 226 259 0 33 chr9 21660417 21660477 -102415695 + RSINE1 SINE B4 13 70 -95 5 750 890 127 0 0 chr9 21660538 21660672 -102415500 + B1_Mur3 SINE Alu 10 143 -6 5 750 1223 55 0 0 chr9 21660717 21660862 -102415310 + B1_Mus1 SINE Alu 3 147 -1 5 750 182 37 0 36 chr9 21660867 21660895 -102415277 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 750 289 261 29 0 chr9 21660913 21660982 -102415190 + B4A SINE B4 219 289 -3 5 750 363 250 100 0 chr9 21661097 21661197 -102414975 - B3A SINE B2 -88 110 1 5 750 1709 21 0 10 chr9 21661296 21661491 -102414681 - B2_Mm1a SINE B2 0 193 1 5 750 1275 41 0 0 chr9 21661531 21661677 -102414495 + B1_Mm SINE Alu 2 147 0 5 750 528 93 0 0 chr9 21661677 21661752 -102414420 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 5 750 265 261 84 28 chr9 21661803 21661874 -102414298 + ID4_ SINE ID 5 79 -4 5 750 378 0 0 0 chr9 21661879 21661921 -102414251 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 750 946 95 7 0 chr9 21662154 21662291 -102413881 + B1_Mur4 SINE Alu 11 148 -2 5 750 347 200 0 65 chr9 21662329 21662452 -102413720 + (TGAA)n Simple_repeat Simple_repeat 1 115 0 5 750 365 227 32 26 chr9 21662919 21663073 -102413099 + (TA)n Simple_repeat Simple_repeat 2 156 0 5 750 1090 50 0 54 chr9 21663208 21663355 -102412817 + B1_Mus1 SINE Alu 1 139 -9 5 750 231 61 0 0 chr9 21663355 21663388 -102412784 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 750 927 111 181 43 chr9 21663536 21663724 -102412448 - B3 SINE B2 -1 215 2 5 750 1032 250 13 0 chr9 21663774 21664004 -102412168 + MTD LTR MaLR 1 233 -186 5 750 1767 157 79 9 chr9 21664004 21664344 -102411828 - ORR1B1 LTR MaLR 0 367 4 5 750 4926 170 65 60 chr9 21664347 21665076 -102411096 - ORR1B1-int LTR MaLR 0 1509 813 5 750 1185 82 0 0 chr9 21665076 21665223 -102410949 - B1_Mm SINE Alu 0 147 1 5 750 4926 170 65 60 chr9 21665223 21665700 -102410472 - ORR1B1-int LTR MaLR -697 812 297 5 750 2626 102 5 0 chr9 21665705 21666089 -102410083 - ORR1B1 LTR MaLR -8 386 1 5 750 1303 186 24 66 chr9 21666089 21666161 -102410011 - ORR1B1-int LTR MaLR -1212 297 238 5 750 1643 52 0 0 chr9 21666161 21666353 -102409819 + B2_Mm1t SINE B2 2 193 0 5 750 1303 186 24 66 chr9 21666353 21666591 -102409581 - ORR1B1-int LTR MaLR -1272 237 1 5 750 859 209 178 31 chr9 21666591 21666865 -102409307 - ORR1B1 LTR MaLR 0 384 5 5 750 796 224 20 55 chr9 21666893 21667092 -102409080 + MTD LTR MaLR 228 419 0 5 750 750 233 20 7 chr9 21667296 21667443 -102408729 - RSINE1 SINE B4 -13 152 4 5 750 478 299 40 5 chr9 21667651 21667849 -102408323 + L1ME1 LINE L1 5701 5905 -274 5 750 856 210 25 6 chr9 21667851 21668009 -102408163 + RSINE1 SINE B4 2 162 -3 5 750 497 189 120 21 chr9 21668363 21668478 -102407694 + B1F SINE Alu 27 148 -1 5 750 358 236 0 53 chr9 21668494 21668570 -102407602 + RSINE1 SINE B4 38 109 -56 5 750 916 159 14 0 chr9 21668789 21668934 -102407238 + B1_Mus2 SINE Alu 1 147 0 5 750 680 259 12 12 chr9 21668965 21669129 -102407043 - RSINE1 SINE B4 0 165 2 5 750 622 226 44 57 chr9 21669254 21669451 -102406721 - ID_B1 SINE B4 0 292 109 5 750 269 336 31 50 chr9 21669316 21669476 -102406696 + YREP_Mm Unknown Unknown 156 312 -1500 5 750 544 302 31 5 chr9 21669534 21669730 -102406442 - B4A SINE B4 -88 204 4 5 750 221 222 0 0 chr9 21669899 21669944 -102406228 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 750 480 35 0 0 chr9 21669948 21670006 -102406166 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 5 750 808 226 7 0 chr9 21670009 21670155 -102406017 - B1_Mus2 SINE Alu 0 147 1 5 750 566 181 0 34 chr9 21670264 21670504 -102405668 + (TG)n Simple_repeat Simple_repeat 1 231 0 5 750 359 297 65 72 chr9 21670505 21670643 -102405529 - B4 SINE B4 -152 140 4 5 750 183 42 0 0 chr9 21670923 21670947 -102405225 + (TTGG)n Simple_repeat Simple_repeat 1 24 0 5 750 228 284 30 0 chr9 21671422 21671489 -102404683 + PB1D10 SINE Alu 48 116 -1 5 750 265 325 25 0 chr9 21671583 21671663 -102404509 + MIR SINE MIR 86 167 -95 5 750 779 150 105 0 chr9 21671857 21671990 -102404182 + B1_Mur2 SINE Alu 2 148 -1 5 750 1085 115 7 0 chr9 21672020 21672168 -102404004 + B1_Mur3 SINE Alu 1 149 0 5 750 276 189 93 13 chr9 21672405 21672480 -102403692 - B4A SINE B4 -211 81 1 5 750 295 247 85 11 chr9 21672504 21672598 -102403574 - ID_B1 SINE B4 -19 205 105 5 750 354 251 26 26 chr9 21672689 21672779 -102403393 - ID4 SINE ID -55 97 8 5 750 265 246 0 17 chr9 21672863 21672921 -102403251 + ID_B1 SINE B4 99 155 -69 5 750 694 191 61 0 chr9 21672936 21673067 -102403105 + B1_Mus1 SINE Alu 10 148 0 5 750 376 255 9 93 chr9 21673118 21673183 -102402989 + B3 SINE B2 112 177 -39 5 750 2188 100 65 0 chr9 21673183 21673492 -102402680 + ORR1A4 LTR MaLR 1 329 0 5 750 376 255 9 93 chr9 21673492 21673534 -102402638 + B3 SINE B2 178 210 -6 5 750 3170 54 65 181 chr9 21673588 21673772 -102402400 - MURVY-LTR LTR ERV1 -1 518 346 5 750 1047 64 42 14 chr9 21673772 21673914 -102402258 - B1_Mus2 SINE Alu 0 147 2 5 750 3170 54 65 181 chr9 21673914 21674315 -102401857 - MURVY-LTR LTR ERV1 -174 345 1 5 750 489 191 90 9 chr9 21674323 21674434 -102401738 + Lx9 LINE L1 6965 7084 -560 5 750 2430 176 87 12 chr9 21674509 21675026 -102401146 + Lx9 LINE L1 7089 7644 0 5 750 228 280 50 101 chr9 21675069 21675088 -102401084 + B1_Mus2 SINE Alu 30 48 -99 6 750 1263 21 0 0 chr9 21675088 21675228 -102400944 - B1_Mus2 SINE Alu -6 141 2 6 750 228 280 50 101 chr9 21675228 21675250 -102400922 + B1_Mus2 SINE Alu 49 142 -5 6 750 320 250 26 13 chr9 21675250 21675327 -102400845 + ID_B1 SINE B4 142 219 -5 5 750 203 207 0 33 chr9 21675327 21675387 -102400785 + GA-rich Low_complexity Low_complexity 1 58 0 6 750 530 155 48 10 chr9 21675773 21675877 -102400295 + B1F2 SINE Alu 1 108 -41 6 750 511 281 54 25 chr9 21676210 21676414 -102399758 - B3 SINE B2 -3 213 4 6 750 556 220 10 0 chr9 21676442 21676542 -102399630 - PB1D9 SINE Alu -17 103 3 6 750 818 162 0 35 chr9 21677104 21677245 -102398927 + B1_Mur1 SINE Alu 14 149 0 6 750 242 292 21 43 chr9 21677354 21677447 -102398725 + ID_B1 SINE B4 35 125 -99 6 750 494 206 39 0 chr9 21677431 21677533 -102398639 + B3A SINE B2 16 121 -77 6 750 249 224 0 0 chr9 21677549 21677607 -102398565 + CT-rich Low_complexity Low_complexity 1 58 0 6 750 665 138 2 17 chr9 21677837 21677954 -102398218 - B1_Mus1 SINE Alu -21 127 12 6 750 217 191 48 0 chr9 21677990 21678032 -102398140 + polypyrimidine Low_complexity Low_complexity 2 45 0 6 750 253 236 18 0 chr9 21678033 21678088 -102398084 - B1_Mur1 SINE Alu 0 149 94 6 750 764 182 0 33 chr9 21678136 21678289 -102397883 + B1_Mur2 SINE Alu 1 148 -1 6 750 284 281 29 19 chr9 21678320 21678425 -102397747 + Lx8 LINE L1 6719 6824 -649 6 750 959 282 101 0 chr9 21678488 21678903 -102397269 + Lx8 LINE L1 6800 7256 -217 6 750 417 277 37 63 chr9 21679034 21679223 -102396949 + B3 SINE B2 1 184 -32 6 750 539 200 48 73 chr9 21679274 21679398 -102396774 + B3A SINE B2 78 198 0 6 750 1211 238 121 20 chr9 21679427 21679774 -102396398 - MTD LTR MaLR -20 399 18 6 750 218 81 0 26 chr9 21679865 21679903 -102396269 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 6 750 1229 61 0 0 chr9 21679903 21680050 -102396122 - B1_Mm SINE Alu 0 147 1 6 750 1101 130 47 26 chr9 21680054 21680244 -102395928 - B2_Mm2 SINE B2 0 195 2 6 750 737 241 66 0 chr9 21680251 21680417 -102395755 - ID_B1 SINE B4 -4 220 44 6 750 428 229 0 0 chr9 21680418 21680488 -102395684 - ID_B1 SINE B4 -20 204 135 6 750 360 265 61 10 chr9 21680494 21680593 -102395579 + PB1D7 SINE Alu 7 110 -10 6 750 189 74 0 0 chr9 21680593 21680620 -102395552 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 750 300 268 58 67 chr9 21680620 21680640 -102395532 + B1F SINE Alu 105 125 -24 6 750 385 293 0 0 chr9 21680635 21680717 -102395455 - B3A SINE B2 -116 82 1 6 750 740 142 0 24 chr9 21680746 21680869 -102395303 + PB1D9 SINE Alu 1 120 0 6 750 458 235 102 25 chr9 21680891 21681009 -102395163 + ID_B1 SINE B4 78 204 -20 6 750 427 256 118 118 chr9 21681131 21681303 -102394869 + B3 SINE B2 1 189 -27 6 750 625 275 14 0 chr9 21681303 21681445 -102394727 + B1_Mur1 SINE Alu 1 144 -5 6 750 1112 51 65 0 chr9 21681453 21681591 -102394581 + B1_Mus2 SINE Alu 1 147 0 6 750 256 256 118 118 chr9 21681591 21681604 -102394568 + B2_Mm2 SINE B2 183 195 0 6 750 742 275 51 14 chr9 21681703 21681917 -102394255 - ID_B1 SINE B4 0 224 3 6 750 1993 70 136 0 chr9 21682064 21682351 -102393821 + ORR1A2 LTR MaLR 2 327 0 6 750 339 326 25 16 chr9 21682598 21683304 -102392868 - SYNREP_MM Satellite Satellite -10 712 1 6 750 239 338 13 13 chr9 21683369 21683522 -102392650 - SYNREP_MM Satellite Satellite -5 261 109 6 750 2840 50 0 3 chr9 21683630 21683968 -102392204 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 750 53212 25 20 6 chr9 21683968 21690355 -102385817 + IAPEz-int LTR ERVK 8 6481 0 6 750 2853 47 0 3 chr9 21690355 21690693 -102385479 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 750 3367 73 0 2 chr9 21690704 21691131 -102385041 - L1Md_F2 LINE L1 0 6582 6157 6 750 296 294 18 64 chr9 21691239 21691348 -102384824 - PB1D9 SINE Alu -16 104 1 6 750 354 194 0 0 chr9 21691370 21691442 -102384730 - ID_B1 SINE B4 -3 221 150 6 750 254 192 0 0 chr9 21691447 21691499 -102384673 - B1F SINE Alu -26 123 72 6 750 231 175 35 17 chr9 21691469 21691527 -102384645 - B1_Mur1 SINE Alu -19 130 72 6 750 421 268 0 0 chr9 21691508 21691605 -102384567 - ID_B1 SINE B4 -27 197 101 6 750 253 179 70 18 chr9 21692252 21692309 -102383863 + ZP3AR Satellite Satellite 42 101 -111 6 750 543 156 97 44 chr9 21692356 21692470 -102383702 + PB1D9 SINE Alu 1 120 0 6 750 572 283 31 28 chr9 21692581 21692781 -102383391 + B4 SINE B4 27 225 -67 6 750 427 274 204 0 chr9 21692781 21692894 -102383278 + RSINE1 SINE B4 2 137 -28 6 750 332 320 9 46 chr9 21693254 21693362 -102382810 - PB1D10 SINE Alu -13 104 1 6 750 636 275 75 0 chr9 21693362 21693429 -102382743 - ID SINE ID -142 82 4 6 750 22 0 0 0 chr9 21693453 21693475 -102382697 + AT_rich Low_complexity Low_complexity 1 22 0 6 750 736 218 0 45 chr9 21693479 21693633 -102382539 + B1_Mur1 SINE Alu 2 148 -1 6 750 460 254 44 0 chr9 21693715 21693829 -102382343 - ID_B1 SINE B4 0 224 106 6 750 433 187 51 86 chr9 21694047 21694164 -102382008 + MT2B LTR ERVL 144 256 -345 6 750 1038 77 0 20 chr9 21694067 21694199 -102381973 + B1_Mus1 SINE Alu 6 137 -11 6 750 347 31 0 72 chr9 21694199 21694268 -102381904 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 6 750 1038 77 0 20 chr9 21694268 21694281 -102381891 + B1_Mus1 SINE Alu 138 148 0 6 750 298 231 175 25 chr9 21694279 21694359 -102381813 + ID_B1 SINE B4 108 199 -25 6 750 268 246 0 0 chr9 21694331 21694392 -102381780 + B1F SINE Alu 65 125 -24 6 750 268 246 0 0 chr9 21694418 21694479 -102381693 + B1F SINE Alu 65 125 -24 6 750 332 253 39 11 chr9 21694482 21694582 -102381590 + B1F SINE Alu 46 144 -5 6 750 346 264 0 0 chr9 21694514 21694586 -102381586 + ID_B1 SINE B4 152 223 -1 6 750 415 219 13 26 chr9 21694598 21694753 -102381419 + GA-rich Low_complexity Low_complexity 4 156 0 6 750 1620 32 0 16 chr9 21694979 21695168 -102381004 - B2_Mm1a SINE B2 -6 187 2 6 750 444 275 68 8 chr9 21695535 21695667 -102380505 + RSINE1 SINE B4 5 144 -21 6 750 225 0 0 0 chr9 21695676 21695701 -102380471 + (TAA)n Simple_repeat Simple_repeat 3 27 0 6 750 661 191 88 0 chr9 21695723 21695859 -102380313 + B1_Mur2 SINE Alu 2 149 0 6 750 228 220 169 0 chr9 21695864 21695923 -102380249 + B4A SINE B4 78 146 -146 6 750 354 219 27 85 chr9 21695877 21695983 -102380189 + PB1D7 SINE Alu 6 113 -14 6 750 507 274 112 15 chr9 21696136 21696395 -102379777 - B4A SINE B4 -7 285 2 6 750 466 274 25 25 chr9 21696784 21696904 -102379268 + PB1D7 SINE Alu 1 120 0 6 750 838 199 7 14 chr9 21696912 21697060 -102379112 + RSINE1 SINE B4 4 150 -15 6 750 757 217 139 0 chr9 21697103 21697283 -102378889 + B3 SINE B2 5 209 -7 6 750 1631 27 5 0 chr9 21697289 21697477 -102378695 - B2_Mm1a SINE B2 -4 189 1 6 750 542 252 130 0 chr9 21697945 21698076 -102378096 - RSINE1 SINE B4 -10 155 8 6 750 255 287 69 0 chr9 21698333 21698420 -102377752 + ORR1E LTR MaLR 2 94 -265 6 750 445 293 38 68 chr9 21698584 21698716 -102377456 + RSINE1 SINE B4 2 129 -36 6 750 528 16 0 0 chr9 21698731 21698792 -102377380 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 750 293 250 0 0 chr9 21699120 21699176 -102376996 + ID4_ SINE ID 12 67 -16 6 750 288 212 0 0 chr9 21699177 21699243 -102376929 + GA-rich Low_complexity Low_complexity 2 67 0 6 750 248 316 0 0 chr9 21699244 21699301 -102376871 + B1F1 SINE Alu 15 71 -78 6 750 588 318 67 15 chr9 21699347 21699542 -102376630 + ID_B1 SINE B4 3 207 -17 6 750 279 225 14 40 chr9 21699629 21699703 -102376469 + ID_B1 SINE B4 153 224 0 6 750 394 218 11 11 chr9 21699711 21699799 -102376373 + B3A SINE B2 19 106 -92 6 750 559 215 306 12 chr9 21699799 21699958 -102376214 - MTD LTR MaLR -11 408 191 6 750 378 235 106 60 chr9 21699958 21700112 -102376060 - RLTR13D3 LTR ERVK 0 1114 983 6 750 256 132 0 0 chr9 21700293 21700331 -102375841 - B2_Mm2 SINE B2 -157 38 1 6 750 1417 75 32 0 chr9 21700663 21700850 -102375322 + B2_Mm1a SINE B2 1 193 0 6 750 977 183 15 25 chr9 21701021 21701217 -102374955 - MTD LTR MaLR -217 202 9 6 750 458 208 69 0 chr9 21701229 21701330 -102374842 - MTD-int LTR MaLR -8 1250 1143 6 750 898 181 7 0 chr9 21701332 21701481 -102374691 - B1_Mur4 SINE Alu 0 150 1 6 750 1069 80 0 0 chr9 21701512 21701650 -102374522 + B1_Mm SINE Alu 10 147 0 6 750 211 122 40 20 chr9 21701650 21701700 -102374472 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 6 750 207 0 0 0 chr9 21701758 21701781 -102374391 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 750 938 121 35 0 chr9 21701818 21701959 -102374213 - B1_Mus1 SINE Alu 0 148 3 6 750 653 188 107 7 chr9 21701968 21702032 -102374140 - MTD-int LTR MaLR -166 1092 1014 6 750 297 0 0 0 chr9 21702032 21702065 -102374107 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 750 653 188 107 7 chr9 21702065 21702150 -102374022 - MTD-int LTR MaLR -245 1013 928 6 750 717 243 0 50 chr9 21702499 21702659 -102373513 - RSINE1 SINE B4 -12 153 2 6 750 1233 68 0 0 chr9 21702809 21702956 -102373216 + B1_Mus1 SINE Alu 1 147 -1 6 750 865 211 66 42 chr9 21703039 21703252 -102372920 + ID_B1 SINE B4 7 224 0 6 750 806 163 42 7 chr9 21703644 21703786 -102372386 - B1_Mus1 SINE Alu 0 148 2 6 750 539 149 0 31 chr9 21703796 21703893 -102372279 - PB1D9 SINE Alu -6 114 21 6 750 245 241 111 25 chr9 21703828 21703909 -102372263 - B4A SINE B4 -123 169 82 6 750 546 296 45 0 chr9 21703915 21704094 -102372078 - ID_B1 SINE B4 -37 187 1 6 750 563 248 42 14 chr9 21704099 21704242 -102371930 - B1F1 SINE Alu 0 149 3 6 750 309 348 7 49 chr9 21704257 21704273 -102371899 - B1_Mus2 SINE Alu -7 140 5 6 750 587 231 0 40 chr9 21704273 21704399 -102371773 - ID_B1 SINE B4 -18 206 86 7 750 258 225 44 97 chr9 21704561 21704674 -102371498 + B4A SINE B4 186 292 0 7 750 805 185 14 7 chr9 21704813 21704960 -102371212 - B1_Mur2 SINE Alu -1 148 1 7 750 666 189 39 77 chr9 21705014 21705169 -102371003 + B1_Mur2 SINE Alu 1 149 0 7 750 271 272 50 16 chr9 21705205 21705328 -102370844 + B4 SINE B4 20 151 -14 7 750 606 272 30 48 chr9 21705478 21705644 -102370528 + RSINE1 SINE B4 3 165 0 7 750 422 243 117 0 chr9 21705681 21705784 -102370388 + PB1D10 SINE Alu 3 117 0 7 750 509 207 26 18 chr9 21705804 21705917 -102370255 + B1_Mur2 SINE Alu 36 149 0 7 750 225 284 45 0 chr9 21706070 21706137 -102370035 - LTR33A LTR ERVL -382 138 69 7 750 464 153 112 0 chr9 21706286 21706384 -102369788 + B3 SINE B2 105 213 -3 7 750 578 171 113 9 chr9 21706430 21706536 -102369636 - RSINE1 SINE B4 -47 118 2 7 750 222 37 0 0 chr9 21707136 21707163 -102369009 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 750 446 148 37 12 chr9 21707214 21707296 -102368876 - PB1D9 SINE Alu -1 119 36 7 750 234 258 9 114 chr9 21707217 21707322 -102368850 - MT2B LTR ERVL -336 265 172 7 750 1161 180 48 10 chr9 21707915 21708123 -102368049 - B3 SINE B2 0 216 1 7 750 2135 158 19 16 chr9 21708358 21708730 -102367442 - RLTR14 LTR ERV1 -1 381 9 7 750 1224 62 0 0 chr9 21708794 21708939 -102367233 - B1_Mus1 SINE Alu -2 146 2 7 750 794 146 30 8 chr9 21709689 21709820 -102366352 + B1_Mur3 SINE Alu 1 134 -15 7 750 261 0 0 0 chr9 21710000 21710029 -102366143 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 7 750 495 0 0 0 chr9 21710209 21710264 -102365908 + (TTA)n Simple_repeat Simple_repeat 3 57 0 7 750 1179 102 0 0 chr9 21710264 21710421 -102365751 - B2_Mm2 SINE B2 -38 157 1 7 750 453 108 59 3 chr9 21710536 21710620 -102365552 - MTD LTR MaLR -135 272 181 7 750 1149 95 0 0 chr9 21710656 21710803 -102365369 - B1_Mus1 SINE Alu 0 148 2 7 750 527 255 75 40 chr9 21710838 21711038 -102365134 - B3 SINE B2 -5 211 5 7 750 789 253 28 6 chr9 21711042 21711221 -102364951 + B3 SINE B2 31 213 -3 7 750 2589 140 30 0 chr9 21711301 21711702 -102364470 + MTC LTR MaLR 1 413 -8 7 750 380 300 70 0 chr9 21711707 21711807 -102364365 - RSINE1 SINE B4 -47 118 12 7 750 505 239 102 8 chr9 21712102 21712218 -102363954 + ID_B1 SINE B4 16 142 -82 7 750 587 226 10 0 chr9 21712218 21712320 -102363852 + B1_Mur3 SINE Alu 1 103 -46 7 750 496 303 42 0 chr9 21712660 21712802 -102363370 - RSINE1 SINE B4 -14 151 4 7 750 505 296 82 38 chr9 21713050 21713233 -102362939 - ID_B1 SINE B4 -20 204 14 7 750 962 136 0 21 chr9 21713295 21713438 -102362734 - B1_Mus2 SINE Alu -6 141 2 7 750 260 305 103 51 chr9 21715178 21715392 -102360780 + RMER12 LTR ERVK 733 957 -365 7 750 511 260 20 40 chr9 21715380 21715532 -102360640 - B4 SINE B4 0 292 144 7 750 364 229 195 0 chr9 21715603 21715721 -102360451 - B1F SINE Alu -8 141 1 7 750 616 244 151 17 chr9 21715876 21716055 -102360117 + B3 SINE B2 1 203 -13 7 750 908 156 7 0 chr9 21716070 21716211 -102359961 + B1_Mur4 SINE Alu 1 142 -8 7 750 774 240 65 69 chr9 21716262 21716553 -102359619 + B4 SINE B4 1 290 -2 7 750 233 292 62 10 chr9 21716568 21716665 -102359507 + PB1D10 SINE Alu 5 106 -11 7 750 514 125 54 43 chr9 21716935 21717027 -102359145 - ZP3AR Satellite Satellite -109 103 11 7 750 242 29 29 0 chr9 21717240 21717275 -102358897 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 750 1108 73 0 14 chr9 21717284 21717423 -102358749 - B1_Mm SINE Alu -9 138 2 7 750 355 275 12 12 chr9 21717431 21717512 -102358660 - B1F1 SINE Alu -5 144 64 7 750 864 274 32 11 chr9 21717492 21717737 -102358435 - ID_B1 SINE B4 -30 262 9 7 750 30 27 0 0 chr9 21717758 21717795 -102358377 + AT_rich Low_complexity Low_complexity 1 37 0 7 750 495 270 20 0 chr9 21717826 21717926 -102358246 - B3A SINE B2 -95 103 2 7 750 293 248 87 19 chr9 21718080 21718183 -102357989 + PB1D10 SINE Alu 7 116 -1 7 750 276 306 23 12 chr9 21718197 21718283 -102357889 + ID SINE ID 3 89 -135 7 750 242 306 48 40 chr9 21718283 21718323 -102357849 + BC1_Mm scRNA scRNA 3 129 -23 7 750 704 211 28 14 chr9 21718386 21718530 -102357642 + B1_Mur1 SINE Alu 2 147 -2 7 750 657 228 123 130 chr9 21718693 21718986 -102357186 - B4A SINE B4 -1 291 1 7 750 395 226 36 0 chr9 21720494 21720578 -102355594 - RSINE1 SINE B4 -76 89 3 7 750 486 280 72 43 chr9 21720594 21720803 -102355369 - B3 SINE B2 0 216 2 7 750 377 194 275 9 chr9 21720819 21720928 -102355244 - ID_B1 SINE B4 -1 223 86 7 750 234 203 145 26 chr9 21720948 21721024 -102355148 - L2b LINE L2 -4 3371 3287 7 750 607 260 30 40 chr9 21721103 21721295 -102354877 + ID_B1 SINE B4 53 245 -47 7 750 224 185 0 18 chr9 21721296 21721351 -102354821 + GA-rich Low_complexity Low_complexity 3 56 0 7 750 205 310 81 1 chr9 21723040 21723149 -102353023 + MIRb SINE MIR 48 157 -105 7 750 647 216 199 0 chr9 21723181 21723357 -102352815 + B3 SINE B2 1 211 -5 7 750 229 346 48 62 chr9 21723357 21723496 -102352676 - B1_Mus2 SINE Alu -5 144 7 7 750 561 261 63 0 chr9 21723395 21723565 -102352607 - ID_B1 SINE B4 -32 192 5 7 750 1423 106 0 0 chr9 21723696 21723885 -102352287 + B2_Mm2 SINE B2 1 189 -6 7 750 408 214 90 0 chr9 21723928 21724017 -102352155 + RSINE1 SINE B4 36 132 -33 7 750 1121 82 0 39 chr9 21724056 21724209 -102351963 + B1_Mus2 SINE Alu 1 147 0 7 750 500 285 0 23 chr9 21724236 21724369 -102351803 + ID_B1 SINE B4 87 216 -8 7 750 589 261 21 21 chr9 21724391 21724536 -102351636 + B1F SINE Alu 4 148 -1 7 750 504 268 98 0 chr9 21724540 21724663 -102351509 + B1F SINE Alu 6 140 -9 7 750 1428 62 17 0 chr9 21724933 21725109 -102351063 - B2_Mm2 SINE B2 -14 181 3 7 750 273 272 135 42 chr9 21725115 21725211 -102350961 - MLT1I LTR MaLR -270 141 37 7 750 180 0 0 0 chr9 21725391 21725411 -102350761 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 750 285 29 0 0 chr9 21727247 21727281 -102348891 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 750 315 304 19 56 chr9 21727281 21727389 -102348783 - RSINE1 SINE B4 -24 141 38 7 750 670 275 34 59 chr9 21727401 21727637 -102348535 - B4A SINE B4 -62 230 1 7 750 513 231 25 8 chr9 21727649 21727767 -102348405 - B1F SINE Alu -9 140 21 7 750 410 244 113 0 chr9 21727994 21728109 -102348063 - ID_B1 SINE B4 -10 214 87 7 750 200 183 16 62 chr9 21728113 21728177 -102347995 + T-rich Low_complexity Low_complexity 4 64 0 7 750 740 164 0 15 chr9 21728178 21728308 -102347864 - B1_Mur2 SINE Alu 0 149 22 7 750 262 232 9 144 chr9 21728215 21728326 -102347846 - MT2B LTR ERVL -337 264 169 7 750 382 248 0 92 chr9 21728324 21728444 -102347728 - PB1D10 SINE Alu 0 117 9 7 750 292 196 0 0 chr9 21728895 21728946 -102347226 + 4.5SRNA scRNA scRNA 41 91 -3 7 750 573 289 53 11 chr9 21728946 21729135 -102347037 + B3A SINE B2 1 197 -1 7 750 443 187 319 9 chr9 21729139 21729252 -102346920 + B1_Mus1 SINE Alu 1 148 0 7 750 21 36 0 0 chr9 21729259 21729287 -102346885 + AT_rich Low_complexity Low_complexity 1 28 0 7 750 644 233 215 0 chr9 21729300 21729472 -102346700 + ID_B1 SINE B4 15 223 -1 7 750 275 218 55 0 chr9 21729522 21729577 -102346595 + ID4_ SINE ID 24 81 -2 7 750 885 246 23 18 chr9 21729591 21729810 -102346362 + B4A SINE B4 2 221 -71 7 750 951 163 7 0 chr9 21729818 21729965 -102346207 + B1_Mur4 SINE Alu 1 148 -2 7 750 234 0 0 0 chr9 21729965 21729991 -102346181 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 7 750 526 194 17 2 chr9 21729991 21730110 -102346062 + B1_Mur4 SINE Alu 2 118 -29 7 750 237 211 77 0 chr9 21730079 21730131 -102346041 + ID4_ SINE ID 26 81 -2 7 750 210 347 0 75 chr9 21730097 21730203 -102345969 + PB1D9 SINE Alu 15 112 -8 7 750 241 281 0 34 chr9 21731103 21731162 -102345010 + B1F SINE Alu 8 64 -85 7 750 221 312 13 25 chr9 21731218 21731297 -102344875 + ID_B1 SINE B4 77 154 -70 7 750 253 292 74 19 chr9 21731228 21731336 -102344836 + PB1D9 SINE Alu 6 119 -1 7 750 582 272 190 0 chr9 21731358 21731542 -102344630 + ID_B1 SINE B4 4 222 -2 7 750 555 190 137 8 chr9 21732518 21732635 -102343537 - B1_Mur1 SINE Alu -13 136 5 7 750 935 247 21 0 chr9 21732675 21732869 -102343303 - B3 SINE B2 -10 206 9 7 750 713 141 50 0 chr9 21732879 21733000 -102343172 - B1_Mur1 SINE Alu -7 142 16 7 750 236 259 71 47 chr9 21733069 21733154 -102343018 - RSINE1 SINE B4 -15 150 64 7 750 976 210 48 5 chr9 21733263 21733469 -102342703 + ID_B1 SINE B4 5 219 -5 7 750 411 322 0 0 chr9 21734163 21734284 -102341888 - ID_B1 SINE B4 -1 223 103 8 750 318 350 44 0 chr9 21734284 21734300 -102341872 - B1F SINE Alu -1 148 6 8 750 828 212 7 0 chr9 21734313 21734459 -102341713 - B1_Mus1 SINE Alu 0 148 2 8 750 282 29 0 0 chr9 21734479 21734514 -102341658 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 750 334 297 44 26 chr9 21734535 21734649 -102341523 - B3A SINE B2 -57 141 26 8 750 321 25 0 0 chr9 21734651 21734665 -102341507 + (A)n Simple_repeat Simple_repeat 1 14 0 8 750 1187 61 0 26 chr9 21734665 21734816 -102341356 + B1_Mus2 SINE Alu 1 147 0 8 750 321 25 0 0 chr9 21734816 21734841 -102341331 + (A)n Simple_repeat Simple_repeat 1 25 0 8 750 348 182 45 0 chr9 21734848 21734914 -102341258 - B1_Mur4 SINE Alu -46 104 36 8 750 389 328 96 15 chr9 21734926 21735062 -102341110 - B3A SINE B2 -46 152 6 8 750 182 33 0 62 chr9 21735086 21735118 -102341054 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 8 750 972 124 7 0 chr9 21735234 21735371 -102340801 + B1_Mur4 SINE Alu 2 139 -11 8 750 252 0 0 0 chr9 21735372 21735400 -102340772 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 8 750 348 248 238 8 chr9 21735860 21735982 -102340190 - RSINE1 SINE B4 -6 159 10 8 750 793 273 63 0 chr9 21736522 21736727 -102339445 + ID_B1 SINE B4 6 223 -1 8 750 776 199 210 0 chr9 21736744 21736920 -102339252 + B3 SINE B2 3 215 -1 8 750 270 0 0 0 chr9 21736969 21736999 -102339173 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 750 523 256 8 0 chr9 21736999 21737120 -102339052 + B4A SINE B4 117 238 -54 8 750 205 304 0 0 chr9 21737158 21737214 -102338958 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 750 398 318 52 0 chr9 21738279 21738433 -102337739 + MIRc SINE MIR 28 189 -79 8 750 500 263 14 21 chr9 21739218 21739358 -102336814 - ID_B1 SINE B4 -6 218 80 8 750 1179 187 34 15 chr9 21739377 21739583 -102336589 - B3 SINE B2 -5 211 2 8 750 1371 82 28 0 chr9 21739594 21739776 -102336396 - B2_Mm2 SINE B2 -8 187 1 8 750 296 272 130 0 chr9 21740452 21740544 -102335628 + ID_B1 SINE B4 121 224 0 8 750 575 236 43 7 chr9 21740546 21740687 -102335485 + RSINE1 SINE B4 3 148 -17 8 750 909 143 28 7 chr9 21740716 21740857 -102335315 - B1_Mur4 SINE Alu -5 145 2 8 750 776 287 30 20 chr9 21740892 21741140 -102335032 + ID_B1 SINE B4 20 265 -27 8 750 378 0 0 0 chr9 21741962 21742004 -102334168 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 750 383 0 21 0 chr9 21742004 21742050 -102334122 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 750 423 0 0 0 chr9 21742544 21742591 -102333581 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 750 337 282 0 0 chr9 21742871 21742956 -102333216 + MIRc SINE MIR 107 191 -77 8 750 290 300 0 0 chr9 21743431 21743501 -102332671 + RSINE1 SINE B4 90 159 -6 8 750 215 61 30 0 chr9 21743520 21743553 -102332619 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 8 750 225 232 29 14 chr9 21744064 21744161 -102332011 + MIRc SINE MIR 49 159 -117 8 750 337 206 168 32 chr9 21744161 21744256 -102331916 + PB1D10 SINE Alu 5 112 -5 8 750 486 0 0 0 chr9 21744262 21744316 -102331856 + (TA)n Simple_repeat Simple_repeat 1 54 0 8 750 438 291 57 50 chr9 21744347 21744488 -102331684 + B1F2 SINE Alu 4 145 -4 8 750 654 177 80 8 chr9 21744494 21744619 -102331553 + B1_Mur1 SINE Alu 16 149 0 8 750 899 246 52 0 chr9 21744698 21744909 -102331263 + ID_B1 SINE B4 1 222 -2 8 750 214 294 0 61 chr9 21745010 21745108 -102331064 + CT-rich Low_complexity Low_complexity 1 92 0 8 750 608 271 33 7 chr9 21745690 21745842 -102330330 + RSINE1 SINE B4 10 165 0 8 750 459 245 0 0 chr9 21745859 21746006 -102330166 + (CA)n Simple_repeat Simple_repeat 2 148 0 8 750 599 300 34 43 chr9 21746030 21746239 -102329933 + B4 SINE B4 83 289 -3 8 750 415 241 28 9 chr9 21746261 21746370 -102329802 + PB1D10 SINE Alu 7 117 0 8 750 550 202 129 70 chr9 21746440 21746626 -102329546 + B3A SINE B2 1 197 -1 8 750 1151 61 0 33 chr9 21746644 21746796 -102329376 - B1_Mus2 SINE Alu 0 147 1 8 750 213 180 0 0 chr9 21746845 21746895 -102329277 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 750 220 261 0 0 chr9 21746901 21746947 -102329225 + PB1D10 SINE Alu 59 104 -13 8 750 312 281 37 46 chr9 21746992 21747100 -102329072 + RSINE1 SINE B4 57 163 -2 8 750 334 263 48 48 chr9 21747404 21747508 -102328664 + RSINE1 SINE B4 27 130 -35 8 750 213 108 0 0 chr9 21747567 21747604 -102328568 + (C)n Simple_repeat Simple_repeat 1 37 0 8 750 573 93 62 0 chr9 21747604 21747701 -102328471 - B1_Mus2 SINE Alu -11 136 34 8 750 779 252 186 4 chr9 21749267 21749498 -102326674 + B4 SINE B4 7 279 -13 8 750 1086 106 0 0 chr9 21749622 21749764 -102326408 + B1_Mus1 SINE Alu 1 142 -6 8 750 243 0 0 0 chr9 21749768 21749795 -102326377 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 750 208 244 0 0 chr9 21749842 21749887 -102326285 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 750 751 225 62 31 chr9 21749894 21750087 -102326085 - B3 SINE B2 -17 199 1 8 750 460 183 12 0 chr9 21750119 21750201 -102325971 + B1_Mur4 SINE Alu 7 89 -61 8 750 520 211 20 129 chr9 21750203 21750350 -102325822 - B1_Mur1 SINE Alu -17 132 2 8 750 917 222 28 23 chr9 21750359 21750576 -102325596 - ID_B1 SINE B4 -6 218 1 8 750 265 336 78 0 chr9 21750600 21750716 -102325456 + RSINE1 SINE B4 5 129 -36 8 750 24 0 0 0 chr9 21750759 21750783 -102325389 + AT_rich Low_complexity Low_complexity 1 24 0 8 750 1100 155 98 0 chr9 21750807 21751000 -102325172 + B3 SINE B2 2 213 -3 8 750 523 221 87 0 chr9 21751073 21751200 -102324972 + B1_Mur3 SINE Alu 1 138 -11 8 750 240 35 0 0 chr9 21751200 21751229 -102324943 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 750 396 0 0 0 chr9 21751891 21751935 -102324237 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 750 371 252 42 67 chr9 21753483 21753602 -102322570 + ID_B1 SINE B4 63 178 -46 8 750 256 196 234 21 chr9 21753706 21753800 -102322372 - PB1D10 SINE Alu -1 116 3 8 750 312 349 18 0 chr9 21753853 21753962 -102322210 + RSINE1 SINE B4 2 112 -53 8 750 234 91 0 0 chr9 21754002 21754035 -102322137 + (ATGGTG)n Simple_repeat Simple_repeat 6 38 0 8 750 349 284 78 0 chr9 21754210 21754312 -102321860 + RSINE1 SINE B4 2 111 -54 8 750 435 245 19 19 chr9 21754368 21754476 -102321696 + ID_B1 SINE B4 92 199 -25 8 750 257 406 0 24 chr9 21754627 21754791 -102321381 - L2a LINE L2 -352 3074 2915 8 750 525 333 52 5 chr9 21755130 21755323 -102320849 + ID_B1 SINE B4 2 203 -21 8 750 300 297 112 94 chr9 21755338 21755498 -102320674 + RSINE1 SINE B4 3 165 0 8 750 648 181 0 0 chr9 21755504 21755670 -102320502 + (CA)n Simple_repeat Simple_repeat 2 167 0 8 750 781 237 45 35 chr9 21755686 21755887 -102320285 + B3 SINE B2 12 214 -2 8 750 504 264 0 0 chr9 21755997 21756103 -102320069 + RSINE1 SINE B4 2 107 -58 8 750 256 323 67 79 chr9 21756103 21756175 -102319997 + B3 SINE B2 1 176 -40 8 750 955 200 92 0 chr9 21756198 21756393 -102319779 + B3 SINE B2 4 216 0 8 750 244 236 18 0 chr9 21756400 21756455 -102319717 + GA-rich Low_complexity Low_complexity 2 57 0 8 750 234 91 0 0 chr9 21756455 21756488 -102319684 + (ATG)n Simple_repeat Simple_repeat 1 33 0 8 750 782 211 13 19 chr9 21756490 21756649 -102319523 + B3 SINE B2 6 163 -53 8 750 501 17 0 0 chr9 21756649 21756707 -102319465 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 750 469 246 47 53 chr9 21756719 21756869 -102319303 + B1F SINE Alu 1 149 0 8 750 939 135 26 0 chr9 21756873 21757029 -102319143 + B2_Mm2 SINE B2 2 161 -34 8 750 414 0 0 0 chr9 21757030 21757076 -102319096 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 8 750 676 178 44 0 chr9 21757084 21757219 -102318953 + B1_Mur3 SINE Alu 9 149 0 8 750 243 242 16 0 chr9 21757278 21757340 -102318832 + B2_Mm2 SINE B2 27 89 -106 8 750 241 225 34 101 chr9 21757344 21757433 -102318739 + B3 SINE B2 134 216 0 8 750 186 103 0 0 chr9 21757605 21757634 -102318538 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 8 750 255 61 0 0 chr9 21757855 21757888 -102318284 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 751 271 168 31 21 chr9 21758004 21758101 -102318071 + (TG)n Simple_repeat Simple_repeat 1 98 0 8 751 461 17 17 0 chr9 21758446 21758504 -102317668 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 751 395 269 53 88 chr9 21758866 21758925 -102317247 + RSINE1 SINE B4 1 64 -101 8 751 1211 78 31 72 chr9 21758925 21759119 -102317053 + B2_Mm2 SINE B2 1 186 -9 8 751 395 269 53 88 chr9 21759119 21759230 -102316942 + RSINE1 SINE B4 65 165 0 8 751 514 176 110 9 chr9 21759624 21759733 -102316439 - PB1D9 SINE Alu 0 120 1 8 751 846 233 68 19 chr9 21759755 21759961 -102316211 - B3 SINE B2 0 216 1 8 751 232 200 91 0 chr9 21760731 21760786 -102315386 + ID4 SINE ID 2 61 -22 8 751 545 272 172 0 chr9 21760750 21760919 -102315253 + ID_B1 SINE B4 27 224 0 8 751 432 232 61 0 chr9 21761762 21761861 -102314311 + RSINE1 SINE B4 25 129 -36 8 751 404 276 32 8 chr9 21762013 21762137 -102314035 - ID_B1 SINE B4 -3 221 95 8 751 377 260 19 0 chr9 21762304 21762408 -102313764 + ID_B1 SINE B4 112 217 -7 9 751 670 172 92 56 chr9 21762418 21762560 -102313612 + B1_Mur1 SINE Alu 2 148 -1 9 751 580 208 23 8 chr9 21762610 21762741 -102313431 + RMER15 LTR ERVL 370 502 -73 9 751 403 244 88 8 chr9 21762990 21763121 -102313051 + PB1D10 SINE Alu 1 133 -16 9 751 191 270 15 31 chr9 21764845 21764910 -102311262 + MIRc SINE MIR 68 131 -137 9 751 323 258 56 0 chr9 21765661 21765750 -102310422 + RSINE1 SINE B4 72 165 0 9 751 588 258 20 7 chr9 21767315 21767467 -102308705 + ID_B1 SINE B4 70 223 -1 9 751 336 24 0 0 chr9 21767543 21767584 -102308588 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 9 751 214 341 81 38 chr9 21768453 21768477 -102307695 - B3A SINE B2 -2 196 53 9 751 491 276 39 26 chr9 21768477 21768633 -102307539 - RSINE1 SINE B4 0 165 8 9 751 867 227 113 0 chr9 21768659 21768853 -102307319 - ID_B1 SINE B4 -4 220 5 9 751 371 260 10 3 chr9 21768863 21768963 -102307209 - B1F1 SINE Alu -5 112 15 9 751 1567 57 5 5 chr9 21768972 21769165 -102307007 - B2_Mm1t SINE B2 0 193 1 9 751 287 259 11 23 chr9 21769220 21769307 -102306865 + ID_B1 SINE B4 23 108 -116 9 751 325 246 7 14 chr9 21769307 21769447 -102306725 + (CATA)n Simple_repeat Simple_repeat 1 139 0 9 751 216 67 0 0 chr9 21769485 21769515 -102306657 + (CATA)n Simple_repeat Simple_repeat 2 31 0 9 751 391 218 0 0 chr9 21769525 21769592 -102306580 + ORR1C2 LTR MaLR 5 71 -303 9 751 1148 21 0 27 chr9 21769592 21769740 -102306432 + B2_Mm2 SINE B2 2 145 -50 9 751 1385 91 11 0 chr9 21769743 21769930 -102306242 + B2_Mm1t SINE B2 2 190 -3 9 751 730 139 303 0 chr9 21769955 21770120 -102306052 + B3 SINE B2 2 216 0 9 751 936 185 165 20 chr9 21770128 21770382 -102305790 + ORR1C2 LTR MaLR 93 383 -1 9 751 666 22 33 0 chr9 21770383 21770475 -102305697 + (CATA)n Simple_repeat Simple_repeat 1 95 0 9 751 213 189 113 0 chr9 21770482 21770535 -102305637 + RSINE1 SINE B4 3 61 -104 9 751 333 215 15 0 chr9 21770637 21770702 -102305470 + RSINE1 SINE B4 71 136 -29 9 751 268 310 14 0 chr9 21770737 21770808 -102305364 + B4A SINE B4 73 144 -148 9 751 486 281 0 17 chr9 21770754 21770870 -102305302 + PB1D7 SINE Alu 6 119 -1 9 751 876 228 65 65 chr9 21770887 21771103 -102305069 + B3 SINE B2 1 216 0 9 751 1041 30 0 0 chr9 21771188 21771319 -102304853 + B1_Mus1 SINE Alu 18 148 0 9 751 1207 112 6 16 chr9 21771334 21771516 -102304656 + B2_Mm1t SINE B2 1 180 -13 9 751 275 143 31 31 chr9 21771528 21771593 -102304579 + B2_Mm2 SINE B2 123 187 -8 9 751 384 212 187 16 chr9 21771814 21771954 -102304218 + B3 SINE B2 2 159 -36 9 751 707 176 8 0 chr9 21771954 21772073 -102304099 + PB1D9 SINE Alu 1 120 0 9 751 254 264 170 47 chr9 21772073 21772103 -102304069 + B2_Mm2 SINE B2 160 193 -2 9 751 493 255 64 0 chr9 21772146 21772287 -102303885 + RSINE1 SINE B4 3 152 -13 9 751 867 252 31 13 chr9 21772849 21773078 -102303094 + B4A SINE B4 4 236 -56 9 751 1369 102 27 0 chr9 21773170 21773357 -102302815 - B2_Mm2 SINE B2 -3 192 1 9 751 332 338 141 13 chr9 21773557 21773708 -102302464 - MLT1J LTR MaLR -148 364 194 9 751 741 169 13 26 chr9 21773708 21773860 -102302312 + B1_Mur4 SINE Alu 1 150 0 9 751 397 224 24 0 chr9 21774021 21774106 -102302066 - PB1D10 SINE Alu -3 114 28 9 751 396 231 125 0 chr9 21774225 21774329 -102301843 + MLT1K LTR MaLR 399 515 -80 9 751 312 193 119 12 chr9 21774434 21774518 -102301654 - B3 SINE B2 -123 93 1 9 751 402 39 0 0 chr9 21774668 21774720 -102301452 + (TTTTTG)n Simple_repeat Simple_repeat 1 52 0 9 751 1194 28 13 27 chr9 21774721 21774870 -102301302 - B1_Mm SINE Alu 0 147 1 9 751 543 228 65 39 chr9 21774924 21775079 -102301093 - RSINE1 SINE B4 -6 159 1 9 751 628 231 175 6 chr9 21775081 21775264 -102300908 - B4A SINE B4 -65 227 14 9 751 561 273 29 7 chr9 21775490 21775630 -102300542 - ID_B1 SINE B4 -1 223 81 9 751 535 242 43 37 chr9 21775780 21775943 -102300229 - ID_B1 SINE B4 -1 223 60 9 751 301 271 12 12 chr9 21775988 21776074 -102300098 - BC1_Mm scRNA scRNA -65 87 2 9 751 624 237 108 21 chr9 21776667 21776861 -102299311 + ORR1D2 LTR MaLR 1 211 -159 9 751 393 203 0 0 chr9 21776911 21776980 -102299192 - B3 SINE B2 -146 70 2 9 751 849 241 43 5 chr9 21776983 21777171 -102299001 - B3A SINE B2 -1 197 3 9 751 338 315 121 6 chr9 21777492 21777658 -102298514 + MTEb LTR MaLR 2 186 -193 9 751 466 260 25 55 chr9 21777634 21777656 -102298516 + ID_B1 SINE B4 67 221 0 9 751 853 110 14 14 chr9 21777656 21777794 -102298378 + B1_Mus2 SINE Alu 10 147 0 9 751 211 72 23 23 chr9 21777798 21777841 -102298331 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 9 751 413 271 71 57 chr9 21777857 21777998 -102298174 + RSINE1 SINE B4 3 145 -20 9 751 939 110 7 14 chr9 21778054 21778201 -102297971 - B1_Mus1 SINE Alu -1 147 2 9 751 537 287 44 66 chr9 21778233 21778416 -102297756 + MTEb LTR MaLR 164 342 -37 9 751 408 269 43 65 chr9 21778598 21778737 -102297435 + RSINE1 SINE B4 3 138 -27 9 751 362 260 89 10 chr9 21779430 21779531 -102296641 + PB1D10 SINE Alu 1 109 -8 9 751 405 269 34 24 chr9 21779598 21779613 -102296559 - PB1D10 SINE Alu 0 150 75 9 751 494 239 94 0 chr9 21779613 21779730 -102296442 - ID_B1 SINE B4 -4 220 93 9 751 405 269 34 24 chr9 21779730 21779742 -102296430 - PB1D10 SINE Alu 0 74 1 9 751 450 94 0 0 chr9 21779935 21779999 -102296173 + (CA)n Simple_repeat Simple_repeat 2 65 0 9 751 262 276 34 22 chr9 21780665 21780754 -102295418 + ZP3AR Satellite Satellite 31 120 -92 9 751 302 283 167 42 chr9 21781940 21782084 -102294088 + RSINE1 SINE B4 2 163 -2 9 751 263 317 48 9 chr9 21782159 21782264 -102293908 + PB1D10 SINE Alu 9 117 0 9 751 541 229 132 0 chr9 21782648 21782792 -102293380 - B3A SINE B2 -35 163 1 9 751 313 300 19 29 chr9 21782827 21782930 -102293242 - PB1D10 SINE Alu -5 112 11 9 751 621 236 21 0 chr9 21782985 21783125 -102293047 - ID_B1 SINE B4 -2 222 80 9 751 862 144 58 0 chr9 21783149 21783288 -102292884 - B1_Mus1 SINE Alu -1 147 1 9 751 316 216 27 13 chr9 21783306 21783381 -102292791 - ID4 SINE ID -6 77 2 9 751 717 159 56 0 chr9 21783992 21784118 -102292054 - B1_Mur1 SINE Alu -16 133 1 9 751 325 226 45 89 chr9 21784130 21784242 -102291930 - PB1D10 SINE Alu 0 117 11 9 751 367 263 52 31 chr9 21784155 21784308 -102291864 - ID_B1 SINE B4 -41 183 38 9 751 813 224 100 20 chr9 21784351 21784551 -102291621 + B3 SINE B2 1 216 0 9 751 357 228 22 156 chr9 21784781 21784811 -102291361 - ID_B1 SINE B4 -9 215 99 9 751 507 229 67 0 chr9 21784811 21784916 -102291256 - B1F1 SINE Alu -20 129 18 9 751 515 224 0 41 chr9 21785320 21785441 -102290731 - PB1D10 SINE Alu -1 116 1 9 751 928 254 10 5 chr9 21786222 21786424 -102289748 + B3 SINE B2 1 203 -13 9 751 368 261 16 65 chr9 21786491 21786614 -102289558 + PB1D9 SINE Alu 2 118 -2 9 751 648 264 24 30 chr9 21786840 21787004 -102289168 - RSINE1 SINE B4 0 165 3 9 751 1417 64 0 6 chr9 21787055 21787229 -102288943 + B2_Mm2 SINE B2 5 177 -18 9 751 426 151 0 0 chr9 21787232 21787305 -102288867 + GA-rich Low_complexity Low_complexity 1 73 0 9 751 541 223 0 69 chr9 21787426 21787556 -102288616 + B1F SINE Alu 18 138 -11 9 751 282 290 88 20 chr9 21787580 21787682 -102288490 + RSINE1 SINE B4 16 124 -41 9 751 297 0 0 0 chr9 21787682 21787715 -102288457 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 751 202 191 0 87 chr9 21787736 21787787 -102288385 + A-rich Low_complexity Low_complexity 6 54 0 9 751 517 254 164 12 chr9 21787787 21787958 -102288214 + B3A SINE B2 2 198 0 9 751 202 191 0 87 chr9 21787958 21787975 -102288197 + A-rich Low_complexity Low_complexity 55 68 0 9 751 214 304 130 0 chr9 21788018 21788110 -102288062 + B1F1 SINE Alu 46 149 0 9 751 250 286 129 0 chr9 21788153 21788223 -102287949 + ID4 SINE ID 5 83 0 9 751 294 275 132 0 chr9 21788236 21788327 -102287845 + RSINE1 SINE B4 3 105 -60 9 751 648 247 0 0 chr9 21788774 21788944 -102287228 + CT-rich Low_complexity Low_complexity 3 172 0 9 751 601 157 0 83 chr9 21788944 21789076 -102287096 + B1_Mur1 SINE Alu 29 149 0 9 751 460 194 0 97 chr9 21789420 21789534 -102286638 - B1F SINE Alu -1 148 46 9 751 21 36 0 0 chr9 21789683 21789711 -102286461 + AT_rich Low_complexity Low_complexity 1 28 0 9 751 956 131 27 14 chr9 21789719 21789866 -102286306 + B1_Mur3 SINE Alu 1 149 0 9 751 348 211 52 13 chr9 21789953 21790030 -102286142 + ID4_ SINE ID 2 81 -2 9 751 1383 154 168 0 chr9 21790117 21790403 -102285769 + Lx5 LINE L1 6715 7048 -2 9 751 440 254 60 30 chr9 21790440 21790574 -102285598 + B3 SINE B2 79 216 0 9 751 679 179 82 0 chr9 21790622 21790756 -102285416 + ID_B1 SINE B4 79 223 -1 9 751 207 293 95 24 chr9 21791045 21791129 -102285043 - MIRb SINE MIR -92 176 87 9 751 238 309 0 14 chr9 21791136 21791205 -102284967 - ID4_ SINE ID -13 70 3 9 751 890 253 130 4 chr9 21791314 21791568 -102284604 + B4A SINE B4 3 288 -4 9 751 953 127 0 6 chr9 21791610 21791768 -102284404 + (GGGA)n Simple_repeat Simple_repeat 4 160 0 9 751 210 37 0 0 chr9 21795179 21795206 -102280966 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 1 751 465 237 156 0 chr9 21796741 21796876 -102279296 - RSINE1 SINE B4 -7 158 3 1 751 988 66 7 105 chr9 21798344 21798497 -102277675 + B1_Mus1 SINE Alu 3 140 -8 1 751 1960 151 77 6 chr9 21798565 21798931 -102277241 + ORR1B1 LTR MaLR 2 393 -1 1 751 277 228 48 60 chr9 21799056 21799140 -102277032 - PB1D9 SINE Alu -34 86 4 1 751 224 300 19 126 chr9 21799140 21799172 -102277000 - ID SINE ID -139 85 65 1 751 375 73 0 0 chr9 21799969 21800024 -102276148 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 751 452 195 50 58 chr9 21800101 21800221 -102275951 - ID_B1 SINE B4 -1 223 105 1 751 886 138 80 0 chr9 21800241 21800379 -102275793 - B1_Mur3 SINE Alu 0 149 1 1 751 381 43 0 0 chr9 21800391 21800438 -102275734 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 751 838 150 0 54 chr9 21800439 21800587 -102275585 - B2_Mm2 SINE B2 -55 140 1 1 751 315 222 13 40 chr9 21800600 21800675 -102275497 - B4 SINE B4 -215 77 5 1 751 827 178 193 6 chr9 21800715 21800896 -102275276 - B3 SINE B2 0 216 2 1 751 610 122 0 18 chr9 21800947 21801056 -102275116 + (TCTCCC)n Simple_repeat Simple_repeat 3 109 0 1 751 843 139 95 0 chr9 21801469 21801606 -102274566 - B1_Mur4 SINE Alu 0 150 1 1 751 581 273 79 6 chr9 21801634 21801811 -102274361 - B3A SINE B2 -2 196 7 1 751 244 297 11 32 chr9 21801842 21801936 -102274236 - PB1D10 SINE Alu -19 98 7 1 751 599 318 19 0 chr9 21802039 21802193 -102273979 + RSINE1 SINE B4 3 159 -6 1 751 218 300 109 91 chr9 21802049 21802214 -102273958 + B2_Mm1a SINE B2 12 179 -14 1 751 225 0 0 0 chr9 21802691 21802716 -102273456 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 751 640 277 109 30 chr9 21802725 21802926 -102273246 - ID_B1 SINE B4 -3 221 5 1 751 234 156 0 0 chr9 21802935 21802980 -102273192 + GA-rich Low_complexity Low_complexity 2 46 0 1 751 658 292 11 11 chr9 21803119 21803299 -102272873 + B3A SINE B2 1 180 -18 1 751 304 344 20 118 chr9 21803370 21803387 -102272785 - B4A SINE B4 -1 291 273 1 751 308 270 68 0 chr9 21803387 21803461 -102272711 - B3A SINE B2 -119 79 1 1 751 304 344 20 118 chr9 21803461 21803685 -102272487 - B4A SINE B4 -1 272 6 1 751 511 264 2 90 chr9 21803685 21803783 -102272389 - ID_B1 SINE B4 -50 242 155 1 751 1432 64 11 16 chr9 21803783 21803974 -102272198 - B2_Mm1t SINE B2 -2 191 2 1 751 511 254 0 84 chr9 21803974 21804049 -102272123 - ID_B1 SINE B4 -70 154 83 1 751 270 268 134 0 chr9 21804079 21804176 -102271996 - PB1D10 SINE Alu -2 115 6 1 751 438 326 59 0 chr9 21804214 21804435 -102271737 + L1MA5A LINE L1 6059 6292 -5 1 751 514 167 10 7 chr9 21804463 21804562 -102271610 + PB1D9 SINE Alu 35 129 -21 1 751 1087 200 60 0 chr9 21804574 21804774 -102271398 + B3 SINE B2 1 212 -4 1 751 477 296 19 93 chr9 21804813 21804884 -102271288 + ID_B1 SINE B4 25 224 0 1 751 592 264 14 7 chr9 21804884 21805029 -102271143 + B1_Mus2 SINE Alu 1 146 -1 1 751 326 292 0 30 chr9 21805088 21805187 -102270985 + ID_B1 SINE B4 61 156 -68 1 751 320 264 14 14 chr9 21805183 21805256 -102270916 - RSINE1 SINE B4 -89 76 4 1 751 560 279 14 0 chr9 21805289 21805436 -102270736 - B1F SINE Alu 0 149 1 1 751 24 32 0 0 chr9 21805441 21805472 -102270700 + AT_rich Low_complexity Low_complexity 1 31 0 1 751 911 151 0 46 chr9 21805474 21805627 -102270545 - B1_Mus1 SINE Alu -2 146 1 1 751 449 316 35 30 chr9 21805664 21805866 -102270306 - MER20 DNA MER1_type -1 218 16 1 751 322 276 38 9 chr9 21805952 21806058 -102270114 - MIR SINE MIR -104 158 50 1 751 518 232 237 0 chr9 21806078 21806255 -102269917 + ID_B1 SINE B4 2 220 -4 1 751 21 0 0 0 chr9 21806255 21806276 -102269896 + AT_rich Low_complexity Low_complexity 1 21 0 1 751 785 241 30 35 chr9 21806276 21806474 -102269698 + B3A SINE B2 2 198 0 1 751 625 253 15 29 chr9 21808695 21808882 -102267290 - ID_B1 SINE B4 -43 249 66 1 751 211 217 0 0 chr9 21809279 21809325 -102266847 + B1F2 SINE Alu 3 48 -101 1 751 276 241 149 0 chr9 21809326 21809413 -102266759 - B3A SINE B2 0 198 99 1 751 301 235 57 67 chr9 21809664 21809769 -102266403 + ID_B1 SINE B4 121 224 0 1 751 796 250 88 15 chr9 21809945 21810205 -102265967 - B4A SINE B4 -11 281 3 1 751 690 188 71 14 chr9 21810493 21810633 -102265539 - B1_Mur1 SINE Alu 0 149 2 1 751 511 232 0 9 chr9 21811782 21811895 -102264277 - PB1D9 SINE Alu -1 119 8 1 751 298 321 0 0 chr9 21811911 21811992 -102264180 - ID4_ SINE ID 0 83 3 1 751 463 170 40 0 chr9 21812009 21812109 -102264063 - ZP3AR Satellite Satellite -85 127 24 1 751 209 310 165 8 chr9 21812290 21812403 -102263769 - L2c LINE L2 -200 3175 3051 1 751 255 211 145 0 chr9 21812911 21812987 -102263185 - ID_B1 SINE B4 -1 223 137 1 751 380 218 46 0 chr9 21813261 21813348 -102262824 - ZP3AR Satellite Satellite -77 135 45 1 751 225 286 165 12 chr9 21813485 21813570 -102262602 + PB1D10 SINE Alu 14 111 -6 1 751 256 215 98 37 chr9 21813621 21813640 -102262532 + ID_B1 SINE B4 138 224 0 1 751 398 63 16 0 chr9 21813640 21813703 -102262469 + B1_Mm SINE Alu 84 147 0 1 751 754 130 187 0 chr9 21813738 21813861 -102262311 + B1_Mur2 SINE Alu 1 146 -3 1 751 243 88 0 0 chr9 21813869 21813903 -102262269 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 1 751 657 269 14 0 chr9 21814318 21814463 -102261709 - RSINE1 SINE B4 -17 148 2 1 751 396 147 0 0 chr9 21815956 21816031 -102260141 + (GGA)n Simple_repeat Simple_repeat 2 76 0 1 751 428 250 184 0 chr9 21816877 21817013 -102259159 + ID_B1 SINE B4 57 217 -7 1 751 294 200 31 0 chr9 21817632 21817735 -102258437 - PB1D9 SINE Alu -27 123 14 1 751 856 35 9 0 chr9 21817773 21817887 -102258285 - B1_Mus2 SINE Alu -1 146 32 1 751 1331 83 5 35 chr9 21817905 21818105 -102258067 - B2_Mm2 SINE B2 0 195 2 1 751 214 364 11 0 chr9 21818181 21818269 -102257903 - ID_B1 SINE B4 -124 100 12 1 751 246 253 228 0 chr9 21818705 21818784 -102257388 - B1F SINE Alu -52 97 1 1 751 1023 65 14 42 chr9 21819024 21819168 -102257004 - B1_Mus1 SINE Alu -6 142 3 1 751 273 224 0 62 chr9 21820568 21820730 -102255442 + T-rich Low_complexity Low_complexity 1 152 0 1 751 913 232 52 9 chr9 21821605 21821818 -102254354 - ID_B1 SINE B4 -1 223 2 1 751 279 79 0 0 chr9 21822085 21822123 -102254049 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 751 231 133 0 0 chr9 21822215 21822260 -102253912 + (T)n Simple_repeat Simple_repeat 1 45 0 1 751 531 45 0 0 chr9 21822851 21822917 -102253255 + (TC)n Simple_repeat Simple_repeat 2 67 0 1 751 220 299 0 83 chr9 21823684 21823768 -102252404 - PB1D10 SINE Alu -39 78 2 1 751 219 322 0 75 chr9 21823686 21823780 -102252392 - ID_B1 SINE B4 -67 157 71 1 751 365 244 26 0 chr9 21823821 21823899 -102252273 - ID_B1 SINE B4 -132 92 13 1 751 562 68 11 11 chr9 21823943 21824032 -102252140 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 751 301 282 59 0 chr9 21824180 21824265 -102251907 + MER44C DNA MER2_type 23 112 -621 1 751 452 226 148 0 chr9 21824320 21824435 -102251737 - B1_Mus2 SINE Alu 0 147 16 1 751 822 254 44 10 chr9 21824455 21824658 -102251514 - B3 SINE B2 -5 211 2 1 751 355 287 0 27 chr9 21824671 21824782 -102251390 - PB1D10 SINE Alu 0 117 10 1 751 200 128 26 0 chr9 21824790 21824829 -102251343 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1 751 360 0 0 0 chr9 21824886 21824926 -102251246 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 751 667 196 24 60 chr9 21824973 21825141 -102251031 - RSINE1 SINE B4 0 165 4 1 751 712 83 18 0 chr9 21825305 21825414 -102250758 + (TC)n Simple_repeat Simple_repeat 2 112 0 1 751 367 189 156 0 chr9 21825433 21825523 -102250649 - B4A SINE B4 -188 104 1 1 751 482 305 0 64 chr9 21825549 21825705 -102250467 + ID_B1 SINE B4 79 220 -4 1 751 1275 65 0 0 chr9 21825714 21825884 -102250288 + (GAA)n Simple_repeat Simple_repeat 3 172 0 1 751 1389 76 0 10 chr9 21825892 21826713 -102249459 + (GGA)n Simple_repeat Simple_repeat 1 813 0 1 751 312 318 27 9 chr9 21826725 21826836 -102249336 + ID_B1 SINE B4 64 176 -48 1 751 512 204 48 0 chr9 21826747 21826850 -102249322 + PB1D9 SINE Alu 7 114 -6 1 751 201 346 0 25 chr9 21826850 21826930 -102249242 + GA-rich Low_complexity Low_complexity 1 78 0 1 751 743 282 129 7 chr9 21826968 21827247 -102248925 + MER44C DNA MER2_type 194 506 -227 1 751 310 307 53 0 chr9 21827332 21827446 -102248726 + ID_B1 SINE B4 99 218 -6 1 751 192 77 0 0 chr9 21827527 21827553 -102248619 + (CAT)n Simple_repeat Simple_repeat 3 28 0 1 751 714 108 67 0 chr9 21827562 21827682 -102248490 + B1_Mur4 SINE Alu 16 143 -7 1 751 383 155 70 0 chr9 21828445 21828516 -102247656 + ZP3AR Satellite Satellite 43 118 -94 1 751 693 192 218 11 chr9 21828654 21828833 -102247339 + B3 SINE B2 1 216 0 1 751 23 33 0 0 chr9 21828853 21828883 -102247289 + AT_rich Low_complexity Low_complexity 1 30 0 1 751 195 218 20 10 chr9 21829761 21829863 -102246309 + GA-rich Low_complexity Low_complexity 2 104 0 1 751 1221 189 195 3 chr9 21830032 21830350 -102245822 + MTD LTR MaLR 41 419 0 1 751 195 42 0 0 chr9 21830353 21830377 -102245795 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1 751 309 118 0 0 chr9 21830378 21830429 -102245743 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 751 271 273 0 0 chr9 21831296 21831318 -102244854 + ORR1B1-int LTR MaLR 627 648 -861 1 751 918 72 0 0 chr9 21831318 21831443 -102244729 + B1_Mus2 SINE Alu 2 126 -21 1 751 247 264 0 100 chr9 21831442 21831522 -102244650 + ID_B1 SINE B4 151 222 -2 1 751 275 274 23 35 chr9 21831552 21831639 -102244533 + RSINE1 SINE B4 44 129 -36 1 751 318 336 53 8 chr9 21831639 21831771 -102244401 - L1MEe LINE L1 -4011 843 706 1 751 715 204 34 27 chr9 21831788 21831934 -102244238 - B1_Mus2 SINE Alu 0 147 1 1 751 632 62 124 0 chr9 21831936 21832033 -102244139 + B1_Mus1 SINE Alu 37 145 -3 1 751 243 150 0 0 chr9 21832220 21832260 -102243912 + B1_Mur4 SINE Alu 41 80 -70 1 751 270 262 25 12 chr9 21832416 21832497 -102243675 + L2a LINE L2 2989 3070 -356 1 751 507 249 44 19 chr9 21832693 21832853 -102243319 - RSINE1 SINE B4 0 165 2 1 751 644 206 15 15 chr9 21833315 21833448 -102242724 + RSINE1 SINE B4 2 134 -31 1 751 422 219 93 19 chr9 21833559 21833666 -102242506 + B1_Mur1 SINE Alu 34 148 -1 1 751 656 235 29 0 chr9 21833760 21833896 -102242276 - B1_Mur1 SINE Alu -7 142 3 1 751 250 271 188 0 chr9 21833914 21833999 -102242173 - PB1D9 SINE Alu -19 101 1 1 751 340 316 28 42 chr9 21834174 21834316 -102241856 - B4A SINE B4 -127 165 26 1 751 2886 152 52 11 chr9 21834321 21834858 -102241314 + RMER15 LTR ERVL 15 573 -2 1 751 1899 240 135 4 chr9 21834860 21835416 -102240756 + RMER15-int LTR ERVL 1 629 -4370 1 751 336 263 72 21 chr9 21835408 21835505 -102240667 + RMER15-int LTR ERVL 778 879 -4120 1 751 3152 248 75 11 chr9 21835527 21836866 -102239306 + RMER15-int LTR ERVL 945 2369 -2630 1 751 324 228 17 137 chr9 21836867 21836984 -102239188 + MT2B LTR ERVL 154 256 -345 1 751 820 109 0 62 chr9 21836884 21837021 -102239151 + B1_Mur4 SINE Alu 9 137 -13 1 751 216 0 0 0 chr9 21837021 21837045 -102239127 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 751 1539 295 99 75 chr9 21837149 21837723 -102238449 + Lx8 LINE L1 6215 6772 -701 1 751 1129 122 175 0 chr9 21837723 21837912 -102238260 + URR1A DNA MER1_type 5 226 0 1 751 1539 295 99 75 chr9 21837912 21838135 -102238037 + Lx8 LINE L1 6773 7031 -442 1 751 2059 143 251 11 chr9 21838136 21838590 -102237582 + RMER15 LTR ERVL 13 575 0 1 751 598 236 148 6 chr9 21839081 21839243 -102236929 - ID_B1 SINE B4 -2 222 38 1 751 671 203 34 27 chr9 21839429 21839576 -102236596 - B1_Mur2 SINE Alu -1 148 1 1 751 572 290 73 59 chr9 21839576 21839650 -102236522 - B4 SINE B4 -215 77 1 1 751 330 260 13 0 chr9 21839669 21839746 -102236426 - ID4_ SINE ID -1 82 5 1 751 597 293 25 0 chr9 21840411 21840568 -102235604 + RSINE1 SINE B4 5 165 0 1 751 25 0 0 0 chr9 21841249 21841274 -102234898 + GC_rich Low_complexity Low_complexity 1 25 0 1 751 486 163 171 0 chr9 21841439 21841562 -102234610 - B1_Mur3 SINE Alu 0 149 6 1 751 554 75 0 12 chr9 21841581 21841662 -102234510 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 1 751 387 96 17 0 chr9 21841662 21841738 -102234434 - B1_Mur4 SINE Alu 0 150 41 1 751 352 301 70 19 chr9 21841762 21841918 -102234254 + RSINE1 SINE B4 2 165 0 1 751 646 261 7 7 chr9 21842043 21842182 -102233990 - ID_B1 SINE B4 0 224 86 1 751 228 325 13 0 chr9 21842220 21842297 -102233875 + ID4 SINE ID 2 79 -4 1 751 244 318 47 41 chr9 21842311 21842482 -102233690 + ORR1E LTR MaLR 23 169 -196 1 751 195 129 0 0 chr9 21842483 21842514 -102233658 + (CGGGGG)n Simple_repeat Simple_repeat 4 34 0 1 751 363 296 180 12 chr9 21842520 21842681 -102233491 + B3A SINE B2 1 188 -10 1 751 246 288 0 17 chr9 21842689 21842749 -102233423 + polypurine Low_complexity Low_complexity 6 64 0 1 751 356 158 27 0 chr9 21843180 21843253 -102232919 - B1_Mur4 SINE Alu -47 80 2 1 751 558 43 0 0 chr9 21843277 21843346 -102232826 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 1 751 1139 66 0 0 chr9 21843346 21843482 -102232690 - B1_Mm SINE Alu -10 137 2 1 751 369 259 15 9 chr9 21843639 21843741 -102232431 + B1_Mur1 SINE Alu 10 142 -7 1 751 1110 60 0 0 chr9 21843791 21843924 -102232248 + B1_Mm SINE Alu 1 133 -14 1 751 324 0 0 0 chr9 21843925 21843961 -102232211 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 751 231 167 0 0 chr9 21844142 21844184 -102231988 + T-rich Low_complexity Low_complexity 1 42 0 1 751 1033 124 29 110 chr9 21844314 21844489 -102231683 + B2_Mm2 SINE B2 3 170 -25 1 751 1305 27 0 0 chr9 21844489 21844635 -102231537 - B1_Mus1 SINE Alu -2 146 1 1 751 1033 124 29 110 chr9 21844635 21844668 -102231504 + B2_Mm2 SINE B2 171 194 -1 1 751 580 65 97 0 chr9 21844719 21844812 -102231360 - B1_Mur4 SINE Alu 0 150 49 1 751 485 213 9 69 chr9 21844812 21844928 -102231244 + PB1D9 SINE Alu 11 119 -1 1 751 346 268 11 11 chr9 21844968 21845055 -102231117 + PB1D10 SINE Alu 24 110 -7 1 751 748 220 77 43 chr9 21845066 21845275 -102230897 + B3 SINE B2 1 216 0 1 751 730 224 11 85 chr9 21845366 21845478 -102230694 + RSINE1 SINE B4 3 115 -50 1 751 1326 104 10 5 chr9 21845478 21845672 -102230500 - B2_Mm2 SINE B2 0 195 1 1 751 730 224 11 85 chr9 21845672 21845735 -102230437 + RSINE1 SINE B4 116 165 0 1 751 329 283 89 24 chr9 21845849 21845972 -102230200 + ID_B1 SINE B4 86 216 -8 1 751 347 254 83 58 chr9 21845992 21846113 -102230059 + RSINE1 SINE B4 3 126 -39 1 751 366 23 0 0 chr9 21846125 21846168 -102230004 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 751 292 267 53 0 chr9 21846219 21846294 -102229878 + ID4_ SINE ID 4 82 -1 1 751 321 225 549 0 chr9 21846401 21846543 -102229629 - ID_B1 SINE B4 -2 222 3 1 751 245 231 0 0 chr9 21846733 21846785 -102229387 - B1F1 SINE Alu -4 145 94 1 751 693 189 141 31 chr9 21846788 21846977 -102229195 - B3A SINE B2 0 216 12 1 751 540 200 88 0 chr9 21847014 21847139 -102229033 - B1_Mur4 SINE Alu -1 149 14 1 751 876 162 35 0 chr9 21847139 21847281 -102228891 + B1_Mus2 SINE Alu 1 147 0 1 751 498 212 16 41 chr9 21847317 21847440 -102228732 - ID_B1 SINE B4 0 224 105 1 751 320 257 14 0 chr9 21847446 21847520 -102228652 - PB1D10 SINE Alu -40 77 3 1 751 227 298 10 87 chr9 21847647 21847750 -102228422 + MT2B LTR ERVL 156 250 -351 1 751 470 220 20 0 chr9 21847664 21847764 -102228408 + PB1D9 SINE Alu 10 111 -9 1 751 231 326 68 68 chr9 21847793 21847835 -102228337 - B2_Mm2 SINE B2 -2 193 3 1 751 609 269 74 0 chr9 21847835 21847984 -102228188 - RSINE1 SINE B4 -2 163 4 1 751 237 33 0 0 chr9 21848144 21848174 -102227998 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1 751 1158 57 0 28 chr9 21848177 21848322 -102227850 - B1_Mus1 SINE Alu -6 142 2 1 751 348 229 36 0 chr9 21848375 21848458 -102227714 + RMER30 DNA MER1_type 2 87 -115 1 751 362 287 18 9 chr9 21848477 21848592 -102227580 - PB1D9 SINE Alu -3 117 2 1 751 252 252 74 83 chr9 21848687 21848808 -102227364 - MIRc SINE MIR -128 140 18 1 751 547 150 257 67 chr9 21848917 21849096 -102227076 + B3 SINE B2 4 216 0 1 751 282 297 26 51 chr9 21849102 21849219 -102226953 + MER117 DNA MER1_type 33 146 -51 1 751 611 222 23 45 chr9 21849272 21849404 -102226768 + RSINE1 SINE B4 2 130 -35 1 751 219 295 55 45 chr9 21850020 21850130 -102226042 + PB1D7 SINE Alu 3 113 -7 1 751 308 248 9 56 chr9 21850120 21850227 -102225945 + ID_B1 SINE B4 76 177 -47 1 751 325 236 43 11 chr9 21850141 21850235 -102225937 + PB1D10 SINE Alu 10 106 -11 1 751 207 0 0 0 chr9 21850235 21850258 -102225914 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 751 600 223 2 0 chr9 21850261 21850389 -102225783 + B1_Mur1 SINE Alu 1 130 -19 1 751 302 289 100 0 chr9 21850596 21850686 -102225486 + RSINE1 SINE B4 45 143 -22 1 751 357 248 17 68 chr9 21850775 21850892 -102225280 + PB1D10 SINE Alu 7 117 0 1 751 619 227 42 21 chr9 21850903 21851047 -102225125 + B1_Mur2 SINE Alu 2 148 -1 1 751 281 309 62 18 chr9 21851112 21851224 -102224948 + B3 SINE B2 71 187 -29 1 751 372 43 0 0 chr9 21851225 21851271 -102224901 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 751 286 254 106 26 chr9 21851299 21851412 -102224760 + RSINE1 SINE B4 3 124 -41 1 751 306 0 0 0 chr9 21851412 21851446 -102224726 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 751 435 68 0 0 chr9 21851446 21851504 -102224668 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 751 336 267 126 19 chr9 21851795 21851898 -102224274 - RSINE1 SINE B4 -41 124 11 1 751 265 336 88 34 chr9 21851910 21852058 -102224114 - ID_B1 SINE B4 -67 157 2 1 751 253 155 33 49 chr9 21852236 21852297 -102223875 + ID4 SINE ID 3 62 -21 1 751 257 295 7 159 chr9 21852332 21852477 -102223695 + MER117 DNA MER1_type 31 153 -44 1 751 344 285 0 0 chr9 21852574 21852660 -102223512 - ID4_ SINE ID -51 101 16 1 751 289 238 0 60 chr9 21852602 21852669 -102223503 - tRNA-Ala-GCY_ tRNA tRNA -8 67 5 1 751 440 233 117 0 chr9 21852794 21852897 -102223275 + RSINE1 SINE B4 16 130 -35 1 751 232 96 0 55 chr9 21853036 21853091 -102223081 + A-rich Low_complexity Low_complexity 5 56 0 1 751 816 150 63 21 chr9 21853380 21853523 -102222649 - B1_Mur2 SINE Alu 0 149 1 1 751 189 107 0 0 chr9 21853622 21853650 -102222522 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 751 450 244 70 8 chr9 21853655 21853783 -102222389 - RSINE1 SINE B4 -29 136 1 1 751 229 259 0 0 chr9 21854694 21854752 -102221420 - MIRm SINE MIR -136 140 83 1 751 235 318 106 0 chr9 21856912 21856997 -102219175 + B1F SINE Alu 33 126 -23 1 751 230 205 11 43 chr9 21857053 21857145 -102219027 + A-rich Low_complexity Low_complexity 2 90 0 1 751 277 222 79 20 chr9 21857149 21857250 -102218922 + PB1D10 SINE Alu 11 117 0 1 751 627 237 36 0 chr9 21857347 21857486 -102218686 - B1_Mus2 SINE Alu -1 146 3 1 751 249 289 0 84 chr9 21857486 21857545 -102218627 + RSINE1 SINE B4 52 103 -62 1 751 477 50 0 0 chr9 21857553 21857613 -102218559 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 751 645 213 182 21 chr9 21857638 21857830 -102218342 + ID_B1 SINE B4 2 224 0 1 751 38 0 0 0 chr9 21858191 21858229 -102217943 + AT_rich Low_complexity Low_complexity 1 38 0 1 751 306 0 0 0 chr9 21858431 21858465 -102217707 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 751 702 0 0 0 chr9 21858466 21858544 -102217628 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 751 476 297 6 57 chr9 21858547 21858704 -102217468 - RSINE1 SINE B4 -14 151 3 1 751 678 59 69 0 chr9 21858719 21858820 -102217352 - B1_Mm SINE Alu 0 147 40 1 751 349 305 32 0 chr9 21862889 21862984 -102213188 + B4 SINE B4 4 101 -191 1 751 619 223 68 25 chr9 21863004 21863165 -102213007 + B3 SINE B2 49 216 0 1 751 232 250 130 14 chr9 21863187 21863254 -102212918 + RSINE1 SINE B4 6 80 -85 1 751 806 228 5 22 chr9 21863254 21863438 -102212734 + ORR1D2 LTR MaLR 1 181 -189 1 751 473 319 12 0 chr9 21863445 21863605 -102212567 + (CA)n Simple_repeat Simple_repeat 1 162 0 1 751 884 225 45 0 chr9 21863761 21863939 -102212233 + B3 SINE B2 2 187 -29 1 751 333 0 0 0 chr9 21863939 21863976 -102212196 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 751 662 263 7 0 chr9 21863978 21864115 -102212057 - B1_Mur3 SINE Alu -10 139 2 1 751 898 227 56 0 chr9 21864157 21864355 -102211817 + ID_B1 SINE B4 13 221 -3 1 751 273 291 144 55 chr9 21864252 21864376 -102211796 + RLTR25B LTR ERVK 286 537 -486 1 751 587 149 37 0 chr9 21864376 21864483 -102211689 + B1_Mur4 SINE Alu 35 145 -5 1 751 249 254 27 27 chr9 21864480 21864553 -102211619 + RSINE1 SINE B4 49 121 -44 1 751 225 262 204 9 chr9 21864640 21864748 -102211424 - MER2 DNA MER2_type -102 243 115 1 751 1053 77 35 7 chr9 21864795 21864939 -102211233 + B1_Mus1 SINE Alu 1 148 0 1 751 645 105 0 0 chr9 21864951 21865046 -102211126 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1 751 583 254 25 124 chr9 21865261 21865341 -102210831 - B4A SINE B4 -4 288 221 1 751 691 243 7 20 chr9 21865341 21865492 -102210680 - B1_Mur1 SINE Alu 0 149 1 1 751 583 260 84 82 chr9 21865492 21865688 -102210484 - B4A SINE B4 -64 228 1 1 751 492 285 70 33 chr9 21865879 21866093 -102210079 + L2 LINE L2 2487 2708 -711 1 751 1382 105 5 0 chr9 21866535 21866726 -102209446 + B2_Mm1a SINE B2 1 192 -1 1 751 291 208 0 122 chr9 21866726 21866808 -102209364 + RSINE1 SINE B4 94 165 0 1 751 847 221 0 0 chr9 21866831 21866976 -102209196 + B1_Mus2 SINE Alu 3 147 0 1 751 197 318 0 43 chr9 21867143 21867212 -102208960 + L2 LINE L2 3014 3079 -340 1 751 509 244 47 5 chr9 21867345 21867478 -102208694 + B3A SINE B2 20 160 -56 1 751 242 312 94 0 chr9 21867848 21867944 -102208228 + ORR1E LTR MaLR 2 106 -253 1 751 275 286 23 27 chr9 21868303 21868416 -102207756 + PB1D10 SINE Alu 5 122 -5 1 751 211 234 91 30 chr9 21868414 21868480 -102207692 + ID4 SINE ID 14 83 0 1 751 397 285 30 30 chr9 21869309 21869443 -102206729 + B1F SINE Alu 15 148 -1 1 751 1359 110 16 0 chr9 21869450 21869641 -102206531 + B2_Mm2 SINE B2 1 194 -1 1 751 598 243 29 7 chr9 21869660 21869797 -102206375 + B1_Mur1 SINE Alu 2 141 -8 1 751 210 145 18 136 chr9 21870436 21870495 -102205677 - MIR SINE MIR -113 163 106 1 751 396 245 72 9 chr9 21870612 21870723 -102205449 - PB1D9 SINE Alu -1 119 2 1 751 1054 110 14 0 chr9 21870803 21870949 -102205223 + B1_Mur4 SINE Alu 3 150 0 1 751 267 282 53 27 chr9 21871155 21871314 -102204858 + L2a LINE L2 2954 3110 -316 1 751 217 362 17 2 chr9 21871372 21871479 -102204693 + L2a LINE L2 3238 3352 -74 1 751 200 302 16 16 chr9 21871505 21871569 -102204603 + MIR SINE MIR 36 99 -163 1 751 215 279 29 14 chr9 21871902 21871971 -102204201 + PB1D10 SINE Alu 46 115 -2 1 751 494 290 47 33 chr9 21871974 21872124 -102204048 + RSINE1 SINE B4 4 155 -10 1 751 383 273 55 0 chr9 21872165 21872275 -102203897 + ID_B1 SINE B4 20 135 -89 1 751 504 275 51 0 chr9 21872940 21873078 -102203094 + B1_Mur2 SINE Alu 4 148 -1 1 751 1481 53 10 31 chr9 21873081 21873241 -102202931 + B2_Mm1t SINE B2 1 160 -33 1 751 207 0 0 0 chr9 21873241 21873264 -102202908 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 751 1481 53 10 31 chr9 21873264 21873298 -102202874 + B2_Mm1t SINE B2 161 191 -2 1 751 390 298 46 0 chr9 21873301 21873432 -102202740 + ID_B1 SINE B4 26 162 -62 1 751 242 269 14 29 chr9 21873532 21873601 -102202571 - RSINE1 SINE B4 -21 144 77 1 751 288 0 0 0 chr9 21873708 21873740 -102202432 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 751 735 218 0 26 chr9 21873843 21873994 -102202178 - B1_Mur3 SINE Alu 0 149 3 1 751 1110 184 39 15 chr9 21874011 21874215 -102201957 - B3 SINE B2 -3 213 5 1 751 323 203 14 14 chr9 21874332 21874402 -102201770 - B1_Mur1 SINE Alu 0 149 80 1 751 342 286 242 10 chr9 21874551 21874749 -102201423 - RLTR42-int LTR ERVK -4122 1400 1157 1 751 252 86 0 0 chr9 21874920 21874955 -102201217 - MurSatRep1 Unknown Unknown -1866 271 237 1 751 694 242 80 11 chr9 21874977 21875168 -102201004 + B3 SINE B2 4 213 -3 1 751 264 324 15 7 chr9 21875677 21875814 -102200358 + C-rich Low_complexity Low_complexity 4 141 0 1 751 634 224 265 0 chr9 21876077 21876247 -102199925 + B3 SINE B2 2 216 0 1 751 449 309 8 0 chr9 21876270 21876396 -102199776 + RSINE1 SINE B4 4 130 -35 1 751 1198 35 14 0 chr9 21876440 21876581 -102199591 - B1_Mus2 SINE Alu 0 147 5 1 751 430 182 13 0 chr9 21877634 21877711 -102198461 - B1_Mur1 SINE Alu -29 120 43 1 751 207 0 0 0 chr9 21877711 21877734 -102198438 + (T)n Simple_repeat Simple_repeat 1 23 0 1 751 540 217 35 0 chr9 21877757 21877872 -102198300 - RSINE1 SINE B4 -36 129 11 1 751 250 328 0 0 chr9 21878525 21878615 -102197557 - ID4 SINE ID -62 90 1 1 751 232 238 30 45 chr9 21878577 21878643 -102197529 - ZP3AR Satellite Satellite -132 80 16 1 751 244 222 15 45 chr9 21878629 21878695 -102197477 - B1_Mur1 SINE Alu -11 138 75 1 751 534 205 71 9 chr9 21878706 21878819 -102197353 - PB1D9 SINE Alu 0 120 1 1 751 232 188 0 0 chr9 21878821 21878869 -102197303 + MLT1A1 LTR MaLR 345 392 -16 1 751 539 182 62 144 chr9 21879340 21879500 -102196672 - B1_Mur1 SINE Alu -1 148 2 1 751 567 283 54 34 chr9 21879538 21879743 -102196429 + ID_B1 SINE B4 1 209 -15 1 751 332 240 32 24 chr9 21879810 21879907 -102196265 + B3 SINE B2 92 187 -29 1 751 1242 116 28 6 chr9 21879907 21880089 -102196083 - B2_Mm2 SINE B2 -7 188 3 1 751 332 240 32 24 chr9 21880089 21880115 -102196057 + B3 SINE B2 188 215 -1 1 751 1628 47 0 0 chr9 21880175 21880367 -102195805 + B2_Mm1a SINE B2 2 193 0 1 751 24 53 0 0 chr9 21880367 21880405 -102195767 + AT_rich Low_complexity Low_complexity 1 38 0 1 751 342 309 7 5 chr9 21881237 21881351 -102194821 + PB1D10 SINE Alu 8 122 -27 1 751 465 270 31 8 chr9 21881445 21881572 -102194600 - ORR1D-int LTR MaLR -1240 130 1 1 751 1805 241 79 15 chr9 21881632 21882174 -102193998 + ORR1E-int LTR MaLR 847 1477 -315 1 751 490 257 130 34 chr9 21882179 21882467 -102193705 + ORR1E LTR MaLR 1 363 -7 1 751 461 243 0 65 chr9 21882840 21882963 -102193209 - PB1D10 SINE Alu 0 117 3 1 751 235 271 43 76 chr9 21882882 21882974 -102193198 - MT2B2 LTR ERVL -343 241 153 1 751 226 233 0 0 chr9 21882991 21883034 -102193138 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 751 414 287 112 0 chr9 21883038 21883181 -102192991 - RSINE1 SINE B4 -4 161 3 1 751 1429 81 11 0 chr9 21883205 21883391 -102192781 - B2_Mm1a SINE B2 -5 188 1 1 751 1172 54 7 13 chr9 21883551 21883700 -102192472 - B1_Mus1 SINE Alu 0 148 1 1 751 660 189 39 8 chr9 21883707 21883835 -102192337 - B1_Mur1 SINE Alu -5 144 13 1 751 527 192 39 0 chr9 21883826 21883930 -102192242 - B4 SINE B4 -61 231 124 1 751 1348 90 16 26 chr9 21883991 21884185 -102191987 + B2_Mm2 SINE B2 1 192 -3 1 751 494 234 28 0 chr9 21884313 21884420 -102191752 - RSINE1 SINE B4 -45 120 11 1 751 800 184 57 0 chr9 21884429 21884570 -102191602 - B1_Mur4 SINE Alu -1 149 1 1 751 839 252 19 14 chr9 21884592 21884801 -102191371 - B3 SINE B2 -6 210 1 1 751 228 241 49 37 chr9 21884802 21884884 -102191288 - RSINE1 SINE B4 -72 93 11 1 751 541 182 48 24 chr9 21884997 21885121 -102191051 + B1_Mur3 SINE Alu 3 129 -20 1 751 713 290 156 57 chr9 21885103 21885545 -102190627 + RLTR18 LTR ERVK 78 563 -53 1 751 1240 48 0 7 chr9 21885552 21885700 -102190472 - B1_Mus1 SINE Alu -1 147 1 1 751 453 261 97 19 chr9 21885792 21886034 -102190138 - L1M4 LINE L1 -2190 3956 3695 1 751 480 35 0 0 chr9 21886034 21886092 -102190080 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 1 751 759 75 20 20 chr9 21886092 21886242 -102189930 - RMER17B LTR ERVK -498 460 311 1 751 227 215 46 0 chr9 21886251 21886316 -102189856 - L1MC LINE L1 -2456 3690 3623 1 751 405 232 107 80 chr9 21886316 21886488 -102189684 + ID_B1 SINE B4 57 224 0 1 751 1165 62 0 14 chr9 21886490 21886638 -102189534 + B1_Mus1 SINE Alu 1 146 -2 1 751 570 264 12 30 chr9 21886689 21886853 -102189319 + RSINE1 SINE B4 3 163 -2 1 751 198 0 0 0 chr9 21886867 21886889 -102189283 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 751 380 241 88 44 chr9 21886902 21887015 -102189157 + PB1D9 SINE Alu 1 118 -2 1 751 604 220 121 0 chr9 21887474 21887648 -102188524 + ZP3AR Satellite Satellite 1 195 -3 1 751 821 247 118 41 chr9 21888144 21888414 -102187758 + B4 SINE B4 2 292 0 1 751 245 342 0 13 chr9 21888434 21888445 -102187727 + B4A SINE B4 77 86 -206 1 751 543 210 24 48 chr9 21888445 21888570 -102187602 + B1F2 SINE Alu 2 123 -26 1 751 355 254 69 17 chr9 21888726 21888842 -102187330 + RSINE1 SINE B4 43 164 -1 1 93 937 63 93 1 chr9 21888969 21889118 -102187054 - B1_Mus2 SINE Alu 0 147 8 1 752 429 210 19 74 chr9 21889151 21889259 -102186913 + PB1D10 SINE Alu 13 114 -3 1 752 233 229 0 103 chr9 21890140 21890208 -102185964 - ID4_ SINE ID -22 61 1 1 752 501 243 0 0 chr9 21890259 21890370 -102185802 - PB1 SINE Alu -8 119 9 1 752 412 264 77 8 chr9 21890410 21890540 -102185632 - RSINE1 SINE B4 0 165 27 1 752 343 272 62 0 chr9 21890881 21890962 -102185210 - RSINE1 SINE B4 -78 87 2 1 752 284 70 0 23 chr9 21890975 21891019 -102185153 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 752 1152 62 0 20 chr9 21891019 21891161 -102185011 - B1_Mus1 SINE Alu -7 141 3 1 752 791 274 53 0 chr9 21891166 21891374 -102184798 - ID_B1 SINE B4 -4 220 2 1 752 318 224 0 50 chr9 21891374 21891454 -102184718 - B1_Mur1 SINE Alu 0 149 74 1 752 344 205 0 21 chr9 21891832 21891903 -102184269 + MurERV4-int LTR ERVK 1737 1849 -3411 1 752 3393 77 41 15 chr9 21891958 21892223 -102183949 - MT2C_Mm LTR ERVL 0 475 217 1 752 426 39 0 0 chr9 21892223 21892275 -102183897 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 752 3393 77 41 15 chr9 21892275 21892472 -102183700 - MT2C_Mm LTR ERVL -259 216 2 1 752 409 261 107 0 chr9 21892577 21892723 -102183449 + ID_B1 SINE B4 96 256 -36 1 752 451 240 0 20 chr9 21892806 21892908 -102183264 + B1_Mur1 SINE Alu 42 141 -8 1 752 303 292 26 70 chr9 21893010 21893124 -102183048 + MLT1A1 LTR MaLR 300 408 0 1 752 1489 73 16 5 chr9 21893386 21893579 -102182593 - B2_Mm2 SINE B2 0 195 1 1 752 710 88 0 0 chr9 21893580 21893671 -102182501 - 4.5SRNA scRNA scRNA -3 91 1 1 752 480 242 15 36 chr9 21893677 21893690 -102182482 - ID_B1 SINE B4 -7 217 205 1 752 450 0 0 0 chr9 21893690 21893740 -102182432 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1 752 721 180 0 0 chr9 21893741 21893863 -102182309 - B1_Mur1 SINE Alu -25 124 3 1 752 615 199 42 42 chr9 21893872 21894014 -102182158 - B3A SINE B2 -1 197 56 1 752 275 220 0 33 chr9 21894128 21894189 -102181983 + tRNA-Ala-GCY_ tRNA tRNA 5 63 -12 1 752 343 290 21 28 chr9 21894550 21894692 -102181480 + L1MD3 LINE L1 7425 7565 -430 1 752 428 240 0 40 chr9 21894822 21894922 -102181250 + PB1D10 SINE Alu 21 116 -1 1 752 529 262 103 63 chr9 21894966 21895141 -102181031 + B3A SINE B2 2 183 -15 1 752 1003 120 59 59 chr9 21895188 21895248 -102180924 + B2_Mm2 SINE B2 1 56 -139 1 752 3204 32 0 235 chr9 21895248 21895818 -102180354 - RLTR10C LTR ERVK 0 436 1 1 752 1003 120 59 59 chr9 21895818 21895943 -102180229 + B2_Mm2 SINE B2 57 186 -9 1 752 320 64 0 21 chr9 21896023 21896071 -102180101 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 752 525 239 36 82 chr9 21896089 21896308 -102179864 - B4A SINE B4 -1 291 83 1 752 888 177 0 20 chr9 21896322 21896472 -102179700 - B1_Mur3 SINE Alu -2 147 1 1 752 3301 36 18 8 chr9 21896495 21896887 -102179285 + MTA_Mm LTR MaLR 1 396 0 1 752 324 0 0 0 chr9 21897351 21897387 -102178785 + (A)n Simple_repeat Simple_repeat 1 36 0 1 752 634 243 56 0 chr9 21897429 21897573 -102178599 + RSINE1 SINE B4 2 153 -12 1 752 369 62 0 0 chr9 21897573 21897621 -102178551 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 1 752 220 286 103 35 chr9 21897739 21897826 -102178346 + ID_B1 SINE B4 86 178 -46 1 752 266 319 171 14 chr9 21897848 21897988 -102178184 - RSINE1 SINE B4 -2 163 2 1 752 1477 192 62 96 chr9 21898102 21898487 -102177685 - ORR1D1 LTR MaLR -2 372 1 1 752 805 19 19 0 chr9 21898582 21898685 -102177487 + (TTC)n Simple_repeat Simple_repeat 3 107 0 1 752 540 111 0 0 chr9 21898687 21898768 -102177404 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 1 752 1188 55 14 0 chr9 21898791 21898936 -102177236 - B1_Mus1 SINE Alu 0 148 2 1 752 3405 115 29 10 chr9 21898974 21899720 -102176452 - Lx5 LINE L1 -936 6114 5347 1 752 209 135 27 0 chr9 21899859 21899896 -102176276 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1 752 514 125 321 0 chr9 21899899 21900011 -102176161 - B1_Mus1 SINE Alu 0 148 1 1 752 194 0 39 0 chr9 21900023 21900049 -102176123 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 752 1287 20 7 0 chr9 21900056 21900202 -102175970 - B1_Mm SINE Alu 0 147 1 1 752 553 189 25 0 chr9 21900227 21900349 -102175823 - ID_B1 SINE B4 0 224 100 1 752 243 157 0 0 chr9 21900865 21900916 -102175256 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1 752 387 0 0 0 chr9 21900983 21901026 -102175146 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 752 422 88 0 14 chr9 21901036 21901105 -102175067 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 752 261 272 17 112 chr9 21901156 21901272 -102174900 + MT2B LTR ERVL 138 242 -359 1 752 394 183 53 11 chr9 21901204 21901298 -102174874 + PB1D9 SINE Alu 17 114 -6 1 752 819 226 55 0 chr9 21901300 21901481 -102174691 - B3A SINE B2 -5 193 3 1 752 489 258 16 0 chr9 21901622 21901750 -102174422 + ID_B1 SINE B4 84 213 -11 1 752 435 38 0 0 chr9 21901793 21901846 -102174326 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 752 633 226 57 0 chr9 21901851 21901975 -102174197 - RSINE1 SINE B4 -32 133 3 1 752 526 220 0 8 chr9 21902147 21902266 -102173906 - PB1D9 SINE Alu -1 119 2 1 752 816 240 88 0 chr9 21902533 21902737 -102173435 - ID_B1 SINE B4 -2 222 1 1 752 315 71 0 0 chr9 21902761 21902803 -102173369 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 752 414 0 0 0 chr9 21902887 21902933 -102173239 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 752 315 0 0 0 chr9 21902933 21902967 -102173205 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 752 506 229 19 0 chr9 21902976 21903081 -102173091 - B1F SINE Alu -32 117 11 1 752 226 336 15 103 chr9 21902989 21903125 -102173047 - MT2B LTR ERVL -344 257 134 1 752 200 403 45 32 chr9 21903167 21903321 -102172851 - MIRb SINE MIR -3 265 110 1 752 182 296 0 0 chr9 21904219 21904263 -102171909 - MIRc SINE MIR -113 155 112 1 752 339 280 29 20 chr9 21906122 21906224 -102169948 + PB1D10 SINE Alu 9 111 -6 1 752 594 273 68 6 chr9 21906246 21906423 -102169749 + ID_B1 SINE B4 24 211 -13 1 752 387 0 0 0 chr9 21906425 21906468 -102169704 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 1 752 212 273 18 0 chr9 21906484 21906539 -102169633 + B4A SINE B4 2 57 -235 1 752 701 310 25 29 chr9 21906558 21906834 -102169338 + B4A SINE B4 3 277 -15 1 752 438 282 9 0 chr9 21906924 21907034 -102169138 - RSINE1 SINE B4 -21 144 34 1 752 378 212 128 12 chr9 21907030 21907114 -102169058 + B4 SINE B4 134 227 -65 1 752 358 294 26 65 chr9 21907114 21907267 -102168905 + RSINE1 SINE B4 2 148 -17 1 752 290 310 0 12 chr9 21907266 21907351 -102168821 + B4 SINE B4 207 290 -2 1 752 505 307 62 56 chr9 21907436 21907598 -102168574 - RSINE1 SINE B4 0 165 3 1 752 305 259 0 12 chr9 21907641 21907723 -102168449 - B3 SINE B2 -135 81 1 1 752 388 277 26 9 chr9 21907726 21907839 -102168333 - PB1D10 SINE Alu 0 117 3 1 752 620 261 7 7 chr9 21908443 21908586 -102167586 + RSINE1 SINE B4 3 145 -20 1 752 214 338 13 25 chr9 21908851 21908930 -102167242 - ID2 SINE ID -5 78 1 1 752 369 341 29 80 chr9 21909014 21909253 -102166919 - B4A SINE B4 -38 254 28 1 752 798 30 0 0 chr9 21909260 21909361 -102166811 - B1_Mus2 SINE Alu -46 101 1 1 752 268 279 35 11 chr9 21909402 21909489 -102166683 - PB1D10 SINE Alu -2 115 27 1 752 848 124 0 6 chr9 21909503 21909682 -102166490 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 752 230 277 0 4 chr9 21909683 21909753 -102166419 - B3 SINE B2 -37 161 93 1 752 189 147 0 0 chr9 21909969 21910003 -102166169 + (CTGGGG)n Simple_repeat Simple_repeat 2 35 0 1 752 1121 174 75 0 chr9 21910414 21910615 -102165557 - B3 SINE B2 0 216 1 1 752 665 194 145 36 chr9 21910645 21910838 -102165334 - B3 SINE B2 0 216 3 1 752 378 91 0 0 chr9 21910879 21910934 -102165238 + (TCC)n Simple_repeat Simple_repeat 1 55 0 1 752 370 202 27 146 chr9 21911014 21911090 -102165082 - B4 SINE B4 -1 291 228 1 752 873 151 13 27 chr9 21911090 21911240 -102164932 - B1_Mur3 SINE Alu 0 149 2 1 752 370 202 27 146 chr9 21911240 21911273 -102164899 - B4 SINE B4 -65 227 195 1 752 925 194 90 29 chr9 21911291 21911535 -102164637 - MTD LTR MaLR -21 398 140 1 752 372 226 71 51 chr9 21911545 21911643 -102164529 - ID_B1 SINE B4 -10 214 115 1 752 294 282 0 139 chr9 21911646 21911790 -102164382 - PB1 SINE Alu -2 125 2 1 752 663 152 0 35 chr9 21911816 21911932 -102164240 - B1_Mur1 SINE Alu -1 148 37 1 752 427 247 177 91 chr9 21911932 21912023 -102164149 - B4 SINE B4 -61 229 5 1 752 453 271 34 89 chr9 21913266 21913412 -102162760 + RSINE1 SINE B4 3 140 -25 1 752 23 33 0 0 chr9 21913428 21913458 -102162714 + AT_rich Low_complexity Low_complexity 1 30 0 1 752 609 210 0 24 chr9 21913915 21914042 -102162130 - B1_Mur3 SINE Alu 0 149 26 1 752 480 278 180 43 chr9 21914770 21915026 -102161146 - B4 SINE B4 0 292 2 1 752 1107 50 43 0 chr9 21915153 21915293 -102160879 + B1_Mus2 SINE Alu 2 147 0 1 752 643 228 69 0 chr9 21915748 21915893 -102160279 + B3A SINE B2 1 155 -43 1 752 399 176 119 9 chr9 21915900 21916009 -102160163 + B3 SINE B2 87 207 -9 1 752 405 198 115 90 chr9 21916231 21916353 -102159819 - RSINE1 SINE B4 0 165 41 1 752 27 0 0 0 chr9 21916367 21916394 -102159778 + AT_rich Low_complexity Low_complexity 1 27 0 1 752 561 62 25 0 chr9 21916394 21916475 -102159697 - B1_Mus2 SINE Alu 0 147 65 1 752 348 216 6 0 chr9 21916475 21916548 -102159624 - B1_Mur1 SINE Alu -21 128 52 1 752 599 215 139 0 chr9 21916560 21916704 -102159468 + B3A SINE B2 14 177 -21 1 752 929 248 19 0 chr9 21916771 21916985 -102159187 - B4 SINE B4 -72 220 3 1 752 323 290 79 0 chr9 21917085 21917181 -102158991 + PB1D7 SINE Alu 9 111 -9 1 752 338 202 75 12 chr9 21917192 21917272 -102158900 + B1_Mus1 SINE Alu 2 86 -62 1 752 312 48 0 0 chr9 21917303 21917345 -102158827 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 1 752 274 331 68 99 chr9 21918775 21918966 -102157206 + B4 SINE B4 2 186 -106 1 752 265 278 14 27 chr9 21918976 21919050 -102157122 + RSINE1 SINE B4 78 150 -15 1 752 323 250 77 39 chr9 21919097 21919201 -102156971 - PB1D9 SINE Alu -12 108 1 1 752 582 229 89 30 chr9 21919206 21919341 -102156831 - B1_Mur1 SINE Alu -6 143 1 1 752 22 35 0 0 chr9 21919611 21919640 -102156532 + AT_rich Low_complexity Low_complexity 1 29 0 1 752 1445 63 32 0 chr9 21919662 21919851 -102156321 + B2_Mm2 SINE B2 1 195 0 1 752 1247 41 0 7 chr9 21919869 21920017 -102156155 - B1_Mus1 SINE Alu 0 148 2 1 752 885 112 0 76 chr9 21920046 21920191 -102155981 - B1_Mur4 SINE Alu -15 135 2 1 752 321 298 34 34 chr9 21920806 21920924 -102155248 + RSINE1 SINE B4 15 132 -33 1 752 261 0 0 0 chr9 21921023 21921052 -102155120 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 752 374 232 37 0 chr9 21921157 21921246 -102154926 + L2a LINE L2 3284 3426 0 1 752 1824 103 7 21 chr9 21922005 21922292 -102153880 - MT2B2 LTR ERVL 0 584 302 1 752 519 249 112 36 chr9 21922293 21922489 -102153683 + B4A SINE B4 32 242 -50 1 752 378 0 0 0 chr9 21922600 21922642 -102153530 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 752 396 254 80 22 chr9 21922770 21922907 -102153265 + B1_Mur1 SINE Alu 5 149 0 1 752 447 294 34 0 chr9 21922965 21923084 -102153088 - MTE2b LTR MaLR -26 353 231 1 752 382 202 117 0 chr9 21923081 21923175 -102152997 - PB1D7 SINE Alu -15 105 1 1 752 253 264 0 52 chr9 21923287 21923383 -102152789 + PB1D10 SINE Alu 25 115 -2 1 752 285 369 28 28 chr9 21923387 21923532 -102152640 + B1_Mm SINE Alu 1 145 -2 1 752 394 352 14 14 chr9 21923536 21923683 -102152489 + RSINE1 SINE B4 3 149 -16 1 752 222 37 0 0 chr9 21923683 21923710 -102152462 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 752 473 214 117 0 chr9 21923721 21923824 -102152348 + PB1D9 SINE Alu 1 115 -5 1 752 234 279 73 0 chr9 21923831 21923899 -102152273 + ID4_ SINE ID 1 73 -10 1 752 1723 171 105 8 chr9 21924286 21924658 -102151514 + MTD LTR MaLR 12 419 0 1 752 307 167 22 0 chr9 21924848 21924938 -102151234 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 752 1152 281 58 47 chr9 21924942 21925427 -102150745 + RLTR40 LTR ERVK 281 770 -47 1 752 582 275 15 0 chr9 21925419 21925550 -102150622 - B1F SINE Alu -10 139 7 1 752 439 117 261 67 chr9 21925566 21925685 -102150487 + B1_Mus1 SINE Alu 5 146 -2 1 752 213 65 0 0 chr9 21925688 21925719 -102150453 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 752 180 77 0 0 chr9 21925721 21925747 -102150425 + (TCCA)n Simple_repeat Simple_repeat 2 27 0 1 752 857 93 101 0 chr9 21925824 21925963 -102150209 + B2_Mm1a SINE B2 2 154 -39 1 752 882 95 0 0 chr9 21925963 21926089 -102150083 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 1 752 555 226 24 0 chr9 21926347 21926471 -102149701 - RSINE1 SINE B4 -37 128 2 1 752 394 279 87 88 chr9 21926840 21926861 -102149311 - ID_B1 SINE B4 -44 248 206 1 752 626 181 102 0 chr9 21926861 21926988 -102149184 - B1_Mur2 SINE Alu 0 149 10 1 752 394 279 87 88 chr9 21926988 21927012 -102149160 - ID_B1 SINE B4 -44 205 75 1 752 217 388 0 0 chr9 21927012 21927092 -102149080 + ID4 SINE ID 1 80 -3 1 752 290 253 40 0 chr9 21927409 21927484 -102148688 - ID4 SINE ID -4 79 2 1 752 507 161 0 0 chr9 21927484 21927565 -102148607 - ZP3AR Satellite Satellite -117 95 15 1 752 326 241 11 33 chr9 21927644 21927734 -102148438 + ID_B1 SINE B4 39 126 -98 1 752 261 270 27 0 chr9 21927878 21927952 -102148220 + (CATG)n Simple_repeat Simple_repeat 4 79 0 1 752 291 257 37 73 chr9 21928128 21928237 -102147935 + PB1D10 SINE Alu 1 105 -12 1 752 24 32 0 0 chr9 21928352 21928383 -102147789 + AT_rich Low_complexity Low_complexity 1 31 0 1 752 446 208 119 8 chr9 21928413 21928539 -102147633 - RSINE1 SINE B4 0 165 26 1 752 980 206 66 61 chr9 21928548 21928588 -102147584 - B3 SINE B2 -2 214 184 1 752 1428 76 16 5 chr9 21928588 21928774 -102147398 - B2_Mm2 SINE B2 -7 188 1 1 752 980 206 66 61 chr9 21928774 21928945 -102147227 - B3 SINE B2 -33 183 2 1 752 297 252 124 57 chr9 21928990 21929095 -102147077 - ID_B1 SINE B4 -110 114 3 1 752 873 201 0 0 chr9 21929118 21929267 -102146905 - B1_Mur3 SINE Alu 0 149 1 1 752 607 239 8 0 chr9 21929277 21929407 -102146765 - ID_B1 SINE B4 -8 216 86 1 752 390 346 24 42 chr9 21929689 21929855 -102146317 + ID_B1 SINE B4 16 178 -46 1 752 306 301 34 75 chr9 21929853 21930000 -102146172 + B3 SINE B2 75 215 -1 1 752 24 0 0 0 chr9 21930008 21930032 -102146140 + AT_rich Low_complexity Low_complexity 1 24 0 1 752 520 320 73 0 chr9 21930032 21930238 -102145934 + ID_B1 SINE B4 3 223 -1 1 752 555 257 7 14 chr9 21930372 21930510 -102145662 - B1_Mur1 SINE Alu -7 142 6 1 752 377 221 43 111 chr9 21930598 21930715 -102145457 + PB1D10 SINE Alu 1 109 -8 1 752 207 0 0 0 chr9 21930715 21930738 -102145434 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 752 214 259 16 65 chr9 21930738 21930800 -102145372 + ID4 SINE ID 3 61 -22 1 752 540 119 34 3 chr9 21930800 21930924 -102145248 + B1_Mm SINE Alu 16 149 0 1 752 515 292 11 75 chr9 21930965 21931139 -102145033 + RSINE1 SINE B4 3 165 0 1 752 280 269 39 0 chr9 21931867 21931945 -102144227 - ID2 SINE ID -2 81 1 1 752 540 121 0 0 chr9 21931945 21932028 -102144144 - ZP3AR Satellite Satellite -117 95 13 1 752 233 195 0 0 chr9 21932586 21932627 -102143545 - B2_Mm2 SINE B2 -100 95 55 1 752 342 0 0 0 chr9 21932649 21932687 -102143485 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 752 207 0 0 0 chr9 21932996 21933019 -102143153 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 752 421 289 38 30 chr9 21933036 21933168 -102143004 - RSINE1 SINE B4 -28 137 5 1 752 484 234 35 42 chr9 21933172 21933315 -102142857 - B4A SINE B4 -59 233 92 1 752 375 231 77 0 chr9 21933318 21933422 -102142750 - B4A SINE B4 -165 127 16 1 752 403 333 0 18 chr9 21933448 21933558 -102142614 + PB1D10 SINE Alu 3 110 -7 1 752 529 250 83 0 chr9 21933563 21933695 -102142477 + ID_B1 SINE B4 82 224 0 1 752 416 260 94 8 chr9 21933707 21933835 -102142337 + RSINE1 SINE B4 2 140 -25 1 752 360 88 0 0 chr9 21933850 21933907 -102142265 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 752 350 196 9 93 chr9 21934654 21934761 -102141411 + ID_B1 SINE B4 84 181 -43 1 752 281 270 50 67 chr9 21934657 21934776 -102141396 + PB1D10 SINE Alu 1 117 0 1 752 324 0 0 0 chr9 21934809 21934845 -102141327 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 752 305 208 252 30 chr9 21935439 21935538 -102140634 - ID_B1 SINE B4 -2 222 102 1 752 203 171 0 0 chr9 21936007 21936048 -102140124 - MIRc SINE MIR -144 124 84 1 752 502 246 190 0 chr9 21936839 21937018 -102139154 + ID_B1 SINE B4 1 213 -11 1 752 692 183 33 53 chr9 21937059 21937209 -102138963 + B1_Mus2 SINE Alu 1 147 0 1 752 437 230 110 8 chr9 21937255 21937382 -102138790 + RSINE1 SINE B4 3 142 -23 1 752 458 189 179 8 chr9 21937430 21937553 -102138619 + B1F SINE Alu 3 146 -3 1 752 620 235 30 12 chr9 21937663 21937862 -102138310 + B3A SINE B2 13 216 0 1 752 606 230 0 17 chr9 21937971 21938148 -102138024 + (CA)n Simple_repeat Simple_repeat 1 174 0 1 752 222 239 52 78 chr9 21938219 21938296 -102137876 + RSINE1 SINE B4 55 129 -36 1 752 1141 99 140 0 chr9 21938316 21938487 -102137685 - B2_Mm2 SINE B2 0 195 1 1 752 782 189 42 0 chr9 21938490 21938633 -102137539 - B1_Mur2 SINE Alu 0 149 1 1 752 22 0 0 0 chr9 21938687 21938709 -102137463 + AT_rich Low_complexity Low_complexity 1 22 0 1 752 383 0 21 0 chr9 21938732 21938779 -102137393 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 752 204 306 0 0 chr9 21938838 21938900 -102137272 + C-rich Low_complexity Low_complexity 1 62 0 1 752 317 223 126 0 chr9 21939088 21939191 -102136981 + PB1D10 SINE Alu 1 116 -1 1 752 219 69 0 0 chr9 21939397 21939426 -102136746 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 752 376 219 62 10 chr9 21939434 21939531 -102136641 - B1_Mur2 SINE Alu -41 108 7 1 752 469 261 9 9 chr9 21939552 21939668 -102136504 - PB1 SINE Alu -7 120 5 1 752 435 282 76 0 chr9 21939803 21939934 -102136238 - ID_B1 SINE B4 -1 223 83 1 752 355 214 56 0 chr9 21940456 21940545 -102135627 - ID_B1 SINE B4 -1 223 130 1 752 627 14 0 0 chr9 21940808 21940880 -102135292 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 752 416 168 168 130 chr9 21940894 21941030 -102135142 + B2_Mm2 SINE B2 4 149 -46 1 752 222 37 0 0 chr9 21941030 21941057 -102135115 + (CATA)n Simple_repeat Simple_repeat 4 30 0 1 752 416 168 168 130 chr9 21941057 21941105 -102135067 + B2_Mm2 SINE B2 150 195 0 1 752 454 343 64 20 chr9 21941120 21941370 -102134802 - MT2A LTR ERVL -82 451 191 1 752 933 354 18 18 chr9 21941781 21942172 -102134000 - RLTR22_Mur LTR ERVK -1043 805 415 1 752 593 226 0 0 chr9 21942362 21942477 -102133695 - ID_B1 SINE B4 -17 207 93 1 752 273 119 0 0 chr9 21942586 21942628 -102133544 + (T)n Simple_repeat Simple_repeat 1 42 0 1 752 1043 65 64 21 chr9 21942628 21942769 -102133403 - B1_Mus2 SINE Alu 0 147 1 1 752 221 211 70 0 chr9 21942868 21942925 -102133247 - B1_Mm SINE Alu -57 90 30 1 752 429 291 67 0 chr9 21943247 21943381 -102132791 + ID_B1 SINE B4 81 223 -1 1 752 426 214 133 0 chr9 21943411 21943509 -102132663 + B1_Mur2 SINE Alu 22 132 -17 1 752 264 301 14 0 chr9 21943510 21943583 -102132589 + GA-rich Low_complexity Low_complexity 4 77 0 1 752 524 305 40 0 chr9 21943589 21943650 -102132522 + RSINE1 SINE B4 4 65 -100 1 752 2996 41 334 7 chr9 21943650 21944072 -102132100 + LTRIS2 LTR ERV1 5 564 0 1 752 577 298 40 0 chr9 21944072 21944161 -102132011 + RSINE1 SINE B4 66 159 -6 1 752 601 191 182 13 chr9 21944590 21944746 -102131426 - ID_B1 SINE B4 -5 219 37 1 752 429 250 48 32 chr9 21944746 21944914 -102131258 - MTD LTR MaLR 0 419 218 1 752 262 227 20 111 chr9 21944934 21945033 -102131139 - B4A SINE B4 -123 169 80 1 752 565 278 67 100 chr9 21945024 21945204 -102130968 - B3A SINE B2 0 198 20 1 752 1207 126 0 27 chr9 21945206 21945394 -102130778 - B2_Mm2 SINE B2 -10 185 3 1 752 519 242 80 0 chr9 21945427 21945567 -102130605 + B3A SINE B2 19 170 -46 1 752 300 53 0 0 chr9 21945581 21945619 -102130553 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 752 1268 48 0 0 chr9 21945635 21945781 -102130391 + B1_Mm SINE Alu 2 147 0 1 752 225 0 0 0 chr9 21945781 21945806 -102130366 + (A)n Simple_repeat Simple_repeat 1 25 0 1 752 1350 77 22 5 chr9 21945817 21946001 -102130171 + B2_Mm1t SINE B2 2 188 -5 1 752 216 0 0 0 chr9 21946016 21946040 -102130132 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1 752 1158 43 29 0 chr9 21946041 21946181 -102129991 - B1_Mus1 SINE Alu -4 144 1 1 752 1554 57 5 0 chr9 21946338 21946530 -102129642 + B2_Mm1a SINE B2 1 193 0 1 752 213 319 121 0 chr9 21946560 21946651 -102129521 - B4A SINE B4 -183 109 8 1 752 408 184 0 13 chr9 21946873 21946950 -102129222 - ID_B1 SINE B4 -12 212 137 1 752 252 232 293 0 chr9 21946950 21946972 -102129200 - B1F1 SINE Alu -12 137 10 1 752 1190 82 0 0 chr9 21946997 21947144 -102129028 + B1_Mus2 SINE Alu 1 147 0 1 752 206 0 69 0 chr9 21947144 21947173 -102128999 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 752 970 216 46 5 chr9 21947195 21947342 -102128830 + B3 SINE B2 1 154 -62 1 752 210 91 0 0 chr9 21947342 21947375 -102128797 + (CCCTAA)n Simple_repeat Simple_repeat 6 38 0 1 752 970 216 46 5 chr9 21947375 21947422 -102128750 + B3 SINE B2 155 203 -13 1 752 1059 34 0 169 chr9 21947472 21947649 -102128523 - B1_Mus2 SINE Alu 0 147 1 1 752 513 215 21 0 chr9 21947805 21947898 -102128274 + B1F SINE Alu 4 98 -51 1 752 275 289 87 9 chr9 21947909 21948024 -102128148 + MTB LTR MaLR 73 196 -204 1 752 845 227 21 16 chr9 21948192 21948380 -102127792 + B3A SINE B2 10 198 0 1 752 1062 266 136 21 chr9 21948512 21948842 -102127330 + MTD LTR MaLR 46 413 -6 1 752 1706 31 0 0 chr9 21948968 21949161 -102127011 + B2_Mm1a SINE B2 1 193 0 1 752 597 216 0 8 chr9 21949203 21949320 -102126852 + PB1D9 SINE Alu 3 118 -2 1 752 878 69 154 0 chr9 21949772 21949902 -102126270 + B1_Mur4 SINE Alu 1 150 0 1 752 733 217 61 6 chr9 21949961 21950142 -102126030 - Lx7 LINE L1 -281 7415 7225 1 752 5012 216 96 35 chr9 21950146 21950877 -102125295 - Lx7 LINE L1 -706 6990 6177 1 752 357 24 0 0 chr9 21950877 21950919 -102125253 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 752 5012 216 96 35 chr9 21950919 21951303 -102124869 - Lx7 LINE L1 -1520 6176 5789 1 752 1012 135 129 0 chr9 21951303 21951323 -102124849 - B2_Mm2 SINE B2 -3 192 164 1 752 333 0 0 0 chr9 21951323 21951360 -102124812 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 752 1012 135 129 0 chr9 21951360 21951509 -102124663 - B2_Mm2 SINE B2 -32 163 2 1 752 5012 204 31 71 chr9 21951509 21951841 -102124331 - Lx7 LINE L1 -1908 5788 5451 1 752 516 204 37 0 chr9 21951841 21951949 -102124223 - Lx7 LINE L1 -653 5227 5116 1 752 379 316 73 64 chr9 21951954 21952174 -102123998 - RMER12 LTR ERVK 0 1322 1101 1 752 5467 88 44 26 chr9 21952372 21952967 -102123205 - RLTR22_Mur LTR ERVK -976 872 270 1 752 1540 53 5 0 chr9 21952967 21953155 -102123017 + B2_Mm1a SINE B2 2 190 -3 1 752 5467 88 44 26 chr9 21953155 21953415 -102122757 - RLTR22_Mur LTR ERVK -1579 269 1 1 752 1743 177 44 34 chr9 21953437 21953846 -102122326 - Lx7 LINE L1 -809 5071 4659 1 752 3274 142 39 118 chr9 21953850 21954223 -102121949 - RLTR26 LTR ERVK -1 641 324 1 752 948 82 97 0 chr9 21954223 21954357 -102121815 - B1_Mus1 SINE Alu 0 148 2 1 752 3274 142 39 118 chr9 21954357 21954679 -102121493 - RLTR26 LTR ERVK -319 323 1 1 752 4341 162 63 66 chr9 21954672 21955701 -102120471 + RLTR13D3 LTR ERVK 1 1026 -88 1 752 955 193 17 125 chr9 21955702 21955838 -102120334 - Lx7 LINE L1 -2761 3119 2996 1 752 1145 108 6 0 chr9 21955838 21956014 -102120158 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1 752 1001 61 76 0 chr9 21956022 21956153 -102120019 - B1_Mus1 SINE Alu -7 141 1 1 752 955 152 491 81 chr9 21956153 21956478 -102119694 - Lx7 LINE L1 -2885 2995 2531 1 752 1136 236 32 36 chr9 21956482 21956813 -102119359 - RMER19A LTR ERVK 0 737 224 1 752 459 0 0 0 chr9 21956813 21956864 -102119308 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 752 1103 263 153 78 chr9 21956864 21957090 -102119082 - RMER19A LTR ERVK -295 316 2 1 752 377 250 37 0 chr9 21957094 21957230 -102118942 - Lx7 LINE L1 -4481 1399 1259 1 752 1868 252 30 63 chr9 21957230 21957751 -102118421 - RMER19C LTR ERVK -129 773 1 1 752 230 371 10 0 chr9 21957946 21958043 -102118129 + RLTR33 LTR ERVK 501 598 -80 1 752 643 269 12 49 chr9 21958204 21958368 -102117804 + RSINE1 SINE B4 2 159 -6 1 752 667 149 74 0 chr9 21958404 21958525 -102117647 - B3 SINE B2 -12 204 75 1 752 1276 107 22 0 chr9 21958662 21958840 -102117332 + B2_Mm2 SINE B2 1 182 -13 1 752 250 81 0 26 chr9 21958871 21958909 -102117263 + B2_Mm2 SINE B2 47 83 -112 1 752 34 0 0 0 chr9 21958913 21958947 -102117225 + AT_rich Low_complexity Low_complexity 1 34 0 1 752 1237 284 44 6 chr9 21959115 21959430 -102116742 + MTD LTR MaLR 3 329 -90 1 752 437 151 0 113 chr9 21959454 21959522 -102116650 + B2_Mm2 SINE B2 108 169 -26 1 752 234 0 0 0 chr9 21959522 21959548 -102116624 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 752 1078 72 7 0 chr9 21959548 21959687 -102116485 - B1_Mus1 SINE Alu -7 141 2 1 752 437 151 0 113 chr9 21959687 21959714 -102116458 + B2_Mm2 SINE B2 170 192 -3 1 752 1153 174 64 26 chr9 21959718 21959984 -102116188 + RLTR28 LTR ERVL 249 524 0 1 752 25 0 0 0 chr9 21960045 21960070 -102116102 + AT_rich Low_complexity Low_complexity 1 25 0 1 752 702 170 9 0 chr9 21960391 21960503 -102115669 - B1_Mur1 SINE Alu -20 129 17 1 752 235 370 59 20 chr9 21960413 21960515 -102115657 - B4A SINE B4 -97 195 90 1 752 577 208 135 8 chr9 21960559 21960685 -102115487 - RSINE1 SINE B4 -19 146 5 1 752 918 55 158 0 chr9 21960827 21960954 -102115218 + B1_Mus2 SINE Alu 1 147 0 1 752 312 102 0 0 chr9 21961516 21961565 -102114607 + (CTCGG)n Simple_repeat Simple_repeat 3 51 0 1 752 308 132 270 13 chr9 21961993 21962007 -102114165 + PB1D10 SINE Alu 1 36 -81 1 752 233 170 0 21 chr9 21962007 21962055 -102114117 + 4.5SRNA scRNA scRNA 33 79 -15 1 752 308 132 270 13 chr9 21962055 21962080 -102114092 + PB1D10 SINE Alu 37 108 -9 1 752 493 268 97 32 chr9 21962816 21963001 -102113171 - B3A SINE B2 0 198 2 1 752 624 282 81 0 chr9 21963012 21963186 -102112986 - ID_B1 SINE B4 -21 203 16 1 752 261 94 379 23 chr9 21963246 21963333 -102112839 + B1_Mur4 SINE Alu 1 118 -2 1 752 382 218 226 49 chr9 21963465 21963629 -102112543 + B3A SINE B2 3 195 -3 1 752 1380 81 27 0 chr9 21963675 21963860 -102112312 - B2_Mm2 SINE B2 -4 191 2 1 752 327 25 0 0 chr9 21963862 21963902 -102112270 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 1 752 831 38 0 36 chr9 21963904 21964014 -102112158 - B1_Mus1 SINE Alu -12 136 31 1 752 1125 82 7 7 chr9 21964037 21964184 -102111988 - B1_Mus2 SINE Alu 0 147 1 1 752 3842 43 26 2 chr9 21964301 21964765 -102111407 - MT2C_Mm LTR ERVL 0 475 1 1 752 218 294 0 0 chr9 21965112 21965163 -102111009 + B3A SINE B2 1 51 -147 1 752 672 231 87 62 chr9 21965163 21965371 -102110801 - B3 SINE B2 -2 214 2 1 752 1291 218 156 33 chr9 21965380 21965713 -102110459 - MTD LTR MaLR -14 405 30 1 752 1917 139 63 9 chr9 21965713 21966061 -102110111 - RLTR9A LTR ERVK -1 367 1 1 752 1291 218 156 33 chr9 21966061 21966087 -102110085 - MTD LTR MaLR -390 29 2 1 752 213 297 78 0 chr9 21966095 21966156 -102110016 + B3A SINE B2 36 101 -97 1 752 3741 68 20 2 chr9 21966156 21966643 -102109529 - LTRIS2 LTR ERV1 0 564 69 1 752 494 227 44 113 chr9 21967679 21967838 -102108334 - B1_Mur1 SINE Alu 0 149 2 1 752 291 268 0 66 chr9 21967857 21967933 -102108239 - ID SINE ID -153 71 1 1 752 573 181 51 8 chr9 21968149 21968266 -102107906 - URR1B DNA MER1_type -58 167 46 1 752 781 264 46 28 chr9 21968483 21968701 -102107471 + ID_B1 SINE B4 3 224 0 1 752 923 154 23 23 chr9 21968758 21968902 -102107270 - URR1B DNA MER1_type 0 225 82 1 752 768 161 80 0 chr9 21968902 21969039 -102107133 + B1_Mus1 SINE Alu 1 148 0 1 752 211 195 0 0 chr9 21969499 21969540 -102106632 + (CTCGG)n Simple_repeat Simple_repeat 3 43 0 1 752 227 200 0 0 chr9 21970110 21970150 -102106022 - ID2 SINE ID -2 81 42 1 752 378 0 0 0 chr9 21970171 21970213 -102105959 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 752 309 289 39 13 chr9 21970236 21970313 -102105859 - PB1D7 SINE Alu -20 100 22 1 752 285 360 36 0 chr9 21970612 21970723 -102105449 + B3 SINE B2 48 162 -54 1 752 369 0 0 0 chr9 21970813 21970854 -102105318 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1 752 1093 102 0 0 chr9 21970862 21971009 -102105163 + B1_Mus1 SINE Alu 1 147 -1 1 752 212 0 0 35 chr9 21971214 21971243 -102104929 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 1 752 874 199 53 0 chr9 21971275 21971446 -102104726 - B3 SINE B2 0 216 37 1 752 268 337 30 0 chr9 21971526 21971627 -102104545 + PB1D10 SINE Alu 1 104 -13 1 752 496 208 78 99 chr9 21971643 21971835 -102104337 - B3A SINE B2 -10 188 1 1 752 674 272 0 0 chr9 21971883 21972056 -102104116 + MurSatRep1 Unknown Unknown 572 744 -1393 1 752 812 309 7 20 chr9 21972343 21972637 -102103535 + B4A SINE B4 1 290 -2 1 752 1428 65 5 16 chr9 21972711 21972899 -102103273 + B2_Mm1a SINE B2 2 187 -6 1 752 702 236 66 36 chr9 21972936 21973103 -102103069 - B3A SINE B2 0 198 27 1 752 790 230 33 33 chr9 21973104 21973135 -102103037 + B3 SINE B2 2 33 -183 1 752 1082 45 205 0 chr9 21973135 21973291 -102102881 - B2_Mm1t SINE B2 -3 190 3 1 752 790 230 33 33 chr9 21973291 21973470 -102102702 + B3 SINE B2 34 211 -5 1 752 1196 115 11 5 chr9 21973501 21973685 -102102487 + B2_Mm1t SINE B2 1 185 -8 1 752 232 372 44 48 chr9 21974084 21974290 -102101882 + MurSatRep1 Unknown Unknown 1749 1953 -184 1 752 313 309 21 21 chr9 21974233 21974375 -102101797 + MMSAT4 Satellite Satellite 22 163 -5 1 752 814 183 8 0 chr9 21975028 21975159 -102101013 + B1_Mm SINE Alu 1 132 -15 1 752 383 245 52 21 chr9 21975159 21975255 -102100917 + B3 SINE B2 23 121 -95 1 752 489 252 37 52 chr9 21975447 21975581 -102100591 - RSINE1 SINE B4 -31 134 3 1 752 258 269 83 31 chr9 21975587 21975683 -102100489 - PB1D7 SINE Alu -6 114 14 1 752 370 340 7 7 chr9 21975700 21975851 -102100321 - RSINE1 SINE B4 -12 153 3 1 752 270 257 183 85 chr9 21975868 21976021 -102100151 - B4 SINE B4 0 292 125 1 752 675 124 133 0 chr9 21976056 21976169 -102100003 + ORR1D1 LTR MaLR 1 128 -246 1 752 563 189 19 9 chr9 21976177 21976284 -102099888 + ORR1D1 LTR MaLR 267 374 0 1 752 214 306 0 16 chr9 21976496 21976559 -102099613 - ID4 SINE ID -6 77 16 1 752 230 56 0 27 chr9 21976666 21976703 -102099469 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 1 752 671 163 114 0 chr9 21976725 21976848 -102099324 - B1_Mur2 SINE Alu -10 139 3 1 752 666 250 37 32 chr9 21976849 21977039 -102099133 - B3A SINE B2 -7 191 1 1 752 432 0 0 0 chr9 21977667 21977715 -102098457 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 752 3075 55 26 8 chr9 21977715 21978101 -102098071 + MTA_Mm LTR MaLR 4 396 0 1 752 7768 76 8 66 chr9 21978101 21979267 -102096905 + MTA_Mm-int LTR MaLR 1 1098 0 1 752 3317 33 5 25 chr9 21979267 21979671 -102096501 + MTA_Mm LTR MaLR 1 396 0 1 752 435 221 13 0 chr9 21979775 21979852 -102096320 + ID4_ SINE ID 2 79 -4 1 752 354 138 0 0 chr9 21979891 21979949 -102096223 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 752 367 248 47 9 chr9 21980011 21980117 -102096055 + MTD LTR MaLR 305 414 -5 1 752 303 214 0 0 chr9 21980260 21980330 -102095842 + CT-rich Low_complexity Low_complexity 3 72 0 1 752 556 204 29 0 chr9 21980333 21980436 -102095736 - B1_Mur2 SINE Alu -43 106 1 1 752 955 226 36 5 chr9 21980536 21980732 -102095440 + B3 SINE B2 1 202 -14 1 752 424 212 12 0 chr9 21980732 21980812 -102095360 + B1F1 SINE Alu 40 120 -29 1 752 1759 153 8 93 chr9 21980808 21981162 -102095010 + LTRIS_Mus LTR ERV1 254 577 -10 1 752 3119 107 39 39 chr9 21981176 21981663 -102094509 - RLTR1C LTR ERV1 -16 487 1 1 752 876 268 21 0 chr9 21981678 21981868 -102094304 + B3 SINE B2 22 215 -1 1 752 320 322 34 22 chr9 21981846 21981935 -102094237 + PB1D7 SINE Alu 18 107 -13 1 752 3043 18 3 0 chr9 21981935 21982271 -102093901 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 752 52333 27 23 15 chr9 21982271 21986345 -102089827 - IAPEz-int LTR ERVK 0 6481 2322 1 752 183 265 105 35 chr9 21986345 21986431 -102089741 - L3 LINE CR1 -3669 820 729 1 752 52333 27 23 15 chr9 21986431 21988695 -102087477 - IAPEz-int LTR ERVK 0 2321 8 1 752 3054 15 3 0 chr9 21988695 21989031 -102087141 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 752 972 183 161 0 chr9 21989116 21989302 -102086870 + B3 SINE B2 1 216 0 1 752 1121 96 14 0 chr9 21989316 21989462 -102086710 - B1_Mus1 SINE Alu 0 148 1 1 752 23 0 0 0 chr9 21989465 21989488 -102086684 + AT_rich Low_complexity Low_complexity 1 23 0 1 752 227 320 79 13 chr9 21989556 21989632 -102086540 - PB1D7 SINE Alu -1 119 39 1 752 275 111 0 22 chr9 21989881 21989927 -102086245 - B1_Mm SINE Alu -36 111 67 1 752 219 68 182 0 chr9 21989895 21989939 -102086233 - B1F SINE Alu -49 100 49 1 752 461 204 82 0 chr9 21990874 21990972 -102085200 - B3A SINE B2 -88 110 5 1 752 622 209 49 56 chr9 21990984 21991126 -102085046 - B1_Mur1 SINE Alu 0 149 9 1 752 1012 216 10 19 chr9 21991160 21991368 -102084804 - B3 SINE B2 -6 210 5 1 752 297 0 0 0 chr9 21991515 21991548 -102084624 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 752 282 29 0 0 chr9 21991568 21991603 -102084569 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 752 4208 61 50 36 chr9 21991736 21992315 -102083857 + LTRIS_Mus LTR ERV1 1 587 0 1 752 257 223 0 11 chr9 21992795 21992890 -102083282 + (CTCGG)n Simple_repeat Simple_repeat 4 97 0 1 752 240 35 0 0 chr9 21993298 21993327 -102082845 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 752 270 284 25 202 chr9 21993332 21993570 -102082602 - RMER21A LTR ERV1 -125 717 522 1 752 211 191 38 13 chr9 21994045 21994204 -102081968 + (CTCA)n Simple_repeat Simple_repeat 2 164 0 1 752 299 192 41 0 chr9 21994217 21994389 -102081783 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1 752 246 198 40 11 chr9 21994402 21994576 -102081596 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1 752 228 200 41 0 chr9 21994611 21994756 -102081416 + (CTCA)n Simple_repeat Simple_repeat 2 152 0 1 752 252 175 39 8 chr9 21994791 21994918 -102081254 + (CTCA)n Simple_repeat Simple_repeat 2 132 0 1 752 256 194 37 15 chr9 21994932 21995199 -102080973 + (CTCA)n Simple_repeat Simple_repeat 1 272 0 1 752 299 170 46 17 chr9 21995259 21995433 -102080739 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1 752 200 214 42 0 chr9 21995468 21995636 -102080536 + (CTCA)n Simple_repeat Simple_repeat 2 176 0 1 752 285 180 40 11 chr9 21995717 21995891 -102080281 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1 752 270 190 37 15 chr9 21995905 21996172 -102080000 + (CTCA)n Simple_repeat Simple_repeat 1 272 0 1 752 355 169 40 6 chr9 21996232 21996405 -102079767 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1 752 252 186 40 11 chr9 21996418 21996592 -102079580 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1 752 200 184 39 0 chr9 21996605 21996708 -102079464 + (CTCA)n Simple_repeat Simple_repeat 2 108 0 1 752 423 231 32 18 chr9 21996744 21997096 -102079076 + (CTCA)n Simple_repeat Simple_repeat 1 357 0 1 752 875 70 0 0 chr9 21997100 21997228 -102078944 - L1Md_A LINE L1 0 6582 6455 1 752 198 165 38 19 chr9 21997230 21997335 -102078837 + (CTCA)n Simple_repeat Simple_repeat 2 108 0 1 752 568 259 107 63 chr9 21998371 21998577 -102077595 - RMER21A LTR ERV1 -393 554 340 1 752 2537 71 12 0 chr9 21998608 21998931 -102077241 - ORR1A2 LTR MaLR 0 327 1 1 752 247 251 182 9 chr9 21998957 21999067 -102077105 - RSINE1 SINE B4 -27 138 10 1 752 274 211 28 0 chr9 21999107 21999178 -102076994 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 752 278 228 160 55 chr9 21999211 21999341 -102076831 + RMER10A LTR ERVL 37 172 -270 1 752 1194 68 0 0 chr9 21999341 21999489 -102076683 - B1_Mus1 SINE Alu 0 148 1 1 752 278 228 160 55 chr9 21999489 21999595 -102076577 + RMER10A LTR ERVL 173 298 -144 1 752 208 121 0 0 chr9 21999597 21999630 -102076542 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 1 752 267 103 0 0 chr9 22000322 22000361 -102075811 + (CCCCCT)n Simple_repeat Simple_repeat 6 44 0 1 752 474 214 147 23 chr9 22000385 22000514 -102075658 - B1_Mm SINE Alu -2 145 1 2 752 186 43 0 0 chr9 22000561 22000584 -102075588 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 3 752 2084 201 68 40 chr9 22000723 22001251 -102074921 - RLTR26 LTR ERVK -99 543 1 4 752 680 233 13 0 chr9 22001496 22001655 -102074517 + MurSatRep1 Unknown Unknown 599 759 -1378 5 752 32 43 0 0 chr9 22001963 22002009 -102074163 + AT_rich Low_complexity Low_complexity 1 46 0 6 752 2598 176 70 14 chr9 22002021 22002521 -102073651 - RLTR11A LTR ERVK 0 528 1 7 752 732 261 23 0 chr9 22002564 22002740 -102073432 + B3A SINE B2 1 180 -18 8 752 515 249 90 42 chr9 22002778 22002967 -102073205 - B3A SINE B2 0 198 1 9 752 499 264 27 102 chr9 22003009 22003195 -102072977 - B3A SINE B2 0 198 27 1 752 1036 114 7 0 chr9 22003226 22003375 -102072797 - B1_Mur4 SINE Alu 0 150 1 1 752 763 271 50 0 chr9 22003513 22003712 -102072460 - B3 SINE B2 -7 209 1 1 752 387 337 47 45 chr9 22004103 22004722 -102071450 + MurSatRep1 Unknown Unknown 1709 2137 0 1 752 475 336 25 29 chr9 22004718 22005396 -102070776 + MurSatRep1 Unknown Unknown 1738 2070 -67 1 752 1374 90 32 0 chr9 22005918 22006107 -102070065 - B2_Mm2 SINE B2 0 195 1 1 752 395 92 46 0 chr9 22006265 22006330 -102069842 - B2_Mm2 SINE B2 -9 186 119 1 752 491 279 8 30 chr9 22006584 22006717 -102069455 - RSINE1 SINE B4 -33 132 3 1 752 5933 79 7 78 chr9 22007029 22008036 -102068136 - ORR1A1-int LTR MaLR -163 935 1 1 752 1745 26 0 57 chr9 22008038 22008283 -102067889 - ORR1A1 LTR MaLR 0 346 116 1 752 2592 67 8 14 chr9 22008247 22008611 -102067561 - LTRIS3 LTR ERV1 -150 362 1 1 752 590 280 70 52 chr9 22008641 22008871 -102067301 - MTD LTR MaLR -174 245 12 2 752 385 316 43 54 chr9 22009628 22009963 -102066209 + MurSatRep1 Unknown Unknown 1747 2049 -88 2 752 569 250 100 57 chr9 22010080 22010381 -102065791 - L1M2 LINE L1 -1672 4471 4158 2 752 592 279 121 50 chr9 22010432 22010771 -102065401 - RLTR9A LTR ERVK 0 368 6 2 752 1331 78 28 6 chr9 22011224 22011405 -102064767 - B2_Mm2 SINE B2 -9 186 2 2 752 1191 305 32 37 chr9 22011405 22012021 -102064151 - RLTR6-int LTR ERV1 -159 7619 7007 2 752 432 0 0 0 chr9 22012669 22012717 -102063455 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 2 752 256 296 92 43 chr9 22012852 22012993 -102063179 - RLTR6-int LTR ERV1 -1542 6236 6089 2 752 225 0 0 0 chr9 22013401 22013426 -102062746 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 752 1239 41 0 0 chr9 22013427 22013572 -102062600 + B1_Mus2 SINE Alu 1 145 -2 2 752 297 0 0 0 chr9 22013573 22013606 -102062566 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 752 1548 208 27 27 chr9 22013624 22013960 -102062212 - ETnERV2-int LTR ERVK -1406 6000 5665 3 752 1171 81 0 0 chr9 22013960 22014120 -102062052 + B2_Mm2 SINE B2 2 161 -34 3 752 324 0 0 0 chr9 22014121 22014157 -102062015 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 752 1267 148 15 0 chr9 22014165 22014367 -102061805 - ETnERV2-int LTR ERVK -1763 5643 5439 3 752 3779 323 59 50 chr9 22014389 22016355 -102059817 - SRV_MM-int LTR ERVK -2565 3602 1626 3 752 1345 93 39 0 chr9 22016355 22016537 -102059635 + B2_Mm2 SINE B2 2 190 -5 3 752 3779 325 43 49 chr9 22016537 22017977 -102058195 - SRV_MM-int LTR ERVK -1658 1656 350 3 752 265 258 44 128 chr9 22018024 22018273 -102057899 - SRV_MM-int LTR ERVK -3083 231 4 3 752 534 288 108 65 chr9 22018275 22018628 -102057544 - RLTR9A LTR ERVK 0 368 1 3 752 226 301 12 0 chr9 22018628 22018711 -102057461 - L1M2 LINE L1 -2046 4097 4014 2 752 1505 48 5 11 chr9 22018776 22018964 -102057208 + B2_Mm2 SINE B2 2 188 -7 3 752 1202 48 0 7 chr9 22019524 22019660 -102056512 + B1_Mm SINE Alu 1 136 -11 3 752 197 33 33 0 chr9 22019660 22019690 -102056482 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 752 180 97 0 0 chr9 22019825 22019856 -102056316 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 752 304 179 154 0 chr9 22020007 22020085 -102056087 - PB1D9 SINE Alu 0 120 31 3 753 1190 28 14 7 chr9 22020264 22020410 -102055762 - B1_Mm SINE Alu 0 147 1 4 753 380 207 11 54 chr9 22020505 22020597 -102055575 + B4A SINE B4 2 89 -203 4 753 221 222 0 16 chr9 22020712 22020776 -102055396 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 753 270 0 0 0 chr9 22021461 22021491 -102054681 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 753 455 73 305 68 chr9 22021493 22021611 -102054561 - B2_Mm2 SINE B2 -3 192 47 4 753 1290 96 11 0 chr9 22021670 22021847 -102054325 - B2_Mm1t SINE B2 -14 179 1 4 753 713 268 80 19 chr9 22021954 22022167 -102054005 + B4A SINE B4 4 229 -63 4 753 261 0 0 0 chr9 22022167 22022196 -102053976 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 753 259 305 54 8 chr9 22023038 22023167 -102053005 - L1MB7 LINE L1 -118 6066 5932 4 753 299 304 0 42 chr9 22023250 22023370 -102052802 - L1MB7 LINE L1 -389 5789 5675 4 753 865 172 129 0 chr9 22023719 22023905 -102052267 + B3 SINE B2 1 210 -6 4 753 1197 300 20 10 chr9 22023964 22024365 -102051807 + RLTR6-int LTR ERV1 4978 5382 -2396 5 753 1083 56 29 22 chr9 22024514 22024786 -102051386 + (CAGAGA)n Simple_repeat Simple_repeat 1 273 0 5 753 343 260 73 37 chr9 22024953 22025089 -102051083 + RLTR6-int LTR ERV1 5384 5524 -2032 5 753 396 242 10 20 chr9 22025563 22025664 -102050508 + RLTR23 LTR ERV1 329 428 -2 5 753 323 83 0 0 chr9 22025678 22025726 -102050446 + B1_Mus2 SINE Alu 100 147 0 5 753 719 130 0 8 chr9 22025726 22025850 -102050322 + (GAAA)n Simple_repeat Simple_repeat 4 126 0 5 753 254 281 67 62 chr9 22026372 22026581 -102049591 + RLTR25B LTR ERVK 819 1028 0 5 753 416 150 0 12 chr9 22026791 22026872 -102049300 + GA-rich Low_complexity Low_complexity 3 82 0 5 753 1681 31 0 0 chr9 22027023 22027215 -102048957 - B2_Mm1t SINE B2 0 193 2 5 753 456 202 119 0 chr9 22027223 22027332 -102048840 - B1_Mur2 SINE Alu -3 146 25 5 753 360 240 90 67 chr9 22027682 22027816 -102048356 + B1F SINE Alu 12 148 -1 5 753 1316 100 11 5 chr9 22029072 22029263 -102046909 + B2_Mm1t SINE B2 2 193 0 6 753 185 35 69 0 chr9 22029263 22029292 -102046880 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 6 753 1121 82 0 13 chr9 22029301 22029450 -102046722 + B1_Mus2 SINE Alu 1 147 0 6 753 236 293 124 37 chr9 22029531 22029829 -102046343 - RLTR47_MM LTR ERV1 -102 430 107 6 753 180 167 0 0 chr9 22029910 22029958 -102046214 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 753 1307 76 0 5 chr9 22030970 22031156 -102045016 - B2_Mm2 SINE B2 0 195 11 6 753 667 270 133 59 chr9 22031156 22031677 -102044495 - RLTR1 LTR ERV1 0 624 30 6 753 1446 136 171 34 chr9 22031812 22032243 -102043929 + RLTR6_Mm LTR ERV1 37 587 -67 6 753 4763 114 33 55 chr9 22032247 22033073 -102043099 - MMVL30-int LTR ERV1 -17 3681 2874 6 753 1004 38 119 13 chr9 22033085 22033244 -102042928 + LTRIS2 LTR ERV1 389 564 0 6 753 1408 48 48 0 chr9 22033265 22033451 -102042721 - B2_Mm2 SINE B2 0 195 1 7 753 560 248 40 0 chr9 22033460 22033585 -102042587 - B1_Mur1 SINE Alu -5 144 15 7 753 2277 121 100 56 chr9 22033704 22034202 -102041970 - RLTR47_MM LTR ERV1 0 532 13 7 753 925 123 85 18 chr9 22034954 22035119 -102041053 - B2_Mm2 SINE B2 -19 176 1 7 753 489 182 220 28 chr9 22035155 22035296 -102040876 - B2_Mm2 SINE B2 -26 169 2 7 753 216 86 0 0 chr9 22035449 22035484 -102040688 + (T)n Simple_repeat Simple_repeat 1 35 0 7 753 992 276 54 3 chr9 22035887 22036200 -102039972 - Lx8 LINE L1 -301 7172 6844 7 753 338 329 169 41 chr9 22036284 22036579 -102039593 - L1M3de LINE L1 -6166 487 155 7 753 663 241 52 24 chr9 22036915 22037127 -102039045 - RCHARR1 DNA MER1_type 0 974 757 7 753 522 269 86 63 chr9 22037156 22037378 -102038794 - RCHARR1 DNA MER1_type -545 429 203 7 753 659 39 0 0 chr9 22037505 22037583 -102038589 + MERVL-int LTR ERVL 5408 5485 0 7 753 4404 10 10 12 chr9 22037583 22038077 -102038095 + MT2_Mm LTR ERVL 1 493 0 7 753 380 318 82 6 chr9 22038428 22038599 -102037573 - RCHARR1 DNA MER1_type -770 204 21 7 753 2302 153 66 0 chr9 22038601 22038993 -102037179 + MTC LTR MaLR 1 418 -3 8 753 405 0 0 0 chr9 22039353 22039398 -102036774 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 753 374 236 36 36 chr9 22039469 22039579 -102036593 + MurSatRep1 Unknown Unknown 619 728 -1409 8 753 405 309 49 54 chr9 22039662 22039806 -102036366 - B3A SINE B2 -2 196 51 8 753 2423 122 19 94 chr9 22039806 22040153 -102036019 + ORR1B1 LTR MaLR 1 348 -46 8 753 1154 55 7 7 chr9 22040153 22040299 -102035873 + B1_Mm SINE Alu 2 147 0 8 753 2423 122 19 94 chr9 22040299 22040377 -102035795 + ORR1B1 LTR MaLR 349 394 0 8 753 405 309 49 54 chr9 22040377 22040417 -102035755 - B3A SINE B2 -148 50 13 8 753 375 265 84 17 chr9 22040935 22041054 -102035118 + RSINE1 SINE B4 36 162 -3 8 753 426 69 0 0 chr9 22041054 22041112 -102035060 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 8 753 387 337 65 23 chr9 22041246 22041556 -102034616 + L1M2 LINE L1 2226 2548 -4301 8 753 1115 229 184 0 chr9 22041675 22042029 -102034143 - MTD LTR MaLR 0 419 1 8 753 1422 83 5 0 chr9 22042717 22042909 -102033263 + B2_Mm2 SINE B2 1 193 -2 9 753 235 359 0 0 chr9 22043426 22043557 -102032615 + MMSAT4 Satellite Satellite 31 161 -7 9 753 4357 175 72 69 chr9 22043702 22044074 -102032098 + MurERV4_19-int LTR ERVK 4588 4973 -807 9 753 3913 143 50 12 chr9 22044074 22044741 -102031431 - RLTR17 LTR ERVK 0 692 1 9 753 4357 175 72 69 chr9 22044741 22045093 -102031079 + MurERV4_19-int LTR ERVK 4974 5299 -481 9 753 1198 61 0 0 chr9 22045093 22045240 -102030932 + B1_Mus2 SINE Alu 1 147 0 9 753 4357 175 72 69 chr9 22045240 22045256 -102030916 + MurERV4_19-int LTR ERVK 5300 5319 -461 9 753 234 0 0 0 chr9 22045256 22045282 -102030890 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 753 4357 175 72 69 chr9 22045282 22045646 -102030526 + MurERV4_19-int LTR ERVK 5320 5704 -76 9 753 1139 115 16 27 chr9 22045646 22045833 -102030339 - B2_Mm2 SINE B2 -9 186 2 9 753 4357 175 72 69 chr9 22045833 22045910 -102030262 + MurERV4_19-int LTR ERVK 5705 5775 -5 9 753 526 179 72 29 chr9 22045922 22046060 -102030112 + RMER19C LTR ERVK 1 144 -467 9 753 210 357 8 43 chr9 22046789 22046906 -102029266 + B4A SINE B4 8 120 -172 9 753 1277 122 11 0 chr9 22047001 22047181 -102028991 + B2_Mm1t SINE B2 1 182 -11 9 753 337 69 379 21 chr9 22047229 22047324 -102028848 + B2_Mm2 SINE B2 47 175 -20 9 753 831 201 223 35 chr9 22047532 22047842 -102028330 + ORR1D1 LTR MaLR 3 370 -4 1 753 276 292 174 0 chr9 22047851 22048012 -102028160 + MER31A LTR ERV1 173 361 -124 1 753 1086 69 7 40 chr9 22048096 22048247 -102027925 - B1_Mus2 SINE Alu 0 147 2 1 753 1112 171 33 5 chr9 22048351 22048562 -102027610 + RLTR25A LTR ERVK 29 245 -858 1 753 815 228 150 0 chr9 22048920 22049153 -102027019 - Lx7 LINE L1 -1815 5881 5614 1 753 486 212 102 0 chr9 22049248 22049366 -102026806 - B1_Mur2 SINE Alu -5 144 15 1 753 21 36 0 0 chr9 22049389 22049417 -102026755 + AT_rich Low_complexity Low_complexity 1 28 0 1 753 705 229 61 41 chr9 22049421 22049617 -102026555 - B3A SINE B2 -16 200 1 1 753 341 301 117 25 chr9 22049621 22049904 -102026268 - Lx7 LINE L1 -608 5272 4964 1 753 1204 68 0 0 chr9 22049955 22050102 -102026070 + B1_Mus2 SINE Alu 1 147 0 1 753 207 0 0 0 chr9 22050130 22050153 -102026019 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 753 354 23 0 0 chr9 22050769 22050812 -102025360 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 753 702 219 14 0 chr9 22050853 22050999 -102025173 + B1F2 SINE Alu 2 149 0 1 753 180 111 0 0 chr9 22050999 22051026 -102025146 + (A)n Simple_repeat Simple_repeat 1 27 0 1 753 399 225 0 0 chr9 22051290 22051370 -102024802 - B3 SINE B2 -136 80 1 1 753 756 276 89 38 chr9 22051494 22051810 -102024362 - ORR1D2 LTR MaLR -35 335 4 1 753 189 74 0 0 chr9 22051876 22051903 -102024269 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 753 877 245 25 5 chr9 22051903 22052100 -102024072 - B3 SINE B2 -7 209 9 1 753 378 204 140 0 chr9 22052101 22052194 -102023978 - ID_B1 SINE B4 0 224 119 1 753 3209 139 35 42 chr9 22052263 22052864 -102023308 - ORR1D2-int LTR MaLR 0 1509 913 1 753 2827 110 215 51 chr9 22052935 22053578 -102022594 - RLTR25B LTR ERVK 0 1028 281 1 753 272 336 7 7 chr9 22053850 22054072 -102022100 - MMSAT4 Satellite Satellite 0 222 1 1 753 416 279 31 31 chr9 22054102 22054576 -102021596 - MMSAT4 Satellite Satellite 0 474 1 1 753 352 140 97 0 chr9 22055371 22055464 -102020708 + Lx5 LINE L1 6946 7047 -3 1 753 632 275 107 11 chr9 22055620 22055881 -102020291 - B4A SINE B4 -2 290 5 1 753 887 86 38 119 chr9 22056499 22056684 -102019488 + ORR1B2 LTR MaLR 196 365 -2 1 753 231 171 0 0 chr9 22056767 22056808 -102019364 - B1_Mur1 SINE Alu -40 109 69 1 753 1411 63 0 30 chr9 22057326 22057523 -102018649 - B2_Mm2 SINE B2 -2 193 3 1 753 890 90 29 22 chr9 22057525 22057661 -102018511 - B1_Mus1 SINE Alu -2 146 10 1 753 1932 136 41 18 chr9 22057683 22058021 -102018151 - ORR1B1 LTR MaLR -8 386 41 1 753 434 264 24 16 chr9 22058712 22058839 -102017333 + L1_Mur2 LINE L1 514 641 -6445 1 753 2384 99 109 0 chr9 22058834 22059452 -102016720 + L1_Mur2 LINE L1 891 1607 -4270 1 753 7363 153 55 20 chr9 22059448 22061219 -102014953 + Lx5 LINE L1 5142 6994 -56 1 753 228 347 65 53 chr9 22062049 22062390 -102013782 + L1MA5 LINE L1 5950 6294 -6 1 753 314 205 49 49 chr9 22062506 22062588 -102013584 - MurSatRep1 Unknown Unknown -1416 721 640 1 753 1166 61 0 0 chr9 22063201 22063348 -102012824 + B1_Mus2 SINE Alu 1 147 0 1 753 340 238 41 40 chr9 22063365 22063501 -102012671 + L1M2 LINE L1 5530 5666 -646 1 753 627 233 0 8 chr9 22063595 22063729 -102012443 + B1_Mur1 SINE Alu 17 149 0 1 753 530 189 69 30 chr9 22064631 22064762 -102011410 - B1_Mur2 SINE Alu 0 149 14 1 753 1175 160 58 6 chr9 22064780 22065192 -102010980 - RLTR24 LTR ERV1 -20 509 6 1 753 672 64 0 0 chr9 22065447 22065541 -102010631 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 753 1116 75 0 13 chr9 22065648 22065786 -102010386 + B1_Mus2 SINE Alu 1 138 -9 1 753 294 50 0 0 chr9 22065786 22065826 -102010346 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 753 3563 147 121 100 chr9 22067039 22067476 -102008696 + RMER21A LTR ERV1 1 393 -554 1 753 468 0 0 0 chr9 22067476 22067528 -102008644 + (CATAA)n Simple_repeat Simple_repeat 4 55 0 1 753 3563 147 121 100 chr9 22067528 22068018 -102008154 + RMER21A LTR ERV1 394 946 -1 1 753 272 302 10 10 chr9 22068018 22068089 -102008083 + RMER21A LTR ERV1 764 834 -8 1 753 1143 203 0 24 chr9 22068095 22068307 -102007865 + RodERV21-int LTR ERV1 3 209 -4782 1 753 828 259 61 0 chr9 22068465 22068677 -102007495 + RLTR42-int LTR ERVK 1111 1335 -4187 1 753 4820 50 5 2 chr9 22068820 22069405 -102006767 - LTRIS_Mus LTR ERV1 0 587 1 1 753 5248 196 54 26 chr9 22069738 22070793 -102005379 + RodERV21-int LTR ERV1 1537 2621 -2370 1 753 2992 138 217 33 chr9 22070794 22071365 -102004807 + RLTR25A LTR ERVK 1 684 -419 1 753 1167 68 0 0 chr9 22071365 22071511 -102004661 + B1_Mus2 SINE Alu 2 147 0 1 753 2992 138 217 33 chr9 22071511 22071563 -102004609 + RLTR25A LTR ERVK 685 739 -364 1 753 1557 58 5 0 chr9 22071563 22071754 -102004418 + B2_Mm1t SINE B2 1 192 -1 1 753 2992 138 217 33 chr9 22071754 22071861 -102004311 + RLTR25A LTR ERVK 740 867 -236 1 753 4092 145 58 26 chr9 22072046 22072867 -102003305 - RMER13B LTR ERVK 0 908 1 1 753 365 156 39 0 chr9 22073279 22073356 -102002816 - RLTR23 LTR ERV1 -2 428 349 1 753 1474 187 22 18 chr9 22075076 22075348 -102000824 + RodERV21-int LTR ERV1 3502 3774 -1217 1 753 674 133 156 1 chr9 22075372 22075501 -102000671 + Lx7 LINE L1 7266 7413 -283 1 753 1458 44 50 0 chr9 22075501 22075683 -102000489 - B2_Mm1a SINE B2 -2 191 1 1 753 296 199 112 131 chr9 22075683 22075829 -102000343 + Lx7 LINE L1 7544 7691 -5 1 753 1173 75 0 0 chr9 22076162 22076309 -101999863 + B1_Mus2 SINE Alu 1 147 0 1 753 234 0 0 0 chr9 22076309 22076335 -101999837 + (A)n Simple_repeat Simple_repeat 1 26 0 1 753 1107 95 0 0 chr9 22076584 22076731 -101999441 - B1_Mus2 SINE Alu 0 147 1 1 753 297 375 0 0 chr9 22076845 22076949 -101999223 - PB1D10 SINE Alu -3 114 11 1 753 1205 48 7 0 chr9 22077182 22077328 -101998844 - B1_Mus1 SINE Alu 0 148 2 1 753 1037 253 127 12 chr9 22077736 22078068 -101998104 + ORR1D2 LTR MaLR 1 370 0 1 753 363 136 0 0 chr9 22078134 22078193 -101997979 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 753 801 239 63 72 chr9 22078929 22079262 -101996910 + Lx7 LINE L1 7361 7690 -6 1 753 3179 51 13 5 chr9 22079444 22079837 -101996335 + MTA_Mm LTR MaLR 1 396 0 1 753 1363 100 16 0 chr9 22079872 22080062 -101996110 - B2_Mm2 SINE B2 -1 194 2 1 753 33 43 0 0 chr9 22080093 22080140 -101996032 + AT_rich Low_complexity Low_complexity 1 47 0 1 753 677 215 7 29 chr9 22080143 22080282 -101995890 - B1_Mus1 SINE Alu -9 139 4 1 753 360 0 0 0 chr9 22080629 22080669 -101995503 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 1 753 1477 70 5 0 chr9 22080863 22081050 -101995122 + B2_Mm1a SINE B2 1 188 -5 1 753 239 328 45 8 chr9 22081367 22081499 -101994673 + B1F SINE Alu 7 143 -6 1 753 424 281 30 0 chr9 22082014 22082149 -101994023 - B1_Mur1 SINE Alu -5 144 6 1 753 360 269 32 32 chr9 22082660 22083457 -101992715 - MMSAT4 Satellite Satellite -13 797 1 1 753 1177 50 0 0 chr9 22085467 22085608 -101990564 + B1_Mus1 SINE Alu 2 142 -6 1 753 237 65 0 0 chr9 22085610 22085641 -101990531 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 753 567 208 0 0 chr9 22085642 22085767 -101990405 + A-rich Low_complexity Low_complexity 3 127 0 1 753 1675 176 77 11 chr9 22085922 22086284 -101989888 + ORR1B1 LTR MaLR 1 386 -8 1 753 566 286 0 21 chr9 22086460 22086603 -101989569 + B1_Mur1 SINE Alu 3 142 -7 1 753 707 158 0 0 chr9 22086748 22086868 -101989304 - B2_Mm2 SINE B2 -73 122 3 1 753 183 146 0 0 chr9 22087784 22087825 -101988347 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 753 342 252 32 32 chr9 22088471 22088594 -101987578 - MurSatRep1 Unknown Unknown -1409 728 606 1 753 484 286 67 22 chr9 22089028 22089207 -101986965 + RCHARR1 DNA MER1_type 11 197 -777 1 753 271 248 255 0 chr9 22089257 22089410 -101986762 + RCHARR1 DNA MER1_type 272 463 -511 1 753 658 197 66 66 chr9 22089417 22089505 -101986667 + RCHARR1 DNA MER1_type 754 844 -130 1 753 1064 125 60 38 chr9 22089505 22089688 -101986484 - B2_Mm2 SINE B2 -7 188 2 1 753 658 197 66 66 chr9 22089688 22089811 -101986361 + RCHARR1 DNA MER1_type 845 965 -9 1 753 1899 162 96 18 chr9 22090257 22090641 -101985531 - MTC LTR MaLR -6 415 2 1 753 367 366 11 6 chr9 22090795 22090971 -101985201 + L1M3de LINE L1 614 790 -5863 1 753 500 272 22 22 chr9 22091016 22091155 -101985017 - L1_Rod LINE L1 -897 4950 4812 1 753 579 235 193 36 chr9 22091156 22091250 -101984922 - L1_Rod LINE L1 -1397 4483 4385 1 753 636 129 0 0 chr9 22091250 22091351 -101984821 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 753 579 232 430 16 chr9 22091351 22091721 -101984451 - L1_Rod LINE L1 -1463 4384 3854 1 753 693 90 0 0 chr9 22091758 22091869 -101984303 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 753 372 171 56 0 chr9 22091901 22091998 -101984174 - ORR1D2 LTR MaLR -250 109 1 1 753 216 0 0 0 chr9 22092039 22092063 -101984109 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 753 1119 68 13 13 chr9 22092069 22092218 -101983954 - B1_Mur4 SINE Alu 0 150 2 1 753 1220 190 108 13 chr9 22092225 22092604 -101983568 - L1_Rod LINE L1 -2363 3484 3070 1 753 1273 130 16 0 chr9 22092610 22092802 -101983370 - B2_Mm2 SINE B2 0 195 1 1 753 617 69 0 11 chr9 22092808 22092896 -101983276 + (TTCC)n Simple_repeat Simple_repeat 3 89 0 1 753 1159 154 11 0 chr9 22092896 22093071 -101983101 - B2_Mm1t SINE B2 -15 178 2 1 753 1124 262 59 108 chr9 22093166 22093519 -101982653 + MTD-int LTR MaLR 791 1143 -115 1 753 1427 81 5 0 chr9 22093519 22093705 -101982467 + B2_Mm2 SINE B2 1 187 -8 1 753 1124 262 59 108 chr9 22093705 22093762 -101982410 + MTD-int LTR MaLR 1144 1192 -66 1 753 1181 95 0 0 chr9 22093762 22093910 -101982262 + B1_Mus1 SINE Alu 1 148 0 1 753 1124 262 59 108 chr9 22093910 22093990 -101982182 + MTD-int LTR MaLR 1193 1258 0 1 753 1656 221 54 5 chr9 22093995 22094382 -101981790 + MTD LTR MaLR 6 411 -8 1 753 309 257 217 28 chr9 22094654 22094866 -101981306 - Lx8 LINE L1 0 7473 7222 1 753 25 31 0 0 chr9 22096242 22096274 -101979898 + AT_rich Low_complexity Low_complexity 1 32 0 1 753 579 193 18 0 chr9 22096535 22096644 -101979528 - PB1D9 SINE Alu -5 115 5 1 753 667 370 39 3 chr9 22096822 22097104 -101979068 - B4A SINE B4 0 292 1 1 753 363 305 70 58 chr9 22097296 22097609 -101978563 + L1MB7 LINE L1 5744 6060 -124 1 753 383 36 7 0 chr9 22097753 22097814 -101978358 - B1_Mur4 SINE Alu 0 150 57 1 753 576 56 0 0 chr9 22098161 22098232 -101977940 - Lx3_Mus LINE L1 -627 6382 6312 1 753 377 221 178 19 chr9 22098407 22098564 -101977608 - L1_Rod LINE L1 -2234 3613 3432 1 753 1638 254 157 30 chr9 22098597 22099372 -101976800 - L1_Rod LINE L1 -3197 2650 1777 1 753 361 307 13 39 chr9 22099410 22099566 -101976606 + B3 SINE B2 11 162 -54 1 753 180 0 0 0 chr9 22099568 22099588 -101976584 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 2 753 1066 126 54 16 chr9 22100053 22100239 -101975933 - B2_Mm2 SINE B2 -1 194 2 2 753 253 189 176 67 chr9 22100744 22100863 -101975309 - MMSAT4 Satellite Satellite -6 162 31 2 753 324 164 0 0 chr9 22101137 22101198 -101974974 - B1_Mus1 SINE Alu -87 61 1 2 753 1247 142 32 14 chr9 22102420 22102641 -101973531 - URR1B DNA MER1_type 0 225 1 2 753 542 158 9 0 chr9 22103286 22103301 -101972871 + polypurine Low_complexity Low_complexity 2 16 0 2 753 1198 48 14 0 chr9 22103301 22103446 -101972726 + B1_Mm SINE Alu 1 147 0 2 753 542 158 9 0 chr9 22103446 22103544 -101972628 + GA-rich Low_complexity Low_complexity 17 115 0 2 753 479 286 14 0 chr9 22103547 22103694 -101972478 + B1_Mur1 SINE Alu 1 149 0 2 753 515 236 35 21 chr9 22105100 22105243 -101970929 + B1F SINE Alu 5 149 0 2 753 569 264 36 0 chr9 22105377 22105517 -101970655 + RSINE1 SINE B4 2 146 -19 2 753 336 82 0 0 chr9 22105577 22105626 -101970546 + B2_Mm2 SINE B2 2 50 -145 2 753 1126 100 31 72 chr9 22106081 22106275 -101969897 + B2_Mm2 SINE B2 2 187 -8 2 753 959 155 0 0 chr9 22106284 22106432 -101969740 + B1_Mus1 SINE Alu 1 148 0 2 753 633 66 0 0 chr9 22106444 22106535 -101969637 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 753 198 0 0 0 chr9 22106612 22106634 -101969538 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 753 791 66 0 0 chr9 22106638 22106744 -101969428 - B1_Mm SINE Alu -11 136 31 2 753 1686 132 31 89 chr9 22106750 22107034 -101969138 + ORR1B2 LTR MaLR 39 302 -65 2 753 1284 20 7 0 chr9 22107034 22107181 -101968991 - B1_Mus1 SINE Alu 0 148 1 2 753 1686 132 31 89 chr9 22107181 22107245 -101968927 + ORR1B2 LTR MaLR 303 367 0 2 753 648 239 0 0 chr9 22107253 22107391 -101968781 + ID_B1 SINE B4 83 220 -4 2 753 378 307 70 24 chr9 22107402 22107689 -101968483 + L1M2 LINE L1 3789 4088 -2055 2 753 283 248 266 0 chr9 22107841 22107950 -101968222 + RSINE1 SINE B4 20 157 -8 2 753 487 272 54 0 chr9 22108092 22108239 -101967933 + ID_B1 SINE B4 2 156 -68 2 753 947 256 90 10 chr9 22108240 22108528 -101967644 + Lx5 LINE L1 6723 7033 -17 2 753 373 243 0 0 chr9 22108532 22108606 -101967566 + ID_B1 SINE B4 145 218 -6 2 753 224 344 11 0 chr9 22108889 22108982 -101967190 + B1_Mur4 SINE Alu 46 139 -11 2 753 234 0 0 0 chr9 22108984 22109010 -101967162 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 753 525 244 110 0 chr9 22109229 22109356 -101966816 + B1_Mur1 SINE Alu 2 142 -7 2 753 315 0 0 0 chr9 22110071 22110106 -101966066 + (T)n Simple_repeat Simple_repeat 1 35 0 2 753 1261 34 0 0 chr9 22110106 22110253 -101965919 - B1_Mus2 SINE Alu 0 147 1 2 753 273 339 0 22 chr9 22110577 22110758 -101965414 + CT-rich Low_complexity Low_complexity 3 179 0 2 753 1250 34 0 0 chr9 22112501 22112647 -101963525 + B1_Mus1 SINE Alu 2 147 -1 2 753 1421 6 0 0 chr9 22112676 22112846 -101963326 + B2_Mm1a SINE B2 2 171 -22 2 753 249 57 0 0 chr9 22112853 22112888 -101963284 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 753 913 141 28 0 chr9 22112950 22113092 -101963080 + B1_Mus1 SINE Alu 2 147 -1 2 753 2266 147 96 9 chr9 22114127 22114573 -101961599 + LTRIS4 LTR ERV1 23 507 0 2 753 1208 43 0 0 chr9 22114699 22114840 -101961332 + B1_Mus2 SINE Alu 1 141 -6 2 753 252 0 0 0 chr9 22114841 22114869 -101961303 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 753 671 248 53 24 chr9 22115597 22115804 -101960368 + B3 SINE B2 4 216 0 2 753 1894 212 48 146 chr9 22115889 22115958 -101960214 - RMER19C LTR ERVK -4 607 528 2 753 2811 144 30 30 chr9 22115958 22116465 -101959707 - LTRIS4 LTR ERV1 0 507 1 2 753 1894 212 48 146 chr9 22116465 22117067 -101959105 - RMER19C LTR ERVK -84 527 2 2 753 1649 146 119 21 chr9 22117085 22117420 -101958752 + RLTR9A LTR ERVK 1 368 0 2 753 487 186 26 29 chr9 22117635 22117758 -101958414 - RLTR13D3 LTR ERVK -13 1101 876 2 753 301 337 39 20 chr9 22118164 22118367 -101957805 - RLTR3_Mm LTR ERVK -521 807 601 2 753 318 216 24 119 chr9 22118686 22118812 -101957360 - RLTR13D3 LTR ERVK -1000 114 1 2 753 414 39 0 0 chr9 22118958 22119010 -101957162 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 753 378 338 82 50 chr9 22119445 22119787 -101956385 - Lx8 LINE L1 -1289 6184 5832 2 753 1198 41 0 26 chr9 22119794 22119945 -101956227 + B1_Mus2 SINE Alu 1 147 0 2 753 204 40 0 0 chr9 22119945 22119970 -101956202 + (A)n Simple_repeat Simple_repeat 1 25 0 2 753 26 50 0 0 chr9 22120000 22120040 -101956132 + AT_rich Low_complexity Low_complexity 1 40 0 2 753 482 229 44 108 chr9 22120092 22120143 -101956029 - L1_Mur3 LINE L1 -2744 3399 3349 2 753 1120 86 15 107 chr9 22120143 22120339 -101955833 - B2_Mm1t SINE B2 -14 179 2 2 753 781 228 46 55 chr9 22120339 22120466 -101955706 - L1_Mur3 LINE L1 -2795 3348 3209 2 753 2292 107 66 23 chr9 22120466 22120858 -101955314 - RLTR9E LTR ERVK 0 409 1 2 753 781 228 47 53 chr9 22120858 22121035 -101955137 - L1_Mur3 LINE L1 -2672 3208 3033 2 753 2123 97 33 10 chr9 22121050 22121351 -101954821 - L1Md_F2 LINE L1 -19 6563 6256 2 753 1232 48 0 0 chr9 22121352 22121499 -101954673 - B1_Mus2 SINE Alu 0 147 1 2 753 3383 125 115 7 chr9 22121499 22122039 -101954133 - Lx4B LINE L1 -1 7057 6460 2 753 569 228 63 26 chr9 22122040 22122229 -101953943 - RLTR41 LTR ERV1 0 446 251 2 753 423 0 0 0 chr9 22122367 22122414 -101953758 + (AGGTG)n Simple_repeat Simple_repeat 2 48 0 2 753 4265 149 133 65 chr9 22122609 22123220 -101952952 - Lx4B LINE L1 -596 6462 5784 2 753 1080 122 0 0 chr9 22123220 22123368 -101952804 - B1_Mus1 SINE Alu 0 148 1 2 753 5559 88 23 6 chr9 22123368 22124159 -101952013 - L1_Mur2 LINE L1 -86 5791 4988 2 753 1015 259 27 52 chr9 22124162 22124391 -101951781 - L1_Mur3 LINE L1 -2840 3040 2813 2 753 1712 26 0 0 chr9 22124391 22124583 -101951589 - B2_Mm1a SINE B2 0 193 2 2 753 1015 259 27 52 chr9 22124583 22124719 -101951453 - L1_Mur3 LINE L1 -3068 2812 2684 2 753 640 232 11 34 chr9 22125921 22126008 -101950164 - L1_Rod LINE L1 -3174 2673 2590 2 753 600 14 0 0 chr9 22126017 22126086 -101950086 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 2 753 971 60 88 22 chr9 22126086 22126213 -101949959 - B1_Mus1 SINE Alu -8 140 2 2 753 640 242 10 33 chr9 22126213 22126327 -101949845 - L1_Rod LINE L1 -3258 2589 2456 2 753 258 261 87 0 chr9 22126329 22126398 -101949774 + B1_Mur2 SINE Alu 52 126 -23 2 753 1174 164 33 0 chr9 22126345 22126589 -101949583 + ORR1A4-int LTR MaLR 795 1046 -917 2 753 449 138 82 41 chr9 22126590 22126688 -101949484 + ORR1A4 LTR MaLR 12 113 -214 2 753 1508 111 4 0 chr9 22127149 22127374 -101948798 + ORR1A4 LTR MaLR 102 327 0 2 753 4140 150 44 85 chr9 22127374 22128335 -101947837 + ORR1A4-int LTR MaLR 1043 1963 0 2 753 1536 163 11 117 chr9 22128335 22128703 -101947469 + ORR1A4 LTR MaLR 1 329 0 2 753 238 85 41 41 chr9 22128703 22128752 -101947420 - Lx9 LINE L1 -689 6955 6907 2 753 414 234 0 0 chr9 22128743 22128820 -101947352 + L1_Rod LINE L1 3907 3983 -1864 2 753 1690 206 22 0 chr9 22128837 22129153 -101947019 + Lx9 LINE L1 6581 6903 -741 2 753 662 220 0 51 chr9 22129271 22129429 -101946743 - B1_Mur4 SINE Alu 0 150 1 2 753 299 129 259 0 chr9 22129466 22129551 -101946621 + RLTR30 LTR ERV1 273 379 0 2 753 458 263 42 0 chr9 22129551 22129669 -101946503 - RSINE1 SINE B4 -28 137 15 2 753 1210 58 127 12 chr9 22129911 22130084 -101946088 + B2_Mm2 SINE B2 2 194 -1 2 753 603 194 48 0 chr9 22130109 22130233 -101945939 - B3A SINE B2 -68 130 1 2 753 1630 153 42 82 chr9 22130999 22131426 -101944746 + RMER17C LTR ERVK 1 410 0 2 753 1251 179 199 66 chr9 22131426 22131893 -101944279 + RMER17C-int LTR ERVK 1 529 -2709 2 753 3299 48 5 0 chr9 22133053 22133447 -101942725 - MTA_Mm LTR MaLR 0 396 1 2 753 2309 134 187 12 chr9 22133463 22133983 -101942189 + RMER17C-int LTR ERVK 2625 3235 -3 2 753 1257 148 31 35 chr9 22133995 22134282 -101941890 + RMER17C LTR ERVK 125 410 0 2 753 781 73 24 0 chr9 22135090 22135213 -101940959 - L1Md_F2 LINE L1 0 6582 6457 2 753 231 36 0 0 chr9 22135820 22135848 -101940324 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 753 1262 184 168 3 chr9 22138010 22138343 -101937829 + MTD LTR MaLR 1 388 -31 2 753 538 249 101 41 chr9 22139225 22139498 -101936674 + L1MA9 LINE L1 5582 5871 -441 2 753 988 226 138 38 chr9 22139504 22139845 -101936327 + Lx9 LINE L1 5589 5963 -1681 2 753 382 282 9 35 chr9 22140035 22140149 -101936023 + PB1D10 SINE Alu 2 112 -5 2 753 1286 154 171 30 chr9 22140182 22140431 -101935741 - ORR1D1 LTR MaLR 0 374 93 2 753 2179 132 131 8 chr9 22140431 22140806 -101935366 - MTC LTR MaLR 0 421 1 2 753 1286 154 171 30 chr9 22140806 22140884 -101935288 - ORR1D1 LTR MaLR -282 92 1 2 753 242 245 3 15 chr9 22141412 22141488 -101934684 + L1M5 LINE L1 5775 5851 -311 2 753 27 0 0 0 chr9 22141721 22141748 -101934424 + AT_rich Low_complexity Low_complexity 1 27 0 2 753 1026 177 86 0 chr9 22141748 22141946 -101934226 + B3 SINE B2 2 216 0 2 753 531 0 0 0 chr9 22142516 22142575 -101933597 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 753 526 177 58 65 chr9 22142575 22142714 -101933458 - B1_Mur4 SINE Alu -12 138 1 2 753 1245 27 14 0 chr9 22142762 22142908 -101933264 - B1_Mus1 SINE Alu 0 148 1 2 753 317 220 231 25 chr9 22143020 22143141 -101933031 + B1_Mur2 SINE Alu 1 146 -3 2 753 228 294 39 0 chr9 22143861 22143963 -101932209 + L1M4 LINE L1 4723 4828 -1318 2 753 335 319 35 0 chr9 22144085 22144198 -101931974 + L1M4 LINE L1 4841 4957 -1189 2 753 1227 209 166 15 chr9 22144227 22144552 -101931620 - MTD LTR MaLR -45 374 1 2 753 434 284 73 15 chr9 22144552 22144756 -101931416 + L1M4 LINE L1 4952 5167 -979 2 753 306 196 0 0 chr9 22144789 22144840 -101931332 + Lx8 LINE L1 6876 6926 -547 2 753 809 294 29 32 chr9 22144854 22145132 -101931040 + Lx8 LINE L1 6976 7252 -221 2 753 6473 8 0 0 chr9 22145145 22145851 -101930321 - L1Md_T LINE L1 0 6582 5877 2 753 334 264 11 22 chr9 22146025 22146114 -101930058 + ID_B1 SINE B4 136 223 -1 2 753 345 256 24 12 chr9 22146138 22146221 -101929951 + RSINE1 SINE B4 1 84 -81 2 753 1356 62 45 0 chr9 22146371 22146547 -101929625 + B2_Mm2 SINE B2 5 188 -7 2 753 847 60 145 0 chr9 22146550 22146667 -101929505 + B1_Mus2 SINE Alu 1 134 -13 2 753 234 91 0 0 chr9 22146667 22146700 -101929472 + (G)n Simple_repeat Simple_repeat 1 33 0 2 753 2375 20 0 0 chr9 22146850 22147152 -101929020 + MT-int LTR MaLR 725 1026 -72 2 753 394 276 104 45 chr9 22147345 22147565 -101928607 + L1M4 LINE L1 5515 5747 -433 2 753 353 291 25 25 chr9 22147749 22147869 -101928303 - PB1D9 SINE Alu 0 120 1 2 753 318 282 75 15 chr9 22147878 22148011 -101928161 + L1ME3 LINE L1 5815 5955 -207 3 753 456 312 114 13 chr9 22148686 22148913 -101927259 + Tigger5 DNA MER2_type 2156 2405 -1 3 753 581 80 0 11 chr9 22149117 22149206 -101926966 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 753 964 127 0 37 chr9 22149812 22149975 -101926197 + B2_Mm2 SINE B2 1 157 -38 3 753 204 40 0 0 chr9 22149975 22150000 -101926172 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 753 212 210 16 16 chr9 22150035 22150098 -101926074 + A-rich Low_complexity Low_complexity 2 64 0 3 753 870 222 39 5 chr9 22150101 22150309 -101925863 + Lx9 LINE L1 6990 7204 -440 3 753 309 136 48 176 chr9 22150319 22150360 -101925812 + Lx9 LINE L1 7536 7572 -72 3 753 1186 15 0 0 chr9 22150360 22150494 -101925678 + B1_Mm SINE Alu 2 135 -12 3 753 231 61 0 0 chr9 22150497 22150530 -101925642 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 753 309 136 48 176 chr9 22150530 22150609 -101925563 + Lx9 LINE L1 7573 7644 0 3 753 1385 83 16 5 chr9 22150613 22150806 -101925366 + B2_Mm2 SINE B2 1 195 0 3 754 237 135 0 0 chr9 22151339 22151391 -101924781 + (A)n Simple_repeat Simple_repeat 1 52 0 3 754 920 143 14 0 chr9 22151516 22151663 -101924509 + B1_Mur4 SINE Alu 2 150 0 3 754 433 275 7 64 chr9 22151931 22152071 -101924101 + B1F1 SINE Alu 13 144 -5 3 754 474 232 0 10 chr9 22152375 22152475 -101923697 + B3 SINE B2 108 206 -10 3 754 201 167 0 0 chr9 22152479 22152515 -101923657 + T-rich Low_complexity Low_complexity 1 36 0 3 754 1197 47 0 7 chr9 22152516 22152665 -101923507 - B1_Mus1 SINE Alu 0 148 1 3 754 239 54 0 26 chr9 22152784 22152822 -101923350 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 3 754 1135 132 21 5 chr9 22152825 22153016 -101923156 + B2_Mm2 SINE B2 2 195 0 3 754 198 0 0 0 chr9 22153016 22153038 -101923134 + (GGAA)n Simple_repeat Simple_repeat 4 25 0 3 754 629 288 52 5 chr9 22153069 22153282 -101922890 + ID_B1 SINE B4 2 224 0 3 754 45 0 0 0 chr9 22153533 22153578 -101922594 + AT_rich Low_complexity Low_complexity 1 45 0 3 754 213 132 0 0 chr9 22153746 22153784 -101922388 + (A)n Simple_repeat Simple_repeat 1 38 0 3 754 305 223 72 31 chr9 22154400 22154497 -101921675 + ID_B1 SINE B4 124 224 0 3 754 346 286 9 37 chr9 22154968 22155077 -101921095 + PB1D10 SINE Alu 6 111 -6 3 754 1167 197 98 135 chr9 22155524 22155923 -101920249 + ORR1C2 LTR MaLR 1 384 0 3 754 377 309 36 7 chr9 22156025 22156162 -101920010 - B1F SINE Alu -6 143 3 3 754 1164 173 22 0 chr9 22156956 22157182 -101918990 + ORR1B2 LTR MaLR 135 365 -2 3 754 3291 41 8 5 chr9 22157331 22157726 -101918446 + MTA_Mm LTR MaLR 1 396 0 3 754 198 0 0 0 chr9 22158121 22158143 -101918029 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 754 778 182 61 41 chr9 22158332 22158665 -101917507 + RMER10B LTR ERVL 1 388 -10 3 754 293 219 0 15 chr9 22158680 22158745 -101917427 - RMER10B LTR ERVL -334 64 1 3 754 234 62 0 0 chr9 22158792 22158824 -101917348 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 754 1186 36 0 0 chr9 22158824 22158963 -101917209 - B1_Mus2 SINE Alu -8 139 1 3 754 589 141 165 0 chr9 22159030 22159151 -101917021 + B1_Mur3 SINE Alu 1 141 -8 3 754 934 40 16 0 chr9 22159151 22159277 -101916895 + B1_Mus1 SINE Alu 21 148 0 3 754 205 186 0 0 chr9 22159281 22159324 -101916848 + A-rich Low_complexity Low_complexity 1 43 0 3 754 228 319 10 50 chr9 22159505 22159604 -101916568 + RSINE1 SINE B4 31 125 -40 3 754 593 230 190 0 chr9 22159690 22159864 -101916308 - B3 SINE B2 -5 211 5 3 754 336 48 0 0 chr9 22159892 22159934 -101916238 + (TTA)n Simple_repeat Simple_repeat 2 43 0 3 754 390 259 80 0 chr9 22159937 22160049 -101916123 + Lx8 LINE L1 7155 7275 -198 3 754 226 229 42 0 chr9 22160071 22160119 -101916053 + ID4 SINE ID 33 82 -1 3 754 233 281 71 92 chr9 22161113 22161211 -101914961 - B1_Mus2 SINE Alu -47 100 5 3 754 1203 55 0 7 chr9 22161876 22162023 -101914149 - B1_Mm SINE Alu 0 147 2 3 754 830 38 0 0 chr9 22162320 22162426 -101913746 - B2_Mm2 SINE B2 -88 107 2 3 754 389 191 0 130 chr9 22163407 22163515 -101912657 + MT2B LTR ERVL 164 257 -344 3 754 892 118 15 0 chr9 22163418 22163554 -101912618 + B1_Mur4 SINE Alu 9 146 -4 3 754 1393 238 86 48 chr9 22163697 22164174 -101911998 + RLTR18B LTR ERVK 5 499 -13 3 754 730 199 0 8 chr9 22164236 22164368 -101911804 + B1_Mur2 SINE Alu 18 148 -1 3 754 271 282 35 0 chr9 22164477 22164562 -101911610 + B4A SINE B4 1 88 -204 3 754 228 146 0 59 chr9 22164661 22164712 -101911460 - tRNA-Ala-GCY_ tRNA tRNA 0 75 28 3 754 305 148 0 0 chr9 22164671 22164725 -101911447 - ID4_ SINE ID -9 74 21 3 754 1502 246 35 35 chr9 22165748 22165871 -101910301 + MMAR1 DNA Mariner 822 944 -342 3 754 715 190 206 6 chr9 22165871 22166051 -101910121 + B3 SINE B2 1 216 0 3 754 1502 246 35 35 chr9 22166051 22166391 -101909781 + MMAR1 DNA Mariner 945 1285 -1 3 754 230 243 41 41 chr9 22166391 22166426 -101909746 + ID_B1 SINE B4 179 213 -11 3 754 243 0 0 0 chr9 22166433 22166460 -101909712 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 754 1350 136 51 5 chr9 22166515 22166730 -101909442 + Lx4A LINE L1 6834 7058 0 3 754 210 288 60 36 chr9 22166852 22166935 -101909237 - MIR SINE MIR -73 189 105 3 754 526 277 6 51 chr9 22167705 22167861 -101908311 + B3A SINE B2 50 198 0 3 754 678 153 42 35 chr9 22167866 22167996 -101908176 + B1_Mus1 SINE Alu 3 136 -12 3 754 180 0 0 0 chr9 22167996 22168016 -101908156 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 754 678 153 42 35 chr9 22168016 22168027 -101908145 + B1_Mus1 SINE Alu 137 145 -3 3 754 759 43 270 0 chr9 22168243 22168358 -101907814 - B1_Mus2 SINE Alu 0 147 2 3 754 1252 41 0 0 chr9 22168805 22168952 -101907220 - B1_Mus1 SINE Alu 0 148 2 3 754 491 270 145 47 chr9 22168986 22169262 -101906910 + L1M3 LINE L1 3946 4248 -1892 3 754 327 300 36 0 chr9 22169354 22169464 -101906708 + B1F SINE Alu 7 120 -29 3 754 369 216 44 18 chr9 22169589 22169702 -101906470 + ID_B1 SINE B4 27 142 -82 3 754 723 271 116 61 chr9 22169821 22170280 -101905892 + RLTR20B2 LTR ERVK 20 503 -57 3 754 312 271 136 0 chr9 22170380 22170535 -101905637 + L1M3 LINE L1 4572 4747 -1399 3 754 336 288 161 83 chr9 22170614 22171037 -101905135 + L1MB2 LINE L1 4988 5443 -728 3 754 438 113 0 0 chr9 22171044 22171115 -101905057 - B1_Mm SINE Alu 0 147 77 3 754 282 345 0 0 chr9 22171356 22171440 -101904732 + MER44A DNA MER2_type 1 84 -255 3 754 446 227 110 32 chr9 22171588 22171794 -101904378 + L1MB2 LINE L1 5907 6138 -33 3 754 261 250 153 20 chr9 22171811 22171909 -101904263 - PB1D10 SINE Alu -6 111 1 3 754 506 218 64 8 chr9 22171956 22172081 -101904091 + B1_Mm SINE Alu 2 133 -14 3 754 206 250 0 0 chr9 22172089 22172133 -101904039 + A-rich Low_complexity Low_complexity 1 44 0 3 754 224 355 87 22 chr9 22172141 22172220 -101903952 + B4 SINE B4 82 163 -129 3 754 747 162 49 14 chr9 22172220 22172364 -101903808 + B1_Mur4 SINE Alu 1 149 -1 3 754 224 355 87 22 chr9 22172364 22172422 -101903750 + B4 SINE B4 164 228 -64 3 754 318 169 0 0 chr9 22172503 22172568 -101903604 + G-rich Low_complexity Low_complexity 2 66 0 3 754 417 297 20 55 chr9 22173496 22173642 -101902530 + B1F2 SINE Alu 2 142 -7 3 754 437 149 42 11 chr9 22175087 22175182 -101900990 + ORR1D2 LTR MaLR 273 370 0 3 754 1579 157 125 6 chr9 22175797 22176125 -101900047 + ORR1B2 LTR MaLR 1 367 0 3 754 299 248 32 81 chr9 22176431 22176554 -101899618 + PB1D7 SINE Alu 1 117 -3 3 754 251 265 205 0 chr9 22176788 22176871 -101899301 + B1F1 SINE Alu 1 100 -49 3 754 480 224 8 25 chr9 22177021 22177140 -101899032 + B1F SINE Alu 1 117 -32 3 754 255 319 66 0 chr9 22177147 22177238 -101898934 + B1F SINE Alu 40 136 -13 3 754 800 239 56 0 chr9 22177296 22177493 -101898679 + B3 SINE B2 3 210 -6 3 754 1580 47 5 0 chr9 22177874 22178065 -101898107 + B2_Mm1a SINE B2 2 193 0 3 754 407 299 80 0 chr9 22178153 22178290 -101897882 - B3A SINE B2 0 198 51 3 754 528 271 87 16 chr9 22178495 22178679 -101897493 + B4 SINE B4 28 224 -68 3 754 1089 62 0 76 chr9 22179692 22179849 -101896323 + B1_Mm SINE Alu 2 146 -1 3 754 454 91 0 0 chr9 22180199 22180265 -101895907 + B1_Mus2 SINE Alu 82 147 0 3 754 312 27 0 0 chr9 22180313 22180350 -101895822 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 754 28 71 0 0 chr9 22180368 22180424 -101895748 + AT_rich Low_complexity Low_complexity 1 56 0 3 754 22 56 0 0 chr9 22181040 22181076 -101895096 + AT_rich Low_complexity Low_complexity 1 36 0 3 754 180 0 0 0 chr9 22181180 22181200 -101894972 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 754 615 100 108 9 chr9 22181200 22181311 -101894861 - B1_Mur2 SINE Alu -13 136 15 3 754 726 148 49 0 chr9 22181794 22181936 -101894236 + URR1A DNA MER1_type 78 226 0 3 754 539 285 7 0 chr9 22181936 22182068 -101894104 + RSINE1 SINE B4 25 157 -8 3 754 21 36 0 0 chr9 22182076 22182104 -101894068 + AT_rich Low_complexity Low_complexity 1 28 0 3 754 1174 116 21 21 chr9 22182108 22182301 -101893871 + B2_Mm2 SINE B2 2 194 -1 3 754 567 43 0 0 chr9 22182444 22182514 -101893658 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 754 904 81 0 245 chr9 22182541 22182642 -101893530 + B1_Mus1 SINE Alu 1 56 -92 3 754 1179 74 0 0 chr9 22182642 22182790 -101893382 - B1_Mus1 SINE Alu 0 148 1 3 754 904 81 0 245 chr9 22182790 22182884 -101893288 + B1_Mus1 SINE Alu 57 148 0 3 754 883 219 6 0 chr9 22182910 22183093 -101893079 + B3 SINE B2 3 186 -30 4 754 596 222 23 23 chr9 22183357 22183486 -101892686 + ETnERV2-int LTR ERVK 7074 7202 -204 4 754 197 111 44 0 chr9 22184228 22184273 -101891899 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 4 754 409 242 10 10 chr9 22184341 22184437 -101891735 - PB1D10 SINE Alu -21 96 1 4 754 322 221 52 0 chr9 22184370 22184447 -101891725 - ID_B1 SINE B4 -75 149 69 4 754 380 304 122 52 chr9 22185516 22185787 -101890385 - B4A SINE B4 -1 291 2 4 754 392 300 26 26 chr9 22185817 22185971 -101890201 + RSINE1 SINE B4 4 157 -8 4 754 725 169 174 0 chr9 22186017 22186195 -101889977 + B3 SINE B2 8 216 0 4 754 1422 55 22 0 chr9 22186230 22186412 -101889760 + B2_Mm1t SINE B2 2 187 -6 4 754 427 292 69 0 chr9 22187090 22187220 -101888952 + B4A SINE B4 141 279 -13 4 754 276 322 74 68 chr9 22187585 22187748 -101888424 + RSINE1 SINE B4 2 165 0 4 754 627 264 26 68 chr9 22187763 22187954 -101888218 - B3A SINE B2 -15 183 1 4 754 618 259 66 61 chr9 22187987 22188168 -101888004 - B3 SINE B2 -34 182 1 4 754 1386 71 43 0 chr9 22188194 22188378 -101887794 + B2_Mm2 SINE B2 1 192 -3 4 754 656 281 105 87 chr9 22188416 22188862 -101887310 + MLT1D LTR MaLR 2 452 -53 4 754 870 172 27 7 chr9 22188862 22189008 -101887164 - B1_Mur2 SINE Alu 0 149 1 4 754 656 281 105 87 chr9 22189008 22189056 -101887116 + MLT1D LTR MaLR 453 505 0 4 754 22 35 0 0 chr9 22189269 22189298 -101886874 + AT_rich Low_complexity Low_complexity 1 29 0 4 754 1237 34 0 7 chr9 22189440 22189587 -101886585 + B1_Mus2 SINE Alu 2 147 0 4 754 366 23 0 0 chr9 22189683 22189726 -101886446 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 4 754 2569 140 41 37 chr9 22189813 22190272 -101885900 + RMER6B LTR ERVK 1 461 0 4 754 292 318 70 43 chr9 22191057 22191244 -101884928 + MER105 DNA DNA 8 199 -5 4 754 385 188 23 1 chr9 22191798 22191892 -101884280 - B1_Mur3 SINE Alu -53 94 1 4 754 928 248 14 5 chr9 22192026 22192233 -101883939 - B3 SINE B2 -6 210 2 4 754 25 31 0 0 chr9 22193654 22193686 -101882486 + GC_rich Low_complexity Low_complexity 1 32 0 4 754 303 230 188 34 chr9 22194587 22194704 -101881468 + RSINE1 SINE B4 2 136 -29 4 754 1166 76 6 0 chr9 22195446 22195604 -101880568 + B2_Mm1t SINE B2 3 161 -32 4 754 438 69 0 0 chr9 22195604 22195662 -101880510 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 4 754 1095 221 10 0 chr9 22195730 22195934 -101880238 + B3 SINE B2 1 206 -10 4 754 482 163 76 0 chr9 22196346 22196438 -101879734 + B1F SINE Alu 44 142 -7 4 754 357 276 28 19 chr9 22196467 22196574 -101879598 + PB1D7 SINE Alu 5 112 -8 4 754 556 227 0 9 chr9 22196704 22196815 -101879357 - ID_B1 SINE B4 -22 202 93 4 754 888 58 2 70 chr9 22196916 22197358 -101878814 + (TTC)n Simple_repeat Simple_repeat 1 411 0 4 754 219 103 0 0 chr9 22197358 22197387 -101878785 + (TCC)n Simple_repeat Simple_repeat 3 31 0 4 754 1137 59 0 0 chr9 22197398 22197534 -101878638 - B1_Mus2 SINE Alu -8 139 4 4 754 31 44 0 0 chr9 22197941 22197986 -101878186 + AT_rich Low_complexity Low_complexity 1 45 0 4 754 244 233 65 65 chr9 22198240 22198261 -101877911 - B4 SINE B4 -200 92 1 4 754 521 84 0 0 chr9 22198261 22198332 -101877840 - B2_Mm2 SINE B2 -124 71 1 4 754 692 209 159 0 chr9 22198456 22198638 -101877534 + B3 SINE B2 1 211 -5 4 754 227 220 20 0 chr9 22198727 22198777 -101877395 - MLT1A1 LTR MaLR -339 69 19 4 754 224 189 0 0 chr9 22199035 22199072 -101877100 + B1F SINE Alu 88 124 -25 4 754 198 0 0 0 chr9 22199083 22199105 -101877067 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 4 754 291 140 0 0 chr9 22199107 22199157 -101877015 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 754 257 288 146 39 chr9 22199177 22199307 -101876865 + RSINE1 SINE B4 3 146 -19 4 754 330 113 48 0 chr9 22199361 22199423 -101876749 - Lx9 LINE L1 -5 7639 7575 4 754 1211 82 11 27 chr9 22199439 22199627 -101876545 - B2_Mm1t SINE B2 0 193 9 4 754 3122 185 45 19 chr9 22199631 22200249 -101875923 - Lx9 LINE L1 -217 7427 6794 4 754 436 165 85 32 chr9 22200250 22200344 -101875828 - Lx9 LINE L1 -1163 6481 6383 4 754 24 32 0 0 chr9 22200348 22200379 -101875793 + AT_rich Low_complexity Low_complexity 1 31 0 4 754 985 106 150 0 chr9 22200919 22201079 -101875093 - B2_Mm1t SINE B2 -8 185 2 4 754 341 167 0 0 chr9 22201118 22201178 -101874994 - ID_B1 SINE B4 -3 221 162 4 754 505 186 58 25 chr9 22201178 22201299 -101874873 - ID_B1 SINE B4 -17 207 83 4 754 1075 64 43 0 chr9 22201536 22201677 -101874495 + B1_Mus1 SINE Alu 2 148 0 4 754 676 248 85 44 chr9 22202371 22202656 -101873516 - Charlie12 DNA MER1_type -7 2866 2569 4 754 1284 27 0 0 chr9 22202656 22202802 -101873370 - B1_Mus2 SINE Alu 0 147 2 4 754 404 151 125 31 chr9 22202839 22202935 -101873237 + B3 SINE B2 1 105 -111 4 754 760 163 0 0 chr9 22202949 22203072 -101873100 - B1_Mur3 SINE Alu -6 143 21 4 754 21 0 0 0 chr9 22203105 22203126 -101873046 + AT_rich Low_complexity Low_complexity 1 21 0 4 754 1375 77 5 16 chr9 22204173 22204358 -101871814 + B2_Mm1t SINE B2 2 184 -9 4 754 1214 48 0 0 chr9 22204568 22204715 -101871457 + B1_Mus2 SINE Alu 1 147 0 4 754 240 329 44 57 chr9 22204754 22204912 -101871260 + RSINE1 SINE B4 2 157 -8 4 754 26 0 0 0 chr9 22204938 22204964 -101871208 + AT_rich Low_complexity Low_complexity 1 26 0 4 754 690 302 85 26 chr9 22204969 22205425 -101870747 + L1_Mur3 LINE L1 3042 3503 -2640 4 754 307 270 153 47 chr9 22205426 22205608 -101870564 + B3A SINE B2 1 198 0 4 754 440 277 18 8 chr9 22205608 22205762 -101870410 + L1_Mur3 LINE L1 3604 3764 -2382 4 754 471 191 73 0 chr9 22205784 22205894 -101870278 + PB1D9 SINE Alu 3 120 0 4 754 258 236 0 40 chr9 22206323 22206398 -101869774 + L1_Mur3 LINE L1 3862 3933 -2207 4 754 419 119 0 0 chr9 22206402 22206469 -101869703 + MTD LTR MaLR 1 67 -352 4 754 294 247 92 10 chr9 22206543 22206641 -101869531 - RSINE1 SINE B4 -31 134 29 4 754 1255 175 12 19 chr9 22206625 22206882 -101869290 + ORR1B1 LTR MaLR 131 385 -9 4 754 243 291 6 0 chr9 22206889 22206963 -101869209 - PB1D10 SINE Alu -66 83 7 4 754 393 237 82 82 chr9 22206984 22207052 -101869120 - ID_B1 SINE B4 0 224 150 4 754 1399 89 11 0 chr9 22207052 22207242 -101868930 - B2_Mm1t SINE B2 0 193 2 4 754 393 237 82 82 chr9 22207242 22207320 -101868852 - ID_B1 SINE B4 -75 149 78 4 754 946 91 27 34 chr9 22207371 22207519 -101868653 + B1_Mus1 SINE Alu 2 148 0 4 754 1410 99 5 0 chr9 22208061 22208253 -101867919 + B2_Mm1a SINE B2 1 193 0 4 754 996 62 47 0 chr9 22208336 22208465 -101867707 + B1_Mus1 SINE Alu 2 136 -12 4 754 266 0 0 29 chr9 22208466 22208501 -101867671 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 754 542 54 0 13 chr9 22208506 22208581 -101867591 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 4 754 492 207 106 18 chr9 22208587 22208700 -101867472 - B1_Mur2 SINE Alu -20 129 7 4 754 739 215 154 11 chr9 22208709 22208897 -101867275 - B3 SINE B2 0 216 2 4 754 26 0 0 0 chr9 22208897 22208923 -101867249 + AT_rich Low_complexity Low_complexity 1 26 0 4 754 522 221 73 44 chr9 22208937 22209074 -101867098 - B1_Mur1 SINE Alu 0 149 9 4 754 203 203 0 17 chr9 22209145 22209205 -101866967 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 754 286 256 13 13 chr9 22209343 22209422 -101866750 + ID4 SINE ID 1 79 -4 4 754 616 187 9 0 chr9 22210238 22210345 -101865827 - B3 SINE B2 -108 108 1 4 754 1131 79 12 0 chr9 22210366 22210530 -101865642 - B2_Mm2 SINE B2 -3 192 27 4 754 11929 63 14 41 chr9 22210619 22211399 -101864773 - MusHAL1 LINE L1 -626 2086 1312 4 754 1329 77 44 6 chr9 22211399 22211581 -101864591 - B2_Mm2 SINE B2 -6 189 1 4 754 11929 63 14 41 chr9 22211581 22211775 -101864397 - MusHAL1 LINE L1 -1401 1311 1131 4 754 1361 66 11 16 chr9 22211775 22211960 -101864212 - B2_Mm1t SINE B2 -9 184 1 4 754 11929 63 14 41 chr9 22211960 22212263 -101863909 - MusHAL1 LINE L1 -1582 1130 844 4 754 1609 31 5 15 chr9 22212263 22212458 -101863714 - B2_Mm1a SINE B2 0 193 1 4 754 11929 63 14 41 chr9 22212458 22212945 -101863227 - MusHAL1 LINE L1 -1869 843 368 4 754 653 68 0 0 chr9 22212945 22213033 -101863139 - B2_Mm2 SINE B2 -107 88 1 4 754 225 0 0 0 chr9 22213087 22213112 -101863060 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 4 754 196 335 204 15 chr9 22213184 22213390 -101862782 - L2a LINE L2 -185 3241 2997 4 754 1587 249 62 31 chr9 22213558 22214038 -101862134 + RCHARR1 DNA MER1_type 3 497 -477 4 754 859 228 57 0 chr9 22214039 22214232 -101861940 + B3 SINE B2 2 205 -11 4 754 464 274 38 30 chr9 22214288 22214420 -101861752 + ID_B1 SINE B4 80 212 -12 4 754 690 204 18 12 chr9 22214460 22214624 -101861548 + RCHARR1 DNA MER1_type 532 696 -278 4 754 811 177 14 0 chr9 22214625 22214766 -101861406 + RSINE1 SINE B4 4 146 -19 4 754 330 26 0 0 chr9 22214774 22214813 -101861359 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 754 682 127 90 6 chr9 22214820 22214986 -101861186 + RCHARR1 DNA MER1_type 686 865 -109 4 754 648 281 64 11 chr9 22215053 22215240 -101860932 - ID_B1 SINE B4 -25 199 3 4 754 563 198 99 8 chr9 22215270 22215435 -101860737 - B3 SINE B2 -14 184 5 4 754 21 57 0 0 chr9 22215441 22215476 -101860696 + AT_rich Low_complexity Low_complexity 1 35 0 4 754 322 290 72 7 chr9 22215477 22215616 -101860556 - B1F1 SINE Alu 0 149 2 4 754 238 219 11 0 chr9 22216778 22216833 -101859339 - PB1D10 SINE Alu -72 77 19 4 754 279 132 241 0 chr9 22217188 22217271 -101858901 + B1_Mur1 SINE Alu 46 148 -1 4 754 277 272 125 10 chr9 22218322 22218426 -101857746 + PB1 SINE Alu 7 122 -5 4 754 498 270 34 0 chr9 22218435 22218583 -101857589 + ID_B1 SINE B4 1 153 -71 5 754 271 252 17 2 chr9 22218894 22218960 -101857212 - PB1D10 SINE Alu -54 66 1 5 754 416 168 66 0 chr9 22219002 22219139 -101857033 + CT-rich Low_complexity Low_complexity 2 147 0 5 754 536 215 124 0 chr9 22219302 22219423 -101856749 + ID_B1 SINE B4 88 223 -1 5 754 193 57 0 54 chr9 22219488 22219525 -101856647 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 754 234 238 0 16 chr9 22219533 22219597 -101856575 - PB1D9 SINE Alu -57 63 1 5 754 445 226 38 0 chr9 22219600 22219706 -101856466 - PB1D9 SINE Alu 0 120 11 5 754 799 48 40 0 chr9 22219828 22219953 -101856219 + (GA)n Simple_repeat Simple_repeat 2 131 0 5 754 247 297 274 51 chr9 22219967 22220018 -101856154 - RSINE1 SINE B4 -20 145 100 5 754 3311 41 8 2 chr9 22220018 22220412 -101855760 - MTA_Mm LTR MaLR 0 396 1 5 754 247 297 274 51 chr9 22220412 22220477 -101855695 - RSINE1 SINE B4 -66 99 3 5 754 335 205 41 22 chr9 22221064 22221150 -101855022 - B1F SINE Alu -3 146 40 5 754 255 213 120 0 chr9 22221184 22221259 -101854913 - L1ME3A LINE L1 -223 5950 5867 5 754 248 347 0 0 chr9 22221532 22221607 -101854565 + ID4_ SINE ID 3 77 -6 5 754 434 113 71 20 chr9 22221609 22221708 -101854464 + B1F2 SINE Alu 46 149 0 5 754 256 317 120 0 chr9 22221757 22221899 -101854273 + B3A SINE B2 1 159 -39 5 754 835 286 179 11 chr9 22222628 22222992 -101853180 - Lx8 LINE L1 -361 7112 6688 5 754 510 216 77 8 chr9 22223019 22223136 -101853036 - RSINE1 SINE B4 -38 127 3 5 754 354 98 0 0 chr9 22223587 22223638 -101852534 + (TCC)n Simple_repeat Simple_repeat 1 51 0 5 754 1081 75 0 0 chr9 22223793 22223927 -101852245 + B1_Mus1 SINE Alu 2 135 -13 5 754 315 0 0 0 chr9 22223927 22223962 -101852210 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 5 754 1635 37 0 10 chr9 22224045 22224238 -101851934 - B2_Mm1a SINE B2 -2 191 1 5 754 412 289 137 7 chr9 22224245 22224398 -101851774 - ID_B1 SINE B4 -19 205 33 5 754 679 234 28 7 chr9 22224460 22224602 -101851570 - B1_Mur1 SINE Alu -2 147 3 5 754 496 189 144 38 chr9 22224744 22224865 -101851307 + B1F SINE Alu 1 136 -13 5 754 252 0 0 0 chr9 22224865 22224893 -101851279 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 754 980 220 0 0 chr9 22225406 22225588 -101850584 - B3 SINE B2 0 216 35 5 754 3313 65 23 16 chr9 22225870 22226306 -101849866 - L1Md_F2 LINE L1 -12 6570 6132 5 754 267 54 0 0 chr9 22226370 22226407 -101849765 + (T)n Simple_repeat Simple_repeat 1 37 0 5 754 353 259 123 53 chr9 22226410 22226524 -101849648 - ID_B1 SINE B4 0 224 103 5 754 459 161 103 0 chr9 22226651 22226738 -101849434 + B1F1 SINE Alu 2 97 -52 5 754 258 257 29 0 chr9 22226903 22226973 -101849199 + ID4_ SINE ID 2 73 -10 5 754 437 257 115 0 chr9 22227098 22227211 -101848961 - ID_B1 SINE B4 -7 217 92 5 754 503 304 37 7 chr9 22227346 22227482 -101848690 - ID_B1 SINE B4 0 224 85 5 754 715 201 27 20 chr9 22227669 22227816 -101848356 - B1_Mur1 SINE Alu 0 149 2 5 754 565 220 50 22 chr9 22227904 22228041 -101848131 - B1_Mus2 SINE Alu 0 127 1 5 754 304 303 113 53 chr9 22227943 22227974 -101848198 - MT2B LTR ERVL -343 258 162 5 754 306 273 0 61 chr9 22227974 22228042 -101848130 - B4A SINE B4 -140 152 86 5 754 324 288 41 48 chr9 22228042 22228188 -101847984 - B1F SINE Alu -4 145 1 5 754 306 273 0 61 chr9 22228188 22228201 -101847971 - B4A SINE B4 -207 85 76 5 754 304 303 113 53 chr9 22228201 22228238 -101847934 - MT2B LTR ERVL -440 161 101 5 754 364 336 37 0 chr9 22229676 22229780 -101846392 - ID_B1 SINE B4 -12 212 105 5 754 475 274 66 33 chr9 22229780 22229931 -101846241 + RSINE1 SINE B4 4 159 -6 5 754 288 212 387 29 chr9 22230131 22230279 -101845893 - ID_B1 SINE B4 -19 205 5 5 754 297 247 79 0 chr9 22230438 22230521 -101845651 + PB1D7 SINE Alu 15 103 -46 5 754 241 230 80 96 chr9 22230573 22230698 -101845474 - MTD LTR MaLR -100 319 197 5 754 260 231 3 0 chr9 22230737 22230798 -101845374 + ID4 SINE ID 8 69 -14 5 754 844 216 130 7 chr9 22230810 22231006 -101845166 - B3 SINE B2 -7 209 9 5 754 482 279 47 81 chr9 22230987 22231159 -101845013 + ID_B1 SINE B4 49 214 -10 5 754 1466 65 22 0 chr9 22231401 22231586 -101844586 + B2_Mm2 SINE B2 1 189 -6 5 754 302 350 65 41 chr9 22231661 22231831 -101844341 - MIRc SINE MIR -35 233 60 5 754 788 119 14 50 chr9 22232169 22232310 -101843862 + B1_Mur4 SINE Alu 14 149 -1 5 754 214 231 39 0 chr9 22232405 22232457 -101843715 + B1_Mus2 SINE Alu 3 56 -91 5 754 335 130 221 32 chr9 22232483 22232578 -101843594 + PB1D9 SINE Alu 5 117 -3 5 754 1946 145 32 107 chr9 22232583 22233023 -101843149 - MTB_Mm LTR MaLR 0 407 1 5 754 410 298 69 12 chr9 22233525 22233685 -101842487 - B3 SINE B2 -12 204 36 5 754 262 180 0 62 chr9 22234110 22234175 -101841997 + B3 SINE B2 150 210 -6 5 754 318 223 189 11 chr9 22235323 22235418 -101840754 - B1F SINE Alu -10 139 28 5 754 525 147 9 18 chr9 22235432 22235543 -101840629 + CT-rich Low_complexity Low_complexity 4 113 0 5 754 721 216 21 7 chr9 22235544 22235684 -101840488 - B1_Mur2 SINE Alu -6 143 2 5 754 217 233 0 48 chr9 22235883 22235946 -101840226 + (TATG)n Simple_repeat Simple_repeat 4 63 0 5 754 196 229 57 3 chr9 22236407 22236473 -101839699 + MIR SINE MIR 91 165 -103 5 754 3394 134 90 29 chr9 22236900 22237778 -101838394 + ORR1C1-int LTR MaLR 1 1509 0 5 754 1778 148 135 3 chr9 22237779 22238112 -101838060 + ORR1C1 LTR MaLR 2 378 0 5 754 1156 64 7 0 chr9 22239322 22239463 -101836709 + B1_Mus1 SINE Alu 1 142 -6 5 754 289 307 13 0 chr9 22240055 22240130 -101836042 + PB1D10 SINE Alu 1 76 -41 5 754 274 236 0 35 chr9 22240163 22240220 -101835952 + RSINE1 SINE B4 98 152 -13 5 754 453 289 73 62 chr9 22240346 22240538 -101835634 - B3A SINE B2 -1 197 4 5 754 372 300 65 80 chr9 22240562 22240837 -101835335 - L1MB7 LINE L1 -20 6164 5894 5 754 551 204 35 0 chr9 22240864 22240977 -101835195 - B1_Mur1 SINE Alu -5 144 28 5 754 495 262 0 0 chr9 22241183 22241290 -101834882 - PB1D7 SINE Alu -9 111 5 5 754 244 306 34 134 chr9 22241377 22241592 -101834580 - L1MC LINE L1 -652 5528 5336 5 754 1464 70 21 0 chr9 22241592 22241779 -101834393 - B2_Mm2 SINE B2 -4 191 1 5 754 335 269 52 58 chr9 22241779 22241941 -101834231 - L1MC LINE L1 -845 5335 5176 5 754 273 29 0 0 chr9 22242179 22242213 -101833959 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 754 230 231 0 19 chr9 22242216 22242269 -101833903 - RSINE1 SINE B4 -32 133 82 5 754 276 30 0 0 chr9 22242704 22242737 -101833435 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 5 754 577 221 112 24 chr9 22242738 22242863 -101833309 - B1_Mur2 SINE Alu -12 137 2 5 754 537 261 87 0 chr9 22242943 22243081 -101833091 - ID_B1 SINE B4 -69 155 6 5 754 371 164 40 14 chr9 22243098 22243172 -101833000 - B1_Mur1 SINE Alu 0 149 74 5 754 296 271 0 56 chr9 22243172 22243188 -101832984 - ID_B1 SINE B4 -2 222 138 5 754 256 239 39 78 chr9 22243205 22243282 -101832890 + AluF_3 SINE Alu 137 210 -101 5 754 294 246 0 15 chr9 22243268 22243334 -101832838 - B4 SINE B4 -225 67 3 5 754 789 140 94 17 chr9 22243365 22243546 -101832626 + B2_Mm2 SINE B2 1 195 0 5 754 325 343 0 19 chr9 22243573 22243677 -101832495 - PB1D10 SINE Alu -13 104 3 5 754 614 183 59 30 chr9 22244039 22244174 -101831998 + B1_Mur2 SINE Alu 2 140 -9 5 754 372 118 0 0 chr9 22244559 22244627 -101831545 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 5 754 240 229 153 28 chr9 22244695 22244767 -101831405 - B1F SINE Alu -1 148 68 5 754 349 300 51 172 chr9 22244704 22244861 -101831311 - ID_B1 SINE B4 -8 216 79 5 754 411 295 38 15 chr9 22244963 22245094 -101831078 - Tigger1 DNA MER2_type -1029 1389 1256 5 754 396 0 0 0 chr9 22245181 22245225 -101830947 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 754 830 256 44 5 chr9 22245245 22245449 -101830723 + B3 SINE B2 1 212 -4 5 754 584 299 18 12 chr9 22245457 22245623 -101830549 - Tigger1 DNA MER2_type -1157 1261 1095 5 754 281 281 20 40 chr9 22245629 22245729 -101830443 - Tigger1 DNA MER2_type -2201 217 120 5 754 260 349 23 0 chr9 22246081 22246167 -101830005 - Tigger1 DNA MER2_type -2311 107 20 5 754 870 156 13 26 chr9 22246372 22246523 -101829649 + B1_Mur2 SINE Alu 1 149 0 5 754 639 150 154 23 chr9 22246610 22246740 -101829432 - B1_Mur2 SINE Alu -2 147 1 5 754 242 327 65 0 chr9 22246767 22246874 -101829298 - Lx8 LINE L1 -205 7268 7155 5 754 596 313 121 28 chr9 22246954 22247342 -101828830 - Lx8 LINE L1 -464 7009 6586 5 754 265 320 40 0 chr9 22247600 22247675 -101828497 + ID4 SINE ID 5 82 -1 5 754 2344 73 220 8 chr9 22247803 22248028 -101828144 - RLTR44E LTR ERVK 0 452 167 5 754 459 0 0 0 chr9 22248028 22248079 -101828093 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 754 2344 73 220 8 chr9 22248079 22248226 -101827946 - RLTR44E LTR ERVK -286 166 3 5 754 579 207 0 59 chr9 22248311 22248429 -101827743 - PB1D9 SINE Alu -8 112 2 5 754 700 169 6 6 chr9 22249245 22249424 -101826748 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 754 770 183 0 6 chr9 22249437 22249929 -101826243 + (TG)n Simple_repeat Simple_repeat 1 488 0 5 754 216 0 0 0 chr9 22250146 22250170 -101826002 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 754 1003 208 172 16 chr9 22250497 22250805 -101825367 - RLTR20B2 LTR ERVK -154 406 51 5 754 757 278 28 119 chr9 22250814 22251100 -101825072 + Lx5 LINE L1 6221 6480 -570 5 754 1211 210 120 88 chr9 22251113 22251489 -101824683 - RLTR18B LTR ERVK -123 389 2 5 754 591 138 195 0 chr9 22251569 22251692 -101824480 + B1_Mus2 SINE Alu 1 147 0 6 754 549 0 0 0 chr9 22251731 22251792 -101824380 + (CAG)n Simple_repeat Simple_repeat 1 61 0 6 754 589 228 241 0 chr9 22252090 22252252 -101823920 + B4 SINE B4 2 202 -90 6 754 414 0 0 0 chr9 22252302 22252348 -101823824 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 754 714 245 7 14 chr9 22252360 22252505 -101823667 + B1_Mur1 SINE Alu 6 149 0 6 754 376 268 0 40 chr9 22252540 22252641 -101823531 - PB1D10 SINE Alu -5 112 16 6 754 216 226 0 0 chr9 22253148 22253210 -101822962 + CT-rich Low_complexity Low_complexity 2 63 0 6 754 577 234 110 39 chr9 22253532 22253714 -101822458 - ID_B1 SINE B4 -23 201 7 6 754 229 217 43 0 chr9 22253772 22253818 -101822354 + B1F1 SINE Alu 5 52 -97 6 754 194 62 31 0 chr9 22253839 22253871 -101822301 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 754 1193 49 21 0 chr9 22254034 22254178 -101821994 + B1_Mus2 SINE Alu 1 147 0 6 754 207 0 0 0 chr9 22254408 22254431 -101821741 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 754 306 329 14 0 chr9 22254438 22254543 -101821629 - PB1D10 SINE Alu -17 132 23 6 754 417 271 10 30 chr9 22254602 22254701 -101821471 - ID_B1 SINE B4 -17 207 111 6 754 323 306 37 0 chr9 22254721 22254829 -101821343 - PB1D7 SINE Alu -8 112 1 6 754 498 250 27 68 chr9 22254873 22255019 -101821153 - B1F1 SINE Alu -7 142 3 6 754 587 161 62 0 chr9 22255075 22255187 -101820985 + B3 SINE B2 2 120 -96 6 754 550 218 28 21 chr9 22255193 22255338 -101820834 - B1_Mur1 SINE Alu -2 147 2 6 754 888 212 15 25 chr9 22255452 22255650 -101820522 - B3A SINE B2 0 198 3 6 754 555 294 14 20 chr9 22255691 22255837 -101820335 - RSINE1 SINE B4 -6 159 15 6 754 659 203 45 39 chr9 22255877 22256031 -101820141 + RSINE1 SINE B4 2 156 -9 6 754 641 240 24 0 chr9 22256193 22256229 -101819943 + ID SINE ID 44 82 -142 6 754 431 283 26 0 chr9 22256229 22256342 -101819830 + PB1D10 SINE Alu 1 116 -1 6 754 227 260 37 74 chr9 22256649 22256757 -101819415 + B4A SINE B4 64 167 -125 6 754 436 276 10 0 chr9 22256690 22256788 -101819384 + PB1D10 SINE Alu 12 110 -7 6 754 392 230 18 30 chr9 22257005 22257117 -101819055 - B1_Mur1 SINE Alu -11 138 9 6 754 333 336 71 36 chr9 22257138 22257391 -101818781 - B4A SINE B4 -30 262 1 6 754 280 304 69 0 chr9 22257407 22257509 -101818663 - PB1D10 SINE Alu -2 115 7 6 754 420 261 28 50 chr9 22257911 22258052 -101818120 - ID_B1 SINE B4 -86 138 1 6 754 1029 15 0 82 chr9 22258591 22258737 -101817435 + B1_Mus1 SINE Alu 7 140 -8 6 754 228 24 48 24 chr9 22258737 22258779 -101817393 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 754 605 228 62 0 chr9 22258793 22258938 -101817234 + B3 SINE B2 63 216 0 6 754 305 275 25 12 chr9 22259203 22259284 -101816888 - B1_Mur4 SINE Alu -67 83 2 6 754 529 228 170 0 chr9 22259298 22259469 -101816703 - B3 SINE B2 -13 203 4 6 754 1288 70 64 0 chr9 22259567 22259738 -101816434 - B2_Mm1a SINE B2 -7 186 5 6 754 538 193 101 0 chr9 22259775 22259884 -101816288 - B1_Mur2 SINE Alu -29 120 1 6 754 245 250 0 98 chr9 22259884 22259928 -101816244 + YREP_Mm Unknown Unknown 321 354 -1458 6 754 676 253 6 40 chr9 22260261 22260434 -101815738 - B3 SINE B2 0 216 50 6 754 874 163 0 14 chr9 22260464 22260607 -101815565 + B1_Mur4 SINE Alu 8 148 -2 6 754 237 65 0 0 chr9 22260612 22260643 -101815529 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 754 187 250 23 0 chr9 22261022 22261066 -101815106 + MIRc SINE MIR 20 64 -204 6 754 383 287 0 11 chr9 22261098 22261186 -101814986 + RSINE1 SINE B4 79 165 0 6 754 354 108 0 0 chr9 22261289 22261354 -101814818 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 6 754 1199 163 46 5 chr9 22262841 22263057 -101813115 + URR1B DNA MER1_type 1 225 0 6 754 1223 203 219 38 chr9 22263654 22263997 -101812175 - MTD LTR MaLR -14 405 1 6 754 517 183 144 0 chr9 22264648 22264752 -101811420 + PB1D9 SINE Alu 2 120 0 6 754 517 191 0 22 chr9 22265018 22265109 -101811063 - PB1D7 SINE Alu 0 120 32 6 754 272 318 45 0 chr9 22265294 22265382 -101810790 - PB1D7 SINE Alu -6 114 23 6 754 790 182 81 0 chr9 22265455 22265603 -101810569 - B3 SINE B2 -17 199 40 6 754 5640 182 78 14 chr9 22265619 22266724 -101809448 - MERVL_2A-int LTR ERVL -360 5401 4227 6 754 9264 160 42 18 chr9 22266719 22267664 -101808508 - MERVL_2A-int LTR ERVL -2063 3698 2738 6 754 1184 68 0 0 chr9 22267664 22267811 -101808361 - B1_Mus2 SINE Alu 0 147 1 6 754 9264 234 73 34 chr9 22267811 22269230 -101806942 - MERVL_2A-int LTR ERVL -3024 2737 1051 6 754 1401 69 11 11 chr9 22269230 22269421 -101806751 - B2_Mm1t SINE B2 -1 192 2 6 754 7129 207 149 31 chr9 22269421 22270367 -101805805 - MERVL_2A-int LTR ERVL -4571 1190 117 6 754 338 325 17 0 chr9 22270367 22270484 -101805688 - MT2B LTR ERVL -111 490 372 6 754 467 248 9 9 chr9 22270478 22270592 -101805580 + RCHARR1 DNA MER1_type 366 479 -495 6 754 516 221 129 29 chr9 22270634 22270774 -101805398 - RSINE1 SINE B4 -9 156 3 6 754 261 214 18 0 chr9 22270774 22270830 -101805342 + RCHARR1 DNA MER1_type 467 523 -451 6 754 983 207 35 0 chr9 22270839 22271037 -101805135 + B3 SINE B2 1 205 -11 6 754 1359 83 33 0 chr9 22271063 22271244 -101804928 + B2_Mm2 SINE B2 1 187 -8 6 754 1852 203 30 28 chr9 22271255 22271681 -101804491 + RCHARR1 DNA MER1_type 539 965 -9 6 754 446 0 19 0 chr9 22271910 22271964 -101804208 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 754 234 296 0 0 chr9 22272536 22272624 -101803548 + (CTG)n Simple_repeat Simple_repeat 1 88 0 6 754 219 125 0 0 chr9 22272800 22272840 -101803332 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 6 754 25 0 0 0 chr9 22272905 22272930 -101803242 + AT_rich Low_complexity Low_complexity 1 25 0 6 754 306 264 50 83 chr9 22272953 22273073 -101803099 + PB1D9 SINE Alu 5 120 0 6 754 449 276 81 40 chr9 22273081 22273255 -101802917 - B3A SINE B2 0 198 18 6 754 220 216 196 0 chr9 22273611 22273662 -101802510 + B1_Mur4 SINE Alu 29 89 -61 6 754 450 0 0 0 chr9 22273700 22273750 -101802422 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 754 872 83 60 8 chr9 22273750 22273883 -101802289 - B1_Mus1 SINE Alu -2 146 7 6 754 821 225 74 10 chr9 22274531 22274733 -101801439 + B3 SINE B2 1 215 -1 6 754 340 189 95 0 chr9 22274797 22274871 -101801301 + ID4_ SINE ID 1 81 -2 6 754 532 239 104 0 chr9 22274893 22275027 -101801145 + B1_Mur2 SINE Alu 2 149 0 6 754 535 223 101 61 chr9 22275140 22275288 -101800884 + RSINE1 SINE B4 5 158 -7 6 754 1455 38 5 47 chr9 22275320 22275512 -101800660 + B2_Mm1a SINE B2 1 184 -9 6 754 1245 102 11 0 chr9 22275520 22275697 -101800475 + B2_Mm1t SINE B2 2 180 -13 6 754 357 67 31 19 chr9 22275743 22275807 -101800365 + B2_Mm2 SINE B2 47 114 -102 6 754 204 40 0 0 chr9 22275825 22275850 -101800322 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 754 1184 48 7 0 chr9 22275866 22276012 -101800160 + B1_Mm SINE Alu 1 147 0 6 754 567 271 8 0 chr9 22276241 22276374 -101799798 - ID_B1 SINE B4 0 224 91 6 754 1133 200 12 16 chr9 22276487 22276736 -101799436 + RLTR31_Mur LTR ERVK 147 394 -159 6 754 484 162 46 37 chr9 22276735 22276844 -101799328 + RLTR31_Mm LTR ERVK 452 561 0 6 754 451 232 39 0 chr9 22276887 22276985 -101799187 - B1F SINE Alu -34 115 12 6 754 4883 110 67 9 chr9 22276987 22277773 -101798399 + ORR1A2-int LTR MaLR 401 1963 0 6 754 2496 71 6 58 chr9 22277773 22278118 -101798054 + ORR1A2 LTR MaLR 1 327 0 6 754 25 0 0 0 chr9 22278160 22278185 -101797987 + AT_rich Low_complexity Low_complexity 1 25 0 6 754 305 255 126 42 chr9 22278218 22278480 -101797692 + L1_Mur2 LINE L1 3122 3405 -2472 6 754 632 280 0 97 chr9 22278649 22278886 -101797286 + B3 SINE B2 3 216 0 6 754 296 262 11 2 chr9 22278890 22278984 -101797188 + L1_Mur3 LINE L1 3587 3679 -2467 6 754 238 102 0 48 chr9 22279019 22279081 -101797091 + A-rich Low_complexity Low_complexity 2 60 0 6 754 564 268 114 5 chr9 22279133 22279338 -101796834 + L1_Mur3 LINE L1 3769 3970 -2176 6 754 850 232 201 18 chr9 22279361 22279699 -101796473 - MTD LTR MaLR -14 405 6 6 754 373 325 30 6 chr9 22279706 22279873 -101796299 + L1M3 LINE L1 4001 4171 -1969 6 754 349 295 85 9 chr9 22281268 22281374 -101794798 - B1F1 SINE Alu -28 121 8 6 754 569 207 164 0 chr9 22281644 22281784 -101794388 - RSINE1 SINE B4 0 165 3 6 754 351 0 0 0 chr9 22282090 22282129 -101794043 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 755 942 151 0 0 chr9 22282503 22282642 -101793530 - B1_Mus1 SINE Alu -9 139 1 6 755 288 0 0 0 chr9 22283060 22283092 -101793080 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 755 358 183 73 0 chr9 22283093 22283175 -101792997 - RSINE1 SINE B4 -40 125 38 6 755 366 221 13 0 chr9 22283170 22283247 -101792925 + RSINE1 SINE B4 71 148 -17 6 755 455 241 50 14 chr9 22283297 22283436 -101792736 + B1F2 SINE Alu 6 149 0 6 755 218 383 0 0 chr9 22285003 22285084 -101791088 - ID_B1 SINE B4 -55 169 89 6 755 360 0 0 0 chr9 22285158 22285198 -101790974 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 6 755 1170 119 37 21 chr9 22285198 22285386 -101790786 - B2_Mm2 SINE B2 -3 192 2 6 755 2005 144 197 7 chr9 22286033 22286471 -101789701 - RMER1B Other Other 0 1066 546 6 755 565 198 58 0 chr9 22286707 22286828 -101789344 + ID_B1 SINE B4 82 209 -15 6 755 692 300 14 14 chr9 22287132 22287345 -101788827 - ID_B1 SINE B4 -8 216 4 7 755 528 231 159 105 chr9 22287436 22287712 -101788460 - B4 SINE B4 0 292 2 7 755 306 232 124 21 chr9 22287720 22287817 -101788355 - B1F2 SINE Alu -29 120 14 7 755 1000 84 0 7 chr9 22287862 22288006 -101788166 - B1_Mus1 SINE Alu 0 148 6 7 755 374 288 0 67 chr9 22288021 22288140 -101788032 - PB1D10 SINE Alu -5 112 2 7 755 330 313 151 52 chr9 22288343 22288515 -101787657 - ID_B1 SINE B4 -1 223 35 7 755 368 317 88 15 chr9 22288969 22289174 -101786998 - MER82 DNA MER2_type 0 653 434 7 755 269 224 104 0 chr9 22289194 22289261 -101786911 - RSINE1 SINE B4 -91 74 1 7 755 456 248 10 0 chr9 22289292 22289393 -101786779 + PB1D10 SINE Alu 9 110 -7 7 755 666 232 143 46 chr9 22289448 22289728 -101786444 - MER82 DNA MER2_type -309 344 38 7 755 3281 173 65 12 chr9 22290324 22290981 -101785191 - RLTR17 LTR ERVK 0 692 1 7 755 367 266 32 0 chr9 22291243 22291337 -101784835 + ID_B1 SINE B4 82 178 -46 7 755 346 299 37 0 chr9 22291337 22291350 -101784822 + PB1D10 SINE Alu 1 111 -6 7 755 3431 60 120 4 chr9 22291691 22292156 -101784016 - MURVY-LTR LTR ERV1 0 519 1 7 755 258 32 0 0 chr9 22292841 22292872 -101783300 + (CAA)n Simple_repeat Simple_repeat 2 32 0 7 755 1520 63 16 0 chr9 22293064 22293254 -101782918 - B2_Mm2 SINE B2 -1 194 2 7 755 229 210 81 0 chr9 22293500 22293562 -101782610 - L1_Mur2 LINE L1 -617 5260 5194 7 755 309 26 0 0 chr9 22293742 22293780 -101782392 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 755 614 181 42 209 chr9 22293926 22294185 -101781987 - Lx7 LINE L1 -663 7033 6818 7 755 1232 289 123 43 chr9 22294190 22294826 -101781346 - L1M2 LINE L1 -1071 5072 4412 7 755 563 275 69 10 chr9 22294826 22295028 -101781144 - B3 SINE B2 -1 215 2 7 755 1232 289 123 43 chr9 22295028 22295220 -101780952 - L1M2 LINE L1 -1732 4411 4178 7 755 395 214 146 0 chr9 22295628 22295731 -101780441 - PB1D7 SINE Alu 0 120 3 7 755 1350 188 12 0 chr9 22296202 22296452 -101779720 - ORR1C1 LTR MaLR -125 253 1 7 755 864 228 5 60 chr9 22296488 22296530 -101779642 + B3 SINE B2 1 38 -178 7 755 4281 124 51 39 chr9 22296530 22297276 -101778896 + RMER6A LTR ERVK 2 756 0 7 755 864 228 5 60 chr9 22297276 22297434 -101778738 + B3 SINE B2 39 190 -26 7 755 938 216 48 29 chr9 22297931 22298141 -101778031 - B3 SINE B2 -1 215 2 7 755 1043 253 103 23 chr9 22298609 22298997 -101777175 + MTD LTR MaLR 1 419 0 7 755 576 270 28 33 chr9 22299704 22299915 -101776257 - B3 SINE B2 -6 210 1 7 755 282 336 0 26 chr9 22300061 22300132 -101776040 - B1F1 SINE Alu -31 118 48 7 755 1222 190 126 84 chr9 22300132 22300302 -101775870 + ORR1D1 LTR MaLR 1 166 -208 7 755 180 0 0 0 chr9 22300302 22300322 -101775850 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 7 755 1222 190 126 84 chr9 22300322 22300507 -101775665 + ORR1D1 LTR MaLR 167 371 -3 7 755 282 336 0 26 chr9 22300507 22300551 -101775621 - B1F1 SINE Alu -102 47 6 7 755 399 281 82 43 chr9 22301512 22301769 -101774403 - B4A SINE B4 0 292 26 7 755 218 207 17 0 chr9 22301951 22302009 -101774163 + CT-rich Low_complexity Low_complexity 2 60 0 7 755 310 175 12 12 chr9 22302120 22302201 -101773971 + CT-rich Low_complexity Low_complexity 4 84 0 7 755 225 292 0 0 chr9 22302209 22302257 -101773915 + polypyrimidine Low_complexity Low_complexity 3 50 0 7 755 183 80 0 0 chr9 22302260 22302285 -101773887 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 7 755 225 302 104 0 chr9 22302303 22302399 -101773773 + Lx9 LINE L1 7267 7372 -272 7 755 234 287 33 42 chr9 22302453 22302573 -101773599 + Lx9 LINE L1 7521 7639 -5 7 755 747 239 17 6 chr9 22302577 22302758 -101773414 + B3 SINE B2 2 184 -32 7 755 2120 148 41 36 chr9 22303076 22303119 -101773053 - MTC LTR MaLR 0 421 384 7 755 3162 51 13 5 chr9 22303119 22303512 -101772660 - MTA_Mm LTR MaLR 0 396 1 7 755 2120 148 41 36 chr9 22303512 22303887 -101772285 - MTC LTR MaLR -38 383 1 7 755 503 248 9 0 chr9 22303985 22304090 -101772082 + ID_B1 SINE B4 87 192 -32 7 755 236 289 22 11 chr9 22304861 22304952 -101771220 - PB1D7 SINE Alu -10 110 19 7 755 424 309 96 30 chr9 22305025 22305255 -101770917 - Lx8 LINE L1 -10 7463 7219 7 755 573 267 30 36 chr9 22305300 22305467 -101770705 - Lx8 LINE L1 -718 6755 6590 7 755 186 43 0 0 chr9 22305472 22305495 -101770677 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 7 755 820 191 15 0 chr9 22305495 22305631 -101770541 - B1_Mur1 SINE Alu -11 138 1 7 755 231 179 0 0 chr9 22305670 22305709 -101770463 + RLTR25A LTR ERVK 1 39 -989 7 755 528 155 31 0 chr9 22305707 22305804 -101770368 + RLTR25A LTR ERVK 1004 1103 0 7 755 248 246 14 14 chr9 22305804 22305874 -101770298 + CT-rich Low_complexity Low_complexity 3 72 0 7 755 262 333 0 14 chr9 22305882 22305952 -101770220 - ID4 SINE ID -6 77 9 7 755 217 242 112 71 chr9 22306907 22307005 -101769167 - B3A SINE B2 0 198 97 7 755 291 211 93 37 chr9 22307454 22307562 -101768610 + Charlie8 DNA MER1_type 48 161 -2267 7 755 246 297 18 73 chr9 22307883 22307992 -101768180 - MIR3 SINE MIR -48 160 58 7 755 489 163 171 0 chr9 22308099 22308222 -101767950 - B1_Mur2 SINE Alu -5 144 1 7 755 261 238 71 0 chr9 22309200 22309284 -101766888 - B1F SINE Alu -7 142 53 7 755 276 30 0 0 chr9 22309537 22309570 -101766602 + (TAA)n Simple_repeat Simple_repeat 2 34 0 7 755 629 244 134 0 chr9 22309645 22309809 -101766363 + B3 SINE B2 1 186 -30 7 755 1067 236 77 7 chr9 22309815 22310088 -101766084 - Lx8 LINE L1 -298 7175 6884 7 755 278 222 92 69 chr9 22311202 22311214 -101764958 - PB1D10 SINE Alu -28 89 78 7 755 351 0 0 0 chr9 22311214 22311253 -101764919 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 755 278 222 92 69 chr9 22311253 22311327 -101764845 - PB1D10 SINE Alu -40 77 1 7 755 597 210 118 47 chr9 22311419 22311589 -101764583 - B3A SINE B2 -16 182 1 7 755 34 0 0 0 chr9 22312133 22312167 -101764005 + AT_rich Low_complexity Low_complexity 1 34 0 7 755 615 230 29 0 chr9 22312174 22312313 -101763859 - B1_Mur1 SINE Alu -6 143 1 7 755 2587 97 35 66 chr9 22312849 22313335 -101762837 + RLTR31B_Mm LTR ERVK 1 471 -86 7 755 279 198 148 0 chr9 22313642 22313723 -101762449 - MER57D LTR ERV1 -292 119 27 7 755 280 301 0 0 chr9 22314508 22314601 -101761571 - MER57C2 LTR ERV1 -8 426 334 7 755 2325 153 34 0 chr9 22314601 22315013 -101761159 + L1_Mur2 LINE L1 2412 2837 -3040 7 755 243 216 26 26 chr9 22315013 22315127 -101761045 + (TTATA)n Simple_repeat Simple_repeat 1 114 0 7 755 911 223 70 78 chr9 22315143 22315386 -101760786 + MTD LTR MaLR 144 407 -12 7 755 2502 227 163 44 chr9 22315388 22315452 -101760720 + MTD-int LTR MaLR 1 68 -1190 7 755 1809 159 89 19 chr9 22315452 22315618 -101760554 + ORR1C2 LTR MaLR 1 182 -202 7 755 441 0 0 0 chr9 22315618 22315667 -101760505 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 755 1809 159 89 19 chr9 22315667 22315859 -101760313 + ORR1C2 LTR MaLR 183 383 -1 7 755 2502 227 163 44 chr9 22315859 22316696 -101759476 + MTD-int LTR MaLR 69 1030 -228 7 755 3324 48 2 2 chr9 22316696 22317092 -101759080 + MTA_Mm LTR MaLR 1 396 0 7 755 2502 227 163 44 chr9 22317092 22317164 -101759008 + MTD-int LTR MaLR 1031 1091 -167 7 755 25 65 0 0 chr9 22318636 22318682 -101757490 + AT_rich Low_complexity Low_complexity 1 46 0 7 755 1920 166 35 22 chr9 22318762 22319131 -101757041 + ORR1D1 LTR MaLR 1 374 0 7 755 573 152 8 53 chr9 22319234 22319394 -101756778 - B1_Mus2 SINE Alu -1 148 10 7 755 279 0 0 0 chr9 22319830 22319861 -101756311 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 7 755 378 286 9 18 chr9 22319873 22319987 -101756185 - B1F1 SINE Alu -29 120 8 7 755 287 229 142 7 chr9 22320069 22320210 -101755962 - MER2 DNA MER2_type -99 246 87 7 755 227 173 0 19 chr9 22320563 22320616 -101755556 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 755 481 235 71 173 chr9 22320618 22320778 -101755394 - B3 SINE B2 -13 203 43 7 755 527 230 175 27 chr9 22320778 22320961 -101755211 + B3 SINE B2 1 210 -6 7 755 481 235 71 173 chr9 22320961 22321026 -101755146 - B3 SINE B2 -174 42 1 7 755 546 287 7 0 chr9 22321342 22321476 -101754696 + B1F SINE Alu 1 135 -14 7 755 209 33 33 0 chr9 22321476 22321506 -101754666 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 7 755 237 270 101 0 chr9 22322101 22322190 -101753982 + MER34 LTR ERV1 374 471 -71 7 755 216 0 0 0 chr9 22322776 22322800 -101753372 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 755 276 292 33 16 chr9 22323583 22323705 -101752467 - MER5A1 DNA MER1_type -2 164 41 7 755 306 197 0 0 chr9 22324046 22324107 -101752065 - RSINE1 SINE B4 -85 80 20 7 755 592 206 6 3 chr9 22324240 22324569 -101751603 + (CA)n Simple_repeat Simple_repeat 1 330 0 7 755 400 296 48 0 chr9 22324982 22325107 -101751065 - Lx8 LINE L1 -523 6950 6820 7 755 198 93 105 0 chr9 22325136 22325222 -101750950 + (CCCTG)n Simple_repeat Simple_repeat 3 97 0 7 755 297 287 11 0 chr9 22325688 22325782 -101750390 - ORR1E LTR MaLR -253 106 12 7 755 222 37 0 0 chr9 22325872 22325899 -101750273 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 755 1453 182 190 14 chr9 22325917 22326269 -101749903 + MTD LTR MaLR 6 419 0 7 755 389 284 122 51 chr9 22326598 22326658 -101749514 - ID_B1 SINE B4 -5 219 164 7 755 3273 110 184 20 chr9 22326658 22327251 -101748921 - RMER6C LTR ERVK 0 690 1 7 755 389 284 122 51 chr9 22327251 22327346 -101748826 - ID_B1 SINE B4 -61 163 53 7 755 334 347 0 0 chr9 22327365 22327463 -101748709 - PB1D10 SINE Alu -7 110 13 7 755 4267 19 0 0 chr9 22328883 22329368 -101746804 - L1Md_T LINE L1 -231 5652 5168 7 755 8883 5 0 0 chr9 22329368 22330333 -101745839 + L1Md_T LINE L1 5618 6582 0 7 755 1028 198 40 124 chr9 22330396 22330628 -101745544 - ORR1C2 LTR MaLR 0 384 173 7 755 224 71 48 0 chr9 22330628 22330670 -101745502 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 7 755 1028 169 670 76 chr9 22330670 22330777 -101745395 - ORR1C2 LTR MaLR -212 172 1 7 755 509 294 0 0 chr9 22330778 22330897 -101745275 - B1F1 SINE Alu -25 124 6 7 755 343 258 39 67 chr9 22331024 22331128 -101745044 + PB1D10 SINE Alu 8 108 -40 7 755 509 128 29 29 chr9 22331134 22331271 -101744901 + GA-rich Low_complexity Low_complexity 1 137 0 7 755 3250 129 60 40 chr9 22331318 22331889 -101744283 - RMER4B LTR ERVK 0 585 4 7 755 21 57 0 0 chr9 22333126 22333161 -101743011 + AT_rich Low_complexity Low_complexity 1 35 0 8 755 426 293 124 44 chr9 22333371 22333621 -101742551 + B4 SINE B4 6 275 -17 8 755 387 0 0 0 chr9 22333626 22333669 -101742503 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 755 25 31 0 0 chr9 22335081 22335113 -101741059 + AT_rich Low_complexity Low_complexity 1 32 0 8 755 388 227 5 5 chr9 22335362 22335455 -101740717 - PB1D10 SINE Alu -15 102 13 8 755 435 100 0 0 chr9 22335559 22335629 -101740543 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 755 352 285 32 8 chr9 22335766 22335890 -101740282 + MTEa LTR MaLR 53 179 -200 8 755 265 261 0 14 chr9 22336315 22336385 -101739787 - B1F SINE Alu -11 138 70 8 755 240 35 0 0 chr9 22336568 22336597 -101739575 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 755 455 274 55 0 chr9 22336634 22336798 -101739374 - B3A SINE B2 -22 176 4 8 755 1143 218 176 8 chr9 22336868 22337220 -101738952 - MTD LTR MaLR -8 411 1 8 755 275 267 22 0 chr9 22337268 22337358 -101738814 + L1M5 LINE L1 5381 5472 -690 8 755 771 172 0 27 chr9 22337982 22338131 -101738041 - B1_Mur4 SINE Alu -2 148 4 8 755 645 250 97 0 chr9 22338167 22338363 -101737809 - B3 SINE B2 -1 215 1 8 755 240 258 30 0 chr9 22338388 22338454 -101737718 - PB1D10 SINE Alu -20 97 30 8 755 304 190 0 25 chr9 22338791 22338872 -101737300 + CT-rich Low_complexity Low_complexity 1 79 0 8 755 390 233 22 0 chr9 22338876 22338966 -101737206 - ID_B1 SINE B4 0 224 133 8 755 252 250 69 20 chr9 22338966 22338977 -101737195 - B1F SINE Alu 0 148 43 8 755 234 254 127 0 chr9 22339430 22339501 -101736671 + MER34 LTR ERV1 391 470 -72 8 755 502 204 19 0 chr9 22339521 22339629 -101736543 - RMER21B LTR ERV1 -658 184 75 8 755 647 127 16 33 chr9 22339749 22339871 -101736301 + B1_Mus1 SINE Alu 29 148 0 8 755 189 0 0 0 chr9 22339871 22339892 -101736280 + (A)n Simple_repeat Simple_repeat 1 21 0 8 755 33 56 0 0 chr9 22339938 22339992 -101736180 + AT_rich Low_complexity Low_complexity 1 54 0 8 755 435 114 73 37 chr9 22339997 22340079 -101736093 + B1_Mus1 SINE Alu 28 112 -36 8 755 341 267 57 38 chr9 22340226 22340331 -101735841 + RMER21B LTR ERV1 394 500 -342 8 755 1046 35 0 34 chr9 22340384 22340531 -101735641 - B1_Mm SINE Alu 0 147 6 8 755 261 196 0 0 chr9 22340716 22340772 -101735400 - MTE2b LTR MaLR -323 56 1 8 755 699 259 108 34 chr9 22341224 22341548 -101734624 + MTE2a LTR MaLR 13 360 -19 8 755 289 267 94 9 chr9 22342062 22342168 -101734004 - PB1D10 SINE Alu 0 117 3 8 755 317 331 78 58 chr9 22342227 22342381 -101733791 + RSINE1 SINE B4 3 159 -6 8 755 309 68 0 0 chr9 22342420 22342464 -101733708 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 755 327 262 57 19 chr9 22342879 22342984 -101733188 - PB1D10 SINE Alu -1 116 8 8 755 458 147 165 0 chr9 22345329 22345438 -101730734 - B1_Mur3 SINE Alu -6 143 17 8 755 2478 245 184 54 chr9 22346024 22347360 -101728812 - Lx9 LINE L1 -1 7643 6135 8 755 314 299 156 18 chr9 22347453 22347620 -101728552 - B3A SINE B2 -6 192 3 8 755 219 258 14 43 chr9 22348625 22348694 -101727478 - PB1D7 SINE Alu 0 120 54 8 755 23 0 0 0 chr9 22348779 22348802 -101727370 + AT_rich Low_complexity Low_complexity 1 23 0 8 755 23 0 0 0 chr9 22348861 22348884 -101727288 + AT_rich Low_complexity Low_complexity 1 23 0 8 755 253 312 38 94 chr9 22348888 22348994 -101727178 - RSINE1 SINE B4 -2 163 64 8 755 318 175 0 17 chr9 22349840 22349898 -101726274 - RSINE1 SINE B4 -106 59 3 8 755 344 215 183 0 chr9 22349907 22350000 -101726172 - PB1D10 SINE Alu -7 110 1 8 755 568 256 81 25 chr9 22350360 22350596 -101725576 - L1MA8 LINE L1 -5 6286 6038 8 755 354 250 65 50 chr9 22351155 22351294 -101724878 + B1F SINE Alu 4 144 -4 8 755 268 151 0 54 chr9 22351392 22351448 -101724724 + MTC LTR MaLR 1 53 -368 8 755 1296 223 33 10 chr9 22351449 22351748 -101724424 - Lx6 LINE L1 -632 6828 6523 8 755 415 321 76 41 chr9 22351958 22352130 -101724042 + B3A SINE B2 2 179 -19 8 755 754 201 55 16 chr9 22352594 22352785 -101723387 - B3 SINE B2 -16 179 2 8 755 528 277 71 12 chr9 22353744 22353912 -101722260 - B3 SINE B2 -37 179 2 8 755 905 223 18 28 chr9 22354087 22354304 -101721868 - B3 SINE B2 0 216 2 8 755 22 70 0 0 chr9 22354316 22354359 -101721813 + AT_rich Low_complexity Low_complexity 1 43 0 8 755 264 217 17 0 chr9 22354404 22354464 -101721708 + Lx9 LINE L1 7578 7638 -6 8 755 331 277 89 34 chr9 22354784 22354930 -101721242 - RSINE1 SINE B4 0 165 12 8 755 474 291 110 20 chr9 22355596 22355842 -101720330 - L1ME2 LINE L1 -209 5955 5688 8 755 699 200 21 14 chr9 22356375 22356517 -101719655 - B1_Mur3 SINE Alu -1 148 6 8 755 1932 310 84 24 chr9 22356526 22357478 -101718694 - Lx8 LINE L1 -687 6786 5770 8 755 322 308 88 25 chr9 22357552 22357794 -101718378 - RMER4A LTR ERVK -323 262 7 8 755 435 95 0 0 chr9 22357825 22357899 -101718273 + (TC)n Simple_repeat Simple_repeat 1 74 0 8 755 216 0 0 0 chr9 22357899 22357923 -101718249 + (TA)n Simple_repeat Simple_repeat 1 24 0 8 755 1111 95 0 0 chr9 22357928 22358086 -101718086 - B2_Mm2 SINE B2 -37 158 1 8 755 619 239 122 16 chr9 22358146 22358433 -101717739 - Lx8 LINE L1 -1912 5784 5434 8 755 1228 41 0 7 chr9 22358448 22358597 -101717575 + B1_Mus1 SINE Alu 1 148 0 8 755 261 0 0 0 chr9 22358618 22358647 -101717525 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 755 556 52 0 13 chr9 22358665 22358743 -101717429 + B1_Mus2 SINE Alu 71 147 0 8 755 261 0 0 0 chr9 22358764 22358793 -101717379 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 755 302 162 250 0 chr9 22358808 22358876 -101717296 + L1_Mur3 LINE L1 3847 3931 -1949 8 755 22 35 0 0 chr9 22359355 22359384 -101716788 + AT_rich Low_complexity Low_complexity 1 29 0 8 755 381 200 83 37 chr9 22359589 22359698 -101716474 - B1F1 SINE Alu -6 114 1 8 755 252 0 0 0 chr9 22360402 22360430 -101715742 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 8 755 233 353 52 0 chr9 22361127 22361243 -101714929 + MIRc SINE MIR 60 181 -87 8 755 456 240 41 105 chr9 22361563 22361735 -101714437 - B4 SINE B4 -1 291 131 8 755 5206 60 42 8 chr9 22362510 22363216 -101712956 - Lx3_Mus LINE L1 0 7009 6280 8 755 1557 54 0 0 chr9 22363225 22363411 -101712761 - B2_Mm1t SINE B2 -7 186 1 8 755 359 202 11 0 chr9 22363559 22363648 -101712524 + G-rich Low_complexity Low_complexity 1 90 0 8 755 518 0 16 0 chr9 22363910 22363972 -101712200 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 755 510 275 75 61 chr9 22364161 22364440 -101711732 - B4A SINE B4 -8 284 2 8 755 1207 59 0 1 chr9 22364602 22364763 -101711409 + B2_Mm2 SINE B2 4 165 -28 8 755 180 0 0 0 chr9 22364763 22364783 -101711389 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 8 755 1013 149 11 27 chr9 22364783 22364807 -101711365 + B2_Mm1t SINE B2 166 186 -7 8 755 702 149 25 0 chr9 22364841 22365002 -101711170 + (TATG)n Simple_repeat Simple_repeat 4 168 0 8 755 8253 41 8 3 chr9 22365747 22366811 -101709361 - L1Md_F2 LINE L1 -3 6579 5511 8 755 21 57 0 0 chr9 22366868 22366903 -101709269 + AT_rich Low_complexity Low_complexity 1 35 0 8 755 204 206 0 0 chr9 22366928 22366962 -101709210 + polypurine Low_complexity Low_complexity 1 34 0 8 755 822 216 307 24 chr9 22367367 22367519 -101708653 - ORR1D1 LTR MaLR -2 372 180 8 755 909 138 0 0 chr9 22367519 22367678 -101708494 + (GA)n Simple_repeat Simple_repeat 2 160 0 8 755 822 216 307 24 chr9 22367678 22367815 -101708357 - ORR1D1 LTR MaLR -195 179 1 8 755 1634 31 5 0 chr9 22368848 22369039 -101707133 - B2_Mm1t SINE B2 0 193 2 8 755 206 391 68 5 chr9 22369582 22369803 -101706369 + MIRb SINE MIR 34 268 0 8 755 501 345 0 6 chr9 22371459 22371637 -101704535 + (TG)n Simple_repeat Simple_repeat 2 178 0 8 755 343 57 7 96 chr9 22372684 22372819 -101703353 + (TA)n Simple_repeat Simple_repeat 1 123 0 8 755 706 211 35 0 chr9 22372860 22373002 -101703170 + B1_Mur2 SINE Alu 2 148 -1 8 755 321 284 51 19 chr9 22373426 22373584 -101702588 - B3 SINE B2 0 216 54 8 755 243 188 0 0 chr9 22374107 22374155 -101702017 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 755 797 56 9 0 chr9 22374824 22374931 -101701241 + (TCTCC)n Simple_repeat Simple_repeat 5 112 0 8 755 313 276 57 9 chr9 22374949 22375055 -101701117 - PB1D10 SINE Alu -5 112 2 8 755 253 278 0 0 chr9 22375143 22375197 -101700975 - RSINE1 SINE B4 -108 57 4 8 755 503 263 52 7 chr9 22375231 22375384 -101700788 - RSINE1 SINE B4 -4 161 2 8 755 982 50 33 78 chr9 22375396 22375549 -101700623 - B1_Mus2 SINE Alu 0 147 2 8 755 4861 127 25 24 chr9 22376511 22377294 -101698878 - Lx2B LINE L1 -46 6954 6171 8 755 265 311 27 120 chr9 22377321 22377504 -101698668 - RLTR17 LTR ERVK -190 502 337 8 755 403 258 80 26 chr9 22377542 22377722 -101698450 - RLTR16 LTR ERVK -299 206 34 8 755 1425 109 0 0 chr9 22377722 22377915 -101698257 - L1_Mm LINE L1 -298 5585 5393 8 755 276 259 74 0 chr9 22377917 22377998 -101698174 - ORR1E LTR MaLR -272 87 1 8 755 230 253 75 32 chr9 22378011 22378105 -101698067 - MLT1A1 LTR MaLR -310 98 1 8 755 662 168 7 0 chr9 22379926 22380063 -101696109 + CT-rich Low_complexity Low_complexity 4 141 0 9 755 439 259 12 0 chr9 22380139 22380305 -101695867 + (CA)n Simple_repeat Simple_repeat 2 169 0 9 755 3332 216 104 17 chr9 22380489 22381366 -101694806 - Lx7 LINE L1 -4 7692 6740 9 755 450 285 38 56 chr9 22381515 22381675 -101694497 - RSINE1 SINE B4 0 165 9 9 755 458 286 151 78 chr9 22381716 22382856 -101693316 - L1MEc LINE L1 -4888 1512 290 9 755 234 0 0 0 chr9 22382910 22382936 -101693236 + (T)n Simple_repeat Simple_repeat 1 26 0 9 755 685 220 52 6 chr9 22384886 22385060 -101691112 - B3 SINE B2 -7 209 28 9 755 341 269 0 0 chr9 22385597 22385675 -101690497 + L1_Rod LINE L1 4711 4788 -1059 9 755 1482 208 47 65 chr9 22385673 22386140 -101690032 + L1_Rod LINE L1 5040 5579 -718 9 755 232 217 217 0 chr9 22386146 22386238 -101689934 + Lx9 LINE L1 7533 7644 0 9 755 261 0 0 0 chr9 22386600 22386629 -101689543 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 9 755 286 93 0 0 chr9 22387412 22387455 -101688717 - URR1B DNA MER1_type 0 225 183 9 755 1420 68 10 20 chr9 22387468 22387663 -101688509 + B2_Mm1t SINE B2 1 193 0 9 755 2171 151 45 2 chr9 22387664 22388062 -101688110 + L1_Mur2 LINE L1 3056 3470 -2407 9 755 1731 181 57 22 chr9 22388054 22388609 -101687563 - L1_Mur1 LINE L1 -4418 1459 890 9 755 330 218 10 112 chr9 22389181 22389377 -101686795 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 9 755 280 230 10 112 chr9 22389433 22389629 -101686543 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 9 755 389 303 99 35 chr9 22390385 22390556 -101685616 + B3A SINE B2 1 182 -16 9 755 5279 132 65 23 chr9 22390600 22391300 -101684872 + L1VL2 LINE L1 65 811 -5524 9 755 3141 63 3 10 chr9 22391300 22391684 -101684488 + L1_Mus2 LINE L1 6185 6565 -1 9 755 14002 82 13 30 chr9 22391684 22392679 -101683493 + L1VL2 LINE L1 812 1796 -1819 9 755 274 0 0 0 chr9 22392679 22392710 -101683462 - U6 snRNA snRNA -76 31 1 9 755 14002 82 13 30 chr9 22392710 22393863 -101682309 + L1VL2 LINE L1 1797 2940 -675 9 755 3883 107 12 45 chr9 22393864 22393949 -101682223 + L1_Mm LINE L1 5216 5292 -591 9 755 1277 41 0 7 chr9 22393949 22394096 -101682076 + B1_Mus2 SINE Alu 1 146 -1 9 755 3883 107 12 45 chr9 22394096 22394606 -101681566 + L1_Mm LINE L1 5293 5791 -92 9 755 1003 102 73 0 chr9 22394608 22394745 -101681427 + B1_Mus1 SINE Alu 2 148 0 9 755 200 86 0 28 chr9 22394800 22394836 -101681336 + (CAAAC)n Simple_repeat Simple_repeat 5 39 0 9 755 6253 93 11 19 chr9 22394847 22395703 -101680469 + L1_Mus3 LINE L1 5783 6631 -7 9 755 884 251 10 25 chr9 22395900 22396100 -101680072 - B3A SINE B2 0 198 2 9 755 358 296 112 0 chr9 22396149 22396274 -101679898 - B1F SINE Alu -8 141 3 9 755 271 224 89 45 chr9 22396279 22396391 -101679781 - PB1D7 SINE Alu -3 117 1 9 755 225 0 0 0 chr9 22397263 22397288 -101678884 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 9 755 447 233 125 0 chr9 22397305 22397425 -101678747 - RSINE1 SINE B4 -28 137 3 9 755 250 286 73 123 chr9 22398104 22398181 -101677991 - B4A SINE B4 -1 291 112 9 755 274 272 114 53 chr9 22398181 22398313 -101677859 - B1F1 SINE Alu 0 149 10 9 755 251 287 1 11 chr9 22398591 22398668 -101677504 + ID4 SINE ID 2 82 -70 9 755 223 375 19 28 chr9 22398668 22398698 -101677474 + ID_B1 SINE B4 2 107 -117 9 755 737 249 113 79 chr9 22398982 22399299 -101676873 - RMER1A Other Other -586 444 2 9 755 306 260 0 14 chr9 22399307 22399381 -101676791 - RMER1A Other Other -848 182 110 9 755 1044 144 207 0 chr9 22399381 22399555 -101676617 - B3 SINE B2 -6 210 1 9 755 297 0 0 0 chr9 22400540 22400573 -101675599 + (TC)n Simple_repeat Simple_repeat 2 34 0 9 755 666 96 0 0 chr9 22400585 22400689 -101675483 + (GA)n Simple_repeat Simple_repeat 1 104 0 9 755 399 257 52 17 chr9 22400729 22400844 -101675328 + PB1D9 SINE Alu 2 120 0 9 755 245 312 92 15 chr9 22401378 22401508 -101674664 + B1F2 SINE Alu 1 140 -9 9 755 491 324 104 36 chr9 22402854 22403046 -101673126 + ID_B1 SINE B4 3 207 -17 9 755 268 273 152 29 chr9 22403176 22403380 -101672792 + MIR SINE MIR 7 235 -27 9 755 582 86 0 0 chr9 22404387 22404468 -101671704 + (TCC)n Simple_repeat Simple_repeat 2 82 0 9 755 1266 68 0 0 chr9 22404478 22404624 -101671548 - B1_Mus2 SINE Alu 0 147 2 9 755 363 260 181 31 chr9 22404940 22405166 -101671006 + L1MA5 LINE L1 6038 6297 -3 9 755 1876 138 45 60 chr9 22405332 22405664 -101670508 + ORR1A4 LTR MaLR 1 327 -2 9 755 960 126 0 68 chr9 22405798 22405960 -101670212 + B2_Mm2 SINE B2 2 152 -43 9 755 369 0 0 0 chr9 22405961 22406002 -101670170 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 9 755 308 350 76 63 chr9 22406017 22406352 -101669820 - LTR33 LTR ERVL -116 399 1 9 755 228 204 20 20 chr9 22406709 22406759 -101669413 - ID4_ SINE ID -23 60 11 9 755 3974 54 8 0 chr9 22406817 22407313 -101668859 - L1_Mm LINE L1 -1227 4656 4157 9 755 5888 176 48 64 chr9 22407372 22408659 -101667513 - Lx5 LINE L1 0 7050 5784 9 755 314 263 56 29 chr9 22408644 22408809 -101667363 - L1MEg LINE L1 -4664 1578 1436 9 755 462 296 30 42 chr9 22408883 22409049 -101667123 - RSINE1 SINE B4 0 165 2 9 755 429 315 26 33 chr9 22409223 22409374 -101666798 - RSINE1 SINE B4 -14 151 2 9 755 1205 282 14 63 chr9 22409791 22410139 -101666033 + ORR1D2 LTR MaLR 32 362 -8 9 755 265 214 56 28 chr9 22410146 22410218 -101665954 - B1F1 SINE Alu -71 78 5 9 755 23 0 0 0 chr9 22410384 22410407 -101665765 + AT_rich Low_complexity Low_complexity 1 23 0 9 755 34 0 0 0 chr9 22410830 22410864 -101665308 + AT_rich Low_complexity Low_complexity 1 34 0 9 755 1888 95 45 4 chr9 22410866 22411131 -101665041 - Lx3A LINE L1 0 6981 6706 9 755 1268 54 0 0 chr9 22411900 22412047 -101664125 - B1_Mus2 SINE Alu 0 147 1 9 755 226 333 80 0 chr9 22412721 22412796 -101663376 + MIRc SINE MIR 75 155 -113 9 755 1327 179 4 30 chr9 22412813 22413043 -101663129 + URR1B DNA MER1_type 1 224 -1 9 755 218 264 13 89 chr9 22413115 22413194 -101662978 + MER5B DNA MER1_type 105 177 -1 9 755 192 245 18 36 chr9 22413245 22413300 -101662872 - MIRm SINE MIR -108 168 115 9 94 1747 210 71 14 chr9 22413306 22413673 -101662499 + MTD LTR MaLR 18 405 -14 9 756 861 204 7 0 chr9 22414421 22414568 -101661604 - B1_Mur1 SINE Alu -1 148 1 9 756 234 278 8 115 chr9 22414572 22414702 -101661470 - RMER1C Other Other -1 1341 1226 9 756 832 271 197 28 chr9 22414598 22415024 -101661148 - Lx8 LINE L1 -2 7471 6974 9 756 276 30 0 0 chr9 22415025 22415058 -101661114 + (TC)n Simple_repeat Simple_repeat 1 33 0 9 756 735 155 0 0 chr9 22415063 22415698 -101660474 + (TG)n Simple_repeat Simple_repeat 1 635 0 9 756 441 287 16 0 chr9 22415699 22415821 -101660351 - Lx8 LINE L1 -517 6956 6833 9 756 2035 268 103 12 chr9 22415856 22416450 -101659722 + Lx8 LINE L1 6126 6773 -700 9 756 2863 171 23 13 chr9 22416770 22417291 -101658881 - RLTR11A LTR ERVK -2 526 1 9 756 526 311 11 40 chr9 22417317 22417491 -101658681 + MER20 DNA MER1_type 4 172 -47 9 756 650 284 41 16 chr9 22418169 22418412 -101657760 + Charlie26a DNA MER1_type 77 325 0 9 756 486 0 0 0 chr9 22418626 22418680 -101657492 + (TC)n Simple_repeat Simple_repeat 1 54 0 9 756 562 318 46 7 chr9 22418682 22418830 -101657342 - B3A SINE B2 -26 172 19 9 756 276 259 111 0 chr9 22418830 22418911 -101657261 + B1F1 SINE Alu 1 90 -59 9 756 298 282 85 28 chr9 22419054 22419160 -101657012 - B1F1 SINE Alu -8 141 30 9 756 187 381 76 15 chr9 22419617 22419814 -101656358 + L2a LINE L2 3215 3423 -3 9 756 475 297 57 14 chr9 22420884 22421024 -101655148 + RSINE1 SINE B4 1 146 -19 9 756 319 268 177 75 chr9 22421064 22421248 -101654924 - L1_Mur3 LINE L1 -211 5669 5461 9 756 1156 269 113 68 chr9 22421248 22421834 -101654338 - RLTR18 LTR ERVK 0 616 5 9 756 319 313 19 74 chr9 22421834 22421888 -101654284 - L1_Mur3 LINE L1 -807 5493 5442 9 756 1393 232 67 42 chr9 22421891 22422247 -101653925 + MTE2a LTR MaLR 11 375 -4 9 756 3217 224 146 38 chr9 22422308 22423412 -101652760 - Lx9 LINE L1 -802 6842 5546 9 756 270 0 0 0 chr9 22423412 22423442 -101652730 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 9 756 3040 196 103 78 chr9 22423442 22423513 -101652659 - Lx9 LINE L1 -302 5545 5532 9 756 255 61 0 0 chr9 22423513 22423546 -101652626 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 9 756 3040 196 103 78 chr9 22423546 22424114 -101652058 - Lx9 LINE L1 -316 5531 4904 9 756 297 287 113 24 chr9 22424138 22424508 -101651664 - L1M2 LINE L1 -4344 2505 2151 9 756 261 0 0 0 chr9 22425122 22425151 -101651021 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 9 756 654 254 32 151 chr9 22425221 22425298 -101650874 - B4 SINE B4 -12 280 217 9 756 342 0 0 0 chr9 22425298 22425336 -101650836 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 9 756 654 254 32 151 chr9 22425336 22425536 -101650636 - B4 SINE B4 -76 216 36 9 756 267 260 34 130 chr9 22425763 22425909 -101650263 - L2 LINE L2 -684 2735 2604 9 756 231 314 111 56 chr9 22426237 22426345 -101649827 + L2c LINE L2 3272 3385 -2 9 756 21 36 0 0 chr9 22427500 22427528 -101648644 + AT_rich Low_complexity Low_complexity 1 28 0 9 756 304 333 0 0 chr9 22427533 22427617 -101648555 - RSINE1 SINE B4 0 165 82 9 756 426 248 95 58 chr9 22427948 22428085 -101648087 - B1F2 SINE Alu -7 142 1 9 756 511 275 18 0 chr9 22429968 22430077 -101646095 - PB1D10 SINE Alu -6 111 1 9 756 447 343 33 25 chr9 22430319 22430594 -101645578 + Lx9 LINE L1 7066 7342 -302 9 756 390 21 0 0 chr9 22430594 22430641 -101645531 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 756 1725 43 5 5 chr9 22430803 22431015 -101645157 - L1Md_F2 LINE L1 -1 6581 6370 9 756 909 215 30 10 chr9 22431068 22431270 -101644902 + B3 SINE B2 2 207 -9 9 756 213 132 0 0 chr9 22431270 22431308 -101644864 + (TCC)n Simple_repeat Simple_repeat 1 38 0 1 756 1183 299 94 23 chr9 22431316 22431964 -101644208 + L1_Rod LINE L1 4713 5406 -441 1 756 291 114 0 0 chr9 22432161 22432205 -101643967 + (CAG)n Simple_repeat Simple_repeat 1 44 0 1 756 269 318 0 26 chr9 22432471 22432584 -101643588 - MLT1A0 LTR MaLR 0 365 256 1 756 653 215 0 17 chr9 22434670 22434850 -101641322 + (TA)n Simple_repeat Simple_repeat 1 177 0 1 756 22 0 0 0 chr9 22435114 22435136 -101641036 + AT_rich Low_complexity Low_complexity 1 22 0 1 756 297 0 0 0 chr9 22435232 22435265 -101640907 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 756 1263 281 187 35 chr9 22435276 22436237 -101639935 - Lx9 LINE L1 -256 7388 6283 1 756 655 201 161 7 chr9 22436632 22436787 -101639385 - Lx7 LINE L1 -595 7101 6923 1 756 487 292 149 9 chr9 22437220 22437434 -101638738 - MLT1J LTR MaLR -17 495 252 1 756 335 256 25 0 chr9 22438165 22438286 -101637886 + (TA)n Simple_repeat Simple_repeat 2 125 0 1 756 1928 140 46 52 chr9 22438380 22438705 -101637467 - ORR1A3 LTR MaLR 0 326 4 1 756 229 223 58 96 chr9 22438705 22438799 -101637373 - MLT1A1 LTR MaLR -13 395 305 1 756 235 346 45 8 chr9 22439038 22439172 -101637000 + RMER12 LTR ERVK 707 845 -477 1 756 194 191 7 62 chr9 22439177 22439322 -101636850 + (TATATG)n Simple_repeat Simple_repeat 2 138 0 1 756 24 67 0 0 chr9 22439934 22439979 -101636193 + AT_rich Low_complexity Low_complexity 1 45 0 1 756 210 261 43 25 chr9 22440256 22440417 -101635755 + (TG)n Simple_repeat Simple_repeat 1 164 0 1 756 1368 188 5 0 chr9 22440641 22440865 -101635307 - URR1A DNA MER1_type -1 225 1 1 756 238 87 43 0 chr9 22441701 22441747 -101634425 + (TTTTTA)n Simple_repeat Simple_repeat 2 49 0 1 756 1209 266 112 21 chr9 22447444 22447881 -101628291 - Lx8 LINE L1 -41 7432 6956 1 756 275 179 59 15 chr9 22448005 22448073 -101628099 - L1M4 LINE L1 -429 5755 5685 1 756 522 46 0 0 chr9 22448371 22448436 -101627736 + (TTTCC)n Simple_repeat Simple_repeat 4 68 0 1 756 1157 56 14 0 chr9 22448438 22448580 -101627592 - B1_Mur4 SINE Alu -6 144 1 1 756 240 137 0 0 chr9 22448758 22448809 -101627363 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 756 242 250 82 14 chr9 22448812 22448885 -101627287 - ID4_ SINE ID -4 79 2 1 756 303 203 0 0 chr9 22449246 22449310 -101626862 + CT-rich Low_complexity Low_complexity 1 64 0 1 756 387 238 36 17 chr9 22449317 22449437 -101626735 - B1_Mur4 SINE Alu -5 145 1 1 756 22 0 0 0 chr9 22449480 22449502 -101626670 + AT_rich Low_complexity Low_complexity 1 22 0 1 756 1119 59 0 0 chr9 22449502 22449637 -101626535 + B1_Mus1 SINE Alu 1 135 -13 1 756 288 0 0 0 chr9 22449637 22449669 -101626503 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 756 571 264 6 89 chr9 22449719 22449898 -101626274 - RSINE1 SINE B4 0 165 2 1 756 198 279 113 68 chr9 22450161 22450338 -101625834 + MIRb SINE MIR 61 245 -23 1 756 23 0 0 0 chr9 22450918 22450941 -101625231 + AT_rich Low_complexity Low_complexity 1 23 0 1 756 645 237 59 0 chr9 22452753 22452922 -101623250 - B3A SINE B2 -19 179 1 1 756 545 170 43 135 chr9 22453469 22453632 -101622540 - B1_Mur2 SINE Alu 0 149 2 1 756 222 211 52 17 chr9 22454848 22454906 -101621266 - B1F2 SINE Alu -89 60 1 1 756 740 227 33 47 chr9 22454947 22455160 -101621012 - B3 SINE B2 -6 210 1 1 756 486 146 0 0 chr9 22455186 22455282 -101620890 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 756 2693 64 3 0 chr9 22455516 22455842 -101620330 - ORR1A2 LTR MaLR 0 327 1 1 756 918 207 41 23 chr9 22456154 22456378 -101619794 - B3 SINE B2 0 216 9 1 756 1760 10 0 0 chr9 22457775 22457968 -101618204 + B2_Mm1a SINE B2 1 193 0 1 756 1432 303 151 33 chr9 22458346 22459496 -101616676 - Lx9 LINE L1 -474 7170 5797 1 756 213 222 0 22 chr9 22459496 22459542 -101616630 + CT-rich Low_complexity Low_complexity 3 47 0 1 756 1037 184 8 55 chr9 22459978 22460214 -101615958 - URR1B DNA MER1_type 0 225 1 1 756 269 237 0 13 chr9 22460555 22460632 -101615540 - Lx7 LINE L1 -17 7679 7604 1 756 760 240 49 22 chr9 22460782 22461008 -101615164 - Lx7 LINE L1 -491 7205 6974 1 756 809 163 0 33 chr9 22461258 22461410 -101614762 - B1_Mur4 SINE Alu -2 148 2 1 756 24 0 0 0 chr9 22462024 22462048 -101614124 + AT_rich Low_complexity Low_complexity 1 24 0 1 756 217 253 156 10 chr9 22463059 22463155 -101613017 - PB1D7 SINE Alu -3 117 8 1 756 264 322 0 11 chr9 22463884 22463978 -101612194 - PB1D10 SINE Alu -6 111 19 1 756 474 82 23 12 chr9 22464007 22464093 -101612079 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 1 756 455 214 151 17 chr9 22464140 22464259 -101611913 - MTC LTR MaLR -2 417 283 1 756 634 244 36 6 chr9 22464269 22464434 -101611738 - MTC LTR MaLR -249 172 3 1 756 4355 42 2 6 chr9 22464628 22465153 -101611019 + L1Md_F2 LINE L1 6060 6582 0 1 756 204 125 0 0 chr9 22465997 22466029 -101610143 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 756 656 267 36 20 chr9 22466029 22466067 -101610105 - B3 SINE B2 -13 203 166 1 756 360 0 0 0 chr9 22466067 22466107 -101610065 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 756 656 267 36 20 chr9 22466107 22466263 -101609909 - B3 SINE B2 -51 165 6 1 756 228 309 60 0 chr9 22466946 22467030 -101609142 - ID4_ SINE ID -63 89 1 1 756 348 268 160 39 chr9 22467628 22467834 -101608338 - B4A SINE B4 -59 233 3 1 756 369 298 0 17 chr9 22468132 22468248 -101607924 + PB1D10 SINE Alu 3 116 -1 1 756 202 188 42 0 chr9 22468256 22468304 -101607868 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 1 756 369 0 0 0 chr9 22468712 22468753 -101607419 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 756 1119 84 0 0 chr9 22469940 22470083 -101606089 + B1_Mus2 SINE Alu 5 147 0 1 756 284 140 0 0 chr9 22470084 22470134 -101606038 + (A)n Simple_repeat Simple_repeat 1 50 0 1 756 427 248 130 15 chr9 22470780 22470911 -101605261 - B1F SINE Alu -3 146 1 1 756 461 278 30 8 chr9 22470966 22471100 -101605072 + B1F SINE Alu 12 148 -1 1 756 241 327 6 90 chr9 22471738 22471916 -101604256 - RSINE1 SINE B4 0 165 3 1 756 225 247 259 0 chr9 22471941 22472022 -101604150 - B4 SINE B4 -188 104 3 1 756 903 264 19 158 chr9 22472518 22472928 -101603244 + ORR1E LTR MaLR 1 353 -6 1 756 619 300 43 43 chr9 22476146 22476355 -101599817 - B3 SINE B2 0 216 8 1 756 283 294 198 18 chr9 22476398 22476620 -101599552 - B4A SINE B4 -29 263 2 1 756 38 61 0 0 chr9 22476755 22476821 -101599351 + AT_rich Low_complexity Low_complexity 1 66 0 1 756 243 317 12 12 chr9 22476825 22476908 -101599264 - ID4 SINE ID 0 83 1 1 756 298 286 100 8 chr9 22477495 22477615 -101598557 - RSINE1 SINE B4 -33 132 2 1 756 281 331 34 51 chr9 22477800 22477975 -101598197 - ID_B1 SINE B4 -4 220 49 1 756 25 51 0 0 chr9 22478002 22478041 -101598131 + AT_rich Low_complexity Low_complexity 1 39 0 1 756 317 247 93 0 chr9 22478069 22478166 -101598006 - Lx9 LINE L1 0 7644 7539 1 756 4991 231 58 53 chr9 22478208 22479276 -101596896 - Lx9 LINE L1 -184 7460 6346 1 756 684 69 39 44 chr9 22479276 22479457 -101596715 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 756 4991 231 58 53 chr9 22479457 22479863 -101596309 - Lx9 LINE L1 -1299 6345 5979 1 756 373 302 128 49 chr9 22479950 22480118 -101596054 - Lx9 LINE L1 -51 7593 7418 1 756 333 0 0 0 chr9 22480118 22480155 -101596017 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 756 373 302 128 49 chr9 22480155 22480313 -101595859 - Lx9 LINE L1 -227 7417 7241 1 756 237 341 22 22 chr9 22481135 22481315 -101594857 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 756 795 202 224 7 chr9 22481583 22481887 -101594285 + ORR1D1 LTR MaLR 1 370 -4 1 756 333 0 0 0 chr9 22481893 22481930 -101594242 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 756 469 0 33 0 chr9 22482067 22482128 -101594044 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 756 706 293 73 26 chr9 22484847 22485120 -101591052 - Lx8 LINE L1 -9 7464 7179 1 756 218 284 171 0 chr9 22485289 22485377 -101590795 - PB1D7 SINE Alu 0 120 18 1 756 560 323 53 42 chr9 22486234 22486499 -101589673 - MTEb LTR MaLR -110 269 2 1 756 449 233 0 6 chr9 22487107 22487271 -101588901 + (CA)n Simple_repeat Simple_repeat 2 164 0 1 756 309 206 0 0 chr9 22487315 22487407 -101588765 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 756 180 27 53 26 chr9 22487468 22487506 -101588666 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 1 756 1247 40 0 0 chr9 22487509 22487657 -101588515 - B1_Mus1 SINE Alu 0 148 1 1 756 323 229 14 0 chr9 22487744 22487814 -101588358 - ID4 SINE ID -10 73 3 1 756 592 206 0 0 chr9 22488749 22488856 -101587316 - B1_Mur2 SINE Alu -41 108 2 1 756 1997 100 124 0 chr9 22489369 22489660 -101586512 + ORR1A2 LTR MaLR 1 327 0 1 756 406 260 0 28 chr9 22489933 22490115 -101586057 + C-rich Low_complexity Low_complexity 4 180 0 1 756 237 313 83 72 chr9 22492189 22492465 -101583707 + B4 SINE B4 3 281 -11 1 756 303 242 85 43 chr9 22492490 22492654 -101583518 - RLTR21 LTR ERVK -316 1256 1086 1 756 309 299 62 78 chr9 22492789 22492820 -101583352 - B2_Mm1a SINE B2 -4 189 161 1 756 360 64 0 0 chr9 22492820 22492867 -101583305 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 756 583 277 32 1 chr9 22492867 22493027 -101583145 - B3A SINE B2 -34 164 1 1 756 248 209 90 0 chr9 22493096 22493163 -101583009 + L1MB2 LINE L1 6073 6145 -26 1 756 328 242 185 5 chr9 22493597 22493792 -101582380 - Charlie5 DNA MER1_type -23 2601 2372 1 756 321 26 0 0 chr9 22493890 22493928 -101582244 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1 756 470 289 58 84 chr9 22493940 22493974 -101582198 - RSINE1 SINE B4 -13 152 131 1 756 1002 96 116 29 chr9 22493974 22494135 -101582037 + B2_Mm2 SINE B2 1 177 -18 1 756 189 0 0 0 chr9 22494135 22494156 -101582016 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 756 470 289 58 84 chr9 22494166 22494286 -101581886 - RSINE1 SINE B4 -35 130 2 1 756 495 0 0 0 chr9 22495740 22495795 -101580377 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 756 216 0 0 0 chr9 22495843 22495867 -101580305 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 756 366 129 0 0 chr9 22495901 22495963 -101580209 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 756 288 0 0 0 chr9 22496129 22496161 -101580011 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 756 405 255 39 49 chr9 22496813 22496955 -101579217 - B4 SINE B4 -44 248 104 1 756 649 217 125 0 chr9 22497146 22497298 -101578874 + B3 SINE B2 42 212 -4 1 756 3119 50 40 0 chr9 22497304 22497683 -101578489 - MTA_Mm LTR MaLR 0 396 3 1 756 566 315 78 65 chr9 22497719 22498273 -101577899 - L1ME1 LINE L1 -8 6171 5611 1 756 443 305 107 84 chr9 22498538 22498885 -101577287 - ORR1E LTR MaLR -2 357 3 1 756 596 281 42 29 chr9 22499203 22499441 -101576731 - L1MB1 LINE L1 -6 6162 5922 1 756 281 254 68 89 chr9 22499593 22499833 -101576339 - L1MB1 LINE L1 -568 5600 5380 1 756 2540 161 59 20 chr9 22500058 22500131 -101576041 + RLTR11A2 LTR ERVK 1 82 -445 1 756 288 0 0 0 chr9 22500131 22500163 -101576009 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 756 2540 161 59 20 chr9 22500163 22500596 -101575576 + RLTR11A2 LTR ERVK 83 526 -1 1 756 1147 261 44 19 chr9 22502401 22502761 -101573411 + ORR1D2 LTR MaLR 1 369 -1 3 756 5278 48 6 0 chr9 22503946 22504593 -101571579 + L1_Mm LINE L1 5106 5756 -127 4 756 2578 230 48 8 chr9 22504594 22504684 -101571488 - L1_Rod LINE L1 -6363 809 719 5 756 1975 177 37 19 chr9 22504684 22505059 -101571113 - ORR1C2 LTR MaLR 0 384 3 6 756 2578 230 48 8 chr9 22505059 22505595 -101570577 - L1_Rod LINE L1 -6454 718 158 5 756 215 31 31 0 chr9 22505952 22505984 -101570188 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 7 756 227 83 56 0 chr9 22506143 22506179 -101569993 - L1M5 LINE L1 -650 5474 5437 8 756 285 29 0 0 chr9 22507427 22507461 -101568711 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 756 360 64 0 0 chr9 22507461 22507508 -101568664 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 756 613 326 106 32 chr9 22507529 22507906 -101568266 - Lx8 LINE L1 -276 7197 6793 1 756 387 254 73 16 chr9 22507912 22508036 -101568136 + B1_Mur1 SINE Alu 19 149 0 1 756 993 221 14 9 chr9 22508061 22508276 -101567896 + B3 SINE B2 1 216 0 1 756 380 292 26 0 chr9 22508334 22508447 -101567725 - Lx8 LINE L1 -767 6706 6591 1 756 975 109 0 0 chr9 22509505 22509652 -101566520 + (TG)n Simple_repeat Simple_repeat 1 147 0 1 756 253 321 35 18 chr9 22509838 22509952 -101566220 - PB1D10 SINE Alu 0 117 2 1 756 521 163 23 15 chr9 22511517 22511648 -101564524 + CT-rich Low_complexity Low_complexity 3 134 0 1 756 180 308 115 0 chr9 22513206 22513336 -101562836 + MIRb SINE MIR 8 152 -116 1 756 216 0 0 0 chr9 22513478 22513502 -101562670 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 756 30 27 0 0 chr9 22515810 22515847 -101560325 + AT_rich Low_complexity Low_complexity 1 37 0 1 756 393 296 107 36 chr9 22515877 22516045 -101560127 + B3A SINE B2 2 181 -17 2 756 971 51 22 7 chr9 22517724 22517863 -101558309 - L1Md_F2 LINE L1 -3 6579 6439 2 756 419 92 15 0 chr9 22518295 22518360 -101557812 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 756 535 175 40 0 chr9 22518371 22518497 -101557675 + Lx9 LINE L1 7514 7644 0 2 756 299 331 108 16 chr9 22518889 22519018 -101557154 + B4A SINE B4 7 147 -145 2 756 3345 48 0 10 chr9 22519018 22519418 -101556754 - MTA_Mm LTR MaLR 0 396 1 2 756 516 256 17 17 chr9 22519429 22519548 -101556624 + B4A SINE B4 107 225 -67 2 756 308 263 0 17 chr9 22519550 22519670 -101556502 + (CATA)n Simple_repeat Simple_repeat 3 120 0 2 756 180 270 31 16 chr9 22520890 22520954 -101555218 - MIRb SINE MIR -8 260 196 2 756 297 191 48 0 chr9 22521151 22521214 -101554958 + Charlie14a DNA MER1_type 5 70 -1094 2 756 228 217 0 16 chr9 22521295 22521356 -101554816 - MER103 DNA DNA -53 113 54 3 756 252 0 0 0 chr9 22521425 22521453 -101554719 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 756 640 332 113 36 chr9 22521521 22521971 -101554201 + LTR40a LTR ERVL 34 518 -1 3 756 183 80 0 0 chr9 22522462 22522487 -101553685 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 756 4495 14 2 0 chr9 22523314 22523806 -101552366 - MT2_Mm LTR ERVL 0 493 1 3 756 321 0 0 0 chr9 22523806 22523844 -101552328 - MERVL-int LTR ERVL 0 5485 5448 3 756 362 167 46 35 chr9 22523844 22523931 -101552241 - ORR1A3-int LTR MaLR -1323 640 553 3 756 48436 15 6 0 chr9 22523931 22529257 -101546915 - MERVL-int LTR ERVL -125 5360 1 3 756 4495 14 2 0 chr9 22529257 22529749 -101546423 - MT2_Mm LTR ERVL 0 493 1 3 756 38798 30 0 0 chr9 22529833 22536279 -101539893 - L1Md_T LINE L1 0 6585 43 3 756 21 71 0 0 chr9 22536911 22536953 -101539219 + AT_rich Low_complexity Low_complexity 1 42 0 3 756 236 293 134 0 chr9 22537058 22537140 -101539032 + B4A SINE B4 1 93 -199 3 756 530 302 24 48 chr9 22537141 22537286 -101538886 + B3A SINE B2 1 143 -55 3 756 3823 155 48 12 chr9 22537286 22537953 -101538219 + RLTR17 LTR ERVK 1 691 -1 4 756 530 248 65 69 chr9 22537953 22538024 -101538148 + B3A SINE B2 142 216 0 3 756 288 0 0 0 chr9 22538026 22538058 -101538114 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 756 550 282 21 14 chr9 22538084 22538228 -101537944 + B4A SINE B4 125 269 -23 3 756 212 77 26 0 chr9 22538230 22538269 -101537903 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 756 379 244 35 0 chr9 22538269 22538355 -101537817 - PB1D7 SINE Alu -11 109 21 4 756 237 33 0 0 chr9 22540705 22540735 -101535437 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 756 2478 302 86 30 chr9 22540747 22541736 -101534436 - Lx9 LINE L1 -187 7457 6414 4 756 254 352 68 12 chr9 22541810 22541971 -101534201 - L1M5 LINE L1 -402 5722 5553 4 757 3559 65 2 0 chr9 22545038 22545483 -101530689 - L1_Mus2 LINE L1 0 6566 6121 4 757 25 0 0 0 chr9 22546160 22546185 -101529987 + AT_rich Low_complexity Low_complexity 1 25 0 4 757 359 332 84 9 chr9 22546293 22546506 -101529666 + L1M5 LINE L1 4955 5183 -963 4 757 1527 59 0 5 chr9 22547077 22547265 -101528907 + B2_Mm2 SINE B2 1 187 -8 5 757 892 149 0 18 chr9 22548048 22548219 -101527953 + CT-rich Low_complexity Low_complexity 3 170 0 5 757 819 262 103 56 chr9 22549415 22549700 -101526472 - Lx8 LINE L1 -8 7465 7162 5 757 1944 121 79 31 chr9 22549700 22550091 -101526081 + RMER17C LTR ERVK 1 410 0 5 757 819 262 103 56 chr9 22550091 22550164 -101526008 - Lx8 LINE L1 -312 7161 7091 5 757 1888 162 26 16 chr9 22550171 22550554 -101525618 + RMER20A LTR ERVK 1 387 -129 5 757 430 267 117 26 chr9 22550568 22550722 -101525450 - Lx8 LINE L1 -367 7106 6939 5 757 201 94 0 0 chr9 22550728 22550760 -101525412 + (AGCTG)n Simple_repeat Simple_repeat 3 34 0 5 757 714 286 33 5 chr9 22550769 22550983 -101525189 - Lx8 LINE L1 -594 6879 6660 5 757 1186 56 0 7 chr9 22551182 22551327 -101524845 - B1_Mm SINE Alu -2 145 2 5 757 279 278 158 72 chr9 22552631 22553004 -101523168 + RMER10A LTR ERVL 19 423 -19 5 757 297 0 0 0 chr9 22553619 22553652 -101522520 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 757 477 0 0 0 chr9 22553652 22553704 -101522468 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 757 571 289 59 10 chr9 22553724 22553927 -101522245 + Tigger9a DNA Tigger 436 648 -84 6 757 1335 254 25 65 chr9 22554209 22554688 -101521484 - MT2A LTR ERVL -73 460 1 6 757 207 0 0 0 chr9 22556352 22556375 -101519797 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 757 1313 273 80 28 chr9 22556909 22557804 -101518368 - L1M3 LINE L1 -579 5592 4636 6 757 287 303 15 103 chr9 22558183 22558378 -101517794 - MER20 DNA MER1_type -4 215 38 6 757 246 247 86 0 chr9 22559569 22559663 -101516509 + MIRc SINE MIR 23 128 -148 6 757 349 299 78 47 chr9 22562190 22562241 -101513931 + MER20 DNA MER1_type 17 71 -148 6 757 372 43 0 0 chr9 22562241 22562287 -101513885 + (TTA)n Simple_repeat Simple_repeat 3 48 0 6 757 349 299 78 47 chr9 22562287 22562428 -101513744 + MER20 DNA MER1_type 72 215 -4 6 757 301 325 25 0 chr9 22562746 22562866 -101513306 - L1MC3 LINE L1 -954 6831 6709 6 757 261 0 0 0 chr9 22563622 22563651 -101512521 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 6 757 742 299 79 34 chr9 22564173 22564589 -101511583 - L1MB5 LINE L1 -33 6141 5707 7 757 6114 58 27 1 chr9 22566822 22567595 -101508577 - L1_Mus2 LINE L1 0 6566 5774 7 757 291 237 0 0 chr9 22567616 22567675 -101508497 + ID4_ SINE ID 1 59 -24 7 757 314 327 64 27 chr9 22568561 22568781 -101507391 - L1MA9 LINE L1 -59 6253 6026 7 757 450 0 0 0 chr9 22570533 22570583 -101505589 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 757 243 0 0 0 chr9 22571374 22571401 -101504771 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 757 583 281 29 0 chr9 22571410 22571549 -101504623 - RSINE1 SINE B4 -13 152 10 7 757 934 166 133 20 chr9 22572012 22572215 -101503957 - URR1A DNA MER1_type 0 226 1 7 757 348 256 0 12 chr9 22573926 22574009 -101502163 - PB1D10 SINE Alu -7 110 29 7 757 461 240 68 55 chr9 22575316 22575436 -101500736 - MER5A DNA MER1_type -21 168 41 7 757 3362 46 2 0 chr9 22575436 22575831 -101500341 + MTA_Mm LTR MaLR 1 396 0 8 757 461 240 68 55 chr9 22575831 22575873 -101500299 - MER5A DNA MER1_type -149 40 5 7 757 2207 54 32 0 chr9 22575913 22576192 -101499980 + L1_Mus2 LINE L1 6279 6566 0 8 757 282 330 48 0 chr9 22576299 22576402 -101499770 - B1F SINE Alu 0 149 42 8 757 234 0 0 0 chr9 22576420 22576446 -101499726 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 757 305 100 20 0 chr9 22577142 22577192 -101498980 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 8 757 488 123 0 0 chr9 22577206 22577279 -101498893 - U4 snRNA snRNA -72 73 1 8 757 1144 63 0 28 chr9 22577291 22577471 -101498701 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 8 757 926 249 58 75 chr9 22577548 22577909 -101498263 + ORR1D2 LTR MaLR 1 355 -15 8 757 339 25 0 0 chr9 22578697 22578737 -101497435 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 8 757 875 216 10 10 chr9 22578737 22578929 -101497243 - Lx5 LINE L1 -18 7032 6841 8 757 359 222 69 20 chr9 22579505 22579606 -101496566 + ID_B1 SINE B4 118 223 -1 9 757 359 282 40 99 chr9 22579809 22580010 -101496162 - Lx8 LINE L1 -6 7467 7279 9 757 22 0 0 0 chr9 22580713 22580735 -101495437 + AT_rich Low_complexity Low_complexity 1 22 0 9 757 399 330 94 25 chr9 22580788 22580990 -101495182 - B4A SINE B4 -14 278 63 9 757 505 267 61 84 chr9 22581152 22581414 -101494758 + ORR1E LTR MaLR 3 258 -101 9 757 700 219 5 83 chr9 22582143 22582347 -101493825 - RLTR11B LTR ERVK -172 281 94 9 757 368 113 0 54 chr9 22582707 22582753 -101493419 + L1_Mm LINE L1 5541 5585 -298 9 757 7938 51 13 0 chr9 22582753 22583733 -101492439 + L1Md_F2 LINE L1 5587 6579 -3 9 757 273 271 0 14 chr9 22583995 22584066 -101492106 - L4 LINE RTE -313 1716 1647 9 757 742 171 0 0 chr9 22586494 22586617 -101489555 - Lx9 LINE L1 -791 6853 6731 9 757 351 284 0 0 chr9 22586698 22586928 -101489244 + (TG)n Simple_repeat Simple_repeat 1 230 0 1 757 234 91 0 0 chr9 22588513 22588546 -101487626 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 757 213 362 46 84 chr9 22588629 22588867 -101487305 + MIRb SINE MIR 10 238 -30 1 757 21 0 0 0 chr9 22588900 22588921 -101487251 + AT_rich Low_complexity Low_complexity 1 21 0 1 757 22 0 0 0 chr9 22589212 22589234 -101486938 + AT_rich Low_complexity Low_complexity 1 22 0 1 757 425 281 22 33 chr9 22589415 22589574 -101486598 + MER20 DNA MER1_type 1 155 -628 1 757 225 296 0 14 chr9 22590327 22590399 -101485773 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 757 26 0 0 0 chr9 22590870 22590896 -101485276 + AT_rich Low_complexity Low_complexity 1 26 0 1 757 651 183 21 7 chr9 22591720 22591863 -101484309 + B1_Mm SINE Alu 2 146 -1 1 757 848 196 40 23 chr9 22592274 22592451 -101483721 - B3A SINE B2 -17 181 2 1 757 274 259 158 33 chr9 22593026 22593146 -101483026 - MTEa LTR MaLR -8 371 237 1 757 436 301 7 13 chr9 22593209 22593364 -101482808 + MIR SINE MIR 108 261 -1 1 757 591 281 126 27 chr9 22595331 22595624 -101480548 - MER63D DNA AcHobo -702 359 38 1 757 387 259 115 47 chr9 22595849 22596084 -101480088 - MER45B DNA Tip100 -26 1014 764 1 757 180 341 10 99 chr9 22596388 22596489 -101479683 + L2b LINE L2 3259 3350 -25 1 757 1393 177 41 189 chr9 22599343 22599569 -101476603 - ORR1D1 LTR MaLR 0 374 227 1 757 207 0 0 0 chr9 22599569 22599592 -101476580 + (CAGG)n Simple_repeat Simple_repeat 2 24 0 1 757 1393 177 41 189 chr9 22599592 22599804 -101476368 - ORR1D1 LTR MaLR -148 226 1 1 757 366 363 0 20 chr9 22600469 22600618 -101475554 + RSINE1 SINE B4 1 146 -19 1 757 868 107 59 0 chr9 22600631 22600800 -101475372 + (CATA)n Simple_repeat Simple_repeat 2 180 0 1 757 268 220 0 0 chr9 22600800 22600850 -101475322 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 757 545 258 108 34 chr9 22600903 22601172 -101475000 + MER44A DNA MER2_type 23 311 -28 1 757 655 165 8 8 chr9 22602711 22602845 -101473327 + CT-rich Low_complexity Low_complexity 4 137 0 1 757 432 37 0 0 chr9 22603473 22603527 -101472645 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 757 277 202 11 87 chr9 22604450 22604542 -101471630 + MTEb LTR MaLR 286 370 -9 1 757 5758 32 0 0 chr9 22605633 22606294 -101469878 - L1Md_T LINE L1 0 6582 5922 1 757 963 42 0 0 chr9 22606295 22606413 -101469759 + L1Md_T LINE L1 5832 5949 -633 1 757 1026 114 0 32 chr9 22607206 22607360 -101468812 - B1_Mur3 SINE Alu 0 149 1 1 757 2114 129 3 30 chr9 22607436 22607772 -101468400 - ORR1A4 LTR MaLR 0 327 1 1 757 9950 131 19 110 chr9 22607772 22609931 -101466241 - ORR1A4-int LTR MaLR 0 1963 1 1 757 2337 125 0 0 chr9 22609931 22610260 -101465912 - ORR1A4 LTR MaLR 0 329 1 1 757 36 77 0 0 chr9 22610371 22610449 -101465723 + AT_rich Low_complexity Low_complexity 1 78 0 1 757 243 320 13 0 chr9 22611693 22611768 -101464404 + ID4_ SINE ID 1 76 -7 1 757 334 309 49 54 chr9 22611984 22612189 -101463983 - Kanga1 DNA Tc2 -43 1702 1499 1 757 283 256 44 44 chr9 22612329 22612419 -101463753 - Kanga1 DNA Tc2 -1021 724 635 1 757 25 0 0 0 chr9 22612715 22612740 -101463432 + AT_rich Low_complexity Low_complexity 1 25 0 1 757 240 35 0 0 chr9 22612744 22612773 -101463399 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 757 908 144 139 0 chr9 22614783 22614970 -101461202 - URR1A DNA MER1_type -13 213 1 1 757 272 347 24 24 chr9 22615048 22615172 -101461000 - RMER4A LTR ERVK -337 129 6 1 757 1146 133 159 0 chr9 22617978 22618173 -101457999 + URR1A DNA MER1_type 1 226 0 1 757 820 272 87 19 chr9 22618677 22618999 -101457173 + MTE2b LTR MaLR 28 371 -8 1 757 222 250 31 0 chr9 22620252 22620316 -101455856 - MIR3 SINE MIR -35 173 108 1 757 1320 185 36 57 chr9 22620569 22620902 -101455270 - Lx9 LINE L1 -1 7643 7318 1 757 288 0 0 0 chr9 22620902 22620934 -101455238 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1 757 728 216 200 83 chr9 22620941 22621481 -101454691 - Lx9 LINE L1 -1 7643 7041 1 757 470 250 26 65 chr9 22621475 22621629 -101454543 + Lx9 LINE L1 5769 5916 -1728 1 757 183 147 25 51 chr9 22621892 22621971 -101454201 + T-rich Low_complexity Low_complexity 1 77 0 1 757 1251 34 0 13 chr9 22621972 22622122 -101454050 - B1_Mus1 SINE Alu 0 148 1 1 757 1096 187 25 0 chr9 22623059 22623262 -101452910 - B3 SINE B2 -5 211 4 1 757 25 0 0 0 chr9 22623589 22623614 -101452558 + AT_rich Low_complexity Low_complexity 1 25 0 1 757 953 183 225 12 chr9 22623662 22623999 -101452173 - MTD LTR MaLR 0 421 13 1 757 1429 116 0 5 chr9 22624248 22624465 -101451707 + Lx LINE L1 6430 6645 -9 1 757 1622 196 70 24 chr9 22624470 22624842 -101451330 + Lx2B LINE L1 6610 6998 -2 1 757 199 360 39 39 chr9 22625331 22625487 -101450685 + L3b LINE CR1 279 434 -48 1 757 1440 152 159 3 chr9 22625944 22626234 -101449938 - Lx4A LINE L1 -2 7056 6722 1 757 261 0 0 0 chr9 22627816 22627845 -101448327 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 757 213 39 0 0 chr9 22629373 22629399 -101446773 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 757 239 309 38 51 chr9 22629900 22630057 -101446115 - L2 LINE L2 -1144 2275 2121 1 757 477 151 0 0 chr9 22632619 22632705 -101443467 + (TATG)n Simple_repeat Simple_repeat 1 86 0 1 757 3525 111 81 20 chr9 22635362 22636054 -101440118 + RMER17A LTR ERVK 3 736 -15 1 757 268 266 35 26 chr9 22636578 22636694 -101439478 - L3b LINE CR1 -173 309 193 1 757 668 131 412 0 chr9 22637273 22637433 -101438739 + URR1A DNA MER1_type 1 226 0 1 757 1294 279 108 40 chr9 22640180 22640980 -101435192 - Lx9 LINE L1 -20 7624 6770 1 757 216 167 167 0 chr9 22642191 22642239 -101433933 - B1F SINE Alu -72 77 22 1 757 412 263 83 58 chr9 22643005 22643247 -101432925 + L1MC4a LINE L1 5955 6202 -1680 1 757 251 189 72 21 chr9 22643506 22643603 -101432569 + (TATATG)n Simple_repeat Simple_repeat 3 104 0 1 757 281 297 99 28 chr9 22643611 22643753 -101432419 + L1MC4a LINE L1 6630 6781 -1101 1 757 1304 283 103 15 chr9 22643922 22644463 -101431709 + L1MC4a LINE L1 6785 7373 -509 1 757 299 310 68 28 chr9 22644658 22644834 -101431338 - L1ME2z LINE L1 -514 5930 5748 1 757 254 231 99 88 chr9 22645173 22645272 -101430900 - L1ME2z LINE L1 -100 6344 6240 1 757 1162 82 0 0 chr9 22645272 22645418 -101430754 + B1_Mus2 SINE Alu 2 147 0 1 757 254 231 99 88 chr9 22645418 22645489 -101430683 - L1ME2z LINE L1 -205 6239 6172 1 757 384 22 0 0 chr9 22645817 22645862 -101430310 + (CATA)n Simple_repeat Simple_repeat 4 48 0 1 757 495 276 65 115 chr9 22646109 22646387 -101429785 - B4 SINE B4 -27 265 2 1 757 21737 17 0 0 chr9 22646697 22649168 -101427004 + L1Md_T LINE L1 3116 5586 -297 1 757 8709 30 0 0 chr9 22649168 22650164 -101426008 + L1Md_T LINE L1 5587 6582 0 1 757 892 245 25 0 chr9 22651341 22651545 -101424627 - B3 SINE B2 -7 209 1 1 757 363 44 0 0 chr9 22652653 22652698 -101423474 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 757 305 75 0 19 chr9 22652700 22652754 -101423418 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 1 757 534 152 0 0 chr9 22654356 22654448 -101421724 + GA-rich Low_complexity Low_complexity 1 92 0 1 757 2611 269 118 29 chr9 22654823 22655716 -101420456 + Lx8 LINE L1 6374 7345 -128 1 757 305 250 42 33 chr9 22655808 22655928 -101420244 + Lx8 LINE L1 7353 7473 0 1 757 297 0 0 0 chr9 22655971 22656004 -101420168 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 757 405 0 0 0 chr9 22656004 22656048 -101420124 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 757 853 126 0 0 chr9 22656049 22656176 -101419996 - B1_Mur4 SINE Alu -8 142 16 1 757 613 296 37 0 chr9 22656672 22656834 -101419338 - B3A SINE B2 -30 168 1 1 757 1040 268 21 39 chr9 22657173 22657503 -101418669 - MTD LTR MaLR -95 324 1 1 757 1985 235 54 57 chr9 22657505 22658154 -101418018 - MTD-int LTR MaLR -2 1256 610 1 757 305 257 73 0 chr9 22658162 22658271 -101417901 + L1_Rod LINE L1 2249 2365 -3482 1 757 15703 100 14 22 chr9 22658278 22661490 -101414682 + L1VL1 LINE L1 192 3377 -321 1 757 3295 38 5 0 chr9 22661490 22661913 -101414259 - RLTR13B1 LTR ERVK 0 893 469 1 757 7426 93 22 2 chr9 22661913 22663112 -101413060 + L1_Mus3 LINE L1 5405 6623 -15 1 757 959 79 8 0 chr9 22663134 22663261 -101412911 + L1_Mur2 LINE L1 5099 5226 -651 1 757 682 125 0 0 chr9 22663253 22663357 -101412815 - L1_Mur2 LINE L1 -1133 4744 4641 1 757 1361 278 96 8 chr9 22663361 22663392 -101412780 + Lx8 LINE L1 2332 2362 -3518 1 757 1689 31 0 0 chr9 22663392 22663583 -101412589 + B2_Mm1a SINE B2 1 191 -2 1 757 1361 278 96 8 chr9 22663583 22664142 -101412030 + Lx8 LINE L1 2363 2974 -2906 1 757 758 89 9 0 chr9 22664145 22664257 -101411915 + (GAAAA)n Simple_repeat Simple_repeat 2 114 0 1 757 3535 280 77 21 chr9 22664345 22665722 -101410450 + Lx8 LINE L1 4350 5845 -2150 1 757 1023 249 18 43 chr9 22665727 22666004 -101410168 + Lx8 LINE L1 6269 6538 -935 1 757 681 318 198 28 chr9 22667566 22668387 -101407785 - L2a LINE L2 -43 3383 2424 1 757 3487 97 34 22 chr9 22668411 22668907 -101407265 - Lx2A LINE L1 -6 7002 6501 1 757 192 77 0 0 chr9 22668927 22668953 -101407219 + (T)n Simple_repeat Simple_repeat 1 26 0 1 757 413 344 33 37 chr9 22669397 22669611 -101406561 - MIR SINE MIR -28 240 31 1 757 1869 316 48 13 chr9 22669895 22670820 -101405352 - L1_Mur3 LINE L1 -317 5563 4607 1 757 477 301 3 41 chr9 22670816 22671005 -101405167 + L1_Rod LINE L1 5523 5761 -551 1 757 42 0 0 0 chr9 22671038 22671080 -101405092 + AT_rich Low_complexity Low_complexity 1 42 0 1 757 331 343 0 0 chr9 22671276 22671419 -101404753 + L1_Rod LINE L1 5690 5832 -15 1 757 402 235 0 0 chr9 22671481 22671583 -101404589 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 757 222 171 0 0 chr9 22671685 22671726 -101404446 + G-rich Low_complexity Low_complexity 1 41 0 1 757 1211 138 138 0 chr9 22671884 22672079 -101404093 + URR1A DNA MER1_type 5 226 0 1 757 602 162 0 8 chr9 22672736 22672854 -101403318 + (CAT)n Simple_repeat Simple_repeat 1 117 0 1 757 200 300 62 12 chr9 22673142 22673223 -101402949 - MIR SINE MIR 0 262 178 1 757 323 261 0 0 chr9 22673269 22673334 -101402838 + B4A SINE B4 82 146 -146 1 757 477 238 0 65 chr9 22673280 22673342 -101402830 + PB1D10 SINE Alu 8 68 -49 1 757 1348 47 64 0 chr9 22673342 22673514 -101402658 + L1_Mus3 LINE L1 6453 6635 -3 2 757 477 238 0 65 chr9 22673514 22673559 -101402613 + PB1D10 SINE Alu 69 108 -9 1 757 1200 120 0 0 chr9 22673560 22673824 -101402348 + (CA)n Simple_repeat Simple_repeat 1 264 0 2 757 321 89 0 0 chr9 22673831 22673876 -101402296 + (CATA)n Simple_repeat Simple_repeat 4 48 0 2 757 188 67 0 32 chr9 22675364 22675395 -101400777 + (TTC)n Simple_repeat Simple_repeat 2 31 0 2 758 509 257 0 42 chr9 22676185 22676303 -101399869 + PB1D10 SINE Alu 3 115 -2 2 758 250 105 0 0 chr9 22677203 22677241 -101398931 - B1_Mus1 SINE Alu -79 69 32 2 758 848 340 39 65 chr9 22677466 22677926 -101398246 - Tigger7 DNA MER2_type -2041 450 3 2 758 232 308 15 0 chr9 22677956 22678021 -101398151 + GA-rich Low_complexity Low_complexity 2 67 0 2 758 893 60 0 0 chr9 22678598 22678714 -101397458 + B1_Mm SINE Alu 31 146 -1 2 758 263 107 0 35 chr9 22678714 22678772 -101397400 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 2 758 616 291 142 22 chr9 22679242 22679565 -101396607 + L1MC3 LINE L1 7416 7777 -8 2 758 560 274 91 38 chr9 22679761 22679947 -101396225 + MER58A DNA MER1_type 1 196 -28 2 758 238 244 54 65 chr9 22680268 22680360 -101395812 + MER63D DNA AcHobo 249 339 -722 2 758 303 71 0 0 chr9 22680411 22680453 -101395719 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 758 252 241 0 0 chr9 22680519 22680598 -101395574 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 758 378 0 0 0 chr9 22680854 22680896 -101395276 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 2 758 25 31 0 0 chr9 22680954 22680986 -101395186 + AT_rich Low_complexity Low_complexity 1 32 0 2 758 390 128 80 23 chr9 22681050 22681138 -101395034 + Lx3_Mus LINE L1 6913 7005 -4 2 758 263 306 28 9 chr9 22681138 22681247 -101394925 - Lx7 LINE L1 -21 7675 7565 2 758 614 25 25 0 chr9 22681261 22681340 -101394832 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 2 758 263 93 23 0 chr9 22681358 22681401 -101394771 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 2 758 204 67 0 0 chr9 22681504 22681534 -101394638 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 758 765 174 69 42 chr9 22682643 22682787 -101393385 + B1_Mus1 SINE Alu 1 148 0 2 758 273 148 11 22 chr9 22682801 22682829 -101393343 + A-rich Low_complexity Low_complexity 2 28 0 2 758 1279 41 0 0 chr9 22682829 22682975 -101393197 + B1_Mm SINE Alu 2 147 0 2 758 273 148 11 22 chr9 22682975 22683036 -101393136 + A-rich Low_complexity Low_complexity 29 89 0 2 758 329 267 67 0 chr9 22683621 22683711 -101392461 - Tigger5 DNA MER2_type -16 2390 2295 2 758 362 287 39 137 chr9 22683858 22684040 -101392132 + RSINE1 SINE B4 2 165 0 2 758 288 0 0 0 chr9 22684542 22684574 -101391598 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 758 5677 74 19 20 chr9 22685180 22685886 -101390286 - RLTR13C2 LTR ERVK 0 808 103 2 758 3441 77 52 133 chr9 22685886 22686443 -101389729 - RLTR1B LTR ERV1 0 512 1 2 758 5677 74 19 20 chr9 22686443 22686545 -101389627 - RLTR13C2 LTR ERVK -706 102 1 2 758 272 348 121 50 chr9 22687051 22687290 -101388882 + LTR79 LTR ERVL 20 275 -252 2 758 229 220 0 0 chr9 22687448 22687498 -101388674 + T-rich Low_complexity Low_complexity 1 50 0 2 758 2194 259 38 47 chr9 22687516 22688351 -101387821 + L1_Rod LINE L1 3798 4625 -1222 2 758 191 283 0 0 chr9 22688539 22688585 -101387587 + MIRm SINE MIR 110 155 -121 2 758 6821 86 87 10 chr9 22689018 22690757 -101385415 - L1VL2 LINE L1 -1608 2007 123 2 758 198 287 153 16 chr9 22690759 22690883 -101385289 + MIRb SINE MIR 128 268 0 2 758 1805 89 8 0 chr9 22693115 22693362 -101382810 + ORR1A2 LTR MaLR 79 327 0 2 758 396 0 0 0 chr9 22693686 22693730 -101382442 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 758 315 258 123 1 chr9 22693746 22693839 -101382333 - PB1D10 SINE Alu -21 128 25 2 758 497 268 72 7 chr9 22694418 22694557 -101381615 - B1F2 SINE Alu -1 148 1 2 758 574 316 47 43 chr9 22694615 22694986 -101381186 + RLTR16 LTR ERVK 1 421 -271 2 758 6037 41 1 1 chr9 22695142 22695829 -101380343 - L1Md_F2 LINE L1 0 6582 5896 2 758 17750 69 6 7 chr9 22695851 22698700 -101377472 - L1Md_A LINE L1 -2411 3472 631 2 758 438 281 79 37 chr9 22698747 22698961 -101377211 - Lx8 LINE L1 -29 7444 7222 2 758 1311 211 109 13 chr9 22698977 22699289 -101376883 - Lx8 LINE L1 -511 6962 6621 2 758 2015 291 118 46 chr9 22699364 22699616 -101376556 - L1_Mur3 LINE L1 -2751 3129 2848 2 758 426 39 0 0 chr9 22699616 22699668 -101376504 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 2 758 2015 291 118 46 chr9 22699668 22701181 -101374991 - L1_Mur3 LINE L1 -3033 2847 1237 2 758 653 246 130 5 chr9 22701190 22701382 -101374790 - B3 SINE B2 0 216 1 2 758 668 85 8 7 chr9 22701404 22701521 -101374651 - L1_Mus1 LINE L1 0 6582 6466 2 758 331 301 8 34 chr9 22701526 22701643 -101374529 - Lx8 LINE L1 -313 7160 7047 2 758 243 0 0 0 chr9 22701650 22701677 -101374495 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 758 42195 7 0 1 chr9 22701684 22708633 -101367539 - L1Md_A LINE L1 0 6582 1 2 758 1088 329 35 10 chr9 22708662 22709061 -101367111 - Lx8 LINE L1 -451 7022 6614 2 758 4388 222 59 37 chr9 22709125 22709239 -101366933 - RMER1A Other Other -4 1026 873 2 758 465 19 0 0 chr9 22709239 22709293 -101366879 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 758 4388 222 59 37 chr9 22709293 22710182 -101365990 - RMER1A Other Other -158 872 1 2 758 1903 238 17 65 chr9 22710184 22710768 -101365404 - RMER1B Other Other -560 506 7 2 758 630 145 38 0 chr9 22712304 22712435 -101363737 + CT-rich Low_complexity Low_complexity 4 139 0 2 758 733 150 127 86 chr9 22712436 22712633 -101363539 - RMER1B Other Other 0 1066 862 2 758 25 0 0 0 chr9 22712718 22712743 -101363429 + AT_rich Low_complexity Low_complexity 1 25 0 2 758 682 306 137 39 chr9 22712856 22713506 -101362666 - Arthur1 DNA Tip100 -86 3861 3148 2 758 477 301 56 9 chr9 22713521 22713736 -101362436 + L1_Mur3 LINE L1 606 830 -6898 2 758 1022 253 14 29 chr9 22714096 22714377 -101361795 + L1_Mur3 LINE L1 847 1123 -6605 2 758 28763 111 33 11 chr9 22714426 22720100 -101356072 + L1_Mus3 LINE L1 833 6638 0 2 758 6632 180 34 75 chr9 22720152 22720431 -101355741 + L1_Mur3 LINE L1 1219 1457 -4423 2 758 585 0 0 0 chr9 22720431 22720496 -101355676 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 758 6632 180 34 75 chr9 22720496 22720955 -101355217 + L1_Mur3 LINE L1 1458 1924 -3956 2 758 1291 111 22 16 chr9 22720955 22721139 -101355033 + B2_Mm2 SINE B2 2 186 -9 2 758 6632 183 35 77 chr9 22721139 22722129 -101354043 + L1_Mur3 LINE L1 1923 2852 -1062 2 758 8735 47 0 0 chr9 22722129 22723125 -101353047 + L1Md_T LINE L1 5587 6582 0 2 758 3663 155 66 136 chr9 22723125 22723339 -101352833 + L1_Mur3 LINE L1 2850 3064 -2816 2 758 228 67 0 0 chr9 22723339 22723369 -101352803 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 2 758 3663 155 66 136 chr9 22723369 22723488 -101352684 + L1_Mur3 LINE L1 3065 3182 -2698 2 758 913 33 8 0 chr9 22723492 22723613 -101352559 + B1_Mus1 SINE Alu 27 148 0 2 758 311 212 130 52 chr9 22723824 22723978 -101352194 + Lx7 LINE L1 7507 7672 -24 2 758 462 83 97 68 chr9 22724025 22724128 -101352044 + L1Md_F2 LINE L1 6477 6582 0 2 758 1015 135 146 0 chr9 22724154 22724346 -101351826 - L1_Mur2 LINE L1 -676 5201 4982 2 758 652 186 0 0 chr9 22724343 22724461 -101351711 + Lx3C LINE L1 6370 6487 -489 2 758 4486 14 2 0 chr9 22724461 22724953 -101351219 - MT2_Mm LTR ERVL 0 493 1 2 758 321 0 0 0 chr9 22724953 22724991 -101351181 - MERVL-int LTR ERVL 0 5485 5448 2 758 362 167 46 35 chr9 22724991 22725078 -101351094 - ORR1A3-int LTR MaLR -1323 640 553 2 758 41525 15 14 0 chr9 22725078 22730365 -101345807 - MERVL-int LTR ERVL -125 5360 1 2 758 4486 14 2 0 chr9 22730365 22730857 -101345315 - MT2_Mm LTR ERVL 0 493 1 2 758 2125 223 49 2 chr9 22730857 22731329 -101344843 + Lx3C LINE L1 6483 6976 0 2 758 26 30 0 0 chr9 22731329 22731362 -101344810 + AT_rich Low_complexity Low_complexity 1 33 0 2 758 1319 259 48 8 chr9 22731369 22731746 -101344426 + Lx8 LINE L1 5462 5853 -27 2 758 491 231 0 0 chr9 22731747 22731850 -101344322 + Lx8 LINE L1 6357 6459 -1237 2 758 1491 315 28 83 chr9 22731850 22732156 -101344016 + Lx8 LINE L1 6656 6953 -520 2 758 1139 240 36 100 chr9 22732156 22732545 -101343627 - ORR1D2 LTR MaLR -2 368 5 2 758 1491 315 28 83 chr9 22732545 22733069 -101343103 + Lx8 LINE L1 6954 7440 -33 2 758 329 347 122 24 chr9 22733433 22733728 -101342444 + L1MEc LINE L1 961 1284 -5131 2 758 629 277 171 80 chr9 22734211 22734944 -101341228 + L1MEc LINE L1 1797 2651 -3668 2 758 248 288 25 12 chr9 22734944 22735025 -101341147 + BC1_Mm scRNA scRNA 26 107 -45 2 758 629 277 171 80 chr9 22735025 22735589 -101340583 + L1MEc LINE L1 2652 3311 -3008 2 758 909 61 122 0 chr9 22735589 22735720 -101340452 + B1_Mm SINE Alu 1 147 0 2 758 525 296 147 115 chr9 22735720 22735837 -101340335 + L1MEc LINE L1 3312 3422 -2897 2 758 225 0 0 0 chr9 22735837 22735862 -101340310 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 758 525 296 147 115 chr9 22735862 22736197 -101339975 + L1MEc LINE L1 3423 3766 -2553 2 758 3999 226 80 33 chr9 22736256 22737714 -101338458 + Lx6 LINE L1 5792 7353 -343 2 758 215 164 35 35 chr9 22737722 22737779 -101338393 + T-rich Low_complexity Low_complexity 2 58 0 2 758 279 0 0 0 chr9 22737788 22737819 -101338353 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 758 438 20 0 0 chr9 22737819 22737869 -101338303 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 758 323 107 218 39 chr9 22737890 22737968 -101338204 + Lx6 LINE L1 7601 7692 -4 2 758 3837 100 5 30 chr9 22737984 22738561 -101337611 + L1VL4 LINE L1 398 960 -5342 2 758 788 83 0 0 chr9 22738573 22738681 -101337491 + MusHAL1 LINE L1 524 631 -2081 2 758 3050 63 21 0 chr9 22738679 22739108 -101337064 - L1_Mur2 LINE L1 -2184 1356 925 2 758 5725 137 27 67 chr9 22739115 22740200 -101335972 - Lx2 LINE L1 0 6997 5957 2 758 259 294 0 14 chr9 22741078 22741147 -101335025 + CT-rich Low_complexity Low_complexity 2 69 0 2 758 182 320 130 0 chr9 22744715 22744815 -101331357 + MIRc SINE MIR 105 217 -51 2 758 889 271 68 19 chr9 22745378 22745686 -101330486 + MER2 DNA MER2_type 17 339 -6 2 758 340 212 84 58 chr9 22746776 22746931 -101329241 + MER117 DNA MER1_type 1 159 -38 2 758 1151 268 81 14 chr9 22747111 22747455 -101328717 - ORR1D2 LTR MaLR -1 369 3 2 758 627 181 147 62 chr9 22749804 22749981 -101326191 - B2_Mm2 SINE B2 -3 192 1 2 758 387 0 0 0 chr9 22751636 22751679 -101324493 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 758 237 220 0 0 chr9 22751696 22751746 -101324426 - B1F SINE Alu -30 119 70 2 758 2951 229 126 17 chr9 22753599 22754475 -101321697 + RCHARR1 DNA MER1_type 2 972 -2 2 758 489 252 19 0 chr9 22754735 22754838 -101321334 - Lx7 LINE L1 -1283 6413 6309 2 758 742 242 40 59 chr9 22754851 22755053 -101321119 - B3A SINE B2 0 198 1 2 758 393 22 0 0 chr9 22755358 22755404 -101320768 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 758 236 259 188 0 chr9 22755624 22755709 -101320463 - PB1D10 SINE Alu -5 112 12 2 758 281 321 43 16 chr9 22757992 22758081 -101318091 + MIRb SINE MIR 25 119 -149 3 758 195 42 0 0 chr9 22758081 22758105 -101318067 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 758 281 321 43 16 chr9 22758105 22758202 -101317970 + MIRb SINE MIR 120 215 -53 3 758 642 276 23 21 chr9 22759488 22759722 -101316450 - L1M5 LINE L1 -503 5737 5502 3 758 8261 47 1 2 chr9 22759934 22761314 -101314858 - L1Md_F2 LINE L1 0 6582 5204 3 758 310 179 0 0 chr9 22761299 22761355 -101314817 + L1_Mm LINE L1 1433 1488 -4395 3 758 326 270 161 29 chr9 22761833 22762039 -101314133 - L1M5 LINE L1 -737 5436 5203 3 758 891 28 0 0 chr9 22762161 22762267 -101313905 + (GA)n Simple_repeat Simple_repeat 1 106 0 3 758 383 353 22 71 chr9 22762408 22762591 -101313581 - B4 SINE B4 -117 175 2 3 758 210 37 0 0 chr9 22762594 22762621 -101313551 + (TTTCC)n Simple_repeat Simple_repeat 4 30 0 3 758 551 74 0 12 chr9 22762622 22762704 -101313468 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 3 758 668 244 66 56 chr9 22762749 22762962 -101313210 - B3 SINE B2 -1 215 1 3 758 465 261 18 0 chr9 22762993 22763104 -101313068 + B3A SINE B2 1 113 -85 3 758 2583 295 150 82 chr9 22763109 22763494 -101312678 + Lx8 LINE L1 5613 5988 -1485 3 758 1723 196 82 13 chr9 22763494 22763882 -101312290 - MTD LTR MaLR 0 419 5 3 758 2583 295 150 82 chr9 22763882 22765120 -101311052 + Lx8 LINE L1 5989 7334 -139 3 758 212 0 36 0 chr9 22765120 22765148 -101311024 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 758 2583 295 150 82 chr9 22765148 22765195 -101310977 + Lx8 LINE L1 7335 7397 -76 3 758 818 290 82 7 chr9 22766361 22766666 -101309506 + MER2 DNA MER2_type 16 343 -2 3 758 288 0 0 0 chr9 22767380 22767412 -101308760 + (A)n Simple_repeat Simple_repeat 1 32 0 3 758 283 23 45 0 chr9 22767696 22767740 -101308432 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 3 758 251 248 140 19 chr9 22768198 22768305 -101307867 + MTEa LTR MaLR 242 361 -18 3 758 478 196 31 10 chr9 22769470 22769568 -101306604 - PB1D7 SINE Alu -7 113 14 3 758 284 179 30 0 chr9 22770406 22770473 -101305699 + C-rich Low_complexity Low_complexity 1 69 0 3 758 978 231 196 3 chr9 22772426 22772738 -101303434 + ORR1D1 LTR MaLR 3 374 0 3 758 510 312 55 44 chr9 22772767 22773042 -101303130 - Arthur1B DNA Tip100 -679 546 269 3 758 2364 231 121 103 chr9 22773091 22773799 -101302373 - Lx9 LINE L1 -5 7639 6947 3 758 1449 217 67 31 chr9 22773799 22774156 -101302016 + ORR1D2 LTR MaLR 1 370 0 3 758 2364 231 121 103 chr9 22774156 22774388 -101301784 - Lx9 LINE L1 -698 6946 6682 3 758 280 171 62 9 chr9 22774390 22774502 -101301670 + (TA)n Simple_repeat Simple_repeat 1 118 0 3 758 273 276 93 19 chr9 22774703 22774810 -101301362 + MER20 DNA MER1_type 43 157 -62 3 758 267 253 56 22 chr9 22774980 22775069 -101301103 - Arthur1B DNA Tip100 -1125 100 9 3 758 267 325 131 29 chr9 22775719 22775925 -101300247 - ORR1E LTR MaLR -129 230 4 3 758 229 326 42 57 chr9 22776052 22776244 -101299928 - L1M5 LINE L1 -366 5758 5570 3 758 405 191 73 106 chr9 22776314 22776437 -101299735 + B3A SINE B2 64 182 -16 3 758 1642 212 30 79 chr9 22776613 22777054 -101299118 + MTD LTR MaLR 1 419 0 3 758 243 306 61 95 chr9 22777061 22777209 -101298963 + MER5B DNA MER1_type 36 178 0 3 758 323 288 22 106 chr9 22777312 22777491 -101298681 + RSINE1 SINE B4 2 165 0 3 758 261 299 124 25 chr9 22777934 22778136 -101298036 - MLT1B LTR MaLR -1 389 168 3 758 503 296 118 31 chr9 22778171 22778202 -101297970 - ORR1E LTR MaLR -10 349 318 3 758 330 26 0 0 chr9 22778202 22778241 -101297931 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 758 503 296 118 31 chr9 22778241 22778530 -101297642 - ORR1E LTR MaLR -42 317 2 3 758 282 180 0 0 chr9 22778714 22778775 -101297397 + (TATG)n Simple_repeat Simple_repeat 4 64 0 3 758 195 100 0 0 chr9 22778775 22778805 -101297367 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 758 232 312 80 66 chr9 22778805 22778942 -101297230 + MER20 DNA MER1_type 69 207 -12 3 758 226 242 45 0 chr9 22780503 22780569 -101295603 - L1M2 LINE L1 -690 5601 5533 3 758 207 0 0 0 chr9 22782609 22782632 -101293540 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 758 599 286 41 124 chr9 22783020 22783431 -101292741 - MTEa LTR MaLR 0 379 3 3 758 183 263 108 69 chr9 22784677 22784779 -101291393 - MIRb SINE MIR -74 194 89 3 758 689 291 5 45 chr9 22785315 22785535 -101290637 + B3 SINE B2 1 211 -5 3 758 307 237 32 0 chr9 22785554 22785578 -101290594 + polypurine Low_complexity Low_complexity 2 25 0 3 758 819 46 0 0 chr9 22785578 22785755 -101290417 + L1_Mus1 LINE L1 6459 6567 0 3 758 424 296 48 29 chr9 22785814 22786023 -101290149 - MER96B DNA hAT -26 391 179 3 758 2275 255 84 13 chr9 22787005 22787610 -101288562 + Lx8 LINE L1 6548 7195 -278 3 758 2502 86 6 0 chr9 22787976 22788301 -101287871 - ORR1A2 LTR MaLR 0 327 1 3 758 253 262 0 0 chr9 22788368 22788429 -101287743 + L1VL2 LINE L1 521 581 -5754 3 758 2809 127 51 0 chr9 22788605 22789375 -101286797 + L1VL4 LINE L1 504 1314 -2301 3 758 957 339 36 33 chr9 22789949 22790647 -101285525 - MMERGLN-int LTR ERV1 -3307 4249 3550 3 758 312 269 53 27 chr9 22790732 22790912 -101285260 - MMERGLN-int LTR ERV1 -4284 3494 3316 3 758 1376 148 8 37 chr9 22791604 22791850 -101284322 - RLTR23 LTR ERV1 0 430 192 3 758 505 263 17 0 chr9 22791862 22791980 -101284192 + PB1D7 SINE Alu 1 120 0 3 758 180 0 0 0 chr9 22792152 22792172 -101284000 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 758 346 109 0 68 chr9 22794385 22794444 -101281728 - Lx7 LINE L1 -843 6853 6799 3 758 1104 57 12 25 chr9 22794451 22794614 -101281558 + B2_Mm2 SINE B2 29 189 -6 3 758 1183 123 0 32 chr9 22794614 22794799 -101281373 - Lx6 LINE L1 -658 6802 6624 3 758 4220 179 114 27 chr9 22794799 22795741 -101280431 + RMER3D-int LTR ERVK 1818 2841 -1 3 758 2640 223 22 12 chr9 22795742 22796342 -101279830 + RLTR17 LTR ERVK 4 609 -83 3 758 243 0 0 0 chr9 22797994 22798021 -101278151 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 758 449 288 92 77 chr9 22799221 22799481 -101276691 + B4A SINE B4 1 264 -28 3 758 58 28 0 0 chr9 22799508 22799580 -101276592 + AT_rich Low_complexity Low_complexity 1 72 0 3 758 357 24 0 0 chr9 22799592 22799634 -101276538 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 758 228 236 75 53 chr9 22800377 22800471 -101275701 - L2c LINE L2 -223 3164 3069 3 758 181 343 10 0 chr9 22800563 22800662 -101275510 + L2a LINE L2 2139 2238 -1181 3 758 348 264 0 0 chr9 22800772 22800897 -101275275 + (TG)n Simple_repeat Simple_repeat 2 126 0 3 758 746 291 65 88 chr9 22800908 22801202 -101274970 - B4A SINE B4 0 292 6 3 758 382 235 58 43 chr9 22801207 22801345 -101274827 + MLT1A1 LTR MaLR 257 396 -12 3 758 266 324 33 46 chr9 22801431 22801583 -101274589 + L2a LINE L2 2403 2552 -867 3 758 323 273 109 27 chr9 22801733 22801880 -101274292 - L1MB8 LINE L1 -173 6005 5847 3 758 682 323 95 53 chr9 22801886 22802563 -101273609 + L2a LINE L2 2556 3284 -142 3 758 258 32 0 0 chr9 22802563 22802594 -101273578 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 3 758 255 345 145 29 chr9 22802594 22802728 -101273444 + L2a LINE L2 3285 3415 -11 3 758 387 306 34 34 chr9 22802773 22802952 -101273220 - MIRb SINE MIR -9 259 81 3 758 423 262 19 0 chr9 22803069 22803176 -101272996 - ORR1C2 LTR MaLR -55 329 221 3 758 243 0 0 0 chr9 22803514 22803541 -101272631 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 758 225 0 0 0 chr9 22803558 22803583 -101272589 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 3 758 264 229 16 0 chr9 22805255 22805316 -101270856 + MLT1C LTR MaLR 406 467 0 3 758 237 150 28 57 chr9 22805847 22805953 -101270219 + (TTATA)n Simple_repeat Simple_repeat 1 103 0 3 758 855 214 91 25 chr9 22806034 22806231 -101269941 + B3 SINE B2 1 210 -6 3 94 1060 236 77 138 chr9 22806329 22806771 -101269401 - MTD LTR MaLR 0 419 5 3 759 187 299 91 11 chr9 22811029 22811117 -101265055 - L2b LINE L2 -6 3369 3275 3 759 563 296 134 91 chr9 22811650 22812245 -101263927 - MLT1E2 LTR MaLR 0 627 4 3 759 448 257 115 16 chr9 22812974 22813156 -101263016 - Tigger5 DNA MER2_type -71 2335 2136 3 759 246 244 244 0 chr9 22813251 22813341 -101262831 - PB1D10 SINE Alu -5 112 1 3 759 197 345 33 16 chr9 22814876 22814997 -101261175 + MIR SINE MIR 32 154 -108 3 759 273 293 30 20 chr9 22817528 22817629 -101258543 + PB1D9 SINE Alu 7 108 -12 3 759 222 62 0 0 chr9 22817629 22817661 -101258511 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 759 240 325 56 0 chr9 22818065 22818225 -101257947 + L1M4 LINE L1 3386 3554 -2592 3 759 785 287 67 50 chr9 22818415 22818756 -101257416 - MT2A LTR ERVL 0 533 187 3 759 357 355 35 0 chr9 22818771 22818856 -101257316 - MT2A LTR ERVL -323 210 1 3 759 458 288 17 0 chr9 22818856 22818974 -101257198 - MTEa LTR MaLR -259 120 1 3 759 446 0 19 0 chr9 22819277 22819331 -101256841 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 759 1541 250 88 26 chr9 22819487 22819955 -101256217 + RLTR20A LTR ERVK 1 497 -44 3 759 195 42 0 0 chr9 22819982 22820006 -101256166 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 3 759 1420 72 0 0 chr9 22820006 22820187 -101255985 - L1_Mus1 LINE L1 -3 6564 6384 3 759 350 82 0 20 chr9 22820187 22820237 -101255935 + L1_Mus1 LINE L1 6126 6174 -393 3 759 227 191 15 0 chr9 22820430 22820498 -101255674 + GA-rich Low_complexity Low_complexity 4 72 0 3 759 321 256 37 0 chr9 22821167 22821249 -101254923 + ID_B1 SINE B4 137 221 -3 3 759 669 220 76 16 chr9 22821259 22821444 -101254728 + B3A SINE B2 2 197 -1 3 759 366 296 47 76 chr9 22821643 22821815 -101254357 - B4 SINE B4 -86 206 40 3 759 3866 151 100 147 chr9 22821818 22822975 -101253197 + RLTR25A LTR ERVK 1 1103 0 3 759 225 203 34 0 chr9 22822975 22823017 -101253155 - B4A SINE B4 -248 44 1 3 759 567 288 26 0 chr9 22823165 22823318 -101252854 - MLT1D LTR MaLR -7 498 342 3 759 444 279 49 32 chr9 22823324 22823346 -101252826 - CYRA11_Mm Unknown Y-chromosome -250 367 180 3 759 1078 117 0 0 chr9 22823346 22823509 -101252663 + URR1A DNA MER1_type 55 217 -9 3 759 2613 70 202 0 chr9 22823923 22824364 -101251808 + RLTR47_MM LTR ERV1 3 532 0 4 759 252 0 0 0 chr9 22824740 22824768 -101251404 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 759 252 0 0 0 chr9 22824833 22824861 -101251311 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 759 935 32 144 0 chr9 22824944 22825069 -101251103 - B1_Mus2 SINE Alu 0 147 5 4 759 335 220 0 58 chr9 22825784 22825882 -101250290 - Lx7 LINE L1 -4 7692 7617 4 759 523 247 237 17 chr9 22825914 22826091 -101250081 - B3 SINE B2 0 216 1 4 759 720 222 82 10 chr9 22826111 22826307 -101249865 - B3 SINE B2 -6 210 1 4 759 21 57 0 0 chr9 22826445 22826480 -101249692 + AT_rich Low_complexity Low_complexity 1 35 0 4 759 891 221 55 0 chr9 22826674 22826873 -101249299 - B3 SINE B2 -6 210 1 4 759 569 264 7 0 chr9 22826937 22827081 -101249091 + RSINE1 SINE B4 4 148 -17 4 759 402 279 24 36 chr9 22827154 22827368 -101248804 - L1MA4 LINE L1 -301 5996 5782 4 759 1221 246 69 40 chr9 22827418 22827766 -101248406 + ORR1D2 LTR MaLR 1 358 -12 4 759 1855 201 85 9 chr9 22827828 22828274 -101247898 + RLTR20D LTR ERVK 1 480 -88 4 759 201 108 0 0 chr9 22828274 22828311 -101247861 + (T)n Simple_repeat Simple_repeat 1 37 0 4 759 260 239 0 40 chr9 22828337 22828411 -101247761 + RLTR20D LTR ERVK 508 578 0 4 759 659 267 81 70 chr9 22828453 22828824 -101247348 + L1M2 LINE L1 5263 5637 -663 4 759 413 279 57 7 chr9 22830480 22830621 -101245551 + B1F SINE Alu 1 148 -1 4 759 259 268 11 23 chr9 22830712 22830800 -101245372 - L1MC4a LINE L1 -8 7874 7788 4 759 946 167 11 0 chr9 22831059 22831233 -101244939 + URR1B DNA MER1_type 50 225 0 4 759 526 278 35 28 chr9 22831257 22831456 -101244716 - L1MD2 LINE L1 -2097 5898 5689 4 759 216 0 0 0 chr9 22832143 22832167 -101244005 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 4 759 420 292 43 28 chr9 22834254 22834395 -101241777 + MIRc SINE MIR 14 156 -112 4 759 1121 268 51 11 chr9 22835858 22836209 -101239963 + MLT1A0 LTR MaLR 1 365 0 4 759 335 322 28 25 chr9 22837359 22837495 -101238677 + MIRb SINE MIR 22 167 -101 4 759 348 127 0 0 chr9 22839120 22839175 -101236997 + (CAT)n Simple_repeat Simple_repeat 2 56 0 4 759 338 250 95 16 chr9 22840239 22840365 -101235807 + MER5A1 DNA MER1_type 18 153 -13 4 759 267 316 48 86 chr9 22841460 22841647 -101234525 - MamRep434 DNA TcMar -146 280 101 4 759 974 157 0 6 chr9 22842657 22842836 -101233336 + CT-rich Low_complexity Low_complexity 3 180 0 4 759 265 223 59 63 chr9 22842941 22843040 -101233132 - PB1D10 SINE Alu -5 122 17 4 759 604 292 41 28 chr9 22843373 22843591 -101232581 + MLT1B LTR MaLR 1 221 -169 4 759 444 286 149 42 chr9 22843701 22844009 -101232163 - MLT1B LTR MaLR -49 341 1 4 759 438 319 26 0 chr9 22844783 22844899 -101231273 + RSINE1 SINE B4 1 119 -46 4 759 1155 96 0 0 chr9 22844918 22845085 -101231087 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 759 199 349 104 0 chr9 22845491 22845597 -101230575 + MIRc SINE MIR 113 229 -39 4 759 186 43 0 0 chr9 22845933 22845956 -101230216 + (GGA)n Simple_repeat Simple_repeat 2 24 0 4 759 220 305 0 0 chr9 22847288 22847347 -101228825 + L2b LINE L2 3080 3138 -237 4 759 832 324 39 8 chr9 22848556 22848814 -101227358 + MLT1A0 LTR MaLR 54 319 -46 4 759 384 22 0 0 chr9 22848862 22848907 -101227265 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 4 759 251 269 26 0 chr9 22848991 22849069 -101227103 - ID4 SINE ID -1 82 3 4 759 284 338 56 25 chr9 22849122 22849283 -101226889 - MLT1F LTR MaLR -159 389 224 4 759 21 82 0 0 chr9 22850741 22850790 -101225382 + AT_rich Low_complexity Low_complexity 1 49 0 4 759 353 323 70 29 chr9 22851233 22851405 -101224767 - L1MC3 LINE L1 -1140 6645 6467 4 759 380 156 0 9 chr9 22851405 22851515 -101224657 + CT-rich Low_complexity Low_complexity 2 110 0 4 759 695 319 85 6 chr9 22851842 22852173 -101223999 - L1MB3 LINE L1 -346 5837 5481 4 759 359 293 78 12 chr9 22852663 22852829 -101223343 + MER113 DNA MER1_type 280 456 -65 4 759 189 0 0 0 chr9 22855402 22855423 -101220749 + (CTG)n Simple_repeat Simple_repeat 1 21 0 4 759 339 351 44 0 chr9 22855608 22855722 -101220450 - MER103 DNA DNA -47 119 1 4 759 286 286 0 35 chr9 22856699 22856786 -101219386 - Tigger7 DNA MER2_type -3 2488 2405 4 759 331 328 132 28 chr9 22856796 22856978 -101219194 - Tigger7 DNA MER2_type -2222 269 69 4 759 630 260 44 57 chr9 22856983 22857142 -101219030 - RSINE1 SINE B4 -1 164 8 4 759 207 0 0 0 chr9 22857417 22857440 -101218732 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 759 21 36 0 0 chr9 22857440 22857468 -101218704 + AT_rich Low_complexity Low_complexity 1 28 0 4 759 412 223 73 204 chr9 22857523 22857556 -101218616 - B2_Mm2 SINE B2 -4 191 162 4 759 204 67 0 0 chr9 22857556 22857586 -101218586 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 759 618 223 73 204 chr9 22857586 22857728 -101218444 - B3A SINE B2 -34 161 37 4 759 1169 56 21 0 chr9 22857728 22857871 -101218301 - B1_Mus2 SINE Alu 0 147 2 4 759 618 263 6 143 chr9 22857871 22857914 -101218258 - B3A SINE B2 -158 40 1 4 759 813 274 47 9 chr9 22857938 22858152 -101218020 - ID_B1 SINE B4 0 224 3 4 759 632 140 40 0 chr9 22858505 22858605 -101217567 + B3A SINE B2 1 104 -94 4 759 5383 103 6 13 chr9 22858613 22858662 -101217510 - ORR1A3-int LTR MaLR 0 1963 1915 4 759 3313 38 2 10 chr9 22858662 22859061 -101217111 + MTA_Mm LTR MaLR 1 396 0 4 759 5383 103 6 13 chr9 22859061 22859794 -101216378 - ORR1A3-int LTR MaLR -49 1914 1186 4 759 323 65 92 46 chr9 22859788 22859853 -101216319 - ORR1A3-int LTR MaLR -1323 469 402 4 759 301 192 0 5 chr9 22859866 22859921 -101216251 + B1F SINE Alu 12 64 -53 4 759 266 216 0 97 chr9 22859921 22859943 -101216229 + ID_B1 SINE B4 105 161 -63 4 759 541 306 0 15 chr9 22860061 22860197 -101215975 + MTE2b LTR MaLR 210 343 -36 4 759 234 0 0 0 chr9 22860579 22860605 -101215567 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 759 628 190 14 15 chr9 22860618 22860765 -101215407 - B1_Mur3 SINE Alu -1 148 8 4 759 5022 222 77 11 chr9 22860769 22861939 -101214233 - Lx9 LINE L1 -241 7403 6157 4 759 207 0 0 0 chr9 22862001 22862024 -101214148 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 4 759 292 282 152 89 chr9 22862047 22862238 -101213934 - B3 SINE B2 -13 203 1 4 759 2421 250 38 0 chr9 22862287 22862890 -101213282 - Lx9 LINE L1 -6467 1141 516 4 759 349 333 0 0 chr9 22867889 22867991 -101208181 - Tigger5 DNA MER2_type -3 2403 2302 4 759 451 362 60 36 chr9 22868239 22868491 -101207681 - MIRb SINE MIR -6 262 5 4 759 391 265 179 22 chr9 22868538 22868769 -101207403 + MER117 DNA MER1_type 2 197 0 4 759 258 306 59 56 chr9 22870912 22871132 -101205040 - MIRb SINE MIR -49 219 4 4 759 292 270 26 22 chr9 22871444 22871547 -101204625 - MIRb SINE MIR -69 199 90 4 759 306 206 16 0 chr9 22871841 22871904 -101204268 - MIRc SINE MIR -115 153 90 4 759 189 283 62 42 chr9 22872041 22872137 -101204035 - MER5A DNA MER1_type 0 189 92 4 759 324 0 0 0 chr9 22872178 22872214 -101203958 + (CTG)n Simple_repeat Simple_repeat 3 38 0 4 759 377 305 82 21 chr9 22872874 22873068 -101203104 - MIRb SINE MIR -8 260 55 4 759 274 295 22 33 chr9 22873900 22873991 -101202181 - MIRb SINE MIR -48 220 131 4 759 392 327 42 1 chr9 22875314 22875479 -101200693 + MIRb SINE MIR 12 187 -81 4 759 21 71 0 0 chr9 22876185 22876227 -101199945 + AT_rich Low_complexity Low_complexity 1 42 0 4 759 210 186 23 0 chr9 22876649 22876692 -101199480 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 4 759 269 305 198 28 chr9 22877466 22877648 -101198524 + MIRb SINE MIR 33 245 -23 4 759 358 252 37 9 chr9 22877821 22877929 -101198243 + PB1D7 SINE Alu 1 111 -9 4 759 243 0 0 0 chr9 22878823 22878850 -101197322 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 759 282 267 165 36 chr9 22879050 22879244 -101196928 + L1MB7 LINE L1 5931 6149 -35 4 759 1179 282 122 10 chr9 22879498 22880106 -101196066 + L1_Mur3 LINE L1 5116 5810 -379 4 759 917 240 57 109 chr9 22880109 22880493 -101195679 - ORR1D1 LTR MaLR -8 366 3 4 759 263 143 17 67 chr9 22880541 22880601 -101195571 + L1MA5 LINE L1 5880 5936 -364 4 759 469 266 0 34 chr9 22880634 22880782 -101195390 - B1F SINE Alu -2 147 5 4 759 26 0 0 0 chr9 22880931 22880957 -101195215 + AT_rich Low_complexity Low_complexity 1 26 0 4 759 575 112 10 0 chr9 22881463 22881561 -101194611 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 759 492 303 16 8 chr9 22881561 22881684 -101194488 - RSINE1 SINE B4 -41 124 1 4 759 228 228 0 0 chr9 22882241 22882298 -101193874 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 759 243 217 0 0 chr9 22882324 22882384 -101193788 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 4 759 220 295 71 31 chr9 22882439 22882537 -101193635 - MIRb SINE MIR -164 104 3 4 759 1119 264 99 46 chr9 22883720 22884065 -101192107 + MTD LTR MaLR 7 369 -50 4 759 413 235 40 18 chr9 22884068 22884293 -101191879 + CT-rich Low_complexity Low_complexity 1 229 0 4 759 590 99 11 0 chr9 22884294 22884385 -101191787 + (TCTCC)n Simple_repeat Simple_repeat 2 93 0 4 759 312 27 0 0 chr9 22884387 22884424 -101191748 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 4 759 600 171 0 0 chr9 22884680 22884791 -101191381 + (TA)n Simple_repeat Simple_repeat 2 112 0 4 759 235 289 227 29 chr9 22884815 22885022 -101191150 - MLT2B3 LTR ERVL -61 656 409 4 759 311 352 24 16 chr9 22885137 22885264 -101190908 - MLT2B3 LTR ERVL -407 263 136 4 759 265 285 7 174 chr9 22885264 22885278 -101190894 - MTEa LTR MaLR -250 91 6 4 759 515 316 77 43 chr9 22885375 22885610 -101190562 + MTE2a LTR MaLR 137 379 0 4 759 2368 279 56 26 chr9 22885671 22886477 -101189695 + Lx8 LINE L1 6609 7438 -35 5 759 22 0 0 0 chr9 22886487 22886509 -101189663 + AT_rich Low_complexity Low_complexity 1 22 0 5 759 316 226 48 33 chr9 22886582 22886698 -101189474 + L1M2 LINE L1 5474 5586 -726 5 759 736 322 107 0 chr9 22886720 22886962 -101189210 + B4A SINE B4 7 274 -18 5 759 286 224 17 0 chr9 22886996 22887112 -101189060 + (CA)n Simple_repeat Simple_repeat 2 119 0 5 759 596 201 0 27 chr9 22887130 22887314 -101188858 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 759 232 306 0 0 chr9 22887314 22887386 -101188786 + L1M2 LINE L1 5610 5681 -631 5 759 21 57 0 0 chr9 22887498 22887533 -101188639 + AT_rich Low_complexity Low_complexity 1 35 0 5 759 236 216 0 19 chr9 22887666 22887718 -101188454 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 759 322 315 102 6 chr9 22889160 22889326 -101186846 + MER2 DNA MER2_type 5 186 -159 5 759 1913 136 11 168 chr9 22889332 22889790 -101186382 - ORR1B1 LTR MaLR -8 386 1 5 759 290 333 55 33 chr9 22890305 22890488 -101185684 - Charlie10 DNA MER1_type -2635 187 1 5 759 266 107 18 0 chr9 22891673 22891729 -101184443 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 5 759 225 0 0 0 chr9 22891731 22891756 -101184416 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 759 504 189 121 16 chr9 22891789 22891913 -101184259 - B3 SINE B2 -77 139 3 5 759 21 0 0 0 chr9 22892213 22892234 -101183938 + AT_rich Low_complexity Low_complexity 1 21 0 5 759 267 301 0 0 chr9 22892260 22892333 -101183839 - RSINE1 SINE B4 0 165 93 5 759 708 86 0 0 chr9 22893179 22893284 -101182888 + (TC)n Simple_repeat Simple_repeat 2 106 0 5 759 249 340 18 9 chr9 22893521 22893631 -101182541 - L1M5 LINE L1 -1533 4613 4503 5 759 1350 206 101 9 chr9 22894470 22894807 -101181365 - RLTR31A_Mm LTR ERVK -52 532 165 5 759 21 0 0 0 chr9 22894807 22894828 -101181344 + AT_rich Low_complexity Low_complexity 1 21 0 5 759 543 201 105 48 chr9 22894872 22895081 -101181091 - RLTR31_Mm LTR ERVK -340 221 1 5 759 326 280 145 45 chr9 22895150 22895371 -101180801 + MLT2F LTR ERVL 418 660 -3 5 759 225 259 17 0 chr9 22897701 22897759 -101178413 + MIRc SINE MIR 173 231 -37 5 759 495 281 156 39 chr9 22898050 22898388 -101177784 - MLT1F2 LTR MaLR 0 653 178 5 759 325 266 126 34 chr9 22898431 22898701 -101177471 + MER31A LTR ERV1 24 435 -31 5 759 413 317 34 7 chr9 22898744 22898890 -101177282 - MLT1F2 LTR MaLR -410 150 1 5 759 594 224 110 78 chr9 22899623 22899841 -101176331 - URR1A DNA MER1_type -1 225 1 5 759 1634 187 81 16 chr9 22900106 22900414 -101175758 + ORR1B1 LTR MaLR 1 336 -58 5 759 2217 60 4 0 chr9 22900414 22900695 -101175477 + L1Md_F2 LINE L1 6301 6582 0 5 759 1634 187 81 16 chr9 22900695 22900756 -101175416 + ORR1B1 LTR MaLR 337 394 0 5 759 1116 89 0 0 chr9 22903681 22903827 -101172345 - B1_Mus2 SINE Alu 0 147 2 5 759 369 75 0 0 chr9 22903926 22903979 -101172193 + (CAT)n Simple_repeat Simple_repeat 2 54 0 5 759 906 99 0 0 chr9 22905821 22905952 -101170220 + (GGAA)n Simple_repeat Simple_repeat 3 133 0 5 759 885 244 132 28 chr9 22907266 22907636 -101168536 + MT2A LTR ERVL 1 542 -59 5 759 524 15 15 0 chr9 22907636 22907701 -101168471 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 5 759 1125 148 113 5 chr9 22907719 22907923 -101168249 - URR1A DNA MER1_type 0 226 1 5 759 469 279 75 75 chr9 22909101 22909395 -101166777 - MLT1B LTR MaLR 0 390 97 5 759 1056 177 84 0 chr9 22909404 22909607 -101166565 - URR1B DNA MER1_type -5 220 1 5 759 218 202 12 37 chr9 22910779 22910861 -101165311 + A-rich Low_complexity Low_complexity 3 82 0 5 759 405 0 0 0 chr9 22910915 22910960 -101165212 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 759 235 323 122 51 chr9 22910986 22911251 -101164921 + L1M2 LINE L1 1724 2003 -4846 5 759 730 235 73 20 chr9 22911251 22911455 -101164717 + B3 SINE B2 2 216 0 5 759 235 323 122 51 chr9 22911455 22911497 -101164675 + L1M2 LINE L1 2004 2070 -4779 5 759 369 0 0 0 chr9 22911497 22911538 -101164634 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 759 5549 264 71 31 chr9 22911538 22913054 -101163118 + L1M2 LINE L1 2071 3759 -2823 5 759 474 18 0 0 chr9 22913054 22913109 -101163063 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 759 5549 263 71 31 chr9 22913109 22913689 -101162483 + L1M2 LINE L1 3760 4353 -2229 5 759 1219 69 6 11 chr9 22913689 22913865 -101162307 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 5 759 411 21 0 0 chr9 22913872 22913920 -101162252 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5 759 5549 263 71 31 chr9 22913920 22914071 -101162101 + L1M2 LINE L1 4354 4497 -2085 5 759 402 338 55 20 chr9 22915276 22915478 -101160694 - MER58A DNA MER1_type -14 210 2 5 759 22 0 0 0 chr9 22916294 22916316 -101159856 + AT_rich Low_complexity Low_complexity 1 22 0 5 759 600 257 28 28 chr9 22916511 22916691 -101159481 - MER3 DNA MER1_type -26 183 4 5 759 186 43 0 0 chr9 22917461 22917484 -101158688 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 5 759 239 93 0 23 chr9 22919927 22919971 -101156201 + (TTA)n Simple_repeat Simple_repeat 2 44 0 5 759 210 327 9 46 chr9 22920112 22920221 -101155951 + MIRm SINE MIR 45 149 -127 5 759 1361 91 0 0 chr9 22920371 22920547 -101155625 + B2_Mm2 SINE B2 1 176 -19 5 759 7012 30 1 0 chr9 22921658 22922466 -101153706 + L1Md_A LINE L1 5773 6581 -1 5 759 353 224 43 101 chr9 22923297 22923334 -101152838 + MT2B LTR ERVL 134 162 -439 5 759 558 184 96 0 chr9 22923334 22923453 -101152719 + B1_Mur1 SINE Alu 2 132 -18 5 759 261 0 0 0 chr9 22923453 22923482 -101152690 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 759 423 0 0 0 chr9 22923887 22923934 -101152238 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 759 948 77 0 0 chr9 22923935 22924065 -101152107 + (GA)n Simple_repeat Simple_repeat 1 130 0 5 759 678 247 0 0 chr9 22924695 22924873 -101151299 + CT-rich Low_complexity Low_complexity 2 179 0 5 759 279 316 86 51 chr9 22925015 22925359 -101150813 + MLT1A1 LTR MaLR 15 408 0 5 759 246 285 29 71 chr9 22925640 22925780 -101150392 + MIRb SINE MIR 114 247 -21 5 759 187 338 51 13 chr9 22925811 22925889 -101150283 + MIRb SINE MIR 18 98 -170 5 759 2470 268 60 36 chr9 22926065 22926816 -101149356 + Lx8 LINE L1 6475 7243 -230 5 759 686 246 77 47 chr9 22926849 22927084 -101149088 + Lx8 LINE L1 7230 7471 -2 5 759 584 259 34 68 chr9 22927103 22927339 -101148833 + L1MC1 LINE L1 5440 5667 -666 5 759 799 266 26 17 chr9 22927495 22927728 -101148444 + L1MC1 LINE L1 5667 5901 -432 5 759 442 304 90 44 chr9 22927973 22928346 -101147826 + L1MC1 LINE L1 5945 6341 -3 5 759 1179 165 31 22 chr9 22928927 22929150 -101147022 + URR1B DNA MER1_type 1 225 0 5 759 216 365 46 20 chr9 22931294 22931445 -101144727 + MIRb SINE MIR 5 159 -109 5 759 611 319 26 78 chr9 22931597 22931941 -101144231 + LTR48B LTR ERV1 10 335 -309 5 759 478 297 112 32 chr9 22932118 22932456 -101143716 + LTR73 LTR ERV1 41 405 -167 5 759 699 44 0 0 chr9 22932675 22932766 -101143406 + (CAGG)n Simple_repeat Simple_repeat 2 92 0 5 759 22 0 0 0 chr9 22933760 22933782 -101142390 + AT_rich Low_complexity Low_complexity 1 22 0 5 759 233 321 53 35 chr9 22935897 22936068 -101140104 + L1M LINE L1 5254 5427 -697 5 759 1209 196 108 65 chr9 22936959 22937457 -101138715 + RMER4B LTR ERVK 26 581 -4 5 760 257 272 0 90 chr9 22937985 22938040 -101138132 - B3 SINE B2 -125 91 38 5 760 1545 198 22 103 chr9 22938040 22938446 -101137726 - ORR1D1 LTR MaLR 0 374 2 5 760 257 272 0 90 chr9 22938446 22938479 -101137693 - B3 SINE B2 -179 37 11 5 760 3341 118 66 23 chr9 22940092 22940649 -101135523 + RMER4B LTR ERVK 5 585 0 5 760 340 272 160 58 chr9 22941250 22941406 -101134766 + MIRb SINE MIR 27 198 -70 5 760 274 198 45 9 chr9 22941725 22941837 -101134335 + CT-rich Low_complexity Low_complexity 1 116 0 5 760 184 277 59 44 chr9 22941875 22941943 -101134229 + MIRc SINE MIR 76 144 -124 5 760 189 348 93 29 chr9 22942013 22942152 -101134020 - L2a LINE L2 -1 3425 3278 5 760 387 0 0 0 chr9 22942202 22942245 -101133927 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 760 197 331 104 40 chr9 22942292 22942465 -101133707 - L2a LINE L2 -319 3107 2924 5 760 1303 254 76 18 chr9 22945046 22945442 -101130730 - MTD LTR MaLR 0 419 1 5 760 345 224 280 0 chr9 22945792 22945899 -101130273 + B1_Mur1 SINE Alu 2 138 -11 5 760 235 258 65 43 chr9 22946574 22946667 -101129505 - MIRb SINE MIR -84 184 90 5 760 332 266 46 92 chr9 22949371 22949524 -101126648 + RSINE1 SINE B4 13 158 -7 5 760 228 86 0 0 chr9 22949769 22949804 -101126368 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 760 402 223 168 92 chr9 22949936 22950077 -101126095 + B3A SINE B2 1 167 -31 5 760 324 0 0 0 chr9 22950077 22950113 -101126059 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 760 233 223 168 92 chr9 22950113 22950144 -101126028 + B2_Mm2 SINE B2 162 186 -9 5 760 1209 149 0 20 chr9 22950371 22950569 -101125603 + B2_Mm2 SINE B2 1 194 -1 5 760 493 173 8 8 chr9 22950661 22950789 -101125383 + (TG)n Simple_repeat Simple_repeat 1 128 0 5 760 529 338 89 69 chr9 22953022 22953514 -101122658 + MLT1F2 LTR MaLR 59 560 0 5 760 499 169 12 0 chr9 22954180 22954263 -101121909 - B3 SINE B2 -131 85 2 5 760 366 269 0 0 chr9 22954323 22954401 -101121771 - ID4 SINE ID -3 80 3 5 760 224 278 33 0 chr9 22954732 22954822 -101121350 + (TTCTG)n Simple_repeat Simple_repeat 3 95 0 5 760 241 215 31 0 chr9 22954756 22954821 -101121351 + T-rich Low_complexity Low_complexity 4 70 0 5 760 261 0 0 0 chr9 22955084 22955113 -101121059 + (T)n Simple_repeat Simple_repeat 1 29 0 5 760 1834 98 120 17 chr9 22955684 22955985 -101120187 - Lx LINE L1 0 6654 6323 5 760 459 326 170 48 chr9 22956015 22956514 -101119658 - MLT1F2 LTR MaLR 0 560 1 5 760 2950 143 55 53 chr9 22956912 22957495 -101118677 + RMER4B LTR ERVK 1 584 -1 5 760 1769 181 38 30 chr9 22958263 22958634 -101117538 + ORR1D1 LTR MaLR 1 374 0 5 760 1541 177 130 23 chr9 22958876 22959065 -101117107 - ORR1C2 LTR MaLR 0 384 181 5 760 558 43 0 0 chr9 22959065 22959134 -101117038 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 5 760 1541 177 130 23 chr9 22959134 22959291 -101116881 - ORR1C2 LTR MaLR -204 180 1 5 760 1176 167 5 14 chr9 22959495 22959713 -101116459 - MT2A LTR ERVL -255 278 63 5 760 479 145 45 28 chr9 22959724 22959901 -101116271 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 760 459 0 0 0 chr9 22960877 22960928 -101115244 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 760 246 301 48 0 chr9 22962418 22962501 -101113671 + PB1D7 SINE Alu 32 118 -2 6 760 450 0 0 0 chr9 22962588 22962638 -101113534 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 760 1021 106 0 27 chr9 22962638 22962823 -101113349 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 760 916 156 0 11 chr9 22962825 22963007 -101113165 + GA-rich Low_complexity Low_complexity 1 180 0 6 760 191 36 0 35 chr9 22963005 22963034 -101113138 + (GGGAGA)n Simple_repeat Simple_repeat 5 32 0 6 760 23 33 0 0 chr9 22963603 22963633 -101112539 + AT_rich Low_complexity Low_complexity 1 30 0 6 760 3549 23 0 0 chr9 22963722 22964118 -101112054 - MTA_Mm LTR MaLR 0 396 1 6 760 750 272 62 13 chr9 22964262 22964584 -101111588 + MER44A DNA MER2_type 11 339 0 6 760 2152 248 63 25 chr9 22965751 22966327 -101109845 + RCHARR1 DNA MER1_type 27 629 -345 6 760 402 21 0 0 chr9 22966327 22966374 -101109798 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 760 2152 262 442 12 chr9 22966374 22966613 -101109559 + RCHARR1 DNA MER1_type 630 966 -8 6 760 681 173 0 0 chr9 22966808 22966935 -101109237 + (TA)n Simple_repeat Simple_repeat 2 128 0 6 760 285 266 37 25 chr9 22966957 22967038 -101109134 + MIRm SINE MIR 192 273 -3 6 760 3183 63 43 2 chr9 22968071 22968488 -101107684 - L1Md_F2 LINE L1 -3 6579 6146 6 760 296 299 20 10 chr9 22968530 22968628 -101107544 + RSINE1 SINE B4 3 101 -64 6 760 4202 226 111 28 chr9 22968864 22970169 -101106003 + RMER1A Other Other 1 1030 0 6 760 185 65 32 0 chr9 22970246 22970277 -101105895 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 760 225 0 0 0 chr9 22971979 22972004 -101104168 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 760 699 289 44 138 chr9 22973940 22974346 -101101826 + MLT1A LTR MaLR 3 370 -4 6 760 442 219 29 0 chr9 22974343 22974448 -101101724 + ORR1D1 LTR MaLR 44 151 -223 6 760 400 174 0 65 chr9 22974434 22974460 -101101712 + ORR1D1 LTR MaLR 285 305 -65 6 760 1892 187 13 16 chr9 22974460 22974835 -101101337 - ORR1D1 LTR MaLR 0 374 1 6 760 400 174 0 65 chr9 22974835 22974900 -101101272 + ORR1D1 LTR MaLR 306 370 0 6 760 223 222 0 18 chr9 22974900 22974955 -101101217 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 6 760 181 310 147 20 chr9 22977204 22977306 -101098866 - MIRb SINE MIR -10 258 144 6 760 209 191 57 29 chr9 22977708 22977778 -101098394 + A-rich Low_complexity Low_complexity 2 73 0 6 760 1342 207 61 72 chr9 22977782 22977813 -101098359 - Lx7 LINE L1 -335 7361 7334 6 760 504 32 0 0 chr9 22977813 22977875 -101098297 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 760 2763 231 161 50 chr9 22977875 22978987 -101097185 - Lx7 LINE L1 -363 7333 6096 6 760 808 314 121 7 chr9 22980524 22980813 -101095359 - MTD LTR MaLR -73 346 25 6 760 348 294 177 21 chr9 22980882 22981125 -101095047 - MER74A LTR ERVL -277 281 1 6 760 672 98 0 0 chr9 22981703 22981805 -101094367 + (TC)n Simple_repeat Simple_repeat 2 103 0 6 760 306 0 0 0 chr9 22981806 22981840 -101094332 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 760 378 0 0 0 chr9 22982653 22982695 -101093477 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 760 209 239 0 27 chr9 22984271 22984344 -101091828 + L2a LINE L2 3312 3382 -44 6 760 224 135 0 0 chr9 22984996 22985033 -101091139 + B2_Mm2 SINE B2 2 38 -157 6 760 533 289 60 12 chr9 22985137 22985305 -101090867 - B3A SINE B2 -7 191 16 6 760 303 288 0 0 chr9 22986501 22986567 -101089605 - L2a LINE L2 -1 3425 3360 6 760 183 170 0 0 chr9 22986608 22986655 -101089517 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 760 243 0 0 0 chr9 22986685 22986712 -101089460 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 760 234 0 0 0 chr9 22986712 22986737 -101089435 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 760 1133 54 24 0 chr9 22986737 22986902 -101089270 + (GA)n Simple_repeat Simple_repeat 1 170 0 6 760 268 242 0 70 chr9 22986941 22986952 -101089220 - tRNA-Ala-GCY_ tRNA tRNA -4 71 6 6 760 324 203 0 17 chr9 22986952 22987012 -101089160 - ID4 SINE ID -13 70 12 6 760 260 298 138 7 chr9 22987027 22987070 -101089102 + L1MA5 LINE L1 6059 6100 -203 6 760 3249 43 13 5 chr9 22987070 22987463 -101088709 - MTA_Mm LTR MaLR 0 396 1 6 760 448 208 55 40 chr9 22987463 22987589 -101088583 + L1MA5 LINE L1 6101 6239 -61 6 760 218 0 70 23 chr9 22987736 22987779 -101088393 + (TTA)n Simple_repeat Simple_repeat 1 45 0 6 760 945 234 25 0 chr9 22987800 22987997 -101088175 - B3 SINE B2 -14 202 1 6 760 434 276 41 0 chr9 22988009 22988132 -101088040 - B1F SINE Alu -19 130 3 6 760 852 158 7 0 chr9 22988164 22988303 -101087869 + B1_Mus1 SINE Alu 1 140 -8 6 760 306 87 0 0 chr9 22988303 22988349 -101087823 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 6 760 1837 168 50 40 chr9 22988920 22989298 -101086874 - ORR1C2 LTR MaLR 0 384 3 6 760 450 263 0 0 chr9 22989367 22989616 -101086556 + (TG)n Simple_repeat Simple_repeat 1 249 0 6 760 407 260 78 39 chr9 22989645 22989773 -101086399 - B3A SINE B2 -16 182 50 6 760 354 267 105 0 chr9 22990062 22990167 -101086005 - PB1D10 SINE Alu -1 116 1 6 760 1027 315 80 31 chr9 22990442 22991146 -101085026 + Charlie1a DNA MER1_type 620 1357 -98 6 760 502 312 31 0 chr9 22991948 22992076 -101084096 + ID_B1 SINE B4 82 213 -11 6 760 39 0 0 0 chr9 22994500 22994539 -101081633 + AT_rich Low_complexity Low_complexity 1 39 0 6 760 637 299 42 55 chr9 22998505 22998738 -101077434 + B4A SINE B4 1 230 -62 6 760 564 271 49 0 chr9 22998738 22998882 -101077290 + RSINE1 SINE B4 3 153 -12 6 760 525 110 0 0 chr9 22998891 22998982 -101077190 + (CA)n Simple_repeat Simple_repeat 2 92 0 6 760 255 31 0 0 chr9 22999084 22999116 -101077056 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 760 692 302 104 98 chr9 22999376 22999867 -101076305 + MLT1F2 LTR MaLR 66 559 -1 6 760 554 314 65 38 chr9 23000218 23000509 -101075663 + LTR82B Low_complexity ERVL 531 829 -1 1 760 421 356 64 39 chr9 23001429 23001663 -101074509 + MER74B LTR ERVL 270 509 -113 2 760 230 299 118 17 chr9 23001773 23001883 -101074289 + MLT1H LTR MaLR 374 495 -54 3 760 537 302 122 36 chr9 23001883 23002268 -101073904 + LTR37A LTR ERV1 1 418 -8 4 760 243 0 0 0 chr9 23002287 23002314 -101073858 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 760 29 0 0 0 chr9 23002499 23002528 -101073644 + AT_rich Low_complexity Low_complexity 1 29 0 6 760 335 300 38 8 chr9 23002583 23002714 -101073458 - B1F SINE Alu -8 141 7 7 760 693 151 14 14 chr9 23003885 23004033 -101072139 + GA-rich Low_complexity Low_complexity 2 149 0 8 760 1926 209 53 5 chr9 23004183 23004582 -101071590 - MTD LTR MaLR 0 419 2 9 760 301 153 28 0 chr9 23004649 23004721 -101071451 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 760 25 0 0 0 chr9 23006666 23006691 -101069481 + AT_rich Low_complexity Low_complexity 1 25 0 1 760 222 37 0 0 chr9 23006811 23006838 -101069334 + (T)n Simple_repeat Simple_repeat 1 27 0 1 760 208 268 0 0 chr9 23007362 23007418 -101068754 + L2b LINE L2 3320 3375 0 1 760 623 307 68 48 chr9 23009140 23009634 -101066538 + MLT1G3 LTR MaLR 29 552 -43 1 760 202 278 117 42 chr9 23010345 23010465 -101065707 + MIRb SINE MIR 72 200 -68 1 760 261 0 0 0 chr9 23010626 23010655 -101065517 + (T)n Simple_repeat Simple_repeat 1 29 0 1 760 1617 220 65 13 chr9 23010655 23011042 -101065130 + MTD LTR MaLR 13 419 0 1 760 372 321 127 29 chr9 23011738 23011911 -101064261 + Tigger5 DNA MER2_type 47 236 -2170 1 760 283 284 19 6 chr9 23011918 23012059 -101064113 + Tigger5 DNA MER2_type 2178 2406 0 1 760 377 287 54 65 chr9 23012059 23012221 -101063951 - MER45A DNA Tip100 -12 166 7 1 760 22 0 0 0 chr9 23014058 23014080 -101062092 + AT_rich Low_complexity Low_complexity 1 22 0 2 760 306 0 0 0 chr9 23014301 23014335 -101061837 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 760 300 232 43 26 chr9 23014956 23015071 -101061101 + MER3 DNA MER1_type 20 136 -73 2 760 357 165 24 0 chr9 23015505 23015590 -101060582 - Lx9 LINE L1 -7 7637 7551 2 760 4204 83 52 0 chr9 23015799 23016391 -101059781 - L1_Mus3 LINE L1 -3 6635 6013 2 760 287 247 50 40 chr9 23016663 23016764 -101059408 - B3A SINE B2 0 198 97 2 760 187 325 77 13 chr9 23017569 23017647 -101058525 - MER5A DNA MER1_type -41 148 66 2 760 22 0 0 0 chr9 23019463 23019485 -101056687 + AT_rich Low_complexity Low_complexity 1 22 0 2 760 22 0 0 0 chr9 23020303 23020325 -101055847 + AT_rich Low_complexity Low_complexity 1 22 0 2 760 1217 55 0 0 chr9 23020554 23020700 -101055472 - B1_Mm SINE Alu -1 146 1 2 760 333 93 0 0 chr9 23020799 23020853 -101055319 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 760 431 231 29 9 chr9 23021033 23021138 -101055034 + PB1D9 SINE Alu 1 107 -13 3 760 240 35 0 0 chr9 23021140 23021169 -101055003 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 760 549 311 84 65 chr9 23021311 23021586 -101054586 - B4A SINE B4 -8 284 5 3 760 1099 213 10 0 chr9 23021654 23021861 -101054311 - B3 SINE B2 -6 210 2 3 760 441 0 0 0 chr9 23022007 23022056 -101054116 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 760 337 269 56 0 chr9 23022270 23022378 -101053794 - L1M3 LINE L1 -378 5793 5680 3 760 344 311 36 15 chr9 23022406 23022543 -101053629 + B4A SINE B4 5 144 -148 3 760 594 0 0 0 chr9 23024599 23024665 -101051507 + (CAAAC)n Simple_repeat Simple_repeat 1 66 0 3 760 249 159 0 0 chr9 23025386 23025430 -101050742 + CT-rich Low_complexity Low_complexity 2 45 0 3 760 208 280 192 39 chr9 23031272 23031402 -101044770 - MIRb SINE MIR -30 238 89 4 760 558 0 0 0 chr9 23032521 23032583 -101043589 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 760 204 254 16 0 chr9 23033687 23033750 -101042422 + (TTA)n Simple_repeat Simple_repeat 3 66 0 4 760 528 269 69 0 chr9 23035790 23035935 -101040237 - B3 SINE B2 -46 170 16 4 760 22 0 0 0 chr9 23036651 23036673 -101039499 + AT_rich Low_complexity Low_complexity 1 22 0 4 760 373 258 0 0 chr9 23037322 23037415 -101038757 - MER2B DNA MER2_type -64 272 180 4 760 493 233 91 91 chr9 23040751 23040949 -101035223 - B3A SINE B2 0 198 1 4 760 339 252 61 34 chr9 23041324 23041472 -101034700 + Tigger14a DNA MER2_type 84 235 -89 4 760 450 0 0 0 chr9 23043136 23043186 -101032986 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 760 783 0 0 0 chr9 23044735 23044822 -101031350 + (TTC)n Simple_repeat Simple_repeat 3 89 0 4 760 1355 91 0 0 chr9 23044824 23045000 -101031172 - B2_Mm2 SINE B2 -19 176 1 5 760 203 373 36 0 chr9 23045101 23045211 -101030961 + L2a LINE L2 2326 2439 -980 5 760 621 262 23 86 chr9 23045387 23045562 -101030610 + RSINE1 SINE B4 2 165 0 5 760 249 274 65 121 chr9 23045562 23045586 -101030586 + B2_Mm2 SINE B2 1 188 -7 5 760 900 225 69 15 chr9 23045589 23045792 -101030380 + B3 SINE B2 3 216 0 5 760 231 36 0 0 chr9 23045841 23045869 -101030303 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 5 760 185 323 107 19 chr9 23046188 23046393 -101029779 + L2a LINE L2 3196 3418 -8 5 760 180 0 0 0 chr9 23046606 23046626 -101029546 + (CAT)n Simple_repeat Simple_repeat 1 20 0 5 760 565 309 52 39 chr9 23046644 23046876 -101029296 + Tigger5 DNA MER2_type 1 235 -2171 5 760 329 281 56 56 chr9 23047495 23047638 -101028534 + L2b LINE L2 3241 3422 -4 5 760 25 65 0 0 chr9 23048955 23049001 -101027171 + AT_rich Low_complexity Low_complexity 1 46 0 5 760 852 137 0 0 chr9 23049016 23049155 -101027017 + (TC)n Simple_repeat Simple_repeat 1 139 0 6 760 2257 175 63 4 chr9 23049155 23049614 -101026558 - Lx9 LINE L1 -35 7609 7124 6 760 1588 23 0 0 chr9 23052346 23052522 -101023650 + B2_Mm1a SINE B2 2 177 -16 6 760 336 48 0 0 chr9 23052526 23052568 -101023604 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 6 760 257 208 0 14 chr9 23056983 23057056 -101019116 + GA-rich Low_complexity Low_complexity 1 72 0 6 760 2702 305 45 29 chr9 23060274 23061502 -101014670 - Lx8 LINE L1 -2 7471 6193 6 760 564 15 0 0 chr9 23061504 23061569 -101014603 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 760 522 219 29 35 chr9 23061585 23061732 -101014440 - L1_Rod LINE L1 -632 5659 5474 6 760 459 0 0 0 chr9 23061766 23061817 -101014355 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 760 318 284 139 64 chr9 23061817 23062199 -101013973 - Lx8 LINE L1 -1310 6163 5764 6 760 2484 287 77 70 chr9 23062187 23062373 -101013799 - Lx8 LINE L1 -342 5538 5335 6 760 636 14 0 0 chr9 23062373 23062446 -101013726 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 6 760 2484 287 77 70 chr9 23062446 23062500 -101013672 - Lx8 LINE L1 -546 5334 5260 6 760 243 0 0 0 chr9 23062500 23062527 -101013645 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 760 2484 287 77 70 chr9 23062527 23063705 -101012467 - Lx8 LINE L1 -621 5259 4112 6 760 531 271 136 7 chr9 23063981 23064332 -101011840 + L1M2 LINE L1 2957 3365 -2515 7 760 744 232 21 26 chr9 23064372 23064464 -101011708 - B3 SINE B2 -13 203 110 7 760 4188 44 0 65 chr9 23064464 23065019 -101011153 - MURVY-LTR LTR ERV1 0 519 1 7 760 744 232 21 26 chr9 23065019 23065116 -101011056 - B3 SINE B2 -107 109 15 7 760 621 261 130 50 chr9 23065122 23065220 -101010952 + L1M2 LINE L1 3392 3498 -2645 7 760 204 67 0 0 chr9 23065220 23065250 -101010922 + (CTAA)n Simple_repeat Simple_repeat 4 33 0 7 760 621 261 130 50 chr9 23065250 23065574 -101010598 + L1M2 LINE L1 3499 3848 -2295 7 761 2545 148 36 22 chr9 23069499 23069914 -101006258 + MTC LTR MaLR 1 421 0 7 761 488 285 24 43 chr9 23070372 23070581 -101005591 - RMER10B LTR ERVL 0 398 194 7 761 681 236 82 21 chr9 23070595 23070876 -101005296 - RMER10A LTR ERVL -144 298 1 7 761 193 111 0 62 chr9 23071924 23071972 -101004200 + A-rich Low_complexity Low_complexity 4 48 0 7 761 273 303 11 22 chr9 23072610 23072701 -101003471 - MLT1E1 LTR MaLR -150 504 415 7 761 184 279 93 0 chr9 23074022 23074108 -101002064 + MIRc SINE MIR 31 124 -144 8 761 612 261 108 25 chr9 23074280 23074595 -101001577 - L1MB4 LINE L1 -110 6070 5730 8 761 748 270 90 50 chr9 23075674 23076052 -101000120 + L1MD2 LINE L1 4634 5026 -1120 8 761 310 255 10 30 chr9 23076224 23076325 -100999847 + L1MD2 LINE L1 5031 5129 -1017 8 761 761 301 91 69 chr9 23076428 23077155 -100999017 + L1MD2 LINE L1 5342 6084 -275 8 761 372 22 0 0 chr9 23077166 23077211 -100998961 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 761 291 299 0 0 chr9 23077211 23077298 -100998874 + L1MD2 LINE L1 6163 6249 -110 8 761 25 0 0 0 chr9 23077338 23077363 -100998809 + AT_rich Low_complexity Low_complexity 1 25 0 8 761 678 249 11 11 chr9 23081015 23081202 -100994970 - URR1B DNA MER1_type -2 223 37 8 761 249 326 14 28 chr9 23081285 23081427 -100994745 - MER20 DNA MER1_type -47 172 33 8 761 236 328 61 9 chr9 23081782 23081896 -100994276 + MIR3 SINE MIR 50 169 -39 8 761 38721 31 1 0 chr9 23082150 23088819 -100987353 - L1Md_T LINE L1 0 6585 1 8 761 295 246 97 0 chr9 23088828 23088942 -100987230 + Charlie10 DNA MER1_type 2697 2821 -1 8 761 41009 34 7 10 chr9 23091137 23097558 -100978614 - L1Md_T LINE L1 0 6585 41 9 761 939 188 113 5 chr9 23098221 23098424 -100977748 - URR1B DNA MER1_type 0 225 1 9 761 415 311 38 56 chr9 23098732 23098892 -100977280 + RSINE1 SINE B4 3 159 -6 9 761 646 200 64 0 chr9 23100811 23100951 -100975221 + ID_B1 SINE B4 76 224 0 9 761 216 237 17 17 chr9 23101091 23101151 -100975021 - MIR3 SINE MIR -35 173 114 9 761 441 0 0 0 chr9 23104663 23104712 -100971460 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 761 21 0 0 0 chr9 23107507 23107528 -100968644 + AT_rich Low_complexity Low_complexity 1 21 0 9 761 468 298 89 80 chr9 23107951 23108287 -100967885 - MER2 DNA MER2_type -6 339 1 9 761 250 347 7 7 chr9 23108287 23108438 -100967734 + (TA)n Simple_repeat Simple_repeat 2 152 0 9 761 560 101 0 11 chr9 23108714 23108804 -100967368 + (TC)n Simple_repeat Simple_repeat 2 90 0 9 761 570 171 23 14 chr9 23109508 23109729 -100966443 + (TCTA)n Simple_repeat Simple_repeat 1 223 0 1 761 21 0 0 0 chr9 23109863 23109884 -100966288 + AT_rich Low_complexity Low_complexity 1 21 0 1 761 200 306 158 29 chr9 23112427 23112636 -100963536 - MIRb SINE MIR -11 257 22 1 761 636 50 0 0 chr9 23113833 23113913 -100962259 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 761 25 51 0 0 chr9 23113992 23114031 -100962141 + AT_rich Low_complexity Low_complexity 1 39 0 1 761 25 0 0 0 chr9 23114173 23114198 -100961974 + AT_rich Low_complexity Low_complexity 1 25 0 1 761 29 47 0 0 chr9 23114231 23114274 -100961898 + AT_rich Low_complexity Low_complexity 1 43 0 1 761 319 177 14 151 chr9 23114590 23114663 -100961509 + ID4_ SINE ID 2 64 -19 1 761 252 341 11 0 chr9 23114670 23114761 -100961411 + GA-rich Low_complexity Low_complexity 4 95 0 1 761 185 321 0 0 chr9 23115258 23115311 -100960861 + L2b LINE L2 3319 3371 -4 1 761 189 147 0 0 chr9 23115950 23115984 -100960188 + (A)n Simple_repeat Simple_repeat 1 34 0 1 761 210 236 0 0 chr9 23116384 23116439 -100959733 + GA-rich Low_complexity Low_complexity 3 57 0 1 761 21 36 0 0 chr9 23117087 23117115 -100959057 + AT_rich Low_complexity Low_complexity 1 28 0 1 761 351 219 123 19 chr9 23118270 23118377 -100957795 - PB1D7 SINE Alu -12 137 6 1 761 696 267 87 18 chr9 23118700 23118986 -100957186 - MER33 DNA MER1_type -2 322 17 1 761 564 299 42 5 chr9 23119201 23119393 -100956779 + L2a LINE L2 2949 3147 -279 1 761 1284 277 81 27 chr9 23120885 23121367 -100954805 - Lx8 LINE L1 -3 7470 6963 1 761 842 139 0 19 chr9 23121371 23121532 -100954640 + (TG)n Simple_repeat Simple_repeat 1 158 0 1 761 395 216 118 25 chr9 23121542 23121661 -100954511 - Lx8 LINE L1 -572 6901 6772 1 761 389 198 0 140 chr9 23122067 23122166 -100954006 - B3A SINE B2 -3 195 111 1 761 1071 119 67 6 chr9 23122166 23122344 -100953828 - URR1A DNA MER1_type 0 226 38 1 761 399 259 9 9 chr9 23122805 23122914 -100953258 + L1MC4 LINE L1 7566 7674 -368 1 761 968 221 57 61 chr9 23123079 23123325 -100952847 - Lx8 LINE L1 -241 7232 6988 1 761 943 182 193 0 chr9 23123338 23123519 -100952653 - B3 SINE B2 0 216 1 1 761 360 0 0 0 chr9 23123621 23123661 -100952511 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 761 432 55 0 0 chr9 23123662 23123717 -100952455 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 761 23 0 0 0 chr9 23124249 23124272 -100951900 + AT_rich Low_complexity Low_complexity 1 23 0 1 761 1171 263 48 24 chr9 23124555 23124972 -100951200 - L1M4 LINE L1 -2118 4526 4100 1 761 229 233 16 62 chr9 23125031 23125095 -100951077 - tRNA-Ala-GCG tRNA tRNA -14 61 1 1 761 440 275 22 58 chr9 23125110 23125249 -100950923 - B1F SINE Alu -1 148 15 1 761 344 307 112 96 chr9 23125342 23125836 -100950336 - RLTR17 LTR ERVK -160 532 79 1 761 231 103 0 0 chr9 23125958 23125997 -100950175 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 761 1309 46 5 5 chr9 23126068 23126288 -100949884 + (TCTA)n Simple_repeat Simple_repeat 1 220 0 1 761 1375 271 69 6 chr9 23126288 23126651 -100949521 + MTD LTR MaLR 17 402 -17 1 761 1212 322 45 2 chr9 23126665 23127085 -100949087 - Lx9 LINE L1 -660 6984 6547 1 761 335 259 135 36 chr9 23127139 23127391 -100948781 - L1M4 LINE L1 -3224 3414 3138 1 761 521 292 113 29 chr9 23127477 23127752 -100948420 - L1M4 LINE L1 -5658 884 587 1 761 21 36 0 0 chr9 23127830 23127858 -100948314 + AT_rich Low_complexity Low_complexity 1 28 0 1 761 618 253 132 35 chr9 23128238 23128435 -100947737 - B3 SINE B2 0 216 1 1 761 344 287 50 0 chr9 23128574 23128675 -100947497 + MLT1A0 LTR MaLR 245 350 -15 1 761 270 167 12 23 chr9 23129064 23129150 -100947022 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 761 302 340 95 45 chr9 23129160 23129195 -100946977 - L1MC LINE L1 -2157 5725 5690 1 761 197 83 28 0 chr9 23129195 23129231 -100946941 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1 761 302 340 95 45 chr9 23129231 23129417 -100946755 - L1MC LINE L1 -2193 5689 5493 1 761 309 337 10 19 chr9 23129488 23129591 -100946581 - PB1D10 SINE Alu -6 111 10 1 761 242 283 43 11 chr9 23131207 23131300 -100944872 - Kanga2_a DNA Tc2 -43 845 750 1 761 407 341 0 11 chr9 23133494 23133675 -100942497 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 761 231 329 0 0 chr9 23133705 23133790 -100942382 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 761 519 307 0 16 chr9 23133813 23133995 -100942177 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 761 276 179 0 29 chr9 23134728 23134797 -100941375 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 1 761 570 330 80 15 chr9 23134806 23135080 -100941092 - B4A SINE B4 0 292 1 1 761 760 325 31 0 chr9 23135219 23135413 -100940759 - B4 SINE B4 -91 201 2 1 761 661 322 73 10 chr9 23136359 23136563 -100939609 + B4A SINE B4 4 220 -72 1 761 270 81 0 0 chr9 23136563 23136600 -100939572 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 1 761 195 42 0 0 chr9 23136803 23136827 -100939345 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 761 483 18 0 0 chr9 23136827 23136882 -100939290 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 761 321 265 12 35 chr9 23137641 23137727 -100938445 + MIR SINE MIR 76 159 -103 1 761 477 0 0 0 chr9 23138243 23138296 -100937876 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 761 329 342 6 82 chr9 23138426 23138585 -100937587 - RSINE1 SINE B4 -1 164 18 1 761 535 287 57 94 chr9 23139512 23139843 -100936329 + ORR1E LTR MaLR 37 355 -4 1 761 180 0 0 0 chr9 23141265 23141285 -100934887 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 1 761 226 250 0 0 chr9 23141535 23141583 -100934589 + CT-rich Low_complexity Low_complexity 2 49 0 1 761 180 0 0 0 chr9 23143619 23143639 -100932533 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 761 32 26 0 0 chr9 23144424 23144463 -100931709 + AT_rich Low_complexity Low_complexity 1 39 0 1 761 3134 286 55 83 chr9 23144467 23145763 -100930409 - Lx5 LINE L1 -32 7018 5759 1 761 507 118 0 0 chr9 23146598 23146683 -100929489 + (CTAA)n Simple_repeat Simple_repeat 3 87 0 1 761 32 67 0 0 chr9 23146790 23146850 -100929322 + AT_rich Low_complexity Low_complexity 1 60 0 1 761 1862 288 141 34 chr9 23150195 23151506 -100924666 + Charlie1a DNA MER1_type 1 1455 0 1 761 462 114 0 0 chr9 23152936 23153015 -100923157 + (CATAT)n Simple_repeat Simple_repeat 1 79 0 1 761 342 280 59 20 chr9 23153091 23153193 -100922979 - PB1D7 SINE Alu -1 119 14 1 761 401 304 134 27 chr9 23153253 23153439 -100922733 - Charlie12 DNA MER1_type -2661 212 7 1 761 487 315 34 15 chr9 23154672 23154878 -100921294 - Lx9 LINE L1 -620 7024 6815 1 761 324 0 0 0 chr9 23155357 23155393 -100920779 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 761 932 150 0 20 chr9 23156227 23156377 -100919795 - B1_Mus1 SINE Alu -1 147 1 1 761 255 284 49 0 chr9 23157145 23157226 -100918946 - ORR1E LTR MaLR -274 85 1 1 761 486 49 0 0 chr9 23158563 23158624 -100917548 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 761 696 24 0 0 chr9 23159350 23159432 -100916740 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 761 324 0 0 0 chr9 23159499 23159535 -100916637 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 761 277 298 66 37 chr9 23160870 23161006 -100915166 + MLT1D LTR MaLR 28 167 -338 1 761 1093 266 110 6 chr9 23160999 23161335 -100914837 - MTEb LTR MaLR -5 374 4 1 761 857 269 66 45 chr9 23161343 23161678 -100914494 + MLT1D LTR MaLR 164 505 0 1 761 1336 34 0 0 chr9 23163121 23163268 -100912904 + B1_Mus2 SINE Alu 1 147 0 1 761 189 0 0 0 chr9 23163268 23163289 -100912883 + (A)n Simple_repeat Simple_repeat 1 21 0 1 761 268 350 135 17 chr9 23166374 23166524 -100909648 - MLT1J1 LTR MaLR -193 255 86 1 761 948 100 0 0 chr9 23166672 23166832 -100909340 + (GA)n Simple_repeat Simple_repeat 2 161 0 1 761 1827 236 47 41 chr9 23166832 23167287 -100908885 + Lx6 LINE L1 6911 7376 -84 1 761 258 116 0 0 chr9 23167287 23167330 -100908842 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 761 594 0 0 0 chr9 23167335 23167401 -100908771 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 761 1827 236 47 41 chr9 23167401 23167430 -100908742 + Lx6 LINE L1 7377 7404 -56 1 761 282 56 0 0 chr9 23168472 23168508 -100907664 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 1 761 1207 75 0 0 chr9 23169417 23169564 -100906608 - B1_Mus2 SINE Alu 0 147 1 1 761 256 375 18 101 chr9 23171347 23171623 -100904549 - LTR85c LTR Gypsy? -211 612 332 1 761 388 318 9 0 chr9 23173162 23173272 -100902900 - PB1D10 SINE Alu -6 111 1 1 761 2588 316 90 45 chr9 23173462 23174490 -100901682 - Lx8 LINE L1 -221 7252 6190 1 761 603 33 22 11 chr9 23174490 23174581 -100901591 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 761 2588 303 94 58 chr9 23174581 23175611 -100900561 - Lx8 LINE L1 -1284 6189 5146 1 761 264 221 112 84 chr9 23175613 23175756 -100900416 + L1_Mur3 LINE L1 2786 2932 -2948 1 761 243 0 0 0 chr9 23175765 23175792 -100900380 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 761 613 208 11 0 chr9 23176095 23176273 -100899899 + CT-rich Low_complexity Low_complexity 1 180 0 1 761 381 207 114 11 chr9 23176276 23176364 -100899808 - B1_Mus2 SINE Alu -5 142 46 1 761 409 327 80 6 chr9 23176393 23176556 -100899616 + B4A SINE B4 106 280 -12 1 761 552 126 0 0 chr9 23176558 23176645 -100899527 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 761 909 291 108 12 chr9 23177492 23177816 -100898356 - MLT1A0 LTR MaLR -10 355 1 1 761 1099 271 29 88 chr9 23179142 23179550 -100896622 - ORR1C2 LTR MaLR 0 384 1 1 761 1205 146 10 48 chr9 23184331 23184540 -100891632 + URR1A DNA MER1_type 7 207 -19 1 761 222 284 57 43 chr9 23184737 23184877 -100891295 + MIRb SINE MIR 97 238 -30 1 761 23 0 0 0 chr9 23186926 23186949 -100889223 + AT_rich Low_complexity Low_complexity 1 23 0 1 761 427 260 260 0 chr9 23188354 23188508 -100887664 - MER20 DNA MER1_type 0 219 26 1 761 294 29 0 0 chr9 23189478 23189513 -100886659 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 761 201 317 35 39 chr9 23191090 23191227 -100884945 - MIRb SINE MIR -4 258 117 2 761 303 71 0 0 chr9 23191990 23192032 -100884140 + (ATG)n Simple_repeat Simple_repeat 2 43 0 2 761 1413 67 0 111 chr9 23192056 23192276 -100883896 + L1Md_F2 LINE L1 6375 6582 0 2 761 1413 67 0 111 chr9 23192276 23192311 -100883861 + L1Md_F2 LINE L1 6558 6582 0 2 761 1562 31 5 30 chr9 23192310 23192512 -100883660 + L1Md_F2 LINE L1 6382 6578 -4 2 761 30 45 0 0 chr9 23193481 23193525 -100882647 + AT_rich Low_complexity Low_complexity 1 44 0 2 761 1805 328 87 24 chr9 23193650 23194608 -100881564 - Lx8 LINE L1 -50 7423 6406 2 761 521 125 226 19 chr9 23195968 23196074 -100880098 + B1_Mur2 SINE Alu 21 148 -1 2 761 423 137 0 0 chr9 23196222 23196295 -100879877 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 2 761 347 268 225 0 chr9 23196295 23196437 -100879735 + HAL1-3A_ME LINE L1 2284 2457 -401 2 761 1130 108 0 26 chr9 23196565 23196717 -100879455 - B1_Mus1 SINE Alu 0 148 1 2 761 395 156 25 25 chr9 23196786 23196865 -100879307 - RLTR31A_Mm LTR ERVK 0 557 479 2 761 1634 114 31 0 chr9 23196874 23197129 -100879043 - RLTR31A_Mm LTR ERVK -321 263 1 2 761 961 248 42 4 chr9 23197504 23197743 -100878429 - MLT1D LTR MaLR -2 503 256 2 761 281 210 222 0 chr9 23198606 23198687 -100877485 + B4A SINE B4 114 212 -80 2 761 281 155 17 0 chr9 23198804 23198862 -100877310 + (TATG)n Simple_repeat Simple_repeat 4 62 0 2 762 363 23 0 0 chr9 23199873 23199917 -100876255 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 762 204 149 0 0 chr9 23200384 23200431 -100875741 + (A)n Simple_repeat Simple_repeat 1 47 0 2 762 306 0 0 0 chr9 23201382 23201416 -100874756 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 762 321 291 38 19 chr9 23202761 23202866 -100873306 - PB1D9 SINE Alu 0 120 14 2 762 30 0 0 0 chr9 23202973 23203003 -100873169 + AT_rich Low_complexity Low_complexity 1 30 0 2 762 651 286 0 13 chr9 23203167 23203316 -100872856 + B3A SINE B2 1 147 -51 2 762 494 108 0 12 chr9 23203316 23203400 -100872772 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 762 225 0 0 0 chr9 23204177 23204202 -100871970 + (CAG)n Simple_repeat Simple_repeat 1 25 0 2 762 333 0 0 0 chr9 23205417 23205454 -100870718 + (T)n Simple_repeat Simple_repeat 1 37 0 2 762 369 0 0 0 chr9 23208392 23208433 -100867739 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 762 1197 73 11 6 chr9 23208782 23208961 -100867211 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 762 1259 78 0 11 chr9 23208984 23209166 -100867006 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 762 332 318 51 57 chr9 23209167 23209324 -100866848 - HAL1-3A_ME LINE L1 -419 2439 2284 2 762 306 0 0 0 chr9 23209324 23209358 -100866814 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 2 762 200 79 0 50 chr9 23210086 23210126 -100866046 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 762 359 145 14 0 chr9 23214191 23214260 -100861912 + GA-rich Low_complexity Low_complexity 1 70 0 2 762 29 47 0 0 chr9 23215378 23215421 -100860751 + AT_rich Low_complexity Low_complexity 1 43 0 2 762 5834 258 48 36 chr9 23215546 23216056 -100860116 - Lx7 LINE L1 -372 7324 6797 2 762 1742 193 86 25 chr9 23216056 23216418 -100859754 - ORR1C2 LTR MaLR 0 384 1 2 762 16948 241 50 39 chr9 23216418 23217973 -100858199 - Lx7 LINE L1 -900 6796 5276 2 762 1113 82 0 58 chr9 23217973 23218129 -100858043 - B1_Mus1 SINE Alu 0 148 2 2 762 16948 218 52 44 chr9 23218129 23220404 -100855768 - Lx7 LINE L1 -605 5275 2905 2 762 191 36 36 0 chr9 23220404 23220432 -100855740 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 762 16948 218 52 44 chr9 23220432 23220673 -100855499 - Lx7 LINE L1 -2976 2904 2663 2 762 2967 58 3 0 chr9 23220673 23221018 -100855154 - ORR1A1 LTR MaLR 0 346 1 2 762 16948 232 53 39 chr9 23221018 23222753 -100853419 - Lx7 LINE L1 -3218 2662 913 2 762 1030 168 184 0 chr9 23222904 23223094 -100853078 + URR1B DNA MER1_type 1 225 0 2 762 180 0 0 0 chr9 23223202 23223222 -100852950 + (T)n Simple_repeat Simple_repeat 1 20 0 2 762 228 67 0 0 chr9 23223976 23224006 -100852166 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 762 1166 244 98 35 chr9 23224336 23224713 -100851459 - MTD LTR MaLR 0 419 19 2 762 1787 219 38 19 chr9 23224810 23225182 -100850990 - MTC LTR MaLR -10 411 33 2 762 304 362 47 21 chr9 23227741 23227975 -100848197 + L4 LINE RTE 1785 2024 -5 2 762 180 0 0 0 chr9 23229716 23229736 -100846436 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 762 246 312 62 8 chr9 23230929 23231058 -100845114 - MIRb SINE MIR -130 138 3 2 762 432 225 0 0 chr9 23231176 23231247 -100844925 - ID4 SINE ID -10 73 3 2 762 349 364 0 0 chr9 23232308 23232407 -100843765 - Tigger7 DNA MER2_type -3 2488 2390 2 762 21 36 0 0 chr9 23232776 23232804 -100843368 + AT_rich Low_complexity Low_complexity 1 28 0 2 762 431 107 13 0 chr9 23232806 23232881 -100843291 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 762 607 272 15 0 chr9 23232883 23233019 -100843153 - RSINE1 SINE B4 -22 143 6 2 762 495 64 9 52 chr9 23233317 23233339 -100842833 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 762 1180 79 0 0 chr9 23233339 23233479 -100842693 + B1_Mm SINE Alu 1 140 -7 2 762 495 64 9 52 chr9 23233479 23233571 -100842601 + (CAAAA)n Simple_repeat Simple_repeat 1 88 0 2 762 713 168 0 122 chr9 23233571 23233727 -100842445 - B1_Mus2 SINE Alu -4 143 7 2 762 206 256 0 0 chr9 23234562 23234601 -100841571 - MER5A DNA MER1_type -70 119 81 2 762 211 330 178 23 chr9 23234940 23235154 -100841018 - L2a LINE L2 -257 3169 2923 2 762 186 103 0 0 chr9 23236068 23236097 -100840075 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 2 762 211 213 0 21 chr9 23236180 23236228 -100839944 - RSINE1 SINE B4 -116 49 3 2 762 194 223 63 120 chr9 23236346 23236442 -100839730 + L2c LINE L2 3234 3350 -37 2 762 341 299 35 0 chr9 23238218 23238305 -100837867 - B4A SINE B4 -85 207 118 2 762 254 229 0 0 chr9 23238705 23238766 -100837406 - MLT1A1 LTR MaLR -12 396 336 2 762 222 37 0 0 chr9 23239331 23239358 -100836814 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2 762 1554 58 11 0 chr9 23239364 23239554 -100836618 + B2_Mm1t SINE B2 2 193 0 2 762 897 275 6 6 chr9 23240439 23240622 -100835550 + B4A SINE B4 24 206 -86 2 762 234 0 0 0 chr9 23240622 23240648 -100835524 + (A)n Simple_repeat Simple_repeat 1 26 0 2 762 402 147 0 0 chr9 23240722 23240790 -100835382 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 762 271 344 60 45 chr9 23240791 23240925 -100835247 - ORR1E LTR MaLR -222 137 2 2 762 236 334 91 27 chr9 23241741 23241931 -100834241 + MIR SINE MIR 61 258 -4 2 762 863 135 7 14 chr9 23245181 23245324 -100830848 - B1_Mur4 SINE Alu 0 150 9 2 762 393 192 66 81 chr9 23245208 23245344 -100830828 - MT2B LTR ERVL -323 278 145 2 762 513 287 26 0 chr9 23245673 23245788 -100830384 - B1F SINE Alu -1 148 31 2 762 1258 73 6 6 chr9 23247867 23248047 -100828125 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 762 319 282 49 7 chr9 23248066 23248209 -100827963 - L1MB5 LINE L1 0 6178 6030 2 762 285 235 82 0 chr9 23248247 23248358 -100827814 - L1MB5 LINE L1 -206 5965 5848 2 762 3931 224 33 21 chr9 23248366 23249757 -100826415 - RMER1A Other Other -10 1020 1 2 762 1476 297 37 71 chr9 23249768 23250330 -100825842 - RMER1B Other Other -515 551 9 2 762 406 268 111 40 chr9 23250631 23250829 -100825343 - L1MB5 LINE L1 -315 5859 5648 2 762 449 234 137 46 chr9 23250840 23251037 -100825135 - L1M5 LINE L1 -583 5596 5382 2 762 261 364 30 24 chr9 23252785 23252954 -100823218 + MLT2D LTR ERVL 3 172 -242 2 762 277 276 46 0 chr9 23252988 23253075 -100823097 + MLT2D LTR ERVL 409 499 -61 2 762 1644 213 32 26 chr9 23254692 23255000 -100821172 + Lx5 LINE L1 6664 6973 -77 2 762 811 188 21 0 chr9 23255659 23255803 -100820369 + B1_Mus1 SINE Alu 1 147 -1 2 762 237 65 0 0 chr9 23255813 23255844 -100820328 + (GGA)n Simple_repeat Simple_repeat 3 33 0 2 762 22 0 0 0 chr9 23256437 23256459 -100819713 + AT_rich Low_complexity Low_complexity 1 22 0 2 762 232 361 24 48 chr9 23256686 23256811 -100819361 - MER5A DNA MER1_type -7 182 61 2 762 338 184 70 44 chr9 23258633 23258747 -100817425 + Lx9 LINE L1 7520 7636 -8 2 762 308 277 50 11 chr9 23259339 23259518 -100816654 - L1M5 LINE L1 -2302 3844 3659 2 762 241 284 30 0 chr9 23259879 23259946 -100816226 + L2b LINE L2 3298 3366 -9 2 762 2203 110 61 10 chr9 23260184 23260497 -100815675 - ORR1A4 LTR MaLR 0 329 1 2 762 263 351 28 119 chr9 23262998 23263283 -100812889 + L3 LINE CR1 4164 4422 -67 2 762 3512 26 8 0 chr9 23263446 23263832 -100812340 + L1Md_F2 LINE L1 6190 6578 -4 2 762 185 345 103 0 chr9 23264741 23264828 -100811344 + MIR SINE MIR 3 98 -164 2 762 693 82 0 0 chr9 23265847 23265944 -100810228 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 2 762 364 265 20 0 chr9 23266201 23266299 -100809873 - L1MD1 LINE L1 -15 6227 6128 2 762 33 0 0 0 chr9 23266301 23266334 -100809838 + AT_rich Low_complexity Low_complexity 1 33 0 2 762 426 39 0 0 chr9 23266375 23266427 -100809745 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 762 265 205 56 133 chr9 23266456 23266546 -100809626 - B4 SINE B4 -194 98 16 2 762 427 302 126 11 chr9 23266943 23267117 -100809055 + MER21B LTR ERV1 215 408 -455 2 762 317 256 22 34 chr9 23269235 23269324 -100806848 + PB1D10 SINE Alu 7 94 -23 2 762 529 83 24 0 chr9 23270059 23270143 -100806029 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 762 241 243 0 67 chr9 23272245 23272320 -100803852 - PB1D10 SINE Alu 0 117 48 2 762 423 0 0 0 chr9 23272788 23272835 -100803337 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 762 261 0 0 0 chr9 23272835 23272863 -100803309 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 762 208 184 20 20 chr9 23272928 23272978 -100803194 + (TATG)n Simple_repeat Simple_repeat 3 52 0 2 762 192 111 0 0 chr9 23273301 23273337 -100802835 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 762 38 0 0 0 chr9 23273770 23273808 -100802364 + AT_rich Low_complexity Low_complexity 1 38 0 3 762 630 125 0 20 chr9 23273840 23273938 -100802234 + B1_Mur4 SINE Alu 55 150 0 3 762 360 234 84 42 chr9 23274413 23274556 -100801616 - MER83B-int LTR ERV1 -3474 1406 1258 3 762 558 321 21 11 chr9 23277525 23277714 -100798458 - MER3 DNA MER1_type -17 192 2 3 762 189 0 0 0 chr9 23278123 23278144 -100798028 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 3 762 196 380 108 27 chr9 23278767 23278989 -100797183 - L2 LINE L2 -337 3082 2843 3 762 22 80 0 0 chr9 23279936 23279986 -100796186 + AT_rich Low_complexity Low_complexity 1 50 0 3 762 6503 94 12 10 chr9 23279999 23280021 -100796151 - Lx2 LINE L1 0 6997 6980 3 762 966 144 7 0 chr9 23280021 23280167 -100796005 - B1_Mus1 SINE Alu 0 148 2 3 762 6503 94 12 10 chr9 23280167 23281080 -100795092 - Lx2 LINE L1 -18 6979 6060 3 762 225 0 0 0 chr9 23281089 23281114 -100795058 + (T)n Simple_repeat Simple_repeat 1 25 0 3 762 629 177 41 17 chr9 23281114 23281325 -100794847 - RLTR24 LTR ERV1 -89 440 322 3 762 750 185 8 12 chr9 23281355 23281613 -100794559 + (CA)n Simple_repeat Simple_repeat 1 256 0 3 762 457 240 126 81 chr9 23283453 23283558 -100792614 - HAL1-2a_MD LINE L1 -573 2451 2346 3 762 260 300 114 0 chr9 23283558 23283628 -100792544 - ID4_ SINE ID -5 78 1 3 762 457 240 126 81 chr9 23283628 23283744 -100792428 - HAL1-2a_MD LINE L1 -679 2345 2220 3 762 220 233 79 40 chr9 23284607 23284683 -100791489 + B4 SINE B4 2 80 -212 3 762 369 262 16 0 chr9 23284732 23284854 -100791318 + (CA)n Simple_repeat Simple_repeat 2 125 0 3 762 244 261 0 0 chr9 23284857 23284922 -100791250 + CT-rich Low_complexity Low_complexity 1 65 0 3 762 658 96 16 31 chr9 23284922 23285051 -100791121 + (TCTCCC)n Simple_repeat Simple_repeat 5 131 0 3 762 386 296 0 43 chr9 23286463 23286604 -100789568 + G-rich Low_complexity Low_complexity 1 135 0 3 762 3345 64 7 2 chr9 23287110 23287548 -100788624 + L1_Mus3 LINE L1 6199 6638 0 3 762 204 135 0 0 chr9 23288584 23288621 -100787551 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 762 21 0 0 0 chr9 23289678 23289699 -100786473 + AT_rich Low_complexity Low_complexity 1 21 0 3 762 21 57 0 0 chr9 23290637 23290672 -100785500 + AT_rich Low_complexity Low_complexity 1 35 0 3 762 279 54 0 0 chr9 23291321 23291358 -100784814 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 762 428 0 19 0 chr9 23292122 23292174 -100783998 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 762 432 0 0 0 chr9 23292392 23292440 -100783732 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 762 25 0 0 0 chr9 23294524 23294549 -100781623 + AT_rich Low_complexity Low_complexity 1 25 0 3 762 1958 197 46 62 chr9 23297388 23297950 -100778222 + RLTR31_Mur LTR ERVK 1 553 0 3 762 269 321 12 36 chr9 23298176 23298260 -100777912 - ID4 SINE ID 0 83 2 3 762 232 235 20 0 chr9 23298223 23298274 -100777898 - ZP3AR Satellite Satellite -131 81 30 3 762 946 278 140 31 chr9 23298791 23299084 -100777088 + MTE2b LTR MaLR 1 325 -54 3 762 426 214 81 25 chr9 23299138 23299335 -100776837 + Lx9 LINE L1 7411 7618 -26 3 762 770 207 89 25 chr9 23299373 23299576 -100776596 + B3 SINE B2 1 216 0 3 762 464 328 77 24 chr9 23299602 23299811 -100776361 + MLT1A1 LTR MaLR 70 289 -119 3 762 790 284 16 0 chr9 23300561 23300751 -100775421 + MER58A DNA MER1_type 28 220 -4 3 762 211 0 57 29 chr9 23300864 23300899 -100775273 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 762 878 218 104 0 chr9 23301152 23301354 -100774818 - MTEa LTR MaLR 0 379 157 3 762 672 234 113 6 chr9 23301588 23301756 -100774416 - MTEa LTR MaLR -193 186 1 3 762 379 329 88 18 chr9 23302033 23302203 -100773969 + MIRc SINE MIR 23 204 -64 3 762 513 213 0 11 chr9 23303470 23303565 -100772607 + MTD LTR MaLR 23 116 -303 3 762 535 214 34 0 chr9 23303565 23303682 -100772490 - L1M2 LINE L1 -1364 4779 4659 3 762 696 287 111 24 chr9 23303719 23304262 -100771910 + L1_Mur3 LINE L1 3132 3721 -2159 3 762 640 167 15 5 chr9 23304256 23304461 -100771711 + Lx5 LINE L1 999 1270 -5816 3 762 211 28 56 0 chr9 23304465 23304501 -100771671 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 762 945 215 46 1 chr9 23304527 23304810 -100771362 + Lx5 LINE L1 1211 1506 -4371 3 762 695 71 10 0 chr9 23304810 23304908 -100771264 + (AGGGGG)n Simple_repeat Simple_repeat 5 103 0 3 762 453 19 0 0 chr9 23304991 23305045 -100771127 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 762 19090 158 23 31 chr9 23305049 23305962 -100770210 + Lx5 LINE L1 2062 3000 -2877 3 762 913 115 65 0 chr9 23305962 23306101 -100770071 + B1_Mus1 SINE Alu 1 148 0 3 762 19090 152 24 28 chr9 23306101 23309089 -100767083 + Lx5 LINE L1 3001 5942 -1108 3 762 1115 256 40 48 chr9 23309087 23309464 -100766708 + Lx5 LINE L1 6674 7047 -3 3 762 1319 287 91 16 chr9 23309483 23310217 -100765955 + L1_Mur3 LINE L1 3716 4504 -1376 3 762 61 15 0 0 chr9 23310243 23310311 -100765861 + AT_rich Low_complexity Low_complexity 1 68 0 3 762 566 271 42 28 chr9 23310446 23310590 -100765582 - B3 SINE B2 -56 160 15 3 762 395 234 76 55 chr9 23310590 23310735 -100765437 - B3A SINE B2 -1 215 68 3 762 250 62 62 0 chr9 23310936 23310984 -100765188 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 762 238 310 47 65 chr9 23311681 23311850 -100764322 - L1MDa LINE L1 -6379 254 89 3 762 210 91 0 0 chr9 23312593 23312626 -100763546 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 3 762 1859 85 0 0 chr9 23312629 23312900 -100763272 - L1_Mm LINE L1 -1399 4484 4214 3 762 13575 55 12 1 chr9 23312906 23315383 -100760789 - L1Md_F2 LINE L1 -13 6569 4064 3 762 24 77 0 0 chr9 23315386 23315438 -100760734 + AT_rich Low_complexity Low_complexity 1 52 0 3 762 6832 132 57 43 chr9 23315438 23317052 -100759120 + L1VL2 LINE L1 127 1809 -1806 3 762 306 0 0 0 chr9 23317052 23317086 -100759086 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 762 6832 171 86 49 chr9 23317086 23318264 -100757908 + L1VL2 LINE L1 1810 2988 -627 3 762 947 160 6 0 chr9 23318352 23318527 -100757645 + CT-rich Low_complexity Low_complexity 2 177 0 3 762 257 308 21 42 chr9 23319107 23319202 -100756970 - MLT1F2 LTR MaLR -137 423 331 3 762 6628 109 35 9 chr9 23319273 23319396 -100756776 - Lx LINE L1 -1 6653 6535 3 762 396 0 0 0 chr9 23319396 23319440 -100756732 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 762 6628 122 29 9 chr9 23319440 23320659 -100755513 - Lx LINE L1 -120 6534 5287 3 762 3697 16 121 0 chr9 23320659 23321099 -100755073 - MT2_Mm LTR ERVL 0 493 1 3 762 6117 164 11 9 chr9 23321099 23321655 -100754517 - Lx LINE L1 -597 5286 4726 3 762 390 284 5 52 chr9 23321968 23322089 -100754083 - PB1D10 SINE Alu -29 120 5 3 762 406 295 16 85 chr9 23322519 23322708 -100753464 + RMER10A LTR ERVL 129 304 -138 3 762 257 299 30 40 chr9 23322969 23323070 -100753102 + MLT1A0 LTR MaLR 266 365 0 3 762 348 286 0 0 chr9 23324625 23324695 -100751477 + ID4 SINE ID 11 80 -3 3 762 303 277 60 0 chr9 23324695 23324708 -100751464 + ID_B1 SINE B4 11 98 -126 3 762 790 179 6 6 chr9 23324709 23324883 -100751289 + GA-rich Low_complexity Low_complexity 2 175 0 3 762 373 58 19 0 chr9 23325015 23325067 -100751105 - HAL1-3A_ME LINE L1 -831 2027 1975 3 762 458 209 0 7 chr9 23325067 23325202 -100750970 + (TG)n Simple_repeat Simple_repeat 1 134 0 3 762 1201 277 66 51 chr9 23325444 23325836 -100750336 - MTD LTR MaLR -14 405 8 3 762 1528 95 0 22 chr9 23325996 23326221 -100749951 - L1Md_F2 LINE L1 -8 6574 6355 3 762 4338 53 2 5 chr9 23326222 23326827 -100749345 - L1Md_F2 LINE L1 -437 6145 5579 3 762 3969 45 0 18 chr9 23326827 23327326 -100748846 - L1Md_F2 LINE L1 -2 6580 6091 3 762 4201 64 3 63 chr9 23327326 23327616 -100748556 - L1Md_F2 LINE L1 -305 5578 5288 3 95 33119 89 21 16 chr9 23327633 23333929 -100742243 - L1Md_F2 LINE L1 -14 6568 244 3 763 806 142 7 36 chr9 23333929 23334068 -100742104 - L1Md_F2 LINE L1 -6260 378 244 3 763 230 143 0 0 chr9 23334066 23334101 -100742071 - L1VL1 LINE L1 -6258 164 130 3 763 365 284 99 63 chr9 23334577 23334941 -100741231 + L1MEg LINE L1 1230 1606 -4478 3 763 439 288 152 73 chr9 23335126 23335441 -100740731 + MLT1A0 LTR MaLR 1 340 -34 3 763 1721 92 72 11 chr9 23335758 23336021 -100740151 - L1VL1 LINE L1 -6142 280 2 3 763 2759 80 4 131 chr9 23336021 23336480 -100739692 + L1Md_F2 LINE L1 6182 6582 0 3 763 28 29 0 0 chr9 23336800 23336835 -100739337 + AT_rich Low_complexity Low_complexity 1 35 0 3 763 1444 226 200 66 chr9 23336863 23337333 -100738839 + MT2A LTR ERVL 1 533 0 3 763 225 214 0 0 chr9 23337349 23337391 -100738781 - PB1 SINE Alu -64 63 22 3 763 760 340 60 48 chr9 23337646 23338150 -100738022 - Lx8 LINE L1 0 7473 6964 3 763 1030 263 84 58 chr9 23338211 23338570 -100737602 - Lx8 LINE L1 -694 6779 6412 3 763 1410 202 91 50 chr9 23340955 23341351 -100734821 - MTD LTR MaLR 0 419 8 3 763 303 306 20 10 chr9 23342522 23342621 -100733551 - MER94 DNA AcHobo -11 123 24 3 763 240 286 48 0 chr9 23343311 23343374 -100732798 + MIRb SINE MIR 107 172 -96 3 763 390 275 48 29 chr9 23343689 23343794 -100732378 + PB1D10 SINE Alu 10 116 -1 3 763 40 0 0 0 chr9 23343874 23343914 -100732258 + AT_rich Low_complexity Low_complexity 1 40 0 3 763 33 56 0 0 chr9 23344289 23344343 -100731829 + AT_rich Low_complexity Low_complexity 1 54 0 3 763 974 224 56 16 chr9 23344343 23344592 -100731580 - Lx6 LINE L1 -169 7291 7033 3 763 3552 200 52 9 chr9 23344611 23345286 -100730886 + Lx6 LINE L1 6334 7037 -423 3 763 247 310 0 0 chr9 23345301 23345372 -100730800 + MER103 DNA DNA 51 121 -45 3 763 251 329 109 7 chr9 23346322 23346469 -100729703 + MIR SINE MIR 60 221 -41 3 763 260 281 48 19 chr9 23346511 23346616 -100729556 - MLT1H2 LTR MaLR -351 138 31 3 763 395 294 8 0 chr9 23348398 23348524 -100727648 - L1_Rod LINE L1 -6307 865 739 3 763 689 142 78 8 chr9 23348567 23348695 -100727477 - L1_Rod LINE L1 -6511 661 525 3 763 1811 264 29 24 chr9 23348972 23349427 -100726745 + Lx9 LINE L1 6466 6922 -722 3 763 213 169 0 0 chr9 23349432 23349491 -100726681 + CT-rich Low_complexity Low_complexity 2 60 0 3 763 546 16 0 0 chr9 23349492 23349555 -100726617 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 763 1001 281 10 32 chr9 23349587 23349899 -100726273 - Lx5 LINE L1 -35 7015 6711 4 763 1607 259 81 46 chr9 23349898 23350482 -100725690 + Lx9 LINE L1 6907 7510 -134 3 763 307 320 0 0 chr9 23350484 23350584 -100725588 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 763 450 0 0 0 chr9 23350682 23350732 -100725440 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 763 236 330 53 0 chr9 23352030 23352124 -100724048 - L1MB8 LINE L1 -6 6172 6074 4 763 268 273 0 0 chr9 23352213 23352279 -100723893 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 763 248 299 6 0 chr9 23352281 23352458 -100723714 + (TATG)n Simple_repeat Simple_repeat 1 178 0 4 763 406 287 3 0 chr9 23352460 23353091 -100723081 + (TG)n Simple_repeat Simple_repeat 1 633 0 4 763 196 294 85 21 chr9 23353406 23353500 -100722672 + L2a LINE L2 3327 3426 0 4 763 398 338 12 38 chr9 23353655 23353815 -100722357 + MER58A DNA MER1_type 12 167 -57 4 763 900 83 0 22 chr9 23354464 23354600 -100721572 - L1Md_F2 LINE L1 -6 6576 6444 4 763 3647 37 5 0 chr9 23354600 23355030 -100721142 + L1Md_F2 LINE L1 5657 6088 -494 4 763 1138 68 0 0 chr9 23355397 23355530 -100720642 + B1_Mm SINE Alu 1 133 -14 4 763 1302 54 0 0 chr9 23355530 23355697 -100720475 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 4 763 930 243 29 10 chr9 23355707 23355915 -100720257 + B3 SINE B2 3 214 -2 4 763 315 0 0 0 chr9 23356681 23356716 -100719456 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 763 270 0 0 0 chr9 23356716 23356745 -100719427 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 763 237 317 0 0 chr9 23356878 23356960 -100719212 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 763 261 356 36 76 chr9 23358075 23358376 -100717796 + RodERV21-int LTR ERV1 1374 1662 -3329 4 763 2562 173 22 22 chr9 23358581 23359239 -100716933 - RLTR31_Mm LTR ERVK 0 561 1 4 763 419 313 69 95 chr9 23359239 23359776 -100716396 + MYSERV6-int LTR ERVK 8160 8682 -277 4 763 444 15 46 0 chr9 23360420 23360485 -100715687 + (CAA)n Simple_repeat Simple_repeat 2 69 0 4 763 21 0 0 0 chr9 23360855 23360876 -100715296 + AT_rich Low_complexity Low_complexity 1 21 0 4 763 335 238 46 35 chr9 23360960 23361047 -100715125 + RLTR19-int LTR ERVK 3757 3844 -2293 4 763 254 200 75 144 chr9 23361248 23361394 -100714778 + RLTR19-int LTR ERVK 3969 4104 -2033 4 763 988 236 186 14 chr9 23361745 23361894 -100714278 - RMER17C LTR ERVK 0 410 231 4 763 871 54 15 0 chr9 23361894 23362024 -100714148 + (GA)n Simple_repeat Simple_repeat 2 133 0 4 763 988 236 186 14 chr9 23362024 23362223 -100713949 - RMER17C LTR ERVK -180 230 2 4 763 847 293 46 47 chr9 23364624 23364968 -100711204 - MLT2B2 LTR ERVL -173 347 7 4 763 1203 135 16 11 chr9 23365469 23365656 -100710516 + B2_Mm2 SINE B2 4 191 -4 4 763 225 0 0 0 chr9 23365967 23365992 -100710180 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 763 369 0 0 0 chr9 23365992 23366032 -100710140 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 763 585 282 86 50 chr9 23366419 23366721 -100709451 - L1M5 LINE L1 -452 5672 5360 4 763 2030 205 37 166 chr9 23367130 23367731 -100708441 + RMER19C LTR ERVK 1 516 -95 4 763 7040 67 43 1 chr9 23367731 23368588 -100707584 - RLTR13B1 LTR ERVK 0 893 1 4 763 2030 205 37 166 chr9 23368588 23368687 -100707485 + RMER19C LTR ERVK 517 611 0 4 763 735 12 0 0 chr9 23369632 23369716 -100706456 + (TTCCC)n Simple_repeat Simple_repeat 1 84 0 4 763 319 287 18 44 chr9 23370234 23370423 -100705749 - LTR85c LTR Gypsy? -236 548 390 4 763 226 289 85 69 chr9 23370959 23371089 -100705083 - RMER15 LTR ERVL -443 132 1 4 763 387 291 68 34 chr9 23372245 23372347 -100703825 + MER5A1 DNA MER1_type 16 120 -46 4 763 458 43 0 41 chr9 23372347 23372420 -100703752 + Lx LINE L1 6585 6654 0 4 763 387 291 68 34 chr9 23372420 23372463 -100703709 + MER5A1 DNA MER1_type 121 166 0 4 763 206 268 0 73 chr9 23372508 23372645 -100703527 + C-rich Low_complexity Low_complexity 6 132 0 4 763 701 296 64 75 chr9 23372841 23373455 -100702717 - RLTR18B LTR ERVK -7 609 29 4 763 249 254 16 33 chr9 23373477 23373538 -100702634 + 4.5SRNA scRNA scRNA 5 64 -30 4 763 262 262 64 27 chr9 23373572 23373682 -100702490 + Tigger14a DNA MER2_type 169 282 -42 4 763 440 195 10 262 chr9 23374115 23374315 -100701857 - B3A SINE B2 -1 197 49 4 763 535 296 71 82 chr9 23374390 23374858 -100701314 + RMER20A LTR ERVK 207 681 -227 4 763 328 304 22 20 chr9 23374976 23375115 -100701057 - B2_Mm2 SINE B2 -56 142 1 4 763 234 174 0 0 chr9 23375183 23375229 -100700943 + CT-rich Low_complexity Low_complexity 4 49 0 4 763 321 295 0 31 chr9 23375961 23376059 -100700113 + ORR1E LTR MaLR 1 95 -264 4 763 225 288 42 135 chr9 23379257 23379377 -100696795 - MER5A DNA MER1_type -1 177 72 4 763 23 0 0 0 chr9 23380221 23380244 -100695928 + AT_rich Low_complexity Low_complexity 1 23 0 4 763 243 324 73 20 chr9 23381252 23381403 -100694769 + MIR SINE MIR 17 175 -87 4 763 2247 142 34 39 chr9 23381413 23381851 -100694321 - RMER10A LTR ERVL 0 442 7 4 763 198 71 0 0 chr9 23382285 23382313 -100693859 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 4 763 1246 68 0 0 chr9 23382871 23383018 -100693154 + B1_Mus2 SINE Alu 1 147 0 4 763 489 110 0 0 chr9 23383018 23383091 -100693081 + (A)n Simple_repeat Simple_repeat 1 73 0 4 763 4626 99 9 1 chr9 23388433 23389093 -100687079 + L1_Mus3 LINE L1 5973 6637 -1 4 763 2651 321 47 7 chr9 23389495 23390578 -100685594 - Lx9 LINE L1 -109 7535 6410 4 763 256 229 0 46 chr9 23390815 23390902 -100685270 - MLT1A1 LTR MaLR -1 407 325 4 763 237 324 0 0 chr9 23391969 23392043 -100684129 - ID4 SINE ID -9 74 1 4 763 22 35 0 0 chr9 23392671 23392700 -100683472 + AT_rich Low_complexity Low_complexity 1 29 0 4 763 195 250 0 0 chr9 23392744 23392796 -100683376 + (CATA)n Simple_repeat Simple_repeat 3 54 0 4 763 1901 137 66 20 chr9 23393571 23393921 -100682251 + RLTR9A LTR ERVK 3 368 0 4 763 575 262 21 7 chr9 23393967 23394109 -100682063 - RSINE1 SINE B4 -19 146 3 4 763 329 299 10 10 chr9 23394152 23394250 -100681922 - RMER15 LTR ERVL -16 559 462 4 763 3296 43 0 8 chr9 23394250 23394649 -100681523 + MTA_Mm LTR MaLR 1 396 0 4 763 398 306 6 82 chr9 23394738 23394909 -100681263 - RMER15 LTR ERVL -169 406 249 4 763 295 246 16 0 chr9 23395650 23395711 -100680461 - MER117 DNA MER1_type -92 105 44 4 763 226 0 0 56 chr9 23396644 23396680 -100679492 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 763 5040 164 35 15 chr9 23397066 23397956 -100678216 - RMER13B LTR ERVK 0 908 1 4 763 1711 161 40 16 chr9 23398024 23398345 -100677827 + ORR1A4 LTR MaLR 1 329 0 4 763 269 323 0 0 chr9 23399165 23399230 -100676942 + ID_B1 SINE B4 83 147 -77 4 763 289 293 9 26 chr9 23399166 23399254 -100676918 + PB1D7 SINE Alu 3 86 -41 4 763 279 0 0 0 chr9 23399256 23399287 -100676885 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 763 793 249 160 24 chr9 23399469 23399807 -100676365 + Lx8 LINE L1 7084 7467 -6 4 763 253 263 90 11 chr9 23399872 23400060 -100676112 - L1MEg LINE L1 -4849 1235 1033 4 763 428 235 0 0 chr9 23400083 23400164 -100676008 + ORR1D2 LTR MaLR 1 81 -289 4 763 608 283 157 38 chr9 23400767 23401265 -100674907 + L1MA4 LINE L1 5357 5913 -387 4 763 224 30 0 29 chr9 23401623 23401657 -100674515 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 763 1107 66 0 7 chr9 23401657 23401794 -100674378 - B1_Mm SINE Alu -10 137 2 4 763 999 130 0 0 chr9 23402031 23402200 -100673972 + (TCTCTG)n Simple_repeat Simple_repeat 6 174 0 4 763 269 325 12 0 chr9 23402592 23402672 -100673500 + MLT1E3 LTR MaLR 1 81 -543 4 763 399 41 0 0 chr9 23402768 23402817 -100673355 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 763 3550 223 33 14 chr9 23402826 23403617 -100672555 - Lx5 LINE L1 -5 7045 6240 4 763 2620 78 50 8 chr9 23403623 23403999 -100672173 + MTB LTR MaLR 9 400 0 4 763 2533 190 74 9 chr9 23404003 23404741 -100671431 - Lx5 LINE L1 -815 6235 5426 4 763 2355 178 0 173 chr9 23404744 23404904 -100671268 + L1_Mur2 LINE L1 1955 2099 -3778 4 763 2556 160 77 2 chr9 23404904 23405356 -100670816 + Lx4A LINE L1 6570 7055 -3 4 763 2355 178 0 173 chr9 23405356 23405957 -100670215 + L1_Mur2 LINE L1 2100 2584 -3293 4 763 717 313 62 17 chr9 23406428 23406945 -100669227 + L1_Mur2 LINE L1 4722 5261 -616 4 763 22 0 0 0 chr9 23406958 23406980 -100669192 + AT_rich Low_complexity Low_complexity 1 22 0 4 763 5505 236 125 18 chr9 23407069 23408657 -100667515 - Lx6 LINE L1 -15 7445 5688 4 763 7672 111 9 12 chr9 23408681 23409951 -100666221 - L1_Mus2 LINE L1 -1505 4378 3112 4 763 10029 91 6 1 chr9 23409939 23412111 -100664061 + L1_Mus2 LINE L1 4386 6566 0 4 763 294 29 0 0 chr9 23412113 23412148 -100664024 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 763 260 231 65 11 chr9 23412188 23412280 -100663892 + (TATATG)n Simple_repeat Simple_repeat 6 102 0 4 763 24 32 0 0 chr9 23412569 23412600 -100663572 + AT_rich Low_complexity Low_complexity 1 31 0 4 763 15734 93 10 7 chr9 23412709 23416140 -100660032 + L1Md_F LINE L1 101 3501 -2382 4 763 4542 52 0 0 chr9 23416140 23416733 -100659439 + L1Md_F2 LINE L1 6010 6582 0 4 763 592 296 11 66 chr9 23416770 23417040 -100659132 + MLT1E1 LTR MaLR 357 639 -15 4 763 474 18 0 0 chr9 23417074 23417129 -100659043 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 763 8683 128 11 13 chr9 23417293 23418803 -100657369 - Lx4A LINE L1 -7 7051 5536 4 763 235 285 124 10 chr9 23419273 23419482 -100656690 - L1MC5 LINE L1 -188 7773 7541 4 763 530 300 22 0 chr9 23419513 23419693 -100656479 - L1MA6 LINE L1 -2 6298 6115 4 763 352 264 94 75 chr9 23420116 23420317 -100655855 - L1MC5 LINE L1 -721 7240 7036 4 763 344 287 39 22 chr9 23420409 23420587 -100655585 - L1_Mur3 LINE L1 -3623 2257 2077 4 763 379 256 44 54 chr9 23420594 23420830 -100655342 + Lx8 LINE L1 5133 5383 -497 4 763 867 317 59 75 chr9 23420842 23421336 -100654836 + RLTR17 LTR ERVK 85 570 -122 4 763 186 43 0 0 chr9 23421457 23421480 -100654692 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 763 198 0 0 0 chr9 23421565 23421587 -100654585 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 5 763 541 268 167 18 chr9 23421599 23421955 -100654217 + Lx8 LINE L1 5468 5917 -1727 4 763 1350 249 94 30 chr9 23422128 23422563 -100653609 + Lx8 LINE L1 6540 7002 -471 4 763 234 0 0 0 chr9 23422961 23422987 -100653185 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 763 482 274 71 7 chr9 23423034 23423188 -100652984 + Lx8 LINE L1 7081 7244 -229 4 763 323 269 183 0 chr9 23423306 23423410 -100652762 + B3A SINE B2 3 125 -73 5 763 571 313 39 122 chr9 23423687 23424095 -100652077 + MLT1B LTR MaLR 8 381 -9 5 763 768 188 7 32 chr9 23424176 23424330 -100651842 - RMER20B LTR ERVK 0 627 478 5 763 1370 201 22 7 chr9 23424356 23424627 -100651545 - RMER20B LTR ERVK -346 281 7 5 763 220 269 0 0 chr9 23424706 23424758 -100651414 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 763 231 241 43 75 chr9 23425076 23425170 -100651002 - MLT1A1 LTR MaLR -315 93 3 5 763 27 29 0 0 chr9 23425243 23425277 -100650895 + AT_rich Low_complexity Low_complexity 1 34 0 5 763 213 39 0 0 chr9 23425279 23425305 -100650867 + (TTA)n Simple_repeat Simple_repeat 2 27 0 5 763 529 279 40 50 chr9 23425449 23425649 -100650523 + B3A SINE B2 1 198 0 5 763 1615 224 45 21 chr9 23426288 23426666 -100649506 - MTD LTR MaLR -15 404 18 5 763 390 245 30 20 chr9 23427306 23427406 -100648766 - MT2A LTR ERVL -120 481 381 5 763 595 245 71 19 chr9 23427419 23427508 -100648664 - RLTR20D LTR ERVK 0 568 470 5 763 222 37 0 0 chr9 23427508 23427535 -100648637 + (CAA)n Simple_repeat Simple_repeat 3 29 0 5 763 595 245 71 19 chr9 23427535 23427599 -100648573 - RLTR20D LTR ERVK -99 469 407 5 763 582 267 139 23 chr9 23427587 23427802 -100648370 - RLTR20D LTR ERVK -284 284 45 5 763 741 230 126 50 chr9 23427775 23428013 -100648159 - MT2A LTR ERVL -277 256 1 5 763 21 0 0 0 chr9 23428446 23428467 -100647705 + AT_rich Low_complexity Low_complexity 1 21 0 5 763 287 311 43 19 chr9 23430624 23430767 -100645405 - MIR SINE MIR -64 204 59 5 763 239 264 13 53 chr9 23431384 23431460 -100644712 - Kanga1a DNA Tc2 -4 750 678 5 763 234 288 85 0 chr9 23431560 23431619 -100644553 + PB1 SINE Alu 1 64 -63 5 763 538 180 275 55 chr9 23432786 23432968 -100643204 + URR1A DNA MER1_type 5 226 0 5 763 255 31 0 0 chr9 23433042 23433074 -100643098 + (T)n Simple_repeat Simple_repeat 1 32 0 5 763 1925 39 0 4 chr9 23434321 23434556 -100641616 - L1Md_F2 LINE L1 -12 6570 6337 5 763 2833 43 0 0 chr9 23434556 23434908 -100641264 + L1Md_F2 LINE L1 5972 6323 -259 5 763 591 256 31 19 chr9 23435185 23435344 -100640828 + RSINE1 SINE B4 3 163 -2 5 763 813 157 191 16 chr9 23435895 23436083 -100640089 + URR1B DNA MER1_type 5 225 0 5 763 243 370 0 92 chr9 23436633 23436752 -100639420 - MLT1J1 LTR MaLR -278 166 59 5 763 306 0 0 0 chr9 23437061 23437095 -100639077 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 763 336 102 0 0 chr9 23438119 23438168 -100638004 + (CATA)n Simple_repeat Simple_repeat 3 51 0 5 763 225 0 0 0 chr9 23438183 23438208 -100637964 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 763 715 268 66 69 chr9 23439508 23439825 -100636347 - Lx6 LINE L1 -1222 6238 5923 5 763 363 273 31 0 chr9 23440371 23440499 -100635673 - L1ME2z LINE L1 -190 6254 6123 5 763 329 320 32 22 chr9 23440679 23440864 -100635308 - Charlie2a DNA MER1_type -65 2796 2610 5 763 858 249 9 24 chr9 23440873 23441083 -100635089 + B3 SINE B2 3 209 -7 5 763 680 187 57 50 chr9 23441097 23441238 -100634934 + B1_Mus2 SINE Alu 1 142 -5 5 763 656 108 90 0 chr9 23441247 23441358 -100634814 + L1Md_F2 LINE L1 6452 6572 -10 5 763 21 0 0 0 chr9 23441382 23441403 -100634769 + AT_rich Low_complexity Low_complexity 1 21 0 5 763 279 0 0 0 chr9 23441492 23441523 -100634649 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 763 819 337 37 7 chr9 23441541 23441810 -100634362 + Tigger7 DNA MER2_type 35 311 -2180 5 763 855 270 86 24 chr9 23441793 23442131 -100634041 + Tigger7 DNA MER2_type 2133 2491 0 5 763 232 159 0 43 chr9 23442247 23442293 -100633879 - RMER19C LTR ERVK 0 902 859 5 763 7254 80 7 6 chr9 23442293 23443354 -100632818 + L1_Mus4 LINE L1 5553 6614 -22 5 763 1440 252 74 65 chr9 23443354 23443876 -100632296 - RMER19C LTR ERVK -18 593 37 5 763 302 370 99 36 chr9 23443907 23444271 -100631901 + MLT1A1 LTR MaLR 17 403 -5 5 763 727 150 34 7 chr9 23444312 23444460 -100631712 + Lx2 LINE L1 6846 6997 0 5 763 768 77 0 0 chr9 23446071 23446175 -100629997 + (TC)n Simple_repeat Simple_repeat 2 105 0 5 763 396 0 0 0 chr9 23446189 23446233 -100629939 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 763 527 317 6 5 chr9 23446242 23446400 -100629772 - ORR1E LTR MaLR -211 159 1 5 763 3443 28 2 0 chr9 23446560 23446955 -100629217 - MTA_Mm LTR MaLR 0 396 1 5 763 8989 42 5 1 chr9 23446955 23448049 -100628123 - MTA_Mm-int LTR MaLR 0 1098 1 5 763 3447 28 2 0 chr9 23448049 23448444 -100627728 - MTA_Mm LTR MaLR 0 396 1 5 763 189 0 0 0 chr9 23449458 23449479 -100626693 + (GAA)n Simple_repeat Simple_repeat 3 23 0 5 763 414 247 54 7 chr9 23449595 23449742 -100626430 - L1MA6 LINE L1 -7 6293 6140 5 763 611 348 131 38 chr9 23449742 23450238 -100625934 + MLT2B3 LTR ERVL 1 542 -12 5 763 957 288 75 20 chr9 23450254 23450747 -100625425 - L1MA6 LINE L1 -166 6134 5615 5 763 326 227 48 67 chr9 23450755 23450859 -100625313 - PB1D9 SINE Alu 0 120 19 5 763 949 296 98 9 chr9 23450949 23451522 -100624650 + L1M2 LINE L1 4133 4756 -1387 5 763 361 387 27 0 chr9 23451684 23451834 -100624338 - MER5A DNA MER1_type -31 158 5 5 763 189 326 0 0 chr9 23451905 23451954 -100624218 - MER5A DNA MER1_type -75 114 66 5 763 654 78 114 19 chr9 23453686 23453782 -100622390 + B1_Mus1 SINE Alu 34 141 -7 5 763 276 30 0 0 chr9 23453782 23453815 -100622357 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 5 763 250 36 89 0 chr9 23453823 23453879 -100622293 + (CAAA)n Simple_repeat Simple_repeat 3 63 0 5 763 548 323 112 8 chr9 23454224 23454492 -100621680 - MER2 DNA MER2_type -49 296 1 5 763 302 333 107 49 chr9 23454575 23454799 -100621373 + MLT1J-int LTR MaLR 833 1069 -318 5 763 321 299 159 66 chr9 23455984 23456210 -100619962 + MIRb SINE MIR 7 253 -15 5 763 222 37 0 0 chr9 23456833 23456860 -100619312 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 763 1857 153 9 69 chr9 23458193 23458627 -100617545 + RMER17C LTR ERVK 1 408 -2 5 763 238 233 16 16 chr9 23458648 23458709 -100617463 - MIR3 SINE MIR -14 194 134 5 763 1254 203 53 0 chr9 23458714 23458995 -100617177 + RLTR40 LTR ERVK 2 297 -520 5 763 684 227 0 0 chr9 23459020 23459196 -100616976 + (TATG)n Simple_repeat Simple_repeat 4 179 0 5 763 1267 175 99 11 chr9 23460409 23460681 -100615491 + Lx5 LINE L1 5449 5744 -133 5 763 1677 275 41 10 chr9 23460812 23461398 -100614774 + Lx5 LINE L1 5737 6365 -685 5 763 593 286 154 40 chr9 23461481 23461831 -100614341 + Lx6 LINE L1 6959 7348 -112 5 95 2205 210 61 82 chr9 23461881 23462504 -100613668 + RMER19C LTR ERVK 2 611 0 5 764 22 0 0 0 chr9 23462573 23462595 -100613577 + AT_rich Low_complexity Low_complexity 1 22 0 5 764 540 235 29 0 chr9 23462624 23462726 -100613446 + B1F SINE Alu 1 105 -44 5 764 17358 40 0 0 chr9 23463336 23465548 -100610624 + L1Md_T LINE L1 3375 5586 -297 5 764 8108 52 0 0 chr9 23465548 23466544 -100609628 + L1Md_T LINE L1 5587 6582 0 5 764 7380 54 1 4 chr9 23466565 23467547 -100608625 + L1Md_F2 LINE L1 4608 5586 -297 5 764 7862 55 7 0 chr9 23467548 23468534 -100607638 + L1Md_F2 LINE L1 5588 6580 -2 5 764 1422 328 82 13 chr9 23469098 23469657 -100606515 - Lx8 LINE L1 -166 7307 6710 5 764 324 0 0 0 chr9 23469657 23469693 -100606479 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 5 764 1422 328 82 13 chr9 23469693 23469886 -100606286 - Lx8 LINE L1 -764 6709 6503 5 764 958 223 54 73 chr9 23469891 23470152 -100606020 - ORR1C2 LTR MaLR 0 384 129 5 764 299 361 16 32 chr9 23470416 23470539 -100605633 + MTEa LTR MaLR 259 379 0 5 764 239 291 147 28 chr9 23470590 23470767 -100605405 + L2 LINE L2 2738 2935 -484 5 764 1198 68 0 0 chr9 23471485 23471631 -100604541 + B1_Mm SINE Alu 1 146 -1 5 764 1627 194 10 0 chr9 23471657 23471961 -100604211 - Lx5 LINE L1 -570 6480 6174 5 764 2629 206 42 2 chr9 23471961 23472463 -100603709 + Lx5 LINE L1 6521 7042 -8 5 764 546 157 0 0 chr9 23472620 23472760 -100603412 + GA-rich Low_complexity Low_complexity 2 141 0 5 764 2916 89 72 5 chr9 23472842 23473261 -100602911 - RLTR44B LTR ERVK -2 447 1 5 764 1137 254 57 24 chr9 23473717 23474052 -100602120 + ORR1E LTR MaLR 4 349 -10 5 764 201 259 17 16 chr9 23474308 23474393 -100601779 - MIRc SINE MIR -76 192 107 5 764 189 0 0 0 chr9 23474959 23474980 -100601192 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 5 764 216 0 0 0 chr9 23476739 23476763 -100599409 + (A)n Simple_repeat Simple_repeat 1 24 0 5 764 240 284 12 12 chr9 23477080 23477162 -100599010 + GA-rich Low_complexity Low_complexity 3 84 0 5 764 230 313 84 96 chr9 23477525 23477691 -100598481 - MIRb SINE MIR -9 259 96 5 764 219 278 0 0 chr9 23478790 23478844 -100597328 + A-rich Low_complexity Low_complexity 1 54 0 5 764 3719 0 2 0 chr9 23478962 23479397 -100596775 - L1Md_T LINE L1 0 6582 6170 5 764 252 0 0 0 chr9 23480031 23480059 -100596113 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 764 342 0 0 0 chr9 23480059 23480096 -100596076 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 764 684 93 0 0 chr9 23480099 23480196 -100595976 + (GA)n Simple_repeat Simple_repeat 2 98 0 5 764 1585 264 46 11 chr9 23480692 23481212 -100594960 + L1_Mur3 LINE L1 5340 5877 -3 5 764 1008 321 76 50 chr9 23481360 23482041 -100594131 + Lx8 LINE L1 6621 7310 -163 5 764 748 237 50 5 chr9 23482047 23482246 -100593926 + B3 SINE B2 3 210 -6 5 764 22 0 0 0 chr9 23482252 23482274 -100593898 + AT_rich Low_complexity Low_complexity 1 22 0 5 764 37051 51 5 8 chr9 23482781 23489281 -100586891 - L1Md_T LINE L1 0 6582 98 5 764 2970 164 61 56 chr9 23489392 23489966 -100586206 + RMER19C LTR ERVK 1 577 -34 5 764 23 33 0 0 chr9 23490159 23490189 -100585983 + AT_rich Low_complexity Low_complexity 1 30 0 5 764 2026 331 33 35 chr9 23490430 23491530 -100584642 + Lx8 LINE L1 6348 7444 -29 5 764 984 289 93 37 chr9 23491554 23492040 -100584132 + Lx8 LINE L1 6148 6660 -813 5 764 21 0 0 0 chr9 23492098 23492119 -100584053 + AT_rich Low_complexity Low_complexity 1 21 0 5 764 2675 76 11 30 chr9 23492224 23492590 -100583582 - RLTR10D LTR ERVK 0 359 1 5 764 444 292 24 90 chr9 23492632 23492843 -100583329 - B3A SINE B2 0 198 2 5 764 308 246 259 17 chr9 23492884 23493000 -100583172 - RSINE1 SINE B4 -16 149 6 6 764 23 54 0 0 chr9 23493008 23493045 -100583127 + AT_rich Low_complexity Low_complexity 1 37 0 6 764 309 342 0 0 chr9 23493121 23493200 -100582972 - MLT2C1 LTR ERVL -49 514 436 6 764 711 263 11 25 chr9 23493198 23493395 -100582777 + MTC LTR MaLR 228 407 -14 6 764 217 130 0 85 chr9 23493767 23493826 -100582346 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 6 764 1801 183 221 26 chr9 23493862 23494327 -100581845 + RMER19B LTR ERVK 347 902 0 6 764 216 0 0 0 chr9 23494340 23494364 -100581808 + (T)n Simple_repeat Simple_repeat 1 24 0 6 764 509 227 101 43 chr9 23494364 23494502 -100581670 - B1_Mur3 SINE Alu 0 149 4 6 764 306 366 32 16 chr9 23494630 23494755 -100581417 - ORR1E LTR MaLR -224 135 9 6 764 185 431 20 35 chr9 23496140 23496342 -100579830 + MIRb SINE MIR 2 200 -68 6 764 684 320 116 21 chr9 23498854 23499276 -100576896 + L2 LINE L2 865 1326 -2093 6 764 250 198 112 9 chr9 23499569 23499676 -100576496 - L1MB7 LINE L1 -25 6159 6042 6 764 561 326 11 46 chr9 23500094 23500374 -100575798 + RMER15 LTR ERVL 263 532 -43 1 764 835 264 19 5 chr9 23500527 23500872 -100575300 + L1_Rod LINE L1 1036 1388 -4459 2 764 492 219 54 8 chr9 23500878 23501007 -100575165 + Lx9 LINE L1 5618 5752 -95 3 764 1122 69 7 14 chr9 23501017 23501164 -100575008 + B1_Mm SINE Alu 2 147 0 4 764 492 72 0 0 chr9 23501184 23501253 -100574919 + (GAAAA)n Simple_repeat Simple_repeat 2 70 0 5 764 399 176 0 3 chr9 23501256 23501356 -100574816 + Lx9 LINE L1 5777 5912 -1732 3 764 618 14 0 0 chr9 23501938 23502009 -100574163 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 764 2028 303 58 49 chr9 23502061 23503018 -100573154 + Lx9 LINE L1 6462 7427 -217 3 764 288 141 32 11 chr9 23503151 23503244 -100572928 + (CAAA)n Simple_repeat Simple_repeat 2 96 0 7 764 705 293 88 4 chr9 23503272 23503546 -100572626 + RMER15-int LTR ERVL 976 1272 -3727 8 764 955 109 6 6 chr9 23504117 23504274 -100571898 + (TTCTC)n Simple_repeat Simple_repeat 4 160 0 9 764 668 45 0 11 chr9 23504275 23504364 -100571808 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 1 764 1637 293 57 38 chr9 23505700 23506260 -100569912 + MTE-int LTR MaLR 161 731 -849 1 764 1288 249 94 7 chr9 23506240 23506547 -100569625 + MTE2b LTR MaLR 46 379 0 1 764 368 282 9 0 chr9 23506666 23506776 -100569396 + RMER15-int LTR ERVL 1566 1676 -3323 8 764 418 250 31 62 chr9 23507378 23507540 -100568632 + RMER15-int LTR ERVL 4146 4302 -697 8 764 181 267 0 77 chr9 23507581 23507646 -100568526 + MIR3 SINE MIR 133 192 -16 1 764 1012 290 46 8 chr9 23507646 23507997 -100568175 + RMER15-int LTR ERVL 4429 4792 -207 8 764 1722 228 83 76 chr9 23508083 23508574 -100567598 + RLTR40 LTR ERVK 19 521 -296 1 764 549 44 0 0 chr9 23508574 23508642 -100567530 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 764 1722 228 83 76 chr9 23508642 23508792 -100567380 + RLTR40 LTR ERVK 522 664 -153 1 764 898 337 38 29 chr9 23508872 23509217 -100566955 - MTE2b LTR MaLR -16 363 16 1 764 242 235 112 15 chr9 23509416 23509550 -100566622 - L1M4 LINE L1 -453 6591 6445 1 764 201 94 0 0 chr9 23509555 23509587 -100566585 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 764 441 270 130 8 chr9 23509706 23510014 -100566158 - L1M4 LINE L1 -1526 5477 5123 1 764 321 308 86 93 chr9 23510084 23510443 -100565729 + ORR1E LTR MaLR 1 339 -69 1 764 582 110 85 0 chr9 23510443 23510561 -100565611 + L1_Mus3 LINE L1 6511 6638 0 2 764 303 332 88 125 chr9 23510561 23510624 -100565548 + ORR1E LTR MaLR 340 406 -2 1 764 424 325 63 22 chr9 23510625 23510987 -100565185 - L1M4 LINE L1 -1910 5096 4720 1 764 310 243 95 20 chr9 23511000 23511147 -100565025 - L1M4 LINE L1 -5103 2231 2074 1 764 243 0 0 0 chr9 23511223 23511250 -100564922 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 764 226 293 17 0 chr9 23511337 23511395 -100564777 + RLTR25B LTR ERVK 1 59 -969 2 764 347 284 49 98 chr9 23511398 23511601 -100564571 + RLTR25B LTR ERVK 15 207 -821 2 764 574 348 14 28 chr9 23512661 23512951 -100563221 - B4 SINE B4 -6 286 1 2 764 1705 301 53 12 chr9 23514616 23515514 -100560658 + L1_Mur3 LINE L1 3321 4255 -1625 2 764 382 301 43 54 chr9 23515505 23515691 -100560481 - Lx6 LINE L1 -33 7427 7244 2 764 3301 213 95 7 chr9 23515681 23516505 -100559667 + Lx6 LINE L1 5631 6526 -934 2 764 3268 162 29 11 chr9 23516505 23516602 -100559570 - RLTR20B2 LTR ERVK 0 560 465 2 764 441 0 0 0 chr9 23516602 23516651 -100559521 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 764 366 23 0 0 chr9 23516651 23516693 -100559479 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 764 3268 162 29 11 chr9 23516693 23517144 -100559028 - RLTR20B2 LTR ERVK -96 464 2 2 764 2449 203 88 11 chr9 23517144 23517710 -100558462 + Lx6 LINE L1 6521 7130 -330 2 764 374 215 0 12 chr9 23518082 23518162 -100558010 - L1M4 LINE L1 -5619 1285 1207 1 764 180 0 0 0 chr9 23518186 23518206 -100557966 + (T)n Simple_repeat Simple_repeat 1 20 0 3 764 200 274 81 0 chr9 23518222 23518284 -100557888 + MIR SINE MIR 63 129 -133 3 764 841 41 8 54 chr9 23518296 23518375 -100557797 - L1Md_T LINE L1 0 6582 6509 3 764 2359 84 116 8 chr9 23518375 23518746 -100557426 + IAPLTR2a LTR ERVK 1 411 0 3 764 841 41 8 54 chr9 23518746 23518796 -100557376 - L1Md_T LINE L1 -74 6508 6459 3 764 763 207 104 38 chr9 23518953 23519164 -100557008 - MTC LTR MaLR -1 420 196 3 764 4724 86 14 5 chr9 23519164 23519832 -100556340 - L1Md_F2 LINE L1 0 6582 5909 3 764 32808 69 5 3 chr9 23519838 23524421 -100551751 - L1Md_F2 LINE L1 -14 6568 1983 3 764 390 21 0 0 chr9 23524421 23524468 -100551704 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 3 764 32808 113 17 25 chr9 23524468 23525758 -100550414 - L1Md_F2 LINE L1 -3901 1982 709 3 764 1207 62 0 0 chr9 23525758 23525904 -100550268 + B1_Mus2 SINE Alu 2 147 0 3 764 4446 175 33 54 chr9 23525904 23526383 -100549789 - L1Md_F2 LINE L1 -5973 751 238 3 764 21 0 0 0 chr9 23526391 23526412 -100549760 + AT_rich Low_complexity Low_complexity 1 21 0 3 764 869 126 35 12 chr9 23526416 23526585 -100549587 - L1_Mus2 LINE L1 -1 6565 6393 4 764 538 232 141 0 chr9 23526586 23526728 -100549444 - MTC LTR MaLR -257 162 1 3 764 247 345 72 5 chr9 23527031 23527226 -100548946 - L1M4 LINE L1 -5930 974 767 1 764 279 0 0 0 chr9 23527355 23527386 -100548786 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 764 891 124 0 0 chr9 23527576 23527721 -100548451 + (TTCC)n Simple_repeat Simple_repeat 4 148 0 4 764 3763 34 0 0 chr9 23527809 23528252 -100547920 + L1Md_T LINE L1 6140 6582 0 4 764 426 181 33 49 chr9 23528252 23528374 -100547798 - Lx9 LINE L1 -14 7630 7511 4 764 183 80 0 0 chr9 23528374 23528399 -100547773 + (CG)n Simple_repeat Simple_repeat 2 26 0 4 764 321 26 0 0 chr9 23528399 23528437 -100547735 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 764 952 296 57 28 chr9 23528994 23529383 -100546789 - Lx9 LINE L1 -499 7145 6746 4 764 1185 237 121 18 chr9 23529766 23530105 -100546067 - ORR1D1 LTR MaLR 0 374 1 4 764 481 184 60 20 chr9 23530105 23530205 -100545967 - ORR1D1-int LTR MaLR 0 1370 1267 4 764 1407 284 50 36 chr9 23530214 23530817 -100545355 - Lx6 LINE L1 -26 7434 6485 4 764 326 347 7 7 chr9 23530834 23530982 -100545190 - Lx6 LINE L1 -701 6349 6202 4 764 1839 206 24 35 chr9 23530986 23531189 -100544983 + L1_Mur2 LINE L1 4607 4820 -1057 5 764 2437 171 179 28 chr9 23531189 23531720 -100544452 + RMER19C LTR ERVK 1 611 0 5 764 1839 206 24 35 chr9 23531720 23531979 -100544193 + L1_Mur2 LINE L1 4821 5064 -813 5 764 3152 266 71 24 chr9 23531979 23532277 -100543895 - ORR1D1-int LTR MaLR -94 1276 989 4 764 200 31 62 0 chr9 23532277 23532309 -100543863 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 5 764 3152 266 71 24 chr9 23532309 23532881 -100543291 - ORR1D1-int LTR MaLR -382 988 366 4 764 209 316 26 13 chr9 23533553 23533630 -100542542 + MIRm SINE MIR 75 152 -124 5 764 3192 147 44 19 chr9 23534667 23535236 -100540936 + RMER4B LTR ERVK 3 585 0 5 764 465 285 137 18 chr9 23535391 23535584 -100540588 + Lx8 LINE L1 7151 7459 -185 5 764 618 85 0 0 chr9 23535584 23535678 -100540494 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 764 398 285 137 18 chr9 23535678 23535813 -100540359 + Lx8 LINE L1 7460 7625 -19 5 764 291 239 0 0 chr9 23535894 23535961 -100540211 - Tigger5 DNA MER2_type -156 2250 2184 5 764 252 0 0 0 chr9 23535985 23536013 -100540159 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 5 764 221 359 98 0 chr9 23536034 23536126 -100540046 + B1F SINE Alu 2 102 -47 5 764 256 131 28 28 chr9 23536149 23536167 -100540005 + (CAGAGA)n Simple_repeat Simple_repeat 2 17 0 6 764 1033 27 20 13 chr9 23536167 23536318 -100539854 + (CA)n Simple_repeat Simple_repeat 2 153 0 6 764 256 131 28 28 chr9 23536318 23536370 -100539802 + (CAGAGA)n Simple_repeat Simple_repeat 6 59 0 6 764 1715 80 0 74 chr9 23536384 23536655 -100539517 + L1_Mus2 LINE L1 6316 6566 0 6 764 429 20 0 0 chr9 23538813 23538863 -100537309 + (GGA)n Simple_repeat Simple_repeat 3 52 0 6 764 271 330 57 20 chr9 23539009 23539309 -100536863 - L1M5 LINE L1 -364 5876 5566 6 764 255 256 92 13 chr9 23539383 23539566 -100536606 - L1M5 LINE L1 -606 5558 5358 6 764 333 320 49 73 chr9 23539718 23539814 -100536358 - L1M5 LINE L1 -870 5276 5185 6 764 2558 119 10 5 chr9 23539814 23540212 -100535960 - MTB LTR MaLR 0 400 1 6 764 333 320 49 73 chr9 23540212 23540361 -100535811 - L1M5 LINE L1 -962 5184 5037 6 764 479 170 21 11 chr9 23540580 23540598 -100535574 - URR1B DNA MER1_type 0 225 208 6 764 1293 49 6 0 chr9 23540598 23540782 -100535390 - L1_Mus1 LINE L1 0 6567 6395 6 764 479 170 21 11 chr9 23540782 23540857 -100535315 - URR1B DNA MER1_type -18 207 132 6 764 5233 73 22 8 chr9 23540861 23541574 -100534598 - L1Md_F2 LINE L1 0 6582 5860 7 764 1572 26 0 0 chr9 23541574 23541765 -100534407 + L1Md_F2 LINE L1 5667 5857 -725 7 764 456 210 202 0 chr9 23541765 23541884 -100534288 - URR1B DNA MER1_type -82 143 1 6 764 21 89 0 0 chr9 23543858 23543914 -100532258 + AT_rich Low_complexity Low_complexity 1 56 0 7 764 475 56 28 0 chr9 23544549 23544620 -100531552 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 764 25 65 0 0 chr9 23544985 23545031 -100531141 + AT_rich Low_complexity Low_complexity 1 46 0 7 764 2868 96 65 2 chr9 23545382 23545829 -100530343 + IAPLTR2_Mm LTR ERVK 1 475 0 7 764 3479 57 3 35 chr9 23545830 23546662 -100529510 + IAPEz-int LTR ERVK 9 662 -5819 7 764 885 67 0 0 chr9 23546662 23546781 -100529391 + IAPEz-int LTR ERVK 1359 1477 -5004 7 764 1713 107 8 0 chr9 23546776 23547028 -100529144 + IAPEz-int LTR ERVK 2244 2497 -5183 7 764 14240 50 5 0 chr9 23547027 23548842 -100527330 + IAPEz-int LTR ERVK 4656 6479 -2 7 764 2866 99 65 2 chr9 23548844 23549291 -100526881 + IAPLTR2_Mm LTR ERVK 1 475 0 7 764 2629 105 13 5 chr9 23549362 23549754 -100526418 + L1_Mus4 LINE L1 6235 6629 -7 7 764 33 25 0 0 chr9 23549968 23550008 -100526164 + AT_rich Low_complexity Low_complexity 1 40 0 7 764 12126 20 7 1 chr9 23550339 23551420 -100524752 - L1_Mm LINE L1 -707 5176 4096 7 764 2699 46 0 0 chr9 23551420 23551748 -100524424 + L1Md_T LINE L1 6255 6582 0 7 764 12126 20 7 1 chr9 23551748 23552162 -100524010 - L1_Mm LINE L1 -1788 4095 3673 7 764 2734 21 0 0 chr9 23552159 23552489 -100523683 + L1Md_T LINE L1 5257 5586 -297 8 764 8334 40 0 3 chr9 23552489 23553488 -100522684 + L1Md_T LINE L1 5587 6582 0 8 764 320 234 49 123 chr9 23553587 23553709 -100522463 + B3A SINE B2 70 182 -16 8 764 927 159 0 0 chr9 23553745 23553976 -100522196 + (CA)n Simple_repeat Simple_repeat 1 231 0 8 764 690 102 8 38 chr9 23554077 23554209 -100521963 - L1Md_F3 LINE L1 -3 6581 6454 8 764 1123 152 14 49 chr9 23554209 23554447 -100521725 + L1Md_F2 LINE L1 6025 6220 -362 8 764 619 72 10 20 chr9 23554729 23554828 -100521344 + (GAAA)n Simple_repeat Simple_repeat 1 98 0 8 764 445 296 5 31 chr9 23554849 23555072 -100521100 + L1MA4 LINE L1 6033 6249 -51 8 764 29 28 0 0 chr9 23556230 23556266 -100519906 + AT_rich Low_complexity Low_complexity 1 36 0 8 764 345 47 0 0 chr9 23556746 23556789 -100519383 + (CAA)n Simple_repeat Simple_repeat 3 45 0 8 764 645 272 11 53 chr9 23557999 23558189 -100517983 + B3A SINE B2 1 182 -16 8 764 326 306 26 35 chr9 23558667 23558782 -100517390 - LTR33 LTR ERVL -401 114 1 9 764 6776 90 36 0 chr9 23559460 23560520 -100515652 - L1_Mus3 LINE L1 -3 6635 5538 9 764 284 0 0 27 chr9 23560527 23560564 -100515608 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 9 764 248 120 20 0 chr9 23561039 23561089 -100515083 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 9 764 22 0 0 0 chr9 23561172 23561194 -100514978 + AT_rich Low_complexity Low_complexity 1 22 0 9 764 287 105 0 0 chr9 23561486 23561524 -100514648 + RMER5 LTR ERV1 15 52 -482 9 764 950 250 4 56 chr9 23561569 23561802 -100514370 + RMER5 LTR ERV1 46 266 -268 9 764 2940 180 35 16 chr9 23561967 23562537 -100513635 - Lx2B LINE L1 -2 6998 6418 9 764 6344 174 8 10 chr9 23562537 23564258 -100511914 + Lx2 LINE L1 4640 6367 -630 9 764 3261 36 5 0 chr9 23565565 23565954 -100510218 + L1Md_F3 LINE L1 6193 6583 -1 9 764 976 271 23 61 chr9 23567778 23567876 -100508296 + ORR1D1 LTR MaLR 69 168 -206 9 764 613 53 11 11 chr9 23567876 23567971 -100508201 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 1 764 976 271 23 61 chr9 23567971 23568182 -100507990 + ORR1D1 LTR MaLR 169 366 -8 9 764 1168 37 0 0 chr9 23568309 23568445 -100507727 + B1_Mus1 SINE Alu 1 136 -12 1 764 414 0 0 0 chr9 23568448 23568494 -100507678 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 764 691 279 0 50 chr9 23568598 23568798 -100507374 + B3A SINE B2 2 191 -7 1 764 268 277 35 24 chr9 23568821 23568906 -100507266 + RMER15 LTR ERVL 45 130 -445 1 764 482 258 113 25 chr9 23569017 23569176 -100506996 + RMER15 LTR ERVL 403 575 0 1 764 189 147 0 0 chr9 23570887 23570921 -100505251 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 1 764 5311 223 30 14 chr9 23571033 23572321 -100503851 - Lx5 LINE L1 0 7050 5742 1 764 281 285 79 79 chr9 23572683 23572818 -100503354 - Lx9 LINE L1 -1739 5905 5763 1 764 2905 54 5 65 chr9 23572818 23573231 -100502941 - RLTR10 LTR ERVK -2 388 1 1 764 590 287 88 52 chr9 23573231 23573580 -100502592 - Lx9 LINE L1 -509 5803 5438 1 764 22 35 0 0 chr9 23573960 23573989 -100502183 + AT_rich Low_complexity Low_complexity 1 29 0 1 764 2731 116 2 0 chr9 23574509 23574922 -100501250 + L1_Mus3 LINE L1 6102 6515 -123 1 764 906 361 65 30 chr9 23574977 23575503 -100500669 + MLT1F LTR MaLR 5 548 0 1 764 322 327 51 51 chr9 23575635 23575793 -100500379 + MLT2B3 LTR ERVL 76 233 -321 1 764 2012 108 3 41 chr9 23576404 23576723 -100499449 - L1_Mus2 LINE L1 -2 6564 6258 1 764 405 0 0 0 chr9 23576760 23576805 -100499367 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 764 573 316 73 64 chr9 23576896 23577116 -100499056 + B4A SINE B4 9 230 -62 1 764 232 333 14 0 chr9 23577172 23577244 -100498928 - B4A SINE B4 -71 221 149 1 764 2739 208 127 70 chr9 23577244 23578087 -100498085 + Lx7 LINE L1 6465 7355 -341 1 764 266 185 0 0 chr9 23578088 23578142 -100498030 + RMER19C LTR ERVK 1 54 -557 1 764 691 194 204 51 chr9 23578944 23579140 -100497032 - URR1A DNA MER1_type 0 226 1 1 764 286 284 73 44 chr9 23579294 23579500 -100496672 + MusHAL1 LINE L1 277 488 -2224 1 764 1909 99 3 3 chr9 23579496 23579779 -100496393 - L1_Mus2 LINE L1 -297 6269 5987 1 764 2235 64 0 0 chr9 23579779 23580061 -100496111 + L1_Mus2 LINE L1 6284 6565 -1 1 764 415 320 88 20 chr9 23580077 23580326 -100495846 + L1MEg LINE L1 1360 1625 -4617 1 764 307 296 47 28 chr9 23580577 23580914 -100495258 + L1MEg LINE L1 2130 2476 -3371 1 764 603 27 0 0 chr9 23581568 23581641 -100494531 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 764 7374 58 12 2 chr9 23581644 23582963 -100493209 - L1Md_F2 LINE L1 -19 6563 5231 1 764 3442 78 0 2 chr9 23582962 23583440 -100492732 + L1Md_F2 LINE L1 4734 5210 -673 1 764 286 308 22 0 chr9 23583862 23583953 -100492219 - MLT2C1 LTR ERVL -285 112 20 1 764 284 343 78 14 chr9 23584148 23584290 -100491882 + MLT1A LTR MaLR 47 197 -177 1 764 21 57 0 0 chr9 23584448 23584483 -100491689 + AT_rich Low_complexity Low_complexity 1 35 0 1 764 1122 236 131 6 chr9 23585393 23585713 -100490459 - ORR1D1 LTR MaLR -1 373 14 1 764 21 57 0 0 chr9 23585833 23585868 -100490304 + AT_rich Low_complexity Low_complexity 1 35 0 1 764 382 374 16 38 chr9 23585999 23586185 -100489987 + MER20 DNA MER1_type 1 182 -37 1 764 1016 130 177 0 chr9 23586235 23586427 -100489745 + URR1A DNA MER1_type 1 226 0 1 764 25 31 0 0 chr9 23587019 23587051 -100489121 + AT_rich Low_complexity Low_complexity 1 32 0 1 764 411 395 69 7 chr9 23587083 23587386 -100488786 - LTR16E2 LTR ERVL 0 568 247 1 764 1405 219 156 11 chr9 23587523 23587776 -100488396 - MTD LTR MaLR 0 419 117 1 764 945 27 0 0 chr9 23587776 23587888 -100488284 + (TC)n Simple_repeat Simple_repeat 1 112 0 1 764 231 36 0 0 chr9 23587888 23587915 -100488257 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 764 1405 219 156 11 chr9 23587915 23588007 -100488165 - MTD LTR MaLR -303 116 24 1 764 180 77 0 0 chr9 23588007 23588033 -100488139 + (CAA)n Simple_repeat Simple_repeat 1 26 0 1 764 332 345 100 12 chr9 23588461 23588631 -100487541 + MIR SINE MIR 45 229 -33 1 764 207 69 0 0 chr9 23588984 23589013 -100487159 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1 764 275 327 64 18 chr9 23589204 23589313 -100486859 + RSINE1 SINE B4 10 123 -42 1 764 340 294 68 10 chr9 23591954 23592057 -100484115 + PB1D10 SINE Alu 9 117 0 1 764 189 0 0 0 chr9 23592304 23592325 -100483847 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1 765 222 174 0 0 chr9 23594252 23594298 -100481874 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 765 495 329 185 42 chr9 23594650 23595202 -100480970 - MER21B LTR ERV1 -50 813 183 1 765 598 318 68 17 chr9 23595218 23595394 -100480778 + B3 SINE B2 32 216 0 1 765 349 312 134 7 chr9 23595406 23595548 -100480624 - MER21B LTR ERV1 -665 198 39 1 765 782 301 152 19 chr9 23595561 23595880 -100480292 - MTE2a LTR MaLR 0 379 19 1 765 526 233 0 79 chr9 23595880 23596006 -100480166 - MTE2a LTR MaLR -263 116 1 1 765 1265 303 24 16 chr9 23596043 23596415 -100479757 - MTE2b LTR MaLR -4 375 1 1 765 441 0 0 0 chr9 23596805 23596854 -100479318 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 765 299 342 115 37 chr9 23596861 23597052 -100479120 - MLT1F LTR MaLR -26 543 314 1 765 234 376 101 0 chr9 23597079 23597188 -100478984 - MLT1F LTR MaLR -294 275 156 1 765 526 378 59 15 chr9 23598180 23598521 -100477651 - MLT1A0 LTR MaLR 0 365 10 1 765 238 301 102 60 chr9 23599165 23599331 -100476841 - MIRc SINE MIR -27 241 69 1 765 216 150 100 0 chr9 23599696 23599756 -100476416 + L3 LINE CR1 1 66 -4423 1 765 571 312 48 48 chr9 23599933 23600142 -100476030 + MTEb LTR MaLR 8 216 -163 1 765 192 77 0 0 chr9 23600144 23600170 -100476002 + (T)n Simple_repeat Simple_repeat 1 26 0 1 765 612 228 66 13 chr9 23600320 23600471 -100475701 + MTEb LTR MaLR 221 379 0 1 765 1102 261 81 7 chr9 23600471 23600768 -100475404 + MTEb-int LTR MaLR 1 319 -1261 1 765 682 221 41 65 chr9 23600907 23601076 -100475096 - RLTR33 LTR ERVK -125 553 389 1 765 5706 97 110 3 chr9 23601149 23602074 -100474098 + Lx LINE L1 5624 6647 -7 1 765 1204 294 46 24 chr9 23602119 23602492 -100473680 + MTEb-int LTR MaLR 579 959 -621 1 765 713 239 190 23 chr9 23602528 23602855 -100473317 + MTD LTR MaLR 20 419 0 1 765 1527 299 85 30 chr9 23602855 23603424 -100472748 + MTEb-int LTR MaLR 961 1561 -19 1 765 307 318 23 0 chr9 23603441 23603570 -100472602 + Lx9 LINE L1 7278 7409 -235 1 765 265 103 0 0 chr9 23603596 23603635 -100472537 + U3 snRNA snRNA 5 43 -174 1 765 631 78 19 0 chr9 23603702 23603805 -100472367 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 765 258 268 0 10 chr9 23603810 23603908 -100472264 + Lx9 LINE L1 7533 7629 -15 1 765 292 226 16 0 chr9 23603965 23604027 -100472145 + MTEb LTR MaLR 1 63 -316 1 765 261 118 0 0 chr9 23604538 23604589 -100471583 + (T)n Simple_repeat Simple_repeat 1 51 0 1 765 1035 176 0 117 chr9 23604684 23604897 -100471275 + ORR1B1 LTR MaLR 1 188 -206 1 765 531 0 0 0 chr9 23605304 23605363 -100470809 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 765 2065 282 84 106 chr9 23605690 23606077 -100470095 - Lx6 LINE L1 -221 6837 6470 1 765 504 48 0 0 chr9 23606077 23606140 -100470032 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 765 2565 223 61 27 chr9 23606140 23607370 -100468802 - Lx6 LINE L1 -589 6469 5244 1 765 405 0 0 0 chr9 23607370 23607415 -100468757 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 765 7435 181 15 28 chr9 23607424 23608002 -100468170 - Lx6 LINE L1 -1520 4360 3772 1 765 194 0 39 0 chr9 23608002 23608028 -100468144 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 765 1114 66 0 0 chr9 23608031 23608167 -100468005 - B1_Mus1 SINE Alu -12 136 1 1 765 7435 181 15 28 chr9 23608167 23608297 -100467875 - Lx6 LINE L1 -2109 3771 3666 1 765 2115 176 27 55 chr9 23608297 23608771 -100467401 + RMER6B LTR ERVK 1 461 0 1 765 7435 181 15 28 chr9 23608771 23609728 -100466444 - Lx6 LINE L1 -2215 3665 2711 1 765 610 282 32 39 chr9 23609762 23610158 -100466014 + MuRRS4-int LTR ERV1 1412 1970 -5808 1 765 419 335 29 19 chr9 23610312 23610623 -100465549 + MuRRS4-int LTR ERV1 2079 2392 -5209 1 765 547 348 39 33 chr9 23610679 23611136 -100465036 + MuLV-int LTR ERV1 3991 4450 -3156 1 765 1391 318 35 40 chr9 23611498 23612269 -100463903 + MuRRS4-int LTR ERV1 3566 4332 -731 1 765 535 281 0 6 chr9 23612563 23612728 -100463444 + RLTR6-int LTR ERV1 7328 7491 -287 1 765 728 42 10 0 chr9 23612738 23612834 -100463338 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 765 1501 201 104 15 chr9 23613100 23613471 -100462701 + RLTR41 LTR ERV1 1 441 -5 1 765 3060 145 43 0 chr9 23613478 23613801 -100462371 - L1_Mur2 LINE L1 -4050 1827 1487 1 765 2163 46 0 0 chr9 23613801 23614061 -100462111 - L1Md_T LINE L1 0 6582 6323 1 765 3060 189 43 15 chr9 23614061 23614706 -100461466 - L1_Mur2 LINE L1 -4391 1486 893 1 765 720 317 102 14 chr9 23615018 23615312 -100460860 + MTE2b LTR MaLR 60 379 0 1 765 22 0 0 0 chr9 23615480 23615502 -100460670 + AT_rich Low_complexity Low_complexity 1 22 0 1 765 1265 298 18 36 chr9 23615508 23615745 -100460427 - MT2A LTR ERVL -153 380 152 1 765 1886 171 85 6 chr9 23615745 23616109 -100460063 + ORR1B1 LTR MaLR 1 393 -1 1 765 1265 298 18 36 chr9 23616109 23616258 -100459914 - MT2A LTR ERVL -382 151 1 1 765 326 248 0 10 chr9 23616258 23616360 -100459812 - MERVL_2A-int LTR ERVL 0 5761 5661 1 765 283 280 42 8 chr9 23616360 23616377 -100459795 - Ricksha_c DNA MuDR -1701 347 225 1 765 2597 188 27 8 chr9 23617043 23617557 -100458615 + RLTR11A2 LTR ERVK 4 527 0 1 765 5307 112 45 12 chr9 23617766 23618624 -100457548 + RMER17D LTR ERVK 1 887 -2 1 765 26 0 0 0 chr9 23619156 23619182 -100456990 + AT_rich Low_complexity Low_complexity 1 26 0 1 765 1502 159 4 19 chr9 23619773 23620030 -100456142 - ORR1A4 LTR MaLR 0 329 77 1 765 5063 157 18 6 chr9 23620030 23620997 -100455175 - L1_Mur2 LINE L1 -1261 4616 3639 1 765 387 213 0 153 chr9 23620997 23621116 -100455056 + L1_Mur2 LINE L1 4630 4740 -1146 1 765 231 36 0 0 chr9 23621116 23621144 -100455028 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 765 384 213 0 153 chr9 23621144 23621174 -100454998 + L1_Mur2 LINE L1 4741 4765 -1121 1 765 4104 143 20 11 chr9 23621186 23621899 -100454273 + Lx LINE L1 5932 6650 -4 1 765 657 58 0 0 chr9 23621934 23622020 -100454152 + (GAAAA)n Simple_repeat Simple_repeat 5 90 0 1 765 704 294 9 16 chr9 23622067 23622276 -100453896 + B3A SINE B2 16 216 0 1 765 252 0 0 0 chr9 23623533 23623561 -100452611 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 765 231 263 0 17 chr9 23623966 23624024 -100452148 - ID4_ SINE ID -25 58 2 1 765 1159 61 6 6 chr9 23624187 23624196 -100451976 + (GAA)n Simple_repeat Simple_repeat 3 11 0 1 765 1247 84 0 6 chr9 23624196 23624375 -100451797 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 765 1159 61 6 6 chr9 23624375 23624529 -100451643 + (GAA)n Simple_repeat Simple_repeat 3 156 0 1 765 23 33 0 0 chr9 23624532 23624562 -100451610 + AT_rich Low_complexity Low_complexity 1 30 0 1 765 1235 85 15 29 chr9 23624821 23624833 -100451339 - MT-int LTR MaLR -316 782 775 1 765 414 0 0 0 chr9 23624833 23624879 -100451293 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 2 765 1235 85 15 29 chr9 23624879 23625072 -100451100 - MT-int LTR MaLR -324 774 580 1 765 255 269 136 25 chr9 23625194 23625312 -100450860 + MER58B DNA MER1_type 207 337 -4 2 765 235 159 29 14 chr9 23625814 23625884 -100450288 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 2 765 4633 137 31 8 chr9 23627100 23627872 -100448300 + L1VL4 LINE L1 48 837 -5465 2 765 180 0 0 0 chr9 23627881 23627901 -100448271 + (A)n Simple_repeat Simple_repeat 1 20 0 2 765 361 316 26 9 chr9 23628035 23628150 -100448022 - PB1D7 SINE Alu -3 117 1 2 765 2303 244 56 6 chr9 23628251 23628787 -100447385 - RMER15 LTR ERVL 0 575 13 2 765 535 253 13 13 chr9 23628849 23629001 -100447171 + Lx8 LINE L1 6992 7143 -330 2 765 2081 152 39 6 chr9 23629020 23629374 -100446798 + RMER13B LTR ERVK 1 366 -542 2 765 2409 204 58 13 chr9 23629374 23629895 -100446277 - RMER13B LTR ERVK -3 905 362 2 765 435 113 0 0 chr9 23629893 23629955 -100446217 - RMER13B LTR ERVK -846 62 1 2 765 551 153 36 0 chr9 23630121 23630232 -100445940 - Lx5 LINE L1 0 7050 6936 2 765 6086 176 32 15 chr9 23630233 23631434 -100444738 - Lx5 LINE L1 -212 6838 5618 2 765 1778 333 61 32 chr9 23631667 23632048 -100444124 - L1M2 LINE L1 -10 5870 5470 2 765 3077 58 5 2 chr9 23632048 23632442 -100443730 - MTA_Mm LTR MaLR -1 395 1 2 765 7873 77 11 8 chr9 23632442 23633537 -100442635 - MTA_Mm-int LTR MaLR 0 1098 1 2 765 3079 46 21 0 chr9 23633537 23633925 -100442247 - MTA_Mm LTR MaLR 0 396 1 2 765 1824 316 51 25 chr9 23633925 23635549 -100440623 - L1M2 LINE L1 -411 5469 3807 2 765 552 327 80 46 chr9 23635530 23636495 -100439677 - L1M2 LINE L1 -2984 3159 2151 2 765 1312 239 77 88 chr9 23636538 23637163 -100439009 - Lx9 LINE L1 0 7644 7027 2 765 955 316 9 44 chr9 23637240 23637558 -100438614 + MTE2b LTR MaLR 52 358 -21 2 765 1403 229 35 32 chr9 23637588 23637931 -100438241 - RLTR20B3 LTR ERVK -42 535 192 2 765 383 203 13 40 chr9 23637931 23638080 -100438092 + CT-rich Low_complexity Low_complexity 1 145 0 2 765 1178 180 24 52 chr9 23638090 23638107 -100438065 - RLTR20B3 LTR ERVK -329 248 233 2 765 216 0 0 0 chr9 23638107 23638131 -100438041 + (TTCTCC)n Simple_repeat Simple_repeat 1 24 0 2 765 1178 180 24 52 chr9 23638131 23638365 -100437807 - RLTR20B3 LTR ERVK -345 232 4 2 765 377 272 104 0 chr9 23638723 23638848 -100437324 - L1M2 LINE L1 -1220 4923 4786 2 765 234 155 51 10 chr9 23638917 23639015 -100437157 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 765 252 325 23 81 chr9 23639052 23639139 -100437033 - RSINE1 SINE B4 0 165 84 2 765 288 0 0 0 chr9 23639342 23639374 -100436798 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 765 417 121 0 0 chr9 23640654 23640737 -100435435 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 2 765 794 321 36 27 chr9 23640783 23641376 -100434796 + Lx8 LINE L1 5314 5913 -1560 2 765 309 272 159 46 chr9 23641637 23641876 -100434296 + L1MCa LINE L1 1001 1266 -5242 2 765 528 207 132 26 chr9 23641891 23642005 -100434167 + RSINE1 SINE B4 4 129 -36 2 765 1066 93 0 0 chr9 23642046 23642185 -100433987 + B1_Mus1 SINE Alu 1 139 -9 2 765 484 293 38 25 chr9 23642207 23642453 -100433719 + L1MA5A LINE L1 3722 3968 -1912 2 765 487 269 58 10 chr9 23642455 23642662 -100433510 + L1MA5A LINE L1 4302 4548 -1595 2 765 449 323 142 6 chr9 23642675 23642995 -100433177 - MTD LTR MaLR 0 419 3 2 765 978 296 58 12 chr9 23643105 23643624 -100432548 + L1MA5A LINE L1 4714 5256 -887 2 765 2766 166 19 34 chr9 23643689 23644224 -100431948 + RLTR11A2 LTR ERVK 1 527 0 2 765 419 306 138 25 chr9 23644320 23644712 -100431460 + L1MA5A LINE L1 5479 5914 -383 2 765 261 333 0 0 chr9 23644739 23644805 -100431367 + URR1A DNA MER1_type 1 66 -160 2 765 29916 91 11 2 chr9 23644806 23650024 -100426148 + L1Md_F2 LINE L1 318 5585 -298 2 765 7560 73 0 4 chr9 23650025 23651013 -100425159 + L1Md_F2 LINE L1 5587 6570 -12 2 765 613 259 7 7 chr9 23651016 23651156 -100425016 + URR1A DNA MER1_type 42 181 -45 2 765 2002 175 39 16 chr9 23651156 23651539 -100424633 - ORR1B1 LTR MaLR -2 392 1 2 765 3467 216 51 4 chr9 23651539 23652224 -100423948 - ORR1B1-int LTR MaLR 0 1509 793 2 765 534 257 43 7 chr9 23652224 23652365 -100423807 - B1_Mur2 SINE Alu 0 149 4 2 765 306 280 115 39 chr9 23652365 23652378 -100423794 - ORR1B1-int LTR MaLR -1097 695 686 2 765 1962 176 178 13 chr9 23652417 23652888 -100423284 - MT2B LTR ERVL -48 553 5 2 765 266 217 0 16 chr9 23652876 23652937 -100423235 + URR1A DNA MER1_type 160 219 -7 2 765 545 64 13 0 chr9 23652971 23653049 -100423123 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 765 222 62 0 0 chr9 23655124 23655156 -100421016 + (T)n Simple_repeat Simple_repeat 1 32 0 2 765 1841 192 53 3 chr9 23656489 23656828 -100419344 - ORR1B2 LTR MaLR -11 356 1 2 765 3357 203 58 6 chr9 23656828 23657086 -100419086 - ORR1B2-int LTR MaLR 0 1509 1221 2 765 218 32 32 0 chr9 23657086 23657117 -100419055 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 2 765 3357 203 58 6 chr9 23657117 23657548 -100418624 - ORR1B2-int LTR MaLR -289 1220 785 2 765 3264 36 0 0 chr9 23657565 23657954 -100418218 - L1Md_A LINE L1 -1 6581 6193 2 765 6108 29 0 0 chr9 23657954 23658711 -100417461 + L1_Mm LINE L1 4614 5370 -513 2 765 413 220 91 34 chr9 23658711 23658829 -100417343 - B1_Mus2 SINE Alu 0 147 6 2 765 1613 203 3 9 chr9 23658827 23659160 -100417012 - ORR1B2-int LTR MaLR -880 629 299 2 765 286 326 0 0 chr9 23660075 23660167 -100416005 - MLT1B LTR MaLR -26 364 273 2 765 240 258 32 16 chr9 23660220 23660283 -100415889 - MLT1B LTR MaLR -356 111 48 2 765 283 175 100 123 chr9 23661286 23661416 -100414756 - RLTR16 LTR ERVK 0 505 379 2 765 1785 269 31 8 chr9 23661398 23661881 -100414291 - RLTR16 LTR ERVK -11 494 1 2 765 1508 246 65 18 chr9 23662023 23662421 -100413751 - MTD LTR MaLR -2 417 1 2 765 21 0 0 0 chr9 23662781 23662802 -100413370 + AT_rich Low_complexity Low_complexity 1 21 0 2 765 1090 236 15 15 chr9 23663397 23663788 -100412384 + Lx6 LINE L1 859 1249 -6479 2 765 5004 70 18 10 chr9 23663802 23664418 -100411754 + L1_Mus2 LINE L1 5889 6507 -59 2 765 2477 96 75 89 chr9 23664418 23664900 -100411272 + IAPLTR2_Mm LTR ERVK 1 475 0 2 765 5004 70 18 10 chr9 23664900 23664956 -100411216 + L1_Mus2 LINE L1 6508 6566 0 2 765 1836 122 30 52 chr9 23664970 23665299 -100410873 + RLTRETN_Mm LTR ERVK 1 322 0 2 765 25 31 0 0 chr9 23665304 23665336 -100410836 + AT_rich Low_complexity Low_complexity 1 32 0 2 765 9489 201 45 29 chr9 23665336 23665374 -100410798 + Lx6 LINE L1 3211 3254 -2626 2 765 585 42 0 0 chr9 23665374 23665446 -100410726 + (GA)n Simple_repeat Simple_repeat 2 73 0 2 765 9489 201 45 29 chr9 23665446 23666764 -100409408 + Lx6 LINE L1 3255 4621 -1259 2 765 243 0 0 0 chr9 23666764 23666791 -100409381 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 765 9489 201 45 29 chr9 23666791 23666985 -100409187 + Lx6 LINE L1 4622 4796 -1084 2 765 190 51 24 49 chr9 23666985 23667026 -100409146 + (AATTG)n Simple_repeat Simple_repeat 1 40 0 2 765 8335 213 75 26 chr9 23667026 23669559 -100406613 + Lx6 LINE L1 4797 7456 -4 2 765 3794 120 13 28 chr9 23669661 23670262 -100405910 + Lx LINE L1 6058 6649 -5 2 765 390 42 0 0 chr9 23670577 23670625 -100405547 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2 765 583 285 83 18 chr9 23671575 23671793 -100404379 + MLT1A1 LTR MaLR 177 408 0 2 765 5038 56 9 5 chr9 23673403 23674046 -100402126 + L1Md_F2 LINE L1 5933 6578 -4 2 765 1247 267 32 19 chr9 23674253 23674627 -100401545 + MTEb LTR MaLR 1 379 0 2 765 6980 34 0 8 chr9 23674867 23675706 -100400466 - L1Md_F2 LINE L1 -1 6581 5750 2 765 1339 302 37 39 chr9 23675708 23676224 -100399948 - RMER5 LTR ERV1 -19 515 1 2 765 834 11 0 0 chr9 23676944 23677039 -100399133 + (TCTCCC)n Simple_repeat Simple_repeat 3 97 0 2 765 310 213 0 48 chr9 23677491 23677591 -100398581 + MLT1B LTR MaLR 267 356 -18 2 765 256 330 75 19 chr9 23677597 23677863 -100398309 + L1MC4 LINE L1 7121 7401 -641 2 765 5343 224 37 14 chr9 23678426 23679653 -100396519 - Lx5 LINE L1 0 7050 5788 2 765 236 343 82 7 chr9 23679811 23679946 -100396226 + L1M5 LINE L1 5047 5191 -955 2 765 568 329 145 24 chr9 23680468 23680978 -100395194 + L1MC4 LINE L1 487 1058 -5157 2 765 1132 65 0 0 chr9 23681028 23681167 -100395005 + B1_Mus2 SINE Alu 1 139 -8 2 765 271 0 51 0 chr9 23681167 23681206 -100394966 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 765 218 272 0 55 chr9 23681669 23681778 -100394394 + A-rich Low_complexity Low_complexity 5 107 0 2 765 472 301 113 13 chr9 23681953 23682263 -100393909 + L1MC4 LINE L1 1438 1778 -4437 2 765 738 259 72 6 chr9 23682376 23682543 -100393629 + B4A SINE B4 109 286 -6 2 765 234 0 0 0 chr9 23682557 23682583 -100393589 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 765 585 42 0 0 chr9 23682583 23682654 -100393518 + (GA)n Simple_repeat Simple_repeat 2 73 0 2 765 897 211 93 21 chr9 23683579 23683773 -100392399 - RLTR20B2 LTR ERVK 0 563 356 2 765 2889 64 3 0 chr9 23683775 23684150 -100392022 + MTA_Mm LTR MaLR 21 396 0 2 765 1770 164 57 3 chr9 23684150 23684485 -100391687 - RLTR20B2 LTR ERVK -204 356 4 2 765 6376 161 30 3 chr9 23684485 23685711 -100390461 - MYSERV16_I-int LTR ERVK 0 2326 1068 2 765 4360 174 58 32 chr9 23685717 23686658 -100389514 - MYSERV16_I-int LTR ERVK -1471 1371 5 2 765 193 397 43 14 chr9 23687563 23687701 -100388471 - L2 LINE L2 -410 3009 2868 2 765 342 0 0 0 chr9 23687937 23687975 -100388197 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 765 3734 199 24 81 chr9 23689905 23690768 -100385404 - RLTR40 LTR ERVK -3 814 1 2 765 10714 92 8 1 chr9 23690788 23693043 -100383129 + L1_Mus2 LINE L1 4297 6566 0 2 765 603 245 18 36 chr9 23693158 23693323 -100382849 + RSINE1 SINE B4 4 165 0 2 765 32 0 0 0 chr9 23693323 23693355 -100382817 + AT_rich Low_complexity Low_complexity 1 32 0 2 765 414 355 32 19 chr9 23693517 23693675 -100382497 + B4A SINE B4 1 160 -132 2 765 297 0 0 0 chr9 23693809 23693842 -100382330 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 765 438 88 0 0 chr9 23694407 23694475 -100381697 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 2 765 363 268 0 0 chr9 23694475 23694557 -100381615 - PB1D10 SINE Alu -13 104 23 2 765 1582 205 112 23 chr9 23694569 23694954 -100381218 - MTD LTR MaLR 0 419 1 2 765 259 323 108 47 chr9 23695242 23695538 -100380634 - L1MA6 LINE L1 -21 6279 5966 2 765 21 36 0 0 chr9 23696040 23696068 -100380104 + AT_rich Low_complexity Low_complexity 1 28 0 2 765 203 81 0 51 chr9 23697645 23697684 -100378488 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 2 765 285 309 12 0 chr9 23697858 23697942 -100378230 - MER103 DNA DNA -79 87 3 2 765 29906 23 3 0 chr9 23698138 23702372 -100373800 - L1Md_T LINE L1 0 6582 2335 2 765 1328 211 89 30 chr9 23702449 23702663 -100373509 - Lx9 LINE L1 -384 7260 7025 2 765 234 105 0 0 chr9 23702663 23702701 -100373471 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 765 1328 211 89 30 chr9 23702701 23702858 -100373314 - Lx9 LINE L1 -620 7024 6868 2 765 311 244 53 15 chr9 23702948 23703081 -100373091 + L1M2 LINE L1 4279 4416 -1727 2 765 417 230 149 0 chr9 23703107 23703194 -100372978 - RSINE1 SINE B4 -64 101 2 2 765 271 182 18 0 chr9 23703196 23703251 -100372921 + MER53 DNA hAT 138 193 0 2 765 200 34 0 33 chr9 23703313 23703343 -100372829 + (TATATG)n Simple_repeat Simple_repeat 4 32 0 2 765 785 302 23 59 chr9 23703389 23703861 -100372311 + L1M2 LINE L1 4388 4842 -1301 2 765 1619 67 4 78 chr9 23703861 23704103 -100372069 + L1_Mus2 LINE L1 6341 6564 -2 2 765 1164 118 0 0 chr9 23704144 23704314 -100371858 - URR1A DNA MER1_type 0 226 57 3 765 182 245 82 0 chr9 23704767 23704816 -100371356 + L4 LINE RTE 139 191 -1838 3 765 524 265 52 31 chr9 23705051 23705242 -100370930 - RLTR11B LTR ERVK -19 434 240 3 765 759 246 27 159 chr9 23705224 23705557 -100370615 - RLTR11B LTR ERVK -132 321 33 3 765 723 264 42 0 chr9 23706270 23706437 -100369735 + B3A SINE B2 1 174 -24 3 765 440 310 266 23 chr9 23706503 23706842 -100369330 + Lx8 LINE L1 7044 7471 -2 3 765 24 32 0 0 chr9 23706920 23706951 -100369221 + AT_rich Low_complexity Low_complexity 1 31 0 3 765 431 330 110 11 chr9 23707356 23707712 -100368460 - L1ME1 LINE L1 -198 5981 5591 3 765 665 224 80 26 chr9 23707729 23707880 -100368292 - RSINE1 SINE B4 -2 163 5 3 765 552 15 0 0 chr9 23710097 23710162 -100366010 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 765 549 44 0 0 chr9 23710162 23710229 -100365943 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 765 641 226 14 35 chr9 23710229 23710359 -100365813 - B1_Mur4 SINE Alu -21 129 2 3 765 556 325 59 94 chr9 23710843 23711148 -100365024 - ORR1E LTR MaLR -72 302 4 3 765 612 205 0 0 chr9 23711165 23711326 -100364846 + (CA)n Simple_repeat Simple_repeat 1 161 0 3 765 22 0 0 0 chr9 23711708 23711730 -100364442 + AT_rich Low_complexity Low_complexity 1 22 0 3 765 2229 274 71 45 chr9 23713202 23714006 -100362166 - Lx8 LINE L1 -17 7456 6632 3 765 213 65 0 0 chr9 23714365 23714396 -100361776 + (A)n Simple_repeat Simple_repeat 1 31 0 3 765 1702 191 82 0 chr9 23715504 23715859 -100360313 - ORR1C2 LTR MaLR 0 384 1 3 765 1727 345 87 25 chr9 23716215 23717190 -100358982 + Lx8 LINE L1 6191 7226 -247 3 765 307 285 129 34 chr9 23717643 23717821 -100358351 - MIR SINE MIR 0 262 68 3 765 191 364 97 7 chr9 23719300 23719455 -100356717 + MIR SINE MIR 87 255 -7 3 765 258 88 0 0 chr9 23719777 23719811 -100356361 + U2 snRNA snRNA 1 34 -154 3 765 229 312 135 0 chr9 23720283 23720379 -100355793 - MIR SINE MIR -119 143 35 3 765 946 266 60 31 chr9 23722696 23723045 -100353127 - Lx8 LINE L1 -5 7468 7110 3 765 734 89 0 39 chr9 23723172 23723300 -100352872 + Lx LINE L1 6532 6654 0 3 765 245 303 97 38 chr9 23723352 23723537 -100352635 + MIRb SINE MIR 2 197 -71 3 765 23 0 0 0 chr9 23723723 23723746 -100352426 + AT_rich Low_complexity Low_complexity 1 23 0 3 765 340 359 87 0 chr9 23723813 23723997 -100352175 - Cheshire DNA MER1_type -2170 250 51 3 766 422 307 61 6 chr9 23724242 23724406 -100351766 + MamRep605 Unknown Unknown 473 645 -231 3 766 234 0 0 0 chr9 23724465 23724491 -100351681 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 766 213 395 30 75 chr9 23726378 23726512 -100349660 - MER5A DNA MER1_type -60 129 2 3 766 218 321 208 19 chr9 23726535 23726694 -100349478 + MIRb SINE MIR 46 234 -34 3 766 369 267 88 11 chr9 23726968 23727123 -100349049 - MIR SINE MIR -35 233 61 3 766 453 19 0 0 chr9 23727139 23727193 -100348979 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 766 264 77 0 0 chr9 23727258 23727297 -100348875 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 766 22 35 0 0 chr9 23728078 23728107 -100348065 + AT_rich Low_complexity Low_complexity 1 29 0 3 766 261 163 0 0 chr9 23728596 23728645 -100347527 + GA-rich Low_complexity Low_complexity 1 49 0 3 766 988 101 43 0 chr9 23728703 23728841 -100347331 + B1_Mm SINE Alu 2 145 -2 3 766 260 27 27 0 chr9 23728851 23728888 -100347284 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 766 198 0 0 0 chr9 23728892 23728914 -100347258 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 766 382 324 22 7 chr9 23728916 23729053 -100347119 + Lx8 LINE L1 6268 6406 -1067 3 766 2830 91 25 5 chr9 23729055 23729463 -100346709 + L1_Mus3 LINE L1 6204 6619 -19 3 766 395 295 53 24 chr9 23729473 23729643 -100346529 + Lx9 LINE L1 7137 7311 -333 3 766 287 220 127 0 chr9 23729638 23729756 -100346416 + Lx9 LINE L1 6921 7053 -591 3 766 239 315 18 9 chr9 23729748 23729857 -100346315 + Lx9 LINE L1 7316 7425 -219 3 766 231 36 0 0 chr9 23730168 23730196 -100345976 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 766 271 149 0 0 chr9 23733108 23733155 -100343017 + B3 SINE B2 162 208 -8 3 766 432 0 0 0 chr9 23733155 23733203 -100342969 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 766 777 140 0 0 chr9 23733373 23733509 -100342663 + (GGA)n Simple_repeat Simple_repeat 1 136 0 3 766 306 284 0 0 chr9 23733844 23733911 -100342261 - PB1D10 SINE Alu -6 111 45 3 766 236 431 101 18 chr9 23733959 23734245 -100341927 - L2 LINE L2 -418 3001 2692 3 766 208 355 116 21 chr9 23734284 23734474 -100341698 - L2 LINE L2 -832 2587 2380 3 766 196 288 106 0 chr9 23734662 23734728 -100341444 - MIR SINE MIR -98 164 92 3 766 3612 133 18 78 chr9 23735171 23735578 -100340594 - RMER17A LTR ERVK 0 751 378 3 766 965 107 7 0 chr9 23735578 23735727 -100340445 + (GAA)n Simple_repeat Simple_repeat 3 152 0 3 766 3612 133 18 78 chr9 23735727 23736118 -100340054 - RMER17A LTR ERVK -374 377 1 3 766 248 244 0 0 chr9 23738101 23738146 -100338026 - Cheshire DNA MER1_type -2371 49 5 3 766 297 259 14 0 chr9 23738202 23738283 -100337889 + MIR SINE MIR 45 126 -142 3 766 180 309 54 18 chr9 23738652 23738708 -100337464 - MIRb SINE MIR -169 99 42 3 766 286 271 13 151 chr9 23739171 23739323 -100336849 + MLT1A0 LTR MaLR 1 131 -234 3 766 531 232 12 11 chr9 23739324 23739441 -100336731 - MTD LTR MaLR -1 418 243 3 766 1940 175 43 19 chr9 23739472 23739845 -100336327 + MTB_Mm LTR MaLR 26 407 0 3 766 1351 202 104 7 chr9 23739846 23740135 -100336037 - MTD LTR MaLR -102 317 1 3 766 181 146 42 0 chr9 23740362 23740410 -100335762 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 766 4487 10 0 0 chr9 23740772 23741272 -100334900 + L1Md_A LINE L1 6083 6582 0 3 766 1241 226 10 40 chr9 23741343 23741643 -100334529 + MTD LTR MaLR 1 291 -128 3 766 21 0 0 0 chr9 23742000 23742021 -100334151 + AT_rich Low_complexity Low_complexity 1 21 0 3 766 303 242 152 0 chr9 23742545 23742611 -100333561 + RSINE1 SINE B4 1 76 -89 3 766 351 0 0 0 chr9 23742685 23742724 -100333448 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 766 698 207 27 14 chr9 23742883 23743030 -100333142 + B1_Mur2 SINE Alu 1 149 0 3 766 190 111 40 27 chr9 23743030 23743097 -100333075 + A-rich Low_complexity Low_complexity 10 77 0 3 766 381 316 61 108 chr9 23743153 23743366 -100332806 - MT2A LTR ERVL -71 462 260 3 766 666 228 73 45 chr9 23743681 23743860 -100332312 + B3A SINE B2 3 186 -12 3 766 277 348 110 7 chr9 23744415 23744551 -100331621 - MER45C DNA Tip100 -518 435 286 3 766 354 330 70 43 chr9 23744607 23744794 -100331378 - MER45C DNA Tip100 -761 192 1 3 766 790 168 0 8 chr9 23745068 23745194 -100330978 - B1_Mur4 SINE Alu -1 149 25 3 766 233 296 125 14 chr9 23745779 23745851 -100330321 - PB1D10 SINE Alu -37 80 1 3 766 243 325 78 27 chr9 23746035 23746291 -100329881 + L1MC3 LINE L1 7210 7478 -307 3 766 740 289 158 72 chr9 23746291 23746658 -100329514 - MTD LTR MaLR 0 400 1 3 766 268 295 135 16 chr9 23746860 23746877 -100329295 + MLT1A LTR MaLR 159 176 -214 3 766 1046 91 21 0 chr9 23746877 23747020 -100329152 + B1_Mus2 SINE Alu 1 146 -1 3 766 282 276 116 29 chr9 23747020 23747211 -100328961 + MLT1A LTR MaLR 177 505 0 3 766 258 136 0 0 chr9 23748040 23748084 -100328088 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 3 766 500 273 18 0 chr9 23748111 23748221 -100327951 - RSINE1 SINE B4 -52 113 2 3 766 443 252 151 18 chr9 23748691 23749023 -100327149 - L1M2 LINE L1 -1318 4825 4450 3 766 1718 70 0 24 chr9 23749107 23749355 -100326817 - L1Md_F2 LINE L1 -1 6581 6340 3 766 4692 54 0 0 chr9 23749355 23750084 -100326088 + L1Md_F2 LINE L1 5464 6192 -390 3 766 284 212 48 29 chr9 23750084 23750189 -100325983 + B1F SINE Alu 5 147 -2 3 766 827 216 266 77 chr9 23750202 23750635 -100325537 + MT2A LTR ERVL 9 523 -10 3 766 1004 192 0 62 chr9 23751229 23751440 -100324732 - MTC LTR MaLR -55 366 169 3 766 308 190 13 0 chr9 23751487 23751566 -100324606 + (TA)n Simple_repeat Simple_repeat 2 81 0 3 766 387 0 0 0 chr9 23751567 23751610 -100324562 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 766 617 241 45 0 chr9 23751615 23751748 -100324424 - B1_Mur4 SINE Alu -6 144 6 3 766 328 414 14 47 chr9 23752924 23753137 -100323035 - LTR33 LTR ERVL -7 508 303 3 766 192 77 0 0 chr9 23754254 23754280 -100321892 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 3 766 512 260 61 10 chr9 23754938 23755013 -100321159 - Lx9 LINE L1 -143 7501 7419 3 766 459 52 0 0 chr9 23755013 23755071 -100321101 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 766 512 260 61 10 chr9 23755071 23755193 -100320979 - Lx9 LINE L1 -226 7418 7294 3 766 1541 267 82 29 chr9 23755216 23755726 -100320446 - Lx9 LINE L1 -432 7212 6676 3 766 402 318 11 32 chr9 23755787 23755972 -100320200 - Lx7 LINE L1 -1954 5742 5528 3 766 546 283 157 5 chr9 23756141 23756326 -100319846 - B4A SINE B4 -73 219 7 3 766 21 26 0 26 chr9 23756547 23756567 -100319605 + AT_rich Low_complexity Low_complexity 1 20 0 3 766 1225 42 0 0 chr9 23756567 23756709 -100319463 - B1_Mus1 SINE Alu -6 142 1 3 766 21 26 0 26 chr9 23756709 23756727 -100319445 + AT_rich Low_complexity Low_complexity 1 18 0 3 766 272 318 45 27 chr9 23756788 23756898 -100319274 - MLT1G1 LTR MaLR -459 120 9 3 766 309 302 19 9 chr9 23756982 23757089 -100319083 - PB1D10 SINE Alu -8 109 2 3 766 313 374 34 7 chr9 23757207 23757355 -100318817 - L1M4 LINE L1 -1999 4147 3996 3 766 335 275 11 11 chr9 23757598 23757690 -100318482 + PB1D10 SINE Alu 18 109 -8 3 766 615 342 24 31 chr9 23758307 23758600 -100317572 + B4A SINE B4 2 292 0 3 766 507 73 0 0 chr9 23758609 23758677 -100317495 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 766 428 323 97 1 chr9 23758687 23758981 -100317191 + L1M5 LINE L1 5297 5619 -545 4 766 1048 294 16 46 chr9 23758983 23759286 -100316886 - MTE2a LTR MaLR -5 374 81 4 766 279 293 111 0 chr9 23759815 23759914 -100316258 - MTE2a LTR MaLR -304 115 6 4 766 954 160 0 0 chr9 23759959 23760128 -100316044 + GA-rich Low_complexity Low_complexity 3 171 0 4 766 889 318 57 8 chr9 23761474 23761950 -100314222 + L1MA5 LINE L1 5438 5936 -364 4 766 1071 265 70 19 chr9 23762262 23762574 -100313598 + MTD LTR MaLR 8 335 -84 4 766 324 0 0 0 chr9 23762668 23762704 -100313468 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 766 197 146 0 20 chr9 23762948 23762997 -100313175 + T-rich Low_complexity Low_complexity 2 49 0 4 766 2475 149 15 76 chr9 23763016 23763483 -100312689 - RLTR26 LTR ERVK -4 638 201 4 766 3884 119 28 81 chr9 23763483 23764261 -100311911 + RMER17A LTR ERVK 1 737 -14 4 766 1177 168 19 15 chr9 23764293 23764498 -100311674 - RLTR26 LTR ERVK -436 206 1 4 766 7737 97 8 30 chr9 23764709 23765726 -100310446 + Lx3A LINE L1 2459 3480 -2406 4 766 1181 75 0 0 chr9 23765726 23765873 -100310299 + B1_Mm SINE Alu 1 147 0 4 766 7737 97 8 30 chr9 23765873 23766130 -100310042 + Lx3A LINE L1 3481 3705 -2181 4 766 12966 74 9 17 chr9 23766131 23768033 -100308139 - L1Md_F2 LINE L1 -950 4933 3046 4 766 4247 78 0 2 chr9 23768033 23768625 -100307547 + L1Md_F2 LINE L1 4995 5585 -298 4 766 7561 65 8 10 chr9 23768626 23769548 -100306624 + L1Md_F2 LINE L1 5587 6514 -68 4 766 2173 102 132 11 chr9 23769548 23769896 -100306276 + RLTR10 LTR ERVK 1 390 0 4 766 7561 65 8 10 chr9 23769896 23769960 -100306212 + L1Md_F2 LINE L1 6515 6570 -12 4 766 10306 86 26 21 chr9 23769960 23770342 -100305830 + Lx3A LINE L1 4296 4666 -1220 4 766 1093 103 0 0 chr9 23770342 23770488 -100305684 - B1_Mus1 SINE Alu -2 146 1 4 766 10306 97 26 12 chr9 23770488 23772751 -100303421 + Lx3A LINE L1 4667 6978 -3 4 766 509 115 11 0 chr9 23772755 23772842 -100303330 + (TAA)n Simple_repeat Simple_repeat 2 89 0 4 766 6338 181 40 28 chr9 23773246 23774633 -100301539 - RMER12B LTR ERVK -180 1224 1 4 766 512 100 12 0 chr9 23775245 23775325 -100300847 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 766 1193 230 155 103 chr9 23775333 23775798 -100300374 - MT2A LTR ERVL -44 489 1 4 766 377 119 0 0 chr9 23775798 23775857 -100300315 - MERVL_2A-int LTR ERVL 0 5761 5703 4 766 253 152 0 70 chr9 23775857 23775928 -100300244 - ORR1A3-int LTR MaLR -1333 630 565 4 766 798 174 80 0 chr9 23775940 23776153 -100300019 - MERVL_2A-int LTR ERVL -81 5680 5451 4 766 595 37 24 0 chr9 23776161 23776243 -100299929 + (TA)n Simple_repeat Simple_repeat 1 84 0 4 766 457 188 86 38 chr9 23776244 23776349 -100299823 + ORR1B2 LTR MaLR 61 170 -197 4 766 3202 159 18 7 chr9 23776349 23776901 -100299271 - MERVL_2A-int LTR ERVL -448 5313 4756 4 766 1584 171 11 175 chr9 23776904 23777343 -100298829 - ORR1B2 LTR MaLR 0 367 1 4 766 229 261 118 86 chr9 23778077 23778182 -100297990 + B3A SINE B2 79 196 -2 4 766 2110 214 11 43 chr9 23779570 23780015 -100296157 - RMER15 LTR ERVL -144 431 1 4 766 593 272 98 13 chr9 23780512 23780838 -100295334 - ORR1D2 LTR MaLR -2 368 1 4 766 4137 39 25 14 chr9 23783441 23783591 -100292581 + L1Md_F2 LINE L1 6059 6208 -374 4 766 2262 133 131 0 chr9 23783591 23784011 -100292161 - IAPLTR2_Mm LTR ERVK 0 475 1 4 766 4137 39 25 14 chr9 23784011 23784378 -100291794 + L1Md_F2 LINE L1 6209 6582 0 4 766 5103 126 27 9 chr9 23784390 23785952 -100290220 + L1VL1 LINE L1 214 1806 -1892 4 766 33892 49 0 3 chr9 23785957 23791555 -100284617 + L1Md_T LINE L1 1 5589 -297 4 766 8480 32 0 0 chr9 23791555 23792551 -100283621 + L1Md_T LINE L1 5590 6585 0 4 766 12047 140 8 1 chr9 23792554 23794667 -100281505 + L1_Mus4 LINE L1 2010 4138 -1745 4 766 29629 92 16 6 chr9 23794664 23799836 -100276336 + L1Md_F2 LINE L1 358 5585 -298 4 766 7229 81 14 3 chr9 23799837 23800822 -100275350 + L1Md_F2 LINE L1 5587 6582 0 4 766 10458 135 29 7 chr9 23800822 23803279 -100272893 + L1_Mus4 LINE L1 4127 6636 0 4 766 3720 80 6 17 chr9 23803925 23804446 -100271726 - L1_Mus3 LINE L1 -2 6636 6122 4 766 212 247 99 99 chr9 23805034 23805115 -100271057 + RSINE1 SINE B4 73 153 -12 4 766 477 0 0 0 chr9 23805124 23805177 -100270995 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 4 766 1296 79 0 0 chr9 23805177 23805355 -100270817 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 4 766 298 195 23 0 chr9 23806295 23806382 -100269790 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 766 849 47 0 0 chr9 23806414 23806520 -100269652 + (CA)n Simple_repeat Simple_repeat 2 107 0 4 766 297 0 0 0 chr9 23807183 23807216 -100268956 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 766 1760 204 47 11 chr9 23807351 23807713 -100268459 - ORR1C2 LTR MaLR -9 375 1 4 766 748 285 116 37 chr9 23808637 23809122 -100267050 + L1MB1 LINE L1 5345 5867 -301 4 766 3392 79 87 43 chr9 23809156 23809205 -100266967 - LTRIS2 LTR ERV1 0 564 521 4 766 3265 41 18 0 chr9 23809205 23809594 -100266578 - MTA_Mm LTR MaLR 0 396 1 4 766 3392 79 87 43 chr9 23809594 23810084 -100266088 - LTRIS2 LTR ERV1 -44 520 1 4 766 405 0 0 0 chr9 23810108 23810153 -100266019 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 766 333 0 0 0 chr9 23810153 23810189 -100265983 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 766 436 289 13 13 chr9 23810242 23810400 -100265772 + L1MB3 LINE L1 5854 6011 -172 4 766 254 342 0 0 chr9 23810401 23810480 -100265692 + ID_B1 SINE B4 93 171 -53 4 766 200 167 0 45 chr9 23810517 23810561 -100265611 + GA-rich Low_complexity Low_complexity 3 44 0 4 766 3099 214 65 40 chr9 23810930 23811161 -100265011 - Lx5 LINE L1 -3 7047 6812 4 766 186 43 0 0 chr9 23811161 23811184 -100264988 + (CAGG)n Simple_repeat Simple_repeat 4 26 0 4 766 3099 214 65 40 chr9 23811184 23811810 -100264362 - Lx5 LINE L1 -239 6811 6168 4 766 7490 162 16 12 chr9 23811823 23812317 -100263855 - Lx5 LINE L1 -937 6113 5613 4 766 2455 186 45 21 chr9 23812317 23812833 -100263339 - RLTR11A LTR ERVK 0 528 1 4 766 7490 154 19 10 chr9 23812833 23813807 -100262365 - Lx5 LINE L1 -265 5612 4625 4 766 207 0 0 0 chr9 23813807 23813830 -100262342 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 766 7490 154 19 10 chr9 23813830 23814000 -100262172 - Lx5 LINE L1 -1253 4624 4455 4 766 27 62 0 0 chr9 23814163 23814211 -100261961 + AT_rich Low_complexity Low_complexity 1 48 0 4 766 2817 55 3 3 chr9 23814445 23814791 -100261381 - ORR1A1 LTR MaLR 0 346 1 4 766 257 341 116 0 chr9 23815424 23815553 -100260619 - MIRc SINE MIR -86 182 39 4 766 684 302 37 0 chr9 23816376 23816565 -100259607 + B4A SINE B4 81 276 -16 4 766 293 47 0 23 chr9 23816575 23816619 -100259553 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 766 1857 222 22 11 chr9 23817896 23818325 -100257847 - Lx7 LINE L1 -1168 6528 6095 4 766 1204 54 0 0 chr9 23818469 23818616 -100257556 + B1_Mus1 SINE Alu 2 148 0 4 766 588 65 0 0 chr9 23818618 23818695 -100257477 + (GAAAA)n Simple_repeat Simple_repeat 4 80 0 4 766 2101 154 59 0 chr9 23820014 23820371 -100255801 - ORR1C1 LTR MaLR 0 378 1 4 766 1778 190 24 6 chr9 23820685 23821014 -100255158 + ORR1C1 LTR MaLR 3 337 -41 4 766 1313 153 13 9 chr9 23821014 23821245 -100254927 + L1VL1 LINE L1 35 266 -6156 4 766 4441 67 14 0 chr9 23821261 23821832 -100254340 - L1Md_F2 LINE L1 -13 6569 5991 4 766 20506 83 1 6 chr9 23821838 23825523 -100250649 + L1Md_F LINE L1 480 4147 -1736 4 766 378 267 25 33 chr9 23825593 23825713 -100250459 - ORR1E LTR MaLR -2 377 259 4 766 526 289 0 26 chr9 23826192 23826345 -100249827 - ORR1E LTR MaLR -208 151 3 4 766 44 20 0 0 chr9 23826352 23826403 -100249769 + AT_rich Low_complexity Low_complexity 1 51 0 4 766 27 62 0 0 chr9 23827228 23827276 -100248896 + AT_rich Low_complexity Low_complexity 1 48 0 4 766 22 0 0 0 chr9 23827452 23827474 -100248698 + AT_rich Low_complexity Low_complexity 1 22 0 4 766 1236 54 0 0 chr9 23827484 23827632 -100248540 + B1_Mus1 SINE Alu 1 148 0 4 766 262 18 91 0 chr9 23827632 23827687 -100248485 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 4 766 1242 306 54 15 chr9 23827907 23828306 -100247866 - MTE2a LTR MaLR -14 405 2 4 766 257 339 43 17 chr9 23828450 23828567 -100247605 - MTE2a-int LTR MaLR -919 661 542 4 766 994 273 15 164 chr9 23828574 23829043 -100247129 - MTE2a-int LTR MaLR -1179 401 3 4 766 1420 266 19 8 chr9 23829044 23829419 -100246753 - MTE2a LTR MaLR 0 379 1 4 766 6993 84 4 9 chr9 23829497 23830508 -100245664 - L1_Mus4 LINE L1 -1 6635 5630 4 766 2993 202 27 4 chr9 23832911 23833468 -100242704 - Lx5 LINE L1 -3 7047 6478 4 766 2386 167 37 29 chr9 23833623 23834104 -100242068 - Lx4B LINE L1 -132 6926 6442 4 766 1435 270 192 20 chr9 23834296 23834883 -100241289 + Lx8 LINE L1 6641 7328 -145 4 766 1067 303 57 27 chr9 23834891 23835275 -100240897 - MTD LTR MaLR -14 405 20 4 766 318 254 8 34 chr9 23835295 23835413 -100240759 + Lx8 LINE L1 7357 7471 -2 4 766 28 0 0 0 chr9 23835448 23835476 -100240696 + AT_rich Low_complexity Low_complexity 1 28 0 4 766 241 319 111 0 chr9 23835932 23836004 -100240168 - BC1_Mm scRNA scRNA -57 95 16 4 766 1811 208 47 0 chr9 23836681 23837042 -100239130 - ORR1C1 LTR MaLR 0 378 1 4 766 217 286 14 14 chr9 23837051 23837122 -100239050 + CT-rich Low_complexity Low_complexity 2 72 0 4 766 243 88 0 0 chr9 23837728 23837762 -100238410 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 766 558 0 0 0 chr9 23837762 23837823 -100238349 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 766 261 343 30 0 chr9 23838040 23838139 -100238033 + MTEb LTR MaLR 261 362 -17 4 766 189 0 0 0 chr9 23838537 23838558 -100237614 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4 766 267 352 27 33 chr9 23839434 23839584 -100236588 + MIR SINE MIR 60 208 -54 4 766 1093 285 68 37 chr9 23841141 23841845 -100234327 - L1MA4 LINE L1 -398 5902 5180 4 766 364 315 46 25 chr9 23842461 23842744 -100233428 - L1MA4 LINE L1 -1184 4959 4671 4 766 229 357 101 13 chr9 23843083 23843242 -100232930 - MIRb SINE MIR -23 245 73 4 766 375 312 41 61 chr9 23843867 23843905 -100232267 - ID_B1 SINE B4 -1 223 105 4 766 448 301 10 0 chr9 23843905 23844008 -100232164 - PB1D10 SINE Alu -7 110 7 4 766 331 137 27 0 chr9 23844399 23844472 -100231700 + GA-rich Low_complexity Low_complexity 1 75 0 4 766 37453 30 4 7 chr9 23844913 23851095 -100225077 - L1Md_T LINE L1 0 6582 419 4 766 349 317 54 73 chr9 23851867 23852071 -100224101 + MLT1E2 LTR MaLR 1 200 -427 4 766 347 368 105 13 chr9 23852085 23852391 -100223781 + MLT1E2 LTR MaLR 347 680 0 4 766 646 342 102 39 chr9 23852494 23852826 -100223346 + ORR1E LTR MaLR 1 353 -6 4 766 2476 271 63 132 chr9 23853877 23854099 -100222073 + RMER1C Other Other 22 235 -1107 4 766 306 73 0 0 chr9 23854099 23854140 -100222032 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 766 2476 271 63 132 chr9 23854140 23854950 -100221222 + RMER1C Other Other 236 1000 -342 4 95 1424 3 24 0 chr9 23854950 23855283 -100220889 + (GAGAA)n Simple_repeat Simple_repeat 1 341 0 4 767 2476 271 63 132 chr9 23855283 23855661 -100220511 + RMER1C Other Other 1001 1340 -2 4 767 22 88 0 0 chr9 23855774 23855831 -100220341 + AT_rich Low_complexity Low_complexity 1 57 0 4 767 342 104 0 0 chr9 23856597 23856645 -100219527 - L1_Mus2 LINE L1 -298 6268 6221 4 767 2172 63 21 10 chr9 23856645 23856935 -100219237 + L1_Mus2 LINE L1 6274 6566 0 4 767 26 0 0 0 chr9 23857389 23857415 -100218757 + AT_rich Low_complexity Low_complexity 1 26 0 4 767 5042 91 12 1 chr9 23857757 23858513 -100217659 - L1_Mur1 LINE L1 -3475 2411 1648 5 767 8381 107 19 14 chr9 23858707 23860523 -100215649 + Lx3A LINE L1 5154 6975 -6 5 767 327 25 0 0 chr9 23860524 23860564 -100215608 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 5 767 1115 315 84 55 chr9 23861611 23862610 -100213562 + L1MB2 LINE L1 706 1733 -5275 5 767 1530 306 73 72 chr9 23862738 23863795 -100212377 - Lx9 LINE L1 -427 7217 6160 5 767 378 357 11 0 chr9 23863866 23864048 -100212124 + Lx9 LINE L1 7226 7409 -235 5 767 518 43 0 14 chr9 23864050 23864120 -100212052 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 767 596 255 137 60 chr9 23864129 23864579 -100211593 + L1MB2 LINE L1 1839 2352 -4982 5 767 1849 186 62 7 chr9 23864679 23865101 -100211071 - BGLII_A LTR ERVK 0 445 1 5 767 3067 183 86 14 chr9 23865102 23865932 -100210240 - MYSERV16_I-int LTR ERVK -1 2325 1437 5 767 640 285 60 55 chr9 23866160 23866342 -100209830 - B3A SINE B2 -15 183 1 5 767 423 318 61 5 chr9 23866350 23866546 -100209626 + L1MB2 LINE L1 2739 2945 -4063 5 767 721 234 65 11 chr9 23866757 23866943 -100209229 + RMER1C Other Other 101 296 -1046 5 767 910 260 49 16 chr9 23867336 23867582 -100208590 + RMER1C Other Other 745 998 -344 5 767 592 202 6 34 chr9 23867586 23867765 -100208407 + A-rich Low_complexity Low_complexity 2 175 0 5 767 891 151 274 36 chr9 23867768 23868047 -100208125 + RMER1C Other Other 998 1342 0 5 767 256 281 17 17 chr9 23868056 23868114 -100208058 - MTD LTR MaLR -314 105 48 5 767 387 260 32 0 chr9 23868131 23868285 -100207887 + L1MB2 LINE L1 2933 3091 -3917 5 767 350 304 112 12 chr9 23868418 23868588 -100207584 + L1MB2 LINE L1 3261 3447 -3559 5 767 372 295 74 41 chr9 23868592 23868836 -100207336 + L1M3 LINE L1 5527 5778 -405 5 767 285 89 0 0 chr9 23868911 23868956 -100207216 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 5 767 414 283 25 1 chr9 23869253 23869466 -100206706 + L1MB2 LINE L1 3635 3849 -3151 5 767 658 287 153 20 chr9 23869477 23870187 -100205985 + L1MB2 LINE L1 5532 6338 -693 5 767 4829 69 0 13 chr9 23870187 23870820 -100205352 + L1_Mus1 LINE L1 5942 6566 -1 5 767 658 303 127 45 chr9 23870820 23870912 -100205260 + L1MB2 LINE L1 6339 6430 -601 5 767 1900 195 122 28 chr9 23870912 23871359 -100204813 - RLTR31A_Mm LTR ERVK 0 584 104 5 767 513 0 0 0 chr9 23871359 23871416 -100204756 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 767 1900 195 122 28 chr9 23871416 23871502 -100204670 - RLTR31A_Mm LTR ERVK -481 103 3 5 767 658 303 127 45 chr9 23871502 23871583 -100204589 + L1MB2 LINE L1 6431 6506 -525 5 767 3427 33 0 2 chr9 23871583 23871980 -100204192 + MTA_Mm LTR MaLR 1 396 0 5 767 658 303 127 45 chr9 23871980 23872213 -100203959 + L1MB2 LINE L1 6507 6774 -257 5 767 875 206 131 0 chr9 23872213 23872412 -100203760 + URR1B DNA MER1_type 1 225 0 5 767 658 303 127 45 chr9 23872412 23872482 -100203690 + L1MB2 LINE L1 6775 6851 -180 5 767 261 0 0 0 chr9 23872951 23872980 -100203192 + (A)n Simple_repeat Simple_repeat 1 29 0 5 767 4687 54 0 2 chr9 23873504 23874093 -100202079 - L1Md_F2 LINE L1 -1 6581 5994 5 767 576 209 0 0 chr9 23874183 23874312 -100201860 + L1_Mur2 LINE L1 169 297 -6415 5 767 192 351 168 37 chr9 23875166 23875494 -100200678 - L2a LINE L2 -45 3381 3011 5 767 305 267 75 22 chr9 23875810 23875944 -100200228 - Kanga1b DNA Tc2 -167 612 472 5 767 218 233 0 0 chr9 23877045 23877088 -100199084 + T-rich Low_complexity Low_complexity 1 43 0 5 767 236 292 0 0 chr9 23878220 23878268 -100197904 - B4A SINE B4 -239 53 6 5 767 1151 56 28 0 chr9 23878853 23878995 -100197177 - B1_Mus2 SINE Alu 0 147 2 5 767 23 0 0 0 chr9 23879003 23879026 -100197146 + AT_rich Low_complexity Low_complexity 1 23 0 5 767 537 300 52 64 chr9 23879311 23879762 -100196410 + L1_Rod LINE L1 1256 1717 -4130 5 767 6625 84 35 5 chr9 23879762 23880720 -100195452 + Lx3_Mus LINE L1 6017 7003 -6 5 767 537 300 52 64 chr9 23880720 23880860 -100195312 + L1_Rod LINE L1 1718 1840 -4007 5 767 218 377 108 19 chr9 23882329 23882486 -100193686 + MER5B DNA MER1_type 7 177 -1 5 767 356 257 196 20 chr9 23882845 23883095 -100193077 + L1M4 LINE L1 5259 5552 -632 5 767 397 318 111 21 chr9 23883413 23883693 -100192479 + Lx9 LINE L1 6883 7187 -457 5 767 417 355 86 64 chr9 23884257 23884537 -100191635 + B4 SINE B4 2 287 -5 5 767 189 0 0 0 chr9 23884539 23884560 -100191612 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 767 336 333 108 82 chr9 23884684 23884952 -100191220 + MLT1J LTR MaLR 114 388 -124 5 767 341 243 124 124 chr9 23885564 23885757 -100190415 + B3A SINE B2 4 196 -2 5 767 468 62 0 0 chr9 23886628 23886692 -100189480 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 767 2750 42 3 0 chr9 23889410 23889706 -100186466 + ORR1A1 LTR MaLR 1 297 -49 5 767 279 179 32 116 chr9 23889706 23889801 -100186371 - ORR1C1 LTR MaLR 0 384 298 5 767 1386 167 141 25 chr9 23890147 23890430 -100185742 - ORR1C1 LTR MaLR -57 321 6 5 767 911 293 55 30 chr9 23891367 23891638 -100184534 + B4 SINE B4 13 290 -2 5 767 233 235 176 48 chr9 23891669 23891794 -100184378 - MLT1A1 LTR MaLR 0 408 268 5 767 256 307 60 42 chr9 23891945 23892144 -100184028 - MLT-int LTR MaLR -5 1730 1386 5 767 313 218 89 33 chr9 23892115 23892205 -100183967 - MLT-int LTR MaLR -195 1540 1446 5 767 279 277 6 86 chr9 23892362 23892536 -100183636 - L1ME2z LINE L1 -214 6230 6071 5 767 343 333 13 32 chr9 23892733 23892888 -100183284 - L1ME2z LINE L1 -342 5822 5671 5 767 2270 186 80 20 chr9 23893082 23893522 -100182650 + RMER4A LTR ERVK 1 466 0 5 767 398 323 96 21 chr9 23893936 23894312 -100181860 - L1ME2z LINE L1 -1178 4968 4565 5 767 743 129 67 13 chr9 23894725 23894874 -100181298 - Lx2 LINE L1 0 6997 6841 5 767 4711 99 71 3 chr9 23894874 23895586 -100180586 - Lx2 LINE L1 -316 6681 5929 5 767 216 0 0 0 chr9 23896556 23896580 -100179592 + (A)n Simple_repeat Simple_repeat 1 24 0 5 767 623 286 66 16 chr9 23897406 23897662 -100178510 - L1M5 LINE L1 -353 5820 5552 5 767 234 250 0 0 chr9 23897733 23897781 -100178391 - Lx8 LINE L1 -11 7462 7415 5 767 534 294 69 29 chr9 23897857 23898105 -100178067 - L1MA4A LINE L1 -1566 5907 5644 5 767 514 270 76 6 chr9 23898314 23898507 -100177665 - MLT2B4 LTR ERVL -186 228 20 5 767 285 276 103 0 chr9 23898672 23898788 -100177384 - L1M5 LINE L1 -352 5821 5694 5 767 3844 219 49 13 chr9 23899034 23899871 -100176301 - Lx2B LINE L1 -3 6997 6131 5 767 5379 197 82 39 chr9 23899899 23901021 -100175151 + Lx7 LINE L1 6405 7577 -119 5 767 627 14 0 0 chr9 23901021 23901093 -100175079 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 767 5379 197 82 39 chr9 23901093 23901209 -100174963 + Lx7 LINE L1 7578 7695 -1 5 767 867 107 27 0 chr9 23902876 23903026 -100173146 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 5 767 183 42 0 0 chr9 23903991 23904015 -100172157 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 767 270 81 0 0 chr9 23904109 23904146 -100172026 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 767 345 391 4 18 chr9 23906248 23906477 -100169695 - MamRep434 DNA TcMar -13 413 188 5 767 384 59 0 0 chr9 23907929 23907980 -100168192 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 767 33 56 0 0 chr9 23907997 23908051 -100168121 + AT_rich Low_complexity Low_complexity 1 54 0 5 767 437 0 19 0 chr9 23908119 23908172 -100168000 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 767 221 128 21 0 chr9 23908204 23908251 -100167921 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 767 1339 27 0 0 chr9 23908278 23908425 -100167747 + B1_Mus2 SINE Alu 1 147 0 5 767 309 200 93 0 chr9 23908444 23908519 -100167653 - Lx7 LINE L1 -377 7319 7238 5 767 1254 191 31 47 chr9 23908519 23908777 -100167395 - ORR1C1 LTR MaLR 0 378 125 5 767 440 360 46 35 chr9 23909075 23909360 -100166812 - RLTR26 LTR ERVK -260 382 95 5 767 550 152 98 0 chr9 23909433 23909545 -100166627 - ORR1C1 LTR MaLR -251 127 5 5 767 288 302 23 0 chr9 23909549 23909635 -100166537 - Lx7 LINE L1 -454 7242 7155 5 767 238 284 37 12 chr9 23911787 23911869 -100164303 - L2c LINE L2 -38 3349 3266 5 767 1757 244 58 20 chr9 23912290 23912741 -100163431 - Lx7 LINE L1 -425 7271 6804 5 767 295 311 107 32 chr9 23912756 23912972 -100163200 + L1ME1 LINE L1 5943 6174 -5 5 767 2791 60 6 6 chr9 23913613 23913947 -100162225 + L1_Mus1 LINE L1 6234 6567 0 5 767 952 139 6 6 chr9 23915145 23915318 -100160854 + CT-rich Low_complexity Low_complexity 4 176 0 5 767 595 247 51 37 chr9 23915390 23915708 -100160464 - MT2A LTR ERVL -73 460 102 5 767 537 121 0 0 chr9 23916117 23916200 -100159972 + (GA)n Simple_repeat Simple_repeat 1 83 0 5 767 399 224 12 0 chr9 23916200 23916285 -100159887 - MT2A LTR ERVL -445 88 3 5 767 231 36 0 0 chr9 23916912 23916940 -100159232 + (T)n Simple_repeat Simple_repeat 1 28 0 5 767 238 169 14 84 chr9 23916953 23917024 -100159148 - RMER15 LTR ERVL -115 460 395 5 767 7851 11 0 0 chr9 23917065 23917890 -100158282 - L1Md_T LINE L1 0 6582 5758 5 767 6149 21 0 0 chr9 23917890 23918591 -100157581 + L1Md_T LINE L1 5045 5745 -138 5 767 3221 64 8 5 chr9 23918591 23918982 -100157190 - MTA_Mm LTR MaLR -4 392 1 5 767 894 276 24 4 chr9 23919597 23919844 -100156328 + MER2 DNA MER2_type 90 341 -4 5 767 192 97 0 0 chr9 23921225 23921256 -100154916 + (CAGC)n Simple_repeat Simple_repeat 1 31 0 5 767 207 0 0 0 chr9 23921622 23921645 -100154527 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 5 767 279 0 0 0 chr9 23922032 23922063 -100154109 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 767 1436 236 85 26 chr9 23923100 23923488 -100152684 - MTD LTR MaLR -8 411 1 5 767 186 103 0 0 chr9 23923532 23923561 -100152611 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 767 391 288 18 55 chr9 23923811 23923921 -100152251 + RSINE1 SINE B4 60 165 0 5 767 231 146 0 20 chr9 23923937 23923986 -100152186 + A-rich Low_complexity Low_complexity 2 49 0 5 767 441 54 0 0 chr9 23924571 23924627 -100151545 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 767 238 358 21 49 chr9 23925514 23925658 -100150514 + ID_B1 SINE B4 85 224 0 5 767 6198 37 1 8 chr9 23925840 23925903 -100150269 - L1Md_F2 LINE L1 -14 6568 6511 5 767 4754 10 0 0 chr9 23925903 23926396 -100149776 + MT2_Mm LTR ERVL 1 493 0 5 767 6198 37 1 8 chr9 23926396 23927034 -100149138 - L1Md_F2 LINE L1 -72 6510 5872 5 767 2225 54 2 5 chr9 23927034 23927320 -100148852 + L1Md_F2 LINE L1 5632 5943 -416 5 767 21 0 0 0 chr9 23928165 23928186 -100147986 + AT_rich Low_complexity Low_complexity 1 21 0 5 767 340 266 360 19 chr9 23929000 23929211 -100146961 + B4A SINE B4 2 284 -8 5 767 494 98 0 12 chr9 23929219 23929302 -100146870 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 767 473 253 11 0 chr9 23929912 23930007 -100146165 + B4A SINE B4 1 96 -196 5 767 258 312 88 35 chr9 23930007 23930025 -100146147 + B3A SINE B2 1 119 -79 5 767 191 355 81 9 chr9 23930469 23930580 -100145592 + MIR SINE MIR 112 230 -32 5 767 535 250 0 11 chr9 23931682 23931864 -100144308 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 767 838 201 48 16 chr9 23931924 23932129 -100144043 + B2_Mm2 SINE B2 2 193 0 5 767 237 196 0 0 chr9 23933493 23933544 -100142628 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 767 416 324 120 36 chr9 23933602 23933935 -100142237 - Lx8 LINE L1 -2 7471 7111 6 767 636 120 0 0 chr9 23933939 23934039 -100142133 + (TC)n Simple_repeat Simple_repeat 2 101 0 6 767 902 291 72 41 chr9 23934049 23934675 -100141497 - Lx7 LINE L1 -600 7096 6396 6 767 238 220 16 33 chr9 23934693 23934754 -100141418 + B4A SINE B4 168 227 -65 5 767 330 391 60 0 chr9 23934763 23934896 -100141276 - B4A SINE B4 -122 170 30 6 767 273 167 0 0 chr9 23934965 23935019 -100141153 + (TATG)n Simple_repeat Simple_repeat 2 55 0 6 767 308 385 0 0 chr9 23935048 23935157 -100141015 - RSINE1 SINE B4 0 165 57 6 767 4596 95 3 5 chr9 23935216 23935819 -100140353 - Lx3_Mus LINE L1 -5 7004 6403 6 767 482 302 8 0 chr9 23936462 23936591 -100139581 + B1_Mur2 SINE Alu 3 132 -17 6 767 333 0 0 0 chr9 23936595 23936632 -100139540 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 6 767 315 302 7 80 chr9 23936632 23936649 -100139523 + ID_B1 SINE B4 212 223 -1 6 767 274 275 36 48 chr9 23937675 23937759 -100138413 - ID4_ SINE ID 0 83 1 6 767 707 286 43 31 chr9 23937775 23938103 -100138069 + Tigger5 DNA MER2_type 2176 2394 -12 6 767 427 274 71 12 chr9 23938101 23938271 -100137901 - MLT2C2 LTR ERVL -283 181 2 6 767 307 216 52 56 chr9 23938626 23938719 -100137453 - L1ME4a LINE L1 -66 6058 5978 6 767 501 60 0 0 chr9 23939976 23940029 -100136143 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 767 698 62 0 10 chr9 23940029 23940126 -100136046 + (GAA)n Simple_repeat Simple_repeat 3 98 0 6 767 501 60 0 0 chr9 23940126 23940139 -100136033 + (GA)n Simple_repeat Simple_repeat 2 14 0 6 767 2686 76 15 3 chr9 23940448 23940790 -100135382 - Lx LINE L1 -2 6652 6307 6 767 23 54 0 0 chr9 23940829 23940866 -100135306 + AT_rich Low_complexity Low_complexity 1 37 0 6 767 661 271 28 37 chr9 23940907 23941122 -100135050 - ORR1D2 LTR MaLR -157 213 1 6 767 486 319 36 40 chr9 23941122 23941373 -100134799 - L1_Mur3 LINE L1 -552 5328 5079 6 767 186 71 0 0 chr9 23941452 23941480 -100134692 + (A)n Simple_repeat Simple_repeat 1 28 0 6 767 276 324 139 28 chr9 23941882 23942133 -100134039 - LTR85b LTR Gypsy? -160 624 346 6 767 22 0 0 0 chr9 23942632 23942654 -100133518 + AT_rich Low_complexity Low_complexity 1 22 0 6 767 27 29 0 0 chr9 23942891 23942925 -100133247 + AT_rich Low_complexity Low_complexity 1 34 0 6 767 1014 251 93 41 chr9 23943706 23943893 -100132279 - ORR1D2 LTR MaLR -5 365 161 6 767 1934 205 26 23 chr9 23943893 23944282 -100131890 + ORR1B1 LTR MaLR 1 390 -4 6 767 1014 251 93 41 chr9 23944282 23944439 -100131733 - ORR1D2 LTR MaLR -210 160 3 6 767 845 262 141 38 chr9 23944468 23944619 -100131553 - MTD LTR MaLR -87 332 163 6 767 459 0 0 0 chr9 23944619 23944670 -100131502 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 767 845 262 141 38 chr9 23944670 23944808 -100131364 - MTD LTR MaLR -257 162 15 6 767 6740 112 10 3 chr9 23945400 23946364 -100129808 - L1_Mus4 LINE L1 -3 6633 5663 6 767 4423 122 15 23 chr9 23946351 23947525 -100128647 - L1VL4 LINE L1 -2203 1356 193 6 767 2340 282 63 38 chr9 23947771 23948578 -100127594 - Lx9 LINE L1 -451 7193 6367 6 767 23 0 0 0 chr9 23948613 23948636 -100127536 + AT_rich Low_complexity Low_complexity 1 23 0 6 767 222 307 150 45 chr9 23948684 23948817 -100127355 - MIRm SINE MIR -125 151 5 6 767 579 293 0 0 chr9 23949578 23949711 -100126461 + B3A SINE B2 1 133 -65 6 767 1700 244 22 26 chr9 23950101 23950517 -100125655 - MTD LTR MaLR 0 419 6 6 767 258 341 12 0 chr9 23950857 23950942 -100125230 + MER34A LTR ERV1 50 135 -436 6 767 422 360 66 48 chr9 23951515 23951786 -100124386 - MLT1J LTR MaLR -6 506 231 6 767 36494 59 1 4 chr9 23951789 23958459 -100117713 + L1Md_T LINE L1 1 5589 -297 6 767 8947 35 0 2 chr9 23958459 23959457 -100116715 + L1Md_T LINE L1 5590 6585 0 6 767 884 321 104 44 chr9 23959809 23960321 -100115851 - MER21B LTR ERV1 -28 835 293 6 767 2376 168 90 83 chr9 23960321 23960535 -100115637 - RMER4B LTR ERVK 0 585 341 6 767 1243 45 6 22 chr9 23960535 23960718 -100115454 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 767 2376 168 90 83 chr9 23960718 23961068 -100115104 - RMER4B LTR ERVK -245 340 17 6 767 769 335 64 18 chr9 23961076 23961359 -100114813 - MER21B LTR ERV1 -565 298 3 6 767 288 0 0 0 chr9 23962120 23962152 -100114020 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 767 246 32 0 0 chr9 23962366 23962397 -100113775 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 767 494 316 15 15 chr9 23962486 23962621 -100113551 + RSINE1 SINE B4 2 136 -29 6 767 29 28 0 0 chr9 23962621 23962657 -100113515 + AT_rich Low_complexity Low_complexity 1 36 0 6 767 249 117 50 0 chr9 23962711 23962771 -100113401 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 767 2223 137 83 65 chr9 23962773 23963218 -100112954 - RMER16 LTR ERVK -10 523 71 6 767 8408 32 15 0 chr9 23963312 23964457 -100111715 - L1Md_F2 LINE L1 -3 6579 5418 6 767 786 267 69 10 chr9 23964525 23964729 -100111443 - B3 SINE B2 0 216 1 6 767 399 295 9 9 chr9 23964793 23964906 -100111266 - Lx8 LINE L1 -294 7179 7067 6 767 339 274 39 10 chr9 23965081 23965184 -100110988 - MER89 LTR ERV1 -9 550 445 6 767 959 223 62 10 chr9 23965420 23965615 -100110557 - MTC LTR MaLR -216 205 1 6 767 395 186 86 0 chr9 23965880 23965950 -100110222 + tRNA-Lys-AAG tRNA tRNA 1 76 0 6 767 894 306 44 41 chr9 23965978 23966009 -100110163 - BGLII_B LTR ERVK -27 414 381 6 767 274 23 47 0 chr9 23966009 23966052 -100110120 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 767 894 306 44 41 chr9 23966052 23966433 -100109739 - BGLII_B LTR ERVK -61 380 2 6 767 581 318 84 16 chr9 23966442 23966813 -100109359 - L1M3a LINE L1 -4855 1100 705 6 767 785 299 58 58 chr9 23969950 23970326 -100105846 - MLT1B LTR MaLR -4 386 11 6 767 628 313 23 23 chr9 23970836 23971052 -100105120 - B3 SINE B2 0 216 1 6 767 419 267 51 64 chr9 23972578 23972734 -100103438 + MTEa LTR MaLR 218 371 -8 6 767 937 316 110 25 chr9 23972738 23973183 -100102989 + MTEa-int LTR MaLR 1 483 -1097 6 767 838 346 18 36 chr9 23973173 23973503 -100102669 + MTEa-int LTR MaLR 713 1036 -544 6 767 1433 306 12 55 chr9 23973597 23973781 -100102391 + MTEa-int LTR MaLR 1064 1246 -334 6 767 914 246 24 14 chr9 23973781 23973991 -100102181 - B3 SINE B2 -1 215 4 6 767 1433 306 12 55 chr9 23973991 23974292 -100101880 + MTEa-int LTR MaLR 1247 1527 -53 6 767 345 367 37 62 chr9 23974292 23974391 -100101781 + MTEa LTR MaLR 1 99 -260 6 767 4497 132 132 22 chr9 23974391 23975192 -100100980 + RMER17D LTR ERVK 1 889 0 6 767 345 367 37 62 chr9 23975192 23975336 -100100836 + MTEa LTR MaLR 100 238 -121 6 767 12909 69 3 10 chr9 23975502 23977208 -100098964 - L1_Mm LINE L1 -929 4954 3261 6 767 2430 68 0 0 chr9 23977208 23977501 -100098671 + L1_Mus1 LINE L1 6275 6567 0 6 767 329 373 70 35 chr9 23977515 23977910 -100098262 + L2a LINE L2 2758 3163 -263 6 767 714 66 36 21 chr9 23978637 23978777 -100097395 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 6 767 663 274 26 21 chr9 23978780 23978974 -100097198 + MTE2b LTR MaLR 16 210 -169 6 767 188 67 33 0 chr9 23978989 23979019 -100097153 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 767 658 278 22 11 chr9 23979112 23979290 -100096882 + MTE2b LTR MaLR 200 379 0 6 767 280 209 29 15 chr9 23980417 23980485 -100095687 - ID2 SINE ID -9 74 6 6 767 371 281 81 24 chr9 23980498 23980622 -100095550 - B1F SINE Alu -4 145 15 6 767 24 0 0 0 chr9 23980697 23980721 -100095451 + AT_rich Low_complexity Low_complexity 1 24 0 6 767 690 168 0 35 chr9 23980796 23980969 -100095203 + (CATA)n Simple_repeat Simple_repeat 4 170 0 6 767 3963 132 31 104 chr9 23980986 23981857 -100094315 - RMER17D2 LTR ERVK -2 807 1 6 767 434 259 25 9 chr9 23981901 23982230 -100093942 + (CATA)n Simple_repeat Simple_repeat 1 334 0 6 767 238 407 124 18 chr9 23984427 23984652 -100091520 - MLT1G1 LTR MaLR -225 354 106 6 767 1159 149 123 10 chr9 23984828 23985031 -100091141 - URR1A DNA MER1_type 0 226 1 6 768 350 277 99 0 chr9 23987764 23987865 -100088307 + PB1D10 SINE Alu 1 111 -6 6 768 743 246 13 102 chr9 23988129 23988376 -100087796 + ORR1E LTR MaLR 1 227 -140 6 768 375 155 0 0 chr9 23988376 23988460 -100087712 + CT-rich Low_complexity Low_complexity 2 85 0 6 768 406 240 137 45 chr9 23988460 23988664 -100087508 + ORR1E LTR MaLR 163 379 0 6 768 1399 251 85 61 chr9 23989294 23989802 -100086370 + RMER5 LTR ERV1 15 534 0 6 768 241 259 12 47 chr9 23990130 23990215 -100085957 + MLT1A1 LTR MaLR 314 395 -13 6 768 460 260 75 29 chr9 23990836 23991010 -100085162 + L1M6 LINE L1 23 204 -6292 6 768 294 29 0 0 chr9 23991359 23991394 -100084778 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 768 645 14 0 0 chr9 23991677 23991751 -100084421 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 768 405 39 0 0 chr9 23991793 23991844 -100084328 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 768 901 302 59 7 chr9 23992877 23993147 -100083025 - B4A SINE B4 -8 284 1 6 768 234 319 32 21 chr9 23993541 23993634 -100082538 + L1M5 LINE L1 5607 5700 -424 6 768 195 182 68 0 chr9 23995790 23995834 -100080338 + L2 LINE L2 1557 1603 -1816 6 768 819 121 13 20 chr9 23995929 23996081 -100080091 + Lx LINE L1 6472 6622 -32 6 768 318 277 61 18 chr9 23996217 23996331 -100079841 + MIRc SINE MIR 34 152 -116 6 768 2834 134 13 44 chr9 23996668 23997144 -100079028 - RMER6B LTR ERVK 0 461 1 6 768 375 107 573 0 chr9 23997404 23997479 -100078693 - PB1D9 SINE Alu 0 120 3 6 768 218 273 0 0 chr9 23997488 23997532 -100078640 - B3A SINE B2 -154 44 1 6 768 526 286 55 18 chr9 23998684 23998848 -100077324 - LTR55 LTR ERV -323 225 56 6 768 369 253 0 0 chr9 24000411 24000674 -100075498 + GA-rich Low_complexity Low_complexity 1 263 0 1 768 276 318 33 33 chr9 24000838 24000991 -100075181 + Tigger12c DNA MER2_type 39 191 -543 2 768 253 338 13 0 chr9 24002025 24002102 -100074070 + MER5A DNA MER1_type 90 167 -22 3 768 32 26 0 0 chr9 24002368 24002407 -100073765 + AT_rich Low_complexity Low_complexity 1 39 0 4 768 200 304 133 56 chr9 24003862 24004057 -100072115 + L2 LINE L2 1990 2199 -1220 5 768 274 195 0 25 chr9 24004208 24004287 -100071885 + GA-rich Low_complexity Low_complexity 6 82 0 6 768 4978 53 0 7 chr9 24004358 24004966 -100071206 - L1_Mus1 LINE L1 0 6567 5964 7 768 321 326 97 38 chr9 24005468 24005758 -100070414 + L2 LINE L2 2507 2813 -606 5 768 201 264 6 57 chr9 24005883 24006040 -100070132 + (TTATA)n Simple_repeat Simple_repeat 3 151 0 8 768 195 174 23 11 chr9 24006047 24006134 -100070038 + (TATAA)n Simple_repeat Simple_repeat 2 89 0 9 768 32 26 0 0 chr9 24006143 24006182 -100069990 + AT_rich Low_complexity Low_complexity 1 39 0 1 768 1298 171 121 82 chr9 24006535 24006840 -100069332 + ORR1C1 LTR MaLR 48 364 -14 1 768 3208 39 8 0 chr9 24007153 24007538 -100068634 - RLTR10 LTR ERVK -2 388 1 1 768 737 298 104 41 chr9 24007869 24008138 -100068034 - ORR1D2 LTR MaLR -84 286 1 1 768 695 266 114 69 chr9 24008218 24009093 -100067079 - L1M4 LINE L1 -2131 4015 3101 1 768 6819 133 65 14 chr9 24009255 24010435 -100065737 - Lx2B LINE L1 0 7000 5761 1 768 13657 158 72 42 chr9 24010439 24011376 -100064796 - L1_Mur1 LINE L1 -1479 4407 3483 1 768 393 22 0 0 chr9 24011376 24011422 -100064750 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 1 768 13657 158 72 42 chr9 24011422 24012323 -100063849 - L1_Mur1 LINE L1 -2404 3482 2651 1 768 1157 65 0 0 chr9 24012323 24012461 -100063711 - B1_Mm SINE Alu -9 138 1 1 768 13657 158 72 42 chr9 24012461 24013733 -100062439 - L1_Mur1 LINE L1 -3236 2650 1203 1 768 1561 202 33 13 chr9 24013726 24014122 -100062050 - L1VL4 LINE L1 -5513 789 386 1 768 638 276 83 93 chr9 24014312 24014914 -100061258 - L1M4 LINE L1 -3190 2956 2363 1 768 1116 89 0 7 chr9 24014914 24015061 -100061111 - B1_Mus2 SINE Alu -1 146 1 2 768 638 276 83 93 chr9 24015061 24015137 -100061035 - L1M4 LINE L1 -3784 2362 2283 1 768 1636 231 55 13 chr9 24015137 24015535 -100060637 + MTD LTR MaLR 5 419 0 2 768 638 276 83 93 chr9 24015535 24015653 -100060519 - L1M4 LINE L1 -3864 2282 2167 1 768 278 215 0 15 chr9 24015657 24015723 -100060449 + GA-rich Low_complexity Low_complexity 2 66 0 2 768 443 265 152 79 chr9 24016592 24016809 -100059363 - Lx8 LINE L1 -5 7468 7233 2 768 351 113 0 0 chr9 24016809 24016862 -100059310 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 2 768 477 0 0 0 chr9 24016863 24016916 -100059256 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 2 768 443 283 92 59 chr9 24016916 24017150 -100059022 - Lx8 LINE L1 -241 7232 6978 2 768 27 49 0 0 chr9 24017342 24017383 -100058789 + AT_rich Low_complexity Low_complexity 1 41 0 2 768 311 299 85 50 chr9 24017712 24017913 -100058259 + HAL1-2a_MD LINE L1 2122 2329 -695 2 768 1048 84 0 27 chr9 24017993 24018140 -100058032 + B1_Mus1 SINE Alu 1 143 -5 2 768 25 31 0 0 chr9 24018798 24018830 -100057342 + AT_rich Low_complexity Low_complexity 1 32 0 2 768 1163 333 74 61 chr9 24018836 24019879 -100056293 - Lx8 LINE L1 -33 7440 6385 3 768 252 0 0 0 chr9 24020053 24020081 -100056091 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 768 1903 202 16 3 chr9 24020199 24020562 -100055610 - Lx5 LINE L1 -3 7047 6680 3 768 426 285 99 8 chr9 24021102 24021233 -100054939 - Charlie1b DNA MER1_type -379 144 2 3 768 254 330 26 35 chr9 24021234 24021350 -100054822 + MER105 DNA DNA 46 160 -44 3 768 222 333 0 0 chr9 24022593 24022653 -100053519 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 768 2079 121 39 0 chr9 24024723 24025029 -100051143 - ORR1A2 LTR MaLR -8 319 2 3 768 646 316 72 10 chr9 24026298 24026506 -100049666 + B4A SINE B4 72 292 0 3 768 182 333 40 40 chr9 24026956 24027031 -100049141 - L3b LINE CR1 -4 478 404 3 768 315 308 93 23 chr9 24027800 24028059 -100048113 - L1ME2 LINE L1 -233 5931 5655 3 768 398 261 23 0 chr9 24028124 24028212 -100047960 - B1F2 SINE Alu -5 144 55 4 768 488 317 38 34 chr9 24028960 24029161 -100047011 - MER58B DNA MER1_type -80 261 60 4 768 276 30 0 0 chr9 24029161 24029194 -100046978 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 768 488 317 38 34 chr9 24029194 24029227 -100046945 - MER58B DNA MER1_type -282 59 26 4 768 597 275 21 14 chr9 24029311 24029455 -100046717 - RSINE1 SINE B4 -18 147 3 4 768 191 333 21 21 chr9 24029523 24029618 -100046554 - MIRb SINE MIR -8 260 166 4 768 603 269 143 62 chr9 24031128 24031616 -100044556 - L1MC4 LINE L1 -693 7349 6822 4 768 442 322 8 41 chr9 24031778 24031901 -100044271 + MER20B DNA MER1_type 69 187 -596 4 768 345 292 74 8 chr9 24032267 24032388 -100043784 - MIR SINE MIR -5 257 129 4 768 1171 177 25 104 chr9 24033081 24033435 -100042737 - Lx7 LINE L1 -2 7694 7369 4 768 216 0 0 0 chr9 24033441 24033465 -100042707 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 4 768 463 255 0 0 chr9 24033502 24033604 -100042568 - Lx7 LINE L1 -338 7358 7257 4 768 676 109 0 0 chr9 24033614 24033715 -100042457 - Lx LINE L1 -693 5961 5861 5 768 2718 145 36 32 chr9 24033715 24034162 -100042010 - RLTR26 LTR ERVK 0 642 163 5 768 392 51 0 17 chr9 24034162 24034222 -100041950 + (TGG)n Simple_repeat Simple_repeat 2 60 0 5 768 2718 147 47 27 chr9 24034222 24034376 -100041796 - RLTR26 LTR ERVK -480 162 3 5 768 7967 149 22 19 chr9 24034376 24035881 -100040291 - L1_Mur2 LINE L1 -17 5860 4352 5 768 3718 161 56 5 chr9 24035881 24036543 -100039629 + Lx LINE L1 5958 6653 -1 5 768 685 157 0 73 chr9 24036544 24036668 -100039504 + RLTR33 LTR ERVK 521 635 -43 5 768 1976 193 43 27 chr9 24036681 24037124 -100039048 - Lx7 LINE L1 -445 7251 6802 4 768 234 436 15 46 chr9 24037273 24037470 -100038702 - LTR16B1 LTR ERVL -263 217 27 5 768 282 116 0 0 chr9 24038426 24038469 -100037703 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 768 826 79 16 8 chr9 24038797 24038925 -100037247 + (TTCC)n Simple_repeat Simple_repeat 2 130 0 5 768 525 32 0 0 chr9 24038925 24038988 -100037184 + (TTC)n Simple_repeat Simple_repeat 1 63 0 5 768 194 365 37 18 chr9 24039141 24039250 -100036922 - L2b LINE L2 0 3375 3265 6 768 6880 32 1 0 chr9 24039317 24040125 -100036047 + L1Md_F2 LINE L1 5760 6568 -14 6 768 35 0 0 0 chr9 24040125 24040160 -100036012 + AT_rich Low_complexity Low_complexity 1 35 0 6 768 1273 286 166 24 chr9 24040420 24040961 -100035211 + Tigger13a DNA MER2_type 113 730 -41 6 768 449 329 44 25 chr9 24041097 24041256 -100034916 + MER58A DNA MER1_type 1 162 -62 6 768 44 56 0 0 chr9 24041860 24041932 -100034240 + AT_rich Low_complexity Low_complexity 1 72 0 6 768 594 99 0 0 chr9 24042275 24042366 -100033806 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 768 702 296 47 33 chr9 24042373 24042586 -100033586 - B4 SINE B4 -51 241 26 6 768 437 294 142 31 chr9 24042799 24043255 -100032917 + L1ME1 LINE L1 5364 5870 -309 6 768 414 213 47 22 chr9 24043491 24043611 -100032561 + B3A SINE B2 1 125 -70 6 768 381 58 0 0 chr9 24043614 24043666 -100032506 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 768 311 296 0 0 chr9 24043674 24043772 -100032400 + GA-rich Low_complexity Low_complexity 2 99 0 7 768 410 290 139 19 chr9 24043958 24044116 -100032056 - B3A SINE B2 -21 177 1 7 768 24 0 0 0 chr9 24044172 24044196 -100031976 + AT_rich Low_complexity Low_complexity 1 24 0 7 768 341 250 47 35 chr9 24044346 24044516 -100031656 + Lx7 LINE L1 7249 7420 -276 7 768 354 156 0 0 chr9 24044559 24044623 -100031549 + GA-rich Low_complexity Low_complexity 3 66 0 7 768 801 155 28 7 chr9 24044747 24044890 -100031282 + URR1A DNA MER1_type 81 226 0 7 768 2105 36 4 0 chr9 24044950 24045201 -100030971 + L1Md_F2 LINE L1 6330 6581 -1 7 768 223 270 0 16 chr9 24045297 24045361 -100030811 + GA-rich Low_complexity Low_complexity 4 66 0 7 768 581 285 85 16 chr9 24045772 24045961 -100030211 + B3 SINE B2 2 203 -13 7 768 1380 331 84 41 chr9 24046262 24047309 -100028863 - Lx8 LINE L1 -184 7289 6198 8 768 1047 263 54 31 chr9 24047515 24047962 -100028210 + L1_Mur3 LINE L1 4851 5307 -573 8 768 553 296 85 13 chr9 24047964 24048340 -100027832 - L1_Mur3 LINE L1 -2259 3621 3219 8 768 1931 110 21 0 chr9 24048352 24048642 -100027530 - L1_Mus3 LINE L1 -5 6633 6338 8 768 523 102 11 0 chr9 24048642 24048730 -100027442 + L1_Mus3 LINE L1 6249 6337 -301 8 768 2517 259 24 64 chr9 24048756 24049459 -100026713 - L1_Mur3 LINE L1 -2645 3235 2536 8 768 2156 78 3 10 chr9 24049459 24049758 -100026414 - L1Md_F2 LINE L1 -13 6569 6273 8 768 2517 259 24 64 chr9 24049758 24050156 -100026016 - L1_Mur3 LINE L1 -3345 2535 2179 8 768 1106 290 59 51 chr9 24050164 24051093 -100025079 - L1_Mur3 LINE L1 -4014 1866 922 8 768 21 0 0 0 chr9 24051330 24051351 -100024821 + AT_rich Low_complexity Low_complexity 1 21 0 8 768 764 301 113 34 chr9 24052712 24052977 -100023195 + B4A SINE B4 7 292 0 8 768 894 109 0 0 chr9 24053014 24053151 -100023021 + (GGAA)n Simple_repeat Simple_repeat 4 140 0 8 768 214 213 0 47 chr9 24053927 24053991 -100022181 + A-rich Low_complexity Low_complexity 4 64 0 8 768 408 303 15 8 chr9 24054000 24054133 -100022039 + Lx8 LINE L1 6224 6357 -1116 8 768 574 222 194 23 chr9 24054145 24054320 -100021852 - B3 SINE B2 -6 210 6 9 768 1025 319 68 39 chr9 24054325 24054843 -100021329 + Lx8 LINE L1 6347 6879 -594 8 768 584 273 37 21 chr9 24054896 24055087 -100021085 + Lx6 LINE L1 6533 6726 -734 9 768 1285 260 50 23 chr9 24055071 24055572 -100020600 + Lx6 LINE L1 6424 7324 -136 9 768 261 0 0 0 chr9 24055616 24055645 -100020527 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 768 282 211 73 9 chr9 24055660 24055770 -100020402 + Lx6 LINE L1 7321 7437 -23 9 768 341 293 49 21 chr9 24055806 24055949 -100020223 + Lx8 LINE L1 6900 7046 -427 8 768 1997 156 208 38 chr9 24055949 24056429 -100019743 + RMER4B LTR ERVK 22 583 -2 9 768 425 250 22 0 chr9 24056514 24056626 -100019546 + L1MA4 LINE L1 5490 5605 -692 9 768 789 271 72 127 chr9 24056626 24057027 -100019145 + MTE2a LTR MaLR 1 379 0 9 768 441 284 291 33 chr9 24057027 24057280 -100018892 + L1MA4 LINE L1 5606 5928 -372 9 768 256 289 66 0 chr9 24057475 24057551 -100018621 + ID4_ SINE ID 1 81 -2 9 768 489 34 0 0 chr9 24058400 24058459 -100017713 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 768 25 0 0 0 chr9 24058459 24058484 -100017688 + AT_rich Low_complexity Low_complexity 1 25 0 9 768 216 0 0 0 chr9 24058851 24058875 -100017297 + (A)n Simple_repeat Simple_repeat 1 24 0 9 768 283 355 11 11 chr9 24059969 24060060 -100016112 - MLT1F1 LTR MaLR -26 628 538 1 768 311 360 81 29 chr9 24060178 24060387 -100015785 - MLT1F1 LTR MaLR -284 285 66 1 768 1040 346 44 27 chr9 24060606 24061263 -100014909 + L1MA8 LINE L1 31 698 -5844 1 768 496 291 183 45 chr9 24061257 24061995 -100014177 + L1MA8 LINE L1 4401 5240 -1398 1 768 827 256 26 9 chr9 24061998 24062230 -100013942 - L1_Rod LINE L1 -3311 2536 2301 1 768 219 290 35 17 chr9 24062252 24062424 -100013748 + (CCTG)n Simple_repeat Simple_repeat 4 178 0 1 768 324 278 35 17 chr9 24062459 24062631 -100013541 + (CCTG)n Simple_repeat Simple_repeat 4 178 0 1 768 873 242 92 22 chr9 24063238 24063555 -100012617 - L1_Rod LINE L1 -3522 2325 1987 1 768 1097 243 68 22 chr9 24063632 24064002 -100012170 - L1_Rod LINE L1 -6282 1326 940 1 768 2044 272 48 65 chr9 24064021 24064925 -100011247 + Lx9 LINE L1 3710 4597 -1250 1 768 259 130 0 0 chr9 24064926 24064972 -100011200 - MT2A LTR ERVL 0 533 488 1 768 351 0 0 0 chr9 24064979 24065018 -100011154 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 768 2128 218 65 19 chr9 24065129 24065723 -100010449 + Lx9 LINE L1 5259 5915 -1729 1 768 269 256 54 136 chr9 24065736 24065957 -100010215 + Lx9 LINE L1 6123 6325 -1319 1 768 612 226 0 0 chr9 24065980 24066135 -100010037 + (TA)n Simple_repeat Simple_repeat 1 155 0 1 768 3608 279 67 28 chr9 24066258 24067547 -100008625 + Lx9 LINE L1 6301 7639 -5 1 768 813 308 77 12 chr9 24067555 24067959 -100008213 + L1MA8 LINE L1 5243 5672 -969 1 768 455 107 13 0 chr9 24067959 24068034 -100008138 + (TAAA)n Simple_repeat Simple_repeat 1 76 0 1 768 814 236 44 44 chr9 24068122 24068326 -100007846 + B3 SINE B2 1 204 -12 1 768 23 54 0 0 chr9 24068326 24068363 -100007809 + AT_rich Low_complexity Low_complexity 1 37 0 1 768 1939 231 58 13 chr9 24068514 24068554 -100007618 - RLTR20C LTR ERVK -48 486 447 1 768 297 0 0 0 chr9 24068554 24068587 -100007585 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 768 1939 231 58 13 chr9 24068587 24069011 -100007161 - RLTR20C LTR ERVK -88 446 2 1 768 854 283 97 42 chr9 24069033 24069458 -100006714 + L1MA8 LINE L1 5853 6300 -510 1 768 180 246 0 0 chr9 24069483 24069552 -100006620 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 768 604 296 146 15 chr9 24069564 24069893 -100006279 + L1MA8 LINE L1 6285 6656 -133 1 768 748 222 0 0 chr9 24069925 24070069 -100006103 - Lx2B LINE L1 -624 6376 6233 1 768 2318 210 25 19 chr9 24070068 24070543 -100005629 + Lx2B LINE L1 6407 6884 -116 1 768 350 67 0 0 chr9 24070584 24070629 -100005543 - ORR1B2 LTR MaLR -322 45 1 1 768 778 284 135 43 chr9 24070640 24071248 -100004924 + L1M3 LINE L1 3139 3802 -2338 1 768 37262 51 13 4 chr9 24071256 24076732 -99999440 + L1Md_T LINE L1 99 5586 -297 1 768 8588 55 0 0 chr9 24076732 24077755 -99998417 + L1Md_T LINE L1 5587 6582 0 1 768 1623 21 0 16 chr9 24077755 24077999 -99998173 + L1Md_F2 LINE L1 6382 6582 0 1 768 2073 237 84 138 chr9 24078011 24078175 -99997997 + L1_Mus3 LINE L1 220 353 -6285 1 768 5602 121 41 7 chr9 24078175 24079033 -99997139 - RMER17D LTR ERVK -2 887 1 1 768 9873 151 33 69 chr9 24079033 24080276 -99995896 + L1_Mus3 LINE L1 310 1563 -4320 1 768 4810 111 133 40 chr9 24080276 24081086 -99995086 - RMER17D LTR ERVK 0 889 4 1 768 9873 110 5 10 chr9 24081086 24082237 -99993935 + L1_Mus3 LINE L1 1564 2712 -3171 1 768 4832 68 8 2 chr9 24082237 24082828 -99993344 + L1_Mus1 LINE L1 5972 6566 -1 1 768 7505 90 14 3 chr9 24082861 24084338 -99991834 + L1_Mus3 LINE L1 5146 6638 0 1 768 581 165 60 60 chr9 24084434 24084602 -99991570 - L1_Rod LINE L1 -1161 4686 4519 1 768 631 291 142 9 chr9 24084601 24084833 -99991339 - Lx8 LINE L1 -767 6706 6444 1 768 1083 236 19 9 chr9 24085420 24085634 -99990538 + B3 SINE B2 1 216 0 1 768 1442 314 75 42 chr9 24086649 24087556 -99988616 + L1MC2 LINE L1 5387 6323 -21 1 768 539 336 140 31 chr9 24088532 24088979 -99987193 + MLT1D LTR MaLR 1 495 -10 1 768 384 304 130 29 chr9 24089243 24089589 -99986583 - L1M6 LINE L1 -4631 1865 1485 1 768 474 309 57 6 chr9 24090122 24090298 -99985874 + Tigger5 DNA MER2_type 2187 2371 -35 1 768 224 270 16 0 chr9 24092496 24092559 -99983613 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 768 606 28 0 0 chr9 24092563 24092635 -99983537 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 768 216 0 0 0 chr9 24092635 24092658 -99983514 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 768 230 81 27 0 chr9 24093017 24093054 -99983118 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 768 2135 233 59 0 chr9 24093056 24093597 -99982575 - Lx3C LINE L1 -10 6966 6394 1 768 1229 150 32 42 chr9 24093582 24093798 -99982374 + L1_Mur1 LINE L1 5495 5708 -178 1 768 246 128 0 0 chr9 24093859 24093898 -99982274 + (A)n Simple_repeat Simple_repeat 1 39 0 1 768 921 63 116 23 chr9 24095448 24095577 -99980595 - B1_Mus1 SINE Alu -6 142 2 1 768 432 0 0 0 chr9 24096183 24096231 -99979941 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 1 768 591 51 0 0 chr9 24096503 24096582 -99979590 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 768 348 303 104 15 chr9 24096865 24096999 -99979173 - B1F SINE Alu -1 148 3 1 768 210 71 0 0 chr9 24097567 24097595 -99978577 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 1 768 186 71 0 0 chr9 24097616 24097644 -99978528 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 768 6446 44 5 0 chr9 24099564 24100298 -99975874 - L1Md_F3 LINE L1 0 6584 5847 1 768 1363 241 70 25 chr9 24101722 24102080 -99974092 + ORR1D1 LTR MaLR 1 374 0 1 768 22 70 0 0 chr9 24102188 24102231 -99973941 + AT_rich Low_complexity Low_complexity 1 43 0 1 768 200 295 58 58 chr9 24102265 24102402 -99973770 - L2 LINE L2 -748 2671 2535 1 768 538 296 156 57 chr9 24102699 24102982 -99973190 + ORR1E LTR MaLR 5 315 -44 1 768 306 332 87 50 chr9 24103743 24103984 -99972188 - MLT1E1A LTR MaLR -1 679 430 1 768 222 333 82 12 chr9 24104160 24104245 -99971927 + B1F1 SINE Alu 6 96 -53 1 768 360 0 0 0 chr9 24104444 24104484 -99971688 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 768 338 0 0 23 chr9 24104484 24104526 -99971646 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 768 344 315 18 9 chr9 24105117 24105226 -99970946 + RSINE1 SINE B4 3 112 -53 1 768 1300 28 14 0 chr9 24106132 24106277 -99969895 + B1_Mm SINE Alu 1 147 0 1 768 207 0 0 0 chr9 24106280 24106303 -99969869 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 768 272 232 65 35 chr9 24106658 24106828 -99969344 + (TCCA)n Simple_repeat Simple_repeat 1 175 0 1 768 242 287 44 33 chr9 24109075 24109165 -99967007 - MLT1J-int LTR MaLR -647 740 650 1 768 774 0 0 0 chr9 24109190 24109276 -99966896 + (TTCCC)n Simple_repeat Simple_repeat 2 87 0 1 768 315 315 26 18 chr9 24109542 24109655 -99966517 - MLT1J-int LTR MaLR -990 397 284 1 768 509 263 18 0 chr9 24109949 24110063 -99966109 - B3 SINE B2 0 216 101 1 768 426 269 74 37 chr9 24111243 24111378 -99964794 + RSINE1 SINE B4 2 141 -24 1 768 24 0 0 0 chr9 24111399 24111423 -99964749 + AT_rich Low_complexity Low_complexity 1 24 0 1 768 233 365 134 23 chr9 24112249 24112420 -99963752 - MIRb SINE MIR -70 198 9 1 768 304 340 40 69 chr9 24112466 24112640 -99963532 - MER20B DNA MER1_type -611 172 4 1 768 695 53 26 18 chr9 24113733 24113847 -99962325 - L1Md_F3 LINE L1 0 6584 6470 1 768 1600 144 110 18 chr9 24114958 24115284 -99960888 - ORR1B1 LTR MaLR 0 394 39 1 768 302 58 0 55 chr9 24115318 24115373 -99960799 - ORR1B1 LTR MaLR -277 52 1 1 768 451 306 159 13 chr9 24116351 24116665 -99959507 - MER20B DNA MER1_type -36 747 388 1 768 931 247 144 20 chr9 24116712 24117018 -99959154 - MLT2B4 LTR ERVL -212 344 1 1 769 375 378 27 0 chr9 24121565 24121750 -99954422 + L1MEe LINE L1 1835 2024 -4142 1 769 380 282 68 0 chr9 24121750 24121867 -99954305 + ID_B1 SINE B4 79 203 -21 1 769 422 214 0 0 chr9 24121986 24122075 -99954097 - L1MA6 LINE L1 -398 5902 5814 1 769 279 0 0 0 chr9 24122075 24122106 -99954066 + (T)n Simple_repeat Simple_repeat 1 31 0 1 769 246 247 174 12 chr9 24122131 24122217 -99953955 - L1MA6 LINE L1 -517 5774 5675 1 769 558 0 0 0 chr9 24122265 24122327 -99953845 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 1 769 431 322 78 68 chr9 24122332 24122869 -99953303 + L1MEe LINE L1 2055 2587 -3559 1 769 2338 284 114 29 chr9 24123916 24124462 -99951710 + Lx8 LINE L1 1244 1823 -4057 1 769 1245 178 18 14 chr9 24124462 24124684 -99951488 - URR1A DNA MER1_type -3 223 1 1 769 2338 284 114 29 chr9 24124684 24125152 -99951020 + Lx8 LINE L1 1824 2319 -3561 1 769 1292 76 6 3 chr9 24125152 24125471 -99950701 + (CA)n Simple_repeat Simple_repeat 1 320 0 1 769 2338 284 114 29 chr9 24125471 24125892 -99950280 + Lx8 LINE L1 2320 2806 -3074 1 769 386 265 181 10 chr9 24125956 24126160 -99950012 - Lx7 LINE L1 -1711 5985 5747 1 769 692 271 94 65 chr9 24126157 24126433 -99949739 + Lx7 LINE L1 7067 7350 -346 1 769 261 0 0 0 chr9 24126433 24126462 -99949710 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 769 25 51 0 0 chr9 24126619 24126658 -99949514 + AT_rich Low_complexity Low_complexity 1 39 0 1 769 38760 44 0 3 chr9 24126680 24133057 -99943115 - L1Md_T LINE L1 0 6585 132 1 769 445 119 148 65 chr9 24133057 24133165 -99943007 - IAPLTR2a LTR ERVK -51 360 244 1 769 24 53 0 0 chr9 24133168 24133206 -99942966 + AT_rich Low_complexity Low_complexity 1 38 0 1 769 7354 257 58 58 chr9 24133206 24133694 -99942478 + Lx8 LINE L1 2805 3277 -2603 1 769 1680 58 0 19 chr9 24133694 24133905 -99942267 + L1Md_T LINE L1 6376 6582 0 1 769 7354 257 58 58 chr9 24133905 24135657 -99940515 + Lx8 LINE L1 3278 5009 -871 1 769 1044 99 0 0 chr9 24135657 24135808 -99940364 + (GAGAA)n Simple_repeat Simple_repeat 4 154 0 1 769 7354 256 65 53 chr9 24135808 24136695 -99939477 + Lx8 LINE L1 5010 5928 -1545 1 769 1300 247 64 30 chr9 24137000 24137613 -99938559 + RMER1B Other Other 65 470 -596 1 769 2443 306 38 22 chr9 24137628 24138663 -99937509 + Lx8 LINE L1 6297 7387 -86 1 769 1858 201 67 8 chr9 24138663 24139020 -99937152 - ORR1C1 LTR MaLR 0 378 1 1 769 629 324 92 40 chr9 24139020 24139068 -99937104 + Lx8 LINE L1 7388 7444 -29 1 769 22 0 0 0 chr9 24139077 24139099 -99937073 + AT_rich Low_complexity Low_complexity 1 22 0 1 769 520 303 115 13 chr9 24139198 24139432 -99936740 + B4A SINE B4 34 291 -1 1 769 921 298 51 44 chr9 24140001 24140412 -99935760 + BGLII_B LTR ERVK 1 414 -27 1 769 2351 103 94 6 chr9 24140555 24140917 -99935255 - L1_Mus3 LINE L1 -3 6635 6242 1 769 213 279 110 59 chr9 24140962 24141080 -99935092 - MER5A DNA MER1_type -22 167 44 1 769 288 225 127 0 chr9 24141293 24141364 -99934808 + ID4_ SINE ID 2 81 -2 1 769 263 190 68 17 chr9 24141484 24141543 -99934629 + 4.5SRNA scRNA scRNA 25 86 -8 1 769 809 50 0 0 chr9 24141493 24141594 -99934578 + B1_Mm SINE Alu 40 140 -7 1 769 1203 178 100 19 chr9 24141716 24142037 -99934135 - Charlie1 DNA MER1_type -71 2710 2364 1 769 435 344 19 96 chr9 24142042 24142251 -99933921 - Charlie1b DNA MER1_type -321 202 10 1 769 291 298 85 0 chr9 24142982 24143076 -99933096 - RSINE1 SINE B4 -3 162 61 1 769 195 355 84 19 chr9 24143107 24143262 -99932910 + L2a LINE L2 3258 3422 -4 1 769 270 357 59 73 chr9 24143932 24144068 -99932104 + MER94 DNA AcHobo 1 134 0 1 769 216 0 0 0 chr9 24144800 24144824 -99931348 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 769 750 119 15 7 chr9 24145002 24145122 -99931050 + (GA)n Simple_repeat Simple_repeat 1 122 0 2 769 1183 83 0 22 chr9 24145122 24145306 -99930866 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 769 750 119 15 7 chr9 24145306 24145320 -99930852 + (GA)n Simple_repeat Simple_repeat 1 14 0 2 769 302 220 240 0 chr9 24145824 24145924 -99930248 + MLT1M LTR MaLR 88 211 -461 2 769 703 245 197 77 chr9 24147104 24147338 -99928834 + B4 SINE B4 9 270 -22 2 769 180 77 0 0 chr9 24147351 24147377 -99928795 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 769 209 128 0 25 chr9 24147377 24147411 -99928761 + GA-rich Low_complexity Low_complexity 7 40 0 2 769 525 44 0 0 chr9 24147452 24147520 -99928652 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 769 258 105 0 0 chr9 24148586 24148624 -99927548 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 769 282 29 0 0 chr9 24149371 24149406 -99926766 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 769 271 322 16 32 chr9 24149486 24149611 -99926561 - L2a LINE L2 0 3426 3304 2 769 426 20 0 0 chr9 24150938 24150989 -99925183 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 2 769 5378 39 2 0 chr9 24153228 24153850 -99922322 - L1_Mus1 LINE L1 -115 6452 5830 2 769 710 72 70 26 chr9 24153850 24153964 -99922208 + L1_Mus1 LINE L1 6449 6567 0 2 769 2385 130 184 5 chr9 24154430 24154800 -99921372 - RLTR10C LTR ERVK 0 436 1 2 769 282 95 0 0 chr9 24154826 24154868 -99921304 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 769 1342 191 115 55 chr9 24155815 24156163 -99920009 + RMER1B Other Other 44 412 -654 2 769 240 176 176 0 chr9 24156149 24156200 -99919972 + RMER1A Other Other 15 74 -956 2 769 2140 255 74 13 chr9 24156268 24157398 -99918774 + RMER1B Other Other 1 1060 -6 2 769 473 300 124 66 chr9 24158563 24158927 -99917245 - MLT1C LTR MaLR -8 459 75 2 769 521 305 100 4 chr9 24158975 24159225 -99916947 + L1MC3 LINE L1 7511 7784 -1 2 769 1762 280 28 30 chr9 24160631 24161172 -99915000 + ORR1C1-int LTR MaLR 1 540 -830 2 769 652 165 8 42 chr9 24161175 24161295 -99914877 + B1_Mus1 SINE Alu 3 118 -30 2 769 337 265 72 50 chr9 24161295 24161313 -99914859 + ID_B1 SINE B4 84 224 0 2 769 815 161 0 13 chr9 24161318 24161475 -99914697 + GA-rich Low_complexity Low_complexity 4 158 0 2 769 1203 58 6 31 chr9 24161560 24161719 -99914453 + L1_Mus2 LINE L1 6411 6565 -1 2 769 402 177 16 0 chr9 24161827 24161889 -99914283 - B1_Mur4 SINE Alu -87 63 1 2 769 361 235 0 36 chr9 24162026 24162110 -99914062 + ORR1C1-int LTR MaLR 1429 1509 0 2 769 1807 195 36 64 chr9 24162110 24162499 -99913673 + ORR1C1 LTR MaLR 1 378 0 2 769 373 292 200 0 chr9 24162502 24162632 -99913540 + Lx8 LINE L1 6713 6868 -605 2 769 3870 118 22 3 chr9 24162956 24163543 -99912629 + ORR1A2-int LTR MaLR 1366 1963 0 2 769 2139 156 19 0 chr9 24163543 24163863 -99912309 + ORR1A2 LTR MaLR 1 326 -1 2 769 286 430 31 16 chr9 24163884 24164139 -99912033 - L2a LINE L2 -173 3253 2995 2 769 361 333 75 31 chr9 24164226 24164520 -99911652 - MER90a LTR ERV1 -124 490 184 2 769 513 233 25 16 chr9 24164804 24164919 -99911253 + Lx8 LINE L1 6893 7010 -463 2 769 183 42 0 0 chr9 24164919 24164943 -99911229 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2 769 252 146 0 0 chr9 24165018 24165066 -99911106 + Lx8 LINE L1 7419 7466 -7 2 769 202 145 72 7 chr9 24166410 24166462 -99909710 + MIRm SINE MIR 58 121 -155 2 769 26 50 0 0 chr9 24166517 24166557 -99909615 + AT_rich Low_complexity Low_complexity 1 40 0 2 769 1216 207 148 3 chr9 24167731 24168055 -99908117 - MTD LTR MaLR -31 388 18 2 769 14527 61 3 14 chr9 24168116 24169999 -99906173 + L1Md_F2 LINE L1 3726 5586 -297 2 769 7687 50 25 2 chr9 24169999 24170959 -99905213 + L1Md_F2 LINE L1 5587 6568 -14 2 769 1140 196 4 13 chr9 24171010 24171237 -99904935 + URR1A DNA MER1_type 1 225 -1 2 769 198 0 0 0 chr9 24171601 24171623 -99904549 + (CAGTT)n Simple_repeat Simple_repeat 1 22 0 2 769 207 0 0 0 chr9 24172567 24172590 -99903582 + (T)n Simple_repeat Simple_repeat 1 23 0 2 769 408 40 0 0 chr9 24172775 24172825 -99903347 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 769 382 266 23 8 chr9 24173184 24173313 -99902859 - MER65D LTR ERV1 -341 132 2 2 769 230 132 36 36 chr9 24173717 24173772 -99902400 + L1MC5 LINE L1 7693 7747 -214 2 769 3469 183 14 34 chr9 24174698 24174803 -99901369 + RLTR17 LTR ERVK 1 102 -590 2 769 2769 63 0 19 chr9 24174803 24175174 -99900998 - L1Md_F2 LINE L1 0 6582 6219 2 769 3469 183 14 34 chr9 24175174 24175774 -99900398 + RLTR17 LTR ERVK 103 692 0 2 769 1581 89 0 78 chr9 24175822 24176065 -99900107 - L1_Mus2 LINE L1 -2 6564 6341 2 769 378 0 0 0 chr9 24176439 24176481 -99899691 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 769 342 0 0 0 chr9 24176481 24176518 -99899654 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 769 244 236 0 40 chr9 24176580 24176655 -99899517 + PB1 SINE Alu 54 125 -2 2 769 1592 151 208 3 chr9 24176720 24177032 -99899140 - ORR1C1 LTR MaLR 0 378 3 2 769 327 294 39 94 chr9 24177080 24177283 -99898889 - Tigger5 DNA MER2_type 0 2406 2215 2 769 617 295 5 11 chr9 24177291 24177476 -99898696 - B3A SINE B2 -13 185 2 2 769 1241 56 0 6 chr9 24177520 24177700 -99898472 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 769 888 202 31 16 chr9 24177700 24177882 -99898290 - B3 SINE B2 -29 187 3 2 769 354 309 54 6 chr9 24178613 24178827 -99897345 + MLT1B LTR MaLR 1 232 -235 2 769 197 296 9 0 chr9 24178851 24178966 -99897206 + (TG)n Simple_repeat Simple_repeat 1 116 0 2 769 622 217 138 60 chr9 24178966 24179235 -99896937 - B4A SINE B4 0 292 3 2 769 395 285 54 148 chr9 24179242 24179559 -99896613 + ORR1E LTR MaLR 71 357 -2 2 769 325 282 0 12 chr9 24179637 24179723 -99896449 + MLT1B LTR MaLR 380 464 -3 2 769 240 309 62 31 chr9 24180042 24180236 -99895936 - L2 LINE L2 -942 2477 2278 2 769 540 0 0 0 chr9 24180829 24180889 -99895283 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 769 467 232 10 0 chr9 24181617 24181716 -99894456 - ID_B1 SINE B4 -20 204 105 2 769 225 154 0 0 chr9 24182269 24182308 -99893864 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 2 769 643 350 100 47 chr9 24185263 24185734 -99890438 + MLT1D LTR MaLR 1 496 -9 2 769 655 324 52 75 chr9 24187891 24188059 -99888113 + MT2A LTR ERVL 11 166 -367 2 769 1352 138 13 31 chr9 24188059 24188284 -99887888 + URR1B DNA MER1_type 5 225 0 2 769 655 324 52 75 chr9 24188284 24188633 -99887539 + MT2A LTR ERVL 167 516 -17 2 769 1166 173 32 9 chr9 24188634 24188850 -99887322 - URR1B DNA MER1_type 0 225 5 2 769 23 0 0 0 chr9 24189400 24189423 -99886749 + AT_rich Low_complexity Low_complexity 1 23 0 2 769 1066 265 70 21 chr9 24189687 24190018 -99886154 + Lx6 LINE L1 7105 7451 -9 2 769 482 339 73 49 chr9 24190842 24191171 -99885001 + L1MEc LINE L1 35 371 -6029 2 769 512 275 184 85 chr9 24191340 24191671 -99884501 + L1MEc LINE L1 657 1028 -5372 2 769 926 304 7 24 chr9 24191671 24191967 -99884205 + B4A SINE B4 2 292 0 2 769 512 275 184 85 chr9 24191967 24191986 -99884186 + L1MEc LINE L1 1029 1029 -5371 2 769 198 0 0 0 chr9 24191986 24192008 -99884164 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 769 512 278 170 83 chr9 24192008 24192587 -99883585 + L1MEc LINE L1 1029 1721 -4694 2 769 4432 41 0 19 chr9 24192661 24193203 -99882969 - L1Md_F2 LINE L1 -12 6570 6039 2 769 8995 18 1 1 chr9 24193883 24194968 -99881204 - L1Md_A LINE L1 0 6582 5534 2 769 269 267 43 65 chr9 24195014 24195106 -99881066 - ORR1E LTR MaLR 0 359 270 2 769 390 295 71 18 chr9 24197385 24197554 -99878618 - MER3 DNA MER1_type 0 209 32 2 769 583 200 129 15 chr9 24199134 24199266 -99876906 - B1_Mus1 SINE Alu 0 148 2 2 769 1588 186 45 45 chr9 24199503 24199944 -99876228 + MTD LTR MaLR 13 421 0 2 769 1705 173 17 31 chr9 24199984 24200336 -99875836 - ORR1B2 LTR MaLR -8 359 13 2 769 193 57 28 28 chr9 24200477 24200513 -99875659 + (TTATA)n Simple_repeat Simple_repeat 3 38 0 2 769 348 24 0 0 chr9 24200544 24200585 -99875587 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 769 258 122 0 0 chr9 24200585 24200626 -99875546 + MT2B2 LTR ERVL 544 584 0 2 769 289 305 0 28 chr9 24201705 24201813 -99874359 + MER47B DNA MER2_type 13 117 -301 2 769 2143 119 0 0 chr9 24201868 24202187 -99873985 + ORR1A2 LTR MaLR 1 319 -8 2 769 365 305 37 23 chr9 24202206 24202460 -99873712 + MER47B DNA MER2_type 94 418 0 2 769 510 108 0 0 chr9 24203019 24203102 -99873070 + (TATG)n Simple_repeat Simple_repeat 2 84 0 2 769 1620 293 16 112 chr9 24203277 24203954 -99872218 - Lx7 LINE L1 -468 7228 6617 2 769 1182 246 25 99 chr9 24203954 24204356 -99871816 - ORR1D1 LTR MaLR 0 374 3 2 769 410 258 0 0 chr9 24204356 24204453 -99871719 - Lx7 LINE L1 -1404 6292 6196 2 769 531 31 0 0 chr9 24204462 24204527 -99871645 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 769 277 266 23 39 chr9 24204566 24204695 -99871477 + Lx7 LINE L1 7240 7366 -330 2 769 417 39 0 0 chr9 24205171 24205222 -99870950 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 769 1005 120 0 7 chr9 24205222 24205365 -99870807 - B1_Mus1 SINE Alu -4 144 3 2 769 860 207 74 25 chr9 24205841 24206044 -99870128 - B3 SINE B2 0 216 4 2 769 365 288 197 0 chr9 24206078 24206210 -99869962 + RSINE1 SINE B4 1 158 -7 2 769 1779 182 87 8 chr9 24206294 24206675 -99869497 - MTD LTR MaLR -8 411 1 2 769 279 205 82 24 chr9 24207354 24207439 -99868733 - L2a LINE L2 0 3426 3337 2 769 545 76 13 0 chr9 24207599 24207678 -99868494 + (CATAT)n Simple_repeat Simple_repeat 3 82 0 2 769 236 265 0 0 chr9 24208478 24208527 -99867645 - L2a LINE L2 -227 3160 3112 2 769 512 282 152 37 chr9 24208845 24209088 -99867084 - B4A SINE B4 -4 288 18 2 769 404 252 50 42 chr9 24209246 24209366 -99866806 + MT2A LTR ERVL 1 121 -412 2 769 4091 221 107 24 chr9 24209369 24210347 -99865825 - Lx5 LINE L1 -7 7043 5984 2 769 911 227 204 61 chr9 24210368 24210696 -99865476 + MT2A LTR ERVL 99 473 -60 2 769 1649 189 53 25 chr9 24210731 24211090 -99865082 - ORR1B1 LTR MaLR -14 380 12 2 769 455 171 12 0 chr9 24211154 24211176 -99864996 + B1_Mur2 SINE Alu 18 100 -49 2 769 231 212 14 57 chr9 24211176 24211236 -99864936 + RLTR25B LTR ERVK 442 498 -530 2 769 810 31 0 0 chr9 24211236 24211333 -99864839 + (GGAA)n Simple_repeat Simple_repeat 1 97 0 2 769 1165 280 71 98 chr9 24211884 24212489 -99863683 + RLTR18 LTR ERVK 28 616 0 3 769 342 0 0 0 chr9 24212586 24212624 -99863548 + (A)n Simple_repeat Simple_repeat 1 38 0 3 769 205 138 0 0 chr9 24212627 24212656 -99863516 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 3 769 492 262 0 32 chr9 24213586 24213712 -99862460 + MTE2a LTR MaLR 221 342 -37 3 769 515 320 119 0 chr9 24213735 24213988 -99862184 + Lx8 LINE L1 6816 7098 -375 3 769 1868 308 104 21 chr9 24214220 24215112 -99861060 + Lx8 LINE L1 6258 7223 -250 3 769 198 0 0 0 chr9 24215277 24215299 -99860873 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 769 473 187 160 16 chr9 24215642 24215767 -99860405 + B1_Mus1 SINE Alu 5 147 -1 3 769 197 65 32 0 chr9 24217868 24217899 -99858273 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 769 27 87 0 0 chr9 24217971 24218040 -99858132 + AT_rich Low_complexity Low_complexity 1 69 0 3 769 316 344 31 0 chr9 24220002 24220098 -99856074 - B1F1 SINE Alu -49 100 2 3 769 776 169 7 21 chr9 24220137 24220282 -99855890 + B1_Mur2 SINE Alu 7 149 0 3 769 282 261 0 0 chr9 24220484 24220549 -99855623 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 769 525 32 0 0 chr9 24220629 24220692 -99855480 + (GGGGA)n Simple_repeat Simple_repeat 5 67 0 3 769 344 179 13 0 chr9 24220732 24220810 -99855362 + CT-rich Low_complexity Low_complexity 1 79 0 3 769 220 340 62 0 chr9 24221665 24221762 -99854410 + PB1 SINE Alu 3 105 -22 3 769 296 161 16 0 chr9 24221906 24221968 -99854204 + GA-rich Low_complexity Low_complexity 2 64 0 3 769 1685 152 122 14 chr9 24222415 24222775 -99853397 + MTB_Mm LTR MaLR 9 407 0 3 769 1265 185 9 5 chr9 24223062 24223285 -99852887 - URR1B DNA MER1_type 0 225 2 3 769 740 271 15 15 chr9 24223736 24223942 -99852230 - B3 SINE B2 -1 215 10 3 769 2929 25 0 125 chr9 24224216 24224633 -99851539 - RLTR10B2 LTR ERVK 0 365 1 3 769 297 239 48 64 chr9 24224798 24224923 -99851249 - PB1 SINE Alu -3 124 2 3 769 483 220 25 17 chr9 24227784 24227904 -99848268 - RSINE1 SINE B4 -42 123 3 3 769 807 215 7 0 chr9 24228691 24228840 -99847332 + B1_Mur4 SINE Alu 1 150 0 3 769 216 262 0 0 chr9 24229581 24229623 -99846549 + polypyrimidine Low_complexity Low_complexity 2 43 0 3 769 959 220 28 19 chr9 24229631 24229844 -99846328 - Lx8 LINE L1 -179 7294 7080 3 769 399 89 0 0 chr9 24230481 24230537 -99845635 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 769 3256 43 8 8 chr9 24233065 24233461 -99842711 - MTA_Mm LTR MaLR 0 396 1 3 769 777 98 0 0 chr9 24233579 24233691 -99842481 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 3 769 494 288 13 33 chr9 24235605 24235756 -99840416 - B1_Mur1 SINE Alu 0 149 2 3 769 218 29 59 0 chr9 24239596 24239630 -99836542 + (CAGAGA)n Simple_repeat Simple_repeat 4 39 0 3 769 239 0 32 0 chr9 24240230 24240261 -99835911 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 769 309 242 128 18 chr9 24240518 24240682 -99835490 + L1MA8 LINE L1 5907 6088 -203 3 769 325 346 107 3 chr9 24241043 24241353 -99834819 + L1M5 LINE L1 3481 3822 -2324 3 769 1418 141 62 17 chr9 24242288 24242583 -99833589 + RMER21A LTR ERV1 577 875 -72 3 769 25 0 0 0 chr9 24244275 24244300 -99831872 + AT_rich Low_complexity Low_complexity 1 25 0 3 769 27 0 0 0 chr9 24245151 24245178 -99830994 + AT_rich Low_complexity Low_complexity 1 27 0 3 769 458 292 196 30 chr9 24246359 24247676 -99828496 + L1M3 LINE L1 3832 5397 -743 3 769 281 299 273 9 chr9 24247676 24248024 -99828148 + L1MC1 LINE L1 35 474 -6034 3 96 525 287 140 38 chr9 24248025 24248791 -99827381 + L1MC1 LINE L1 3738 4626 -1695 3 770 264 59 0 0 chr9 24248827 24248861 -99827311 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 770 700 276 50 10 chr9 24248891 24249089 -99827083 + B3 SINE B2 1 206 -10 3 770 351 208 43 133 chr9 24249131 24249237 -99826935 + L1MC1 LINE L1 5310 5409 -912 3 770 274 272 12 24 chr9 24249237 24249320 -99826852 + ID4 SINE ID 2 83 0 3 770 351 208 43 133 chr9 24249320 24249446 -99826726 + L1MC1 LINE L1 5410 5521 -800 3 770 1003 295 142 38 chr9 24249589 24250201 -99825971 + L1MC1 LINE L1 5713 6388 -120 3 770 250 157 0 0 chr9 24250222 24250273 -99825899 + L1MC2 LINE L1 6285 6335 -9 3 770 273 260 13 0 chr9 24250374 24250451 -99825721 + L1M3 LINE L1 5546 5623 -560 3 770 227 296 108 40 chr9 24250941 24251191 -99824981 + L1M5 LINE L1 5562 5828 -412 3 770 396 0 0 0 chr9 24252990 24253034 -99823138 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 770 234 62 0 0 chr9 24253034 24253065 -99823107 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 770 234 0 0 0 chr9 24253875 24253901 -99822271 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 770 550 271 127 83 chr9 24254276 24254590 -99821582 + Lx8 LINE L1 7128 7455 -18 3 770 245 324 0 53 chr9 24255008 24255083 -99821089 - Lx8 LINE L1 -144 7329 7259 3 770 304 244 44 37 chr9 24256566 24256702 -99819470 + L1Md_F2 LINE L1 6444 6580 -2 3 770 212 143 0 23 chr9 24258015 24258058 -99818114 + GA-rich Low_complexity Low_complexity 3 44 0 3 770 21 57 0 0 chr9 24258094 24258129 -99818043 + AT_rich Low_complexity Low_complexity 1 35 0 3 770 21 36 0 0 chr9 24258149 24258177 -99817995 + AT_rich Low_complexity Low_complexity 1 28 0 3 770 246 324 41 48 chr9 24258534 24258680 -99817492 - L1M2 LINE L1 -532 5780 5636 3 770 426 311 194 0 chr9 24258953 24259149 -99817023 + Lx8 LINE L1 6840 7073 -400 3 770 416 134 11 58 chr9 24259342 24259429 -99816743 + URR1B DNA MER1_type 143 225 0 3 770 425 322 107 31 chr9 24259596 24260074 -99816098 + L1MC4 LINE L1 7044 7557 -485 3 770 342 45 0 0 chr9 24260537 24260581 -99815591 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 770 188 67 0 32 chr9 24260581 24260611 -99815561 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 770 22 56 0 0 chr9 24260611 24260647 -99815525 + AT_rich Low_complexity Low_complexity 1 36 0 3 770 1841 312 79 33 chr9 24261196 24262579 -99813593 + Lx9 LINE L1 5615 7236 -408 3 770 195 167 0 0 chr9 24262760 24262802 -99813370 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 770 678 209 22 43 chr9 24263199 24263384 -99812788 + B3A SINE B2 2 182 -16 3 770 265 198 10 10 chr9 24263384 24263486 -99812686 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 770 459 330 35 52 chr9 24264252 24264540 -99811632 - Lx7 LINE L1 -524 7172 6890 3 770 333 47 0 0 chr9 24265354 24265397 -99810775 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 770 444 210 125 8 chr9 24265403 24265523 -99810649 - B1_Mur1 SINE Alu -1 148 15 3 770 475 339 44 13 chr9 24266533 24266760 -99809412 - MIR SINE MIR -23 239 6 3 770 328 318 83 0 chr9 24267270 24267402 -99808770 + ID_B1 SINE B4 82 224 0 3 770 207 0 0 0 chr9 24269479 24269502 -99806670 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 770 27 29 0 0 chr9 24269509 24269543 -99806629 + AT_rich Low_complexity Low_complexity 1 34 0 3 770 267 103 0 0 chr9 24269746 24269785 -99806387 + (GGGAGA)n Simple_repeat Simple_repeat 4 42 0 3 770 927 256 39 19 chr9 24269795 24270054 -99806118 - B4A SINE B4 -28 264 1 3 770 355 117 0 0 chr9 24272287 24272347 -99803825 + L1_Mus2 LINE L1 6507 6566 0 3 770 234 314 78 10 chr9 24273834 24273937 -99802235 + MIR SINE MIR 21 130 -132 3 770 546 63 0 0 chr9 24274539 24274618 -99801554 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 770 186 43 0 0 chr9 24274629 24274652 -99801520 + (GGGAGA)n Simple_repeat Simple_repeat 6 28 0 3 770 447 295 32 75 chr9 24275372 24275559 -99800613 - B4 SINE B4 -1 291 113 3 770 502 298 94 0 chr9 24275589 24275760 -99800412 + ORR1D2 LTR MaLR 1 187 -183 3 770 467 209 47 0 chr9 24276742 24276986 -99799186 + (TA)n Simple_repeat Simple_repeat 1 255 0 3 770 741 311 82 8 chr9 24277274 24277530 -99798642 + B4 SINE B4 7 281 -11 3 770 748 158 14 7 chr9 24277912 24278059 -99798113 + URR1A DNA MER1_type 79 226 0 3 770 3476 23 0 0 chr9 24278689 24279085 -99797087 - L1Md_F2 LINE L1 -543 6039 5644 3 770 240 61 0 29 chr9 24279084 24279112 -99797060 + L1Md_F2 LINE L1 6045 6072 -510 3 770 3000 62 5 3 chr9 24279112 24279501 -99796671 + L1Md_F2 LINE L1 6193 6582 0 3 770 316 245 74 56 chr9 24279918 24280026 -99796146 + MT2B LTR ERVL 149 258 -343 3 770 544 203 121 8 chr9 24279940 24280064 -99796108 + B1_Mur4 SINE Alu 6 143 -7 3 770 676 47 19 9 chr9 24280382 24280490 -99795682 - L1Md_F3 LINE L1 0 6584 6476 3 770 1128 71 0 0 chr9 24281376 24281516 -99794656 + B1_Mus1 SINE Alu 1 140 -8 3 770 1158 117 0 0 chr9 24281516 24281695 -99794477 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 770 1123 224 183 11 chr9 24282008 24282364 -99793808 + MTD LTR MaLR 3 419 0 3 770 2237 66 63 0 chr9 24282499 24282817 -99793355 + ORR1A1 LTR MaLR 1 338 -8 3 770 10038 77 15 4 chr9 24282821 24284336 -99791836 + ORR1A1-int LTR MaLR 1 1532 -260 3 770 683 242 55 28 chr9 24284336 24284553 -99791619 - LTRIS4 LTR ERV1 0 507 285 3 770 1849 72 3 31 chr9 24284794 24285080 -99791092 + ORR1A1-int LTR MaLR 1515 1792 0 3 770 2793 67 0 3 chr9 24285080 24285427 -99790745 + ORR1A1 LTR MaLR 1 346 0 3 770 347 305 57 57 chr9 24287056 24287268 -99788904 + ID_B1 SINE B4 2 213 -11 3 770 21 57 0 0 chr9 24288078 24288113 -99788059 + AT_rich Low_complexity Low_complexity 1 35 0 3 770 30 0 0 0 chr9 24288160 24288190 -99787982 + AT_rich Low_complexity Low_complexity 1 30 0 3 770 347 297 76 32 chr9 24288237 24288423 -99787749 + L1MC4 LINE L1 6692 6861 -1181 3 770 600 194 0 0 chr9 24288859 24289003 -99787169 + (TA)n Simple_repeat Simple_repeat 2 145 0 3 770 653 218 284 9 chr9 24291539 24291761 -99784411 - Lx5 LINE L1 0 7050 6768 3 770 2248 216 15 20 chr9 24291755 24292149 -99784023 + Lx5 LINE L1 6307 6704 -346 3 770 3278 53 2 2 chr9 24292149 24292545 -99783627 - MTA_Mm LTR MaLR 0 396 1 3 770 2248 216 15 20 chr9 24292545 24292604 -99783568 + Lx5 LINE L1 6705 6758 -292 3 770 604 277 69 29 chr9 24292873 24293148 -99783024 + B4 SINE B4 1 286 -6 3 770 200 211 14 0 chr9 24293158 24293229 -99782943 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 770 2154 271 83 19 chr9 24294418 24295152 -99781020 + Lx8 LINE L1 6423 7203 -270 4 770 618 334 42 39 chr9 24295160 24295490 -99780682 - ORR1E LTR MaLR -2 357 27 4 770 2423 107 35 47 chr9 24296352 24296754 -99779418 + Lx LINE L1 6243 6639 -15 4 770 858 91 0 0 chr9 24296754 24296875 -99779297 + (GAAAA)n Simple_repeat Simple_repeat 4 124 0 4 770 568 190 0 32 chr9 24296876 24297001 -99779171 + RMER15 LTR ERVL 350 470 -105 4 770 348 24 0 0 chr9 24297884 24297925 -99778247 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 770 232 273 0 15 chr9 24297925 24297992 -99778180 - Lx9 LINE L1 -173 7471 7406 4 770 2093 236 48 58 chr9 24297989 24298575 -99777597 + Lx9 LINE L1 6560 7139 -505 4 770 826 177 144 103 chr9 24299635 24299975 -99776197 + RMER10A LTR ERVL 2 355 -87 4 770 360 0 0 0 chr9 24300478 24300518 -99775654 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 770 245 345 26 0 chr9 24301085 24301201 -99774971 + MIR SINE MIR 10 128 -134 4 770 207 0 0 0 chr9 24302351 24302374 -99773798 + (CACAC)n Simple_repeat Simple_repeat 2 24 0 4 770 243 200 16 32 chr9 24302572 24302634 -99773538 + MER20 DNA MER1_type 109 169 -50 4 770 1899 161 24 109 chr9 24302695 24303106 -99773066 - ORR1C1 LTR MaLR 0 378 3 4 770 374 248 80 0 chr9 24303424 24303537 -99772635 + RSINE1 SINE B4 44 165 0 4 770 483 229 0 0 chr9 24303537 24303655 -99772517 + (CA)n Simple_repeat Simple_repeat 1 118 0 4 770 182 37 37 0 chr9 24303686 24303713 -99772459 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 770 276 250 0 0 chr9 24303787 24303847 -99772325 + tRNA-Ala-GCY_ tRNA tRNA 9 68 -7 4 770 236 296 56 0 chr9 24303847 24303858 -99772314 + ID SINE ID 15 89 -135 4 770 692 253 68 76 chr9 24304130 24304511 -99771661 - MTE2a LTR MaLR -1 378 1 4 770 31 112 0 0 chr9 24307304 24307447 -99768725 + GC_rich Low_complexity Low_complexity 1 143 0 4 770 35 24 0 0 chr9 24307819 24307861 -99768311 + GC_rich Low_complexity Low_complexity 1 42 0 4 770 198 103 0 0 chr9 24308376 24308405 -99767767 + (A)n Simple_repeat Simple_repeat 1 29 0 4 770 427 236 91 76 chr9 24309001 24309198 -99766974 + Lx7 LINE L1 7213 7412 -284 4 770 1162 118 39 0 chr9 24310311 24310489 -99765683 + B2_Mm2 SINE B2 2 186 -9 4 770 3165 155 111 17 chr9 24311878 24312529 -99763643 + RMER6D LTR ERVK 1 712 -8 4 770 842 259 20 28 chr9 24313019 24313269 -99762903 + MTE-int LTR MaLR 1290 1537 -43 4 770 258 250 69 0 chr9 24313561 24313633 -99762539 + MTEa LTR MaLR 290 366 -13 4 770 437 279 25 43 chr9 24315270 24315431 -99760741 - MTEa LTR MaLR -221 158 1 4 770 252 363 107 6 chr9 24317906 24318075 -99758097 - MIRb SINE MIR -41 227 42 4 770 204 208 41 20 chr9 24319697 24319746 -99756426 + GA-rich Low_complexity Low_complexity 5 54 0 4 770 486 61 0 0 chr9 24321827 24321893 -99754279 + (GGAGA)n Simple_repeat Simple_repeat 5 70 0 4 770 1258 235 63 3 chr9 24322611 24322910 -99753262 + MTD LTR MaLR 6 322 -97 4 770 415 190 39 20 chr9 24324106 24324208 -99751964 - B1F SINE Alu -5 144 41 4 770 214 196 50 40 chr9 24324223 24324324 -99751848 + (TTTAA)n Simple_repeat Simple_repeat 5 106 0 4 770 312 303 160 59 chr9 24324432 24325095 -99751077 - L1ME1 LINE L1 -196 5983 5254 4 770 22 0 0 0 chr9 24325490 24325512 -99750660 + AT_rich Low_complexity Low_complexity 1 22 0 4 770 327 177 0 0 chr9 24325545 24325607 -99750565 + GA-rich Low_complexity Low_complexity 2 63 0 4 770 355 261 0 42 chr9 24325607 24325703 -99750469 - ID_B1 SINE B4 -12 212 121 4 770 267 311 29 103 chr9 24325703 24325743 -99750429 - B1F1 SINE Alu -12 137 12 4 770 587 279 68 0 chr9 24326010 24326157 -99750015 + B3A SINE B2 1 157 -41 4 770 306 0 0 0 chr9 24326170 24326204 -99749968 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 770 402 21 0 0 chr9 24326204 24326250 -99749922 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 770 341 320 161 24 chr9 24326280 24326616 -99749556 - L1MD LINE L1 -1990 4156 3775 4 770 249 207 0 0 chr9 24326814 24326901 -99749271 + CT-rich Low_complexity Low_complexity 2 88 0 4 770 186 43 0 0 chr9 24326901 24326924 -99749248 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 770 1590 168 86 19 chr9 24327008 24327433 -99748739 + RMER6D LTR ERVK 1 437 -319 4 770 1054 170 0 29 chr9 24327481 24327687 -99748485 + RMER6D LTR ERVK 418 617 -73 4 770 4168 9 0 0 chr9 24327687 24328149 -99748023 + L1Md_A LINE L1 5125 5586 -297 4 770 8893 18 0 0 chr9 24328150 24329145 -99747027 + L1Md_A LINE L1 5588 6582 0 4 770 484 143 0 0 chr9 24329145 24329229 -99746943 + RMER6D LTR ERVK 607 690 0 4 770 25502 37 5 2 chr9 24330007 24335208 -99740964 + L1Md_T LINE L1 298 5589 -297 4 770 8380 38 0 0 chr9 24335208 24336204 -99739968 + L1Md_T LINE L1 5590 6585 0 4 770 2579 216 23 20 chr9 24336628 24337186 -99738986 + RLTR20B2 LTR ERVK 1 560 0 4 770 1370 51 0 0 chr9 24337855 24338030 -99738142 - L1Md_T LINE L1 -1 6581 6407 4 770 334 220 128 20 chr9 24339199 24339301 -99736871 + MLT1B LTR MaLR 3 115 -275 4 770 6509 47 1 5 chr9 24339361 24340213 -99735959 + L1Md_F3 LINE L1 4738 5586 -297 4 770 7826 41 16 2 chr9 24340214 24341184 -99734988 + L1Md_F3 LINE L1 5588 6570 -14 4 770 424 296 112 12 chr9 24343422 24343798 -99732374 - L1_Mur3 LINE L1 -512 5779 5320 4 770 256 248 13 94 chr9 24343944 24344187 -99731985 - L1_Mur3 LINE L1 -1050 5096 4849 4 770 1623 213 59 10 chr9 24344333 24344740 -99731432 - Lx9 LINE L1 -88 7556 7130 4 770 2835 186 33 4 chr9 24344743 24345256 -99730916 - RLTR12B LTR ERVK 0 528 1 4 770 1883 193 150 17 chr9 24345261 24345773 -99730399 - Lx9 LINE L1 -517 7127 6548 4 770 499 304 51 4 chr9 24345930 24346115 -99730057 + RMER20B LTR ERVK 187 403 -224 4 770 356 278 101 20 chr9 24346317 24346416 -99729756 + RMER20B LTR ERVK 482 588 -39 4 770 977 53 53 7 chr9 24346451 24346603 -99729569 + SYNREP_MM Satellite Satellite 87 245 -21 4 770 2169 216 141 25 chr9 24346658 24347870 -99728302 - Lx9 LINE L1 -1104 6540 5041 4 770 3435 191 25 5 chr9 24347900 24348530 -99727642 - Lx5 LINE L1 0 7050 6408 4 770 3141 55 2 7 chr9 24348938 24349359 -99726813 + L1Md_F2 LINE L1 5167 5585 -298 4 770 7951 52 7 0 chr9 24349360 24350347 -99725825 + L1Md_F2 LINE L1 5587 6580 -2 4 770 5864 215 72 38 chr9 24350357 24352497 -99723675 - Lx9 LINE L1 -2283 3564 1354 4 770 374 299 117 8 chr9 24352504 24352921 -99723251 - L1_Mur3 LINE L1 -3942 1905 1436 4 770 34219 68 1 14 chr9 24352990 24359139 -99717033 - L1Md_F2 LINE L1 -12 6570 505 4 770 2048 112 17 20 chr9 24359528 24359859 -99716313 - L1_Mur2 LINE L1 -804 5073 4743 4 770 7074 32 0 5 chr9 24359859 24360685 -99715487 + RLTR13B2 LTR ERVK 1 822 0 4 770 2048 112 17 20 chr9 24360685 24360708 -99715464 - L1_Mur2 LINE L1 -1135 4742 4720 4 770 585 187 32 8 chr9 24360716 24360840 -99715332 - Lx3C LINE L1 -1074 5902 5776 4 770 2731 169 56 32 chr9 24360838 24361431 -99714741 + Lx4B LINE L1 5606 6212 -846 4 770 26773 135 14 9 chr9 24363379 24369490 -99706682 - L1_Mus3 LINE L1 -1 6637 519 4 770 1023 148 66 0 chr9 24369527 24369710 -99706462 - B2_Mm2 SINE B2 0 195 1 4 770 449 325 38 38 chr9 24369746 24369956 -99706216 + MTD LTR MaLR 1 210 -209 4 770 276 271 57 0 chr9 24369956 24370026 -99706146 + B2_Mm2 SINE B2 1 74 -121 4 770 389 293 41 41 chr9 24370007 24370128 -99706044 + B3 SINE B2 84 204 -12 4 770 567 180 78 8 chr9 24370268 24370397 -99705775 + MTD LTR MaLR 268 405 -14 4 770 298 331 19 0 chr9 24370603 24370757 -99705415 - L1M5 LINE L1 -563 5616 5460 4 770 234 256 89 44 chr9 24371130 24371265 -99704907 - L1MC LINE L1 -283 5896 5756 4 770 2343 212 28 69 chr9 24371285 24372413 -99703759 + L1_Mus2 LINE L1 263 1208 -5433 4 770 2264 42 0 7 chr9 24372414 24372701 -99703471 + RLTRETN_Mm LTR ERVK 38 322 0 4 770 17098 107 10 21 chr9 24372701 24374699 -99701473 + L1_Mus2 LINE L1 1170 3182 -2704 4 770 1249 116 92 5 chr9 24374699 24374916 -99701256 + L1Md_F2 LINE L1 6345 6580 -2 4 770 17098 109 11 23 chr9 24374916 24375880 -99700292 + L1_Mus2 LINE L1 3183 4097 -1789 4 770 2170 118 15 6 chr9 24375881 24376215 -99699957 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 770 19901 62 24 24 chr9 24376215 24378981 -99697191 + IAPEz-int LTR ERVK 8 2774 -3707 4 770 2339 21 0 0 chr9 24379004 24379286 -99696886 + IAPEz-int LTR ERVK 4076 4357 -2124 4 96 5709 48 24 1 chr9 24379277 24380031 -99696141 + IAPEz-int LTR ERVK 5709 6479 -2 4 771 2170 118 15 6 chr9 24380033 24380367 -99695805 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 771 11623 97 6 4 chr9 24380367 24382837 -99693335 + L1_Mus2 LINE L1 4094 6568 -1 4 771 770 270 54 35 chr9 24382914 24382961 -99693211 - B3 SINE B2 -9 207 153 4 771 405 0 0 0 chr9 24382961 24383006 -99693166 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 771 443 18 0 18 chr9 24383006 24383062 -99693110 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 771 836 233 8 1 chr9 24383062 24383216 -99692956 - B3A SINE B2 -64 152 1 4 771 386 259 125 19 chr9 24383271 24383595 -99692577 - L1MC LINE L1 -586 5593 5243 4 771 263 238 85 30 chr9 24383609 24383774 -99692398 - L1MC LINE L1 -3171 2975 2802 4 771 1106 133 113 0 chr9 24384832 24385035 -99691137 - URR1A DNA MER1_type 0 226 1 4 771 421 303 87 41 chr9 24386438 24386610 -99689562 + B4A SINE B4 113 292 0 4 771 669 66 0 0 chr9 24386899 24386990 -99689182 + (TC)n Simple_repeat Simple_repeat 1 91 0 4 771 225 65 0 0 chr9 24387122 24387153 -99689019 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 771 497 320 58 39 chr9 24387572 24387587 -99688585 - RSINE1 SINE B4 -5 160 147 4 771 330 26 0 0 chr9 24387587 24387626 -99688546 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 771 497 320 58 39 chr9 24387626 24387766 -99688406 - RSINE1 SINE B4 -19 146 2 4 771 21 82 0 0 chr9 24388325 24388374 -99687798 + AT_rich Low_complexity Low_complexity 1 49 0 4 771 297 0 0 0 chr9 24388759 24388792 -99687380 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 771 246 294 37 0 chr9 24388801 24388910 -99687262 + (CATATA)n Simple_repeat Simple_repeat 6 118 0 4 771 5352 84 21 1 chr9 24392695 24393559 -99682613 + MusHAL1 LINE L1 623 1502 -1851 4 771 3602 82 68 4 chr9 24393558 24393817 -99682355 + MusHAL1 LINE L1 2027 2303 -1050 4 771 653 36 0 12 chr9 24393817 24393902 -99682270 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 4 771 1003 104 18 0 chr9 24393902 24394064 -99682108 + (GGAA)n Simple_repeat Simple_repeat 4 169 0 4 771 3602 82 68 4 chr9 24394064 24394364 -99681808 + MusHAL1 LINE L1 2304 2622 -731 4 771 892 81 7 32 chr9 24395075 24395229 -99680943 + MusHAL1 LINE L1 2620 2769 -584 4 771 3056 117 61 18 chr9 24395229 24395735 -99680437 + Lx LINE L1 6127 6654 0 4 771 3273 179 48 17 chr9 24395735 24396269 -99679903 + L1_Mur3 LINE L1 1515 2057 -3823 4 771 447 123 0 0 chr9 24396269 24396350 -99679822 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 771 3273 179 48 17 chr9 24396350 24396592 -99679580 + L1_Mur3 LINE L1 2058 2315 -3565 4 771 1913 257 81 45 chr9 24396642 24397282 -99678890 - Lx6 LINE L1 -51 7409 6747 4 771 345 115 239 54 chr9 24397293 24397385 -99678787 - L1_Mm LINE L1 -1068 4815 4707 4 771 2265 138 10 5 chr9 24397385 24397779 -99678393 + L1_Mm LINE L1 4788 5183 -700 4 771 1718 194 10 8 chr9 24397779 24398168 -99678004 - L1_Mur3 LINE L1 -3177 2703 2314 4 771 575 341 14 6 chr9 24398178 24398498 -99677674 + Lx6 LINE L1 6169 6707 -753 4 771 5032 72 5 3 chr9 24398504 24399162 -99677010 + L1_Mus3 LINE L1 5980 6638 0 5 771 2306 166 44 93 chr9 24399165 24399364 -99676808 + Lx6 LINE L1 2696 2876 -3004 5 771 1177 90 6 6 chr9 24399364 24399542 -99676630 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 771 2306 166 44 93 chr9 24399542 24400006 -99676166 + Lx6 LINE L1 2877 3326 -2554 5 771 326 227 0 11 chr9 24400028 24400117 -99676055 + Lx6 LINE L1 5210 5297 -583 5 771 5865 237 100 19 chr9 24400117 24400950 -99675222 + Lx6 LINE L1 5621 6471 -989 5 771 612 0 0 0 chr9 24400950 24401018 -99675154 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 771 324 0 0 0 chr9 24401018 24401053 -99675119 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 771 5865 237 100 19 chr9 24401053 24401921 -99674251 + Lx6 LINE L1 6472 7458 -2 5 771 1131 258 82 12 chr9 24401924 24402352 -99673820 + L1M3 LINE L1 3840 4297 -1843 5 771 11293 164 32 13 chr9 24402798 24405424 -99670748 + L1_Mur2 LINE L1 1010 3685 -2201 5 771 3980 179 11 19 chr9 24405399 24406253 -99669919 - L1_Mur3 LINE L1 -463 5417 4571 5 771 31863 72 2 4 chr9 24406254 24411724 -99664448 + L1Md_F LINE L1 128 5585 -298 5 771 1997 52 0 8 chr9 24411725 24411979 -99664193 + L1Md_F2 LINE L1 6319 6570 -12 5 771 4096 195 77 5 chr9 24411979 24412175 -99663997 - L1_Mur3 LINE L1 -1296 4584 4342 5 771 389 68 26 26 chr9 24412175 24412251 -99663921 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 771 4096 195 77 5 chr9 24412251 24412291 -99663881 - L1_Mur3 LINE L1 -1539 4341 4285 5 771 480 18 0 0 chr9 24412291 24412348 -99663824 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 771 4096 195 77 5 chr9 24412348 24413109 -99663063 - L1_Mur3 LINE L1 -1596 4284 3517 5 771 3087 108 8 2 chr9 24413113 24413585 -99662587 + L1_Mus3 LINE L1 6132 6606 -32 5 771 493 15 15 15 chr9 24413585 24413652 -99662520 + (TAAAA)n Simple_repeat Simple_repeat 3 69 0 5 771 339 149 0 124 chr9 24413652 24413748 -99662424 - L1_Mur3 LINE L1 -2357 3523 3439 5 771 458 206 21 0 chr9 24413980 24414077 -99662095 + B3A SINE B2 1 99 -99 5 771 955 189 41 4 chr9 24414118 24414194 -99661978 - L1_Mur3 LINE L1 -2423 3457 3376 5 771 333 0 0 0 chr9 24414194 24414231 -99661941 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 771 955 189 41 4 chr9 24414231 24414398 -99661774 - L1_Mur3 LINE L1 -2505 3375 3206 5 771 3886 208 77 23 chr9 24414391 24415366 -99660806 + Lx7 LINE L1 6636 7663 -33 5 771 2362 153 2 22 chr9 24415368 24415768 -99660404 - ORR1B1 LTR MaLR -2 392 1 5 771 2445 154 118 4 chr9 24415768 24416225 -99659947 - ORR1B1-int LTR MaLR 0 1509 1001 5 771 2260 117 9 6 chr9 24416256 24416582 -99659590 - ORR1B1 LTR MaLR 0 327 1 5 771 9090 169 32 21 chr9 24416583 24418347 -99657825 - ORR1B1-int LTR MaLR -9 1783 1 5 771 2295 105 9 0 chr9 24418347 24418671 -99657501 - ORR1B1 LTR MaLR 0 327 1 5 771 3204 176 96 213 chr9 24418671 24420006 -99656166 - ORR1B1-int LTR MaLR -561 1402 225 5 771 516 299 22 28 chr9 24420009 24420191 -99655981 + MTE2b-int LTR MaLR 1400 1580 0 5 771 1047 282 67 26 chr9 24420191 24420537 -99655635 + MTE2b LTR MaLR 1 360 -19 5 771 47 33 0 0 chr9 24421464 24421525 -99654647 + AT_rich Low_complexity Low_complexity 1 61 0 5 771 29 70 0 0 chr9 24421641 24421698 -99654474 + AT_rich Low_complexity Low_complexity 1 57 0 5 771 319 274 78 0 chr9 24422055 24422157 -99654015 - PB1D7 SINE Alu 0 120 11 5 771 217 296 80 0 chr9 24422084 24422172 -99654000 - ID_B1 SINE B4 -57 167 73 5 771 26 0 0 0 chr9 24422175 24422201 -99653971 + AT_rich Low_complexity Low_complexity 1 26 0 5 771 411 56 0 0 chr9 24422299 24422353 -99653819 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 771 1811 200 35 24 chr9 24423955 24424275 -99651897 + ORR1C1 LTR MaLR 1 323 -55 5 771 4941 73 9 0 chr9 24424275 24424921 -99651251 - L1_Mus3 LINE L1 -6 6632 5981 5 771 1811 200 35 24 chr9 24424921 24424974 -99651198 + ORR1C1 LTR MaLR 324 378 0 5 771 702 230 85 32 chr9 24425163 24425504 -99650668 + Lx6 LINE L1 868 1212 -5445 5 771 3171 227 106 17 chr9 24425506 24426805 -99649367 + Lx6 LINE L1 4932 6364 -686 5 771 1215 312 67 15 chr9 24426801 24427382 -99648790 + Lx6 LINE L1 6479 7458 -2 5 771 4821 89 46 24 chr9 24427523 24428345 -99647827 + Lx3B LINE L1 4539 5378 -508 5 771 3694 75 12 0 chr9 24428346 24428827 -99647345 + L1_Mus1 LINE L1 6080 6566 -1 5 771 8283 126 19 3 chr9 24430239 24431590 -99644582 + Lx3B LINE L1 5537 6919 -54 5 771 27 73 0 0 chr9 24432063 24432118 -99644054 + AT_rich Low_complexity Low_complexity 1 55 0 5 771 887 78 0 21 chr9 24432118 24432262 -99643910 - L1Md_F2 LINE L1 -5 6577 6437 5 771 1173 322 15 0 chr9 24432897 24433223 -99642949 + MTD LTR MaLR 1 331 -88 5 771 828 340 107 41 chr9 24433257 24433891 -99642281 + Lx8 LINE L1 6606 7281 -192 5 771 240 35 0 0 chr9 24434055 24434084 -99642088 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 771 549 139 16 8 chr9 24435215 24435338 -99640834 - L1_Mus3 LINE L1 0 6638 6515 5 771 526 82 0 0 chr9 24435338 24435411 -99640761 - L1_Mus3 LINE L1 -218 6420 6348 5 771 534 297 136 40 chr9 24436065 24436462 -99639710 + Lx8 LINE L1 6979 7413 -60 5 771 12156 153 183 69 chr9 24436520 24439901 -99636271 + L1_Mus3 LINE L1 437 4725 -1152 5 771 240 35 0 0 chr9 24439901 24439930 -99636242 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 771 12156 171 240 76 chr9 24439930 24440510 -99635662 + L1_Mus3 LINE L1 4726 5101 -776 5 771 2730 25 0 0 chr9 24440510 24440826 -99635346 + L1_Mus1 LINE L1 6251 6566 -1 5 771 12156 122 88 27 chr9 24440826 24442410 -99633762 + L1_Mus3 LINE L1 5102 6636 -2 5 771 1484 253 77 21 chr9 24442476 24443098 -99633074 - Lx7 LINE L1 -1775 5921 5236 5 771 536 311 30 0 chr9 24443184 24443351 -99632821 + Lx9 LINE L1 6581 6752 -892 5 771 857 256 27 0 chr9 24443582 24443840 -99632332 + Lx7 LINE L1 4847 5111 -769 5 771 1466 249 68 35 chr9 24443860 24444693 -99631479 + Lx7 LINE L1 5314 6166 -1307 5 771 252 214 0 0 chr9 24444694 24444750 -99631422 + (CATG)n Simple_repeat Simple_repeat 1 56 0 5 771 480 161 45 0 chr9 24444767 24444879 -99631293 + CT-rich Low_complexity Low_complexity 3 119 0 5 771 1465 242 43 6 chr9 24445052 24445401 -99630771 + ORR1D2 LTR MaLR 1 362 -8 5 771 286 318 35 35 chr9 24445425 24445653 -99630519 - L1MDb LINE L1 -4734 1899 1672 5 771 300 290 7 44 chr9 24445934 24446071 -99630101 - L1MDb LINE L1 -5337 1296 1165 5 771 642 253 62 15 chr9 24446169 24446442 -99629730 - L1MA4 LINE L1 -382 5918 5633 5 771 283 250 62 0 chr9 24446646 24446758 -99629414 + L1MA5 LINE L1 6182 6300 0 5 771 456 366 67 25 chr9 24446769 24447052 -99629120 - L1MDb LINE L1 -5358 1182 888 5 771 258 329 37 0 chr9 24447261 24447343 -99628829 + MLT1A1 LTR MaLR 63 147 -261 5 771 216 0 0 0 chr9 24449140 24449164 -99627008 + (TTC)n Simple_repeat Simple_repeat 1 24 0 5 771 252 0 0 0 chr9 24449164 24449192 -99626980 + (TTA)n Simple_repeat Simple_repeat 3 30 0 5 771 1588 100 0 32 chr9 24449192 24449440 -99626732 - L1Md_F2 LINE L1 -24 6558 6319 5 771 336 48 0 0 chr9 24449685 24449727 -99626445 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 771 943 214 39 5 chr9 24450345 24450552 -99625620 + B3 SINE B2 2 215 -1 5 771 226 349 123 25 chr9 24451215 24451418 -99624754 + L1MEg LINE L1 304 526 -5558 5 771 10752 193 37 44 chr9 24451846 24453082 -99623090 + L1_Mur3 LINE L1 880 2066 -3814 5 771 648 86 0 0 chr9 24453082 24453187 -99622985 + (TC)n Simple_repeat Simple_repeat 1 105 0 5 771 243 0 0 0 chr9 24453187 24453213 -99622959 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 771 10752 187 51 18 chr9 24453213 24455029 -99621143 + L1_Mur3 LINE L1 2067 3969 -1911 5 771 1689 189 64 0 chr9 24455047 24455438 -99620734 + L1_Mur3 LINE L1 4394 4809 -1071 5 771 1816 57 0 0 chr9 24455440 24455670 -99620502 + ORR1A1 LTR MaLR 1 230 -116 5 771 806 107 0 0 chr9 24455670 24455791 -99620381 - L1_Mm LINE L1 -866 5017 4897 5 771 4369 63 5 5 chr9 24455790 24456978 -99619194 + L1Md_F2 LINE L1 5296 6568 -14 5 771 4932 43 2 0 chr9 24457160 24457747 -99618425 - L1Md_F2 LINE L1 -2 6580 5993 5 771 262 143 20 90 chr9 24457752 24457852 -99618320 - Lx9 LINE L1 0 7644 7552 5 771 12863 41 6 4 chr9 24457850 24460223 -99615949 - L1Md_F3 LINE L1 0 6584 4208 5 771 905 252 43 64 chr9 24460326 24460699 -99615473 + Lx9 LINE L1 6880 7244 -400 5 771 1792 166 3 25 chr9 24461657 24461984 -99614188 + Lx4A LINE L1 6739 7058 0 5 771 22 0 0 0 chr9 24461984 24462006 -99614166 + AT_rich Low_complexity Low_complexity 1 22 0 5 771 760 242 12 24 chr9 24462158 24462327 -99613845 + B3 SINE B2 1 167 -49 5 771 478 287 9 0 chr9 24462807 24462915 -99613257 + ID_B1 SINE B4 82 190 -34 5 771 433 272 8 66 chr9 24462915 24462929 -99613243 + PB1D10 SINE Alu 1 115 -2 5 771 26 64 0 0 chr9 24463225 24463272 -99612900 + AT_rich Low_complexity Low_complexity 1 47 0 5 771 186 224 0 0 chr9 24464101 24464150 -99612022 + GA-rich Low_complexity Low_complexity 1 49 0 5 771 289 0 49 0 chr9 24464518 24464559 -99611613 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 771 825 250 5 43 chr9 24464762 24464946 -99611226 + B3 SINE B2 40 216 0 5 771 36 62 0 0 chr9 24465866 24465930 -99610242 + AT_rich Low_complexity Low_complexity 1 64 0 5 771 612 259 14 25 chr9 24466692 24466851 -99609321 + B3A SINE B2 49 203 -13 5 771 386 255 0 78 chr9 24467014 24467116 -99609056 + PB1D10 SINE Alu 24 117 0 5 771 282 179 0 0 chr9 24468468 24468524 -99607648 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 771 826 228 43 29 chr9 24468770 24468978 -99607194 - B3 SINE B2 0 216 6 5 771 388 302 25 0 chr9 24469083 24469242 -99606930 - L1MA5A LINE L1 -366 5931 5769 5 771 687 260 58 0 chr9 24469403 24469576 -99606596 - B3 SINE B2 -33 183 1 5 771 590 271 26 4 chr9 24469817 24470043 -99606129 - L1MA4 LINE L1 -396 5904 5674 5 771 258 265 0 10 chr9 24470066 24470165 -99606007 - L1MA4 LINE L1 -919 5224 5127 5 771 346 271 24 0 chr9 24470178 24470263 -99605909 - 5S rRNA rRNA -31 90 4 5 771 486 273 196 27 chr9 24470444 24470633 -99605539 + B4A SINE B4 48 268 -24 5 771 235 313 28 50 chr9 24473303 24473444 -99602728 + Kanga2_a DNA Tc2 583 720 -168 5 771 25 0 0 0 chr9 24474302 24474327 -99601845 + AT_rich Low_complexity Low_complexity 1 25 0 5 771 732 311 7 2 chr9 24474755 24474966 -99601206 + B3A SINE B2 1 211 -5 5 771 467 234 39 7 chr9 24475565 24475720 -99600452 + L1_Mur3 LINE L1 4267 4426 -1454 5 771 7026 158 24 14 chr9 24475720 24477273 -99598899 + Lx3C LINE L1 5414 6996 -4 5 771 1175 231 70 36 chr9 24477276 24477717 -99598455 + L1_Rod LINE L1 2759 3214 -2633 5 771 639 266 14 0 chr9 24477720 24477863 -99598309 + B1_Mur4 SINE Alu 6 150 0 5 771 443 199 0 40 chr9 24477869 24478021 -99598151 + GA-rich Low_complexity Low_complexity 3 148 0 5 771 1233 249 68 71 chr9 24478038 24478462 -99597710 + RLTR23 LTR ERV1 8 430 0 5 771 290 206 0 14 chr9 24478464 24478538 -99597634 + GA-rich Low_complexity Low_complexity 3 75 0 5 771 370 150 0 0 chr9 24478538 24478598 -99597574 + L1_Mur1 LINE L1 208 267 -6717 5 771 23650 139 32 19 chr9 24478601 24483674 -99592498 + L1_Mur1 LINE L1 371 5509 -377 5 771 1460 92 55 46 chr9 24483674 24483912 -99592260 + L1_Mus2 LINE L1 6327 6566 0 5 771 1488 239 110 17 chr9 24483913 24484385 -99591787 + Lx9 LINE L1 6192 6707 -937 5 771 565 227 0 8 chr9 24484387 24484516 -99591656 + Lx7 LINE L1 7224 7351 -345 5 771 330 200 12 0 chr9 24484591 24484671 -99591501 + Lx7 LINE L1 7616 7696 0 5 771 513 217 86 57 chr9 24485954 24486164 -99590008 - Lx6 LINE L1 0 7460 7245 5 771 6146 88 1 14 chr9 24486796 24487658 -99588514 - L1_Mus3 LINE L1 0 6638 5788 6 771 270 0 0 0 chr9 24487660 24487690 -99588482 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 771 216 86 0 0 chr9 24487734 24487769 -99588403 + (T)n Simple_repeat Simple_repeat 1 35 0 6 771 1154 48 0 20 chr9 24487769 24487917 -99588255 - B1_Mm SINE Alu 0 147 3 6 771 14981 120 11 4 chr9 24487918 24488982 -99587190 - L1_Mm LINE L1 -81 5802 4738 6 771 180 0 0 0 chr9 24488982 24489002 -99587170 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 771 14981 120 11 4 chr9 24489002 24490375 -99585797 - L1_Mm LINE L1 -1146 4737 3349 6 771 11123 61 19 3 chr9 24490375 24491896 -99584276 + ORR1A1-int LTR MaLR 247 1792 0 6 771 2496 41 63 0 chr9 24491896 24492214 -99583958 + ORR1A1 LTR MaLR 1 338 -8 6 771 11131 110 5 6 chr9 24492218 24494406 -99581766 - L1VL4 LINE L1 -983 2576 392 6 771 1035 161 37 16 chr9 24494809 24494998 -99581174 - B2_Mm2 SINE B2 -2 193 1 6 771 402 250 45 0 chr9 24495732 24495820 -99580352 - PB1D7 SINE Alu -5 115 24 6 771 366 260 70 40 chr9 24496084 24496184 -99579988 + B3 SINE B2 106 208 -8 6 771 25 0 0 0 chr9 24496727 24496752 -99579420 + AT_rich Low_complexity Low_complexity 1 25 0 6 771 264 310 51 45 chr9 24497072 24497248 -99578924 - L1M4 LINE L1 -6282 260 84 6 771 638 317 64 25 chr9 24497862 24498098 -99578074 + B4A SINE B4 7 251 -41 6 771 333 0 0 0 chr9 24498740 24498777 -99577395 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 771 705 173 228 13 chr9 24498840 24499068 -99577104 + Lx9 LINE L1 7355 7631 -13 6 771 315 0 0 0 chr9 24500003 24500038 -99576134 + (A)n Simple_repeat Simple_repeat 1 35 0 1 771 304 227 140 21 chr9 24501632 24501733 -99574439 - PB1D7 SINE Alu -10 110 2 2 771 5555 128 34 91 chr9 24501840 24502925 -99573247 + RLTR13D5 LTR ERVK 1 1023 0 3 771 1347 203 18 98 chr9 24503327 24503665 -99572507 - ORR1D1-int LTR MaLR -1039 331 21 4 771 502 203 11 18 chr9 24503680 24503840 -99572332 - ORR1D1 LTR MaLR -97 277 8 4 771 374 91 159 0 chr9 24503949 24504037 -99572135 - Lx9 LINE L1 -6 7638 7537 5 771 651 228 32 8 chr9 24504038 24504162 -99572010 + B3A SINE B2 2 128 -70 6 771 21 36 0 0 chr9 24504169 24504197 -99571975 + AT_rich Low_complexity Low_complexity 1 28 0 7 771 525 80 11 22 chr9 24504226 24504316 -99571856 + (TA)n Simple_repeat Simple_repeat 2 90 0 8 771 4377 203 174 48 chr9 24504319 24505821 -99570351 - Lx9 LINE L1 -179 7465 5631 9 771 28 0 0 0 chr9 24505896 24505924 -99570248 + AT_rich Low_complexity Low_complexity 1 28 0 1 771 243 378 0 0 chr9 24505973 24506055 -99570117 - B1F2 SINE Alu -65 84 3 1 771 25 0 0 0 chr9 24506071 24506096 -99570076 + AT_rich Low_complexity Low_complexity 1 25 0 1 771 7703 51 2 7 chr9 24506821 24507867 -99568305 - L1Md_F2 LINE L1 -1 6581 5536 1 771 13825 62 1 1 chr9 24507854 24509718 -99566454 + L1Md_F2 LINE L1 3670 5533 -350 1 771 1020 265 38 48 chr9 24509812 24509961 -99566211 + L1_Mur3 LINE L1 3329 3477 -2403 1 771 943 221 20 0 chr9 24509961 24510160 -99566012 + B3 SINE B2 1 203 -13 1 771 1020 265 38 48 chr9 24510160 24510430 -99565742 + L1_Mur3 LINE L1 3478 3744 -2136 1 96 892 232 62 0 chr9 24510443 24510620 -99565552 + B3 SINE B2 1 188 -28 1 772 180 77 0 0 chr9 24510633 24510659 -99565513 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1 772 627 250 6 0 chr9 24510661 24510817 -99565355 + L1_Mur3 LINE L1 3739 3895 -1985 1 772 2425 110 148 19 chr9 24510880 24511307 -99564865 - RLTR45 LTR ERVK 0 482 1 1 772 284 290 42 21 chr9 24511855 24511950 -99564222 - MTEa LTR MaLR -265 114 18 1 772 918 211 179 29 chr9 24512343 24512689 -99563483 + RLTR9E LTR ERVK 5 402 -7 2 772 7389 124 19 10 chr9 24512698 24513889 -99562283 + ETnERV2-int LTR ERVK 2 1203 -2111 2 772 3180 38 30 10 chr9 24513889 24514289 -99561883 + RLTR10C LTR ERVK 1 408 -28 2 772 3169 103 7 2 chr9 24514299 24514756 -99561416 + ETnERV2-int LTR ERVK 1198 1656 -1658 2 772 20936 176 24 20 chr9 24514982 24519598 -99556574 + ETnERV2-int LTR ERVK 1790 7207 -199 2 772 641 231 288 17 chr9 24519599 24519898 -99556274 + RLTR13D6 LTR ERVK 158 537 -365 2 772 410 97 26 77 chr9 24519899 24519977 -99556195 + ETnERV2-int LTR ERVK 7330 7403 -3 2 772 839 227 179 40 chr9 24519979 24520332 -99555840 + RLTR9E LTR ERVK 1 402 -7 2 772 1093 56 0 47 chr9 24520542 24520692 -99555480 + B1_Mm SINE Alu 5 147 0 2 772 454 288 280 12 chr9 24521262 24521664 -99554508 - L1MB8 LINE L1 -210 5968 5459 2 772 335 286 69 45 chr9 24521696 24521941 -99554231 - L1MC2 LINE L1 -12 6332 6082 2 772 324 333 8 61 chr9 24521973 24522104 -99554068 - L1MC2 LINE L1 -325 6008 5885 2 772 247 250 25 12 chr9 24522148 24522229 -99553943 + CT-rich Low_complexity Low_complexity 2 83 0 2 772 496 281 91 20 chr9 24522388 24522642 -99553530 - L1MC2 LINE L1 -571 5773 5502 2 772 237 275 0 14 chr9 24522646 24522716 -99553456 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 772 508 344 42 34 chr9 24522724 24522986 -99553186 - B4A SINE B4 -2 290 27 2 772 1602 231 87 10 chr9 24523126 24523515 -99552657 + MTD LTR MaLR 1 419 0 2 772 372 312 65 30 chr9 24523663 24524000 -99552172 - L1MC2 LINE L1 -1257 4889 4541 2 772 336 230 11 22 chr9 24524015 24524104 -99552068 + L1MC3 LINE L1 6692 6779 -1006 3 772 247 288 67 9 chr9 24524576 24524681 -99551491 + L1MC4 LINE L1 7924 8034 -8 3 772 539 29 14 0 chr9 24525692 24525761 -99550411 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 772 219 114 0 0 chr9 24525812 24525847 -99550325 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 772 1097 55 7 20 chr9 24528210 24528359 -99547813 + B1_Mus1 SINE Alu 2 148 0 3 772 1010 130 0 7 chr9 24530336 24530483 -99545689 - B1_Mur2 SINE Alu -3 146 1 3 772 1142 175 10 10 chr9 24530573 24530769 -99545403 + B3 SINE B2 1 196 -20 3 772 223 177 32 16 chr9 24530770 24530833 -99545339 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 772 213 39 0 0 chr9 24531350 24531376 -99544796 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 772 288 0 0 0 chr9 24531376 24531407 -99544765 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 772 547 274 30 54 chr9 24531592 24531758 -99544414 - B4 SINE B4 -51 241 80 4 772 1204 150 0 0 chr9 24532855 24533055 -99543117 - L1_Mm LINE L1 -134 5749 5550 4 772 3663 104 30 2 chr9 24533055 24533583 -99542589 + Lx2 LINE L1 6455 6997 0 4 772 657 96 0 0 chr9 24533584 24533678 -99542494 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 4 772 1187 94 0 6 chr9 24533678 24533859 -99542313 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 772 1125 62 28 7 chr9 24534009 24534154 -99542018 - B1_Mus1 SINE Alu 0 148 1 4 772 419 200 180 21 chr9 24534503 24534692 -99541480 - L1MD LINE L1 -1433 4713 4495 4 772 354 374 45 15 chr9 24534764 24535033 -99541139 - L1MEc LINE L1 -1773 4546 4270 4 772 263 308 96 15 chr9 24535261 24535459 -99540713 - L1MEc LINE L1 -2295 4024 3811 4 772 1288 243 83 20 chr9 24535470 24535818 -99540354 - MTE2b LTR MaLR -2 377 8 4 772 238 271 34 0 chr9 24536135 24536194 -99539978 - MTD LTR MaLR -16 403 343 4 772 242 218 164 0 chr9 24536179 24536234 -99539938 - MTE2a LTR MaLR -259 120 57 5 772 232 226 0 0 chr9 24536339 24536392 -99539780 - L1MEc LINE L1 -2884 3435 3383 4 772 447 328 122 17 chr9 24536480 24537023 -99539149 - L1MEc LINE L1 -3049 3270 2671 4 772 342 307 26 0 chr9 24537159 24537273 -99538899 - PB1D10 SINE Alu 0 117 1 5 772 288 91 0 0 chr9 24537496 24537540 -99538632 + (GGTTG)n Simple_repeat Simple_repeat 2 45 0 5 772 852 104 0 0 chr9 24537543 24537668 -99538504 + (TTTC)n Simple_repeat Simple_repeat 1 125 0 5 772 233 271 14 0 chr9 24537801 24537871 -99538301 - L1MEc LINE L1 -4287 2113 2043 4 772 436 326 77 74 chr9 24537886 24538053 -99538119 - L1MEc LINE L1 -4347 2053 1893 4 772 853 178 200 0 chr9 24538053 24538233 -99537939 - B3 SINE B2 0 216 1 5 772 436 326 77 74 chr9 24538233 24538483 -99537689 - L1MEc LINE L1 -4508 1892 1635 4 772 444 280 163 14 chr9 24538500 24539010 -99537162 - L1MEc LINE L1 -4859 1541 956 4 772 339 319 176 43 chr9 24539407 24539619 -99536553 - L1MEc LINE L1 -5907 493 248 4 772 1078 168 72 0 chr9 24539619 24539827 -99536345 + URR1B DNA MER1_type 1 223 -2 5 772 339 319 176 43 chr9 24539827 24539961 -99536211 - L1MEc LINE L1 -6153 247 103 4 772 30 27 0 0 chr9 24540189 24540226 -99535946 + AT_rich Low_complexity Low_complexity 1 37 0 5 772 472 262 53 18 chr9 24540657 24540882 -99535290 + L1MA5 LINE L1 5762 5994 -306 5 772 233 240 20 0 chr9 24540920 24540970 -99535202 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 772 744 106 14 34 chr9 24541181 24541327 -99534845 + L1_Mus3 LINE L1 6496 6638 0 5 772 249 325 17 50 chr9 24542709 24542829 -99533343 - MER5A DNA MER1_type -3 186 71 6 772 337 297 20 108 chr9 24544808 24544984 -99531188 - MLT1A1 LTR MaLR -10 398 201 6 772 262 286 121 10 chr9 24545583 24545682 -99530490 + PB1D10 SINE Alu 1 110 -7 6 772 255 297 63 63 chr9 24546009 24546135 -99530037 + MTE2a LTR MaLR 240 365 -14 6 772 321 26 0 0 chr9 24546167 24546205 -99529967 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 772 660 258 16 53 chr9 24547018 24547206 -99528966 + B3A SINE B2 2 182 -16 6 772 327 25 0 0 chr9 24547360 24547400 -99528772 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 772 542 329 188 28 chr9 24548555 24549453 -99526719 - L2 LINE L2 -611 2808 1767 6 772 2698 161 18 56 chr9 24549701 24550216 -99525956 + RLTR16 LTR ERVK 11 505 0 6 772 557 200 164 16 chr9 24550733 24550855 -99525317 + B1_Mur3 SINE Alu 1 140 -9 6 772 1075 247 110 19 chr9 24551015 24551333 -99524839 + MTE2b LTR MaLR 1 347 -32 7 772 482 292 50 9 chr9 24551589 24551810 -99524362 + L1MB4 LINE L1 5915 6144 -36 7 772 919 160 7 0 chr9 24557912 24558056 -99518116 - B1_Mur2 SINE Alu -4 145 1 7 772 401 358 19 37 chr9 24558414 24558629 -99517543 - B3 SINE B2 0 216 6 7 772 927 164 55 22 chr9 24558645 24558826 -99517346 - B2_Mm2 SINE B2 -8 187 1 7 772 261 0 0 0 chr9 24559456 24559485 -99516687 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 772 342 45 0 0 chr9 24559485 24559528 -99516644 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 772 410 309 34 24 chr9 24560256 24560426 -99515746 + MIRb SINE MIR 43 216 -52 7 772 22 0 0 0 chr9 24561890 24561912 -99514260 + AT_rich Low_complexity Low_complexity 1 22 0 7 772 261 0 0 0 chr9 24561912 24561941 -99514231 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 772 193 344 82 22 chr9 24562065 24562199 -99513973 - MIRc SINE MIR -37 231 90 8 772 234 0 0 0 chr9 24563570 24563596 -99512576 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 772 643 276 175 36 chr9 24563618 24563870 -99512302 - B4A SINE B4 -4 288 2 8 772 691 264 0 0 chr9 24563902 24564046 -99512126 + RSINE1 SINE B4 3 146 -19 8 772 426 53 0 0 chr9 24564052 24564109 -99512063 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 772 342 0 0 0 chr9 24564120 24564158 -99512014 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 8 772 746 251 19 42 chr9 24564184 24564396 -99511776 + B3 SINE B2 3 209 -7 8 772 23 0 0 0 chr9 24564482 24564505 -99511667 + AT_rich Low_complexity Low_complexity 1 23 0 8 772 1078 46 0 0 chr9 24564506 24564637 -99511535 + B1_Mus2 SINE Alu 2 132 -15 8 772 243 0 0 0 chr9 24564641 24564668 -99511504 + (TAA)n Simple_repeat Simple_repeat 2 28 0 8 772 1390 70 21 0 chr9 24564795 24564981 -99511191 - B2_Mm1t SINE B2 -3 190 1 9 772 498 244 95 42 chr9 24565063 24565233 -99510939 - B3A SINE B2 -9 189 12 9 772 474 284 0 0 chr9 24565522 24565631 -99510541 - PB1D7 SINE Alu -5 115 7 9 772 736 201 0 40 chr9 24566012 24566162 -99510010 + B1_Mur3 SINE Alu 3 146 -3 9 772 1141 88 0 0 chr9 24566185 24566333 -99509839 + B1_Mus1 SINE Alu 1 148 0 9 772 1149 123 0 0 chr9 24566337 24566516 -99509656 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 9 772 505 311 106 0 chr9 24566530 24566765 -99509407 + MER2 DNA MER2_type 86 345 0 9 772 23 33 0 0 chr9 24568245 24568275 -99507897 + AT_rich Low_complexity Low_complexity 1 30 0 9 772 601 268 23 35 chr9 24568454 24568628 -99507544 + B4A SINE B4 1 172 -120 9 772 251 270 8 112 chr9 24568745 24568870 -99507302 + B4A SINE B4 181 292 0 9 772 236 185 284 0 chr9 24569053 24569134 -99507038 - PB1D10 SINE Alu -1 116 13 9 772 279 0 0 0 chr9 24569892 24569923 -99506249 + (A)n Simple_repeat Simple_repeat 1 31 0 1 772 449 248 0 58 chr9 24570266 24570374 -99505798 + PB1D10 SINE Alu 3 108 -9 1 772 450 0 0 0 chr9 24570374 24570424 -99505748 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 772 449 248 0 58 chr9 24570424 24570435 -99505737 + PB1D10 SINE Alu 109 115 -2 1 772 215 255 0 0 chr9 24571331 24571382 -99504790 + T-rich Low_complexity Low_complexity 1 51 0 1 772 225 200 12 62 chr9 24572575 24572655 -99503517 + GA-rich Low_complexity Low_complexity 4 79 0 1 772 263 239 0 40 chr9 24572786 24572860 -99503312 + PB1D10 SINE Alu 46 116 -1 1 772 231 146 0 0 chr9 24574784 24574825 -99501347 + (TCC)n Simple_repeat Simple_repeat 3 43 0 1 772 202 121 0 29 chr9 24576800 24576834 -99499338 + T-rich Low_complexity Low_complexity 3 35 0 1 772 198 0 0 0 chr9 24577625 24577647 -99498525 + (A)n Simple_repeat Simple_repeat 1 22 0 1 772 597 234 14 21 chr9 24580227 24580367 -99495805 - B3A SINE B2 -53 145 7 1 772 318 271 84 63 chr9 24581280 24581480 -99494692 + MIRc SINE MIR 16 219 -49 1 772 728 161 8 8 chr9 24583926 24584057 -99492115 + B1_Mur1 SINE Alu 1 131 -18 1 772 239 125 31 125 chr9 24584046 24584110 -99492062 + B1_Mus2 SINE Alu 90 147 0 1 772 274 305 10 34 chr9 24584111 24584232 -99491940 + GA-rich Low_complexity Low_complexity 1 118 0 1 772 198 0 0 0 chr9 24585270 24585292 -99490880 + (G)n Simple_repeat Simple_repeat 1 22 0 1 772 224 246 18 0 chr9 24586010 24586067 -99490105 + MIRm SINE MIR 101 158 -118 1 772 282 319 40 34 chr9 24586364 24586513 -99489659 + MIR SINE MIR 43 192 -70 1 772 21 0 0 0 chr9 24587645 24587666 -99488506 + AT_rich Low_complexity Low_complexity 1 21 0 1 772 1579 52 5 0 chr9 24587797 24587989 -99488183 - B2_Mm1a SINE B2 0 193 1 1 772 24 67 0 0 chr9 24588794 24588839 -99487333 + AT_rich Low_complexity Low_complexity 1 45 0 1 772 400 193 66 6 chr9 24588846 24589049 -99487123 + (TA)n Simple_repeat Simple_repeat 1 215 0 1 772 265 187 58 39 chr9 24588965 24589121 -99487051 + (TTATA)n Simple_repeat Simple_repeat 5 163 0 1 772 1380 129 124 0 chr9 24589187 24589428 -99486744 + ORR1A4 LTR MaLR 59 329 0 1 772 247 123 36 24 chr9 24589441 24589524 -99486648 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 772 199 219 21 0 chr9 24589612 24589708 -99486464 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 772 314 204 0 9 chr9 24589794 24589903 -99486269 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 772 1010 240 38 55 chr9 24590952 24591243 -99484929 + B4A SINE B4 1 286 -6 1 772 426 20 0 0 chr9 24591305 24591356 -99484816 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 1 772 1209 22 0 0 chr9 24591356 24591494 -99484678 - B1_Mm SINE Alu -8 139 2 1 772 622 176 291 0 chr9 24591566 24591731 -99484441 - B3 SINE B2 -3 213 1 1 772 306 0 0 0 chr9 24592703 24592737 -99483435 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 772 432 0 0 0 chr9 24592737 24592784 -99483388 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 772 254 364 69 28 chr9 24594410 24594554 -99481618 + MLT1H LTR MaLR 44 193 -356 1 772 898 353 68 41 chr9 24594846 24595289 -99480883 - LTR16B LTR ERVL 0 463 9 1 772 220 218 175 19 chr9 24595873 24595976 -99480196 - MIR SINE MIR -6 256 138 1 772 536 210 198 0 chr9 24596168 24596330 -99479842 - URR1A DNA MER1_type 0 226 33 1 772 664 278 69 20 chr9 24596397 24596643 -99479529 + MLT1B LTR MaLR 68 325 -65 1 772 241 311 97 31 chr9 24597342 24597601 -99478571 - L1M4 LINE L1 -2026 4120 3845 1 772 3528 58 0 0 chr9 24597785 24598293 -99477879 + L1_Mus1 LINE L1 6138 6567 0 1 772 575 230 95 0 chr9 24598461 24598587 -99477585 + B3 SINE B2 58 195 -21 1 772 2525 43 57 69 chr9 24598594 24598944 -99477228 - ORR1A1 LTR MaLR 0 346 1 1 772 25 0 0 0 chr9 24598949 24598974 -99477198 + AT_rich Low_complexity Low_complexity 1 25 0 1 772 600 73 0 0 chr9 24599264 24599346 -99476826 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 772 250 263 18 0 chr9 24600235 24600292 -99475880 - MER47A DNA MER2_type 0 366 309 1 772 470 335 46 6 chr9 24600405 24600579 -99475593 - Tigger5 DNA MER2_type -2212 194 14 1 772 681 285 6 17 chr9 24602125 24602300 -99473872 + B3A SINE B2 15 187 -11 1 772 246 62 0 0 chr9 24602300 24602332 -99473840 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 772 228 35 0 0 chr9 24602450 24602479 -99473693 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 772 198 0 0 0 chr9 24602758 24602780 -99473392 + (T)n Simple_repeat Simple_repeat 1 22 0 1 772 369 0 0 0 chr9 24602806 24602847 -99473325 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 772 486 0 0 0 chr9 24602847 24602900 -99473272 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 772 442 258 39 31 chr9 24602921 24603049 -99473123 - RSINE1 SINE B4 -34 131 3 1 772 233 200 208 10 chr9 24603072 24603168 -99473004 - L1M5 LINE L1 -3222 2924 2810 1 772 975 267 224 6 chr9 24604721 24605064 -99471108 - MTD LTR MaLR -1 418 1 1 772 897 274 33 103 chr9 24605405 24605772 -99470400 + RMER1B Other Other 2 342 -724 1 772 1157 207 258 0 chr9 24605817 24606202 -99469970 + RMER1B Other Other 580 1063 -3 1 772 330 0 0 0 chr9 24606275 24606314 -99469858 + HAL1-3A_ME LINE L1 1973 2011 -847 1 772 294 95 0 0 chr9 24606314 24606356 -99469816 + (CACG)n Simple_repeat Simple_repeat 4 45 0 1 772 1753 203 53 15 chr9 24608016 24608411 -99467761 - MTD LTR MaLR -9 410 1 1 772 312 231 177 31 chr9 24608636 24608828 -99467344 - L1MD LINE L1 -1369 4777 4558 1 772 430 297 57 60 chr9 24608858 24609123 -99467049 - L1MD LINE L1 -1681 4465 4202 1 772 236 348 0 0 chr9 24609825 24609917 -99466255 + (TGG)n Simple_repeat Simple_repeat 1 92 0 1 772 279 211 0 38 chr9 24610488 24610567 -99465605 - MER47A DNA MER2_type -71 295 220 1 772 343 217 0 0 chr9 24611106 24611175 -99464997 - MER47A DNA MER2_type -152 214 146 1 772 232 310 35 12 chr9 24611408 24611493 -99464679 - L1M4c LINE L1 -1954 4428 4342 1 772 290 285 83 31 chr9 24611918 24612110 -99464062 - L1M4c LINE L1 -2132 4250 4049 1 772 1161 98 0 0 chr9 24612185 24612349 -99463823 - B2_Mm2 SINE B2 -31 164 1 1 772 352 301 65 33 chr9 24612352 24612603 -99463569 - L1M4c LINE L1 -3988 2128 1942 1 772 1226 48 0 0 chr9 24612607 24612754 -99463418 - B1_Mm SINE Alu 0 147 1 1 772 1032 141 26 10 chr9 24613127 24613320 -99462852 + URR1B DNA MER1_type 30 225 0 1 772 870 251 29 15 chr9 24614102 24614308 -99461864 + B3 SINE B2 8 216 0 1 772 506 275 14 7 chr9 24617473 24617612 -99458560 - RSINE1 SINE B4 0 165 26 1 772 228 300 11 81 chr9 24618035 24618122 -99458050 - MTE2b LTR MaLR -298 81 1 1 772 561 166 0 0 chr9 24618323 24618468 -99457704 + (CA)n Simple_repeat Simple_repeat 2 146 0 1 772 270 0 0 0 chr9 24618522 24618552 -99457620 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 772 242 286 0 0 chr9 24618791 24618861 -99457311 - Arthur1B DNA Tip100 -1155 70 1 1 772 23 0 0 0 chr9 24619143 24619166 -99457006 + AT_rich Low_complexity Low_complexity 1 23 0 1 772 932 135 192 22 chr9 24619167 24619349 -99456823 - B3 SINE B2 -3 213 1 1 772 1123 62 7 0 chr9 24619508 24619654 -99456518 + B1_Mus2 SINE Alu 1 147 0 1 772 196 28 26 53 chr9 24619654 24619692 -99456480 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 1 772 515 296 121 21 chr9 24619792 24619982 -99456190 + ID_B1 SINE B4 15 223 -1 1 772 1142 49 0 7 chr9 24620166 24620309 -99455863 + B1_Mus1 SINE Alu 2 143 -5 1 772 24 32 0 0 chr9 24620851 24620882 -99455290 + AT_rich Low_complexity Low_complexity 1 31 0 1 772 185 137 39 0 chr9 24620912 24620963 -99455209 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 1 772 493 214 0 0 chr9 24620963 24621066 -99455106 - PB1D9 SINE Alu -1 119 17 1 772 3709 60 2 0 chr9 24621582 24622028 -99454144 + LTRIS5 LTR ERV1 1 447 0 1 772 563 301 72 5 chr9 24622229 24622436 -99453736 - ID_B1 SINE B4 -1 223 3 1 772 354 74 0 0 chr9 24622570 24622624 -99453548 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 772 326 319 31 31 chr9 24623407 24623598 -99452574 + Lx8 LINE L1 2155 2345 -4504 1 772 279 93 0 0 chr9 24623730 24623773 -99452399 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 772 376 340 0 0 chr9 24623781 24623881 -99452291 - RSINE1 SINE B4 -22 143 44 1 772 1083 52 0 7 chr9 24623940 24624075 -99452097 + B1_Mus2 SINE Alu 1 134 -13 1 772 180 0 0 0 chr9 24624075 24624095 -99452077 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 772 1899 52 51 31 chr9 24624141 24624398 -99451774 + L1Md_F2 LINE L1 6321 6582 0 1 772 481 273 23 8 chr9 24624807 24624940 -99451232 + B3A SINE B2 1 135 -63 1 772 993 90 0 0 chr9 24624960 24625115 -99451057 + (CA)n Simple_repeat Simple_repeat 2 156 0 1 772 2845 319 75 59 chr9 24625134 24625903 -99450269 + Lx8 LINE L1 2904 3688 -3157 1 772 2032 116 9 51 chr9 24625903 24626239 -99449933 - RLTRETN_Mm LTR ERVK 0 322 1 1 772 2845 319 75 59 chr9 24626239 24626580 -99449592 + Lx8 LINE L1 3689 4060 -2785 1 772 1619 47 0 0 chr9 24626580 24626772 -99449400 - B2_Mm1t SINE B2 0 193 2 1 772 2845 319 75 59 chr9 24626772 24626884 -99449288 + Lx8 LINE L1 4061 4165 -2680 1 772 2076 143 57 149 chr9 24626884 24627375 -99448797 - RLTR41 LTR ERV1 0 446 1 1 772 2845 319 75 59 chr9 24627375 24627407 -99448765 + Lx8 LINE L1 4166 4190 -2655 1 772 5072 25 10 2 chr9 24627407 24627996 -99448176 + L1Md_F2 LINE L1 5988 6581 -1 1 772 2845 319 75 59 chr9 24627996 24628182 -99447990 + Lx8 LINE L1 4191 4392 -2453 1 772 297 0 0 0 chr9 24628182 24628215 -99447957 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 772 2845 319 75 59 chr9 24628215 24629432 -99446740 + Lx8 LINE L1 4393 5610 -1235 1 772 3275 117 75 6 chr9 24629433 24630131 -99446041 - L1VL4 LINE L1 -13 3901 3123 1 772 23 0 0 0 chr9 24631829 24631852 -99444320 + AT_rich Low_complexity Low_complexity 1 23 0 1 772 24 32 0 0 chr9 24631931 24631962 -99444210 + AT_rich Low_complexity Low_complexity 1 31 0 1 772 4588 108 27 0 chr9 24632116 24632762 -99443410 - L1VL4 LINE L1 -5883 1203 472 1 772 256 146 24 0 chr9 24632756 24632797 -99443375 - L1VL4 LINE L1 -6068 234 193 1 772 562 287 43 29 chr9 24632901 24633109 -99443063 - B3 SINE B2 -1 215 5 1 772 341 296 8 8 chr9 24633117 24633243 -99442929 + Lx8 LINE L1 5782 5907 -938 1 772 419 311 141 19 chr9 24633291 24633654 -99442518 + Lx8 LINE L1 6209 6627 -1548 1 772 306 284 78 0 chr9 24634359 24634475 -99441697 + MT2A LTR ERVL 1 125 -408 1 772 1077 298 41 14 chr9 24634372 24634716 -99441456 + MTE2b LTR MaLR 19 371 -8 2 772 230 311 125 83 chr9 24634889 24635177 -99440995 + L1M5 LINE L1 3813 4112 -2034 2 772 579 259 73 61 chr9 24635471 24635718 -99440454 + L1M5 LINE L1 4490 4739 -1407 2 772 258 331 138 0 chr9 24635920 24636065 -99440107 + L1ME3A LINE L1 5910 6074 -99 2 772 338 211 66 0 chr9 24636269 24636345 -99439827 - B3A SINE B2 -35 163 83 2 772 201 280 24 21 chr9 24637641 24637734 -99438438 + L2c LINE L2 3028 3122 -265 2 772 24 0 0 0 chr9 24640963 24640987 -99435185 + AT_rich Low_complexity Low_complexity 1 24 0 2 772 949 80 0 189 chr9 24641034 24641219 -99434953 + B1_Mur4 SINE Alu 1 150 0 2 772 249 33 0 0 chr9 24641219 24641249 -99434923 + (A)n Simple_repeat Simple_repeat 1 30 0 2 773 250 309 32 24 chr9 24642789 24642984 -99433188 - L1M2 LINE L1 -607 5572 5377 2 773 642 243 46 6 chr9 24643158 24643332 -99432840 + B3A SINE B2 2 182 -16 2 773 486 303 64 55 chr9 24643623 24644059 -99432113 - L1MD LINE L1 -1437 4709 4270 2 773 449 311 85 13 chr9 24644078 24644453 -99431719 - L1MC LINE L1 -2214 3932 3531 2 773 775 270 20 20 chr9 24644631 24644831 -99431341 - B3 SINE B2 -13 203 4 2 773 1186 82 0 0 chr9 24644852 24644999 -99431173 - B1_Mus1 SINE Alu -1 147 1 2 773 329 311 100 39 chr9 24645052 24645433 -99430739 - L1M6 LINE L1 -4632 1864 1461 2 773 258 0 47 23 chr9 24645865 24645908 -99430264 + (TTTTG)n Simple_repeat Simple_repeat 4 47 0 2 773 717 170 67 0 chr9 24645911 24646046 -99430126 - B1_Mus1 SINE Alu 0 148 5 2 773 808 197 7 0 chr9 24646543 24646690 -99429482 - B1_Mus1 SINE Alu 0 148 1 2 773 24 0 0 0 chr9 24647800 24647824 -99428348 + AT_rich Low_complexity Low_complexity 1 24 0 2 773 22 0 0 0 chr9 24647874 24647896 -99428276 + AT_rich Low_complexity Low_complexity 1 22 0 2 773 355 312 145 13 chr9 24648859 24649093 -99427079 + MER82 DNA MER2_type 3 267 -386 2 773 434 250 26 43 chr9 24649168 24649285 -99426887 - B1F SINE Alu -34 115 1 2 773 236 256 57 57 chr9 24649285 24649376 -99426796 + MER82 DNA MER2_type 350 440 -213 2 773 354 361 23 0 chr9 24649432 24649565 -99426607 - MLT2E LTR ERVL -454 174 39 2 773 818 217 322 7 chr9 24649923 24650206 -99425966 + ORR1D1 LTR MaLR 3 374 0 2 773 248 328 101 14 chr9 24650876 24651015 -99425157 + MLT1A0 LTR MaLR 2 152 -213 2 773 788 89 0 82 chr9 24651788 24651984 -99424188 + CT-rich Low_complexity Low_complexity 1 180 0 2 773 273 57 0 0 chr9 24652006 24652041 -99424131 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 773 1279 28 6 22 chr9 24653124 24653304 -99422868 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2 773 233 210 16 0 chr9 24653304 24653366 -99422806 + CT-rich Low_complexity Low_complexity 3 65 0 2 773 2437 73 0 0 chr9 24655868 24656181 -99419991 + L1_Mus1 LINE L1 6246 6558 -9 2 773 617 69 0 11 chr9 24656181 24656269 -99419903 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 2 773 229 263 0 34 chr9 24656709 24656768 -99419404 + B1_Mus1 SINE Alu 13 69 -79 2 773 1012 270 70 36 chr9 24656773 24657157 -99419015 + L1MB3 LINE L1 5734 6130 -53 2 773 257 289 12 24 chr9 24657803 24657888 -99418284 + CT-rich Low_complexity Low_complexity 1 84 0 2 773 324 250 0 38 chr9 24659054 24659133 -99417039 - ID4 SINE ID -3 80 5 2 773 180 0 0 0 chr9 24661125 24661145 -99415027 + (T)n Simple_repeat Simple_repeat 1 20 0 2 773 414 130 293 9 chr9 24661160 24661276 -99414896 - B2_Mm2 SINE B2 0 195 47 2 773 1148 147 23 0 chr9 24661306 24661483 -99414689 - B2_Mm1t SINE B2 -12 181 1 2 773 952 180 6 6 chr9 24661680 24661853 -99414319 - MTD LTR MaLR -229 190 18 2 773 410 279 84 26 chr9 24661868 24662081 -99414091 + L1ME2 LINE L1 5551 5774 -410 2 773 344 279 134 41 chr9 24662158 24662450 -99413722 + L1ME2 LINE L1 5759 6077 -87 2 773 590 291 29 0 chr9 24663209 24663384 -99412788 + B3A SINE B2 1 180 -18 2 773 389 236 91 85 chr9 24663457 24663656 -99412516 - MTEb LTR MaLR 0 379 171 2 773 237 206 0 45 chr9 24663668 24663734 -99412438 + GA-rich Low_complexity Low_complexity 4 66 0 2 773 249 82 32 32 chr9 24664668 24664731 -99411441 + (CAAAAA)n Simple_repeat Simple_repeat 5 67 0 2 773 285 299 84 18 chr9 24665821 24665988 -99410184 - B3A SINE B2 -17 181 4 2 773 250 287 10 31 chr9 24666967 24667064 -99409108 - MIR SINE MIR -58 204 110 2 773 254 73 24 0 chr9 24667537 24667578 -99408594 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 773 339 85 0 0 chr9 24667801 24667848 -99408324 - ORR1B1 LTR MaLR -8 386 340 2 773 7749 76 4 12 chr9 24667861 24669491 -99406681 - L1_Mus2 LINE L1 0 6566 4946 2 773 2430 116 131 23 chr9 24669491 24669925 -99406247 - RLTR45 LTR ERVK 0 482 2 2 773 7240 86 3 15 chr9 24669925 24669966 -99406206 - L1_Mus2 LINE L1 -938 4945 4907 2 773 1873 140 3 37 chr9 24669966 24670326 -99405846 - ORR1B1 LTR MaLR -40 354 1 2 773 1465 35 0 0 chr9 24670331 24670490 -99405682 + B2_Mm1a SINE B2 2 160 -33 2 773 423 0 0 0 chr9 24670490 24670537 -99405635 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 773 1465 35 0 0 chr9 24670537 24670550 -99405622 + B2_Mm1a SINE B2 161 173 -20 2 773 192 229 12 24 chr9 24670568 24670653 -99405519 + CT-rich Low_complexity Low_complexity 4 87 0 2 773 621 338 30 74 chr9 24670746 24671082 -99405090 - LTR40a LTR ERVL -195 324 4 2 773 443 259 129 0 chr9 24671558 24671674 -99404498 + RSINE1 SINE B4 3 133 -32 2 773 23 0 0 0 chr9 24672190 24672213 -99403959 + AT_rich Low_complexity Low_complexity 1 23 0 2 773 4342 70 0 0 chr9 24672215 24672799 -99403373 - L1_Mm LINE L1 -4022 1861 1278 2 773 186 344 52 25 chr9 24672859 24672988 -99403184 - MIRb SINE MIR -140 136 3 2 773 201 333 11 54 chr9 24673449 24673541 -99402631 - L2c LINE L2 -190 3197 3110 2 773 287 343 10 0 chr9 24673809 24673908 -99402264 - Tigger5 DNA MER2_type 0 2406 2307 2 773 546 269 8 0 chr9 24674046 24674176 -99401996 + ID_B1 SINE B4 86 216 -8 2 773 22 35 0 0 chr9 24674368 24674397 -99401775 + AT_rich Low_complexity Low_complexity 1 29 0 2 773 2408 212 73 21 chr9 24674465 24675139 -99401033 + L1_Rod LINE L1 5049 5757 -90 2 773 1103 198 73 66 chr9 24675139 24675442 -99400730 - RLTR20B2 LTR ERVK -272 305 1 2 773 1467 217 39 10 chr9 24675470 24675782 -99400390 - Lx9 LINE L1 -1686 5958 5638 2 773 279 128 0 0 chr9 24675866 24675913 -99400259 - B1_Mus2 SINE Alu -2 145 99 2 773 266 277 78 10 chr9 24675897 24675999 -99400173 - MTC LTR MaLR -309 112 4 2 773 354 108 0 0 chr9 24676045 24676110 -99400062 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 773 293 284 0 0 chr9 24676125 24676195 -99399977 + MLT1B LTR MaLR 4 73 -317 2 773 298 183 28 0 chr9 24676195 24676266 -99399906 - RMER19A LTR ERVK 0 737 665 2 773 1092 201 175 0 chr9 24676253 24676354 -99399818 - RMER19A LTR ERVK -422 315 213 2 773 504 0 0 0 chr9 24676354 24676410 -99399762 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 773 1092 201 175 0 chr9 24676410 24676576 -99399596 - RMER19A LTR ERVK -525 212 2 2 773 289 306 33 0 chr9 24676659 24676784 -99399388 + MLT1B LTR MaLR 247 454 -13 2 773 284 321 47 67 chr9 24676940 24677090 -99399082 + B3A SINE B2 4 150 -48 2 773 601 97 10 10 chr9 24677095 24677199 -99398973 + (CA)n Simple_repeat Simple_repeat 1 104 0 2 773 920 265 24 56 chr9 24679537 24679825 -99396347 + B4 SINE B4 4 282 -10 2 773 5052 35 0 3 chr9 24679993 24680589 -99395583 + L1Md_F2 LINE L1 5989 6582 0 2 773 202 280 0 0 chr9 24680749 24680799 -99395373 + L2b LINE L2 3290 3339 -36 2 773 295 273 11 43 chr9 24682070 24682162 -99394010 - MER117 DNA MER1_type -30 167 79 2 773 438 20 0 0 chr9 24684142 24684193 -99391979 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 2 773 266 302 74 25 chr9 24684620 24684742 -99391430 - MLT1F1 LTR MaLR -424 145 18 2 773 206 293 17 0 chr9 24685232 24685290 -99390882 + MIRm SINE MIR 88 146 -130 2 773 658 78 0 0 chr9 24685858 24685948 -99390224 + B1_Mus2 SINE Alu 1 90 -57 2 773 530 262 51 41 chr9 24686393 24686411 -99389761 - B3A SINE B2 0 198 184 2 773 1078 56 12 31 chr9 24686411 24686668 -99389504 + (TG)n Simple_repeat Simple_repeat 1 251 0 2 773 530 262 51 41 chr9 24686668 24686843 -99389329 - B3A SINE B2 -15 183 3 2 773 499 281 113 36 chr9 24686874 24687121 -99389051 + Tigger5 DNA MER2_type 2140 2405 -1 2 773 701 103 84 0 chr9 24687593 24687700 -99388472 - PB1D9 SINE Alu 0 120 5 2 773 740 293 60 8 chr9 24687771 24688036 -99388136 + MER2 DNA MER2_type 21 299 -46 2 773 192 241 0 0 chr9 24688115 24688173 -99387999 + GA-rich Low_complexity Low_complexity 3 60 0 2 773 594 0 0 0 chr9 24688856 24688922 -99387250 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 773 519 95 0 0 chr9 24688922 24688996 -99387176 + (GGA)n Simple_repeat Simple_repeat 3 76 0 2 773 487 200 120 40 chr9 24690859 24690984 -99385188 + B1_Mur2 SINE Alu 13 147 -2 2 773 1365 238 75 24 chr9 24691020 24691413 -99384759 + MTD LTR MaLR 1 405 -14 2 773 222 37 0 0 chr9 24691431 24691458 -99384714 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 2 773 555 317 66 13 chr9 24692013 24692240 -99383932 - MLT1A0 LTR MaLR -112 253 15 2 773 21 0 0 0 chr9 24693946 24693967 -99382205 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 208 378 0 22 chr9 24695442 24695534 -99380638 + MIRm SINE MIR 96 185 -91 2 773 1010 166 86 24 chr9 24696519 24696729 -99379443 - URR1B DNA MER1_type 0 225 3 2 773 201 114 29 0 chr9 24696731 24696766 -99379406 - L2c LINE L2 -86 3301 3266 2 773 281 275 0 24 chr9 24696797 24696879 -99379293 + LTR16A LTR ERVL 1 80 -371 2 773 22 56 0 0 chr9 24697543 24697579 -99378593 + AT_rich Low_complexity Low_complexity 1 36 0 2 773 330 229 47 24 chr9 24697914 24697999 -99378173 + L1MA7 LINE L1 5774 5860 -431 2 773 567 165 0 0 chr9 24698369 24698478 -99377694 + (CA)n Simple_repeat Simple_repeat 1 109 0 3 773 338 156 31 20 chr9 24699990 24700088 -99376084 + CT-rich Low_complexity Low_complexity 1 99 0 3 773 442 297 65 24 chr9 24700093 24700262 -99375910 + MTEb LTR MaLR 201 376 -3 3 773 341 322 23 23 chr9 24700684 24700859 -99375313 + GA-rich Low_complexity Low_complexity 3 177 0 3 773 1563 186 53 24 chr9 24702592 24702991 -99373181 - ORR1B2 LTR MaLR -8 413 1 3 773 1683 157 88 3 chr9 24702995 24703314 -99372858 - MTC LTR MaLR -75 346 1 3 773 216 0 0 0 chr9 24704026 24704050 -99372122 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 773 300 119 0 0 chr9 24704425 24704484 -99371688 + (T)n Simple_repeat Simple_repeat 1 59 0 3 773 701 214 14 7 chr9 24706015 24706161 -99370011 + B1F SINE Alu 3 149 0 3 773 342 0 0 0 chr9 24706540 24706578 -99369594 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 773 183 152 0 0 chr9 24707225 24707271 -99368901 + (TTA)n Simple_repeat Simple_repeat 1 46 0 3 773 400 252 14 36 chr9 24709745 24709885 -99366287 + MLT1A1 LTR MaLR 268 404 -4 3 773 218 390 72 0 chr9 24712863 24713058 -99363114 + L2a LINE L2 3033 3241 -185 3 773 292 240 0 28 chr9 24713157 24713264 -99362908 + G-rich Low_complexity Low_complexity 6 109 0 3 773 308 319 35 0 chr9 24714389 24714505 -99361667 - Tigger9b DNA MER2_type 0 624 505 3 773 1015 179 77 0 chr9 24714637 24714832 -99361340 + B3 SINE B2 1 210 -6 3 773 244 251 35 24 chr9 24714848 24714953 -99361219 - B1F SINE Alu 0 149 37 3 773 867 70 0 0 chr9 24715532 24715660 -99360512 + (CA)n Simple_repeat Simple_repeat 2 129 0 3 773 380 231 0 86 chr9 24715722 24715850 -99360322 + MLT1A1 LTR MaLR 291 407 -1 3 773 225 0 0 0 chr9 24717221 24717246 -99358926 + (A)n Simple_repeat Simple_repeat 1 25 0 3 773 312 326 0 0 chr9 24718271 24718360 -99357812 - PB1D10 SINE Alu -28 89 1 3 773 243 249 22 6 chr9 24718732 24718816 -99357356 - MIRm SINE MIR -112 164 73 3 773 1154 96 11 11 chr9 24719049 24719228 -99356944 + B2_Mm1t SINE B2 11 189 -4 3 773 721 114 0 17 chr9 24719521 24719637 -99356535 - RLTR11B LTR ERVK -4 449 336 3 773 510 115 17 6 chr9 24719663 24719776 -99356396 - B1_Mus1 SINE Alu 0 148 31 3 773 452 285 70 34 chr9 24719734 24719914 -99356258 - MLT1E2 LTR MaLR -186 494 284 3 773 3678 127 37 83 chr9 24719984 24720771 -99355401 - RMER17A LTR ERVK 0 751 1 3 773 436 111 0 0 chr9 24721283 24721355 -99354817 + RLTR11B LTR ERVK 1 72 -381 3 773 282 271 47 12 chr9 24721443 24721529 -99354643 + MLT1E2 LTR MaLR 522 610 -17 3 773 3528 32 0 5 chr9 24721914 24722328 -99353844 - L1Md_F3 LINE L1 -2 6582 6171 3 773 827 275 17 51 chr9 24722826 24723121 -99353051 - MER2 DNA MER2_type -60 285 1 3 773 1206 103 21 42 chr9 24723282 24723474 -99352698 - B2_Mm2 SINE B2 -5 190 3 3 773 23 0 0 0 chr9 24724287 24724310 -99351862 + AT_rich Low_complexity Low_complexity 1 23 0 3 773 245 234 16 0 chr9 24725072 24725136 -99351036 - MIR3 SINE MIR -47 161 97 3 773 804 21 0 0 chr9 24726236 24726330 -99349842 + (TC)n Simple_repeat Simple_repeat 1 94 0 3 773 8772 25 0 1 chr9 24728329 24729846 -99346326 - L1Md_A LINE L1 0 6582 5069 3 773 597 222 66 66 chr9 24730305 24730503 -99345669 + MTEa LTR MaLR 1 198 -181 3 773 1152 88 0 0 chr9 24730532 24730679 -99345493 + B1_Mus1 SINE Alu 2 148 0 3 773 423 56 0 0 chr9 24730679 24730733 -99345439 + (A)n Simple_repeat Simple_repeat 1 54 0 3 773 291 322 16 24 chr9 24730993 24731117 -99345055 - MLT1B LTR MaLR -267 123 1 3 773 466 209 90 9 chr9 24731243 24731354 -99344818 + B1F SINE Alu 1 120 -29 3 773 195 42 0 0 chr9 24731382 24731406 -99344766 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 773 3497 199 77 27 chr9 24731414 24732221 -99343951 + L1_Mur3 LINE L1 296 1142 -6586 3 773 1277 103 11 0 chr9 24732223 24732398 -99343774 + B2_Mm1t SINE B2 3 179 -14 3 773 283 71 0 0 chr9 24732463 24732505 -99343667 + B2_Mm2 SINE B2 60 101 -94 3 773 342 0 0 0 chr9 24732523 24732561 -99343611 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 773 12377 154 47 24 chr9 24732572 24733784 -99342388 + L1_Mur3 LINE L1 1130 2371 -3509 3 773 3277 41 5 8 chr9 24733784 24734181 -99341991 - MTA_Mm LTR MaLR 0 396 1 3 773 12377 164 56 29 chr9 24734181 24735344 -99340828 + L1_Mur3 LINE L1 2372 3566 -2314 3 773 2894 122 76 37 chr9 24735344 24735857 -99340315 - RMER16 LTR ERVK 0 533 1 3 773 12377 164 56 29 chr9 24735857 24736182 -99339990 + L1_Mur3 LINE L1 3567 3904 -1976 3 773 4002 222 39 28 chr9 24736179 24737148 -99339024 + Lx7 LINE L1 5749 6728 -968 3 773 3067 26 2 124 chr9 24737151 24737595 -99338577 + RLTR10 LTR ERVK 1 390 0 3 773 8144 58 3 8 chr9 24737597 24738614 -99337558 + RLTR10-int LTR ERVK 10 998 -989 3 773 349 266 39 8 chr9 24738678 24738807 -99337365 + RLTR10-int LTR ERVK 1462 1594 -5987 3 773 8904 19 5 0 chr9 24738889 24739879 -99336293 + RLTR10-int LTR ERVK 990 1984 -3 3 773 3067 26 2 124 chr9 24739881 24740325 -99335847 + RLTR10 LTR ERVK 1 390 0 3 773 3113 206 24 10 chr9 24740330 24740958 -99335214 + Lx7 LINE L1 6731 7367 -329 3 773 734 170 48 28 chr9 24740934 24741079 -99335093 + RMER1B Other Other 908 1055 -11 3 773 320 239 8 66 chr9 24741090 24741208 -99334964 + L1M2 LINE L1 5675 5793 -519 3 773 1056 287 56 28 chr9 24741209 24741409 -99334763 + MTE2b LTR MaLR 3 212 -167 3 773 1579 207 76 56 chr9 24741409 24741818 -99334354 - MTD LTR MaLR 0 419 3 3 773 1056 287 56 28 chr9 24741818 24741972 -99334200 + MTE2b LTR MaLR 213 367 -12 3 773 712 311 50 28 chr9 24741975 24742339 -99333833 + L1MB1 LINE L1 5783 6154 -14 3 773 1362 77 16 21 chr9 24742821 24743007 -99333165 + B2_Mm2 SINE B2 2 186 -9 3 773 2684 170 106 76 chr9 24743778 24744464 -99331708 + RMER13B LTR ERVK 5 711 -197 3 773 1031 279 110 31 chr9 24744882 24745429 -99330743 + L1M4c LINE L1 1106 1695 -4689 3 773 414 285 29 21 chr9 24745504 24745644 -99330528 + ID_B1 SINE B4 82 222 -2 3 773 634 294 50 88 chr9 24745906 24746223 -99329949 + MER2 DNA MER2_type 38 342 -3 3 773 24 32 0 0 chr9 24746232 24746263 -99329909 + AT_rich Low_complexity Low_complexity 1 31 0 3 773 520 354 38 0 chr9 24746395 24746607 -99329565 - MLT2F LTR ERVL -227 436 217 3 773 1062 58 0 0 chr9 24746706 24746844 -99329328 + (GGGAA)n Simple_repeat Simple_repeat 4 141 0 3 773 2316 142 16 28 chr9 24746853 24747282 -99328890 - RMER4B LTR ERVK -161 424 1 3 773 240 35 0 0 chr9 24749749 24749778 -99326394 + (T)n Simple_repeat Simple_repeat 1 29 0 3 773 1171 75 0 7 chr9 24749784 24749931 -99326241 - B1_Mus1 SINE Alu -1 147 2 3 773 1072 49 0 7 chr9 24750262 24750405 -99325767 + B1_Mus1 SINE Alu 7 148 0 3 773 868 267 96 31 chr9 24750921 24751277 -99324895 - MTE2a LTR MaLR 0 379 1 3 773 900 247 105 4 chr9 24751361 24751609 -99324563 - B4A SINE B4 -17 275 3 3 773 242 244 7 0 chr9 24751994 24752129 -99324043 + (TG)n Simple_repeat Simple_repeat 1 136 0 3 773 2368 71 31 3 chr9 24752299 24752623 -99323549 + L1_Mus3 LINE L1 6305 6637 -1 3 773 184 0 97 0 chr9 24752643 24752674 -99323498 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 773 476 252 25 0 chr9 24752889 24753008 -99323164 + RSINE1 SINE B4 2 123 -42 3 773 3887 148 140 19 chr9 24753625 24754424 -99321748 - RMER19B LTR ERVK -6 896 1 3 773 30 0 0 0 chr9 24754539 24754569 -99321603 + AT_rich Low_complexity Low_complexity 1 30 0 3 773 6736 59 25 1 chr9 24754729 24755598 -99320574 - Lx3_Mus LINE L1 0 7009 6120 3 773 7501 43 3 1 chr9 24756069 24756966 -99319206 - L1Md_F2 LINE L1 0 6582 5684 3 773 210 71 0 0 chr9 24757927 24757955 -99318217 + (A)n Simple_repeat Simple_repeat 1 28 0 3 773 603 138 110 13 chr9 24758475 24758629 -99317543 - Lx9 LINE L1 -2 7642 7474 3 773 207 0 0 0 chr9 24759667 24759690 -99316482 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 773 1068 60 8 0 chr9 24759690 24759824 -99316348 - B1_Mus1 SINE Alu -9 139 5 3 773 515 258 131 6 chr9 24761434 24761594 -99314578 - MTD LTR MaLR -17 402 223 3 773 563 167 442 0 chr9 24761863 24762019 -99314153 + URR1B DNA MER1_type 1 225 0 3 773 942 156 32 149 chr9 24762693 24763002 -99313170 - Lx9 LINE L1 -2 7642 7370 3 773 629 247 73 0 chr9 24763002 24763152 -99313020 - MTD LTR MaLR -237 182 22 3 773 310 284 0 12 chr9 24763256 24763338 -99312834 - BC1_Mm scRNA scRNA -63 89 9 3 773 445 297 167 26 chr9 24763433 24763703 -99312469 - L1MB7 LINE L1 -78 6106 5799 3 773 229 308 137 29 chr9 24763702 24763906 -99312266 - L1M5 LINE L1 -425 5754 5529 3 773 478 232 85 16 chr9 24763880 24764182 -99311990 - L1MB7 LINE L1 -842 5517 5191 3 773 845 267 45 31 chr9 24764777 24765063 -99311109 - B4A SINE B4 0 292 3 3 773 626 239 45 0 chr9 24765107 24765262 -99310910 - B3A SINE B2 -36 162 1 3 773 612 0 0 0 chr9 24766473 24766541 -99309631 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 773 320 358 71 7 chr9 24768046 24768252 -99307920 - MIRc SINE MIR -14 254 27 3 773 770 255 26 0 chr9 24768383 24768575 -99307597 + B3 SINE B2 5 201 -15 3 773 23 0 0 0 chr9 24768575 24768598 -99307574 + AT_rich Low_complexity Low_complexity 1 23 0 3 773 620 265 138 20 chr9 24769341 24769472 -99306700 + Lx8 LINE L1 7188 7317 -156 3 773 420 20 0 0 chr9 24769472 24769521 -99306651 + (TAA)n Simple_repeat Simple_repeat 3 51 0 3 773 620 265 138 20 chr9 24769521 24769643 -99306529 + Lx8 LINE L1 7318 7470 -3 3 773 1302 211 24 135 chr9 24770125 24770546 -99305626 + ORR1D1 LTR MaLR 1 374 0 3 773 1161 299 20 6 chr9 24770682 24771025 -99305147 - MTEb LTR MaLR -9 370 23 3 773 296 346 50 24 chr9 24771077 24771242 -99304930 - MIRc SINE MIR -75 193 27 3 773 392 155 28 0 chr9 24771283 24771354 -99304818 - B1F SINE Alu 0 149 77 3 773 22 0 0 0 chr9 24772586 24772608 -99303564 + AT_rich Low_complexity Low_complexity 1 22 0 4 774 23 54 0 0 chr9 24772873 24772910 -99303262 + AT_rich Low_complexity Low_complexity 1 37 0 4 774 189 0 0 0 chr9 24773262 24773283 -99302889 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 774 507 33 0 0 chr9 24774883 24774944 -99301228 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 774 3148 144 16 180 chr9 24776584 24777312 -99298860 + RMER19C LTR ERVK 3 611 0 4 774 238 339 56 32 chr9 24778158 24778283 -99297889 - LTR33 LTR ERVL -80 435 308 4 774 321 359 75 0 chr9 24780697 24780909 -99295263 - MamGypLTR1a LTR Gypsy -515 269 42 4 774 189 0 0 0 chr9 24781053 24781074 -99295098 + (A)n Simple_repeat Simple_repeat 1 21 0 4 774 232 289 40 0 chr9 24781211 24781296 -99294876 + MIRm SINE MIR 52 146 -122 4 774 1640 329 13 30 chr9 24783305 24784003 -99292169 - Lx8 LINE L1 -164 7309 6624 4 774 28 29 0 0 chr9 24784091 24784126 -99292046 + AT_rich Low_complexity Low_complexity 1 35 0 4 774 6933 123 9 10 chr9 24784299 24785747 -99290425 - Lx LINE L1 -6 6648 5205 4 774 6107 153 30 24 chr9 24785745 24786834 -99289338 + L1_Mur2 LINE L1 4109 5204 -673 4 774 525 269 69 5 chr9 24787055 24787272 -99288900 + L1M3 LINE L1 2726 2956 -3184 4 774 972 209 41 0 chr9 24787335 24787531 -99288641 + B3 SINE B2 8 211 -5 4 774 3541 200 58 8 chr9 24787543 24788288 -99287884 - Lx9 LINE L1 -1 7643 6862 4 774 790 189 461 0 chr9 24788344 24788561 -99287611 + Lx9 LINE L1 6514 6830 -814 4 774 260 227 24 96 chr9 24788604 24788687 -99287485 + ID4 SINE ID 4 80 -3 4 774 392 152 0 25 chr9 24788765 24788846 -99287326 + GA-rich Low_complexity Low_complexity 3 81 0 4 774 1089 265 20 56 chr9 24788909 24789265 -99286907 + Lx8 LINE L1 6244 6586 -887 4 774 710 318 128 14 chr9 24789415 24789766 -99286406 - MLT1D LTR MaLR -52 453 63 4 774 637 255 13 0 chr9 24790064 24790147 -99286025 + ID SINE ID 1 85 -139 4 774 293 272 93 46 chr9 24790147 24790255 -99285917 + PB1D10 SINE Alu 4 116 -1 4 774 292 319 62 66 chr9 24790686 24790991 -99285181 + L2b LINE L2 3053 3356 -19 4 774 402 293 144 41 chr9 24791199 24791345 -99284827 + RSINE1 SINE B4 3 163 -2 4 774 493 289 120 53 chr9 24793178 24793478 -99282694 + MLT2B5 LTR ERVL 85 404 -197 4 774 343 308 50 12 chr9 24795074 24795235 -99280937 + L1ME2z LINE L1 6228 6394 -50 4 774 256 91 0 0 chr9 24795240 24795273 -99280899 + Lx4B LINE L1 6504 6536 -522 4 774 344 372 7 27 chr9 24795746 24795895 -99280277 + MTEa LTR MaLR 1 146 -233 4 774 246 360 12 53 chr9 24795895 24795916 -99280256 + MT2A LTR ERVL 1 163 -370 4 774 2273 246 135 17 chr9 24795922 24796567 -99279605 + Lx8 LINE L1 6310 7030 -443 4 774 1098 267 251 81 chr9 24796650 24797338 -99278834 + Lx5 LINE L1 6246 7050 0 4 774 401 285 14 14 chr9 24797714 24797860 -99278312 + MT2A LTR ERVL 192 337 -196 4 774 1614 189 95 22 chr9 24797927 24798285 -99277887 + ORR1C2 LTR MaLR 1 384 0 4 774 312 308 144 0 chr9 24799472 24799618 -99276554 - MIR SINE MIR -32 230 64 4 774 803 254 39 3 chr9 24801252 24801458 -99274714 - B3A SINE B2 0 216 1 4 774 276 100 0 0 chr9 24802572 24802612 -99273560 + (CAT)n Simple_repeat Simple_repeat 1 40 0 4 774 188 61 0 57 chr9 24802866 24802901 -99273271 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 774 409 290 184 19 chr9 24802988 24803146 -99273026 + B3 SINE B2 3 186 -30 4 774 5079 62 21 25 chr9 24803199 24803877 -99272295 + L1Md_F2 LINE L1 5908 6582 0 4 774 350 262 65 65 chr9 24804328 24804483 -99271689 + MTEb LTR MaLR 213 376 -3 4 774 308 331 138 22 chr9 24804514 24804826 -99271346 - L1MB1 LINE L1 -3 6165 5818 4 774 189 326 21 11 chr9 24804975 24805068 -99271104 + MIR3 SINE MIR 111 204 -4 4 774 13076 80 61 12 chr9 24806410 24808495 -99267677 + L1VL2 LINE L1 1108 3283 -631 4 774 22 80 0 0 chr9 24809037 24809087 -99267085 + AT_rich Low_complexity Low_complexity 1 50 0 4 774 943 289 60 60 chr9 24809284 24809589 -99266583 + MLT1A0 LTR MaLR 1 307 -58 4 774 5028 62 6 0 chr9 24809589 24810214 -99265958 - L1_Mus1 LINE L1 0 6567 5939 4 774 943 289 60 60 chr9 24810214 24810273 -99265899 + MLT1A0 LTR MaLR 308 365 0 4 774 207 0 0 0 chr9 24811226 24811249 -99264923 + (A)n Simple_repeat Simple_repeat 1 23 0 4 774 3952 38 8 0 chr9 24811458 24811928 -99264244 + L1Md_F2 LINE L1 6109 6582 0 4 774 572 73 12 0 chr9 24812701 24812783 -99263389 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 774 659 316 70 15 chr9 24814230 24814503 -99261669 + B4A SINE B4 3 290 -2 4 774 312 244 12 12 chr9 24814899 24814982 -99261190 + L1MC5 LINE L1 7302 7384 -577 4 774 5198 197 115 26 chr9 24815041 24816379 -99259793 + Lx9 LINE L1 6178 7634 -10 4 774 396 138 0 0 chr9 24817097 24817162 -99259010 + (CAA)n Simple_repeat Simple_repeat 2 66 0 4 774 195 333 18 0 chr9 24818784 24818841 -99257331 + MIRc SINE MIR 19 76 -192 4 774 563 164 164 0 chr9 24820009 24820161 -99256011 + RLTR47_MM LTR ERV1 356 532 0 4 774 361 295 68 37 chr9 24820620 24820782 -99255390 + MuRRS4-int LTR ERV1 526 692 -6864 4 774 249 33 0 0 chr9 24821016 24821046 -99255126 + (A)n Simple_repeat Simple_repeat 1 30 0 4 774 1619 318 65 60 chr9 24821331 24822590 -99253582 + MuRRS4-int LTR ERV1 1191 2456 -5100 4 774 1884 314 64 44 chr9 24822645 24824195 -99251977 + MuRRS4-int LTR ERV1 2757 5501 -2055 4 774 1785 76 139 6 chr9 24824210 24824526 -99251646 + RLTR47_MM LTR ERV1 84 441 -91 4 774 747 0 0 0 chr9 24824528 24824611 -99251561 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 4 774 904 136 12 0 chr9 24824611 24824773 -99251399 + (GGGA)n Simple_repeat Simple_repeat 3 166 0 4 774 434 292 0 9 chr9 24824774 24824881 -99251291 + B4A SINE B4 164 269 -23 4 774 447 78 0 0 chr9 24824884 24824948 -99251224 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 774 489 110 0 0 chr9 24824951 24825024 -99251148 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 4 774 302 154 0 0 chr9 24825095 24825147 -99251025 + HAL1-3A_ME LINE L1 1971 2022 -836 4 774 317 355 121 11 chr9 24825403 24825697 -99250475 + L1M4 LINE L1 2364 2692 -3454 4 774 236 244 0 0 chr9 24827295 24827340 -99248832 + polypyrimidine Low_complexity Low_complexity 3 47 0 4 774 225 258 16 0 chr9 24827439 24827501 -99248671 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 774 258 81 0 0 chr9 24827907 24827944 -99248228 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 4 774 929 190 57 71 chr9 24828106 24828461 -99247711 + RLTRETN_Mm LTR ERVK 6 409 0 4 774 313 191 11 11 chr9 24828577 24828696 -99247476 + L1Md_F2 LINE L1 6471 6582 0 4 774 774 105 0 0 chr9 24828705 24828819 -99247353 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 4 774 435 247 0 0 chr9 24828975 24829064 -99247108 + MTEb LTR MaLR 23 111 -248 4 774 506 219 6 64 chr9 24829061 24829217 -99246955 + MTEb LTR MaLR 214 360 -19 4 774 366 241 103 0 chr9 24829233 24829349 -99246823 - MER5A DNA MER1_type -7 182 55 4 774 2168 95 13 0 chr9 24830037 24830353 -99245819 + ORR1A2 LTR MaLR 1 320 -7 4 774 711 190 23 6 chr9 24832512 24832687 -99243485 + GA-rich Low_complexity Low_complexity 2 179 0 4 774 579 10 48 48 chr9 24833533 24833637 -99242535 + L1Md_F3 LINE L1 6480 6583 -1 4 774 1978 234 100 9 chr9 24833771 24834311 -99241861 + Lx7 LINE L1 6691 7279 -417 4 774 397 292 102 64 chr9 24834396 24834689 -99241483 - B4 SINE B4 -11 281 10 4 774 1242 240 84 19 chr9 24834909 24835295 -99240877 - MTD LTR MaLR -14 405 1 4 774 30 0 0 0 chr9 24835487 24835517 -99240655 + AT_rich Low_complexity Low_complexity 1 30 0 4 774 599 238 109 0 chr9 24835535 24835728 -99240444 - Lx9 LINE L1 -64 7580 7367 4 774 319 272 299 0 chr9 24835760 24835944 -99240228 - Lx9 LINE L1 -354 7290 7052 4 774 762 151 0 8 chr9 24835963 24836090 -99240082 - L1VL2 LINE L1 -5976 359 234 4 774 230 246 42 28 chr9 24836087 24836158 -99240014 - Lx9 LINE L1 -614 7030 6959 4 774 2876 68 29 39 chr9 24836206 24836621 -99239551 + RLTR10A LTR ERVK 1 411 0 4 774 1524 131 78 16 chr9 24836623 24836922 -99239250 + IAP-d-int LTR ERVK 54 602 -1385 4 774 821 173 6 19 chr9 24836919 24837078 -99239094 + IAP-d-int LTR ERVK 347 503 -6039 4 774 1952 61 93 12 chr9 24837078 24837560 -99238612 + IAP-d-int LTR ERVK 5007 5527 -1015 4 774 1670 69 5 5 chr9 24837563 24837782 -99238390 + IAP-d-int LTR ERVK 5666 5884 -658 4 774 5149 74 19 14 chr9 24837783 24838479 -99237693 + RLTR10-int LTR ERVK 1288 1986 -1 4 774 2963 65 26 39 chr9 24838479 24838895 -99237277 + RLTR10A LTR ERVK 1 411 0 4 774 10461 85 6 9 chr9 24839488 24841850 -99234322 + L1VL2 LINE L1 28 2383 -1232 4 774 1339 254 54 56 chr9 24841855 24842302 -99233870 - Lx8 LINE L1 -292 7181 6736 4 774 520 101 188 27 chr9 24842356 24842468 -99233704 + ORR1B1 LTR MaLR 24 153 -241 4 774 645 271 293 40 chr9 24842468 24842813 -99233359 - Lx8 LINE L1 -820 6653 6222 4 774 207 0 0 0 chr9 24842851 24842874 -99233298 + (CAT)n Simple_repeat Simple_repeat 3 25 0 4 774 213 39 0 0 chr9 24844578 24844604 -99231568 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 774 186 255 21 0 chr9 24845862 24845909 -99230263 - MIRc SINE MIR -139 129 82 4 774 342 0 0 0 chr9 24847569 24847607 -99228565 + (A)n Simple_repeat Simple_repeat 1 38 0 4 774 224 369 25 12 chr9 24847985 24848147 -99228025 - MIR SINE MIR -70 192 29 4 774 278 327 42 11 chr9 24848225 24848428 -99227744 + L1MA4 LINE L1 5715 5932 -365 4 774 385 239 23 0 chr9 24848910 24848998 -99227174 + PB1D9 SINE Alu 2 91 -29 4 774 1597 53 0 0 chr9 24849122 24849312 -99226860 + B2_Mm1a SINE B2 1 190 -3 4 774 1113 55 0 0 chr9 24849698 24849843 -99226329 + (CA)n Simple_repeat Simple_repeat 1 145 0 4 774 294 317 67 0 chr9 24850010 24850130 -99226042 + L1M5 LINE L1 5547 5674 -450 4 774 649 290 27 14 chr9 24850635 24850948 -99225224 - L1M2 LINE L1 -601 5690 5372 4 774 2288 36 4 4 chr9 24851348 24851610 -99224562 + L1_Mm LINE L1 5326 5586 -297 4 774 8190 54 0 0 chr9 24851610 24852606 -99223566 + L1Md_T LINE L1 5587 6582 0 4 774 2288 36 4 4 chr9 24852606 24852620 -99223552 + L1_Mm LINE L1 5587 5601 -282 4 774 274 242 158 0 chr9 24853371 24853466 -99222706 + MER5A1 DNA MER1_type 3 112 -54 5 774 284 350 28 7 chr9 24853551 24853692 -99222480 + B1F SINE Alu 4 147 -2 5 774 228 279 24 37 chr9 24853699 24853781 -99222391 + ID4 SINE ID 1 81 -2 5 774 315 289 143 11 chr9 24854094 24854276 -99221896 - MIR SINE MIR 0 262 57 5 774 259 330 71 9 chr9 24855090 24855203 -99220969 - ORR1D2 LTR MaLR -211 159 40 5 774 360 0 0 0 chr9 24856878 24856918 -99219254 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 5 774 1070 95 0 0 chr9 24856918 24857055 -99219117 - B1_Mur4 SINE Alu -12 138 2 5 774 229 341 30 101 chr9 24857139 24857162 -99219010 - MIRb SINE MIR -34 234 213 5 774 342 0 0 0 chr9 24857162 24857200 -99218972 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 774 243 298 45 81 chr9 24857200 24857405 -99218767 - MIR SINE MIR -56 212 16 5 774 288 0 0 0 chr9 24858197 24858229 -99217943 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 774 946 271 59 55 chr9 24858470 24858623 -99217549 + RMER5 LTR ERV1 76 229 -305 5 774 3219 31 48 0 chr9 24858623 24859015 -99217157 + RLTR10A LTR ERVK 1 411 0 5 774 946 271 59 55 chr9 24859015 24859318 -99216854 + RMER5 LTR ERV1 230 534 0 5 774 346 236 97 26 chr9 24859412 24859525 -99216647 - L1MA5 LINE L1 -1 6299 6179 5 774 21 0 0 0 chr9 24859990 24860011 -99216161 + AT_rich Low_complexity Low_complexity 1 21 0 5 774 306 182 0 0 chr9 24862787 24862853 -99213319 + CT-rich Low_complexity Low_complexity 4 69 0 5 774 184 170 19 19 chr9 24863294 24863348 -99212824 + CT-rich Low_complexity Low_complexity 4 57 0 5 774 255 263 40 0 chr9 24863423 24863499 -99212673 + MIRc SINE MIR 61 139 -129 5 774 681 85 0 0 chr9 24864495 24864601 -99211571 + (GA)n Simple_repeat Simple_repeat 1 106 0 5 774 237 65 0 0 chr9 24865010 24865041 -99211131 + (CTG)n Simple_repeat Simple_repeat 1 31 0 5 774 2093 166 11 5 chr9 24865056 24865426 -99210746 - RLTR17 LTR ERVK -320 372 1 5 774 2948 189 41 43 chr9 24865426 24866151 -99210021 - RMER3D-int LTR ERVK 0 2842 2119 5 774 345 204 83 50 chr9 24866141 24866368 -99209804 + RMER3D-int LTR ERVK 652 1081 -1761 5 774 372 308 30 15 chr9 24866370 24866505 -99209667 - MLT2D LTR ERVL -189 225 89 5 774 1136 286 122 28 chr9 24866544 24867149 -99209023 + L1M3 LINE L1 4482 5143 -997 5 774 347 254 58 17 chr9 24867146 24867266 -99208906 + L1M3 LINE L1 5360 5484 -828 5 774 761 238 79 0 chr9 24867276 24867465 -99208707 + B3 SINE B2 7 210 -6 5 774 440 237 80 34 chr9 24867472 24867647 -99208525 + L1M3 LINE L1 5473 5655 -645 5 774 219 69 0 0 chr9 24867950 24867979 -99208193 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 5 774 5651 212 110 129 chr9 24868853 24869858 -99206314 - Lx9 LINE L1 -75 7569 6541 5 774 1320 85 23 0 chr9 24869858 24870034 -99206138 + B2_Mm2 SINE B2 2 181 -14 5 774 5651 212 110 129 chr9 24870034 24870105 -99206067 - Lx9 LINE L1 -1104 6540 6488 5 774 409 98 313 26 chr9 24870105 24870220 -99205952 + B2_Mm2 SINE B2 47 194 -1 5 774 5651 212 110 129 chr9 24870220 24870421 -99205751 - Lx9 LINE L1 -1104 6487 6336 5 774 2082 189 29 62 chr9 24870421 24871001 -99205171 + RLTR31_Mm LTR ERVK 1 561 0 5 774 5651 209 89 50 chr9 24871001 24872678 -99203494 - Lx9 LINE L1 -1309 6335 4434 5 774 1728 175 82 48 chr9 24872685 24873271 -99202901 - Lx9 LINE L1 -4275 1572 956 5 774 820 211 172 0 chr9 24873271 24873451 -99202721 - B3 SINE B2 -5 211 1 5 774 1603 171 130 60 chr9 24873451 24873491 -99202681 - Lx9 LINE L1 -6653 955 927 5 774 495 59 0 0 chr9 24874041 24874109 -99202063 - ORR1A1 LTR MaLR 0 346 279 5 774 294 281 21 10 chr9 24874115 24874212 -99201960 - ORR1A1 LTR MaLR -319 100 3 5 774 856 297 152 59 chr9 24874925 24875515 -99200657 + Lx9 LINE L1 6994 7638 -6 5 774 227 294 0 0 chr9 24875943 24875994 -99200178 + tRNA-Ala-GCY_ tRNA tRNA 16 66 -9 5 774 956 262 15 0 chr9 24876071 24876277 -99199895 - B3 SINE B2 -6 210 2 5 774 417 39 0 0 chr9 24876382 24876433 -99199739 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 774 2201 192 13 0 chr9 24876433 24876818 -99199354 + Lx5 LINE L1 6642 7031 -19 5 774 336 83 0 0 chr9 24876818 24876866 -99199306 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 774 237 24 71 0 chr9 24876943 24876985 -99199187 + (TTATA)n Simple_repeat Simple_repeat 2 46 0 5 774 252 270 32 0 chr9 24877018 24877081 -99199091 - ID SINE ID -155 69 5 5 774 396 357 19 13 chr9 24877126 24877282 -99198890 - MER21B LTR ERV1 -643 220 64 5 774 1474 335 62 9 chr9 24878350 24878991 -99197181 - Lx8 LINE L1 -250 7223 6549 5 774 1229 14 0 0 chr9 24880873 24881011 -99195161 + B1_Mus2 SINE Alu 1 138 -9 5 774 223 49 49 0 chr9 24881011 24881052 -99195120 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 774 1030 138 43 22 chr9 24881617 24881802 -99194370 - B2_Mm2 SINE B2 -6 189 1 5 774 633 90 0 0 chr9 24881906 24881995 -99194177 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 5 774 351 323 74 10 chr9 24882657 24882860 -99193312 - L1ME3A LINE L1 -117 6056 5841 5 774 2303 162 68 2 chr9 24883446 24883841 -99192331 - MTC LTR MaLR 0 421 1 5 774 26 0 0 0 chr9 24884636 24884662 -99191510 + AT_rich Low_complexity Low_complexity 1 26 0 5 774 2152 151 9 14 chr9 24884663 24885007 -99191165 - Lx4A LINE L1 -1 7057 6716 5 774 640 308 77 7 chr9 24885156 24885441 -99190731 + MER2 DNA MER2_type 1 305 -40 5 774 192 374 40 0 chr9 24885637 24885736 -99190436 + MIR SINE MIR 46 148 -60 5 774 1098 101 124 0 chr9 24885973 24886142 -99190030 + B2_Mm1t SINE B2 4 193 0 5 774 12500 134 15 6 chr9 24886175 24889109 -99187063 + Lx4B LINE L1 3897 6865 -193 5 774 183 80 0 0 chr9 24890008 24890033 -99186139 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 774 194 333 250 9 chr9 24890342 24890454 -99185718 + MIR SINE MIR 3 141 -121 5 774 28 48 0 0 chr9 24890476 24890518 -99185654 + AT_rich Low_complexity Low_complexity 1 42 0 5 774 182 0 107 0 chr9 24890542 24890570 -99185602 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 5 774 3222 104 11 2 chr9 24890576 24891039 -99185133 - L1_Mus3 LINE L1 -5 6633 6167 5 774 283 276 211 8 chr9 24891139 24891267 -99184905 + MLT2F LTR ERVL 6 159 -504 5 774 250 216 149 0 chr9 24891341 24891415 -99184757 + ERVL-int LTR ERVL 2277 2361 -3353 5 774 382 301 85 6 chr9 24891702 24891879 -99184293 + ERVL-int LTR ERVL 2794 2984 -2773 5 774 323 319 34 6 chr9 24891940 24892082 -99184090 + ERVL-int LTR ERVL 2994 3170 -2544 5 774 378 0 0 0 chr9 24892453 24892495 -99183677 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 774 228 318 9 43 chr9 24892915 24893030 -99183142 + CT-rich Low_complexity Low_complexity 1 111 0 5 774 232 278 0 0 chr9 24892977 24893031 -99183141 + C-rich Low_complexity Low_complexity 1 54 0 5 774 204 97 0 0 chr9 24893666 24893697 -99182475 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 774 282 352 162 30 chr9 24893844 24893860 -99182312 - B3 SINE B2 -27 189 175 5 774 574 13 27 0 chr9 24893860 24893935 -99182237 + (GA)n Simple_repeat Simple_repeat 1 77 0 5 774 402 340 70 8 chr9 24893935 24894085 -99182087 - B3A SINE B2 -42 174 1 5 774 1173 35 0 0 chr9 24895119 24895261 -99180911 + (TC)n Simple_repeat Simple_repeat 1 142 0 5 774 625 250 37 65 chr9 24895304 24895518 -99180654 - ID_B1 SINE B4 -16 208 1 5 774 258 105 0 0 chr9 24896207 24896245 -99179927 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 774 1443 229 108 0 chr9 24896248 24896601 -99179571 - Lx6 LINE L1 -191 7269 6879 5 774 524 140 11 0 chr9 24896604 24896697 -99179475 + CT-rich Low_complexity Low_complexity 2 95 0 5 774 324 0 0 0 chr9 24896693 24896729 -99179443 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 774 3507 193 56 50 chr9 24896729 24897568 -99178604 - Lx6 LINE L1 -566 6894 6051 5 774 800 113 37 106 chr9 24898045 24898233 -99177939 - Lx6 LINE L1 -1625 5835 5661 5 774 566 313 113 8 chr9 24900016 24900264 -99175908 - RMER15 LTR ERVL -3 572 299 5 774 238 282 69 97 chr9 24900293 24900438 -99175734 - RMER15 LTR ERVL -431 144 4 5 774 2488 63 3 11 chr9 24901208 24901559 -99174613 + L1Md_F2 LINE L1 6212 6559 -23 5 774 256 347 14 0 chr9 24901592 24901664 -99174508 - Tigger7 DNA MER2_type 0 2491 2419 5 774 291 250 270 0 chr9 24902060 24902208 -99173964 - Tigger7 DNA MER2_type -172 2319 2132 5 774 228 309 158 40 chr9 24902241 24902342 -99173830 - Tigger7 DNA MER2_type -2356 135 23 5 96 2399 212 34 16 chr9 24903271 24903812 -99172360 + Lx7 LINE L1 5523 6068 -1628 5 775 1974 169 120 5 chr9 24903812 24904188 -99171984 - MTC LTR MaLR -2 419 1 5 775 2399 229 71 31 chr9 24904188 24904423 -99171749 + Lx7 LINE L1 6069 6331 -1365 5 775 2216 101 12 3 chr9 24904427 24904746 -99171426 + ORR1A2 LTR MaLR 1 322 -5 5 775 841 230 214 22 chr9 24904749 24905020 -99171152 + Lx7 LINE L1 6331 6653 -1043 5 775 231 36 0 0 chr9 24905556 24905584 -99170588 + (T)n Simple_repeat Simple_repeat 1 28 0 5 775 2296 247 74 12 chr9 24905995 24906725 -99169447 + Lx7 LINE L1 6656 7430 -266 5 775 297 0 0 0 chr9 24906751 24906784 -99169388 + (TATG)n Simple_repeat Simple_repeat 2 34 0 5 775 542 184 193 0 chr9 24906788 24906902 -99169270 - B1_Mur4 SINE Alu -11 139 4 5 775 548 280 180 24 chr9 24907078 24907954 -99168218 + L1MC3 LINE L1 6761 7773 -12 5 775 330 26 0 0 chr9 24908380 24908419 -99167753 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 5 775 353 322 83 40 chr9 24908478 24908805 -99167367 - L1MC4a LINE L1 -7 7875 7535 5 775 977 152 152 0 chr9 24909571 24909762 -99166410 + URR1A DNA MER1_type 1 220 -6 5 775 505 241 86 79 chr9 24909590 24909869 -99166303 - CYRA11_Mm Unknown Y-chromosome -269 348 68 5 775 1867 190 71 11 chr9 24910267 24910645 -99165527 + MTD LTR MaLR 5 405 -14 5 775 23 0 0 0 chr9 24914236 24914259 -99161913 + AT_rich Low_complexity Low_complexity 1 23 0 5 775 1240 41 0 0 chr9 24914386 24914533 -99161639 + B1_Mus1 SINE Alu 2 148 0 5 775 204 40 0 0 chr9 24914533 24914558 -99161614 + (A)n Simple_repeat Simple_repeat 1 25 0 5 775 23 0 0 0 chr9 24914622 24914645 -99161527 + AT_rich Low_complexity Low_complexity 1 23 0 5 775 194 33 67 0 chr9 24915837 24915867 -99160305 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 5 775 574 337 0 20 chr9 24915897 24916094 -99160078 + ID_B1 SINE B4 31 223 -1 5 775 387 105 0 0 chr9 24916657 24916714 -99159458 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 775 3716 52 0 0 chr9 24917274 24917721 -99158451 + L1_Mus1 LINE L1 6121 6567 0 5 775 22 0 0 0 chr9 24918707 24918729 -99157443 + AT_rich Low_complexity Low_complexity 1 22 0 5 775 196 259 0 53 chr9 24918871 24918928 -99157244 + MIRm SINE MIR 97 150 -126 5 775 1078 113 0 0 chr9 24919016 24919167 -99157005 + B2_Mm1t SINE B2 37 187 -6 5 775 595 216 145 8 chr9 24919165 24919438 -99156734 + ORR1E LTR MaLR 20 369 -10 5 775 1440 219 129 16 chr9 24919508 24919957 -99156215 + Lx7 LINE L1 6760 7259 -437 5 775 1066 61 0 0 chr9 24919982 24920114 -99156058 - B1_Mus1 SINE Alu -15 133 2 6 775 310 241 151 81 chr9 24920150 24920534 -99155638 + L1M2 LINE L1 3131 3564 -2579 6 775 4115 157 101 29 chr9 24920548 24921443 -99154729 + RLTR25B LTR ERVK 1 1103 0 6 775 407 306 47 24 chr9 24921444 24921655 -99154517 + L1M2 LINE L1 3573 3788 -2355 6 775 3783 281 65 18 chr9 24921653 24923621 -99152551 + Lx8 LINE L1 3900 5971 -1673 6 775 1625 239 78 16 chr9 24923833 24924258 -99151914 + Lx8 LINE L1 6341 6791 -682 6 775 2072 165 59 0 chr9 24924258 24924615 -99151557 + ORR1B1 LTR MaLR 1 378 -16 6 775 2525 147 26 0 chr9 24924626 24925013 -99151159 + RLTR17 LTR ERVK 202 598 -94 6 775 1064 93 0 6 chr9 24925013 24925175 -99150997 - Lx3A LINE L1 -1139 5842 5682 6 775 695 206 18 70 chr9 24925180 24925455 -99150717 + RMER3D-int LTR ERVK 630 851 -1991 6 775 7000 172 58 58 chr9 24925457 24927048 -99149124 + RMER3D-int LTR ERVK 432 2552 -290 6 775 529 78 33 0 chr9 24927048 24927138 -99149034 - L1Md_F2 LINE L1 -12 6570 6478 6 775 7000 170 60 57 chr9 24927138 24927438 -99148734 + RMER3D-int LTR ERVK 2553 2842 0 6 775 2188 150 25 6 chr9 24927438 24927799 -99148373 + RLTR17 LTR ERVK 1 368 -324 6 775 571 237 24 0 chr9 24927826 24927995 -99148177 + GA-rich Low_complexity Low_complexity 3 175 0 6 775 1009 238 204 48 chr9 24928005 24928278 -99147894 + Lx8 LINE L1 6791 7103 -370 6 775 3076 58 8 2 chr9 24928278 24928672 -99147500 - MTA_Mm LTR MaLR 0 396 1 6 775 1009 238 204 48 chr9 24928672 24928985 -99147187 + Lx8 LINE L1 7104 7469 -4 6 775 30 97 0 0 chr9 24929196 24929289 -99146883 + AT_rich Low_complexity Low_complexity 1 93 0 6 775 180 152 0 0 chr9 24929469 24929502 -99146670 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6 775 27 29 0 0 chr9 24930458 24930492 -99145680 + AT_rich Low_complexity Low_complexity 1 34 0 6 775 8270 63 22 0 chr9 24930981 24932111 -99144061 - L1Md_F2 LINE L1 -625 5258 4104 6 775 7916 31 1 1 chr9 24932112 24933404 -99142768 + L1Md_F2 LINE L1 5254 6544 -38 6 775 261 0 0 0 chr9 24933506 24933535 -99142637 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 775 2444 52 129 6 chr9 24933549 24933899 -99142273 - L1Md_F2 LINE L1 0 6582 6190 6 775 308 274 33 67 chr9 24933953 24934043 -99142129 + ID SINE ID 1 87 -137 6 775 22 35 0 0 chr9 24934365 24934394 -99141778 + AT_rich Low_complexity Low_complexity 1 29 0 6 775 605 291 8 9 chr9 24934604 24934765 -99141407 + ID_B1 SINE B4 84 246 -46 6 775 247 296 28 0 chr9 24934841 24934912 -99141260 - ID4 SINE ID -9 74 2 6 775 238 300 71 0 chr9 24936506 24936576 -99139596 + ID4 SINE ID 6 80 -3 6 775 332 209 178 16 chr9 24936597 24936827 -99139345 + L1MC2 LINE L1 6006 6273 -60 6 775 1142 50 7 0 chr9 24937955 24938096 -99138076 + B1_Mus2 SINE Alu 1 142 -5 6 775 28 29 0 0 chr9 24938308 24938343 -99137829 + AT_rich Low_complexity Low_complexity 1 35 0 6 775 1401 105 19 14 chr9 24939079 24939291 -99136881 - URR1A DNA MER1_type 0 226 14 6 775 618 306 152 5 chr9 24939320 24939543 -99136629 + MER21B LTR ERV1 94 349 -514 6 775 305 232 18 100 chr9 24939832 24939942 -99136230 + MER21B LTR ERV1 382 482 -381 6 775 259 256 240 40 chr9 24939944 24940119 -99136053 + MER21B LTR ERV1 624 833 -30 6 775 429 338 22 70 chr9 24940696 24940925 -99135247 - ID_B1 SINE B4 0 224 7 6 775 1361 91 0 5 chr9 24940962 24941149 -99135023 - B2_Mm2 SINE B2 -9 186 1 6 775 273 273 51 36 chr9 24941745 24941882 -99134290 - L1MC4 LINE L1 -1048 6994 6856 6 775 1790 254 120 23 chr9 24942348 24942965 -99133207 + Lx8 LINE L1 6555 7231 -242 6 775 238 287 67 40 chr9 24943053 24943202 -99132970 - L1MC4 LINE L1 -1942 5940 5788 6 775 216 0 0 0 chr9 24943390 24943414 -99132758 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 775 205 311 125 144 chr9 24943430 24943603 -99132569 - L2 LINE L2 -1459 1960 1797 6 775 315 0 0 0 chr9 24943603 24943638 -99132534 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 775 205 311 125 144 chr9 24943638 24943791 -99132381 - L2 LINE L2 -1623 1796 1640 6 775 252 312 0 0 chr9 24943853 24943917 -99132255 + MIR SINE MIR 107 170 -92 6 775 198 118 0 0 chr9 24944483 24944517 -99131655 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 775 472 288 34 0 chr9 24944718 24944836 -99131336 + B4A SINE B4 2 123 -169 6 775 1557 223 84 24 chr9 24944836 24945218 -99130954 - MTD LTR MaLR -14 405 1 6 775 390 213 13 0 chr9 24945255 24945330 -99130842 + B3A SINE B2 40 115 -83 6 775 23 0 0 0 chr9 24945341 24945364 -99130808 + AT_rich Low_complexity Low_complexity 1 23 0 6 775 758 206 14 14 chr9 24945531 24945679 -99130493 + B1_Mur3 SINE Alu 1 148 -1 6 775 345 318 123 53 chr9 24946057 24946472 -99129700 + L2b LINE L2 2380 2823 -596 6 775 188 341 115 95 chr9 24946733 24946884 -99129288 + L2b LINE L2 3123 3272 -103 6 775 551 13 12 25 chr9 24946884 24946964 -99129208 + L1Md_F3 LINE L1 6506 6584 0 6 775 188 341 115 95 chr9 24946964 24947055 -99129117 + L2b LINE L2 3273 3370 -5 6 775 1572 275 126 13 chr9 24947297 24947995 -99128177 + L1MB7 LINE L1 5402 6182 -2 6 775 200 79 53 0 chr9 24948870 24948908 -99127264 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 775 346 310 23 45 chr9 24949000 24949132 -99127040 - B4A SINE B4 -104 188 60 6 775 276 224 184 0 chr9 24949310 24949386 -99126786 + B3 SINE B2 118 207 -9 6 775 309 300 0 0 chr9 24949490 24949570 -99126602 + (TATG)n Simple_repeat Simple_repeat 2 81 0 6 775 1153 205 5 28 chr9 24950758 24950969 -99125203 - B3 SINE B2 -9 207 2 6 775 297 371 108 10 chr9 24951106 24951310 -99124862 + MIRb SINE MIR 5 228 -40 6 775 241 240 0 20 chr9 24952790 24952841 -99123331 + polypurine Low_complexity Low_complexity 3 52 0 6 775 459 319 8 0 chr9 24952848 24952967 -99123205 + PB1 SINE Alu 1 120 -7 6 775 283 318 23 12 chr9 24953641 24953727 -99122445 - ID_B1 SINE B4 -33 191 105 6 775 25 31 0 0 chr9 24956077 24956109 -99120063 + GC_rich Low_complexity Low_complexity 1 32 0 6 775 21 36 0 0 chr9 24956246 24956274 -99119898 + GC_rich Low_complexity Low_complexity 1 28 0 6 775 203 0 0 36 chr9 24957013 24957041 -99119131 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 775 910 123 228 6 chr9 24957132 24957312 -99118860 + URR1A DNA MER1_type 1 220 -6 6 775 27 29 0 0 chr9 24958475 24958509 -99117663 + AT_rich Low_complexity Low_complexity 1 34 0 6 775 220 354 10 59 chr9 24959050 24959152 -99117020 + B4A SINE B4 82 178 -114 6 775 458 283 0 19 chr9 24959062 24959169 -99117003 + PB1 SINE Alu 10 114 -13 6 775 1956 131 3 75 chr9 24959169 24959515 -99116657 + ORR1A4 LTR MaLR 1 321 -8 6 775 249 222 0 0 chr9 24959526 24959580 -99116592 + A-rich Low_complexity Low_complexity 1 54 0 6 775 446 231 0 0 chr9 24959805 24959883 -99116289 - ID4_ SINE ID -1 82 5 6 775 691 344 66 62 chr9 24960019 24960474 -99115698 - MLT1F LTR MaLR -88 460 4 6 775 396 261 151 8 chr9 24960964 24961129 -99115043 + LTR41 LTR ERVL 18 204 -554 6 775 693 235 102 21 chr9 24961135 24961322 -99114850 - B3 SINE B2 -8 208 7 6 775 500 337 11 11 chr9 24961648 24961837 -99114335 + LTR41 LTR ERVL 580 768 0 6 775 241 278 70 100 chr9 24962207 24962307 -99113865 - PB1D10 SINE Alu -15 102 6 6 775 295 234 104 21 chr9 24962640 24962736 -99113436 + ERVL-E-int LTR ERVL 1285 1388 -4279 6 775 181 277 0 60 chr9 24962900 24962950 -99113222 - L2c LINE L2 -69 3318 3272 6 775 22 0 0 0 chr9 24963057 24963079 -99113093 + AT_rich Low_complexity Low_complexity 1 22 0 6 775 294 247 0 72 chr9 24963322 24963405 -99112767 - B1F1 SINE Alu 0 149 73 6 775 496 255 34 54 chr9 24963521 24963670 -99112502 + B1F2 SINE Alu 4 149 0 6 775 673 249 94 6 chr9 24964575 24964752 -99111420 + B3A SINE B2 6 184 -11 6 775 886 194 274 13 chr9 24965203 24965647 -99110525 - RMER4B LTR ERVK -9 576 17 6 775 525 263 0 17 chr9 24965887 24966007 -99110165 - PB1D7 SINE Alu -2 118 1 6 775 390 261 0 32 chr9 24966262 24966357 -99109815 + PB1D10 SINE Alu 26 117 0 6 775 275 237 68 0 chr9 24966366 24966425 -99109747 + ID4 SINE ID 2 64 -19 6 775 254 0 83 0 chr9 24967110 24967146 -99109026 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 775 385 288 79 8 chr9 24967158 24967284 -99108888 - RSINE1 SINE B4 -28 137 3 6 775 1730 198 105 112 chr9 24967306 24967474 -99108698 + RLTR20A LTR ERVK 1 152 -389 6 775 5382 69 0 19 chr9 24967474 24968139 -99108033 - L1_Mus1 LINE L1 0 6567 5916 6 775 1730 198 105 112 chr9 24968139 24968421 -99107751 + RLTR20A LTR ERVK 153 450 -91 6 775 483 18 0 0 chr9 24968421 24968477 -99107695 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 775 1730 198 105 112 chr9 24968477 24968570 -99107602 + RLTR20A LTR ERVK 451 540 -1 6 775 273 234 13 25 chr9 24968708 24968787 -99107385 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 6 775 342 248 14 13 chr9 24968789 24968870 -99107302 - B4 SINE B4 -2 290 216 6 775 449 287 36 114 chr9 24968878 24968946 -99107226 - B3 SINE B2 0 216 164 6 775 237 33 0 0 chr9 24968946 24968976 -99107196 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 775 449 287 36 114 chr9 24968976 24969100 -99107072 - B3 SINE B2 -53 163 39 6 775 394 244 62 39 chr9 24969170 24969298 -99106874 - B4 SINE B4 -159 133 3 6 775 38 61 0 0 chr9 24969358 24969424 -99106748 + AT_rich Low_complexity Low_complexity 1 66 0 6 775 12856 50 2 1 chr9 24969519 24971779 -99104393 - L1Md_F2 LINE L1 0 6582 4323 6 775 2131 72 0 0 chr9 24971779 24972058 -99104114 + L1Md_F2 LINE L1 4064 4342 -1541 6 775 835 213 22 94 chr9 24972262 24972485 -99103687 - B3 SINE B2 -5 211 5 6 775 204 67 0 0 chr9 24972905 24972935 -99103237 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 6 775 227 333 73 12 chr9 24974031 24974043 -99102129 - ID SINE ID -137 87 1 6 775 266 254 0 35 chr9 24974043 24974100 -99102072 - tRNA-Ala-GCY_ tRNA tRNA -7 68 14 6 775 262 265 86 29 chr9 24974100 24974113 -99102059 - ID4_ SINE ID -9 74 1 6 775 362 283 38 57 chr9 24974932 24975037 -99101135 + B4 SINE B4 33 135 -157 6 775 693 215 0 7 chr9 24975742 24975878 -99100294 + B1_Mur1 SINE Alu 9 143 -6 6 775 617 0 14 0 chr9 24975894 24975967 -99100205 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 775 401 325 94 0 chr9 24976189 24976306 -99099866 + ID_B1 SINE B4 84 211 -13 6 775 282 315 0 0 chr9 24976334 24976407 -99099765 + ID4_ SINE ID 9 81 -2 6 775 547 310 60 34 chr9 24978256 24978523 -99097649 - B4A SINE B4 -18 274 1 6 775 198 0 0 0 chr9 24978566 24978588 -99097584 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 775 758 221 20 7 chr9 24978590 24978736 -99097436 - B1F1 SINE Alu 0 149 2 7 775 21 36 0 0 chr9 24978856 24978884 -99097288 + AT_rich Low_complexity Low_complexity 1 28 0 7 775 350 243 55 55 chr9 24980500 24980609 -99095563 - PB1D10 SINE Alu -8 109 1 7 775 711 210 0 34 chr9 24980766 24980914 -99095258 - ID_B1 SINE B4 0 224 82 7 775 324 237 58 1 chr9 24981984 24982112 -99094060 + L1MD2 LINE L1 6107 6357 -2 7 775 275 0 29 0 chr9 24982444 24982479 -99093693 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 7 775 284 222 48 0 chr9 24982631 24982694 -99093478 - PB1D9 SINE Alu -2 118 53 7 775 427 253 104 76 chr9 24982634 24982846 -99093326 - B4A SINE B4 -62 230 1 7 775 1738 205 64 25 chr9 24983374 24983734 -99092438 + ORR1D1 LTR MaLR 1 374 0 7 775 208 0 62 0 chr9 24983743 24983775 -99092397 + (CAA)n Simple_repeat Simple_repeat 2 35 0 7 775 390 272 0 32 chr9 24983786 24983881 -99092291 - ID_B1 SINE B4 -4 220 129 7 775 1355 213 136 41 chr9 24983894 24984232 -99091940 + ORR1D2 LTR MaLR 1 370 0 7 775 662 264 41 36 chr9 24984232 24984428 -99091744 + B3 SINE B2 1 197 -19 7 775 1371 113 16 0 chr9 24984457 24984643 -99091529 + B2_Mm2 SINE B2 3 191 -4 7 775 553 280 86 18 chr9 24985102 24985352 -99090820 - RLTR31A_Mm LTR ERVK 0 584 309 7 775 4206 43 20 6 chr9 24985354 24985850 -99090322 - L1Md_F3 LINE L1 0 6584 6082 7 775 2876 21 0 3 chr9 24985850 24986181 -99089991 + L1Md_F3 LINE L1 5679 6008 -576 7 775 1960 121 29 0 chr9 24986188 24986495 -99089677 - RLTR31A_Mm LTR ERVK -268 316 1 7 775 450 308 125 7 chr9 24986495 24986629 -99089543 - B4 SINE B4 -60 232 82 7 775 1544 298 101 24 chr9 24986638 24987233 -99088939 - Lx8 LINE L1 -2 7471 6831 7 775 504 256 8 16 chr9 24987291 24987414 -99088758 + MTD LTR MaLR 12 133 -286 7 775 1209 288 43 9 chr9 24987422 24987772 -99088400 - Lx8 LINE L1 -633 6840 6479 7 775 247 104 42 0 chr9 24988348 24988396 -99087776 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 775 597 128 24 0 chr9 24988539 24988664 -99087508 + (TG)n Simple_repeat Simple_repeat 1 128 0 7 775 243 329 0 0 chr9 24988877 24988947 -99087225 + GA-rich Low_complexity Low_complexity 1 70 0 7 775 185 362 35 15 chr9 24989404 24989502 -99086670 - MIRb SINE MIR -102 166 60 7 775 1104 74 54 24 chr9 24989642 24989658 -99086514 - B2_Mm2 SINE B2 -23 172 159 7 775 189 0 0 0 chr9 24989658 24989679 -99086493 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 7 775 1104 74 54 24 chr9 24989679 24989829 -99086343 - B2_Mm2 SINE B2 -37 158 1 7 775 499 212 0 42 chr9 24990030 24990148 -99086024 + BC1_Mm scRNA scRNA 3 115 -37 7 775 833 219 84 13 chr9 24990155 24990426 -99085746 + L1MC LINE L1 5309 5598 -735 7 775 250 258 85 137 chr9 24991747 24991900 -99084272 + LTR88a LTR Gypsy 541 685 -131 7 775 630 0 0 0 chr9 24992320 24992390 -99083782 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 7 775 1120 48 0 0 chr9 24992390 24992516 -99083656 - B1_Mus2 SINE Alu -17 130 5 7 775 310 240 39 26 chr9 24992727 24992804 -99083368 - ID4_ SINE ID -3 80 3 7 775 256 182 0 83 chr9 24992891 24992951 -99083221 + ID4_ SINE ID 1 55 -28 7 775 1723 173 62 39 chr9 24993013 24993350 -99082822 - ORR1B2 LTR MaLR -22 345 1 7 775 2053 162 109 3 chr9 24993905 24994264 -99081908 + MTC LTR MaLR 1 397 -24 7 775 924 43 0 0 chr9 24994267 24994382 -99081790 + B1_Mm SINE Alu 17 131 -16 7 775 603 0 0 0 chr9 24994382 24994449 -99081723 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 775 992 217 11 11 chr9 24994459 24994636 -99081536 - B3 SINE B2 -37 179 3 7 775 339 277 39 29 chr9 24995142 24995246 -99080926 + RSINE1 SINE B4 4 108 -57 7 775 300 27 0 0 chr9 24995250 24995287 -99080885 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 775 24 32 0 0 chr9 24995451 24995482 -99080690 + AT_rich Low_complexity Low_complexity 1 31 0 7 775 278 152 339 0 chr9 24996476 24996535 -99079637 + ID4_ SINE ID 2 80 -3 7 775 1108 122 0 13 chr9 24996680 24996830 -99079342 + B1_Mur4 SINE Alu 1 148 -2 7 775 324 309 43 16 chr9 24996903 24997022 -99079150 + PB1 SINE Alu 1 123 -4 7 775 191 215 15 0 chr9 24997195 24997260 -99078912 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 775 1395 266 40 14 chr9 24997800 24998154 -99078018 + MTEb LTR MaLR 4 366 -13 7 775 1039 212 42 24 chr9 24998198 24998242 -99077930 - B3 SINE B2 0 216 173 7 775 3222 20 0 3 chr9 24998242 24998589 -99077583 - ORR1A1 LTR MaLR 0 346 1 7 775 450 0 0 0 chr9 24998589 24998639 -99077533 + (TATG)n Simple_repeat Simple_repeat 4 53 0 7 775 1039 212 42 24 chr9 24998639 24998805 -99077367 - B3 SINE B2 -44 172 2 7 775 192 342 97 44 chr9 24998841 24998954 -99077218 - L2a LINE L2 -31 3395 3277 7 775 23 0 0 0 chr9 24999106 24999129 -99077043 + AT_rich Low_complexity Low_complexity 1 23 0 7 775 2458 180 2 10 chr9 24999135 24999550 -99076622 - Lx5 LINE L1 0 7050 6639 7 775 1232 125 38 11 chr9 24999553 24999739 -99076433 - B2_Mm2 SINE B2 -2 193 3 7 775 998 212 80 24 chr9 24999749 25000000 -99076172 - RLTR12B LTR ERVK -67 461 197 7 775 766 100 226 57 chr9 25000000 25000159 -99076013 - RLTR12B LTR ERVK -332 196 11 1 775 529 278 148 50 chr9 25000326 25000629 -99075543 - RMER15 LTR ERVL -3 572 240 2 775 819 289 96 15 chr9 25000711 25000981 -99075191 - B4 SINE B4 0 292 1 3 775 469 302 29 21 chr9 25001272 25001512 -99074660 + L1_Rod LINE L1 5504 5745 -102 4 775 610 144 24 0 chr9 25001930 25002055 -99074117 - L1_Mus3 LINE L1 -7 6631 6504 5 775 699 62 0 20 chr9 25002055 25002153 -99074019 + L1_Mus2 LINE L1 6337 6432 -134 6 775 201 59 88 0 chr9 25002275 25002309 -99073863 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 7 775 945 233 31 11 chr9 25002502 25002693 -99073479 - B3 SINE B2 -21 195 1 8 775 978 316 14 32 chr9 25002796 25003080 -99073092 + B4 SINE B4 6 284 -8 9 775 378 0 0 0 chr9 25003096 25003138 -99073034 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 775 532 332 134 6 chr9 25003599 25003921 -99072251 - Arthur1B DNA Tip100 -823 402 40 1 775 262 289 0 67 chr9 25004425 25004514 -99071658 - ID2 SINE ID -56 96 14 1 775 222 318 117 9 chr9 25004655 25004766 -99071406 - L2a LINE L2 -10 3416 3294 1 775 737 208 6 56 chr9 25006785 25006963 -99069209 - RCHARR1 DNA MER1_type -331 643 475 1 775 463 293 133 27 chr9 25007017 25007280 -99068892 - B4A SINE B4 0 292 2 1 775 562 185 122 8 chr9 25007310 25007441 -99068731 + B1_Mur3 SINE Alu 2 147 -2 1 775 333 68 0 0 chr9 25007471 25007515 -99068657 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 775 926 232 24 0 chr9 25007517 25007728 -99068444 + B3 SINE B2 1 216 0 1 775 1488 283 68 28 chr9 25007728 25008189 -99067983 - RCHARR1 DNA MER1_type -488 486 3 1 775 457 257 71 0 chr9 25008189 25008322 -99067850 + B4A SINE B4 134 276 -16 1 775 438 274 9 0 chr9 25008346 25008459 -99067713 + MTD LTR MaLR 1 114 -305 2 775 750 130 130 0 chr9 25008497 25008620 -99067552 - B1_Mur3 SINE Alu 0 149 11 2 775 706 221 239 5 chr9 25008621 25008826 -99067346 + MTD LTR MaLR 102 354 -65 2 775 230 272 9 46 chr9 25008826 25008934 -99067238 + L1ME2z LINE L1 6195 6298 -146 2 775 886 122 29 0 chr9 25009052 25009191 -99066981 - B1_Mus1 SINE Alu 0 148 6 2 775 385 207 31 87 chr9 25009086 25009213 -99066959 - MT2B LTR ERVL -337 264 145 2 775 239 274 35 35 chr9 25009619 25009706 -99066466 - PB1D10 SINE Alu 0 117 31 2 775 393 248 47 30 chr9 25010132 25010301 -99065871 + Kanga1 DNA Tc2 1 181 0 2 775 368 314 42 0 chr9 25010480 25010598 -99065574 + L2a LINE L2 3304 3426 0 2 775 558 0 0 0 chr9 25010619 25010681 -99065491 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 775 240 295 0 60 chr9 25010885 25010968 -99065204 + MIRb SINE MIR 87 164 -104 2 775 299 340 61 90 chr9 25011201 25011318 -99064854 - L2a LINE L2 0 3426 3319 3 775 431 232 0 0 chr9 25011318 25011400 -99064772 + ID4 SINE ID 2 83 0 3 775 299 340 61 90 chr9 25011400 25011560 -99064612 - L2a LINE L2 -108 3318 3157 3 775 1207 197 30 127 chr9 25011964 25012210 -99063962 + ORR1C1 LTR MaLR 80 307 -71 3 775 638 164 25 17 chr9 25012210 25012328 -99063844 + PB1D9 SINE Alu 2 120 0 3 775 1207 197 30 127 chr9 25012328 25012412 -99063760 + ORR1C1 LTR MaLR 308 378 0 3 775 185 247 60 121 chr9 25012775 25012858 -99063314 + MIRm SINE MIR 29 106 -170 3 775 358 261 27 0 chr9 25013184 25013295 -99062877 - Charlie2a DNA MER1_type 0 2861 2748 3 775 387 273 82 50 chr9 25013270 25013490 -99062682 - Charlie2a DNA MER1_type -1874 987 761 3 775 1769 202 55 14 chr9 25013609 25013956 -99062216 + ORR1D1 LTR MaLR 14 374 0 3 775 269 263 111 40 chr9 25014079 25014178 -99061994 - L1MC4 LINE L1 -331 7711 7606 3 775 253 347 14 0 chr9 25014180 25014252 -99061920 + MER106B DNA MER1_type 1 73 -986 3 775 258 363 74 14 chr9 25014475 25014623 -99061549 + LTR16B1 LTR ERVL 141 297 -183 3 775 271 208 78 0 chr9 25014711 25014788 -99061384 - Charlie2a DNA MER1_type -2701 160 78 3 775 294 341 79 88 chr9 25014825 25015053 -99061119 - MLT2F LTR ERVL -3 660 435 4 775 217 296 190 36 chr9 25015612 25015749 -99060423 + MIRb SINE MIR 111 268 0 4 775 352 297 55 0 chr9 25016464 25016555 -99059617 - B1_Mur3 SINE Alu -51 98 3 4 775 189 0 0 0 chr9 25017504 25017525 -99058647 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 775 592 246 29 0 chr9 25017549 25017687 -99058485 - B1F SINE Alu -7 142 1 4 775 288 0 0 0 chr9 25017756 25017788 -99058384 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 775 264 30 0 0 chr9 25017788 25017820 -99058352 + (TCC)n Simple_repeat Simple_repeat 3 35 0 4 775 360 0 0 0 chr9 25018251 25018291 -99057881 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 775 304 173 16 0 chr9 25018315 25018376 -99057796 - B1F SINE Alu -7 142 61 4 775 243 282 59 0 chr9 25018597 25018682 -99057490 + ORR1E LTR MaLR 270 359 0 4 775 299 277 42 21 chr9 25019205 25019301 -99056871 - MIR SINE MIR -70 192 95 5 775 330 378 0 0 chr9 25019345 25019435 -99056737 + PB1D10 SINE Alu 2 91 -26 5 775 204 207 33 33 chr9 25019530 25019620 -99056552 + CT-rich Low_complexity Low_complexity 5 94 0 5 775 4055 73 2 10 chr9 25021162 25021742 -99054430 - L1_Mus1 LINE L1 -343 5540 4966 5 775 7202 70 6 0 chr9 25021742 25022760 -99053412 + L1_Mus1 LINE L1 5544 6567 0 5 775 254 162 54 0 chr9 25025515 25025589 -99050583 + CT-rich Low_complexity Low_complexity 2 79 0 5 775 707 269 22 52 chr9 25025880 25026114 -99050058 + ORR1D2 LTR MaLR 54 370 0 5 775 797 189 51 11 chr9 25027716 25027893 -99048279 + B2_Mm2 SINE B2 1 184 -11 5 775 234 81 0 0 chr9 25028126 25028163 -99048009 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 5 775 497 299 40 17 chr9 25028283 25028460 -99047712 + B3A SINE B2 2 182 -16 5 775 332 362 105 31 chr9 25028516 25028707 -99047465 - MER115 DNA Tip100 -485 208 4 5 775 380 303 0 0 chr9 25028707 25028778 -99047394 - ID_B1 SINE B4 -55 169 99 6 775 599 303 44 19 chr9 25028832 25028990 -99047182 + B3A SINE B2 7 168 -30 6 775 21 0 0 0 chr9 25028990 25029011 -99047161 + AT_rich Low_complexity Low_complexity 1 21 0 6 775 259 246 40 40 chr9 25029687 25029763 -99046409 - MIRb SINE MIR 0 268 193 6 775 268 229 31 39 chr9 25030026 25030049 -99046123 + ORR1B1-int LTR MaLR 629 650 -859 6 775 784 111 89 0 chr9 25030049 25030184 -99045988 + B1_Mm SINE Alu 1 147 0 6 775 242 322 38 113 chr9 25030200 25030333 -99045839 - L2c LINE L2 -3 3384 3262 6 775 23 0 0 0 chr9 25032231 25032254 -99043918 + AT_rich Low_complexity Low_complexity 1 23 0 6 775 212 100 25 0 chr9 25032388 25032428 -99043744 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 6 775 230 180 0 16 chr9 25032749 25032811 -99043361 + CT-rich Low_complexity Low_complexity 2 62 0 6 775 564 297 51 56 chr9 25033688 25033902 -99042270 + B3 SINE B2 3 215 -1 7 775 1166 107 62 6 chr9 25033902 25034081 -99042091 + B2_Mm2 SINE B2 2 190 -5 7 776 351 290 65 0 chr9 25035403 25035496 -99040676 - PB1D7 SINE Alu -21 99 1 7 776 261 0 0 0 chr9 25036401 25036430 -99039742 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 776 573 15 0 0 chr9 25036430 25036495 -99039677 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 776 2339 285 46 19 chr9 25036784 25037643 -99038529 - Lx8 LINE L1 -103 7370 6604 7 776 226 275 162 0 chr9 25037680 25037760 -99038412 - Lx8 LINE L1 -1013 6460 6368 7 776 30649 36 3 1 chr9 25037791 25042874 -99033298 + L1Md_Gf LINE L1 109 5299 -587 7 776 27744 33 1 0 chr9 25042975 25046491 -99029681 + L1Md_T LINE L1 2067 5586 -297 7 776 8977 8 0 0 chr9 25046491 25047487 -99028685 + L1Md_T LINE L1 5587 6582 0 7 776 4410 73 12 7 chr9 25047615 25048196 -99027976 - MT2B2 LTR ERVL 0 584 1 7 776 1172 68 0 13 chr9 25049639 25049789 -99026383 + B1_Mus1 SINE Alu 1 148 0 7 776 207 191 0 0 chr9 25049789 25049836 -99026336 + A-rich Low_complexity Low_complexity 2 48 0 8 776 897 310 39 72 chr9 25050189 25050523 -99025649 + MLT1B LTR MaLR 53 375 -15 8 776 27 29 0 0 chr9 25050713 25050747 -99025425 + AT_rich Low_complexity Low_complexity 1 34 0 8 776 227 183 0 40 chr9 25050906 25050965 -99025207 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 8 776 1178 62 7 0 chr9 25050965 25051111 -99025061 - B1_Mus2 SINE Alu 0 147 1 8 776 227 183 0 40 chr9 25051111 25051125 -99025047 + (TTTA)n Simple_repeat Simple_repeat 2 15 0 8 776 219 139 0 0 chr9 25051819 25051855 -99024317 + (T)n Simple_repeat Simple_repeat 1 36 0 8 776 614 13 13 0 chr9 25052201 25052276 -99023896 + (GA)n Simple_repeat Simple_repeat 2 77 0 8 776 186 290 54 68 chr9 25052957 25053031 -99023141 + L3 LINE CR1 4410 4482 -7 8 776 711 278 112 112 chr9 25053400 25053482 -99022690 + B4A SINE B4 17 90 -202 8 776 709 185 77 0 chr9 25053482 25053612 -99022560 + B1_Mur4 SINE Alu 5 144 -6 9 776 711 278 112 112 chr9 25053612 25053805 -99022367 + B4A SINE B4 91 292 0 8 776 284 127 18 0 chr9 25053824 25053879 -99022293 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 776 219 240 0 20 chr9 25055205 25055256 -99020916 + GA-rich Low_complexity Low_complexity 6 55 0 9 776 390 259 35 0 chr9 25055269 25055354 -99020818 + PB1D10 SINE Alu 4 91 -26 9 776 253 318 68 99 chr9 25055354 25055461 -99020711 + B4A SINE B4 89 274 -18 9 776 458 252 84 97 chr9 25055476 25055775 -99020397 - Charlie1 DNA MER1_type -55 2726 2432 9 776 187 334 183 78 chr9 25055990 25056334 -99019838 - L2c LINE L2 -10 3365 2986 9 776 263 293 151 13 chr9 25056572 25056724 -99019448 - L2c LINE L2 -856 2563 2391 9 776 284 317 98 10 chr9 25056819 25056921 -99019251 + RSINE1 SINE B4 10 120 -45 9 776 962 262 15 0 chr9 25056987 25057189 -99018983 + B3 SINE B2 6 210 -6 9 776 198 191 0 0 chr9 25057196 25057238 -99018934 + (TA)n Simple_repeat Simple_repeat 1 42 0 9 776 273 320 75 62 chr9 25057314 25057554 -99018618 - L2c LINE L2 -1233 2186 1944 9 776 338 159 43 0 chr9 25058383 25058452 -99017720 - B1_Mus2 SINE Alu -21 126 55 1 776 180 111 0 0 chr9 25059863 25059890 -99016282 + (A)n Simple_repeat Simple_repeat 1 27 0 1 776 40 21 0 0 chr9 25060407 25060454 -99015718 + GC_rich Low_complexity Low_complexity 1 47 0 1 776 25 0 0 0 chr9 25061560 25061585 -99014587 + AT_rich Low_complexity Low_complexity 1 25 0 1 776 485 174 10 0 chr9 25062357 25062455 -99013717 + (TATG)n Simple_repeat Simple_repeat 3 101 0 1 776 1044 240 18 5 chr9 25062854 25063072 -99013100 - Lx9 LINE L1 -995 6649 6429 1 776 937 123 32 53 chr9 25064306 25064495 -99011677 - B2_Mm2 SINE B2 -9 186 2 1 776 719 222 0 8 chr9 25064528 25064655 -99011517 - B3 SINE B2 -86 130 5 1 776 22 80 0 0 chr9 25064786 25064836 -99011336 + AT_rich Low_complexity Low_complexity 1 50 0 1 776 200 320 51 39 chr9 25065120 25065198 -99010974 + MER5B DNA MER1_type 96 174 -4 1 776 33 25 0 0 chr9 25065412 25065452 -99010720 + AT_rich Low_complexity Low_complexity 1 40 0 1 776 657 156 175 11 chr9 25065790 25065955 -99010217 - Lx8 LINE L1 -747 6897 6644 1 776 2071 85 110 3 chr9 25066497 25066815 -99009357 - L1_Mus3 LINE L1 -4 6634 6283 1 776 918 49 8 8 chr9 25066823 25066947 -99009225 - B1_Mus1 SINE Alu -23 125 2 1 776 557 219 83 0 chr9 25066965 25067134 -99009038 + MER33 DNA MER1_type 136 318 -6 1 776 195 295 33 0 chr9 25067742 25067803 -99008369 - L3 LINE CR1 -860 3629 3567 1 776 1691 176 73 3 chr9 25067997 25068367 -99007805 + Lx2A1 LINE L1 6606 7001 -7 1 776 22 70 0 0 chr9 25068544 25068587 -99007585 + AT_rich Low_complexity Low_complexity 1 43 0 1 776 328 223 51 16 chr9 25068589 25068701 -99007471 - B4A SINE B4 -38 127 6 1 776 281 310 8 33 chr9 25069057 25069177 -99006995 - PB1 SINE Alu -6 121 5 1 776 21 57 0 0 chr9 25069612 25069647 -99006525 + AT_rich Low_complexity Low_complexity 1 35 0 1 776 1233 98 12 0 chr9 25069966 25070139 -99006033 + B2_Mm1t SINE B2 2 176 -17 1 776 303 115 82 0 chr9 25070193 25070254 -99005918 + B2_Mm1a SINE B2 127 192 -1 1 776 664 344 157 37 chr9 25070410 25070869 -99005303 + L2 LINE L2 2561 3074 -345 1 776 28 29 0 0 chr9 25071571 25071606 -99004566 + AT_rich Low_complexity Low_complexity 1 35 0 1 776 1155 56 0 0 chr9 25073154 25073297 -99002875 + B1_Mm SINE Alu 1 143 -4 1 776 456 91 0 0 chr9 25073298 25073364 -99002808 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 1 776 21 36 0 0 chr9 25073364 25073392 -99002780 + AT_rich Low_complexity Low_complexity 1 28 0 1 776 1501 200 102 26 chr9 25074273 25074617 -99001555 + ORR1D2 LTR MaLR 1 370 0 1 776 1975 149 81 22 chr9 25074828 25075198 -99000974 + ORR1B1 LTR MaLR 1 392 -2 1 776 999 234 161 8 chr9 25075273 25075562 -99000610 + ORR1D2 LTR MaLR 3 360 -14 1 776 843 107 8 0 chr9 25075566 25075687 -99000485 - B1_Mus2 SINE Alu -24 123 2 1 776 561 232 82 111 chr9 25075687 25075858 -99000314 - MTD LTR MaLR -212 207 43 1 776 1341 217 122 62 chr9 25076152 25076204 -98999968 - MTD LTR MaLR -1 418 370 1 776 266 0 29 0 chr9 25076204 25076238 -98999934 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1 776 1341 217 122 62 chr9 25076238 25076569 -98999603 - MTD LTR MaLR -50 369 12 1 776 351 0 0 0 chr9 25076897 25076936 -98999236 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1 776 381 22 0 0 chr9 25077448 25077494 -98998678 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 776 249 57 0 0 chr9 25077496 25077531 -98998641 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1 776 445 331 64 30 chr9 25077548 25077926 -98998246 - MT2A LTR ERVL -31 523 3 1 776 283 23 0 43 chr9 25078186 25078232 -98997940 + (TTAA)n Simple_repeat Simple_repeat 3 46 0 1 776 3773 67 4 51 chr9 25078232 25078780 -98997392 + L1_Mus2 LINE L1 6045 6566 0 1 776 408 137 250 10 chr9 25078801 25078897 -98997275 + PB1D9 SINE Alu 2 120 0 1 776 198 0 0 0 chr9 25079126 25079148 -98997024 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 776 2206 189 11 54 chr9 25079462 25079922 -98996250 - Lx5 LINE L1 0 7050 6611 1 776 1208 41 7 0 chr9 25079983 25080130 -98996042 - B1_Mus1 SINE Alu 0 148 1 1 776 975 260 128 63 chr9 25080547 25081506 -98994666 - L1MCa LINE L1 -511 5997 4968 1 776 439 180 69 23 chr9 25081503 25081634 -98994538 - L1MCa LINE L1 -4542 1966 1830 1 776 806 144 0 22 chr9 25081660 25081795 -98994377 + B2_Mm2 SINE B2 2 133 -62 1 776 536 270 100 81 chr9 25081852 25082211 -98993961 - L1M3 LINE L1 -973 5167 4802 1 776 408 291 131 71 chr9 25083154 25083649 -98992523 - L1M3 LINE L1 -3427 2719 2195 1 776 676 300 23 17 chr9 25083995 25084168 -98992004 - B3A SINE B2 -24 174 1 1 776 1062 221 119 95 chr9 25084428 25084797 -98991375 - MTE2b LTR MaLR 0 379 2 1 776 219 139 0 0 chr9 25085552 25085588 -98990584 + (T)n Simple_repeat Simple_repeat 1 36 0 1 776 7597 63 5 9 chr9 25085593 25086730 -98989442 - L1_Mus2 LINE L1 0 6566 5435 1 776 260 297 89 0 chr9 25086730 25086831 -98989341 - MER3 DNA MER1_type -76 133 24 1 776 185 292 45 30 chr9 25086954 25087021 -98989151 - MER5A DNA MER1_type -80 109 42 1 776 1077 146 167 0 chr9 25087045 25087237 -98988935 - URR1A DNA MER1_type -2 224 1 1 776 444 302 387 25 chr9 25087252 25087490 -98988682 + MER33 DNA MER1_type 1 324 0 1 776 359 327 38 57 chr9 25088038 25088249 -98987923 - MIR SINE MIR 0 262 56 1 776 795 329 42 27 chr9 25088442 25088704 -98987468 - B4 SINE B4 -25 267 2 1 776 22 0 0 0 chr9 25089120 25089142 -98987030 + AT_rich Low_complexity Low_complexity 1 22 0 1 776 215 79 26 0 chr9 25089659 25089697 -98986475 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 776 1098 90 89 11 chr9 25091555 25091715 -98984457 + B2_Mm1t SINE B2 1 160 -33 1 776 387 0 0 0 chr9 25091715 25091758 -98984414 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 776 1098 90 89 11 chr9 25091758 25091776 -98984396 + B2_Mm1t SINE B2 161 191 -2 1 776 493 283 138 26 chr9 25092349 25092538 -98983634 - B3 SINE B2 -6 210 1 1 776 412 292 49 35 chr9 25093134 25093276 -98982896 - MER3 DNA MER1_type -65 144 1 1 776 346 328 25 25 chr9 25093971 25094093 -98982079 + B4A SINE B4 166 287 -5 1 776 610 206 8 60 chr9 25094408 25094542 -98981630 + B1_Mur1 SINE Alu 23 149 0 1 776 200 229 0 20 chr9 25094799 25094848 -98981324 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 1 776 634 264 139 25 chr9 25095364 25095609 -98980563 - B4A SINE B4 -18 274 2 1 776 972 88 22 0 chr9 25096217 25096353 -98979819 - B1_Mus1 SINE Alu -9 139 1 1 776 438 301 11 68 chr9 25097176 25097320 -98978852 + PB1D10 SINE Alu 1 150 0 1 776 761 181 0 0 chr9 25097503 25097630 -98978542 - B1_Mur4 SINE Alu -21 129 3 1 776 243 279 198 0 chr9 25098442 25098553 -98977619 + ID_B1 SINE B4 82 214 -10 1 776 455 0 0 18 chr9 25099086 25099142 -98977030 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 1 776 1141 58 26 6 chr9 25099142 25099298 -98976874 - B2_Mm1t SINE B2 -33 160 2 1 776 204 321 36 24 chr9 25099570 25099653 -98976519 - L2c LINE L2 -10 3377 3294 1 776 1326 71 16 16 chr9 25100499 25100685 -98975487 + B2_Mm2 SINE B2 2 187 -8 1 776 281 339 0 31 chr9 25101974 25102102 -98974070 + CT-rich Low_complexity Low_complexity 3 126 0 1 776 181 326 92 64 chr9 25102387 25102528 -98973644 - MER5A DNA MER1_type -28 161 17 1 776 634 226 12 110 chr9 25102549 25102713 -98973459 - B1_Mur3 SINE Alu 0 149 2 1 776 305 238 26 129 chr9 25102611 25102727 -98973445 - MT2B LTR ERVL -345 256 153 1 776 523 258 73 0 chr9 25102742 25102866 -98973306 - B1_Mur1 SINE Alu -15 134 2 1 776 449 279 9 0 chr9 25102950 25103061 -98973111 - PB1D10 SINE Alu -5 112 1 1 776 249 57 0 0 chr9 25104433 25104468 -98971704 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 776 492 231 16 41 chr9 25104476 25104598 -98971574 - B1_Mm SINE Alu 0 147 29 1 776 297 267 95 109 chr9 25104598 25104615 -98971557 - ID_B1 SINE B4 0 184 80 1 776 380 86 40 61 chr9 25104846 25104994 -98971178 + (TTATA)n Simple_repeat Simple_repeat 3 147 0 1 776 22 80 0 0 chr9 25105296 25105346 -98970826 + AT_rich Low_complexity Low_complexity 1 50 0 1 776 408 289 119 56 chr9 25106559 25106827 -98969345 + B4A SINE B4 2 286 -6 1 776 783 250 70 0 chr9 25107448 25107648 -98968524 + B3 SINE B2 3 216 0 1 776 1129 291 97 31 chr9 25109462 25110054 -98966118 - Lx8 LINE L1 -871 6602 5983 1 776 2146 169 34 7 chr9 25110539 25110949 -98965223 - MTC LTR MaLR 0 421 1 1 776 30 69 0 0 chr9 25111510 25111568 -98964604 + AT_rich Low_complexity Low_complexity 1 58 0 1 776 466 198 35 0 chr9 25112311 25112397 -98963775 - RSINE1 SINE B4 -38 127 39 1 776 21 0 0 0 chr9 25112903 25112924 -98963248 + AT_rich Low_complexity Low_complexity 1 21 0 1 776 240 358 21 80 chr9 25113060 25113248 -98962924 - MER5A DNA MER1_type 0 178 2 1 776 802 255 116 7 chr9 25113968 25114245 -98961927 - ORR1D1 LTR MaLR -55 315 13 1 776 22 35 0 0 chr9 25115357 25115386 -98960786 + AT_rich Low_complexity Low_complexity 1 29 0 1 776 23 0 0 0 chr9 25115726 25115749 -98960423 + AT_rich Low_complexity Low_complexity 1 23 0 1 776 183 100 0 0 chr9 25116392 25116422 -98959750 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 776 183 80 0 0 chr9 25116425 25116450 -98959722 + (T)n Simple_repeat Simple_repeat 1 25 0 1 776 307 250 28 57 chr9 25116865 25116971 -98959201 + PB1D9 SINE Alu 3 105 -15 2 776 440 306 64 37 chr9 25118469 25118656 -98957516 - B3A SINE B2 -5 193 2 2 776 234 0 0 0 chr9 25118959 25118985 -98957187 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 776 483 18 0 0 chr9 25118985 25119040 -98957132 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 776 234 393 8 49 chr9 25120748 25120871 -98955301 + B4A SINE B4 25 142 -150 2 776 333 274 0 14 chr9 25120911 25120985 -98955187 + RSINE1 SINE B4 82 154 -11 2 776 261 238 230 7 chr9 25121109 25121261 -98954911 - RMER5 LTR ERV1 -300 234 49 2 776 522 159 232 37 chr9 25121598 25121720 -98954452 + PB1D9 SINE Alu 3 129 -19 2 776 316 264 56 7 chr9 25122081 25122226 -98953946 - MLT1F1 LTR MaLR -144 425 240 2 776 302 230 39 29 chr9 25122273 25122376 -98953796 + L1MB7 LINE L1 5796 5899 -285 2 776 2263 186 112 44 chr9 25122538 25123082 -98953090 + RMER19C LTR ERVK 3 583 -28 2 776 4243 227 41 110 chr9 25123187 25123800 -98952372 + RMER1C Other Other 70 565 -777 2 776 2262 242 123 63 chr9 25123800 25124611 -98951561 - RMER13A LTR ERVK 0 860 1 2 776 4243 227 41 110 chr9 25124611 25125229 -98950943 + RMER1C Other Other 566 1200 -142 2 776 974 107 6 0 chr9 25125229 25125388 -98950784 + (TC)n Simple_repeat Simple_repeat 1 160 0 2 776 4243 227 41 110 chr9 25125388 25125523 -98950649 + RMER1C Other Other 1201 1341 -1 2 776 555 56 0 0 chr9 25125677 25125748 -98950424 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 776 408 55 0 0 chr9 25125768 25125823 -98950349 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 776 191 36 0 35 chr9 25126835 25126864 -98949308 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 776 632 169 159 16 chr9 25126864 25126979 -98949193 - B1_Mus1 SINE Alu -12 136 3 2 776 645 231 68 47 chr9 25127001 25127192 -98948980 - B3A SINE B2 -3 195 1 2 776 1134 45 0 0 chr9 25127495 25127628 -98948544 + B1_Mm SINE Alu 2 134 -13 2 776 336 48 0 0 chr9 25127629 25127671 -98948501 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 2 776 403 207 69 0 chr9 25128477 25128564 -98947608 + PB1D10 SINE Alu 2 94 -23 2 776 23 54 0 0 chr9 25129596 25129633 -98946539 + AT_rich Low_complexity Low_complexity 1 37 0 2 776 339 224 0 0 chr9 25130523 25130599 -98945573 + PB1D10 SINE Alu 40 115 -2 2 776 4139 113 39 24 chr9 25130740 25131374 -98944798 - L1VL2 LINE L1 -5537 798 155 2 776 1300 197 141 16 chr9 25131375 25131695 -98944477 + ORR1D1 LTR MaLR 15 374 0 2 776 180 0 0 0 chr9 25132254 25132274 -98943898 + (T)n Simple_repeat Simple_repeat 1 20 0 2 776 1117 82 0 0 chr9 25132274 25132421 -98943751 - B1_Mus2 SINE Alu 0 147 1 2 776 365 321 28 0 chr9 25132455 25132561 -98943611 - PB1D10 SINE Alu -8 109 1 2 776 707 207 112 123 chr9 25132823 25133010 -98943162 + B3A SINE B2 1 185 -10 2 776 657 139 17 25 chr9 25133082 25133200 -98942972 + B1_Mur3 SINE Alu 33 149 0 2 776 244 48 48 0 chr9 25133209 25133251 -98942921 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 776 842 257 129 27 chr9 25133522 25133854 -98942318 - MTD LTR MaLR -13 366 42 2 776 265 236 293 0 chr9 25133885 25134042 -98942130 + L1MB8 LINE L1 4668 4870 -1276 2 776 523 286 52 14 chr9 25134188 25134365 -98941807 - B3A SINE B2 -22 176 7 2 776 303 301 123 10 chr9 25134373 25134568 -98941604 + L1MB8 LINE L1 5628 5844 -340 2 776 251 222 209 18 chr9 25134733 25134843 -98941329 + L1MB8 LINE L1 6048 6178 0 2 776 945 239 48 55 chr9 25134879 25135171 -98941001 + B4A SINE B4 3 292 0 2 776 200 133 106 118 chr9 25136620 25136705 -98939467 + MIRc SINE MIR 162 245 -23 2 776 702 305 21 59 chr9 25137782 25138071 -98938101 - B4A SINE B4 0 292 15 2 776 21 0 0 0 chr9 25138490 25138511 -98937661 + AT_rich Low_complexity Low_complexity 1 21 0 2 776 327 136 0 0 chr9 25139313 25139372 -98936800 + (TCC)n Simple_repeat Simple_repeat 2 60 0 2 776 284 326 31 0 chr9 25139529 25139627 -98936545 - L1MD3 LINE L1 -733 7262 7162 2 776 335 150 0 0 chr9 25139750 25139810 -98936362 - ORR1C2 LTR MaLR -7 377 318 2 776 1883 232 78 15 chr9 25139800 25140264 -98935908 - RMER15 LTR ERVL -56 519 27 2 776 411 225 87 48 chr9 25140484 25140610 -98935562 - RSINE1 SINE B4 -33 132 2 2 776 239 173 19 0 chr9 25140614 25140666 -98935506 + T-rich Low_complexity Low_complexity 3 55 0 2 776 255 299 0 0 chr9 25140673 25140740 -98935432 - tRNA-Ala-GCA tRNA tRNA -5 70 4 2 776 260 277 85 30 chr9 25140806 25141007 -98935165 - L1MC5 LINE L1 -425 7536 7325 2 776 1753 179 52 0 chr9 25141168 25141515 -98934657 + ORR1D1 LTR MaLR 2 366 -8 2 776 213 108 0 0 chr9 25141644 25141681 -98934491 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 2 776 240 206 0 6 chr9 25143284 25143338 -98932834 + B1F SINE Alu 70 142 -7 2 776 939 198 45 10 chr9 25143359 25143558 -98932614 + ID_B1 SINE B4 11 216 -8 2 776 331 20 59 0 chr9 25143561 25143612 -98932560 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 776 381 283 0 0 chr9 25144622 25144837 -98931335 + (CA)n Simple_repeat Simple_repeat 1 215 0 2 776 4202 148 36 15 chr9 25145316 25146038 -98930134 - RMER19A LTR ERVK 0 737 1 2 776 355 359 5 81 chr9 25146171 25146356 -98929816 - B4A SINE B4 -120 172 2 2 776 1393 254 61 17 chr9 25146415 25146879 -98929293 - MTC-int LTR MaLR -435 823 252 2 776 3859 240 118 9 chr9 25146885 25148121 -98928051 - RMER1A Other Other -4 1026 15 2 776 565 236 31 105 chr9 25148476 25148704 -98927468 - MTC-int LTR MaLR -1284 296 50 2 776 446 313 53 0 chr9 25148699 25148830 -98927342 + MTD LTR MaLR 224 361 -58 2 776 261 139 0 0 chr9 25148830 25148873 -98927299 + (T)n Simple_repeat Simple_repeat 1 43 0 2 776 1206 220 134 18 chr9 25149062 25149391 -98926781 - MTD LTR MaLR -51 368 2 2 776 30944 78 76 4 chr9 25149896 25155629 -98920543 - L1Md_F2 LINE L1 -75 6507 358 2 776 1871 197 37 32 chr9 25155644 25156030 -98920142 - Lx5 LINE L1 0 7050 6676 2 776 625 275 113 68 chr9 25156669 25156962 -98919210 - MTD LTR MaLR -32 387 82 2 776 1432 136 95 67 chr9 25157449 25157764 -98918408 + ORR1A3 LTR MaLR 1 324 -2 2 776 2650 72 8 5 chr9 25157718 25158096 -98918076 - MTA_Mm LTR MaLR 0 396 18 2 776 2775 76 87 0 chr9 25158106 25158474 -98917698 + MTB LTR MaLR 1 400 0 2 776 457 18 0 0 chr9 25158474 25158530 -98917642 + ORR1A3 LTR MaLR 271 326 0 2 776 1358 306 118 25 chr9 25159467 25160047 -98916125 - L1MD1 LINE L1 -17 6616 5995 2 776 333 0 0 0 chr9 25160047 25160084 -98916088 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 776 1358 299 121 27 chr9 25160084 25160462 -98915710 - L1MD1 LINE L1 -639 5994 5555 2 776 644 115 10 0 chr9 25160518 25160622 -98915550 + (TCTCCC)n Simple_repeat Simple_repeat 5 109 0 2 776 1241 21 0 0 chr9 25160622 25160763 -98915409 - B1_Mm SINE Alu -6 141 1 2 776 780 260 74 77 chr9 25160883 25161208 -98914964 - MTE2b LTR MaLR -8 371 48 2 776 427 343 89 13 chr9 25161242 25161555 -98914617 - L1MD1 LINE L1 -5473 1160 824 2 776 396 285 149 11 chr9 25161567 25161748 -98914424 - Tigger5 DNA MER2_type -2164 242 37 2 776 188 88 34 34 chr9 25161748 25161807 -98914365 + A-rich Low_complexity Low_complexity 5 63 0 2 776 22 35 0 0 chr9 25162149 25162178 -98913994 + AT_rich Low_complexity Low_complexity 1 29 0 2 776 815 146 0 7 chr9 25162498 25162643 -98913529 + CT-rich Low_complexity Low_complexity 2 145 0 2 776 629 215 0 7 chr9 25162668 25162818 -98913354 + CT-rich Low_complexity Low_complexity 2 150 0 2 776 924 36 0 0 chr9 25162844 25162956 -98913216 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 2 776 482 258 42 30 chr9 25164066 25164234 -98911938 - L1MD3 LINE L1 -19 7976 7807 2 776 345 172 0 15 chr9 25164248 25164313 -98911859 + B2_Mm2 SINE B2 16 79 -116 2 776 224 220 0 20 chr9 25164526 25164577 -98911595 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 776 366 283 28 9 chr9 25164578 25164685 -98911487 - B4A SINE B4 -146 146 38 2 776 458 275 186 0 chr9 25164933 25165100 -98911072 + B3 SINE B2 10 207 -9 2 776 272 158 18 0 chr9 25165270 25165327 -98910845 + CT-rich Low_complexity Low_complexity 2 59 0 2 776 293 325 62 38 chr9 25165386 25165546 -98910626 - RSINE1 SINE B4 0 165 2 2 777 270 273 157 60 chr9 25166163 25166463 -98909709 - L1MB8 LINE L1 -30 6148 5820 2 777 311 213 18 0 chr9 25166477 25166566 -98909606 - L1MB8 LINE L1 -410 5773 5683 2 777 441 0 0 0 chr9 25166620 25166669 -98909503 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 2 777 1530 17 0 0 chr9 25166671 25166848 -98909324 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 2 777 2244 271 52 52 chr9 25166930 25167733 -98908439 - Lx9 LINE L1 -149 7495 6693 2 777 870 244 74 152 chr9 25167738 25168032 -98908140 + MTD LTR MaLR 11 272 -147 2 777 1461 224 65 122 chr9 25168032 25168582 -98907590 + RLTR11A LTR ERVK 1 519 -9 2 777 321 180 21 6 chr9 25168595 25168699 -98907473 + MTD LTR MaLR 290 407 -14 2 777 1014 272 101 13 chr9 25168705 25169034 -98907138 - Lx9 LINE L1 -952 6692 6195 2 777 228 35 0 0 chr9 25169034 25169063 -98907109 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 777 728 304 152 44 chr9 25169063 25169441 -98906731 - Lx9 LINE L1 -1502 6194 5767 2 777 2453 169 89 136 chr9 25169443 25170020 -98906152 + RMER6A LTR ERVK 1 509 -247 2 777 1489 11 6 6 chr9 25170020 25170200 -98905972 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 777 2453 169 89 136 chr9 25170200 25170415 -98905757 + RMER6A LTR ERVK 510 756 0 2 777 536 290 78 6 chr9 25170493 25170755 -98905417 - Lx9 LINE L1 -1537 6107 5785 2 777 1648 238 50 38 chr9 25170755 25171254 -98904918 - RLTR16 LTR ERVK 0 505 1 2 777 541 146 35 30 chr9 25171258 25171412 -98904760 - MYSERV16_I-int LTR ERVK -1155 1171 890 2 777 1006 253 134 9 chr9 25171412 25171738 -98904434 - L1MA8 LINE L1 -453 5838 5399 2 777 1199 197 50 26 chr9 25171736 25172039 -98904133 + L1_Rod LINE L1 5076 5385 -462 2 777 656 65 21 0 chr9 25172047 25172140 -98904032 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 2 777 1136 90 24 0 chr9 25172140 25172307 -98903865 - B2_Mm1a SINE B2 -21 172 2 3 777 5343 18 0 18 chr9 25172315 25172934 -98903238 - L1Md_A LINE L1 0 6582 5975 3 777 548 255 53 20 chr9 25172935 25173087 -98903085 + Lx9 LINE L1 6778 6934 -710 3 777 2218 192 114 17 chr9 25173101 25173511 -98902661 + Lx9 LINE L1 7051 7514 -130 3 777 234 0 0 0 chr9 25173511 25173537 -98902635 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 777 2218 192 114 17 chr9 25173537 25173660 -98902512 + Lx9 LINE L1 7515 7636 -8 3 777 925 162 0 0 chr9 25174118 25174266 -98901906 + B1_Mus1 SINE Alu 1 148 0 3 777 618 135 0 0 chr9 25174276 25174380 -98901792 + (GGGA)n Simple_repeat Simple_repeat 4 107 0 3 777 311 253 55 0 chr9 25174673 25174764 -98901408 + B3A SINE B2 5 100 -98 3 777 1790 120 29 84 chr9 25175000 25175345 -98900827 - ORR1A3 LTR MaLR 0 326 1 3 777 189 0 0 0 chr9 25176248 25176269 -98899903 + (T)n Simple_repeat Simple_repeat 1 21 0 3 777 2073 211 33 72 chr9 25176420 25176991 -98899181 + RMER15 LTR ERVL 27 575 0 3 777 1265 83 0 6 chr9 25177039 25177220 -98898952 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 777 546 91 0 0 chr9 25177220 25177297 -98898875 + (TCTCCC)n Simple_repeat Simple_repeat 4 80 0 3 777 9693 153 76 42 chr9 25177312 25179477 -98896695 - L1_Mur3 LINE L1 -2396 3484 1247 3 777 350 278 131 57 chr9 25179479 25179815 -98896357 + L1_Mur3 LINE L1 102 462 -7264 3 777 954 208 35 0 chr9 25179823 25180056 -98896116 + L1_Mur3 LINE L1 945 1187 -5795 3 777 978 226 55 21 chr9 25180075 25180310 -98895862 - L1_Mur3 LINE L1 -6466 1262 1020 3 777 2962 221 81 26 chr9 25180646 25181411 -98894761 - L1_Mur3 LINE L1 -6700 1028 222 3 777 969 282 25 29 chr9 25182334 25182608 -98893564 + B4A SINE B4 17 289 -3 3 777 507 276 15 7 chr9 25182791 25182926 -98893246 + ID_B1 SINE B4 53 188 -36 3 777 206 67 0 0 chr9 25182931 25182947 -98893225 + (CA)n Simple_repeat Simple_repeat 2 17 0 3 777 594 41 0 0 chr9 25182947 25183020 -98893152 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 777 206 67 0 0 chr9 25183020 25183033 -98893139 + (CA)n Simple_repeat Simple_repeat 2 14 0 3 777 441 206 0 0 chr9 25183033 25183135 -98893037 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 777 1055 212 105 7 chr9 25183135 25183420 -98892752 + RMER20B LTR ERVK 311 623 -4 3 777 553 284 75 61 chr9 25186687 25186965 -98889207 + B4 SINE B4 3 284 -8 3 777 258 298 21 11 chr9 25186999 25187094 -98889078 - MER47A DNA MER2_type -270 96 1 3 777 228 370 14 0 chr9 25187167 25187255 -98888917 - MIRb SINE MIR -139 129 35 3 777 932 41 0 8 chr9 25187748 25187870 -98888302 + (TTC)n Simple_repeat Simple_repeat 1 121 0 3 777 1134 65 0 0 chr9 25187871 25188010 -98888162 - B1_Mm SINE Alu -8 139 1 3 777 606 250 7 126 chr9 25188068 25188209 -98887963 - Lx9 LINE L1 -127 7517 7392 3 777 2089 173 105 0 chr9 25188209 25188590 -98887582 + MTC LTR MaLR 1 421 0 3 777 606 250 7 126 chr9 25188590 25188741 -98887431 - Lx9 LINE L1 -253 7391 7260 3 777 26 30 0 0 chr9 25188922 25188955 -98887217 + AT_rich Low_complexity Low_complexity 1 33 0 3 777 21297 72 10 10 chr9 25188955 25192463 -98883709 - L1Md_F2 LINE L1 -11 6571 3069 3 777 767 302 64 14 chr9 25194333 25194615 -98881557 + MER2 DNA MER2_type 30 325 -20 3 777 460 227 36 18 chr9 25195188 25195300 -98880872 + PB1D10 SINE Alu 3 116 -1 3 777 180 125 0 0 chr9 25195839 25195871 -98880301 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 3 777 204 191 64 0 chr9 25197196 25197290 -98878882 + CT-rich Low_complexity Low_complexity 1 100 0 3 777 1059 185 149 53 chr9 25197375 25197751 -98878421 + RLTR20B3 LTR ERVK 21 432 -145 3 777 705 285 11 11 chr9 25197755 25197936 -98878236 - MTEa LTR MaLR -100 279 99 3 777 228 319 24 48 chr9 25197851 25197952 -98878220 - MLT2B5 LTR ERVL -392 209 112 3 777 2071 284 49 13 chr9 25197952 25198622 -98877550 - MTE-int LTR MaLR -3 1577 884 3 777 7595 121 14 9 chr9 25199932 25201128 -98875044 + L1_Mus2 LINE L1 4562 5765 -801 3 777 437 286 136 34 chr9 25201388 25201475 -98874697 + 7SK RNA RNA 2 98 -233 3 777 783 83 0 0 chr9 25201475 25201583 -98874589 + (TTCC)n Simple_repeat Simple_repeat 2 109 0 3 777 437 286 136 34 chr9 25201583 25201701 -98874471 + 7SK RNA RNA 99 228 -103 3 777 395 280 42 8 chr9 25202380 25202499 -98873673 - B1F SINE Alu -9 140 18 3 777 434 302 109 0 chr9 25202518 25202637 -98873535 + RSINE1 SINE B4 3 134 -31 3 777 23 0 0 0 chr9 25202720 25202743 -98873429 + AT_rich Low_complexity Low_complexity 1 23 0 3 777 1260 215 103 27 chr9 25202813 25203143 -98873029 + ORR1B2 LTR MaLR 5 359 -8 3 777 18594 84 39 2 chr9 25203349 25206436 -98869736 + L1Md_F2 LINE L1 391 5586 -297 3 777 7740 56 1 40 chr9 25206438 25207472 -98868700 + L1Md_F2 LINE L1 5589 6582 0 3 777 192 77 0 0 chr9 25207601 25207627 -98868545 + (T)n Simple_repeat Simple_repeat 1 26 0 3 777 786 85 0 41 chr9 25207793 25207916 -98868256 + B1_Mm SINE Alu 30 147 0 3 777 911 145 6 0 chr9 25207932 25208104 -98868068 + GA-rich Low_complexity Low_complexity 2 174 0 3 777 969 229 127 44 chr9 25208289 25208827 -98867345 + RLTR26 LTR ERVK 7 623 -19 3 777 374 212 0 10 chr9 25209462 25209562 -98866610 + GA-rich Low_complexity Low_complexity 4 102 0 3 777 329 308 95 27 chr9 25209601 25209748 -98866424 + ID_B1 SINE B4 12 168 -56 3 777 289 276 33 66 chr9 25209803 25209985 -98866187 + L1MC3 LINE L1 7609 7784 -1 3 777 591 218 0 0 chr9 25210203 25210313 -98865859 + B1_Mur1 SINE Alu 10 119 -30 3 777 2378 157 0 10 chr9 25210433 25210819 -98865353 + RLTR14 LTR ERV1 1 382 0 3 777 243 0 0 0 chr9 25211349 25211376 -98864796 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 777 312 265 36 0 chr9 25211424 25211507 -98864665 + MTEb LTR MaLR 294 379 0 3 777 701 248 19 48 chr9 25211597 25211805 -98864367 + B3 SINE B2 15 216 0 3 777 253 224 0 0 chr9 25211933 25211982 -98864190 + L1VL2 LINE L1 443 491 -5844 3 777 3039 151 25 14 chr9 25212044 25212857 -98863315 + L1VL2 LINE L1 35 1165 -2450 3 777 183 42 0 0 chr9 25213450 25213474 -98862698 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 3 777 232 309 118 7 chr9 25215086 25215239 -98860933 - Lx8 LINE L1 -3 7470 7301 3 777 473 233 150 0 chr9 25215237 25215370 -98860802 - Lx8 LINE L1 -326 7147 6995 3 777 270 28 0 0 chr9 25215370 25215406 -98860766 + RLTR10B2 LTR ERVK 1 36 -256 3 777 1863 91 84 39 chr9 25215420 25215753 -98860419 + RLTR10B2 LTR ERVK 18 365 0 3 777 1267 232 149 26 chr9 25215753 25216103 -98860069 - Lx8 LINE L1 -473 7000 6608 3 777 680 212 11 81 chr9 25216427 25216601 -98859571 + RSINE1 SINE B4 4 165 0 3 777 301 394 34 68 chr9 25217873 25218080 -98858092 + MER20 DNA MER1_type 6 205 -14 3 777 630 0 0 0 chr9 25218590 25218660 -98857512 + (GA)n Simple_repeat Simple_repeat 2 71 0 3 777 288 349 87 20 chr9 25218875 25219024 -98857148 - MLT1J LTR MaLR -119 393 235 3 777 772 290 89 12 chr9 25219333 25219591 -98856581 - B4A SINE B4 -14 278 1 3 777 359 236 214 0 chr9 25220593 25220682 -98855490 + PB1D10 SINE Alu 3 110 -7 3 777 192 77 0 0 chr9 25220688 25220714 -98855458 + (CCA)n Simple_repeat Simple_repeat 1 26 0 3 777 1462 209 77 28 chr9 25220729 25221115 -98855057 - MTD LTR MaLR -20 399 10 3 777 5100 181 161 47 chr9 25222812 25224188 -98851984 + Lx9 LINE L1 6093 7626 -18 3 777 30 0 0 0 chr9 25224790 25224820 -98851352 + AT_rich Low_complexity Low_complexity 1 30 0 3 777 1931 201 15 8 chr9 25225553 25225950 -98850222 - MTD LTR MaLR -8 411 12 3 777 1628 248 58 40 chr9 25225990 25226486 -98849686 - RLTR16 LTR ERVK 0 505 1 3 777 1815 164 34 23 chr9 25227342 25227692 -98848480 + ORR1B1 LTR MaLR 41 394 0 3 777 38986 12 1 7 chr9 25227701 25233092 -98843080 + L1Md_A LINE L1 232 5586 -297 3 777 8975 15 0 0 chr9 25233092 25234088 -98842084 + L1Md_A LINE L1 5587 6582 0 3 777 355 252 29 10 chr9 25234332 25234436 -98841736 - PB1D10 SINE Alu 0 117 12 3 777 332 250 161 19 chr9 25234563 25234718 -98841454 - L1MC4 LINE L1 -970 7072 6896 3 777 331 284 48 10 chr9 25235222 25235325 -98840847 - ID_B1 SINE B4 -38 186 80 3 777 22 35 0 0 chr9 25235480 25235509 -98840663 + AT_rich Low_complexity Low_complexity 1 29 0 3 777 1278 302 144 22 chr9 25235518 25236205 -98839967 + Lx8 LINE L1 6703 7473 0 3 777 396 331 73 75 chr9 25236260 25236724 -98839448 + MLT1D LTR MaLR 43 505 0 3 777 465 19 0 0 chr9 25236916 25236970 -98839202 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 777 439 192 0 13 chr9 25237135 25237214 -98838958 - B4A SINE B4 -210 82 5 3 777 23 0 0 0 chr9 25238314 25238337 -98837835 + AT_rich Low_complexity Low_complexity 1 23 0 3 777 1084 73 0 0 chr9 25238374 25238510 -98837662 + B1_Mus1 SINE Alu 3 138 -10 3 777 477 0 0 0 chr9 25238510 25238563 -98837609 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 777 1216 90 51 0 chr9 25238575 25238752 -98837420 + B2_Mm2 SINE B2 2 187 -8 3 777 873 280 128 0 chr9 25238802 25239091 -98837081 + MTE2a LTR MaLR 24 349 -30 3 777 257 135 19 0 chr9 25239096 25239148 -98837024 + T-rich Low_complexity Low_complexity 3 55 0 3 777 301 215 25 0 chr9 25239149 25239228 -98836944 + (TCTCTG)n Simple_repeat Simple_repeat 6 86 0 3 777 515 266 40 0 chr9 25239240 25239364 -98836808 - B1_Mur1 SINE Alu -20 129 1 3 777 180 77 0 0 chr9 25239387 25239413 -98836759 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 3 777 1196 55 7 0 chr9 25240219 25240365 -98835807 - B1_Mm SINE Alu 0 147 1 3 777 274 381 0 0 chr9 25241882 25242055 -98834117 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 777 1652 225 45 12 chr9 25242409 25242831 -98833341 - RMER20A LTR ERVK -69 447 12 3 777 498 196 0 0 chr9 25242854 25242966 -98833206 + (CATCC)n Simple_repeat Simple_repeat 3 114 0 3 777 207 100 0 0 chr9 25243007 25243037 -98833135 + (T)n Simple_repeat Simple_repeat 1 30 0 3 777 420 309 107 48 chr9 25244551 25244823 -98831349 + L1MD2 LINE L1 49 336 -6211 3 777 30 0 0 0 chr9 25245492 25245522 -98830650 + AT_rich Low_complexity Low_complexity 1 30 0 4 777 711 256 95 46 chr9 25245538 25245779 -98830393 - B4A SINE B4 -1 291 39 4 777 396 0 0 0 chr9 25245795 25245839 -98830333 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 777 378 0 0 0 chr9 25245839 25245880 -98830292 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 777 278 299 109 8 chr9 25246726 25246854 -98829318 + L1MD2 LINE L1 1042 1182 -5458 3 777 316 340 6 25 chr9 25246861 25247018 -98829154 - L1MEf LINE L1 -5268 932 779 4 777 604 179 74 54 chr9 25247219 25247367 -98828805 + B3A SINE B2 1 151 -47 4 777 270 0 0 0 chr9 25247375 25247405 -98828767 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 777 25 0 0 0 chr9 25248133 25248158 -98828014 + AT_rich Low_complexity Low_complexity 1 25 0 4 777 3485 115 49 2 chr9 25248158 25248689 -98827483 - Lx4A LINE L1 0 7058 6503 4 777 3557 107 2 2 chr9 25248693 25249190 -98826982 - L1_Mur2 LINE L1 -19 5858 5362 4 777 438 138 0 24 chr9 25249185 25249267 -98826905 - L1_Mur2 LINE L1 -1359 4518 4439 4 777 292 252 210 8 chr9 25250018 25250142 -98826030 - L1MD LINE L1 -2484 5511 5363 4 777 540 242 13 13 chr9 25250152 25250307 -98825865 - L1MC LINE L1 -824 5322 5168 4 777 251 186 0 0 chr9 25250319 25250362 -98825810 - L1M5 LINE L1 -1538 4608 4566 4 777 1290 0 0 62 chr9 25251444 25251636 -98824536 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 4 777 259 56 111 0 chr9 25251640 25251694 -98824478 + GA-rich Low_complexity Low_complexity 3 62 0 4 777 802 285 53 53 chr9 25251696 25252033 -98824139 - MTEa LTR MaLR -42 337 1 4 777 1190 202 9 0 chr9 25253452 25253675 -98822497 + URR1B DNA MER1_type 1 225 0 4 777 365 287 83 52 chr9 25253797 25254071 -98822101 + L1M5 LINE L1 5532 5812 -350 4 777 192 256 23 0 chr9 25254704 25254747 -98821425 - L3 LINE CR1 -106 4383 4340 4 777 247 267 108 10 chr9 25255065 25255167 -98821005 - Charlie1b DNA MER1_type -12 511 400 4 777 389 237 98 108 chr9 25255169 25255363 -98820809 + B3A SINE B2 1 192 -3 4 777 239 310 56 37 chr9 25256017 25256178 -98819994 + MIRb SINE MIR 97 260 -8 4 777 3573 47 0 0 chr9 25256310 25256737 -98819435 + L1Md_F3 LINE L1 5159 5585 -298 4 777 8463 35 1 0 chr9 25256738 25257723 -98818449 + L1Md_F3 LINE L1 5587 6572 -12 4 777 686 257 133 19 chr9 25257724 25257994 -98818178 + Lx9 LINE L1 6176 6476 -1168 4 777 236 196 0 0 chr9 25259891 25259937 -98816235 + A-rich Low_complexity Low_complexity 2 47 0 4 777 3399 186 74 17 chr9 25259938 25260638 -98815534 + Lx9 LINE L1 6462 7201 -443 4 777 1077 153 142 19 chr9 25260608 25260868 -98815304 + Lx9 LINE L1 7353 7644 0 4 777 4109 137 135 1 chr9 25260869 25261564 -98814608 - Lx2B LINE L1 -8 6992 6205 4 777 895 291 82 4 chr9 25261595 25261864 -98814308 + B4 SINE B4 1 290 -2 4 777 246 62 0 0 chr9 25262483 25262515 -98813657 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 777 558 0 0 0 chr9 25262515 25262576 -98813596 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 777 261 250 0 0 chr9 25262577 25262625 -98813547 - tRNA-Ala-GCY_ tRNA tRNA -19 56 9 4 777 258 242 0 151 chr9 25262625 25262650 -98813522 - ID4_ SINE ID -21 62 1 4 777 575 279 100 70 chr9 25263408 25263678 -98812494 + MTEb LTR MaLR 102 379 0 4 777 825 182 0 14 chr9 25264353 25264492 -98811680 + B1_Mus2 SINE Alu 1 137 -10 4 777 686 23 0 11 chr9 25264492 25264581 -98811591 + (CAAAC)n Simple_repeat Simple_repeat 2 89 0 4 777 1146 55 7 0 chr9 25264919 25265064 -98811108 + B1_Mus1 SINE Alu 1 146 -2 4 777 25 0 0 0 chr9 25265070 25265095 -98811077 + AT_rich Low_complexity Low_complexity 1 25 0 4 777 1443 47 18 0 chr9 25265302 25265473 -98810699 - B2_Mm2 SINE B2 -19 176 3 4 777 581 221 0 64 chr9 25265473 25265613 -98810559 + B1_Mur1 SINE Alu 12 142 -7 4 777 884 301 84 30 chr9 25265665 25266032 -98810140 + L1MC LINE L1 5386 5772 -572 4 777 415 221 42 0 chr9 25266172 25266267 -98809905 + L1MB3 LINE L1 5857 5955 -216 4 777 1946 207 12 14 chr9 25266293 25266725 -98809447 - BGLII_B LTR ERVK -10 431 1 4 777 500 173 197 13 chr9 25266732 25266884 -98809288 + L1MB3 LINE L1 6002 6181 -2 4 777 555 66 0 0 chr9 25266938 25267014 -98809158 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 777 2195 115 19 0 chr9 25267743 25268065 -98808107 - Lx4A LINE L1 -2 7056 6729 4 777 258 333 118 18 chr9 25268900 25269120 -98807052 - MLT1C LTR MaLR -39 428 187 4 777 433 257 9 0 chr9 25269283 25269392 -98806780 - PB1D9 SINE Alu -7 113 4 4 777 586 149 17 26 chr9 25269716 25269833 -98806339 - B1_Mur4 SINE Alu 0 150 35 4 777 1522 210 232 20 chr9 25269893 25270384 -98805788 - RMER19B LTR ERVK 0 902 308 4 777 339 236 104 16 chr9 25270607 25270732 -98805440 + L1MEc LINE L1 2020 2155 -4245 4 777 1131 293 68 33 chr9 25270781 25271500 -98804672 + L1MB8 LINE L1 5337 6089 -89 4 777 543 224 144 0 chr9 25271524 25271649 -98804523 + B1_Mur3 SINE Alu 1 143 -6 4 777 225 259 19 0 chr9 25271650 25271704 -98804468 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 777 319 273 39 8 chr9 25271800 25271929 -98804243 + L1MEc LINE L1 2239 2371 -4029 4 777 431 175 40 30 chr9 25271968 25272068 -98804104 - MLT1A1 LTR MaLR -3 405 305 4 777 278 297 62 1 chr9 25272214 25272378 -98803794 + L1MEc LINE L1 2391 2562 -3757 4 777 827 178 0 6 chr9 25272408 25272578 -98803594 + CT-rich Low_complexity Low_complexity 1 169 0 4 777 907 158 0 0 chr9 25272578 25272724 -98803448 - B1_Mus1 SINE Alu -1 147 2 4 777 303 254 0 14 chr9 25272726 25272830 -98803342 + L1M2 LINE L1 2390 2491 -3655 4 777 3552 172 55 9 chr9 25273297 25273964 -98802208 + Lx3C LINE L1 6279 6976 0 4 777 296 259 11 34 chr9 25274308 25274396 -98801776 + MTE2a LTR MaLR 280 365 -14 4 777 934 240 73 81 chr9 25274402 25274787 -98801385 - RLTR14 LTR ERV1 0 382 1 4 777 1331 69 17 0 chr9 25274941 25275114 -98801058 + B2_Mm1t SINE B2 4 179 -14 4 777 307 88 325 100 chr9 25275161 25275281 -98800891 + B2_Mm2 SINE B2 47 193 -2 4 777 1634 186 129 5 chr9 25275377 25275750 -98800422 - MTD LTR MaLR 0 419 1 4 777 273 175 35 17 chr9 25276267 25276325 -98799847 - RMER30 DNA MER1_type -136 66 8 4 777 394 299 99 15 chr9 25276472 25276734 -98799438 - MER113 DNA MER1_type -171 350 67 4 777 207 0 0 0 chr9 25277052 25277075 -98799097 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 4 777 186 43 0 0 chr9 25277092 25277115 -98799057 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 4 777 618 51 0 0 chr9 25278324 25278402 -98797770 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 777 1554 260 33 14 chr9 25278644 25279007 -98797165 + ORR1D2 LTR MaLR 1 370 0 4 777 380 291 0 37 chr9 25279013 25279120 -98797052 + B1_Mur1 SINE Alu 26 128 -21 4 777 2736 171 71 179 chr9 25279811 25280571 -98795601 - RLTR33 LTR ERVK 0 678 1 4 777 1837 279 98 110 chr9 25280739 25281562 -98794610 + L1MC LINE L1 3652 4486 -1660 4 777 525 259 88 0 chr9 25281562 25281709 -98794463 + RSINE1 SINE B4 3 162 -3 4 777 1837 279 98 110 chr9 25281709 25282577 -98793595 + L1MC LINE L1 4487 5322 -824 4 777 683 289 112 3 chr9 25282807 25283103 -98793069 + L1MC LINE L1 5313 5640 -693 4 777 347 171 13 0 chr9 25283569 25283645 -98792527 + GA-rich Low_complexity Low_complexity 2 78 0 4 777 304 138 66 0 chr9 25283677 25283844 -98792328 + (CAA)n Simple_repeat Simple_repeat 3 180 0 4 777 357 95 0 0 chr9 25283867 25283930 -98792242 + L1Md_F2 LINE L1 6520 6582 0 4 777 240 35 0 0 chr9 25284120 25284149 -98792023 + (A)n Simple_repeat Simple_repeat 1 29 0 4 777 369 0 0 0 chr9 25285212 25285253 -98790919 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 777 432 77 0 0 chr9 25285253 25285318 -98790854 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 777 523 307 109 43 chr9 25286950 25287297 -98788875 - L1ME1 LINE L1 -16 6163 5794 4 777 439 341 25 8 chr9 25287728 25287957 -98788215 - L1ME1 LINE L1 -505 5737 5498 4 777 823 194 0 0 chr9 25291223 25291367 -98784805 - B1_Mus1 SINE Alu 0 148 5 4 777 225 0 0 0 chr9 25292119 25292144 -98784028 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 4 777 192 313 41 50 chr9 25294774 25294895 -98781277 - MIRb SINE MIR -114 154 35 4 777 855 134 15 7 chr9 25296637 25296772 -98779400 + B1_Mur2 SINE Alu 1 136 -13 4 777 396 0 0 0 chr9 25296773 25296817 -98779355 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 778 210 143 0 0 chr9 25297647 25297696 -98778476 + (T)n Simple_repeat Simple_repeat 1 49 0 4 778 259 224 124 53 chr9 25297867 25297980 -98778192 - L1MA4A LINE L1 -371 5932 5812 4 778 668 309 86 80 chr9 25298571 25298909 -98777263 - Tigger13a DNA MER2_type -260 511 172 4 778 416 271 35 12 chr9 25299109 25299195 -98776977 + B1F2 SINE Alu 1 88 -61 4 778 206 135 0 37 chr9 25299196 25299250 -98776922 + A-rich Low_complexity Low_complexity 3 54 0 4 778 23 0 0 0 chr9 25299462 25299485 -98776687 + AT_rich Low_complexity Low_complexity 1 23 0 4 778 1115 139 124 0 chr9 25299522 25299723 -98776449 + URR1A DNA MER1_type 1 226 0 4 778 31 44 0 0 chr9 25299861 25299906 -98776266 + AT_rich Low_complexity Low_complexity 1 45 0 4 778 665 206 69 0 chr9 25300279 25300410 -98775762 - B1_Mur1 SINE Alu -9 140 1 4 778 496 315 52 56 chr9 25300795 25301047 -98775125 - MLT1B LTR MaLR 0 390 140 4 778 207 385 113 38 chr9 25301618 25301831 -98774341 + L2c LINE L2 3147 3375 -12 4 778 198 330 110 0 chr9 25301824 25301933 -98774239 - MIRb SINE MIR -15 253 133 4 778 289 226 149 54 chr9 25302312 25302423 -98773749 - L1MB8 LINE L1 -78 6106 5989 4 778 1297 279 91 17 chr9 25302434 25302996 -98773176 - L1MB8 LINE L1 -276 5902 5302 4 778 404 269 81 32 chr9 25303889 25304012 -98772160 - MLT1A1 LTR MaLR -12 396 268 4 778 383 293 0 0 chr9 25304280 25304362 -98771810 + B3A SINE B2 45 126 -72 4 778 784 270 5 30 chr9 25304819 25305021 -98771151 - B4A SINE B4 0 292 96 4 778 446 261 67 30 chr9 25305188 25305322 -98770850 - B4A SINE B4 -153 139 1 4 778 5845 15 1 0 chr9 25305338 25305990 -98770182 - L1Md_A LINE L1 0 6582 5930 5 778 195 162 0 0 chr9 25306756 25306793 -98769379 + T-rich Low_complexity Low_complexity 1 37 0 5 778 296 257 0 14 chr9 25307284 25307355 -98768817 - ID4_ SINE ID -9 74 5 5 778 1399 157 0 13 chr9 25307424 25307650 -98768522 + URR1A DNA MER1_type 1 223 -3 5 778 180 0 0 0 chr9 25308068 25308088 -98768084 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 778 470 289 58 35 chr9 25308249 25308421 -98767751 - MER20 DNA MER1_type -21 198 23 5 778 408 143 0 0 chr9 25310093 25310163 -98766009 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 778 762 113 0 0 chr9 25310229 25310344 -98765828 + (TTTC)n Simple_repeat Simple_repeat 1 115 0 5 778 1305 83 0 0 chr9 25310344 25310524 -98765648 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 778 1115 117 0 11 chr9 25310524 25310705 -98765467 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 778 737 107 198 0 chr9 25310705 25310826 -98765346 - B1_Mus1 SINE Alu -3 145 1 5 778 377 275 0 0 chr9 25313490 25313570 -98762602 - ID4_ SINE ID -2 81 2 5 778 270 297 92 17 chr9 25313819 25313939 -98762233 - MER58B DNA MER1_type -135 206 78 5 778 476 289 110 128 chr9 25314052 25314342 -98761830 + B4A SINE B4 8 292 0 5 778 273 75 0 0 chr9 25314369 25314409 -98761763 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 778 435 306 86 18 chr9 25314805 25314968 -98761204 + B4A SINE B4 105 278 -14 5 778 477 221 42 0 chr9 25315020 25315115 -98761057 + PB1 SINE Alu 23 121 -6 5 778 235 196 0 73 chr9 25315071 25315126 -98761046 + ID_B1 SINE B4 174 224 0 5 778 327 323 98 18 chr9 25315368 25315592 -98760580 - L1ME3B LINE L1 -335 5905 5664 5 778 3813 66 0 12 chr9 25315596 25316112 -98760060 + L1Md_F2 LINE L1 6084 6582 0 5 778 2669 205 62 63 chr9 25317093 25317834 -98758338 + RMER17B LTR ERVK 1 740 -218 5 778 294 270 34 0 chr9 25318662 25318751 -98757421 + L1MA5 LINE L1 5912 6003 -297 5 778 1281 107 143 0 chr9 25318765 25318961 -98757211 + URR1B DNA MER1_type 1 224 -1 5 778 277 314 40 28 chr9 25318985 25319162 -98757010 + L1MA5 LINE L1 6080 6258 -42 5 778 233 282 83 14 chr9 25319203 25319275 -98756897 + ID2 SINE ID 2 78 -5 5 778 328 277 223 0 chr9 25320763 25320875 -98755297 + MER5A1 DNA MER1_type 22 158 -8 5 778 1737 121 120 11 chr9 25321523 25321807 -98754365 + MT2B LTR ERVL 1 315 -286 5 778 399 256 56 32 chr9 25321721 25321846 -98754326 - ORR1B1 LTR MaLR -226 168 41 5 778 180 0 0 0 chr9 25322834 25322854 -98753318 + (T)n Simple_repeat Simple_repeat 1 20 0 5 778 370 299 102 0 chr9 25323079 25323206 -98752966 - B1F1 SINE Alu -6 143 4 5 778 269 306 49 8 chr9 25323209 25323331 -98752841 - MIR SINE MIR -2 260 134 5 778 235 242 15 75 chr9 25323361 25323428 -98752744 - ID4 SINE ID -18 65 3 5 778 1337 185 44 89 chr9 25324804 25325165 -98751007 - Lx6 LINE L1 -1354 6106 5762 5 778 392 191 207 9 chr9 25325164 25325280 -98750892 + Lx6 LINE L1 7159 7297 -163 5 778 351 44 0 0 chr9 25325360 25325405 -98750767 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 778 611 95 26 0 chr9 25325424 25325540 -98750632 + (TCTCTG)n Simple_repeat Simple_repeat 6 124 0 5 778 22 35 0 0 chr9 25326140 25326169 -98750003 + AT_rich Low_complexity Low_complexity 1 29 0 5 778 285 321 0 13 chr9 25327750 25327829 -98748343 + MER5A DNA MER1_type 16 93 -96 5 778 192 320 0 0 chr9 25328677 25328727 -98747445 - MIRm SINE MIR -119 157 108 5 778 221 204 37 0 chr9 25329313 25329367 -98746805 + CT-rich Low_complexity Low_complexity 4 59 0 5 778 220 250 107 48 chr9 25330219 25330303 -98745869 + MIR SINE MIR 167 255 -7 5 778 22 0 0 0 chr9 25330853 25330875 -98745297 + AT_rich Low_complexity Low_complexity 1 22 0 5 778 933 215 41 5 chr9 25330916 25331112 -98745060 - B3 SINE B2 -12 204 2 5 778 183 80 0 0 chr9 25331374 25331399 -98744773 + (T)n Simple_repeat Simple_repeat 1 25 0 5 778 426 296 134 5 chr9 25331421 25331608 -98744564 + L1ME4a LINE L1 5635 5845 -279 5 778 248 318 15 0 chr9 25331621 25331687 -98744485 - MLT1H2 LTR MaLR -338 151 85 5 778 558 108 0 0 chr9 25332156 25332239 -98743933 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 778 219 173 0 0 chr9 25332477 25332529 -98743643 + GA-rich Low_complexity Low_complexity 1 52 0 5 778 315 246 0 93 chr9 25332807 25333000 -98743172 + (TGG)n Simple_repeat Simple_repeat 3 177 0 5 778 276 250 0 92 chr9 25333027 25333212 -98742960 + (TGG)n Simple_repeat Simple_repeat 3 170 0 5 778 246 274 43 34 chr9 25333455 25333572 -98742600 + L2c LINE L2 3240 3357 -30 5 778 220 299 45 22 chr9 25334234 25334323 -98741849 + MER5A DNA MER1_type 10 100 -89 5 778 3656 58 0 21 chr9 25335987 25336464 -98739708 - L1_Mus2 LINE L1 -1 6565 6099 5 778 1275 26 0 13 chr9 25336464 25336617 -98739555 + L1_Mus3 LINE L1 5761 5911 -727 5 778 228 256 0 163 chr9 25337029 25337127 -98739045 - B4 SINE B4 -100 192 111 5 778 207 0 0 0 chr9 25337158 25337181 -98738991 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 5 778 4825 206 146 167 chr9 25337212 25337765 -98738407 - Lx9 LINE L1 -1 7643 7152 5 778 289 233 145 8 chr9 25337765 25337882 -98738290 + Tigger1 DNA MER2_type 174 306 -2112 5 778 1178 69 0 0 chr9 25337883 25338028 -98738144 + B1_Mus1 SINE Alu 2 146 -2 5 778 4825 206 146 167 chr9 25338028 25339422 -98736750 - Lx9 LINE L1 -494 7150 5622 5 778 802 124 44 0 chr9 25340789 25340926 -98735246 - B1_Mus2 SINE Alu 0 147 5 5 778 228 252 176 9 chr9 25341755 25341863 -98734309 - MIRb SINE MIR -15 253 128 5 778 565 335 27 22 chr9 25342031 25342254 -98733918 - MLT1A0 LTR MaLR 0 365 142 5 778 4085 279 152 44 chr9 25342317 25343847 -98732325 - Tigger1 DNA MER2_type -83 2335 598 5 778 201 74 0 0 chr9 25343847 25343874 -98732298 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 5 778 4085 279 152 44 chr9 25343874 25344025 -98732147 - Tigger1 DNA MER2_type -1821 597 479 5 778 1164 166 32 122 chr9 25344025 25344272 -98731900 + URR1B DNA MER1_type 1 225 0 5 778 4085 279 152 44 chr9 25344272 25344679 -98731493 - Tigger1 DNA MER2_type -1940 478 20 5 778 3888 42 4 0 chr9 25344982 25345437 -98730735 + L1Md_T LINE L1 6085 6541 -41 5 778 234 321 49 0 chr9 25345477 25345558 -98730614 + RMER30 DNA MER1_type 2 86 -116 5 778 785 158 15 0 chr9 25345597 25345730 -98730442 + B1_Mus1 SINE Alu 14 148 0 5 778 913 298 158 10 chr9 25347159 25347559 -98728613 + Lx9 LINE L1 7167 7625 -19 5 778 455 287 0 49 chr9 25347564 25347707 -98728465 - RSINE1 SINE B4 -27 138 3 5 778 385 204 39 131 chr9 25348712 25348842 -98727330 + PB1D7 SINE Alu 2 119 -1 5 778 242 133 16 48 chr9 25348844 25348907 -98727265 + A-rich Low_complexity Low_complexity 3 63 0 5 778 299 182 59 29 chr9 25348943 25349011 -98727161 - RMER10B LTR ERVL -57 341 272 5 778 258 293 27 100 chr9 25349624 25349734 -98726438 - B1F SINE Alu -21 128 27 5 778 851 241 17 6 chr9 25349792 25349967 -98726205 + B3A SINE B2 5 181 -17 5 778 409 179 13 13 chr9 25350326 25350405 -98725767 + PB1D10 SINE Alu 36 114 -3 5 778 636 298 117 21 chr9 25350760 25351005 -98725167 + Lx9 LINE L1 7084 7344 -300 5 778 180 0 0 0 chr9 25351005 25351025 -98725147 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 778 333 0 0 0 chr9 25351025 25351061 -98725111 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 778 636 283 103 28 chr9 25351061 25351165 -98725007 + Lx9 LINE L1 7273 7439 -205 5 778 405 0 0 0 chr9 25351165 25351210 -98724962 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 778 333 273 95 32 chr9 25351210 25351334 -98724838 + Lx9 LINE L1 7335 7472 -1 5 778 742 244 92 43 chr9 25354114 25354439 -98721733 - L1MB3 LINE L1 -33 6150 5810 5 778 477 224 0 0 chr9 25354445 25354601 -98721571 + (CA)n Simple_repeat Simple_repeat 2 157 0 5 778 519 237 0 0 chr9 25354618 25354795 -98721377 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 778 426 291 119 6 chr9 25354796 25354972 -98721200 - L1MB3 LINE L1 -390 5781 5586 5 778 313 269 46 40 chr9 25356341 25356492 -98719680 + L1MC4 LINE L1 7690 7841 -201 5 778 602 207 18 6 chr9 25356544 25356709 -98719463 + GA-rich Low_complexity Low_complexity 1 167 0 5 778 501 47 0 0 chr9 25356700 25356764 -98719408 + (GGA)n Simple_repeat Simple_repeat 2 65 0 5 778 215 336 70 8 chr9 25357170 25357299 -98718873 + MIRb SINE MIR 60 196 -72 5 778 352 280 113 53 chr9 25357860 25358011 -98718161 + MER5A1 DNA MER1_type 1 160 -6 5 778 593 270 12 121 chr9 25358232 25358384 -98717788 - B4A SINE B4 -55 237 88 5 778 1953 144 105 3 chr9 25358384 25358717 -98717455 - ORR1B2 LTR MaLR 0 367 1 5 778 593 270 12 121 chr9 25358717 25358804 -98717368 - B4A SINE B4 -205 87 24 5 778 216 86 0 0 chr9 25358997 25359032 -98717140 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 778 494 65 478 0 chr9 25359032 25359124 -98717048 - B1_Mus2 SINE Alu -11 136 1 5 778 378 248 57 0 chr9 25359784 25359889 -98716283 - B1F2 SINE Alu -27 122 12 5 778 3019 231 149 17 chr9 25360073 25361170 -98715002 - Lx6 LINE L1 -329 7131 5890 5 778 824 198 49 38 chr9 25361172 25361470 -98714702 + Lx6 LINE L1 7124 7456 -4 5 778 276 100 0 0 chr9 25361750 25361790 -98714382 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 778 282 244 12 37 chr9 25363875 25363956 -98712216 + ID4_ SINE ID 5 83 0 5 778 387 345 52 23 chr9 25365038 25365210 -98710962 + MER58A DNA MER1_type 24 200 -24 5 778 1149 64 0 0 chr9 25365272 25365413 -98710759 + B1_Mus1 SINE Alu 2 142 -6 5 778 198 91 0 0 chr9 25365413 25365446 -98710726 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5 778 497 270 9 0 chr9 25366097 25366212 -98709960 + RSINE1 SINE B4 20 135 -30 5 778 22 103 0 0 chr9 25366240 25366318 -98709854 + AT_rich Low_complexity Low_complexity 1 78 0 5 778 327 304 53 61 chr9 25366439 25366667 -98709505 - RLTR15 LTR ERVK -62 297 72 5 778 1278 134 19 12 chr9 25366710 25366938 -98709234 - L1_Mur2 LINE L1 -1046 5100 4832 5 778 994 81 54 7 chr9 25366927 25367076 -98709096 + Lx4B LINE L1 6784 6939 -119 6 778 819 275 129 60 chr9 25367973 25368709 -98707463 - L1M4b LINE L1 -3010 3996 3210 6 778 321 169 0 0 chr9 25368709 25368768 -98707404 + T-rich Low_complexity Low_complexity 1 59 0 6 778 676 159 114 0 chr9 25368770 25368902 -98707270 - B1_Mus2 SINE Alu 0 147 1 6 778 395 222 157 29 chr9 25369207 25369309 -98706863 - PB1D10 SINE Alu -2 115 1 6 778 375 23 0 0 chr9 25369587 25369631 -98706541 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 778 369 0 0 0 chr9 25369631 25369671 -98706501 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 778 379 282 101 18 chr9 25369671 25369898 -98706274 - L1M4b LINE L1 -4472 2862 2617 6 778 1245 27 0 13 chr9 25370095 25370245 -98705927 - B1_Mus1 SINE Alu 0 148 1 6 778 22 0 0 0 chr9 25370246 25370268 -98705904 + AT_rich Low_complexity Low_complexity 1 22 0 6 778 2802 240 112 22 chr9 25370313 25371165 -98705007 - Lx9 LINE L1 -4 7640 6713 6 778 225 294 105 12 chr9 25371165 25371337 -98704835 - L1M4b LINE L1 -4595 2507 2320 6 778 1861 127 126 30 chr9 25371356 25371721 -98704451 - RLTR9E LTR ERVK 0 409 10 6 778 542 289 7 0 chr9 25371740 25371882 -98704290 - ID_B1 SINE B4 -1 223 81 6 778 266 197 61 0 chr9 25371882 25371948 -98704224 - L1M4b LINE L1 -5124 2210 2141 6 778 560 299 84 29 chr9 25373864 25374102 -98702070 - MER2 DNA MER2_type -94 251 1 6 778 208 158 0 26 chr9 25375080 25375119 -98701053 + CT-rich Low_complexity Low_complexity 6 43 0 6 778 3294 238 151 18 chr9 25375206 25376299 -98699873 - RMER1A Other Other 0 1030 1 6 778 1370 240 145 66 chr9 25376281 25376792 -98699380 - RMER1B Other Other -553 513 46 6 778 1053 131 13 71 chr9 25376921 25377160 -98699012 + RMER17C LTR ERVK 186 410 0 6 778 240 288 90 33 chr9 25377475 25377597 -98698575 - MTEa LTR MaLR -129 250 122 6 778 629 267 10 49 chr9 25377703 25377908 -98698264 + B3A SINE B2 2 198 0 6 778 429 66 0 0 chr9 25378516 25378577 -98697595 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 778 1834 78 37 0 chr9 25379888 25380130 -98696042 - L1_Mus2 LINE L1 0 6566 6316 6 778 282 259 45 34 chr9 25380389 25380477 -98695695 + PB1D10 SINE Alu 23 111 -6 6 778 503 31 15 0 chr9 25380507 25380572 -98695600 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 778 330 129 0 0 chr9 25380572 25380634 -98695538 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 778 1026 80 72 0 chr9 25382063 25382201 -98693971 + B1_Mus1 SINE Alu 1 148 0 6 778 234 301 93 47 chr9 25383110 25383239 -98692933 + RSINE1 SINE B4 2 136 -29 6 778 308 311 58 32 chr9 25383812 25383968 -98692204 - L1MA4 LINE L1 -370 5930 5771 6 778 271 300 70 0 chr9 25384823 25384923 -98691249 - MER5A DNA MER1_type -26 163 57 6 778 361 188 23 12 chr9 25385372 25385458 -98690714 - MTE2b LTR MaLR 0 379 293 6 778 243 248 122 37 chr9 25385440 25385484 -98690688 - PB1D7 SINE Alu -37 112 70 6 778 3268 26 8 0 chr9 25385484 25385861 -98690311 + L1Md_F3 LINE L1 6205 6584 0 6 778 243 194 145 29 chr9 25385861 25385915 -98690257 - PB1D7 SINE Alu -51 69 7 6 778 669 310 43 8 chr9 25386039 25386273 -98689899 - MTE2b LTR MaLR -123 256 15 6 778 435 112 0 0 chr9 25386311 25386391 -98689781 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 778 426 282 83 0 chr9 25387014 25387170 -98689002 - MER5A DNA MER1_type -5 184 16 6 778 437 242 10 10 chr9 25387564 25387664 -98688508 + PB1D10 SINE Alu 10 109 -8 6 778 695 244 89 42 chr9 25387840 25388054 -98688118 + B4A SINE B4 2 225 -67 6 778 1060 108 0 16 chr9 25388129 25388438 -98687734 + (TC)n Simple_repeat Simple_repeat 1 304 0 6 778 429 20 0 0 chr9 25388438 25388488 -98687684 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 778 422 291 0 28 chr9 25388806 25388912 -98687260 + PB1D10 SINE Alu 15 117 0 6 778 234 0 0 0 chr9 25389246 25389272 -98686900 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 778 432 0 0 0 chr9 25389405 25389453 -98686719 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 778 583 144 18 0 chr9 25389958 25390069 -98686103 + CT-rich Low_complexity Low_complexity 2 114 0 6 778 773 255 48 62 chr9 25390073 25390093 -98686079 - B4A SINE B4 -2 290 272 6 778 1305 78 0 0 chr9 25390093 25390375 -98685797 + (TG)n Simple_repeat Simple_repeat 1 282 0 6 778 773 255 48 62 chr9 25390375 25390644 -98685528 - B4A SINE B4 -21 271 3 6 778 718 180 0 92 chr9 25391817 25391970 -98684202 + B1_Mus1 SINE Alu 1 139 -9 6 778 492 18 0 0 chr9 25391970 25392027 -98684145 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 778 658 69 0 19 chr9 25392027 25392129 -98684043 + (GA)n Simple_repeat Simple_repeat 2 102 0 6 778 753 61 8 25 chr9 25392668 25392786 -98683386 + (TTTC)n Simple_repeat Simple_repeat 3 118 0 6 778 2669 133 45 18 chr9 25392788 25393232 -98682940 - Lx4A LINE L1 -10 7048 6593 6 778 468 261 26 0 chr9 25394614 25394729 -98681443 + PB1 SINE Alu 3 120 -7 6 778 929 43 29 0 chr9 25394731 25394870 -98681302 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 6 778 336 245 56 9 chr9 25395904 25396011 -98680161 - PB1D10 SINE Alu 0 117 6 6 778 1054 279 96 9 chr9 25397715 25398142 -98678030 - L1MB3 LINE L1 -8 6175 5712 6 778 267 380 26 20 chr9 25399519 25399672 -98676500 + MIRb SINE MIR 93 246 -22 6 778 539 188 8 0 chr9 25400744 25400861 -98675311 + GA-rich Low_complexity Low_complexity 1 118 0 6 778 465 269 145 72 chr9 25401173 25401546 -98674626 + L1MC3 LINE L1 6759 7158 -627 6 778 255 244 62 72 chr9 25401760 25401857 -98674315 + L2c LINE L2 3283 3378 -9 6 778 273 297 69 43 chr9 25402710 25402826 -98673346 - ORR1E LTR MaLR 0 374 256 6 778 300 302 18 36 chr9 25403042 25403152 -98673020 - ORR1E LTR MaLR -251 108 1 6 778 38831 43 1 4 chr9 25404008 25410383 -98665789 - L1Md_T LINE L1 0 6585 135 6 778 22 35 0 0 chr9 25410660 25410689 -98665483 + AT_rich Low_complexity Low_complexity 1 29 0 6 778 695 325 86 16 chr9 25412027 25412340 -98663832 + MER2 DNA MER2_type 10 344 -1 6 778 226 293 37 0 chr9 25412838 25412920 -98663252 - RMER15 LTR ERVL -65 510 426 6 778 271 322 21 11 chr9 25413155 25413249 -98662923 - Lx8 LINE L1 -323 7150 7056 6 778 23 33 0 0 chr9 25413392 25413422 -98662750 + AT_rich Low_complexity Low_complexity 1 30 0 6 778 411 242 50 0 chr9 25413473 25413602 -98662570 - L1MC2 LINE L1 -111 6222 6087 6 778 270 303 49 19 chr9 25416198 25416371 -98659801 + L1_Rod LINE L1 1816 1984 -6266 6 778 251 255 0 0 chr9 25416516 25416567 -98659605 + GA-rich Low_complexity Low_complexity 1 51 0 6 778 183 129 0 0 chr9 25416682 25416713 -98659459 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 6 778 420 195 58 0 chr9 25416955 25417042 -98659130 + B1_Mur1 SINE Alu 39 130 -19 6 778 559 334 55 34 chr9 25417067 25417544 -98658628 + L1_Rod LINE L1 1796 2282 -3565 6 778 26 50 0 0 chr9 25417549 25417589 -98658583 + AT_rich Low_complexity Low_complexity 1 40 0 6 778 3847 108 59 15 chr9 25417590 25418201 -98657971 - Lx2 LINE L1 -1 6996 6359 6 778 4943 104 45 0 chr9 25418202 25419219 -98656953 + Lx2 LINE L1 5266 6322 -675 6 778 4442 162 63 21 chr9 25419273 25419750 -98656422 - Lx3C LINE L1 -2 6974 6498 6 778 2997 40 0 0 chr9 25419750 25420096 -98656076 - ORR1A1 LTR MaLR 0 346 1 6 778 4442 162 63 21 chr9 25420096 25420468 -98655704 - Lx3C LINE L1 -479 6497 6089 6 778 4424 119 16 13 chr9 25420479 25421168 -98655004 + L1_Mur2 LINE L1 3965 4655 -1222 6 778 1270 293 92 25 chr9 25421188 25422001 -98654171 + L1_Rod LINE L1 2991 3858 -2927 6 778 1038 264 101 56 chr9 25422002 25422068 -98654104 - L1_Mur3 LINE L1 -339 5541 5442 6 778 282 56 0 0 chr9 25422068 25422104 -98654068 + (TTA)n Simple_repeat Simple_repeat 1 36 0 6 778 1038 264 101 56 chr9 25422104 25422503 -98653669 - L1_Mur3 LINE L1 -439 5441 5056 6 778 646 210 84 0 chr9 25422502 25422645 -98653527 + Lx7 LINE L1 5661 5815 -1881 6 778 395 321 101 36 chr9 25422649 25422927 -98653245 + Lx8 LINE L1 5851 6146 -1327 6 778 233 208 0 20 chr9 25422940 25422989 -98653183 + CT-rich Low_complexity Low_complexity 2 49 0 6 778 189 0 0 0 chr9 25422989 25423010 -98653162 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 778 732 23 0 0 chr9 25423011 25423097 -98653075 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 778 437 173 46 46 chr9 25423100 25423209 -98652963 - RLTR25A LTR ERVK -9 1019 911 6 778 566 162 39 169 chr9 25423205 25423383 -98652789 - RLTR25A LTR ERVK -254 774 620 6 778 966 148 78 0 chr9 25423358 25423588 -98652584 - ORR1A3-int LTR MaLR -998 965 718 6 778 1423 121 55 63 chr9 25423547 25423802 -98652370 - MT2B LTR ERVL -314 287 35 6 778 2415 142 48 72 chr9 25423830 25424331 -98651841 - RLTR25A LTR ERVK -580 523 35 6 778 1755 266 67 26 chr9 25424388 25424478 -98651694 - RLTR20B1 LTR ERVK 0 563 456 6 778 216 0 0 0 chr9 25424478 25424502 -98651670 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 778 1755 266 67 26 chr9 25424502 25424952 -98651220 - RLTR20B1 LTR ERVK -108 455 1 6 778 226 400 0 9 chr9 25425040 25425146 -98651026 - Lx8 LINE L1 -215 7258 7154 6 778 285 75 0 0 chr9 25425209 25425249 -98650923 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 778 2533 312 72 18 chr9 25425274 25426276 -98649896 + Lx8 LINE L1 6223 7278 -195 6 778 685 264 102 7 chr9 25426508 25426768 -98649404 + L1_Mur3 LINE L1 3691 3990 -1893 6 778 1458 283 38 28 chr9 25427133 25427188 -98648984 - Lx6 LINE L1 -86 7374 7320 6 778 720 80 0 0 chr9 25427188 25427288 -98648884 + (GGA)n Simple_repeat Simple_repeat 3 102 0 6 778 1458 280 42 26 chr9 25427288 25427926 -98648246 - Lx6 LINE L1 -141 7319 6455 6 779 638 292 26 0 chr9 25429642 25429796 -98646376 + RSINE1 SINE B4 5 162 -3 6 779 639 264 6 12 chr9 25429853 25430014 -98646158 + B3 SINE B2 57 216 0 6 779 8043 67 5 1 chr9 25430399 25431520 -98644652 + L1_Mus1 LINE L1 5470 6566 -1 6 779 516 157 46 0 chr9 25431628 25431736 -98644436 + Lx2 LINE L1 6884 6996 -1 6 779 292 275 21 32 chr9 25431836 25431930 -98644242 - B2_Mm2 SINE B2 -95 100 8 6 779 556 271 21 0 chr9 25432046 25432186 -98643986 - Lx7 LINE L1 -1962 5734 5592 6 779 351 276 137 44 chr9 25432186 25432368 -98643804 - RMER5 LTR ERV1 0 534 336 6 779 6491 85 14 4 chr9 25432368 25434069 -98642103 + L1VL2 LINE L1 127 1845 -1770 6 779 329 258 0 31 chr9 25434181 25434277 -98641895 - PB1D10 SINE Alu 0 117 25 6 779 208 0 62 0 chr9 25434918 25434950 -98641222 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 779 588 270 56 14 chr9 25435162 25435376 -98640796 - RMER5 LTR ERV1 -144 390 168 7 779 271 310 49 31 chr9 25435543 25435706 -98640466 - Lx7 LINE L1 -326 5554 5389 6 779 469 262 26 65 chr9 25435750 25435905 -98640267 - RSINE1 SINE B4 -14 151 3 7 779 592 293 42 25 chr9 25435917 25436200 -98639972 - L1_Rod LINE L1 -478 5369 5082 7 779 307 277 8 98 chr9 25436257 25436389 -98639783 - RMER15 LTR ERVL -161 414 295 7 779 1319 234 159 13 chr9 25436583 25437048 -98639124 + RMER5 LTR ERV1 2 534 0 7 779 261 0 0 0 chr9 25437965 25437994 -98638178 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 779 760 230 11 48 chr9 25438015 25438202 -98637970 - B3A SINE B2 -16 182 3 7 779 1189 317 59 23 chr9 25439883 25440441 -98635731 + Lx8 LINE L1 6894 7471 -2 7 779 1330 85 11 0 chr9 25440504 25440681 -98635491 + B2_Mm1t SINE B2 1 179 -14 7 779 309 146 0 35 chr9 25440802 25440859 -98635313 + B2_Mm2 SINE B2 47 101 -94 7 779 653 82 10 0 chr9 25440882 25440979 -98635193 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 7 779 560 279 127 7 chr9 25441653 25441933 -98634239 + MTE2b LTR MaLR 4 323 -56 7 779 205 98 49 0 chr9 25442037 25442078 -98634094 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 7 779 337 311 12 23 chr9 25442095 25442266 -98633906 + (TATATG)n Simple_repeat Simple_repeat 4 172 0 7 779 287 329 18 18 chr9 25442356 25442520 -98633652 + (TATATG)n Simple_repeat Simple_repeat 4 167 0 7 779 342 339 6 17 chr9 25442548 25442775 -98633397 + (TATG)n Simple_repeat Simple_repeat 1 224 0 7 779 310 310 25 19 chr9 25443258 25443419 -98632753 + (TATG)n Simple_repeat Simple_repeat 2 163 0 7 779 201 350 12 18 chr9 25443433 25443596 -98632576 + (TATG)n Simple_repeat Simple_repeat 1 162 0 7 779 192 77 0 0 chr9 25443661 25443687 -98632485 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 779 258 32 0 0 chr9 25443687 25443718 -98632454 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 779 4705 148 103 8 chr9 25444213 25445088 -98631084 - RMER17B LTR ERVK 0 958 1 7 779 353 316 0 26 chr9 25445155 25445311 -98630861 + (TATG)n Simple_repeat Simple_repeat 1 152 0 7 779 225 351 0 0 chr9 25445345 25445456 -98630716 + (TATG)n Simple_repeat Simple_repeat 1 111 0 7 779 1021 227 49 36 chr9 25445461 25445708 -98630464 + MTD LTR MaLR 1 250 -169 7 779 32608 118 23 46 chr9 25445767 25447330 -98628842 + L1Md_F2 LINE L1 450 1969 -3914 7 779 257 0 30 0 chr9 25447330 25447363 -98628809 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 779 32608 52 2 2 chr9 25447363 25450975 -98625197 + L1Md_F2 LINE L1 1970 5584 -299 7 779 7974 55 1 6 chr9 25450975 25451976 -98624196 + L1Md_F2 LINE L1 5587 6582 0 7 779 308 329 50 56 chr9 25452141 25452155 -98624017 - RLTR20D LTR ERVK 0 551 540 7 779 218 32 32 0 chr9 25452155 25452186 -98623986 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 779 420 286 25 25 chr9 25452186 25452333 -98623839 - RLTR20D LTR ERVK -21 557 392 7 779 877 255 111 27 chr9 25452323 25452585 -98623587 - RLTR20D LTR ERVK -284 284 1 7 779 869 19 9 0 chr9 25452716 25452823 -98623349 + (GGAGA)n Simple_repeat Simple_repeat 4 111 0 7 779 27922 126 17 11 chr9 25452928 25459103 -98617069 - L1_Mus2 LINE L1 0 6566 352 7 779 574 289 58 8 chr9 25459121 25459379 -98616793 - L1VL2 LINE L1 -5933 402 132 7 779 432 326 87 68 chr9 25459388 25459697 -98616475 + MLT1A0 LTR MaLR 30 344 -21 7 779 4108 139 34 7 chr9 25461059 25461741 -98614431 + RLTR13D2 LTR ERVK 1 700 -323 7 779 754 185 0 0 chr9 25461741 25461876 -98614296 + ETnERV2-int LTR ERVK 221 355 -7051 7 779 601 184 8 10 chr9 25461876 25462010 -98614162 + RLTR9B LTR ERVK 265 424 -13 7 779 432 318 101 96 chr9 25462783 25463169 -98613003 - MLT1C LTR MaLR -18 449 65 7 779 274 291 60 77 chr9 25463879 25464110 -98612062 - MIR SINE MIR 0 262 51 7 779 2027 212 224 21 chr9 25464918 25465531 -98610641 + RMER19A LTR ERVK 1 737 0 7 779 28 0 0 0 chr9 25465604 25465632 -98610540 + AT_rich Low_complexity Low_complexity 1 28 0 7 779 10097 93 28 6 chr9 25465632 25467971 -98608201 - L1_Mus1 LINE L1 -1 6566 4165 7 779 774 289 41 43 chr9 25468584 25469003 -98607169 + L1_Mur3 LINE L1 923 1340 -6388 7 779 5689 236 58 22 chr9 25469020 25470687 -98605485 + Lx9 LINE L1 5852 7579 -65 7 779 559 230 19 0 chr9 25470770 25470931 -98605241 + L1_Mur3 LINE L1 1367 1530 -4350 7 779 531 217 9 0 chr9 25470935 25471050 -98605122 + L1_Mur3 LINE L1 1874 1989 -3891 7 779 1517 58 5 0 chr9 25471081 25471272 -98604900 - B2_Mm1t SINE B2 0 193 2 7 779 1422 219 70 4 chr9 25471281 25471552 -98604620 - ORR1C1 LTR MaLR 0 378 90 7 779 3144 242 75 31 chr9 25471553 25472780 -98603392 + L1_Mur3 LINE L1 2431 3711 -2169 7 779 11458 154 19 116 chr9 25472827 25473351 -98602821 + Lx5 LINE L1 3370 3908 -1969 7 779 2098 127 32 0 chr9 25473351 25473667 -98602505 + ORR1A2 LTR MaLR 1 326 -1 7 779 9946 144 46 88 chr9 25473668 25474650 -98601522 + ORR1A2-int LTR MaLR 1 896 -1067 7 779 189 0 0 0 chr9 25474650 25474671 -98601501 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 779 9946 144 46 88 chr9 25474671 25475737 -98600435 + ORR1A2-int LTR MaLR 897 1962 -1 7 779 1783 132 25 0 chr9 25475738 25476018 -98600154 + ORR1A2 LTR MaLR 1 287 -40 7 779 11458 163 20 89 chr9 25476018 25478876 -98597296 + Lx5 LINE L1 3910 6777 -273 7 779 17388 82 17 9 chr9 25478883 25482071 -98594101 + MusHAL1 LINE L1 137 3349 -4 7 779 581 224 22 0 chr9 25482081 25482215 -98593957 + RMER12B LTR ERVK 693 829 -575 7 779 7823 106 42 3 chr9 25482218 25484158 -98592014 - L1_Mus3 LINE L1 -6 6632 4618 7 779 2089 218 62 53 chr9 25484158 25484740 -98591432 + RMER12B LTR ERVK 818 1404 0 7 779 1270 264 45 37 chr9 25484741 25485225 -98590947 + L1_Mur3 LINE L1 5353 5840 -40 7 779 1100 167 69 94 chr9 25485225 25485470 -98590702 - ORR1A4 LTR MaLR -90 239 1 7 779 1318 318 43 2 chr9 25485576 25486087 -98590085 + Lx7 LINE L1 6776 7307 -389 7 779 414 134 0 0 chr9 25486087 25486154 -98590018 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 779 200 154 18 55 chr9 25486156 25486211 -98589961 + T-rich Low_complexity Low_complexity 2 54 0 7 779 290 162 88 0 chr9 25486255 25486323 -98589849 + Lx7 LINE L1 7611 7684 -12 7 779 36 30 0 43 chr9 25488554 25488623 -98587549 + AT_rich Low_complexity Low_complexity 1 66 0 7 779 198 91 0 0 chr9 25488627 25488660 -98587512 + (TATAA)n Simple_repeat Simple_repeat 5 37 0 7 779 22 88 0 0 chr9 25488666 25488723 -98587449 + AT_rich Low_complexity Low_complexity 1 57 0 7 779 237 205 83 12 chr9 25488741 25488825 -98587347 + Lx9 LINE L1 7551 7640 -4 7 779 2885 286 112 45 chr9 25488845 25491795 -98584377 + Lx8 LINE L1 4036 7171 -302 7 779 351 0 0 0 chr9 25491798 25491837 -98584335 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 779 330 312 11 0 chr9 25491840 25491933 -98584239 - MLT2D LTR ERVL -231 183 90 7 779 741 255 109 30 chr9 25492954 25493285 -98582887 + RLTR15 LTR ERVK 1 357 -2 7 779 255 234 31 0 chr9 25493373 25493437 -98582735 - MLT2D LTR ERVL -344 70 5 7 779 387 0 0 0 chr9 25493437 25493480 -98582692 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 779 423 0 0 0 chr9 25494471 25494518 -98581654 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 779 477 50 0 0 chr9 25494518 25494577 -98581595 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 779 180 0 0 0 chr9 25495298 25495318 -98580854 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 779 5467 97 112 7 chr9 25495341 25496054 -98580118 - L1_Mus3 LINE L1 -7 6631 5823 7 779 4909 47 20 2 chr9 25496054 25496648 -98579524 - RLTR1D LTR ERV1 0 605 1 7 779 5467 97 112 7 chr9 25496648 25496819 -98579353 - L1_Mus3 LINE L1 -816 5822 5654 7 779 12653 94 21 8 chr9 25496813 25499202 -98576970 + L1VL2 LINE L1 559 2980 -635 7 779 1418 23 6 0 chr9 25499415 25499589 -98576583 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 7 779 213 154 0 0 chr9 25499786 25499825 -98576347 + GA-rich Low_complexity Low_complexity 3 41 0 7 779 996 275 126 13 chr9 25501734 25502036 -98574136 + MER2 DNA MER2_type 5 340 -5 1 779 21 57 0 0 chr9 25503129 25503164 -98573008 + AT_rich Low_complexity Low_complexity 1 35 0 2 779 260 315 14 0 chr9 25503201 25503274 -98572898 + MLT1F2 LTR MaLR 3 76 -484 3 779 798 170 0 0 chr9 25503804 25503945 -98572227 - Lx9 LINE L1 -680 6964 6824 4 779 619 192 199 0 chr9 25503943 25504089 -98572083 + Lx9 LINE L1 7021 7195 -449 4 779 436 294 196 53 chr9 25504767 25505033 -98571139 + MLT1A0 LTR MaLR 1 304 -61 5 779 417 335 12 18 chr9 25505184 25505348 -98570824 - Lx7 LINE L1 -199 7274 7112 6 779 1087 262 97 24 chr9 25505631 25506161 -98570011 - Lx7 LINE L1 -1779 5917 5353 6 779 718 252 122 0 chr9 25506170 25506464 -98569708 - L1MA5 LINE L1 -8 6292 5963 7 779 1110 82 0 20 chr9 25507405 25507555 -98568617 + B1_Mus1 SINE Alu 1 147 -1 8 779 5569 78 21 14 chr9 25508274 25509175 -98566997 - MusHAL1 LINE L1 -1789 923 17 9 779 822 224 36 58 chr9 25509176 25509399 -98566773 - RLTR16 LTR ERVK -287 218 1 1 779 336 309 0 24 chr9 25509399 25509515 -98566657 + MLT1A0 LTR MaLR 31 143 -222 1 779 955 226 147 22 chr9 25509628 25510040 -98566132 + Lx9 LINE L1 7182 7644 0 1 779 279 0 0 0 chr9 25510136 25510167 -98566005 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 779 184 295 16 0 chr9 25510655 25510716 -98565456 - MIR SINE MIR -77 185 124 1 779 504 86 0 0 chr9 25511421 25511491 -98564681 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 779 189 175 0 0 chr9 25512003 25512043 -98564129 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 1 779 313 283 32 11 chr9 25512444 25512537 -98563635 + MIR SINE MIR 119 213 -49 1 779 790 195 2 7 chr9 25513592 25514037 -98562135 + (CA)n Simple_repeat Simple_repeat 1 442 0 1 779 551 215 4 8 chr9 25514054 25514311 -98561861 + (CA)n Simple_repeat Simple_repeat 1 255 0 1 779 374 198 0 49 chr9 25515140 25515262 -98560910 - Lx9 LINE L1 -3 7641 7526 1 779 383 243 113 7 chr9 25515283 25515424 -98560748 - Lx6 LINE L1 -27 7433 7278 2 779 294 259 42 4 chr9 25515427 25515526 -98560646 + Lx6 LINE L1 7182 7269 -191 2 779 343 310 99 35 chr9 25517119 25517425 -98558747 - MLT1A0 LTR MaLR -12 362 11 2 779 334 254 51 112 chr9 25517457 25517653 -98558519 + MLT1D LTR MaLR 3 184 -443 2 779 300 328 75 65 chr9 25517742 25517928 -98558244 + MLT1D LTR MaLR 318 505 0 2 779 264 192 81 14 chr9 25518074 25518148 -98558024 - MER67D LTR ERV1 0 514 436 2 779 605 243 0 0 chr9 25518452 25518557 -98557615 + URR1B DNA MER1_type 2 106 -119 2 779 1791 193 9 30 chr9 25518557 25518888 -98557284 - ORR1B1 LTR MaLR 0 394 71 2 779 697 167 16 16 chr9 25518900 25519028 -98557144 + URR1B DNA MER1_type 95 222 -3 2 779 993 289 35 12 chr9 25519060 25519460 -98556712 - L1MA6 LINE L1 -242 6058 5650 2 779 1097 291 37 48 chr9 25519476 25519855 -98556317 + MTE2b LTR MaLR 1 375 -4 2 779 217 325 82 37 chr9 25519914 25520048 -98556124 - MIRc SINE MIR -118 150 11 2 779 305 104 0 0 chr9 25520861 25520909 -98555263 - MT2A LTR ERVL 0 533 486 2 779 2452 211 12 0 chr9 25521009 25521496 -98554676 - MT2A LTR ERVL -40 493 1 2 779 274 318 9 45 chr9 25522237 25522349 -98553823 + MLT1E2 LTR MaLR 78 185 -442 3 779 593 251 113 36 chr9 25524794 25524988 -98551184 + B3 SINE B2 2 210 -6 3 779 288 111 0 0 chr9 25524994 25525048 -98551124 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 3 779 391 310 43 8 chr9 25525135 25525252 -98550920 - RSINE1 SINE B4 -38 127 7 3 779 271 297 50 25 chr9 25525975 25526096 -98550076 + MIRb SINE MIR 87 210 -58 3 779 228 374 30 59 chr9 25526422 25526624 -98549548 + MLT2B5 LTR ERVL 280 475 -80 3 779 483 18 0 0 chr9 25526708 25526764 -98549408 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 3 779 3258 167 100 18 chr9 25526802 25527075 -98549097 - Lx4B LINE L1 -24 7034 6768 3 779 510 17 0 0 chr9 25527075 25527134 -98549038 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 779 3258 167 100 18 chr9 25527134 25527542 -98548630 - Lx4B LINE L1 -291 6767 6298 3 779 327 225 0 0 chr9 25527540 25527611 -98548561 - Lx4B LINE L1 -886 6172 6102 3 779 8780 172 19 56 chr9 25527596 25529720 -98546452 - L1_Mur2 LINE L1 -1689 4188 2142 3 779 8546 117 17 26 chr9 25529730 25529864 -98546308 - Lx2 LINE L1 -2 6995 6853 4 779 6157 121 27 8 chr9 25529864 25530805 -98545367 - RMER17B LTR ERVK 0 958 1 4 779 21694 155 29 15 chr9 25530805 25535704 -98540468 - Lx2 LINE L1 -145 6852 1919 4 779 180 0 0 0 chr9 25535704 25535724 -98540448 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 779 21694 171 33 11 chr9 25535724 25536404 -98539768 - Lx2 LINE L1 -3968 1918 1200 4 779 459 0 0 0 chr9 25536404 25536455 -98539717 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 779 1510 211 49 27 chr9 25536455 25536754 -98539418 - Lx2 LINE L1 -5785 1199 888 4 779 490 244 57 28 chr9 25537302 25537479 -98538693 - L1_Rod LINE L1 -23 5857 5655 4 779 520 273 0 34 chr9 25537534 25537712 -98538460 + L1_Rod LINE L1 5460 5631 -216 4 779 802 285 119 42 chr9 25537808 25537945 -98538227 + ORR1D2 LTR MaLR 35 165 -205 4 779 459 0 0 0 chr9 25537945 25537996 -98538176 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 779 189 0 0 0 chr9 25537996 25538016 -98538156 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 779 802 285 119 42 chr9 25538016 25538188 -98537984 + ORR1D2 LTR MaLR 166 368 -2 4 779 1227 54 0 0 chr9 25538220 25538367 -98537805 + B1_Mus1 SINE Alu 2 148 0 4 779 189 0 0 0 chr9 25538373 25538394 -98537778 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 5 779 3059 290 71 98 chr9 25538397 25539247 -98536925 + ORR1D2-int LTR MaLR 12 884 -486 4 779 1170 75 0 0 chr9 25539247 25539394 -98536778 + B1_Mus2 SINE Alu 1 147 0 5 779 3059 290 71 98 chr9 25539394 25539799 -98536373 + ORR1D2-int LTR MaLR 885 1233 -137 4 779 426 316 18 37 chr9 25539801 25539965 -98536207 + Lx7 LINE L1 6391 6551 -1145 5 779 5748 196 5 172 chr9 25539972 25540520 -98535652 + L1_Mus2 LINE L1 4129 4429 -1451 5 779 2560 69 17 8 chr9 25540520 25540873 -98535299 + L1Md_F2 LINE L1 6227 6582 0 5 779 8876 88 4 36 chr9 25540873 25543105 -98533067 + L1_Mus2 LINE L1 4430 6564 -2 5 779 3012 259 53 7 chr9 25543131 25543966 -98532206 + Lx7 LINE L1 6541 7413 -283 5 779 243 279 26 18 chr9 25543998 25544111 -98532061 + Lx7 LINE L1 7565 7678 -18 5 779 558 191 83 28 chr9 25544120 25544265 -98531907 + ORR1D2-int LTR MaLR 1212 1364 -6 4 779 750 273 115 71 chr9 25544257 25544580 -98531592 + ORR1D2 LTR MaLR 34 370 0 4 779 506 361 44 54 chr9 25544635 25544832 -98531340 - MER21B LTR ERV1 -569 294 90 5 779 3506 62 9 2 chr9 25544832 25545284 -98530888 - L1_Mus2 LINE L1 -1 6565 6111 5 779 506 361 44 54 chr9 25545284 25545382 -98530790 - MER21B LTR ERV1 -774 89 2 5 779 22 35 0 0 chr9 25549271 25549300 -98526872 + AT_rich Low_complexity Low_complexity 1 29 0 5 779 6016 110 25 12 chr9 25549301 25549857 -98526315 - L1_Mm LINE L1 -569 5314 4743 5 779 1277 117 21 0 chr9 25549857 25550045 -98526127 - B2_Mm2 SINE B2 -3 192 1 6 779 6016 110 25 12 chr9 25550045 25550456 -98525716 - L1_Mm LINE L1 -1141 4742 4335 5 779 6804 82 18 7 chr9 25550456 25551681 -98524491 + L1_Mus1 LINE L1 5331 6566 -1 6 779 1126 75 0 26 chr9 25551691 25551842 -98524330 + B1_Mus2 SINE Alu 1 147 0 6 779 193 53 0 73 chr9 25551849 25551890 -98524282 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 6 779 724 176 12 0 chr9 25551910 25552050 -98524122 - B2_Mm2 SINE B2 -42 156 4 6 779 216 184 0 39 chr9 25552115 25552166 -98524006 + (TAA)n Simple_repeat Simple_repeat 1 49 0 6 779 245 51 26 0 chr9 25552170 25552209 -98523963 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 779 1216 225 19 26 chr9 25552215 25552659 -98523513 - Lx4B LINE L1 -43 7015 6497 6 779 2084 135 3 12 chr9 25552658 25553003 -98523169 + L1_Mur2 LINE L1 5536 5877 0 6 779 297 291 107 7 chr9 25553029 25553178 -98522994 + MER31B LTR ERV1 273 436 -30 6 779 749 305 110 12 chr9 25554079 25554398 -98521774 + MLT1A0 LTR MaLR 9 358 -7 7 779 393 22 0 0 chr9 25554768 25554814 -98521358 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 779 660 144 3 28 chr9 25555613 25555735 -98520437 + B1_Mm SINE Alu 34 150 0 7 779 3069 268 78 81 chr9 25556005 25557423 -98518749 - Lx9 LINE L1 -916 6728 5302 7 779 234 0 0 0 chr9 25557423 25557449 -98518723 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 779 3069 237 47 22 chr9 25557449 25557772 -98518400 - Lx9 LINE L1 -546 5301 4971 7 779 396 0 0 0 chr9 25557960 25558004 -98518168 + (TAA)n Simple_repeat Simple_repeat 2 45 0 7 97 977 318 82 12 chr9 25558746 25559087 -98517085 + MTE2b LTR MaLR 6 370 -9 7 780 39004 45 0 3 chr9 25559783 25566432 -98509740 - L1Md_T LINE L1 0 6585 1 7 780 600 62 0 0 chr9 25567010 25567091 -98509081 + (TG)n Simple_repeat Simple_repeat 1 81 0 7 780 252 167 0 0 chr9 25567096 25567144 -98509028 + G-rich Low_complexity Low_complexity 3 50 0 7 780 519 297 60 6 chr9 25567144 25567310 -98508862 - Lx8 LINE L1 -1004 6469 6295 8 780 946 168 11 23 chr9 25567767 25567944 -98508228 + URR1A DNA MER1_type 50 224 -2 8 780 3507 15 0 0 chr9 25568121 25568514 -98507658 + L1Md_A LINE L1 5194 5586 -297 8 780 8890 38 0 0 chr9 25568515 25569510 -98506662 + L1Md_A LINE L1 5588 6582 0 8 780 3132 163 31 0 chr9 25569736 25570220 -98505952 + RMER13B LTR ERVK 1 499 -409 8 780 7009 181 51 8 chr9 25571085 25572972 -98503200 + Lx5 LINE L1 4116 6144 -906 8 780 432 0 0 0 chr9 25572972 25573020 -98503152 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 780 7009 217 30 8 chr9 25573020 25573909 -98502263 + Lx5 LINE L1 6145 7029 -21 8 780 722 325 126 7 chr9 25574511 25574796 -98501376 - RMER1A Other Other -694 336 18 8 780 1091 232 96 0 chr9 25574841 25575061 -98501111 - RMER1B Other Other -727 339 99 8 780 635 283 22 67 chr9 25575072 25575386 -98500786 + L1_Rod LINE L1 2720 3019 -2828 8 780 4748 117 35 9 chr9 25575393 25575855 -98500317 + L1_Mur2 LINE L1 583 1061 -6025 8 780 4242 50 2 12 chr9 25575855 25576358 -98499814 - L1_Mus1 LINE L1 0 6567 6070 9 780 4748 110 24 5 chr9 25576358 25577014 -98499158 + L1_Mur2 LINE L1 1062 1729 -4148 8 780 1923 176 138 3 chr9 25577014 25577469 -98498703 + Lx4A LINE L1 6490 7058 0 9 780 335 242 79 65 chr9 25577486 25577720 -98498452 + L1_Rod LINE L1 3017 3245 -2602 8 780 10321 48 1 2 chr9 25577774 25579025 -98497147 + L1Md_F3 LINE L1 4337 5585 -298 9 780 8308 41 13 28 chr9 25579026 25580039 -98496133 + L1Md_F3 LINE L1 5587 6584 0 9 780 2291 248 56 51 chr9 25580046 25580934 -98495238 + L1_Rod LINE L1 4291 5183 -664 8 780 333 118 0 0 chr9 25581034 25581085 -98495087 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 780 3476 101 15 0 chr9 25581119 25581583 -98494589 + L1_Mus4 LINE L1 6161 6631 -5 9 780 188 341 46 23 chr9 25581637 25581724 -98494448 - MER5B DNA MER1_type -61 117 29 9 780 28 0 0 0 chr9 25582214 25582242 -98493930 + AT_rich Low_complexity Low_complexity 1 28 0 9 780 2191 280 126 53 chr9 25582321 25583327 -98492845 - Lx9 LINE L1 -253 7391 6312 9 780 261 407 34 41 chr9 25583405 25583551 -98492621 + FordPrefect DNA Tip100 506 650 -1033 9 780 3735 15 2 0 chr9 25583600 25583995 -98492177 - MTA_Mm LTR MaLR 0 396 1 9 780 3940 29 2 0 chr9 25583995 25584478 -98491694 - MTA_Mm-int LTR MaLR 0 1098 615 9 780 3278 21 5 85 chr9 25584479 25584901 -98491271 - RLTR10 LTR ERVK -2 388 1 1 780 13082 25 14 0 chr9 25584901 25586749 -98489423 - RLTR10-int LTR ERVK 0 1987 41 1 780 2906 31 5 85 chr9 25586761 25587183 -98488989 - RLTR10 LTR ERVK -2 388 1 1 780 5217 16 2 0 chr9 25587184 25587803 -98488369 - MTA_Mm-int LTR MaLR -478 620 1 9 780 3706 20 2 0 chr9 25587803 25588198 -98487974 - MTA_Mm LTR MaLR 0 396 1 9 780 244 407 0 0 chr9 25588214 25588305 -98487867 + FordPrefect DNA Tip100 717 807 -876 9 780 759 302 82 21 chr9 25588302 25588630 -98487542 + FordPrefect DNA Tip100 1189 1536 -147 9 780 315 0 0 0 chr9 25588633 25588668 -98487504 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 780 294 29 0 0 chr9 25589661 25589696 -98486476 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 780 243 0 0 0 chr9 25589739 25589766 -98486406 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 780 348 24 0 0 chr9 25589804 25589845 -98486327 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 780 21 0 0 0 chr9 25589845 25589866 -98486306 + AT_rich Low_complexity Low_complexity 1 21 0 1 780 1135 246 58 71 chr9 25590726 25591123 -98485049 + RLTR11A LTR ERVK 7 385 -149 1 780 1485 212 73 30 chr9 25591102 25591562 -98484610 + RLTR1 LTR ERV1 57 624 0 1 780 592 218 63 58 chr9 25591563 25591753 -98484419 + RLTR11A LTR ERVK 338 528 0 1 780 252 287 33 33 chr9 25592194 25592284 -98483888 - MLT1A0 LTR MaLR -98 267 178 1 780 1303 258 10 10 chr9 25592310 25592608 -98483564 - MTEa LTR MaLR -14 365 68 1 780 3385 117 28 48 chr9 25592686 25593226 -98482946 - Lx LINE L1 0 6654 6126 1 780 1468 193 129 11 chr9 25593404 25593771 -98482401 + MTD LTR MaLR 6 406 -13 1 780 228 350 84 61 chr9 25593944 25594075 -98482097 - ORR1E LTR MaLR -162 197 64 1 780 4254 135 51 2 chr9 25594362 25595006 -98481166 - Lx3B LINE L1 -3 6970 6295 1 780 4958 68 0 10 chr9 25595052 25595643 -98480529 - L1_Mus1 LINE L1 -1 6566 5982 1 780 18082 123 6 2 chr9 25595646 25598397 -98477775 - L1_Mm LINE L1 -79 5804 3045 1 780 608 128 0 0 chr9 25598397 25598491 -98477681 - L1_Mm LINE L1 -3223 2660 2567 1 780 2291 183 75 24 chr9 25598499 25598707 -98477465 + RLTR13D6 LTR ERVK 10 213 -689 1 780 3053 52 26 0 chr9 25598707 25599052 -98477120 - IAPEY2_LTR LTR ERVK -3 354 1 1 780 2291 211 94 40 chr9 25599052 25599811 -98476361 + RLTR13D6 LTR ERVK 175 936 -47 1 780 9217 157 26 74 chr9 25599811 25602260 -98473912 - L1Md_F LINE L1 -3310 2573 261 1 780 2901 119 30 0 chr9 25602276 25602714 -98473458 - Lx3B LINE L1 -662 6311 5861 1 780 180 0 0 0 chr9 25603077 25603097 -98473075 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 780 3102 151 84 24 chr9 25603642 25604177 -98471995 - RMER2 LTR ERV1 0 567 1 1 780 1894 156 109 101 chr9 25604625 25605131 -98471041 + RLTR28 LTR ERVL 1 510 -14 1 780 429 309 71 0 chr9 25605614 25605740 -98470432 + MTEa LTR MaLR 1 135 -244 1 780 315 352 84 27 chr9 25605740 25605839 -98470333 + MT2A LTR ERVL 1 238 -295 1 780 334 50 0 0 chr9 25605885 25605925 -98470247 - L1_Mus1 LINE L1 -161 6406 6367 1 780 1172 72 0 0 chr9 25605974 25606126 -98470046 + L1_Mus1 LINE L1 6416 6567 0 1 780 289 317 12 12 chr9 25606137 25606220 -98469952 + MT2A LTR ERVL 260 342 -191 1 780 27 0 0 0 chr9 25606549 25606576 -98469596 + AT_rich Low_complexity Low_complexity 1 27 0 1 780 1341 20 0 0 chr9 25606601 25606748 -98469424 - B1_Mus2 SINE Alu 0 147 1 1 780 413 90 15 0 chr9 25606811 25606878 -98469294 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 780 207 0 0 0 chr9 25606894 25606917 -98469255 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 780 826 291 51 32 chr9 25606983 25606995 -98469177 - Lx7 LINE L1 -375 7321 7309 1 780 423 0 0 0 chr9 25606995 25607042 -98469130 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 780 826 291 51 32 chr9 25607042 25607399 -98468773 - Lx7 LINE L1 -388 7308 6945 1 780 8978 95 16 7 chr9 25607430 25608644 -98467528 - Lx3_Mus LINE L1 -1 7008 5783 1 780 5656 65 7 11 chr9 25608642 25609355 -98466817 - L1Md_F2 LINE L1 -1 6581 5872 1 780 21411 91 81 14 chr9 25609355 25611710 -98464462 - Lx3_Mus LINE L1 -147 5739 3138 1 780 207 0 0 0 chr9 25611710 25611733 -98464439 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 780 7356 193 122 22 chr9 25611733 25612624 -98463548 - L1_Mm LINE L1 -2749 3134 2275 1 780 1618 219 46 10 chr9 25612622 25613092 -98463080 - L1_Mur1 LINE L1 -5982 1000 220 1 780 815 265 3 93 chr9 25613092 25613437 -98462735 - L1_Mur1 LINE L1 -6668 314 1 1 780 1643 224 102 12 chr9 25613460 25613863 -98462309 - RMER19B LTR ERVK -123 779 341 1 780 1095 193 0 45 chr9 25613890 25614162 -98462010 - RMER19B LTR ERVK -682 220 1 1 780 1892 298 69 43 chr9 25614162 25615001 -98461171 - Lx7 LINE L1 -745 6951 6091 1 780 327 330 77 6 chr9 25615365 25615548 -98460624 - L1MD LINE L1 -1827 4319 4124 1 780 403 264 330 10 chr9 25615623 25615927 -98460245 - L1MC2 LINE L1 -10 6334 5934 1 780 234 0 0 0 chr9 25615931 25615957 -98460215 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 780 357 125 0 0 chr9 25615959 25616015 -98460157 + (GGGAGA)n Simple_repeat Simple_repeat 5 60 0 1 780 302 283 66 8 chr9 25616019 25616140 -98460032 - L1MC2 LINE L1 -439 5894 5767 1 780 21 0 0 0 chr9 25616169 25616190 -98459982 + AT_rich Low_complexity Low_complexity 1 21 0 1 780 1190 43 0 0 chr9 25616190 25616331 -98459841 - B1_Mus2 SINE Alu -5 142 2 1 780 557 311 96 19 chr9 25616341 25616439 -98459733 - L1MC2 LINE L1 -2274 3872 3769 1 780 258 32 0 0 chr9 25616439 25616470 -98459702 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 780 557 311 96 19 chr9 25616470 25617257 -98458915 - L1MC2 LINE L1 -2378 3768 2920 1 780 622 238 15 15 chr9 25617259 25617391 -98458781 - B3 SINE B2 0 216 85 1 780 1951 157 62 23 chr9 25617593 25617946 -98458226 - ORR1B2 LTR MaLR 0 367 1 1 780 438 315 0 0 chr9 25618028 25618120 -98458052 - B3 SINE B2 -124 92 1 1 780 1234 153 33 62 chr9 25618195 25618359 -98457813 - RLTR28 LTR ERVL -283 241 84 1 780 368 20 0 20 chr9 25618359 25618409 -98457763 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 1 780 1234 153 33 62 chr9 25618409 25618487 -98457685 - RLTR28 LTR ERVL -441 83 6 1 780 297 0 0 0 chr9 25618535 25618568 -98457604 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 780 282 91 0 0 chr9 25618568 25618612 -98457560 - L1_Mus3 LINE L1 -16 6622 6579 1 780 549 120 0 0 chr9 25619405 25619497 -98456675 + (GA)n Simple_repeat Simple_repeat 1 92 0 1 780 1452 45 0 0 chr9 25619944 25620166 -98456006 + (TTTC)n Simple_repeat Simple_repeat 1 222 0 1 780 1082 109 7 0 chr9 25620179 25620326 -98455846 - B1_Mus1 SINE Alu 0 148 1 1 780 4223 25 12 0 chr9 25620326 25620813 -98455359 - MT2_Mm LTR ERVL 0 493 1 1 780 441 0 0 0 chr9 25621158 25621207 -98454965 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 780 2391 221 27 8 chr9 25621209 25621724 -98454448 - RMER5 LTR ERV1 -9 525 1 1 780 278 331 96 89 chr9 25623238 25623686 -98452486 - MER34 LTR ERV1 -66 476 26 1 780 798 281 9 5 chr9 25624504 25624715 -98451457 - ID_B1 SINE B4 -8 216 5 1 780 283 340 32 11 chr9 25624748 25624843 -98451329 - PB1D7 SINE Alu -5 115 19 1 780 1403 254 80 14 chr9 25624855 25625206 -98450966 - MTEa LTR MaLR -5 374 1 1 780 2064 312 77 82 chr9 25625208 25625250 -98450922 - MTEa-int LTR MaLR -2 1578 1535 1 780 387 0 0 0 chr9 25625250 25625293 -98450879 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 780 2064 312 77 82 chr9 25625293 25626183 -98449989 - MTEa-int LTR MaLR -46 1534 651 1 780 1711 299 105 27 chr9 25626414 25626691 -98449481 - MTEa-int LTR MaLR -858 722 423 1 780 1265 141 18 18 chr9 25626691 25626915 -98449257 + URR1A DNA MER1_type 2 225 -1 1 780 1711 299 105 27 chr9 25626915 25627295 -98448877 - MTEa-int LTR MaLR -1158 422 15 1 780 1447 265 57 30 chr9 25627296 25627573 -98448599 - MTEa LTR MaLR 0 379 90 1 780 1033 181 98 5 chr9 25627573 25627778 -98448394 - URR1A DNA MER1_type -2 224 1 1 780 1447 265 57 30 chr9 25627778 25627869 -98448303 - MTEa LTR MaLR -290 89 1 1 780 442 294 138 19 chr9 25627883 25628416 -98447756 - L1MA8 LINE L1 0 6291 5690 1 780 274 242 0 0 chr9 25628990 25629052 -98447120 - L1MA8 LINE L1 -588 5703 5642 1 780 1240 241 81 51 chr9 25629061 25629394 -98446778 - ORR1D1 LTR MaLR 0 374 32 1 780 508 235 99 9 chr9 25629400 25629623 -98446549 - L1MA8 LINE L1 -658 5633 5391 1 780 780 172 0 0 chr9 25629693 25629862 -98446310 + GA-rich Low_complexity Low_complexity 2 170 0 1 780 186 206 0 0 chr9 25629875 25629938 -98446234 + GA-rich Low_complexity Low_complexity 2 64 0 1 780 585 143 0 19 chr9 25630089 25630196 -98445976 - Lx4A LINE L1 -3 7055 6951 1 780 2752 149 14 8 chr9 25630196 25630683 -98445489 - L1_Mm LINE L1 -194 5689 5200 1 780 3518 99 1 75 chr9 25630680 25630771 -98445401 - L1VL4 LINE L1 -1712 2202 2113 1 780 2970 70 5 25 chr9 25630771 25631179 -98444993 + MTB LTR MaLR 1 400 0 1 780 3518 132 73 44 chr9 25631179 25632602 -98443570 - L1VL4 LINE L1 -3769 2114 549 1 780 372 274 24 93 chr9 25632652 25632897 -98443275 + L1VL1 LINE L1 45 399 -6023 1 780 376 258 16 8 chr9 25632957 25633082 -98443090 + L1_Mus1 LINE L1 677 802 -5814 1 780 27998 115 8 17 chr9 25633091 25639006 -98437166 + L1_Mus1 LINE L1 725 6566 -1 1 780 36 23 0 0 chr9 25639100 25639143 -98437029 + AT_rich Low_complexity Low_complexity 1 43 0 1 780 3265 232 69 19 chr9 25639151 25640123 -98436049 - Lx9 LINE L1 -22 7622 6603 1 780 994 184 10 0 chr9 25640289 25640496 -98435676 - L1_Mur3 LINE L1 -6384 1328 1120 1 780 403 262 122 17 chr9 25640675 25640962 -98435210 - L1MC2 LINE L1 -34 6310 5994 1 780 1363 321 94 42 chr9 25642597 25643415 -98432757 + Lx8 LINE L1 6440 7300 -173 1 780 552 337 89 31 chr9 25643906 25644118 -98432054 + L1M3 LINE L1 3534 3745 -2401 1 780 5681 81 14 1 chr9 25644118 25644875 -98431297 - L1Md_F2 LINE L1 -14 6568 5802 1 780 933 299 88 7 chr9 25644875 25645400 -98430772 + L1M3 LINE L1 3744 4313 -1833 1 780 211 349 83 49 chr9 25645949 25646154 -98430018 - L2 LINE L2 -666 2753 2542 1 780 190 231 0 0 chr9 25646493 25646532 -98429640 + MIRc SINE MIR 212 250 -18 1 780 1521 286 28 3 chr9 25646817 25647178 -98428994 - MTEa LTR MaLR -7 372 3 1 780 393 22 0 0 chr9 25648392 25648438 -98427734 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 780 545 271 88 31 chr9 25649003 25649197 -98426975 - ORR1E LTR MaLR 0 359 155 1 780 5425 164 33 6 chr9 25649200 25650240 -98425932 - L1_Mm LINE L1 -96 5787 4720 1 780 237 31 0 0 chr9 25650237 25650269 -98425903 + Lx LINE L1 5777 5808 -846 1 780 38041 23 0 6 chr9 25650267 25656331 -98419841 - L1Md_T LINE L1 0 6582 561 1 780 5901 116 6 0 chr9 25656333 25657190 -98418982 + Lx LINE L1 5793 6654 0 1 780 382 253 32 106 chr9 25657209 25657343 -98418829 - ORR1E LTR MaLR -244 126 3 1 780 2287 131 19 93 chr9 25657423 25657852 -98418320 - RLTR9D LTR ERVK -6 397 1 1 780 412 133 13 0 chr9 25657852 25657927 -98418245 - ETnERV2-int LTR ERVK 0 7406 7331 1 780 8848 164 41 29 chr9 25658144 25660952 -98415220 - ETnERV2-int LTR ERVK -1179 6227 1653 1 780 6438 111 62 13 chr9 25660945 25662058 -98414114 - ETnERV2-int LTR ERVK -5164 2242 1075 1 780 756 107 0 0 chr9 25662058 25662170 -98414002 + (TTTTA)n Simple_repeat Simple_repeat 4 115 0 1 780 970 139 9 5 chr9 25662265 25662431 -98413741 - RLTR9B2 LTR ERVK -238 171 1 1 780 2942 61 200 9 chr9 25662814 25663244 -98412928 - RLTR1B LTR ERV1 0 512 1 1 780 40283 19 0 0 chr9 25663244 25670799 -98405373 - MMERGLN-int LTR ERV1 0 7556 1 1 780 2942 61 200 9 chr9 25670799 25671229 -98404943 - RLTR1B LTR ERV1 0 512 1 1 780 1605 155 34 97 chr9 25671445 25671796 -98404376 + ORR1A4 LTR MaLR 1 329 0 1 780 2472 194 57 20 chr9 25671833 25672342 -98403830 - RLTR11A LTR ERVK 0 528 1 1 780 425 242 45 38 chr9 25673047 25673180 -98402992 + RMER15 LTR ERVL 350 483 -92 1 780 439 257 9 27 chr9 25673622 25673734 -98402438 + MTEa LTR MaLR 256 365 -14 1 780 2633 196 113 4 chr9 25673818 25674508 -98401664 + Lx9 LINE L1 6873 7637 -7 1 780 1616 31 0 20 chr9 25674549 25674746 -98401426 + B2_Mm1t SINE B2 1 193 0 1 780 21 0 0 0 chr9 25674746 25674767 -98401405 + AT_rich Low_complexity Low_complexity 1 21 0 1 780 509 239 0 0 chr9 25675358 25675446 -98400726 - B1_Mus2 SINE Alu -56 91 4 1 780 398 233 0 75 chr9 25675366 25675459 -98400713 - MT2B LTR ERVL -361 240 155 1 780 1959 246 119 16 chr9 25675457 25676019 -98400153 - ORR1B1-int LTR MaLR -889 620 1 2 780 1792 159 94 62 chr9 25676023 25676397 -98399775 - ORR1B1 LTR MaLR -8 386 1 2 780 688 137 7 7 chr9 25676424 25676564 -98399608 + (TCCA)n Simple_repeat Simple_repeat 4 143 0 2 780 256 221 29 0 chr9 25677046 25677114 -98399058 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 2 780 305 180 0 0 chr9 25679185 25679235 -98396937 + ORR1B1 LTR MaLR 1 50 -344 2 780 6361 32 0 0 chr9 25679235 25679980 -98396192 + L1Md_A LINE L1 5838 6582 0 2 780 435 236 76 30 chr9 25680177 25680308 -98395864 + B1F1 SINE Alu 3 139 -10 2 780 1888 194 26 12 chr9 25680433 25680778 -98395394 + ORR1B1 LTR MaLR 45 394 0 2 780 796 213 215 170 chr9 25680873 25681314 -98394858 - RMER6B LTR ERVK 0 461 1 2 780 835 329 16 8 chr9 25682761 25683126 -98393046 + Lx6 LINE L1 7036 7403 -57 2 780 446 114 13 0 chr9 25683196 25683275 -98392897 + (GAAAA)n Simple_repeat Simple_repeat 3 82 0 2 780 240 35 0 0 chr9 25683358 25683387 -98392785 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2 780 13884 125 16 41 chr9 25683552 25686881 -98389291 + L1_Mus4 LINE L1 517 3761 -2122 2 780 3795 159 33 54 chr9 25686883 25687964 -98388208 - RLTR13D1 LTR ERVK 0 1023 1 2 97 11507 144 14 2 chr9 25687964 25690799 -98385373 + L1_Mus4 LINE L1 3758 6630 -6 2 781 1710 267 79 29 chr9 25690854 25691180 -98384992 + L1_Mur3 LINE L1 4282 4617 -1263 2 781 4385 91 5 30 chr9 25691180 25691814 -98384358 - L1_Mus1 LINE L1 -1 6566 5949 2 781 1710 267 79 29 chr9 25691814 25692236 -98383936 + L1_Mur3 LINE L1 4618 5067 -813 2 781 890 85 35 7 chr9 25693086 25693228 -98382944 - URR1A DNA MER1_type 0 226 81 2 781 21 36 0 0 chr9 25693420 25693448 -98382724 + AT_rich Low_complexity Low_complexity 1 28 0 2 781 501 99 0 0 chr9 25694182 25694263 -98381909 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 781 439 39 64 0 chr9 25694296 25694374 -98381798 + (CATA)n Simple_repeat Simple_repeat 1 83 0 2 781 979 162 27 5 chr9 25695339 25695525 -98380647 - B2_Mm2 SINE B2 -1 194 5 2 781 328 302 51 20 chr9 25695632 25695730 -98380442 - PB1D7 SINE Alu -1 119 19 2 781 183 139 0 0 chr9 25695807 25695843 -98380329 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 781 242 160 51 41 chr9 25695862 25695960 -98380212 + (TATAA)n Simple_repeat Simple_repeat 1 99 0 2 781 410 298 57 9 chr9 25696068 25696173 -98379999 - RSINE1 SINE B4 0 165 56 2 781 261 261 92 0 chr9 25696384 25696449 -98379723 - BC1_Mm scRNA scRNA -60 92 22 2 781 1329 86 32 0 chr9 25696776 25696963 -98379209 - B2_Mm1t SINE B2 0 193 1 2 781 373 290 58 58 chr9 25698042 25698196 -98377976 - MLT1D LTR MaLR 0 505 352 2 781 251 361 68 0 chr9 25698265 25698398 -98377774 - MTE-int LTR MaLR -39 1541 1400 2 781 232 345 139 54 chr9 25698477 25698958 -98377214 - MLT1D-int LTR MaLR -253 1236 715 2 781 198 0 0 0 chr9 25699172 25699194 -98376978 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 781 1719 148 49 16 chr9 25699973 25700091 -98376081 - Lx LINE L1 -3 6651 6535 2 781 195 42 0 0 chr9 25700091 25700115 -98376057 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 2 781 1719 148 49 16 chr9 25700115 25700304 -98375868 - Lx LINE L1 -120 6534 6335 2 781 464 92 0 0 chr9 25700305 25700370 -98375802 - MusHAL1 LINE L1 -3251 103 39 2 781 1726 271 40 23 chr9 25700576 25701181 -98374991 - L1_Rod LINE L1 -6252 920 306 2 781 488 336 0 0 chr9 25701547 25701675 -98374497 - B1_Mur1 SINE Alu -13 136 9 2 781 436 287 29 101 chr9 25701774 25702119 -98374053 - L1M2 LINE L1 -682 5615 5296 2 781 469 199 74 21 chr9 25702141 25702331 -98373841 - RMER17C LTR ERVK -135 275 76 2 781 358 325 23 53 chr9 25702377 25702510 -98373662 + ORR1D2 LTR MaLR 85 213 -157 2 781 768 238 164 46 chr9 25703116 25703482 -98372690 - RLTR9E LTR ERVK 0 409 1 2 781 262 342 95 17 chr9 25703762 25703878 -98372294 + LTR53 LTR ERVL 305 429 -90 2 781 276 318 82 0 chr9 25704367 25704477 -98371695 + MER5B DNA MER1_type 60 178 0 2 781 313 298 138 85 chr9 25704485 25704709 -98371463 - MER106A DNA MER1_type 0 236 1 2 781 333 239 68 0 chr9 25704866 25704954 -98371218 + ORR1D2 LTR MaLR 280 373 -46 2 781 304 329 50 23 chr9 25705112 25705373 -98370799 - Lx9 LINE L1 -180 7464 7197 2 781 899 261 15 0 chr9 25705395 25705598 -98370574 + MTD LTR MaLR 6 211 -210 2 781 1179 204 14 9 chr9 25705658 25705881 -98370291 + MTD LTR MaLR 196 419 0 2 781 495 273 55 0 chr9 25706002 25706112 -98370060 - RSINE1 SINE B4 -47 118 3 2 781 301 255 127 0 chr9 25706537 25706694 -98369478 - L1MD3 LINE L1 -25 7970 7794 2 781 400 211 8 68 chr9 25706748 25706865 -98369307 - L1MD3 LINE L1 -1153 6842 6733 2 781 296 297 34 0 chr9 25707240 25707358 -98368814 - L1MD3 LINE L1 -2285 5710 5589 2 781 696 89 0 0 chr9 25707380 25707481 -98368691 + (GA)n Simple_repeat Simple_repeat 1 101 0 2 781 577 264 61 35 chr9 25707641 25707802 -98368370 - L1M2 LINE L1 -2290 3853 3690 2 781 369 62 0 0 chr9 25707802 25707850 -98368322 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 781 577 264 61 36 chr9 25707850 25707918 -98368254 - L1M2 LINE L1 -2454 3689 3581 2 781 903 67 0 0 chr9 25707918 25708037 -98368135 + (TCC)n Simple_repeat Simple_repeat 2 120 0 2 781 532 283 56 65 chr9 25708037 25708145 -98368027 - L1M2 LINE L1 -2300 3580 3487 2 781 261 0 0 0 chr9 25708145 25708174 -98367998 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2 781 532 283 56 65 chr9 25708174 25708314 -98367858 - L1M2 LINE L1 -2394 3486 3347 2 781 919 198 108 0 chr9 25708330 25708552 -98367620 - Lx3C LINE L1 -2 6974 6729 2 781 4637 137 18 39 chr9 25708545 25710003 -98366169 - L1VL2 LINE L1 -2167 1448 27 2 781 286 206 114 29 chr9 25710018 25710123 -98366049 - L1_Rod LINE L1 -3156 2691 2578 2 781 486 246 8 16 chr9 25710121 25710249 -98365923 + L1_Rod LINE L1 3953 4079 -1768 2 781 265 202 337 0 chr9 25710261 25710439 -98365733 - Lx9 LINE L1 -2 7642 7405 2 781 1254 254 26 67 chr9 25710443 25710861 -98365311 + Lx9 LINE L1 7011 7411 -233 2 781 1619 269 80 45 chr9 25710863 25711129 -98365043 + L1_Rod LINE L1 4071 4373 -1474 2 781 261 0 0 0 chr9 25711129 25711158 -98365014 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 2 781 1619 269 80 45 chr9 25711158 25711878 -98364294 + L1_Rod LINE L1 4374 5091 -756 2 781 272 262 9 18 chr9 25711867 25711976 -98364196 + Lx9 LINE L1 7518 7625 -19 2 781 345 219 42 48 chr9 25712064 25712232 -98363940 + (TATAA)n Simple_repeat Simple_repeat 5 171 0 2 781 900 251 41 85 chr9 25712238 25712699 -98363473 + L1_Rod LINE L1 5086 5526 -321 2 781 8613 172 6 39 chr9 25712702 25714542 -98361630 + L1_Mur2 LINE L1 4051 5830 -47 2 781 29121 89 23 10 chr9 25714547 25719593 -98356579 + L1Md_F2 LINE L1 476 5586 -297 2 781 7237 84 1 13 chr9 25719593 25720598 -98355574 + L1Md_F2 LINE L1 5587 6579 -3 2 781 6423 167 13 3 chr9 25720614 25721751 -98354421 + Lx2 LINE L1 5845 6993 -4 2 781 367 250 0 11 chr9 25721781 25721870 -98354302 + Lx7 LINE L1 5589 5676 -2020 2 781 268 317 109 51 chr9 25722782 25722982 -98353190 + MER34A1 LTR ERV1 13 220 -351 2 781 244 312 149 31 chr9 25723057 25723252 -98352920 + MER34A1 LTR ERV1 351 568 -3 2 781 2041 231 55 25 chr9 25723422 25723933 -98352239 - ORR1D1-int LTR MaLR -844 526 1 2 781 1382 218 102 24 chr9 25723936 25724269 -98351903 - ORR1D1 LTR MaLR -11 363 5 2 781 1153 75 0 0 chr9 25724756 25724903 -98351269 - B1_Mm SINE Alu 0 147 1 2 781 381 275 42 13 chr9 25725182 25725336 -98350836 + L1MC5 LINE L1 6694 6907 -1135 2 781 22 56 0 0 chr9 25725515 25725551 -98350621 + AT_rich Low_complexity Low_complexity 1 36 0 2 781 1461 200 158 6 chr9 25725856 25726198 -98349974 - ORR1B1 LTR MaLR 0 394 1 2 781 989 204 113 70 chr9 25726208 25726535 -98349637 - ORR1B1-int LTR MaLR -45 1918 1578 2 781 1093 215 23 0 chr9 25726510 25726724 -98349448 - ORR1B1-int LTR MaLR -1290 219 1 2 781 2040 173 45 8 chr9 25726724 25727102 -98349070 - ORR1B1 LTR MaLR 0 394 3 2 781 24 53 0 0 chr9 25727599 25727637 -98348535 + AT_rich Low_complexity Low_complexity 1 38 0 2 781 364 267 28 19 chr9 25727748 25727855 -98348317 - Lx9 LINE L1 -388 7256 7149 2 781 333 0 0 0 chr9 25727909 25727946 -98348226 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 781 405 0 0 0 chr9 25727946 25727990 -98348182 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 781 2931 81 8 2 chr9 25728027 25728425 -98347747 + MTB LTR MaLR 1 400 0 2 781 6372 120 12 70 chr9 25728425 25729589 -98346583 + MTB-int LTR MaLR 1 1096 -2 2 781 2904 89 5 2 chr9 25729595 25729990 -98346182 + MTB LTR MaLR 5 400 0 2 781 1333 212 174 18 chr9 25729996 25730431 -98345741 - Lx9 LINE L1 -1670 5974 5453 2 781 35 54 0 0 chr9 25730634 25730690 -98345482 + AT_rich Low_complexity Low_complexity 1 56 0 2 781 303 28 0 0 chr9 25730844 25730880 -98345292 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 781 245 250 14 14 chr9 25730881 25730954 -98345218 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 781 381 308 8 8 chr9 25731684 25731802 -98344370 - B1_Mur2 SINE Alu -13 136 19 2 781 1699 249 155 68 chr9 25731958 25732430 -98343742 - RLTR22_Mur LTR ERVK 0 1848 1321 2 781 471 130 0 0 chr9 25732430 25732507 -98343665 + (TA)n Simple_repeat Simple_repeat 2 78 0 2 781 1699 249 155 68 chr9 25732507 25732813 -98343359 - RLTR22_Mur LTR ERVK -528 1320 1002 2 781 248 315 66 6 chr9 25732850 25733016 -98343156 - L1_Rod LINE L1 -6533 639 464 2 781 27 0 0 0 chr9 25735149 25735176 -98340996 + AT_rich Low_complexity Low_complexity 1 27 0 2 781 2358 229 53 43 chr9 25735264 25735516 -98340656 - Lx5 LINE L1 -7 7043 6795 2 781 1457 238 72 75 chr9 25735516 25736102 -98340070 - RLTR31A_Mm LTR ERVK 0 584 1 2 781 4680 245 61 137 chr9 25736102 25738427 -98337745 - Lx5 LINE L1 -256 6794 4424 2 781 336 292 106 0 chr9 25738427 25738540 -98337632 - RMER4B LTR ERVK -118 467 343 2 781 4680 245 61 137 chr9 25738540 25738668 -98337504 - Lx5 LINE L1 -2627 4423 4294 2 781 834 161 39 0 chr9 25738668 25738823 -98337349 - RMER4B LTR ERVK -408 177 17 2 781 4680 245 61 137 chr9 25738823 25739844 -98336328 - Lx5 LINE L1 -256 4293 3250 2 781 12592 157 18 17 chr9 25739846 25743155 -98333017 - Lx4A LINE L1 -2 7056 3732 2 781 297 0 0 0 chr9 25743175 25743208 -98332964 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2 781 5187 222 94 2 chr9 25743209 25744402 -98331770 - Lx4B LINE L1 -21 7037 5735 2 781 1553 128 39 0 chr9 25744405 25744662 -98331510 - Lx4A LINE L1 -2129 3748 3482 2 781 672 98 0 0 chr9 25744673 25744775 -98331397 + (TCC)n Simple_repeat Simple_repeat 3 104 0 2 781 535 245 0 0 chr9 25744852 25744958 -98331214 - B3 SINE B2 -109 107 2 2 781 3510 129 29 5 chr9 25744959 25745297 -98330875 - Lx4A LINE L1 -2402 3475 3138 2 781 204 40 0 0 chr9 25745297 25745322 -98330850 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 781 3510 129 29 5 chr9 25745322 25745599 -98330573 - Lx4A LINE L1 -2740 3137 2846 2 781 4479 141 49 90 chr9 25745593 25745780 -98330392 - Lx4A LINE L1 -3657 2220 2065 2 781 342 0 0 0 chr9 25745780 25745818 -98330354 + (TGG)n Simple_repeat Simple_repeat 1 38 0 2 781 4479 178 41 76 chr9 25745818 25747356 -98328816 - Lx4A LINE L1 -3813 2064 507 2 781 9049 189 31 10 chr9 25747360 25748560 -98327612 - L1_Mur2 LINE L1 -2600 3277 2064 2 781 438 69 0 0 chr9 25748560 25748618 -98327554 + (TAG)n Simple_repeat Simple_repeat 1 58 0 2 781 9049 190 31 10 chr9 25748618 25749515 -98326657 - L1_Mur2 LINE L1 -3814 2063 1137 2 781 1365 306 57 39 chr9 25749524 25750211 -98325961 + Lx9 LINE L1 5647 6343 -1301 2 781 405 0 0 0 chr9 25750211 25750256 -98325916 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 781 522 0 0 0 chr9 25750256 25750313 -98325859 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 781 1365 306 57 39 chr9 25750313 25750471 -98325701 + Lx9 LINE L1 6344 6507 -1137 2 781 1839 237 91 7 chr9 25750491 25751301 -98324871 + Lx9 LINE L1 6721 7598 -46 2 781 377 300 30 0 chr9 25751301 25751401 -98324771 - MTE2a LTR MaLR -257 122 20 2 781 204 40 0 0 chr9 25751458 25751483 -98324689 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 2 781 544 229 65 8 chr9 25751488 25751626 -98324546 + ORR1E-int LTR MaLR 1224 1345 -25 2 781 248 197 48 32 chr9 25751626 25751689 -98324483 + ORR1E LTR MaLR 1 64 -295 2 781 403 368 18 0 chr9 25752092 25752255 -98323917 + ORR1E LTR MaLR 53 218 -141 2 781 619 264 103 42 chr9 25752413 25752674 -98323498 + RMER20B LTR ERVK 140 416 -211 2 781 2695 47 0 0 chr9 25752868 25753206 -98322966 - ORR1A1 LTR MaLR -8 338 1 2 781 533 294 79 58 chr9 25753217 25753250 -98322922 - L1_Rod LINE L1 -3230 2617 2587 3 781 204 40 0 0 chr9 25753250 25753275 -98322897 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 781 533 294 79 58 chr9 25753275 25753721 -98322451 - L1_Rod LINE L1 -3261 2586 2128 3 781 366 61 0 0 chr9 25753721 25753770 -98322402 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 781 924 83 0 0 chr9 25753770 25753913 -98322259 + (GA)n Simple_repeat Simple_repeat 1 144 0 3 781 234 0 0 0 chr9 25754196 25754222 -98321950 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 781 271 65 21 21 chr9 25754222 25754268 -98321904 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 3 781 225 0 0 0 chr9 25754268 25754293 -98321879 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 781 1430 266 59 8 chr9 25754295 25754667 -98321505 + Lx5 LINE L1 6655 7045 -5 3 781 356 273 97 74 chr9 25754718 25755359 -98320813 - L1_Mur3 LINE L1 -4116 1764 1102 3 781 719 206 7 0 chr9 25755698 25755834 -98320338 - B1_Mus2 SINE Alu -1 146 10 3 781 1274 327 95 28 chr9 25756247 25756828 -98319344 + MTE-int LTR MaLR 947 1566 -14 3 781 387 364 73 45 chr9 25757911 25758334 -98317838 + RMER5 LTR ERV1 70 504 -30 3 781 655 322 91 61 chr9 25758352 25758891 -98317281 - L1M2 LINE L1 -1886 4257 3703 3 781 2987 93 5 2 chr9 25759069 25759487 -98316685 - L1_Mus3 LINE L1 -6 6632 6214 3 781 296 24 0 24 chr9 25759711 25759753 -98316419 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 781 980 53 7 36 chr9 25759773 25759910 -98316262 - B1_Mm SINE Alu 0 147 15 3 781 1015 309 42 80 chr9 25760033 25760582 -98315590 - MT2A LTR ERVL -3 530 3 3 781 356 127 0 0 chr9 25760584 25760639 -98315533 - MERVL-int LTR ERVL 0 5761 5707 3 781 262 197 0 43 chr9 25760640 25760709 -98315463 - ORR1A3-int LTR MaLR -1324 639 574 3 781 895 146 35 35 chr9 25760877 25761076 -98315096 + Lx LINE L1 6449 6647 -7 3 781 19074 246 54 30 chr9 25761076 25766210 -98309962 - MERVL-int LTR ERVL -133 5352 98 3 781 1153 218 196 109 chr9 25766210 25766633 -98309539 - MT2A LTR ERVL -73 460 1 3 781 312 70 0 0 chr9 25766933 25766976 -98309196 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 781 402 21 0 0 chr9 25766976 25767022 -98309150 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 781 25 0 0 0 chr9 25767060 25767085 -98309087 + AT_rich Low_complexity Low_complexity 1 25 0 3 781 3385 77 5 0 chr9 25767186 25767627 -98308545 + L1_Mus1 LINE L1 6125 6567 0 3 781 420 149 115 0 chr9 25769827 25769914 -98306258 - RMER1C Other Other -4 1338 1242 3 781 596 284 63 19 chr9 25769925 25770130 -98306042 - B3 SINE B2 0 216 3 3 781 216 0 0 0 chr9 25770814 25770838 -98305334 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 781 20231 74 7 3 chr9 25770864 25774310 -98301862 - L1Md_F3 LINE L1 0 6584 3126 3 781 31553 17 1 6 chr9 25774295 25780257 -98295915 - L1Md_A LINE L1 0 6582 663 3 781 12203 77 3 17 chr9 25780249 25782130 -98294042 - L1Md_F3 LINE L1 -2712 3171 1318 3 781 242 29 29 0 chr9 25783145 25783180 -98292992 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 3 781 267 297 33 33 chr9 25783727 25783849 -98292323 + L1M2 LINE L1 5712 5833 -479 3 781 244 268 0 0 chr9 25783841 25783923 -98292249 + L1MB1 LINE L1 6036 6117 -51 3 781 30 0 0 0 chr9 25784010 25784040 -98292132 + AT_rich Low_complexity Low_complexity 1 30 0 3 781 306 132 0 0 chr9 25785068 25785121 -98291051 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 3 781 295 142 18 54 chr9 25786898 25787010 -98289162 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 781 21 36 0 0 chr9 25787811 25787839 -98288333 + AT_rich Low_complexity Low_complexity 1 28 0 3 781 185 235 39 19 chr9 25788485 25788537 -98287635 + L2 LINE L2 93 145 -3274 3 781 897 141 222 0 chr9 25789583 25789768 -98286404 - URR1A DNA MER1_type 0 226 1 3 781 2032 60 15 4 chr9 25790240 25790508 -98285664 + L1_Mus1 LINE L1 6297 6567 0 3 781 217 347 122 0 chr9 25790538 25790636 -98285536 + PB1D7 SINE Alu 3 112 -8 3 781 1578 212 18 80 chr9 25791225 25791549 -98284623 + ORR1C1 LTR MaLR 4 318 -60 3 781 360 0 0 0 chr9 25791549 25791589 -98284583 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 781 1578 212 18 80 chr9 25791589 25791664 -98284508 + ORR1C1 LTR MaLR 319 378 0 3 781 1726 168 59 3 chr9 25792305 25792645 -98283527 - RLTR15 LTR ERVK 0 359 1 3 781 1228 159 18 0 chr9 25792843 25793063 -98283109 + URR1B DNA MER1_type 1 224 -1 3 781 2655 184 0 53 chr9 25793408 25793914 -98282258 - RMER20B LTR ERVK -148 479 1 3 781 1673 182 25 133 chr9 25793984 25794061 -98282111 - ORR1B2 LTR MaLR -5 362 328 3 781 1066 115 0 0 chr9 25794061 25794209 -98281963 - B1_Mus1 SINE Alu 0 148 1 3 781 1673 182 25 133 chr9 25794209 25794537 -98281635 - ORR1B2 LTR MaLR -40 327 1 3 781 201 293 192 0 chr9 25794581 25794680 -98281492 - MIRc SINE MIR -115 153 36 3 781 1014 256 174 72 chr9 25795533 25796176 -98279996 + RMER17A2 LTR ERVK 3 711 -195 3 781 6527 94 37 1 chr9 25796187 25797197 -98278975 - L1Md_F2 LINE L1 0 6582 5547 3 781 7759 85 3 2 chr9 25797215 25798330 -98277842 + L1Md_F2 LINE L1 4414 5529 -354 3 781 896 247 61 68 chr9 25798330 25798625 -98277547 + RMER13B LTR ERVK 612 904 -4 3 781 26118 28 1 0 chr9 25798933 25802844 -98273328 - L1Md_T LINE L1 -1 6581 2669 3 781 7333 27 0 0 chr9 25802836 25803767 -98272405 + L1Md_T LINE L1 1709 2639 -3244 3 781 1104 252 18 24 chr9 25806121 25806440 -98269732 - RMER19C LTR ERVK -238 664 318 3 781 5208 261 35 25 chr9 25806481 25808057 -98268115 - Lx7 LINE L1 -440 7256 5665 3 781 347 285 47 29 chr9 25808081 25808251 -98267921 - Lx7 LINE L1 -6762 966 794 3 781 646 279 39 13 chr9 25810010 25810166 -98266006 - RSINE1 SINE B4 0 165 6 3 781 25 31 0 0 chr9 25810194 25810226 -98265946 + AT_rich Low_complexity Low_complexity 1 32 0 3 781 800 57 9 0 chr9 25810927 25811033 -98265139 - B1_Mus2 SINE Alu -1 146 40 3 781 2467 162 155 6 chr9 25811212 25811721 -98264451 - RMER4B LTR ERVK 0 585 1 3 781 8393 164 28 45 chr9 25811820 25814674 -98261498 + Lx5 LINE L1 650 4816 -1061 3 781 3555 161 62 10 chr9 25814675 25815644 -98260528 + Lx5 LINE L1 5373 6391 -659 3 781 1624 178 37 37 chr9 25815644 25816020 -98260152 - RLTR9A LTR ERVK 0 383 9 3 781 305 266 24 37 chr9 25816007 25816089 -98260083 + MTE2a LTR MaLR 290 370 -9 3 781 1677 121 91 69 chr9 25816107 25816426 -98259746 + ORR1A4 LTR MaLR 3 328 -1 3 781 330 359 46 56 chr9 25816846 25817041 -98259131 - RLTR26 LTR ERVK -287 355 163 3 781 30 0 0 0 chr9 25820194 25820224 -98255948 + AT_rich Low_complexity Low_complexity 1 30 0 3 781 3124 34 58 0 chr9 25820308 25820688 -98255484 + L1Md_T LINE L1 6181 6582 0 3 781 2637 80 29 5 chr9 25820704 25821080 -98255092 + L1_Mus4 LINE L1 6245 6629 -7 3 97 252 0 0 0 chr9 25821181 25821209 -98254963 + (T)n Simple_repeat Simple_repeat 1 28 0 3 782 940 117 20 7 chr9 25821209 25821355 -98254817 - B1_Mus1 SINE Alu 0 148 1 3 782 1512 133 52 32 chr9 25821556 25821866 -98254306 - MT-int LTR MaLR -230 868 631 3 782 342 45 0 0 chr9 25821866 25821910 -98254262 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 782 321 68 0 0 chr9 25821910 25821953 -98254219 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 782 329 256 145 12 chr9 25822367 25822533 -98253639 - Lx9 LINE L1 -1679 5965 5778 3 782 28358 92 5 2 chr9 25822521 25823803 -98252369 - L1_Mus2 LINE L1 0 6566 5301 3 782 1170 144 5 0 chr9 25823803 25823998 -98252174 - L1_Mus1 LINE L1 0 6567 6372 3 782 28358 144 23 28 chr9 25823998 25829033 -98247139 - L1_Mus2 LINE L1 -583 5300 272 3 782 3008 242 64 63 chr9 25829054 25830296 -98245876 - Lx9 LINE L1 -81 5766 4524 3 782 770 243 68 55 chr9 25830337 25830418 -98245754 - Lx9 LINE L1 -1567 4280 4195 3 782 486 0 0 0 chr9 25830418 25830472 -98245700 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 782 770 243 68 55 chr9 25830472 25830499 -98245673 - Lx9 LINE L1 -1653 4194 4166 3 782 3474 171 49 22 chr9 25830499 25831173 -98244999 + RLTR17 LTR ERVK 1 692 0 3 782 770 243 68 55 chr9 25831173 25831372 -98244800 - Lx9 LINE L1 -1682 4165 3969 3 782 1098 303 18 9 chr9 25831382 25831725 -98244447 + Lx9 LINE L1 6382 6727 -917 3 782 3063 48 0 0 chr9 25831768 25832125 -98244047 + IAPEY2_LTR LTR ERVK 1 357 0 3 782 676 185 31 31 chr9 25832125 25832287 -98243885 + IAPEY3-int LTR ERVK 1 162 -7518 3 782 8712 125 13 41 chr9 25832287 25833788 -98242384 + IAPEY3-int LTR ERVK 524 1982 -5698 3 782 3304 78 9 0 chr9 25833765 25834213 -98241959 + IAPEY3-int LTR ERVK 2238 2689 -4991 3 782 444 68 0 0 chr9 25834206 25834265 -98241907 + IAPEY3-int LTR ERVK 4852 4910 -2770 3 782 3272 111 14 27 chr9 25834265 25834998 -98241174 + IAPEY3-int LTR ERVK 6907 7581 0 3 782 3104 39 0 0 chr9 25834998 25835355 -98240817 + IAPEY2_LTR LTR ERVK 1 357 0 3 782 734 213 30 0 chr9 25835355 25835519 -98240653 + Lx9 LINE L1 6770 6938 -706 3 782 270 0 0 0 chr9 25835605 25835635 -98240537 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 782 387 0 0 0 chr9 25835635 25835677 -98240495 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 782 499 283 12 12 chr9 25835887 25836055 -98240117 + L1_Mur3 LINE L1 280 447 -7265 3 782 257 214 0 0 chr9 25836062 25836118 -98240054 + Lx6 LINE L1 6971 7026 -434 3 782 2001 183 41 5 chr9 25836118 25836486 -98239686 - MTC LTR MaLR 0 421 41 3 782 507 184 0 0 chr9 25836511 25836598 -98239574 + Lx6 LINE L1 7033 7119 -341 3 782 348 88 0 0 chr9 25836607 25836664 -98239508 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 782 391 269 35 18 chr9 25836664 25836834 -98239338 + Lx7 LINE L1 7375 7547 -149 3 782 204 111 0 0 chr9 25836858 25836894 -98239278 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 3 782 1913 242 50 52 chr9 25837002 25837560 -98238612 + RMER19C LTR ERVK 53 609 -2 3 782 1152 277 106 42 chr9 25837669 25838096 -98238076 + Lx8 LINE L1 5087 5544 -303 3 782 2318 145 109 27 chr9 25838096 25838508 -98237664 - RLTR41 LTR ERV1 0 446 1 3 782 1152 278 100 38 chr9 25838508 25838829 -98237343 + Lx8 LINE L1 5545 5915 -1558 3 782 473 275 0 8 chr9 25839302 25839423 -98236749 + Lx8 LINE L1 6223 6342 -1131 3 782 376 241 35 63 chr9 25839491 25839633 -98236539 + RLTR25B LTR ERVK 728 865 -163 3 782 838 256 217 21 chr9 25839633 25840104 -98236068 + Lx8 LINE L1 6587 7149 -324 3 782 5672 96 16 34 chr9 25840104 25841548 -98234624 + L1_Mus1 LINE L1 409 1825 -4058 3 782 19624 97 16 3 chr9 25841552 25845232 -98230940 + L1_Mus1 LINE L1 2838 6567 0 3 782 578 310 52 27 chr9 25845240 25845568 -98230604 + Lx8 LINE L1 7136 7471 -2 3 782 1249 47 0 71 chr9 25845876 25846060 -98230112 + L1Md_F3 LINE L1 6399 6569 -15 3 782 341 339 52 5 chr9 25846161 25846378 -98229794 + L1MDa LINE L1 2445 2671 -3863 3 782 4883 167 55 41 chr9 25846397 25847411 -98228761 - RLTR25B LTR ERVK 0 1028 1 3 782 266 163 0 0 chr9 25847493 25847536 -98228636 + A-rich Low_complexity Low_complexity 1 43 0 3 782 255 290 18 20 chr9 25847765 25847893 -98228279 - L1M4c LINE L1 -513 5901 5777 3 782 306 366 0 0 chr9 25849757 25849858 -98226314 + GA-rich Low_complexity Low_complexity 6 106 0 3 782 467 302 37 52 chr9 25850760 25851107 -98225065 - L1M4c LINE L1 -1077 5305 4950 3 782 582 274 63 45 chr9 25851115 25851444 -98224728 - MLT1C LTR MaLR -8 459 58 3 782 541 327 62 31 chr9 25851447 25851832 -98224340 - L1M4c LINE L1 -1433 4949 4553 3 782 232 355 5 26 chr9 25851844 25852038 -98224134 - L1M4c LINE L1 -1897 4485 4296 3 782 1941 244 35 44 chr9 25852041 25852581 -98223591 - RMER19C LTR ERVK 0 611 77 3 782 228 206 96 0 chr9 25852596 25852680 -98223492 - L1M4c LINE L1 -2083 4299 4211 3 782 192 97 0 0 chr9 25853198 25853229 -98222943 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 782 220 274 0 14 chr9 25853229 25853294 -98222878 + CT-rich Low_complexity Low_complexity 2 66 0 4 782 396 0 0 0 chr9 25853295 25853339 -98222833 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 782 727 149 74 0 chr9 25853626 25853747 -98222425 + B1_Mur4 SINE Alu 1 130 -20 4 782 397 271 88 35 chr9 25853829 25854326 -98221846 - L1M4c LINE L1 -2932 3444 2922 3 782 268 278 89 0 chr9 25854354 25854444 -98221728 - Lx7 LINE L1 -410 7286 7189 4 782 189 147 0 0 chr9 25854482 25854516 -98221656 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 4 782 338 346 9 9 chr9 25854844 25854952 -98221220 - MER2B DNA MER2_type -2 334 227 4 782 597 297 63 34 chr9 25854975 25855449 -98220723 - L1M4c LINE L1 -3457 2925 2438 3 782 1716 199 72 3 chr9 25855523 25855871 -98220301 - ORR1C1 LTR MaLR 0 378 7 4 782 306 336 74 7 chr9 25855891 25856026 -98220146 - B3A SINE B2 -49 149 6 4 782 22 70 0 0 chr9 25856408 25856451 -98219721 + AT_rich Low_complexity Low_complexity 1 43 0 4 782 677 269 53 168 chr9 25856475 25856945 -98219227 + RLTR23 LTR ERV1 11 426 -4 4 782 463 329 83 36 chr9 25856991 25857770 -98218402 - L1M4c LINE L1 -4519 1865 1050 3 782 2387 244 42 2 chr9 25857948 25858527 -98217645 + Lx9 LINE L1 6424 7025 -619 4 782 284 179 36 146 chr9 25858602 25858739 -98217433 - Lx9 LINE L1 -20 7624 7503 4 782 294 29 0 0 chr9 25858740 25858775 -98217397 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 782 315 0 0 0 chr9 25858775 25858809 -98217363 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 782 223 215 43 58 chr9 25858860 25858929 -98217243 - ID4_ SINE ID -13 70 3 4 782 225 0 0 0 chr9 25859261 25859286 -98216886 + (T)n Simple_repeat Simple_repeat 1 25 0 4 782 592 318 70 14 chr9 25860672 25860956 -98215216 - Lx8 LINE L1 -349 7124 6825 4 782 25 0 0 0 chr9 25861989 25862014 -98214158 + AT_rich Low_complexity Low_complexity 1 25 0 4 782 204 279 115 0 chr9 25862221 25862282 -98213890 - MIRc SINE MIR -154 114 47 4 782 38 22 0 0 chr9 25862367 25862412 -98213760 + AT_rich Low_complexity Low_complexity 1 45 0 4 782 462 392 18 48 chr9 25863139 25863471 -98212701 + MLT1H-int LTR MaLR 21 342 -1067 4 782 6432 135 44 27 chr9 25863618 25864731 -98211441 - Lx3C LINE L1 -8 6968 5837 4 782 246 258 173 67 chr9 25864886 25864990 -98211182 + PB1D10 SINE Alu 1 115 -2 4 782 372 143 36 0 chr9 25865235 25865319 -98210853 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 782 265 323 28 83 chr9 25865402 25865547 -98210625 + MLT1H-int LTR MaLR 737 873 -616 4 782 567 0 0 0 chr9 25865948 25866011 -98210161 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 782 285 118 0 0 chr9 25866012 25866063 -98210109 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 782 2106 283 55 6 chr9 25866087 25866772 -98209400 - Lx8 LINE L1 -226 7247 6529 4 782 339 282 151 27 chr9 25867290 25867436 -98208736 - Lx8 LINE L1 -1137 6336 6173 4 782 338 61 0 20 chr9 25867439 25867489 -98208683 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 782 33 25 0 0 chr9 25867793 25867833 -98208339 + AT_rich Low_complexity Low_complexity 1 40 0 4 782 3048 84 5 0 chr9 25867910 25868315 -98207857 - MTB_Mm LTR MaLR 0 407 1 4 782 280 320 104 65 chr9 25869790 25870076 -98206096 + MLT2B1 LTR ERVL 5 297 -223 4 782 25 0 0 0 chr9 25870133 25870158 -98206014 + AT_rich Low_complexity Low_complexity 1 25 0 4 782 1938 135 0 7 chr9 25870158 25870449 -98205723 - Lx4A LINE L1 0 7058 6770 4 782 201 354 0 35 chr9 25871611 25871696 -98204476 + GA-rich Low_complexity Low_complexity 5 86 0 4 782 1748 236 147 31 chr9 25871743 25872562 -98203610 + Lx9 LINE L1 5031 5974 -1670 4 782 780 285 52 37 chr9 25872652 25872976 -98203196 + Lx9 LINE L1 6354 6682 -962 4 782 198 220 0 0 chr9 25873060 25873119 -98203053 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 782 459 100 0 0 chr9 25873766 25873836 -98202336 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 782 2091 201 28 74 chr9 25873903 25874514 -98201658 - RLTR31A_Mm LTR ERVK 0 584 2 4 782 615 323 88 8 chr9 25875186 25875436 -98200736 + RMER15 LTR ERVL 294 563 -12 4 782 312 274 26 17 chr9 25875452 25875567 -98200605 + RMER15-int LTR ERVL 10 125 -4874 4 782 3631 114 26 32 chr9 25875880 25876450 -98199722 + RMER2 LTR ERV1 1 567 0 4 782 1194 252 32 116 chr9 25876450 25876918 -98199254 - RMER19A LTR ERVK -2 609 220 4 782 22 0 0 0 chr9 25876920 25876942 -98199230 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 2830 169 20 10 chr9 25876945 25877448 -98198724 - Lx2B LINE L1 -5 6995 6488 4 782 7663 35 0 0 chr9 25877457 25878852 -98197320 - L1Md_T LINE L1 0 6582 5188 4 782 1369 135 17 13 chr9 25878848 25879080 -98197092 - Lx2B LINE L1 -492 6508 6276 4 782 1061 132 24 0 chr9 25879080 25879247 -98196925 + B2_Mm2 SINE B2 25 195 0 4 782 940 164 17 105 chr9 25879277 25879477 -98196695 - RMER19A LTR ERVK -516 221 27 4 782 212 0 36 0 chr9 25879477 25879505 -98196667 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 782 940 164 17 105 chr9 25879505 25879542 -98196630 - RMER19A LTR ERVK -711 26 5 4 782 317 325 82 29 chr9 25879752 25879958 -98196214 + L1MEg LINE L1 1336 1552 -4532 4 782 882 252 64 47 chr9 25879973 25880423 -98195749 + L1_Mur3 LINE L1 2120 2577 -3303 4 782 348 64 0 0 chr9 25880531 25880578 -98195594 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 782 507 237 68 78 chr9 25880578 25880784 -98195388 + Lx8 LINE L1 6191 6394 -1079 4 782 250 324 29 10 chr9 25881820 25881923 -98194249 + MIRb SINE MIR 69 173 -95 4 782 1098 164 30 12 chr9 25881955 25882206 -98193966 - RMER16 LTR ERVK 0 533 243 4 782 1665 36 0 0 chr9 25882254 25882446 -98193726 - B2_Mm1t SINE B2 0 193 2 4 782 584 259 0 26 chr9 25882776 25882927 -98193245 + B1_Mur1 SINE Alu 1 147 -2 4 782 330 385 45 29 chr9 25883855 25884101 -98192071 + MIRc SINE MIR 2 251 -17 4 782 1500 244 88 3 chr9 25884610 25884996 -98191176 - MTD LTR MaLR 0 419 1 4 782 557 283 63 30 chr9 25885030 25885267 -98190905 - B4A SINE B4 -46 246 2 4 782 319 343 86 33 chr9 25885275 25885519 -98190653 - L1M4 LINE L1 -4933 1713 1457 4 782 302 308 75 25 chr9 25885550 25885710 -98190462 - L1M4 LINE L1 -5481 1061 894 4 782 248 366 32 0 chr9 25885848 25885941 -98190231 + ID_B1 SINE B4 81 176 -48 4 782 417 317 10 0 chr9 25885862 25885963 -98190209 + PB1D10 SINE Alu 16 117 0 4 782 847 321 87 19 chr9 25886237 25887074 -98189098 - L1M2 LINE L1 -959 5184 4291 4 782 1014 265 22 4 chr9 25887123 25887396 -98188776 - Lx6 LINE L1 -8 7452 7175 4 782 340 342 26 31 chr9 25887410 25887636 -98188536 - L1M4 LINE L1 -1914 4232 4008 4 782 384 40 0 0 chr9 25887639 25887689 -98188483 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 782 429 115 0 0 chr9 25887721 25887799 -98188373 + (GTTTG)n Simple_repeat Simple_repeat 3 80 0 4 782 334 338 66 31 chr9 25888000 25888226 -98187946 - L1M4 LINE L1 -6287 255 22 4 782 23 0 0 0 chr9 25888413 25888436 -98187736 + AT_rich Low_complexity Low_complexity 1 23 0 4 782 3363 41 8 0 chr9 25889213 25889606 -98186566 + MTA_Mm LTR MaLR 1 396 0 4 782 8470 64 5 1 chr9 25889606 25890700 -98185472 + MTA_Mm-int LTR MaLR 1 1098 0 4 782 3313 43 5 0 chr9 25890700 25891094 -98185078 + MTA_Mm LTR MaLR 1 396 0 4 782 234 0 0 0 chr9 25891740 25891766 -98184406 + (T)n Simple_repeat Simple_repeat 1 26 0 4 782 4894 158 35 7 chr9 25892104 25892970 -98183202 + RMER12 LTR ERVK 1 890 -432 4 782 222 128 0 0 chr9 25892970 25893009 -98183163 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 782 648 194 284 80 chr9 25893013 25893305 -98182867 + RMER12 LTR ERVK 987 1322 0 4 782 327 191 56 11 chr9 25893396 25893486 -98182686 + Lx9 LINE L1 7316 7409 -235 4 782 441 0 0 0 chr9 25893647 25893696 -98182476 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 782 412 276 61 0 chr9 25894058 25894156 -98182016 - MLT1A0 LTR MaLR -95 270 167 4 782 296 256 50 33 chr9 25894158 25894279 -98181893 - RLTR25B LTR ERVK 0 1028 906 4 782 701 175 12 112 chr9 25894248 25894409 -98181763 - RLTR25B LTR ERVK -252 776 632 4 782 549 205 0 0 chr9 25894565 25894682 -98181490 + (CATA)n Simple_repeat Simple_repeat 4 120 0 4 782 619 170 36 36 chr9 25895075 25895215 -98180957 - RLTR25B LTR ERVK -582 446 307 4 782 22 0 0 0 chr9 25899338 25899360 -98176812 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 252 0 0 0 chr9 25899559 25899587 -98176585 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 782 247 238 204 19 chr9 25899598 25899701 -98176471 - MIRc SINE MIR -98 170 49 4 782 1304 238 97 0 chr9 25900540 25900880 -98175292 - Lx5 LINE L1 -8 7042 6670 4 782 1015 181 0 0 chr9 25900875 25901068 -98175104 - L1_Mur2 LINE L1 -524 5353 5161 4 782 183 226 31 46 chr9 25901080 25901145 -98175027 + L2 LINE L2 403 466 -2953 4 782 411 223 2 60 chr9 25901350 25901493 -98174679 - L1_Mur2 LINE L1 -953 4924 4789 4 782 3057 308 39 18 chr9 25901516 25902748 -98173424 + Lx7 LINE L1 6057 7314 -382 4 782 249 33 0 0 chr9 25902801 25902831 -98173341 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 782 252 22 67 0 chr9 25902867 25902912 -98173260 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 4 782 2885 21 0 43 chr9 25903830 25904182 -98171990 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 782 53126 21 15 6 chr9 25904182 25910601 -98165571 - IAPEz-int LTR ERVK 0 6481 8 4 782 2885 21 0 43 chr9 25910601 25910953 -98165219 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 782 660 269 14 0 chr9 25912262 25912407 -98163765 - B1_Mur1 SINE Alu -1 148 2 4 782 345 338 13 57 chr9 25912267 25912424 -98163748 - ID_B1 SINE B4 -6 218 69 4 782 396 260 54 59 chr9 25912430 25912651 -98163521 - L1MC5 LINE L1 -1009 6952 6733 4 782 526 306 120 21 chr9 25912980 25913214 -98162958 - MTE2b LTR MaLR 0 379 123 4 782 297 128 0 0 chr9 25913487 25913534 -98162638 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 782 913 282 83 0 chr9 25913545 25913797 -98162375 - B4 SINE B4 -18 274 2 4 782 987 289 93 78 chr9 25913862 25914388 -98161784 + RMER5 LTR ERV1 1 534 0 4 782 231 161 0 0 chr9 25915345 25915401 -98160771 + CT-rich Low_complexity Low_complexity 1 56 0 4 782 1375 247 47 30 chr9 25915547 25916056 -98160116 - L1_Rod LINE L1 -3782 2065 1548 4 782 862 264 35 0 chr9 25916074 25916332 -98159840 - L1_Mur3 LINE L1 -3179 2701 2435 4 782 481 218 0 0 chr9 25916405 25916506 -98159666 - Lx9 LINE L1 -245 7399 7299 4 782 417 283 88 0 chr9 25916584 25916743 -98159429 - Lx9 LINE L1 -452 7192 7020 4 782 1854 158 12 25 chr9 25916806 25917131 -98159041 - ORR1A4 LTR MaLR -8 321 1 4 782 338 311 21 10 chr9 25917193 25917385 -98158787 - L1_Mur3 LINE L1 -3873 2007 1814 4 782 1169 77 0 6 chr9 25917401 25917570 -98158602 - L1Md_F2 LINE L1 0 6582 6415 4 782 388 0 0 0 chr9 25917570 25917619 -98158553 - MERVL-int LTR ERVL -3428 2057 2009 4 782 3359 36 3 0 chr9 25917622 25918014 -98158158 + MTA_Mm LTR MaLR 4 396 0 5 782 1070 43 0 0 chr9 25918014 25918155 -98158017 - L1Md_F2 LINE L1 -45 6537 6397 5 782 309 295 39 2 chr9 25918156 25918330 -98157842 - L1_Mur3 LINE L1 -4085 1795 1612 4 782 4261 149 21 8 chr9 25918343 25919047 -98157125 - Lx LINE L1 -4 6650 5938 5 782 2459 90 0 0 chr9 25919071 25919415 -98156757 + L1_Mus4 LINE L1 5587 5930 -706 5 782 621 268 25 66 chr9 25919417 25919842 -98156330 - L1_Mur3 LINE L1 -4273 1607 1210 4 782 950 242 28 55 chr9 25919940 25920283 -98155889 + RLTR33 LTR ERVK 176 593 -85 5 782 1860 172 32 19 chr9 25920728 25920876 -98155296 - ORR1C1 LTR MaLR 0 378 230 5 782 396 59 0 0 chr9 25920876 25920927 -98155245 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 5 782 1860 172 32 19 chr9 25920927 25921151 -98155021 - ORR1C1 LTR MaLR -149 229 1 5 782 332 329 39 40 chr9 25921704 25921939 -98154233 + L1M5 LINE L1 3190 3435 -2711 5 782 230 286 29 0 chr9 25922020 25922090 -98154082 + L1M5 LINE L1 3498 3569 -2577 5 782 1540 231 40 3 chr9 25922216 25922567 -98153605 - MTD LTR MaLR -2 417 54 5 782 216 0 0 0 chr9 25922609 25922633 -98153539 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 782 321 316 82 44 chr9 25923303 25923462 -98152710 - MTEa LTR MaLR -12 367 203 5 782 479 292 126 59 chr9 25923401 25923628 -98152544 + MTD LTR MaLR 176 390 -29 5 782 219 286 120 11 chr9 25923875 25923967 -98152205 + MIRb SINE MIR 133 234 -34 5 782 698 297 76 31 chr9 25924135 25924489 -98151683 - ORR1D2 LTR MaLR 0 370 1 5 782 332 279 0 0 chr9 25925204 25925272 -98150900 + ID_B1 SINE B4 93 160 -64 5 782 378 0 0 0 chr9 25925273 25925315 -98150857 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 782 651 304 147 60 chr9 25925318 25925570 -98150602 - B4 SINE B4 -18 274 1 5 782 1867 311 62 32 chr9 25926769 25927618 -98148554 - Lx8 LINE L1 -2 7471 6597 5 782 1838 164 44 56 chr9 25927612 25928025 -98148147 + RMER1B Other Other 649 1056 -10 5 782 2906 137 0 46 chr9 25928272 25928769 -98147403 + Lx2 LINE L1 6518 6991 -6 5 782 318 271 21 98 chr9 25928779 25928922 -98147250 - L1MC4 LINE L1 -9 8033 7902 5 782 280 333 9 0 chr9 25929334 25929442 -98146730 - Lx8 LINE L1 -916 6557 6449 5 782 1145 291 66 53 chr9 25929449 25929835 -98146337 - Lx7 LINE L1 -1416 6280 5888 5 782 3329 162 7 19 chr9 25929835 25930425 -98145747 + Lx2 LINE L1 6415 6997 0 5 782 1260 237 11 4 chr9 25930425 25930784 -98145388 - Lx7 LINE L1 -1809 5887 5522 5 782 1905 245 42 26 chr9 25930803 25931302 -98144870 - RMER19C LTR ERVK 0 611 105 5 782 255 288 248 0 chr9 25931315 25931440 -98144732 + RMER1C Other Other 421 613 -729 5 782 335 256 0 0 chr9 25931439 25931521 -98144651 + RMER1C Other Other 1261 1342 0 5 782 4671 100 6 3 chr9 25931775 25932425 -98143747 + L1_Mus4 LINE L1 5985 6636 0 5 782 1347 220 30 26 chr9 25933323 25933626 -98142546 + RLTR11A2 LTR ERVK 1 304 -223 5 782 481 137 71 11 chr9 25933622 25933731 -98142441 + RLTR11A2 LTR ERVK 409 528 0 5 782 289 283 46 28 chr9 25934125 25934234 -98141938 - MLT1D LTR MaLR -373 132 22 5 782 315 130 0 0 chr9 25934811 25934865 -98141307 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 782 526 256 101 19 chr9 25934868 25935075 -98141097 - Lx9 LINE L1 -169 7475 7252 5 782 811 189 5 82 chr9 25935101 25935320 -98140852 + Lx9 LINE L1 6992 7193 -451 5 782 248 239 142 76 chr9 25935506 25935540 -98140632 - B2_Mm2 SINE B2 -7 188 62 5 782 541 310 8 0 chr9 25935540 25935669 -98140503 - RSINE1 SINE B4 -21 144 15 5 782 248 239 142 76 chr9 25935669 25935682 -98140490 - B2_Mm2 SINE B2 -7 61 5 5 782 29 60 0 0 chr9 25935693 25935743 -98140429 + AT_rich Low_complexity Low_complexity 1 50 0 5 782 726 335 30 0 chr9 25936456 25936653 -98139519 + B3 SINE B2 14 216 0 5 782 1212 33 0 0 chr9 25936686 25936839 -98139333 + (GGGAGA)n Simple_repeat Simple_repeat 5 157 0 5 782 182 341 0 0 chr9 25937839 25937883 -98138289 - MIRc SINE MIR -184 84 41 5 782 392 262 103 0 chr9 25939363 25939470 -98136702 - ID_B1 SINE B4 -105 119 2 5 782 393 22 0 0 chr9 25939583 25939629 -98136543 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 782 472 66 0 0 chr9 25939814 25939875 -98136297 + L1Md_F2 LINE L1 5525 5585 -298 5 782 7699 62 8 12 chr9 25939876 25940876 -98135296 + L1Md_F2 LINE L1 5587 6582 0 5 782 240 111 0 0 chr9 25940879 25940915 -98135257 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 5 782 192 125 0 0 chr9 25942565 25942597 -98133575 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 782 206 282 0 0 chr9 25942745 25942816 -98133356 + A-rich Low_complexity Low_complexity 2 72 0 5 782 1129 263 23 35 chr9 25942881 25943275 -98132897 - Lx7 LINE L1 -456 7240 6852 5 782 645 183 0 0 chr9 25944324 25944428 -98131744 + URR1B DNA MER1_type 1 104 -121 5 782 1413 260 75 19 chr9 25944473 25944688 -98131484 - RLTR12B LTR ERVK -19 509 277 5 782 1175 58 0 6 chr9 25944688 25944845 -98131327 + (TTCC)n Simple_repeat Simple_repeat 2 157 0 5 782 1413 260 75 19 chr9 25944845 25945111 -98131061 - RLTR12B LTR ERVK -252 276 1 5 782 692 176 8 0 chr9 25945111 25945233 -98130939 + URR1B DNA MER1_type 102 224 -1 5 782 378 331 83 49 chr9 25945668 25945932 -98130240 + L1MEc LINE L1 1016 1288 -5112 5 782 355 320 100 11 chr9 25946148 25946328 -98129844 + L1MEc LINE L1 1667 1862 -4553 5 782 2208 55 0 0 chr9 25947026 25947301 -98128871 - L1Md_F2 LINE L1 -12 6570 6296 5 782 25074 93 11 2 chr9 25947301 25951064 -98125108 + L1Md_F2 LINE L1 1786 5585 -298 5 782 6893 94 21 1 chr9 25951065 25952038 -98124134 + L1Md_F2 LINE L1 5587 6578 -4 5 783 782 197 150 35 chr9 25952937 25953137 -98123035 + ID_B1 SINE B4 2 224 0 5 783 5813 101 21 64 chr9 25954176 25955203 -98120969 - L1Md_F2 LINE L1 0 6582 5600 5 783 24144 96 19 12 chr9 25955213 25958252 -98117920 - L1Md_F2 LINE L1 -854 5029 1978 5 783 191 61 30 0 chr9 25958252 25958285 -98117887 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 783 24144 86 11 7 chr9 25958285 25959606 -98116566 - L1Md_F2 LINE L1 -3906 1977 642 5 783 275 109 0 61 chr9 25959601 25959650 -98116522 - L1Md_F2 LINE L1 -6326 312 267 5 783 263 346 43 86 chr9 25960220 25960359 -98115813 - ORR1D2 LTR MaLR -229 141 9 5 783 256 282 161 37 chr9 25960547 25960628 -98115544 + B3A SINE B2 36 126 -72 5 783 688 59 20 0 chr9 25960714 25960816 -98115356 + (CA)n Simple_repeat Simple_repeat 2 105 0 5 783 2343 186 37 29 chr9 25962631 25962733 -98113439 + RMER20B LTR ERVK 51 144 -483 5 783 5704 37 0 1 chr9 25962733 25963412 -98112760 + L1Md_T LINE L1 5905 6582 0 5 783 2343 186 37 29 chr9 25963412 25963790 -98112382 + RMER20B LTR ERVK 145 535 -92 5 783 407 325 38 33 chr9 25963801 25964011 -98112161 + Lx8 LINE L1 7115 7325 -148 5 783 280 265 31 68 chr9 25964082 25964244 -98111928 + L1Md_F2 LINE L1 868 1023 -6585 5 783 647 133 0 0 chr9 25964441 25964539 -98111633 - BC1_Mm scRNA scRNA -51 101 4 5 783 747 238 45 29 chr9 25964562 25964804 -98111368 - L1_Mur3 LINE L1 -3888 1992 1747 5 783 2016 111 259 34 chr9 25964807 25965254 -98110918 - RLTR6_Mm LTR ERV1 -70 584 37 5 783 5924 53 1 4 chr9 25965360 25966123 -98110049 - RLTR6-int LTR ERV1 0 7778 7018 5 783 43641 38 17 1 chr9 25966101 25971895 -98104277 - RLTR6-int LTR ERV1 -1777 6001 1 5 783 2054 120 249 32 chr9 25971896 25972362 -98103810 - RLTR6_Mm LTR ERV1 -51 603 37 5 783 1329 248 30 8 chr9 25972463 25972954 -98103218 - L1_Mur3 LINE L1 -4136 1744 1243 5 783 938 261 90 27 chr9 25972996 25973398 -98102774 + L1Md_F2 LINE L1 1700 2126 -3721 5 783 198 0 0 0 chr9 25973398 25973420 -98102752 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 783 491 94 0 86 chr9 25973492 25973555 -98102617 - L1_Mur1 LINE L1 -682 5204 5149 5 783 4654 121 6 41 chr9 25973555 25974333 -98101839 - RMER17A LTR ERVK 0 751 1 5 783 491 94 0 86 chr9 25974333 25974362 -98101810 - L1_Mur1 LINE L1 -738 5148 5120 5 783 2304 107 0 3 chr9 25974389 25974745 -98101427 + Lx3B LINE L1 5207 5561 -325 5 783 3178 130 103 24 chr9 25974742 25975757 -98100415 + Lx3B LINE L1 5876 6971 -2 5 783 5042 262 26 170 chr9 25975780 25975894 -98100278 + L1Md_F2 LINE L1 2156 2265 -3582 5 783 648 38 0 0 chr9 25975894 25975973 -98100199 + (GA)n Simple_repeat Simple_repeat 1 79 0 5 783 15396 208 19 124 chr9 25975973 25978045 -98098127 + L1Md_F2 LINE L1 2266 3821 -2062 5 783 7166 30 1 0 chr9 25978045 25978881 -98097291 + L1Md_T LINE L1 5746 6582 0 5 783 15396 96 7 29 chr9 25978881 25980662 -98095510 + L1Md_F2 LINE L1 3822 5586 -297 5 783 7646 72 3 7 chr9 25980662 25981662 -98094510 + L1Md_F2 LINE L1 5587 6582 0 5 783 6579 127 3 4 chr9 25981663 25982730 -98093442 + L1_Mus1 LINE L1 4602 5667 -216 5 783 5847 79 5 0 chr9 25982730 25983502 -98092670 + L1_Mus1 LINE L1 5788 6563 -4 5 783 440 220 6 28 chr9 25985131 25985313 -98090859 + GA-rich Low_complexity Low_complexity 1 178 0 5 783 282 183 0 0 chr9 25985364 25985435 -98090737 + GA-rich Low_complexity Low_complexity 4 74 0 5 783 268 241 43 0 chr9 25986469 25986585 -98089587 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 5 783 2327 218 6 19 chr9 25987093 25987580 -98088592 - Lx2 LINE L1 0 6997 6517 5 783 1262 134 0 15 chr9 25987582 25987779 -98088393 + Lx2A1 LINE L1 6274 6467 -541 5 783 817 224 74 45 chr9 25987787 25988024 -98088148 + ORR1D1 LTR MaLR 109 349 -45 5 783 365 343 43 28 chr9 25988069 25988210 -98087962 + RSINE1 SINE B4 4 146 -19 5 783 396 0 0 0 chr9 25988220 25988264 -98087908 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 783 663 292 64 75 chr9 25988514 25988873 -98087299 - ORR1E LTR MaLR -4 355 1 5 783 387 356 89 7 chr9 25989058 25989519 -98086653 + L1M4 LINE L1 3321 3819 -2327 5 783 261 0 0 0 chr9 25989522 25989551 -98086621 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 783 707 259 132 18 chr9 25990668 25990940 -98085232 + Lx8 LINE L1 7166 7468 -5 5 783 956 270 122 10 chr9 25991429 25991815 -98084357 + L1MC3 LINE L1 7127 7555 -230 5 783 303 266 62 0 chr9 25991826 25991954 -98084218 + L1MC3 LINE L1 7592 7727 -58 5 783 38 61 0 0 chr9 25992032 25992098 -98084074 + AT_rich Low_complexity Low_complexity 1 66 0 5 783 717 162 116 5 chr9 25992150 25992349 -98083823 - Lx9 LINE L1 0 7644 7424 5 783 225 286 41 0 chr9 25992544 25992642 -98083530 - L1MA8 LINE L1 -6 6285 6184 5 783 498 322 179 3 chr9 25992683 25993007 -98083165 + L1M4 LINE L1 4699 5079 -1067 5 783 540 0 0 0 chr9 25993315 25993375 -98082797 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 783 383 38 0 19 chr9 25993500 25993554 -98082618 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 5 783 186 317 0 0 chr9 25995548 25995589 -98080583 - MIRm SINE MIR -145 131 91 5 783 596 278 109 36 chr9 25995702 25995922 -98080250 + B4 SINE B4 9 244 -48 5 783 1005 89 0 0 chr9 25997152 25997298 -98078874 + Lx2 LINE L1 5690 5835 -1162 5 783 225 209 0 23 chr9 25997364 25997408 -98078764 - MLT1A0 LTR MaLR -64 301 259 5 783 588 296 93 82 chr9 25997883 25998163 -98078009 - MLT1A0 LTR MaLR -80 285 3 5 783 855 282 62 13 chr9 25998171 25998480 -98077692 - MLT1A0-int LTR MaLR -6 1729 1406 5 783 259 325 24 24 chr9 25998715 25998800 -98077372 - MLT1A0-int LTR MaLR -964 771 687 5 783 402 21 0 0 chr9 25999891 25999938 -98076234 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 783 180 0 0 0 chr9 25999938 25999957 -98076215 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 783 791 69 8 8 chr9 26000000 26000117 -98076055 - L1_Mus2 LINE L1 -9 6557 6441 1 783 397 333 6 25 chr9 26000797 26000960 -98075212 + RMER15-int LTR ERVL 4361 4520 -479 2 783 392 308 40 20 chr9 26001192 26001341 -98074831 - RMER15 LTR ERVL -2 573 422 3 783 537 16 0 0 chr9 26001382 26001444 -98074728 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 783 1036 234 62 135 chr9 26001736 26002136 -98074036 - RMER20B LTR ERVK -23 604 234 5 783 2126 181 44 32 chr9 26002761 26003166 -98073006 - MTC LTR MaLR -11 410 1 6 783 1536 232 57 11 chr9 26004307 26004660 -98071512 + ORR1D1 LTR MaLR 6 374 0 7 783 195 42 0 0 chr9 26005071 26005095 -98071077 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 783 2774 197 88 15 chr9 26005873 26006544 -98069628 - Lx5 LINE L1 -704 6346 5627 9 783 474 122 0 0 chr9 26006545 26006619 -98069553 - L1_Mur2 LINE L1 -826 5051 4978 1 783 694 180 8 0 chr9 26006616 26006744 -98069428 + Lx5 LINE L1 6368 6496 -554 1 783 619 288 51 51 chr9 26006766 26007019 -98069153 + RMER5 LTR ERV1 282 534 0 1 783 525 332 68 24 chr9 26007393 26007968 -98068204 - L1MDa LINE L1 -5013 1620 1021 1 783 26 74 0 0 chr9 26008039 26008093 -98068079 + AT_rich Low_complexity Low_complexity 1 54 0 1 783 279 0 0 0 chr9 26008900 26008931 -98067241 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 783 1808 124 0 0 chr9 26009392 26009659 -98066513 - RMER17A LTR ERVK -484 267 1 1 783 737 175 84 7 chr9 26009659 26009794 -98066378 - RLTR17 LTR ERVK -545 147 1 1 783 2745 101 29 0 chr9 26009795 26010242 -98065930 + MusHAL1 LINE L1 281 740 -1972 1 783 5006 115 11 117 chr9 26010236 26010668 -98065504 + Lx2A LINE L1 4770 5081 -802 1 783 6163 70 16 5 chr9 26010668 26011482 -98064690 - L1Md_F2 LINE L1 0 6582 5760 2 783 5006 118 11 111 chr9 26011482 26012134 -98064038 + Lx2A LINE L1 5082 5744 -1264 1 783 480 289 33 24 chr9 26012135 26012348 -98063824 - MTC-int LTR MaLR -175 1083 869 2 783 261 0 0 0 chr9 26012558 26012587 -98063585 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 2 783 1888 263 89 67 chr9 26012601 26013415 -98062757 - MTC-int LTR MaLR -358 900 1 2 783 1165 264 80 14 chr9 26013417 26013776 -98062396 - MTD LTR MaLR 0 419 51 2 783 1573 150 31 6 chr9 26013776 26014097 -98062075 - L1_Mur2 LINE L1 -572 5305 4977 2 783 3057 116 38 0 chr9 26014097 26014547 -98061625 + Lx LINE L1 6183 6649 -5 2 783 471 189 68 51 chr9 26014555 26014672 -98061500 - MTD LTR MaLR -299 120 2 2 783 1075 326 94 30 chr9 26016171 26016671 -98059501 + MLT1A0-int LTR MaLR 90 621 -1114 2 783 4965 31 0 0 chr9 26016686 26017266 -98058906 - L1Md_T LINE L1 0 6582 6003 2 783 6268 23 0 0 chr9 26017266 26018035 -98058137 + L1_Mm LINE L1 4586 5354 -529 2 783 915 372 104 77 chr9 26018037 26019114 -98057058 + MLT1A0-int LTR MaLR 630 1735 0 2 783 329 321 70 35 chr9 26019116 26019258 -98056914 + MLT1A0 LTR MaLR 3 149 -216 2 783 426 85 0 0 chr9 26019480 26019539 -98056633 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 783 436 279 124 7 chr9 26019579 26019716 -98056456 + MLT1A0 LTR MaLR 163 315 -50 2 783 2191 240 72 14 chr9 26019718 26020285 -98055887 + Lx7 LINE L1 6298 6897 -799 3 783 1000 263 77 64 chr9 26020294 26020761 -98055411 + Lx7 LINE L1 7223 7695 -1 3 783 674 301 55 5 chr9 26020853 26021107 -98055065 - L1_Mur3 LINE L1 -2317 3563 3304 3 783 231 36 0 0 chr9 26021107 26021135 -98055037 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 3 783 674 301 57 14 chr9 26021135 26021360 -98054812 - L1_Mur3 LINE L1 -2821 3322 3100 3 783 1349 255 74 2 chr9 26021345 26021778 -98054394 - Lx9 LINE L1 -2 7642 7179 3 783 658 295 31 59 chr9 26021934 26022446 -98053726 + L1M2 LINE L1 4453 4950 -1193 3 783 366 85 0 0 chr9 26022492 26022551 -98053621 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 3 783 307 211 0 13 chr9 26022551 26022628 -98053544 + L1M2 LINE L1 4948 5023 -1120 3 783 2366 186 37 14 chr9 26022627 26023200 -98052972 - L1_Mur2 LINE L1 -897 4980 4395 3 783 27293 106 71 15 chr9 26023186 26028699 -98047473 + Lx3_Mus LINE L1 15 6136 -873 3 783 40 0 0 0 chr9 26028699 26028739 -98047433 + AT_rich Low_complexity Low_complexity 1 40 0 3 783 785 209 52 52 chr9 26028763 26029030 -98047142 - L1_Mur2 LINE L1 -1447 4433 4167 3 783 3935 252 30 49 chr9 26028982 26030776 -98045396 + Lx5 LINE L1 4963 6713 -337 3 783 3300 48 2 0 chr9 26030776 26031171 -98045001 - MTA_Mm LTR MaLR 0 396 1 4 783 2806 291 50 90 chr9 26031171 26031346 -98044826 + Lx5 LINE L1 6714 6886 -164 3 783 1620 3 16 25 chr9 26031359 26031722 -98044450 + (TCTCCC)n Simple_repeat Simple_repeat 1 359 0 4 783 240 282 36 18 chr9 26031767 26031879 -98044293 + Lx6 LINE L1 7342 7455 -5 4 783 229 288 65 69 chr9 26032792 26032858 -98043314 + Lx8 LINE L1 5177 5248 -632 4 783 898 62 15 0 chr9 26032858 26032988 -98043184 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 4 783 229 288 65 69 chr9 26032988 26033182 -98042990 + Lx8 LINE L1 5249 5436 -444 4 783 725 300 32 18 chr9 26033695 26033980 -98042192 + Lx9 LINE L1 6437 6725 -919 4 783 617 286 121 0 chr9 26033999 26034150 -98042022 + B3 SINE B2 3 157 -59 4 783 273 57 0 0 chr9 26034150 26034185 -98041987 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 783 617 286 121 0 chr9 26034185 26034215 -98041957 + B3 SINE B2 158 204 -12 4 783 9361 108 9 1 chr9 26034291 26036528 -98039644 - L1_Mus3 LINE L1 -1 6637 4379 4 783 584 180 50 136 chr9 26036575 26036830 -98039342 + RLTR25B LTR ERVK 717 1028 0 4 783 459 0 0 0 chr9 26036881 26036932 -98039240 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 783 1535 301 58 24 chr9 26037030 26038116 -98038056 + Lx8 LINE L1 5435 6598 -875 4 783 288 357 193 38 chr9 26038643 26039042 -98037130 + LTR33 LTR ERVL 43 503 -12 5 783 22 0 0 0 chr9 26039541 26039563 -98036609 + GC_rich Low_complexity Low_complexity 1 22 0 5 783 294 179 5 45 chr9 26040598 26040692 -98035480 + Lx7 LINE L1 5352 5435 -924 5 783 361 305 17 52 chr9 26040709 26040836 -98035336 + Lx7 LINE L1 5501 5661 -2035 5 783 1318 244 42 14 chr9 26040836 26041194 -98034978 + ORR1D2 LTR MaLR 1 368 -2 5 783 361 299 7 55 chr9 26041194 26041269 -98034903 + Lx7 LINE L1 5662 5733 -1963 5 783 249 264 113 14 chr9 26041264 26041332 -98034840 + Lx8 LINE L1 5760 5836 -1637 5 783 429 20 0 0 chr9 26041332 26041382 -98034790 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 783 249 264 113 14 chr9 26041382 26041455 -98034717 + Lx8 LINE L1 5837 5914 -1559 5 783 276 282 0 0 chr9 26041802 26041873 -98034299 + ID2 SINE ID 2 72 -11 5 783 470 288 44 25 chr9 26041896 26042056 -98034116 + RSINE1 SINE B4 3 165 0 5 783 680 144 29 11 chr9 26042061 26042236 -98033936 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 783 208 180 0 20 chr9 26042240 26042291 -98033881 + A-rich Low_complexity Low_complexity 4 53 0 6 783 528 244 75 33 chr9 26043110 26043322 -98032850 + RLTR42-int LTR ERVK 1174 1394 -4128 6 783 384 371 53 30 chr9 26044352 26044655 -98031517 - L1ME3A LINE L1 -341 5832 5523 6 783 212 196 0 19 chr9 26044988 26045040 -98031132 + T-rich Low_complexity Low_complexity 2 52 0 6 783 354 306 97 5 chr9 26045088 26045295 -98030877 - L1ME3A LINE L1 -1587 4559 4334 6 783 365 368 33 15 chr9 26046045 26046318 -98029854 + L1ME1 LINE L1 5900 6177 -2 6 783 254 341 85 43 chr9 26046480 26046621 -98029551 - RSINE1 SINE B4 -3 162 16 6 783 569 198 0 19 chr9 26046753 26046861 -98029311 - B1_Mur1 SINE Alu 0 149 44 6 783 249 309 49 35 chr9 26046875 26047019 -98029153 - MIR SINE MIR -36 226 81 6 783 5926 71 0 1 chr9 26047379 26048183 -98027989 + L1Md_F2 LINE L1 4784 5586 -297 6 783 7641 58 13 10 chr9 26048185 26049175 -98026997 + L1Md_F2 LINE L1 5589 6581 -1 6 783 23 33 0 0 chr9 26049253 26049283 -98026889 + AT_rich Low_complexity Low_complexity 1 30 0 6 783 824 320 47 40 chr9 26049695 26050060 -98026112 + MTD LTR MaLR 1 386 -14 7 783 848 267 59 18 chr9 26050131 26050637 -98025535 - L1MC LINE L1 -2329 5666 5142 7 783 181 363 25 58 chr9 26050853 26050973 -98025199 - MIR SINE MIR -145 117 2 7 783 1860 295 121 32 chr9 26051193 26052309 -98023863 - Lx9 LINE L1 -54 7590 6376 7 783 798 78 16 8 chr9 26052500 26052629 -98023543 + (TC)n Simple_repeat Simple_repeat 1 130 0 7 783 186 405 13 0 chr9 26053220 26053299 -98022873 + L2b LINE L2 3295 3374 -1 7 783 650 275 7 0 chr9 26053375 26053517 -98022655 + URR1B DNA MER1_type 1 143 -82 7 783 3118 271 46 89 chr9 26053526 26054674 -98021498 - ORR1D2-int LTR MaLR -269 1101 3 7 783 839 278 72 55 chr9 26054675 26055037 -98021135 - ORR1D2 LTR MaLR 0 370 3 7 783 744 311 93 16 chr9 26055972 26056220 -98019952 + B4 SINE B4 22 288 -4 7 783 558 114 0 0 chr9 26056249 26056337 -98019835 + (CA)n Simple_repeat Simple_repeat 2 89 0 7 783 2799 39 62 0 chr9 26056509 26056845 -98019327 - IAPEY2_LTR LTR ERVK 0 357 1 8 783 625 253 11 6 chr9 26057342 26057521 -98018651 + L1_Mur3 LINE L1 2573 2752 -3128 8 783 2410 203 48 2 chr9 26057532 26057640 -98018532 - RMER1B Other Other -14 1052 927 8 783 207 0 0 0 chr9 26057640 26057663 -98018509 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 8 783 2410 203 48 2 chr9 26057663 26058037 -98018135 - RMER1B Other Other -140 926 549 8 783 261 0 0 0 chr9 26058051 26058080 -98018092 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 783 317 255 93 19 chr9 26058080 26058182 -98017990 + L1M2 LINE L1 3070 3181 -2962 8 783 1448 283 72 13 chr9 26058211 26058894 -98017278 + L1_Mur3 LINE L1 4051 4773 -1107 8 783 21 0 0 0 chr9 26058902 26058923 -98017249 + AT_rich Low_complexity Low_complexity 1 21 0 8 783 1053 317 110 18 chr9 26059257 26059929 -98016243 - Lx8 LINE L1 -427 7046 6313 8 783 257 310 16 49 chr9 26060440 26060562 -98015610 + GA-rich Low_complexity Low_complexity 3 120 0 8 783 4627 114 28 165 chr9 26063209 26064030 -98012142 + RMER17D LTR ERVK 1 692 -197 8 783 867 70 0 0 chr9 26064030 26064145 -98012027 + (GAAAA)n Simple_repeat Simple_repeat 5 119 0 9 783 4627 114 28 165 chr9 26064145 26064350 -98011822 + RMER17D LTR ERVK 693 887 -2 8 783 369 77 12 37 chr9 26064894 26064975 -98011197 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 9 783 959 203 0 0 chr9 26065021 26065218 -98010954 + L1_Mur1 LINE L1 5495 5691 -195 9 783 3223 96 4 0 chr9 26065202 26065682 -98010490 - MusHAL1 LINE L1 -800 1912 1431 9 783 2441 72 9 3 chr9 26065678 26066024 -98010148 + L1_Mus3 LINE L1 6263 6610 -28 9 783 334 290 0 0 chr9 26066032 26066132 -98010040 + (TG)n Simple_repeat Simple_repeat 2 101 0 9 783 591 81 0 0 chr9 26066137 26066223 -98009949 + (GA)n Simple_repeat Simple_repeat 1 86 0 9 783 459 0 0 0 chr9 26067781 26067832 -98008340 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 783 1158 144 119 0 chr9 26068625 26068827 -98007345 - URR1A DNA MER1_type 0 226 1 9 783 225 161 53 18 chr9 26068863 26068920 -98007252 + A-rich Low_complexity Low_complexity 1 59 0 9 783 415 288 191 26 chr9 26070109 26070298 -98005874 + HAL1-3A_ME LINE L1 1976 2195 -663 1 783 221 392 19 39 chr9 26070479 26070500 -98005672 + ID_B1 SINE B4 74 224 0 1 783 504 316 0 0 chr9 26070500 26070633 -98005539 + B1_Mur1 SINE Alu 15 147 -2 1 783 531 252 138 32 chr9 26070657 26070780 -98005392 + B1F SINE Alu 6 141 -8 1 783 364 250 124 11 chr9 26071307 26071493 -98004679 + Lx9 LINE L1 7383 7589 -55 1 783 23 0 0 0 chr9 26071551 26071574 -98004598 + AT_rich Low_complexity Low_complexity 1 23 0 1 783 466 272 97 18 chr9 26071598 26071763 -98004409 + MTD LTR MaLR 228 405 -14 1 783 254 252 94 23 chr9 26073291 26073447 -98002725 - L1MA6 LINE L1 -377 5914 5748 1 783 499 319 29 23 chr9 26073601 26073774 -98002398 - MTEa LTR MaLR -201 178 5 1 783 230 253 21 10 chr9 26074146 26074242 -98001930 - Lx9 LINE L1 -29 7615 7519 1 783 472 272 103 45 chr9 26074249 26074472 -98001700 - L1M4 LINE L1 -1648 4498 4263 1 783 1311 267 92 30 chr9 26074473 26075354 -98000818 - L1MC1 LINE L1 -6 6327 5392 1 783 3844 191 23 26 chr9 26075423 26076202 -97999970 - Lx5 LINE L1 -1 7049 6273 1 783 20065 175 44 27 chr9 26076203 26079206 -97996966 - Lx5 LINE L1 -938 6112 3143 1 783 264 30 0 0 chr9 26079206 26079239 -97996933 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 1 783 20065 175 47 27 chr9 26079239 26080261 -97995911 - Lx5 LINE L1 -2735 3142 2061 1 783 225 0 0 0 chr9 26080261 26080286 -97995886 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 783 20065 182 73 22 chr9 26080286 26081297 -97994875 - Lx5 LINE L1 -3817 2060 896 1 783 433 269 59 25 chr9 26082050 26082168 -97994004 - PB1 SINE Alu -2 125 4 1 783 325 284 114 7 chr9 26082180 26082329 -97993843 - L1MC1 LINE L1 -961 5185 5021 1 783 973 343 81 38 chr9 26082684 26083217 -97992955 - MTE-int LTR MaLR -820 760 205 1 97 1084 318 83 30 chr9 26083221 26083656 -97992516 + MTE-int LTR MaLR 769 1226 -354 1 784 1355 145 0 87 chr9 26083656 26083815 -97992357 + RMER1C Other Other 807 961 -381 1 784 1721 168 3 75 chr9 26083815 26084163 -97992009 - ORR1A4 LTR MaLR -4 325 3 1 784 1355 145 0 87 chr9 26084163 26084268 -97991904 + RMER1C Other Other 962 1048 -294 1 784 671 142 91 14 chr9 26084268 26084422 -97991750 + B2_Mm2 SINE B2 24 187 -8 1 784 1236 165 79 14 chr9 26084422 26084699 -97991473 + RMER1C Other Other 1045 1339 -3 1 784 510 288 8 39 chr9 26084822 26084952 -97991220 - RLTR31_Mur LTR ERVK -57 496 371 1 784 767 346 21 24 chr9 26084979 26085319 -97990853 - RLTR17 LTR ERVK -229 463 125 1 784 602 58 0 0 chr9 26085519 26085605 -97990567 + B1_Mus1 SINE Alu 2 87 -61 1 784 486 0 0 0 chr9 26086940 26086994 -97989178 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 784 8535 7 0 0 chr9 26087664 26088938 -97987234 - L1Md_A LINE L1 0 6582 5309 1 784 405 0 0 0 chr9 26089475 26089520 -97986652 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 784 270 0 0 0 chr9 26089520 26089549 -97986623 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 784 453 341 80 42 chr9 26089713 26090247 -97985925 - L1M5 LINE L1 -3068 3078 2526 1 784 22 35 0 0 chr9 26092373 26092402 -97983770 + AT_rich Low_complexity Low_complexity 1 29 0 1 784 31 26 0 0 chr9 26092455 26092493 -97983679 + AT_rich Low_complexity Low_complexity 1 38 0 1 784 3204 116 2 2 chr9 26093089 26093564 -97982608 - L1_Mus4 LINE L1 -10 6626 6152 1 784 1378 68 31 0 chr9 26093565 26093757 -97982415 + L1_Mus4 LINE L1 5925 6122 -514 1 784 775 318 14 40 chr9 26093834 26094178 -97981994 - Lx9 LINE L1 -318 7326 6989 1 784 495 0 0 0 chr9 26094178 26094233 -97981939 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 784 333 0 0 0 chr9 26094233 26094269 -97981903 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 784 2112 106 118 0 chr9 26095120 26095449 -97980723 + RLTR9A LTR ERVK 1 368 0 1 784 462 18 0 0 chr9 26096423 26096478 -97979694 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 784 259 288 122 19 chr9 26096615 26096771 -97979401 + L1MEg LINE L1 1294 1465 -4619 1 784 405 0 0 0 chr9 26096771 26096816 -97979356 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 784 372 301 102 15 chr9 26097255 26097521 -97978651 + L1MC2 LINE L1 6004 6292 -52 1 784 25 31 0 0 chr9 26098029 26098061 -97978111 + AT_rich Low_complexity Low_complexity 1 32 0 1 784 392 270 53 26 chr9 26098077 26098190 -97977982 + MTD LTR MaLR 1 116 -305 1 784 2649 139 75 23 chr9 26098190 26098668 -97977504 + RLTR11A LTR ERVK 3 505 -23 1 784 587 241 75 6 chr9 26098659 26098818 -97977354 + MTD LTR MaLR 248 417 -2 1 784 26 64 0 0 chr9 26098845 26098892 -97977280 + AT_rich Low_complexity Low_complexity 1 47 0 1 784 5070 71 0 25 chr9 26099607 26100288 -97975884 + L1Md_F2 LINE L1 5908 6571 -11 1 784 4059 134 48 11 chr9 26100406 26101132 -97975040 - Lx2A LINE L1 -343 6665 5913 1 784 1668 102 44 139 chr9 26101134 26101500 -97974672 + Lx2A LINE L1 6678 7008 0 1 784 932 294 138 14 chr9 26101601 26101970 -97974202 + MTD LTR MaLR 1 415 -4 1 784 348 293 0 72 chr9 26102822 26102947 -97973225 + PB1D10 SINE Alu 2 117 0 1 784 2372 268 46 12 chr9 26102947 26103593 -97972579 - Lx6 LINE L1 -28 7432 6765 1 784 518 280 58 26 chr9 26103858 26104049 -97972123 - B3A SINE B2 0 198 2 1 784 262 234 36 27 chr9 26104868 26104978 -97971194 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 1 784 504 0 0 0 chr9 26105125 26105181 -97970991 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 784 375 141 0 0 chr9 26105181 26105245 -97970927 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 784 791 258 100 0 chr9 26106803 26106993 -97969179 - B3 SINE B2 0 216 8 1 784 246 156 0 0 chr9 26107381 26107426 -97968746 + T-rich Low_complexity Low_complexity 1 45 0 1 784 1769 208 93 3 chr9 26108112 26108488 -97967684 - MTC LTR MaLR -8 413 4 1 784 3239 34 37 0 chr9 26109739 26110121 -97966051 + MTA_Mm LTR MaLR 1 396 0 1 784 8500 59 9 1 chr9 26110121 26111210 -97964962 + MTA_Mm-int LTR MaLR 1 1098 0 1 784 3252 31 37 0 chr9 26111210 26111592 -97964580 + MTA_Mm LTR MaLR 1 396 0 1 784 423 0 0 0 chr9 26111598 26111645 -97964527 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 784 447 19 0 0 chr9 26111645 26111696 -97964476 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 784 6409 121 30 11 chr9 26111817 26112596 -97963576 - Lx LINE L1 -1 6653 5876 1 784 446 0 19 0 chr9 26112596 26112650 -97963522 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 784 423 0 0 0 chr9 26112650 26112696 -97963476 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 784 20662 173 34 17 chr9 26112696 26117117 -97959055 - L1_Mm LINE L1 -29 5854 1356 1 784 4712 122 70 3 chr9 26117132 26117877 -97958295 - Lx3_Mus LINE L1 -8 7001 6207 1 784 14192 110 24 2 chr9 26117877 26120230 -97955942 + L1_Mur1 LINE L1 1550 3953 -1933 1 784 4326 166 39 51 chr9 26120229 26121289 -97954883 - L1VL2 LINE L1 -2547 1068 22 1 784 584 184 88 0 chr9 26121300 26121425 -97954747 - L1VL2 LINE L1 -6106 229 94 1 784 6964 93 19 9 chr9 26121435 26122803 -97953369 - L1_Mus3 LINE L1 0 6638 5267 1 784 708 12 0 0 chr9 26122803 26122884 -97953288 + (TTC)n Simple_repeat Simple_repeat 2 82 0 1 784 959 109 14 7 chr9 26122887 26123026 -97953146 - B1_Mus1 SINE Alu -8 140 1 1 784 5859 112 6 21 chr9 26123026 26123336 -97952836 - L1_Mus3 LINE L1 -617 5266 4957 1 784 465 299 243 25 chr9 26124127 26124521 -97951651 - RMER5 LTR ERV1 -15 519 40 1 784 1188 287 74 29 chr9 26124849 26125581 -97950591 + L1MD LINE L1 4142 4906 -1240 1 784 1073 246 9 17 chr9 26125770 26126002 -97950170 + RLTR25B LTR ERVK 1 230 -798 1 784 303 299 158 23 chr9 26126724 26126895 -97949277 - L1MD LINE L1 -730 5512 5319 1 784 592 316 67 0 chr9 26127541 26127766 -97948406 - Lx8 LINE L1 -135 7338 7099 1 784 582 347 23 15 chr9 26127885 26128151 -97948021 - Lx8 LINE L1 -567 6906 6639 1 784 439 312 97 17 chr9 26128151 26128327 -97947845 + B4A SINE B4 39 228 -64 1 784 487 111 36 36 chr9 26128330 26128414 -97947758 + MTB_Mm LTR MaLR 271 354 -53 1 784 277 412 0 32 chr9 26128533 26128656 -97947516 + RSINE1 SINE B4 42 160 -5 1 784 1428 229 153 38 chr9 26128695 26129013 -97947159 - MTC LTR MaLR -1 420 54 1 784 1836 142 42 25 chr9 26129013 26129366 -97946806 - RLTR15 LTR ERVK 0 359 1 1 784 1428 229 153 38 chr9 26129366 26129419 -97946753 - MTC LTR MaLR -368 53 6 1 784 4808 197 129 9 chr9 26129437 26130537 -97945635 - MTC-int LTR MaLR -23 1235 4 1 784 1719 197 129 14 chr9 26130538 26130909 -97945263 - MTC LTR MaLR 0 421 8 1 784 437 0 0 19 chr9 26130909 26130963 -97945209 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1 784 254 284 105 26 chr9 26131002 26131078 -97945094 + ID4 SINE ID 1 82 -1 1 784 355 321 58 49 chr9 26131453 26131638 -97944534 + L1MD2 LINE L1 5765 5956 -403 1 784 1214 258 17 86 chr9 26131638 26132045 -97944127 - MTE2a LTR MaLR 0 379 1 1 784 355 321 58 49 chr9 26132045 26132085 -97944087 + L1MD2 LINE L1 5957 5992 -367 1 784 23 54 0 0 chr9 26132305 26132342 -97943830 + AT_rich Low_complexity Low_complexity 1 37 0 1 784 412 161 62 0 chr9 26132444 26132525 -97943647 - ORR1D2 LTR MaLR -5 365 280 1 784 955 253 4 0 chr9 26132532 26132761 -97943411 - Lx9 LINE L1 -266 7378 7149 1 784 978 283 92 0 chr9 26132761 26133001 -97943171 - ORR1D2 LTR MaLR -108 262 1 1 784 314 100 17 0 chr9 26133311 26133371 -97942801 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 1 784 1892 153 47 36 chr9 26133841 26134206 -97941966 - Lx2B LINE L1 -9 6991 6623 1 784 265 248 37 14 chr9 26134397 26134497 -97941675 + Lx9 LINE L1 6431 6496 -1148 1 784 219 49 22 89 chr9 26134498 26134543 -97941629 + T-rich Low_complexity Low_complexity 4 45 0 1 784 455 308 10 52 chr9 26134543 26134735 -97941437 + Lx8 LINE L1 6353 6536 -937 1 784 506 309 59 34 chr9 26134760 26134998 -97941174 + Lx8 LINE L1 7165 7408 -65 1 784 201 200 20 0 chr9 26135036 26135086 -97941086 + A-rich Low_complexity Low_complexity 1 51 0 1 784 16236 76 5 0 chr9 26135108 26138134 -97938038 + L1Md_F2 LINE L1 559 3599 -2284 1 784 2074 48 0 0 chr9 26138134 26138402 -97937770 + L1Md_F2 LINE L1 5319 5586 -297 1 784 8137 41 9 0 chr9 26138403 26139387 -97936785 + L1Md_F2 LINE L1 5588 6580 -2 1 784 201 133 0 0 chr9 26140156 26140186 -97935986 + (GGGAA)n Simple_repeat Simple_repeat 4 33 0 1 784 23 0 0 0 chr9 26141135 26141158 -97935014 + AT_rich Low_complexity Low_complexity 1 23 0 1 784 188 34 0 33 chr9 26141979 26142009 -97934163 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 784 267 271 22 45 chr9 26142872 26142961 -97933211 + RCHARR1 DNA MER1_type 884 970 -4 1 784 1142 81 0 7 chr9 26143334 26143483 -97932689 + B1_Mus1 SINE Alu 1 148 0 1 784 23855 121 71 13 chr9 26143524 26149338 -97926834 - L1_Mus2 LINE L1 -1 6565 387 1 784 30750 94 4 21 chr9 26149393 26155666 -97920506 - L1Md_F2 LINE L1 -14 6568 407 2 784 2015 249 85 65 chr9 26155668 26156317 -97919855 - RCHARR1 DNA MER1_type -276 698 37 2 784 350 57 19 0 chr9 26156416 26156469 -97919703 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 784 899 314 52 14 chr9 26156472 26156818 -97919354 - ORR1E LTR MaLR 0 359 1 2 784 686 318 18 52 chr9 26157473 26157702 -97918470 + B4A SINE B4 1 221 -71 2 784 519 17 0 0 chr9 26157785 26157845 -97918327 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 784 1038 165 13 63 chr9 26159209 26159448 -97916724 + Lx2B LINE L1 6282 6508 -492 2 784 5803 7 1 0 chr9 26159444 26160228 -97915944 + L1Md_T LINE L1 5188 5972 -610 2 784 878 209 0 62 chr9 26160246 26160455 -97915717 - ORR1C2 LTR MaLR -181 203 8 2 784 1261 51 0 43 chr9 26160864 26161048 -97915124 + L1Md_F2 LINE L1 6407 6582 0 2 784 307 331 48 78 chr9 26161056 26161223 -97914949 + L1M2 LINE L1 2808 2969 -3174 2 784 265 321 79 3 chr9 26161301 26161670 -97914502 + L1M2 LINE L1 3098 3494 -2649 2 784 463 250 55 6 chr9 26161811 26161992 -97914180 + L1M2 LINE L1 5386 5575 -716 2 784 602 289 26 65 chr9 26162007 26162240 -97913932 + B3A SINE B2 5 216 0 2 784 22 35 0 0 chr9 26162448 26162477 -97913695 + AT_rich Low_complexity Low_complexity 1 29 0 2 784 256 344 111 47 chr9 26162838 26163009 -97913163 + LTR16E1 LTR ERVL 199 380 -158 2 784 4103 74 8 60 chr9 26164041 26164646 -97911526 - L1_Mus2 LINE L1 -1 6565 5992 2 784 21 36 0 0 chr9 26165669 26165697 -97910475 + AT_rich Low_complexity Low_complexity 1 28 0 2 784 411 340 49 0 chr9 26165741 26165903 -97910269 + Lx8 LINE L1 7159 7328 -145 2 784 3219 39 26 3 chr9 26166521 26166908 -97909264 + MTA_Mm LTR MaLR 1 396 0 2 784 1547 224 75 0 chr9 26168208 26168557 -97907615 + MTD LTR MaLR 32 406 -13 2 784 1646 252 75 13 chr9 26168760 26169230 -97906942 - Lx9 LINE L1 -1 7643 7145 2 784 249 62 0 0 chr9 26169226 26169258 -97906914 + Lx9 LINE L1 6978 7009 -635 2 784 1025 268 62 69 chr9 26169337 26169803 -97906369 - L1MC4 LINE L1 -882 7079 6643 2 784 24 32 0 0 chr9 26170410 26170441 -97905731 + AT_rich Low_complexity Low_complexity 1 31 0 2 784 529 238 66 59 chr9 26170463 26170615 -97905557 - RSINE1 SINE B4 -11 154 2 2 784 6640 37 24 1 chr9 26170643 26171398 -97904774 + L1Md_F2 LINE L1 5810 6581 -1 2 784 429 70 0 0 chr9 26171520 26171577 -97904595 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 784 225 0 0 0 chr9 26171651 26171676 -97904496 + (T)n Simple_repeat Simple_repeat 1 25 0 2 784 197 351 105 13 chr9 26173806 26173959 -97902213 + L2 LINE L2 997 1163 -2256 2 784 234 0 0 0 chr9 26175619 26175645 -97900527 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 784 561 268 94 43 chr9 26176304 26176581 -97899591 - L1M4 LINE L1 -955 5191 4901 2 784 511 203 97 8 chr9 26176647 26176781 -97899391 - MTD LTR MaLR -2 417 272 2 784 211 50 24 48 chr9 26176823 26176865 -97899307 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 784 636 286 44 22 chr9 26176890 26177162 -97899010 + L1_Rod LINE L1 1560 1837 -4010 2 784 539 318 91 0 chr9 26177196 26177350 -97898822 - MTD LTR MaLR -209 210 43 2 784 274 339 37 0 chr9 26177390 26177499 -97898673 + PB1 SINE Alu 13 125 -2 2 784 411 56 0 0 chr9 26177553 26177607 -97898565 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 784 296 368 44 7 chr9 26177609 26177746 -97898426 - B1F1 SINE Alu -7 142 1 2 784 597 259 47 97 chr9 26177835 26178113 -97898059 - L1MC LINE L1 -616 5728 5465 2 784 449 336 48 30 chr9 26178121 26178351 -97897821 - MLT1A1 LTR MaLR 0 408 175 2 784 449 194 0 0 chr9 26178357 26178429 -97897743 - RMER1B Other Other -820 246 175 2 784 2836 268 77 66 chr9 26178427 26179498 -97896674 + RMER1A Other Other 45 1020 -10 2 784 536 130 11 0 chr9 26179515 26179607 -97896565 + (GA)n Simple_repeat Simple_repeat 1 93 0 2 784 426 340 60 0 chr9 26179619 26179769 -97896403 - MLT1A1 LTR MaLR -248 160 2 2 784 430 272 24 0 chr9 26179806 26179975 -97896197 - L1MC LINE L1 -743 5403 5229 2 784 308 201 52 9 chr9 26179970 26180083 -97896089 - L1M LINE L1 -1056 5388 5269 2 784 3438 38 10 0 chr9 26180233 26180625 -97895547 + MTA_Mm LTR MaLR 1 396 0 2 784 453 76 0 0 chr9 26180742 26180808 -97895364 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 784 2271 179 50 12 chr9 26181383 26181785 -97894387 - MTC LTR MaLR 0 421 5 2 784 222 277 0 0 chr9 26181912 26181959 -97894213 + (CACG)n Simple_repeat Simple_repeat 1 47 0 2 784 24 0 0 0 chr9 26182759 26182783 -97893389 + AT_rich Low_complexity Low_complexity 1 24 0 2 784 331 300 99 11 chr9 26184411 26184593 -97891579 + L3 LINE CR1 3542 3739 -750 2 784 197 320 79 73 chr9 26184613 26184778 -97891394 - L2c LINE L2 -200 3187 3022 2 784 287 294 45 114 chr9 26185077 26185323 -97890849 + MLT1A LTR MaLR 62 290 -84 2 784 6418 110 53 1 chr9 26185560 26186587 -97889585 - L1_Mus4 LINE L1 0 6636 5532 2 784 195 129 0 0 chr9 26187090 26187121 -97889051 + (CCA)n Simple_repeat Simple_repeat 1 31 0 2 784 288 130 0 0 chr9 26187764 26187810 -97888362 + (T)n Simple_repeat Simple_repeat 1 46 0 2 784 3662 92 14 24 chr9 26187812 26188312 -97887860 - L1Md_F2 LINE L1 -2 6580 6086 2 784 6071 49 1 8 chr9 26188312 26189256 -97886916 + L1Md_F2 LINE L1 5144 6080 -502 2 784 21 36 0 0 chr9 26189586 26189614 -97886558 + AT_rich Low_complexity Low_complexity 1 28 0 2 784 233 307 26 10 chr9 26190579 26190688 -97885484 - MIR SINE MIR -28 240 120 2 784 234 250 146 11 chr9 26191506 26191595 -97884577 - L2a LINE L2 0 3426 3326 2 784 535 332 76 17 chr9 26192188 26192479 -97883693 - MLT1D LTR MaLR -174 331 24 2 784 2664 210 67 110 chr9 26192751 26192982 -97883190 - RMER1B Other Other -380 686 519 2 784 738 43 0 0 chr9 26192982 26193076 -97883096 + (TC)n Simple_repeat Simple_repeat 1 94 0 2 784 2664 210 67 110 chr9 26193076 26193560 -97882612 - RMER1B Other Other -548 518 2 2 784 768 280 131 18 chr9 26193885 26194317 -97881855 + Lx8 LINE L1 6536 7016 -457 2 784 452 388 54 12 chr9 26194497 26194755 -97881417 + Lx8 LINE L1 7062 7330 -143 2 784 551 285 39 0 chr9 26194785 26194915 -97881257 - B3A SINE B2 -62 136 2 2 784 182 150 0 24 chr9 26195161 26195202 -97880970 + GA-rich Low_complexity Low_complexity 3 42 0 2 784 483 272 66 33 chr9 26195493 26195645 -97880527 + RSINE1 SINE B4 3 159 -6 2 784 300 70 0 0 chr9 26195655 26195698 -97880474 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 784 241 89 22 22 chr9 26195708 26195754 -97880418 + (TAA)n Simple_repeat Simple_repeat 2 47 0 2 784 1589 11 5 0 chr9 26196193 26196378 -97879794 - L1_Mm LINE L1 -508 5375 5190 2 784 5225 35 0 0 chr9 26196378 26196956 -97879216 - L1Md_T LINE L1 0 6582 6005 2 784 1992 14 0 0 chr9 26196969 26197191 -97878981 - L1_Mm LINE L1 -78 5805 5584 2 784 16855 19 0 0 chr9 26197190 26199098 -97877074 + L1_Mm LINE L1 3679 5586 -297 2 784 9386 15 0 0 chr9 26199098 26200094 -97876078 + L1Md_T LINE L1 5587 6582 0 2 784 6973 39 8 0 chr9 26200090 26200884 -97875288 + L1Md_T LINE L1 5783 6582 0 2 784 282 275 29 0 chr9 26200896 26200965 -97875207 + PB1D10 SINE Alu 42 112 -5 2 784 285 29 0 0 chr9 26200999 26201033 -97875139 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 784 1367 234 53 38 chr9 26201530 26201893 -97874279 + MTD LTR MaLR 3 419 0 2 784 26 0 0 0 chr9 26202755 26202781 -97873391 + AT_rich Low_complexity Low_complexity 1 26 0 2 784 6581 199 67 16 chr9 26202781 26203508 -97872664 - Lx5 LINE L1 0 7050 6300 2 784 2738 180 162 6 chr9 26203508 26204033 -97872139 - RMER19C LTR ERVK -4 607 1 2 784 6581 171 63 8 chr9 26204033 26204892 -97871280 - Lx5 LINE L1 -751 6299 5381 2 784 261 306 154 34 chr9 26205368 26205517 -97870655 - MIRc SINE MIR -71 197 31 2 784 498 33 0 0 chr9 26205915 26205975 -97870197 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 784 1336 257 47 12 chr9 26206322 26206661 -97869511 - ORR1E LTR MaLR -2 357 7 2 12 38788 33 1 1 chr9 26208084 26215998 -97860174 - L1Md_T LINE L1 0 6585 1 2 785 376 382 44 27 chr9 26216217 26216510 -97859662 + MLT1H1 LTR MaLR 242 539 -16 2 785 1367 67 11 0 chr9 26217300 26217480 -97858692 - L1_Mus3 LINE L1 -262 6376 6195 2 785 1330 86 25 29 chr9 26217485 26217689 -97858483 + L1_Mus3 LINE L1 6419 6621 -17 2 785 243 0 0 0 chr9 26217690 26217717 -97858455 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 785 23 0 0 0 chr9 26217940 26217963 -97858209 + AT_rich Low_complexity Low_complexity 1 23 0 2 785 2342 192 12 24 chr9 26218336 26218762 -97857410 + MTC LTR MaLR 1 421 0 2 785 213 154 0 0 chr9 26219008 26219047 -97857125 + T-rich Low_complexity Low_complexity 1 39 0 2 785 427 0 0 0 chr9 26219074 26219128 -97857044 - L1Md_T LINE L1 0 6582 6529 2 785 321 26 0 0 chr9 26219128 26219166 -97857006 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 785 517 349 30 19 chr9 26220409 26220678 -97855494 + L1M5 LINE L1 4567 4838 -1308 2 785 227 305 32 63 chr9 26220794 26220920 -97855252 - RLTR22_Mur LTR ERVK -418 1430 1309 2 785 261 139 0 0 chr9 26222303 26222346 -97853826 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 785 1696 233 109 55 chr9 26222373 26222968 -97853204 - Lx2B LINE L1 -5 6995 6369 2 785 366 61 0 0 chr9 26224297 26224346 -97851826 + (CACCAT)n Simple_repeat Simple_repeat 3 51 0 2 785 248 231 42 52 chr9 26224784 26224880 -97851292 - MLT1A1 LTR MaLR -2 406 312 2 785 307 97 56 0 chr9 26225039 26225111 -97851061 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 2 785 369 0 0 0 chr9 26225120 26225161 -97851011 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 785 279 275 14 0 chr9 26225175 26225244 -97850928 - ID4 SINE ID -13 70 1 2 785 253 333 0 13 chr9 26225250 26225329 -97850843 - ID4_ SINE ID -2 81 4 2 785 1845 228 40 2 chr9 26226374 26226775 -97849397 + Lx6 LINE L1 7030 7445 -15 2 785 996 95 0 0 chr9 26226792 26226929 -97849243 + B1_Mus2 SINE Alu 11 147 0 2 785 192 77 0 0 chr9 26226929 26226955 -97849217 + (A)n Simple_repeat Simple_repeat 1 26 0 3 785 4698 191 40 42 chr9 26227694 26228583 -97847589 - RMER19B LTR ERVK -12 890 3 3 785 270 0 0 0 chr9 26228744 26228774 -97847398 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 785 187 103 0 49 chr9 26229237 26229278 -97846894 + T-rich Low_complexity Low_complexity 3 41 0 3 785 260 283 165 39 chr9 26229279 26229382 -97846790 - PB1D10 SINE Alu -1 116 1 3 785 266 260 52 52 chr9 26229306 26229383 -97846789 - ID_B1 SINE B4 -67 157 81 3 785 21 0 0 0 chr9 26232227 26232248 -97843924 + AT_rich Low_complexity Low_complexity 1 21 0 3 785 639 60 0 0 chr9 26235430 26235514 -97840658 + (TG)n Simple_repeat Simple_repeat 2 85 0 3 785 309 274 43 34 chr9 26235617 26235734 -97840438 + L1ME3A LINE L1 6042 6159 -14 3 785 2433 298 107 40 chr9 26238182 26239348 -97836824 + Lx8 LINE L1 6225 7468 -5 3 785 252 270 0 0 chr9 26239291 26239365 -97836807 + RMER1C Other Other 1259 1332 -10 3 785 597 30 60 0 chr9 26239926 26240026 -97836146 + (TC)n Simple_repeat Simple_repeat 1 106 0 3 785 214 384 53 27 chr9 26240967 26241117 -97835055 + MIR SINE MIR 16 169 -93 3 785 265 252 111 0 chr9 26241737 26241836 -97834336 - Lx8 LINE L1 -1585 5888 5779 3 785 491 243 0 10 chr9 26242366 26242472 -97833700 - PB1D7 SINE Alu -43 106 7 3 785 207 0 0 0 chr9 26242693 26242716 -97833456 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 785 611 135 38 6 chr9 26243650 26243807 -97832365 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 3 785 1206 18 35 0 chr9 26243921 26244090 -97832082 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 3 785 207 323 70 24 chr9 26244115 26244321 -97831851 - MIRc SINE MIR -74 188 22 3 785 341 350 0 8 chr9 26244459 26244583 -97831589 + LTR16A LTR ERVL 329 451 0 3 785 21 0 0 0 chr9 26246239 26246260 -97829912 + AT_rich Low_complexity Low_complexity 1 21 0 3 785 388 338 79 95 chr9 26246354 26246769 -97829403 + MLT1C LTR MaLR 40 448 -19 3 785 323 264 0 0 chr9 26246772 26246844 -97829328 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 785 471 264 0 0 chr9 26246844 26247022 -97829150 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 785 464 276 0 0 chr9 26247292 26247390 -97828782 - RLTR20D LTR ERVK -6 562 465 3 785 474 96 0 0 chr9 26247392 26247465 -97828707 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 785 1645 246 62 17 chr9 26247477 26247882 -97828290 - RLTR20D LTR ERVK -95 473 51 3 785 304 343 114 27 chr9 26248245 26248464 -97827708 - MLT1L LTR MaLR -177 433 196 3 785 686 313 166 16 chr9 26249168 26249668 -97826504 - Lx8 LINE L1 -6 7467 6893 3 785 8165 178 110 8 chr9 26249667 26252604 -97823568 - Lx5 LINE L1 -104 6946 2902 3 785 3223 50 0 0 chr9 26252604 26253000 -97823172 - L1Md_F2 LINE L1 -12 6570 6175 3 785 7584 207 359 9 chr9 26253000 26254477 -97821695 - Lx5 LINE L1 -2985 2901 1330 3 785 1286 175 91 5 chr9 26254499 26254992 -97821180 - Lx5 LINE L1 -4436 1441 883 3 785 414 0 0 0 chr9 26255587 26255633 -97820539 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 785 777 283 68 53 chr9 26255633 26255954 -97820218 - Lx9 LINE L1 -664 6980 6655 3 785 3763 228 44 27 chr9 26255959 26257196 -97818976 + Lx9 LINE L1 4675 5971 -1673 3 785 488 16 16 0 chr9 26257374 26257435 -97818737 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 785 659 301 40 8 chr9 26257442 26257690 -97818482 + Lx9 LINE L1 6358 6613 -1031 3 785 238 333 17 9 chr9 26257801 26257916 -97818256 + CT-rich Low_complexity Low_complexity 5 120 0 3 785 797 300 34 41 chr9 26258886 26259178 -97816994 + B4A SINE B4 1 290 -2 3 785 441 0 0 0 chr9 26259236 26259285 -97816887 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 785 228 318 53 0 chr9 26259389 26259559 -97816613 - L1M5 LINE L1 -706 5456 5278 3 785 270 293 83 45 chr9 26259850 26260007 -97816165 + L1MC3 LINE L1 5932 6094 -1691 3 785 262 277 24 0 chr9 26260008 26260091 -97816081 + L1MC3 LINE L1 6036 6120 -1665 3 785 280 205 103 0 chr9 26260229 26260307 -97815865 + L1MC3 LINE L1 7168 7253 -532 3 785 426 318 20 5 chr9 26260323 26260525 -97815647 + L1MC3 LINE L1 7449 7653 -132 3 785 203 188 21 0 chr9 26262940 26262988 -97813184 + GA-rich Low_complexity Low_complexity 1 49 0 3 785 230 0 33 0 chr9 26263639 26263669 -97812503 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 3 785 2345 170 42 2 chr9 26264143 26264544 -97811628 - MTC LTR MaLR -4 417 1 3 785 5994 179 23 35 chr9 26264544 26265766 -97810406 - MTC-int LTR MaLR 0 1258 52 3 785 2141 163 39 12 chr9 26265784 26266194 -97809978 - MTC LTR MaLR 0 421 1 3 785 461 296 73 85 chr9 26266850 26267274 -97808898 + Lx8 LINE L1 7046 7464 -9 3 785 519 244 71 0 chr9 26267685 26267812 -97808360 + B1F SINE Alu 1 136 -13 3 785 423 0 0 0 chr9 26267812 26267859 -97808313 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 3 785 465 317 0 0 chr9 26267863 26267967 -97808205 + B1_Mur1 SINE Alu 5 108 -41 3 785 979 44 22 7 chr9 26267969 26268105 -97808067 + (GGAAA)n Simple_repeat Simple_repeat 3 140 0 3 785 270 0 0 0 chr9 26268110 26268140 -97808032 + (GGGGA)n Simple_repeat Simple_repeat 3 32 0 3 785 216 255 0 19 chr9 26268141 26268193 -97807979 + GA-rich Low_complexity Low_complexity 5 55 0 3 785 279 0 0 0 chr9 26268206 26268237 -97807935 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 785 306 0 0 0 chr9 26268237 26268270 -97807902 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 785 467 252 78 0 chr9 26268270 26268385 -97807787 + B1F SINE Alu 3 126 -23 3 785 568 335 127 50 chr9 26268696 26269663 -97806509 + L1ME3A LINE L1 1249 2311 -3855 3 785 265 305 11 22 chr9 26269670 26269851 -97806321 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 785 345 154 92 0 chr9 26269876 26269941 -97806231 + HAL1-3A_ME LINE L1 1975 2045 -813 3 785 227 269 25 25 chr9 26270379 26270497 -97805675 - L1M4b LINE L1 -2515 4491 4374 3 785 516 268 51 0 chr9 26270499 26270656 -97805516 - HAL1-2a_MD LINE L1 -511 2513 2349 3 785 224 30 0 29 chr9 26270915 26270949 -97805223 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 785 364 304 80 45 chr9 26270985 26271185 -97804987 - L1M4b LINE L1 -4870 2464 2258 3 785 467 388 91 54 chr9 26271258 26271301 -97804871 - L1M4b LINE L1 -6156 1178 1140 3 785 1130 66 13 0 chr9 26271301 26271453 -97804719 - L1_Mus2 LINE L1 0 6566 6413 3 785 467 388 91 54 chr9 26271453 26271979 -97804193 - L1M4b LINE L1 -6195 1139 588 3 785 379 285 141 26 chr9 26272001 26272192 -97803980 + L1ME3A LINE L1 2815 3027 -3119 3 785 22 0 0 0 chr9 26272466 26272488 -97803684 + AT_rich Low_complexity Low_complexity 1 22 0 3 785 439 301 110 58 chr9 26272523 26272678 -97803494 + B3 SINE B2 1 163 -53 3 785 309 109 0 0 chr9 26272680 26272726 -97803446 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 785 1711 160 9 20 chr9 26272744 26273058 -97803114 - RLTR10E LTR ERVK -5 470 1 3 785 2702 280 65 25 chr9 26273255 26274353 -97801819 - Lx9 LINE L1 -27 7617 6476 3 785 571 263 58 0 chr9 26274718 26274889 -97801283 + MLT2D LTR ERVL 1 181 -233 3 785 499 76 21 21 chr9 26274920 26275014 -97801158 + (TCTCTG)n Simple_repeat Simple_repeat 2 95 0 3 785 184 29 114 0 chr9 26275014 26275049 -97801123 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 3 785 1026 100 0 0 chr9 26275049 26275229 -97800943 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 785 207 240 13 39 chr9 26275261 26275339 -97800833 + (CAGAGA)n Simple_repeat Simple_repeat 1 76 0 3 785 455 309 30 0 chr9 26275446 26275614 -97800558 + L1ME3A LINE L1 5448 5620 -553 3 785 425 351 64 20 chr9 26275780 26276030 -97800142 + L1ME3A LINE L1 5692 5952 -221 3 785 532 200 109 15 chr9 26276434 26276634 -97799538 - ORR1D2 LTR MaLR 0 370 145 3 785 511 286 45 13 chr9 26276730 26276886 -97799286 - ORR1D2 LTR MaLR -206 164 4 3 785 545 298 50 5 chr9 26276962 26277161 -97799011 - MER3 DNA MER1_type 0 209 2 3 785 31 0 0 0 chr9 26279876 26279907 -97796265 + AT_rich Low_complexity Low_complexity 1 31 0 3 785 768 195 34 0 chr9 26279959 26280137 -97796035 + URR1B DNA MER1_type 1 199 -26 3 785 210 231 0 0 chr9 26280184 26280223 -97795949 + polypurine Low_complexity Low_complexity 3 41 0 3 785 457 231 76 108 chr9 26280434 26280657 -97795515 + RMER2 LTR ERV1 334 549 -18 3 785 403 265 5 0 chr9 26280868 26280966 -97795206 - Lx5 LINE L1 -346 6704 6617 3 785 257 146 0 0 chr9 26281301 26281342 -97794830 - URR1B DNA MER1_type -26 199 159 3 785 227 31 0 30 chr9 26283453 26283486 -97792686 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 785 359 265 9 64 chr9 26286413 26286522 -97789650 + PB1D10 SINE Alu 5 107 -10 3 785 702 282 3 35 chr9 26288158 26288368 -97787804 - B3A SINE B2 -12 204 2 3 785 210 361 0 78 chr9 26288381 26288422 -97787750 - MIRb SINE MIR -79 189 152 3 785 339 293 20 41 chr9 26288422 26288568 -97787604 - B1F SINE Alu -5 144 2 3 785 210 361 0 78 chr9 26288568 26288655 -97787517 - MIRb SINE MIR -117 151 71 3 785 573 273 31 31 chr9 26288809 26288968 -97787204 - RSINE1 SINE B4 -1 164 6 3 785 318 26 0 0 chr9 26289113 26289152 -97787020 + (A)n Simple_repeat Simple_repeat 1 39 0 3 785 1313 180 5 0 chr9 26289595 26289817 -97786355 + URR1B DNA MER1_type 1 223 -2 3 785 404 248 8 32 chr9 26291537 26291662 -97784510 + Lx6 LINE L1 7312 7433 -27 3 785 2028 176 57 16 chr9 26292445 26292832 -97783340 + MTB_Mm LTR MaLR 3 405 -2 3 785 465 312 63 5 chr9 26295065 26295271 -97780901 + L1MDa LINE L1 17 234 -6399 3 785 307 359 46 29 chr9 26295301 26295542 -97780630 + L1MDa LINE L1 309 553 -6080 3 785 778 273 100 22 chr9 26295898 26296438 -97779734 + L1MDa LINE L1 1114 1695 -4938 3 785 303 319 86 7 chr9 26296572 26296711 -97779461 - RSINE1 SINE B4 -14 151 2 3 785 225 167 0 0 chr9 26296815 26296869 -97779303 + CT-rich Low_complexity Low_complexity 2 55 0 3 785 270 0 0 0 chr9 26296870 26296900 -97779272 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 785 231 36 0 0 chr9 26296901 26296929 -97779243 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 785 509 287 70 40 chr9 26296929 26297256 -97778916 + L1MDa LINE L1 5754 6090 -543 3 785 31 68 0 0 chr9 26297259 26297318 -97778854 + AT_rich Low_complexity Low_complexity 1 59 0 3 785 724 115 16 0 chr9 26298881 26299003 -97777169 + (TC)n Simple_repeat Simple_repeat 1 124 0 3 785 360 0 0 0 chr9 26299393 26299433 -97776739 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 785 524 296 76 69 chr9 26299448 26299724 -97776448 - B4A SINE B4 -13 279 2 3 785 981 304 55 37 chr9 26300280 26300628 -97775544 - MTD LTR MaLR -14 405 52 3 785 227 274 79 29 chr9 26302195 26302334 -97773838 - L1MC5 LINE L1 -33 7928 7783 3 785 1041 298 82 16 chr9 26303085 26303535 -97772637 + RMER5 LTR ERV1 40 519 -15 3 785 399 21 0 0 chr9 26304760 26304808 -97771364 + (CAGA)n Simple_repeat Simple_repeat 2 49 0 3 785 575 307 201 32 chr9 26307594 26308027 -97768145 + L1MC1 LINE L1 5633 6138 -195 4 785 1382 206 112 10 chr9 26308162 26308534 -97767638 - MTD LTR MaLR -13 406 1 4 785 1005 278 150 44 chr9 26308754 26308853 -97767319 - L1MB1 LINE L1 -73 6116 6007 4 785 1579 53 0 5 chr9 26308853 26309042 -97767130 + B2_Mm2 SINE B2 3 190 -5 4 785 1005 278 150 44 chr9 26309042 26309214 -97766958 - L1MB1 LINE L1 -183 6006 5796 4 785 189 107 0 0 chr9 26309214 26309242 -97766930 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 785 1005 278 150 44 chr9 26309242 26309703 -97766469 - L1MB1 LINE L1 -394 5795 5305 4 785 249 83 0 0 chr9 26310354 26310390 -97765782 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 785 325 248 108 18 chr9 26310411 26310522 -97765650 - B1F SINE Alu -15 134 14 4 785 183 42 0 0 chr9 26310691 26310715 -97765457 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 785 6891 9 0 0 chr9 26312458 26313211 -97762961 + L1Md_T LINE L1 5830 6582 0 4 785 37251 50 3 1 chr9 26314235 26318836 -97757336 - L1Md_F3 LINE L1 0 6584 1980 4 785 387 0 0 0 chr9 26318836 26318879 -97757293 + (TTG)n Simple_repeat Simple_repeat 2 44 0 4 785 37251 103 9 2 chr9 26318879 26320467 -97755705 - L1Md_F3 LINE L1 -3904 1979 414 4 785 533 293 21 18 chr9 26322020 26322279 -97753893 + RLTR19 LTR ERVK 251 506 0 4 785 414 57 0 0 chr9 26323734 26323787 -97752385 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 785 767 11 11 0 chr9 26323804 26323896 -97752276 + (GA)n Simple_repeat Simple_repeat 2 94 0 4 785 298 299 31 0 chr9 26324022 26324119 -97752053 - ORR1E LTR MaLR -257 102 3 4 785 728 319 68 15 chr9 26325536 26325840 -97750332 - MLT1A0 LTR MaLR 0 390 33 4 785 694 206 16 0 chr9 26328165 26328425 -97747747 + (CA)n Simple_repeat Simple_repeat 1 264 0 4 785 748 172 0 27 chr9 26328460 26328645 -97747527 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 785 336 83 0 0 chr9 26328648 26328696 -97747476 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 785 1368 196 17 88 chr9 26329335 26329755 -97746417 - RLTR31_Mur LTR ERVK -125 428 39 4 785 308 186 69 28 chr9 26329784 26329856 -97746316 - RLTR18B LTR ERVK -259 253 179 4 785 421 251 50 96 chr9 26329897 26330117 -97746055 - RLTR18 LTR ERVK -310 306 97 4 785 1251 128 159 9 chr9 26330123 26330350 -97745822 - Lx2 LINE L1 0 6997 6597 4 785 305 146 20 172 chr9 26330351 26330450 -97745722 - RLTR18 LTR ERVK -421 91 8 4 785 1822 231 12 7 chr9 26330519 26330925 -97745247 - MTD LTR MaLR 0 419 12 4 785 248 352 18 9 chr9 26331109 26331218 -97744954 + MER45A DNA Tip100 60 169 -9 4 785 608 245 82 68 chr9 26331992 26332211 -97743961 + B4A SINE B4 71 292 0 4 785 183 321 0 0 chr9 26332881 26332937 -97743235 + MIRb SINE MIR 77 132 -136 4 785 1244 245 99 17 chr9 26333215 26333466 -97742706 + MTE2a LTR MaLR 7 282 -97 4 785 1526 211 47 25 chr9 26333466 26333632 -97742540 + ORR1D1 LTR MaLR 1 176 -198 4 785 810 31 0 0 chr9 26333632 26333729 -97742443 + (TC)n Simple_repeat Simple_repeat 2 98 0 4 785 1526 211 47 25 chr9 26333729 26333927 -97742245 + ORR1D1 LTR MaLR 177 373 -1 4 785 1244 245 99 17 chr9 26333927 26334020 -97742152 + MTE2a LTR MaLR 283 378 -1 4 785 2745 139 136 2 chr9 26334264 26334763 -97741409 + RMER2 LTR ERV1 2 567 0 4 785 451 302 120 25 chr9 26334930 26335256 -97740916 - ORR1E LTR MaLR -2 357 1 4 785 373 258 184 6 chr9 26335971 26336139 -97740033 + L1MC1 LINE L1 4989 5186 -960 4 785 1253 277 20 25 chr9 26336232 26336735 -97739437 + L1MC1 LINE L1 5216 5722 -2063 4 785 450 36 0 0 chr9 26336743 26336799 -97739373 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 785 449 288 0 0 chr9 26336815 26336926 -97739246 - RSINE1 SINE B4 -30 135 25 4 785 590 262 90 41 chr9 26336939 26337264 -97738908 + L1MC1 LINE L1 5705 6036 -308 4 785 441 106 35 12 chr9 26337286 26337372 -97738800 + GA-rich Low_complexity Low_complexity 4 91 0 4 785 423 0 0 0 chr9 26338670 26338717 -97737455 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 785 977 263 127 36 chr9 26339194 26339667 -97736505 + RMER5 LTR ERV1 2 517 -17 4 785 335 78 0 19 chr9 26340707 26340759 -97735413 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 785 600 73 0 0 chr9 26341109 26341191 -97734981 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 4 785 522 0 0 0 chr9 26341305 26341363 -97734809 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 785 481 255 0 36 chr9 26341363 26341473 -97734699 - PB1D10 SINE Alu -9 108 3 4 785 218 241 34 17 chr9 26343161 26343220 -97732952 - ID4 SINE ID -9 74 15 4 785 4365 211 86 26 chr9 26343406 26344553 -97731619 + Lx7 LINE L1 6463 7695 -1 4 98 8083 140 9 6 chr9 26344681 26346052 -97730120 - L1_Mur1 LINE L1 -1554 4332 2958 4 786 542 183 10 0 chr9 26346062 26346166 -97730006 + Lx3C LINE L1 6611 6715 -261 4 786 507 282 100 116 chr9 26346469 26346830 -97729342 + MTEa LTR MaLR 1 355 -24 4 786 22 0 0 0 chr9 26346911 26346933 -97729239 + AT_rich Low_complexity Low_complexity 1 22 0 4 786 420 37 0 0 chr9 26347267 26347321 -97728851 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 786 188 299 110 30 chr9 26347618 26347718 -97728454 + MIRc SINE MIR 11 118 -150 4 786 252 250 87 14 chr9 26348564 26348702 -97727470 + L1ME1 LINE L1 5815 5962 -217 4 786 437 347 73 15 chr9 26350309 26350563 -97725609 + B4A SINE B4 1 270 -22 4 786 405 0 0 0 chr9 26350622 26350667 -97725505 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 786 311 319 129 56 chr9 26350996 26351352 -97724820 - MLT2C1 LTR ERVL 0 397 16 4 786 495 101 0 0 chr9 26353249 26353318 -97722854 + B2_Mm2 SINE B2 5 73 -122 4 786 522 0 0 0 chr9 26353318 26353376 -97722796 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 786 664 270 54 12 chr9 26354257 26354497 -97721675 + L1MC1 LINE L1 6075 6324 -9 4 786 228 348 125 30 chr9 26354719 26354983 -97721189 - MLT1E2 LTR MaLR -298 329 41 4 786 189 229 110 40 chr9 26355158 26355258 -97720914 - L3 LINE CR1 -4369 120 14 4 786 306 0 0 0 chr9 26356644 26356678 -97719494 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 4 786 446 239 4 43 chr9 26357650 26358154 -97718018 + C-rich Low_complexity Low_complexity 1 484 0 4 786 259 321 28 28 chr9 26359098 26359239 -97716933 + MIR3 SINE MIR 31 171 -37 4 786 200 182 0 43 chr9 26359695 26359741 -97716431 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 4 786 402 289 42 7 chr9 26359744 26359887 -97716285 - B1F SINE Alu -1 148 1 4 786 415 245 0 26 chr9 26359945 26360015 -97716157 - PB1D10 SINE Alu -7 110 43 4 786 4252 145 29 9 chr9 26360015 26360712 -97715460 + Lx LINE L1 5935 6645 -9 4 786 415 245 0 26 chr9 26360712 26360754 -97715418 - PB1D10 SINE Alu -75 42 2 4 786 262 301 54 0 chr9 26361853 26361946 -97714226 + MIRc SINE MIR 95 192 -76 4 786 850 314 53 12 chr9 26361964 26362286 -97713886 - MLT1A0 LTR MaLR -15 350 16 4 786 305 261 0 32 chr9 26363375 26363470 -97712702 + MER2 DNA MER2_type 84 175 -170 4 786 761 125 25 0 chr9 26363476 26363596 -97712576 + B2_Mm2 SINE B2 2 124 -71 4 786 324 70 0 0 chr9 26363624 26363667 -97712505 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 786 1166 202 195 13 chr9 26363711 26364052 -97712120 - MTD LTR MaLR -39 380 13 4 786 216 97 0 0 chr9 26364086 26364117 -97712055 + (CCA)n Simple_repeat Simple_repeat 1 31 0 4 786 189 0 0 0 chr9 26365181 26365202 -97710970 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 4 786 306 330 39 0 chr9 26365247 26365350 -97710822 - Lx8 LINE L1 -221 7252 7146 4 786 1212 193 10 49 chr9 26365368 26365656 -97710516 + L1_Mur3 LINE L1 2677 2953 -2927 4 786 753 288 140 26 chr9 26365714 26366092 -97710080 + Lx8 LINE L1 7046 7466 -7 4 786 538 203 90 19 chr9 26366112 26366341 -97709831 + L1_Mur3 LINE L1 3036 3272 -2608 4 786 3518 25 2 0 chr9 26366341 26366736 -97709436 - MTA_Mm LTR MaLR 0 396 1 4 786 9763 18 0 1 chr9 26366736 26367835 -97708337 - MTA_Mm-int LTR MaLR 0 1098 1 4 786 3522 18 5 0 chr9 26367835 26368229 -97707943 - MTA_Mm LTR MaLR 0 396 1 4 786 2666 84 3 13 chr9 26368503 26368875 -97707297 - L1Md_F2 LINE L1 0 6582 6215 4 786 231 238 104 45 chr9 26369935 26370089 -97706083 - L1MEg LINE L1 -4079 2121 1959 4 786 1026 154 124 5 chr9 26370095 26370297 -97705875 - URR1A DNA MER1_type 0 226 1 4 786 189 0 0 0 chr9 26370321 26370342 -97705830 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 786 3209 22 0 0 chr9 26370948 26371305 -97704867 + IAPEY2_LTR LTR ERVK 1 357 0 4 786 250 281 22 97 chr9 26371485 26371619 -97704553 - L1MEg LINE L1 -4719 1481 1358 4 786 397 309 64 72 chr9 26371752 26372057 -97704115 - L1MEg LINE L1 -5076 1124 803 4 786 646 286 48 5 chr9 26372057 26372243 -97703929 + B3A SINE B2 2 195 -3 4 786 334 366 45 77 chr9 26372243 26372343 -97703829 - L1MEg LINE L1 -5398 802 714 4 786 1115 82 0 7 chr9 26372395 26372542 -97703630 + B1_Mus2 SINE Alu 1 146 -1 4 786 2856 205 196 16 chr9 26372709 26373105 -97703067 + RMER17B LTR ERVK 1 427 -531 4 786 369 0 0 0 chr9 26373105 26373146 -97703026 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 786 297 0 0 0 chr9 26373146 26373178 -97702994 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 786 2856 205 196 16 chr9 26373178 26373582 -97702590 + RMER17B LTR ERVK 428 945 -13 4 786 8262 76 8 1 chr9 26373952 26375805 -97700367 + L1_Mus1 LINE L1 4705 6654 0 4 786 2766 306 107 16 chr9 26375913 26377040 -97699132 - Lx8 LINE L1 -157 7316 6087 4 786 234 254 48 0 chr9 26377164 26377227 -97698945 + PB1D10 SINE Alu 43 108 -9 4 786 631 124 14 0 chr9 26377283 26377428 -97698744 + (TAGA)n Simple_repeat Simple_repeat 2 148 0 4 786 6643 78 2 10 chr9 26378342 26379228 -97696944 + L1Md_F2 LINE L1 4707 5585 -298 4 786 7329 73 26 9 chr9 26379229 26380192 -97695980 + L1Md_F2 LINE L1 5587 6567 -15 4 786 210 71 0 0 chr9 26380192 26380220 -97695952 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 4 786 7329 73 26 9 chr9 26380220 26380233 -97695939 + L1Md_F2 LINE L1 6568 6579 -3 4 786 837 303 56 0 chr9 26380539 26380826 -97695346 - MER2 DNA MER2_type -42 303 1 4 786 23 0 0 0 chr9 26380873 26380896 -97695276 + AT_rich Low_complexity Low_complexity 1 23 0 4 786 216 0 0 0 chr9 26381156 26381180 -97694992 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 786 216 300 44 11 chr9 26381708 26381799 -97694373 - MIR SINE MIR -49 213 120 4 786 21 0 0 0 chr9 26383925 26383946 -97692226 + AT_rich Low_complexity Low_complexity 1 21 0 4 786 1199 48 14 0 chr9 26384196 26384341 -97691831 + B1_Mus2 SINE Alu 1 147 0 4 786 214 171 0 0 chr9 26384341 26384382 -97691790 + A-rich Low_complexity Low_complexity 6 46 0 4 786 3175 40 42 0 chr9 26384476 26384856 -97691316 + MTA_Mm LTR MaLR 1 396 0 5 786 770 192 14 0 chr9 26386913 26387059 -97689113 + B1_Mur4 SINE Alu 1 148 -2 5 786 223 354 31 11 chr9 26387481 26387608 -97688564 + MIR3 SINE MIR 52 175 -33 5 786 198 0 0 0 chr9 26388234 26388256 -97687916 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 786 534 301 147 19 chr9 26388557 26388869 -97687303 + MTE2b LTR MaLR 19 370 -9 5 786 219 36 0 0 chr9 26388908 26388936 -97687236 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 786 910 116 0 0 chr9 26388936 26389074 -97687098 - B1_Mus1 SINE Alu -10 138 1 5 786 675 239 6 63 chr9 26389076 26389250 -97686922 - B3A SINE B2 0 198 35 5 786 234 0 0 0 chr9 26389279 26389305 -97686867 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 786 272 286 0 0 chr9 26389479 26389563 -97686609 - L1MC2 LINE L1 -167 6352 6269 5 786 899 146 18 6 chr9 26389600 26389765 -97686407 + URR1A DNA MER1_type 60 226 0 5 786 252 224 0 0 chr9 26389765 26389823 -97686349 - L1MC2 LINE L1 -244 6275 6218 5 786 863 268 110 34 chr9 26390019 26390919 -97685253 - L1MC2 LINE L1 -588 5931 4958 5 786 419 310 10 0 chr9 26390958 26391058 -97685114 + B1_Mur2 SINE Alu 2 102 -47 5 786 1607 47 19 9 chr9 26391075 26391289 -97684883 + L1Md_F3 LINE L1 6369 6584 0 5 786 3033 220 114 5 chr9 26391362 26392143 -97684029 - Lx9 LINE L1 -7 7637 6772 5 786 1384 269 45 16 chr9 26392141 26392650 -97683522 - L1MC2 LINE L1 -2018 4303 3780 5 786 427 279 148 24 chr9 26392701 26392837 -97683335 + B3A SINE B2 3 162 -36 5 786 438 20 0 0 chr9 26392837 26392888 -97683284 + (CATA)n Simple_repeat Simple_repeat 4 54 0 5 786 427 279 148 24 chr9 26392888 26392920 -97683252 + B3A SINE B2 163 192 -6 5 786 482 228 26 9 chr9 26393557 26393672 -97682500 - MT2A LTR ERVL -71 462 346 5 786 9614 194 51 24 chr9 26393673 26395831 -97680341 + Lx7 LINE L1 5472 7694 -2 5 786 250 213 213 0 chr9 26395842 26395917 -97680255 - MT2A LTR ERVL -172 361 271 5 786 1064 22 7 0 chr9 26396047 26396184 -97679988 + L1Md_F2 LINE L1 6444 6581 -1 5 786 869 260 96 74 chr9 26396208 26396649 -97679523 + L1VL1 LINE L1 4 403 -6019 5 786 356 248 65 19 chr9 26396808 26396915 -97679257 + L1Md_F LINE L1 674 785 -5831 5 786 19984 173 97 5 chr9 26396923 26401422 -97674750 + L1Md_F LINE L1 725 5589 -297 5 786 9181 5 0 0 chr9 26401422 26402418 -97673754 + L1Md_T LINE L1 5587 6582 0 5 786 12739 109 6 1 chr9 26402430 26404283 -97671889 + Lx5 LINE L1 4056 5917 -1133 5 786 284 157 8 0 chr9 26404291 26404347 -97671825 - MT2A LTR ERVL -528 73 16 5 786 2265 294 101 24 chr9 26404761 26406151 -97670021 - L1MC2 LINE L1 -2540 3781 2285 5 786 936 167 0 0 chr9 26406350 26406500 -97669672 + B1_Mur4 SINE Alu 1 150 0 5 786 691 22 33 0 chr9 26406540 26406632 -97669540 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 5 786 212 318 23 0 chr9 26406874 26406962 -97669210 - B4A SINE B4 -201 91 2 5 786 431 257 18 18 chr9 26406990 26407101 -97669071 - PB1D7 SINE Alu 0 120 10 5 786 286 306 51 39 chr9 26407107 26407362 -97668810 - L1MC2 LINE L1 -4274 2234 1977 5 786 597 292 304 20 chr9 26407362 26407657 -97668515 - MTEb LTR MaLR 0 379 1 5 786 543 234 168 39 chr9 26407693 26408026 -97668146 - L1MC2 LINE L1 -4605 1903 1528 5 786 951 273 101 21 chr9 26408029 26408366 -97667806 + MTE2a LTR MaLR 1 364 -15 5 786 242 338 137 34 chr9 26408366 26408599 -97667573 - L1MC2 LINE L1 -6043 465 209 5 786 543 203 55 0 chr9 26408632 26408760 -97667412 - L1MC2 LINE L1 -6370 138 4 5 786 896 278 62 22 chr9 26408808 26409209 -97666963 - L1MC3 LINE L1 -75 7710 7294 5 786 370 327 47 33 chr9 26411111 26411323 -97664849 - ORR1E LTR MaLR -143 216 2 5 786 303 234 73 88 chr9 26411515 26411651 -97664521 - MLT1A1 LTR MaLR -270 138 5 5 786 193 239 87 29 chr9 26412002 26412071 -97664101 + MIRb SINE MIR 123 195 -73 5 786 3878 109 21 3 chr9 26414577 26415149 -97661023 - Lx3_Mus LINE L1 -8 7001 6420 5 786 276 211 11 32 chr9 26417180 26417273 -97658899 + CT-rich Low_complexity Low_complexity 5 95 0 5 786 245 271 0 0 chr9 26417775 26417834 -97658338 + (CATA)n Simple_repeat Simple_repeat 2 60 0 5 786 188 383 87 0 chr9 26420128 26420243 -97655929 - MIRb SINE MIR -125 143 19 5 786 333 0 0 0 chr9 26420936 26420973 -97655199 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 786 207 0 0 0 chr9 26420973 26420995 -97655177 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 786 637 126 69 13 chr9 26422984 26423293 -97652879 + (TAGA)n Simple_repeat Simple_repeat 1 326 0 5 786 14599 104 7 12 chr9 26424290 26427059 -97649113 + L1Md_F2 LINE L1 446 3196 -2687 5 786 4968 59 2 0 chr9 26427055 26427669 -97648503 + L1Md_F2 LINE L1 4972 5586 -297 5 786 8024 52 2 4 chr9 26427669 26428665 -97647507 + L1Md_F2 LINE L1 5587 6580 -2 5 786 2853 56 2 12 chr9 26429268 26429668 -97646504 + MTB_Mm LTR MaLR 10 405 -2 5 786 1107 82 0 7 chr9 26429732 26429880 -97646292 - B1_Mus1 SINE Alu 0 148 2 5 786 283 305 22 22 chr9 26430243 26430377 -97645795 + MIR SINE MIR 39 172 -90 5 786 764 74 0 9 chr9 26431053 26431162 -97645010 + (GGGAGA)n Simple_repeat Simple_repeat 6 113 0 5 786 621 0 0 0 chr9 26431778 26431847 -97644325 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 786 1390 102 0 0 chr9 26432194 26432381 -97643791 + B2_Mm2 SINE B2 1 187 -8 5 786 1006 233 0 5 chr9 26432818 26433021 -97643151 - B3 SINE B2 -7 209 8 5 786 486 0 0 0 chr9 26435545 26435599 -97640573 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 786 1542 241 121 25 chr9 26435626 26436112 -97640060 - MT2A LTR ERVL 0 533 1 5 786 1605 230 50 94 chr9 26436112 26436674 -97639498 - MERVL_2A-int LTR ERVL 0 5761 5225 5 786 950 157 39 6 chr9 26436683 26436862 -97639310 + ORR1C2 LTR MaLR 1 185 -199 5 786 626 148 9 0 chr9 26436862 26436977 -97639195 + CT-rich Low_complexity Low_complexity 1 116 0 5 786 861 187 144 0 chr9 26437020 26437207 -97638965 + ORR1C2 LTR MaLR 171 384 0 5 786 583 170 37 9 chr9 26437207 26437314 -97638858 - MERVL_2A-int LTR ERVL -545 5216 5107 5 786 7078 226 38 9 chr9 26437428 26438934 -97637238 - MERVL_2A-int LTR ERVL -909 4852 3303 5 786 1240 280 12 3 chr9 26438934 26439271 -97636901 - MT2A LTR ERVL -184 349 10 5 786 459 313 97 20 chr9 26439320 26439568 -97636604 - Lx8 LINE L1 -2 7471 7205 5 786 554 184 0 6 chr9 26439599 26439779 -97636393 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 786 434 186 0 7 chr9 26439804 26439950 -97636222 + (TG)n Simple_repeat Simple_repeat 1 145 0 5 786 344 291 39 117 chr9 26439950 26440129 -97636043 - RSINE1 SINE B4 0 165 1 5 786 229 393 100 0 chr9 26440506 26440656 -97635516 - MIRb SINE MIR -83 185 21 5 786 304 381 21 27 chr9 26440741 26440927 -97635245 - MER5A DNA MER1_type -4 185 1 5 786 277 303 119 0 chr9 26442176 26442285 -97633887 + MLT1B LTR MaLR 245 366 -24 5 786 759 139 36 0 chr9 26443989 26444126 -97632046 + B1_Mur2 SINE Alu 2 143 -6 5 786 233 299 104 47 chr9 26445816 26446009 -97630163 + MLT1A1 LTR MaLR 1 204 -204 5 786 504 0 0 0 chr9 26446214 26446270 -97629902 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 786 440 320 126 27 chr9 26446333 26446808 -97629364 + L1MB8 LINE L1 5480 5997 -181 5 786 198 0 0 0 chr9 26449955 26449977 -97626195 + (A)n Simple_repeat Simple_repeat 1 22 0 5 786 1625 293 159 13 chr9 26450827 26451571 -97624601 + Lx9 LINE L1 6714 7565 -79 5 786 34 0 0 0 chr9 26451637 26451671 -97624501 + AT_rich Low_complexity Low_complexity 1 34 0 5 786 25 31 0 0 chr9 26451766 26451798 -97624374 + AT_rich Low_complexity Low_complexity 1 32 0 5 786 363 23 0 0 chr9 26451851 26451895 -97624277 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 786 6948 42 1 5 chr9 26451906 26452744 -97623428 + L1Md_F2 LINE L1 5745 6579 -3 5 786 888 282 60 30 chr9 26453076 26453412 -97622760 + MLT1B LTR MaLR 1 346 -44 5 786 474 291 84 20 chr9 26454978 26455181 -97620991 + B3 SINE B2 1 216 0 5 786 421 313 43 6 chr9 26455388 26455552 -97620620 + MLT1A LTR MaLR 205 374 0 5 786 204 358 47 7 chr9 26456295 26456444 -97619728 - L2 LINE L2 -338 3081 2927 5 786 888 270 121 25 chr9 26456641 26457047 -97619125 - L1MA4 LINE L1 -385 5915 5471 5 786 303 316 99 7 chr9 26459814 26459966 -97616206 - MIRb SINE MIR -96 172 2 5 786 192 261 148 0 chr9 26461069 26461157 -97615015 + MIRc SINE MIR 35 135 -133 5 786 2504 70 0 9 chr9 26461359 26461690 -97614482 - L1Md_F2 LINE L1 -7 6575 6248 5 786 2514 87 2 1 chr9 26461690 26462023 -97614149 + L1Md_F2 LINE L1 5941 6249 -333 5 786 335 345 88 50 chr9 26462899 26463238 -97612934 - MLT1L LTR MaLR -102 508 157 5 786 700 216 163 31 chr9 26463346 26463454 -97612718 - URR1B DNA MER1_type -3 222 83 5 786 438 20 0 0 chr9 26463454 26463505 -97612667 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 786 700 216 163 31 chr9 26463505 26463592 -97612580 - URR1B DNA MER1_type -143 82 2 5 786 1197 247 39 13 chr9 26464340 26464652 -97611520 + MER2 DNA MER2_type 13 332 -13 5 786 297 211 28 14 chr9 26466087 26466159 -97610013 + MT2A LTR ERVL 1 73 -528 5 786 581 0 14 0 chr9 26466177 26466246 -97609926 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 5 786 279 114 0 0 chr9 26466247 26466291 -97609881 + MT2A LTR ERVL 490 533 0 5 786 23 0 0 0 chr9 26466296 26466319 -97609853 + AT_rich Low_complexity Low_complexity 1 23 0 5 786 328 264 3 22 chr9 26466857 26466952 -97609220 + MIRb SINE MIR 29 127 -141 5 786 210 304 106 21 chr9 26469530 26469624 -97606548 - MIR SINE MIR -130 138 37 5 786 213 146 0 0 chr9 26470102 26470150 -97606022 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 786 840 71 0 0 chr9 26471090 26471202 -97604970 + (TCC)n Simple_repeat Simple_repeat 3 114 0 5 786 1671 145 52 10 chr9 26472522 26472828 -97603344 - ORR1A2 LTR MaLR -8 319 1 5 786 259 385 51 78 chr9 26472918 26473468 -97602704 + MLT1J-int LTR MaLR 587 1121 -266 5 786 518 160 37 9 chr9 26473469 26473576 -97602596 - RMER1B Other Other -11 1055 946 5 786 233 203 125 0 chr9 26473565 26473629 -97602543 + RMER1B Other Other 864 935 -131 5 786 1198 215 22 4 chr9 26473628 26473857 -97602315 - RMER1A Other Other -735 295 63 5 786 192 77 0 0 chr9 26474499 26474525 -97601647 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 786 296 388 57 0 chr9 26474941 26475150 -97601022 - MER58A DNA MER1_type -3 221 1 5 786 1263 41 0 23 chr9 26475932 26476108 -97600064 + L1Md_F2 LINE L1 6411 6582 0 5 787 253 103 52 0 chr9 26476747 26476805 -97599367 + T-rich Low_complexity Low_complexity 2 62 0 5 787 306 290 141 61 chr9 26476870 26477068 -97599104 + L1_Rod LINE L1 5631 5844 -3 5 787 687 285 21 148 chr9 26477068 26477398 -97598774 + B4A SINE B4 3 290 -2 5 787 253 336 17 17 chr9 26477401 26477516 -97598656 + (CATATA)n Simple_repeat Simple_repeat 6 120 0 5 787 281 281 49 0 chr9 26477422 26477504 -97598668 + (CATG)n Simple_repeat Simple_repeat 3 88 0 6 787 578 310 57 25 chr9 26479484 26479729 -97596443 - MER74B LTR ERVL -7 615 363 6 787 284 330 38 86 chr9 26479786 26479896 -97596276 - MER74B LTR ERVL -371 251 142 6 787 918 266 5 9 chr9 26479896 26480112 -97596060 + B3 SINE B2 1 215 -1 6 787 284 330 38 86 chr9 26480112 26480210 -97595962 - MER74B LTR ERVL -481 141 53 6 787 544 191 135 15 chr9 26480608 26480741 -97595431 - B3A SINE B2 -46 152 4 6 787 250 278 143 19 chr9 26480829 26480983 -97595189 + MER2 DNA MER2_type 8 180 -165 6 787 715 230 67 118 chr9 26480996 26481134 -97595038 - RLTR14 LTR ERV1 0 382 255 6 787 1172 61 0 7 chr9 26481134 26481283 -97594889 - B1_Mus1 SINE Alu 0 148 1 6 787 715 230 67 118 chr9 26481283 26481459 -97594713 - RLTR14 LTR ERV1 -128 254 84 6 787 448 236 0 0 chr9 26481458 26481564 -97594608 - RLTR14 LTR ERV1 -267 115 10 6 787 1567 202 91 0 chr9 26481933 26482275 -97593897 - MTC LTR MaLR 0 421 49 6 787 320 256 318 42 chr9 26482287 26482500 -97593672 + MTEb LTR MaLR 107 379 0 6 787 510 207 18 91 chr9 26482585 26482750 -97593422 - ORR1D2 LTR MaLR -59 311 159 6 787 2711 67 11 3 chr9 26482754 26483112 -97593060 + L1Md_F2 LINE L1 6221 6581 -1 6 787 271 215 15 15 chr9 26483114 26483180 -97592992 - ORR1D2 LTR MaLR -353 66 1 6 787 686 210 0 123 chr9 26483288 26483363 -97592809 + B1_Mur4 SINE Alu 1 66 -84 6 787 1102 75 0 6 chr9 26483363 26483525 -97592647 - L1_Mus3 LINE L1 -16 6622 6462 6 787 686 210 0 123 chr9 26483525 26483612 -97592560 + B1_Mur4 SINE Alu 67 143 -7 6 787 289 281 156 0 chr9 26483966 26484094 -97592078 - Lx6 LINE L1 -43 7417 7270 6 787 1319 231 52 12 chr9 26484100 26484418 -97591754 + Lx5 LINE L1 6168 6712 -748 6 787 204 365 40 33 chr9 26485499 26485649 -97590523 + L2b LINE L2 3225 3375 0 6 787 285 29 0 0 chr9 26485694 26485728 -97590444 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 787 310 232 53 0 chr9 26485732 26485827 -97590345 + Lx9 LINE L1 7511 7610 -34 6 787 321 372 0 8 chr9 26485844 26486005 -97590167 + GA-rich Low_complexity Low_complexity 1 159 0 6 787 8203 119 2 48 chr9 26486964 26488315 -97587857 - Lx2A LINE L1 0 7000 5728 6 787 183 286 0 0 chr9 26488412 26488468 -97587704 + MIRb SINE MIR 133 188 -80 6 787 1017 272 28 117 chr9 26488661 26489056 -97587116 + MTE2a LTR MaLR 19 378 -1 6 787 185 83 28 0 chr9 26489100 26489136 -97587036 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 6 787 247 333 50 40 chr9 26489544 26489644 -97586528 + ORR1E LTR MaLR 19 119 -240 6 787 30 0 0 0 chr9 26491029 26491059 -97585113 + AT_rich Low_complexity Low_complexity 1 30 0 6 787 489 301 75 21 chr9 26491073 26491260 -97584912 - B3A SINE B2 -1 197 1 6 787 1578 261 74 32 chr9 26491906 26492433 -97583739 - RMER15 LTR ERVL 0 575 27 6 787 252 0 0 0 chr9 26492814 26492842 -97583330 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 787 235 314 118 80 chr9 26495236 26495423 -97580749 + MLT1A1 LTR MaLR 22 215 -193 6 787 229 51 0 49 chr9 26495834 26495875 -97580297 + (TCTCC)n Simple_repeat Simple_repeat 4 42 0 6 787 468 0 0 0 chr9 26495898 26495950 -97580222 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 787 198 0 0 0 chr9 26495950 26495971 -97580201 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 787 578 294 10 67 chr9 26497203 26497411 -97578761 - B3A SINE B2 -2 196 1 6 787 1385 206 93 6 chr9 26498086 26498408 -97577764 - Lx7 LINE L1 -1696 6000 5651 6 787 658 263 48 19 chr9 26498811 26499020 -97577152 - MLT2C2 LTR ERVL -237 227 13 6 787 207 0 0 0 chr9 26499020 26499043 -97577129 + (A)n Simple_repeat Simple_repeat 1 23 0 6 787 1172 247 46 35 chr9 26499194 26499626 -97576546 - Kanga1b DNA Tc2 -46 733 297 6 787 392 247 0 0 chr9 26500995 26501072 -97575100 + ID4_ SINE ID 2 78 -5 1 787 466 315 83 18 chr9 26501564 26501781 -97574391 - MER21B LTR ERV1 -60 803 573 2 787 5165 86 3 6 chr9 26503392 26504092 -97572080 - L1_Mus2 LINE L1 -1 6565 5868 3 787 4145 279 52 53 chr9 26504322 26505744 -97570428 + Lx8 LINE L1 6052 7471 -2 4 787 369 0 0 0 chr9 26506631 26506672 -97569500 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 787 294 29 0 0 chr9 26506672 26506706 -97569466 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 787 2837 45 0 3 chr9 26508473 26508811 -97567361 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 787 57171 20 13 5 chr9 26508811 26515236 -97560936 - IAPEz-int LTR ERVK 0 6481 8 7 787 2837 45 0 3 chr9 26515236 26515574 -97560598 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 787 447 68 0 0 chr9 26521262 26521321 -97554851 + (CCCCCT)n Simple_repeat Simple_repeat 4 62 0 8 787 361 297 10 25 chr9 26521321 26521460 -97554712 - ID4 SINE ID -19 133 2 9 787 218 256 0 0 chr9 26521657 26521700 -97554472 + polypyrimidine Low_complexity Low_complexity 6 48 0 1 787 241 315 19 39 chr9 26521700 26521829 -97554343 - BC1_Mm scRNA scRNA -26 126 1 1 787 23 33 0 0 chr9 26522603 26522633 -97553539 + AT_rich Low_complexity Low_complexity 1 30 0 1 787 571 276 84 104 chr9 26522681 26522883 -97553289 + B3A SINE B2 1 198 0 1 787 337 283 141 25 chr9 26523067 26523230 -97552942 - L1M5 LINE L1 -641 5483 5302 1 787 3572 58 0 7 chr9 26523794 26524242 -97551930 - L1Md_F2 LINE L1 -2 6580 6136 1 787 401 0 0 20 chr9 26524627 26524677 -97551495 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 1 787 275 213 13 0 chr9 26524683 26524758 -97551414 + GA-rich Low_complexity Low_complexity 3 78 0 1 787 437 0 0 19 chr9 26524804 26524858 -97551314 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 1 787 1046 96 0 7 chr9 26524858 26524996 -97551176 - B1_Mus1 SINE Alu -8 140 4 1 787 436 193 23 116 chr9 26524884 26525013 -97551159 - MT2B LTR ERVL -337 264 148 2 787 195 305 107 25 chr9 26525648 26525769 -97550403 + MIRb SINE MIR 24 154 -114 2 787 330 122 54 0 chr9 26526822 26526896 -97549276 + CT-rich Low_complexity Low_complexity 2 79 0 2 787 253 284 55 33 chr9 26529079 26529170 -97547002 - MLT-int LTR MaLR -823 912 820 2 787 187 355 53 0 chr9 26529833 26529909 -97546263 + MER5A DNA MER1_type 102 181 -8 2 787 218 330 19 37 chr9 26530382 26530489 -97545683 + MIRc SINE MIR 119 223 -45 2 787 186 283 22 0 chr9 26531242 26531288 -97544884 - L2c LINE L2 -11 3376 3330 2 787 244 304 69 94 chr9 26531780 26531940 -97544232 + MIR3 SINE MIR 47 202 -6 2 787 663 48 0 0 chr9 26534730 26534813 -97541359 + (TC)n Simple_repeat Simple_repeat 1 83 0 2 787 438 336 43 0 chr9 26534850 26534990 -97541182 - MER117 DNA MER1_type -51 146 1 2 787 198 0 0 0 chr9 26535846 26535868 -97540304 + (T)n Simple_repeat Simple_repeat 1 22 0 3 787 279 0 0 0 chr9 26536105 26536136 -97540036 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 787 243 0 0 0 chr9 26536136 26536162 -97540010 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 787 199 237 68 0 chr9 26536252 26536311 -97539861 + L4 LINE RTE 243 305 -1724 3 787 263 213 13 0 chr9 26536565 26536640 -97539532 + (TGGA)n Simple_repeat Simple_repeat 3 78 0 3 787 468 0 0 0 chr9 26536918 26536970 -97539202 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 787 379 358 31 59 chr9 26537329 26537584 -97538588 + MIR SINE MIR 12 259 -3 3 787 1134 35 0 0 chr9 26540435 26540578 -97535594 + (GA)n Simple_repeat Simple_repeat 2 144 0 3 787 22 0 0 0 chr9 26541437 26541459 -97534713 + GC_rich Low_complexity Low_complexity 1 22 0 3 787 396 0 0 0 chr9 26541862 26541906 -97534266 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 787 440 35 17 0 chr9 26542782 26542840 -97533332 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 787 267 307 0 26 chr9 26544678 26544755 -97531417 - L2b LINE L2 -24 3351 3277 4 787 228 286 26 13 chr9 26545413 26545491 -97530681 - Charlie5 DNA MER1_type -2544 80 2 4 787 390 282 25 8 chr9 26545579 26545697 -97530475 + MIR SINE MIR 35 154 -108 4 787 227 157 20 0 chr9 26546050 26546101 -97530071 + CT-rich Low_complexity Low_complexity 1 52 0 4 787 398 266 96 13 chr9 26547685 26547841 -97528331 - L1MB2 LINE L1 0 6171 6003 4 787 392 268 145 23 chr9 26547865 26548037 -97528135 - L1MB2 LINE L1 -244 5939 5747 4 787 261 0 0 0 chr9 26551283 26551312 -97524860 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 4 787 182 288 109 67 chr9 26551492 26551611 -97524561 + MIRb SINE MIR 77 200 -68 4 787 484 279 184 56 chr9 26553074 26553340 -97522832 + MLT1F2 LTR MaLR 258 557 -3 4 787 233 258 14 108 chr9 26555283 26555296 -97520876 - ID SINE ID -140 84 74 4 787 252 0 0 0 chr9 26555296 26555324 -97520848 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 787 233 258 14 108 chr9 26555324 26555384 -97520788 - ID SINE ID -151 73 18 4 787 268 313 44 57 chr9 26557045 26557211 -97518961 + MIR SINE MIR 39 196 -66 5 787 279 216 29 67 chr9 26557484 26557588 -97518584 - MLT1A0 LTR MaLR -2 363 264 5 787 295 345 132 25 chr9 26558669 26558904 -97517268 - MIR SINE MIR -1 261 2 5 787 192 152 0 0 chr9 26559609 26559642 -97516530 + CT-rich Low_complexity Low_complexity 3 35 0 5 787 290 337 23 39 chr9 26559703 26559882 -97516290 - MER74A LTR ERVL -94 528 346 5 787 568 279 0 8 chr9 26559899 26560029 -97516143 - B1F1 SINE Alu -6 143 15 5 787 266 345 0 11 chr9 26560162 26560250 -97515922 - MER74A LTR ERVL -444 178 92 5 787 275 340 61 47 chr9 26561838 26562051 -97514121 - MIR SINE MIR -32 230 15 5 787 422 296 159 42 chr9 26564852 26565141 -97511031 - RMER12 LTR ERVK -369 953 631 5 787 1758 88 7 61 chr9 26565717 26565996 -97510176 - L1Md_F2 LINE L1 0 6582 6319 5 787 196 313 73 13 chr9 26566188 26566279 -97509893 - MIRc SINE MIR -87 175 82 6 787 219 36 0 0 chr9 26568520 26568548 -97507624 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 787 288 358 164 17 chr9 26569344 26569631 -97506541 - L2 LINE L2 -411 3008 2680 6 787 467 288 78 14 chr9 26570461 26570602 -97505570 + RSINE1 SINE B4 3 152 -13 6 787 414 300 0 9 chr9 26570696 26570807 -97505365 + PB1D10 SINE Alu 1 110 -7 6 787 261 0 0 0 chr9 26570818 26570847 -97505325 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 787 301 291 3 45 chr9 26576359 26576492 -97499680 - ID4 SINE ID -20 132 5 6 787 460 270 240 55 chr9 26577734 26578134 -97498038 + L1ME4a LINE L1 5327 5800 -324 6 787 360 59 0 0 chr9 26578177 26578228 -97497944 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 787 226 200 13 26 chr9 26578339 26578416 -97497756 + L1ME4a LINE L1 6044 6119 -5 6 787 21 0 0 0 chr9 26581715 26581736 -97494436 + AT_rich Low_complexity Low_complexity 1 21 0 6 787 228 312 84 23 chr9 26582306 26582437 -97493735 - MIRb SINE MIR -118 150 12 7 787 22 0 0 0 chr9 26583763 26583785 -97492387 + AT_rich Low_complexity Low_complexity 1 22 0 7 787 494 147 121 0 chr9 26584849 26584965 -97491207 - B1F1 SINE Alu -15 134 5 7 787 658 170 39 0 chr9 26585136 26585289 -97490883 + Lx4A LINE L1 6893 7051 -7 7 787 23 0 0 0 chr9 26585297 26585320 -97490852 + AT_rich Low_complexity Low_complexity 1 23 0 7 787 233 276 72 49 chr9 26586751 26586908 -97489264 - MIRc SINE MIR -28 240 72 7 787 251 196 86 86 chr9 26588570 26588687 -97487485 + L1M3d LINE L1 114 230 -6377 7 787 191 175 50 0 chr9 26588805 26588845 -97487327 + L3 LINE CR1 895 936 -3553 7 787 253 280 12 85 chr9 26589224 26589306 -97486866 + ID4 SINE ID 4 79 -4 7 787 304 281 34 77 chr9 26589424 26589632 -97486540 + L1M3d LINE L1 1876 2074 -4594 7 787 428 256 96 38 chr9 26589631 26589934 -97486238 + Lx9 LINE L1 7306 7638 -6 7 787 21 36 0 0 chr9 26589938 26589966 -97486206 + AT_rich Low_complexity Low_complexity 1 28 0 8 787 431 247 21 11 chr9 26589996 26590090 -97486082 + B1_Mus2 SINE Alu 3 97 -50 8 787 183 162 0 0 chr9 26590169 26590206 -97485966 + GA-rich Low_complexity Low_complexity 3 39 0 8 787 362 331 209 52 chr9 26590207 26590287 -97485885 + L1M4c LINE L1 1273 1357 -5027 8 787 396 0 0 0 chr9 26590287 26590331 -97485841 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 787 362 331 209 52 chr9 26590331 26590556 -97485616 + L1M4c LINE L1 1358 1625 -4759 8 787 180 0 0 0 chr9 26590560 26590580 -97485592 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 787 672 252 76 10 chr9 26590737 26591125 -97485047 + L1M4c LINE L1 2891 3324 -3058 8 787 632 322 141 49 chr9 26591139 26591687 -97484485 + Lx8 LINE L1 6874 7471 -2 8 787 1247 101 5 41 chr9 26591855 26592051 -97484121 + B2_Mm2 SINE B2 6 194 -1 8 787 198 0 0 0 chr9 26592177 26592199 -97483973 + (CAAAAA)n Simple_repeat Simple_repeat 1 22 0 8 787 627 305 32 0 chr9 26592205 26592392 -97483780 + Lx8 LINE L1 6848 7040 -433 8 787 313 297 30 119 chr9 26592379 26592513 -97483659 + Lx8 LINE L1 7197 7318 -155 8 787 372 184 0 0 chr9 26592551 26592654 -97483518 + (TA)n Simple_repeat Simple_repeat 1 103 0 9 787 261 227 11 22 chr9 26592684 26592774 -97483398 + Lx8 LINE L1 7383 7471 -2 8 787 514 206 235 0 chr9 26592795 26592965 -97483207 + L1M4c LINE L1 3572 3781 -2595 8 787 230 308 25 25 chr9 26592987 26593067 -97483105 - B1_Mur2 SINE Alu -5 144 65 9 787 310 376 10 10 chr9 26593031 26593133 -97483039 - ID_B1 SINE B4 -18 206 105 9 787 234 248 23 124 chr9 26593258 26593387 -97482785 + ID_B1 SINE B4 109 224 0 9 787 487 215 19 9 chr9 26593280 26593388 -97482784 + B1_Mur1 SINE Alu 40 148 -1 9 787 1731 264 154 18 chr9 26593413 26594305 -97481867 + L1M4c LINE L1 4002 5014 -1362 8 787 22 0 0 0 chr9 26594320 26594342 -97481830 + AT_rich Low_complexity Low_complexity 1 22 0 9 787 333 267 0 41 chr9 26594355 26594476 -97481696 - Lx7 LINE L1 -16 7680 7565 9 787 952 258 75 23 chr9 26594490 26594795 -97481377 - Lx7 LINE L1 -336 7360 7040 9 787 3766 195 111 48 chr9 26594837 26595142 -97481030 - L1_Mur3 LINE L1 -692 5188 4845 9 787 314 0 49 0 chr9 26595142 26595183 -97480989 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 9 787 3766 194 228 42 chr9 26595183 26595983 -97480189 - L1_Mur3 LINE L1 -1036 4844 3916 9 787 468 275 67 28 chr9 26596146 26596309 -97479863 + MLT1A0 LTR MaLR 7 171 -237 9 787 459 130 0 0 chr9 26596388 26596465 -97479707 + (ATTG)n Simple_repeat Simple_repeat 1 77 0 1 787 1039 119 11 0 chr9 26596467 26596643 -97479529 + (ACTG)n Simple_repeat Simple_repeat 1 178 0 1 787 405 167 0 0 chr9 26596644 26596722 -97479450 + (ATTG)n Simple_repeat Simple_repeat 2 79 0 1 787 761 339 43 34 chr9 26596874 26597198 -97478974 + Tigger7 DNA MER2_type 20 346 -2145 1 787 521 254 147 16 chr9 26597192 26597376 -97478796 + B3 SINE B2 9 216 0 1 787 397 183 69 19 chr9 26597357 26597493 -97478679 + Tigger7 DNA MER2_type 2234 2373 -118 1 787 2939 144 7 65 chr9 26597507 26598048 -97478124 - RLTR28 LTR ERVL -14 510 1 1 787 328 327 38 19 chr9 26598048 26598151 -97478021 + Tigger7 DNA MER2_type 2366 2470 -21 1 787 441 0 0 0 chr9 26598160 26598209 -97477963 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1 787 348 251 70 97 chr9 26598475 26598660 -97477512 + MER53 DNA hAT 7 186 -7 1 787 266 276 156 0 chr9 26599818 26599936 -97476236 + B1F SINE Alu 4 139 -10 1 787 227 227 81 138 chr9 26601095 26601182 -97474990 + Tigger6b DNA MER2_type 934 1015 -582 1 787 243 248 77 34 chr9 26602046 26602163 -97474009 + LTR65 LTR ERV1 272 393 -276 1 787 284 367 28 14 chr9 26602774 26602915 -97473257 + MARNA DNA Mariner 166 308 -278 1 787 337 286 106 48 chr9 26602977 26603169 -97473003 - B3A SINE B2 -2 214 23 1 787 273 330 55 0 chr9 26603384 26603493 -97472679 + PB1D10 SINE Alu 3 117 0 1 787 409 278 43 68 chr9 26603575 26603737 -97472435 + MLT1B LTR MaLR 188 345 -45 1 787 273 119 0 0 chr9 26603780 26603822 -97472350 + (TCTCCC)n Simple_repeat Simple_repeat 2 43 0 1 787 612 83 0 0 chr9 26605283 26605379 -97470793 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 787 462 36 0 0 chr9 26605962 26606018 -97470154 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 787 326 198 143 36 chr9 26606466 26606550 -97469622 + MER5A1 DNA MER1_type 40 132 -34 1 787 267 31 0 0 chr9 26606642 26606674 -97469498 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 787 449 222 45 13 chr9 26606689 26606844 -97469328 + L1M3 LINE L1 2801 2960 -3180 1 788 25 0 0 0 chr9 26607696 26607721 -97468451 + AT_rich Low_complexity Low_complexity 1 25 0 1 788 297 169 0 0 chr9 26607862 26607921 -97468251 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 788 239 228 112 12 chr9 26609830 26609910 -97466262 + L1MC LINE L1 5691 5778 -2104 1 788 1499 34 17 0 chr9 26610521 26610697 -97465475 + B2_Mm2 SINE B2 2 180 -15 1 788 230 0 33 0 chr9 26610697 26610727 -97465445 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 1 788 213 175 0 0 chr9 26611278 26611318 -97464854 + C-rich Low_complexity Low_complexity 5 44 0 1 788 27 0 0 0 chr9 26613007 26613034 -97463138 + AT_rich Low_complexity Low_complexity 1 27 0 1 788 3257 52 26 8 chr9 26614565 26614954 -97461218 + MTA_Mm LTR MaLR 1 396 0 1 788 467 263 164 0 chr9 26615200 26615352 -97460820 + B3A SINE B2 6 182 -16 1 788 978 210 148 46 chr9 26616188 26616564 -97459608 + Lx9 LINE L1 7228 7641 -3 1 788 317 328 97 93 chr9 26616585 26617082 -97459090 - L2a LINE L2 -9 3417 2919 1 788 180 280 82 51 chr9 26617125 26617223 -97458949 - L2a LINE L2 -604 2815 2715 1 788 412 327 90 46 chr9 26617627 26617973 -97458199 - L2a LINE L2 -711 2708 2348 1 788 851 253 152 49 chr9 26618090 26618680 -97457492 - RMER13A LTR ERVK -26 834 155 1 788 227 240 26 26 chr9 26618801 26618878 -97457294 - L2a LINE L2 -1279 2140 2064 1 788 288 0 0 0 chr9 26619074 26619106 -97457066 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1 788 1375 275 55 6 chr9 26619114 26619462 -97456710 + MTE2b LTR MaLR 3 367 -12 1 788 623 269 34 7 chr9 26620075 26620221 -97455951 + ORR1E LTR MaLR 1 150 -209 1 788 759 221 7 7 chr9 26620234 26620371 -97455801 - B1_Mur1 SINE Alu 0 149 13 1 788 514 281 13 58 chr9 26620371 26620389 -97455783 - ID_B1 SINE B4 0 224 77 1 788 425 264 48 16 chr9 26620373 26620508 -97455664 + ORR1E LTR MaLR 141 272 -98 1 788 4978 147 15 8 chr9 26620515 26621247 -97454925 - RMER19A LTR ERVK 0 737 1 1 788 383 250 97 80 chr9 26622212 26622325 -97453847 - PB1D10 SINE Alu -1 116 2 1 788 189 0 0 0 chr9 26622391 26622412 -97453760 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 788 258 229 33 0 chr9 26622885 26622946 -97453226 + L1MB7 LINE L1 5411 5473 -701 1 788 328 311 0 0 chr9 26622969 26623043 -97453129 + ID4 SINE ID 9 82 -1 1 788 261 284 134 25 chr9 26622978 26623097 -97453075 + B4 SINE B4 18 149 -143 1 788 332 260 26 0 chr9 26623184 26623261 -97452911 + ID SINE ID 5 83 -141 1 788 574 287 40 8 chr9 26623264 26623513 -97452659 + L1MB7 LINE L1 5599 5855 -329 1 788 213 256 0 0 chr9 26623517 26623560 -97452612 + RSINE1 SINE B4 4 46 -119 1 788 1030 222 67 28 chr9 26623561 26623645 -97452527 + ORR1E LTR MaLR 95 175 -184 1 788 540 0 0 0 chr9 26623645 26623705 -97452467 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 788 1030 222 67 28 chr9 26623705 26623875 -97452297 + ORR1E LTR MaLR 176 358 -1 1 788 372 265 68 10 chr9 26623875 26623971 -97452201 + RSINE1 SINE B4 54 155 -10 1 788 477 283 25 30 chr9 26623971 26624168 -97452004 + L1MB7 LINE L1 5875 6070 -114 1 788 1432 292 16 16 chr9 26624172 26624548 -97451624 + MTEa LTR MaLR 1 376 -3 1 788 22 35 0 0 chr9 26624552 26624581 -97451591 + AT_rich Low_complexity Low_complexity 1 29 0 1 788 436 343 39 22 chr9 26624692 26624871 -97451301 + B3A SINE B2 1 182 -16 1 788 396 0 0 0 chr9 26625400 26625444 -97450728 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 788 931 243 29 10 chr9 26626445 26626653 -97449519 - B3 SINE B2 0 216 5 1 788 777 196 144 5 chr9 26627172 26627387 -97448785 + Lx9 LINE L1 7395 7639 -5 1 788 602 113 10 0 chr9 26628287 26628384 -97447788 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 1 788 2492 142 23 16 chr9 26628390 26628775 -97447397 - Lx4A LINE L1 0 7058 6671 1 788 1189 204 167 12 chr9 26629043 26629366 -97446806 - ORR1C2 LTR MaLR -6 378 6 1 788 1087 114 6 0 chr9 26630312 26630470 -97445702 + ORR1C1 LTR MaLR 1 159 -219 1 788 736 232 170 0 chr9 26630481 26630517 -97445655 - ORR1C2 LTR MaLR -155 229 191 1 788 540 0 0 0 chr9 26630517 26630577 -97445595 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 788 736 232 170 0 chr9 26630577 26630734 -97445438 - ORR1C2 LTR MaLR -194 190 4 1 788 328 255 35 97 chr9 26630841 26630857 -97445315 + RLTR20A1 LTR ERVK 446 458 -93 1 788 1041 63 0 0 chr9 26630857 26630999 -97445173 + (TG)n Simple_repeat Simple_repeat 2 143 0 1 788 328 255 35 97 chr9 26630999 26631095 -97445077 + RLTR20A1 LTR ERVK 459 551 0 1 788 232 270 63 0 chr9 26631097 26631160 -97445012 + B1F SINE Alu 20 86 -63 1 788 461 121 12 0 chr9 26631599 26631682 -97444490 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 788 287 292 26 0 chr9 26631930 26632043 -97444129 - Lx7 LINE L1 -624 7072 6957 1 788 749 237 39 69 chr9 26632058 26632262 -97443910 + B3A SINE B2 1 198 0 1 788 450 0 0 0 chr9 26633473 26633523 -97442649 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 788 285 29 0 0 chr9 26633548 26633582 -97442590 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 788 22 0 0 0 chr9 26635428 26635450 -97440722 + AT_rich Low_complexity Low_complexity 1 22 0 1 788 246 160 0 0 chr9 26636853 26636903 -97439269 + T-rich Low_complexity Low_complexity 2 51 0 1 788 23 33 0 0 chr9 26636989 26637019 -97439153 + AT_rich Low_complexity Low_complexity 1 30 0 1 788 999 314 71 20 chr9 26637772 26638276 -97437896 - L1MA5 LINE L1 -35 6265 5736 1 788 414 0 0 0 chr9 26639650 26639696 -97436476 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 788 396 0 0 0 chr9 26639696 26639739 -97436433 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 788 266 300 106 13 chr9 26639751 26640048 -97436124 + L1MD LINE L1 2806 3129 -3017 1 788 252 346 146 0 chr9 26640428 26640558 -97435614 + MIR SINE MIR 107 255 -7 1 788 337 318 88 44 chr9 26640567 26640748 -97435424 + ORR1E LTR MaLR 8 196 -163 1 788 306 0 0 0 chr9 26642255 26642289 -97433883 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 788 979 257 79 55 chr9 26642505 26642871 -97433301 + Lx8 LINE L1 7097 7471 -2 1 788 3207 114 0 5 chr9 26642936 26643366 -97432806 + Lx2 LINE L1 6569 6996 -1 1 788 390 21 0 0 chr9 26643392 26643439 -97432733 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 788 732 232 113 0 chr9 26643896 26643954 -97432218 + B3 SINE B2 1 58 -158 1 788 180 0 0 0 chr9 26643954 26643974 -97432198 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 788 732 232 113 0 chr9 26643974 26644109 -97432063 + B3 SINE B2 59 215 -1 1 788 1258 48 0 7 chr9 26644419 26644567 -97431605 + B1_Mus2 SINE Alu 1 147 0 1 788 282 56 0 0 chr9 26644567 26644603 -97431569 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 1 788 2127 185 55 5 chr9 26644845 26645230 -97430942 + MTC LTR MaLR 1 404 -17 1 788 31773 112 12 23 chr9 26645320 26651667 -97424505 + L1_Mus1 LINE L1 261 6567 0 1 788 3702 20 2 2 chr9 26652303 26652699 -97423473 + MTA_Mm LTR MaLR 1 396 0 1 788 24 0 0 0 chr9 26652934 26652958 -97423214 + AT_rich Low_complexity Low_complexity 1 24 0 1 788 396 125 0 0 chr9 26654129 26654193 -97421979 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 788 625 136 0 88 chr9 26654203 26654396 -97421776 + G-rich Low_complexity Low_complexity 5 180 0 1 788 296 119 68 45 chr9 26654393 26654481 -97421691 + GA-rich Low_complexity Low_complexity 1 90 0 1 788 2316 53 14 0 chr9 26654824 26655107 -97421065 + L1Md_F3 LINE L1 6298 6584 0 1 788 7869 77 13 4 chr9 26655564 26656761 -97419411 + L1_Mus3 LINE L1 5430 6636 -2 1 788 685 250 21 0 chr9 26656840 26656980 -97419192 + B3A SINE B2 1 143 -55 1 788 386 309 71 35 chr9 26656982 26657123 -97419049 - B1_Mur3 SINE Alu -3 146 1 1 788 264 222 18 18 chr9 26657074 26657129 -97419043 - B4 SINE B4 -158 134 80 1 788 244 221 75 75 chr9 26657202 26657295 -97418877 + RMER15 LTR ERVL 64 156 -419 1 788 239 231 0 37 chr9 26657366 26657420 -97418752 + RMER15 LTR ERVL 370 421 -154 1 788 393 22 0 0 chr9 26658934 26658980 -97417192 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 788 1813 21 0 0 chr9 26659638 26659830 -97416342 - B2_Mm1a SINE B2 0 193 2 1 788 243 0 0 0 chr9 26659893 26659920 -97416252 + (T)n Simple_repeat Simple_repeat 1 27 0 2 788 2271 171 72 39 chr9 26661459 26661947 -97414225 + RLTR12B LTR ERVK 1 504 -24 2 788 219 114 0 0 chr9 26662893 26662928 -97413244 + (T)n Simple_repeat Simple_repeat 1 35 0 2 788 1300 35 0 0 chr9 26662930 26663075 -97413097 - B1_Mm SINE Alu -2 145 1 2 788 313 304 13 74 chr9 26663379 26663528 -97412644 + B4A SINE B4 6 145 -147 2 788 303 292 69 55 chr9 26663586 26663731 -97412441 + L1M5 LINE L1 2796 2942 -3204 2 788 273 288 96 0 chr9 26664513 26664586 -97411586 + ID4_ SINE ID 1 80 -3 2 788 234 277 23 0 chr9 26665153 26665283 -97410889 + GA-rich Low_complexity Low_complexity 2 134 0 2 788 933 289 43 0 chr9 26665297 26665553 -97410619 + Lx8 LINE L1 6514 6780 -693 2 788 1132 242 94 25 chr9 26665583 26665901 -97410271 - Lx6 LINE L1 0 7460 7121 2 788 1466 314 96 14 chr9 26665917 26666551 -97409621 + Lx8 LINE L1 6788 7473 0 2 788 395 202 11 0 chr9 26666645 26666739 -97409433 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 788 512 167 143 0 chr9 26668603 26668729 -97407443 + L1_Mur3 LINE L1 4219 4362 -1518 2 788 307 333 74 25 chr9 26668763 26668966 -97407206 - L1MDa LINE L1 -5035 1598 1386 2 788 279 0 0 0 chr9 26669106 26669137 -97407035 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 788 2068 177 41 24 chr9 26670256 26670667 -97405505 - RMER1B Other Other 0 1066 649 2 788 1150 183 29 16 chr9 26670669 26670914 -97405258 - RLTR22_Mur LTR ERVK 0 1848 1601 2 788 4456 145 60 36 chr9 26671120 26671814 -97404358 - RLTR22_Mur LTR ERVK -872 976 279 2 788 1134 95 0 0 chr9 26671814 26671961 -97404211 + B1_Mus1 SINE Alu 1 147 -1 2 788 4456 145 60 36 chr9 26671961 26672219 -97403953 - RLTR22_Mur LTR ERVK -1570 278 1 2 788 597 248 0 3 chr9 26672219 26672395 -97403777 - RMER1B Other Other -414 652 537 2 788 16970 162 44 29 chr9 26672759 26676433 -97399739 + ETnERV2-int LTR ERVK 1913 6429 -977 2 788 388 126 0 49 chr9 26676529 26676610 -97399562 + RLTR45-int LTR ERVK 6009 6072 -1172 2 788 1514 149 12 8 chr9 26676610 26676861 -97399311 + ETnERV3-int LTR ERVK 5529 5780 -28 2 788 2193 179 97 6 chr9 26676870 26677364 -97398808 + RLTR13D6 LTR ERVK 1 539 -363 2 788 541 66 0 38 chr9 26677364 26677443 -97398729 + ETnERV2-int LTR ERVK 7331 7406 0 2 788 2559 87 78 10 chr9 26677443 26677826 -97398346 + RLTR9E LTR ERVK 1 409 0 2 788 242 128 0 41 chr9 26678059 26678108 -97398064 + A-rich Low_complexity Low_complexity 2 48 0 2 788 706 166 11 0 chr9 26678325 26678500 -97397672 + CT-rich Low_complexity Low_complexity 2 178 0 2 788 539 313 5 19 chr9 26678820 26678845 -97397327 - Lx4B LINE L1 -392 6666 6645 2 788 1515 95 4 18 chr9 26678845 26679070 -97397102 - Lx2 LINE L1 -1 6996 6775 2 788 1367 119 0 0 chr9 26679070 26679264 -97396908 - Lx2 LINE L1 -354 6643 6450 2 788 9423 133 31 6 chr9 26679259 26681553 -97394619 - Lx2B LINE L1 -22 6978 4623 2 788 16046 127 28 9 chr9 26681536 26685020 -97391152 - Lx2B LINE L1 0 6638 3112 2 788 270 247 26 13 chr9 26685149 26685227 -97390945 + RMER10A LTR ERVL 29 107 -335 2 788 571 120 9 9 chr9 26685369 26685478 -97390694 + (TC)n Simple_repeat Simple_repeat 2 110 0 2 788 402 79 0 0 chr9 26685531 26685594 -97390578 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 788 629 246 58 108 chr9 26685861 26686119 -97390053 - MTEb LTR MaLR -2 377 133 2 788 894 246 5 40 chr9 26686119 26686343 -97389829 + MTE2a LTR MaLR 1 216 -163 2 788 204 67 0 0 chr9 26686386 26686416 -97389756 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 788 723 220 0 8 chr9 26686420 26686553 -97389619 - B1_Mur1 SINE Alu -8 141 10 2 788 693 194 116 0 chr9 26686569 26686724 -97389448 + MTE2a LTR MaLR 207 379 0 2 788 953 128 43 0 chr9 26688182 26688323 -97387849 + B1_Mus1 SINE Alu 2 148 0 2 788 673 219 0 22 chr9 26691446 26691628 -97384544 + GA-rich Low_complexity Low_complexity 3 180 0 2 788 1210 61 0 0 chr9 26691655 26691802 -97384370 + B1_Mus2 SINE Alu 1 147 0 2 788 1132 224 203 6 chr9 26692279 26692624 -97383548 + MTD LTR MaLR 3 415 -4 2 788 359 332 107 67 chr9 26692766 26693066 -97383106 + RLTR17 LTR ERVK 115 426 -266 2 788 958 138 21 0 chr9 26693430 26693575 -97382597 - B1_Mus1 SINE Alu 0 148 1 2 788 5771 9 0 0 chr9 26693723 26694355 -97381817 + L1Md_T LINE L1 5951 6582 0 2 788 26 30 0 0 chr9 26694519 26694552 -97381620 + AT_rich Low_complexity Low_complexity 1 33 0 2 788 222 37 0 0 chr9 26694554 26694581 -97381591 + (A)n Simple_repeat Simple_repeat 1 27 0 2 788 242 315 42 32 chr9 26695201 26695296 -97380876 + ID_B1 SINE B4 78 173 -51 2 788 403 209 7 33 chr9 26695214 26695323 -97380849 + PB1D9 SINE Alu 10 119 -1 2 788 2278 264 92 22 chr9 26695472 26696153 -97380019 + Lx8 LINE L1 6482 7210 -263 2 788 183 80 0 0 chr9 26696183 26696208 -97379964 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 788 441 0 0 0 chr9 26696227 26696276 -97379896 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 788 901 295 41 7 chr9 26696289 26696559 -97379613 - B4A SINE B4 -8 284 6 2 788 278 356 85 65 chr9 26697533 26697734 -97378438 + B4A SINE B4 84 288 -4 2 788 238 308 32 49 chr9 26697714 26697837 -97378335 - RMER12 LTR ERVK -464 858 738 2 788 180 0 0 0 chr9 26698070 26698090 -97378082 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 788 720 204 180 11 chr9 26698356 26698534 -97377638 - B3 SINE B2 0 216 9 2 788 415 259 28 9 chr9 26698765 26698874 -97377298 + PB1D10 SINE Alu 6 116 -1 2 788 414 0 0 0 chr9 26699001 26699047 -97377125 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 788 360 0 0 0 chr9 26699047 26699086 -97377086 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 788 2456 196 162 15 chr9 26699701 26700326 -97375846 + RMER1B Other Other 215 1057 -9 2 788 352 239 281 30 chr9 26700385 26700549 -97375623 + B3 SINE B2 2 206 -10 2 788 249 108 0 0 chr9 26700575 26700612 -97375560 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 2 788 1209 106 0 0 chr9 26700632 26700812 -97375360 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 788 468 0 0 0 chr9 26700830 26700882 -97375290 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 2 788 390 252 22 77 chr9 26702229 26702507 -97373665 + L1M4 LINE L1 5132 5378 -768 2 788 263 246 177 21 chr9 26702531 26702672 -97373500 + L1M4 LINE L1 5364 5526 -663 2 788 1524 42 5 0 chr9 26702801 26702990 -97373182 - L1_Mus1 LINE L1 0 6567 6378 2 788 225 0 0 0 chr9 26704581 26704606 -97371566 + (A)n Simple_repeat Simple_repeat 1 25 0 2 788 1249 94 0 62 chr9 26704695 26704887 -97371285 + B2_Mm2 SINE B2 1 180 -15 2 788 350 95 384 0 chr9 26704908 26705012 -97371160 + B2_Mm2 SINE B2 47 190 -5 2 788 516 299 22 82 chr9 26705007 26705189 -97370983 + B3A SINE B2 27 197 -1 2 788 441 146 0 0 chr9 26706695 26706777 -97369395 - L1Md_F2 LINE L1 0 6582 6501 2 788 2002 153 56 26 chr9 26706866 26707256 -97368916 + MTB_Mm LTR MaLR 6 407 0 2 788 848 136 0 22 chr9 26707564 26707699 -97368473 + B1_Mur4 SINE Alu 1 132 -18 2 788 569 14 0 14 chr9 26708305 26708376 -97367796 + (TTTTC)n Simple_repeat Simple_repeat 3 72 0 2 788 1172 83 70 12 chr9 26708376 26708547 -97367625 - B2_Mm2 SINE B2 -14 181 1 2 788 507 295 39 26 chr9 26708629 26708782 -97367390 + RSINE1 SINE B4 11 165 0 2 788 494 301 68 0 chr9 26708834 26708980 -97367192 + ID_B1 SINE B4 6 161 -63 2 788 1275 267 48 45 chr9 26709128 26709504 -97366668 + MTE2b LTR MaLR 1 377 -2 2 788 386 276 0 39 chr9 26709510 26709612 -97366560 - ID_B1 SINE B4 -6 218 121 2 788 765 137 0 0 chr9 26710155 26710272 -97365900 + B3 SINE B2 6 122 -94 2 788 33390 72 2 2 chr9 26710272 26715258 -97360914 + L1Md_F2 LINE L1 604 5586 -297 2 788 8152 43 11 1 chr9 26715258 26716244 -97359928 + L1Md_F2 LINE L1 5587 6582 0 2 788 8550 65 13 0 chr9 26716244 26717375 -97358797 + L1_Mm LINE L1 2459 3604 -2279 2 788 5883 35 0 0 chr9 26717379 26718060 -97358112 + L1Md_T LINE L1 5902 6582 0 2 788 327 276 58 0 chr9 26718569 26718656 -97357516 - ID_B1 SINE B4 -130 94 3 2 788 711 243 20 0 chr9 26719031 26719179 -97356993 + B3 SINE B2 1 151 -65 2 788 288 0 0 0 chr9 26719180 26719212 -97356960 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 788 423 0 0 0 chr9 26719308 26719355 -97356817 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2 788 260 329 1 0 chr9 26720443 26720518 -97355654 - B1F SINE Alu -31 118 43 2 788 582 256 0 21 chr9 26721326 26721466 -97354706 + B1_Mur1 SINE Alu 5 141 -8 2 788 215 246 14 14 chr9 26721733 26721803 -97354369 + A-rich Low_complexity Low_complexity 2 71 0 2 788 392 255 31 0 chr9 26722082 26722180 -97353992 + PB1D10 SINE Alu 17 117 0 2 788 251 333 36 0 chr9 26722201 26722312 -97353860 + PB1D10 SINE Alu 1 115 -2 2 788 318 273 118 47 chr9 26722319 26722446 -97353726 + B1_Mur2 SINE Alu 5 140 -9 2 788 6153 35 3 0 chr9 26722558 26723243 -97352929 + L1Md_F3 LINE L1 5898 6584 0 2 788 937 123 51 0 chr9 26723333 26723471 -97352701 + B1_Mur3 SINE Alu 5 149 0 2 788 725 319 57 0 chr9 26723482 26723796 -97352376 + L1MB3 LINE L1 5783 6114 -69 2 788 552 235 17 34 chr9 26724051 26724066 -97352106 - PB1D10 SINE Alu 0 117 103 2 788 594 0 0 0 chr9 26724066 26724132 -97352040 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 2 788 552 235 17 34 chr9 26724132 26724235 -97351937 - PB1D10 SINE Alu -15 102 1 2 788 389 301 69 16 chr9 26724238 26724464 -97351708 + MLT2B1 LTR ERVL 305 554 0 2 788 347 284 116 53 chr9 26724590 26724811 -97351361 + L1MCa LINE L1 576 766 -5985 2 788 1568 148 17 38 chr9 26724811 26725099 -97351073 + RLTR14 LTR ERV1 1 282 -100 2 788 1425 173 30 16 chr9 26725101 26725398 -97350774 + Lx LINE L1 6315 6654 0 2 788 642 222 15 15 chr9 26725435 26725572 -97350600 + RLTR14 LTR ERV1 246 382 0 2 788 6097 72 19 0 chr9 26725598 26726348 -97349824 - L1_Mus2 LINE L1 0 6566 5803 2 788 6557 73 1 0 chr9 26726348 26727186 -97348986 + L1_Mus2 LINE L1 4975 5813 -70 2 788 464 289 70 0 chr9 26727352 26727480 -97348692 - ID_B1 SINE B4 -3 221 85 2 788 2052 200 77 106 chr9 26727481 26728028 -97348144 + MT2A LTR ERVL 1 531 -2 2 788 21 0 0 0 chr9 26728050 26728071 -97348101 + AT_rich Low_complexity Low_complexity 1 21 0 2 788 263 214 14 0 chr9 26728463 26728533 -97347639 + A-rich Low_complexity Low_complexity 4 74 0 3 788 389 293 124 71 chr9 26728537 26728797 -97347375 + RSINE1 SINE B4 5 292 0 3 788 24 53 0 0 chr9 26729636 26729674 -97346498 + AT_rich Low_complexity Low_complexity 1 38 0 3 788 231 114 0 0 chr9 26729927 26729962 -97346210 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 788 556 150 180 16 chr9 26731236 26731358 -97344814 - B1_Mur4 SINE Alu -8 142 1 3 788 449 231 42 8 chr9 26732055 26732173 -97343999 + B1F SINE Alu 18 139 -10 3 788 538 228 29 29 chr9 26732217 26732357 -97343815 + Lx5 LINE L1 6911 7050 0 3 788 291 328 93 86 chr9 26733050 26733340 -97342832 - L2a LINE L2 -20 3406 3115 3 788 231 308 303 29 chr9 26733366 26733831 -97342341 - L2a LINE L2 -356 3063 2460 3 788 426 39 0 0 chr9 26733831 26733883 -97342289 + (TCTTG)n Simple_repeat Simple_repeat 2 53 0 3 788 231 308 303 29 chr9 26733883 26734073 -97342099 - L2a LINE L2 -960 2459 2230 3 788 249 33 0 0 chr9 26734177 26734207 -97341965 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 3 788 212 323 21 10 chr9 26734209 26734306 -97341866 - L2a LINE L2 -1223 2196 2099 3 788 209 257 185 28 chr9 26734433 26734541 -97341631 - L2a LINE L2 -1376 2043 1919 3 788 22 0 0 0 chr9 26734545 26734567 -97341605 + GC_rich Low_complexity Low_complexity 1 22 0 3 788 247 323 158 72 chr9 26735381 26735749 -97340423 - LTR84b LTR ERVL -90 671 268 3 788 405 0 0 0 chr9 26735749 26735794 -97340378 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 788 432 37 0 0 chr9 26735794 26735847 -97340325 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 788 247 323 158 72 chr9 26735847 26735907 -97340265 - LTR84b LTR ERVL -494 267 206 3 788 498 231 106 16 chr9 26736098 26736221 -97339951 - ID_B1 SINE B4 0 224 91 3 788 429 208 13 0 chr9 26736737 26736814 -97339358 + ID4 SINE ID 4 81 -2 3 788 1119 210 10 5 chr9 26737415 26737621 -97338551 + B3 SINE B2 5 211 -5 3 788 805 229 0 0 chr9 26737651 26737791 -97338381 + B1_Mur2 SINE Alu 2 141 -8 3 788 36 0 0 0 chr9 26737810 26737846 -97338326 + AT_rich Low_complexity Low_complexity 1 36 0 3 788 4141 131 28 0 chr9 26737846 26738495 -97337677 + L1VL2 LINE L1 63 729 -5606 3 98 10908 81 14 4 chr9 26738471 26740003 -97336169 + MusHAL1 LINE L1 538 2085 -627 3 789 38 22 0 0 chr9 26740180 26740225 -97335947 + AT_rich Low_complexity Low_complexity 1 45 0 3 789 416 19 19 0 chr9 26740669 26740722 -97335450 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 789 563 248 77 51 chr9 26740929 26741163 -97335009 - L1MD1 LINE L1 -80 6162 5923 3 789 427 269 37 0 chr9 26741222 26741330 -97334842 + PB1D10 SINE Alu 2 113 -4 3 789 252 0 0 0 chr9 26741335 26741363 -97334809 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 789 4154 207 69 93 chr9 26741771 26743190 -97332982 - RMER1A Other Other -83 947 1 3 789 207 188 0 40 chr9 26744411 26744461 -97331711 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 3 789 548 175 29 10 chr9 26744600 26744704 -97331468 + PB1D9 SINE Alu 7 112 -8 3 789 243 0 0 0 chr9 26744713 26744740 -97331432 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 789 974 155 7 7 chr9 26744858 26745001 -97331171 - B1_Mur3 SINE Alu -6 143 1 3 789 332 273 116 43 chr9 26745376 26745514 -97330658 + B1F SINE Alu 2 149 0 3 789 545 227 0 9 chr9 26745532 26745643 -97330529 + B3 SINE B2 4 113 -103 3 789 629 158 117 0 chr9 26745644 26745764 -97330408 + ORR1C1 LTR MaLR 245 378 0 3 789 234 213 0 0 chr9 26745974 26746021 -97330151 - L1_Mm LINE L1 -2238 3645 3599 3 789 1765 265 36 7 chr9 26745987 26746479 -97329693 + Lx7 LINE L1 6572 7085 -611 3 789 607 201 7 7 chr9 26746510 26746660 -97329512 + GA-rich Low_complexity Low_complexity 1 150 0 3 789 319 194 361 8 chr9 26746668 26746798 -97329374 + Lx7 LINE L1 7153 7328 -368 3 789 1033 106 0 7 chr9 26747065 26747217 -97328955 - L1_Mus4 LINE L1 -5 6631 6481 3 789 335 278 9 44 chr9 26747343 26747371 -97328801 - PB1D10 SINE Alu 0 117 9 3 789 336 262 0 59 chr9 26747371 26747456 -97328716 - ID_B1 SINE B4 -55 169 90 3 789 531 82 0 23 chr9 26747759 26747846 -97328326 + L1Md_F3 LINE L1 6500 6584 0 3 789 21 57 0 0 chr9 26747927 26747962 -97328210 + AT_rich Low_complexity Low_complexity 1 35 0 3 789 864 281 81 56 chr9 26748010 26748483 -97327689 - RMER15 LTR ERVL 0 575 4 3 789 1192 63 7 0 chr9 26748626 26748769 -97327403 + B1_Mus1 SINE Alu 5 148 0 3 789 553 258 115 21 chr9 26748849 26749083 -97327089 + L1M4 LINE L1 5538 5793 -391 3 789 3621 109 25 21 chr9 26749083 26749645 -97326527 + MurERV4_19-int LTR ERVK 4193 4756 -1024 3 789 601 296 42 8 chr9 26749646 26749908 -97326264 + L1VL4 LINE L1 194 464 -5838 3 789 2800 226 81 29 chr9 26749908 26750744 -97325428 - RMER17C-int LTR ERVK -1093 2145 1453 3 789 359 183 79 58 chr9 26750824 26750963 -97325209 - RMER17C-int LTR ERVK -3486 2036 1895 3 789 311 152 60 15 chr9 26750984 26751051 -97325121 - RMER17C-int LTR ERVK -1809 1429 1360 3 789 8199 74 21 11 chr9 26751253 26752266 -97323906 + RLTR13D5 LTR ERVK 1 1023 0 3 789 3502 170 58 48 chr9 26752283 26752724 -97323448 + ETnERV2-int LTR ERVK 2 462 -6944 3 789 1262 68 0 0 chr9 26752724 26752870 -97323302 + B1_Mm SINE Alu 1 146 -1 3 789 3502 186 32 47 chr9 26752870 26753422 -97322750 + ETnERV2-int LTR ERVK 463 1080 -6326 3 789 425 20 0 0 chr9 26753422 26753471 -97322701 + (GGAAA)n Simple_repeat Simple_repeat 1 49 0 3 789 637 139 54 12 chr9 26753471 26753638 -97322534 + GA-rich Low_complexity Low_complexity 6 179 0 3 789 524 229 29 0 chr9 26753668 26753838 -97322334 + GA-rich Low_complexity Low_complexity 2 176 0 3 789 8244 125 63 40 chr9 26753849 26754948 -97321224 + ETnERV2-int LTR ERVK 1054 2177 -5229 3 789 1134 36 7 21 chr9 26754948 26755090 -97321082 + B1_Mus1 SINE Alu 1 140 -8 3 789 795 59 25 0 chr9 26755090 26755208 -97320964 + (GAA)n Simple_repeat Simple_repeat 2 122 0 3 789 8244 125 63 40 chr9 26755208 26755544 -97320628 + ETnERV2-int LTR ERVK 2178 2521 -4885 3 789 457 295 73 15 chr9 26755544 26755720 -97320452 - RMER16 LTR ERVK -306 227 1 3 789 1153 215 92 4 chr9 26755739 26755909 -97320263 + ETnERV2-int LTR ERVK 3745 3915 -3491 3 789 477 34 0 0 chr9 26755909 26755968 -97320204 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 789 1153 215 92 4 chr9 26755968 26756068 -97320104 + ETnERV2-int LTR ERVK 3916 4038 -3368 3 789 577 245 210 45 chr9 26756246 26756596 -97319576 + RLTR28B LTR ERVL 1 457 -24 3 789 1008 311 62 22 chr9 26756710 26757111 -97319061 + Lx9 LINE L1 6386 6802 -842 3 789 232 317 94 58 chr9 26757093 26757139 -97319033 - Lx8 LINE L1 -451 7022 6981 3 789 2414 89 45 3 chr9 26757139 26757453 -97318719 + ORR1A2 LTR MaLR 1 327 0 3 789 232 317 94 58 chr9 26757453 26757577 -97318595 - Lx8 LINE L1 -493 6980 6846 3 789 438 239 0 0 chr9 26757665 26757757 -97318415 + ORR1D1 LTR MaLR 1 92 -282 3 789 210 108 54 0 chr9 26757757 26757794 -97318378 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 3 789 688 271 0 0 chr9 26757794 26757960 -97318212 + Lx9 LINE L1 6739 6904 -740 3 789 4199 139 15 15 chr9 26757963 26758633 -97317539 - IAPEY3-int LTR ERVK -16 7664 6995 3 789 1537 112 99 0 chr9 26758637 26758869 -97317303 - IAP-d-int LTR ERVK -1287 5255 5001 3 789 530 308 27 27 chr9 26758869 26759264 -97316908 - IAP-d-int LTR ERVK -6015 1566 822 3 789 2873 60 109 3 chr9 26759289 26759675 -97316497 - RLTR10-int LTR ERVK -995 992 566 3 789 509 78 50 34 chr9 26759675 26759794 -97316378 + CT-rich Low_complexity Low_complexity 3 123 0 3 789 381 23 0 0 chr9 26759881 26759924 -97316248 - RLTR10-int LTR ERVK -7314 267 225 3 789 252 283 0 0 chr9 26759924 26759977 -97316195 - RLTR27 LTR ERVK -34 275 223 3 789 1301 58 6 12 chr9 26759977 26760150 -97316022 - RLTR10-int LTR ERVK -7409 172 1 3 789 3129 38 0 88 chr9 26760150 26760550 -97315622 - RLTR10B2 LTR ERVK 0 365 1 3 789 960 227 63 47 chr9 26760555 26760809 -97315363 + Lx9 LINE L1 6898 7155 -489 3 789 769 211 13 7 chr9 26760864 26761017 -97315155 - MYSERV16_I-int LTR ERVK -525 1801 1648 3 789 22040 148 36 30 chr9 26761024 26765818 -97310354 + L1_Mm LINE L1 1206 5683 -200 3 789 1517 79 23 5 chr9 26765834 26766051 -97310121 + L1_Mus3 LINE L1 6418 6638 0 3 789 216 0 0 0 chr9 26767681 26767705 -97308467 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 3 789 207 0 0 0 chr9 26768641 26768664 -97307508 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 789 606 136 117 0 chr9 26770289 26770392 -97305780 - ORR1A2 LTR MaLR -92 235 121 3 789 2323 77 0 19 chr9 26770405 26770724 -97305448 + MurERV4_19-int LTR ERVK 4744 5056 -724 3 789 555 272 134 48 chr9 26770724 26770804 -97305368 - L1MA4A LINE L1 -571 6902 6822 3 789 1132 68 0 0 chr9 26770804 26770937 -97305235 + B1_Mus1 SINE Alu 5 137 -11 3 789 396 0 0 0 chr9 26770937 26770981 -97305191 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 789 555 272 134 48 chr9 26770981 26771189 -97304983 - L1MA4A LINE L1 -652 6821 6589 3 789 669 270 45 85 chr9 26771335 26771371 -97304801 + B3 SINE B2 3 34 -182 3 789 180 0 0 0 chr9 26771371 26771391 -97304781 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 789 270 0 0 0 chr9 26771397 26771427 -97304745 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 789 669 270 45 85 chr9 26771427 26771606 -97304566 + B3 SINE B2 35 216 0 3 789 279 71 0 0 chr9 26771796 26771838 -97304334 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 789 674 267 113 72 chr9 26771895 26772066 -97304106 - L1MA4A LINE L1 -1542 5931 5756 3 789 294 29 0 0 chr9 26772066 26772101 -97304071 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 789 674 263 106 79 chr9 26772101 26772413 -97303759 - L1MA4A LINE L1 -514 5789 5474 3 789 289 250 50 8 chr9 26772442 26772457 -97303715 - L1_Mur3 LINE L1 -861 5498 5484 3 789 659 281 46 0 chr9 26772457 26772610 -97303562 - RSINE1 SINE B4 -4 161 2 3 789 327 244 80 1 chr9 26772610 26772731 -97303441 - L1_Mur3 LINE L1 -876 5483 5337 3 789 1722 36 0 5 chr9 26772810 26773004 -97303168 - B2_Mm1a SINE B2 0 193 1 3 789 273 152 0 0 chr9 26773165 26773211 -97302961 + L1MCa LINE L1 1839 1884 -4624 3 789 1826 193 82 6 chr9 26773309 26773673 -97302499 - MTD LTR MaLR -14 405 14 3 789 185 0 40 0 chr9 26773689 26773714 -97302458 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 789 3200 68 20 25 chr9 26773720 26774127 -97302045 - MTB_Mm LTR MaLR 0 407 3 3 789 5601 124 108 30 chr9 26774129 26775179 -97300993 - MTB_Mm-int LTR MaLR 0 1258 127 3 789 266 266 16 0 chr9 26775373 26775437 -97300735 - ERVL-B4-int LTR ERVL -1577 4137 4073 3 789 1780 72 0 9 chr9 26775484 26775708 -97300464 - L1_Mus1 LINE L1 0 6567 6346 3 789 692 104 0 28 chr9 26775708 26775817 -97300355 - MT-int LTR MaLR -992 106 1 3 789 4261 68 104 0 chr9 26775853 26776382 -97299790 - MT2B2 LTR ERVL 0 584 1 3 789 420 199 53 66 chr9 26776424 26776575 -97299597 - Lx9 LINE L1 -8 7636 7488 3 789 298 240 38 19 chr9 26776590 26776698 -97299474 - L1_Mur3 LINE L1 -681 5199 5091 3 789 1003 246 94 18 chr9 26776731 26777169 -97299003 - L1M2 LINE L1 -2494 3649 3179 3 789 545 267 17 0 chr9 26777224 26777344 -97298828 - RSINE1 SINE B4 -41 124 3 3 789 1080 279 90 56 chr9 26777344 26777681 -97298491 - L1_Mur3 LINE L1 -2723 3157 2811 3 789 1246 119 32 0 chr9 26777681 26777866 -97298306 - B2_Mm2 SINE B2 -3 192 2 3 789 1028 279 90 56 chr9 26777866 26778174 -97297998 - L1_Mur3 LINE L1 -3070 2810 2490 3 789 420 77 0 0 chr9 26778176 26778241 -97297931 + (TAG)n Simple_repeat Simple_repeat 3 67 0 3 789 971 19 0 0 chr9 26778319 26778426 -97297746 + L1Md_T LINE L1 5480 5586 -297 4 789 9194 4 0 0 chr9 26778426 26779422 -97296750 + L1Md_T LINE L1 5587 6582 0 4 789 517 271 14 0 chr9 26779422 26779454 -97296718 + L1_Mur1 LINE L1 5616 5649 -651 4 789 409 208 160 53 chr9 26779577 26779710 -97296462 + ORR1D2 LTR MaLR 27 181 -178 4 789 21 36 0 0 chr9 26779801 26779829 -97296343 + AT_rich Low_complexity Low_complexity 1 28 0 4 789 422 245 169 6 chr9 26779846 26780006 -97296166 + ORR1D2 LTR MaLR 185 370 0 4 789 743 301 96 17 chr9 26780010 26780575 -97295597 - L1_Mur3 LINE L1 -3577 2303 1673 3 789 646 132 116 14 chr9 26780585 26780665 -97295507 - RLTR20A2 LTR ERVK 0 578 483 4 789 423 0 0 0 chr9 26780665 26780712 -97295460 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 789 646 132 116 14 chr9 26780712 26780777 -97295395 - RLTR20A2 LTR ERVK -96 482 419 4 789 664 169 7 81 chr9 26780773 26780921 -97295251 - RLTR20A2 LTR ERVK -441 137 1 4 789 611 255 32 11 chr9 26780930 26781120 -97295052 - L1_Mur3 LINE L1 -4231 1649 1456 3 789 763 162 199 38 chr9 26781536 26781722 -97294450 + B3 SINE B2 1 216 0 4 789 226 274 133 52 chr9 26782250 26782385 -97293787 - MLT1C LTR MaLR 0 467 322 4 789 258 194 0 75 chr9 26782390 26782457 -97293715 + RLTR23 LTR ERV1 1 62 -368 4 789 696 169 40 8 chr9 26783467 26783592 -97292580 - ID_B1 SINE B4 -10 214 86 4 789 670 248 25 6 chr9 26783642 26783800 -97292372 - RSINE1 SINE B4 -2 163 3 4 789 304 233 55 0 chr9 26784384 26784457 -97291715 + MER5A DNA MER1_type 104 180 -9 4 789 229 289 193 52 chr9 26786139 26786274 -97289898 + RSINE1 SINE B4 3 156 -9 4 789 346 184 160 28 chr9 26787090 26787196 -97288976 - PB1D7 SINE Alu 0 120 1 4 789 345 312 166 18 chr9 26787488 26787651 -97288521 + MER63A DNA AcHobo 24 210 0 4 789 241 265 29 14 chr9 26787728 26787797 -97288375 + MIR3 SINE MIR 90 159 -49 4 789 377 323 8 0 chr9 26788019 26788149 -97288023 + ID_B1 SINE B4 94 224 0 4 789 13813 78 11 2 chr9 26788330 26790891 -97285281 + L1_Mus1 LINE L1 4011 6999 -1 4 789 835 173 0 0 chr9 26790908 26791047 -97285125 + B1_Mus1 SINE Alu 5 143 -5 4 789 497 305 27 101 chr9 26791130 26791349 -97284823 + B4A SINE B4 13 215 -77 4 789 441 0 0 0 chr9 26791349 26791398 -97284774 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 789 668 185 61 21 chr9 26791402 26791682 -97284490 + ORR1D1 LTR MaLR 9 374 0 4 789 216 0 0 0 chr9 26792067 26792091 -97284081 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 789 252 291 101 0 chr9 26792157 26792236 -97283936 - PB1D10 SINE Alu -30 87 1 4 789 259 268 146 0 chr9 26792615 26792697 -97283475 + B1_Mur2 SINE Alu 56 149 0 4 789 195 42 0 0 chr9 26793642 26793666 -97282506 + (ATAAG)n Simple_repeat Simple_repeat 5 28 0 4 789 2008 153 61 18 chr9 26793683 26793826 -97282346 + L1_Mur3 LINE L1 2856 3004 -2876 4 789 920 190 26 21 chr9 26793826 26794019 -97282153 + B2_Mm2 SINE B2 1 194 -1 4 789 2008 153 61 18 chr9 26794019 26794333 -97281839 + L1_Mur3 LINE L1 3005 3333 -2547 4 789 854 94 133 0 chr9 26794336 26794464 -97281708 + B1_Mus1 SINE Alu 4 148 0 4 789 716 143 8 0 chr9 26794464 26794590 -97281582 + GA-rich Low_complexity Low_complexity 2 128 0 4 789 380 103 73 0 chr9 26794592 26794660 -97281512 + L1_Mur3 LINE L1 3320 3392 -2485 4 789 654 82 221 36 chr9 26794695 26794835 -97281337 + RLTR28 LTR ERVL 95 260 -264 4 789 1150 163 53 84 chr9 26794835 26795097 -97281075 + ORR1B1 LTR MaLR 1 254 -140 4 789 668 195 25 5 chr9 26795099 26795303 -97280869 + RLTR28 LTR ERVL 272 520 -4 4 789 5961 146 20 14 chr9 26795308 26795404 -97280768 + Lx6 LINE L1 4186 4286 -1594 4 789 189 0 0 0 chr9 26795404 26795425 -97280747 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 4 789 5961 146 20 14 chr9 26795425 26796387 -97279785 + Lx6 LINE L1 4287 5250 -630 4 789 1334 74 11 6 chr9 26796387 26796564 -97279608 + B2_Mm1t SINE B2 2 179 -14 4 789 242 234 141 0 chr9 26796636 26796700 -97279472 + Lx6 LINE L1 5974 6046 -1414 4 789 1085 319 144 34 chr9 26796693 26796936 -97279236 + Lx6 LINE L1 6157 6438 -620 4 789 324 0 0 0 chr9 26796936 26796972 -97279200 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 789 1691 255 37 58 chr9 26796972 26797601 -97278571 + Lx6 LINE L1 6439 7445 -15 4 789 1947 170 63 3 chr9 26799220 26799613 -97276559 - MTC LTR MaLR -25 396 1 4 789 398 209 23 0 chr9 26799999 26800085 -97276087 - PB1D10 SINE Alu 0 117 30 4 789 213 39 0 0 chr9 26800397 26800423 -97275749 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4 789 210 91 0 0 chr9 26800424 26800457 -97275715 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 789 283 242 0 16 chr9 26800507 26800570 -97275602 - RSINE1 SINE B4 -95 70 9 4 789 294 73 0 0 chr9 26800745 26800786 -97275386 + (A)n Simple_repeat Simple_repeat 1 41 0 4 789 507 240 112 0 chr9 26802035 26802160 -97274012 + B1_Mur2 SINE Alu 3 141 -8 4 789 267 104 0 0 chr9 26802326 26802374 -97273798 + (T)n Simple_repeat Simple_repeat 1 48 0 4 789 346 233 49 16 chr9 26802422 26802544 -97273628 + BC1_Mm scRNA scRNA 2 127 -25 4 789 270 190 17 0 chr9 26802661 26802719 -97273453 - L2c LINE L2 -11 3376 3318 4 789 562 270 29 0 chr9 26802861 26802998 -97273174 - B1F SINE Alu -8 141 1 4 789 424 288 56 0 chr9 26803256 26803381 -97272791 + B1F SINE Alu 17 148 -1 4 789 608 159 87 43 chr9 26803841 26803979 -97272193 + B1F2 SINE Alu 4 147 -2 4 789 24 32 0 0 chr9 26803981 26804012 -97272160 + AT_rich Low_complexity Low_complexity 1 31 0 4 789 299 284 0 0 chr9 26804397 26804464 -97271708 + RLTR19 LTR ERVK 11 77 -422 4 789 266 73 24 0 chr9 26804465 26804506 -97271666 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 4 789 354 174 43 0 chr9 26804510 26804579 -97271593 + RLTR19 LTR ERVK 81 152 -347 4 789 1049 162 180 25 chr9 26804587 26804865 -97271307 - ORR1A4 LTR MaLR -8 321 1 4 789 755 287 106 28 chr9 26804931 26805214 -97270958 + RLTR19 LTR ERVK 193 497 -2 4 789 702 222 40 80 chr9 26805217 26805467 -97270705 + RLTR11A2 LTR ERVK 29 268 -259 4 789 315 218 90 0 chr9 26805477 26805555 -97270617 + RLTR11A2 LTR ERVK 440 524 -3 4 789 699 230 48 74 chr9 26805635 26805865 -97270307 - ID_B1 SINE B4 0 224 1 4 789 417 271 9 9 chr9 26805917 26806025 -97270147 + B1_Mur3 SINE Alu 31 138 -11 4 789 28 61 0 0 chr9 26806270 26806319 -97269853 + AT_rich Low_complexity Low_complexity 1 49 0 4 789 284 212 164 26 chr9 26807858 26807962 -97268210 + B1F1 SINE Alu 9 116 -33 4 789 306 0 0 0 chr9 26807962 26807996 -97268176 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 789 475 281 0 62 chr9 26808083 26808212 -97267960 - RSINE1 SINE B4 -42 123 3 4 789 322 143 155 14 chr9 26808219 26808290 -97267882 + L1MA8 LINE L1 5867 5947 -344 4 789 354 234 13 0 chr9 26808303 26808380 -97267792 + ID_B1 SINE B4 134 211 -13 4 789 324 263 19 48 chr9 26808420 26808524 -97267648 - ID_B1 SINE B4 -33 191 91 4 789 240 290 58 0 chr9 26808725 26808794 -97267378 - RSINE1 SINE B4 -74 91 19 4 789 274 232 105 47 chr9 26808857 26808943 -97267229 - B1F SINE Alu -58 91 1 4 789 517 219 0 28 chr9 26809200 26809308 -97266864 + PB1D7 SINE Alu 6 110 -10 4 789 871 190 0 0 chr9 26810066 26810208 -97265964 - B1_Mur4 SINE Alu -7 143 2 4 789 863 88 11 179 chr9 26810222 26810401 -97265771 - B1_Mur4 SINE Alu 0 150 2 4 789 803 223 119 5 chr9 26810431 26810625 -97265547 - B3 SINE B2 0 216 1 4 789 290 364 110 23 chr9 26810683 26810984 -97265188 - Lx8 LINE L1 -106 7367 7041 4 789 272 232 0 0 chr9 26811633 26811689 -97264483 - MER46C DNA MER2_type -1 337 282 4 789 434 235 0 19 chr9 26811804 26811908 -97264264 + Lx6 LINE L1 7260 7361 -99 4 789 451 245 35 28 chr9 26812171 26812314 -97263858 - B1F SINE Alu -4 145 2 4 789 1363 74 31 11 chr9 26813697 26813888 -97262284 + B2_Mm2 SINE B2 1 195 0 4 789 259 300 11 22 chr9 26814239 26814331 -97261841 + PB1 SINE Alu 30 120 -7 4 789 368 250 18 80 chr9 26818437 26818550 -97257622 - PB1D7 SINE Alu -2 118 13 4 789 1202 55 0 0 chr9 26818598 26818744 -97257428 + B1_Mus2 SINE Alu 2 147 0 4 789 457 244 121 95 chr9 26818790 26818980 -97257192 - B3A SINE B2 0 198 4 4 789 210 264 143 76 chr9 26819881 26820000 -97256172 - ID_B1 SINE B4 -2 222 96 4 789 23 33 0 0 chr9 26820183 26820213 -97255959 + AT_rich Low_complexity Low_complexity 1 30 0 4 789 636 178 84 56 chr9 26820746 26820889 -97255283 - B1_Mm SINE Alu 0 147 1 4 789 403 258 64 11 chr9 26821897 26821991 -97254181 + B1F2 SINE Alu 1 99 -50 4 789 276 264 104 52 chr9 26823030 26823126 -97253046 - Charlie4z DNA MER1_type -30 137 37 4 789 1317 145 210 11 chr9 26823438 26823710 -97252462 + ORR1A4 LTR MaLR 1 326 -3 4 789 486 172 131 0 chr9 26824429 26824528 -97251644 - B1_Mur1 SINE Alu -4 145 34 4 789 351 128 33 55 chr9 26824568 26824659 -97251513 - PB1D9 SINE Alu 0 120 32 4 789 294 95 0 0 chr9 26824844 26824886 -97251286 + (CTTG)n Simple_repeat Simple_repeat 1 42 0 4 789 2399 98 54 68 chr9 26824979 26825159 -97251013 + RLTR28 LTR ERVL 30 217 -307 4 789 1259 27 0 0 chr9 26825159 26825306 -97250866 + B1_Mus1 SINE Alu 2 148 0 4 789 2399 98 54 68 chr9 26825306 26825608 -97250564 + RLTR28 LTR ERVL 218 505 -19 4 789 441 253 0 0 chr9 26825616 26825707 -97250465 + PB1D10 SINE Alu 12 102 -15 4 789 256 226 63 21 chr9 26826495 26826590 -97249582 + MER63D DNA AcHobo 36 134 -927 4 789 399 286 40 40 chr9 26827253 26827377 -97248795 - PB1 SINE Alu -2 125 2 4 789 905 244 30 0 chr9 26827432 26827633 -97248539 + B3 SINE B2 6 212 -4 4 789 324 0 0 0 chr9 26827641 26827677 -97248495 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 4 789 3680 107 94 41 chr9 26827818 26828172 -97248000 - RMER17A LTR ERVK 0 751 419 4 789 1073 71 18 6 chr9 26828172 26828342 -97247830 + (GA)n Simple_repeat Simple_repeat 2 173 0 4 789 3680 107 94 41 chr9 26828342 26828700 -97247472 - RMER17A LTR ERVK -333 418 3 4 789 582 222 26 2 chr9 26828775 26828907 -97247265 - B1F SINE Alu -16 133 1 4 789 23 0 0 0 chr9 26828976 26828999 -97247173 + AT_rich Low_complexity Low_complexity 1 23 0 4 789 273 202 35 23 chr9 26829003 26829089 -97247083 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 789 242 254 14 43 chr9 26829729 26829799 -97246373 + ID4 SINE ID 5 72 -11 5 789 183 129 0 0 chr9 26829801 26829832 -97246340 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 789 180 0 0 0 chr9 26830039 26830059 -97246113 + (GTTTG)n Simple_repeat Simple_repeat 4 23 0 5 789 707 159 58 36 chr9 26830063 26830200 -97245972 - B1_Mur3 SINE Alu -7 142 3 5 789 450 276 8 17 chr9 26830926 26831044 -97245128 - PB1D10 SINE Alu 0 117 1 5 789 221 0 35 0 chr9 26831841 26831870 -97244302 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 789 555 56 0 0 chr9 26832771 26832842 -97243330 + (GAGAA)n Simple_repeat Simple_repeat 2 72 0 5 789 912 193 0 0 chr9 26833507 26833657 -97242515 + B1_Mur4 SINE Alu 1 150 0 5 789 801 222 168 0 chr9 26833676 26833861 -97242311 - B3 SINE B2 0 216 1 5 789 566 259 0 0 chr9 26833868 26833984 -97242188 - PB1D10 SINE Alu -1 116 1 5 789 347 271 18 45 chr9 26834715 26834827 -97241345 - PB1D10 SINE Alu -5 112 4 5 789 767 197 13 13 chr9 26836040 26836189 -97239983 - B1_Mur1 SINE Alu 0 149 1 5 789 201 244 0 0 chr9 26837687 26837728 -97238444 + C-rich Low_complexity Low_complexity 1 41 0 5 789 207 156 0 0 chr9 26838494 26838526 -97237646 + G-rich Low_complexity Low_complexity 5 36 0 5 789 402 229 12 12 chr9 26838651 26838735 -97237437 + B1F SINE Alu 29 112 -37 5 789 209 33 33 0 chr9 26838736 26838766 -97237406 + (TAA)n Simple_repeat Simple_repeat 2 32 0 5 789 2985 83 8 8 chr9 26838992 26839392 -97236780 + MTB LTR MaLR 1 400 0 5 789 1329 215 155 16 chr9 26840118 26840505 -97235667 + BGLII_B LTR ERVK 1 441 0 5 789 969 178 22 16 chr9 26840505 26840688 -97235484 - URR1A DNA MER1_type -42 184 1 5 789 2297 291 115 50 chr9 26840689 26841071 -97235101 + RMER15-int LTR ERVL 297 716 -4283 5 789 1606 41 0 10 chr9 26841071 26841268 -97234904 + B2_Mm2 SINE B2 1 195 0 5 789 1154 50 7 0 chr9 26841274 26841415 -97234757 + B1_Mus1 SINE Alu 1 142 -6 5 789 2297 291 115 50 chr9 26841415 26842086 -97234086 + RMER15-int LTR ERVL 717 1426 -3573 5 789 428 208 189 0 chr9 26844327 26844433 -97231739 - B3 SINE B2 0 216 91 5 789 3540 28 0 0 chr9 26845042 26845437 -97230735 + MTA_Mm LTR MaLR 1 395 -1 5 789 957 157 7 0 chr9 26845747 26845894 -97230278 + B1_Mur2 SINE Alu 1 148 -1 5 789 314 227 300 0 chr9 26845919 26845930 -97230242 + ID_B1 SINE B4 80 137 -87 5 789 410 229 12 35 chr9 26845930 26846016 -97230156 + B1F1 SINE Alu 10 93 -56 5 789 314 227 300 0 chr9 26846016 26846029 -97230143 + ID_B1 SINE B4 138 222 -2 5 789 629 262 11 111 chr9 26846034 26846214 -97229958 + RSINE1 SINE B4 2 163 -2 5 789 1523 235 82 10 chr9 26846582 26846973 -97229199 - MTD LTR MaLR 0 419 1 5 789 295 261 0 0 chr9 26847294 26847363 -97228809 + ID4_ SINE ID 2 70 -13 5 789 337 274 21 21 chr9 26847785 26847882 -97228290 - PB1D10 SINE Alu -16 101 5 5 789 533 129 0 0 chr9 26847955 26848040 -97228132 - B1_Mus2 SINE Alu -21 126 42 5 789 266 214 125 28 chr9 26847979 26848051 -97228121 - MT2B LTR ERVL -344 257 179 5 789 924 275 65 24 chr9 26848216 26848507 -97227665 + MTD LTR MaLR 102 404 -15 5 789 382 257 45 27 chr9 26848560 26848672 -97227500 - ORR1E LTR MaLR -221 138 25 5 789 450 79 0 0 chr9 26848755 26848818 -97227354 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 789 504 224 158 0 chr9 26849259 26849411 -97226761 + MER2 DNA MER2_type 86 261 -84 5 789 3648 204 75 102 chr9 26849527 26850934 -97225238 - Lx9 LINE L1 -1535 6109 4690 5 789 533 262 87 55 chr9 26851631 26851906 -97224266 - B4A SINE B4 -4 288 5 5 789 232 294 160 21 chr9 26851953 26852047 -97224125 + PB1D10 SINE Alu 10 116 -1 5 789 449 232 176 0 chr9 26852298 26852423 -97223749 + B1_Mus2 SINE Alu 1 147 0 5 789 730 191 14 0 chr9 26852910 26853051 -97223121 + URR1B DNA MER1_type 83 225 0 5 789 297 293 37 68 chr9 26853051 26853071 -97223101 - CYRA11_Mm Unknown Y-chromosome -305 312 157 5 789 200 200 0 20 chr9 26853358 26853409 -97222763 + GA-rich Low_complexity Low_complexity 6 55 0 5 789 442 220 45 179 chr9 26853663 26853993 -97222179 + MER44A DNA MER2_type 40 329 -10 5 789 552 221 94 51 chr9 26854241 26854379 -97221793 + B1_Mur1 SINE Alu 6 149 0 5 789 185 375 58 0 chr9 26854664 26854768 -97221404 + MIRb SINE MIR 8 117 -151 5 789 775 215 0 7 chr9 26854889 26855025 -97221147 - B1_Mur1 SINE Alu -13 136 2 5 789 286 194 72 41 chr9 26856563 26856660 -97219512 - B1F SINE Alu -2 147 48 5 789 393 164 8 41 chr9 26856660 26856781 -97219391 + CT-rich Low_complexity Low_complexity 1 117 0 5 789 507 324 14 7 chr9 26856791 26856937 -97219235 - RSINE1 SINE B4 -14 151 5 5 789 805 161 0 7 chr9 26857029 26857167 -97219005 + B1_Mur4 SINE Alu 14 150 0 5 789 198 71 0 0 chr9 26857534 26857562 -97218610 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 789 383 294 20 105 chr9 26857576 26857728 -97218444 - RSINE1 SINE B4 -12 153 15 5 789 419 277 9 9 chr9 26858057 26858170 -97218002 - PB1D10 SINE Alu -4 113 1 5 789 252 183 185 30 chr9 26858339 26858474 -97217698 - L1MC5 LINE L1 -190 7771 7616 5 789 712 201 98 52 chr9 26858487 26858681 -97217491 - B3 SINE B2 -10 206 4 5 789 421 365 52 20 chr9 26860354 26860659 -97215513 - L1MA4A LINE L1 -401 5902 5588 5 789 512 202 64 0 chr9 26860674 26860783 -97215389 - PB1D9 SINE Alu -3 117 2 5 789 228 67 0 0 chr9 26860990 26861020 -97215152 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 5 789 199 89 44 0 chr9 26861033 26861064 -97215108 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 5 789 1187 54 0 13 chr9 26861064 26861214 -97214958 - B1_Mus1 SINE Alu 0 148 1 5 789 199 89 44 0 chr9 26861214 26861227 -97214945 + (TTTTTG)n Simple_repeat Simple_repeat 3 16 0 5 789 263 284 129 60 chr9 26861237 26861353 -97214819 - RSINE1 SINE B4 -1 164 41 5 789 447 236 303 6 chr9 26861429 26861590 -97214582 - B3 SINE B2 -7 209 1 5 789 307 83 371 18 chr9 26862159 26862264 -97213908 - B2_Mm2 SINE B2 -7 188 47 5 789 1132 90 24 0 chr9 26862334 26862500 -97213672 - B2_Mm1t SINE B2 -22 171 2 5 789 257 158 0 0 chr9 26862603 26862641 -97213531 - RSINE1 SINE B4 -20 145 108 5 789 407 258 8 98 chr9 26863289 26863422 -97212750 + B1_Mus2 SINE Alu 5 125 -22 5 789 226 289 0 0 chr9 26863821 26863873 -97212299 + PB1D7 SINE Alu 1 52 -68 5 789 186 133 0 0 chr9 26863905 26863935 -97212237 + (A)n Simple_repeat Simple_repeat 1 30 0 5 789 491 224 143 57 chr9 26864246 26864421 -97211751 - B3A SINE B2 0 198 9 5 789 664 237 240 25 chr9 26864435 26864677 -97211495 - ORR1D2 LTR MaLR -75 295 2 5 789 24 32 0 0 chr9 26864824 26864855 -97211317 + AT_rich Low_complexity Low_complexity 1 31 0 5 789 562 215 48 90 chr9 26864864 26865053 -97211119 - B3A SINE B2 -16 182 2 5 789 203 121 65 65 chr9 26865200 26865262 -97210910 + T-rich Low_complexity Low_complexity 3 64 0 5 789 225 0 0 0 chr9 26865767 26865792 -97210380 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 789 400 162 27 0 chr9 26865963 26866037 -97210135 - MTE2a LTR MaLR -5 374 299 5 789 395 286 136 0 chr9 26866059 26866206 -97209966 - MTE2a LTR MaLR -155 224 58 5 789 2020 146 65 3 chr9 26866741 26867113 -97209059 + MTC LTR MaLR 19 413 -8 5 789 410 291 131 12 chr9 26867214 26867458 -97208714 - MLT1B LTR MaLR -59 331 59 5 789 1431 80 37 0 chr9 26867471 26867658 -97208514 - B2_Mm2 SINE B2 0 195 2 5 789 1691 31 0 0 chr9 26867692 26867884 -97208288 + B2_Mm1a SINE B2 2 193 0 5 789 484 268 87 8 chr9 26868178 26868354 -97207818 + MLT1A1 LTR MaLR 159 392 -16 5 789 422 258 83 57 chr9 26868803 26868977 -97207195 - B3A SINE B2 -7 209 30 5 789 1224 178 186 13 chr9 26868984 26869291 -97206881 - RMER16 LTR ERVK -103 430 71 5 790 498 312 0 0 chr9 26872381 26872506 -97203666 - RSINE1 SINE B4 -37 128 4 5 790 590 186 249 6 chr9 26872521 26872694 -97203478 - B3 SINE B2 -1 215 1 5 790 759 72 0 0 chr9 26873680 26873791 -97202381 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 790 434 292 59 39 chr9 26873800 26874003 -97202169 - B4A SINE B4 0 292 86 5 790 300 303 46 0 chr9 26874002 26874111 -97202061 - B1F SINE Alu -11 138 25 5 790 525 290 77 57 chr9 26874747 26874886 -97201286 - B3A SINE B2 0 198 56 5 790 4097 123 84 25 chr9 26874886 26875600 -97200572 - RMER6A LTR ERVK 0 756 1 5 790 525 290 77 57 chr9 26875600 26875654 -97200518 - B3A SINE B2 -143 55 2 5 790 1216 49 0 0 chr9 26875739 26875882 -97200290 + B1_Mm SINE Alu 5 147 0 5 790 25 0 0 0 chr9 26875882 26875907 -97200265 + AT_rich Low_complexity Low_complexity 1 25 0 5 790 473 242 124 48 chr9 26877761 26878044 -97198128 - MTEa LTR MaLR -8 371 1 5 790 1110 181 65 0 chr9 26878137 26878336 -97197836 + B3 SINE B2 1 212 -4 5 790 217 292 0 44 chr9 26878341 26878409 -97197763 + B4 SINE B4 80 144 -148 5 790 487 186 126 44 chr9 26878439 26878574 -97197598 + B4 SINE B4 128 273 -19 5 790 413 234 36 9 chr9 26881518 26881630 -97194542 + L1MA5 LINE L1 6184 6298 -2 5 790 563 261 78 0 chr9 26881934 26882087 -97194085 - RSINE1 SINE B4 0 165 1 5 790 467 198 233 0 chr9 26883616 26883732 -97192440 + ID_B1 SINE B4 77 219 -5 6 790 7070 197 69 28 chr9 26883932 26885976 -97190196 + Lx7 LINE L1 827 2991 -3155 6 790 324 158 0 0 chr9 26886076 26886133 -97190039 + (CATA)n Simple_repeat Simple_repeat 4 60 0 6 790 468 226 57 61 chr9 26886190 26886350 -97189822 + B2_Mm2 SINE B2 50 203 -13 6 790 4707 252 115 10 chr9 26886383 26887089 -97189083 + Lx7 LINE L1 5103 5878 -1818 6 790 336 48 0 0 chr9 26887089 26887131 -97189041 + (CATA)n Simple_repeat Simple_repeat 4 45 0 6 790 4707 256 73 39 chr9 26887131 26888311 -97187861 + Lx7 LINE L1 5879 7110 -586 6 790 270 244 31 62 chr9 26888385 26888481 -97187691 + Lx7 LINE L1 7240 7332 -364 6 790 225 261 23 85 chr9 26888536 26888666 -97187506 + Lx7 LINE L1 7565 7686 -10 6 790 22 0 0 0 chr9 26888696 26888718 -97187454 + AT_rich Low_complexity Low_complexity 1 22 0 6 790 239 244 88 89 chr9 26889612 26889754 -97186418 + B3A SINE B2 6 182 -16 6 790 271 331 92 49 chr9 26891764 26891948 -97184224 + B3 SINE B2 1 192 -24 6 790 265 263 88 44 chr9 26892127 26892141 -97184031 + CYRA11_Mm Unknown Y-chromosome 151 249 -368 6 790 730 181 22 0 chr9 26892141 26892279 -97183893 - URR1B DNA MER1_type 0 225 85 6 790 490 219 0 10 chr9 26892903 26893000 -97183172 - PB1D10 SINE Alu -17 100 5 6 790 588 136 34 16 chr9 26894730 26894842 -97181330 + B1_Mus2 SINE Alu 37 143 -6 6 790 378 139 0 0 chr9 26895588 26895660 -97180512 + (CTG)n Simple_repeat Simple_repeat 1 72 0 6 790 268 167 126 35 chr9 26897711 26897765 -97178407 - RLTR11A LTR ERVK -17 511 457 6 790 252 0 0 0 chr9 26897765 26897793 -97178379 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 790 1281 190 111 27 chr9 26897793 26898146 -97178026 - RLTR11A LTR ERVK -72 456 25 6 790 471 285 150 34 chr9 26899536 26900314 -97175858 - L1M3 LINE L1 -743 5400 4453 6 790 1153 68 7 0 chr9 26901468 26901614 -97174558 + B1_Mus2 SINE Alu 1 147 0 6 790 182 235 107 36 chr9 26902080 26902164 -97174008 + L2 LINE L2 172 261 -3158 6 790 30 59 0 0 chr9 26902797 26902848 -97173324 + AT_rich Low_complexity Low_complexity 1 51 0 6 790 254 245 110 20 chr9 26903211 26903311 -97172861 - ID_B1 SINE B4 -93 131 23 6 790 1224 54 0 0 chr9 26903701 26903848 -97172324 + B1_Mm SINE Alu 1 147 0 6 790 180 0 0 0 chr9 26905803 26905823 -97170349 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 6 790 201 162 0 0 chr9 26908228 26908265 -97167907 + T-rich Low_complexity Low_complexity 1 37 0 6 790 918 106 41 28 chr9 26908266 26908411 -97167761 - B1_Mur4 SINE Alu -2 148 2 6 790 381 282 218 28 chr9 26908412 26908729 -97167443 - L1MC5 LINE L1 -177 7784 7408 6 790 275 236 0 0 chr9 26910036 26910091 -97166081 + B1F SINE Alu 67 121 -28 6 790 405 175 8 47 chr9 26910112 26910239 -97165933 - B3 SINE B2 -6 210 10 6 790 365 291 80 20 chr9 26910242 26910393 -97165779 + L1M4 LINE L1 5052 5211 -935 6 790 777 211 48 34 chr9 26910661 26910867 -97165305 + B3 SINE B2 2 210 -6 6 790 219 36 0 0 chr9 26910867 26910895 -97165277 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 790 368 216 223 25 chr9 26911596 26911753 -97164419 - B3A SINE B2 -10 188 1 6 790 295 301 0 52 chr9 26911996 26912073 -97164099 - ID4_ SINE ID -8 75 3 6 790 566 247 152 18 chr9 26913486 26913651 -97162521 + B3A SINE B2 1 187 -11 6 790 926 160 0 27 chr9 26913674 26913822 -97162350 + B1_Mur1 SINE Alu 5 148 -1 6 790 646 295 99 5 chr9 26914342 26914543 -97161629 - B4 SINE B4 -70 222 3 6 790 1535 154 137 3 chr9 26914570 26914876 -97161296 - MTD LTR MaLR 0 419 73 6 790 1522 230 125 5 chr9 26914876 26915261 -97160911 + Lx8 LINE L1 6292 6722 -751 6 790 1659 289 67 27 chr9 26915278 26915950 -97160222 + Lx8 LINE L1 6774 7472 -1 6 790 24 0 0 0 chr9 26915950 26915974 -97160198 + AT_rich Low_complexity Low_complexity 1 24 0 6 790 407 210 4 13 chr9 26915988 26916092 -97160080 + B1F1 SINE Alu 2 141 -8 6 790 237 230 171 26 chr9 26918893 26918969 -97157203 + PB1D10 SINE Alu 21 107 -13 6 790 253 265 0 8 chr9 26918980 26919098 -97157074 + ORR1B1-int LTR MaLR 631 747 -762 6 790 812 78 2 11 chr9 26919001 26919125 -97157047 + B1_Mus1 SINE Alu 5 120 0 6 790 668 165 49 4 chr9 26919130 26919267 -97156905 + B1_Mur2 SINE Alu 1 148 -1 6 790 416 320 116 47 chr9 26919426 26919659 -97156513 + MLT2D LTR ERVL 159 407 -7 6 790 660 269 15 30 chr9 26919867 26920066 -97156106 - B3A SINE B2 -2 196 1 6 790 276 30 0 0 chr9 26920174 26920207 -97155965 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 790 1236 54 0 0 chr9 26922451 26922599 -97153573 + B1_Mus1 SINE Alu 1 148 0 6 790 274 243 61 35 chr9 26922651 26922818 -97153354 + L1MD3 LINE L1 6054 6263 -1732 6 790 390 234 190 7 chr9 26923030 26923243 -97152929 + L1MD3 LINE L1 6636 6894 -988 6 790 619 226 107 56 chr9 26923264 26923427 -97152745 + B3 SINE B2 3 178 -38 6 790 1266 98 16 5 chr9 26923427 26923611 -97152561 + B2_Mm2 SINE B2 3 188 -7 6 790 619 226 107 56 chr9 26923611 26923644 -97152528 + B3 SINE B2 179 209 -7 6 790 557 204 0 9 chr9 26923672 26923781 -97152391 + B1_Mus1 SINE Alu 1 108 -40 6 790 339 229 90 83 chr9 26923781 26923799 -97152373 + MT2B LTR ERVL 179 285 -316 6 790 585 82 0 10 chr9 26924024 26924122 -97152050 + L1_Mus4 LINE L1 6536 6632 -4 6 790 372 219 176 71 chr9 26924174 26924327 -97151845 + B3A SINE B2 34 205 -11 6 790 451 262 73 88 chr9 26924350 26924753 -97151419 + L1M4 LINE L1 2942 3344 -2802 6 790 207 0 0 0 chr9 26924753 26924776 -97151396 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 790 1179 43 0 0 chr9 26924776 26924914 -97151258 - B1_Mus2 SINE Alu -9 138 1 6 790 451 245 96 99 chr9 26924914 26925064 -97151108 + L1M4 LINE L1 3333 3499 -2641 6 790 335 237 105 5 chr9 26925099 26925207 -97150965 + L1M4 LINE L1 3623 3736 -2410 6 790 21 0 0 0 chr9 26925374 26925395 -97150777 + AT_rich Low_complexity Low_complexity 1 21 0 6 790 315 281 11 33 chr9 26925443 26925535 -97150637 + L1M4 LINE L1 4066 4155 -1991 6 790 292 194 74 21 chr9 26925561 26925656 -97150516 + PB1D9 SINE Alu 15 114 -6 6 790 339 288 7 81 chr9 26925727 26925863 -97150309 + MER58A DNA MER1_type 16 141 -83 6 790 407 194 126 7 chr9 26925870 26925999 -97150173 + L1M4 LINE L1 5357 5501 -682 6 790 415 184 242 51 chr9 26926381 26926524 -97149648 + B3 SINE B2 1 165 -51 6 790 1473 36 0 0 chr9 26926524 26926775 -97149397 + (CA)n Simple_repeat Simple_repeat 1 251 0 6 790 415 184 242 51 chr9 26926775 26926806 -97149366 + B3 SINE B2 166 209 -7 6 790 522 221 44 9 chr9 26927664 26927778 -97148394 + B1F1 SINE Alu 7 124 -25 6 790 191 318 118 0 chr9 26927961 26928071 -97148101 - MIR SINE MIR -18 244 122 6 790 575 281 105 6 chr9 26929044 26929199 -97146973 + B3A SINE B2 4 175 -23 6 790 228 111 0 0 chr9 26929199 26929235 -97146937 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 790 575 247 90 104 chr9 26929235 26929291 -97146881 + B3A SINE B2 165 211 -5 6 790 1965 146 8 100 chr9 26929372 26929442 -97146730 - ORR1B1 LTR MaLR 0 394 331 6 790 1204 55 0 0 chr9 26929442 26929587 -97146585 + B1_Mm SINE Alu 2 146 -1 6 790 1965 146 8 100 chr9 26929587 26929905 -97146267 - ORR1B1 LTR MaLR -64 330 42 6 790 791 237 31 14 chr9 26930267 26930489 -97145683 - URR1A DNA MER1_type 0 226 1 6 790 305 240 16 168 chr9 26931321 26931446 -97144726 + ID_B1 SINE B4 81 186 -38 6 790 333 0 0 0 chr9 26931459 26931496 -97144676 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 790 255 297 0 0 chr9 26931496 26931560 -97144612 + G-rich Low_complexity Low_complexity 1 64 0 6 790 234 0 0 0 chr9 26931850 26931876 -97144296 + (T)n Simple_repeat Simple_repeat 1 26 0 6 790 367 269 109 40 chr9 26931958 26932206 -97143966 + L1M2 LINE L1 4612 4876 -1267 6 790 687 267 28 6 chr9 26932213 26932390 -97143782 + B3 SINE B2 6 186 -30 6 790 463 118 24 0 chr9 26932527 26932612 -97143560 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 790 487 242 19 32 chr9 26932882 26933040 -97143132 + L1_Rod LINE L1 4830 4985 -862 6 790 334 226 58 19 chr9 26933564 26933668 -97142504 + L1M2 LINE L1 5108 5215 -928 6 790 486 225 0 0 chr9 26933788 26933877 -97142295 + B3 SINE B2 1 89 -127 6 790 228 250 0 200 chr9 26934160 26934265 -97141907 + RLTR24 LTR ERV1 385 468 -61 6 790 561 248 18 0 chr9 26934287 26934400 -97141772 + B3 SINE B2 91 205 -11 6 790 359 304 100 14 chr9 26934409 26934619 -97141553 + L1M2 LINE L1 5413 5640 -660 6 790 340 311 82 72 chr9 26934722 26934916 -97141256 + MMERGLN-int LTR ERV1 1647 1842 -5936 6 790 1127 333 89 29 chr9 26934968 26935799 -97140373 + MMERGLN-int LTR ERV1 2764 3875 -3681 6 790 327 314 72 59 chr9 26935912 26936230 -97139942 + MMERGLN-int LTR ERV1 3875 4249 -3307 6 790 491 279 1 13 chr9 26936706 26936877 -97139295 + MMERGLN-int LTR ERV1 3546 3688 -1375 6 790 2151 107 110 56 chr9 26936894 26937302 -97138870 + RLTR23 LTR ERV1 1 430 0 6 790 362 140 0 0 chr9 26937359 26937416 -97138756 - ORR1B2 LTR MaLR -305 62 6 6 790 213 39 0 0 chr9 26937418 26937444 -97138728 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 790 1234 98 27 16 chr9 26937550 26937736 -97138436 + B2_Mm2 SINE B2 3 190 -5 6 790 617 236 177 0 chr9 26937984 26938147 -97138025 + B3 SINE B2 1 191 -7 6 790 429 198 62 62 chr9 26938162 26938275 -97137897 + PB1D9 SINE Alu 8 120 0 6 790 677 327 25 65 chr9 26938299 26938517 -97137655 + B4 SINE B4 11 225 -67 6 790 470 212 126 22 chr9 26938517 26938652 -97137520 + B1_Mur1 SINE Alu 1 149 0 6 790 677 327 25 65 chr9 26938652 26938711 -97137461 + B4 SINE B4 226 277 -15 6 790 4457 103 47 37 chr9 26939090 26939817 -97136355 - RMER17A LTR ERVK -17 734 1 6 790 1692 188 13 75 chr9 26939897 26940295 -97135877 + ORR1D1 LTR MaLR 1 373 -1 6 790 239 163 0 23 chr9 26940665 26940709 -97135463 + ORR1D1 LTR MaLR 196 238 -136 6 790 307 295 119 59 chr9 26940969 26941171 -97135001 + B4A SINE B4 8 221 -71 6 790 375 265 48 19 chr9 26941419 26941523 -97134649 + PB1D7 SINE Alu 1 107 -13 6 790 668 214 83 13 chr9 26941879 26942035 -97134137 + B3 SINE B2 50 216 0 6 790 733 206 115 11 chr9 26942059 26942250 -97133922 + B3 SINE B2 1 211 -5 6 790 371 21 21 0 chr9 26942976 26943024 -97133148 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 6 790 366 289 37 0 chr9 26943106 26943241 -97132931 - MurSatRep1 Unknown Unknown -1389 748 609 6 790 495 202 0 0 chr9 26943353 26943457 -97132715 + CT-rich Low_complexity Low_complexity 4 107 0 6 790 964 195 97 0 chr9 26943476 26943661 -97132511 - B3 SINE B2 -13 203 1 6 790 1349 235 116 26 chr9 26943687 26944110 -97132062 + Lx8 LINE L1 6808 7268 -205 6 790 599 233 51 25 chr9 26944447 26944624 -97131548 - ID_B1 SINE B4 -43 249 72 7 790 223 299 57 11 chr9 26945113 26945201 -97130971 + MIR SINE MIR 40 131 -77 7 790 364 252 102 35 chr9 26945970 26946104 -97130068 - PB1D10 SINE Alu -20 129 7 7 790 23 0 0 0 chr9 26946444 26946467 -97129705 + AT_rich Low_complexity Low_complexity 1 23 0 7 790 911 171 0 0 chr9 26946479 26946625 -97129547 + B1_Mur4 SINE Alu 5 150 0 7 790 1446 64 32 0 chr9 26946750 26946937 -97129235 - B2_Mm1t SINE B2 0 193 1 7 790 1098 77 26 0 chr9 26946949 26947104 -97129068 - B2_Mm2 SINE B2 -10 185 27 7 790 1094 105 13 0 chr9 26947085 26947238 -97128934 + B2_Mm1a SINE B2 27 181 -12 7 790 345 98 325 26 chr9 26947302 26947416 -97128756 + B2_Mm2 SINE B2 47 194 -1 7 790 229 117 0 115 chr9 26947418 26947505 -97128667 + GA-rich Low_complexity Low_complexity 4 80 0 7 790 1228 61 0 0 chr9 26947508 26947655 -97128517 - B1_Mus1 SINE Alu -1 147 1 7 790 181 265 0 58 chr9 26947897 26947949 -97128223 - MIRb SINE MIR -23 245 197 7 790 286 184 24 0 chr9 26947977 26948042 -97128130 - PB1D10 SINE Alu 0 149 73 7 790 1736 297 109 60 chr9 26948848 26949804 -97126368 + Lx8 LINE L1 6464 7466 -7 7 790 343 229 26 174 chr9 26950341 26950497 -97125675 - B3A SINE B2 0 195 63 7 790 221 279 71 60 chr9 26950469 26950553 -97125619 - RSINE1 SINE B4 -61 104 20 7 790 1007 236 0 36 chr9 26950781 26951005 -97125167 + B3 SINE B2 1 216 0 7 790 1183 48 0 26 chr9 26951410 26951561 -97124611 + B1_Mus2 SINE Alu 1 147 0 7 790 1545 43 0 21 chr9 26952959 26953150 -97123022 - B2_Mm1a SINE B2 -5 188 2 7 790 2563 159 121 15 chr9 26953228 26953757 -97122415 + RMER4B LTR ERVK 1 585 0 7 790 1399 85 26 0 chr9 26953894 26954083 -97122089 + B2_Mm2 SINE B2 1 194 -1 7 790 258 32 0 0 chr9 26954457 26954488 -97121684 + (A)n Simple_repeat Simple_repeat 1 31 0 7 790 946 323 100 3 chr9 26954802 26955171 -97121001 + Tigger7 DNA MER2_type 34 438 -2053 7 790 271 265 127 8 chr9 26955184 26955302 -97120870 + Tigger7 DNA MER2_type 477 608 -1883 7 790 239 293 40 0 chr9 26955330 26955405 -97120767 + Tigger7 DNA MER2_type 2408 2485 -6 7 790 563 306 92 39 chr9 26955642 26955924 -97120248 + MLT1A0 LTR MaLR 16 312 -53 7 790 257 264 97 0 chr9 26956155 26956196 -97119976 + B1F1 SINE Alu 1 48 -101 7 790 669 241 104 18 chr9 26956196 26956411 -97119761 + B4A SINE B4 4 238 -54 7 790 249 108 0 0 chr9 26956411 26956448 -97119724 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 790 189 178 0 0 chr9 26956459 26956504 -97119668 + GA-rich Low_complexity Low_complexity 1 45 0 7 790 223 118 0 0 chr9 26956506 26956540 -97119632 + B1F SINE Alu 89 122 -27 7 790 23 33 0 0 chr9 26957246 26957276 -97118896 + AT_rich Low_complexity Low_complexity 1 30 0 7 790 724 247 17 17 chr9 26958060 26958241 -97117931 + B3A SINE B2 3 183 -15 7 790 992 226 36 0 chr9 26958268 26958463 -97117709 + B3 SINE B2 1 202 -14 7 790 2197 166 3 39 chr9 26958464 26958852 -97117320 + ORR1D1 LTR MaLR 1 374 0 7 790 387 273 44 126 chr9 26960482 26960502 -97115670 - B4 SINE B4 -53 239 94 7 790 580 220 14 50 chr9 26960502 26960641 -97115531 - B1F2 SINE Alu -7 142 9 7 790 512 212 44 9 chr9 26960670 26960784 -97115388 - B1F SINE Alu -20 129 12 7 790 512 283 47 47 chr9 26960913 26961106 -97115066 - B3A SINE B2 -2 196 4 7 790 1168 61 0 20 chr9 26961170 26961321 -97114851 + B1_Mus1 SINE Alu 1 148 0 7 790 186 71 0 0 chr9 26961321 26961349 -97114823 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 7 790 184 279 82 0 chr9 26962154 26962215 -97113957 + MIRb SINE MIR 136 201 -67 7 790 1267 159 9 9 chr9 26963281 26963497 -97112675 + B3 SINE B2 1 216 0 7 790 505 264 20 34 chr9 26963771 26963920 -97112252 - B1_Mur2 SINE Alu 0 149 3 7 790 605 190 158 59 chr9 26963931 26964121 -97112051 - B3A SINE B2 -4 212 3 7 790 183 80 0 0 chr9 26964154 26964179 -97111993 + (CAT)n Simple_repeat Simple_repeat 2 26 0 7 790 411 301 30 128 chr9 26964212 26964376 -97111796 - RSINE1 SINE B4 -17 148 1 7 790 216 0 0 0 chr9 26964434 26964458 -97111714 + (T)n Simple_repeat Simple_repeat 1 24 0 7 790 1235 48 0 0 chr9 26964458 26964604 -97111568 - B1_Mus2 SINE Alu 0 147 2 7 790 898 171 14 0 chr9 26964653 26964799 -97111373 + B1_Mur4 SINE Alu 1 148 -2 7 790 1002 134 7 0 chr9 26966001 26966150 -97110022 - B1_Mur4 SINE Alu 0 150 1 7 790 514 186 12 0 chr9 26966683 26966769 -97109403 - B1_Mur1 SINE Alu -42 107 21 7 790 937 252 65 19 chr9 26967308 26967522 -97108650 + ID_B1 SINE B4 1 224 0 7 790 713 177 0 58 chr9 26967538 26967694 -97108478 + B1_Mur3 SINE Alu 3 149 0 7 790 22 0 0 0 chr9 26967694 26967716 -97108456 + AT_rich Low_complexity Low_complexity 1 22 0 7 790 609 14 0 0 chr9 26968596 26968666 -97107506 + (GA)n Simple_repeat Simple_repeat 1 70 0 7 790 504 0 0 0 chr9 26968987 26969043 -97107129 + (TTTTG)n Simple_repeat Simple_repeat 3 58 0 7 790 595 199 43 58 chr9 26969045 26969184 -97106988 - B1_Mur4 SINE Alu -13 137 1 7 790 1076 98 20 0 chr9 26969254 26969407 -97106765 - B2_Mm2 SINE B2 -6 189 34 7 790 1361 81 38 0 chr9 26970514 26970700 -97105472 + B2_Mm1a SINE B2 1 193 0 7 790 527 204 43 17 chr9 26970770 26970885 -97105287 - B1_Mur1 SINE Alu -5 144 27 7 790 243 299 129 52 chr9 26971059 26971214 -97104958 - RLTR13B2 LTR ERVK 0 822 656 7 790 262 105 0 0 chr9 26971480 26971518 -97104654 - B2_Mm2 SINE B2 -157 38 1 7 790 271 256 43 22 chr9 26972306 26972398 -97103774 - L1M5 LINE L1 -3085 3061 2968 7 790 738 286 15 0 chr9 26972481 26972680 -97103492 - B3 SINE B2 -12 204 3 7 790 229 319 29 0 chr9 26972771 26972840 -97103332 - ID4_ SINE ID -11 72 2 7 790 359 358 48 61 chr9 26972853 26973082 -97103090 - L1M5 LINE L1 -3341 2805 2580 7 790 233 270 15 31 chr9 26973261 26973326 -97102846 - LTR85a LTR Gypsy? -582 120 57 7 790 322 309 13 80 chr9 26973568 26973719 -97102453 + B1_Mur1 SINE Alu 3 143 -6 7 790 352 132 0 0 chr9 26973944 26973997 -97102175 + MTB_Mm LTR MaLR 1 53 -354 7 790 880 62 13 58 chr9 26973978 26974133 -97102039 + MTB_Mm-int LTR MaLR 951 1098 0 7 790 3363 57 2 12 chr9 26974133 26974544 -97101628 + MTB_Mm LTR MaLR 1 407 0 7 790 2901 131 69 103 chr9 26975004 26975598 -97100574 + RMER15 LTR ERVL 2 575 0 7 790 7970 26 0 2 chr9 26975645 26976557 -97099615 - L1Md_F2 LINE L1 0 6582 5673 7 790 1124 29 64 7 chr9 26976832 26976973 -97099199 + B1_Mur4 SINE Alu 1 149 -1 7 790 1120 280 43 45 chr9 26978519 26978942 -97097230 + Ricksha_c DNA MuDR 484 905 -1143 7 790 939 241 11 0 chr9 26979103 26979277 -97096895 + MTEb LTR MaLR 1 176 -203 7 790 999 84 0 40 chr9 26979272 26979420 -97096752 + B1_Mus2 SINE Alu 6 147 0 7 790 267 31 0 0 chr9 26979862 26979894 -97096278 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 790 1007 97 89 28 chr9 26980100 26980280 -97095892 + B2_Mm2 SINE B2 1 191 -4 7 790 213 39 0 0 chr9 26980285 26980311 -97095861 + (GA)n Simple_repeat Simple_repeat 2 27 0 7 790 258 244 88 25 chr9 26980323 26980403 -97095769 - MTEb LTR MaLR 0 379 295 7 790 233 302 88 62 chr9 26980554 26980667 -97095505 - MLT1A1 LTR MaLR -290 118 3 7 790 1010 128 7 0 chr9 26981112 26981260 -97094912 - B1_Mur4 SINE Alu 0 150 2 7 790 728 65 9 0 chr9 26981266 26981373 -97094799 + (TC)n Simple_repeat Simple_repeat 1 108 0 7 790 311 113 38 0 chr9 26981380 26981433 -97094739 - B1_Mur4 SINE Alu -11 139 85 7 790 224 30 30 0 chr9 26981506 26981539 -97094633 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 790 216 0 0 0 chr9 26982128 26982152 -97094020 + (T)n Simple_repeat Simple_repeat 1 24 0 7 790 1437 78 16 10 chr9 26982255 26982448 -97093724 - B2_Mm2 SINE B2 0 195 2 7 790 617 266 35 14 chr9 26982451 26982596 -97093576 - B1F SINE Alu -1 148 1 7 790 299 280 61 128 chr9 26982455 26982619 -97093553 - B4 SINE B4 -69 223 71 7 790 207 0 0 0 chr9 26982969 26982992 -97093180 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 790 293 262 17 108 chr9 26983352 26983372 -97092800 + MT2B LTR ERVL 150 158 -443 7 790 503 257 30 0 chr9 26983372 26983473 -97092699 + B1F SINE Alu 3 106 -43 7 790 855 153 0 0 chr9 26984215 26984365 -97091807 + GA-rich Low_complexity Low_complexity 2 151 0 7 790 2457 76 13 0 chr9 26985207 26985524 -97090648 - ORR1A2 LTR MaLR 0 327 7 7 790 180 268 155 0 chr9 26985611 26985708 -97090464 + L2c LINE L2 3208 3319 -68 7 790 1986 136 24 82 chr9 26985843 26986219 -97089953 + ORR1B1 LTR MaLR 41 394 0 7 790 478 298 0 16 chr9 26986262 26986385 -97089787 - B1F1 SINE Alu 0 149 29 7 790 270 0 0 0 chr9 26988416 26988446 -97087726 + (T)n Simple_repeat Simple_repeat 1 30 0 7 790 344 198 232 32 chr9 26989438 26989563 -97086609 - MER117 DNA MER1_type -43 154 5 7 790 1109 123 6 0 chr9 26990753 26990932 -97085240 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 790 202 188 0 0 chr9 26990932 26990964 -97085208 + polypyrimidine Low_complexity Low_complexity 3 34 0 7 790 674 346 30 67 chr9 26991009 26991062 -97085110 - B4A SINE B4 0 292 243 7 790 1320 89 0 27 chr9 26991062 26991247 -97084925 - B2_Mm2 SINE B2 -14 181 2 7 790 674 346 30 67 chr9 26991247 26991490 -97084682 - B4A SINE B4 -50 242 7 7 790 459 0 0 0 chr9 26991520 26991571 -97084601 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 8 790 866 126 22 29 chr9 26992502 26992641 -97083531 + ORR1A1 LTR MaLR 209 346 0 8 790 1248 61 0 0 chr9 26992842 26992990 -97083182 + B1_Mus1 SINE Alu 1 148 0 8 790 239 224 0 13 chr9 26993923 26994000 -97082172 + CT-rich Low_complexity Low_complexity 2 77 0 8 790 21 0 0 0 chr9 26994238 26994259 -97081913 + AT_rich Low_complexity Low_complexity 1 21 0 8 790 1947 154 50 11 chr9 26994273 26994494 -97081678 - RMER17C LTR ERVK 0 410 182 8 790 216 0 0 0 chr9 26994494 26994518 -97081654 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 8 790 1947 197 56 45 chr9 26994518 26994847 -97081325 - RMER17C LTR ERVK -559 399 17 8 790 205 303 54 18 chr9 26994916 26995027 -97081145 + MIRc SINE MIR 74 188 -80 8 790 228 329 47 40 chr9 26996033 26996182 -97079990 - L2a LINE L2 0 3426 3277 8 790 291 54 0 0 chr9 26998638 26998675 -97077497 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 791 216 0 0 0 chr9 27001245 27001269 -97074903 + (C)n Simple_repeat Simple_repeat 1 24 0 1 791 718 173 71 0 chr9 27003339 27003466 -97072706 + B1_Mus1 SINE Alu 1 136 -12 2 791 207 0 0 0 chr9 27003469 27003492 -97072680 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 791 320 150 83 0 chr9 27003516 27003576 -97072596 - HAL1-3A_ME LINE L1 -818 2040 1976 4 791 647 267 11 17 chr9 27003595 27003774 -97072398 - B3A SINE B2 -16 182 5 5 791 30 27 0 0 chr9 27003894 27003931 -97072241 + AT_rich Low_complexity Low_complexity 1 37 0 6 791 249 167 0 40 chr9 27003946 27003996 -97072176 + B3 SINE B2 1 48 -168 7 791 468 0 0 0 chr9 27004106 27004158 -97072014 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 8 791 278 185 37 0 chr9 27004158 27004212 -97071960 - Lx8 LINE L1 -513 6960 6905 9 791 878 216 127 21 chr9 27004213 27004449 -97071723 - RMER1C Other Other -18 1324 1064 1 791 3306 301 40 33 chr9 27004480 27004615 -97071557 - Lx8 LINE L1 -546 6927 6785 9 791 1397 86 5 5 chr9 27004615 27004802 -97071370 + B2_Mm2 SINE B2 1 187 -8 1 791 3306 301 40 33 chr9 27004802 27005846 -97070326 - Lx8 LINE L1 -689 6784 5740 9 791 892 261 33 0 chr9 27005963 27006147 -97070025 + B3 SINE B2 4 193 -23 1 791 734 268 49 25 chr9 27006241 27006444 -97069728 - B3 SINE B2 -7 209 2 1 791 521 283 20 14 chr9 27006453 27006600 -97069572 - ID_B1 SINE B4 -5 219 72 1 791 372 289 129 25 chr9 27006792 27006955 -97069217 + MIRc SINE MIR 85 264 -4 1 791 294 88 9 0 chr9 27007854 27007902 -97068270 - B1_Mm SINE Alu -11 138 89 1 791 201 309 46 72 chr9 27007943 27008038 -97068134 - MIR SINE MIR -97 111 24 1 791 598 132 22 0 chr9 27008255 27008345 -97067827 + MTC LTR MaLR 1 92 -329 1 791 1983 171 20 23 chr9 27008345 27008698 -97067474 - ORR1B1 LTR MaLR -2 392 41 1 791 1879 169 29 7 chr9 27008703 27009012 -97067160 + MTC LTR MaLR 99 414 -7 1 791 285 369 66 13 chr9 27009978 27010129 -97066043 + MIRb SINE MIR 19 177 -91 2 791 296 302 0 0 chr9 27010135 27010198 -97065974 + ID4_ SINE ID 1 63 -20 2 791 236 343 0 15 chr9 27010141 27010209 -97065963 + tRNA-Ala-GCG tRNA tRNA 1 67 -8 2 791 534 16 0 0 chr9 27011134 27011197 -97064975 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 791 438 200 0 0 chr9 27012775 27012845 -97063327 + ID4 SINE ID 3 72 -11 2 791 2653 128 124 15 chr9 27013040 27013516 -97062656 + RLTR11A LTR ERVK 1 528 0 2 791 223 304 14 42 chr9 27013542 27013614 -97062558 + MIRb SINE MIR 117 186 -82 2 791 198 191 0 0 chr9 27013853 27013895 -97062277 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 2 791 1127 101 0 0 chr9 27015635 27015784 -97060388 + B2_Mm2 SINE B2 3 151 -44 2 791 342 111 339 9 chr9 27015812 27015924 -97060248 + B2_Mm2 SINE B2 47 195 0 2 791 251 286 0 60 chr9 27016226 27016293 -97059879 + RSINE1 SINE B4 3 65 -100 3 791 22 56 0 0 chr9 27016387 27016423 -97059749 + AT_rich Low_complexity Low_complexity 1 36 0 3 791 188 318 0 29 chr9 27016858 27016926 -97059246 - L2c LINE L2 -68 3319 3254 3 791 1153 214 98 111 chr9 27017741 27018120 -97058052 - MTE2a LTR MaLR 0 379 6 3 791 495 123 0 0 chr9 27019325 27019406 -97056766 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 791 470 328 52 42 chr9 27019429 27019620 -97056552 - B4 SINE B4 -17 275 83 3 791 1022 296 114 26 chr9 27019912 27020342 -97055830 - Lx8 LINE L1 -312 7161 6694 3 791 951 26 0 0 chr9 27020750 27020864 -97055308 + (CCCTAA)n Simple_repeat Simple_repeat 3 116 0 3 791 630 248 0 0 chr9 27020864 27020989 -97055183 + B1F2 SINE Alu 24 148 -1 3 791 669 233 7 20 chr9 27020994 27021143 -97055029 + B1_Mus1 SINE Alu 1 147 -1 3 791 751 106 195 0 chr9 27021151 27021274 -97054898 + B1_Mus1 SINE Alu 2 148 0 4 791 273 55 35 35 chr9 27021274 27021331 -97054841 + (CAAAC)n Simple_repeat Simple_repeat 5 61 0 4 791 202 267 80 6 chr9 27021639 27021754 -97054418 - MIRb SINE MIR -71 137 10 4 791 414 0 0 0 chr9 27022015 27022061 -97054111 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 791 351 306 54 27 chr9 27022396 27022507 -97053665 - PB1D10 SINE Alu -3 114 1 4 791 869 130 8 0 chr9 27022524 27022655 -97053517 + B1_Mur4 SINE Alu 1 132 -18 4 791 700 366 8 12 chr9 27022737 27022991 -97053181 - B4A SINE B4 0 292 40 4 791 1859 172 111 8 chr9 27022996 27023370 -97052802 + MTC LTR MaLR 5 401 -20 4 791 3603 139 105 35 chr9 27024410 27025117 -97051055 - RMER6A LTR ERVK 0 756 1 4 791 513 0 0 0 chr9 27025838 27025895 -97050277 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 791 380 324 0 9 chr9 27026424 27026530 -97049642 + PB1D10 SINE Alu 1 105 -12 5 791 1146 72 0 0 chr9 27026532 27026670 -97049502 + B1_Mus1 SINE Alu 3 140 -8 5 791 23 0 0 0 chr9 27026725 27026748 -97049424 + AT_rich Low_complexity Low_complexity 1 23 0 5 791 767 244 74 15 chr9 27026816 27027086 -97049086 - L1MA8 LINE L1 -3 6288 6003 5 791 852 197 24 81 chr9 27027215 27027425 -97048747 - B3A SINE B2 0 198 1 5 791 963 241 84 20 chr9 27027764 27028107 -97048065 - L1MA5 LINE L1 -62 6238 5874 5 791 1109 175 62 39 chr9 27028886 27029094 -97047078 - B3 SINE B2 -3 213 1 5 791 529 214 84 15 chr9 27030127 27030275 -97045897 + MLT1A1 LTR MaLR 248 392 -16 5 791 245 258 76 0 chr9 27030291 27030357 -97045815 + ID4 SINE ID 3 73 -10 5 791 442 278 78 16 chr9 27030502 27030630 -97045542 + B1F SINE Alu 2 137 -12 5 791 1147 63 7 0 chr9 27030756 27030899 -97045273 - B1_Mus1 SINE Alu 0 148 5 6 791 380 318 0 78 chr9 27030904 27031071 -97045101 - CYRA11_Mm Unknown Y-chromosome -206 411 258 6 791 996 135 0 0 chr9 27030935 27031076 -97045096 + URR1B DNA MER1_type 5 145 -80 6 791 236 65 46 46 chr9 27031106 27031171 -97045001 + A-rich Low_complexity Low_complexity 2 66 0 6 791 327 132 234 13 chr9 27031180 27031257 -97044915 + URR1B DNA MER1_type 131 224 -1 6 791 1225 232 49 156 chr9 27032351 27032801 -97043371 - MTD LTR MaLR 0 419 18 6 791 217 325 106 43 chr9 27033311 27033472 -97042700 - MIRc SINE MIR -84 184 14 6 791 214 253 170 57 chr9 27033645 27033773 -97042399 - MIRb SINE MIR -80 188 50 6 791 306 240 67 39 chr9 27034541 27034645 -97041527 - MIR SINE MIR -106 156 50 6 791 519 193 73 177 chr9 27034828 27035048 -97041124 + RMER19C LTR ERVK 392 588 -23 6 791 487 322 72 30 chr9 27035255 27035492 -97040680 - L1M5 LINE L1 -633 5540 5294 6 791 442 271 205 0 chr9 27035524 27035646 -97040526 - RSINE1 SINE B4 -17 148 2 7 791 5486 132 33 16 chr9 27035672 27036561 -97039611 - RMER17A2 LTR ERVK -2 904 1 7 791 222 171 0 0 chr9 27036570 27036611 -97039561 + GA-rich Low_complexity Low_complexity 4 44 0 7 791 772 275 72 66 chr9 27038029 27038376 -97037796 - MLT1A LTR MaLR 0 374 26 7 791 423 183 0 0 chr9 27038376 27038447 -97037725 + URR1B DNA MER1_type 1 71 -154 7 791 3181 40 5 39 chr9 27038453 27038571 -97037601 - L1_Mus2 LINE L1 -583 5983 5873 7 791 274 23 23 23 chr9 27038571 27038615 -97037557 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 791 1185 44 0 0 chr9 27038615 27038752 -97037420 - B1_Mm SINE Alu -10 137 1 7 791 4718 58 4 19 chr9 27038752 27039357 -97036815 - L1_Mus1 LINE L1 -9 5874 5271 7 791 4881 47 0 0 chr9 27039357 27039932 -97036240 + L1_Mus1 LINE L1 5993 6567 0 7 791 992 132 13 0 chr9 27039946 27040097 -97036075 + URR1B DNA MER1_type 73 225 0 7 791 204 67 0 0 chr9 27040640 27040670 -97035502 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 791 189 0 0 0 chr9 27040779 27040800 -97035372 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 7 791 313 302 69 35 chr9 27040803 27040947 -97035225 - MIRm SINE MIR -99 177 29 8 791 1732 220 30 13 chr9 27042304 27042677 -97033495 + MTE2a LTR MaLR 1 379 0 8 791 3445 28 5 0 chr9 27042722 27043116 -97033056 + MTA_Mm LTR MaLR 1 396 0 8 791 789 67 0 0 chr9 27043130 27043234 -97032938 + (TTTTC)n Simple_repeat Simple_repeat 2 105 0 8 791 1434 45 16 33 chr9 27043234 27043417 -97032755 - B2_Mm2 SINE B2 -14 181 2 8 791 449 212 13 93 chr9 27044075 27044181 -97031991 + RLTR15 LTR ERVK 1 100 -259 8 791 264 59 0 0 chr9 27044181 27044215 -97031957 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 791 449 212 13 93 chr9 27044215 27044259 -97031913 + RLTR15 LTR ERVK 101 139 -220 8 791 201 94 0 0 chr9 27044259 27044291 -97031881 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 8 791 568 295 36 63 chr9 27044291 27044544 -97031628 + RLTR15 LTR ERVK 78 323 -36 8 791 2430 209 168 92 chr9 27044753 27045553 -97030619 - RMER13A LTR ERVK 0 860 1 8 791 284 279 22 34 chr9 27045559 27045648 -97030524 + MTE2b LTR MaLR 278 365 -14 9 791 887 261 19 0 chr9 27047745 27047960 -97028212 + ID_B1 SINE B4 1 219 -5 9 791 189 147 0 0 chr9 27047998 27048032 -97028140 + (GGAGAA)n Simple_repeat Simple_repeat 1 34 0 9 791 283 319 84 33 chr9 27049735 27050068 -97026104 - L2a LINE L2 -42 3345 2996 9 791 210 143 0 0 chr9 27050444 27050479 -97025693 + (T)n Simple_repeat Simple_repeat 1 35 0 9 791 707 242 6 67 chr9 27050851 27051015 -97025157 + ID_B1 SINE B4 71 224 0 9 791 411 178 30 0 chr9 27051229 27051330 -97024842 + CT-rich Low_complexity Low_complexity 2 105 0 9 791 235 319 58 0 chr9 27051331 27051400 -97024772 - ID4 SINE ID -9 74 2 9 791 594 291 13 13 chr9 27051438 27051591 -97024581 - RSINE1 SINE B4 -6 159 7 9 791 252 221 273 9 chr9 27051644 27051751 -97024421 + LTR40b LTR ERVL 43 178 -284 9 791 347 292 17 58 chr9 27051880 27052000 -97024172 + LTR40b LTR ERVL 347 461 -1 9 791 414 208 61 115 chr9 27052054 27052315 -97023857 - Lx7 LINE L1 -8 7688 7442 1 791 6477 197 67 8 chr9 27052683 27053650 -97022522 + Lx5 LINE L1 953 2002 -3881 1 791 477 0 0 0 chr9 27053650 27053703 -97022469 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 791 459 0 0 0 chr9 27053703 27053753 -97022419 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 791 11900 125 380 15 chr9 27053753 27056024 -97020148 + Lx5 LINE L1 2003 5362 -515 1 791 1175 41 0 58 chr9 27056024 27056162 -97020010 + B1_Mus1 SINE Alu 2 136 -12 1 791 217 0 61 0 chr9 27056162 27056195 -97019977 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 791 1175 41 0 58 chr9 27056195 27056211 -97019961 + B1_Mus1 SINE Alu 137 147 -1 1 791 11900 145 191 21 chr9 27056211 27057324 -97018848 + Lx5 LINE L1 5363 6466 -584 1 791 204 67 0 0 chr9 27057324 27057354 -97018818 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 791 934 52 0 0 chr9 27057355 27057470 -97018702 - B1_Mm SINE Alu -4 143 29 1 791 2979 163 5 64 chr9 27057470 27058065 -97018107 + Lx5 LINE L1 6492 7051 -7 1 791 739 234 29 0 chr9 27058078 27058249 -97017923 - Lx7 LINE L1 -318 7378 7203 1 791 447 325 0 58 chr9 27058618 27058791 -97017381 + RSINE1 SINE B4 3 165 0 1 791 875 224 32 11 chr9 27059038 27059223 -97016949 - B3 SINE B2 -27 189 1 1 791 718 299 135 11 chr9 27059338 27059461 -97016711 + MER2 DNA MER2_type 30 179 -166 1 791 351 0 0 0 chr9 27059461 27059500 -97016672 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 791 718 299 135 11 chr9 27059500 27059657 -97016515 + MER2 DNA MER2_type 180 344 -1 1 791 327 284 0 0 chr9 27060171 27060238 -97015934 + ID4_ SINE ID 1 67 -16 1 791 880 244 283 3 chr9 27060510 27060835 -97015337 + MTD LTR MaLR 1 416 -3 1 791 230 302 90 101 chr9 27061501 27061911 -97014261 - L2b LINE L2 -61 3365 2931 1 791 401 286 0 63 chr9 27061957 27062084 -97014088 - MER20B DNA MER1_type -620 163 45 1 791 325 113 34 0 chr9 27062123 27062182 -97013990 - MLT2B4 LTR ERVL 0 567 509 1 791 435 19 0 0 chr9 27062186 27062238 -97013934 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 791 327 259 156 9 chr9 27062243 27062352 -97013820 + Tigger5 DNA MER2_type 21 145 -2261 1 791 414 0 0 0 chr9 27062515 27062561 -97013611 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 791 810 288 121 25 chr9 27062627 27062908 -97013264 - MLT2B4 LTR ERVL -196 360 53 1 791 399 56 0 0 chr9 27062954 27063008 -97013164 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 791 580 269 8 0 chr9 27063010 27063129 -97013043 - RSINE1 SINE B4 -20 145 26 1 791 3111 56 8 15 chr9 27063350 27063749 -97012423 - MTA_Mm LTR MaLR 0 396 1 1 791 521 217 38 0 chr9 27064837 27064943 -97011229 + PB1D10 SINE Alu 5 114 -3 1 791 294 29 0 0 chr9 27065687 27065722 -97010450 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 1 791 963 158 0 0 chr9 27065723 27065869 -97010303 - B1_Mur4 SINE Alu -2 148 3 1 791 248 208 62 10 chr9 27065947 27066044 -97010128 - L1MA9 LINE L1 -14 6298 6197 1 791 290 357 57 83 chr9 27066327 27066556 -97009616 - MLT2B1 LTR ERVL -252 268 46 1 791 291 244 0 0 chr9 27066849 27066939 -97009233 + (TTG)n Simple_repeat Simple_repeat 1 90 0 1 791 757 210 35 0 chr9 27066939 27067082 -97009090 - B1_Mur1 SINE Alu 0 149 2 1 791 415 241 110 9 chr9 27067560 27067669 -97008503 + RSINE1 SINE B4 1 120 -45 1 791 396 0 0 0 chr9 27067671 27067715 -97008457 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 791 723 184 0 0 chr9 27067725 27067866 -97008306 + GA-rich Low_complexity Low_complexity 1 141 0 1 791 453 161 0 0 chr9 27067882 27067969 -97008203 + GA-rich Low_complexity Low_complexity 2 88 0 1 791 252 354 0 12 chr9 27068617 27068719 -97007453 + CT-rich Low_complexity Low_complexity 1 100 0 1 791 303 28 0 0 chr9 27068731 27068767 -97007405 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 791 324 64 0 0 chr9 27068767 27068814 -97007358 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 791 217 213 95 32 chr9 27068996 27069059 -97007113 - RSINE1 SINE B4 -75 90 24 1 791 2163 208 102 6 chr9 27070199 27070668 -97005504 + Lx5 LINE L1 6534 7047 -3 1 791 661 284 205 0 chr9 27071217 27071391 -97004781 + B4A SINE B4 1 223 -69 1 791 351 0 0 0 chr9 27071391 27071430 -97004742 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 791 661 284 205 0 chr9 27071430 27071494 -97004678 + B4A SINE B4 224 287 -5 1 791 363 200 185 0 chr9 27071581 27071661 -97004511 - PB1D10 SINE Alu -52 97 2 1 791 247 244 103 0 chr9 27071592 27071670 -97004502 - MT2B LTR ERVL -360 241 156 1 791 377 314 165 23 chr9 27071917 27072135 -97004037 - RMER15 LTR ERVL -54 521 273 1 791 231 36 0 0 chr9 27072159 27072187 -97003985 + (TGGG)n Simple_repeat Simple_repeat 1 28 0 1 791 372 172 0 0 chr9 27073045 27073132 -97003040 + CT-rich Low_complexity Low_complexity 1 87 0 1 791 516 335 101 22 chr9 27073552 27073909 -97002263 + L2a LINE L2 3041 3425 -1 1 791 346 265 20 0 chr9 27074068 27074181 -97001991 + L1MC3 LINE L1 5878 5992 -367 1 791 812 188 142 33 chr9 27074377 27074662 -97001510 + L1MA4 LINE L1 5328 5704 -596 1 791 218 206 16 0 chr9 27074898 27074961 -97001211 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 1 791 350 294 6 53 chr9 27074965 27075134 -97001038 + L1MA4 LINE L1 5776 5936 -364 1 791 425 360 52 49 chr9 27076003 27076348 -96999824 - ORR1D2 LTR MaLR -1 369 24 1 791 1313 189 132 43 chr9 27076861 27077209 -96998963 - MTEb LTR MaLR 0 379 1 1 791 369 279 36 63 chr9 27077814 27077925 -96998247 + PB1D10 SINE Alu 7 114 -3 1 791 1838 203 27 29 chr9 27078120 27078495 -96997677 - ORR1D1 LTR MaLR 0 374 1 1 791 22 0 0 0 chr9 27078643 27078665 -96997507 + AT_rich Low_complexity Low_complexity 1 22 0 1 791 1308 193 181 16 chr9 27078768 27079089 -96997083 - ORR1D1 LTR MaLR 0 374 1 1 791 362 236 94 76 chr9 27079758 27079919 -96996253 + MamGypLTR1b LTR Gypsy 74 240 -563 1 791 319 345 99 20 chr9 27079998 27080149 -96996023 + L2a LINE L2 3041 3203 -223 1 791 463 291 99 37 chr9 27080201 27080449 -96995723 - MLT2D LTR ERVL -70 394 142 1 791 523 310 70 62 chr9 27080500 27080772 -96995400 - B4A SINE B4 -14 278 5 1 791 520 285 14 0 chr9 27080965 27081109 -96995063 + MLT2D LTR ERVL 5 150 -264 1 791 617 50 0 36 chr9 27081174 27081257 -96994915 + B2_Mm2 SINE B2 2 81 -114 1 791 286 223 91 50 chr9 27081257 27081273 -96994899 + B4A SINE B4 2 104 -188 1 791 186 43 0 0 chr9 27081280 27081303 -96994869 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1 791 515 323 64 92 chr9 27081305 27081632 -96994540 - ORR1E LTR MaLR -41 318 1 1 791 596 252 0 22 chr9 27081680 27081818 -96994354 + B1_Mur2 SINE Alu 1 135 -14 1 791 405 167 0 0 chr9 27081835 27081937 -96994235 + GA-rich Low_complexity Low_complexity 2 103 0 1 791 442 272 39 0 chr9 27081944 27082047 -96994125 + MLT2D LTR ERVL 393 499 -61 1 791 236 191 0 0 chr9 27082047 27082089 -96994083 + (CAAT)n Simple_repeat Simple_repeat 3 44 0 1 791 352 59 20 0 chr9 27082100 27082151 -96994021 + B1_Mus2 SINE Alu 96 147 0 1 791 212 261 0 0 chr9 27082153 27082199 -96993973 + CT-rich Low_complexity Low_complexity 4 49 0 1 791 911 177 0 0 chr9 27082542 27082683 -96993489 - B1_Mus1 SINE Alu -7 141 1 1 791 365 363 24 0 chr9 27082771 27082895 -96993277 - MLT1F LTR MaLR -240 308 182 1 791 362 316 104 9 chr9 27083720 27083835 -96992337 - B1F SINE Alu -21 128 3 1 791 274 256 63 13 chr9 27086137 27086216 -96989956 + ID4_ SINE ID 1 83 0 1 791 730 332 122 15 chr9 27086758 27087152 -96989020 + LTR16A1 LTR ERVL 21 456 0 1 791 4751 35 2 0 chr9 27087191 27087740 -96988432 - L1Md_F2 LINE L1 -2 6580 6031 1 791 529 285 7 20 chr9 27087741 27087888 -96988284 + Tigger5 DNA MER2_type 27 171 -2235 1 791 225 222 0 0 chr9 27087923 27087968 -96988204 + Tigger5 DNA MER2_type 2291 2335 -71 1 791 379 274 47 0 chr9 27087964 27088070 -96988102 - PB1D10 SINE Alu 0 117 7 1 791 254 346 28 19 chr9 27087983 27088089 -96988083 - ID_B1 SINE B4 -49 175 69 1 791 1467 50 0 0 chr9 27088101 27088323 -96987849 + (TTC)n Simple_repeat Simple_repeat 1 222 0 1 791 194 287 127 82 chr9 27088463 27088493 -96987679 + MIRm SINE MIR 157 271 -5 1 791 216 303 12 50 chr9 27088493 27088573 -96987599 + L2c LINE L2 3304 3380 -7 1 791 1012 155 166 0 chr9 27089448 27089641 -96986531 - URR1A DNA MER1_type -1 225 1 1 791 533 242 29 29 chr9 27090089 27090225 -96985947 + B3A SINE B2 7 142 -56 1 791 528 30 0 0 chr9 27090241 27090307 -96985865 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 791 266 356 9 28 chr9 27093512 27093619 -96982553 - MIRc SINE MIR -4 264 160 1 791 270 250 93 10 chr9 27093855 27093952 -96982220 - MIR SINE MIR -77 131 27 1 791 329 86 17 0 chr9 27094621 27094679 -96981493 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 791 632 148 8 0 chr9 27096420 27096542 -96979630 + CT-rich Low_complexity Low_complexity 3 125 0 1 791 543 31 0 0 chr9 27097431 27097496 -96978676 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 791 656 217 67 56 chr9 27098758 27098953 -96977219 - B3A SINE B2 -1 197 1 1 791 587 288 22 0 chr9 27098995 27099134 -96977038 + RSINE1 SINE B4 24 165 0 1 791 901 122 6 6 chr9 27100280 27100437 -96975735 + (TCC)n Simple_repeat Simple_repeat 3 159 0 1 791 494 31 16 0 chr9 27100438 27100502 -96975670 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 791 250 233 23 0 chr9 27101250 27101336 -96974836 + CT-rich Low_complexity Low_complexity 2 89 0 1 791 576 202 0 58 chr9 27101353 27101474 -96974698 - PB1D9 SINE Alu 0 120 7 1 791 941 306 150 48 chr9 27101663 27101704 -96974468 + MLT2B1 LTR ERVL 1 36 -484 1 791 1104 159 124 0 chr9 27101704 27101905 -96974267 - URR1A DNA MER1_type 0 226 1 1 791 941 306 150 48 chr9 27101905 27102323 -96973849 + MLT2B1 LTR ERVL 37 507 -13 1 791 515 314 137 5 chr9 27102473 27102684 -96973488 + MLT1G1 LTR MaLR 165 403 -176 1 791 225 284 32 54 chr9 27104014 27104107 -96972065 - MLT1A1 LTR MaLR 0 408 318 1 791 442 238 138 31 chr9 27104288 27104418 -96971754 - ID_B1 SINE B4 -1 223 80 1 791 929 160 5 89 chr9 27104525 27104738 -96971434 - B2_Mm2 SINE B2 0 195 1 2 791 198 71 0 0 chr9 27104771 27104799 -96971373 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 791 392 341 159 0 chr9 27104803 27104941 -96971231 - B3A SINE B2 -38 160 1 2 791 358 206 93 47 chr9 27104941 27105042 -96971130 - MLT1A1 LTR MaLR -301 107 2 1 791 200 288 0 64 chr9 27108291 27108369 -96967803 - MIR SINE MIR -80 182 110 2 791 335 318 21 4 chr9 27108853 27108981 -96967191 + MIRb SINE MIR 58 189 -87 2 791 251 147 456 0 chr9 27109590 27109658 -96966514 + B1_Mur3 SINE Alu 40 138 -11 2 791 369 93 0 0 chr9 27109671 27109725 -96966447 + (GGAGA)n Simple_repeat Simple_repeat 1 54 0 2 791 351 0 0 0 chr9 27113998 27114037 -96962135 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 791 450 0 0 0 chr9 27115320 27115370 -96960802 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 791 537 16 0 0 chr9 27115450 27115512 -96960660 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 791 249 57 0 0 chr9 27115514 27115549 -96960623 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 791 214 162 0 0 chr9 27117853 27117890 -96958282 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 791 205 197 0 32 chr9 27117999 27118062 -96958110 + CT-rich Low_complexity Low_complexity 4 64 0 2 791 244 284 37 12 chr9 27118165 27118247 -96957925 - PB1 SINE Alu -43 84 1 2 791 282 95 0 0 chr9 27118902 27118944 -96957228 + (TGGGGG)n Simple_repeat Simple_repeat 6 47 0 2 791 878 144 87 54 chr9 27120249 27120433 -96955739 - B2_Mm2 SINE B2 -4 191 2 2 791 274 256 76 65 chr9 27120437 27120448 -96955724 - BC1_Mm scRNA scRNA -59 93 85 2 791 225 0 0 0 chr9 27120448 27120473 -96955699 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 791 274 256 76 65 chr9 27120473 27120553 -96955619 - BC1_Mm scRNA scRNA -68 84 1 2 791 549 0 0 0 chr9 27120853 27120914 -96955258 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 791 198 302 82 36 chr9 27122883 27122993 -96953179 - L2b LINE L2 0 3375 3261 2 791 4818 30 12 2 chr9 27123605 27124168 -96952004 - L1Md_F3 LINE L1 0 6584 6016 2 791 765 229 172 6 chr9 27125922 27126102 -96950070 - B3 SINE B2 -6 210 1 2 791 573 61 0 0 chr9 27128879 27128961 -96947211 + (GA)n Simple_repeat Simple_repeat 1 82 0 2 792 957 118 0 0 chr9 27133060 27133238 -96942934 + (TTC)n Simple_repeat Simple_repeat 3 180 0 2 792 793 182 3 17 chr9 27133238 27133571 -96942601 + CT-rich Low_complexity Low_complexity 1 328 0 2 792 544 262 0 51 chr9 27135064 27135201 -96940971 - B1_Mur1 SINE Alu -17 132 3 2 792 21 0 0 0 chr9 27136299 27136320 -96939852 + AT_rich Low_complexity Low_complexity 1 21 0 2 792 181 315 21 32 chr9 27138858 27138953 -96937219 + MIRb SINE MIR 123 216 -52 2 792 307 215 129 24 chr9 27139537 27139661 -96936511 - Lx8 LINE L1 -2 7471 7335 2 792 243 103 0 0 chr9 27139664 27139703 -96936469 + (CTA)n Simple_repeat Simple_repeat 3 41 0 2 792 409 270 0 39 chr9 27139706 27139810 -96936362 - PB1D10 SINE Alu -13 104 5 2 792 432 0 0 0 chr9 27139998 27140046 -96936126 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 792 24 0 0 0 chr9 27144274 27144298 -96931874 + AT_rich Low_complexity Low_complexity 1 24 0 2 792 864 242 306 11 chr9 27146243 27146535 -96929637 - MTC LTR MaLR 0 419 42 2 792 333 0 0 0 chr9 27148869 27148906 -96927266 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 792 459 312 58 0 chr9 27151088 27151226 -96924946 - B1F1 SINE Alu -2 147 2 2 792 222 37 0 0 chr9 27151298 27151325 -96924847 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2 792 287 281 0 119 chr9 27152107 27152208 -96923964 - PB1 SINE Alu 0 127 39 2 792 282 182 0 0 chr9 27152404 27152470 -96923702 + CT-rich Low_complexity Low_complexity 3 68 0 2 792 316 330 19 9 chr9 27152470 27152577 -96923595 - PB1D10 SINE Alu 0 117 10 2 792 300 27 0 0 chr9 27156573 27156610 -96919562 + (T)n Simple_repeat Simple_repeat 1 37 0 2 792 1371 135 179 63 chr9 27156913 27157260 -96918912 - L1_Mus4 LINE L1 0 6636 6250 2 792 333 187 9 53 chr9 27159849 27159962 -96916210 + (TG)n Simple_repeat Simple_repeat 1 108 0 2 792 27 0 0 0 chr9 27160103 27160130 -96916042 + AT_rich Low_complexity Low_complexity 1 27 0 2 792 185 83 0 27 chr9 27160319 27160356 -96915816 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 2 792 213 62 41 20 chr9 27160538 27160587 -96915585 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 2 792 228 35 0 0 chr9 27161546 27161575 -96914597 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 792 356 103 17 0 chr9 27163663 27163721 -96912451 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 792 180 219 0 0 chr9 27164215 27164256 -96911916 + (CGTG)n Simple_repeat Simple_repeat 1 41 0 2 792 311 235 15 0 chr9 27165867 27165935 -96910237 - PB1D10 SINE Alu 0 117 49 2 792 883 223 22 50 chr9 27166581 27166803 -96909369 - B3 SINE B2 0 216 1 2 792 474 18 0 0 chr9 27168504 27168559 -96907613 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 792 464 241 31 19 chr9 27169320 27169464 -96906708 - MTD LTR MaLR -14 405 219 2 792 1414 244 16 55 chr9 27169475 27169761 -96906411 - ORR1D2 LTR MaLR 0 370 94 2 792 2178 121 12 0 chr9 27169761 27170084 -96906088 + ORR1A2 LTR MaLR 1 327 0 2 792 1414 244 16 55 chr9 27170084 27170178 -96905994 - ORR1D2 LTR MaLR -277 93 5 2 792 818 291 41 27 chr9 27170193 27170486 -96905686 - MTD LTR MaLR -122 297 1 2 792 461 258 206 12 chr9 27170635 27170800 -96905372 - B4 SINE B4 -6 286 90 2 792 453 257 9 17 chr9 27170833 27170948 -96905224 + PB1D10 SINE Alu 1 114 -3 2 792 468 51 0 0 chr9 27170967 27171026 -96905146 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 792 1380 86 38 0 chr9 27171400 27171586 -96904586 + B2_Mm2 SINE B2 1 193 -2 2 792 1033 67 26 20 chr9 27171729 27172032 -96904140 + (TCTA)n Simple_repeat Simple_repeat 1 304 0 2 792 860 231 22 0 chr9 27172037 27172219 -96903953 - B3 SINE B2 -30 186 1 2 792 262 283 12 22 chr9 27172220 27172329 -96903843 - PB1D10 SINE Alu 0 120 8 2 792 1173 192 5 0 chr9 27172830 27173043 -96903129 - B3 SINE B2 0 216 3 2 792 1239 261 47 25 chr9 27174494 27174856 -96901316 - MTE2b LTR MaLR -2 377 8 2 792 572 213 177 0 chr9 27175771 27175912 -96900260 - ID_B1 SINE B4 -7 217 52 2 792 1679 225 71 120 chr9 27176932 27177429 -96898743 + RMER1C Other Other 758 1195 -147 2 792 645 25 0 0 chr9 27177429 27177508 -96898664 + (TTTA)n Simple_repeat Simple_repeat 4 82 0 2 792 1679 225 71 120 chr9 27177508 27177586 -96898586 + RMER1C Other Other 1196 1304 -38 2 792 216 86 0 0 chr9 27177589 27177624 -96898548 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2 792 477 171 53 26 chr9 27177627 27177741 -96898431 + RMER1C Other Other 1226 1342 0 2 792 1319 281 61 23 chr9 27177742 27178187 -96897985 + Lx8 LINE L1 6550 7019 -677 2 792 2004 113 16 92 chr9 27178501 27178880 -96897292 - ORR1B1 LTR MaLR -3 391 42 2 792 221 284 11 33 chr9 27178915 27179006 -96897166 + G-rich Low_complexity Low_complexity 5 93 0 2 792 2087 126 72 20 chr9 27179061 27179410 -96896762 - ORR1B2 LTR MaLR 0 367 1 2 792 520 265 157 0 chr9 27179450 27179654 -96896518 + MER2 DNA MER2_type 75 310 -35 2 792 226 194 29 101 chr9 27179693 27179762 -96896410 + L1MDa LINE L1 1861 1924 -4709 2 792 991 249 125 3 chr9 27179795 27180125 -96896047 - MTE2a LTR MaLR -1 373 8 2 792 1181 290 48 140 chr9 27180129 27180814 -96895358 - MTE2a-int LTR MaLR -1 1579 958 2 792 360 326 83 0 chr9 27180906 27181050 -96895122 - MTE2a-int LTR MaLR -883 697 542 2 792 1334 298 75 47 chr9 27181132 27181921 -96894251 + L1M3 LINE L1 3067 3877 -2263 2 792 244 276 92 65 chr9 27181973 27182267 -96893905 - L1M4 LINE L1 -2758 3388 3087 2 792 554 276 6 44 chr9 27182280 27182433 -96893739 + ID_B1 SINE B4 24 170 -54 2 792 1897 142 25 160 chr9 27182433 27182920 -96893252 - RLTR23 LTR ERV1 0 430 10 2 792 247 132 36 36 chr9 27182937 27182992 -96893180 + ID_B1 SINE B4 170 224 0 2 792 252 192 96 0 chr9 27183012 27183085 -96893087 - L1M4 LINE L1 -3072 3074 2995 2 792 386 85 17 0 chr9 27183091 27183150 -96893022 + (TCC)n Simple_repeat Simple_repeat 2 61 0 2 792 269 170 71 41 chr9 27183296 27183394 -96892778 - L1M4 LINE L1 -3277 2869 2769 2 792 1304 155 140 158 chr9 27183426 27183855 -96892317 + RLTR23 LTR ERV1 10 430 0 2 792 302 344 31 12 chr9 27183916 27183957 -96892215 + RLTR6-int LTR ERV1 5557 5668 -2110 2 792 363 308 0 0 chr9 27183957 27184061 -96892111 + RLTR19-int LTR ERVK 4376 4479 -1658 2 792 302 344 31 12 chr9 27184061 27184078 -96892094 + RLTR6-int LTR ERV1 5669 5721 -2057 2 792 4097 203 38 8 chr9 27184228 27185011 -96891161 - Lx5 LINE L1 0 7050 6244 2 792 2283 4 0 0 chr9 27185067 27185318 -96890854 - L1Md_T LINE L1 0 6582 6332 2 792 2583 21 0 0 chr9 27185318 27185603 -96890569 + L1Md_T LINE L1 6070 6354 -228 2 792 528 243 55 41 chr9 27185594 27185813 -96890359 - Lx5 LINE L1 -795 6255 6034 2 792 1369 182 0 0 chr9 27185811 27186047 -96890125 + Lx5 LINE L1 5804 6039 -1011 2 792 281 276 230 52 chr9 27186074 27186265 -96889907 + MLT1E1A LTR MaLR 456 680 0 2 792 209 128 26 0 chr9 27186338 27186377 -96889795 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 792 968 114 14 7 chr9 27187085 27187226 -96888946 + B1_Mur4 SINE Alu 3 144 -6 2 792 994 111 0 7 chr9 27187237 27187373 -96888799 + B1_Mus1 SINE Alu 2 136 -12 2 792 243 0 0 0 chr9 27187374 27187401 -96888771 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 792 378 0 0 0 chr9 27187449 27187491 -96888681 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 2 792 554 262 25 130 chr9 27188300 27188624 -96887548 + B4A SINE B4 3 292 0 2 792 259 95 0 60 chr9 27188629 27188696 -96887476 + (CAGAGA)n Simple_repeat Simple_repeat 6 68 0 2 792 627 347 29 39 chr9 27188827 27189136 -96887036 - MLT1E2 LTR MaLR -105 522 217 2 792 498 227 0 10 chr9 27189261 27189359 -96886813 - B4 SINE B4 -140 152 56 2 792 296 307 11 0 chr9 27189391 27189479 -96886693 - MLT1E2 LTR MaLR -498 129 41 2 792 26 30 0 0 chr9 27189777 27189810 -96886362 + AT_rich Low_complexity Low_complexity 1 33 0 2 792 418 241 131 36 chr9 27191924 27191956 -96884216 - B2_Mm1t SINE B2 0 193 157 2 792 350 74 19 0 chr9 27191956 27192010 -96884162 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 792 668 199 21 6 chr9 27192010 27192147 -96884025 - B3 SINE B2 -37 156 8 2 792 1017 179 0 0 chr9 27192186 27192422 -96883750 + CT-rich Low_complexity Low_complexity 1 236 0 3 792 865 266 79 57 chr9 27192975 27193516 -96882656 + L1MA4 LINE L1 5587 6105 -1539 3 792 233 248 64 45 chr9 27193628 27193738 -96882434 - L1M4 LINE L1 -3360 2786 2675 3 792 682 288 75 32 chr9 27194997 27195424 -96880748 + L1M4 LINE L1 4988 5426 -738 3 792 676 280 44 48 chr9 27195643 27195913 -96880259 + B4A SINE B4 2 270 -22 3 792 447 92 0 0 chr9 27195941 27196006 -96880166 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 792 306 231 99 36 chr9 27196051 27196242 -96879930 + L1MB8 LINE L1 3599 3813 -2333 3 792 370 240 48 96 chr9 27196247 27196413 -96879759 + L1MB8 LINE L1 3769 3926 -2220 3 792 243 0 0 0 chr9 27196417 27196444 -96879728 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 792 290 193 0 17 chr9 27196466 27196524 -96879648 - ID_B1 SINE B4 0 224 168 3 792 2251 316 74 31 chr9 27196692 27197719 -96878453 - Lx8 LINE L1 -146 7327 6257 3 792 252 0 0 0 chr9 27198561 27198589 -96877583 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 792 423 0 0 0 chr9 27198600 27198647 -96877525 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 792 3644 269 32 21 chr9 27198648 27199606 -96876566 - Lx7 LINE L1 -388 7308 6340 3 792 459 107 0 0 chr9 27199608 27199683 -96876489 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 792 237 294 127 9 chr9 27199720 27199743 -96876429 - ID_B1 SINE B4 -7 217 195 3 792 315 0 0 0 chr9 27199743 27199778 -96876394 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 792 344 183 207 0 chr9 27199782 27199864 -96876308 - B1_Mur1 SINE Alu -37 112 14 3 792 1078 244 102 88 chr9 27199945 27200263 -96875909 + L1MB8 LINE L1 3991 4329 -1817 3 792 589 264 66 52 chr9 27200263 27200551 -96875621 + B4A SINE B4 1 292 0 3 792 1078 244 102 88 chr9 27200551 27200576 -96875596 + L1MB8 LINE L1 4330 4332 -1814 3 792 261 0 0 0 chr9 27200576 27200605 -96875567 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 792 1078 244 102 88 chr9 27200605 27200894 -96875278 + L1MB8 LINE L1 4333 4633 -1513 3 792 2888 38 3 0 chr9 27200897 27201264 -96874908 - MTA_Mm LTR MaLR 0 396 29 3 792 563 252 0 0 chr9 27201298 27201409 -96874763 - PB1D10 SINE Alu -6 111 1 3 792 271 283 60 26 chr9 27201418 27201534 -96874638 - L1M4 LINE L1 -2409 3737 3618 3 792 980 282 144 15 chr9 27201570 27201799 -96874373 + L1MB8 LINE L1 4741 5001 -1145 3 792 237 33 0 0 chr9 27201799 27201829 -96874343 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 3 792 2143 276 72 50 chr9 27201829 27202979 -96873193 + L1MB8 LINE L1 5002 6174 -4 3 792 254 246 18 0 chr9 27202985 27203042 -96873130 + ID4 SINE ID 2 59 -24 3 792 239 0 32 0 chr9 27203060 27203091 -96873081 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 792 672 223 4 4 chr9 27203093 27203608 -96872564 + (CA)n Simple_repeat Simple_repeat 1 515 0 3 792 903 129 0 0 chr9 27203664 27203842 -96872330 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 792 371 98 16 0 chr9 27205123 27205184 -96870988 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 792 240 86 0 0 chr9 27206137 27206172 -96870000 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 792 1052 154 124 0 chr9 27207214 27207415 -96868757 - URR1A DNA MER1_type 0 226 1 3 792 210 238 0 0 chr9 27208929 27208971 -96867201 - MIRb SINE MIR -9 259 218 3 792 694 158 0 37 chr9 27209324 27209544 -96866628 + CT-rich Low_complexity Low_complexity 1 211 0 3 792 970 134 6 22 chr9 27209546 27209729 -96866443 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 3 792 556 261 170 6 chr9 27209927 27210239 -96865933 - L1MCa LINE L1 -4689 2062 1700 3 792 630 286 10 7 chr9 27210446 27210664 -96865508 - L1MA4A LINE L1 -362 5938 5723 3 792 305 313 133 39 chr9 27210640 27210896 -96865276 - L1MCa LINE L1 -5049 1702 1423 3 792 306 242 0 0 chr9 27210956 27211022 -96865150 - tRNA-Ala-GCY_ tRNA tRNA -7 68 3 3 792 362 312 58 7 chr9 27211079 27211218 -96864954 - B4A SINE B4 -145 147 2 3 792 918 275 55 30 chr9 27211238 27211648 -96864524 - L1MCa LINE L1 -5394 1357 847 3 792 381 245 34 27 chr9 27211955 27212102 -96864070 + CT-rich Low_complexity Low_complexity 6 153 0 3 792 535 257 23 15 chr9 27212343 27212490 -96863682 - ID_B1 SINE B4 -3 221 78 3 792 1766 142 85 9 chr9 27212636 27212976 -96863196 - ORR1C1 LTR MaLR 0 378 13 3 792 8236 148 34 11 chr9 27212987 27215443 -96860729 - Lx5 LINE L1 -3 7047 4528 3 792 282 314 0 0 chr9 27215578 27215664 -96860508 - MIRc SINE MIR -110 158 73 3 792 22 0 0 0 chr9 27215793 27215815 -96860357 + AT_rich Low_complexity Low_complexity 1 22 0 3 792 405 150 0 0 chr9 27217109 27217209 -96858963 + (GGA)n Simple_repeat Simple_repeat 3 102 0 3 792 2039 100 127 9 chr9 27219113 27219436 -96856736 + ORR1B2 LTR MaLR 5 365 -2 3 792 342 0 0 0 chr9 27220309 27220347 -96855825 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 792 327 104 0 0 chr9 27220559 27220607 -96855565 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 792 3142 69 5 24 chr9 27221105 27221519 -96854653 + MTB_Mm LTR MaLR 2 407 0 3 792 261 0 0 0 chr9 27222556 27222585 -96853587 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 792 234 0 0 0 chr9 27223189 27223215 -96852957 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 792 192 27 81 0 chr9 27227047 27227084 -96849088 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 3 792 249 333 0 54 chr9 27227189 27227300 -96848872 + RSINE1 SINE B4 27 131 -34 3 792 264 240 8 16 chr9 27227369 27227449 -96848723 + PB1D10 SINE Alu 41 147 -2 3 792 278 303 0 0 chr9 27227451 27227517 -96848655 + ID4 SINE ID 4 69 -14 3 792 215 255 9 0 chr9 27227862 27227968 -96848204 + (CCCTAA)n Simple_repeat Simple_repeat 5 111 0 3 792 472 227 11 0 chr9 27227983 27228159 -96848013 + (CCCTAA)n Simple_repeat Simple_repeat 3 180 0 3 792 4846 59 2 2 chr9 27230124 27230719 -96845453 + L1_Mus2 LINE L1 5972 6566 0 3 792 212 250 0 0 chr9 27230782 27230830 -96845342 + MIRc SINE MIR 120 167 -101 3 792 308 287 97 19 chr9 27232233 27232336 -96843836 - MLT1C LTR MaLR -68 380 270 3 792 317 292 78 0 chr9 27232544 27232698 -96843474 - Tigger7 DNA MER2_type -55 2436 2271 3 792 275 288 28 35 chr9 27233325 27233469 -96842703 - MLT1C-int LTR MaLR -633 754 612 3 792 456 315 134 33 chr9 27233593 27233898 -96842274 - MLT1C LTR MaLR -81 386 51 3 792 265 296 9 36 chr9 27233896 27234008 -96842164 - MLT1C-int LTR MaLR -867 520 412 3 792 256 219 41 0 chr9 27234246 27234319 -96841853 + L2a LINE L2 3100 3175 -251 3 792 647 227 13 0 chr9 27235860 27236010 -96840162 + B3A SINE B2 1 152 -46 3 792 465 19 0 0 chr9 27236022 27236076 -96840096 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 792 575 281 90 14 chr9 27237170 27237373 -96838799 + B3A SINE B2 1 205 -11 3 792 235 176 44 56 chr9 27237374 27237464 -96838708 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 3 792 414 0 0 0 chr9 27237481 27237527 -96838645 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 792 273 313 95 9 chr9 27238085 27238201 -96837971 - Tigger7 DNA MER2_type 0 2491 2366 3 792 294 231 134 17 chr9 27238209 27238328 -96837844 - Tigger7 DNA MER2_type -179 2312 2180 3 792 3065 75 27 5 chr9 27238355 27238768 -96837404 + BGLII_Mus LTR ERVK 1 422 0 3 792 524 56 0 14 chr9 27238905 27238978 -96837194 + (TCCC)n Simple_repeat Simple_repeat 1 72 0 3 792 663 276 0 0 chr9 27239003 27239148 -96837024 - B1_Mur4 SINE Alu 0 150 6 3 792 305 298 190 0 chr9 27239184 27239305 -96836867 - Tigger7 DNA MER2_type -2328 163 20 3 792 458 96 24 12 chr9 27239650 27239734 -96836438 + L1Md_F3 LINE L1 6495 6579 -5 3 792 242 336 55 27 chr9 27239941 27240051 -96836121 - MLT1F1 LTR MaLR -388 181 69 3 792 231 114 0 0 chr9 27240354 27240389 -96835783 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 3 792 596 38 13 0 chr9 27240433 27240512 -96835660 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 3 792 247 264 11 33 chr9 27240544 27240634 -96835538 + MLT1J2-int LTR MaLR 633 720 -667 3 792 255 304 10 19 chr9 27240635 27240739 -96835433 + MLT1J2 LTR MaLR 230 332 -116 3 792 243 277 89 0 chr9 27241258 27241359 -96834813 + L1ME4a LINE L1 5851 5960 -164 3 792 399 223 135 40 chr9 27241923 27242049 -96834123 - B1_Mur2 SINE Alu -5 144 7 3 792 207 0 0 0 chr9 27242903 27242926 -96833246 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 3 792 215 82 19 93 chr9 27244099 27244153 -96832019 + A-rich Low_complexity Low_complexity 2 51 0 3 792 429 109 0 0 chr9 27244480 27244544 -96831628 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 792 336 48 0 0 chr9 27245425 27245467 -96830705 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 792 258 32 0 0 chr9 27245993 27246024 -96830148 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 3 792 279 260 33 127 chr9 27246175 27246325 -96829847 + MLT1A1 LTR MaLR 78 213 -195 3 792 476 261 218 97 chr9 27247711 27248051 -96828121 - Lx8 LINE L1 -181 7292 6927 3 792 633 310 70 66 chr9 27248082 27248426 -96827746 - L1ME3B LINE L1 -292 5948 5612 3 792 767 217 0 0 chr9 27248426 27248569 -96827603 + B1_Mur1 SINE Alu 2 144 -5 3 792 201 39 0 0 chr9 27248570 27248596 -96827576 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 3 792 633 310 70 66 chr9 27248596 27248750 -96827422 - L1ME3B LINE L1 -629 5611 5446 3 792 562 295 119 21 chr9 27248945 27249139 -96827033 - B3A SINE B2 -3 213 1 3 792 282 312 0 12 chr9 27249293 27249374 -96826798 + ID4_ SINE ID 2 81 -2 3 792 206 32 32 0 chr9 27249378 27249409 -96826763 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 3 792 690 304 87 17 chr9 27249690 27250149 -96826023 - L1ME3B LINE L1 -1393 4753 4263 3 792 249 250 20 50 chr9 27250652 27250753 -96825419 - L1MA10 LINE L1 0 6334 6237 3 792 2309 200 93 13 chr9 27250753 27251279 -96824893 - RLTR20D LTR ERVK 0 568 1 3 792 258 132 0 0 chr9 27251396 27251449 -96824723 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 792 774 268 28 36 chr9 27251503 27251751 -96824421 - L1MB1 LINE L1 -116 6052 5807 3 792 540 330 62 48 chr9 27252174 27252464 -96823708 + MLT1I LTR MaLR 115 408 -3 3 792 1370 144 18 13 chr9 27253097 27253322 -96822850 + URR1A DNA MER1_type 1 226 0 3 792 247 325 17 42 chr9 27253383 27253502 -96822670 + MIRb SINE MIR 146 261 -1 3 792 354 291 19 0 chr9 27253540 27253643 -96822529 + Lx9 LINE L1 7388 7492 -152 3 792 204 158 0 0 chr9 27253645 27253683 -96822489 + (CATG)n Simple_repeat Simple_repeat 3 40 0 3 792 323 323 123 22 chr9 27254169 27254397 -96821775 + L1MEe LINE L1 1438 1688 -4478 3 792 1914 273 127 3 chr9 27254401 27255125 -96821047 + L1MEe LINE L1 4348 5161 -985 3 792 426 264 159 69 chr9 27255766 27256043 -96820129 + L2a LINE L2 3125 3426 0 3 792 777 295 171 35 chr9 27256779 27256963 -96819209 + MLT1E3 LTR MaLR 7 209 -415 3 792 258 125 0 0 chr9 27256963 27257011 -96819161 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 792 777 295 171 35 chr9 27257011 27257364 -96818808 + MLT1E3 LTR MaLR 210 617 -7 3 792 21 0 0 0 chr9 27257665 27257686 -96818486 + AT_rich Low_complexity Low_complexity 1 21 0 4 792 420 71 0 0 chr9 27258352 27258408 -96817764 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 792 258 293 100 33 chr9 27258577 27258697 -96817475 - L1M5 LINE L1 -628 5612 5485 4 792 270 324 134 7 chr9 27258752 27258901 -96817271 - MLT1E1A LTR MaLR -78 602 435 4 792 239 235 60 24 chr9 27259363 27259446 -96816726 - MIR SINE MIR -60 202 117 4 792 802 256 90 20 chr9 27260902 27261157 -96815015 + B4A SINE B4 4 276 -16 4 792 297 0 0 0 chr9 27262477 27262510 -96813662 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 4 792 369 253 0 0 chr9 27262515 27262594 -96813578 - PB1D7 SINE Alu -37 83 5 4 792 493 264 58 37 chr9 27262600 27262789 -96813383 - B3A SINE B2 -5 193 1 4 793 351 354 0 0 chr9 27262980 27263141 -96813031 - L1MA9 LINE L1 -292 6020 5860 4 793 250 275 183 0 chr9 27263165 27263307 -96812865 - L1MA9 LINE L1 -695 5596 5429 4 793 218 324 8 19 chr9 27264610 27264739 -96811433 + MIRc SINE MIR 73 200 -62 4 793 787 255 65 138 chr9 27264869 27265210 -96810962 - MTE2a LTR MaLR -55 324 9 4 793 239 278 31 62 chr9 27265237 27265333 -96810839 + Kanga11a DNA Tc2 876 968 -2 4 793 24 32 0 0 chr9 27265949 27265980 -96810192 + AT_rich Low_complexity Low_complexity 1 31 0 4 793 198 0 0 0 chr9 27266614 27266636 -96809536 + (T)n Simple_repeat Simple_repeat 1 22 0 4 793 234 91 0 0 chr9 27267352 27267385 -96808787 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 793 525 44 0 0 chr9 27267652 27267720 -96808452 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 793 252 0 0 0 chr9 27268004 27268032 -96808140 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 793 1374 84 10 20 chr9 27268216 27268411 -96807761 - B2_Mm1t SINE B2 0 193 1 4 793 236 306 16 47 chr9 27268411 27268538 -96807634 + MER5B DNA MER1_type 37 159 -19 4 793 207 139 0 0 chr9 27269257 27269293 -96806879 + (TCC)n Simple_repeat Simple_repeat 1 36 0 4 793 1654 179 53 15 chr9 27270057 27270397 -96805775 - ORR1B2 LTR MaLR 0 367 15 4 793 7616 161 50 13 chr9 27270411 27271893 -96804279 - Lx5 LINE L1 -13 7037 5486 4 793 245 315 21 11 chr9 27272241 27272334 -96803838 - MLT1B LTR MaLR -19 448 355 4 793 41791 9 0 6 chr9 27272542 27278743 -96797429 - L1Md_A LINE L1 -1 6581 422 4 793 265 340 0 0 chr9 27278743 27278837 -96797335 - MLT1B LTR MaLR -262 128 35 4 793 198 156 0 0 chr9 27278845 27278890 -96797282 + T-rich Low_complexity Low_complexity 2 46 0 4 793 429 20 0 0 chr9 27278890 27278940 -96797232 + (TCTCC)n Simple_repeat Simple_repeat 4 53 0 4 793 270 0 0 0 chr9 27278946 27278976 -96797196 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 4 793 22 0 0 0 chr9 27280351 27280373 -96795799 + AT_rich Low_complexity Low_complexity 1 22 0 4 793 954 71 0 0 chr9 27280420 27280547 -96795625 + (TTCTCC)n Simple_repeat Simple_repeat 1 127 0 4 793 1200 101 0 0 chr9 27280550 27280728 -96795444 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 793 521 150 0 10 chr9 27280733 27280834 -96795338 + CT-rich Low_complexity Low_complexity 6 105 0 4 793 274 374 58 35 chr9 27281168 27281340 -96794832 - MER5B DNA MER1_type 0 178 3 4 793 221 372 0 0 chr9 27281407 27281485 -96794687 + B3A SINE B2 2 79 -119 4 793 500 265 80 0 chr9 27281478 27281629 -96794543 - MER2 DNA MER2_type -108 237 75 4 793 859 298 65 15 chr9 27282269 27282668 -96793504 + L1ME4a LINE L1 5530 5948 -176 4 793 306 0 0 0 chr9 27283627 27283661 -96792511 + (A)n Simple_repeat Simple_repeat 1 34 0 4 793 216 67 0 0 chr9 27283790 27283820 -96792352 + (T)n Simple_repeat Simple_repeat 1 30 0 4 793 303 326 50 39 chr9 27285153 27285335 -96790837 + MER20 DNA MER1_type 29 212 -7 4 793 478 287 93 36 chr9 27285415 27285802 -96790370 - L1MDa LINE L1 -4357 2276 1868 4 793 255 315 43 0 chr9 27286280 27286372 -96789800 - MTE-int LTR MaLR -127 1453 1358 4 793 404 303 72 0 chr9 27286692 27286844 -96789328 - MLT1B LTR MaLR -31 359 197 4 793 834 269 82 140 chr9 27286859 27287105 -96789067 - L1MDa LINE L1 -4762 1871 1668 4 793 301 186 358 41 chr9 27287105 27287228 -96788944 - RSINE1 SINE B4 -1 164 3 4 793 834 269 82 140 chr9 27287228 27287868 -96788304 - L1MDa LINE L1 -4966 1667 1036 4 793 302 268 0 0 chr9 27287868 27287939 -96788233 - PB1D10 SINE Alu -5 112 42 4 793 240 281 171 44 chr9 27287962 27288167 -96788005 - L1MDa LINE L1 -5591 1042 812 4 793 2367 62 58 0 chr9 27288254 27288563 -96787609 - ORR1A2 LTR MaLR 0 327 1 4 793 23 0 0 0 chr9 27288979 27289002 -96787170 + AT_rich Low_complexity Low_complexity 1 23 0 4 793 8149 96 8 28 chr9 27289008 27289449 -96786723 - Lx3_Mus LINE L1 0 7009 6571 4 793 1173 75 0 0 chr9 27289449 27289595 -96786577 - B1_Mus2 SINE Alu 0 147 2 4 793 8149 96 8 28 chr9 27289595 27290347 -96785825 - Lx3_Mus LINE L1 -439 6570 5840 4 793 20942 73 18 6 chr9 27290347 27293135 -96783037 - L1_Mur1 LINE L1 -884 5002 2179 4 793 5604 93 5 65 chr9 27293135 27293990 -96782182 + RLTR13B4 LTR ERVK 1 803 0 4 793 20942 126 18 40 chr9 27293990 27294096 -96782076 - L1_Mur1 LINE L1 -3708 2178 2071 4 793 1180 57 6 0 chr9 27294096 27294255 -96781917 + B2_Mm1a SINE B2 1 160 -33 4 793 315 0 0 0 chr9 27294255 27294290 -96781882 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 793 18763 162 18 62 chr9 27294290 27294966 -96781206 - L1_Mur1 LINE L1 -3807 2070 1440 4 793 1147 62 7 0 chr9 27294966 27295112 -96781060 - B1_Mus1 SINE Alu -1 147 1 4 793 18763 143 117 21 chr9 27295112 27295929 -96780243 - L1_Mur1 LINE L1 -4438 1439 208 4 793 2710 129 37 19 chr9 27296104 27296616 -96779556 + Lx LINE L1 1545 2065 -3812 4 793 4577 149 15 3 chr9 27296677 27297432 -96778740 - RMER13B LTR ERVK -142 766 3 4 793 10275 191 276 28 chr9 27297434 27297536 -96778636 + Lx LINE L1 2070 2172 -3708 4 793 459 0 0 0 chr9 27297536 27297587 -96778585 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 793 10275 191 276 28 chr9 27297587 27298533 -96777639 + Lx LINE L1 2173 3078 -2802 4 793 1768 126 15 62 chr9 27298533 27298871 -96777301 + RLTRETN_Mm LTR ERVK 1 322 0 4 793 10275 206 203 47 chr9 27298871 27301662 -96774510 + Lx LINE L1 3079 7037 -21 4 793 198 0 0 0 chr9 27301662 27301684 -96774488 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 793 702 229 0 15 chr9 27301836 27301969 -96774203 + B1_Mur1 SINE Alu 18 148 -1 4 793 305 140 0 17 chr9 27302067 27302125 -96774047 + CT-rich Low_complexity Low_complexity 3 59 0 4 793 681 274 26 26 chr9 27302326 27302558 -96773614 - L1MCc LINE L1 -5060 1363 1132 4 793 882 174 0 0 chr9 27304743 27304892 -96771280 + B3A SINE B2 4 152 -46 4 793 423 0 0 0 chr9 27304894 27304941 -96771231 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 793 611 287 137 17 chr9 27305529 27305833 -96770339 - L1M4 LINE L1 -1180 4963 4624 4 793 657 38 0 0 chr9 27305973 27306053 -96770119 + (TCCCC)n Simple_repeat Simple_repeat 3 82 0 4 793 511 253 162 72 chr9 27308330 27308560 -96767612 + B4A SINE B4 24 278 -14 4 793 528 146 0 0 chr9 27308620 27308709 -96767463 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 793 924 143 0 0 chr9 27309173 27309327 -96766845 + (GGGA)n Simple_repeat Simple_repeat 4 157 0 4 793 271 298 8 26 chr9 27309399 27309516 -96766656 + GA-rich Low_complexity Low_complexity 4 118 0 4 793 999 218 76 36 chr9 27311662 27311991 -96764181 - RLTR15 LTR ERVK -17 342 1 4 793 226 179 43 87 chr9 27312114 27312206 -96763966 + GA-rich Low_complexity Low_complexity 1 88 0 4 793 180 0 0 0 chr9 27312306 27312326 -96763846 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 793 3841 233 46 60 chr9 27312389 27312505 -96763667 - L1_Rod LINE L1 -2264 3583 3490 4 793 802 194 193 6 chr9 27312505 27312686 -96763486 - B3 SINE B2 -1 215 1 4 793 3841 233 46 60 chr9 27312686 27313835 -96762337 - L1_Rod LINE L1 -2358 3489 2336 4 793 204 40 0 0 chr9 27313945 27313970 -96762202 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 4 793 9080 49 6 1 chr9 27314019 27315917 -96760255 - L1Md_F3 LINE L1 0 6584 4776 4 793 430 224 0 23 chr9 27315940 27316068 -96760104 + CT-rich Low_complexity Low_complexity 3 127 0 4 793 327 291 0 0 chr9 27316070 27316149 -96760023 - B4A SINE B4 -213 79 1 4 793 305 218 38 13 chr9 27316170 27316249 -96759923 - ID4 SINE ID 0 83 3 4 793 612 27 0 0 chr9 27317112 27317186 -96758986 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 793 808 202 71 22 chr9 27317749 27317931 -96758241 - Ricksha_c DNA MuDR -1143 905 715 4 793 1043 279 101 11 chr9 27317935 27318301 -96757871 - MTD LTR MaLR -20 399 1 4 793 281 264 105 24 chr9 27319740 27319864 -96756308 - MLT1A1 LTR MaLR -5 403 270 4 793 248 288 0 0 chr9 27320010 27320090 -96756082 - ID2 SINE ID -3 80 1 4 793 255 317 39 10 chr9 27320147 27320249 -96755923 + MLT1A1 LTR MaLR 284 388 -20 4 793 594 199 13 4 chr9 27321286 27321524 -96754648 + (TG)n Simple_repeat Simple_repeat 1 240 0 4 793 334 291 96 32 chr9 27321947 27322135 -96754037 - MLT1I LTR MaLR -9 402 203 4 793 1604 250 123 39 chr9 27322206 27322642 -96753530 - L1MA8 LINE L1 -3 6288 5799 4 793 1455 89 0 0 chr9 27322642 27322822 -96753350 + (TCTA)n Simple_repeat Simple_repeat 1 183 -183 4 793 1455 89 0 0 chr9 27322830 27323008 -96753164 + (TCTA)n Simple_repeat Simple_repeat 184 366 0 4 793 1604 250 123 39 chr9 27323008 27323260 -96752912 - L1MA8 LINE L1 -499 5792 5532 4 793 346 261 96 0 chr9 27323271 27323386 -96752786 - MLT1I LTR MaLR -238 173 48 4 793 1238 61 0 0 chr9 27324132 27324279 -96751893 + B1_Mm SINE Alu 1 147 0 4 793 387 0 0 0 chr9 27324316 27324359 -96751813 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 793 371 158 26 26 chr9 27324360 27324438 -96751734 - ID_B1 SINE B4 -10 214 137 4 793 371 159 14 14 chr9 27324762 27324832 -96751340 + BC1_Mm scRNA scRNA 10 79 -73 4 793 294 351 51 108 chr9 27324766 27324961 -96751211 + B4 SINE B4 14 197 -95 4 793 481 319 21 0 chr9 27324861 27325002 -96751170 + B1_Mur1 SINE Alu 6 149 0 4 793 211 163 0 39 chr9 27325196 27325247 -96750925 + T-rich Low_complexity Low_complexity 2 50 0 4 793 299 321 12 0 chr9 27325253 27325334 -96750838 - ID4_ SINE ID 0 83 2 4 793 1187 97 0 6 chr9 27328030 27328207 -96747965 + (TTCCC)n Simple_repeat Simple_repeat 2 177 0 4 793 926 146 50 66 chr9 27328244 27328442 -96747730 - B2_Mm2 SINE B2 0 195 1 4 793 592 214 14 121 chr9 27329161 27329368 -96746804 - Lx4B LINE L1 -4 7054 6870 5 793 502 145 0 0 chr9 27329365 27329441 -96746731 + Lx4B LINE L1 6414 6489 -569 5 793 369 294 94 98 chr9 27329899 27330133 -96746039 + MLT1A0 LTR MaLR 133 365 0 5 793 759 230 54 15 chr9 27330163 27330366 -96745806 - B3 SINE B2 -5 211 1 5 793 269 244 10 91 chr9 27331736 27331835 -96744337 - RLTR11A LTR ERVK -1 527 437 5 793 533 15 15 0 chr9 27331838 27331904 -96744268 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 793 7965 40 9 4 chr9 27331904 27333111 -96743061 - L1Md_F2 LINE L1 -28 6554 5341 5 793 1458 212 41 91 chr9 27333111 27333573 -96742599 - RLTR11A LTR ERVK -89 439 1 5 793 375 41 0 0 chr9 27334652 27334701 -96741471 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 793 243 319 93 36 chr9 27335600 27335740 -96740432 - MER121 Unknown Unknown -245 167 20 5 793 503 157 9 0 chr9 27336862 27336970 -96739202 + (TCCA)n Simple_repeat Simple_repeat 4 112 0 5 793 287 341 36 22 chr9 27337323 27337461 -96738711 + MIRb SINE MIR 7 146 -122 5 793 501 291 0 33 chr9 27337782 27337935 -96738237 + B1F SINE Alu 1 148 -1 5 793 188 369 76 15 chr9 27337967 27338099 -96738073 - MIRc SINE MIR -64 204 65 5 793 211 329 0 0 chr9 27338308 27338384 -96737788 - MIRc SINE MIR -13 255 180 5 793 429 217 49 24 chr9 27338375 27338498 -96737674 - MIR SINE MIR -1 261 136 5 793 1411 151 4 0 chr9 27339086 27339311 -96736861 - URR1A DNA MER1_type 0 226 1 5 793 1152 214 93 22 chr9 27339765 27340089 -96736083 + MTD LTR MaLR 59 405 -14 5 793 363 276 31 47 chr9 27340414 27340543 -96735629 + ID_B1 SINE B4 70 196 -28 5 793 642 344 55 55 chr9 27341361 27341653 -96734519 + B4A SINE B4 1 292 0 5 793 640 301 108 8 chr9 27342514 27342881 -96733291 - L1MB5 LINE L1 -10 6170 5767 5 793 804 318 38 29 chr9 27343334 27343680 -96732492 + MLT1A0 LTR MaLR 7 355 -10 5 793 243 0 0 0 chr9 27344078 27344105 -96732067 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 5 793 1019 206 15 10 chr9 27344887 27345088 -96731084 + B3 SINE B2 1 202 -14 5 793 345 24 0 0 chr9 27345095 27345137 -96731035 + (TAG)n Simple_repeat Simple_repeat 3 44 0 5 793 297 0 0 0 chr9 27345610 27345643 -96730529 + (T)n Simple_repeat Simple_repeat 1 33 0 5 793 204 319 14 0 chr9 27347630 27347702 -96728470 - L2b LINE L2 -42 3333 3261 5 793 653 277 54 0 chr9 27347853 27348019 -96728153 + ORR1E LTR MaLR 3 177 -182 5 793 1219 40 7 0 chr9 27348131 27348283 -96727889 + L1_Mus1 LINE L1 6415 6567 0 5 793 351 233 107 0 chr9 27348613 27348716 -96727456 - MTEa LTR MaLR -8 371 258 5 793 824 186 6 0 chr9 27348838 27349015 -96727157 + CT-rich Low_complexity Low_complexity 2 179 0 5 793 230 289 24 0 chr9 27349071 27349154 -96727018 - MTEa LTR MaLR -284 90 6 5 793 668 157 100 0 chr9 27350199 27350339 -96725833 - Lx9 LINE L1 0 7644 7491 5 793 1226 143 11 0 chr9 27350340 27350529 -96725643 + Lx9 LINE L1 7260 7450 -194 5 793 203 182 0 22 chr9 27351783 27351828 -96724344 + GA-rich Low_complexity Low_complexity 1 44 0 5 793 624 204 0 28 chr9 27352014 27352155 -96724017 - RMER1B Other Other -6 1060 924 5 793 637 173 54 0 chr9 27352298 27352432 -96723740 - RMER1B Other Other -179 887 780 5 793 234 184 41 0 chr9 27352720 27352769 -96723403 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 5 793 395 235 81 64 chr9 27352770 27352943 -96723229 - Lx9 LINE L1 -128 7516 7341 5 793 297 51 0 0 chr9 27352943 27352982 -96723190 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 793 1268 108 6 0 chr9 27352983 27353159 -96723013 - B2_Mm1t SINE B2 -15 178 2 5 793 2794 237 55 46 chr9 27353166 27353949 -96722223 - Lx9 LINE L1 -303 7341 6552 5 793 2246 274 43 26 chr9 27353955 27354608 -96721564 - MTEb-int LTR MaLR -186 1394 731 5 793 631 102 25 0 chr9 27354608 27354726 -96721446 + (TTTC)n Simple_repeat Simple_repeat 1 121 0 5 793 207 204 0 0 chr9 27354721 27354765 -96721407 + C-rich Low_complexity Low_complexity 4 47 0 5 793 2813 81 5 0 chr9 27354769 27355141 -96721031 - L1_Mus3 LINE L1 0 6638 6265 5 793 187 29 0 79 chr9 27355165 27355203 -96720969 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 793 241 222 0 0 chr9 27355215 27355260 -96720912 - L1_Mus3 LINE L1 -329 6309 6265 5 793 185 0 40 0 chr9 27355287 27355312 -96720860 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 793 1067 273 43 103 chr9 27355331 27355380 -96720792 - MTEb-int LTR MaLR -990 590 543 5 793 400 314 80 0 chr9 27355380 27355517 -96720655 + RSINE1 SINE B4 3 150 -15 5 793 1067 277 44 98 chr9 27355517 27356057 -96720115 - MTEb-int LTR MaLR -1038 542 8 5 793 540 246 122 29 chr9 27356064 27356236 -96719936 - MTEb LTR MaLR 0 379 192 5 793 218 114 44 22 chr9 27356236 27356281 -96719891 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 5 793 686 141 8 0 chr9 27356302 27356430 -96719742 + (TTTC)n Simple_repeat Simple_repeat 4 132 0 5 793 3446 207 8 86 chr9 27356610 27357454 -96718718 + L1_Mur3 LINE L1 5084 5830 -50 5 793 4498 160 156 33 chr9 27357452 27357522 -96718650 + Lx4B LINE L1 5989 6074 -984 5 793 270 0 0 0 chr9 27357522 27357552 -96718620 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 793 4498 160 156 33 chr9 27357552 27358428 -96717744 + Lx4B LINE L1 6075 7051 -7 5 793 1041 325 129 36 chr9 27358480 27358529 -96717643 - L2 LINE L2 -951 2468 2413 5 793 2373 95 3 58 chr9 27358529 27358875 -96717297 - ORR1A2 LTR MaLR 0 327 1 5 793 1041 325 129 36 chr9 27358875 27360099 -96716073 - L2 LINE L2 -1007 2412 1076 5 793 21 0 0 0 chr9 27360132 27360153 -96716019 + AT_rich Low_complexity Low_complexity 1 21 0 5 793 549 191 23 258 chr9 27360934 27361287 -96714885 + RLTR23 LTR ERV1 6 275 -155 5 793 459 0 0 0 chr9 27361343 27361394 -96714778 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 793 435 223 0 28 chr9 27361397 27361503 -96714669 - RLTR20B2 LTR ERVK -107 453 351 5 793 382 206 70 113 chr9 27361501 27361643 -96714529 - RLTR20B2 LTR ERVK -421 156 21 5 793 709 215 12 18 chr9 27361644 27361810 -96714362 + RLTR23 LTR ERV1 264 428 -2 5 793 724 267 94 0 chr9 27362038 27362240 -96713932 + MTEa LTR MaLR 133 353 -26 5 793 873 126 0 0 chr9 27362240 27362383 -96713789 + (CAG)n Simple_repeat Simple_repeat 1 143 0 5 793 3203 93 26 0 chr9 27362385 27362804 -96713368 + RLTR23 LTR ERV1 1 430 0 5 793 379 265 0 0 chr9 27362841 27362924 -96713248 - ID4 SINE ID 0 83 1 5 793 235 182 0 0 chr9 27363050 27363094 -96713078 - RMER21A LTR ERV1 -263 684 641 5 793 508 274 37 74 chr9 27363851 27364068 -96712104 - MIR SINE MIR -14 248 40 5 793 630 60 0 0 chr9 27364788 27364871 -96711301 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 793 21 36 0 0 chr9 27365907 27365935 -96710237 + AT_rich Low_complexity Low_complexity 1 28 0 5 793 294 260 93 43 chr9 27366517 27366678 -96709494 - MLT1D LTR MaLR -9 458 290 5 793 324 347 35 12 chr9 27366730 27366899 -96709273 - MLT1D LTR MaLR -324 181 9 5 793 337 363 29 29 chr9 27366913 27367120 -96709052 + MIR SINE MIR 32 238 -24 5 793 1335 265 52 0 chr9 27367171 27367496 -96708676 - ORR1D2 LTR MaLR -6 364 23 5 793 244 226 36 89 chr9 27367624 27367736 -96708436 + L1MB4 LINE L1 4562 4667 -1473 5 793 299 327 93 83 chr9 27367940 27368264 -96707908 + ORR1E LTR MaLR 33 359 0 5 793 559 272 128 40 chr9 27368758 27369135 -96707037 + L1MB4 LINE L1 5186 5587 -593 5 793 351 278 37 21 chr9 27369147 27369310 -96706862 + L1MB4 LINE L1 6018 6183 0 5 793 2832 261 42 87 chr9 27370252 27370678 -96705494 + Lx9 LINE L1 6505 6907 -737 5 793 768 191 0 47 chr9 27370678 27370826 -96705346 - B1_Mur4 SINE Alu -9 141 1 5 793 2832 261 42 87 chr9 27370826 27371397 -96704775 + Lx9 LINE L1 6908 7457 -187 5 793 248 28 56 0 chr9 27371397 27371433 -96704739 + (TATG)n Simple_repeat Simple_repeat 1 38 0 5 793 23 33 0 0 chr9 27371468 27371498 -96704674 + AT_rich Low_complexity Low_complexity 1 30 0 5 793 932 314 68 0 chr9 27371562 27371884 -96704288 + MTE2b LTR MaLR 13 356 -23 5 793 2645 86 174 2 chr9 27371884 27372338 -96703834 + RLTR47_MM LTR ERV1 1 532 0 5 793 237 265 11 108 chr9 27372338 27372374 -96703798 + MTE2b LTR MaLR 386 421 0 5 793 2092 260 53 11 chr9 27372374 27372988 -96703184 + MTE2a-int LTR MaLR 939 1578 -2 5 793 530 328 154 13 chr9 27372990 27373308 -96702864 + MTE2a LTR MaLR 1 363 -16 5 793 4390 58 0 2 chr9 27373308 27373859 -96702313 - L1_Mus1 LINE L1 -404 6163 5614 5 793 2409 94 194 3 chr9 27373860 27374238 -96701934 + L1_Mus1 LINE L1 6128 6582 0 5 793 368 322 42 0 chr9 27374265 27374383 -96701789 - ORR1E LTR MaLR -235 124 2 5 793 236 344 10 0 chr9 27376862 27376958 -96699214 + L2 LINE L2 2823 2919 -500 5 793 2652 44 91 24 chr9 27377329 27377704 -96698468 + MTB LTR MaLR 1 400 0 5 793 207 0 0 0 chr9 27378268 27378291 -96697881 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 793 417 268 0 43 chr9 27378298 27378415 -96697757 - PB1D10 SINE Alu 0 117 6 5 793 504 0 0 0 chr9 27378778 27378834 -96697338 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 793 315 0 0 0 chr9 27378834 27378868 -96697304 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 793 379 322 134 1 chr9 27378976 27379147 -96697025 - MLT2B4 LTR ERVL -225 331 134 5 793 290 266 123 9 chr9 27379171 27379285 -96696887 - MTEa LTR MaLR -233 146 20 5 793 362 52 103 0 chr9 27380109 27380167 -96696005 + L1_Mus2 LINE L1 6503 6566 0 5 793 180 0 0 0 chr9 27380733 27380753 -96695419 + (T)n Simple_repeat Simple_repeat 1 20 0 5 793 2464 209 44 33 chr9 27381708 27382250 -96693922 + RMER15 LTR ERVL 1 531 -44 5 793 252 0 0 0 chr9 27382250 27382278 -96693894 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 793 2464 209 44 33 chr9 27382278 27382304 -96693868 + RMER15 LTR ERVL 532 573 -2 5 793 1598 286 60 36 chr9 27384735 27385403 -96690769 - L1MB7 LINE L1 -13 6171 5488 5 793 586 277 196 38 chr9 27385483 27385860 -96690312 - Lx8 LINE L1 0 7473 7038 5 793 4525 151 8 24 chr9 27385854 27386650 -96689522 - L1_Mur1 LINE L1 -866 5011 4229 5 793 996 124 0 30 chr9 27386648 27386814 -96689358 + L1_Mur1 LINE L1 4996 5156 -730 5 793 4532 130 58 0 chr9 27386816 27387524 -96688648 + Lx LINE L1 5905 6653 -1 5 793 497 274 47 31 chr9 27387538 27387566 -96688606 - Lx8 LINE L1 -469 7004 6977 5 793 450 0 0 0 chr9 27387566 27387616 -96688556 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 793 497 274 47 31 chr9 27387616 27387779 -96688393 - Lx8 LINE L1 -497 6976 6810 5 793 348 330 0 0 chr9 27388045 27388133 -96688039 + ID_B1 SINE B4 82 169 -55 5 793 263 364 36 0 chr9 27388133 27388155 -96688017 + PB1D10 SINE Alu 1 114 -3 5 793 1643 290 30 9 chr9 27388157 27388620 -96687552 + Lx8 LINE L1 6251 6723 -750 5 793 408 287 72 35 chr9 27388643 27388744 -96687428 - L1MB7 LINE L1 -1106 5040 4935 5 793 525 71 0 0 chr9 27388744 27388814 -96687358 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 793 408 303 85 36 chr9 27388814 27389127 -96687045 - L1MB7 LINE L1 -1212 4934 4601 5 793 322 236 169 8 chr9 27389301 27389425 -96686747 - L1MB7 LINE L1 -1533 4613 4470 5 793 1541 219 112 3 chr9 27389425 27389801 -96686371 + MTD LTR MaLR 3 419 0 5 793 430 323 0 25 chr9 27389801 27390001 -96686171 - L1MB7 LINE L1 -1672 4474 4280 5 793 207 0 0 0 chr9 27390914 27390937 -96685235 + (CAGG)n Simple_repeat Simple_repeat 2 24 0 5 793 491 0 0 17 chr9 27391577 27391637 -96684535 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 6 793 303 274 42 58 chr9 27391803 27391993 -96684179 - L1MB7 LINE L1 -2268 3878 3692 5 793 1747 183 267 7 chr9 27392019 27392442 -96683730 - MT2A LTR ERVL 0 533 1 6 793 23 0 0 0 chr9 27392610 27392633 -96683539 + AT_rich Low_complexity Low_complexity 1 23 0 6 793 528 103 50 25 chr9 27392633 27392793 -96683379 + (TA)n Simple_repeat Simple_repeat 2 165 0 6 793 468 320 95 27 chr9 27393765 27394028 -96682144 - MER58B DNA MER1_type -4 337 57 6 794 561 30 0 0 chr9 27394396 27394463 -96681709 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 794 718 266 121 4 chr9 27394471 27394720 -96681452 - B4A SINE B4 -12 280 3 6 794 3776 57 0 0 chr9 27394921 27395392 -96680780 - L1Md_F3 LINE L1 -14 6570 6100 6 794 1053 140 0 0 chr9 27395542 27395720 -96680452 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 6 794 929 88 7 0 chr9 27395755 27395892 -96680280 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 6 794 5989 78 10 0 chr9 27395901 27396688 -96679484 - L1_Mus3 LINE L1 -12 6626 5832 6 794 1167 119 5 15 chr9 27397432 27397628 -96678544 - L1_Mur3 LINE L1 -1566 4314 4121 6 794 1130 82 7 0 chr9 27397772 27397919 -96678253 - B1_Mus1 SINE Alu 0 148 1 6 794 369 330 195 15 chr9 27398259 27398459 -96677713 + Tigger5 DNA MER2_type 1 236 -2170 6 794 31858 74 24 2 chr9 27398522 27404575 -96671597 - L1Md_F2 LINE L1 -3 6579 392 6 794 6852 219 61 60 chr9 27404705 27405271 -96670901 - Lx6 LINE L1 -8 7452 6895 6 794 447 19 0 0 chr9 27405271 27405323 -96670849 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 794 6852 219 61 60 chr9 27405323 27405465 -96670707 - Lx6 LINE L1 -566 6894 6741 6 794 552 56 0 0 chr9 27405465 27405537 -96670635 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 6 794 11271 183 52 42 chr9 27405537 27407577 -96668595 - Lx6 LINE L1 -720 6740 4637 6 794 192 77 0 0 chr9 27407577 27407603 -96668569 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 6 794 11271 157 45 29 chr9 27407603 27408178 -96667994 - Lx6 LINE L1 -1244 4636 4060 6 794 300 27 0 0 chr9 27408178 27408215 -96667957 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 794 414 0 0 0 chr9 27408215 27408260 -96667912 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 794 11271 157 45 29 chr9 27408260 27408857 -96667315 - Lx6 LINE L1 -1821 4059 3464 6 794 570 75 0 0 chr9 27409780 27409860 -96666312 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 794 1043 96 0 33 chr9 27409864 27410048 -96666124 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 6 794 1053 83 0 0 chr9 27410265 27410410 -96665762 + (TTTCC)n Simple_repeat Simple_repeat 4 148 0 6 794 270 0 0 0 chr9 27410412 27410442 -96665730 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 6 794 402 74 0 0 chr9 27410443 27410497 -96665675 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 794 3609 70 2 11 chr9 27410522 27411000 -96665172 - L1_Mus2 LINE L1 0 6566 6093 6 794 4173 170 133 33 chr9 27411003 27412118 -96664054 - Lx6 LINE L1 -2407 3473 2248 6 794 684 229 7 21 chr9 27412321 27412464 -96663708 - B1_Mur3 SINE Alu -1 148 8 6 794 546 271 7 0 chr9 27412464 27412615 -96663557 - L1MC1 LINE L1 -501 5832 5681 6 794 365 232 2 2 chr9 27412644 27412720 -96663452 + B4A SINE B4 1 77 -88 6 794 450 0 0 0 chr9 27412865 27412915 -96663257 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 794 7249 132 36 6 chr9 27412969 27414423 -96661749 + Lx4A LINE L1 5344 6848 -210 6 794 256 317 24 0 chr9 27415168 27415250 -96660922 + Tigger5 DNA MER2_type 2323 2406 0 6 794 537 303 52 26 chr9 27415322 27415732 -96660440 + L1M5 LINE L1 5153 5571 -623 6 794 509 135 11 0 chr9 27415978 27416067 -96660105 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 794 180 0 0 0 chr9 27416089 27416109 -96660063 + (CCTAG)n Simple_repeat Simple_repeat 4 23 0 6 794 327 327 364 10 chr9 27416253 27416460 -96659712 + B4 SINE B4 2 281 -11 6 794 563 208 28 0 chr9 27416553 27416659 -96659513 - B1F SINE Alu 0 149 41 6 794 564 262 78 53 chr9 27416659 27416999 -96659173 - L1M2 LINE L1 -1827 5015 4657 6 794 1053 218 85 27 chr9 27417000 27417259 -96658913 + MTC LTR MaLR 140 413 -8 6 794 1353 289 71 80 chr9 27417265 27417799 -96658373 - L1M2 LINE L1 -2492 4353 3804 6 794 266 170 0 0 chr9 27417799 27417846 -96658326 - ORR1D1 LTR MaLR 0 374 328 6 794 1353 289 71 80 chr9 27417846 27418304 -96657868 - L1M2 LINE L1 -2492 3803 3330 6 794 1525 196 109 3 chr9 27418304 27418642 -96657530 + ORR1D1 LTR MaLR 1 374 0 6 794 1353 289 71 80 chr9 27418642 27418946 -96657226 - L1M2 LINE L1 -3516 3329 3023 6 794 1254 157 18 17 chr9 27418963 27419227 -96656945 + MTC LTR MaLR 1 266 -153 6 794 1033 236 28 5 chr9 27420143 27420360 -96655812 + MTC LTR MaLR 200 421 0 6 794 7441 47 18 0 chr9 27420475 27421439 -96654733 - L1Md_F2 LINE L1 -13 6569 5589 6 794 25 75 0 0 chr9 27421496 27421549 -96654623 + AT_rich Low_complexity Low_complexity 1 53 0 6 794 488 307 68 13 chr9 27421762 27422158 -96654014 - L1M2 LINE L1 -4277 2572 2155 6 794 364 311 72 32 chr9 27422423 27422672 -96653500 - Lx8 LINE L1 -2 7471 7213 6 794 1651 136 11 22 chr9 27423217 27423466 -96652706 - ORR1A4 LTR MaLR -8 321 70 6 794 3650 78 2 2 chr9 27423466 27423941 -96652231 + MT2C_Mm LTR ERVL 1 475 0 6 794 1651 136 11 22 chr9 27423941 27423962 -96652210 - ORR1A4 LTR MaLR -260 69 54 6 794 223 140 40 0 chr9 27425785 27425835 -96650337 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 794 355 262 37 37 chr9 27426051 27426158 -96650014 + PB1 SINE Alu 19 125 -2 6 794 1701 261 49 9 chr9 27426936 27427388 -96648784 - RMER5 LTR ERV1 -32 502 33 6 794 456 268 0 26 chr9 27427571 27427686 -96648486 + PB1D10 SINE Alu 1 112 -5 6 794 210 378 76 7 chr9 27427817 27427961 -96648211 + ID_B1 SINE B4 2 155 -69 6 794 21 57 0 0 chr9 27428098 27428133 -96648039 + AT_rich Low_complexity Low_complexity 1 35 0 6 794 183 260 0 20 chr9 27428904 27428955 -96647217 - L2c LINE L2 -12 3375 3326 6 794 196 229 0 20 chr9 27430767 27430816 -96645356 - L2a LINE L2 -22 3404 3357 6 794 702 350 92 25 chr9 27431746 27432303 -96643869 - L2 LINE L2 -909 2510 1917 6 794 461 274 52 7 chr9 27432488 27432624 -96643548 - B1F1 SINE Alu -7 142 1 6 794 814 132 281 0 chr9 27432710 27432877 -96643295 - B3 SINE B2 -2 214 1 6 794 2799 229 41 27 chr9 27435719 27436539 -96639633 - RMER1B Other Other -3 1063 55 6 794 241 277 114 21 chr9 27437064 27437204 -96638968 + MIR SINE MIR 86 238 -24 6 794 234 150 0 0 chr9 27437611 27437651 -96638521 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 794 207 0 0 0 chr9 27437651 27437674 -96638498 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 794 708 219 21 68 chr9 27437674 27437865 -96638307 - B3A SINE B2 -16 182 1 6 794 443 347 113 65 chr9 27437890 27438565 -96637607 + L1M5 LINE L1 4138 4844 -1302 6 794 1398 231 67 34 chr9 27438921 27439279 -96636893 - ORR1D2 LTR MaLR 0 370 1 6 794 402 57 0 0 chr9 27439543 27439596 -96636576 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 794 285 289 35 26 chr9 27439606 27439800 -96636372 + L1M5 LINE L1 5627 5823 -371 6 794 603 0 0 0 chr9 27441369 27441436 -96634736 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 794 247 333 23 38 chr9 27443251 27443382 -96632790 + MIRc SINE MIR 60 188 -80 6 794 183 243 0 0 chr9 27443906 27443943 -96632229 - MIRc SINE MIR -110 158 122 6 794 1925 128 8 90 chr9 27443956 27444333 -96631839 + ORR1B1 LTR MaLR 41 386 -8 6 794 2628 277 35 9 chr9 27444590 27445329 -96630843 - Lx9 LINE L1 -208 7436 6679 6 794 23 33 0 0 chr9 27445782 27445812 -96630360 + AT_rich Low_complexity Low_complexity 1 30 0 6 794 1244 188 9 5 chr9 27446001 27446225 -96629947 + URR1B DNA MER1_type 1 225 0 6 794 2077 135 19 36 chr9 27447183 27447598 -96628574 + RMER17C LTR ERVK 3 410 0 6 794 1767 132 122 6 chr9 27448848 27448956 -96627216 + ORR1C1 LTR MaLR 5 128 -250 6 794 348 24 0 0 chr9 27448956 27448997 -96627175 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 794 1767 132 122 6 chr9 27448997 27449216 -96626956 + ORR1C1 LTR MaLR 129 369 -9 6 794 278 312 15 30 chr9 27449577 27449709 -96626463 - MIR SINE MIR -22 240 111 6 794 335 347 0 51 chr9 27451041 27451199 -96624973 - L2a LINE L2 -45 3381 3232 6 794 189 0 0 0 chr9 27451214 27451235 -96624937 + (T)n Simple_repeat Simple_repeat 1 21 0 6 794 648 59 0 0 chr9 27451388 27451473 -96624699 + (GA)n Simple_repeat Simple_repeat 2 86 0 6 794 1606 205 53 24 chr9 27452007 27452386 -96623786 + MTC LTR MaLR 32 421 0 6 794 300 52 33 33 chr9 27452786 27452846 -96623326 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 6 794 1144 76 7 0 chr9 27452846 27452991 -96623181 - B1_Mm SINE Alu 0 147 2 6 794 242 289 78 58 chr9 27453019 27453122 -96623050 + B1_Mm SINE Alu 6 110 -37 6 794 554 75 0 12 chr9 27453617 27453698 -96622474 + (TCC)n Simple_repeat Simple_repeat 2 81 0 6 794 519 17 0 0 chr9 27453695 27453755 -96622417 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 794 279 133 0 0 chr9 27454508 27454553 -96621619 + (T)n Simple_repeat Simple_repeat 1 45 0 6 794 207 139 0 0 chr9 27455741 27455777 -96620395 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 794 192 152 0 0 chr9 27455777 27455810 -96620362 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 794 715 268 126 35 chr9 27455825 27456080 -96620092 - B4 SINE B4 -14 278 1 6 794 489 291 16 0 chr9 27456372 27456499 -96619673 + RSINE1 SINE B4 8 136 -29 6 794 270 297 21 42 chr9 27456881 27456976 -96619196 + LTR90B LTR LTR 230 322 -474 6 794 1874 271 85 17 chr9 27457842 27458361 -96617811 + Lx5 LINE L1 6480 7033 -17 6 794 458 342 58 22 chr9 27459600 27459824 -96616348 - LTR16A LTR ERVL -10 441 210 6 794 633 312 12 41 chr9 27460297 27460541 -96615631 + Tigger5 DNA MER2_type 6 242 -2164 6 794 262 358 0 9 chr9 27460537 27460647 -96615525 + Tigger5 DNA MER2_type 2291 2399 -7 6 794 261 200 50 0 chr9 27461775 27461835 -96614337 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 6 794 23 0 0 0 chr9 27462812 27462835 -96613337 + AT_rich Low_complexity Low_complexity 1 23 0 6 794 324 291 101 48 chr9 27462836 27463045 -96613127 - L1MD LINE L1 -3254 2892 2673 6 794 354 265 10 20 chr9 27463061 27463161 -96613011 - ID_B1 SINE B4 -5 219 121 6 794 1347 72 0 0 chr9 27467673 27467853 -96608319 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 794 408 20 0 0 chr9 27467862 27467911 -96608261 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 794 191 333 20 40 chr9 27468107 27468207 -96607965 - MIR3 SINE MIR -3 205 108 7 794 516 72 0 0 chr9 27468931 27469000 -96607172 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 7 794 1895 186 59 5 chr9 27469089 27469463 -96606709 + ORR1B1 LTR MaLR 1 394 0 7 794 226 329 35 42 chr9 27470793 27470868 -96605304 + MIR SINE MIR 5 80 -182 7 794 2045 139 85 9 chr9 27470868 27471209 -96604963 - ORR1B2 LTR MaLR 0 367 1 7 794 226 329 35 42 chr9 27471209 27471276 -96604896 + MIR SINE MIR 81 146 -116 7 794 555 261 159 0 chr9 27471978 27472135 -96604037 - B3A SINE B2 -16 182 1 7 794 316 200 36 36 chr9 27472177 27472260 -96603912 - ID4 SINE ID 0 83 1 7 794 564 123 0 0 chr9 27472906 27473020 -96603152 + (TC)n Simple_repeat Simple_repeat 2 115 0 7 794 346 189 93 13 chr9 27474461 27474536 -96601636 + ID2 SINE ID 1 81 -2 7 794 7495 21 0 0 chr9 27474545 27475464 -96600708 - L1Md_T LINE L1 -626 5956 5037 7 794 5705 32 0 0 chr9 27475464 27476121 -96600051 + L1Md_T LINE L1 5924 6580 -2 7 794 180 111 0 0 chr9 27476147 27476174 -96599998 + (A)n Simple_repeat Simple_repeat 1 27 0 7 794 210 318 75 8 chr9 27476196 27476329 -96599843 - MIRb SINE MIR -10 258 117 7 794 28 29 0 0 chr9 27476549 27476584 -96599588 + AT_rich Low_complexity Low_complexity 1 35 0 7 794 26 0 0 0 chr9 27477473 27477499 -96598673 + AT_rich Low_complexity Low_complexity 1 26 0 7 794 387 119 0 0 chr9 27479164 27479231 -96596941 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 7 794 382 143 26 0 chr9 27479408 27479485 -96596687 + CT-rich Low_complexity Low_complexity 3 81 0 7 794 999 129 171 0 chr9 27482401 27482594 -96593578 + URR1A DNA MER1_type 1 226 0 7 794 737 199 0 41 chr9 27482731 27482878 -96593294 + B1_Mur4 SINE Alu 10 150 0 7 794 321 312 61 56 chr9 27483344 27483558 -96592614 + L1MEg LINE L1 41 255 -5980 7 794 1841 151 25 10 chr9 27484143 27484457 -96591715 - ORR1A3 LTR MaLR -4 322 4 7 794 1754 159 198 0 chr9 27484477 27484836 -96591336 + RLTR23 LTR ERV1 1 430 0 7 794 415 264 45 9 chr9 27484896 27485007 -96591165 + PB1D10 SINE Alu 1 115 -2 7 794 279 284 40 13 chr9 27485038 27485113 -96591059 + ID2 SINE ID 3 79 -4 7 794 252 241 19 0 chr9 27485253 27485307 -96590865 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 794 598 300 115 57 chr9 27485492 27486022 -96590150 + L1MEg LINE L1 2038 2598 -4735 7 794 618 133 66 7 chr9 27486076 27486212 -96589960 - Lx9 LINE L1 -1 7643 7500 7 794 218 182 0 0 chr9 27486213 27486257 -96589915 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 794 635 172 25 0 chr9 27486277 27486399 -96589773 - Lx9 LINE L1 -168 7476 7352 7 794 36079 67 6 16 chr9 27486403 27492541 -96583631 - L1Md_F2 LINE L1 0 6582 511 7 794 386 323 43 43 chr9 27492712 27492851 -96583321 - Zaphod DNA Tip100 -10 4021 3883 7 794 1286 63 130 10 chr9 27492857 27493049 -96583123 - L1_Mus1 LINE L1 0 6567 6353 7 794 426 231 48 40 chr9 27493051 27493177 -96582995 - Lx9 LINE L1 -290 7354 7228 7 794 234 305 0 28 chr9 27493173 27493281 -96582891 + L1MEg LINE L1 2702 2806 -4527 7 794 228 100 0 0 chr9 27493375 27493415 -96582757 + (A)n Simple_repeat Simple_repeat 1 40 0 7 794 312 306 107 42 chr9 27493512 27493915 -96582257 + L1MEg LINE L1 2863 3291 -4042 7 794 27 49 0 0 chr9 27494037 27494078 -96582094 + AT_rich Low_complexity Low_complexity 1 41 0 7 794 21 82 0 0 chr9 27494178 27494227 -96581945 + AT_rich Low_complexity Low_complexity 1 49 0 7 794 582 192 82 25 chr9 27494251 27494412 -96581760 + ORR1E LTR MaLR 50 237 -122 7 794 4179 107 22 10 chr9 27495422 27496015 -96580157 + MT2B LTR ERVL 2 601 0 7 794 241 307 0 0 chr9 27496086 27496161 -96580011 - MER5A1 DNA MER1_type -89 77 3 7 794 595 314 135 21 chr9 27496492 27496817 -96579355 + MLT1B LTR MaLR 29 390 0 7 794 366 273 37 32 chr9 27498033 27498142 -96578030 - PB1D10 SINE Alu -1 116 12 7 794 364 367 62 62 chr9 27498435 27498743 -96577429 + MLT1G LTR MaLR 94 401 -190 7 794 462 326 87 30 chr9 27499590 27499821 -96576351 - MLT1F1 LTR MaLR -19 550 307 7 794 183 42 0 0 chr9 27500090 27500114 -96576058 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 794 408 20 0 0 chr9 27500122 27500171 -96576001 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 2 794 262 390 29 0 chr9 27500483 27500588 -96575584 - MIRb SINE MIR -147 121 14 3 794 432 0 0 0 chr9 27501263 27501311 -96574861 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 794 279 276 148 7 chr9 27503752 27503887 -96572285 + MIR SINE MIR 108 261 -1 5 794 1686 31 0 0 chr9 27504027 27504219 -96571953 - B2_Mm1t SINE B2 -1 192 1 6 794 604 226 92 31 chr9 27504557 27504753 -96571419 - Tigger7 DNA MER2_type -9 2482 2275 7 794 846 270 169 8 chr9 27504758 27505124 -96571048 - Tigger7 DNA MER2_type -2030 461 37 7 794 1525 151 10 68 chr9 27505249 27505541 -96570631 - ORR1A3 LTR MaLR -51 275 1 8 794 231 287 0 0 chr9 27505614 27505764 -96570408 + (TG)n Simple_repeat Simple_repeat 2 151 0 9 794 572 259 150 35 chr9 27505767 27506027 -96570145 - B4 SINE B4 -2 290 1 1 794 330 26 0 0 chr9 27506181 27506220 -96569952 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 794 1873 269 45 27 chr9 27507147 27507742 -96568430 + L1ME1 LINE L1 5395 6000 -179 1 794 3825 45 13 4 chr9 27508592 27509066 -96567106 + L1_Mus1 LINE L1 6090 6567 0 1 794 2292 172 9 21 chr9 27510844 27511266 -96564906 + MTC LTR MaLR 5 421 0 1 794 5325 184 57 63 chr9 27511267 27512527 -96563645 + MTC-int LTR MaLR 3 1254 -4 1 794 1549 213 138 8 chr9 27512535 27512904 -96563268 + MTC LTR MaLR 5 421 0 1 794 1592 278 39 9 chr9 27513632 27514166 -96562006 + L1MB8 LINE L1 5614 6163 -15 1 794 415 331 20 7 chr9 27516048 27516197 -96559975 + MIR SINE MIR 54 204 -58 1 794 196 200 36 18 chr9 27516321 27516377 -96559795 - L3b LINE CR1 -245 237 181 1 794 304 301 61 49 chr9 27516553 27516717 -96559455 + MIRb SINE MIR 71 236 -32 1 794 882 299 106 12 chr9 27516734 27517158 -96559014 + MLT2B2 LTR ERVL 1 477 -43 1 794 323 303 131 81 chr9 27517669 27518520 -96557652 + L1MA10 LINE L1 5283 6334 0 2 794 183 129 0 0 chr9 27518817 27518848 -96557324 + (A)n Simple_repeat Simple_repeat 1 31 0 2 794 4795 37 5 0 chr9 27523180 27523746 -96552426 - L1Md_F2 LINE L1 -1 6581 6013 2 794 1099 56 0 40 chr9 27524012 27524154 -96552018 + B1_Mus2 SINE Alu 3 139 -8 2 794 216 0 0 0 chr9 27524154 27524178 -96551994 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 794 330 244 24 215 chr9 27524188 27524313 -96551859 + Lx7 LINE L1 5628 5742 -1954 2 794 306 50 0 0 chr9 27524313 27524353 -96551819 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 794 323 252 35 173 chr9 27524353 27524524 -96551648 + Lx7 LINE L1 5732 5906 -1738 2 794 210 91 0 0 chr9 27524982 27525015 -96551157 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 99 1146 41 13 27 chr9 27525023 27525172 -96551000 - B1_Mm SINE Alu 0 147 1 2 795 513 0 0 0 chr9 27525810 27525867 -96550305 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 795 260 184 0 0 chr9 27526866 27526915 -96549257 - B1F SINE Alu -9 140 92 3 795 3183 35 56 0 chr9 27526970 27527345 -96548827 + MTA_Mm LTR MaLR 1 396 0 3 795 24 32 0 0 chr9 27527373 27527404 -96548768 + AT_rich Low_complexity Low_complexity 1 31 0 3 795 228 329 35 49 chr9 27527486 27527630 -96548542 + ID_B1 SINE B4 81 222 -2 3 795 328 40 0 39 chr9 27528358 27528410 -96547762 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 795 2808 207 117 8 chr9 27528410 27529062 -96547110 - Lx2B LINE L1 -29 6971 6249 3 795 383 386 53 13 chr9 27530819 27531197 -96544975 + LTR16B2 LTR ERVL 2 394 -68 3 795 192 111 0 0 chr9 27532056 27532092 -96544080 + (T)n Simple_repeat Simple_repeat 1 36 0 3 795 310 257 50 92 chr9 27532367 27532487 -96543685 + LTR16B2 LTR ERVL 345 459 -4 3 795 33 0 0 0 chr9 27532572 27532605 -96543567 + AT_rich Low_complexity Low_complexity 1 33 0 3 795 3247 165 138 78 chr9 27533010 27533599 -96542573 + L1_Mur2 LINE L1 918 1515 -4362 3 795 1350 67 0 0 chr9 27533599 27533777 -96542395 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 795 3247 162 17 121 chr9 27533777 27534213 -96541959 + L1_Mur2 LINE L1 1516 1933 -3944 3 795 2409 218 40 22 chr9 27534213 27534791 -96541381 - RLTR17 LTR ERVK 0 692 105 4 795 5450 149 68 31 chr9 27534797 27534924 -96541248 + L1_Mur2 LINE L1 1927 2048 -3829 3 795 414 0 0 0 chr9 27534924 27534970 -96541202 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 795 5450 149 68 31 chr9 27534970 27535908 -96540264 + L1_Mur2 LINE L1 2049 3030 -2847 3 795 297 0 0 0 chr9 27535936 27535969 -96540203 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 795 279 0 0 0 chr9 27535969 27535999 -96540173 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 795 183 80 0 0 chr9 27536909 27536934 -96539238 + (G)n Simple_repeat Simple_repeat 1 25 0 4 795 1090 233 79 28 chr9 27537180 27537471 -96538701 - MTD LTR MaLR -108 311 6 4 795 639 286 0 64 chr9 27538199 27538386 -96537786 + B3A SINE B2 9 183 -15 4 795 224 211 17 17 chr9 27538386 27538444 -96537728 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 795 493 309 49 41 chr9 27538509 27538776 -96537396 - L1M5 LINE L1 -571 5669 5401 4 795 312 91 0 0 chr9 27539207 27539251 -96536921 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 795 507 33 0 0 chr9 27540271 27540332 -96535840 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 795 347 141 0 15 chr9 27540937 27541002 -96535170 + GA-rich Low_complexity Low_complexity 3 66 0 5 795 223 271 114 0 chr9 27541090 27541160 -96535012 - ID4_ SINE ID -4 79 2 5 795 465 211 0 8 chr9 27541606 27541709 -96534463 - B1_Mur2 SINE Alu -21 128 31 5 795 248 137 20 0 chr9 27542346 27542449 -96533723 + GA-rich Low_complexity Low_complexity 1 105 0 5 795 371 326 80 43 chr9 27545723 27545999 -96530173 - L1MEf LINE L1 -4036 3066 2781 5 795 1051 316 85 13 chr9 27546004 27546462 -96529710 + L1MD2 LINE L1 5651 6141 -218 5 795 582 278 91 33 chr9 27548466 27548741 -96527431 + Tigger6a DNA MER2_type 113 403 -680 5 795 317 250 137 40 chr9 27548986 27549161 -96527011 + Tigger6a DNA MER2_type 769 960 -123 5 795 2389 199 23 54 chr9 27549281 27549838 -96526334 - RLTR20A LTR ERVK -1 540 1 5 795 983 259 81 23 chr9 27549888 27550236 -96525936 + ORR1D1 LTR MaLR 1 368 -6 6 795 351 321 68 69 chr9 27550296 27551022 -96525150 - L1MEf LINE L1 -4658 2444 1720 5 795 233 281 50 50 chr9 27551001 27551102 -96525070 - L1MEf LINE L1 -5804 1530 1430 5 795 250 278 21 32 chr9 27551352 27551445 -96524727 + CT-rich Low_complexity Low_complexity 3 94 0 6 795 715 276 47 86 chr9 27551666 27552182 -96523990 - L1_Mur3 LINE L1 -281 5843 5311 6 795 490 239 29 0 chr9 27552184 27552322 -96523850 + Lx9 LINE L1 7502 7643 -1 6 795 366 297 81 28 chr9 27552327 27552649 -96523523 + L1_Mur3 LINE L1 4951 5318 -825 6 795 941 55 0 8 chr9 27552864 27552993 -96523179 + (TTC)n Simple_repeat Simple_repeat 1 128 0 6 795 476 186 34 23 chr9 27553031 27553207 -96522965 + CT-rich Low_complexity Low_complexity 2 179 0 6 795 279 0 0 0 chr9 27553240 27553271 -96522901 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 6 795 963 315 113 33 chr9 27553271 27554109 -96522063 - L1M4b LINE L1 -2934 4069 3165 6 795 275 255 58 10 chr9 27554544 27554647 -96521525 - L1M4b LINE L1 -4965 2369 2262 6 795 240 328 25 16 chr9 27554644 27554765 -96521407 - L1_Mur1 LINE L1 -4215 1671 1550 6 795 243 125 0 0 chr9 27555697 27555737 -96520435 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 7 795 8487 110 22 4 chr9 27555853 27556143 -96520029 - L1_Mm LINE L1 -1147 4736 4440 7 795 284 0 0 27 chr9 27556143 27556180 -96519992 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 795 1137 68 0 7 chr9 27556187 27556335 -96519837 - B1_Mm SINE Alu 0 147 1 7 795 8711 111 22 4 chr9 27556335 27557368 -96518804 - L1_Mm LINE L1 -1447 4436 3381 7 795 7946 101 7 1 chr9 27557361 27559174 -96516998 + L1_Mus3 LINE L1 4814 6636 -2 7 795 444 86 86 0 chr9 27559181 27559251 -96516921 - MYSERV-int LTR ERVK -761 5789 5714 7 795 550 188 156 0 chr9 27559351 27559479 -96516693 + Lx9 LINE L1 7329 7476 -168 7 795 372 97 0 0 chr9 27559479 27559541 -96516631 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 795 329 135 202 0 chr9 27559554 27559643 -96516529 + Lx9 LINE L1 7533 7639 -5 7 795 44 56 0 0 chr9 27559914 27559986 -96516186 + AT_rich Low_complexity Low_complexity 1 72 0 7 795 1024 254 53 106 chr9 27560250 27560629 -96515543 - MTE2a LTR MaLR 0 379 21 7 795 396 0 0 0 chr9 27561008 27561052 -96515120 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 795 215 312 50 0 chr9 27561063 27561143 -96515029 - B1F1 SINE Alu -57 92 9 8 795 276 100 0 0 chr9 27561990 27562030 -96514142 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 795 660 305 55 0 chr9 27564665 27564865 -96511307 + B3 SINE B2 2 212 -4 8 795 203 262 0 32 chr9 27565230 27565293 -96510879 + CT-rich Low_complexity Low_complexity 2 62 0 8 795 22 0 0 0 chr9 27565363 27565385 -96510787 + AT_rich Low_complexity Low_complexity 1 22 0 8 795 1203 248 84 20 chr9 27565670 27566057 -96510115 + MTD LTR MaLR 1 405 -14 8 795 658 272 15 5 chr9 27566730 27566926 -96509246 + L1MB8 LINE L1 5541 5738 -436 8 795 251 226 3 0 chr9 27567034 27567097 -96509075 + B1F SINE Alu 52 147 -2 8 795 419 292 148 34 chr9 27567138 27567203 -96508969 + L1MB8 LINE L1 5841 5906 -272 8 795 1224 238 113 13 chr9 27567203 27567582 -96508590 - MTD LTR MaLR -2 417 1 8 795 419 292 148 34 chr9 27567582 27567807 -96508365 + L1MB8 LINE L1 5907 6163 -15 8 795 216 286 18 0 chr9 27568510 27568566 -96507606 - ID4_ SINE ID -23 60 4 9 795 531 0 0 0 chr9 27568665 27568724 -96507448 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 795 680 298 40 62 chr9 27568740 27569012 -96507160 - B4A SINE B4 -22 270 5 9 795 661 245 29 0 chr9 27569491 27569630 -96506542 - B1F SINE Alu -1 148 6 9 795 577 258 129 16 chr9 27570250 27570443 -96505729 + B3 SINE B2 1 215 -1 9 795 8044 50 2 7 chr9 27570453 27572018 -96504154 - L1Md_F2 LINE L1 -9 6573 5016 9 795 521 269 106 25 chr9 27572936 27573134 -96503038 - B3 SINE B2 0 216 3 9 795 553 294 78 29 chr9 27574093 27574338 -96501834 - MER102b DNA MER1_type -1 340 84 9 795 337 286 62 0 chr9 27576532 27576644 -96499528 + MER5A1 DNA MER1_type 48 166 0 9 795 1681 178 39 72 chr9 27577376 27577763 -96498409 - ORR1D1 LTR MaLR 0 374 1 9 795 229 312 12 0 chr9 27578772 27578852 -96497320 - L1MD3 LINE L1 -218 7777 7697 1 795 205 315 0 0 chr9 27580118 27580172 -96496000 + GA-rich Low_complexity Low_complexity 1 54 0 1 795 468 0 0 0 chr9 27580441 27580493 -96495679 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 795 209 282 27 40 chr9 27581337 27581411 -96494761 + L2b LINE L2 3103 3175 -200 1 795 573 42 0 0 chr9 27581610 27581682 -96494490 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 795 437 314 35 35 chr9 27581685 27581830 -96494342 - RSINE1 SINE B4 -20 145 1 1 795 329 328 62 54 chr9 27581865 27582107 -96494065 - MIRb SINE MIR -20 248 5 1 795 1176 81 0 0 chr9 27583209 27583357 -96492815 + B1_Mus1 SINE Alu 1 148 0 1 795 424 95 0 39 chr9 27583357 27583434 -96492738 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 1 795 189 0 0 0 chr9 27584852 27584873 -96491299 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 795 180 0 0 0 chr9 27585147 27585167 -96491005 + (A)n Simple_repeat Simple_repeat 1 20 0 1 795 489 127 0 0 chr9 27585521 27585600 -96490572 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1 795 305 273 0 20 chr9 27586434 27586535 -96489637 + MLT1A1 LTR MaLR 306 404 -4 1 795 288 0 0 0 chr9 27586979 27587011 -96489161 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 795 811 134 0 32 chr9 27587477 27587662 -96488510 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 795 730 283 41 29 chr9 27590013 27590257 -96485915 - MER2 DNA MER2_type 0 345 99 1 795 638 294 99 75 chr9 27591283 27591857 -96484315 + HAL1 LINE L1 521 1108 -1399 1 795 21 0 0 0 chr9 27592556 27592577 -96483595 + AT_rich Low_complexity Low_complexity 1 21 0 1 795 262 270 89 11 chr9 27593762 27593852 -96482320 + PB1D7 SINE Alu 2 98 -22 1 795 229 273 0 0 chr9 27593820 27593897 -96482275 + B1_Mus2 SINE Alu 65 141 -6 1 795 282 329 0 0 chr9 27594687 27594766 -96481406 - ID4 SINE ID -3 80 2 1 795 264 218 37 3 chr9 27594801 27594884 -96481288 + B1F SINE Alu 52 144 -5 1 795 195 322 0 0 chr9 27594889 27594976 -96481196 + T-rich Low_complexity Low_complexity 42 128 0 1 795 370 288 28 0 chr9 27596190 27596310 -96479862 + MIRc SINE MIR 38 161 -47 1 795 522 0 0 0 chr9 27597654 27597712 -96478460 + (GAAA)n Simple_repeat Simple_repeat 1 58 0 1 795 846 121 28 17 chr9 27597847 27598023 -96478149 + GA-rich Low_complexity Low_complexity 3 180 0 1 795 210 91 0 0 chr9 27598906 27598939 -96477233 + (CAG)n Simple_repeat Simple_repeat 2 34 0 1 795 226 310 0 22 chr9 27599455 27599544 -96476628 + CT-rich Low_complexity Low_complexity 4 90 0 1 795 572 40 13 0 chr9 27600155 27600230 -96475942 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 795 833 147 6 0 chr9 27601937 27601947 -96474225 + (TG)n Simple_repeat Simple_repeat 1 10 0 1 795 495 0 0 0 chr9 27601947 27602002 -96474170 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 795 833 147 6 0 chr9 27602002 27602154 -96474018 + (TG)n Simple_repeat Simple_repeat 2 154 0 1 795 285 51 0 0 chr9 27603611 27603650 -96472522 + (A)n Simple_repeat Simple_repeat 1 39 0 1 795 423 0 0 0 chr9 27604838 27604885 -96471287 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 795 2979 27 0 0 chr9 27604925 27605262 -96470910 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 795 1518 21 137 0 chr9 27605262 27605452 -96470720 + IAPEz-int LTR ERVK 8 223 -6258 1 795 6055 18 4 0 chr9 27605450 27606125 -96470047 + IAPEz-int LTR ERVK 5804 6481 0 1 795 2979 27 0 0 chr9 27606125 27606462 -96469710 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 795 2410 180 33 15 chr9 27608208 27608666 -96467506 + RMER4A LTR ERVK 1 466 0 1 795 1319 236 26 24 chr9 27609432 27609771 -96466401 + ORR1D1 LTR MaLR 1 340 -34 1 795 414 0 0 0 chr9 27615244 27615290 -96460882 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 795 293 125 0 18 chr9 27615520 27615577 -96460595 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 795 270 0 0 0 chr9 27615701 27615731 -96460441 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 795 343 289 13 19 chr9 27615777 27615936 -96460236 + (CATATA)n Simple_repeat Simple_repeat 1 158 0 1 795 360 0 0 0 chr9 27616601 27616641 -96459531 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 795 791 292 42 15 chr9 27616700 27616739 -96459433 - B4A SINE B4 -21 271 229 1 795 227 29 57 0 chr9 27616739 27616774 -96459398 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 795 791 292 42 15 chr9 27616774 27616998 -96459174 - B4A SINE B4 -64 228 2 1 795 790 295 89 27 chr9 27617173 27617587 -96458585 + LTR16B2 LTR ERVL 23 462 0 1 795 620 219 60 42 chr9 27618085 27618252 -96457920 - MER20 DNA MER1_type -44 175 6 1 795 8116 82 16 1 chr9 27619225 27620603 -96455569 - L1_Mus3 LINE L1 0 6638 5244 1 795 307 274 14 0 chr9 27621688 27621761 -96454411 + MER21B LTR ERV1 19 92 -771 1 795 1564 326 64 37 chr9 27621764 27622512 -96453660 + MER21B LTR ERV1 46 813 -50 1 795 233 229 14 41 chr9 27623324 27623397 -96452775 + MTEa LTR MaLR 278 348 -31 1 795 252 273 110 10 chr9 27623425 27623525 -96452647 - L2 LINE L2 -521 2898 2789 1 795 450 0 0 0 chr9 27623708 27623758 -96452414 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 795 593 80 0 11 chr9 27623813 27623902 -96452270 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 795 414 0 0 0 chr9 27624062 27624108 -96452064 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 795 477 0 0 0 chr9 27624108 27624160 -96452012 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 795 215 319 50 21 chr9 27624329 27624470 -96451702 - MIRm SINE MIR -125 151 7 1 795 495 328 11 22 chr9 27625125 27625303 -96450869 + MT2A LTR ERVL 253 428 -105 1 795 21 71 0 0 chr9 27625401 27625443 -96450729 + AT_rich Low_complexity Low_complexity 1 42 0 1 795 311 122 0 26 chr9 27625524 27625601 -96450571 + MT2A LTR ERVL 479 567 0 1 795 2487 157 83 18 chr9 27627792 27627997 -96448175 - RLTR12B LTR ERVK -2 526 307 1 795 246 32 0 0 chr9 27627997 27628028 -96448144 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 795 2487 157 83 18 chr9 27628028 27628316 -96447856 - RLTR12B LTR ERVK -222 306 2 1 795 354 61 0 0 chr9 27628342 27628391 -96447781 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 795 243 344 65 26 chr9 27629126 27629281 -96446891 + MIRc SINE MIR 29 189 -79 1 795 351 0 0 0 chr9 27630750 27630789 -96445383 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 795 792 241 74 11 chr9 27630789 27630978 -96445194 - B3 SINE B2 -15 201 1 1 795 479 333 38 10 chr9 27631366 27631575 -96444597 - Tigger5 DNA MER2_type -2172 234 20 1 795 191 317 98 24 chr9 27632366 27632489 -96443683 + MIRb SINE MIR 23 154 -114 1 795 914 320 37 42 chr9 27635939 27636395 -96439777 + Lx9 LINE L1 6949 7402 -242 1 795 183 298 0 0 chr9 27636966 27637023 -96439149 + MIR SINE MIR 119 175 -87 1 795 535 263 36 16 chr9 27637048 27637241 -96438931 - MER2 DNA MER2_type -63 282 86 1 795 218 316 10 48 chr9 27638819 27638922 -96437250 + ID_B1 SINE B4 78 176 -48 1 795 364 239 21 11 chr9 27638835 27638928 -96437244 + B1F1 SINE Alu 13 106 -43 1 795 828 216 0 7 chr9 27639060 27639209 -96436963 - B1_Mur4 SINE Alu -2 148 1 1 795 1270 236 44 7 chr9 27639625 27639920 -96436252 - MTD LTR MaLR -14 405 100 1 795 211 324 87 73 chr9 27641087 27641237 -96434935 - L2a LINE L2 -1 3425 3274 1 795 361 260 120 16 chr9 27641945 27642070 -96434102 - MER63B DNA AcHobo 0 436 299 1 795 2217 173 5 5 chr9 27642473 27642862 -96433310 + MTC LTR MaLR 33 421 0 1 795 2137 164 49 16 chr9 27642861 27643307 -96432865 + MTC-int LTR MaLR 2 462 -796 1 795 200 315 158 39 chr9 27643741 27644051 -96432121 - L2a LINE L2 -495 2924 2578 1 795 912 361 38 11 chr9 27644792 27645262 -96430910 + MER82 DNA MER2_type 157 639 -14 1 795 448 256 52 52 chr9 27646102 27646296 -96429876 - B3A SINE B2 -3 195 2 1 795 258 176 0 0 chr9 27646637 27646688 -96429484 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 795 888 259 14 19 chr9 27646810 27647019 -96429153 - B3 SINE B2 -6 210 3 1 795 281 281 0 53 chr9 27647199 27647293 -96428879 - PB1D10 SINE Alu -7 110 22 1 795 342 319 109 13 chr9 27648500 27648738 -96427434 - MT2A LTR ERVL -5 528 268 1 795 192 40 0 0 chr9 27650073 27650098 -96426074 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 795 311 309 56 96 chr9 27650827 27651024 -96425148 - MIRb SINE MIR -15 253 65 1 795 1272 184 9 9 chr9 27652174 27652399 -96423773 - URR1B DNA MER1_type 0 225 1 1 795 583 274 73 107 chr9 27652415 27652976 -96423196 + L1MA4 LINE L1 5325 5866 -434 1 795 188 0 74 0 chr9 27653032 27653059 -96423113 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 795 1192 301 42 63 chr9 27655037 27655512 -96420660 + Lx6 LINE L1 6966 7430 -30 1 796 1061 206 206 5 chr9 27659421 27659749 -96416423 + MTD LTR MaLR 26 385 -34 1 796 505 230 26 0 chr9 27661145 27661258 -96414914 + B1F SINE Alu 34 149 0 1 796 249 57 0 0 chr9 27662835 27662870 -96413302 + (T)n Simple_repeat Simple_repeat 1 35 0 1 796 2291 177 0 24 chr9 27662870 27663287 -96412885 + MTB_Mm LTR MaLR 1 407 0 1 796 346 295 74 94 chr9 27663622 27663824 -96412348 + B3A SINE B2 1 198 0 1 796 387 0 0 0 chr9 27664754 27664797 -96411375 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 796 904 304 25 29 chr9 27664854 27665135 -96411037 - B4A SINE B4 0 292 13 1 796 234 288 0 0 chr9 27665152 27665211 -96410961 + CT-rich Low_complexity Low_complexity 3 61 0 1 796 320 300 35 21 chr9 27666117 27666260 -96409912 - L1M4c LINE L1 -1017 5362 5218 1 796 408 88 0 0 chr9 27666556 27666613 -96409559 + (TCC)n Simple_repeat Simple_repeat 2 58 0 1 796 299 300 29 20 chr9 27666633 27666735 -96409437 - B1F SINE Alu -7 142 40 1 796 702 181 0 0 chr9 27666735 27666879 -96409293 + T-rich Low_complexity Low_complexity 1 144 0 1 796 1105 36 7 0 chr9 27666881 27667019 -96409153 - B1_Mus1 SINE Alu 0 148 10 2 796 438 277 91 66 chr9 27667056 27667411 -96408761 - L1M4c LINE L1 -1644 4732 4384 1 796 1143 70 0 0 chr9 27667411 27667554 -96408618 - B1_Mus2 SINE Alu -4 143 1 2 796 438 277 91 66 chr9 27667554 27667790 -96408382 - L1M4c LINE L1 -1993 4383 4126 1 796 271 297 100 33 chr9 27667953 27668193 -96407979 - L1M4c LINE L1 -2277 4105 3850 1 796 238 119 0 63 chr9 27668204 27668267 -96407905 + T-rich Low_complexity Low_complexity 2 60 0 2 796 1312 283 103 18 chr9 27668321 27669557 -96406615 - L1M4c LINE L1 -2579 3797 2404 1 796 354 343 54 89 chr9 27669559 27669783 -96406389 + MTEa LTR MaLR 1 216 -163 2 796 347 257 147 83 chr9 27669668 27669825 -96406347 + MLT2B5 LTR ERVL 134 300 -301 2 796 402 287 56 0 chr9 27669847 27669955 -96406217 + PB1D10 SINE Alu 3 116 -1 2 796 849 305 25 11 chr9 27669957 27670239 -96405933 + B4A SINE B4 1 286 -6 2 796 392 258 0 0 chr9 27670446 27670535 -96405637 + Ricksha_c DNA MuDR 757 845 -1203 2 796 794 45 0 9 chr9 27670668 27670780 -96405392 + (TC)n Simple_repeat Simple_repeat 2 112 0 2 796 576 285 95 34 chr9 27670812 27671222 -96404950 - L1M4c LINE L1 -4506 1878 1444 1 796 321 296 77 59 chr9 27671690 27672013 -96404159 - L1M4c LINE L1 -5224 1160 832 1 796 398 272 58 33 chr9 27673232 27673386 -96402786 - Lx5 LINE L1 -5 7053 6873 2 796 6142 164 23 19 chr9 27673382 27674993 -96401179 - Lx5 LINE L1 -695 6355 4726 2 796 22 56 0 0 chr9 27675457 27675493 -96400679 + AT_rich Low_complexity Low_complexity 1 36 0 2 796 199 307 13 13 chr9 27676043 27676119 -96400053 + L3 LINE CR1 4413 4488 -1 2 796 216 67 0 0 chr9 27676838 27676868 -96399304 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 796 185 333 57 11 chr9 27677253 27677341 -96398831 - MIR3 SINE MIR -41 167 76 2 796 234 291 36 0 chr9 27678766 27678821 -96397351 + B4A SINE B4 87 143 -149 2 796 443 252 50 0 chr9 27678776 27678875 -96397297 + PB1D10 SINE Alu 14 117 0 2 796 450 0 0 0 chr9 27679156 27679206 -96396966 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 796 370 351 140 20 chr9 27679581 27679938 -96396234 - MLT1L LTR MaLR -65 545 146 2 796 293 330 123 50 chr9 27679939 27680159 -96396013 + MLT1C LTR MaLR 1 236 -231 2 796 597 152 0 0 chr9 27680237 27680375 -96395797 + GA-rich Low_complexity Low_complexity 1 138 0 2 796 452 250 73 29 chr9 27681110 27681246 -96394926 - B1F SINE Alu -4 145 4 2 796 226 239 0 0 chr9 27681259 27681305 -96394867 + MLT1C LTR MaLR 345 390 0 2 796 732 168 0 0 chr9 27681662 27681811 -96394361 + (CAGAGA)n Simple_repeat Simple_repeat 1 149 0 2 796 389 70 0 17 chr9 27681827 27681885 -96394287 + (GAAA)n Simple_repeat Simple_repeat 3 59 0 2 796 192 152 0 0 chr9 27682018 27682051 -96394121 + (CATA)n Simple_repeat Simple_repeat 3 35 0 2 796 398 279 136 13 chr9 27682244 27682561 -96393611 + L1MB7 LINE L1 4809 5165 -981 2 796 249 262 61 8 chr9 27682659 27682790 -96393382 + L1MB7 LINE L1 5320 5458 -722 2 796 297 176 44 0 chr9 27682915 27682983 -96393189 - MTD LTR MaLR -4 415 345 2 796 2400 188 21 28 chr9 27682989 27683454 -96392718 + MT2A LTR ERVL 1 462 -71 2 796 1195 241 108 10 chr9 27683486 27683783 -96392389 - MTD LTR MaLR -80 339 14 2 796 422 323 122 44 chr9 27683793 27684415 -96391757 + L1MB7 LINE L1 5482 6162 -2 2 796 272 220 0 0 chr9 27685201 27685251 -96390921 - MIR SINE MIR -92 170 121 2 796 1014 221 125 3 chr9 27685280 27685584 -96390588 + L1MA6 LINE L1 5689 6029 -271 2 796 1598 217 90 13 chr9 27685966 27686353 -96389819 - MTD LTR MaLR 0 419 3 2 796 3790 259 21 77 chr9 27686353 27687567 -96388605 - MTD-int LTR MaLR -9 1249 105 2 796 21 71 0 0 chr9 27688194 27688236 -96387936 + AT_rich Low_complexity Low_complexity 1 42 0 2 796 393 356 68 47 chr9 27688534 27688931 -96387241 - L1MC4a LINE L1 -2028 5854 5460 2 796 277 235 0 19 chr9 27689358 27689410 -96386762 - B4A SINE B4 -238 54 4 2 796 359 307 0 0 chr9 27689616 27689691 -96386481 - PB1D10 SINE Alu -42 75 1 2 796 708 12 0 0 chr9 27690166 27690247 -96385925 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 2 796 489 274 0 0 chr9 27690898 27691000 -96385172 - B4A SINE B4 -1 291 190 2 796 210 143 0 0 chr9 27691309 27691344 -96384828 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 2 796 302 311 96 22 chr9 27691671 27691806 -96384366 - MER21B LTR ERV1 -124 739 595 2 796 577 191 76 4 chr9 27691974 27692142 -96384030 - ORR1C2 LTR MaLR 0 384 177 2 796 637 203 21 57 chr9 27692389 27692530 -96383642 - B3 SINE B2 -80 136 1 2 796 1607 165 4 8 chr9 27692586 27692849 -96383323 + RLTR13C1 LTR ERVK 1 262 -721 2 796 3027 102 75 30 chr9 27692832 27693339 -96382833 + RLTR13C1 LTR ERVK 454 983 0 2 796 435 311 92 5 chr9 27693342 27693526 -96382646 - MER21B LTR ERV1 -606 257 58 2 796 435 19 0 0 chr9 27694261 27694313 -96381859 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 796 301 109 65 0 chr9 27694672 27694718 -96381454 - HAL1-3A_ME LINE L1 -836 2022 1974 2 796 269 345 0 68 chr9 27694721 27694839 -96381333 - B4A SINE B4 -2 290 181 2 796 286 342 0 17 chr9 27695305 27695421 -96380751 - ID4 SINE ID -37 115 2 2 796 290 291 82 2 chr9 27696519 27696617 -96379555 - MIR SINE MIR -110 158 55 2 796 918 247 9 5 chr9 27697935 27698159 -96378013 - Tigger12 DNA MER2_type -4 1955 1731 2 796 269 125 0 18 chr9 27700667 27700724 -96375448 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 2 796 384 299 135 22 chr9 27701499 27701677 -96374495 - B3A SINE B2 0 198 1 2 796 286 159 70 28 chr9 27702596 27702667 -96373505 + L1M2 LINE L1 5711 5784 -507 2 796 250 284 22 8 chr9 27703613 27703715 -96372457 - MTE2b LTR MaLR -10 349 264 2 796 36 23 0 0 chr9 27703913 27703956 -96372216 + AT_rich Low_complexity Low_complexity 1 43 0 2 796 1328 28 22 17 chr9 27703956 27704137 -96372035 - L1Md_F3 LINE L1 -3 6581 6400 2 796 209 247 55 0 chr9 27704580 27704653 -96371519 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 2 796 854 171 14 7 chr9 27704807 27704954 -96371218 + B1_Mur4 SINE Alu 2 149 -1 2 796 1202 100 0 6 chr9 27704957 27705138 -96371034 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 796 314 156 16 0 chr9 27705141 27705205 -96370967 + GA-rich Low_complexity Low_complexity 4 68 0 2 796 523 380 39 20 chr9 27705299 27705503 -96370669 - ID_B1 SINE B4 -9 215 8 2 796 1024 241 5 10 chr9 27705547 27705748 -96370424 - B3 SINE B2 -14 202 3 2 796 242 308 13 0 chr9 27706945 27707023 -96369149 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 796 1036 283 30 8 chr9 27707034 27707301 -96368871 - B4 SINE B4 -18 274 2 2 796 369 0 0 0 chr9 27707696 27707737 -96368435 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 796 30 0 0 0 chr9 27707862 27707892 -96368280 + AT_rich Low_complexity Low_complexity 1 30 0 2 796 189 107 0 0 chr9 27707979 27708007 -96368165 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2 796 271 333 114 33 chr9 27708732 27708943 -96367229 - MER110A LTR ERV1 -7 461 234 2 796 2875 48 0 11 chr9 27709000 27709381 -96366791 + L1Md_F2 LINE L1 6183 6559 -23 2 796 216 0 0 0 chr9 27709381 27709405 -96366767 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 796 25 75 0 0 chr9 27709452 27709505 -96366667 + AT_rich Low_complexity Low_complexity 1 53 0 2 796 233 236 96 14 chr9 27709537 27709610 -96366562 - MER110A LTR ERV1 -306 162 84 2 796 1446 289 30 5 chr9 27709614 27710018 -96366154 + MTD LTR MaLR 6 419 0 2 796 1029 331 58 38 chr9 27710116 27710243 -96365929 - Lx9 LINE L1 0 7473 7328 2 796 252 0 0 0 chr9 27710243 27710271 -96365901 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 796 1380 299 18 26 chr9 27710271 27710827 -96365345 - Lx9 LINE L1 -206 7438 6776 2 796 909 237 76 51 chr9 27710824 27711100 -96365072 + Lx6 LINE L1 7040 7322 -138 2 796 2653 231 80 97 chr9 27711300 27711892 -96364280 - L1_Rod LINE L1 -62 5785 5250 2 796 189 0 0 0 chr9 27711892 27711913 -96364259 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2 796 2653 231 80 97 chr9 27711913 27712572 -96363600 - L1_Rod LINE L1 -598 5249 4556 2 796 229 314 102 24 chr9 27713543 27713670 -96362502 + MLT1A1 LTR MaLR 272 408 0 2 796 22 56 0 0 chr9 27714740 27714776 -96361396 + AT_rich Low_complexity Low_complexity 1 36 0 2 796 746 305 59 51 chr9 27714998 27715354 -96360818 - MLT2D LTR ERVL -55 359 1 2 796 335 306 58 17 chr9 27715724 27715897 -96360275 + L1M5 LINE L1 4447 4626 -1520 2 796 301 221 35 11 chr9 27716026 27716113 -96360059 + B1F SINE Alu 9 97 -52 2 796 414 0 0 0 chr9 27716381 27716427 -96359745 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 796 1025 39 8 0 chr9 27717868 27717998 -96358174 + (TC)n Simple_repeat Simple_repeat 2 132 0 2 796 186 150 0 0 chr9 27718001 27718041 -96358131 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 796 523 247 120 10 chr9 27718890 27719082 -96357090 + Lx9 LINE L1 7370 7582 -62 2 796 2283 191 30 9 chr9 27719085 27719518 -96356654 - RMER4A LTR ERVK 0 466 25 2 796 1791 114 25 64 chr9 27719518 27719845 -96356327 + Lx2 LINE L1 6571 6884 -113 2 796 3240 130 34 51 chr9 27719845 27720468 -96355704 - RLTR26 LTR ERVK 0 642 1 2 796 513 155 19 10 chr9 27720468 27720572 -96355600 + Lx2B LINE L1 6878 6982 -18 2 796 225 0 0 0 chr9 27720710 27720735 -96355437 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 796 283 274 10 21 chr9 27720998 27721095 -96355077 + MLT1A1 LTR MaLR 313 408 0 2 796 1235 329 128 7 chr9 27721095 27721809 -96354363 - MER63C DNA AcHobo -99 831 29 2 796 322 333 13 39 chr9 27722501 27722657 -96353515 + MIR SINE MIR 50 202 -66 2 796 3706 135 18 8 chr9 27722999 27723626 -96352546 + L1_Mur1 LINE L1 3295 3927 -1959 2 796 1067 340 28 40 chr9 27723699 27724275 -96351897 + Lx7 LINE L1 6763 7331 -365 2 796 234 279 49 42 chr9 27724256 27724398 -96351774 + Lx7 LINE L1 7535 7677 -19 2 796 342 341 75 21 chr9 27724533 27724719 -96351453 + MLT1B LTR MaLR 187 382 -8 2 796 248 350 29 29 chr9 27725514 27725617 -96350555 - MLT1E2 LTR MaLR -220 460 358 2 796 319 336 43 73 chr9 27725675 27725839 -96350333 - MLT1E2 LTR MaLR -418 209 51 2 796 271 373 99 81 chr9 27728000 27728283 -96347889 + LTR33 LTR ERVL 77 364 -151 2 796 208 244 69 58 chr9 27728704 27728791 -96347381 + MIRc SINE MIR 128 215 -53 2 796 963 192 159 0 chr9 27730548 27730730 -96345442 - B3 SINE B2 -5 211 1 2 796 478 304 0 0 chr9 27730929 27731031 -96345141 + RSINE1 SINE B4 4 105 -60 2 796 423 119 0 0 chr9 27731061 27731128 -96345044 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 796 1174 173 114 0 chr9 27731162 27731364 -96344808 + URR1A DNA MER1_type 2 226 0 3 796 187 316 23 81 chr9 27732211 27732297 -96343875 - MER5A DNA MER1_type -85 104 24 3 796 219 88 0 0 chr9 27735662 27735696 -96340476 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 796 546 280 174 43 chr9 27735944 27736265 -96339907 + MLT1C LTR MaLR 76 438 -29 3 796 289 234 39 0 chr9 27737142 27737219 -96338953 - L1M2 LINE L1 -1357 4786 4707 3 796 189 254 77 31 chr9 27737344 27737409 -96338763 - MIR SINE MIR -164 98 31 3 796 188 111 28 0 chr9 27737424 27737460 -96338712 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 796 614 126 17 28 chr9 27737460 27737639 -96338533 + GA-rich Low_complexity Low_complexity 1 177 0 3 796 261 72 35 35 chr9 27739480 27739538 -96336634 + (CAAAAA)n Simple_repeat Simple_repeat 4 61 0 3 796 671 246 66 139 chr9 27739554 27739828 -96336344 - MTE2a LTR MaLR -125 254 1 3 796 1188 259 16 83 chr9 27739880 27740254 -96335918 + MTE2a LTR MaLR 31 379 0 3 796 186 43 0 0 chr9 27740258 27740281 -96335891 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3 796 1192 82 0 14 chr9 27740519 27740667 -96335505 - B1_Mm SINE Alu 0 147 2 3 796 508 161 11 11 chr9 27740667 27740761 -96335411 - L1MB3 LINE L1 -32 6151 6058 3 796 817 119 5 48 chr9 27741381 27741567 -96334605 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 3 796 228 347 27 0 chr9 27741814 27741889 -96334283 + ID4 SINE ID 6 82 -1 3 796 214 396 20 10 chr9 27742026 27742166 -96334006 - MIRb SINE MIR -37 171 36 3 796 235 359 46 19 chr9 27742813 27742921 -96333251 - RMER12 LTR ERVK -485 837 727 3 796 630 324 33 82 chr9 27743250 27743580 -96332592 + L4 LINE RTE 1510 1823 -206 3 796 218 368 80 11 chr9 27743880 27744056 -96332116 + MIRb SINE MIR 52 239 -29 3 796 256 204 152 19 chr9 27744203 27744308 -96331864 - Lx8 LINE L1 -2 7471 7353 3 796 4028 69 2 0 chr9 27744314 27744793 -96331379 - L1_Mus2 LINE L1 -1 6565 6086 3 796 212 146 49 0 chr9 27744811 27744852 -96331320 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 796 488 77 0 0 chr9 27747560 27747625 -96328547 - ORR1A2 LTR MaLR 0 327 263 3 796 499 123 0 0 chr9 27747623 27747696 -96328476 - ORR1A2 LTR MaLR -247 80 8 3 796 881 120 7 0 chr9 27749571 27749713 -96326459 + (GAA)n Simple_repeat Simple_repeat 1 143 0 3 796 1666 159 81 19 chr9 27750011 27750383 -96325789 - RMER17C LTR ERVK 0 410 16 3 796 7041 40 0 0 chr9 27755588 27756383 -96319789 + L1Md_A LINE L1 5787 6581 -1 3 796 263 71 24 0 chr9 27757400 27757442 -96318730 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 796 683 322 47 101 chr9 27757468 27757765 -96318407 - B4A SINE B4 -10 282 2 3 796 501 17 0 0 chr9 27758168 27758226 -96317946 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 796 234 0 0 0 chr9 27758528 27758554 -96317618 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 796 361 341 54 39 chr9 27759740 27759999 -96316173 - L1ME1 LINE L1 -77 6102 5840 3 796 255 161 0 0 chr9 27760034 27760090 -96316082 + CT-rich Low_complexity Low_complexity 1 56 0 3 796 299 78 0 19 chr9 27760090 27760142 -96316030 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 796 333 0 0 0 chr9 27760142 27760178 -96315994 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 796 537 197 197 0 chr9 27760178 27760300 -96315872 - B3A SINE B2 -49 149 4 3 796 335 241 58 41 chr9 27760320 27760441 -96315731 - L1ME1 LINE L1 -439 5740 5618 3 796 334 304 12 42 chr9 27761480 27761648 -96314524 - MIRc SINE MIR -3 265 103 3 796 456 72 0 0 chr9 27761888 27761957 -96314215 + (TCTG)n Simple_repeat Simple_repeat 4 72 0 3 796 1227 68 0 0 chr9 27762536 27762683 -96313489 + B1_Mus2 SINE Alu 1 147 0 3 796 204 40 0 0 chr9 27762683 27762708 -96313464 + (A)n Simple_repeat Simple_repeat 1 25 0 3 796 2014 162 109 2 chr9 27765002 27765441 -96310731 - RLTR28 LTR ERVL -16 508 23 3 796 570 146 0 0 chr9 27765719 27765815 -96310357 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 3 796 378 328 40 28 chr9 27765970 27766165 -96310007 + MLT1A0 LTR MaLR 157 354 -11 3 796 674 366 42 42 chr9 27766394 27766725 -96309447 + MLT1A0 LTR MaLR 35 365 0 3 796 192 97 0 0 chr9 27768595 27768626 -96307546 + (T)n Simple_repeat Simple_repeat 1 31 0 3 796 360 0 0 0 chr9 27769558 27769598 -96306574 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 796 423 274 44 0 chr9 27769599 27769712 -96306460 - B1F SINE Alu -8 141 24 3 796 459 0 0 0 chr9 27771505 27771556 -96304616 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 796 198 0 0 0 chr9 27771556 27771577 -96304595 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 796 246 221 29 0 chr9 27771584 27771652 -96304520 + Lx9 LINE L1 7569 7638 -6 3 796 217 210 81 0 chr9 27771961 27772023 -96304149 - MIRb SINE MIR -150 118 52 3 796 300 280 14 96 chr9 27773286 27773361 -96302811 - Helitron2Na_Mam RC Helitron? -42 282 214 3 796 2559 158 26 14 chr9 27773361 27773777 -96302395 - MTC LTR MaLR 0 421 1 3 796 300 280 14 96 chr9 27773777 27773847 -96302325 - Helitron2Na_Mam RC Helitron? -111 213 149 3 796 393 267 95 0 chr9 27774131 27774236 -96301936 - Helitron2Na_Mam RC Helitron? -209 115 1 3 796 334 255 10 58 chr9 27774566 27774670 -96301502 + PB1D10 SINE Alu 19 117 0 3 796 448 249 0 12 chr9 27774881 27774991 -96301181 + PB1D7 SINE Alu 3 107 -13 3 796 345 271 0 85 chr9 27775397 27775550 -96300622 + HAL1-2a_MD LINE L1 2342 2481 -543 3 796 237 139 0 0 chr9 27776654 27776697 -96299475 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 3 796 795 190 28 14 chr9 27776755 27776899 -96299273 + B1_Mus2 SINE Alu 2 147 0 3 796 606 93 0 0 chr9 27777498 27777584 -96298588 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 796 231 260 0 25 chr9 27777750 27777829 -96298343 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 796 508 316 157 37 chr9 27778062 27778294 -96297878 - L2 LINE L2 -1046 2373 2109 3 796 472 329 110 22 chr9 27778294 27778611 -96297561 + MER2 DNA MER2_type 1 345 0 3 796 508 316 157 37 chr9 27778611 27778812 -96297360 - L2 LINE L2 -1311 2108 1888 3 796 250 297 0 0 chr9 27778945 27779009 -96297163 - L3 LINE CR1 -158 4331 4268 3 796 228 266 120 47 chr9 27779190 27779340 -96296832 - MLT1A1 LTR MaLR 0 408 248 3 796 2407 138 115 13 chr9 27780894 27781276 -96294896 + MTC LTR MaLR 1 421 0 3 796 3067 30 0 3 chr9 27782075 27782413 -96293759 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 99 57383 16 12 7 chr9 27782413 27788856 -96287316 + IAPEz-int LTR ERVK 8 6481 0 3 797 3067 30 0 3 chr9 27788856 27789194 -96286978 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 797 302 263 12 33 chr9 27789364 27789470 -96286702 - L2c LINE L2 -38 3349 3258 3 797 1802 269 29 48 chr9 27790837 27791383 -96284789 - Lx8 LINE L1 -377 7096 6561 3 797 597 307 100 75 chr9 27791418 27791777 -96284395 + Lx8 LINE L1 7106 7473 0 3 797 207 380 94 31 chr9 27792628 27792978 -96283194 + L3 LINE CR1 3919 4290 -199 3 797 306 177 0 46 chr9 27796731 27796796 -96279376 + Lx6 LINE L1 7206 7267 -193 3 797 261 163 0 0 chr9 27796810 27796859 -96279313 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 797 422 325 64 17 chr9 27796906 27797078 -96279094 + B3A SINE B2 1 180 -18 3 797 1214 44 0 0 chr9 27797149 27797285 -96278887 - B1_Mus2 SINE Alu -10 137 2 3 797 27 29 0 0 chr9 27797293 27797327 -96278845 + AT_rich Low_complexity Low_complexity 1 34 0 3 797 182 37 37 0 chr9 27797366 27797393 -96278779 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 797 283 57 37 19 chr9 27797394 27797448 -96278724 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 3 797 367 297 148 5 chr9 27798214 27798410 -96277762 + MIR SINE MIR 28 251 -11 3 797 189 0 0 0 chr9 27799659 27799680 -96276492 + (A)n Simple_repeat Simple_repeat 1 21 0 3 797 510 17 0 0 chr9 27800246 27800305 -96275867 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 797 312 343 98 6 chr9 27801602 27801775 -96274397 + MER20 DNA MER1_type 7 195 -24 3 797 295 290 0 0 chr9 27802446 27802515 -96273657 + ID4_ SINE ID 4 72 -11 3 797 510 17 0 0 chr9 27802516 27802575 -96273597 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 3 797 909 236 51 0 chr9 27803018 27803213 -96272959 - B3 SINE B2 -2 214 10 3 797 297 109 0 0 chr9 27804481 27804527 -96271645 + (CAGA)n Simple_repeat Simple_repeat 4 49 0 3 797 486 0 0 0 chr9 27805377 27805431 -96270741 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 797 1074 231 91 4 chr9 27805532 27805784 -96270388 + MTD LTR MaLR 146 419 0 3 797 198 128 0 0 chr9 27805854 27805893 -96270279 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 797 263 293 26 0 chr9 27807644 27807748 -96268424 - L2a LINE L2 0 3426 3266 3 797 1418 255 54 34 chr9 27808879 27809325 -96266847 + RMER5 LTR ERV1 71 525 -9 3 797 284 342 0 0 chr9 27809386 27809506 -96266666 + (CATA)n Simple_repeat Simple_repeat 3 122 0 3 797 290 286 92 71 chr9 27810418 27810614 -96265558 - MIRb SINE MIR -32 236 37 3 797 300 70 0 0 chr9 27812056 27812099 -96264073 + (A)n Simple_repeat Simple_repeat 1 43 0 3 797 368 328 0 116 chr9 27812100 27812238 -96263934 + RSINE1 SINE B4 35 156 -9 3 797 271 350 129 5 chr9 27812307 27812500 -96263672 - MER31A LTR ERV1 -123 362 146 3 797 292 265 50 20 chr9 27812514 27812614 -96263558 - MER31A LTR ERV1 -382 103 1 3 797 344 233 90 49 chr9 27812755 27812877 -96263295 + MIR SINE MIR 67 193 -75 3 797 192 77 0 0 chr9 27813125 27813151 -96263021 + (TGG)n Simple_repeat Simple_repeat 1 26 0 3 797 369 0 0 0 chr9 27813157 27813198 -96262974 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 797 229 344 0 0 chr9 27813198 27813262 -96262910 - ID4 SINE ID -12 71 8 3 797 26 0 0 0 chr9 27813424 27813450 -96262722 + AT_rich Low_complexity Low_complexity 1 26 0 4 797 3510 179 36 17 chr9 27813600 27813785 -96262387 - RLTR25A LTR ERVK -231 872 694 4 797 208 0 62 0 chr9 27813785 27813817 -96262355 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 797 3510 179 36 17 chr9 27813817 27814326 -96261846 - RLTR25A LTR ERVK -410 693 167 4 797 395 233 67 0 chr9 27814351 27814441 -96261731 - RLTR25A LTR ERVK -932 96 1 4 797 315 267 52 46 chr9 27814647 27814843 -96261329 - Lx5 LINE L1 -1035 5973 5783 4 797 252 147 26 13 chr9 27814898 27814974 -96261198 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 797 260 169 16 33 chr9 27816658 27816719 -96259453 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 797 189 206 20 40 chr9 27816732 27816833 -96259339 + (CATATA)n Simple_repeat Simple_repeat 1 99 0 4 797 284 268 46 35 chr9 27816890 27817064 -96259108 + (CATA)n Simple_repeat Simple_repeat 4 179 0 4 797 219 250 0 0 chr9 27817645 27817689 -96258483 + CT-rich Low_complexity Low_complexity 2 45 0 4 797 468 0 0 0 chr9 27817692 27817744 -96258428 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 797 315 351 58 125 chr9 27817917 27818246 -96257926 - MLT1D LTR MaLR -9 496 190 4 797 260 255 0 0 chr9 27818475 27818522 -96257650 + MIRb SINE MIR 26 72 -196 4 797 602 60 12 0 chr9 27819692 27819775 -96256397 + (TA)n Simple_repeat Simple_repeat 1 84 0 4 797 510 96 0 0 chr9 27821189 27821262 -96254910 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 4 797 1937 79 14 0 chr9 27821410 27821677 -96254495 - L1_Mus2 LINE L1 -490 6076 5790 4 797 3923 62 38 0 chr9 27821677 27822147 -96254025 + L1_Mus2 LINE L1 6079 6566 0 4 797 405 267 93 7 chr9 27822147 27822159 -96254013 - L1_Mus2 LINE L1 -1671 5789 5778 4 797 2007 180 90 15 chr9 27822229 27822619 -96253553 - MTD LTR MaLR 0 419 1 4 797 325 341 8 0 chr9 27822875 27823007 -96253165 + L2 LINE L2 2321 2453 -966 4 797 1423 261 100 10 chr9 27823289 27823869 -96252303 - L1MC4a LINE L1 -154 7728 7097 4 797 270 115 0 0 chr9 27824287 27824339 -96251833 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 797 501 17 0 0 chr9 27824402 27824460 -96251712 + (TTA)n Simple_repeat Simple_repeat 2 59 0 4 797 246 227 0 0 chr9 27824519 27824563 -96251609 - ID4 SINE ID -31 52 9 4 797 691 259 105 48 chr9 27824655 27824987 -96251185 - L1MC4a LINE L1 -1179 6703 6353 4 797 223 368 38 31 chr9 27825101 27825261 -96250911 + L2 LINE L2 2806 2966 -453 4 797 234 282 63 13 chr9 27825640 27825719 -96250453 - MTEb LTR MaLR -14 365 283 4 797 477 277 0 26 chr9 27827108 27827223 -96248949 + PB1D10 SINE Alu 6 117 0 4 797 240 35 0 0 chr9 27828895 27828924 -96247248 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 797 560 174 8 0 chr9 27829312 27829433 -96246739 + (TA)n Simple_repeat Simple_repeat 2 123 0 4 797 1199 300 81 21 chr9 27829526 27829592 -96246580 - Lx8 LINE L1 -655 6989 6924 4 797 2043 108 36 13 chr9 27829592 27829893 -96246279 + L1_Mus4 LINE L1 6328 6635 -1 4 797 956 75 0 7 chr9 27829903 27830038 -96246134 + (GAAAA)n Simple_repeat Simple_repeat 2 135 0 4 797 1224 267 64 23 chr9 27830038 27830433 -96245739 - Lx8 LINE L1 -743 6901 6347 4 797 186 71 0 0 chr9 27831709 27831737 -96244435 + (TTG)n Simple_repeat Simple_repeat 1 28 0 4 797 2575 138 55 50 chr9 27833221 27833680 -96242492 - RMER6B LTR ERVK 0 461 1 4 797 608 182 9 43 chr9 27833681 27833743 -96242429 - RMER6B LTR ERVK -350 111 54 4 797 180 0 0 0 chr9 27833743 27833763 -96242409 + (GTTTG)n Simple_repeat Simple_repeat 1 20 0 4 797 608 182 9 43 chr9 27833763 27833815 -96242357 - RMER6B LTR ERVK -408 53 1 4 797 1049 57 7 0 chr9 27835558 27835699 -96240473 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 4 797 578 135 10 0 chr9 27836411 27836515 -96239657 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 797 270 0 0 0 chr9 27837612 27837642 -96238530 + (A)n Simple_repeat Simple_repeat 1 30 0 4 797 949 256 53 66 chr9 27838190 27838570 -96237602 - LTR37A LTR ERV1 -26 400 26 4 797 243 343 39 48 chr9 27840486 27840590 -96235582 - B4 SINE B4 -188 104 2 4 797 450 229 9 54 chr9 27840605 27840716 -96235456 - PB1D10 SINE Alu -8 109 4 4 797 243 262 0 16 chr9 27841896 27841958 -96234214 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 797 202 303 52 13 chr9 27844283 27844360 -96231812 - MER5B DNA MER1_type -78 100 21 4 797 1227 181 9 9 chr9 27845437 27845649 -96230523 - B3 SINE B2 -2 214 3 4 797 878 179 14 0 chr9 27845744 27845884 -96230288 - B1_Mur3 SINE Alu -7 142 1 4 797 423 0 0 0 chr9 27850312 27850359 -96225813 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 797 23 0 0 0 chr9 27851805 27851828 -96224344 + AT_rich Low_complexity Low_complexity 1 23 0 4 797 187 93 23 23 chr9 27852640 27852684 -96223488 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 797 225 274 65 0 chr9 27853600 27853662 -96222510 + ID4_ SINE ID 4 69 -14 4 797 1788 113 156 44 chr9 27854364 27854659 -96221513 - ORR1A4 LTR MaLR 0 329 2 4 797 270 0 0 0 chr9 27855317 27855347 -96220825 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 797 697 40 10 39 chr9 27855347 27855439 -96220733 - B1_Mus2 SINE Alu -10 137 47 4 797 236 203 14 111 chr9 27855384 27855456 -96220716 - MT2B2 LTR ERVL -327 257 193 4 797 297 0 0 0 chr9 27855857 27855890 -96220282 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 797 256 229 0 0 chr9 27856171 27856219 -96219953 - RSINE1 SINE B4 -114 51 4 4 797 469 316 342 10 chr9 27858701 27859082 -96217090 + MER44B DNA MER2_type 32 539 -11 4 797 225 0 0 0 chr9 27859359 27859384 -96216788 + (TTA)n Simple_repeat Simple_repeat 2 26 0 4 797 347 269 48 9 chr9 27859583 27859688 -96216484 - PB1D10 SINE Alu -4 113 5 4 797 216 0 0 0 chr9 27860374 27860398 -96215774 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 797 2114 238 13 61 chr9 27860400 27860924 -96215248 - RMER15 LTR ERVL -50 525 27 4 797 314 273 11 0 chr9 27861428 27861516 -96214656 - MIR3 SINE MIR 0 208 120 4 797 1418 194 121 7 chr9 27862290 27862596 -96213576 + MTD LTR MaLR 1 341 -78 4 797 2519 85 20 8 chr9 27862728 27863083 -96213089 + L1_Mus4 LINE L1 6276 6634 -2 4 797 197 361 75 46 chr9 27864429 27864603 -96211569 - MIRb SINE MIR -16 252 74 4 797 404 277 42 59 chr9 27864892 27865011 -96211161 - MIRb SINE MIR -145 123 7 4 797 1876 183 25 30 chr9 27865483 27865915 -96210257 - MTB_Mm LTR MaLR -8 413 1 4 797 279 0 0 0 chr9 27866312 27866343 -96209829 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 797 1839 236 22 17 chr9 27866830 27867240 -96208932 - Lx6 LINE L1 -4 7456 7045 4 797 26 0 0 0 chr9 27867789 27867815 -96208357 + AT_rich Low_complexity Low_complexity 1 26 0 4 797 3474 290 61 25 chr9 27867922 27869089 -96207083 - Lx8 LINE L1 -167 7306 6098 4 797 765 270 30 27 chr9 27869106 27869369 -96206803 + Lx8 LINE L1 5429 5692 -155 4 797 9168 132 32 1 chr9 27869372 27871408 -96204764 + Lx2 LINE L1 4908 6997 0 4 797 552 215 79 37 chr9 27871403 27871567 -96204605 + Lx8 LINE L1 5712 5908 -1565 4 797 224 310 22 44 chr9 27871861 27871996 -96204176 - MIRc SINE MIR -17 251 120 4 797 36 0 0 0 chr9 27872033 27872069 -96204103 + AT_rich Low_complexity Low_complexity 1 36 0 4 797 1235 62 0 0 chr9 27874206 27874352 -96201820 - B1_Mus1 SINE Alu -1 147 2 4 797 288 351 69 12 chr9 27874827 27875000 -96201172 + MIR SINE MIR 52 234 -28 4 797 360 289 34 42 chr9 27877067 27877141 -96199031 + MER63B DNA AcHobo 313 387 -49 4 797 183 80 0 0 chr9 27877141 27877166 -96199006 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 797 360 289 34 42 chr9 27877166 27877210 -96198962 + MER63B DNA AcHobo 388 430 -6 4 797 21 0 0 0 chr9 27877229 27877250 -96198922 + AT_rich Low_complexity Low_complexity 1 21 0 4 797 1235 76 0 0 chr9 27877329 27877474 -96198698 + B1_Mus2 SINE Alu 3 147 0 4 797 383 274 112 58 chr9 27878143 27878376 -96197796 - MIR SINE MIR -11 251 17 4 797 201 74 0 0 chr9 27878630 27878657 -96197515 + (TTA)n Simple_repeat Simple_repeat 2 28 0 4 797 938 234 47 5 chr9 27878910 27879125 -96197047 - URR1A DNA MER1_type -2 224 1 4 797 318 167 0 0 chr9 27880224 27880284 -96195888 + GA-rich Low_complexity Low_complexity 3 62 0 4 797 291 54 0 0 chr9 27880624 27880661 -96195511 + (TTG)n Simple_repeat Simple_repeat 3 39 0 4 797 405 0 0 0 chr9 27882123 27882168 -96194004 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 797 306 232 100 44 chr9 27882176 27882266 -96193906 - B4A SINE B4 -41 251 157 4 797 220 241 24 48 chr9 27883721 27883804 -96192368 + CT-rich Low_complexity Low_complexity 3 83 0 4 797 280 221 152 25 chr9 27885376 27885455 -96190717 + MLT1A1 LTR MaLR 264 352 -56 4 797 440 325 6 54 chr9 27885455 27885621 -96190551 + B4A SINE B4 2 159 -133 4 797 537 30 0 0 chr9 27885665 27885732 -96190440 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 797 187 333 85 43 chr9 27886164 27886258 -96189914 + L2 LINE L2 2683 2780 -639 4 797 567 0 0 0 chr9 27886451 27886514 -96189658 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 797 745 254 0 14 chr9 27886781 27886925 -96189247 + RSINE1 SINE B4 3 144 -21 4 797 322 232 59 20 chr9 27887021 27887122 -96189050 - MTEb LTR MaLR 0 379 275 4 797 195 42 0 0 chr9 27889000 27889024 -96187148 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 797 333 0 0 0 chr9 27889499 27889536 -96186636 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 797 327 274 0 31 chr9 27890107 27890205 -96185967 + MLT1A1 LTR MaLR 314 408 0 4 797 195 278 0 18 chr9 27890278 27890333 -96185839 + MIRc SINE MIR 46 99 -169 4 797 267 282 14 14 chr9 27890900 27890972 -96185200 - ID4_ SINE ID -10 73 2 4 797 294 137 0 0 chr9 27892681 27892732 -96183440 - Tigger5 DNA MER2_type -162 2244 2194 4 797 447 294 61 20 chr9 27892829 27893027 -96183145 - Tigger5 DNA MER2_type -2141 265 60 4 797 513 309 77 39 chr9 27893642 27893928 -96182244 - MER33 DNA MER1_type -27 297 1 4 797 2145 203 23 6 chr9 27895509 27895979 -96180193 + RMER5 LTR ERV1 49 526 -8 4 797 460 258 46 15 chr9 27896057 27896187 -96179985 - B1F SINE Alu -15 134 1 5 797 709 253 91 62 chr9 27897457 27897777 -96178395 - MTEb LTR MaLR -8 371 43 5 797 303 333 0 45 chr9 27898349 27898459 -96177713 + PB1D10 SINE Alu 10 114 -3 5 797 685 319 34 54 chr9 27898505 27898856 -96177316 - MER34A LTR ERV1 -194 348 5 5 797 1275 61 0 0 chr9 27899458 27899720 -96176452 + (CA)n Simple_repeat Simple_repeat 1 262 0 5 797 250 80 40 0 chr9 27902121 27902171 -96174001 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 797 336 24 0 0 chr9 27902637 27902678 -96173494 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 797 225 178 22 0 chr9 27903473 27903518 -96172654 + C-rich Low_complexity Low_complexity 3 48 0 5 797 219 69 0 0 chr9 27904183 27904212 -96171960 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 797 388 256 25 25 chr9 27904229 27904349 -96171823 - B4A SINE B4 -172 120 1 5 797 2184 254 29 27 chr9 27904437 27904999 -96171173 + Lx7 LINE L1 6835 7397 -299 5 797 295 179 0 0 chr9 27905153 27905209 -96170963 + Lx7 LINE L1 7641 7696 0 5 797 511 355 11 0 chr9 27905298 27905487 -96170685 + MER2 DNA MER2_type 154 344 -1 5 797 662 297 66 29 chr9 27907835 27908109 -96168063 + B4 SINE B4 9 292 0 5 797 206 289 78 25 chr9 27908283 27908380 -96167792 - MIR SINE MIR -93 183 75 5 797 207 65 65 0 chr9 27911967 27912013 -96164159 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 797 180 241 56 0 chr9 27912076 27912130 -96164042 + L3 LINE CR1 69 125 -4364 5 797 431 35 0 17 chr9 27913715 27913773 -96162399 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 5 797 1140 66 0 0 chr9 27913773 27913910 -96162262 - B1_Mm SINE Alu -10 137 1 5 797 439 336 0 28 chr9 27913952 27914096 -96162076 - MER20 DNA MER1_type -74 145 6 5 797 399 310 16 32 chr9 27914297 27914487 -96161685 - MER3 DNA MER1_type -13 196 10 5 797 443 18 0 18 chr9 27915570 27915627 -96160545 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 797 21 0 0 0 chr9 27915670 27915691 -96160481 + AT_rich Low_complexity Low_complexity 1 21 0 5 797 933 88 122 0 chr9 27916084 27916231 -96159941 + B2_Mm2 SINE B2 1 165 -30 5 797 306 0 0 0 chr9 27916418 27916452 -96159720 + (TTG)n Simple_repeat Simple_repeat 2 35 0 5 797 1087 296 13 13 chr9 27917364 27917737 -96158435 + L1MA5 LINE L1 5463 5835 -465 5 797 339 237 0 0 chr9 27917953 27918046 -96158126 + CT-rich Low_complexity Low_complexity 4 96 0 5 798 487 366 27 48 chr9 27918411 27918824 -96157348 - MER121 Unknown Unknown 0 412 9 5 798 23 54 0 0 chr9 27918936 27918973 -96157199 + AT_rich Low_complexity Low_complexity 1 37 0 5 798 192 152 0 0 chr9 27919075 27919108 -96157064 + (TTA)n Simple_repeat Simple_repeat 1 33 0 5 798 1504 251 84 83 chr9 27919172 27919836 -96156336 - Lx6 LINE L1 0 7460 6796 5 798 192 390 46 46 chr9 27920929 27921125 -96155047 - L2 LINE L2 -341 3078 2883 5 798 324 0 0 0 chr9 27921284 27921320 -96154852 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 798 192 152 0 0 chr9 27923676 27923709 -96152463 + CT-rich Low_complexity Low_complexity 4 36 0 5 798 435 95 0 0 chr9 27924612 27924686 -96151486 + (A)n Simple_repeat Simple_repeat 1 74 0 5 798 313 362 6 32 chr9 27924699 27924856 -96151316 - RMER15 LTR ERVL -124 451 299 5 798 279 308 45 85 chr9 27925878 27926077 -96150095 - L2c LINE L2 -12 3375 3185 5 798 532 267 0 20 chr9 27926374 27926523 -96149649 + ID_B1 SINE B4 79 224 0 5 798 206 160 20 0 chr9 27927131 27927181 -96148991 + T-rich Low_complexity Low_complexity 4 54 0 5 798 191 324 88 18 chr9 27927251 27927364 -96148808 - MIR3 SINE MIR -21 187 67 5 798 189 373 30 38 chr9 27927449 27927580 -96148592 - MIRb SINE MIR 0 268 139 5 798 232 264 27 14 chr9 27927643 27927716 -96148456 - MIR SINE MIR -116 146 73 5 798 190 306 0 0 chr9 27927770 27927819 -96148353 - MIRb SINE MIR -194 74 26 5 798 303 28 0 0 chr9 27928159 27928195 -96147977 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 798 381 230 11 0 chr9 27929230 27929317 -96146855 + MT2A LTR ERVL 1 88 -445 5 798 782 161 13 0 chr9 27929318 27929467 -96146705 + CT-rich Low_complexity Low_complexity 2 152 0 5 798 1130 220 165 57 chr9 27929500 27929829 -96146343 + MT2A LTR ERVL 85 471 -62 5 798 234 0 0 0 chr9 27929829 27929855 -96146317 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 5 798 1130 220 165 57 chr9 27929855 27929930 -96146242 + MT2A LTR ERVL 472 533 0 5 798 184 191 106 0 chr9 27930588 27930635 -96145537 - MIR3 SINE MIR -51 157 106 5 798 235 343 131 14 chr9 27930804 27931079 -96145093 + L2a LINE L2 3120 3426 0 5 798 192 77 0 0 chr9 27931204 27931230 -96144942 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 798 3979 211 53 95 chr9 27931964 27933017 -96143155 + RMER1B Other Other 49 1057 -9 5 798 977 156 0 9 chr9 27933064 27933289 -96142883 + CT-rich Low_complexity Low_complexity 1 222 0 5 798 364 308 69 0 chr9 27933362 27933492 -96142680 + B1F1 SINE Alu 1 139 -10 5 798 354 300 54 49 chr9 27933501 27933784 -96142388 + B4 SINE B4 2 274 -18 5 798 486 0 0 0 chr9 27933803 27933857 -96142315 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 798 513 0 0 0 chr9 27934166 27934223 -96141949 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 798 1117 318 78 31 chr9 27935334 27935915 -96140257 - Lx8 LINE L1 -244 7229 6622 5 798 575 308 76 30 chr9 27936021 27936453 -96139719 - Lx8 LINE L1 -6313 1295 844 5 798 195 265 11 98 chr9 27939267 27939359 -96136813 - L2b LINE L2 -5 3370 3287 5 798 414 0 0 0 chr9 27940050 27940096 -96136076 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 798 255 125 0 0 chr9 27941744 27941784 -96134388 + (A)n Simple_repeat Simple_repeat 1 40 0 5 798 207 89 128 43 chr9 27941784 27941831 -96134341 - MIRc SINE MIR -149 119 69 5 798 789 301 76 44 chr9 27942819 27943585 -96132587 + L1MB7 LINE L1 5298 6116 -68 5 798 1020 119 6 11 chr9 27943683 27943862 -96132310 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 798 568 342 45 39 chr9 27945180 27945466 -96130706 + B4A SINE B4 5 292 0 5 798 326 107 18 0 chr9 27945474 27945530 -96130642 + (CATA)n Simple_repeat Simple_repeat 4 60 0 5 798 1967 176 64 15 chr9 27946133 27946526 -96129646 + MTC LTR MaLR 2 413 -8 5 798 27 49 0 0 chr9 27946768 27946809 -96129363 + AT_rich Low_complexity Low_complexity 1 41 0 5 798 266 379 12 92 chr9 27947510 27947760 -96128412 + MIRc SINE MIR 19 248 -20 5 798 452 291 51 37 chr9 27948325 27948584 -96127588 + L2a LINE L2 2775 3279 -147 5 798 3041 89 53 0 chr9 27949179 27949596 -96126576 - L1_Mus1 LINE L1 -2 6565 6127 5 798 4816 53 2 5 chr9 27949596 27950188 -96125984 + L1Md_F2 LINE L1 5589 6178 -404 5 798 234 394 0 0 chr9 27950194 27950288 -96125884 - MARNA DNA Mariner -255 331 238 5 798 458 320 90 54 chr9 27950488 27951077 -96125095 + L1MA8 LINE L1 5561 6166 -146 5 798 297 0 0 0 chr9 27951079 27951112 -96125060 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 798 4933 211 62 83 chr9 27951177 27952477 -96123695 - Lx7 LINE L1 0 7696 6424 5 798 488 196 0 81 chr9 27952555 27952666 -96123506 + PB1D9 SINE Alu 3 104 -16 5 798 501 80 0 0 chr9 27952942 27953017 -96123155 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 798 495 33 0 0 chr9 27953017 27953078 -96123094 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 798 189 175 0 0 chr9 27953079 27953119 -96123053 + GA-rich Low_complexity Low_complexity 2 41 0 5 798 297 288 37 46 chr9 27953299 27953408 -96122764 - ID_B1 SINE B4 -3 221 114 5 798 243 79 0 0 chr9 27955829 27955867 -96120305 + (T)n Simple_repeat Simple_repeat 1 38 0 5 798 432 55 0 0 chr9 27956392 27956447 -96119725 + (TCTCCC)n Simple_repeat Simple_repeat 4 58 0 5 798 216 109 42 42 chr9 27957567 27957615 -96118557 + GA-rich Low_complexity Low_complexity 1 48 0 5 798 477 0 0 0 chr9 27957637 27957690 -96118482 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 798 351 0 0 0 chr9 27957690 27957728 -96118444 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 798 1117 150 122 24 chr9 27958678 27958883 -96117289 + URR1A DNA MER1_type 1 225 -1 5 798 240 167 0 0 chr9 27959745 27959793 -96116379 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 798 180 111 0 0 chr9 27960403 27960430 -96115742 + (TAAAAA)n Simple_repeat Simple_repeat 3 29 0 5 798 219 125 0 0 chr9 27960476 27960516 -96115656 + (TTTCC)n Simple_repeat Simple_repeat 2 41 0 5 798 384 124 33 22 chr9 27961941 27962032 -96114140 + (CATA)n Simple_repeat Simple_repeat 4 95 0 5 798 635 259 95 35 chr9 27962658 27962890 -96113282 - B4 SINE B4 0 292 47 5 798 261 0 0 0 chr9 27963018 27963047 -96113125 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 798 5426 64 65 3 chr9 27965094 27965804 -96110368 + L1Md_F2 LINE L1 5829 6582 0 5 798 187 278 19 0 chr9 27966422 27966476 -96109696 + L2 LINE L2 2397 2451 -968 5 798 833 54 0 9 chr9 27967064 27967176 -96108996 + (TTC)n Simple_repeat Simple_repeat 3 113 0 5 798 285 29 0 0 chr9 27968280 27968314 -96107858 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 798 199 268 77 23 chr9 27969132 27969278 -96106894 + MIR SINE MIR 78 240 -28 5 798 318 195 0 0 chr9 27970900 27970977 -96105195 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 5 798 618 311 161 16 chr9 27971034 27971282 -96104890 - B4 SINE B4 -8 284 1 5 798 850 283 53 21 chr9 27971858 27972140 -96104032 + B4A SINE B4 2 292 0 5 798 204 276 13 26 chr9 27972142 27972220 -96103952 + (CA)n Simple_repeat Simple_repeat 1 77 0 5 798 247 297 93 7 chr9 27972257 27972396 -96103776 + MIRb SINE MIR 54 204 -64 5 798 716 281 54 19 chr9 27973447 27973705 -96102467 + MER121 Unknown Unknown 69 335 -77 6 798 249 83 0 0 chr9 27975712 27975748 -96100424 + (A)n Simple_repeat Simple_repeat 1 36 0 6 798 22 0 0 0 chr9 27976777 27976799 -96099373 + AT_rich Low_complexity Low_complexity 1 22 0 6 798 3366 102 4 34 chr9 27977085 27977593 -96098579 - L1_Mus3 LINE L1 -2 6636 6144 6 798 276 244 25 37 chr9 27978949 27979030 -96097142 + MLT1J1 LTR MaLR 78 157 -287 6 798 286 286 0 0 chr9 27981377 27981440 -96094732 - ID4 SINE ID -18 65 3 6 798 510 131 41 8 chr9 27981460 27981583 -96094589 + (TA)n Simple_repeat Simple_repeat 2 128 0 6 798 733 163 96 7 chr9 27981760 27981896 -96094276 - B1_Mur4 SINE Alu -2 148 1 6 798 21 0 0 0 chr9 27981923 27981944 -96094228 + AT_rich Low_complexity Low_complexity 1 21 0 6 798 522 291 37 42 chr9 27982123 27982313 -96093859 + RMER30 DNA MER1_type 5 193 -9 6 798 281 236 14 14 chr9 27982552 27982625 -96093547 + PB1D10 SINE Alu 38 110 -7 6 798 596 242 126 5 chr9 27987512 27987711 -96088461 + MER2 DNA MER2_type 91 313 -32 6 798 2009 172 46 0 chr9 27988494 27988842 -96087330 + ORR1B2 LTR MaLR 1 364 -3 6 798 2893 55 0 0 chr9 27988842 27989188 -96086984 - ORR1A1 LTR MaLR 0 346 1 6 798 313 135 0 0 chr9 27990837 27990889 -96085283 - Lx8 LINE L1 0 7473 7422 6 798 700 299 9 18 chr9 27992686 27992904 -96083268 - ID_B1 SINE B4 -8 216 1 6 798 842 94 8 0 chr9 27993061 27993154 -96083018 + (TTC)n Simple_repeat Simple_repeat 2 95 0 6 798 1112 34 16 48 chr9 27993154 27993340 -96082832 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 798 842 94 8 0 chr9 27993340 27993374 -96082798 + (TTC)n Simple_repeat Simple_repeat 1 34 0 6 798 219 319 0 0 chr9 27993623 27993692 -96082480 + ID4_ SINE ID 9 77 -6 6 798 197 375 41 14 chr9 27995405 27995551 -96080621 + MIRc SINE MIR 74 223 -45 6 798 380 218 18 0 chr9 27995753 27995987 -96080185 + GA-rich Low_complexity Low_complexity 1 238 0 6 798 722 113 0 9 chr9 27997653 27997769 -96078403 + (TTTC)n Simple_repeat Simple_repeat 3 117 0 6 798 1501 241 24 25 chr9 27998561 27998966 -96077206 + MTD LTR MaLR 6 405 -14 6 798 201 147 0 0 chr9 27999517 27999551 -96076621 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 6 798 1191 112 0 0 chr9 27999552 27999731 -96076441 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 6 798 255 125 0 0 chr9 27999731 27999771 -96076401 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 6 798 297 269 15 0 chr9 28000134 28000201 -96075971 - ID4_ SINE ID -13 70 3 1 798 746 167 28 35 chr9 28000278 28000421 -96075751 - B1_Mm SINE Alu -5 142 1 2 798 285 303 103 12 chr9 28000445 28000623 -96075549 + MIR SINE MIR 49 245 -23 3 798 1081 280 130 61 chr9 28002428 28003113 -96073059 - Lx9 LINE L1 -15 7629 6898 4 798 750 328 0 8 chr9 28003117 28003375 -96072797 + Lx9 LINE L1 6627 6882 -762 4 798 614 306 102 29 chr9 28007658 28008410 -96067762 - L1ME1 LINE L1 -249 6103 5291 5 798 350 335 66 0 chr9 28008450 28008602 -96067570 - L1ME1 LINE L1 -1134 5185 5024 5 798 423 125 0 0 chr9 28008842 28008914 -96067258 + (TCC)n Simple_repeat Simple_repeat 2 73 0 6 798 697 270 13 7 chr9 28008922 28009075 -96067097 + RSINE1 SINE B4 6 159 -6 7 798 449 278 65 42 chr9 28009114 28009328 -96066844 - L1MC LINE L1 -2467 5575 5357 8 798 876 318 101 31 chr9 28009433 28009505 -96066667 - L1ME1 LINE L1 -5434 966 878 5 798 186 43 0 0 chr9 28009505 28009528 -96066644 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9 798 876 318 101 31 chr9 28009528 28010270 -96065902 - L1ME1 LINE L1 -5523 877 96 5 798 1578 153 142 6 chr9 28010663 28010986 -96065186 - ORR1B2 LTR MaLR 0 367 1 1 798 248 389 30 71 chr9 28012321 28012490 -96063682 + RSINE1 SINE B4 4 165 0 1 798 1984 219 171 14 chr9 28012610 28013236 -96062936 - RMER19A LTR ERVK -13 724 1 1 798 1616 212 123 3 chr9 28013739 28014112 -96062060 + MTC LTR MaLR 4 421 0 1 798 805 289 39 35 chr9 28014519 28014802 -96061370 - B4 SINE B4 0 292 9 1 798 25 0 0 0 chr9 28016693 28016718 -96059454 + AT_rich Low_complexity Low_complexity 1 25 0 1 798 2019 68 7 24 chr9 28018079 28018367 -96057805 + L1Md_F2 LINE L1 6299 6581 -1 1 798 217 75 24 24 chr9 28018416 28018457 -96057715 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 1 798 274 372 68 0 chr9 28019388 28019579 -96056593 + MIRb SINE MIR 59 262 -6 1 798 222 235 212 10 chr9 28019588 28019687 -96056485 + L2a LINE L2 3299 3417 -9 1 798 306 271 131 31 chr9 28019766 28019926 -96056246 + MER44A DNA MER2_type 37 212 -127 2 798 628 242 89 60 chr9 28020359 28020730 -96055442 - RLTR26 LTR ERVK -212 430 4 2 798 493 294 106 39 chr9 28020794 28021049 -96055123 + RMER5 LTR ERV1 261 532 -2 2 798 246 196 143 0 chr9 28021072 28021128 -96055044 + ID SINE ID 4 67 -157 2 798 507 301 34 7 chr9 28022936 28023083 -96053089 + B3A SINE B2 1 151 -47 2 798 285 89 0 0 chr9 28023113 28023158 -96053014 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 2 798 306 0 0 0 chr9 28023161 28023195 -96052977 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 798 294 87 0 0 chr9 28023338 28023384 -96052788 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 798 22 70 0 0 chr9 28023453 28023496 -96052676 + AT_rich Low_complexity Low_complexity 1 43 0 2 798 627 271 53 0 chr9 28023500 28023651 -96052521 + B3A SINE B2 1 159 -39 2 798 234 91 0 0 chr9 28023691 28023724 -96052448 + (TCC)n Simple_repeat Simple_repeat 2 34 0 3 798 21 36 0 0 chr9 28023750 28023778 -96052394 + AT_rich Low_complexity Low_complexity 1 28 0 3 798 288 190 12 23 chr9 28024649 28024735 -96051437 + GA-rich Low_complexity Low_complexity 4 88 0 3 798 21 0 0 0 chr9 28025062 28025083 -96051089 + AT_rich Low_complexity Low_complexity 1 21 0 3 798 429 20 0 0 chr9 28026707 28026757 -96049415 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 798 271 234 61 159 chr9 28028768 28028931 -96047241 - MER20 DNA MER1_type -66 153 7 3 798 200 34 0 33 chr9 28029996 28030026 -96046146 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 798 453 143 52 0 chr9 28030026 28030103 -96046069 - B1_Mur1 SINE Alu -10 139 59 3 798 462 36 0 0 chr9 28035242 28035298 -96040874 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 798 1956 268 131 29 chr9 28035411 28035714 -96040458 - L1MC1 LINE L1 -2 6506 6178 3 798 519 17 0 0 chr9 28035714 28035774 -96040398 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 798 225 0 0 0 chr9 28035774 28035798 -96040374 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 798 1956 267 131 40 chr9 28035798 28036754 -96039418 - L1MC1 LINE L1 -331 6177 5123 3 798 423 0 0 0 chr9 28036754 28036801 -96039371 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 798 872 266 130 56 chr9 28036801 28036997 -96039175 - L1MC1 LINE L1 -1199 5122 4911 3 798 395 320 32 42 chr9 28037083 28037272 -96038900 - B4A SINE B4 0 292 106 4 798 4377 253 136 36 chr9 28037286 28037694 -96038478 - L1MC1 LINE L1 -1474 4847 4425 3 798 516 32 0 0 chr9 28037694 28037756 -96038416 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4 798 4377 253 136 36 chr9 28037756 28039382 -96036790 - L1MC1 LINE L1 -1897 4424 2610 3 798 21 0 0 0 chr9 28039406 28039427 -96036745 + AT_rich Low_complexity Low_complexity 1 21 0 4 798 366 61 0 0 chr9 28039427 28039476 -96036696 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 798 313 287 138 0 chr9 28039508 28039602 -96036570 - B3A SINE B2 -51 147 41 4 798 562 265 54 72 chr9 28039662 28040022 -96036150 - L1MC1 LINE L1 -3795 2526 2172 3 798 307 138 172 0 chr9 28042002 28042089 -96034083 - Lx9 LINE L1 -7 7637 7536 4 798 370 337 151 11 chr9 28042115 28042394 -96033778 - MLT-int LTR MaLR -1163 572 255 4 798 306 326 50 50 chr9 28042405 28042605 -96033567 - MLT-int LTR MaLR -1534 201 2 4 798 1363 71 21 11 chr9 28042630 28042816 -96033356 - B2_Mm1t SINE B2 -5 188 1 5 798 261 0 0 0 chr9 28042861 28042890 -96033282 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 5 798 799 232 42 46 chr9 28042892 28043131 -96033041 - MTEa LTR MaLR -140 239 2 5 798 321 26 0 0 chr9 28043186 28043224 -96032948 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 5 798 188 312 39 0 chr9 28043651 28043728 -96032444 - L2c LINE L2 -49 3338 3259 5 798 264 327 95 13 chr9 28046227 28046385 -96029787 + L4 LINE RTE 695 865 -1164 5 798 195 167 0 0 chr9 28046509 28046551 -96029621 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 5 798 547 269 7 15 chr9 28046551 28046687 -96029485 - B1F SINE Alu -12 137 3 5 798 245 327 68 34 chr9 28047217 28047334 -96028838 + B4A SINE B4 157 277 -15 5 798 273 243 0 0 chr9 28047890 28047997 -96028175 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 798 295 362 8 0 chr9 28048009 28048136 -96028036 + MIR3 SINE MIR 62 189 -19 6 798 470 325 80 76 chr9 28048378 28048628 -96027544 + B4 SINE B4 1 251 -41 6 798 432 0 0 0 chr9 28048635 28048683 -96027489 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 798 491 138 16 0 chr9 28048683 28048806 -96027366 + (CAGA)n Simple_repeat Simple_repeat 2 126 0 6 799 228 316 59 8 chr9 28054260 28054378 -96021794 + MER5A1 DNA MER1_type 1 124 -42 6 799 600 14 0 0 chr9 28057528 28057597 -96018575 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 799 1324 230 63 27 chr9 28059702 28060068 -96016104 + MTE2a LTR MaLR 1 379 0 6 799 227 338 0 51 chr9 28060547 28060625 -96015547 + L3 LINE CR1 4304 4377 -112 6 799 208 281 47 35 chr9 28060983 28061068 -96015104 - L2b LINE L2 -36 3339 3254 6 799 516 265 27 45 chr9 28061830 28061933 -96014239 - Lx9 LINE L1 -83 7561 7456 6 799 253 68 45 0 chr9 28061933 28061977 -96014195 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 799 516 265 27 45 chr9 28061977 28062094 -96014078 - Lx9 LINE L1 -189 7455 7345 6 799 525 128 0 0 chr9 28062346 28062448 -96013724 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 799 1723 146 54 67 chr9 28064187 28064583 -96011589 - ORR1B2 LTR MaLR 0 378 1 7 799 473 258 31 0 chr9 28065633 28065761 -96010411 + B3A SINE B2 2 133 -65 7 799 564 29 0 0 chr9 28065776 28065846 -96010326 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 799 1654 21 21 0 chr9 28067804 28067993 -96008179 + B2_Mm1t SINE B2 1 193 0 7 799 513 47 0 0 chr9 28068216 28068280 -96007892 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 799 961 56 72 0 chr9 28068281 28068406 -96007766 - B1_Mus1 SINE Alu -12 136 3 7 799 198 174 0 0 chr9 28069548 28069594 -96006578 + (TGG)n Simple_repeat Simple_repeat 3 48 0 7 799 549 58 0 34 chr9 28069592 28069681 -96006491 + (GGA)n Simple_repeat Simple_repeat 1 86 0 7 799 524 198 25 0 chr9 28070078 28070199 -96005973 - Lx9 LINE L1 -7 7637 7514 8 799 384 22 0 0 chr9 28070199 28070244 -96005928 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 799 1865 180 139 29 chr9 28070244 28070691 -96005481 - Lx9 LINE L1 -284 7360 6865 8 799 324 264 0 11 chr9 28073262 28073350 -96002822 + GA-rich Low_complexity Low_complexity 4 90 0 8 799 207 0 0 0 chr9 28073442 28073465 -96002707 + (T)n Simple_repeat Simple_repeat 1 23 0 8 799 1384 259 49 16 chr9 28073659 28074028 -96002144 + MTD LTR MaLR 1 381 -38 8 799 689 233 12 30 chr9 28074646 28074814 -96001358 + MTD LTR MaLR 255 419 0 8 799 306 233 57 57 chr9 28075135 28075258 -96000914 + RMER15-int LTR ERVL 2 124 -4875 8 799 1137 348 47 4 chr9 28075398 28075883 -96000289 + RMER15-int LTR ERVL 333 838 -4161 8 799 261 296 106 0 chr9 28075921 28076053 -96000119 + RMER15 LTR ERVL 372 517 -58 8 799 294 367 9 0 chr9 28076481 28076590 -95999582 - Charlie1 DNA MER1_type -2667 114 5 8 799 23 68 0 0 chr9 28077059 28077103 -95999069 + AT_rich Low_complexity Low_complexity 1 44 0 8 799 22 0 0 0 chr9 28078535 28078557 -95997615 + AT_rich Low_complexity Low_complexity 1 22 0 8 799 359 204 35 109 chr9 28078558 28078678 -95997494 + MTD LTR MaLR 248 364 -55 9 799 4413 39 0 0 chr9 28078692 28079206 -95996966 - L1Md_T LINE L1 0 6582 6069 9 799 310 80 0 0 chr9 28079208 28079258 -95996914 - L1Md_F3 LINE L1 -10 6574 6525 9 799 189 246 35 0 chr9 28080438 28080495 -95995677 - L2a LINE L2 -268 3158 3100 9 799 705 110 0 0 chr9 28080928 28081055 -95995117 + (GA)n Simple_repeat Simple_repeat 1 127 0 9 799 430 371 66 13 chr9 28081257 28081637 -95994535 - L2 LINE L2 -1225 2194 1795 9 799 242 105 0 0 chr9 28081773 28081811 -95994361 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 9 799 394 292 60 30 chr9 28082035 28082169 -95994003 - RSINE1 SINE B4 -19 146 9 9 799 1196 115 15 45 chr9 28082199 28082399 -95993773 - B2_Mm2 SINE B2 0 195 2 9 799 450 0 0 0 chr9 28082976 28083026 -95993146 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 799 323 252 123 23 chr9 28084023 28084153 -95992019 + MIR SINE MIR 113 255 -7 1 799 189 0 0 0 chr9 28084267 28084288 -95991884 + (CG)n Simple_repeat Simple_repeat 1 21 0 1 799 378 0 0 0 chr9 28084288 28084329 -95991843 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 799 1127 171 75 9 chr9 28084862 28085074 -95991098 - URR1A DNA MER1_type 0 226 1 1 799 1160 251 104 11 chr9 28085420 28085767 -95990405 + MTE2b LTR MaLR 1 379 0 1 799 261 277 71 56 chr9 28085767 28085893 -95990279 - MLT1E3 LTR MaLR -435 189 62 1 799 736 309 125 72 chr9 28085901 28086564 -95989608 - MER44D DNA MER2_type 0 705 8 1 799 277 305 57 41 chr9 28086970 28087093 -95989079 - MIRc SINE MIR -119 149 25 1 799 280 330 75 0 chr9 28087328 28087422 -95988750 + L2a LINE L2 3310 3410 -16 1 799 399 271 107 12 chr9 28088079 28088247 -95987925 + MIR SINE MIR 71 254 -8 1 799 585 258 31 37 chr9 28090990 28091151 -95985021 - RSINE1 SINE B4 -2 163 4 1 799 349 176 36 0 chr9 28091585 28091673 -95984499 + MIR SINE MIR 40 139 -69 1 799 318 324 0 18 chr9 28094848 28094961 -95981211 - MIRb SINE MIR -6 262 152 1 799 1630 248 53 24 chr9 28096324 28096829 -95979343 - RMER5 LTR ERV1 -2 532 13 1 799 276 289 33 58 chr9 28096899 28097020 -95979152 - MER44D DNA MER2_type -587 118 1 1 799 345 306 32 53 chr9 28097684 28097874 -95978298 + MIRb SINE MIR 44 229 -39 1 799 726 106 0 0 chr9 28098065 28098197 -95977975 + (GA)n Simple_repeat Simple_repeat 1 132 0 1 799 192 226 37 19 chr9 28098964 28099018 -95977154 - L3 LINE CR1 -91 4398 4344 1 799 924 243 110 18 chr9 28100297 28100632 -95975540 - MLT1B LTR MaLR -19 371 6 1 799 291 54 0 0 chr9 28100670 28100707 -95975465 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 799 216 211 0 0 chr9 28100715 28100791 -95975381 + GA-rich Low_complexity Low_complexity 1 76 0 1 799 330 43 22 0 chr9 28100845 28100891 -95975281 + MTC LTR MaLR 1 47 -374 1 799 1519 154 4 11 chr9 28100890 28101152 -95975020 + MTC LTR MaLR 162 421 0 1 799 259 300 13 0 chr9 28103339 28103432 -95972740 + MIRb SINE MIR 159 256 -6 1 799 711 196 18 21 chr9 28103706 28104042 -95972130 + (TCCA)n Simple_repeat Simple_repeat 1 335 0 1 799 396 0 0 0 chr9 28104605 28104649 -95971523 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 799 368 40 0 20 chr9 28104649 28104699 -95971473 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 799 205 152 0 0 chr9 28105373 28105406 -95970766 + (TCTCTG)n Simple_repeat Simple_repeat 6 38 0 1 799 306 0 0 0 chr9 28105412 28105446 -95970726 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 799 599 168 0 6 chr9 28105770 28105938 -95970234 + GA-rich Low_complexity Low_complexity 2 168 0 1 799 477 222 8 23 chr9 28105964 28106234 -95969938 + GA-rich Low_complexity Low_complexity 1 265 0 1 799 321 68 0 0 chr9 28106618 28106662 -95969510 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 799 931 246 126 3 chr9 28106919 28107221 -95968951 - ORR1D1 LTR MaLR -1 373 35 1 799 991 271 83 10 chr9 28107242 28107544 -95968628 - MTEa LTR MaLR -55 324 1 1 799 357 167 0 0 chr9 28108084 28108186 -95967986 + (CA)n Simple_repeat Simple_repeat 2 103 0 1 799 4803 154 106 9 chr9 28111412 28112196 -95963976 - RMER13A LTR ERVK 0 860 1 1 799 182 192 0 19 chr9 28115752 28115805 -95960367 + GA-rich Low_complexity Low_complexity 1 52 0 1 799 321 324 45 45 chr9 28115823 28115978 -95960194 + HAL1-3A_ME LINE L1 2285 2439 -419 1 799 507 306 90 11 chr9 28116102 28116290 -95959882 + Tigger5 DNA MER2_type 37 239 -2167 1 799 299 319 133 14 chr9 28116422 28116632 -95959540 + Tigger5 DNA MER2_type 2167 2401 -5 1 799 383 320 101 65 chr9 28117189 28117466 -95958706 + MLT1A LTR MaLR 72 358 -16 1 799 1758 188 176 25 chr9 28117633 28118031 -95958141 + RMER6B LTR ERVK 1 458 -3 1 799 31 0 0 0 chr9 28118061 28118092 -95958080 + AT_rich Low_complexity Low_complexity 1 31 0 1 799 710 247 76 0 chr9 28118113 28118271 -95957901 - B3A SINE B2 -27 171 2 1 799 397 277 26 26 chr9 28120263 28120378 -95955794 - MER34A1 LTR ERV1 -440 147 33 1 799 463 281 27 107 chr9 28121601 28121732 -95954440 - MER20 DNA MER1_type -42 177 51 1 799 600 14 0 0 chr9 28121732 28121801 -95954371 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1 799 463 281 27 107 chr9 28121801 28121856 -95954316 - MER20 DNA MER1_type -169 50 6 1 799 652 307 56 73 chr9 28122017 28122319 -95953853 + Tigger5 DNA MER2_type 6 302 -2104 1 799 634 298 94 76 chr9 28122293 28122634 -95953538 - ORR1E LTR MaLR -12 347 1 1 799 910 230 5 40 chr9 28122634 28122832 -95953340 - ORR1E-int LTR MaLR -53 1527 1338 1 799 331 337 0 22 chr9 28122887 28122978 -95953194 - ORR1E-int LTR MaLR -1044 465 425 1 799 234 0 0 0 chr9 28122978 28123004 -95953168 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 799 1468 301 22 20 chr9 28123004 28123460 -95952712 - ORR1E-int LTR MaLR -1142 438 1 1 799 889 278 42 84 chr9 28123468 28123826 -95952346 - ORR1E LTR MaLR -7 352 10 1 799 819 240 55 40 chr9 28124454 28124654 -95951518 + B3 SINE B2 7 209 -7 1 799 692 381 47 15 chr9 28125033 28125441 -95950731 - L3 LINE CR1 -686 3803 3383 1 799 1057 307 38 16 chr9 28128135 28128506 -95947666 - MTE2b LTR MaLR 0 379 1 1 799 616 179 9 0 chr9 28128663 28128769 -95947403 + ORR1D1 LTR MaLR 1 107 -267 1 799 3265 73 9 0 chr9 28128769 28129192 -95946980 - L1_Mus3 LINE L1 -568 6070 5644 1 799 4224 89 4 6 chr9 28129192 28129737 -95946435 + L1_Mus3 LINE L1 6089 6632 -6 1 799 817 257 46 18 chr9 28129737 28129955 -95946217 + ORR1D1 LTR MaLR 91 314 -60 1 799 398 304 101 62 chr9 28130047 28130226 -95945946 - MLT1J LTR MaLR -229 283 98 1 799 578 82 12 0 chr9 28130796 28130881 -95945291 + (TCCA)n Simple_repeat Simple_repeat 4 89 0 1 799 286 333 70 23 chr9 28131454 28131583 -95944589 + MLT1D LTR MaLR 1 135 -230 1 799 249 301 0 35 chr9 28131704 28131790 -95944382 + MLT1D LTR MaLR 248 330 -35 1 799 291 270 202 23 chr9 28132726 28132810 -95943362 + MTEa LTR MaLR 1 102 -277 1 799 1903 85 62 8 chr9 28132810 28133070 -95943102 + L1_Mus3 LINE L1 6365 6638 0 1 799 291 270 202 23 chr9 28133070 28133114 -95943058 + MTEa LTR MaLR 103 152 -227 1 799 299 283 140 9 chr9 28133696 28133803 -95942369 + MLT1D LTR MaLR 385 505 0 1 799 203 289 53 43 chr9 28133954 28134048 -95942124 + MIRb SINE MIR 104 198 -70 1 799 897 267 32 60 chr9 28134215 28134280 -95941892 + B4A SINE B4 2 64 -228 1 799 1392 261 59 6 chr9 28134280 28134635 -95941537 + ORR1D1 LTR MaLR 1 374 0 1 799 897 267 32 60 chr9 28134635 28134820 -95941352 + B4A SINE B4 65 245 -47 1 799 688 308 97 27 chr9 28136582 28136912 -95939260 - MLT1A0 LTR MaLR -12 353 1 1 799 297 293 50 0 chr9 28136945 28137044 -95939128 - ORR1E LTR MaLR 0 359 256 1 799 247 247 38 36 chr9 28137231 28137321 -95938851 - ORR1E LTR MaLR -264 110 29 1 799 297 0 0 0 chr9 28139750 28139783 -95936389 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 799 6715 82 6 2 chr9 28139829 28140685 -95935487 - L1_Mus3 LINE L1 -2 6636 5778 1 799 8731 129 1 16 chr9 28140685 28142037 -95934135 + Lx LINE L1 4478 5815 -839 1 799 1208 228 124 50 chr9 28142209 28142357 -95933815 + MTD LTR MaLR 14 187 -232 1 799 813 101 0 44 chr9 28142357 28142492 -95933680 + Lx LINE L1 6522 6650 -4 1 799 884 114 7 0 chr9 28142496 28142636 -95933536 + (GGGAA)n Simple_repeat Simple_repeat 4 144 0 1 799 1208 228 124 50 chr9 28142636 28142860 -95933312 + MTD LTR MaLR 188 419 0 1 799 339 341 58 12 chr9 28143345 28143517 -95932655 - ORR1E LTR MaLR -179 180 1 1 799 297 241 59 24 chr9 28143626 28143711 -95932461 + MTEa LTR MaLR 278 365 -14 1 799 306 50 0 0 chr9 28145396 28145436 -95930736 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 799 258 193 0 0 chr9 28146605 28146662 -95929510 + (TAG)n Simple_repeat Simple_repeat 3 59 0 1 799 1855 149 160 6 chr9 28147451 28147769 -95928403 - ORR1B2 LTR MaLR 0 367 1 1 799 4238 159 23 37 chr9 28147769 28148583 -95927589 - ORR1B2-int LTR MaLR 0 1509 707 1 799 212 407 7 7 chr9 28148709 28148845 -95927327 - MIRb SINE MIR -52 216 81 1 799 11700 60 6 6 chr9 28149911 28152067 -95924105 - L1Md_F2 LINE L1 -1 6581 4427 1 799 195 69 0 0 chr9 28152067 28152096 -95924076 + (T)n Simple_repeat Simple_repeat 1 29 0 1 799 1324 43 12 0 chr9 28152362 28152526 -95923646 - L1Md_F2 LINE L1 -12 6570 6405 1 799 1347 59 0 0 chr9 28152526 28152696 -95923476 - L1Md_F2 LINE L1 -2236 3647 3478 1 799 611 161 271 12 chr9 28152750 28152920 -95923252 + B3 SINE B2 3 216 0 1 799 426 20 0 0 chr9 28152971 28153022 -95923150 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 799 189 94 0 0 chr9 28153398 28153430 -95922742 + (ATG)n Simple_repeat Simple_repeat 1 32 0 1 799 2061 320 91 16 chr9 28153540 28154476 -95921696 - Lx8 LINE L1 -272 7201 6196 1 799 607 371 6 11 chr9 28154524 28154704 -95921468 - B3A SINE B2 -18 180 2 1 799 852 254 24 0 chr9 28154934 28155139 -95921033 + B3 SINE B2 1 210 -6 1 799 229 316 78 9 chr9 28155175 28155290 -95920882 - L1M5 LINE L1 -514 5648 5526 1 799 714 277 6 48 chr9 28155351 28155518 -95920654 - RSINE1 SINE B4 -3 162 3 1 799 277 275 15 30 chr9 28155599 28155734 -95920438 - L1M5 LINE L1 -784 5362 5230 1 799 233 358 81 8 chr9 28158526 28158650 -95917522 + MLT1E3 LTR MaLR 50 182 -471 1 799 466 353 84 61 chr9 28158714 28159220 -95916952 - MLT2B3 LTR ERVL -57 660 20 1 799 749 258 55 6 chr9 28159482 28159665 -95916507 + B3 SINE B2 20 211 -5 1 799 414 345 88 35 chr9 28159679 28159907 -95916265 + MLT1E3 LTR MaLR 362 601 -23 1 799 346 214 57 0 chr9 28160319 28160389 -95915783 + PB1D10 SINE Alu 3 76 -41 1 799 403 319 56 14 chr9 28160398 28160541 -95915631 + Lx8 LINE L1 6941 7089 -384 1 799 283 348 26 9 chr9 28160546 28160659 -95915513 + Lx8 LINE L1 7237 7351 -122 1 799 204 340 27 95 chr9 28160927 28161148 -95915024 + MIRb SINE MIR 2 207 -61 1 799 258 319 11 11 chr9 28161952 28162044 -95914128 + ORR1D2 LTR MaLR 279 370 0 1 799 231 260 80 0 chr9 28163032 28163082 -95913090 - ID4 SINE ID -28 55 2 1 799 183 80 0 0 chr9 28164639 28164664 -95911508 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 799 1102 138 0 0 chr9 28164664 28164824 -95911348 - B2_Mm2 SINE B2 -34 161 2 1 799 242 95 0 23 chr9 28164824 28164867 -95911305 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 799 240 224 106 130 chr9 28165109 28165232 -95910940 + MER46C DNA MER2_type 16 135 -203 1 799 22 56 0 0 chr9 28166123 28166159 -95910013 + AT_rich Low_complexity Low_complexity 1 36 0 1 799 450 233 0 0 chr9 28167023 28167126 -95909046 - L1MA5 LINE L1 -23 6277 6175 1 799 253 273 0 0 chr9 28167590 28167645 -95908527 + GA-rich Low_complexity Low_complexity 6 60 0 1 799 299 310 144 45 chr9 28168265 28168508 -95907664 - MIRc SINE MIR 0 268 2 2 799 364 332 110 25 chr9 28169944 28170071 -95906101 - Lx8 LINE L1 0 7644 7515 2 799 374 0 22 0 chr9 28170071 28170117 -95906055 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 799 387 332 110 25 chr9 28170117 28170397 -95905775 - Lx8 LINE L1 -130 7514 7130 2 799 195 100 0 0 chr9 28170398 28170428 -95905744 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 799 414 139 0 0 chr9 28170444 28170516 -95905656 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 799 378 181 0 0 chr9 28170524 28170531 -95905641 + (CATATA)n Simple_repeat Simple_repeat 2 8 0 2 799 276 30 0 0 chr9 28170531 28170564 -95905608 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 799 378 181 0 0 chr9 28170564 28170639 -95905533 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 2 799 387 0 0 0 chr9 28173469 28173512 -95902660 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 799 311 303 11 43 chr9 28174801 28174894 -95901278 - PB1 SINE Alu -27 100 11 2 799 10149 87 24 5 chr9 28175013 28175125 -95901047 - Lx3_Mus LINE L1 0 7009 6873 2 799 194 0 39 0 chr9 28175125 28175151 -95901021 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 2 799 14367 87 14 4 chr9 28175151 28178108 -95898064 - Lx3_Mus LINE L1 -137 6872 3907 2 799 229 337 0 12 chr9 28178115 28178199 -95897973 - MLT1A1 LTR MaLR -8 400 318 2 799 378 296 8 60 chr9 28178221 28178354 -95897818 - B1_Mur1 SINE Alu -21 128 3 2 799 237 329 70 58 chr9 28178354 28178476 -95897696 + MT2B LTR ERVL 155 278 -323 2 799 345 304 45 0 chr9 28178376 28178488 -95897684 + B1F SINE Alu 18 134 -15 2 799 573 283 82 24 chr9 28178504 28178797 -95897375 + L1MC1 LINE L1 4455 4764 -1382 2 799 494 215 144 99 chr9 28178816 28178969 -95897203 + B3A SINE B2 1 166 -32 2 799 366 23 0 0 chr9 28178969 28179012 -95897160 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 799 327 215 144 99 chr9 28179012 28179039 -95897133 + B2_Mm2 SINE B2 166 189 -6 2 799 805 300 101 19 chr9 28179052 28179180 -95896992 + L1MC1 LINE L1 4799 4951 -1195 2 799 231 36 0 0 chr9 28179180 28179208 -95896964 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 799 805 300 101 19 chr9 28179208 28179507 -95896665 + L1MC1 LINE L1 4952 5261 -885 2 99 2052 301 60 22 chr9 28179653 28180544 -95895628 + L1MC1 LINE L1 5405 6328 -5 2 800 243 260 45 45 chr9 28180548 28180705 -95895467 + L1M4b LINE L1 2316 2472 -4862 2 800 1434 195 41 17 chr9 28180724 28181068 -95895104 + L1M4b LINE L1 2548 2899 -4435 2 800 324 102 0 0 chr9 28181475 28181524 -95894648 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 800 282 256 12 0 chr9 28181732 28181814 -95894358 + L1M4b LINE L1 3404 3486 -3848 2 800 6777 178 62 2 chr9 28181832 28183110 -95893062 - L1_Mur1 LINE L1 0 5886 4533 2 800 6039 33 24 0 chr9 28183110 28183781 -95892391 + L1Md_F2 LINE L1 5882 6568 -14 2 800 1002 301 137 94 chr9 28183801 28184508 -95891664 + L1M4 LINE L1 2204 2959 -3187 2 800 590 228 296 0 chr9 28184508 28184670 -95891502 + B3 SINE B2 1 210 -6 2 800 1002 301 137 94 chr9 28184670 28184853 -95891319 + L1M4 LINE L1 2960 3167 -2979 2 800 290 273 102 0 chr9 28184853 28184941 -95891231 + B3 SINE B2 92 188 -28 2 800 1002 301 137 94 chr9 28184941 28185536 -95890636 + L1M4 LINE L1 3168 3846 -2300 2 800 1173 231 0 5 chr9 28185536 28185753 -95890419 + B3 SINE B2 1 216 0 2 800 1002 301 137 94 chr9 28185753 28186128 -95890044 + L1M4 LINE L1 3847 4238 -1908 2 800 407 327 71 67 chr9 28186155 28186365 -95889807 + B4A SINE B4 1 211 -81 2 800 342 0 0 0 chr9 28186366 28186404 -95889768 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 800 226 269 62 25 chr9 28186420 28186500 -95889672 + L1M4 LINE L1 4265 4347 -1799 2 800 405 292 159 32 chr9 28186586 28186901 -95889271 + L1M4 LINE L1 4428 4782 -1364 2 800 309 95 53 13 chr9 28186914 28186989 -95889183 + (TCTCTG)n Simple_repeat Simple_repeat 1 78 0 2 800 460 331 17 0 chr9 28187025 28187203 -95888969 + L1M4 LINE L1 4923 5103 -1043 2 800 329 206 0 27 chr9 28187289 28187364 -95888808 + L1MB7 LINE L1 6098 6170 -14 2 800 266 378 102 85 chr9 28189710 28189956 -95886216 - LTR16A LTR ERVL -30 421 172 2 800 373 291 92 26 chr9 28190415 28190567 -95885605 + MIRb SINE MIR 4 169 -99 2 800 230 385 13 0 chr9 28193484 28193562 -95882610 - ID4 SINE ID -4 79 1 2 800 251 225 12 30 chr9 28193688 28193853 -95882319 + (CA)n Simple_repeat Simple_repeat 2 163 0 2 800 261 183 0 0 chr9 28194516 28194576 -95881596 + GA-rich Low_complexity Low_complexity 4 63 0 2 800 225 0 0 0 chr9 28195521 28195546 -95880626 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2 800 689 295 104 45 chr9 28196157 28196494 -95879678 + MLT2D LTR ERVL 9 365 -49 2 800 411 21 0 0 chr9 28197190 28197238 -95878934 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 800 184 322 0 78 chr9 28197790 28197854 -95878318 - L2b LINE L2 -22 3404 3346 2 800 1886 290 165 30 chr9 28197989 28198661 -95877511 - MTEa-int LTR MaLR -7 1573 811 2 800 2053 301 39 51 chr9 28198997 28199740 -95876432 - MTEa-int LTR MaLR -846 734 1 2 800 561 261 0 0 chr9 28199740 28199870 -95876302 - MTEa LTR MaLR 0 379 250 2 800 5015 142 74 9 chr9 28200166 28200978 -95875194 + Lx4B LINE L1 6189 7053 -5 2 800 228 293 79 13 chr9 28201062 28201138 -95875034 + B1F SINE Alu 32 112 -37 2 800 3285 78 14 2 chr9 28201188 28201613 -95874559 + L1_Mus2 LINE L1 6137 6566 0 2 800 242 254 0 17 chr9 28201925 28201985 -95874187 - MARNA DNA Mariner -342 244 186 2 800 441 129 0 0 chr9 28202194 28202264 -95873908 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 2 800 485 338 111 88 chr9 28202271 28202704 -95873468 + MLT2B5 LTR ERVL 65 524 -77 2 800 740 68 10 0 chr9 28202704 28202807 -95873365 + (TC)n Simple_repeat Simple_repeat 2 105 0 2 800 485 338 111 88 chr9 28202807 28202898 -95873274 + MLT2B5 LTR ERVL 525 601 0 2 800 224 312 115 9 chr9 28202943 28203056 -95873116 - L2b LINE L2 -11 3364 3240 2 800 398 325 0 61 chr9 28203439 28203570 -95872602 - PB1 SINE Alu -4 123 1 2 800 263 291 104 43 chr9 28203599 28203714 -95872458 - MIRm SINE MIR -132 144 23 2 800 656 278 74 4 chr9 28204118 28204349 -95871823 - B4A SINE B4 -43 249 3 2 800 360 0 0 0 chr9 28204874 28204914 -95871258 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 800 620 308 133 39 chr9 28205081 28205408 -95870764 + MLT1A LTR MaLR 1 361 -13 2 800 249 335 110 53 chr9 28206546 28206827 -95869345 + L2a LINE L2 3115 3411 -15 2 800 783 305 20 0 chr9 28206902 28207105 -95869067 - ID_B1 SINE B4 -12 212 6 2 800 22 35 0 0 chr9 28207136 28207165 -95869007 + AT_rich Low_complexity Low_complexity 1 29 0 2 800 417 54 0 0 chr9 28207233 28207289 -95868883 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 800 545 318 78 48 chr9 28208154 28208425 -95867747 + MER74A LTR ERVL 215 493 -65 2 800 351 0 0 0 chr9 28213627 28213666 -95862506 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 800 337 216 0 0 chr9 28214377 28214428 -95861744 - ID4 SINE ID -1 82 32 2 800 218 262 148 0 chr9 28215951 28216012 -95860160 + ID4_ SINE ID 1 70 -13 2 800 24 0 0 0 chr9 28216022 28216046 -95860126 + AT_rich Low_complexity Low_complexity 1 24 0 2 800 493 199 146 7 chr9 28216452 28216589 -95859583 - MER2 DNA MER2_type -116 229 74 2 800 273 178 19 38 chr9 28217966 28218124 -95858048 + (TA)n Simple_repeat Simple_repeat 2 156 0 2 800 284 0 28 0 chr9 28218819 28218855 -95857317 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 800 607 252 99 33 chr9 28218889 28219041 -95857131 - RSINE1 SINE B4 0 165 4 2 800 533 311 96 15 chr9 28219904 28220175 -95855997 - Tigger16a DNA Tigger -89 844 552 2 800 5341 64 3 5 chr9 28220306 28220951 -95855221 + L1_Mus3 LINE L1 5994 6637 -1 2 800 759 267 52 5 chr9 28222084 28222295 -95853877 + ID_B1 SINE B4 2 222 -2 2 800 226 253 68 78 chr9 28222751 28222854 -95853318 + LTR85c LTR Gypsy? 468 569 -254 2 800 364 326 48 97 chr9 28223077 28223325 -95852847 + MIR SINE MIR 13 248 -14 2 800 796 270 153 27 chr9 28223349 28223650 -95852522 - MER2 DNA MER2_type -4 341 3 2 800 207 0 0 0 chr9 28224414 28224437 -95851735 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 800 2682 61 3 22 chr9 28224446 28224815 -95851357 - L1_Mus1 LINE L1 0 6567 6206 2 800 828 225 88 5 chr9 28224889 28225081 -95851091 - B3 SINE B2 -3 213 6 2 800 962 281 119 43 chr9 28225154 28225916 -95850256 - L1MB3 LINE L1 -67 6116 5297 2 800 189 0 0 0 chr9 28225918 28225939 -95850233 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 2 800 350 292 33 53 chr9 28225939 28226091 -95850081 - L1M4c LINE L1 -837 5545 5397 2 800 783 290 58 106 chr9 28226327 28227353 -95848819 - L1M4c LINE L1 -1152 5224 4249 2 800 402 94 0 0 chr9 28227492 28227556 -95848616 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 800 1294 83 16 5 chr9 28227814 28228007 -95848165 - L1_Mus3 LINE L1 -6 6632 6438 2 800 1256 47 41 0 chr9 28228007 28228177 -95847995 + L1_Mus3 LINE L1 5703 5879 -759 2 800 922 317 79 56 chr9 28228180 28229239 -95846933 - L1M4c LINE L1 -2298 4078 2994 2 800 868 106 0 7 chr9 28229239 28229382 -95846790 + Lx LINE L1 6511 6652 -2 2 800 922 317 79 56 chr9 28229382 28229985 -95846187 - L1M4c LINE L1 -3383 2993 2377 2 800 384 277 58 80 chr9 28230026 28230250 -95845922 - L1M4c LINE L1 -4063 2321 2103 2 800 345 295 63 16 chr9 28230310 28230443 -95845729 - PB1D7 SINE Alu -11 139 8 2 800 241 365 31 102 chr9 28230363 28230491 -95845681 - ID_B1 SINE B4 -52 172 54 2 800 690 324 38 59 chr9 28230888 28231650 -95844522 - L1M4c LINE L1 -4648 1736 991 2 800 337 353 82 89 chr9 28231736 28232016 -95844156 - B4 SINE B4 -8 284 7 2 800 255 161 43 65 chr9 28232129 28232222 -95843950 - L1M4c LINE L1 -5518 866 776 2 800 271 292 139 29 chr9 28232812 28232985 -95843187 + L1MCa LINE L1 331 522 -5986 2 800 1080 258 67 100 chr9 28233026 28233845 -95842327 + L1MCa LINE L1 813 1604 -4904 2 800 294 286 0 0 chr9 28235435 28235498 -95840674 - MLT1L LTR MaLR -226 384 322 2 800 303 263 26 0 chr9 28236596 28236672 -95839500 - ID4 SINE ID -4 79 2 2 800 333 336 18 9 chr9 28236672 28236786 -95839386 - PB1D10 SINE Alu -2 115 1 2 800 526 68 0 0 chr9 28237276 28237349 -95838823 - L1MB7 LINE L1 -16 6168 6096 2 800 250 380 65 20 chr9 28237899 28238052 -95838120 - MER5A DNA MER1_type -22 167 8 2 800 269 291 56 51 chr9 28238743 28238957 -95837215 + L1ME3 LINE L1 5907 6121 -41 2 800 271 277 128 24 chr9 28241253 28241542 -95834630 + L1M5 LINE L1 5257 5575 -598 2 800 447 218 0 0 chr9 28243900 28244001 -95832171 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 800 225 0 0 0 chr9 28244001 28244026 -95832146 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 800 190 237 0 0 chr9 28244646 28244684 -95831488 - L2 LINE L2 -557 2862 2825 2 800 23 33 0 0 chr9 28249264 28249294 -95826878 + AT_rich Low_complexity Low_complexity 1 30 0 2 800 286 355 32 0 chr9 28249309 28249402 -95826770 - MIR SINE MIR -90 118 23 2 800 423 0 0 0 chr9 28249865 28249912 -95826260 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 800 710 282 39 5 chr9 28250008 28250211 -95825961 - B3 SINE B2 0 216 7 3 800 22 56 0 0 chr9 28251165 28251201 -95824971 + AT_rich Low_complexity Low_complexity 1 36 0 3 800 238 259 141 0 chr9 28251606 28251691 -95824481 - MIR SINE MIR -38 224 128 3 800 267 54 0 0 chr9 28252461 28252498 -95823674 + (A)n Simple_repeat Simple_repeat 1 37 0 3 800 1098 85 0 0 chr9 28253180 28253357 -95822815 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 800 555 289 37 53 chr9 28254853 28255043 -95821129 - B3A SINE B2 -8 190 4 3 800 215 329 85 0 chr9 28255160 28255242 -95820930 - MIRb SINE MIR -63 205 117 3 800 228 158 0 0 chr9 28258057 28258114 -95818058 + T-rich Low_complexity Low_complexity 1 57 0 3 800 851 128 7 0 chr9 28258750 28258891 -95817281 + (TC)n Simple_repeat Simple_repeat 2 143 0 3 800 480 156 0 84 chr9 28259956 28260075 -95816097 - Lx4B LINE L1 -66 6992 6884 3 800 548 280 68 0 chr9 28261566 28261698 -95814474 - B1F2 SINE Alu -7 142 2 3 800 3003 97 45 6 chr9 28261729 28262198 -95813974 - L1_Mur1 LINE L1 -346 5540 5054 3 800 767 230 63 0 chr9 28262197 28262217 -95813955 + Lx3A LINE L1 6738 6767 -214 3 800 420 71 0 0 chr9 28262217 28262273 -95813899 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 800 767 230 63 0 chr9 28262273 28262474 -95813698 + Lx3A LINE L1 6768 6972 -9 3 800 540 175 211 50 chr9 28262791 28262990 -95813182 + Lx9 LINE L1 7414 7644 0 3 800 21 0 0 0 chr9 28262990 28263011 -95813161 + AT_rich Low_complexity Low_complexity 1 21 0 3 800 435 38 0 0 chr9 28263184 28263237 -95812935 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 3 800 459 175 68 47 chr9 28263239 28263431 -95812741 - RMER17C LTR ERVK -135 275 80 3 800 224 54 0 51 chr9 28266460 28266499 -95809673 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 3 800 261 0 0 0 chr9 28267539 28267568 -95808604 + (T)n Simple_repeat Simple_repeat 1 29 0 3 800 180 280 158 13 chr9 28267603 28267679 -95808493 - MIRb SINE MIR -162 106 20 3 800 423 0 0 0 chr9 28268874 28268921 -95807251 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 800 239 210 48 24 chr9 28269374 28269457 -95806715 - RLTR25A LTR ERVK -82 1021 937 3 800 289 314 0 0 chr9 28269551 28269621 -95806551 + ID4_ SINE ID 1 70 -13 3 800 496 62 12 24 chr9 28269698 28269780 -95806392 + (TATG)n Simple_repeat Simple_repeat 3 83 0 3 800 321 155 0 0 chr9 28269786 28269844 -95806328 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3 800 246 128 0 0 chr9 28269857 28269896 -95806276 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 800 312 119 0 0 chr9 28269897 28269956 -95806216 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 800 301 288 0 0 chr9 28270064 28270137 -95806035 - MLT2B4 LTR ERVL -483 73 1 3 800 191 294 66 66 chr9 28270602 28270693 -95805479 - MIR SINE MIR -56 152 62 3 800 198 103 0 0 chr9 28270823 28270852 -95805320 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 800 180 0 0 0 chr9 28270857 28270877 -95805295 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 800 528 16 0 0 chr9 28270877 28270937 -95805235 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 800 1929 125 24 63 chr9 28274569 28274903 -95801269 + ORR1A4 LTR MaLR 1 321 -8 3 800 1027 239 10 0 chr9 28275064 28275269 -95800903 - B3 SINE B2 -9 207 1 3 800 942 83 0 0 chr9 28275352 28275485 -95800687 + (GAA)n Simple_repeat Simple_repeat 3 135 0 3 800 1020 292 87 23 chr9 28275552 28276217 -95799955 - L1MA8 LINE L1 -127 6164 5457 3 800 21 36 0 0 chr9 28276225 28276253 -95799919 + AT_rich Low_complexity Low_complexity 1 28 0 3 800 182 359 51 0 chr9 28276353 28276431 -95799741 + MIRm SINE MIR 96 177 -99 3 800 430 344 24 24 chr9 28276818 28276985 -95799187 + B4A SINE B4 2 168 -124 3 800 183 80 0 0 chr9 28278884 28278909 -95797263 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 800 1230 166 5 0 chr9 28279701 28279900 -95796272 - Lx5 LINE L1 -1024 6026 5827 3 800 369 179 74 0 chr9 28279937 28280032 -95796140 + Lx5 LINE L1 6949 7050 0 3 800 261 204 0 0 chr9 28280645 28280694 -95795478 + MIR SINE MIR 92 140 -122 3 800 5920 129 41 23 chr9 28281351 28282292 -95793880 - RMER17B LTR ERVK 0 958 1 3 800 467 82 14 0 chr9 28282660 28282733 -95793439 + (TATG)n Simple_repeat Simple_repeat 1 74 0 3 800 560 232 48 48 chr9 28283803 28283948 -95792224 - ID_B1 SINE B4 -1 223 79 3 800 227 316 38 0 chr9 28284226 28284305 -95791867 - MIRc SINE MIR -87 181 100 3 800 571 311 204 11 chr9 28286882 28287338 -95788834 + Tigger7 DNA MER2_type 45 588 -1903 3 800 628 220 65 45 chr9 28287369 28287569 -95788603 + Tigger7 DNA MER2_type 2229 2427 -64 3 800 212 382 9 26 chr9 28288021 28288134 -95788038 + MIRb SINE MIR 119 229 -39 3 800 388 363 115 21 chr9 28288958 28289245 -95786927 + Tigger8 DNA MER2_type 3 316 -350 3 800 219 256 0 0 chr9 28289953 28289996 -95786176 + (CAT)n Simple_repeat Simple_repeat 3 45 0 3 800 363 370 128 47 chr9 28290713 28291206 -95784966 + MER21B LTR ERV1 224 756 -107 3 800 556 236 73 0 chr9 28291486 28291596 -95784576 + B3A SINE B2 1 118 -80 3 800 24 32 0 0 chr9 28291631 28291662 -95784510 + AT_rich Low_complexity Low_complexity 1 31 0 3 800 263 337 24 24 chr9 28292165 28292332 -95783840 + L1MB8 LINE L1 5832 5998 -180 3 800 1674 243 39 9 chr9 28292528 28292968 -95783204 - Charlie1a DNA MER1_type -584 871 419 3 800 231 214 122 54 chr9 28292972 28293046 -95783126 - MER58C DNA MER1_type -5 210 132 3 800 528 45 0 0 chr9 28293046 28293113 -95783059 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 800 2364 11 7 0 chr9 28293428 28293704 -95782468 + ORR1A0 LTR MaLR 1 278 -68 3 800 891 43 0 0 chr9 28293691 28293808 -95782364 - ORR1A0-int LTR MaLR -1675 117 1 3 800 3028 55 0 3 chr9 28293808 28294155 -95782017 - ORR1A0 LTR MaLR 0 346 1 3 800 708 345 66 40 chr9 28294174 28294551 -95781621 - Charlie1a DNA MER1_type -1068 387 1 3 800 287 252 121 40 chr9 28294554 28294678 -95781494 - MER34 LTR ERV1 -2 569 436 3 800 737 292 267 41 chr9 28294886 28295012 -95781160 - RMER1C Other Other -21 1321 1176 3 800 288 0 0 0 chr9 28295012 28295044 -95781128 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 800 737 292 267 41 chr9 28295044 28295532 -95780640 - RMER1C Other Other -167 1175 569 3 800 452 258 0 0 chr9 28295961 28296050 -95780122 - MER34 LTR ERV1 -453 89 1 3 800 194 324 100 18 chr9 28296182 28296292 -95779880 + MIRb SINE MIR 116 234 -34 3 800 426 348 101 19 chr9 28296657 28296915 -95779257 - Charlie4 DNA MER1_type -1669 292 14 3 800 441 0 0 0 chr9 28297336 28297385 -95778787 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 800 918 256 56 148 chr9 28298689 28299189 -95776983 - RLTR12B LTR ERVK -34 494 41 3 800 195 308 39 0 chr9 28299253 28299305 -95776867 + MIRm SINE MIR 103 156 -120 3 800 261 311 24 24 chr9 28299616 28299741 -95776431 + B1F SINE Alu 25 149 0 3 800 25 0 0 0 chr9 28300441 28300466 -95775706 + AT_rich Low_complexity Low_complexity 1 25 0 3 800 387 152 0 0 chr9 28302220 28302299 -95773873 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 800 359 279 26 18 chr9 28303624 28303737 -95772435 + MER58B DNA MER1_type 211 324 -17 3 800 251 379 10 40 chr9 28303873 28303972 -95772200 - PB1D10 SINE Alu -21 96 1 3 800 995 97 0 56 chr9 28304088 28304230 -95771942 - B1_Mm SINE Alu -13 134 1 3 800 396 287 37 9 chr9 28304932 28305041 -95771131 - PB1D10 SINE Alu -5 112 1 3 800 1013 150 0 6 chr9 28306564 28306745 -95769427 + GA-rich Low_complexity Low_complexity 1 180 0 3 800 181 250 86 54 chr9 28307161 28307254 -95768918 - MIRb SINE MIR -117 151 56 3 800 397 349 9 77 chr9 28307413 28307646 -95768526 - MER102a DNA MER1_type -107 223 7 3 800 1076 133 198 21 chr9 28309072 28309264 -95766908 - URR1A DNA MER1_type 0 226 1 3 800 261 342 0 0 chr9 28309865 28309941 -95766231 + ID4_ SINE ID 2 77 -6 3 800 220 347 0 0 chr9 28309941 28310016 -95766156 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 800 1411 204 38 14 chr9 28310092 28310460 -95765712 + RCHARR1 DNA MER1_type 521 897 -77 3 800 873 258 242 7 chr9 28310459 28310736 -95765436 + ORR1E LTR MaLR 9 350 -9 3 801 363 252 155 39 chr9 28312453 28312556 -95763616 - PB1D10 SINE Alu -2 115 1 3 801 470 264 168 38 chr9 28313035 28313244 -95762928 + MLT1C LTR MaLR 1 236 -231 3 801 431 307 154 32 chr9 28314079 28314325 -95761847 - B4 SINE B4 -16 276 1 3 801 369 0 0 0 chr9 28314680 28314721 -95761451 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 801 216 0 0 0 chr9 28316228 28316252 -95759920 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 801 381 58 0 0 chr9 28316252 28316303 -95759869 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 801 26 50 0 0 chr9 28316758 28316798 -95759374 + AT_rich Low_complexity Low_complexity 1 40 0 3 801 405 0 0 0 chr9 28317240 28317285 -95758887 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 801 333 0 0 0 chr9 28317285 28317321 -95758851 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 801 603 27 0 0 chr9 28317452 28317525 -95758647 + (TC)n Simple_repeat Simple_repeat 1 73 0 3 801 201 39 0 0 chr9 28317526 28317552 -95758620 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 801 299 239 11 32 chr9 28317557 28317652 -95758520 - Lx9 LINE L1 -180 7464 7372 3 801 314 270 0 16 chr9 28318587 28318651 -95757521 + ID2 SINE ID 5 67 -16 3 801 272 27 27 0 chr9 28318654 28318691 -95757481 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 801 474 18 0 0 chr9 28318839 28318894 -95757278 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 801 1339 0 0 0 chr9 28319202 28319350 -95756822 - L1Md_T LINE L1 0 6582 6435 4 801 274 314 118 24 chr9 28319351 28319478 -95756694 - MIRb SINE MIR -32 236 98 4 801 406 256 149 6 chr9 28319677 28319858 -95756314 - Tigger7 DNA MER2_type -46 2445 2239 4 801 519 326 171 27 chr9 28319871 28320170 -95756002 - Tigger7 DNA MER2_type -2096 395 54 4 801 316 328 32 48 chr9 28321906 28322103 -95754069 - MIRb SINE MIR -7 255 66 4 801 618 156 0 72 chr9 28323879 28324072 -95752100 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 801 251 203 0 0 chr9 28324464 28324528 -95751644 + T-rich Low_complexity Low_complexity 1 64 0 4 801 240 143 0 0 chr9 28324918 28324960 -95751212 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 4 801 762 189 67 55 chr9 28325165 28325334 -95750838 - MTD LTR MaLR -13 406 251 4 801 1095 109 0 0 chr9 28325334 28325471 -95750701 + B1_Mus2 SINE Alu 1 137 -10 4 801 943 100 13 0 chr9 28325471 28325621 -95750551 + (GGA)n Simple_repeat Simple_repeat 3 154 0 4 801 762 210 51 68 chr9 28325621 28325692 -95750480 - MTD LTR MaLR -169 250 177 4 801 3886 38 5 0 chr9 28325692 28326283 -95749889 - L1Md_F2 LINE L1 -544 6038 5440 4 801 1627 54 5 0 chr9 28326282 28326487 -95749685 + L1Md_F2 LINE L1 5184 5389 -494 4 801 335 250 24 24 chr9 28326487 28326569 -95749603 - MTD LTR MaLR -337 82 1 4 801 384 103 0 0 chr9 28327100 28327158 -95749014 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 801 3509 139 17 17 chr9 28327306 28327831 -95748341 + Lx4A LINE L1 6531 7055 -3 4 801 798 258 77 0 chr9 28328340 28328534 -95747638 + B3 SINE B2 3 211 -5 4 801 558 43 0 0 chr9 28328584 28328653 -95747519 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 4 801 737 63 0 0 chr9 28328806 28328901 -95747271 - BC1_Mm scRNA scRNA -57 95 1 4 801 26 64 0 0 chr9 28329082 28329129 -95747043 + AT_rich Low_complexity Low_complexity 1 47 0 4 801 7691 53 4 1 chr9 28329216 28330159 -95746013 - L1Md_F2 LINE L1 -12 6570 5653 4 801 772 260 109 23 chr9 28330208 28330464 -95745708 - B4A SINE B4 -14 278 1 4 801 22 56 0 0 chr9 28331895 28331931 -95744241 + AT_rich Low_complexity Low_complexity 1 36 0 4 801 700 123 0 48 chr9 28332213 28332224 -95743948 + (TAGA)n Simple_repeat Simple_repeat 3 12 0 4 801 201 39 0 0 chr9 28332224 28332250 -95743922 + (CATA)n Simple_repeat Simple_repeat 4 29 0 4 801 700 123 0 48 chr9 28332250 28332425 -95743747 + (TAGA)n Simple_repeat Simple_repeat 1 168 0 4 801 265 270 11 0 chr9 28332425 28332514 -95743658 + (TA)n Simple_repeat Simple_repeat 1 90 0 4 801 249 98 0 0 chr9 28332517 28332558 -95743614 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 4 801 222 282 42 14 chr9 28332586 28332658 -95743514 - L3 LINE CR1 -3516 973 900 4 801 8338 37 0 0 chr9 28332758 28333981 -95742191 - L1Md_T LINE L1 0 6582 5360 4 801 890 141 6 0 chr9 28334853 28335009 -95741163 + (TTCC)n Simple_repeat Simple_repeat 2 158 0 4 801 210 270 0 0 chr9 28335008 28335071 -95741101 + CT-rich Low_complexity Low_complexity 3 65 0 4 801 646 278 62 0 chr9 28335092 28335286 -95740886 + MER58B DNA MER1_type 81 286 -55 4 801 337 188 41 14 chr9 28335856 28336002 -95740170 + (TA)n Simple_repeat Simple_repeat 1 150 0 4 801 631 270 185 19 chr9 28336125 28336496 -95739676 - L1MA4A LINE L1 -367 5936 5475 4 801 262 252 139 20 chr9 28337327 28337428 -95738744 + MLT2B4 LTR ERVL 26 138 -418 4 801 348 94 0 0 chr9 28337467 28337520 -95738652 + (CAA)n Simple_repeat Simple_repeat 1 53 0 4 801 819 206 42 14 chr9 28338100 28338243 -95737929 + B1_Mur1 SINE Alu 2 148 -1 4 801 21 0 0 0 chr9 28338243 28338264 -95737908 + AT_rich Low_complexity Low_complexity 1 21 0 4 801 204 125 0 0 chr9 28338490 28338522 -95737650 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 4 801 259 212 20 0 chr9 28339852 28339930 -95736242 + B1F SINE Alu 1 82 -232 4 801 221 250 0 128 chr9 28339862 28339940 -95736232 + ID_B1 SINE B4 94 161 -63 4 801 207 0 0 0 chr9 28339943 28339966 -95736206 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 801 237 377 27 20 chr9 28340751 28340900 -95735272 - L2b LINE L2 -11 3364 3215 4 801 180 325 57 32 chr9 28341063 28341187 -95734985 + L2 LINE L2 1952 2078 -1341 4 801 22 35 0 0 chr9 28342126 28342155 -95734017 + GC_rich Low_complexity Low_complexity 1 29 0 4 801 226 262 24 59 chr9 28342988 28343073 -95733099 + RLTR13D5 LTR ERVK 22 103 -920 4 801 21 36 0 0 chr9 28343324 28343352 -95732820 + AT_rich Low_complexity Low_complexity 1 28 0 4 801 414 292 0 0 chr9 28344044 28344133 -95732039 - B1_Mur3 SINE Alu -60 89 1 4 801 301 253 10 94 chr9 28344048 28344144 -95732028 - MT2B LTR ERVL -361 240 153 4 801 233 259 36 18 chr9 28344714 28344769 -95731403 - ID4_ SINE ID -2 81 26 4 801 1946 193 48 13 chr9 28344903 28345296 -95730876 + MTD LTR MaLR 1 407 -12 4 801 269 322 76 32 chr9 28345595 28345752 -95730420 - L1MEf LINE L1 -3385 2761 2598 4 801 849 324 108 35 chr9 28346364 28347323 -95728849 - L1MEf LINE L1 -4481 1761 723 4 801 387 0 0 0 chr9 28348031 28348074 -95728098 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 801 286 270 43 12 chr9 28348165 28348269 -95727903 - MIR SINE MIR -1 267 158 4 801 2297 126 3 30 chr9 28350618 28350954 -95725218 + ORR1A2 LTR MaLR 1 327 0 4 801 622 198 0 0 chr9 28350986 28351082 -95725090 + B1_Mur2 SINE Alu 3 98 -51 4 801 786 252 73 34 chr9 28351205 28351439 -95724733 - MTD LTR MaLR -176 243 1 4 801 540 318 53 25 chr9 28351478 28351759 -95724413 + L1M4 LINE L1 3396 3684 -2462 4 801 841 273 73 38 chr9 28351786 28352113 -95724059 + Lx6 LINE L1 7079 7417 -43 4 801 427 145 0 12 chr9 28352113 28352197 -95723975 + Lx LINE L1 6569 6651 -3 4 801 841 273 73 38 chr9 28352197 28352212 -95723960 + Lx6 LINE L1 7418 7433 -27 4 801 582 299 50 38 chr9 28353438 28353699 -95722473 + MER115 DNA Tip100 420 683 -10 4 801 210 331 85 71 chr9 28358127 28358348 -95717824 - L2b LINE L2 -28 3359 3123 4 801 236 297 165 32 chr9 28358587 28358775 -95717397 + MIR SINE MIR 21 233 -29 4 801 375 347 98 8 chr9 28358936 28359180 -95716992 - L2b LINE L2 -700 2719 2454 4 801 260 351 11 11 chr9 28360448 28360543 -95715629 + MER5A DNA MER1_type 18 112 -77 4 801 1030 81 73 0 chr9 28360736 28360872 -95715300 - B1_Mm SINE Alu 0 147 2 4 801 310 297 0 13 chr9 28361776 28361851 -95714321 + B4A SINE B4 2 75 -217 4 801 399 298 114 62 chr9 28362041 28362399 -95713773 + RMER10A LTR ERVL 65 441 -1 4 801 251 316 48 64 chr9 28362549 28362574 -95713598 - PB1 SINE Alu -2 125 3 4 801 306 309 60 30 chr9 28362574 28362674 -95713498 - ID_B1 SINE B4 -38 186 84 4 801 612 0 0 0 chr9 28362696 28362764 -95713408 + (GA)n Simple_repeat Simple_repeat 2 69 0 4 801 832 312 89 40 chr9 28363175 28363298 -95712874 - MER89 LTR ERV1 0 559 436 4 801 351 0 0 0 chr9 28363298 28363337 -95712835 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 801 832 312 89 40 chr9 28363337 28363687 -95712485 - MER89 LTR ERV1 -124 435 63 4 801 324 255 0 78 chr9 28363840 28363955 -95712217 + PB1D10 SINE Alu 11 116 -1 4 801 844 308 40 67 chr9 28364303 28364630 -95711542 + MER2 DNA MER2_type 21 338 -7 4 801 2564 212 58 14 chr9 28364692 28365243 -95710929 - RMER15 LTR ERVL 0 575 1 4 801 447 92 0 0 chr9 28365865 28365930 -95710242 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 801 795 175 0 0 chr9 28366725 28366879 -95709293 + CT-rich Low_complexity Low_complexity 2 155 0 4 801 600 337 60 63 chr9 28367003 28367351 -95708821 + ORR1E LTR MaLR 3 349 -10 4 801 357 320 130 82 chr9 28367526 28367856 -95708316 - MLT2C2 LTR ERVL -5 459 114 4 801 1133 82 0 14 chr9 28368268 28368416 -95707756 + B1_Mus2 SINE Alu 2 147 0 4 801 209 30 0 57 chr9 28368423 28368458 -95707714 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 4 801 354 80 0 0 chr9 28369206 28369256 -95706916 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 801 245 294 43 0 chr9 28372464 28372556 -95703616 + MTEa LTR MaLR 3 98 -281 4 801 448 277 33 8 chr9 28372948 28373068 -95703104 + RSINE1 SINE B4 2 124 -41 4 801 716 87 16 16 chr9 28373068 28373197 -95702975 + (CA)n Simple_repeat Simple_repeat 2 130 0 4 801 2148 182 123 39 chr9 28374002 28374540 -95701632 + Lx9 LINE L1 7062 7644 0 4 801 1613 269 11 5 chr9 28374702 28375079 -95701093 - MTE2a LTR MaLR 0 379 1 4 801 235 330 67 59 chr9 28375141 28375260 -95700912 + PB1D7 SINE Alu 1 120 0 4 801 850 215 173 0 chr9 28375752 28375943 -95700229 - URR1B DNA MER1_type -1 224 1 4 801 195 100 0 0 chr9 28377543 28377573 -95698599 + (TGGG)n Simple_repeat Simple_repeat 1 30 0 4 801 387 17 33 16 chr9 28380714 28380775 -95695397 + (TAA)n Simple_repeat Simple_repeat 2 63 0 4 801 432 316 80 51 chr9 28380890 28381127 -95695045 - Tigger13a DNA MER2_type -124 647 404 4 801 201 331 152 14 chr9 28381453 28381591 -95694581 + MIRc SINE MIR 22 178 -90 4 801 204 200 0 0 chr9 28381795 28381840 -95694332 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 4 801 329 291 114 38 chr9 28381875 28382139 -95694033 - L1MC4 LINE L1 -144 7898 7615 4 801 542 246 8 8 chr9 28382162 28382285 -95693887 + MLT1A0 LTR MaLR 15 137 -228 4 801 578 301 71 6 chr9 28382344 28382622 -95693550 - L1MC4 LINE L1 -391 7491 7195 4 801 189 336 116 8 chr9 28383123 28383252 -95692920 + MIRb SINE MIR 110 252 -16 4 801 892 146 11 68 chr9 28383381 28383542 -95692630 + B2_Mm2 SINE B2 29 185 -10 4 801 1079 116 0 7 chr9 28383542 28383690 -95692482 + B1_Mus1 SINE Alu 2 148 0 4 801 291 71 0 0 chr9 28383692 28383734 -95692438 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4 801 892 146 11 68 chr9 28383734 28383746 -95692426 + B2_Mm2 SINE B2 186 195 0 4 801 338 342 50 46 chr9 28384284 28384490 -95691682 + B4 SINE B4 83 281 -11 4 801 186 167 0 0 chr9 28384500 28384536 -95691636 + (CATA)n Simple_repeat Simple_repeat 4 39 0 4 801 440 311 88 55 chr9 28384559 28384831 -95691341 + L1MC4 LINE L1 6909 7189 -853 5 801 221 380 35 0 chr9 28385315 28385428 -95690744 + MIRb SINE MIR 20 136 -132 5 801 385 288 57 6 chr9 28385828 28385985 -95690187 - HAL1-2a_MD LINE L1 -512 2512 2348 5 801 1682 267 57 55 chr9 28386343 28386851 -95689321 + MER44B DNA MER2_type 41 549 -1 5 801 21 36 0 0 chr9 28387198 28387226 -95688946 + AT_rich Low_complexity Low_complexity 1 28 0 5 801 446 319 17 73 chr9 28387565 28387744 -95688428 - MT2A LTR ERVL -105 428 260 5 801 1173 247 222 65 chr9 28387767 28387848 -95688324 + MT2B LTR ERVL 1 87 -514 5 801 972 55 0 0 chr9 28387848 28387975 -95688197 + (TG)n Simple_repeat Simple_repeat 2 128 0 5 801 1173 247 222 65 chr9 28387975 28388370 -95687802 + MT2B LTR ERVL 88 559 -42 5 801 483 48 0 0 chr9 28388370 28388432 -95687740 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 5 801 958 241 229 66 chr9 28388432 28388473 -95687699 + MT2B LTR ERVL 560 600 -1 5 801 821 208 11 16 chr9 28388609 28388794 -95687378 - RCHARR1 DNA MER1_type -63 911 728 5 801 389 303 163 80 chr9 28388794 28389045 -95687127 + B4 SINE B4 2 273 -19 5 801 2939 227 51 19 chr9 28389100 28389822 -95686350 - RCHARR1 DNA MER1_type -226 748 4 5 801 22 56 0 0 chr9 28389907 28389943 -95686229 + AT_rich Low_complexity Low_complexity 1 36 0 5 801 735 270 2 11 chr9 28390014 28390192 -95685980 - B3 SINE B2 -18 175 7 5 801 846 297 36 66 chr9 28390343 28390707 -95685465 + ORR1E LTR MaLR 1 353 -6 5 801 2085 318 61 72 chr9 28390727 28391867 -95684305 + ORR1E-int LTR MaLR 3 1343 -27 5 801 555 298 28 21 chr9 28391936 28392199 -95683973 + Lx8 LINE L1 6763 7025 -671 5 801 29 60 0 0 chr9 28392326 28392376 -95683796 + AT_rich Low_complexity Low_complexity 1 50 0 5 801 402 239 0 0 chr9 28392523 28392611 -95683561 + RMER1B Other Other 12 99 -967 5 801 2564 228 57 2 chr9 28392604 28393197 -95682975 + RMER1B Other Other 401 1026 -40 5 801 241 104 62 0 chr9 28393208 28393256 -95682916 - RMER1B Other Other 0 1066 1016 5 801 825 267 158 27 chr9 28393273 28393608 -95682564 - MTE2b LTR MaLR 0 379 1 5 801 387 0 0 0 chr9 28394265 28394308 -95681864 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 801 243 0 0 0 chr9 28394364 28394391 -95681781 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 801 1113 99 0 0 chr9 28395846 28396007 -95680165 + (TCTCCC)n Simple_repeat Simple_repeat 3 163 0 5 801 367 363 31 5 chr9 28396530 28396721 -95679451 + MIRb SINE MIR 18 213 -55 5 801 192 135 0 0 chr9 28397227 28397264 -95678908 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 5 801 692 124 14 7 chr9 28397272 28397410 -95678762 - Lx LINE L1 -1 6653 6515 5 801 268 292 166 55 chr9 28397746 28397927 -95678245 - MLT1A0 LTR MaLR -149 216 16 5 801 378 319 75 117 chr9 28398067 28398493 -95677679 + L2a LINE L2 2171 2578 -841 5 801 613 337 77 18 chr9 28398507 28398779 -95677393 - MLT1A0 LTR MaLR -1 364 77 5 801 208 378 69 41 chr9 28398856 28399074 -95677098 + L2a LINE L2 2638 2861 -558 5 801 186 43 0 0 chr9 28399094 28399117 -95677055 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 801 190 321 82 82 chr9 28399212 28399456 -95676716 + L2a LINE L2 3180 3423 -3 5 801 495 0 0 0 chr9 28399671 28399726 -95676446 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 801 2392 152 84 64 chr9 28399809 28400220 -95675952 - RLTR28 LTR ERVL 0 524 119 5 801 186 43 0 0 chr9 28400220 28400243 -95675929 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 801 2392 152 84 64 chr9 28400243 28400345 -95675827 - RLTR28 LTR ERVL -406 118 1 5 801 393 110 0 0 chr9 28400445 28400518 -95675654 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 5 801 240 352 164 9 chr9 28401259 28401420 -95674752 - MIRb SINE MIR -45 217 47 5 801 537 16 0 0 chr9 28402147 28402209 -95673963 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 801 208 211 0 0 chr9 28402211 28402249 -95673923 + C-rich Low_complexity Low_complexity 1 38 0 5 801 525 92 0 0 chr9 28402686 28402762 -95673410 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 801 2509 162 112 19 chr9 28403271 28403806 -95672366 + RMER4B LTR ERVK 1 585 0 5 801 675 332 114 15 chr9 28405992 28406316 -95669856 - MLT1A0 LTR MaLR 0 365 10 5 801 187 307 181 17 chr9 28406673 28406789 -95669383 - MIRm SINE MIR -118 158 24 5 801 295 154 0 30 chr9 28408193 28408260 -95667912 + (ATG)n Simple_repeat Simple_repeat 1 65 0 5 801 444 67 0 0 chr9 28408259 28408319 -95667853 + (GGA)n Simple_repeat Simple_repeat 1 60 0 5 801 237 351 13 13 chr9 28408477 28408552 -95667620 + ID_B1 SINE B4 82 156 -68 5 801 795 40 0 0 chr9 28408567 28408666 -95667506 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 801 431 282 66 46 chr9 28408866 28408890 -95667282 - MER34A1 LTR ERV1 -3 584 564 5 801 1956 163 48 14 chr9 28408890 28409245 -95666927 + ORR1B2 LTR MaLR 1 367 0 5 801 431 282 66 46 chr9 28409245 28409417 -95666755 - MER34A1 LTR ERV1 -24 563 384 5 801 227 369 0 0 chr9 28409436 28409501 -95666671 - ID4_ SINE ID -3 80 16 5 801 227 347 13 89 chr9 28409496 28409654 -95666518 - MER34A1 LTR ERV1 -194 377 232 5 801 300 53 0 0 chr9 28409772 28409810 -95666362 + (TGG)n Simple_repeat Simple_repeat 1 38 0 5 801 39 50 0 0 chr9 28409927 28409987 -95666185 + AT_rich Low_complexity Low_complexity 1 60 0 5 801 614 298 138 32 chr9 28411082 28411328 -95664844 + B4 SINE B4 1 272 -20 5 801 459 0 0 0 chr9 28411396 28411447 -95664725 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 801 481 15 30 0 chr9 28411447 28411512 -95664660 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 801 381 354 87 15 chr9 28412254 28412449 -95663723 - MLT1F1 LTR MaLR -9 560 352 5 801 805 203 0 0 chr9 28412783 28412926 -95663246 + B1_Mur4 SINE Alu 1 143 -7 5 801 834 103 0 0 chr9 28412939 28413075 -95663097 + (GA)n Simple_repeat Simple_repeat 1 136 0 5 801 198 0 0 0 chr9 28413078 28413100 -95663072 + (A)n Simple_repeat Simple_repeat 1 22 0 5 801 2389 315 112 14 chr9 28413540 28414693 -95661479 - Lx8 LINE L1 -2 7471 6205 5 801 1603 245 121 16 chr9 28415054 28415684 -95660488 + L1_Rod LINE L1 5138 5833 -14 5 801 180 376 35 0 chr9 28415785 28415870 -95660302 + L2b LINE L2 1972 2059 -1360 5 801 522 0 0 0 chr9 28415928 28415986 -95660186 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 801 474 289 91 0 chr9 28416013 28416134 -95660038 - RSINE1 SINE B4 -23 142 11 5 801 186 327 150 0 chr9 28416822 28416935 -95659237 + L2b LINE L2 2245 2374 -1045 5 801 21 36 0 0 chr9 28417286 28417314 -95658858 + AT_rich Low_complexity Low_complexity 1 28 0 5 801 217 403 16 8 chr9 28417705 28417830 -95658342 + L2b LINE L2 3056 3181 -194 5 801 369 0 0 0 chr9 28418884 28418925 -95657247 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 801 423 0 0 0 chr9 28418925 28418971 -95657201 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 801 269 303 63 32 chr9 28419103 28419229 -95656943 - L2a LINE L2 -1 3425 3296 5 801 962 150 0 20 chr9 28419855 28420005 -95656167 + B1_Mus1 SINE Alu 1 147 -1 5 801 612 0 0 0 chr9 28420828 28420896 -95655276 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 5 801 387 283 164 15 chr9 28421860 28422061 -95654111 - MIRb SINE MIR -20 248 18 5 801 1810 208 22 24 chr9 28423254 28423668 -95652504 + RMER10A LTR ERVL 27 439 -3 5 801 915 130 0 0 chr9 28423690 28423836 -95652336 + (TC)n Simple_repeat Simple_repeat 2 147 0 5 801 270 0 0 0 chr9 28424206 28424236 -95651936 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 5 801 219 36 0 0 chr9 28424831 28424859 -95651313 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 801 301 345 168 37 chr9 28426236 28426558 -95649614 + Arthur1B DNA Tip100 28 391 -834 5 801 1302 71 50 0 chr9 28426606 28426788 -95649384 + B2_Mm2 SINE B2 2 192 -3 5 801 1028 187 113 0 chr9 28427336 28427539 -95648633 - URR1A DNA MER1_type 0 226 1 5 801 555 108 0 0 chr9 28428883 28428976 -95647196 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 5 801 247 256 52 29 chr9 28429019 28429192 -95646980 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 5 801 463 326 129 42 chr9 28429718 28430051 -95646121 - MLT1A0 LTR MaLR 0 365 4 5 801 390 42 0 0 chr9 28433432 28433480 -95642692 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 801 669 70 0 0 chr9 28433864 28433964 -95642208 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 801 362 257 29 0 chr9 28435506 28435611 -95640561 + L1MD3 LINE L1 7180 7287 -595 5 801 612 304 219 19 chr9 28435704 28436293 -95639879 + L1MD3 LINE L1 7277 7983 -12 5 801 402 21 0 0 chr9 28436295 28436342 -95639830 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 5 801 28 0 0 0 chr9 28436978 28437006 -95639166 + AT_rich Low_complexity Low_complexity 1 28 0 5 801 319 302 115 16 chr9 28437794 28437976 -95638196 - L3 LINE CR1 -212 4277 4078 5 801 799 191 125 5 chr9 28439407 28439607 -95636565 - URR1A DNA MER1_type 0 226 3 5 801 387 0 0 0 chr9 28439969 28440012 -95636160 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 801 822 219 102 0 chr9 28440405 28440592 -95635580 + B3 SINE B2 3 208 -8 5 801 2233 306 35 37 chr9 28440878 28441816 -95634356 - Lx7 LINE L1 -421 7275 6340 5 802 448 302 66 6 chr9 28442909 28443226 -95632946 + L1M3c LINE L1 1160 1495 -4646 5 802 377 306 32 48 chr9 28443229 28443463 -95632709 - MER47B DNA MER2_type -1 417 124 5 802 225 374 30 20 chr9 28443593 28443694 -95632478 - MER47B DNA MER2_type -316 102 1 5 802 327 316 80 25 chr9 28443840 28444165 -95632007 + L1M4c LINE L1 1409 1751 -4633 5 802 691 120 15 15 chr9 28444249 28444384 -95631788 + Lx4A LINE L1 6923 7057 -1 5 802 406 289 75 63 chr9 28444805 28445138 -95631034 + L1M4c LINE L1 2399 2735 -3644 5 802 206 118 0 0 chr9 28445695 28445729 -95630443 + (T)n Simple_repeat Simple_repeat 1 34 0 5 802 381 250 58 36 chr9 28445991 28446128 -95630044 - MIR SINE MIR -9 253 114 5 802 356 360 28 9 chr9 28446503 28446687 -95629485 + B4A SINE B4 104 291 -1 5 802 1176 64 29 0 chr9 28447730 28447903 -95628269 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 802 260 241 13 0 chr9 28447915 28447994 -95628178 + CT-rich Low_complexity Low_complexity 2 81 0 5 802 378 0 0 0 chr9 28447994 28448036 -95628136 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 802 262 333 18 44 chr9 28448075 28448188 -95627984 + MLT1A0 LTR MaLR 1 110 -255 5 802 233 279 83 37 chr9 28448333 28448441 -95627731 + MLT1A0 LTR MaLR 294 406 -2 5 802 734 183 181 31 chr9 28449217 28449443 -95626729 + RMER1C Other Other 1066 1325 -17 5 802 23 0 0 0 chr9 28449445 28449468 -95626704 + AT_rich Low_complexity Low_complexity 1 23 0 6 802 552 56 0 0 chr9 28449468 28449540 -95626632 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 6 802 29 0 0 0 chr9 28450226 28450255 -95625917 + AT_rich Low_complexity Low_complexity 1 29 0 6 802 1336 89 10 5 chr9 28451001 28451193 -95624979 + B2_Mm1t SINE B2 1 193 0 6 802 491 321 12 42 chr9 28452474 28452640 -95623532 - RSINE1 SINE B4 -2 163 3 6 802 856 290 39 32 chr9 28453028 28453313 -95622859 - B4A SINE B4 -4 288 2 6 802 304 374 36 30 chr9 28453965 28454133 -95622039 + MER5A DNA MER1_type 17 185 -4 6 802 296 275 133 21 chr9 28461758 28462018 -95614154 - L1ME1 LINE L1 -273 5906 5616 6 802 238 286 130 20 chr9 28462028 28462128 -95614044 - ORR1E LTR MaLR -5 354 244 6 802 1368 281 55 11 chr9 28462255 28462805 -95613367 - L1MC1 LINE L1 -195 6138 5565 6 802 889 274 100 53 chr9 28462815 28463154 -95613018 - Tigger7 DNA MER2_type -1 2490 2136 6 802 324 273 14 102 chr9 28463142 28463289 -95612883 - Tigger7 DNA MER2_type -2186 305 172 6 802 1168 280 66 33 chr9 28463299 28463998 -95612174 - L1MC1 LINE L1 -1355 4791 4070 6 802 601 129 17 0 chr9 28464000 28464116 -95612056 + (TC)n Simple_repeat Simple_repeat 1 118 0 6 802 433 276 84 56 chr9 28464177 28464482 -95611690 - L1ME1 LINE L1 -682 5502 5192 6 802 561 323 21 45 chr9 28464649 28464967 -95611205 - L1ME1 LINE L1 -994 5152 4838 6 802 453 282 52 83 chr9 28464967 28465160 -95611012 + B3A SINE B2 1 187 -11 6 802 561 303 99 39 chr9 28465160 28465819 -95610353 - L1ME1 LINE L1 -1309 4837 4104 6 802 206 109 91 0 chr9 28465988 28466043 -95610129 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 802 21 36 0 0 chr9 28466468 28466496 -95609676 + AT_rich Low_complexity Low_complexity 1 28 0 6 802 281 68 0 22 chr9 28466636 28466681 -95609491 + (CAAAC)n Simple_repeat Simple_repeat 1 44 0 6 802 1665 250 45 13 chr9 28467753 28468150 -95608022 - MTD LTR MaLR -7 412 3 6 802 201 158 0 50 chr9 28468487 28468527 -95607645 + (ATG)n Simple_repeat Simple_repeat 2 39 0 6 802 242 81 47 31 chr9 28468732 28468796 -95607376 + A-rich Low_complexity Low_complexity 3 67 0 6 802 2737 48 0 49 chr9 28469018 28469387 -95606785 - L1Md_F2 LINE L1 -12 6570 6220 6 802 225 237 34 0 chr9 28470010 28470069 -95606103 + CT-rich Low_complexity Low_complexity 5 65 0 6 802 25 0 0 0 chr9 28471572 28471597 -95604575 + AT_rich Low_complexity Low_complexity 1 25 0 6 802 333 292 85 0 chr9 28473021 28473127 -95603045 - PB1D7 SINE Alu -5 115 1 6 802 1188 244 97 45 chr9 28473410 28473791 -95602381 + MTD LTR MaLR 5 405 -14 6 802 256 373 100 23 chr9 28474185 28474495 -95601677 + L2 LINE L2 1194 1527 -1892 6 802 606 140 0 0 chr9 28475028 28475142 -95601030 + (CA)n Simple_repeat Simple_repeat 1 114 0 6 802 239 263 0 0 chr9 28475161 28475218 -95600954 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 6 802 196 410 25 25 chr9 28476744 28476864 -95599308 - L2b LINE L2 -13 3362 3243 6 802 944 181 136 0 chr9 28476871 28477070 -95599102 + URR1A DNA MER1_type 1 226 0 6 802 192 353 86 43 chr9 28477559 28477769 -95598403 + L2b LINE L2 3151 3369 -6 6 802 239 299 53 72 chr9 28479211 28479413 -95596759 + MIR SINE MIR 34 226 -36 6 802 1907 289 121 7 chr9 28480455 28481281 -95594891 + Charlie2a DNA MER1_type 1744 2663 -198 6 802 255 216 53 26 chr9 28481296 28481448 -95594724 + RMER17A LTR ERVK 313 468 -283 6 802 304 227 39 8 chr9 28482577 28482706 -95593466 + CT-rich Low_complexity Low_complexity 4 136 0 6 802 229 343 47 40 chr9 28486516 28486665 -95589507 - MIRc SINE MIR -64 204 55 6 802 795 276 139 8 chr9 28487938 28488183 -95587989 + B4A SINE B4 10 286 -6 6 802 313 277 112 59 chr9 28488419 28488588 -95587584 - MIRb SINE MIR -13 255 78 6 802 309 279 87 35 chr9 28488663 28488778 -95587394 - MIRc SINE MIR -35 233 113 6 802 513 221 119 88 chr9 28489444 28489603 -95586569 + RSINE1 SINE B4 2 165 0 6 802 291 122 0 0 chr9 28490182 28490231 -95585941 + (TATG)n Simple_repeat Simple_repeat 4 52 0 6 802 767 45 53 0 chr9 28490236 28490369 -95585803 + (TCTA)n Simple_repeat Simple_repeat 3 142 0 6 802 306 50 0 0 chr9 28490396 28490436 -95585736 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 802 437 298 57 0 chr9 28490442 28490583 -95585589 - RSINE1 SINE B4 -16 149 1 6 802 1038 270 79 39 chr9 28490726 28491081 -95585091 - MTEa LTR MaLR -9 370 2 6 802 585 230 17 17 chr9 28493413 28493594 -95582578 - L1MA5 LINE L1 -2 6298 6118 6 802 232 376 11 0 chr9 28493866 28493959 -95582213 + MER3 DNA MER1_type 29 122 -87 6 802 1013 289 12 104 chr9 28495952 28496366 -95579806 + MTE2b LTR MaLR 1 376 -3 6 802 1347 239 58 2 chr9 28499015 28499413 -95576759 - L1MA6 LINE L1 -5 6295 5876 6 802 378 0 0 0 chr9 28500631 28500673 -95575499 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 802 22 0 0 0 chr9 28501290 28501312 -95574860 + AT_rich Low_complexity Low_complexity 1 22 0 2 802 705 98 14 27 chr9 28501370 28501517 -95574655 + (TA)n Simple_repeat Simple_repeat 1 145 0 3 802 537 265 99 25 chr9 28501519 28501720 -95574452 + B3 SINE B2 1 216 0 4 802 1627 252 47 63 chr9 28501878 28502373 -95573799 + MT2A LTR ERVL 3 489 -44 5 802 491 215 8 0 chr9 28502373 28502494 -95573678 + (TA)n Simple_repeat Simple_repeat 2 123 0 6 802 528 304 38 86 chr9 28502756 28502965 -95573207 - MLT1A LTR MaLR -2 372 174 7 802 621 105 0 0 chr9 28502965 28503060 -95573112 + (GA)n Simple_repeat Simple_repeat 2 96 0 8 802 256 295 129 23 chr9 28503066 28503198 -95572974 - MLT1A LTR MaLR -244 146 1 7 802 357 328 55 73 chr9 28503227 28503447 -95572725 - MLT1J1 LTR MaLR -36 408 193 9 802 441 54 0 0 chr9 28503887 28503943 -95572229 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 802 1129 239 102 68 chr9 28504097 28504451 -95571721 - MTD LTR MaLR 0 419 54 1 802 396 0 0 0 chr9 28504459 28504503 -95571669 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 802 1080 92 0 7 chr9 28504534 28504677 -95571495 - B1_Mus1 SINE Alu -2 146 5 1 802 247 286 69 85 chr9 28506076 28506206 -95569966 + ID_B1 SINE B4 96 223 -1 1 802 272 249 3 25 chr9 28506216 28506324 -95569848 + ID2 SINE ID 16 122 -30 1 802 367 410 43 4 chr9 28506722 28506952 -95569220 - LTR16D LTR ERVL -389 262 24 1 802 446 304 115 56 chr9 28507093 28507308 -95568864 + L1ME3 LINE L1 5504 5716 -446 1 802 216 0 0 0 chr9 28507308 28507332 -95568840 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 802 446 304 115 56 chr9 28507332 28507671 -95568501 + L1ME3 LINE L1 5717 6090 -72 1 802 446 275 73 126 chr9 28507688 28507879 -95568293 - B3 SINE B2 -9 186 6 1 802 366 23 0 0 chr9 28507979 28508022 -95568150 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 802 297 0 0 0 chr9 28508159 28508192 -95567980 + (A)n Simple_repeat Simple_repeat 1 33 0 2 802 315 0 0 0 chr9 28509187 28509222 -95566950 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 802 207 170 20 41 chr9 28510143 28510171 -95566001 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 802 512 95 12 0 chr9 28510171 28510255 -95565917 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2 802 207 170 20 41 chr9 28510255 28510275 -95565897 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 802 585 314 30 86 chr9 28510288 28510591 -95565581 - B4A SINE B4 -1 291 6 2 802 248 270 143 0 chr9 28510615 28510678 -95565494 - MER58A DNA MER1_type -141 83 12 2 802 2901 306 71 20 chr9 28510913 28512120 -95564052 - Lx8 LINE L1 -5 7468 6200 2 802 218 227 53 132 chr9 28512398 28512474 -95563698 + L2a LINE L2 3341 3410 -16 2 802 265 305 8 63 chr9 28512827 28512953 -95563219 - PB1D9 SINE Alu -1 119 1 3 802 720 355 77 18 chr9 28516225 28516563 -95559609 + MER74A LTR ERVL 142 499 -59 3 802 21 0 0 0 chr9 28517307 28517328 -95558844 + AT_rich Low_complexity Low_complexity 1 21 0 3 802 2180 314 80 34 chr9 28517483 28519498 -95556674 - Lx8 LINE L1 -213 7260 5144 3 802 180 0 0 0 chr9 28519498 28519518 -95556654 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 802 254 0 83 0 chr9 28519518 28519554 -95556618 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 3 802 1474 294 90 11 chr9 28519554 28519619 -95556553 - Lx8 LINE L1 -737 5143 5074 3 802 369 326 0 0 chr9 28519626 28519764 -95556408 + Lx8 LINE L1 4925 5062 -818 3 802 2465 153 7 42 chr9 28519769 28520227 -95555945 + Lx2B LINE L1 6549 6990 -10 3 802 399 328 180 8 chr9 28520961 28521216 -95554956 + L1ME3 LINE L1 5855 6153 -9 3 802 216 220 17 0 chr9 28521297 28521356 -95554816 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 802 683 333 17 9 chr9 28521974 28522207 -95553965 - MIRc SINE MIR -17 251 17 3 802 249 33 0 0 chr9 28523127 28523157 -95553015 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 802 22 35 0 0 chr9 28523274 28523303 -95552869 + AT_rich Low_complexity Low_complexity 1 29 0 4 802 1161 165 0 5 chr9 28523758 28523977 -95552195 + Lx LINE L1 6436 6653 -1 4 802 4179 84 7 5 chr9 28524283 28524855 -95551317 - L1_Mus4 LINE L1 0 6636 6064 4 802 189 0 0 0 chr9 28525471 28525492 -95550680 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4 802 333 118 0 0 chr9 28525756 28525807 -95550365 + (TTCTCC)n Simple_repeat Simple_repeat 5 55 0 4 802 243 298 64 55 chr9 28526775 28526885 -95549287 - L2c LINE L2 -3 3384 3274 4 802 838 286 0 0 chr9 28528808 28528993 -95547179 - B3 SINE B2 -7 209 25 4 802 21 0 0 0 chr9 28531169 28531190 -95544982 + AT_rich Low_complexity Low_complexity 1 21 0 4 802 2354 92 48 0 chr9 28531384 28531719 -95544453 - Lx3_Mus LINE L1 -8 7001 6651 4 802 240 250 0 0 chr9 28532152 28532216 -95543956 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 802 483 126 0 0 chr9 28534387 28534482 -95541690 + (CATA)n Simple_repeat Simple_repeat 2 96 0 5 802 2404 304 75 25 chr9 28534490 28535678 -95540494 + Lx8 LINE L1 6227 7473 0 5 802 369 23 0 0 chr9 28535699 28535743 -95540429 - L1_Mus1 LINE L1 -306 6261 6218 5 802 2374 84 3 0 chr9 28535743 28536099 -95540073 + L1_Mus1 LINE L1 6246 6567 0 5 802 226 192 19 37 chr9 28536101 28536155 -95540017 + RLTR20C LTR ERVK 386 438 -96 5 802 1161 196 0 59 chr9 28537284 28537523 -95538649 - URR1B DNA MER1_type 0 225 1 5 802 340 329 70 114 chr9 28539108 28539266 -95536906 - RSINE1 SINE B4 0 165 15 5 802 1048 164 124 0 chr9 28541120 28541321 -95534851 - URR1A DNA MER1_type 0 226 1 5 802 232 296 57 44 chr9 28541411 28541570 -95534602 + Lx8 LINE L1 6905 7065 -408 5 802 7069 65 11 1 chr9 28542234 28543779 -95532393 - L1Md_F2 LINE L1 0 6582 5016 5 802 181 341 70 65 chr9 28544240 28544425 -95531747 - L2 LINE L2 -659 2760 2575 6 802 279 0 0 0 chr9 28544532 28544563 -95531609 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 802 354 239 13 6 chr9 28544563 28544719 -95531453 + (TA)n Simple_repeat Simple_repeat 1 157 0 6 802 729 150 0 0 chr9 28544692 28544825 -95531347 + (CA)n Simple_repeat Simple_repeat 2 134 0 6 802 188 0 74 0 chr9 28545064 28545091 -95531081 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 802 457 335 6 92 chr9 28545096 28545270 -95530902 - RSINE1 SINE B4 0 165 7 6 802 679 265 57 24 chr9 28546756 28546965 -95529207 + B3 SINE B2 1 216 0 6 802 4374 102 0 19 chr9 28548222 28548851 -95527321 + L1_Mus4 LINE L1 6004 6620 -16 6 802 6288 126 34 9 chr9 28548851 28549944 -95526228 + Lx LINE L1 5404 6533 -121 6 802 183 42 0 0 chr9 28549944 28549968 -95526204 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 6 802 6288 120 40 10 chr9 28549968 28550092 -95526080 + Lx LINE L1 6534 6651 -3 6 802 267 231 93 119 chr9 28550486 28550604 -95525568 - PB1D10 SINE Alu -1 116 2 7 802 360 94 0 0 chr9 28550792 28550845 -95525327 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 802 316 315 141 97 chr9 28551613 28551954 -95524218 + ORR1E LTR MaLR 4 359 0 7 802 558 64 0 37 chr9 28553663 28553744 -95522428 + B1_Mus2 SINE Alu 1 78 -69 7 802 246 128 0 0 chr9 28553821 28553860 -95522312 + (CAT)n Simple_repeat Simple_repeat 1 39 0 7 802 245 333 83 45 chr9 28554351 28554508 -95521664 - MLT1A0 LTR MaLR -202 163 1 7 802 195 69 0 0 chr9 28555166 28555195 -95520977 + (TCC)n Simple_repeat Simple_repeat 1 29 0 7 802 23 0 0 0 chr9 28555377 28555400 -95520772 + AT_rich Low_complexity Low_complexity 1 23 0 7 802 344 77 19 0 chr9 28555718 28555770 -95520402 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 802 416 322 100 47 chr9 28556227 28556377 -95519795 + RSINE1 SINE B4 3 160 -5 7 802 447 155 0 0 chr9 28556392 28556476 -95519696 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 802 674 287 9 18 chr9 28556575 28556787 -95519385 + B3A SINE B2 8 204 -12 8 802 188 318 111 0 chr9 28558649 28558712 -95517460 + L2a LINE L2 3308 3377 -49 8 802 394 392 36 32 chr9 28558824 28559077 -95517095 + MER47B DNA MER2_type 14 267 -151 8 802 852 332 51 51 chr9 28561343 28561816 -95514356 + MER44B DNA MER2_type 45 517 -33 8 802 6927 90 3 0 chr9 28561816 28562868 -95513304 + L1_Mus1 LINE L1 5513 6567 0 8 802 400 307 11 0 chr9 28563026 28563114 -95513058 + B4A SINE B4 38 126 -166 8 802 367 371 126 37 chr9 28563511 28563757 -95512415 + MER21B LTR ERV1 65 332 -531 8 802 479 306 75 25 chr9 28564438 28564639 -95511533 - HERV16-int LTR ERVL -2404 2592 2382 8 802 774 228 7 0 chr9 28565257 28565402 -95510770 - B1_Mur1 SINE Alu -3 146 1 8 802 1110 207 14 0 chr9 28565456 28565678 -95510494 + URR1B DNA MER1_type 1 225 0 9 802 26 0 0 0 chr9 28566001 28566027 -95510145 + AT_rich Low_complexity Low_complexity 1 26 0 9 802 374 374 36 6 chr9 28566245 28566412 -95509760 - HAL1b LINE L1 -449 1560 1389 9 802 1174 82 0 0 chr9 28566700 28566846 -95509326 + B1_Mus1 SINE Alu 2 147 -1 9 802 205 135 54 0 chr9 28566850 28566887 -95509285 + A-rich Low_complexity Low_complexity 2 40 0 9 802 349 349 42 39 chr9 28566889 28567175 -95508997 - HAL1b LINE L1 -933 1076 790 9 802 323 232 23 47 chr9 28567348 28567434 -95508738 - PB1D10 SINE Alu -1 116 33 9 802 204 135 0 0 chr9 28570529 28570566 -95505606 + (TTG)n Simple_repeat Simple_repeat 2 38 0 9 802 235 83 0 91 chr9 28570674 28570740 -95505432 + T-rich Low_complexity Low_complexity 1 60 0 9 802 496 333 47 21 chr9 28571136 28571326 -95504846 - B3A SINE B2 0 198 4 9 802 719 219 420 23 chr9 28572427 28572689 -95503483 - ORR1D1 LTR MaLR -8 366 1 9 802 283 293 77 65 chr9 28572701 28573011 -95503161 + L1M3de LINE L1 1590 1903 -4750 1 802 332 341 46 62 chr9 28573081 28573275 -95502897 + L1M4c LINE L1 1290 1480 -4904 1 802 387 0 0 0 chr9 28573335 28573378 -95502794 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 803 244 238 79 39 chr9 28574069 28574196 -95501976 + L1M4c LINE L1 2499 2630 -3746 1 803 892 242 6 20 chr9 28574265 28574491 -95501681 + B3A SINE B2 2 216 0 1 803 276 412 0 26 chr9 28574535 28574558 -95501614 + ID SINE ID 63 82 -142 1 803 457 281 31 0 chr9 28574558 28574654 -95501518 + PB1D7 SINE Alu 2 100 -20 1 803 420 298 117 34 chr9 28574863 28574985 -95501187 - MER58A DNA MER1_type 0 224 99 1 803 351 0 0 0 chr9 28574985 28575024 -95501148 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 1 803 420 298 117 34 chr9 28575024 28575106 -95501066 - MER58A DNA MER1_type -126 98 4 1 803 566 253 73 18 chr9 28576065 28576162 -95500010 - RLTR20C LTR ERVK 0 551 458 1 803 420 20 0 0 chr9 28576162 28576211 -95499961 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 803 826 215 98 105 chr9 28576211 28576577 -95499595 - RLTR20C LTR ERVK -94 457 3 1 803 399 291 46 97 chr9 28576939 28577114 -95499058 - MLT1B LTR MaLR -213 177 12 1 803 271 0 51 0 chr9 28578430 28578469 -95497703 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 803 522 0 0 0 chr9 28578501 28578559 -95497613 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 803 304 241 197 49 chr9 28578834 28578892 -95497280 - B4 SINE B4 -141 151 84 1 803 225 0 0 0 chr9 28578892 28578917 -95497255 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 803 304 241 197 49 chr9 28578917 28578980 -95497192 - B4 SINE B4 -209 83 12 1 803 1123 188 0 10 chr9 28579204 28579403 -95496769 - MTC LTR MaLR -1 420 224 1 803 330 191 31 31 chr9 28579385 28579450 -95496722 - B1_Mur3 SINE Alu -39 110 46 1 803 2350 168 16 22 chr9 28579443 28579889 -95496283 - MTC-int LTR MaLR -796 462 20 1 803 4018 64 79 0 chr9 28580719 28581238 -95494934 - LTRIS2 LTR ERV1 0 564 5 1 803 257 333 30 10 chr9 28581342 28581442 -95494730 - PB1D10 SINE Alu -11 106 5 1 803 315 0 0 0 chr9 28582830 28582865 -95493307 + (A)n Simple_repeat Simple_repeat 1 35 0 1 803 224 50 0 70 chr9 28583050 28583093 -95493079 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 803 349 230 52 17 chr9 28583154 28583269 -95492903 - Lx8 LINE L1 -2 7471 7353 1 803 580 248 16 0 chr9 28583640 28583761 -95492411 + ID_B1 SINE B4 86 208 -16 1 803 314 143 0 16 chr9 28583837 28583901 -95492271 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1 803 188 34 0 33 chr9 28584084 28584114 -95492058 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 803 294 279 9 55 chr9 28586998 28587108 -95489064 + CT-rich Low_complexity Low_complexity 2 106 0 1 803 230 0 33 0 chr9 28587273 28587303 -95488869 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 803 1061 90 14 0 chr9 28587310 28587455 -95488717 - B1_Mus2 SINE Alu 0 147 1 1 803 21 0 0 0 chr9 28588754 28588775 -95487397 + AT_rich Low_complexity Low_complexity 1 21 0 1 803 486 33 0 0 chr9 28588851 28588911 -95487261 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 803 2238 314 49 68 chr9 28588947 28589206 -95486966 - L1M2 LINE L1 -16 5864 5606 1 803 1847 112 48 63 chr9 28589206 28589538 -95486634 + ORR1A4 LTR MaLR 3 329 0 1 803 2238 314 49 68 chr9 28589538 28589652 -95486520 - L1M2 LINE L1 -275 5605 5544 1 803 1221 34 7 0 chr9 28589652 28589798 -95486374 - B1_Mus1 SINE Alu 0 148 2 1 803 2439 305 50 31 chr9 28589798 28591386 -95484786 - L1M2 LINE L1 -337 5543 3938 1 803 1103 94 0 5 chr9 28591935 28592149 -95484023 + (TC)n Simple_repeat Simple_repeat 1 212 0 1 803 856 319 83 25 chr9 28592226 28593121 -95483051 - L1M2 LINE L1 -2167 3976 3017 1 803 1348 12 0 18 chr9 28593121 28593289 -95482883 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 1 803 856 293 13 45 chr9 28593289 28593451 -95482721 - L1M2 LINE L1 -3127 3016 2860 1 803 186 43 0 0 chr9 28593986 28594009 -95482163 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 1 803 285 29 0 0 chr9 28594226 28594260 -95481912 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 803 2200 303 138 32 chr9 28594480 28595804 -95480368 - Lx9 LINE L1 -468 7176 5712 1 803 328 274 45 45 chr9 28595922 28596033 -95480139 + B4A SINE B4 1 111 -181 1 803 301 280 0 74 chr9 28596247 28596355 -95479817 - MLT1A1 LTR MaLR 0 408 309 1 803 539 265 79 21 chr9 28597498 28597687 -95478485 - Tigger15a DNA TcMar 0 715 516 1 803 282 343 79 11 chr9 28598788 28598965 -95477207 + MER5A DNA MER1_type 1 189 0 1 803 1442 296 11 3 chr9 28602195 28602571 -95473601 - MTE2b LTR MaLR 0 379 1 1 803 255 261 39 18 chr9 28603575 28603686 -95472486 + ID4 SINE ID 3 115 -37 1 803 352 151 0 36 chr9 28604702 28604812 -95471360 + (TCTCTG)n Simple_repeat Simple_repeat 4 109 0 1 803 636 296 93 44 chr9 28605575 28605780 -95470392 - B3A SINE B2 0 216 2 1 803 429 268 0 0 chr9 28605799 28605926 -95470246 + GA-rich Low_complexity Low_complexity 2 128 0 1 803 270 0 0 0 chr9 28607101 28607131 -95469041 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1 803 393 220 237 0 chr9 28608827 28608945 -95467227 + B3 SINE B2 1 146 -70 1 803 2837 147 69 0 chr9 28608945 28609422 -95466750 + RLTR28 LTR ERVL 1 510 -14 1 803 481 264 27 0 chr9 28609674 28609822 -95466350 - L1MB7 LINE L1 -58 6126 5975 1 803 321 293 211 16 chr9 28609850 28610290 -95465882 - L1MB7 LINE L1 -315 5865 5345 1 803 310 344 69 11 chr9 28610285 28610635 -95465537 - L1MB7 LINE L1 -998 5148 4779 1 803 365 207 0 17 chr9 28610783 28610851 -95465321 + polypyrimidine Low_complexity Low_complexity 50 116 0 1 803 1062 100 0 0 chr9 28610851 28611031 -95465141 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 803 365 207 0 17 chr9 28611031 28611080 -95465092 + polypyrimidine Low_complexity Low_complexity 1 49 0 1 803 595 225 8 8 chr9 28611112 28611233 -95464939 - B1F SINE Alu -8 141 21 1 803 249 324 32 75 chr9 28611113 28611300 -95464872 + YREP_Mm Unknown Unknown 182 360 -1452 1 803 253 260 38 25 chr9 28611857 28611936 -95464236 - MIRb SINE MIR -66 202 123 1 803 24 0 0 0 chr9 28613265 28613289 -95462883 + AT_rich Low_complexity Low_complexity 1 24 0 1 803 181 381 68 6 chr9 28613438 28613599 -95462573 - MIRb SINE MIR -5 263 93 1 803 522 282 36 30 chr9 28615121 28615289 -95460883 - RMER30 DNA MER1_type -24 178 10 1 803 341 352 123 6 chr9 28615353 28615516 -95460656 - ORR1E LTR MaLR -176 183 2 1 803 233 269 0 0 chr9 28618307 28618359 -95457813 - MIR SINE MIR -1 261 210 1 803 341 369 69 5 chr9 28618598 28618786 -95457386 + Tigger5 DNA MER2_type 77 276 -2130 1 803 304 318 9 18 chr9 28618756 28618865 -95457307 + Tigger5 DNA MER2_type 2291 2398 -8 1 803 2562 308 98 26 chr9 28619030 28620343 -95455829 + Lx8 LINE L1 6060 7467 -6 1 803 744 333 26 41 chr9 28621896 28622284 -95453888 - MLT1C LTR MaLR -6 461 80 1 803 192 77 0 0 chr9 28623127 28623153 -95453019 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 803 22 0 0 0 chr9 28624038 28624060 -95452112 + AT_rich Low_complexity Low_complexity 1 22 0 1 803 279 0 0 0 chr9 28624670 28624701 -95451471 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 803 1133 64 0 0 chr9 28624702 28624843 -95451329 - B1_Mus1 SINE Alu -6 142 2 1 803 265 261 232 9 chr9 28625481 28625593 -95450579 - Tigger15a DNA TcMar -2 713 577 1 803 1926 142 40 78 chr9 28626482 28626908 -95449264 - RMER17C LTR ERVK 0 410 1 1 803 450 0 0 0 chr9 28626946 28626996 -95449176 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 803 380 212 42 59 chr9 28628050 28628194 -95447978 + L1ME1 LINE L1 5683 5822 -418 1 803 208 211 0 0 chr9 28628194 28628232 -95447940 + GA-rich Low_complexity Low_complexity 2 39 0 1 803 387 105 0 0 chr9 28628233 28628290 -95447882 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 1 803 1244 89 0 6 chr9 28628290 28628471 -95447701 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 803 244 333 10 0 chr9 28628550 28628652 -95447520 + L1ME1 LINE L1 5902 6004 -175 1 803 183 366 99 40 chr9 28629001 28629223 -95446949 - MIRc SINE MIR -21 247 13 1 803 195 170 0 0 chr9 28632136 28632183 -95443989 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 803 1177 214 151 0 chr9 28632737 28633061 -95443111 - ORR1C2 LTR MaLR -1 383 11 1 803 405 0 0 0 chr9 28634287 28634332 -95441840 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 803 264 30 0 0 chr9 28634332 28634364 -95441808 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 803 698 43 21 0 chr9 28635274 28635367 -95440805 + (TATG)n Simple_repeat Simple_repeat 2 96 0 1 803 360 0 0 0 chr9 28635367 28635406 -95440766 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1 803 22 0 0 0 chr9 28636025 28636047 -95440125 + AT_rich Low_complexity Low_complexity 1 22 0 1 803 1199 58 0 94 chr9 28636155 28636346 -95439826 - L1_Mus2 LINE L1 -6 6560 6388 1 803 494 252 9 37 chr9 28636644 28636751 -95439421 + PB1D10 SINE Alu 7 110 -7 1 803 22 56 0 0 chr9 28637014 28637050 -95439122 + AT_rich Low_complexity Low_complexity 1 36 0 1 803 443 266 132 61 chr9 28637174 28637522 -95438650 - L1MD LINE L1 -716 5728 5358 1 803 1579 166 10 56 chr9 28637522 28637828 -95438344 - Lx3C LINE L1 -8 6968 6677 1 803 443 248 105 105 chr9 28637828 28637939 -95438233 - L1MD LINE L1 -789 5357 5237 1 803 750 23 0 0 chr9 28637939 28638027 -95438145 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 1 803 239 248 105 105 chr9 28638027 28638095 -95438077 - L1MD LINE L1 -910 5236 5168 1 803 1420 85 5 0 chr9 28638095 28638284 -95437888 - B2_Mm1t SINE B2 -3 190 1 1 803 239 304 112 65 chr9 28638284 28638694 -95437478 - L1MD LINE L1 -977 5169 4731 1 803 401 324 57 11 chr9 28638753 28638928 -95437244 - L1MC LINE L1 -1497 4649 4467 1 803 245 279 20 0 chr9 28638984 28639091 -95437081 - L1MD LINE L1 -1779 4367 4256 1 803 306 156 0 0 chr9 28639358 28639422 -95436750 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 803 22 0 0 0 chr9 28639544 28639566 -95436606 + AT_rich Low_complexity Low_complexity 1 22 0 1 803 244 293 0 75 chr9 28639579 28639712 -95436460 + L1M3 LINE L1 3628 3750 -2390 1 803 247 299 0 0 chr9 28639716 28639793 -95436379 - MusHAL1 LINE L1 -342 2370 2294 1 803 234 235 35 69 chr9 28639781 28639868 -95436304 + L1_Mur3 LINE L1 4516 4599 -1281 1 803 504 48 0 0 chr9 28640048 28640111 -95436061 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 1 803 1196 82 0 6 chr9 28640111 28640281 -95435891 + (GAAA)n Simple_repeat Simple_repeat 1 170 0 1 803 831 211 38 38 chr9 28640456 28640668 -95435504 - ORR1D1 LTR MaLR -122 252 41 2 803 1356 209 31 110 chr9 28640842 28641325 -95434847 - Lx7 LINE L1 -2 7694 7250 2 803 4484 85 57 19 chr9 28641328 28642124 -95434048 - Lx3_Mus LINE L1 -687 6322 5500 2 803 4938 92 12 1 chr9 28642124 28642801 -95433371 + Lx3_Mus LINE L1 6318 7001 -8 2 803 25 51 0 0 chr9 28642814 28642853 -95433319 + AT_rich Low_complexity Low_complexity 1 39 0 2 803 10859 193 216 59 chr9 28642870 28645071 -95431101 - Lx7 LINE L1 -473 7223 4817 2 803 888 51 43 31 chr9 28645071 28645234 -95430938 + (CAAAA)n Simple_repeat Simple_repeat 4 168 0 2 803 10859 181 233 37 chr9 28645234 28648703 -95427469 - Lx7 LINE L1 -1064 4816 518 2 803 197 108 0 26 chr9 28648900 28648938 -95427234 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 2 803 407 196 21 0 chr9 28649471 28649568 -95426604 + T-rich Low_complexity Low_complexity 3 101 0 2 803 351 0 0 0 chr9 28650501 28650540 -95425632 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 803 778 209 173 0 chr9 28650617 28650808 -95425364 + URR1B DNA MER1_type 2 225 0 2 803 4700 67 2 32 chr9 28651213 28651846 -95424326 + L1_Mus2 LINE L1 5953 6566 0 2 803 423 56 0 0 chr9 28651849 28651903 -95424269 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 2 803 328 375 52 60 chr9 28652201 28652453 -95423719 + MLT1F LTR MaLR 3 252 -296 2 803 232 312 42 21 chr9 28652581 28652676 -95423496 + MLT1F LTR MaLR 464 560 0 2 803 21 0 0 0 chr9 28652866 28652887 -95423285 + AT_rich Low_complexity Low_complexity 1 21 0 2 803 23 54 0 0 chr9 28652944 28652981 -95423191 + AT_rich Low_complexity Low_complexity 1 37 0 2 803 557 271 42 0 chr9 28653006 28653124 -95423048 + B1_Mur3 SINE Alu 2 124 -25 2 803 567 96 0 0 chr9 28653125 28653208 -95422964 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 803 495 0 0 0 chr9 28653231 28653286 -95422886 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 803 804 134 7 27 chr9 28653289 28653435 -95422737 - URR1B DNA MER1_type 0 225 83 2 803 417 70 0 0 chr9 28653491 28653548 -95422624 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 803 324 278 101 20 chr9 28653554 28653653 -95422519 + B4A SINE B4 5 111 -181 2 803 1158 35 21 7 chr9 28654298 28654443 -95421729 + B1_Mus2 SINE Alu 1 147 0 2 803 1569 295 49 13 chr9 28655116 28655748 -95420424 - Lx7 LINE L1 0 7473 6799 2 803 5433 170 78 6 chr9 28655748 28656777 -95419395 - RLTR25A LTR ERVK 0 1103 1 2 803 780 304 142 14 chr9 28656782 28657368 -95418804 + Lx7 LINE L1 5742 6402 -1294 2 803 1756 182 67 44 chr9 28657512 28657944 -95418228 - RMER10A LTR ERVL 0 442 1 2 803 643 296 65 38 chr9 28657963 28658226 -95417946 + Lx7 LINE L1 6535 6804 -892 2 803 183 114 0 0 chr9 28658410 28658445 -95417727 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 803 235 337 64 48 chr9 28659200 28659387 -95416785 - MIR SINE MIR -55 207 18 2 803 305 327 74 35 chr9 28660978 28661181 -95414991 + L2 LINE L2 2870 3080 -339 2 803 283 235 12 0 chr9 28661209 28661290 -95414882 + Lx7 LINE L1 7615 7696 0 2 803 2076 102 36 62 chr9 28665344 28665680 -95410492 - ORR1A2 LTR MaLR 0 327 1 2 803 331 351 129 41 chr9 28665828 28666146 -95410026 + L2a LINE L2 2305 2650 -769 2 803 299 273 70 59 chr9 28666606 28666793 -95409379 + L2a LINE L2 3237 3425 -1 2 803 227 365 112 0 chr9 28666922 28667092 -95409080 - L2a LINE L2 -265 3161 2973 2 803 349 338 84 46 chr9 28667167 28667452 -95408720 - L2a LINE L2 -579 2840 2545 2 803 261 291 93 78 chr9 28667559 28667764 -95408408 + MTEb LTR MaLR 152 366 -13 2 803 232 307 77 29 chr9 28668861 28668965 -95407207 + L2b LINE L2 3260 3368 -7 2 803 306 276 47 27 chr9 28669696 28669845 -95406327 + MER103 DNA DNA 13 164 -2 2 803 336 311 111 37 chr9 28670451 28671036 -95405136 + L1ME3 LINE L1 5491 6109 -55 2 803 390 21 0 0 chr9 28671546 28671593 -95404579 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 803 243 301 55 55 chr9 28671603 28671633 -95404539 - B2_Mm2 SINE B2 -86 109 1 2 803 387 266 0 0 chr9 28671633 28671712 -95404460 - RSINE1 SINE B4 -85 80 2 2 803 23 33 0 0 chr9 28671877 28671907 -95404265 + AT_rich Low_complexity Low_complexity 1 30 0 2 803 186 133 0 0 chr9 28671939 28671969 -95404203 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 803 262 308 11 21 chr9 28673206 28673299 -95402873 - MIR3 SINE MIR -35 173 82 2 803 304 282 54 113 chr9 28673402 28673570 -95402602 + MTE2a LTR MaLR 1 158 -221 2 803 321 281 65 16 chr9 28673576 28673699 -95402473 - MLT1B LTR MaLR -239 151 23 2 803 362 337 0 0 chr9 28675947 28676048 -95400124 + MLT1F LTR MaLR 1 101 -447 2 803 439 241 109 7 chr9 28676123 28676261 -95399911 + MLT1F LTR MaLR 282 433 -115 2 803 650 233 30 15 chr9 28676639 28676770 -95399402 + B1_Mur3 SINE Alu 1 133 -16 2 803 409 356 68 43 chr9 28676826 28677152 -95399020 + Kanga2_a DNA Tc2 135 468 -420 2 803 226 361 52 90 chr9 28677621 28677755 -95398417 - MER115 DNA Tip100 -164 529 401 2 803 390 303 146 39 chr9 28679264 28679594 -95396578 + L1M5 LINE L1 4981 5345 -801 2 803 232 276 0 17 chr9 28680044 28680103 -95396069 + PB1D10 SINE Alu 28 85 -32 2 803 240 297 15 45 chr9 28680147 28680214 -95395958 + ID4_ SINE ID 9 73 -10 2 803 720 291 88 29 chr9 28680286 28680559 -95395613 + B4A SINE B4 4 292 0 2 803 1256 308 94 47 chr9 28680837 28681610 -95394562 + Lx8 LINE L1 6663 7472 -1 2 803 225 0 0 0 chr9 28681776 28681801 -95394371 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2 803 273 277 106 110 chr9 28681805 28682032 -95394140 - L2a LINE L2 -9 3417 3192 2 803 1442 210 91 28 chr9 28682062 28682415 -95393757 + MTD LTR MaLR 37 411 -8 2 803 1279 287 102 57 chr9 28683726 28684254 -95391918 - MER21B LTR ERV1 -185 678 127 2 803 820 307 25 25 chr9 28684572 28684886 -95391286 - Tigger15a DNA TcMar -121 594 281 2 803 1865 80 8 4 chr9 28684935 28685186 -95390986 - L1_Mus1 LINE L1 -468 6099 5848 2 803 1475 62 0 0 chr9 28685186 28685364 -95390808 + L1_Mus1 LINE L1 6390 6567 0 2 803 506 279 41 31 chr9 28685733 28685929 -95390243 + Charlie1a DNA MER1_type 394 591 -864 2 803 197 65 0 31 chr9 28685929 28685961 -95390211 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 2 803 471 308 60 74 chr9 28686151 28686368 -95389804 - B4A SINE B4 -2 290 77 2 803 459 216 38 29 chr9 28686505 28686610 -95389562 + PB1D7 SINE Alu 15 120 0 2 803 333 0 0 0 chr9 28687320 28687357 -95388815 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 803 477 276 63 7 chr9 28687364 28687506 -95388666 + RSINE1 SINE B4 9 158 -7 2 803 546 362 17 0 chr9 28687527 28687704 -95388468 - MLT2B1 LTR ERVL -74 493 314 2 803 339 293 114 16 chr9 28687804 28687988 -95388184 + Charlie1a DNA MER1_type 868 1069 -386 2 803 723 71 0 0 chr9 28687993 28688091 -95388081 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 2 803 204 40 0 0 chr9 28688091 28688115 -95388057 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 803 314 294 77 19 chr9 28688189 28688293 -95387879 - PB1D7 SINE Alu -10 110 1 2 803 234 296 207 53 chr9 28688385 28688584 -95387588 + L2a LINE L2 3052 3280 -146 2 803 712 242 96 5 chr9 28688584 28688771 -95387401 - B3 SINE B2 -12 204 1 2 803 234 296 207 53 chr9 28688771 28688871 -95387301 + L2a LINE L2 3281 3397 -29 2 803 191 338 39 0 chr9 28689215 28689292 -95386880 + L2a LINE L2 3347 3426 0 2 803 321 68 0 0 chr9 28689314 28689358 -95386814 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 803 432 0 0 0 chr9 28689358 28689405 -95386767 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 803 355 309 137 7 chr9 28689590 28689743 -95386429 - ORR1E LTR MaLR -167 192 20 2 803 212 411 40 7 chr9 28690564 28690716 -95385456 + L3b LINE CR1 189 345 -137 2 803 287 282 57 0 chr9 28691102 28691192 -95384980 - BC1_Mm scRNA scRNA -56 96 2 2 803 480 111 0 0 chr9 28691214 28691286 -95384886 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 803 814 318 0 0 chr9 28691288 28691467 -95384705 - B3A SINE B2 -18 180 2 2 803 1391 281 48 17 chr9 28692823 28693181 -95382991 - ORR1D2 LTR MaLR -1 369 1 2 803 252 246 0 0 chr9 28694162 28694219 -95381953 + CT-rich Low_complexity Low_complexity 2 58 0 2 803 422 341 35 116 chr9 28694268 28694500 -95381672 - MER20 DNA MER1_type -6 213 1 2 803 285 348 86 12 chr9 28694861 28695024 -95381148 - LTR33 LTR ERVL -315 200 26 2 803 681 13 0 0 chr9 28695307 28695385 -95380787 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 803 600 14 0 0 chr9 28696734 28696803 -95379369 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 803 281 426 7 7 chr9 28698838 28698987 -95377185 - MIR3 SINE MIR -17 191 43 2 803 502 235 93 22 chr9 28701216 28701355 -95374817 - B1F2 SINE Alu 0 149 1 2 803 262 185 25 0 chr9 28701403 28701484 -95374688 + CT-rich Low_complexity Low_complexity 3 85 0 2 803 734 214 93 55 chr9 28701621 28701858 -95374314 - Lx9 LINE L1 -169 7475 7230 2 803 663 204 0 0 chr9 28701864 28702001 -95374171 + Lx9 LINE L1 7506 7642 -2 2 803 664 207 241 0 chr9 28703538 28703712 -95372460 + B3 SINE B2 1 216 0 2 803 1017 47 0 0 chr9 28704240 28704367 -95371805 + (GA)n Simple_repeat Simple_repeat 2 128 0 2 804 945 0 0 0 chr9 28706265 28706370 -95369802 + (TTCTC)n Simple_repeat Simple_repeat 1 105 0 2 804 1313 67 0 11 chr9 28706371 28706553 -95369619 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 2 804 261 83 0 0 chr9 28706554 28706590 -95369582 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 804 270 244 48 12 chr9 28707183 28707266 -95368906 + MER5A DNA MER1_type 14 99 -90 2 804 207 0 0 0 chr9 28707438 28707461 -95368711 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 804 314 202 191 0 chr9 28708493 28708587 -95367585 - L1MA8 LINE L1 -5 6286 6175 2 804 24 32 0 0 chr9 28708618 28708649 -95367523 + AT_rich Low_complexity Low_complexity 1 31 0 2 804 4721 32 6 0 chr9 28709984 28710510 -95365662 + L1Md_F3 LINE L1 6043 6571 -13 2 804 333 0 0 0 chr9 28710581 28710618 -95365554 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 804 334 310 41 14 chr9 28713141 28713293 -95362879 - MLT1B LTR MaLR -211 163 1 3 804 197 351 17 50 chr9 28713885 28714005 -95362167 - L2a LINE L2 -5 3421 3306 3 804 206 319 96 55 chr9 28714564 28714710 -95361462 - MIR SINE MIR -93 169 18 3 804 2015 156 99 0 chr9 28715574 28715908 -95360264 - ORR1B2 LTR MaLR 0 367 1 3 804 287 181 0 122 chr9 28718103 28718185 -95357987 - L2c LINE L2 0 3387 3316 3 804 236 310 15 114 chr9 28718331 28718462 -95357710 - MIRc SINE MIR -114 154 37 3 804 217 292 16 4 chr9 28718660 28718749 -95357423 + L2b LINE L2 3320 3426 0 3 804 328 0 0 60 chr9 28720367 28720417 -95355755 + (GTTTG)n Simple_repeat Simple_repeat 3 49 0 3 804 204 154 0 25 chr9 28720597 28720637 -95355535 + (TATG)n Simple_repeat Simple_repeat 4 42 0 3 804 1005 55 0 0 chr9 28721523 28721651 -95354521 + (GGA)n Simple_repeat Simple_repeat 3 130 0 3 804 317 214 114 44 chr9 28721661 28721755 -95354417 + PB1D7 SINE Alu 13 109 -40 3 804 2404 160 29 34 chr9 28721760 28722175 -95353997 - MTC LTR MaLR -8 413 1 3 804 187 296 55 27 chr9 28722765 28722838 -95353334 - MIRb SINE MIR -156 112 38 3 804 1409 18 0 6 chr9 28723103 28723272 -95352900 + (TTC)n Simple_repeat Simple_repeat 1 168 0 3 804 202 86 103 0 chr9 28723272 28723330 -95352842 + CT-rich Low_complexity Low_complexity 2 65 0 3 804 343 340 80 30 chr9 28724662 28724862 -95351310 + MIR SINE MIR 24 233 -29 3 804 215 216 18 18 chr9 28725249 28725362 -95350810 + (TA)n Simple_repeat Simple_repeat 2 114 0 3 804 218 302 10 10 chr9 28725525 28725622 -95350550 + GA-rich Low_complexity Low_complexity 3 99 0 3 804 505 288 165 0 chr9 28725628 28725840 -95350332 + MER2 DNA MER2_type 91 337 -8 3 804 189 0 0 0 chr9 28726934 28726955 -95349217 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 3 804 339 130 0 0 chr9 28727935 28727989 -95348183 + (T)n Simple_repeat Simple_repeat 1 54 0 3 804 306 0 0 0 chr9 28728119 28728153 -95348019 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 804 387 0 0 0 chr9 28733139 28733182 -95342990 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 804 441 274 24 36 chr9 28734797 28734930 -95341242 - PB1D7 SINE Alu -24 123 1 3 804 197 294 34 34 chr9 28735263 28735351 -95340821 - L2c LINE L2 -84 3303 3216 3 804 181 340 58 10 chr9 28736715 28736819 -95339353 - L2c LINE L2 -199 3188 3080 3 804 474 311 52 99 chr9 28736929 28737140 -95339032 + RMER30 DNA MER1_type 1 201 -1 3 804 198 189 18 70 chr9 28737479 28737536 -95338636 - L2 LINE L2 -959 2460 2407 3 804 411 21 0 0 chr9 28737930 28737978 -95338194 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 804 233 333 24 55 chr9 28738277 28738404 -95337768 + MIRb SINE MIR 11 133 -135 3 804 312 27 0 0 chr9 28738761 28738798 -95337374 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 804 775 42 0 0 chr9 28738798 28738893 -95337279 - B1_Mus2 SINE Alu -11 136 42 3 804 313 210 52 138 chr9 28738831 28738947 -95337225 - RLTR25A LTR ERVK -521 582 477 3 804 247 215 115 31 chr9 28740796 28740892 -95335280 - MTEa LTR MaLR 0 379 276 3 804 186 283 174 17 chr9 28741325 28741440 -95334732 + L2a LINE L2 3289 3421 -5 3 804 459 125 0 0 chr9 28742245 28742317 -95333855 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 804 259 296 35 0 chr9 28746183 28746290 -95329882 + MIRb SINE MIR 78 191 -77 3 804 1934 173 45 62 chr9 28746592 28746844 -95329328 - RMER6B LTR ERVK 0 461 224 3 804 378 0 0 0 chr9 28746844 28746886 -95329286 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 804 258 32 0 0 chr9 28746886 28746916 -95329256 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 804 1934 173 45 62 chr9 28746916 28747130 -95329042 - RMER6B LTR ERVK -238 223 3 3 804 1690 168 138 9 chr9 28747335 28747660 -95328512 - ORR1B2 LTR MaLR 0 367 1 3 804 455 281 0 7 chr9 28747861 28748001 -95328171 + L1MA6 LINE L1 5854 5992 -308 3 804 262 271 88 25 chr9 28748058 28748217 -95327955 + L1MA6 LINE L1 6125 6293 -7 3 804 197 152 14 57 chr9 28748217 28748287 -95327885 + GA-rich Low_complexity Low_complexity 2 68 0 3 804 562 298 35 21 chr9 28748568 28748712 -95327460 + RSINE1 SINE B4 3 148 -17 3 804 223 149 0 41 chr9 28749590 28749639 -95326533 + A-rich Low_complexity Low_complexity 5 51 0 3 804 502 309 123 85 chr9 28749691 28750066 -95326106 - MLT1A1 LTR MaLR 0 408 20 3 804 444 302 45 30 chr9 28750162 28750360 -95325812 + MLT1D LTR MaLR 305 505 0 3 804 494 324 49 35 chr9 28750722 28751010 -95325162 + B4A SINE B4 1 292 0 3 804 23 0 0 0 chr9 28751046 28751069 -95325103 + AT_rich Low_complexity Low_complexity 1 23 0 3 804 216 0 0 0 chr9 28751212 28751236 -95324936 + (A)n Simple_repeat Simple_repeat 1 24 0 3 804 243 0 0 0 chr9 28751580 28751607 -95324565 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 3 804 235 351 113 9 chr9 28751662 28751777 -95324395 - L2a LINE L2 -4 3422 3296 3 804 1858 162 53 35 chr9 28752101 28752478 -95323694 - ORR1C2 LTR MaLR 0 384 1 3 804 1095 216 39 96 chr9 28752583 28752947 -95323225 + RMER10B LTR ERVL 53 395 -3 3 804 462 167 0 0 chr9 28753185 28753293 -95322879 + (TG)n Simple_repeat Simple_repeat 2 109 0 3 804 2755 83 42 3 chr9 28754258 28754643 -95321529 - MTB LTR MaLR 0 400 1 3 804 390 246 60 52 chr9 28755432 28755548 -95320624 - B1F1 SINE Alu 0 149 33 3 804 233 77 0 49 chr9 28755550 28755591 -95320581 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 804 237 324 33 55 chr9 28755605 28755879 -95320293 + L1MB4 LINE L1 1189 1456 -5151 3 804 456 143 0 0 chr9 28756002 28756115 -95320057 + (TAGA)n Simple_repeat Simple_repeat 1 113 0 3 804 26 0 0 0 chr9 28756200 28756226 -95319946 + AT_rich Low_complexity Low_complexity 1 26 0 3 804 301 309 0 52 chr9 28756272 28756467 -95319705 + L1MB3 LINE L1 1647 1841 -4637 3 804 397 293 67 16 chr9 28756693 28757005 -95319167 + L1MB3 LINE L1 2077 2404 -3980 3 804 296 291 0 0 chr9 28757643 28757722 -95318450 - Lx6 LINE L1 -191 7269 7191 3 804 605 227 0 8 chr9 28757730 28757850 -95318322 + B1_Mus1 SINE Alu 3 121 -27 3 804 305 347 34 64 chr9 28757929 28758113 -95318059 + L1MB3 LINE L1 2668 2849 -3533 3 804 366 302 50 7 chr9 28758113 28758253 -95317919 + B1F1 SINE Alu 3 148 -1 3 804 305 347 34 64 chr9 28758253 28758302 -95317870 + L1MB3 LINE L1 2850 2894 -3488 3 804 281 227 0 0 chr9 28758388 28758454 -95317718 + L1M3 LINE L1 3466 3531 -2609 3 804 508 268 77 44 chr9 28758462 28758919 -95317253 + L1MB3 LINE L1 2972 3443 -2933 3 804 1727 143 43 78 chr9 28758919 28759290 -95316882 - RLTR9A LTR ERVK -10 358 1 3 804 1311 167 69 4 chr9 28759389 28759635 -95316537 + RLTR28B LTR ERVL 1 262 -219 3 804 2119 82 54 0 chr9 28759637 28759931 -95316241 - MTB_Mm LTR MaLR -8 399 90 3 804 323 296 36 43 chr9 28760206 28760221 -95315951 + RLTR25A LTR ERVK 440 453 -650 3 804 5261 36 3 0 chr9 28760221 28760852 -95315320 + L1Md_F3 LINE L1 5938 6570 -14 3 804 323 296 36 43 chr9 28760852 28760974 -95315198 + RLTR25A LTR ERVK 454 576 -527 3 804 824 39 10 0 chr9 28760913 28761017 -95315155 + B1_Mm SINE Alu 43 147 0 3 804 181 30 29 57 chr9 28761018 28761053 -95315119 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 3 804 517 244 86 40 chr9 28761057 28761232 -95314940 + RLTR41 LTR ERV1 264 446 0 3 804 563 101 28 66 chr9 28761232 28761330 -95314842 - MTB_Mm LTR MaLR -313 94 1 3 804 5397 159 124 11 chr9 28761330 28762460 -95313712 - MTB_Mm-int LTR MaLR 0 1258 1 3 804 2778 95 28 0 chr9 28762466 28762857 -95313315 - MTB_Mm LTR MaLR -5 402 1 3 804 348 242 196 0 chr9 28762857 28762990 -95313182 + RLTR28B LTR ERVL 256 418 -106 3 804 2031 154 28 23 chr9 28762990 28763342 -95312830 - ORR1B1 LTR MaLR 0 394 41 3 804 362 247 47 0 chr9 28763355 28763440 -95312732 + RLTR28B LTR ERVL 436 524 0 3 804 1770 286 58 18 chr9 28763453 28763538 -95312634 + L1MB3 LINE L1 3547 3637 -2745 3 804 180 0 0 0 chr9 28763538 28763558 -95312614 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 804 2056 272 47 9 chr9 28763558 28764363 -95311809 + L1MB3 LINE L1 3638 4473 -1909 3 804 309 26 0 0 chr9 28764392 28764430 -95311742 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 3 804 219 69 0 0 chr9 28764455 28764484 -95311688 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3 804 262 225 47 22 chr9 28764567 28764714 -95311458 + L1MB3 LINE L1 5499 5649 -761 3 804 274 279 12 0 chr9 28764756 28764842 -95311330 + L1MB3 LINE L1 5752 5838 -566 3 804 670 212 212 16 chr9 28764887 28765208 -95310964 + L1MB3 LINE L1 6028 6411 -8 3 804 213 0 53 26 chr9 28766232 28766270 -95309902 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 804 375 20 0 0 chr9 28766377 28766427 -95309745 + L1Md_F2 LINE L1 6521 6570 -12 3 804 428 270 143 29 chr9 28767097 28767341 -95308831 + B4A SINE B4 3 274 -18 3 804 510 315 166 16 chr9 28767600 28768035 -95308137 + L1M5 LINE L1 3411 3910 -2236 3 804 528 16 0 0 chr9 28768354 28768415 -95307757 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 804 347 264 127 0 chr9 28768537 28768647 -95307525 - RMER15 LTR ERVL -69 506 383 3 804 477 0 0 0 chr9 28769141 28769194 -95306978 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 3 804 289 341 90 69 chr9 28769215 28769549 -95306623 + L2a LINE L2 2251 2591 -828 3 804 226 240 0 0 chr9 28769610 28769660 -95306512 + MER34A LTR ERV1 37 86 -485 3 804 1459 182 39 14 chr9 28769669 28769953 -95306219 - MTD LTR MaLR 0 419 129 3 804 182 91 30 0 chr9 28769990 28770023 -95306149 + (TTATG)n Simple_repeat Simple_repeat 4 37 0 3 804 214 336 96 20 chr9 28770081 28770227 -95305945 + L2a LINE L2 3266 3422 -4 3 804 1284 256 47 184 chr9 28771214 28771452 -95304720 + RMER15 LTR ERVL 27 229 -346 3 804 1038 103 7 0 chr9 28771452 28771598 -95304574 + B1_Mm SINE Alu 1 147 0 3 804 1284 256 47 184 chr9 28771598 28771813 -95304359 + RMER15 LTR ERVL 230 403 -172 3 804 2246 72 3 0 chr9 28771813 28772103 -95304069 - L1_Mus1 LINE L1 0 6567 6277 3 804 1284 256 47 184 chr9 28772103 28772284 -95303888 + RMER15 LTR ERVL 404 575 0 3 804 247 318 45 0 chr9 28772553 28772619 -95303553 + 5S rRNA rRNA 1 69 -52 3 804 453 299 71 19 chr9 28773895 28774106 -95302066 + MIRc SINE MIR 15 236 -32 3 804 303 263 89 25 chr9 28774783 28775000 -95301172 - L1MA5 LINE L1 -5 6295 6066 3 804 274 346 143 42 chr9 28775041 28775376 -95300796 - L2 LINE L2 -2584 835 467 3 804 244 306 83 77 chr9 28776889 28777045 -95299127 - MamGypLTR3 LTR Gypsy -34 805 649 3 804 414 267 19 28 chr9 28778735 28778843 -95297329 - RMER15 LTR ERVL -130 445 339 3 804 2981 181 29 5 chr9 28779016 28779570 -95296602 + Lx LINE L1 6085 6651 -3 3 804 2129 292 63 58 chr9 28779585 28780420 -95295752 - RMER15-int LTR ERVL -5 4994 4155 3 804 1482 331 104 38 chr9 28780600 28781806 -95294366 - RMER15-int LTR ERVL -2832 2167 909 3 804 198 0 0 0 chr9 28781806 28781828 -95294344 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 3 804 1359 354 121 55 chr9 28781828 28782122 -95294050 - RMER15-int LTR ERVL -4091 908 618 3 804 408 71 0 0 chr9 28782122 28782178 -95293994 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 804 1359 354 121 55 chr9 28782178 28782682 -95293490 - RMER15-int LTR ERVL -4382 617 31 3 804 266 276 65 82 chr9 28783019 28783189 -95292983 + MLT1D LTR MaLR 150 316 -189 4 804 862 287 152 6 chr9 28783204 28783527 -95292645 + MTEb LTR MaLR 6 375 -4 4 804 322 318 67 28 chr9 28783534 28783712 -95292460 + MLT1D LTR MaLR 319 503 -2 4 804 234 0 0 0 chr9 28783864 28783890 -95292282 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 804 1368 106 0 26 chr9 28785306 28785500 -95290672 - B2_Mm2 SINE B2 -6 189 1 4 804 968 190 16 98 chr9 28786080 28786325 -95289847 + URR1A DNA MER1_type 2 226 0 4 804 442 246 18 0 chr9 28786847 28786957 -95289215 - PB1D10 SINE Alu -1 116 5 4 804 26 30 0 0 chr9 28787157 28787190 -95288982 + AT_rich Low_complexity Low_complexity 1 33 0 4 804 435 266 26 0 chr9 28787273 28787386 -95288786 - Tigger5 DNA MER2_type 0 2406 2291 4 804 241 318 198 57 chr9 28787399 28787556 -95288616 - Tigger5 DNA MER2_type -2181 225 47 4 804 1255 136 104 111 chr9 28791677 28792062 -95284110 + RMER17C LTR ERVK 1 383 -27 4 804 603 40 0 0 chr9 28792062 28792136 -95284036 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 4 804 1108 59 0 0 chr9 28792136 28792272 -95283900 - B1_Mus1 SINE Alu -12 136 1 4 804 1255 136 104 111 chr9 28792272 28792298 -95283874 + RMER17C LTR ERVK 384 409 -1 4 804 265 254 0 29 chr9 28793228 28793297 -95282875 - MER104 DNA Tc2 -72 109 43 4 804 2255 170 46 7 chr9 28793298 28793755 -95282417 - RLTR28 LTR ERVL -10 514 40 4 804 406 308 67 45 chr9 28794691 28794965 -95281207 + L2a LINE L2 3095 3408 -18 4 804 1298 88 4 4 chr9 28796879 28797151 -95279021 + (TC)n Simple_repeat Simple_repeat 1 272 0 4 804 410 312 0 78 chr9 28797206 28797373 -95278799 - B4A SINE B4 -28 264 111 4 804 434 156 44 15 chr9 28798062 28798199 -95277973 + (TCTCTG)n Simple_repeat Simple_repeat 4 144 0 4 804 486 0 0 0 chr9 28798201 28798255 -95277917 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 804 225 230 26 39 chr9 28801194 28801271 -95274901 - L1MC2 LINE L1 -3 6341 6266 4 804 26 0 0 0 chr9 28803337 28803363 -95272809 + AT_rich Low_complexity Low_complexity 1 26 0 4 804 830 76 0 8 chr9 28803494 28803614 -95272558 + (TTCTC)n Simple_repeat Simple_repeat 2 120 0 4 804 243 0 0 0 chr9 28806327 28806354 -95269818 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 804 663 25 0 0 chr9 28806354 28806434 -95269738 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 804 426 120 0 0 chr9 28806435 28806510 -95269662 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 804 278 273 0 0 chr9 28806793 28806870 -95269302 - PB1D10 SINE Alu -1 116 40 4 804 247 298 53 83 chr9 28810276 28810304 -95265868 + MT2B LTR ERVL 130 153 -448 4 804 667 195 0 0 chr9 28810304 28810417 -95265755 + B1_Mur2 SINE Alu 1 113 -36 4 804 219 204 0 0 chr9 28810429 28810478 -95265694 + GA-rich Low_complexity Low_complexity 2 50 0 4 804 417 160 0 26 chr9 28810495 28810572 -95265600 + B3 SINE B2 5 79 -137 4 804 1210 61 0 0 chr9 28812984 28813131 -95263041 + B1_Mm SINE Alu 1 147 0 4 804 279 0 0 0 chr9 28813131 28813162 -95263010 + (A)n Simple_repeat Simple_repeat 1 31 0 4 804 353 390 43 0 chr9 28820131 28820318 -95255854 + L4 LINE RTE 1281 1475 -554 4 804 288 0 0 0 chr9 28822288 28822320 -95253852 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 804 304 316 59 8 chr9 28822697 28822815 -95253357 - ID_B1 SINE B4 -19 205 82 4 804 333 0 0 0 chr9 28823087 28823124 -95253048 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 804 339 113 0 0 chr9 28824930 28824983 -95251189 + (T)n Simple_repeat Simple_repeat 1 53 0 4 804 1162 75 0 0 chr9 28825002 28825148 -95251024 - B1_Mus1 SINE Alu -1 147 2 4 804 675 25 0 0 chr9 28825309 28825390 -95250782 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 4 804 255 79 0 0 chr9 28826019 28826057 -95250115 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 804 537 16 0 0 chr9 28826057 28826118 -95250054 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 804 475 292 144 42 chr9 28826137 28826401 -95249771 - B4A SINE B4 -1 291 1 4 804 271 335 29 18 chr9 28826696 28826866 -95249306 + MLT1C LTR MaLR 245 416 -51 4 804 324 0 0 0 chr9 28829444 28829480 -95246692 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 804 405 0 0 0 chr9 28829487 28829532 -95246640 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 804 182 62 31 0 chr9 28830730 28830762 -95245410 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 804 351 0 0 0 chr9 28831212 28831251 -95244921 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 804 264 59 0 0 chr9 28832095 28832129 -95244043 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 804 629 322 104 16 chr9 28834805 28835121 -95241051 + Lx8 LINE L1 7102 7445 -28 4 804 332 358 54 0 chr9 28835449 28835597 -95240575 - Cheshire DNA MER1_type -2140 280 125 4 100 618 304 29 38 chr9 28835625 28835864 -95240308 - MER2 DNA MER2_type -23 322 86 4 805 253 302 110 17 chr9 28835922 28836040 -95240132 - Cheshire DNA MER1_type -2290 130 2 4 805 207 392 37 22 chr9 28837218 28837622 -95238550 + L2 LINE L2 1994 2403 -1016 4 805 306 278 11 0 chr9 28839669 28839759 -95236413 + L1MEf LINE L1 583 673 -5527 4 805 1724 272 51 15 chr9 28840250 28840783 -95235389 + Lx8 LINE L1 6777 7328 -145 4 805 315 0 0 0 chr9 28840796 28840831 -95235341 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 805 1505 208 75 21 chr9 28840898 28841076 -95235096 + MTD LTR MaLR 13 195 -224 4 805 509 64 13 0 chr9 28841076 28841154 -95235018 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 805 1505 208 75 21 chr9 28841154 28841348 -95234824 + MTD LTR MaLR 196 405 -14 4 805 582 15 0 0 chr9 28841748 28841815 -95234357 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 805 550 253 63 21 chr9 28844605 28844795 -95231377 + MLT1B LTR MaLR 37 234 -156 4 805 356 283 9 54 chr9 28844863 28844975 -95231197 + MLT1B LTR MaLR 343 449 -18 4 805 962 17 9 0 chr9 28845738 28845854 -95230318 + (TC)n Simple_repeat Simple_repeat 2 118 0 4 805 273 293 13 0 chr9 28845854 28845929 -95230243 - ID4 SINE ID -7 76 1 4 805 270 0 0 0 chr9 28846068 28846098 -95230074 + (T)n Simple_repeat Simple_repeat 1 30 0 4 805 180 0 0 0 chr9 28848154 28848174 -95227998 + (T)n Simple_repeat Simple_repeat 1 20 0 4 805 406 237 40 20 chr9 28848232 28848331 -95227841 - B3A SINE B2 -10 188 88 4 805 346 328 75 99 chr9 28849513 28849726 -95226446 + MLT1G3 LTR MaLR 248 455 -140 4 805 838 300 37 0 chr9 28850120 28850363 -95225809 + RCHARR1 DNA MER1_type 10 261 -713 4 805 369 256 97 6 chr9 28850493 28850593 -95225579 + B1_Mus1 SINE Alu 5 107 -13 4 805 231 36 0 0 chr9 28850593 28850621 -95225551 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 805 305 279 55 46 chr9 28850621 28850634 -95225538 + PB1D9 SINE Alu 108 118 -2 4 805 1756 269 150 27 chr9 28850763 28852534 -95223638 + L1MB8 LINE L1 4055 6055 -123 4 805 318 318 0 9 chr9 28853070 28853181 -95222991 + PB1D10 SINE Alu 3 112 -5 4 805 286 264 26 43 chr9 28853183 28853298 -95222874 + PB1D9 SINE Alu 3 115 -5 4 805 473 209 53 15 chr9 28853551 28853682 -95222490 + L1ME1 LINE L1 6043 6178 -1 4 805 841 188 139 5 chr9 28854206 28854393 -95221779 + B3 SINE B2 5 216 0 4 805 367 320 102 12 chr9 28854821 28855077 -95221095 + B4A SINE B4 1 279 -13 4 805 234 0 0 0 chr9 28855077 28855103 -95221069 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 805 225 94 0 0 chr9 28855156 28855188 -95220984 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 805 282 179 0 0 chr9 28856855 28856911 -95219261 + (CAT)n Simple_repeat Simple_repeat 3 58 0 4 805 195 365 48 0 chr9 28857173 28857277 -95218895 - MIRb SINE MIR -146 122 14 4 805 219 241 0 33 chr9 28857495 28857555 -95218617 + CT-rich Low_complexity Low_complexity 3 60 0 4 805 441 76 0 0 chr9 28858237 28858303 -95217869 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 805 412 300 71 60 chr9 28858351 28858822 -95217350 + L1M5 LINE L1 5115 5592 -532 4 805 716 247 20 30 chr9 28859043 28859243 -95216929 - B3 SINE B2 0 216 19 4 805 1015 253 61 23 chr9 28859388 28859784 -95216388 + MLT-int LTR MaLR 1 411 -1324 4 805 452 295 73 107 chr9 28860106 28860395 -95215777 + MLT-int LTR MaLR 1435 1713 -22 4 805 228 292 14 14 chr9 28860583 28860656 -95215516 + MLT1A0 LTR MaLR 236 308 -57 4 805 904 228 5 0 chr9 28860674 28860867 -95215305 + URR1A DNA MER1_type 1 194 -32 4 805 206 341 146 6 chr9 28860874 28861190 -95214982 - L2a LINE L2 -40 3386 3027 4 805 232 294 26 52 chr9 28861340 28861455 -95214717 - L2a LINE L2 -623 2796 2685 4 805 186 238 0 0 chr9 28862905 28862947 -95213225 - MIR SINE MIR -66 142 101 4 805 204 306 20 9 chr9 28863791 28863896 -95212276 + MIRb SINE MIR 36 148 -120 4 805 746 164 0 23 chr9 28865732 28865863 -95210309 - B1_Mur3 SINE Alu 0 149 22 4 805 304 331 51 14 chr9 28868604 28868742 -95207430 + MER20 DNA MER1_type 2 144 -75 4 805 1157 286 42 42 chr9 28869344 28870116 -95206056 - L1M2 LINE L1 -635 5656 4860 4 805 2249 256 30 13 chr9 28870189 28870746 -95205426 + Lx9 LINE L1 6320 6886 -758 4 805 433 316 46 17 chr9 28870787 28870957 -95205215 - MTE2a LTR MaLR 0 379 205 4 805 233 350 0 0 chr9 28870957 28871037 -95205135 + B3A SINE B2 1 80 -118 4 805 453 318 92 23 chr9 28871089 28871263 -95204909 - MTE2a LTR MaLR -163 216 31 4 805 476 270 116 10 chr9 28871539 28871737 -95204435 - L1M2 LINE L1 -1641 4502 4284 4 805 519 261 11 37 chr9 28871749 28871940 -95204232 - L1M2 LINE L1 -2069 4074 3889 4 805 2086 217 58 30 chr9 28871932 28872503 -95203669 + L1MA7 LINE L1 5695 6281 -10 4 805 245 255 0 0 chr9 28873283 28873334 -95202838 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 805 259 348 22 0 chr9 28875638 28875730 -95200442 - MIRc SINE MIR -69 199 106 4 805 260 345 25 49 chr9 28876663 28876785 -95199387 - RSINE1 SINE B4 -2 163 45 4 805 21 71 0 0 chr9 28876870 28876912 -95199260 + AT_rich Low_complexity Low_complexity 1 42 0 4 805 369 333 4 53 chr9 28877113 28877341 -95198831 + L1MEg LINE L1 1027 1243 -4841 4 805 417 39 0 0 chr9 28878026 28878077 -95198095 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 805 407 240 21 10 chr9 28879754 28879851 -95196321 + RSINE1 SINE B4 3 100 -65 5 805 846 25 42 0 chr9 28879936 28880055 -95196117 + (GGAA)n Simple_repeat Simple_repeat 3 126 0 5 805 1053 232 95 23 chr9 28880728 28881077 -95195095 + ORR1D1 LTR MaLR 1 374 0 5 805 218 242 62 52 chr9 28881594 28881690 -95194482 + MIR SINE MIR 84 180 -82 5 805 249 33 0 0 chr9 28886075 28886105 -95190067 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 805 504 0 0 0 chr9 28886105 28886161 -95190011 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 805 26 50 0 0 chr9 28887045 28887085 -95189087 + AT_rich Low_complexity Low_complexity 1 40 0 5 805 321 159 0 0 chr9 28887118 28887181 -95188991 + CT-rich Low_complexity Low_complexity 2 64 0 5 805 707 284 24 9 chr9 28887182 28887392 -95188780 - B3 SINE B2 0 216 4 5 805 186 339 16 89 chr9 28887986 28888109 -95188063 + L2c LINE L2 3273 3386 -1 5 805 821 37 46 0 chr9 28889045 28889154 -95187018 + L1Md_A LINE L1 6468 6581 -1 5 805 321 279 70 108 chr9 28889205 28889362 -95186810 + MER5A1 DNA MER1_type 13 163 -3 5 805 366 338 142 14 chr9 28891031 28891250 -95184922 - MLT1H1 LTR MaLR -284 271 25 5 805 430 269 85 0 chr9 28891712 28891842 -95184330 + MIR SINE MIR 117 257 -5 5 805 326 271 218 28 chr9 28891848 28892064 -95184108 - MARNA DNA Mariner -202 384 128 5 805 180 152 0 0 chr9 28892064 28892097 -95184075 + C-rich Low_complexity Low_complexity 1 33 0 5 805 381 182 20 10 chr9 28892586 28892686 -95183486 + CT-rich Low_complexity Low_complexity 5 105 0 5 805 592 177 17 11 chr9 28892688 28892865 -95183307 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 805 250 344 94 19 chr9 28894745 28894905 -95181267 - MER58B DNA MER1_type -20 321 150 5 805 391 263 59 0 chr9 28895593 28895711 -95180461 - MIRb SINE MIR -107 161 37 5 805 272 389 36 15 chr9 28897139 28897335 -95178837 - MIR SINE MIR -7 255 56 5 805 231 298 48 0 chr9 28897465 28897549 -95178623 + MIR SINE MIR 42 129 -133 5 805 380 269 67 8 chr9 28898356 28898476 -95177696 + RMER15 LTR ERVL 432 558 -17 5 805 183 42 0 0 chr9 28898772 28898796 -95177376 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 805 943 277 157 19 chr9 28898827 28899247 -95176925 + Lx8 LINE L1 6992 7469 -4 5 805 734 75 9 0 chr9 28899577 28899683 -95176489 + (TA)n Simple_repeat Simple_repeat 2 108 0 5 805 314 324 20 0 chr9 28899842 28899944 -95176228 - PB1D10 SINE Alu -9 108 5 5 805 21 57 0 0 chr9 28901734 28901769 -95174403 + AT_rich Low_complexity Low_complexity 1 35 0 5 805 261 0 0 0 chr9 28901895 28901924 -95174248 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 805 510 31 0 0 chr9 28901924 28901987 -95174185 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 805 528 59 0 0 chr9 28903019 28903087 -95173085 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 805 669 286 56 80 chr9 28903357 28903570 -95172602 + B3A SINE B2 8 215 -1 5 805 180 0 0 0 chr9 28903635 28903655 -95172517 + (CAAG)n Simple_repeat Simple_repeat 1 20 0 5 805 255 388 12 0 chr9 28904792 28904872 -95171300 - PB1D10 SINE Alu -32 85 5 5 805 538 145 0 0 chr9 28905339 28905415 -95170757 - Lx5 LINE L1 -506 6544 6469 5 805 1079 178 26 0 chr9 28905421 28905612 -95170560 + Lx5 LINE L1 6814 7009 -41 5 805 369 0 0 0 chr9 28906164 28906205 -95169967 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 805 348 127 0 0 chr9 28906206 28906261 -95169911 + (CACG)n Simple_repeat Simple_repeat 1 55 0 5 805 201 304 109 0 chr9 28906772 28906864 -95169308 - MER5A DNA MER1_type 0 189 88 5 805 213 286 70 26 chr9 28907067 28907182 -95168990 + MIR SINE MIR 143 262 0 5 805 877 324 64 9 chr9 28907276 28907622 -95168550 - Tigger7 DNA MER2_type -7 2484 2120 5 805 800 329 30 10 chr9 28907618 28907913 -95168259 - Tigger7 DNA MER2_type -2190 301 1 5 805 276 214 88 18 chr9 28909253 28909310 -95166862 + ID4 SINE ID 3 63 -20 5 805 238 300 83 0 chr9 28909259 28909319 -95166853 + tRNA-Ala-GCG tRNA tRNA 2 66 -9 5 805 2236 170 48 3 chr9 28909359 28909736 -95166436 + ORR1B1 LTR MaLR 1 394 0 5 805 395 325 16 8 chr9 28909753 28909874 -95166298 + RSINE1 SINE B4 3 124 -41 5 805 717 12 0 0 chr9 28909899 28909981 -95166191 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 805 429 311 0 45 chr9 28910092 28910247 -95165925 - B1F2 SINE Alu 0 149 2 5 805 735 118 0 0 chr9 28911401 28911545 -95164627 + (TC)n Simple_repeat Simple_repeat 1 144 0 5 805 558 0 0 0 chr9 28915279 28915341 -95160831 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 805 715 367 43 31 chr9 28915512 28915903 -95160269 + LTR16A LTR ERVL 32 427 -24 5 805 201 302 81 32 chr9 28916194 28916317 -95159855 + L2a LINE L2 3297 3425 -1 5 805 511 28 42 0 chr9 28917826 28917898 -95158274 + (ATATG)n Simple_repeat Simple_repeat 2 76 0 5 805 452 121 0 11 chr9 28918843 28918935 -95157237 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 805 267 365 77 59 chr9 28920319 28920642 -95155530 - L2c LINE L2 0 3387 3059 5 805 198 0 0 0 chr9 28921483 28921505 -95154667 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 5 805 465 19 0 0 chr9 28923402 28923456 -95152716 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 805 240 130 0 0 chr9 28923468 28923514 -95152658 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 805 197 297 0 86 chr9 28923636 28923717 -95152455 - MIRc SINE MIR -112 156 83 5 805 206 356 18 53 chr9 28923837 28924006 -95152166 - MIR SINE MIR -14 248 86 5 805 23821 20 0 2 chr9 28926743 28929480 -95146692 + L1Md_F2 LINE L1 2854 5586 -297 5 805 8717 43 2 2 chr9 28929480 28930476 -95145696 + L1Md_F2 LINE L1 5587 6582 0 5 805 356 289 15 38 chr9 28933820 28933953 -95142219 + MIR SINE MIR 119 248 -14 5 805 414 0 0 0 chr9 28934337 28934383 -95141789 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 805 272 220 0 157 chr9 28934830 28934900 -95141272 - ID4_ SINE ID -8 75 17 5 805 3569 33 5 0 chr9 28934995 28935389 -95140783 - MTA_Mm LTR MaLR 0 396 1 5 805 23 33 0 0 chr9 28935452 28935482 -95140690 + AT_rich Low_complexity Low_complexity 1 30 0 5 805 408 200 13 26 chr9 28935926 28936080 -95140092 + (TG)n Simple_repeat Simple_repeat 2 153 0 5 805 202 209 132 15 chr9 28937370 28937438 -95138734 + MIR3 SINE MIR 86 161 -47 5 805 402 277 124 59 chr9 28937448 28937617 -95138555 - MER20 DNA MER1_type -13 206 27 5 805 252 86 0 0 chr9 28938952 28938987 -95137185 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 805 474 218 0 0 chr9 28939401 28939511 -95136661 + T-rich Low_complexity Low_complexity 1 110 0 5 805 745 215 20 59 chr9 28940031 28940234 -95135938 + Lx7 LINE L1 5689 5883 -1813 5 805 1949 169 65 19 chr9 28940420 28940787 -95135385 - ORR1B1 LTR MaLR -8 386 3 5 805 385 316 82 143 chr9 28940791 28941301 -95134871 + Lx8 LINE L1 6109 6587 -886 5 805 574 229 43 37 chr9 28941301 28941464 -95134708 + MTD LTR MaLR 256 419 0 5 805 934 339 15 12 chr9 28941526 28941857 -95134315 + Lx8 LINE L1 7066 7397 -76 5 805 200 306 0 0 chr9 28942545 28942594 -95133578 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 5 805 2107 154 77 20 chr9 28943534 28943925 -95132247 - MTC LTR MaLR -8 413 1 5 805 239 54 27 0 chr9 28944267 28944304 -95131868 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 805 204 376 29 29 chr9 28946004 28946108 -95130064 - MIR SINE MIR -150 112 9 5 805 467 284 101 64 chr9 28949728 28949995 -95126177 + B4 SINE B4 2 278 -14 5 805 4999 70 0 11 chr9 28950071 28950719 -95125453 - L1Md_F2 LINE L1 -5 6577 5937 5 805 183 80 0 0 chr9 28950758 28950783 -95125389 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 805 234 176 0 0 chr9 28950829 28950880 -95125292 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 805 4633 260 72 22 chr9 28951359 28952609 -95123563 + Lx6 LINE L1 5937 7248 -212 5 805 378 61 0 0 chr9 28952615 28952664 -95123508 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5 805 741 188 0 57 chr9 28952664 28952822 -95123350 + Lx7 LINE L1 7548 7696 0 5 805 279 93 0 0 chr9 28954620 28954663 -95121509 + (ATG)n Simple_repeat Simple_repeat 2 44 0 5 805 459 102 56 0 chr9 28955238 28955245 -95120927 + (CA)n Simple_repeat Simple_repeat 2 8 0 5 805 213 65 0 0 chr9 28955245 28955276 -95120896 + (CCA)n Simple_repeat Simple_repeat 2 32 0 5 805 459 102 56 0 chr9 28955276 28955376 -95120796 + (CA)n Simple_repeat Simple_repeat 1 106 0 5 805 351 291 59 7 chr9 28956211 28956346 -95119826 - MIRc SINE MIR -37 231 90 5 805 21 0 0 0 chr9 28956408 28956429 -95119743 + AT_rich Low_complexity Low_complexity 1 21 0 5 805 454 311 115 43 chr9 28956986 28957265 -95118907 + RMER15 LTR ERVL 277 575 0 5 805 425 339 50 20 chr9 28959321 28959520 -95116652 + MLT1A0 LTR MaLR 11 215 -150 5 805 357 24 0 0 chr9 28959626 28959668 -95116504 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 805 356 297 8 8 chr9 28959687 28959806 -95116366 + MLT1A0 LTR MaLR 238 356 -9 5 805 214 409 45 9 chr9 28960157 28960268 -95115904 + L2b LINE L2 3257 3371 -4 5 805 330 313 0 29 chr9 28961465 28961559 -95114613 + PB1D10 SINE Alu 11 103 -14 5 805 216 0 0 0 chr9 28961559 28961583 -95114589 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 5 805 513 0 0 0 chr9 28961947 28962004 -95114168 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 805 354 45 0 0 chr9 28962611 28962655 -95113517 + (GAGTG)n Simple_repeat Simple_repeat 2 45 0 5 805 25 0 0 0 chr9 28964296 28964321 -95111851 + AT_rich Low_complexity Low_complexity 1 25 0 5 805 258 176 86 22 chr9 28964928 28965032 -95111140 + L1M1 LINE L1 5782 5893 -263 6 805 477 0 0 0 chr9 28965717 28965770 -95110402 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 805 325 322 62 20 chr9 28965804 28965950 -95110222 - B4A SINE B4 -18 274 123 6 805 1889 198 22 80 chr9 28966271 28966577 -95109595 + RMER6B LTR ERVK 1 298 -163 6 805 186 43 0 0 chr9 28966577 28966600 -95109572 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 805 1889 198 22 80 chr9 28966600 28966782 -95109390 + RMER6B LTR ERVK 299 461 0 6 806 194 365 0 23 chr9 28967197 28967284 -95108888 - MIR SINE MIR -66 196 112 6 806 1316 163 5 5 chr9 28968271 28968493 -95107679 + URR1A DNA MER1_type 5 226 0 6 806 396 0 0 0 chr9 28968673 28968717 -95107455 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 806 191 324 106 42 chr9 28971946 28972210 -95103962 - L2a LINE L2 -43 3383 3103 6 806 200 79 0 50 chr9 28972842 28972882 -95103290 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 806 716 312 28 0 chr9 28973101 28973316 -95102856 - MER2 DNA MER2_type -26 319 99 6 806 331 382 74 11 chr9 28973344 28973627 -95102545 - MLT1F LTR MaLR -44 504 204 6 806 924 258 128 20 chr9 28973827 28974274 -95101898 + RCHARR1 DNA MER1_type 5 499 -475 6 806 189 0 0 0 chr9 28974454 28974475 -95101697 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 6 806 386 292 47 0 chr9 28974621 28974727 -95101445 - PB1D7 SINE Alu -8 112 2 6 806 255 275 0 90 chr9 28974646 28974746 -95101426 - MT2B2 LTR ERVL -342 242 152 6 806 1226 242 102 13 chr9 28974766 28974998 -95101174 + RCHARR1 DNA MER1_type 481 749 -225 6 806 1040 73 71 29 chr9 28974998 28975168 -95101004 + L1Md_F2 LINE L1 6405 6581 -1 6 806 1226 242 102 13 chr9 28975168 28975388 -95100784 + RCHARR1 DNA MER1_type 750 973 -1 6 806 601 279 162 69 chr9 28975517 28975979 -95100193 - MLT1D LTR MaLR 0 505 1 6 806 23 33 0 0 chr9 28976014 28976044 -95100128 + AT_rich Low_complexity Low_complexity 1 30 0 6 806 195 330 33 0 chr9 28976048 28976139 -95100033 - L2c LINE L2 0 3387 3294 6 806 3750 130 25 16 chr9 28979143 28979752 -95096420 + Lx3C LINE L1 6357 6970 -6 6 806 401 0 0 20 chr9 28979758 28979808 -95096364 + (TAA)n Simple_repeat Simple_repeat 3 51 0 6 806 246 252 36 120 chr9 28982146 28982177 -95093995 - B2_Mm2 SINE B2 -6 189 167 6 806 387 0 0 0 chr9 28982177 28982220 -95093952 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 806 618 262 41 100 chr9 28982220 28982386 -95093786 - B3A SINE B2 -26 172 2 6 806 210 354 0 20 chr9 28987795 28987893 -95088279 - MIRc SINE MIR -4 264 169 6 806 303 292 80 12 chr9 28988200 28988363 -95087809 + MTEb LTR MaLR 189 362 -17 6 806 441 0 0 0 chr9 28988418 28988467 -95087705 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 6 806 246 62 0 0 chr9 28989134 28989166 -95087006 + (TCTCTG)n Simple_repeat Simple_repeat 3 34 0 6 806 321 264 31 52 chr9 28989170 28989266 -95086906 - B1F SINE Alu -49 100 7 6 806 492 242 8 0 chr9 28989428 28989548 -95086624 + MER5A1 DNA MER1_type 28 148 -18 6 806 333 0 0 0 chr9 28994409 28994446 -95081726 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 806 460 329 13 7 chr9 28995257 28995407 -95080765 - B3 SINE B2 -5 211 61 6 806 602 364 12 4 chr9 28995837 28996077 -95080095 + MLT2B1 LTR ERVL 74 315 -205 6 806 254 289 22 0 chr9 28996728 28996818 -95079354 + MER46C DNA MER2_type 237 328 -10 6 806 234 323 68 15 chr9 28997315 28997447 -95078725 + LTR33 LTR ERVL 361 499 -16 6 806 279 79 0 0 chr9 28998495 28998533 -95077639 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 6 806 626 265 40 0 chr9 29001174 29001325 -95074847 + RSINE1 SINE B4 3 159 -6 1 806 5317 54 3 0 chr9 29002676 29003324 -95072848 + L1Md_F2 LINE L1 4937 5586 -297 2 806 8299 41 4 3 chr9 29003324 29004319 -95071853 + L1Md_F2 LINE L1 5587 6582 0 2 806 194 307 13 13 chr9 29005131 29005207 -95070965 + MIRb SINE MIR 60 135 -133 3 806 381 43 0 0 chr9 29005208 29005255 -95070917 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 4 806 471 48 0 0 chr9 29005264 29005326 -95070846 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 806 666 146 22 7 chr9 29005905 29006043 -95070129 + CT-rich Low_complexity Low_complexity 2 141 0 6 806 303 28 0 0 chr9 29006069 29006105 -95070067 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 806 1052 89 0 0 chr9 29006105 29006240 -95069932 - B1_Mus1 SINE Alu -13 135 1 8 806 361 362 0 0 chr9 29006448 29006564 -95069608 + PB1D7 SINE Alu 1 116 -4 9 806 477 306 57 0 chr9 29006647 29006804 -95069368 - MER44B DNA MER2_type -346 204 39 1 806 471 18 0 0 chr9 29010658 29010714 -95065458 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 806 236 333 117 17 chr9 29011438 29011621 -95064551 - MIR SINE MIR -38 230 25 1 806 579 29 0 0 chr9 29011723 29011792 -95064380 + (TTTCC)n Simple_repeat Simple_repeat 2 70 0 1 806 180 111 0 0 chr9 29011793 29011820 -95064352 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 1 806 1165 162 72 50 chr9 29019387 29019666 -95056506 - L1MA9 LINE L1 0 6312 6028 1 806 524 267 147 0 chr9 29020270 29020461 -95055711 - L1MA7 LINE L1 -239 6052 5834 1 806 272 247 107 27 chr9 29020490 29020626 -95055546 + L1M3 LINE L1 5647 5798 -514 1 806 237 304 0 52 chr9 29020657 29020754 -95055418 + RSINE1 SINE B4 5 96 -69 1 806 1191 75 0 0 chr9 29021170 29021316 -95054856 + B1_Mus2 SINE Alu 2 147 0 1 806 216 0 0 0 chr9 29021316 29021340 -95054832 + (A)n Simple_repeat Simple_repeat 1 24 0 2 806 2750 248 24 21 chr9 29021404 29022021 -95054151 + Lx6 LINE L1 6833 7451 -9 2 806 324 0 0 0 chr9 29023437 29023473 -95052699 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 806 285 344 39 13 chr9 29025100 29025256 -95050916 - RSINE1 SINE B4 -2 163 4 2 806 267 148 94 47 chr9 29027705 29027875 -95048297 + (CTGTG)n Simple_repeat Simple_repeat 1 178 0 2 806 274 343 0 0 chr9 29027877 29028043 -95048129 + (CTG)n Simple_repeat Simple_repeat 2 167 0 2 806 285 297 0 19 chr9 29029791 29029894 -95046278 + GA-rich Low_complexity Low_complexity 3 103 0 2 806 189 171 0 0 chr9 29033163 29033198 -95042974 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 806 562 146 0 35 chr9 29035921 29035956 -95040216 - BC1_Mm scRNA scRNA -42 110 77 2 806 207 0 0 0 chr9 29035956 29035979 -95040193 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 806 562 146 0 35 chr9 29035979 29036057 -95040115 - BC1_Mm scRNA scRNA -76 76 1 2 806 211 302 71 30 chr9 29036059 29036158 -95040014 - PB1D7 SINE Alu 0 120 18 3 806 257 20 19 57 chr9 29036427 29036480 -95039692 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 3 806 775 110 17 8 chr9 29037090 29037209 -95038963 - PB1D9 SINE Alu 0 120 1 3 806 327 329 90 12 chr9 29037482 29037648 -95038524 - B4A SINE B4 -109 183 5 3 806 414 39 0 0 chr9 29037713 29037765 -95038407 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 806 508 246 20 114 chr9 29037822 29038024 -95038148 - MTEa LTR MaLR -196 183 1 3 806 513 0 0 0 chr9 29039210 29039267 -95036905 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 806 378 0 0 0 chr9 29039267 29039308 -95036864 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 806 411 21 0 0 chr9 29041097 29041145 -95035027 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 806 11544 109 43 4 chr9 29041368 29043792 -95032380 + L1_Mus3 LINE L1 4115 6633 -5 3 806 482 267 43 106 chr9 29043792 29044027 -95032145 - MTEa LTR MaLR -42 337 118 4 806 480 228 0 0 chr9 29045494 29045608 -95030564 + CT-rich Low_complexity Low_complexity 2 115 0 4 806 293 320 38 23 chr9 29047055 29047202 -95028970 + B1F SINE Alu 1 149 0 4 806 495 0 0 0 chr9 29047773 29047828 -95028344 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 806 204 67 0 0 chr9 29047828 29047857 -95028315 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 806 23 0 0 0 chr9 29049174 29049197 -95026975 + AT_rich Low_complexity Low_complexity 1 23 0 4 806 241 246 237 0 chr9 29049449 29049563 -95026609 + L3 LINE CR1 4056 4196 -293 4 806 237 217 0 0 chr9 29049704 29049764 -95026408 + (CCAA)n Simple_repeat Simple_repeat 1 60 0 4 806 1073 219 30 27 chr9 29050250 29050545 -95025627 - MER121 Unknown Unknown -89 323 28 4 806 209 341 52 67 chr9 29051323 29051458 -95024714 + MIRb SINE MIR 22 154 -114 4 806 222 37 0 0 chr9 29052832 29052859 -95023313 + (A)n Simple_repeat Simple_repeat 1 27 0 5 806 351 0 0 0 chr9 29052996 29053035 -95023137 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 806 554 269 91 26 chr9 29053075 29053333 -95022839 - L1MB1 LINE L1 -192 5991 5714 5 806 435 169 0 35 chr9 29054161 29054247 -95021925 + (CTA)n Simple_repeat Simple_repeat 1 83 0 5 806 261 0 0 0 chr9 29055327 29055356 -95020816 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 806 254 309 0 36 chr9 29055824 29055908 -95020264 + CT-rich Low_complexity Low_complexity 3 83 0 5 806 1528 201 171 11 chr9 29056114 29056476 -95019696 - MTC LTR MaLR 0 421 2 5 806 1180 83 0 0 chr9 29056478 29056618 -95019554 + B1_Mus2 SINE Alu 1 140 -7 5 806 213 65 0 0 chr9 29056618 29056649 -95019523 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 806 612 116 0 0 chr9 29056789 29056884 -95019288 + (TTTC)n Simple_repeat Simple_repeat 1 95 0 5 806 474 317 135 13 chr9 29057170 29057400 -95018772 + MLT2C1 LTR ERVL 1 258 -139 6 806 878 286 97 30 chr9 29057720 29058153 -95018019 + Lx9 LINE L1 7164 7625 -19 6 806 1234 304 50 48 chr9 29058183 29058740 -95017432 + MLT1D-int LTR MaLR 328 885 -486 6 806 540 325 47 89 chr9 29058868 29059250 -95016922 + MLT1D-int LTR MaLR 965 1330 -41 6 806 415 358 89 42 chr9 29059294 29059767 -95016405 + MLT1D LTR MaLR 1 495 -10 6 806 387 60 0 0 chr9 29061602 29061652 -95014520 + (CTA)n Simple_repeat Simple_repeat 1 50 0 6 806 190 150 25 0 chr9 29061802 29061842 -95014330 - L4 LINE RTE -567 1462 1422 6 806 363 392 133 29 chr9 29062020 29062335 -95013837 + MLT1A0 LTR MaLR 18 365 0 6 806 219 239 0 0 chr9 29063746 29063813 -95012359 + (CAATT)n Simple_repeat Simple_repeat 2 68 0 6 806 929 270 70 30 chr9 29065670 29065968 -95010204 + MTD LTR MaLR 104 413 -6 6 806 261 304 0 0 chr9 29067114 29067193 -95008979 + B1F SINE Alu 71 149 0 6 806 619 319 109 13 chr9 29068328 29068557 -95007615 - Tigger8 DNA MER2_type -281 385 135 6 806 238 262 16 0 chr9 29068950 29069011 -95007161 + CT-rich Low_complexity Low_complexity 5 66 0 7 806 439 337 78 5 chr9 29069622 29069828 -95006344 - Tigger5 DNA MER2_type 0 2406 2186 7 806 499 136 12 24 chr9 29070096 29070179 -95005993 - 7SK RNA RNA -94 237 156 7 806 277 154 0 127 chr9 29070179 29070250 -95005922 + Lx6 LINE L1 7374 7434 -26 7 806 349 214 14 0 chr9 29070294 29070364 -95005808 + HAL1-3A_ME LINE L1 1948 2018 -840 7 806 231 272 0 0 chr9 29070364 29070500 -95005672 + (CA)n Simple_repeat Simple_repeat 1 136 0 7 806 486 0 0 0 chr9 29071165 29071219 -95004953 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 7 806 334 325 133 86 chr9 29072081 29072360 -95003812 + B4 SINE B4 1 292 0 7 806 636 14 0 0 chr9 29072400 29072473 -95003699 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 7 806 207 0 0 0 chr9 29073118 29073141 -95003031 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 7 806 315 0 0 0 chr9 29074250 29074285 -95001887 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 806 837 86 0 0 chr9 29074285 29074412 -95001760 + (GA)n Simple_repeat Simple_repeat 2 129 0 8 806 23 33 0 0 chr9 29075859 29075889 -95000283 + AT_rich Low_complexity Low_complexity 1 30 0 8 806 189 0 0 0 chr9 29076016 29076037 -95000135 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 8 806 229 259 0 49 chr9 29079168 29079229 -94996943 + B4A SINE B4 86 143 -149 8 806 623 301 27 90 chr9 29079541 29079840 -94996332 + B4A SINE B4 1 280 -12 8 806 378 0 0 0 chr9 29080938 29080980 -94995192 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 806 268 340 72 85 chr9 29081131 29081366 -94994806 - MIR SINE MIR 0 262 31 8 806 387 0 0 0 chr9 29081543 29081586 -94994586 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 806 1266 287 40 51 chr9 29082070 29082441 -94993731 + MTE2b LTR MaLR 8 374 -5 8 806 522 0 0 0 chr9 29082502 29082560 -94993612 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 806 329 279 21 42 chr9 29082703 29082845 -94993327 - L1MA4 LINE L1 -368 5932 5794 9 806 954 276 81 15 chr9 29082923 29083276 -94992896 - L1MA4 LINE L1 -518 5782 5389 9 806 577 264 13 34 chr9 29083276 29083425 -94992747 - B1F SINE Alu -3 146 1 9 806 610 286 66 93 chr9 29083425 29083510 -94992662 - L1MA4 LINE L1 -492 5388 5319 9 806 388 272 19 28 chr9 29083784 29083890 -94992282 - PB1D10 SINE Alu -12 105 1 9 806 11683 9 1 2 chr9 29084981 29086979 -94989193 - L1Md_A LINE L1 0 6582 4589 9 806 2005 206 20 17 chr9 29087179 29087585 -94988587 - MTB_Mm LTR MaLR 0 407 1 9 806 236 311 47 63 chr9 29088135 29088262 -94987910 - MIRc SINE MIR -106 162 38 9 806 414 0 0 0 chr9 29088741 29088787 -94987385 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 806 1808 213 48 15 chr9 29089460 29089856 -94986316 - MTD LTR MaLR -9 410 2 9 806 472 331 13 26 chr9 29090169 29090324 -94985848 - B4A SINE B4 -1 291 139 9 806 226 283 84 50 chr9 29090794 29090913 -94985259 - MIRb SINE MIR -70 198 76 1 806 342 0 0 0 chr9 29091371 29091409 -94984763 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 806 213 224 0 0 chr9 29093214 29093272 -94982900 + (CATA)n Simple_repeat Simple_repeat 4 61 0 1 806 234 311 18 134 chr9 29093439 29093662 -94982510 - L2c LINE L2 -6 3381 3185 1 806 759 83 25 0 chr9 29093836 29093957 -94982215 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 1 806 564 310 62 81 chr9 29095404 29095727 -94980445 - ORR1E LTR MaLR -39 320 4 1 806 187 242 0 0 chr9 29096565 29096598 -94979574 - L2c LINE L2 -220 3155 3123 1 806 197 65 0 31 chr9 29097099 29097131 -94979041 + (GGA)n Simple_repeat Simple_repeat 1 31 0 1 806 244 311 101 0 chr9 29097208 29097327 -94978845 + B1_Mur1 SINE Alu 5 135 -14 1 807 186 386 107 16 chr9 29098204 29098391 -94977781 + L2a LINE L2 2914 3117 -309 1 807 23 0 0 0 chr9 29098511 29098534 -94977638 + AT_rich Low_complexity Low_complexity 1 23 0 1 807 483 259 103 57 chr9 29098814 29099076 -94977096 + Tigger15a DNA TcMar 402 675 -40 1 807 651 319 106 44 chr9 29099494 29099930 -94976242 + L1MCa LINE L1 204 666 -5842 1 807 316 313 127 65 chr9 29100031 29100291 -94975881 + L1MCa LINE L1 943 1218 -5290 1 807 296 286 139 25 chr9 29101633 29101791 -94974381 - MER5A DNA MER1_type 0 189 14 1 807 410 278 0 0 chr9 29101865 29101955 -94974217 - PB1D10 SINE Alu -7 110 21 1 807 1180 276 93 17 chr9 29102423 29102777 -94973395 - MTD LTR MaLR -14 405 25 1 807 240 302 84 42 chr9 29105367 29105675 -94970497 + L1MB8 LINE L1 1488 1808 -5526 1 807 23 54 0 0 chr9 29106442 29106479 -94969693 + AT_rich Low_complexity Low_complexity 1 37 0 1 807 512 304 37 25 chr9 29106479 29106641 -94969531 + B3A SINE B2 2 165 -33 1 807 2991 297 102 54 chr9 29106958 29107225 -94968947 + L1MB8 LINE L1 3669 3945 -3061 1 807 1250 68 0 20 chr9 29107225 29107375 -94968797 + B1_Mus2 SINE Alu 1 147 0 1 807 2991 297 102 54 chr9 29107375 29108390 -94967782 + L1MB8 LINE L1 3946 4994 -2012 1 807 504 48 0 0 chr9 29108390 29108453 -94967719 + (CCA)n Simple_repeat Simple_repeat 1 63 0 1 807 2991 300 109 58 chr9 29108453 29110362 -94965810 + L1MB8 LINE L1 4995 7021 -17 1 807 531 0 0 0 chr9 29110910 29110969 -94965203 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 807 255 340 29 0 chr9 29111553 29111656 -94964516 + MamRep434 DNA TcMar 5 110 -316 1 807 423 231 8 25 chr9 29111651 29111771 -94964401 + MamRep434 DNA TcMar 245 362 -64 1 807 224 246 16 0 chr9 29111806 29111867 -94964305 + CT-rich Low_complexity Low_complexity 4 65 0 1 807 3445 35 5 0 chr9 29115770 29116174 -94959998 - L1Md_F2 LINE L1 0 6582 6177 1 807 715 221 87 16 chr9 29116333 29116405 -94959767 + B3 SINE B2 1 70 -146 1 807 486 0 0 0 chr9 29116405 29116459 -94959713 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 807 715 221 87 16 chr9 29116459 29116570 -94959602 + B3 SINE B2 71 197 -19 1 807 198 103 0 0 chr9 29116602 29116631 -94959541 + (TATATG)n Simple_repeat Simple_repeat 6 34 0 1 807 797 269 32 47 chr9 29116677 29116954 -94959218 - B4 SINE B4 -19 273 1 1 807 360 0 0 0 chr9 29117193 29117233 -94958939 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 807 438 20 0 0 chr9 29120528 29120579 -94955593 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 807 240 35 0 0 chr9 29120617 29120646 -94955526 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 807 193 178 22 22 chr9 29121170 29121216 -94954956 + MER5A DNA MER1_type 10 55 -134 1 807 468 0 0 0 chr9 29121267 29121319 -94954853 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 807 576 40 0 0 chr9 29121337 29121412 -94954760 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 807 630 58 9 9 chr9 29122017 29122122 -94954050 + L1Md_F2 LINE L1 6477 6581 -1 1 807 323 299 23 38 chr9 29122137 29122269 -94953903 - MIR SINE MIR -111 151 22 1 807 681 228 0 0 chr9 29122608 29122744 -94953428 + B1F2 SINE Alu 4 139 -10 1 807 183 42 0 0 chr9 29123831 29123855 -94952317 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 807 276 317 16 62 chr9 29123877 29124005 -94952167 + L2c LINE L2 3266 3387 0 1 807 332 0 47 0 chr9 29125714 29125757 -94950415 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 807 478 229 36 2 chr9 29127936 29128074 -94948098 + MIRb SINE MIR 82 224 -38 1 807 234 314 43 28 chr9 29128253 29128394 -94947778 - L1MA7 LINE L1 -11 6280 6138 1 807 468 77 0 0 chr9 29128613 29128678 -94947494 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 807 513 309 82 37 chr9 29128744 29128989 -94947183 - B4 SINE B4 -36 256 1 1 807 726 314 134 3 chr9 29129018 29129392 -94946780 - L1MA7 LINE L1 -298 5993 5571 1 807 644 80 10 0 chr9 29131014 29131114 -94945058 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 1 807 1133 88 0 20 chr9 29131129 29131279 -94944893 - B1_Mus2 SINE Alu 0 147 1 1 807 465 19 0 0 chr9 29131283 29131337 -94944835 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1 807 345 270 10 0 chr9 29131339 29131439 -94944733 - Tigger7 DNA MER2_type -101 2390 2290 1 807 477 0 0 0 chr9 29131841 29131894 -94944278 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 807 315 262 12 0 chr9 29132948 29133028 -94943144 - ID4_ SINE ID -2 81 1 1 807 633 27 0 0 chr9 29134207 29134282 -94941890 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 807 1038 143 0 0 chr9 29134598 29134807 -94941365 + (CA)n Simple_repeat Simple_repeat 1 209 0 1 807 375 342 52 57 chr9 29134915 29135126 -94941046 + B4A SINE B4 11 220 -72 1 807 287 282 0 13 chr9 29135136 29135215 -94940957 + ID4_ SINE ID 3 80 -3 1 807 332 43 0 21 chr9 29135318 29135365 -94940807 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 807 236 335 90 53 chr9 29135648 29135837 -94940335 + MLT1I LTR MaLR 15 210 -201 1 807 27 29 0 0 chr9 29136145 29136179 -94939993 + AT_rich Low_complexity Low_complexity 1 34 0 1 807 766 153 82 30 chr9 29136274 29136409 -94939763 + B1_Mus1 SINE Alu 2 143 -5 1 807 667 234 20 7 chr9 29136693 29136869 -94939303 - B3 SINE B2 -14 184 1 1 807 655 288 16 16 chr9 29136897 29137084 -94939088 - B3A SINE B2 -4 194 8 1 807 476 320 52 146 chr9 29137844 29138247 -94937925 + MLT1A0 LTR MaLR 1 365 0 1 807 2095 163 70 3 chr9 29138503 29138872 -94937300 - Lx4A LINE L1 0 7058 6665 1 807 2021 170 22 11 chr9 29138872 29139229 -94936943 + Lx4A LINE L1 6329 6689 -369 1 807 668 301 30 9 chr9 29140860 29141091 -94935081 - Tigger5 DNA MER2_type -7 2399 2164 1 807 301 330 74 70 chr9 29141273 29141517 -94934655 + MLT1J1 LTR MaLR 25 269 -175 1 807 575 322 79 86 chr9 29141763 29142194 -94933978 + MLT1J1-int LTR MaLR 103 530 -857 1 807 252 303 11 0 chr9 29142403 29142492 -94933680 + MLT1J1-int LTR MaLR 815 904 -483 1 807 581 261 30 7 chr9 29144933 29145068 -94931104 - B1_Mur1 SINE Alu -11 138 1 1 807 305 216 0 102 chr9 29146150 29146248 -94929924 + MTEb LTR MaLR 5 92 -287 1 807 415 274 41 130 chr9 29146358 29146599 -94929573 + MTEb LTR MaLR 117 364 -15 1 807 276 130 0 0 chr9 29148652 29148698 -94927474 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 1 807 234 0 0 0 chr9 29148771 29148797 -94927375 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 807 753 224 52 28 chr9 29150181 29150392 -94925780 + B3 SINE B2 1 216 0 1 807 549 100 78 43 chr9 29151327 29151442 -94924730 + L1Md_F2 LINE L1 6464 6582 0 1 807 1229 271 52 19 chr9 29151593 29151958 -94924214 - MTE2b LTR MaLR 0 379 3 1 807 1267 233 87 36 chr9 29152064 29152420 -94923752 + ORR1D1 LTR MaLR 1 374 0 1 807 710 282 150 4 chr9 29153558 29153804 -94922368 + Lx9 LINE L1 7063 7344 -300 1 807 708 35 0 0 chr9 29153880 29153967 -94922205 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 807 557 28 14 0 chr9 29153985 29154056 -94922116 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 1 807 259 344 42 0 chr9 29154431 29154527 -94921645 + B3A SINE B2 71 170 -28 1 807 252 77 0 0 chr9 29154534 29154573 -94921599 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 1 807 447 68 0 0 chr9 29154615 29154674 -94921498 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 807 259 314 144 11 chr9 29154844 29155018 -94921154 - MIR SINE MIR -34 228 32 1 807 3156 174 40 83 chr9 29156522 29157062 -94919110 + Lx5 LINE L1 6407 6905 -145 1 807 279 0 0 0 chr9 29157062 29157093 -94919079 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 807 459 0 0 0 chr9 29157093 29157143 -94919029 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 807 3156 174 40 83 chr9 29157143 29157267 -94918905 + Lx5 LINE L1 6906 7043 -7 1 807 441 157 0 0 chr9 29159177 29159292 -94916880 + (CAGA)n Simple_repeat Simple_repeat 4 118 0 1 807 216 0 0 0 chr9 29159344 29159368 -94916804 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 807 271 222 11 69 chr9 29161723 29161810 -94914362 + LTR40a LTR ERVL 83 164 -355 1 807 354 205 0 0 chr9 29161815 29161893 -94914279 + (TAG)n Simple_repeat Simple_repeat 3 80 0 1 807 1124 216 0 13 chr9 29161908 29162142 -94914030 + Lx4B LINE L1 6814 7044 -14 1 807 243 0 0 0 chr9 29162142 29162169 -94914003 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1 807 409 318 118 42 chr9 29162177 29162440 -94913732 + LTR40a LTR ERVL 237 519 0 1 807 506 333 80 25 chr9 29162886 29163160 -94913012 - MLT1A0 LTR MaLR -76 289 1 1 807 2144 123 28 0 chr9 29163239 29163556 -94912616 + ORR1A3 LTR MaLR 1 326 0 1 807 605 365 52 50 chr9 29164285 29164711 -94911461 + HERVL40-int LTR ERVL 2480 2918 -2612 1 807 1170 91 0 0 chr9 29164711 29164876 -94911296 + (GGAAA)n Simple_repeat Simple_repeat 3 167 0 1 807 605 365 52 50 chr9 29164876 29164973 -94911199 + HERVL40-int LTR ERVL 2919 3004 -2526 1 807 685 300 49 38 chr9 29165453 29165741 -94910431 + B4A SINE B4 1 291 -1 1 807 433 308 92 0 chr9 29166567 29166794 -94909378 - MER2 DNA MER2_type 0 345 98 1 807 605 175 16 0 chr9 29167127 29167253 -94908919 + (TATATG)n Simple_repeat Simple_repeat 5 132 0 1 807 345 340 58 7 chr9 29167263 29167417 -94908755 - RSINE1 SINE B4 -2 163 2 1 807 373 270 131 7 chr9 29167730 29167883 -94908289 + HERVL40-int LTR ERVL 5328 5499 -31 1 807 935 93 0 7 chr9 29169972 29170113 -94906059 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 1 807 314 174 11 44 chr9 29170909 29170999 -94905173 + Lx9 LINE L1 7550 7636 -8 1 807 335 302 23 0 chr9 29172567 29172696 -94903476 + Ricksha_c DNA MuDR 355 486 -1562 1 807 384 311 45 62 chr9 29173420 29173663 -94902509 + L1M5 LINE L1 5574 5812 -312 1 807 253 260 93 10 chr9 29173801 29173898 -94902274 + B4A SINE B4 167 271 -21 1 807 24 53 0 0 chr9 29174023 29174061 -94902111 + AT_rich Low_complexity Low_complexity 1 38 0 2 807 210 128 85 0 chr9 29175337 29175384 -94900788 + A-rich Low_complexity Low_complexity 1 51 0 2 807 527 78 13 0 chr9 29175515 29175592 -94900580 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 807 201 121 0 0 chr9 29175593 29175626 -94900546 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 807 243 0 0 0 chr9 29175818 29175845 -94900327 + (A)n Simple_repeat Simple_repeat 1 27 0 2 807 308 305 0 103 chr9 29176277 29176394 -94899778 - PB1D10 SINE Alu -12 105 1 2 807 268 347 0 0 chr9 29177824 29177896 -94898276 + ID4_ SINE ID 2 73 -10 2 807 244 265 112 47 chr9 29179169 29179276 -94896896 - L2a LINE L2 -42 3384 3271 2 807 1124 273 39 4 chr9 29179300 29179678 -94896494 + L1MA9 LINE L1 5697 6096 -72 2 807 346 252 49 32 chr9 29181498 29181621 -94894551 + MLT1A1 LTR MaLR 20 144 -264 2 807 2193 201 19 2 chr9 29182044 29182458 -94893714 + MTC LTR MaLR 1 421 0 2 807 225 0 0 0 chr9 29182607 29182632 -94893540 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2 807 483 316 82 12 chr9 29182645 29182815 -94893357 - B3A SINE B2 -16 182 1 2 807 212 167 24 0 chr9 29182962 29183004 -94893168 + (ATG)n Simple_repeat Simple_repeat 3 45 0 2 807 1279 263 103 3 chr9 29183056 29183433 -94892739 - MTD LTR MaLR 0 419 5 2 807 295 291 23 11 chr9 29183631 29183718 -94892454 + PB1D10 SINE Alu 21 108 -9 2 807 337 341 99 12 chr9 29187566 29187738 -94888434 + B4A SINE B4 96 282 -10 2 807 213 121 0 0 chr9 29187817 29187850 -94888322 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2 807 513 32 0 0 chr9 29187860 29187923 -94888249 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 2 807 669 25 0 0 chr9 29189200 29189279 -94886893 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 807 248 368 67 34 chr9 29189331 29189480 -94886692 + MLT1J2 LTR MaLR 275 428 -20 2 807 261 0 0 0 chr9 29190171 29190200 -94885972 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 2 807 231 196 0 0 chr9 29190874 29190920 -94885252 + GA-rich Low_complexity Low_complexity 2 47 0 2 807 243 188 0 20 chr9 29192326 29192375 -94883797 + CT-rich Low_complexity Low_complexity 3 50 0 2 807 316 312 51 76 chr9 29193385 29193503 -94882669 + L2b LINE L2 3246 3360 -15 2 807 23 0 0 0 chr9 29193953 29193976 -94882196 + AT_rich Low_complexity Low_complexity 1 23 0 2 807 978 121 6 6 chr9 29193976 29194134 -94882038 - Lx4A LINE L1 -1 7057 6900 2 807 511 301 13 6 chr9 29195117 29195274 -94880898 + RSINE1 SINE B4 3 160 -5 2 807 285 302 98 53 chr9 29195366 29195611 -94880561 - Tigger15a DNA TcMar -30 685 430 2 807 378 0 0 0 chr9 29195634 29195676 -94880496 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 807 351 96 0 0 chr9 29196811 29196863 -94879309 + (CTG)n Simple_repeat Simple_repeat 2 53 0 2 807 230 287 20 78 chr9 29197131 29197233 -94878939 - MIRb SINE MIR -39 229 134 2 807 559 294 59 0 chr9 29197515 29197668 -94878504 + RSINE1 SINE B4 3 164 -1 2 807 315 0 0 0 chr9 29197668 29197703 -94878469 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 2 807 21 0 0 0 chr9 29197707 29197728 -94878444 + AT_rich Low_complexity Low_complexity 1 21 0 2 807 21 0 0 0 chr9 29198187 29198208 -94877964 + AT_rich Low_complexity Low_complexity 1 21 0 2 807 218 338 39 78 chr9 29199922 29200076 -94876096 + L2b LINE L2 3207 3354 -21 2 807 184 77 0 49 chr9 29200158 29200199 -94875973 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 2 807 240 342 13 0 chr9 29201053 29201129 -94875043 + ID4_ SINE ID 2 78 -5 2 807 635 125 18 0 chr9 29201130 29201242 -94874930 + (CATA)n Simple_repeat Simple_repeat 3 116 0 2 807 250 297 143 35 chr9 29201407 29201637 -94874535 - L1MA6 LINE L1 -84 6216 5962 2 807 196 53 53 0 chr9 29202673 29202711 -94873461 + (TTG)n Simple_repeat Simple_repeat 1 40 0 2 807 186 308 31 0 chr9 29202746 29202811 -94873361 - MIR SINE MIR -21 241 175 2 807 554 296 103 24 chr9 29202959 29203212 -94872960 - Tigger7 DNA MER2_type -4 2487 2215 2 807 964 308 91 0 chr9 29203218 29203582 -94872590 - Tigger7 DNA MER2_type -2094 397 1 2 807 269 277 45 102 chr9 29204951 29205128 -94871044 - L1MA6 LINE L1 -1 6299 6133 2 807 245 320 113 0 chr9 29205163 29205260 -94870912 - PB1 SINE Alu -18 109 2 2 807 280 366 23 15 chr9 29206737 29206870 -94869302 - MLT1J1 LTR MaLR -108 336 203 2 807 256 247 74 29 chr9 29207486 29207631 -94868541 - MIR SINE MIR -107 155 10 2 807 391 297 119 22 chr9 29208089 29208358 -94867814 - L2a LINE L2 -1 3425 3131 2 807 792 263 10 10 chr9 29208645 29208845 -94867327 + B3 SINE B2 4 203 -13 2 807 276 129 78 10 chr9 29208850 29208952 -94867220 + (TA)n Simple_repeat Simple_repeat 1 109 0 2 807 444 335 117 28 chr9 29210097 29210422 -94865750 - MLT1C LTR MaLR -13 454 101 2 807 252 86 0 0 chr9 29212003 29212038 -94864134 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 807 215 208 0 36 chr9 29212201 29212256 -94863916 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2 807 280 167 0 0 chr9 29212936 29212978 -94863194 + polypurine Low_complexity Low_complexity 2 43 0 2 807 827 160 6 0 chr9 29212978 29213134 -94863038 + GA-rich Low_complexity Low_complexity 4 160 0 2 807 188 318 7 87 chr9 29214899 29215037 -94861135 - L2c LINE L2 -1 3386 3260 2 807 269 325 119 13 chr9 29216180 29216339 -94859833 + MIRb SINE MIR 68 243 -25 2 807 282 182 60 15 chr9 29216566 29216633 -94859539 + MIR SINE MIR 116 185 -77 2 807 351 0 0 0 chr9 29223044 29223083 -94853089 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 807 396 0 0 0 chr9 29223083 29223126 -94853046 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 807 197 259 158 18 chr9 29224021 29224135 -94852037 - MIR SINE MIR -60 148 19 2 807 194 91 30 0 chr9 29224769 29224802 -94851370 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2 807 253 220 203 78 chr9 29226414 29226567 -94849605 + MIR3 SINE MIR 34 205 -3 2 807 321 207 0 0 chr9 29227293 29227375 -94848797 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 807 331 265 68 8 chr9 29227402 29227535 -94848637 - L1MA6 LINE L1 -364 5936 5796 2 807 684 77 0 0 chr9 29227538 29227642 -94848530 + (TC)n Simple_repeat Simple_repeat 1 104 0 2 807 233 216 0 0 chr9 29227645 29227696 -94848476 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 2 808 270 345 49 105 chr9 29229220 29229647 -94846525 + CR1_Mam LINE CR1 1219 1621 -583 2 808 262 337 78 6 chr9 29229728 29229895 -94846277 + MIR SINE MIR 22 200 -62 2 808 294 29 0 0 chr9 29230488 29230523 -94845649 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 808 345 47 0 0 chr9 29231585 29231628 -94844544 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 808 210 174 0 0 chr9 29231774 29231820 -94844352 + (CATA)n Simple_repeat Simple_repeat 4 49 0 2 808 302 82 0 39 chr9 29232445 29232496 -94843676 + (CATA)n Simple_repeat Simple_repeat 2 50 0 2 808 200 200 0 0 chr9 29232497 29232532 -94843640 + (TATG)n Simple_repeat Simple_repeat 1 35 0 2 808 336 48 0 0 chr9 29232568 29232610 -94843562 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 808 395 336 96 40 chr9 29234045 29234398 -94841774 + MER20B DNA MER1_type 186 558 -225 2 808 477 244 0 0 chr9 29234906 29235029 -94841143 + (TA)n Simple_repeat Simple_repeat 1 123 0 2 808 624 241 14 7 chr9 29235443 29235585 -94840587 - B1_Mur1 SINE Alu -2 147 5 2 808 285 156 0 0 chr9 29235722 29235767 -94840405 + GA-rich Low_complexity Low_complexity 1 45 0 2 808 677 139 8 0 chr9 29235772 29235894 -94840278 + (GA)n Simple_repeat Simple_repeat 2 124 0 2 808 258 217 17 0 chr9 29238637 29238697 -94837475 - B3A SINE B2 -136 62 2 2 808 186 352 47 16 chr9 29238871 29238998 -94837174 - MIRc SINE MIR -116 152 22 2 808 362 268 158 87 chr9 29239886 29240070 -94836102 + B3A SINE B2 2 198 0 2 808 23 0 0 0 chr9 29242258 29242281 -94833891 + AT_rich Low_complexity Low_complexity 1 23 0 2 808 988 96 11 0 chr9 29242504 29242681 -94833491 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 808 1469 147 0 18 chr9 29243323 29243552 -94832620 - URR1B DNA MER1_type 0 225 1 2 808 396 333 58 8 chr9 29244002 29244244 -94831928 - L1MA9 LINE L1 -59 6253 6000 2 808 751 220 0 0 chr9 29244358 29244499 -94831673 + B1_Mur4 SINE Alu 1 141 -9 2 808 221 322 11 0 chr9 29247767 29247854 -94828318 + MIR SINE MIR 174 261 -1 2 808 232 361 75 29 chr9 29248112 29248286 -94827886 + MIR SINE MIR 57 238 -24 2 808 182 37 0 36 chr9 29249312 29249340 -94826832 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2 808 21 0 0 0 chr9 29249498 29249519 -94826653 + AT_rich Low_complexity Low_complexity 1 21 0 2 808 1211 238 60 20 chr9 29249742 29250089 -94826083 + MLT2D LTR ERVL 5 365 -49 2 808 531 112 0 0 chr9 29250091 29250171 -94826001 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 2 808 1204 60 6 6 chr9 29250190 29250357 -94825815 + (TTCC)n Simple_repeat Simple_repeat 4 170 0 2 808 419 292 0 0 chr9 29250420 29250509 -94825663 - PB1D10 SINE Alu -26 91 3 2 808 495 0 0 0 chr9 29250535 29250590 -94825582 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 808 375 23 0 0 chr9 29251799 29251843 -94824329 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 808 325 337 68 18 chr9 29252587 29252918 -94823254 + L1MC4a LINE L1 7330 7678 -364 2 808 189 0 0 0 chr9 29254674 29254695 -94821477 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 808 738 102 0 0 chr9 29254695 29254821 -94821351 + (GA)n Simple_repeat Simple_repeat 2 128 0 3 808 210 177 38 12 chr9 29254830 29254910 -94821262 + (CAGAGA)n Simple_repeat Simple_repeat 4 85 0 3 808 185 94 0 30 chr9 29256171 29256204 -94819968 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 808 930 24 0 39 chr9 29256731 29256859 -94819313 + B1_Mus2 SINE Alu 22 144 -3 3 808 879 10 0 0 chr9 29256859 29256959 -94819213 + (GAA)n Simple_repeat Simple_repeat 2 101 0 3 808 315 145 0 0 chr9 29257324 29257393 -94818779 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 808 216 0 0 0 chr9 29257393 29257417 -94818755 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 808 459 0 0 0 chr9 29257417 29257467 -94818705 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 808 268 222 0 0 chr9 29259306 29259360 -94816812 - B1F SINE Alu -18 131 78 3 808 2806 60 0 11 chr9 29259753 29260105 -94816067 + L1_Mus1 LINE L1 5940 6287 -280 3 808 3227 84 0 55 chr9 29260099 29260588 -94815584 - L1_Mm LINE L1 -2161 3722 3261 3 808 2376 61 0 0 chr9 29260588 29260881 -94815291 + L1_Mus1 LINE L1 6275 6567 0 3 808 3552 199 44 48 chr9 29261089 29261272 -94814900 + Lx9 LINE L1 5036 5214 -633 3 808 648 0 0 0 chr9 29261272 29261344 -94814828 + (GAAA)n Simple_repeat Simple_repeat 4 75 0 3 808 3552 220 127 38 chr9 29261344 29262770 -94813402 + Lx9 LINE L1 5215 6861 -783 3 808 366 188 80 0 chr9 29262776 29262888 -94813284 + Lx9 LINE L1 7524 7644 0 3 808 390 57 0 0 chr9 29264133 29264186 -94811986 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 808 699 138 58 111 chr9 29264245 29264416 -94811756 + L1Md_F2 LINE L1 6409 6570 -12 3 808 206 163 82 0 chr9 29265459 29265508 -94810664 + G-rich Low_complexity Low_complexity 2 54 0 3 808 270 0 0 0 chr9 29266300 29266330 -94809842 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 808 459 0 0 0 chr9 29266330 29266380 -94809792 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 808 201 182 0 0 chr9 29266953 29266986 -94809186 + A-rich Low_complexity Low_complexity 1 33 0 3 808 261 0 0 0 chr9 29267712 29267741 -94808431 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 808 441 0 0 0 chr9 29267741 29267789 -94808383 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 808 384 22 0 0 chr9 29267790 29267835 -94808337 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 808 248 264 49 19 chr9 29268149 29268249 -94807923 + MIRc SINE MIR 45 148 -120 3 808 272 358 76 14 chr9 29268456 29268666 -94807506 + L3 LINE CR1 4223 4445 -44 3 808 378 0 0 0 chr9 29269602 29269644 -94806528 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 808 189 0 0 0 chr9 29270010 29270031 -94806141 + (A)n Simple_repeat Simple_repeat 1 21 0 3 808 484 305 186 20 chr9 29270610 29270858 -94805314 - B4 SINE B4 0 292 4 3 808 945 271 79 12 chr9 29270968 29271297 -94804875 + MTD LTR MaLR 49 399 -20 3 808 235 271 17 0 chr9 29275752 29275811 -94800361 + G-rich Low_complexity Low_complexity 5 64 0 3 808 261 139 0 0 chr9 29275811 29275854 -94800318 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 808 793 340 4 47 chr9 29276805 29277061 -94799111 + B4A SINE B4 48 292 0 3 808 258 203 0 0 chr9 29277148 29277207 -94798965 + T-rich Low_complexity Low_complexity 1 59 0 3 808 194 299 44 44 chr9 29280060 29280151 -94796021 + L2 LINE L2 2745 2835 -584 3 808 319 358 27 0 chr9 29281638 29281786 -94794386 - MER5A DNA MER1_type 0 189 38 3 808 267 333 0 0 chr9 29281856 29281931 -94794241 - MER81 DNA AcHobo -6 108 34 3 808 1297 202 105 11 chr9 29282063 29282348 -94793824 + Lx9 LINE L1 6709 7020 -624 3 808 756 85 114 15 chr9 29282363 29282495 -94793677 - L1Md_F2 LINE L1 -1 6581 6437 3 808 3421 60 0 0 chr9 29282495 29282909 -94793263 + L1_Mm LINE L1 5470 5883 0 3 808 1987 187 4 110 chr9 29282933 29283396 -94792776 + Lx9 LINE L1 7005 7418 -226 3 808 698 101 9 0 chr9 29283424 29283533 -94792639 + (TA)n Simple_repeat Simple_repeat 1 110 0 3 808 425 19 0 18 chr9 29283744 29283799 -94792373 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 3 808 198 0 0 0 chr9 29284348 29284370 -94791802 + (TGGA)n Simple_repeat Simple_repeat 2 23 0 3 808 711 90 0 0 chr9 29285926 29286026 -94790146 + (GA)n Simple_repeat Simple_repeat 1 100 0 3 808 205 312 12 0 chr9 29288006 29288086 -94788086 + MIRc SINE MIR 188 268 0 3 808 742 338 86 29 chr9 29288711 29289198 -94786974 + MLT1F2 LTR MaLR 1 515 -45 3 808 859 135 12 0 chr9 29290675 29290845 -94785327 + (TC)n Simple_repeat Simple_repeat 2 173 0 3 808 278 318 79 7 chr9 29291263 29291415 -94784757 + Tigger5 DNA MER2_type 23 185 -2221 3 808 1286 50 6 0 chr9 29291432 29291611 -94784561 + (CTGTG)n Simple_repeat Simple_repeat 1 180 0 3 808 1220 62 6 0 chr9 29291626 29291805 -94784367 + (CTGTG)n Simple_repeat Simple_repeat 1 180 0 3 808 713 119 6 28 chr9 29291809 29291850 -94784322 + (GGCTG)n Simple_repeat Simple_repeat 1 39 0 3 808 1403 34 6 0 chr9 29291850 29292027 -94784145 + (CTGTG)n Simple_repeat Simple_repeat 3 180 0 3 808 713 119 6 28 chr9 29292027 29292089 -94784083 + (GGCTG)n Simple_repeat Simple_repeat 4 65 0 3 808 1220 73 6 0 chr9 29292089 29292444 -94783728 + (CTGTG)n Simple_repeat Simple_repeat 1 356 0 3 808 713 119 6 28 chr9 29292444 29292506 -94783666 + (GGCTG)n Simple_repeat Simple_repeat 1 63 0 3 808 1108 95 7 0 chr9 29292506 29292684 -94783488 + (CTGTG)n Simple_repeat Simple_repeat 1 182 -285 3 808 1108 95 7 0 chr9 29292689 29292868 -94783304 + (CTGTG)n Simple_repeat Simple_repeat 183 365 -102 3 808 713 119 6 28 chr9 29292868 29292874 -94783298 + (GGCTG)n Simple_repeat Simple_repeat 2 6 0 3 808 1108 95 7 0 chr9 29292874 29292970 -94783202 + (CTGTG)n Simple_repeat Simple_repeat 366 467 0 3 808 1211 54 7 0 chr9 29293205 29293352 -94782820 + B1_Mus1 SINE Alu 1 148 0 3 808 1067 122 0 6 chr9 29293567 29293740 -94782432 + (GAA)n Simple_repeat Simple_repeat 2 173 0 3 808 365 189 11 0 chr9 29293744 29293834 -94782338 + GA-rich Low_complexity Low_complexity 2 92 0 3 808 1368 258 58 3 chr9 29293881 29294262 -94781910 - MTD LTR MaLR 0 419 18 3 808 537 210 0 0 chr9 29294591 29294734 -94781438 + (CA)n Simple_repeat Simple_repeat 2 144 0 3 808 600 220 191 6 chr9 29294941 29295119 -94781053 - B3 SINE B2 -1 215 5 3 808 236 91 0 0 chr9 29295541 29295574 -94780598 - U2 snRNA snRNA -155 33 1 3 808 438 348 75 28 chr9 29295582 29296271 -94779901 + L1M5 LINE L1 3896 4617 -1529 3 808 423 0 0 0 chr9 29296685 29296732 -94779440 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 808 22 0 0 0 chr9 29296978 29297000 -94779172 + AT_rich Low_complexity Low_complexity 1 22 0 3 808 750 279 0 0 chr9 29297008 29297203 -94778969 + 7SLRNA srpRNA srpRNA 1 194 -120 3 808 263 254 0 15 chr9 29297469 29297537 -94778635 - tRNA-Ala-GCA tRNA tRNA -7 68 2 3 808 315 0 0 0 chr9 29297931 29297966 -94778206 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 3 808 798 178 15 0 chr9 29297966 29298101 -94778071 - B1_Mur4 SINE Alu -12 138 2 3 808 233 219 11 118 chr9 29298298 29298391 -94777781 - B1F SINE Alu 0 149 67 3 808 1257 268 44 33 chr9 29298595 29298962 -94777210 - MTD LTR MaLR -45 374 4 3 808 703 271 106 33 chr9 29298970 29299245 -94776927 + RMER5 LTR ERV1 224 518 -16 3 808 2032 196 58 0 chr9 29299903 29300301 -94775871 + MTC LTR MaLR 1 421 0 3 808 255 301 44 9 chr9 29300752 29300866 -94775306 + L2c LINE L2 3221 3338 -49 3 808 324 327 58 31 chr9 29300928 29301187 -94774985 + L2 LINE L2 1300 1565 -1854 3 808 205 355 57 40 chr9 29301797 29302044 -94774128 + L2 LINE L2 2644 2894 -525 3 808 318 148 0 0 chr9 29302481 29302535 -94773637 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 808 477 314 0 16 chr9 29302558 29302681 -94773491 - RSINE1 SINE B4 -17 148 28 3 808 253 214 16 202 chr9 29303755 29303774 -94772398 - MT2B LTR ERVL -328 273 201 3 808 494 133 0 135 chr9 29303774 29303878 -94772294 - B1_Mur2 SINE Alu -49 100 11 3 808 213 121 0 0 chr9 29304508 29304541 -94771631 + (A)n Simple_repeat Simple_repeat 1 33 0 3 808 314 267 78 49 chr9 29305577 29305905 -94770267 - L1M4 LINE L1 -594 5580 5224 3 808 215 261 130 43 chr9 29306163 29306255 -94769917 + L2a LINE L2 3322 3421 -5 3 808 252 122 0 0 chr9 29306794 29306835 -94769337 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 3 808 675 212 0 82 chr9 29306936 29307095 -94769077 + B1_Mur1 SINE Alu 3 148 -1 3 808 3136 129 46 11 chr9 29308851 29309540 -94766632 + RLTR13D4 LTR ERVK 1 1033 0 3 808 225 331 14 14 chr9 29309568 29309706 -94766466 + (ATGGTG)n Simple_repeat Simple_repeat 6 143 0 3 808 353 261 6 128 chr9 29309706 29309886 -94766286 - HAL1-2a_MD LINE L1 -516 2508 2351 3 808 387 312 45 7 chr9 29310023 29310178 -94765994 - MIR SINE MIR -99 163 3 3 808 231 204 0 0 chr9 29311339 29311388 -94764784 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 808 505 306 30 48 chr9 29311456 29311624 -94764548 - B4 SINE B4 0 292 128 3 808 555 299 0 89 chr9 29311641 29311843 -94764329 - B4 SINE B4 -106 186 3 3 808 721 266 69 15 chr9 29312374 29312576 -94763596 + B3 SINE B2 1 213 -3 3 808 297 75 0 0 chr9 29312913 29312953 -94763219 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 808 1194 61 0 0 chr9 29313178 29313325 -94762847 - B1_Mus2 SINE Alu 0 147 1 3 808 2279 50 0 0 chr9 29313432 29313710 -94762462 + L1Md_A LINE L1 6305 6582 0 3 808 334 20 39 20 chr9 29314115 29314166 -94762006 + (TTTTA)n Simple_repeat Simple_repeat 4 55 0 3 808 2004 148 6 24 chr9 29314451 29314783 -94761389 - ORR1A3 LTR MaLR 0 326 1 3 808 24 0 0 0 chr9 29315313 29315337 -94760835 + AT_rich Low_complexity Low_complexity 1 24 0 3 808 405 0 0 0 chr9 29315950 29315995 -94760177 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 808 1076 249 183 6 chr9 29316533 29316889 -94759283 + MTD LTR MaLR 1 419 0 3 808 228 362 72 50 chr9 29316889 29317110 -94759062 + MLT1C LTR MaLR 242 467 0 3 808 1076 242 11 137 chr9 29318651 29318801 -94757371 - ORR1D1 LTR MaLR -59 315 205 4 808 234 0 0 0 chr9 29318801 29318827 -94757345 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 808 903 201 0 0 chr9 29318827 29318976 -94757196 - B1_Mur3 SINE Alu 0 149 1 4 808 1076 242 11 137 chr9 29318976 29319174 -94756998 - ORR1D1 LTR MaLR -170 204 11 4 808 372 279 37 0 chr9 29319368 29319504 -94756668 + GA-rich Low_complexity Low_complexity 3 143 0 4 808 453 272 44 0 chr9 29320724 29320860 -94755312 + MER2 DNA MER2_type 92 233 -112 4 808 3364 38 5 0 chr9 29321435 29321829 -94754343 - MTA_Mm LTR MaLR 0 396 1 4 808 291 257 43 0 chr9 29323387 29323457 -94752715 - BC1_Mm scRNA scRNA -79 73 1 4 808 26 30 0 0 chr9 29324127 29324160 -94752012 + AT_rich Low_complexity Low_complexity 1 33 0 4 808 472 242 7 36 chr9 29325985 29326122 -94750050 + B3A SINE B2 66 198 0 4 808 332 346 46 0 chr9 29326441 29326594 -94749578 + MTD LTR MaLR 3 162 -257 4 808 286 209 69 77 chr9 29326608 29326772 -94749400 + MTD LTR MaLR 240 419 0 4 808 235 263 27 32 chr9 29328682 29328791 -94747381 - MIR SINE MIR -136 132 26 4 808 26 50 0 0 chr9 29329296 29329336 -94746836 + AT_rich Low_complexity Low_complexity 1 40 0 4 808 202 250 21 0 chr9 29330406 29330454 -94745718 + GA-rich Low_complexity Low_complexity 2 50 0 4 808 378 0 0 0 chr9 29333305 29333347 -94742825 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 808 306 123 0 0 chr9 29333347 29333404 -94742768 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 808 452 277 85 80 chr9 29333574 29333774 -94742398 + MER2 DNA MER2_type 27 227 -118 4 808 677 115 0 17 chr9 29333781 29333896 -94742276 + (GGGAGA)n Simple_repeat Simple_repeat 3 115 0 4 808 588 73 0 0 chr9 29333970 29334052 -94742120 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 808 226 300 83 21 chr9 29335781 29335916 -94740256 + MIRc SINE MIR 27 173 -95 4 808 26 30 0 0 chr9 29336148 29336181 -94739991 + AT_rich Low_complexity Low_complexity 1 33 0 4 808 328 289 63 7 chr9 29337263 29337406 -94738766 + MER2 DNA MER2_type 26 176 -169 4 808 24 0 0 0 chr9 29337419 29337443 -94738729 + AT_rich Low_complexity Low_complexity 1 24 0 4 808 392 325 16 0 chr9 29337553 29337676 -94738496 + MER2 DNA MER2_type 209 333 -12 4 808 660 262 7 0 chr9 29337860 29338001 -94738171 + B1F SINE Alu 1 142 -7 4 808 242 297 118 10 chr9 29338227 29338329 -94737843 - MLT1A1 LTR MaLR -285 123 11 4 808 746 251 37 60 chr9 29340803 29341019 -94735153 + ID_B1 SINE B4 5 215 -9 4 808 216 0 0 0 chr9 29342460 29342484 -94733688 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 808 255 306 128 8 chr9 29342566 29342691 -94733481 - MIRb SINE MIR -3 265 126 4 808 239 364 8 69 chr9 29343991 29344121 -94732051 - L2b LINE L2 -10 3377 3226 4 808 262 321 105 70 chr9 29344405 29344424 -94731748 + B4A SINE B4 76 182 -110 4 808 518 256 93 50 chr9 29344424 29344507 -94731665 + B1F SINE Alu 3 95 -54 4 808 1951 169 121 30 chr9 29344507 29344880 -94731292 + MTB_Mm LTR MaLR 1 407 0 4 808 262 321 105 70 chr9 29344880 29344891 -94731281 + B4A SINE B4 183 193 -99 4 808 518 256 93 50 chr9 29344891 29344936 -94731236 + B1F SINE Alu 96 148 -1 4 808 1757 69 5 0 chr9 29346118 29346335 -94729837 + L1_Mus1 LINE L1 6350 6567 0 4 808 269 282 138 103 chr9 29346999 29347173 -94728999 + LTR50 LTR ERVL 21 200 -595 4 808 221 289 87 8 chr9 29348147 29348248 -94727924 - MIRb SINE MIR -51 217 107 4 808 240 400 30 0 chr9 29349691 29349826 -94726346 + MIRb SINE MIR 91 229 -39 4 808 2544 208 35 28 chr9 29350817 29351420 -94724752 + MYSERV-int LTR ERVK 5942 6548 -2 4 808 2051 122 68 6 chr9 29351421 29351758 -94724414 + RLTR15 LTR ERVK 1 358 -1 4 808 23 0 0 0 chr9 29352058 29352081 -94724091 + AT_rich Low_complexity Low_complexity 1 23 0 4 808 245 356 27 14 chr9 29352095 29352243 -94723929 + L1ME3A LINE L1 5971 6120 -53 4 808 1183 164 124 0 chr9 29353524 29353725 -94722447 + URR1A DNA MER1_type 1 226 0 4 808 370 252 38 101 chr9 29353826 29353985 -94722187 + B4A SINE B4 3 151 -141 4 808 211 281 18 0 chr9 29354045 29354102 -94722070 + CT-rich Low_complexity Low_complexity 2 59 0 4 808 245 274 0 0 chr9 29354110 29354161 -94722011 - ID4_ SINE ID -16 67 17 4 808 212 323 0 75 chr9 29355007 29355074 -94721098 - B1F SINE Alu -57 92 31 4 808 1015 294 36 7 chr9 29355222 29355439 -94720733 + B4A SINE B4 1 219 -73 4 808 183 80 0 0 chr9 29355439 29355464 -94720708 + (TAA)n Simple_repeat Simple_repeat 2 26 0 4 808 1015 294 36 7 chr9 29355464 29355524 -94720648 + B4A SINE B4 220 285 -7 4 808 372 43 0 0 chr9 29355530 29355576 -94720596 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 808 203 169 16 33 chr9 29355691 29355752 -94720420 + (TTA)n Simple_repeat Simple_repeat 2 61 0 4 808 312 27 0 0 chr9 29357299 29357336 -94718836 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 808 474 248 82 9 chr9 29357493 29357603 -94718569 + RSINE1 SINE B4 30 147 -18 4 808 261 282 51 0 chr9 29358084 29358162 -94718010 + ID4_ SINE ID 1 82 -1 4 808 582 317 134 17 chr9 29358172 29358470 -94717702 + L4 LINE RTE 1017 1349 -680 4 808 261 0 0 0 chr9 29359033 29359062 -94717110 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 4 808 579 330 48 26 chr9 29359345 29359572 -94716600 + MER2 DNA MER2_type 10 241 -104 4 808 736 306 11 6 chr9 29359605 29359786 -94716386 + Tigger5 DNA MER2_type 56 237 -2169 4 808 861 272 17 0 chr9 29359777 29360012 -94716160 + Tigger5 DNA MER2_type 2168 2406 0 4 12 839 325 59 16 chr9 29360026 29360401 -94715771 - L1ME1 LINE L1 -284 5895 5505 4 809 436 255 29 0 chr9 29360717 29360819 -94715353 - B1F1 SINE Alu -5 144 40 4 809 1276 276 41 19 chr9 29360820 29361186 -94714986 + MTEa LTR MaLR 4 377 -2 4 809 1240 275 82 16 chr9 29361219 29361607 -94714565 - MTD LTR MaLR 0 419 6 4 809 1448 299 93 30 chr9 29361865 29363190 -94712982 - L1ME1 LINE L1 -1559 4587 3227 4 809 528 16 0 0 chr9 29364387 29364448 -94711724 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 809 222 368 15 0 chr9 29364450 29364518 -94711654 - ID SINE ID -154 70 2 4 809 402 245 62 26 chr9 29364529 29364642 -94711530 - B1F1 SINE Alu -20 129 13 4 809 275 295 92 8 chr9 29365078 29365208 -94710964 + L2 LINE L2 2354 2494 -925 4 809 754 168 0 0 chr9 29365424 29365549 -94710623 - B1_Mur1 SINE Alu 0 149 25 4 809 526 308 198 86 chr9 29366335 29366896 -94709276 - MLT1E1A LTR MaLR -29 651 1 4 809 1760 241 9 76 chr9 29366930 29367375 -94708797 - MTD LTR MaLR -1 418 4 4 809 180 0 0 0 chr9 29368207 29368227 -94707945 + (T)n Simple_repeat Simple_repeat 1 20 0 4 809 581 265 30 0 chr9 29368902 29369034 -94707138 + B1F SINE Alu 7 142 -7 4 809 843 279 80 22 chr9 29369122 29369229 -94706943 - MER2 DNA MER2_type -15 330 217 4 809 225 0 0 0 chr9 29369229 29369254 -94706918 + (CAT)n Simple_repeat Simple_repeat 1 25 0 4 809 843 279 80 22 chr9 29369254 29369458 -94706714 - MER2 DNA MER2_type -129 216 1 4 809 369 0 0 0 chr9 29369592 29369633 -94706539 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 809 373 401 71 29 chr9 29369733 29369972 -94706200 + MLT1J2 LTR MaLR 200 448 0 4 809 23 0 0 0 chr9 29370001 29370024 -94706148 + AT_rich Low_complexity Low_complexity 1 23 0 4 809 1349 329 85 10 chr9 29370033 29370548 -94705624 + MLT1J2-int LTR MaLR 49 602 -785 4 809 345 100 0 0 chr9 29371131 29371181 -94704991 + (TCTCCC)n Simple_repeat Simple_repeat 3 52 0 4 809 191 36 0 35 chr9 29372520 29372549 -94703623 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 4 809 3405 78 21 55 chr9 29373332 29373808 -94702364 - L1_Mus2 LINE L1 0 6566 6107 4 809 282 216 109 17 chr9 29373892 29374008 -94702164 + MLT1J2 LTR MaLR 237 406 -2 4 809 225 228 88 0 chr9 29374478 29374535 -94701637 + PB1D7 SINE Alu 57 118 -2 4 809 268 352 38 9 chr9 29374693 29374799 -94701373 - B3 SINE B2 0 216 108 4 809 180 0 0 0 chr9 29376005 29376025 -94700147 + (ATG)n Simple_repeat Simple_repeat 1 20 0 4 809 3413 149 79 5 chr9 29377705 29378398 -94697774 - Lx2 LINE L1 -18 6990 6150 4 809 194 0 39 0 chr9 29378564 29378590 -94697582 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 809 858 298 96 36 chr9 29378862 29379497 -94696675 - L1MA5 LINE L1 -473 5827 5091 4 809 262 313 19 83 chr9 29379656 29379764 -94696408 - MLT1A LTR MaLR -248 126 26 4 809 315 0 0 0 chr9 29380434 29380469 -94695703 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 809 182 374 70 56 chr9 29381355 29381570 -94694602 - L2 LINE L2 -457 2962 2745 4 809 307 291 54 18 chr9 29382092 29382204 -94693968 - MIRb SINE MIR -132 136 21 4 809 180 259 0 33 chr9 29382371 29382431 -94693741 - L3 LINE CR1 -2078 2411 2354 4 809 183 184 13 38 chr9 29382554 29382633 -94693539 + (TTA)n Simple_repeat Simple_repeat 2 78 0 4 809 21 0 0 0 chr9 29382863 29382884 -94693288 + AT_rich Low_complexity Low_complexity 1 21 0 4 809 231 61 0 0 chr9 29384552 29384585 -94691587 + (A)n Simple_repeat Simple_repeat 1 33 0 4 809 1746 16 16 0 chr9 29384673 29384863 -94691309 - B2_Mm1a SINE B2 0 193 1 4 809 283 310 184 9 chr9 29385024 29385138 -94691034 + ID_B1 SINE B4 21 154 -70 4 809 351 314 56 35 chr9 29385147 29385289 -94690883 - MLT1A LTR MaLR -222 152 8 4 809 273 359 0 11 chr9 29389607 29389700 -94686472 + B4A SINE B4 13 104 -188 4 809 366 306 43 37 chr9 29390226 29390413 -94685759 + MER53 DNA hAT 5 192 -1 4 809 863 318 85 29 chr9 29390665 29391281 -94684891 - L1ME2 LINE L1 -50 6114 5463 4 809 690 122 0 0 chr9 29393309 29393416 -94682756 + (GGGA)n Simple_repeat Simple_repeat 3 109 0 4 809 208 280 16 26 chr9 29394229 29394313 -94681859 - L2b LINE L2 -270 3117 3033 4 809 756 269 43 27 chr9 29394466 29394722 -94681450 + B4A SINE B4 32 291 -1 4 809 192 77 0 0 chr9 29395038 29395064 -94681108 + (TGGGGG)n Simple_repeat Simple_repeat 1 26 0 4 809 405 0 0 0 chr9 29395743 29395788 -94680384 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 809 450 0 0 0 chr9 29396745 29396795 -94679377 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 809 203 270 142 8 chr9 29398156 29398283 -94677889 - MIRc SINE MIR -26 242 99 5 809 1659 224 30 15 chr9 29399175 29399574 -94676598 - MTD LTR MaLR -14 405 1 5 809 276 53 0 0 chr9 29400622 29400660 -94675512 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 5 809 387 60 0 0 chr9 29401252 29401302 -94674870 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 809 234 288 85 39 chr9 29401567 29401697 -94674475 - MIR SINE MIR -64 198 63 5 809 224 267 83 0 chr9 29404152 29404212 -94671960 + MIR SINE MIR 85 149 -59 5 809 309 263 40 20 chr9 29404381 29404482 -94671690 - ORR1E LTR MaLR 0 359 257 5 809 241 238 69 0 chr9 29405057 29405144 -94671028 - B3A SINE B2 -57 141 38 5 809 192 217 0 0 chr9 29406264 29406310 -94669862 + GA-rich Low_complexity Low_complexity 3 48 0 5 809 442 213 92 9 chr9 29406424 29406533 -94669639 - PB1D9 SINE Alu -2 118 1 5 809 252 293 51 8 chr9 29406876 29406993 -94669179 + L1M5 LINE L1 5700 5821 -303 5 809 1008 228 45 105 chr9 29407577 29407892 -94668280 + ORR1B2 LTR MaLR 9 312 -55 5 809 2852 36 0 0 chr9 29407892 29408229 -94667943 + L1Md_A LINE L1 6244 6580 -2 5 809 1008 228 45 105 chr9 29408229 29408295 -94667877 + ORR1B2 LTR MaLR 313 367 0 5 809 315 331 20 20 chr9 29408686 29408837 -94667335 - MIR SINE MIR -42 220 70 5 809 613 244 156 30 chr9 29408841 29409078 -94667094 + B4A SINE B4 2 267 -25 5 809 195 129 0 0 chr9 29409106 29409137 -94667035 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 809 275 49 24 0 chr9 29410123 29410164 -94666008 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5 809 356 277 67 67 chr9 29410631 29410809 -94665363 - B3A SINE B2 0 198 21 5 809 492 282 16 0 chr9 29410860 29410984 -94665188 + RSINE1 SINE B4 5 130 -35 5 809 267 54 0 0 chr9 29411006 29411043 -94665129 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 809 760 329 66 54 chr9 29411244 29411734 -94664438 + L1MB7 LINE L1 5362 5902 -282 5 809 252 0 0 0 chr9 29411734 29411762 -94664410 + (CATAT)n Simple_repeat Simple_repeat 2 29 0 5 809 760 329 40 60 chr9 29411762 29411927 -94664245 + L1MB7 LINE L1 5903 6059 -125 5 809 536 42 14 0 chr9 29412552 29412623 -94663549 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 809 628 216 12 18 chr9 29412631 29412780 -94663392 + ORR1B2 LTR MaLR 205 342 -32 5 809 302 301 40 16 chr9 29412970 29413095 -94663077 - L1M2 LINE L1 -478 5822 5695 5 809 1333 309 58 34 chr9 29413124 29413974 -94662198 - L1M2 LINE L1 -362 5518 4662 5 809 229 360 8 51 chr9 29414674 29414791 -94661381 - MIR SINE MIR -142 120 9 5 809 637 194 54 0 chr9 29415174 29415303 -94660869 + MTD LTR MaLR 282 417 -2 5 809 269 360 140 64 chr9 29415720 29416206 -94659966 + LTR85c LTR Gypsy? 1 523 -300 5 809 1074 306 111 18 chr9 29416706 29417258 -94658914 - L1MA6 LINE L1 -2 6298 5696 5 809 326 325 0 32 chr9 29417519 29417643 -94658529 + ID_B1 SINE B4 98 217 -7 5 809 217 319 103 34 chr9 29420327 29420444 -94655728 + MIRm SINE MIR 36 160 -116 5 809 254 371 25 35 chr9 29420992 29421193 -94654979 - MIRb SINE MIR -42 226 28 5 809 21 0 0 0 chr9 29421206 29421227 -94654945 + AT_rich Low_complexity Low_complexity 1 21 0 5 809 249 280 25 17 chr9 29421246 29421366 -94654806 - MIRb SINE MIR -46 222 102 5 809 294 364 23 23 chr9 29421941 29422118 -94654054 - MIR SINE MIR -75 187 11 5 809 2811 290 50 38 chr9 29422520 29423571 -94652601 + Lx8 LINE L1 6408 7471 -2 5 809 686 273 106 43 chr9 29424711 29425180 -94650992 + L1MEc LINE L1 168 723 -5677 5 809 1138 303 54 46 chr9 29425158 29425857 -94650315 + L1MEc LINE L1 3649 4353 -1966 5 809 1155 289 109 19 chr9 29425894 29426317 -94649855 + Lx8 LINE L1 7008 7468 -5 5 809 3005 238 72 79 chr9 29426470 29427454 -94648718 + Lx9 LINE L1 6485 7435 -209 5 809 348 24 0 0 chr9 29427454 29427495 -94648677 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 809 3005 238 72 79 chr9 29427495 29427667 -94648505 + Lx9 LINE L1 7436 7633 -11 5 809 1488 298 79 43 chr9 29427710 29428390 -94647782 + L1MEc LINE L1 4578 5293 -1026 5 809 986 62 77 0 chr9 29428390 29428520 -94647652 + B1_Mus1 SINE Alu 1 140 -8 5 809 257 0 30 0 chr9 29428520 29428553 -94647619 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 809 1488 298 79 43 chr9 29428553 29428715 -94647457 + L1MEc LINE L1 5294 5451 -868 5 809 248 226 215 9 chr9 29429100 29429141 -94647031 + ORR1D-int LTR MaLR 1215 1259 -111 5 809 204 40 0 0 chr9 29429141 29429166 -94647006 + (TTGTG)n Simple_repeat Simple_repeat 1 25 0 5 809 248 226 215 9 chr9 29429166 29429231 -94646941 + ORR1D-int LTR MaLR 1260 1342 -28 5 809 331 304 145 6 chr9 29429399 29429571 -94646601 + L1_Mur3 LINE L1 2521 2716 -3164 5 809 3148 252 31 11 chr9 29429685 29430520 -94645652 - Lx9 LINE L1 -2 7642 6791 5 809 914 301 86 40 chr9 29430506 29431347 -94644825 + L1M2 LINE L1 2737 3615 -2528 5 809 2385 197 25 56 chr9 29431354 29431925 -94644247 - RLTR31_Mur LTR ERVK 0 553 1 5 809 22 0 0 0 chr9 29432031 29432053 -94644119 + AT_rich Low_complexity Low_complexity 1 22 0 5 809 306 0 0 0 chr9 29432054 29432088 -94644084 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 809 365 270 10 20 chr9 29432131 29432233 -94643939 - B3 SINE B2 -115 101 1 5 809 320 332 78 7 chr9 29432533 29432803 -94643369 + L1M2 LINE L1 4254 4542 -1601 5 809 1186 296 64 12 chr9 29432823 29433339 -94642833 + L1M2 LINE L1 4716 5258 -885 5 809 714 335 13 4 chr9 29433328 29433662 -94642510 - L1M2 LINE L1 -1311 4832 4464 5 809 378 294 24 0 chr9 29433670 29433796 -94642376 + L1MEc LINE L1 5713 5841 -511 5 809 593 210 339 6 chr9 29433992 29434160 -94642012 - URR1A DNA MER1_type -1 225 2 5 809 257 35 0 95 chr9 29434478 29434541 -94641631 + (TTTTG)n Simple_repeat Simple_repeat 3 59 0 5 809 419 145 26 0 chr9 29434550 29434626 -94641546 - PB1D9 SINE Alu 0 120 43 5 809 364 302 0 52 chr9 29435320 29435456 -94640716 + GA-rich Low_complexity Low_complexity 5 133 0 5 809 215 302 11 11 chr9 29435499 29435586 -94640586 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 5 809 266 364 65 0 chr9 29435994 29436148 -94640024 - MER5A DNA MER1_type -25 164 1 5 809 190 356 101 39 chr9 29436472 29436908 -94639264 + L2a LINE L2 2942 3404 -22 5 809 581 287 84 0 chr9 29436988 29437190 -94638982 - MER2 DNA MER2_type -41 304 86 5 809 353 261 199 38 chr9 29437779 29438066 -94638106 - L1M3c LINE L1 -1825 5275 4943 5 809 24 0 0 0 chr9 29438221 29438245 -94637927 + AT_rich Low_complexity Low_complexity 1 24 0 5 809 553 299 68 42 chr9 29438245 29438625 -94637547 + L1MA7 LINE L1 5664 6053 -238 5 809 180 0 0 0 chr9 29438706 29438726 -94637446 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 809 440 240 0 10 chr9 29438729 29438826 -94637346 - PB1D9 SINE Alu -24 96 1 5 809 242 320 0 48 chr9 29438732 29438837 -94637335 - ID_B1 SINE B4 -53 171 72 5 809 1257 278 168 17 chr9 29439025 29439801 -94636371 - L1M3c LINE L1 -3181 3919 3018 5 809 370 271 10 0 chr9 29440118 29440214 -94635958 - L1M3c LINE L1 -4619 2489 2393 5 809 510 331 51 47 chr9 29440237 29440312 -94635860 - L1M3c LINE L1 -4827 2281 2210 5 809 615 27 0 0 chr9 29440312 29440385 -94635787 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 809 795 292 59 39 chr9 29440385 29440975 -94635197 - L1M3c LINE L1 -4532 2505 1637 5 809 384 278 43 0 chr9 29440976 29441091 -94635081 - B1F1 SINE Alu -28 121 2 5 809 218 294 58 12 chr9 29441015 29441101 -94635071 - B4A SINE B4 -125 167 78 5 809 269 291 48 64 chr9 29441101 29441288 -94634884 - L1M3c LINE L1 -5015 2015 1832 5 809 503 330 146 0 chr9 29441308 29441547 -94634625 + B4A SINE B4 1 274 -18 5 809 721 226 22 38 chr9 29442025 29442209 -94633963 - L1M3c LINE L1 -6847 183 3 5 809 207 0 0 0 chr9 29442720 29442743 -94633429 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 5 809 308 288 131 20 chr9 29442919 29443086 -94633086 + MIRb SINE MIR 45 226 -42 5 809 908 289 26 93 chr9 29443996 29444309 -94631863 + B4 SINE B4 1 292 0 5 809 619 296 14 104 chr9 29444351 29444589 -94631583 + B3A SINE B2 1 215 -1 5 809 282 325 89 0 chr9 29444591 29444714 -94631458 - MIR SINE MIR -69 193 60 5 809 228 291 49 25 chr9 29445023 29445104 -94631068 + MIR SINE MIR 180 262 0 5 809 212 340 97 0 chr9 29445157 29445301 -94630871 - L2 LINE L2 -1015 2404 2247 5 809 265 253 0 96 chr9 29445679 29445762 -94630410 - ID4 SINE ID -7 76 2 5 809 590 256 0 43 chr9 29446267 29446406 -94629766 + B1F SINE Alu 16 148 -1 5 809 286 286 12 59 chr9 29447366 29447508 -94628664 + MIR SINE MIR 129 265 -3 5 809 280 241 69 46 chr9 29448074 29448161 -94628011 - ORR1E LTR MaLR 0 379 291 5 809 267 276 18 0 chr9 29448300 29448379 -94627793 - B1F SINE Alu 0 149 67 5 809 289 356 38 9 chr9 29448381 29448486 -94627686 - ORR1E LTR MaLR -250 109 2 5 809 376 340 129 5 chr9 29451157 29451341 -94624831 + MER2 DNA MER2_type 8 214 -131 5 809 1110 175 0 0 chr9 29451341 29451524 -94624648 - URR1A DNA MER1_type 0 226 44 5 809 307 270 65 65 chr9 29451536 29451643 -94624529 + MER2 DNA MER2_type 233 339 -6 5 809 192 311 152 24 chr9 29451757 29451882 -94624290 + L2 LINE L2 2820 2960 -459 5 809 524 80 17 50 chr9 29454004 29454123 -94622049 + (TCTCTG)n Simple_repeat Simple_repeat 6 120 0 5 809 225 0 0 0 chr9 29454118 29454143 -94622029 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 809 207 229 0 0 chr9 29454798 29454859 -94621313 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 809 548 228 0 11 chr9 29454899 29455081 -94621091 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 809 248 195 28 66 chr9 29456625 29456703 -94619469 + MIR SINE MIR 94 178 -98 5 809 207 100 0 0 chr9 29458317 29458347 -94617825 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 5 809 201 74 0 0 chr9 29462221 29462248 -94613924 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 809 225 0 0 0 chr9 29462248 29462273 -94613899 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 809 204 250 14 14 chr9 29463221 29463290 -94612882 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 5 809 222 37 0 0 chr9 29464130 29464157 -94612015 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 5 809 342 0 0 0 chr9 29464829 29464867 -94611305 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 5 809 242 269 0 37 chr9 29466027 29466108 -94610064 - MIRc SINE MIR -3 265 188 5 809 242 287 46 0 chr9 29466429 29466516 -94609656 + L1MC4 LINE L1 7558 7648 -394 5 809 612 27 0 0 chr9 29467242 29467316 -94608856 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 809 770 191 44 0 chr9 29467627 29467763 -94608409 - B1_Mur1 SINE Alu -5 144 3 5 809 197 256 0 0 chr9 29468724 29468763 -94607409 - MIR3 SINE MIR -53 155 117 6 809 423 0 0 0 chr9 29468774 29468821 -94607351 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 809 747 0 0 0 chr9 29469018 29469101 -94607071 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 809 306 206 0 0 chr9 29469128 29469201 -94606971 + GA-rich Low_complexity Low_complexity 2 74 0 6 809 180 0 0 0 chr9 29469998 29470018 -94606154 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 6 809 273 162 0 0 chr9 29472137 29472205 -94603967 + T-rich Low_complexity Low_complexity 1 68 0 6 809 300 167 0 0 chr9 29473226 29473298 -94602874 + CT-rich Low_complexity Low_complexity 2 73 0 6 809 443 227 204 149 chr9 29473303 29473572 -94602600 - B4 SINE B4 0 292 9 6 809 248 0 0 30 chr9 29473660 29473693 -94602479 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 6 809 198 0 0 0 chr9 29475295 29475317 -94600855 + (A)n Simple_repeat Simple_repeat 1 22 0 6 809 535 288 72 0 chr9 29476290 29476443 -94599729 + ID_B1 SINE B4 9 172 -52 6 809 3465 28 2 0 chr9 29476495 29476890 -94599282 + MTA_Mm LTR MaLR 1 396 0 6 809 269 312 153 87 chr9 29477133 29477319 -94598853 - MLT1B LTR MaLR -4 386 177 6 809 561 286 5 53 chr9 29477319 29477526 -94598646 - B3A SINE B2 -1 197 1 6 809 269 312 153 87 chr9 29477526 29477686 -94598486 - MLT1B LTR MaLR -214 176 17 6 809 288 0 0 0 chr9 29478628 29478660 -94597512 + (TAA)n Simple_repeat Simple_repeat 2 33 0 6 809 23 0 0 0 chr9 29480754 29480777 -94595395 + AT_rich Low_complexity Low_complexity 1 23 0 6 809 225 180 0 0 chr9 29482694 29482744 -94593428 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 6 809 326 242 137 0 chr9 29484901 29484996 -94591176 - MER46C DNA MER2_type -229 109 2 6 809 207 0 0 0 chr9 29485347 29485370 -94590802 + (T)n Simple_repeat Simple_repeat 1 23 0 6 809 204 355 75 44 chr9 29489792 29489951 -94586221 - MIRb SINE MIR -68 200 37 6 809 223 239 0 0 chr9 29491022 29491068 -94585104 + (TGG)n Simple_repeat Simple_repeat 1 46 0 6 101 505 270 0 18 chr9 29491173 29491286 -94584886 - PB1 SINE Alu -5 122 12 6 810 1229 131 81 19 chr9 29491831 29491858 -94584314 + URR1B DNA MER1_type 1 43 -182 6 810 396 0 0 0 chr9 29491858 29491902 -94584270 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 810 309 26 0 0 chr9 29491902 29491939 -94584233 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 810 1229 131 81 19 chr9 29491939 29492121 -94584051 + URR1B DNA MER1_type 44 223 -2 6 810 726 265 71 0 chr9 29493279 29493475 -94582697 + B3 SINE B2 1 210 -6 6 810 548 272 15 7 chr9 29493714 29493851 -94582321 + ID_B1 SINE B4 84 221 -3 6 810 299 250 55 18 chr9 29495756 29495866 -94580306 + ORR1D1 LTR MaLR 257 370 -4 6 810 573 309 0 14 chr9 29495859 29496000 -94580172 - MER58A DNA MER1_type -85 139 1 6 810 279 0 0 0 chr9 29496473 29496504 -94579668 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 810 228 279 9 71 chr9 29496935 29497047 -94579125 + Charlie2b DNA MER1_type 1082 1186 -1596 6 810 192 77 0 0 chr9 29497615 29497641 -94578531 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 810 1122 90 0 7 chr9 29497641 29497780 -94578392 - B1_Mus1 SINE Alu -8 140 2 6 810 704 221 48 0 chr9 29498347 29498492 -94577680 + RSINE1 SINE B4 3 154 -11 6 810 393 22 0 0 chr9 29498494 29498540 -94577632 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 6 810 181 211 58 0 chr9 29498643 29498695 -94577477 + MIRm SINE MIR 169 223 -53 6 810 966 86 0 0 chr9 29500284 29500423 -94575749 + B1_Mus2 SINE Alu 3 141 -6 1 810 258 32 0 0 chr9 29500425 29500456 -94575716 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 810 378 42 0 0 chr9 29500590 29500638 -94575534 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 810 387 0 0 0 chr9 29500638 29500680 -94575492 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 810 234 0 0 0 chr9 29502215 29502241 -94573931 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 810 223 238 0 0 chr9 29503463 29503526 -94572646 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 6 810 503 294 33 87 chr9 29503528 29503597 -94572575 - Lx9 LINE L1 -172 7472 7404 7 810 459 0 0 0 chr9 29503597 29503648 -94572524 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 8 810 1183 61 0 0 chr9 29503658 29503805 -94572367 - B1_Mm SINE Alu 0 147 1 9 810 503 294 33 87 chr9 29503805 29504000 -94572172 - Lx9 LINE L1 -244 7400 7212 7 810 265 250 130 0 chr9 29504218 29504310 -94571862 - ID_B1 SINE B4 -118 106 3 1 810 453 272 80 50 chr9 29504327 29504528 -94571644 - B3A SINE B2 -8 208 2 1 810 841 133 0 59 chr9 29504594 29504746 -94571426 - B1_Mus1 SINE Alu 0 148 6 1 810 408 40 0 0 chr9 29505558 29505608 -94570564 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 810 353 354 17 52 chr9 29506870 29507043 -94569129 - B4A SINE B4 -123 169 3 1 810 189 383 86 0 chr9 29507151 29507279 -94568893 - MIRb SINE MIR -107 161 23 1 810 338 70 35 0 chr9 29507282 29507339 -94568833 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 1 810 22 0 0 0 chr9 29507560 29507582 -94568590 + AT_rich Low_complexity Low_complexity 1 22 0 1 810 501 47 0 0 chr9 29508180 29508244 -94567928 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 810 378 0 0 0 chr9 29509691 29509733 -94566439 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 810 1058 124 23 0 chr9 29509756 29509933 -94566239 - L1_Mus3 LINE L1 -4 6634 6454 2 810 462 65 0 0 chr9 29510603 29510665 -94565507 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 810 1206 83 4 0 chr9 29513715 29514234 -94561938 + (TG)n Simple_repeat Simple_repeat 1 521 0 2 810 1269 83 0 0 chr9 29514252 29514432 -94561740 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 810 267 203 0 0 chr9 29514755 29514814 -94561358 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2 810 642 217 0 0 chr9 29515184 29515299 -94560873 + B1_Mur4 SINE Alu 30 144 -6 2 810 1200 111 0 0 chr9 29515321 29515501 -94560671 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 810 227 304 0 0 chr9 29515933 29515989 -94560183 + GA-rich Low_complexity Low_complexity 2 57 0 2 810 232 287 46 0 chr9 29518138 29518225 -94557947 - MIRc SINE MIR -132 136 46 2 810 244 338 107 7 chr9 29519366 29519506 -94556666 - LTR88a LTR Gypsy -411 405 252 2 810 182 37 0 36 chr9 29519675 29519703 -94556469 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 810 475 287 72 36 chr9 29520047 29520242 -94555930 - L2a LINE L2 0 3426 3225 3 810 259 311 29 0 chr9 29520265 29520368 -94555804 - L2a LINE L2 -293 3133 3028 3 810 253 176 13 39 chr9 29520675 29520752 -94555420 + A-rich Low_complexity Low_complexity 4 78 0 3 810 561 92 10 20 chr9 29520754 29520854 -94555318 + (GGA)n Simple_repeat Simple_repeat 2 100 0 3 810 207 0 0 0 chr9 29520931 29520954 -94555218 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 810 649 361 7 54 chr9 29520976 29521231 -94554941 - B4A SINE B4 -8 284 41 3 810 2150 166 73 15 chr9 29521231 29521629 -94554543 - MTC LTR MaLR 0 421 1 3 810 649 361 7 54 chr9 29521629 29521669 -94554503 - B4A SINE B4 -252 40 3 3 810 405 0 0 0 chr9 29524431 29524476 -94551696 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 810 260 224 0 29 chr9 29524823 29524892 -94551280 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 3 810 2213 100 6 59 chr9 29524967 29525307 -94550865 + ORR1A2 LTR MaLR 5 326 -1 3 810 1622 214 79 16 chr9 29526074 29526454 -94549718 - MTD LTR MaLR -15 404 1 3 810 781 289 110 39 chr9 29527242 29527605 -94548567 - MTD LTR MaLR 0 419 31 4 810 3032 67 13 8 chr9 29528171 29528565 -94547607 + MTA_Mm LTR MaLR 1 396 0 4 810 276 268 154 43 chr9 29529791 29529908 -94546264 + B1F SINE Alu 13 142 -7 4 810 439 163 0 60 chr9 29530000 29530117 -94546055 + ORR1A2 LTR MaLR 1 111 -235 4 810 1731 94 75 7 chr9 29530126 29530406 -94545766 + ORR1A2 LTR MaLR 29 327 0 4 810 392 302 121 36 chr9 29530413 29530636 -94545536 - MLT1F LTR MaLR -29 519 278 4 810 582 330 38 40 chr9 29530654 29531013 -94545159 + ORR1E LTR MaLR 1 376 -3 4 810 346 258 133 44 chr9 29531027 29531185 -94544987 - MLT1F LTR MaLR -343 205 34 4 810 246 136 0 0 chr9 29533000 29533044 -94543128 + (T)n Simple_repeat Simple_repeat 1 44 0 4 810 353 309 39 39 chr9 29536068 29536223 -94539949 + RSINE1 SINE B4 11 165 0 4 810 1032 292 69 96 chr9 29536734 29537769 -94538403 + L1MB7 LINE L1 4284 5299 -847 4 810 393 267 8 49 chr9 29537769 29537891 -94538281 + PB1D10 SINE Alu 1 117 0 5 810 1032 292 69 96 chr9 29537891 29537905 -94538267 + L1MB7 LINE L1 5300 5308 -838 4 810 273 29 0 0 chr9 29537905 29537939 -94538233 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 5 810 1032 292 69 96 chr9 29537939 29537989 -94538183 + L1MB7 LINE L1 5309 5354 -792 4 810 412 275 95 56 chr9 29538162 29538393 -94537779 + L1MB7 LINE L1 5756 5995 -189 4 810 1228 222 125 17 chr9 29538426 29538787 -94537385 + MTD LTR MaLR 6 405 -14 5 810 324 0 0 0 chr9 29539045 29539081 -94537091 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 810 465 281 263 0 chr9 29539114 29539342 -94536830 - B4A SINE B4 -4 288 1 5 810 567 241 25 46 chr9 29539921 29540117 -94536055 + B3A SINE B2 1 192 -6 5 810 220 293 12 62 chr9 29541689 29541769 -94534403 + L2b LINE L2 3082 3157 -218 5 810 194 119 83 17 chr9 29543081 29543141 -94533031 + GA-rich Low_complexity Low_complexity 4 67 0 5 810 534 31 0 0 chr9 29544397 29544461 -94531711 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 810 290 239 40 42 chr9 29545131 29545142 -94531030 + B1_Mus1 SINE Alu 1 28 -89 5 810 290 271 14 0 chr9 29545142 29545212 -94530960 + ID_B1 SINE B4 88 158 -66 6 810 290 239 40 42 chr9 29545212 29545241 -94530931 + B1_Mus1 SINE Alu 29 111 -6 5 810 324 231 106 49 chr9 29545506 29545629 -94530543 + MTD LTR MaLR 239 368 -51 6 810 329 221 11 115 chr9 29547370 29547416 -94528756 + PB1D10 SINE Alu 32 78 -39 6 810 3277 26 39 0 chr9 29547416 29547797 -94528375 - MTA_Mm LTR MaLR 0 396 1 6 810 9329 31 3 2 chr9 29547799 29548894 -94527278 - MTA_Mm-int LTR MaLR -2 1096 1 6 810 3274 21 42 0 chr9 29548894 29549274 -94526898 - MTA_Mm LTR MaLR 0 396 1 6 810 329 221 11 115 chr9 29549274 29549310 -94526862 + PB1D10 SINE Alu 79 108 -9 6 810 234 254 45 30 chr9 29550083 29550217 -94525955 + (TA)n Simple_repeat Simple_repeat 2 137 0 6 810 275 306 65 16 chr9 29551152 29551275 -94524897 + MIR SINE MIR 105 233 -29 6 810 2200 92 69 0 chr9 29551509 29551815 -94524357 + ORR1A2 LTR MaLR 1 327 0 6 810 2672 129 11 24 chr9 29551815 29552275 -94523897 + ORR1A2-int LTR MaLR 1 454 -1509 6 810 3256 15 0 0 chr9 29552276 29552672 -94523500 - MTA_Mm LTR MaLR 0 396 1 6 810 7518 136 63 4 chr9 29552672 29554101 -94522071 + ORR1A2-int LTR MaLR 451 1963 0 6 810 2058 117 6 0 chr9 29554101 29554418 -94521754 + ORR1A2 LTR MaLR 1 319 -8 6 810 222 362 43 0 chr9 29554467 29554561 -94521611 + B1F1 SINE Alu 12 109 -40 6 810 779 267 61 87 chr9 29554816 29555194 -94520978 - MTE2a LTR MaLR -1 378 11 6 810 359 296 120 14 chr9 29556277 29556493 -94519679 - MLT1F LTR MaLR -10 538 300 7 810 1154 272 102 32 chr9 29556704 29557167 -94519005 + RMER5 LTR ERV1 33 527 -7 7 810 553 308 47 0 chr9 29559451 29559620 -94516552 - B3A SINE B2 -18 180 4 7 810 357 287 53 7 chr9 29559621 29559772 -94516400 + Tigger7 DNA MER2_type 2296 2453 -38 7 810 23 0 0 0 chr9 29560236 29560259 -94515913 + AT_rich Low_complexity Low_complexity 1 23 0 7 810 324 0 0 0 chr9 29560961 29560997 -94515175 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 810 405 0 0 0 chr9 29560997 29561041 -94515131 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 810 1152 276 38 12 chr9 29561198 29561543 -94514629 + MTD LTR MaLR 66 419 0 7 810 494 43 0 14 chr9 29561814 29561884 -94514288 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 810 189 118 19 38 chr9 29561931 29561984 -94514188 + A-rich Low_complexity Low_complexity 4 55 0 7 810 675 0 0 0 chr9 29562784 29562859 -94513313 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 8 810 207 0 0 0 chr9 29563691 29563714 -94512458 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 8 810 342 362 22 28 chr9 29565090 29565269 -94510903 - MIR SINE MIR -78 184 7 8 810 228 348 70 46 chr9 29565482 29565723 -94510449 - L3 LINE CR1 -707 3782 3536 8 810 194 327 125 0 chr9 29565868 29565972 -94510200 - L3 LINE CR1 -1127 3362 3246 8 810 428 0 19 0 chr9 29568043 29568095 -94508077 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 810 315 0 0 0 chr9 29570410 29570445 -94505727 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 8 810 309 316 7 0 chr9 29570446 29570562 -94505610 - PB1D10 SINE Alu -21 128 10 8 810 396 304 72 28 chr9 29571974 29572224 -94503948 + L1MB8 LINE L1 5812 6072 -106 8 810 245 75 25 0 chr9 29572544 29572584 -94503588 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 8 810 302 212 18 124 chr9 29573007 29573120 -94503052 + MIRc SINE MIR 50 150 -118 8 810 350 254 60 17 chr9 29573524 29573672 -94502500 - L1MA8 LINE L1 -275 6016 5858 9 810 672 99 0 0 chr9 29574534 29574645 -94501527 + (GA)n Simple_repeat Simple_repeat 2 112 0 9 810 302 347 0 45 chr9 29575466 29575620 -94500552 + RSINE1 SINE B4 15 161 -4 9 810 279 360 6 0 chr9 29576160 29576321 -94499851 + (TG)n Simple_repeat Simple_repeat 2 163 0 9 810 421 337 28 33 chr9 29576556 29576768 -94499404 + B4A SINE B4 1 211 -81 9 810 270 0 0 0 chr9 29576918 29576948 -94499224 + (A)n Simple_repeat Simple_repeat 1 30 0 9 810 325 317 40 63 chr9 29576948 29577123 -94499049 + MLT1A LTR MaLR 155 325 -49 9 810 22 0 0 0 chr9 29578017 29578039 -94498133 + AT_rich Low_complexity Low_complexity 1 22 0 9 810 425 257 0 42 chr9 29578190 29578332 -94497840 - MIRb SINE MIR -93 175 40 9 810 193 323 16 0 chr9 29579897 29579959 -94496213 + MIR3 SINE MIR 116 178 -30 9 810 1405 195 144 100 chr9 29582337 29582809 -94493363 + MT2A LTR ERVL 1 493 -40 1 810 22 0 0 0 chr9 29582841 29582863 -94493309 + AT_rich Low_complexity Low_complexity 1 22 0 1 810 243 108 0 0 chr9 29582904 29582941 -94493231 + MT2A LTR ERVL 497 533 0 1 810 263 140 20 0 chr9 29583052 29583102 -94493070 + RMER15 LTR ERVL 1 51 -524 1 810 253 308 57 9 chr9 29583299 29583404 -94492768 + RMER15 LTR ERVL 423 532 -43 1 810 477 342 63 52 chr9 29585590 29585858 -94490314 - Tigger5 DNA MER2_type 0 2406 2136 1 810 216 159 45 0 chr9 29586203 29586247 -94489925 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 1 810 189 171 0 0 chr9 29586249 29586284 -94489888 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 810 281 318 2 0 chr9 29586352 29586454 -94489718 - ID4_ SINE ID -49 103 1 1 810 232 314 19 10 chr9 29586911 29587014 -94489158 - MIR SINE MIR -124 138 35 1 810 1488 226 103 93 chr9 29588799 29589306 -94486866 + RLTR18B LTR ERVK 1 512 0 1 810 500 309 69 93 chr9 29590338 29590702 -94485470 + ORR1E LTR MaLR 1 355 -4 1 810 258 156 0 0 chr9 29590918 29590982 -94485190 + GA-rich Low_complexity Low_complexity 2 65 0 1 810 342 0 0 0 chr9 29590985 29591023 -94485149 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 810 393 285 40 0 chr9 29591085 29591236 -94484936 - L1ME3B LINE L1 -375 5865 5709 1 810 231 243 57 0 chr9 29591620 29591690 -94484482 + MER103 DNA DNA 39 112 -54 1 810 584 50 12 0 chr9 29591690 29591770 -94484402 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 810 425 133 13 0 chr9 29594843 29594918 -94481254 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 810 2605 128 71 46 chr9 29595297 29595732 -94480440 + RLTR41 LTR ERV1 1 446 0 1 810 249 289 24 12 chr9 29596142 29596226 -94479946 - RMER5 LTR ERV1 -223 311 227 1 810 467 267 95 15 chr9 29596935 29597072 -94479100 + ID_B1 SINE B4 5 152 -72 1 810 243 146 0 0 chr9 29597225 29597266 -94478906 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 1 810 235 243 100 0 chr9 29598050 29598120 -94478052 - MurSatRep1 Unknown Unknown -1869 268 192 1 810 696 216 79 93 chr9 29603081 29603372 -94472800 - L1MA7 LINE L1 -10 6281 5995 1 810 818 329 20 57 chr9 29603718 29604015 -94472157 - B4A SINE B4 -6 286 1 1 810 765 33 0 0 chr9 29604702 29604794 -94471378 + (GA)n Simple_repeat Simple_repeat 2 93 0 1 810 272 234 15 15 chr9 29605260 29605325 -94470847 + ID4_ SINE ID 8 72 -11 1 810 359 211 117 13 chr9 29605889 29606043 -94470129 + L1ME2z LINE L1 6275 6444 0 1 810 2920 292 146 42 chr9 29606355 29606575 -94469597 - MTEa-int LTR MaLR -2 1578 1349 1 810 740 277 5 32 chr9 29606575 29606795 -94469377 + B3 SINE B2 2 215 -1 1 810 2920 292 146 42 chr9 29606795 29607997 -94468175 - MTEa-int LTR MaLR -232 1348 8 1 810 842 259 95 105 chr9 29608007 29608387 -94467785 - MTEa LTR MaLR -3 376 1 1 810 181 258 48 16 chr9 29608893 29608956 -94467216 - L2a LINE L2 -3 3423 3359 1 810 1443 88 0 5 chr9 29609203 29609398 -94466774 + B2_Mm2 SINE B2 1 194 -1 1 810 243 267 66 11 chr9 29609688 29609779 -94466393 + MIRm SINE MIR 164 259 -17 1 810 1118 274 135 34 chr9 29611999 29612795 -94463377 + L1MB5 LINE L1 5280 6171 0 1 810 440 257 97 0 chr9 29613037 29613150 -94463022 + RSINE1 SINE B4 9 132 -33 1 810 535 81 0 23 chr9 29613162 29613250 -94462922 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 810 207 0 0 0 chr9 29613483 29613506 -94462666 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 810 294 316 40 73 chr9 29613524 29613674 -94462498 - B3 SINE B2 -19 197 53 1 810 411 21 0 0 chr9 29613676 29613724 -94462448 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 810 457 240 229 23 chr9 29616031 29616206 -94459966 - B3 SINE B2 -5 211 1 1 810 212 277 20 74 chr9 29616979 29617127 -94459045 + MIR SINE MIR 65 204 -58 1 810 245 98 0 24 chr9 29617152 29617194 -94458978 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 810 325 328 30 8 chr9 29617232 29617364 -94458808 + MLT1A0 LTR MaLR 15 149 -216 1 810 235 313 122 15 chr9 29619344 29619512 -94456660 + MIRc SINE MIR 1 187 -81 1 810 398 306 127 0 chr9 29619735 29619892 -94456280 - MIRb SINE MIR -91 177 1 1 810 234 0 0 0 chr9 29620263 29620289 -94455883 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 810 468 373 13 26 chr9 29620454 29620688 -94455484 + LTR16A LTR ERVL 205 435 -16 1 810 1516 230 96 5 chr9 29620802 29621186 -94454986 - MTD LTR MaLR 0 419 1 1 810 393 39 0 0 chr9 29621200 29621251 -94454921 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 810 308 359 16 0 chr9 29621354 29621482 -94454690 + MLT1H1 LTR MaLR 1 130 -425 1 810 426 143 0 0 chr9 29621633 29621724 -94454448 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 810 258 397 13 20 chr9 29621743 29621892 -94454280 + MLT1H1 LTR MaLR 339 486 -69 1 811 210 71 0 0 chr9 29622359 29622387 -94453785 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 1 811 405 308 52 29 chr9 29622574 29622748 -94453424 - MER5B DNA MER1_type 0 178 1 1 811 365 298 106 20 chr9 29622749 29622948 -94453224 - L3b LINE CR1 -218 264 49 1 811 348 268 14 0 chr9 29624189 29624260 -94451912 - ID4_ SINE ID -11 72 1 1 811 541 335 56 20 chr9 29624835 29625033 -94451139 + ID_B1 SINE B4 4 208 -16 1 811 426 85 0 0 chr9 29625036 29625095 -94451077 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 1 811 551 244 0 0 chr9 29625680 29625811 -94450361 - MamRep1161 DNA TcMar -808 149 19 1 811 180 284 176 0 chr9 29625979 29626081 -94450091 + L2c LINE L2 3267 3386 -1 1 811 250 295 18 5 chr9 29626085 29626196 -94449976 + MIRc SINE MIR 150 267 -1 1 811 316 284 36 29 chr9 29627503 29627641 -94448531 + MIRc SINE MIR 87 225 -43 1 811 189 0 0 0 chr9 29629686 29629707 -94446465 + (T)n Simple_repeat Simple_repeat 1 21 0 1 811 183 80 0 0 chr9 29629896 29629921 -94446251 + (T)n Simple_repeat Simple_repeat 1 25 0 1 811 849 309 57 10 chr9 29632366 29632667 -94443505 - Lx8 LINE L1 -265 7208 6894 1 811 182 289 31 72 chr9 29633357 29633454 -94442718 + MIRb SINE MIR 80 172 -96 1 811 198 167 0 0 chr9 29634890 29634926 -94441246 + CT-rich Low_complexity Low_complexity 2 37 0 1 811 1506 205 94 27 chr9 29635502 29635873 -94440299 + MTD LTR MaLR 24 419 0 1 811 254 214 18 0 chr9 29635905 29635961 -94440211 - MIR SINE MIR -77 131 75 1 811 441 0 0 0 chr9 29636002 29636051 -94440121 + (T)n Simple_repeat Simple_repeat 1 49 0 1 811 190 330 17 78 chr9 29636181 29636296 -94439876 + MIRc SINE MIR 44 151 -117 1 811 344 284 25 17 chr9 29636325 29636443 -94439729 - MER5A1 DNA MER1_type -35 131 13 1 811 186 292 29 68 chr9 29637594 29637697 -94438475 - L2b LINE L2 -14 3361 3263 1 811 300 247 0 0 chr9 29637980 29638065 -94438107 + CT-rich Low_complexity Low_complexity 3 87 0 1 811 1067 80 11 22 chr9 29638065 29638244 -94437928 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1 811 920 121 0 6 chr9 29638381 29638555 -94437617 + (TCC)n Simple_repeat Simple_repeat 1 173 0 1 811 221 347 76 43 chr9 29638822 29639033 -94437139 + MIR SINE MIR 37 254 -8 1 811 286 22 0 61 chr9 29639092 29639141 -94437031 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 811 297 151 0 0 chr9 29639742 29639795 -94436377 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 811 201 246 15 76 chr9 29640999 29641065 -94435107 - MIRb SINE MIR -87 181 120 1 811 396 0 0 0 chr9 29641499 29641543 -94434629 + (GCTG)n Simple_repeat Simple_repeat 1 44 0 1 811 414 0 0 0 chr9 29642023 29642069 -94434103 + (A)n Simple_repeat Simple_repeat 1 46 0 1 811 207 0 0 0 chr9 29643028 29643051 -94433121 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1 811 285 154 0 0 chr9 29644425 29644477 -94431695 + Lx8 LINE L1 7420 7471 -2 1 811 389 347 99 21 chr9 29644977 29645210 -94430962 + MIRc SINE MIR 6 256 -12 1 811 222 37 0 0 chr9 29645588 29645615 -94430557 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 811 22 0 0 0 chr9 29645663 29645685 -94430487 + AT_rich Low_complexity Low_complexity 1 22 0 1 811 410 243 55 41 chr9 29646050 29646196 -94429976 + B4A SINE B4 124 271 -21 1 811 369 0 0 0 chr9 29646198 29646239 -94429933 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 811 705 266 119 30 chr9 29646315 29646725 -94429447 - Arthur1 DNA Tip100 -68 3879 3422 1 811 551 385 49 6 chr9 29646723 29647047 -94429125 - Arthur1 DNA Tip100 -3389 558 221 1 811 236 359 20 35 chr9 29647255 29647454 -94428718 + MLT1H2 LTR MaLR 285 480 -9 1 811 371 308 182 28 chr9 29647716 29648068 -94428104 + MLT1H2-int LTR MaLR 247 652 -757 1 811 1903 188 19 13 chr9 29648096 29648333 -94427839 + RLTR14 LTR ERV1 4 241 -141 1 811 336 48 0 0 chr9 29648333 29648375 -94427797 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 811 1903 188 19 13 chr9 29648375 29648514 -94427658 + RLTR14 LTR ERV1 242 381 -1 1 811 1221 106 0 0 chr9 29648966 29649146 -94427026 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 811 1230 88 32 32 chr9 29649530 29649717 -94426455 - B2_Mm2 SINE B2 -7 188 2 1 811 1568 38 0 5 chr9 29650608 29650793 -94425379 - B2_Mm1a SINE B2 -9 184 1 1 811 25 0 0 0 chr9 29650954 29650979 -94425193 + AT_rich Low_complexity Low_complexity 1 25 0 1 811 265 355 29 22 chr9 29651075 29651242 -94424930 + MIRb SINE MIR 8 179 -89 1 811 201 154 0 0 chr9 29652332 29652371 -94423801 + (CAT)n Simple_repeat Simple_repeat 3 41 0 1 811 395 295 43 0 chr9 29652484 29652623 -94423549 - MIRb SINE MIR -68 200 56 1 811 918 115 0 0 chr9 29652636 29652801 -94423371 + (GA)n Simple_repeat Simple_repeat 2 166 0 1 811 400 287 30 0 chr9 29653398 29653499 -94422673 - PB1D10 SINE Alu -6 111 8 1 811 745 212 228 6 chr9 29653649 29653820 -94422352 - B3 SINE B2 -6 210 2 2 811 797 262 14 10 chr9 29653827 29654035 -94422137 - B3 SINE B2 -4 212 4 2 811 287 241 56 22 chr9 29656298 29656387 -94419785 - PB1D7 SINE Alu -5 115 24 2 811 353 285 105 13 chr9 29657078 29657231 -94418941 + AmnSINE1 SINE SINE 224 390 -185 2 811 526 279 91 14 chr9 29659377 29659653 -94416519 - MER96B DNA hAT -120 297 1 2 811 292 311 46 20 chr9 29659879 29660030 -94416142 - MLT1A1 LTR MaLR 0 408 254 2 811 352 285 47 60 chr9 29660557 29660717 -94415455 + L2c LINE L2 3202 3387 0 2 811 1145 281 18 44 chr9 29662168 29662552 -94413620 - MTEa LTR MaLR -3 376 3 2 811 213 39 0 0 chr9 29664021 29664047 -94412125 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 811 408 88 0 0 chr9 29666362 29666419 -94409753 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 811 417 20 0 0 chr9 29666419 29666469 -94409703 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 811 296 297 8 75 chr9 29667430 29667550 -94408622 + MTEb LTR MaLR 4 115 -264 2 811 318 265 12 0 chr9 29667728 29667811 -94408361 + MTEb LTR MaLR 296 379 0 2 811 222 37 0 0 chr9 29668167 29668194 -94407978 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2 811 734 171 55 42 chr9 29669352 29669517 -94406655 - URR1B DNA MER1_type 0 225 59 2 811 278 326 0 10 chr9 29671188 29671284 -94404888 + CT-rich Low_complexity Low_complexity 2 96 0 2 811 26 0 0 0 chr9 29671379 29671405 -94404767 + AT_rich Low_complexity Low_complexity 1 26 0 2 811 306 0 0 0 chr9 29671448 29671482 -94404690 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 811 892 166 198 11 chr9 29671593 29671770 -94404402 + B3 SINE B2 1 210 -6 2 811 378 0 0 0 chr9 29672235 29672277 -94403895 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 811 435 130 0 0 chr9 29673577 29673654 -94402518 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 811 309 68 0 0 chr9 29674196 29674240 -94401932 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 811 438 20 0 0 chr9 29675344 29675395 -94400777 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 811 234 0 0 0 chr9 29675399 29675425 -94400747 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 811 192 97 0 0 chr9 29676128 29676159 -94400013 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 811 414 366 65 5 chr9 29676175 29676392 -94399780 + B4A SINE B4 4 233 -59 2 811 261 0 0 0 chr9 29676429 29676458 -94399714 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 811 222 37 0 0 chr9 29676831 29676858 -94399314 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 811 425 304 139 64 chr9 29676917 29677093 -94399079 - L1MA9 LINE L1 -6 6306 6105 2 811 628 237 106 20 chr9 29677093 29677256 -94398916 + B3 SINE B2 2 176 -40 2 811 464 32 16 0 chr9 29677256 29677318 -94398854 + (CATA)n Simple_repeat Simple_repeat 4 66 0 2 811 628 237 106 20 chr9 29677318 29677352 -94398820 + B3 SINE B2 177 216 0 2 811 425 304 139 64 chr9 29677352 29677534 -94398638 - L1MA9 LINE L1 -208 6104 5921 2 811 324 350 74 0 chr9 29678723 29678886 -94397286 - L3 LINE CR1 -791 3698 3524 2 811 628 228 58 17 chr9 29679613 29679787 -94396385 + MER5A DNA MER1_type 8 188 -1 2 811 366 349 49 25 chr9 29680313 29680598 -94395574 - MLT1A0 LTR MaLR -3 362 71 2 811 230 308 38 13 chr9 29683720 29683799 -94392373 + ID4_ SINE ID 2 82 -1 2 811 254 384 10 10 chr9 29683843 29683943 -94392229 + PB1D10 SINE Alu 10 109 -8 2 811 399 21 0 0 chr9 29683955 29684003 -94392169 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 811 257 303 0 0 chr9 29684032 29684108 -94392064 + MLT1A1 LTR MaLR 304 379 -29 2 811 460 316 123 24 chr9 29686826 29687037 -94389135 - B4A SINE B4 -18 274 43 2 811 522 0 0 0 chr9 29687173 29687231 -94388941 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 811 631 297 7 0 chr9 29687234 29687389 -94388783 - B3A SINE B2 -42 156 1 2 811 2210 146 110 6 chr9 29687804 29688319 -94387853 - RMER4B LTR ERVK -16 569 1 2 811 363 44 0 0 chr9 29688885 29688930 -94387242 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 811 372 104 0 0 chr9 29688930 29688997 -94387175 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 811 248 333 54 23 chr9 29689145 29689274 -94386898 + MIR3 SINE MIR 56 188 -20 2 811 966 18 0 0 chr9 29691304 29691416 -94384756 + (TC)n Simple_repeat Simple_repeat 1 112 0 2 811 207 69 0 0 chr9 29692295 29692324 -94383848 + (T)n Simple_repeat Simple_repeat 1 29 0 2 811 1999 313 16 19 chr9 29693175 29693866 -94382306 - Lx8 LINE L1 -385 7088 6400 2 811 297 89 0 0 chr9 29694541 29694586 -94381586 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 2 811 375 289 114 6 chr9 29694587 29694752 -94381420 - B4 SINE B4 -16 276 78 2 811 330 318 14 65 chr9 29695177 29695315 -94380857 - B4A SINE B4 -159 133 3 2 811 324 0 0 0 chr9 29696847 29696883 -94379289 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 811 7766 86 11 11 chr9 29696971 29697955 -94378217 + L1_Mus3 LINE L1 5387 6373 -265 2 811 333 0 0 0 chr9 29697955 29697992 -94378180 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 2 811 7766 81 13 11 chr9 29697992 29698151 -94378021 + L1_Mus3 LINE L1 6374 6534 -104 2 811 3703 23 87 0 chr9 29698151 29698588 -94377584 + IAPLTR2_Mm LTR ERVK 1 475 0 2 811 7766 81 13 11 chr9 29698588 29698684 -94377488 + L1_Mus3 LINE L1 6535 6630 -8 2 811 556 236 23 30 chr9 29698740 29698871 -94377301 - B3 SINE B2 -86 130 1 2 811 523 343 43 43 chr9 29698995 29699488 -94376684 - MLT1F2 LTR MaLR 0 560 33 2 811 183 80 0 0 chr9 29701548 29701573 -94374599 + (A)n Simple_repeat Simple_repeat 1 25 0 2 811 410 176 0 0 chr9 29701926 29701994 -94374178 + B1_Mur1 SINE Alu 74 141 -8 2 811 430 264 163 0 chr9 29702484 29702613 -94373559 + B3 SINE B2 56 205 -11 2 811 414 0 0 0 chr9 29702871 29702917 -94373255 + (TAA)n Simple_repeat Simple_repeat 3 48 0 2 811 233 333 43 26 chr9 29706290 29706407 -94369765 - L2c LINE L2 -24 3363 3245 2 811 780 314 43 43 chr9 29707126 29707572 -94368600 + Lx8 LINE L1 7024 7469 -4 2 811 810 313 74 50 chr9 29707644 29707923 -94368249 + Tigger7 DNA MER2_type 2156 2240 -251 2 811 1237 281 40 25 chr9 29707923 29708277 -94367895 + ORR1E LTR MaLR 1 359 0 2 811 810 252 62 55 chr9 29708277 29708498 -94367674 + Tigger7 DNA MER2_type 2241 2464 -27 2 811 541 335 18 0 chr9 29708501 29708671 -94367501 + B3A SINE B2 4 176 -22 2 811 245 325 48 44 chr9 29709404 29709610 -94366562 - L2c LINE L2 -968 2451 2245 2 811 380 304 130 73 chr9 29710231 29710571 -94365601 + ORR1E LTR MaLR 6 368 -6 2 811 342 0 0 0 chr9 29711385 29711423 -94364749 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 811 867 70 0 0 chr9 29711423 29711550 -94364622 + (GA)n Simple_repeat Simple_repeat 1 128 0 2 811 306 277 127 13 chr9 29711942 29712092 -94364080 + MER110A LTR ERV1 58 224 -244 2 811 225 292 29 25 chr9 29712560 29712648 -94363524 - MIRc SINE MIR -86 190 94 2 811 182 277 107 19 chr9 29714858 29714961 -94361211 + MIR SINE MIR 17 128 -134 2 811 625 222 16 0 chr9 29715551 29715677 -94360495 - B1_Mur4 SINE Alu -20 130 3 2 811 813 284 53 26 chr9 29715753 29716093 -94360079 + MLT1B LTR MaLR 24 372 -18 2 811 551 290 145 58 chr9 29716825 29717184 -94358988 + RMER20A LTR ERVK 127 516 0 2 811 818 326 71 9 chr9 29719174 29719611 -94356561 - MLT1D LTR MaLR -9 496 30 2 811 216 330 59 20 chr9 29720528 29720630 -94355542 - MIR SINE MIR -152 116 11 2 811 205 279 0 102 chr9 29721753 29721841 -94354331 + MIR3 SINE MIR 128 206 -2 2 811 1586 222 113 50 chr9 29724899 29725010 -94351162 + RLTR20C LTR ERVK 1 114 -420 2 811 994 69 39 0 chr9 29725010 29725140 -94351032 + B1_Mus1 SINE Alu 2 136 -12 2 811 315 0 0 0 chr9 29725141 29725176 -94350996 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 811 1586 222 113 50 chr9 29725176 29725469 -94350703 + RLTR20C LTR ERVK 115 432 -102 2 811 447 19 0 0 chr9 29725469 29725521 -94350651 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 811 1586 222 113 50 chr9 29725521 29725615 -94350557 + RLTR20C LTR ERVK 433 533 -1 2 811 698 145 101 0 chr9 29725615 29725753 -94350419 + URR1A DNA MER1_type 75 226 0 2 811 399 41 0 0 chr9 29726432 29726481 -94349691 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2 811 261 0 0 0 chr9 29727396 29727425 -94348747 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 811 258 247 12 49 chr9 29727833 29727914 -94348258 + CT-rich Low_complexity Low_complexity 4 81 0 2 811 393 247 0 0 chr9 29728601 29728767 -94347405 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 811 573 42 0 0 chr9 29728883 29728955 -94347217 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 811 418 46 31 0 chr9 29731500 29731565 -94344607 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2 811 1217 218 46 131 chr9 29731588 29731766 -94344406 - Lx8 LINE L1 0 7473 7328 2 811 414 0 0 0 chr9 29731766 29731812 -94344360 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 811 1217 218 46 131 chr9 29731812 29732176 -94343996 - Lx8 LINE L1 -146 7327 6977 2 811 1254 120 16 0 chr9 29732195 29732379 -94343793 - B2_Mm2 SINE B2 -6 189 3 2 811 489 17 0 0 chr9 29733617 29733675 -94342497 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 811 1703 217 40 7 chr9 29734569 29734991 -94341181 - RCHARR1 DNA MER1_type -11 963 528 2 811 408 55 0 0 chr9 29734991 29735046 -94341126 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 811 1084 256 84 31 chr9 29735067 29735426 -94340746 - RCHARR1 DNA MER1_type -492 482 105 2 811 705 312 122 40 chr9 29736219 29736720 -94339452 - Kanga1 DNA Tc2 -1152 593 52 2 811 692 350 71 47 chr9 29736977 29737721 -94338451 - L2 LINE L2 -1243 2176 1415 2 811 995 165 8 0 chr9 29737832 29738081 -94338091 + CT-rich Low_complexity Low_complexity 1 251 0 2 811 939 18 0 0 chr9 29738081 29738190 -94337982 + (TTCCC)n Simple_repeat Simple_repeat 1 109 0 2 811 305 62 21 0 chr9 29738497 29738545 -94337627 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 2 811 189 365 61 0 chr9 29738725 29738873 -94337299 - L3b LINE CR1 -280 202 46 2 811 644 251 179 57 chr9 29740217 29740479 -94335693 - Lx8 LINE L1 -7 7466 7173 2 811 200 250 15 15 chr9 29740789 29740854 -94335318 + CT-rich Low_complexity Low_complexity 2 66 0 3 811 230 237 17 0 chr9 29740854 29740913 -94335259 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 811 493 321 73 25 chr9 29740913 29741188 -94334984 - B4A SINE B4 0 292 5 3 811 198 128 0 0 chr9 29741207 29741246 -94334926 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 3 811 276 266 35 17 chr9 29742571 29742686 -94333486 + Charlie23a DNA MER1_type 175 291 -48 3 811 455 286 60 13 chr9 29742873 29743107 -94333065 + L1ME4a LINE L1 5655 5899 -225 3 811 26 0 0 0 chr9 29744444 29744470 -94331702 + AT_rich Low_complexity Low_complexity 1 26 0 3 811 543 128 0 0 chr9 29745116 29745202 -94330970 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 811 868 116 0 16 chr9 29746774 29747037 -94329135 + (TG)n Simple_repeat Simple_repeat 1 258 0 3 811 972 53 8 0 chr9 29748087 29748219 -94327953 + B1_Mm SINE Alu 14 146 -1 3 811 607 124 8 23 chr9 29748219 29748351 -94327821 + (TAAA)n Simple_repeat Simple_repeat 1 130 0 3 811 783 32 0 0 chr9 29749562 29749656 -94326516 + (TTC)n Simple_repeat Simple_repeat 3 96 0 3 811 252 309 25 0 chr9 29750169 29750250 -94325922 + MIRb SINE MIR 156 238 -30 3 811 24 32 0 0 chr9 29752062 29752093 -94324079 + AT_rich Low_complexity Low_complexity 1 31 0 3 811 854 162 0 66 chr9 29752103 29752255 -94323917 - B1_Mus1 SINE Alu -6 142 1 3 811 182 262 113 16 chr9 29752888 29752950 -94323222 - MER5A DNA MER1_type 0 189 122 3 811 422 274 206 0 chr9 29753161 29753307 -94322865 - B3A SINE B2 -18 180 5 3 812 188 253 127 51 chr9 29753704 29753783 -94322389 - MIR SINE MIR -57 151 67 3 812 1028 311 104 23 chr9 29754304 29754932 -94321240 - L1MB4 LINE L1 -4 6176 5501 3 812 267 31 0 0 chr9 29755931 29755963 -94320209 + (TCC)n Simple_repeat Simple_repeat 2 33 0 3 812 618 292 11 33 chr9 29756112 29756296 -94319876 - B3A SINE B2 -14 184 5 3 812 714 67 0 0 chr9 29757066 29757171 -94319001 + (TC)n Simple_repeat Simple_repeat 1 105 0 3 812 201 39 0 0 chr9 29757171 29757196 -94318976 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 812 200 227 0 0 chr9 29757940 29757984 -94318188 + A-rich Low_complexity Low_complexity 1 44 0 3 812 1170 252 68 18 chr9 29759306 29759705 -94316467 + MTD LTR MaLR 1 419 0 3 812 201 316 20 39 chr9 29761240 29761342 -94314830 - MIR SINE MIR -55 207 108 3 812 190 256 47 35 chr9 29763889 29763974 -94312198 + L2a LINE L2 3340 3425 -1 3 812 387 60 0 0 chr9 29766518 29766568 -94309604 + (TTG)n Simple_repeat Simple_repeat 2 51 0 3 812 906 133 0 27 chr9 29766568 29766715 -94309457 - B1_Mur3 SINE Alu -2 147 5 3 812 195 129 0 0 chr9 29768832 29768863 -94307309 + (CATA)n Simple_repeat Simple_repeat 2 32 0 3 812 224 309 0 0 chr9 29770513 29770581 -94305591 + CT-rich Low_complexity Low_complexity 2 69 0 3 812 405 0 0 0 chr9 29770822 29770867 -94305305 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 812 314 123 18 0 chr9 29771633 29771690 -94304482 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 3 812 288 338 63 44 chr9 29772628 29772786 -94303386 - MIR SINE MIR -54 208 48 3 812 564 56 0 0 chr9 29773288 29773360 -94302812 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 812 1406 280 52 41 chr9 29773360 29773916 -94302256 - Lx9 LINE L1 -191 7453 6892 3 812 227 54 27 0 chr9 29774429 29774466 -94301706 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 812 243 0 0 0 chr9 29776059 29776086 -94300086 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 812 486 49 0 0 chr9 29776086 29776146 -94300026 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 812 490 285 140 0 chr9 29776205 29776405 -94299767 - B4 SINE B4 -64 228 1 3 812 22 0 0 0 chr9 29777550 29777572 -94298600 + AT_rich Low_complexity Low_complexity 1 22 0 3 812 468 0 0 0 chr9 29778134 29778186 -94297986 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 812 295 293 0 57 chr9 29778222 29778327 -94297845 - ID_B1 SINE B4 -31 193 95 3 812 312 236 10 15 chr9 29778262 29778336 -94297836 - PB1D10 SINE Alu -40 80 2 3 812 504 0 0 0 chr9 29778346 29778402 -94297770 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 812 251 342 0 13 chr9 29779498 29779575 -94296597 - LFSINE_Vert SINE SINE -2 457 382 3 812 569 220 17 17 chr9 29781810 29781986 -94294186 + CT-rich Low_complexity Low_complexity 2 177 0 3 812 1070 118 0 6 chr9 29782013 29782184 -94293988 + (TTCC)n Simple_repeat Simple_repeat 4 173 0 3 812 379 274 137 21 chr9 29782952 29783142 -94293030 + ID_B1 SINE B4 3 214 -10 3 812 1690 116 16 4 chr9 29783471 29783723 -94292449 - Lx LINE L1 -4 6650 6396 3 812 630 0 0 0 chr9 29783730 29783800 -94292372 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 812 1576 43 0 0 chr9 29784043 29784228 -94291944 + B2_Mm1a SINE B2 3 187 -6 3 812 726 96 0 0 chr9 29784436 29784540 -94291632 + (GAA)n Simple_repeat Simple_repeat 1 104 0 3 812 442 157 24 16 chr9 29785484 29785607 -94290565 + GA-rich Low_complexity Low_complexity 1 124 0 3 812 238 326 49 54 chr9 29785893 29786078 -94290094 + MamGypLTR1d LTR Gypsy 7 190 -623 3 812 238 213 49 0 chr9 29786349 29786410 -94289762 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 812 476 181 24 18 chr9 29786428 29786597 -94289575 + (TG)n Simple_repeat Simple_repeat 2 171 0 3 812 356 176 29 10 chr9 29790246 29790349 -94285823 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 812 187 400 41 0 chr9 29792000 29792145 -94284027 + L2c LINE L2 3179 3329 -58 3 812 383 267 12 0 chr9 29792213 29792374 -94283798 + (TATG)n Simple_repeat Simple_repeat 4 166 0 3 812 246 136 0 0 chr9 29792419 29792463 -94283709 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 812 247 284 42 84 chr9 29792836 29792955 -94283217 + MLT1J LTR MaLR 221 334 -178 3 812 460 186 196 90 chr9 29793042 29793231 -94282941 + ORR1D1 LTR MaLR 169 380 -4 3 812 1794 189 158 15 chr9 29793201 29793239 -94282933 - MT2A LTR ERVL -5 528 490 3 812 342 0 0 0 chr9 29793239 29793277 -94282895 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 812 1794 189 158 15 chr9 29793277 29793700 -94282472 - MT2A LTR ERVL -44 489 1 3 812 182 171 29 0 chr9 29794413 29794448 -94281724 - MIR SINE MIR -7 255 220 3 812 431 288 93 6 chr9 29794500 29794661 -94281511 - MIR SINE MIR -56 206 32 3 812 768 42 0 0 chr9 29795216 29795312 -94280860 + (TCCA)n Simple_repeat Simple_repeat 4 99 0 3 812 350 209 0 0 chr9 29795351 29795418 -94280754 - L2a LINE L2 -85 3341 3275 3 812 310 267 58 73 chr9 29795765 29795996 -94280176 - MLT1B LTR MaLR -21 446 152 3 812 679 254 61 5 chr9 29796020 29796218 -94279954 - B3 SINE B2 -6 210 2 3 812 315 246 54 0 chr9 29796385 29796552 -94279620 + (CACTG)n Simple_repeat Simple_repeat 4 179 0 3 812 743 272 190 13 chr9 29796888 29797204 -94278968 - MTD LTR MaLR -2 417 46 3 812 1415 229 24 35 chr9 29798203 29798574 -94277598 + ORR1D2 LTR MaLR 1 367 -3 3 812 222 314 28 64 chr9 29798824 29798933 -94277239 - L2a LINE L2 -56 3370 3266 3 812 278 279 54 64 chr9 29799008 29799163 -94277009 + Charlie24 DNA MER1_type 2330 2444 -6 3 812 21 0 0 0 chr9 29799428 29799449 -94276723 + AT_rich Low_complexity Low_complexity 1 21 0 3 812 420 111 0 0 chr9 29799449 29799512 -94276660 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 812 1410 265 50 71 chr9 29799522 29800086 -94276086 - Lx8 LINE L1 -21 7452 6901 3 812 420 302 7 35 chr9 29800655 29800799 -94275373 + Lx8 LINE L1 6937 7076 -397 3 812 1986 174 75 8 chr9 29800957 29801345 -94274827 - MTC LTR MaLR -1 420 7 3 812 233 283 17 0 chr9 29802272 29802332 -94273840 + Charlie14a DNA MER1_type 1 61 -1103 3 812 506 256 25 37 chr9 29802363 29802525 -94273647 + MER103 DNA DNA 3 162 -4 3 812 359 344 37 28 chr9 29802919 29803191 -94272981 - L2a LINE L2 -289 3137 2860 3 812 242 140 0 23 chr9 29803255 29803299 -94272873 + MLT1I LTR MaLR 1 43 -368 3 812 219 36 0 0 chr9 29804067 29804095 -94272077 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 3 812 326 322 89 17 chr9 29804411 29804591 -94271581 - L2a LINE L2 -654 2765 2573 3 812 700 276 0 0 chr9 29805461 29805631 -94270541 - ID_B1 SINE B4 -6 218 49 3 812 457 269 136 31 chr9 29806502 29806781 -94269391 - MTD LTR MaLR -15 406 92 3 812 534 16 0 0 chr9 29807585 29807648 -94268524 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 812 285 51 0 0 chr9 29809384 29809423 -94266749 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 812 207 100 0 0 chr9 29809810 29809840 -94266332 + (A)n Simple_repeat Simple_repeat 1 30 0 3 812 180 0 0 0 chr9 29810162 29810182 -94265990 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 812 1155 109 0 0 chr9 29811108 29811282 -94264890 + (GGAA)n Simple_repeat Simple_repeat 1 174 0 3 812 303 28 0 0 chr9 29811296 29811332 -94264840 + (CAG)n Simple_repeat Simple_repeat 1 36 0 3 812 182 322 64 11 chr9 29813088 29813182 -94262990 - MIRm SINE MIR -132 144 46 3 812 325 309 163 20 chr9 29813189 29813533 -94262639 - L2a LINE L2 -3 3423 3031 3 812 609 72 0 0 chr9 29814152 29814235 -94261937 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 812 1061 95 6 0 chr9 29814280 29814449 -94261723 + (GA)n Simple_repeat Simple_repeat 1 170 0 3 812 259 325 43 26 chr9 29814632 29814749 -94261423 - ORR1E LTR MaLR -213 146 28 3 812 782 224 156 0 chr9 29815553 29815758 -94260414 + Tigger5 DNA MER2_type 2157 2393 -13 3 812 417 39 0 0 chr9 29815768 29815819 -94260353 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 812 510 17 0 0 chr9 29815819 29815877 -94260295 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 812 262 202 158 11 chr9 29815936 29816031 -94260141 - MER34A LTR ERV1 -68 503 395 4 812 200 111 28 0 chr9 29817518 29817554 -94258618 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 812 432 0 0 0 chr9 29817711 29817759 -94258413 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 812 201 320 0 25 chr9 29817910 29817990 -94258182 + MIRb SINE MIR 182 259 -9 4 812 234 0 0 0 chr9 29819899 29819925 -94256247 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 4 812 438 94 0 0 chr9 29819973 29820037 -94256135 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 812 212 388 0 0 chr9 29820212 29820292 -94255880 - ID4 SINE ID 0 83 4 4 812 430 318 8 8 chr9 29820310 29820443 -94255729 - B1F SINE Alu -9 140 8 4 812 26 0 0 0 chr9 29821871 29821897 -94254275 + AT_rich Low_complexity Low_complexity 1 26 0 4 812 213 94 0 0 chr9 29822235 29822267 -94253905 + (T)n Simple_repeat Simple_repeat 1 32 0 4 812 345 262 12 0 chr9 29823045 29823125 -94253047 - RSINE1 SINE B4 -37 128 48 4 812 1768 152 8 83 chr9 29823128 29823607 -94252565 + RMER17C LTR ERVK 16 439 -519 4 812 270 0 0 0 chr9 29824030 29824060 -94252112 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 812 245 339 76 0 chr9 29824343 29824461 -94251711 + LTR16E1 LTR ERVL 412 538 0 4 812 585 0 0 0 chr9 29824643 29824708 -94251464 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 812 395 329 31 37 chr9 29824812 29824973 -94251199 - MLT1A1 LTR MaLR -248 160 1 4 812 726 12 0 0 chr9 29826263 29826346 -94249826 + (GA)n Simple_repeat Simple_repeat 1 83 0 4 812 3332 264 73 34 chr9 29827037 29828031 -94248141 + Lx7 LINE L1 6388 7420 -276 4 812 297 54 54 0 chr9 29828076 29828132 -94248040 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 812 410 306 109 0 chr9 29828253 29828436 -94247736 + L1MA4 LINE L1 5701 5903 -397 4 812 284 252 18 72 chr9 29828644 29828755 -94247417 + L1ME3 LINE L1 6051 6155 -7 4 812 217 163 0 23 chr9 29829367 29829411 -94246761 - MIR3 SINE MIR -14 194 152 4 812 967 183 78 50 chr9 29830688 29830907 -94245265 + URR1A DNA MER1_type 1 225 -1 4 812 225 154 0 0 chr9 29831058 29831097 -94245075 + (CACCAT)n Simple_repeat Simple_repeat 1 39 0 4 812 259 220 17 0 chr9 29831304 29831363 -94244809 + RMER15 LTR ERVL 394 453 -122 4 812 1386 221 108 5 chr9 29831375 29831554 -94244618 - BGLII_B LTR ERVK -10 431 242 4 812 531 0 0 0 chr9 29831554 29831613 -94244559 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 812 1386 221 108 5 chr9 29831613 29831811 -94244361 - BGLII_B LTR ERVK -200 241 15 4 812 207 0 0 0 chr9 29832796 29832819 -94243353 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 812 299 252 9 61 chr9 29833307 29833421 -94242751 - MLT1A1 LTR MaLR -5 403 296 4 812 273 146 0 0 chr9 29834266 29834314 -94241858 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 812 197 286 0 0 chr9 29835203 29835259 -94240913 - MIR SINE MIR -98 164 109 4 812 441 0 0 0 chr9 29835376 29835425 -94240747 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 812 6112 17 0 0 chr9 29835644 29836333 -94239839 + L1Md_T LINE L1 4898 5586 -297 4 812 9178 5 0 0 chr9 29836333 29837329 -94238843 + L1Md_T LINE L1 5587 6582 0 4 812 431 297 195 20 chr9 29839254 29839546 -94236626 + MER2 DNA MER2_type 1 343 -2 4 812 528 16 0 0 chr9 29841309 29841370 -94234802 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 812 673 285 72 65 chr9 29841377 29841670 -94234502 + Lx8 LINE L1 6197 6491 -982 4 812 217 132 0 0 chr9 29842369 29842407 -94233765 + (A)n Simple_repeat Simple_repeat 1 38 0 4 812 1143 139 124 0 chr9 29843074 29843275 -94232897 + URR1A DNA MER1_type 1 226 0 4 812 313 344 31 8 chr9 29843693 29843822 -94232350 + B4A SINE B4 6 137 -155 4 812 315 305 86 20 chr9 29844397 29844567 -94231605 - MIRb SINE MIR -5 257 73 4 812 328 256 129 14 chr9 29844828 29844967 -94231205 - MIRc SINE MIR -4 264 110 4 812 412 250 48 9 chr9 29845311 29845436 -94230736 + B1F SINE Alu 13 142 -7 4 812 489 115 0 0 chr9 29845535 29845613 -94230559 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 812 23 0 0 0 chr9 29846051 29846074 -94230098 + AT_rich Low_complexity Low_complexity 1 23 0 4 812 186 211 0 0 chr9 29846758 29846796 -94229376 - L2c LINE L2 -65 3322 3285 4 812 235 257 14 0 chr9 29847487 29847557 -94228615 + (TAA)n Simple_repeat Simple_repeat 2 72 0 4 812 275 336 28 14 chr9 29848464 29848609 -94227563 + MER5A1 DNA MER1_type 11 157 -9 4 812 693 36 0 0 chr9 29849042 29849126 -94227046 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 812 1059 248 8 26 chr9 29849141 29849406 -94226766 - Lx7 LINE L1 -360 7336 7077 4 812 432 0 0 0 chr9 29849429 29849477 -94226695 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 812 424 251 73 39 chr9 29849477 29849655 -94226517 + Lx7 LINE L1 7509 7692 -4 4 812 530 300 171 4 chr9 29849666 29849900 -94226272 + B4 SINE B4 2 274 -18 4 812 354 123 0 0 chr9 29849977 29850034 -94226138 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 4 812 1371 214 57 7 chr9 29850982 29851278 -94224894 + Lx9 LINE L1 6591 6901 -743 4 812 439 199 861 14 chr9 29851278 29851485 -94224687 - ORR1D1 LTR MaLR 0 384 1 4 812 3069 187 10 9 chr9 29851505 29852187 -94223985 + Lx9 LINE L1 6917 7638 -6 4 812 850 231 9 42 chr9 29853006 29853218 -94222954 + B3 SINE B2 12 216 0 4 812 1068 124 0 0 chr9 29853476 29853645 -94222527 + (TC)n Simple_repeat Simple_repeat 1 169 0 4 812 294 281 0 0 chr9 29853794 29853876 -94222296 + B2_Mm2 SINE B2 1 82 -113 4 812 429 20 0 0 chr9 29853955 29854005 -94222167 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 812 520 306 8 1 chr9 29854014 29854178 -94221994 - B3A SINE B2 -46 170 6 4 812 473 329 111 61 chr9 29854206 29855355 -94220817 + L1ME3A LINE L1 3931 5137 -1009 4 812 927 99 28 7 chr9 29855357 29855499 -94220673 + B1_Mm SINE Alu 3 147 0 4 812 394 321 75 11 chr9 29855513 29855699 -94220473 + L1ME3A LINE L1 5105 5302 -844 4 812 465 294 150 27 chr9 29855836 29856210 -94219962 + L1ME3A LINE L1 5477 5896 -277 4 812 331 291 48 76 chr9 29856220 29856365 -94219807 + MTEa LTR MaLR 1 141 -238 4 812 386 252 142 43 chr9 29856476 29856708 -94219464 + MT2A LTR ERVL 279 533 0 4 812 35653 63 4 3 chr9 29856799 29862980 -94213192 - L1Md_F2 LINE L1 -2 6580 392 4 812 2464 43 24 9 chr9 29863069 29863399 -94212773 + ORR1A1 LTR MaLR 1 335 -11 4 812 3504 30 0 0 chr9 29863399 29863795 -94212377 - MTA_Mm LTR MaLR 0 396 1 4 812 212 240 0 20 chr9 29863826 29863877 -94212295 + CT-rich Low_complexity Low_complexity 3 52 0 4 812 188 35 35 0 chr9 29863894 29863923 -94212249 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 812 503 98 11 0 chr9 29863924 29864016 -94212156 + (CA)n Simple_repeat Simple_repeat 2 94 0 4 812 285 29 0 0 chr9 29864382 29864416 -94211756 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 812 516 284 156 47 chr9 29864633 29865120 -94211052 - L1MA4A LINE L1 -15 6285 5746 4 812 268 111 0 0 chr9 29866094 29866139 -94210033 - ORR1B2 LTR MaLR 0 367 323 4 812 197 344 68 15 chr9 29866467 29866600 -94209572 + MIR3 SINE MIR 19 158 -50 4 812 409 143 0 35 chr9 29868776 29868863 -94207309 + GA-rich Low_complexity Low_complexity 1 84 0 4 812 617 304 41 56 chr9 29868903 29869287 -94206885 - MLT2B4 LTR ERVL -131 389 1 4 812 421 204 114 53 chr9 29870209 29870323 -94205849 - ORR1D2 LTR MaLR 0 370 250 4 812 186 43 0 0 chr9 29870323 29870346 -94205826 + (CAG)n Simple_repeat Simple_repeat 2 24 0 4 812 276 30 0 0 chr9 29870405 29870438 -94205734 + (TTA)n Simple_repeat Simple_repeat 2 34 0 4 812 4386 35 8 0 chr9 29871306 29871819 -94204353 + L1Md_F2 LINE L1 6066 6582 0 4 812 653 235 117 0 chr9 29871982 29872178 -94203994 - ORR1D2 LTR MaLR -150 220 2 4 812 3610 53 0 4 chr9 29876860 29877311 -94198861 - L1Md_F2 LINE L1 -1 6581 6133 4 812 275 213 13 0 chr9 29877799 29877874 -94198298 + CT-rich Low_complexity Low_complexity 1 76 0 4 812 582 15 0 0 chr9 29878082 29878149 -94198023 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 812 512 172 20 7 chr9 29878568 29878714 -94197458 + (CA)n Simple_repeat Simple_repeat 1 148 0 4 812 217 271 109 47 chr9 29878720 29878848 -94197324 + L2b LINE L2 3240 3375 0 4 812 2375 274 70 52 chr9 29878985 29880190 -94195982 + Charlie1a DNA MER1_type 11 1237 -218 4 812 632 289 117 19 chr9 29880702 29880967 -94195205 + B4A SINE B4 2 292 0 4 812 401 0 0 20 chr9 29880977 29881027 -94195145 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 812 258 330 43 0 chr9 29881726 29881820 -94194352 + L2a LINE L2 3323 3420 -6 4 812 336 234 102 9 chr9 29882127 29882235 -94193937 - MLT1A1 LTR MaLR 0 408 291 4 812 288 370 55 55 chr9 29882262 29882462 -94193710 - MLT1A1 LTR MaLR -204 204 5 4 812 303 276 51 0 chr9 29883107 29883205 -94192967 - MER3 DNA MER1_type -9 200 98 4 812 249 219 24 110 chr9 29883286 29883368 -94192804 + MER5A1 DNA MER1_type 20 94 -72 4 813 992 319 92 16 chr9 29885181 29885733 -94190439 + MamRep1161 DNA TcMar 26 619 -338 4 813 266 73 24 0 chr9 29885866 29885907 -94190265 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 4 813 747 87 0 0 chr9 29886604 29886708 -94189464 + (TC)n Simple_repeat Simple_repeat 1 104 0 4 813 350 268 9 35 chr9 29887741 29887857 -94188315 + MLT1A0 LTR MaLR 1 113 -252 4 813 285 29 0 0 chr9 29888046 29888080 -94188092 + (TCC)n Simple_repeat Simple_repeat 1 34 0 4 813 1464 263 74 91 chr9 29888897 29889073 -94187099 + Lx8 LINE L1 6830 7023 -450 4 813 555 16 0 0 chr9 29889073 29889137 -94187035 + (TAG)n Simple_repeat Simple_repeat 2 65 0 4 813 1464 258 77 92 chr9 29889137 29889591 -94186581 + Lx8 LINE L1 7024 7471 -2 4 813 207 0 0 0 chr9 29890211 29890234 -94185938 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 5 813 265 261 31 89 chr9 29890430 29890643 -94185529 + MER112 DNA MER1_type 5 192 -69 5 813 247 222 111 0 chr9 29891409 29891463 -94184709 + ID4 SINE ID 18 77 -6 5 813 256 200 120 0 chr9 29891415 29891465 -94184707 + ID SINE ID 25 80 -144 5 813 843 131 0 0 chr9 29891466 29891603 -94184569 + (GA)n Simple_repeat Simple_repeat 1 137 0 5 813 819 152 0 0 chr9 29891597 29891742 -94184430 + GA-rich Low_complexity Low_complexity 4 148 0 5 813 245 387 9 19 chr9 29892095 29892203 -94183969 - MIRb SINE MIR -125 143 37 5 813 207 396 66 71 chr9 29892664 29893101 -94183071 + L3 LINE CR1 3029 3463 -1026 5 813 225 108 0 0 chr9 29893999 29894036 -94182136 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 813 289 319 41 41 chr9 29895258 29895379 -94180793 + MTEb LTR MaLR 1 121 -238 5 813 324 238 11 35 chr9 29895412 29895499 -94180673 + MTEb LTR MaLR 282 366 -13 5 813 224 143 24 0 chr9 29896248 29896290 -94179882 + A-rich Low_complexity Low_complexity 3 45 0 5 813 250 346 56 67 chr9 29897099 29897294 -94178878 - MIR SINE MIR -10 252 60 5 813 297 309 113 35 chr9 29897386 29897527 -94178645 - MLT1A1 LTR MaLR -1 407 256 5 813 243 348 54 66 chr9 29897573 29897739 -94178433 - MLT1A1 LTR MaLR -244 164 1 5 813 1685 234 25 30 chr9 29898869 29899301 -94176871 + Lx7 LINE L1 35 464 -7264 5 813 15166 170 57 95 chr9 29899300 29901214 -94174958 + Lx7 LINE L1 1963 3883 -1997 5 813 359 96 20 15 chr9 29901214 29901281 -94174891 - B1_Mus1 SINE Alu -70 80 13 5 813 15166 170 57 95 chr9 29901281 29901512 -94174660 + Lx7 LINE L1 3884 4116 -1764 5 813 265 0 75 0 chr9 29901512 29901552 -94174620 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 813 15166 170 57 95 chr9 29901552 29901670 -94174502 + Lx7 LINE L1 4117 4221 -1659 5 813 305 24 24 0 chr9 29901670 29901712 -94174460 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 5 813 15166 170 57 95 chr9 29901712 29902113 -94174059 + Lx7 LINE L1 4222 4626 -1254 5 813 297 0 0 0 chr9 29902113 29902146 -94174026 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 813 15166 196 85 63 chr9 29902146 29904834 -94171338 + Lx7 LINE L1 4627 7360 -336 5 813 258 32 0 0 chr9 29904834 29904865 -94171307 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 813 3442 238 45 46 chr9 29904865 29905228 -94170944 + Lx7 LINE L1 7100 7652 -44 5 813 251 0 0 56 chr9 29905429 29905465 -94170707 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 813 433 273 19 45 chr9 29905562 29905719 -94170453 + RSINE1 SINE B4 2 154 -11 5 813 300 259 54 27 chr9 29906581 29906692 -94169480 - MIRb SINE MIR -38 230 117 5 813 310 62 48 48 chr9 29906894 29906978 -94169194 + A-rich Low_complexity Low_complexity 3 86 0 5 813 206 362 31 23 chr9 29907154 29907284 -94168888 + MIRb SINE MIR 98 228 -40 5 813 315 0 0 0 chr9 29907807 29907842 -94168330 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 813 368 55 18 0 chr9 29908887 29908942 -94167230 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 813 258 116 0 0 chr9 29909371 29909414 -94166758 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 813 258 32 0 0 chr9 29909619 29909650 -94166522 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 813 1658 201 54 71 chr9 29910702 29911126 -94165046 - MTD LTR MaLR 0 419 3 5 813 220 130 0 53 chr9 29911375 29911410 -94164762 + A-rich Low_complexity Low_complexity 2 36 0 5 813 3278 41 0 5 chr9 29911410 29911777 -94164395 + RLTR10B2 LTR ERVK 1 365 0 5 813 220 130 0 53 chr9 29911777 29911798 -94164374 + A-rich Low_complexity Low_complexity 37 55 0 5 813 583 291 54 124 chr9 29911845 29912104 -94164068 + B4 SINE B4 50 290 -2 5 813 420 20 0 0 chr9 29912161 29912210 -94163962 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 813 216 214 0 0 chr9 29912424 29912480 -94163692 + GA-rich Low_complexity Low_complexity 2 57 0 5 813 232 258 19 19 chr9 29912517 29912675 -94163497 + G-rich Low_complexity Low_complexity 5 162 0 5 813 226 391 33 0 chr9 29915222 29915314 -94160858 + MER117 DNA MER1_type 77 171 -26 5 813 241 328 171 48 chr9 29915456 29915725 -94160447 + MLT1H LTR MaLR 98 399 -150 5 813 538 302 14 7 chr9 29916119 29916259 -94159913 - B4 SINE B4 -41 251 111 5 813 359 265 75 28 chr9 29916423 29916577 -94159595 + L2b LINE L2 3228 3386 -1 5 813 387 0 0 0 chr9 29918555 29918598 -94157574 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 813 500 345 115 34 chr9 29918631 29919026 -94157146 + L1MEc LINE L1 1120 1546 -4854 5 813 1242 49 0 0 chr9 29919026 29919164 -94157008 + B1_Mm SINE Alu 1 138 -9 5 813 213 65 0 0 chr9 29919164 29919195 -94156977 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 813 500 345 115 34 chr9 29919195 29919247 -94156925 + L1MEc LINE L1 1547 1598 -4802 5 813 643 306 19 12 chr9 29919483 29919645 -94156527 + RSINE1 SINE B4 3 165 0 5 813 338 332 56 16 chr9 29919669 29919920 -94156252 + L1MEc LINE L1 1917 2177 -4223 5 813 1494 254 93 0 chr9 29919975 29920341 -94155831 + MTD LTR MaLR 18 417 -2 5 813 691 263 49 1 chr9 29920367 29920629 -94155543 + L1MEc LINE L1 2249 2530 -3789 5 813 216 184 0 0 chr9 29921425 29921463 -94154709 + T-rich Low_complexity Low_complexity 2 39 0 5 813 4718 120 107 7 chr9 29921922 29922754 -94153418 + L1Md_F LINE L1 380 1294 -5430 5 813 1333 79 6 0 chr9 29922754 29922932 -94153240 + L1Md_F2 LINE L1 6400 6578 -4 5 813 405 58 0 0 chr9 29923378 29923430 -94152742 + (GGA)n Simple_repeat Simple_repeat 1 52 0 5 813 995 283 78 9 chr9 29924446 29924778 -94151394 - ORR1E LTR MaLR -4 355 1 5 813 1283 269 134 68 chr9 29926342 29927156 -94149016 + L1MB3 LINE L1 5314 6181 -2 5 813 21 0 0 0 chr9 29927931 29927952 -94148220 + AT_rich Low_complexity Low_complexity 1 21 0 5 813 807 174 11 6 chr9 29929555 29929734 -94146438 + CT-rich Low_complexity Low_complexity 1 180 0 5 813 628 314 126 12 chr9 29930933 29931259 -94144913 - L2 LINE L2 -344 3075 2713 5 813 297 0 0 0 chr9 29931651 29931684 -94144488 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 813 207 275 31 71 chr9 29932240 29932338 -94143834 + L2b LINE L2 3282 3375 0 5 813 381 161 0 0 chr9 29932553 29932640 -94143532 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 813 336 331 54 0 chr9 29933103 29933233 -94142939 + MER3 DNA MER1_type 54 190 -19 5 813 792 288 126 9 chr9 29933288 29933704 -94142468 + L1MC1 LINE L1 5771 6249 -84 5 813 1495 211 77 55 chr9 29933704 29934066 -94142106 - ORR1D2 LTR MaLR 0 370 1 5 813 792 304 145 10 chr9 29934066 29934146 -94142026 + L1MC1 LINE L1 6250 6332 -1 5 813 244 232 14 42 chr9 29936201 29936273 -94139899 + CT-rich Low_complexity Low_complexity 3 72 0 5 813 21 0 0 0 chr9 29937085 29937106 -94139066 + AT_rich Low_complexity Low_complexity 1 21 0 5 813 302 67 22 0 chr9 29938161 29938206 -94137966 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 813 1173 72 0 0 chr9 29938206 29938345 -94137827 - B1_Mm SINE Alu -8 139 1 5 813 259 366 113 5 chr9 29939090 29939285 -94136887 + MER20 DNA MER1_type 4 219 0 5 813 423 194 0 0 chr9 29939969 29940062 -94136110 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 813 1035 228 36 43 chr9 29940161 29940462 -94135710 - MER2 DNA MER2_type -15 330 8 5 813 629 281 92 42 chr9 29940517 29940755 -94135417 - ORR1E LTR MaLR -6 353 104 5 813 1732 265 37 27 chr9 29941671 29942183 -94133989 + L1MB1 LINE L1 5571 6087 -81 5 813 304 178 14 14 chr9 29943361 29943435 -94132737 + CT-rich Low_complexity Low_complexity 3 76 0 5 813 204 143 0 0 chr9 29943633 29943675 -94132497 + (T)n Simple_repeat Simple_repeat 1 42 0 5 813 329 198 12 0 chr9 29943789 29943875 -94132297 + GA-rich Low_complexity Low_complexity 2 88 0 5 813 306 317 134 9 chr9 29944473 29944705 -94131467 - L1MB1 LINE L1 -18 6171 5911 5 813 436 287 124 5 chr9 29944717 29944927 -94131245 + L1MB1 LINE L1 5625 5859 -309 5 813 198 338 58 14 chr9 29948580 29948649 -94127523 + L2b LINE L2 3219 3290 -85 5 813 297 0 0 0 chr9 29949774 29949807 -94126365 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 813 510 301 76 98 chr9 29954963 29955575 -94120597 + L1MA8 LINE L1 5620 6240 -51 5 813 3247 55 179 2 chr9 29955888 29956323 -94119849 - RLTR1B LTR ERV1 0 512 1 5 813 604 229 14 14 chr9 29956835 29956977 -94119195 + MLT1A0 LTR MaLR 224 365 0 5 813 204 229 42 28 chr9 29958364 29958436 -94117736 + MIR SINE MIR 81 153 -123 5 813 21 36 0 0 chr9 29958619 29958647 -94117525 + AT_rich Low_complexity Low_complexity 1 28 0 5 813 258 271 20 40 chr9 29959215 29959315 -94116857 + MER53 DNA hAT 79 176 -17 5 813 198 0 0 0 chr9 29960834 29960856 -94115316 + (T)n Simple_repeat Simple_repeat 1 22 0 5 813 189 0 0 0 chr9 29961596 29961617 -94114555 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 813 265 283 11 11 chr9 29961629 29961708 -94114464 - MIR SINE MIR -144 124 42 5 813 299 179 75 0 chr9 29961758 29961825 -94114347 - MER5A1 DNA MER1_type 0 166 95 5 813 339 252 111 35 chr9 29962353 29962497 -94113675 + MLT1A1 LTR MaLR 254 408 0 5 813 209 329 73 0 chr9 29962546 29962628 -94113544 + MIRb SINE MIR 117 204 -64 5 813 219 333 12 0 chr9 29962604 29962685 -94113487 + MIRc SINE MIR 187 268 0 5 813 546 279 14 29 chr9 29962906 29963046 -94113126 - RSINE1 SINE B4 -25 140 3 5 813 302 317 10 19 chr9 29963926 29964029 -94112143 + CT-rich Low_complexity Low_complexity 4 105 0 5 813 448 314 29 109 chr9 29964826 29965065 -94111107 - MIRb SINE MIR -8 260 41 5 813 355 299 139 6 chr9 29966733 29966891 -94109281 + LTR16C LTR ERVL 300 478 -11 5 813 666 109 0 0 chr9 29968033 29968134 -94108038 + (TCC)n Simple_repeat Simple_repeat 3 103 0 5 813 499 308 84 32 chr9 29968350 29968635 -94107537 - L1MC4 LINE L1 -1 8041 7742 5 813 182 295 67 59 chr9 29969218 29969337 -94106835 - L2a LINE L2 -8 3418 3299 5 813 399 328 76 15 chr9 29969508 29969706 -94106466 + MER63A DNA AcHobo 1 210 0 5 813 324 346 39 10 chr9 29970071 29970278 -94105894 + L1MC4a LINE L1 5670 5882 -2000 5 813 1395 207 195 72 chr9 29970621 29970882 -94105290 + RMER6D LTR ERVK 2 310 -410 5 813 1620 0 0 0 chr9 29970882 29971109 -94105063 + (GGGAGA)n Simple_repeat Simple_repeat 1 227 0 5 813 1395 207 195 72 chr9 29971109 29971486 -94104686 + RMER6D LTR ERVK 311 719 -1 5 813 364 92 45 22 chr9 29971511 29971600 -94104572 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 6 813 31 0 0 0 chr9 29971765 29971796 -94104376 + AT_rich Low_complexity Low_complexity 1 31 0 6 813 875 125 35 7 chr9 29972070 29972215 -94103957 - B1_Mur4 SINE Alu 0 150 2 6 813 219 69 0 0 chr9 29975032 29975061 -94101111 + (TTC)n Simple_repeat Simple_repeat 2 30 0 6 813 907 147 7 0 chr9 29975455 29975591 -94100581 + B1_Mur4 SINE Alu 1 137 -13 6 813 560 337 49 49 chr9 29975846 29976111 -94100061 - B4 SINE B4 -18 274 10 6 813 497 255 14 62 chr9 29977497 29977643 -94098529 + B1F SINE Alu 11 149 0 6 813 285 297 35 43 chr9 29979290 29979406 -94096766 - RSINE1 SINE B4 -47 118 4 6 813 1423 147 4 9 chr9 29979502 29979728 -94096444 + URR1A DNA MER1_type 2 226 0 6 813 785 288 153 15 chr9 29979984 29980436 -94095736 + L1MA7 LINE L1 5775 6291 0 6 813 225 338 0 0 chr9 29980474 29980545 -94095627 + RSINE1 SINE B4 75 145 -20 6 813 243 0 0 0 chr9 29980545 29980572 -94095600 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 813 266 341 0 22 chr9 29981913 29982003 -94094169 + MER44B DNA MER2_type 6 93 -457 6 813 986 268 74 33 chr9 29982037 29982427 -94093745 + MER44B DNA MER2_type 74 479 -71 6 813 204 283 0 0 chr9 29982596 29982642 -94093530 + MIRc SINE MIR 80 125 -143 6 813 227 288 109 55 chr9 29982810 29982920 -94093252 - MIRm SINE MIR 0 276 161 6 813 1990 225 17 0 chr9 29985486 29985903 -94090269 - Lx9 LINE L1 -692 6952 6529 6 813 2123 225 48 0 chr9 29985900 29986363 -94089809 + Lx9 LINE L1 6909 7393 -251 6 813 548 176 8 39 chr9 29986363 29986493 -94089679 + Lx9 LINE L1 7519 7644 0 6 813 255 290 14 0 chr9 29986895 29986964 -94089208 + ID4 SINE ID 12 81 -2 6 813 320 369 7 15 chr9 29989560 29989695 -94086477 - MLT1D LTR MaLR -2 465 332 6 813 325 339 33 94 chr9 29989806 29990018 -94086154 - MLT1D LTR MaLR -306 199 1 6 813 373 82 55 0 chr9 29992375 29992448 -94083724 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 6 813 206 135 27 0 chr9 29992538 29992575 -94083597 + C-rich Low_complexity Low_complexity 2 39 0 6 813 274 222 0 0 chr9 29993942 29993996 -94082176 - MIR SINE MIR -13 249 196 6 813 1524 217 54 23 chr9 29994182 29994531 -94081641 - ORR1D2 LTR MaLR -10 360 1 6 813 206 255 18 18 chr9 29994621 29994733 -94081439 + (TATATG)n Simple_repeat Simple_repeat 5 116 0 6 813 783 205 67 0 chr9 29996850 29997045 -94079127 - B3 SINE B2 -5 211 4 6 813 217 206 46 31 chr9 29997447 29997512 -94078660 + GA-rich Low_complexity Low_complexity 5 70 0 6 813 567 336 24 28 chr9 29999104 29999358 -94076814 + MIR SINE MIR 1 253 -9 6 813 282 224 0 17 chr9 29999791 29999850 -94076322 + GA-rich Low_complexity Low_complexity 6 63 0 6 813 253 237 0 17 chr9 30001561 30001621 -94074551 - B1F1 SINE Alu -90 59 1 1 813 567 66 0 0 chr9 30003652 30003728 -94072444 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 2 813 744 175 0 0 chr9 30003756 30003910 -94072262 + (CAGAGA)n Simple_repeat Simple_repeat 3 156 0 3 813 285 98 0 0 chr9 30004941 30004982 -94071190 + (GGA)n Simple_repeat Simple_repeat 2 42 0 4 813 949 238 17 180 chr9 30005006 30005412 -94070760 + MTD LTR MaLR 74 405 -14 5 813 398 297 97 36 chr9 30005416 30005664 -94070508 - L3 LINE CR1 -101 4388 4126 6 813 351 0 0 0 chr9 30006491 30006530 -94069642 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 813 263 327 0 75 chr9 30007526 30007632 -94068540 + MTEa LTR MaLR 1 98 -281 8 813 817 158 23 28 chr9 30007763 30007939 -94068233 + ORR1B2 LTR MaLR 1 175 -192 9 813 351 0 0 0 chr9 30008655 30008694 -94067478 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 813 1406 244 76 13 chr9 30009090 30009484 -94066688 - MTD LTR MaLR 0 419 1 1 813 357 247 11 0 chr9 30010513 30010602 -94065570 - L2a LINE L2 0 3426 3337 1 813 524 299 151 17 chr9 30011384 30011622 -94064550 + B4A SINE B4 1 270 -22 1 813 1504 248 35 20 chr9 30011853 30012252 -94063920 + MTD LTR MaLR 1 405 -14 1 813 23 0 0 0 chr9 30012353 30012376 -94063796 + AT_rich Low_complexity Low_complexity 1 23 0 1 813 3080 189 45 16 chr9 30012586 30013332 -94062840 + MYSERV16_I-int LTR ERVK 811 1450 -876 1 813 3486 128 18 2 chr9 30013341 30013890 -94062282 + MYSERV16_I-int LTR ERVK 1682 2239 -87 1 814 1700 214 50 36 chr9 30016060 30016536 -94059636 - RLTR16 LTR ERVK -22 483 1 1 814 203 321 0 12 chr9 30016818 30016900 -94059272 + L2a LINE L2 3345 3425 -1 1 814 297 51 0 0 chr9 30018212 30018251 -94057921 + (CAGA)n Simple_repeat Simple_repeat 1 39 0 1 814 185 333 44 0 chr9 30018633 30018723 -94057449 - MIRc SINE MIR -32 236 143 2 814 288 77 0 0 chr9 30018723 30018762 -94057410 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 814 277 295 153 69 chr9 30019851 30019982 -94056190 + RSINE1 SINE B4 24 165 0 2 814 1274 284 100 30 chr9 30022127 30022736 -94053436 + L1MA9 LINE L1 5661 6312 0 2 814 309 135 0 0 chr9 30023564 30023616 -94052556 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 814 216 214 123 18 chr9 30023752 30023809 -94052363 - MIRb SINE MIR -160 108 46 2 814 567 53 0 0 chr9 30024929 30025004 -94051168 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 814 756 222 88 0 chr9 30025017 30025211 -94050961 - B3 SINE B2 -5 211 1 2 814 1180 271 58 30 chr9 30025683 30026045 -94050127 - MTD LTR MaLR -9 410 39 2 814 630 273 37 32 chr9 30027051 30027267 -94048905 + MTD LTR MaLR 1 217 -202 2 814 3355 109 22 6 chr9 30027279 30027768 -94048404 + Lx2 LINE L1 6149 6645 -352 3 814 1326 154 9 0 chr9 30027766 30027987 -94048185 + Lx2 LINE L1 6775 6997 0 3 814 340 229 0 0 chr9 30028011 30028072 -94048100 - MERVL_2A-int LTR ERVL -1142 4619 4559 3 814 494 259 56 0 chr9 30028080 30028223 -94047949 + MTD LTR MaLR 267 417 -2 2 814 249 153 12 12 chr9 30028243 30028319 -94047853 + RMER21A LTR ERV1 394 445 -502 3 814 664 241 94 51 chr9 30028321 30028597 -94047575 + RMER21B LTR ERV1 280 567 -275 3 814 262 250 37 104 chr9 30028660 30028794 -94047378 + RMER21B LTR ERV1 775 899 -48 3 814 307 133 19 48 chr9 30028841 30028944 -94047228 + (CTATA)n Simple_repeat Simple_repeat 3 102 0 3 814 3559 15 2 0 chr9 30029031 30029426 -94046746 - MTA_Mm LTR MaLR 0 396 1 3 814 974 179 15 30 chr9 30029464 30029665 -94046507 + URR1B DNA MER1_type 28 225 0 3 814 2071 209 73 17 chr9 30029677 30030197 -94045975 + RMER15 LTR ERVL 27 575 0 3 814 2598 103 29 29 chr9 30030435 30030856 -94045316 - Lx LINE L1 -2 6652 6232 3 814 527 312 104 55 chr9 30031636 30031904 -94044268 + MLT1A0 LTR MaLR 1 284 -81 3 814 1611 227 88 0 chr9 30031904 30032288 -94043884 - MTD LTR MaLR -1 418 1 4 814 527 312 104 55 chr9 30032288 30032365 -94043807 + MLT1A0 LTR MaLR 285 363 -2 3 814 364 217 5 10 chr9 30032772 30032987 -94043185 + (TG)n Simple_repeat Simple_repeat 1 213 0 4 814 663 188 0 0 chr9 30033000 30033176 -94042996 + (TG)n Simple_repeat Simple_repeat 2 177 0 4 814 222 266 23 81 chr9 30034085 30034171 -94042001 - ID2 SINE ID 0 83 3 4 814 1478 88 0 5 chr9 30034291 30034486 -94041686 + B2_Mm2 SINE B2 2 195 0 4 814 228 218 43 54 chr9 30034664 30034756 -94041416 + MTEa LTR MaLR 288 378 -1 4 814 215 365 0 0 chr9 30034924 30034998 -94041174 + MIRb SINE MIR 177 250 -18 4 814 305 357 13 13 chr9 30035948 30036104 -94040068 + MLT1I LTR MaLR 101 256 -155 4 814 325 269 111 23 chr9 30038498 30038669 -94037503 + L2 LINE L2 2824 3009 -410 4 814 6356 146 35 17 chr9 30038729 30040047 -94036125 - Lx LINE L1 0 6654 5313 4 814 237 65 0 0 chr9 30040257 30040288 -94035884 + (T)n Simple_repeat Simple_repeat 1 31 0 4 814 338 310 8 17 chr9 30040717 30040835 -94035337 + LFSINE_Vert SINE SINE 24 140 -319 5 814 274 357 49 0 chr9 30041167 30041310 -94034862 + MIRb SINE MIR 3 152 -116 5 814 229 311 51 15 chr9 30044231 30044368 -94031804 + MIR SINE MIR 102 243 -19 5 814 621 61 0 0 chr9 30044499 30044581 -94031591 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 814 361 282 130 16 chr9 30045400 30045584 -94030588 - MER3 DNA MER1_type -4 205 1 5 814 182 269 85 49 chr9 30045667 30045749 -94030423 - MIRb SINE MIR -73 195 111 5 814 1310 293 22 67 chr9 30046550 30047084 -94029088 - MLT2B2 LTR ERVL -5 510 1 5 814 220 27 26 26 chr9 30047129 30047167 -94029005 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 814 300 280 147 0 chr9 30047191 30047334 -94028838 + MER103 DNA DNA 3 166 0 5 814 22 0 0 0 chr9 30050931 30050953 -94025219 + AT_rich Low_complexity Low_complexity 1 22 0 5 814 415 279 10 0 chr9 30051094 30051198 -94024974 - PB1D10 SINE Alu -7 110 6 6 814 889 125 19 0 chr9 30053642 30053802 -94022370 + (GGAA)n Simple_repeat Simple_repeat 3 165 0 6 814 531 294 72 62 chr9 30053824 30054586 -94021586 + L1MEf LINE L1 1872 2603 -3543 6 814 720 201 34 91 chr9 30054586 30054794 -94021378 + B3A SINE B2 2 197 -1 6 814 444 284 73 54 chr9 30054794 30055120 -94021052 + L1MEf LINE L1 2604 2927 -3219 6 814 284 300 25 0 chr9 30055196 30055276 -94020896 + GA-rich Low_complexity Low_complexity 2 83 0 6 814 291 301 93 35 chr9 30055385 30055643 -94020529 + L1MEf LINE L1 3173 3445 -2701 6 814 30 27 0 0 chr9 30055648 30055685 -94020487 + AT_rich Low_complexity Low_complexity 1 37 0 6 814 398 330 60 3 chr9 30055690 30055988 -94020184 + L1MEf LINE L1 4427 4741 -1405 6 814 356 325 58 11 chr9 30056227 30056401 -94019771 + LTR33C LTR ERVL 3 184 -445 6 814 303 257 166 33 chr9 30056439 30056620 -94019552 - CYRA11_Mm Unknown Y-chromosome -225 392 188 6 814 653 189 8 0 chr9 30056505 30056637 -94019535 + URR1B DNA MER1_type 93 225 0 6 814 381 292 27 13 chr9 30056798 30056947 -94019225 + MLT2E LTR ERVL 472 622 -6 6 814 311 354 31 8 chr9 30057544 30057672 -94018500 - MIRb SINE MIR -77 191 61 7 814 216 67 0 0 chr9 30058317 30058347 -94017825 + (TTG)n Simple_repeat Simple_repeat 2 31 0 7 814 236 326 29 39 chr9 30059216 30059318 -94016854 + MLT1D LTR MaLR 7 107 -398 7 814 480 108 106 18 chr9 30059444 30059614 -94016558 + RMER17C LTR ERVK 90 274 -136 7 814 384 22 0 0 chr9 30059614 30059659 -94016513 + (GAAA)n Simple_repeat Simple_repeat 4 48 0 7 814 711 132 0 0 chr9 30059659 30059773 -94016399 + (GGGA)n Simple_repeat Simple_repeat 3 116 0 7 814 1067 134 6 0 chr9 30059782 30059961 -94016211 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 814 554 281 44 52 chr9 30060008 30060237 -94015935 + MLT1D LTR MaLR 276 502 -3 7 814 619 230 27 77 chr9 30061159 30061380 -94014792 + B3 SINE B2 5 214 -2 7 814 504 291 98 39 chr9 30061745 30061949 -94014223 + MIRb SINE MIR 40 255 -13 7 814 278 306 101 53 chr9 30062832 30063039 -94013133 + LTR50 LTR ERVL 3 219 -576 7 814 252 77 0 0 chr9 30063308 30063347 -94012825 + (CAGT)n Simple_repeat Simple_repeat 3 41 0 8 814 250 205 24 0 chr9 30063369 30063452 -94012720 + CT-rich Low_complexity Low_complexity 2 86 0 8 814 304 325 26 32 chr9 30063861 30064017 -94012155 + MER5A DNA MER1_type 34 188 -1 8 814 247 281 156 52 chr9 30064216 30064389 -94011783 + LTR16E1 LTR ERVL 347 537 -1 8 814 428 213 18 11 chr9 30064707 30064807 -94011365 + ORR1D2 LTR MaLR 1 104 -255 8 814 297 316 71 35 chr9 30065511 30065708 -94010464 + MIR SINE MIR 21 224 -38 8 814 3411 267 75 52 chr9 30065712 30067183 -94008989 + Lx6 LINE L1 5629 7434 -26 8 814 265 362 51 26 chr9 30069471 30069627 -94006545 - ERVL-E-int LTR ERVL -1468 4199 4040 8 814 499 296 58 10 chr9 30069966 30070174 -94005998 - HERV16-int LTR ERVL -4594 402 185 8 814 267 31 0 0 chr9 30070954 30070986 -94005186 + (TC)n Simple_repeat Simple_repeat 2 33 0 8 814 609 83 0 0 chr9 30070987 30071071 -94005101 + (TTC)n Simple_repeat Simple_repeat 1 84 0 9 814 345 125 0 0 chr9 30071101 30071157 -94005015 + (GA)n Simple_repeat Simple_repeat 2 57 0 9 814 360 0 0 0 chr9 30072382 30072422 -94003750 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 814 279 79 0 0 chr9 30072939 30072977 -94003195 + (A)n Simple_repeat Simple_repeat 1 38 0 9 814 339 25 0 0 chr9 30073195 30073235 -94002937 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 814 363 44 0 0 chr9 30074793 30074838 -94001334 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 814 637 165 9 35 chr9 30074879 30075111 -94001061 + (TA)n Simple_repeat Simple_repeat 1 225 0 9 814 396 0 0 0 chr9 30076490 30076534 -93999638 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 814 340 20 20 20 chr9 30076534 30076583 -93999589 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 814 300 258 46 4 chr9 30076589 30076679 -93999493 - PB1D10 SINE Alu -10 110 17 9 814 229 333 61 15 chr9 30076979 30077110 -93999062 - L3 LINE CR1 -575 3914 3778 1 814 199 163 23 0 chr9 30077124 30077167 -93999005 - L3 LINE CR1 -869 3620 3577 1 814 411 361 83 15 chr9 30077780 30077985 -93998187 + MLT1H1 LTR MaLR 185 403 -152 1 814 286 253 0 142 chr9 30078583 30078689 -93997483 - MTEa LTR MaLR -288 91 1 1 814 413 256 99 115 chr9 30078725 30078968 -93997204 + MLT1F1 LTR MaLR 329 567 -2 1 814 216 0 0 0 chr9 30079742 30079766 -93996406 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 814 620 358 35 3 chr9 30079933 30080216 -93995956 - Tigger7 DNA MER2_type -2102 389 98 1 814 180 77 0 0 chr9 30080302 30080328 -93995844 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 1 814 323 307 27 60 chr9 30080552 30080701 -93995471 - MLT2B4 LTR ERVL -2 558 415 1 814 253 215 18 36 chr9 30080712 30080823 -93995349 + CT-rich Low_complexity Low_complexity 2 110 0 1 814 309 51 0 0 chr9 30080827 30080866 -93995306 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 814 490 320 40 10 chr9 30081164 30081363 -93994809 - MLT2B4 LTR ERVL -346 210 6 1 814 388 302 0 0 chr9 30082666 30082762 -93993410 + PB1D10 SINE Alu 3 98 -19 1 814 197 211 0 17 chr9 30082792 30082850 -93993322 + GA-rich Low_complexity Low_complexity 2 58 0 1 814 223 257 56 28 chr9 30083718 30083790 -93992382 - L2c LINE L2 -209 3178 3105 1 814 450 0 0 0 chr9 30084202 30084252 -93991920 + (TTGTG)n Simple_repeat Simple_repeat 4 53 0 1 814 618 122 0 0 chr9 30084983 30085081 -93991091 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 1 814 683 347 110 24 chr9 30086330 30086785 -93989387 + MER82 DNA MER2_type 158 651 -2 1 814 1740 153 15 43 chr9 30086829 30087282 -93988890 + RMER17C LTR ERVK 16 432 -526 1 814 3851 89 6 4 chr9 30087800 30088340 -93987832 - Lx3_Mus LINE L1 -8 7001 6461 1 814 297 0 0 0 chr9 30088911 30088944 -93987228 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 814 297 0 0 0 chr9 30088948 30088981 -93987191 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 814 4530 106 49 36 chr9 30088982 30089698 -93986474 - Lx2B LINE L1 -140 6860 6136 1 814 414 0 0 0 chr9 30089707 30089753 -93986419 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 814 1002 225 149 13 chr9 30091396 30091711 -93984461 + MTEa LTR MaLR 22 379 0 1 814 299 145 14 0 chr9 30093882 30093951 -93982221 + (TTGG)n Simple_repeat Simple_repeat 1 70 0 1 814 5607 76 1 17 chr9 30094138 30094890 -93981282 + L1Md_F2 LINE L1 5843 6582 0 1 814 351 0 0 0 chr9 30095119 30095158 -93981014 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 814 1556 242 60 48 chr9 30096429 30096929 -93979243 - RMER20A LTR ERVK 0 516 11 1 814 182 369 38 28 chr9 30096935 30097041 -93979131 - L2c LINE L2 -263 3124 3018 1 814 340 202 119 0 chr9 30097579 30097663 -93978509 + B3A SINE B2 1 94 -104 1 814 8740 56 3 1 chr9 30097679 30099452 -93976720 - L1Md_F2 LINE L1 0 6582 4806 1 814 886 56 0 0 chr9 30099452 30099559 -93976613 - U6 snRNA snRNA 0 107 1 1 814 206 233 12 0 chr9 30099670 30099756 -93976416 + (TA)n Simple_repeat Simple_repeat 2 88 0 1 814 1226 206 157 97 chr9 30099764 30099782 -93976390 - MT2A LTR ERVL -54 479 462 1 814 576 40 0 0 chr9 30099782 30099857 -93976315 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 814 1226 206 157 97 chr9 30099857 30100290 -93975882 - MT2A LTR ERVL -72 461 2 1 814 514 298 129 19 chr9 30100453 30100764 -93975408 + MER2 DNA MER2_type 1 345 0 1 814 3240 277 62 43 chr9 30101093 30101764 -93974408 - Charlie1a DNA MER1_type -22 1433 765 1 814 870 116 0 0 chr9 30101764 30101902 -93974270 + (CA)n Simple_repeat Simple_repeat 1 138 0 1 814 594 219 85 40 chr9 30101909 30102085 -93974087 + B3A SINE B2 1 184 -14 1 814 3240 277 62 43 chr9 30102085 30102674 -93973498 - Charlie1a DNA MER1_type -695 760 140 1 814 315 0 0 0 chr9 30102772 30102807 -93973365 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 814 396 0 0 0 chr9 30102807 30102850 -93973322 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 814 264 59 0 0 chr9 30103699 30103733 -93972439 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 814 363 44 0 0 chr9 30103733 30103777 -93972395 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 814 1431 258 25 16 chr9 30103790 30104153 -93972019 - MT2A LTR ERVL -81 452 87 1 814 2409 304 52 56 chr9 30104153 30104401 -93971771 + Lx7 LINE L1 6421 6659 -1037 1 814 1010 80 43 7 chr9 30104401 30104539 -93971633 + B1_Mus1 SINE Alu 5 147 -1 1 814 2409 304 52 56 chr9 30104539 30105292 -93970880 + Lx7 LINE L1 6660 7418 -278 1 814 749 276 30 0 chr9 30105445 30105644 -93970528 + B3 SINE B2 6 210 -6 1 814 297 277 12 0 chr9 30105649 30105732 -93970440 - MT2A LTR ERVL -445 88 5 1 814 213 268 12 47 chr9 30105942 30106028 -93970144 + MIR SINE MIR 180 262 0 1 814 229 290 0 0 chr9 30106284 30106346 -93969826 + (TATG)n Simple_repeat Simple_repeat 1 62 0 1 814 326 287 0 44 chr9 30106429 30106520 -93969652 - B4A SINE B4 -203 89 3 1 814 270 331 40 16 chr9 30107317 30107443 -93968729 - MER94 DNA AcHobo 0 134 6 1 814 486 0 0 0 chr9 30109212 30109266 -93966906 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 814 476 178 35 8 chr9 30111463 30111588 -93964584 - ORR1D1 LTR MaLR 0 374 244 1 814 339 119 169 0 chr9 30111641 30111700 -93964472 - ORR1D1 LTR MaLR -305 69 1 1 814 378 0 0 0 chr9 30111758 30111800 -93964372 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 814 375 287 41 57 chr9 30112175 30112297 -93963875 + MER45A DNA Tip100 13 132 -46 1 814 380 339 109 50 chr9 30112900 30113139 -93963033 - MLT1E1 LTR MaLR -1 653 307 1 814 483 18 0 0 chr9 30113194 30113250 -93962922 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 814 628 264 14 48 chr9 30113251 30113398 -93962774 + RSINE1 SINE B4 3 144 -21 1 814 411 21 0 0 chr9 30113408 30113456 -93962716 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 814 180 371 61 27 chr9 30114444 30114591 -93961581 - MIRc SINE MIR 0 268 117 1 814 1610 162 20 3 chr9 30114805 30115102 -93961070 + Lx LINE L1 6353 6654 0 1 814 234 378 0 0 chr9 30115275 30115349 -93960823 + MIR SINE MIR 103 176 -86 1 814 333 68 0 0 chr9 30115471 30115515 -93960657 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1 814 390 214 0 0 chr9 30115896 30115966 -93960206 - MER63D DNA AcHobo -677 384 315 1 814 181 333 55 44 chr9 30116235 30116326 -93959846 + MIR SINE MIR 42 133 -75 1 814 297 0 0 0 chr9 30116957 30116990 -93959182 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 814 499 299 68 21 chr9 30118029 30118220 -93957952 + MIRb SINE MIR 49 248 -20 1 814 252 0 0 0 chr9 30118483 30118511 -93957661 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 814 1011 161 0 0 chr9 30118511 30118690 -93957482 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 814 801 217 0 0 chr9 30118712 30118892 -93957280 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 814 303 177 0 0 chr9 30121417 30121479 -93954693 + (CAT)n Simple_repeat Simple_repeat 1 62 0 1 814 632 155 27 27 chr9 30123960 30124106 -93952066 - L1MB4 LINE L1 -17 6163 6018 1 814 591 192 39 0 chr9 30124124 30124254 -93951918 + L1MA4 LINE L1 5802 5936 -364 1 814 951 231 20 15 chr9 30124524 30124726 -93951446 - B3 SINE B2 -11 205 3 1 814 517 325 77 9 chr9 30124763 30125086 -93951086 - L1MB4 LINE L1 -246 5934 5590 1 814 28 0 0 0 chr9 30125283 30125311 -93950861 + AT_rich Low_complexity Low_complexity 1 28 0 1 814 436 266 77 53 chr9 30125318 30125564 -93950608 - L1MB4 LINE L1 -588 5592 5341 1 814 382 248 5 28 chr9 30125811 30125920 -93950252 - PB1D10 SINE Alu 0 147 10 1 814 338 215 24 48 chr9 30126365 30126448 -93949724 - ID4_ SINE ID -1 82 2 1 814 537 206 21 0 chr9 30126496 30126593 -93949579 - B3 SINE B2 0 216 118 1 814 267 279 139 0 chr9 30126573 30126659 -93949513 - B2_Mm2 SINE B2 -69 126 29 1 814 697 268 81 26 chr9 30126786 30127020 -93949152 + ORR1E LTR MaLR 93 339 -20 1 814 186 43 0 0 chr9 30127021 30127044 -93949128 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 814 573 278 20 7 chr9 30127123 30127275 -93948897 - MLT1A0 LTR MaLR -12 353 200 1 814 810 259 42 82 chr9 30127412 30127791 -93948381 - L1MDa LINE L1 -2368 4169 3806 1 814 619 276 26 31 chr9 30127827 30128021 -93948151 - ORR1E LTR MaLR -4 355 163 1 814 534 129 0 0 chr9 30128033 30128118 -93948054 + (GA)n Simple_repeat Simple_repeat 1 85 0 1 814 640 239 138 0 chr9 30128118 30128285 -93947887 - ORR1E LTR MaLR -168 191 2 1 814 982 245 160 84 chr9 30128304 30129054 -93947118 - L1MDa LINE L1 -2811 3726 2892 1 814 423 0 0 0 chr9 30129054 30129101 -93947071 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 1 814 982 248 151 57 chr9 30129101 30129907 -93946265 - L1MDa LINE L1 -3646 2891 2017 1 814 300 296 29 36 chr9 30129951 30130088 -93946084 - L1MDa LINE L1 -4659 1974 1839 1 814 405 306 49 27 chr9 30130165 30130390 -93945782 - L1MDa LINE L1 -6230 403 174 1 814 186 103 0 0 chr9 30131190 30131219 -93944953 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 1 814 250 300 111 76 chr9 30132054 30132541 -93943631 + L1M5 LINE L1 2687 3190 -2956 1 814 275 295 13 0 chr9 30132591 30132669 -93943503 + GA-rich Low_complexity Low_complexity 3 81 0 1 814 686 323 97 0 chr9 30132831 30133057 -93943115 - MTEa LTR MaLR -131 248 1 1 814 873 141 7 0 chr9 30133106 30133248 -93942924 - URR1B DNA MER1_type 0 225 83 1 814 2374 284 73 45 chr9 30133295 30133817 -93942355 - MTE-int LTR MaLR -68 1512 971 1 814 1797 195 194 5 chr9 30133817 30134261 -93941911 + RLTR24 LTR ERV1 2 529 0 1 814 2374 284 73 45 chr9 30134261 30134601 -93941571 - MTE-int LTR MaLR -610 970 626 1 814 229 202 102 92 chr9 30134784 30134882 -93941290 - RLTR19 LTR ERVK -81 418 320 1 814 254 319 17 17 chr9 30135513 30135628 -93940544 - MuLV-int LTR ERV1 -337 7269 7155 1 814 972 221 56 92 chr9 30135720 30136078 -93940094 - RLTR19-int LTR ERVK -1756 4381 4037 1 814 292 194 95 69 chr9 30136126 30136242 -93939930 - RLTR19-int LTR ERVK -436 2802 2684 1 814 1593 189 34 103 chr9 30136223 30136777 -93939395 - RLTR19-int LTR ERVK -2169 3968 3453 1 814 694 250 29 17 chr9 30136982 30137222 -93938950 - RLTR19-int LTR ERVK -3556 2581 2339 1 814 321 127 38 12 chr9 30137219 30137299 -93938873 - RLTR19-int LTR ERVK -3408 2114 2033 1 814 774 60 0 0 chr9 30137545 30137645 -93938527 + (TCTA)n Simple_repeat Simple_repeat 4 103 0 1 814 1540 193 112 3 chr9 30137722 30138044 -93938128 + ORR1B2 LTR MaLR 1 357 -10 1 814 1510 228 88 88 chr9 30138041 30138494 -93937678 - MTC-int LTR MaLR -138 1120 666 1 814 2660 112 79 42 chr9 30138494 30138924 -93937248 - RLTR41 LTR ERV1 0 446 1 1 814 1510 251 106 76 chr9 30138924 30139025 -93937147 - MTC-int LTR MaLR -593 665 634 1 814 411 154 25 134 chr9 30139025 30139182 -93936990 - RLTR19-int LTR ERVK -4977 1160 1021 1 814 830 233 98 13 chr9 30139471 30139788 -93936384 - RLTR42-int LTR ERVK -4186 1336 1108 1 814 234 75 36 36 chr9 30139867 30139922 -93936250 + (CAAAAA)n Simple_repeat Simple_repeat 2 56 0 1 814 423 0 0 0 chr9 30140879 30140926 -93935246 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 814 706 253 63 95 chr9 30140981 30141265 -93934907 - MLT2C1 LTR ERVL -109 288 14 2 814 260 287 148 0 chr9 30141411 30141519 -93934653 + L1MEf LINE L1 360 483 -5611 2 814 606 254 184 25 chr9 30141514 30141796 -93934376 - Lx8 LINE L1 -807 6666 6340 2 814 1655 293 43 44 chr9 30141811 30142421 -93933751 + Lx8 LINE L1 6740 7341 -132 2 814 618 14 0 0 chr9 30142421 30142492 -93933680 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 814 1655 293 43 44 chr9 30142492 30142606 -93933566 + Lx8 LINE L1 7342 7463 -10 2 814 23 0 0 0 chr9 30142689 30142712 -93933460 + AT_rich Low_complexity Low_complexity 1 23 0 2 814 909 139 0 27 chr9 30142972 30143157 -93933015 + GA-rich Low_complexity Low_complexity 1 180 0 2 814 473 0 0 17 chr9 30143157 30143215 -93932957 + (GAA)n Simple_repeat Simple_repeat 1 57 0 2 814 660 340 78 21 chr9 30143276 30143658 -93932514 + L1MEf LINE L1 800 1203 -4997 2 814 240 59 0 0 chr9 30143756 30143790 -93932382 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 814 576 0 0 0 chr9 30144497 30144561 -93931611 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2 814 576 0 0 0 chr9 30144638 30144702 -93931470 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2 814 704 177 40 0 chr9 30144722 30144846 -93931326 - B2_Mm2 SINE B2 -66 129 1 2 814 258 346 145 68 chr9 30144868 30145206 -93930966 - L2a LINE L2 -48 3378 3015 2 814 3999 86 0 50 chr9 30145364 30145526 -93930646 + L1MA8 LINE L1 5139 5292 -591 2 814 1108 102 0 0 chr9 30145526 30145673 -93930499 + B1_Mus2 SINE Alu 1 147 0 2 814 3999 86 0 49 chr9 30145673 30146137 -93930035 + L1MA8 LINE L1 5293 5766 -525 2 101 4068 54 2 0 chr9 30146137 30146634 -93929538 + L1_Mus1 LINE L1 6070 6567 0 2 815 1365 265 28 16 chr9 30146634 30146690 -93929482 + L1MA8 LINE L1 5767 5826 -465 2 815 541 195 8 63 chr9 30147444 30147570 -93928602 + PB1D9 SINE Alu 1 119 -1 2 815 2526 140 32 7 chr9 30147648 30148059 -93928113 + MTC LTR MaLR 1 421 0 2 815 25 0 0 0 chr9 30149946 30149971 -93926201 + AT_rich Low_complexity Low_complexity 1 25 0 2 815 789 254 89 68 chr9 30150492 30150862 -93925310 + RMER2 LTR ERV1 1 480 -87 2 815 23 0 0 0 chr9 30151156 30151179 -93924993 + AT_rich Low_complexity Low_complexity 1 23 0 2 815 224 361 86 12 chr9 30151346 30151590 -93924582 + L2a LINE L2 2598 2859 -560 2 815 1263 241 19 98 chr9 30151749 30152159 -93924013 + MTE2a LTR MaLR 2 379 0 2 815 490 337 48 34 chr9 30152548 30152757 -93923415 + LTR88b LTR Gypsy? 22 233 -604 2 815 188 0 74 0 chr9 30152968 30152995 -93923177 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 815 379 271 200 0 chr9 30153899 30154069 -93922103 - MER3 DNA MER1_type 0 209 6 2 815 461 252 146 39 chr9 30154075 30154131 -93922041 - CYRA11_Mm Unknown Y-chromosome -225 392 197 2 815 931 126 0 0 chr9 30154131 30154274 -93921898 + URR1B DNA MER1_type 83 225 0 2 815 226 338 40 0 chr9 30154342 30154416 -93921756 + L2a LINE L2 3301 3377 -49 2 815 1023 277 106 6 chr9 30154858 30155199 -93920973 - MTEb LTR MaLR -1 378 4 2 815 432 293 158 6 chr9 30155199 30155364 -93920808 - MT2A LTR ERVL 0 533 344 2 815 888 326 77 43 chr9 30155366 30155780 -93920392 - MT2A LTR ERVL -105 428 1 2 815 1849 259 37 5 chr9 30155790 30156224 -93919948 - MTE-int LTR MaLR -2 1578 1131 2 815 532 300 36 0 chr9 30156226 30156366 -93919806 + MTE-int LTR MaLR 921 1065 -515 2 815 471 295 60 7 chr9 30156377 30156527 -93919645 - MTEb LTR MaLR -221 158 1 2 815 1050 289 92 30 chr9 30158029 30158364 -93917808 + MTEa LTR MaLR 1 356 -23 2 815 21 36 0 0 chr9 30159189 30159217 -93916955 + AT_rich Low_complexity Low_complexity 1 28 0 2 815 365 281 66 7 chr9 30159575 30159711 -93916461 - L1M4 LINE L1 -5601 941 798 2 815 370 43 0 0 chr9 30159739 30159786 -93916386 - L1_Mm LINE L1 -1472 4411 4365 2 815 4035 68 150 75 chr9 30159783 30160247 -93915925 + L1Md_F2 LINE L1 4800 5332 -551 2 815 431 0 0 0 chr9 30160247 30160296 -93915876 + MT2_Mm LTR ERVL 396 444 -49 2 815 4035 68 150 75 chr9 30160296 30160515 -93915657 + L1Md_F2 LINE L1 5333 5586 -297 2 815 7757 62 0 2 chr9 30160516 30161494 -93914678 + L1Md_F2 LINE L1 5588 6563 -19 2 815 1136 290 109 39 chr9 30161511 30161971 -93914201 + LTR53 LTR ERVL 21 512 -7 2 815 322 364 72 0 chr9 30161978 30162187 -93913985 - L1M4 LINE L1 -5747 795 572 2 815 399 301 53 25 chr9 30162356 30162601 -93913571 - L1M4 LINE L1 -6286 256 5 2 815 219 329 0 0 chr9 30162863 30162936 -93913236 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 815 2341 296 45 51 chr9 30163013 30163904 -93912268 - L1_Mur3 LINE L1 -393 5487 4591 2 815 261 0 0 0 chr9 30163904 30163933 -93912239 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 815 2341 296 45 51 chr9 30163933 30164435 -93911737 - L1_Mur3 LINE L1 -1290 4590 4103 2 815 372 181 52 21 chr9 30164433 30164529 -93911643 - Lx4B LINE L1 -6 7052 6954 2 815 18735 102 6 12 chr9 30164535 30166766 -93909406 + L1Md_F2 LINE L1 446 2637 -3246 2 815 183 42 0 0 chr9 30166766 30166790 -93909382 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 815 26525 69 5 1 chr9 30166790 30169723 -93906449 + L1Md_F2 LINE L1 2638 5586 -297 2 815 8037 56 0 1 chr9 30169723 30170717 -93905455 + L1Md_F2 LINE L1 5587 6579 -3 2 815 1508 283 143 13 chr9 30170747 30171345 -93904827 - L1_Mur3 LINE L1 -1742 4138 3473 2 815 216 0 0 0 chr9 30171345 30171369 -93904803 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 815 1508 283 143 13 chr9 30171369 30171815 -93904357 - L1_Mur3 LINE L1 -2408 3472 2959 2 815 322 267 32 32 chr9 30171818 30171911 -93904261 + PB1D9 SINE Alu 20 112 -8 2 815 838 168 0 0 chr9 30172152 30172289 -93903883 + B1_Mur3 SINE Alu 11 147 -2 2 815 30 59 0 0 chr9 30172793 30172844 -93903328 + AT_rich Low_complexity Low_complexity 1 51 0 2 815 7042 110 67 13 chr9 30173592 30174702 -93901470 - Lx2B LINE L1 -2 6998 5829 2 815 761 130 0 9 chr9 30175133 30175249 -93900923 - B1_Mur4 SINE Alu -2 148 34 2 815 252 241 32 75 chr9 30175175 30175269 -93900903 - RLTR25B LTR ERVK -526 502 413 2 815 841 255 9 5 chr9 30175386 30175599 -93900573 + B3 SINE B2 2 215 -1 2 815 406 311 87 13 chr9 30175917 30176067 -93900105 + MER21B LTR ERV1 71 231 -632 2 815 505 319 76 39 chr9 30176070 30176399 -93899773 + MER21B LTR ERV1 365 756 -107 2 815 1226 284 44 0 chr9 30178286 30178652 -93897520 - Lx8 LINE L1 -640 6833 6452 2 815 735 71 0 0 chr9 30178705 30178803 -93897369 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 815 472 341 72 75 chr9 30179124 30179444 -93896728 + L1MEc LINE L1 79 397 -6003 2 815 2392 134 37 41 chr9 30179938 30180187 -93895985 + L1VL2 LINE L1 557 819 -5516 2 815 1160 95 0 0 chr9 30180187 30180335 -93895837 + B1_Mus1 SINE Alu 1 148 0 2 815 5614 127 45 24 chr9 30180335 30181556 -93894616 + L1VL2 LINE L1 820 2051 -1564 2 815 690 140 17 0 chr9 30181534 30181688 -93894484 + Lx2A LINE L1 3700 3862 -2018 2 815 6598 142 18 4 chr9 30181668 30182822 -93893350 + Lx2A LINE L1 4622 5791 -86 2 815 2754 32 103 0 chr9 30182820 30183190 -93892982 - L1Md_F2 LINE L1 -540 6042 5635 2 815 6821 127 36 48 chr9 30183190 30184402 -93891770 + Lx2A LINE L1 5810 7007 -1 2 815 247 289 0 11 chr9 30184806 30184897 -93891275 + L1MEc LINE L1 711 800 -5600 2 815 1345 215 25 21 chr9 30184949 30185053 -93891119 - RLTR20B2 LTR ERVK 0 560 460 2 815 405 0 0 0 chr9 30185053 30185098 -93891074 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 815 1345 215 25 21 chr9 30185098 30185273 -93890899 - RLTR20B2 LTR ERVK -101 459 281 2 815 358 306 50 70 chr9 30185315 30185515 -93890657 + L1MEc LINE L1 2284 2479 -3840 2 815 1365 230 15 0 chr9 30185699 30185969 -93890203 - ORR1D1 LTR MaLR -2 372 99 2 815 2442 168 70 20 chr9 30185971 30186377 -93889795 - RLTR28 LTR ERVL 0 524 114 2 815 2470 54 0 12 chr9 30186377 30186696 -93889476 + L1Md_F2 LINE L1 6261 6575 -7 2 815 2442 168 70 20 chr9 30186696 30186788 -93889384 - RLTR28 LTR ERVL -411 113 3 2 815 569 149 0 50 chr9 30186788 30186887 -93889285 - ORR1D1 LTR MaLR -273 101 8 2 815 296 314 109 8 chr9 30186902 30187159 -93889013 + L1M4 LINE L1 2506 2788 -3358 2 815 429 281 98 35 chr9 30187342 30187939 -93888233 + L1M4 LINE L1 2993 3714 -2426 2 815 439 326 146 36 chr9 30188018 30188386 -93887786 + L1M4 LINE L1 3819 4230 -1916 2 815 1345 247 129 11 chr9 30188630 30189002 -93887170 - MTD LTR MaLR 0 419 4 2 815 459 0 0 0 chr9 30190133 30190184 -93885988 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 815 297 274 95 26 chr9 30190619 30190735 -93885437 - PB1 SINE Alu 0 127 4 2 815 306 0 0 0 chr9 30190788 30190822 -93885350 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 815 6472 131 35 14 chr9 30190906 30192129 -93884043 + Lx3C LINE L1 5484 6745 -231 2 815 184 291 0 52 chr9 30192946 30193004 -93883168 + L3 LINE CR1 137 191 -4298 2 815 204 307 9 47 chr9 30193227 30193333 -93882839 - MIRc SINE MIR -122 146 45 2 815 270 294 9 35 chr9 30194086 30194199 -93881973 + CT-rich Low_complexity Low_complexity 5 114 0 2 815 774 244 83 25 chr9 30194314 30194554 -93881618 + MLT1A0 LTR MaLR 8 261 -104 2 815 2084 246 58 14 chr9 30194776 30195466 -93880706 + L1_Rod LINE L1 4811 5530 -317 2 815 30458 79 21 28 chr9 30195501 30197158 -93879014 - L1Md_F2 LINE L1 -1 6581 4915 2 815 228 266 50 60 chr9 30197158 30197258 -93878914 + MER72B LTR ERV1 280 378 -390 2 815 30458 79 21 28 chr9 30197258 30201700 -93874472 - L1Md_F2 LINE L1 -1 4914 442 2 815 6169 113 52 17 chr9 30201705 30202867 -93873305 - Lx LINE L1 0 6654 5452 2 815 2258 306 91 48 chr9 30202867 30204687 -93871485 + Lx9 LINE L1 5532 7622 -22 2 815 28 0 0 0 chr9 30204708 30204736 -93871436 + AT_rich Low_complexity Low_complexity 1 28 0 2 815 295 330 99 86 chr9 30206714 30206946 -93869226 - MIR SINE MIR -21 241 7 2 815 1016 185 46 107 chr9 30207754 30208099 -93868073 - Lx7 LINE L1 0 7696 7373 2 815 420 152 76 0 chr9 30208127 30208219 -93867953 - Lx6 LINE L1 -670 6790 6692 2 815 6320 204 84 20 chr9 30208393 30209396 -93866776 - Lx7 LINE L1 -416 7280 6176 2 815 423 0 0 0 chr9 30209396 30209443 -93866729 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 815 6320 171 45 17 chr9 30209443 30210439 -93865733 - Lx7 LINE L1 -1521 6175 5173 2 815 2667 178 61 74 chr9 30210449 30211432 -93864740 - Lx7 LINE L1 -4301 1579 608 2 815 245 274 104 10 chr9 30211432 30211528 -93864644 - MamGypLTR2 LTR Gypsy -892 297 193 2 815 259 150 0 0 chr9 30211528 30211568 -93864604 - Lx7 LINE L1 -7441 287 248 2 815 297 211 12 53 chr9 30211592 30211698 -93864474 - Lx7 LINE L1 -7072 656 584 2 815 612 224 148 0 chr9 30211958 30212168 -93864004 + L1_Mur3 LINE L1 4839 5079 -801 2 815 757 249 48 40 chr9 30212453 30212899 -93863273 + L1MC1 LINE L1 5184 5639 -694 2 815 741 222 26 71 chr9 30212924 30213029 -93863143 - B1_Mur1 SINE Alu -1 148 48 2 815 1465 236 35 68 chr9 30213029 30213547 -93862625 - RLTR16 LTR ERVK -4 501 1 2 815 741 222 26 71 chr9 30213547 30213596 -93862576 - B1_Mur1 SINE Alu -102 47 1 2 815 468 249 79 23 chr9 30213603 30213780 -93862392 + L1MC1 LINE L1 5638 5824 -509 2 815 271 333 10 10 chr9 30213978 30214075 -93862097 + PB1D10 SINE Alu 21 117 0 2 815 663 329 97 7 chr9 30214087 30214540 -93861632 + L1MC1 LINE L1 5821 6314 -19 2 815 289 340 9 9 chr9 30215267 30215377 -93860795 + MER5B DNA MER1_type 1 110 -68 2 815 399 182 61 0 chr9 30215743 30215809 -93860363 + ID SINE ID 4 73 -151 2 815 378 0 0 0 chr9 30215811 30215853 -93860319 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 815 292 259 25 0 chr9 30215878 30215959 -93860213 + MER5A1 DNA MER1_type 44 126 -40 2 815 325 119 29 29 chr9 30216068 30216137 -93860035 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3 815 16209 6 0 1 chr9 30216184 30218096 -93858076 + L1Md_A LINE L1 3676 5586 -297 3 815 8989 3 2 0 chr9 30218096 30219090 -93857082 + L1Md_A LINE L1 5587 6582 0 3 815 22 35 0 0 chr9 30219146 30219175 -93856997 + AT_rich Low_complexity Low_complexity 1 29 0 3 815 1240 262 74 30 chr9 30219399 30219969 -93856203 - L1M5 LINE L1 -1019 5127 4533 3 815 21 0 0 0 chr9 30220375 30220396 -93855776 + AT_rich Low_complexity Low_complexity 1 21 0 3 815 216 0 0 0 chr9 30220444 30220468 -93855704 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 3 815 215 312 18 150 chr9 30220845 30220958 -93855214 + B4A SINE B4 66 163 -129 3 815 210 273 0 206 chr9 30220885 30220982 -93855190 + B1_Mur2 SINE Alu 21 97 -52 3 815 333 0 0 0 chr9 30221062 30221099 -93855073 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 815 180 0 0 0 chr9 30221099 30221118 -93855054 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 815 432 0 0 0 chr9 30221118 30221165 -93855007 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 815 309 242 255 53 chr9 30221191 30221399 -93854773 + L1ME1 LINE L1 1352 1601 -4799 3 815 839 254 109 18 chr9 30221473 30221825 -93854347 - MTD LTR MaLR -14 405 1 3 815 725 329 122 19 chr9 30221838 30222366 -93853806 + L1ME1 LINE L1 1734 2336 -4064 3 815 21 0 0 0 chr9 30222366 30222387 -93853785 + AT_rich Low_complexity Low_complexity 1 21 0 3 815 725 329 122 19 chr9 30222387 30222420 -93853752 + L1ME1 LINE L1 2337 2375 -4025 3 815 301 156 31 0 chr9 30222831 30222895 -93853277 + MTC LTR MaLR 1 66 -355 3 815 510 320 27 7 chr9 30222926 30223074 -93853098 + MER70B LTR ERVL 230 380 -198 3 815 234 0 0 0 chr9 30223091 30223117 -93853055 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 815 253 310 8 74 chr9 30223406 30223528 -93852644 + PB1 SINE Alu 4 117 -10 3 815 22 70 0 0 chr9 30223539 30223582 -93852590 + AT_rich Low_complexity Low_complexity 1 43 0 3 815 334 288 72 27 chr9 30223876 30224062 -93852110 + ERVL-B4-int LTR ERVL 329 550 -5207 3 815 866 283 70 71 chr9 30224067 30224582 -93851590 + L1MA4 LINE L1 5396 5918 -382 3 815 279 0 0 0 chr9 30224596 30224627 -93851545 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 815 1796 299 37 19 chr9 30224787 30225458 -93850714 + ERVL-B4-int LTR ERVL 2096 2778 -2936 3 815 669 316 40 0 chr9 30225679 30225907 -93850265 + ERVL-B4-int LTR ERVL 3139 3375 -2382 3 815 540 346 25 4 chr9 30226012 30226250 -93849922 + ERVL-B4-int LTR ERVL 3468 3710 -2004 3 815 225 0 0 0 chr9 30226250 30226275 -93849897 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 815 768 72 60 12 chr9 30226289 30226457 -93849715 + (TCTCTG)n Simple_repeat Simple_repeat 3 178 0 3 815 539 246 38 7 chr9 30226486 30226636 -93849536 + ERVL-B4-int LTR ERVL 3702 3944 -1813 3 815 1101 66 0 0 chr9 30226652 30226788 -93849384 + B1_Mus1 SINE Alu 1 136 -12 3 815 300 27 0 0 chr9 30226789 30226826 -93849346 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 815 321 275 121 14 chr9 30226843 30227102 -93849070 + L1ME1 LINE L1 5371 5656 -696 3 815 552 307 7 0 chr9 30227109 30227262 -93848910 + B3A SINE B2 1 154 -44 3 815 309 26 0 0 chr9 30227262 30227300 -93848872 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 815 461 300 63 20 chr9 30227528 30227783 -93848389 + L1ME1 LINE L1 5873 6138 -214 3 815 241 206 56 42 chr9 30227851 30227922 -93848250 + L1ME1 LINE L1 6268 6339 -13 3 815 1072 191 27 18 chr9 30228119 30228343 -93847829 - URR1A DNA MER1_type 0 226 1 3 815 284 257 53 74 chr9 30228899 30229088 -93847084 - L1MEd LINE L1 -4865 1254 1070 3 815 506 298 146 31 chr9 30230070 30230420 -93845752 + MLT1B LTR MaLR 1 390 0 3 815 270 304 98 0 chr9 30230990 30231082 -93845090 + ID_B1 SINE B4 84 184 -40 3 815 275 283 136 39 chr9 30231082 30231093 -93845079 + PB1D10 SINE Alu 3 115 -5 3 815 565 306 144 6 chr9 30231277 30231624 -93844548 + MLT1D LTR MaLR 105 499 -6 3 815 249 275 0 42 chr9 30232197 30232269 -93843903 - B1F SINE Alu -1 148 80 3 815 239 91 0 96 chr9 30233546 30233619 -93842553 + T-rich Low_complexity Low_complexity 3 68 0 3 815 246 218 18 0 chr9 30234270 30234325 -93841847 + G-rich Low_complexity Low_complexity 4 59 0 3 815 227 122 0 20 chr9 30237046 30237096 -93839076 + (TGGGGG)n Simple_repeat Simple_repeat 1 49 0 3 815 945 219 40 0 chr9 30237247 30237448 -93838724 - B3 SINE B2 -1 215 7 3 815 23 68 0 0 chr9 30237656 30237700 -93838472 + AT_rich Low_complexity Low_complexity 1 44 0 3 815 348 24 0 0 chr9 30239547 30239588 -93836584 + (A)n Simple_repeat Simple_repeat 1 41 0 3 815 310 288 128 26 chr9 30240510 30240717 -93835455 - MIRb SINE MIR -34 228 1 3 815 264 200 0 0 chr9 30241471 30241536 -93834636 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 3 815 290 182 136 0 chr9 30241716 30241804 -93834368 - B1F SINE Alu -8 141 42 3 815 515 205 130 8 chr9 30241969 30242092 -93834080 - B4A SINE B4 -16 276 139 3 815 1487 73 16 0 chr9 30242696 30242887 -93833285 - B2_Mm2 SINE B2 0 195 2 3 815 267 272 25 0 chr9 30245403 30245484 -93830688 + CT-rich Low_complexity Low_complexity 2 84 0 3 815 248 269 31 78 chr9 30246061 30246190 -93829982 + MTD LTR MaLR 3 125 -294 3 815 1182 66 0 36 chr9 30246511 30246732 -93829440 + (CATA)n Simple_repeat Simple_repeat 1 212 0 3 815 2573 194 91 34 chr9 30248132 30248869 -93827303 - RLTR40 LTR ERVK -37 780 2 3 815 307 304 21 69 chr9 30249302 30249447 -93826725 + MER20 DNA MER1_type 24 161 -58 3 815 203 204 23 0 chr9 30250615 30250659 -93825513 + MIRc SINE MIR 115 159 -109 3 815 257 294 9 64 chr9 30255383 30255492 -93820680 + L2c LINE L2 3279 3381 -6 3 815 446 257 0 34 chr9 30259052 30259169 -93817003 - PB1D10 SINE Alu 0 117 5 3 815 424 149 78 10 chr9 30259181 30259283 -93816889 - PB1D7 SINE Alu -1 119 11 3 815 236 308 28 19 chr9 30259201 30259307 -93816865 - ID_B1 SINE B4 -48 176 70 3 815 678 238 7 7 chr9 30260411 30260563 -93815609 - ID_B1 SINE B4 -1 223 72 3 815 1354 92 38 0 chr9 30261404 30261589 -93814583 + B2_Mm2 SINE B2 1 192 -3 3 815 1081 53 8 0 chr9 30261607 30261740 -93814432 + B1_Mm SINE Alu 1 134 -13 3 815 573 15 0 0 chr9 30261741 30261807 -93814365 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 815 216 346 153 16 chr9 30262171 30262479 -93813693 + L3 LINE CR1 3067 3416 -1073 3 815 294 29 0 0 chr9 30262479 30262514 -93813658 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 815 375 41 0 0 chr9 30262514 30262562 -93813610 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 815 193 308 12 71 chr9 30263007 30263091 -93813081 + L3 LINE CR1 4194 4272 -217 3 815 805 237 89 5 chr9 30263480 30263671 -93812501 + B3 SINE B2 4 210 -6 3 815 27 0 0 0 chr9 30263700 30263727 -93812445 + AT_rich Low_complexity Low_complexity 1 27 0 3 815 206 296 14 0 chr9 30264497 30264568 -93811604 + (CATA)n Simple_repeat Simple_repeat 4 75 0 3 815 483 255 131 35 chr9 30264783 30264982 -93811190 + MER20 DNA MER1_type 2 219 0 3 815 207 100 0 0 chr9 30265098 30265128 -93811044 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 3 815 274 296 48 48 chr9 30266018 30266121 -93810051 + PB1D10 SINE Alu 1 103 -17 3 815 332 292 68 63 chr9 30266221 30266411 -93809761 + B3A SINE B2 2 192 -6 3 815 1045 208 24 0 chr9 30266610 30266817 -93809355 + B3 SINE B2 1 212 -4 3 815 409 339 92 46 chr9 30269440 30269768 -93806404 - MLT1A0 LTR MaLR -21 344 2 3 815 243 0 0 0 chr9 30270434 30270461 -93805711 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 815 24 32 0 0 chr9 30274280 30274311 -93801861 + AT_rich Low_complexity Low_complexity 1 31 0 3 815 813 295 99 22 chr9 30274608 30275017 -93801155 - L1MB1 LINE L1 -199 5981 5533 3 815 403 354 57 0 chr9 30276036 30276228 -93799944 - MER58A DNA MER1_type -18 206 4 3 815 249 236 38 152 chr9 30276245 30276350 -93799822 - MER5A1 DNA MER1_type -1 165 73 3 815 486 280 62 31 chr9 30276854 30277016 -93799156 + B3A SINE B2 4 170 -28 3 101 244 263 94 66 chr9 30277534 30277640 -93798532 - PB1D10 SINE Alu -7 110 2 3 816 578 240 97 53 chr9 30277941 30278093 -93798079 + B3 SINE B2 1 150 -66 3 816 423 0 0 0 chr9 30278093 30278140 -93798032 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 816 578 240 97 53 chr9 30278140 30278194 -93797978 + B3 SINE B2 151 216 0 3 816 208 206 0 0 chr9 30278939 30278973 -93797199 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 3 816 293 257 40 0 chr9 30279267 30279341 -93796831 - B1F SINE Alu -58 91 15 3 816 1701 147 18 32 chr9 30282564 30282902 -93793270 - RLTR15 LTR ERVK -26 333 1 3 816 185 348 36 60 chr9 30283710 30283878 -93792294 + MIRb SINE MIR 73 236 -32 3 816 245 313 163 25 chr9 30286161 30286400 -93789772 + L2a LINE L2 2977 3248 -178 3 816 461 191 0 9 chr9 30286549 30286655 -93789517 + (TA)n Simple_repeat Simple_repeat 2 106 0 3 816 500 297 81 18 chr9 30286655 30286878 -93789294 - L1MA7 LINE L1 -118 6173 5937 3 816 183 250 0 0 chr9 30289176 30289228 -93786944 + CT-rich Low_complexity Low_complexity 5 56 0 3 816 1644 119 176 4 chr9 30289464 30289743 -93786429 + ORR1A2 LTR MaLR 1 327 0 3 816 940 282 47 13 chr9 30290073 30290371 -93785801 - MLT1A0 LTR MaLR -55 310 3 3 816 22 0 0 0 chr9 30291645 30291667 -93784505 + AT_rich Low_complexity Low_complexity 1 22 0 3 816 432 0 0 0 chr9 30292828 30292876 -93783296 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 816 473 252 104 0 chr9 30292882 30293017 -93783155 - B3 SINE B2 -67 149 1 3 816 5041 163 12 1 chr9 30293056 30293871 -93782301 + Lx5 LINE L1 6224 7047 -3 3 816 1107 214 19 0 chr9 30293928 30294138 -93782034 + B3 SINE B2 1 214 -2 3 816 574 320 22 6 chr9 30294802 30294981 -93781191 - RMER30 DNA MER1_type -1 201 20 3 816 225 380 7 42 chr9 30294998 30295141 -93781031 + Charlie12 DNA MER1_type 395 532 -2341 3 816 204 40 0 0 chr9 30295228 30295253 -93780919 + (TATG)n Simple_repeat Simple_repeat 2 26 0 3 816 539 256 276 27 chr9 30295293 30295518 -93780654 - B4A SINE B4 -7 285 5 3 816 1307 282 116 79 chr9 30295600 30296473 -93779699 + Charlie12 DNA MER1_type 624 1528 -1345 3 816 1327 203 112 20 chr9 30296483 30296839 -93779333 - MTD LTR MaLR -13 406 18 4 816 1699 261 25 70 chr9 30296861 30297503 -93778669 + Charlie12 DNA MER1_type 1534 2146 -727 3 816 576 242 26 7 chr9 30298092 30298246 -93777926 - B3 SINE B2 0 216 60 4 816 249 169 36 0 chr9 30298249 30298332 -93777840 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 816 799 233 25 20 chr9 30298402 30298599 -93777573 - B3A SINE B2 0 198 1 4 816 768 221 14 66 chr9 30298601 30298814 -93777358 + Charlie12 DNA MER1_type 2193 2394 -479 3 816 367 294 31 41 chr9 30300214 30300366 -93775806 + Lx5 LINE L1 6867 6997 -53 4 816 207 0 0 0 chr9 30300588 30300611 -93775561 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 816 2140 166 19 5 chr9 30301049 30301418 -93774754 + ORR1D1 LTR MaLR 1 374 0 4 816 5617 189 77 19 chr9 30301418 30302713 -93773459 + ORR1D1-int LTR MaLR 1 1370 0 4 816 1940 160 49 35 chr9 30302713 30303082 -93773090 + ORR1D1 LTR MaLR 1 374 0 4 816 378 169 14 0 chr9 30303280 30303351 -93772821 + ORR1D1 LTR MaLR 183 254 -120 4 816 4082 109 33 0 chr9 30303681 30304261 -93771911 - MT2B LTR ERVL 0 601 3 4 816 477 266 126 28 chr9 30304716 30305041 -93771131 - L1MC4a LINE L1 -11 7871 7538 4 816 678 58 0 0 chr9 30305311 30305398 -93770774 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 4 816 573 329 25 6 chr9 30305403 30305533 -93770639 + RSINE1 SINE B4 1 129 -36 4 816 362 74 19 0 chr9 30305533 30305587 -93770585 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 816 573 329 25 6 chr9 30305587 30305618 -93770554 + RSINE1 SINE B4 130 164 -1 4 816 342 0 0 0 chr9 30306046 30306084 -93770088 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 816 2492 129 56 0 chr9 30306923 30307296 -93768876 - ORR1B1 LTR MaLR 0 394 1 4 816 412 363 7 0 chr9 30307484 30307630 -93768542 + MER45A DNA Tip100 25 171 -7 4 816 265 289 75 70 chr9 30307644 30307871 -93768301 + L3 LINE CR1 4191 4418 -71 4 816 251 326 97 0 chr9 30308145 30308289 -93767883 - MER121 Unknown Unknown -101 311 154 4 816 769 274 23 14 chr9 30308313 30308528 -93767644 + ID_B1 SINE B4 5 221 -3 4 816 243 146 0 0 chr9 30309980 30310021 -93766151 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 816 3588 171 68 44 chr9 30310470 30311073 -93765099 + RMER1A Other Other 289 882 -148 4 816 279 0 0 0 chr9 30311073 30311104 -93765068 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 816 3588 171 68 44 chr9 30311104 30311205 -93764967 + RMER1A Other Other 883 1009 -21 4 816 714 271 0 0 chr9 30311274 30311418 -93764754 - RSINE1 SINE B4 -21 144 1 4 816 975 299 65 89 chr9 30312313 30312838 -93763334 + MLT2B2 LTR ERVL 1 512 -3 4 816 25 51 0 0 chr9 30313573 30313612 -93762560 + AT_rich Low_complexity Low_complexity 1 39 0 4 816 283 351 0 0 chr9 30313841 30313935 -93762237 + ID_B1 SINE B4 79 172 -52 4 816 402 293 0 0 chr9 30313859 30313958 -93762214 + PB1D10 SINE Alu 16 114 -3 4 816 1162 182 26 52 chr9 30313976 30314208 -93761964 - URR1A DNA MER1_type 0 226 1 4 816 493 262 75 0 chr9 30314457 30314617 -93761555 - MER58A DNA MER1_type 0 224 53 4 816 279 79 0 0 chr9 30314899 30314937 -93761235 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 816 2834 73 2 30 chr9 30314973 30315370 -93760802 - L1Md_F2 LINE L1 -1 6581 6196 4 816 469 269 231 46 chr9 30315962 30316200 -93759972 + B4A SINE B4 3 284 -8 4 816 192 40 0 0 chr9 30316246 30316271 -93759901 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 816 595 120 31 16 chr9 30317139 30317266 -93758906 + GA-rich Low_complexity Low_complexity 3 131 0 4 816 1513 0 6 6 chr9 30317270 30317448 -93758724 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 816 450 0 0 0 chr9 30317449 30317499 -93758673 + (GAAA)n Simple_repeat Simple_repeat 1 50 0 4 816 314 373 54 76 chr9 30317741 30318017 -93758155 + LTR16E1 LTR ERVL 268 537 -1 4 816 390 91 0 0 chr9 30318599 30318654 -93757518 + (T)n Simple_repeat Simple_repeat 1 55 0 4 816 459 303 28 0 chr9 30319457 30319566 -93756606 + B1F SINE Alu 1 112 -37 4 816 375 23 0 0 chr9 30319570 30319614 -93756558 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 816 234 0 0 0 chr9 30319614 30319639 -93756533 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 816 440 289 183 48 chr9 30319646 30320235 -93755937 + L1M4c LINE L1 1075 1743 -4796 4 816 283 230 76 42 chr9 30320278 30320396 -93755776 + L1M4c LINE L1 2514 2635 -3998 4 816 372 43 0 0 chr9 30321322 30321368 -93754804 + (A)n Simple_repeat Simple_repeat 1 46 0 4 816 368 295 158 4 chr9 30321376 30321655 -93754517 + L1M4c LINE L1 2706 3027 -3510 4 816 271 244 73 8 chr9 30321803 30321927 -93754245 + (TATATG)n Simple_repeat Simple_repeat 3 134 0 4 816 307 244 47 19 chr9 30321968 30322096 -93754076 + L1M4c LINE L1 3128 3258 -3273 4 816 1697 277 69 25 chr9 30322111 30322704 -93753468 - Lx8 LINE L1 -9 7464 6846 4 816 987 53 0 0 chr9 30322708 30322839 -93753333 + B1_Mm SINE Alu 17 147 0 4 816 372 133 0 0 chr9 30322839 30322899 -93753273 + (A)n Simple_repeat Simple_repeat 1 60 0 4 816 1761 289 17 2 chr9 30322907 30323375 -93752797 - Lx8 LINE L1 -646 6827 6353 4 816 276 308 53 12 chr9 30323393 30323564 -93752608 + L1M4c LINE L1 3255 3432 -3099 4 816 213 306 0 0 chr9 30323573 30323622 -93752550 + ID4_ SINE ID 12 60 -23 4 816 612 273 110 43 chr9 30323644 30323989 -93752183 + RLTR9A LTR ERVK 1 368 0 4 816 422 300 18 0 chr9 30324513 30324723 -93751449 + B4 SINE B4 3 288 -4 4 816 553 14 27 0 chr9 30324770 30324844 -93751328 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 816 216 373 50 50 chr9 30325157 30325377 -93750795 + L2b LINE L2 2932 3151 -224 4 816 5235 127 7 51 chr9 30325656 30326525 -93749647 - Lx2 LINE L1 0 6997 6167 4 816 342 0 0 0 chr9 30326556 30326594 -93749578 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 816 241 287 63 11 chr9 30327350 30327445 -93748727 - MIR SINE MIR -84 178 79 4 816 289 212 184 9 chr9 30327653 30327711 -93748461 - MER121 Unknown Unknown -123 289 220 4 816 342 0 0 0 chr9 30327711 30327749 -93748423 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 816 289 212 184 9 chr9 30327749 30327804 -93748368 - MER121 Unknown Unknown -193 219 156 4 816 200 167 0 0 chr9 30328989 30329019 -93747153 + polypyrimidine Low_complexity Low_complexity 3 32 0 4 816 520 234 16 8 chr9 30329024 30329149 -93747023 - L1MA5 LINE L1 0 6300 6175 4 816 288 278 0 53 chr9 30331043 30331119 -93745053 + MTE2b LTR MaLR 1 72 -307 4 816 321 356 46 30 chr9 30333409 30333646 -93742526 - L3 LINE CR1 -127 4362 4122 4 816 327 127 0 0 chr9 30333973 30334036 -93742136 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 4 816 928 258 5 19 chr9 30335607 30335820 -93740352 - B3 SINE B2 -6 210 1 4 816 218 254 0 42 chr9 30336221 30336340 -93739832 + GA-rich Low_complexity Low_complexity 3 116 0 4 816 980 246 56 46 chr9 30336606 30336891 -93739281 + Lx7 LINE L1 7020 7307 -389 4 816 279 0 0 0 chr9 30336902 30336933 -93739239 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 816 209 311 0 0 chr9 30336954 30337044 -93739128 + T-rich Low_complexity Low_complexity 1 90 0 4 816 287 160 70 33 chr9 30337044 30337147 -93739025 + Lx7 LINE L1 7358 7442 -31 4 816 184 395 24 54 chr9 30338898 30339064 -93737108 - MIRb SINE MIR -76 192 32 4 816 761 131 197 27 chr9 30339937 30340125 -93736047 - URR1B DNA MER1_type 0 225 6 4 816 347 276 104 58 chr9 30342462 30342635 -93733537 + MER20 DNA MER1_type 35 215 -4 4 816 474 75 0 0 chr9 30343036 30343103 -93733069 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 816 1342 289 99 24 chr9 30345017 30345520 -93730652 - MLT2B3 LTR ERVL -13 541 1 4 816 235 296 36 24 chr9 30346802 30346885 -93729287 - B1F1 SINE Alu -1 148 65 4 816 251 250 45 56 chr9 30346851 30346940 -93729232 - B1F SINE Alu -22 127 40 4 816 532 291 130 64 chr9 30347264 30347594 -93728578 + MLT1A LTR MaLR 14 374 0 4 816 248 248 68 0 chr9 30347742 30347834 -93728338 + B1F SINE Alu 17 115 -34 4 816 23 0 0 0 chr9 30347923 30347946 -93728226 + AT_rich Low_complexity Low_complexity 1 23 0 4 816 359 365 0 0 chr9 30347966 30348070 -93728102 - RSINE1 SINE B4 -14 151 48 4 816 400 331 41 24 chr9 30348082 30348252 -93727920 - B3A SINE B2 -20 178 6 4 816 252 143 0 0 chr9 30348269 30348311 -93727861 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 4 816 245 285 111 66 chr9 30348647 30348767 -93727405 + RMER10A LTR ERVL 18 137 -305 4 816 207 0 0 0 chr9 30348767 30348790 -93727382 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 4 816 245 285 111 66 chr9 30348790 30349048 -93727124 + RMER10A LTR ERVL 138 413 -29 4 816 201 195 0 0 chr9 30349428 30349469 -93726703 + CT-rich Low_complexity Low_complexity 2 42 0 4 816 213 45 42 62 chr9 30349526 30349574 -93726598 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 816 1137 89 7 0 chr9 30349578 30349724 -93726448 - B1_Mus2 SINE Alu 0 147 1 4 816 640 210 7 0 chr9 30349754 30349873 -93726299 - RMER1B Other Other -9 1057 938 4 816 1218 67 0 17 chr9 30349873 30350054 -93726118 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 4 816 640 210 7 0 chr9 30350054 30350072 -93726100 - RMER1B Other Other -129 937 920 4 816 291 54 0 0 chr9 30350074 30350111 -93726061 + (GAAAA)n Simple_repeat Simple_repeat 1 37 0 4 816 221 225 0 0 chr9 30350111 30350151 -93726021 + G-rich Low_complexity Low_complexity 4 43 0 4 816 770 151 6 39 chr9 30350152 30350331 -93725841 + GA-rich Low_complexity Low_complexity 6 178 0 4 816 475 54 0 75 chr9 30350331 30350411 -93725761 + (GGGAA)n Simple_repeat Simple_repeat 4 77 0 4 816 897 10 0 0 chr9 30350415 30350517 -93725655 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 4 816 2050 187 15 32 chr9 30350517 30350916 -93725256 - RMER1B Other Other -129 937 546 4 816 245 292 103 86 chr9 30351263 30351555 -93724617 + L2 LINE L2 2429 2725 -694 4 816 429 70 0 0 chr9 30352032 30352089 -93724083 + (TGG)n Simple_repeat Simple_repeat 1 57 0 4 816 337 89 15 15 chr9 30352450 30352518 -93723654 + (TTTTTG)n Simple_repeat Simple_repeat 5 72 0 4 816 435 38 0 0 chr9 30352666 30352719 -93723453 + (CATA)n Simple_repeat Simple_repeat 4 56 0 4 816 194 91 30 0 chr9 30352731 30352764 -93723408 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 816 314 23 23 0 chr9 30352805 30352848 -93723324 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 816 740 290 43 64 chr9 30353418 30353764 -93722408 - MLT1A LTR MaLR -17 357 19 4 816 3641 41 5 5 chr9 30354078 30354524 -93721648 - L1Md_F3 LINE L1 -2 6582 6137 4 816 2155 54 0 0 chr9 30354524 30354785 -93721387 + L1Md_T LINE L1 5884 6144 -438 4 816 800 234 64 5 chr9 30355658 30355860 -93720312 + B3 SINE B2 3 216 0 5 816 231 348 8 17 chr9 30356226 30356346 -93719826 + BLACKJACK DNA AcHobo 271 389 -2555 5 816 266 282 179 101 chr9 30356565 30356656 -93719516 + MLT1A LTR MaLR 1 91 -283 5 816 897 170 0 0 chr9 30356656 30356797 -93719375 + B1_Mur1 SINE Alu 5 145 -4 5 816 266 282 179 101 chr9 30356797 30357052 -93719120 + MLT1A LTR MaLR 92 374 0 5 816 291 219 25 54 chr9 30357614 30357713 -93718459 + MIRc SINE MIR 60 154 -54 5 816 767 167 0 7 chr9 30358205 30358281 -93717891 + polypurine Low_complexity Low_complexity 3 78 0 5 816 1239 67 0 16 chr9 30358281 30358463 -93717709 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 5 816 767 167 0 7 chr9 30358463 30358504 -93717668 + polypurine Low_complexity Low_complexity 79 119 0 5 816 1170 112 0 0 chr9 30358504 30358682 -93717490 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 816 767 167 0 7 chr9 30358682 30358714 -93717458 + polypurine Low_complexity Low_complexity 120 151 0 5 816 1277 78 6 0 chr9 30358714 30358893 -93717279 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 816 620 196 14 48 chr9 30359147 30359292 -93716880 - L1_Rod LINE L1 -92 5755 5616 5 816 385 332 146 17 chr9 30359544 30360016 -93716156 + Charlie2b DNA MER1_type 1684 2216 -566 5 816 315 0 0 0 chr9 30360131 30360166 -93716006 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 816 299 269 13 13 chr9 30360276 30360355 -93715817 + L2b LINE L2 3294 3372 -3 5 816 198 0 0 0 chr9 30360739 30360761 -93715411 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 816 297 0 0 0 chr9 30360761 30360793 -93715379 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 816 232 383 23 0 chr9 30361543 30361671 -93714501 - MLT1A0 LTR MaLR -161 204 74 5 816 25 65 0 0 chr9 30361805 30361851 -93714321 + AT_rich Low_complexity Low_complexity 1 46 0 5 816 225 0 0 0 chr9 30361864 30361889 -93714283 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 816 246 244 55 31 chr9 30361889 30362016 -93714156 + Lx8 LINE L1 5718 5847 0 5 816 292 191 57 113 chr9 30362398 30362522 -93713650 - Lx8 LINE L1 -4 7469 7353 5 816 38 51 0 0 chr9 30362522 30362581 -93713591 + AT_rich Low_complexity Low_complexity 1 59 0 5 816 696 221 96 18 chr9 30362622 30362788 -93713384 - B3A SINE B2 -15 183 5 5 816 4143 266 62 27 chr9 30362788 30363997 -93712175 - Lx8 LINE L1 -120 7353 6102 5 816 1240 160 191 7 chr9 30364242 30364519 -93711653 - ORR1A4 LTR MaLR 0 346 19 5 816 8761 144 61 156 chr9 30364527 30366179 -93709993 - ORR1A4-int LTR MaLR 0 1963 494 5 816 1378 94 21 0 chr9 30366179 30366370 -93709802 + B2_Mm2 SINE B2 1 195 0 5 816 8761 144 61 156 chr9 30366370 30366885 -93709287 - ORR1A4-int LTR MaLR -1470 493 1 5 816 1923 152 55 0 chr9 30366885 30367195 -93708977 - ORR1A4 LTR MaLR 0 329 3 5 816 461 17 17 0 chr9 30367205 30367263 -93708909 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 816 308 295 8 83 chr9 30367263 30367396 -93708776 + Lx8 LINE L1 6366 6488 -985 5 816 282 262 38 83 chr9 30368216 30368349 -93707823 - L1M2 LINE L1 -1346 5499 5373 5 816 652 293 107 43 chr9 30368353 30368727 -93707445 - MTD LTR MaLR -14 405 8 5 816 505 264 28 33 chr9 30368732 30368947 -93707225 - L1M2 LINE L1 -1456 5386 5173 5 816 441 242 10 0 chr9 30368958 30369057 -93707115 - B3 SINE B2 -106 110 11 5 816 386 326 105 33 chr9 30369105 30369541 -93706631 - L1M2 LINE L1 -3941 2647 2153 5 816 353 229 61 30 chr9 30370002 30370101 -93706071 + Lx9 LINE L1 7052 7153 -491 5 816 502 292 39 55 chr9 30370366 30370547 -93705625 + B4A SINE B4 8 185 -107 5 816 354 274 113 0 chr9 30370555 30370679 -93705493 + RLTR40 LTR ERVK 641 778 -39 5 816 1931 225 5 19 chr9 30370692 30371113 -93705059 + MTD LTR MaLR 5 419 0 5 816 662 305 54 33 chr9 30371194 30371569 -93704603 + RLTR26 LTR ERVK 14 417 -225 5 816 448 261 93 7 chr9 30371880 30372019 -93704153 + L1MD2 LINE L1 5497 5647 -712 5 816 439 315 66 24 chr9 30372035 30372201 -93703971 + MER20 DNA MER1_type 8 180 -39 5 816 608 260 123 41 chr9 30372248 30372517 -93703655 + L1MD2 LINE L1 5651 5941 -418 5 816 975 18 0 0 chr9 30373334 30373447 -93702725 + (GAA)n Simple_repeat Simple_repeat 2 114 0 5 816 186 133 0 0 chr9 30373447 30373477 -93702695 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 816 198 0 0 0 chr9 30375335 30375357 -93700815 + (T)n Simple_repeat Simple_repeat 1 22 0 5 816 369 0 0 0 chr9 30375635 30375676 -93700496 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 816 533 279 0 0 chr9 30375677 30375799 -93700373 - RSINE1 SINE B4 -41 124 3 5 816 1811 178 92 28 chr9 30375923 30375987 -93700185 - RLTR11A LTR ERVK 0 527 456 5 816 465 19 0 0 chr9 30375987 30376041 -93700131 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 816 1811 175 83 30 chr9 30376041 30376455 -93699717 - RLTR11A LTR ERVK -72 456 2 5 816 29 0 0 0 chr9 30377127 30377156 -93699016 + AT_rich Low_complexity Low_complexity 1 29 0 5 816 1481 41 0 0 chr9 30377158 30377330 -93698842 + L1Md_F2 LINE L1 6313 6484 -98 5 816 234 0 0 0 chr9 30377368 30377394 -93698778 + (A)n Simple_repeat Simple_repeat 1 26 0 5 816 207 0 0 0 chr9 30378058 30378081 -93698091 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 816 529 231 27 62 chr9 30378091 30378546 -93697626 - RMER17C LTR ERVK -52 358 1 5 816 24 53 0 0 chr9 30379113 30379151 -93697021 + AT_rich Low_complexity Low_complexity 1 38 0 5 816 368 292 22 104 chr9 30379197 30379331 -93696841 + RSINE1 SINE B4 43 165 0 5 816 185 83 0 27 chr9 30379331 30379368 -93696804 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 816 210 318 70 19 chr9 30379866 30379995 -93696177 + MIR SINE MIR 58 189 -79 5 816 242 266 62 46 chr9 30380538 30380668 -93695504 - L1MC5 LINE L1 -44 7917 7786 5 816 202 216 0 0 chr9 30381020 30381057 -93695115 + CT-rich Low_complexity Low_complexity 4 40 0 5 816 285 143 82 0 chr9 30382722 30382771 -93693401 - L1M3 LINE L1 -488 5701 5649 5 816 691 316 61 65 chr9 30382769 30383246 -93692926 + L1MA9 LINE L1 5817 6291 -21 5 816 564 15 0 0 chr9 30383463 30383528 -93692644 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 816 1115 131 99 0 chr9 30385539 30385730 -93690442 - URR1A DNA MER1_type 0 226 17 5 816 420 71 0 0 chr9 30385739 30385795 -93690377 + (CATA)n Simple_repeat Simple_repeat 4 59 0 5 816 228 368 64 29 chr9 30390761 30390901 -93685271 + MIRb SINE MIR 7 151 -117 5 816 283 279 148 25 chr9 30391554 30391716 -93684456 + MLT1A LTR MaLR 189 370 -4 5 816 401 224 9 27 chr9 30392469 30392579 -93683593 + MT2A LTR ERVL 1 108 -425 5 816 1624 162 80 27 chr9 30392549 30392885 -93683287 + ORR1B1 LTR MaLR 41 394 0 5 816 539 249 88 77 chr9 30392885 30393229 -93682943 + MT2A LTR ERVL 66 554 -47 5 816 311 96 0 19 chr9 30393258 30393311 -93682861 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 816 31 26 0 0 chr9 30393473 30393511 -93682661 + AT_rich Low_complexity Low_complexity 1 38 0 5 816 425 262 7 60 chr9 30396922 30397072 -93679100 + B3 SINE B2 3 144 -72 5 816 330 26 0 0 chr9 30397074 30397113 -93679059 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 816 314 0 0 41 chr9 30397327 30397376 -93678796 + B1_Mur4 SINE Alu 103 149 -1 5 816 417 202 0 0 chr9 30399461 30399474 -93676698 + (TCTCTG)n Simple_repeat Simple_repeat 5 17 0 5 816 879 129 0 0 chr9 30399474 30399652 -93676520 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 816 417 202 0 0 chr9 30399652 30399737 -93676435 + (TCTCTG)n Simple_repeat Simple_repeat 4 88 0 5 816 1065 246 50 21 chr9 30399737 30400019 -93676153 - B4 SINE B4 -2 290 1 5 816 293 276 34 22 chr9 30400764 30400853 -93675319 - MER57A-int LTR ERV1 -293 5894 5805 5 816 219 36 0 0 chr9 30400864 30400892 -93675280 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 816 25 0 0 0 chr9 30400907 30400932 -93675240 + AT_rich Low_complexity Low_complexity 1 25 0 5 816 684 245 53 5 chr9 30401121 30401310 -93674862 + B3A SINE B2 1 198 0 5 816 1745 139 9 36 chr9 30401353 30401682 -93674490 - Lx5 LINE L1 -938 6112 5793 5 816 4173 215 54 43 chr9 30401684 30402597 -93673575 + Lx5 LINE L1 6100 7045 -5 5 816 2145 291 62 46 chr9 30402872 30404047 -93672125 + Lx9 LINE L1 5337 6545 -928 5 816 568 278 188 26 chr9 30404076 30404268 -93671904 + ID_B1 SINE B4 1 223 -1 5 816 4224 65 41 7 chr9 30404652 30405194 -93670978 - LTRIS2 LTR ERV1 0 564 5 5 816 360 0 0 0 chr9 30406744 30406784 -93669388 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 816 307 306 163 16 chr9 30406796 30406919 -93669253 - B3A SINE B2 -47 151 11 5 816 3452 129 20 82 chr9 30407360 30408044 -93668128 - RLTR26 LTR ERVK 0 642 1 5 816 217 305 10 78 chr9 30408105 30408208 -93667964 - BC1_Mm scRNA scRNA -51 101 6 5 12 906 288 123 12 chr9 30408527 30408868 -93667304 - MTEa LTR MaLR 0 379 1 5 817 867 295 190 26 chr9 30409059 30409753 -93666419 + L1ME1 LINE L1 5152 5947 -232 5 817 195 42 0 0 chr9 30410327 30410351 -93665821 + (TTG)n Simple_repeat Simple_repeat 3 26 0 5 817 656 177 6 0 chr9 30411050 30411225 -93664947 + GA-rich Low_complexity Low_complexity 2 177 0 5 817 4936 139 67 35 chr9 30411471 30412037 -93664135 + L1VL1 LINE L1 221 778 -5644 5 817 3603 18 0 0 chr9 30412037 30412433 -93663739 - MTA_Mm LTR MaLR 0 396 1 5 817 9360 33 2 1 chr9 30412433 30413530 -93662642 - MTA_Mm-int LTR MaLR 0 1098 1 5 817 3567 23 0 0 chr9 30413530 30413925 -93662247 - MTA_Mm LTR MaLR 0 396 2 5 817 4936 139 67 35 chr9 30413925 30414236 -93661936 + L1VL1 LINE L1 779 1126 -5296 5 817 18172 112 38 3 chr9 30414217 30417665 -93658507 + L1_Mus3 LINE L1 3063 6632 -6 5 817 180 111 0 0 chr9 30417673 30417700 -93658472 + (A)n Simple_repeat Simple_repeat 1 27 0 5 817 207 100 0 0 chr9 30418783 30418813 -93657359 + (TATG)n Simple_repeat Simple_repeat 2 31 0 5 817 485 156 0 10 chr9 30418901 30418998 -93657174 + (CATA)n Simple_repeat Simple_repeat 3 98 0 5 817 352 243 0 0 chr9 30419538 30419612 -93656560 + B4A SINE B4 3 76 -216 5 817 579 283 6 46 chr9 30419622 30419796 -93656376 + B3A SINE B2 16 182 -16 5 817 1314 80 34 6 chr9 30419812 30419988 -93656184 - B2_Mm2 SINE B2 -14 181 1 5 817 1154 198 188 64 chr9 30422520 30422577 -93653595 - MTD LTR MaLR 0 419 363 5 817 1155 44 0 0 chr9 30422577 30422714 -93653458 + B1_Mm SINE Alu 2 138 -9 6 817 1154 198 188 64 chr9 30422714 30423029 -93653143 - MTD LTR MaLR -57 362 1 5 817 1113 102 0 0 chr9 30423062 30423209 -93652963 - B1_Mus1 SINE Alu 0 148 2 6 817 386 164 177 26 chr9 30423223 30423336 -93652836 - Tigger5 DNA MER2_type -80 2326 2197 6 817 457 366 5 25 chr9 30423346 30423545 -93652627 - Tigger5 DNA MER2_type -2098 308 114 6 817 579 29 0 0 chr9 30423860 30423929 -93652243 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 817 601 279 71 113 chr9 30423933 30424241 -93651931 + MLT1A LTR MaLR 4 299 -75 6 817 614 58 11 0 chr9 30424241 30424328 -93651844 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 6 817 601 279 71 113 chr9 30424328 30424383 -93651789 + MLT1A LTR MaLR 300 352 -22 6 817 244 188 62 0 chr9 30424405 30424533 -93651639 + (TA)n Simple_repeat Simple_repeat 2 137 0 6 817 267 31 0 0 chr9 30424533 30424565 -93651607 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 817 370 297 135 4 chr9 30426355 30426585 -93649587 + L1ME2z LINE L1 6023 6282 -162 6 817 422 209 0 23 chr9 30427441 30427529 -93648643 - Lx7 LINE L1 -959 6737 6652 6 817 319 298 8 82 chr9 30427535 30427678 -93648494 + Lx8 LINE L1 7124 7245 -451 6 817 722 227 124 32 chr9 30428323 30428573 -93647599 - RMER1C Other Other -3 1339 1067 6 817 284 282 99 89 chr9 30428938 30429129 -93647043 - MLT1C LTR MaLR -274 193 1 6 817 286 273 43 57 chr9 30429926 30430066 -93646106 - MER5A DNA MER1_type -5 184 47 6 817 266 208 100 38 chr9 30430759 30430839 -93645333 - MLT1A LTR MaLR -2 406 322 6 817 334 309 11 0 chr9 30430950 30431044 -93645128 - MLT1A LTR MaLR -215 159 65 6 817 520 232 0 18 chr9 30431428 30431542 -93644630 + PB1D10 SINE Alu 1 112 -5 6 817 223 283 8 46 chr9 30431569 30431664 -93644508 + ID4_ SINE ID 5 96 -56 6 817 24 32 0 0 chr9 30431877 30431908 -93644264 + AT_rich Low_complexity Low_complexity 1 31 0 6 817 242 214 0 18 chr9 30431909 30431966 -93644206 + MARNA DNA Mariner 387 442 -144 6 817 233 294 14 14 chr9 30431918 30431987 -93644185 - MARNA DNA Mariner -396 190 122 6 817 270 301 188 0 chr9 30432244 30432420 -93643752 + MIRb SINE MIR 7 216 -52 6 817 462 288 45 15 chr9 30433500 30433701 -93642471 - LTR37B LTR ERV1 -61 407 201 6 817 938 76 0 8 chr9 30434721 30434854 -93641318 + (TTC)n Simple_repeat Simple_repeat 3 134 0 6 817 192 40 0 0 chr9 30434863 30434888 -93641284 + (TCTCTG)n Simple_repeat Simple_repeat 6 30 0 6 817 330 26 0 0 chr9 30434980 30435019 -93641153 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 817 309 26 0 0 chr9 30435021 30435059 -93641113 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 6 817 1117 226 79 15 chr9 30435961 30436226 -93639946 + Lx6 LINE L1 7174 7455 -5 6 817 600 111 0 0 chr9 30437529 30437619 -93638553 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 6 817 302 297 14 0 chr9 30439286 30439360 -93636812 + MER5A1 DNA MER1_type 7 81 -85 6 817 570 298 101 9 chr9 30439379 30439606 -93636566 + B4A SINE B4 25 272 -20 6 817 180 216 0 0 chr9 30440343 30440394 -93635778 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 817 197 327 117 7 chr9 30441909 30442063 -93634109 + MIRb SINE MIR 64 234 -34 6 817 302 335 86 40 chr9 30443255 30443429 -93632743 - MIRb SINE MIR -51 217 36 6 817 271 339 9 35 chr9 30443597 30443713 -93632459 + MLT1J LTR MaLR 162 274 -238 6 817 195 42 0 0 chr9 30443715 30443739 -93632433 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 817 219 146 0 0 chr9 30444586 30444627 -93631545 + (A)n Simple_repeat Simple_repeat 1 41 0 6 817 274 233 13 76 chr9 30445352 30445431 -93630741 + PB1D10 SINE Alu 42 115 -2 6 817 249 263 0 17 chr9 30445438 30445496 -93630676 + G-rich Low_complexity Low_complexity 3 59 0 6 817 432 299 69 44 chr9 30446033 30446236 -93629936 + MTEa LTR MaLR 172 379 0 6 817 1908 5 0 0 chr9 30446340 30446550 -93629622 - L1Md_A LINE L1 -434 6148 5939 6 817 4237 9 0 0 chr9 30446551 30446996 -93629176 + L1Md_A LINE L1 6138 6582 0 6 817 1283 151 87 0 chr9 30447022 30447228 -93628944 - URR1B DNA MER1_type 0 225 2 6 817 292 268 12 0 chr9 30447232 30447314 -93628858 + L1MB1 LINE L1 6083 6165 -3 6 817 21 36 0 0 chr9 30447439 30447467 -93628705 + AT_rich Low_complexity Low_complexity 1 28 0 6 817 450 0 0 0 chr9 30447599 30447649 -93628523 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 817 426 53 0 0 chr9 30447649 30447706 -93628466 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 817 324 0 0 0 chr9 30447773 30447809 -93628363 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 817 1509 66 16 11 chr9 30447825 30448010 -93628162 + B2_Mm2 SINE B2 1 186 -9 6 817 1820 192 95 11 chr9 30448021 30448389 -93627783 - MTD LTR MaLR -8 411 13 6 817 3450 16 0 0 chr9 30449407 30449774 -93626398 + IAPLTR1_Mm LTR ERVK 1 367 0 6 817 56639 22 15 3 chr9 30449774 30456168 -93620004 + IAPEz-int LTR ERVK 8 6481 0 6 817 3450 16 0 0 chr9 30456168 30456535 -93619637 + IAPLTR1_Mm LTR ERVK 1 367 0 6 817 713 222 27 14 chr9 30458236 30458382 -93617790 + B1F SINE Alu 1 148 -1 6 817 1081 282 70 15 chr9 30458752 30459223 -93616949 - L1M4 LINE L1 -1086 5060 4564 6 817 261 294 111 56 chr9 30459383 30459581 -93616591 - ORR1E LTR MaLR -95 264 56 6 817 1002 174 0 7 chr9 30460266 30460416 -93615756 - B1_Mur1 SINE Alu 0 149 1 6 817 576 0 0 0 chr9 30461282 30461346 -93614826 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 817 1281 264 37 86 chr9 30462075 30462561 -93613611 + MLT1C LTR MaLR 1 462 -5 6 817 1964 125 9 59 chr9 30462873 30463212 -93612960 + RLTRETN_Mm LTR ERVK 1 322 0 6 817 1782 100 0 0 chr9 30464226 30464467 -93611705 + L1_Mus2 LINE L1 6007 6247 -319 6 817 19142 165 37 1 chr9 30464465 30467858 -93608314 + L1_Mur2 LINE L1 2065 5580 -297 6 817 7734 91 11 5 chr9 30467858 30468847 -93607325 + L1Md_F2 LINE L1 5587 6581 -1 6 817 774 75 0 0 chr9 30468884 30468990 -93607182 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 6 817 973 150 0 11 chr9 30468990 30469172 -93607000 + GA-rich Low_complexity Low_complexity 1 180 0 6 817 926 83 8 0 chr9 30469175 30469308 -93606864 + (GAGAA)n Simple_repeat Simple_repeat 2 135 0 6 817 2657 84 84 0 chr9 30470407 30470786 -93605386 - IAPLTR2a LTR ERVK 0 411 1 6 817 6291 35 5 12 chr9 30470786 30471537 -93604635 - IAPEz-int LTR ERVK 0 6481 5736 6 817 2222 75 0 0 chr9 30471536 30471814 -93604358 - IAPEz-int LTR ERVK -4845 1636 1359 6 817 3404 74 20 31 chr9 30471814 30472553 -93603619 - IAPEz-int LTR ERVK -5819 662 9 6 817 2662 80 85 0 chr9 30472554 30472929 -93603243 - IAPLTR2a LTR ERVK 0 411 5 6 817 6502 86 34 46 chr9 30473207 30474120 -93602052 - RLTR13D6 LTR ERVK 0 902 1 6 817 202 333 0 0 chr9 30474196 30474253 -93601919 + MIR SINE MIR 6 62 -200 6 817 24 0 0 0 chr9 30474400 30474424 -93601748 + AT_rich Low_complexity Low_complexity 1 24 0 6 817 291 322 88 14 chr9 30474549 30474697 -93601475 + Helitron3Na_Mam RC Helitron 284 442 -44 6 817 261 82 52 52 chr9 30474771 30474848 -93601324 + (TATAA)n Simple_repeat Simple_repeat 4 80 0 6 817 4614 172 44 87 chr9 30474942 30475363 -93600809 + Lx7 LINE L1 4841 5271 -609 6 817 1143 58 7 48 chr9 30475363 30475509 -93600663 + B1_Mus1 SINE Alu 2 141 -7 6 817 8055 192 63 58 chr9 30475509 30477797 -93598375 + Lx7 LINE L1 5272 7538 -158 6 817 321 256 49 16 chr9 30477799 30477922 -93598250 - MER57A-int LTR ERV1 -775 5412 5286 6 817 1072 296 105 122 chr9 30478022 30478968 -93597204 - MER57A-int LTR ERV1 -1338 4849 3920 6 817 255 219 36 127 chr9 30479272 30479295 -93596877 + MT2B2 LTR ERVL 152 251 -333 6 817 468 230 11 0 chr9 30479295 30479382 -93596790 + PB1D10 SINE Alu 8 95 -22 6 817 305 254 87 55 chr9 30479532 30479715 -93596457 - MER57A-int LTR ERV1 -3772 2415 2227 6 817 669 13 0 0 chr9 30480126 30480204 -93595968 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 817 217 306 24 40 chr9 30481649 30481775 -93594397 + MIRb SINE MIR 118 241 -27 6 817 396 0 0 0 chr9 30483509 30483553 -93592619 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 817 245 195 0 0 chr9 30483556 30483597 -93592575 + PB1D10 SINE Alu 36 76 -41 6 817 342 0 0 0 chr9 30484031 30484069 -93592103 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 817 261 267 19 65 chr9 30484775 30484883 -93591289 + L1ME4a LINE L1 5949 6051 -73 6 817 297 188 0 158 chr9 30484929 30484966 -93591206 - L1M2 LINE L1 -2376 3767 3734 6 817 195 69 0 0 chr9 30484966 30484995 -93591177 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 6 817 873 175 44 0 chr9 30484998 30485135 -93591037 - B1_Mur4 SINE Alu -7 143 1 6 817 297 188 0 158 chr9 30485135 30485188 -93590984 - L1M2 LINE L1 -2410 3733 3688 6 817 1052 303 24 54 chr9 30485187 30485683 -93590489 + L1M2 LINE L1 4798 5278 -865 6 817 3595 269 91 31 chr9 30485697 30486747 -93589425 + Lx8 LINE L1 6225 7338 -135 6 817 798 19 28 0 chr9 30486747 30486855 -93589317 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 6 817 3595 269 91 31 chr9 30486855 30486978 -93589194 + Lx8 LINE L1 7339 7468 -5 6 817 254 222 18 116 chr9 30486892 30487004 -93589168 + RMER1C Other Other 1241 1341 -1 6 817 646 227 58 17 chr9 30487014 30487253 -93588919 + L1M2 LINE L1 5249 5509 -791 6 817 300 296 0 17 chr9 30487269 30487386 -93588786 + L1M2 LINE L1 5590 5704 -587 6 817 238 294 65 56 chr9 30487386 30487494 -93588678 + B4A SINE B4 70 178 -114 6 817 382 201 13 65 chr9 30487419 30487533 -93588639 + B1F SINE Alu 19 128 -22 6 817 187 348 132 24 chr9 30487874 30488086 -93588086 - L2 LINE L2 -532 2887 2653 6 817 1406 25 0 0 chr9 30490207 30490366 -93585806 + L1Md_T LINE L1 5428 5586 -297 6 817 9019 35 0 0 chr9 30490366 30491362 -93584810 + L1Md_T LINE L1 5587 6582 0 6 817 697 324 10 81 chr9 30491785 30492094 -93584078 + B4A SINE B4 2 288 -4 6 817 272 272 108 39 chr9 30492466 30492596 -93583576 - L3 LINE CR1 -748 3741 3603 6 817 241 287 59 78 chr9 30492549 30492651 -93583521 + L3 LINE CR1 3531 3630 -859 6 817 2343 154 15 51 chr9 30493569 30493959 -93582213 - ORR1C1 LTR MaLR 0 378 3 6 817 258 206 40 27 chr9 30494239 30494314 -93581858 - L1_Mur3 LINE L1 -750 5430 5355 6 817 541 266 201 48 chr9 30494355 30494747 -93581425 - L1_Mur3 LINE L1 -865 5275 4824 6 817 4456 229 82 26 chr9 30494743 30496310 -93579862 - L1_Mur3 LINE L1 -1685 4461 2691 6 817 487 291 37 0 chr9 30496482 30496616 -93579556 - LTR79 LTR ERVL -92 435 297 6 817 334 303 18 27 chr9 30497160 30497272 -93578900 + MIR SINE MIR 102 212 -50 6 817 3953 16 123 0 chr9 30497992 30498431 -93577741 + MT2_Mm LTR ERVL 1 493 0 6 817 7761 12 21 0 chr9 30498431 30500000 -93576172 + MERVL-int LTR ERVL 1 1602 -3883 6 817 33649 16 11 0 chr9 30500000 30503718 -93572454 + MERVL-int LTR ERVL 1603 5360 -125 1 817 362 167 46 35 chr9 30503718 30503805 -93572367 + ORR1A3-int LTR MaLR 553 640 -1323 2 817 321 0 0 0 chr9 30503805 30503843 -93572329 + MERVL-int LTR ERVL 5448 5485 0 1 817 3783 14 123 0 chr9 30503843 30504282 -93571890 + MT2_Mm LTR ERVL 1 493 0 1 817 319 329 51 33 chr9 30505981 30506195 -93569977 + L1MD LINE L1 5023 5240 -906 3 817 556 184 8 0 chr9 30508708 30508821 -93567351 + PB1D10 SINE Alu 1 118 -2 4 817 433 287 58 52 chr9 30509060 30509251 -93566921 + MER20 DNA MER1_type 1 192 -27 5 817 346 295 8 43 chr9 30509383 30509500 -93566672 + B1F SINE Alu 32 144 -5 6 817 1118 286 21 16 chr9 30509764 30510140 -93566032 + Tigger13a DNA MER2_type 348 725 -46 7 817 1016 205 48 5 chr9 30511287 30511493 -93564679 + B3 SINE B2 2 216 0 8 817 1898 262 68 30 chr9 30511503 30512494 -93563678 + L1_Mur3 LINE L1 2558 3585 -2295 9 817 1638 171 241 83 chr9 30512647 30512685 -93563487 - MT2A LTR ERVL 0 533 496 1 817 399 83 0 0 chr9 30512685 30512745 -93563427 + (TGAA)n Simple_repeat Simple_repeat 2 61 0 1 817 1638 171 241 83 chr9 30512745 30513166 -93563006 - MT2A LTR ERVL -38 495 2 1 817 396 59 0 0 chr9 30513236 30513287 -93562885 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 817 1771 227 41 29 chr9 30513290 30513790 -93562382 - RLTR11A2 LTR ERVK -6 521 13 1 817 279 0 0 0 chr9 30513790 30513821 -93562351 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 817 1771 227 41 29 chr9 30513821 30513833 -93562339 - RLTR11A2 LTR ERVK -515 12 3 1 817 208 325 0 86 chr9 30513992 30514120 -93562052 + L4 LINE RTE 1913 2029 0 1 817 913 179 186 70 chr9 30515049 30515219 -93560953 - ORR1D1 LTR MaLR -4 370 182 1 817 198 0 0 0 chr9 30515219 30515241 -93560931 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 817 913 179 186 70 chr9 30515241 30515371 -93560801 - ORR1D1 LTR MaLR -193 181 35 1 817 7205 76 2 8 chr9 30515504 30516666 -93559506 - L1_Mus1 LINE L1 -506 6061 4903 1 817 3889 54 0 12 chr9 30516668 30517158 -93559014 + L1_Mus1 LINE L1 6084 6567 0 1 817 649 173 70 28 chr9 30518416 30518559 -93557613 + B1_Mur1 SINE Alu 1 149 0 1 817 2382 258 42 34 chr9 30518813 30519644 -93556528 + RCHARR1 DNA MER1_type 70 907 -67 2 817 390 159 0 0 chr9 30519645 30519714 -93556458 + (TATATG)n Simple_repeat Simple_repeat 1 69 0 2 817 370 227 9 26 chr9 30519720 30519833 -93556339 + RCHARR1 DNA MER1_type 863 973 -1 2 817 955 209 83 29 chr9 30519983 30520261 -93555911 + L1MD2 LINE L1 5429 5724 -455 2 817 898 319 67 9 chr9 30520263 30520608 -93555564 + MLT1A0 LTR MaLR 1 365 0 2 817 1019 286 133 12 chr9 30520617 30521113 -93555059 + L1MD2 LINE L1 5731 6286 -73 2 817 310 364 67 21 chr9 30521319 30521692 -93554480 - L1MEc LINE L1 -5940 460 71 2 817 21 0 0 0 chr9 30521804 30521825 -93554347 + AT_rich Low_complexity Low_complexity 1 21 0 2 817 858 189 165 45 chr9 30522937 30523137 -93553035 + URR1B DNA MER1_type 1 224 -1 2 817 465 318 80 5 chr9 30525574 30525773 -93550399 + MER58A DNA MER1_type 1 214 -10 2 817 663 237 124 0 chr9 30526072 30526258 -93549914 - B3 SINE B2 0 216 8 2 817 295 290 14 0 chr9 30528934 30529003 -93547169 + MER81 DNA AcHobo 35 104 -10 2 817 192 213 21 0 chr9 30529566 30529613 -93546559 - L3b LINE CR1 -4 478 431 3 817 346 308 103 74 chr9 30531332 30531574 -93544598 + ORR1D2 LTR MaLR 18 266 -104 3 817 339 78 0 0 chr9 30533205 30533256 -93542916 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 817 251 348 28 43 chr9 30533642 30533783 -93542389 - L1MC LINE L1 -2224 5658 5520 3 817 662 275 65 24 chr9 30534313 30534689 -93541483 - MLT2B4 LTR ERVL -62 494 1 3 817 588 53 0 0 chr9 30534708 30534784 -93541388 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 817 1314 170 265 6 chr9 30534793 30535106 -93541066 + ORR1B1 LTR MaLR 1 394 0 3 817 488 321 78 32 chr9 30535110 30535455 -93540717 + L1MC4 LINE L1 6682 7074 -968 3 817 767 221 121 0 chr9 30535524 30535714 -93540458 + B3 SINE B2 3 215 -1 3 817 308 346 19 0 chr9 30535761 30535865 -93540307 + PB1D10 SINE Alu 6 111 -6 3 817 260 289 87 9 chr9 30536064 30536179 -93539993 + L1MC4 LINE L1 7779 7902 -140 3 817 1484 198 103 3 chr9 30536307 30536647 -93539525 - ORR1C1 LTR MaLR -2 376 3 4 817 5238 231 43 11 chr9 30537124 30538342 -93537830 - Lx9 LINE L1 -7 7637 6380 4 818 354 240 0 10 chr9 30540216 30540317 -93535855 - L1MB2 LINE L1 -1 6170 6071 4 818 2347 161 34 19 chr9 30541783 30542195 -93533977 - MTC LTR MaLR -3 418 1 4 818 316 298 67 61 chr9 30543393 30543553 -93532619 + MIR SINE MIR 4 169 -99 4 818 610 264 0 0 chr9 30543892 30544017 -93532155 + B1F SINE Alu 15 139 -10 4 818 758 302 81 17 chr9 30544599 30544895 -93531277 - Lx8 LINE L1 -356 7117 6803 4 818 537 303 47 16 chr9 30544907 30545098 -93531074 + Lx7 LINE L1 7118 7314 -382 4 818 251 28 0 27 chr9 30545109 30545146 -93531026 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 818 216 0 0 0 chr9 30545271 30545295 -93530877 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 818 206 216 0 0 chr9 30545299 30545336 -93530836 + polypurine Low_complexity Low_complexity 4 40 0 5 818 605 271 84 81 chr9 30545431 30545704 -93530468 - Lx8 LINE L1 -666 6807 6534 4 818 210 226 19 19 chr9 30545876 30545930 -93530242 - RSINE1 SINE B4 -109 56 3 5 818 282 294 147 0 chr9 30545994 30546096 -93530076 + L2a LINE L2 3305 3421 -5 5 818 320 315 23 0 chr9 30547216 30547355 -93528817 + MIRc SINE MIR 7 154 -114 5 818 192 262 33 0 chr9 30547476 30547537 -93528635 + MIRc SINE MIR 92 154 -114 5 818 264 226 0 0 chr9 30547539 30547592 -93528580 + (ATG)n Simple_repeat Simple_repeat 1 53 0 5 818 467 56 0 14 chr9 30548241 30548313 -93527859 + (CAAAA)n Simple_repeat Simple_repeat 5 75 0 5 818 237 293 42 41 chr9 30549521 30549717 -93526455 + L2c LINE L2 3014 3206 -169 5 818 231 296 65 0 chr9 30549902 30550010 -93526162 + MIR3 SINE MIR 91 205 -3 5 818 207 0 0 0 chr9 30551469 30551492 -93524680 + (A)n Simple_repeat Simple_repeat 1 23 0 5 818 273 381 6 23 chr9 30552179 30552351 -93523821 + (TGGA)n Simple_repeat Simple_repeat 1 169 0 6 818 1265 226 23 13 chr9 30552389 30552694 -93523478 - RMER1C Other Other 0 1342 1035 6 818 3126 198 58 67 chr9 30552703 30552802 -93523370 - RMER1B Other Other -11 1055 945 6 818 465 19 0 0 chr9 30552802 30552856 -93523316 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 6 818 3126 198 58 67 chr9 30552856 30553093 -93523079 - RMER1B Other Other -122 944 701 6 818 2439 188 30 28 chr9 30553093 30553597 -93522575 + RLTR16 LTR ERVK 1 505 0 6 818 3126 198 58 67 chr9 30553597 30554030 -93522142 - RMER1B Other Other -366 700 294 6 818 2123 250 29 91 chr9 30554063 30554783 -93521389 - RMER1C Other Other -290 1052 276 6 818 1220 55 0 7 chr9 30554866 30555014 -93521158 + B1_Mus2 SINE Alu 1 147 0 6 818 192 158 0 0 chr9 30555024 30555062 -93521110 + A-rich Low_complexity Low_complexity 1 38 0 6 818 25 65 0 0 chr9 30555566 30555612 -93520560 + AT_rich Low_complexity Low_complexity 1 46 0 6 818 207 213 0 21 chr9 30555746 30555794 -93520378 + CT-rich Low_complexity Low_complexity 3 49 0 6 818 678 305 97 66 chr9 30555912 30556454 -93519718 - MLT1F2 LTR MaLR -2 558 3 6 818 5466 152 43 3 chr9 30557207 30558128 -93518044 - Lx2 LINE L1 0 6997 6040 7 818 2599 98 14 0 chr9 30558128 30558495 -93517677 + Lx2 LINE L1 5635 6006 -991 7 818 858 239 39 137 chr9 30558666 30559082 -93517090 - MTE2a LTR MaLR -3 376 2 7 818 1174 238 71 97 chr9 30559159 30559541 -93516631 + ORR1D1 LTR MaLR 1 372 -2 7 818 541 231 88 0 chr9 30559550 30559697 -93516475 - MER2 DNA MER2_type -22 323 164 7 818 420 308 9 0 chr9 30559817 30559924 -93516248 - PB1D10 SINE Alu -1 116 9 7 818 983 39 0 16 chr9 30560438 30560567 -93515605 + (TTCTCC)n Simple_repeat Simple_repeat 6 132 0 7 818 1281 60 0 0 chr9 30560809 30560976 -93515196 + (CA)n Simple_repeat Simple_repeat 2 168 0 7 818 1935 171 148 2 chr9 30561289 30561723 -93514449 + Lx9 LINE L1 7143 7639 -5 7 818 884 302 103 36 chr9 30562351 30562770 -93513402 - MT2A LTR ERVL 0 533 87 7 818 245 228 0 66 chr9 30563134 30563195 -93512977 + ID4 SINE ID 3 59 -24 7 818 477 0 0 0 chr9 30564191 30564244 -93511928 + (ATAGG)n Simple_repeat Simple_repeat 2 54 0 8 818 282 29 0 0 chr9 30564885 30564920 -93511252 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 8 818 8833 202 34 40 chr9 30566839 30567961 -93508211 + Lx7 LINE L1 5604 6742 -954 8 818 438 75 0 0 chr9 30567961 30568028 -93508144 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 8 818 8833 202 34 40 chr9 30568028 30568856 -93507316 + Lx7 LINE L1 6743 7544 -152 8 818 1016 244 57 49 chr9 30571262 30571630 -93504542 - MTD LTR MaLR -11 408 1 8 818 180 0 0 0 chr9 30572138 30572158 -93504014 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 818 304 311 73 20 chr9 30572658 30572809 -93503363 - MIR3 SINE MIR -11 197 39 8 818 211 72 0 45 chr9 30574193 30574237 -93501935 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 8 818 1568 206 22 33 chr9 30574258 30574625 -93501547 - ORR1B2 LTR MaLR -2 365 3 8 818 263 244 13 13 chr9 30574714 30574793 -93501379 - MIRb SINE MIR -68 200 122 8 818 1802 136 8 238 chr9 30575238 30575562 -93500610 + ORR1B1 LTR MaLR 1 231 -163 9 818 1236 47 0 0 chr9 30575562 30575710 -93500462 + B1_Mus1 SINE Alu 1 148 0 9 818 1802 136 8 238 chr9 30575710 30575897 -93500275 + ORR1B1 LTR MaLR 232 394 0 9 818 234 274 67 75 chr9 30577732 30577866 -93498306 + MIRc SINE MIR 17 149 -119 9 818 239 266 24 48 chr9 30578423 30578506 -93497666 + L1ME3B LINE L1 6150 6230 -10 9 818 368 282 24 8 chr9 30578740 30578865 -93497307 - B1F SINE Alu -5 144 18 9 818 510 191 25 50 chr9 30578900 30579021 -93497151 - B4 SINE B4 -43 249 132 9 818 1216 238 63 15 chr9 30580741 30581046 -93495126 + ORR1D2 LTR MaLR 2 322 -48 9 818 2040 155 8 17 chr9 30581046 30581406 -93494766 - MTC LTR MaLR 0 421 65 9 818 1934 156 14 14 chr9 30581402 30581760 -93494412 - ORR1B2 LTR MaLR -8 359 2 9 818 512 134 0 0 chr9 30581760 30581840 -93494332 - MTC LTR MaLR -341 80 1 9 818 314 137 0 0 chr9 30581840 30581890 -93494282 + ORR1D2 LTR MaLR 324 373 -1 9 818 305 338 109 36 chr9 30581891 30582220 -93493952 - MT2A LTR ERVL -87 446 94 9 818 521 248 117 0 chr9 30582334 30582471 -93493701 + ID_B1 SINE B4 1 153 -71 1 818 313 238 37 50 chr9 30582415 30582512 -93493660 + B1F2 SINE Alu 14 109 -40 1 818 189 369 45 0 chr9 30583390 30583501 -93492671 + MIRb SINE MIR 148 263 -5 1 818 396 214 153 0 chr9 30583701 30583799 -93492373 + PB1D10 SINE Alu 4 116 -1 1 818 23 0 0 0 chr9 30583807 30583830 -93492342 + AT_rich Low_complexity Low_complexity 1 23 0 1 818 301 169 0 38 chr9 30584292 30584372 -93491800 + GA-rich Low_complexity Low_complexity 3 79 0 1 818 578 298 30 6 chr9 30584500 30584669 -93491503 + B4A SINE B4 118 290 -2 1 818 334 345 117 46 chr9 30584780 30585105 -93491067 + MLT1H-int LTR MaLR 19 366 -1043 1 818 23 0 0 0 chr9 30585861 30585884 -93490288 + AT_rich Low_complexity Low_complexity 1 23 0 1 818 225 154 0 0 chr9 30585907 30585946 -93490226 + MLT1D LTR MaLR 454 492 -13 1 818 737 142 7 0 chr9 30586452 30586593 -93489579 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 1 818 1091 311 5 46 chr9 30586638 30587049 -93489123 - Lx9 LINE L1 -223 7421 7028 1 818 507 288 0 9 chr9 30587069 30587212 -93488960 - Lx9 LINE L1 -1075 6569 6290 1 818 202 146 0 24 chr9 30587339 30587381 -93488791 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 818 412 314 96 84 chr9 30587913 30588247 -93487925 - ORR1E LTR MaLR -21 338 1 1 818 206 270 75 24 chr9 30589490 30589590 -93486582 - MIRc SINE MIR -125 143 38 1 818 490 268 98 0 chr9 30589751 30589915 -93486257 + MER2 DNA MER2_type 2 181 -164 1 818 454 181 85 0 chr9 30590611 30590705 -93485467 - B3 SINE B2 -114 102 1 1 818 198 176 0 0 chr9 30591080 30591131 -93485041 + A-rich Low_complexity Low_complexity 1 51 0 1 818 360 0 0 0 chr9 30593134 30593174 -93482998 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 818 579 233 8 0 chr9 30597067 30597187 -93478985 - B3 SINE B2 0 216 96 1 818 375 215 0 12 chr9 30597340 30597420 -93478752 + MLT1A1 LTR MaLR 9 87 -321 1 818 996 106 0 0 chr9 30597603 30597745 -93478427 + B1_Mus1 SINE Alu 2 143 -5 1 818 183 222 0 0 chr9 30598864 30598900 -93477272 + MIRm SINE MIR 61 96 -180 1 818 252 272 42 32 chr9 30598898 30598993 -93477179 + MIRb SINE MIR 124 219 -49 1 818 4101 235 87 8 chr9 30600293 30601526 -93474646 + RMER1A Other Other 2 1021 -9 1 818 1485 169 50 7 chr9 30601652 30601950 -93474222 + Lx3C LINE L1 6663 6973 -3 1 818 1238 128 1 27 chr9 30603364 30603626 -93472546 - RMER19B LTR ERVK 0 902 711 1 818 562 161 8 33 chr9 30603623 30603745 -93472427 - RMER19B LTR ERVK -618 119 1 1 818 1786 191 19 0 chr9 30603871 30604196 -93471976 + Lx6 LINE L1 7120 7450 -10 1 818 321 168 10 40 chr9 30604751 30604850 -93471322 + (CATATA)n Simple_repeat Simple_repeat 1 96 0 1 818 453 270 96 32 chr9 30605070 30605288 -93470884 + Tigger5 DNA MER2_type 2150 2381 -25 1 818 1119 292 67 12 chr9 30605295 30605700 -93470472 + MER63D DNA AcHobo 134 560 -501 1 818 247 291 54 90 chr9 30605830 30605996 -93470176 + Lx8 LINE L1 7198 7357 -116 1 818 2842 117 27 10 chr9 30606054 30606468 -93469704 - MTC LTR MaLR 0 421 1 1 818 4915 165 164 11 chr9 30606468 30607558 -93468614 - MTC-int LTR MaLR 0 1258 2 1 818 558 198 19 0 chr9 30607566 30607672 -93468500 - MTC LTR MaLR -313 108 1 1 818 1239 269 68 6 chr9 30607698 30608049 -93468123 + MTE2b LTR MaLR 1 373 -6 1 818 483 257 0 0 chr9 30608364 30608465 -93467707 + PB1D10 SINE Alu 8 108 -9 1 818 510 17 0 0 chr9 30608609 30608668 -93467504 + (TTA)n Simple_repeat Simple_repeat 1 59 0 1 818 1932 119 20 10 chr9 30608674 30608970 -93467202 - Lx3B LINE L1 -27 6946 6648 1 818 362 222 11 32 chr9 30608969 30609062 -93467110 + Lx8 LINE L1 6901 6991 -482 1 818 649 297 72 4 chr9 30609092 30609344 -93466828 + L1MB1 LINE L1 5846 6113 -55 1 818 282 213 144 31 chr9 30609380 30609477 -93466695 + L1MA10 LINE L1 6213 6320 -14 1 818 542 258 37 6 chr9 30609637 30609801 -93466371 - L1MA6 LINE L1 -69 6231 6063 1 818 274 274 24 0 chr9 30609837 30609921 -93466251 + MER5A DNA MER1_type 64 149 -40 1 818 253 357 40 0 chr9 30611103 30611229 -93464943 + MER58A DNA MER1_type 9 139 -85 1 818 184 54 0 75 chr9 30611269 30611309 -93464863 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 1 818 487 325 62 0 chr9 30611758 30611967 -93464205 + MLT1A0 LTR MaLR 144 365 0 1 818 230 220 20 0 chr9 30612457 30612507 -93463665 + MTD LTR MaLR 366 416 -3 1 818 337 236 0 77 chr9 30612902 30612980 -93463192 + PB1D10 SINE Alu 24 95 -22 1 818 757 296 5 14 chr9 30612982 30613191 -93462981 + MTD LTR MaLR 3 209 -210 1 818 1787 15 0 0 chr9 30613191 30613388 -93462784 - L1Md_F3 LINE L1 -405 6179 5983 1 818 2958 25 42 3 chr9 30613388 30613748 -93462424 + L1Md_F3 LINE L1 6210 6583 -1 1 818 200 148 48 16 chr9 30613762 30613824 -93462348 + (TTATA)n Simple_repeat Simple_repeat 2 65 0 1 818 1044 212 20 0 chr9 30613834 30614037 -93462135 + MTD LTR MaLR 213 419 0 1 818 259 266 78 0 chr9 30614037 30614085 -93462087 + B1F SINE Alu 89 141 -8 1 818 229 302 0 16 chr9 30614088 30614152 -93462020 + G-rich Low_complexity Low_complexity 1 63 0 1 818 783 342 22 19 chr9 30614155 30614426 -93461746 - Tigger5 DNA MER2_type -2133 273 2 1 818 342 262 31 69 chr9 30614637 30614797 -93461375 - L1ME4a LINE L1 -11 6113 5960 1 818 417 70 0 0 chr9 30615005 30615062 -93461110 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 818 380 228 0 25 chr9 30615109 30615190 -93460982 - ID4 SINE ID -3 80 2 1 818 427 291 0 9 chr9 30615190 30615301 -93460871 - PB1D10 SINE Alu -2 115 6 1 818 1061 275 62 31 chr9 30615362 30615718 -93460454 - ORR1D2 LTR MaLR 0 370 4 1 818 1597 148 288 12 chr9 30615718 30616048 -93460124 + MTC LTR MaLR 1 421 0 1 818 516 309 7 21 chr9 30617542 30617684 -93458488 + RSINE1 SINE B4 4 143 -22 1 818 414 0 0 0 chr9 30617688 30617734 -93458438 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 818 522 269 229 6 chr9 30617755 30617938 -93458234 + ID_B1 SINE B4 1 224 0 1 818 237 302 137 33 chr9 30618016 30618172 -93458000 - L2a LINE L2 -5 3421 3235 1 818 282 272 139 9 chr9 30618855 30618970 -93457202 + LTR16E2 LTR ERVL 439 568 0 1 818 1083 196 5 24 chr9 30619832 30620065 -93456107 - MTB_Mm LTR MaLR 0 421 200 1 818 764 281 72 5 chr9 30620396 30620618 -93455554 + MER2 DNA MER2_type 95 331 -14 1 818 309 316 0 58 chr9 30621145 30621249 -93454923 - MIRc SINE MIR -117 159 62 1 818 306 67 0 0 chr9 30621453 30621498 -93454674 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 1 818 208 188 15 15 chr9 30621517 30621582 -93454590 + CT-rich Low_complexity Low_complexity 5 69 0 1 818 479 209 38 9 chr9 30621613 30621719 -93454453 + MLT1A1 LTR MaLR 300 408 0 1 818 277 227 196 0 chr9 30621926 30622023 -93454149 + L1MEf LINE L1 1457 1572 -4628 1 818 775 252 59 5 chr9 30622072 30622275 -93453897 - B4A SINE B4 -73 219 6 1 818 245 327 35 26 chr9 30623377 30623490 -93452682 + MIR SINE MIR 116 229 -33 1 818 222 322 45 31 chr9 30624572 30624725 -93451447 + MIR SINE MIR 63 219 -49 1 818 296 362 59 7 chr9 30624999 30625152 -93451020 + MLT1A0 LTR MaLR 40 200 -165 1 818 1492 24 0 0 chr9 30625152 30625319 -93450853 + L1_Mm LINE L1 5397 5563 -320 1 818 275 335 70 49 chr9 30625319 30625342 -93450830 + MLT1A0 LTR MaLR 170 194 -196 1 818 7896 63 5 4 chr9 30625342 30626337 -93449835 + L1Md_F2 LINE L1 5587 6582 0 1 818 539 319 12 10 chr9 30626337 30626499 -93449673 + MLT1A0 LTR MaLR 186 358 -32 1 818 189 0 0 0 chr9 30627935 30627956 -93448216 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 818 1338 244 40 44 chr9 30628792 30629113 -93447059 - ORR1D2 LTR MaLR 0 370 51 1 818 203 32 0 61 chr9 30629122 30629155 -93447017 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 818 4591 125 16 14 chr9 30629155 30629844 -93446328 - Lx4A LINE L1 -9 7049 6359 1 818 3697 107 24 0 chr9 30629846 30630378 -93445794 + Lx4A LINE L1 5831 6375 -683 1 818 2445 80 12 3 chr9 30631107 30631431 -93444741 - ORR1A2 LTR MaLR 0 327 1 1 818 265 47 47 0 chr9 30631437 30631480 -93444692 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 1 818 886 151 0 28 chr9 30631481 30631624 -93444548 - B1_Mus1 SINE Alu 0 148 10 1 818 466 271 0 67 chr9 30631492 30631642 -93444530 - ID_B1 SINE B4 -7 217 78 1 818 226 387 13 0 chr9 30632057 30632132 -93444040 + MIR SINE MIR 69 144 -64 1 818 282 29 0 0 chr9 30632366 30632401 -93443771 + (TGG)n Simple_repeat Simple_repeat 3 37 0 1 818 992 57 11 62 chr9 30632690 30633045 -93443127 + (TCTCCC)n Simple_repeat Simple_repeat 1 336 0 1 818 1672 218 80 13 chr9 30633709 30634085 -93442087 + MTD LTR MaLR 18 418 -1 1 818 409 257 55 129 chr9 30634132 30634273 -93441899 + B2_Mm2 SINE B2 1 135 -60 1 818 594 68 0 0 chr9 30634273 30634361 -93441811 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 818 409 257 55 129 chr9 30634361 30634420 -93441752 + B2_Mm2 SINE B2 136 186 -9 1 818 239 183 50 0 chr9 30634460 30634520 -93441652 + (TTATA)n Simple_repeat Simple_repeat 3 65 0 1 818 411 256 44 58 chr9 30634523 30634660 -93441512 - MER58B DNA MER1_type -205 136 2 1 818 354 185 0 0 chr9 30635058 30635139 -93441033 + GA-rich Low_complexity Low_complexity 3 83 0 1 818 1643 146 136 57 chr9 30635310 30635717 -93440455 - RMER4B LTR ERVK -3 582 1 1 818 435 272 134 64 chr9 30635887 30636234 -93439938 - MER57D LTR ERV1 0 434 12 1 818 203 171 0 0 chr9 30636253 30636288 -93439884 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1 818 439 268 166 21 chr9 30636369 30636556 -93439616 - B4A SINE B4 -78 214 1 1 818 365 250 120 0 chr9 30637491 30637583 -93438589 + PB1D10 SINE Alu 10 112 -5 1 818 3224 50 25 0 chr9 30637811 30638212 -93437960 - RLTR10A LTR ERVK 0 411 1 1 818 612 0 0 0 chr9 30638235 30638303 -93437869 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 2 818 1337 6 51 31 chr9 30638303 30638654 -93437518 + (GGGAA)n Simple_repeat Simple_repeat 1 358 0 2 818 184 95 95 0 chr9 30638654 30638696 -93437476 + GA-rich Low_complexity Low_complexity 3 48 0 2 818 820 272 180 71 chr9 30638696 30639286 -93436886 + L1MC1 LINE L1 5318 5971 -362 2 818 728 344 28 21 chr9 30639351 30639639 -93436533 + B4A SINE B4 1 290 -2 2 818 387 0 0 0 chr9 30639666 30639709 -93436463 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 818 300 27 0 0 chr9 30639709 30639745 -93436427 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 818 398 177 38 0 chr9 30639747 30639826 -93436346 + L1MC1 LINE L1 6251 6332 -1 2 818 21 0 0 0 chr9 30639889 30639910 -93436262 + AT_rich Low_complexity Low_complexity 1 21 0 2 818 1099 266 61 63 chr9 30640146 30640508 -93435664 + ORR1D2 LTR MaLR 2 362 -8 2 818 883 58 0 35 chr9 30640510 30640654 -93435518 + (GGGGA)n Simple_repeat Simple_repeat 3 141 0 2 818 187 277 35 122 chr9 30640750 30640865 -93435307 - L2c LINE L2 -42 3345 3241 2 818 216 0 0 0 chr9 30641278 30641302 -93434870 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 2 818 1339 65 0 42 chr9 30643798 30643991 -93432181 - B2_Mm2 SINE B2 -9 186 2 2 818 573 256 126 11 chr9 30644083 30644265 -93431907 - B3 SINE B2 -13 203 1 2 818 769 255 20 5 chr9 30644537 30644734 -93431438 + Lx7 LINE L1 7139 7338 -358 2 818 186 43 0 0 chr9 30644783 30644806 -93431366 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 818 226 258 9 47 chr9 30644811 30644917 -93431255 + Lx7 LINE L1 7577 7678 -18 2 818 639 203 90 8 chr9 30645245 30645379 -93430793 - B1_Mur4 SINE Alu -5 145 1 2 818 598 280 104 30 chr9 30646240 30646509 -93429663 + B4A SINE B4 4 292 0 2 818 213 121 0 0 chr9 30646529 30646562 -93429610 + (A)n Simple_repeat Simple_repeat 1 33 0 2 818 245 169 17 0 chr9 30646772 30646831 -93429341 + GA-rich Low_complexity Low_complexity 2 61 0 2 818 640 242 8 0 chr9 30648265 30648393 -93427779 + ID_B1 SINE B4 79 207 -17 2 818 620 26 13 0 chr9 30648395 30648473 -93427699 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 2 818 567 244 100 161 chr9 30648480 30648871 -93427301 + L1MB1 LINE L1 5819 6185 -4 2 818 413 344 25 112 chr9 30648902 30649089 -93427083 + B4 SINE B4 39 215 -77 2 818 306 87 0 0 chr9 30649089 30649135 -93427037 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 2 818 413 344 25 112 chr9 30649135 30649225 -93426947 + B4 SINE B4 216 292 0 2 818 529 288 7 33 chr9 30649288 30649439 -93426733 - B1F1 SINE Alu -1 148 2 2 818 1876 105 109 0 chr9 30649493 30649778 -93426394 - ORR1A4 LTR MaLR -13 316 1 2 818 734 274 56 0 chr9 30650057 30650254 -93425918 + ID_B1 SINE B4 2 209 -15 2 818 315 0 0 0 chr9 30650281 30650316 -93425856 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 818 276 335 75 25 chr9 30651014 30651173 -93424999 - MIRb SINE MIR -79 189 23 2 818 207 0 0 0 chr9 30651271 30651294 -93424878 + (A)n Simple_repeat Simple_repeat 1 23 0 2 818 189 0 0 0 chr9 30651997 30652018 -93424154 + (TCCC)n Simple_repeat Simple_repeat 1 21 0 2 818 360 0 0 0 chr9 30653123 30653163 -93423009 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 818 381 228 62 39 chr9 30654213 30654341 -93421831 + B1F1 SINE Alu 3 133 -16 2 818 614 178 6 26 chr9 30654368 30654524 -93421648 + GA-rich Low_complexity Low_complexity 1 153 0 2 818 234 301 52 96 chr9 30656424 30656490 -93419682 + LTR33C LTR ERVL 120 174 -455 2 818 2386 89 3 69 chr9 30656490 30656840 -93419332 - ORR1A2 LTR MaLR 0 327 1 2 818 234 301 52 96 chr9 30656840 30656909 -93419263 + LTR33C LTR ERVL 175 248 -381 2 818 433 268 76 38 chr9 30658615 30658747 -93417425 + MER5A DNA MER1_type 7 143 -46 2 818 233 307 78 10 chr9 30660095 30660197 -93415975 + RSINE1 SINE B4 1 109 -56 2 818 369 62 0 0 chr9 30660380 30660428 -93415744 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 818 223 208 0 20 chr9 30660428 30660477 -93415695 + (CATA)n Simple_repeat Simple_repeat 4 51 0 2 818 5508 65 18 0 chr9 30660614 30661318 -93414854 + L1_Mus2 LINE L1 5582 6266 -300 2 818 1396 52 0 0 chr9 30661318 30661490 -93414682 + L1_Mus2 LINE L1 6393 6564 -2 2 818 235 286 68 51 chr9 30662327 30662445 -93413727 + LTR78 LTR ERV1 1176 1295 -9 2 818 1367 296 59 71 chr9 30662473 30662760 -93413412 + MLT2B2 LTR ERVL 28 314 -201 2 818 381 22 0 0 chr9 30662760 30662806 -93413366 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 818 1367 296 59 71 chr9 30662806 30663012 -93413160 + MLT2B2 LTR ERVL 315 514 -1 2 818 414 295 95 34 chr9 30663024 30663203 -93412969 - MIRb SINE MIR -21 247 58 2 818 405 286 0 0 chr9 30663753 30663837 -93412335 + ID SINE ID 2 85 -139 2 818 206 279 44 144 chr9 30664274 30664454 -93411718 + MIRb SINE MIR 93 254 -14 2 818 781 297 10 0 chr9 30664481 30664690 -93411482 + B3 SINE B2 1 211 -5 2 818 26 50 0 0 chr9 30664694 30664734 -93411438 + AT_rich Low_complexity Low_complexity 1 40 0 2 818 906 305 28 21 chr9 30664812 30665097 -93411075 + B4A SINE B4 3 289 -3 2 818 696 328 103 39 chr9 30665257 30665666 -93410506 + MT2A LTR ERVL 1 435 -98 2 818 366 333 152 0 chr9 30665661 30665826 -93410346 + MT2A LTR ERVL 344 533 0 2 818 545 296 83 93 chr9 30665887 30666230 -93409942 - ORR1E LTR MaLR 0 379 3 2 818 784 247 77 39 chr9 30666380 30666666 -93409506 + L1MDa LINE L1 1398 1694 -4939 2 818 186 255 0 0 chr9 30666786 30666837 -93409335 + T-rich Low_complexity Low_complexity 1 51 0 2 818 891 158 29 0 chr9 30666841 30666980 -93409192 - B1_Mus1 SINE Alu -4 144 2 2 818 310 257 35 35 chr9 30666987 30667100 -93409072 + L1MDa LINE L1 1854 1966 -4667 2 818 1088 106 0 0 chr9 30667100 30667242 -93408930 + B1_Mus1 SINE Alu 1 142 -6 2 818 324 0 0 0 chr9 30667243 30667279 -93408893 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 2 818 1164 7 58 0 chr9 30667297 30667452 -93408720 + (GGGAA)n Simple_repeat Simple_repeat 2 165 0 2 818 1393 0 17 11 chr9 30667452 30667631 -93408541 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 2 818 309 207 111 40 chr9 30667640 30667766 -93408406 + L1MDa LINE L1 1949 2083 -4550 2 818 290 266 53 53 chr9 30667775 30667906 -93408266 + L1MDa LINE L1 2185 2315 -4318 2 818 699 291 62 0 chr9 30668073 30668283 -93407889 + Lx5 LINE L1 6827 7049 -1 2 818 1195 70 12 0 chr9 30668290 30668461 -93407711 + (TAGA)n Simple_repeat Simple_repeat 3 175 0 2 818 22 0 0 0 chr9 30668570 30668592 -93407580 + AT_rich Low_complexity Low_complexity 1 22 0 2 818 792 251 174 34 chr9 30668607 30668987 -93407185 + L1MDa LINE L1 2978 3410 -3127 2 818 232 365 12 12 chr9 30669019 30669105 -93407067 + PB1D10 SINE Alu 12 97 -20 2 818 230 81 27 0 chr9 30669105 30669142 -93407030 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 818 31 0 0 0 chr9 30669184 30669215 -93406957 + AT_rich Low_complexity Low_complexity 1 31 0 2 818 219 157 0 0 chr9 30669447 30669498 -93406674 + G-rich Low_complexity Low_complexity 1 51 0 2 818 907 297 126 16 chr9 30669676 30670176 -93405996 + L1MDa LINE L1 3508 4062 -2475 2 818 252 267 27 0 chr9 30670342 30670417 -93405755 + L1MDa LINE L1 4083 4159 -2378 2 818 368 193 12 24 chr9 30670453 30670538 -93405634 + PB1D10 SINE Alu 28 111 -6 2 818 459 133 13 0 chr9 30670758 30670833 -93405339 - ID_B1 SINE B4 -8 216 141 2 102 369 214 259 0 chr9 30670833 30670870 -93405302 - B1F1 SINE Alu -8 141 1 2 819 321 336 30 30 chr9 30670959 30671091 -93405081 + L1MDa LINE L1 4502 4633 -1904 2 819 371 270 53 13 chr9 30671097 30671247 -93404925 + L1MDa LINE L1 5694 5849 -784 2 819 280 281 52 0 chr9 30671778 30671874 -93404298 + PB1D10 SINE Alu 12 112 -5 2 819 718 292 136 40 chr9 30671900 30672499 -93403673 + L1MCa LINE L1 800 1439 -5069 2 819 2754 119 25 16 chr9 30672499 30672943 -93403229 + Lx2 LINE L1 6550 6997 0 2 819 718 292 136 40 chr9 30672943 30673064 -93403108 + L1MCa LINE L1 1440 1588 -4920 2 819 675 257 184 41 chr9 30673078 30673394 -93402778 + ORR1D2 LTR MaLR 1 361 -13 2 819 242 342 0 0 chr9 30673501 30673580 -93402592 + L1MCa LINE L1 2048 2126 -4382 2 819 41904 9 1 6 chr9 30673581 30680174 -93395998 - L1Md_A LINE L1 0 6582 23 2 819 377 250 67 25 chr9 30680280 30680399 -93395773 + B3A SINE B2 7 130 -68 2 819 384 222 0 92 chr9 30680433 30680552 -93395620 + L1MCa LINE L1 2201 2308 -4200 2 819 764 85 0 0 chr9 30680554 30680660 -93395512 + B2_Mm2 SINE B2 2 107 -88 2 819 411 198 152 41 chr9 30680663 30680841 -93395331 + L1MCa LINE L1 2271 2466 -3855 2 819 341 268 0 0 chr9 30680848 30680919 -93395253 + ID4 SINE ID 13 83 0 2 819 1283 254 105 51 chr9 30680996 30681510 -93394662 + L1MCa LINE L1 2651 3192 -3129 2 819 1335 228 288 42 chr9 30681512 30681940 -93394232 + Lx7 LINE L1 6990 7523 -173 2 819 327 96 0 0 chr9 30681940 30681992 -93394180 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 819 626 189 48 67 chr9 30681992 30682006 -93394166 + Lx7 LINE L1 7524 7536 -160 2 819 1292 68 14 77 chr9 30682006 30682055 -93394117 - B2_Mm2 SINE B2 0 195 162 2 819 333 0 0 0 chr9 30682055 30682092 -93394080 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2 819 1292 68 14 77 chr9 30682092 30682249 -93393923 - B2_Mm2 SINE B2 -34 161 2 2 819 626 189 48 67 chr9 30682249 30682409 -93393763 + Lx7 LINE L1 7537 7695 -1 2 819 1455 247 161 66 chr9 30682429 30682722 -93393450 + L1MCa LINE L1 3205 3518 -2803 2 819 343 287 0 87 chr9 30682722 30682848 -93393324 + PB1D10 SINE Alu 1 115 -2 2 819 189 0 0 0 chr9 30682857 30682878 -93393294 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2 819 771 236 131 6 chr9 30682878 30683061 -93393111 - B3 SINE B2 -7 209 4 2 819 1455 247 161 66 chr9 30683061 30683481 -93392691 + L1MCa LINE L1 3519 3997 -2324 2 819 460 197 34 0 chr9 30683811 30683928 -93392244 + Lx6 LINE L1 7336 7456 -4 2 819 273 57 0 0 chr9 30684658 30684693 -93391479 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 819 188 222 22 0 chr9 30684702 30684747 -93391425 - L4 LINE RTE -298 1731 1686 2 819 1112 284 94 26 chr9 30685390 30685972 -93390200 + L1MA4 LINE L1 5422 6043 -257 2 819 1533 62 16 0 chr9 30687831 30688023 -93388149 + B2_Mm2 SINE B2 1 195 0 2 819 217 290 99 43 chr9 30688218 30688369 -93387803 - MIR SINE MIR -22 246 85 2 819 1310 60 53 37 chr9 30689626 30689815 -93386357 + B2_Mm2 SINE B2 4 195 0 2 819 21 0 0 0 chr9 30690094 30690115 -93386057 + AT_rich Low_complexity Low_complexity 1 21 0 2 819 961 264 12 58 chr9 30690187 30690288 -93385884 + Lx9 LINE L1 7187 7285 -359 2 819 1634 195 105 12 chr9 30690288 30690630 -93385542 + ORR1D1 LTR MaLR 1 374 0 2 819 961 264 12 58 chr9 30690630 30690874 -93385298 + Lx9 LINE L1 7286 7516 -128 2 819 198 71 0 0 chr9 30690879 30690907 -93385265 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 819 231 95 23 45 chr9 30690911 30690955 -93385217 + U2 snRNA snRNA 1 43 -145 2 819 2345 157 8 0 chr9 30691628 30692017 -93384155 - MTC LTR MaLR -20 401 10 2 819 449 17 17 0 chr9 30692153 30692211 -93383961 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 819 304 190 0 0 chr9 30692480 30692538 -93383634 + MLT1C LTR MaLR 334 391 -76 3 819 675 94 0 0 chr9 30692538 30692634 -93383538 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 819 246 185 0 0 chr9 30692697 30692751 -93383421 - L1M5 LINE L1 -418 5822 5769 3 819 189 302 0 0 chr9 30694178 30694241 -93381931 + MIR SINE MIR 120 182 -80 3 819 318 50 0 0 chr9 30695108 30695148 -93381024 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 3 819 462 36 0 0 chr9 30695217 30695273 -93380899 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 819 2610 164 115 15 chr9 30696381 30696901 -93379271 + RMER15 LTR ERVL 1 572 -3 3 819 193 320 12 25 chr9 30697208 30697288 -93378884 + L2b LINE L2 3081 3159 -228 3 819 1476 197 98 123 chr9 30697597 30697804 -93378368 + MTD LTR MaLR 1 206 -213 3 819 1192 48 7 0 chr9 30697804 30697950 -93378222 + B1_Mus1 SINE Alu 2 148 0 3 819 1476 197 98 123 chr9 30697950 30697979 -93378193 + MTD LTR MaLR 207 207 -212 3 819 1251 94 0 0 chr9 30697979 30698159 -93378013 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 819 594 0 0 0 chr9 30698168 30698234 -93377938 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 3 819 1476 197 98 123 chr9 30698234 30698415 -93377757 + MTD LTR MaLR 207 418 -1 3 819 1598 189 166 87 chr9 30698461 30698955 -93377217 + MT2A LTR ERVL 1 533 0 3 819 322 279 0 0 chr9 30699669 30699683 -93376489 - ID4_ SINE ID -64 88 40 3 819 363 172 0 0 chr9 30699683 30699741 -93376431 - tRNA-Ala-GCY_ tRNA tRNA -7 68 11 3 819 240 240 87 77 chr9 30699738 30699842 -93376330 + MT2B LTR ERVL 130 234 -367 3 819 388 187 49 9 chr9 30699780 30699882 -93376290 + PB1D9 SINE Alu 2 119 -1 3 819 502 271 64 7 chr9 30699893 30700034 -93376138 + RSINE1 SINE B4 12 160 -5 3 819 204 67 0 0 chr9 30700616 30700646 -93375526 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 3 819 647 199 58 22 chr9 30700646 30700780 -93375392 - B1_Mur3 SINE Alu -5 144 5 3 819 310 274 0 31 chr9 30701290 30701388 -93374784 + MLT1A1 LTR MaLR 314 408 0 3 819 1916 124 3 53 chr9 30701427 30701750 -93374422 + ORR1A2 LTR MaLR 1 307 -20 3 819 342 0 0 0 chr9 30701859 30701897 -93374275 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 819 495 0 0 0 chr9 30701897 30701951 -93374221 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 819 296 232 0 0 chr9 30701951 30702020 -93374152 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 819 875 232 57 143 chr9 30702029 30702330 -93373842 - B4 SINE B4 -2 290 16 3 819 335 250 155 45 chr9 30702516 30702671 -93373501 + L1M5 LINE L1 5579 5750 -490 3 819 478 262 9 0 chr9 30703007 30703114 -93373058 - PB1D10 SINE Alu -5 112 5 3 819 336 83 0 0 chr9 30704670 30704718 -93371454 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 819 3942 89 8 59 chr9 30705381 30706012 -93370160 - MT2B LTR ERVL -2 599 1 3 819 266 0 29 0 chr9 30706200 30706234 -93369938 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 819 1276 146 18 0 chr9 30707740 30707960 -93368212 + URR1B DNA MER1_type 2 225 0 3 819 793 169 0 20 chr9 30710755 30710906 -93365266 + MTC LTR MaLR 1 148 -273 3 819 229 26 53 0 chr9 30711268 30711306 -93364866 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 3 819 1525 144 119 0 chr9 30711455 30711740 -93364432 - MTC LTR MaLR -102 319 1 3 819 333 140 0 0 chr9 30711851 30711908 -93364264 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 3 819 548 260 57 38 chr9 30712895 30713107 -93363065 - Charlie4a DNA MER1_type -184 324 109 3 819 514 152 99 20 chr9 30713150 30713251 -93362921 + PB1D9 SINE Alu 7 115 -5 3 819 253 265 40 20 chr9 30713259 30713359 -93362813 - Charlie4a DNA MER1_type -377 131 30 3 819 339 154 0 0 chr9 30713976 30714041 -93362131 + GA-rich Low_complexity Low_complexity 1 65 0 3 819 182 333 15 0 chr9 30714119 30714185 -93361987 + MIR3 SINE MIR 6 72 -136 3 819 604 330 136 46 chr9 30715334 30715921 -93360251 - L2 LINE L2 -411 3008 2369 3 819 345 287 47 47 chr9 30716020 30716170 -93360002 - L2 LINE L2 -2093 1326 1177 3 819 728 267 108 54 chr9 30717314 30717591 -93358581 + B4A SINE B4 1 292 0 3 819 550 180 5 38 chr9 30717599 30717784 -93358388 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 819 246 231 20 20 chr9 30717803 30717949 -93358223 + (CA)n Simple_repeat Simple_repeat 1 146 0 3 819 591 78 0 0 chr9 30717950 30718040 -93358132 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 819 474 189 0 0 chr9 30720650 30720761 -93355411 + (TG)n Simple_repeat Simple_repeat 1 111 0 3 819 301 109 0 0 chr9 30720761 30720807 -93355365 - HAL1-3A_ME LINE L1 -838 2020 1975 3 819 906 144 0 0 chr9 30720837 30721017 -93355155 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 819 1144 67 18 6 chr9 30721354 30721520 -93354652 + (TTCCC)n Simple_repeat Simple_repeat 5 172 0 3 819 219 288 105 9 chr9 30721874 30721979 -93354193 + MIR SINE MIR 16 130 -78 3 819 387 288 104 24 chr9 30724586 30724750 -93351422 - MIRb SINE MIR -80 188 12 3 819 993 210 41 0 chr9 30724913 30725108 -93351064 + B3 SINE B2 8 210 -6 3 819 252 211 193 0 chr9 30725143 30725200 -93350972 + B1F1 SINE Alu 31 98 -51 3 819 809 253 21 37 chr9 30725497 30725669 -93350503 + B3A SINE B2 5 178 -20 3 819 306 0 0 0 chr9 30725669 30725703 -93350469 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 819 809 253 21 37 chr9 30725703 30725719 -93350453 + B3A SINE B2 179 190 -8 3 819 351 0 0 0 chr9 30726067 30726106 -93350066 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 819 252 0 0 0 chr9 30728801 30728829 -93347343 + (A)n Simple_repeat Simple_repeat 1 28 0 3 819 225 235 88 66 chr9 30730449 30730540 -93345632 - MamGypLTR1c LTR Gypsy -399 404 312 3 819 644 165 0 15 chr9 30730739 30730874 -93345298 + MER63D DNA AcHobo 54 186 -875 3 819 667 254 80 16 chr9 30731397 30731585 -93344587 + B3 SINE B2 1 200 -16 3 819 387 0 0 0 chr9 30731585 30731628 -93344544 + (TAAAA)n Simple_repeat Simple_repeat 5 47 0 3 819 7905 45 2 0 chr9 30732536 30733611 -93342561 - L1Md_F2 LINE L1 -12 6570 5494 3 819 510 114 28 9 chr9 30733945 30734051 -93342121 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 3 819 393 39 0 0 chr9 30734081 30734132 -93342040 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 819 230 370 25 59 chr9 30734144 30734348 -93341824 + MIR SINE MIR 64 260 -2 3 819 201 147 0 0 chr9 30734369 30734403 -93341769 + (CAT)n Simple_repeat Simple_repeat 2 35 0 3 819 340 340 28 28 chr9 30734865 30735010 -93341162 - RSINE1 SINE B4 0 165 21 3 819 225 94 0 0 chr9 30735038 30735070 -93341102 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 819 216 314 48 19 chr9 30735084 30735188 -93340984 + L2a LINE L2 3319 3425 -1 3 819 249 244 0 37 chr9 30737112 30737193 -93338979 + Lx8 LINE L1 7395 7472 -1 3 819 210 315 87 35 chr9 30737286 30737401 -93338771 - MIRc SINE MIR -31 237 117 3 819 7787 48 1 4 chr9 30737433 30738592 -93337580 - L1Md_F2 LINE L1 0 6582 5430 3 819 478 263 41 41 chr9 30738610 30738721 -93337451 + RSINE1 SINE B4 43 154 -11 3 819 1020 96 0 0 chr9 30738721 30738867 -93337305 + (TC)n Simple_repeat Simple_repeat 1 146 0 3 819 478 263 41 41 chr9 30738867 30738878 -93337294 + RSINE1 SINE B4 155 165 0 3 819 996 203 53 0 chr9 30740892 30741079 -93335093 + B3 SINE B2 2 198 -18 3 819 544 319 60 34 chr9 30741081 30741379 -93334793 - Lx8 LINE L1 -312 7161 6856 3 819 388 236 0 0 chr9 30741571 30741643 -93334529 - ID4 SINE ID -10 73 2 3 819 394 289 9 0 chr9 30741643 30741757 -93334415 - PB1D10 SINE Alu -2 115 1 3 819 432 0 0 0 chr9 30742366 30742414 -93333758 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 819 600 277 48 26 chr9 30742790 30742979 -93333193 + B3 SINE B2 24 216 0 3 819 409 296 52 29 chr9 30743965 30744101 -93332071 - HAL1-2a_MD LINE L1 -487 2537 2399 3 819 1187 100 0 11 chr9 30745663 30745845 -93330327 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 819 1187 85 0 9 chr9 30745854 30746068 -93330104 + (GAA)n Simple_repeat Simple_repeat 1 211 0 3 819 214 217 22 0 chr9 30746320 30746366 -93329806 + MIRb SINE MIR 214 260 -8 3 819 494 240 11 176 chr9 30746861 30747043 -93329129 + B4A SINE B4 125 276 -16 3 819 232 250 0 158 chr9 30747009 30747104 -93329068 + B3A SINE B2 117 196 -2 3 819 1099 212 35 0 chr9 30747120 30747323 -93328849 + B3 SINE B2 1 210 -6 3 819 21 57 0 0 chr9 30747404 30747439 -93328733 + AT_rich Low_complexity Low_complexity 1 35 0 3 819 189 0 0 0 chr9 30747514 30747535 -93328637 + (A)n Simple_repeat Simple_repeat 1 21 0 3 819 514 279 129 30 chr9 30747681 30747914 -93328258 - Cheshire DNA MER1_type -2163 257 2 3 819 251 255 32 138 chr9 30748478 30748601 -93327571 + PB1 SINE Alu 16 125 -2 3 819 320 195 20 112 chr9 30748505 30748603 -93327569 + ID_B1 SINE B4 135 223 -1 3 819 22 0 0 0 chr9 30750500 30750522 -93325650 + GC_rich Low_complexity Low_complexity 1 22 0 3 819 1465 93 0 5 chr9 30753302 30753497 -93322675 + B2_Mm2 SINE B2 2 195 0 3 819 282 270 64 106 chr9 30753850 30753991 -93322181 + MIRc SINE MIR 5 139 -129 3 819 310 303 97 16 chr9 30755161 30755285 -93320887 + MIR SINE MIR 109 242 -20 3 819 1489 75 5 0 chr9 30755862 30756049 -93320123 - B2_Mm1a SINE B2 -5 188 1 3 819 423 0 0 0 chr9 30757527 30757574 -93318598 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 819 207 0 0 0 chr9 30757767 30757790 -93318382 + (A)n Simple_repeat Simple_repeat 1 23 0 3 819 231 279 118 0 chr9 30758583 30758651 -93317521 + MIRb SINE MIR 36 111 -157 3 819 309 89 0 0 chr9 30759762 30759807 -93316365 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 819 447 19 0 0 chr9 30759999 30760051 -93316121 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 819 242 340 136 0 chr9 30763634 30763781 -93312391 - MER20 DNA MER1_type -52 167 1 4 819 191 319 93 36 chr9 30763818 30763958 -93312214 - L2a LINE L2 -4 3422 3275 4 819 195 42 0 0 chr9 30764861 30764885 -93311287 + (T)n Simple_repeat Simple_repeat 1 24 0 4 819 405 0 0 0 chr9 30766297 30766342 -93309830 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 819 183 306 81 0 chr9 30767534 30767596 -93308576 - MIR SINE MIR -76 132 66 4 819 856 158 12 0 chr9 30767606 30767777 -93308395 + CT-rich Low_complexity Low_complexity 1 173 0 4 819 1402 22 0 11 chr9 30767777 30767957 -93308215 + (TTC)n Simple_repeat Simple_repeat 1 178 0 4 819 256 171 0 0 chr9 30767957 30767998 -93308174 + CT-rich Low_complexity Low_complexity 3 43 0 4 819 230 266 63 133 chr9 30768071 30768214 -93307958 + LTR68 LTR ERV1 255 387 -353 4 819 295 254 0 14 chr9 30768252 30768324 -93307848 + CT-rich Low_complexity Low_complexity 3 73 0 4 819 253 222 44 110 chr9 30768663 30768754 -93307418 - Charlie26a DNA MER1_type -182 143 59 4 819 738 302 50 28 chr9 30770855 30771073 -93305099 - ID_B1 SINE B4 0 224 2 4 819 244 207 0 17 chr9 30771423 30771450 -93304722 + polypurine Low_complexity Low_complexity 2 27 0 4 819 695 318 42 31 chr9 30771450 30771716 -93304456 + B4A SINE B4 1 269 -23 4 819 536 73 12 0 chr9 30771716 30771798 -93304374 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 819 695 318 42 31 chr9 30771798 30771817 -93304355 + B4A SINE B4 270 288 -4 4 819 244 207 0 17 chr9 30771817 30771848 -93304324 + polypurine Low_complexity Low_complexity 28 58 0 4 819 401 322 17 0 chr9 30772841 30772956 -93303216 + PB1D10 SINE Alu 1 117 0 4 819 324 250 0 24 chr9 30773365 30773447 -93302725 + ID4_ SINE ID 2 81 -2 4 819 771 50 0 0 chr9 30773717 30773816 -93302356 - B1_Mus2 SINE Alu -9 138 40 4 819 600 204 0 0 chr9 30773827 30774003 -93302169 + CT-rich Low_complexity Low_complexity 2 177 0 4 819 408 70 35 0 chr9 30774016 30774073 -93302099 - B1_Mus2 SINE Alu -88 59 1 4 819 367 239 215 42 chr9 30774407 30774551 -93301621 - MER121 Unknown Unknown -101 311 143 4 819 215 354 47 30 chr9 30774708 30775008 -93301164 + L2 LINE L2 893 1197 -2222 4 819 375 325 130 0 chr9 30775052 30775221 -93300951 - LSU-rRNA_Hsa rRNA rRNA -2190 2845 2655 4 819 187 364 31 49 chr9 30776355 30776517 -93299655 - L2 LINE L2 -452 2967 2809 4 819 284 173 0 53 chr9 30776544 30776610 -93299562 - B2_Mm2 SINE B2 -107 109 47 4 819 1164 125 11 11 chr9 30776643 30776821 -93299351 - B2_Mm1t SINE B2 -14 179 2 4 819 476 260 0 10 chr9 30776884 30776985 -93299187 - PB1D9 SINE Alu -20 100 1 4 819 352 182 20 129 chr9 30776895 30776996 -93299176 - MT2B LTR ERVL -357 244 155 4 819 264 208 146 36 chr9 30777533 30777643 -93298529 + L2 LINE L2 1924 2045 -1374 4 819 275 258 41 41 chr9 30778216 30778313 -93297859 - MER68 LTR ERVL -450 113 17 4 819 1154 88 0 0 chr9 30778604 30778751 -93297421 + B1_Mus1 SINE Alu 2 148 0 4 819 1002 139 45 23 chr9 30778756 30778933 -93297239 - B2_Mm2 SINE B2 -14 181 1 4 819 1123 206 29 5 chr9 30779105 30779315 -93296857 + B3 SINE B2 1 215 -1 4 819 216 0 0 0 chr9 30779336 30779360 -93296812 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 4 819 235 304 30 64 chr9 30780215 30780364 -93295808 + MIRc SINE MIR 2 147 -129 4 819 801 300 54 115 chr9 30780781 30780855 -93295317 + RLTR20D LTR ERVK 1 64 -441 4 819 1114 83 7 0 chr9 30780855 30781000 -93295172 + B1_Mus1 SINE Alu 3 148 0 4 819 1635 235 97 20 chr9 30781000 30781372 -93294800 + RLTR20D LTR ERVK 65 469 -99 4 819 329 0 24 0 chr9 30781372 30781413 -93294759 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 819 1635 232 98 16 chr9 30781413 30781503 -93294669 + RLTR20D LTR ERVK 470 567 -1 4 819 736 297 52 30 chr9 30781787 30781921 -93294251 + Lx8 LINE L1 7077 7211 -262 4 819 1875 164 76 22 chr9 30781921 30782276 -93293896 + ORR1D1 LTR MaLR 1 374 0 4 819 736 297 52 30 chr9 30782276 30782408 -93293764 + Lx8 LINE L1 7212 7349 -124 4 819 1269 55 91 0 chr9 30782408 30782573 -93293599 + B2_Mm2 SINE B2 2 181 -14 4 819 731 138 246 0 chr9 30782617 30782784 -93293388 - MTC LTR MaLR -210 211 4 4 819 762 192 131 0 chr9 30782799 30783028 -93293144 + Lx9 LINE L1 7378 7636 -8 4 819 606 109 0 0 chr9 30783077 30783169 -93293003 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 819 2100 128 83 9 chr9 30783254 30783592 -93292580 + ORR1B2 LTR MaLR 5 367 0 4 819 252 0 0 0 chr9 30783727 30783755 -93292417 + (TTAG)n Simple_repeat Simple_repeat 3 30 0 4 819 2211 102 9 56 chr9 30785723 30786065 -93290107 + ORR1A3 LTR MaLR 1 326 0 4 819 1154 77 0 12 chr9 30786076 30786246 -93289926 + B2_Mm2 SINE B2 3 170 -25 4 819 458 259 21 28 chr9 30786286 30786429 -93289743 - L1MA6 LINE L1 -31 6269 6128 4 819 180 0 0 0 chr9 30786441 30786461 -93289711 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 4 819 596 240 103 32 chr9 30786468 30786653 -93289519 - B3A SINE B2 0 198 1 4 819 1115 225 55 4 chr9 30786653 30786925 -93289247 - L1MA6 LINE L1 -163 6137 5852 4 819 1132 227 28 4 chr9 30786916 30787168 -93289004 + L1M2 LINE L1 4063 4320 -1823 4 819 1147 90 6 6 chr9 30787216 30787273 -93288899 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 4 819 2329 75 126 11 chr9 30787273 30787623 -93288549 - RLTR10 LTR ERVK 0 390 1 4 819 1147 90 6 6 chr9 30787623 30787743 -93288429 + (GGAA)n Simple_repeat Simple_repeat 3 122 0 4 819 460 195 0 0 chr9 30787770 30787847 -93288325 + B3A SINE B2 1 77 -121 4 819 1126 214 8 4 chr9 30787926 30788161 -93288011 + L1M2 LINE L1 4421 4656 -1487 4 819 360 0 0 0 chr9 30788486 30788526 -93287646 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 819 333 47 0 0 chr9 30788573 30788616 -93287556 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 819 636 74 0 0 chr9 30788617 30788712 -93287460 + (TG)n Simple_repeat Simple_repeat 2 96 0 4 819 1149 216 26 69 chr9 30789473 30789776 -93286396 + B4 SINE B4 3 292 0 4 819 186 43 0 0 chr9 30789811 30789834 -93286338 + (CAA)n Simple_repeat Simple_repeat 1 23 0 4 819 638 272 6 55 chr9 30789852 30790035 -93286137 - B3 SINE B2 -34 182 9 4 819 572 224 17 0 chr9 30790486 30790602 -93285570 + PB1D9 SINE Alu 3 120 0 4 819 333 282 0 13 chr9 30791128 30791207 -93284965 + B3A SINE B2 1 78 -120 4 819 321 26 0 0 chr9 30791342 30791380 -93284792 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 819 746 275 22 38 chr9 30791485 30791670 -93284502 + B3A SINE B2 1 182 -16 4 819 32 0 0 23 chr9 30791673 30791691 -93284481 + AT_rich Low_complexity Low_complexity 1 18 0 4 819 1254 102 28 0 chr9 30791691 30791868 -93284304 + B2_Mm2 SINE B2 2 183 -12 4 819 32 0 0 23 chr9 30791868 30791892 -93284280 + AT_rich Low_complexity Low_complexity 1 24 0 4 819 257 364 0 25 chr9 30791955 30792034 -93284138 + ID4 SINE ID 1 77 -6 4 819 229 345 11 67 chr9 30792034 30792045 -93284127 + ID SINE ID 1 85 -139 4 819 695 60 0 19 chr9 30792565 30792668 -93283504 - B1_Mus2 SINE Alu 0 147 47 4 819 294 141 75 45 chr9 30792610 30792677 -93283495 - RLTR25B LTR ERVK -519 509 441 4 819 319 134 55 9 chr9 30793280 30793345 -93282827 + B1_Mur4 SINE Alu 1 65 -84 4 819 632 227 33 0 chr9 30794178 30794328 -93281844 - B3A SINE B2 -5 193 39 4 819 6559 194 34 32 chr9 30794330 30794540 -93281632 - Lx7 LINE L1 -233 7463 7244 4 819 1761 103 127 3 chr9 30794540 30794831 -93281341 + ORR1A2 LTR MaLR 1 327 0 4 819 6559 194 34 32 chr9 30794831 30795278 -93280894 - Lx7 LINE L1 -453 7243 6798 4 819 2313 136 0 64 chr9 30795278 30795670 -93280502 - ORR1B2 LTR MaLR 0 367 1 4 819 6559 194 34 32 chr9 30795670 30796343 -93279829 - Lx7 LINE L1 -899 6797 6129 4 819 276 258 99 22 chr9 30796343 30796434 -93279738 - PB1D10 SINE Alu -19 98 1 4 819 6559 194 34 32 chr9 30796434 30796446 -93279726 - Lx7 LINE L1 -1568 6128 6117 4 819 366 260 10 0 chr9 30796450 30796546 -93279626 - Tigger7 DNA MER2_type -256 2235 2139 4 819 439 305 26 13 chr9 30796537 30796693 -93279479 - Tigger7 DNA MER2_type -2203 288 131 4 819 567 163 0 0 chr9 30796702 30796800 -93279372 + MTC LTR MaLR 1 98 -323 4 819 862 207 88 5 chr9 30797291 30797485 -93278687 + B3 SINE B2 1 210 -6 4 819 474 18 0 0 chr9 30798016 30798071 -93278101 + (TATG)n Simple_repeat Simple_repeat 2 56 0 4 819 562 172 455 27 chr9 30798364 30798590 -93277582 + ORR1D2 LTR MaLR 13 339 -31 4 819 395 291 18 0 chr9 30798588 30798698 -93277474 - B4 SINE B4 -179 113 2 4 819 833 156 0 28 chr9 30798746 30798891 -93277281 + B1_Mur4 SINE Alu 9 149 -1 4 819 936 87 0 0 chr9 30798910 30799037 -93277135 + B1_Mus1 SINE Alu 11 137 -11 4 819 649 126 94 70 chr9 30799100 30799228 -93276944 - B1_Mus2 SINE Alu -15 132 2 4 819 794 119 17 0 chr9 30799667 30799785 -93276387 - PB1D9 SINE Alu 0 120 1 4 819 522 275 21 26 chr9 30799785 30799979 -93276193 - L1M5 LINE L1 -1226 4920 4728 4 819 994 249 148 0 chr9 30799982 30800312 -93275860 + MTE2a LTR MaLR 1 379 0 4 819 435 343 104 70 chr9 30800462 30800962 -93275210 + LTR78 LTR ERV1 509 1041 -263 4 819 1894 165 86 23 chr9 30800962 30801358 -93274814 - MTC LTR MaLR 0 421 1 4 819 435 343 104 70 chr9 30801358 30801396 -93274776 + LTR78 LTR ERV1 1042 1077 -227 4 819 1419 75 5 11 chr9 30801396 30801585 -93274587 - B2_Mm2 SINE B2 -6 189 2 4 819 435 343 104 70 chr9 30801585 30801641 -93274531 + LTR78 LTR ERV1 1078 1124 -180 4 819 328 287 11 0 chr9 30801791 30801885 -93274287 - Lx8 LINE L1 -674 6799 6705 4 820 393 345 17 6 chr9 30801939 30802114 -93274058 - B4A SINE B4 -113 179 3 4 820 1239 41 0 0 chr9 30802342 30802489 -93273683 + B1_Mus2 SINE Alu 1 147 0 4 820 477 0 0 0 chr9 30802784 30802837 -93273335 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 4 820 802 143 14 21 chr9 30802843 30802986 -93273186 + B1_Mur3 SINE Alu 6 147 -2 4 820 336 391 21 46 chr9 30803159 30803400 -93272772 + MLT1K LTR MaLR 28 262 -333 5 820 651 66 0 0 chr9 30803536 30803627 -93272545 - BC1_Mm scRNA scRNA -61 91 1 5 820 306 0 0 0 chr9 30803632 30803666 -93272506 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 5 820 947 156 59 12 chr9 30803810 30803979 -93272193 + B2_Mm2 SINE B2 2 178 -17 5 820 488 59 15 0 chr9 30804005 30804073 -93272099 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 820 1060 63 14 27 chr9 30806205 30806352 -93269820 + B1_Mus2 SINE Alu 1 145 -2 5 820 277 255 19 10 chr9 30806455 30806558 -93269614 + CT-rich Low_complexity Low_complexity 1 104 0 5 820 413 36 18 0 chr9 30806560 30806615 -93269557 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 820 2480 141 34 12 chr9 30806899 30807307 -93268865 + MTC LTR MaLR 1 417 -4 5 820 346 291 8 49 chr9 30808990 30809113 -93267059 + L1MB3 LINE L1 315 432 -6175 5 820 787 194 25 13 chr9 30809145 30809302 -93266870 + URR1B DNA MER1_type 5 163 -62 5 820 502 312 0 0 chr9 30809368 30809496 -93266676 + RSINE1 SINE B4 4 131 -34 5 820 369 276 193 26 chr9 30809734 30810163 -93266009 + L1MB3 LINE L1 866 1378 -5229 5 820 567 303 51 8 chr9 30810163 30810399 -93265773 + MLT1A0 LTR MaLR 1 246 -119 5 820 715 283 217 24 chr9 30810506 30811169 -93265003 + L1MB3 LINE L1 1369 2159 -4590 5 820 1298 106 11 11 chr9 30811288 30811478 -93264694 + B2_Mm1t SINE B2 2 191 -2 5 820 283 321 117 110 chr9 30811493 30811766 -93264406 + MLT1C LTR MaLR 6 280 -187 5 820 1600 185 59 35 chr9 30811858 30812284 -93263888 + RMER10A LTR ERVL 1 436 -6 5 820 242 267 53 0 chr9 30812340 30812415 -93263757 + MLT1C LTR MaLR 389 467 0 5 820 745 117 56 38 chr9 30812433 30812593 -93263579 + B2_Mm2 SINE B2 25 187 -8 5 820 22 35 0 0 chr9 30812626 30812655 -93263517 + AT_rich Low_complexity Low_complexity 1 29 0 5 820 273 228 18 0 chr9 30812753 30812810 -93263362 + B1_Mur3 SINE Alu 68 125 -24 5 820 4534 92 78 0 chr9 30812966 30813595 -93262577 + RLTR33 LTR ERVK 1 678 0 5 820 328 194 222 0 chr9 30813620 30813728 -93262444 + L1MB3 LINE L1 4863 4994 -1747 5 820 1013 72 0 0 chr9 30813735 30813874 -93262298 + B1_Mus2 SINE Alu 9 147 0 5 820 663 246 45 45 chr9 30813919 30814098 -93262074 + ID_B1 SINE B4 46 224 0 5 820 872 278 67 32 chr9 30814123 30814395 -93261777 + L1MB3 LINE L1 5108 5387 -1354 5 820 2349 136 45 23 chr9 30814395 30814793 -93261379 - MTB_Mm LTR MaLR 0 407 1 5 820 872 278 67 32 chr9 30814793 30814866 -93261306 + L1MB3 LINE L1 5388 5465 -1276 5 820 284 265 48 12 chr9 30814875 30814959 -93261213 + PB1D10 SINE Alu 18 104 -13 5 820 21 36 0 0 chr9 30814965 30814993 -93261179 + AT_rich Low_complexity Low_complexity 1 28 0 5 820 978 301 86 5 chr9 30815040 30815480 -93260692 + L1MB3 LINE L1 6239 6714 -70 5 820 656 236 0 30 chr9 30815509 30815640 -93260532 + B1_Mur3 SINE Alu 2 128 -21 5 820 1244 41 0 0 chr9 30815699 30815846 -93260326 + B1_Mus2 SINE Alu 1 147 0 5 820 306 0 0 0 chr9 30815846 30815880 -93260292 + (A)n Simple_repeat Simple_repeat 1 34 0 5 820 242 310 103 0 chr9 30816002 30816089 -93260083 + PB1D10 SINE Alu 1 96 -21 5 820 279 312 41 89 chr9 30816013 30816100 -93260072 + ID_B1 SINE B4 95 186 -38 5 820 1425 75 16 5 chr9 30816100 30816289 -93259883 + B2_Mm2 SINE B2 2 192 -3 5 820 279 312 41 89 chr9 30816289 30816324 -93259848 + ID_B1 SINE B4 187 211 -13 5 820 348 244 66 57 chr9 30816472 30816594 -93259578 - MTEb LTR MaLR 0 379 257 5 820 422 296 6 70 chr9 30816634 30816805 -93259367 - RSINE1 SINE B4 -4 161 2 5 820 273 211 27 27 chr9 30816848 30816921 -93259251 + RLTR25B LTR ERVK 425 497 -531 5 820 785 40 0 0 chr9 30816864 30816965 -93259207 + B1_Mm SINE Alu 41 141 -6 5 820 292 22 44 0 chr9 30816966 30817011 -93259161 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 5 820 277 282 13 0 chr9 30817051 30817129 -93259043 - MTEb LTR MaLR -230 129 51 5 820 1582 191 57 79 chr9 30817519 30817939 -93258233 - RLTR41 LTR ERV1 0 446 36 5 820 647 29 120 56 chr9 30818108 30818216 -93257956 + B1_Mm SINE Alu 33 147 0 5 820 644 206 53 0 chr9 30818866 30818997 -93257175 + B1_Mur3 SINE Alu 2 139 -10 5 820 768 225 68 34 chr9 30819143 30819350 -93256822 - MLT2C1 LTR ERVL -4 393 180 5 820 606 321 26 10 chr9 30819353 30819548 -93256624 + MTD LTR MaLR 5 202 -217 5 820 674 259 111 29 chr9 30819622 30819829 -93256343 + B4A SINE B4 1 224 -68 5 820 616 283 18 6 chr9 30819843 30819926 -93256246 + B4A SINE B4 2 86 -206 5 820 215 279 45 55 chr9 30819926 30820036 -93256136 + PB1D7 SINE Alu 1 109 -11 5 820 438 20 0 0 chr9 30820128 30820179 -93255993 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 820 258 265 44 0 chr9 30820188 30820256 -93255916 + B4A SINE B4 219 289 -3 5 820 914 249 146 30 chr9 30820338 30820713 -93255459 + MTD LTR MaLR 1 404 -15 5 820 1118 48 7 40 chr9 30820765 30820916 -93255256 + B1_Mus2 SINE Alu 2 147 0 5 820 180 135 0 0 chr9 30820916 30820953 -93255219 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 5 820 254 292 43 43 chr9 30821071 30821164 -93255008 + RSINE1 SINE B4 73 165 0 5 820 480 148 80 0 chr9 30821201 30821289 -93254883 - MLT2C2 LTR ERVL -352 112 18 5 820 404 264 45 45 chr9 30821453 30821608 -93254564 - LTR40b LTR ERVL -5 457 303 5 820 538 324 68 14 chr9 30821697 30821919 -93254253 - LTR40b LTR ERVL -147 315 82 5 820 618 14 0 0 chr9 30821984 30822055 -93254117 + (TC)n Simple_repeat Simple_repeat 1 71 0 5 820 222 324 0 53 chr9 30822063 30822138 -93254034 - B1F1 SINE Alu -44 73 3 5 820 248 343 64 9 chr9 30822572 30822681 -93253491 + PB1D10 SINE Alu 1 115 -2 5 820 594 288 7 7 chr9 30822704 30822844 -93253328 + B3A SINE B2 11 150 -48 5 820 225 0 0 0 chr9 30822845 30822870 -93253302 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 820 726 12 0 0 chr9 30822870 30822952 -93253220 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 820 241 171 0 0 chr9 30823031 30823072 -93253100 + ID SINE ID 35 75 -149 5 820 181 390 47 9 chr9 30823341 30823447 -93252725 + MIRb SINE MIR 11 120 -148 5 820 200 270 16 16 chr9 30823792 30823856 -93252316 + L2 LINE L2 1465 1528 -1891 5 820 614 213 39 8 chr9 30823920 30824048 -93252124 - B1_Mur1 SINE Alu -16 133 2 5 820 281 200 123 0 chr9 30824212 30824277 -93251895 - ID_B1 SINE B4 0 224 152 5 820 1133 62 7 0 chr9 30824306 30824451 -93251721 - B1_Mm SINE Alu 0 147 2 5 820 564 99 29 25 chr9 30824452 30824596 -93251576 + B1_Mus1 SINE Alu 5 148 0 5 820 191 32 0 61 chr9 30824598 30824631 -93251541 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 820 403 276 34 25 chr9 30824641 30824760 -93251412 - ID_B1 SINE B4 -91 133 14 5 820 376 302 175 42 chr9 30824958 30825003 -93251169 - MamRep137 DNA TcMar? -45 399 358 5 820 2367 163 55 0 chr9 30825003 30825402 -93250770 + MTC LTR MaLR 1 421 0 5 820 376 302 175 42 chr9 30825402 30825619 -93250553 - MamRep137 DNA TcMar? -87 357 102 5 820 1344 151 0 9 chr9 30825909 30826129 -93250043 - MTC LTR MaLR -8 413 196 5 820 757 162 20 27 chr9 30826195 30826341 -93249831 - B1_Mus1 SINE Alu -1 147 3 5 820 696 197 41 71 chr9 30826344 30826659 -93249513 - RMER16 LTR ERVK -138 395 5 5 820 1703 243 49 30 chr9 30827019 30827485 -93248687 - RMER15-int LTR ERVL -362 4637 4163 5 820 353 253 121 0 chr9 30827543 30827626 -93248546 - RMER15-int LTR ERVL -2612 2387 2295 5 820 302 356 0 19 chr9 30828626 30828729 -93247443 - RMER15-int LTR ERVL -4748 251 151 5 820 230 286 47 19 chr9 30828845 30828952 -93247220 - RMER15 LTR ERVL -44 531 422 5 820 3161 61 5 8 chr9 30829018 30829415 -93246757 + MTA_Mm LTR MaLR 1 396 0 5 820 7940 71 34 11 chr9 30829415 30830262 -93245910 + MTA_Mm-int LTR MaLR 1 866 -232 5 820 1408 65 5 26 chr9 30830262 30830451 -93245721 - B2_Mm1t SINE B2 -8 185 1 5 820 7940 71 34 11 chr9 30830451 30830677 -93245495 + MTA_Mm-int LTR MaLR 867 1098 0 5 820 3105 64 8 8 chr9 30830677 30831073 -93245099 + MTA_Mm LTR MaLR 1 396 0 5 820 279 345 67 0 chr9 30831723 30831842 -93244330 + PB1 SINE Alu 1 127 0 5 820 232 384 62 0 chr9 30832139 30832285 -93243887 + MIR SINE MIR 29 183 -79 5 820 1214 61 0 0 chr9 30832460 30832608 -93243564 - B1_Mus1 SINE Alu 0 148 1 5 820 4819 152 55 76 chr9 30832608 30833527 -93242645 - RMER19B LTR ERVK -2 900 1 5 820 809 238 101 53 chr9 30833770 30834125 -93242047 + L1MC5 LINE L1 7022 7393 -568 5 820 606 294 45 5 chr9 30834254 30834476 -93241696 + L1MB8 LINE L1 5939 6169 -9 5 820 21 0 0 0 chr9 30834483 30834504 -93241668 + AT_rich Low_complexity Low_complexity 1 21 0 5 820 381 240 53 111 chr9 30834945 30835170 -93241002 - RLTR42-int LTR ERVK -4122 1400 1189 5 820 180 97 0 0 chr9 30836382 30836413 -93239759 + (C)n Simple_repeat Simple_repeat 1 31 0 5 820 207 0 0 0 chr9 30836413 30836436 -93239736 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 820 23 0 0 0 chr9 30837949 30837972 -93238200 + GC_rich Low_complexity Low_complexity 1 23 0 5 820 180 97 0 0 chr9 30838036 30838067 -93238105 + (CCCG)n Simple_repeat Simple_repeat 4 34 0 5 820 224 170 19 0 chr9 30838426 30838479 -93237693 + (CCG)n Simple_repeat Simple_repeat 2 55 0 5 820 805 152 34 27 chr9 30839959 30840108 -93236064 - B1_Mur4 SINE Alu 0 150 1 5 820 300 283 72 101 chr9 30840423 30840631 -93235541 - RMER30 DNA MER1_type 0 202 1 5 820 307 342 59 40 chr9 30840665 30840817 -93235355 - L1MC4a LINE L1 -429 7453 7299 5 820 1067 80 72 0 chr9 30841004 30841142 -93235030 - B1_Mus1 SINE Alu 0 148 1 5 820 1203 88 0 0 chr9 30841204 30841352 -93234820 - B1_Mus1 SINE Alu 0 148 1 5 820 1368 96 0 56 chr9 30841548 30841746 -93234426 - B2_Mm2 SINE B2 -7 188 2 5 820 263 325 156 40 chr9 30841746 30841945 -93234227 - L1MC4a LINE L1 -1071 6971 6750 5 820 1303 94 23 0 chr9 30841958 30842129 -93234043 - B2_Mm1t SINE B2 -18 175 1 5 820 620 179 54 0 chr9 30842163 30842275 -93233897 - PB1D9 SINE Alu -1 119 2 5 820 900 236 67 10 chr9 30842508 30842701 -93233471 - B3 SINE B2 -10 206 3 5 820 689 74 471 0 chr9 30842787 30842908 -93233264 + B2_Mm2 SINE B2 3 180 -15 5 820 216 0 0 0 chr9 30842911 30842935 -93233237 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 820 203 156 0 0 chr9 30842989 30843021 -93233151 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 5 820 341 323 101 77 chr9 30843752 30843960 -93232212 - MIRb SINE MIR -9 259 47 5 820 427 246 165 48 chr9 30844363 30844551 -93231621 + ID_B1 SINE B4 7 216 -8 5 820 694 293 231 30 chr9 30844603 30845110 -93231062 + Lx8 LINE L1 6865 7473 0 6 820 396 182 57 66 chr9 30845253 30845359 -93230813 - B3A SINE B2 -92 106 2 6 820 392 250 120 40 chr9 30845719 30845844 -93230328 - B1F SINE Alu -3 146 12 6 820 1590 226 170 10 chr9 30845984 30846395 -93229777 + Lx5 LINE L1 6574 7050 0 6 820 614 223 58 0 chr9 30846525 30846646 -93229526 - B3A SINE B2 -46 152 25 6 820 530 273 129 0 chr9 30847081 30847220 -93228952 - B3 SINE B2 -51 165 9 6 820 525 302 7 21 chr9 30847230 30847372 -93228800 - B4A SINE B4 -73 219 80 6 820 2851 72 53 11 chr9 30847417 30847797 -93228375 + MTA_Mm LTR MaLR 1 396 0 6 820 875 203 7 7 chr9 30847972 30848121 -93228051 + B1_Mur2 SINE Alu 1 149 0 6 820 1682 186 53 84 chr9 30848533 30848653 -93227519 + ORR1C2 LTR MaLR 3 136 -248 6 820 1515 96 0 0 chr9 30848653 30848841 -93227331 - B2_Mm2 SINE B2 -6 189 2 6 820 1682 186 53 84 chr9 30848841 30849114 -93227058 + ORR1C2 LTR MaLR 137 384 0 6 820 438 69 0 0 chr9 30849413 30849471 -93226701 + (T)n Simple_repeat Simple_repeat 1 58 0 6 820 1164 217 64 59 chr9 30849537 30849895 -93226277 + MTE-int LTR MaLR 83 442 -1138 6 820 206 236 0 52 chr9 30850105 30850163 -93226009 - L4 LINE RTE -667 1362 1308 6 820 1137 223 5 36 chr9 30851728 30851947 -93224225 - B3 SINE B2 -3 213 2 6 820 1064 132 126 0 chr9 30852167 30852334 -93223838 + B2_Mm1t SINE B2 1 188 -5 6 820 246 143 0 0 chr9 30852501 30852550 -93223622 + (T)n Simple_repeat Simple_repeat 1 49 0 6 820 460 289 35 65 chr9 30852552 30852576 -93223596 - B2_Mm2 SINE B2 0 195 168 6 820 1274 54 0 0 chr9 30852576 30852723 -93223449 - B1_Mus2 SINE Alu 0 147 1 6 820 743 247 69 0 chr9 30852723 30852898 -93223274 - B3 SINE B2 -29 187 2 6 820 2214 97 6 51 chr9 30853411 30853689 -93222483 + ORR1A2 LTR MaLR 6 284 -43 6 820 1337 107 37 0 chr9 30853689 30853876 -93222296 + B2_Mm2 SINE B2 2 195 0 6 820 2214 97 6 51 chr9 30853876 30853932 -93222240 + ORR1A2 LTR MaLR 285 325 -2 6 820 1035 243 34 42 chr9 30853997 30854259 -93221913 - MTE2b LTR MaLR 0 379 120 6 820 450 0 0 0 chr9 30854267 30854317 -93221855 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 820 192 152 0 0 chr9 30854317 30854350 -93221822 + GA-rich Low_complexity Low_complexity 5 37 0 6 820 444 19 0 0 chr9 30855116 30855169 -93221003 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 820 1336 86 0 17 chr9 30855285 30855463 -93220709 + B2_Mm2 SINE B2 2 176 -19 6 820 1219 49 28 0 chr9 30855470 30855613 -93220559 + B1_Mus2 SINE Alu 1 147 0 6 820 9313 100 50 1 chr9 30855630 30857113 -93219059 + Lx2 LINE L1 5447 6997 0 6 820 1031 63 139 48 chr9 30857402 30857568 -93218604 + B2_Mm2 SINE B2 1 181 -14 6 820 1009 225 47 75 chr9 30857573 30857973 -93218199 - RLTR11B LTR ERVK -36 405 7 6 820 421 303 20 0 chr9 30858014 30858113 -93218059 + B4A SINE B4 28 128 -164 6 820 1524 75 37 0 chr9 30858273 30858460 -93217712 - B2_Mm2 SINE B2 0 195 2 6 820 248 0 31 0 chr9 30859062 30859094 -93217078 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 6 820 1330 21 7 0 chr9 30859094 30859239 -93216933 - B1_Mm SINE Alu 0 147 2 6 820 561 248 35 49 chr9 30859549 30859693 -93216479 - B1F2 SINE Alu 0 149 8 6 820 230 350 45 116 chr9 30859556 30859711 -93216461 - B4A SINE B4 -72 220 77 6 820 204 354 39 8 chr9 30860078 30860206 -93215966 + MIR SINE MIR 126 257 -5 6 820 1660 42 16 0 chr9 30860240 30860430 -93215742 - B2_Mm1a SINE B2 0 193 1 6 820 500 315 8 0 chr9 30860510 30860640 -93215532 - B1F SINE Alu 0 149 19 6 820 315 0 0 0 chr9 30862015 30862050 -93214122 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 820 405 162 0 14 chr9 30862064 30862133 -93214039 - PB1D9 SINE Alu -52 68 1 6 820 283 143 20 0 chr9 30862201 30862250 -93213922 - B2_Mm2 SINE B2 -99 96 47 6 820 1427 62 11 11 chr9 30862282 30862461 -93213711 - B2_Mm1t SINE B2 -14 179 1 6 820 968 83 0 76 chr9 30862477 30862513 -93213659 - B1_Mm SINE Alu -2 145 117 6 820 306 0 0 0 chr9 30862513 30862547 -93213625 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 820 1062 53 83 8 chr9 30862547 30862675 -93213497 - B1_Mus2 SINE Alu -4 143 5 6 820 968 83 0 76 chr9 30862675 30862799 -93213373 - B1_Mm SINE Alu -31 116 1 6 820 1447 66 22 6 chr9 30862933 30863116 -93213056 + B2_Mm2 SINE B2 2 187 -8 6 820 371 160 0 13 chr9 30863117 30863193 -93212979 + GA-rich Low_complexity Low_complexity 4 78 0 6 820 423 214 35 35 chr9 30863196 30863283 -93212889 - PB1D7 SINE Alu -13 107 21 6 820 313 224 210 20 chr9 30863327 30863427 -93212745 + ID_B1 SINE B4 91 209 -15 6 820 237 286 243 12 chr9 30864369 30864542 -93211630 - MER90 LTR ERV1 -330 245 33 6 820 225 132 0 0 chr9 30865344 30865382 -93210790 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 6 820 214 183 50 0 chr9 30865384 30865444 -93210728 + T-rich Low_complexity Low_complexity 5 67 0 6 820 218 122 0 24 chr9 30865393 30865435 -93210737 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 6 820 588 89 21 43 chr9 30865468 30865562 -93210610 - B1_Mur4 SINE Alu -8 142 51 6 820 963 114 94 6 chr9 30865770 30865929 -93210243 - B2_Mm2 SINE B2 -21 174 2 6 820 620 239 0 14 chr9 30866413 30866553 -93209619 + ID_B1 SINE B4 82 219 -5 6 820 477 318 125 55 chr9 30866813 30867069 -93209103 + B4A SINE B4 1 274 -18 6 820 643 247 101 0 chr9 30867757 30867820 -93208352 + ID SINE ID 9 87 -137 6 820 359 291 90 9 chr9 30867820 30867931 -93208241 + PB1D7 SINE Alu 1 120 0 6 820 238 246 18 0 chr9 30867930 30867987 -93208185 - ID_B1 SINE B4 -75 149 92 6 820 310 206 127 0 chr9 30868371 30868434 -93207738 - ID4 SINE ID -11 72 2 6 820 533 182 0 11 chr9 30868753 30868842 -93207330 - B3 SINE B2 -121 95 8 6 820 189 107 0 0 chr9 30868922 30868950 -93207222 + (T)n Simple_repeat Simple_repeat 1 28 0 6 820 1224 62 14 0 chr9 30868950 30869095 -93207077 - B1_Mm SINE Alu 0 147 1 6 820 1065 122 14 0 chr9 30869321 30869464 -93206708 + B1_Mur4 SINE Alu 1 145 -5 6 820 261 0 0 0 chr9 30869464 30869493 -93206679 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 820 223 342 173 29 chr9 30869974 30870217 -93205955 + L2a LINE L2 2590 2860 -559 6 820 758 141 141 0 chr9 30870217 30870345 -93205827 + B1_Mus1 SINE Alu 2 147 -1 6 820 223 342 173 29 chr9 30870345 30870447 -93205725 + L2a LINE L2 2861 2985 -434 6 820 727 234 71 43 chr9 30870467 30870677 -93205495 - B3 SINE B2 0 216 1 6 820 210 294 29 0 chr9 30870688 30870756 -93205416 + L2a LINE L2 3112 3181 -245 6 820 274 247 11 105 chr9 30872030 30872046 -93204126 + MT2B LTR ERVL 155 161 -440 6 820 388 282 47 28 chr9 30872046 30872152 -93204020 + PB1D9 SINE Alu 2 109 -11 6 820 225 97 65 0 chr9 30872571 30872633 -93203539 + T-rich Low_complexity Low_complexity 3 68 0 6 820 1086 256 84 59 chr9 30873056 30873413 -93202759 - MTE2a LTR MaLR -13 366 1 6 820 234 308 26 0 chr9 30873518 30873596 -93202576 + ID4 SINE ID 4 83 0 6 820 861 245 191 25 chr9 30873613 30873968 -93202204 - MTD LTR MaLR -5 374 1 6 820 487 162 288 0 chr9 30874978 30875089 -93201083 + B1_Mus2 SINE Alu 3 145 -2 6 820 24 0 0 0 chr9 30876670 30876694 -93199478 + AT_rich Low_complexity Low_complexity 1 24 0 6 820 189 0 0 0 chr9 30877037 30877058 -93199114 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 6 820 252 0 0 0 chr9 30877912 30877940 -93198232 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 820 370 257 49 107 chr9 30877955 30878077 -93198095 - PB1D10 SINE Alu 0 117 3 6 820 21 71 0 0 chr9 30878141 30878183 -93197989 + AT_rich Low_complexity Low_complexity 1 42 0 6 820 182 111 0 62 chr9 30878212 30878260 -93197912 + T-rich Low_complexity Low_complexity 1 45 0 6 820 1293 48 0 0 chr9 30878260 30878407 -93197765 - B1_Mus2 SINE Alu 0 147 1 6 820 245 350 12 0 chr9 30878434 30878514 -93197658 - ID4_ SINE ID 0 83 3 6 820 250 43 87 0 chr9 30878720 30878766 -93197406 + (TTTTG)n Simple_repeat Simple_repeat 4 53 0 6 820 31 0 0 0 chr9 30882120 30882151 -93194021 + AT_rich Low_complexity Low_complexity 1 31 0 6 820 234 0 0 0 chr9 30883015 30883041 -93193131 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 820 1083 93 6 24 chr9 30884173 30884339 -93191833 - B2_Mm2 SINE B2 -32 163 1 6 820 216 0 0 0 chr9 30884709 30884733 -93191439 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 820 232 163 186 0 chr9 30886203 30886246 -93189926 + ID_B1 SINE B4 174 224 0 6 820 291 54 0 0 chr9 30886649 30886686 -93189486 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 820 229 333 13 0 chr9 30887641 30887719 -93188453 + LTR41 LTR ERVL 217 295 -473 6 820 410 274 10 10 chr9 30888310 30888413 -93187759 + PB1 SINE Alu 13 115 -12 6 820 212 247 312 0 chr9 30888793 30888870 -93187302 + RSINE1 SINE B4 15 115 -50 6 820 261 0 0 0 chr9 30888892 30888921 -93187251 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 820 993 44 0 62 chr9 30888921 30889067 -93187105 - B1_Mus1 SINE Alu -11 137 1 6 820 1239 242 68 62 chr9 30889079 30889496 -93186676 + Lx6 LINE L1 6527 7319 -141 6 820 362 261 50 67 chr9 30889641 30889760 -93186412 - PB1D9 SINE Alu -2 118 2 6 820 227 54 27 0 chr9 30892515 30892552 -93183620 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 6 820 1262 32 0 0 chr9 30892553 30892710 -93183462 - B2_Mm2 SINE B2 -37 158 2 7 820 228 195 130 0 chr9 30893462 30893539 -93182633 + PB1D10 SINE Alu 31 117 0 7 820 1139 62 0 0 chr9 30894626 30894770 -93181402 - B1_Mus1 SINE Alu -3 145 2 7 820 312 287 200 18 chr9 30894943 30895053 -93181119 - MER45A DNA Tip100 -19 159 30 7 820 423 0 0 0 chr9 30895947 30895994 -93180178 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 820 369 0 0 0 chr9 30897619 30897660 -93178512 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 7 820 203 321 18 18 chr9 30897773 30897884 -93178288 + (CCCTG)n Simple_repeat Simple_repeat 4 114 0 7 820 246 278 0 106 chr9 30897833 30897974 -93178198 + C-rich Low_complexity Low_complexity 6 131 0 7 820 501 277 38 8 chr9 30899366 30899497 -93176675 - B3A SINE B2 -62 136 2 7 820 5265 137 45 13 chr9 30899745 30900673 -93175499 + RMER17B LTR ERVK 1 958 0 7 820 183 161 0 0 chr9 30901123 30901154 -93175018 - L2b LINE L2 -29 3346 3316 7 820 228 293 122 0 chr9 30901334 30901416 -93174756 + MIRb SINE MIR 61 152 -116 7 820 1162 91 34 11 chr9 30901435 30901612 -93174560 + B2_Mm2 SINE B2 2 182 -13 7 820 316 102 0 22 chr9 30901658 30901755 -93174417 + B2_Mm2 SINE B2 47 177 -18 7 820 23 54 0 0 chr9 30902603 30902640 -93173532 + AT_rich Low_complexity Low_complexity 1 37 0 7 820 217 192 0 55 chr9 30902649 30902670 -93173502 + A-rich Low_complexity Low_complexity 1 20 0 7 820 1214 34 0 0 chr9 30902670 30902816 -93173356 + B1_Mus1 SINE Alu 2 147 -1 7 820 217 192 0 55 chr9 30902816 30902849 -93173323 + A-rich Low_complexity Low_complexity 21 52 0 7 820 704 197 8 0 chr9 30902899 30903026 -93173146 + B1_Mur4 SINE Alu 9 136 -14 7 820 252 354 42 24 chr9 30903889 30904054 -93172118 - MER91A DNA Tip100 -28 168 1 7 820 706 209 143 0 chr9 30905831 30906012 -93170160 - B3 SINE B2 0 216 10 7 820 2593 163 41 6 chr9 30906012 30906505 -93169667 + RLTR28 LTR ERVL 1 510 -14 7 820 254 285 141 83 chr9 30906890 30907166 -93169006 - B4A SINE B4 0 292 1 7 820 766 279 61 33 chr9 30908283 30908646 -93167526 - L1MA6 LINE L1 -63 6237 5865 7 820 7308 79 18 16 chr9 30908707 30909749 -93166423 + L1_Mus4 LINE L1 5591 6634 -2 7 820 476 317 127 0 chr9 30909749 30909954 -93166218 - Tigger7 DNA MER2_type -2068 423 193 7 820 376 226 60 0 chr9 30909971 30910055 -93166117 - Tigger7 DNA MER2_type -2390 101 13 7 820 919 166 60 17 chr9 30910726 30910918 -93165254 + B3 SINE B2 1 194 -1 7 820 682 128 115 43 chr9 30910928 30911050 -93165122 + B1_Mur2 SINE Alu 1 138 -11 7 820 441 0 0 0 chr9 30911050 30911099 -93165073 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 820 682 128 115 43 chr9 30911099 30911115 -93165057 + B1_Mur2 SINE Alu 139 149 0 7 820 262 264 135 45 chr9 30911625 30911736 -93164436 - B1F SINE Alu -6 121 1 7 820 855 234 207 6 chr9 30912027 30912341 -93163831 + MTE2b LTR MaLR 3 379 0 7 820 323 96 0 19 chr9 30912385 30912438 -93163734 + (TTA)n Simple_repeat Simple_repeat 1 52 0 7 820 375 224 178 17 chr9 30912466 30912584 -93163588 - B1F SINE Alu -12 137 1 7 820 455 279 152 96 chr9 30912851 30913313 -93162859 + MER74A LTR ERVL 81 587 -35 7 820 180 0 0 0 chr9 30914461 30914481 -93161691 + (G)n Simple_repeat Simple_repeat 1 20 0 7 820 621 40 0 0 chr9 30914532 30914608 -93161564 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 820 508 261 0 0 chr9 30915005 30915124 -93161048 + PB1 SINE Alu 1 119 -8 7 820 586 283 7 0 chr9 30916554 30916706 -93159466 + ID_B1 SINE B4 69 221 -3 7 820 288 0 0 0 chr9 30917063 30917095 -93159077 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 820 234 62 0 0 chr9 30917095 30917126 -93159046 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 7 820 576 272 0 8 chr9 30917127 30917253 -93158919 - RSINE1 SINE B4 -36 129 5 7 820 956 329 65 31 chr9 30917256 30917839 -93158333 - Lx8 LINE L1 -7 7466 6864 7 820 427 295 0 44 chr9 30917969 30918104 -93158068 - B1_Mur2 SINE Alu -7 142 14 7 820 2361 140 92 2 chr9 30918109 30918488 -93157684 + RLTR16 LTR ERVK 6 421 -84 7 820 424 0 0 35 chr9 30918488 30918546 -93157626 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 820 2361 140 92 2 chr9 30918546 30918625 -93157547 + RLTR16 LTR ERVK 422 504 -1 7 820 1129 94 5 0 chr9 30918643 30918816 -93157356 - B2_Mm2 SINE B2 -7 186 7 7 820 581 280 57 0 chr9 30918849 30919006 -93157166 - B3A SINE B2 -18 180 15 7 820 588 222 19 71 chr9 30919110 30919265 -93156907 + B1F SINE Alu 1 147 -2 7 820 189 147 0 0 chr9 30919318 30919352 -93156820 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 7 820 233 75 0 24 chr9 30919674 30919715 -93156457 + (TTG)n Simple_repeat Simple_repeat 3 42 0 7 820 484 200 27 18 chr9 30919729 30919841 -93156331 - B1F SINE Alu -25 124 12 7 820 351 0 0 0 chr9 30919923 30919962 -93156210 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 820 547 14 28 0 chr9 30919962 30920033 -93156139 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 820 642 238 0 0 chr9 30920033 30920159 -93156013 + B1_Mus1 SINE Alu 23 148 0 7 820 331 169 12 12 chr9 30920177 30920261 -93155911 - HAL1 LINE L1 -874 1633 1550 7 820 416 284 289 39 chr9 30920369 30920750 -93155422 - HAL1 LINE L1 -1139 1368 803 7 820 1179 163 10 0 chr9 30921428 30921636 -93154536 + MTD LTR MaLR 1 210 -209 7 820 1112 67 13 0 chr9 30921636 30921785 -93154387 + B2_Mm2 SINE B2 2 152 -43 7 820 420 37 0 0 chr9 30921786 30921840 -93154332 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 7 820 558 0 0 0 chr9 30921859 30921921 -93154251 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 7 820 470 259 73 16 chr9 30921921 30922111 -93154061 + MTD LTR MaLR 185 419 0 7 820 487 306 126 28 chr9 30922111 30922743 -93153429 - L1M2 LINE L1 -692 5487 4760 7 820 587 238 20 7 chr9 30922745 30922893 -93153279 + RSINE1 SINE B4 3 152 -13 7 820 708 314 97 14 chr9 30922982 30923396 -93152776 + L1M5 LINE L1 4303 4750 -1396 7 820 1158 28 0 7 chr9 30923575 30923717 -93152455 + B1_Mus1 SINE Alu 2 142 -6 7 820 201 176 0 0 chr9 30923721 30923755 -93152417 + A-rich Low_complexity Low_complexity 1 34 0 7 820 239 268 0 35 chr9 30923814 30923899 -93152273 + ID2 SINE ID 1 82 -1 7 820 584 246 61 0 chr9 30924010 30924161 -93152011 + B3A SINE B2 1 181 -12 7 820 285 211 0 17 chr9 30924158 30924216 -93151956 + B4A SINE B4 222 278 -14 7 820 345 320 0 8 chr9 30924698 30924824 -93151348 - MIR3 SINE MIR -41 167 43 7 820 234 0 0 0 chr9 30925531 30925557 -93150615 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 820 1017 64 50 0 chr9 30925557 30925697 -93150475 - B2_Mm2 SINE B2 -14 181 35 7 820 193 301 105 9 chr9 30928521 30928635 -93147537 + MIRb SINE MIR 40 164 -104 7 820 662 196 38 0 chr9 30929458 30929591 -93146581 - B1_Mur2 SINE Alu -10 139 2 7 820 260 313 60 75 chr9 30929597 30929863 -93146309 - L1MD1 LINE L1 -212 6030 5769 7 820 432 0 0 0 chr9 30930306 30930354 -93145818 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 820 414 0 0 0 chr9 30930412 30930458 -93145714 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 820 417 277 88 36 chr9 30930866 30931080 -93145092 - MER2 DNA MER2_type -15 330 104 7 820 2295 242 44 8 chr9 30931235 30931759 -93144413 + Lx5 LINE L1 6507 7049 -1 7 820 651 234 29 0 chr9 30931808 30931945 -93144227 + RSINE1 SINE B4 4 144 -21 7 820 352 207 77 108 chr9 30932024 30932154 -93144018 + B3A SINE B2 70 195 -3 7 820 1229 104 0 25 chr9 30932252 30932450 -93143722 - B2_Mm2 SINE B2 -2 193 1 7 820 360 0 0 0 chr9 30932454 30932494 -93143678 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 7 820 405 143 169 0 chr9 30932534 30932611 -93143561 - B2_Mm2 SINE B2 -104 91 2 7 820 670 145 17 8 chr9 30932643 30932761 -93143411 + B1_Mur2 SINE Alu 30 148 -1 7 820 210 91 61 0 chr9 30932772 30932805 -93143367 + GA-rich Low_complexity Low_complexity 3 37 0 7 102 881 233 30 0 chr9 30932871 30933073 -93143099 + B3 SINE B2 3 210 -6 7 821 388 338 55 123 chr9 30933229 30933539 -93142633 - B4 SINE B4 -2 290 2 7 821 227 322 101 38 chr9 30934296 30934454 -93141718 - L3 LINE CR1 -1167 3322 3155 7 821 291 336 74 1 chr9 30934493 30934620 -93141552 + MIRb SINE MIR 6 146 -122 7 821 909 57 0 0 chr9 30934937 30935060 -93141112 + B1_Mur3 SINE Alu 2 124 -25 7 821 21 36 0 0 chr9 30935152 30935180 -93140992 + AT_rich Low_complexity Low_complexity 1 28 0 7 821 267 268 15 0 chr9 30935221 30935312 -93140860 + MER2 DNA MER2_type 157 249 -96 7 821 263 261 182 0 chr9 30936844 30936932 -93139240 + MIRm SINE MIR 173 276 0 7 821 261 0 0 0 chr9 30937632 30937661 -93138511 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 821 423 282 34 8 chr9 30940055 30940173 -93135999 - RSINE1 SINE B4 -43 122 2 7 821 224 243 14 28 chr9 30941123 30941195 -93134977 + PB1D10 SINE Alu 47 117 0 7 821 198 0 0 0 chr9 30941341 30941363 -93134809 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 821 180 338 75 0 chr9 30942385 30942465 -93133707 + L4 LINE RTE 58 143 -1886 7 821 480 99 0 0 chr9 30943581 30943652 -93132520 + (TGAG)n Simple_repeat Simple_repeat 2 72 0 7 821 455 167 101 30 chr9 30943652 30943751 -93132421 - PB1D9 SINE Alu -13 107 2 7 821 805 133 0 107 chr9 30943944 30944112 -93132060 - B1_Mur4 SINE Alu 0 150 1 7 821 691 258 0 48 chr9 30944323 30944490 -93131682 - RSINE1 SINE B4 -4 161 3 7 821 264 91 0 0 chr9 30944539 30944583 -93131589 + (T)n Simple_repeat Simple_repeat 1 44 0 8 821 674 144 7 22 chr9 30945126 30945261 -93130911 - B1_Mus2 SINE Alu -1 146 14 8 821 255 260 25 25 chr9 30945391 30945470 -93130702 - ID4 SINE ID 0 83 5 8 821 590 147 21 0 chr9 30945819 30945914 -93130258 - B1_Mur4 SINE Alu -13 137 41 8 821 307 164 0 0 chr9 30945964 30946019 -93130153 - B1_Mur4 SINE Alu -90 60 6 8 821 1303 110 0 10 chr9 30946382 30946575 -93129597 - B2_Mm2 SINE B2 -2 193 3 8 821 849 80 32 0 chr9 30946624 30946749 -93129423 + B2_Mm2 SINE B2 2 130 -65 8 821 2523 292 130 20 chr9 30946754 30947809 -93128363 - Lx8 LINE L1 -31 7442 6272 8 821 585 141 104 32 chr9 30947819 30947944 -93128228 - B1_Mur1 SINE Alu -7 142 9 8 821 477 262 104 24 chr9 30947961 30948172 -93128000 - Lx8 LINE L1 -1208 6265 6038 8 821 1099 63 7 27 chr9 30948246 30948393 -93127779 - B1_Mus1 SINE Alu -3 145 2 8 821 438 158 74 0 chr9 30948998 30949093 -93127079 + URR1B DNA MER1_type 124 225 0 8 821 920 26 0 0 chr9 30949464 30949581 -93126591 + B1_Mus1 SINE Alu 1 117 -31 8 821 221 0 35 0 chr9 30949582 30949611 -93126561 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 821 906 215 40 25 chr9 30949617 30949817 -93126355 - B3 SINE B2 -13 203 1 8 821 356 0 23 0 chr9 30949832 30949876 -93126296 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 8 821 1027 62 48 0 chr9 30949877 30950023 -93126149 - B2_Mm2 SINE B2 -41 154 2 8 821 630 260 71 11 chr9 30950041 30950224 -93125948 + Tigger7 DNA MER2_type 1 194 -2297 8 821 297 51 0 0 chr9 30950232 30950271 -93125901 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 821 977 32 0 0 chr9 30950275 30950401 -93125771 - B1_Mus1 SINE Alu -21 127 2 8 821 269 236 0 8 chr9 30950294 30950418 -93125754 - ORR1B1-int LTR MaLR -755 754 632 8 821 804 269 47 0 chr9 30950419 30950631 -93125541 - ID_B1 SINE B4 -1 223 2 8 821 421 276 0 9 chr9 30950641 30950747 -93125425 + Tigger7 DNA MER2_type 203 307 -2184 8 821 248 288 25 0 chr9 30950766 30950846 -93125326 + Tigger7 DNA MER2_type 2171 2252 -239 8 821 406 216 18 64 chr9 30951352 30951461 -93124711 + B1_Mur2 SINE Alu 5 108 -41 8 821 470 148 12 0 chr9 30951634 30951715 -93124457 - B1_Mur1 SINE Alu -12 137 56 8 821 351 0 0 0 chr9 30951732 30951771 -93124401 + (TA)n Simple_repeat Simple_repeat 2 40 0 8 821 552 173 265 25 chr9 30951854 30952050 -93124122 - ORR1D1 LTR MaLR -3 371 129 8 821 289 333 0 20 chr9 30952096 30952197 -93123975 - B2_Mm2 SINE B2 -92 103 5 8 821 207 0 0 0 chr9 30952207 30952230 -93123942 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 8 821 649 227 96 16 chr9 30952258 30952446 -93123726 - ID_B1 SINE B4 0 224 22 8 821 612 286 19 68 chr9 30952486 30952635 -93123537 + ORR1E LTR MaLR 1 141 -218 8 821 575 195 62 0 chr9 30952635 30952748 -93123424 - PB1D9 SINE Alu 0 120 1 8 821 612 269 14 43 chr9 30952748 30952907 -93123265 + ORR1E LTR MaLR 142 370 0 8 821 270 296 45 27 chr9 30952999 30953110 -93123062 + Charlie7 DNA MER1_type 2206 2318 -294 8 821 2482 89 3 6 chr9 30953616 30953944 -93122228 + ORR1A2 LTR MaLR 1 327 0 8 821 22 56 0 0 chr9 30953965 30954001 -93122171 + AT_rich Low_complexity Low_complexity 1 36 0 8 821 281 196 145 8 chr9 30954249 30954330 -93121842 + B1F SINE Alu 9 95 -54 8 821 261 0 0 0 chr9 30954333 30954362 -93121810 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 821 431 304 115 65 chr9 30954562 30954759 -93121413 + B4A SINE B4 1 208 -84 8 821 349 266 179 13 chr9 30954759 30954915 -93121257 + B3A SINE B2 2 183 -15 8 821 431 304 115 65 chr9 30954915 30954995 -93121177 + B4A SINE B4 209 292 0 8 821 323 257 121 5 chr9 30955038 30955156 -93121016 - B1F SINE Alu -11 138 12 8 821 232 325 61 45 chr9 30955156 30955170 -93121002 - ID_B1 SINE B4 -11 213 80 8 821 186 43 0 0 chr9 30957315 30957338 -93118834 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 821 1410 93 5 0 chr9 30958935 30959128 -93117044 - B2_Mm2 SINE B2 0 195 2 8 821 329 313 111 7 chr9 30960253 30960388 -93115784 + RSINE1 SINE B4 1 149 -16 8 821 297 75 0 0 chr9 30960399 30960439 -93115733 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 821 1106 53 11 34 chr9 30960451 30960628 -93115544 + (CA)n Simple_repeat Simple_repeat 2 174 0 8 821 629 196 170 16 chr9 30966404 30966586 -93109586 + B3 SINE B2 1 210 -6 8 821 917 193 67 34 chr9 30967600 30967809 -93108363 - B3 SINE B2 0 216 1 8 821 212 213 64 0 chr9 30969232 30969279 -93106893 - B1F2 SINE Alu -66 83 34 8 821 1546 38 38 0 chr9 30970028 30970213 -93105959 + B2_Mm2 SINE B2 4 195 0 8 821 606 263 53 5 chr9 30971395 30971601 -93104571 - ID_B1 SINE B4 -8 216 1 8 821 242 315 0 0 chr9 30972036 30972090 -93104082 + ID4_ SINE ID 26 79 -4 8 821 225 0 0 0 chr9 30972512 30972537 -93103635 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 8 821 1406 54 53 16 chr9 30973113 30973300 -93102872 + B2_Mm2 SINE B2 2 195 0 8 821 237 213 0 0 chr9 30976405 30976452 -93099720 + CT-rich Low_complexity Low_complexity 2 48 0 8 821 869 238 16 0 chr9 30976699 30976888 -93099284 + B3 SINE B2 24 215 -1 8 821 234 91 0 0 chr9 30976889 30976922 -93099250 + (GAA)n Simple_repeat Simple_repeat 1 33 0 8 821 572 234 116 11 chr9 30977058 30977248 -93098924 + MTD LTR MaLR 3 212 -207 8 821 375 230 28 44 chr9 30977247 30977429 -93098743 + RMER17C LTR ERVK 97 275 -135 8 821 564 56 0 0 chr9 30977434 30977506 -93098666 + (GGGGA)n Simple_repeat Simple_repeat 4 75 0 8 821 526 133 307 0 chr9 30977515 30977665 -93098507 + MTD LTR MaLR 223 418 -1 8 821 383 274 14 69 chr9 30977797 30977942 -93098230 + ID_B1 SINE B4 80 216 -8 8 821 626 231 22 7 chr9 30977814 30977949 -93098223 + B1_Mur1 SINE Alu 12 148 -1 8 821 222 174 0 0 chr9 30978039 30978085 -93098087 + CT-rich Low_complexity Low_complexity 2 47 0 8 821 555 298 50 22 chr9 30979066 30979248 -93096924 - B3A SINE B2 -11 187 1 8 821 487 275 0 24 chr9 30979281 30979404 -93096768 + B1F1 SINE Alu 3 122 -27 8 821 534 295 41 18 chr9 30980186 30980355 -93095817 - B3A SINE B2 -7 191 19 8 821 1351 57 0 0 chr9 30980875 30981050 -93095122 + L1Md_A LINE L1 6408 6582 0 8 821 206 160 0 20 chr9 30981050 30981092 -93095080 + GA-rich Low_complexity Low_complexity 9 50 0 8 821 279 93 0 0 chr9 30981093 30981136 -93095036 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 821 293 284 59 96 chr9 30981311 30981360 -93094812 + B4 SINE B4 41 82 -210 8 821 734 169 14 7 chr9 30981360 30981503 -93094669 + B1_Mus2 SINE Alu 3 146 -1 8 821 1887 146 43 9 chr9 30981679 30982003 -93094169 + ORR1C1 LTR MaLR 1 335 -43 8 821 417 127 0 0 chr9 30982003 30982066 -93094106 + B1_Mus1 SINE Alu 1 63 -85 8 821 400 281 63 21 chr9 30982453 30982595 -93093577 + RSINE1 SINE B4 1 148 -17 8 821 451 217 78 28 chr9 30983292 30983434 -93092738 + B1_Mur2 SINE Alu 1 149 0 8 821 529 232 10 0 chr9 30985840 30985939 -93090233 + RSINE1 SINE B4 6 105 -60 8 821 4250 48 22 7 chr9 30985990 30986581 -93089591 + MTA_Mm-int LTR MaLR 499 1098 0 8 821 3366 21 8 10 chr9 30986581 30986974 -93089198 + MTA_Mm LTR MaLR 1 392 -4 8 821 1429 74 32 0 chr9 30986974 30987163 -93089009 + B2_Mm2 SINE B2 1 195 0 8 821 236 350 107 29 chr9 30987992 30988095 -93088077 + PB1 SINE Alu 15 125 -2 8 821 401 281 121 20 chr9 30988294 30988443 -93087729 - Tigger7 DNA MER2_type 0 2491 2328 8 821 727 232 30 6 chr9 30988458 30988623 -93087549 + B3 SINE B2 48 216 0 8 821 355 153 294 0 chr9 30990270 30990355 -93085817 + B1_Mus1 SINE Alu 3 112 -36 8 821 22 35 0 0 chr9 30990369 30990398 -93085774 + AT_rich Low_complexity Low_complexity 1 29 0 8 821 474 288 8 0 chr9 30991135 30991253 -93084919 + PB1 SINE Alu 1 119 -8 8 821 276 277 128 28 chr9 30991472 30991613 -93084559 + MTEb LTR MaLR 107 261 -118 8 821 968 122 70 27 chr9 30991631 30991816 -93084356 - B2_Mm2 SINE B2 -1 194 2 8 821 305 257 88 0 chr9 30991827 30991940 -93084232 + MTEb LTR MaLR 250 372 -7 8 821 887 166 147 20 chr9 30991969 30992166 -93084006 - URR1A DNA MER1_type 0 226 5 8 821 499 219 101 18 chr9 30992299 30992484 -93083688 + B3A SINE B2 1 186 -9 8 821 396 340 71 0 chr9 30992533 30992674 -93083498 - RSINE1 SINE B4 -3 162 12 8 821 1030 65 0 67 chr9 30993152 30993296 -93082876 + B1_Mm SINE Alu 1 134 -13 8 821 951 78 0 0 chr9 30993296 30993425 -93082747 + (GAAA)n Simple_repeat Simple_repeat 3 131 0 8 821 849 253 22 14 chr9 30993639 30993841 -93082331 + B3 SINE B2 6 194 -1 8 821 1223 41 0 0 chr9 30993859 30994005 -93082167 + B1_Mus1 SINE Alu 1 146 -2 8 821 180 0 0 0 chr9 30995298 30995318 -93080854 + (A)n Simple_repeat Simple_repeat 1 20 0 8 821 490 303 128 44 chr9 30995396 30995645 -93080527 + B4 SINE B4 2 271 -21 8 821 352 261 43 35 chr9 30995853 30995968 -93080204 + MIRb SINE MIR 129 244 -24 8 821 21 0 0 0 chr9 30996124 30996145 -93080027 + AT_rich Low_complexity Low_complexity 1 21 0 8 821 460 250 97 39 chr9 30996374 30996528 -93079644 + RSINE1 SINE B4 1 163 -2 8 821 186 143 0 0 chr9 30996530 30996565 -93079607 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 821 754 227 30 20 chr9 30997651 30997849 -93078323 - B3 SINE B2 0 216 17 8 821 364 288 112 0 chr9 30998374 30998499 -93077673 + RSINE1 SINE B4 3 141 -24 8 821 23 0 0 0 chr9 30998504 30998527 -93077645 + AT_rich Low_complexity Low_complexity 1 23 0 8 821 24 67 0 0 chr9 30998751 30998796 -93077376 + AT_rich Low_complexity Low_complexity 1 45 0 8 821 250 278 145 73 chr9 30999824 30999948 -93076224 + B3A SINE B2 22 154 -44 8 821 249 33 0 0 chr9 30999970 31000000 -93076172 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 821 23 0 0 0 chr9 31000312 31000335 -93075837 + AT_rich Low_complexity Low_complexity 1 23 0 1 821 482 254 90 23 chr9 31000374 31000507 -93075665 - RSINE1 SINE B4 -21 144 3 2 821 721 226 25 0 chr9 31000643 31000802 -93075370 - B3 SINE B2 -52 164 2 3 821 857 223 48 29 chr9 31000822 31001030 -93075142 - B3 SINE B2 -3 213 2 4 821 2002 137 118 17 chr9 31001057 31001406 -93074766 - ORR1C2 LTR MaLR 0 384 1 5 821 247 167 18 36 chr9 31002059 31002115 -93074057 - B2_Mm2 SINE B2 -94 101 47 6 821 248 197 30 0 chr9 31002117 31002183 -93073989 + (CACTC)n Simple_repeat Simple_repeat 1 68 0 7 821 1208 116 35 0 chr9 31002210 31002382 -93073790 - B2_Mm1t SINE B2 -14 179 2 8 821 335 267 0 7 chr9 31002635 31002716 -93073456 + ID4_ SINE ID 11 88 -64 9 821 978 269 38 85 chr9 31003108 31003506 -93072666 - MTD LTR MaLR 0 419 41 1 821 207 0 0 0 chr9 31003540 31003563 -93072609 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 821 870 309 108 0 chr9 31003707 31003976 -93072196 + Tigger7 DNA MER2_type 10 307 -2184 1 821 254 269 170 0 chr9 31004147 31004288 -93071884 + Tigger7 DNA MER2_type 2227 2391 -100 1 821 237 235 0 0 chr9 31004297 31004348 -93071824 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 1 821 288 0 0 0 chr9 31004349 31004381 -93071791 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 821 242 299 15 0 chr9 31004958 31005025 -93071147 + ID4_ SINE ID 2 69 -14 1 821 1258 27 7 0 chr9 31005207 31005353 -93070819 - B1_Mus1 SINE Alu 0 148 2 1 821 331 206 211 18 chr9 31005362 31005471 -93070701 + L1MB1 LINE L1 4855 4984 -1162 1 821 375 233 164 37 chr9 31005550 31005684 -93070488 + B4A SINE B4 62 215 -77 1 821 367 255 176 22 chr9 31005751 31006024 -93070148 + L1MB1 LINE L1 4979 5293 -853 1 821 532 248 31 6 chr9 31006052 31006214 -93069958 + L1MB1 LINE L1 5523 5688 -501 1 821 342 291 82 39 chr9 31006436 31006668 -93069504 + L1MB1 LINE L1 5881 6122 -46 1 821 746 223 125 18 chr9 31006672 31006896 -93069276 + B4 SINE B4 2 249 -43 1 821 915 133 35 14 chr9 31007178 31007323 -93068849 + B1_Mur4 SINE Alu 2 149 -1 2 821 338 235 36 173 chr9 31007522 31007661 -93068511 + L1MEg LINE L1 1015 1134 -4950 2 821 316 238 77 29 chr9 31007698 31007802 -93068370 + ID_B1 SINE B4 116 224 0 2 821 21 36 0 0 chr9 31008017 31008045 -93068127 + AT_rich Low_complexity Low_complexity 1 28 0 2 821 357 250 163 22 chr9 31008053 31008188 -93067984 - RSINE1 SINE B4 0 165 12 2 821 613 176 72 0 chr9 31008449 31008574 -93067598 + B1_Mus1 SINE Alu 15 148 0 2 821 658 296 31 26 chr9 31008756 31008950 -93067222 + B4 SINE B4 98 292 0 2 821 620 249 70 12 chr9 31009115 31009286 -93066886 + B3A SINE B2 18 198 0 2 821 24 53 0 0 chr9 31009300 31009338 -93066834 + AT_rich Low_complexity Low_complexity 1 38 0 2 821 775 173 201 0 chr9 31009475 31009654 -93066518 + B3 SINE B2 1 215 -1 2 821 603 248 37 43 chr9 31009976 31010140 -93066032 + B3 SINE B2 2 164 -52 3 821 887 144 133 36 chr9 31010246 31010441 -93065731 + B3 SINE B2 3 216 0 3 821 710 153 285 12 chr9 31010450 31010615 -93065557 + B3 SINE B2 1 210 -6 3 821 298 235 29 0 chr9 31010655 31010723 -93065449 + ID4_ SINE ID 14 83 0 3 821 334 276 179 25 chr9 31010775 31011054 -93065118 + L1ME3B LINE L1 5728 6049 -191 3 821 283 365 14 0 chr9 31011156 31011304 -93064868 + ID_B1 SINE B4 4 153 -71 3 821 292 136 0 63 chr9 31011338 31011401 -93064771 + PB1D9 SINE Alu 42 100 -20 3 821 236 167 61 20 chr9 31011430 31011479 -93064693 + RSINE1 SINE B4 57 107 -58 3 821 321 327 28 18 chr9 31011812 31011921 -93064251 - ID_B1 SINE B4 -36 188 79 3 821 317 267 13 0 chr9 31011913 31011988 -93064184 - PB1D10 SINE Alu -41 76 1 3 821 213 304 0 68 chr9 31011928 31012002 -93064170 - B4 SINE B4 -147 145 77 4 821 596 263 115 36 chr9 31012308 31012560 -93063612 + B4A SINE B4 21 292 0 4 821 885 176 66 6 chr9 31013239 31013422 -93062750 + B2_Mm2 SINE B2 2 195 0 4 821 603 210 150 22 chr9 31014014 31014194 -93061978 + B3 SINE B2 1 203 -13 4 821 457 149 39 78 chr9 31014345 31014447 -93061725 + B1_Mur1 SINE Alu 52 149 0 4 821 204 40 0 0 chr9 31015088 31015113 -93061059 + (TGGGGG)n Simple_repeat Simple_repeat 2 26 0 4 821 438 201 90 35 chr9 31016006 31016150 -93060022 - Charlie5 DNA MER1_type -157 2467 2316 4 821 867 125 81 0 chr9 31016185 31016321 -93059851 + B1_Mus1 SINE Alu 2 148 0 4 821 345 263 74 58 chr9 31016363 31016484 -93059688 + RSINE1 SINE B4 7 129 -36 4 821 366 282 63 73 chr9 31016541 31016732 -93059440 + B3A SINE B2 2 190 -8 4 821 279 0 0 0 chr9 31017198 31017229 -93058943 + (A)n Simple_repeat Simple_repeat 1 31 0 5 821 319 229 0 24 chr9 31020917 31021002 -93055170 + MLT1A LTR MaLR 78 160 -214 5 821 204 40 0 0 chr9 31021690 31021715 -93054457 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 5 821 527 62 15 9 chr9 31021815 31021908 -93054264 - B1_Mus1 SINE Alu -5 115 21 5 821 1367 77 22 0 chr9 31021928 31022109 -93054063 - B2_Mm2 SINE B2 -10 185 1 5 821 258 56 0 0 chr9 31022348 31022384 -93053788 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 821 291 250 12 62 chr9 31022648 31022729 -93053443 - PB1D10 SINE Alu -20 97 21 5 821 22 0 0 0 chr9 31022746 31022768 -93053404 + AT_rich Low_complexity Low_complexity 1 22 0 5 821 252 270 0 26 chr9 31023517 31023593 -93052579 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 5 821 22 0 0 0 chr9 31023703 31023725 -93052447 + AT_rich Low_complexity Low_complexity 1 22 0 5 821 873 166 60 39 chr9 31024200 31024382 -93051790 - B2_Mm2 SINE B2 -9 186 1 6 821 252 0 0 0 chr9 31024390 31024418 -93051754 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 821 324 0 0 0 chr9 31024678 31024714 -93051458 + (CTG)n Simple_repeat Simple_repeat 3 38 0 6 821 339 209 0 0 chr9 31025332 31025399 -93050773 + U4 snRNA snRNA 1 67 -78 6 821 180 0 0 0 chr9 31025896 31025916 -93050256 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 6 821 210 71 0 0 chr9 31026234 31026262 -93049910 + (T)n Simple_repeat Simple_repeat 1 28 0 6 821 825 154 44 44 chr9 31026330 31026534 -93049638 + Lx2 LINE L1 6788 6991 -6 6 821 244 333 87 9 chr9 31026728 31026843 -93049329 + PB1 SINE Alu 1 124 -3 6 821 265 174 0 75 chr9 31026915 31026969 -93049203 + T-rich Low_complexity Low_complexity 37 88 0 6 821 198 0 0 0 chr9 31026969 31026991 -93049181 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 6 821 265 174 0 75 chr9 31026991 31027029 -93049143 + T-rich Low_complexity Low_complexity 3 36 0 7 821 216 0 0 0 chr9 31027029 31027053 -93049119 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 821 667 258 63 34 chr9 31027056 31027261 -93048911 - ID_B1 SINE B4 -13 211 1 7 821 810 120 0 0 chr9 31027513 31027638 -93048534 + (GAA)n Simple_repeat Simple_repeat 2 126 0 7 821 824 112 0 23 chr9 31028017 31028145 -93048027 - B1_Mur4 SINE Alu -16 134 10 7 821 657 96 0 0 chr9 31028186 31028280 -93047892 + (TC)n Simple_repeat Simple_repeat 2 95 0 7 821 2320 140 94 26 chr9 31028586 31029076 -93047096 - RMER15 LTR ERVL -46 529 7 7 821 529 262 35 7 chr9 31029730 31029872 -93046300 - B1F SINE Alu -1 148 3 7 821 305 274 129 79 chr9 31029886 31030064 -93046108 + L1ME4a LINE L1 5926 6112 -12 7 821 1059 166 108 10 chr9 31030500 31030695 -93045477 + B3 SINE B2 3 216 0 7 821 488 302 94 0 chr9 31030746 31030895 -93045277 - RSINE1 SINE B4 0 165 3 8 821 1339 146 34 5 chr9 31031536 31031742 -93044430 - B3 SINE B2 -2 214 3 8 821 923 165 6 0 chr9 31031767 31031943 -93044229 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 821 306 302 62 0 chr9 31032051 31032147 -93044025 + PB1D10 SINE Alu 1 102 -15 8 821 823 258 14 23 chr9 31032473 31032691 -93043481 - B3 SINE B2 0 216 1 8 821 394 259 116 39 chr9 31032740 31032921 -93043251 - B3A SINE B2 0 198 4 8 821 246 352 22 0 chr9 31032965 31033056 -93043116 - MIRb SINE MIR -140 128 36 8 821 940 266 103 18 chr9 31033090 31033430 -93042742 - MTD LTR MaLR 0 419 51 8 821 22 0 0 0 chr9 31033669 31033691 -93042481 + AT_rich Low_complexity Low_complexity 1 22 0 8 821 375 164 0 14 chr9 31033858 31033932 -93042240 + B3 SINE B2 58 130 -86 8 821 854 159 7 27 chr9 31034790 31034939 -93041233 - B1_Mus2 SINE Alu 0 147 2 9 821 1021 205 9 37 chr9 31035357 31035575 -93040597 - B3 SINE B2 0 216 5 9 821 207 0 0 0 chr9 31035620 31035643 -93040529 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 821 1173 56 7 0 chr9 31035649 31035793 -93040379 - B1_Mus2 SINE Alu -2 145 1 9 821 970 201 29 34 chr9 31035823 31036029 -93040143 - B3 SINE B2 -9 207 3 9 821 444 257 0 19 chr9 31036687 31036794 -93039378 + PB1D10 SINE Alu 5 109 -8 9 821 247 241 121 0 chr9 31036798 31036881 -93039291 + L1MC LINE L1 5824 5916 -1966 9 821 518 259 42 7 chr9 31036917 31037061 -93039111 + RSINE1 SINE B4 3 151 -14 9 821 1159 82 0 0 chr9 31037111 31037258 -93038914 - B1_Mm SINE Alu 0 147 1 9 821 415 45 14 56 chr9 31037944 31038015 -93038157 + B1_Mm SINE Alu 80 147 0 9 821 730 296 28 24 chr9 31038069 31038356 -93037816 + B4A SINE B4 2 289 -3 1 821 212 188 21 0 chr9 31038361 31038409 -93037763 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 821 200 42 0 0 chr9 31038721 31038745 -93037427 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 821 840 200 0 0 chr9 31038746 31038926 -93037246 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 821 294 185 0 0 chr9 31038914 31038995 -93037177 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 821 707 131 56 97 chr9 31039006 31039150 -93037022 + B1_Mur3 SINE Alu 1 138 -11 1 821 207 0 0 0 chr9 31039152 31039175 -93036997 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 821 388 217 28 201 chr9 31040860 31041039 -93035133 + PB1D9 SINE Alu 1 149 0 1 821 462 286 18 0 chr9 31041132 31041244 -93034928 + B1F1 SINE Alu 8 121 -28 1 821 345 331 59 0 chr9 31041258 31041394 -93034778 + RSINE1 SINE B4 8 151 -14 1 821 1192 85 11 0 chr9 31041436 31041613 -93034559 + B2_Mm1t SINE B2 1 179 -14 1 821 241 109 196 0 chr9 31041645 31041691 -93034481 + B2_Mm2 SINE B2 47 101 -94 1 821 775 102 0 0 chr9 31041789 31041916 -93034256 - Lx3_Mus LINE L1 0 7009 6883 1 821 22 35 0 0 chr9 31041916 31041945 -93034227 + AT_rich Low_complexity Low_complexity 1 29 0 1 821 501 272 0 0 chr9 31041946 31042060 -93034112 + PB1D10 SINE Alu 4 117 0 1 821 315 345 40 26 chr9 31042082 31042234 -93033938 - Tigger5 DNA MER2_type -2166 240 87 1 821 220 284 19 87 chr9 31042242 31042346 -93033826 + BC1_Mm scRNA scRNA 7 103 -49 1 821 798 257 129 28 chr9 31043308 31043556 -93032616 + B4A SINE B4 2 274 -18 1 821 652 149 74 0 chr9 31043599 31043720 -93032452 - B1_Mm SINE Alu -8 139 10 1 821 228 305 68 38 chr9 31044014 31044147 -93032025 - B1F2 SINE Alu -3 146 10 1 821 609 170 0 0 chr9 31044205 31044317 -93031855 + CT-rich Low_complexity Low_complexity 3 114 0 1 821 646 250 19 38 chr9 31044339 31044497 -93031675 + RSINE1 SINE B4 5 159 -6 1 821 615 144 16 8 chr9 31044512 31044638 -93031534 + GA-rich Low_complexity Low_complexity 3 129 0 1 821 832 95 47 81 chr9 31044639 31044788 -93031384 + B1_Mus1 SINE Alu 4 147 -1 1 821 245 306 14 0 chr9 31044872 31044944 -93031228 + ID4 SINE ID 1 73 -10 1 821 288 200 0 0 chr9 31044973 31045048 -93031124 + GA-rich Low_complexity Low_complexity 1 75 0 1 821 246 270 29 48 chr9 31045182 31045287 -93030885 + MT2B LTR ERVL 139 241 -360 1 821 514 168 68 86 chr9 31045214 31045331 -93030841 + PB1D9 SINE Alu 6 120 0 1 821 252 143 0 0 chr9 31045434 31045476 -93030696 + (A)n Simple_repeat Simple_repeat 1 42 0 1 821 281 68 23 0 chr9 31045475 31045519 -93030653 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 1 821 955 137 14 7 chr9 31045574 31045721 -93030451 + B1_Mus1 SINE Alu 1 148 0 1 821 225 154 0 0 chr9 31045725 31045764 -93030408 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 1 821 1166 62 0 32 chr9 31045770 31045955 -93030217 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 1 821 330 152 0 0 chr9 31045956 31046015 -93030157 + GA-rich Low_complexity Low_complexity 4 62 0 1 821 600 255 21 0 chr9 31046536 31046681 -93029491 + B1_Mur1 SINE Alu 2 149 0 1 821 268 311 14 0 chr9 31046737 31046811 -93029361 - ID4 SINE ID -8 75 1 1 821 635 259 148 74 chr9 31047000 31047271 -93028901 - B4A SINE B4 0 292 2 1 821 1182 160 0 64 chr9 31047304 31047524 -93028648 - B3 SINE B2 -9 207 2 1 821 2190 127 195 6 chr9 31047548 31047912 -93028260 - RLTR10C LTR ERVK -3 433 1 1 821 501 62 0 0 chr9 31048049 31048114 -93028058 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 821 282 125 0 0 chr9 31048477 31048525 -93027647 + (GGGA)n Simple_repeat Simple_repeat 2 49 0 1 821 252 261 31 0 chr9 31049239 31049304 -93026868 + MLT1A1 LTR MaLR 241 307 -101 1 821 673 226 123 26 chr9 31049435 31049630 -93026542 + B3 SINE B2 1 214 -2 1 821 221 196 0 18 chr9 31049722 31049779 -93026393 + GA-rich Low_complexity Low_complexity 4 59 0 1 821 363 136 0 0 chr9 31049890 31049949 -93026223 + (T)n Simple_repeat Simple_repeat 1 59 0 1 821 825 25 246 0 chr9 31049949 31050067 -93026105 - B1_Mm SINE Alu 0 147 1 1 821 410 314 89 0 chr9 31050104 31050228 -93025944 - RSINE1 SINE B4 -24 141 7 1 821 234 238 0 31 chr9 31050355 31050420 -93025752 - L1M4 LINE L1 -254 5930 5868 1 821 192 77 0 0 chr9 31050475 31050501 -93025671 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 821 655 165 6 6 chr9 31050501 31050544 -93025628 + polypurine Low_complexity Low_complexity 2 44 0 1 821 888 69 33 33 chr9 31050544 31050724 -93025448 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 1 821 655 165 6 6 chr9 31050724 31050857 -93025315 + GA-rich Low_complexity Low_complexity 45 178 0 1 821 22 0 0 0 chr9 31051989 31052011 -93024161 + AT_rich Low_complexity Low_complexity 1 22 0 1 821 436 172 293 0 chr9 31052118 31052217 -93023955 - B3 SINE B2 -87 129 2 1 821 429 259 25 150 chr9 31052222 31052422 -93023750 - ID_B1 SINE B4 -48 176 2 1 821 226 321 35 35 chr9 31052936 31053023 -93023149 + B4A SINE B4 81 167 -125 1 821 346 308 0 0 chr9 31052948 31053039 -93023133 + PB1D10 SINE Alu 5 95 -22 1 821 224 239 11 64 chr9 31053062 31053092 -93023080 + A-rich Low_complexity Low_complexity 2 32 0 1 821 816 164 15 0 chr9 31053092 31053226 -93022946 + B1_Mur4 SINE Alu 1 136 -14 1 821 224 239 11 64 chr9 31053226 31053289 -93022883 + A-rich Low_complexity Low_complexity 33 89 0 1 821 535 160 0 62 chr9 31053411 31053524 -93022648 - B1_Mur2 SINE Alu 0 149 44 1 821 1064 53 159 0 chr9 31053603 31053618 -93022554 - B2_Mm1a SINE B2 -17 176 161 1 821 279 0 0 0 chr9 31053618 31053649 -93022523 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 1 821 1064 53 159 0 chr9 31053649 31053784 -93022388 - B2_Mm1a SINE B2 -33 160 3 1 821 303 65 0 0 chr9 31053788 31053834 -93022338 - B1_Mur4 SINE Alu 0 150 105 1 821 411 21 0 0 chr9 31053916 31053964 -93022208 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 821 21 0 0 0 chr9 31054074 31054095 -93022077 + AT_rich Low_complexity Low_complexity 1 21 0 1 821 499 290 74 0 chr9 31054390 31054552 -93021620 + MTEb LTR MaLR 18 191 -188 1 821 740 76 30 15 chr9 31054605 31054739 -93021433 + (TATG)n Simple_repeat Simple_repeat 3 138 0 1 821 295 271 29 0 chr9 31055281 31055351 -93020821 - ID2 SINE ID -11 72 1 1 821 415 237 79 7 chr9 31055450 31055590 -93020582 + L1MA6 LINE L1 6118 6267 -33 1 821 329 216 68 0 chr9 31055643 31055717 -93020455 + B3A SINE B2 1 79 -119 1 821 269 217 71 24 chr9 31055717 31055728 -93020444 + B4A SINE B4 1 89 -203 1 821 330 129 0 0 chr9 31055781 31055843 -93020329 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 821 25 0 0 0 chr9 31055844 31055869 -93020303 + AT_rich Low_complexity Low_complexity 1 25 0 1 821 622 162 0 9 chr9 31056102 31056208 -93019964 + B1_Mur2 SINE Alu 1 105 -44 1 821 984 112 0 146 chr9 31056306 31056525 -93019647 - B2_Mm2 SINE B2 -8 187 1 1 821 401 321 80 0 chr9 31056563 31056700 -93019472 + B1F SINE Alu 1 148 -1 1 821 363 219 73 0 chr9 31056785 31056867 -93019305 + PB1D10 SINE Alu 1 88 -29 1 821 825 132 0 15 chr9 31056975 31057106 -93019066 + B1_Mus1 SINE Alu 2 130 -18 1 821 189 171 0 0 chr9 31057208 31057243 -93018929 + (ATG)n Simple_repeat Simple_repeat 1 35 0 1 821 611 230 0 9 chr9 31057244 31057358 -93018814 - PB1D9 SINE Alu -7 113 1 1 821 284 341 56 42 chr9 31057650 31057794 -93018378 + MER5A1 DNA MER1_type 18 163 -3 1 821 271 352 153 16 chr9 31057794 31057918 -93018254 + ID_B1 SINE B4 29 169 -55 1 821 226 293 26 139 chr9 31057848 31057963 -93018209 + PB1D7 SINE Alu 17 118 -2 1 821 1348 80 23 0 chr9 31057966 31058142 -93018030 + B2_Mm2 SINE B2 2 181 -14 1 821 326 83 267 193 chr9 31058157 31058265 -93017907 + B2_Mm2 SINE B2 51 170 -25 1 821 1141 101 0 0 chr9 31058265 31058413 -93017759 - B1_Mus1 SINE Alu 0 148 1 1 821 326 83 267 193 chr9 31058413 31058439 -93017733 + B2_Mm2 SINE B2 171 195 0 1 821 222 118 0 0 chr9 31058483 31058517 -93017655 + (A)n Simple_repeat Simple_repeat 1 34 0 1 821 926 131 15 0 chr9 31058552 31058689 -93017483 + B1_Mur4 SINE Alu 5 143 -7 1 821 200 206 0 0 chr9 31058690 31058724 -93017448 + polypurine Low_complexity Low_complexity 1 34 0 1 821 217 327 9 84 chr9 31058853 31058960 -93017212 + RSINE1 SINE B4 1 99 -66 1 821 24 32 0 0 chr9 31059386 31059417 -93016755 + AT_rich Low_complexity Low_complexity 1 31 0 1 821 1200 61 0 0 chr9 31059573 31059721 -93016451 + B1_Mus1 SINE Alu 1 148 0 1 821 419 190 12 47 chr9 31059846 31059953 -93016219 + PB1D7 SINE Alu 34 149 0 1 821 300 297 17 35 chr9 31060009 31060124 -93016048 - BC1_Mm scRNA scRNA -38 114 2 1 821 217 132 0 0 chr9 31060252 31060290 -93015882 + (T)n Simple_repeat Simple_repeat 1 38 0 1 821 621 183 243 45 chr9 31060779 31060956 -93015216 - B3 SINE B2 -4 212 1 1 821 666 156 90 0 chr9 31061251 31061373 -93014799 - B1_Mus1 SINE Alu -15 133 1 1 821 268 280 0 74 chr9 31061423 31061504 -93014668 - RSINE1 SINE B4 0 165 91 1 821 217 217 100 14 chr9 31061461 31061531 -93014641 - B3A SINE B2 -121 77 2 1 821 1173 142 18 70 chr9 31061561 31061789 -93014383 - B3 SINE B2 0 216 1 2 821 404 288 54 31 chr9 31062217 31062346 -93013826 + Tigger7 DNA MER2_type 371 502 -1989 2 821 523 267 13 13 chr9 31062575 31062727 -93013445 + MLT2C1 LTR ERVL 42 193 -204 2 821 744 317 59 0 chr9 31063248 31063519 -93012653 - LTR48B LTR ERV1 0 644 358 2 821 388 298 147 31 chr9 31063577 31063802 -93012370 - LTR48B LTR ERV1 -242 402 152 2 822 241 346 13 0 chr9 31064196 31064274 -93011898 + ID4_ SINE ID 1 79 -4 2 822 826 179 0 41 chr9 31064400 31064546 -93011626 + B1_Mur3 SINE Alu 4 143 -6 2 822 221 125 81 24 chr9 31064693 31064816 -93011356 + (TA)n Simple_repeat Simple_repeat 2 131 0 2 822 235 297 189 0 chr9 31064879 31064953 -93011219 + B3A SINE B2 86 173 -25 2 822 693 316 20 10 chr9 31065088 31065286 -93010886 + B4A SINE B4 7 206 -86 2 822 515 288 30 73 chr9 31065287 31065452 -93010720 + RSINE1 SINE B4 8 165 0 2 822 332 237 0 0 chr9 31065467 31065526 -93010646 + B4A SINE B4 216 274 -18 2 822 450 0 0 0 chr9 31065538 31065588 -93010584 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 822 900 251 6 11 chr9 31065589 31065770 -93010402 - B3A SINE B2 -18 180 1 2 822 574 341 77 24 chr9 31065931 31066349 -93009823 - L1ME1 LINE L1 -34 6145 5706 2 822 1246 34 7 0 chr9 31066369 31066515 -93009657 - B1_Mm SINE Alu 0 147 1 2 822 27 0 0 0 chr9 31066526 31066553 -93009619 + AT_rich Low_complexity Low_complexity 1 27 0 2 822 1105 180 24 5 chr9 31066561 31066624 -93009548 - B3 SINE B2 0 216 152 2 822 3613 20 0 0 chr9 31066624 31067020 -93009152 - MTA_Mm LTR MaLR 0 396 1 2 822 1105 180 24 5 chr9 31067020 31067168 -93009004 - B3 SINE B2 -65 151 3 2 822 559 221 39 8 chr9 31067175 31067303 -93008869 - ID_B1 SINE B4 -11 213 82 2 822 372 228 103 24 chr9 31067307 31067433 -93008739 - L1ME1 LINE L1 -465 5714 5579 2 822 421 318 68 34 chr9 31067435 31067596 -93008576 + B3A SINE B2 1 169 -29 2 822 207 0 0 0 chr9 31067596 31067619 -93008553 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 822 372 22 0 0 chr9 31067619 31067663 -93008509 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 822 421 318 68 34 chr9 31067663 31067676 -93008496 + B3A SINE B2 170 181 -17 2 822 908 134 249 12 chr9 31068676 31068849 -93007323 - B3 SINE B2 -2 214 1 2 822 240 281 115 15 chr9 31068916 31069046 -93007126 - L1M5 LINE L1 -388 5776 5634 2 822 369 195 169 22 chr9 31069263 31069352 -93006820 - PB1D10 SINE Alu -4 113 12 2 822 423 128 0 0 chr9 31069357 31069443 -93006729 + (TC)n Simple_repeat Simple_repeat 2 87 0 2 822 227 235 14 68 chr9 31069460 31069471 -93006701 - tRNA-Ala-GCG tRNA tRNA -4 71 3 2 822 252 250 16 32 chr9 31069471 31069533 -93006639 - ID4 SINE ID -14 69 9 2 822 839 122 0 14 chr9 31069649 31069790 -93006382 + (TTTC)n Simple_repeat Simple_repeat 3 141 0 2 822 211 338 76 25 chr9 31069830 31069909 -93006263 - ID_B1 SINE B4 -105 119 37 2 822 2695 152 50 6 chr9 31069909 31070411 -93005761 + RLTR28 LTR ERVL 1 524 0 2 822 2823 164 13 112 chr9 31070491 31071115 -93005057 - RMER15 LTR ERVL 0 575 14 2 822 461 284 18 0 chr9 31071182 31071291 -93004881 + ID_B1 SINE B4 60 170 -54 2 822 769 232 0 0 chr9 31071304 31071442 -93004730 + B3A SINE B2 1 138 -60 2 822 964 224 36 5 chr9 31071669 31071862 -93004310 + ID_B1 SINE B4 24 222 -2 2 822 734 124 0 8 chr9 31071862 31071984 -93004188 + (GGGA)n Simple_repeat Simple_repeat 1 121 0 2 822 764 176 0 8 chr9 31072207 31072339 -93003833 - B1_Mur2 SINE Alu -1 148 18 2 822 326 206 140 11 chr9 31072506 31072599 -93003573 - PB1D10 SINE Alu -8 109 5 2 822 1168 35 0 0 chr9 31072741 31072884 -93003288 + B1_Mus1 SINE Alu 6 148 0 2 822 290 204 0 0 chr9 31072954 31072998 -93003174 - ID4_ SINE ID -38 45 2 2 822 737 214 0 7 chr9 31073292 31073433 -93002739 - B1_Mur1 SINE Alu -7 142 3 2 822 239 281 56 37 chr9 31073647 31073754 -93002418 - MMSAT4 Satellite Satellite -27 141 33 2 822 367 168 381 31 chr9 31074306 31074466 -93001706 - B3 SINE B2 0 216 1 2 822 648 26 0 0 chr9 31074874 31074952 -93001220 + (CAAG)n Simple_repeat Simple_repeat 1 78 0 2 822 612 298 29 9 chr9 31074966 31075176 -93000996 - MER21B LTR ERV1 -139 724 511 2 822 754 269 139 18 chr9 31075247 31075470 -93000702 - MER21B LTR ERV1 -492 371 122 2 822 1379 304 113 78 chr9 31075903 31076723 -92999449 + MER21B LTR ERV1 1 849 -14 2 822 444 181 14 0 chr9 31076867 31076939 -92999233 + B4 SINE B4 2 74 -218 2 822 230 338 0 26 chr9 31076872 31076948 -92999224 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 2 822 917 179 91 11 chr9 31076977 31077152 -92999020 + B3 SINE B2 1 189 -27 2 822 238 306 0 0 chr9 31077190 31077239 -92998933 + RSINE1 SINE B4 11 59 -106 2 822 261 0 0 0 chr9 31077559 31077588 -92998584 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 822 621 297 34 0 chr9 31077601 31077749 -92998423 - RSINE1 SINE B4 -6 159 7 2 822 419 310 67 55 chr9 31077754 31077815 -92998357 + B4 SINE B4 29 91 -201 2 822 759 193 7 7 chr9 31077815 31077951 -92998221 + B1_Mur2 SINE Alu 3 138 -11 2 822 236 213 81 16 chr9 31077987 31078049 -92998123 - MLT1B LTR MaLR -33 357 292 2 822 306 246 16 0 chr9 31078255 31078316 -92997856 - ID SINE ID -162 62 1 2 822 552 234 73 85 chr9 31078388 31078492 -92997680 - L1MC4 LINE L1 -365 7677 7573 2 822 394 222 81 0 chr9 31078492 31078591 -92997581 - U13_ snRNA snRNA -1 107 1 2 822 552 234 73 85 chr9 31078591 31078734 -92997438 - L1MC4 LINE L1 -470 7572 7433 2 822 339 263 81 9 chr9 31078756 31078863 -92997309 - PB1 SINE Alu -15 134 29 2 822 313 232 60 12 chr9 31078888 31078971 -92997201 - L1MC4 LINE L1 -665 7377 7291 2 822 222 253 37 37 chr9 31078975 31079057 -92997115 + ID2 SINE ID 1 82 -1 2 822 284 322 0 33 chr9 31079168 31079258 -92996914 - PB1D7 SINE Alu -1 119 33 2 822 256 262 170 45 chr9 31079308 31079420 -92996752 - PB1 SINE Alu 0 127 2 2 822 219 200 67 0 chr9 31079538 31079583 -92996589 - ID SINE ID -150 74 27 2 822 200 200 18 0 chr9 31079659 31079714 -92996458 + CT-rich Low_complexity Low_complexity 1 56 0 2 822 249 355 71 0 chr9 31079970 31080111 -92996061 + L2a LINE L2 2024 2174 -1245 2 822 717 159 71 14 chr9 31080146 31080286 -92995886 + B1_Mur1 SINE Alu 1 148 -1 2 822 492 290 36 24 chr9 31080290 31080453 -92995719 - B3A SINE B2 -15 201 36 2 822 286 298 53 11 chr9 31080465 31080560 -92995612 - PB1 SINE Alu -7 120 22 2 822 429 241 46 78 chr9 31080603 31080719 -92995453 - PB1D10 SINE Alu -7 110 2 2 822 297 176 122 0 chr9 31080990 31081064 -92995108 + ID_B1 SINE B4 121 203 -21 2 822 1130 63 7 0 chr9 31081186 31081328 -92994844 + B1_Mus2 SINE Alu 5 147 0 2 822 219 36 0 0 chr9 31081341 31081369 -92994803 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 822 189 0 0 0 chr9 31081763 31081784 -92994388 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 2 822 215 315 25 83 chr9 31081954 31082075 -92994097 + L2a LINE L2 3313 3426 0 2 822 592 263 25 56 chr9 31082139 31082300 -92993872 - RSINE1 SINE B4 -8 157 2 2 822 1210 68 0 0 chr9 31082968 31083115 -92993057 + B1_Mus1 SINE Alu 2 148 0 2 822 28 0 0 0 chr9 31083115 31083143 -92993029 + AT_rich Low_complexity Low_complexity 1 28 0 2 822 186 43 0 0 chr9 31083143 31083166 -92993006 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 822 1330 208 25 38 chr9 31083184 31083549 -92992623 - RMER17C LTR ERVK -474 432 1 2 822 889 169 0 13 chr9 31083603 31083753 -92992419 - B1_Mur4 SINE Alu 0 150 3 2 822 733 333 69 79 chr9 31084051 31084341 -92991831 - B4 SINE B4 -1 291 5 2 822 706 209 28 21 chr9 31084343 31084485 -92991687 + B1_Mur1 SINE Alu 6 148 -1 2 822 234 0 0 0 chr9 31084797 31084823 -92991349 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 822 287 252 58 39 chr9 31084880 31084911 -92991261 + MT2B LTR ERVL 137 169 -432 2 822 339 238 26 22 chr9 31084911 31085009 -92991163 + B1F SINE Alu 4 141 -8 2 822 281 200 0 48 chr9 31084953 31085016 -92991156 + ID_B1 SINE B4 164 223 -1 2 822 751 203 7 14 chr9 31085161 31085306 -92990866 + B1_Mur4 SINE Alu 5 148 -2 2 822 699 289 1 26 chr9 31085324 31085537 -92990635 + B4A SINE B4 83 290 -2 2 822 1503 179 192 19 chr9 31085567 31085942 -92990230 - RMER10A LTR ERVL -2 440 1 2 822 224 329 23 34 chr9 31086755 31086843 -92989329 - B1_Mus2 SINE Alu -1 146 60 2 822 234 0 0 0 chr9 31087204 31087230 -92988942 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 822 386 243 228 0 chr9 31087260 31087396 -92988776 - ID_B1 SINE B4 -56 168 2 2 822 181 250 49 16 chr9 31087968 31088029 -92988143 - L3 LINE CR1 -747 3742 3680 2 822 544 211 110 22 chr9 31090331 31090467 -92985705 - B1_Mur1 SINE Alu -1 148 1 2 822 389 265 0 56 chr9 31090493 31090601 -92985571 + RSINE1 SINE B4 3 104 -61 2 822 404 154 272 11 chr9 31090645 31090737 -92985435 + B1_Mus1 SINE Alu 14 129 -19 2 822 723 293 70 67 chr9 31090747 31091032 -92985140 + B4A SINE B4 6 291 -1 2 822 1244 48 0 0 chr9 31091425 31091572 -92984600 + B1_Mus2 SINE Alu 1 147 0 2 822 247 194 26 118 chr9 31091602 31091678 -92984494 + ID4_ SINE ID 2 70 -13 2 822 487 228 44 0 chr9 31091941 31092055 -92984117 + RSINE1 SINE B4 2 120 -45 2 822 285 212 246 33 chr9 31092247 31092369 -92983803 + MER33 DNA MER1_type 167 314 -10 2 822 678 235 32 37 chr9 31092740 31092930 -92983242 - B3A SINE B2 -6 192 4 2 822 528 30 0 0 chr9 31092965 31093031 -92983141 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 822 778 284 0 0 chr9 31093074 31093252 -92982920 - Lx8 LINE L1 -517 6956 6779 3 822 1175 76 0 0 chr9 31093252 31093397 -92982775 + B1_Mus1 SINE Alu 4 148 0 3 822 1539 235 23 34 chr9 31093419 31093803 -92982369 - Lx8 LINE L1 -681 6792 6413 3 822 655 235 34 14 chr9 31093803 31093962 -92982210 - B3 SINE B2 -11 184 38 3 822 1457 69 27 0 chr9 31093969 31094157 -92982015 - B2_Mm2 SINE B2 -1 194 2 3 822 714 109 33 105 chr9 31094194 31094347 -92981825 - RMER1B Other Other -7 1059 918 3 822 1414 216 125 32 chr9 31094359 31094760 -92981412 - RMER1B Other Other -615 451 14 3 822 651 237 7 7 chr9 31094828 31094968 -92981204 + B1_Mur1 SINE Alu 2 141 -8 3 822 1060 103 0 0 chr9 31095059 31095195 -92980977 - B1_Mur3 SINE Alu -12 137 2 3 822 1123 83 7 0 chr9 31095221 31095366 -92980806 - B1_Mm SINE Alu -1 146 1 3 822 811 177 7 26 chr9 31095389 31095540 -92980632 - B1_Mus1 SINE Alu 0 148 1 3 822 275 259 86 0 chr9 31095929 31096010 -92980162 - ORR1E LTR MaLR -253 106 19 3 822 290 87 22 0 chr9 31096018 31096064 -92980108 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 3 822 1137 88 0 0 chr9 31096064 31096212 -92979960 - B1_Mus1 SINE Alu 0 148 1 3 822 773 170 7 54 chr9 31096217 31096366 -92979806 - B1_Mur1 SINE Alu -3 146 5 3 822 270 115 0 0 chr9 31096496 31096548 -92979624 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 822 273 283 88 0 chr9 31097075 31097188 -92978984 + L1M5 LINE L1 5322 5444 -796 3 822 620 222 114 123 chr9 31097391 31097602 -92978570 + B4 SINE B4 84 292 0 3 822 429 20 0 0 chr9 31097602 31097652 -92978520 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 822 573 105 0 0 chr9 31097762 31097848 -92978324 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 822 213 287 143 34 chr9 31098457 31098576 -92977596 - RSINE1 SINE B4 -28 137 6 3 822 1217 55 0 0 chr9 31098914 31099060 -92977112 + B1_Mus2 SINE Alu 2 147 0 3 822 234 0 0 0 chr9 31099060 31099086 -92977086 + (A)n Simple_repeat Simple_repeat 1 26 0 3 822 1241 41 0 7 chr9 31099159 31099308 -92976864 + B1_Mus1 SINE Alu 1 148 0 3 822 247 302 42 0 chr9 31099350 31099446 -92976726 + PB1D7 SINE Alu 1 100 -20 3 822 874 282 60 8 chr9 31099602 31099870 -92976302 - B4A SINE B4 -10 282 1 3 822 216 0 0 0 chr9 31099884 31099908 -92976264 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 3 822 405 235 12 0 chr9 31099923 31100004 -92976168 - ID4 SINE ID -1 82 1 3 822 189 132 0 0 chr9 31100904 31100942 -92975230 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 822 515 267 15 15 chr9 31100948 31101085 -92975087 - RSINE1 SINE B4 -1 164 28 3 822 288 0 0 0 chr9 31101116 31101148 -92975024 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 822 1100 196 15 5 chr9 31101622 31101827 -92974345 - B3 SINE B2 -9 207 1 3 822 337 290 117 49 chr9 31101943 31102106 -92974066 - B4A SINE B4 -118 174 1 3 822 585 219 8 8 chr9 31102244 31102352 -92973820 + PB1D7 SINE Alu 1 109 -11 3 822 202 56 56 0 chr9 31102352 31102388 -92973784 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 822 585 219 8 8 chr9 31102388 31102399 -92973773 + PB1D7 SINE Alu 110 120 0 3 822 1162 76 7 0 chr9 31102421 31102566 -92973606 + B1_Mus1 SINE Alu 2 147 -1 3 822 204 111 0 0 chr9 31102566 31102602 -92973570 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 822 207 0 0 0 chr9 31102606 31102629 -92973543 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 3 822 477 133 31 0 chr9 31102683 31102781 -92973391 + CT-rich Low_complexity Low_complexity 2 102 0 3 822 302 225 0 48 chr9 31102875 31102959 -92973213 - PB1D10 SINE Alu 0 117 38 3 822 239 203 102 0 chr9 31102906 31102965 -92973207 - 4.5SRNA scRNA scRNA -6 88 24 3 822 724 268 79 17 chr9 31102987 31103279 -92972893 - L1M4 LINE L1 -391 5793 5484 3 822 305 221 43 14 chr9 31103496 31103565 -92972607 - ID4 SINE ID -10 73 3 3 822 242 186 164 41 chr9 31103864 31103937 -92972235 - ID4_ SINE ID 0 83 2 3 822 267 313 28 66 chr9 31104730 31104752 -92971420 - B3A SINE B2 -92 106 88 3 822 684 165 126 0 chr9 31104752 31104879 -92971293 - B1_Mur1 SINE Alu -6 143 1 3 822 900 0 0 0 chr9 31104887 31104987 -92971185 + (TTCTC)n Simple_repeat Simple_repeat 1 100 0 3 822 382 247 0 0 chr9 31104988 31105061 -92971111 - ID4 SINE ID -6 77 5 3 822 514 228 251 43 chr9 31105521 31105732 -92970440 + B4A SINE B4 1 255 -37 3 822 317 218 124 22 chr9 31106132 31106221 -92969951 + ID_B1 SINE B4 111 208 -16 3 822 231 36 0 0 chr9 31106226 31106254 -92969918 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 822 493 239 9 35 chr9 31106285 31106398 -92969774 + PB1D10 SINE Alu 1 110 -7 3 822 616 264 75 50 chr9 31106561 31106840 -92969332 + B4A SINE B4 1 286 -6 3 822 1298 95 5 45 chr9 31106992 31107190 -92968982 - B2_Mm1a SINE B2 -3 190 1 3 822 265 245 0 0 chr9 31107216 31107265 -92968907 - ID_B1 SINE B4 -98 126 78 3 822 321 261 175 30 chr9 31107810 31107976 -92968196 - L1MB7 LINE L1 -122 6062 5873 3 822 967 75 98 0 chr9 31108000 31108133 -92968039 - B1_Mm SINE Alu 0 147 2 3 822 241 223 149 97 chr9 31108160 31108199 -92967973 - PB1D9 SINE Alu 0 120 89 3 822 189 0 0 0 chr9 31108199 31108220 -92967952 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 822 241 223 149 97 chr9 31108220 31108294 -92967878 - PB1D9 SINE Alu -32 88 1 3 822 477 261 113 9 chr9 31108507 31108676 -92967496 - B3A SINE B2 -4 212 32 3 822 279 79 0 0 chr9 31109329 31109367 -92966805 + (CAGG)n Simple_repeat Simple_repeat 1 38 0 3 822 658 235 141 21 chr9 31110138 31110329 -92965843 - B3 SINE B2 0 216 3 3 822 216 257 0 0 chr9 31110341 31110411 -92965761 + CT-rich Low_complexity Low_complexity 3 72 0 3 822 346 243 133 103 chr9 31110430 31110595 -92965577 - B3 SINE B2 0 216 29 3 822 1025 59 37 0 chr9 31110914 31111049 -92965123 + B1_Mus1 SINE Alu 1 140 -8 3 822 351 60 0 0 chr9 31111049 31111099 -92965073 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 3 822 843 163 0 7 chr9 31111217 31111353 -92964819 - B1_Mur3 SINE Alu -6 143 9 3 822 599 13 27 0 chr9 31111806 31111881 -92964291 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 3 822 849 118 0 0 chr9 31111881 31112016 -92964156 - B1_Mus2 SINE Alu -2 145 11 3 822 841 193 116 37 chr9 31112007 31112222 -92963950 - MTD LTR MaLR -187 232 1 3 822 530 246 141 112 chr9 31112756 31113104 -92963068 - ORR1E LTR MaLR 0 359 2 3 822 1149 41 13 27 chr9 31113851 31114000 -92962172 - B1_Mus2 SINE Alu 0 147 1 3 822 1066 171 23 32 chr9 31114164 31114382 -92961790 - B3 SINE B2 0 216 1 3 822 236 348 21 36 chr9 31114456 31114596 -92961576 - RSINE1 SINE B4 0 165 28 3 822 753 248 28 147 chr9 31114721 31114972 -92961200 - ID_B1 SINE B4 0 224 4 3 822 724 145 0 8 chr9 31115500 31115618 -92960554 + B1_Mus1 SINE Alu 32 148 0 3 822 342 0 0 0 chr9 31115621 31115659 -92960513 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 3 822 745 301 105 13 chr9 31115677 31116057 -92960115 - MER21B LTR ERV1 -145 718 304 3 822 269 308 158 0 chr9 31116237 31116370 -92959802 - MER21B LTR ERV1 -709 154 1 3 822 294 295 79 31 chr9 31117401 31117583 -92958589 - B4 SINE B4 -18 274 1 3 822 331 295 69 8 chr9 31117611 31117741 -92958431 + L1MC4a LINE L1 5762 5899 -1983 3 822 306 278 60 30 chr9 31118202 31118302 -92957870 + L1MC4a LINE L1 7432 7534 -508 3 822 220 278 0 18 chr9 31118698 31118753 -92957419 + PB1 SINE Alu 44 97 -30 3 822 698 145 47 24 chr9 31118776 31118903 -92957269 - B1_Mur4 SINE Alu -16 134 5 3 822 916 211 51 5 chr9 31119475 31119670 -92956502 + B3 SINE B2 2 205 -11 3 822 756 171 232 11 chr9 31119711 31119888 -92956284 - B3 SINE B2 0 216 1 3 822 728 123 81 8 chr9 31119908 31120031 -92956141 + B1_Mus1 SINE Alu 8 139 -9 3 822 1257 99 39 6 chr9 31120080 31120262 -92955910 + B2_Mm2 SINE B2 1 188 -7 3 822 615 164 113 50 chr9 31120493 31120634 -92955538 + B1_Mur4 SINE Alu 1 150 0 3 822 326 304 97 58 chr9 31121559 31121597 -92954575 - B4 SINE B4 -35 257 170 3 822 395 229 134 10 chr9 31121597 31121694 -92954478 - B1_Mur1 SINE Alu -6 143 35 3 822 326 304 97 58 chr9 31121694 31121731 -92954441 - B4 SINE B4 -35 169 79 3 822 407 179 36 0 chr9 31122064 31122148 -92954024 + B1_Mur2 SINE Alu 48 134 -15 3 822 441 0 0 0 chr9 31122148 31122197 -92953975 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 822 1660 46 0 5 chr9 31122297 31122493 -92953679 - B2_Mm2 SINE B2 0 195 1 3 822 435 144 16 40 chr9 31124691 31124795 -92951377 - B1_Mur4 SINE Alu -1 149 49 3 822 1010 96 91 48 chr9 31124840 31125026 -92951146 - B2_Mm2 SINE B2 -1 194 1 3 822 280 343 49 0 chr9 31126527 31126629 -92949543 + PB1D10 SINE Alu 6 112 -5 3 822 726 263 47 33 chr9 31127162 31127374 -92948798 - ID_B1 SINE B4 -2 222 8 3 822 1117 96 0 0 chr9 31127649 31127795 -92948377 - B1_Mus2 SINE Alu -1 146 1 3 822 258 32 0 0 chr9 31127879 31127910 -92948262 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 822 264 211 275 11 chr9 31128119 31128210 -92947962 - PB1D7 SINE Alu 0 120 6 3 822 405 0 0 0 chr9 31128659 31128704 -92947468 + (TCTG)n Simple_repeat Simple_repeat 1 45 0 3 822 238 214 35 18 chr9 31130138 31130195 -92945977 + PB1D10 SINE Alu 17 74 -43 4 822 563 250 28 0 chr9 31130208 31130352 -92945820 - B1_Mur3 SINE Alu -1 148 1 4 822 381 278 18 53 chr9 31130380 31130395 -92945777 + PB1D10 SINE Alu 2 16 -101 4 822 2139 79 28 107 chr9 31130395 31130750 -92945422 + ORR1A2 LTR MaLR 1 327 0 4 822 381 278 18 53 chr9 31130750 31130848 -92945324 + PB1D10 SINE Alu 17 111 -6 4 822 315 273 13 0 chr9 31131679 31131756 -92944416 + ID4 SINE ID 6 83 0 4 822 308 319 22 74 chr9 31131756 31131909 -92944263 + ID_B1 SINE B4 6 223 -1 4 822 799 260 31 22 chr9 31131912 31132136 -92944036 + B4 SINE B4 2 227 -65 4 822 726 250 35 6 chr9 31132138 31132307 -92943865 + B3A SINE B2 4 177 -21 4 822 1253 41 0 0 chr9 31132561 31132708 -92943464 + B1_Mus2 SINE Alu 1 147 0 4 822 276 38 75 0 chr9 31132712 31132765 -92943407 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 4 822 237 287 34 11 chr9 31132935 31133023 -92943149 - LTR52 LTR ERVL -321 100 11 4 822 228 213 0 0 chr9 31133290 31133351 -92942821 + GA-rich Low_complexity Low_complexity 2 62 0 4 822 266 293 17 33 chr9 31133503 31133623 -92942549 - MIRc SINE MIR -60 208 91 4 822 241 269 61 49 chr9 31135605 31135687 -92940485 + B4A SINE B4 83 165 -127 4 822 1011 87 22 0 chr9 31135736 31135874 -92940298 + B1_Mus2 SINE Alu 1 141 -6 4 822 477 148 0 0 chr9 31135897 31135978 -92940194 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 822 275 296 34 0 chr9 31136041 31136129 -92940043 - MLT1B LTR MaLR -41 349 259 4 822 287 312 31 16 chr9 31136158 31136285 -92939887 - MLT1B LTR MaLR -243 147 19 4 822 465 229 169 0 chr9 31136356 31136474 -92939698 - B1_Mur2 SINE Alu -5 144 7 4 822 561 239 0 0 chr9 31136544 31136661 -92939511 + ID_B1 SINE B4 103 219 -5 4 822 485 229 9 0 chr9 31136679 31136784 -92939388 + PB1D10 SINE Alu 7 112 -5 4 822 848 224 39 5 chr9 31136929 31137135 -92939037 + B3 SINE B2 2 214 -2 4 822 290 246 15 0 chr9 31137162 31137227 -92938945 + B3A SINE B2 2 67 -131 4 822 578 261 54 54 chr9 31137564 31137750 -92938422 - MER2 DNA MER2_type -27 318 133 4 822 25 31 0 0 chr9 31138074 31138106 -92938066 + AT_rich Low_complexity Low_complexity 1 32 0 4 822 210 320 101 20 chr9 31138309 31138408 -92937764 - B1F1 SINE Alu -42 107 1 4 822 288 225 21 43 chr9 31138653 31138746 -92937426 - ID_B1 SINE B4 -12 212 122 4 822 414 0 0 0 chr9 31138780 31138826 -92937346 + (TAA)n Simple_repeat Simple_repeat 1 46 0 4 822 365 270 22 87 chr9 31139015 31139153 -92937019 + ID_B1 SINE B4 3 131 -93 4 822 405 0 0 0 chr9 31139184 31139229 -92936943 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 822 452 301 20 40 chr9 31139605 31139757 -92936415 + RSINE1 SINE B4 1 149 -16 4 822 189 0 0 0 chr9 31139766 31139787 -92936385 + (CCA)n Simple_repeat Simple_repeat 1 21 0 4 822 665 197 35 7 chr9 31140145 31140288 -92935884 - B1F1 SINE Alu -1 148 2 4 822 230 250 232 45 chr9 31140414 31140569 -92935603 - Kanga1 DNA Tc2 -1054 691 508 4 822 865 164 145 16 chr9 31141465 31141651 -92934521 + B3 SINE B2 1 210 -6 4 822 505 250 86 0 chr9 31142034 31142150 -92934022 + PB1 SINE Alu 1 126 -1 4 822 276 232 0 0 chr9 31142237 31142293 -92933879 + ID_B1 SINE B4 152 207 -17 4 822 326 212 29 57 chr9 31143251 31143356 -92932816 - L1ME3A LINE L1 -1 6172 6071 4 822 429 333 31 69 chr9 31144058 31144319 -92931853 - MER21B LTR ERV1 -553 310 60 4 822 252 256 0 60 chr9 31144281 31144364 -92931808 - MER77 LTR ERVL -470 137 60 4 822 386 279 8 24 chr9 31144403 31144528 -92931644 - L1ME3A LINE L1 -478 5695 5573 4 822 1395 75 5 16 chr9 31145172 31145184 -92930988 - B2_Mm1a SINE B2 -4 189 179 4 822 726 12 0 0 chr9 31145184 31145267 -92930905 + (TTTC)n Simple_repeat Simple_repeat 4 86 0 4 822 1395 75 5 16 chr9 31145267 31145444 -92930728 - B2_Mm1a SINE B2 -15 178 2 4 822 237 98 0 0 chr9 31145533 31145574 -92930598 + (T)n Simple_repeat Simple_repeat 1 41 0 4 822 1164 55 7 14 chr9 31145575 31145722 -92930450 - B1_Mm SINE Alu -1 146 1 4 822 877 252 29 5 chr9 31145745 31145952 -92930220 - B3 SINE B2 -4 212 1 4 822 289 354 36 12 chr9 31146360 31146526 -92929646 - L2 LINE L2 -1971 1448 1279 4 822 218 276 80 16 chr9 31146727 31146852 -92929320 - L2 LINE L2 -2403 1016 884 4 822 189 171 0 0 chr9 31147200 31147235 -92928937 + CT-rich Low_complexity Low_complexity 2 36 0 4 822 785 220 141 5 chr9 31147241 31147433 -92928739 - ID_B1 SINE B4 -5 219 2 4 822 30 0 0 0 chr9 31148189 31148219 -92927953 + AT_rich Low_complexity Low_complexity 1 30 0 4 822 1254 41 0 0 chr9 31148219 31148366 -92927806 - B1_Mus2 SINE Alu 0 147 1 4 822 437 274 26 17 chr9 31148604 31148719 -92927453 + PB1 SINE Alu 1 116 -11 4 822 230 95 24 0 chr9 31149963 31150005 -92926167 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 822 1160 62 7 0 chr9 31152789 31152934 -92923238 + B1_Mus2 SINE Alu 2 147 0 4 822 1014 101 0 0 chr9 31153861 31154010 -92922162 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 4 822 628 179 0 35 chr9 31154027 31154143 -92922029 + PB1D9 SINE Alu 1 112 -8 4 822 23 0 0 0 chr9 31154830 31154853 -92921319 + AT_rich Low_complexity Low_complexity 1 23 0 4 822 675 197 80 0 chr9 31154971 31155108 -92921064 + RSINE1 SINE B4 5 152 -13 4 822 857 184 0 0 chr9 31155484 31155625 -92920547 + B1_Mur3 SINE Alu 2 142 -7 4 822 390 42 0 0 chr9 31155630 31155678 -92920494 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 822 227 211 68 40 chr9 31156193 31156267 -92919905 - ID4_ SINE ID 0 83 8 4 822 413 250 67 0 chr9 31157195 31157299 -92918873 + B1F SINE Alu 21 131 -18 4 822 482 288 21 7 chr9 31157401 31157541 -92918631 + RSINE1 SINE B4 3 144 -21 4 822 724 214 7 14 chr9 31157762 31157909 -92918263 + B1F SINE Alu 1 146 -3 4 822 319 121 30 15 chr9 31158118 31158185 -92917987 + CT-rich Low_complexity Low_complexity 4 71 0 4 822 309 264 78 12 chr9 31158227 31158332 -92917840 - B1F2 SINE Alu 0 117 9 4 822 372 175 20 10 chr9 31158342 31158440 -92917732 + CT-rich Low_complexity Low_complexity 2 100 0 4 822 298 269 28 37 chr9 31158549 31158657 -92917515 + CT-rich Low_complexity Low_complexity 4 110 0 4 822 325 253 52 21 chr9 31158657 31158754 -92917418 - ID_B1 SINE B4 -124 100 1 4 822 245 149 64 0 chr9 31158838 31158885 -92917287 - PB1D7 SINE Alu 0 120 71 4 822 420 301 29 0 chr9 31158847 31158983 -92917189 - ID_B1 SINE B4 -9 215 76 4 822 491 181 95 0 chr9 31159050 31159155 -92917017 + RSINE1 SINE B4 3 117 -48 4 822 210 325 76 45 chr9 31159155 31159182 -92916990 + B3A SINE B2 2 137 -61 4 822 5040 139 21 16 chr9 31159182 31160279 -92915893 - L1_Mur3 LINE L1 -4322 1558 460 4 822 1720 129 123 0 chr9 31160283 31160601 -92915571 - ORR1B2 LTR MaLR -8 359 3 4 822 782 181 81 12 chr9 31160605 31160778 -92915394 - L1_Mur3 LINE L1 -7268 460 276 4 822 214 244 0 0 chr9 31161277 31161322 -92914850 + (CTGGGG)n Simple_repeat Simple_repeat 5 49 0 4 822 402 320 90 0 chr9 31162302 31162458 -92913714 + B3A SINE B2 2 171 -27 4 822 183 222 0 0 chr9 31162493 31162538 -92913634 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 822 24 0 0 0 chr9 31162538 31162562 -92913610 + AT_rich Low_complexity Low_complexity 1 24 0 4 822 632 245 116 6 chr9 31162562 31162726 -92913446 + B3A SINE B2 1 182 -16 4 822 26 30 0 0 chr9 31162745 31162778 -92913394 + AT_rich Low_complexity Low_complexity 1 33 0 4 822 1373 83 11 0 chr9 31162778 31162958 -92913214 + B2_Mm2 SINE B2 1 182 -13 4 822 369 99 277 9 chr9 31162988 31163099 -92913073 + B2_Mm2 SINE B2 46 191 -4 4 822 885 160 0 7 chr9 31163113 31163258 -92912914 + B1_Mus1 SINE Alu 5 148 0 4 822 274 303 70 96 chr9 31163118 31163275 -92912897 + B4A SINE B4 94 246 -46 4 822 221 0 35 0 chr9 31163275 31163304 -92912868 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 4 822 1169 74 0 0 chr9 31163550 31163712 -92912460 - B2_Mm2 SINE B2 -31 164 3 4 822 1767 133 35 60 chr9 31163813 31164184 -92911988 - ORR1A4 LTR MaLR 0 378 1 4 822 646 121 198 41 chr9 31164346 31164467 -92911705 - B1_Mus2 SINE Alu -6 141 2 4 822 349 316 17 26 chr9 31165477 31165594 -92910578 - PB1 SINE Alu -11 116 1 4 822 197 0 71 0 chr9 31165595 31165623 -92910549 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 822 1292 72 32 16 chr9 31165664 31165849 -92910323 - B2_Mm2 SINE B2 -6 189 2 4 822 1850 167 30 11 chr9 31165902 31166265 -92909907 - RLTR16 LTR ERVK -135 370 1 4 822 577 206 111 56 chr9 31166265 31166469 -92909703 - ORR1B1 LTR MaLR -183 211 2 4 822 349 213 20 23 chr9 31166483 31166569 -92909603 - PB1D10 SINE Alu 0 127 32 4 822 1526 48 27 0 chr9 31166941 31167129 -92909043 - B2_Mm1a SINE B2 0 193 1 4 822 321 26 0 0 chr9 31167890 31167928 -92908244 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 822 768 175 28 14 chr9 31168090 31168235 -92907937 - B1_Mur1 SINE Alu -1 148 2 4 822 282 198 16 29 chr9 31168241 31168318 -92907854 - B1F1 SINE Alu -2 147 42 4 822 1151 69 7 0 chr9 31169682 31169827 -92906345 - B1_Mus2 SINE Alu 0 147 2 4 822 441 0 0 0 chr9 31170378 31170427 -92905745 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 4 822 222 176 0 0 chr9 31170445 31170479 -92905693 - ID4 SINE ID -9 74 41 4 822 1555 198 110 6 chr9 31170521 31170856 -92905316 - ORR1D1 LTR MaLR 0 374 5 5 822 760 280 68 4 chr9 31171270 31171535 -92904637 - RMER15 LTR ERVL -13 562 281 5 822 1254 231 73 75 chr9 31171656 31172082 -92904090 - RMER15-int LTR ERVL -6 4993 4569 5 822 801 239 16 16 chr9 31172086 31172277 -92903895 - RMER15-int LTR ERVL -587 4412 4222 5 822 2271 290 158 44 chr9 31172513 31173632 -92902540 - RMER15-int LTR ERVL -2835 2164 920 5 822 1254 113 27 5 chr9 31173632 31173819 -92902353 + B2_Mm2 SINE B2 3 193 -2 5 822 2271 316 99 43 chr9 31173819 31174683 -92901489 - RMER15-int LTR ERVL -4080 919 5 5 822 267 255 97 10 chr9 31174696 31174799 -92901373 - RMER15 LTR ERVL -14 561 450 5 822 364 264 0 98 chr9 31174789 31174911 -92901261 + B4A SINE B4 183 292 0 5 822 249 226 76 102 chr9 31175599 31175717 -92900455 + PB1D10 SINE Alu 2 116 -1 5 822 405 207 127 17 chr9 31175722 31175840 -92900332 + B1_Mur1 SINE Alu 17 147 -2 5 822 1657 31 0 10 chr9 31176408 31176603 -92899569 + B2_Mm1a SINE B2 1 193 0 5 822 1167 33 39 0 chr9 31176619 31176772 -92899400 + B2_Mm1t SINE B2 2 160 -33 5 822 207 0 0 0 chr9 31176772 31176795 -92899377 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 822 740 132 132 0 chr9 31176920 31177049 -92899123 + B1_Mus2 SINE Alu 2 147 0 5 822 428 150 12 0 chr9 31177072 31177152 -92899020 + GA-rich Low_complexity Low_complexity 2 82 0 5 822 231 327 34 86 chr9 31177287 31177332 -92898840 - ID_B1 SINE B4 -19 205 163 5 822 596 289 106 5 chr9 31177332 31177530 -92898642 + ID_B1 SINE B4 3 220 -4 5 822 1356 82 49 0 chr9 31177536 31177720 -92898452 + B2_Mm1a SINE B2 1 193 0 5 822 231 327 34 86 chr9 31177720 31177784 -92898388 - ID_B1 SINE B4 -62 162 95 5 822 550 284 22 93 chr9 31177983 31178112 -92898060 + Tigger5 DNA MER2_type 2198 2319 -87 5 822 686 216 50 0 chr9 31178112 31178251 -92897921 - B1_Mur3 SINE Alu -2 147 2 5 822 550 284 22 93 chr9 31178251 31178346 -92897826 + Tigger5 DNA MER2_type 2320 2406 0 5 822 192 77 0 0 chr9 31178887 31178913 -92897259 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 822 1099 211 69 0 chr9 31179603 31179892 -92896280 + Lx6 LINE L1 892 1200 -6528 5 822 1173 55 0 7 chr9 31179918 31180065 -92896107 + B1_Mus2 SINE Alu 2 147 0 5 822 216 0 0 0 chr9 31180065 31180089 -92896083 + (A)n Simple_repeat Simple_repeat 1 24 0 5 822 989 149 0 29 chr9 31180098 31180271 -92895901 + B2_Mm2 SINE B2 1 168 -27 5 822 564 215 30 56 chr9 31180289 31180325 -92895847 + Lx6 LINE L1 1153 1188 -5898 5 822 1458 67 5 30 chr9 31180325 31180524 -92895648 + B2_Mm2 SINE B2 2 195 0 5 822 8467 192 340 63 chr9 31180524 31180857 -92895315 + Lx6 LINE L1 1189 1611 -4269 5 822 1163 68 14 0 chr9 31180857 31181003 -92895169 + B1_Mus1 SINE Alu 1 148 0 5 822 8467 171 48 70 chr9 31181003 31181113 -92895059 + Lx6 LINE L1 1612 1667 -4213 5 822 749 76 244 0 chr9 31181113 31181232 -92894940 + B1_Mus1 SINE Alu 1 148 0 5 822 8467 171 48 70 chr9 31181232 31183005 -92893167 + Lx6 LINE L1 1668 3454 -2426 5 822 2989 158 193 54 chr9 31182994 31183226 -92892946 + Lx6 LINE L1 5020 5248 -632 5 822 1270 34 0 0 chr9 31183226 31183373 -92892799 + B1_Mus2 SINE Alu 1 147 0 5 822 2989 190 116 57 chr9 31183373 31184345 -92891827 + Lx6 LINE L1 5249 6368 -632 5 822 891 306 55 56 chr9 31184355 31184920 -92891252 + Lx6 LINE L1 6479 7430 -30 5 822 850 176 0 0 chr9 31184933 31185069 -92891103 + B1_Mus1 SINE Alu 5 140 -8 5 822 257 234 25 25 chr9 31185160 31185239 -92890933 - B3A SINE B2 -117 81 3 5 822 248 264 0 0 chr9 31185384 31185437 -92890735 - B4A SINE B4 -238 54 2 5 822 28 29 0 0 chr9 31185633 31185668 -92890504 + AT_rich Low_complexity Low_complexity 1 35 0 5 822 210 71 0 0 chr9 31186733 31186761 -92889411 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 822 406 282 0 0 chr9 31186768 31186871 -92889301 - PB1 SINE Alu -17 110 8 5 822 224 154 19 0 chr9 31187102 31187154 -92889018 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 822 339 25 0 0 chr9 31187160 31187200 -92888972 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 822 432 229 0 0 chr9 31187318 31187401 -92888771 - ID4 SINE ID 0 83 1 5 822 628 175 42 35 chr9 31188401 31188543 -92887629 + B1_Mm SINE Alu 1 143 -4 5 822 29 0 0 0 chr9 31189284 31189313 -92886859 + AT_rich Low_complexity Low_complexity 1 29 0 5 822 292 250 0 42 chr9 31189386 31189457 -92886715 + B1F SINE Alu 74 141 -8 5 822 384 77 0 0 chr9 31189680 31189732 -92886440 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 822 887 271 199 17 chr9 31189734 31190155 -92886017 + L1MCa LINE L1 303 800 -5708 5 822 248 154 0 0 chr9 31190160 31190199 -92885973 + ID4 SINE ID 2 40 -43 5 822 2713 144 52 48 chr9 31190199 31190520 -92885652 + RLTR28 LTR ERVL 1 326 -198 5 822 1399 104 10 0 chr9 31190520 31190713 -92885459 + B2_Mm2 SINE B2 1 195 0 5 822 2713 144 52 48 chr9 31190713 31190910 -92885262 + RLTR28 LTR ERVL 327 521 -3 5 822 207 100 0 0 chr9 31190978 31191008 -92885164 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 822 413 247 162 27 chr9 31191063 31191287 -92884885 + L1MCa LINE L1 5352 5604 -813 5 822 1535 37 0 41 chr9 31191619 31191778 -92884394 + B2_Mm1a SINE B2 2 160 -33 5 822 207 0 0 0 chr9 31191778 31191801 -92884371 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 822 1535 37 0 41 chr9 31191801 31191837 -92884335 + B2_Mm1a SINE B2 161 189 -4 5 822 1640 52 0 0 chr9 31191843 31192036 -92884136 + B2_Mm1t SINE B2 1 193 0 5 822 271 221 74 0 chr9 31192064 31192159 -92884013 + L1MC1 LINE L1 6231 6332 -1 5 822 783 55 0 9 chr9 31192278 31192387 -92883785 - B1_Mm SINE Alu 0 147 40 5 822 375 235 0 0 chr9 31192387 31192472 -92883700 + (CCTG)n Simple_repeat Simple_repeat 2 86 0 5 822 283 86 32 79 chr9 31192473 31192536 -92883636 - ID_B1 SINE B4 -79 145 86 5 822 317 74 0 69 chr9 31192482 31192540 -92883632 - B1_Mus2 SINE Alu -93 54 1 5 822 2444 136 95 84 chr9 31192949 31193487 -92882685 + RMER15 LTR ERVL 30 573 -2 5 822 204 125 0 0 chr9 31194459 31194491 -92881681 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 5 102 846 204 85 50 chr9 31195014 31195215 -92880957 + URR1B DNA MER1_type 18 225 0 5 823 396 59 0 0 chr9 31195707 31195758 -92880414 + (CGTG)n Simple_repeat Simple_repeat 3 53 0 5 823 317 250 101 11 chr9 31195782 31195871 -92880301 - RSINE1 SINE B4 -68 97 1 5 823 381 243 29 14 chr9 31195946 31196064 -92880108 - PB1D7 SINE Alu 0 120 1 5 823 543 239 27 55 chr9 31196264 31196410 -92879762 + B1F SINE Alu 8 149 0 5 823 228 214 0 0 chr9 31197130 31197172 -92879000 + C-rich Low_complexity Low_complexity 2 43 0 5 823 984 79 16 0 chr9 31197317 31197444 -92878728 + B1_Mus1 SINE Alu 1 129 -19 5 823 210 105 0 0 chr9 31197452 31197490 -92878682 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 5 823 3102 50 39 5 chr9 31197641 31198024 -92878148 - MTA_Mm LTR MaLR 0 396 1 5 823 247 276 75 0 chr9 31198209 31198316 -92877856 + AluG_3 SINE Alu 35 220 -91 5 823 1112 88 0 0 chr9 31198602 31198750 -92877422 - B1_Mus1 SINE Alu 0 148 1 5 823 599 197 17 8 chr9 31198857 31198975 -92877197 + B1_Mur3 SINE Alu 2 120 -29 5 823 460 176 32 21 chr9 31199219 31199312 -92876860 - PB1D10 SINE Alu 0 117 24 5 823 402 223 11 11 chr9 31199384 31199479 -92876693 + L1MB3 LINE L1 6066 6160 -23 5 823 316 289 80 0 chr9 31199976 31200082 -92876090 - B1F SINE Alu -1 119 6 5 823 213 189 0 0 chr9 31200200 31200237 -92875935 + CT-rich Low_complexity Low_complexity 2 38 0 5 823 1054 77 0 0 chr9 31200253 31200383 -92875789 - B1_Mus1 SINE Alu -18 130 1 5 823 1265 94 39 0 chr9 31200393 31200573 -92875599 - B2_Mm2 SINE B2 -8 187 1 5 823 282 319 55 30 chr9 31200784 31200949 -92875223 - L1MC4 LINE L1 -520 7522 7354 5 823 246 247 117 0 chr9 31200951 31201028 -92875144 - B1_Mur3 SINE Alu -63 86 1 5 823 1363 55 66 0 chr9 31201035 31201216 -92874956 - B2_Mm1t SINE B2 0 193 1 5 823 246 333 51 13 chr9 31201580 31201659 -92874513 - ID4_ SINE ID -1 82 1 5 823 231 170 21 0 chr9 31202565 31202612 -92873560 - Kanga1a DNA Tc2 -694 60 13 5 823 260 227 336 32 chr9 31202804 31202926 -92873246 - RSINE1 SINE B4 -4 161 3 5 823 1069 95 0 39 chr9 31203109 31203262 -92872910 + B1_Mus2 SINE Alu 1 147 0 5 823 189 0 0 0 chr9 31203262 31203283 -92872889 + (A)n Simple_repeat Simple_repeat 1 21 0 5 823 1180 89 0 0 chr9 31203285 31203453 -92872719 - B2_Mm2 SINE B2 -27 168 1 5 823 23 0 0 0 chr9 31206004 31206027 -92870145 + AT_rich Low_complexity Low_complexity 1 23 0 5 823 468 266 14 21 chr9 31206384 31206526 -92869646 + B4A SINE B4 1 141 -151 5 823 234 250 0 0 chr9 31206756 31206804 -92869368 + GA-rich Low_complexity Low_complexity 2 49 0 5 823 1041 63 31 0 chr9 31207165 31207390 -92868782 + (TG)n Simple_repeat Simple_repeat 1 232 0 5 823 795 171 355 3 chr9 31207710 31208009 -92868163 - MTD LTR MaLR -14 405 2 5 823 229 256 72 90 chr9 31209288 31209455 -92866717 + L2c LINE L2 3222 3385 -2 5 823 420 307 94 0 chr9 31211516 31211643 -92864529 + B1F1 SINE Alu 5 143 -6 5 823 822 146 15 15 chr9 31211760 31211892 -92864280 - B1_Mur3 SINE Alu -13 136 5 5 823 1241 101 22 0 chr9 31211927 31212105 -92864067 - B2_Mm2 SINE B2 -13 182 1 5 823 972 280 118 23 chr9 31212541 31212888 -92863284 - Lx8 LINE L1 -143 7330 6951 5 823 260 370 0 0 chr9 31213321 31213394 -92862778 - ID4_ SINE ID 0 83 11 5 823 246 0 21 83 chr9 31213415 31213463 -92862709 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 5 823 8253 57 0 2 chr9 31213463 31215118 -92861054 - L1Md_F2 LINE L1 -40 6542 4891 5 823 462 218 85 47 chr9 31215164 31215270 -92860902 + PB1D9 SINE Alu 1 110 -10 5 823 344 259 46 23 chr9 31215301 31215388 -92860784 + PB1D10 SINE Alu 2 90 -27 5 823 263 295 40 86 chr9 31215463 31215564 -92860608 + B4 SINE B4 137 232 -60 5 823 2511 135 14 29 chr9 31215564 31215977 -92860195 - MTB_Mm LTR MaLR 0 407 1 5 823 263 295 40 86 chr9 31215977 31216027 -92860145 + B4 SINE B4 233 281 -11 5 823 490 241 50 1 chr9 31216109 31216219 -92859953 + B3 SINE B2 3 121 -72 5 823 376 135 6 159 chr9 31216229 31216405 -92859767 - RMER17C LTR ERVK -139 271 123 5 823 845 202 31 12 chr9 31216428 31216638 -92859534 - B3A SINE B2 0 216 2 5 823 331 292 76 49 chr9 31217120 31217264 -92858908 - B1_Mur1 SINE Alu -1 148 1 6 823 218 200 112 45 chr9 31217269 31217358 -92858814 - PB1D10 SINE Alu 0 117 23 6 823 915 141 0 27 chr9 31219350 31219496 -92856676 + B1_Mus1 SINE Alu 5 146 -2 6 823 303 149 0 0 chr9 31220592 31220666 -92855506 + (T)n Simple_repeat Simple_repeat 1 74 0 6 823 216 97 0 0 chr9 31221031 31221062 -92855110 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 823 534 204 0 0 chr9 31221066 31221179 -92854993 + (TA)n Simple_repeat Simple_repeat 1 113 0 6 823 1722 142 149 29 chr9 31222434 31222810 -92853362 - MTC LTR MaLR 0 421 1 6 823 441 259 8 108 chr9 31222810 31222940 -92853232 - B1F SINE Alu -15 134 18 6 823 357 186 0 0 chr9 31223069 31223139 -92853033 + (CATA)n Simple_repeat Simple_repeat 1 70 0 6 823 371 336 14 41 chr9 31223140 31223155 -92853017 + ID_B1 SINE B4 73 214 -10 6 823 680 217 0 15 chr9 31223155 31223286 -92852886 + B1_Mus1 SINE Alu 10 138 -10 6 823 285 325 0 0 chr9 31223665 31223748 -92852424 + ID2 SINE ID 1 83 0 6 823 435 288 151 14 chr9 31225151 31225369 -92850803 + L1MC LINE L1 3540 3787 -2359 6 823 560 245 41 20 chr9 31225378 31225524 -92850648 + B3 SINE B2 68 216 0 6 823 1729 16 0 0 chr9 31225561 31225750 -92850422 - B2_Mm1t SINE B2 -3 190 2 6 823 234 362 103 56 chr9 31225874 31226108 -92850064 - ORR1E LTR MaLR -111 248 4 6 823 243 262 16 0 chr9 31226189 31226250 -92849922 + B1F SINE Alu 1 62 -87 6 823 435 95 0 0 chr9 31226257 31226331 -92849841 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 823 180 77 0 0 chr9 31226812 31226838 -92849334 + (G)n Simple_repeat Simple_repeat 1 26 0 6 823 410 255 22 100 chr9 31229213 31229444 -92846728 + ID_B1 SINE B4 1 213 -11 6 823 1974 203 36 96 chr9 31229499 31230022 -92846150 - RMER1C Other Other -1 1341 850 6 823 246 200 231 0 chr9 31230811 31230876 -92845296 - B3 SINE B2 -136 80 1 6 823 1404 81 0 21 chr9 31230972 31231161 -92845011 - B2_Mm2 SINE B2 -10 185 1 6 823 26 30 0 0 chr9 31231164 31231197 -92844975 + AT_rich Low_complexity Low_complexity 1 33 0 6 823 853 239 54 0 chr9 31231937 31232142 -92844030 - B3 SINE B2 0 216 1 6 823 452 210 71 16 chr9 31232161 31232287 -92843885 - B1_Mur2 SINE Alu 0 149 17 6 823 393 22 0 0 chr9 31232814 31232860 -92843312 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 6 823 6001 69 1 0 chr9 31232867 31233624 -92842548 - L1_Mus1 LINE L1 -2 6565 5808 6 823 1928 89 0 0 chr9 31233628 31233875 -92842297 + L1_Mus1 LINE L1 5510 5756 -127 6 823 223 219 78 0 chr9 31237259 31237323 -92838849 - PB1D10 SINE Alu 0 117 49 6 823 21 0 0 0 chr9 31237558 31237579 -92838593 + AT_rich Low_complexity Low_complexity 1 21 0 6 823 327 67 22 0 chr9 31238117 31238162 -92838010 + MERVL-int LTR ERVL 5315 5360 -125 6 823 344 179 46 35 chr9 31238162 31238249 -92837923 + ORR1A3-int LTR MaLR 553 640 -1323 6 823 233 246 30 76 chr9 31238244 31238284 -92837888 + ORR1A3-int LTR MaLR 580 613 -1350 6 823 3048 11 3 0 chr9 31238284 31238655 -92837517 + MT2_Mm LTR ERVL 1 372 -121 6 823 710 272 46 30 chr9 31239226 31239423 -92836749 - B4 SINE B4 -17 275 76 6 823 598 237 0 36 chr9 31239457 31239597 -92836575 + ID_B1 SINE B4 82 216 -8 6 823 3546 175 56 33 chr9 31239881 31240604 -92835568 - RMER1B Other Other -6 1060 177 6 823 290 326 101 13 chr9 31240640 31240789 -92835383 + RSINE1 SINE B4 2 163 -2 6 823 27 49 0 0 chr9 31240875 31240916 -92835256 + AT_rich Low_complexity Low_complexity 1 41 0 6 823 846 175 223 0 chr9 31240924 31241090 -92835082 - B3 SINE B2 -13 203 1 6 823 243 0 0 0 chr9 31242946 31242973 -92833199 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 823 1119 38 0 0 chr9 31242973 31243104 -92833068 - B1_Mus2 SINE Alu -13 134 4 6 823 407 258 109 47 chr9 31243255 31243513 -92832659 - L1M3c LINE L1 -4934 1207 933 6 823 458 61 0 15 chr9 31243513 31243580 -92832592 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 6 823 407 258 109 47 chr9 31243580 31243642 -92832530 - L1M3c LINE L1 -5209 932 867 6 823 225 175 0 0 chr9 31243679 31243719 -92832453 + CT-rich Low_complexity Low_complexity 2 41 0 6 823 233 226 0 0 chr9 31243878 31243931 -92832241 - B4A SINE B4 -72 220 168 6 823 324 329 103 5 chr9 31243933 31244156 -92832016 - L1M4b LINE L1 -4994 2108 1864 6 823 196 200 16 16 chr9 31244160 31244221 -92831951 + CT-rich Low_complexity Low_complexity 2 62 0 6 823 463 247 12 3 chr9 31244231 31244341 -92831831 - PB1D10 SINE Alu -9 108 1 6 823 347 297 79 25 chr9 31244341 31244621 -92831551 - L1M4b LINE L1 -5655 1679 1385 6 823 22 0 0 0 chr9 31245074 31245096 -92831076 + AT_rich Low_complexity Low_complexity 1 22 0 6 823 979 23 60 0 chr9 31245794 31246009 -92830163 + (GGA)n Simple_repeat Simple_repeat 1 228 0 6 823 25 31 0 0 chr9 31246329 31246361 -92829811 + AT_rich Low_complexity Low_complexity 1 32 0 6 823 946 168 81 5 chr9 31246848 31247058 -92829114 + ORR1D2-int LTR MaLR 1145 1370 0 6 823 1105 228 60 96 chr9 31247058 31247296 -92828876 + ORR1D2 LTR MaLR 1 222 -148 6 823 1200 55 0 0 chr9 31247296 31247442 -92828730 - B1_Mm SINE Alu 0 147 2 6 823 1105 228 60 96 chr9 31247442 31247587 -92828585 + ORR1D2 LTR MaLR 223 370 0 6 823 318 257 0 14 chr9 31247640 31247711 -92828461 - ID4_ SINE ID -12 71 2 6 823 740 311 53 15 chr9 31247755 31248019 -92828153 - MLT1B LTR MaLR 0 390 117 6 823 371 315 209 7 chr9 31248098 31248174 -92827998 - MLT-int LTR MaLR -22 1713 1623 6 823 1749 199 39 6 chr9 31248174 31248537 -92827635 + ORR1C1 LTR MaLR 1 375 -3 6 823 371 315 209 7 chr9 31248537 31248757 -92827415 - MLT-int LTR MaLR -113 1622 1358 6 823 2471 123 34 59 chr9 31249146 31249587 -92826585 + RLTR23 LTR ERV1 1 430 0 6 823 279 232 116 0 chr9 31249628 31249723 -92826449 + RMER10A LTR ERVL 318 423 -19 6 823 26 50 0 0 chr9 31251140 31251180 -92824992 + AT_rich Low_complexity Low_complexity 1 40 0 6 823 288 77 0 0 chr9 31251216 31251255 -92824917 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 823 1449 34 45 0 chr9 31251358 31251534 -92824638 - B2_Mm1a SINE B2 -8 185 2 6 823 495 0 0 0 chr9 31251570 31251625 -92824547 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 823 1245 319 66 27 chr9 31251639 31252276 -92823896 + Lx8 LINE L1 6585 7246 -227 6 823 256 227 0 113 chr9 31253038 31253162 -92823010 + Lx7 LINE L1 7311 7420 -276 6 823 268 268 109 0 chr9 31253199 31253337 -92822835 + Lx7 LINE L1 7531 7683 -13 6 823 216 86 0 0 chr9 31253957 31253992 -92822180 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 6 823 1153 62 7 7 chr9 31254000 31254147 -92822025 - B1_Mus1 SINE Alu 0 148 2 6 823 291 28 0 0 chr9 31254151 31254187 -92821985 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 823 604 228 36 7 chr9 31254187 31254324 -92821848 - B1_Mur2 SINE Alu -8 141 1 6 823 222 98 39 19 chr9 31254348 31254400 -92821772 + CT-rich Low_complexity Low_complexity 3 55 0 6 823 405 0 0 0 chr9 31254914 31254959 -92821213 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 6 823 342 182 78 29 chr9 31255166 31255268 -92820904 + Lx8 LINE L1 7358 7464 -9 6 823 751 152 112 0 chr9 31255302 31255427 -92820745 + B1_Mus2 SINE Alu 1 139 -8 6 823 22 0 0 0 chr9 31255433 31255455 -92820717 + AT_rich Low_complexity Low_complexity 1 22 0 6 823 502 253 127 35 chr9 31255699 31255982 -92820190 - L1M4 LINE L1 -620 5564 5256 6 823 295 204 0 0 chr9 31256035 31256089 -92820083 + CT-rich Low_complexity Low_complexity 1 54 0 6 823 285 98 16 32 chr9 31256089 31256137 -92820035 + (TTTTC)n Simple_repeat Simple_repeat 1 47 0 6 823 1135 68 0 0 chr9 31256137 31256284 -92819888 - B1_Mus2 SINE Alu 0 147 1 6 823 285 98 16 32 chr9 31256284 31256298 -92819874 + (TTTTC)n Simple_repeat Simple_repeat 2 15 0 6 823 676 194 34 20 chr9 31256299 31256446 -92819726 - B1_Mur4 SINE Alu -1 149 1 6 823 234 0 0 0 chr9 31256507 31256533 -92819639 + (TTA)n Simple_repeat Simple_repeat 2 27 0 6 823 460 182 134 18 chr9 31256533 31256645 -92819527 - B1_Mur2 SINE Alu -12 137 13 6 823 369 0 0 0 chr9 31256673 31256714 -92819458 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 823 387 297 115 35 chr9 31257622 31257961 -92818211 - MTEa LTR MaLR -13 366 1 6 823 414 0 0 0 chr9 31258721 31258767 -92817405 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 823 951 216 35 5 chr9 31258939 31259139 -92817033 - Lx5 LINE L1 -3 7047 6842 6 823 494 257 88 7 chr9 31259142 31259279 -92816893 - B1F2 SINE Alu 0 149 2 6 823 371 215 17 20 chr9 31259286 31259447 -92816725 - L1_Rod LINE L1 -841 5302 5125 6 823 197 320 73 73 chr9 31259477 31259642 -92816530 + L2c LINE L2 2311 2475 -944 6 823 287 368 44 7 chr9 31260072 31260209 -92815963 + L2c LINE L2 3049 3190 -197 6 823 234 273 78 8 chr9 31260372 31260501 -92815671 - Lx9 LINE L1 -17 7627 7490 6 823 835 121 37 22 chr9 31260674 31260809 -92815363 + B1_Mur4 SINE Alu 1 137 -13 6 823 351 0 0 0 chr9 31260814 31260853 -92815319 + (CTAA)n Simple_repeat Simple_repeat 3 41 0 6 823 1218 48 0 0 chr9 31261426 31261572 -92814600 - B1_Mm SINE Alu 0 147 2 6 823 293 179 125 25 chr9 31261639 31261719 -92814453 + PB1D10 SINE Alu 29 116 -1 6 823 1163 68 7 0 chr9 31261721 31261867 -92814305 + B1_Mus2 SINE Alu 1 147 0 6 823 488 243 148 70 chr9 31262468 31262698 -92813474 - RMER21B LTR ERV1 -275 567 320 6 823 1914 255 43 54 chr9 31262998 31263530 -92812642 + L1_Mur3 LINE L1 3612 4129 -1751 6 823 312 27 0 0 chr9 31263530 31263567 -92812605 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 823 1914 255 43 54 chr9 31263567 31263752 -92812420 + L1_Mur3 LINE L1 4130 4320 -1560 6 823 437 280 204 36 chr9 31263781 31264055 -92812117 + MMERGLN-int LTR ERV1 4103 4422 -3134 6 823 1343 311 56 35 chr9 31264516 31265287 -92810885 + MuRRS4-int LTR ERV1 3165 4036 -1027 6 823 558 269 22 16 chr9 31266009 31266193 -92809979 + RLTR6-int LTR ERV1 7328 7491 -287 6 823 1582 193 152 37 chr9 31266332 31266714 -92809458 + RLTR23 LTR ERV1 1 426 -4 7 823 498 250 38 101 chr9 31266723 31266932 -92809240 + L1M2 LINE L1 4750 4945 -1198 7 823 714 178 96 26 chr9 31266936 31267092 -92809080 - B3 SINE B2 -48 168 2 7 823 557 335 15 34 chr9 31267104 31267373 -92808799 + L1M2 LINE L1 4961 5224 -919 7 823 1011 273 44 61 chr9 31267355 31267379 -92808793 + Lx8 LINE L1 5400 5432 -415 7 823 294 29 0 0 chr9 31267379 31267414 -92808758 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 7 823 5009 278 65 43 chr9 31267414 31269270 -92806902 + Lx8 LINE L1 5433 7379 -94 7 823 288 0 0 0 chr9 31269270 31269302 -92806870 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 823 5009 279 71 37 chr9 31269302 31269392 -92806780 + Lx8 LINE L1 7380 7471 -2 7 823 21 0 0 0 chr9 31271837 31271858 -92804314 + GC_rich Low_complexity Low_complexity 1 21 0 7 823 378 0 0 0 chr9 31272311 31272353 -92803819 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 7 823 810 276 27 9 chr9 31272916 31273135 -92803037 - ID_B1 SINE B4 0 224 2 7 823 456 19 0 0 chr9 31273141 31273194 -92802978 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 823 811 249 60 41 chr9 31273197 31273465 -92802707 - B4A SINE B4 -18 274 2 7 823 309 280 88 20 chr9 31273687 31273789 -92802383 + PB1D10 SINE Alu 9 117 0 7 823 913 230 70 0 chr9 31273792 31273992 -92802180 + B3 SINE B2 2 215 -1 7 823 639 262 58 6 chr9 31274475 31274648 -92801524 + B3A SINE B2 1 182 -16 7 823 222 118 0 0 chr9 31274650 31274684 -92801488 + (CACG)n Simple_repeat Simple_repeat 1 34 0 7 823 256 353 145 13 chr9 31274744 31274896 -92801276 + MLT1J LTR MaLR 74 245 -267 7 823 342 0 0 0 chr9 31275469 31275507 -92800665 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 7 823 1012 39 0 0 chr9 31275508 31275638 -92800534 - B1_Mus1 SINE Alu -13 135 6 7 823 414 158 51 130 chr9 31275530 31275650 -92800522 - MT2B LTR ERVL -337 264 153 7 823 348 43 0 0 chr9 31275650 31275696 -92800476 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 823 414 158 51 130 chr9 31275696 31275713 -92800459 - MT2B LTR ERVL -449 152 138 7 823 982 167 18 6 chr9 31275716 31275885 -92800287 - Lx5 LINE L1 -443 6607 6437 7 823 853 274 189 15 chr9 31276029 31276488 -92799684 - L1MB4 LINE L1 -6 6174 5636 7 823 211 157 0 38 chr9 31276488 31276541 -92799631 + CT-rich Low_complexity Low_complexity 4 54 0 7 823 515 271 37 8 chr9 31276636 31276770 -92799402 - ID_B1 SINE B4 -83 141 4 7 823 207 204 0 0 chr9 31276778 31276822 -92799350 + C-rich Low_complexity Low_complexity 2 45 0 7 823 1854 104 70 3 chr9 31276972 31277271 -92798901 - ORR1A2 LTR MaLR -8 319 1 7 823 523 242 10 158 chr9 31277271 31277333 -92798839 + B4 SINE B4 37 92 -200 7 823 759 201 30 0 chr9 31277333 31277467 -92798705 + B1_Mur1 SINE Alu 5 142 -7 7 823 523 242 10 158 chr9 31277467 31277600 -92798572 + B4 SINE B4 93 203 -89 7 823 1077 267 35 72 chr9 31277690 31278146 -92798026 - L1MB4 LINE L1 -1781 4359 3921 7 823 5557 204 84 51 chr9 31278823 31279431 -92796741 - Lx5 LINE L1 -93 6957 6364 7 823 536 42 14 0 chr9 31279431 31279502 -92796670 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 7 823 755 221 15 0 chr9 31279503 31279639 -92796533 - B1_Mur4 SINE Alu -11 139 2 7 823 10571 158 52 22 chr9 31279639 31281871 -92794301 - Lx5 LINE L1 -687 6363 4009 7 823 559 303 46 142 chr9 31281896 31282242 -92793930 + RLTR23 LTR ERV1 11 323 -107 7 823 1963 96 63 53 chr9 31282271 31282590 -92793582 - RLTRETN_Mm LTR ERVK 0 322 1 7 823 8452 132 16 19 chr9 31282590 31283953 -92792219 - MMETn-int LTR ERVK 0 4844 3486 7 823 305 227 15 0 chr9 31283952 31284018 -92792154 - ETnERV2-int LTR ERVK -1213 6193 6127 7 823 6815 60 3 12 chr9 31283987 31284892 -92791280 - MMETn-int LTR ERVK -1703 3141 2245 7 823 952 91 8 0 chr9 31284892 31285024 -92791148 + RLTRETN_Mm LTR ERVK 190 322 0 7 823 3306 18 3 0 chr9 31285024 31285408 -92790764 + MTA_Mm LTR MaLR 12 396 0 7 823 419 238 9 47 chr9 31285408 31285496 -92790676 + RLTR23 LTR ERV1 347 430 0 7 823 22 0 0 0 chr9 31285746 31285768 -92790404 + GC_rich Low_complexity Low_complexity 1 22 0 7 823 8654 29 5 1 chr9 31286018 31287092 -92789080 - L1Md_F3 LINE L1 -2 6582 5505 7 823 352 279 53 7 chr9 31287218 31287369 -92788803 + RLTR6-int LTR ERV1 521 736 -6865 7 823 1956 338 89 58 chr9 31287653 31288877 -92787295 + RLTR6-int LTR ERV1 1292 2577 -5201 7 823 3572 74 2 0 chr9 31288877 31289307 -92786865 + L1_Mus1 LINE L1 6127 6557 -10 7 823 243 0 0 0 chr9 31289307 31289334 -92786838 + (TAA)n Simple_repeat Simple_repeat 1 27 0 7 823 1956 338 89 58 chr9 31289334 31289526 -92786646 + RLTR6-int LTR ERV1 2578 2756 -5022 7 823 2877 31 0 0 chr9 31289526 31289844 -92786328 + L1Md_A LINE L1 6264 6581 -1 7 823 1956 318 90 75 chr9 31289844 31292189 -92783983 + RLTR6-int LTR ERV1 2680 5061 -2495 7 823 1339 31 0 0 chr9 31292189 31292349 -92783823 + B2_Mm1a SINE B2 1 160 -33 7 823 222 37 0 0 chr9 31292349 31292376 -92783796 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7 823 442 338 23 2 chr9 31292387 31292568 -92783604 + RLTR6-int LTR ERV1 3846 3974 -1089 7 823 398 308 26 53 chr9 31292725 31292876 -92783296 + RLTR19-int LTR ERVK 4348 4494 -1643 7 823 329 327 12 18 chr9 31292971 31293142 -92783030 + RLTR6-int LTR ERV1 4459 4628 -62 7 823 835 247 79 127 chr9 31293207 31293648 -92782524 + RLTR23 LTR ERV1 11 430 0 7 823 1285 184 75 75 chr9 31293648 31293798 -92782374 - L1_Mur3 LINE L1 -1867 4013 3867 7 823 186 43 0 0 chr9 31293798 31293821 -92782351 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 823 1285 184 75 75 chr9 31293821 31293867 -92782305 - L1_Mur3 LINE L1 -2014 3866 3831 7 823 1366 61 77 6 chr9 31293867 31294049 -92782123 - B2_Mm2 SINE B2 0 195 1 7 823 1285 184 75 75 chr9 31294049 31294197 -92781975 - L1_Mur3 LINE L1 -2050 3830 3668 7 823 330 318 60 25 chr9 31294217 31294417 -92781755 - RLTR15 LTR ERVK -18 341 135 7 823 326 198 22 34 chr9 31294512 31294601 -92781571 - RLTR15 LTR ERVK -238 121 34 7 823 3700 150 36 7 chr9 31294623 31295313 -92780859 - L1_Mur3 LINE L1 -2204 3676 2967 7 823 1141 169 40 14 chr9 31295314 31295536 -92780636 + ORR1C2 LTR MaLR 156 383 -1 7 823 1834 298 86 25 chr9 31295556 31296713 -92779459 - Lx8 LINE L1 -929 6544 5280 7 823 2173 208 29 5 chr9 31296699 31297143 -92779029 + Lx9 LINE L1 6986 7440 -204 7 823 227 122 0 20 chr9 31297175 31297225 -92778947 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 823 784 121 68 23 chr9 31297242 31297419 -92778753 + Lx9 LINE L1 7460 7644 0 7 823 180 77 0 0 chr9 31297581 31297607 -92778565 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 823 275 229 31 0 chr9 31297614 31297673 -92778499 + A-rich Low_complexity Low_complexity 2 63 0 7 823 926 170 14 0 chr9 31297673 31297814 -92778358 + B1_Mur4 SINE Alu 1 143 -7 7 823 275 229 31 0 chr9 31297814 31297850 -92778322 + A-rich Low_complexity Low_complexity 64 99 0 7 823 791 75 8 0 chr9 31297858 31297978 -92778194 + (CCAA)n Simple_repeat Simple_repeat 2 122 0 7 823 2202 251 63 49 chr9 31298029 31298370 -92777802 - Lx8 LINE L1 -573 5274 4934 7 823 1275 68 0 0 chr9 31298370 31298518 -92777654 - B1_Mus1 SINE Alu 0 148 1 7 823 2202 261 62 47 chr9 31298518 31299048 -92777124 - Lx8 LINE L1 -1155 4988 4441 7 823 4735 174 44 14 chr9 31299048 31299904 -92776268 - Lx2B LINE L1 0 7000 6119 7 823 14172 134 54 11 chr9 31299904 31300962 -92775210 - L1_Mur1 LINE L1 -528 5358 4295 7 823 1807 21 0 0 chr9 31300962 31301155 -92775017 - B2_Mm1a SINE B2 0 193 1 7 823 14172 134 54 11 chr9 31301155 31301362 -92774810 - L1_Mur1 LINE L1 -1592 4294 3987 7 823 1245 73 79 0 chr9 31301362 31301527 -92774645 - B2_Mm1t SINE B2 -14 179 2 7 823 14172 134 54 11 chr9 31301527 31302726 -92773446 - L1_Mur1 LINE L1 -1900 3986 2786 7 823 4214 122 43 3 chr9 31302727 31303394 -92772778 + L1_Mur1 LINE L1 2080 2773 -3113 7 823 593 237 83 26 chr9 31303404 31303668 -92772504 - Lx8 LINE L1 -1437 4410 4132 7 823 956 242 77 59 chr9 31303663 31304054 -92772118 - L1M4 LINE L1 -2369 3777 3380 7 823 495 329 98 100 chr9 31304054 31304463 -92771709 - MLT1A1 LTR MaLR 0 408 1 7 823 607 252 136 53 chr9 31304463 31304861 -92771311 - L1M4 LINE L1 -2762 3378 2948 7 823 189 0 0 0 chr9 31304989 31305010 -92771162 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 823 474 326 50 35 chr9 31305077 31305277 -92770895 - B4A SINE B4 -88 204 2 7 823 1256 55 0 0 chr9 31305559 31305705 -92770467 - B1_Mm SINE Alu 0 147 2 7 823 25 0 0 0 chr9 31306381 31306406 -92769766 + AT_rich Low_complexity Low_complexity 1 25 0 7 823 405 0 0 0 chr9 31307648 31307693 -92768479 + (TTA)n Simple_repeat Simple_repeat 2 46 0 7 823 540 250 102 8 chr9 31308421 31308569 -92767603 - B3 SINE B2 0 198 34 7 823 374 299 34 83 chr9 31308580 31308676 -92767496 - L1MC LINE L1 -631 5702 5608 7 823 877 154 0 56 chr9 31308676 31308820 -92767352 + B1_Mus1 SINE Alu 1 136 -12 7 823 762 103 0 0 chr9 31308825 31308961 -92767211 + (CA)n Simple_repeat Simple_repeat 2 137 0 7 823 374 299 34 83 chr9 31308961 31309062 -92767110 - L1MC LINE L1 -726 5607 5509 7 823 1835 155 27 61 chr9 31309180 31309509 -92766663 + ORR1A3 LTR MaLR 1 318 -8 7 823 308 315 45 15 chr9 31309579 31309711 -92766461 - L1MC LINE L1 -890 5443 5308 7 823 651 276 94 6 chr9 31309730 31309901 -92766271 + B3A SINE B2 3 188 -10 7 823 235 301 83 31 chr9 31309994 31310090 -92766082 - PB1D7 SINE Alu -2 118 18 7 823 774 252 68 37 chr9 31310127 31310243 -92765929 - RLTR11A LTR ERVK -172 273 156 7 823 1338 58 0 0 chr9 31310243 31310415 -92765757 + (TTTCC)n Simple_repeat Simple_repeat 3 174 0 7 823 774 226 78 25 chr9 31310415 31310575 -92765597 - RLTR11A LTR ERVK -362 166 2 7 823 2096 209 44 15 chr9 31310579 31311100 -92765072 + L1_Mur2 LINE L1 2081 2616 -3261 7 823 467 218 0 36 chr9 31311086 31311224 -92764948 + L1_Mur2 LINE L1 2810 2942 -2935 7 823 410 250 0 10 chr9 31311224 31311325 -92764847 - RLTR33 LTR ERVK -266 412 313 7 823 6555 76 16 18 chr9 31311325 31312913 -92763259 - L1VL4 LINE L1 -1768 1791 206 7 823 438 20 0 0 chr9 31312961 31313012 -92763160 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 823 397 257 0 96 chr9 31313039 31313164 -92763008 - PB1 SINE Alu -2 125 13 7 823 903 259 40 34 chr9 31313323 31313650 -92762522 - L1MA4A LINE L1 -370 5930 5602 7 823 312 266 36 9 chr9 31313651 31313761 -92762411 + L1M2 LINE L1 3084 3196 -2947 7 823 3128 158 69 88 chr9 31313764 31314387 -92761785 - RMER19C LTR ERVK 0 611 1 7 823 2016 261 61 61 chr9 31314427 31315251 -92760921 + L1_Mur2 LINE L1 3731 4554 -1326 7 823 537 294 0 8 chr9 31315320 31315447 -92760725 - B3A SINE B2 -68 130 5 7 823 530 312 43 104 chr9 31315528 31315739 -92760433 - B3A SINE B2 0 198 1 7 823 308 249 116 85 chr9 31316133 31316322 -92759850 + MIR SINE MIR 58 252 -10 7 823 3079 206 77 38 chr9 31316436 31317203 -92758969 + RLTR40 LTR ERVK 21 817 0 7 823 520 287 41 0 chr9 31318193 31318315 -92757857 + RSINE1 SINE B4 16 142 -23 7 823 281 319 68 26 chr9 31318416 31318606 -92757566 - L1M5 LINE L1 -1923 4223 4026 7 823 684 321 140 14 chr9 31318610 31319118 -92757054 - L1MD LINE L1 -3260 2886 2315 7 823 189 0 0 0 chr9 31319345 31319366 -92756806 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 823 420 225 129 43 chr9 31319397 31319513 -92756659 - RSINE1 SINE B4 -35 130 5 7 823 258 309 0 0 chr9 31319529 31319597 -92756575 - RMER15 LTR ERVL -105 470 403 7 823 251 208 12 38 chr9 31319674 31319754 -92756418 + (CCCTAA)n Simple_repeat Simple_repeat 2 79 0 7 823 2279 283 103 6 chr9 31319782 31319841 -92756331 - Lx8 LINE L1 -450 7023 6944 8 823 225 94 0 0 chr9 31319841 31319873 -92756299 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 8 823 2279 283 103 6 chr9 31319873 31320514 -92755658 - Lx8 LINE L1 -530 6943 6256 8 823 902 83 15 0 chr9 31320564 31320696 -92755476 - MTC LTR MaLR -287 134 1 8 823 947 108 18 12 chr9 31320702 31320870 -92755302 - MTC-int LTR MaLR -5 1253 1085 8 823 1858 224 209 22 chr9 31320872 31321452 -92754720 + RMER1A Other Other 91 778 -252 8 823 236 265 11 108 chr9 31321570 31321663 -92754509 + RSINE1 SINE B4 82 165 0 8 823 345 47 0 0 chr9 31321955 31321998 -92754174 + (ATG)n Simple_repeat Simple_repeat 2 44 0 8 823 449 238 19 9 chr9 31322001 31322107 -92754065 - PB1 SINE Alu 0 127 21 8 823 1791 160 163 0 chr9 31322279 31322610 -92753562 + MTC LTR MaLR 37 421 0 8 823 1264 267 163 31 chr9 31322796 31323380 -92752792 + Lx7 LINE L1 7036 7696 0 8 823 404 254 112 32 chr9 31323431 31323618 -92752554 - L1MC1 LINE L1 -9 6324 6123 8 823 247 222 0 18 chr9 31323643 31323698 -92752474 - L1MC1 LINE L1 -1390 4756 4703 8 823 603 295 72 81 chr9 31324026 31324373 -92751799 + L1M3 LINE L1 4901 5244 -896 8 823 679 232 50 3 chr9 31324646 31324868 -92751304 - MT2A LTR ERVL -109 424 146 8 823 479 217 56 9 chr9 31325227 31325334 -92750838 - MTC LTR MaLR -72 349 238 8 823 236 229 70 78 chr9 31325274 31325402 -92750770 - RLTR9F LTR ERVK -247 168 42 8 823 2413 219 113 14 chr9 31325354 31325983 -92750189 + ORR1D2-int LTR MaLR 679 1369 -1 8 102 1279 220 142 21 chr9 31325984 31326314 -92749858 + ORR1D2 LTR MaLR 1 370 0 8 824 302 231 123 0 chr9 31326350 31326415 -92749757 - ID SINE ID -147 77 5 8 824 441 0 0 0 chr9 31326431 31326480 -92749692 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 824 403 333 0 8 chr9 31326480 31326598 -92749574 - RSINE1 SINE B4 -43 122 6 8 824 557 188 0 38 chr9 31327247 31327352 -92748820 - RLTR20D LTR ERVK -408 160 60 8 824 377 276 159 6 chr9 31327359 31327541 -92748631 + L1_Mus2 LINE L1 598 807 -5809 8 824 32286 107 19 2 chr9 31327542 31333524 -92742648 + L1_Mus2 LINE L1 509 6565 -1 8 824 303 64 21 0 chr9 31333534 31333581 -92742591 - RLTR16 LTR ERVK -457 48 1 8 824 307 16 78 31 chr9 31333800 31333864 -92742308 + (TTTTG)n Simple_repeat Simple_repeat 3 69 0 8 824 21 57 0 0 chr9 31334244 31334279 -92741893 + AT_rich Low_complexity Low_complexity 1 35 0 8 824 525 295 56 10 chr9 31334292 31334487 -92741685 + ERVL-B4-int LTR ERVL 4407 4610 -1104 8 824 489 283 91 48 chr9 31334560 31334710 -92741462 + ERVL-B4-int LTR ERVL 4658 4800 -957 8 824 871 96 104 0 chr9 31334710 31334835 -92741337 + B1_Mus2 SINE Alu 1 138 -9 8 824 207 0 0 0 chr9 31334835 31334858 -92741314 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 8 824 489 283 91 48 chr9 31334858 31334936 -92741236 + ERVL-B4-int LTR ERVL 4801 4896 -861 8 824 567 0 0 0 chr9 31335171 31335234 -92740938 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 824 1246 167 0 35 chr9 31335693 31335923 -92740249 - URR1B DNA MER1_type -3 222 1 8 824 962 151 39 52 chr9 31336851 31337081 -92739091 - RMER10A LTR ERVL 0 442 216 8 824 1110 165 16 28 chr9 31337063 31337318 -92738854 - RMER10A LTR ERVL -161 281 30 8 824 931 281 106 6 chr9 31337739 31338068 -92738104 - Lx8 LINE L1 -70 7403 7042 8 824 1677 238 16 8 chr9 31338101 31338465 -92737707 + Lx6 LINE L1 6945 7311 -149 8 824 398 250 55 31 chr9 31338822 31338950 -92737222 - Lx8 LINE L1 -526 6947 6817 8 824 234 244 33 44 chr9 31339014 31339104 -92737068 + MTD LTR MaLR 331 419 0 8 824 412 202 51 41 chr9 31339309 31339407 -92736765 - PB1D9 SINE Alu -21 99 1 8 824 347 208 8 46 chr9 31339832 31339963 -92736209 + RLTR11B LTR ERVK 133 258 -195 8 824 590 163 11 0 chr9 31340009 31340187 -92735985 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 8 824 558 250 73 40 chr9 31340339 31340489 -92735683 + RSINE1 SINE B4 3 157 -8 8 824 21719 17 0 0 chr9 31340734 31343193 -92732979 + L1Md_T LINE L1 3128 5586 -297 8 824 8483 38 0 3 chr9 31343193 31344192 -92731980 + L1Md_T LINE L1 5587 6582 0 8 824 203 81 54 0 chr9 31344293 31344330 -92731842 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 8 824 986 188 59 10 chr9 31344338 31344542 -92731630 - B3 SINE B2 -1 215 2 8 824 572 212 93 21 chr9 31345315 31345455 -92730717 + B3 SINE B2 1 150 -66 8 824 988 96 32 0 chr9 31345473 31345630 -92730542 + B2_Mm2 SINE B2 34 195 0 8 824 463 333 32 21 chr9 31345673 31345860 -92730312 + ERVL-B4-int LTR ERVL 5107 5295 -372 8 824 483 18 0 0 chr9 31345878 31345934 -92730238 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 824 642 178 74 31 chr9 31345934 31346096 -92730076 + ERVL-B4-int LTR ERVL 5418 5586 -128 8 824 883 244 53 74 chr9 31346277 31346560 -92729612 - B4A SINE B4 -14 278 2 8 824 485 297 103 49 chr9 31346593 31346933 -92729239 + MLT2B1 LTR ERVL 57 528 -39 8 824 226 291 0 106 chr9 31346950 31347073 -92729099 - PB1D10 SINE Alu -7 110 1 8 824 970 129 7 20 chr9 31347222 31347372 -92728800 - B1_Mur3 SINE Alu -1 148 1 8 824 231 215 0 0 chr9 31347386 31347451 -92728721 + (TATG)n Simple_repeat Simple_repeat 4 68 0 8 824 724 196 6 12 chr9 31347497 31347514 -92728658 + polypyrimidine Low_complexity Low_complexity 153 169 0 8 824 279 0 0 0 chr9 31347514 31347545 -92728627 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 8 824 1305 83 0 0 chr9 31347545 31347725 -92728447 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 824 724 196 6 12 chr9 31347725 31347876 -92728296 + CT-rich Low_complexity Low_complexity 2 152 0 8 824 678 267 51 25 chr9 31347876 31348103 -92728069 - B4 SINE B4 -46 246 13 8 824 197 132 26 0 chr9 31348162 31348200 -92727972 + (TATG)n Simple_repeat Simple_repeat 4 42 0 8 824 658 239 252 0 chr9 31348204 31348434 -92727738 - B4 SINE B4 -3 289 2 8 824 416 275 112 6 chr9 31348534 31348713 -92727459 + B3A SINE B2 1 198 0 8 824 300 53 0 0 chr9 31348726 31348764 -92727408 + (TCC)n Simple_repeat Simple_repeat 3 40 0 8 824 769 154 7 26 chr9 31349119 31349272 -92726900 - URR1A DNA MER1_type 0 226 77 8 824 360 234 4 13 chr9 31349977 31350077 -92726095 + PB1D10 SINE Alu 13 113 -36 8 824 302 327 92 46 chr9 31350463 31350572 -92725600 - PB1 SINE Alu -3 124 11 8 824 210 233 8 55 chr9 31350595 31350722 -92725450 + C-rich Low_complexity Low_complexity 4 124 0 8 824 295 241 116 40 chr9 31350848 31351021 -92725151 - L1MEc LINE L1 -5397 1003 818 8 824 21 0 0 0 chr9 31351021 31351042 -92725130 + AT_rich Low_complexity Low_complexity 1 21 0 8 824 968 290 156 90 chr9 31351473 31352022 -92724150 - L1M2 LINE L1 -378 5469 4930 8 824 252 0 0 0 chr9 31352022 31352050 -92724122 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 824 968 298 151 39 chr9 31352050 31352318 -92723854 - L1M2 LINE L1 -1157 4986 4646 8 824 216 0 0 0 chr9 31352318 31352342 -92723830 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 824 968 290 156 90 chr9 31352342 31352489 -92723683 - L1M2 LINE L1 -1498 4645 4443 8 824 442 249 191 24 chr9 31352543 31352804 -92723368 - L1M2 LINE L1 -2427 3716 3437 8 824 1215 89 0 0 chr9 31352809 31352988 -92723184 + (TCC)n Simple_repeat Simple_repeat 2 180 0 8 824 467 216 9 0 chr9 31352988 31353104 -92723068 + CT-rich Low_complexity Low_complexity 1 117 0 8 824 986 153 0 0 chr9 31353107 31353257 -92722915 - B1_Mur4 SINE Alu 0 150 1 8 824 542 288 42 11 chr9 31353360 31353564 -92722608 - L1M2 LINE L1 -3910 2639 2419 8 824 32155 119 11 33 chr9 31353545 31360006 -92716166 - L1_Mus2 LINE L1 0 6566 314 8 824 639 288 91 35 chr9 31360011 31360491 -92715681 - L1M2 LINE L1 -4096 2453 1867 8 824 290 184 56 0 chr9 31360512 31360637 -92715535 + GA-rich Low_complexity Low_complexity 1 132 0 8 824 291 323 61 52 chr9 31360637 31360849 -92715323 - B4A SINE B4 -77 215 2 8 824 533 167 0 22 chr9 31361521 31361613 -92714559 - B1_Mur1 SINE Alu -7 142 53 8 824 634 207 50 36 chr9 31361646 31361786 -92714386 + B1_Mur3 SINE Alu 1 142 -7 8 824 521 30 15 0 chr9 31361790 31361857 -92714315 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 8 824 450 0 0 0 chr9 31361942 31361992 -92714180 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 824 565 257 121 0 chr9 31361994 31362134 -92714038 - B3A SINE B2 -41 157 1 8 824 736 252 155 118 chr9 31362146 31362330 -92713842 - Lx8 LINE L1 -136 7337 7134 8 824 952 171 37 5 chr9 31362330 31362518 -92713654 - B2_Mm2 SINE B2 -1 194 1 8 824 908 212 81 0 chr9 31362524 31362722 -92713450 - B3 SINE B2 0 216 3 8 824 736 252 155 118 chr9 31362722 31362930 -92713242 - Lx8 LINE L1 -340 7133 6923 8 824 360 191 32 0 chr9 31362936 31362999 -92713173 - Lx8 LINE L1 -857 6616 6552 8 824 239 238 179 62 chr9 31362999 31363020 -92713152 - B4A SINE B4 -167 125 1 8 824 518 198 0 0 chr9 31363020 31363111 -92713061 - B3 SINE B2 -125 91 1 8 824 1174 81 0 0 chr9 31363749 31363897 -92712275 + B1_Mus1 SINE Alu 1 148 0 8 824 207 0 0 0 chr9 31363897 31363920 -92712252 + (A)n Simple_repeat Simple_repeat 1 23 0 8 824 192 136 0 0 chr9 31363923 31363956 -92712216 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 8 824 216 0 0 0 chr9 31363956 31363980 -92712192 + (CCA)n Simple_repeat Simple_repeat 1 24 0 8 824 192 136 0 0 chr9 31363980 31363990 -92712182 + (CAAA)n Simple_repeat Simple_repeat 2 11 0 8 824 263 28 96 27 chr9 31363983 31364056 -92712116 + (CAAAC)n Simple_repeat Simple_repeat 2 79 0 8 824 492 230 45 1 chr9 31364939 31365069 -92711103 - MTD LTR MaLR -2 417 270 8 824 753 184 0 0 chr9 31365125 31365288 -92710884 + (TG)n Simple_repeat Simple_repeat 1 163 0 8 824 807 254 16 5 chr9 31365288 31365482 -92710690 - B3A SINE B2 -2 196 1 8 824 563 305 16 16 chr9 31365482 31365675 -92710497 - MTD LTR MaLR -209 210 18 8 824 678 270 94 117 chr9 31365792 31366144 -92710028 + MER2 DNA MER2_type 1 344 -1 8 824 697 226 11 38 chr9 31366306 31366490 -92709682 + B3 SINE B2 37 215 -1 8 824 288 0 0 0 chr9 31366496 31366528 -92709644 + (TTA)n Simple_repeat Simple_repeat 1 32 0 8 824 253 303 0 0 chr9 31367771 31367847 -92708325 + L1MB1 LINE L1 5848 5923 -266 8 824 1002 247 81 28 chr9 31368197 31368555 -92707617 - L1MA10 LINE L1 -3 6331 5955 8 824 192 77 0 0 chr9 31368918 31368944 -92707228 + (CTATA)n Simple_repeat Simple_repeat 4 29 0 8 824 408 40 0 0 chr9 31369271 31369321 -92706851 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 824 452 270 0 0 chr9 31369448 31369548 -92706624 - PB1D10 SINE Alu -12 105 6 8 824 227 319 166 16 chr9 31370124 31370306 -92705866 + MIRm SINE MIR 24 232 -36 9 824 2455 191 54 20 chr9 31371087 31371638 -92704534 - RMER15 LTR ERVL 0 575 6 9 824 329 290 37 37 chr9 31371954 31372090 -92704082 - RMER15 LTR ERVL -17 558 423 9 824 28 0 0 0 chr9 31372995 31373023 -92703149 + AT_rich Low_complexity Low_complexity 1 28 0 9 824 253 289 0 38 chr9 31375076 31375155 -92701017 + ID4_ SINE ID 8 83 0 9 824 1169 266 74 42 chr9 31375859 31376263 -92699909 - Lx7 LINE L1 -1691 6005 5589 9 824 533 363 30 19 chr9 31376584 31376848 -92699324 - B4A SINE B4 0 292 26 9 824 255 273 99 112 chr9 31377026 31377187 -92698985 - RSINE1 SINE B4 -6 159 1 9 824 890 266 112 58 chr9 31377217 31377644 -92698528 - L1M2 LINE L1 -1096 5749 5300 9 824 1426 90 16 0 chr9 31377687 31377875 -92698297 - B2_Mm2 SINE B2 -4 191 1 9 824 276 30 0 0 chr9 31377881 31377914 -92698258 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 824 649 168 9 0 chr9 31377914 31378021 -92698151 - B1_Mur3 SINE Alu -32 117 10 9 824 378 0 0 0 chr9 31378062 31378104 -92698068 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 824 274 339 23 62 chr9 31378106 31378235 -92697937 - Lx8 LINE L1 -146 7327 7204 9 824 704 264 108 21 chr9 31378270 31378595 -92697577 - L1M2 LINE L1 -1539 5306 4954 9 824 512 279 59 46 chr9 31378610 31378914 -92697258 - L1_Mur3 LINE L1 -2462 3418 3111 9 824 894 286 87 65 chr9 31379031 31379401 -92696771 - MTEa LTR MaLR -1 378 1 9 824 268 327 20 10 chr9 31379414 31379425 -92696747 - B3 SINE B2 -109 107 5 9 824 302 311 11 11 chr9 31379425 31379516 -92696656 - B4A SINE B4 -197 95 5 9 824 352 325 98 57 chr9 31379703 31380511 -92695661 - L1M2 LINE L1 -3912 2637 1759 9 824 296 290 0 0 chr9 31381321 31381390 -92694782 - ID4 SINE ID -8 75 7 9 824 338 253 13 0 chr9 31381455 31381534 -92694638 - ID4_ SINE ID -2 81 2 9 824 1011 80 0 0 chr9 31382099 31382237 -92693935 + (TTCTC)n Simple_repeat Simple_repeat 1 138 0 9 824 1304 63 6 0 chr9 31382237 31382412 -92693760 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 9 824 444 237 13 7 chr9 31382412 31382565 -92693607 + CT-rich Low_complexity Low_complexity 2 155 0 9 824 810 265 68 43 chr9 31382581 31382861 -92693311 - B4 SINE B4 -4 288 2 9 824 778 320 72 91 chr9 31382912 31383306 -92692866 - Charlie1a DNA MER1_type -631 824 430 9 824 315 0 0 0 chr9 31383306 31383341 -92692831 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 9 824 778 320 72 91 chr9 31383341 31383365 -92692807 - Charlie1a DNA MER1_type -1026 429 411 9 824 366 80 0 0 chr9 31383365 31383415 -92692757 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 9 824 778 320 72 91 chr9 31383415 31383757 -92692415 - Charlie1a DNA MER1_type -1045 410 77 9 824 1439 83 0 35 chr9 31387175 31387375 -92688797 + B2_Mm2 SINE B2 3 195 0 9 824 352 325 145 31 chr9 31387408 31387760 -92688412 - L1M4 LINE L1 -1586 4560 4169 9 824 35 0 0 0 chr9 31387957 31387992 -92688180 + AT_rich Low_complexity Low_complexity 1 35 0 9 824 358 236 0 0 chr9 31389213 31389285 -92686887 - ID4_ SINE ID -11 72 1 9 824 311 218 198 9 chr9 31392176 31392287 -92683885 - L2a LINE L2 -6 3420 3289 9 824 552 261 18 29 chr9 31392682 31392894 -92683278 - L1MA4 LINE L1 -1543 5930 5739 9 824 522 72 58 46 chr9 31392916 31393090 -92683082 + (TG)n Simple_repeat Simple_repeat 1 176 0 9 824 710 314 17 43 chr9 31393099 31393399 -92682773 - B4A SINE B4 0 292 1 9 824 765 286 109 46 chr9 31393403 31393751 -92682421 - L1MA4 LINE L1 -522 5778 5409 9 824 594 258 89 62 chr9 31393744 31394126 -92682046 + L1_Rod LINE L1 4915 5364 -779 9 824 303 293 24 31 chr9 31394474 31394601 -92681571 + MER63B DNA AcHobo 308 433 -3 9 824 296 44 44 0 chr9 31395294 31395339 -92680833 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 9 824 317 206 16 0 chr9 31395361 31395424 -92680748 - ID4_ SINE ID -18 65 2 9 824 636 81 0 0 chr9 31395687 31395774 -92680398 + (GA)n Simple_repeat Simple_repeat 1 87 0 9 824 242 309 24 0 chr9 31396810 31396894 -92679278 + PB1D10 SINE Alu 1 86 -31 9 824 455 260 37 96 chr9 31396857 31396912 -92679260 + B4A SINE B4 43 218 -74 9 824 1046 38 0 0 chr9 31396912 31397044 -92679128 + B1_Mus1 SINE Alu 8 139 -9 9 824 288 0 0 0 chr9 31397044 31397076 -92679096 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 824 468 35 0 0 chr9 31397452 31397510 -92678662 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 824 1101 38 174 25 chr9 31397830 31397991 -92678181 - B2_Mm2 SINE B2 -10 185 1 9 824 252 288 0 0 chr9 31398250 31398309 -92677863 - BC1_Mm scRNA scRNA -91 61 3 9 824 2633 133 10 0 chr9 31399374 31399764 -92676408 + ORR1B1 LTR MaLR 1 394 0 9 824 210 37 0 0 chr9 31400314 31400341 -92675831 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 9 824 446 229 131 0 chr9 31400354 31400476 -92675696 - B1_Mus1 SINE Alu -9 139 2 9 824 572 275 45 55 chr9 31400562 31400678 -92675494 - ID_B1 SINE B4 -25 199 89 9 824 573 15 0 0 chr9 31400678 31400744 -92675428 + (CA)n Simple_repeat Simple_repeat 2 67 0 9 824 572 275 45 55 chr9 31400744 31400827 -92675345 - ID SINE ID -136 88 2 9 824 189 203 217 17 chr9 31401239 31401299 -92674873 + MIRb SINE MIR 113 184 -84 9 824 699 71 0 0 chr9 31401874 31401972 -92674200 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 9 824 1202 102 6 6 chr9 31401997 31402329 -92673843 + (TCTA)n Simple_repeat Simple_repeat 1 332 0 9 824 204 97 0 0 chr9 31402354 31402385 -92673787 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 9 824 311 250 321 0 chr9 31402401 31402513 -92673659 - RSINE1 SINE B4 -17 148 1 9 824 214 164 18 18 chr9 31402557 31402613 -92673559 + CT-rich Low_complexity Low_complexity 2 57 0 9 824 180 280 20 0 chr9 31402796 31402846 -92673326 - MIRc SINE MIR -128 140 90 9 824 362 324 9 0 chr9 31403542 31403653 -92672519 + PB1D10 SINE Alu 1 112 -5 9 824 597 281 132 73 chr9 31404101 31404593 -92671579 - L1MA9 LINE L1 -1 6311 5791 9 824 180 0 0 0 chr9 31404723 31404743 -92671429 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 824 913 198 90 116 chr9 31404803 31405151 -92671021 - RMER21B LTR ERV1 -263 684 274 9 824 773 240 55 47 chr9 31405165 31405361 -92670811 - L1M2 LINE L1 -342 5820 5628 9 824 1812 198 66 8 chr9 31405361 31405753 -92670419 + MTD LTR MaLR 1 415 -4 9 824 773 238 60 39 chr9 31405753 31405839 -92670333 - L1M2 LINE L1 -664 5627 5541 9 824 1767 257 133 42 chr9 31405919 31406755 -92669417 + L1MC2 LINE L1 5424 6335 -9 9 824 224 128 0 60 chr9 31406836 31406886 -92669286 - PB1D7 SINE Alu -6 114 68 9 824 534 238 45 30 chr9 31407267 31407401 -92668771 + ID_B1 SINE B4 1 136 -88 9 824 1041 241 5 0 chr9 31407492 31407704 -92668468 + B3 SINE B2 4 216 0 9 824 520 89 8 51 chr9 31408146 31408264 -92667908 + (CAGAGA)n Simple_repeat Simple_repeat 5 117 0 9 824 392 340 106 29 chr9 31408267 31408579 -92667593 + MER90 LTR ERV1 6 341 -234 9 824 267 31 0 0 chr9 31409017 31409049 -92667123 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 824 654 330 128 19 chr9 31409088 31409666 -92666506 + L1MC4 LINE L1 6744 7384 -658 9 824 825 245 14 28 chr9 31409848 31410023 -92666149 + B3 SINE B2 2 178 -38 9 824 306 50 0 0 chr9 31410023 31410063 -92666109 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 824 825 245 14 28 chr9 31410063 31410101 -92666071 + B3 SINE B2 179 212 -4 9 824 224 104 42 0 chr9 31410991 31411039 -92665133 + (TCTCTG)n Simple_repeat Simple_repeat 5 54 0 9 824 448 161 0 0 chr9 31411039 31411120 -92665052 - B1_Mur3 SINE Alu 0 149 69 9 824 301 297 38 23 chr9 31411148 31411279 -92664893 - L1MA4A LINE L1 -361 5942 5810 9 824 395 334 29 1 chr9 31413095 31413300 -92662872 - MIRc SINE MIR -39 229 22 9 824 524 15 15 0 chr9 31413533 31413598 -92662574 + (TC)n Simple_repeat Simple_repeat 1 66 0 9 824 201 147 0 0 chr9 31414554 31414588 -92661584 + (CTG)n Simple_repeat Simple_repeat 2 35 0 9 824 208 317 0 0 chr9 31417229 31417289 -92658883 + L2c LINE L2 3280 3339 -48 9 824 215 258 87 33 chr9 31419937 31420029 -92656143 + MIRb SINE MIR 95 191 -77 9 824 445 224 0 20 chr9 31420519 31420619 -92655553 + PB1D10 SINE Alu 2 99 -18 9 824 239 234 0 59 chr9 31421236 31421304 -92654868 - MLT1A1 LTR MaLR -311 97 34 9 824 253 306 27 27 chr9 31421382 31421530 -92654642 - L2 LINE L2 -434 2985 2838 9 824 248 344 16 16 chr9 31421533 31421657 -92654515 + MIR SINE MIR 30 153 -55 9 824 1452 255 156 14 chr9 31422939 31423671 -92652501 - L1MB7 LINE L1 -105 6939 6101 9 824 522 238 47 8 chr9 31423669 31423796 -92652376 - Lx8 LINE L1 -596 6877 6746 9 824 1163 277 77 64 chr9 31423792 31424593 -92651579 - L1MB7 LINE L1 -1810 5190 4379 9 824 239 188 43 14 chr9 31424671 31424741 -92651431 - L1MB7 LINE L1 -3314 3692 3621 9 824 381 151 35 0 chr9 31424746 31424832 -92651340 + CT-rich Low_complexity Low_complexity 2 90 0 9 824 709 181 0 8 chr9 31424832 31424960 -92651212 - B1_Mur1 SINE Alu -16 133 7 9 824 818 258 205 18 chr9 31424965 31425467 -92650705 - L1MB7 LINE L1 -3374 3632 3037 9 824 297 300 113 57 chr9 31426107 31426354 -92649818 - L1MB7 LINE L1 -4878 2130 1870 9 824 1349 99 16 5 chr9 31426377 31426569 -92649603 - B2_Mm2 SINE B2 -1 194 1 9 824 597 283 44 31 chr9 31426648 31426948 -92649224 - L1MB7 LINE L1 -5157 1747 1428 9 824 21 0 0 0 chr9 31427633 31427654 -92648518 + AT_rich Low_complexity Low_complexity 1 21 0 9 824 236 296 26 53 chr9 31428214 31428328 -92647844 + L1M5 LINE L1 5466 5576 -664 9 824 206 62 31 0 chr9 31428444 31428476 -92647696 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 9 824 801 266 106 28 chr9 31428680 31429001 -92647171 + MLT1A0 LTR MaLR 10 355 -10 9 824 282 311 11 84 chr9 31429138 31429224 -92646948 - MLT1C LTR MaLR -8 459 381 9 824 1975 115 20 121 chr9 31429224 31429570 -92646602 + RLTR10E LTR ERVK 1 311 0 9 824 282 311 11 84 chr9 31429570 31429662 -92646510 - MLT1C LTR MaLR -87 380 294 9 824 244 306 119 78 chr9 31430120 31430389 -92645783 + MLT2B2 LTR ERVL 20 299 -216 9 824 1202 142 101 10 chr9 31430495 31430702 -92645470 + URR1A DNA MER1_type 1 226 0 9 824 306 0 0 0 chr9 31430935 31430969 -92645203 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 824 15157 109 27 6 chr9 31431115 31433398 -92642774 + L1_Mm LINE L1 3192 5521 -362 9 824 1245 107 11 11 chr9 31433400 31433579 -92642593 - B2_Mm1t SINE B2 -14 179 1 1 824 1536 297 100 19 chr9 31433639 31434277 -92641895 + Lx9 LINE L1 6203 6892 -752 1 824 914 323 24 78 chr9 31434893 31435316 -92640856 + Lx9 LINE L1 6891 7290 -354 1 824 23 0 0 0 chr9 31435532 31435555 -92640617 + AT_rich Low_complexity Low_complexity 1 23 0 1 824 471 244 16 48 chr9 31435597 31435722 -92640450 + B4A SINE B4 5 125 -167 1 824 541 241 80 33 chr9 31435849 31435999 -92640173 - B3A SINE B2 -1 197 41 1 824 641 312 96 29 chr9 31436218 31436594 -92639578 - MER21B LTR ERV1 -33 830 430 1 824 269 272 196 0 chr9 31436747 31436839 -92639333 - MER21B LTR ERV1 -656 207 98 1 824 15104 97 79 14 chr9 31436846 31439189 -92636983 - L1_Mm LINE L1 -1536 4347 1853 1 824 3155 62 10 24 chr9 31439189 31439606 -92636566 + RLTR10A LTR ERVK 1 411 0 1 824 4834 48 89 31 chr9 31439608 31440259 -92635913 + RLTR10-int LTR ERVK 304 992 -995 1 824 442 289 34 50 chr9 31440421 31440683 -92635489 + RLTR10-int LTR ERVK 1309 1566 -6015 1 824 368 177 0 0 chr9 31440695 31440757 -92635415 + RLTR10-int LTR ERVK 442 503 -6039 1 824 2055 82 121 13 chr9 31440757 31441227 -92634945 + RLTR10-int LTR ERVK 5007 5527 -1015 1 824 4939 106 51 32 chr9 31441231 31442127 -92634045 + RLTR10-int LTR ERVK 1288 1986 -1 1 824 2028 51 343 0 chr9 31442127 31442433 -92633739 + RLTR10A LTR ERVK 1 411 0 1 824 5269 79 20 1 chr9 31442433 31443724 -92632448 - L1VL4 LINE L1 -2056 1503 183 1 824 612 101 0 0 chr9 31443763 31443852 -92632320 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 824 597 312 76 25 chr9 31443877 31444245 -92631927 - L1M2 LINE L1 -903 5240 4854 1 824 1001 227 15 0 chr9 31444285 31444488 -92631684 - B3 SINE B2 -10 206 1 1 824 290 299 23 23 chr9 31444664 31444794 -92631378 - L1M2 LINE L1 -1320 4823 4673 1 824 295 324 265 28 chr9 31444878 31445099 -92631073 - B4A SINE B4 -8 284 12 1 824 577 280 20 20 chr9 31445153 31445350 -92630822 + L1MA5 LINE L1 6101 6297 -3 1 824 1160 68 0 7 chr9 31445521 31445669 -92630503 + B1_Mus2 SINE Alu 1 147 0 1 824 399 54 0 51 chr9 31445669 31445747 -92630425 + (CAAAAA)n Simple_repeat Simple_repeat 5 78 0 1 824 541 278 181 25 chr9 31445772 31446214 -92629958 - L1M5 LINE L1 -2856 3290 2780 1 824 227 198 126 68 chr9 31446250 31446353 -92629819 - Lx7 LINE L1 -16 7680 7572 1 824 379 204 152 10 chr9 31446358 31446457 -92629715 + B3A SINE B2 1 113 -85 1 824 1145 210 32 12 chr9 31446461 31446712 -92629460 - Lx7 LINE L1 -525 7171 6916 1 824 25 31 0 0 chr9 31446715 31446747 -92629425 + AT_rich Low_complexity Low_complexity 1 32 0 1 824 302 295 90 6 chr9 31446991 31447158 -92629014 - L1MEc LINE L1 -3677 2642 2462 1 824 321 274 0 69 chr9 31447165 31447267 -92628905 - PB1D7 SINE Alu -6 114 20 1 824 383 295 69 39 chr9 31447285 31447518 -92628654 - L1MEc LINE L1 -3954 2446 2207 1 824 449 161 0 11 chr9 31447536 31447624 -92628548 + CT-rich Low_complexity Low_complexity 4 90 0 1 824 217 342 0 14 chr9 31447944 31448018 -92628154 + L2b LINE L2 3061 3133 -242 1 824 207 0 0 0 chr9 31448164 31448187 -92627985 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 824 606 294 7 7 chr9 31448378 31448522 -92627650 + RSINE1 SINE B4 2 145 -20 1 824 261 83 0 0 chr9 31448523 31448559 -92627613 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 824 497 110 12 0 chr9 31449754 31449836 -92626336 + (GA)n Simple_repeat Simple_repeat 1 83 0 1 824 352 320 98 37 chr9 31450007 31450302 -92625870 - MER33 DNA MER1_type -11 313 1 1 824 4282 269 98 43 chr9 31453304 31456037 -92620135 - L1MCa LINE L1 -556 5952 3071 1 824 294 301 165 90 chr9 31456201 31456613 -92619559 - L1MCa LINE L1 -6055 453 11 1 824 304 285 90 34 chr9 31456947 31457125 -92619047 - ORR1E LTR MaLR -168 191 4 1 825 865 240 59 0 chr9 31461463 31461667 -92614505 + B3 SINE B2 1 216 0 1 825 198 0 0 0 chr9 31461950 31461972 -92614200 + (T)n Simple_repeat Simple_repeat 1 22 0 1 825 310 291 51 8 chr9 31462549 31462667 -92613505 + LTR33B LTR ERVL 381 503 0 1 825 1395 261 71 16 chr9 31462833 31463285 -92612887 + RMER5 LTR ERV1 1 477 -57 1 825 317 374 14 7 chr9 31463698 31463846 -92612326 - L2b LINE L2 -17 3358 3210 1 825 530 67 13 0 chr9 31464289 31464364 -92611808 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 1 825 247 349 8 8 chr9 31464421 31464556 -92611616 - MIR SINE MIR -63 145 10 1 825 1011 215 5 10 chr9 31464835 31465037 -92611135 + B3 SINE B2 2 202 -14 1 825 351 0 0 0 chr9 31465037 31465076 -92611096 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 825 386 290 10 0 chr9 31466108 31466208 -92609964 + PB1 SINE Alu 21 121 -6 1 825 28 0 0 0 chr9 31466299 31466327 -92609845 + AT_rich Low_complexity Low_complexity 1 28 0 1 825 1289 271 80 25 chr9 31466636 31467121 -92609051 + MER99 DNA hAT? 192 703 -128 1 825 869 149 62 62 chr9 31467333 31467512 -92608660 - B2_Mm2 SINE B2 -15 180 2 1 825 233 29 29 0 chr9 31467639 31467673 -92608499 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 825 1064 173 137 0 chr9 31468043 31468314 -92607858 - RMER1B Other Other -20 1046 739 1 825 941 289 135 18 chr9 31468317 31468761 -92607411 + FordPrefect DNA Tip100 825 1320 -363 1 825 957 244 125 7 chr9 31468881 31469186 -92606986 - L1_Mur3 LINE L1 -114 5766 5426 1 825 1428 269 115 28 chr9 31469172 31469643 -92606529 + Lx8 LINE L1 6828 7339 -134 1 825 204 135 27 0 chr9 31469645 31469682 -92606490 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 825 441 221 9 9 chr9 31469952 31470066 -92606106 - MER5A1 DNA MER1_type 0 166 53 1 825 269 340 75 0 chr9 31470446 31470593 -92605579 + MLT1A0 LTR MaLR 7 164 -244 1 825 1230 258 87 26 chr9 31470594 31470973 -92605199 + Lx8 LINE L1 7034 7435 -38 1 825 495 0 0 0 chr9 31470973 31471028 -92605144 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 825 1104 88 0 33 chr9 31471061 31471213 -92604959 + B1_Mus1 SINE Alu 2 148 0 1 825 564 307 73 0 chr9 31471274 31471466 -92604706 + MLT1A0 LTR MaLR 157 362 -3 1 825 1076 276 38 16 chr9 31471709 31471984 -92604188 - L1MA4 LINE L1 -423 5877 5600 1 825 180 0 0 0 chr9 31471984 31472004 -92604168 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 825 1076 276 38 16 chr9 31472004 31472093 -92604079 - L1MA4 LINE L1 -701 5599 5506 1 825 7876 149 35 17 chr9 31472102 31472292 -92603880 - Lx3C LINE L1 -2 6974 6767 1 825 285 29 0 0 chr9 31472292 31472326 -92603846 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 825 18128 141 29 22 chr9 31472326 31474478 -92601694 - Lx3C LINE L1 -210 6766 4645 1 825 213 0 81 0 chr9 31474478 31474515 -92601657 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 825 18128 135 25 26 chr9 31474515 31476252 -92599920 - Lx3C LINE L1 -1242 4644 2888 1 825 741 53 0 0 chr9 31476252 31476346 -92599826 + (TCCC)n Simple_repeat Simple_repeat 4 97 0 1 825 18128 135 25 26 chr9 31476346 31476471 -92599701 - Lx3C LINE L1 -2999 2887 2752 1 825 2467 156 33 2 chr9 31476468 31476918 -92599254 - L1VL4 LINE L1 -5314 988 525 1 825 331 278 79 18 chr9 31477307 31477472 -92598700 - L1MA4 LINE L1 -787 5516 5342 1 825 776 262 25 0 chr9 31477530 31477732 -92598440 + ERVL-E-int LTR ERVL 2496 2702 -2965 1 825 321 100 0 0 chr9 31477758 31477808 -92598364 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 825 629 362 59 3 chr9 31477907 31478262 -92597910 + ERVL-E-int LTR ERVL 2876 3250 -2417 1 825 463 335 22 11 chr9 31478613 31478850 -92597322 + ERVL-E-int LTR ERVL 3638 3934 -1780 1 825 959 186 46 0 chr9 31478925 31479119 -92597053 - ORR1C2 LTR MaLR -8 376 174 1 825 252 235 0 0 chr9 31479126 31479241 -92596931 + GA-rich Low_complexity Low_complexity 4 118 0 1 825 223 174 0 0 chr9 31479242 31479288 -92596884 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 825 883 209 21 45 chr9 31479288 31479520 -92596652 - ORR1C2 LTR MaLR -144 223 3 1 825 217 214 24 0 chr9 31479862 31479904 -92596268 + (CGA)n Simple_repeat Simple_repeat 3 45 0 1 825 30 27 0 0 chr9 31480024 31480061 -92596111 + AT_rich Low_complexity Low_complexity 1 37 0 1 825 1250 257 104 16 chr9 31480176 31480551 -92595621 - MTD LTR MaLR -6 413 6 1 825 766 151 16 0 chr9 31480577 31480703 -92595469 + B1_Mur1 SINE Alu 1 128 -21 1 825 342 0 0 0 chr9 31480712 31480750 -92595422 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1 825 234 300 58 8 chr9 31480825 31480946 -92595226 + L1MC LINE L1 5103 5229 -917 1 825 1023 250 112 13 chr9 31480998 31481465 -92594707 + L1M5 LINE L1 5265 5776 -388 1 825 710 186 21 14 chr9 31481849 31481991 -92594181 + B1_Mur2 SINE Alu 1 143 -6 1 825 4715 202 40 19 chr9 31482134 31482921 -92593251 - L1_Mur3 LINE L1 -473 5407 4606 1 825 324 83 0 0 chr9 31482921 31482969 -92593203 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 825 4715 202 40 19 chr9 31482969 31483257 -92592915 - L1_Mur3 LINE L1 -1275 4605 4309 1 825 180 0 0 0 chr9 31483327 31483347 -92592825 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 825 239 345 35 0 chr9 31484174 31484287 -92591885 + L1M5 LINE L1 5558 5674 -566 1 825 790 286 161 10 chr9 31484428 31484831 -92591341 - Charlie1 DNA MER1_type -483 2298 1835 1 825 1832 240 41 30 chr9 31485135 31485648 -92590524 - RLTR20A LTR ERVK -6 522 1 1 825 831 231 110 12 chr9 31485648 31485880 -92590292 - RLTR20A LTR ERVK -269 259 4 1 825 234 0 0 0 chr9 31485972 31485998 -92590174 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 825 483 315 80 0 chr9 31487838 31488000 -92588172 + B4A SINE B4 95 269 -23 1 825 376 283 46 23 chr9 31488257 31488387 -92587785 - ORR1E LTR MaLR -224 135 3 1 825 303 293 63 55 chr9 31488904 31489096 -92587076 + MIRc SINE MIR 45 227 -41 1 825 213 39 0 0 chr9 31489735 31489761 -92586411 + (A)n Simple_repeat Simple_repeat 1 26 0 1 825 22 0 0 0 chr9 31491753 31491775 -92584397 + GC_rich Low_complexity Low_complexity 1 22 0 1 825 471 272 10 0 chr9 31492521 31492624 -92583548 + Lx8 LINE L1 7222 7325 -148 1 825 207 0 0 0 chr9 31492721 31492744 -92583428 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 825 300 307 30 30 chr9 31494071 31494202 -92581970 - MIRb SINE MIR -71 197 67 1 825 244 272 35 58 chr9 31496681 31496767 -92579405 - MIRc SINE MIR -72 196 110 1 825 1041 147 47 0 chr9 31499166 31499356 -92576816 - URR1A DNA MER1_type -2 224 26 1 825 1349 290 75 24 chr9 31499524 31499977 -92576195 + Lx7 LINE L1 6535 7010 -686 1 825 562 329 30 52 chr9 31500005 31500310 -92575862 + Lx7 LINE L1 7039 7336 -360 1 825 339 248 195 20 chr9 31500556 31500676 -92575496 - MTEb LTR MaLR -62 317 161 2 825 234 0 0 0 chr9 31500676 31500702 -92575470 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 825 339 219 379 23 chr9 31500702 31500814 -92575358 - MTEb LTR MaLR -219 160 13 2 825 439 303 75 38 chr9 31501171 31501411 -92574761 - L2 LINE L2 -443 2976 2728 4 825 656 43 11 0 chr9 31501437 31501529 -92574643 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 825 1439 279 78 5 chr9 31501612 31502037 -92574135 - Lx8 LINE L1 -526 6947 6492 6 825 1640 247 112 11 chr9 31502038 31502504 -92573668 + Lx8 LINE L1 6959 7471 -2 6 825 23 0 0 0 chr9 31502504 31502527 -92573645 + AT_rich Low_complexity Low_complexity 1 23 0 7 825 234 326 29 39 chr9 31502997 31503099 -92573073 + RSINE1 SINE B4 65 165 0 8 825 388 165 11 0 chr9 31503129 31503220 -92572952 + Lx9 LINE L1 7535 7626 -18 9 825 188 229 164 0 chr9 31503350 31503411 -92572761 - L2 LINE L2 -1521 1898 1828 4 825 1057 106 0 0 chr9 31503440 31503582 -92572590 + B1_Mus1 SINE Alu 1 142 -6 1 825 450 0 0 0 chr9 31503584 31503634 -92572538 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 825 288 0 0 0 chr9 31503634 31503665 -92572507 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 825 201 121 0 0 chr9 31506544 31506577 -92569595 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 1 825 252 0 0 0 chr9 31506717 31506745 -92569427 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 825 794 273 34 11 chr9 31506789 31507111 -92569061 - L1MA4 LINE L1 -1029 5979 5677 1 825 383 193 146 9 chr9 31507326 31507436 -92568736 - L1MA4 LINE L1 -394 5489 5365 1 825 773 247 105 16 chr9 31507986 31508233 -92567939 + L1MB8 LINE L1 5904 6172 -6 1 825 1281 252 50 14 chr9 31508560 31508918 -92567254 + MTE2b LTR MaLR 1 371 -8 1 825 214 237 77 26 chr9 31509133 31509211 -92566961 + MIRb SINE MIR 109 190 -78 1 825 531 331 0 0 chr9 31509262 31509395 -92566777 + B1F SINE Alu 6 138 -11 1 825 780 111 0 0 chr9 31509395 31509512 -92566660 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 2 825 776 277 120 24 chr9 31509512 31509845 -92566327 + Lx7 LINE L1 6942 7306 -390 2 825 629 220 94 12 chr9 31510031 31510254 -92565918 + MTD LTR MaLR 2 246 -161 2 825 774 207 15 75 chr9 31510530 31510729 -92565443 + MTD LTR MaLR 231 417 -2 2 825 481 200 66 44 chr9 31510737 31510873 -92565299 + MTD-int LTR MaLR 7 145 -1113 2 825 1871 197 10 5 chr9 31510883 31511270 -92564902 - MTD LTR MaLR -30 389 1 2 825 3432 194 197 77 chr9 31511272 31512393 -92563779 - MTD-int LTR MaLR -2 1256 1 2 825 1689 186 120 3 chr9 31512398 31512765 -92563407 - MTD LTR MaLR -9 410 1 2 825 3657 236 58 48 chr9 31512765 31513877 -92562295 + MTD-int LTR MaLR 136 1258 0 2 825 1998 194 22 8 chr9 31513878 31514279 -92561893 + MTD LTR MaLR 2 408 -11 2 825 282 225 4 8 chr9 31516654 31516746 -92559426 - ID4 SINE ID -36 116 26 2 825 271 230 25 75 chr9 31516821 31516901 -92559271 - PB1D10 SINE Alu -41 76 1 2 825 339 85 0 0 chr9 31517226 31517273 -92558899 + (GGA)n Simple_repeat Simple_repeat 2 48 0 2 825 201 158 0 0 chr9 31517911 31517949 -92558223 + A-rich Low_complexity Low_complexity 1 38 0 2 825 237 296 157 0 chr9 31518538 31518690 -92557482 - MIR SINE MIR -54 214 45 2 825 46 19 0 0 chr9 31518863 31518916 -92557256 + AT_rich Low_complexity Low_complexity 1 53 0 2 825 657 302 67 0 chr9 31519557 31519782 -92556390 - MIRb SINE MIR -6 262 23 3 825 303 175 0 0 chr9 31520011 31520068 -92556104 + GA-rich Low_complexity Low_complexity 2 58 0 3 825 223 149 0 60 chr9 31520088 31520138 -92556034 + MIR SINE MIR 108 154 -108 3 825 22 70 0 0 chr9 31521035 31521078 -92555094 + AT_rich Low_complexity Low_complexity 1 43 0 3 825 285 261 0 0 chr9 31521235 31521304 -92554868 + MER44D DNA MER2_type 48 116 -589 3 825 1038 105 70 32 chr9 31521452 31521639 -92554533 + B2_Mm2 SINE B2 2 195 0 3 825 1433 75 37 0 chr9 31522463 31522650 -92553522 - B2_Mm2 SINE B2 0 195 2 3 825 499 227 66 107 chr9 31522752 31522949 -92553223 + B3A SINE B2 2 198 0 3 825 426 284 194 16 chr9 31524064 31524383 -92551789 + L1MB3 LINE L1 5807 6182 -1 3 825 793 217 84 20 chr9 31525217 31525419 -92550753 + B3 SINE B2 2 216 0 3 825 829 312 124 17 chr9 31525515 31525997 -92550175 + L1MB7 LINE L1 5619 6152 -32 4 825 255 182 57 57 chr9 31526641 31526711 -92549461 + MER103 DNA DNA 25 94 -72 4 825 356 0 23 0 chr9 31526735 31526779 -92549393 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 825 543 302 181 3 chr9 31527107 31527413 -92548759 - MLT1A0 LTR MaLR 0 365 5 4 825 687 306 41 0 chr9 31527690 31527886 -92548286 - B3 SINE B2 -6 210 7 4 825 487 296 192 33 chr9 31530995 31531386 -92544786 - L1MC4 LINE L1 -235 7807 7355 4 825 871 284 170 21 chr9 31531597 31532032 -92544140 - L1MC4 LINE L1 -1033 7009 6510 4 825 210 179 0 0 chr9 31532267 31532323 -92543849 + (TCTG)n Simple_repeat Simple_repeat 2 57 0 4 825 297 0 0 0 chr9 31532324 31532357 -92543815 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 825 364 314 33 47 chr9 31532854 31533065 -92543107 - L1MEg LINE L1 -4851 2699 2492 4 825 318 67 0 0 chr9 31533221 31533266 -92542906 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 825 1218 236 116 14 chr9 31533285 31533629 -92542543 + MTD LTR MaLR 41 419 0 5 825 352 317 113 19 chr9 31533679 31533891 -92542281 - L1MEg LINE L1 -5466 986 755 4 825 455 331 49 0 chr9 31534323 31534486 -92541686 - MTE-int LTR MaLR -27 1553 1383 5 825 476 246 140 74 chr9 31534617 31534902 -92541270 + RMER15 LTR ERVL 272 575 0 5 825 1508 329 54 19 chr9 31534902 31535532 -92540640 - MTE-int LTR MaLR -187 1393 742 5 825 394 290 130 0 chr9 31535694 31535856 -92540316 - Lx8 LINE L1 -10 7463 7281 5 825 1009 320 39 33 chr9 31535877 31536368 -92539804 - MTE-int LTR MaLR -1070 510 17 5 825 1222 181 9 47 chr9 31536425 31536657 -92539515 - URR1B DNA MER1_type 0 225 3 5 825 321 294 22 0 chr9 31537148 31537240 -92538932 + RSINE1 SINE B4 3 96 -69 5 825 200 194 0 0 chr9 31537455 31537491 -92538681 + CT-rich Low_complexity Low_complexity 4 39 0 5 825 213 330 19 48 chr9 31537502 31537607 -92538565 + MIRc SINE MIR 42 143 -125 5 825 342 304 0 26 chr9 31538505 31538620 -92537552 - MLT1B LTR MaLR -6 384 273 5 825 259 255 91 112 chr9 31538802 31539098 -92537074 + B4A SINE B4 3 292 0 5 825 438 153 0 0 chr9 31539113 31539224 -92536948 + (CAGAGA)n Simple_repeat Simple_repeat 2 112 0 6 825 241 233 107 27 chr9 31539241 31539316 -92536856 - L1MC1 LINE L1 -31 6302 6222 6 825 499 244 248 3 chr9 31539749 31540040 -92536132 + MTD LTR MaLR 46 407 -12 6 825 207 0 0 0 chr9 31540054 31540077 -92536095 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 825 254 119 0 0 chr9 31540545 31540587 -92535585 - RLTR31_Mur LTR ERVK 0 553 512 6 825 1151 173 59 8 chr9 31540584 31540823 -92535349 - RLTR17 LTR ERVK -87 605 355 6 825 2714 97 140 11 chr9 31540824 31541295 -92534877 + RLTR47_MM LTR ERV1 1 532 0 6 825 537 16 0 0 chr9 31541926 31541988 -92534184 + (GAA)n Simple_repeat Simple_repeat 2 63 0 6 825 277 356 17 17 chr9 31541999 31542176 -92533996 + MuRRS4-int LTR ERV1 582 758 -6843 6 825 776 302 39 0 chr9 31542258 31542513 -92533659 + MuRRS4-int LTR ERV1 1306 1570 -3493 6 825 38847 11 0 8 chr9 31542525 31547712 -92528460 + L1Md_A LINE L1 443 5586 -297 6 825 9007 14 0 0 chr9 31547712 31548756 -92527416 + L1Md_A LINE L1 5587 6582 0 6 825 359 331 47 43 chr9 31549005 31549283 -92526889 + MuRRS4-int LTR ERV1 2114 2392 -5209 6 825 1917 303 75 74 chr9 31549356 31550943 -92525229 + MuRRS4-int LTR ERV1 2744 4332 -731 6 825 774 308 53 35 chr9 31551202 31551624 -92524548 + RLTR6-int LTR ERV1 6988 7727 -51 7 825 2747 76 154 2 chr9 31551710 31552170 -92524002 + RLTR47_MM LTR ERV1 3 532 0 7 825 1108 225 93 24 chr9 31552172 31552505 -92523667 - RLTR17 LTR ERVK -336 356 1 7 825 613 260 83 30 chr9 31552509 31552739 -92523433 + Lx7 LINE L1 7127 7368 -328 7 825 285 250 116 8 chr9 31552723 31552844 -92523328 + Lx7 LINE L1 7563 7696 0 7 825 1223 271 72 20 chr9 31553280 31553724 -92522448 - RMER5 LTR ERV1 -19 515 49 7 825 848 294 34 144 chr9 31554027 31554114 -92522058 - B4A SINE B4 -2 290 218 7 825 742 235 87 0 chr9 31554114 31554310 -92521862 - B3 SINE B2 -3 213 1 7 825 848 294 34 144 chr9 31554310 31554473 -92521699 - B4A SINE B4 -75 217 79 7 825 216 0 0 0 chr9 31554473 31554497 -92521675 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 825 848 294 34 144 chr9 31554497 31554571 -92521601 - B4A SINE B4 -214 78 1 7 825 280 94 0 36 chr9 31554582 31554637 -92521535 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 825 201 224 0 0 chr9 31555357 31555415 -92520757 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 825 2930 282 103 53 chr9 31555461 31556679 -92519493 - Lx9 LINE L1 -206 7438 6161 8 825 1544 226 23 5 chr9 31556708 31557071 -92519101 - Lx9 LINE L1 -1699 5945 5540 8 825 345 275 0 0 chr9 31557444 31557513 -92518659 + ID SINE ID 4 72 -152 8 825 212 125 50 0 chr9 31557515 31557555 -92518617 + (TCTCTG)n Simple_repeat Simple_repeat 1 42 0 8 825 1132 263 62 18 chr9 31557557 31557832 -92518340 - B4A SINE B4 -3 289 3 8 825 316 274 51 43 chr9 31558398 31558528 -92517644 + MIR3 SINE MIR 70 196 -12 8 825 9702 105 23 9 chr9 31559133 31561300 -92514872 + Lx4A LINE L1 4842 7050 -8 8 825 180 0 0 0 chr9 31561300 31561320 -92514852 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 8 825 609 86 0 0 chr9 31561876 31561969 -92514203 + (TC)n Simple_repeat Simple_repeat 2 94 0 8 825 364 306 73 34 chr9 31562175 31562354 -92513818 + ORR1E LTR MaLR 10 195 -164 8 825 198 0 0 0 chr9 31562362 31562384 -92513788 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 8 825 619 236 149 27 chr9 31562410 31562632 -92513540 + B4A SINE B4 44 292 0 9 825 372 208 0 0 chr9 31562634 31562730 -92513442 + (CA)n Simple_repeat Simple_repeat 1 96 0 9 825 227 79 26 0 chr9 31562733 31562771 -92513401 + (GGGAGA)n Simple_repeat Simple_repeat 3 41 0 9 825 338 223 31 31 chr9 31562883 31562980 -92513192 + ORR1E LTR MaLR 283 379 0 8 825 4054 292 102 34 chr9 31563043 31564470 -92511702 + ORR1E-int LTR MaLR 1 1524 -56 8 825 462 340 132 17 chr9 31564482 31564769 -92511403 + ORR1E LTR MaLR 12 331 -28 9 825 201 370 25 0 chr9 31566799 31566880 -92509292 + MIRb SINE MIR 3 85 -183 9 825 251 254 32 0 chr9 31566977 31567040 -92509132 + ID4 SINE ID 3 67 -16 9 825 273 57 0 0 chr9 31567055 31567090 -92509082 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 9 825 319 280 53 0 chr9 31567116 31567191 -92508981 + PB1D7 SINE Alu 42 120 0 9 825 769 222 124 58 chr9 31567195 31567453 -92508719 + MER2 DNA MER2_type 63 337 -8 9 825 228 302 0 100 chr9 31567398 31567468 -92508704 - MER2 DNA MER2_type -10 335 273 9 825 640 275 14 0 chr9 31567892 31568034 -92508138 + B3A SINE B2 2 145 -53 1 825 433 368 26 21 chr9 31568826 31569015 -92507157 + MIRb SINE MIR 33 222 -46 1 825 194 256 0 0 chr9 31569029 31569072 -92507100 + MIRc SINE MIR 102 144 -124 1 825 1129 184 91 15 chr9 31569125 31569324 -92506848 + B3 SINE B2 3 216 0 1 825 308 302 82 10 chr9 31569588 31569685 -92506487 + B3 SINE B2 81 184 -32 1 825 294 29 0 0 chr9 31569689 31569724 -92506448 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 825 221 119 24 0 chr9 31569729 31569771 -92506401 + (TATG)n Simple_repeat Simple_repeat 4 46 0 1 825 279 280 30 113 chr9 31569959 31570092 -92506080 - L1MC5 LINE L1 -838 7123 7002 1 825 294 263 40 0 chr9 31570246 31570322 -92505850 - L1MC5 LINE L1 -1147 6814 6736 1 825 427 193 12 12 chr9 31571153 31571237 -92504935 - B1_Mur1 SINE Alu -1 148 65 1 825 586 282 94 0 chr9 31571316 31571465 -92504707 + RSINE1 SINE B4 1 163 -2 1 825 569 256 8 0 chr9 31571546 31571663 -92504509 + PB1D9 SINE Alu 3 120 0 1 825 257 256 92 75 chr9 31571724 31571806 -92504366 + L1MD1 LINE L1 5104 5188 -958 1 825 198 0 0 0 chr9 31571806 31571828 -92504344 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 825 717 173 93 43 chr9 31571838 31571977 -92504195 + B1_Mus2 SINE Alu 1 146 -1 1 825 257 256 92 75 chr9 31571977 31572012 -92504160 + L1MD1 LINE L1 5198 5228 -918 1 825 366 42 0 0 chr9 31572012 31572060 -92504112 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 825 432 0 0 0 chr9 31572060 31572107 -92504065 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 825 435 272 145 70 chr9 31572107 31572568 -92503604 + L1MD1 LINE L1 5229 5773 -469 1 825 438 316 96 21 chr9 31572571 31572810 -92503362 + L1MD1 LINE L1 5957 6213 -29 1 825 335 310 0 11 chr9 31572841 31572929 -92503243 + PB1 SINE Alu 24 110 -17 1 825 525 71 0 0 chr9 31572935 31573005 -92503167 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 1 825 387 277 253 11 chr9 31573092 31573278 -92502894 - MIRb SINE MIR -13 255 25 1 825 396 316 134 78 chr9 31573587 31573893 -92502279 - MER2 DNA MER2_type -22 323 1 9 825 488 293 28 21 chr9 31574259 31574402 -92501770 - RSINE1 SINE B4 -18 147 4 1 825 484 222 101 9 chr9 31574418 31574527 -92501645 - PB1D7 SINE Alu 0 120 2 1 825 307 270 143 9 chr9 31574535 31574647 -92501525 + MIRb SINE MIR 52 178 -90 1 825 248 287 58 39 chr9 31574726 31574882 -92501290 + L1M5 LINE L1 5027 5185 -961 1 825 528 225 0 4 chr9 31574908 31575143 -92501029 + (CA)n Simple_repeat Simple_repeat 1 233 0 1 825 749 178 0 11 chr9 31575155 31575337 -92500835 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 825 491 0 17 0 chr9 31575388 31575447 -92500725 + (TCC)n Simple_repeat Simple_repeat 2 61 0 1 825 836 29 9 0 chr9 31575454 31575559 -92500613 - B1_Mus2 SINE Alu 0 147 42 1 825 288 148 112 56 chr9 31575496 31575603 -92500569 - RLTR25B LTR ERVK -519 509 397 1 825 234 0 0 158 chr9 31575604 31575718 -92500454 + (CTCTG)n Simple_repeat Simple_repeat 5 100 0 1 825 396 102 0 33 chr9 31575719 31575780 -92500392 - B1_Mus1 SINE Alu -88 60 2 1 825 1032 111 0 0 chr9 31576580 31576751 -92499421 + (TTGG)n Simple_repeat Simple_repeat 1 171 0 1 825 305 329 70 29 chr9 31576834 31576973 -92499199 - L1M5 LINE L1 -3541 2605 2458 1 825 1020 224 28 37 chr9 31576973 31577191 -92498981 - B3 SINE B2 0 216 1 1 825 305 329 70 29 chr9 31577191 31577223 -92498949 - L1M5 LINE L1 -3689 2457 2427 1 825 225 300 112 6 chr9 31577252 31577413 -92498759 - L1MEc LINE L1 -3793 2526 2349 1 825 411 290 137 24 chr9 31577715 31577927 -92498245 - L1MEc LINE L1 -4260 2140 1905 1 825 1182 111 0 0 chr9 31578163 31578278 -92497894 + (TC)n Simple_repeat Simple_repeat 2 116 0 1 825 914 78 0 53 chr9 31578278 31578468 -92497704 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 825 1182 111 0 0 chr9 31578468 31578532 -92497640 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 825 329 89 0 51 chr9 31578533 31578592 -92497580 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 1 825 558 68 104 12 chr9 31578592 31578755 -92497417 + CT-rich Low_complexity Low_complexity 2 179 0 1 825 873 67 0 67 chr9 31578721 31578914 -92497258 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 825 935 142 6 0 chr9 31578905 31579067 -92497105 + (TC)n Simple_repeat Simple_repeat 1 163 0 1 825 751 70 0 65 chr9 31579040 31579209 -92496963 + (TTCC)n Simple_repeat Simple_repeat 2 159 0 1 825 568 176 62 0 chr9 31579215 31579654 -92496518 + CT-rich Low_complexity Low_complexity 1 465 0 1 825 784 88 11 50 chr9 31579668 31579848 -92496324 + (TTTTC)n Simple_repeat Simple_repeat 5 177 0 1 825 1319 39 0 40 chr9 31579849 31580220 -92495952 + (TTTC)n Simple_repeat Simple_repeat 1 356 0 1 825 198 0 0 0 chr9 31580220 31580242 -92495930 + (TTCC)n Simple_repeat Simple_repeat 4 25 0 1 825 334 193 132 62 chr9 31580242 31580386 -92495786 - L1MEc LINE L1 -5191 1209 1056 1 825 2290 99 17 64 chr9 31580443 31580788 -92495384 - ORR1A4 LTR MaLR 0 329 1 1 825 198 191 0 0 chr9 31580839 31580881 -92495291 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 825 230 217 0 0 chr9 31580887 31580933 -92495239 - U2 snRNA snRNA -142 46 1 1 825 405 330 114 4 chr9 31580986 31581223 -92494949 - L1MEc LINE L1 -5543 857 595 1 825 554 299 98 54 chr9 31581270 31581676 -92494496 - L1MEc LINE L1 -5933 467 44 1 825 258 343 14 21 chr9 31581726 31581866 -92494306 - ERVL-E-int LTR ERVL -4208 1459 1321 1 825 294 326 111 35 chr9 31582078 31582393 -92493779 - ERVL-E-int LTR ERVL -4584 1083 745 1 825 349 274 85 43 chr9 31583115 31583256 -92492916 - MLT1N2 LTR MaLR -7 555 409 1 825 1383 166 170 38 chr9 31585326 31585436 -92490736 + L1_Rod LINE L1 1147 1274 -6334 1 825 762 194 65 0 chr9 31585436 31585575 -92490597 + B1_Mur4 SINE Alu 2 149 -1 1 825 1383 162 165 66 chr9 31585575 31585960 -92490212 + L1_Rod LINE L1 1275 1692 -4155 1 825 5686 49 7 0 chr9 31585959 31586653 -92489519 + L1_Mus1 LINE L1 5635 6333 -234 1 825 2289 23 4 0 chr9 31586652 31586914 -92489258 + L1Md_A LINE L1 5323 5585 -298 1 825 8950 29 9 0 chr9 31586915 31587902 -92488270 + L1Md_A LINE L1 5587 6582 0 1 825 2034 74 0 0 chr9 31587897 31588185 -92487987 + L1_Mus1 LINE L1 6317 6567 0 1 103 4619 153 26 52 chr9 31588187 31588445 -92487727 + L1_Rod LINE L1 1682 1938 -3909 1 826 2210 79 130 0 chr9 31588445 31588761 -92487411 + L1_Mus3 LINE L1 6278 6634 -4 1 826 4619 153 26 52 chr9 31588761 31589048 -92487124 + L1_Rod LINE L1 1939 2241 -3606 1 826 929 201 0 0 chr9 31589048 31589197 -92486975 + B1_Mur4 SINE Alu 2 150 0 1 826 4619 153 26 52 chr9 31589197 31589210 -92486962 + L1_Rod LINE L1 2242 2252 -3595 1 826 531 0 0 0 chr9 31589210 31589269 -92486903 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 826 4619 153 26 52 chr9 31589269 31589410 -92486762 + L1_Rod LINE L1 2253 2385 -3462 1 826 2622 69 3 0 chr9 31589410 31589728 -92486444 - L1_Mus2 LINE L1 0 6566 6248 1 826 4619 153 26 52 chr9 31589728 31589845 -92486327 + L1_Rod LINE L1 2386 2495 -3352 1 826 3642 33 2 0 chr9 31589845 31590240 -92485932 - MTA_Mm LTR MaLR 0 396 1 1 826 4619 153 26 52 chr9 31590240 31590361 -92485811 + L1_Rod LINE L1 2496 2598 -3249 1 826 303 225 30 48 chr9 31590347 31590454 -92485718 + L1_Rod LINE L1 3576 3697 -2449 1 826 317 175 16 0 chr9 31591356 31591419 -92484753 + L1M2 LINE L1 3678 3741 -2402 1 826 1679 213 85 8 chr9 31591626 31591990 -92484182 + RMER1B Other Other 46 437 -629 1 826 1600 197 122 6 chr9 31591987 31592340 -92483832 + RMER1B Other Other 640 1033 -33 1 826 417 96 349 0 chr9 31592401 31592484 -92483688 + RMER6B LTR ERVK 1 112 -349 1 826 757 235 136 49 chr9 31592512 31592776 -92483396 - RLTR19B LTR ERVK 0 715 429 1 826 932 194 10 30 chr9 31592748 31592950 -92483222 + RMER6B LTR ERVK 264 461 0 1 826 4516 137 38 18 chr9 31592977 31593718 -92482454 - RMER6A LTR ERVK 0 756 1 1 826 3398 143 48 3 chr9 31593719 31594296 -92481876 - RMER6-int LTR ERVK -2 3175 2573 1 826 243 125 108 15 chr9 31594303 31594368 -92481804 + L1_Rod LINE L1 5234 5304 -543 1 826 1402 183 0 17 chr9 31594394 31594633 -92481539 + Lx9 LINE L1 6426 6660 -984 1 826 3102 195 32 19 chr9 31594645 31595268 -92480904 + Lx9 LINE L1 6738 7368 -276 1 826 340 139 231 77 chr9 31595273 31595390 -92480782 + Lx9 LINE L1 7505 7639 -5 1 826 626 220 56 25 chr9 31595415 31595611 -92480561 + L1_Mur3 LINE L1 3639 3840 -2040 1 826 189 0 0 0 chr9 31595611 31595632 -92480540 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 826 416 67 17 0 chr9 31595631 31595691 -92480481 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 826 900 241 32 58 chr9 31596289 31596632 -92479540 + RLTR15 LTR ERVK 1 334 -25 1 826 348 211 28 14 chr9 31596781 31596853 -92479319 - ID4 SINE ID -6 77 5 1 826 240 309 123 53 chr9 31597054 31597223 -92478949 + ORR1D2 LTR MaLR 20 200 -170 1 826 647 290 23 70 chr9 31597223 31597523 -92478649 + RLTR15 LTR ERVK 1 286 -73 1 826 28 0 0 0 chr9 31597638 31597666 -92478506 + AT_rich Low_complexity Low_complexity 1 28 0 1 826 670 179 0 24 chr9 31597985 31598111 -92478061 + B1_Mur4 SINE Alu 27 149 -1 1 826 905 229 96 5 chr9 31598255 31598453 -92477719 - B3 SINE B2 0 216 1 1 826 2993 191 26 18 chr9 31598697 31599267 -92476905 + Lx6 LINE L1 6412 6986 -474 1 826 1170 182 149 4 chr9 31599268 31599418 -92476754 + Lx7 LINE L1 7374 7549 -147 1 826 207 100 0 0 chr9 31599418 31599448 -92476724 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1 826 1170 182 149 4 chr9 31599448 31599578 -92476594 + Lx7 LINE L1 7550 7694 -2 1 826 396 295 9 9 chr9 31599625 31599731 -92476441 - PB1D10 SINE Alu -9 108 3 1 826 791 297 4 43 chr9 31600438 31600670 -92475502 + ID_B1 SINE B4 2 224 0 1 826 2530 153 21 0 chr9 31600772 31601144 -92475028 + RLTR14 LTR ERV1 3 382 0 1 826 314 254 15 0 chr9 31601716 31601783 -92474389 + ID4 SINE ID 16 83 0 1 826 3249 75 0 20 chr9 31602091 31602528 -92473644 + L1_Mus1 LINE L1 6161 6567 0 1 826 241 299 13 87 chr9 31602800 31602950 -92473222 - L2c LINE L2 -3 3384 3246 1 826 290 378 63 48 chr9 31603000 31603331 -92472841 - L2c LINE L2 -361 3058 2723 1 826 201 74 0 0 chr9 31604310 31604337 -92471835 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 826 658 279 158 24 chr9 31604353 31604776 -92471396 + L1MC LINE L1 4567 5046 -1100 1 826 3401 104 4 2 chr9 31605271 31605732 -92470440 - L1_Mus4 LINE L1 -18 6618 6157 1 826 4168 84 12 0 chr9 31605732 31606354 -92469818 + L1_Mus4 LINE L1 5512 6140 -496 1 826 283 395 65 19 chr9 31607708 31607753 -92468419 - RSINE1 SINE B4 -1 164 3 1 826 574 180 42 0 chr9 31607753 31607863 -92468309 - B3 SINE B2 -70 125 2 1 826 477 0 0 0 chr9 31607911 31607964 -92468208 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 826 21 0 0 0 chr9 31608322 31608343 -92467829 + AT_rich Low_complexity Low_complexity 1 21 0 1 826 529 193 100 9 chr9 31608489 31608599 -92467573 + RSINE1 SINE B4 2 121 -44 1 826 550 113 0 20 chr9 31608600 31608699 -92467473 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 826 528 278 157 10 chr9 31608705 31609135 -92467037 + L1_Mur3 LINE L1 1515 2004 -3873 1 826 2493 294 57 19 chr9 31609165 31610118 -92466054 + L1_Mur3 LINE L1 3650 4638 -1242 1 826 180 0 0 0 chr9 31610141 31610161 -92466011 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1 826 1192 225 111 26 chr9 31610161 31610504 -92465668 - MTD LTR MaLR -30 389 18 1 826 367 194 26 0 chr9 31610515 31610604 -92465568 + L1_Mur3 LINE L1 4636 4748 -1395 1 826 567 253 119 25 chr9 31610833 31611068 -92465104 + RMER15 LTR ERVL 319 575 0 1 826 392 317 159 35 chr9 31611070 31611330 -92464842 + L1_Mur3 LINE L1 4751 5020 -1123 1 826 3149 96 16 18 chr9 31611330 31611766 -92464406 + L1_Mus4 LINE L1 6202 6636 0 1 826 198 103 0 0 chr9 31611775 31611804 -92464368 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 2 826 592 294 63 91 chr9 31611819 31612081 -92464091 + L1_Mur3 LINE L1 5062 5399 -901 1 826 261 0 0 0 chr9 31612081 31612110 -92464062 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 826 675 260 45 25 chr9 31612110 31612363 -92463809 + L1_Mur3 LINE L1 5331 5622 -678 1 826 265 180 0 0 chr9 31612366 31612416 -92463756 - MTD LTR MaLR -367 52 3 2 826 3730 92 33 101 chr9 31612516 31613067 -92463105 - RMER17D2 LTR ERVK 0 809 330 2 826 1484 22 0 6 chr9 31613067 31613248 -92462924 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 2 826 3730 92 33 101 chr9 31613248 31613485 -92462687 - RMER17D2 LTR ERVK -480 329 75 2 826 617 306 73 0 chr9 31613500 31613814 -92462358 + L1MC1 LINE L1 5743 6079 -254 2 826 328 227 10 67 chr9 31615458 31615562 -92460610 + L1ME1 LINE L1 23 120 -6280 2 826 430 301 83 12 chr9 31615980 31616148 -92460024 + L1ME1 LINE L1 210 389 -6011 2 826 666 302 108 19 chr9 31616341 31616665 -92459507 - ORR1E LTR MaLR 0 359 7 2 826 2757 307 138 25 chr9 31616646 31617036 -92459136 - ORR1E-int LTR MaLR -28 1552 1119 2 826 453 50 0 0 chr9 31617036 31617096 -92459076 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 826 2757 307 138 25 chr9 31617096 31618100 -92458072 - ORR1E-int LTR MaLR -462 1118 1 2 826 494 264 77 49 chr9 31618313 31618496 -92457676 - ORR1E LTR MaLR -168 191 4 2 826 331 149 27 0 chr9 31618599 31618673 -92457499 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 826 821 309 51 15 chr9 31619001 31619274 -92456898 - B4A SINE B4 -1 291 9 2 826 633 283 153 43 chr9 31619321 31619987 -92456185 + L1ME1 LINE L1 4863 5596 -756 2 826 2040 102 13 3 chr9 31619989 31620303 -92455869 - L1_Mus3 LINE L1 -7 6631 6315 2 826 3675 243 88 57 chr9 31620362 31620576 -92455596 - Lx7 LINE L1 -805 6891 6672 2 826 5768 36 1 0 chr9 31620576 31621251 -92454921 + L1Md_A LINE L1 5906 6581 -1 2 826 3675 243 88 57 chr9 31621251 31622193 -92453979 - Lx7 LINE L1 -1025 6671 5699 2 826 378 250 43 11 chr9 31622191 31622284 -92453888 + Lx7 LINE L1 6946 7041 -655 2 826 33100 91 44 10 chr9 31622278 31624678 -92451494 + Lx3A LINE L1 209 2728 -3158 2 826 3080 77 12 2 chr9 31624678 31625095 -92451077 + BGLII LTR ERVK 1 421 0 2 826 33100 80 25 16 chr9 31625095 31629321 -92446851 + Lx3A LINE L1 2729 6966 -15 2 826 423 56 0 0 chr9 31629321 31629375 -92446797 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 2 826 9274 97 28 27 chr9 31629375 31629391 -92446781 + Lx3A LINE L1 6967 6981 0 2 826 563 284 186 33 chr9 31629383 31629678 -92446494 + Lx7 LINE L1 6999 7343 -353 2 826 384 22 0 0 chr9 31629678 31629723 -92446449 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 826 563 284 186 33 chr9 31629723 31629788 -92446384 + Lx7 LINE L1 7344 7413 -283 2 826 646 237 7 0 chr9 31629948 31630087 -92446085 + B1_Mur1 SINE Alu 3 142 -7 2 826 1963 254 80 28 chr9 31630089 31630813 -92445359 + L1ME1 LINE L1 5590 6351 -1 2 826 6669 218 42 15 chr9 31631437 31632500 -92443672 + Lx6 LINE L1 5664 6733 -727 2 826 618 49 0 0 chr9 31632500 31632582 -92443590 + (GA)n Simple_repeat Simple_repeat 2 83 0 2 826 6669 218 42 15 chr9 31632582 31632972 -92443200 + Lx6 LINE L1 6734 7139 -321 2 826 270 308 47 27 chr9 31633375 31633525 -92442647 - L1MC5 LINE L1 -541 7420 7268 2 826 445 305 71 101 chr9 31633738 31634176 -92441996 - L1MC5 LINE L1 -905 7056 6632 2 826 22 70 0 0 chr9 31635326 31635369 -92440803 + AT_rich Low_complexity Low_complexity 1 43 0 2 826 690 297 30 4 chr9 31635516 31635749 -92440423 + Lx9 LINE L1 7225 7463 -181 2 826 2429 153 12 2 chr9 31635800 31636207 -92439965 + MTC LTR MaLR 11 421 0 2 826 456 168 31 112 chr9 31636207 31636368 -92439804 + Lx9 LINE L1 7497 7644 0 2 826 294 263 52 2 chr9 31636394 31636527 -92439645 + L1MA4 LINE L1 2336 2499 -4080 2 826 4819 40 3 2 chr9 31636534 31637104 -92439068 - L1Md_F2 LINE L1 -12 6570 6000 2 826 3485 18 10 0 chr9 31637124 31637524 -92438648 + L1Md_F2 LINE L1 5587 5990 -592 2 826 307 329 68 7 chr9 31637727 31637874 -92438298 + L1MA4 LINE L1 2866 3021 -3824 2 826 1596 145 55 68 chr9 31637878 31638203 -92437969 - ORR1A4 LTR MaLR -8 321 1 2 826 798 190 0 7 chr9 31638329 31638472 -92437700 + B1_Mus2 SINE Alu 5 146 -1 2 826 281 267 83 11 chr9 31638608 31638757 -92437415 + L1MA4 LINE L1 3237 3397 -3185 2 826 267 368 17 9 chr9 31638936 31639051 -92437121 + B4A SINE B4 3 118 -174 2 826 482 255 72 42 chr9 31639600 31639879 -92436293 + L1MA4 LINE L1 3657 3937 -2908 2 826 1453 289 102 17 chr9 31639889 31640824 -92435348 + L1MA4 LINE L1 5185 6189 -669 2 826 1465 102 13 4 chr9 31640838 31641064 -92435108 - Lx LINE L1 -2 6652 6425 2 826 1705 78 0 0 chr9 31641064 31641282 -92434890 + Lx LINE L1 6237 6454 -200 2 826 213 39 0 0 chr9 31641497 31641523 -92434649 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 826 2513 301 67 29 chr9 31641524 31642524 -92433648 + Lx9 LINE L1 6342 7379 -265 2 826 382 181 11 63 chr9 31642665 31642854 -92433318 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 826 3621 80 0 8 chr9 31643015 31643496 -92432676 - L1_Mus4 LINE L1 -3 6633 6157 2 826 1508 98 0 5 chr9 31643510 31643714 -92432458 + L1_Mm LINE L1 5540 5742 -141 2 826 544 309 57 5 chr9 31643740 31643932 -92432240 + ID_B1 SINE B4 4 205 -19 2 826 917 200 27 0 chr9 31643977 31644162 -92432010 + B3 SINE B2 23 212 -4 2 826 317 218 160 18 chr9 31644194 31644318 -92431854 + L1MA4 LINE L1 6179 6312 -564 2 826 1377 229 113 3 chr9 31644374 31644738 -92431434 - MTD LTR MaLR -14 405 2 2 826 328 266 32 96 chr9 31644771 31644896 -92431276 + B3 SINE B2 85 201 -15 2 826 601 293 46 51 chr9 31645002 31645449 -92430723 + L1MA4 LINE L1 6381 6819 -39 2 826 186 43 0 0 chr9 31648799 31648822 -92427350 + (CAA)n Simple_repeat Simple_repeat 1 23 0 2 826 1248 268 62 60 chr9 31650557 31650899 -92425273 + L1MA8 LINE L1 5675 6028 -263 2 826 838 163 238 0 chr9 31650899 31651071 -92425101 + B3 SINE B2 1 213 -3 2 826 1248 268 62 60 chr9 31651071 31651096 -92425076 + L1MA8 LINE L1 6029 6045 -246 2 826 2934 104 7 16 chr9 31651096 31651537 -92424635 + L1_Mus3 LINE L1 6197 6633 -5 2 826 1248 268 62 60 chr9 31651537 31651783 -92424389 + L1MA8 LINE L1 6046 6290 -1 2 826 306 0 0 0 chr9 31652138 31652172 -92424000 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 826 608 276 28 0 chr9 31653145 31653290 -92422882 + RSINE1 SINE B4 5 153 -12 2 826 384 88 0 0 chr9 31653290 31653347 -92422825 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 826 29 28 0 0 chr9 31653347 31653383 -92422789 + AT_rich Low_complexity Low_complexity 1 36 0 2 826 200 118 0 29 chr9 31653591 31653626 -92422546 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 826 22 0 0 0 chr9 31653641 31653663 -92422509 + AT_rich Low_complexity Low_complexity 1 22 0 2 826 204 125 0 0 chr9 31653845 31653877 -92422295 + (T)n Simple_repeat Simple_repeat 1 32 0 2 826 297 352 64 64 chr9 31654884 31655072 -92421100 - ORR1E LTR MaLR -166 193 6 2 826 1143 285 183 33 chr9 31655273 31655963 -92420209 - L1MB8 LINE L1 -6 6172 5380 2 826 605 169 191 50 chr9 31655985 31656184 -92419988 - Lx9 LINE L1 -15 7629 7403 2 826 286 246 26 17 chr9 31656209 31656325 -92419847 - L1MB8 LINE L1 -841 5305 5189 2 826 279 0 0 0 chr9 31656325 31656356 -92419816 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 826 810 223 56 0 chr9 31656356 31656571 -92419601 - L1MB8 LINE L1 -941 5205 4979 2 826 999 279 80 8 chr9 31660524 31660900 -92415272 + Lx5 LINE L1 5939 6363 -687 2 826 1323 275 84 51 chr9 31660931 31661444 -92414728 + Lx5 LINE L1 6503 7032 -18 2 826 231 88 0 0 chr9 31661459 31661493 -92414679 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 826 306 0 0 0 chr9 31661494 31661528 -92414644 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 826 344 303 164 11 chr9 31662384 31662561 -92413611 - B4A SINE B4 0 292 89 2 826 219 220 33 17 chr9 31662508 31662568 -92413604 - B1_Mus1 SINE Alu -87 61 1 2 826 227 280 130 26 chr9 31662797 31662951 -92413221 - MIRb SINE MIR -3 265 96 2 826 442 310 74 26 chr9 31662955 31663144 -92413028 + MER58A DNA MER1_type 27 224 0 2 826 513 0 0 0 chr9 31664510 31664567 -92411605 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 826 316 288 65 34 chr9 31667052 31667230 -92408942 - MIRc SINE MIR -11 197 16 2 826 309 304 99 43 chr9 31667252 31667393 -92408779 + MER117 DNA MER1_type 2 150 -47 2 826 220 277 116 11 chr9 31667550 31667645 -92408527 + MIR3 SINE MIR 98 202 -6 2 826 365 177 12 37 chr9 31668088 31668170 -92408002 + B3A SINE B2 2 81 -117 2 826 468 277 126 11 chr9 31669514 31669784 -92406388 - L2 LINE L2 -929 2490 2190 2 826 242 250 0 74 chr9 31670657 31670752 -92405420 + G-rich Low_complexity Low_complexity 1 88 0 2 826 338 283 5 32 chr9 31670766 31670994 -92405178 + G-rich Low_complexity Low_complexity 1 221 0 2 826 373 225 34 0 chr9 31671164 31671258 -92404914 + B1F1 SINE Alu 1 97 -52 2 826 22 0 0 0 chr9 31671293 31671315 -92404857 + AT_rich Low_complexity Low_complexity 1 22 0 2 826 600 314 137 31 chr9 31671473 31671962 -92404210 + L1ME1 LINE L1 5566 6106 -73 2 826 1151 75 7 0 chr9 31671969 31672116 -92404056 + B1_Mus1 SINE Alu 1 148 0 2 826 211 71 48 0 chr9 31672176 31672218 -92403954 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 2 826 232 284 29 15 chr9 31672330 31672398 -92403774 - ID4_ SINE ID -13 70 2 2 826 210 200 22 0 chr9 31672415 31672460 -92403712 + B4 SINE B4 2 47 -245 2 826 189 0 0 0 chr9 31672507 31672528 -92403644 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2 826 461 252 0 152 chr9 31672528 31672685 -92403487 - ID_B1 SINE B4 -13 211 79 2 826 2655 70 161 141 chr9 31672920 31673422 -92402750 + RLTR1B LTR ERV1 1 512 0 2 826 379 253 0 33 chr9 31673879 31673969 -92402203 - PB1D10 SINE Alu -5 112 26 2 826 212 0 36 0 chr9 31674016 31674044 -92402128 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 826 533 239 86 0 chr9 31674181 31674298 -92401874 + B1_Mur1 SINE Alu 3 129 -20 2 826 2315 90 0 21 chr9 31674345 31674674 -92401498 + L1_Mus1 LINE L1 6246 6567 0 2 826 420 20 0 0 chr9 31674981 31675030 -92401142 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2 826 220 259 0 18 chr9 31675032 31675087 -92401085 + CT-rich Low_complexity Low_complexity 2 55 0 2 826 2183 162 36 36 chr9 31676033 31676448 -92399724 - RMER1B Other Other 0 1066 652 2 826 236 311 10 62 chr9 31676469 31676565 -92399607 + MER2 DNA MER2_type 251 341 -4 2 826 212 343 56 28 chr9 31677124 31677268 -92398904 + MIR SINE MIR 63 210 -52 2 826 234 0 0 0 chr9 31677380 31677406 -92398766 + (T)n Simple_repeat Simple_repeat 1 26 0 2 826 372 43 0 0 chr9 31677429 31677475 -92398697 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2 826 310 264 0 23 chr9 31677493 31677585 -92398587 + PB1D10 SINE Alu 5 91 -223 2 826 229 362 0 14 chr9 31677947 31678017 -92398155 + tRNA-Ala-GCY_ tRNA tRNA 2 70 -5 2 826 275 243 6 34 chr9 31678017 31678196 -92397976 + (CA)n Simple_repeat Simple_repeat 2 175 0 2 826 745 269 25 20 chr9 31680494 31680691 -92395481 - B3A SINE B2 0 198 1 2 826 1161 167 28 14 chr9 31682210 31682423 -92393749 + B3 SINE B2 1 216 0 2 826 295 286 61 10 chr9 31682490 31682589 -92393583 + PB1D10 SINE Alu 1 104 -13 2 826 214 190 51 0 chr9 31682591 31682670 -92393502 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 826 369 0 0 0 chr9 31683864 31683905 -92392267 + (TCC)n Simple_repeat Simple_repeat 2 42 0 3 826 864 228 70 55 chr9 31684529 31684859 -92391313 - L1MA6 LINE L1 -9 6291 5957 3 826 183 42 0 0 chr9 31684867 31684891 -92391281 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 3 826 455 204 29 0 chr9 31684920 31685023 -92391149 + B1_Mur3 SINE Alu 44 149 0 3 826 423 267 67 30 chr9 31685043 31685178 -92390994 + L1M4 LINE L1 5680 5819 -355 3 826 331 235 17 0 chr9 31685190 31685278 -92390894 + ID4 SINE ID 7 97 -55 3 826 6217 78 7 26 chr9 31687987 31688875 -92387297 + L1_Mus3 LINE L1 5768 6638 0 3 826 436 326 7 14 chr9 31688964 31689107 -92387065 - RSINE1 SINE B4 -22 143 2 3 826 210 304 12 12 chr9 31689287 31689367 -92386805 - MER5B DNA MER1_type -34 144 65 3 826 443 298 49 45 chr9 31690165 31690453 -92385719 + HAL1 LINE L1 782 1070 -1437 3 826 442 297 44 31 chr9 31690471 31690631 -92385541 + RSINE1 SINE B4 2 163 -2 3 826 306 0 0 0 chr9 31690635 31690669 -92385503 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 3 826 526 226 9 9 chr9 31690744 31690860 -92385312 + PB1D10 SINE Alu 1 116 -1 3 826 729 258 55 0 chr9 31691985 31692167 -92384005 - B3 SINE B2 -24 192 1 3 826 200 379 25 56 chr9 31692619 31692781 -92383391 + MIRb SINE MIR 38 194 -74 3 826 383 195 114 0 chr9 31692903 31693009 -92383163 - B1F SINE Alu -1 148 26 3 826 513 0 0 0 chr9 31693492 31693549 -92382623 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 826 732 23 0 0 chr9 31693679 31693765 -92382407 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 3 826 486 0 0 0 chr9 31694511 31694565 -92381607 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 826 339 286 9 10 chr9 31696148 31696259 -92379913 - MIRb SINE MIR -54 214 96 3 826 206 62 0 30 chr9 31698474 31698507 -92377665 + (CTTTG)n Simple_repeat Simple_repeat 3 34 0 3 826 501 172 11 0 chr9 31698507 31698594 -92377578 - B1_Mus2 SINE Alu -12 135 48 3 826 432 0 0 0 chr9 31698602 31698650 -92377522 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 826 23 33 0 0 chr9 31699493 31699523 -92376649 + AT_rich Low_complexity Low_complexity 1 30 0 3 826 1264 20 7 0 chr9 31699532 31699678 -92376494 - B1_Mm SINE Alu 0 147 1 3 826 565 291 102 36 chr9 31699773 31699969 -92376203 - B3A SINE B2 -7 209 1 3 826 318 148 0 0 chr9 31700128 31700182 -92375990 + (T)n Simple_repeat Simple_repeat 1 54 0 3 826 1000 52 80 22 chr9 31700194 31700332 -92375840 - B1_Mm SINE Alu 0 147 2 3 826 231 188 45 45 chr9 31700873 31700940 -92375232 + AmnSINE1 SINE SINE 390 456 -119 3 826 1066 129 112 19 chr9 31701527 31701732 -92374440 + URR1A DNA MER1_type 1 224 -2 3 826 222 37 0 0 chr9 31701865 31701892 -92374280 + (G)n Simple_repeat Simple_repeat 1 27 0 3 826 442 207 0 0 chr9 31702143 31702230 -92373942 - B3 SINE B2 0 216 130 3 826 318 235 15 0 chr9 31704163 31704231 -92371941 - ID4_ SINE ID -13 70 2 3 826 288 300 149 54 chr9 31704516 31704664 -92371508 + RSINE1 SINE B4 3 164 -1 3 826 889 135 0 14 chr9 31705813 31705956 -92370216 - B1_Mur4 SINE Alu -9 141 1 3 826 450 0 0 0 chr9 31705970 31706020 -92370152 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 826 698 262 93 40 chr9 31706263 31706565 -92369607 - MER58B DNA MER1_type 0 341 24 3 826 329 247 12 0 chr9 31706818 31706899 -92369273 - ID4_ SINE ID 0 83 2 3 826 714 269 58 18 chr9 31708350 31708573 -92367599 - MIRb SINE MIR -7 261 30 3 826 819 156 0 0 chr9 31708716 31708844 -92367328 + B3 SINE B2 3 130 -86 3 826 423 0 0 0 chr9 31708865 31708912 -92367260 + (TAAAA)n Simple_repeat Simple_repeat 5 51 0 3 826 367 211 44 11 chr9 31709033 31709124 -92367048 + L1MA4 LINE L1 5821 5914 -386 3 826 339 25 0 0 chr9 31709140 31709180 -92366992 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 3 826 232 306 106 41 chr9 31709211 31709429 -92366743 + L1MA4 LINE L1 6046 6277 -23 3 826 243 0 0 0 chr9 31709743 31709770 -92366402 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 826 240 35 0 0 chr9 31710373 31710402 -92365770 + (TTGG)n Simple_repeat Simple_repeat 3 31 0 3 826 313 293 224 0 chr9 31710409 31710525 -92365647 - B1_Mur1 SINE Alu -7 142 1 3 826 352 235 214 36 chr9 31710539 31710707 -92365465 - B3A SINE B2 0 198 1 3 826 427 277 99 43 chr9 31710937 31711148 -92365024 - Tigger7 DNA MER2_type -66 2425 2203 3 826 351 0 0 0 chr9 31713099 31713138 -92363034 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 826 462 223 53 0 chr9 31713153 31713247 -92362925 + RSINE1 SINE B4 3 101 -64 3 826 780 212 0 0 chr9 31713794 31713940 -92362232 + B1_Mur1 SINE Alu 3 148 -1 3 826 237 347 48 26 chr9 31713950 31714094 -92362078 + B1F SINE Alu 4 148 -1 3 826 21 36 0 0 chr9 31714706 31714734 -92361438 + AT_rich Low_complexity Low_complexity 1 28 0 3 826 22 35 0 0 chr9 31715856 31715885 -92360287 + AT_rich Low_complexity Low_complexity 1 29 0 3 826 414 0 0 0 chr9 31716743 31716789 -92359383 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 3 826 28 0 0 0 chr9 31718298 31718326 -92357846 + AT_rich Low_complexity Low_complexity 1 28 0 3 826 216 0 0 0 chr9 31718359 31718383 -92357789 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 827 206 349 0 0 chr9 31721133 31721199 -92354973 + (CG)n Simple_repeat Simple_repeat 2 67 0 3 827 259 380 0 0 chr9 31722969 31723082 -92353090 + CT-rich Low_complexity Low_complexity 1 113 0 3 827 1108 120 28 6 chr9 31725282 31725458 -92350714 + B2_Mm2 SINE B2 2 181 -14 3 827 1107 129 0 0 chr9 31725461 31725639 -92350533 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 3 827 671 35 12 0 chr9 31725645 31725731 -92350441 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 3 827 468 0 0 0 chr9 31725800 31725852 -92350320 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 827 322 277 75 0 chr9 31725860 31725954 -92350218 - ID_B1 SINE B4 -20 204 104 3 827 216 312 0 24 chr9 31726208 31726290 -92349882 + MIRb SINE MIR 19 98 -170 3 827 730 286 0 0 chr9 31726577 31726738 -92349434 + ID_B1 SINE B4 54 214 -10 3 827 438 20 0 0 chr9 31726756 31726807 -92349365 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 3 827 1030 96 14 7 chr9 31726817 31726964 -92349208 - B1_Mus1 SINE Alu 0 148 1 3 827 221 167 0 18 chr9 31727719 31727774 -92348398 + CT-rich Low_complexity Low_complexity 1 54 0 3 827 1127 112 6 0 chr9 31728246 31728425 -92347747 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 827 546 91 0 0 chr9 31728425 31728502 -92347670 + (TCC)n Simple_repeat Simple_repeat 3 79 0 3 827 563 0 15 0 chr9 31729232 31729299 -92346873 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 3 827 189 107 0 0 chr9 31729551 31729579 -92346593 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 827 611 168 0 0 chr9 31730236 31730337 -92345835 + B3 SINE B2 2 102 -114 3 827 549 0 0 0 chr9 31730337 31730398 -92345774 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 827 687 181 0 52 chr9 31730431 31730565 -92345607 - B1_Mur3 SINE Alu -21 128 2 3 827 1175 75 0 0 chr9 31730652 31730799 -92345373 + B1_Mus2 SINE Alu 1 147 0 3 827 942 113 0 0 chr9 31730821 31730963 -92345209 + (GGAGA)n Simple_repeat Simple_repeat 2 143 0 3 827 850 156 209 26 chr9 31731288 31731479 -92344693 + URR1A DNA MER1_type 1 226 0 3 827 224 224 0 38 chr9 31731553 31731632 -92344540 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 3 827 640 169 8 0 chr9 31731632 31731750 -92344422 - B1_Mur4 SINE Alu -6 144 26 3 827 308 235 0 117 chr9 31731661 31731772 -92344400 - MT2B LTR ERVL -337 264 167 3 827 26 64 0 0 chr9 31732226 31732273 -92343899 + AT_rich Low_complexity Low_complexity 1 47 0 3 827 34 84 0 0 chr9 31732290 31732373 -92343799 + AT_rich Low_complexity Low_complexity 1 83 0 3 827 877 73 312 7 chr9 31732380 31732518 -92343654 + B2_Mm2 SINE B2 2 181 -14 3 827 353 82 0 0 chr9 31732553 31732614 -92343558 + B2_Mm1a SINE B2 127 187 -6 3 827 552 243 96 0 chr9 31732627 31732763 -92343409 + B1_Mur1 SINE Alu 1 149 0 3 827 187 311 103 29 chr9 31732823 31732959 -92343213 - MIRc SINE MIR -5 263 118 3 827 233 29 0 29 chr9 31733045 31733080 -92343092 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 827 3713 47 2 2 chr9 31735494 31735943 -92340229 - L1Md_F2 LINE L1 0 6582 6134 3 827 431 75 14 0 chr9 31735977 31736042 -92340130 - B2_Mm2 SINE B2 -82 116 46 3 827 1214 98 29 0 chr9 31736054 31736228 -92339944 - B2_Mm1t SINE B2 -14 179 1 3 827 420 283 35 21 chr9 31736288 31736429 -92339743 + B1F SINE Alu 1 143 -6 3 827 588 219 50 21 chr9 31736439 31736579 -92339593 + B1_Mur3 SINE Alu 5 148 -1 3 827 183 42 0 0 chr9 31736579 31736603 -92339569 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 3 827 397 324 0 35 chr9 31736621 31736736 -92339436 + B1F SINE Alu 3 113 -36 3 827 271 328 96 30 chr9 31736736 31736750 -92339422 + ID_B1 SINE B4 114 222 -2 3 827 1001 291 74 58 chr9 31736750 31737026 -92339146 + L1MB4 LINE L1 5332 5618 -562 3 827 1588 201 44 25 chr9 31737026 31737393 -92338779 - ORR1D1 LTR MaLR 0 374 1 3 827 1001 291 74 58 chr9 31737393 31737670 -92338502 + L1MB4 LINE L1 5619 5894 -286 3 827 397 284 226 21 chr9 31737768 31738002 -92338170 - RMER15 LTR ERVL -17 558 277 4 827 430 191 56 0 chr9 31738075 31738164 -92338008 + MTE2b LTR MaLR 3 96 -283 4 827 1034 265 51 41 chr9 31738205 31738520 -92337652 + MTE2b LTR MaLR 58 375 -4 4 827 1376 243 94 0 chr9 31738557 31738695 -92337477 - MTD LTR MaLR 0 419 252 4 827 2135 196 41 68 chr9 31738695 31738806 -92337366 + RLTR12B LTR ERVK 3 116 -412 4 827 870 67 75 0 chr9 31738806 31738926 -92337246 + B1_Mus1 SINE Alu 1 129 -19 4 827 2135 196 41 68 chr9 31738926 31739355 -92336817 + RLTR12B LTR ERVK 117 528 0 4 827 1376 243 94 0 chr9 31739355 31739599 -92336573 - MTD LTR MaLR -168 251 3 4 827 949 328 64 57 chr9 31739726 31740146 -92336026 - Lx8 LINE L1 -11 7462 7040 4 827 677 245 20 0 chr9 31740306 31740453 -92335719 + B3A SINE B2 8 157 -41 4 827 294 73 0 0 chr9 31740453 31740494 -92335678 + (CATA)n Simple_repeat Simple_repeat 4 44 0 4 827 1799 140 18 5 chr9 31740563 31740907 -92335265 + ORR1A2 LTR MaLR 16 367 0 4 827 9846 121 49 31 chr9 31740907 31741891 -92334281 + ORR1A2-int LTR MaLR 1 1036 -927 4 827 1201 55 7 0 chr9 31741891 31742037 -92334135 + B1_Mus1 SINE Alu 2 148 0 4 827 9846 121 49 31 chr9 31742037 31742863 -92333309 + ORR1A2-int LTR MaLR 1037 1844 -119 4 827 670 132 8 30 chr9 31744491 31744624 -92331548 + ORR1A2-int LTR MaLR 1834 1963 0 4 827 602 237 45 34 chr9 31744624 31744803 -92331369 + ORR1A2 LTR MaLR 1 181 -165 4 827 990 66 25 38 chr9 31744800 31744957 -92331215 - B2_Mm1t SINE B2 -4 189 35 4 827 849 126 0 0 chr9 31744969 31745096 -92331076 + ORR1A2 LTR MaLR 145 271 -55 4 827 959 82 8 0 chr9 31745421 31745555 -92330617 + B2_Mm2 SINE B2 1 135 -60 4 827 244 286 1 36 chr9 31747136 31747230 -92328942 + L1M5 LINE L1 5350 5441 -730 4 827 2987 138 35 78 chr9 31747820 31748424 -92327748 + RLTR20A2 LTR ERVK 1 578 0 4 827 1727 284 80 52 chr9 31748425 31748455 -92327717 - L1M2 LINE L1 -1950 4193 4153 4 827 1834 66 7 72 chr9 31748455 31748731 -92327441 - L1_Mus2 LINE L1 0 6566 6309 4 827 1727 284 80 52 chr9 31748731 31749163 -92327009 - L1M2 LINE L1 -1991 4152 3708 4 827 291 93 0 0 chr9 31749163 31749206 -92326966 + (CATA)n Simple_repeat Simple_repeat 2 44 0 4 827 1727 284 80 52 chr9 31749206 31749431 -92326741 - L1M2 LINE L1 -2436 3707 3464 4 827 709 211 7 20 chr9 31749431 31749581 -92326591 - B1_Mur4 SINE Alu -1 149 2 4 827 1727 284 80 52 chr9 31749581 31750044 -92326128 - L1M2 LINE L1 -2680 3463 3010 4 827 640 147 153 47 chr9 31750050 31750200 -92325972 - B2_Mm2 SINE B2 -27 168 3 4 827 231 61 0 0 chr9 31750266 31750299 -92325873 + (TTG)n Simple_repeat Simple_repeat 1 33 0 4 827 553 140 289 0 chr9 31750346 31750460 -92325712 - B1_Mus2 SINE Alu 0 147 1 4 827 903 118 65 13 chr9 31750470 31750625 -92325547 - B2_Mm2 SINE B2 -31 164 2 4 827 1343 285 46 90 chr9 31750625 31751492 -92324680 - L1_Rod LINE L1 -2816 3031 2203 4 827 329 207 75 65 chr9 31751529 31751585 -92324587 - PB1D7 SINE Alu -5 115 61 4 827 1102 174 298 3 chr9 31751585 31751874 -92324298 + ORR1D1 LTR MaLR 1 374 0 4 827 329 207 75 65 chr9 31751874 31751910 -92324262 - PB1D7 SINE Alu -60 60 22 4 827 198 0 0 0 chr9 31751927 31751949 -92324223 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 827 633 306 72 49 chr9 31751962 31752571 -92323601 - L1_Rod LINE L1 -3669 2178 1556 4 827 240 163 0 0 chr9 31752573 31752616 -92323556 + (CTG)n Simple_repeat Simple_repeat 2 44 0 4 827 2106 160 42 8 chr9 31752715 31753117 -92323055 + MTC LTR MaLR 6 421 0 4 827 291 311 57 10 chr9 31753931 31754052 -92322120 - B1_Mm SINE Alu -20 129 3 4 827 866 129 7 26 chr9 31754166 31754317 -92321855 + B1_Mur4 SINE Alu 1 148 -2 4 827 444 19 0 0 chr9 31754408 31754461 -92321711 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 827 557 230 20 114 chr9 31755035 31755236 -92320936 - B3 SINE B2 -34 182 1 4 827 230 106 0 21 chr9 31755284 31755332 -92320840 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 4 827 2044 152 20 26 chr9 31755576 31755927 -92320245 + Lx5 LINE L1 6646 6994 -56 4 827 245 143 114 0 chr9 31757227 31757297 -92318875 + Lx5 LINE L1 6965 7042 -8 4 827 1196 22 0 0 chr9 31757437 31757574 -92318598 - B1_Mus2 SINE Alu -9 138 2 4 827 229 205 21 135 chr9 31757842 31757938 -92318234 + MLT2C2 LTR ERVL 3 87 -377 4 827 707 305 67 24 chr9 31757884 31758213 -92317959 - ORR1D2 LTR MaLR -5 365 23 4 827 1558 145 89 41 chr9 31758220 31758558 -92317614 + ORR1B1 LTR MaLR 41 394 0 4 827 280 228 0 34 chr9 31758607 31758666 -92317506 + MER57E1 LTR ERV1 29 85 -287 4 827 3936 203 57 70 chr9 31758676 31758833 -92317339 + L1_Mur3 LINE L1 3215 3372 -2508 4 827 504 72 0 0 chr9 31758833 31758902 -92317270 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 827 3936 203 57 70 chr9 31758902 31759356 -92316816 + L1_Mur3 LINE L1 3373 3806 -2074 4 827 432 0 0 0 chr9 31759356 31759404 -92316768 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 827 3936 203 57 70 chr9 31759404 31759885 -92316287 + L1_Mur3 LINE L1 3807 4301 -1579 4 827 907 153 14 7 chr9 31759885 31760030 -92316142 + B1_Mur4 SINE Alu 5 150 0 4 827 3936 210 77 67 chr9 31760030 31760117 -92316055 + L1_Mur3 LINE L1 4302 4407 -1479 4 827 432 0 0 0 chr9 31760117 31760165 -92316007 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 827 3360 242 165 56 chr9 31760165 31760656 -92315516 + L1_Mur3 LINE L1 4408 5074 -812 4 827 2546 255 17 28 chr9 31760671 31761308 -92314864 + Lx7 LINE L1 6753 7382 -314 4 827 1612 38 0 0 chr9 31761474 31761660 -92314512 + B2_Mm1a SINE B2 2 187 -6 4 827 9592 155 78 54 chr9 31761723 31762730 -92313442 + Lx7 LINE L1 3185 4248 -1632 4 827 358 145 87 0 chr9 31762730 31762799 -92313373 + B2_Mm2 SINE B2 2 76 -119 4 827 9592 155 78 54 chr9 31762799 31763827 -92312345 + Lx7 LINE L1 4249 5337 -543 4 827 6740 198 70 23 chr9 31763812 31763882 -92312290 + Lx7 LINE L1 5749 5818 -1878 4 827 207 0 0 0 chr9 31763882 31763905 -92312267 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 827 6740 198 70 23 chr9 31763905 31764916 -92311256 + Lx7 LINE L1 5819 6897 -799 4 827 1111 62 7 40 chr9 31764916 31765068 -92311104 - B1_Mus2 SINE Alu 0 147 1 4 827 6740 198 70 23 chr9 31765068 31765431 -92310741 + Lx7 LINE L1 6898 7262 -434 4 827 3127 133 48 32 chr9 31765431 31765598 -92310574 + RLTR22_Mur LTR ERVK 1 176 -1672 4 827 486 0 0 0 chr9 31765598 31765652 -92310520 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 827 3127 133 48 32 chr9 31765652 31766096 -92310076 + RLTR22_Mur LTR ERVK 177 621 -1227 4 827 2196 174 36 64 chr9 31766096 31766718 -92309454 + RLTR31_Mm LTR ERVK 1 558 -26 4 827 241 297 0 15 chr9 31766745 31766810 -92309362 + RLTR17 LTR ERVK 629 692 0 4 827 5428 148 64 32 chr9 31766811 31767995 -92308177 + RLTR22_Mur LTR ERVK 627 1848 0 4 827 526 219 0 136 chr9 31767995 31768029 -92308143 + Lx7 LINE L1 7258 7288 -408 4 827 682 239 196 53 chr9 31768029 31768351 -92307821 - RLTR9A LTR ERVK 0 368 1 4 827 526 219 0 136 chr9 31768351 31768485 -92307687 + Lx7 LINE L1 7289 7403 -293 4 827 1071 105 0 0 chr9 31768550 31768693 -92307479 - B1_Mur4 SINE Alu -5 145 3 4 827 856 203 50 17 chr9 31768702 31768943 -92307229 + Lx7 LINE L1 7447 7695 -1 4 827 244 238 82 12 chr9 31769111 31769196 -92306976 + L1M4b LINE L1 78 168 -7166 4 827 487 334 143 72 chr9 31769781 31770240 -92305932 + L1M4b LINE L1 258 752 -6582 4 827 2426 104 77 0 chr9 31770240 31770604 -92305568 + ORR1B1 LTR MaLR 1 392 -2 4 827 487 334 143 72 chr9 31770604 31770893 -92305279 + L1M4b LINE L1 753 1059 -6275 4 827 465 207 0 0 chr9 31771195 31771277 -92304895 - B3A SINE B2 -79 119 38 4 827 2056 135 69 14 chr9 31771369 31771729 -92304443 + ORR1B1 LTR MaLR 15 394 0 4 827 1162 74 0 0 chr9 31771995 31772143 -92304029 + B1_Mus1 SINE Alu 1 148 0 4 827 601 258 6 12 chr9 31772179 31772340 -92303832 + L1M4b LINE L1 5770 5929 -1077 4 827 8222 154 45 7 chr9 31772405 31773376 -92302796 - Lx5 LINE L1 -7 7043 6029 4 827 3434 55 84 72 chr9 31773376 31773889 -92302283 + MURVY-LTR LTR ERV1 1 519 0 4 827 8222 155 42 29 chr9 31773889 31774477 -92301695 - Lx5 LINE L1 -1022 6028 5452 4 827 1258 41 0 0 chr9 31774477 31774624 -92301548 - B1_Mus2 SINE Alu 0 147 1 4 827 1531 37 5 26 chr9 31774630 31774825 -92301347 - B2_Mm1a SINE B2 0 193 3 4 827 3018 160 35 83 chr9 31774825 31775004 -92301168 - Lx5 LINE L1 -426 5451 5279 4 827 595 244 46 100 chr9 31775012 31775310 -92300862 - RLTR15 LTR ERVK -15 344 59 4 827 1020 72 72 0 chr9 31775310 31775448 -92300724 - B1_Mus1 SINE Alu 0 148 1 4 827 595 244 46 100 chr9 31775448 31775500 -92300672 - RLTR15 LTR ERVK -301 58 13 4 827 10608 132 43 6 chr9 31775513 31776133 -92300039 - Lx5 LINE L1 -584 5293 4671 4 827 324 0 0 0 chr9 31776133 31776169 -92300003 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 827 10608 132 43 6 chr9 31776169 31776962 -92299210 - Lx5 LINE L1 -1207 4670 3827 4 827 180 77 0 0 chr9 31776962 31776988 -92299184 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 827 10608 132 43 6 chr9 31776988 31777309 -92298863 - Lx5 LINE L1 -2051 3826 3497 4 827 491 192 48 0 chr9 31777440 31777572 -92298600 + B3 SINE B2 51 198 0 4 827 763 162 0 53 chr9 31777684 31777834 -92298338 + B1_Mur3 SINE Alu 8 149 0 4 827 541 298 19 50 chr9 31777933 31778092 -92298080 + B3A SINE B2 1 154 -44 4 827 315 0 0 0 chr9 31778093 31778128 -92298044 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 827 1421 206 21 27 chr9 31778147 31778481 -92297691 - RLTR14 LTR ERV1 -50 332 1 4 827 429 284 97 0 chr9 31778549 31778683 -92297489 - B1F1 SINE Alu -2 147 1 4 827 666 61 10 10 chr9 31778709 31778809 -92297363 + B1_Mm SINE Alu 48 147 0 4 827 448 188 23 6 chr9 31779132 31779232 -92296940 + B1_Mur3 SINE Alu 47 144 -5 4 827 491 289 93 17 chr9 31780116 31780440 -92295732 - MLT1B LTR MaLR -10 380 1 4 827 1030 216 55 0 chr9 31780904 31781103 -92295069 - B3 SINE B2 -6 210 1 4 827 764 180 7 41 chr9 31781748 31781893 -92294279 - B1_Mus1 SINE Alu -8 140 1 4 827 663 88 0 0 chr9 31781952 31782043 -92294129 - B1_Mus1 SINE Alu -56 92 2 4 827 826 294 79 28 chr9 31782067 31782106 -92294066 - Lx8 LINE L1 -228 7245 7206 4 827 1486 164 29 202 chr9 31782106 31782556 -92293616 - ORR1D1 LTR MaLR -2 372 1 4 827 826 294 79 28 chr9 31782556 31782806 -92293366 - Lx8 LINE L1 -268 7205 6941 4 827 1395 140 0 9 chr9 31782808 31783038 -92293134 - MTC LTR MaLR 0 421 194 4 827 608 273 66 90 chr9 31783075 31783497 -92292675 - RMER10A LTR ERVL -19 423 12 4 827 492 128 30 69 chr9 31783494 31783595 -92292577 - MTC LTR MaLR -220 201 105 4 827 516 51 77 0 chr9 31783622 31783700 -92292472 - B1_Mus1 SINE Alu -59 89 6 4 827 478 146 24 0 chr9 31783709 31783791 -92292381 - MTC LTR MaLR -333 88 5 4 827 264 108 0 0 chr9 31783801 31783838 -92292334 - Lx8 LINE L1 -536 6937 6901 4 827 284 182 18 0 chr9 31784072 31784127 -92292045 + MTEa LTR MaLR 287 342 -37 4 827 513 44 0 0 chr9 31784127 31784195 -92291977 + (TCTG)n Simple_repeat Simple_repeat 2 69 0 4 827 189 0 0 0 chr9 31784195 31784215 -92291957 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 4 827 261 0 0 0 chr9 31784215 31784244 -92291928 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 827 33 0 0 58 chr9 31784354 31784406 -92291766 + AT_rich Low_complexity Low_complexity 1 49 0 4 827 251 54 27 0 chr9 31784406 31784443 -92291729 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 827 668 224 0 0 chr9 31784472 31784597 -92291575 - B3 SINE B2 -90 126 2 4 827 261 0 0 0 chr9 31784618 31784647 -92291525 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 827 869 218 90 61 chr9 31784957 31785236 -92290936 - RLTR25B LTR ERVK 0 1028 742 4 827 1020 51 77 42 chr9 31785294 31785437 -92290735 + B1_Mus1 SINE Alu 1 148 0 4 827 3202 151 70 11 chr9 31785714 31786377 -92289795 - RLTR25B LTR ERVK -175 853 132 4 827 342 45 0 0 chr9 31786377 31786421 -92289751 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 827 1956 154 98 103 chr9 31786421 31786533 -92289639 - RLTR25B LTR ERVK -972 131 8 4 827 482 176 33 0 chr9 31786540 31786631 -92289541 + B1_Mur2 SINE Alu 19 112 -37 5 827 330 67 0 0 chr9 31787231 31787276 -92288896 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 827 251 313 179 7 chr9 31788623 31788774 -92287398 + L1MA7 LINE L1 6040 6216 -75 5 827 197 129 0 0 chr9 31788975 31789006 -92287166 + L3 LINE CR1 4250 4280 -209 5 827 260 323 31 20 chr9 31789006 31789104 -92287068 + ORR1E LTR MaLR 1 99 -260 5 827 1098 82 0 40 chr9 31789114 31789266 -92286906 + B1_Mus2 SINE Alu 2 147 0 5 827 841 45 0 0 chr9 31789765 31789876 -92286296 - B1_Mus2 SINE Alu -36 111 1 5 827 404 192 8 126 chr9 31789774 31789893 -92286279 - MT2B LTR ERVL -344 257 153 5 827 432 0 0 0 chr9 31790013 31790061 -92286111 + (TATG)n Simple_repeat Simple_repeat 3 50 0 5 827 398 307 124 34 chr9 31790145 31790411 -92285761 - B4A SINE B4 -2 290 1 5 827 1079 86 0 0 chr9 31790539 31790678 -92285494 + B1_Mus2 SINE Alu 1 139 -8 5 827 216 0 0 0 chr9 31790678 31790702 -92285470 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 5 827 422 168 26 9 chr9 31790770 31790884 -92285288 + (TG)n Simple_repeat Simple_repeat 2 117 0 5 827 592 224 54 7 chr9 31790902 31791050 -92285122 - RSINE1 SINE B4 -8 157 3 5 827 396 229 82 45 chr9 31791171 31791281 -92284891 - PB1D10 SINE Alu -3 114 1 5 827 266 0 29 0 chr9 31792221 31792255 -92283917 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 827 728 262 135 0 chr9 31793082 31793311 -92282861 - MER2 DNA MER2_type 0 345 86 5 827 661 314 58 0 chr9 31793342 31793549 -92282623 - ID_B1 SINE B4 -5 219 1 5 827 1934 159 60 78 chr9 31793542 31793689 -92282483 + RLTR28B LTR ERVL 4 131 -350 5 827 1459 68 21 0 chr9 31793689 31793879 -92282293 - B2_Mm2 SINE B2 0 195 2 5 827 1934 159 60 78 chr9 31793879 31794194 -92281978 + RLTR28B LTR ERVL 132 458 -23 5 827 318 80 0 0 chr9 31794206 31794256 -92281916 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 5 827 463 274 9 0 chr9 31794267 31794373 -92281799 - ID_B1 SINE B4 -24 200 94 5 827 1122 191 0 32 chr9 31794512 31794728 -92281444 - B3 SINE B2 -4 212 4 5 827 219 289 121 0 chr9 31794742 31794825 -92281347 - MIRb SINE MIR -122 146 54 5 827 960 40 8 0 chr9 31795871 31795997 -92280175 + B1_Mus2 SINE Alu 21 147 0 5 827 263 271 14 0 chr9 31796430 31796500 -92279672 - MIR3 SINE MIR -41 167 97 5 827 1040 112 136 44 chr9 31798051 31798257 -92277915 - URR1B DNA MER1_type 0 225 1 5 827 185 301 161 40 chr9 31798471 31798620 -92277552 + MIRb SINE MIR 74 240 -28 5 827 432 0 0 0 chr9 31798644 31798692 -92277480 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 827 2367 126 66 11 chr9 31798695 31799072 -92277100 + RMER10B LTR ERVL 1 398 0 5 827 1657 128 76 43 chr9 31799229 31799530 -92276642 + Lx4A LINE L1 6742 7052 -6 5 827 279 0 0 0 chr9 31799530 31799561 -92276611 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 827 1019 287 72 14 chr9 31799844 31800204 -92275968 - MLT1A1 LTR MaLR -27 381 1 5 827 429 20 0 0 chr9 31800311 31800361 -92275811 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 827 1094 68 0 0 chr9 31800361 31800509 -92275663 - B2_Mm2 SINE B2 -47 148 1 5 827 229 319 34 54 chr9 31800621 31800770 -92275402 - MIR SINE MIR -1 261 116 5 827 414 252 96 16 chr9 31800888 31801013 -92275159 - B3A SINE B2 -63 135 1 5 827 1174 63 0 0 chr9 31802176 31802318 -92273854 + B1_Mus1 SINE Alu 2 143 -5 5 827 207 0 0 0 chr9 31802437 31802460 -92273712 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 827 452 340 82 5 chr9 31802951 31803158 -92273014 - ID_B1 SINE B4 -1 223 1 5 827 312 252 118 0 chr9 31803749 31803868 -92272304 - ID_B1 SINE B4 -5 219 87 5 827 497 246 106 90 chr9 31803917 31804105 -92272067 - B3A SINE B2 0 195 5 5 827 560 204 22 55 chr9 31806023 31806171 -92270001 - B1_Mur4 SINE Alu 0 311 24 5 827 1305 158 159 9 chr9 31806215 31806550 -92269622 - MTC LTR MaLR -13 408 1 5 827 213 250 96 0 chr9 31806917 31806969 -92269203 + ID4 SINE ID 4 60 -23 5 827 231 265 0 0 chr9 31806923 31806972 -92269200 + tRNA-Ala-GCY_ tRNA tRNA 9 57 -18 5 827 312 361 0 9 chr9 31806979 31807088 -92269084 + GA-rich Low_complexity Low_complexity 4 111 0 5 827 819 131 28 11 chr9 31807089 31807139 -92269033 + polypurine Low_complexity Low_complexity 1 48 0 5 827 983 119 23 0 chr9 31807139 31807315 -92268857 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 827 819 131 28 11 chr9 31807315 31807441 -92268731 + polypurine Low_complexity Low_complexity 49 179 0 5 827 1189 75 0 0 chr9 31807636 31807783 -92268389 - B1_Mus1 SINE Alu 0 148 2 5 827 936 309 52 23 chr9 31807789 31808133 -92268039 + RCHARR1 DNA MER1_type 3 356 -618 5 827 1114 75 0 14 chr9 31808222 31808370 -92267802 + B1_Mus1 SINE Alu 3 148 0 5 827 278 26 0 25 chr9 31808640 31808680 -92267492 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 5 827 761 193 0 57 chr9 31808680 31808830 -92267342 - B1_Mur4 SINE Alu -8 142 2 5 827 201 154 0 0 chr9 31808951 31808990 -92267182 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 827 1298 205 148 27 chr9 31809010 31809207 -92266965 - MTD LTR MaLR -8 411 190 5 827 1912 127 174 17 chr9 31809207 31809551 -92266621 - RMER10B LTR ERVL 0 398 1 5 827 1298 205 148 27 chr9 31809551 31809719 -92266453 - MTD LTR MaLR -230 189 2 5 827 273 293 24 48 chr9 31809842 31810010 -92266162 + B4A SINE B4 13 165 0 5 827 2272 133 31 140 chr9 31810091 31810599 -92265573 - RLTR11B LTR ERVK 0 453 1 5 827 1223 61 83 6 chr9 31812165 31812346 -92263826 + B2_Mm2 SINE B2 1 195 0 5 827 322 281 44 82 chr9 31813075 31813257 -92262915 - MIR SINE MIR -16 246 72 5 827 1101 271 82 16 chr9 31814609 31814924 -92261248 + ORR1D2 LTR MaLR 25 360 -10 5 827 468 255 182 21 chr9 31815208 31815400 -92260772 - ID_B1 SINE B4 0 224 2 5 827 1815 95 8 4 chr9 31815425 31815679 -92260493 - L1_Mus2 LINE L1 -1 6565 6311 5 827 234 148 0 0 chr9 31815694 31815748 -92260424 + (TTTTTG)n Simple_repeat Simple_repeat 6 59 0 5 827 867 193 14 0 chr9 31815748 31815893 -92260279 - B1_Mur2 SINE Alu 0 149 3 5 827 201 159 0 0 chr9 31815932 31815976 -92260196 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 5 827 213 214 0 23 chr9 31816027 31816070 -92260102 + polypyrimidine Low_complexity Low_complexity 3 44 0 5 827 351 192 0 0 chr9 31816249 31816322 -92259850 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 5 827 423 0 0 0 chr9 31816328 31816375 -92259797 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 827 1209 132 32 0 chr9 31817446 31817635 -92258537 + B2_Mm2 SINE B2 1 195 0 5 827 772 213 201 0 chr9 31817758 31817932 -92258240 - B3 SINE B2 -7 209 1 5 827 491 291 8 8 chr9 31817942 31818070 -92258102 - ID_B1 SINE B4 -5 219 92 5 827 231 339 95 102 chr9 31818125 31818450 -92257722 + MLT1J LTR MaLR 104 426 -86 5 827 180 111 0 0 chr9 31819106 31819133 -92257039 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 827 250 352 63 8 chr9 31819135 31819261 -92256911 - LTR88c LTR Genie? -723 139 7 5 827 250 275 12 12 chr9 31819376 31819457 -92256715 + ID4 SINE ID 2 82 -1 5 827 820 298 123 0 chr9 31819699 31819991 -92256181 + MER2 DNA MER2_type 2 329 -16 5 827 243 0 0 0 chr9 31820477 31820504 -92255668 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 827 879 34 17 0 chr9 31820507 31820625 -92255547 - B1_Mus1 SINE Alu -6 142 23 5 827 2268 101 132 3 chr9 31820755 31821104 -92255068 - ORR1B1 LTR MaLR 0 394 1 5 827 237 312 31 31 chr9 31821139 31821157 -92255015 - B4 SINE B4 -194 98 3 5 827 362 256 13 0 chr9 31821157 31821235 -92254937 - ID4_ SINE ID -2 81 3 5 827 807 253 58 75 chr9 31821347 31821642 -92254530 - MTEa LTR MaLR -20 359 70 5 827 1254 261 29 26 chr9 31821642 31821992 -92254180 + ORR1E LTR MaLR 4 354 -5 5 827 269 279 0 0 chr9 31822005 31822073 -92254099 - MTEa LTR MaLR -311 68 1 5 827 1014 216 39 10 chr9 31822566 31822772 -92253400 - B3 SINE B2 -1 215 4 5 827 538 227 206 90 chr9 31822828 31822974 -92253198 - B3 SINE B2 -5 211 42 5 827 1135 75 0 7 chr9 31822974 31823121 -92253051 - B1_Mus1 SINE Alu 0 148 3 5 827 538 227 206 90 chr9 31823121 31823163 -92253009 - B3 SINE B2 -175 41 1 5 827 372 232 9 57 chr9 31823347 31823452 -92252720 + RLTR20D LTR ERVK 364 463 -105 5 827 234 0 0 0 chr9 31823452 31823478 -92252694 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 827 334 191 0 0 chr9 31826161 31826224 -92249948 + B3 SINE B2 148 210 -6 5 827 252 200 0 0 chr9 31826224 31826284 -92249888 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 5 827 240 143 0 0 chr9 31826282 31826324 -92249848 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 5 827 261 222 183 12 chr9 31827045 31827127 -92249045 - B3A SINE B2 -27 171 76 5 827 351 244 81 0 chr9 31827605 31827691 -92248481 + PB1D7 SINE Alu 8 100 -20 5 827 324 0 0 0 chr9 31827761 31827797 -92248375 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 827 228 274 81 0 chr9 31827797 31827859 -92248313 - ID4_ SINE ID -11 72 6 5 827 21 71 0 0 chr9 31828084 31828126 -92248046 + AT_rich Low_complexity Low_complexity 1 42 0 5 827 518 250 17 0 chr9 31828165 31828281 -92247891 - RSINE1 SINE B4 -46 119 2 5 827 509 252 0 9 chr9 31829646 31829754 -92246418 + PB1D10 SINE Alu 2 108 -9 6 827 436 295 60 30 chr9 31830188 31830422 -92245750 - L1MA4 LINE L1 -291 6009 5769 6 827 702 264 19 6 chr9 31830473 31830633 -92245539 - RSINE1 SINE B4 0 165 4 6 827 406 273 24 16 chr9 31830817 31830940 -92245232 - B1F SINE Alu 0 149 26 6 827 388 239 167 87 chr9 31830941 31831057 -92245115 - L1MA4 LINE L1 -696 5601 5488 6 827 1041 99 7 0 chr9 31831057 31831199 -92244973 - B1_Mm SINE Alu 0 147 5 6 827 388 239 167 87 chr9 31831199 31831334 -92244838 - L1MA4 LINE L1 -810 5487 5330 6 827 1030 210 194 0 chr9 31831318 31831647 -92244525 - Lx9 LINE L1 -4 7640 7248 6 827 180 0 0 0 chr9 31832259 31832279 -92243893 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 827 441 0 0 0 chr9 31832718 31832767 -92243405 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 827 418 132 125 3 chr9 31832913 31833019 -92243153 + B1_Mur4 SINE Alu 18 145 -2 6 827 1366 79 6 0 chr9 31833314 31833492 -92242680 - B2_Mm1a SINE B2 -14 179 1 6 827 274 214 32 53 chr9 31833503 31833597 -92242575 - MLT1A1 LTR MaLR -2 406 315 6 827 287 333 0 9 chr9 31833869 31833975 -92242197 + PB1 SINE Alu 1 105 -22 6 827 226 98 39 0 chr9 31834077 31834128 -92242044 + (TTG)n Simple_repeat Simple_repeat 2 54 0 6 827 996 233 5 5 chr9 31834215 31834426 -92241746 - B3 SINE B2 -4 212 2 6 827 220 225 40 40 chr9 31834803 31834877 -92241295 + ID2 SINE ID 1 74 -9 6 827 671 253 7 178 chr9 31834812 31834899 -92241273 + B4A SINE B4 12 97 -195 6 827 295 309 122 55 chr9 31834899 31835170 -92241002 + B4A SINE B4 4 292 0 6 827 671 253 7 178 chr9 31835170 31835375 -92240797 + B4A SINE B4 98 254 -38 6 827 587 165 148 0 chr9 31835927 31836042 -92240130 + B1_Mur4 SINE Alu 6 137 -13 6 827 235 228 128 134 chr9 31835933 31836044 -92240128 + MT2B LTR ERVL 175 290 -311 6 827 213 39 0 0 chr9 31836044 31836070 -92240102 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 827 235 228 128 134 chr9 31836070 31836130 -92240042 + MT2B LTR ERVL 291 344 -257 6 827 491 292 72 94 chr9 31836209 31836297 -92239875 + ID SINE ID 2 75 -149 6 827 545 80 0 11 chr9 31836297 31836386 -92239786 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 827 618 60 0 0 chr9 31836386 31836468 -92239704 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 827 515 195 114 0 chr9 31836478 31836601 -92239571 + B1F SINE Alu 8 144 -5 6 827 499 277 166 17 chr9 31836602 31836837 -92239335 - L2 LINE L2 -956 2463 2194 6 827 748 209 0 14 chr9 31837072 31837213 -92238959 - B1_Mus2 SINE Alu -6 141 3 6 827 198 0 0 0 chr9 31837228 31837250 -92238922 + (CAA)n Simple_repeat Simple_repeat 1 22 0 6 827 405 0 0 0 chr9 31838165 31838210 -92237962 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 6 827 180 0 0 0 chr9 31840012 31840032 -92236140 + (CGG)n Simple_repeat Simple_repeat 3 22 0 6 827 24 32 0 0 chr9 31840091 31840122 -92236050 + GC_rich Low_complexity Low_complexity 1 31 0 6 827 291 201 21 65 chr9 31840125 31840311 -92235861 + (CGCGG)n Simple_repeat Simple_repeat 1 178 0 6 827 31 68 0 0 chr9 31840321 31840380 -92235792 + GC_rich Low_complexity Low_complexity 1 59 0 6 827 264 167 0 0 chr9 31842284 31842332 -92233840 - ID SINE ID -171 53 6 6 827 795 216 168 40 chr9 31842624 31842971 -92233201 - MTD LTR MaLR 0 419 1 6 827 294 262 0 70 chr9 31843215 31843301 -92232871 - ID4_ SINE ID 0 83 4 6 827 276 53 0 0 chr9 31843478 31843516 -92232656 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 827 1110 52 7 0 chr9 31843516 31843652 -92232520 - B1_Mus2 SINE Alu -10 137 1 6 827 253 254 17 0 chr9 31843770 31843829 -92232343 + ID4 SINE ID 23 82 -1 6 827 637 256 255 16 chr9 31843870 31844105 -92232067 - B4 SINE B4 0 292 2 6 827 251 305 11 89 chr9 31844228 31844318 -92231854 + ID4 SINE ID 1 83 0 6 827 427 335 46 6 chr9 31844299 31844473 -92231699 + MER58B DNA MER1_type 161 341 0 6 827 279 0 0 0 chr9 31844482 31844513 -92231659 + (T)n Simple_repeat Simple_repeat 1 31 0 6 827 226 287 52 0 chr9 31844718 31844806 -92231366 + MIRb SINE MIR 159 254 -14 6 827 25 0 0 0 chr9 31844991 31845016 -92231156 + AT_rich Low_complexity Low_complexity 1 25 0 6 827 627 259 59 11 chr9 31846043 31846230 -92229942 - B3A SINE B2 0 198 3 6 827 191 333 46 0 chr9 31846686 31846773 -92229399 + MIR3 SINE MIR 111 201 -7 6 827 323 272 0 12 chr9 31847284 31847366 -92228806 - B4A SINE B4 -10 282 202 6 827 326 299 82 40 chr9 31847663 31847881 -92228291 + MLT1J LTR MaLR 3 267 -245 6 827 249 33 0 0 chr9 31847973 31848003 -92228169 + (T)n Simple_repeat Simple_repeat 1 30 0 6 827 21 0 0 0 chr9 31848184 31848205 -92227967 + AT_rich Low_complexity Low_complexity 1 21 0 6 827 1149 76 14 0 chr9 31848223 31848368 -92227804 - B1_Mus2 SINE Alu 0 147 1 6 827 641 266 63 0 chr9 31848491 31848649 -92227523 + ID_B1 SINE B4 5 172 -52 6 827 440 276 16 41 chr9 31848693 31848814 -92227358 + ID_B1 SINE B4 75 192 -32 6 827 439 304 65 0 chr9 31848834 31848972 -92227200 + B1F2 SINE Alu 3 149 0 6 827 228 262 37 24 chr9 31848996 31849078 -92227094 - ID4_ SINE ID 0 83 1 6 827 1784 179 19 30 chr9 31849273 31849636 -92226536 - ORR1B2 LTR MaLR -8 359 1 6 827 342 337 143 0 chr9 31850150 31850325 -92225847 + MER20 DNA MER1_type 2 201 -18 6 828 385 295 63 21 chr9 31850518 31850660 -92225512 - L1MC1 LINE L1 -30 6303 6156 6 828 702 200 74 26 chr9 31850675 31850865 -92225307 - L1MC1 LINE L1 -238 6095 5897 6 828 381 318 64 39 chr9 31850886 31850936 -92225236 - L1MC1 LINE L1 -195 5961 5908 6 828 425 278 114 75 chr9 31850936 31851216 -92224956 - B4A SINE B4 0 292 2 6 828 1863 223 36 15 chr9 31851216 31851669 -92224503 - L1MC1 LINE L1 -249 5907 5445 6 828 293 276 219 0 chr9 31852624 31852729 -92223443 - B1F SINE Alu -21 128 1 6 828 342 0 0 0 chr9 31852744 31852782 -92223390 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 828 693 335 59 4 chr9 31852788 31853043 -92223129 - B4A SINE B4 -22 270 2 6 828 25 0 0 0 chr9 31853057 31853082 -92223090 + AT_rich Low_complexity Low_complexity 1 25 0 6 828 1012 44 7 0 chr9 31853084 31853219 -92222953 + B1_Mus1 SINE Alu 13 148 0 6 828 201 108 0 0 chr9 31853222 31853259 -92222913 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 6 828 270 167 76 0 chr9 31853302 31853368 -92222804 - B3 SINE B2 0 216 146 6 828 820 260 0 0 chr9 31853373 31853554 -92222618 - B3 SINE B2 -29 187 7 6 828 316 325 192 76 chr9 31854044 31854252 -92221920 - MER115 DNA Tip100 -385 308 66 6 828 808 179 0 7 chr9 31854252 31854398 -92221774 - B1_Mus2 SINE Alu -2 145 1 6 828 316 325 192 76 chr9 31854398 31854465 -92221707 - MER115 DNA Tip100 -628 65 1 6 828 200 111 0 27 chr9 31855111 31855148 -92221024 + (TCC)n Simple_repeat Simple_repeat 2 37 0 6 828 25 0 0 0 chr9 31855148 31855173 -92220999 + AT_rich Low_complexity Low_complexity 1 25 0 6 828 590 188 84 35 chr9 31855200 31855343 -92220829 - B1_Mur4 SINE Alu 0 150 1 6 828 1199 47 0 13 chr9 31855382 31855532 -92220640 - B1_Mus1 SINE Alu 0 148 1 6 828 28 0 0 0 chr9 31855587 31855615 -92220557 + AT_rich Low_complexity Low_complexity 1 28 0 6 828 266 0 29 0 chr9 31855749 31855783 -92220389 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 6 828 1102 83 14 7 chr9 31855784 31855930 -92220242 - B1_Mus1 SINE Alu 0 148 2 6 828 1969 105 16 30 chr9 31855930 31856294 -92219878 - ORR1A3 LTR MaLR -3 391 1 6 828 376 214 0 28 chr9 31856840 31856912 -92219260 - ID4 SINE ID -2 81 12 6 828 503 277 46 49 chr9 31857121 31857425 -92218747 - RLTR15 LTR ERVK -30 329 27 6 828 378 0 0 0 chr9 31857448 31857490 -92218682 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 828 186 43 0 0 chr9 31857490 31857512 -92218660 + (TTATA)n Simple_repeat Simple_repeat 4 26 0 6 828 1684 271 131 35 chr9 31857512 31858560 -92217612 - Lx8 LINE L1 -41 7432 6284 6 828 21 0 0 0 chr9 31858581 31858602 -92217570 + AT_rich Low_complexity Low_complexity 1 21 0 6 828 861 190 50 0 chr9 31858603 31858782 -92217390 - B3 SINE B2 -28 188 1 6 828 182 303 15 0 chr9 31859137 31859203 -92216969 - MIR SINE MIR -36 226 160 6 828 707 179 0 6 chr9 31860014 31860194 -92215978 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 828 559 227 31 0 chr9 31860195 31860323 -92215849 - B1_Mus2 SINE Alu -15 132 1 6 828 593 219 0 0 chr9 31861113 31861232 -92214940 - B1_Mur2 SINE Alu -5 144 26 6 828 21 0 0 0 chr9 31862092 31862113 -92214059 + AT_rich Low_complexity Low_complexity 1 21 0 6 828 1484 68 26 0 chr9 31863254 31863444 -92212728 - B2_Mm2 SINE B2 0 195 1 6 828 212 315 0 18 chr9 31863746 31863801 -92212371 + ID4 SINE ID 10 63 -20 6 828 482 232 41 97 chr9 31864056 31864186 -92211986 + MER2 DNA MER2_type 29 166 -179 6 828 721 167 110 29 chr9 31864186 31864322 -92211850 - B1_Mur2 SINE Alu -1 148 2 6 828 482 232 41 97 chr9 31864322 31864387 -92211785 + MER2 DNA MER2_type 167 213 -132 6 828 545 29 0 0 chr9 31864422 31864492 -92211680 + B1_Mus2 SINE Alu 70 139 -8 6 828 907 230 39 10 chr9 31864765 31864971 -92211201 - B3 SINE B2 0 216 5 6 828 957 229 25 30 chr9 31865003 31865206 -92210966 - B3 SINE B2 -13 203 2 6 828 239 305 46 58 chr9 31865734 31865821 -92210351 - B1F2 SINE Alu -61 88 3 6 828 294 352 0 9 chr9 31866202 31866308 -92209864 - RSINE1 SINE B4 0 165 61 6 828 1990 78 3 39 chr9 31866328 31866633 -92209539 + MTB LTR MaLR 2 295 -105 6 828 7997 52 5 4 chr9 31866633 31867744 -92208428 - L1Md_F2 LINE L1 -1 6581 5470 7 828 607 85 0 0 chr9 31867750 31867832 -92208340 + MTB LTR MaLR 311 392 -8 6 828 1454 55 11 0 chr9 31868275 31868458 -92207714 + B2_Mm1t SINE B2 2 186 -7 7 828 687 246 152 29 chr9 31869133 31869443 -92206729 - L1ME3A LINE L1 -200 5973 5626 7 828 353 254 119 45 chr9 31869764 31869941 -92206231 - L1ME3A LINE L1 -1288 4858 4669 7 828 1189 41 14 0 chr9 31870049 31870194 -92205978 - B1_Mus1 SINE Alu 0 148 2 7 828 49 0 0 0 chr9 31870725 31870774 -92205398 + AT_rich Low_complexity Low_complexity 1 49 0 7 828 1642 184 113 5 chr9 31870980 31871351 -92204821 - MTC LTR MaLR -8 413 3 7 828 252 292 80 100 chr9 31871588 31871839 -92204333 - Charlie13b DNA Charlie -30 482 237 7 828 651 295 82 22 chr9 31872161 31872428 -92203744 - Tigger7 DNA MER2_type -21 2470 2188 7 828 240 286 119 0 chr9 31872417 31872501 -92203671 + Tigger7 DNA MER2_type 217 310 -2181 7 828 255 228 0 0 chr9 31872500 31872557 -92203615 + Tigger7 DNA MER2_type 2133 2189 -302 7 828 309 221 29 0 chr9 31872562 31872630 -92203542 + MTEa LTR MaLR 289 358 -21 7 828 23 0 0 0 chr9 31872816 31872839 -92203333 + AT_rich Low_complexity Low_complexity 1 23 0 7 828 895 219 15 10 chr9 31872843 31873046 -92203126 - B3 SINE B2 -12 204 1 7 828 223 288 86 12 chr9 31873727 31873808 -92202364 - PB1 SINE Alu -20 107 21 7 828 504 261 58 13 chr9 31873978 31874215 -92201957 - MTEb LTR MaLR -8 371 104 7 828 1015 132 0 0 chr9 31874464 31874608 -92201564 + B1_Mus1 SINE Alu 5 148 0 7 828 188 0 74 0 chr9 31874626 31874653 -92201519 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 828 1206 55 7 0 chr9 31874737 31874883 -92201289 - B1_Mus1 SINE Alu 0 148 2 7 828 1335 95 16 10 chr9 31875004 31875196 -92200976 - B2_Mm2 SINE B2 0 195 3 7 828 575 237 264 42 chr9 31875547 31875877 -92200295 + MTD LTR MaLR 1 403 -16 7 828 320 268 145 38 chr9 31875877 31876036 -92200136 - B4A SINE B4 -48 244 69 7 828 237 176 54 0 chr9 31876094 31876168 -92200004 + (TA)n Simple_repeat Simple_repeat 1 78 0 7 828 273 226 48 0 chr9 31876190 31876252 -92199920 - B4A SINE B4 -213 79 15 7 828 1122 56 0 34 chr9 31876564 31876711 -92199461 + B1_Mus1 SINE Alu 2 143 -5 7 828 577 256 0 42 chr9 31876846 31876989 -92199183 + B1_Mur2 SINE Alu 1 137 -12 7 828 345 24 0 0 chr9 31876991 31877033 -92199139 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 7 828 391 151 68 0 chr9 31877085 31877158 -92199014 + L1M5 LINE L1 5565 5642 -482 7 828 186 143 0 0 chr9 31877163 31877198 -92198974 + (CAT)n Simple_repeat Simple_repeat 2 36 0 7 828 427 294 51 32 chr9 31877201 31877359 -92198813 - RSINE1 SINE B4 0 165 5 7 828 408 55 0 0 chr9 31877678 31877733 -92198439 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 828 3192 53 13 2 chr9 31877777 31878175 -92197997 + L1_Mus1 LINE L1 6166 6567 0 7 828 3025 170 118 36 chr9 31878253 31878921 -92197251 - RMER19B LTR ERVK -6 896 174 7 828 1778 274 94 71 chr9 31878921 31879762 -92196410 + RMER13A LTR ERVK 1 860 0 7 828 767 181 52 62 chr9 31879762 31879942 -92196230 - RMER19B LTR ERVK -724 178 1 7 828 183 345 65 54 chr9 31880339 31880431 -92195741 + MIR SINE MIR 19 111 -151 7 828 473 312 71 0 chr9 31880525 31880679 -92195493 - B3 SINE B2 -51 165 1 7 828 570 15 0 0 chr9 31881777 31881844 -92194328 + (CCA)n Simple_repeat Simple_repeat 2 68 0 7 828 236 264 69 0 chr9 31881947 31882019 -92194153 - PB1D10 SINE Alu -28 89 13 7 828 345 304 0 0 chr9 31882251 31882353 -92193819 + Tigger5 DNA MER2_type 2297 2398 -8 7 828 461 305 104 20 chr9 31883507 31883627 -92192545 - ID_B1 SINE B4 0 224 84 7 828 312 48 0 0 chr9 31883627 31883669 -92192503 + (TTG)n Simple_repeat Simple_repeat 2 43 0 7 828 461 305 104 20 chr9 31883669 31883689 -92192483 - ID SINE ID -141 83 66 7 828 180 0 0 0 chr9 31883689 31883709 -92192463 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 828 1349 90 0 0 chr9 31883711 31883889 -92192283 - B2_Mm1a SINE B2 -15 178 1 7 828 461 305 104 20 chr9 31883889 31883945 -92192227 - ID SINE ID -159 65 10 7 828 371 0 50 17 chr9 31884138 31884198 -92191974 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 828 1016 16 0 0 chr9 31885657 31885783 -92190389 + B1_Mm SINE Alu 22 147 0 7 828 264 30 0 0 chr9 31885783 31885816 -92190356 + (CAA)n Simple_repeat Simple_repeat 2 34 0 7 828 2191 121 15 6 chr9 31886569 31886903 -92189269 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 828 6746 55 12 18 chr9 31886905 31887760 -92188412 - IAPEz-int LTR ERVK -2 6479 5630 7 828 22923 67 38 6 chr9 31887746 31890721 -92185451 - IAPEz-int LTR ERVK -3405 3076 8 7 828 2317 121 15 6 chr9 31890721 31891055 -92185117 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 828 395 309 86 7 chr9 31891226 31891366 -92184806 - B3A SINE B2 -9 189 39 7 828 339 78 0 0 chr9 31892157 31892208 -92183964 + (ATAGG)n Simple_repeat Simple_repeat 3 53 0 7 828 1194 82 0 0 chr9 31892258 31892405 -92183767 + B1_Mm SINE Alu 1 147 0 7 828 411 21 0 0 chr9 31892405 31892453 -92183719 + (GGA)n Simple_repeat Simple_repeat 2 49 0 7 828 1358 14 0 0 chr9 31893914 31894060 -92182112 + B1_Mus2 SINE Alu 2 147 0 7 828 261 0 0 0 chr9 31894060 31894089 -92182083 + (A)n Simple_repeat Simple_repeat 1 29 0 7 828 1915 211 19 58 chr9 31894315 31894732 -92181440 - MTD LTR MaLR 0 419 19 7 828 509 209 31 18 chr9 31894765 31894877 -92181295 + B1_Mur2 SINE Alu 21 136 -13 7 828 25 0 0 0 chr9 31895276 31895301 -92180871 + AT_rich Low_complexity Low_complexity 1 25 0 7 828 615 27 0 0 chr9 31896487 31896560 -92179612 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 7 828 751 230 99 0 chr9 31896576 31896767 -92179405 - B3 SINE B2 -5 211 2 7 828 380 348 72 7 chr9 31897068 31897207 -92178965 + RSINE1 SINE B4 4 151 -14 7 828 450 0 0 0 chr9 31897214 31897264 -92178908 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 828 332 325 88 25 chr9 31897885 31898125 -92178047 - MLT1C LTR MaLR -191 276 22 7 828 2325 170 172 2 chr9 31898604 31899052 -92177120 + RLTR28 LTR ERVL 1 524 0 7 828 455 322 58 32 chr9 31899182 31899336 -92176836 + B4A SINE B4 1 158 -134 7 828 343 186 11 23 chr9 31899384 31899472 -92176700 + CT-rich Low_complexity Low_complexity 3 89 0 7 828 324 0 0 0 chr9 31899892 31899928 -92176244 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 828 370 266 28 28 chr9 31900296 31900439 -92175733 - L1M4c LINE L1 -3974 2410 2268 7 828 1021 249 135 20 chr9 31900527 31900639 -92175533 - Lx8 LINE L1 -4 7469 7355 7 828 186 43 0 0 chr9 31900639 31900662 -92175510 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 828 1021 249 135 20 chr9 31900662 31900905 -92175267 - Lx8 LINE L1 -119 7354 7074 7 828 1912 178 109 23 chr9 31901013 31901399 -92174773 - MTD LTR MaLR 0 419 1 7 828 613 332 24 40 chr9 31905584 31905835 -92170337 - MTE-int LTR MaLR -584 996 750 7 828 230 0 0 32 chr9 31905893 31905924 -92170248 + (TTA)n Simple_repeat Simple_repeat 2 31 0 7 828 816 214 21 31 chr9 31906071 31906264 -92169908 - B3 SINE B2 -6 210 20 7 828 1583 53 16 5 chr9 31906277 31906468 -92169704 - B2_Mm1t SINE B2 0 193 1 7 828 609 344 31 31 chr9 31906599 31906827 -92169345 - MTE-int LTR MaLR -1113 467 240 7 828 560 183 19 28 chr9 31906824 31906931 -92169241 + RMER15 LTR ERVL 470 575 0 7 828 277 388 47 0 chr9 31906990 31907160 -92169012 - MIRb SINE MIR -12 256 79 7 828 396 0 0 0 chr9 31907214 31907258 -92168914 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 828 504 282 65 38 chr9 31907319 31907503 -92168669 - B3A SINE B2 -8 190 2 7 828 342 269 0 0 chr9 31907510 31907603 -92168569 - PB1D7 SINE Alu -4 116 24 7 828 1235 49 0 0 chr9 31907664 31907807 -92168365 - B1_Mus1 SINE Alu -5 143 1 7 828 276 189 167 62 chr9 31908003 31908099 -92168073 - L1MC3 LINE L1 -22 7763 7658 7 828 4182 179 48 20 chr9 31909341 31909861 -92166311 + Lx7 LINE L1 6509 7041 -655 7 828 564 15 0 0 chr9 31909861 31909926 -92166246 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 828 4182 179 48 20 chr9 31909926 31910197 -92165975 + Lx7 LINE L1 7042 7321 -375 7 828 4907 95 63 10 chr9 31910199 31910910 -92165262 - Lx3A LINE L1 -3 6978 6230 7 828 993 177 0 0 chr9 31910942 31911089 -92165083 - B1_Mus1 SINE Alu -1 147 1 7 828 25 51 0 0 chr9 31911119 31911158 -92165014 + AT_rich Low_complexity Low_complexity 1 39 0 7 828 243 140 35 17 chr9 31911160 31911218 -92164954 + Lx7 LINE L1 7356 7414 -282 7 828 2017 266 86 30 chr9 31911209 31911907 -92164265 - Lx5 LINE L1 0 7050 6461 7 828 533 187 145 22 chr9 31911959 31912213 -92163959 + Lx7 LINE L1 7395 7696 0 7 828 346 208 39 0 chr9 31913141 31913218 -92162954 - PB1 SINE Alu -43 84 5 7 828 699 261 73 106 chr9 31913629 31913903 -92162269 - B4A SINE B4 -4 288 24 7 828 318 200 57 0 chr9 31913969 31914039 -92162133 - PB1D10 SINE Alu -18 99 26 7 828 361 0 0 39 chr9 31914123 31914174 -92161998 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 7 828 713 202 155 17 chr9 31914183 31914364 -92161808 - B3 SINE B2 -10 206 1 7 828 8237 46 5 3 chr9 31914401 31915549 -92160623 - L1Md_F3 LINE L1 -2 6582 5432 7 828 297 235 0 56 chr9 31915663 31915695 -92160477 + polypyrimidine Low_complexity Low_complexity 40 71 0 7 828 432 0 0 0 chr9 31915695 31915743 -92160429 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 828 297 235 0 56 chr9 31915743 31915782 -92160390 + polypyrimidine Low_complexity Low_complexity 4 39 0 7 828 396 0 0 0 chr9 31915782 31915826 -92160346 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 828 974 285 26 37 chr9 31917639 31917909 -92158263 + B4 SINE B4 26 292 0 7 828 272 119 0 17 chr9 31918084 31918144 -92158028 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 7 828 486 219 62 10 chr9 31918151 31918248 -92157924 - RSINE1 SINE B4 -61 104 3 7 828 234 91 0 0 chr9 31918250 31918283 -92157889 + (GGA)n Simple_repeat Simple_repeat 3 35 0 7 828 351 136 0 0 chr9 31918292 31918351 -92157821 + (TCC)n Simple_repeat Simple_repeat 2 60 0 7 828 2269 138 36 36 chr9 31918353 31918803 -92157369 + RMER6A LTR ERVK 131 580 -176 7 828 342 0 0 0 chr9 31919284 31919322 -92156850 + (TTCCC)n Simple_repeat Simple_repeat 1 38 0 7 828 663 78 0 0 chr9 31919325 31919415 -92156757 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 8 828 4157 233 897 4 chr9 31919891 31920006 -92156166 - Lx9 LINE L1 -6 7638 7421 8 828 396 0 0 0 chr9 31920006 31920050 -92156122 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 828 4157 210 41 61 chr9 31920050 31921091 -92155081 - Lx9 LINE L1 -224 7420 6400 8 828 480 269 10 0 chr9 31921111 31921215 -92154957 - PB1D9 SINE Alu -15 105 1 8 828 326 114 0 48 chr9 31921493 31921576 -92154596 + CT-rich Low_complexity Low_complexity 3 81 0 8 828 784 309 47 54 chr9 31921630 31921820 -92154352 - B4A SINE B4 -8 284 91 8 828 657 254 137 6 chr9 31921820 31922002 -92154170 - B3 SINE B2 -10 206 1 8 828 784 309 47 54 chr9 31922002 31922088 -92154084 - B4A SINE B4 -202 90 10 8 828 873 74 0 0 chr9 31922731 31922853 -92153319 + (CTCA)n Simple_repeat Simple_repeat 3 124 0 8 828 712 171 17 0 chr9 31924554 31924671 -92151501 + B1_Mur4 SINE Alu 19 137 -13 8 828 504 0 0 0 chr9 31924671 31924727 -92151445 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 8 828 354 305 46 28 chr9 31926923 31927031 -92149141 + PB1D10 SINE Alu 1 110 -7 8 828 219 189 19 0 chr9 31927031 31927084 -92149088 + T-rich Low_complexity Low_complexity 3 56 0 8 828 305 224 98 21 chr9 31928319 31928448 -92147724 + B1_Mur1 SINE Alu 12 145 -4 8 828 4256 44 24 8 chr9 31928674 31929178 -92146994 + RLTR1B LTR ERV1 1 512 0 8 828 965 137 14 0 chr9 31929877 31930016 -92146156 - B1_Mur4 SINE Alu -6 144 4 8 828 569 227 153 0 chr9 31930103 31930253 -92145919 - B3 SINE B2 0 216 44 8 828 1567 77 0 5 chr9 31930821 31931017 -92145155 + B2_Mm2 SINE B2 1 195 0 8 828 360 0 0 0 chr9 31931515 31931555 -92144617 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 828 318 104 361 9 chr9 31931573 31931678 -92144494 - B2_Mm2 SINE B2 -7 188 47 8 828 1265 114 11 6 chr9 31931709 31931886 -92144286 - B2_Mm1t SINE B2 -14 179 2 8 828 332 62 125 0 chr9 31932031 31932079 -92144093 - B2_Mm2 SINE B2 -141 54 1 8 828 227 298 128 0 chr9 31932248 31932389 -92143783 - L1MEg LINE L1 -1806 4340 4182 8 828 265 148 54 36 chr9 31932477 31932533 -92143639 - L1MD LINE L1 -2068 4078 4022 8 828 1332 98 32 21 chr9 31932533 31932721 -92143451 + B2_Mm2 SINE B2 1 190 -5 8 828 304 289 141 87 chr9 31932951 31933285 -92142887 - L1MEg LINE L1 -2451 3695 3344 8 828 247 286 29 0 chr9 31933470 31933540 -92142632 - ID_B1 SINE B4 -18 206 135 8 828 1001 259 94 15 chr9 31933520 31933812 -92142360 - MTEa LTR MaLR -4 355 58 8 828 28 48 0 0 chr9 31933814 31933856 -92142316 + AT_rich Low_complexity Low_complexity 1 42 0 8 828 230 247 80 34 chr9 31933919 31934007 -92142165 - B1_Mur4 SINE Alu -2 148 57 8 828 536 301 129 57 chr9 31934088 31934382 -92141790 - L1MEg LINE L1 -4604 1638 1308 8 828 782 198 180 6 chr9 31934382 31934565 -92141607 + B3 SINE B2 2 216 0 8 828 536 301 129 57 chr9 31934565 31934631 -92141541 - L1MEg LINE L1 -4935 1307 1248 8 828 1429 77 22 0 chr9 31934631 31934814 -92141358 - B2_Mm1t SINE B2 -5 188 2 8 828 536 301 129 57 chr9 31934814 31934871 -92141301 - L1MEg LINE L1 -4995 1247 1191 8 828 638 206 82 0 chr9 31935027 31935040 -92141132 - RSINE1 SINE B4 -4 161 146 8 828 366 80 0 0 chr9 31935040 31935090 -92141082 + (CACG)n Simple_repeat Simple_repeat 2 51 0 8 828 638 206 82 0 chr9 31935090 31935222 -92140950 - RSINE1 SINE B4 -20 145 5 8 828 262 265 69 62 chr9 31935224 31935369 -92140803 - L1MEg LINE L1 -5235 1007 862 8 828 391 291 194 0 chr9 31935622 31935756 -92140416 - RSINE1 SINE B4 -3 162 3 8 828 473 250 33 16 chr9 31936692 31936814 -92139358 - B4A SINE B4 -163 129 6 8 828 435 332 66 63 chr9 31937593 31937911 -92138261 - L2 LINE L2 -421 2998 2680 8 828 394 309 101 45 chr9 31939340 31939628 -92136544 - L2 LINE L2 -627 2792 2489 8 828 458 314 30 22 chr9 31939701 31939932 -92136240 - Cheshire DNA MER1_type -181 2239 2007 8 828 1082 278 90 25 chr9 31940001 31940480 -92135692 - Cheshire DNA MER1_type -394 2026 1517 8 828 1027 283 171 25 chr9 31940479 31940717 -92135455 - Cheshire DNA MER1_type -1214 1206 929 8 828 272 27 27 0 chr9 31940717 31940754 -92135418 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 8 828 1027 283 171 25 chr9 31940754 31941041 -92135131 - Cheshire DNA MER1_type -1492 928 605 8 828 462 304 17 75 chr9 31941210 31941384 -92134788 - RSINE1 SINE B4 0 165 2 8 828 537 211 58 0 chr9 31941384 31941488 -92134684 - RMER30 DNA MER1_type -91 111 2 8 828 1164 106 98 23 chr9 31941651 31941825 -92134347 - B2_Mm2 SINE B2 -8 187 1 8 828 617 268 64 125 chr9 31942041 31942386 -92133786 - MT2A LTR ERVL -190 343 20 8 828 1002 270 5 0 chr9 31943029 31943244 -92132928 + ID_B1 SINE B4 7 222 -2 8 828 1053 248 9 5 chr9 31943247 31943462 -92132710 + B3 SINE B2 1 216 0 8 828 2908 103 5 28 chr9 31943646 31944077 -92132095 - BGLII LTR ERVK 0 421 1 8 828 337 291 48 0 chr9 31944239 31944342 -92131830 + B4A SINE B4 29 136 -156 8 828 345 259 166 3 chr9 31944706 31944846 -92131326 + B4A SINE B4 115 285 -7 8 828 410 275 55 0 chr9 31944927 31945018 -92131154 + PB1 SINE Alu 21 116 -11 8 828 365 0 22 0 chr9 31945189 31945234 -92130938 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 828 205 374 33 11 chr9 31946365 31946457 -92129715 + L2a LINE L2 3058 3151 -275 8 828 1493 164 64 54 chr9 31946477 31946883 -92129289 - RMER17C LTR ERVK 0 410 1 8 828 392 198 28 111 chr9 31947120 31947228 -92128944 + MTC LTR MaLR 1 99 -320 8 828 488 246 84 44 chr9 31947275 31947500 -92128672 - RLTR15 LTR ERVK -68 291 58 8 828 526 241 452 8 chr9 31947583 31947820 -92128352 + MTC LTR MaLR 66 407 -12 8 828 958 264 35 28 chr9 31948190 31948475 -92127697 + B4A SINE B4 2 288 -4 8 828 228 214 0 0 chr9 31949245 31949301 -92126871 + CT-rich Low_complexity Low_complexity 3 58 0 8 828 409 114 190 0 chr9 31949312 31949391 -92126781 - B1_Mur2 SINE Alu -55 94 1 8 828 726 152 0 0 chr9 31950094 31950219 -92125953 + CT-rich Low_complexity Low_complexity 2 126 0 8 828 1048 269 82 41 chr9 31950238 31950579 -92125593 - ORR1D2 LTR MaLR -15 355 1 8 828 248 243 26 112 chr9 31950558 31950674 -92125498 - PB1D10 SINE Alu -2 115 10 8 828 2106 143 67 45 chr9 31950673 31950976 -92125196 - MTC LTR MaLR -10 411 96 8 828 1174 108 26 21 chr9 31950976 31951165 -92125007 - B2_Mm2 SINE B2 -3 192 3 8 828 2106 143 67 45 chr9 31951165 31951263 -92124909 - MTC LTR MaLR -326 95 1 8 828 1670 70 0 4 chr9 31951544 31951772 -92124400 - L1Md_F2 LINE L1 0 6582 6356 8 828 526 80 0 0 chr9 31951772 31951847 -92124325 + L1Md_F2 LINE L1 6281 6355 -227 8 828 620 295 103 17 chr9 31951878 31952178 -92123994 - MLT1E2 LTR MaLR -31 596 271 8 828 519 268 86 57 chr9 31952554 31952764 -92123408 + B3 SINE B2 1 216 0 8 828 25 0 0 0 chr9 31952845 31952870 -92123302 + AT_rich Low_complexity Low_complexity 1 25 0 8 828 378 239 45 9 chr9 31954357 31954467 -92121705 - RSINE1 SINE B4 -13 152 39 8 828 225 179 43 43 chr9 31955491 31955561 -92120611 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 8 828 7107 46 27 5 chr9 31955915 31956915 -92119257 - MusHAL1 LINE L1 -4 2708 1687 8 828 1741 219 131 38 chr9 31956915 31957441 -92118731 - RLTR26 LTR ERVK -67 575 1 8 828 448 291 39 86 chr9 31957769 31958002 -92118170 + Looper DNA PiggyBac 446 667 -891 8 828 485 99 12 0 chr9 31958133 31958214 -92117958 + (TC)n Simple_repeat Simple_repeat 2 83 0 8 828 252 0 0 0 chr9 31958215 31958243 -92117929 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 828 265 314 25 0 chr9 31958281 31958356 -92117816 + PB1D10 SINE Alu 24 106 -14 8 828 1158 62 7 0 chr9 31958557 31958702 -92117470 - B1_Mus2 SINE Alu -1 146 1 8 828 1571 42 11 0 chr9 31958930 31959119 -92117053 - B2_Mm2 SINE B2 -4 191 1 8 828 687 201 0 22 chr9 31959996 31960133 -92116039 - B1_Mur3 SINE Alu -15 134 1 8 828 1587 201 20 106 chr9 31961505 31961900 -92114272 - ORR1D1 LTR MaLR -9 365 5 8 828 300 237 38 50 chr9 31962011 31962091 -92114081 - HAL1-3A_ME LINE L1 -804 2054 1976 8 828 1152 197 13 4 chr9 31962567 31962801 -92113371 - Lx7 LINE L1 -893 6803 6568 8 828 236 303 79 44 chr9 31962801 31962915 -92113257 + MTEb LTR MaLR 262 379 0 8 828 522 266 441 32 chr9 31963201 31963464 -92112708 - ORR1D1 LTR MaLR -4 370 1 8 828 614 236 103 0 chr9 31963496 31963691 -92112481 - B3 SINE B2 -1 215 1 8 828 315 0 0 0 chr9 31963831 31963866 -92112306 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 8 828 806 324 80 98 chr9 31963869 31964002 -92112170 - MER44B DNA MER2_type -2 548 431 8 828 553 183 209 0 chr9 31964002 31964117 -92112055 - B1_Mur4 SINE Alu -9 141 3 8 828 806 324 80 98 chr9 31964117 31964534 -92111638 - MER44B DNA MER2_type -120 430 8 8 828 378 0 0 0 chr9 31965170 31965212 -92110960 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 828 549 0 0 0 chr9 31965212 31965272 -92110900 + (GA)n Simple_repeat Simple_repeat 1 61 0 8 828 22 35 0 0 chr9 31966090 31966119 -92110053 + AT_rich Low_complexity Low_complexity 1 29 0 8 828 527 283 8 24 chr9 31966517 31966640 -92109532 - 7SLRNA srpRNA srpRNA -133 181 61 8 828 288 0 0 0 chr9 31967106 31967138 -92109034 + (T)n Simple_repeat Simple_repeat 1 32 0 8 828 325 237 61 51 chr9 31967153 31967251 -92108921 - ID_B1 SINE B4 -4 220 122 8 828 257 356 9 71 chr9 31967648 31967760 -92108412 + MIRb SINE MIR 92 196 -72 8 828 552 30 0 0 chr9 31967824 31967890 -92108282 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 8 828 546 230 63 44 chr9 31967892 31968051 -92108121 - RSINE1 SINE B4 0 165 4 8 828 230 274 165 64 chr9 31968075 31968184 -92107988 - PB1 SINE Alu -7 120 1 8 828 236 259 69 0 chr9 31968608 31968666 -92107506 - LTR40b LTR ERVL -9 453 392 8 828 189 0 0 0 chr9 31968896 31968917 -92107255 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 8 828 531 112 0 0 chr9 31970269 31970349 -92105823 + (GGGA)n Simple_repeat Simple_repeat 3 82 0 8 828 1057 229 112 7 chr9 31970673 31970976 -92105196 - Lx9 LINE L1 -678 6966 6632 8 828 361 38 0 36 chr9 31971528 31971583 -92104589 + B1_Mus2 SINE Alu 2 54 -93 8 828 309 83 32 48 chr9 31971529 31971592 -92104580 + ID_B1 SINE B4 84 145 -79 8 828 363 240 0 0 chr9 31971597 31971697 -92104475 + GA-rich Low_complexity Low_complexity 2 101 0 8 828 271 214 65 43 chr9 31971702 31971795 -92104377 + RLTR25B LTR ERVK 415 509 -519 9 828 800 40 0 0 chr9 31971732 31971832 -92104340 + B1_Mus2 SINE Alu 42 141 -6 9 828 270 0 0 0 chr9 31971834 31971864 -92104308 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 9 828 189 107 0 0 chr9 31971866 31971894 -92104278 + (A)n Simple_repeat Simple_repeat 1 28 0 9 828 365 345 35 20 chr9 31972022 31972223 -92103949 - L1M4c LINE L1 -4505 1973 1770 9 828 363 253 42 120 chr9 31972451 31972710 -92103462 - L1M3 LINE L1 -726 5458 5208 9 828 1237 27 0 27 chr9 31972776 31972926 -92103246 - B1_Mus1 SINE Alu 0 148 3 9 828 697 244 21 74 chr9 31972970 31972990 -92103182 - B3 SINE B2 -34 182 164 9 828 252 122 0 0 chr9 31972990 31973031 -92103141 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 9 828 845 244 24 0 chr9 31973031 31973200 -92102972 - B3A SINE B2 -24 174 3 9 828 360 215 211 90 chr9 31973237 31973281 -92102891 - B1_Mur2 SINE Alu 0 149 115 9 828 971 163 109 38 chr9 31973281 31973491 -92102681 + URR1B DNA MER1_type 1 225 0 9 828 360 215 211 90 chr9 31973491 31973579 -92102593 - B1_Mur2 SINE Alu -35 114 1 9 828 574 293 70 29 chr9 31973649 31973993 -92102179 - L1M3 LINE L1 -1042 5098 4741 9 828 268 273 25 26 chr9 31974049 31974191 -92101981 - L1M3 LINE L1 -1532 4608 4471 9 828 960 280 88 21 chr9 31974515 31975142 -92101030 - L1M4c LINE L1 -4867 1517 849 9 828 22 0 0 0 chr9 31975146 31975168 -92101004 + AT_rich Low_complexity Low_complexity 1 22 0 9 828 1783 233 58 25 chr9 31975168 31975684 -92100488 - MT2A LTR ERVL 0 533 1 9 828 1187 101 39 6 chr9 31976923 31977103 -92099069 + B2_Mm1t SINE B2 2 187 -6 9 828 363 264 135 42 chr9 31977103 31977283 -92098889 - Charlie8 DNA MER1_type -2163 265 73 9 828 1067 178 96 0 chr9 31978230 31978427 -92097745 + URR1A DNA MER1_type 1 216 -10 9 828 202 316 0 87 chr9 31979864 31979968 -92096204 - MIRb SINE MIR -123 145 51 9 828 1958 191 144 83 chr9 31980147 31980674 -92095498 + RMER15 LTR ERVL 17 575 0 9 829 1209 283 68 15 chr9 31981652 31982119 -92094053 - Lx6 LINE L1 -24 7436 6945 9 829 1364 166 16 30 chr9 31982176 31982480 -92093692 - L1_Mur3 LINE L1 -2116 3761 3462 9 829 2992 188 50 14 chr9 31982844 31982877 -92093295 - L1_Mur3 LINE L1 -2405 3475 3439 9 829 459 0 0 0 chr9 31982877 31982928 -92093244 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 829 2992 188 50 14 chr9 31982928 31983672 -92092500 - L1_Mur3 LINE L1 -2442 3438 2672 9 829 541 269 83 0 chr9 31983672 31983865 -92092307 - B3 SINE B2 -7 209 1 9 829 1447 49 27 0 chr9 31983897 31984080 -92092092 + B2_Mm2 SINE B2 1 188 -7 9 829 473 284 93 32 chr9 31985165 31985412 -92090760 - L1MC2 LINE L1 -156 6177 5916 9 829 1234 41 0 0 chr9 31985510 31985657 -92090515 + B1_Mm SINE Alu 1 147 0 9 829 619 202 138 66 chr9 31985773 31985969 -92090203 + B3 SINE B2 1 210 -6 9 829 942 292 91 9 chr9 31986109 31986648 -92089524 - L1MC2 LINE L1 -507 5837 5255 9 829 614 245 205 29 chr9 31986652 31987072 -92089100 - L1MC2 LINE L1 -2471 3675 3182 9 829 253 278 14 0 chr9 31987096 31987168 -92089004 - L1MC2 LINE L1 -3341 2805 2733 9 829 619 227 86 59 chr9 31987407 31987594 -92088578 - B3 SINE B2 -3 192 1 9 829 1066 275 84 19 chr9 31988068 31988542 -92087630 - L1M2 LINE L1 -468 5823 5319 9 829 1258 245 106 21 chr9 31990336 31990665 -92085507 - ORR1E LTR MaLR -2 357 1 9 829 1755 265 45 35 chr9 31990665 31991146 -92085026 - ORR1E-int LTR MaLR -54 1526 1041 9 829 2275 281 36 62 chr9 31991220 31992172 -92084000 - Lx8 LINE L1 -122 7351 6425 9 829 924 116 0 52 chr9 31992280 31992292 -92083880 - B1_Mus1 SINE Alu 0 148 138 9 829 216 0 0 0 chr9 31992292 31992316 -92083856 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 9 829 1128 15 0 0 chr9 31992317 31992447 -92083725 + (TTTC)n Simple_repeat Simple_repeat 1 130 0 9 829 924 116 0 52 chr9 31992447 31992587 -92083585 - B1_Mus1 SINE Alu -11 137 2 9 829 988 322 77 21 chr9 31992587 31993052 -92083120 - ORR1E-int LTR MaLR -885 695 205 9 829 321 47 0 0 chr9 31993073 31993116 -92083056 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 829 297 279 33 146 chr9 31993116 31993267 -92082905 - ORR1E LTR MaLR -55 304 171 9 829 333 0 0 0 chr9 31993636 31993673 -92082499 + (TTA)n Simple_repeat Simple_repeat 2 38 0 9 829 359 232 117 4 chr9 31993689 31993782 -92082390 - PB1D9 SINE Alu -18 102 4 9 829 293 275 0 91 chr9 31993782 31993808 -92082364 - ID SINE ID -144 80 63 9 829 859 187 58 5 chr9 31994165 31994353 -92081819 - B3 SINE B2 -14 202 5 9 829 244 342 12 12 chr9 31994691 31994771 -92081401 + MIR SINE MIR 35 114 -148 9 829 440 300 40 7 chr9 31994946 31995097 -92081075 - RSINE1 SINE B4 -8 157 2 9 829 206 339 60 9 chr9 31995596 31995712 -92080460 + L2a LINE L2 3305 3426 0 9 829 237 159 0 0 chr9 31995818 31995862 -92080310 + (TAG)n Simple_repeat Simple_repeat 3 46 0 9 829 572 230 40 0 chr9 31996000 31996126 -92080046 + B1_Mur2 SINE Alu 2 132 -17 9 829 381 22 0 0 chr9 31996133 31996179 -92079993 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 9 829 33 56 0 0 chr9 31996273 31996327 -92079845 + AT_rich Low_complexity Low_complexity 1 54 0 9 829 706 339 11 0 chr9 31997117 31997297 -92078875 + B3 SINE B2 3 184 -32 9 829 245 272 112 75 chr9 31998470 31998657 -92077515 + MIR SINE MIR 62 255 -7 9 829 342 278 14 0 chr9 31998881 31998953 -92077219 + RSINE1 SINE B4 6 78 -87 9 829 646 313 18 0 chr9 31999370 31999533 -92076639 + B3A SINE B2 9 174 -24 9 829 21 36 0 0 chr9 31999623 31999651 -92076521 + AT_rich Low_complexity Low_complexity 1 28 0 9 829 611 183 59 67 chr9 31999669 31999804 -92076368 - B1_Mur1 SINE Alu -14 135 2 9 829 216 0 0 0 chr9 32000832 32000856 -92075316 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 829 1240 240 57 28 chr9 32000932 32001284 -92074888 - MLT1B LTR MaLR -1 389 28 2 829 338 291 141 58 chr9 32002485 32002630 -92073542 - L1MC2 LINE L1 -151 6193 6049 3 829 1577 47 5 0 chr9 32002630 32002822 -92073350 + B2_Mm1t SINE B2 1 193 0 4 829 338 291 141 58 chr9 32002822 32003158 -92073014 - L1MC2 LINE L1 -296 6048 5672 3 829 193 272 116 32 chr9 32003817 32003912 -92072260 + MER5A DNA MER1_type 87 189 0 5 829 1111 62 0 40 chr9 32004342 32004494 -92071678 + B1_Mus2 SINE Alu 2 147 0 6 829 180 0 0 0 chr9 32004494 32004514 -92071658 + (A)n Simple_repeat Simple_repeat 1 20 0 7 829 186 100 150 0 chr9 32004610 32004650 -92071522 - MIR SINE MIR -43 219 174 8 829 229 309 44 0 chr9 32004885 32004953 -92071219 + B4A SINE B4 2 72 -220 9 829 198 103 0 0 chr9 32005094 32005123 -92071049 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 829 353 329 153 12 chr9 32005610 32006034 -92070138 + L1ME1 LINE L1 4374 4857 -1289 1 829 440 293 69 28 chr9 32006117 32006405 -92069767 + L1ME1 LINE L1 4981 5280 -866 1 829 309 73 166 2 chr9 32006425 32006479 -92069693 + B1_Mm SINE Alu 79 137 -10 1 829 324 0 58 19 chr9 32006479 32006531 -92069641 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 829 204 97 0 0 chr9 32006566 32006597 -92069575 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 829 570 290 61 36 chr9 32006813 32007174 -92068998 + L1ME1 LINE L1 5629 5998 -181 1 829 737 258 52 41 chr9 32007675 32007728 -92068444 - B3 SINE B2 -1 215 153 1 829 432 37 0 0 chr9 32007728 32007782 -92068390 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 829 737 258 52 41 chr9 32007782 32007922 -92068250 - B3 SINE B2 -64 152 20 1 829 857 222 154 8 chr9 32008728 32009093 -92067079 - RCHARR1 DNA MER1_type -57 917 500 1 829 538 223 137 8 chr9 32009122 32009253 -92066919 - B1_Mur2 SINE Alu 0 149 2 1 829 5208 13 2 0 chr9 32009299 32009931 -92066241 - L1_Mm LINE L1 -2803 3080 2448 1 829 1107 245 62 145 chr9 32009932 32010366 -92065806 - RCHARR1 DNA MER1_type -520 454 57 1 829 201 138 0 0 chr9 32010447 32010476 -92065696 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2 829 1255 34 0 0 chr9 32010476 32010623 -92065549 - B1_Mus2 SINE Alu 0 147 1 2 829 227 301 41 0 chr9 32010944 32011017 -92065155 + L2 LINE L2 2308 2383 -1036 2 829 2880 86 5 9 chr9 32011774 32012196 -92063976 - BGLII LTR ERVK 0 421 2 2 829 732 303 157 6 chr9 32012543 32012855 -92063317 + MER63B DNA AcHobo 73 431 -5 2 829 201 39 0 0 chr9 32013219 32013245 -92062927 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 829 519 123 0 0 chr9 32013246 32013327 -92062845 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 829 258 285 186 7 chr9 32014302 32014447 -92061725 - MIR SINE MIR -1 261 91 2 829 277 286 26 0 chr9 32016142 32016219 -92059953 + ID_B1 SINE B4 79 157 -67 2 829 278 196 18 0 chr9 32016164 32016220 -92059952 + PB1D10 SINE Alu 21 77 -40 2 829 414 0 0 0 chr9 32016221 32016267 -92059905 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 829 275 316 26 9 chr9 32016573 32016688 -92059484 - PB1D10 SINE Alu 0 117 1 3 829 1161 55 0 0 chr9 32016715 32016860 -92059312 + B1_Mus2 SINE Alu 1 145 -2 3 829 235 204 0 0 chr9 32017418 32017472 -92058700 - L1MB8 LINE L1 -20 6164 6111 3 829 408 261 129 34 chr9 32017476 32017623 -92058549 + RSINE1 SINE B4 5 165 0 3 829 291 258 313 0 chr9 32017708 32017871 -92058301 - L1MB8 LINE L1 -128 6050 5837 3 829 237 193 18 0 chr9 32018358 32018415 -92057757 - Lx7 LINE L1 -411 5889 5832 3 829 228 163 23 0 chr9 32018418 32018461 -92057711 + MT2A LTR ERVL 2 45 -488 3 829 355 273 101 34 chr9 32018462 32018640 -92057532 - Lx7 LINE L1 -476 5821 5601 3 829 459 327 25 6 chr9 32018640 32018800 -92057372 - MTEa LTR MaLR 0 379 217 3 829 1897 171 104 5 chr9 32018806 32019182 -92056990 - MTC LTR MaLR -8 413 1 3 829 606 293 43 65 chr9 32019182 32019366 -92056806 - MTEa LTR MaLR -160 219 40 3 829 1017 284 101 89 chr9 32019366 32020189 -92055983 - Lx7 LINE L1 -762 5381 4501 3 829 1670 66 0 0 chr9 32020189 32020400 -92055772 - L1_Mus2 LINE L1 0 6566 6356 3 829 1017 284 101 89 chr9 32020400 32020639 -92055533 - Lx7 LINE L1 -1643 4500 4269 3 829 1575 21 21 5 chr9 32020639 32020828 -92055344 + B2_Mm1a SINE B2 2 193 0 4 829 1017 284 101 89 chr9 32020828 32020857 -92055315 - Lx7 LINE L1 -1875 4268 4263 3 829 905 103 14 14 chr9 32020857 32020995 -92055177 + B1_Mus1 SINE Alu 2 139 -9 4 829 225 0 0 0 chr9 32020995 32021020 -92055152 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 829 1017 284 101 89 chr9 32021020 32021432 -92054740 - Lx7 LINE L1 -1881 4262 3858 3 829 1667 168 155 17 chr9 32021454 32021818 -92054354 + MTD LTR MaLR 1 396 -23 4 829 1071 298 111 46 chr9 32021839 32022278 -92053894 - Lx7 LINE L1 -2115 3771 3338 3 829 1039 92 21 0 chr9 32022278 32022419 -92053753 - B1_Mus2 SINE Alu -2 145 2 4 829 1071 298 117 49 chr9 32022419 32023294 -92052878 - Lx7 LINE L1 -2806 3337 2388 3 829 366 330 14 9 chr9 32023844 32024055 -92052117 - L1MEg LINE L1 -1981 4340 4129 4 829 364 339 104 33 chr9 32025035 32025334 -92050838 - L1MEg LINE L1 -5110 1307 935 4 829 1148 88 0 0 chr9 32025680 32025827 -92050345 - B1_Mus2 SINE Alu 0 147 1 4 829 266 241 0 0 chr9 32025882 32025940 -92050232 - Lx8 LINE L1 -704 6769 6712 4 829 666 0 0 0 chr9 32025947 32026021 -92050151 + (TA)n Simple_repeat Simple_repeat 1 74 0 4 829 909 303 61 22 chr9 32026038 32026446 -92049726 + Lx8 LINE L1 6815 7238 -235 4 829 413 270 20 10 chr9 32026631 32026732 -92049440 + B3 SINE B2 109 210 -6 5 829 21 36 0 0 chr9 32026993 32027021 -92049151 + AT_rich Low_complexity Low_complexity 1 28 0 5 829 586 231 8 0 chr9 32027055 32027172 -92049000 - RSINE1 SINE B4 -47 118 1 5 829 204 339 0 0 chr9 32027757 32027819 -92048353 + CT-rich Low_complexity Low_complexity 3 64 0 5 829 1188 55 0 0 chr9 32027975 32028121 -92048051 + B1_Mus2 SINE Alu 2 147 0 5 829 1145 204 0 5 chr9 32028146 32028343 -92047829 + B3 SINE B2 2 197 -19 5 829 185 314 160 50 chr9 32028926 32029528 -92046644 - L2a LINE L2 -147 3279 2611 5 829 341 216 105 86 chr9 32029778 32029958 -92046214 - L1MC4a LINE L1 -9 7986 7714 5 829 1030 283 11 4 chr9 32030260 32030540 -92045632 - B4A SINE B4 -10 282 1 5 829 267 268 210 7 chr9 32030916 32031059 -92045113 + MIR SINE MIR 65 236 -26 5 829 405 58 0 0 chr9 32035701 32035753 -92040419 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 6 829 202 261 0 21 chr9 32036678 32036725 -92039447 + L2c LINE L2 3330 3375 -12 6 829 22 0 0 0 chr9 32037825 32037847 -92038325 + AT_rich Low_complexity Low_complexity 1 22 0 6 829 1349 69 26 5 chr9 32038068 32038257 -92037915 - B2_Mm2 SINE B2 -1 194 2 6 829 358 221 0 11 chr9 32038297 32038384 -92037788 - Lx9 LINE L1 -1246 6398 6313 6 829 483 100 0 0 chr9 32038526 32038596 -92037576 + (T)n Simple_repeat Simple_repeat 1 70 0 6 829 1188 55 7 0 chr9 32038596 32038742 -92037430 - B1_Mus2 SINE Alu 0 147 1 6 829 198 314 236 0 chr9 32038948 32039088 -92037084 - MIR SINE MIR -49 213 41 6 829 353 291 53 31 chr9 32039120 32039347 -92036825 + L1M5 LINE L1 4348 4579 -1567 6 829 1562 117 5 0 chr9 32040653 32040876 -92035296 - URR1B DNA MER1_type -1 224 1 6 829 612 308 25 72 chr9 32041114 32041474 -92034698 + Lx8 LINE L1 6932 7274 -199 7 829 396 0 0 0 chr9 32041587 32041631 -92034541 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 829 1125 64 0 0 chr9 32041660 32041801 -92034371 + B1_Mus2 SINE Alu 4 144 -3 7 829 204 125 0 0 chr9 32041809 32041841 -92034331 + (A)n Simple_repeat Simple_repeat 1 32 0 7 829 39 50 0 0 chr9 32041847 32041907 -92034265 + AT_rich Low_complexity Low_complexity 1 60 0 7 829 682 200 56 28 chr9 32043993 32044123 -92032049 + B1_Mur1 SINE Alu 2 137 -12 7 829 186 43 0 0 chr9 32044123 32044146 -92032026 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 829 682 200 56 28 chr9 32044146 32044159 -92032013 + B1_Mur1 SINE Alu 138 149 0 7 829 781 319 126 56 chr9 32044578 32045203 -92030969 - RMER13A LTR ERVK -160 700 32 7 829 219 196 21 21 chr9 32045394 32045441 -92030731 + RSINE1 SINE B4 4 50 -115 7 829 223 229 148 0 chr9 32045584 32045645 -92030527 + RSINE1 SINE B4 86 155 -10 7 829 358 292 61 15 chr9 32046324 32046456 -92029716 + B1F1 SINE Alu 1 138 -11 7 829 284 309 93 9 chr9 32048150 32048258 -92027914 - B1F2 SINE Alu -32 117 1 8 829 773 268 127 0 chr9 32048707 32048998 -92027174 + Lx8 LINE L1 6876 7203 -270 8 829 181 250 222 12 chr9 32049671 32049752 -92026420 - L2 LINE L2 -3287 132 35 8 829 24 32 0 0 chr9 32049995 32050026 -92026146 + AT_rich Low_complexity Low_complexity 1 31 0 8 829 211 176 0 0 chr9 32051092 32051126 -92025046 + polypyrimidine Low_complexity Low_complexity 3 36 0 8 829 547 140 13 40 chr9 32051313 32051462 -92024710 + GA-rich Low_complexity Low_complexity 2 146 0 8 829 314 308 95 29 chr9 32051469 32051606 -92024566 + HAL1-3A_ME LINE L1 2292 2437 -421 8 829 309 289 146 15 chr9 32052435 32052572 -92023600 - HAL1-3A_ME LINE L1 -419 2439 2285 8 829 185 226 19 0 chr9 32052572 32052625 -92023547 + CT-rich Low_complexity Low_complexity 3 56 0 8 829 436 275 58 7 chr9 32053074 32053213 -92022959 + RSINE1 SINE B4 4 149 -16 8 829 207 0 0 0 chr9 32054312 32054335 -92021837 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 829 799 228 43 38 chr9 32055445 32055655 -92020517 + B3 SINE B2 2 212 -4 9 829 2591 189 44 35 chr9 32056469 32057012 -92019160 + Lx5 LINE L1 6498 7045 -5 9 829 264 122 0 0 chr9 32057046 32057087 -92019085 + (A)n Simple_repeat Simple_repeat 1 41 0 9 829 233 250 95 0 chr9 32057117 32057201 -92018971 + MER5A DNA MER1_type 18 109 -80 9 829 486 0 0 0 chr9 32058613 32058667 -92017505 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 829 1085 67 22 0 chr9 32059268 32059403 -92016769 + B1_Mus1 SINE Alu 2 139 -9 9 829 1112 57 21 0 chr9 32059475 32059616 -92016556 - B1_Mus2 SINE Alu -2 145 2 9 829 966 166 32 27 chr9 32059618 32059804 -92016368 - B3 SINE B2 -29 187 1 9 829 3823 76 32 11 chr9 32060276 32060811 -92015361 - L1Md_F3 LINE L1 0 6584 6039 9 829 380 251 217 49 chr9 32060922 32060953 -92015219 + B3 SINE B2 1 31 -185 1 829 779 101 8 0 chr9 32060953 32061072 -92015100 + (TTCTC)n Simple_repeat Simple_repeat 4 123 0 1 829 380 251 217 49 chr9 32061072 32061083 -92015089 + B3 SINE B2 32 39 -177 1 829 789 95 26 0 chr9 32061083 32061199 -92014973 - PB1D9 SINE Alu -1 119 1 1 829 380 251 217 49 chr9 32061199 32061339 -92014833 + B3 SINE B2 40 214 -2 1 829 181 281 47 35 chr9 32062441 32062526 -92013646 - MIR SINE MIR -136 126 41 1 829 182 319 40 65 chr9 32072497 32072621 -92003551 + L2 LINE L2 2951 3071 -348 1 829 204 125 0 0 chr9 32073492 32073524 -92002648 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 829 306 0 0 0 chr9 32073524 32073558 -92002614 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 829 326 333 154 8 chr9 32073560 32073690 -92002482 - RSINE1 SINE B4 -14 151 3 1 829 499 296 49 70 chr9 32073962 32074147 -92002025 + B4A SINE B4 112 292 0 1 829 336 363 124 16 chr9 32074525 32074710 -92001462 + ORR1E LTR MaLR 1 205 -154 1 829 1028 278 34 11 chr9 32075034 32075303 -92000869 + B4A SINE B4 16 290 -2 1 829 521 303 30 0 chr9 32075348 32075480 -92000692 + B1F2 SINE Alu 1 136 -13 1 829 294 29 0 0 chr9 32075486 32075521 -92000651 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 1 829 22 35 0 0 chr9 32075666 32075695 -92000477 + AT_rich Low_complexity Low_complexity 1 29 0 1 829 276 379 75 35 chr9 32076146 32076373 -91999799 - MIR SINE MIR -7 255 20 1 829 481 328 111 45 chr9 32076766 32077050 -91999122 + B4 SINE B4 9 274 -18 1 829 277 94 0 54 chr9 32077378 32077434 -91998738 + (CCCCCT)n Simple_repeat Simple_repeat 6 58 0 1 829 568 202 301 0 chr9 32077466 32077629 -91998543 + B3 SINE B2 1 212 -4 1 829 214 347 53 0 chr9 32077775 32077870 -91998302 + L2a LINE L2 2951 3050 -325 1 829 237 301 60 56 chr9 32077924 32078099 -91998073 + L2a LINE L2 3193 3388 -38 1 829 396 0 0 0 chr9 32078419 32078463 -91997709 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 1 829 401 256 25 41 chr9 32080885 32081007 -91995165 - MLT1A1 LTR MaLR 0 408 289 1 829 261 0 0 0 chr9 32081885 32081914 -91994258 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 829 261 0 0 0 chr9 32081914 32081943 -91994229 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 829 236 342 0 0 chr9 32081943 32082016 -91994156 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 829 470 152 0 11 chr9 32082041 32082134 -91994038 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 829 408 258 167 13 chr9 32082521 32082749 -91993423 - HAL1 LINE L1 -864 1643 1381 1 829 615 230 153 11 chr9 32083295 32083484 -91992688 - B3 SINE B2 0 216 1 1 829 406 256 206 74 chr9 32083721 32083978 -91992194 + MLT1D LTR MaLR 114 404 -101 1 829 780 173 29 0 chr9 32084422 32084561 -91991611 + B1_Mur4 SINE Alu 3 145 -5 1 829 2262 233 17 35 chr9 32084673 32085193 -91990979 - Lx6 LINE L1 -4 7456 6946 1 829 1164 71 4 0 chr9 32085394 32085663 -91990509 + (TG)n Simple_repeat Simple_repeat 1 270 0 1 829 663 275 21 14 chr9 32085682 32085822 -91990350 - RSINE1 SINE B4 -22 143 3 1 829 991 266 53 108 chr9 32086273 32086670 -91989502 + MTE2a LTR MaLR 5 379 0 1 829 2512 216 59 129 chr9 32086754 32087767 -91988405 - RMER17B LTR ERVK -3 905 1 1 829 1047 213 18 54 chr9 32088043 32088068 -91988104 - B3 SINE B2 -1 215 196 1 829 2565 120 82 64 chr9 32088068 32088521 -91987651 - RMER6B LTR ERVK 0 461 1 1 829 1047 213 18 54 chr9 32088521 32088718 -91987454 - B3 SINE B2 -21 195 1 1 829 219 208 0 77 chr9 32090090 32090142 -91986030 + B3A SINE B2 2 49 -149 1 829 257 262 16 0 chr9 32090256 32090317 -91985855 + RSINE1 SINE B4 103 164 -1 1 829 311 355 71 5 chr9 32091251 32091435 -91984737 + MIR SINE MIR 67 262 0 1 829 578 244 35 109 chr9 32091902 32092132 -91984040 - B3 SINE B2 -3 213 1 1 829 309 51 0 0 chr9 32092143 32092182 -91983990 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 829 476 346 19 25 chr9 32092183 32092343 -91983829 - RSINE1 SINE B4 0 165 7 1 829 323 357 70 0 chr9 32092996 32093153 -91983019 - MER5A DNA MER1_type -19 170 3 1 829 1950 170 60 26 chr9 32093595 32093730 -91982442 + ORR1B1 LTR MaLR 1 151 -243 1 829 252 0 0 0 chr9 32093730 32093758 -91982414 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 829 1950 170 60 26 chr9 32093758 32094002 -91982170 + ORR1B1 LTR MaLR 152 393 -1 1 829 1500 79 0 0 chr9 32094333 32094868 -91981304 + (TG)n Simple_repeat Simple_repeat 1 535 0 1 829 410 288 31 25 chr9 32094869 32095029 -91981143 - RSINE1 SINE B4 0 165 5 1 829 415 260 46 138 chr9 32095092 32095288 -91980884 - MLT1A1 LTR MaLR -48 360 183 1 829 1363 226 108 111 chr9 32095766 32095838 -91980334 - RLTR20B1 LTR ERVK 0 563 451 1 829 315 0 0 0 chr9 32095838 32095873 -91980299 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 829 321 26 0 0 chr9 32095873 32095910 -91980262 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 829 1363 226 108 111 chr9 32095910 32096393 -91979779 - RLTR20B1 LTR ERVK -113 450 10 1 829 797 159 43 0 chr9 32096459 32096597 -91979575 - B1_Mus1 SINE Alu 0 148 5 1 829 1736 171 57 102 chr9 32096875 32097258 -91978914 + ORR1B2 LTR MaLR 2 367 0 1 829 227 291 55 55 chr9 32097318 32097372 -91978800 - RLTR41 LTR ERV1 -136 310 258 1 829 297 0 0 0 chr9 32097372 32097405 -91978767 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 829 227 291 55 55 chr9 32097405 32097459 -91978713 - RLTR41 LTR ERV1 -189 257 202 1 829 592 259 82 0 chr9 32097406 32097541 -91978631 - RSINE1 SINE B4 -18 147 2 1 829 277 309 74 0 chr9 32099569 32099650 -91976522 - B4 SINE B4 -205 87 1 1 829 837 294 71 40 chr9 32101838 32102164 -91974008 - MLT2D LTR ERVL 0 414 79 1 829 565 257 118 16 chr9 32103286 32103472 -91972700 + RMER5 LTR ERV1 330 534 0 1 829 1579 142 35 109 chr9 32104032 32104508 -91971664 - RMER17C LTR ERVK -519 439 16 1 829 313 335 71 12 chr9 32104933 32105102 -91971070 - Charlie16a DNA MER1_type -69 273 95 1 829 800 304 70 11 chr9 32105513 32105786 -91970386 + B4A SINE B4 1 289 -3 1 829 225 0 0 0 chr9 32105791 32105816 -91970356 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 829 935 204 198 11 chr9 32106131 32106397 -91969775 - MTC LTR MaLR 0 421 106 1 829 505 149 244 42 chr9 32106397 32106506 -91969666 + B1_Mus1 SINE Alu 1 136 -12 1 829 387 60 0 0 chr9 32106506 32106556 -91969616 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 829 572 0 15 0 chr9 32106557 32106625 -91969547 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 1 829 668 186 8 25 chr9 32106626 32106747 -91969425 - MTC LTR MaLR -300 119 1 1 829 368 364 50 46 chr9 32107546 32107805 -91968367 - LTR16B LTR ERVL -9 454 195 1 829 525 154 0 0 chr9 32108147 32108225 -91967947 - B1_Mur4 SINE Alu -37 113 36 1 829 276 225 92 81 chr9 32108156 32108243 -91967929 - MT2B LTR ERVL -345 256 169 1 829 1535 124 0 30 chr9 32108483 32108716 -91967456 - URR1A DNA MER1_type 0 226 1 1 829 682 294 91 85 chr9 32108751 32109104 -91967068 + ORR1E LTR MaLR 1 355 -4 1 829 501 231 45 96 chr9 32109260 32109437 -91966735 - MER53 DNA hAT -19 174 7 1 829 871 268 55 72 chr9 32109540 32109830 -91966342 - MLT1A LTR MaLR -33 341 57 1 829 363 154 0 0 chr9 32109869 32109934 -91966238 + (TATG)n Simple_repeat Simple_repeat 3 67 0 1 829 418 226 32 0 chr9 32110559 32110652 -91965520 - RSINE1 SINE B4 -29 136 41 1 829 185 259 130 0 chr9 32110738 32110792 -91965380 + L2 LINE L2 525 585 -2834 1 829 326 306 0 0 chr9 32111065 32111150 -91965022 + ORR1E LTR MaLR 52 136 -223 1 829 5242 64 0 1 chr9 32111261 32111919 -91964253 + L1Md_F2 LINE L1 5926 6582 0 1 830 189 237 0 0 chr9 32114343 32114381 -91961791 + L2b LINE L2 3099 3136 -239 1 830 270 0 0 0 chr9 32114443 32114473 -91961699 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 830 711 0 0 0 chr9 32114847 32114926 -91961246 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 830 313 143 92 75 chr9 32115198 32115372 -91960800 + (CAGG)n Simple_repeat Simple_repeat 3 179 0 1 830 352 156 106 43 chr9 32115393 32115554 -91960618 + (CAGG)n Simple_repeat Simple_repeat 3 173 0 1 830 339 181 99 37 chr9 32115603 32115764 -91960408 + (CAGG)n Simple_repeat Simple_repeat 3 173 0 1 830 373 361 0 0 chr9 32115712 32116414 -91959758 + (TAGGG)n Simple_repeat Simple_repeat 1 702 0 1 830 342 125 98 81 chr9 32116308 32116482 -91959690 + (CAGG)n Simple_repeat Simple_repeat 3 179 0 1 830 249 361 0 12 chr9 32116432 32116600 -91959572 + (TAGGG)n Simple_repeat Simple_repeat 4 169 0 1 830 351 113 111 70 chr9 32116602 32116774 -91959398 + (CAGG)n Simple_repeat Simple_repeat 1 179 0 1 830 25 31 0 0 chr9 32116982 32117014 -91959158 + AT_rich Low_complexity Low_complexity 1 32 0 1 830 581 110 45 28 chr9 32117066 32117243 -91958929 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 830 547 135 52 12 chr9 32117275 32117447 -91958725 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 830 203 121 69 0 chr9 32117483 32117541 -91958631 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 830 892 291 36 0 chr9 32117554 32117832 -91958340 - B4A SINE B4 -4 288 1 1 830 1178 70 0 0 chr9 32117892 32118034 -91958138 - B1_Mus1 SINE Alu -6 142 1 1 830 220 224 20 20 chr9 32118051 32118101 -91958071 + B1F2 SINE Alu 4 53 -96 1 830 1079 277 57 26 chr9 32118538 32118890 -91957282 + MLT1A0 LTR MaLR 3 365 0 1 830 311 221 34 34 chr9 32123061 32123178 -91952994 + (CA)n Simple_repeat Simple_repeat 1 117 0 1 830 385 164 43 0 chr9 32123214 32123330 -91952842 + (CA)n Simple_repeat Simple_repeat 1 121 0 1 830 1262 151 0 58 chr9 32123360 32123585 -91952587 + URR1A DNA MER1_type 15 226 0 1 830 340 261 86 1 chr9 32124211 32124314 -91951858 - PB1D10 SINE Alu -19 129 21 1 830 931 132 6 6 chr9 32125519 32125694 -91950478 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 1 830 1709 161 71 52 chr9 32125777 32125941 -91950231 + ORR1D1 LTR MaLR 1 163 -211 1 830 573 28 0 0 chr9 32125941 32126012 -91950160 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 830 1709 161 71 52 chr9 32126012 32126214 -91949958 + ORR1D1 LTR MaLR 164 373 -1 1 830 940 237 70 62 chr9 32128625 32128986 -91947186 + MTD LTR MaLR 1 405 -14 1 830 309 301 43 58 chr9 32129009 32129217 -91946955 - CYRA11_Mm Unknown Y-chromosome -241 376 172 1 830 930 169 11 23 chr9 32129042 32129218 -91946954 + URR1A DNA MER1_type 53 226 0 2 830 951 212 29 19 chr9 32130783 32130990 -91945182 - B3 SINE B2 -7 209 1 2 830 211 378 0 0 chr9 32131014 32131088 -91945084 + L2a LINE L2 3304 3377 -49 2 830 4735 109 3 23 chr9 32132616 32133321 -91942851 + L1_Mus3 LINE L1 5944 6634 -4 2 830 1442 253 60 38 chr9 32133449 32133848 -91942324 + MTD LTR MaLR 1 408 -11 2 830 745 264 49 66 chr9 32134808 32135051 -91941121 + MTEa LTR MaLR 1 239 -140 2 830 194 376 17 8 chr9 32135726 32135844 -91940328 - L2a LINE L2 -5 3421 3303 2 830 935 156 0 39 chr9 32136827 32136980 -91939192 + B1_Mm SINE Alu 1 147 0 2 830 1425 253 72 26 chr9 32137056 32137446 -91938726 + Lx7 LINE L1 6360 6767 -929 2 830 425 34 0 33 chr9 32137446 32137506 -91938666 + B1_Mus1 SINE Alu 3 60 -88 2 830 284 0 0 160 chr9 32137507 32137651 -91938521 + (CAGAG)n Simple_repeat Simple_repeat 5 125 0 2 830 293 212 55 78 chr9 32137652 32137780 -91938392 + RLTR25B LTR ERVK 397 521 -507 2 830 803 75 0 0 chr9 32137696 32137802 -91938370 + B1_Mm SINE Alu 42 147 0 2 830 408 125 0 0 chr9 32137802 32137866 -91938306 + (A)n Simple_repeat Simple_repeat 1 64 0 2 830 1362 258 29 54 chr9 32137878 32138320 -91937852 + Lx7 LINE L1 6764 7194 -502 2 830 1210 192 14 0 chr9 32138638 32138846 -91937326 + B3 SINE B2 1 211 -5 2 830 640 179 27 0 chr9 32140675 32140787 -91935385 + PB1D9 SINE Alu 5 119 -1 2 830 420 55 0 0 chr9 32140790 32140845 -91935327 + (CCAA)n Simple_repeat Simple_repeat 2 56 0 2 830 381 272 7 64 chr9 32142904 32143029 -91933143 - ID_B1 SINE B4 -94 198 81 2 830 215 219 0 0 chr9 32143972 32144013 -91932159 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 830 364 326 125 20 chr9 32144030 32144230 -91931942 - MIRb SINE MIR -45 223 3 2 830 186 224 20 39 chr9 32144865 32144916 -91931256 - L2 LINE L2 -1498 1921 1872 2 830 1961 143 26 63 chr9 32145960 32146386 -91929786 + RMER17C LTR ERVK 1 410 0 2 830 460 239 0 0 chr9 32146749 32146837 -91929335 - B3A SINE B2 -91 107 20 2 830 578 291 42 123 chr9 32146871 32147326 -91928846 + L1MD1 LINE L1 5597 6014 -228 2 830 642 189 97 15 chr9 32150280 32150414 -91925758 + B1_Mur1 SINE Alu 4 148 -1 2 830 212 212 15 0 chr9 32151934 32152000 -91924172 + C-rich Low_complexity Low_complexity 2 68 0 2 830 1726 173 82 15 chr9 32153459 32153799 -91922373 - MTC LTR MaLR -58 363 1 2 830 1136 320 136 22 chr9 32154959 32155461 -91920711 + Tigger7 DNA MER2_type 1 559 -1932 2 830 1073 276 30 67 chr9 32156216 32156620 -91919552 + MLT1B LTR MaLR 2 390 0 2 830 1505 201 119 36 chr9 32156631 32157018 -91919154 - MTD LTR MaLR 0 419 1 2 830 182 276 69 0 chr9 32157201 32157259 -91918913 + L2a LINE L2 3349 3410 -16 2 830 1240 55 0 0 chr9 32157441 32157587 -91918585 + B1_Mus2 SINE Alu 2 147 0 2 830 288 158 0 0 chr9 32157590 32157666 -91918506 + A-rich Low_complexity Low_complexity 3 78 0 2 830 360 0 0 0 chr9 32157973 32158013 -91918159 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 830 357 286 331 0 chr9 32158685 32158863 -91917309 - HAL1 LINE L1 -1555 952 716 2 830 204 158 0 0 chr9 32160508 32160546 -91915626 + C-rich Low_complexity Low_complexity 4 41 0 2 830 422 316 136 19 chr9 32160706 32160900 -91915272 - L1MC4 LINE L1 -4980 1235 1017 2 830 820 196 0 20 chr9 32160900 32161046 -91915126 - B1_Mur3 SINE Alu -6 143 1 2 830 422 316 136 19 chr9 32161046 32161095 -91915077 - L1MC4 LINE L1 -5199 1016 963 2 830 2892 69 0 6 chr9 32161095 32161460 -91914712 - L1_Mus2 LINE L1 0 6566 6204 2 830 422 316 136 19 chr9 32161460 32161473 -91914699 - L1MC4 LINE L1 -5253 962 950 2 830 1620 42 0 1 chr9 32161834 32164112 -91912060 + (TG)n Simple_repeat Simple_repeat 1 2276 0 2 830 2374 136 9 43 chr9 32164371 32164792 -91911380 - MTB_Mm LTR MaLR 0 407 1 2 830 328 294 78 16 chr9 32165169 32165297 -91910875 - MIRc SINE MIR -121 147 12 2 830 940 176 53 11 chr9 32165801 32165991 -91910181 + RLTR11A LTR ERVK 1 198 -330 2 830 5397 124 39 8 chr9 32165983 32166887 -91909285 - ORR1A3-int LTR MaLR -314 1649 718 2 830 842 122 0 109 chr9 32166846 32166993 -91909179 - MT2B LTR ERVL -314 287 157 2 830 3665 135 32 0 chr9 32166947 32167533 -91908639 - ORR1A3-int LTR MaLR -1187 605 1 2 830 488 87 14 0 chr9 32167533 32167602 -91908570 - ORR1A3 LTR MaLR 0 326 257 2 830 1106 77 14 0 chr9 32167602 32167745 -91908427 + B1_Mus1 SINE Alu 2 146 -2 2 830 405 0 0 0 chr9 32167786 32167831 -91908341 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 830 209 321 0 35 chr9 32167943 32168001 -91908171 + L3 LINE CR1 3909 3964 -525 2 830 666 188 27 51 chr9 32168366 32168531 -91907641 + RMER20B LTR ERVK 1 161 -355 2 830 303 267 86 8 chr9 32168673 32168790 -91907382 + RMER20A LTR ERVK 364 489 -27 2 830 858 154 0 0 chr9 32169330 32169479 -91906693 + GA-rich Low_complexity Low_complexity 1 149 0 2 830 325 238 12 24 chr9 32170113 32170195 -91905977 + ID2 SINE ID 2 82 -1 2 830 300 27 0 0 chr9 32170219 32170256 -91905916 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 830 325 246 64 43 chr9 32170353 32170493 -91905679 - HAL1 LINE L1 -293 2214 2072 2 830 357 234 39 0 chr9 32171132 32171209 -91904963 + Lx7 LINE L1 6434 6513 -1183 2 830 2346 132 93 5 chr9 32171209 32171596 -91904576 - MTC LTR MaLR 0 421 1 2 830 2517 186 41 4 chr9 32171598 32172061 -91904111 + Lx7 LINE L1 6511 6990 -706 2 830 670 224 73 63 chr9 32172062 32172267 -91903905 + Lx7 LINE L1 7199 7405 -291 2 830 3710 211 36 83 chr9 32172221 32173387 -91902785 - RMER1A Other Other -15 1015 31 2 830 180 0 0 0 chr9 32173520 32173540 -91902632 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 830 379 219 37 75 chr9 32173721 32173931 -91902241 + Lx7 LINE L1 7311 7692 -4 2 830 1835 197 50 6 chr9 32174029 32174387 -91901785 + ORR1D1 LTR MaLR 1 374 0 2 830 477 264 91 0 chr9 32174492 32174613 -91901559 + B1_Mur1 SINE Alu 18 149 0 2 830 326 132 0 135 chr9 32175132 32175228 -91900944 - HAL1 LINE L1 -1590 917 835 2 830 1100 98 0 6 chr9 32175582 32175747 -91900425 + (TCCCC)n Simple_repeat Simple_repeat 5 168 0 2 830 652 241 0 0 chr9 32175750 32175866 -91900306 - B1_Mur3 SINE Alu -31 118 3 2 830 464 247 39 112 chr9 32175866 32175968 -91900204 - MT2B LTR ERVL -446 155 69 2 830 878 331 34 53 chr9 32178318 32178698 -91897474 - MLT1A1 LTR MaLR 0 408 36 2 830 642 265 107 5 chr9 32178863 32179068 -91897104 - RMER15 LTR ERVL -3 572 347 2 830 528 244 50 50 chr9 32183924 32184105 -91892067 + B3A SINE B2 2 182 -16 2 830 252 0 0 0 chr9 32184540 32184568 -91891604 + (T)n Simple_repeat Simple_repeat 1 28 0 2 830 494 215 0 0 chr9 32187293 32187386 -91888786 - B1_Mur1 SINE Alu -21 128 36 2 830 293 207 12 0 chr9 32187455 32187537 -91888635 + (ATG)n Simple_repeat Simple_repeat 3 85 0 2 830 195 42 0 0 chr9 32187535 32187559 -91888613 + (GGA)n Simple_repeat Simple_repeat 2 25 0 2 830 275 308 22 88 chr9 32189410 32189638 -91886534 + Helitron1Nb_Mam RC Helitron 325 537 -579 2 830 732 43 0 0 chr9 32189706 32189798 -91886374 + (GGGA)n Simple_repeat Simple_repeat 4 95 0 2 830 887 195 0 0 chr9 32190168 32190317 -91885855 - B1_Mur3 SINE Alu 0 149 1 2 830 23 54 0 0 chr9 32190659 32190696 -91885476 + AT_rich Low_complexity Low_complexity 1 37 0 2 830 478 215 21 21 chr9 32190739 32190834 -91885338 - B3 SINE B2 -117 99 5 2 830 524 302 107 73 chr9 32191536 32192032 -91884140 - L1MB8 LINE L1 -9 6169 5657 2 830 292 178 80 27 chr9 32195680 32195755 -91880417 + MIRm SINE MIR 60 138 -138 2 830 682 180 85 8 chr9 32196150 32196279 -91879893 + B1_Mus1 SINE Alu 5 143 -5 2 830 459 130 0 0 chr9 32196297 32196374 -91879798 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 2 830 249 240 0 30 chr9 32196376 32196475 -91879697 + GA-rich Low_complexity Low_complexity 3 98 0 2 830 342 239 0 29 chr9 32197209 32197278 -91878894 - B4A SINE B4 -196 96 30 2 830 423 0 0 0 chr9 32197640 32197687 -91878485 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 830 273 340 75 0 chr9 32197899 32198005 -91878167 - MIRb SINE MIR -105 163 50 2 830 1072 144 121 29 chr9 32198485 32198692 -91877480 + URR1A DNA MER1_type 1 226 0 2 830 273 57 0 0 chr9 32198914 32198949 -91877223 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 830 208 278 37 0 chr9 32200556 32200610 -91875562 + L2c LINE L2 3273 3328 -59 2 830 378 0 0 0 chr9 32202748 32202790 -91873382 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 830 300 27 0 0 chr9 32202790 32202826 -91873346 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 830 260 261 62 102 chr9 32203244 32203372 -91872800 + MIRc SINE MIR 22 144 -124 2 830 819 299 55 63 chr9 32205827 32206046 -91870126 + B4A SINE B4 1 220 -72 2 830 801 206 151 11 chr9 32206046 32206232 -91869940 + B3 SINE B2 1 212 -4 2 830 819 299 55 63 chr9 32206232 32206283 -91869889 + B4A SINE B4 221 269 -23 2 830 333 0 0 0 chr9 32206283 32206320 -91869852 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 830 400 330 112 0 chr9 32208800 32209006 -91867166 - MIR SINE MIR -16 246 18 2 830 334 273 35 0 chr9 32209289 32209461 -91866711 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 830 203 138 0 0 chr9 32209607 32209636 -91866536 + (TTC)n Simple_repeat Simple_repeat 2 30 0 2 830 938 131 35 0 chr9 32209651 32209796 -91866376 + B1_Mur4 SINE Alu 1 150 0 2 830 472 181 29 43 chr9 32210596 32210735 -91865437 - L1MA7 LINE L1 0 6291 6155 2 830 573 214 56 0 chr9 32210766 32210892 -91865280 - B1_Mur3 SINE Alu -16 133 1 2 830 276 295 98 49 chr9 32213616 32213819 -91862353 + MIRc SINE MIR 53 265 -3 2 830 355 293 12 45 chr9 32214283 32214393 -91861779 + PB1 SINE Alu 18 118 -2 3 830 218 146 42 0 chr9 32214524 32214572 -91861600 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 3 830 513 84 0 0 chr9 32214613 32214684 -91861488 + (TCCA)n Simple_repeat Simple_repeat 4 74 0 3 830 232 338 0 14 chr9 32215373 32215445 -91860727 + MER5A DNA MER1_type 47 117 -72 3 830 324 70 0 0 chr9 32216454 32216497 -91859675 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 830 247 270 130 0 chr9 32217888 32217988 -91858184 - L2a LINE L2 -61 3365 3253 3 830 180 261 188 0 chr9 32218155 32218224 -91857948 + MIRb SINE MIR 116 197 -71 3 830 324 0 0 0 chr9 32218538 32218574 -91857598 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 830 898 304 15 22 chr9 32218574 32218843 -91857329 - B4 SINE B4 -23 269 3 3 830 350 326 38 76 chr9 32220600 32220889 -91855283 - LTR90B LTR LTR -8 788 511 3 830 577 294 28 82 chr9 32221773 32222092 -91854080 + L1MC4 LINE L1 6527 6828 -1214 3 830 372 310 84 52 chr9 32222332 32222676 -91853496 + L1MC4 LINE L1 7257 7611 -431 3 830 373 303 37 56 chr9 32222696 32222857 -91853315 + ID_B1 SINE B4 65 222 -2 3 830 294 351 15 0 chr9 32222967 32223101 -91853071 + L1MC4 LINE L1 7765 7900 -142 3 830 410 320 178 66 chr9 32223256 32223497 -91852675 - B4A SINE B4 -24 268 1 3 830 561 30 0 0 chr9 32223544 32223611 -91852561 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 830 607 274 122 61 chr9 32223611 32223856 -91852316 - B4A SINE B4 -32 260 1 3 830 186 299 176 39 chr9 32223972 32224125 -91852047 - MIRb SINE MIR -52 216 43 3 830 248 52 50 33 chr9 32224545 32224605 -91851567 + (CAAAAA)n Simple_repeat Simple_repeat 2 62 0 3 830 701 242 49 34 chr9 32225772 32225977 -91850195 + B3 SINE B2 3 210 -6 3 830 718 279 59 0 chr9 32226013 32226217 -91849955 - MER2 DNA MER2_type -3 342 127 3 830 33 43 0 0 chr9 32226240 32226287 -91849885 + AT_rich Low_complexity Low_complexity 1 47 0 3 830 775 261 126 58 chr9 32226708 32226828 -91849344 + MLT1A0 LTR MaLR 1 134 -231 3 830 576 77 0 0 chr9 32226828 32226906 -91849266 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 830 775 261 126 58 chr9 32226906 32227127 -91849045 + MLT1A0 LTR MaLR 135 365 0 3 830 425 280 28 128 chr9 32227528 32227708 -91848464 + B3 SINE B2 3 164 -52 3 830 381 102 0 0 chr9 32227708 32227767 -91848405 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 830 733 261 79 9 chr9 32228195 32228423 -91847749 - MER2 DNA MER2_type -26 319 76 3 830 774 248 16 39 chr9 32228420 32228620 -91847552 - B3A SINE B2 -11 205 3 3 830 509 322 48 77 chr9 32229374 32229663 -91846509 + B4 SINE B4 1 272 -20 3 830 411 21 0 0 chr9 32229670 32229718 -91846454 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 830 22 0 0 0 chr9 32230232 32230254 -91845918 + AT_rich Low_complexity Low_complexity 1 22 0 3 830 30 0 0 0 chr9 32230314 32230344 -91845828 + AT_rich Low_complexity Low_complexity 1 30 0 3 830 315 74 20 78 chr9 32230501 32230603 -91845569 + A-rich Low_complexity Low_complexity 2 97 0 3 830 22 35 0 0 chr9 32231189 32231218 -91844954 + AT_rich Low_complexity Low_complexity 1 29 0 3 830 738 184 41 28 chr9 32232002 32232138 -91844034 + B1_Mur3 SINE Alu 2 140 -9 3 830 340 52 17 33 chr9 32232138 32232198 -91843974 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 3 830 382 316 2 5 chr9 32232244 32232369 -91843803 - L1MA5 LINE L1 -10 6290 6161 3 830 1482 54 16 0 chr9 32232410 32232594 -91843578 + B2_Mm2 SINE B2 1 187 -8 3 830 384 257 162 14 chr9 32234089 32234231 -91841941 + MIR3 SINE MIR 40 202 -6 3 830 23 68 0 0 chr9 32234311 32234355 -91841817 + AT_rich Low_complexity Low_complexity 1 44 0 3 830 232 315 25 75 chr9 32234992 32235112 -91841060 + MIR3 SINE MIR 67 177 -31 3 830 1077 261 95 6 chr9 32235194 32235510 -91840662 - MER2 DNA MER2_type -1 344 1 3 830 703 326 31 59 chr9 32235915 32236205 -91839967 + B4A SINE B4 10 291 -1 3 830 207 139 0 27 chr9 32236266 32236303 -91839869 - L2a LINE L2 -273 3153 3118 3 830 225 0 0 0 chr9 32237290 32237315 -91838857 + (A)n Simple_repeat Simple_repeat 1 25 0 3 830 329 364 79 13 chr9 32237755 32237983 -91838189 + MIRc SINE MIR 11 253 -15 3 830 255 125 0 0 chr9 32238657 32238697 -91837475 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 3 830 2030 154 129 8 chr9 32239703 32240075 -91836097 - MTC LTR MaLR 0 421 5 3 830 234 323 80 29 chr9 32241069 32241206 -91834966 + L2a LINE L2 3265 3408 -18 3 830 194 364 26 0 chr9 32243250 32243327 -91832845 + MIR SINE MIR 48 126 -82 3 831 344 308 167 25 chr9 32244759 32245004 -91831168 - L2a LINE L2 0 3426 3110 3 831 196 317 17 155 chr9 32245904 32246143 -91830029 + MIRb SINE MIR 17 222 -46 3 831 654 126 0 0 chr9 32246194 32246297 -91829875 + (TG)n Simple_repeat Simple_repeat 1 103 0 3 831 730 291 32 144 chr9 32246314 32246627 -91829545 - B4A SINE B4 -9 283 6 3 831 1160 68 0 26 chr9 32246689 32246841 -91829331 - B1_Mus1 SINE Alu 0 148 1 3 831 276 30 0 0 chr9 32247611 32247644 -91828528 + (TAGG)n Simple_repeat Simple_repeat 3 35 0 3 831 297 0 0 0 chr9 32247644 32247677 -91828495 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 3 831 272 399 65 0 chr9 32247722 32247875 -91828297 - MER2 DNA MER2_type -1 344 182 3 831 306 149 203 0 chr9 32247953 32248027 -91828145 - MER2 DNA MER2_type -139 206 118 3 831 1401 196 126 15 chr9 32249536 32249877 -91826295 + MTE2b LTR MaLR 1 379 0 3 831 242 281 16 0 chr9 32249978 32250042 -91826130 + MIR SINE MIR 115 179 -83 3 831 830 106 8 0 chr9 32250087 32250219 -91825953 + (GAAA)n Simple_repeat Simple_repeat 2 134 0 3 831 249 108 0 0 chr9 32250219 32250256 -91825916 + (GGAGAA)n Simple_repeat Simple_repeat 4 40 0 3 831 531 45 0 0 chr9 32250497 32250563 -91825609 + (GGGGA)n Simple_repeat Simple_repeat 4 69 0 3 831 279 0 0 0 chr9 32251237 32251268 -91824904 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 831 255 164 0 0 chr9 32251728 32251789 -91824383 + CT-rich Low_complexity Low_complexity 2 62 0 3 831 23 0 0 0 chr9 32251815 32251838 -91824334 + AT_rich Low_complexity Low_complexity 1 23 0 3 831 747 165 0 0 chr9 32252000 32252176 -91823996 + (CA)n Simple_repeat Simple_repeat 2 177 0 3 831 268 237 109 54 chr9 32252361 32252508 -91823664 - L1MC5 LINE L1 -47 7914 7760 3 831 528 248 64 19 chr9 32253076 32253232 -91822940 + RSINE1 SINE B4 3 165 0 3 831 196 28 83 0 chr9 32253396 32253432 -91822740 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 3 831 579 304 88 77 chr9 32253848 32254201 -91821971 + ORR1E LTR MaLR 1 357 -2 3 831 937 29 0 0 chr9 32254409 32254513 -91821659 - U6 snRNA snRNA -3 104 1 3 831 292 269 125 15 chr9 32254565 32254701 -91821471 + MIRc SINE MIR 115 265 -3 3 831 181 309 218 22 chr9 32255283 32255462 -91820710 + MIRc SINE MIR 32 245 -23 3 831 347 243 47 37 chr9 32255787 32255894 -91820278 - L1MB3 LINE L1 -27 6156 6049 3 831 260 342 51 72 chr9 32256307 32256425 -91819747 - L1MA4 LINE L1 -15 6285 6170 3 831 616 297 115 19 chr9 32256425 32256686 -91819486 + B4A SINE B4 1 286 -6 3 831 260 342 51 72 chr9 32256686 32256731 -91819441 - L1MA4 LINE L1 -131 6169 6143 3 831 225 0 0 0 chr9 32256731 32256756 -91819416 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 831 260 342 51 72 chr9 32256756 32256925 -91819247 - L1MA4 LINE L1 -158 6142 5959 3 831 21 0 0 0 chr9 32257608 32257629 -91818543 + AT_rich Low_complexity Low_complexity 1 21 0 3 831 250 243 40 0 chr9 32258278 32258352 -91817820 + CT-rich Low_complexity Low_complexity 1 77 0 3 831 638 214 0 4 chr9 32258700 32258977 -91817195 + (TG)n Simple_repeat Simple_repeat 1 275 0 3 831 266 267 27 0 chr9 32258977 32259052 -91817120 - ID4_ SINE ID -6 77 1 3 831 246 32 0 0 chr9 32259260 32259291 -91816881 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 831 268 47 91 30 chr9 32259521 32259587 -91816585 + T-rich Low_complexity Low_complexity 5 74 0 3 831 21 0 0 0 chr9 32261575 32261596 -91814576 + AT_rich Low_complexity Low_complexity 1 21 0 3 831 450 0 0 0 chr9 32261761 32261811 -91814361 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 831 901 259 8 51 chr9 32261862 32262098 -91814074 - B4 SINE B4 -60 232 7 3 831 283 264 46 56 chr9 32262341 32262445 -91813727 + PB1D7 SINE Alu 14 119 -1 3 831 259 131 66 0 chr9 32262478 32262539 -91813633 + GA-rich Low_complexity Low_complexity 4 68 0 3 831 216 0 0 0 chr9 32262650 32262674 -91813498 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 831 320 289 0 13 chr9 32262796 32262873 -91813299 + polypyrimidine Low_complexity Low_complexity 5 80 0 3 831 817 267 9 9 chr9 32262873 32263096 -91813076 - ID_B1 SINE B4 0 224 2 3 831 260 34 100 17 chr9 32264854 32264914 -91811258 + A-rich Low_complexity Low_complexity 2 66 0 3 831 225 0 0 0 chr9 32264955 32264980 -91811192 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 831 622 312 0 0 chr9 32264984 32265128 -91811044 - RSINE1 SINE B4 -19 146 3 3 831 2644 144 5 5 chr9 32265741 32266160 -91810012 + RLTR16 LTR ERVK 1 419 -86 3 831 459 0 0 0 chr9 32266174 32266225 -91809947 + (TTTC)n Simple_repeat Simple_repeat 1 51 0 3 831 954 0 0 0 chr9 32266225 32266331 -91809841 + (TTTCC)n Simple_repeat Simple_repeat 4 109 0 3 831 324 0 0 0 chr9 32266333 32266369 -91809803 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 3 831 1220 81 0 0 chr9 32266369 32266529 -91809643 - B2_Mm2 SINE B2 -34 161 2 3 831 514 194 0 19 chr9 32266530 32266635 -91809537 + RLTR16 LTR ERVK 403 505 0 3 831 189 188 15 45 chr9 32269165 32269232 -91806940 + CT-rich Low_complexity Low_complexity 4 68 0 3 831 224 210 46 46 chr9 32269281 32269346 -91806826 + CT-rich Low_complexity Low_complexity 2 66 0 3 831 252 251 7 0 chr9 32269982 32270049 -91806123 + B1F1 SINE Alu 6 75 -45 3 831 546 16 0 0 chr9 32270050 32270113 -91806059 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 831 351 0 0 0 chr9 32270113 32270151 -91806021 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 831 190 276 33 33 chr9 32270228 32270288 -91805884 - L2c LINE L2 -200 3187 3128 4 831 198 270 51 63 chr9 32270651 32270730 -91805442 - MIRb SINE MIR -67 195 118 4 831 24 0 0 0 chr9 32271150 32271174 -91804998 + AT_rich Low_complexity Low_complexity 1 24 0 4 831 479 233 43 43 chr9 32272024 32272163 -91804009 + B1F SINE Alu 2 140 -9 4 831 183 80 0 0 chr9 32272168 32272193 -91803979 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 4 831 203 291 9 46 chr9 32275351 32275459 -91800713 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 831 261 102 0 48 chr9 32275578 32275640 -91800532 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 831 314 273 11 69 chr9 32275641 32275830 -91800342 + (CATA)n Simple_repeat Simple_repeat 3 180 0 4 831 513 76 0 0 chr9 32275911 32275990 -91800182 + (CA)n Simple_repeat Simple_repeat 1 79 0 4 831 541 272 43 43 chr9 32278493 32278669 -91797503 + B3 SINE B2 1 190 -26 4 831 222 37 0 0 chr9 32278682 32278709 -91797463 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 831 493 257 74 81 chr9 32278757 32279041 -91797131 - MER33 DNA MER1_type -34 290 9 4 831 455 307 0 95 chr9 32279182 32279351 -91796821 - RSINE1 SINE B4 -10 155 3 4 831 2597 284 70 6 chr9 32279410 32280223 -91795949 + Lx8 LINE L1 6356 7220 -253 4 831 225 254 0 0 chr9 32280476 32280531 -91795641 + CT-rich Low_complexity Low_complexity 2 56 0 4 831 198 143 0 0 chr9 32280538 32280573 -91795599 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 831 315 85 0 0 chr9 32280578 32280625 -91795547 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 831 214 341 63 28 chr9 32280703 32280845 -91795327 - B1_Mur3 SINE Alu 0 149 3 4 831 439 246 61 9 chr9 32280742 32280857 -91795315 - B4 SINE B4 -96 196 76 4 831 181 266 214 51 chr9 32282048 32282226 -91793946 - L2 LINE L2 -529 2890 2684 4 831 294 50 0 0 chr9 32284871 32284911 -91791261 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 831 1433 266 29 52 chr9 32285525 32285910 -91790262 + MLT1B LTR MaLR 1 376 -14 4 831 573 15 0 0 chr9 32287246 32287312 -91788860 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 831 211 333 26 26 chr9 32288850 32288927 -91787245 - MIRc SINE MIR -107 161 85 4 831 338 284 49 103 chr9 32289063 32289287 -91786885 + MIRb SINE MIR 29 240 -28 4 831 444 329 36 70 chr9 32289467 32289483 -91786689 + MLT2B2 LTR ERVL 219 232 -283 4 831 288 77 0 0 chr9 32289483 32289522 -91786650 + (CCA)n Simple_repeat Simple_repeat 1 39 0 4 831 444 329 36 70 chr9 32289522 32289806 -91786366 + MLT2B2 LTR ERVL 233 509 -6 4 831 255 271 17 0 chr9 32290223 32290282 -91785890 + L2a LINE L2 3367 3426 0 4 831 412 200 9 9 chr9 32290815 32290926 -91785246 + CT-rich Low_complexity Low_complexity 3 113 0 4 831 1362 301 36 11 chr9 32292582 32292942 -91783230 - MTEb LTR MaLR -10 369 1 4 831 417 321 59 118 chr9 32292942 32293214 -91782958 + MLT1G1 LTR MaLR 116 342 -237 4 831 426 256 0 0 chr9 32293313 32293391 -91782781 + B1_Mur4 SINE Alu 1 78 -72 4 831 486 0 0 0 chr9 32293396 32293450 -91782722 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 831 232 229 111 28 chr9 32293514 32293586 -91782586 - MIR SINE MIR -127 135 58 4 831 594 85 0 0 chr9 32293759 32293853 -91782319 + (TTGG)n Simple_repeat Simple_repeat 2 95 0 4 831 753 177 35 14 chr9 32293853 32293996 -91782176 - B1_Mur3 SINE Alu -3 146 1 4 831 389 222 18 44 chr9 32294032 32294145 -91782027 + PB1D10 SINE Alu 1 110 -7 4 831 192 376 92 17 chr9 32294192 32294311 -91781861 - MIRc SINE MIR -80 188 61 4 831 229 213 0 21 chr9 32294598 32294646 -91781526 + CT-rich Low_complexity Low_complexity 5 51 0 4 831 546 43 0 0 chr9 32295272 32295341 -91780831 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 831 297 0 0 0 chr9 32295341 32295373 -91780799 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 831 820 314 10 0 chr9 32295467 32295671 -91780501 - B4A SINE B4 -86 206 1 4 831 1039 172 107 10 chr9 32295772 32295977 -91780195 - URR1B DNA MER1_type 0 225 1 4 831 951 135 214 11 chr9 32297180 32297367 -91778805 + URR1A DNA MER1_type 1 225 -1 4 831 273 359 0 0 chr9 32298586 32298678 -91777494 + MIR SINE MIR 38 129 -133 4 831 345 306 32 40 chr9 32298933 32299059 -91777113 + MER94 DNA AcHobo 7 131 -3 4 831 565 183 13 43 chr9 32299763 32300005 -91776167 - RMER17B LTR ERVK -393 496 285 4 831 209 33 33 0 chr9 32300906 32300936 -91775236 + (TAA)n Simple_repeat Simple_repeat 2 32 0 4 831 240 315 0 42 chr9 32300936 32301023 -91775149 + MLT1A1 LTR MaLR 320 404 -4 4 831 181 280 40 0 chr9 32301242 32301292 -91774880 - L4 LINE RTE -1604 425 374 4 831 422 347 36 26 chr9 32302142 32302337 -91773835 + Tigger5 DNA MER2_type 44 240 -2166 4 831 207 224 41 0 chr9 32302961 32303010 -91773162 + C-rich Low_complexity Low_complexity 6 56 0 4 831 424 48 32 0 chr9 32303082 32303145 -91773027 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 831 423 277 8 43 chr9 32305162 32305279 -91770893 + B4A SINE B4 172 284 -8 4 831 258 273 85 68 chr9 32305554 32305672 -91770500 - PB1D7 SINE Alu 0 120 1 4 831 538 284 8 52 chr9 32305978 32306112 -91770060 - ID_B1 SINE B4 -58 166 39 4 831 191 36 36 0 chr9 32307486 32307514 -91768658 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 831 504 0 0 0 chr9 32308074 32308130 -91768042 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 831 237 333 0 0 chr9 32308168 32308231 -91767941 - MIR SINE MIR -59 149 87 4 831 468 0 0 0 chr9 32309568 32309620 -91766552 + (TTA)n Simple_repeat Simple_repeat 2 53 0 4 831 546 16 0 0 chr9 32310547 32310610 -91765562 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 831 472 315 186 0 chr9 32310737 32310931 -91765241 - B4 SINE B4 -45 247 18 4 831 351 241 0 0 chr9 32311013 32311092 -91765080 + BC1_Mm scRNA scRNA 3 81 -71 4 831 295 354 40 26 chr9 32311092 32311164 -91765008 + ID_B1 SINE B4 3 155 -69 4 831 208 234 57 86 chr9 32312748 32312818 -91763354 + MIRb SINE MIR 182 249 -19 4 831 558 234 251 71 chr9 32313274 32313470 -91762702 + B4A SINE B4 11 265 -27 4 831 579 15 0 0 chr9 32313470 32313538 -91762634 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 831 558 234 251 71 chr9 32313538 32313580 -91762592 + B4A SINE B4 266 292 0 4 831 188 148 48 16 chr9 32314854 32314916 -91761256 + GA-rich Low_complexity Low_complexity 1 64 0 4 831 417 323 16 16 chr9 32315574 32315703 -91760469 + MER63A DNA AcHobo 29 157 -53 4 831 415 311 162 25 chr9 32316068 32316266 -91759906 - MIRb SINE MIR -22 246 22 4 831 204 225 0 0 chr9 32317627 32317667 -91758505 + GA-rich Low_complexity Low_complexity 2 41 0 4 831 726 72 0 0 chr9 32317935 32318032 -91758140 + (TG)n Simple_repeat Simple_repeat 2 98 0 4 831 917 282 59 39 chr9 32319605 32319963 -91756209 + MLT1A0 LTR MaLR 1 365 0 4 831 694 306 0 18 chr9 32320204 32320424 -91755748 - B3 SINE B2 0 216 1 4 831 314 313 21 50 chr9 32321289 32321430 -91754742 + MER121 Unknown Unknown 242 378 -34 4 831 429 303 94 49 chr9 32322822 32323089 -91753083 + L1ME4a LINE L1 5810 6088 -36 4 831 699 224 24 0 chr9 32323298 32323503 -91752669 + (CCTG)n Simple_repeat Simple_repeat 1 209 0 4 831 637 246 0 22 chr9 32323434 32323617 -91752555 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 4 831 210 105 0 0 chr9 32325376 32325414 -91750758 + (C)n Simple_repeat Simple_repeat 1 38 0 4 831 248 137 20 0 chr9 32325780 32325831 -91750341 + (TGG)n Simple_repeat Simple_repeat 3 54 0 4 831 196 329 12 25 chr9 32328064 32328145 -91748027 + MIR SINE MIR 73 152 -110 4 831 216 0 0 0 chr9 32328469 32328493 -91747679 + (T)n Simple_repeat Simple_repeat 1 24 0 4 831 318 296 49 0 chr9 32329117 32329198 -91746974 + L2c LINE L2 3100 3184 -203 4 831 190 254 51 0 chr9 32329372 32329431 -91746741 - L2c LINE L2 -37 3350 3289 4 831 422 294 87 0 chr9 32330697 32330823 -91745349 + ID_B1 SINE B4 86 222 -2 4 831 24 0 0 0 chr9 32330971 32330995 -91745177 + AT_rich Low_complexity Low_complexity 1 24 0 4 831 216 289 11 108 chr9 32331022 32331115 -91745057 + PB1D10 SINE Alu 27 110 -7 4 831 263 290 91 27 chr9 32331118 32331228 -91744944 - MER3 DNA MER1_type -86 123 7 4 831 620 195 76 0 chr9 32331350 32331468 -91744704 + B1_Mur1 SINE Alu 13 139 -10 4 831 369 271 93 129 chr9 32331622 32331762 -91744410 + ORR1E LTR MaLR 26 160 -214 4 831 870 10 0 0 chr9 32332676 32332775 -91743397 + (TTC)n Simple_repeat Simple_repeat 2 100 0 4 831 1012 101 7 0 chr9 32332778 32332917 -91743255 - B1_Mus1 SINE Alu -7 141 2 4 831 309 118 0 0 chr9 32333919 32333970 -91742202 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 4 831 502 257 18 0 chr9 32333974 32334087 -91742085 - PB1D10 SINE Alu 0 117 3 4 831 188 287 102 85 chr9 32334163 32334281 -91741891 - MIR SINE MIR -89 173 54 4 831 282 56 0 0 chr9 32334305 32334341 -91741831 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 831 441 0 0 0 chr9 32334341 32334389 -91741783 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 831 217 367 14 86 chr9 32334957 32335097 -91741075 - MIRc SINE MIR -82 186 57 4 831 464 225 60 47 chr9 32335701 32335850 -91740322 - MER121 Unknown Unknown -185 227 77 5 831 235 314 78 0 chr9 32338022 32338124 -91738048 + B1F SINE Alu 37 146 -3 5 831 205 29 59 0 chr9 32338135 32338169 -91738003 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 831 777 283 29 79 chr9 32338712 32339027 -91737145 - MER121 Unknown Unknown -61 351 53 5 831 180 293 133 0 chr9 32339372 32339447 -91736725 - MIRm SINE MIR -157 119 35 5 831 369 305 61 46 chr9 32340004 32340200 -91735972 - L1M5 LINE L1 -614 5510 5312 5 831 257 222 127 0 chr9 32340279 32340342 -91735830 - ID4 SINE ID -1 82 12 5 831 1194 80 0 0 chr9 32340674 32340837 -91735335 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 5 831 218 182 18 35 chr9 32340908 32340965 -91735207 + (TGAA)n Simple_repeat Simple_repeat 4 59 0 5 831 260 342 25 0 chr9 32341889 32341968 -91734204 - ID4 SINE ID -1 82 2 5 831 472 293 0 24 chr9 32341973 32342099 -91734073 - ID_B1 SINE B4 -7 217 95 5 831 344 337 36 61 chr9 32342556 32342752 -91733420 + MIR SINE MIR 1 191 -77 5 831 406 321 22 15 chr9 32343221 32343357 -91732815 + ID_B1 SINE B4 88 224 0 5 831 497 294 71 75 chr9 32343361 32343629 -91732543 + B4 SINE B4 4 270 -22 5 831 745 107 0 13 chr9 32343646 32343797 -91732375 + (CA)n Simple_repeat Simple_repeat 2 150 0 5 831 186 71 0 0 chr9 32343798 32343826 -91732346 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 5 831 342 45 0 0 chr9 32343830 32343874 -91732298 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 831 180 77 0 0 chr9 32344151 32344177 -91731995 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 5 831 414 0 0 0 chr9 32344615 32344661 -91731511 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 831 312 262 67 10 chr9 32345585 32345642 -91730530 - MIRc SINE MIR -115 153 95 5 831 549 0 0 0 chr9 32345642 32345703 -91730469 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 831 312 262 67 10 chr9 32345703 32345749 -91730423 - MIRc SINE MIR -174 94 44 5 831 641 123 9 0 chr9 32347407 32347513 -91728659 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 831 552 36 0 35 chr9 32349058 32349144 -91727028 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 831 735 116 0 0 chr9 32349614 32349726 -91726446 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 5 831 215 150 0 24 chr9 32350464 32350505 -91725667 + CT-rich Low_complexity Low_complexity 2 41 0 5 831 195 42 0 0 chr9 32351105 32351129 -91725043 + (CCCCG)n Simple_repeat Simple_repeat 1 24 0 5 831 264 279 0 37 chr9 32351902 32351984 -91724188 + C-rich Low_complexity Low_complexity 5 83 0 5 831 189 175 0 0 chr9 32352692 32352732 -91723440 + G-rich Low_complexity Low_complexity 3 42 0 5 831 228 281 78 92 chr9 32353260 32353401 -91722771 - MamRep1879 DNA hAT? 0 216 78 5 831 186 43 0 0 chr9 32355555 32355578 -91720594 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 5 831 549 0 0 0 chr9 32356759 32356820 -91719352 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 5 831 232 200 0 57 chr9 32358826 32358879 -91717293 - ID_B1 SINE B4 -2 222 173 5 831 313 236 121 22 chr9 32358832 32358923 -91717249 - PB1D10 SINE Alu -8 109 10 5 831 1227 168 18 14 chr9 32358974 32359197 -91716975 - URR1A DNA MER1_type 0 226 3 5 831 387 0 0 0 chr9 32359841 32359884 -91716288 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 831 440 335 59 31 chr9 32360398 32360581 -91715591 + MLT1B LTR MaLR 1 178 -212 5 831 1228 41 0 7 chr9 32360581 32360729 -91715443 + B1_Mus2 SINE Alu 1 147 0 5 831 440 335 59 31 chr9 32360729 32360801 -91715371 + MLT1B LTR MaLR 179 262 -128 5 831 514 274 106 48 chr9 32360783 32360990 -91715182 + MLT1B LTR MaLR 164 382 -8 5 831 216 0 0 0 chr9 32361430 32361454 -91714718 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 831 318 87 0 0 chr9 32364346 32364392 -91711780 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 831 642 171 16 41 chr9 32364524 32364646 -91711526 - PB1D9 SINE Alu 0 120 2 5 831 240 359 30 0 chr9 32365435 32365566 -91710606 - L1MC4a LINE L1 -211 7784 7650 5 831 340 326 52 110 chr9 32365789 32366116 -91710056 - ORR1E LTR MaLR -51 308 1 5 831 216 135 0 0 chr9 32366177 32366214 -91709958 + (T)n Simple_repeat Simple_repeat 1 37 0 5 831 389 271 74 26 chr9 32366245 32366427 -91709745 - L1MC4a LINE L1 -733 7262 7076 5 831 314 234 91 0 chr9 32366430 32366523 -91709649 + B1F2 SINE Alu 2 109 -8 5 831 321 89 0 0 chr9 32366619 32366664 -91709508 + (CAT)n Simple_repeat Simple_repeat 1 45 0 5 831 273 241 0 0 chr9 32366926 32366980 -91709192 - ID_B1 SINE B4 0 224 171 5 831 516 16 0 0 chr9 32369772 32369833 -91706339 + (GGA)n Simple_repeat Simple_repeat 1 61 0 5 831 1141 261 14 27 chr9 32370902 32371197 -91704975 - B4A SINE B4 -1 291 1 5 831 314 299 174 75 chr9 32371218 32371431 -91704741 - HAL1-3A_ME LINE L1 -649 2209 1976 5 831 324 0 0 0 chr9 32371451 32371487 -91704685 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 831 313 358 32 51 chr9 32371579 32371735 -91704437 + MER20 DNA MER1_type 64 216 -3 5 831 208 130 0 42 chr9 32373359 32373407 -91702765 + A-rich Low_complexity Low_complexity 1 46 0 5 831 344 358 28 0 chr9 32373411 32373520 -91702652 + B1F2 SINE Alu 1 112 -37 5 831 219 78 19 38 chr9 32374523 32374576 -91701596 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 5 831 360 0 0 0 chr9 32374600 32374640 -91701532 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 832 615 212 0 0 chr9 32375956 32376107 -91700065 + (CA)n Simple_repeat Simple_repeat 2 152 0 5 832 331 203 69 69 chr9 32376616 32376775 -91699397 - Lx9 LINE L1 -9 7635 7477 5 832 1408 315 80 21 chr9 32376792 32377541 -91698631 - Lx9 LINE L1 -121 7523 6731 5 832 572 227 0 5 chr9 32377544 32377748 -91698424 + CT-rich Low_complexity Low_complexity 1 203 0 5 832 456 268 34 55 chr9 32377748 32377894 -91698278 - B1_Mur1 SINE Alu -6 143 1 5 832 642 287 140 58 chr9 32377903 32378195 -91697977 - MTEb LTR MaLR -14 365 50 5 832 22 35 0 0 chr9 32379991 32380020 -91696152 + AT_rich Low_complexity Low_complexity 1 29 0 5 832 724 169 8 0 chr9 32380048 32380172 -91696000 + B2_Mm2 SINE B2 59 183 -12 5 832 454 244 8 14 chr9 32380270 32380381 -91695791 - PB1D10 SINE Alu -5 115 3 5 832 267 279 0 0 chr9 32380631 32380699 -91695473 - ID4_ SINE ID -14 69 2 5 832 256 309 12 12 chr9 32380738 32380820 -91695352 - ID4_ SINE ID 0 83 2 5 832 503 262 36 48 chr9 32380950 32381118 -91695054 - B4A SINE B4 -9 283 118 5 832 531 270 0 0 chr9 32381150 32381261 -91694911 - PB1D9 SINE Alu -8 112 2 5 832 1326 78 0 0 chr9 32382121 32382301 -91693871 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 832 434 151 0 23 chr9 32382302 32382332 -91693840 + polypyrimidine Low_complexity Low_complexity 57 86 0 5 832 1296 84 0 0 chr9 32382332 32382511 -91693661 + (TTC)n Simple_repeat Simple_repeat 1 179 0 5 832 434 151 0 23 chr9 32382511 32382568 -91693604 + polypyrimidine Low_complexity Low_complexity 1 56 0 5 832 419 141 11 0 chr9 32382570 32382662 -91693510 + CT-rich Low_complexity Low_complexity 2 94 0 5 832 227 306 182 14 chr9 32383469 32383678 -91692494 - L2 LINE L2 -1320 2099 1856 5 832 2110 145 91 6 chr9 32383736 32384097 -91692075 - ORR1B1 LTR MaLR 0 394 3 5 832 214 153 89 89 chr9 32385388 32385467 -91690705 - L3 LINE CR1 -407 4082 4004 5 832 916 256 41 27 chr9 32385815 32386036 -91690136 - MTE2b LTR MaLR -155 224 1 5 832 961 356 100 35 chr9 32386183 32386492 -91689680 + MER21B LTR ERV1 149 453 -410 5 832 1729 154 167 0 chr9 32386492 32386804 -91689368 - ORR1B2 LTR MaLR -1 366 3 5 832 961 356 100 35 chr9 32386804 32387115 -91689057 + MER21B LTR ERV1 454 809 -54 5 832 209 325 11 65 chr9 32387356 32387448 -91688724 - L2b LINE L2 0 3375 3289 5 832 406 277 98 14 chr9 32387849 32387992 -91688180 + MIR SINE MIR 64 218 -44 5 832 459 0 0 0 chr9 32388006 32388057 -91688115 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 832 426 212 192 0 chr9 32388058 32388157 -91688015 - B1_Mm SINE Alu -21 126 9 5 832 257 259 177 65 chr9 32388066 32388190 -91687982 - MT2B LTR ERVL -339 262 125 5 832 586 219 43 7 chr9 32388180 32388318 -91687854 + MER115 DNA Tip100 551 693 0 5 832 423 0 0 0 chr9 32388942 32388989 -91687183 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 832 213 298 0 0 chr9 32390333 32390380 -91685792 - ID2 SINE ID -2 81 35 5 832 201 39 0 0 chr9 32390584 32390610 -91685562 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 5 832 456 19 0 0 chr9 32390613 32390666 -91685506 + (TCCA)n Simple_repeat Simple_repeat 3 55 0 5 832 219 114 0 0 chr9 32390962 32390997 -91685175 + (GGGTG)n Simple_repeat Simple_repeat 4 38 0 5 832 1480 30 0 0 chr9 32391859 32392027 -91684145 + L1Md_T LINE L1 5419 5586 -297 5 832 8204 53 0 0 chr9 32392027 32393023 -91683149 + L1Md_T LINE L1 5587 6582 0 5 832 186 43 0 0 chr9 32393031 32393054 -91683118 + (A)n Simple_repeat Simple_repeat 1 23 0 5 832 497 246 67 77 chr9 32393862 32393888 -91682284 - B2_Mm2 SINE B2 -3 192 167 5 832 800 43 267 0 chr9 32393888 32394004 -91682168 + B1_Mus2 SINE Alu 1 147 0 5 832 651 152 104 29 chr9 32394004 32394171 -91682001 - B3 SINE B2 -29 166 1 5 832 268 307 60 81 chr9 32394206 32394355 -91681817 - RSINE1 SINE B4 -17 148 3 5 832 624 27 0 0 chr9 32394582 32394656 -91681516 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 832 551 285 78 81 chr9 32394864 32395135 -91681037 + MLT2D LTR ERVL 4 273 -141 5 832 279 72 34 57 chr9 32396804 32396892 -91679280 + T-rich Low_complexity Low_complexity 2 87 0 5 832 845 297 116 25 chr9 32398189 32398586 -91677586 + L1MB1 LINE L1 5433 5865 -303 5 832 265 251 107 116 chr9 32398690 32398906 -91677266 + MIR SINE MIR 1 214 -54 5 832 624 27 0 0 chr9 32398920 32398994 -91677178 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 832 214 274 87 71 chr9 32400335 32400461 -91675711 + BC1_Mm scRNA scRNA 7 134 -18 6 832 194 275 84 36 chr9 32400596 32400679 -91675493 - MIRc SINE MIR -167 101 15 6 832 1431 50 0 0 chr9 32401082 32401262 -91674910 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 832 368 139 0 14 chr9 32401263 32401290 -91674882 + polypurine Low_complexity Low_complexity 2 27 0 6 832 1197 78 0 16 chr9 32401290 32401472 -91674700 + (GGA)n Simple_repeat Simple_repeat 1 179 0 6 832 368 139 0 14 chr9 32401472 32401517 -91674655 + polypurine Low_complexity Low_complexity 28 72 0 6 832 329 0 0 24 chr9 32401796 32401838 -91674334 + (TAA)n Simple_repeat Simple_repeat 1 41 0 6 832 303 28 0 0 chr9 32402578 32402614 -91673558 + (TTA)n Simple_repeat Simple_repeat 1 36 0 6 832 194 236 52 65 chr9 32403989 32404066 -91672106 - MIRb SINE MIR -68 200 125 6 832 10083 166 78 82 chr9 32405758 32406748 -91669424 - MERVL_2A-int LTR ERVL -3570 2191 1138 6 832 749 210 7 14 chr9 32406748 32406893 -91669279 + B1_Mur4 SINE Alu 6 149 -1 6 832 10083 166 78 82 chr9 32406893 32407958 -91668214 - MERVL_2A-int LTR ERVL -3570 1137 1 6 832 227 115 50 25 chr9 32409154 32409234 -91666938 + (CAAA)n Simple_repeat Simple_repeat 2 83 0 6 832 224 315 0 14 chr9 32409970 32410044 -91666128 + GA-rich Low_complexity Low_complexity 2 74 0 6 832 375 304 21 48 chr9 32411040 32411054 -91665118 + ID_B1 SINE B4 80 217 -4 6 832 660 234 8 0 chr9 32411054 32411182 -91664990 + B1F SINE Alu 14 142 -7 6 832 227 273 45 0 chr9 32411806 32411872 -91664300 + ID SINE ID 12 80 -144 6 832 187 274 67 27 chr9 32412446 32412521 -91663651 + L2b LINE L2 3295 3372 -3 6 832 213 338 159 67 chr9 32412841 32413168 -91663004 + L2b LINE L2 2961 3317 -58 6 832 263 274 48 0 chr9 32415670 32415732 -91660440 - ID4_ SINE ID -14 69 5 6 832 537 240 205 0 chr9 32415763 32415934 -91660238 + B3 SINE B2 11 216 0 6 832 400 262 48 24 chr9 32415957 32416082 -91660090 - B1F2 SINE Alu -1 148 21 6 832 845 256 82 124 chr9 32416834 32417271 -91658901 + MTD LTR MaLR 1 419 0 6 832 236 348 81 43 chr9 32417492 32417678 -91658494 - MIRb SINE MIR -37 231 39 6 832 942 148 0 0 chr9 32418798 32418974 -91657198 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 832 217 286 16 16 chr9 32419354 32419418 -91656754 + GA-rich Low_complexity Low_complexity 3 66 0 6 832 253 313 57 112 chr9 32421276 32421537 -91654635 + L2b LINE L2 3024 3283 -92 6 832 189 0 0 0 chr9 32422487 32422508 -91653664 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 832 730 291 39 78 chr9 32422514 32422719 -91653453 - ID_B1 SINE B4 -10 214 18 6 832 242 293 23 54 chr9 32422808 32422939 -91653233 - MIR SINE MIR -121 147 24 6 832 740 286 50 27 chr9 32423232 32423494 -91652678 + MER44A DNA MER2_type 8 275 -64 6 832 263 344 64 14 chr9 32425700 32425915 -91650257 + MIRb SINE MIR 2 239 -29 6 832 726 61 0 20 chr9 32428531 32428632 -91647540 + BC1_Mm scRNA scRNA 1 99 -53 6 832 710 206 30 204 chr9 32428632 32428669 -91647503 + ID SINE ID 1 87 -137 6 832 746 98 8 0 chr9 32428669 32428791 -91647381 + (TC)n Simple_repeat Simple_repeat 1 123 0 6 832 462 36 0 0 chr9 32428791 32428847 -91647325 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 832 710 206 30 204 chr9 32428847 32428976 -91647196 + ID_B1 SINE B4 88 221 -3 6 832 201 74 0 0 chr9 32429021 32429048 -91647124 + (CAA)n Simple_repeat Simple_repeat 3 29 0 6 832 290 210 108 24 chr9 32429337 32429420 -91646752 + B3A SINE B2 1 90 -108 6 832 346 197 0 40 chr9 32429434 32429508 -91646664 + RLTR28 LTR ERVL 454 524 0 6 832 296 296 69 46 chr9 32429508 32429618 -91646554 + B3 SINE B2 80 194 -22 6 832 501 17 0 0 chr9 32429618 32429676 -91646496 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 832 297 0 0 0 chr9 32429676 32429708 -91646464 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 832 207 313 8 17 chr9 32429727 32429844 -91646328 + A-rich Low_complexity Low_complexity 5 120 0 6 832 220 286 0 16 chr9 32429740 32429804 -91646368 + GA-rich Low_complexity Low_complexity 3 65 0 6 832 519 350 49 64 chr9 32430470 32430876 -91645296 - HAL1 LINE L1 -704 1803 1404 6 832 1290 105 124 5 chr9 32431649 32431850 -91644322 - URR1A DNA MER1_type -1 225 1 6 832 1299 270 50 40 chr9 32432817 32433218 -91642954 - MTD LTR MaLR -14 405 1 6 832 340 313 90 94 chr9 32433558 32433759 -91642413 - L3 LINE CR1 -62 4427 4228 6 832 576 0 0 0 chr9 32435183 32435247 -91640925 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 832 228 309 52 21 chr9 32435257 32435353 -91640819 + MER96B DNA hAT 164 262 -155 6 832 348 305 68 38 chr9 32436108 32436241 -91639931 - RSINE1 SINE B4 -28 137 1 6 832 286 348 0 0 chr9 32437458 32437527 -91638645 + ID4 SINE ID 10 78 -5 6 832 316 248 15 0 chr9 32437594 32437727 -91638445 + (TCCA)n Simple_repeat Simple_repeat 3 137 0 6 832 208 349 97 17 chr9 32439340 32439515 -91636657 - MIR SINE MIR -69 193 5 6 832 701 282 72 76 chr9 32440853 32441211 -91634961 + MTE2a LTR MaLR 18 383 -36 6 832 333 179 120 87 chr9 32441516 32441608 -91634564 - B4A SINE B4 0 292 198 6 832 717 264 36 6 chr9 32441780 32441948 -91634224 - B4A SINE B4 -88 204 32 6 832 404 150 12 0 chr9 32443471 32443551 -91632621 + CT-rich Low_complexity Low_complexity 4 84 0 6 832 237 132 0 0 chr9 32444671 32444709 -91631463 + (T)n Simple_repeat Simple_repeat 1 38 0 6 832 200 256 0 0 chr9 32446073 32446112 -91630060 + polypyrimidine Low_complexity Low_complexity 3 41 0 6 832 774 170 0 0 chr9 32447035 32447182 -91628990 + CT-rich Low_complexity Low_complexity 2 148 0 6 832 1320 84 45 0 chr9 32447298 32447476 -91628696 + B2_Mm2 SINE B2 1 186 -9 6 832 476 251 0 4 chr9 32448165 32448416 -91627756 + (TA)n Simple_repeat Simple_repeat 1 249 0 6 832 262 88 0 0 chr9 32448416 32448450 -91627722 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 832 459 29 43 0 chr9 32448757 32448826 -91627346 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 832 186 246 66 40 chr9 32449066 32449142 -91627030 - MIRb SINE MIR -81 187 110 6 832 440 303 47 21 chr9 32450247 32450439 -91625733 - B3A SINE B2 -1 197 1 6 832 465 19 0 0 chr9 32450498 32450552 -91625620 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 832 852 152 247 0 chr9 32451000 32451178 -91624994 - URR1B DNA MER1_type -3 222 1 6 832 186 245 37 19 chr9 32451551 32451605 -91624567 - L2c LINE L2 -64 3323 3269 6 832 328 281 0 22 chr9 32452474 32452565 -91623607 - PB1D10 SINE Alu -2 115 27 6 832 284 0 28 0 chr9 32453011 32453047 -91623125 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 832 414 0 0 0 chr9 32454334 32454380 -91621792 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 832 218 337 71 0 chr9 32455107 32455205 -91620967 + L2b LINE L2 3271 3375 0 6 832 452 177 21 0 chr9 32457553 32457649 -91618523 + URR1B DNA MER1_type 127 224 -1 6 832 366 61 0 0 chr9 32457656 32457705 -91618467 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 832 1471 173 57 12 chr9 32459010 32459343 -91616829 - RLTR15 LTR ERVK -11 348 1 6 832 329 275 28 48 chr9 32459344 32459489 -91616683 + RSINE1 SINE B4 11 152 -13 6 832 189 0 0 0 chr9 32459884 32459905 -91616267 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 832 586 286 0 47 chr9 32459905 32460096 -91616076 - B3A SINE B2 -16 182 1 6 832 254 264 108 27 chr9 32460201 32460275 -91615897 - ID4 SINE ID -1 82 3 6 832 227 304 28 38 chr9 32460299 32460405 -91615767 - PB1D10 SINE Alu -11 106 2 6 832 234 0 0 0 chr9 32460457 32460483 -91615689 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 832 420 20 0 0 chr9 32460483 32460531 -91615641 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 832 231 114 0 0 chr9 32460531 32460565 -91615607 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 832 2155 188 55 35 chr9 32460882 32461396 -91614776 - RLTR12B LTR ERVK -4 524 1 6 832 914 86 26 0 chr9 32462546 32462697 -91613475 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 6 832 880 281 93 44 chr9 32462899 32463242 -91612930 - MLT1A1 LTR MaLR -6 402 43 6 832 798 168 0 7 chr9 32463253 32463397 -91612775 + B1_Mur4 SINE Alu 5 147 -3 6 832 523 207 0 10 chr9 32463490 32463602 -91612570 - B1_Mur4 SINE Alu -1 119 14 6 832 305 335 87 19 chr9 32464913 32465074 -91611098 - MIR3 SINE MIR -13 195 24 6 832 298 299 56 119 chr9 32466148 32466399 -91609773 + MTE2a LTR MaLR 145 379 0 6 832 273 229 58 96 chr9 32466811 32466999 -91609173 + MER96B DNA hAT 69 249 -168 6 832 1670 195 70 22 chr9 32467416 32467879 -91608293 - RMER4A LTR ERVK -9 576 48 6 832 3074 147 15 36 chr9 32467954 32468538 -91607634 - RMER15 LTR ERVL -2 573 2 6 832 376 309 31 0 chr9 32468690 32468787 -91607385 - PB1D10 SINE Alu -17 100 1 6 832 372 295 49 24 chr9 32468834 32469012 -91607160 + MIRm SINE MIR 13 192 -76 6 832 472 303 74 42 chr9 32469634 32469917 -91606255 - B4A SINE B4 0 292 1 6 832 539 242 52 15 chr9 32470003 32470137 -91606035 - RSINE1 SINE B4 -16 149 11 6 832 498 149 0 0 chr9 32470137 32470224 -91605948 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 832 879 214 210 32 chr9 32470232 32470360 -91605812 - Lx9 LINE L1 -1 7643 7522 6 832 1426 59 0 46 chr9 32470360 32470555 -91605617 - B2_Mm2 SINE B2 -8 187 2 6 832 879 214 210 32 chr9 32470555 32470769 -91605403 - Lx9 LINE L1 -123 7521 7241 6 832 908 234 5 45 chr9 32471153 32471377 -91604795 - B3 SINE B2 0 216 2 7 832 261 361 76 8 chr9 32471388 32471519 -91604653 - MIRb SINE MIR -92 176 37 7 832 627 51 0 0 chr9 32472318 32472397 -91603775 + (GGA)n Simple_repeat Simple_repeat 1 79 0 7 832 369 0 0 0 chr9 32473150 32473191 -91602981 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 832 372 209 72 9 chr9 32474049 32474160 -91602012 - Lx5 LINE L1 0 7050 6933 7 832 1594 169 13 43 chr9 32474170 32474473 -91601699 + Lx5 LINE L1 6146 6439 -611 7 832 639 0 0 0 chr9 32476828 32476899 -91599273 + (GGA)n Simple_repeat Simple_repeat 2 72 0 7 832 208 239 0 112 chr9 32477014 32477094 -91599078 - MER5A DNA MER1_type -117 72 2 7 832 186 103 0 0 chr9 32478181 32478210 -91597962 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 832 273 143 71 0 chr9 32478233 32478289 -91597883 - B1F1 SINE Alu -7 142 83 7 832 196 177 16 31 chr9 32480588 32480652 -91595520 + CT-rich Low_complexity Low_complexity 2 64 0 7 832 1445 34 6 0 chr9 32481318 32481497 -91594675 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 832 210 37 0 0 chr9 32486541 32486568 -91589604 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 832 207 0 0 0 chr9 32486625 32486648 -91589524 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 7 832 2081 274 69 39 chr9 32486834 32487923 -91588249 - L1MB8 LINE L1 -73 6105 4976 7 832 217 336 52 32 chr9 32488214 32488368 -91587804 - MIRb SINE MIR -11 257 101 7 832 234 0 0 0 chr9 32489018 32489044 -91587128 + (T)n Simple_repeat Simple_repeat 1 26 0 7 832 360 0 0 0 chr9 32489231 32489271 -91586901 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 832 1389 61 0 0 chr9 32491243 32491423 -91584749 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 832 691 149 7 15 chr9 32491423 32491559 -91584613 + CT-rich Low_complexity Low_complexity 1 135 0 7 832 307 169 14 14 chr9 32491677 32491749 -91584423 + CT-rich Low_complexity Low_complexity 2 73 0 7 832 215 225 0 0 chr9 32491752 32491792 -91584380 - PB1D7 SINE Alu -9 111 72 7 832 597 232 54 66 chr9 32491823 32491989 -91584183 - RSINE1 SINE B4 -1 164 1 7 832 393 22 0 0 chr9 32492201 32492247 -91583925 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 832 773 79 9 0 chr9 32492413 32492527 -91583645 + (TCCA)n Simple_repeat Simple_repeat 4 118 0 7 832 274 302 13 157 chr9 32494742 32494797 -91581375 - ID_B1 SINE B4 -12 212 165 7 832 1298 241 98 11 chr9 32494797 32495145 -91581027 - MTE2b LTR MaLR -1 378 1 7 832 274 302 13 157 chr9 32495145 32495242 -91580930 - ID_B1 SINE B4 -60 164 82 7 832 183 205 0 0 chr9 32495832 32495871 -91580301 + (TATG)n Simple_repeat Simple_repeat 2 40 0 7 832 722 118 17 0 chr9 32495868 32495987 -91580185 + (CATATA)n Simple_repeat Simple_repeat 3 123 0 7 832 351 113 0 0 chr9 32497431 32497484 -91578688 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 7 832 22 0 0 0 chr9 32498746 32498768 -91577404 + AT_rich Low_complexity Low_complexity 1 22 0 7 832 180 0 0 0 chr9 32500035 32500055 -91576117 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 832 184 255 54 18 chr9 32500262 32500318 -91575854 - MIR SINE MIR -128 134 77 2 832 186 175 138 17 chr9 32501086 32501144 -91575028 + L2 LINE L2 1767 1831 -1588 3 832 200 259 3 0 chr9 32501386 32501436 -91574736 - L2a LINE L2 -5 3421 3332 4 832 180 0 0 0 chr9 32502893 32502913 -91573259 + (T)n Simple_repeat Simple_repeat 1 20 0 5 832 23 33 0 0 chr9 32503532 32503562 -91572610 + GC_rich Low_complexity Low_complexity 1 30 0 6 832 282 242 11 21 chr9 32503661 32503754 -91572418 + (CGAG)n Simple_repeat Simple_repeat 1 92 0 7 832 180 227 72 43 chr9 32504819 32504888 -91571284 - MIRm SINE MIR -102 174 104 8 832 234 91 0 0 chr9 32505770 32505803 -91570369 + (TTC)n Simple_repeat Simple_repeat 2 34 0 9 12 258 232 0 68 chr9 32505848 32505922 -91570250 + B1F SINE Alu 81 149 0 1 833 458 122 0 39 chr9 32506030 32506132 -91570040 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 833 515 266 65 0 chr9 32507421 32507560 -91568612 + MIR SINE MIR 6 153 -109 1 833 270 136 0 0 chr9 32510513 32510557 -91565615 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 1 833 405 0 0 0 chr9 32510707 32510752 -91565420 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 833 602 224 36 47 chr9 32511466 32511658 -91564514 + B3A SINE B2 2 191 -7 1 833 1222 230 32 19 chr9 32511952 32512283 -91563889 - Lx5 LINE L1 -8 7050 6671 1 833 186 176 0 0 chr9 32512720 32512771 -91563401 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 833 483 122 0 0 chr9 32512770 32512860 -91563312 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 833 216 290 93 65 chr9 32512860 32512967 -91563205 + MIR SINE MIR 19 128 -80 1 833 1198 61 0 0 chr9 32512968 32513115 -91563057 - B1_Mus2 SINE Alu 0 147 1 2 833 297 0 0 0 chr9 32514218 32514251 -91561921 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 833 224 220 0 0 chr9 32515075 32515134 -91561038 + T-rich Low_complexity Low_complexity 1 59 0 2 833 414 0 0 0 chr9 32515443 32515489 -91560683 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 833 219 174 21 21 chr9 32515714 32515761 -91560411 + G-rich Low_complexity Low_complexity 3 49 0 2 833 276 279 86 55 chr9 32516480 32516643 -91559529 - MIR SINE MIR -14 248 81 2 833 277 309 110 8 chr9 32517869 32517996 -91558176 + MIRc SINE MIR 68 207 -61 2 833 410 252 0 102 chr9 32519838 32519966 -91556206 - L1MB8 LINE L1 -63 6115 6001 2 833 283 227 66 13 chr9 32521399 32521475 -91554697 + MIR3 SINE MIR 106 185 -23 2 833 245 284 23 80 chr9 32523389 32523477 -91552695 - ID4 SINE ID 0 83 1 2 833 568 338 79 74 chr9 32524079 32524510 -91551662 + L3 LINE CR1 3308 3740 -749 3 833 26 0 0 0 chr9 32525445 32525471 -91550701 + AT_rich Low_complexity Low_complexity 1 26 0 3 833 233 287 63 90 chr9 32526176 32526287 -91549885 + MIRc SINE MIR 52 159 -109 3 833 253 289 13 0 chr9 32526636 32526712 -91549460 + ID4 SINE ID 3 79 -4 3 833 181 184 237 0 chr9 32527494 32527532 -91548640 + L2a LINE L2 3360 3406 -20 3 833 230 309 120 38 chr9 32530775 32530933 -91545239 - MER121 Unknown Unknown -123 289 119 3 833 216 135 0 0 chr9 32531541 32531578 -91544594 + (CACCAT)n Simple_repeat Simple_repeat 6 42 0 3 833 185 0 40 0 chr9 32532826 32532851 -91543321 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 833 549 0 0 0 chr9 32533205 32533266 -91542906 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 3 833 195 429 49 0 chr9 32533655 32533858 -91542314 + L2 LINE L2 2660 2872 -547 3 833 1880 321 95 9 chr9 32534018 32534056 -91542116 - Lx8 LINE L1 -2 7471 7436 4 833 411 119 0 0 chr9 32534056 32534123 -91542049 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 833 1880 321 95 9 chr9 32534123 32535048 -91541124 - Lx8 LINE L1 -38 7435 6425 4 833 624 240 154 84 chr9 32535070 32535402 -91540770 + L1_Mur3 LINE L1 4060 4414 -1466 4 833 322 295 52 10 chr9 32535505 32535601 -91540571 - MER5A DNA MER1_type -84 105 6 4 833 181 244 0 0 chr9 32535859 32535900 -91540272 + L2a LINE L2 3384 3424 -2 4 833 206 171 0 24 chr9 32537975 32538017 -91538155 + MIR SINE MIR 219 259 -3 4 833 21 0 0 0 chr9 32538039 32538060 -91538112 + AT_rich Low_complexity Low_complexity 1 21 0 4 833 258 367 89 0 chr9 32541228 32541397 -91534775 - MIRb SINE MIR -40 228 45 4 833 434 76 0 29 chr9 32547451 32547519 -91528653 + (GGGGA)n Simple_repeat Simple_repeat 4 69 0 4 833 236 330 64 55 chr9 32547653 32547762 -91528410 + MIR SINE MIR 16 125 -83 4 833 244 256 130 22 chr9 32549174 32549266 -91526906 - MIRm SINE MIR -82 194 93 5 833 476 249 94 22 chr9 32551772 32551953 -91524219 + MIR SINE MIR 63 256 -6 5 833 406 335 44 49 chr9 32552433 32552637 -91523535 - LTR16B LTR ERVL -169 294 92 5 833 291 161 0 0 chr9 32554725 32554781 -91521391 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 833 618 308 104 79 chr9 32556031 32556310 -91519862 + B4 SINE B4 1 286 -6 5 833 402 266 0 18 chr9 32556639 32556750 -91519422 + PB1D10 SINE Alu 1 109 -8 5 833 327 306 0 10 chr9 32556784 32556883 -91519289 + BC1_Mm scRNA scRNA 4 101 -51 5 833 263 278 46 8 chr9 32558189 32558277 -91517895 - PB1D10 SINE Alu -18 99 13 5 833 215 314 72 81 chr9 32558193 32558304 -91517868 - ID_B1 SINE B4 -48 176 67 5 833 279 245 56 47 chr9 32559882 32559989 -91516183 + MT2B LTR ERVL 156 263 -338 5 833 421 161 81 0 chr9 32559920 32560007 -91516165 + B1_Mur1 SINE Alu 34 127 -22 6 833 225 0 0 0 chr9 32560016 32560041 -91516131 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 6 833 694 316 59 22 chr9 32561136 32561540 -91514632 + L1MA5 LINE L1 5837 6255 -45 6 833 486 0 0 0 chr9 32561668 32561722 -91514450 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 833 21 0 0 0 chr9 32561773 32561794 -91514378 + AT_rich Low_complexity Low_complexity 1 21 0 6 833 180 0 0 0 chr9 32562325 32562345 -91513827 + (T)n Simple_repeat Simple_repeat 1 20 0 6 833 219 36 0 0 chr9 32564070 32564098 -91512074 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 833 22 0 0 0 chr9 32565099 32565121 -91511051 + AT_rich Low_complexity Low_complexity 1 22 0 6 833 225 270 32 0 chr9 32567496 32567559 -91508613 + MER102b DNA MER1_type 276 340 -1 6 833 201 74 0 0 chr9 32569135 32569162 -91507010 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 6 833 270 308 53 115 chr9 32569862 32570071 -91506101 + RMER30 DNA MER1_type 7 202 0 7 833 366 352 35 0 chr9 32571635 32571780 -91504392 + MIR SINE MIR 30 179 -83 7 833 428 365 78 23 chr9 32572754 32573228 -91502944 + Charlie7 DNA MER1_type 65 564 -2048 7 833 1868 192 25 3 chr9 32573282 32573647 -91502525 - ORR1C1 LTR MaLR -5 373 1 7 833 26 0 0 0 chr9 32573723 32573749 -91502423 + AT_rich Low_complexity Low_complexity 1 26 0 7 833 330 196 10 20 chr9 32573976 32574075 -91502097 + CT-rich Low_complexity Low_complexity 3 100 0 7 833 295 289 112 31 chr9 32574075 32574236 -91501936 + MTEb LTR MaLR 201 374 -5 7 833 218 57 57 0 chr9 32574394 32574429 -91501743 + (GGGAGA)n Simple_repeat Simple_repeat 6 42 0 7 833 255 278 14 27 chr9 32574505 32574579 -91501593 + C-rich Low_complexity Low_complexity 1 73 0 7 833 461 288 222 30 chr9 32576216 32576513 -91499659 + L1MEc LINE L1 578 931 -5469 7 833 732 156 14 43 chr9 32576562 32576703 -91499469 + B1_Mm SINE Alu 11 147 0 8 833 246 40 78 20 chr9 32576755 32576806 -91499366 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 833 348 334 116 19 chr9 32576843 32577267 -91498905 + L1MEc LINE L1 1018 1482 -4918 7 833 816 88 0 0 chr9 32577375 32577489 -91498683 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 8 833 374 278 80 74 chr9 32577604 32577767 -91498405 + RSINE1 SINE B4 2 165 0 8 833 426 309 171 36 chr9 32577767 32578129 -91498043 + L1MEc LINE L1 1527 1942 -4458 7 833 2714 28 28 0 chr9 32579578 32579896 -91496276 - IAPLTR2b LTR ERVK 0 327 1 8 833 366 284 101 21 chr9 32580072 32580309 -91495863 - L1MC3 LINE L1 -9 7776 7521 8 833 402 233 0 11 chr9 32580326 32580413 -91495759 - RSINE1 SINE B4 -68 97 12 8 833 233 229 193 0 chr9 32580415 32580498 -91495674 - L1MC3 LINE L1 -314 7471 7373 8 833 249 306 174 19 chr9 32580777 32580990 -91495182 + ORR1E LTR MaLR 1 246 -113 8 833 423 0 0 0 chr9 32581320 32581367 -91494805 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 833 282 306 95 74 chr9 32581550 32581875 -91494297 - L1MC LINE L1 -1019 5127 4796 8 833 308 316 76 6 chr9 32581987 32582159 -91494013 - L1M5 LINE L1 -1465 4681 4498 9 833 252 59 0 0 chr9 32583791 32583825 -91492347 + (CATA)n Simple_repeat Simple_repeat 4 37 0 9 833 1345 253 85 63 chr9 32584763 32585173 -91490999 + MTD LTR MaLR 1 419 0 9 833 844 323 98 37 chr9 32585261 32585923 -91490249 - Lx8 LINE L1 -89 7555 6716 9 833 184 0 0 88 chr9 32586888 32586922 -91489250 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 9 833 644 301 10 30 chr9 32587981 32588180 -91487992 + ID_B1 SINE B4 14 208 -16 9 833 423 0 0 0 chr9 32588193 32588240 -91487932 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 833 358 269 26 44 chr9 32588891 32589004 -91487168 - PB1D7 SINE Alu -8 112 2 9 833 2308 197 36 12 chr9 32589224 32589717 -91486455 - RLTR16 LTR ERVK 0 505 1 9 833 252 0 0 0 chr9 32591504 32591532 -91484640 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 833 523 293 60 0 chr9 32591533 32591666 -91484506 - RSINE1 SINE B4 -22 143 3 1 833 198 287 170 65 chr9 32592154 32592307 -91483865 - MIR SINE MIR -25 237 69 1 833 611 250 6 18 chr9 32593523 32593686 -91482486 + B4A SINE B4 108 268 -24 1 833 196 259 73 12 chr9 32594352 32594434 -91481738 - L2 LINE L2 -557 2862 2776 1 833 295 374 58 0 chr9 32596195 32596334 -91479838 + MIRc SINE MIR 17 163 -105 1 833 214 200 200 45 chr9 32598023 32598133 -91478039 - MIR SINE MIR -126 136 10 1 833 206 238 0 0 chr9 32598345 32598387 -91477785 - MIRb SINE MIR -46 222 181 1 833 456 19 0 0 chr9 32598390 32598443 -91477729 + (GGA)n Simple_repeat Simple_repeat 3 55 0 1 833 424 253 192 36 chr9 32598461 32598654 -91477518 + MER44D DNA MER2_type 2 224 -481 1 833 234 257 68 0 chr9 32598698 32598772 -91477400 + MER44D DNA MER2_type 626 704 -1 1 833 201 354 30 52 chr9 32599821 32599955 -91476217 - MIR SINE MIR -104 158 28 1 833 207 296 12 12 chr9 32599979 32600061 -91476111 + (TTCA)n Simple_repeat Simple_repeat 3 84 0 1 833 483 133 209 0 chr9 32600287 32600392 -91475780 - Lx9 LINE L1 -207 7437 7311 1 833 674 226 23 0 chr9 32600402 32600535 -91475637 + Lx9 LINE L1 6341 6476 -1168 1 833 523 337 40 53 chr9 32600818 32601119 -91475053 - MER20B DNA MER1_type -370 413 117 1 833 790 190 191 22 chr9 32601777 32601960 -91474212 + B3 SINE B2 3 216 0 1 833 806 294 99 35 chr9 32602446 32602848 -91473324 + LTR79 LTR ERVL 81 508 -19 1 833 435 296 0 0 chr9 32603045 32603143 -91473029 + MER58A DNA MER1_type 27 124 -100 1 833 340 292 0 20 chr9 32604341 32604439 -91471733 - PB1D10 SINE Alu -21 96 1 1 833 313 324 75 6 chr9 32604736 32604910 -91471262 + MLT2B4 LTR ERVL 6 191 -365 1 833 321 89 0 0 chr9 32605155 32605200 -91470972 + (CTAA)n Simple_repeat Simple_repeat 1 45 0 1 833 24 0 0 0 chr9 32605387 32605411 -91470761 + AT_rich Low_complexity Low_complexity 1 24 0 1 833 459 0 0 0 chr9 32605574 32605625 -91470547 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 833 478 265 6 94 chr9 32605758 32605929 -91470243 - B4A SINE B4 -116 176 21 1 833 3434 25 5 0 chr9 32606049 32606443 -91469729 + MTA_Mm LTR MaLR 1 396 0 1 833 8400 30 7 18 chr9 32606634 32607712 -91468460 - L1Md_F2 LINE L1 0 6582 5519 1 833 2068 180 31 38 chr9 32607780 32608202 -91467970 - MTD LTR MaLR 0 419 1 1 833 216 0 0 0 chr9 32608305 32608329 -91467843 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 833 738 308 126 7 chr9 32608875 32609326 -91466846 - L1MA5 LINE L1 -34 6266 5762 1 833 1230 34 7 0 chr9 32609369 32609515 -91466657 + B1_Mus2 SINE Alu 1 147 0 1 833 252 79 15 60 chr9 32609516 32609583 -91466589 + A-rich Low_complexity Low_complexity 3 66 0 1 833 591 184 52 82 chr9 32610665 32610896 -91465276 - Lx9 LINE L1 0 7644 7421 1 833 251 256 33 22 chr9 32610897 32610989 -91465183 + (TATG)n Simple_repeat Simple_repeat 3 95 0 1 833 549 221 125 23 chr9 32610999 32611175 -91464997 - Lx9 LINE L1 -127 7517 7324 1 833 328 78 15 30 chr9 32612181 32612247 -91463925 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 1 833 5784 48 0 3 chr9 32614356 32615025 -91461147 - L1_Mus1 LINE L1 -6 6561 5895 1 833 1318 84 0 0 chr9 32615021 32615188 -91460984 + L1_Mus1 LINE L1 6394 6560 -7 1 833 23 33 0 0 chr9 32615188 32615218 -91460954 + AT_rich Low_complexity Low_complexity 1 30 0 1 833 32635 104 8 23 chr9 32616054 32621949 -91454223 - L1_Mus1 LINE L1 -330 6237 436 1 833 303 50 16 62 chr9 32622457 32622521 -91453651 + (CAAAAA)n Simple_repeat Simple_repeat 5 65 0 1 833 185 333 93 28 chr9 32624184 32624292 -91451880 - MIR SINE MIR -62 146 32 1 833 543 179 0 0 chr9 32624896 32625036 -91451136 + CT-rich Low_complexity Low_complexity 1 140 0 1 833 627 293 79 25 chr9 32625985 32626262 -91449910 - B4A SINE B4 0 292 1 1 833 989 269 0 0 chr9 32626517 32626733 -91449439 + B3 SINE B2 1 216 0 1 833 711 336 64 38 chr9 32628706 32629049 -91447123 - MT2A LTR ERVL -179 354 3 1 833 457 274 28 77 chr9 32629091 32629273 -91446899 - B4A SINE B4 -117 175 3 1 833 987 296 64 15 chr9 32629718 32630047 -91446125 - MER2 DNA MER2_type 0 345 1 1 833 261 0 0 0 chr9 32630511 32630540 -91445632 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 833 192 336 45 36 chr9 32630787 32630898 -91445274 + MIRm SINE MIR 165 276 0 1 833 478 339 70 0 chr9 32630909 32631080 -91445092 + L3 LINE CR1 4294 4476 -13 1 833 233 57 29 0 chr9 32632340 32632375 -91443797 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 833 660 279 0 0 chr9 32633032 32633172 -91443000 - B1_Mur1 SINE Alu -9 140 1 1 833 544 354 0 0 chr9 32633644 32633822 -91442350 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 833 334 330 11 33 chr9 32633758 32633940 -91442232 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 1 833 387 0 0 0 chr9 32633950 32633993 -91442179 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 833 564 286 75 39 chr9 32634065 32634375 -91441797 - L1M4 LINE L1 -492 5686 5363 1 833 781 296 45 111 chr9 32635500 32635834 -91440338 - MLT2B3 LTR ERVL -192 362 51 1 833 972 285 218 0 chr9 32636160 32636486 -91439686 - Lx8 LINE L1 -280 7193 6797 1 104 2263 196 24 39 chr9 32636554 32637048 -91439124 - Lx7 LINE L1 0 7696 7210 1 834 180 315 56 0 chr9 32637050 32637104 -91439068 + L2c LINE L2 3104 3160 -227 1 834 258 81 0 0 chr9 32637752 32637789 -91438383 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1 834 247 65 43 0 chr9 32638413 32638459 -91437713 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 834 188 336 46 18 chr9 32638962 32639071 -91437101 - MIRm SINE MIR -12 264 153 1 834 468 0 0 0 chr9 32639115 32639167 -91437005 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 834 246 62 0 0 chr9 32640581 32640613 -91435559 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1 834 312 358 27 64 chr9 32641156 32641344 -91434828 + MER115 DNA Tip100 137 317 -376 1 834 491 295 90 41 chr9 32641548 32641792 -91434380 + MER44A DNA MER2_type 1 256 -83 1 834 253 267 0 39 chr9 32642286 32642364 -91433808 + MIRb SINE MIR 87 161 -101 1 834 647 252 21 0 chr9 32644980 32645123 -91431049 + B3 SINE B2 66 211 -5 1 834 192 40 0 0 chr9 32645303 32645328 -91430844 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 834 1284 41 7 0 chr9 32645330 32645476 -91430696 - B1_Mus1 SINE Alu 0 148 2 1 834 2213 128 19 3 chr9 32645487 32645809 -91430363 - ORR1A2 LTR MaLR 0 327 1 1 834 244 313 9 57 chr9 32646019 32646124 -91430048 + PB1D10 SINE Alu 5 104 -13 1 834 224 310 100 1 chr9 32646134 32646245 -91429927 + MIR SINE MIR 41 173 -103 1 834 3320 16 5 8 chr9 32646896 32647264 -91428908 - IAPLTR1_Mm LTR ERVK 0 367 1 1 834 56083 22 16 15 chr9 32647264 32653728 -91422444 - IAPEz-int LTR ERVK 0 6481 8 1 834 3320 16 5 8 chr9 32653728 32654096 -91422076 - IAPLTR1_Mm LTR ERVK 0 367 1 1 834 533 15 15 0 chr9 32654346 32654412 -91421760 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 834 352 328 46 57 chr9 32654690 32654884 -91421288 - B3A SINE B2 -1 197 6 1 834 26 0 0 0 chr9 32654966 32654992 -91421180 + AT_rich Low_complexity Low_complexity 1 26 0 1 834 180 125 0 0 chr9 32655287 32655319 -91420853 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 834 1017 275 98 30 chr9 32655348 32655685 -91420487 - MLT1B LTR MaLR -30 360 1 1 834 203 203 17 0 chr9 32655805 32655864 -91420308 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 834 377 311 19 37 chr9 32656398 32656505 -91419667 - PB1D10 SINE Alu -8 109 5 1 834 341 322 26 0 chr9 32656529 32656644 -91419528 - PB1 SINE Alu -9 118 1 1 834 627 322 137 0 chr9 32657325 32657580 -91418592 - B4A SINE B4 -2 290 1 1 834 313 301 107 67 chr9 32657829 32658007 -91418165 - MLT1L LTR MaLR -264 346 162 1 834 25 65 0 0 chr9 32659164 32659210 -91416962 + AT_rich Low_complexity Low_complexity 1 46 0 1 834 1175 77 28 0 chr9 32659304 32659447 -91416725 + B1_Mus2 SINE Alu 1 147 0 1 834 216 0 0 0 chr9 32659447 32659471 -91416701 + (A)n Simple_repeat Simple_repeat 1 24 0 1 834 326 208 30 0 chr9 32660953 32661054 -91415118 + (ATGTG)n Simple_repeat Simple_repeat 1 104 0 1 834 574 328 51 51 chr9 32661088 32661419 -91414753 + MLT1A LTR MaLR 40 370 -4 1 834 258 346 37 0 chr9 32662416 32662523 -91413649 + L2a LINE L2 2975 3085 -341 1 834 187 297 172 0 chr9 32662602 32662666 -91413506 + L2a LINE L2 3292 3366 -9 1 834 309 258 486 36 chr9 32662895 32663114 -91413058 + L1MB3 LINE L1 5279 5596 -587 1 834 261 0 0 0 chr9 32663115 32663144 -91413028 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 1 834 1119 286 56 36 chr9 32663190 32663633 -91412539 + L1MB3 LINE L1 5697 6148 -35 1 834 234 62 0 0 chr9 32664376 32664408 -91411764 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 834 287 365 59 33 chr9 32664573 32664726 -91411446 - MER46C DNA MER2_type -3 335 179 1 834 1314 263 122 31 chr9 32666815 32667279 -91408893 - Lx8 LINE L1 -2 7471 6965 1 834 378 107 0 0 chr9 32667279 32667335 -91408837 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 834 1308 263 122 31 chr9 32667335 32667352 -91408820 - Lx8 LINE L1 -509 6964 6947 1 834 581 344 181 35 chr9 32667386 32668260 -91407912 + BLACKJACK DNA AcHobo 1 1001 -1943 1 834 372 22 0 0 chr9 32668439 32668484 -91407688 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 834 369 0 0 0 chr9 32668484 32668524 -91407648 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 834 454 285 0 38 chr9 32668530 32668687 -91407485 - MER105 DNA DNA -51 153 3 1 834 300 321 154 32 chr9 32668691 32669385 -91406787 + BLACKJACK DNA AcHobo 1229 2007 -937 1 834 21 57 0 0 chr9 32669492 32669527 -91406645 + AT_rich Low_complexity Low_complexity 1 35 0 2 834 294 105 52 13 chr9 32669700 32669777 -91406395 + (CAGA)n Simple_repeat Simple_repeat 4 83 0 2 834 301 111 0 18 chr9 32669777 32669832 -91406340 + HAL1-3A_ME LINE L1 1976 2029 -829 2 834 745 313 15 26 chr9 32669835 32670104 -91406068 - Lx7 LINE L1 -395 7301 7036 2 834 504 313 12 73 chr9 32670204 32670449 -91405723 + BLACKJACK DNA AcHobo 2116 2345 -599 1 834 347 302 57 0 chr9 32671221 32671327 -91404845 - B1F SINE Alu -18 131 20 2 834 1702 329 113 32 chr9 32672877 32674796 -91401376 + L1_Mur3 LINE L1 3797 5870 -10 2 834 1498 77 0 5 chr9 32675101 32675297 -91400875 + B2_Mm2 SINE B2 1 195 0 2 834 1657 230 82 37 chr9 32675537 32676047 -91400125 + Lx3C LINE L1 6443 6975 -1 2 834 270 81 0 0 chr9 32676054 32676091 -91400081 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 834 1069 114 17 0 chr9 32676091 32676267 -91399905 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2 834 603 241 22 22 chr9 32677103 32677239 -91398933 + RSINE1 SINE B4 6 141 -24 2 834 24 0 0 0 chr9 32677270 32677294 -91398878 + AT_rich Low_complexity Low_complexity 1 24 0 2 834 279 314 84 30 chr9 32677314 32677553 -91398619 - MTEb LTR MaLR -14 365 85 2 834 25 0 0 0 chr9 32678714 32678739 -91397433 + AT_rich Low_complexity Low_complexity 1 25 0 2 834 225 343 111 0 chr9 32679300 32679399 -91396773 + PB1D10 SINE Alu 1 110 -7 2 834 357 24 0 0 chr9 32681872 32681914 -91394258 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 834 418 333 139 11 chr9 32683121 32683388 -91392784 + MER44A DNA MER2_type 6 306 -33 2 834 240 319 100 19 chr9 32683448 32683608 -91392564 + MIR3 SINE MIR 11 183 -25 2 834 1127 68 0 40 chr9 32683624 32683776 -91392396 + B1_Mus1 SINE Alu 1 146 -2 2 834 206 121 0 0 chr9 32683778 32683811 -91392361 + (A)n Simple_repeat Simple_repeat 1 33 0 2 834 21 89 0 0 chr9 32683971 32684027 -91392145 + AT_rich Low_complexity Low_complexity 1 56 0 2 834 235 297 0 0 chr9 32684103 32684167 -91392005 - PB1 SINE Alu -63 64 1 2 834 533 234 36 48 chr9 32684699 32684865 -91391307 - MER97c DNA MER1_type? -908 182 19 2 834 192 97 0 0 chr9 32686241 32686272 -91389900 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 834 303 244 175 25 chr9 32687169 32687329 -91388843 - MER58A DNA MER1_type -14 210 27 2 834 198 330 32 32 chr9 32687947 32688041 -91388131 + MIRb SINE MIR 21 114 -154 2 834 399 245 18 28 chr9 32688384 32688493 -91387679 + PB1D10 SINE Alu 3 110 -7 2 834 360 0 0 0 chr9 32688500 32688540 -91387632 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 834 251 320 85 39 chr9 32691280 32691410 -91384762 + B1_Mur1 SINE Alu 1 136 -13 2 834 266 0 29 0 chr9 32691424 32691458 -91384714 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 834 449 359 6 0 chr9 32691598 32691757 -91384415 - RSINE1 SINE B4 0 165 6 2 834 3490 137 33 17 chr9 32695230 32695808 -91380364 - Lx LINE L1 -4 6650 6064 2 834 423 0 0 0 chr9 32695948 32695995 -91380177 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 2 834 650 13 13 0 chr9 32696231 32696310 -91379862 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 2 834 3379 5 0 0 chr9 32696310 32696677 -91379495 + IAPLTR1_Mm LTR ERVK 1 367 0 2 834 56840 20 14 7 chr9 32696677 32703102 -91373070 + IAPEz-int LTR ERVK 8 6481 0 2 834 3379 5 0 0 chr9 32703102 32703469 -91372703 + IAPLTR1_Mm LTR ERVK 1 367 0 2 834 543 187 0 0 chr9 32703469 32703576 -91372596 + (TCCA)n Simple_repeat Simple_repeat 3 109 0 2 834 418 301 131 28 chr9 32703577 32703867 -91372305 - L1MA9 LINE L1 -74 6238 5919 2 834 558 41 0 0 chr9 32703975 32704048 -91372124 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 834 441 265 0 10 chr9 32704057 32704160 -91372012 - PB1 SINE Alu -2 125 24 2 834 733 304 47 42 chr9 32704267 32704672 -91371500 - L1MA9 LINE L1 -567 5745 5339 2 834 321 256 0 35 chr9 32705481 32705566 -91370606 + ID4_ SINE ID 2 83 0 2 834 530 234 56 7 chr9 32705720 32705862 -91370310 - B1_Mur1 SINE Alu 0 149 1 2 834 348 24 0 0 chr9 32710032 32710073 -91366099 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2 834 998 86 0 0 chr9 32710073 32710212 -91365960 - B1_Mus1 SINE Alu -2 146 8 2 834 438 108 0 0 chr9 32710320 32710385 -91365787 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 834 247 152 43 21 chr9 32710880 32710974 -91365198 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 2 834 321 331 52 37 chr9 32711261 32711452 -91364720 - MIR SINE MIR -51 211 18 2 834 855 264 10 5 chr9 32711901 32712103 -91364069 + B3 SINE B2 5 207 -9 2 834 1405 243 86 18 chr9 32712183 32712569 -91363603 + MTD LTR MaLR 7 418 -1 2 834 738 0 0 0 chr9 32713179 32713261 -91362911 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 834 491 163 20 0 chr9 32713495 32713593 -91362579 + (TCTCTG)n Simple_repeat Simple_repeat 3 102 0 2 834 257 164 18 16 chr9 32713779 32713843 -91362329 + MIRc SINE MIR 158 216 -52 2 834 555 284 8 93 chr9 32714948 32715185 -91360987 + B4A SINE B4 2 218 -74 2 834 270 0 0 0 chr9 32716872 32716902 -91359270 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 834 522 276 49 0 chr9 32716911 32717034 -91359138 - B3A SINE B2 -59 139 11 2 834 312 27 0 0 chr9 32720433 32720470 -91355702 + (T)n Simple_repeat Simple_repeat 1 37 0 2 834 371 107 0 13 chr9 32721491 32721567 -91354605 + (CAAAA)n Simple_repeat Simple_repeat 2 76 0 2 834 464 0 0 18 chr9 32721731 32721788 -91354384 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 834 226 291 16 106 chr9 32721921 32722044 -91354128 - B3A SINE B2 -6 192 81 2 834 767 261 12 75 chr9 32722131 32722450 -91353722 - L1MB3 LINE L1 -15 6168 5870 2 834 29 0 0 0 chr9 32722766 32722795 -91353377 + AT_rich Low_complexity Low_complexity 1 29 0 2 834 264 287 10 87 chr9 32723383 32723486 -91352686 - AmnSINE1 SINE SINE -414 161 67 2 834 393 22 0 0 chr9 32723678 32723724 -91352448 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 834 194 320 170 0 chr9 32724065 32724165 -91352007 - L4 LINE RTE -147 1882 1766 2 834 30 0 0 0 chr9 32724307 32724337 -91351835 + AT_rich Low_complexity Low_complexity 1 30 0 2 834 342 0 0 0 chr9 32724381 32724419 -91351753 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 834 487 267 160 0 chr9 32724421 32724552 -91351620 - RSINE1 SINE B4 -11 154 3 2 834 323 377 37 21 chr9 32724770 32724957 -91351215 - L4 LINE RTE -735 1294 1105 2 834 477 0 0 0 chr9 32725361 32725414 -91350758 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 834 451 294 42 7 chr9 32725767 32725911 -91350261 + B1F1 SINE Alu 1 149 0 2 834 707 263 66 28 chr9 32726411 32726697 -91349475 - MER33 DNA MER1_type -8 316 20 2 834 181 367 22 11 chr9 32726821 32726912 -91349260 - L2a LINE L2 -14 3412 3321 2 834 468 0 0 0 chr9 32726924 32726976 -91349196 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 834 901 174 180 21 chr9 32726984 32727178 -91348994 + URR1B DNA MER1_type 1 225 0 2 834 603 152 0 0 chr9 32727734 32727879 -91348293 + (TCTA)n Simple_repeat Simple_repeat 2 146 0 2 834 223 351 82 0 chr9 32728225 32728359 -91347813 - L2a LINE L2 -71 3355 3211 2 834 409 14 27 41 chr9 32728359 32728432 -91347740 + (TAAAAA)n Simple_repeat Simple_repeat 5 76 0 2 834 468 51 0 0 chr9 32728575 32728634 -91347538 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 834 432 0 0 0 chr9 32729984 32730032 -91346140 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 834 990 125 0 0 chr9 32731189 32731504 -91344668 + (CA)n Simple_repeat Simple_repeat 1 315 0 2 834 243 146 0 0 chr9 32733245 32733286 -91342886 + (GGGGA)n Simple_repeat Simple_repeat 5 45 0 2 834 215 225 169 0 chr9 32734633 32734704 -91341468 - BC1_Mm scRNA scRNA -55 97 15 2 834 870 286 14 5 chr9 32734771 32734985 -91341187 + B3 SINE B2 1 216 0 2 834 216 0 0 0 chr9 32735072 32735096 -91341076 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 834 224 253 119 12 chr9 32735423 32735507 -91340665 - L3 LINE CR1 -9 4480 4388 2 834 228 67 0 0 chr9 32736271 32736301 -91339871 + (T)n Simple_repeat Simple_repeat 1 30 0 2 834 673 12 23 0 chr9 32736549 32736635 -91339537 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 834 540 0 0 0 chr9 32736842 32736902 -91339270 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 834 489 17 0 0 chr9 32737785 32737843 -91338329 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 834 581 284 43 29 chr9 32737923 32738130 -91338042 - B3 SINE B2 -4 212 3 2 834 261 266 8 0 chr9 32738142 32738266 -91337906 + CT-rich Low_complexity Low_complexity 1 125 0 2 834 263 232 18 0 chr9 32738194 32738250 -91337922 + C-rich Low_complexity Low_complexity 6 62 0 2 834 192 308 56 28 chr9 32738897 32739004 -91337168 + MIR SINE MIR 34 143 -119 2 834 857 239 5 38 chr9 32742454 32742667 -91333505 - B3 SINE B2 0 216 11 2 834 491 292 36 36 chr9 32742819 32742858 -91333314 - B2_Mm2 SINE B2 -2 193 156 2 834 387 0 0 0 chr9 32742858 32742901 -91333271 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 834 496 269 19 12 chr9 32742901 32743053 -91333119 - B3A SINE B2 -40 155 2 2 834 988 45 15 0 chr9 32743465 32743599 -91332573 + (TCTA)n Simple_repeat Simple_repeat 2 137 0 2 834 717 34 0 0 chr9 32744625 32744713 -91331459 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 2 834 912 178 0 0 chr9 32744714 32744894 -91331278 + CT-rich Low_complexity Low_complexity 1 180 0 2 834 351 0 0 0 chr9 32746075 32746114 -91330058 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 834 272 211 18 0 chr9 32749572 32749629 -91326543 + B4 SINE B4 2 59 -233 2 834 207 0 0 0 chr9 32749643 32749666 -91326506 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 834 2450 223 69 7 chr9 32749930 32750050 -91326122 - RMER1B Other Other 0 1066 941 3 834 213 39 0 0 chr9 32750050 32750076 -91326096 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 834 2669 230 22 26 chr9 32750076 32751227 -91324945 - RMER1A Other Other -165 865 1 3 834 23 0 0 0 chr9 32751638 32751661 -91324511 + AT_rich Low_complexity Low_complexity 1 23 0 3 834 204 97 0 0 chr9 32752088 32752119 -91324053 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 834 559 340 20 20 chr9 32753163 32753409 -91322763 - MLT1F2 LTR MaLR -2 558 313 3 834 729 274 49 135 chr9 32753952 32754404 -91321768 + MTD LTR MaLR 5 417 -2 3 834 220 298 107 58 chr9 32754588 32754709 -91321463 + MIRc SINE MIR 95 221 -47 3 834 433 323 0 0 chr9 32755172 32755299 -91320873 - Lx8 LINE L1 -743 6730 6604 3 834 21 36 0 0 chr9 32755454 32755482 -91320690 + AT_rich Low_complexity Low_complexity 1 28 0 3 834 446 340 75 58 chr9 32756576 32756923 -91319249 + ORR1E LTR MaLR 1 353 -6 3 834 303 203 0 0 chr9 32757703 32757777 -91318395 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 834 395 206 35 6 chr9 32757825 32757996 -91318176 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 834 247 187 53 0 chr9 32758009 32758084 -91318088 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 834 692 258 78 92 chr9 32758088 32758308 -91317864 - B4A SINE B4 -2 290 63 3 834 456 19 0 0 chr9 32758308 32758361 -91317811 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 834 692 258 78 92 chr9 32758361 32758434 -91317738 - B4A SINE B4 -230 62 1 3 834 395 119 15 0 chr9 32758807 32758874 -91317298 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 834 1534 73 5 10 chr9 32759072 32759266 -91316906 + B2_Mm1t SINE B2 1 193 0 3 834 285 29 0 0 chr9 32759759 32759793 -91316379 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 834 3209 12 0 0 chr9 32760676 32761013 -91315159 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 834 26242 24 35 12 chr9 32761013 32764102 -91312070 + IAPEz-int LTR ERVK 8 3165 -3316 3 834 10088 23 2 4 chr9 32764091 32765231 -91310941 + IAPEz-int LTR ERVK 5345 6481 0 3 834 3209 12 0 0 chr9 32765231 32765568 -91310604 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 834 635 249 44 39 chr9 32765641 32765821 -91310351 + B3 SINE B2 27 207 -9 3 834 437 214 12 13 chr9 32765845 32765948 -91310224 - B3A SINE B2 -118 98 2 3 834 252 0 0 0 chr9 32766700 32766728 -91309444 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 834 806 98 0 8 chr9 32767308 32767431 -91308741 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 3 834 244 256 85 49 chr9 32767825 32767907 -91308265 - MER34 LTR ERV1 -69 473 389 3 835 207 0 0 0 chr9 32768729 32768752 -91307420 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 835 749 304 66 30 chr9 32768755 32769026 -91307146 - MLT1A0 LTR MaLR -52 313 33 3 835 224 167 100 0 chr9 32769210 32769270 -91306902 - B1F SINE Alu 0 149 84 3 835 351 78 0 0 chr9 32769716 32769767 -91306405 + (GGGAGA)n Simple_repeat Simple_repeat 3 53 0 3 835 415 340 40 26 chr9 32769995 32770146 -91306026 + RSINE1 SINE B4 7 159 -6 3 835 1333 35 6 23 chr9 32770880 32770895 -91305277 - B2_Mm1a SINE B2 -20 173 161 3 835 387 0 0 0 chr9 32770895 32770938 -91305234 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 3 835 1333 35 6 23 chr9 32770938 32771096 -91305076 - B2_Mm1a SINE B2 -33 160 3 3 835 878 269 78 106 chr9 32771170 32771528 -91304644 + ORR1E LTR MaLR 2 349 -10 3 835 422 261 174 72 chr9 32771996 32772508 -91303664 + L1M4 LINE L1 3011 3585 -2561 3 835 1263 61 0 0 chr9 32772508 32772655 -91303517 - B1_Mus2 SINE Alu 0 147 1 3 835 422 261 174 72 chr9 32772655 32772769 -91303403 + L1M4 LINE L1 3586 3701 -2445 3 835 978 303 182 24 chr9 32772822 32773379 -91302793 + L1M4 LINE L1 3813 4435 -1711 3 835 471 63 0 0 chr9 32773379 32773442 -91302730 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 3 835 978 303 182 24 chr9 32773442 32774048 -91302124 + L1M4 LINE L1 4436 5153 -993 3 835 1298 60 5 0 chr9 32774048 32774265 -91301907 + (CAAAC)n Simple_repeat Simple_repeat 1 217 0 3 835 186 43 0 0 chr9 32774265 32774288 -91301884 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 3 835 978 303 182 24 chr9 32774288 32774378 -91301794 + L1M4 LINE L1 5154 5260 -886 3 835 455 0 18 0 chr9 32774378 32774433 -91301739 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 3 835 978 303 182 24 chr9 32774433 32774459 -91301713 + L1M4 LINE L1 5261 5296 -850 3 835 698 224 54 7 chr9 32775060 32775208 -91300964 + B3 SINE B2 2 156 -60 3 835 257 318 0 12 chr9 32775287 32775373 -91300799 + (CATATA)n Simple_repeat Simple_repeat 4 88 0 3 835 297 314 178 0 chr9 32775440 32775558 -91300614 - B1F SINE Alu -10 139 1 3 835 334 330 125 34 chr9 32776283 32776603 -91299569 + L1M5 LINE L1 4745 5093 -1053 3 835 3169 128 0 28 chr9 32777547 32778013 -91298159 + Lx2 LINE L1 6545 6997 0 3 835 288 77 0 0 chr9 32778022 32778061 -91298111 + (A)n Simple_repeat Simple_repeat 1 39 0 3 835 249 310 26 8 chr9 32780929 32781046 -91295126 - L1MEf LINE L1 -4555 2532 2414 3 835 267 235 10 20 chr9 32781142 32781242 -91294930 + GA-rich Low_complexity Low_complexity 3 101 0 3 835 407 334 30 24 chr9 32781292 32781597 -91294575 - L1MEf LINE L1 -4781 2321 1900 3 835 486 0 0 0 chr9 32781876 32781930 -91294242 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 835 189 0 0 0 chr9 32782333 32782354 -91293818 + (CACCC)n Simple_repeat Simple_repeat 1 21 0 3 835 702 114 23 15 chr9 32782645 32782778 -91293394 + CT-rich Low_complexity Low_complexity 3 136 0 3 835 561 66 11 21 chr9 32782829 32782922 -91293250 + (TCC)n Simple_repeat Simple_repeat 1 92 0 3 835 233 305 38 8 chr9 32782957 32783089 -91293083 - L1MEe LINE L1 -4164 690 555 3 835 465 19 0 0 chr9 32783180 32783234 -91292938 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 835 1502 239 94 0 chr9 32783297 32783678 -91292494 + MTD LTR MaLR 3 419 0 3 835 246 132 0 0 chr9 32783936 32783989 -91292183 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 835 1987 167 56 77 chr9 32784675 32785104 -91291068 + MTC LTR MaLR 1 420 -1 3 835 297 0 0 0 chr9 32785265 32785298 -91290874 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 835 333 0 0 0 chr9 32785298 32785334 -91290838 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 835 544 305 33 13 chr9 32785976 32786129 -91290043 + RSINE1 SINE B4 4 159 -6 3 835 506 314 112 24 chr9 32787034 32787292 -91288880 + B4A SINE B4 1 284 -8 3 835 3250 201 104 49 chr9 32787307 32788159 -91288013 - RMER13B LTR ERVK -9 899 1 3 835 423 0 0 0 chr9 32788230 32788277 -91287895 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 835 299 343 46 69 chr9 32788484 32788700 -91287472 + MIR SINE MIR 16 226 -36 3 835 187 204 167 0 chr9 32790020 32790074 -91286098 - L4 LINE RTE -199 1830 1768 3 835 479 16 0 31 chr9 32790180 32790245 -91285927 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 3 835 610 272 56 52 chr9 32790335 32790548 -91285624 + B3 SINE B2 2 215 -1 3 835 3559 168 82 9 chr9 32790883 32791514 -91284658 + RLTR33 LTR ERVK 2 678 0 3 835 612 230 44 7 chr9 32791518 32791654 -91284518 + B3 SINE B2 1 141 -75 3 835 781 307 48 28 chr9 32791650 32791953 -91284219 - MTEb LTR MaLR -66 313 1 3 835 5027 285 60 30 chr9 32791962 32793486 -91282686 - MTEb-int LTR MaLR -9 1571 1 3 835 1003 310 70 31 chr9 32793490 32793849 -91282323 - MTEb LTR MaLR -4 375 3 3 835 210 71 0 0 chr9 32795001 32795029 -91281143 + (T)n Simple_repeat Simple_repeat 1 28 0 3 835 625 118 0 18 chr9 32795319 32795431 -91280741 + (TC)n Simple_repeat Simple_repeat 1 110 0 3 835 279 157 0 0 chr9 32795444 32795495 -91280677 + CT-rich Low_complexity Low_complexity 1 51 0 3 835 302 325 58 19 chr9 32795733 32795887 -91280285 + MER20 DNA MER1_type 35 194 -25 3 835 512 176 91 7 chr9 32795989 32796143 -91280029 - Lx9 LINE L1 -1 7643 7477 3 835 267 173 0 0 chr9 32796143 32796195 -91279977 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 835 1235 331 89 22 chr9 32796468 32797101 -91279071 + MER45B DNA Tip100 67 744 -296 3 835 290 326 73 68 chr9 32797101 32797292 -91278880 + MLT1A1 LTR MaLR 3 194 -214 3 835 297 299 78 33 chr9 32797542 32797722 -91278450 + MER45B DNA Tip100 840 1027 -13 3 835 524 211 79 66 chr9 32798819 32798971 -91277201 + B3A SINE B2 1 154 -44 3 835 3717 134 44 22 chr9 32799437 32800023 -91276149 + Lx4A LINE L1 6458 7056 -2 3 835 4040 141 60 43 chr9 32800072 32800867 -91275305 - RMER17D2 LTR ERVK 0 809 1 3 835 198 244 185 22 chr9 32800867 32800959 -91275213 + MIR SINE MIR 156 262 0 3 835 410 242 99 0 chr9 32801268 32801359 -91274813 - PB1D10 SINE Alu -5 112 13 3 835 362 267 35 0 chr9 32801296 32801382 -91274790 - ID_B1 SINE B4 -68 156 68 3 835 230 264 67 104 chr9 32801875 32802010 -91274162 - RMER15 LTR ERVL -445 130 1 3 835 258 246 43 14 chr9 32802015 32802085 -91274087 - MTD LTR MaLR 0 419 348 3 835 582 254 134 70 chr9 32802510 32802794 -91273378 + MTD LTR MaLR 112 413 -6 3 835 678 272 50 54 chr9 32803000 32803241 -91272931 + RMER15 LTR ERVL 336 575 0 3 835 992 330 60 8 chr9 32803588 32804107 -91272065 + RMER15-int LTR ERVL 382 927 -4072 3 835 742 336 4 0 chr9 32804150 32804385 -91271787 + RMER15-int LTR ERVL 1052 1287 -3712 3 835 2431 290 83 66 chr9 32804357 32805482 -91270690 + RMER15-int LTR ERVL 3643 4786 -213 3 835 315 195 134 0 chr9 32805482 32805564 -91270608 + Lx8 LINE L1 6936 7028 -445 3 835 233 264 75 97 chr9 32805564 32805698 -91270474 + RMER15 LTR ERVL 1 131 -444 3 835 478 272 86 35 chr9 32805825 32806023 -91270149 + RMER15 LTR ERVL 361 568 -7 3 835 261 83 0 0 chr9 32806740 32806776 -91269396 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 835 246 203 15 30 chr9 32807296 32807362 -91268810 + GA-rich Low_complexity Low_complexity 1 65 0 3 835 460 206 64 18 chr9 32807535 32807644 -91268528 - B4A SINE B4 -174 118 5 3 835 186 277 60 0 chr9 32808061 32808144 -91268028 - L2a LINE L2 -2 3424 3337 3 835 290 336 13 57 chr9 32809365 32809523 -91266649 - MIRb SINE MIR -15 253 103 3 835 1615 183 57 42 chr9 32809622 32809801 -91266371 - RMER17C LTR ERVK 0 410 232 3 835 528 16 0 0 chr9 32809801 32809862 -91266310 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 835 1615 183 57 42 chr9 32809862 32810086 -91266086 - RMER17C LTR ERVK -179 231 1 3 835 10145 171 43 63 chr9 32810094 32810437 -91265735 - RMER17C-int LTR ERVK 0 3238 2900 3 835 432 0 0 0 chr9 32810437 32810485 -91265687 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 835 10145 171 43 63 chr9 32810485 32810749 -91265423 - RMER17C-int LTR ERVK -339 2899 2619 3 835 241 47 23 23 chr9 32810749 32810793 -91265379 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 835 10145 171 43 63 chr9 32810793 32812433 -91263739 - RMER17C-int LTR ERVK -620 2618 1038 3 835 293 232 60 12 chr9 32812504 32812587 -91263585 + CT-rich Low_complexity Low_complexity 3 89 0 3 835 1095 252 191 14 chr9 32812745 32813091 -91263081 - MTD LTR MaLR 0 419 13 3 835 203 0 0 36 chr9 32813106 32813134 -91263038 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 835 424 281 48 108 chr9 32813444 32813505 -91262667 + CYRA11_Mm Unknown Y-chromosome 115 298 -319 3 835 1147 184 9 9 chr9 32813505 32813724 -91262448 - URR1A DNA MER1_type 0 226 8 3 835 424 281 48 108 chr9 32813724 32813759 -91262413 + CYRA11_Mm Unknown Y-chromosome 299 410 -207 3 835 971 263 140 0 chr9 32813780 32814056 -91262116 + MTE2b LTR MaLR 61 375 -4 3 835 560 202 0 0 chr9 32814177 32814286 -91261886 + MERVL_2A-int LTR ERVL 5653 5761 0 4 835 1737 203 230 5 chr9 32814286 32814721 -91261451 + MT2A LTR ERVL 1 533 0 4 835 8728 26 0 0 chr9 32815897 32817192 -91258980 - L1Md_T LINE L1 0 6582 5288 4 835 1578 16 0 0 chr9 32817189 32817371 -91258801 + L1Md_T LINE L1 5134 5315 -568 4 835 877 127 6 6 chr9 32817610 32817768 -91258404 + (GGAGAA)n Simple_repeat Simple_repeat 3 160 0 4 835 486 0 0 0 chr9 32819966 32820020 -91256152 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 835 234 0 0 0 chr9 32820020 32820045 -91256127 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 835 735 290 28 72 chr9 32820217 32820507 -91255665 + B4A SINE B4 2 278 -14 4 835 1723 235 19 8 chr9 32820746 32821110 -91255062 - ORR1D1 LTR MaLR 0 374 7 4 835 663 260 33 22 chr9 32821527 32821708 -91254464 + Lx8 LINE L1 7158 7340 -133 4 835 1189 93 33 0 chr9 32822141 32822324 -91253848 - L1_Mus3 LINE L1 -3 6635 6447 4 835 1565 49 0 0 chr9 32822318 32822503 -91253669 - L1_Mus2 LINE L1 -734 5832 5648 4 835 15889 112 12 5 chr9 32822499 32825467 -91250705 - L1_Mus3 LINE L1 -198 6440 3446 4 835 10659 60 2 1 chr9 32825466 32827498 -91248674 - L1Md_F2 LINE L1 0 6582 4547 4 835 6911 77 34 1 chr9 32827496 32828440 -91247732 + L1_Mm LINE L1 2313 3287 -2596 4 835 910 70 0 65 chr9 32828440 32828578 -91247594 + ORR1A1 LTR MaLR 218 346 0 4 835 2725 32 0 0 chr9 32828584 32828925 -91247247 + MTA_Mm-int LTR MaLR 758 1098 0 4 835 3726 20 2 0 chr9 32828925 32829320 -91246852 + MTA_Mm LTR MaLR 1 396 0 4 835 615 171 39 0 chr9 32829321 32829450 -91246722 - MusHAL1 LINE L1 -1952 760 627 4 835 368 303 187 22 chr9 32831380 32831562 -91244610 + B4A SINE B4 2 213 -79 4 835 231 225 61 26 chr9 32832088 32832202 -91243970 + Lx9 LINE L1 7527 7644 0 4 835 228 67 0 0 chr9 32832278 32832308 -91243864 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 835 453 343 7 40 chr9 32832363 32832512 -91243660 - RSINE1 SINE B4 -17 148 5 4 835 191 300 14 14 chr9 32832583 32832654 -91243518 - MIRc SINE MIR -97 171 101 4 835 721 244 24 150 chr9 32833471 32833717 -91242455 + B3A SINE B2 2 216 0 4 835 533 215 0 36 chr9 32833825 32833936 -91242236 + B1_Mur2 SINE Alu 36 142 -7 4 835 318 169 0 17 chr9 32833936 32833996 -91242176 + (TAA)n Simple_repeat Simple_repeat 1 59 0 4 835 23 33 0 0 chr9 32834074 32834104 -91242068 + AT_rich Low_complexity Low_complexity 1 30 0 4 835 207 0 0 0 chr9 32834121 32834144 -91242028 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 835 243 0 0 0 chr9 32834509 32834536 -91241636 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 835 1120 289 83 57 chr9 32834560 32835249 -91240923 - L1MD LINE L1 -1985 4161 3455 4 835 555 297 227 50 chr9 32835361 32835722 -91240450 + MLT1F LTR MaLR 1 425 -123 4 835 306 0 0 0 chr9 32836087 32836121 -91240051 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 835 535 14 28 0 chr9 32836638 32836710 -91239462 + (TA)n Simple_repeat Simple_repeat 1 74 0 4 835 218 219 10 40 chr9 32836836 32836896 -91239276 - PB1D7 SINE Alu -5 115 52 4 835 269 363 147 8 chr9 32837125 32837505 -91238667 - L1MD1 LINE L1 -133 6109 5677 4 835 234 0 0 0 chr9 32838061 32838087 -91238085 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 835 301 182 250 0 chr9 32838244 32838332 -91237840 + RMER6B LTR ERVK 25 134 -327 4 835 1245 188 211 33 chr9 32838335 32838666 -91237506 + RMER6B LTR ERVK 70 459 -2 4 835 837 66 0 0 chr9 32838740 32838861 -91237311 + (CA)n Simple_repeat Simple_repeat 2 122 0 4 835 454 340 89 11 chr9 32839519 32839801 -91236371 + MLT2C1 LTR ERVL 94 397 0 4 835 249 227 134 0 chr9 32840000 32840097 -91236075 - MIR3 SINE MIR -3 205 96 4 835 225 0 0 0 chr9 32840858 32840883 -91235289 + (A)n Simple_repeat Simple_repeat 1 25 0 4 835 300 70 0 0 chr9 32841239 32841282 -91234890 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 835 812 317 33 60 chr9 32841351 32841650 -91234522 - B4A SINE B4 0 292 2 4 835 240 200 0 0 chr9 32842362 32842412 -91233760 + T-rich Low_complexity Low_complexity 34 83 0 4 835 1129 69 7 0 chr9 32842415 32842560 -91233612 - B1_Mm SINE Alu 0 147 2 4 835 347 0 0 23 chr9 32843607 32843651 -91232521 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 835 342 0 0 0 chr9 32843949 32843987 -91232185 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 835 240 296 86 54 chr9 32844041 32844134 -91232038 - MLT1H LTR MaLR -239 310 215 4 835 258 32 0 0 chr9 32844407 32844438 -91231734 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 835 351 0 0 0 chr9 32844439 32844478 -91231694 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 835 37 69 0 0 chr9 32846304 32846376 -91229796 + AT_rich Low_complexity Low_complexity 1 72 0 4 835 1155 36 0 14 chr9 32846503 32846639 -91229533 + B1_Mm SINE Alu 1 135 -12 4 835 207 0 0 0 chr9 32846639 32846662 -91229510 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 835 378 0 0 0 chr9 32846918 32846960 -91229212 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 835 333 0 0 0 chr9 32846960 32846996 -91229176 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 835 36945 11 0 3 chr9 32848194 32855005 -91221167 + L1Md_A LINE L1 1 5586 -297 4 835 9093 1 0 0 chr9 32855005 32856001 -91220171 + L1Md_A LINE L1 5587 6582 0 4 835 2822 70 42 0 chr9 32856776 32857160 -91219012 + MTB LTR MaLR 1 400 0 4 835 343 283 100 0 chr9 32857214 32857334 -91218838 + MIR SINE MIR 76 207 -55 4 835 1477 243 93 0 chr9 32857387 32857748 -91218424 - MTD LTR MaLR -14 405 25 4 835 244 12 0 0 chr9 32857757 32857793 -91218379 - Lx LINE L1 -514 5783 5721 4 835 1423 78 19 5 chr9 32857810 32858015 -91218157 + L1_Mus1 LINE L1 6359 6566 -1 4 835 242 56 0 27 chr9 32858843 32858880 -91217292 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 4 835 330 266 67 58 chr9 32859243 32859312 -91216860 - Lx8 LINE L1 -412 7061 6998 4 835 1720 175 30 92 chr9 32859312 32859715 -91216457 + ORR1C1 LTR MaLR 1 378 0 4 835 330 266 67 58 chr9 32859715 32859765 -91216407 - Lx8 LINE L1 -476 6997 6941 4 835 21 36 0 0 chr9 32860576 32860604 -91215568 + AT_rich Low_complexity Low_complexity 1 28 0 4 835 484 288 75 17 chr9 32860951 32861071 -91215101 + B1_Mm SINE Alu 1 127 -20 4 835 500 258 117 38 chr9 32861112 32861143 -91215029 + L1_Mur3 LINE L1 1408 1440 -4446 4 835 207 0 0 0 chr9 32861143 32861166 -91215006 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 835 709 258 117 38 chr9 32861166 32861502 -91214670 + L1_Mur3 LINE L1 1441 1807 -4073 4 835 899 325 61 47 chr9 32861710 32862052 -91214120 - MTD LTR MaLR -14 405 59 4 835 219 322 8 33 chr9 32864325 32864447 -91211725 + GA-rich Low_complexity Low_complexity 1 119 0 4 835 31 26 0 0 chr9 32864644 32864682 -91211490 + AT_rich Low_complexity Low_complexity 1 38 0 4 835 228 264 44 0 chr9 32864732 32864823 -91211349 + L1_Mur3 LINE L1 3330 3424 -2462 4 835 247 342 50 14 chr9 32864836 32865118 -91211054 + L1_Mur3 LINE L1 4025 4316 -1564 4 835 26 0 0 0 chr9 32865491 32865517 -91210655 + AT_rich Low_complexity Low_complexity 1 26 0 4 835 330 358 83 18 chr9 32865800 32865968 -91210204 + B4A SINE B4 91 269 -23 4 835 333 0 0 0 chr9 32865968 32866005 -91210167 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 835 282 29 0 0 chr9 32867272 32867307 -91208865 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 835 725 121 0 8 chr9 32867367 32867492 -91208680 + (TC)n Simple_repeat Simple_repeat 2 125 0 4 835 239 133 0 22 chr9 32867560 32867606 -91208566 + CT-rich Low_complexity Low_complexity 2 46 0 4 835 223 292 0 0 chr9 32869071 32869143 -91207029 + (CATA)n Simple_repeat Simple_repeat 3 74 0 4 835 227 250 0 12 chr9 32869153 32869238 -91206934 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 835 189 107 0 0 chr9 32869545 32869573 -91206599 + (T)n Simple_repeat Simple_repeat 1 28 0 4 835 186 288 50 17 chr9 32870106 32870166 -91206006 + MIRm SINE MIR 196 257 -19 4 835 261 0 0 0 chr9 32870606 32870635 -91205537 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 835 275 312 73 0 chr9 32870764 32870860 -91205312 - MLT1C LTR MaLR 0 467 365 4 835 225 0 0 0 chr9 32870905 32870930 -91205242 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 835 326 255 96 4 chr9 32870931 32871055 -91205117 - B3 SINE B2 -50 145 8 4 835 392 233 160 15 chr9 32871071 32871202 -91204970 - MLT1C LTR MaLR -274 193 44 4 835 492 18 0 0 chr9 32871581 32871638 -91204534 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 835 464 0 18 0 chr9 32871713 32871769 -91204403 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 835 23 54 0 0 chr9 32871974 32872011 -91204161 + AT_rich Low_complexity Low_complexity 1 37 0 4 835 667 263 57 21 chr9 32872011 32872205 -91203967 - B3 SINE B2 -14 202 2 4 835 188 281 52 17 chr9 32872766 32872824 -91203348 - L2 LINE L2 -355 3064 3005 4 835 236 348 80 43 chr9 32873224 32873240 -91202932 - B3 SINE B2 -40 176 10 4 835 665 245 69 14 chr9 32873240 32873385 -91202787 - RSINE1 SINE B4 -2 163 11 4 835 387 0 0 0 chr9 32873751 32873794 -91202378 + (CAA)n Simple_repeat Simple_repeat 2 44 0 4 835 353 289 59 0 chr9 32874250 32874402 -91201770 + L1MA6 LINE L1 6138 6298 -2 4 835 1086 122 0 4 chr9 32874649 32874911 -91201261 + (GGAA)n Simple_repeat Simple_repeat 1 261 0 4 835 188 320 233 0 chr9 32875928 32876031 -91200141 - MER5B DNA MER1_type -43 135 9 4 835 1164 114 0 0 chr9 32876255 32876431 -91199741 + (TCCC)n Simple_repeat Simple_repeat 4 179 0 4 835 208 324 0 14 chr9 32876439 32876508 -91199664 + (TATG)n Simple_repeat Simple_repeat 3 70 0 4 835 2180 194 22 0 chr9 32876623 32877035 -91199137 + MTC LTR MaLR 1 421 0 4 835 215 267 159 71 chr9 32877046 32877159 -91199013 - B3A SINE B2 -73 125 3 4 835 188 390 10 10 chr9 32877909 32878005 -91198167 - MIRm SINE MIR -102 174 79 4 835 214 162 0 0 chr9 32878128 32878165 -91198007 + T-rich Low_complexity Low_complexity 5 41 0 5 835 190 188 0 0 chr9 32878995 32879027 -91197145 + L4 LINE RTE 1393 1424 -605 5 835 187 231 37 37 chr9 32879078 32879132 -91197040 - L2 LINE L2 -1389 2030 1977 5 835 25 31 0 0 chr9 32879671 32879703 -91196469 + AT_rich Low_complexity Low_complexity 1 32 0 5 835 510 31 0 0 chr9 32880262 32880326 -91195846 + (TTCTC)n Simple_repeat Simple_repeat 2 65 0 5 835 377 20 20 0 chr9 32880332 32880382 -91195790 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 835 465 225 76 48 chr9 32880823 32880968 -91195204 - B1F1 SINE Alu 0 149 1 5 835 2312 298 57 35 chr9 32881166 32881738 -91194434 + Lx8 LINE L1 6299 6881 -592 5 835 4737 64 8 31 chr9 32881738 32882384 -91193788 + L1_Mus2 LINE L1 5936 6566 0 5 835 2312 298 57 35 chr9 32882384 32882773 -91193399 + Lx8 LINE L1 6882 7281 -192 5 835 21 0 0 0 chr9 32882842 32882863 -91193309 + AT_rich Low_complexity Low_complexity 1 21 0 5 835 2193 157 47 30 chr9 32882902 32883450 -91192722 + L1VL4 LINE L1 443 1002 -5333 5 835 9245 176 120 24 chr9 32883425 32885721 -91190451 + Lx2B LINE L1 1778 4292 -1585 5 835 7455 140 70 5 chr9 32885730 32887155 -91189017 + Lx2B LINE L1 5479 6995 -5 5 835 21 0 0 0 chr9 32887262 32887283 -91188889 + AT_rich Low_complexity Low_complexity 1 21 0 5 835 305 334 128 56 chr9 32890564 32890884 -91185288 + MLT1A0 LTR MaLR 4 346 -19 5 835 288 0 0 0 chr9 32890893 32890925 -91185247 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 5 835 202 390 82 17 chr9 32891549 32891781 -91184391 + L2 LINE L2 2651 2897 -522 5 835 239 0 0 31 chr9 32892028 32892060 -91184112 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 835 324 0 0 0 chr9 32892355 32892391 -91183781 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 835 912 203 11 11 chr9 32893258 32893532 -91182640 + GA-rich Low_complexity Low_complexity 1 274 0 5 835 451 247 244 12 chr9 32893940 32894104 -91182068 - B3 SINE B2 -10 206 5 5 835 327 49 0 0 chr9 32894280 32894321 -91181851 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 835 477 0 0 0 chr9 32894322 32894375 -91181797 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 835 262 0 53 0 chr9 32894530 32894568 -91181604 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 5 835 333 303 35 66 chr9 32894615 32894841 -91181331 - Lx7 LINE L1 -333 7363 7145 5 835 339 136 0 0 chr9 32896055 32896114 -91180058 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 835 232 309 0 0 chr9 32896122 32896203 -91179969 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 835 246 136 0 0 chr9 32898384 32898428 -91177744 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 5 835 890 19 0 9 chr9 32898428 32898537 -91177635 + (GGAAA)n Simple_repeat Simple_repeat 2 109 0 5 835 1294 154 23 0 chr9 32898693 32898913 -91177259 + URR1B DNA MER1_type 1 225 0 5 836 881 271 58 0 chr9 32899642 32899849 -91176323 - ID_B1 SINE B4 0 224 6 5 836 450 0 0 0 chr9 32899857 32899907 -91176265 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 5 836 3551 171 9 14 chr9 32899931 32900566 -91175606 - Lx5 LINE L1 -45 7005 6374 5 836 939 8 0 24 chr9 32900789 32900912 -91175260 + (TTC)n Simple_repeat Simple_repeat 1 120 0 5 836 6465 49 0 0 chr9 32902123 32902905 -91173267 + L1Md_F2 LINE L1 5789 6570 -12 5 836 438 20 0 0 chr9 32902959 32903010 -91173162 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 5 836 695 53 21 0 chr9 32903903 32903998 -91172174 + (TCTCC)n Simple_repeat Simple_repeat 3 99 0 5 836 1362 274 30 34 chr9 32904998 32905471 -91170701 - Lx9 LINE L1 -213 7431 6961 5 836 582 307 160 3 chr9 32905864 32906152 -91170020 - MER2 DNA MER2_type 0 345 13 5 836 21 0 0 0 chr9 32906678 32906699 -91169473 + AT_rich Low_complexity Low_complexity 1 21 0 5 836 396 0 0 0 chr9 32906900 32906944 -91169228 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 836 622 320 75 49 chr9 32906977 32907243 -91168929 - B4 SINE B4 -5 287 15 5 836 520 259 73 89 chr9 32908001 32908192 -91167980 - B3A SINE B2 0 198 11 5 836 203 175 0 24 chr9 32909784 32909825 -91166347 + CT-rich Low_complexity Low_complexity 1 40 0 5 836 350 279 9 37 chr9 32911154 32911262 -91164910 - PB1D10 SINE Alu 0 117 13 5 836 380 258 14 49 chr9 32914168 32914338 -91161834 + L1_Rod LINE L1 5363 5560 -326 5 836 578 71 12 0 chr9 32914338 32914422 -91161750 + (GA)n Simple_repeat Simple_repeat 2 86 0 5 836 552 68 0 0 chr9 32914457 32914530 -91161642 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 5 836 1231 144 128 8 chr9 32914535 32914801 -91161371 + L1_Rod LINE L1 5535 5832 -15 5 836 3139 241 107 29 chr9 32915038 32916102 -91160070 + Lx9 LINE L1 6312 7458 -186 5 836 228 35 0 0 chr9 32916105 32916134 -91160038 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 836 345 24 0 0 chr9 32916146 32916188 -91159984 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 836 730 124 29 0 chr9 32916395 32916532 -91159640 + Lx9 LINE L1 7503 7643 -1 5 836 2995 40 21 38 chr9 32916910 32917325 -91158847 + L1Md_T LINE L1 6200 6582 0 5 836 2365 219 68 6 chr9 32917345 32917877 -91158295 + Lx5 LINE L1 6486 7050 0 5 836 402 297 38 76 chr9 32917881 32918092 -91158080 + L1M2 LINE L1 3211 3413 -2730 5 836 3403 70 8 11 chr9 32918533 32919011 -91157161 - L1_Mus1 LINE L1 -192 6375 5899 5 836 1229 84 0 0 chr9 32919011 32919212 -91156960 + L1_Mus1 LINE L1 6394 6567 0 5 836 306 0 0 0 chr9 32919546 32919580 -91156592 + (A)n Simple_repeat Simple_repeat 1 34 0 5 836 189 0 0 0 chr9 32920128 32920149 -91156023 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 836 373 374 86 26 chr9 32920556 32921056 -91155116 + L1M4c LINE L1 1196 1725 -4659 5 836 2909 91 8 0 chr9 32921279 32921674 -91154498 + MTB LTR MaLR 1 398 -2 5 836 426 85 0 0 chr9 32921781 32921840 -91154332 + (GAAAA)n Simple_repeat Simple_repeat 2 60 0 5 836 260 359 38 20 chr9 32921858 32922205 -91153967 + L1M4c LINE L1 2576 2928 -3451 5 836 2344 307 98 17 chr9 32922247 32924045 -91152127 + L1M4c LINE L1 3516 5460 -919 5 836 1011 320 59 16 chr9 32924051 32924438 -91151734 + MTD LTR MaLR 1 404 -15 5 836 414 317 99 37 chr9 32924556 32925165 -91151007 + Lx7 LINE L1 5269 5914 -1782 5 836 3286 164 26 22 chr9 32925363 32925987 -91150185 + Lx3C LINE L1 6351 6976 0 5 836 1372 304 55 34 chr9 32926076 32927166 -91149006 + L1_Mur3 LINE L1 3447 4516 -1627 5 836 4939 203 17 7 chr9 32927418 32928370 -91147802 - Lx5 LINE L1 -8 7042 6082 5 836 618 26 0 0 chr9 32928529 32928605 -91147567 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 836 336 103 0 0 chr9 32928699 32928757 -91147415 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 836 360 349 66 6 chr9 32929056 32929223 -91146949 - MIR SINE MIR -83 179 3 5 836 1372 71 55 0 chr9 32929326 32929509 -91146663 + B2_Mm1t SINE B2 1 193 0 5 836 282 307 178 39 chr9 32929871 32930152 -91146020 - ORR1E LTR MaLR -10 349 30 5 836 1726 246 73 12 chr9 32930246 32930408 -91145764 - Lx6 LINE L1 -13 7447 7268 5 836 189 107 0 0 chr9 32930408 32930436 -91145736 + (CAAGA)n Simple_repeat Simple_repeat 5 32 0 5 836 1726 246 73 12 chr9 32930436 32930754 -91145418 - Lx6 LINE L1 -193 7267 6939 5 836 809 260 118 16 chr9 32931188 32931434 -91144738 + RLTR20D LTR ERVK 10 280 -288 5 836 324 0 0 0 chr9 32931434 32931470 -91144702 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 836 227 266 84 77 chr9 32932758 32933019 -91143153 - L1MD LINE L1 -1082 5064 4802 5 836 351 338 105 4 chr9 32933147 32933376 -91142796 - L1M4c LINE L1 -1527 5479 5228 5 836 549 274 7 52 chr9 32933456 32933591 -91142581 - RSINE1 SINE B4 -35 130 2 5 836 234 0 0 0 chr9 32933660 32933686 -91142486 + (A)n Simple_repeat Simple_repeat 1 26 0 5 836 29997 77 16 4 chr9 32934020 32938974 -91137198 + L1Md_F LINE L1 168 5196 -687 5 836 2826 54 6 6 chr9 32938974 32939328 -91136844 - IAPEY2_LTR LTR ERVK -3 354 1 5 836 29997 74 19 5 chr9 32939328 32939723 -91136449 + L1Md_F LINE L1 5197 5586 -297 5 836 8038 40 18 1 chr9 32939723 32940702 -91135470 + L1Md_F2 LINE L1 5587 6582 0 5 836 617 339 113 17 chr9 32940761 32941175 -91134997 - L1M4c LINE L1 -4734 2274 1821 5 836 318 259 0 11 chr9 32941180 32941270 -91134902 - L1M4c LINE L1 -5623 1711 1623 5 836 384 327 75 31 chr9 32941567 32941794 -91134378 - L1MD2 LINE L1 -372 5987 5751 5 836 309 335 17 86 chr9 32941840 32942072 -91134100 + ORR1D2 LTR MaLR 125 340 -30 5 836 210 71 0 0 chr9 32942085 32942113 -91134059 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 836 416 104 0 15 chr9 32942117 32942185 -91133987 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 836 375 23 0 0 chr9 32942196 32942240 -91133932 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 836 337 258 100 9 chr9 32942255 32942541 -91133631 - L1MD2 LINE L1 -923 5436 5122 5 836 1660 70 0 0 chr9 32942571 32942786 -91133386 - L1_Mus1 LINE L1 0 6567 6353 5 836 7017 72 11 5 chr9 32942858 32943966 -91132206 - L1_Mus1 LINE L1 0 6654 5460 5 836 760 270 66 27 chr9 32944168 32944503 -91131669 - L1MCa LINE L1 -569 5950 5603 5 836 309 278 60 8 chr9 32944507 32944641 -91131531 - L1MD LINE L1 -815 5331 5191 5 836 850 278 97 35 chr9 32944647 32945243 -91130929 - L1MCa LINE L1 -1545 4776 4144 5 836 4159 88 51 5 chr9 32945457 32945920 -91130252 + MusHAL1 LINE L1 1382 1855 -857 5 836 243 0 0 0 chr9 32945920 32945947 -91130225 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 836 4159 88 51 5 chr9 32945947 32946155 -91130017 + MusHAL1 LINE L1 1856 2083 -629 5 836 22 35 0 0 chr9 32946718 32946747 -91129425 + AT_rich Low_complexity Low_complexity 1 29 0 5 836 401 288 16 85 chr9 32946765 32946894 -91129278 - ID_B1 SINE B4 -21 203 84 5 836 230 185 61 15 chr9 32947129 32947195 -91128977 - L1MCa LINE L1 -4402 2106 2038 5 836 23 54 0 0 chr9 32947215 32947252 -91128920 + AT_rich Low_complexity Low_complexity 1 37 0 5 836 589 253 101 25 chr9 32947400 32947424 -91128748 - B3A SINE B2 -22 176 153 5 836 575 27 0 14 chr9 32947424 32947498 -91128674 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 836 589 253 101 25 chr9 32947498 32947631 -91128541 - B3A SINE B2 -46 152 7 5 836 379 332 85 51 chr9 32947797 32948309 -91127863 - L1MCa LINE L1 -4958 1459 1010 5 836 549 298 48 38 chr9 32948799 32949092 -91127080 + L1MCa LINE L1 533 828 -5923 5 836 355 325 158 26 chr9 32949171 32949405 -91126767 + L1MCa LINE L1 603 867 -5178 5 836 35543 25 0 7 chr9 32951176 32956209 -91119963 + L1Md_T LINE L1 370 5586 -297 5 836 8153 49 1 0 chr9 32956209 32957204 -91118968 + L1Md_T LINE L1 5587 6582 0 5 836 231 250 31 15 chr9 32957751 32957816 -91118356 + ID4_ SINE ID 4 69 -14 5 836 3954 212 24 11 chr9 32958603 32959403 -91116769 + Lx5 LINE L1 6222 7031 -19 5 836 195 42 0 0 chr9 32959403 32959427 -91116745 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 836 346 301 165 0 chr9 32960680 32960813 -91115359 - RSINE1 SINE B4 -8 157 3 6 836 288 70 0 0 chr9 32961025 32961068 -91115104 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 836 657 347 27 68 chr9 32961083 32961377 -91114795 - B4A SINE B4 -7 285 4 6 836 2141 96 12 18 chr9 32961384 32961723 -91114449 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 836 52576 29 6 4 chr9 32961725 32968155 -91108017 - IAPEz-int LTR ERVK -2 6479 34 6 836 2141 96 12 18 chr9 32968165 32968504 -91107668 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 836 3114 56 10 0 chr9 32968703 32969095 -91107077 + MTA_Mm LTR MaLR 1 396 0 6 836 8198 50 52 7 chr9 32969096 32970145 -91106027 + MTA_Mm-int LTR MaLR 2 1098 0 6 836 3220 48 8 0 chr9 32970145 32970538 -91105634 + MTA_Mm LTR MaLR 1 396 0 6 836 9206 90 28 8 chr9 32970730 32972250 -91103922 + Lx3_Mus LINE L1 5448 7001 -8 6 836 447 310 78 44 chr9 32973138 32973344 -91102828 + MER20 DNA MER1_type 4 216 -3 6 836 205 316 0 92 chr9 32974875 32974962 -91101210 + MIR3 SINE MIR 115 193 -15 6 836 189 0 0 0 chr9 32975176 32975197 -91100975 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 6 836 188 336 18 61 chr9 32975657 32975771 -91100401 - L2b LINE L2 -5 3370 3262 6 836 241 274 27 14 chr9 32975984 32976058 -91100114 - B3A SINE B2 -67 131 57 6 836 301 317 5 2 chr9 32976171 32976332 -91099840 - L1MA4A LINE L1 -355 5936 5774 6 836 357 308 90 12 chr9 32976458 32976676 -91099496 - Lx8 LINE L1 -206 7438 7155 6 836 435 19 0 0 chr9 32976676 32976728 -91099444 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 836 609 14 0 0 chr9 32976728 32976797 -91099375 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 836 272 335 147 23 chr9 32976797 32976843 -91099329 - Lx8 LINE L1 -460 7184 7141 6 836 258 345 66 11 chr9 32976849 32976867 -91099305 - RSINE1 SINE B4 -65 100 5 6 836 386 219 82 0 chr9 32976867 32976940 -91099232 - B3 SINE B2 -134 82 4 6 836 433 271 8 15 chr9 32977100 32977231 -91098941 - Lx9 LINE L1 -1671 5973 5844 6 836 524 245 37 11 chr9 32977215 32977431 -91098741 - L1MA6 LINE L1 -439 5861 5634 6 836 346 285 44 0 chr9 32977433 32977591 -91098581 + L1MB3 LINE L1 6007 6171 -12 6 836 357 252 36 58 chr9 32977611 32977750 -91098422 - Lx7 LINE L1 0 7696 7561 6 836 351 0 0 0 chr9 32977751 32977790 -91098382 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 836 336 282 139 31 chr9 32978101 32978324 -91097848 - L1M4b LINE L1 -6432 902 656 6 836 284 366 134 5 chr9 32978359 32978576 -91097596 - L1M4b LINE L1 -6731 603 359 6 836 298 227 68 0 chr9 32978761 32978849 -91097323 - L1M4b LINE L1 -7165 169 76 6 836 286 284 31 49 chr9 32979003 32979166 -91097006 - L1MEe LINE L1 -4417 437 278 6 836 331 264 8 67 chr9 32979200 32979334 -91096838 + CT-rich Low_complexity Low_complexity 3 128 0 6 836 260 271 29 0 chr9 32979340 32979410 -91096762 - ID4 SINE ID -11 72 1 6 836 23 33 0 0 chr9 32979862 32979892 -91096280 + AT_rich Low_complexity Low_complexity 1 30 0 6 836 255 133 0 0 chr9 32980436 32980481 -91095691 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 836 390 21 0 0 chr9 32980481 32980528 -91095644 + (TAG)n Simple_repeat Simple_repeat 3 49 0 6 836 871 317 83 35 chr9 32981476 32981875 -91094297 + MER31A LTR ERV1 35 452 -33 6 836 1476 276 30 36 chr9 32982605 32983079 -91093093 + RLTR16 LTR ERVK 23 493 -12 6 836 373 335 178 44 chr9 32983577 32983613 -91092559 + L2 LINE L2 1948 1984 -1435 6 836 320 0 0 24 chr9 32983613 32983654 -91092518 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 6 836 373 335 178 44 chr9 32983654 32984517 -91091655 + L2 LINE L2 1985 2966 -453 6 836 3772 38 0 0 chr9 32985534 32985982 -91090190 - L1Md_F2 LINE L1 0 6582 6135 6 836 545 234 9 35 chr9 32986547 32986662 -91089510 + PB1D10 SINE Alu 6 117 0 6 836 222 349 70 67 chr9 32986855 32987171 -91089001 - L2c LINE L2 -53 3334 3018 6 836 1768 313 96 25 chr9 32987403 32988399 -91087773 + Lx8 LINE L1 6407 7473 0 6 836 1072 334 146 60 chr9 32988519 32989364 -91086808 - MTEb-int LTR MaLR -650 930 14 6 836 239 219 92 15 chr9 32989395 32989460 -91086712 - MTEb LTR MaLR -19 360 291 6 836 231 103 0 0 chr9 32989548 32989587 -91086585 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 836 544 48 24 0 chr9 32989762 32989846 -91086326 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 6 836 21 57 0 0 chr9 32989885 32989920 -91086252 + AT_rich Low_complexity Low_complexity 1 35 0 6 836 3656 324 65 27 chr9 32989952 32992093 -91084079 - ERVL-B4-int LTR ERVL -485 5229 3008 6 836 382 311 16 16 chr9 32992352 32992535 -91083637 - ERVL-B4-int LTR ERVL -2967 2790 2608 6 836 762 337 23 59 chr9 32992551 32992854 -91083318 - B4A SINE B4 0 292 1 6 836 5881 48 12 3 chr9 32992959 32993693 -91082479 + L1Md_F2 LINE L1 5842 6582 0 6 836 448 329 54 72 chr9 32993708 32993875 -91082297 + RSINE1 SINE B4 2 165 0 6 836 741 285 213 21 chr9 32993931 32994307 -91081865 - MTE2a-int LTR MaLR -594 986 539 6 836 1040 295 120 6 chr9 32994313 32994671 -91081501 - MTE2a-int LTR MaLR -1179 401 3 6 836 932 282 46 30 chr9 32994674 32994937 -91081235 - MTE2a LTR MaLR -2 377 111 6 836 806 328 59 33 chr9 32994953 32995444 -91080728 - ERVL-B4-int LTR ERVL -5165 549 46 6 836 22 0 0 0 chr9 32995796 32995818 -91080354 + AT_rich Low_complexity Low_complexity 1 22 0 6 836 487 312 31 67 chr9 32995948 32996171 -91080001 + B3A SINE B2 2 216 0 6 836 221 98 24 0 chr9 32996201 32996242 -91079930 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 836 522 236 64 41 chr9 32997373 32997545 -91078627 - Tigger5 DNA MER2_type -56 2350 2175 6 836 412 335 38 131 chr9 32997578 32997921 -91078251 - Tigger5 DNA MER2_type -2095 311 1 6 836 180 0 0 0 chr9 32998249 32998269 -91077903 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 836 239 255 0 0 chr9 32998523 32998574 -91077598 + GA-rich Low_complexity Low_complexity 2 52 0 6 836 303 352 60 11 chr9 32998889 32999073 -91077099 + L1M5 LINE L1 2171 2363 -3783 6 836 207 0 0 0 chr9 32999085 32999108 -91077064 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 836 449 320 103 27 chr9 32999384 32999676 -91076496 + L1M5 LINE L1 2711 3024 -3122 6 836 21 0 0 0 chr9 32999678 32999699 -91076473 + AT_rich Low_complexity Low_complexity 1 21 0 6 836 229 213 0 0 chr9 33000078 33000125 -91076047 + L1M3 LINE L1 3528 3574 -2566 1 836 6929 117 4 19 chr9 33000210 33001236 -91074936 + Lx LINE L1 5618 6628 -26 2 836 284 250 0 44 chr9 33001483 33001531 -91074641 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 836 5324 105 26 24 chr9 33001531 33002338 -91073834 - RMER17D2 LTR ERVK 0 809 1 4 836 284 250 0 44 chr9 33002338 33002402 -91073770 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 836 272 331 83 18 chr9 33002409 33002578 -91073594 + L1M5 LINE L1 4841 5020 -1126 6 836 398 345 43 57 chr9 33002932 33003212 -91072960 - MTE2a LTR MaLR -103 276 1 7 836 848 109 0 7 chr9 33003245 33003393 -91072779 + L1_Mus4 LINE L1 6490 6636 0 8 836 229 260 0 0 chr9 33003726 33003776 -91072396 + L1_Mur3 LINE L1 837 886 -6200 9 836 1152 206 30 87 chr9 33003883 33004246 -91071926 + L1_Mur3 LINE L1 984 1360 -4517 9 836 1253 115 39 0 chr9 33004246 33004428 -91071744 + B2_Mm2 SINE B2 2 190 -5 1 836 1152 102 12 206 chr9 33004428 33004597 -91071575 + L1_Mur3 LINE L1 1361 1466 -4411 9 836 7635 172 64 10 chr9 33004945 33006486 -91069686 + L1_Mur3 LINE L1 1463 3086 -2791 9 836 365 172 23 11 chr9 33006468 33006556 -91069616 + MusHAL1 LINE L1 2203 2291 -421 1 836 1846 171 3 24 chr9 33006607 33006948 -91069224 + L1_Mur3 LINE L1 3472 3805 -2072 9 836 283 194 129 0 chr9 33007535 33007597 -91068575 - B4 SINE B4 -222 70 1 1 836 2618 182 65 24 chr9 33007758 33008297 -91067875 - RLTR31_Mm LTR ERVK 0 561 1 1 836 367 259 81 121 chr9 33008494 33008692 -91067480 - B3A SINE B2 0 195 6 1 836 22 35 0 0 chr9 33009183 33009212 -91066960 + AT_rich Low_complexity Low_complexity 1 29 0 1 836 456 86 28 28 chr9 33009545 33009653 -91066519 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 836 635 134 9 9 chr9 33009866 33009979 -91066193 - Lx LINE L1 -3 6651 6539 1 836 198 0 0 0 chr9 33010907 33010929 -91065243 + (A)n Simple_repeat Simple_repeat 1 22 0 1 836 193 146 42 0 chr9 33012152 33012200 -91063972 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 836 5055 30 0 24 chr9 33013677 33014266 -91061906 - L1Md_F3 LINE L1 -2 6582 6008 2 836 306 229 0 41 chr9 33014785 33014858 -91061314 - Charlie24 DNA MER1_type -18 2432 2363 2 836 825 258 142 33 chr9 33014861 33015301 -91060871 + L1MB4 LINE L1 5638 6156 -24 2 836 907 260 30 5 chr9 33015389 33015586 -91060586 - B3 SINE B2 -13 203 2 2 836 4738 41 4 0 chr9 33015663 33016202 -91059970 + L1Md_F2 LINE L1 6030 6570 -12 2 836 671 303 46 57 chr9 33016359 33016797 -91059375 - L1ME1 LINE L1 -211 5968 5536 2 836 536 183 0 0 chr9 33017055 33017148 -91059024 + Lx8 LINE L1 6384 6476 -997 2 836 29 47 0 0 chr9 33018509 33018552 -91057620 + AT_rich Low_complexity Low_complexity 1 43 0 2 836 2531 49 13 19 chr9 33018607 33018893 -91057279 + L1Md_F3 LINE L1 6269 6551 -33 2 836 285 75 0 0 chr9 33018893 33018933 -91057239 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 836 2531 49 13 19 chr9 33018933 33018960 -91057212 + L1Md_F3 LINE L1 6552 6580 -4 2 836 454 252 28 49 chr9 33019453 33019595 -91056577 + MER20 DNA MER1_type 29 167 -52 3 836 180 0 0 0 chr9 33022675 33022695 -91053477 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 3 836 971 161 0 6 chr9 33022695 33022876 -91053296 + CT-rich Low_complexity Low_complexity 1 180 0 3 836 4705 126 35 2 chr9 33023358 33024459 -91051713 - L1_Mus4 LINE L1 -325 6311 5176 3 836 2169 106 26 0 chr9 33024469 33024781 -91051391 + L1_Mus4 LINE L1 6314 6633 -3 3 836 546 229 85 25 chr9 33024978 33025178 -91050994 + L1MB7 LINE L1 5725 5941 -237 3 836 2576 91 102 3 chr9 33025184 33025558 -91050614 - IAPLTR2a LTR ERVK 0 411 1 3 836 6258 35 5 19 chr9 33025558 33026314 -91049858 - IAPEz-int LTR ERVK 0 6481 5736 3 836 2172 72 7 0 chr9 33026313 33026589 -91049583 - IAPEz-int LTR ERVK -4845 1636 1359 3 836 3851 56 24 18 chr9 33026589 33027081 -91049091 - IAPEz-int LTR ERVK -5819 662 168 3 836 228 321 0 0 chr9 33027081 33027134 -91049038 - RLTR27 LTR ERVK -34 275 223 3 836 231 273 0 0 chr9 33027162 33027206 -91048966 - RLTR27 LTR ERVK -34 275 232 3 836 301 54 0 0 chr9 33027206 33027243 -91048929 - MMERVK10C-int LTR ERVK -7400 181 145 3 836 237 321 0 0 chr9 33027243 33027299 -91048873 - RLTR27 LTR ERVK -34 275 220 3 836 388 101 163 33 chr9 33027299 33027391 -91048781 - IAPEz-int LTR ERVK -6369 112 9 3 836 2522 99 102 3 chr9 33027392 33027766 -91048406 - IAPLTR2a LTR ERVK 0 411 1 3 836 703 262 8 40 chr9 33027769 33028016 -91048156 + L1MB7 LINE L1 5945 6183 -1 3 836 22 0 0 0 chr9 33029236 33029258 -91046914 + AT_rich Low_complexity Low_complexity 1 22 0 3 836 373 336 26 32 chr9 33029261 33029415 -91046757 - RSINE1 SINE B4 -2 163 11 4 837 1270 176 22 26 chr9 33030764 33030991 -91045181 - URR1A DNA MER1_type 0 226 1 4 837 247 335 21 9 chr9 33031219 33031316 -91044856 - PB1D10 SINE Alu -8 112 12 4 837 307 245 216 94 chr9 33031825 33031996 -91044176 - B3A SINE B2 -2 196 5 4 837 641 256 63 0 chr9 33032037 33032228 -91043944 + ORR1D2 LTR MaLR 164 366 -4 4 837 581 337 6 0 chr9 33032232 33032398 -91043774 - B4 SINE B4 -42 250 84 4 837 22 35 0 0 chr9 33032573 33032602 -91043570 + AT_rich Low_complexity Low_complexity 1 29 0 4 837 437 176 0 56 chr9 33033170 33033278 -91042894 - Lx4B LINE L1 0 7058 6957 4 837 2552 93 12 0 chr9 33033642 33033965 -91042207 - ORR1A2 LTR MaLR 0 327 1 4 837 235 309 0 0 chr9 33034022 33034090 -91042082 - ID4_ SINE ID -8 75 8 4 837 255 283 162 0 chr9 33034154 33034270 -91041902 + MIR SINE MIR 34 184 -84 5 837 249 222 12 12 chr9 33035024 33035106 -91041066 + (CAAA)n Simple_repeat Simple_repeat 2 83 0 5 837 230 0 33 0 chr9 33035218 33035248 -91040924 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 837 1094 58 43 7 chr9 33035248 33035388 -91040784 - B1_Mus2 SINE Alu -1 146 2 5 837 252 349 27 36 chr9 33036243 33036353 -91039819 - PB1D10 SINE Alu -8 109 1 5 837 314 98 20 0 chr9 33036388 33036439 -91039733 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 837 251 204 20 0 chr9 33036484 33036533 -91039639 - B3 SINE B2 -163 53 4 5 837 342 0 0 0 chr9 33036671 33036709 -91039463 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 837 414 0 0 0 chr9 33036709 33036754 -91039418 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 837 295 208 0 125 chr9 33037629 33037717 -91038455 + MT2B LTR ERVL 164 240 -361 5 837 582 165 10 20 chr9 33037641 33037740 -91038432 + PB1D9 SINE Alu 12 109 -11 6 837 1309 280 98 40 chr9 33037751 33038346 -91037826 - Lx9 LINE L1 0 7644 7016 6 837 625 25 12 0 chr9 33038504 33038584 -91037588 + L1Md_T LINE L1 6500 6580 -2 6 837 315 0 0 0 chr9 33038598 33038633 -91037539 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 837 4308 211 64 44 chr9 33038672 33039674 -91036498 + RMER1B Other Other 43 1064 -2 6 837 277 22 0 62 chr9 33039768 33039816 -91036356 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 6 837 777 65 9 0 chr9 33039823 33039930 -91036242 - B1_Mus2 SINE Alu 0 147 40 6 837 293 175 0 17 chr9 33039880 33039938 -91036234 - 4.5SRNA scRNA scRNA -8 86 30 6 837 362 79 16 0 chr9 33040058 33040121 -91036051 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 837 387 0 0 0 chr9 33040121 33040164 -91036008 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 837 403 320 31 8 chr9 33040170 33040299 -91035873 - B1F2 SINE Alu -13 136 5 7 837 181 176 18 73 chr9 33040749 33040804 -91035368 + MIR SINE MIR 211 262 0 7 837 235 246 206 32 chr9 33041171 33041297 -91034875 - MIRc SINE MIR -32 236 89 7 837 565 323 28 92 chr9 33041713 33041930 -91034242 - ORR1E LTR MaLR -169 201 1 7 837 1831 177 44 41 chr9 33042280 33042646 -91033526 - ORR1B2 LTR MaLR 0 367 1 7 837 8628 174 31 142 chr9 33042646 33044483 -91031689 - ORR1B2-int LTR MaLR 0 1963 333 7 837 315 0 0 0 chr9 33044483 33044518 -91031654 + (TGG)n Simple_repeat Simple_repeat 1 35 0 7 837 8628 174 31 142 chr9 33044518 33044885 -91031287 - ORR1B2-int LTR MaLR -1631 332 2 7 837 1712 158 89 22 chr9 33044890 33045214 -91030958 - ORR1B2 LTR MaLR -8 386 41 7 837 24 0 0 0 chr9 33046347 33046371 -91029801 + AT_rich Low_complexity Low_complexity 1 24 0 7 837 218 156 22 0 chr9 33047914 33047959 -91028213 + CT-rich Low_complexity Low_complexity 2 47 0 7 837 210 283 34 7 chr9 33049625 33049693 -91026479 - MIR SINE MIR -125 143 77 7 837 391 357 112 19 chr9 33051267 33051535 -91024637 + L2 LINE L2 2729 3021 -398 7 837 695 294 143 55 chr9 33052091 33052832 -91023340 + L1MC4 LINE L1 6585 7390 -652 8 837 364 325 61 64 chr9 33053116 33053461 -91022711 + L1MC4 LINE L1 7688 8031 -11 8 837 443 238 0 0 chr9 33053685 33053765 -91022407 + ID4_ SINE ID 4 83 0 8 837 1405 205 114 9 chr9 33054037 33054371 -91021801 - ORR1D1 LTR MaLR -5 369 1 8 837 21 36 0 0 chr9 33054997 33055025 -91021147 + AT_rich Low_complexity Low_complexity 1 28 0 8 837 669 234 112 38 chr9 33055113 33055353 -91020819 + L1_Mur3 LINE L1 497 754 -6974 8 837 4297 187 22 18 chr9 33055453 33056233 -91019939 + RMER13A LTR ERVK 74 856 -4 8 837 7471 190 53 44 chr9 33056245 33056692 -91019480 + L1_Mur3 LINE L1 826 1296 -6432 8 837 2907 54 49 0 chr9 33056692 33057062 -91019110 - RLTR10 LTR ERVK -2 388 1 8 837 7471 163 59 190 chr9 33057062 33057200 -91018972 + L1_Mur3 LINE L1 1297 1504 -4376 8 837 1216 84 6 6 chr9 33057200 33057380 -91018792 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 837 7471 163 59 190 chr9 33057380 33060097 -91016075 + L1_Mur3 LINE L1 1505 3770 -2110 8 837 1733 175 9 71 chr9 33061762 33062199 -91013973 + RMER17C LTR ERVK 1 410 0 8 837 317 324 139 22 chr9 33062765 33062945 -91013227 - LTR16A LTR ERVL -163 288 88 8 837 235 234 0 0 chr9 33063564 33063611 -91012561 - MER46C DNA MER2_type -12 326 280 9 837 387 0 0 0 chr9 33063883 33063926 -91012246 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 837 1305 251 99 40 chr9 33064025 33064499 -91011673 - RMER5 LTR ERV1 0 534 33 9 837 581 40 0 13 chr9 33064568 33064645 -91011527 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 9 837 710 216 16 0 chr9 33064645 33064770 -91011402 - B1_Mur1 SINE Alu -14 135 9 9 837 398 319 51 15 chr9 33064658 33064795 -91011377 - B4 SINE B4 -82 210 69 9 837 222 37 0 0 chr9 33065471 33065498 -91010674 + (T)n Simple_repeat Simple_repeat 1 27 0 9 837 549 311 51 0 chr9 33065874 33066051 -91010121 - MIR SINE MIR 0 262 77 9 837 280 243 0 13 chr9 33066711 33066786 -91009386 + (TA)n Simple_repeat Simple_repeat 2 75 0 9 837 340 281 141 20 chr9 33066816 33066990 -91009182 - B3A SINE B2 -9 207 1 9 837 658 331 105 15 chr9 33067039 33067364 -91008808 - MLT2D LTR ERVL -60 354 1 1 837 304 104 15 15 chr9 33068465 33068533 -91007639 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 1 837 284 305 126 44 chr9 33068854 33069036 -91007136 - MIRb SINE MIR -66 202 6 1 837 1180 94 72 6 chr9 33071011 33071192 -91004980 - B2_Mm2 SINE B2 0 195 3 1 837 230 309 90 26 chr9 33071513 33071669 -91004503 + L2 LINE L2 2037 2202 -1217 1 837 541 339 57 13 chr9 33071725 33071955 -91004217 - MIR SINE MIR -3 259 20 1 837 330 182 0 0 chr9 33073026 33073092 -91003080 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 837 378 0 0 0 chr9 33073891 33073933 -91002239 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 837 181 239 0 21 chr9 33075296 33075343 -91000829 + L3 LINE CR1 1080 1125 -3364 1 837 201 74 0 0 chr9 33075835 33075862 -91000310 + (CATG)n Simple_repeat Simple_repeat 3 29 0 1 837 185 189 81 0 chr9 33076086 33076123 -91000049 + L2b LINE L2 3324 3363 -12 1 837 375 256 32 13 chr9 33076348 33076502 -90999670 - Lx9 LINE L1 -2 7642 7486 1 837 343 294 6 64 chr9 33076544 33076700 -90999472 - B1_Mur1 SINE Alu -1 148 2 1 837 278 285 90 28 chr9 33078986 33079163 -90997009 + L1MC2 LINE L1 835 1022 -5486 1 837 349 295 10 40 chr9 33079200 33079299 -90996873 + ID_B1 SINE B4 125 220 -4 1 837 189 0 0 0 chr9 33079641 33079662 -90996510 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 837 413 316 102 18 chr9 33079785 33080059 -90996113 + L1MC2 LINE L1 1615 1911 -4597 1 837 279 54 0 0 chr9 33080145 33080182 -90995990 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 837 303 315 130 5 chr9 33080244 33080429 -90995743 + L1MC2 LINE L1 2166 2373 -4135 1 837 1308 304 116 40 chr9 33080457 33082015 -90994157 + L1MC2 LINE L1 2402 4078 -2243 1 837 510 108 0 0 chr9 33082118 33082201 -90993971 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 837 851 319 99 54 chr9 33082652 33082746 -90993426 + L1MC2 LINE L1 4459 4550 -1771 1 837 1095 82 0 7 chr9 33082746 33082893 -90993279 + B1_Mus1 SINE Alu 2 147 -1 1 837 851 319 99 54 chr9 33082893 33082907 -90993265 + L1MC2 LINE L1 4551 4551 -1770 1 837 186 43 0 0 chr9 33082907 33082930 -90993242 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 837 851 304 107 49 chr9 33082930 33084006 -90992166 + L1MC2 LINE L1 4551 5703 -2257 1 837 4560 45 0 2 chr9 33084005 33084587 -90991585 - L1Md_F2 LINE L1 0 6582 6002 1 837 26955 72 1 9 chr9 33084617 33088415 -90987757 - L1_Mm LINE L1 0 5883 2120 1 837 1057 278 31 42 chr9 33088415 33088866 -90987306 + L1MC2 LINE L1 5701 6146 -373 1 837 372 31 0 15 chr9 33088913 33088978 -90987194 + L1Md_F3 LINE L1 6521 6584 0 1 837 294 286 104 12 chr9 33089130 33089303 -90986869 + L1MC2 LINE L1 6361 6549 -1411 1 837 277 325 119 77 chr9 33089482 33089809 -90986363 + ORR1D1 LTR MaLR 21 361 -13 1 837 270 81 0 0 chr9 33089859 33089896 -90986276 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1 837 871 271 66 70 chr9 33089953 33090239 -90985933 + B4 SINE B4 2 286 -6 1 837 387 0 0 0 chr9 33090244 33090287 -90985885 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 837 339 155 17 0 chr9 33091554 33091612 -90984560 - MTD LTR MaLR -282 137 79 1 837 1559 224 60 8 chr9 33091692 33092075 -90984097 - MTD LTR MaLR -16 403 1 1 837 369 0 0 0 chr9 33092148 33092189 -90983983 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 837 396 0 0 0 chr9 33093580 33093624 -90982548 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 837 439 17 33 0 chr9 33093624 33093683 -90982489 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 837 726 280 130 40 chr9 33094249 33094573 -90981599 - ORR1E LTR MaLR -6 353 1 1 837 4940 158 110 41 chr9 33094847 33095663 -90980509 + RLTR25A LTR ERVK 1 880 -223 1 837 798 62 0 0 chr9 33095663 33095776 -90980396 + (CA)n Simple_repeat Simple_repeat 2 114 0 1 837 4940 158 110 41 chr9 33095776 33095990 -90980182 + RLTR25A LTR ERVK 881 1102 -1 1 837 210 71 0 0 chr9 33095992 33096020 -90980152 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 837 353 283 22 34 chr9 33096022 33096201 -90979971 + (CATA)n Simple_repeat Simple_repeat 4 180 0 1 837 285 29 0 0 chr9 33096233 33096267 -90979905 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 837 345 100 0 0 chr9 33096326 33096376 -90979796 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 837 1086 86 0 0 chr9 33097595 33097746 -90978426 + (TA)n Simple_repeat Simple_repeat 2 152 0 1 837 1907 145 19 25 chr9 33097769 33098088 -90978084 + ORR1A2 LTR MaLR 3 319 -8 1 837 313 134 73 15 chr9 33098092 33098160 -90978012 + ORR1A2-int LTR MaLR 1 72 -1437 1 837 615 129 0 38 chr9 33098145 33098250 -90977922 + ORR1A2-int LTR MaLR 1863 1963 0 1 837 2270 120 3 0 chr9 33098251 33098576 -90977596 + ORR1A2 LTR MaLR 2 327 0 1 837 201 215 31 0 chr9 33098577 33098642 -90977530 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 837 435 309 58 7 chr9 33098642 33098779 -90977393 + MLT1C LTR MaLR 324 467 0 1 837 258 310 58 70 chr9 33099284 33099440 -90976732 - RSINE1 SINE B4 -8 157 4 1 837 960 249 86 47 chr9 33099634 33099972 -90976200 - ORR1E LTR MaLR -8 351 1 1 837 540 0 0 0 chr9 33100314 33100374 -90975798 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 837 693 322 11 22 chr9 33100381 33100562 -90975610 - B3A SINE B2 -16 182 4 1 837 641 73 10 0 chr9 33100573 33100669 -90975503 + (TG)n Simple_repeat Simple_repeat 2 98 0 1 837 1349 98 0 0 chr9 33102286 33102470 -90973702 - L1_Mus1 LINE L1 0 6567 6384 1 837 683 233 45 39 chr9 33102852 33103031 -90973141 - MTE2a LTR MaLR -38 341 162 1 837 252 0 0 0 chr9 33104553 33104581 -90971591 + (T)n Simple_repeat Simple_repeat 1 28 0 1 837 305 326 121 60 chr9 33104583 33104831 -90971341 + ORR1E LTR MaLR 1 263 -96 1 837 576 286 24 12 chr9 33104957 33105123 -90971049 + MLT1D LTR MaLR 338 505 0 1 837 225 61 0 0 chr9 33105160 33105193 -90970979 - MLT1D LTR MaLR -43 462 430 1 837 189 305 64 45 chr9 33105242 33105352 -90970820 + L2c LINE L2 3269 3380 -7 1 837 1952 0 0 0 chr9 33105578 33105801 -90970371 + L1_Mm LINE L1 5364 5586 -297 1 837 9093 1 0 0 chr9 33105801 33106837 -90969335 + L1Md_A LINE L1 5587 6582 0 1 837 210 319 14 0 chr9 33107238 33107310 -90968862 + MIRb SINE MIR 90 162 -106 1 837 1890 112 20 81 chr9 33107390 33107738 -90968434 - ORR1A4 LTR MaLR 0 329 3 1 837 488 326 56 125 chr9 33108179 33108508 -90967664 + ORR1E LTR MaLR 1 305 -54 1 837 225 196 0 0 chr9 33108515 33108561 -90967611 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 1 837 297 51 0 0 chr9 33108574 33108613 -90967559 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 837 897 232 91 39 chr9 33108632 33109058 -90967114 - MT2B LTR ERVL -85 516 1 1 837 276 266 63 11 chr9 33109059 33109154 -90967018 + ORR1E LTR MaLR 271 370 0 1 837 354 211 36 140 chr9 33109532 33109753 -90966419 + L1MC LINE L1 4196 4393 -1753 1 837 1866 229 31 5 chr9 33109754 33110141 -90966031 - MTD LTR MaLR 0 419 23 1 837 24 32 0 0 chr9 33110142 33110173 -90965999 + AT_rich Low_complexity Low_complexity 1 31 0 1 837 321 289 60 22 chr9 33110206 33110390 -90965782 + L1MC LINE L1 4427 4617 -1529 1 837 210 37 0 0 chr9 33110461 33110488 -90965684 + (A)n Simple_repeat Simple_repeat 1 27 0 1 837 296 253 154 18 chr9 33110817 33110986 -90965186 + L1MC LINE L1 5083 5274 -872 1 837 21 0 0 0 chr9 33111075 33111096 -90965076 + AT_rich Low_complexity Low_complexity 1 21 0 1 837 235 256 102 18 chr9 33111154 33111321 -90964851 + L1MD LINE L1 3167 3347 -2799 1 837 736 286 112 25 chr9 33111437 33112007 -90964165 - L1MDa LINE L1 -1242 5295 4676 1 837 331 349 88 12 chr9 33112255 33112426 -90963746 - L1MDa LINE L1 -6192 441 258 1 837 397 350 32 24 chr9 33112782 33112905 -90963267 + ID_B1 SINE B4 81 204 -20 1 837 276 244 89 0 chr9 33113600 33113735 -90962437 + L1MA4 LINE L1 5706 5923 -377 1 837 186 128 0 0 chr9 33114736 33114775 -90961397 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 837 814 288 88 3 chr9 33114873 33115327 -90960845 + Lx7 LINE L1 5376 5897 -1799 1 837 249 299 0 0 chr9 33116567 33116694 -90959478 + (TG)n Simple_repeat Simple_repeat 2 128 0 1 837 226 329 0 0 chr9 33116780 33116853 -90959319 - ID4_ SINE ID -10 73 1 1 837 323 232 34 34 chr9 33116870 33116959 -90959213 - PB1D10 SINE Alu -7 110 22 1 837 3067 185 197 72 chr9 33117412 33117845 -90958327 - RMER17B LTR ERVK 0 958 426 1 837 1114 92 0 0 chr9 33117845 33117986 -90958186 + B1_Mus1 SINE Alu 1 141 -7 1 837 3067 185 197 72 chr9 33117986 33118034 -90958138 - RMER17B LTR ERVK -533 425 404 1 837 720 0 0 0 chr9 33118034 33118114 -90958058 + (GAGAA)n Simple_repeat Simple_repeat 2 81 0 1 837 3067 185 197 72 chr9 33118114 33118482 -90957690 - RMER17B LTR ERVK -555 403 1 1 837 306 0 0 0 chr9 33118493 33118527 -90957645 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 837 2723 27 6 37 chr9 33120466 33120818 -90955354 + L1_Mus1 LINE L1 6227 6567 0 1 837 222 292 21 0 chr9 33121756 33121804 -90954368 - ID4 SINE ID -32 51 3 1 837 25 0 0 0 chr9 33121932 33121957 -90954215 + AT_rich Low_complexity Low_complexity 1 25 0 1 837 351 0 0 0 chr9 33122137 33122176 -90953996 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 837 282 283 64 28 chr9 33122244 33122353 -90953819 + Charlie2a DNA MER1_type 33 145 -2716 1 837 714 239 7 0 chr9 33122382 33122520 -90953652 - B1_Mur3 SINE Alu -5 144 6 1 837 442 306 0 64 chr9 33122520 33122534 -90953638 - ID_B1 SINE B4 0 219 78 1 837 261 0 0 0 chr9 33123157 33123186 -90952986 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 837 1068 99 0 0 chr9 33123187 33123329 -90952843 - B1_Mm SINE Alu -4 143 2 1 837 276 211 86 32 chr9 33124473 33124566 -90951606 + PB1D10 SINE Alu 18 115 -2 1 837 396 311 148 46 chr9 33125841 33125956 -90950216 + MLT1D LTR MaLR 23 147 -358 1 837 375 41 0 0 chr9 33125956 33126005 -90950167 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 837 396 311 148 46 chr9 33126005 33126327 -90949845 + MLT1D LTR MaLR 148 504 -1 1 837 1747 144 7 21 chr9 33126531 33127075 -90949097 - RLTR1C LTR ERV1 0 605 1 1 837 316 272 125 90 chr9 33127975 33128300 -90947872 + MLT1A1 LTR MaLR 23 396 -12 1 837 210 239 0 0 chr9 33128503 33128574 -90947598 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 837 594 63 0 0 chr9 33128784 33128863 -90947309 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 837 257 305 36 12 chr9 33129045 33129128 -90947044 - PB1D7 SINE Alu -2 118 34 1 837 21 0 0 0 chr9 33129271 33129292 -90946880 + GC_rich Low_complexity Low_complexity 1 21 0 1 837 244 280 39 26 chr9 33129528 33129605 -90946567 - ID4 SINE ID -2 81 4 1 837 27 0 0 0 chr9 33129720 33129747 -90946425 + AT_rich Low_complexity Low_complexity 1 27 0 2 837 465 229 157 22 chr9 33129840 33130063 -90946109 - L1MC4 LINE L1 -4881 1334 1082 2 837 494 271 32 8 chr9 33130141 33130264 -90945908 - B1F SINE Alu -23 126 1 2 837 272 304 18 0 chr9 33130271 33130383 -90945789 - L1MC4 LINE L1 -5259 956 843 2 837 848 235 102 0 chr9 33130778 33130974 -90945198 - B3 SINE B2 0 216 1 2 837 474 128 0 0 chr9 33131177 33131246 -90944926 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 2 837 1296 112 16 0 chr9 33131246 33131434 -90944738 - B2_Mm2 SINE B2 -4 191 1 2 837 474 128 0 0 chr9 33131434 33131442 -90944730 + (TTCC)n Simple_repeat Simple_repeat 4 11 0 2 837 231 260 58 39 chr9 33132128 33132232 -90943940 + Zaphod2 DNA Tip100 2380 2485 -1039 2 837 197 319 63 11 chr9 33132471 33132566 -90943606 - MIRb SINE MIR -16 252 153 2 837 306 73 0 0 chr9 33132938 33132979 -90943193 + (TCC)n Simple_repeat Simple_repeat 1 41 0 2 837 960 257 48 0 chr9 33133126 33133336 -90942836 + RCHARR1 DNA MER1_type 170 389 -585 2 837 908 224 31 0 chr9 33133430 33133622 -90942550 + RCHARR1 DNA MER1_type 560 757 -217 2 837 1904 52 0 0 chr9 33133622 33133870 -90942302 - L1_Mm LINE L1 -636 5247 5000 2 837 1667 68 9 0 chr9 33133870 33134092 -90942080 + L1Md_F3 LINE L1 6359 6582 -2 2 837 1390 55 22 11 chr9 33134166 33134351 -90941821 - B2_Mm2 SINE B2 -8 187 1 2 837 180 0 0 0 chr9 33134406 33134426 -90941746 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 837 438 296 25 68 chr9 33134433 33134596 -90941576 - RSINE1 SINE B4 -8 157 2 2 837 266 319 32 40 chr9 33135055 33135179 -90940993 - Lx8 LINE L1 -274 7199 7077 2 837 272 312 24 16 chr9 33135513 33135640 -90940532 + L1MA5 LINE L1 5872 5999 -301 2 837 250 277 45 9 chr9 33135692 33135861 -90940311 + L1MA5 LINE L1 6110 6290 -13 2 837 608 355 82 79 chr9 33135986 33136592 -90939580 + MLT1J-int LTR MaLR 308 915 -472 2 837 2400 84 0 0 chr9 33136638 33136971 -90939201 - L1_Mus3 LINE L1 -503 6135 5803 2 837 385 217 14 5 chr9 33137136 33137223 -90938949 + PB1D7 SINE Alu 10 95 -25 2 837 421 346 37 47 chr9 33138021 33138236 -90937936 + ID_B1 SINE B4 3 215 -9 2 837 305 351 9 9 chr9 33138388 33138500 -90937672 - MTEb LTR MaLR 0 379 268 2 837 276 286 13 25 chr9 33138702 33138781 -90937391 - RMER15 LTR ERVL -161 414 337 2 837 263 331 57 41 chr9 33139148 33139271 -90936901 - MLT1A1 LTR MaLR -271 137 13 2 837 315 96 0 0 chr9 33139328 33139380 -90936792 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 837 360 0 0 0 chr9 33139380 33139420 -90936752 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 837 741 225 49 7 chr9 33139426 33139569 -90936603 - B3A SINE B2 -48 150 2 2 837 719 263 43 19 chr9 33139658 33139867 -90936305 - ID_B1 SINE B4 -10 214 1 2 837 933 179 41 91 chr9 33140839 33141060 -90935112 - ORR1C2 LTR MaLR 0 384 175 2 837 371 121 0 29 chr9 33141064 33141132 -90935040 + GA-rich Low_complexity Low_complexity 1 66 0 2 837 1060 194 18 26 chr9 33141642 33141869 -90934303 + URR1B DNA MER1_type 1 225 0 2 837 276 30 0 0 chr9 33142051 33142084 -90934088 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2 837 1024 117 7 0 chr9 33142084 33142229 -90933943 - B1_Mus1 SINE Alu -2 146 1 2 837 211 253 0 27 chr9 33142871 33142927 -90933245 - MIR SINE MIR -99 169 119 2 837 3144 58 2 8 chr9 33145542 33145938 -90930234 + MTA_Mm LTR MaLR 1 394 -2 2 837 6947 76 45 71 chr9 33145938 33147063 -90929109 + MTA_Mm-int LTR MaLR 1 1098 0 2 837 3097 63 5 8 chr9 33147063 33147460 -90928712 + MTA_Mm LTR MaLR 1 396 0 2 837 3684 206 41 5 chr9 33147713 33148463 -90927709 + Lx5 LINE L1 6262 7038 -12 2 837 341 117 17 0 chr9 33148468 33148528 -90927644 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 2 837 1142 75 7 0 chr9 33149049 33149195 -90926977 + B1_Mus1 SINE Alu 2 148 0 2 837 468 51 0 0 chr9 33149208 33149267 -90926905 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 2 837 313 276 124 0 chr9 33149269 33149374 -90926798 + MER5A DNA MER1_type 61 178 -11 2 837 229 328 0 29 chr9 33149715 33149784 -90926388 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 2 837 258 360 86 6 chr9 33149928 33150090 -90926082 - LTR37B LTR ERV1 -248 220 46 2 837 275 354 53 26 chr9 33150806 33150957 -90925215 + Charlie4a DNA MER1_type 23 177 -331 2 837 258 213 0 0 chr9 33150960 33151054 -90925118 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 2 837 753 280 16 65 chr9 33151119 33151425 -90924747 - B4A SINE B4 0 292 2 2 837 520 277 81 19 chr9 33151468 33151678 -90924494 + Charlie4a DNA MER1_type 283 505 -3 2 837 435 38 0 0 chr9 33151895 33151948 -90924224 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 837 281 340 51 58 chr9 33153979 33154135 -90922037 - LTR82A LTR ERVL -80 792 638 2 837 525 16 0 0 chr9 33154249 33154311 -90921861 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 837 2709 258 42 42 chr9 33154817 33155635 -90920537 - L1_Mur3 LINE L1 -236 5644 4825 2 837 787 186 7 0 chr9 33155635 33155775 -90920397 + B1_Mus1 SINE Alu 1 141 -7 2 837 330 26 0 0 chr9 33155781 33155820 -90920352 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 837 2709 258 42 42 chr9 33155820 33156124 -90920048 - L1_Mur3 LINE L1 -1056 4824 4514 2 837 2096 331 51 58 chr9 33156132 33157653 -90918519 + Lx8 LINE L1 5672 7181 -292 2 837 1139 261 139 9 chr9 33157885 33158222 -90917950 - MTD LTR MaLR -38 381 1 2 837 180 0 0 0 chr9 33158377 33158397 -90917775 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 837 2312 89 6 30 chr9 33159183 33159262 -90916910 + L1_Mus2 LINE L1 6241 6311 -255 2 837 2991 79 5 2 chr9 33159262 33159657 -90916515 + MTA_Mm LTR MaLR 1 396 0 2 837 2312 89 6 30 chr9 33159657 33159911 -90916261 + L1_Mus2 LINE L1 6312 6566 0 2 837 231 339 82 57 chr9 33160861 33160983 -90915189 + PB1 SINE Alu 3 127 0 2 104 480 278 119 0 chr9 33161111 33161262 -90914910 - RMER30 DNA MER1_type -19 183 15 2 838 2060 261 119 34 chr9 33161465 33162235 -90913937 - RCHARR1 DNA MER1_type -1 973 138 2 838 514 182 91 0 chr9 33162232 33162331 -90913841 + B3 SINE B2 109 216 0 2 838 363 318 29 71 chr9 33162353 33162563 -90913609 - RMER2 LTR ERV1 0 567 367 2 838 287 127 0 27 chr9 33162810 33162883 -90913289 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 2 838 21 0 0 0 chr9 33162950 33162971 -90913201 + AT_rich Low_complexity Low_complexity 1 21 0 2 838 2456 74 6 0 chr9 33162971 33163297 -90912875 - L1_Mus1 LINE L1 0 6567 6240 2 838 279 312 95 40 chr9 33163519 33163719 -90912453 - Lx9 LINE L1 -1598 6046 5836 2 838 1502 256 50 12 chr9 33163825 33164224 -90911948 + RCHARR1 DNA MER1_type 66 479 -495 2 838 304 253 94 10 chr9 33164222 33164318 -90911854 - B3A SINE B2 -94 104 1 2 838 579 259 28 14 chr9 33164329 33164474 -90911698 - B1F SINE Alu -1 148 2 2 838 21 0 0 0 chr9 33165018 33165039 -90911133 + AT_rich Low_complexity Low_complexity 1 21 0 2 838 249 306 70 61 chr9 33165254 33165369 -90910803 + ORR1D2 LTR MaLR 1 116 -263 2 838 269 304 57 29 chr9 33165591 33165696 -90910476 + ORR1D2 LTR MaLR 263 370 0 2 838 410 0 20 0 chr9 33166174 33166224 -90909948 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2 838 253 317 37 0 chr9 33169458 33169540 -90906632 - MIRb SINE MIR -41 227 143 2 838 1257 245 20 39 chr9 33169829 33170135 -90906037 + ORR1D1 LTR MaLR 5 304 -70 2 838 561 201 0 3 chr9 33170140 33170251 -90905921 + MTC LTR MaLR 3 111 -285 2 838 216 24 48 24 chr9 33170257 33170299 -90905873 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 838 4663 82 2 5 chr9 33170303 33170926 -90905246 - L1_Mus2 LINE L1 -1 6565 5945 2 838 328 158 0 0 chr9 33170932 33170989 -90905183 + ORR1D1 LTR MaLR 316 372 -2 2 838 399 246 16 47 chr9 33171339 33171467 -90904705 - Lx8 LINE L1 -96 7377 7254 2 838 1895 199 66 20 chr9 33171532 33171927 -90904245 + MTC LTR MaLR 1 413 -8 2 838 631 279 51 59 chr9 33172088 33172442 -90903730 - L1MC3 LINE L1 -120 7665 7315 2 838 226 208 42 0 chr9 33172652 33172724 -90903448 - L1MC3 LINE L1 -978 7017 6943 2 838 21 57 0 0 chr9 33172784 33172819 -90903353 + AT_rich Low_complexity Low_complexity 1 35 0 2 838 540 275 97 39 chr9 33172833 33173215 -90902957 - L1MA7 LINE L1 -2 6289 5886 2 838 281 291 116 87 chr9 33173245 33173486 -90902686 - L1MC3 LINE L1 -954 6831 6584 2 838 310 319 184 13 chr9 33173539 33173844 -90902328 - L1MC3 LINE L1 -1299 6486 6130 2 838 726 289 166 19 chr9 33173854 33174239 -90901933 - MTC LTR MaLR 0 421 43 2 838 32 0 0 0 chr9 33174279 33174311 -90901861 + AT_rich Low_complexity Low_complexity 1 32 0 2 838 1073 275 22 33 chr9 33175471 33175742 -90900430 - MTE2b LTR MaLR -111 268 1 2 838 316 253 12 0 chr9 33175748 33175831 -90900341 - L1MC3 LINE L1 -1672 6113 6030 2 838 461 349 45 18 chr9 33175850 33176136 -90900036 + L1MCa LINE L1 6 299 -6209 2 838 322 293 46 13 chr9 33176362 33176514 -90899658 + L1MCa LINE L1 649 805 -5703 2 838 630 353 8 25 chr9 33176713 33176951 -90899221 + RMER15 LTR ERVL 274 507 -68 2 838 312 377 89 44 chr9 33177286 33177511 -90898661 - ORR1E LTR MaLR -105 254 20 2 838 428 286 100 88 chr9 33177521 33178264 -90897908 + L1MCa LINE L1 932 1683 -4825 2 838 2337 265 113 44 chr9 33178411 33180020 -90896152 + L1MCa LINE L1 2393 4112 -2209 2 838 1218 268 34 10 chr9 33180069 33180367 -90895805 + MTD LTR MaLR 12 316 -103 2 838 3281 239 116 89 chr9 33180365 33181586 -90894586 + MTD-int LTR MaLR 6 1258 0 2 838 1131 291 49 67 chr9 33181590 33181995 -90894177 + MTD LTR MaLR 9 406 -13 2 838 236 284 33 33 chr9 33182022 33182142 -90894030 + L1MCa LINE L1 4167 4286 -2035 2 838 688 269 103 18 chr9 33182148 33182426 -90893746 + L1MCa LINE L1 4506 4800 -1521 2 838 381 93 0 0 chr9 33182426 33182480 -90893692 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 838 688 269 103 18 chr9 33182480 33182636 -90893536 + L1MCa LINE L1 4801 4976 -1345 2 838 322 312 0 0 chr9 33182641 33182718 -90893454 + PB1D10 SINE Alu 35 111 -6 2 838 1217 299 86 62 chr9 33182723 33183851 -90892321 + Lx8 LINE L1 4723 5905 -1568 2 838 858 70 0 0 chr9 33184074 33184188 -90891984 + (CTA)n Simple_repeat Simple_repeat 1 114 0 2 838 309 331 7 22 chr9 33184200 33184339 -90891833 + L1MCa LINE L1 4978 5114 -1207 2 838 3217 173 53 8 chr9 33184355 33184973 -90891199 - RMER6A LTR ERVK 0 756 111 2 838 268 130 0 143 chr9 33185156 33185219 -90890953 - ORR1A4 LTR MaLR 0 329 276 2 838 410 280 166 45 chr9 33185252 33185397 -90890775 + L1MCa LINE L1 5222 5379 -942 2 838 1598 31 5 0 chr9 33185397 33185592 -90890580 + L1Md_A LINE L1 6386 6581 -1 2 838 410 280 166 45 chr9 33185592 33185693 -90890479 + L1MCa LINE L1 5380 5498 -823 2 838 189 0 0 0 chr9 33185763 33185784 -90890388 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 2 838 483 323 19 6 chr9 33185791 33185950 -90890222 - RSINE1 SINE B4 -3 162 2 2 838 1842 68 0 12 chr9 33186371 33186624 -90889548 + L1Md_F2 LINE L1 6333 6582 0 2 838 526 219 335 6 chr9 33187155 33187316 -90888856 + B3 SINE B2 2 215 -1 3 838 22 0 0 0 chr9 33188108 33188130 -90888042 + AT_rich Low_complexity Low_complexity 1 22 0 3 838 311 310 10 0 chr9 33189263 33189363 -90886809 - MTEb LTR MaLR 0 379 279 3 838 277 209 195 4 chr9 33192317 33192433 -90883739 + L1MA6 LINE L1 6167 6296 -1 3 838 409 349 74 16 chr9 33192863 33193119 -90883053 - Tigger15a DNA TcMar -104 611 341 3 838 252 0 0 0 chr9 33193126 33193154 -90883018 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 838 187 304 36 73 chr9 33193338 33193448 -90882724 - MIRb SINE MIR -44 224 119 3 838 1575 30 60 0 chr9 33194927 33195126 -90881046 + L1Md_F2 LINE L1 5375 5585 -298 3 838 7737 60 3 6 chr9 33195127 33196114 -90880058 + L1Md_F2 LINE L1 5587 6570 -12 3 838 313 246 12 35 chr9 33196178 33196351 -90879821 + (TATG)n Simple_repeat Simple_repeat 3 171 0 3 838 741 121 0 47 chr9 33196421 33196569 -90879603 - L1Md_F3 LINE L1 -1 6583 6443 3 838 261 0 0 0 chr9 33197015 33197044 -90879128 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 838 456 19 0 0 chr9 33197044 33197096 -90879076 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 838 342 0 0 0 chr9 33197809 33197847 -90878325 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 838 272 244 23 11 chr9 33198043 33198130 -90878042 + L1MB1 LINE L1 6061 6148 -20 3 838 1342 170 5 0 chr9 33198891 33199115 -90877057 + URR1B DNA MER1_type 1 225 0 3 838 5594 84 2 63 chr9 33199261 33200865 -90875307 + L1Md_F LINE L1 484 1985 -3898 3 838 33739 46 0 4 chr9 33200872 33206154 -90870018 + L1Md_T LINE L1 228 5588 -298 3 838 8463 34 0 0 chr9 33206155 33207151 -90869021 + L1Md_T LINE L1 5590 6585 0 3 838 28824 32 0 0 chr9 33207204 33210840 -90865332 + L1Md_A LINE L1 1952 5586 -297 3 838 8526 29 0 0 chr9 33210840 33211835 -90864337 + L1Md_A LINE L1 5587 6581 -1 3 838 280 294 26 68 chr9 33212106 33212223 -90863949 - MIRc SINE MIR 0 268 157 3 838 25 0 0 0 chr9 33212738 33212763 -90863409 + AT_rich Low_complexity Low_complexity 1 25 0 3 838 241 163 0 0 chr9 33213046 33213095 -90863077 + T-rich Low_complexity Low_complexity 1 49 0 3 838 282 56 0 0 chr9 33213097 33213133 -90863039 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 838 1352 287 63 27 chr9 33213456 33213900 -90862272 - MT2A LTR ERVL -69 464 5 3 838 596 337 68 44 chr9 33214475 33214770 -90861402 + ORR1E LTR MaLR 18 319 -40 3 838 927 280 176 22 chr9 33215115 33215524 -90860648 + Tigger15a DNA TcMar 229 700 -15 3 838 932 206 57 52 chr9 33215973 33216183 -90859989 - ORR1C2 LTR MaLR 0 384 174 3 838 1161 114 5 0 chr9 33216183 33216394 -90859778 + (GA)n Simple_repeat Simple_repeat 1 212 0 3 838 1004 146 0 6 chr9 33216395 33216482 -90859690 + polypurine Low_complexity Low_complexity 2 88 0 3 838 1305 83 0 0 chr9 33216482 33216662 -90859510 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 838 1004 146 0 6 chr9 33216662 33216753 -90859419 + polypurine Low_complexity Low_complexity 89 179 0 3 838 859 168 5 118 chr9 33216753 33216956 -90859216 - ORR1C2 LTR MaLR -198 180 1 3 838 231 36 0 0 chr9 33217395 33217423 -90858749 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 3 838 855 222 52 137 chr9 33217869 33218140 -90858032 - RMER20B LTR ERVK -3 624 377 3 838 1755 228 11 54 chr9 33218113 33218554 -90857618 - RMER20B LTR ERVK -196 431 10 3 838 5346 213 40 44 chr9 33218554 33219965 -90856207 + Lx7 LINE L1 6291 7696 0 3 838 250 275 0 133 chr9 33220890 33220995 -90855177 + MTEa LTR MaLR 1 91 -288 3 838 2025 224 112 32 chr9 33221726 33222280 -90853892 - RMER19B LTR ERVK 0 902 305 3 838 245 340 10 30 chr9 33222474 33222574 -90853598 + LTR16D LTR ERVL 460 557 -94 3 838 375 307 118 70 chr9 33222761 33223031 -90853141 - L2 LINE L2 -355 3064 2782 3 838 484 293 25 68 chr9 33223349 33223510 -90852662 + RSINE1 SINE B4 11 164 -1 3 838 408 55 0 0 chr9 33223770 33223825 -90852347 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 838 768 57 0 0 chr9 33224613 33224719 -90851453 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 838 21 0 0 0 chr9 33225469 33225490 -90850682 + AT_rich Low_complexity Low_complexity 1 21 0 3 838 300 268 20 20 chr9 33225607 33225706 -90850466 + GA-rich Low_complexity Low_complexity 3 101 0 3 838 2098 108 9 0 chr9 33226222 33226538 -90849634 - Lx2 LINE L1 0 6997 6679 3 838 317 282 47 0 chr9 33227582 33227667 -90848505 + B1_Mur2 SINE Alu 5 93 -56 3 838 519 275 93 23 chr9 33228281 33228497 -90847675 - MIRb SINE MIR 0 268 38 3 838 21 36 0 0 chr9 33228867 33228895 -90847277 + AT_rich Low_complexity Low_complexity 1 28 0 3 838 525 162 0 0 chr9 33230600 33230711 -90845461 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 3 838 256 262 219 16 chr9 33231164 33231292 -90844880 + MIRc SINE MIR 113 266 -2 3 838 332 300 58 128 chr9 33231869 33231929 -90844243 + ID_B1 SINE B4 65 224 0 3 838 387 259 134 0 chr9 33231929 33232041 -90844131 + B1F SINE Alu 23 149 0 3 838 25 0 0 0 chr9 33233100 33233125 -90843047 + AT_rich Low_complexity Low_complexity 1 25 0 3 838 316 272 136 0 chr9 33234015 33234096 -90842076 + RSINE1 SINE B4 2 93 -72 3 838 183 80 0 0 chr9 33234096 33234121 -90842051 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 3 838 221 326 0 0 chr9 33234129 33234178 -90841994 + RSINE1 SINE B4 95 143 -22 3 838 22 35 0 0 chr9 33234207 33234236 -90841936 + AT_rich Low_complexity Low_complexity 1 29 0 3 838 585 0 0 0 chr9 33235999 33236064 -90840108 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 838 369 109 0 0 chr9 33236152 33236207 -90839965 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 838 323 322 49 41 chr9 33237143 33237266 -90838906 - MTEa LTR MaLR -251 128 5 3 838 516 324 14 0 chr9 33237317 33237465 -90838707 + RSINE1 SINE B4 3 152 -13 3 838 192 40 0 0 chr9 33237494 33237519 -90838653 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 3 838 1357 190 323 9 chr9 33238224 33238691 -90837481 + RMER6C LTR ERVK 1 614 -76 3 838 5405 60 4 7 chr9 33238691 33239434 -90836738 + L1_Mm LINE L1 4837 5577 -306 3 838 7255 88 0 18 chr9 33239444 33240456 -90835716 + L1Md_F2 LINE L1 5588 6581 -1 3 838 263 241 0 0 chr9 33240456 33240510 -90835662 + RMER6C LTR ERVK 622 675 -15 3 838 442 280 80 95 chr9 33240555 33241146 -90835026 + L1MB7 LINE L1 4402 4983 -1163 3 838 3315 41 5 0 chr9 33241159 33241553 -90834619 - MTA_Mm LTR MaLR 0 396 1 3 838 573 342 72 16 chr9 33241762 33242333 -90833839 + L1MB7 LINE L1 5265 5867 -317 3 838 1290 291 54 24 chr9 33242336 33242709 -90833463 - MTD LTR MaLR -1 418 35 3 838 193 75 0 48 chr9 33242729 33242771 -90833401 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 3 838 443 226 113 0 chr9 33242778 33242884 -90833288 - MTC-int LTR MaLR -170 1088 971 3 838 401 289 61 161 chr9 33242893 33243173 -90832999 - MTC-int LTR MaLR -959 299 48 3 838 1334 264 47 50 chr9 33243198 33243581 -90832591 - MTD LTR MaLR 0 419 38 3 838 543 16 0 0 chr9 33243768 33243832 -90832340 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 838 2298 162 151 21 chr9 33247080 33247171 -90829001 - RLTR20A LTR ERVK 0 541 441 3 838 378 0 0 0 chr9 33247171 33247213 -90828959 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 838 2298 162 151 21 chr9 33247213 33247434 -90828738 - RLTR20A LTR ERVK -101 440 169 3 838 744 61 0 0 chr9 33247434 33247532 -90828640 + (TC)n Simple_repeat Simple_repeat 2 99 0 3 838 2298 162 151 21 chr9 33247532 33247696 -90828476 - RLTR20A LTR ERVK -373 168 4 3 838 225 0 0 0 chr9 33248749 33248774 -90827398 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 838 360 0 0 0 chr9 33248774 33248813 -90827359 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 838 982 143 50 0 chr9 33248813 33248974 -90827198 + ORR1A2 LTR MaLR 159 327 0 3 838 684 67 0 0 chr9 33249362 33249452 -90826720 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 838 235 315 0 22 chr9 33249997 33250088 -90826084 - MIRc SINE MIR -4 264 176 3 838 450 0 0 0 chr9 33250931 33250981 -90825191 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 3 838 405 328 81 12 chr9 33251654 33251827 -90824345 - MER5A DNA MER1_type -3 186 2 3 838 249 340 32 0 chr9 33252976 33253070 -90823102 + MER5A DNA MER1_type 1 97 -92 3 838 371 21 21 0 chr9 33253136 33253184 -90822988 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 838 22 0 0 0 chr9 33253184 33253206 -90822966 + GC_rich Low_complexity Low_complexity 1 22 0 3 838 825 136 11 28 chr9 33253335 33253516 -90822656 + G-rich Low_complexity Low_complexity 3 180 0 3 838 209 327 73 46 chr9 33254187 33254296 -90821876 + L2b LINE L2 3264 3375 0 3 838 211 246 0 47 chr9 33254688 33254752 -90821420 + G-rich Low_complexity Low_complexity 4 64 0 3 838 300 175 0 0 chr9 33255049 33255112 -90821060 + CT-rich Low_complexity Low_complexity 5 67 0 3 838 1438 219 31 79 chr9 33255569 33255960 -90820212 - ORR1D1 LTR MaLR -2 372 1 3 838 679 276 5 16 chr9 33257214 33257236 -90818936 - B3A SINE B2 -15 183 162 3 838 897 10 0 0 chr9 33257236 33257338 -90818834 + (GA)n Simple_repeat Simple_repeat 1 102 0 3 838 679 276 5 16 chr9 33257338 33257499 -90818673 - B3A SINE B2 -37 161 2 3 838 422 314 0 16 chr9 33257695 33257818 -90818354 + B4A SINE B4 150 270 -22 3 838 394 268 93 14 chr9 33257882 33258022 -90818150 + MER5A1 DNA MER1_type 1 151 -15 3 838 236 200 0 0 chr9 33258032 33258082 -90818090 - HAL1 LINE L1 -917 1590 1541 3 838 1109 68 0 7 chr9 33258147 33258296 -90817876 - B1_Mus1 SINE Alu 0 148 1 3 838 1049 299 47 11 chr9 33258703 33259068 -90817104 + MTE2b LTR MaLR 2 379 0 3 838 528 296 51 23 chr9 33259316 33259492 -90816680 + RLTR18B LTR ERVK 10 190 -322 3 838 520 278 117 117 chr9 33259653 33259995 -90816177 + RLTR18B LTR ERVK 275 616 0 3 838 532 309 109 41 chr9 33260607 33260945 -90815227 - RLTR9A LTR ERVK 0 368 8 3 838 613 359 57 23 chr9 33262210 33262595 -90813577 + HAL1 LINE L1 785 1182 -1325 3 838 423 361 10 10 chr9 33262821 33263014 -90813158 - B3A SINE B2 -2 196 4 3 838 703 258 79 100 chr9 33263041 33263321 -90812851 + MTE2a LTR MaLR 97 370 -9 3 838 312 70 0 0 chr9 33263397 33263440 -90812732 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 838 697 325 14 28 chr9 33263619 33263907 -90812265 - B4A SINE B4 -6 286 3 4 838 285 281 56 46 chr9 33264339 33264447 -90811725 + PB1D10 SINE Alu 3 111 -6 4 838 837 209 67 43 chr9 33264580 33264790 -90811382 - B3 SINE B2 0 216 2 4 838 204 83 0 53 chr9 33265694 33265732 -90810440 + (TAAAAA)n Simple_repeat Simple_repeat 6 41 0 4 838 324 271 60 11 chr9 33266555 33266665 -90809507 - B1F1 SINE Alu -2 125 2 4 838 247 373 39 28 chr9 33267232 33267414 -90808758 + ORR1D2 LTR MaLR 1 184 -186 4 838 180 77 0 0 chr9 33267946 33267972 -90808200 + (GGA)n Simple_repeat Simple_repeat 2 27 0 4 838 529 333 17 12 chr9 33268328 33268568 -90807604 - Lx8 LINE L1 -232 7241 7001 4 838 443 18 18 0 chr9 33268918 33268974 -90807198 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 838 334 312 161 46 chr9 33268982 33269439 -90806733 - L1MCa LINE L1 -1144 5177 4668 4 838 576 226 109 35 chr9 33269519 33269776 -90806396 - L1MCa LINE L1 -2725 3596 3321 4 838 1092 292 81 42 chr9 33269968 33270519 -90805653 + Lx6 LINE L1 6506 7459 -1 4 838 1297 296 41 16 chr9 33270522 33271151 -90805021 - L1MCa LINE L1 -3110 3211 2567 4 838 612 292 58 6 chr9 33271386 33271558 -90804614 - B3A SINE B2 -12 186 6 4 838 313 287 53 128 chr9 33271588 33271892 -90804280 - L1MCa LINE L1 -4398 2110 1830 4 838 805 290 5 0 chr9 33271897 33272097 -90804075 + B3 SINE B2 2 202 -14 4 838 231 194 32 0 chr9 33272098 33272160 -90804012 + (TTTAA)n Simple_repeat Simple_repeat 1 64 0 4 838 305 290 55 0 chr9 33272185 33272368 -90803804 - L1MCa LINE L1 -4665 1843 1651 4 838 22 0 0 0 chr9 33272390 33272412 -90803760 + AT_rich Low_complexity Low_complexity 1 22 0 4 838 1613 307 121 26 chr9 33272683 33273780 -90802392 - L1MCa LINE L1 -5162 1346 146 4 838 572 162 91 0 chr9 33274110 33274209 -90801963 + PB1D9 SINE Alu 1 108 -12 4 838 420 55 0 0 chr9 33274209 33274264 -90801908 + (TAA)n Simple_repeat Simple_repeat 2 56 0 4 838 288 303 0 22 chr9 33274444 33274535 -90801637 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 4 838 1348 276 49 17 chr9 33274536 33274882 -90801290 + MTE2b LTR MaLR 8 364 -15 4 838 339 329 147 6 chr9 33275587 33275743 -90800429 + MIR SINE MIR 22 199 -63 4 838 192 312 137 50 chr9 33276487 33276706 -90799466 - L2c LINE L2 -17 3370 3133 4 838 286 191 99 22 chr9 33277109 33277200 -90798972 - L1MA5A LINE L1 -356 5941 5844 4 838 1106 255 159 8 chr9 33277311 33277393 -90798779 + MTD LTR MaLR 1 94 -325 4 838 423 0 0 0 chr9 33277393 33277440 -90798732 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 838 306 87 0 0 chr9 33277444 33277490 -90798682 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 838 1106 255 159 8 chr9 33277490 33277766 -90798406 + MTD LTR MaLR 95 414 -5 4 838 355 349 39 8 chr9 33277771 33278025 -90798147 - L1MA5A LINE L1 -552 5745 5484 4 838 320 287 148 0 chr9 33278050 33278158 -90798014 + RSINE1 SINE B4 3 126 -39 4 838 286 303 0 0 chr9 33278184 33278250 -90797922 + RSINE1 SINE B4 78 143 -22 4 838 414 0 0 0 chr9 33278255 33278301 -90797871 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 838 593 294 94 52 chr9 33278622 33278855 -90797317 + B4A SINE B4 50 292 0 4 838 362 336 9 0 chr9 33281895 33282011 -90794161 + ID_B1 SINE B4 94 210 -14 4 838 201 324 112 28 chr9 33282269 33282412 -90793760 + MIRb SINE MIR 78 232 -36 4 838 193 235 78 0 chr9 33282727 33282778 -90793394 - MIR SINE MIR -47 215 161 4 838 427 216 0 17 chr9 33282963 33283081 -90793091 + CT-rich Low_complexity Low_complexity 3 118 0 4 838 813 73 0 0 chr9 33283487 33283596 -90792576 + (TA)n Simple_repeat Simple_repeat 1 109 0 4 838 352 279 64 19 chr9 33283783 33283940 -90792232 + MTD LTR MaLR 201 364 -55 4 838 513 220 51 102 chr9 33283951 33284128 -90792044 + B3 SINE B2 28 195 -21 4 838 324 0 0 0 chr9 33284566 33284602 -90791570 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 838 215 333 39 0 chr9 33284643 33284721 -90791451 - MIRb SINE MIR -132 136 56 4 838 611 48 12 0 chr9 33287519 33287602 -90788570 + (TC)n Simple_repeat Simple_repeat 2 85 0 4 838 249 342 12 37 chr9 33287916 33287998 -90788174 + ID4_ SINE ID 2 81 -2 4 838 376 293 118 32 chr9 33288300 33288487 -90787685 - MLT1A1 LTR MaLR -202 206 4 4 838 535 192 12 25 chr9 33288881 33289041 -90787131 + GA-rich Low_complexity Low_complexity 3 160 0 4 838 317 212 45 0 chr9 33289343 33289409 -90786763 + B3A SINE B2 6 74 -124 4 838 1350 241 79 16 chr9 33289420 33289736 -90786436 + MTD LTR MaLR 18 353 -66 4 838 1089 84 0 18 chr9 33289736 33289906 -90786266 + (TTC)n Simple_repeat Simple_repeat 1 167 0 4 838 200 176 0 0 chr9 33291446 33291480 -90784692 + GA-rich Low_complexity Low_complexity 3 36 0 4 838 201 139 0 0 chr9 33291698 33291705 -90784467 + (A)n Simple_repeat Simple_repeat 1 7 0 4 838 1073 96 0 0 chr9 33291705 33291851 -90784321 + B1_Mm SINE Alu 2 147 0 4 838 201 139 0 0 chr9 33291851 33291879 -90784293 + (A)n Simple_repeat Simple_repeat 1 28 0 4 838 231 338 25 0 chr9 33291962 33292042 -90784130 + MER5A DNA MER1_type 24 105 -84 4 839 378 42 0 0 chr9 33292313 33292361 -90783811 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 839 204 405 0 25 chr9 33292889 33292970 -90783202 - MIRc SINE MIR -152 116 38 4 839 552 30 0 0 chr9 33292983 33293049 -90783123 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 839 2132 184 47 5 chr9 33293110 33293514 -90782658 - Lx4A LINE L1 0 7058 6638 4 839 8263 125 14 1 chr9 33293517 33294845 -90781327 - L1_Mur2 LINE L1 -912 4965 3621 4 839 8311 134 73 21 chr9 33294813 33297156 -90779016 - L1_Mur2 LINE L1 -3001 2876 411 4 839 286 363 11 4 chr9 33297193 33297301 -90778871 + PB1D7 SINE Alu 7 115 -5 4 839 197 293 0 0 chr9 33297344 33297385 -90778787 + L2b LINE L2 3272 3312 -63 4 839 21 0 0 0 chr9 33297761 33297782 -90778390 + AT_rich Low_complexity Low_complexity 1 21 0 4 839 508 350 69 3 chr9 33297823 33298158 -90778014 - Lx9 LINE L1 -47 7597 7241 4 839 216 264 0 36 chr9 33298707 33298762 -90777410 - MIRb SINE MIR 0 268 216 4 839 366 325 22 61 chr9 33299577 33299757 -90776415 - MTEa LTR MaLR -202 177 5 4 839 264 395 8 0 chr9 33300682 33300801 -90775371 + L2a LINE L2 3303 3422 -4 4 839 204 40 0 0 chr9 33301567 33301592 -90774580 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 839 320 326 37 7 chr9 33302591 33302727 -90773445 + Tigger5 DNA MER2_type 6 145 -2261 4 839 266 229 21 0 chr9 33302809 33302870 -90773302 + Tigger5 DNA MER2_type 2334 2396 -10 4 839 242 265 24 24 chr9 33303962 33304047 -90772125 + (CATA)n Simple_repeat Simple_repeat 4 88 0 4 839 6547 74 38 3 chr9 33305543 33306441 -90769731 - RLTR13B3 LTR ERVK 0 929 1 4 839 364 224 11 34 chr9 33307652 33307740 -90768432 - RLTR23 LTR ERV1 -31 399 314 4 839 450 0 0 0 chr9 33308476 33308526 -90767646 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 4 839 232 200 0 39 chr9 33308833 33308885 -90767287 - MER5B DNA MER1_type -6 172 123 4 839 477 279 74 16 chr9 33309027 33309186 -90766986 + MIR SINE MIR 80 257 -11 4 839 545 316 155 36 chr9 33310467 33310911 -90765261 + L1MEf LINE L1 329 825 -5677 4 839 319 333 20 0 chr9 33311003 33311105 -90765067 + MER58A DNA MER1_type 20 123 -101 4 839 595 339 87 57 chr9 33311207 33311668 -90764504 + L1MEf LINE L1 906 1385 -5024 4 839 277 289 9 71 chr9 33311669 33311781 -90764391 - MTE2a LTR MaLR 0 379 275 4 839 706 312 76 36 chr9 33312377 33312653 -90763519 + Tigger7 DNA MER2_type 227 513 -1978 4 839 332 232 106 62 chr9 33312684 33312845 -90763327 + B2_Mm2 SINE B2 28 195 0 4 839 474 265 43 6 chr9 33313120 33313283 -90762889 + L1MC4a LINE L1 7690 7858 -24 4 839 305 331 66 7 chr9 33313310 33313462 -90762710 + L1MEf LINE L1 4009 4169 -2237 4 839 432 306 104 48 chr9 33313546 33314253 -90761919 + L1MD LINE L1 4020 4778 -1368 4 839 430 340 75 18 chr9 33314392 33314724 -90761448 - L1MB5 LINE L1 -8 6166 5816 4 839 408 310 67 90 chr9 33315070 33315457 -90760715 - L1MB7 LINE L1 -99 6085 5708 4 839 7569 166 30 9 chr9 33315563 33317445 -90758727 + Lx5 LINE L1 5084 7004 -46 4 839 205 146 20 20 chr9 33317445 33317494 -90758678 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 4 839 300 285 47 31 chr9 33317512 33317639 -90758533 - L1M5 LINE L1 -3280 2866 2738 4 839 272 245 124 14 chr9 33317670 33317815 -90758357 - L1M3 LINE L1 -3679 2461 2301 4 839 568 325 61 16 chr9 33317916 33318163 -90758009 - Lx8 LINE L1 -531 6942 6685 4 839 960 321 7 0 chr9 33318194 33318474 -90757698 + Lx8 LINE L1 6963 7244 -229 4 839 425 237 28 10 chr9 33318844 33319003 -90757169 - L1PB4 LINE L1 -297 5859 5662 4 839 347 286 119 52 chr9 33319034 33319244 -90756928 - Lx8 LINE L1 -5 7468 7245 4 839 1148 139 0 22 chr9 33319404 33319588 -90756584 + B2_Mm2 SINE B2 2 181 -14 4 839 457 176 9 9 chr9 33320903 33321012 -90755160 + CT-rich Low_complexity Low_complexity 1 109 0 4 839 231 287 75 47 chr9 33321217 33321323 -90754849 - MIRb SINE MIR -67 201 93 4 839 529 286 78 61 chr9 33321581 33321875 -90754297 + MamRep605 Unknown Unknown 56 354 -522 4 839 216 0 0 0 chr9 33322398 33322422 -90753750 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 839 788 293 5 14 chr9 33322422 33322630 -90753542 - ID_B1 SINE B4 -15 209 4 4 839 384 22 0 0 chr9 33322851 33322896 -90753276 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 839 463 317 27 27 chr9 33323144 33323293 -90752879 + MER58A DNA MER1_type 51 199 -25 4 839 1418 200 75 42 chr9 33323826 33324194 -90751978 - MTD LTR MaLR 0 419 12 4 839 201 370 0 20 chr9 33324289 33324391 -90751781 - L2a LINE L2 -285 3141 3042 4 839 273 29 0 0 chr9 33324810 33324844 -90751328 + (T)n Simple_repeat Simple_repeat 1 34 0 4 839 351 332 74 104 chr9 33325008 33325344 -90750828 - L2a LINE L2 -751 2668 2343 4 839 487 266 12 48 chr9 33325400 33325566 -90750606 + MER20B DNA MER1_type 224 383 -400 4 839 183 352 68 25 chr9 33327214 33327377 -90748795 + L2a LINE L2 3220 3389 -37 4 839 321 47 0 0 chr9 33329284 33329327 -90746845 + (TTG)n Simple_repeat Simple_repeat 2 44 0 5 839 275 328 76 102 chr9 33329346 33329621 -90746551 + LTR33B LTR ERVL 224 491 -12 5 839 225 0 0 0 chr9 33329807 33329832 -90746340 + (T)n Simple_repeat Simple_repeat 1 25 0 5 839 745 236 22 33 chr9 33329995 33330179 -90745993 - B3A SINE B2 -16 182 1 5 839 207 191 0 0 chr9 33330547 33330589 -90745583 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 839 389 292 132 108 chr9 33330812 33331238 -90744934 - HAL1 LINE L1 -926 1581 1146 5 839 256 346 65 22 chr9 33331680 33331819 -90744353 - MLT1F2 LTR MaLR 0 560 416 5 839 268 390 21 29 chr9 33331926 33332066 -90744106 - MLT1F2 LTR MaLR -169 391 253 5 839 351 0 0 0 chr9 33334475 33334514 -90741658 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 839 491 17 0 0 chr9 33334516 33334575 -90741597 - B1_Mus2 SINE Alu -7 140 82 5 839 924 73 24 0 chr9 33334575 33334699 -90741473 - B1_Mus1 SINE Alu -13 135 9 5 839 339 217 67 134 chr9 33334597 33334746 -90741426 - MT2B LTR ERVL -337 264 126 5 839 492 209 29 79 chr9 33334699 33334715 -90741457 - ID_B1 SINE B4 -13 211 79 5 839 509 286 27 58 chr9 33334908 33335168 -90741004 - RLTR12B LTR ERVK 0 528 277 5 839 825 250 71 143 chr9 33335204 33335498 -90740674 - RLTR11A2 LTR ERVK -168 273 1 5 839 252 100 0 0 chr9 33335694 33335734 -90740438 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 839 604 186 35 26 chr9 33335735 33335851 -90740321 - B1_Mur4 SINE Alu 0 150 34 5 839 304 343 55 20 chr9 33335871 33336017 -90740155 + RSINE1 SINE B4 4 154 -11 5 839 459 0 0 0 chr9 33336022 33336073 -90740099 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 839 270 0 0 0 chr9 33336073 33336103 -90740069 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 839 213 121 0 0 chr9 33336105 33336138 -90740034 + (GGGAGA)n Simple_repeat Simple_repeat 3 35 0 5 839 1867 169 48 45 chr9 33336339 33336735 -90739437 + RMER10B LTR ERVL 2 398 0 5 839 731 190 92 54 chr9 33337058 33337297 -90738875 + RMER17C LTR ERVK 183 430 -528 5 839 928 216 31 12 chr9 33337275 33337599 -90738573 + RMER17C LTR ERVK 81 410 0 5 839 328 243 78 0 chr9 33338435 33338538 -90737634 + L1MA7 LINE L1 6178 6288 -3 5 839 555 282 100 70 chr9 33338923 33339152 -90737020 - ORR1E LTR MaLR -123 236 1 5 839 204 67 0 0 chr9 33339724 33339754 -90736418 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 839 224 230 0 51 chr9 33339762 33339840 -90736332 + (TCTCTG)n Simple_repeat Simple_repeat 4 77 0 5 839 1100 86 6 1 chr9 33341389 33341545 -90734627 - L1Md_F2 LINE L1 -459 6123 5982 5 839 2782 80 28 5 chr9 33341545 33341933 -90734239 + L1Md_F2 LINE L1 6183 6579 -3 5 839 184 149 102 41 chr9 33342356 33342405 -90733767 + L3 LINE CR1 2266 2317 -2172 5 839 256 313 26 36 chr9 33342524 33342683 -90733489 + MIR3 SINE MIR 9 160 -48 5 839 1390 279 66 31 chr9 33343489 33344221 -90731951 + L1MC1 LINE L1 4160 4916 -1230 5 839 233 309 32 11 chr9 33344222 33344317 -90731855 + B1F SINE Alu 52 148 -1 5 839 231 302 34 34 chr9 33344432 33344521 -90731651 + Lx8 LINE L1 7081 7169 -304 5 839 365 224 59 7 chr9 33344869 33345004 -90731168 + L1MC1 LINE L1 4903 5044 -1102 5 839 1084 302 86 52 chr9 33345278 33346224 -90729948 + L1MC1 LINE L1 5257 6234 -99 5 839 306 172 0 0 chr9 33346809 33346873 -90729299 + Lx6 LINE L1 7367 7430 -30 5 839 219 36 0 0 chr9 33347081 33347109 -90729063 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 5 839 343 201 25 83 chr9 33347109 33347266 -90728906 - Lx7 LINE L1 -177 7519 7372 5 839 467 294 51 71 chr9 33347648 33348017 -90728155 - RLTR16 LTR ERVK -265 427 34 5 839 748 360 8 13 chr9 33348250 33348489 -90727683 + B4A SINE B4 49 286 -6 5 839 450 0 0 0 chr9 33348510 33348560 -90727612 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 839 414 321 74 38 chr9 33348674 33349335 -90726837 + L1M4 LINE L1 5127 5816 -363 5 839 1570 205 66 73 chr9 33349761 33350183 -90725989 - MTC LTR MaLR 0 421 3 5 839 451 311 30 86 chr9 33351580 33351777 -90724395 + B4A SINE B4 3 188 -104 5 839 214 250 0 0 chr9 33352335 33352375 -90723797 + B1F1 SINE Alu 25 64 -85 5 839 282 29 0 0 chr9 33352426 33352461 -90723711 + (CATA)n Simple_repeat Simple_repeat 3 37 0 5 839 1152 75 0 0 chr9 33354409 33354556 -90721616 - B1_Mm SINE Alu 0 147 1 5 839 401 318 12 78 chr9 33355346 33355513 -90720659 + LTR84b LTR ERVL 40 195 -566 5 839 373 338 45 70 chr9 33355782 33356024 -90720148 - ORR1E LTR MaLR -102 257 22 5 839 591 165 0 0 chr9 33356172 33356281 -90719891 + CT-rich Low_complexity Low_complexity 2 110 0 5 839 278 264 89 8 chr9 33356441 33356576 -90719596 - MER57D LTR ERV1 -252 150 1 5 839 766 73 36 0 chr9 33358818 33358928 -90717244 - L1_Mus2 LINE L1 0 6566 6453 5 839 180 0 0 0 chr9 33358937 33358957 -90717215 + (T)n Simple_repeat Simple_repeat 1 20 0 5 839 217 159 0 22 chr9 33359472 33359517 -90716655 + T-rich Low_complexity Low_complexity 2 45 0 5 839 252 267 30 0 chr9 33359744 33359845 -90716327 + L1MC4 LINE L1 6992 7095 -947 5 839 433 341 53 45 chr9 33359918 33360557 -90715615 + L1MC4 LINE L1 7327 7970 -72 5 839 5111 39 7 2 chr9 33360587 33361201 -90714971 - L1Md_F2 LINE L1 -12 6570 5954 5 839 454 292 35 0 chr9 33361240 33361353 -90714819 - Tigger7 DNA MER2_type -1 2490 2374 5 839 733 277 40 9 chr9 33361347 33361569 -90714603 + ORR1C2 LTR MaLR 156 384 0 5 839 274 209 216 0 chr9 33361858 33362011 -90714161 - L1MA7 LINE L1 -13 6278 6093 5 839 269 146 0 0 chr9 33362053 33362094 -90714078 - 5S rRNA rRNA -79 42 2 5 839 499 257 27 34 chr9 33362175 33362324 -90713848 - L1MA7 LINE L1 -524 5767 5620 5 839 874 276 97 19 chr9 33362434 33362796 -90713376 + RMER5 LTR ERV1 145 534 0 5 839 1174 214 56 29 chr9 33362874 33363267 -90712905 + L1M3 LINE L1 5207 5616 -675 5 839 180 227 22 22 chr9 33363396 33363441 -90712731 - L3 LINE CR1 -2476 2013 1969 5 839 4387 119 55 6 chr9 33363834 33364512 -90711660 + Lx LINE L1 5937 6647 -7 5 839 425 276 0 8 chr9 33364642 33364759 -90711413 + PB1D7 SINE Alu 5 120 0 5 839 277 242 11 38 chr9 33364891 33364988 -90711184 + PB1D10 SINE Alu 37 127 0 5 839 265 328 73 57 chr9 33365149 33365272 -90710900 + MER82 DNA MER2_type 1 125 -528 5 839 991 152 6 8 chr9 33365391 33365728 -90710444 + CT-rich Low_complexity Low_complexity 1 336 0 5 839 414 294 29 105 chr9 33366703 33366874 -90709298 + MER82 DNA MER2_type 200 357 -296 5 839 254 267 204 36 chr9 33367395 33367562 -90708610 + RMER15 LTR ERVL 364 558 -17 5 839 250 298 33 8 chr9 33367989 33368111 -90708061 + L1MA6 LINE L1 6061 6185 -115 5 839 1673 274 13 24 chr9 33368632 33369196 -90706976 - Lx6 LINE L1 -26 7434 6497 5 839 1470 179 7 4 chr9 33369199 33369479 -90706693 + L1_Mur2 LINE L1 4922 5202 -675 5 839 256 175 32 0 chr9 33369512 33369575 -90706597 + G-rich Low_complexity Low_complexity 6 70 0 5 839 874 157 6 6 chr9 33369568 33369747 -90706425 + GA-rich Low_complexity Low_complexity 1 179 0 5 839 204 40 0 0 chr9 33369759 33369784 -90706388 + (AGGGGG)n Simple_repeat Simple_repeat 3 27 0 5 839 563 280 116 22 chr9 33370590 33370901 -90705271 + L1MB3 LINE L1 5835 6174 -9 5 839 485 354 71 49 chr9 33371522 33371932 -90704240 + L1ME3B LINE L1 5645 6063 -177 5 839 460 283 0 0 chr9 33371972 33372071 -90704101 + PB1D10 SINE Alu 3 101 -16 5 839 363 206 29 14 chr9 33372104 33372173 -90703999 + ID4_ SINE ID 3 72 -11 5 839 598 333 42 84 chr9 33372202 33372487 -90703685 + B4A SINE B4 2 274 -18 5 839 574 309 31 6 chr9 33373095 33373258 -90702914 - ID_B1 SINE B4 -57 167 1 5 839 321 261 0 0 chr9 33373840 33373955 -90702217 + (CATA)n Simple_repeat Simple_repeat 2 116 0 5 839 455 356 62 33 chr9 33376556 33376797 -90699375 + B4A SINE B4 44 291 -1 5 839 2769 86 178 4 chr9 33376968 33377424 -90698748 - L1Md_F2 LINE L1 0 6582 6048 5 839 200 98 0 68 chr9 33377690 33377734 -90698438 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 5 839 189 107 0 0 chr9 33377739 33377767 -90698405 + (TGG)n Simple_repeat Simple_repeat 1 28 0 5 839 452 310 65 60 chr9 33377785 33377984 -90698188 + MTEb LTR MaLR 93 292 -87 5 839 233 232 0 51 chr9 33377991 33378050 -90698122 + RMER15 LTR ERVL 11 66 -509 5 839 837 292 15 30 chr9 33378165 33378430 -90697742 + RMER15 LTR ERVL 274 534 -41 5 839 291 261 0 0 chr9 33378471 33378540 -90697632 + MTEb LTR MaLR 311 379 0 5 839 684 83 0 0 chr9 33378971 33379080 -90697092 + (TCTCTG)n Simple_repeat Simple_repeat 6 114 0 5 839 234 0 0 0 chr9 33379080 33379106 -90697066 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 839 2037 247 107 19 chr9 33379109 33379202 -90696970 - RMER1C Other Other -24 1318 1195 5 839 1091 107 6 0 chr9 33379202 33379371 -90696801 + (GAA)n Simple_repeat Simple_repeat 2 171 0 5 839 2037 247 107 19 chr9 33379371 33379896 -90696276 - RMER1C Other Other -148 1194 647 5 839 4476 36 6 0 chr9 33379911 33380441 -90695731 - L1Md_A LINE L1 -1 6581 6049 5 839 570 286 47 20 chr9 33380460 33380610 -90695562 - B3 SINE B2 -60 156 3 5 839 312 48 0 0 chr9 33380717 33380759 -90695413 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 839 321 269 150 72 chr9 33381102 33381282 -90694890 - L1MEd LINE L1 -2377 3769 3576 5 839 21 0 0 0 chr9 33381801 33381822 -90694350 + AT_rich Low_complexity Low_complexity 1 21 0 5 839 228 279 16 32 chr9 33381869 33381932 -90694240 + B1_Mur4 SINE Alu 1 62 -88 5 839 389 271 47 39 chr9 33381880 33382007 -90694165 + ID_B1 SINE B4 90 217 -7 5 839 301 366 94 4 chr9 33382217 33382472 -90693700 - L1MEd LINE L1 -3565 2581 2304 5 839 33 0 0 0 chr9 33382696 33382729 -90693443 + AT_rich Low_complexity Low_complexity 1 33 0 5 839 1068 67 0 7 chr9 33382737 33382873 -90693299 - B1_Mus2 SINE Alu -12 135 1 5 839 23 33 0 0 chr9 33382874 33382904 -90693268 + AT_rich Low_complexity Low_complexity 1 30 0 5 839 21 0 0 0 chr9 33382978 33382999 -90693173 + AT_rich Low_complexity Low_complexity 1 21 0 5 839 384 260 127 18 chr9 33383363 33383557 -90692615 - L1MEd LINE L1 -4566 1600 1339 5 839 458 359 110 43 chr9 33383629 33384139 -90692033 - L1MEd LINE L1 -4871 1265 722 5 839 510 305 101 32 chr9 33385216 33385524 -90690648 + Lx8 LINE L1 7116 7444 -29 6 839 345 303 126 87 chr9 33385641 33386306 -90689866 - L2a LINE L2 0 3426 2718 6 839 1025 255 115 29 chr9 33386306 33386689 -90689483 - MTD LTR MaLR -1 418 3 6 839 345 283 113 95 chr9 33386689 33386726 -90689446 - L2a LINE L2 -702 2717 2686 6 839 599 262 71 24 chr9 33386736 33386947 -90689225 + ID_B1 SINE B4 1 221 -3 6 839 459 0 0 0 chr9 33386987 33387038 -90689134 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 839 214 303 44 22 chr9 33387635 33387666 -90688506 - B4 SINE B4 -199 93 1 6 839 254 283 0 0 chr9 33387666 33387726 -90688446 - ID4_ SINE ID -23 60 1 6 839 240 314 65 14 chr9 33387734 33387873 -90688299 - B1F SINE Alu -3 146 1 6 839 1531 278 25 25 chr9 33388124 33388570 -90687602 - Lx8 LINE L1 -543 6930 6485 6 839 479 294 50 84 chr9 33388720 33388958 -90687214 + Lx8 LINE L1 7237 7466 -7 6 839 349 333 0 0 chr9 33389125 33389215 -90686957 + B3A SINE B2 44 133 -65 6 839 23 0 0 0 chr9 33389719 33389742 -90686430 + AT_rich Low_complexity Low_complexity 1 23 0 6 839 438 267 70 39 chr9 33390086 33390242 -90685930 - RSINE1 SINE B4 -2 163 3 6 839 262 280 120 8 chr9 33390246 33390379 -90685793 + MLT1A LTR MaLR 6 153 -237 6 839 432 82 0 0 chr9 33390438 33390499 -90685673 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 6 839 568 48 24 12 chr9 33390497 33390581 -90685591 + (GAAA)n Simple_repeat Simple_repeat 1 85 0 6 839 1223 79 6 0 chr9 33390602 33390779 -90685393 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 6 839 369 255 31 30 chr9 33390779 33390919 -90685253 + MLT1A LTR MaLR 241 407 -1 6 839 723 302 49 17 chr9 33390919 33391266 -90684906 + ERVL-B4-int LTR ERVL 1 358 -5356 6 839 553 206 8 22 chr9 33391322 33391456 -90684716 - Lx4B LINE L1 0 7058 6927 6 839 725 333 82 9 chr9 33391489 33391831 -90684341 + ERVL-B4-int LTR ERVL 346 712 -5002 6 839 204 339 0 46 chr9 33392242 33392307 -90683865 - MIR SINE MIR -190 72 11 6 839 450 0 0 0 chr9 33394367 33394417 -90681755 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 6 839 405 268 42 14 chr9 33394749 33394893 -90681279 + B1F2 SINE Alu 1 148 -1 6 839 249 33 0 0 chr9 33395072 33395102 -90681070 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 839 26 0 0 0 chr9 33395259 33395285 -90680887 + AT_rich Low_complexity Low_complexity 1 26 0 6 839 2021 301 45 50 chr9 33395531 33396272 -90679900 + Lx8 LINE L1 6554 7290 -183 6 839 547 148 17 0 chr9 33396590 33396705 -90679467 + Lx LINE L1 6537 6653 -1 6 839 352 267 20 33 chr9 33396995 33397146 -90679026 + L1ME3A LINE L1 1273 1421 -4821 6 839 585 120 0 0 chr9 33397471 33397563 -90678609 + (TA)n Simple_repeat Simple_repeat 1 92 0 6 839 304 296 22 0 chr9 33397827 33397962 -90678210 + L1ME3A LINE L1 2181 2318 -3828 6 839 338 308 25 25 chr9 33398277 33398440 -90677732 + L1ME3A LINE L1 2690 2852 -3294 6 839 492 298 132 41 chr9 33398586 33399102 -90677070 + L1ME3A LINE L1 2904 3465 -2681 6 839 377 203 14 0 chr9 33399268 33399342 -90676830 + GA-rich Low_complexity Low_complexity 2 76 0 6 839 659 120 9 0 chr9 33399343 33399451 -90676721 + (GA)n Simple_repeat Simple_repeat 2 110 0 6 839 233 297 91 46 chr9 33399619 33399838 -90676334 + L1ME3A LINE L1 3687 3915 -2231 6 839 1775 169 121 8 chr9 33399935 33400299 -90675873 - Lx7 LINE L1 -485 7211 6807 6 839 283 292 0 0 chr9 33400311 33400383 -90675789 + Lx7 LINE L1 7193 7264 -432 6 839 470 287 41 14 chr9 33400388 33400607 -90675565 + RMER17C LTR ERVK 1 225 -185 6 839 201 162 0 0 chr9 33400624 33400661 -90675511 + T-rich Low_complexity Low_complexity 1 37 0 6 839 323 269 32 0 chr9 33400675 33400768 -90675404 + Lx7 LINE L1 7272 7367 -329 6 839 288 154 0 0 chr9 33400768 33400820 -90675352 + CT-rich Low_complexity Low_complexity 3 54 0 6 839 1318 191 23 82 chr9 33400872 33401225 -90674947 + Lx7 LINE L1 7365 7696 0 6 839 292 294 78 21 chr9 33401293 33401575 -90674597 + L1ME3A LINE L1 4124 4421 -1725 6 839 267 258 150 30 chr9 33401932 33402032 -90674140 + PB1D7 SINE Alu 7 118 -2 6 839 1401 275 78 0 chr9 33402258 33402640 -90673532 + MTD LTR MaLR 6 417 -2 6 839 437 351 49 14 chr9 33403113 33403544 -90672628 + L1ME3A LINE L1 5542 5987 -186 6 839 387 342 47 14 chr9 33403674 33403822 -90672350 - B3A SINE B2 -44 154 2 6 839 427 257 17 17 chr9 33403829 33403944 -90672228 - PB1D10 SINE Alu -2 115 1 6 839 229 228 42 144 chr9 33403944 33403979 -90672193 - MT2B2 LTR ERVL -427 157 135 6 839 337 341 50 11 chr9 33404213 33404492 -90671680 + L1MC3 LINE L1 5478 5767 -2018 6 839 1511 303 122 51 chr9 33404808 33406124 -90670048 + L1MC3 LINE L1 6103 7512 -273 6 839 282 29 0 0 chr9 33406161 33406196 -90669976 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 839 765 347 63 15 chr9 33406449 33406718 -90669454 + B4A SINE B4 11 292 0 6 839 2000 222 18 184 chr9 33406896 33407629 -90668543 + RMER19C LTR ERVK 1 611 0 6 839 411 21 0 0 chr9 33408045 33408093 -90668079 + (TTG)n Simple_repeat Simple_repeat 1 48 0 6 839 243 261 88 61 chr9 33408184 33408331 -90667841 - ORR1A3-int LTR MaLR -1413 550 400 6 839 201 108 0 0 chr9 33408364 33408401 -90667771 + (A)n Simple_repeat Simple_repeat 1 37 0 6 839 626 214 47 114 chr9 33408431 33408715 -90667457 - RLTR25B LTR ERVK -2 1026 621 6 839 1881 208 11 72 chr9 33409290 33409736 -90666436 - RLTR25B LTR ERVK -581 447 29 6 839 1482 212 65 41 chr9 33409742 33410111 -90666061 + ORR1C1 LTR MaLR 1 378 0 6 839 241 233 11 11 chr9 33411520 33411611 -90664561 + GA-rich Low_complexity Low_complexity 1 91 0 6 839 351 192 0 0 chr9 33411689 33411762 -90664410 + A-rich Low_complexity Low_complexity 1 73 0 6 839 237 264 93 20 chr9 33411802 33411950 -90664222 + L1_Mur1 LINE L1 1658 1827 -4059 6 839 3219 98 1 0 chr9 33412102 33412548 -90663624 - L1_Mus4 LINE L1 -380 6256 5806 6 839 299 85 21 0 chr9 33412548 33412595 -90663577 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 6 839 1162 57 0 0 chr9 33412606 33412747 -90663425 - B1_Mm SINE Alu -5 142 2 6 839 729 54 0 0 chr9 33412747 33412839 -90663333 - Lx LINE L1 -815 5839 5748 6 839 2216 114 0 0 chr9 33412839 33413156 -90663016 + L1_Mus4 LINE L1 6318 6634 -2 6 839 953 300 93 63 chr9 33413202 33413617 -90662555 + Lx8 LINE L1 2089 2527 -3353 6 839 1387 263 60 8 chr9 33413617 33414015 -90662157 - MTD LTR MaLR 0 419 1 6 839 953 300 93 63 chr9 33414015 33414265 -90661907 + Lx8 LINE L1 2528 2774 -3106 6 839 1108 299 115 31 chr9 33414270 33415063 -90661109 + Lx8 LINE L1 4224 5082 -798 6 839 454 349 15 19 chr9 33415125 33415388 -90660784 + L1M2 LINE L1 5384 5645 -655 6 839 975 308 31 26 chr9 33415455 33415854 -90660318 - MTE2a LTR MaLR -13 406 1 6 839 490 221 133 49 chr9 33415854 33416155 -90660017 + Lx8 LINE L1 5680 6047 -1597 6 839 595 250 0 0 chr9 33416258 33416378 -90659794 + B1F2 SINE Alu 29 148 -1 6 839 373 238 12 0 chr9 33416590 33416674 -90659498 + Lx8 LINE L1 6191 6275 -1198 6 839 2576 290 90 21 chr9 33416726 33417731 -90658441 + Lx8 LINE L1 6400 7473 0 6 839 36 23 0 0 chr9 33417765 33417808 -90658364 + AT_rich Low_complexity Low_complexity 1 43 0 6 839 255 279 84 15 chr9 33418032 33418163 -90658009 + Helitron1Na_Mam RC Helitron 186 325 -737 6 839 772 261 25 8 chr9 33418166 33418406 -90657766 + Helitron1Na_Mam RC Helitron 818 1061 -1 6 839 180 0 0 0 chr9 33419047 33419067 -90657105 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 839 21 36 0 0 chr9 33419211 33419239 -90656933 + AT_rich Low_complexity Low_complexity 1 28 0 6 839 329 288 0 0 chr9 33419396 33419462 -90656710 + MIRc SINE MIR 46 111 -157 6 839 483 148 0 0 chr9 33420679 33420767 -90655405 + (GGGA)n Simple_repeat Simple_repeat 2 89 0 6 839 660 26 0 0 chr9 33421671 33421749 -90654423 + (GA)n Simple_repeat Simple_repeat 1 78 0 6 839 707 266 13 4 chr9 33422260 33422490 -90653682 + L1M3 LINE L1 4557 4788 -1352 6 839 666 47 0 0 chr9 33422642 33422728 -90653444 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 839 503 340 60 24 chr9 33422873 33423171 -90653001 + Lx8 LINE L1 7134 7442 -31 6 104 4457 154 43 11 chr9 33423242 33424058 -90652114 - Lx2 LINE L1 0 6997 6156 6 840 862 339 59 18 chr9 33424072 33424411 -90651761 - MTE-int LTR MaLR -1227 353 1 6 840 254 296 37 0 chr9 33424637 33424745 -90651427 + L1M2 LINE L1 3468 3579 -2564 6 840 207 0 0 0 chr9 33424818 33424841 -90651331 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 840 2656 49 0 0 chr9 33424841 33425168 -90651004 - IAPEY3_LTR LTR ERVK 0 332 6 6 840 387 0 0 0 chr9 33425168 33425211 -90650961 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 840 717 270 10 16 chr9 33425211 33425403 -90650769 - B3 SINE B2 -25 191 1 6 840 244 203 28 28 chr9 33425477 33425548 -90650624 + (CATA)n Simple_repeat Simple_repeat 3 73 0 6 840 769 185 12 0 chr9 33425552 33425725 -90650447 + (TA)n Simple_repeat Simple_repeat 2 176 0 6 840 2663 40 3 0 chr9 33426597 33426923 -90649249 - L1Md_F2 LINE L1 0 6582 6256 6 840 218 291 18 0 chr9 33427009 33427064 -90649108 - B3A SINE B2 -125 73 18 6 840 362 322 138 61 chr9 33427099 33427410 -90648762 + MLT1J-int LTR MaLR 1053 1387 0 6 840 24 67 0 0 chr9 33429352 33429397 -90646775 + AT_rich Low_complexity Low_complexity 1 45 0 6 840 370 310 173 12 chr9 33430383 33430556 -90645616 + RMER15 LTR ERVL 337 537 -38 6 840 186 329 29 0 chr9 33430902 33430972 -90645200 - MIRb SINE MIR -182 86 15 6 840 25 0 0 0 chr9 33431300 33431325 -90644847 + AT_rich Low_complexity Low_complexity 1 25 0 6 840 255 61 0 0 chr9 33431536 33431569 -90644603 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 6 840 189 357 26 35 chr9 33431794 33431910 -90644262 - L2c LINE L2 -248 3139 3025 6 840 182 345 59 12 chr9 33432035 33432120 -90644052 + L3b LINE CR1 294 382 -100 6 840 207 0 0 0 chr9 33432387 33432410 -90643762 + (A)n Simple_repeat Simple_repeat 1 23 0 6 840 2639 300 47 47 chr9 33432676 33433688 -90642484 - Lx9 LINE L1 -174 7470 6459 6 840 609 14 0 0 chr9 33435190 33435260 -90640912 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 840 384 22 0 0 chr9 33435260 33435304 -90640868 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 840 3714 286 48 14 chr9 33435312 33436488 -90639684 + Lx9 LINE L1 6341 7555 -89 6 840 892 212 177 0 chr9 33436768 33436971 -90639201 - Lx5 LINE L1 -3 7047 6809 6 840 281 355 18 18 chr9 33438112 33438224 -90637948 + MIR3 SINE MIR 5 116 -92 6 840 22 0 0 0 chr9 33439232 33439254 -90636918 + AT_rich Low_complexity Low_complexity 1 22 0 6 840 278 339 84 0 chr9 33439333 33439461 -90636711 - B4 SINE B4 -16 276 78 6 840 254 371 31 10 chr9 33439478 33439576 -90636596 - B4 SINE B4 -191 101 2 6 840 37 23 0 0 chr9 33440408 33440452 -90635720 + AT_rich Low_complexity Low_complexity 1 44 0 6 840 340 299 40 20 chr9 33441082 33441181 -90634991 + B1F SINE Alu 10 110 -39 7 840 897 274 0 19 chr9 33441227 33441443 -90634729 - B3 SINE B2 -1 215 4 7 840 1003 92 0 0 chr9 33441600 33441731 -90634441 - B1_Mus1 SINE Alu -14 134 4 7 840 261 326 43 0 chr9 33442119 33442211 -90633961 + Lx7 LINE L1 6585 6680 -1016 7 840 267 288 95 9 chr9 33442442 33442547 -90633625 + Lx8 LINE L1 6942 7055 -418 7 840 1153 178 28 0 chr9 33442761 33442975 -90633197 - URR1B DNA MER1_type -1 224 5 7 840 277 347 52 44 chr9 33443023 33443252 -90632920 + RMER15 LTR ERVL 336 566 -9 7 840 637 12 12 0 chr9 33443292 33443376 -90632796 + L1Md_T LINE L1 6498 6582 0 7 840 23 54 0 0 chr9 33443448 33443485 -90632687 + AT_rich Low_complexity Low_complexity 1 37 0 7 840 198 0 0 0 chr9 33443709 33443731 -90632441 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 7 840 321 269 137 0 chr9 33443974 33444156 -90632016 - L1MD3 LINE L1 -110 7675 7469 7 840 475 338 85 33 chr9 33444314 33444856 -90631316 - L1MD3 LINE L1 -1294 6491 5922 7 840 967 245 180 17 chr9 33444881 33445519 -90630653 - L1MD3 LINE L1 -2153 5842 5090 7 840 488 338 62 43 chr9 33445538 33445699 -90630473 + RSINE1 SINE B4 2 165 0 7 840 2287 338 53 41 chr9 33445958 33447138 -90629034 - Lx8 LINE L1 -6 7467 6273 7 840 3925 67 0 0 chr9 33447295 33447790 -90628382 - L1Md_T LINE L1 -1 6581 6087 7 840 249 302 151 17 chr9 33447835 33448246 -90627926 - L1MD3 LINE L1 -1269 4877 4412 7 840 1553 283 141 36 chr9 33448614 33449099 -90627073 - L1MD3 LINE L1 -2545 3601 3019 7 840 309 118 0 0 chr9 33449099 33449150 -90627022 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 840 1553 283 141 36 chr9 33449150 33449995 -90626177 - L1MD3 LINE L1 -3128 3018 2133 7 840 262 181 35 24 chr9 33450299 33450384 -90625788 + T-rich Low_complexity Low_complexity 5 90 0 7 840 545 194 0 19 chr9 33450385 33450490 -90625682 - B1_Mur4 SINE Alu 0 150 48 7 840 1036 291 94 15 chr9 33450812 33451269 -90624903 + RMER5 LTR ERV1 34 526 -8 7 840 2277 69 122 11 chr9 33451591 33451942 -90624230 - RLTR10 LTR ERVK 0 390 1 7 840 1144 265 34 6 chr9 33453306 33453629 -90622543 + Lx6 LINE L1 7112 7443 -17 7 840 234 0 0 0 chr9 33453668 33453694 -90622478 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 7 840 247 208 0 0 chr9 33454251 33454304 -90621868 + A-rich Low_complexity Low_complexity 1 53 0 7 840 375 23 0 0 chr9 33454517 33454561 -90621611 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 840 306 0 0 0 chr9 33454574 33454608 -90621564 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 840 195 42 0 0 chr9 33454663 33454687 -90621485 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 840 328 161 94 47 chr9 33455058 33455143 -90621029 + RMER5 LTR ERV1 446 534 0 7 840 611 252 81 176 chr9 33455143 33455609 -90620563 - RMER10A LTR ERVL -9 433 12 7 840 2534 219 43 26 chr9 33455815 33456093 -90620079 + Lx5 LINE L1 6453 6740 -310 7 840 366 61 0 0 chr9 33456093 33456142 -90620030 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 840 2534 219 43 26 chr9 33456142 33456448 -90619724 + Lx5 LINE L1 6741 7047 -3 7 840 365 147 13 51 chr9 33456462 33456541 -90619631 - RLTR24 LTR ERV1 -10 519 444 7 840 235 344 70 0 chr9 33456554 33456740 -90619432 - L1MCb LINE L1 -5184 861 663 7 840 395 345 93 21 chr9 33457013 33457389 -90618783 - L1MCb LINE L1 -5596 449 47 7 840 332 172 0 11 chr9 33457957 33458045 -90618127 + CT-rich Low_complexity Low_complexity 1 87 0 7 840 532 164 9 9 chr9 33458075 33458186 -90617986 + GA-rich Low_complexity Low_complexity 2 112 0 7 840 436 285 11 132 chr9 33458228 33458402 -90617770 - MTEb LTR MaLR -43 336 184 7 840 1784 338 91 15 chr9 33458404 33458810 -90617362 - MTE-int LTR MaLR -567 1013 604 7 840 360 0 0 0 chr9 33458810 33458850 -90617322 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 840 1784 338 91 15 chr9 33458850 33459244 -90616928 - MTE-int LTR MaLR -977 603 153 7 840 519 283 141 75 chr9 33459404 33459752 -90616420 - MTEb LTR MaLR -1 378 8 7 840 346 442 20 48 chr9 33459766 33460018 -90616154 + L1MEf LINE L1 184 428 -5772 7 840 689 320 70 55 chr9 33460029 33460378 -90615794 + MLT1A0 LTR MaLR 3 406 -2 7 840 301 352 0 9 chr9 33460436 33460542 -90615630 + L1MEf LINE L1 426 530 -5670 7 840 715 267 113 25 chr9 33460790 33461197 -90614975 + L1MEf LINE L1 557 999 -5201 7 840 5026 80 30 4 chr9 33461250 33461943 -90614229 - L1Md_F2 LINE L1 -12 6570 5860 7 840 611 290 111 4 chr9 33462428 33462653 -90613519 - Tigger6b DNA MER2_type -1341 256 8 7 840 600 14 0 0 chr9 33462663 33462732 -90613440 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 840 1257 17 28 11 chr9 33462950 33463127 -90613045 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 840 502 385 53 32 chr9 33463171 33463641 -90612531 - L1M5 LINE L1 -1038 5108 4629 7 840 1030 172 6 39 chr9 33464994 33465175 -90610997 - RLTR21 LTR ERVK -1 1571 1397 7 840 8469 132 21 18 chr9 33465182 33466724 -90609448 - Lx2 LINE L1 -4 6993 5449 7 840 1660 157 26 7 chr9 33466723 33467025 -90609147 + Lx2 LINE L1 5129 5436 -441 7 840 437 158 0 13 chr9 33467025 33467102 -90609070 - RLTR21 LTR ERVK -161 1411 1336 7 840 3638 70 20 4 chr9 33467102 33467589 -90608583 - LTRIS2 LTR ERV1 0 564 70 7 840 7120 152 13 114 chr9 33467578 33469096 -90607076 - RLTR21 LTR ERVK -207 1365 1 7 840 420 310 124 66 chr9 33469690 33469963 -90606209 - RMER15 LTR ERVL -14 561 273 7 840 253 285 111 105 chr9 33469976 33470129 -90606043 - RMER15 LTR ERVL -421 154 1 7 840 612 318 31 7 chr9 33470629 33470944 -90605228 + MER47B DNA MER2_type 27 416 -2 7 840 305 327 88 53 chr9 33472063 33472289 -90603883 + MIRb SINE MIR 35 268 0 7 840 321 278 113 26 chr9 33473583 33473812 -90602360 - L1ME4a LINE L1 -47 6077 5829 7 840 412 366 98 31 chr9 33474289 33474675 -90601497 - L1ME4a LINE L1 -853 5293 4882 7 840 187 367 16 24 chr9 33474904 33475027 -90601145 + MIRb SINE MIR 104 225 -43 7 840 529 174 270 0 chr9 33476198 33476313 -90599859 + B1_Mus1 SINE Alu 3 148 0 7 840 205 140 20 20 chr9 33476323 33476374 -90599798 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 840 2435 205 50 42 chr9 33476637 33477238 -90598934 + Lx2B LINE L1 6389 6994 -6 7 840 257 355 32 0 chr9 33478115 33478208 -90597964 + PB1D10 SINE Alu 5 100 -17 7 840 193 261 115 42 chr9 33478302 33478398 -90597774 + MIRm SINE MIR 71 173 -103 7 840 259 318 86 122 chr9 33478413 33478692 -90597480 + ORR1E LTR MaLR 26 294 -65 7 840 225 0 0 0 chr9 33478692 33478717 -90597455 + (A)n Simple_repeat Simple_repeat 1 25 0 7 840 329 274 103 0 chr9 33479379 33479496 -90596676 - MIRb SINE MIR -8 260 132 7 840 369 0 0 0 chr9 33480102 33480143 -90596029 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 840 1041 8 0 0 chr9 33480143 33480260 -90595912 + (GA)n Simple_repeat Simple_repeat 2 119 0 7 840 532 143 27 0 chr9 33481067 33481214 -90594958 + (CAGA)n Simple_repeat Simple_repeat 2 152 0 7 840 195 310 152 42 chr9 33484630 33484748 -90591424 + L2b LINE L2 3225 3355 -20 7 840 197 379 7 43 chr9 33486159 33486297 -90589875 + L2a LINE L2 3293 3425 -1 7 840 384 22 0 0 chr9 33487840 33487885 -90588287 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 840 297 51 0 0 chr9 33487885 33487923 -90588249 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 840 289 282 72 9 chr9 33488224 33488335 -90587837 + MIR3 SINE MIR 89 206 -2 7 840 237 33 0 0 chr9 33488738 33488768 -90587404 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 7 840 234 143 71 0 chr9 33488787 33488829 -90587343 + L1M2b LINE L1 1028 1072 -6137 7 840 243 0 0 0 chr9 33490155 33490182 -90585990 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 840 694 171 8 0 chr9 33490218 33490347 -90585825 - B1_Mus2 SINE Alu -1 146 17 7 840 286 246 74 101 chr9 33490252 33490401 -90585771 - MT2B LTR ERVL -337 264 120 7 840 243 0 0 0 chr9 33490524 33490551 -90585621 + (A)n Simple_repeat Simple_repeat 1 27 0 7 840 254 350 149 48 chr9 33490731 33490980 -90585192 + RMER2 LTR ERV1 290 563 -4 7 840 414 332 43 47 chr9 33491255 33491508 -90584664 - MER2 DNA MER2_type -8 337 86 7 840 191 330 86 19 chr9 33494595 33494700 -90581472 + L2a LINE L2 3037 3148 -278 7 840 544 319 25 25 chr9 33494725 33494886 -90581286 + RSINE1 SINE B4 3 163 -2 7 840 384 59 0 0 chr9 33494892 33494943 -90581229 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 840 273 376 18 9 chr9 33494992 33495102 -90581070 + PB1D10 SINE Alu 7 117 0 7 840 204 62 62 0 chr9 33496053 33496085 -90580087 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 7 840 844 279 117 15 chr9 33497945 33498287 -90577885 + MTE2b LTR MaLR 3 379 0 7 840 993 41 0 0 chr9 33501693 33501815 -90574357 + (GA)n Simple_repeat Simple_repeat 1 122 0 1 840 23 0 0 0 chr9 33502720 33502743 -90573429 + AT_rich Low_complexity Low_complexity 1 23 0 2 840 1486 299 38 54 chr9 33502789 33503453 -90572719 + Lx8 LINE L1 6460 7112 -361 3 840 374 280 191 15 chr9 33503440 33503770 -90572402 - L1M2 LINE L1 -585 5706 5319 4 840 1198 294 110 26 chr9 33503789 33504369 -90571803 - Lx8 LINE L1 -5 7468 6840 5 840 833 234 48 31 chr9 33504405 33504634 -90571538 + Lx8 LINE L1 6582 6814 -659 6 840 341 260 7 97 chr9 33505040 33505185 -90570987 + L1M4 LINE L1 4879 5010 -1136 7 840 778 322 18 38 chr9 33505241 33505686 -90570486 + Lx6 LINE L1 44 479 -7249 8 840 393 270 18 12 chr9 33505738 33505903 -90570269 + Lx6 LINE L1 860 1025 -6703 8 840 9648 183 97 106 chr9 33505906 33506760 -90569412 + Lx6 LINE L1 1207 2067 -3813 8 840 285 75 0 0 chr9 33506760 33506800 -90569372 + (CCA)n Simple_repeat Simple_repeat 2 41 0 9 840 9648 183 97 106 chr9 33506800 33509359 -90566813 + Lx6 LINE L1 2068 4591 -1289 8 840 510 200 104 0 chr9 33509362 33509497 -90566675 - L1_Mus4 LINE L1 -5 6631 6483 1 840 3155 170 50 0 chr9 33509505 33510100 -90566072 - Lx2 LINE L1 -346 6651 6027 1 840 2210 206 2 18 chr9 33510170 33510718 -90565454 + Lx6 LINE L1 4756 5294 -586 8 840 3251 86 13 15 chr9 33510724 33511187 -90564985 + L1_Mus2 LINE L1 6091 6552 -14 1 840 2037 123 15 25 chr9 33511246 33511571 -90564601 - RMER6A LTR ERVK -434 322 1 1 840 6819 211 70 30 chr9 33511575 33513666 -90562506 + Lx6 LINE L1 5292 7445 -15 8 840 183 42 0 0 chr9 33513802 33513826 -90562346 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 840 938 285 51 34 chr9 33513831 33514388 -90561784 + L1M4 LINE L1 5197 5764 -398 7 840 367 287 53 30 chr9 33514700 33514833 -90561339 - B3 SINE B2 -3 213 78 1 840 2179 249 68 53 chr9 33514844 33515780 -90560392 + RMER1C Other Other 145 1339 -3 1 840 183 80 0 0 chr9 33516417 33516442 -90559730 + (T)n Simple_repeat Simple_repeat 1 25 0 1 840 267 343 69 7 chr9 33516784 33516928 -90559244 + MLT1A1 LTR MaLR 256 408 0 1 840 666 249 105 12 chr9 33517036 33517207 -90558965 + B3 SINE B2 5 191 -25 1 840 278 264 9 26 chr9 33517468 33517581 -90558591 - Lx2 LINE L1 -1 6996 6886 2 840 2512 231 19 10 chr9 33517567 33518237 -90557935 - L1Md_A LINE L1 -5666 1058 383 2 840 315 307 29 14 chr9 33518370 33518509 -90557663 - B1F2 SINE Alu -8 141 1 2 840 465 50 0 0 chr9 33521341 33521401 -90554771 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 840 351 0 0 0 chr9 33521401 33521439 -90554733 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 840 367 273 158 66 chr9 33522323 33522519 -90553653 + RMER2 LTR ERV1 338 551 -16 2 840 419 284 34 8 chr9 33523951 33524068 -90552104 - RSINE1 SINE B4 -2 163 44 2 840 510 17 0 0 chr9 33524458 33524517 -90551655 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 840 405 0 0 0 chr9 33524517 33524561 -90551611 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 840 22 35 0 0 chr9 33525675 33525704 -90550468 + AT_rich Low_complexity Low_complexity 1 29 0 2 840 474 314 91 6 chr9 33526052 33526358 -90549814 + ORR1E LTR MaLR 4 372 -7 3 840 843 10 0 0 chr9 33526517 33526613 -90549559 + (TC)n Simple_repeat Simple_repeat 2 97 0 3 840 225 264 122 72 chr9 33526848 33527006 -90549166 + L2a LINE L2 3239 3419 -7 3 840 342 0 0 0 chr9 33530095 33530133 -90546039 + (TAA)n Simple_repeat Simple_repeat 3 40 0 3 840 3148 129 24 12 chr9 33530272 33530768 -90545404 - Lx LINE L1 -13 6641 6140 3 840 895 124 6 6 chr9 33531125 33531303 -90544869 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 3 840 207 0 0 0 chr9 33531425 33531448 -90544724 + (A)n Simple_repeat Simple_repeat 1 23 0 3 840 581 362 113 47 chr9 33532536 33532988 -90543184 - LTR33 LTR ERVL -14 501 20 3 840 855 159 65 21 chr9 33533344 33533530 -90542642 - B2_Mm2 SINE B2 0 195 2 3 840 8469 22 1 0 chr9 33533549 33535260 -90540912 - L1Md_T LINE L1 0 6582 4871 3 840 227 196 0 18 chr9 33535742 33535799 -90540373 + (CGG)n Simple_repeat Simple_repeat 2 57 0 4 840 22 0 0 0 chr9 33537482 33537504 -90538668 + AT_rich Low_complexity Low_complexity 1 22 0 4 840 213 39 0 0 chr9 33537736 33537762 -90538410 + (A)n Simple_repeat Simple_repeat 1 26 0 4 840 2007 287 83 60 chr9 33538062 33539728 -90536444 - L1_Mur3 LINE L1 -1695 4185 2460 4 840 408 20 0 0 chr9 33539728 33539777 -90536395 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 840 2007 287 83 60 chr9 33539777 33539821 -90536351 - L1_Mur3 LINE L1 -3421 2459 2441 4 840 243 0 0 0 chr9 33539821 33539848 -90536324 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 840 2007 287 83 60 chr9 33539848 33540140 -90536032 - L1_Mur3 LINE L1 -3440 2440 2136 4 840 287 274 10 10 chr9 33540133 33540236 -90535936 + L1_Mur3 LINE L1 4259 4361 -1519 4 840 585 323 25 29 chr9 33540272 33540514 -90535658 - Lx8 LINE L1 -785 6688 6448 4 840 783 292 65 34 chr9 33540510 33540893 -90535279 + Lx8 LINE L1 7077 7471 -2 4 840 349 323 46 0 chr9 33540895 33541025 -90535147 + L1M2 LINE L1 2755 2890 -3253 4 840 910 288 31 6 chr9 33541035 33541388 -90534784 - L1M2 LINE L1 -2187 3956 3595 5 840 519 284 133 7 chr9 33541394 33541664 -90534508 + L1_Mur3 LINE L1 3918 4221 -1659 5 840 17237 76 36 1 chr9 33541696 33544751 -90531421 - MusHAL1 LINE L1 0 3353 192 5 840 745 167 8 0 chr9 33544751 33544877 -90531295 - L1VL4 LINE L1 -5983 319 193 5 840 294 272 60 24 chr9 33544864 33545030 -90531142 + L1M2 LINE L1 4231 4402 -1741 4 840 1361 199 22 149 chr9 33545156 33545605 -90530567 - ORR1B1 LTR MaLR -2 392 1 5 840 1824 163 30 123 chr9 33545694 33546100 -90530072 + ORR1B1 LTR MaLR 27 394 0 5 840 231 176 76 76 chr9 33546264 33546356 -90529816 + Lx9 LINE L1 7552 7643 -1 5 840 528 279 11 16 chr9 33546441 33546627 -90529545 + L1M2 LINE L1 4876 5060 -1083 4 840 3912 261 80 29 chr9 33546641 33547964 -90528208 + Lx9 LINE L1 6125 7526 -118 5 840 279 0 0 0 chr9 33547964 33547995 -90528177 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 840 3912 261 80 29 chr9 33547995 33548117 -90528055 + Lx9 LINE L1 7527 7644 0 5 840 323 230 77 39 chr9 33548277 33548381 -90527791 - RMER15 LTR ERVL -116 459 352 5 840 405 39 0 0 chr9 33548623 33548674 -90527498 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 840 481 146 11 0 chr9 33548749 33548838 -90527334 + L1MA4 LINE L1 5805 5894 -406 6 840 333 292 43 17 chr9 33548884 33548999 -90527173 + L1M2 LINE L1 5163 5280 -863 4 840 734 313 40 33 chr9 33549016 33549465 -90526707 + L1M2 LINE L1 5310 5761 -539 4 840 213 39 0 0 chr9 33549483 33549509 -90526663 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 840 207 176 0 0 chr9 33549830 33549864 -90526308 + (CAATA)n Simple_repeat Simple_repeat 4 37 0 6 840 23 0 0 0 chr9 33550384 33550407 -90525765 + AT_rich Low_complexity Low_complexity 1 23 0 6 840 4308 213 33 1 chr9 33551189 33552049 -90524123 - Lx5 LINE L1 0 7050 6164 6 840 2510 161 91 15 chr9 33552052 33552626 -90523546 + Lx5 LINE L1 5531 6151 -899 6 840 354 288 99 52 chr9 33553941 33554175 -90521997 + MIR SINE MIR 17 253 -15 6 841 1096 185 15 15 chr9 33554516 33554714 -90521458 - URR1A DNA MER1_type 0 226 29 6 841 3529 63 34 8 chr9 33555124 33555601 -90520571 - L1Md_F2 LINE L1 0 6582 6094 6 841 182 296 111 22 chr9 33555782 33555872 -90520300 + MER5A DNA MER1_type 52 149 -40 6 841 219 345 23 23 chr9 33556350 33556436 -90519736 - L3 LINE CR1 -5 4484 4399 7 841 7426 93 34 56 chr9 33557415 33558598 -90517574 - Lx3_Mus LINE L1 -10 6999 5843 7 841 26134 99 7 17 chr9 33558598 33560483 -90515689 - L1_Mur1 LINE L1 -526 5360 3495 7 841 227 54 27 0 chr9 33560483 33560520 -90515652 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 841 26134 113 38 20 chr9 33560520 33563475 -90512697 - L1_Mur1 LINE L1 -2392 3494 296 7 841 227 229 133 20 chr9 33563479 33563577 -90512595 - L1_Mur1 LINE L1 -6667 317 209 7 841 370 198 139 0 chr9 33563762 33563848 -90512324 + B1F SINE Alu 45 142 -7 7 841 552 336 18 46 chr9 33563858 33564139 -90512033 + B4A SINE B4 2 274 -18 7 841 701 125 8 0 chr9 33564170 33564290 -90511882 + (GA)n Simple_repeat Simple_repeat 2 122 0 7 841 198 167 0 0 chr9 33564844 33564880 -90511292 + GA-rich Low_complexity Low_complexity 3 38 0 7 841 1247 99 5 16 chr9 33565871 33566065 -90510107 + B2_Mm1t SINE B2 1 192 -1 7 841 784 273 84 32 chr9 33567469 33567829 -90508343 - MTD LTR MaLR 0 419 8 7 841 225 0 0 0 chr9 33568267 33568292 -90507880 + (T)n Simple_repeat Simple_repeat 1 25 0 8 841 204 380 43 0 chr9 33568718 33568810 -90507362 - MIR SINE MIR -92 116 21 8 841 346 94 0 0 chr9 33569960 33570013 -90506159 - L1_Mus2 LINE L1 -457 6109 6057 8 841 985 95 0 13 chr9 33570014 33570163 -90506009 + L1_Mus2 LINE L1 6420 6566 0 8 841 266 211 53 43 chr9 33571480 33571574 -90504598 - ORR1C1 LTR MaLR -283 95 1 8 841 6160 31 0 1 chr9 33572711 33573431 -90502741 + L1Md_T LINE L1 5862 6580 -2 8 841 273 89 0 0 chr9 33573654 33573699 -90502473 + (T)n Simple_repeat Simple_repeat 1 45 0 8 841 270 0 0 0 chr9 33574947 33574977 -90501195 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 8 841 24 0 0 0 chr9 33575953 33575977 -90500195 + AT_rich Low_complexity Low_complexity 1 24 0 8 841 502 404 36 59 chr9 33576828 33577220 -90498952 + LTR16A LTR ERVL 1 383 -68 8 841 243 0 0 0 chr9 33577390 33577417 -90498755 + (CAT)n Simple_repeat Simple_repeat 1 27 0 9 841 221 0 0 33 chr9 33577417 33577447 -90498725 + (TAA)n Simple_repeat Simple_repeat 2 30 0 9 841 703 253 53 11 chr9 33577462 33577650 -90498522 + B3 SINE B2 5 200 -16 9 841 326 23 23 0 chr9 33577650 33577693 -90498479 + (AATAG)n Simple_repeat Simple_repeat 5 48 0 9 841 4827 186 18 11 chr9 33578121 33579077 -90497095 + MERVL_2A-int LTR ERVL 4631 5593 -168 9 841 272 289 65 28 chr9 33579077 33579184 -90496988 + ORR1A3-int LTR MaLR 529 639 -1324 9 841 1504 212 164 72 chr9 33579238 33579726 -90496446 + MT2A LTR ERVL 1 533 0 9 841 286 364 38 8 chr9 33580269 33580402 -90495770 - MER5A DNA MER1_type -50 139 3 9 841 495 0 0 0 chr9 33580618 33580673 -90495499 + (TC)n Simple_repeat Simple_repeat 1 55 0 9 841 218 293 31 15 chr9 33582322 33582395 -90493777 - L2c LINE L2 -66 3321 3229 9 841 206 289 0 0 chr9 33582746 33582798 -90493374 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 841 649 280 0 71 chr9 33582798 33582994 -90493178 - B3A SINE B2 -16 182 1 1 841 400 274 0 0 chr9 33583046 33583130 -90493042 + B4 SINE B4 2 85 -207 1 841 675 333 15 43 chr9 33583149 33583429 -90492743 - Lx9 LINE L1 -731 6913 6642 1 841 1726 167 117 142 chr9 33583429 33584029 -90492143 - RMER4B LTR ERVK 0 585 1 1 841 675 333 15 43 chr9 33584029 33584140 -90492032 - Lx9 LINE L1 -1003 6641 6533 1 841 796 278 56 37 chr9 33584142 33584463 -90491709 + Lx9 LINE L1 6933 7259 -385 1 841 1383 166 4 13 chr9 33584465 33584697 -90491475 - ORR1A4 LTR MaLR 0 329 100 1 841 913 171 0 52 chr9 33584705 33584896 -90491276 - L1Md_F3 LINE L1 -3 6581 6401 1 841 352 377 71 8 chr9 33584971 33585238 -90490934 - L1MB8 LINE L1 -153 6025 5742 1 841 486 334 97 12 chr9 33585456 33585971 -90490201 - L1MC1 LINE L1 -102 6231 5673 1 841 277 250 72 8 chr9 33585976 33586101 -90490071 - L1MD LINE L1 -2474 5521 5389 1 841 691 257 44 75 chr9 33586560 33586947 -90489225 + L1M2 LINE L1 4281 4655 -1488 1 841 1079 231 28 47 chr9 33586989 33587307 -90488865 - L1MC1 LINE L1 -815 5331 5020 1 841 452 342 110 31 chr9 33587389 33587842 -90488330 - MLT2B3 LTR ERVL -34 486 3 1 841 2365 228 41 52 chr9 33587901 33588587 -90487585 - RMER1B Other Other -15 1051 374 1 841 354 200 96 0 chr9 33588705 33588820 -90487352 - L1MC1 LINE L1 -1235 4911 4786 1 841 191 340 35 82 chr9 33589101 33589271 -90486901 - MIRc SINE MIR -106 162 1 1 841 26 50 0 0 chr9 33590449 33590489 -90485683 + AT_rich Low_complexity Low_complexity 1 40 0 1 841 21 0 0 0 chr9 33590750 33590771 -90485401 + AT_rich Low_complexity Low_complexity 1 21 0 1 841 241 333 94 0 chr9 33591165 33591282 -90484890 + L2a LINE L2 3298 3425 -1 1 841 674 198 0 6 chr9 33591621 33591799 -90484373 + CT-rich Low_complexity Low_complexity 1 177 0 1 841 6051 122 34 22 chr9 33592538 33593594 -90482578 + Lx LINE L1 5587 6629 -25 1 841 693 0 0 0 chr9 33594395 33594472 -90481700 + (TTCTC)n Simple_repeat Simple_repeat 3 79 0 1 841 277 276 35 79 chr9 33595123 33595237 -90480935 - B1F SINE Alu -9 140 32 1 841 334 281 57 96 chr9 33595760 33595937 -90480235 + L2a LINE L2 3249 3418 -8 1 841 482 240 183 19 chr9 33597502 33597822 -90478350 + L1MA6 LINE L1 5908 6293 -7 1 841 749 95 36 0 chr9 33597925 33598062 -90478110 + (TCTA)n Simple_repeat Simple_repeat 2 143 0 1 841 614 82 0 10 chr9 33598578 33598677 -90477495 + (GA)n Simple_repeat Simple_repeat 1 98 0 1 841 305 293 122 59 chr9 33598975 33599196 -90476976 + L2a LINE L2 1889 2123 -1296 1 841 1020 295 68 37 chr9 33599203 33599555 -90476617 - ORR1D2 LTR MaLR -3 367 5 1 841 25 51 0 0 chr9 33599847 33599886 -90476286 + AT_rich Low_complexity Low_complexity 1 39 0 1 841 600 326 14 0 chr9 33599919 33600063 -90476109 - RSINE1 SINE B4 -18 147 2 1 841 188 349 118 58 chr9 33600428 33600793 -90475379 + L2a LINE L2 3040 3426 0 1 841 294 248 117 0 chr9 33601500 33601637 -90474535 - Lx9 LINE L1 -99 7545 7393 1 841 216 0 0 0 chr9 33601662 33601686 -90474486 + (A)n Simple_repeat Simple_repeat 1 24 0 1 841 2082 262 41 110 chr9 33601773 33603090 -90473082 - L1_Rod LINE L1 -2193 3654 2445 1 841 444 51 0 0 chr9 33603090 33603149 -90473023 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 841 2082 262 41 110 chr9 33603149 33603295 -90472877 - L1_Rod LINE L1 -3403 2444 2294 1 841 267 152 34 0 chr9 33603326 33603385 -90472787 - L1_Rod LINE L1 -3668 2179 2119 1 841 1413 241 226 22 chr9 33603404 33603943 -90472229 + MTD-int LTR MaLR 413 1061 -197 1 841 24 0 0 0 chr9 33603947 33603971 -90472201 + AT_rich Low_complexity Low_complexity 1 24 0 1 841 310 202 246 24 chr9 33604029 33604119 -90472053 - Lx9 LINE L1 -87 7557 7438 1 841 3114 53 5 10 chr9 33604119 33604517 -90471655 + MTA_Mm LTR MaLR 1 396 0 1 841 310 202 246 24 chr9 33604517 33604593 -90471579 - Lx9 LINE L1 -207 7437 7354 1 841 1184 147 51 14 chr9 33604598 33604812 -90471360 - URR1A DNA MER1_type 0 226 5 1 841 444 260 58 23 chr9 33604816 33604989 -90471183 + MTD-int LTR MaLR 1080 1258 0 1 841 1808 228 20 20 chr9 33605002 33605401 -90470771 + MTD LTR MaLR 13 411 -8 1 841 408 284 70 13 chr9 33605405 33605562 -90470610 - L1_Rod LINE L1 -4266 1581 1416 1 841 649 250 9 23 chr9 33605576 33605797 -90470375 - L1_Rod LINE L1 -6483 1125 908 1 841 424 0 18 18 chr9 33607066 33607123 -90469049 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 1 841 473 88 12 0 chr9 33608754 33608834 -90467338 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 1 841 204 192 13 40 chr9 33608838 33608914 -90467258 + CT-rich Low_complexity Low_complexity 6 79 0 1 841 303 230 13 13 chr9 33610450 33610525 -90465647 + GA-rich Low_complexity Low_complexity 2 76 0 1 841 239 0 32 0 chr9 33610680 33610711 -90465461 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 1 841 186 133 0 0 chr9 33611106 33611136 -90465036 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 841 264 258 0 35 chr9 33611540 33611709 -90464463 + (CATA)n Simple_repeat Simple_repeat 3 165 0 1 841 1694 21 0 0 chr9 33611722 33611915 -90464257 - B2_Mm1t SINE B2 0 193 1 1 841 1375 268 36 22 chr9 33612152 33612514 -90463658 - MTE2b LTR MaLR -12 367 1 1 841 564 116 0 0 chr9 33613148 33613234 -90462938 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 841 370 347 103 36 chr9 33613931 33614349 -90461823 - L1M5 LINE L1 -794 5352 4907 1 841 219 104 72 29 chr9 33614356 33614425 -90461747 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 841 288 0 0 0 chr9 33614636 33614668 -90461504 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 841 668 299 133 4 chr9 33617919 33618144 -90458028 + B4A SINE B4 1 254 -38 1 841 279 0 0 0 chr9 33618164 33618195 -90457977 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 841 747 200 0 8 chr9 33619113 33619244 -90456928 + B3 SINE B2 1 130 -86 1 841 326 195 0 13 chr9 33620095 33620173 -90455999 + CT-rich Low_complexity Low_complexity 3 79 0 1 841 399 364 28 11 chr9 33621226 33621509 -90454663 + L1M3d LINE L1 1086 1373 -4518 1 841 306 322 149 30 chr9 33621544 33621906 -90454266 + L1MA6 LINE L1 5770 6174 -126 1 841 2633 208 50 4 chr9 33622995 33623520 -90452652 - Lx7 LINE L1 -498 7198 6650 1 841 558 165 106 110 chr9 33623527 33623745 -90452427 + Lx9 LINE L1 7419 7635 -9 1 841 24 32 0 0 chr9 33623827 33623858 -90452314 + AT_rich Low_complexity Low_complexity 1 31 0 1 841 352 315 79 90 chr9 33623978 33624156 -90452016 + B4 SINE B4 117 292 0 1 841 651 232 0 0 chr9 33624156 33624373 -90451799 + (CA)n Simple_repeat Simple_repeat 1 217 0 1 841 997 220 54 15 chr9 33625185 33625219 -90450953 - B3 SINE B2 0 216 180 1 841 478 139 0 92 chr9 33625219 33625338 -90450834 - L1Md_F3 LINE L1 -15 6569 6462 1 841 997 220 54 15 chr9 33625338 33625506 -90450666 - B3 SINE B2 -37 179 6 1 841 180 0 0 0 chr9 33625789 33625809 -90450363 + (T)n Simple_repeat Simple_repeat 1 20 0 1 841 26 30 0 0 chr9 33626423 33626456 -90449716 + AT_rich Low_complexity Low_complexity 1 33 0 1 841 249 139 0 0 chr9 33626456 33626499 -90449673 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 841 644 274 17 6 chr9 33626505 33626685 -90449487 - B3A SINE B2 -16 182 1 1 841 411 318 92 8 chr9 33627220 33627350 -90448822 + RSINE1 SINE B4 5 145 -20 1 841 618 60 0 0 chr9 33627368 33627451 -90448721 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 841 228 163 0 0 chr9 33627470 33627513 -90448659 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1 841 499 252 32 64 chr9 33627755 33627912 -90448260 + RMER15 LTR ERVL 9 160 -415 1 841 527 326 38 5 chr9 33627999 33628184 -90447988 + RMER15 LTR ERVL 385 575 0 1 841 365 314 19 148 chr9 33630770 33630806 -90445366 - B3A SINE B2 -3 195 163 1 841 330 67 0 0 chr9 33630806 33630851 -90445321 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 841 365 314 19 148 chr9 33630851 33630950 -90445222 - B3A SINE B2 -36 162 79 1 841 1100 78 0 0 chr9 33630950 33631092 -90445080 + B1_Mm SINE Alu 1 142 -5 1 841 365 314 19 148 chr9 33631092 33631164 -90445008 - B3A SINE B2 -120 78 14 1 841 485 16 16 0 chr9 33631184 33631246 -90444926 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 841 182 204 89 36 chr9 33631301 33631357 -90444815 + L3 LINE CR1 1660 1718 -2771 1 841 212 283 0 0 chr9 33632162 33632208 -90443964 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 1 841 39 50 0 0 chr9 33632286 33632346 -90443826 + AT_rich Low_complexity Low_complexity 1 60 0 1 841 220 355 33 22 chr9 33632453 33632545 -90443627 + B4A SINE B4 1 93 -199 1 841 1546 295 46 30 chr9 33632766 33633395 -90442777 - Lx9 LINE L1 -78 7566 6928 1 841 741 244 54 39 chr9 33633412 33633714 -90442458 + L1MC1 LINE L1 5118 5431 -748 1 841 1421 271 114 60 chr9 33634116 33634946 -90441226 + L1MC1 LINE L1 5431 6300 -44 1 841 851 223 173 5 chr9 33635000 33635387 -90440785 + L1M4b LINE L1 1864 2315 -5019 1 841 1080 275 30 6 chr9 33635409 33635771 -90440401 + L1MA6 LINE L1 5575 5945 -355 1 841 432 0 0 0 chr9 33635900 33635948 -90440224 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 841 273 250 92 46 chr9 33636026 33636156 -90440016 + L1MA6 LINE L1 6143 6278 -19 1 841 3946 0 0 0 chr9 33636470 33636986 -90439186 - L1Md_A LINE L1 -560 6022 5507 1 841 4747 6 31 0 chr9 33636986 33637527 -90438645 + L1Md_A LINE L1 6025 6582 0 1 841 1175 62 0 0 chr9 33637558 33637703 -90438469 + B1_Mus1 SINE Alu 2 146 -2 1 841 288 61 46 58 chr9 33637704 33637791 -90438381 + A-rich Low_complexity Low_complexity 5 90 0 1 841 440 306 79 49 chr9 33638402 33638970 -90437202 + L1M4b LINE L1 3239 3823 -3183 1 841 565 250 21 7 chr9 33638995 33639140 -90437032 + B1_Mur1 SINE Alu 2 148 -1 1 841 231 296 99 0 chr9 33639240 33639311 -90436861 + ID SINE ID 1 78 -146 1 841 22 56 0 0 chr9 33639440 33639476 -90436696 + AT_rich Low_complexity Low_complexity 1 36 0 1 841 555 56 0 0 chr9 33639807 33639878 -90436294 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 1 841 3998 93 2 2 chr9 33640148 33640696 -90435476 + L1_Mus4 LINE L1 6082 6629 -7 1 841 22 0 0 0 chr9 33640752 33640774 -90435398 + AT_rich Low_complexity Low_complexity 1 22 0 1 841 1112 82 0 26 chr9 33640828 33640979 -90435193 + B1_Mus1 SINE Alu 2 148 0 1 841 548 223 18 0 chr9 33641020 33641132 -90435040 - Lx2B LINE L1 -367 6633 6520 1 841 955 213 79 29 chr9 33641125 33641446 -90434726 + Lx2B LINE L1 6623 7050 -8 1 841 784 310 66 25 chr9 33641476 33641794 -90434378 + Lx8 LINE L1 7009 7339 -134 1 841 325 307 26 97 chr9 33641806 33642001 -90434171 + B3A SINE B2 2 182 -16 1 841 244 292 105 58 chr9 33642161 33642247 -90433925 + L1M4b LINE L1 4665 4749 -2257 1 841 1853 159 38 0 chr9 33642247 33642562 -90433610 + ORR1A2 LTR MaLR 1 327 0 1 841 244 292 105 58 chr9 33642562 33642646 -90433526 + L1M4b LINE L1 4750 4843 -2163 1 841 377 264 165 48 chr9 33642852 33643440 -90432732 + L1M4b LINE L1 4985 5641 -1365 1 841 226 254 144 36 chr9 33643447 33643586 -90432586 + ORR1A1-int LTR MaLR 1361 1514 -278 2 841 296 284 183 13 chr9 33643586 33643903 -90432269 + L1M4b LINE L1 5786 6156 -850 1 841 412 314 26 33 chr9 33643957 33644154 -90432018 + L1M4b LINE L1 6189 6386 -652 1 841 1690 236 44 12 chr9 33644154 33644562 -90431610 + MTC LTR MaLR 1 421 0 2 841 412 310 26 32 chr9 33644562 33644604 -90431568 + L1M4b LINE L1 6387 6425 -609 1 841 339 346 64 46 chr9 33644812 33644986 -90431186 - MLT1F1 LTR MaLR -316 233 61 2 841 3621 172 61 36 chr9 33645315 33646285 -90429887 + RLTR22_Mur LTR ERVK 1 998 -810 2 841 820 204 152 13 chr9 33646435 33646659 -90429513 + RLTR22_Mur LTR ERVK 1590 1844 -4 2 841 265 254 17 0 chr9 33646923 33646982 -90429190 + GA-rich Low_complexity Low_complexity 1 60 0 2 841 306 242 33 11 chr9 33647137 33647229 -90428943 - Lx4B LINE L1 -7 7051 6958 2 841 19360 70 3 4 chr9 33647216 33649815 -90426357 + L1Md_F2 LINE L1 2989 5584 -299 2 841 7473 71 1 5 chr9 33649815 33650795 -90425377 + L1Md_F2 LINE L1 5595 6570 -12 2 841 207 0 0 0 chr9 33650798 33650821 -90425351 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 841 605 303 47 61 chr9 33650913 33651127 -90425045 + B3A SINE B2 3 213 -3 2 841 313 298 19 9 chr9 33651856 33651961 -90424211 + Cheshire DNA MER1_type 2 107 -2313 2 841 250 260 0 0 chr9 33651964 33652014 -90424158 + ID4_ SINE ID 7 56 -27 2 841 21 57 0 0 chr9 33652032 33652067 -90424105 + AT_rich Low_complexity Low_complexity 1 35 0 2 841 27 29 0 0 chr9 33652122 33652156 -90424016 + AT_rich Low_complexity Low_complexity 1 34 0 2 841 180 305 17 17 chr9 33652792 33652852 -90423320 + MIRb SINE MIR 132 191 -77 2 841 189 277 140 56 chr9 33654075 33654182 -90421990 - MIRb SINE MIR -132 136 21 2 841 29 0 0 0 chr9 33654251 33654280 -90421892 + AT_rich Low_complexity Low_complexity 1 29 0 2 841 1791 103 68 49 chr9 33654303 33654629 -90421543 - L1_Mus3 LINE L1 -7 6631 6300 2 841 263 349 70 101 chr9 33654919 33655305 -90420867 + ORR1D1 LTR MaLR 1 374 0 2 841 192 179 0 0 chr9 33656900 33656939 -90419233 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 841 378 91 0 0 chr9 33658566 33658621 -90417551 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 841 215 316 49 66 chr9 33659339 33659522 -90416650 - MIR SINE MIR -6 256 77 2 841 788 147 271 0 chr9 33659604 33659781 -90416391 - URR1B DNA MER1_type 0 225 1 2 841 276 30 0 0 chr9 33659793 33659826 -90416346 + (TAAG)n Simple_repeat Simple_repeat 1 33 0 2 841 225 366 37 0 chr9 33662904 33662986 -90413186 - MER45R DNA Tip100 -1471 110 26 2 841 227 233 16 16 chr9 33664654 33664715 -90411457 + B1_Mus2 SINE Alu 86 146 -1 2 841 432 229 197 0 chr9 33664924 33665046 -90411126 + URR1A DNA MER1_type 81 226 0 2 841 1248 86 17 0 chr9 33665291 33665465 -90410707 - B2_Mm1t SINE B2 -14 179 3 2 841 271 346 77 0 chr9 33666016 33666146 -90410026 + L2a LINE L2 3287 3426 0 2 841 232 272 56 31 chr9 33666184 33666272 -90409900 - MIRc SINE MIR -120 148 57 2 841 239 254 115 172 chr9 33667880 33668089 -90408083 - MamGypLTR1c LTR Gypsy -606 197 1 2 841 342 0 0 0 chr9 33668891 33668929 -90407243 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 841 211 175 35 0 chr9 33668939 33668996 -90407176 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 841 239 398 17 58 chr9 33669141 33669261 -90406911 + MIRc SINE MIR 11 125 -143 2 841 2925 223 85 48 chr9 33669338 33670147 -90406025 - Lx6 LINE L1 -9 7451 6613 2 841 8514 211 51 9 chr9 33670143 33671234 -90404938 - Lx6 LINE L1 -1063 6397 5246 2 841 507 51 38 0 chr9 33671234 33671313 -90404859 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 841 8514 180 37 6 chr9 33671313 33672546 -90403626 - Lx6 LINE L1 -635 5245 3977 2 841 329 347 16 0 chr9 33672547 33672671 -90403501 - MTE2a LTR MaLR -216 163 38 2 841 570 204 88 9 chr9 33673233 33673347 -90402825 - RSINE1 SINE B4 -40 125 3 2 841 377 249 103 2 chr9 33675132 33675271 -90400901 + MTE2a LTR MaLR 3 158 -221 2 841 520 277 22 77 chr9 33675255 33675440 -90400732 + B3A SINE B2 42 216 0 2 841 396 0 0 0 chr9 33675711 33675755 -90400417 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 841 261 346 88 22 chr9 33675933 33676069 -90400103 - MER45A DNA Tip100 0 178 34 2 841 273 29 0 0 chr9 33677872 33677906 -90398266 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 841 5702 31 0 0 chr9 33677964 33678631 -90397541 - L1Md_T LINE L1 0 6582 5916 2 841 3190 50 0 0 chr9 33678631 33679052 -90397120 + Lx8 LINE L1 5503 5921 -1552 2 841 696 318 58 54 chr9 33679123 33679656 -90396516 - L1MA7 LINE L1 -225 6066 5532 2 841 417 285 46 105 chr9 33680850 33681168 -90395004 + MER44A DNA MER2_type 17 325 -14 2 841 245 319 114 36 chr9 33681666 33681832 -90394340 + RMER4A LTR ERVK 8 186 -280 2 841 1133 83 7 0 chr9 33681953 33682098 -90394074 - B1_Mm SINE Alu 0 147 2 2 841 256 293 34 17 chr9 33682207 33682325 -90393847 - Lx8 LINE L1 -1572 5901 5782 2 841 308 267 29 64 chr9 33682482 33682622 -90393550 - L1P5 LINE L1 -575 5581 5447 2 841 261 255 38 0 chr9 33682645 33682751 -90393421 + L1M LINE L1 5268 5377 -914 2 841 1761 267 33 99 chr9 33682750 33683303 -90392869 + Lx7 LINE L1 6190 6718 -978 2 841 361 100 0 59 chr9 33683303 33683388 -90392784 + L1Md_F2 LINE L1 6503 6582 0 2 841 1761 267 33 99 chr9 33683388 33683502 -90392670 + Lx7 LINE L1 6719 6813 -883 2 105 14612 163 5 53 chr9 33683566 33688572 -90387600 + L1_Mus1 LINE L1 1691 6126 -441 2 842 2050 95 35 6 chr9 33688572 33688889 -90387283 + L1_Mus1 LINE L1 6307 6632 -6 2 842 752 309 119 15 chr9 33688944 33689354 -90386818 + Lx7 LINE L1 6912 7364 -332 2 842 215 95 0 87 chr9 33689376 33689422 -90386750 + T-rich Low_complexity Low_complexity 1 42 0 2 842 219 221 0 29 chr9 33689537 33689607 -90386565 + A-rich Low_complexity Low_complexity 4 71 0 2 842 182 282 36 60 chr9 33690868 33690951 -90385221 + MIR SINE MIR 86 166 -96 2 842 297 0 0 0 chr9 33691984 33692017 -90384155 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 842 222 62 0 0 chr9 33692040 33692072 -90384100 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 2 842 1073 308 62 40 chr9 33692185 33692787 -90383385 + L1MA4 LINE L1 4374 4983 -1160 2 842 339 25 0 0 chr9 33692787 33692827 -90383345 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 842 414 0 0 0 chr9 33692827 33692872 -90383300 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 842 1073 315 113 41 chr9 33692872 33693273 -90382899 + L1MA4 LINE L1 4908 5404 -443 2 842 272 273 20 10 chr9 33693333 33693433 -90382739 + L1MA4 LINE L1 5677 5777 -523 2 842 411 68 0 0 chr9 33693443 33693502 -90382670 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 842 510 70 0 0 chr9 33693502 33693573 -90382599 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 842 356 179 0 9 chr9 33693656 33693769 -90382403 + GA-rich Low_complexity Low_complexity 1 112 0 2 842 266 240 0 74 chr9 33693790 33693871 -90382301 + L1MA4 LINE L1 5848 5922 -378 2 842 330 26 0 0 chr9 33693884 33693923 -90382249 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 842 723 124 0 0 chr9 33693923 33694068 -90382104 + (GA)n Simple_repeat Simple_repeat 2 146 0 2 842 306 0 0 0 chr9 33694615 33694649 -90381523 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 842 420 37 0 0 chr9 33694649 33694702 -90381470 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 842 188 323 148 37 chr9 33695673 33695808 -90380364 + MIR3 SINE MIR 8 157 -51 2 842 271 289 115 26 chr9 33695888 33696044 -90380128 + MER20 DNA MER1_type 45 214 -5 2 842 186 43 0 0 chr9 33696129 33696152 -90380020 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 842 524 326 7 7 chr9 33696163 33696302 -90379870 - RSINE1 SINE B4 -17 148 10 2 842 212 342 72 66 chr9 33696590 33696756 -90379416 - MIRb SINE MIR -6 262 96 2 842 547 374 100 25 chr9 33697243 33697564 -90378608 - MLT1F LTR MaLR -177 371 27 2 842 322 317 16 40 chr9 33698358 33698483 -90377689 - ID_B1 SINE B4 -1 223 102 2 842 23 0 0 0 chr9 33698570 33698593 -90377579 + AT_rich Low_complexity Low_complexity 1 23 0 2 842 789 216 31 67 chr9 33700711 33700934 -90375238 + B3 SINE B2 2 216 0 2 842 222 91 0 0 chr9 33700966 33700999 -90375173 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 842 1237 278 126 28 chr9 33701484 33702057 -90374115 + Charlie1a DNA MER1_type 226 854 -601 2 842 226 268 104 26 chr9 33702387 33702502 -90373670 + Lx7 LINE L1 7206 7329 -367 2 842 225 0 0 0 chr9 33702770 33702795 -90373377 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 842 22 0 0 0 chr9 33703211 33703233 -90372939 + AT_rich Low_complexity Low_complexity 1 22 0 2 842 533 319 22 0 chr9 33703247 33703385 -90372787 + B1_Mur1 SINE Alu 8 148 -1 2 842 842 201 210 21 chr9 33703762 33704037 -90372135 + Charlie1a DNA MER1_type 867 1193 -262 2 842 183 342 181 25 chr9 33704047 33704251 -90371921 - L3 LINE CR1 -441 4048 3813 2 842 1038 62 0 8 chr9 33704962 33705091 -90371081 - B1_Mus2 SINE Alu -19 128 1 2 842 368 328 23 34 chr9 33706361 33706538 -90369634 + CT-rich Low_complexity Low_complexity 1 175 0 2 842 343 272 34 51 chr9 33707026 33707257 -90368915 - L1ME1 LINE L1 -80 6084 5861 2 842 318 271 81 8 chr9 33707434 33707557 -90368615 - L1ME1 LINE L1 -331 5848 5717 2 842 1176 151 9 22 chr9 33707926 33708150 -90368022 + URR1B DNA MER1_type 5 225 0 2 842 1376 124 23 5 chr9 33708359 33708577 -90367595 - URR1A DNA MER1_type -3 223 2 2 842 32 0 0 0 chr9 33709924 33709956 -90366216 + AT_rich Low_complexity Low_complexity 1 32 0 2 842 225 0 0 0 chr9 33711397 33711422 -90364750 + (T)n Simple_repeat Simple_repeat 1 25 0 2 842 439 322 25 8 chr9 33713244 33713479 -90362693 - L1M3 LINE L1 -877 5263 5025 2 842 906 297 77 26 chr9 33713646 33713985 -90362187 + ORR1E LTR MaLR 2 357 -2 2 842 378 268 73 0 chr9 33713994 33714117 -90362055 - L1M3 LINE L1 -1305 4835 4704 2 842 2648 208 97 11 chr9 33714127 33714831 -90361341 + Lx9 LINE L1 6879 7642 -2 2 842 36960 7 1 1 chr9 33714969 33720755 -90355417 + L1Md_A LINE L1 1 5586 -297 2 842 9001 7 0 0 chr9 33720755 33721751 -90354421 + L1Md_A LINE L1 5587 6582 0 2 842 1777 252 68 113 chr9 33721751 33722333 -90353839 + L1MA9 LINE L1 5599 6155 -157 2 842 423 38 0 0 chr9 33722364 33722417 -90353755 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 842 209 273 0 0 chr9 33723045 33723100 -90353072 - L2a LINE L2 -1 3425 3371 2 842 198 71 0 0 chr9 33724064 33724092 -90352080 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 842 920 62 23 0 chr9 33724687 33724816 -90351356 + L1Md_F2 LINE L1 6449 6580 -2 3 842 918 249 56 0 chr9 33725652 33725849 -90350323 + RMER1B Other Other 44 251 -815 3 842 1263 117 0 0 chr9 33725850 33726407 -90349765 + (CAG)n Simple_repeat Simple_repeat 1 557 0 3 842 358 231 54 21 chr9 33726415 33726508 -90349664 + RMER1B Other Other 290 385 -681 3 842 302 354 124 10 chr9 33726519 33726713 -90349459 + RMER1A Other Other 32 247 -783 3 842 2733 253 190 31 chr9 33726720 33727609 -90348563 + RMER1A Other Other 1 1030 0 3 842 600 267 152 10 chr9 33727744 33728047 -90348125 - L1MA5 LINE L1 -4 6296 5951 3 842 211 333 89 28 chr9 33729449 33729628 -90346544 + MIRb SINE MIR 24 213 -55 3 842 381 43 0 0 chr9 33729850 33729897 -90346275 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 842 313 339 150 35 chr9 33730479 33730733 -90345439 - RMER15 LTR ERVL -18 557 275 3 842 1601 201 184 33 chr9 33730807 33731172 -90345000 - MTC LTR MaLR -1 420 1 3 842 255 360 97 43 chr9 33731261 33731447 -90344725 + MLT1A LTR MaLR 1 196 -178 3 842 901 33 16 0 chr9 33731511 33731632 -90344540 + (GAA)n Simple_repeat Simple_repeat 2 124 0 3 842 305 261 11 43 chr9 33731978 33732070 -90344102 + MLT1A0 LTR MaLR 79 167 -198 3 842 6746 114 5 37 chr9 33732396 33733386 -90342786 + RMER17B LTR ERVK 1 958 0 3 842 313 307 19 108 chr9 33733944 33734101 -90342071 + MER20 DNA MER1_type 58 200 -19 3 842 1852 54 18 0 chr9 33734214 33734438 -90341734 + L1Md_F2 LINE L1 5359 5586 -297 3 842 8387 53 2 7 chr9 33734438 33735428 -90340744 + L1Md_F2 LINE L1 5587 6571 -11 3 842 704 259 59 24 chr9 33735428 33735456 -90340716 + L1MC LINE L1 5613 5646 -2236 3 842 2173 250 51 34 chr9 33735979 33736650 -90339522 + RCHARR1 DNA MER1_type 293 974 0 3 842 866 110 0 29 chr9 33736668 33736808 -90339364 - URR1A DNA MER1_type 0 226 91 3 842 335 260 31 68 chr9 33736808 33736822 -90339350 + CYRA11_Mm Unknown Y-chromosome 208 319 -298 3 842 596 277 68 98 chr9 33738198 33738494 -90337678 - MTEa LTR MaLR -42 337 51 3 842 311 400 0 103 chr9 33738506 33738729 -90337443 - RMER30 DNA MER1_type 0 202 3 3 842 320 147 43 29 chr9 33738837 33738907 -90337265 + L1MA6 LINE L1 6228 6298 -2 3 842 184 449 16 0 chr9 33739965 33740092 -90336080 - L3 LINE CR1 -156 4333 4205 3 842 450 0 0 0 chr9 33740621 33740671 -90335501 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 3 842 630 238 0 8 chr9 33740967 33741098 -90335074 + B1F2 SINE Alu 13 142 -7 3 842 726 122 0 0 chr9 33741098 33741237 -90334935 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 3 842 456 274 48 12 chr9 33741759 33741925 -90334247 - L3 LINE CR1 -3347 1142 971 3 842 465 237 52 0 chr9 33742454 33742551 -90333621 + ORR1E LTR MaLR 1 102 -257 3 842 441 0 0 0 chr9 33743909 33743958 -90332214 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 842 312 102 0 0 chr9 33744176 33744225 -90331947 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 842 848 296 52 4 chr9 33744264 33744495 -90331677 - B4A SINE B4 -48 244 3 3 842 255 306 53 46 chr9 33744724 33744875 -90331297 - L1M5 LINE L1 -400 5779 5628 3 842 616 299 7 20 chr9 33744900 33745047 -90331125 + B3A SINE B2 2 146 -52 3 842 782 264 25 20 chr9 33745972 33746173 -90329999 - ORR1D2 LTR MaLR 0 370 169 3 842 623 149 7 0 chr9 33746177 33746331 -90329841 + GA-rich Low_complexity Low_complexity 2 156 0 3 842 477 265 46 72 chr9 33746337 33746378 -90329794 - ORR1D2 LTR MaLR -184 190 147 3 842 270 0 0 0 chr9 33746378 33746408 -90329764 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 842 513 265 46 72 chr9 33746408 33746561 -90329611 - ORR1D2 LTR MaLR -228 146 1 3 842 546 246 144 74 chr9 33747485 33747770 -90328402 - Lx6 LINE L1 -6 7454 7150 3 842 318 242 31 71 chr9 33747767 33747865 -90328307 + Lx6 LINE L1 7061 7154 -306 3 842 319 331 208 60 chr9 33748060 33748265 -90327907 - MLT1F2 LTR MaLR -5 555 328 3 842 240 35 0 0 chr9 33748265 33748294 -90327878 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 842 319 331 208 60 chr9 33748294 33748570 -90327602 - MLT1F2 LTR MaLR -233 327 3 3 842 2471 63 121 25 chr9 33749637 33749993 -90326179 + RLTR10 LTR ERVK 1 390 0 3 842 441 333 16 0 chr9 33750150 33750276 -90325896 - MER94 DNA AcHobo -1 133 6 3 842 294 73 0 0 chr9 33750892 33750933 -90325239 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 842 21 0 0 0 chr9 33751259 33751280 -90324892 + AT_rich Low_complexity Low_complexity 1 21 0 3 842 3456 139 19 15 chr9 33751351 33751877 -90324295 + Lx3C LINE L1 6431 6958 -18 3 842 4576 231 79 22 chr9 33751941 33753045 -90323127 - Lx6 LINE L1 -19 7441 6275 3 842 16045 188 60 121 chr9 33753104 33754387 -90321785 - Lx6 LINE L1 -1625 6071 4733 3 842 240 35 0 0 chr9 33754387 33754416 -90321756 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 842 16045 179 51 143 chr9 33754416 33755388 -90320784 - Lx6 LINE L1 -1148 4732 3965 3 842 274 23 0 44 chr9 33755388 33755433 -90320739 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 842 16045 179 51 143 chr9 33755433 33757142 -90319030 - Lx6 LINE L1 -1916 3964 2551 3 842 3676 18 5 0 chr9 33757142 33757536 -90318636 + MTA_Mm LTR MaLR 1 396 0 3 842 9704 32 6 1 chr9 33757536 33758629 -90317543 + MTA_Mm-int LTR MaLR 1 1098 0 3 842 3676 18 5 0 chr9 33758629 33759023 -90317149 + MTA_Mm LTR MaLR 1 396 0 3 842 16045 179 51 143 chr9 33759023 33759511 -90316661 - Lx6 LINE L1 -3330 2550 2067 3 842 288 0 0 0 chr9 33759511 33759543 -90316629 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 842 16045 176 58 111 chr9 33759543 33760467 -90315705 - Lx6 LINE L1 -3814 2066 1114 3 842 674 252 0 40 chr9 33760471 33760620 -90315552 + B1_Mus1 SINE Alu 6 148 0 3 842 3702 227 34 18 chr9 33760635 33761459 -90314713 - Lx6 LINE L1 -6600 1128 292 3 842 215 381 10 10 chr9 33762605 33762703 -90313469 - MIRb SINE MIR -149 119 22 3 842 39429 4 0 0 chr9 33763321 33768487 -90307685 + L1Md_A LINE L1 420 5586 -297 3 842 9590 4 0 0 chr9 33768487 33769483 -90306689 + L1Md_A LINE L1 5587 6582 0 3 842 6820 102 8 5 chr9 33772001 33773714 -90302458 + L1Md_F3 LINE L1 410 2086 -3797 3 842 7715 58 9 1 chr9 33773711 33774676 -90301496 + L1Md_F3 LINE L1 4616 5588 -295 3 842 8319 42 13 5 chr9 33774677 33775656 -90300516 + L1Md_F3 LINE L1 5590 6576 -8 3 842 210 71 0 0 chr9 33775768 33775796 -90300376 + (TATG)n Simple_repeat Simple_repeat 4 31 0 3 842 2676 32 13 0 chr9 33775990 33776300 -90299872 - L1Md_F3 LINE L1 -2 6582 6269 3 842 563 285 10 36 chr9 33777666 33777859 -90298313 - MER58A DNA MER1_type 0 224 37 3 842 297 0 0 0 chr9 33778056 33778089 -90298083 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 842 180 0 0 0 chr9 33778390 33778410 -90297762 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3 842 1944 293 21 24 chr9 33778484 33779201 -90296971 - Lx7 LINE L1 -429 7267 6553 3 842 552 42 0 0 chr9 33779562 33779633 -90296539 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 842 1782 144 109 9 chr9 33780622 33780944 -90295228 - ORR1B1 LTR MaLR 0 394 41 3 842 1348 271 16 16 chr9 33781041 33781363 -90294809 - MTE2b LTR MaLR 0 379 58 3 842 440 258 10 10 chr9 33781363 33781461 -90294711 - MTE2b LTR MaLR -281 98 1 3 842 195 42 0 0 chr9 33781572 33781596 -90294576 + (GGA)n Simple_repeat Simple_repeat 3 26 0 3 842 390 301 43 103 chr9 33781861 33782046 -90294126 - MTEa LTR MaLR -200 179 6 3 842 47 78 0 0 chr9 33782252 33782355 -90293817 + AT_rich Low_complexity Low_complexity 1 103 0 3 842 424 345 75 15 chr9 33783608 33783876 -90292296 + B4A SINE B4 1 284 -8 3 842 288 242 21 21 chr9 33783881 33783974 -90292198 + (CATA)n Simple_repeat Simple_repeat 2 94 0 3 842 208 291 0 0 chr9 33784717 33784772 -90291400 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 842 1967 236 11 27 chr9 33784902 33785350 -90290822 - RLTR20B2 LTR ERVK 0 560 120 3 842 486 0 0 0 chr9 33785350 33785404 -90290768 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 842 319 51 0 0 chr9 33785436 33785475 -90290697 + B1_Mus1 SINE Alu 25 63 -85 3 842 12701 77 15 1 chr9 33785482 33787945 -90288227 - L1_Mus2 LINE L1 0 6566 4068 3 842 431 187 0 13 chr9 33787946 33788022 -90288150 - RLTR20B2 LTR ERVK -449 111 37 3 842 276 372 19 13 chr9 33788030 33788188 -90287984 + L1MB8 LINE L1 308 466 -6868 3 842 603 306 114 79 chr9 33788339 33789170 -90287002 + L1MB8 LINE L1 682 1501 -5833 3 842 360 0 0 0 chr9 33789170 33789210 -90286962 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 842 603 306 114 79 chr9 33789210 33789346 -90286826 + L1MB8 LINE L1 1502 1631 -5703 3 842 2601 168 0 16 chr9 33789346 33789799 -90286373 + Lx3A LINE L1 6529 6974 -7 3 842 207 0 0 0 chr9 33789807 33789830 -90286342 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 842 603 306 114 79 chr9 33789830 33789936 -90286236 + L1MB8 LINE L1 1650 1801 -5533 3 842 316 303 70 19 chr9 33789937 33790095 -90286077 + L1MB8 LINE L1 6088 6253 -753 3 842 1091 74 0 20 chr9 33790256 33790393 -90285779 + B1_Mus1 SINE Alu 1 137 -11 3 842 276 53 0 0 chr9 33790393 33790431 -90285741 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 842 1091 74 0 20 chr9 33790431 33790444 -90285728 + B1_Mus1 SINE Alu 138 148 0 3 842 228 137 0 0 chr9 33790508 33790559 -90285613 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 842 436 282 115 23 chr9 33790710 33791058 -90285114 + L1MB8 LINE L1 6657 7036 -2 3 842 560 336 14 56 chr9 33791068 33791355 -90284817 + B4A SINE B4 2 276 -16 3 842 285 182 0 0 chr9 33791359 33791414 -90284758 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 842 351 65 0 0 chr9 33791522 33791568 -90284604 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 842 270 257 38 148 chr9 33791628 33791838 -90284334 - B3A SINE B2 -11 187 1 3 842 907 295 69 14 chr9 33792076 33792437 -90283735 - Lx8 LINE L1 0 7473 7093 3 842 414 0 0 0 chr9 33793844 33793890 -90282282 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 842 611 296 0 0 chr9 33794604 33794739 -90281433 + B3A SINE B2 1 135 -63 3 842 333 0 0 0 chr9 33794754 33794791 -90281381 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 842 273 336 17 8 chr9 33794846 33794963 -90281209 + GA-rich Low_complexity Low_complexity 2 119 0 3 842 5369 45 0 3 chr9 33795453 33796103 -90280069 - L1Md_F2 LINE L1 -12 6570 5923 3 842 324 291 41 71 chr9 33796153 33796323 -90279849 + MER3 DNA MER1_type 44 208 -1 3 842 3761 117 24 22 chr9 33796920 33797513 -90278659 + Lx LINE L1 6061 6654 0 3 842 245 365 0 13 chr9 33797612 33797687 -90278485 + ID4 SINE ID 8 81 -2 3 842 384 88 0 0 chr9 33798020 33798077 -90278095 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 842 756 242 7 0 chr9 33799308 33799457 -90276715 - B1_Mur4 SINE Alu 0 150 1 3 842 342 328 50 118 chr9 33799457 33799531 -90276641 - B4 SINE B4 -216 76 18 3 842 21 0 0 0 chr9 33799622 33799643 -90276529 + AT_rich Low_complexity Low_complexity 1 21 0 3 842 454 309 50 40 chr9 33799847 33800046 -90276126 + B3 SINE B2 1 201 -15 3 842 254 26 53 0 chr9 33800118 33800156 -90276016 + (TATG)n Simple_repeat Simple_repeat 3 42 0 3 842 257 257 27 0 chr9 33800156 33800229 -90275943 - ORR1E LTR MaLR -320 74 1 4 842 8980 49 3 0 chr9 33800732 33802609 -90273563 - L1Md_F2 LINE L1 0 6582 4701 4 842 892 280 23 14 chr9 33802873 33803087 -90273085 - B3 SINE B2 0 216 1 4 842 901 165 0 9 chr9 33804001 33804218 -90271954 + GA-rich Low_complexity Low_complexity 1 214 0 4 842 874 148 0 12 chr9 33804246 33804410 -90271762 + GA-rich Low_complexity Low_complexity 1 162 0 4 842 762 105 0 0 chr9 33804410 33804524 -90271648 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 4 842 597 267 9 176 chr9 33804652 33804879 -90271293 + B3 SINE B2 7 216 0 4 842 1210 270 47 69 chr9 33805485 33805552 -90270620 + Lx6 LINE L1 7060 7123 -337 4 842 3586 47 2 7 chr9 33805552 33806007 -90270165 - L1Md_F2 LINE L1 0 6582 6130 4 842 1210 270 47 69 chr9 33806007 33806345 -90269827 + Lx6 LINE L1 7124 7456 -4 4 842 1465 245 54 35 chr9 33807353 33807725 -90268447 + MTE2a LTR MaLR 1 379 0 4 842 477 300 63 53 chr9 33807735 33807925 -90268247 + Tigger7 DNA MER2_type 109 300 -2191 4 842 908 272 86 114 chr9 33807957 33808343 -90267829 - MTE2a LTR MaLR 0 379 5 4 842 586 284 84 66 chr9 33808344 33808664 -90267508 + Tigger7 DNA MER2_type 2160 2485 -6 4 842 846 191 7 0 chr9 33809104 33809245 -90266927 + B1_Mus1 SINE Alu 6 147 -1 4 842 272 363 186 25 chr9 33810787 33810948 -90265224 - LFSINE_Vert SINE SINE -36 423 237 4 842 394 366 102 9 chr9 33811432 33811658 -90264514 - MIR SINE MIR 0 262 16 4 842 200 219 264 49 chr9 33813173 33813317 -90262855 + L2 LINE L2 2090 2264 -1155 4 842 378 0 0 0 chr9 33813480 33813522 -90262650 + (TTA)n Simple_repeat Simple_repeat 2 43 0 4 842 260 335 82 31 chr9 33813633 33813827 -90262345 + L2 LINE L2 2648 2851 -568 4 842 333 0 0 0 chr9 33815799 33815836 -90260336 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 842 209 136 45 15 chr9 33816411 33816478 -90259694 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 105 646 303 77 88 chr9 33816574 33816930 -90259242 - MLT1G3 LTR MaLR -80 499 114 4 843 223 96 19 19 chr9 33816930 33816983 -90259189 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 4 843 559 266 0 0 chr9 33817173 33817282 -90258890 + B1F SINE Alu 12 120 -29 4 843 437 292 0 51 chr9 33817282 33817310 -90258862 + ID_B1 SINE B4 93 222 -2 4 843 204 40 0 0 chr9 33817386 33817411 -90258761 + (CG)n Simple_repeat Simple_repeat 1 25 0 4 843 225 0 0 0 chr9 33817411 33817435 -90258737 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 843 387 133 37 19 chr9 33818653 33818760 -90257412 + GA-rich Low_complexity Low_complexity 2 110 0 4 843 709 41 10 10 chr9 33818761 33818859 -90257313 + (GAGAA)n Simple_repeat Simple_repeat 2 99 0 4 843 272 305 35 78 chr9 33820530 33820672 -90255500 + MER5B DNA MER1_type 7 142 -36 4 843 206 32 32 0 chr9 33821305 33821336 -90254836 + (TTTCC)n Simple_repeat Simple_repeat 4 35 0 4 843 527 299 96 13 chr9 33822693 33822849 -90253323 + B3A SINE B2 4 172 -26 4 843 209 258 95 16 chr9 33822865 33822928 -90253244 - L2c LINE L2 -44 3343 3276 4 843 21 0 0 0 chr9 33823674 33823695 -90252477 + AT_rich Low_complexity Low_complexity 1 21 0 4 843 273 57 0 0 chr9 33823956 33823991 -90252181 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 4 843 196 298 0 0 chr9 33824538 33824595 -90251577 + MIRm SINE MIR 91 147 -129 4 843 616 278 27 50 chr9 33824843 33825063 -90251109 + B3 SINE B2 1 215 -1 4 843 491 174 253 14 chr9 33825146 33825292 -90250880 + URR1B DNA MER1_type 2 182 -43 4 843 1201 62 0 0 chr9 33825294 33825440 -90250732 + B1_Mus2 SINE Alu 2 147 0 4 843 234 91 0 0 chr9 33825440 33825473 -90250699 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 4 843 235 167 0 0 chr9 33825473 33825521 -90250651 + URR1B DNA MER1_type 172 219 -6 4 843 393 278 59 24 chr9 33825909 33826063 -90250109 - MIRb SINE MIR -32 176 19 4 843 21 0 0 0 chr9 33827454 33827475 -90248697 + AT_rich Low_complexity Low_complexity 1 21 0 4 843 286 350 33 16 chr9 33827979 33828162 -90248010 + HAL1 LINE L1 195 380 -2127 4 843 504 0 0 0 chr9 33828424 33828480 -90247692 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 843 3218 39 3 0 chr9 33828480 33828860 -90247312 - L1Md_F3 LINE L1 -21 6563 6183 4 843 7498 92 30 19 chr9 33829039 33830044 -90246128 + Lx3A LINE L1 4718 5716 -170 4 843 207 0 0 0 chr9 33830044 33830067 -90246105 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 843 7498 118 45 36 chr9 33830067 33831293 -90244879 + Lx3A LINE L1 5714 6966 -15 4 843 405 0 0 0 chr9 33831293 33831338 -90244834 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 4 843 8518 181 45 18 chr9 33831338 33834081 -90242091 + Lx4B LINE L1 4184 6981 -19 4 843 234 125 75 0 chr9 33834084 33834124 -90242048 + URR1B DNA MER1_type 129 171 -54 4 843 655 342 49 0 chr9 33834214 33834518 -90241654 - RMER15-int LTR ERVL -3935 1064 746 4 843 2259 297 52 12 chr9 33834506 33835345 -90240827 - RMER15-int LTR ERVL -4123 876 4 4 843 787 251 45 119 chr9 33835398 33835800 -90240372 - RMER15 LTR ERVL -87 488 1 4 843 422 317 50 6 chr9 33835847 33836028 -90240144 - ORR1E LTR MaLR -170 189 1 4 843 435 202 31 21 chr9 33836218 33836314 -90239858 - RLTR20B2 LTR ERVK 0 560 464 4 843 279 0 0 0 chr9 33836315 33836346 -90239826 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 843 459 0 0 0 chr9 33836346 33836396 -90239776 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 843 1915 176 30 50 chr9 33836408 33836804 -90239368 - RLTR20B2 LTR ERVK -172 388 1 4 843 267 270 130 0 chr9 33836905 33837011 -90239161 - MIRb SINE MIR -112 164 47 4 843 205 195 0 24 chr9 33838249 33838291 -90237881 + CT-rich Low_complexity Low_complexity 1 41 0 4 843 330 231 0 0 chr9 33838788 33838879 -90237293 + (TG)n Simple_repeat Simple_repeat 1 91 0 4 843 561 47 0 95 chr9 33839762 33839857 -90236315 + L1_Mus3 LINE L1 6541 6626 -12 4 843 500 45 0 15 chr9 33839860 33839928 -90236244 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 4 843 1396 272 27 55 chr9 33840694 33841242 -90234930 + Lx9 LINE L1 7112 7644 0 4 843 342 310 148 17 chr9 33841267 33841382 -90234790 - B1F SINE Alu -15 134 5 4 843 429 298 118 57 chr9 33841406 33841526 -90234646 + L1ME3A LINE L1 1788 1916 -4326 4 843 1885 136 129 50 chr9 33841526 33841966 -90234206 - IAPLTR2_Mm LTR ERVK 0 475 1 4 843 429 298 118 57 chr9 33841966 33842194 -90233978 + L1ME3A LINE L1 1917 2157 -4085 4 843 796 275 118 76 chr9 33842387 33843071 -90233101 + L1ME3A LINE L1 3623 4335 -1811 4 843 252 207 35 0 chr9 33843287 33843345 -90232827 + L1ME3A LINE L1 5033 5092 -1054 4 843 831 243 0 0 chr9 33843509 33843661 -90232511 + B3A SINE B2 3 154 -44 4 843 453 50 0 0 chr9 33843661 33843721 -90232451 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 843 23 68 0 0 chr9 33843759 33843803 -90232369 + AT_rich Low_complexity Low_complexity 1 44 0 4 843 414 114 0 0 chr9 33843878 33843957 -90232215 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 843 378 0 0 0 chr9 33844031 33844073 -90232099 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 843 254 325 107 17 chr9 33844497 33844797 -90231375 + L1ME3A LINE L1 5665 5991 -182 4 843 22 0 0 0 chr9 33845015 33845037 -90231135 + AT_rich Low_complexity Low_complexity 1 22 0 4 843 515 282 152 56 chr9 33845560 33845830 -90230342 - MLT1F1 LTR MaLR -2 567 272 4 843 1230 156 133 62 chr9 33845883 33846191 -90229981 + L1_Mus2 LINE L1 6237 6566 0 4 843 533 272 116 0 chr9 33846285 33846432 -90229740 + B4A SINE B4 43 206 -86 4 843 951 26 25 31 chr9 33846433 33846593 -90229579 + (GAGAA)n Simple_repeat Simple_repeat 5 163 0 4 843 10123 219 68 46 chr9 33846925 33850790 -90225382 + Lx5 LINE L1 3068 7031 -19 4 843 21 0 0 0 chr9 33850801 33850822 -90225350 + AT_rich Low_complexity Low_complexity 1 21 0 4 843 594 338 66 44 chr9 33850889 33851462 -90224710 + L1M5 LINE L1 3348 3933 -2213 4 843 407 178 25 25 chr9 33851615 33851736 -90224436 + GA-rich Low_complexity Low_complexity 3 123 0 4 843 337 304 95 20 chr9 33851738 33851886 -90224286 + HAL1-3A_ME LINE L1 2285 2443 -415 4 843 212 0 36 0 chr9 33852165 33852193 -90223979 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 843 325 292 112 36 chr9 33852195 33852525 -90223647 + L1M5 LINE L1 4413 4767 -1379 4 843 703 180 37 6 chr9 33853242 33853404 -90222768 + Lx3B LINE L1 6777 6943 -30 4 843 471 113 0 0 chr9 33853409 33853480 -90222692 + (TAA)n Simple_repeat Simple_repeat 3 73 0 4 843 683 262 0 0 chr9 33853756 33853897 -90222275 + B1_Mur2 SINE Alu 1 141 -8 4 843 499 83 11 35 chr9 33855002 33855089 -90221083 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 843 690 307 53 29 chr9 33855089 33855297 -90220875 - B4 SINE B4 -78 214 2 4 843 2732 250 106 31 chr9 33855479 33855997 -90220175 + RCHARR1 DNA MER1_type 5 514 -460 4 843 342 0 0 0 chr9 33855997 33856035 -90220137 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 843 2732 250 106 31 chr9 33856035 33856415 -90219757 + RCHARR1 DNA MER1_type 515 969 -5 4 843 413 355 88 58 chr9 33856671 33857048 -90219124 - MER21B LTR ERV1 -111 752 365 4 843 497 330 5 42 chr9 33858164 33858354 -90217818 + B3A SINE B2 1 183 -15 4 843 312 241 47 24 chr9 33858397 33858482 -90217690 - MER45A DNA Tip100 -1 177 91 4 843 2401 228 75 5 chr9 33858484 33859044 -90217128 + Lx6 LINE L1 6854 7452 -8 4 843 226 344 0 0 chr9 33859156 33859220 -90216952 - MER5A1 DNA MER1_type -102 64 1 4 843 401 288 0 0 chr9 33859848 33859959 -90216213 + PB1D7 SINE Alu 1 111 -9 4 843 210 105 0 0 chr9 33860822 33860860 -90215312 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 843 306 0 0 0 chr9 33861353 33861387 -90214785 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 843 255 31 0 0 chr9 33861398 33861430 -90214742 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 843 1138 302 0 39 chr9 33861469 33861800 -90214372 - ORR1E LTR MaLR -41 318 1 4 843 225 238 0 0 chr9 33862805 33862847 -90213325 + MamSINE1 SINE tRNA 13 54 -236 4 843 541 182 0 14 chr9 33862863 33863008 -90213164 + CT-rich Low_complexity Low_complexity 2 144 0 4 843 439 330 81 55 chr9 33863157 33863430 -90212742 + L1MD2 LINE L1 25 304 -6243 4 843 327 25 0 0 chr9 33863875 33863915 -90212257 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 843 723 54 0 0 chr9 33863916 33864008 -90212164 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 843 536 138 0 8 chr9 33864008 33864125 -90212047 + (GA)n Simple_repeat Simple_repeat 1 116 0 5 843 363 304 72 69 chr9 33864132 33864506 -90211666 + L1MD LINE L1 5396 5771 -471 5 843 230 381 30 7 chr9 33864993 33865128 -90211044 - MIRb SINE MIR -67 201 64 5 843 531 0 0 0 chr9 33867275 33867334 -90208838 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 843 2114 188 103 59 chr9 33867459 33868002 -90208170 + RMER2 LTR ERV1 1 567 0 5 843 288 53 0 0 chr9 33871154 33871192 -90204980 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 5 843 766 286 23 19 chr9 33871363 33871529 -90204643 + B3 SINE B2 1 163 -53 5 843 320 111 16 0 chr9 33871529 33871592 -90204580 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 843 766 286 23 19 chr9 33871592 33871614 -90204558 + B3 SINE B2 164 185 -31 5 843 1200 100 39 34 chr9 33871614 33871821 -90204351 - L1_Mus3 LINE L1 -7 6631 6424 5 843 766 286 23 19 chr9 33871821 33871845 -90204327 + B3 SINE B2 186 213 -3 5 843 991 186 135 7 chr9 33871845 33872126 -90204046 + Lx9 LINE L1 7327 7643 -1 5 843 1431 178 207 7 chr9 33872454 33872859 -90203313 + Lx3C LINE L1 6486 6971 -5 5 843 501 255 38 22 chr9 33873219 33873416 -90202756 - Lx5 LINE L1 -26 7434 7257 5 843 1740 268 60 96 chr9 33873448 33873790 -90202382 + Lx5 LINE L1 6163 6477 -581 5 843 252 0 0 0 chr9 33873790 33873818 -90202354 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 843 2096 229 45 76 chr9 33873818 33874419 -90201753 + Lx5 LINE L1 6455 7021 -29 5 843 278 47 47 0 chr9 33874423 33874466 -90201706 + (CATAA)n Simple_repeat Simple_repeat 1 45 0 5 843 1174 305 10 36 chr9 33874474 33874858 -90201314 - Lx5 LINE L1 -167 6883 6510 5 843 518 284 81 0 chr9 33874883 33875105 -90201067 + L1MD2 LINE L1 5052 5291 -855 5 843 531 0 0 0 chr9 33875148 33875207 -90200965 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 843 636 309 27 0 chr9 33875208 33875502 -90200670 + L1MD2 LINE L1 5323 5624 -618 5 843 4702 84 50 0 chr9 33875593 33876239 -90199933 - L1_Mus4 LINE L1 -6 6630 5953 5 843 1907 85 11 0 chr9 33876239 33876511 -90199661 + L1_Mus4 LINE L1 5747 6021 -615 5 843 813 261 158 30 chr9 33876511 33876776 -90199396 + MTEb LTR MaLR 76 374 -5 5 843 503 305 103 20 chr9 33876785 33877126 -90199046 + L1MD2 LINE L1 5622 5990 -252 5 843 243 88 0 0 chr9 33877209 33877243 -90198929 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 5 843 435 290 71 129 chr9 33877245 33877310 -90198862 + MLT1A LTR MaLR 21 84 -290 5 843 722 194 181 10 chr9 33877310 33877503 -90198669 - URR1A DNA MER1_type 0 226 1 5 843 435 290 71 129 chr9 33877503 33877746 -90198426 + MLT1A LTR MaLR 85 311 -63 5 843 579 299 50 27 chr9 33877772 33878030 -90198142 + L1MD2 LINE L1 6078 6341 -18 5 843 32748 76 3 5 chr9 33878415 33884704 -90191468 - L1Md_F2 LINE L1 0 6582 301 5 843 569 284 13 100 chr9 33885642 33885873 -90190299 - B3A SINE B2 -5 211 1 5 843 236 255 0 0 chr9 33886434 33886485 -90189687 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 843 859 222 33 16 chr9 33886962 33887145 -90189027 - MTC LTR MaLR 0 421 236 5 843 5063 176 90 9 chr9 33887147 33888195 -90187977 - ORR1B1-int LTR MaLR -125 1133 1 5 843 1350 199 25 185 chr9 33888195 33888307 -90187865 - ORR1B1 LTR MaLR 0 367 312 5 843 1022 135 0 0 chr9 33888307 33888455 -90187717 - B1_Mus1 SINE Alu 0 148 1 5 843 1726 158 102 3 chr9 33888455 33888779 -90187393 - ORR1B1 LTR MaLR -38 356 1 5 843 376 286 154 22 chr9 33888899 33889035 -90187137 + RSINE1 SINE B4 12 165 0 5 843 23 33 0 0 chr9 33889040 33889070 -90187102 + AT_rich Low_complexity Low_complexity 1 30 0 5 843 888 261 18 22 chr9 33889325 33889551 -90186621 + B4A SINE B4 6 230 -62 5 843 332 300 129 112 chr9 33889551 33889829 -90186343 + B4 SINE B4 2 284 -8 5 843 1214 209 197 79 chr9 33889989 33890457 -90185715 + RLTR20C LTR ERVK 1 523 -11 5 843 210 143 0 0 chr9 33890486 33890521 -90185651 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 843 21 0 0 0 chr9 33891017 33891038 -90185134 + AT_rich Low_complexity Low_complexity 1 21 0 5 843 343 272 87 0 chr9 33891100 33891192 -90184980 - PB1D10 SINE Alu -17 100 1 5 843 271 349 151 0 chr9 33891459 33891565 -90184607 - ID_B1 SINE B4 -23 201 80 5 843 698 293 64 110 chr9 33891687 33892078 -90184094 + MTEa LTR MaLR 1 373 -6 5 843 229 295 24 49 chr9 33892679 33892761 -90183411 - Charlie25 DNA MER1_type -476 2048 1969 5 843 303 246 15 0 chr9 33893072 33893137 -90183035 + L1MEg LINE L1 1882 1947 -4137 5 843 864 260 51 34 chr9 33893404 33893985 -90182187 - Charlie14a DNA MER1_type 0 1164 56 5 843 396 292 9 9 chr9 33894432 33894539 -90181633 + RSINE1 SINE B4 36 142 -23 5 843 444 19 0 0 chr9 33894561 33894614 -90181558 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 843 26 64 0 0 chr9 33894618 33894665 -90181507 + AT_rich Low_complexity Low_complexity 1 47 0 5 843 340 297 111 63 chr9 33895382 33895684 -90180488 - L1ME1 LINE L1 -141 6038 5726 5 843 244 280 93 0 chr9 33896135 33896253 -90179919 - L1M4 LINE L1 -3591 2555 2427 5 843 639 296 79 6 chr9 33896462 33896792 -90179380 + L1ME3B LINE L1 4386 4739 -1407 5 843 257 363 33 0 chr9 33896820 33896911 -90179261 - PB1D10 SINE Alu -21 96 3 5 843 249 275 67 67 chr9 33897164 33897359 -90178813 + L1ME3B LINE L1 5295 5489 -684 5 843 342 248 78 10 chr9 33897472 33897574 -90178598 + MLT1A0 LTR MaLR 27 135 -230 5 843 399 338 59 0 chr9 33897620 33897756 -90178416 + MLT1A0 LTR MaLR 213 356 -9 5 843 547 311 42 19 chr9 33897800 33898108 -90178064 + L1ME3B LINE L1 5676 5990 -250 5 843 1222 251 49 30 chr9 33898801 33899171 -90177001 - MTEa LTR MaLR -2 377 1 5 843 392 0 21 0 chr9 33899659 33899707 -90176465 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 843 297 0 0 0 chr9 33899707 33899739 -90176433 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 843 698 360 50 50 chr9 33900057 33900077 -90176095 - Lx8 LINE L1 -492 6981 6962 5 843 1778 153 90 62 chr9 33900077 33900433 -90175739 + ORR1B2 LTR MaLR 2 367 0 5 843 698 360 50 50 chr9 33900433 33901009 -90175163 - Lx8 LINE L1 -512 6961 6386 5 843 225 0 0 0 chr9 33901312 33901337 -90174835 + (T)n Simple_repeat Simple_repeat 1 25 0 5 843 537 230 6 75 chr9 33901337 33901360 -90174812 + ID_B1 SINE B4 76 224 0 5 843 1005 88 0 0 chr9 33901360 33901497 -90174675 + B1_Mus1 SINE Alu 12 148 0 5 843 264 91 0 0 chr9 33901497 33901541 -90174631 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 5 843 6265 67 13 5 chr9 33901594 33902559 -90173613 + L1_Mus1 LINE L1 5425 6395 -172 5 843 922 221 92 0 chr9 33902559 33902776 -90173396 - Lx7 LINE L1 -1835 5861 5625 5 843 381 75 0 0 chr9 33904533 33904586 -90171586 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 5 843 215 209 0 0 chr9 33904587 33904630 -90171542 + CT-rich Low_complexity Low_complexity 2 44 0 5 843 604 272 56 48 chr9 33904632 33905006 -90171166 + L1MEf LINE L1 666 1042 -5200 5 843 462 276 68 17 chr9 33905040 33905158 -90171014 + ID_B1 SINE B4 101 224 0 5 843 542 230 58 35 chr9 33905414 33905585 -90170587 + Lx7 LINE L1 7522 7696 0 5 843 966 270 151 10 chr9 33906073 33906372 -90169800 + ORR1D2 LTR MaLR 30 370 0 5 843 530 326 20 30 chr9 33906641 33906843 -90169329 - MER21B LTR ERV1 -38 825 626 5 843 3647 43 44 13 chr9 33907101 33907576 -90168596 - L1Md_F2 LINE L1 0 6582 6093 5 843 3782 152 31 16 chr9 33907673 33908341 -90167831 + RLTR33 LTR ERVK 1 678 0 5 843 825 326 80 61 chr9 33908373 33908798 -90167374 - MER21B LTR ERV1 -396 467 35 5 843 415 324 77 44 chr9 33908803 33909077 -90167095 + MT2A LTR ERVL 1 283 -250 5 843 705 268 50 67 chr9 33909222 33909700 -90166472 + MTC-int LTR MaLR 10 901 -679 5 843 1499 242 39 26 chr9 33909702 33910108 -90166064 + MTD LTR MaLR 1 397 -22 5 843 415 351 44 18 chr9 33910151 33910377 -90165795 + L1MEf LINE L1 1516 1747 -4495 5 843 472 281 162 0 chr9 33910385 33910638 -90165534 + L1MA8 LINE L1 3451 3744 -2396 5 843 754 273 22 11 chr9 33910787 33910972 -90165200 - ORR1E LTR MaLR -172 187 1 5 843 1568 288 73 68 chr9 33910972 33912144 -90164028 + L1MA8 LINE L1 3870 5047 -1096 5 843 590 287 0 0 chr9 33912235 33912357 -90163815 + B1_Mur1 SINE Alu 15 136 -13 5 843 467 266 74 7 chr9 33912741 33912958 -90163214 + L1MA8 LINE L1 5263 5491 -671 5 843 283 353 44 22 chr9 33912965 33913101 -90163071 + RSINE1 SINE B4 24 162 -3 5 843 1242 90 0 0 chr9 33913218 33913396 -90162776 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 5 843 4891 68 8 0 chr9 33913396 33914028 -90162144 - L1_Mus2 LINE L1 -342 6224 5588 5 843 1679 80 106 74 chr9 33914043 33914327 -90161845 + L1_Mus2 LINE L1 6273 6565 -1 5 843 1008 286 109 58 chr9 33914356 33915001 -90161171 + L1MA8 LINE L1 5581 6258 -33 5 843 186 71 0 0 chr9 33915001 33915029 -90161143 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 843 1008 286 109 58 chr9 33915029 33915054 -90161118 + L1MA8 LINE L1 6259 6285 -6 5 843 360 293 31 42 chr9 33915190 33915501 -90160671 + L1MEf LINE L1 4451 4756 -1390 5 843 270 56 0 0 chr9 33915679 33915715 -90160457 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 843 314 289 25 0 chr9 33915719 33915840 -90160332 + L1M2 LINE L1 5563 5686 -614 5 843 342 206 0 0 chr9 33915843 33915916 -90160256 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 843 4997 102 27 8 chr9 33916028 33917612 -90158560 + L1Md_F LINE L1 238 1841 -4042 5 843 3774 87 4 8 chr9 33917612 33918136 -90158036 + L1Md_F2 LINE L1 6061 6582 0 5 843 869 290 54 55 chr9 33918329 33918900 -90157272 + L1M4 LINE L1 5174 5747 -432 5 843 462 18 0 0 chr9 33920057 33920112 -90156060 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 843 696 299 7 92 chr9 33921196 33921491 -90154681 + B4 SINE B4 3 272 -20 5 843 351 0 0 0 chr9 33921491 33921530 -90154642 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 843 288 0 0 0 chr9 33921530 33921561 -90154611 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 843 351 167 0 0 chr9 33921561 33921651 -90154521 + GA-rich Low_complexity Low_complexity 1 90 0 5 843 386 29 29 29 chr9 33922838 33922908 -90153264 + (CAAAAA)n Simple_repeat Simple_repeat 2 71 0 5 843 180 113 56 19 chr9 33923170 33923224 -90152948 + A-rich Low_complexity Low_complexity 2 57 0 5 843 408 295 32 16 chr9 33923336 33923460 -90152712 - LTR85a LTR Gypsy? -3 699 574 5 843 295 352 89 56 chr9 33923438 33923742 -90152430 - LTR85a LTR Gypsy? -132 652 339 5 843 532 341 74 26 chr9 33925434 33925705 -90150467 + B4A SINE B4 4 287 -5 5 843 1047 94 0 0 chr9 33926348 33926497 -90149675 + (GA)n Simple_repeat Simple_repeat 2 150 0 5 843 500 320 16 0 chr9 33926560 33926685 -90149487 + ID_B1 SINE B4 88 214 -10 5 843 265 279 51 14 chr9 33926696 33926834 -90149338 + Lx6 LINE L1 114 256 -7472 5 843 18325 184 27 116 chr9 33926839 33928115 -90148057 + Lx6 LINE L1 861 2058 -3822 5 843 336 48 0 0 chr9 33928115 33928157 -90148015 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 843 18325 189 33 69 chr9 33928157 33929095 -90147077 + Lx6 LINE L1 2059 2997 -2883 5 843 183 42 0 0 chr9 33929095 33929119 -90147053 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 843 18325 189 33 69 chr9 33929119 33932088 -90144084 + Lx6 LINE L1 2998 5783 -97 5 843 350 21 0 21 chr9 33932088 33932136 -90144036 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 843 18325 237 97 27 chr9 33932136 33932681 -90143491 + Lx6 LINE L1 5780 6379 -1081 5 843 562 324 97 62 chr9 33933173 33934280 -90141892 - L1M5 LINE L1 -2315 3831 2677 6 843 1884 36 0 0 chr9 33934420 33934644 -90141528 - L1Md_T LINE L1 -2 6580 6357 6 843 210 295 20 0 chr9 33934665 33934743 -90141429 - L2b LINE L2 0 3426 3296 6 843 214 288 0 55 chr9 33934997 33935052 -90141120 - B1F2 SINE Alu -88 61 10 6 843 1757 241 24 15 chr9 33935058 33935078 -90141094 - MTC LTR MaLR -8 413 394 6 843 216 0 0 0 chr9 33935078 33935102 -90141070 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 6 843 1757 241 24 15 chr9 33935102 33935490 -90140682 - MTC LTR MaLR -28 393 2 6 843 2637 272 108 46 chr9 33936270 33936677 -90139495 - Lx8 LINE L1 -31 7442 6973 6 843 991 80 73 0 chr9 33936677 33936814 -90139358 + B1_Mus2 SINE Alu 1 147 0 6 843 2637 272 108 46 chr9 33936814 33937421 -90138751 - Lx8 LINE L1 -501 6972 6365 6 843 22 0 0 0 chr9 33938114 33938136 -90138036 + AT_rich Low_complexity Low_complexity 1 22 0 6 843 444 230 273 0 chr9 33938139 33938304 -90137868 - B3 SINE B2 -5 211 2 6 843 516 132 0 0 chr9 33938616 33938699 -90137473 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 6 843 227 227 40 13 chr9 33938788 33938864 -90137308 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 843 1387 195 109 18 chr9 33938896 33939225 -90136947 - RLTR15 LTR ERVK 0 359 1 6 843 959 147 6 0 chr9 33940866 33941043 -90135129 + GA-rich Low_complexity Low_complexity 3 180 0 6 843 216 370 16 40 chr9 33941050 33941174 -90134998 - MIRc SINE MIR -124 144 24 6 843 21 0 0 0 chr9 33942625 33942646 -90133526 + AT_rich Low_complexity Low_complexity 1 21 0 6 843 309 365 128 38 chr9 33943452 33943905 -90132267 - L2 LINE L2 -426 2993 2500 6 843 1693 53 0 5 chr9 33944229 33944437 -90131735 - L1_Mus2 LINE L1 -1 6565 6359 6 843 2320 78 3 3 chr9 33944437 33944734 -90131438 + L1_Mus2 LINE L1 6062 6358 -208 6 843 4574 119 6 13 chr9 33944731 33945420 -90130752 - L1_Mus4 LINE L1 -23 6613 5930 6 843 7425 144 21 4 chr9 33945419 33946410 -90129762 + L1_Mm LINE L1 3735 4732 -1151 6 843 207 0 0 0 chr9 33946410 33946433 -90129739 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 843 7425 143 8 139 chr9 33946433 33946796 -90129376 + L1_Mm LINE L1 4727 5018 -859 6 843 1183 88 0 0 chr9 33946796 33946943 -90129229 + B1_Mus1 SINE Alu 2 148 0 6 843 7216 143 8 139 chr9 33946943 33947100 -90129072 + L1_Mm LINE L1 5019 5024 -853 6 843 576 0 0 0 chr9 33947100 33947164 -90129008 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 6 843 7216 143 8 139 chr9 33947164 33947336 -90128836 + L1_Mm LINE L1 5025 5192 -685 6 844 8240 47 17 0 chr9 33947731 33948737 -90127435 - L1Md_F2 LINE L1 -2 6580 5579 6 844 228 171 0 0 chr9 33948840 33948881 -90127291 + MTE2a LTR MaLR 10 50 -329 6 844 567 248 276 16 chr9 33948883 33949129 -90127043 + MTD LTR MaLR 3 312 -107 6 844 498 169 6 22 chr9 33949129 33949311 -90126861 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 6 844 249 33 0 0 chr9 33949315 33949345 -90126827 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 844 234 0 0 0 chr9 33949393 33949419 -90126753 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 844 335 212 41 19 chr9 33949419 33949524 -90126648 + MTD LTR MaLR 309 416 -5 6 844 968 274 34 92 chr9 33949544 33949928 -90126244 + MTE2a LTR MaLR 49 419 0 6 844 3199 234 55 6 chr9 33949929 33950747 -90125425 - RCHARR1 DNA MER1_type -70 904 47 6 844 12585 156 11 19 chr9 33952892 33955163 -90121009 + Lx2B LINE L1 2549 4801 -1076 6 844 6107 205 11 27 chr9 33955156 33956427 -90119745 + Lx2B LINE L1 5590 6840 -160 6 844 2376 183 125 16 chr9 33956547 33957052 -90119120 - Lx7 LINE L1 -806 6890 6331 6 844 279 226 16 0 chr9 33957052 33957114 -90119058 + PB1D10 SINE Alu 54 116 -1 6 844 334 326 160 52 chr9 33957462 33957750 -90118422 + MLT1G LTR MaLR 267 585 -6 6 844 382 299 27 20 chr9 33957824 33957971 -90118201 + L1ME2z LINE L1 6281 6428 -16 6 844 691 181 6 6 chr9 33958835 33958991 -90117181 + CT-rich Low_complexity Low_complexity 1 156 0 6 844 180 77 0 0 chr9 33958990 33959016 -90117156 + (CACCAT)n Simple_repeat Simple_repeat 4 29 0 6 844 286 371 24 0 chr9 33959018 33959185 -90116987 - MIR SINE MIR -78 184 14 6 844 287 270 16 0 chr9 33959785 33959848 -90116324 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 6 844 396 0 0 0 chr9 33959849 33959893 -90116279 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 844 251 300 145 35 chr9 33960540 33960685 -90115487 - RSINE1 SINE B4 -2 163 3 6 844 351 0 0 0 chr9 33960878 33960917 -90115255 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 844 1305 78 0 0 chr9 33961854 33962033 -90114139 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 844 311 326 0 0 chr9 33964602 33964688 -90111484 + RSINE1 SINE B4 2 87 -78 6 844 182 250 102 45 chr9 33965078 33965166 -90111006 - MIRc SINE MIR -174 94 2 6 844 292 239 0 131 chr9 33966066 33966158 -90110014 - MTE2a LTR MaLR 0 379 292 6 844 1420 251 34 28 chr9 33966172 33966492 -90109680 - MTE2a LTR MaLR -57 322 1 6 844 359 228 161 11 chr9 33966625 33966718 -90109454 - PB1D10 SINE Alu -10 107 1 6 844 195 338 0 58 chr9 33968618 33968687 -90107485 + L2a LINE L2 3250 3314 -61 6 844 223 306 70 12 chr9 33969376 33969462 -90106710 + L2a LINE L2 3303 3393 -33 6 844 784 193 51 47 chr9 33969514 33969770 -90106402 - Lx9 LINE L1 -11 7633 7377 6 844 193 350 79 0 chr9 33970518 33970669 -90105503 + MIRb SINE MIR 29 188 -80 6 844 13197 90 3 15 chr9 33970757 33972621 -90103551 - L1_Mus2 LINE L1 0 6566 4735 6 844 2862 63 11 22 chr9 33972621 33972992 -90103180 - L1_Mus1 LINE L1 -4 6563 6197 6 844 13197 108 4 10 chr9 33972992 33973732 -90102440 - L1_Mus2 LINE L1 -1149 4734 3991 6 844 236 130 0 36 chr9 33974616 33974672 -90101500 + (TCTCTG)n Simple_repeat Simple_repeat 4 57 0 6 844 296 281 0 92 chr9 33975112 33975210 -90100962 + ID_B1 SINE B4 115 203 -21 6 844 546 150 0 0 chr9 33975210 33975330 -90100842 + (GA)n Simple_repeat Simple_repeat 1 120 0 6 844 721 348 22 19 chr9 33975839 33976158 -90100014 - MLT1E LTR MaLR -5 648 329 6 844 467 33 16 0 chr9 33976527 33976588 -90099584 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 844 719 326 52 66 chr9 33976772 33977153 -90099019 - MLT1A1 LTR MaLR 0 408 33 6 844 424 388 52 31 chr9 33977318 33977608 -90098564 - MER115 DNA Tip100 -1 692 397 6 844 224 377 19 46 chr9 33978993 33979180 -90096992 + MIRc SINE MIR 42 226 -42 6 844 7885 91 0 16 chr9 33979535 33979784 -90096388 + L1_Mus2 LINE L1 5466 5711 -172 6 844 1256 174 34 134 chr9 33979784 33980142 -90096030 + RLTRETN_Mm LTR ERVK 1 322 0 6 844 7885 61 0 9 chr9 33980142 33981005 -90095167 + L1_Mus2 LINE L1 5712 6566 0 6 844 183 42 0 0 chr9 33981712 33981736 -90094436 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 844 240 35 0 0 chr9 33982106 33982135 -90094037 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 844 276 286 41 71 chr9 33982154 33982252 -90093920 + ORR1E LTR MaLR 9 103 -256 6 844 1168 86 11 0 chr9 33982291 33982466 -90093706 + (TC)n Simple_repeat Simple_repeat 2 178 0 6 844 226 237 83 95 chr9 33982540 33982624 -90093548 + ORR1E LTR MaLR 287 369 -10 6 844 261 327 128 23 chr9 33982689 33982861 -90093311 + MLT1C LTR MaLR 199 388 -79 6 844 1123 67 0 0 chr9 33982933 33983068 -90093104 - B1_Mus1 SINE Alu -12 136 2 6 844 789 194 32 53 chr9 33983079 33983269 -90092903 - B2_Mm2 SINE B2 -9 186 1 6 844 294 143 0 0 chr9 33983413 33983462 -90092710 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 844 207 324 140 59 chr9 33983849 33984085 -90092087 + MIR SINE MIR 4 258 -4 6 844 560 14 14 0 chr9 33984976 33985045 -90091127 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 844 525 16 0 0 chr9 33985577 33985639 -90090533 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 844 380 321 65 14 chr9 33985994 33986133 -90090039 - B1F1 SINE Alu -1 148 3 6 844 21 0 0 0 chr9 33987185 33987206 -90088966 + AT_rich Low_complexity Low_complexity 1 21 0 6 844 633 240 44 35 chr9 33987348 33987551 -90088621 - L1MB1 LINE L1 -10 6179 5975 6 844 226 151 76 76 chr9 33987588 33987667 -90088505 + L1M LINE L1 5283 5361 -819 6 844 270 0 0 0 chr9 33987783 33987813 -90088359 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 844 185 300 25 12 chr9 33987959 33988040 -90088132 + MIRc SINE MIR 54 135 -133 6 844 345 269 116 14 chr9 33989054 33989201 -90086971 - MLT1A0 LTR MaLR 0 365 204 6 844 250 248 127 67 chr9 33989401 33989535 -90086637 - MLT1A0 LTR MaLR -264 144 3 6 844 1022 266 75 21 chr9 33989542 33989876 -90086296 - MLT1A0-int LTR MaLR 0 1735 1384 6 844 539 261 97 34 chr9 33990007 33990245 -90085927 - L1MA4A LINE L1 -297 6003 5751 6 844 2186 318 85 42 chr9 33991016 33991996 -90084176 - MLT1A0-int LTR MaLR -712 1023 2 6 844 314 282 91 0 chr9 33992001 33992111 -90084061 - MLT1A0 LTR MaLR -21 387 268 6 844 289 205 144 38 chr9 33992588 33992631 -90083541 + ORR1B1-int LTR MaLR 594 650 -859 6 844 631 143 0 0 chr9 33992631 33992722 -90083450 + B1_Mus2 SINE Alu 2 92 -55 6 844 342 228 49 140 chr9 33992722 33992771 -90083401 + MT2B2 LTR ERVL 166 292 -292 6 844 217 290 86 74 chr9 33992923 33993098 -90083074 + MIR3 SINE MIR 4 180 -28 6 844 228 86 0 0 chr9 33993464 33993499 -90082673 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 6 844 317 217 17 0 chr9 33995945 33996005 -90080167 - MLT1A1 LTR MaLR -270 138 78 6 844 408 40 0 0 chr9 33996529 33996579 -90079593 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 844 226 412 46 26 chr9 33996839 33996991 -90079181 + L2b LINE L2 3217 3371 -4 6 844 829 293 85 27 chr9 33999568 34000000 -90076172 - Tigger7 DNA MER2_type -2065 426 49 6 844 324 0 0 0 chr9 34000457 34000493 -90075679 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 844 249 33 0 0 chr9 34000943 34000973 -90075199 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 844 368 277 44 9 chr9 34001122 34001235 -90074937 + MIRc SINE MIR 44 160 -108 3 844 24 32 0 0 chr9 34001973 34002004 -90074168 + GC_rich Low_complexity Low_complexity 1 31 0 4 844 490 256 0 18 chr9 34002849 34003020 -90073152 + GA-rich Low_complexity Low_complexity 1 168 0 5 844 228 86 0 0 chr9 34003537 34003572 -90072600 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 844 378 0 0 0 chr9 34003598 34003640 -90072532 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 844 7366 274 63 49 chr9 34003807 34007595 -90068577 + L1_Mur3 LINE L1 1258 5098 -782 8 844 1273 179 4 4 chr9 34007616 34007841 -90068331 - URR1B DNA MER1_type 0 225 1 9 844 2820 299 86 36 chr9 34008468 34010029 -90066143 + Lx8 LINE L1 5802 7440 -33 1 844 213 39 0 0 chr9 34011200 34011226 -90064946 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 844 216 0 0 0 chr9 34012025 34012049 -90064123 + (A)n Simple_repeat Simple_repeat 1 24 0 1 844 2489 7 0 0 chr9 34014304 34014581 -90061591 + L1Md_A LINE L1 6306 6582 0 1 844 316 335 103 0 chr9 34014998 34015153 -90061019 + HAL1-3A_ME LINE L1 2266 2436 -422 1 844 309 89 0 0 chr9 34015239 34015284 -90060888 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 844 377 318 23 0 chr9 34016431 34016560 -90059612 + RMER15 LTR ERVL 428 559 -16 1 844 987 298 84 19 chr9 34016791 34017218 -90058954 + RMER5 LTR ERV1 70 524 -10 1 844 624 38 0 0 chr9 34017223 34017302 -90058870 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 844 428 202 36 55 chr9 34017311 34017421 -90058751 - RSINE1 SINE B4 -46 119 12 1 844 237 245 9 113 chr9 34017319 34017434 -90058738 + AmnSINE1 SINE SINE 129 231 -344 2 844 656 197 189 64 chr9 34017944 34018177 -90057995 + RLTR20C LTR ERVK 51 312 -222 2 844 377 202 141 33 chr9 34018171 34018230 -90057942 + RLTR20C LTR ERVK 421 490 -88 2 844 549 0 0 0 chr9 34018230 34018291 -90057881 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 844 377 202 141 33 chr9 34018291 34018323 -90057849 + RLTR20C LTR ERVK 491 521 -57 2 844 373 297 18 0 chr9 34018361 34018472 -90057700 - Tigger5 DNA MER2_type -65 2341 2230 2 844 1746 214 77 3 chr9 34018505 34018870 -90057302 + MTD LTR MaLR 13 404 -15 2 844 595 323 46 36 chr9 34018874 34019176 -90056996 - Tigger5 DNA MER2_type -2088 318 14 2 844 1538 240 153 43 chr9 34019414 34020068 -90056104 - Lx9 LINE L1 -7 7637 6912 2 844 224 219 0 0 chr9 34020075 34020116 -90056056 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 844 327 356 12 80 chr9 34020163 34020325 -90055847 - B4A SINE B4 -141 151 1 2 844 199 352 114 0 chr9 34021156 34021261 -90054911 - MIRc SINE MIR -112 156 40 2 844 1048 235 104 76 chr9 34021853 34022319 -90053853 + MT2B LTR ERVL 25 601 0 2 844 9625 144 27 6 chr9 34022322 34023972 -90052200 + MERVL_2A-int LTR ERVL 3 1688 -4073 2 844 3278 293 61 18 chr9 34024009 34025184 -90050988 + MERVL_2A-int LTR ERVL 1683 2908 -2759 2 844 9195 191 30 14 chr9 34025172 34027069 -90049103 + MERVL_2A-int LTR ERVL 3688 5614 -147 2 844 270 203 56 42 chr9 34027072 34027144 -90049028 + ORR1A3-int LTR MaLR 552 624 -1339 3 844 509 167 52 22 chr9 34027144 34027279 -90048893 + MERVL_2A-int LTR ERVL 5621 5759 -2 2 844 428 139 101 0 chr9 34027281 34027360 -90048812 + MT2B LTR ERVL 1 87 -446 2 844 360 219 0 0 chr9 34027361 34027443 -90048729 + T-rich Low_complexity Low_complexity 1 82 0 3 844 29634 102 5 1 chr9 34027444 34032830 -90043342 - L1_Mus1 LINE L1 0 6654 1168 3 844 586 245 262 92 chr9 34032833 34032956 -90043216 + MT2B LTR ERVL 278 338 -263 2 844 396 0 0 0 chr9 34032956 34033000 -90043172 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 3 844 586 312 43 82 chr9 34033000 34033235 -90042937 + MT2B LTR ERVL 339 569 -32 2 844 293 83 42 0 chr9 34033255 34033303 -90042869 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 3 844 602 280 92 34 chr9 34033450 34033657 -90042515 + MER20 DNA MER1_type 1 219 0 3 844 343 348 30 0 chr9 34033685 34033820 -90042352 - MIRc SINE MIR -17 251 113 3 844 478 217 9 0 chr9 34035362 34035477 -90040695 - Lx7 LINE L1 -617 7079 6964 3 844 876 194 23 39 chr9 34035486 34035744 -90040428 + RMER17C LTR ERVK 1 254 -156 3 844 1272 185 6 58 chr9 34035713 34036057 -90040115 + RMER17C LTR ERVK 85 410 0 3 844 575 221 24 0 chr9 34036058 34036185 -90039987 - Lx7 LINE L1 -836 6860 6731 3 844 927 158 0 0 chr9 34036314 34036479 -90039693 + (TGGA)n Simple_repeat Simple_repeat 1 165 0 3 844 195 284 151 84 chr9 34038329 34038448 -90037724 - MIR3 SINE MIR -19 189 63 4 844 504 48 0 0 chr9 34038517 34038580 -90037592 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 844 185 263 94 10 chr9 34040110 34040206 -90035966 + MIRb SINE MIR 94 197 -71 4 844 192 250 161 0 chr9 34041545 34041601 -90034571 - L3 LINE CR1 -762 3727 3663 4 844 282 73 0 0 chr9 34041860 34041901 -90034271 + (TAA)n Simple_repeat Simple_repeat 2 42 0 4 844 648 141 0 0 chr9 34042146 34042281 -90033891 + (GTTTG)n Simple_repeat Simple_repeat 2 136 0 4 844 379 344 59 3 chr9 34042751 34042962 -90033210 + MIR SINE MIR 41 268 0 4 844 285 29 0 0 chr9 34043053 34043087 -90033085 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 844 369 0 0 0 chr9 34043087 34043127 -90033045 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 844 356 206 158 53 chr9 34043451 34043584 -90032588 - B4A SINE B4 -117 175 29 4 844 271 353 71 56 chr9 34044153 34044351 -90031821 - MIRc SINE MIR -65 203 3 5 844 603 0 0 0 chr9 34045693 34045760 -90030412 + (GAA)n Simple_repeat Simple_repeat 3 69 0 5 844 376 209 1 62 chr9 34046743 34046832 -90029340 - ID4_ SINE ID -65 87 3 5 844 194 81 0 26 chr9 34048131 34048169 -90028003 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 5 844 583 336 52 26 chr9 34048278 34048550 -90027622 - MER89 LTR ERV1 -4 555 277 5 844 257 203 16 0 chr9 34048611 34048675 -90027497 - MER89 LTR ERV1 -494 65 1 5 844 360 282 43 0 chr9 34048725 34048842 -90027330 - MIR SINE MIR -134 128 7 5 844 308 264 30 23 chr9 34048879 34049011 -90027161 + L1MC LINE L1 5327 5459 -2423 5 844 218 255 126 60 chr9 34049279 34049446 -90026726 - MIR SINE MIR -4 258 81 5 844 537 80 0 0 chr9 34049876 34049951 -90026221 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 844 744 230 7 0 chr9 34050049 34050197 -90025975 + B1_Mur4 SINE Alu 2 150 0 6 844 243 273 10 83 chr9 34050572 34050668 -90025504 + L2b LINE L2 3287 3375 0 6 844 185 375 131 38 chr9 34050851 34051034 -90025138 + MIRm SINE MIR 18 217 -59 6 844 21 0 0 0 chr9 34052789 34052810 -90023362 + AT_rich Low_complexity Low_complexity 1 21 0 6 844 609 279 7 34 chr9 34052864 34053046 -90023126 + B3A SINE B2 48 215 -1 6 844 1198 270 81 20 chr9 34053100 34053493 -90022679 + MTD LTR MaLR 3 419 0 6 844 232 286 42 28 chr9 34053583 34053655 -90022517 + MIRm SINE MIR 200 272 -4 6 844 216 0 0 0 chr9 34053952 34053976 -90022196 + (CTG)n Simple_repeat Simple_repeat 2 25 0 6 844 259 266 0 30 chr9 34054480 34054546 -90021626 - MIRb SINE MIR -90 178 115 6 844 800 261 16 16 chr9 34054835 34055088 -90021084 - L1MA6 LINE L1 -57 6243 5991 6 844 569 259 53 4 chr9 34055606 34055831 -90020341 + L1MC4 LINE L1 7438 7673 -369 6 844 285 135 0 0 chr9 34056724 34056776 -90019396 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 7 844 222 37 0 0 chr9 34057063 34057090 -90019082 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 844 533 352 71 65 chr9 34058290 34058612 -90017560 - ORR1E LTR MaLR 0 359 36 7 844 404 312 22 7 chr9 34058875 34059014 -90017158 + MamRep434 DNA TcMar 5 145 -281 7 844 339 354 27 129 chr9 34059344 34059607 -90016565 + MLT1A0 LTR MaLR 130 365 0 7 844 1984 248 51 26 chr9 34060078 34060800 -90015372 - L1MA9 LINE L1 -1 6311 5572 7 844 1332 209 62 6 chr9 34060819 34061176 -90014996 - Lx9 LINE L1 0 7644 7268 7 844 362 183 0 48 chr9 34061176 34061239 -90014933 - B1_Mur4 SINE Alu -90 60 1 7 844 288 219 0 155 chr9 34061239 34061273 -90014899 - B4 SINE B4 -148 144 63 7 844 283 194 0 0 chr9 34061290 34061352 -90014820 - L1MA9 LINE L1 -846 5294 5233 7 844 1985 192 41 16 chr9 34061351 34061791 -90014381 - Lx9 LINE L1 -397 7247 6797 7 844 297 211 48 6 chr9 34061857 34061966 -90014206 - L1M4 LINE L1 -892 5467 5357 8 844 216 0 0 0 chr9 34061966 34061990 -90014182 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 844 1052 46 76 0 chr9 34062001 34062132 -90014040 - B1_Mus1 SINE Alu -7 141 1 8 844 1359 303 143 32 chr9 34062178 34063109 -90013063 - L1M2 LINE L1 -846 5297 4259 8 844 204 67 0 0 chr9 34063109 34063139 -90013033 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 844 1359 303 143 32 chr9 34063139 34063740 -90012432 - L1M2 LINE L1 -1885 4258 3587 8 844 183 42 0 0 chr9 34063740 34063764 -90012408 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 844 1359 274 95 1 chr9 34063764 34064102 -90012070 - L1M2 LINE L1 -2557 3586 3209 8 844 2019 239 57 36 chr9 34065361 34065909 -90010263 - RCHARR1 DNA MER1_type -415 559 1 8 844 396 339 17 8 chr9 34067224 34067343 -90008829 + MLT1H LTR MaLR 21 140 -409 8 844 724 315 85 35 chr9 34067676 34067995 -90008177 - MLT2C2 LTR ERVL -62 335 1 8 844 3152 69 26 0 chr9 34068041 34068641 -90007531 - ORR1A1-int LTR MaLR -1357 435 1 8 844 2522 67 0 0 chr9 34068641 34068969 -90007203 - ORR1A1 LTR MaLR 0 346 19 8 844 641 62 155 0 chr9 34068969 34069066 -90007106 - MERVL-int LTR ERVL -1244 4241 4130 9 844 1267 32 0 0 chr9 34069066 34069221 -90006951 - MT2C_Mm LTR ERVL -320 155 1 9 844 3109 66 2 5 chr9 34069261 34069658 -90006514 - MTA_Mm LTR MaLR 0 396 1 9 844 588 29 0 0 chr9 34070139 34070209 -90005963 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 844 284 325 113 57 chr9 34071039 34071251 -90004921 + MLT1H LTR MaLR 164 387 -208 8 844 446 226 11 21 chr9 34071709 34071804 -90004368 - B3A SINE B2 -104 94 1 9 844 1110 254 18 45 chr9 34071884 34072218 -90003954 + Lx8 LINE L1 6765 7089 -384 9 844 827 260 33 9 chr9 34072372 34072582 -90003590 + B3 SINE B2 2 216 0 9 844 867 75 13 20 chr9 34072701 34072851 -90003321 + RMER17B LTR ERVK 312 460 -498 9 844 438 216 10 0 chr9 34073132 34073234 -90002938 + RCHARR1 DNA MER1_type 658 760 -214 9 844 660 216 57 7 chr9 34073238 34073378 -90002794 + B1_Mur1 SINE Alu 3 149 0 9 844 384 233 0 19 chr9 34073408 34073513 -90002659 + RCHARR1 DNA MER1_type 752 854 -120 9 844 284 239 28 0 chr9 34073958 34074029 -90002143 - ID4_ SINE ID -9 74 2 1 844 244 291 116 16 chr9 34074034 34074163 -90002009 + MIRb SINE MIR 110 251 -17 1 844 238 301 42 21 chr9 34075977 34076072 -90000100 - MIRc SINE MIR -86 182 86 1 844 526 270 30 73 chr9 34076323 34076487 -89999685 + MER5A1 DNA MER1_type 9 165 -1 1 844 1557 302 95 65 chr9 34077705 34078439 -89997733 + MER21B LTR ERV1 1 756 -107 1 105 679 348 195 19 chr9 34078586 34079652 -89996520 + L2 LINE L2 1460 2713 -706 1 845 180 354 0 0 chr9 34079696 34079761 -89996411 + MIR SINE MIR 174 238 -24 1 845 321 36 34 68 chr9 34079982 34080041 -89996131 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 1 845 851 163 0 17 chr9 34080046 34080104 -89996068 + polypyrimidine Low_complexity Low_complexity 121 178 0 1 845 462 49 0 0 chr9 34080104 34080165 -89996007 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 845 4214 97 9 2 chr9 34080165 34080742 -89995430 - MT2B2 LTR ERVL -3 581 1 1 845 851 163 0 17 chr9 34080742 34080863 -89995309 + polypyrimidine Low_complexity Low_complexity 2 120 0 1 845 438 20 0 0 chr9 34080866 34080917 -89995255 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 845 5281 36 0 0 chr9 34082419 34083037 -89993135 + L1Md_T LINE L1 5963 6580 -2 1 845 249 57 0 0 chr9 34084858 34084893 -89991279 + (T)n Simple_repeat Simple_repeat 1 35 0 1 845 202 337 10 0 chr9 34085303 34085401 -89990771 + (CA)n Simple_repeat Simple_repeat 1 99 0 1 845 292 301 11 21 chr9 34086482 34086577 -89989595 - AmnSINE1 SINE SINE -165 410 317 1 845 383 341 52 66 chr9 34087117 34087403 -89988769 + B4 SINE B4 3 284 -8 1 845 436 252 67 0 chr9 34087865 34087984 -89988188 - RMER20B LTR ERVK -223 404 278 1 845 243 241 19 0 chr9 34088106 34088160 -89988012 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 845 396 0 0 0 chr9 34088349 34088393 -89987779 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 845 183 356 7 64 chr9 34088703 34088844 -89987328 - MIRc SINE MIR -98 170 38 1 845 366 282 45 0 chr9 34088876 34088986 -89987186 + PB1D10 SINE Alu 3 117 0 1 845 244 226 0 46 chr9 34089021 34089086 -89987086 - LTR40a LTR ERVL -75 387 326 1 845 268 386 37 37 chr9 34089124 34089288 -89986884 - LTR40a LTR ERVL -212 307 144 1 845 346 299 72 59 chr9 34091411 34091564 -89984608 + MLT1A LTR MaLR 1 155 -219 1 845 282 278 19 93 chr9 34091649 34091756 -89984416 + MLT1A LTR MaLR 305 403 -5 1 845 1042 169 79 25 chr9 34091872 34092277 -89983895 - RMER6B LTR ERVK 0 461 1 1 845 317 24 0 23 chr9 34093099 34093142 -89983030 + (CCA)n Simple_repeat Simple_repeat 2 43 0 1 845 842 340 113 29 chr9 34093709 34094362 -89981810 - MER21B LTR ERV1 -138 725 18 1 845 414 0 0 0 chr9 34094427 34094473 -89981699 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 845 522 0 0 0 chr9 34094473 34094530 -89981642 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 845 675 348 28 47 chr9 34094724 34095258 -89980914 + Lx8 LINE L1 6924 7447 -26 1 845 3886 85 36 0 chr9 34095306 34095833 -89980339 - L1_Mus1 LINE L1 0 6567 6022 1 845 370 309 106 5 chr9 34096070 34096259 -89979913 - MIR SINE MIR -37 225 18 1 845 460 281 91 17 chr9 34096297 34096529 -89979643 + L1MB3 LINE L1 5814 6062 -121 1 845 462 200 28 28 chr9 34096541 34096649 -89979523 - Lx8 LINE L1 -652 6821 6714 1 845 295 279 0 0 chr9 34096645 34096713 -89979459 + Lx8 LINE L1 6832 6899 -574 1 845 1099 268 55 15 chr9 34096749 34097075 -89979097 + Lx8 LINE L1 7047 7385 -88 1 845 11184 82 2 2 chr9 34097333 34099490 -89976682 - L1VL1 LINE L1 -2977 2906 751 1 845 18937 96 21 1 chr9 34099474 34103065 -89973107 + L1_Mus1 LINE L1 2917 6567 0 1 845 220 295 110 48 chr9 34103651 34103797 -89972375 + L2a LINE L2 2355 2509 -910 1 845 279 0 0 0 chr9 34103865 34103896 -89972276 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 845 1132 294 115 4 chr9 34104072 34104550 -89971622 - Lx8 LINE L1 -2 7471 6941 1 845 5752 85 37 8 chr9 34104548 34105411 -89970761 - Lx3_Mus LINE L1 -535 6474 5587 1 845 3805 102 9 0 chr9 34105424 34105965 -89970207 + Lx3_Mus LINE L1 6464 7009 0 1 845 1404 264 174 11 chr9 34105974 34106613 -89969559 - Lx8 LINE L1 -521 6952 6210 1 845 294 73 0 0 chr9 34106983 34107024 -89969148 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 845 195 129 0 0 chr9 34107340 34107371 -89968801 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 1 845 223 338 0 13 chr9 34107378 34107456 -89968716 + L2a LINE L2 3265 3341 -85 1 845 1888 181 31 20 chr9 34107456 34107811 -89968361 + ORR1B2 LTR MaLR 1 359 -8 1 845 668 252 7 21 chr9 34107974 34108116 -89968056 + ID_B1 SINE B4 82 221 -3 1 845 584 278 36 67 chr9 34108222 34108653 -89967519 + L1ME1 LINE L1 5740 6168 -16 1 845 237 320 7 96 chr9 34109194 34109329 -89966843 - ID_B1 SINE B4 -3 221 99 1 845 23764 123 14 14 chr9 34109392 34115198 -89960974 + L1_Mus3 LINE L1 822 6637 -1 1 845 389 276 108 15 chr9 34115391 34115586 -89960586 + MIR SINE MIR 36 248 -14 1 845 1902 281 103 25 chr9 34115616 34116604 -89959568 - L1MEf LINE L1 -2540 3866 2802 1 845 242 237 39 26 chr9 34116739 34116817 -89959355 - L1MEf LINE L1 -3958 2448 2370 1 845 274 291 100 33 chr9 34116985 34117195 -89958977 - L1MEf LINE L1 -4290 2212 1989 1 845 616 291 211 24 chr9 34117266 34117512 -89958660 - B4A SINE B4 0 292 1 1 845 284 345 90 17 chr9 34117679 34117968 -89958204 - L1MEf LINE L1 -4756 1746 1437 1 845 2346 80 39 60 chr9 34118068 34118402 -89957770 + ORR1A2 LTR MaLR 1 327 0 1 845 262 269 134 42 chr9 34118839 34119056 -89957116 - L1MEf LINE L1 -5102 1294 1057 1 845 229 169 0 33 chr9 34119133 34119194 -89956978 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 845 335 182 58 2 chr9 34119893 34119970 -89956202 - MTB_Mm LTR MaLR 0 419 292 1 845 2158 157 31 23 chr9 34119966 34120356 -89955816 - MTB_Mm LTR MaLR -13 394 2 1 845 919 271 93 16 chr9 34120357 34120668 -89955504 - MTD LTR MaLR -62 357 23 1 845 1774 226 48 2 chr9 34120997 34121392 -89954780 - MTD LTR MaLR -2 417 5 1 845 207 320 19 85 chr9 34122493 34122599 -89953573 + L2b LINE L2 3241 3339 -36 1 845 248 326 37 52 chr9 34122609 34122745 -89953427 + MIR SINE MIR 114 247 -15 1 845 21499 172 18 117 chr9 34122776 34125197 -89950975 + L1_Mus2 LINE L1 385 2779 -3107 1 845 2069 99 35 19 chr9 34125197 34125501 -89950671 + RMER17A LTR ERVK 1 310 -441 1 845 579 35 35 0 chr9 34125501 34125587 -89950585 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 845 2069 189 31 40 chr9 34125587 34125928 -89950244 + RMER17A LTR ERVK 311 750 -1 1 845 21499 145 11 106 chr9 34125928 34129757 -89946415 + L1_Mus2 LINE L1 2780 6566 0 1 845 207 0 0 0 chr9 34129950 34129973 -89946199 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 845 678 279 49 10 chr9 34133315 34133518 -89942654 + B3 SINE B2 2 212 -4 1 845 1410 60 5 0 chr9 34134942 34135126 -89941046 + B2_Mm1t SINE B2 9 193 0 1 845 1194 48 7 20 chr9 34135126 34135274 -89940898 + B1_Mm SINE Alu 1 146 -1 1 845 194 58 36 55 chr9 34135275 34135330 -89940842 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 1 845 276 300 107 8 chr9 34136265 34136386 -89939786 - LTR78 LTR ERV1 -203 1101 969 1 845 1575 72 5 0 chr9 34137495 34137689 -89938483 - B2_Mm2 SINE B2 0 195 1 1 845 1235 300 36 6 chr9 34138599 34138792 -89937380 + MTE2b LTR MaLR 1 200 -179 1 845 504 0 0 0 chr9 34138792 34138848 -89937324 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 845 1235 300 36 6 chr9 34138848 34139013 -89937159 + MTE2b LTR MaLR 201 369 -10 1 845 1022 289 102 9 chr9 34143717 34144042 -89932130 - MTD LTR MaLR -17 402 48 1 845 8030 72 14 3 chr9 34144364 34145622 -89930550 - L1_Mus3 LINE L1 -3 6635 5363 1 845 558 0 0 0 chr9 34145951 34146013 -89930159 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 845 32977 73 8 6 chr9 34146338 34151392 -89924780 + L1Md_F2 LINE L1 527 5586 -297 1 845 8942 28 3 1 chr9 34151392 34152378 -89923794 + L1Md_F2 LINE L1 5587 6574 -8 1 845 259 411 28 0 chr9 34152700 34152807 -89923365 - MER115 DNA Tip100 -320 373 264 1 845 401 286 11 0 chr9 34153204 34153295 -89922877 + RSINE1 SINE B4 31 122 -43 1 845 290 343 40 59 chr9 34154573 34154725 -89921447 + MER5B DNA MER1_type 25 173 -5 1 845 234 0 0 0 chr9 34155074 34155100 -89921072 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 845 40 49 0 0 chr9 34155758 34155819 -89920353 + AT_rich Low_complexity Low_complexity 1 61 0 1 845 270 116 0 0 chr9 34155824 34155867 -89920305 + (TAG)n Simple_repeat Simple_repeat 3 45 0 1 845 825 197 29 0 chr9 34155897 34156034 -89920138 - B1_Mur1 SINE Alu -8 141 1 1 845 261 119 0 0 chr9 34157262 34157304 -89918868 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 845 393 219 69 50 chr9 34157728 34157829 -89918343 + L2a LINE L2 3316 3418 -8 1 845 237 271 16 130 chr9 34158065 34158188 -89917984 + PB1D10 SINE Alu 1 109 -8 1 845 305 302 108 61 chr9 34158280 34158428 -89917744 + HAL1-3A_ME LINE L1 2284 2438 -420 1 845 405 0 0 0 chr9 34160790 34160835 -89915337 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 845 294 111 208 0 chr9 34161899 34161971 -89914201 + Lx5 LINE L1 6964 7050 0 1 845 204 369 0 0 chr9 34164616 34164681 -89911491 + (CACCAT)n Simple_repeat Simple_repeat 1 65 0 1 845 229 278 31 62 chr9 34165430 34165526 -89910646 - MTE2a LTR MaLR -9 370 278 1 845 282 347 8 8 chr9 34166718 34166840 -89909332 + GA-rich Low_complexity Low_complexity 4 125 0 1 845 1879 176 47 6 chr9 34167641 34168000 -89908172 + ORR1D1 LTR MaLR 1 374 0 1 845 405 0 0 0 chr9 34169149 34169194 -89906978 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1 845 1396 326 61 4 chr9 34169194 34169751 -89906421 + Lx8 LINE L1 6884 7472 -1 1 845 21 0 0 0 chr9 34170837 34170858 -89905314 + AT_rich Low_complexity Low_complexity 1 21 0 1 845 297 0 0 0 chr9 34171111 34171144 -89905028 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 845 188 227 220 30 chr9 34171201 34171301 -89904871 + MIR SINE MIR 21 139 -123 1 845 239 263 0 0 chr9 34171389 34171446 -89904726 + LTR33 LTR ERVL 161 217 -298 1 845 351 0 0 0 chr9 34171544 34171583 -89904589 + (TTC)n Simple_repeat Simple_repeat 2 40 0 1 845 600 27 0 0 chr9 34171583 34171657 -89904515 + (CTA)n Simple_repeat Simple_repeat 2 75 0 1 845 232 271 29 0 chr9 34172186 34172256 -89903916 + MER5A1 DNA MER1_type 33 104 -62 2 845 21 0 0 0 chr9 34172429 34172450 -89903722 + AT_rich Low_complexity Low_complexity 1 21 0 2 845 187 319 121 26 chr9 34172622 34172738 -89903434 + MIR SINE MIR 136 262 0 1 845 510 17 0 0 chr9 34172915 34172974 -89903198 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 845 8019 139 62 21 chr9 34173051 34174590 -89901582 - Lx2B LINE L1 -1 6999 5403 2 845 3757 136 5 12 chr9 34174591 34175195 -89900977 - Lx2 LINE L1 -493 6504 5905 2 845 3786 151 19 10 chr9 34175185 34175856 -89900316 - Lx2B LINE L1 -577 5300 4624 2 845 449 66 0 0 chr9 34175867 34175928 -89900244 + RLTR1D LTR ERV1 545 605 0 2 845 2820 136 42 13 chr9 34175928 34176450 -89899722 - MusHAL1 LINE L1 -1919 793 257 2 845 3303 163 44 16 chr9 34176443 34177290 -89898882 - L1VL4 LINE L1 -5290 1045 98 2 845 3771 137 81 11 chr9 34177323 34177988 -89898184 - RMER19A LTR ERVK -18 719 8 2 845 1074 133 0 0 chr9 34178088 34178261 -89897911 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 2 845 306 312 0 0 chr9 34178288 34178365 -89897807 + RMER1C Other Other 1247 1323 -19 2 845 797 120 8 0 chr9 34179821 34179954 -89896218 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 2 845 477 0 0 0 chr9 34181086 34181139 -89895033 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 845 333 0 0 0 chr9 34181139 34181175 -89894997 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 845 468 0 0 0 chr9 34182993 34183045 -89893127 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 845 194 91 30 0 chr9 34184625 34184658 -89891514 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2 845 252 184 0 0 chr9 34185244 34185293 -89890879 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 2 845 207 0 0 0 chr9 34185303 34185326 -89890846 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 845 405 0 0 0 chr9 34185338 34185383 -89890789 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 845 407 274 0 28 chr9 34185406 34185515 -89890657 - RSINE1 SINE B4 -46 119 14 2 845 192 40 0 0 chr9 34190270 34190295 -89885877 + (T)n Simple_repeat Simple_repeat 1 25 0 2 845 555 299 40 11 chr9 34190507 34190683 -89885489 + B3A SINE B2 16 196 -2 2 845 185 265 103 0 chr9 34193821 34193889 -89882283 - MIR SINE MIR -166 96 22 2 845 188 273 0 0 chr9 34195742 34195786 -89880386 - MIRb SINE MIR -10 258 215 2 845 273 57 0 0 chr9 34195787 34195822 -89880350 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 845 288 53 0 0 chr9 34196356 34196394 -89879778 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 845 978 262 82 0 chr9 34196403 34196659 -89879513 - B4A SINE B4 -14 278 2 2 845 289 302 0 0 chr9 34196721 34196807 -89879365 - L1MA8 LINE L1 -283 6008 5923 2 845 336 211 0 0 chr9 34197214 34197290 -89878882 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 845 249 109 0 0 chr9 34197965 34198011 -89878161 + (A)n Simple_repeat Simple_repeat 1 46 0 2 845 735 221 0 0 chr9 34198809 34198954 -89877218 - B3A SINE B2 -50 148 4 2 845 349 271 9 0 chr9 34198988 34199095 -89877077 - L1MA9 LINE L1 -24 6288 6181 2 845 716 241 118 0 chr9 34199258 34199445 -89876727 - B3 SINE B2 -7 209 1 2 845 838 227 34 5 chr9 34199491 34199695 -89876477 - L1MA8 LINE L1 -702 5589 5380 2 845 287 229 14 14 chr9 34202740 34202811 -89873361 - MTEa LTR MaLR -19 360 290 2 845 348 24 0 0 chr9 34203193 34203234 -89872938 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 845 192 125 0 0 chr9 34203284 34203316 -89872856 + (TCTCCC)n Simple_repeat Simple_repeat 6 37 0 2 845 1050 144 0 0 chr9 34203319 34203499 -89872673 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 845 211 315 36 18 chr9 34203981 34204091 -89872081 - MIRc SINE MIR -46 222 111 2 845 666 258 136 13 chr9 34204696 34204924 -89871248 + B4 SINE B4 2 257 -35 2 845 444 37 0 0 chr9 34204943 34204997 -89871175 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 845 313 254 74 33 chr9 34207031 34207153 -89869019 + MIR SINE MIR 23 149 -113 2 845 937 301 77 5 chr9 34208446 34208860 -89867312 - L1MA6 LINE L1 -6 6294 5851 2 845 212 336 33 16 chr9 34209382 34209503 -89866669 + MIRb SINE MIR 21 143 -125 2 846 243 301 43 43 chr9 34211177 34211218 -89864954 + CYRA11_Mm Unknown Y-chromosome 155 198 -419 2 846 4300 37 4 6 chr9 34211218 34211729 -89864443 - L1Md_F3 LINE L1 0 6584 6075 2 846 243 301 43 43 chr9 34211729 34211871 -89864301 + CYRA11_Mm Unknown Y-chromosome 199 338 -279 2 846 872 141 144 17 chr9 34211730 34211903 -89864269 - URR1B DNA MER1_type -28 197 3 2 846 587 254 160 40 chr9 34212076 34212326 -89863846 + B4A SINE B4 1 280 -12 2 846 351 0 0 0 chr9 34212378 34212417 -89863755 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 846 305 316 90 0 chr9 34216423 34216578 -89859594 - L2c LINE L2 -6 3381 3213 2 846 695 189 35 42 chr9 34216881 34217025 -89859147 + B1_Mur1 SINE Alu 7 149 0 2 846 283 341 0 0 chr9 34217114 34217199 -89858973 + ID_B1 SINE B4 88 172 -52 2 846 459 139 0 0 chr9 34217213 34217314 -89858858 + (CTG)n Simple_repeat Simple_repeat 1 101 0 2 846 396 292 78 45 chr9 34217364 34217543 -89858629 + B3A SINE B2 9 193 -5 2 846 468 128 0 0 chr9 34217808 34217886 -89858286 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 846 193 319 42 0 chr9 34218004 34218076 -89858096 + L2c LINE L2 3254 3328 -59 2 846 316 328 8 16 chr9 34218148 34218272 -89857900 + GA-rich Low_complexity Low_complexity 2 124 0 2 846 321 26 0 0 chr9 34219744 34219782 -89856390 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 846 360 0 0 0 chr9 34219782 34219821 -89856351 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 846 379 292 156 55 chr9 34220075 34220332 -89855840 - L1ME4a LINE L1 -39 6085 5803 2 846 297 343 8 110 chr9 34220744 34220980 -89855192 + MLT1K LTR MaLR 210 421 -174 2 846 191 345 0 0 chr9 34222145 34222200 -89853972 - MER5A DNA MER1_type -50 139 85 2 846 300 331 39 16 chr9 34222377 34222506 -89853666 + MIRb SINE MIR 79 210 -58 2 846 243 79 0 0 chr9 34224239 34224277 -89851895 + (GTTTG)n Simple_repeat Simple_repeat 5 42 0 2 846 243 0 0 0 chr9 34224285 34224312 -89851860 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 846 235 291 67 19 chr9 34224752 34224857 -89851315 + ORR1E LTR MaLR 26 135 -224 2 846 180 97 0 0 chr9 34225517 34225548 -89850624 + (C)n Simple_repeat Simple_repeat 1 31 0 2 846 326 302 83 41 chr9 34226311 34226456 -89849716 - L2a LINE L2 0 3426 3276 2 846 186 149 83 21 chr9 34226586 34226634 -89849538 - L2b LINE L2 -331 3044 2994 2 846 344 104 0 15 chr9 34227122 34227190 -89848982 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 2 846 576 0 0 0 chr9 34227313 34227377 -89848795 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 846 291 28 0 0 chr9 34227377 34227412 -89848760 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 846 904 270 69 8 chr9 34227437 34227698 -89848474 - B4A SINE B4 -13 279 3 2 846 270 362 48 24 chr9 34227951 34228118 -89848054 + MER20 DNA MER1_type 2 172 -47 2 846 261 119 0 0 chr9 34228343 34228385 -89847787 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 2 846 311 209 33 44 chr9 34228799 34228979 -89847193 + CT-rich Low_complexity Low_complexity 2 179 0 2 846 379 176 0 16 chr9 34229601 34229728 -89846444 + (CA)n Simple_repeat Simple_repeat 2 126 0 2 846 30 77 0 0 chr9 34232475 34232540 -89843632 + AT_rich Low_complexity Low_complexity 1 65 0 2 846 232 267 135 15 chr9 34232775 34232908 -89843264 - Lx8 LINE L1 -1553 5920 5772 2 846 210 107 35 18 chr9 34232988 34233045 -89843127 + C-rich Low_complexity Low_complexity 3 60 0 2 846 300 283 33 37 chr9 34234913 34235063 -89841109 + MIRb SINE MIR 95 252 -16 2 846 554 0 15 0 chr9 34236589 34236655 -89839517 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 846 1896 231 17 0 chr9 34237860 34238263 -89837909 - MTD LTR MaLR -5 414 5 2 846 377 290 11 0 chr9 34238532 34238625 -89837547 - MER81 DNA AcHobo -20 94 1 2 846 953 254 70 1 chr9 34238960 34239219 -89836953 + MTD LTR MaLR 1 288 -131 2 846 482 296 13 27 chr9 34239433 34239582 -89836590 + Lx6 LINE L1 7129 7275 -185 2 846 415 298 18 0 chr9 34239665 34239779 -89836393 + Lx7 LINE L1 7193 7308 -388 2 846 423 52 0 0 chr9 34239792 34239850 -89836322 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 846 26 30 0 0 chr9 34240024 34240057 -89836115 + AT_rich Low_complexity Low_complexity 1 33 0 2 846 36023 62 2 1 chr9 34240470 34246649 -89829523 - L1Md_F2 LINE L1 0 6582 397 2 846 473 297 46 77 chr9 34246803 34247128 -89829044 - L1MC4a LINE L1 -152 7890 7576 2 846 577 302 40 55 chr9 34247183 34247383 -89828789 - B3A SINE B2 -1 197 1 2 846 244 277 133 8 chr9 34247717 34247837 -89828335 - L1MC4a LINE L1 -799 7243 7109 2 846 246 32 0 0 chr9 34247848 34247879 -89828293 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 846 226 309 0 36 chr9 34248095 34248179 -89827993 - L1MC4a LINE L1 -898 6984 6904 2 846 990 310 140 38 chr9 34248349 34249185 -89826987 - L1MC4a LINE L1 -1669 6213 5293 2 846 4739 98 87 1 chr9 34249250 34249938 -89826234 + L1_Mus4 LINE L1 5873 6619 -17 2 846 284 184 95 84 chr9 34250045 34250140 -89826032 + Lx8 LINE L1 7375 7470 -3 2 846 385 288 70 28 chr9 34250593 34250736 -89825436 - ID_B1 SINE B4 0 224 76 2 846 551 306 0 0 chr9 34250862 34250996 -89825176 + RSINE1 SINE B4 13 146 -19 2 846 208 121 0 0 chr9 34253473 34253506 -89822666 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 846 203 138 0 0 chr9 34253533 34253562 -89822610 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2 846 550 260 0 16 chr9 34253564 34253689 -89822483 - RSINE1 SINE B4 -41 124 2 2 846 490 225 33 88 chr9 34255514 34255729 -89820443 + MIRc SINE MIR 32 234 -34 2 846 209 301 169 22 chr9 34257601 34257737 -89818435 + MIR SINE MIR 37 192 -70 3 846 236 371 142 15 chr9 34258488 34258685 -89817487 + MLT1G LTR MaLR 22 243 -348 3 846 397 370 75 9 chr9 34258761 34259080 -89817092 - L1MC LINE L1 -2089 5793 5454 3 846 211 255 53 105 chr9 34259526 34259640 -89816532 - MER5A DNA MER1_type -39 150 43 3 846 496 225 46 8 chr9 34259675 34259805 -89816367 + MER5A1 DNA MER1_type 30 164 -2 3 846 22 0 0 0 chr9 34260203 34260225 -89815947 + AT_rich Low_complexity Low_complexity 1 22 0 3 846 536 226 45 8 chr9 34260294 34260428 -89815744 - B1F SINE Alu -2 147 9 3 846 415 318 17 17 chr9 34260584 34260763 -89815409 + MLT1B LTR MaLR 1 179 -211 3 846 378 301 191 0 chr9 34260763 34260899 -89815273 + RSINE1 SINE B4 2 163 -2 3 846 680 309 33 28 chr9 34260899 34261169 -89815003 + MLT1B LTR MaLR 162 434 -33 3 846 843 161 256 0 chr9 34261983 34262163 -89814009 - URR1A DNA MER1_type 0 226 1 3 846 214 306 0 16 chr9 34262237 34262300 -89813872 - MER5A DNA MER1_type -80 109 48 3 846 1120 257 34 60 chr9 34262396 34262777 -89813395 + MTEb LTR MaLR 9 379 0 3 846 533 259 62 25 chr9 34263208 34263370 -89812802 - MER5B DNA MER1_type -10 168 1 3 846 223 322 47 47 chr9 34263476 34263626 -89812546 - L2b LINE L2 0 3375 3226 3 846 338 254 16 54 chr9 34266662 34266791 -89809381 - L1ME3 LINE L1 -169 5993 5870 3 846 226 324 35 18 chr9 34267170 34267283 -89808889 + MLT1I LTR MaLR 239 353 -58 3 846 803 288 28 5 chr9 34267467 34267680 -89808492 + ID_B1 SINE B4 3 220 -4 3 846 235 317 51 65 chr9 34267770 34267986 -89808186 + L2 LINE L2 2497 2709 -710 3 846 443 273 117 0 chr9 34268141 34268346 -89807826 + MER113A DNA MER1_type 20 248 -66 3 846 194 105 26 0 chr9 34269537 34269575 -89806597 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 846 209 409 49 0 chr9 34269823 34269965 -89806207 - MIR3 SINE MIR -11 197 49 3 846 182 220 20 20 chr9 34269993 34270044 -89806128 + MIRc SINE MIR 108 158 -110 3 846 627 244 12 29 chr9 34271053 34271226 -89804946 + B4A SINE B4 116 285 -7 3 846 474 18 0 0 chr9 34271226 34271281 -89804891 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 846 266 248 152 36 chr9 34271347 34271485 -89804687 - MLT1A LTR MaLR -6 368 215 3 846 312 347 63 11 chr9 34271600 34272146 -89804026 - L1ME3B LINE L1 -242 5937 5355 3 846 362 305 128 77 chr9 34272651 34273003 -89803169 - MLT1A LTR MaLR -4 370 1 3 846 330 289 66 0 chr9 34273298 34273419 -89802753 + MER3 DNA MER1_type 57 185 -24 3 846 966 255 126 48 chr9 34273739 34274097 -89802075 + MTD LTR MaLR 20 405 -14 3 846 34 24 0 0 chr9 34274880 34274921 -89801251 + AT_rich Low_complexity Low_complexity 1 41 0 3 846 805 228 71 0 chr9 34275064 34275261 -89800911 - L1MA8 LINE L1 0 6291 6081 3 846 617 105 0 75 chr9 34278221 34278407 -89797765 + (CAGAGA)n Simple_repeat Simple_repeat 3 174 0 3 846 189 0 0 0 chr9 34278416 34278437 -89797735 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 846 461 146 11 66 chr9 34278434 34278617 -89797555 + (CAGAGA)n Simple_repeat Simple_repeat 6 178 0 3 846 342 171 15 30 chr9 34278666 34278799 -89797373 + (CAGAGA)n Simple_repeat Simple_repeat 2 132 0 3 846 32 0 0 0 chr9 34279902 34279934 -89796238 + AT_rich Low_complexity Low_complexity 1 32 0 3 846 245 311 25 62 chr9 34281117 34281278 -89794894 + LTR33 LTR ERVL 24 178 -337 3 846 1062 179 87 0 chr9 34281496 34281703 -89794469 - URR1B DNA MER1_type 0 225 1 3 846 606 310 9 32 chr9 34281767 34281987 -89794185 - B3 SINE B2 0 216 2 3 846 803 262 0 0 chr9 34282307 34282471 -89793701 - RSINE1 SINE B4 0 165 2 3 846 668 240 0 0 chr9 34284484 34284609 -89791563 - ID_B1 SINE B4 -14 210 86 3 846 306 0 0 0 chr9 34284743 34284777 -89791395 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 846 442 278 212 61 chr9 34286577 34286889 -89789283 + MLT1A0 LTR MaLR 4 362 -3 3 846 240 291 30 59 chr9 34287137 34287272 -89788900 + L1MC5 LINE L1 7728 7858 -103 3 846 201 235 157 0 chr9 34287291 34287342 -89788830 - MER5A DNA MER1_type 0 189 131 3 846 2153 101 0 3 chr9 34287346 34287664 -89788508 - ORR1A2 LTR MaLR -8 319 3 3 846 348 327 58 102 chr9 34287741 34288105 -89788067 - ORR1E LTR MaLR -11 348 1 3 846 526 249 129 5 chr9 34288964 34289158 -89787014 + Lx9 LINE L1 7426 7643 -1 3 846 304 282 26 84 chr9 34290076 34290231 -89785941 + MLT1A1 LTR MaLR 261 406 -2 3 846 314 301 26 52 chr9 34291179 34291333 -89784839 - AmnSINE1 SINE SINE -4 571 422 3 846 396 0 0 0 chr9 34294722 34294766 -89781406 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 846 443 18 18 0 chr9 34295804 34295860 -89780312 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 846 290 115 19 0 chr9 34296311 34296363 -89779809 + (CTCG)n Simple_repeat Simple_repeat 3 55 0 3 846 222 37 0 0 chr9 34296777 34296804 -89779368 + (CGG)n Simple_repeat Simple_repeat 1 27 0 3 846 186 43 0 0 chr9 34298196 34298219 -89777953 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 846 681 205 32 32 chr9 34298791 34298947 -89777225 - RSINE1 SINE B4 -6 159 4 3 846 381 93 0 0 chr9 34299014 34299068 -89777104 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 846 294 29 0 0 chr9 34299236 34299271 -89776901 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 846 585 0 0 0 chr9 34299271 34299335 -89776837 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 846 227 173 19 0 chr9 34308642 34308694 -89767478 + CT-rich Low_complexity Low_complexity 2 54 0 3 846 261 326 90 42 chr9 34309661 34309805 -89766367 + MER5A DNA MER1_type 1 151 -38 3 846 321 289 93 8 chr9 34309825 34309954 -89766218 + HAL1-3A_ME LINE L1 1981 2120 -738 3 846 401 337 21 11 chr9 34313059 34313245 -89762927 + MER105 DNA DNA 16 203 -1 3 846 229 284 12 0 chr9 34313266 34313347 -89762825 - MLT1D LTR MaLR -9 496 415 3 846 322 336 73 39 chr9 34313345 34313577 -89762595 - MLT1D LTR MaLR -264 241 2 3 846 684 67 0 0 chr9 34315601 34315691 -89760481 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 3 846 306 0 0 0 chr9 34315691 34315724 -89760448 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 846 2258 128 64 19 chr9 34315748 34316123 -89760049 - ORR1B1 LTR MaLR -2 392 1 3 846 285 353 96 45 chr9 34316895 34317187 -89758985 + L2b LINE L2 3035 3343 -44 3 846 1288 233 39 50 chr9 34317302 34317677 -89758495 - MTE2b LTR MaLR 0 370 5 3 846 189 0 0 0 chr9 34319420 34319441 -89756731 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 846 447 313 34 29 chr9 34319470 34319674 -89756498 + L3 LINE CR1 2034 2238 -2251 3 846 259 246 0 0 chr9 34319679 34319736 -89756436 - L2a LINE L2 -1 3425 3369 3 846 414 0 0 0 chr9 34320321 34320367 -89755805 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 846 387 0 0 0 chr9 34320449 34320492 -89755680 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 846 922 134 0 32 chr9 34320676 34320830 -89755342 + B1_Mur4 SINE Alu 1 149 -1 3 846 441 0 0 0 chr9 34321728 34321777 -89754395 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 846 184 346 81 61 chr9 34322534 34322731 -89753441 - MIRb SINE MIR -52 216 16 3 846 198 0 0 0 chr9 34324151 34324173 -89751999 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 846 871 300 4 58 chr9 34324524 34324765 -89751407 + B4 SINE B4 65 292 0 3 846 186 133 0 0 chr9 34327129 34327159 -89749013 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 846 195 42 0 0 chr9 34327325 34327349 -89748823 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 846 493 179 194 47 chr9 34327373 34327488 -89748684 + B1_Mur4 SINE Alu 1 140 -10 3 846 198 0 0 0 chr9 34327488 34327510 -89748662 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 846 493 179 194 47 chr9 34327510 34327523 -89748649 + B1_Mur4 SINE Alu 141 148 -2 3 846 192 323 39 29 chr9 34327640 34327742 -89748430 - MIR SINE MIR -72 136 34 3 846 597 14 0 0 chr9 34327762 34327832 -89748340 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 846 348 24 0 0 chr9 34327832 34327872 -89748300 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 846 280 297 186 14 chr9 34328756 34328896 -89747276 - MER20 DNA MER1_type -55 164 1 3 846 23 33 0 0 chr9 34329478 34329508 -89746664 + AT_rich Low_complexity Low_complexity 1 30 0 3 846 786 176 171 27 chr9 34329508 34329695 -89746477 + B3 SINE B2 1 214 -2 3 846 193 247 154 22 chr9 34329918 34330009 -89746163 - MIR SINE MIR -70 192 90 3 846 423 0 0 0 chr9 34333171 34333218 -89742954 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 846 195 69 0 0 chr9 34333947 34333976 -89742196 + (A)n Simple_repeat Simple_repeat 1 29 0 3 846 270 81 0 0 chr9 34334315 34334352 -89741820 + (TGG)n Simple_repeat Simple_repeat 3 39 0 3 846 369 0 0 0 chr9 34334893 34334934 -89741238 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 846 330 26 0 0 chr9 34334934 34334972 -89741200 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 846 321 280 76 51 chr9 34335000 34335158 -89741014 - MLT2B4 LTR ERVL -45 511 350 3 846 413 275 93 58 chr9 34335220 34335343 -89740829 - MLT2B4 LTR ERVL -342 214 94 3 846 3412 25 5 2 chr9 34335343 34335738 -89740434 + MTA_Mm LTR MaLR 1 396 0 3 846 9167 37 4 4 chr9 34335738 34336836 -89739336 + MTA_Mm-int LTR MaLR 1 1098 0 3 846 3480 28 2 0 chr9 34336836 34337231 -89738941 + MTA_Mm LTR MaLR 1 396 0 3 846 413 275 93 58 chr9 34337231 34337310 -89738862 - MLT2B4 LTR ERVL -463 93 5 3 846 4244 199 130 16 chr9 34337949 34338054 -89738118 - RMER1B Other Other -4 1062 935 3 846 225 0 0 0 chr9 34338054 34338079 -89738093 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 3 846 4244 199 130 16 chr9 34338079 34338925 -89737247 - RMER1B Other Other -132 934 3 3 846 408 20 0 0 chr9 34338961 34339010 -89737162 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 846 25 31 0 0 chr9 34339687 34339719 -89736453 + AT_rich Low_complexity Low_complexity 1 32 0 3 846 260 271 17 0 chr9 34340151 34340210 -89735962 + ID4_ SINE ID 23 82 -1 3 847 554 304 57 46 chr9 34341568 34341851 -89734321 + MER2 DNA MER2_type 1 286 -59 4 847 297 0 0 0 chr9 34343647 34343680 -89732492 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 847 243 0 0 0 chr9 34343809 34343836 -89732336 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 847 270 0 0 0 chr9 34343836 34343865 -89732307 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 847 922 283 10 40 chr9 34343985 34344283 -89731889 + B4A SINE B4 2 290 -2 4 847 388 287 72 131 chr9 34345219 34345592 -89730580 + ORR1E LTR MaLR 9 359 0 4 847 244 259 19 0 chr9 34346058 34346166 -89730006 + GA-rich Low_complexity Low_complexity 4 113 0 4 847 226 296 25 0 chr9 34347462 34347543 -89728629 - MIR SINE MIR 0 262 180 4 847 715 236 142 52 chr9 34349107 34349375 -89726797 - B4A SINE B4 0 292 1 4 847 450 0 0 0 chr9 34349906 34349956 -89726216 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 847 258 296 54 36 chr9 34350357 34350469 -89725703 - MIR SINE MIR -66 142 29 4 847 252 0 0 0 chr9 34350912 34350940 -89725232 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 847 203 184 0 0 chr9 34351083 34351121 -89725051 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 847 222 320 108 45 chr9 34354003 34354160 -89722012 - MIRb SINE MIR -26 242 76 4 847 290 234 7 190 chr9 34354801 34354938 -89721234 - B1F SINE Alu -35 114 3 4 847 549 0 0 0 chr9 34357535 34357596 -89718576 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 847 199 356 0 0 chr9 34357855 34357928 -89718244 + MIRm SINE MIR 91 163 -113 4 847 185 83 28 0 chr9 34358453 34358489 -89717683 + (TATG)n Simple_repeat Simple_repeat 2 38 0 4 847 461 17 0 17 chr9 34358537 34358596 -89717576 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 847 208 268 110 0 chr9 34358709 34358791 -89717381 + MIRc SINE MIR 176 266 -2 4 847 1709 288 95 32 chr9 34359197 34359969 -89716203 - L1MB8 LINE L1 0 6178 5359 4 847 462 293 99 59 chr9 34360017 34360238 -89715934 + B4A SINE B4 3 232 -60 4 847 369 0 0 0 chr9 34360266 34360307 -89715865 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 847 291 54 0 0 chr9 34360350 34360387 -89715785 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 847 249 191 0 0 chr9 34360425 34360472 -89715700 - L1MC3 LINE L1 -3 6330 6284 4 847 1410 269 60 56 chr9 34360503 34361462 -89714710 - L1MC3 LINE L1 -185 6148 5185 4 847 2098 276 63 50 chr9 34361461 34362610 -89713562 - L1M4 LINE L1 -814 5332 4169 4 847 979 142 6 6 chr9 34364485 34364662 -89711510 + GA-rich Low_complexity Low_complexity 2 178 0 4 847 21 0 0 0 chr9 34365733 34365754 -89710418 + AT_rich Low_complexity Low_complexity 1 21 0 4 847 2001 139 92 3 chr9 34368517 34368864 -89707308 - ORR1C1 LTR MaLR 0 378 1 4 847 396 0 0 0 chr9 34371648 34371692 -89704480 + (CCA)n Simple_repeat Simple_repeat 3 46 0 4 847 1205 55 7 0 chr9 34371855 34372001 -89704171 + B1_Mm SINE Alu 1 147 0 4 847 189 0 0 0 chr9 34372007 34372028 -89704144 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 4 847 954 308 98 48 chr9 34372221 34372702 -89703470 - MLT2B2 LTR ERVL -10 505 1 4 847 558 29 0 0 chr9 34372804 34372872 -89703300 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 847 201 211 42 0 chr9 34372950 34373021 -89703151 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 847 318 138 185 0 chr9 34373192 34373257 -89702915 + RMER1C Other Other 1140 1216 -126 4 847 740 138 0 8 chr9 34373258 34373389 -89702783 + (TCC)n Simple_repeat Simple_repeat 3 132 0 4 847 277 203 43 14 chr9 34373429 34373499 -89702673 + RMER1C Other Other 1260 1331 -11 4 847 983 120 6 0 chr9 34373517 34373675 -89702497 + (GAA)n Simple_repeat Simple_repeat 3 161 0 4 847 214 333 74 8 chr9 34374085 34374206 -89701966 + MIRb SINE MIR 67 195 -73 4 847 252 0 0 0 chr9 34374954 34374982 -89701190 + (CCA)n Simple_repeat Simple_repeat 3 30 0 4 847 855 258 99 31 chr9 34376462 34376786 -89699386 - L1MB4 LINE L1 -46 6134 5789 4 847 270 136 29 29 chr9 34377140 34377208 -89698964 + CT-rich Low_complexity Low_complexity 1 68 0 4 847 248 0 0 30 chr9 34377311 34377344 -89698828 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 847 656 143 70 16 chr9 34377344 34377472 -89698700 - B1F2 SINE Alu -13 136 2 4 847 998 204 40 0 chr9 34377947 34378148 -89698024 + B3 SINE B2 1 209 -7 4 847 444 37 0 0 chr9 34378368 34378422 -89697750 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 847 291 297 43 49 chr9 34378924 34379108 -89697064 - MER121 Unknown Unknown -165 247 65 4 847 277 346 19 0 chr9 34382803 34382910 -89693262 + MIRb SINE MIR 125 233 -35 4 847 188 320 0 0 chr9 34384350 34384400 -89691772 - L2b LINE L2 -60 3315 3266 4 847 254 83 0 0 chr9 34384575 34384611 -89691561 + U2 snRNA snRNA 1 36 -152 4 847 418 298 65 0 chr9 34385917 34386041 -89690131 + B4A SINE B4 1 132 -160 4 847 207 0 0 0 chr9 34386095 34386118 -89690054 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 847 211 176 38 63 chr9 34386170 34386249 -89689923 + (CATG)n Simple_repeat Simple_repeat 3 79 0 4 847 391 312 67 28 chr9 34386361 34386539 -89689633 + Tigger5 DNA MER2_type 28 212 -2194 4 847 357 298 9 9 chr9 34386568 34386673 -89689499 + Tigger5 DNA MER2_type 2301 2405 -1 4 847 564 207 39 28 chr9 34390524 34390703 -89685469 - Lx9 LINE L1 -7 7637 7457 4 847 318 343 69 41 chr9 34391388 34391634 -89684538 + ORR1E LTR MaLR 1 253 -106 4 847 243 220 17 17 chr9 34392699 34392759 -89683413 + CT-rich Low_complexity Low_complexity 1 60 0 4 847 1090 50 35 14 chr9 34394490 34394632 -89681540 + B1_Mm SINE Alu 1 145 -2 4 847 243 0 0 0 chr9 34394632 34394659 -89681513 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 847 238 318 55 28 chr9 34394768 34394949 -89681223 - L1M5 LINE L1 -517 5677 5492 4 847 944 291 32 35 chr9 34395831 34396116 -89680056 - B4A SINE B4 -4 288 5 4 847 261 197 137 27 chr9 34398207 34398226 -89677946 + ID4 SINE ID 1 53 -30 4 847 268 196 0 0 chr9 34398226 34398272 -89677900 + tRNA-Ala-GCY_ tRNA tRNA 22 67 -8 4 847 1733 206 26 57 chr9 34398443 34398861 -89677311 + MTD LTR MaLR 14 418 -1 4 847 207 0 0 0 chr9 34400004 34400027 -89676145 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 847 276 30 0 0 chr9 34400848 34400881 -89675291 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 847 560 259 141 5 chr9 34400940 34401138 -89675034 - B4 SINE B4 -54 238 14 4 847 318 319 41 25 chr9 34403385 34403581 -89672591 + L1ME2 LINE L1 5769 5967 -197 4 847 726 99 14 28 chr9 34404176 34404321 -89671851 + (CAGAGA)n Simple_repeat Simple_repeat 2 144 0 4 847 180 0 0 0 chr9 34406563 34406583 -89669589 + (G)n Simple_repeat Simple_repeat 1 20 0 4 847 224 217 0 0 chr9 34407050 34407096 -89669076 + (ATG)n Simple_repeat Simple_repeat 2 47 0 4 847 725 243 0 0 chr9 34409111 34409247 -89666925 - B1_Mus1 SINE Alu -12 136 1 4 847 203 324 48 22 chr9 34409250 34409341 -89666831 - L2b LINE L2 -247 3140 3047 4 847 513 0 0 0 chr9 34409508 34409565 -89666607 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 847 477 0 0 0 chr9 34409565 34409617 -89666555 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 847 216 0 0 0 chr9 34409865 34409889 -89666283 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 847 351 0 0 0 chr9 34413981 34414020 -89662152 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 847 203 0 37 0 chr9 34414271 34414298 -89661874 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 847 342 0 0 0 chr9 34416801 34416839 -89659333 + (A)n Simple_repeat Simple_repeat 1 38 0 4 847 307 317 0 0 chr9 34418209 34418291 -89657881 + ID4_ SINE ID 2 83 0 4 847 407 136 20 20 chr9 34418304 34418402 -89657770 + GA-rich Low_complexity Low_complexity 4 101 0 4 847 340 333 171 18 chr9 34422033 34422308 -89653864 - LTR16C LTR ERVL -16 473 157 4 847 825 305 33 27 chr9 34422400 34422730 -89653442 + MLT1A0 LTR MaLR 8 339 -26 4 847 180 284 45 81 chr9 34423508 34423619 -89652553 - L2c LINE L2 -41 3346 3240 4 847 237 139 0 0 chr9 34423670 34423713 -89652459 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 847 303 93 0 0 chr9 34423729 34423772 -89652400 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 847 355 229 0 14 chr9 34423824 34423895 -89652277 - ID4_ SINE ID -11 72 3 4 847 223 288 0 0 chr9 34424891 34424950 -89651222 + A-rich Low_complexity Low_complexity 1 59 0 4 847 279 0 0 0 chr9 34425002 34425033 -89651139 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 847 321 254 14 0 chr9 34425165 34425236 -89650936 - RSINE1 SINE B4 -87 78 7 4 847 302 111 48 24 chr9 34426090 34426173 -89649999 + (CAGAGA)n Simple_repeat Simple_repeat 4 88 0 4 847 513 141 0 0 chr9 34426657 34426742 -89649430 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 847 246 244 0 0 chr9 34426750 34426832 -89649340 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 847 189 0 0 0 chr9 34428539 34428560 -89647612 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 4 847 219 227 0 0 chr9 34428595 34428639 -89647533 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 847 340 338 101 81 chr9 34428654 34428912 -89647260 + LTR33A LTR ERVL 1 263 -257 4 847 992 255 65 76 chr9 34429686 34430042 -89646130 - MTEa LTR MaLR -23 356 5 4 847 189 0 0 0 chr9 34430761 34430782 -89645390 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 847 540 0 0 0 chr9 34430783 34430843 -89645329 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 847 336 259 78 45 chr9 34431699 34431853 -89644319 - LTR16A1 LTR ERVL -72 384 226 4 847 332 269 144 44 chr9 34432249 34432478 -89643694 + L1ME4a LINE L1 5856 6107 -17 4 847 1800 246 78 25 chr9 34433568 34433808 -89642364 + L1MB3 LINE L1 5512 5768 -415 5 847 336 48 0 0 chr9 34433808 34433850 -89642322 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 5 847 1800 254 82 25 chr9 34433850 34434197 -89641975 + L1MB3 LINE L1 5769 6142 -29 5 847 757 226 24 19 chr9 34434512 34434707 -89641465 + B3A SINE B2 6 194 -1 5 847 243 0 0 0 chr9 34435431 34435458 -89640714 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 847 423 106 0 0 chr9 34436117 34436183 -89639989 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 847 260 336 0 101 chr9 34436273 34436392 -89639780 - MIRc SINE MIR -145 123 17 5 847 209 329 35 0 chr9 34437944 34438029 -89638143 + MIRb SINE MIR 115 202 -66 5 847 719 278 73 0 chr9 34440040 34440245 -89635927 + ID_B1 SINE B4 4 223 -1 5 847 509 295 59 59 chr9 34440908 34441146 -89635026 - Tigger7 DNA MER2_type 0 2491 2254 5 847 188 312 47 0 chr9 34441305 34441369 -89634803 - MIRm SINE MIR -38 238 172 5 847 180 125 0 0 chr9 34441570 34441602 -89634570 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 5 847 356 349 17 107 chr9 34441962 34442196 -89633976 + MTD LTR MaLR 1 213 -206 5 847 618 215 156 8 chr9 34442291 34442467 -89633705 + MTD LTR MaLR 219 405 -14 5 847 198 0 0 0 chr9 34443867 34443889 -89632283 + (T)n Simple_repeat Simple_repeat 1 22 0 5 847 330 127 0 0 chr9 34444199 34444254 -89631918 - HAL1-3A_ME LINE L1 -829 2029 1975 5 847 21 0 0 0 chr9 34444877 34444898 -89631274 + AT_rich Low_complexity Low_complexity 1 21 0 5 847 213 281 83 50 chr9 34445628 34445748 -89630424 - MIRb SINE MIR -92 176 53 5 847 194 0 0 37 chr9 34446131 34446158 -89630014 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 5 847 531 337 97 7 chr9 34446654 34446932 -89629240 - MER77 LTR ERVL -9 598 296 5 847 1223 156 9 27 chr9 34447086 34447310 -89628862 - URR1B DNA MER1_type 0 225 6 5 847 539 246 76 0 chr9 34447806 34447924 -89628248 + Lx8 LINE L1 7154 7280 -193 5 847 1946 156 32 93 chr9 34447980 34448419 -89627753 - RLTR41 LTR ERV1 -34 412 1 5 847 244 48 48 0 chr9 34448514 34448556 -89627616 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 847 333 244 23 39 chr9 34448558 34448686 -89627486 + Lx8 LINE L1 7346 7471 -2 5 847 503 260 0 8 chr9 34449618 34449742 -89626430 + B1F SINE Alu 27 149 0 5 847 435 83 0 0 chr9 34449752 34449812 -89626360 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 847 700 279 92 92 chr9 34450153 34450445 -89625727 + B4A SINE B4 1 292 0 5 847 505 339 26 21 chr9 34452389 34452582 -89623590 - RMER30 DNA MER1_type -1 201 8 5 847 864 283 20 24 chr9 34452583 34452876 -89623296 + B4A SINE B4 1 292 0 5 847 482 58 29 0 chr9 34452876 34452945 -89623227 + (CACG)n Simple_repeat Simple_repeat 1 71 0 5 847 217 190 63 0 chr9 34453021 34453100 -89623072 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 5 847 22 0 0 0 chr9 34453405 34453427 -89622745 + GC_rich Low_complexity Low_complexity 1 22 0 5 847 209 204 36 18 chr9 34453634 34453689 -89622483 + GA-rich Low_complexity Low_complexity 4 59 0 5 847 381 205 246 45 chr9 34455543 34455722 -89620450 - B3 SINE B2 -1 215 1 5 847 405 356 125 16 chr9 34456019 34456322 -89619850 + LTR16E1 LTR ERVL 137 472 -66 5 847 399 319 86 40 chr9 34457034 34457256 -89618916 - MIRb SINE MIR -21 247 16 5 847 193 272 93 58 chr9 34458422 34458508 -89617664 - L2b LINE L2 0 3375 3287 5 847 560 303 48 10 chr9 34459038 34459328 -89616844 + Charlie4a DNA MER1_type 143 443 -65 5 847 719 271 39 63 chr9 34459352 34459636 -89616536 - B4 SINE B4 -14 278 2 5 847 824 135 0 0 chr9 34460980 34461113 -89615059 - URR1B DNA MER1_type 0 225 93 5 847 180 0 0 0 chr9 34461116 34461136 -89615036 + (A)n Simple_repeat Simple_repeat 1 20 0 5 847 260 381 80 8 chr9 34461560 34461798 -89614374 + MLT1H1 LTR MaLR 295 549 -6 5 847 462 18 0 0 chr9 34462463 34462518 -89613654 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 847 4737 189 15 61 chr9 34462739 34463685 -89612487 + Lx7 LINE L1 6073 6974 -722 5 847 625 336 52 28 chr9 34463705 34464069 -89612103 - MLT1D LTR MaLR 0 505 133 5 847 578 147 31 0 chr9 34464431 34464560 -89611612 + GA-rich Low_complexity Low_complexity 2 134 0 5 847 249 298 120 28 chr9 34465366 34465544 -89610628 - MIR SINE MIR -71 191 2 5 847 189 245 41 0 chr9 34467897 34467946 -89608226 - MIRb SINE MIR 0 268 218 5 847 240 59 0 0 chr9 34468249 34468283 -89607889 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 847 746 216 48 16 chr9 34468283 34468471 -89607701 - B3 SINE B2 -22 194 1 5 847 333 47 0 0 chr9 34469197 34469240 -89606932 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 847 351 0 0 0 chr9 34469814 34469853 -89606319 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 847 1176 109 0 4 chr9 34470017 34470266 -89605906 + (CA)n Simple_repeat Simple_repeat 1 248 0 5 848 222 310 0 0 chr9 34475804 34475862 -89600310 + CT-rich Low_complexity Low_complexity 2 59 0 5 848 273 98 0 0 chr9 34477586 34477627 -89598545 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 5 848 242 267 13 0 chr9 34477677 34477752 -89598420 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 848 629 286 5 65 chr9 34482157 34482331 -89593841 + B3A SINE B2 1 172 -44 5 848 405 0 0 0 chr9 34482331 34482376 -89593796 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 848 609 286 5 65 chr9 34482376 34482418 -89593754 + B3 SINE B2 173 204 -12 5 848 396 40 0 0 chr9 34483054 34483104 -89593068 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 848 794 248 150 42 chr9 34483121 34483361 -89592811 - B4A SINE B4 -25 267 2 5 848 2134 270 36 59 chr9 34483870 34484664 -89591508 - L1MC2 LINE L1 -9 6335 5560 5 848 357 303 0 27 chr9 34484886 34484998 -89591174 + RSINE1 SINE B4 42 150 -15 5 848 225 0 0 0 chr9 34485002 34485027 -89591145 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 848 256 298 102 6 chr9 34485838 34486023 -89590149 - L1ME3B LINE L1 -217 5947 5736 5 848 318 355 30 56 chr9 34486027 34486260 -89589912 + ORR1D2 LTR MaLR 6 232 -138 5 848 297 326 54 27 chr9 34486533 34486681 -89589491 + MIR SINE MIR 8 159 -103 5 848 443 113 17 25 chr9 34486880 34486998 -89589174 + T-rich Low_complexity Low_complexity 4 120 0 5 848 769 226 6 19 chr9 34487940 34488102 -89588070 + RSINE1 SINE B4 4 163 -2 5 848 210 37 0 0 chr9 34488139 34488166 -89588006 + (TATG)n Simple_repeat Simple_repeat 1 27 0 5 848 965 239 9 32 chr9 34488178 34488394 -89587778 + B3 SINE B2 3 213 -3 5 848 199 167 71 0 chr9 34488814 34488856 -89587316 - MIRm SINE MIR -21 255 211 5 848 235 325 0 12 chr9 34489922 34490003 -89586169 + MIR SINE MIR 95 174 -88 5 848 336 277 153 9 chr9 34491483 34491819 -89584353 - L1ME4a LINE L1 -4 6120 5736 5 848 451 208 15 0 chr9 34492753 34492883 -89583289 + CT-rich Low_complexity Low_complexity 2 133 0 5 848 554 223 101 29 chr9 34492894 34493102 -89583070 - L1MC3 LINE L1 -1 7784 7562 5 848 522 314 58 13 chr9 34493136 34493362 -89582810 - L1MC3 LINE L1 -512 7273 7038 5 848 693 225 0 7 chr9 34493411 34493550 -89582622 - B3A SINE B2 -59 139 2 5 848 24 0 0 0 chr9 34493559 34493583 -89582589 + AT_rich Low_complexity Low_complexity 1 24 0 5 848 255 267 89 0 chr9 34493649 34493750 -89582422 - L1MC3 LINE L1 -807 6978 6869 5 848 788 318 70 49 chr9 34493780 34494226 -89581946 + MLT1C LTR MaLR 4 458 -9 5 848 855 294 113 13 chr9 34494263 34494652 -89581520 - L1MC3 LINE L1 -944 6841 6414 5 848 539 242 137 47 chr9 34495703 34495959 -89580213 + L1ME4a LINE L1 5841 6119 -5 5 848 200 247 25 88 chr9 34495961 34496041 -89580131 - MIR3 SINE MIR -23 185 111 5 848 198 291 77 100 chr9 34497592 34497722 -89578450 - L2c LINE L2 -18 3369 3243 5 848 306 0 0 0 chr9 34498371 34498405 -89577767 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 848 673 333 26 17 chr9 34498512 34498857 -89577315 + L1ME4a LINE L1 5517 5864 -260 5 848 317 257 13 13 chr9 34498877 34498952 -89577220 - MamRep1879 DNA hAT? -83 133 59 5 848 1090 103 6 11 chr9 34499550 34499727 -89576445 + (GGGAGA)n Simple_repeat Simple_repeat 5 180 0 5 848 212 77 0 25 chr9 34499936 34499976 -89576196 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 848 207 196 0 0 chr9 34500001 34500047 -89576125 + T-rich Low_complexity Low_complexity 1 46 0 1 848 249 318 23 12 chr9 34500429 34500515 -89575657 - MLT1A LTR MaLR -244 130 44 2 848 610 250 106 30 chr9 34500617 34500815 -89575357 - MER20 DNA MER1_type -1 218 6 3 848 228 222 79 32 chr9 34500823 34500906 -89575266 + MIR SINE MIR 74 160 -48 4 848 307 277 38 47 chr9 34504810 34504916 -89571256 + MTEa LTR MaLR 275 379 0 5 848 446 304 120 9 chr9 34504916 34505238 -89570934 - MLT2C1 LTR ERVL -35 362 1 6 848 380 379 21 7 chr9 34505827 34505968 -89570204 - ORR1E LTR MaLR -216 143 1 7 848 642 268 38 0 chr9 34506073 34506230 -89569942 + B3A SINE B2 3 165 -33 8 848 440 265 26 70 chr9 34506840 34507025 -89569147 + MIRb SINE MIR 53 244 -24 9 848 480 344 37 16 chr9 34507847 34508036 -89568136 + MER44B DNA MER2_type 55 247 -303 1 848 293 370 67 0 chr9 34508138 34508257 -89567915 - MIRb SINE MIR -108 160 34 1 848 424 299 22 67 chr9 34509186 34509365 -89566807 + L2b LINE L2 2974 3144 -231 1 848 312 229 101 37 chr9 34510340 34510449 -89565723 + MTEb LTR MaLR 264 379 0 1 848 270 183 100 0 chr9 34513581 34513641 -89562531 - 5S rRNA rRNA -48 73 8 1 848 216 258 45 0 chr9 34513582 34513648 -89562524 - AmnSINE1 SINE SINE -506 69 1 1 848 502 314 75 29 chr9 34515501 34515675 -89560497 - MLT1J LTR MaLR -315 197 16 1 848 243 269 30 0 chr9 34515675 34515742 -89560430 + CT-rich Low_complexity Low_complexity 4 72 0 1 848 229 224 104 13 chr9 34515757 34515834 -89560338 - PB1 SINE Alu -2 125 42 1 848 246 329 70 86 chr9 34517871 34518057 -89558115 - MTEb LTR MaLR 0 379 197 1 848 252 0 0 0 chr9 34518838 34518866 -89557306 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 2 848 231 88 0 0 chr9 34518977 34519011 -89557161 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2 848 310 313 68 24 chr9 34519941 34520088 -89556084 - MIR3 SINE MIR -37 171 17 2 848 189 214 0 0 chr9 34520493 34520535 -89555637 + T-rich Low_complexity Low_complexity 1 42 0 2 848 209 193 56 11 chr9 34522092 34522181 -89553991 + CT-rich Low_complexity Low_complexity 3 95 0 2 848 279 0 0 0 chr9 34522444 34522475 -89553697 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 2 848 22 0 0 0 chr9 34522919 34522941 -89553231 + AT_rich Low_complexity Low_complexity 1 22 0 2 848 21 57 0 0 chr9 34523840 34523875 -89552297 + AT_rich Low_complexity Low_complexity 1 35 0 2 848 251 54 27 0 chr9 34524741 34524778 -89551394 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 2 848 2816 202 83 17 chr9 34524782 34524915 -89551257 - Lx9 LINE L1 0 7644 7481 2 848 910 121 0 13 chr9 34524915 34525074 -89551098 + (TATATG)n Simple_repeat Simple_repeat 2 158 0 3 848 2816 202 83 17 chr9 34525074 34525593 -89550579 - Lx9 LINE L1 -164 7480 6949 2 848 252 0 0 0 chr9 34525650 34525678 -89550494 + (A)n Simple_repeat Simple_repeat 1 28 0 3 848 273 347 66 13 chr9 34526666 34526818 -89549354 - MIR SINE MIR -102 160 1 3 848 468 48 0 0 chr9 34526853 34526916 -89549256 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 848 346 326 92 44 chr9 34527222 34527450 -89548722 + L3b LINE CR1 93 331 -151 3 848 371 300 74 66 chr9 34528401 34528658 -89547514 - MIRb SINE MIR -2 266 8 3 848 206 275 73 52 chr9 34531177 34531273 -89544899 - MIRb SINE MIR -18 250 153 3 848 3466 30 5 0 chr9 34532195 34532589 -89543583 + MTA_Mm LTR MaLR 1 396 0 3 848 899 264 18 48 chr9 34532811 34533038 -89543134 + B4 SINE B4 50 269 -23 3 848 450 0 0 0 chr9 34533038 34533088 -89543084 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 848 290 81 156 31 chr9 34534608 34534672 -89541500 + MER44D DNA MER2_type 48 119 -586 4 848 330 255 49 0 chr9 34534673 34534775 -89541397 + MER44D DNA MER2_type 496 601 -104 4 848 468 0 0 0 chr9 34535199 34535251 -89540921 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 848 278 287 110 25 chr9 34535743 34535861 -89540311 - MIR SINE MIR -85 177 50 4 848 360 305 28 78 chr9 34536041 34536183 -89539989 - B4A SINE B4 -156 136 2 4 848 494 54 14 0 chr9 34536350 34536424 -89539748 + (TTTTG)n Simple_repeat Simple_repeat 2 76 0 4 848 298 382 24 0 chr9 34536851 34536974 -89539198 + MIRc SINE MIR 11 136 -132 4 848 180 234 58 72 chr9 34536965 34537034 -89539138 + L3 LINE CR1 4415 4482 -7 4 848 321 187 26 13 chr9 34537261 34537337 -89538835 + MER121 Unknown Unknown 147 223 -189 4 848 955 269 65 29 chr9 34538191 34538470 -89537702 - B4 SINE B4 -1 291 3 4 848 414 0 0 0 chr9 34538586 34538632 -89537540 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 848 364 208 13 25 chr9 34538965 34539037 -89537135 + ID2 SINE ID 5 76 -7 5 848 252 86 0 0 chr9 34539037 34539072 -89537100 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 5 848 335 351 28 100 chr9 34540631 34540881 -89535291 + MIRb SINE MIR 36 267 -1 5 848 229 228 114 38 chr9 34541109 34541214 -89534958 + Tigger11a DNA MER2_type 156 268 -467 5 848 269 312 139 25 chr9 34541597 34541755 -89534417 - MER2 DNA MER2_type -42 303 128 5 848 320 308 0 0 chr9 34541783 34541848 -89534324 - MER2 DNA MER2_type -277 68 4 5 848 1734 215 13 29 chr9 34543385 34543759 -89532413 + ORR1D2 LTR MaLR 1 368 -2 5 848 301 313 0 0 chr9 34544023 34544090 -89532082 + B1F SINE Alu 32 98 -51 5 848 437 217 36 0 chr9 34544144 34544227 -89531945 + PB1D10 SINE Alu 5 90 -27 5 848 287 258 0 0 chr9 34544267 34544333 -89531839 - MER5A1 DNA MER1_type 0 166 101 5 848 3826 50 0 0 chr9 34545227 34545684 -89530488 - L1_Mus1 LINE L1 -2 6565 6109 5 848 781 291 91 67 chr9 34545705 34546121 -89530051 - RLTR23 LTR ERV1 0 430 5 6 848 189 208 18 54 chr9 34547018 34547074 -89529098 + L2c LINE L2 3099 3152 -235 6 848 230 316 62 12 chr9 34549277 34549357 -89526815 - BC1_Mm scRNA scRNA -68 84 1 6 848 293 208 112 20 chr9 34550671 34550769 -89525403 - MTEa LTR MaLR 0 379 273 6 848 307 310 43 26 chr9 34551045 34551161 -89525011 - MTEb LTR MaLR 0 379 262 6 848 181 333 15 0 chr9 34554007 34554073 -89522099 + MIRb SINE MIR 104 170 -98 6 848 195 254 48 48 chr9 34554068 34554130 -89522042 + L2a LINE L2 3360 3421 -5 6 848 223 208 56 19 chr9 34555116 34555170 -89521002 + polypyrimidine Low_complexity Low_complexity 4 59 0 6 848 1179 139 122 15 chr9 34555957 34556161 -89520011 - URR1A DNA MER1_type 0 226 1 6 848 683 278 22 36 chr9 34556375 34556599 -89519573 - MER58A DNA MER1_type 0 224 4 6 848 181 269 24 82 chr9 34556713 34556798 -89519374 - L2a LINE L2 -360 3066 2987 7 848 322 365 54 0 chr9 34557300 34557448 -89518724 - MIRb SINE MIR -23 245 90 7 848 252 0 0 0 chr9 34558007 34558035 -89518137 + (TC)n Simple_repeat Simple_repeat 2 29 0 7 848 351 0 0 0 chr9 34558035 34558073 -89518099 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 848 326 347 22 48 chr9 34559447 34559677 -89516495 + ID_B1 SINE B4 1 224 0 7 848 197 200 0 0 chr9 34559779 34559814 -89516358 - MER5A DNA MER1_type -72 117 83 7 848 243 0 0 0 chr9 34560832 34560859 -89515313 + (A)n Simple_repeat Simple_repeat 1 27 0 7 848 192 40 0 0 chr9 34561162 34561187 -89514985 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 848 320 271 30 96 chr9 34561187 34561306 -89514866 - RMER12 LTR ERVK -474 848 736 7 848 351 0 0 0 chr9 34561306 34561345 -89514827 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 848 320 271 30 96 chr9 34561345 34561383 -89514789 - RMER12 LTR ERVK -587 735 701 7 848 252 0 0 0 chr9 34561383 34561411 -89514761 + (TTTTTG)n Simple_repeat Simple_repeat 6 33 0 8 848 1174 82 0 7 chr9 34561411 34561559 -89514613 - B1_Mm SINE Alu 0 147 1 8 848 232 247 0 47 chr9 34561857 34561942 -89514230 + CT-rich Low_complexity Low_complexity 2 82 0 8 848 239 351 74 39 chr9 34563446 34563646 -89512526 + L2c LINE L2 2975 3189 -198 8 848 411 21 0 0 chr9 34563646 34563694 -89512478 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 848 239 351 74 39 chr9 34563694 34563804 -89512368 + L2c LINE L2 3190 3296 -91 8 848 252 0 0 0 chr9 34565810 34565838 -89510334 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 848 702 0 0 0 chr9 34566874 34566952 -89509220 + (GGAA)n Simple_repeat Simple_repeat 2 79 0 8 848 229 364 38 50 chr9 34567195 34567354 -89508818 + MIRb SINE MIR 73 229 -39 8 848 458 269 29 0 chr9 34568710 34568814 -89507358 + PB1D7 SINE Alu 9 115 -5 8 848 247 376 69 46 chr9 34569992 34570123 -89506049 - MLT1G1 LTR MaLR -305 274 141 8 848 346 286 8 23 chr9 34570212 34570341 -89505831 + (TA)n Simple_repeat Simple_repeat 1 127 0 9 848 204 182 0 0 chr9 34570447 34570491 -89505681 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 848 559 309 46 0 chr9 34570599 34570774 -89505398 + Tigger5 DNA MER2_type 11 193 -2213 9 848 761 228 0 0 chr9 34571119 34571255 -89504917 - B1_Mur2 SINE Alu -8 141 6 9 848 318 285 6 149 chr9 34571145 34571306 -89504866 - MT2B LTR ERVL -332 269 132 9 848 381 149 0 0 chr9 34572111 34572178 -89503994 + (ATGGTG)n Simple_repeat Simple_repeat 5 71 0 9 848 588 179 0 0 chr9 34572516 34572672 -89503500 + GA-rich Low_complexity Low_complexity 1 156 0 9 848 201 136 45 0 chr9 34572675 34572719 -89503453 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 9 848 734 272 37 53 chr9 34573308 34573498 -89502674 + B4 SINE B4 106 292 0 9 848 381 58 0 0 chr9 34573533 34573585 -89502587 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 848 432 272 0 21 chr9 34573608 34573702 -89502470 - PB1D10 SINE Alu -16 101 10 1 848 198 143 0 0 chr9 34574604 34574639 -89501533 + (CCCCCT)n Simple_repeat Simple_repeat 5 39 0 1 848 342 235 305 12 chr9 34575401 34575565 -89500607 + B3 SINE B2 4 215 -1 1 848 366 344 101 72 chr9 34575900 34576248 -89499924 - L2c LINE L2 -18 3369 3012 1 848 1312 158 18 5 chr9 34577344 34577567 -89498605 + URR1A DNA MER1_type 1 226 0 1 848 675 285 146 56 chr9 34577679 34577947 -89498225 + B4 SINE B4 1 292 0 1 848 440 48 16 0 chr9 34577954 34578017 -89498155 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 848 414 210 72 48 chr9 34578038 34578163 -89498009 + MIRb SINE MIR 103 230 -38 1 848 232 293 17 0 chr9 34578243 34578301 -89497871 + Charlie5 DNA MER1_type 1 59 -2565 1 848 457 292 62 0 chr9 34578375 34578536 -89497636 + Charlie5 DNA MER1_type 2450 2620 -4 1 848 186 43 0 0 chr9 34580179 34580202 -89495970 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 848 347 240 229 27 chr9 34580231 34580454 -89495718 - L1MA5 LINE L1 -9 6291 6021 1 848 241 313 34 91 chr9 34580711 34580889 -89495283 - MIRb SINE MIR -75 193 22 1 848 633 285 86 99 chr9 34581052 34581414 -89494758 - MLT1A LTR MaLR -17 357 1 1 848 1070 95 7 0 chr9 34582817 34582964 -89493208 + B1_Mus1 SINE Alu 1 148 0 1 848 353 359 26 0 chr9 34585403 34585520 -89490652 - MLT1H LTR MaLR -306 243 124 1 848 22 0 0 0 chr9 34586161 34586183 -89489989 + AT_rich Low_complexity Low_complexity 1 22 0 1 848 818 160 27 27 chr9 34586298 34586446 -89489726 + B1_Mur1 SINE Alu 2 149 0 1 848 944 294 130 31 chr9 34586624 34587343 -89488829 - L1MB2 LINE L1 -117 6054 5264 1 848 495 0 0 0 chr9 34587516 34587571 -89488601 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 848 286 23 0 44 chr9 34587571 34587615 -89488557 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 848 735 331 70 11 chr9 34587624 34587896 -89488276 - B4A SINE B4 -4 288 1 1 848 402 317 30 0 chr9 34587898 34587999 -89488173 - PB1D9 SINE Alu -15 105 2 1 848 1138 292 68 28 chr9 34588027 34588617 -89487555 - L1ME3B LINE L1 -290 5950 5335 1 848 440 278 8 25 chr9 34588915 34589033 -89487139 - PB1D10 SINE Alu -1 116 1 1 848 869 234 27 16 chr9 34589230 34589417 -89486755 + B3A SINE B2 10 198 0 1 848 761 179 56 28 chr9 34589425 34589569 -89486603 + B1_Mur4 SINE Alu 3 150 0 1 848 31 0 0 0 chr9 34589733 34589764 -89486408 + AT_rich Low_complexity Low_complexity 1 31 0 1 848 231 36 0 0 chr9 34590389 34590417 -89485755 + (CAGG)n Simple_repeat Simple_repeat 2 29 0 1 848 279 54 0 0 chr9 34590654 34590691 -89485481 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 848 22 0 0 0 chr9 34591761 34591783 -89484389 + AT_rich Low_complexity Low_complexity 1 22 0 1 848 233 259 347 19 chr9 34592775 34592991 -89483181 + RMER12 LTR ERVK 769 1055 -267 1 848 227 308 43 11 chr9 34595389 34595481 -89480691 + Charlie15a DNA MER1_type 116 210 -14 1 848 429 20 0 0 chr9 34595624 34595674 -89480498 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 848 477 0 0 0 chr9 34596184 34596237 -89479935 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 848 2208 220 257 42 chr9 34596397 34597205 -89478967 - Lx8 LINE L1 -359 7114 6133 1 848 297 0 0 0 chr9 34597209 34597242 -89478930 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 848 249 295 34 43 chr9 34597624 34597741 -89478431 - MIRb SINE MIR -82 186 71 1 848 181 275 0 0 chr9 34598314 34598354 -89477818 - L2c LINE L2 -10 3377 3338 1 848 252 59 0 0 chr9 34599264 34599298 -89476874 + (CTTTG)n Simple_repeat Simple_repeat 1 34 0 1 848 291 294 118 65 chr9 34600446 34600560 -89475612 + MIRc SINE MIR 1 127 -141 1 848 264 59 0 0 chr9 34600560 34600594 -89475578 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 848 291 294 118 65 chr9 34600594 34600632 -89475540 + MIRc SINE MIR 128 161 -107 1 848 362 341 59 27 chr9 34600649 34600836 -89475336 - MLT1L LTR MaLR -17 593 401 1 848 282 73 0 0 chr9 34601148 34601189 -89474983 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 848 324 0 0 0 chr9 34601189 34601225 -89474947 + (TTG)n Simple_repeat Simple_repeat 3 38 0 1 848 303 192 67 57 chr9 34602040 34602145 -89474027 + MIR SINE MIR 43 148 -60 1 848 423 0 0 0 chr9 34602211 34602258 -89473914 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 848 31 0 0 0 chr9 34602801 34602832 -89473340 + AT_rich Low_complexity Low_complexity 1 31 0 1 13 321 320 192 31 chr9 34602928 34603157 -89473015 + L2 LINE L2 2690 2955 -464 1 849 1069 263 132 9 chr9 34604523 34604842 -89471330 + MLT1A0 LTR MaLR 1 358 -7 1 849 361 211 40 0 chr9 34604939 34605015 -89471157 + ID4_ SINE ID 2 80 -3 1 849 204 179 0 0 chr9 34606651 34606690 -89469482 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 849 1763 278 102 35 chr9 34606716 34608177 -89467995 - L1MC3 LINE L1 -1768 6017 4457 1 849 284 247 20 110 chr9 34608181 34608281 -89467891 + RSINE1 SINE B4 75 165 0 1 849 486 296 232 6 chr9 34608353 34608693 -89467479 - L1MD LINE L1 -1813 4327 3911 1 849 441 0 0 0 chr9 34608702 34608751 -89467421 + (TTG)n Simple_repeat Simple_repeat 2 50 0 1 849 684 328 125 25 chr9 34608809 34609114 -89467058 - L2 LINE L2 -671 2748 2424 1 849 249 33 0 0 chr9 34609114 34609144 -89467028 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 849 405 0 0 0 chr9 34609144 34609188 -89466984 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 849 684 328 125 25 chr9 34609188 34609362 -89466810 - L2 LINE L2 -996 2423 2222 1 849 314 341 66 7 chr9 34610159 34610295 -89465877 + MLT1A0 LTR MaLR 1 144 -221 1 849 270 365 0 19 chr9 34610836 34610942 -89465230 + MLT1A0 LTR MaLR 270 373 -1 1 849 408 88 0 0 chr9 34611205 34611262 -89464910 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 849 192 40 0 0 chr9 34611819 34611844 -89464328 + (T)n Simple_repeat Simple_repeat 1 25 0 1 849 202 363 38 25 chr9 34612846 34612967 -89463205 - MER5B DNA MER1_type -2 187 61 1 849 345 342 36 42 chr9 34612982 34613174 -89462998 - MIRb SINE MIR -49 219 29 1 849 399 41 0 0 chr9 34613284 34613333 -89462839 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 849 251 253 13 26 chr9 34613408 34613485 -89462687 - MIRc SINE MIR -127 141 66 1 849 1059 257 17 102 chr9 34613641 34614052 -89462120 + MTE2a LTR MaLR 4 379 0 1 849 484 213 51 116 chr9 34614052 34614168 -89462004 - MLT1A0 LTR MaLR -41 426 219 1 849 236 259 35 0 chr9 34614168 34614226 -89461946 - MTD LTR MaLR 0 419 360 1 849 946 218 236 14 chr9 34614354 34614647 -89461525 - MTD LTR MaLR -61 358 1 1 849 794 286 5 32 chr9 34614647 34614862 -89461310 - MLT1A0 LTR MaLR -156 209 1 1 849 6823 27 50 0 chr9 34615173 34615990 -89460182 - L1Md_F3 LINE L1 -1 6583 5726 1 849 346 300 146 133 chr9 34616220 34616512 -89459660 - MLT1A LTR MaLR 0 374 90 1 849 1499 222 50 6 chr9 34616512 34616875 -89459297 - MTE2a LTR MaLR 0 379 1 1 849 346 300 146 133 chr9 34616875 34616951 -89459221 - MLT1A LTR MaLR -285 89 1 1 849 320 280 10 70 chr9 34618761 34618861 -89457311 + MTE2a LTR MaLR 269 362 -17 1 849 357 203 13 39 chr9 34620195 34620272 -89455900 + B1_Mur1 SINE Alu 55 129 -20 1 849 1263 243 56 40 chr9 34621457 34621854 -89454318 - MTE2a LTR MaLR 0 379 1 1 849 279 333 30 0 chr9 34622069 34622168 -89454004 - MIR SINE MIR 0 262 161 1 849 218 32 65 0 chr9 34622752 34622783 -89453389 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 1 849 895 165 11 0 chr9 34622783 34622959 -89453213 + GA-rich Low_complexity Low_complexity 3 180 0 1 849 501 17 0 0 chr9 34622959 34623017 -89453155 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 1 849 25 0 0 0 chr9 34623407 34623432 -89452740 + AT_rich Low_complexity Low_complexity 1 25 0 1 849 989 225 165 5 chr9 34624543 34624878 -89451294 - MLT1A1 LTR MaLR -2 503 19 1 849 555 267 87 93 chr9 34625030 34625191 -89450981 - RSINE1 SINE B4 0 165 6 1 849 1440 94 10 0 chr9 34626617 34626809 -89449363 + B2_Mm2 SINE B2 1 194 -1 1 849 377 299 79 0 chr9 34628698 34628825 -89447347 + B1F1 SINE Alu 2 138 -11 1 849 270 296 103 29 chr9 34628958 34629094 -89447078 + MIRb SINE MIR 88 233 -35 1 849 211 389 28 0 chr9 34629101 34629114 -89447058 - ID_B1 SINE B4 -134 90 48 1 849 276 269 0 0 chr9 34629114 34629166 -89447006 - tRNA-Ala-GCG tRNA tRNA -7 68 17 1 849 675 297 160 38 chr9 34630345 34630884 -89445288 - L2a LINE L2 -53 3373 2758 1 849 847 283 71 30 chr9 34630901 34631167 -89445005 - MTEa LTR MaLR 0 379 103 1 849 270 367 27 7 chr9 34631218 34631366 -89444806 - L2a LINE L2 -671 2748 2598 1 849 186 349 84 0 chr9 34631363 34631446 -89444726 + L2b LINE L2 3285 3374 -1 1 849 225 290 115 31 chr9 34631518 34631614 -89444558 + L2b LINE L2 3271 3374 -1 1 849 1133 324 63 3 chr9 34633270 34633463 -89442709 + MTE2b LTR MaLR 1 210 -169 1 849 459 0 0 0 chr9 34633463 34633514 -89442658 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 849 1133 324 63 3 chr9 34633514 34633667 -89442505 + MTE2b LTR MaLR 211 368 -11 1 849 405 268 185 32 chr9 34635562 34635778 -89440394 - MIRb SINE MIR -10 258 10 1 849 280 333 0 10 chr9 34635801 34635898 -89440274 + GA-rich Low_complexity Low_complexity 1 96 0 1 849 219 288 0 78 chr9 34635948 34636012 -89440160 + L2c LINE L2 3313 3371 -16 1 849 905 206 138 28 chr9 34636019 34636273 -89439899 + B4 SINE B4 1 282 -10 1 849 453 36 0 0 chr9 34636288 34636343 -89439829 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 849 490 370 39 0 chr9 34637771 34638025 -89438147 - L2 LINE L2 -676 2743 2480 1 849 892 75 14 0 chr9 34638560 34638707 -89437465 + (TG)n Simple_repeat Simple_repeat 1 149 0 1 849 306 0 0 0 chr9 34638904 34638938 -89437234 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 849 203 247 206 0 chr9 34640058 34640131 -89436041 - L2a LINE L2 -1 3425 3338 2 849 425 290 0 29 chr9 34640883 34640986 -89435186 + RSINE1 SINE B4 46 145 -20 2 849 256 102 41 0 chr9 34640987 34641036 -89435136 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 849 618 272 67 12 chr9 34641464 34641628 -89434544 + B3A SINE B2 2 174 -24 2 849 22 0 0 0 chr9 34641646 34641668 -89434504 + AT_rich Low_complexity Low_complexity 1 22 0 2 849 200 312 12 38 chr9 34641865 34641945 -89434227 + MIRm SINE MIR 199 276 0 2 849 434 226 32 26 chr9 34642049 34642167 -89434005 - PB1D9 SINE Alu 0 120 11 2 849 190 351 79 36 chr9 34643374 34643513 -89432659 - MIR SINE MIR -88 174 30 2 849 240 125 0 77 chr9 34643978 34644030 -89432142 + L1Md_F LINE L1 672 719 -5800 2 849 198 71 0 0 chr9 34646551 34646579 -89429593 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2 849 243 246 144 45 chr9 34646584 34646716 -89429456 + RLTR22_Mur LTR ERVK 1282 1426 -422 2 849 862 268 43 39 chr9 34646703 34646722 -89429450 - B4A SINE B4 -4 288 270 2 849 405 0 0 0 chr9 34646722 34646767 -89429405 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 849 862 268 43 39 chr9 34646767 34647027 -89429145 - B4A SINE B4 -23 269 8 2 849 629 263 129 0 chr9 34647137 34647346 -89428826 + MIRc SINE MIR 32 267 -1 2 849 372 43 0 0 chr9 34648085 34648131 -89428041 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 849 273 386 79 30 chr9 34651577 34651780 -89424392 - MamRep38 DNA hAT -22 273 61 2 849 2842 286 81 25 chr9 34652224 34653226 -89422946 - Lx8 LINE L1 -4 7469 6412 2 849 200 339 46 23 chr9 34653572 34653702 -89422470 - L2 LINE L2 -541 2878 2746 2 849 193 350 12 0 chr9 34653874 34653954 -89422218 + MIR SINE MIR 36 116 -92 2 849 557 231 78 117 chr9 34655828 34656034 -89420138 + B3A SINE B2 1 198 0 2 849 273 321 73 22 chr9 34658376 34658513 -89417659 + ID_B1 SINE B4 48 191 -33 2 849 281 211 68 126 chr9 34658418 34658521 -89417651 + PB1D10 SINE Alu 13 109 -8 2 849 390 333 92 57 chr9 34658949 34659404 -89416768 + L2c LINE L2 2917 3387 0 2 849 3245 138 46 35 chr9 34659599 34660162 -89416010 + RMER4B LTR ERVK 17 585 0 2 849 230 312 159 77 chr9 34660403 34660636 -89415536 + ORR1E LTR MaLR 97 348 -11 2 849 248 315 83 38 chr9 34660779 34660911 -89415261 + MLT1A1 LTR MaLR 267 404 -4 2 849 254 354 10 20 chr9 34660918 34661016 -89415156 + MIRb SINE MIR 37 133 -135 2 849 243 330 29 20 chr9 34661711 34661813 -89414359 + MIRc SINE MIR 102 204 -64 2 849 333 306 71 93 chr9 34662662 34662803 -89413369 - Lx8 LINE L1 -2 7471 7341 2 849 180 0 0 0 chr9 34662803 34662823 -89413349 + (TGGG)n Simple_repeat Simple_repeat 3 22 0 2 849 333 306 71 93 chr9 34662823 34662991 -89413181 - Lx8 LINE L1 -133 7340 7170 2 849 1399 70 43 0 chr9 34662992 34663179 -89412993 + B2_Mm2 SINE B2 1 195 0 2 849 976 142 96 6 chr9 34663430 34663607 -89412565 - B2_Mm2 SINE B2 -2 193 1 2 849 234 0 0 0 chr9 34663737 34663763 -89412409 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 849 346 167 33 0 chr9 34663766 34663826 -89412346 - tRNA-Ala-GCY_ tRNA tRNA -12 63 2 2 849 335 215 41 85 chr9 34664900 34665007 -89411165 + B1F1 SINE Alu 11 121 -28 2 849 354 259 63 70 chr9 34665558 34665748 -89410424 + MTEa LTR MaLR 169 360 -19 2 849 393 321 78 43 chr9 34666629 34666860 -89409312 + MIR SINE MIR 1 239 -23 2 849 435 280 111 20 chr9 34666924 34667077 -89409095 + MER5B DNA MER1_type 3 169 -9 2 849 496 165 215 0 chr9 34667194 34667315 -89408857 + RLTR28 LTR ERVL 1 147 -334 2 849 1394 167 22 7 chr9 34667329 34667607 -89408565 + RLTR28 LTR ERVL 223 504 -20 2 849 258 32 0 0 chr9 34668802 34668833 -89407339 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 849 409 292 114 13 chr9 34670581 34670730 -89405442 - MIR SINE MIR -74 188 25 2 849 443 325 71 25 chr9 34670786 34670982 -89405190 - MIR SINE MIR -18 244 40 2 849 183 265 20 0 chr9 34671996 34672045 -89404127 - MIRc SINE MIR -29 239 190 2 849 2288 83 25 3 chr9 34672580 34672894 -89403278 - ORR1A4 LTR MaLR -8 321 1 2 849 1041 246 137 88 chr9 34673950 34674440 -89401732 + MT2A LTR ERVL 10 523 -10 2 849 1080 151 133 20 chr9 34674507 34674710 -89401462 - URR1A DNA MER1_type 0 226 1 2 849 314 365 35 0 chr9 34675086 34675201 -89400971 + MIRc SINE MIR 22 140 -128 2 849 21 0 0 0 chr9 34677420 34677441 -89398731 + GC_rich Low_complexity Low_complexity 1 21 0 2 849 343 321 73 76 chr9 34677509 34677857 -89398315 - MLT1E1A LTR MaLR -38 642 168 2 849 225 154 385 0 chr9 34678013 34678065 -89398107 + BC1_Mm scRNA scRNA 1 72 -80 2 849 1257 45 0 0 chr9 34678065 34678221 -89397951 + (GAAA)n Simple_repeat Simple_repeat 3 158 0 2 849 627 71 0 0 chr9 34678226 34678311 -89397861 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 2 849 230 263 141 96 chr9 34679680 34679885 -89396287 - MLT1J LTR MaLR -38 474 226 2 849 351 0 0 0 chr9 34681404 34681443 -89394729 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 849 272 204 78 88 chr9 34681452 34681554 -89394618 - RLTR40 LTR ERVK -211 606 506 2 849 316 202 153 41 chr9 34682055 34682153 -89394019 + MIR SINE MIR 38 146 -62 2 849 332 242 30 0 chr9 34682215 34682281 -89393891 - L2b LINE L2 -19 3356 3289 2 849 324 281 12 12 chr9 34685679 34685762 -89390410 + MIRc SINE MIR 76 158 -110 2 849 342 0 0 0 chr9 34686083 34686121 -89390051 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 849 301 280 108 72 chr9 34686518 34686864 -89389308 - MTE2a LTR MaLR -4 390 23 2 849 824 86 0 14 chr9 34687926 34688067 -89388105 + (TCTCTG)n Simple_repeat Simple_repeat 6 144 0 2 849 243 0 0 0 chr9 34688067 34688094 -89388078 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 849 862 224 62 105 chr9 34688094 34688398 -89387774 - B4 SINE B4 0 292 2 2 849 779 318 65 8 chr9 34689032 34689292 -89386880 - MER2 DNA MER2_type -67 278 4 2 849 242 261 196 23 chr9 34689295 34689423 -89386749 + MIRb SINE MIR 106 241 -21 2 849 685 171 29 0 chr9 34690386 34690561 -89385611 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 849 319 257 57 105 chr9 34690563 34690772 -89385400 - MIRb SINE MIR -60 208 10 2 849 288 290 49 20 chr9 34690788 34690890 -89385282 - MIRc SINE MIR -116 152 48 2 849 729 185 0 0 chr9 34691594 34691772 -89384400 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 849 708 181 0 0 chr9 34691785 34691951 -89384221 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 849 272 294 19 29 chr9 34691951 34692056 -89384116 + L2c LINE L2 3038 3141 -246 2 849 268 237 160 30 chr9 34692472 34692572 -89383600 + L2c LINE L2 3257 3369 -18 2 849 244 333 51 36 chr9 34692828 34692965 -89383207 + MIRc SINE MIR 11 149 -119 2 849 674 287 21 7 chr9 34693067 34693211 -89382961 + RSINE1 SINE B4 4 149 -16 2 849 186 43 0 0 chr9 34693214 34693237 -89382935 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 849 1175 76 20 18 chr9 34693237 34693677 -89382495 + (TAGA)n Simple_repeat Simple_repeat 1 441 0 2 849 237 65 0 0 chr9 34693677 34693708 -89382464 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 2 849 251 226 19 0 chr9 34693708 34693761 -89382411 + (CAGA)n Simple_repeat Simple_repeat 4 57 0 2 849 301 294 138 95 chr9 34693768 34694073 -89382099 - ORR1E LTR MaLR -41 318 1 2 849 277 289 13 0 chr9 34694547 34694623 -89381549 - AmnSINE1 SINE SINE -173 402 326 2 849 237 302 0 3 chr9 34696207 34696274 -89379898 - MIRb SINE MIR -188 88 24 2 849 1110 259 32 92 chr9 34697596 34697999 -89378173 + MTE2a LTR MaLR 1 379 0 2 849 536 213 31 0 chr9 34698298 34698425 -89377747 + L1MA7 LINE L1 6096 6226 -65 2 849 211 294 85 55 chr9 34700189 34700381 -89375791 + MIR SINE MIR 30 229 -39 2 849 319 364 58 19 chr9 34701013 34701167 -89375005 + L3 LINE CR1 4306 4465 -24 2 849 309 278 83 53 chr9 34701710 34701843 -89374329 + MIRb SINE MIR 85 221 -47 2 849 741 249 232 25 chr9 34702554 34702838 -89373334 + MER2 DNA MER2_type 3 345 0 2 849 318 284 78 10 chr9 34703159 34703262 -89372910 + MIR3 SINE MIR 88 197 -11 2 849 1491 38 0 1 chr9 34703725 34704434 -89371738 + (CTTG)n Simple_repeat Simple_repeat 1 708 0 2 849 225 241 17 17 chr9 34704486 34704545 -89371627 + MLT1A LTR MaLR 1 59 -306 2 849 575 274 101 24 chr9 34704568 34704777 -89371395 + MLT1A LTR MaLR 130 354 -20 2 849 279 248 90 67 chr9 34704920 34705054 -89371118 - MIRb SINE MIR -113 155 19 2 849 269 353 117 31 chr9 34705399 34705595 -89370577 + MIRb SINE MIR 20 232 -36 2 849 503 217 3 0 chr9 34705620 34705908 -89370264 + (TG)n Simple_repeat Simple_repeat 1 289 0 2 849 221 241 56 78 chr9 34705911 34706001 -89370171 - RSINE1 SINE B4 0 165 78 2 849 26 30 0 0 chr9 34706388 34706421 -89369751 + AT_rich Low_complexity Low_complexity 1 33 0 2 849 217 288 81 14 chr9 34706440 34706514 -89369658 - RSINE1 SINE B4 0 165 87 2 849 212 149 0 60 chr9 34706952 34707002 -89369170 + C-rich Low_complexity Low_complexity 2 48 0 2 849 324 0 0 0 chr9 34707244 34707280 -89368892 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 849 269 308 109 65 chr9 34709246 34709430 -89366742 + MIR SINE MIR 70 261 -1 2 849 355 243 14 0 chr9 34709879 34709949 -89366223 + ID4 SINE ID 2 72 -11 2 849 337 369 47 0 chr9 34710030 34710179 -89365993 + RSINE1 SINE B4 4 159 -6 2 849 191 36 36 0 chr9 34710187 34710215 -89365957 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 849 938 91 17 17 chr9 34711472 34711712 -89364460 + (TC)n Simple_repeat Simple_repeat 1 240 0 3 849 227 263 70 50 chr9 34713126 34713226 -89362946 + L2 LINE L2 2697 2798 -621 3 849 795 260 199 10 chr9 34713543 34713951 -89362221 - L1MA5 LINE L1 -281 6019 5535 3 849 495 338 75 10 chr9 34714510 34714562 -89361610 - MLT1B LTR MaLR 0 467 415 3 849 576 106 0 0 chr9 34714562 34714647 -89361525 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 849 495 320 76 63 chr9 34714647 34714817 -89361355 - MLT1B LTR MaLR -53 414 166 3 849 435 100 0 0 chr9 34714818 34714888 -89361284 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 849 302 127 0 14 chr9 34714887 34714959 -89361213 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 849 526 276 0 126 chr9 34714959 34715158 -89361014 - MLT1B LTR MaLR -214 176 3 3 849 386 327 18 0 chr9 34715329 34715442 -89360730 + MIRc SINE MIR 115 229 -39 3 849 1430 64 16 0 chr9 34717991 34718179 -89357993 - B2_Mm1a SINE B2 -1 192 2 3 849 26 0 0 0 chr9 34721425 34721451 -89354721 + AT_rich Low_complexity Low_complexity 1 26 0 3 849 279 0 0 0 chr9 34721716 34721747 -89354425 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 3 849 247 288 0 0 chr9 34722277 34722336 -89353836 - L2c LINE L2 -44 3343 3285 3 849 562 211 18 0 chr9 34722713 34722822 -89353350 + B1_Mur1 SINE Alu 23 133 -16 3 849 421 262 96 10 chr9 34723005 34723109 -89353063 - MTD LTR MaLR -304 115 3 3 849 183 237 98 73 chr9 34723800 34723882 -89352290 + L4 LINE RTE 1115 1198 -831 3 849 933 136 11 6 chr9 34724009 34724187 -89351985 + CT-rich Low_complexity Low_complexity 2 180 0 3 849 186 371 76 38 chr9 34724187 34724397 -89351775 + L2 LINE L2 2730 2947 -472 3 849 193 272 22 90 chr9 34724844 34724933 -89351239 - MIR SINE MIR -77 131 49 3 849 3571 228 22 116 chr9 34725403 34725617 -89350555 - RCHARR1 DNA MER1_type -3 971 788 3 849 1187 61 0 20 chr9 34725617 34725768 -89350404 + B1_Mus1 SINE Alu 1 148 0 3 849 3571 228 22 116 chr9 34725768 34726622 -89349550 - RCHARR1 DNA MER1_type -187 787 3 3 849 453 36 0 0 chr9 34727053 34727108 -89349064 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 3 849 210 250 0 0 chr9 34727266 34727354 -89348818 + CT-rich Low_complexity Low_complexity 72 159 0 3 849 352 312 184 52 chr9 34728300 34728567 -89347605 - LTR16C LTR ERVL -2 487 186 3 849 504 220 47 71 chr9 34728706 34728833 -89347339 - B3 SINE B2 -70 146 23 3 849 725 142 165 0 chr9 34728823 34728950 -89347222 + URR1A DNA MER1_type 6 153 -73 3 849 21 0 0 0 chr9 34729106 34729127 -89347045 + AT_rich Low_complexity Low_complexity 1 21 0 3 849 256 296 47 25 chr9 34729541 34729659 -89346513 + MIR SINE MIR 17 147 -129 3 849 363 319 69 104 chr9 34729801 34730032 -89346140 - MIRb SINE MIR -17 251 29 3 849 385 269 97 0 chr9 34731997 34732090 -89344082 + PB1D10 SINE Alu 1 102 -15 3 849 733 234 150 19 chr9 34732132 34732345 -89343827 + B4 SINE B4 1 241 -51 3 849 336 363 57 20 chr9 34732643 34732806 -89343366 + MIRb SINE MIR 12 188 -80 3 849 331 333 10 10 chr9 34733942 34734042 -89342130 + RSINE1 SINE B4 9 108 -57 3 106 306 0 0 0 chr9 34734057 34734091 -89342081 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 850 405 0 0 0 chr9 34736347 34736392 -89339780 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 850 828 244 82 92 chr9 34736635 34736928 -89339244 + B4A SINE B4 3 292 0 3 850 243 0 0 0 chr9 34737407 34737434 -89338738 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 850 333 0 0 0 chr9 34737434 34737470 -89338702 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 850 196 305 59 69 chr9 34738666 34738704 -89337468 - MIR SINE MIR -106 156 125 3 850 1706 176 78 32 chr9 34738704 34739051 -89337121 - ORR1B2 LTR MaLR 0 367 5 3 850 196 305 59 69 chr9 34739051 34739114 -89337058 - MIR SINE MIR -138 124 56 3 850 411 113 0 0 chr9 34739364 34739426 -89336746 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 850 494 326 0 28 chr9 34739430 34739572 -89336600 - RSINE1 SINE B4 -26 139 2 3 850 733 123 18 0 chr9 34740260 34740374 -89335798 - URR1B DNA MER1_type 0 225 110 3 850 324 291 12 12 chr9 34740629 34740709 -89335463 + ID_B1 SINE B4 79 158 -66 3 850 206 355 58 0 chr9 34740802 34740923 -89335249 + MIRb SINE MIR 13 140 -128 3 850 195 42 0 0 chr9 34741080 34741104 -89335068 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 850 417 299 136 41 chr9 34741167 34741387 -89334785 + B4A SINE B4 43 283 -9 3 850 552 101 0 0 chr9 34741404 34741493 -89334679 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 3 850 394 280 78 23 chr9 34742122 34742250 -89333922 + MTEa LTR MaLR 45 179 -200 3 850 236 243 124 33 chr9 34742539 34742630 -89333542 - Lx8 LINE L1 -2 7471 7384 3 850 1012 122 0 22 chr9 34742630 34742814 -89333358 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 850 236 243 124 33 chr9 34742814 34742875 -89333297 - Lx8 LINE L1 -90 7383 7305 3 850 2802 249 67 29 chr9 34742877 34743671 -89332501 - Lx8 LINE L1 -326 7147 6324 3 850 459 325 6 30 chr9 34744475 34744726 -89331446 + CT-rich Low_complexity Low_complexity 1 244 0 3 850 348 318 51 51 chr9 34744727 34744883 -89331289 - HAL1-3A_ME LINE L1 -419 2439 2284 3 850 280 306 60 68 chr9 34745361 34745494 -89330678 + MIR3 SINE MIR 11 142 -66 3 850 1425 89 26 0 chr9 34746160 34746350 -89329822 + B2_Mm2 SINE B2 1 195 0 3 850 491 82 14 0 chr9 34748904 34748977 -89327195 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 850 2234 147 14 6 chr9 34748977 34749325 -89326847 - ORR1B2 LTR MaLR -13 354 4 3 850 558 238 202 18 chr9 34749335 34749427 -89326745 - B4A SINE B4 -23 269 160 3 850 447 52 0 0 chr9 34749427 34749485 -89326687 + (ACTG)n Simple_repeat Simple_repeat 4 61 0 3 850 558 238 202 18 chr9 34749485 34749555 -89326617 - B4A SINE B4 -133 159 77 3 850 250 320 59 40 chr9 34749630 34749731 -89326441 + ID_B1 SINE B4 70 172 -52 3 850 313 274 94 12 chr9 34749649 34749741 -89326431 + B1F SINE Alu 6 102 -15 3 850 200 250 0 22 chr9 34749761 34749806 -89326366 - MIR SINE MIR -61 147 104 3 850 206 105 26 0 chr9 34751105 34751143 -89325029 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 850 408 20 0 0 chr9 34751321 34751370 -89324802 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 850 357 82 0 0 chr9 34751387 34751436 -89324736 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 3 850 810 81 0 0 chr9 34751436 34751547 -89324625 + (GGAA)n Simple_repeat Simple_repeat 4 114 0 3 850 238 299 182 53 chr9 34752086 34752273 -89323899 + LTR16A LTR ERVL 153 363 -88 3 850 187 374 0 24 chr9 34752940 34753025 -89323147 - MIR3 SINE MIR -38 170 88 3 850 199 286 89 43 chr9 34753846 34754005 -89322167 - MIRc SINE MIR -69 199 37 3 850 323 207 32 75 chr9 34755416 34755510 -89320662 + MIR3 SINE MIR 81 170 -38 3 850 1092 135 169 10 chr9 34755775 34755970 -89320202 + URR1A DNA MER1_type 1 226 0 3 850 1107 232 62 90 chr9 34756731 34757120 -89319052 - MTEa LTR MaLR 0 379 2 3 850 333 236 0 0 chr9 34757968 34758095 -89318077 + (GTATG)n Simple_repeat Simple_repeat 4 130 0 3 850 358 307 0 23 chr9 34758104 34758234 -89317938 + (GTGTG)n Simple_repeat Simple_repeat 3 129 0 3 850 342 183 0 0 chr9 34758253 34758324 -89317848 + (GTGTG)n Simple_repeat Simple_repeat 3 73 0 3 850 519 316 71 43 chr9 34758350 34758605 -89317567 + MIR SINE MIR 1 262 0 3 850 190 357 11 87 chr9 34760282 34760374 -89315798 + L2 LINE L2 15 99 -3320 3 850 704 281 36 100 chr9 34761543 34761852 -89314320 - B4A SINE B4 0 292 4 3 850 842 251 58 15 chr9 34761897 34762096 -89314076 + B3 SINE B2 6 192 -24 3 850 937 281 21 39 chr9 34762565 34762850 -89313322 + B4A SINE B4 1 280 -12 3 850 210 300 169 14 chr9 34762893 34763035 -89313137 + L3 LINE CR1 4074 4237 -252 3 850 186 296 134 12 chr9 34763054 34763136 -89313036 + L3 LINE CR1 4293 4384 -105 3 850 612 269 194 0 chr9 34765025 34765211 -89310961 + MER2 DNA MER2_type 82 303 -42 3 850 246 228 112 17 chr9 34765212 34765328 -89310844 - L1M4 LINE L1 -1709 4437 4311 3 850 615 267 115 43 chr9 34765328 34765621 -89310551 - MER47B DNA MER2_type -19 399 18 3 850 610 301 88 20 chr9 34765634 34765977 -89310195 - L1MD LINE L1 -1830 4316 3951 3 850 1026 247 35 0 chr9 34765979 34766238 -89309934 - L1MA6 LINE L1 0 6300 6033 3 850 849 274 103 47 chr9 34766251 34766744 -89309428 - L1M4 LINE L1 -2183 3963 3443 3 850 295 288 30 36 chr9 34766821 34766987 -89309185 + RMER17D2 LTR ERVK 230 394 -415 3 850 300 27 0 0 chr9 34766987 34767024 -89309148 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 850 361 365 81 51 chr9 34767275 34767607 -89308565 - MLT1A LTR MaLR 0 374 33 3 850 474 244 0 0 chr9 34767603 34767693 -89308479 + 5S rRNA rRNA 1 90 -31 3 850 452 336 93 46 chr9 34769132 34769395 -89306777 + MER102b DNA MER1_type 6 283 -58 3 850 327 315 31 23 chr9 34770580 34770710 -89305462 - MER3 DNA MER1_type 0 209 79 3 850 234 0 0 0 chr9 34773083 34773109 -89303063 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 3 850 1903 184 77 17 chr9 34773296 34773649 -89302523 - ORR1D1 LTR MaLR 0 374 1 3 850 323 342 54 20 chr9 34774840 34774989 -89301183 + MIRc SINE MIR 104 257 -11 3 850 277 242 15 0 chr9 34775134 34775200 -89300972 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 3 850 388 331 224 11 chr9 34775947 34776295 -89299877 - L2a LINE L2 -22 3404 2983 3 850 267 31 0 0 chr9 34776679 34776711 -89299461 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 850 1220 62 7 0 chr9 34776970 34777116 -89299056 + B1_Mus2 SINE Alu 1 147 0 3 850 196 296 0 0 chr9 34777806 34777860 -89298312 - L3b LINE CR1 -184 298 245 3 850 209 373 54 9 chr9 34778504 34778615 -89297557 - L3b LINE CR1 -207 275 160 3 850 203 309 23 23 chr9 34778735 34778821 -89297351 + MIR SINE MIR 52 137 -71 3 850 324 0 0 0 chr9 34779923 34779959 -89296213 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 850 492 18 0 0 chr9 34779959 34780015 -89296157 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 850 4456 62 2 2 chr9 34780128 34780709 -89295463 + L1_Mus1 LINE L1 5987 6567 0 4 850 26 30 0 0 chr9 34781844 34781877 -89294295 + AT_rich Low_complexity Low_complexity 1 33 0 4 850 635 266 61 50 chr9 34781880 34782078 -89294094 + ID_B1 SINE B4 4 203 -21 4 850 475 236 36 0 chr9 34782428 34782538 -89293634 + RSINE1 SINE B4 12 125 -40 4 850 306 0 0 0 chr9 34782539 34782573 -89293599 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 850 27 62 0 0 chr9 34782573 34782621 -89293551 + AT_rich Low_complexity Low_complexity 1 48 0 4 850 226 145 0 21 chr9 34783699 34783749 -89292423 + B1F SINE Alu 59 133 -16 4 850 222 176 59 0 chr9 34783752 34783803 -89292369 + GA-rich Low_complexity Low_complexity 5 58 0 4 850 211 316 96 54 chr9 34784950 34785117 -89291055 + MIRb SINE MIR 63 236 -32 4 850 1995 162 27 22 chr9 34787047 34787418 -89288754 + ORR1D1 LTR MaLR 2 374 0 4 850 256 275 36 81 chr9 34787618 34787729 -89288443 - MER53 DNA hAT -1 192 87 4 850 302 328 95 29 chr9 34787734 34787944 -89288228 + MIRc SINE MIR 39 262 -6 4 850 4037 138 84 85 chr9 34788553 34789064 -89287108 + RMER17B LTR ERVK 1 465 -493 4 850 1115 83 0 0 chr9 34789064 34789209 -89286963 + B1_Mus2 SINE Alu 3 147 0 4 850 4037 135 87 89 chr9 34789209 34789655 -89286517 + RMER17B LTR ERVK 466 948 -10 4 850 698 246 112 0 chr9 34790142 34790329 -89285843 + ID_B1 SINE B4 1 208 -16 4 850 624 250 97 66 chr9 34790503 34790730 -89285442 + B4A SINE B4 12 245 -47 4 850 671 242 143 0 chr9 34790721 34790882 -89285290 + B3 SINE B2 5 188 -28 4 850 410 53 18 0 chr9 34790886 34790943 -89285229 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 850 254 232 0 35 chr9 34791113 34791171 -89285001 + L2a LINE L2 3355 3410 -16 4 850 297 335 116 18 chr9 34791656 34791820 -89284352 + MIRb SINE MIR 59 238 -30 4 850 204 236 17 68 chr9 34791893 34791952 -89284220 - MIRb SINE MIR -78 190 135 4 850 189 0 0 0 chr9 34791990 34792011 -89284161 + (A)n Simple_repeat Simple_repeat 1 21 0 4 850 387 0 0 0 chr9 34793210 34793253 -89282919 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 850 194 367 30 20 chr9 34793346 34793446 -89282726 - L2a LINE L2 -4 3422 3322 4 850 477 0 0 0 chr9 34795227 34795280 -89280892 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 850 202 115 115 0 chr9 34795352 34795404 -89280768 + (CACCC)n Simple_repeat Simple_repeat 4 61 0 4 850 1153 61 0 0 chr9 34796674 34796821 -89279351 + B1_Mus2 SINE Alu 1 147 0 4 850 324 150 0 0 chr9 34796821 34796901 -89279271 + (A)n Simple_repeat Simple_repeat 1 80 0 4 850 375 250 87 48 chr9 34797889 34798042 -89278130 + MIRb SINE MIR 42 206 -62 4 850 663 246 37 21 chr9 34798061 34798248 -89277924 + B3A SINE B2 1 190 -8 4 850 352 55 36 0 chr9 34798826 34798881 -89277291 + (CTTG)n Simple_repeat Simple_repeat 2 58 0 4 850 436 261 86 7 chr9 34799066 34799205 -89276967 + MLT1A0 LTR MaLR 8 157 -208 4 850 3751 42 0 0 chr9 34799205 34799661 -89276511 + L1_Mus1 LINE L1 6112 6567 0 4 850 487 284 41 53 chr9 34799688 34799859 -89276313 + MLT1A0 LTR MaLR 142 310 -55 4 850 366 287 0 11 chr9 34799921 34800016 -89276156 + MER53 DNA hAT 95 188 -5 4 850 399 214 24 0 chr9 34799939 34800023 -89276149 - MER53 DNA hAT -100 93 8 4 850 377 291 138 37 chr9 34800352 34800570 -89275602 + MER74B LTR ERVL 289 528 -94 4 850 235 312 98 0 chr9 34801665 34801777 -89274395 + MIR3 SINE MIR 82 204 -4 4 850 320 323 127 8 chr9 34802083 34802217 -89273955 + MIR SINE MIR 12 161 -101 4 850 540 275 134 0 chr9 34802518 34802660 -89273512 + RSINE1 SINE B4 1 161 -4 4 850 245 51 26 0 chr9 34802953 34802992 -89273180 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 850 2615 164 27 67 chr9 34804021 34804577 -89271595 - RMER5 LTR ERV1 0 534 1 4 850 257 299 11 0 chr9 34804932 34805019 -89271153 - MIR3 SINE MIR 0 208 121 4 850 186 71 0 0 chr9 34807181 34807209 -89268963 + (G)n Simple_repeat Simple_repeat 1 28 0 4 850 718 118 193 0 chr9 34807327 34807446 -89268726 + B1_Mur4 SINE Alu 1 142 -8 4 850 357 24 0 0 chr9 34808652 34808694 -89267478 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 850 711 292 34 62 chr9 34808720 34808857 -89267315 - B4A SINE B4 -8 284 157 4 850 4306 127 32 18 chr9 34808857 34809600 -89266572 - RMER6A LTR ERVK 0 756 3 4 850 711 292 34 62 chr9 34809600 34809754 -89266418 - B4A SINE B4 -136 156 2 4 850 351 44 0 0 chr9 34810007 34810052 -89266120 + (TCTCC)n Simple_repeat Simple_repeat 2 46 0 4 850 940 120 0 32 chr9 34810171 34810326 -89265846 + B1_Mur4 SINE Alu 1 150 0 4 850 279 318 198 0 chr9 34811044 34811236 -89264936 + MIRb SINE MIR 2 234 -34 4 850 438 94 0 0 chr9 34811403 34811467 -89264705 + (TCC)n Simple_repeat Simple_repeat 3 66 0 4 850 423 0 0 0 chr9 34811702 34811749 -89264423 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 850 238 237 33 33 chr9 34812385 34812446 -89263726 + L1MEb LINE L1 464 524 -5546 4 850 302 287 67 37 chr9 34812702 34812836 -89263336 + RMER4B LTR ERVK 347 484 -101 4 850 250 296 31 0 chr9 34813012 34813110 -89263062 + CT-rich Low_complexity Low_complexity 2 102 0 4 850 189 0 0 0 chr9 34813237 34813258 -89262914 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 850 318 107 0 0 chr9 34814301 34814357 -89261815 + (TCTG)n Simple_repeat Simple_repeat 3 58 0 4 850 211 390 62 0 chr9 34815803 34815949 -89260223 + L2c LINE L2 3221 3383 -4 4 850 233 285 8 0 chr9 34819489 34819619 -89256553 + (CA)n Simple_repeat Simple_repeat 2 132 0 4 850 231 361 0 38 chr9 34819619 34819803 -89256369 + (CATA)n Simple_repeat Simple_repeat 3 179 0 4 850 510 316 11 0 chr9 34819763 34820009 -89256163 + (CATATA)n Simple_repeat Simple_repeat 1 248 0 4 850 380 226 86 0 chr9 34821249 34821342 -89254830 - MLT1A LTR MaLR -270 104 4 4 850 199 305 174 8 chr9 34821343 34821475 -89254697 - MIRb SINE MIR -102 166 13 4 850 231 114 0 0 chr9 34821562 34821606 -89254566 + (A)n Simple_repeat Simple_repeat 1 44 0 4 850 504 228 0 0 chr9 34821613 34821714 -89254458 + B1F SINE Alu 22 122 -27 4 850 323 310 45 17 chr9 34822121 34822298 -89253874 + Lx8 LINE L1 7285 7466 -7 4 850 23 0 0 0 chr9 34822303 34822326 -89253846 + AT_rich Low_complexity Low_complexity 1 23 0 4 850 204 40 0 0 chr9 34822334 34822359 -89253813 + (GAA)n Simple_repeat Simple_repeat 2 26 0 4 850 737 219 0 7 chr9 34823204 34823351 -89252821 + B1_Mur4 SINE Alu 3 148 -2 4 850 351 0 0 0 chr9 34823818 34823857 -89252315 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 850 342 0 0 0 chr9 34825696 34825734 -89250438 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 850 339 85 0 0 chr9 34826902 34826949 -89249223 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 850 397 254 35 35 chr9 34828479 34828593 -89247579 - RSINE1 SINE B4 -40 125 12 4 850 1050 205 238 0 chr9 34828734 34829036 -89247136 - ORR1D1 LTR MaLR 0 374 1 4 850 315 248 98 53 chr9 34829421 34829553 -89246619 + MER20 DNA MER1_type 28 165 -54 4 850 311 45 0 22 chr9 34830031 34830077 -89246095 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 850 191 119 71 43 chr9 34830284 34830354 -89245818 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 4 850 206 249 57 45 chr9 34830533 34830710 -89245462 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 4 850 433 300 25 0 chr9 34831832 34831952 -89244220 + PB1 SINE Alu 2 124 -3 4 850 188 312 123 18 chr9 34834674 34834788 -89241384 - MIR SINE MIR -77 185 60 4 850 182 310 76 50 chr9 34834842 34834961 -89241211 + MIR3 SINE MIR 35 156 -52 4 850 231 36 0 0 chr9 34835485 34835513 -89240659 + (TTG)n Simple_repeat Simple_repeat 3 30 0 4 850 248 358 28 9 chr9 34836563 34836670 -89239502 + MIR3 SINE MIR 90 198 -10 4 850 180 0 0 0 chr9 34837863 34837883 -89238289 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 850 220 295 8 4 chr9 34838120 34838195 -89237977 + MIRm SINE MIR 115 190 -78 4 850 685 298 127 10 chr9 34838231 34838539 -89237633 - MER2 DNA MER2_type -1 344 1 4 850 363 298 0 0 chr9 34838902 34838996 -89237176 + PB1D9 SINE Alu 10 103 -17 4 850 873 250 124 8 chr9 34840410 34840660 -89235512 + B4A SINE B4 2 280 -12 4 850 484 256 28 92 chr9 34840711 34840853 -89235319 + PB1D7 SINE Alu 6 138 -11 4 850 198 0 0 0 chr9 34840974 34840996 -89235176 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 850 364 271 101 96 chr9 34841007 34841290 -89234882 - ORR1E LTR MaLR -94 284 1 4 850 185 273 101 25 chr9 34841418 34841497 -89234675 + MIRb SINE MIR 170 254 -14 4 850 303 312 60 66 chr9 34844388 34844481 -89231691 + HAL1-3A_ME LINE L1 2284 2377 -481 4 850 950 136 86 6 chr9 34844481 34844644 -89231528 + B2_Mm2 SINE B2 2 177 -18 4 850 303 312 60 66 chr9 34844644 34844701 -89231471 + HAL1-3A_ME LINE L1 2378 2433 -425 4 850 232 209 42 56 chr9 34845038 34845109 -89231063 + L1M2a LINE L1 1144 1213 -5955 4 850 297 198 11 21 chr9 34845316 34845409 -89230763 + CT-rich Low_complexity Low_complexity 1 92 0 4 850 1242 45 0 25 chr9 34845456 34845615 -89230557 - B2_Mm2 SINE B2 -39 156 2 4 850 984 142 0 13 chr9 34846228 34846378 -89229794 - B1_Mur4 SINE Alu -1 149 2 4 850 249 348 78 9 chr9 34846391 34846507 -89229665 - MIRc SINE MIR -136 132 9 4 850 24 32 0 0 chr9 34847293 34847324 -89228848 + AT_rich Low_complexity Low_complexity 1 31 0 4 850 343 136 0 63 chr9 34847479 34847542 -89228630 - B1_Mus2 SINE Alu -88 59 1 4 850 367 266 0 31 chr9 34847955 34848052 -89228120 + BC1_Mm scRNA scRNA 3 96 -56 5 850 472 302 102 15 chr9 34849369 34849557 -89226615 - ID_B1 SINE B4 -1 223 19 5 850 263 263 0 17 chr9 34849508 34849566 -89226606 - tRNA-Ala-GCY_ tRNA tRNA -15 60 4 5 850 297 0 0 0 chr9 34849569 34849602 -89226570 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 850 667 187 73 22 chr9 34849627 34849764 -89226408 - B1_Mur2 SINE Alu 0 149 6 5 850 328 263 93 78 chr9 34849994 34850262 -89225910 - RMER10B LTR ERVL -109 289 18 5 850 294 29 0 0 chr9 34850350 34850385 -89225787 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 850 243 309 30 68 chr9 34850466 34850598 -89225574 + MT2B2 LTR ERVL 152 278 -306 5 850 537 262 55 8 chr9 34850488 34850615 -89225557 + B1F SINE Alu 7 139 -10 5 850 297 0 0 0 chr9 34850616 34850649 -89225523 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 850 298 339 29 51 chr9 34850654 34850791 -89225381 - MER47B DNA MER2_type -165 253 120 5 850 333 0 0 0 chr9 34850836 34850873 -89225299 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 850 347 292 69 8 chr9 34851362 34851493 -89224679 - MIRc SINE MIR -10 258 120 5 850 482 226 105 44 chr9 34851681 34851862 -89224310 + B3A SINE B2 1 192 -6 5 850 917 153 20 20 chr9 34854493 34854640 -89221532 + B1_Mur1 SINE Alu 2 148 -1 5 850 366 61 0 0 chr9 34854685 34854734 -89221438 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 5 850 280 279 29 0 chr9 34855758 34855826 -89220346 - ID SINE ID -146 78 9 5 850 760 271 26 5 chr9 34855863 34856052 -89220120 - B3 SINE B2 -20 196 4 5 850 276 296 86 102 chr9 34856097 34856225 -89219947 + MTEa LTR MaLR 8 133 -246 5 850 286 314 38 28 chr9 34856489 34856650 -89219522 - MIR SINE MIR -11 257 89 5 850 558 291 77 41 chr9 34857009 34857232 -89218940 - ID_B1 SINE B4 -44 248 28 5 850 1850 156 158 8 chr9 34857424 34857786 -89218386 + MTC LTR MaLR 6 421 0 5 850 548 302 78 58 chr9 34857957 34858209 -89217963 + MLT1E2 LTR MaLR 255 518 -106 5 850 420 252 50 0 chr9 34858393 34858492 -89217680 + PB1D9 SINE Alu 7 110 -10 5 850 305 251 168 0 chr9 34858922 34859034 -89217138 + B1F SINE Alu 1 128 -21 5 850 231 348 101 30 chr9 34859035 34859204 -89216968 - MIRb SINE MIR -22 246 66 5 850 258 169 6 51 chr9 34861260 34861332 -89214840 + B1F SINE Alu 80 150 0 5 850 234 0 0 0 chr9 34861332 34861358 -89214814 + (A)n Simple_repeat Simple_repeat 1 26 0 5 850 200 286 0 0 chr9 34861712 34861761 -89214411 + A-rich Low_complexity Low_complexity 4 52 0 5 850 208 174 22 0 chr9 34864295 34864341 -89211831 + A-rich Low_complexity Low_complexity 2 48 0 5 850 282 167 0 0 chr9 34864479 34864539 -89211633 + CT-rich Low_complexity Low_complexity 1 60 0 5 850 216 0 0 0 chr9 34864539 34864563 -89211609 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 850 279 0 0 0 chr9 34864563 34864593 -89211579 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 850 266 283 228 0 chr9 34864642 34864734 -89211438 - B1F SINE Alu -32 117 5 5 851 286 304 34 17 chr9 34865227 34865344 -89210828 + MER5A1 DNA MER1_type 1 119 -47 5 851 492 18 0 0 chr9 34865517 34865574 -89210598 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 851 27 29 0 0 chr9 34865588 34865622 -89210550 + AT_rich Low_complexity Low_complexity 1 34 0 5 851 260 245 14 32 chr9 34865863 34865947 -89210225 + MLT1A1 LTR MaLR 242 365 -43 5 851 321 232 101 0 chr9 34866990 34867059 -89209113 - ID4 SINE ID 0 83 8 5 851 1055 246 110 26 chr9 34867514 34867799 -89208373 + MTEa LTR MaLR 3 306 -73 5 851 231 61 0 0 chr9 34867799 34867832 -89208340 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 851 1055 246 110 26 chr9 34867832 34867892 -89208280 + MTEa LTR MaLR 307 376 -3 5 851 282 250 75 21 chr9 34868000 34868094 -89208078 + MLT1A0 LTR MaLR 4 102 -306 5 851 424 248 8 40 chr9 34868316 34868442 -89207730 + MLT1A0 LTR MaLR 242 363 -2 5 851 1839 316 100 63 chr9 34868459 34869534 -89206638 + MLT1A0-int LTR MaLR 16 1198 -537 5 851 2442 131 111 5 chr9 34869652 34870067 -89206105 + RMER6B LTR ERVK 1 459 -2 5 851 9899 116 21 11 chr9 34870074 34871560 -89204612 + MYSERV6-int LTR ERVK 2 1502 -7457 5 851 7517 221 53 84 chr9 34871562 34871962 -89204210 + MYSERV6-int LTR ERVK 2273 2658 -3892 5 851 1364 70 49 0 chr9 34871962 34872147 -89204025 + B2_Mm2 SINE B2 2 195 0 5 851 10193 124 31 21 chr9 34872147 34873678 -89202494 + MYSERV6-int LTR ERVK 2659 4361 -4598 5 851 1095 70 35 0 chr9 34873678 34873820 -89202352 - B1_Mus1 SINE Alu 0 148 2 5 851 10193 105 28 8 chr9 34873820 34874082 -89202090 + MYSERV6-int LTR ERVK 4362 4622 -4337 5 851 7507 130 45 59 chr9 34874087 34875444 -89200728 + MYSERV6-int LTR ERVK 6611 7913 -1046 5 851 1209 36 0 0 chr9 34875444 34875583 -89200589 + B1_Mm SINE Alu 1 139 -8 5 851 258 115 0 271 chr9 34875583 34875642 -89200530 + MYSERV6-int LTR ERVK 7908 7939 -1020 5 851 40 59 0 0 chr9 34875655 34875723 -89200449 + AT_rich Low_complexity Low_complexity 1 68 0 5 851 4713 130 32 47 chr9 34875725 34876659 -89199513 + MYSERV6-int LTR ERVK 7949 8959 0 5 851 2703 112 81 5 chr9 34876667 34877089 -89199083 + RMER6B LTR ERVK 8 461 0 5 851 725 193 15 15 chr9 34877222 34877359 -89198813 - B1_Mur1 SINE Alu -11 138 2 5 851 333 68 0 0 chr9 34878227 34878271 -89197901 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 851 274 290 0 14 chr9 34878273 34878343 -89197829 - ID4 SINE ID -13 70 2 5 851 781 341 42 3 chr9 34878397 34878709 -89197463 + Lx8 LINE L1 6915 7238 -235 5 851 969 94 25 0 chr9 34878709 34878868 -89197304 + (TTTCC)n Simple_repeat Simple_repeat 3 165 0 5 851 467 205 77 18 chr9 34878877 34879046 -89197126 - RMER17C LTR ERVK -137 273 95 5 851 432 263 53 0 chr9 34879276 34879390 -89196782 - B1F1 SINE Alu -20 129 10 5 851 277 342 0 13 chr9 34879452 34879529 -89196643 - ID4 SINE ID -6 77 2 5 851 868 340 37 2 chr9 34879547 34879898 -89196274 + Lx8 LINE L1 6867 7238 -235 5 851 371 94 31 0 chr9 34879905 34879969 -89196203 + (TTTTC)n Simple_repeat Simple_repeat 4 69 0 5 851 385 237 18 60 chr9 34879970 34880136 -89196036 - RMER17C LTR ERVK -139 271 113 5 851 426 298 33 0 chr9 34880470 34880591 -89195581 - B1F1 SINE Alu -20 129 5 5 851 408 82 0 0 chr9 34880630 34880691 -89195481 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 851 796 334 42 3 chr9 34880818 34881130 -89195042 + Lx8 LINE L1 6915 7238 -235 5 851 250 181 14 27 chr9 34881130 34881143 -89195029 + polypyrimidine Low_complexity Low_complexity 62 75 0 5 851 1386 56 0 0 chr9 34881143 34881323 -89194849 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 5 851 250 181 14 27 chr9 34881323 34881383 -89194789 + CT-rich Low_complexity Low_complexity 4 61 0 5 851 456 211 77 18 chr9 34881392 34881561 -89194611 - RMER17C LTR ERVK -137 273 95 5 851 432 263 53 0 chr9 34881791 34881905 -89194267 - B1F1 SINE Alu -20 129 10 5 851 277 342 0 13 chr9 34881967 34882044 -89194128 - ID4 SINE ID -6 77 2 5 851 788 330 35 48 chr9 34882062 34882428 -89193744 + Lx8 LINE L1 6867 7238 -235 5 851 263 98 39 0 chr9 34882435 34882486 -89193686 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 5 851 436 223 18 60 chr9 34882488 34882655 -89193517 - RMER17C LTR ERVK -138 272 113 5 851 376 294 37 0 chr9 34882989 34883098 -89193074 - B1F1 SINE Alu -20 129 17 5 851 332 354 35 91 chr9 34883007 34883134 -89193038 - ID_B1 SINE B4 -35 189 72 5 851 467 69 14 0 chr9 34883134 34883206 -89192966 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 851 332 354 35 91 chr9 34883206 34883277 -89192895 - ID SINE ID -153 71 2 5 851 836 328 42 3 chr9 34883333 34883645 -89192527 + Lx8 LINE L1 6915 7238 -235 5 851 365 82 33 0 chr9 34883652 34883713 -89192459 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 5 851 385 237 18 60 chr9 34883716 34883882 -89192290 - RMER17C LTR ERVK -139 271 113 5 851 426 298 33 0 chr9 34884216 34884337 -89191835 - B1F1 SINE Alu -20 129 5 5 851 426 79 0 0 chr9 34884376 34884439 -89191733 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 851 864 325 42 3 chr9 34884566 34884878 -89191294 + Lx8 LINE L1 6915 7238 -235 5 851 344 119 30 0 chr9 34884885 34884952 -89191220 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 5 851 413 242 18 60 chr9 34884953 34885120 -89191052 - RMER17C LTR ERVK -138 272 113 5 851 376 294 37 0 chr9 34885454 34885563 -89190609 - B1F1 SINE Alu -20 129 17 5 851 332 354 35 91 chr9 34885472 34885599 -89190573 - ID_B1 SINE B4 -35 189 72 5 851 503 66 13 0 chr9 34885599 34885675 -89190497 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 851 332 354 35 91 chr9 34885675 34885746 -89190426 - ID SINE ID -153 71 2 5 851 840 328 42 3 chr9 34885802 34886114 -89190058 + Lx8 LINE L1 6915 7238 -235 5 851 324 102 0 0 chr9 34886121 34886170 -89190002 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 5 851 413 242 18 60 chr9 34886189 34886356 -89189816 - RMER17C LTR ERVK -138 272 113 5 851 432 263 53 0 chr9 34886690 34886804 -89189368 - B1F1 SINE Alu -20 129 10 5 851 277 342 0 13 chr9 34886866 34886943 -89189229 - ID4 SINE ID -6 77 2 5 851 788 330 35 48 chr9 34886961 34887327 -89188845 + Lx8 LINE L1 6867 7238 -235 5 851 263 98 39 0 chr9 34887334 34887385 -89188787 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 5 851 436 223 18 60 chr9 34887386 34887553 -89188619 - RMER17C LTR ERVK -138 272 113 5 851 426 298 33 0 chr9 34887887 34888008 -89188164 - B1F1 SINE Alu -20 129 5 5 851 462 75 0 0 chr9 34888047 34888114 -89188058 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 851 836 328 42 3 chr9 34888241 34888553 -89187619 + Lx8 LINE L1 6915 7238 -235 5 851 365 82 33 0 chr9 34888560 34888621 -89187551 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 5 851 385 239 24 61 chr9 34888624 34888789 -89187383 - RMER17C LTR ERVK -139 271 113 5 851 415 306 33 0 chr9 34889123 34889244 -89186928 - B1F1 SINE Alu -20 129 5 5 851 408 82 0 0 chr9 34889283 34889344 -89186828 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 851 796 334 42 3 chr9 34889471 34889783 -89186389 + Lx8 LINE L1 6915 7238 -235 5 851 214 127 53 35 chr9 34889784 34889796 -89186376 + polypyrimidine Low_complexity Low_complexity 49 60 0 5 851 1500 22 0 0 chr9 34889796 34889976 -89186196 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 6 851 417 39 0 0 chr9 34889976 34890027 -89186145 + (TCTCC)n Simple_repeat Simple_repeat 5 55 0 6 851 214 127 53 35 chr9 34890027 34890070 -89186102 + CT-rich Low_complexity Low_complexity 5 48 0 6 851 456 211 77 18 chr9 34890070 34890239 -89185933 - RMER17C LTR ERVK -137 273 95 6 851 432 263 53 0 chr9 34890469 34890583 -89185589 - B1F1 SINE Alu -20 129 10 6 851 277 342 0 13 chr9 34890645 34890722 -89185450 - ID4 SINE ID -6 77 2 6 851 868 340 37 2 chr9 34890740 34891091 -89185081 + Lx8 LINE L1 6867 7238 -235 6 851 365 82 33 0 chr9 34891098 34891159 -89185013 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 6 851 385 237 18 60 chr9 34891161 34891327 -89184845 - RMER17C LTR ERVK -139 271 113 6 851 426 298 33 0 chr9 34891661 34891782 -89184390 - B1F1 SINE Alu -20 129 5 6 851 462 75 0 0 chr9 34891821 34891888 -89184284 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 851 864 325 42 3 chr9 34892015 34892327 -89183845 + Lx8 LINE L1 6915 7238 -235 6 851 344 119 30 0 chr9 34892334 34892401 -89183771 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 6 851 413 242 18 60 chr9 34892402 34892569 -89183603 - RMER17C LTR ERVK -138 272 113 6 851 376 294 37 0 chr9 34892903 34893012 -89183160 - B1F1 SINE Alu -20 129 17 6 851 332 354 35 91 chr9 34892921 34893048 -89183124 - ID_B1 SINE B4 -35 189 72 6 851 449 71 14 0 chr9 34893048 34893118 -89183054 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 851 332 354 35 91 chr9 34893118 34893189 -89182983 - ID SINE ID -153 71 2 6 851 796 334 42 3 chr9 34893245 34893557 -89182615 + Lx8 LINE L1 6915 7238 -235 6 851 215 268 18 0 chr9 34893557 34893570 -89182602 + polypyrimidine Low_complexity Low_complexity 48 60 0 6 851 1287 79 0 0 chr9 34893570 34893747 -89182425 + (TTTCC)n Simple_repeat Simple_repeat 4 180 0 6 851 215 268 18 0 chr9 34893747 34893789 -89182383 + polypyrimidine Low_complexity Low_complexity 5 47 0 6 851 456 211 77 18 chr9 34893789 34893958 -89182214 - RMER17C LTR ERVK -137 273 95 6 851 432 263 53 0 chr9 34894188 34894302 -89181870 - B1F1 SINE Alu -20 129 10 6 851 277 342 0 13 chr9 34894364 34894441 -89181731 - ID4 SINE ID -6 77 2 6 851 788 330 35 48 chr9 34894459 34894825 -89181347 + Lx8 LINE L1 6867 7238 -235 6 851 263 98 39 0 chr9 34894832 34894883 -89181289 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 6 851 436 223 18 60 chr9 34894885 34895052 -89181120 - RMER17C LTR ERVK -138 272 113 6 851 376 294 37 0 chr9 34895386 34895495 -89180677 - B1F1 SINE Alu -20 129 17 6 851 332 354 35 91 chr9 34895404 34895531 -89180641 - ID_B1 SINE B4 -35 189 72 6 851 449 71 14 0 chr9 34895531 34895601 -89180571 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 851 332 354 35 91 chr9 34895601 34895672 -89180500 - ID SINE ID -153 71 2 6 851 836 328 42 3 chr9 34895728 34896040 -89180132 + Lx8 LINE L1 6915 7238 -235 6 851 365 82 33 0 chr9 34896047 34896108 -89180064 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 6 851 385 237 18 60 chr9 34896111 34896277 -89179895 - RMER17C LTR ERVK -139 271 113 6 851 426 298 33 0 chr9 34896611 34896732 -89179440 - B1F1 SINE Alu -20 129 5 6 851 462 75 0 0 chr9 34896771 34896838 -89179334 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 851 840 328 42 3 chr9 34896965 34897277 -89178895 + Lx8 LINE L1 6915 7238 -235 6 851 344 119 30 0 chr9 34897284 34897351 -89178821 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 6 851 413 242 18 60 chr9 34897352 34897519 -89178653 - RMER17C LTR ERVK -138 272 113 6 851 376 314 33 0 chr9 34897853 34897974 -89178198 - B1F1 SINE Alu -20 129 5 6 851 282 106 0 0 chr9 34898013 34898060 -89178112 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 851 715 342 46 8 chr9 34898149 34898499 -89177673 + Lx8 LINE L1 6867 7238 -235 6 851 837 0 0 0 chr9 34898499 34898592 -89177580 + (TTTCC)n Simple_repeat Simple_repeat 3 95 0 6 851 489 221 71 12 chr9 34898634 34898803 -89177369 - RMER17C LTR ERVK -137 273 95 6 851 423 272 53 0 chr9 34899032 34899146 -89177026 - B1F1 SINE Alu -20 129 10 6 851 633 47 0 0 chr9 34899183 34899268 -89176904 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 851 861 334 39 5 chr9 34899358 34899709 -89176463 + Lx8 LINE L1 6867 7238 -235 6 851 205 155 35 0 chr9 34899714 34899772 -89176400 + T-rich Low_complexity Low_complexity 2 61 0 6 851 440 221 17 63 chr9 34899788 34899962 -89176210 - RMER17C LTR ERVK -135 275 110 6 851 396 293 35 0 chr9 34900187 34900303 -89175869 - B1F1 SINE Alu -20 129 10 6 851 816 11 0 0 chr9 34900306 34900399 -89175773 + (TTTCC)n Simple_repeat Simple_repeat 3 95 0 6 851 361 213 40 73 chr9 34900441 34900618 -89175554 - RMER17C LTR ERVK -137 273 103 6 851 464 267 35 0 chr9 34900847 34900963 -89175209 - B1F1 SINE Alu -20 129 10 6 851 205 309 154 0 chr9 34901152 34901262 -89174910 - MIR SINE MIR -36 226 100 6 851 4264 106 15 0 chr9 34901414 34902006 -89174166 + MT2B LTR ERVL 1 601 0 6 851 354 245 0 69 chr9 34902831 34902932 -89173240 + L2a LINE L2 3333 3426 0 6 851 638 243 33 26 chr9 34903788 34903940 -89172232 + RSINE1 SINE B4 3 155 -10 6 851 234 247 206 33 chr9 34903980 34904164 -89172008 + MER33 DNA MER1_type 42 257 -67 6 851 610 223 9 0 chr9 34904178 34904290 -89171882 + ID_B1 SINE B4 112 224 0 6 851 512 338 7 29 chr9 34904301 34904441 -89171731 + RSINE1 SINE B4 25 161 -4 6 851 240 308 138 40 chr9 34904326 34904478 -89171694 + B3 SINE B2 49 215 -1 6 851 677 225 14 7 chr9 34904504 34904643 -89171529 - B1_Mur4 SINE Alu -1 149 10 6 851 402 282 50 25 chr9 34904643 34904763 -89171409 - B3 SINE B2 -4 212 90 6 851 261 376 0 0 chr9 34904760 34904853 -89171319 - PB1D10 SINE Alu -23 94 2 6 851 232 277 0 0 chr9 34905926 34905966 -89170206 + B1_Mus2 SINE Alu 14 53 -94 6 851 475 238 51 120 chr9 34905966 34906124 -89170048 + B1_Mur2 SINE Alu 1 147 -2 6 851 1081 289 76 24 chr9 34906789 34907289 -89168883 + L1MB3 LINE L1 5612 6137 -46 6 851 553 278 78 60 chr9 34907294 34907562 -89168610 + B4 SINE B4 1 273 -19 6 851 249 83 0 0 chr9 34907566 34907602 -89168570 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 851 332 300 16 91 chr9 34907683 34907804 -89168368 + PB1D10 SINE Alu 1 112 -5 6 851 207 69 0 0 chr9 34908106 34908135 -89168037 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 851 692 251 128 44 chr9 34908647 34908851 -89167321 + ID_B1 SINE B4 2 222 -2 6 851 1282 106 5 16 chr9 34908948 34909107 -89167065 + B2_Mm1a SINE B2 1 160 -33 6 851 522 0 0 0 chr9 34909107 34909165 -89167007 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 6 851 1282 106 5 16 chr9 34909165 34909197 -89166975 + B2_Mm1a SINE B2 161 189 -4 6 851 226 284 45 81 chr9 34909542 34909653 -89166519 - PB1D9 SINE Alu -2 118 12 6 851 243 88 0 0 chr9 34909884 34909918 -89166254 + (CATA)n Simple_repeat Simple_repeat 3 36 0 6 851 498 288 0 26 chr9 34910036 34910150 -89166022 - PB1D10 SINE Alu -1 116 6 6 851 325 230 95 0 chr9 34910223 34910297 -89165875 - ID_B1 SINE B4 -9 215 135 6 851 257 272 59 200 chr9 34910297 34910310 -89165862 - B1F SINE Alu -3 128 79 6 851 939 90 104 0 chr9 34910310 34910444 -89165728 - B1_Mus1 SINE Alu 0 148 1 6 851 257 272 59 200 chr9 34910444 34910520 -89165652 - B1F SINE Alu -71 78 1 6 851 293 291 44 55 chr9 34910447 34910538 -89165634 - ID_B1 SINE B4 -71 153 64 6 851 414 0 0 0 chr9 34910946 34910992 -89165180 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 851 244 301 143 19 chr9 34910998 34911103 -89165069 + MER91A DNA Tip100 69 186 -10 6 851 231 188 27 123 chr9 34911468 34911541 -89164631 + MT2B LTR ERVL 164 229 -372 6 851 292 261 38 166 chr9 34911485 34911560 -89164612 + B4 SINE B4 97 166 -126 6 851 1562 57 5 0 chr9 34911560 34911752 -89164420 + B2_Mm1a SINE B2 1 193 0 6 851 661 133 45 129 chr9 34911752 34911823 -89164349 + B1_Mus1 SINE Alu 76 147 -1 6 851 292 261 38 166 chr9 34911823 34911887 -89164285 + B4 SINE B4 167 280 -12 6 851 237 331 43 14 chr9 34912211 34912352 -89163820 - L2 LINE L2 -492 2927 2783 6 851 523 314 79 35 chr9 34912767 34913091 -89163081 - MER47B DNA MER2_type -12 406 13 6 851 414 0 0 0 chr9 34913656 34913702 -89162470 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 851 203 88 0 29 chr9 34913713 34913748 -89162424 + (GGGAA)n Simple_repeat Simple_repeat 1 34 0 6 851 3197 35 0 0 chr9 34914438 34914812 -89161360 - L1Md_T LINE L1 0 6582 6209 6 851 759 196 7 13 chr9 34916089 34916239 -89159933 - B1_Mur4 SINE Alu -1 149 1 6 851 432 0 0 0 chr9 34916968 34917016 -89159156 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 851 213 211 0 0 chr9 34917097 34917149 -89159023 + CT-rich Low_complexity Low_complexity 2 53 0 6 851 295 184 49 156 chr9 34918870 34918893 -89157279 + MT2B LTR ERVL 148 157 -444 6 851 663 150 41 16 chr9 34918893 34919015 -89157157 + B1_Mus1 SINE Alu 1 125 -23 6 851 180 307 22 33 chr9 34919133 34919224 -89156948 + L3 LINE CR1 3527 3616 -873 6 851 187 237 48 48 chr9 34919866 34919928 -89156244 + MIR SINE MIR 33 94 -114 6 851 295 332 108 104 chr9 34920228 34920452 -89155720 - B4A SINE B4 -11 281 56 6 851 1172 61 0 45 chr9 34920452 34920607 -89155565 - B1_Mus1 SINE Alu 0 148 1 6 851 295 332 108 104 chr9 34920607 34920661 -89155511 - B4A SINE B4 -237 55 2 6 851 241 82 20 20 chr9 34920685 34920735 -89155437 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 7 851 375 238 200 0 chr9 34920739 34920844 -89155328 - ID_B1 SINE B4 -22 202 77 7 851 830 183 82 35 chr9 34922365 34922535 -89153637 - B3 SINE B2 -16 200 23 7 851 618 282 54 74 chr9 34922614 34922817 -89153355 - ID_B1 SINE B4 -7 217 19 7 851 26 0 0 0 chr9 34922842 34922868 -89153304 + GC_rich Low_complexity Low_complexity 1 26 0 7 851 216 218 0 84 chr9 34924399 34924494 -89151678 + G-rich Low_complexity Low_complexity 1 87 0 7 851 448 256 6 49 chr9 34924543 34924707 -89151465 + GA-rich Low_complexity Low_complexity 2 158 0 7 851 193 242 113 0 chr9 34925691 34925753 -89150419 - MIRm SINE MIR -4 272 204 7 851 230 277 0 0 chr9 34925993 34926040 -89150132 + MIR SINE MIR 37 83 -125 7 851 365 284 0 0 chr9 34926333 34926414 -89149758 - PB1D10 SINE Alu -13 104 24 7 851 356 274 94 0 chr9 34927293 34927399 -89148773 + PB1D7 SINE Alu 1 116 -4 7 851 302 281 102 19 chr9 34927412 34927539 -89148633 - MLT1A0 LTR MaLR -219 155 7 7 851 1325 153 5 23 chr9 34927621 34927841 -89148331 - B3 SINE B2 0 216 1 7 851 195 302 19 0 chr9 34927847 34927900 -89148272 - MIR SINE MIR -77 185 132 7 851 293 299 0 83 chr9 34928061 34928145 -89148027 + B4 SINE B4 60 136 -156 7 851 225 278 38 100 chr9 34928098 34928178 -89147994 + PB1D10 SINE Alu 5 79 -38 7 851 331 260 13 25 chr9 34928215 34928294 -89147878 + ID2 SINE ID 4 81 -2 7 851 820 238 28 46 chr9 34928369 34928585 -89147587 + B3 SINE B2 2 213 -3 7 851 296 209 246 0 chr9 34928615 34928725 -89147447 + MER2 DNA MER2_type 106 242 -103 7 851 504 200 110 0 chr9 34934191 34934291 -89141881 + PB1D10 SINE Alu 1 111 -6 7 851 231 175 55 33 chr9 34934489 34934567 -89141605 - ID4 SINE ID -63 89 6 7 851 235 260 96 0 chr9 34936085 34936158 -89140014 + PB1D10 SINE Alu 37 116 -1 7 851 196 245 20 39 chr9 34936191 34936242 -89139930 + L2b LINE L2 3325 3374 -1 7 851 222 329 0 41 chr9 34936303 34936376 -89139796 + ID SINE ID 4 73 -151 7 851 2087 175 75 46 chr9 34938231 34938687 -89137485 - RLTR28B LTR ERVL -12 469 1 7 851 325 225 42 0 chr9 34940148 34940219 -89135953 + MIR SINE MIR 175 248 -14 7 851 408 317 75 37 chr9 34940515 34940702 -89135470 + B4A SINE B4 2 195 -97 7 851 338 269 214 43 chr9 34940887 34941027 -89135145 + RSINE1 SINE B4 2 165 0 7 851 1599 27 27 0 chr9 34941153 34941340 -89134832 + B2_Mm1t SINE B2 2 193 0 7 851 180 0 0 0 chr9 34941979 34941999 -89134173 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 851 754 270 24 57 chr9 34942015 34942227 -89133945 + ID_B1 SINE B4 1 205 -19 7 851 318 267 48 72 chr9 34942250 34942375 -89133797 + MTC LTR MaLR 1 122 -299 7 851 868 141 142 63 chr9 34942369 34942559 -89133613 + URR1A DNA MER1_type 22 226 0 7 851 956 231 88 82 chr9 34942559 34942865 -89133307 + MTE2a LTR MaLR 72 379 0 7 851 243 0 0 0 chr9 34944146 34944173 -89131999 + (A)n Simple_repeat Simple_repeat 1 27 0 7 851 440 284 107 119 chr9 34944334 34944586 -89131586 + MIR SINE MIR 7 255 -7 7 851 401 244 235 0 chr9 34944587 34944702 -89131470 + RSINE1 SINE B4 24 165 0 7 851 244 307 108 50 chr9 34944776 34944896 -89131276 - MER20 DNA MER1_type -69 150 24 7 851 853 140 57 6 chr9 34944886 34945044 -89131128 + MTC-int LTR MaLR 1093 1258 0 7 851 1885 153 105 37 chr9 34945044 34945399 -89130773 + MTC LTR MaLR 41 421 0 7 851 526 233 43 8 chr9 34945420 34945537 -89130635 - B1F2 SINE Alu -1 148 28 7 851 247 279 100 62 chr9 34945545 34945564 -89130608 + MT2B LTR ERVL 144 167 -434 7 851 514 142 32 58 chr9 34945564 34945689 -89130483 + B1_Mur4 SINE Alu 1 137 -13 7 851 261 293 158 17 chr9 34946214 34946391 -89129781 + MIRb SINE MIR 5 206 -62 7 851 428 313 27 22 chr9 34946628 34946811 -89129361 + MIR SINE MIR 3 186 -76 7 851 684 0 0 0 chr9 34946856 34946932 -89129240 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 851 258 105 0 0 chr9 34947723 34947761 -89128411 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 7 851 375 272 191 19 chr9 34948088 34948193 -89127979 + PB1 SINE Alu 5 127 0 7 851 458 172 39 48 chr9 34948346 34948434 -89127738 + B3A SINE B2 93 182 -16 7 851 396 0 0 0 chr9 34948434 34948478 -89127694 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 851 458 172 39 48 chr9 34948478 34948493 -89127679 + B3A SINE B2 183 195 -3 7 851 224 236 80 50 chr9 34948728 34948834 -89127338 - MIRb SINE MIR -38 230 111 7 851 1101 49 0 40 chr9 34949582 34949731 -89126441 - B1_Mus1 SINE Alu 0 148 6 7 851 516 252 6 104 chr9 34949623 34949805 -89126367 - MT2B LTR ERVL -337 264 101 7 851 633 230 51 46 chr9 34950338 34950534 -89125638 + B3A SINE B2 1 197 -1 7 851 600 230 48 0 chr9 34950702 34950828 -89125344 + B1_Mur1 SINE Alu 2 133 -16 7 851 290 290 0 0 chr9 34950856 34950918 -89125254 + ID4_ SINE ID 11 72 -11 7 851 423 83 0 0 chr9 34950920 34950980 -89125192 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 851 448 272 0 37 chr9 34950982 34951089 -89125083 + PB1D10 SINE Alu 12 114 -3 7 851 425 194 75 28 chr9 34951152 34951258 -89124914 - Lx9 LINE L1 -1638 6006 5896 7 851 229 355 83 31 chr9 34951584 34951776 -89124396 + RMER15 LTR ERVL 356 557 -18 7 851 2103 143 110 33 chr9 34951822 34952213 -89123959 + MTC LTR MaLR 1 421 0 7 851 495 0 0 0 chr9 34952364 34952419 -89123753 + (CAAAT)n Simple_repeat Simple_repeat 2 56 0 7 851 1283 242 264 0 chr9 34952565 34952992 -89123180 + RMER1B Other Other 21 525 -541 7 851 3891 188 52 158 chr9 34952994 34954122 -89122050 + RMER1A Other Other 1 1009 -21 7 851 674 185 58 29 chr9 34954227 34954366 -89121806 - B1_Mm SINE Alu -2 145 3 7 851 453 241 0 67 chr9 34954507 34954627 -89121545 - PB1D10 SINE Alu -2 115 4 7 851 232 327 0 0 chr9 34954665 34954717 -89121455 - ID4_ SINE ID -11 72 21 7 851 1939 65 0 51 chr9 34954907 34955182 -89120990 + RLTR10A LTR ERVK 1 261 -150 7 851 1008 75 8 0 chr9 34955166 34955300 -89120872 + RLTR27 LTR ERVK 175 309 0 7 851 1155 90 55 17 chr9 34955593 34955774 -89120398 - B2_Mm1t SINE B2 -4 189 2 7 851 1162 81 0 0 chr9 34955850 34955998 -89120174 - B1_Mus1 SINE Alu 0 148 1 7 851 914 81 0 45 chr9 34956255 34956410 -89119762 - L1Md_F2 LINE L1 -1 6581 6434 7 851 259 291 61 122 chr9 34957156 34957336 -89118836 + RLTR25B LTR ERVK 860 1028 0 7 851 422 173 13 0 chr9 34957465 34957540 -89118632 - MER5A DNA MER1_type -99 90 15 7 851 478 230 67 69 chr9 34957653 34957784 -89118388 + RSINE1 SINE B4 3 143 -22 7 851 789 237 26 26 chr9 34957848 34958039 -89118133 + B3A SINE B2 1 191 -7 7 851 7921 149 113 126 chr9 34958255 34959492 -89116680 + Lx5 LINE L1 3686 4807 -1070 7 851 1750 152 68 26 chr9 34959492 34959803 -89116369 - ORR1A4 LTR MaLR -5 324 1 7 851 7921 149 113 126 chr9 34959803 34960290 -89115882 + Lx5 LINE L1 4808 5250 -627 7 851 1552 57 0 20 chr9 34960290 34960486 -89115686 + B2_Mm1a SINE B2 2 193 0 7 851 7921 133 76 70 chr9 34960486 34961302 -89114870 + Lx5 LINE L1 5251 6073 -977 7 851 2224 260 79 91 chr9 34961293 34962037 -89114135 + Lx5 LINE L1 6181 6915 -135 7 851 396 0 0 0 chr9 34962194 34962238 -89113934 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 7 851 1189 48 14 0 chr9 34962238 34962377 -89113795 - B1_Mur4 SINE Alu -8 142 2 7 851 810 161 22 7 chr9 34962379 34962517 -89113655 - B1_Mur3 SINE Alu -1 148 9 7 851 460 248 53 132 chr9 34962380 34962608 -89113564 - B4 SINE B4 -69 223 14 7 851 320 172 17 0 chr9 34962893 34962951 -89113221 + PB1D10 SINE Alu 57 115 -2 7 851 519 271 67 8 chr9 34963001 34963135 -89113037 + B1F2 SINE Alu 2 143 -6 7 851 274 262 48 48 chr9 34963141 34963225 -89112947 - MIR SINE MIR -142 120 37 7 851 236 155 0 22 chr9 34965779 34965840 -89110332 + B1_Mur4 SINE Alu 87 146 -1 7 851 1271 149 17 63 chr9 34965962 34966199 -89109973 + URR1A DNA MER1_type 1 226 0 7 851 184 264 19 117 chr9 34966244 34966347 -89109825 - L4 LINE RTE -1596 433 341 7 851 198 91 0 0 chr9 34966349 34966382 -89109790 + (T)n Simple_repeat Simple_repeat 1 33 0 7 851 555 187 203 0 chr9 34966489 34966612 -89109560 - B1_Mur1 SINE Alu 0 149 2 7 851 274 322 87 24 chr9 34966756 34966963 -89109209 - L1MC LINE L1 -2051 5831 5612 7 851 1135 49 35 0 chr9 34967161 34967303 -89108869 - B1_Mus1 SINE Alu 0 148 2 7 851 603 190 26 0 chr9 34967430 34967546 -89108626 + PB1D9 SINE Alu 2 120 0 7 851 230 250 0 0 chr9 34967945 34967989 -89108183 - MER58B DNA MER1_type -18 323 280 7 851 372 189 55 25 chr9 34968121 34968235 -89107937 + PB1D9 SINE Alu 35 149 0 7 851 249 347 44 40 chr9 34968358 34968586 -89107586 + HAL1 LINE L1 812 1040 -1467 7 851 272 300 22 0 chr9 34969123 34969213 -89106959 + HAL1 LINE L1 1494 1585 -922 7 851 281 301 184 25 chr9 34969249 34969450 -89106722 + HAL1 LINE L1 1663 1895 -612 7 851 419 234 0 0 chr9 34969887 34969964 -89106208 + ID4 SINE ID 5 81 -2 7 851 222 174 0 0 chr9 34970212 34970258 -89105914 + CT-rich Low_complexity Low_complexity 3 48 0 7 851 188 253 110 50 chr9 34970518 34970618 -89105554 - MIRc SINE MIR -60 208 103 7 851 189 0 0 0 chr9 34971223 34971244 -89104928 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 851 459 35 0 0 chr9 34971244 34971300 -89104872 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 851 394 299 78 44 chr9 34972318 34972524 -89103648 + MER112 DNA MER1_type 32 244 -17 8 851 1464 71 5 0 chr9 34972667 34972851 -89103321 - B2_Mm1a SINE B2 -7 186 2 8 851 217 220 20 0 chr9 34973816 34973866 -89102306 + G-rich Low_complexity Low_complexity 2 52 0 8 851 942 240 24 0 chr9 34974992 34975200 -89100972 + B3 SINE B2 1 213 -3 8 851 235 343 43 0 chr9 34975621 34975691 -89100481 - ID4_ SINE ID -6 77 5 8 851 415 270 8 67 chr9 34975703 34975822 -89100350 - PB1 SINE Alu -2 125 14 8 851 228 319 43 21 chr9 34976265 34976358 -89099814 - MER5A DNA MER1_type -85 104 10 8 851 310 284 91 0 chr9 34976474 34976562 -89099610 + MER58C DNA MER1_type 115 210 -5 8 851 883 225 52 0 chr9 34977510 34977701 -89098471 + B3 SINE B2 3 203 -13 8 851 301 279 119 14 chr9 34977912 34978073 -89098099 + MIRm SINE MIR 67 254 -8 8 851 1446 80 16 0 chr9 34978078 34978265 -89097907 + B2_Mm2 SINE B2 2 191 -4 8 851 546 270 88 20 chr9 34978358 34978562 -89097610 - MER20 DNA MER1_type -1 218 1 8 851 484 258 131 154 chr9 34978900 34979198 -89096974 + B4 SINE B4 1 291 -1 8 851 312 48 0 0 chr9 34979250 34979292 -89096880 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 8 851 954 82 89 0 chr9 34979295 34979430 -89096742 - B1_Mus1 SINE Alu -1 147 1 8 851 2439 65 15 58 chr9 34979598 34979940 -89096232 - ORR1A2 LTR MaLR 0 327 1 8 851 312 298 35 97 chr9 34979950 34980112 -89096060 - MIRm SINE MIR -36 172 20 8 851 2260 98 25 3 chr9 34980366 34980685 -89095487 + ORR1A3 LTR MaLR 1 326 0 8 851 626 113 16 87 chr9 34980694 34980820 -89095352 + B1_Mus1 SINE Alu 1 117 -31 8 851 868 270 38 77 chr9 34980820 34981081 -89095091 - B4A SINE B4 -41 251 1 8 851 2034 200 46 56 chr9 34981109 34981628 -89094544 + Lx9 LINE L1 7004 7517 -127 8 851 186 103 0 0 chr9 34981628 34981657 -89094515 + (TA)n Simple_repeat Simple_repeat 2 30 0 8 851 1548 278 63 17 chr9 34981672 34982085 -89094087 + RCHARR1 DNA MER1_type 80 511 -463 8 851 431 263 35 49 chr9 34982089 34982233 -89093939 + RSINE1 SINE B4 5 146 -19 8 851 21 0 0 0 chr9 34982234 34982255 -89093917 + GC_rich Low_complexity Low_complexity 1 21 0 8 851 1514 184 129 91 chr9 34982268 34982739 -89093433 + RCHARR1 DNA MER1_type 484 972 -2 8 851 367 204 204 0 chr9 34984021 34984119 -89092053 - PB1D9 SINE Alu 0 120 3 8 851 4142 57 15 21 chr9 34984483 34985005 -89091167 - MURVY-LTR LTR ERV1 0 519 1 8 851 217 337 59 24 chr9 34985404 34985489 -89090683 + B4 SINE B4 81 168 -124 8 851 385 227 91 0 chr9 34985425 34985513 -89090659 + PB1D9 SINE Alu 19 114 -6 8 851 405 58 0 0 chr9 34985617 34985669 -89090503 + (CTTG)n Simple_repeat Simple_repeat 2 53 0 8 851 495 176 35 61 chr9 34985671 34985786 -89090386 - B1F2 SINE Alu -5 144 33 8 851 1219 120 22 0 chr9 34986851 34987035 -89089137 - B2_Mm1t SINE B2 -5 188 1 8 851 372 136 0 17 chr9 34987135 34987195 -89088977 + B1F2 SINE Alu 3 61 -88 8 851 351 186 42 28 chr9 34987195 34987207 -89088965 + ID_B1 SINE B4 84 156 -68 8 851 414 0 0 0 chr9 34987225 34987271 -89088901 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 851 377 271 48 66 chr9 34987438 34987604 -89088568 + RSINE1 SINE B4 3 165 0 8 851 1566 43 5 0 chr9 34987622 34987807 -89088365 - B2_Mm1a SINE B2 -7 186 1 8 851 1237 99 5 52 chr9 34987845 34987878 -89088294 - B2_Mm2 SINE B2 -11 184 160 8 851 207 0 0 0 chr9 34987878 34987901 -89088271 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 851 1237 99 5 52 chr9 34987901 34988059 -89088113 - B2_Mm2 SINE B2 -36 159 2 8 851 192 152 0 0 chr9 34988066 34988099 -89088073 + T-rich Low_complexity Low_complexity 2 34 0 8 851 1094 70 7 0 chr9 34988123 34988265 -89087907 - B1_Mus1 SINE Alu 0 148 6 8 851 526 259 41 27 chr9 34988378 34988525 -89087647 - RSINE1 SINE B4 -14 151 3 8 851 755 123 98 0 chr9 34988613 34988735 -89087437 + B1_Mus2 SINE Alu 14 147 0 8 851 481 235 75 8 chr9 34988807 34988940 -89087232 + B1F2 SINE Alu 2 143 -6 8 851 274 257 18 73 chr9 34989060 34989169 -89087003 + MLT1A1 LTR MaLR 1 103 -262 8 851 2124 212 10 29 chr9 34989174 34989592 -89086580 - MTD LTR MaLR -9 410 1 8 851 1843 173 24 47 chr9 34989597 34989937 -89086235 - ORR1D1 LTR MaLR 0 374 37 8 851 1163 100 82 0 chr9 34989937 34990107 -89086065 + B2_Mm2 SINE B2 3 186 -9 8 851 1843 173 24 47 chr9 34990107 34990149 -89086023 - ORR1D1 LTR MaLR -338 36 1 8 851 3259 60 2 8 chr9 34990173 34990575 -89085597 + MTB LTR MaLR 1 400 0 8 851 331 287 45 18 chr9 34990861 34990971 -89085201 + MLT1A1 LTR MaLR 294 406 -2 8 851 23 33 0 0 chr9 34991541 34991571 -89084601 + AT_rich Low_complexity Low_complexity 1 30 0 8 851 446 305 55 67 chr9 34991619 34991784 -89084388 + B3A SINE B2 6 168 -30 8 851 247 290 31 24 chr9 34991821 34991948 -89084224 + L1M5 LINE L1 4012 4139 -2007 8 851 290 271 140 19 chr9 34992059 34992273 -89083899 + L1M5 LINE L1 4365 4604 -1542 8 851 708 231 13 33 chr9 34992478 34992630 -89083542 + B1_Mur2 SINE Alu 1 149 0 8 851 302 269 90 27 chr9 34992723 34992834 -89083338 + PB1D7 SINE Alu 1 118 -2 8 851 349 239 71 78 chr9 34993118 34993136 -89083036 + CYRA11_Mm Unknown Y-chromosome 157 173 -444 8 851 835 81 44 2 chr9 34993136 34993277 -89082895 - URR1B DNA MER1_type 0 225 79 8 851 310 72 463 10 chr9 34993254 34993351 -89082821 - B2_Mm2 SINE B2 -8 187 47 8 851 1225 113 11 22 chr9 34993398 34993579 -89082593 - B2_Mm1t SINE B2 -14 179 1 8 851 540 141 33 0 chr9 34993579 34993671 -89082501 - URR1B DNA MER1_type -110 115 21 8 851 21 0 0 0 chr9 34994010 34994031 -89082141 + AT_rich Low_complexity Low_complexity 1 21 0 8 851 198 0 0 0 chr9 34994336 34994358 -89081814 + (T)n Simple_repeat Simple_repeat 1 22 0 8 851 1147 49 28 0 chr9 34994358 34994502 -89081670 - B1_Mus1 SINE Alu 0 148 1 8 851 261 231 62 0 chr9 34994576 34994641 -89081531 - tRNA-Ala-GCY_ tRNA tRNA -3 72 4 8 851 1082 177 9 51 chr9 34994684 34994898 -89081274 - B3 SINE B2 -11 205 1 8 851 180 0 0 0 chr9 34995831 34995851 -89080321 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 851 829 114 99 0 chr9 34995851 34995982 -89080190 - B1_Mus2 SINE Alu -3 144 1 8 851 235 266 20 69 chr9 34996040 34996141 -89080031 - MIR SINE MIR -134 128 33 8 852 1246 97 27 0 chr9 34997130 34997316 -89078856 + B2_Mm1t SINE B2 1 191 -2 8 852 638 133 37 104 chr9 34997461 34997595 -89078577 + B1_Mur1 SINE Alu 25 149 0 8 852 265 240 184 13 chr9 34997891 34997967 -89078205 + ID_B1 SINE B4 102 190 -34 8 852 289 295 281 11 chr9 34998053 34998243 -89077929 + MIRb SINE MIR 22 251 -17 8 852 288 333 151 38 chr9 34999185 34999397 -89076775 + MIR SINE MIR 13 248 -14 8 852 246 248 54 90 chr9 34999441 34999552 -89076620 + PB1D9 SINE Alu 12 118 -2 8 852 480 272 95 8 chr9 34999559 34999685 -89076487 + B1F1 SINE Alu 3 139 -10 8 852 504 122 0 0 chr9 34999767 34999849 -89076323 + (TG)n Simple_repeat Simple_repeat 1 82 0 8 852 475 289 17 42 chr9 34999850 34999969 -89076203 - RSINE1 SINE B4 -1 164 49 8 852 360 254 62 112 chr9 35000007 35000167 -89076005 + L1M5 LINE L1 4525 4676 -1470 1 852 465 228 95 48 chr9 35001194 35001383 -89074789 + B3A SINE B2 1 198 0 2 852 1155 62 0 7 chr9 35001488 35001626 -89074546 + B1_Mus1 SINE Alu 2 139 -9 3 852 230 0 33 0 chr9 35001626 35001656 -89074516 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 852 270 81 0 0 chr9 35002133 35002170 -89074002 + (A)n Simple_repeat Simple_repeat 1 37 0 5 852 644 242 0 30 chr9 35002183 35002315 -89073857 + B1F1 SINE Alu 3 130 -19 6 852 180 0 0 0 chr9 35002322 35002342 -89073830 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 7 852 180 0 0 0 chr9 35002352 35002372 -89073800 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 852 402 21 0 0 chr9 35002596 35002643 -89073529 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 852 922 221 58 5 chr9 35002672 35002877 -89073295 + B3 SINE B2 1 216 0 1 852 243 304 0 14 chr9 35002953 35003023 -89073149 + ID_B1 SINE B4 146 214 -10 1 852 693 66 0 0 chr9 35003051 35003142 -89073030 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 852 262 241 33 122 chr9 35003287 35003377 -89072795 + ID4 SINE ID 2 83 0 1 852 444 286 8 23 chr9 35003402 35003531 -89072641 + ID_B1 SINE B4 93 219 -5 1 852 252 0 0 0 chr9 35003544 35003572 -89072600 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 852 381 298 61 0 chr9 35003578 35003692 -89072480 + RSINE1 SINE B4 4 124 -41 1 852 397 76 15 15 chr9 35003692 35003759 -89072413 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 852 808 178 190 22 chr9 35003783 35003967 -89072205 - B3 SINE B2 -1 215 1 1 852 216 86 0 0 chr9 35003987 35004022 -89072150 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 852 1500 53 16 11 chr9 35004030 35004220 -89071952 + B2_Mm2 SINE B2 2 192 -3 2 852 291 122 0 0 chr9 35004245 35004294 -89071878 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 852 247 253 133 0 chr9 35004326 35004401 -89071771 - ID_B1 SINE B4 -56 168 84 2 852 295 230 40 6 chr9 35004566 35004642 -89071530 + B1F1 SINE Alu 3 74 -43 2 852 1189 74 0 0 chr9 35004944 35005092 -89071080 + B1_Mus1 SINE Alu 1 148 0 2 852 180 0 0 0 chr9 35005092 35005112 -89071060 + (A)n Simple_repeat Simple_repeat 1 20 0 2 852 261 341 72 14 chr9 35005242 35005260 -89070912 + L1M5 LINE L1 4867 4885 -1261 2 852 733 229 43 38 chr9 35005260 35005469 -89070703 - ID_B1 SINE B4 -13 211 2 2 852 261 341 72 14 chr9 35005469 35005658 -89070514 + L1M5 LINE L1 4886 5085 -1061 2 852 515 175 139 16 chr9 35005673 35005795 -89070377 - B1F SINE Alu -7 142 6 2 852 558 271 117 7 chr9 35005851 35006237 -89069935 + L1M5 LINE L1 5130 5549 -629 2 852 344 245 88 0 chr9 35006265 35006367 -89069805 - PB1D10 SINE Alu -5 112 2 2 852 244 151 304 78 chr9 35006367 35006379 -89069793 - ID_B1 SINE B4 -4 219 80 3 852 843 203 14 69 chr9 35006403 35006620 -89069552 - B3 SINE B2 -11 205 1 3 852 1387 192 217 22 chr9 35008340 35008750 -89067422 + RMER5 LTR ERV1 13 502 -32 3 852 1416 57 0 49 chr9 35008750 35008796 -89067376 - B2_Mm1a SINE B2 0 193 157 3 852 297 0 0 0 chr9 35008796 35008829 -89067343 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 852 1416 57 0 49 chr9 35008829 35008985 -89067187 - B2_Mm1a SINE B2 -37 156 1 3 852 296 263 137 29 chr9 35009227 35009329 -89066843 - ID_B1 SINE B4 -28 196 84 3 852 387 246 76 8 chr9 35009346 35009477 -89066695 + B3A SINE B2 29 168 -30 3 852 472 305 90 45 chr9 35009506 35009774 -89066398 - B4 SINE B4 -12 280 1 3 852 192 40 0 0 chr9 35010149 35010174 -89065998 + (GGGTG)n Simple_repeat Simple_repeat 4 28 0 3 852 422 155 14 0 chr9 35011402 35011473 -89064699 - ID2 SINE ID -9 74 3 3 852 1328 65 58 21 chr9 35011792 35011980 -89064192 - B2_Mm2 SINE B2 0 195 1 4 852 221 216 118 0 chr9 35013925 35013976 -89062196 + ID4_ SINE ID 14 70 -13 4 852 1851 170 48 32 chr9 35014160 35014536 -89061636 + ORR1C2 LTR MaLR 3 384 0 4 852 957 240 13 31 chr9 35014580 35014804 -89061368 - ID_B1 SINE B4 -4 220 1 4 852 189 0 0 0 chr9 35015232 35015253 -89060919 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 852 606 236 124 22 chr9 35016159 35016337 -89059835 + MER58A DNA MER1_type 28 223 -1 4 852 337 278 21 0 chr9 35017245 35017342 -89058830 + PB1D10 SINE Alu 13 111 -6 4 852 502 257 53 0 chr9 35025636 35025749 -89050423 - RSINE1 SINE B4 -45 120 2 4 852 974 212 40 5 chr9 35026055 35026254 -89049918 - B3 SINE B2 -10 206 1 4 852 307 359 22 22 chr9 35026392 35026526 -89049646 + B1F1 SINE Alu 1 134 -15 4 852 282 53 0 0 chr9 35026902 35026940 -89049232 + B1_Mus2 SINE Alu 2 39 -108 5 852 285 180 48 16 chr9 35026963 35027025 -89049147 - B1F SINE Alu -77 72 9 5 852 927 60 22 0 chr9 35027034 35027168 -89049004 + B1_Mm SINE Alu 11 147 0 5 852 1196 27 7 20 chr9 35027199 35027348 -89048824 + B1_Mus2 SINE Alu 1 147 0 5 852 399 248 140 9 chr9 35027555 35027669 -89048503 + B3 SINE B2 2 130 -86 5 852 28 0 0 0 chr9 35027691 35027719 -89048453 + AT_rich Low_complexity Low_complexity 1 28 0 5 852 260 310 49 20 chr9 35027734 35027836 -89048336 + B1F1 SINE Alu 6 110 -39 5 852 496 152 113 9 chr9 35027831 35027937 -89048235 + B1_Mur1 SINE Alu 31 147 -2 5 852 180 0 0 0 chr9 35027939 35027959 -89048213 + (A)n Simple_repeat Simple_repeat 1 20 0 5 852 352 273 0 75 chr9 35028091 35028198 -89047974 - PB1D10 SINE Alu -18 99 1 5 852 616 80 0 11 chr9 35028253 35028342 -89047830 + BC1_Mm scRNA scRNA 3 90 -62 6 852 535 100 22 22 chr9 35028531 35028623 -89047549 - B3A SINE B2 -105 93 2 6 852 321 82 66 0 chr9 35029462 35029523 -89046649 - B2_Mm1t SINE B2 0 193 129 6 852 1432 68 6 0 chr9 35029560 35029737 -89046435 - B2_Mm1t SINE B2 -14 179 2 6 852 454 248 89 51 chr9 35029779 35029936 -89046236 - RSINE1 SINE B4 0 165 3 6 852 633 288 68 30 chr9 35030119 35030384 -89045788 - B4A SINE B4 -16 276 2 6 852 237 65 0 0 chr9 35030515 35030546 -89045626 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 852 1449 68 11 0 chr9 35031408 35031598 -89044574 - B2_Mm1a SINE B2 0 193 2 6 852 760 171 23 8 chr9 35031834 35031964 -89044208 - B1_Mur2 SINE Alu -17 132 1 6 852 210 291 202 0 chr9 35031982 35032061 -89044111 - PB1D10 SINE Alu -22 95 1 6 852 2635 65 85 21 chr9 35032079 35032455 -89043717 + MTB LTR MaLR 1 400 0 7 852 6340 101 30 122 chr9 35032455 35033664 -89042508 + MTB-int LTR MaLR 1 1098 0 7 852 956 61 8 0 chr9 35033664 35033796 -89042376 + MTB LTR MaLR 1 133 -267 7 852 229 269 14 43 chr9 35033812 35033882 -89042290 - B4 SINE B4 -89 203 136 7 852 1624 138 120 7 chr9 35033903 35034195 -89041977 - ORR1A3 LTR MaLR 0 326 2 7 852 465 322 202 11 chr9 35034367 35034649 -89041523 + ORR1E LTR MaLR 18 353 -6 7 852 462 221 43 99 chr9 35035213 35035354 -89040818 - B1F1 SINE Alu -13 136 4 7 852 396 102 0 33 chr9 35035448 35035509 -89040663 + MTD LTR MaLR 95 153 -266 7 852 231 191 261 45 chr9 35035515 35035603 -89040569 + B1_Mus1 SINE Alu 39 145 -3 7 852 733 144 225 11 chr9 35035675 35035857 -89040315 + MTD LTR MaLR 199 419 0 7 852 400 213 61 53 chr9 35035882 35035996 -89040176 - B1F SINE Alu -24 125 11 7 852 21 0 0 0 chr9 35036043 35036064 -89040108 + AT_rich Low_complexity Low_complexity 1 21 0 7 852 211 214 0 0 chr9 35036212 35036254 -89039918 - ID4_ SINE ID -1 82 41 7 852 848 265 0 0 chr9 35036304 35036474 -89039698 + B3A SINE B2 1 170 -28 8 852 598 215 246 17 chr9 35036494 35036669 -89039503 + B3 SINE B2 2 216 0 8 852 460 272 97 0 chr9 35036703 35036806 -89039366 + B1_Mur2 SINE Alu 1 113 -36 8 852 453 286 0 0 chr9 35037263 35037368 -89038804 - PB1 SINE Alu -22 105 1 8 852 980 243 0 0 chr9 35037966 35038155 -89038017 + B3 SINE B2 2 190 -26 8 852 284 268 87 58 chr9 35039267 35039370 -89036802 - PB1D7 SINE Alu -1 119 14 8 852 1944 130 191 33 chr9 35039385 35039783 -89036389 + RMER6B LTR ERVK 1 461 0 8 852 1039 224 0 61 chr9 35040802 35041030 -89035142 + B3 SINE B2 2 215 -1 8 852 1090 95 7 0 chr9 35041055 35041202 -89034970 + B1_Mus1 SINE Alu 1 148 0 8 852 494 216 65 39 chr9 35041256 35041410 -89034762 - L1M4 LINE L1 -2286 3860 3703 8 852 474 264 93 12 chr9 35041472 35041633 -89034539 + RLTR42-int LTR ERVK 1227 1400 -4122 9 852 383 0 21 0 chr9 35042221 35042268 -89033904 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 852 752 148 0 8 chr9 35043185 35043314 -89032858 - B1_Mur1 SINE Alu -7 142 15 9 852 273 291 0 0 chr9 35045064 35045142 -89031030 + B1F2 SINE Alu 1 78 -39 9 852 358 273 114 7 chr9 35045309 35045449 -89030723 - RSINE1 SINE B4 -8 157 3 9 852 1079 87 92 12 chr9 35045749 35045912 -89030260 + B2_Mm1t SINE B2 2 177 -16 9 852 351 104 19 21 chr9 35045956 35046021 -89030151 + B2_Mm2 SINE B2 48 116 -82 9 852 880 142 226 6 chr9 35046095 35046272 -89029900 + B3 SINE B2 1 216 0 9 852 293 306 50 20 chr9 35046363 35046463 -89029709 - PB1D10 SINE Alu -9 108 6 9 852 324 316 11 0 chr9 35046381 35046476 -89029696 - ID_B1 SINE B4 -56 168 73 9 852 1250 236 115 99 chr9 35047267 35047790 -89028382 + MT2A LTR ERVL 1 531 -2 1 852 207 191 46 31 chr9 35048052 35048117 -89028055 + A-rich Low_complexity Low_complexity 2 67 0 1 852 8835 57 0 0 chr9 35048971 35050047 -89026125 + L1Md_F2 LINE L1 4511 5586 -297 1 852 8401 39 3 1 chr9 35050047 35051040 -89025132 + L1Md_F2 LINE L1 5587 6581 -1 1 852 191 186 0 41 chr9 35051051 35051124 -89025048 + A-rich Low_complexity Low_complexity 1 70 0 1 852 256 338 59 7 chr9 35051124 35051276 -89024896 + HAL1 LINE L1 1562 1721 -786 1 852 661 166 10 49 chr9 35051520 35051652 -89024520 - B1_Mur2 SINE Alu 0 149 26 1 852 428 191 92 41 chr9 35051855 35051953 -89024219 + PB1D10 SINE Alu 14 116 -1 1 852 570 29 0 0 chr9 35052976 35053044 -89023128 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 852 457 223 190 0 chr9 35053053 35053174 -89022998 - RSINE1 SINE B4 -19 146 3 1 852 458 47 0 30 chr9 35053808 35053874 -89022298 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 1 852 1231 21 7 7 chr9 35053879 35054025 -89022147 - B1_Mm SINE Alu 0 147 2 1 852 607 183 114 0 chr9 35054356 35054487 -89021685 + B1_Mus1 SINE Alu 2 147 -1 1 852 24 0 0 0 chr9 35054752 35054776 -89021396 + AT_rich Low_complexity Low_complexity 1 24 0 1 852 215 227 0 0 chr9 35056120 35056164 -89020008 + CT-rich Low_complexity Low_complexity 4 47 0 1 852 513 225 0 9 chr9 35056437 35056549 -89019623 + ID_B1 SINE B4 106 216 -8 1 852 324 0 0 0 chr9 35057128 35057164 -89019008 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 852 696 250 77 0 chr9 35057837 35058005 -89018167 - B3 SINE B2 -34 182 2 1 852 1033 257 28 60 chr9 35058043 35058328 -89017844 + B4 SINE B4 13 288 -4 1 852 568 205 31 0 chr9 35058469 35058638 -89017534 + MT2A LTR ERVL 242 540 -61 1 852 372 184 0 30 chr9 35058724 35058825 -89017347 + GA-rich Low_complexity Low_complexity 5 102 0 1 852 1254 34 0 0 chr9 35059221 35059368 -89016804 + B1_Mus1 SINE Alu 2 148 0 1 852 287 266 47 0 chr9 35059467 35059531 -89016641 + B1F1 SINE Alu 11 77 -72 1 852 797 26 250 25 chr9 35059574 35059694 -89016478 - B1_Mus1 SINE Alu 0 148 2 1 852 231 220 20 0 chr9 35059937 35059987 -89016185 + B4A SINE B4 8 58 -234 1 852 221 267 0 0 chr9 35060086 35060146 -89016026 - ID4_ SINE ID -16 67 8 1 852 298 237 128 26 chr9 35060721 35060838 -89015334 + L2a LINE L2 3260 3388 -38 1 852 734 256 148 12 chr9 35061311 35061568 -89014604 - B4A SINE B4 0 292 1 1 852 819 76 0 8 chr9 35061613 35061744 -89014428 - B2_Mm1t SINE B2 -9 186 63 1 852 1892 143 61 61 chr9 35061754 35062149 -89014023 + RMER4A LTR ERVK 58 452 -14 1 852 211 277 197 25 chr9 35063617 35063690 -89012482 - L2a LINE L2 -1 3425 3338 1 852 234 0 0 0 chr9 35063690 35063716 -89012456 + (CAAAC)n Simple_repeat Simple_repeat 1 26 0 1 852 211 277 197 25 chr9 35063716 35063764 -89012408 - L2a LINE L2 -89 3337 3283 1 852 1068 57 76 0 chr9 35064012 35064169 -89012003 + B2_Mm2 SINE B2 1 169 -26 1 852 473 216 18 18 chr9 35064185 35064298 -89011874 + ID_B1 SINE B4 78 190 -34 1 852 354 261 68 17 chr9 35064195 35064312 -89011860 + B1F2 SINE Alu 6 128 -21 1 852 304 322 12 20 chr9 35064312 35064484 -89011688 + GA-rich Low_complexity Low_complexity 1 170 0 1 852 1275 41 0 0 chr9 35064764 35064911 -89011261 - B1_Mus1 SINE Alu 0 148 2 1 852 449 233 19 10 chr9 35065516 35065620 -89010552 - PB1D10 SINE Alu -10 107 3 1 852 1278 27 0 0 chr9 35066026 35066172 -89010000 + B1_Mus1 SINE Alu 3 148 0 1 852 192 40 0 0 chr9 35066172 35066197 -89009975 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 852 359 267 0 22 chr9 35066325 35066417 -89009755 + MTEb LTR MaLR 3 92 -287 1 852 289 206 0 150 chr9 35066816 35066896 -89009276 + RMER17C-int LTR ERVK 2607 2674 -564 1 852 3220 85 36 38 chr9 35066896 35067372 -89008800 - MT2C_Mm LTR ERVL 0 475 1 1 852 251 0 30 0 chr9 35067372 35067405 -89008767 - MERVL-int LTR ERVL 0 5485 5452 1 852 326 164 13 40 chr9 35067407 35067483 -89008689 - ORR1A3-int LTR MaLR -1323 640 567 1 852 385 108 122 0 chr9 35067483 35067557 -89008615 - MERVL_2A-int LTR ERVL -132 5629 5547 1 852 1369 150 9 5 chr9 35067575 35067789 -89008383 - MERVL_2A-int LTR ERVL -276 5485 5271 1 852 2906 83 10 10 chr9 35067789 35068189 -89007983 - MTB LTR MaLR 0 400 1 1 852 1199 207 3 54 chr9 35068189 35068505 -89007667 + RMER10B LTR ERVL 33 332 -66 1 852 257 210 169 17 chr9 35068525 35068666 -89007506 + MTEb LTR MaLR 201 379 0 1 852 218 175 105 0 chr9 35068732 35068789 -89007383 - MIR SINE MIR -82 180 118 1 852 324 48 0 0 chr9 35068841 35068883 -89007289 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 852 467 264 76 0 chr9 35068883 35069027 -89007145 - B3 SINE B2 -50 166 12 1 852 452 192 65 28 chr9 35069510 35069617 -89006555 + PB1D10 SINE Alu 5 115 -2 1 852 242 306 47 103 chr9 35070087 35070320 -89005852 + L1MC5 LINE L1 7654 7873 -88 1 852 332 205 21 64 chr9 35070373 35070467 -89005705 - ID_B1 SINE B4 -6 218 129 1 852 370 222 256 0 chr9 35071252 35071369 -89004803 + B1F SINE Alu 2 148 -1 1 852 1168 76 0 0 chr9 35071413 35071558 -89004614 + B1_Mus1 SINE Alu 1 145 -3 1 852 234 0 0 0 chr9 35071558 35071584 -89004588 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 852 740 187 64 7 chr9 35071640 35071780 -89004392 - B1_Mur1 SINE Alu 0 149 2 1 852 270 0 0 0 chr9 35071801 35071831 -89004341 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 852 220 239 22 0 chr9 35072681 35072727 -89003445 - RSINE1 SINE B4 -104 61 15 1 852 682 184 88 0 chr9 35072989 35073125 -89003047 - B1_Mur2 SINE Alu 0 149 2 1 852 316 261 54 11 chr9 35073903 35073996 -89002176 + B1_Mur4 SINE Alu 3 99 -51 1 852 243 0 0 0 chr9 35074003 35074030 -89002142 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 852 216 0 0 0 chr9 35076754 35076778 -88999394 + (A)n Simple_repeat Simple_repeat 1 24 0 1 852 652 197 86 14 chr9 35077051 35077190 -88998982 - B1_Mur4 SINE Alu -1 149 1 1 852 241 307 63 32 chr9 35077270 35077428 -88998744 - MER5A1 DNA MER1_type 0 166 4 1 852 774 266 130 8 chr9 35077932 35078186 -88997986 - B4A SINE B4 -7 285 1 1 852 488 265 73 7 chr9 35078208 35078345 -88997827 - B1_Mur1 SINE Alu -1 148 3 1 852 323 96 19 0 chr9 35078373 35078425 -88997747 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 1 852 414 231 0 21 chr9 35078444 35078537 -88997635 - RSINE1 SINE B4 -64 101 11 1 852 312 114 157 0 chr9 35078553 35078623 -88997549 - PB1D10 SINE Alu -6 111 31 1 852 418 234 159 6 chr9 35078741 35078904 -88997268 - B3A SINE B2 -3 195 8 1 852 289 192 68 14 chr9 35078911 35078985 -88997187 - L1M5 LINE L1 -514 5610 5533 1 852 698 282 10 15 chr9 35079230 35079428 -88996744 + B3A SINE B2 1 197 -1 1 852 268 222 0 36 chr9 35079531 35079587 -88996585 + ID4 SINE ID 16 69 -14 1 852 534 224 110 21 chr9 35080561 35080756 -88995416 + L1MB3 LINE L1 5808 6021 -147 1 852 819 170 99 0 chr9 35081171 35081342 -88994830 - ORR1D2 LTR MaLR -14 356 169 1 852 405 0 0 0 chr9 35081358 35081403 -88994769 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 852 674 98 36 0 chr9 35081436 35081548 -88994624 + URR1B DNA MER1_type 110 225 0 1 852 458 183 0 11 chr9 35081553 35081647 -88994525 - ORR1D2 LTR MaLR -274 96 4 1 852 567 216 0 0 chr9 35081772 35081888 -88994284 - PB1D9 SINE Alu -1 119 4 1 852 349 254 40 56 chr9 35081776 35081901 -88994271 - B4 SINE B4 -89 203 81 1 852 413 19 0 18 chr9 35082376 35082431 -88993741 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 852 392 215 203 34 chr9 35083344 35083548 -88992624 - MER102b DNA MER1_type -32 309 70 1 852 2763 201 62 62 chr9 35083553 35084299 -88991873 - Lx9 LINE L1 0 7644 6899 1 852 339 252 138 9 chr9 35084402 35084518 -88991654 + B4 SINE B4 24 154 -138 1 852 228 182 70 35 chr9 35084531 35084588 -88991584 + B4A SINE B4 230 288 -4 1 852 189 0 0 0 chr9 35084618 35084639 -88991533 + (CG)n Simple_repeat Simple_repeat 2 22 0 1 852 313 115 0 19 chr9 35084639 35084692 -88991480 + HAL1-3A_ME LINE L1 1976 2027 -831 1 852 1227 135 149 3 chr9 35085421 35085676 -88990496 + MTB_Mm LTR MaLR 60 359 -48 1 852 964 213 41 41 chr9 35085674 35085919 -88990253 - ORR1D2 LTR MaLR -125 245 1 1 852 23 0 0 0 chr9 35085970 35085993 -88990179 + AT_rich Low_complexity Low_complexity 1 23 0 1 852 917 191 174 32 chr9 35086020 35086301 -88989871 - MTD LTR MaLR 0 419 99 1 852 381 134 0 0 chr9 35087110 35087177 -88988995 + U4 snRNA snRNA 1 67 -78 1 852 292 241 11 78 chr9 35088247 35088259 -88987913 - B2_Mm2 SINE B2 -111 84 74 1 852 1312 227 161 45 chr9 35088259 35088767 -88987405 - RMER2 LTR ERV1 0 567 1 1 852 323 239 14 10 chr9 35088767 35088844 -88987328 - B3 SINE B2 -122 73 1 1 852 245 215 24 60 chr9 35088845 35088929 -88987243 - L1M4 LINE L1 -678 5613 5533 1 852 675 128 0 0 chr9 35088929 35089031 -88987141 - B2_Mm2 SINE B2 -92 103 2 1 852 180 0 0 0 chr9 35089050 35089070 -88987102 + (T)n Simple_repeat Simple_repeat 1 20 0 1 852 21 36 0 0 chr9 35089467 35089495 -88986677 + AT_rich Low_complexity Low_complexity 1 28 0 1 852 298 231 0 32 chr9 35089608 35089702 -88986470 - Lx6 LINE L1 -26 7434 7344 1 852 675 102 67 8 chr9 35089719 35089838 -88986334 - ORR1A4 LTR MaLR -203 126 1 1 852 669 239 63 40 chr9 35091827 35092001 -88984171 - B3A SINE B2 -15 183 6 1 852 222 333 149 26 chr9 35092188 35092382 -88983790 - MIR SINE MIR -43 219 2 1 852 274 211 18 0 chr9 35094379 35094436 -88981736 + RSINE1 SINE B4 1 58 -107 2 852 324 0 0 0 chr9 35094441 35094477 -88981695 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 852 180 234 0 0 chr9 35095985 35096032 -88980140 + CT-rich Low_complexity Low_complexity 2 48 0 2 852 189 107 0 0 chr9 35096768 35096796 -88979376 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 2 852 196 250 0 0 chr9 35097474 35097518 -88978654 - L2c LINE L2 -9 3378 3335 2 852 692 275 22 133 chr9 35098128 35098451 -88977721 - B4A SINE B4 -1 291 5 2 852 612 0 0 0 chr9 35098786 35098854 -88977318 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 852 541 254 19 52 chr9 35099369 35099523 -88976649 + B1_Mur1 SINE Alu 1 149 0 2 852 210 105 0 0 chr9 35099523 35099561 -88976611 + (A)n Simple_repeat Simple_repeat 1 38 0 2 852 383 286 71 0 chr9 35099641 35099753 -88976419 - PB1D7 SINE Alu 0 120 1 2 852 1097 279 88 36 chr9 35100874 35101618 -88974554 - L1MB8 LINE L1 -231 5947 5162 2 852 22 0 0 0 chr9 35101618 35101640 -88974532 + AT_rich Low_complexity Low_complexity 1 22 0 2 852 310 159 78 21 chr9 35101642 35101783 -88974389 + (TA)n Simple_repeat Simple_repeat 1 149 0 2 852 378 269 38 19 chr9 35101811 35101917 -88974255 - PB1D10 SINE Alu 0 117 10 2 852 236 283 81 0 chr9 35101923 35102022 -88974150 - L1MB8 LINE L1 -977 5169 5063 2 852 288 246 15 0 chr9 35102022 35102087 -88974085 + ID4_ SINE ID 1 66 -17 2 852 496 248 34 7 chr9 35102144 35102290 -88973882 - L1MB8 LINE L1 -1107 5039 4890 2 852 183 42 0 0 chr9 35102392 35102416 -88973756 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 852 1196 62 0 0 chr9 35102419 35102563 -88973609 - B1_Mus2 SINE Alu -2 145 2 2 852 1446 75 11 0 chr9 35102583 35102771 -88973401 - B2_Mm1t SINE B2 -2 191 2 2 852 738 168 12 6 chr9 35103187 35103349 -88972823 + GA-rich Low_complexity Low_complexity 2 164 0 2 852 468 0 0 0 chr9 35103380 35103432 -88972740 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 852 316 365 37 18 chr9 35103517 35103626 -88972546 + MLT1F2 LTR MaLR 1 111 -449 2 852 2135 129 34 8 chr9 35103662 35104014 -88972158 + ORR1B2 LTR MaLR 1 361 -6 2 852 1260 68 85 0 chr9 35104016 35104192 -88971980 + B2_Mm1a SINE B2 3 193 0 2 852 7852 148 71 12 chr9 35104213 35105635 -88970537 + ORR1B2-int LTR MaLR 2 1507 -2 2 852 2168 136 14 6 chr9 35105636 35105983 -88970189 + ORR1B2 LTR MaLR 10 359 -8 2 852 415 360 68 15 chr9 35106099 35106305 -88969867 + MLT1E1A LTR MaLR 420 636 -44 2 852 1915 176 84 47 chr9 35106470 35106876 -88969296 + MTC LTR MaLR 1 421 0 2 852 209 59 0 56 chr9 35106904 35106940 -88969232 + (TCTCTG)n Simple_repeat Simple_repeat 5 38 0 2 852 540 271 127 37 chr9 35107114 35107359 -88968813 - RMER20B LTR ERVK -229 398 132 2 852 816 169 90 34 chr9 35107869 35108046 -88968126 - B2_Mm2 SINE B2 -7 188 2 2 852 1118 158 16 10 chr9 35108459 35108651 -88967521 + B2_Mm2 SINE B2 1 193 -2 2 852 571 221 71 58 chr9 35108810 35108964 -88967208 + RSINE1 SINE B4 3 158 -7 2 852 26 64 0 0 chr9 35108966 35109013 -88967159 + AT_rich Low_complexity Low_complexity 1 47 0 2 852 189 0 0 0 chr9 35109658 35109679 -88966493 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 2 852 237 211 0 0 chr9 35110579 35110631 -88965541 + GA-rich Low_complexity Low_complexity 1 52 0 2 852 474 140 0 0 chr9 35110732 35110832 -88965340 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 852 809 226 65 0 chr9 35110832 35111018 -88965154 - B3 SINE B2 -14 202 5 2 852 684 225 0 0 chr9 35111261 35111421 -88964751 + A-rich Low_complexity Low_complexity 1 160 0 2 852 339 243 13 13 chr9 35111707 35111782 -88964390 - ID4_ SINE ID 0 83 9 2 852 298 274 152 33 chr9 35111879 35112030 -88964142 - L3 LINE CR1 -355 4134 3966 2 852 314 207 0 24 chr9 35112185 35112269 -88963903 + (TATG)n Simple_repeat Simple_repeat 2 83 0 2 852 200 346 24 36 chr9 35112308 35112392 -88963780 - L3 LINE CR1 -737 3752 3670 2 852 2737 92 8 15 chr9 35112790 35113194 -88962978 + GSAT_MM Satellite Satellite 1 400 0 2 852 428 0 19 0 chr9 35113199 35113251 -88962921 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 852 2447 77 3 58 chr9 35113320 35113666 -88962506 + ORR1A2 LTR MaLR 1 327 0 2 852 31 58 0 0 chr9 35114137 35114189 -88961983 + AT_rich Low_complexity Low_complexity 1 52 0 2 852 259 25 24 24 chr9 35114260 35114301 -88961871 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2 852 306 0 0 0 chr9 35114302 35114336 -88961836 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 852 283 273 75 15 chr9 35114337 35114403 -88961769 - RSINE1 SINE B4 -16 149 80 2 852 594 296 14 7 chr9 35114403 35114549 -88961623 + RSINE1 SINE B4 3 149 -16 2 852 203 197 89 101 chr9 35115040 35115119 -88961053 - MIR3 SINE MIR -130 78 1 2 852 489 235 17 0 chr9 35115361 35115480 -88960692 + MER121 Unknown Unknown 133 253 -159 2 852 323 250 9 97 chr9 35115965 35116092 -88960080 - MLT1A1 LTR MaLR -1 407 250 2 852 263 307 45 0 chr9 35116628 35116716 -88959456 - ID_B1 SINE B4 0 224 133 2 852 674 218 140 22 chr9 35116732 35116910 -88959262 - ID_B1 SINE B4 -23 201 3 2 852 180 247 99 49 chr9 35117311 35117392 -88958780 + L2c LINE L2 3216 3300 -87 2 852 1355 269 92 13 chr9 35118712 35119092 -88957080 + MTD LTR MaLR 10 419 0 2 852 234 297 0 11 chr9 35119590 35119682 -88956490 + (CAT)n Simple_repeat Simple_repeat 2 92 0 2 852 423 0 0 0 chr9 35121825 35121872 -88954300 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 852 261 0 0 0 chr9 35122121 35122150 -88954022 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 852 216 0 0 0 chr9 35122150 35122173 -88953999 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 852 219 276 155 0 chr9 35122539 35122597 -88953575 - B1F SINE Alu -10 139 73 2 852 200 167 0 0 chr9 35122749 35122779 -88953393 - MIRb SINE MIR -203 65 36 2 852 394 100 204 26 chr9 35123073 35123186 -88952986 - Lx9 LINE L1 -90 7554 7422 2 852 322 176 13 39 chr9 35123190 35123267 -88952905 + Lx9 LINE L1 7570 7644 0 2 852 979 125 0 20 chr9 35123909 35124056 -88952116 - B1_Mur4 SINE Alu -1 149 6 2 852 685 222 7 34 chr9 35127136 35127285 -88948887 - B1_Mus1 SINE Alu 0 148 4 2 853 285 267 29 29 chr9 35127371 35127475 -88948697 + MIR SINE MIR 9 112 -150 2 853 714 300 76 115 chr9 35127518 35128054 -88948118 + RMER20B LTR ERVK 30 602 -25 2 853 242 375 31 20 chr9 35128041 35128139 -88948033 + RMER20B LTR ERVK 504 602 -25 2 853 182 242 103 29 chr9 35128142 35128210 -88947962 + MIR SINE MIR 111 183 -79 2 853 218 213 0 0 chr9 35128367 35128414 -88947758 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 853 568 289 71 19 chr9 35128462 35128617 -88947555 + ID_B1 SINE B4 1 163 -61 2 853 793 251 84 139 chr9 35128627 35129057 -88947115 - RMER10A LTR ERVL -25 417 12 2 853 213 322 45 22 chr9 35129051 35129072 -88947100 + B1_Mur1 SINE Alu 57 147 -2 2 853 334 250 0 0 chr9 35129072 35129140 -88947032 + ID_B1 SINE B4 157 224 0 2 853 226 200 44 0 chr9 35129330 35129375 -88946797 + B1F SINE Alu 103 149 0 2 853 667 221 102 10 chr9 35129380 35129577 -88946595 + B3 SINE B2 2 216 0 2 853 277 147 21 12 chr9 35130972 35131030 -88945142 + MIRm SINE MIR 108 163 -99 2 853 633 279 103 25 chr9 35131247 35131565 -88944607 + ORR1E LTR MaLR 7 370 -9 2 853 334 224 14 132 chr9 35133493 35133637 -88942535 + L1MEd LINE L1 1244 1370 -5263 2 853 393 285 74 26 chr9 35133641 35133952 -88942220 + L1MEd LINE L1 1304 1670 -4963 2 853 261 0 0 0 chr9 35133954 35133983 -88942189 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 853 997 218 93 43 chr9 35135058 35135336 -88940836 + B4A SINE B4 1 292 0 2 853 203 203 0 13 chr9 35135359 35135434 -88940738 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 853 191 243 0 0 chr9 35135589 35135626 -88940546 + L2c LINE L2 3301 3337 -50 2 853 1658 36 0 5 chr9 35135804 35135998 -88940174 + B2_Mm1t SINE B2 1 193 0 2 853 250 211 41 27 chr9 35138584 35138730 -88937442 + GA-rich Low_complexity Low_complexity 2 149 0 2 853 540 0 0 0 chr9 35139458 35139518 -88936654 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 853 471 313 36 29 chr9 35140253 35140391 -88935781 + RSINE1 SINE B4 9 147 -18 2 853 315 0 0 0 chr9 35140391 35140426 -88935746 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 853 207 0 0 0 chr9 35140426 35140448 -88935724 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 853 465 19 0 0 chr9 35141137 35141191 -88934981 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 853 245 318 41 90 chr9 35141342 35141487 -88934685 - Charlie15a DNA MER1_type -2 222 85 2 853 408 232 33 44 chr9 35141615 35141705 -88934467 - PB1D7 SINE Alu -2 118 30 2 853 248 307 52 74 chr9 35141633 35141814 -88934358 - ID_B1 SINE B4 -45 179 9 2 853 735 240 43 21 chr9 35141895 35142082 -88934090 - B3 SINE B2 -2 214 24 2 853 241 352 18 27 chr9 35144365 35144476 -88931696 - MIR SINE MIR -66 142 33 2 853 448 294 24 8 chr9 35144771 35144898 -88931274 - ID_B1 SINE B4 -8 216 88 2 853 201 108 0 0 chr9 35144924 35144961 -88931211 + (T)n Simple_repeat Simple_repeat 1 37 0 2 853 1132 75 0 0 chr9 35144961 35145107 -88931065 - B1_Mus2 SINE Alu 0 147 2 2 853 1193 199 0 9 chr9 35145138 35145351 -88930821 - B3 SINE B2 -5 211 1 2 853 180 0 0 0 chr9 35145369 35145389 -88930783 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 2 853 399 41 0 0 chr9 35145391 35145440 -88930732 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 853 639 268 0 0 chr9 35145480 35145607 -88930565 - RSINE1 SINE B4 -37 128 2 2 853 336 48 0 0 chr9 35146308 35146350 -88929822 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 853 186 254 78 16 chr9 35146944 35147008 -88929164 - MIRb SINE MIR -115 153 86 2 853 568 250 83 63 chr9 35147275 35147480 -88928692 - MARNA DNA Mariner -155 431 223 2 853 213 200 0 0 chr9 35147782 35147822 -88928350 + (CCCCAG)n Simple_repeat Simple_repeat 4 43 0 3 853 316 314 79 46 chr9 35148946 35149158 -88927014 - MIR3 SINE MIR 0 208 1 3 853 208 330 35 16 chr9 35149266 35149383 -88926789 - MIRc SINE MIR -145 123 6 3 853 375 89 0 0 chr9 35150687 35150743 -88925429 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 853 271 310 0 14 chr9 35150779 35150851 -88925321 - PB1D10 SINE Alu -2 115 45 3 853 865 317 67 44 chr9 35150870 35151213 -88924959 - MLT1F2 LTR MaLR -34 526 176 3 853 334 283 0 0 chr9 35151213 35151326 -88924846 + GA-rich Low_complexity Low_complexity 2 114 0 3 853 443 337 85 15 chr9 35151327 35151526 -88924646 - MLT1F2 LTR MaLR -341 219 7 3 853 33 43 0 0 chr9 35151590 35151637 -88924535 + AT_rich Low_complexity Low_complexity 1 47 0 3 853 228 135 0 0 chr9 35151665 35151702 -88924470 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 853 365 312 86 23 chr9 35153489 35153617 -88922555 - MIRb SINE MIR -23 245 110 3 853 237 216 20 0 chr9 35153649 35153700 -88922472 + ID4 SINE ID 6 57 -26 3 853 367 274 0 78 chr9 35153716 35153831 -88922341 - PB1D10 SINE Alu -7 110 5 3 853 465 34 0 0 chr9 35153888 35153947 -88922225 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 853 267 221 68 23 chr9 35154406 35154494 -88921678 - Lx8 LINE L1 -2 7471 7380 3 853 1257 266 37 48 chr9 35154581 35154960 -88921212 - Lx8 LINE L1 -326 7147 6773 3 853 195 345 83 0 chr9 35155151 35155235 -88920937 - MIR SINE MIR -73 189 99 3 853 558 0 0 0 chr9 35155282 35155344 -88920828 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 853 565 289 66 106 chr9 35155787 35156089 -88920083 - ORR1E LTR MaLR -5 354 65 3 853 202 321 197 0 chr9 35156687 35156824 -88919348 + MIR3 SINE MIR 33 196 -12 3 853 951 284 111 27 chr9 35156889 35157295 -88918877 - L1MA8 LINE L1 -4 6287 5848 3 853 207 139 0 0 chr9 35157710 35157746 -88918426 + (GGAGA)n Simple_repeat Simple_repeat 4 39 0 3 853 696 212 35 94 chr9 35158304 35158507 -88917665 + RLTR11B LTR ERVK 52 242 -211 3 853 636 229 18 189 chr9 35158506 35158786 -88917386 + RLTR11B LTR ERVK 200 431 -22 3 853 274 297 19 29 chr9 35159187 35159291 -88916881 + MER121 Unknown Unknown 126 228 -184 3 853 340 335 45 49 chr9 35160552 35160816 -88915356 + L2c LINE L2 2665 2927 -492 3 853 519 372 64 60 chr9 35160880 35161349 -88914823 - MLT2B3 LTR ERVL -81 473 3 3 853 279 351 88 52 chr9 35161380 35161723 -88914449 + L2c LINE L2 2972 3326 -61 3 853 459 290 18 53 chr9 35161780 35161951 -88914221 - MIR SINE MIR 0 262 98 3 853 605 190 0 62 chr9 35161958 35162087 -88914085 - B1_Mur3 SINE Alu 0 149 29 3 853 216 86 0 0 chr9 35162099 35162134 -88914038 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 3 853 22 0 0 0 chr9 35162424 35162446 -88913726 + GC_rich Low_complexity Low_complexity 1 22 0 3 853 1038 232 30 26 chr9 35163095 35163360 -88912812 + MER2 DNA MER2_type 79 344 -1 3 853 3552 15 5 0 chr9 35163495 35163889 -88912283 + MTA_Mm LTR MaLR 1 396 0 3 853 9287 38 2 1 chr9 35163889 35164986 -88911186 + MTA_Mm-int LTR MaLR 1 1098 0 3 853 3552 15 5 0 chr9 35164986 35165380 -88910792 + MTA_Mm LTR MaLR 1 396 0 3 853 312 27 0 0 chr9 35165442 35165479 -88910693 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 853 255 347 155 24 chr9 35165521 35165728 -88910444 - MIRb SINE MIR -34 234 1 3 853 252 294 63 32 chr9 35166172 35166267 -88909905 + Lx8 LINE L1 7274 7371 -102 3 853 1376 80 27 0 chr9 35166447 35166634 -88909538 + B2_Mm2 SINE B2 1 192 -3 3 853 672 224 65 80 chr9 35166697 35166896 -88909276 - B3A SINE B2 0 198 3 3 853 225 0 0 0 chr9 35167822 35167847 -88908325 + (CTCA)n Simple_repeat Simple_repeat 2 26 0 3 853 261 283 27 20 chr9 35167970 35168064 -88908108 + ID4 SINE ID 8 100 -52 3 853 192 355 9 27 chr9 35170023 35170133 -88906039 - MIRb SINE MIR -46 222 115 3 853 685 207 7 7 chr9 35172440 35172576 -88903596 + MLT1A0 LTR MaLR 10 145 -220 3 853 448 284 57 43 chr9 35172585 35172725 -88903447 + ID_B1 SINE B4 81 222 -2 3 853 460 273 132 13 chr9 35172759 35172911 -88903261 + B4A SINE B4 123 292 0 3 853 258 105 0 0 chr9 35172918 35172956 -88903216 + (CTAA)n Simple_repeat Simple_repeat 2 39 0 3 853 239 274 25 76 chr9 35174159 35174238 -88901934 - MTEa LTR MaLR -99 280 206 3 853 432 0 0 0 chr9 35174693 35174741 -88901431 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 853 336 270 81 0 chr9 35175316 35175427 -88900745 - PB1D7 SINE Alu 0 120 1 3 853 358 320 114 69 chr9 35175564 35175809 -88900363 - MLT1E3 LTR MaLR -70 554 299 3 853 187 287 62 36 chr9 35176007 35176119 -88900053 - L2 LINE L2 -508 2911 2797 3 853 417 39 0 0 chr9 35177067 35177118 -88899054 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 853 1389 281 83 0 chr9 35177359 35177697 -88898475 - MTEa LTR MaLR -13 366 1 3 853 253 327 110 32 chr9 35178041 35178196 -88897976 - LTR33 LTR ERVL -348 167 1 3 853 422 335 10 40 chr9 35178289 35178488 -88897684 + Charlie19a DNA Charlie 167 359 -27 3 853 218 296 0 0 chr9 35179430 35179484 -88896688 - MIRm SINE MIR -139 137 84 3 853 222 246 100 14 chr9 35180742 35180812 -88895360 - MIRc SINE MIR -25 243 168 3 853 654 201 97 0 chr9 35181380 35181514 -88894658 + B1F SINE Alu 3 149 0 3 853 288 275 37 24 chr9 35181524 35181606 -88894566 + ID4 SINE ID 1 83 0 3 853 682 217 7 14 chr9 35181744 35181884 -88894288 + B1F SINE Alu 1 139 -10 3 853 569 14 0 14 chr9 35181884 35181955 -88894217 + (GGGAA)n Simple_repeat Simple_repeat 4 73 0 3 853 318 129 48 0 chr9 35182190 35182252 -88893920 - MTD LTR MaLR 0 419 355 3 853 3258 243 60 117 chr9 35182261 35183385 -88892787 - RMER1A Other Other -6 1024 6 3 853 1495 259 11 47 chr9 35183361 35183725 -88892447 - RMER1A Other Other -575 455 105 3 853 1021 237 208 37 chr9 35183726 35184036 -88892136 - MTD LTR MaLR -56 363 1 3 853 4440 117 13 38 chr9 35184223 35184269 -88891903 + Lx4A LINE L1 6388 6433 -625 3 853 1171 58 0 0 chr9 35184269 35184408 -88891764 + B1_Mus1 SINE Alu 1 139 -9 3 853 216 0 0 0 chr9 35184408 35184432 -88891740 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 853 4440 117 13 38 chr9 35184432 35185071 -88891101 + Lx4A LINE L1 6434 7056 -2 3 853 407 288 35 18 chr9 35185253 35185366 -88890806 - PB1D10 SINE Alu -1 116 2 3 853 197 257 97 48 chr9 35187310 35187417 -88888755 + MIRm SINE MIR 56 172 -96 3 853 1267 252 68 21 chr9 35187432 35187591 -88888581 + Lx7 LINE L1 6804 6965 -731 3 853 2384 84 15 12 chr9 35187591 35187917 -88888255 - ORR1A2 LTR MaLR 0 327 1 3 853 1267 252 68 21 chr9 35187917 35188093 -88888079 + Lx7 LINE L1 6966 7155 -541 3 853 375 264 120 77 chr9 35188737 35188946 -88887226 + HAL1 LINE L1 116 333 -2174 3 853 1330 227 179 11 chr9 35189509 35189866 -88886306 + MTD LTR MaLR 3 419 0 3 853 399 291 93 44 chr9 35189883 35190066 -88886106 + HAL1 LINE L1 959 1150 -1357 3 853 303 189 0 0 chr9 35190069 35190122 -88886050 + 4.5SRNA scRNA scRNA 35 87 -7 3 853 342 0 0 0 chr9 35190127 35190165 -88886007 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 853 1257 313 77 71 chr9 35190194 35190658 -88885514 + HAL1 LINE L1 1222 1714 -793 3 853 291 28 0 0 chr9 35190658 35190694 -88885478 + (CAA)n Simple_repeat Simple_repeat 1 36 0 3 853 1257 313 77 71 chr9 35190694 35191296 -88884876 + HAL1 LINE L1 1715 2294 -213 3 853 249 199 97 0 chr9 35191362 35191428 -88884744 + PB1D10 SINE Alu 5 80 -69 3 853 504 48 0 0 chr9 35191454 35191517 -88884655 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 3 853 180 0 0 0 chr9 35191661 35191681 -88884491 + (A)n Simple_repeat Simple_repeat 1 20 0 3 853 17990 21 0 1 chr9 35191950 35194689 -88881483 - L1Md_T LINE L1 0 6582 3848 3 853 920 250 168 22 chr9 35194746 35195110 -88881062 - MTD LTR MaLR -2 417 1 3 853 253 368 0 0 chr9 35195141 35195209 -88880963 + ID4_ SINE ID 9 76 -7 3 853 387 0 0 0 chr9 35195216 35195259 -88880913 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 853 24 0 0 0 chr9 35195298 35195322 -88880850 + AT_rich Low_complexity Low_complexity 1 24 0 3 853 21 36 0 0 chr9 35195347 35195375 -88880797 + AT_rich Low_complexity Low_complexity 1 28 0 3 853 784 261 106 8 chr9 35195417 35195672 -88880500 - B4A SINE B4 -10 282 3 3 853 571 223 9 18 chr9 35195745 35195859 -88880313 - PB1D9 SINE Alu 0 120 8 3 853 4218 13 47 0 chr9 35195949 35196420 -88879752 - MT2_Mm LTR ERVL 0 493 1 3 853 319 0 0 0 chr9 35196420 35196458 -88879714 - MERVL-int LTR ERVL 0 5485 5448 3 853 393 144 58 46 chr9 35196458 35196545 -88879627 - ORR1A3-int LTR MaLR -1323 640 553 3 853 48697 18 0 1 chr9 35196545 35201908 -88874264 - MERVL-int LTR ERVL -125 5360 1 3 853 4159 15 47 2 chr9 35201908 35202380 -88873792 - MT2_Mm LTR ERVL 0 493 1 3 853 942 260 104 50 chr9 35202410 35202530 -88873642 - MER92B LTR ERV1 -141 495 380 3 853 2453 90 9 6 chr9 35202530 35202855 -88873317 + ORR1A3 LTR MaLR 1 326 0 3 853 942 260 104 50 chr9 35202855 35203072 -88873100 - MER92B LTR ERV1 -257 379 141 3 853 2131 180 51 27 chr9 35203072 35203483 -88872689 + MTC LTR MaLR 1 421 0 3 853 942 260 104 50 chr9 35203483 35203528 -88872644 - MER92B LTR ERV1 -496 140 91 3 853 279 0 0 0 chr9 35203533 35203564 -88872608 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 853 271 337 58 40 chr9 35203872 35204045 -88872127 - L4 LINE RTE -975 1054 879 3 853 207 345 43 22 chr9 35204065 35204157 -88872015 - L4 LINE RTE -1256 773 680 3 853 193 367 56 0 chr9 35204461 35204551 -88871621 - L4 LINE RTE -669 1360 1266 3 853 243 0 0 0 chr9 35204593 35204620 -88871552 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 3 853 796 162 66 7 chr9 35204620 35204750 -88871422 - B1_Mus1 SINE Alu -8 140 3 3 853 324 281 11 43 chr9 35204750 35204843 -88871329 - ID_B1 SINE B4 -41 183 94 3 853 2590 78 0 0 chr9 35205147 35205468 -88870704 + ORR1A2 LTR MaLR 5 325 -2 3 853 482 370 124 9 chr9 35205488 35205810 -88870362 + L4 LINE RTE 1121 1479 -550 3 853 391 248 28 153 chr9 35206179 35206305 -88869867 + PB1 SINE Alu 12 120 -7 3 853 345 340 7 34 chr9 35206582 35206728 -88869444 + LTR88b LTR Gypsy? 648 789 -48 3 853 448 351 80 16 chr9 35206774 35206962 -88869210 + LTR16C LTR ERVL 78 277 -212 3 853 214 263 18 0 chr9 35207395 35207452 -88868720 + CT-rich Low_complexity Low_complexity 4 61 0 4 853 213 356 78 50 chr9 35207459 35207678 -88868494 + L4 LINE RTE 1800 2024 -5 3 853 312 222 0 0 chr9 35207862 35207934 -88868238 + A-rich Low_complexity Low_complexity 1 72 0 4 853 1187 34 7 14 chr9 35209227 35209375 -88866797 - B1_Mus2 SINE Alu 0 147 1 4 853 234 0 0 0 chr9 35209418 35209444 -88866728 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 853 315 0 0 0 chr9 35209444 35209478 -88866694 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 853 465 19 0 0 chr9 35209874 35209928 -88866244 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 853 188 292 97 0 chr9 35210910 35210982 -88865190 + MIR SINE MIR 66 144 -118 4 853 316 288 173 27 chr9 35211144 35211294 -88864878 + MER20 DNA MER1_type 47 218 -1 4 853 411 264 38 60 chr9 35211363 35211496 -88864676 + RSINE1 SINE B4 21 150 -15 4 853 635 220 73 23 chr9 35211720 35211897 -88864275 + B3A SINE B2 3 188 -10 4 853 243 0 0 0 chr9 35212048 35212075 -88864097 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 853 268 265 29 0 chr9 35212132 35212200 -88863972 - MIR SINE MIR -79 183 114 4 853 941 145 7 7 chr9 35212200 35212346 -88863826 + B1_Mus1 SINE Alu 3 148 0 4 853 188 34 0 33 chr9 35212936 35212966 -88863206 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 4 853 427 212 11 34 chr9 35214304 35214392 -88861780 + RSINE1 SINE B4 2 87 -78 4 853 278 281 9 80 chr9 35214392 35214416 -88861756 + B3 SINE B2 1 104 -112 4 853 504 0 0 0 chr9 35214426 35214482 -88861690 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 853 408 343 28 0 chr9 35214862 35215005 -88861167 + MIR SINE MIR 6 152 -110 4 853 690 248 21 0 chr9 35215125 35215270 -88860902 - B1F SINE Alu -1 148 1 4 853 943 234 19 14 chr9 35215547 35215759 -88860413 - B3 SINE B2 -3 213 1 4 853 236 277 147 21 chr9 35217252 35217383 -88858789 + MIR SINE MIR 12 164 -104 4 853 424 317 0 19 chr9 35217592 35217695 -88858477 + PB1D10 SINE Alu 7 107 -10 4 853 412 236 59 85 chr9 35217850 35218003 -88858169 - MLT1A0 LTR MaLR -213 152 4 4 853 253 345 8 110 chr9 35219335 35219462 -88856710 - MIRm SINE MIR -158 118 5 4 853 282 179 0 0 chr9 35219925 35219981 -88856191 + GA-rich Low_complexity Low_complexity 3 58 0 4 853 391 301 46 56 chr9 35221059 35221256 -88854916 + ORR1E LTR MaLR 6 200 -159 4 853 225 269 15 24 chr9 35221540 35221624 -88854548 + B1_Mm SINE Alu 33 124 -3 4 853 569 261 59 0 chr9 35221677 35221830 -88854342 - L1M2 LINE L1 -489 5802 5641 4 853 360 236 7 115 chr9 35222058 35222197 -88853975 - L1MA4 LINE L1 -382 5918 5795 4 853 665 40 40 0 chr9 35222203 35222304 -88853868 + (TG)n Simple_repeat Simple_repeat 2 106 0 4 853 2162 195 52 39 chr9 35222610 35222711 -88853461 - RLTR20A LTR ERVK 0 541 440 4 853 501 17 0 0 chr9 35222711 35222769 -88853403 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 853 2162 195 52 39 chr9 35222769 35223200 -88852972 - RLTR20A LTR ERVK -102 439 3 4 853 537 252 15 7 chr9 35223264 35223400 -88852772 - L1MA4 LINE L1 -777 5523 5387 4 853 209 320 48 0 chr9 35223481 35223584 -88852588 + MIR SINE MIR 9 116 -146 4 853 2698 188 34 16 chr9 35223689 35223780 -88852392 - RLTR20D LTR ERVK 0 568 477 4 853 495 0 0 0 chr9 35223780 35223835 -88852337 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 853 2698 188 34 16 chr9 35223835 35224301 -88851871 - RLTR20D LTR ERVK -92 476 3 4 853 535 198 9 19 chr9 35224501 35224609 -88851563 + PB1D10 SINE Alu 11 117 0 4 853 194 338 173 13 chr9 35225086 35225323 -88850849 + L2 LINE L2 1060 1334 -2085 4 853 1039 177 229 3 chr9 35225817 35226118 -88850054 - ORR1D1 LTR MaLR 0 374 6 4 853 438 278 16 16 chr9 35226278 35226406 -88849766 + ORR1E LTR MaLR 1 128 -231 4 853 565 112 29 0 chr9 35227993 35228104 -88848068 + B1_Mus2 SINE Alu 22 140 -9 4 853 206 32 0 31 chr9 35228104 35228136 -88848036 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 853 182 37 0 36 chr9 35228679 35228707 -88847465 + (CGGGG)n Simple_repeat Simple_repeat 2 28 0 4 853 27 29 0 0 chr9 35228983 35229017 -88847155 + GC_rich Low_complexity Low_complexity 1 34 0 4 853 26 0 0 0 chr9 35229107 35229133 -88847039 + GC_rich Low_complexity Low_complexity 1 26 0 4 853 240 35 0 0 chr9 35231659 35231688 -88844484 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 4 853 336 232 171 45 chr9 35233768 35233944 -88842228 + MIR SINE MIR 59 256 -6 4 853 231 222 0 0 chr9 35234534 35234588 -88841584 + A-rich Low_complexity Low_complexity 1 54 0 4 853 21 0 0 0 chr9 35234595 35234616 -88841556 + AT_rich Low_complexity Low_complexity 1 21 0 4 853 207 0 0 0 chr9 35235174 35235197 -88840975 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 853 534 223 225 17 chr9 35235538 35235716 -88840456 - B3 SINE B2 0 216 2 4 853 212 329 14 0 chr9 35235847 35235917 -88840255 + L3 LINE CR1 4392 4462 -27 4 853 210 71 0 0 chr9 35235989 35236017 -88840155 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 853 748 75 0 0 chr9 35236597 35236704 -88839468 + B1_Mm SINE Alu 40 146 -1 4 853 194 0 0 37 chr9 35236711 35236738 -88839434 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 853 572 260 129 6 chr9 35237308 35237478 -88838694 - B3A SINE B2 -5 193 3 4 853 3359 96 62 28 chr9 35237690 35238192 -88837980 + Lx LINE L1 5996 6514 -140 4 853 237 258 39 58 chr9 35238224 35238327 -88837845 + ORR1E LTR MaLR 98 198 -161 4 853 314 234 126 93 chr9 35239742 35239893 -88836279 - RSINE1 SINE B4 -4 161 6 4 853 4133 99 53 28 chr9 35240233 35240876 -88835296 + Lx LINE L1 5996 6654 0 4 853 297 0 0 0 chr9 35241636 35241669 -88834503 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 853 254 291 63 9 chr9 35245551 35245662 -88830510 - L2a LINE L2 -1 3425 3309 4 853 409 295 27 27 chr9 35247769 35247919 -88828253 - RSINE1 SINE B4 -2 163 14 4 853 204 149 0 0 chr9 35247982 35248029 -88828143 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 853 332 276 0 75 chr9 35248045 35248139 -88828033 - RSINE1 SINE B4 -77 88 2 4 853 434 248 78 31 chr9 35248616 35248745 -88827427 + MLT1A1 LTR MaLR 268 402 -6 4 853 312 27 0 0 chr9 35248768 35248805 -88827367 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 853 340 269 57 50 chr9 35248829 35248970 -88827202 - RSINE1 SINE B4 -16 149 8 4 853 198 103 0 0 chr9 35249066 35249095 -88827077 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 4 853 987 85 43 0 chr9 35249355 35249496 -88826676 + B1_Mus2 SINE Alu 1 147 0 4 853 206 32 0 31 chr9 35249496 35249528 -88826644 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 4 853 459 52 0 0 chr9 35252977 35253035 -88823137 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 853 674 220 0 8 chr9 35253994 35254127 -88822045 + B1_Mus2 SINE Alu 1 132 -15 4 853 483 107 0 0 chr9 35255145 35255220 -88820952 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 853 749 138 8 0 chr9 35255762 35255885 -88820287 + B2_Mm2 SINE B2 1 124 -71 4 853 261 292 41 20 chr9 35255928 35256026 -88820146 + L1M5 LINE L1 5605 5704 -420 4 853 727 176 16 105 chr9 35256186 35256376 -88819796 + ORR1B2 LTR MaLR 1 173 -194 4 853 1155 61 0 0 chr9 35256913 35257060 -88819112 + B1_Mus2 SINE Alu 1 147 0 4 853 480 269 69 8 chr9 35257115 35257246 -88818926 + B1F1 SINE Alu 2 140 -9 4 853 223 291 0 0 chr9 35257922 35257977 -88818195 + MIRm SINE MIR 217 271 -5 4 854 351 0 0 0 chr9 35259834 35259873 -88816299 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 854 767 174 21 21 chr9 35259921 35260062 -88816110 + B1_Mur3 SINE Alu 2 142 -7 4 854 411 208 45 27 chr9 35261625 35261748 -88814424 + B1F1 SINE Alu 3 119 -1 4 854 557 259 56 22 chr9 35262703 35262881 -88813291 - ID_B1 SINE B4 -40 184 1 4 854 23 0 0 0 chr9 35263155 35263178 -88812994 + AT_rich Low_complexity Low_complexity 1 23 0 4 854 913 255 0 14 chr9 35263185 35263392 -88812780 - B3 SINE B2 0 216 13 4 854 684 235 122 5 chr9 35263460 35263648 -88812524 - B3 SINE B2 -6 210 1 4 854 708 118 24 0 chr9 35264572 35264699 -88811473 + (TG)n Simple_repeat Simple_repeat 2 131 0 4 854 408 40 0 0 chr9 35265461 35265511 -88810661 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 4 854 472 229 106 8 chr9 35265539 35265662 -88810510 + B3 SINE B2 70 204 -12 4 854 490 254 160 78 chr9 35266363 35266632 -88809540 - B4A SINE B4 0 292 2 4 854 21 0 0 0 chr9 35266644 35266665 -88809507 + AT_rich Low_complexity Low_complexity 1 21 0 4 854 270 273 102 88 chr9 35266669 35266685 -88809487 - L1M5 LINE L1 -639 5485 5470 4 854 1166 69 0 0 chr9 35266685 35266830 -88809342 - B1_Mus2 SINE Alu 0 147 3 4 854 270 273 102 88 chr9 35266830 35267018 -88809154 - L1M5 LINE L1 -655 5469 5278 4 854 319 274 168 75 chr9 35267034 35267240 -88808932 + L1M5 LINE L1 2743 2964 -3182 4 854 2165 145 68 5 chr9 35267240 35267636 -88808536 - MTC LTR MaLR 0 421 1 4 854 319 274 168 75 chr9 35267636 35267906 -88808266 + L1M5 LINE L1 2965 3263 -2883 4 854 279 326 58 68 chr9 35268191 35268382 -88807790 - ORR1E LTR MaLR -169 190 2 4 854 382 275 191 55 chr9 35268383 35268853 -88807319 + L1M5 LINE L1 3397 3930 -2216 4 854 26 30 0 0 chr9 35269062 35269095 -88807077 + AT_rich Low_complexity Low_complexity 1 33 0 4 854 412 291 0 18 chr9 35269343 35269455 -88806717 + ID_B1 SINE B4 94 203 -21 4 854 384 158 0 0 chr9 35269469 35269545 -88806627 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 854 300 53 0 0 chr9 35269538 35269576 -88806596 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 854 388 236 0 0 chr9 35270640 35270712 -88805460 + B1_Mur3 SINE Alu 66 137 -12 5 854 400 309 57 0 chr9 35271161 35271284 -88804888 - RSINE1 SINE B4 -8 157 28 5 854 226 321 52 15 chr9 35273225 35273361 -88802811 + L1MC4 LINE L1 6568 6708 -1334 5 854 438 290 19 0 chr9 35274118 35274225 -88801947 + PB1D7 SINE Alu 11 119 -1 5 854 21 0 0 0 chr9 35274242 35274263 -88801909 + AT_rich Low_complexity Low_complexity 1 21 0 5 854 697 281 84 13 chr9 35274485 35274723 -88801449 + MER47B DNA MER2_type 2 256 -162 5 854 401 347 104 0 chr9 35276085 35276258 -88799914 - Lx8 LINE L1 -146 7327 7137 5 854 438 253 88 33 chr9 35276258 35276449 -88799723 - MTEb LTR MaLR -137 242 21 5 854 331 322 16 0 chr9 35276944 35277065 -88799107 - RSINE1 SINE B4 -12 153 31 5 854 201 195 0 0 chr9 35277975 35278016 -88798156 + CT-rich Low_complexity Low_complexity 2 42 0 5 854 183 260 48 72 chr9 35279079 35279162 -88797010 - L2a LINE L2 -52 3374 3294 5 854 1389 83 10 25 chr9 35279995 35280192 -88795980 - B2_Mm2 SINE B2 0 195 2 5 854 362 175 32 13 chr9 35280365 35280521 -88795651 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 5 854 299 243 7 0 chr9 35281270 35281406 -88794766 + (TG)n Simple_repeat Simple_repeat 2 138 0 5 854 399 227 0 0 chr9 35281415 35281490 -88794682 - ID4 SINE ID -6 77 3 5 854 300 300 0 0 chr9 35282284 35282354 -88793818 + RSINE1 SINE B4 67 136 -29 5 854 754 195 44 31 chr9 35282470 35282629 -88793543 + U1 snRNA snRNA 2 162 -3 5 854 180 77 0 0 chr9 35284676 35284702 -88791470 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 854 198 71 0 0 chr9 35284913 35284941 -88791231 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 5 854 967 67 0 0 chr9 35284941 35285075 -88791097 - B1_Mus2 SINE Alu 0 147 14 5 854 360 225 0 0 chr9 35285085 35285156 -88791016 - ID4_ SINE ID -11 72 2 5 854 219 273 0 0 chr9 35287560 35287615 -88788557 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 854 786 254 68 19 chr9 35287743 35287948 -88788224 - B3 SINE B2 0 216 2 5 854 351 0 0 0 chr9 35289544 35289583 -88786589 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 854 252 0 0 0 chr9 35291946 35291974 -88784198 + (CAT)n Simple_repeat Simple_repeat 1 28 0 5 854 525 261 155 0 chr9 35291978 35292120 -88784052 - ID_B1 SINE B4 -15 209 46 5 854 533 218 20 66 chr9 35292551 35292703 -88783469 + B3A SINE B2 38 182 -16 5 854 226 288 40 14 chr9 35292748 35292822 -88783350 + ID4 SINE ID 6 81 -2 5 854 257 267 113 58 chr9 35293017 35293186 -88782986 - MLT1A0 LTR MaLR -228 180 15 5 854 2206 68 105 16 chr9 35293517 35293831 -88782341 - Lx3_Mus LINE L1 0 7009 6668 5 854 203 61 0 29 chr9 35293969 35294003 -88782169 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 854 21 0 0 0 chr9 35294305 35294326 -88781846 + AT_rich Low_complexity Low_complexity 1 21 0 5 854 1166 113 21 11 chr9 35295996 35296184 -88779988 - B2_Mm2 SINE B2 -4 191 2 5 854 289 269 26 0 chr9 35297400 35297478 -88778694 - ID4_ SINE ID -1 82 3 5 854 180 0 0 0 chr9 35297986 35298006 -88778166 + (A)n Simple_repeat Simple_repeat 1 20 0 5 854 195 42 0 0 chr9 35299837 35299861 -88776311 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 5 854 1206 74 0 0 chr9 35299923 35300085 -88776087 + (TTTC)n Simple_repeat Simple_repeat 1 162 0 5 854 533 176 9 0 chr9 35300085 35300193 -88775979 + CT-rich Low_complexity Low_complexity 1 109 0 5 854 723 194 43 0 chr9 35300236 35300375 -88775797 + B1_Mur3 SINE Alu 5 149 0 5 854 384 40 0 0 chr9 35300388 35300438 -88775734 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 854 394 246 32 47 chr9 35300493 35300617 -88775555 + PB1D10 SINE Alu 6 123 -4 5 854 25 0 0 0 chr9 35300705 35300730 -88775442 + AT_rich Low_complexity Low_complexity 1 25 0 5 854 377 198 12 12 chr9 35300730 35300812 -88775360 + PB1D10 SINE Alu 1 82 -35 5 854 230 343 65 19 chr9 35301443 35301550 -88774622 + B1F SINE Alu 3 114 -3 5 854 279 220 0 0 chr9 35302134 35302225 -88773947 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 854 369 252 40 0 chr9 35302415 35302514 -88773658 + B1F SINE Alu 46 148 -1 5 854 300 269 0 37 chr9 35302530 35302611 -88773561 + ID4 SINE ID 2 79 -4 5 854 319 229 0 135 chr9 35303264 35303390 -88772782 + MT2B LTR ERVL 149 257 -344 5 854 778 194 0 7 chr9 35303289 35303434 -88772738 + B1_Mur3 SINE Alu 5 148 -1 5 854 269 122 20 0 chr9 35304508 35304557 -88771615 - B3A SINE B2 -84 114 65 5 854 243 183 0 82 chr9 35304571 35304680 -88771492 + T-rich Low_complexity Low_complexity 1 100 0 5 854 315 0 0 0 chr9 35304751 35304786 -88771386 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 854 535 274 88 7 chr9 35306754 35306901 -88769271 + RSINE1 SINE B4 5 163 -2 5 854 1309 73 4 16 chr9 35306932 35307190 -88768982 + (GGAA)n Simple_repeat Simple_repeat 1 254 0 5 854 343 283 56 56 chr9 35307190 35307456 -88768716 - L1MEg LINE L1 -4335 1749 1484 5 854 452 284 26 0 chr9 35307487 35307603 -88768569 - B3A SINE B2 -72 126 8 5 854 368 293 55 41 chr9 35307664 35307810 -88768362 - L1MEg LINE L1 -5541 543 396 5 854 797 301 66 12 chr9 35307816 35308075 -88768097 + B4A SINE B4 8 280 -12 5 854 562 282 102 94 chr9 35308134 35308506 -88767666 - L1MEg LINE L1 -5666 418 44 5 854 285 51 0 0 chr9 35309200 35309239 -88766933 + (A)n Simple_repeat Simple_repeat 1 39 0 5 854 746 298 113 9 chr9 35309961 35310296 -88765876 + MTEb LTR MaLR 3 372 -7 5 854 448 245 0 0 chr9 35311181 35311279 -88764893 - 5S rRNA rRNA -22 99 2 5 854 27 0 0 0 chr9 35313437 35313464 -88762708 + GC_rich Low_complexity Low_complexity 1 27 0 5 854 27 56 0 40 chr9 35314111 35314185 -88761987 + AT_rich Low_complexity Low_complexity 1 71 0 5 854 261 83 0 0 chr9 35315256 35315292 -88760880 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 854 540 0 0 0 chr9 35316300 35316360 -88759812 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 854 680 102 111 0 chr9 35316653 35316761 -88759411 - PB1D9 SINE Alu 0 120 1 5 854 418 265 50 37 chr9 35319884 35320045 -88756127 + MER33 DNA MER1_type 3 165 -159 5 854 289 124 161 43 chr9 35320062 35320155 -88756017 + MER33 DNA MER1_type 221 324 0 5 854 218 222 44 0 chr9 35320204 35320249 -88755923 + RSINE1 SINE B4 4 50 -115 5 854 393 211 13 0 chr9 35322944 35323020 -88753152 + ID_B1 SINE B4 119 195 -29 5 854 271 291 108 50 chr9 35323074 35323353 -88752819 - MER33 DNA MER1_type -19 305 11 5 854 300 341 47 89 chr9 35325121 35325311 -88750861 - B3A SINE B2 -16 182 1 5 854 686 155 16 0 chr9 35326347 35326476 -88749696 + CT-rich Low_complexity Low_complexity 3 133 0 5 854 1338 100 21 5 chr9 35326476 35326667 -88749505 - B2_Mm2 SINE B2 0 195 2 5 854 692 276 89 19 chr9 35327406 35327665 -88748507 + B4A SINE B4 4 280 -12 5 854 183 80 0 0 chr9 35328001 35328026 -88748146 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 5 854 375 23 0 0 chr9 35329593 35329637 -88746535 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 854 822 167 14 7 chr9 35330237 35330382 -88745790 + B1_Mus1 SINE Alu 2 147 -1 5 854 425 296 138 11 chr9 35330423 35330597 -88745575 - MLT1A1 LTR MaLR -100 308 113 5 854 287 121 35 0 chr9 35330725 35330783 -88745389 + MamGypLTR1b LTR Gypsy 712 771 -11 5 854 241 228 90 80 chr9 35331462 35331562 -88744610 - LTR50 LTR ERVL 0 795 695 5 854 305 316 112 51 chr9 35331664 35332074 -88744098 - LTR50 LTR ERVL -358 437 3 5 854 611 249 26 46 chr9 35332335 35332529 -88743643 - B3 SINE B2 -13 203 14 5 854 462 18 0 0 chr9 35332543 35332598 -88743574 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 854 6461 75 11 0 chr9 35333006 35334484 -88741688 + L1VL4 LINE L1 213 1709 -1850 5 854 7029 129 17 19 chr9 35334505 35334967 -88741205 + Lx2 LINE L1 5336 5796 -87 5 854 1110 72 0 7 chr9 35334967 35335107 -88741065 + B1_Mus2 SINE Alu 1 139 -8 5 854 261 0 0 0 chr9 35335107 35335136 -88741036 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 854 7029 103 37 42 chr9 35335136 35335984 -88740188 + Lx2 LINE L1 5794 6640 -357 5 854 1281 102 0 34 chr9 35335984 35336188 -88739984 + Lx2 LINE L1 6801 6997 0 5 854 385 289 103 41 chr9 35336188 35336383 -88739789 + L1M5 LINE L1 5324 5530 -594 5 854 192 40 0 0 chr9 35336522 35336547 -88739625 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 854 775 256 88 9 chr9 35336660 35336877 -88739295 - B4 SINE B4 -51 241 8 5 854 832 248 31 9 chr9 35336899 35337123 -88739049 + L1MB2 LINE L1 5866 6094 -77 5 854 342 0 0 0 chr9 35337166 35337204 -88738968 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 854 243 0 0 0 chr9 35338181 35338208 -88737964 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 854 745 175 36 14 chr9 35338727 35338866 -88737306 + B1_Mur2 SINE Alu 1 142 -7 5 854 318 87 0 0 chr9 35338866 35338912 -88737260 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 5 854 545 227 121 26 chr9 35338912 35339102 -88737070 - LTR40b LTR ERVL -4 458 251 5 854 3208 73 0 5 chr9 35339455 35339856 -88736316 + MTB LTR MaLR 2 400 0 5 854 972 188 0 55 chr9 35339917 35340136 -88736036 - B3 SINE B2 -1 215 9 5 854 264 59 0 0 chr9 35340224 35340258 -88735914 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 5 854 528 245 48 66 chr9 35340258 35340413 -88735759 - RSINE1 SINE B4 -9 156 3 5 854 493 258 0 0 chr9 35341354 35341451 -88734721 - PB1D10 SINE Alu -16 101 5 5 854 336 48 0 0 chr9 35341462 35341504 -88734668 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 854 301 250 62 12 chr9 35341609 35341690 -88734482 - PB1D10 SINE Alu -10 107 23 6 854 685 178 102 15 chr9 35341860 35341997 -88734175 - B1F2 SINE Alu 0 149 1 6 854 211 152 89 0 chr9 35342281 35342360 -88733812 + (TA)n Simple_repeat Simple_repeat 2 87 0 6 854 223 204 141 61 chr9 35342803 35342868 -88733304 + B2_Mm2 SINE B2 88 163 -32 6 854 2193 107 42 0 chr9 35342868 35343178 -88732994 + ORR1A2 LTR MaLR 5 327 0 6 854 223 204 141 61 chr9 35343178 35343211 -88732961 + B2_Mm2 SINE B2 164 194 -1 6 854 243 0 0 0 chr9 35343248 35343275 -88732897 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 6 854 357 145 0 0 chr9 35343277 35343339 -88732833 + (A)n Simple_repeat Simple_repeat 1 62 0 6 854 488 286 8 0 chr9 35343644 35343770 -88732402 + RSINE1 SINE B4 29 155 -10 6 854 279 0 0 0 chr9 35343926 35343957 -88732215 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 854 486 0 0 0 chr9 35343957 35344011 -88732161 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 854 541 287 34 20 chr9 35344028 35344174 -88731998 - B3A SINE B2 -38 160 13 6 854 604 178 30 37 chr9 35345512 35345646 -88730526 + B1_Mur1 SINE Alu 14 146 -3 6 854 587 243 36 0 chr9 35345671 35345811 -88730361 + RSINE1 SINE B4 2 146 -19 6 854 408 270 9 26 chr9 35348365 35348479 -88727693 - PB1D10 SINE Alu -5 112 1 6 854 642 250 139 4 chr9 35348652 35348897 -88727275 - B4A SINE B4 -10 282 5 6 854 425 155 0 0 chr9 35349748 35349819 -88726353 + B1_Mur3 SINE Alu 1 71 -78 6 854 404 119 0 106 chr9 35349929 35350023 -88726149 + B1_Mur3 SINE Alu 53 136 -13 6 854 444 37 0 0 chr9 35350026 35350080 -88726092 + (GAA)n Simple_repeat Simple_repeat 3 56 0 6 854 550 233 0 16 chr9 35350603 35350725 -88725447 - PB1D9 SINE Alu 0 120 1 6 854 378 214 0 0 chr9 35351973 35352043 -88724129 + ID2 SINE ID 3 72 -11 6 854 248 130 22 0 chr9 35352071 35352117 -88724055 + (CAA)n Simple_repeat Simple_repeat 1 47 0 6 854 367 289 86 20 chr9 35352282 35352434 -88723738 - MER3 DNA MER1_type -1 208 47 6 854 685 307 156 20 chr9 35352735 35353346 -88722826 + L1ME1 LINE L1 5407 6100 -79 6 854 228 86 0 0 chr9 35353796 35353831 -88722341 + (TCC)n Simple_repeat Simple_repeat 2 36 0 6 854 970 247 242 26 chr9 35356043 35356816 -88719356 + RCHARR1 DNA MER1_type 4 941 -33 6 854 1148 146 48 54 chr9 35356824 35357157 -88719015 - RMER17C LTR ERVK 0 410 80 6 854 945 220 60 0 chr9 35357206 35357406 -88718766 + Lx6 LINE L1 7249 7460 0 6 854 222 118 0 0 chr9 35358077 35358111 -88718061 + (A)n Simple_repeat Simple_repeat 1 34 0 6 854 180 344 47 0 chr9 35358113 35358177 -88717995 - MER5A DNA MER1_type -52 137 71 6 854 2132 81 105 0 chr9 35358327 35358623 -88717549 + ORR1A2 LTR MaLR 1 327 0 6 854 1211 54 0 0 chr9 35359178 35359325 -88716847 - B1_Mus1 SINE Alu 0 148 2 6 854 225 152 65 0 chr9 35359520 35359566 -88716606 + B1F SINE Alu 88 136 -13 6 854 239 0 0 31 chr9 35359567 35359599 -88716573 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 854 288 77 0 0 chr9 35361227 35361266 -88714906 + (T)n Simple_repeat Simple_repeat 1 39 0 6 854 236 221 101 54 chr9 35361618 35361747 -88714425 - MIR SINE MIR -123 139 5 6 854 257 89 0 22 chr9 35362201 35362247 -88713925 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 6 854 989 250 48 42 chr9 35362393 35362702 -88713470 - MTEb LTR MaLR -61 318 8 6 854 682 196 7 29 chr9 35363236 35363373 -88712799 - B1_Mur4 SINE Alu -16 134 1 6 854 27 0 0 0 chr9 35366123 35366150 -88710022 + GC_rich Low_complexity Low_complexity 1 27 0 6 854 252 59 0 0 chr9 35368442 35368476 -88707696 + (A)n Simple_repeat Simple_repeat 1 34 0 6 854 332 286 63 22 chr9 35370007 35370144 -88706028 - MIR SINE MIR -115 161 4 6 854 764 129 24 0 chr9 35371203 35371327 -88704845 + B1_Mus1 SINE Alu 22 148 0 6 854 23 0 0 0 chr9 35371987 35372010 -88704162 + AT_rich Low_complexity Low_complexity 1 23 0 6 854 269 297 42 67 chr9 35372166 35372285 -88703887 - PB1D10 SINE Alu 0 117 2 6 854 411 250 92 0 chr9 35375099 35375219 -88700953 + ID_B1 SINE B4 87 217 -7 6 854 443 271 44 22 chr9 35375895 35376031 -88700141 - B3A SINE B2 -22 176 38 6 854 571 226 0 8 chr9 35378366 35378491 -88697681 + B2_Mm2 SINE B2 2 125 -70 6 854 759 57 9 0 chr9 35378600 35378705 -88697467 - B1_Mm SINE Alu 0 147 42 6 854 221 91 0 0 chr9 35378978 35379011 -88697161 - PB1D10 SINE Alu -17 100 68 6 854 338 289 122 47 chr9 35379706 35379940 -88696232 + RLTR18B LTR ERVK 112 357 -259 6 854 1991 55 51 4 chr9 35379940 35380216 -88695956 + L1_Mus3 LINE L1 6350 6638 0 6 854 338 295 172 95 chr9 35380216 35380450 -88695722 + RLTR18B LTR ERVK 245 610 -6 6 854 1112 301 48 24 chr9 35380750 35381213 -88694959 - Charlie12 DNA MER1_type 0 2873 2400 6 854 2198 269 48 93 chr9 35382268 35382782 -88693390 - Charlie12 DNA MER1_type -460 2413 1942 6 854 711 187 0 176 chr9 35382782 35382964 -88693208 - B1_Mur4 SINE Alu 0 150 1 6 854 2198 269 48 93 chr9 35382964 35383503 -88692669 - Charlie12 DNA MER1_type -932 1941 1407 6 854 649 305 21 0 chr9 35383502 35383689 -88692483 - B3A SINE B2 -7 191 1 6 854 21 0 0 0 chr9 35383699 35383720 -88692452 + AT_rich Low_complexity Low_complexity 1 21 0 6 854 7587 126 30 49 chr9 35383720 35384959 -88691213 - Lx4A LINE L1 -1 7057 5843 6 854 2015 115 12 21 chr9 35384959 35385207 -88690965 + ORR1A2 LTR MaLR 2 252 -75 6 854 3170 61 24 0 chr9 35385207 35385618 -88690554 + BGLII LTR ERVK 1 421 0 6 854 2015 115 12 21 chr9 35385618 35385698 -88690474 + ORR1A2 LTR MaLR 253 327 0 6 854 12532 87 21 3 chr9 35385698 35387436 -88688736 - L1_Mur2 LINE L1 -39 5838 4070 6 854 441 0 0 0 chr9 35387448 35387497 -88688675 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 854 14807 135 8 6 chr9 35387498 35389420 -88686752 - L1_Mm LINE L1 -811 5072 3149 6 106 243 0 0 0 chr9 35389420 35389447 -88686725 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 6 855 14807 135 8 6 chr9 35389447 35389471 -88686701 - L1_Mm LINE L1 -2735 3148 3132 6 855 1134 89 0 0 chr9 35389471 35389617 -88686555 - B1_Mm SINE Alu 0 147 2 6 855 14807 135 8 6 chr9 35389617 35390231 -88685941 - L1_Mm LINE L1 -2752 3131 2506 6 855 558 219 0 46 chr9 35390223 35390376 -88685796 - L1VL2 LINE L1 -6111 224 79 6 855 15910 95 27 29 chr9 35390366 35393726 -88682446 - L1_Mur2 LINE L1 -1971 3906 550 6 855 361 290 150 20 chr9 35393734 35393987 -88682185 - Charlie12 DNA MER1_type -1450 1423 1138 6 855 1262 188 164 58 chr9 35393992 35394333 -88681839 - ORR1B2 LTR MaLR 0 367 1 6 855 1110 259 32 81 chr9 35394343 35394750 -88681422 - Charlie12 DNA MER1_type -1752 1121 735 6 855 631 223 89 30 chr9 35394882 35395085 -88681087 + B3 SINE B2 2 216 0 6 855 1689 209 112 73 chr9 35395175 35395665 -88680507 - RMER4B LTR ERVK -4 581 73 6 855 966 119 28 0 chr9 35396006 35396149 -88680023 - B1_Mus2 SINE Alu 0 147 1 6 855 28 0 0 0 chr9 35397296 35397324 -88678848 + AT_rich Low_complexity Low_complexity 1 28 0 6 855 1701 93 129 73 chr9 35397541 35397843 -88678329 + ORR1A2 LTR MaLR 1 319 -8 6 855 5977 55 15 26 chr9 35397958 35398805 -88677367 - L1Md_F2 LINE L1 -12 6570 5733 6 855 5076 60 1 0 chr9 35398801 35399486 -88676686 + L1_Mm LINE L1 3545 4230 -1653 6 855 572 177 0 7 chr9 35400258 35400400 -88675772 + GA-rich Low_complexity Low_complexity 1 141 0 6 855 378 91 0 0 chr9 35401160 35401215 -88674957 + (CATA)n Simple_repeat Simple_repeat 2 56 0 6 855 547 293 21 7 chr9 35401245 35401386 -88674786 - B4A SINE B4 -58 234 92 6 855 319 250 32 123 chr9 35401400 35401555 -88674617 - RLTR13D3 LTR ERVK -30 1084 944 6 855 264 191 0 0 chr9 35401791 35401833 -88674339 - B2_Mm2 SINE B2 -153 42 1 6 855 230 184 0 0 chr9 35402300 35402338 -88673834 - RLTR13D3 LTR ERVK -1076 38 1 6 855 381 259 33 11 chr9 35402338 35402428 -88673744 - B4 SINE B4 -199 93 2 6 855 1001 189 62 10 chr9 35402636 35402828 -88673344 - B3 SINE B2 -14 202 1 6 855 1177 183 10 0 chr9 35402955 35403152 -88673020 - RLTR1D LTR ERV1 -1 604 406 6 855 565 42 0 0 chr9 35403146 35403218 -88672954 - RLTR1D LTR ERV1 -533 72 1 6 855 1874 178 50 25 chr9 35403231 35403553 -88672619 + ORR1C1 LTR MaLR 8 340 -38 6 855 2668 134 40 18 chr9 35403553 35404009 -88672163 + RMER4A LTR ERVK 1 466 0 6 855 1874 178 50 25 chr9 35404009 35404048 -88672124 + ORR1C1 LTR MaLR 341 378 0 6 855 396 0 0 0 chr9 35404311 35404355 -88671817 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 855 261 301 35 118 chr9 35404559 35404729 -88671443 + MTEa LTR MaLR 164 328 -51 6 855 1624 42 0 0 chr9 35404729 35404921 -88671251 - B2_Mm1t SINE B2 -1 192 1 6 855 261 284 0 102 chr9 35404921 35404965 -88671207 + MTEa LTR MaLR 329 365 -14 6 855 792 335 102 9 chr9 35405084 35405406 -88670766 - MLT1A0 LTR MaLR -11 354 3 6 855 502 370 34 15 chr9 35405462 35405668 -88670504 + Tigger5 DNA MER2_type 1 210 -2196 6 855 1298 177 48 39 chr9 35405673 35406007 -88670165 - ORR1A4 LTR MaLR 0 329 1 6 855 279 330 9 44 chr9 35406007 35406104 -88670068 + Tigger5 DNA MER2_type 2310 2402 -4 6 855 243 0 0 0 chr9 35406139 35406166 -88670006 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 855 413 327 48 105 chr9 35406331 35406560 -88669612 + MER21B LTR ERV1 143 358 -505 6 855 5823 109 30 3 chr9 35406759 35407671 -88668501 - Lx LINE L1 0 6654 5719 6 855 3506 180 87 45 chr9 35407683 35408051 -88668121 + RMER17B LTR ERVK 5 350 -608 6 855 783 59 0 0 chr9 35408051 35408152 -88668020 + (TC)n Simple_repeat Simple_repeat 1 101 0 6 855 3506 180 87 45 chr9 35408152 35408613 -88667559 + RMER17B LTR ERVK 351 868 -90 6 855 4176 171 14 12 chr9 35408622 35409453 -88666719 - L1_Mm LINE L1 -815 5068 4236 6 855 5947 95 22 3 chr9 35409447 35410393 -88665779 - L1VL2 LINE L1 -508 3107 2144 6 855 7519 53 53 3 chr9 35410389 35411416 -88664756 + L1_Mus3 LINE L1 5554 6631 -7 6 855 306 125 0 0 chr9 35411425 35411473 -88664699 + (A)n Simple_repeat Simple_repeat 1 48 0 6 855 7617 87 28 13 chr9 35411475 35412078 -88664094 - L1VL2 LINE L1 -1466 2149 1558 6 855 2164 92 3 66 chr9 35412078 35412426 -88663746 + IAPLTR3 LTR ERVK 1 326 0 6 855 7617 116 26 17 chr9 35412426 35413884 -88662288 - L1VL2 LINE L1 -2058 1557 66 6 855 645 209 72 9 chr9 35414191 35414391 -88661781 + Lx3C LINE L1 6787 6972 -4 6 855 1389 283 63 36 chr9 35414628 35415105 -88661067 - MLT1D LTR MaLR -1 504 15 6 855 332 247 55 22 chr9 35416816 35416907 -88659265 + MER2B DNA MER2_type 178 271 -65 7 855 497 341 111 22 chr9 35417187 35417502 -88658670 - L1MC LINE L1 -2286 5596 5254 7 855 470 170 30 0 chr9 35417575 35417675 -88658497 - Lx9 LINE L1 0 7644 7542 7 855 7481 47 3 0 chr9 35418380 35419294 -88656878 + L1Md_F2 LINE L1 5654 6570 -12 7 855 207 0 0 0 chr9 35419663 35419686 -88656486 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 855 396 91 0 0 chr9 35419686 35419752 -88656420 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 855 391 250 65 32 chr9 35420598 35420722 -88655450 - MIRb SINE MIR -85 183 56 7 855 611 304 90 31 chr9 35420901 35421190 -88654982 - MLT1D LTR MaLR 0 505 200 7 855 315 305 0 68 chr9 35421200 35421288 -88654884 - ID_B1 SINE B4 -128 96 15 7 855 369 314 21 21 chr9 35421288 35421428 -88654744 - MLT1D LTR MaLR -302 203 64 7 855 687 241 126 56 chr9 35421428 35421643 -88654529 + MTD LTR MaLR 175 404 -15 7 855 5689 218 86 46 chr9 35421662 35423635 -88652537 - L1_Rod LINE L1 -1622 4225 2174 7 855 3835 175 49 7 chr9 35423635 35424332 -88651840 + RLTR21 LTR ERVK 1 726 -846 7 855 1384 96 0 0 chr9 35424360 35424548 -88651624 - B2_Mm2 SINE B2 -6 189 2 7 855 2971 192 41 10 chr9 35424579 35424758 -88651414 - Lx5 LINE L1 -43 7007 6821 7 855 204 40 0 0 chr9 35424758 35424783 -88651389 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 7 855 2971 192 41 10 chr9 35424783 35425217 -88650955 - Lx5 LINE L1 -230 6820 6375 7 855 512 273 16 16 chr9 35426192 35426382 -88649790 + L1_Mur3 LINE L1 4080 4269 -1611 7 855 263 297 27 68 chr9 35426398 35426474 -88649698 - L1_Mur3 LINE L1 -763 5537 5466 7 855 1075 221 10 0 chr9 35426474 35426678 -88649494 + B3 SINE B2 1 206 -10 7 855 274 272 0 1 chr9 35426678 35426749 -88649423 - L1_Mur3 LINE L1 -835 5465 5362 7 855 785 260 88 54 chr9 35426751 35426991 -88649181 - MTE2b LTR MaLR -4 375 128 7 855 714 240 137 32 chr9 35427009 35427361 -88648811 - Lx4B LINE L1 -571 5937 5561 7 855 1264 221 87 4 chr9 35427441 35427815 -88648357 - RMER1A Other Other -427 603 281 7 855 1529 270 84 17 chr9 35427817 35428518 -88647654 - Lx4B LINE L1 -4373 2135 1388 7 855 22 35 0 0 chr9 35429166 35429195 -88646977 + AT_rich Low_complexity Low_complexity 1 29 0 7 855 1161 231 195 0 chr9 35429593 35429901 -88646271 - ORR1D2 LTR MaLR -2 368 1 7 855 1291 257 121 16 chr9 35430034 35430413 -88645759 + MTD LTR MaLR 1 419 0 7 855 3130 49 5 3 chr9 35430531 35430921 -88645251 + L1_Mus2 LINE L1 6176 6566 0 7 855 589 237 30 0 chr9 35431122 35431257 -88644915 + MTEa LTR MaLR 233 371 -8 7 855 4305 142 136 80 chr9 35431356 35432403 -88643769 + L1Md_T LINE L1 101 1205 -5411 7 855 34619 34 0 0 chr9 35432409 35436826 -88639346 + L1Md_T LINE L1 1170 5586 -297 7 855 8113 52 0 0 chr9 35436826 35437822 -88638350 + L1Md_T LINE L1 5587 6582 0 7 855 1135 69 0 7 chr9 35437935 35438081 -88638091 - B1_Mus2 SINE Alu -1 146 2 7 855 581 252 71 7 chr9 35438860 35439000 -88637172 - B1F SINE Alu 0 149 1 7 855 507 268 53 102 chr9 35438861 35439048 -88637124 - ID_B1 SINE B4 0 224 47 7 855 263 269 0 0 chr9 35439216 35439283 -88636889 - RMER15 LTR ERVL -105 470 404 7 855 1300 304 29 24 chr9 35439284 35439702 -88636470 - Lx8 LINE L1 -207 7266 6847 7 855 738 269 180 31 chr9 35439742 35440064 -88636108 + MLT1B LTR MaLR 18 387 -3 7 855 613 230 7 21 chr9 35440887 35441029 -88635143 - B1_Mur2 SINE Alu -5 144 5 7 855 1205 173 186 50 chr9 35441958 35442275 -88633897 + RLTR30 LTR ERV1 1 360 -19 7 855 23 0 0 0 chr9 35442311 35442334 -88633838 + AT_rich Low_complexity Low_complexity 1 23 0 7 855 8370 52 3 4 chr9 35443215 35444903 -88631269 - L1Md_F2 LINE L1 -9 6573 4888 7 855 13970 28 0 0 chr9 35444903 35446525 -88629647 + L1Md_F2 LINE L1 3965 5586 -297 7 855 8497 52 3 1 chr9 35446525 35447517 -88628655 + L1Md_F2 LINE L1 5587 6580 -2 7 855 1068 210 12 63 chr9 35447517 35447771 -88628401 - RLTR18B LTR ERVK -269 243 3 7 855 225 0 0 0 chr9 35449223 35449248 -88626924 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 855 3307 36 0 0 chr9 35449462 35449819 -88626353 + IAPEY2_LTR LTR ERVK 1 357 0 7 855 306 315 132 4 chr9 35450111 35450360 -88625812 + L1MC4 LINE L1 7561 7841 -201 7 855 31 26 0 0 chr9 35450500 35450538 -88625634 + AT_rich Low_complexity Low_complexity 1 38 0 7 855 1344 250 85 26 chr9 35450742 35451083 -88625089 - MTD LTR MaLR -54 365 5 7 855 41 21 0 0 chr9 35451093 35451141 -88625031 + AT_rich Low_complexity Low_complexity 1 48 0 7 855 405 0 0 0 chr9 35451309 35451354 -88624818 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 7 855 445 143 33 77 chr9 35451363 35451454 -88624718 + PB1D7 SINE Alu 34 120 0 7 855 463 327 19 57 chr9 35452358 35452517 -88623655 - MER70B LTR ERVL -23 555 403 7 855 402 344 29 41 chr9 35452761 35452931 -88623241 - MER70B LTR ERVL -260 318 151 7 855 705 281 24 18 chr9 35454538 35454708 -88621464 - B4 SINE B4 -87 205 35 7 855 413 353 78 26 chr9 35454866 35455020 -88621152 + RSINE1 SINE B4 2 163 -2 7 855 2181 233 27 136 chr9 35456623 35457570 -88618602 + L1_Mus2 LINE L1 245 1111 -5527 7 855 405 39 0 0 chr9 35457570 35457621 -88618551 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 7 855 24769 165 7 108 chr9 35457621 35458198 -88617974 + L1_Mus2 LINE L1 1110 1569 -4317 7 855 1479 72 39 6 chr9 35458198 35458371 -88617801 + B2_Mm2 SINE B2 3 182 -13 7 855 321 47 0 0 chr9 35458371 35458414 -88617758 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 855 24769 173 7 39 chr9 35458422 35459378 -88616794 + L1_Mus2 LINE L1 1570 2521 -3365 7 855 4837 25 2 0 chr9 35459378 35459902 -88616270 - L1Md_T LINE L1 -2 6580 6056 7 855 24769 173 7 39 chr9 35459902 35460869 -88615303 + L1_Mus2 LINE L1 2522 3479 -2407 7 855 324 0 0 0 chr9 35460869 35460905 -88615267 + (CAA)n Simple_repeat Simple_repeat 1 36 0 7 855 24769 147 6 29 chr9 35460905 35464134 -88612038 + L1_Mus2 LINE L1 3480 6566 0 7 855 573 239 51 0 chr9 35464142 35464280 -88611892 - MER2 DNA MER2_type -25 320 176 7 855 1941 96 389 0 chr9 35464316 35464630 -88611542 + RLTR10C LTR ERVK 1 436 0 7 855 607 81 35 0 chr9 35464630 35464717 -88611455 + MMERVK10C-int LTR ERVK 1 90 -7491 7 855 242 278 0 18 chr9 35464720 35464775 -88611397 + RLTR27 LTR ERVK 222 275 -34 7 855 21774 57 2 2 chr9 35464775 35467408 -88608764 + MMERVK10C-int LTR ERVK 225 2856 -4725 7 855 3479 40 9 2 chr9 35467408 35467827 -88608345 + L1_Mm LINE L1 5164 5586 -297 7 855 8674 37 15 1 chr9 35467827 35468807 -88607365 + L1Md_F2 LINE L1 5587 6580 -2 7 855 868 267 9 23 chr9 35468817 35469032 -88607140 + B3 SINE B2 5 216 0 7 855 273 29 0 0 chr9 35469319 35469353 -88606819 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 7 855 3500 146 4 4 chr9 35470368 35470883 -88605289 - Lx4A LINE L1 0 7058 6544 7 855 449 146 437 0 chr9 35471827 35471930 -88604242 - B1_Mus1 SINE Alu 0 148 1 7 855 2917 199 84 22 chr9 35473302 35473567 -88602605 + Lx6 LINE L1 6794 7096 -364 7 855 3184 32 0 0 chr9 35473567 35473913 -88602259 - ORR1A1 LTR MaLR 0 346 1 7 855 2917 199 84 22 chr9 35473913 35474275 -88601897 + Lx6 LINE L1 7097 7460 0 7 855 669 290 69 158 chr9 35475315 35475618 -88600554 - RMER1A Other Other -531 535 239 7 855 447 19 0 0 chr9 35475618 35475670 -88600502 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 855 1440 252 58 83 chr9 35475670 35476201 -88599971 - RMER1B Other Other -553 513 1 7 855 375 158 49 0 chr9 35476270 35476352 -88599820 + Lx9 LINE L1 7559 7644 0 7 855 322 381 81 25 chr9 35476659 35476944 -88599228 - L2 LINE L2 -463 2956 2656 7 855 582 148 0 90 chr9 35477779 35477874 -88598298 + PB1D9 SINE Alu 17 108 -12 7 855 227 31 0 30 chr9 35477874 35477907 -88598265 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 7 855 582 148 0 90 chr9 35477907 35477922 -88598250 + PB1D9 SINE Alu 109 117 -3 7 855 1299 240 78 19 chr9 35479428 35479747 -88596425 - MTD LTR MaLR -14 405 68 7 855 23 0 0 0 chr9 35479753 35479776 -88596396 + AT_rich Low_complexity Low_complexity 1 23 0 7 855 570 245 184 26 chr9 35479778 35479993 -88596179 - Lx5 LINE L1 -3 7055 6793 7 855 291 141 0 0 chr9 35480474 35480538 -88595634 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 7 855 585 0 0 0 chr9 35480543 35480608 -88595564 + (CAAAC)n Simple_repeat Simple_repeat 5 69 0 7 855 713 352 50 32 chr9 35481295 35481638 -88594534 - ORR1E LTR MaLR -10 349 1 7 855 280 183 32 32 chr9 35481836 35481898 -88594274 - MLT1G3 LTR MaLR -533 62 1 7 855 190 414 0 0 chr9 35481900 35481958 -88594214 - MIRb SINE MIR -182 86 29 7 855 27 0 0 0 chr9 35481981 35482008 -88594164 + AT_rich Low_complexity Low_complexity 1 27 0 7 855 2004 36 0 0 chr9 35482008 35482232 -88593940 - L1Md_F2 LINE L1 -13 6569 6346 7 855 7306 112 7 13 chr9 35482232 35484064 -88592108 - L1Md_A LINE L1 -3682 2201 383 7 855 328 309 26 130 chr9 35484100 35484647 -88591525 + L1M2 LINE L1 4908 5397 -746 7 855 2871 218 13 48 chr9 35484660 35485346 -88590826 + Lx9 LINE L1 6959 7620 -24 7 855 607 250 52 73 chr9 35485585 35485818 -88590354 + B4 SINE B4 2 229 -63 7 855 2907 113 11 14 chr9 35485819 35486259 -88589913 - L1_Mus2 LINE L1 -851 5032 4594 7 855 7433 91 3 1 chr9 35486258 35487797 -88588375 + L1_Mus2 LINE L1 5024 6566 0 7 855 267 319 27 14 chr9 35487806 35487879 -88588293 + RSINE1 SINE B4 87 160 -5 7 855 7923 52 9 7 chr9 35487924 35489575 -88586597 + L1Md_F3 LINE L1 4899 6557 -27 7 855 405 0 0 0 chr9 35489576 35489621 -88586551 + (TAA)n Simple_repeat Simple_repeat 1 45 0 7 855 222 194 136 61 chr9 35489667 35489733 -88586439 - B3 SINE B2 -145 71 1 7 855 382 135 0 0 chr9 35490527 35490579 -88585593 + Lx6 LINE L1 6828 6879 -581 7 855 522 0 0 0 chr9 35490811 35490869 -88585303 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 855 348 154 43 32 chr9 35491031 35491118 -88585054 - RLTR46 LTR ERVK 0 332 243 7 855 1056 305 222 37 chr9 35491622 35492136 -88584036 + Lx8 LINE L1 6723 7329 -144 7 855 396 0 0 0 chr9 35492136 35492180 -88583992 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 855 1056 305 222 37 chr9 35492180 35492291 -88583881 + Lx8 LINE L1 7330 7463 -10 7 855 237 65 0 0 chr9 35493384 35493415 -88582757 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 7 855 6270 96 27 8 chr9 35495330 35497003 -88579169 + L1VL2 LINE L1 119 1823 -1792 7 855 282 280 13 0 chr9 35497148 35497223 -88578949 - PB1D10 SINE Alu -2 115 40 7 855 906 180 201 6 chr9 35498393 35498572 -88577600 + B3 SINE B2 1 214 -2 8 855 405 58 0 0 chr9 35499429 35499481 -88576691 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 855 550 310 42 14 chr9 35499703 35499847 -88576325 + RSINE1 SINE B4 2 149 -16 8 855 570 15 0 0 chr9 35500287 35500354 -88575818 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 855 510 201 102 17 chr9 35500484 35500509 -88575663 + RMER1C Other Other 1151 1177 -165 2 855 414 0 0 0 chr9 35500509 35500555 -88575617 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 855 510 201 102 17 chr9 35500555 35500706 -88575466 + RMER1C Other Other 1178 1341 -1 2 855 357 258 0 29 chr9 35500766 35500834 -88575338 + RSINE1 SINE B4 19 84 -81 4 855 180 0 0 0 chr9 35501837 35501857 -88574315 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 5 855 345 324 19 0 chr9 35501955 35502060 -88574112 + B3A SINE B2 1 107 -91 6 855 354 289 32 48 chr9 35502115 35502366 -88573806 + L1M4 LINE L1 3157 3403 -2743 7 855 5019 103 16 5 chr9 35502388 35503130 -88573042 + L1_Mus3 LINE L1 5889 6638 0 8 855 878 76 61 0 chr9 35503191 35503323 -88572849 + ETnERV3-int LTR ERVK 4146 4285 -1121 9 855 1994 214 5 23 chr9 35503299 35503735 -88572437 + ETnERV3-int LTR ERVK 5350 5777 -31 9 855 6296 156 19 33 chr9 35503750 35504879 -88571293 + RLTR13D3 LTR ERVK 1 1114 0 9 855 327 271 0 20 chr9 35505246 35505344 -88570828 + Lx8 LINE L1 6884 6979 -494 1 855 288 167 149 47 chr9 35505352 35505459 -88570713 + Lx8 LINE L1 7356 7473 0 1 855 367 324 38 28 chr9 35505493 35505706 -88570466 + L1M3e LINE L1 1 215 -6815 1 855 251 200 49 24 chr9 35505730 35505812 -88570360 + GA-rich Low_complexity Low_complexity 5 88 0 1 855 440 274 58 2 chr9 35506208 35506392 -88569780 + L1ME1 LINE L1 5652 5845 -319 1 855 390 0 0 0 chr9 35506419 35506468 -88569704 - L1Md_Gf LINE L1 -5469 1053 1005 1 855 7462 36 6 0 chr9 35506468 35507368 -88568804 + L1Md_F3 LINE L1 5679 6583 -1 1 855 477 185 66 25 chr9 35508793 35508907 -88567265 + Lx9 LINE L1 7347 7467 -177 1 855 315 0 0 0 chr9 35508907 35508942 -88567230 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 855 1666 198 86 19 chr9 35508948 35509365 -88566807 - Lx9 LINE L1 -296 7348 6904 1 855 1838 204 73 13 chr9 35509369 35509928 -88566244 - Lx9 LINE L1 -1663 5981 5364 1 855 1057 47 0 0 chr9 35509996 35510144 -88566028 - L1Md_F LINE L1 -4132 1751 1604 2 855 8465 9 0 0 chr9 35510150 35511734 -88564438 - L1Md_A LINE L1 0 6582 4999 2 855 8219 9 0 0 chr9 35511730 35512704 -88563468 + L1Md_A LINE L1 3990 4963 -920 2 855 3970 157 38 52 chr9 35512701 35514075 -88562097 - L1Md_F LINE L1 -4266 1617 264 2 855 3292 235 78 37 chr9 35514091 35515480 -88560692 - Lx9 LINE L1 -741 5106 3661 1 855 25 51 0 0 chr9 35515490 35515529 -88560643 + AT_rich Low_complexity Low_complexity 1 39 0 2 855 3025 111 22 9 chr9 35515538 35515993 -88560179 - Lx3A LINE L1 -12 6969 6509 2 855 12349 102 31 10 chr9 35515995 35517015 -88559157 - Lx3A LINE L1 -660 6321 5284 2 855 189 0 0 0 chr9 35517015 35517036 -88559136 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 855 12349 97 29 8 chr9 35517036 35518399 -88557773 - Lx3A LINE L1 -603 5283 3891 2 855 26 0 0 0 chr9 35518472 35518498 -88557674 + AT_rich Low_complexity Low_complexity 1 26 0 2 855 210 324 0 0 chr9 35519177 35519245 -88556927 + PB1D10 SINE Alu 48 115 -2 2 855 5725 92 18 0 chr9 35519389 35520331 -88555841 - L1VL2 LINE L1 -1789 1826 869 2 855 672 36 0 0 chr9 35520331 35520414 -88555758 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 106 5725 116 19 9 chr9 35520414 35521201 -88554971 - L1VL2 LINE L1 -5467 868 74 2 856 15340 116 13 39 chr9 35521210 35522235 -88553937 - L1_Mur1 LINE L1 -1971 3915 2880 2 856 1161 83 0 0 chr9 35522235 35522415 -88553757 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 856 15340 116 13 39 chr9 35522415 35522512 -88553660 - L1_Mur1 LINE L1 -3007 2879 2879 3 856 288 70 0 0 chr9 35522512 35522555 -88553617 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 856 15340 115 12 35 chr9 35522555 35524245 -88551927 - L1_Mur1 LINE L1 -3007 2879 1174 2 856 26 0 0 0 chr9 35524250 35524276 -88551896 + AT_rich Low_complexity Low_complexity 1 26 0 3 856 29207 110 19 1 chr9 35524276 35530343 -88545829 - L1_Mus1 LINE L1 -4 6563 380 3 856 2014 144 50 3 chr9 35530355 35530737 -88545435 - L1_Mur1 LINE L1 -5873 1111 712 2 856 369 219 0 0 chr9 35530744 35530826 -88545346 - L1_Mur1 LINE L1 -6891 91 10 3 856 442 246 0 0 chr9 35530847 35530957 -88545215 - L1_Mur1 LINE L1 -6667 317 208 2 856 1561 151 18 1 chr9 35530976 35531406 -88544766 - L1_Mur2 LINE L1 -4381 1496 1059 3 856 1815 169 71 6 chr9 35531413 35531777 -88544395 - L1_Mur2 LINE L1 -6157 929 542 3 856 300 53 0 0 chr9 35531796 35531834 -88544338 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 3 856 1074 190 32 0 chr9 35532346 35532562 -88543610 - Lx2 LINE L1 0 6997 6775 3 856 13608 158 16 2 chr9 35532562 35535966 -88540206 - Lx2 LINE L1 -354 6643 3182 3 856 9146 126 8 26 chr9 35535965 35536924 -88539248 + L1_Mus2 LINE L1 4356 5314 -569 3 856 2921 70 3 5 chr9 35536924 35537311 -88538861 + L1Md_F2 LINE L1 6185 6570 -12 4 856 9146 98 15 12 chr9 35537311 35538583 -88537589 + L1_Mus2 LINE L1 5315 6565 -1 3 856 7208 71 1 2 chr9 35538622 35539761 -88536411 - L1Md_F2 LINE L1 0 6582 5447 4 856 29778 106 37 15 chr9 35539757 35546184 -88529988 - L1Md_T LINE L1 0 6582 1 4 856 3925 142 15 72 chr9 35546179 35547327 -88528845 - Lx2 LINE L1 -2715 3168 2162 3 856 1710 216 85 19 chr9 35547343 35547721 -88528451 + RMER13A LTR ERVK 1 403 -457 4 856 648 87 0 0 chr9 35547898 35547990 -88528182 + (GA)n Simple_repeat Simple_repeat 1 92 0 4 856 216 363 56 8 chr9 35549299 35549424 -88526748 + MIR3 SINE MIR 14 144 -64 4 856 23 0 0 0 chr9 35550159 35550182 -88525990 + AT_rich Low_complexity Low_complexity 1 23 0 4 856 443 274 29 15 chr9 35552311 35552448 -88523724 - MLT1A0 LTR MaLR 0 365 227 4 856 1887 170 20 0 chr9 35552826 35553167 -88523005 + Lx4A LINE L1 6711 7058 0 4 856 393 279 13 0 chr9 35553188 35553267 -88522905 - B1F2 SINE Alu -32 117 38 4 856 448 45 30 0 chr9 35553388 35553455 -88522717 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 5 856 297 269 88 62 chr9 35553470 35553802 -88522370 + L1MD2 LINE L1 5910 6252 -1533 5 856 1163 88 0 0 chr9 35553819 35553966 -88522206 + B1_Mus1 SINE Alu 1 147 -1 5 856 333 277 35 35 chr9 35554530 35554646 -88521526 + Tigger5 DNA MER2_type 2291 2406 0 5 856 612 301 39 72 chr9 35554826 35555216 -88520956 - L1MA9 LINE L1 -283 6029 5653 5 856 255 333 49 45 chr9 35555260 35555483 -88520689 + L1_Mur3 LINE L1 69 292 -7420 5 856 737 254 28 0 chr9 35555495 35555712 -88520460 + L1_Mur3 LINE L1 850 1072 -6640 5 856 819 160 8 0 chr9 35555714 35555845 -88520327 + RLTR11A LTR ERVK 1 132 -396 5 856 1622 126 96 0 chr9 35555853 35556146 -88520026 - RLTR47_MM LTR ERV1 -85 447 127 5 856 15386 67 11 1 chr9 35556146 35558955 -88517217 - L1Md_F3 LINE L1 -22 6560 3735 5 856 27122 69 12 2 chr9 35558938 35563540 -88512632 - L1Md_F3 LINE L1 -2 6582 1945 5 856 845 285 14 24 chr9 35563680 35563892 -88512280 - B3 SINE B2 0 216 7 5 856 651 130 16 8 chr9 35564156 35564280 -88511892 + CT-rich Low_complexity Low_complexity 4 128 0 6 856 981 78 49 7 chr9 35564303 35564445 -88511727 - B2_Mm2 SINE B2 -8 187 40 6 856 491 300 23 0 chr9 35565812 35565942 -88510230 - B1F SINE Alu -5 144 12 6 856 1835 130 73 25 chr9 35566456 35566811 -88509361 - Lx LINE L1 -5 6649 6278 6 856 6655 68 3 0 chr9 35567989 35568890 -88507282 - L1_Mus1 LINE L1 -6 6561 5676 6 856 21 0 0 0 chr9 35569022 35569043 -88507129 + AT_rich Low_complexity Low_complexity 1 21 0 6 856 265 287 78 42 chr9 35569832 35569974 -88506198 - L1MA6 LINE L1 -364 5936 5790 6 856 210 232 0 0 chr9 35569992 35570048 -88506124 + GA-rich Low_complexity Low_complexity 1 56 0 6 856 575 271 40 27 chr9 35570965 35571113 -88505059 - RSINE1 SINE B4 0 165 16 6 856 733 236 0 0 chr9 35571227 35571354 -88504818 + B1_Mur1 SINE Alu 2 128 -21 6 856 318 107 0 0 chr9 35571358 35571414 -88504758 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 856 220 0 86 0 chr9 35571561 35571596 -88504576 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 7 856 2386 59 0 3 chr9 35571802 35572107 -88504065 + L1Md_F2 LINE L1 6267 6570 -12 7 856 475 348 26 42 chr9 35572798 35572990 -88503182 + ID_B1 SINE B4 15 203 -21 7 856 209 222 0 0 chr9 35572998 35573043 -88503129 + A-rich Low_complexity Low_complexity 1 45 0 7 856 451 331 109 53 chr9 35573390 35573747 -88502425 - MTEb LTR MaLR 0 379 3 7 856 321 339 92 0 chr9 35574373 35574482 -88501690 + MTD LTR MaLR 64 182 -237 7 856 228 250 60 45 chr9 35574533 35574600 -88501572 - MT-int LTR MaLR -996 102 35 7 856 382 167 28 0 chr9 35574642 35574714 -88501458 - MTD LTR MaLR 0 421 348 7 856 36604 43 0 3 chr9 35574715 35581278 -88494894 - L1Md_T LINE L1 0 6585 1 7 856 452 279 9 0 chr9 35581292 35581403 -88494769 - MTD LTR MaLR -115 304 193 7 856 1651 200 64 41 chr9 35581408 35581752 -88494420 - MTD LTR MaLR -56 363 12 8 856 990 230 124 8 chr9 35582649 35582908 -88493264 - MTD LTR MaLR -64 355 67 8 856 423 0 0 0 chr9 35586765 35586812 -88489360 + (CTAA)n Simple_repeat Simple_repeat 4 50 0 8 856 1797 254 55 18 chr9 35586866 35587375 -88488797 - Lx6 LINE L1 -336 7124 6597 8 856 17958 98 16 12 chr9 35587411 35587433 -88488739 - L1_Mur1 LINE L1 -1753 4133 4111 8 856 6213 132 37 70 chr9 35587433 35588479 -88487693 - Lx3A LINE L1 -1 6980 5912 8 856 1414 29 0 8 chr9 35588479 35588727 -88487445 + (TTC)n Simple_repeat Simple_repeat 1 245 0 8 856 6213 132 37 70 chr9 35588727 35588874 -88487298 - Lx3A LINE L1 -1070 5911 5827 8 856 17958 98 16 12 chr9 35588874 35590050 -88486122 - L1_Mur1 LINE L1 -1776 4110 2917 8 856 1214 61 0 0 chr9 35590050 35590197 -88485975 - B1_Mm SINE Alu 0 147 1 8 856 17958 111 21 12 chr9 35590197 35592785 -88483387 - L1_Mur1 LINE L1 -2970 2916 316 8 856 1556 201 18 30 chr9 35592842 35593181 -88482991 - Lx6 LINE L1 -856 6604 6270 8 856 197 222 16 0 chr9 35593308 35593371 -88482801 + (ATG)n Simple_repeat Simple_repeat 1 64 0 8 856 395 232 0 10 chr9 35593726 35593822 -88482350 - Lx7 LINE L1 -1417 6279 6185 8 856 1280 272 97 55 chr9 35594103 35594608 -88481564 + ORR1E-int LTR MaLR 843 1368 -2 9 856 868 308 20 76 chr9 35594608 35594949 -88481223 + ORR1E LTR MaLR 1 322 -37 9 856 501 337 15 5 chr9 35594950 35595153 -88481019 - Lx8 LINE L1 -358 7115 6911 9 856 1514 123 4 4 chr9 35595365 35595609 -88480563 + Lx LINE L1 6409 6652 -2 9 856 356 88 18 0 chr9 35596734 35596791 -88479381 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 856 28 29 0 0 chr9 35598430 35598465 -88477707 + AT_rich Low_complexity Low_complexity 1 35 0 9 856 591 168 0 5 chr9 35598465 35598576 -88477596 - B1_Mur1 SINE Alu -9 140 33 9 856 1566 162 19 0 chr9 35598759 35599025 -88477147 + ORR1A4 LTR MaLR 5 275 -54 9 856 859 201 5 91 chr9 35599022 35599219 -88476953 + ORR1A4 LTR MaLR 6 185 -144 9 856 1551 205 74 36 chr9 35599221 35599585 -88476587 - LSU-rRNA_Hsa rRNA rRNA -4568 467 90 9 856 781 184 59 6 chr9 35599621 35599790 -88476382 - ORR1A4-int LTR MaLR -1331 178 1 9 856 1625 199 22 0 chr9 35599790 35600112 -88476060 - ORR1A4 LTR MaLR 0 329 1 9 856 225 276 26 0 chr9 35600127 35600203 -88475969 - L1MC5 LINE L1 -1233 6728 6651 1 856 24 32 0 0 chr9 35600227 35600258 -88475914 + AT_rich Low_complexity Low_complexity 1 31 0 1 856 12727 165 109 15 chr9 35600441 35604422 -88471750 - Lx4B LINE L1 -7 7051 2683 1 856 1693 174 104 18 chr9 35604420 35604922 -88471250 - Lx4B LINE L1 -4182 1695 1156 1 856 3329 74 13 121 chr9 35604922 35605475 -88470697 - MT2_Mm LTR ERVL 0 493 1 1 856 1625 187 28 21 chr9 35605475 35605719 -88470453 - Lx4B LINE L1 -5931 1155 907 1 856 293 133 0 0 chr9 35605986 35606031 -88470141 - L1_Mur3 LINE L1 -4008 1872 1828 1 856 455 350 45 45 chr9 35607363 35607964 -88468208 + MuLV-int LTR ERV1 1137 1789 -5767 1 856 322 342 84 43 chr9 35608279 35608841 -88467331 + MuLV-int LTR ERV1 1922 2721 -4835 1 856 779 198 12 12 chr9 35608869 35609033 -88467139 + Lx3B LINE L1 6803 6966 -7 1 856 312 137 0 0 chr9 35609033 35609084 -88467088 + (TAA)n Simple_repeat Simple_repeat 1 51 0 1 856 510 339 38 22 chr9 35609111 35609425 -88466747 + MuLV-int LTR ERV1 2732 3050 -4556 1 856 300 206 82 0 chr9 35609447 35609520 -88466652 - L1M2 LINE L1 -3320 2823 2745 1 856 1135 90 0 0 chr9 35609859 35610004 -88466168 - B1_Mus1 SINE Alu -1 147 3 1 856 300 337 0 0 chr9 35610677 35610766 -88465406 + PB1D10 SINE Alu 27 115 -2 1 856 4093 108 38 0 chr9 35610895 35611615 -88464557 - L1VL2 LINE L1 -1790 1825 1079 1 856 28742 96 10 18 chr9 35611616 35616877 -88459295 + L1Md_F2 LINE L1 366 5585 -298 1 856 7095 90 10 5 chr9 35616878 35617868 -88458304 + L1Md_F2 LINE L1 5587 6581 -1 1 856 4235 98 34 18 chr9 35617868 35618642 -88457530 - L1VL2 LINE L1 -2524 1091 295 1 856 354 315 62 64 chr9 35618644 35619048 -88457124 + MMERGLN-int LTR ERV1 2857 3465 -4091 1 856 3126 137 86 4 chr9 35619366 35619888 -88456284 - Lx2 LINE L1 -15 6982 6418 1 856 1643 112 30 66 chr9 35619911 35620245 -88455927 - RLTRETN_Mm LTR ERVK 0 322 1 1 856 21229 81 20 43 chr9 35620245 35622025 -88454147 - MMETn-int LTR ERVK 0 4844 3138 1 856 3691 7 117 26 chr9 35622025 35622477 -88453695 - MT2_Mm LTR ERVL 0 493 1 1 856 21229 81 20 43 chr9 35622477 35624075 -88452097 - MMETn-int LTR ERVK -1707 3137 1544 1 856 4762 43 5 6 chr9 35624076 35624715 -88451457 - MMETn-int LTR ERVK -3614 1230 593 1 856 3448 62 0 7 chr9 35624712 35625168 -88451004 - MMETn-int LTR ERVK -2861 453 1 1 856 1560 108 79 60 chr9 35625168 35625484 -88450688 - RLTRETN_Mm LTR ERVK 0 322 1 1 856 1947 106 19 44 chr9 35625487 35625803 -88450369 - IAPLTR2b LTR ERVK -19 308 1 1 856 2148 193 17 13 chr9 35625803 35626276 -88449896 - Lx2 LINE L1 -574 6423 5949 1 856 4417 142 66 58 chr9 35626280 35627552 -88448620 - L1_Mus2 LINE L1 0 6566 5285 1 856 1109 140 0 0 chr9 35627553 35627732 -88448440 + L1_Mm LINE L1 5444 5622 -261 1 856 900 135 0 6 chr9 35627730 35627917 -88448255 - Lx2 LINE L1 -154 5729 5548 1 856 3714 128 103 150 chr9 35627917 35628892 -88447280 - RLTR13B3 LTR ERVK 0 929 1 1 856 9040 121 21 16 chr9 35628906 35630442 -88445730 - ETnERV3-int LTR ERVK -28 5780 4237 1 856 243 0 0 0 chr9 35630442 35630469 -88445703 + (A)n Simple_repeat Simple_repeat 1 27 0 1 856 226 234 43 0 chr9 35630477 35630524 -88445648 - RLTR13B1 LTR ERVK -844 49 1 1 856 532 164 91 0 chr9 35630524 35630634 -88445538 - Lx2 LINE L1 -330 5553 5434 1 856 31772 87 7 7 chr9 35630677 35636618 -88439554 - L1Md_F2 LINE L1 -12 6570 631 1 856 912 155 12 0 chr9 35636620 35636788 -88439384 - L1_Mur2 LINE L1 -423 5454 5285 1 856 7026 107 5 9 chr9 35636805 35638261 -88437911 - L1_Mus1 LINE L1 0 6567 5123 1 856 5921 111 67 75 chr9 35638257 35639238 -88436934 - L1_Mus1 LINE L1 -407 3507 2129 1 856 2839 130 89 46 chr9 35639238 35639710 -88436462 + MTA_Mm-int LTR MaLR 537 1042 -56 1 856 772 37 0 0 chr9 35639710 35639818 -88436354 + L1Md_T LINE L1 6475 6582 0 1 856 2839 130 89 46 chr9 35639818 35639884 -88436288 + MTA_Mm-int LTR MaLR 1043 1098 0 1 856 2850 84 13 3 chr9 35639884 35640276 -88435896 + MTA_Mm LTR MaLR 1 396 0 1 856 5648 138 122 179 chr9 35640276 35641733 -88434439 - L1_Mus1 LINE L1 -3755 2128 675 1 856 253 274 0 12 chr9 35641709 35641794 -88434378 - L1_Mus1 LINE L1 -6352 264 181 1 856 670 244 0 22 chr9 35642325 35642463 -88433709 + B1_Mur3 SINE Alu 4 138 -11 1 856 397 299 0 0 chr9 35642545 35642632 -88433540 - B1_Mur1 SINE Alu -13 136 50 1 856 341 303 61 39 chr9 35642699 35642929 -88433243 + L1MA7 LINE L1 3929 4163 -1977 1 856 305 390 21 21 chr9 35642996 35643279 -88432893 + L1MA7 LINE L1 4240 4522 -1621 1 856 834 312 24 58 chr9 35643384 35643973 -88432199 + L1MA7 LINE L1 5321 5889 -402 1 856 297 0 0 0 chr9 35643998 35644031 -88432141 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 856 462 310 33 40 chr9 35644321 35644472 -88431700 + ID_B1 SINE B4 12 161 -63 1 856 195 42 0 0 chr9 35645116 35645140 -88431032 + (TATG)n Simple_repeat Simple_repeat 1 24 0 1 856 408 153 0 0 chr9 35645224 35645309 -88430863 + CT-rich Low_complexity Low_complexity 1 85 0 1 856 341 330 30 64 chr9 35645309 35645604 -88430568 - Lx9 LINE L1 -288 7356 7072 1 856 563 330 47 13 chr9 35647358 35647741 -88428431 + L1M2 LINE L1 4750 5125 -1018 1 856 3496 301 68 52 chr9 35648492 35650716 -88425456 + Lx8 LINE L1 5076 7354 -119 1 856 554 277 61 15 chr9 35650822 35650954 -88425218 + RSINE1 SINE B4 2 139 -26 1 856 387 0 0 0 chr9 35650954 35650997 -88425175 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 856 229 355 44 26 chr9 35651099 35651212 -88424960 - MamRep1879 DNA hAT? -59 157 43 1 857 1013 49 7 14 chr9 35652261 35652407 -88423765 - L1Md_F2 LINE L1 0 6582 6438 1 857 276 143 36 0 chr9 35652408 35652492 -88423680 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 857 522 0 0 0 chr9 35653398 35653456 -88422716 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 857 341 247 61 10 chr9 35654432 35654530 -88421642 + MLT1A0 LTR MaLR 209 311 -54 1 857 677 221 8 0 chr9 35654555 35654686 -88421486 - B1_Mur3 SINE Alu 0 149 18 1 857 341 314 148 13 chr9 35654687 35654842 -88421330 - L1MC3 LINE L1 -171 7614 7439 1 857 21 0 0 0 chr9 35655347 35655368 -88420804 + AT_rich Low_complexity Low_complexity 1 21 0 1 857 238 26 51 0 chr9 35655983 35656022 -88420150 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 857 563 254 0 121 chr9 35656821 35657045 -88419127 + B3A SINE B2 2 198 0 1 857 1832 255 0 0 chr9 35658832 35659204 -88416968 - MTC LTR MaLR -2 419 48 1 857 1198 174 15 11 chr9 35659291 35659553 -88416619 + L1Md_F3 LINE L1 590 852 -5872 1 857 26424 57 3 2 chr9 35659557 35663154 -88413018 + L1Md_F3 LINE L1 1984 5585 -298 1 857 7897 42 4 8 chr9 35663155 35664139 -88412033 + L1Md_F3 LINE L1 5587 6566 -18 1 857 7363 69 3 1 chr9 35664211 35665589 -88410583 - L1Md_F2 LINE L1 -4 6578 5199 1 857 3213 80 2 9 chr9 35665588 35666054 -88410118 + L1Md_F2 LINE L1 4758 5220 -663 1 857 381 194 0 0 chr9 35666054 35666116 -88410056 - MTC LTR MaLR -359 62 1 1 857 508 282 69 19 chr9 35666402 35666561 -88409611 - MTD LTR MaLR -182 237 71 1 857 997 141 6 6 chr9 35666561 35666740 -88409432 + CT-rich Low_complexity Low_complexity 2 180 0 1 857 887 131 0 7 chr9 35666740 35666878 -88409294 - B1_Mus1 SINE Alu -9 139 3 1 857 681 267 322 50 chr9 35667355 35667718 -88408454 + Lx8 LINE L1 6759 7220 -253 1 857 267 370 0 0 chr9 35668002 35668083 -88408089 + ID4_ SINE ID 2 82 -1 1 857 218 158 34 68 chr9 35668305 35668393 -88407779 + T-rich Low_complexity Low_complexity 2 86 0 1 857 423 190 12 25 chr9 35668394 35668475 -88407697 - ID4 SINE ID -1 82 3 1 857 1306 202 16 4 chr9 35668487 35668740 -88407432 - Lx4A LINE L1 0 7058 6803 1 857 2556 104 12 0 chr9 35668740 35669143 -88407029 - L1_Mur2 LINE L1 -1740 4137 3730 1 857 1361 220 11 144 chr9 35669163 35669351 -88406821 - Lx7 LINE L1 0 7696 7510 1 857 207 0 0 0 chr9 35669351 35669374 -88406798 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 857 180 0 0 0 chr9 35669374 35669393 -88406779 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 857 1361 220 11 144 chr9 35669393 35669624 -88406548 - Lx7 LINE L1 -187 7509 7333 1 857 234 105 0 0 chr9 35669624 35669662 -88406510 + (CCA)n Simple_repeat Simple_repeat 1 38 0 1 857 1361 220 11 144 chr9 35669662 35669781 -88406391 - Lx7 LINE L1 -364 7332 7229 1 857 503 317 0 21 chr9 35670766 35670911 -88405261 + ID_B1 SINE B4 73 214 -10 1 857 360 0 0 0 chr9 35670916 35670956 -88405216 + (TAAG)n Simple_repeat Simple_repeat 4 43 0 1 857 327 260 68 68 chr9 35671067 35671228 -88404944 + L1MEg LINE L1 1059 1219 -4865 1 857 591 94 0 0 chr9 35671373 35671469 -88404703 + (TC)n Simple_repeat Simple_repeat 2 97 0 1 857 312 48 0 0 chr9 35671469 35671511 -88404661 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 857 294 397 8 0 chr9 35671645 35671766 -88404406 + RSINE1 SINE B4 6 127 -38 1 857 424 163 0 24 chr9 35673027 35673153 -88403019 + (CAGA)n Simple_repeat Simple_repeat 4 126 0 1 857 317 223 50 134 chr9 35673347 35673466 -88402706 - RMER5 LTR ERV1 -425 109 1 1 857 3516 176 40 17 chr9 35674169 35674875 -88401297 - Lx2 LINE L1 -261 6736 6015 1 857 5145 181 29 6 chr9 35674891 35676100 -88400072 - Lx2 LINE L1 -1081 5916 4667 1 857 4287 77 17 2 chr9 35676958 35677534 -88398638 - L1_Mus3 LINE L1 -4 6634 6050 1 857 5976 209 20 8 chr9 35678129 35679429 -88396743 + Lx5 LINE L1 5723 7037 -13 1 857 334 347 71 6 chr9 35679467 35679635 -88396537 - L1MC4a LINE L1 -25 7857 7679 1 857 361 305 118 4 chr9 35679810 35680073 -88396099 - L1MD2 LINE L1 -414 5945 5653 1 857 22 0 0 0 chr9 35680124 35680146 -88396026 + AT_rich Low_complexity Low_complexity 1 22 0 1 857 245 271 23 12 chr9 35680517 35680538 -88395634 + polypyrimidine Low_complexity Low_complexity 67 88 0 1 857 1084 114 6 6 chr9 35680538 35680715 -88395457 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1 857 245 271 23 12 chr9 35680715 35680779 -88395393 + CT-rich Low_complexity Low_complexity 2 66 0 1 857 546 287 119 54 chr9 35681328 35681663 -88394509 - Lx7 LINE L1 -396 7300 6944 1 857 1400 327 41 26 chr9 35681652 35682262 -88393910 - RMER1C Other Other -346 996 378 1 857 502 310 81 0 chr9 35682264 35682461 -88393711 - RMER1C Other Other -671 671 459 1 857 245 322 57 41 chr9 35682719 35682842 -88393330 - RMER1B Other Other -913 153 29 1 857 1351 253 157 2 chr9 35683003 35683474 -88392698 - Lx9 LINE L1 -1 7643 7100 1 857 585 165 18 0 chr9 35683475 35683584 -88392588 - RLTR11A LTR ERVK 0 528 418 1 857 267 330 11 0 chr9 35683705 35683793 -88392379 + GA-rich Low_complexity Low_complexity 3 91 0 1 857 21 36 0 0 chr9 35683982 35684010 -88392162 + AT_rich Low_complexity Low_complexity 1 28 0 1 857 22 35 0 0 chr9 35684064 35684093 -88392079 + AT_rich Low_complexity Low_complexity 1 29 0 1 857 7341 68 5 1 chr9 35684301 35685424 -88390748 - L1_Mus1 LINE L1 0 6654 5450 1 857 33 43 0 0 chr9 35685618 35685665 -88390507 + AT_rich Low_complexity Low_complexity 1 47 0 1 857 24 32 0 0 chr9 35685958 35685989 -88390183 + AT_rich Low_complexity Low_complexity 1 31 0 1 857 4551 106 3 18 chr9 35686001 35686676 -88389496 - L1_Mus3 LINE L1 -2 6636 5972 1 857 4696 143 13 2 chr9 35686676 35687495 -88388677 - L1_Mm LINE L1 -143 5740 4913 1 857 36263 30 1 1 chr9 35687488 35694997 -88381175 - L1Md_T LINE L1 0 6585 1 1 857 605 156 101 22 chr9 35695003 35695141 -88381031 + RMER17B LTR ERVK 315 463 -495 1 857 7711 185 38 23 chr9 35695156 35696909 -88379263 - L1_Mur2 LINE L1 -957 4920 3143 1 857 899 302 43 40 chr9 35697466 35697818 -88378354 - Lx8 LINE L1 -28 7445 7093 1 857 340 333 71 8 chr9 35697830 35697957 -88378215 + B3A SINE B2 64 198 0 2 857 907 66 0 8 chr9 35698455 35698567 -88377605 + B1_Mus1 SINE Alu 27 138 -10 2 857 357 43 0 0 chr9 35698567 35698614 -88377558 + (CAA)n Simple_repeat Simple_repeat 2 48 0 2 857 271 0 0 49 chr9 35700354 35700395 -88375777 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 857 541 261 9 0 chr9 35700600 35700715 -88375457 + B1_Mur1 SINE Alu 27 142 -7 2 857 797 320 51 27 chr9 35701527 35701858 -88374314 - MLT1B LTR MaLR -2 388 50 2 857 238 222 0 53 chr9 35703006 35703063 -88373109 - MTE2b LTR MaLR -8 371 318 2 857 3411 163 20 62 chr9 35703071 35703855 -88372317 - RMER17A LTR ERVK 0 751 1 2 857 2516 42 13 63 chr9 35703856 35703893 -88372279 - RMER17A-int LTR ERVK 0 1728 1693 2 857 2948 87 13 0 chr9 35703893 35704284 -88371888 + MTA_Mm LTR MaLR 1 396 0 2 857 2516 42 13 63 chr9 35704284 35704627 -88371545 - RMER17A-int LTR ERVK -36 1692 1367 2 857 2550 61 3 0 chr9 35704627 35704969 -88371203 + RMER17A-int LTR ERVK 891 1233 -495 2 857 385 237 248 14 chr9 35705066 35705207 -88370965 - MTE2b LTR MaLR -205 174 1 2 857 5955 102 32 3 chr9 35706338 35707835 -88368337 - L1_Mus1 LINE L1 -3 6564 5009 2 857 6299 114 5 11 chr9 35707834 35709752 -88366420 - L1Md_A LINE L1 -3757 2126 242 2 857 883 266 158 6 chr9 35709873 35710195 -88365977 + MTEa LTR MaLR 1 371 -8 2 857 681 309 100 44 chr9 35711342 35711663 -88364509 + MLT1B LTR MaLR 50 388 -2 2 857 473 295 9 9 chr9 35712484 35712597 -88363575 - B1_Mur1 SINE Alu -6 143 31 2 857 532 245 86 0 chr9 35715622 35715773 -88360399 + ORR1A4 LTR MaLR 166 329 0 2 857 332 32 48 16 chr9 35717275 35717338 -88358834 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 2 857 216 0 0 0 chr9 35718269 35718293 -88357879 + (TAA)n Simple_repeat Simple_repeat 3 26 0 2 857 21011 103 22 17 chr9 35718385 35722404 -88353768 - Lx3_Mus LINE L1 -1 7008 3023 2 857 2129 97 16 3 chr9 35722404 35722716 -88353456 + L1_Mus3 LINE L1 6312 6627 -11 2 857 17340 116 121 48 chr9 35722716 35725533 -88350639 - Lx3_Mus LINE L1 -2884 3002 39 2 857 231 61 0 0 chr9 35725809 35725842 -88350330 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 2 857 4836 185 31 38 chr9 35726675 35727681 -88348491 - RLTR21 LTR ERVK -476 1096 98 2 857 406 185 15 0 chr9 35728287 35728417 -88347755 + (TG)n Simple_repeat Simple_repeat 1 132 0 2 857 272 396 9 0 chr9 35729733 35729844 -88346328 - RSINE1 SINE B4 -48 117 6 2 857 6474 58 1 21 chr9 35729983 35730822 -88345350 + RLTR13B2 LTR ERVK 1 822 0 2 857 432 0 0 0 chr9 35730822 35730870 -88345302 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 857 322 316 19 56 chr9 35731028 35731189 -88344983 - L1MEg LINE L1 -4870 1214 1060 2 857 288 91 0 0 chr9 35731298 35731342 -88344830 + (CTTA)n Simple_repeat Simple_repeat 4 47 0 2 857 5272 117 25 10 chr9 35731583 35732199 -88343973 + L1VL1 LINE L1 1086 1714 -4169 2 857 4625 63 5 0 chr9 35732199 35732783 -88343389 - LTRIS_Mus LTR ERV1 0 587 1 2 857 5272 113 27 10 chr9 35732783 35733176 -88342996 + L1VL1 LINE L1 1715 2110 -3773 2 857 6049 37 6 1 chr9 35733208 35733941 -88342231 + L1Md_F3 LINE L1 5834 6569 -15 2 857 357 280 54 0 chr9 35734978 35735071 -88341101 + RSINE1 SINE B4 15 112 -53 2 857 2745 174 11 0 chr9 35735552 35736030 -88340142 + Lx4A LINE L1 6570 7052 -6 2 857 1754 109 8 0 chr9 35736411 35736668 -88339504 + MTB LTR MaLR 1 259 -141 2 857 556 224 75 0 chr9 35736668 35736802 -88339370 - Lx5 LINE L1 -806 6244 6101 2 857 22 0 0 0 chr9 35736865 35736887 -88339285 + AT_rich Low_complexity Low_complexity 1 22 0 2 857 486 216 42 25 chr9 35737510 35737629 -88338543 + ORR1D2 LTR MaLR 248 368 -2 2 857 2801 182 129 0 chr9 35737636 35738234 -88337938 - RLTR33 LTR ERVK -3 675 1 2 857 621 187 65 29 chr9 35738583 35738721 -88337451 + RMER6B LTR ERVK 319 461 0 2 857 274 282 78 43 chr9 35739093 35739208 -88336964 + MMERGLN-int LTR ERV1 2105 2223 -5378 2 857 2712 72 3 0 chr9 35739235 35739580 -88336592 - ORR1A1 LTR MaLR 0 346 1 2 857 489 311 0 0 chr9 35739876 35740011 -88336161 + MMERGLN-int LTR ERV1 2990 3124 -4432 2 857 747 227 7 0 chr9 35740052 35740193 -88335979 + RLTR19-int LTR ERVK 4245 4386 -1751 2 857 418 136 0 0 chr9 35740180 35740246 -88335926 + RLTR19-int LTR ERVK 6071 6136 -1 2 857 1024 242 129 74 chr9 35740247 35740364 -88335808 + RLTR19 LTR ERVK 1 157 -342 2 857 1461 53 0 0 chr9 35740364 35740724 -88335448 + (GGAGAA)n Simple_repeat Simple_repeat 1 360 0 2 857 1024 242 129 74 chr9 35740724 35741078 -88335094 + RLTR19 LTR ERVK 158 498 -1 2 857 915 290 94 25 chr9 35741165 35741220 -88334952 + L1MCa LINE L1 1426 1478 -5030 2 857 1864 194 104 5 chr9 35741220 35741603 -88334569 + MTC LTR MaLR 1 421 0 2 857 915 290 94 25 chr9 35741603 35742195 -88333977 + L1MCa LINE L1 1479 2118 -4390 2 857 2806 212 71 50 chr9 35742196 35743068 -88333104 - Lx9 LINE L1 -1 7643 6754 2 857 520 250 133 11 chr9 35743069 35743340 -88332832 + L1MCa LINE L1 2109 2412 -4096 2 857 314 276 65 0 chr9 35743465 35743588 -88332584 + L1MCa LINE L1 2434 2564 -3757 2 857 680 250 104 6 chr9 35743682 35744036 -88332136 + L1MCa LINE L1 2864 3252 -3069 2 857 1070 302 62 15 chr9 35744023 35744477 -88331695 + L1MCa LINE L1 5463 5937 -571 2 857 846 258 98 0 chr9 35744505 35744730 -88331442 + MTE2b LTR MaLR 129 375 -4 2 857 2026 102 2 9 chr9 35744787 35745133 -88331039 - Lx3A LINE L1 -932 6049 5658 2 857 5112 127 67 2 chr9 35745146 35746008 -88330164 + Lx3A LINE L1 6064 6981 0 2 857 24 0 0 0 chr9 35746009 35746033 -88330139 + AT_rich Low_complexity Low_complexity 1 24 0 2 857 228 260 28 65 chr9 35746075 35746104 -88330068 + L1M1 LINE L1 5431 5454 -849 2 857 487 330 46 0 chr9 35746104 35746301 -88329871 - B3 SINE B2 -10 206 1 2 857 228 260 28 65 chr9 35746301 35746378 -88329794 + L1M1 LINE L1 5455 5532 -771 2 857 438 271 19 0 chr9 35746375 35746530 -88329642 - L1_Mur3 LINE L1 -1588 4292 4135 2 857 1837 185 55 5 chr9 35746544 35746946 -88329226 + BGLII_Mus LTR ERVK 1 422 0 2 857 1391 75 5 0 chr9 35747169 35747355 -88328817 + B2_Mm1a SINE B2 4 190 -3 2 857 726 144 0 23 chr9 35748068 35748196 -88327976 - RLTR15 LTR ERVK 0 359 235 2 857 6240 155 15 15 chr9 35748212 35749331 -88326841 - Lx2 LINE L1 -6 6991 5873 2 857 3036 206 63 12 chr9 35749419 35750074 -88326098 - RLTR17 LTR ERVK 0 692 5 2 857 1590 174 0 18 chr9 35750089 35750375 -88325797 + L1_Mm LINE L1 4661 4941 -942 2 857 3061 122 2 2 chr9 35750375 35750812 -88325360 + RLTR9B LTR ERVK 1 437 0 2 857 329 305 67 25 chr9 35750893 35751132 -88325040 + ETnERV-int LTR ERVK 72 320 -2994 2 857 481 30 15 15 chr9 35751132 35751200 -88324972 + (TAAAA)n Simple_repeat Simple_repeat 4 71 0 2 857 282 115 0 0 chr9 35751207 35751259 -88324913 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 857 1563 170 173 91 chr9 35751259 35751732 -88324440 + RLTR45-int LTR ERVK 2070 2581 -4663 2 857 7894 151 96 50 chr9 35751709 35751977 -88324195 + ETnERV2-int LTR ERVK 2332 2620 -4786 2 857 305 0 50 0 chr9 35751977 35752017 -88324155 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 857 7894 151 96 50 chr9 35752017 35752523 -88323649 + ETnERV2-int LTR ERVK 2621 3170 -4236 2 857 183 297 125 0 chr9 35752523 35752587 -88323585 - MER5A DNA MER1_type -109 80 9 2 857 7894 151 96 50 chr9 35752587 35753433 -88322739 + ETnERV2-int LTR ERVK 3171 4093 -3313 2 857 1048 112 0 0 chr9 35753406 35753558 -88322614 + ETnERV2-int LTR ERVK 4590 4741 -2503 2 857 2787 134 30 43 chr9 35753559 35754095 -88322077 - RLTR45-int LTR ERVK -2110 5134 4606 2 857 39771 22 0 6 chr9 35754095 35759893 -88316279 + L1Md_A LINE L1 624 6378 -204 2 857 1720 68 4 13 chr9 35759890 35760131 -88316041 + L1_Mm LINE L1 4382 4610 -1273 2 857 180 0 0 0 chr9 35760150 35760170 -88316002 + (T)n Simple_repeat Simple_repeat 1 20 0 2 857 2072 151 98 15 chr9 35760170 35760618 -88315554 - RLTR45-int LTR ERVK -3381 4025 3541 2 857 2766 100 26 62 chr9 35760620 35761088 -88315084 - L1_Mus3 LINE L1 -1 6637 6187 2 857 3298 112 2 49 chr9 35761183 35761710 -88314462 - L1Md_F2 LINE L1 0 6582 6081 2 857 32658 80 10 1 chr9 35761710 35766281 -88309891 - L1Md_F2 LINE L1 -2 6580 1963 2 857 408 20 0 0 chr9 35766281 35766330 -88309842 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 857 32658 81 15 1 chr9 35766330 35767874 -88308298 - L1Md_F2 LINE L1 -3921 1962 398 2 857 243 340 158 28 chr9 35768838 35769092 -88307080 + ORR1E LTR MaLR 38 324 -35 2 857 592 244 8 0 chr9 35770434 35770557 -88305615 + Lx4B LINE L1 6822 6945 -113 2 857 1190 100 0 6 chr9 35770619 35770800 -88305372 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 857 847 347 61 29 chr9 35771223 35771844 -88304328 + Lx8 LINE L1 6635 7275 -198 2 857 2515 226 29 30 chr9 35772236 35773210 -88302962 + Lx7 LINE L1 573 1544 -4336 2 857 32 43 0 0 chr9 35773243 35773289 -88302883 + AT_rich Low_complexity Low_complexity 1 46 0 2 857 4446 150 32 2 chr9 35773344 35774168 -88302004 + Lx7 LINE L1 3545 4392 -1485 2 857 1348 269 62 33 chr9 35774206 35774660 -88301512 + RMER19C LTR ERVK 145 611 0 2 857 4294 229 42 125 chr9 35774660 35774882 -88301290 + Lx7 LINE L1 4386 4623 -1254 2 857 246 32 0 0 chr9 35774882 35774913 -88301259 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 857 4294 229 42 125 chr9 35774913 35775571 -88300601 + Lx7 LINE L1 4624 5250 -627 2 857 385 221 148 50 chr9 35775571 35775714 -88300458 + ORR1D1 LTR MaLR 202 366 -8 2 857 4294 229 42 125 chr9 35775714 35775730 -88300442 + Lx7 LINE L1 5251 5267 -610 2 857 405 0 0 0 chr9 35775730 35775775 -88300397 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 857 4294 261 50 71 chr9 35775775 35777012 -88299160 + Lx7 LINE L1 5268 6563 -1133 2 857 2587 145 5 2 chr9 35777578 35777980 -88298192 - RLTR9D LTR ERVK 0 403 1 2 857 3468 83 0 0 chr9 35778107 35778564 -88297608 - L1_Mus2 LINE L1 -2 6564 6108 2 857 212 324 42 0 chr9 35778635 35778706 -88297466 - ID SINE ID -142 82 9 2 857 1063 95 7 0 chr9 35778812 35778959 -88297213 + B1_Mus1 SINE Alu 1 148 0 2 857 227 79 0 26 chr9 35778972 35779011 -88297161 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 2 857 912 135 0 0 chr9 35779203 35779351 -88296821 + (TCCC)n Simple_repeat Simple_repeat 3 150 0 2 857 998 129 0 0 chr9 35779357 35779504 -88296668 - B1_Mus2 SINE Alu 0 147 1 2 857 338 344 7 97 chr9 35779505 35779650 -88296522 + MTD LTR MaLR 109 240 -179 2 107 16678 88 2 3 chr9 35779772 35782874 -88293298 - L1Md_F2 LINE L1 -3 6579 3482 2 858 236 30 30 0 chr9 35782893 35782926 -88293246 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 858 571 292 73 64 chr9 35782982 35783216 -88292956 + MTD LTR MaLR 5 240 -179 2 858 422 287 74 29 chr9 35783475 35783674 -88292498 + MTD LTR MaLR 206 405 -14 2 858 24 53 0 0 chr9 35783953 35783991 -88292181 + AT_rich Low_complexity Low_complexity 1 38 0 2 858 651 251 40 0 chr9 35784168 35784367 -88291805 + Lx9 LINE L1 7205 7411 -233 2 858 7535 38 8 0 chr9 35785461 35786411 -88289761 - L1Md_T LINE L1 0 6582 5625 2 858 3214 188 51 21 chr9 35786840 35787300 -88288872 + RLTR17 LTR ERVK 3 482 -210 2 858 6630 48 7 61 chr9 35787300 35788204 -88287968 - RLTR13A LTR ERVK 0 855 1 2 858 3214 188 51 21 chr9 35788204 35788413 -88287759 + RLTR17 LTR ERVK 483 692 0 2 858 1399 176 65 4 chr9 35788500 35788762 -88287410 + RLTR15 LTR ERVK 6 283 -76 3 858 5984 163 33 14 chr9 35788762 35789859 -88286313 + Lx2 LINE L1 5880 6997 0 3 858 2414 81 59 0 chr9 35789905 35790228 -88285944 - ORR1A1 LTR MaLR -4 342 1 3 858 663 85 32 0 chr9 35790228 35790322 -88285850 - ORR1A1-int LTR MaLR 0 1792 1696 3 858 2921 83 10 2 chr9 35790368 35790766 -88285406 - L1_Mus1 LINE L1 0 6567 6167 3 858 563 89 0 0 chr9 35790767 35790846 -88285326 + L1_Mus1 LINE L1 6101 6179 -388 3 858 11617 89 9 7 chr9 35790846 35792550 -88283622 - ORR1A1-int LTR MaLR -84 1708 1 3 858 2517 93 0 14 chr9 35792554 35792901 -88283271 - ORR1A1 LTR MaLR -4 342 1 3 858 514 165 0 20 chr9 35792902 35793001 -88283171 + RLTR15 LTR ERVK 263 359 0 3 858 2086 171 29 15 chr9 35793913 35794011 -88282161 - BGLII_Mus LTR ERVK -7 415 320 3 858 3053 81 2 0 chr9 35794011 35794404 -88281768 + MTA_Mm LTR MaLR 3 396 0 3 858 6937 88 23 74 chr9 35794404 35795561 -88280611 + MTA_Mm-int LTR MaLR 1 1098 0 3 858 3220 51 2 2 chr9 35795561 35795957 -88280215 + MTA_Mm LTR MaLR 1 396 0 3 858 2086 171 29 15 chr9 35795957 35796265 -88279907 - BGLII_Mus LTR ERVK -103 319 3 3 858 2933 192 73 7 chr9 35796267 35797073 -88279099 - MYSERV16_I-int LTR ERVK -2 2324 1466 3 858 7634 54 6 10 chr9 35797073 35798119 -88278053 - L1Md_F2 LINE L1 -1 6581 5572 3 858 1742 231 63 41 chr9 35798132 35799068 -88277104 - MYSERV16_I-int LTR ERVK -924 1402 411 3 858 2101 246 41 21 chr9 35799094 35799915 -88276257 - MYSERV6-int LTR ERVK -1924 4626 3796 3 858 2345 211 19 7 chr9 35799918 35800458 -88275714 - MYSERV6-int LTR ERVK -5131 3828 3283 3 858 647 307 24 33 chr9 35800491 35800828 -88275344 - L1MCa LINE L1 -689 5819 5486 3 858 700 241 92 20 chr9 35800807 35801200 -88274972 - L1MCa LINE L1 -3037 3284 2864 3 858 230 234 83 60 chr9 35801279 35801385 -88274787 - L1MCa LINE L1 -3725 2596 2478 3 858 2468 71 25 48 chr9 35801385 35801739 -88274433 - ORR1A1 LTR MaLR 0 346 1 3 858 230 234 83 60 chr9 35801739 35801800 -88274372 - L1MCa LINE L1 -3844 2477 2425 3 858 333 93 0 0 chr9 35801857 35801911 -88274261 + (CAAT)n Simple_repeat Simple_repeat 1 54 0 3 858 282 315 92 0 chr9 35801942 35802202 -88273970 - L1MCa LINE L1 -4096 2412 2129 3 858 2813 202 64 55 chr9 35802216 35803090 -88273082 + Lx9 LINE L1 6754 7635 -9 3 858 1015 267 79 30 chr9 35803106 35803700 -88272472 - L1MCa LINE L1 -4395 2113 1480 3 858 2137 176 71 0 chr9 35803700 35804093 -88272079 - MTC LTR MaLR 0 421 1 3 858 1015 267 79 30 chr9 35804093 35804142 -88272030 - L1MCa LINE L1 -5029 1479 1438 3 858 924 270 44 79 chr9 35804236 35804554 -88271618 - RLTR19 LTR ERVK 0 499 193 3 858 4975 97 19 0 chr9 35804554 35805439 -88270733 - L1_Mus2 LINE L1 -224 6342 5442 3 858 10551 129 3 7 chr9 35805442 35807254 -88268918 - L1_Mus2 LINE L1 -2160 3723 1919 3 858 638 269 14 48 chr9 35807762 35807969 -88268203 - RMER6B LTR ERVK -2 459 260 3 858 347 270 56 0 chr9 35808419 35808508 -88267664 - RSINE1 SINE B4 -51 114 21 3 858 768 261 196 6 chr9 35809685 35809997 -88266175 + MTEa LTR MaLR 1 371 -8 3 858 806 330 46 20 chr9 35811132 35811478 -88264694 + MLT1B LTR MaLR 34 388 -2 3 858 508 309 7 0 chr9 35812300 35812439 -88263733 - B1_Mur1 SINE Alu -5 144 5 3 858 4787 57 19 3 chr9 35813491 35814087 -88262085 + RLTR1D LTR ERV1 1 605 0 3 858 2316 244 111 62 chr9 35814286 35815146 -88261026 + RLTR13D6 LTR ERVK 1 902 0 3 858 288 176 0 0 chr9 35815869 35815937 -88260235 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 858 1639 156 115 0 chr9 35817877 35818172 -88258000 + ORR1A4 LTR MaLR 1 329 0 3 858 6309 91 1 9 chr9 35818388 35819090 -88257082 + L1Md_F2 LINE L1 342 1043 -5573 3 858 1976 72 189 38 chr9 35819090 35819407 -88256765 + RLTR10B2 LTR ERVK 1 365 0 3 858 11544 88 5 2 chr9 35819407 35820338 -88255834 + L1Md_F2 LINE L1 1044 1969 -3914 3 858 293 0 27 0 chr9 35820338 35820375 -88255797 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 858 11544 87 6 1 chr9 35820375 35821361 -88254811 + L1Md_F2 LINE L1 1970 2962 -2921 3 858 39340 6 0 0 chr9 35821363 35827743 -88248429 - L1Md_A LINE L1 0 6582 202 3 858 5525 96 0 8 chr9 35827742 35828590 -88247582 + L1Md_F2 LINE L1 2951 3791 -2092 3 858 6694 58 2 2 chr9 35828586 35829479 -88246693 + L1Md_F2 LINE L1 4694 5586 -297 3 858 8057 48 3 0 chr9 35829479 35830460 -88245712 + L1Md_F2 LINE L1 5587 6570 -12 3 858 12833 92 5 2 chr9 35830467 35832360 -88243812 + L1Md_F2 LINE L1 3688 5586 -297 3 858 7365 75 11 8 chr9 35832361 35833341 -88242831 + L1Md_F2 LINE L1 5588 6570 -12 3 858 20902 192 11 14 chr9 35833344 35836974 -88239198 + Lx LINE L1 1210 4861 -1022 3 858 890 78 0 8 chr9 35836974 35837103 -88239069 + (TTTTC)n Simple_repeat Simple_repeat 2 129 0 3 858 6922 127 31 15 chr9 35837107 35838262 -88237910 - Lx3_Mus LINE L1 -18 6991 5818 3 858 20902 173 24 9 chr9 35838262 35840049 -88236123 + Lx LINE L1 4862 6648 -6 3 858 30577 87 13 17 chr9 35840144 35845348 -88230824 + L1Md_F2 LINE L1 446 5586 -297 3 858 7622 69 2 9 chr9 35845348 35846280 -88229892 + L1Md_F2 LINE L1 5587 6520 -62 3 858 2659 95 59 5 chr9 35846280 35846670 -88229502 + RLTR10A LTR ERVK 1 411 0 3 858 7622 69 2 9 chr9 35846670 35846740 -88229432 + L1Md_F2 LINE L1 6521 6582 0 3 858 9625 185 12 33 chr9 35848226 35850460 -88225712 + L1_Mur2 LINE L1 3156 5343 -534 3 858 504 45 0 0 chr9 35850724 35850791 -88225381 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 858 333 68 0 0 chr9 35850825 35850869 -88225303 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 858 541 305 68 75 chr9 35851111 35851419 -88224753 - MLT1A0 LTR MaLR -45 320 15 3 858 6086 181 58 6 chr9 35851586 35852855 -88223317 - Lx2 LINE L1 -3 6994 5661 3 858 303 302 10 10 chr9 35852966 35853063 -88223109 + CT-rich Low_complexity Low_complexity 5 101 0 3 858 21 0 0 0 chr9 35853130 35853151 -88223021 + AT_rich Low_complexity Low_complexity 1 21 0 3 858 489 206 10 0 chr9 35853180 35853282 -88222890 + RLTR11A LTR ERVK 422 524 -4 3 858 1507 256 134 2 chr9 35853282 35853768 -88222404 + Lx9 LINE L1 7094 7643 -1 3 858 581 361 52 3 chr9 35854264 35854550 -88221622 + RMER1C Other Other 382 681 -661 3 858 2458 289 47 26 chr9 35854552 35855464 -88220708 + RMER1C Other Other 389 1319 -23 3 858 215 191 41 41 chr9 35855552 35855601 -88220571 + B4 SINE B4 34 82 -210 3 858 411 21 0 0 chr9 35856284 35856332 -88219840 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 858 441 295 27 0 chr9 35856529 35856678 -88219494 + L1M4 LINE L1 3026 3178 -2968 3 858 1544 261 61 0 chr9 35856688 35857018 -88219154 + MTC LTR MaLR 6 346 -75 3 858 2136 175 18 53 chr9 35857018 35857453 -88218719 - RLTR9B2 LTR ERVK 0 420 1 3 858 1544 261 61 0 chr9 35857453 35857467 -88218705 + MTC LTR MaLR 347 370 -51 3 858 323 113 0 36 chr9 35857473 35857528 -88218644 - ETnERV2-int LTR ERVK -23 7383 7331 3 858 642 244 18 0 chr9 35857739 35857907 -88218265 - ETnERV2-int LTR ERVK -981 6425 6255 3 858 2143 174 0 20 chr9 35857971 35858376 -88217796 - ETnERV2-int LTR ERVK -1179 6227 5831 3 858 10138 233 38 14 chr9 35859349 35862558 -88213614 - ETnERV2-int LTR ERVK -1559 5847 1790 3 858 1064 197 23 0 chr9 35862852 35863070 -88213102 - Lx2 LINE L1 0 6997 6775 3 858 1711 168 14 0 chr9 35863073 35863365 -88212807 - Lx2 LINE L1 -357 6640 6345 3 858 2875 46 0 3 chr9 35863365 35863711 -88212461 + IAPLTR4 LTR ERVK 1 345 0 3 858 4309 125 40 12 chr9 35863733 35864478 -88211694 + RMER17A LTR ERVK 1 751 0 3 858 1111 141 9 49 chr9 35864478 35864702 -88211470 + RMER17A-int LTR ERVK 1 215 -1513 3 858 207 0 0 0 chr9 35864818 35864841 -88211331 + (T)n Simple_repeat Simple_repeat 1 23 0 3 858 268 103 26 0 chr9 35864874 35864913 -88211259 - B1_Mus1 SINE Alu -105 43 4 3 858 2908 220 55 18 chr9 35865585 35866204 -88209968 + RLTR26 LTR ERVK 1 642 0 3 858 530 268 9 0 chr9 35866452 35866564 -88209608 + B1F2 SINE Alu 31 143 -6 3 858 785 282 109 19 chr9 35867387 35867698 -88208474 - MLT1B LTR MaLR -2 388 50 3 858 784 284 158 6 chr9 35868843 35869165 -88207007 - MTEa LTR MaLR -8 371 1 3 858 363 320 156 0 chr9 35870319 35870447 -88205725 + RSINE1 SINE B4 15 162 -3 3 858 1035 175 16 0 chr9 35870874 35871068 -88205104 + Lx4A LINE L1 6570 6766 -292 3 858 1881 248 216 5 chr9 35871315 35872094 -88204078 - Lx5 LINE L1 -5 7045 6060 3 858 24 0 0 0 chr9 35872155 35872179 -88203993 + AT_rich Low_complexity Low_complexity 1 24 0 3 858 409 69 56 0 chr9 35872839 35872911 -88203261 + (CAAAA)n Simple_repeat Simple_repeat 2 77 0 3 858 347 162 29 0 chr9 35872911 35872979 -88203193 + ORR1D2 LTR MaLR 298 367 -3 3 858 2818 190 122 0 chr9 35872984 35873588 -88202584 - RLTR33 LTR ERVK 0 678 1 3 858 475 198 145 38 chr9 35873912 35874043 -88202129 + RMER6B LTR ERVK 303 447 -14 3 858 30581 32 0 1 chr9 35874072 35876222 -88199950 - L1Md_A LINE L1 -1 6581 4437 3 858 1685 26 0 0 chr9 35876222 35876414 -88199758 - B2_Mm1t SINE B2 0 193 2 3 858 30581 28 0 2 chr9 35876414 35878781 -88197391 - L1Md_A LINE L1 -1447 4436 2071 3 858 38420 21 0 6 chr9 35878816 35884901 -88191271 - L1Md_A LINE L1 -1 6581 538 3 858 468 62 0 0 chr9 35884982 35885046 -88191126 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 858 186 250 20 20 chr9 35885191 35885240 -88190932 - L3 LINE CR1 -3520 969 921 3 858 423 319 0 0 chr9 35885770 35885905 -88190267 + MMERGLN-int LTR ERV1 2990 3124 -4432 3 858 669 242 13 0 chr9 35885946 35886095 -88190077 + RLTR19-int LTR ERVK 4245 4395 -1742 3 858 339 131 16 0 chr9 35886074 35886135 -88190037 + RLTR19-int LTR ERVK 6071 6132 -5 3 858 1050 223 46 26 chr9 35886140 35886261 -88189911 + RLTR19 LTR ERVK 1 169 -330 3 858 1010 134 0 11 chr9 35886261 35886435 -88189737 + (GGA)n Simple_repeat Simple_repeat 3 174 0 3 858 1050 288 85 47 chr9 35886435 35886758 -88189414 + RLTR19 LTR ERVK 170 493 -6 3 858 904 276 93 21 chr9 35886840 35886893 -88189279 + L1MCa LINE L1 1428 1482 -5026 3 858 1811 195 108 0 chr9 35886893 35887273 -88188899 + MTC LTR MaLR 1 421 0 3 858 904 276 93 21 chr9 35887273 35887830 -88188342 + L1MCa LINE L1 1483 2082 -4426 3 858 2667 210 80 42 chr9 35887862 35888712 -88187460 - Lx9 LINE L1 -9 7635 6754 3 858 334 279 135 8 chr9 35888713 35888980 -88187192 + L1MCa LINE L1 2109 2409 -4099 3 858 201 94 0 0 chr9 35889013 35889045 -88187127 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 3 858 476 254 109 0 chr9 35889631 35889832 -88186340 + L1MCa LINE L1 2434 2656 -3665 3 858 1101 265 112 22 chr9 35889847 35890434 -88185738 + L1MCa LINE L1 5463 5712 -796 3 858 2612 76 6 3 chr9 35890434 35890779 -88185393 - ORR1A1 LTR MaLR 0 346 1 3 858 1101 287 48 23 chr9 35890779 35890969 -88185203 + L1MCa LINE L1 5713 5915 -593 3 858 886 229 91 74 chr9 35890976 35891262 -88184910 + MTE2b LTR MaLR 95 376 -3 3 858 254 188 15 15 chr9 35891318 35891383 -88184789 - Lx3A LINE L1 -932 6049 5985 3 858 2030 82 17 0 chr9 35891371 35891665 -88184507 - Lx3_Mus LINE L1 -1053 5956 5658 3 858 5357 138 37 6 chr9 35891678 35892565 -88183607 + Lx3A LINE L1 6064 6978 -3 3 858 619 296 39 10 chr9 35892627 35892835 -88183337 - B3 SINE B2 0 216 3 3 858 457 261 20 1 chr9 35892910 35893081 -88183091 - L1_Mur2 LINE L1 -1816 4330 4133 3 858 2029 172 37 5 chr9 35893084 35893493 -88182679 + BGLII_Mus LTR ERVK 1 422 0 3 858 742 128 0 23 chr9 35894388 35894516 -88181656 - RLTR15 LTR ERVK 0 359 235 3 858 6243 151 29 17 chr9 35894525 35895637 -88180535 - Lx2 LINE L1 0 6997 5873 3 858 1898 96 35 25 chr9 35895646 35895965 -88180207 - RLTRETN_Mm LTR ERVK 0 322 1 3 858 17592 144 29 19 chr9 35895965 35902800 -88173372 - ETnERV2-int LTR ERVK -107 7299 1 3 858 1877 100 35 25 chr9 35902800 35903119 -88173053 - RLTRETN_Mm LTR ERVK 0 322 1 3 858 1328 165 68 4 chr9 35903119 35903369 -88172803 - RLTR15 LTR ERVK -88 271 6 3 858 3021 207 51 15 chr9 35903455 35904122 -88172050 - RLTR17 LTR ERVK 0 692 2 3 858 587 257 29 19 chr9 35905645 35905851 -88170321 - Lx9 LINE L1 -232 7412 7205 3 858 313 233 25 51 chr9 35905896 35906054 -88170118 + Lx9 LINE L1 7490 7643 -1 3 858 269 51 0 25 chr9 35906253 35906293 -88169879 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 858 1116 241 96 7 chr9 35906661 35907099 -88169073 - L1_Mur3 LINE L1 -4030 1850 1374 3 858 468 297 62 43 chr9 35907270 35907481 -88168691 + MTC LTR MaLR 199 413 -8 3 858 676 256 43 24 chr9 35907485 35907693 -88168479 + MTC-int LTR MaLR 1 212 -1046 3 858 323 328 139 5 chr9 35907935 35908137 -88168035 - L1M4 LINE L1 -3663 2483 2255 3 858 629 292 77 72 chr9 35908164 35908610 -88167562 - RMER2 LTR ERV1 -16 551 1 3 858 1062 259 62 17 chr9 35908663 35909021 -88167151 - ORR1D1 LTR MaLR 0 374 1 4 858 2499 248 34 7 chr9 35909026 35909619 -88166553 - ORR1D1-int LTR MaLR -13 1357 749 4 858 261 281 28 34 chr9 35909683 35909712 -88166460 + RMER17A2 LTR ERVK 251 279 -627 4 858 734 97 0 9 chr9 35909712 35909826 -88166346 + (TTCC)n Simple_repeat Simple_repeat 1 113 0 4 858 261 281 28 34 chr9 35909826 35909973 -88166199 + RMER17A2 LTR ERVK 280 426 -480 4 858 533 244 9 2 chr9 35909985 35910123 -88166049 - Lx4B LINE L1 -113 6945 6788 4 858 227 322 125 37 chr9 35911450 35911666 -88164506 - ORR1E LTR MaLR -35 324 90 4 858 22 56 0 0 chr9 35911815 35911851 -88164321 + AT_rich Low_complexity Low_complexity 1 36 0 4 858 414 0 0 0 chr9 35912278 35912324 -88163848 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 107 12264 135 18 2 chr9 35912976 35915684 -88160488 - Lx LINE L1 -4 6650 3843 4 859 40 67 0 0 chr9 35915755 35915830 -88160342 + AT_rich Low_complexity Low_complexity 1 75 0 4 859 869 274 138 44 chr9 35916277 35916617 -88159555 - MTE2a LTR MaLR -7 372 1 4 859 3718 95 6 15 chr9 35916708 35917240 -88158932 - L1_Mus1 LINE L1 0 6567 6041 4 859 232 91 45 0 chr9 35917409 35917453 -88158719 + (TATG)n Simple_repeat Simple_repeat 2 47 0 4 859 1757 268 59 113 chr9 35917508 35917928 -88158244 - RMER1C Other Other -1 1341 895 4 859 1069 88 0 13 chr9 35917928 35918078 -88158094 + B1_Mus1 SINE Alu 1 148 0 4 859 1757 283 55 99 chr9 35918078 35918776 -88157396 - RMER1C Other Other -448 894 376 4 859 30 0 0 0 chr9 35919082 35919112 -88157060 + AT_rich Low_complexity Low_complexity 1 30 0 4 859 25 31 0 0 chr9 35919562 35919594 -88156578 + AT_rich Low_complexity Low_complexity 1 32 0 4 859 24 0 0 0 chr9 35919622 35919646 -88156526 + AT_rich Low_complexity Low_complexity 1 24 0 4 859 3886 81 13 22 chr9 35920016 35920068 -88156104 + L1Md_F2 LINE L1 6031 6082 -500 4 859 3112 39 0 0 chr9 35920068 35920425 -88155747 + IAPEY2_LTR LTR ERVK 1 357 0 4 859 3886 81 13 22 chr9 35920425 35920925 -88155247 + L1Md_F2 LINE L1 6083 6578 -4 4 859 1106 277 25 42 chr9 35922015 35922337 -88153835 + ORR1D1 LTR MaLR 6 307 -67 4 859 853 54 9 0 chr9 35922344 35922456 -88153716 - B1_Mus1 SINE Alu 0 148 36 4 859 640 230 14 22 chr9 35924136 35924274 -88151898 + B1_Mur3 SINE Alu 4 140 -9 4 859 450 49 0 0 chr9 35924308 35924369 -88151803 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 859 417 276 0 0 chr9 35924369 35924456 -88151716 - B1_Mur1 SINE Alu -13 136 50 4 859 252 271 69 74 chr9 35924523 35924754 -88151418 + L1M3 LINE L1 3929 4158 -1982 4 859 857 322 32 18 chr9 35925192 35925745 -88150427 + L1MA6 LINE L1 5321 5881 -419 4 859 246 32 0 0 chr9 35925778 35925809 -88150363 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 859 387 346 10 0 chr9 35926137 35926241 -88149931 + ID_B1 SINE B4 14 118 -106 4 859 570 29 0 0 chr9 35926889 35926957 -88149215 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 859 213 39 0 0 chr9 35928963 35928989 -88147183 + (ATG)n Simple_repeat Simple_repeat 2 27 0 4 859 596 326 51 9 chr9 35928995 35929345 -88146827 + L1M2 LINE L1 4761 5125 -1018 4 859 21 0 0 0 chr9 35929956 35929977 -88146195 + AT_rich Low_complexity Low_complexity 1 21 0 4 859 541 316 54 45 chr9 35930117 35930800 -88145372 + Lx8 LINE L1 5106 5795 -1849 4 859 2527 36 2 261 chr9 35930830 35931356 -88144816 - RLTR10 LTR ERVK 0 390 1 4 859 10690 104 46 38 chr9 35931356 35933287 -88142885 - RLTR10-int LTR ERVK -1 1986 41 4 859 2527 36 2 261 chr9 35933297 35933823 -88142349 - RLTR10 LTR ERVK 0 390 1 4 859 3043 294 59 39 chr9 35933827 35935170 -88141002 + Lx8 LINE L1 5838 7207 -266 4 859 246 318 11 11 chr9 35935224 35935313 -88140859 + RMER15 LTR ERVL 376 464 -111 4 859 581 268 64 16 chr9 35935452 35935577 -88140595 + RSINE1 SINE B4 9 139 -26 4 859 477 0 0 0 chr9 35935577 35935630 -88140542 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 859 28 29 0 0 chr9 35935631 35935666 -88140506 + AT_rich Low_complexity Low_complexity 1 35 0 4 859 226 357 26 9 chr9 35935736 35935849 -88140323 - MamRep1879 DNA hAT? -59 157 43 4 859 992 55 0 20 chr9 35937733 35937881 -88138291 - L1Md_F2 LINE L1 0 6582 6438 4 859 749 11 0 0 chr9 35938388 35938475 -88137697 - L1Md_F3 LINE L1 -217 6367 6281 4 859 1574 34 34 0 chr9 35938475 35938679 -88137493 + L1Md_F3 LINE L1 6372 6582 -2 4 859 432 0 0 0 chr9 35939117 35939165 -88137007 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 859 317 258 61 10 chr9 35940158 35940256 -88135916 + MLT1A0 LTR MaLR 209 311 -54 4 859 717 192 15 0 chr9 35940281 35940411 -88135761 - B1_Mur3 SINE Alu 0 149 18 4 859 336 307 148 13 chr9 35940412 35940567 -88135605 - L1MC3 LINE L1 -171 7614 7439 4 859 289 191 30 21 chr9 35941571 35941699 -88134473 + Lx2A LINE L1 6871 7007 -1 4 859 667 295 26 88 chr9 35942519 35942746 -88133426 + B3A SINE B2 2 214 -2 4 859 1971 241 0 0 chr9 35944518 35944937 -88131235 - MTC LTR MaLR -2 419 1 4 859 205 190 0 23 chr9 35945080 35945123 -88131049 + (CAA)n Simple_repeat Simple_repeat 3 44 0 4 859 569 258 68 19 chr9 35945217 35945379 -88130793 - MTD LTR MaLR -183 236 67 4 859 980 118 0 7 chr9 35945384 35945529 -88130643 - B1_Mus1 SINE Alu -2 146 3 4 859 685 276 290 49 chr9 35945973 35946385 -88129787 + Lx8 LINE L1 6723 7233 -240 4 859 270 358 12 0 chr9 35946666 35946747 -88129425 + ID4_ SINE ID 2 83 0 4 859 254 177 12 48 chr9 35946935 35947018 -88129154 + T-rich Low_complexity Low_complexity 2 81 0 4 859 436 177 0 25 chr9 35947027 35947108 -88129064 - ID4 SINE ID -2 81 3 4 859 1332 193 20 4 chr9 35947119 35947374 -88128798 - Lx4A LINE L1 0 7058 6800 4 859 2434 122 12 0 chr9 35947374 35947774 -88128398 - L1_Mur2 LINE L1 -1743 4134 3730 4 859 743 184 7 7 chr9 35947795 35947948 -88128224 - Lx7 LINE L1 0 7696 7544 4 859 576 171 0 0 chr9 35947951 35948062 -88128110 + (TA)n Simple_repeat Simple_repeat 2 112 0 4 859 528 100 0 0 chr9 35948062 35948142 -88128030 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 859 502 241 0 78 chr9 35948145 35948325 -88127847 - Lx7 LINE L1 -187 7509 7344 4 859 225 132 0 0 chr9 35948373 35948411 -88127761 + (CCA)n Simple_repeat Simple_repeat 1 38 0 4 859 425 248 0 0 chr9 35948422 35948527 -88127645 - Lx7 LINE L1 -364 7332 7228 4 859 491 324 0 21 chr9 35949502 35949647 -88126525 + ID_B1 SINE B4 73 214 -10 4 859 225 94 0 0 chr9 35949652 35949684 -88126488 + (TAAG)n Simple_repeat Simple_repeat 4 35 0 4 859 21384 77 12 10 chr9 35950003 35953916 -88122256 - L1Md_F LINE L1 -1661 4222 301 4 859 2817 52 13 27 chr9 35953966 35954342 -88121830 + L1Md_F3 LINE L1 6214 6584 0 4 859 228 170 0 0 chr9 35954470 35954523 -88121649 + CT-rich Low_complexity Low_complexity 1 53 0 4 859 324 353 25 16 chr9 35954686 35954807 -88121365 + RSINE1 SINE B4 6 127 -38 4 859 833 124 6 0 chr9 35955917 35956078 -88120094 + (CA)n Simple_repeat Simple_repeat 2 163 0 4 859 318 259 8 85 chr9 35956269 35956387 -88119785 - RMER5 LTR ERV1 -425 109 1 4 859 3244 207 75 15 chr9 35957076 35958103 -88118069 - Lx2 LINE L1 -307 6751 5605 4 859 468 0 0 0 chr9 35958103 35958155 -88118017 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 859 1806 167 112 5 chr9 35958155 35958264 -88117908 - Lx2 LINE L1 -282 5604 5481 4 859 1079 184 117 80 chr9 35958284 35958609 -88117563 + RLTR9C LTR ERVK 57 393 0 4 859 4178 110 18 118 chr9 35958613 35959520 -88116652 + MMETn-int LTR ERVK 3 818 -4026 4 859 15686 34 16 0 chr9 35959521 35961566 -88114606 - L1Md_F2 LINE L1 -651 5931 3862 4 859 1395 64 0 60 chr9 35961720 35961937 -88114235 + MMETn-int LTR ERVK 2938 3141 -1703 4 859 6123 130 20 2 chr9 35962042 35962967 -88113205 + ETnERV2-int LTR ERVK 6226 7167 -239 4 859 589 190 99 41 chr9 35962967 35963141 -88113031 + RLTR13B1 LTR ERVK 127 301 -601 4 859 479 221 90 18 chr9 35963147 35963313 -88112859 + ETnERV-int LTR ERVK 3136 3313 -1 4 859 1001 208 90 134 chr9 35963313 35963724 -88112448 + RLTR9C LTR ERVK 1 393 0 4 859 1185 186 0 4 chr9 35963724 35963956 -88112216 - L1_Mm LINE L1 -400 5483 5253 4 859 4964 125 5 4 chr9 35963954 35964756 -88111416 + L1VL4 LINE L1 169 971 -5331 4 859 1659 157 86 3 chr9 35964756 35965057 -88111115 + IAPEY3_LTR LTR ERVK 1 326 -6 4 859 48646 104 14 7 chr9 35965063 35972615 -88103557 + IAPEY3-int LTR ERVK 3 7572 -9 4 859 1777 131 88 3 chr9 35972645 35972951 -88103221 + IAPEY3_LTR LTR ERVK 1 332 0 4 859 579 86 0 0 chr9 35972951 35973044 -88103128 + MusHAL1 LINE L1 121 213 -2499 4 859 1612 298 69 60 chr9 35973036 35973788 -88102384 - RMER1C Other Other -214 1128 370 4 859 562 302 17 8 chr9 35973796 35973999 -88102173 - RMER1C Other Other -733 609 227 4 859 1486 241 156 2 chr9 35974485 35974954 -88101218 - Lx9 LINE L1 -1 7643 7103 4 859 520 162 30 0 chr9 35974966 35975065 -88101107 - RLTR11A LTR ERVK -9 519 418 4 859 304 327 10 0 chr9 35975184 35975285 -88100887 + GA-rich Low_complexity Low_complexity 2 103 0 4 859 21 36 0 0 chr9 35975474 35975502 -88100670 + AT_rich Low_complexity Low_complexity 1 28 0 4 859 23 33 0 0 chr9 35975557 35975587 -88100585 + AT_rich Low_complexity Low_complexity 1 30 0 4 859 7404 71 0 0 chr9 35975807 35976924 -88099248 - L1_Mus1 LINE L1 -1 6566 5450 4 859 34 42 0 0 chr9 35977118 35977166 -88099006 + AT_rich Low_complexity Low_complexity 1 48 0 4 859 4590 107 3 6 chr9 35977460 35978166 -88098006 - L1_Mus3 LINE L1 0 6638 5983 4 859 10008 196 28 83 chr9 35978170 35978997 -88097175 - L1_Mur1 LINE L1 -127 5759 4933 4 859 822 134 0 20 chr9 35978997 35979149 -88097023 + RMER17B LTR ERVK 315 463 -495 4 859 10008 196 28 83 chr9 35979149 35980928 -88095244 - L1_Mur1 LINE L1 -127 4932 3152 4 859 216 130 0 0 chr9 35981354 35981400 -88094772 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 4 859 876 312 42 37 chr9 35981491 35981844 -88094328 - Lx8 LINE L1 -26 7447 7093 4 859 308 357 71 8 chr9 35981856 35981983 -88094189 + B3A SINE B2 64 198 0 4 859 1285 289 25 18 chr9 35982030 35982470 -88093702 - Lx8 LINE L1 -699 6774 6332 4 859 23 54 0 0 chr9 35982504 35982541 -88093631 + AT_rich Low_complexity Low_complexity 1 37 0 4 859 21 36 0 0 chr9 35983289 35983317 -88092855 + AT_rich Low_complexity Low_complexity 1 28 0 4 859 918 66 0 0 chr9 35983430 35983545 -88092627 + B1_Mus1 SINE Alu 27 141 -7 4 859 201 39 0 0 chr9 35983545 35983571 -88092601 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 859 315 0 0 0 chr9 35985311 35985346 -88090826 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 859 609 263 7 0 chr9 35985553 35985690 -88090482 + B1_Mur1 SINE Alu 5 142 -7 4 859 334 53 35 0 chr9 35986553 35986610 -88089562 + (TTTTTG)n Simple_repeat Simple_repeat 3 61 0 5 859 676 338 29 25 chr9 35986610 35986886 -88089286 - MLT1B LTR MaLR -64 326 50 5 859 4096 55 14 4 chr9 35987083 35987599 -88088573 + L1Md_F2 LINE L1 6048 6568 -14 5 859 238 222 0 53 chr9 35988584 35988641 -88087531 - MTEb LTR MaLR -8 371 318 5 859 3577 156 35 37 chr9 35988649 35989402 -88086770 - RMER17A LTR ERVK 0 751 1 5 859 2447 50 13 63 chr9 35989403 35989440 -88086732 - RMER17A-int LTR ERVK 0 1728 1694 5 859 2893 95 13 0 chr9 35989440 35989831 -88086341 + MTA_Mm LTR MaLR 1 396 0 5 859 2447 50 13 63 chr9 35989831 35990174 -88085998 - RMER17A-int LTR ERVK -35 1693 1368 5 859 2513 64 3 0 chr9 35990174 35990516 -88085656 + RMER17A-int LTR ERVK 891 1233 -495 5 859 318 250 219 0 chr9 35990654 35990750 -88085422 - MTE2b LTR MaLR -262 117 1 5 859 28905 76 70 3 chr9 35991880 35995082 -88081090 - L1Md_F2 LINE L1 -16 6566 2999 5 859 207 0 0 0 chr9 35995082 35995105 -88081067 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 859 28905 101 55 3 chr9 35995105 35997731 -88078441 - L1Md_F2 LINE L1 -2885 2998 411 5 859 2225 284 43 15 chr9 35998965 36000000 -88076172 - Lx7 LINE L1 -1133 6563 5495 5 859 1530 242 68 23 chr9 36000003 36000515 -88075657 - L1_Mm LINE L1 -391 5489 4955 1 859 2100 218 65 26 chr9 36000518 36001026 -88075146 - RLTR12B LTR ERVK 0 528 1 2 859 3715 174 35 11 chr9 36001032 36001366 -88074806 - L1_Mm LINE L1 -80 5803 5674 1 859 6042 112 10 51 chr9 36001366 36002386 -88073786 + RLTR13A3 LTR ERVK 1 978 0 3 859 3715 64 4 14 chr9 36002386 36002741 -88073431 - L1_Mm LINE L1 -210 5673 5317 1 859 4105 252 77 30 chr9 36002959 36004439 -88071733 - L1_Mur3 LINE L1 -1148 4732 3183 4 859 367 79 0 0 chr9 36004439 36004502 -88071670 + L1_Mus3 LINE L1 6574 6636 -2 5 859 652 167 13 65 chr9 36004508 36004662 -88071510 - L1_Mur3 LINE L1 -2984 2896 2751 4 859 459 52 0 0 chr9 36004666 36004724 -88071448 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 859 270 279 29 0 chr9 36005157 36005225 -88070947 - MTD-int LTR MaLR -1028 70 1 7 859 1487 217 114 24 chr9 36005229 36005606 -88070566 - MTD LTR MaLR -2 417 7 7 859 1189 292 51 23 chr9 36005785 36006139 -88070033 - MTEb LTR MaLR -14 365 2 8 859 993 271 40 30 chr9 36006223 36006599 -88069573 - BGLII_B LTR ERVK -18 404 3 9 859 250 312 39 0 chr9 36006618 36006695 -88069477 + Lx8 LINE L1 7246 7325 -148 1 859 28 29 0 0 chr9 36006697 36006732 -88069440 + AT_rich Low_complexity Low_complexity 1 35 0 1 859 1258 305 28 25 chr9 36007022 36007416 -88068756 + MTD LTR MaLR 23 417 -2 1 859 734 232 43 24 chr9 36007418 36007626 -88068546 + MTD-int LTR MaLR 1 212 -1046 1 859 337 300 162 20 chr9 36007856 36008060 -88068112 - L1M4 LINE L1 -3669 2477 2245 1 859 538 274 78 88 chr9 36008119 36008533 -88067639 - RMER2 LTR ERV1 -56 511 1 1 859 1399 246 36 8 chr9 36008590 36008954 -88067218 - ORR1D1 LTR MaLR 0 374 1 1 859 743 186 50 0 chr9 36008959 36009099 -88067073 - ORR1D1-int LTR MaLR -13 1357 1211 1 859 6654 133 45 7 chr9 36009115 36009781 -88066391 - Lx4A LINE L1 -1131 5927 5235 1 859 2575 38 9 0 chr9 36009781 36010098 -88066074 - L1Md_F3 LINE L1 -14 6570 6251 1 859 6654 156 29 4 chr9 36010098 36010672 -88065500 - Lx4A LINE L1 -643 5234 4656 1 859 967 121 6 34 chr9 36010672 36010851 -88065321 - L1Md_F2 LINE L1 -1 6581 6408 1 859 1088 145 174 0 chr9 36010842 36011084 -88065088 - Lx4A LINE L1 -1208 4669 4386 1 859 1653 271 44 36 chr9 36011084 36011586 -88064586 - RMER19C LTR ERVK 0 611 106 1 859 4719 142 34 4 chr9 36011605 36012424 -88063748 - Lx4A LINE L1 -1489 4388 3545 1 859 24 67 0 0 chr9 36012476 36012521 -88063651 + AT_rich Low_complexity Low_complexity 1 45 0 2 859 2883 221 40 16 chr9 36012555 36013561 -88062611 - Lx4A LINE L1 -4336 1544 507 1 859 846 361 63 28 chr9 36013764 36014302 -88061870 - Lx8 LINE L1 -73 7400 6844 2 859 1611 141 276 0 chr9 36014301 36014620 -88061552 - Lx3_Mus LINE L1 -373 6636 6230 2 859 2222 128 51 15 chr9 36014620 36015009 -88061163 + Lx3_Mus LINE L1 6607 7009 0 2 859 635 303 23 0 chr9 36015030 36015248 -88060924 - Lx8 LINE L1 -616 6857 6635 2 859 732 115 0 0 chr9 36015690 36015803 -88060369 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 2 859 282 280 108 0 chr9 36015803 36015896 -88060276 - Lx4B LINE L1 -29 7029 6927 2 859 1364 200 8 39 chr9 36016111 36016446 -88059726 - Lx4B LINE L1 -116 6934 6618 2 859 252 335 98 30 chr9 36017872 36018075 -88058097 - ORR1D1 LTR MaLR -57 302 86 1 859 247 404 6 64 chr9 36018712 36018884 -88057288 - RSINE1 SINE B4 -1 164 3 2 859 3293 170 15 5 chr9 36019412 36020003 -88056169 - Lx LINE L1 -12 6642 6046 2 859 5642 173 24 5 chr9 36020006 36021409 -88054763 - Lx2 LINE L1 -810 6187 4756 2 859 2287 162 17 27 chr9 36021420 36021826 -88054346 - RLTR9D LTR ERVK -1 402 1 2 859 403 125 27 14 chr9 36021827 36021900 -88054272 - ETnERV2-int LTR ERVK -2 7404 7331 2 859 440 198 10 0 chr9 36022112 36022208 -88053964 - ETnERV2-int LTR ERVK -981 6425 6329 2 859 1746 131 3 28 chr9 36022214 36022505 -88053667 + RLTR9D LTR ERVK 101 384 -19 2 859 34 65 0 0 chr9 36022540 36022602 -88053570 + AT_rich Low_complexity Low_complexity 1 62 0 3 859 1034 102 0 20 chr9 36022608 36022758 -88053414 + B1_Mm SINE Alu 1 147 0 3 859 360 97 0 0 chr9 36022761 36022823 -88053349 + (CAAAAA)n Simple_repeat Simple_repeat 2 63 0 3 859 280 237 53 0 chr9 36022965 36023041 -88053131 - Lx9 LINE L1 -204 7440 7361 3 859 1326 206 4 4 chr9 36023203 36023457 -88052715 - Lx4A LINE L1 -2 7056 6803 3 859 2757 107 10 2 chr9 36023457 36023862 -88052310 - Lx2 LINE L1 -1739 4138 3731 2 859 1520 204 11 57 chr9 36023882 36024252 -88051920 - Lx7 LINE L1 0 7696 7344 3 859 451 233 98 23 chr9 36024318 36024450 -88051722 - Lx7 LINE L1 -366 7330 7189 3 859 234 277 44 78 chr9 36024515 36024605 -88051567 + MTEa LTR MaLR 6 92 -287 3 859 7157 98 7 4 chr9 36025333 36026709 -88049463 - L1_Mus1 LINE L1 -1 6566 5187 3 859 407 176 0 0 chr9 36026709 36026783 -88049389 + L1Md_F LINE L1 459 532 -5987 3 859 32656 102 10 2 chr9 36026780 36033191 -88042981 + L1Md_F2 LINE L1 103 6567 -15 3 859 11679 134 4 3 chr9 36033186 36035087 -88041085 - L1_Mus1 LINE L1 -683 5200 3298 3 859 306 87 0 0 chr9 36035290 36035336 -88040836 + (TAAG)n Simple_repeat Simple_repeat 2 47 0 4 859 1583 101 4 4 chr9 36035390 36035619 -88040553 + L1Md_F2 LINE L1 6233 6461 -121 4 859 311 254 25 83 chr9 36035699 36035819 -88040353 + L1MEg LINE L1 1060 1172 -4912 4 859 213 39 0 0 chr9 36036017 36036043 -88040129 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 859 291 365 41 33 chr9 36036176 36036298 -88039874 + RSINE1 SINE B4 8 130 -35 4 859 440 167 0 0 chr9 36036772 36036838 -88039334 + polypurine Low_complexity Low_complexity 4 69 0 4 859 382 191 16 0 chr9 36037648 36037774 -88038398 + (CA)n Simple_repeat Simple_repeat 1 128 0 4 859 4765 204 57 43 chr9 36038404 36038423 -88037749 + RLTR21 LTR ERVK 101 121 -1451 4 859 605 25 0 0 chr9 36038423 36038503 -88037669 + L1Md_A LINE L1 6503 6582 0 4 859 4765 204 57 43 chr9 36038503 36039672 -88036500 + RLTR21 LTR ERVK 122 1306 -266 4 859 338 0 24 0 chr9 36039672 36039714 -88036458 + (TATG)n Simple_repeat Simple_repeat 3 45 0 4 859 246 335 30 10 chr9 36040200 36040239 -88035933 - L1_Mur2 LINE L1 -813 5330 5291 5 859 4847 224 7 14 chr9 36040239 36041302 -88034870 - Lx2 LINE L1 -6 6991 5937 5 859 911 215 1 0 chr9 36041302 36041490 -88034682 - L1_Mur2 LINE L1 -853 5290 5067 5 859 344 254 85 50 chr9 36041689 36041830 -88034342 + RLTR43A LTR ERVK 219 364 0 5 859 2893 178 7 5 chr9 36041830 36042402 -88033770 - L1_Mur2 LINE L1 -803 5074 4502 5 859 401 204 10 0 chr9 36042403 36042506 -88033666 - L1_Mur2 LINE L1 -1862 4015 3912 5 859 1905 151 3 12 chr9 36042507 36042843 -88033329 - L1VL4 LINE L1 -1144 2415 2083 5 107 35133 37 1 1 chr9 36042844 36048494 -88027678 + L1Md_T LINE L1 2 5589 -297 5 860 8990 5 0 0 chr9 36048494 36049490 -88026682 + L1Md_T LINE L1 5590 6585 0 5 860 6810 138 18 26 chr9 36049509 36051211 -88024961 - L1VL4 LINE L1 -1465 2094 408 5 860 1220 182 8 34 chr9 36051219 36051486 -88024686 - Lx2 LINE L1 0 6997 6738 5 860 2433 144 2 2 chr9 36051560 36051957 -88024215 - Lx3A LINE L1 -2 6979 6583 5 860 671 270 79 22 chr9 36053215 36053393 -88022779 + B3 SINE B2 5 192 -24 5 860 351 0 0 0 chr9 36053878 36053917 -88022255 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 860 3814 157 9 5 chr9 36053960 36054612 -88021560 - L1_Mus3 LINE L1 -4 6634 5980 5 860 551 256 51 0 chr9 36054650 36054787 -88021385 - RLTR11A LTR ERVK 0 528 385 6 860 6109 89 49 12 chr9 36055540 36056433 -88019739 - L1_Mus2 LINE L1 0 6654 5645 6 860 583 116 0 0 chr9 36056435 36056521 -88019651 + L1VL1 LINE L1 482 567 -5855 6 860 26060 103 12 104 chr9 36056688 36058451 -88017721 + Lx3_Mus LINE L1 1213 3012 -2874 6 860 536 0 16 0 chr9 36058451 36058515 -88017657 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 860 26060 103 12 104 chr9 36058515 36059023 -88017149 + Lx3_Mus LINE L1 3013 3023 -2863 6 860 579 6 124 6 chr9 36059023 36059184 -88016988 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 860 2182 87 16 0 chr9 36059190 36059501 -88016671 - L1_Mus3 LINE L1 -11 6627 6312 6 860 26060 109 12 84 chr9 36059501 36063511 -88012661 + Lx3_Mus LINE L1 3024 7008 -1 6 860 26 30 0 0 chr9 36063512 36063545 -88012627 + AT_rich Low_complexity Low_complexity 1 33 0 6 860 405 0 0 0 chr9 36063603 36063648 -88012524 + (TTA)n Simple_repeat Simple_repeat 3 47 0 6 860 279 68 51 0 chr9 36064583 36064642 -88011530 + (TTTTTG)n Simple_repeat Simple_repeat 4 65 0 6 860 1380 177 119 0 chr9 36066143 36066437 -88009735 - ORR1A4 LTR MaLR 0 329 1 7 860 441 0 0 0 chr9 36066966 36067015 -88009157 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 860 503 286 9 0 chr9 36067284 36067396 -88008776 + B1F2 SINE Alu 31 143 -6 7 860 660 288 103 47 chr9 36068219 36068540 -88007632 - MLT1B LTR MaLR -2 388 50 7 860 799 264 164 16 chr9 36069674 36069997 -88006175 - MTEb LTR MaLR -8 371 1 7 860 414 242 53 0 chr9 36071130 36071225 -88004947 + RSINE1 SINE B4 15 114 -51 7 860 2651 184 11 0 chr9 36071704 36072178 -88003994 + Lx4A LINE L1 6570 7048 -10 7 860 2516 110 50 3 chr9 36072563 36072945 -88003227 + MTB LTR MaLR 1 400 0 7 860 834 206 58 0 chr9 36072945 36073134 -88003038 - Lx5 LINE L1 -746 6304 6105 7 860 22 0 0 0 chr9 36073201 36073223 -88002949 + AT_rich Low_complexity Low_complexity 1 22 0 7 860 462 226 42 25 chr9 36073852 36073970 -88002202 + ORR1D2 LTR MaLR 248 367 -3 8 860 2723 201 123 0 chr9 36073978 36074579 -88001593 - RLTR33 LTR ERVK -3 675 1 8 860 615 194 65 29 chr9 36074927 36075065 -88001107 + RMER6B LTR ERVK 319 461 0 8 860 296 296 68 25 chr9 36075431 36075549 -88000623 + MMERGLN-int LTR ERV1 2101 2223 -5378 8 860 2576 84 3 0 chr9 36075576 36075921 -88000251 - ORR1A1 LTR MaLR 0 346 1 8 860 456 311 0 0 chr9 36076217 36076352 -87999820 + MMERGLN-int LTR ERV1 2990 3124 -4432 8 860 626 246 7 0 chr9 36076395 36076533 -87999639 + RLTR19-int LTR ERVK 4247 4385 -1752 8 860 368 138 15 0 chr9 36076521 36076586 -87999586 + RLTR19-int LTR ERVK 6071 6136 -1 8 860 1100 222 193 46 chr9 36076587 36076703 -87999469 + RLTR19 LTR ERVK 1 159 -340 8 860 816 107 0 0 chr9 36076703 36076824 -87999348 + (GGA)n Simple_repeat Simple_repeat 3 123 0 8 860 1100 222 193 46 chr9 36076824 36077142 -87999030 + RLTR19 LTR ERVK 160 498 -1 8 860 971 276 85 20 chr9 36077229 36077283 -87998889 + L1MCa LINE L1 1426 1479 -5029 8 860 1665 222 99 0 chr9 36077283 36077666 -87998506 + MTC LTR MaLR 1 421 0 8 860 971 276 85 20 chr9 36077666 36078258 -87997914 + L1MCa LINE L1 1480 2114 -4394 8 860 2546 209 72 54 chr9 36078259 36079133 -87997039 - Lx9 LINE L1 -1 7643 6754 8 860 273 259 208 16 chr9 36079134 36079389 -87996783 + L1MCa LINE L1 2109 2412 -4096 8 860 267 288 130 0 chr9 36079514 36079698 -87996474 + L1MCa LINE L1 2434 2641 -3680 8 860 613 254 106 6 chr9 36079731 36080091 -87996081 + L1MCa LINE L1 2864 3259 -3062 8 860 878 296 64 18 chr9 36080071 36080525 -87995647 + L1MCa LINE L1 5463 5937 -571 8 860 892 248 96 13 chr9 36080550 36080779 -87995393 + MTE2b LTR MaLR 128 375 -4 9 860 2178 70 142 6 chr9 36080836 36081181 -87994991 - Lx3A LINE L1 -932 6049 5658 9 860 5334 138 39 3 chr9 36081194 36082078 -87994094 + Lx3A LINE L1 6064 6978 -3 9 860 24 0 0 0 chr9 36082079 36082103 -87994069 + AT_rich Low_complexity Low_complexity 1 24 0 9 860 571 288 53 14 chr9 36082163 36082371 -87993801 - B3 SINE B2 0 216 1 9 860 460 266 19 3 chr9 36082445 36082614 -87993558 - L1_Mur3 LINE L1 -1820 4323 4134 9 860 1801 159 83 15 chr9 36082614 36083009 -87993163 + BGLII_Mus LTR ERVK 1 422 0 9 860 341 298 16 37 chr9 36083009 36083027 -87993145 - L1_Mur3 LINE L1 -1990 4153 4140 9 860 679 168 0 23 chr9 36083924 36084052 -87992120 - RLTR15 LTR ERVK 0 359 235 9 860 1009 201 5 18 chr9 36084068 36084291 -87991881 - Lx2 LINE L1 -6 6991 6772 9 860 3368 150 10 0 chr9 36084292 36084884 -87991288 - Lx2 LINE L1 -516 6481 5884 9 860 1347 181 64 4 chr9 36084884 36085150 -87991022 - RLTR15 LTR ERVK -72 287 6 9 860 3223 214 43 12 chr9 36085235 36085902 -87990270 - RLTR17 LTR ERVK 0 692 5 9 860 1479 171 0 3 chr9 36085917 36086199 -87989973 + L1_Mm LINE L1 4661 4941 -942 1 860 2980 131 2 2 chr9 36086199 36086636 -87989536 + RLTR9B LTR ERVK 1 437 0 1 860 396 270 65 47 chr9 36086676 36086952 -87989220 + ETnERV2-int LTR ERVK 43 323 -2991 1 860 425 62 0 15 chr9 36086952 36087018 -87989154 + (TAAAA)n Simple_repeat Simple_repeat 2 66 0 1 860 825 87 0 0 chr9 36087019 36087134 -87989038 + (GA)n Simple_repeat Simple_repeat 2 116 0 1 860 8328 150 96 50 chr9 36087134 36087909 -87988263 + ETnERV2-int LTR ERVK 1075 1916 -5490 1 860 1555 110 0 25 chr9 36087909 36088152 -87988020 + L1Md_F2 LINE L1 6334 6570 -12 1 860 8328 150 96 50 chr9 36088152 36088294 -87987878 + ETnERV2-int LTR ERVK 1917 2042 -5364 1 860 206 62 0 30 chr9 36088294 36088327 -87987845 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 860 8328 150 96 50 chr9 36088327 36088878 -87987294 + ETnERV2-int LTR ERVK 2043 2614 -4792 1 860 243 0 0 0 chr9 36088878 36088905 -87987267 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 860 8328 150 96 50 chr9 36088905 36089434 -87986738 + ETnERV2-int LTR ERVK 2615 3164 -4242 1 860 6877 55 1 1 chr9 36089440 36090339 -87985833 - L1Md_F2 LINE L1 0 6582 5684 1 860 965 99 0 0 chr9 36090339 36090470 -87985702 - B2_Mm2 SINE B2 -63 132 2 1 860 462 215 26 70 chr9 36090530 36090645 -87985527 + B1F2 SINE Alu 40 149 0 1 860 253 244 39 0 chr9 36090878 36090956 -87985216 + L1M1 LINE L1 5695 5775 -522 1 860 2338 131 75 3 chr9 36090972 36091356 -87984816 + MTC LTR MaLR 1 412 -9 1 860 265 195 91 68 chr9 36091364 36091397 -87984775 + L1M1 LINE L1 5787 5822 -478 1 860 362 176 35 0 chr9 36091397 36091482 -87984690 + L1Md_F2 LINE L1 6493 6580 -2 1 860 265 195 91 68 chr9 36091482 36091536 -87984636 + L1M1 LINE L1 5823 5876 -424 1 860 854 151 13 13 chr9 36091549 36091703 -87984469 - B2_Mm2 SINE B2 -40 155 2 1 860 591 292 70 0 chr9 36091794 36091965 -87984207 + B3A SINE B2 1 183 -15 1 860 23 33 0 0 chr9 36092085 36092115 -87984057 + AT_rich Low_complexity Low_complexity 1 30 0 1 860 1095 67 0 0 chr9 36092232 36092366 -87983806 + B1_Mus2 SINE Alu 1 134 -13 1 860 215 31 0 30 chr9 36092366 36092399 -87983773 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 860 614 211 131 15 chr9 36092415 36092545 -87983627 - RSINE1 SINE B4 -18 147 3 1 860 953 172 194 0 chr9 36092617 36092797 -87983375 + B3 SINE B2 2 216 0 1 860 292 341 82 76 chr9 36092900 36093084 -87983088 - ORR1E LTR MaLR -172 187 3 1 860 356 295 21 21 chr9 36093392 36093489 -87982683 + RSINE1 SINE B4 69 165 0 1 860 1053 70 35 7 chr9 36093644 36093787 -87982385 - B1_Mus2 SINE Alu 0 147 1 1 860 583 237 53 0 chr9 36093940 36094071 -87982101 - B1_Mus1 SINE Alu -9 139 2 1 860 626 293 85 0 chr9 36094709 36094873 -87981299 - B3A SINE B2 -14 184 7 1 860 525 242 90 8 chr9 36094884 36095017 -87981155 - B1_Mur1 SINE Alu 0 149 6 1 860 501 269 37 30 chr9 36095144 36095278 -87980894 - B1F2 SINE Alu -14 135 1 1 860 12413 60 3 2 chr9 36095348 36097713 -87978459 - L1Md_F2 LINE L1 0 6582 4218 1 860 252 257 67 84 chr9 36097716 36097835 -87978337 + RNLTR23 LTR ERVK 526 642 0 1 860 1053 278 13 3 chr9 36098044 36098347 -87977825 + RNERVK23-int LTR ERVK 192 497 -7720 1 860 5669 267 6 11 chr9 36099357 36100934 -87975238 + RNERVK23-int LTR ERVK 4445 6013 -2204 1 860 385 237 21 0 chr9 36100929 36101026 -87975146 + RNERVK23-int LTR ERVK 7480 7578 -639 1 860 1134 72 0 0 chr9 36101027 36101180 -87974992 + (GA)n Simple_repeat Simple_repeat 1 153 0 1 860 291 254 141 90 chr9 36101297 36101453 -87974719 + RNLTR23 LTR ERVK 479 642 0 1 860 1702 160 3 0 chr9 36101453 36101766 -87974406 - L1_Mur2 LINE L1 -1804 4073 3760 1 860 5078 147 1 9 chr9 36101776 36102199 -87973973 - L1VL4 LINE L1 -2393 1166 753 1 860 1187 76 0 0 chr9 36102199 36102343 -87973829 - B1_Mm SINE Alu -3 144 1 1 860 5078 195 12 21 chr9 36102343 36103299 -87972873 - L1VL4 LINE L1 -5550 752 1 1 860 1150 190 4 8 chr9 36103302 36103551 -87972621 - L1_Mur2 LINE L1 -558 5319 5072 1 860 2191 23 114 0 chr9 36103551 36103813 -87972359 + RLTR10B LTR ERVK 1 292 0 1 860 303 203 31 0 chr9 36103815 36103879 -87972293 - tRNA-Phe-TTY tRNA tRNA 0 76 11 1 860 237 222 0 0 chr9 36103892 36103937 -87972235 + RLTR27 LTR ERVK 231 275 -34 1 860 321 43 106 0 chr9 36103937 36103984 -87972188 + MMERVK10C-int LTR ERVK 225 276 -7305 1 860 676 56 213 0 chr9 36103970 36104078 -87972094 + MMERVK10C-int LTR ERVK 5436 5566 -2015 1 860 727 54 0 0 chr9 36104078 36104170 -87972002 + MMERVK10C-int LTR ERVK 7442 7533 -147 1 860 859 60 0 0 chr9 36104162 36104279 -87971893 + MMERVK10C-int LTR ERVK 7465 7581 0 1 860 1976 24 177 0 chr9 36104279 36104527 -87971645 + RLTR10B LTR ERVK 1 292 0 1 860 5324 176 12 20 chr9 36104527 36105694 -87970478 - L1_Mur2 LINE L1 -798 5079 3922 1 860 2331 155 12 38 chr9 36105720 36106403 -87969769 - L1VL4 LINE L1 -2488 1071 413 1 860 303 294 0 11 chr9 36106371 36106464 -87969708 - L1VL4 LINE L1 -6004 298 207 1 860 1305 186 66 19 chr9 36106499 36106817 -87969355 - Lx2 LINE L1 -2 6995 6663 1 860 1106 237 51 36 chr9 36106830 36107191 -87968981 + MT2B LTR ERVL 91 601 0 1 860 347 275 66 0 chr9 36107198 36107289 -87968883 - RMER5 LTR ERV1 -397 137 41 1 860 1010 283 44 95 chr9 36107878 36108382 -87967790 + RLTR28B LTR ERVL 1 478 -3 1 860 353 183 0 12 chr9 36108898 36108947 -87967225 + polypyrimidine Low_complexity Low_complexity 38 85 0 1 860 1293 83 0 0 chr9 36108947 36109127 -87967045 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 860 353 183 0 12 chr9 36109127 36109160 -87967012 + polypyrimidine Low_complexity Low_complexity 5 37 0 1 860 2126 174 18 10 chr9 36109160 36109171 -87967001 - Lx3A LINE L1 0 6981 6972 1 860 636 50 0 0 chr9 36109171 36109251 -87966921 + (TTTC)n Simple_repeat Simple_repeat 3 82 0 1 860 2126 174 18 10 chr9 36109251 36109634 -87966538 - Lx3A LINE L1 -10 6971 6584 1 860 7186 133 21 12 chr9 36110832 36112015 -87964157 - Lx3_Mus LINE L1 0 7009 5816 1 860 3310 162 10 2 chr9 36112043 36112637 -87963535 + L1_Mm LINE L1 4862 5460 -423 1 860 3677 97 8 0 chr9 36112637 36113165 -87963007 - L1_Mm LINE L1 -1576 4307 3776 1 860 7250 130 49 25 chr9 36113159 36113617 -87962555 + L1_Mm LINE L1 4294 4733 -1150 1 860 261 0 0 0 chr9 36113617 36113646 -87962526 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 860 7250 130 49 25 chr9 36113646 36114453 -87961719 + L1_Mm LINE L1 4734 5588 -295 1 860 4781 99 7 33 chr9 36114471 36115193 -87960979 + L1_Mus2 LINE L1 5864 6566 0 1 860 234 128 0 0 chr9 36115455 36115494 -87960678 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 860 2732 107 69 0 chr9 36117065 36117484 -87958688 - L1_Mus2 LINE L1 0 6566 6119 1 860 7709 122 2 2 chr9 36117507 36118684 -87957488 + L1_Mm LINE L1 4389 5565 -318 1 860 497 256 168 0 chr9 36118680 36118883 -87957289 + Lx9 LINE L1 7407 7643 -1 1 860 2815 303 69 9 chr9 36119350 36120565 -87955607 + RMER1C Other Other 375 1339 -3 1 860 186 103 0 0 chr9 36120815 36120844 -87955328 + (A)n Simple_repeat Simple_repeat 1 29 0 1 860 394 195 67 58 chr9 36121506 36121626 -87954546 - L1M4 LINE L1 -5207 1335 1215 1 860 237 310 6 19 chr9 36121628 36121786 -87954386 + L1M4 LINE L1 3026 3181 -2965 1 860 1716 249 36 3 chr9 36121788 36122147 -87954025 + MTC LTR MaLR 1 371 -50 1 860 521 248 63 8 chr9 36122168 36122294 -87953878 + B3 SINE B2 7 139 -77 1 860 216 0 0 0 chr9 36122344 36122368 -87953804 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 860 4701 164 22 13 chr9 36122409 36122752 -87953420 - Lx2 LINE L1 -548 6449 6113 1 860 4227 216 28 15 chr9 36122752 36123698 -87952474 - RMER17B LTR ERVK 0 958 1 1 860 4701 180 17 8 chr9 36123698 36124809 -87951363 - Lx2 LINE L1 -885 6112 4985 1 860 34250 75 5 1 chr9 36124821 36130981 -87945191 - L1Md_F2 LINE L1 -15 6567 387 1 860 311 300 0 0 chr9 36130982 36131102 -87945070 - Lx2 LINE L1 -885 4992 4873 1 860 836 191 86 0 chr9 36131101 36131263 -87944909 - L1VL4 LINE L1 -5891 411 236 1 860 519 17 0 0 chr9 36131907 36131967 -87944205 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 860 897 322 52 43 chr9 36131973 36132395 -87943777 + Lx7 LINE L1 6875 7300 -396 1 860 248 148 16 0 chr9 36132740 36132801 -87943371 + GA-rich Low_complexity Low_complexity 2 63 0 1 860 332 315 119 4 chr9 36133322 36133558 -87942614 + L1MD1 LINE L1 5690 5952 -290 1 860 313 355 71 0 chr9 36133725 36133894 -87942278 + L1MC4a LINE L1 7679 7859 -23 1 860 425 256 29 50 chr9 36133925 36134065 -87942107 - Lx5 LINE L1 -11 7039 6903 1 860 12600 107 18 10 chr9 36134071 36136727 -87939445 - L1Md_F LINE L1 -2796 3087 410 1 860 5354 150 14 7 chr9 36136720 36137757 -87938415 - L1VL2 LINE L1 -2489 1209 179 1 860 1371 174 171 0 chr9 36137792 36138073 -87938099 - ORR1A4 LTR MaLR 0 329 1 1 860 4492 144 9 1 chr9 36139798 36140575 -87935597 - MusHAL1 LINE L1 -783 1929 1147 1 860 1190 191 188 16 chr9 36140570 36140873 -87935299 - L1VL2 LINE L1 -5919 499 145 1 860 1567 167 116 0 chr9 36141524 36141818 -87934354 - ORR1A4 LTR MaLR 0 329 2 1 860 12293 137 11 7 chr9 36143908 36145303 -87930869 + L1VL4 LINE L1 573 1988 -1829 1 860 182 37 37 0 chr9 36145303 36145330 -87930842 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 860 12293 123 13 3 chr9 36145330 36146486 -87929686 + L1VL4 LINE L1 1989 3146 -671 1 860 26873 128 24 8 chr9 36146510 36152562 -87923610 - L1_Mus2 LINE L1 -1 6565 415 1 860 1676 171 72 0 chr9 36152570 36152863 -87923309 + MTC LTR MaLR 108 421 0 1 860 1037 274 90 12 chr9 36152884 36153461 -87922711 + L1MCa LINE L1 1500 2121 -4387 1 860 2493 240 47 51 chr9 36153469 36154313 -87921859 - Lx9 LINE L1 -9 7635 6795 1 860 441 281 138 4 chr9 36154319 36154558 -87921614 + L1MCa LINE L1 2139 2409 -4099 1 860 219 222 22 0 chr9 36154622 36154667 -87921505 - B4 SINE B4 -230 62 17 1 860 398 267 107 10 chr9 36154690 36154887 -87921285 + L1MCa LINE L1 2436 2651 -3670 1 860 929 244 90 5 chr9 36154910 36155277 -87920895 + L1MCa LINE L1 2862 3259 -3062 1 860 944 293 95 20 chr9 36155264 36155716 -87920456 + L1MCa LINE L1 5470 5955 -553 1 860 734 288 116 0 chr9 36155728 36155943 -87920229 + MTE2b LTR MaLR 128 367 -12 1 860 1259 112 7 2 chr9 36156000 36156232 -87919940 - Lx3A LINE L1 -952 6057 5770 1 860 781 114 0 0 chr9 36156232 36156346 -87919826 + L1Md_F LINE L1 256 369 -6150 1 860 1768 316 11 8 chr9 36156355 36157002 -87919170 + MYSERV6-int LTR ERVK 633 1281 -7678 1 860 12347 239 32 21 chr9 36157029 36160277 -87915895 + MYSERV6-int LTR ERVK 1333 4615 -4344 1 860 290 173 19 19 chr9 36160328 36160434 -87915738 + (TATATG)n Simple_repeat Simple_repeat 1 106 0 1 860 312 265 19 19 chr9 36160471 36160575 -87915597 + MYSERV6-int LTR ERVK 4523 4626 -1924 1 860 1206 244 64 96 chr9 36160588 36160870 -87915302 + MYSERV16_I-int LTR ERVK 400 670 -1656 1 860 3986 19 51 0 chr9 36160870 36161339 -87914833 + MT2_Mm LTR ERVL 1 493 0 1 860 1206 244 64 96 chr9 36161339 36161650 -87914522 + MYSERV16_I-int LTR ERVK 671 974 -1352 1 860 6180 49 0 3 chr9 36161650 36162411 -87913761 - L1Md_F2 LINE L1 0 6582 5824 1 860 21182 61 3 1 chr9 36162411 36165144 -87911028 + L1Md_F2 LINE L1 3063 5799 -84 1 860 993 160 49 43 chr9 36165144 36165495 -87910677 + MYSERV16_I-int LTR ERVK 967 1373 -953 1 860 3739 201 74 1 chr9 36165799 36166695 -87909477 + MYSERV16_I-int LTR ERVK 1363 2323 -3 1 860 2139 152 52 5 chr9 36166695 36167098 -87909074 + BGLII_Mus LTR ERVK 1 422 0 1 860 21 0 0 0 chr9 36167859 36167880 -87908292 + AT_rich Low_complexity Low_complexity 1 21 0 1 860 742 128 0 23 chr9 36168015 36168143 -87908029 - RLTR15 LTR ERVK 0 359 235 1 860 883 64 176 0 chr9 36168179 36168304 -87907868 - B1_Mm SINE Alu 0 147 1 2 860 6519 152 19 9 chr9 36168313 36169418 -87906754 - Lx2 LINE L1 0 6997 5882 2 860 1331 187 65 4 chr9 36169419 36169682 -87906490 - RLTR15 LTR ERVK -75 284 6 1 860 2985 196 52 22 chr9 36169770 36170438 -87905734 - RLTR17 LTR ERVK -2 690 3 2 860 511 270 39 34 chr9 36171965 36172172 -87904000 - Lx9 LINE L1 -232 7412 7205 2 860 264 285 19 62 chr9 36172217 36172378 -87903794 + Lx9 LINE L1 7490 7643 -1 2 860 726 320 60 47 chr9 36172682 36173086 -87903086 - MTD LTR MaLR -15 404 5 2 860 333 351 75 112 chr9 36173276 36173597 -87902575 + MLT1D LTR MaLR 181 489 -16 2 860 5500 59 0 1 chr9 36174119 36174849 -87901323 - L1_Mm LINE L1 -314 5569 4841 2 860 249 135 0 0 chr9 36174843 36174880 -87901292 + L1Md_F2 LINE L1 5550 5586 -297 2 860 7898 43 7 11 chr9 36174880 36175776 -87900396 + L1Md_F2 LINE L1 5587 6488 -94 2 107 3384 45 67 5 chr9 36175776 36176223 -87899949 + IAPLTR2_Mm LTR ERVK 1 475 0 2 861 7898 43 7 11 chr9 36176223 36176313 -87899859 + L1Md_F2 LINE L1 6489 6569 -13 2 861 378 0 0 0 chr9 36176350 36176392 -87899780 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2 861 9203 269 75 41 chr9 36177467 36179021 -87897151 - Lx7 LINE L1 -1133 6563 4953 2 861 1920 207 69 26 chr9 36179021 36179527 -87896645 - RLTR12B LTR ERVK 0 528 1 2 861 9203 255 95 55 chr9 36179527 36181618 -87894554 - Lx7 LINE L1 -928 4952 2708 2 861 244 211 78 17 chr9 36181618 36181734 -87894438 - RMER17D LTR ERVK -373 516 394 2 861 9203 255 95 55 chr9 36181734 36183336 -87892836 - Lx7 LINE L1 -928 2707 986 2 861 329 163 0 4 chr9 36183780 36183839 -87892333 - MTD LTR MaLR 0 419 368 2 861 36884 54 12 3 chr9 36183877 36190333 -87885839 - L1Md_T LINE L1 -2 6580 105 2 861 1002 301 84 16 chr9 36190341 36190652 -87885520 - MTD LTR MaLR -70 349 18 2 861 1089 313 39 25 chr9 36190857 36191217 -87884955 - MTEa LTR MaLR -12 367 3 2 861 1206 238 181 6 chr9 36191305 36191664 -87884508 - BGLII_B LTR ERVK -19 422 1 2 861 44 46 0 0 chr9 36191758 36191823 -87884349 + AT_rich Low_complexity Low_complexity 1 65 0 2 861 1468 297 23 18 chr9 36192091 36192485 -87883687 + MTD LTR MaLR 22 417 -2 2 861 2322 216 64 25 chr9 36192543 36193366 -87882806 - L1_Mur3 LINE L1 -4448 1432 573 2 861 1096 346 45 10 chr9 36193747 36194372 -87881800 - Lx8 LINE L1 -192 7281 6635 2 861 513 78 21 32 chr9 36194823 36194916 -87881256 + (TTTCC)n Simple_repeat Simple_repeat 3 94 0 2 861 676 265 54 5 chr9 36194927 36195132 -87881040 - Lx4B LINE L1 -33 7025 6811 2 861 410 87 61 38 chr9 36196469 36196601 -87879571 + T-rich Low_complexity Low_complexity 1 135 0 2 861 780 89 192 8 chr9 36196601 36196726 -87879446 - B1_Mus1 SINE Alu 0 148 1 2 861 3103 139 35 4 chr9 36198204 36198722 -87877450 - Lx LINE L1 -5 6649 6116 2 861 5647 35 0 0 chr9 36198722 36199385 -87876787 + L1Md_T LINE L1 5920 6582 0 2 861 21 0 0 0 chr9 36199393 36199414 -87876758 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 1159 185 0 0 chr9 36199414 36199630 -87876542 - Lx2 LINE L1 -518 6479 6264 2 861 2098 88 0 20 chr9 36199631 36199933 -87876239 + L1Md_F2 LINE L1 6276 6571 -11 2 861 33 25 0 0 chr9 36199960 36200000 -87876172 + AT_rich Low_complexity Low_complexity 1 40 0 2 861 1759 279 112 21 chr9 36200103 36200952 -87875220 - Lx9 LINE L1 -157 7487 6389 2 861 36613 43 13 16 chr9 36201652 36207485 -87868687 - L1Md_T LINE L1 0 6585 590 2 861 226 316 59 59 chr9 36207485 36207586 -87868586 - RLTR45 LTR ERVK -378 104 4 2 861 36613 43 13 16 chr9 36207586 36208094 -87868078 - L1Md_T LINE L1 0 589 66 2 861 281 240 0 0 chr9 36208139 36208189 -87867983 + B1F1 SINE Alu 10 59 -90 2 861 273 269 29 29 chr9 36208189 36208208 -87867964 + ID_B1 SINE B4 91 159 -65 2 861 1118 146 14 18 chr9 36208574 36208791 -87867381 + Lx LINE L1 6412 6627 -27 2 861 21 0 0 0 chr9 36208803 36208824 -87867348 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 23 54 0 0 chr9 36210196 36210233 -87865939 + AT_rich Low_complexity Low_complexity 1 37 0 2 861 4239 152 48 25 chr9 36211211 36212002 -87864170 - RMER17D2 LTR ERVK 0 809 1 2 861 260 322 90 33 chr9 36212553 36212675 -87863497 - ORR1E LTR MaLR -149 210 82 2 861 297 0 0 0 chr9 36212902 36212935 -87863237 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 861 209 200 46 0 chr9 36213171 36213236 -87862936 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 861 479 341 24 5 chr9 36213402 36213614 -87862558 - B3 SINE B2 0 216 1 2 861 320 222 0 0 chr9 36213682 36213736 -87862436 + RSINE1 SINE B4 76 129 -36 2 861 308 244 94 17 chr9 36214022 36214139 -87862033 - BC1_Mm scRNA scRNA -18 134 9 2 861 1461 246 107 16 chr9 36214386 36214770 -87861402 - MTD LTR MaLR 0 419 1 2 861 29466 90 20 9 chr9 36214842 36220055 -87856117 - L1Md_F2 LINE L1 -11 6571 1290 2 861 240 35 0 0 chr9 36220057 36220086 -87856086 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 861 6484 41 12 0 chr9 36220086 36220865 -87855307 - L1Md_F2 LINE L1 -16 6566 5779 2 861 7627 44 3 2 chr9 36220867 36222277 -87853895 - L1Md_F2 LINE L1 -14 6568 5158 2 861 5257 144 58 1 chr9 36222277 36223232 -87852940 - L1Md_F2 LINE L1 -5705 1279 273 2 861 1031 283 40 50 chr9 36223294 36223595 -87852577 - MTEb LTR MaLR -5 374 77 2 861 4898 157 16 5 chr9 36223962 36224783 -87851389 - RMER17B LTR ERVK -19 939 110 2 861 1561 156 59 22 chr9 36224850 36225205 -87850967 + RLTR9A LTR ERVK 1 368 0 2 861 7437 80 3 2 chr9 36225463 36227031 -87849141 - L1Md_F2 LINE L1 -13 6569 5000 2 861 500 0 0 16 chr9 36227155 36227216 -87848956 + (GTTTG)n Simple_repeat Simple_repeat 2 61 0 2 861 915 152 0 0 chr9 36227216 36227354 -87848818 - B1_Mus1 SINE Alu -9 139 2 2 861 345 24 0 0 chr9 36227407 36227449 -87848723 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 861 3824 214 263 10 chr9 36227606 36228603 -87847569 - Lx7 LINE L1 -1601 6095 4706 2 861 405 0 0 0 chr9 36228603 36228648 -87847524 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 861 3824 211 309 11 chr9 36228648 36229578 -87846594 - Lx7 LINE L1 -1175 4705 3634 2 861 1175 301 88 14 chr9 36229625 36230547 -87845625 - Lx7 LINE L1 -4379 1501 523 2 861 4526 138 69 30 chr9 36230555 36231469 -87844703 - RMER17B LTR ERVK 0 958 36 2 861 12351 135 20 10 chr9 36231469 36234288 -87841884 - L1VL4 LINE L1 -482 3077 235 2 861 28 61 0 0 chr9 36234455 36234504 -87841668 + AT_rich Low_complexity Low_complexity 1 49 0 2 861 231 61 0 0 chr9 36234552 36234585 -87841587 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 861 2742 116 42 0 chr9 36234837 36235267 -87840905 - Lx3_Mus LINE L1 -8 7001 6554 2 861 2014 137 3 0 chr9 36235267 36235588 -87840584 + Lx3_Mus LINE L1 6224 6545 -464 2 861 362 57 0 19 chr9 36235717 36235771 -87840401 + (TTG)n Simple_repeat Simple_repeat 2 54 0 2 861 323 374 24 15 chr9 36235820 36236026 -87840146 - ID_B1 SINE B4 -16 208 1 2 861 447 19 0 0 chr9 36236861 36236913 -87839259 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 861 249 98 0 0 chr9 36236913 36236953 -87839219 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 861 1031 278 160 14 chr9 36237517 36237867 -87838305 - MTD LTR MaLR -14 405 5 2 861 531 31 0 0 chr9 36238400 36238465 -87837707 + (TTG)n Simple_repeat Simple_repeat 2 66 0 2 861 2614 148 68 6 chr9 36238472 36238970 -87837202 + Lx2 LINE L1 6463 6991 -6 2 861 203 175 0 0 chr9 36242267 36242307 -87833865 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 861 4760 209 64 16 chr9 36242549 36244036 -87832136 - Lx2B LINE L1 -12 6988 5396 2 861 1376 12 0 0 chr9 36244031 36244196 -87831976 - L1Md_F2 LINE L1 -640 5942 5778 2 861 5410 47 3 0 chr9 36244196 36244857 -87831315 + L1Md_F2 LINE L1 5908 6570 -12 2 861 576 180 2 0 chr9 36244860 36244975 -87831197 - Lx2B LINE L1 -2552 5443 5309 2 861 213 404 26 7 chr9 36244998 36245150 -87831022 - RSINE1 SINE B4 0 165 11 2 861 339 353 29 29 chr9 36245198 36245338 -87830834 + RSINE1 SINE B4 21 160 -5 2 861 262 250 131 15 chr9 36245443 36245573 -87830599 - L1ME1 LINE L1 -106 6073 5929 2 861 460 301 16 0 chr9 36245693 36245816 -87830356 + ID_B1 SINE B4 95 219 -5 2 861 21 0 0 0 chr9 36246197 36246218 -87829954 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 6337 191 55 14 chr9 36246320 36246794 -87829378 - L1_Mur2 LINE L1 -2203 3674 3185 2 861 243 0 0 0 chr9 36246794 36246821 -87829351 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 861 6337 191 55 14 chr9 36246821 36247904 -87828268 - L1_Mur2 LINE L1 -2693 3184 2053 2 861 432 0 0 0 chr9 36247904 36247952 -87828220 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 861 6337 191 55 14 chr9 36247952 36248009 -87828163 - L1_Mur2 LINE L1 -3825 2052 1994 2 861 1519 148 0 0 chr9 36248692 36248928 -87827244 - RLTR27 LTR ERVK 0 309 74 2 861 2933 154 25 44 chr9 36249163 36249735 -87826437 - RLTR31_Mm LTR ERVK 0 561 1 2 861 21 0 0 0 chr9 36250333 36250354 -87825818 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 397 182 75 101 chr9 36251069 36251228 -87824944 - RNLTR23 LTR ERVK -9 633 479 2 861 234 0 0 0 chr9 36252603 36252629 -87823543 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 861 2909 210 63 14 chr9 36252784 36253768 -87822404 - Lx7 LINE L1 -1601 6095 5059 2 861 268 133 0 32 chr9 36253785 36253847 -87822325 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 861 2949 226 63 12 chr9 36253847 36254795 -87821377 - Lx7 LINE L1 -1251 4629 3633 2 861 1493 309 64 26 chr9 36254862 36255657 -87820515 - Lx7 LINE L1 -4377 1503 683 2 861 432 0 0 0 chr9 36255657 36255705 -87820467 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 861 1493 325 54 36 chr9 36255705 36256004 -87820168 - Lx7 LINE L1 -7046 682 372 2 861 635 262 44 0 chr9 36256014 36256174 -87819998 + Lx8 LINE L1 6933 7099 -374 2 861 33 25 0 0 chr9 36256219 36256259 -87819913 + AT_rich Low_complexity Low_complexity 1 40 0 2 861 19717 170 32 7 chr9 36256347 36259411 -87816761 - Lx LINE L1 -2 6652 3486 2 861 231 36 0 0 chr9 36259411 36259439 -87816733 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 861 19717 187 39 11 chr9 36259439 36261594 -87814578 - Lx LINE L1 -2398 3485 1290 2 861 220 97 0 0 chr9 36261616 36261647 -87814525 - B3 SINE B2 -184 32 2 2 861 3273 182 24 26 chr9 36261647 36262364 -87813808 - L1VL4 LINE L1 -5353 949 235 2 861 31 26 0 0 chr9 36262520 36262558 -87813614 + AT_rich Low_complexity Low_complexity 1 38 0 2 861 378 85 0 0 chr9 36262603 36262662 -87813510 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 861 352 365 28 14 chr9 36263073 36263284 -87812888 - ID_B1 SINE B4 -10 214 1 3 861 17882 141 21 18 chr9 36263425 36267348 -87808824 + L1Md_F LINE L1 507 4368 -1518 3 861 3038 48 0 0 chr9 36267348 36267702 -87808470 + IAPEY2_LTR LTR ERVK 1 354 -3 3 861 628 173 48 66 chr9 36267702 36267869 -87808303 + IAPLTR4_I LTR ERVK 17 180 -1290 3 861 8357 139 13 37 chr9 36267868 36269363 -87806809 + IAPEY3-int LTR ERVK 524 1982 -5698 3 861 3359 67 9 0 chr9 36269340 36269788 -87806384 + IAPEY3-int LTR ERVK 2238 2689 -4991 3 861 180 386 44 0 chr9 36269803 36269917 -87806255 + L3b LINE CR1 335 453 -29 3 861 2628 151 15 48 chr9 36269918 36270573 -87805599 + MMERVK10C-int LTR ERVK 6974 7581 0 3 861 3048 56 0 0 chr9 36270573 36270930 -87805242 + IAPEY2_LTR LTR ERVK 1 357 0 3 861 9207 104 5 8 chr9 36270930 36273141 -87803031 + L1_Mus1 LINE L1 4360 6566 -1 3 861 24 0 0 0 chr9 36273179 36273203 -87802969 + AT_rich Low_complexity Low_complexity 1 24 0 3 861 21095 173 24 51 chr9 36273230 36274679 -87801493 + L1_Mus3 LINE L1 609 2056 -3827 3 861 991 49 0 0 chr9 36274679 36274802 -87801370 + B1_Mus2 SINE Alu 24 146 -1 3 861 21095 173 24 51 chr9 36274802 36276826 -87799346 + L1_Mus3 LINE L1 2057 4081 -1802 3 861 543 31 0 0 chr9 36276826 36276891 -87799281 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 3 861 21095 135 23 5 chr9 36276891 36279412 -87796760 + L1_Mus3 LINE L1 4082 6635 -3 3 861 504 0 0 0 chr9 36280159 36280215 -87795957 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 861 402 57 0 0 chr9 36280215 36280267 -87795905 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 861 529 259 55 63 chr9 36280828 36281018 -87795154 - MTD LTR MaLR -14 405 165 3 861 3181 63 0 8 chr9 36281018 36281417 -87794755 + MTA_Mm LTR MaLR 1 396 0 3 861 513 288 86 18 chr9 36281417 36281580 -87794592 - MTD LTR MaLR -241 178 5 3 861 432 0 0 0 chr9 36282110 36282158 -87794014 + (TGG)n Simple_repeat Simple_repeat 1 48 0 3 861 252 0 0 0 chr9 36282159 36282187 -87793985 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 861 2770 181 15 4 chr9 36282194 36282715 -87793457 + Lx2 LINE L1 6463 6989 -8 3 861 24 32 0 0 chr9 36282716 36282747 -87793425 + AT_rich Low_complexity Low_complexity 1 31 0 3 861 257 325 46 61 chr9 36285379 36285510 -87790662 - ORR1E LTR MaLR -170 189 61 3 861 3669 205 65 11 chr9 36286076 36287659 -87788513 - Lx2B LINE L1 -2 6998 5319 3 861 29 18 0 35 chr9 36287866 36287883 -87788289 + AT_rich Low_complexity Low_complexity 1 17 0 3 861 1575 32 0 11 chr9 36287883 36288071 -87788101 + B2_Mm1a SINE B2 1 186 -7 3 861 4516 149 46 20 chr9 36288081 36288882 -87787290 + Lx3B LINE L1 6152 6973 0 3 861 29 18 0 35 chr9 36288882 36288911 -87787261 + AT_rich Low_complexity Low_complexity 1 29 0 3 861 407 307 52 97 chr9 36288928 36289083 -87787089 + RSINE1 SINE B4 11 158 -7 3 861 810 30 0 0 chr9 36289084 36289185 -87786987 + (TC)n Simple_repeat Simple_repeat 1 101 0 3 861 229 252 115 23 chr9 36289205 36289335 -87786837 - L1ME1 LINE L1 -24 6155 6014 3 861 357 131 0 0 chr9 36289414 36289475 -87786697 + (T)n Simple_repeat Simple_repeat 1 61 0 3 861 396 250 62 0 chr9 36289565 36289661 -87786511 + PB1D7 SINE Alu 14 115 -5 3 861 929 308 46 84 chr9 36290559 36290953 -87785219 - MTEb LTR MaLR 0 379 1 3 861 437 320 76 17 chr9 36290963 36291201 -87784971 + MER47B DNA MER2_type 99 350 -68 3 861 2585 205 64 100 chr9 36291202 36291703 -87784469 - RLTR33 LTR ERVK 0 678 187 3 861 1218 35 7 0 chr9 36291703 36291848 -87784324 - B1_Mm SINE Alu 0 147 2 3 861 2585 205 64 100 chr9 36291848 36292049 -87784123 - RLTR33 LTR ERVK -492 186 1 3 861 227 283 158 16 chr9 36292251 36292434 -87783738 - L1ME1 LINE L1 -493 5686 5478 3 861 1542 180 20 6 chr9 36292526 36292873 -87783299 - L1_Mur3 LINE L1 -4089 1791 1440 3 861 21 0 0 0 chr9 36292907 36292928 -87783244 + AT_rich Low_complexity Low_complexity 1 21 0 3 861 402 219 43 9 chr9 36292952 36293067 -87783105 - RMER1C Other Other 0 1342 1224 3 861 207 0 0 0 chr9 36293069 36293092 -87783080 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 861 37671 11 11 17 chr9 36293128 36294776 -87781396 - L1Md_A LINE L1 0 6582 4929 3 861 231 180 45 76 chr9 36294776 36294842 -87781330 + RMER20A LTR ERVK 185 248 -268 3 861 37671 11 11 17 chr9 36294842 36299313 -87776859 - L1Md_A LINE L1 0 4928 439 3 861 3217 197 22 30 chr9 36299330 36299749 -87776423 - L1_Mur2 LINE L1 -3870 2007 1581 3 861 1632 37 0 0 chr9 36299749 36299939 -87776233 - B2_Mm1a SINE B2 -2 191 2 3 861 3217 197 22 30 chr9 36299939 36300178 -87775994 - L1_Mur2 LINE L1 -4297 1580 1354 3 861 2934 38 3 0 chr9 36300178 36300523 -87775649 + ORR1A1 LTR MaLR 1 346 0 3 861 3217 196 49 0 chr9 36300523 36300902 -87775270 - L1_Mur2 LINE L1 -4524 1353 942 3 861 189 0 0 0 chr9 36300902 36300923 -87775249 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 861 1134 259 74 2 chr9 36300923 36300997 -87775175 - L1_Mur2 LINE L1 -6043 941 868 3 861 1118 268 40 49 chr9 36301512 36302042 -87774130 - Lx9 LINE L1 -65 7579 7055 3 861 1797 158 150 11 chr9 36302042 36302401 -87773771 - RLTR9E LTR ERVK 0 409 1 3 861 395 111 13 65 chr9 36302403 36302480 -87773692 - ETnERV2-int LTR ERVK -3 7403 7331 3 861 1993 192 174 7 chr9 36302481 36302942 -87773230 - RLTR13D6 LTR ERVK -364 538 1 3 861 1531 137 16 0 chr9 36302951 36303199 -87772973 - ETnERV3-int LTR ERVK -28 5780 5529 3 861 341 137 0 49 chr9 36303199 36303280 -87772892 - ETnERV3-int LTR ERVK -1172 6072 6009 3 861 3712 158 43 58 chr9 36303376 36305310 -87770862 - ETnERV2-int LTR ERVK -1801 5443 2371 3 861 2683 174 34 22 chr9 36305327 36305880 -87770292 - ETnERV2-int LTR ERVK -4419 2987 2428 3 107 4178 149 68 79 chr9 36305877 36307195 -87768977 - ETnERV2-int LTR ERVK -5321 2085 2 3 862 394 86 0 0 chr9 36307197 36307255 -87768917 - RLTR9E LTR ERVK 0 393 336 3 862 2047 123 33 7 chr9 36307255 36307558 -87768614 - RLTR10E LTR ERVK 0 311 1 3 862 551 125 0 0 chr9 36307558 36307646 -87768526 - MMERVK10C-int LTR ERVK 0 7581 7494 3 862 12599 72 4 21 chr9 36307643 36309417 -87766755 - MMERVK10C-int LTR ERVK -774 6807 5065 3 862 69 0 0 0 chr9 36309417 36309486 -87766686 + AT_rich Low_complexity Low_complexity 1 69 0 3 862 10458 96 1 0 chr9 36309499 36310996 -87765176 - MMERVK10C-int LTR ERVK -5642 1939 441 3 862 1207 138 15 0 chr9 36311141 36311337 -87764835 - MMERVK10C-int LTR ERVK -7155 426 228 3 862 280 136 0 43 chr9 36311340 36311386 -87764786 - RLTR27 LTR ERVK -35 274 231 3 862 553 81 47 0 chr9 36311389 36311475 -87764697 - MMERVK10C-int LTR ERVK -7491 90 1 3 862 1846 100 147 4 chr9 36311475 36311747 -87764425 - RLTR10E LTR ERVK 0 311 1 3 862 1587 142 126 6 chr9 36311749 36311779 -87764393 - RLTR9E LTR ERVK -53 356 318 3 862 555 16 0 0 chr9 36311779 36311843 -87764329 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 862 1587 142 126 6 chr9 36311843 36312130 -87764042 - RLTR9E LTR ERVK -92 317 2 3 862 358 250 10 0 chr9 36312159 36312263 -87763909 - Lx9 LINE L1 -617 7027 6923 3 862 192 234 0 0 chr9 36312314 36312361 -87763811 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 862 2641 154 75 9 chr9 36312363 36312927 -87763245 + L1_Mur2 LINE L1 2047 2647 -3230 3 862 4456 168 49 23 chr9 36312927 36313721 -87762451 - RMER17B LTR ERVK -141 817 3 3 862 3482 171 39 0 chr9 36313748 36314280 -87761892 + L1_Mur2 LINE L1 3517 4061 -1816 3 862 893 55 14 14 chr9 36314280 36314427 -87761745 + (TAGA)n Simple_repeat Simple_repeat 3 149 0 3 862 3482 171 39 0 chr9 36314427 36314617 -87761555 + L1_Mur2 LINE L1 4062 4266 -1611 3 862 305 188 200 52 chr9 36314808 36314901 -87761271 + RLTR43A LTR ERVK 210 303 -61 3 862 576 0 0 0 chr9 36314901 36314965 -87761207 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 862 305 188 200 52 chr9 36314965 36315006 -87761166 + RLTR43A LTR ERVK 304 364 0 3 862 206 182 23 0 chr9 36315460 36315504 -87760668 + A-rich Low_complexity Low_complexity 1 45 0 3 862 2050 159 147 39 chr9 36315744 36316254 -87759918 + RMER16-int LTR ERVK 255 819 -4587 3 862 1297 203 121 117 chr9 36316257 36316494 -87759678 + RMER16-int LTR ERVK 1078 1345 -4061 3 862 246 286 0 0 chr9 36316494 36316550 -87759622 + MTC-int LTR MaLR 482 537 -721 3 862 1297 203 121 117 chr9 36316550 36316736 -87759436 + RMER16-int LTR ERVK 1346 1558 -3848 3 862 924 315 35 39 chr9 36316749 36316983 -87759189 + ETnERV2-int LTR ERVK 3042 3274 -2893 3 862 7292 18 4 0 chr9 36316983 36317802 -87758370 + RLTR13B2 LTR ERVK 1 822 0 3 862 1909 244 23 9 chr9 36317802 36318276 -87757896 + ETnERV2-int LTR ERVK 4083 4535 -2871 3 862 3191 186 26 46 chr9 36318340 36318787 -87757385 + ETnERV2-int LTR ERVK 5125 5566 -1840 3 862 1065 94 0 0 chr9 36318787 36318925 -87757247 + B1_Mm SINE Alu 1 138 -9 3 862 585 76 0 0 chr9 36318925 36319004 -87757168 + (GGGAGA)n Simple_repeat Simple_repeat 6 84 0 3 862 3191 187 62 40 chr9 36319004 36319290 -87756882 + ETnERV2-int LTR ERVK 5567 5806 -1600 3 862 961 172 46 6 chr9 36319289 36319464 -87756708 + ETnERV2-int LTR ERVK 3795 3976 -1430 3 862 1572 216 75 40 chr9 36320695 36320775 -87755397 + ETnERV2-int LTR ERVK 6644 6720 -686 3 862 2860 42 5 55 chr9 36320775 36321157 -87755015 + RLTR10B2 LTR ERVK 3 365 0 3 862 1572 216 75 40 chr9 36321157 36321477 -87754695 + ETnERV2-int LTR ERVK 6721 7058 -348 3 862 430 184 120 42 chr9 36321677 36321819 -87754353 + RLTR43A LTR ERVK 212 364 0 3 862 1716 192 51 214 chr9 36321821 36322416 -87753756 + L1_Mur2 LINE L1 4262 4657 -1223 3 862 3621 96 34 6 chr9 36322416 36322948 -87753224 + Lx3_Mus LINE L1 6463 7009 0 3 862 1950 186 79 2 chr9 36322948 36323392 -87752780 + L1_Mur2 LINE L1 4657 5132 -748 3 862 6343 147 17 19 chr9 36323407 36325250 -87750922 - Lx LINE L1 -2 6652 4811 3 862 1723 268 82 123 chr9 36325250 36326216 -87749956 + RMER17B LTR ERVK 1 926 -32 3 862 5106 147 36 20 chr9 36326217 36327233 -87748939 - Lx LINE L1 -1067 4816 3784 3 862 433 101 0 37 chr9 36327226 36327308 -87748864 - L1_Mur1 LINE L1 -2512 3374 3296 3 862 2641 90 35 5 chr9 36327308 36327742 -87748430 + MusHAL1 LINE L1 1626 2072 -640 3 862 917 286 75 24 chr9 36327766 36328142 -87748030 - MYSERV-int LTR ERVK -1915 4635 4241 3 862 3020 36 3 0 chr9 36328142 36328505 -87747667 + L1Md_F2 LINE L1 6200 6563 -19 3 862 3847 197 35 10 chr9 36328787 36329665 -87746507 + Lx2B LINE L1 5813 6712 -288 3 862 302 0 26 0 chr9 36331087 36331125 -87745047 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 862 1606 182 118 18 chr9 36331391 36331905 -87744267 + RMER16-int LTR ERVK 192 670 -4736 3 862 574 161 33 17 chr9 36331908 36332028 -87744144 + RMER16-int LTR ERVK 1089 1210 -4196 3 862 1247 190 57 72 chr9 36332043 36332668 -87743504 + ETnERV2-int LTR ERVK 3008 4075 -3169 3 862 14518 88 6 2 chr9 36332668 36335675 -87740497 + L1Md_F2 LINE L1 399 3417 -2466 3 862 1879 54 0 0 chr9 36335675 36335917 -87740255 + L1Md_F2 LINE L1 5345 5586 -297 3 862 7971 56 0 1 chr9 36335917 36336901 -87739271 + L1Md_F2 LINE L1 5587 6569 -13 3 862 2166 146 40 15 chr9 36336908 36337311 -87738861 - RMER17D2 LTR ERVK -387 422 10 3 862 916 317 35 0 chr9 36337324 36337643 -87738529 - Lx8 LINE L1 -835 6638 6309 3 862 471 299 33 17 chr9 36337763 36337943 -87738229 - B3A SINE B2 -15 183 1 3 862 35 71 0 0 chr9 36338251 36338321 -87737851 + AT_rich Low_complexity Low_complexity 1 70 0 3 862 436 198 12 0 chr9 36338811 36338892 -87737280 - RLTR12B LTR ERVK 0 528 447 3 862 435 38 0 0 chr9 36338971 36339024 -87737148 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 862 462 18 0 0 chr9 36339311 36339366 -87736806 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 3 862 439 274 97 33 chr9 36339721 36339909 -87736263 + B3A SINE B2 10 216 0 3 862 232 301 43 14 chr9 36340000 36340138 -87736034 + L1M4 LINE L1 4623 4764 -1382 3 862 570 161 63 84 chr9 36340541 36340731 -87735441 - Lx9 LINE L1 0 7644 7459 3 862 591 282 7 0 chr9 36340748 36340897 -87735275 - MLT1A0 LTR MaLR -213 152 3 3 862 708 103 0 0 chr9 36341192 36341299 -87734873 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 862 520 242 0 0 chr9 36341309 36341404 -87734768 - B1_Mur2 SINE Alu -52 97 3 3 862 369 275 95 13 chr9 36343266 36343464 -87732708 - Tigger5 DNA MER2_type -71 2335 2211 3 862 1096 273 23 59 chr9 36343478 36343782 -87732390 + MTEa LTR MaLR 77 369 -10 3 862 337 169 69 14 chr9 36343941 36344013 -87732159 + MTD LTR MaLR 18 93 -326 3 862 2596 101 34 3 chr9 36344241 36344629 -87731543 - Lx LINE L1 0 6654 6255 3 862 998 224 143 39 chr9 36344629 36344908 -87731264 + MTD LTR MaLR 104 411 -8 3 862 270 343 0 0 chr9 36345164 36345231 -87730941 + BC1_Mm scRNA scRNA 5 71 -81 3 862 270 152 0 214 chr9 36345214 36345269 -87730903 + RMER6C LTR ERVK 625 676 -14 4 862 996 131 7 0 chr9 36345269 36345414 -87730758 + B1_Mus2 SINE Alu 1 146 -1 4 862 270 152 0 214 chr9 36345414 36345442 -87730730 + RMER6C LTR ERVK 677 690 0 4 862 1891 169 6 28 chr9 36345914 36346274 -87729898 + Lx2B LINE L1 6632 6983 -17 4 862 2712 103 9 5 chr9 36346303 36346722 -87729450 + BGLII LTR ERVK 1 421 0 4 862 815 102 8 0 chr9 36346777 36346905 -87729267 + (GGGA)n Simple_repeat Simple_repeat 4 132 0 4 862 452 173 112 28 chr9 36347456 36347563 -87728609 - RMER1A Other Other -167 863 748 4 862 1035 44 0 0 chr9 36347592 36347729 -87728443 + (TG)n Simple_repeat Simple_repeat 2 138 0 4 862 406 229 0 0 chr9 36347729 36347812 -87728360 + RMER1A Other Other 913 995 -35 4 862 2733 129 52 4 chr9 36348616 36349100 -87727072 - Lx3B LINE L1 -423 6550 6044 4 862 1481 119 51 4 chr9 36349801 36350054 -87726118 + L1_Mus3 LINE L1 6362 6626 -12 4 862 1284 79 0 0 chr9 36350116 36350294 -87725878 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4 862 299 130 0 18 chr9 36350296 36350351 -87725821 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 4 862 479 173 104 29 chr9 36350893 36351012 -87725160 - RMER1A Other Other -167 863 748 4 862 762 48 0 0 chr9 36351029 36351132 -87725040 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 862 446 237 0 33 chr9 36351132 36351254 -87724918 + RMER1A Other Other 913 1030 0 4 862 373 318 128 31 chr9 36352951 36353178 -87722994 - MLT1D LTR MaLR -57 448 200 4 862 401 0 20 0 chr9 36353191 36353240 -87722932 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 862 309 26 0 0 chr9 36353240 36353277 -87722895 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 862 434 282 194 34 chr9 36353287 36353669 -87722503 - L1MC LINE L1 -531 5802 5360 4 862 423 0 0 0 chr9 36353677 36353724 -87722448 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 862 235 294 0 0 chr9 36353787 36353855 -87722317 - L1MC LINE L1 -3399 2747 2680 4 862 7052 113 55 22 chr9 36354036 36355784 -87720388 + L1VL4 LINE L1 374 2185 -1374 4 862 4005 124 34 5 chr9 36355831 36356501 -87719671 - RMER16-int LTR ERVK -1601 3805 3116 4 862 800 88 44 0 chr9 36356501 36356638 -87719534 + Lx3_Mus LINE L1 5908 6050 -959 4 862 2513 92 14 0 chr9 36356680 36357027 -87719145 + Lx3_Mus LINE L1 6650 7001 -8 4 862 8221 138 35 1 chr9 36357038 36358958 -87717214 + Lx2 LINE L1 5005 6997 0 4 862 885 47 24 0 chr9 36359029 36359156 -87717016 + (GA)n Simple_repeat Simple_repeat 2 131 0 4 862 301 89 0 82 chr9 36359190 36359251 -87716921 + Lx4B LINE L1 6609 6664 -394 4 862 9226 177 40 43 chr9 36359259 36359559 -87716613 - MERVL_2A-int LTR ERVL -3088 2673 2375 4 862 513 0 0 0 chr9 36359559 36359616 -87716556 + (TGG)n Simple_repeat Simple_repeat 2 58 0 4 862 1978 162 23 0 chr9 36359624 36359969 -87716203 - Lx3C LINE L1 -4 6972 6620 4 862 9226 177 40 43 chr9 36359969 36361629 -87714543 - MERVL_2A-int LTR ERVL -3395 2366 713 4 862 216 0 0 0 chr9 36362250 36362274 -87713898 + (T)n Simple_repeat Simple_repeat 1 24 0 4 862 8105 25 0 0 chr9 36362577 36364092 -87712080 - L1Md_T LINE L1 0 6582 5068 4 862 27563 65 13 22 chr9 36364567 36369185 -87706987 - L1Md_F2 LINE L1 -11 6571 1995 4 862 449 248 16 32 chr9 36369219 36369344 -87706828 - MT2B LTR ERVL -476 125 3 4 862 37371 33 0 0 chr9 36369886 36375299 -87700873 - L1Md_T LINE L1 0 6582 1170 4 862 5192 169 24 27 chr9 36375305 36376634 -87699538 - L1Md_T LINE L1 -5411 1205 99 4 862 754 177 6 6 chr9 36377372 36377537 -87698635 + L1_Mur3 LINE L1 1836 2000 -3880 4 862 1958 148 35 25 chr9 36377544 36377910 -87698262 - L1_Mur1 LINE L1 -38 5848 5479 4 862 3590 259 62 11 chr9 36377914 36378996 -87697176 + Lx2 LINE L1 5861 6997 0 4 862 233 120 20 0 chr9 36378990 36379040 -87697132 + L1_Mur3 LINE L1 2007 2057 -3823 4 862 204 225 0 0 chr9 36379043 36379083 -87697089 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 862 233 189 0 0 chr9 36379105 36379158 -87697014 + L1_Mur3 LINE L1 2064 2116 -3764 4 862 5684 133 356 16 chr9 36379158 36380303 -87695869 + L1_Mus2 LINE L1 1363 3017 -2869 4 862 4952 42 11 3 chr9 36380303 36380916 -87695256 - L1Md_F3 LINE L1 -14 6570 5953 4 862 7963 142 62 18 chr9 36380916 36384139 -87692033 + L1_Mus2 LINE L1 3018 6559 -7 4 862 270 0 0 0 chr9 36384345 36384375 -87691797 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 862 1117 70 0 14 chr9 36384375 36384510 -87691662 - B1_Mus2 SINE Alu -8 139 5 4 862 361 282 91 22 chr9 36385125 36385357 -87690815 - L1MB8 LINE L1 -43 6135 5888 4 862 1296 84 0 64 chr9 36385383 36385587 -87690585 - B2_Mm2 SINE B2 -3 192 2 4 862 333 233 38 30 chr9 36385697 36385830 -87690342 + Lx9 LINE L1 7511 7644 0 4 862 1175 137 0 5 chr9 36386242 36386426 -87689746 + B2_Mm2 SINE B2 1 183 -12 4 862 386 38 0 19 chr9 36386426 36386479 -87689693 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 4 862 1097 123 6 0 chr9 36386484 36386663 -87689509 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 862 530 306 8 8 chr9 36386663 36386782 -87689390 - RSINE1 SINE B4 -44 121 2 4 862 210 306 0 0 chr9 36386805 36386854 -87689318 + RSINE1 SINE B4 3 51 -114 4 862 23 0 0 0 chr9 36387207 36387230 -87688942 + AT_rich Low_complexity Low_complexity 1 23 0 4 862 234 0 0 0 chr9 36388024 36388050 -87688122 + (A)n Simple_repeat Simple_repeat 1 26 0 4 862 2738 153 47 6 chr9 36388140 36388625 -87687547 + RLTR11A LTR ERVK 9 528 0 4 862 1444 199 28 47 chr9 36390227 36390943 -87685229 + L1_Mur3 LINE L1 857 1548 -4332 4 862 445 225 166 17 chr9 36391013 36391194 -87684978 - Lx7 LINE L1 0 7696 7489 4 862 1144 249 4 7 chr9 36391194 36391473 -87684699 + Lx5 LINE L1 6751 7028 -22 4 862 378 0 0 0 chr9 36391473 36391515 -87684657 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 4 862 2865 218 51 28 chr9 36391515 36392186 -87683986 - Lx6 LINE L1 -281 7179 6494 4 862 1624 199 0 3 chr9 36392182 36392495 -87683677 - Lx7 LINE L1 -1266 6430 6119 4 862 471 178 11 0 chr9 36392495 36392585 -87683587 + RLTR18-int LTR ERVK 123 213 -5148 4 862 354 288 23 53 chr9 36392607 36392739 -87683433 + RLTR18-int LTR ERVK 302 429 -4932 4 862 360 0 0 0 chr9 36392992 36393032 -87683140 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 862 27 0 0 0 chr9 36393126 36393153 -87683019 + AT_rich Low_complexity Low_complexity 1 27 0 4 862 4315 147 26 3 chr9 36393155 36393853 -87682319 + Lx2A1 LINE L1 6284 6997 -11 4 862 29 28 0 0 chr9 36393899 36393935 -87682237 + AT_rich Low_complexity Low_complexity 1 36 0 4 862 760 298 30 15 chr9 36393940 36394270 -87681902 + Lx7 LINE L1 6997 7331 -365 4 862 252 0 0 0 chr9 36394287 36394315 -87681857 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 862 34363 66 10 7 chr9 36394898 36401033 -87675139 + L1Md_F2 LINE L1 305 6456 -126 4 862 18124 20 0 0 chr9 36401029 36403227 -87672945 + L1Md_A LINE L1 3389 5586 -297 4 862 8651 23 0 0 chr9 36403227 36404222 -87671950 + L1Md_A LINE L1 5587 6581 -1 4 862 7996 156 42 21 chr9 36404222 36404644 -87671528 + L1_Mus4 LINE L1 4219 4640 -1243 4 862 213 65 0 0 chr9 36404644 36404675 -87671497 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 862 7996 156 42 21 chr9 36404675 36405033 -87671139 + L1_Mus4 LINE L1 4641 5026 -857 4 862 988 111 14 0 chr9 36405033 36405177 -87670995 + B1_Mus1 SINE Alu 1 146 -2 4 862 7996 156 42 21 chr9 36405177 36405203 -87670969 + L1_Mus4 LINE L1 5027 5041 -842 4 862 848 37 9 0 chr9 36405203 36405311 -87670861 + (GGAA)n Simple_repeat Simple_repeat 1 109 0 4 862 7996 109 21 9 chr9 36405311 36406876 -87669296 + L1_Mus4 LINE L1 5042 6624 -12 4 862 1604 124 11 4 chr9 36407412 36407672 -87668500 + L1_Mus3 LINE L1 6374 6635 -3 4 862 277 296 57 43 chr9 36408437 36408578 -87667594 - MIRb SINE MIR -80 188 46 4 862 22 0 0 0 chr9 36408615 36408637 -87667535 + AT_rich Low_complexity Low_complexity 1 22 0 4 862 1358 255 31 38 chr9 36409070 36409482 -87666690 + RMER5 LTR ERV1 84 493 -41 4 862 4804 135 1 0 chr9 36409482 36410195 -87665977 + Lx2A1 LINE L1 6281 6994 -14 4 862 1637 155 3 34 chr9 36410203 36410524 -87665648 - Lx2 LINE L1 -645 6352 6042 4 862 605 56 56 0 chr9 36410525 36410614 -87665558 - B1_Mur3 SINE Alu -14 135 42 4 862 576 223 0 0 chr9 36410617 36410915 -87665257 + CT-rich Low_complexity Low_complexity 1 298 0 4 862 261 283 0 0 chr9 36410929 36410982 -87665190 - PB1D9 SINE Alu -66 54 2 4 862 260 344 21 53 chr9 36410982 36411024 -87665148 - B4 SINE B4 -153 139 48 4 862 373 284 123 6 chr9 36411025 36411188 -87664984 - L1M2 LINE L1 -733 5567 5386 4 862 329 115 0 0 chr9 36411193 36411245 -87664927 - Lx7 LINE L1 -3 7693 7642 4 862 1663 225 100 58 chr9 36411283 36411764 -87664408 - RLTR20B3 LTR ERVK -56 521 21 4 862 298 241 72 132 chr9 36411777 36412026 -87664146 - Lx7 LINE L1 -81 7615 7382 4 862 1707 139 14 3 chr9 36412033 36412322 -87663850 - L1_Mus3 LINE L1 0 6638 6347 4 862 14145 144 22 47 chr9 36412324 36414351 -87661821 - L1VL1 LINE L1 -1870 4013 2092 4 862 1082 103 7 0 chr9 36414351 36414497 -87661675 - B1_Mus1 SINE Alu 0 148 2 4 862 14145 134 44 36 chr9 36414497 36416058 -87660114 - L1VL1 LINE L1 -3792 2091 467 4 862 442 214 0 26 chr9 36416076 36416191 -87659981 - Lx7 LINE L1 -338 7358 7247 4 862 7114 118 29 7 chr9 36416193 36418180 -87657992 + Lx4A LINE L1 4698 6738 -320 4 862 420 232 10 0 chr9 36418178 36418277 -87657895 - Lx7 LINE L1 -980 6716 6617 4 862 1186 203 73 24 chr9 36418277 36418524 -87657648 + MTB_Mm LTR MaLR 1 259 -148 4 862 1520 189 14 11 chr9 36418520 36418803 -87657369 - ORR1B2 LTR MaLR -83 284 1 4 862 979 244 40 35 chr9 36418803 36419151 -87657021 - Lx7 LINE L1 -1373 6323 5974 4 862 235 222 25 0 chr9 36419203 36419284 -87656888 + CT-rich Low_complexity Low_complexity 3 85 0 4 862 6514 116 4 2 chr9 36419654 36421295 -87654877 - L1_Mus2 LINE L1 -1 6565 4922 4 862 14033 101 22 3 chr9 36421309 36424212 -87651960 + L1Md_F LINE L1 380 3339 -2544 4 862 36648 12 0 0 chr9 36424219 36429408 -87646764 + L1Md_A LINE L1 440 5586 -297 4 862 8814 16 0 0 chr9 36429409 36430404 -87645768 + L1Md_A LINE L1 5588 6582 0 4 862 15275 16 0 0 chr9 36430404 36432243 -87643929 + L1Md_A LINE L1 3748 5586 -297 4 862 8833 15 0 0 chr9 36432243 36433238 -87642934 + L1Md_A LINE L1 5587 6581 -1 4 862 3242 107 0 42 chr9 36433238 36433785 -87642387 + L1Md_F LINE L1 3330 3853 -2030 4 107 30707 90 3 9 chr9 36433786 36439506 -87636666 + L1Md_F2 LINE L1 98 5586 -297 4 863 8128 46 2 2 chr9 36439507 36440502 -87635670 + L1Md_F2 LINE L1 5588 6582 0 4 863 730 206 0 0 chr9 36440522 36440645 -87635527 + B1_Mur1 SINE Alu 9 131 -18 4 863 2611 73 0 3 chr9 36440645 36440990 -87635182 + MTA_Mm LTR MaLR 1 344 -52 4 863 13888 87 2 8 chr9 36441000 36443261 -87632911 + L1_Mus1 LINE L1 3838 6081 -486 4 863 22 0 0 0 chr9 36443591 36443613 -87632559 + AT_rich Low_complexity Low_complexity 1 22 0 4 863 572 277 82 0 chr9 36446594 36446825 -87629347 + L1_Mur3 LINE L1 1666 1915 -3965 5 863 389 211 34 34 chr9 36446836 36446954 -87629218 + L1_Mur3 LINE L1 2127 2244 -3633 5 863 2153 259 59 98 chr9 36447399 36448414 -87627758 + L1_Mur3 LINE L1 2272 3247 -2633 5 863 226 224 0 43 chr9 36448400 36448470 -87627702 - L1_Mur2 LINE L1 -2563 3314 3248 5 863 357 81 316 18 chr9 36448472 36448586 -87627586 - B2_Mm2 SINE B2 -1 194 47 5 863 1201 108 78 0 chr9 36448618 36448784 -87627388 - B2_Mm1a SINE B2 -14 179 1 5 863 893 237 38 168 chr9 36448799 36448951 -87627221 - ORR1D2 LTR MaLR -43 327 184 5 863 1483 70 32 0 chr9 36448951 36449137 -87627035 + B2_Mm2 SINE B2 2 193 -2 5 863 893 237 38 168 chr9 36449137 36449354 -87626818 - ORR1D2 LTR MaLR -187 183 6 5 863 2315 155 12 34 chr9 36449416 36449824 -87626348 - MTB_Mm LTR MaLR 0 407 9 5 863 856 157 36 0 chr9 36449836 36449976 -87626196 + B1_Mm SINE Alu 2 146 -1 5 863 351 200 15 0 chr9 36450196 36450261 -87625911 + Lx8 LINE L1 6338 6403 -1070 5 863 307 116 4 0 chr9 36450263 36450316 -87625856 - B1_Mus2 SINE Alu -105 42 2 5 863 286 157 325 0 chr9 36450381 36450464 -87625708 - RLTR6-int LTR ERV1 -62 7716 7607 5 863 956 144 0 7 chr9 36450436 36450583 -87625589 - RLTR1B-int LTR ERV1 -80 3219 3074 5 863 224 122 24 0 chr9 36450700 36450741 -87625431 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 5 863 6337 88 1 4 chr9 36451851 36453558 -87622614 + L1Md_F LINE L1 374 2075 -3808 5 863 16576 73 5 8 chr9 36453566 36456334 -87619838 - L1Md_A LINE L1 -2568 3315 561 5 863 715 135 27 0 chr9 36456336 36456447 -87619725 - RMER16-int LTR ERVK -4204 1202 1089 5 863 354 200 52 26 chr9 36456452 36456529 -87619643 - RMER16-int LTR ERVK -4587 819 741 5 863 314 83 0 0 chr9 36456522 36456570 -87619602 - RMER16-int LTR ERVK -5218 188 141 5 863 988 112 30 36 chr9 36457039 36457205 -87618967 - LTRIS2 LTR ERV1 0 564 400 5 863 336 246 103 71 chr9 36457279 36457463 -87618709 - RLTR45-int LTR ERVK -6887 357 168 5 863 9009 111 20 17 chr9 36458179 36459590 -87616582 - Lx3B LINE L1 -24 6949 5527 5 863 3948 83 31 11 chr9 36459589 36460161 -87616011 + L1_Mur1 LINE L1 4395 4978 -908 5 863 42284 8 0 2 chr9 36460175 36467589 -87608583 - L1Md_A LINE L1 0 6582 1 5 863 1040 301 76 35 chr9 36468632 36469120 -87607052 + SRV_MM-int LTR ERVK 1848 2355 -3812 5 863 1665 135 14 33 chr9 36469120 36469667 -87606505 + RLTR1C LTR ERV1 1 605 0 5 863 698 330 10 7 chr9 36469692 36469985 -87606187 + SRV_MM-int LTR ERVK 2785 3078 -5139 5 863 2983 87 37 5 chr9 36470019 36470424 -87605748 + BGLII LTR ERVK 4 421 0 5 863 5706 258 56 13 chr9 36470424 36472271 -87603901 + ETnERV2-int LTR ERVK 2511 5195 -2211 5 863 381 245 83 32 chr9 36472273 36472429 -87603743 - RLTR43A LTR ERVK 0 364 201 5 863 4622 209 40 32 chr9 36472616 36473241 -87602931 + ETnERV2-int LTR ERVK 5192 5820 -1586 5 863 428 35 17 0 chr9 36473241 36473299 -87602873 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 5 863 4622 209 40 32 chr9 36473299 36473679 -87602493 + ETnERV2-int LTR ERVK 5821 6205 -1201 5 863 305 278 17 34 chr9 36474103 36474222 -87601950 + MMERGLN-int LTR ERV1 6156 6272 -1284 5 863 474 250 77 45 chr9 36474740 36474895 -87601277 + RLTR9E LTR ERVK 248 407 -2 5 863 385 271 66 52 chr9 36475463 36475480 -87600692 + RMER5 LTR ERV1 394 410 -124 5 863 3183 155 71 88 chr9 36475480 36476102 -87600070 + RMER19C LTR ERVK 1 611 0 5 863 385 271 66 52 chr9 36476102 36476220 -87599952 + RMER5 LTR ERV1 411 531 -3 5 863 4178 109 33 17 chr9 36476815 36477419 -87598753 + Lx4A LINE L1 6443 7056 -2 5 863 23 33 0 0 chr9 36478335 36478365 -87597807 + AT_rich Low_complexity Low_complexity 1 30 0 5 863 36906 45 9 0 chr9 36478512 36483806 -87592366 + L1Md_T LINE L1 306 5586 -297 5 863 9082 30 0 0 chr9 36483806 36484802 -87591370 + L1Md_T LINE L1 5587 6582 0 5 863 23 80 0 13 chr9 36485467 36485521 -87590651 + AT_rich Low_complexity Low_complexity 1 54 0 5 863 1127 225 14 0 chr9 36485521 36485734 -87590438 - B3 SINE B2 0 216 1 5 863 23 80 0 13 chr9 36485734 36485755 -87590417 + AT_rich Low_complexity Low_complexity 1 21 0 5 863 291 281 63 95 chr9 36485897 36486086 -87590086 + L1VL2 LINE L1 261 443 -5892 5 863 5974 164 4 3 chr9 36486087 36487077 -87589095 + L1_Mur1 LINE L1 4853 5843 -43 5 863 265 148 19 0 chr9 36487077 36487131 -87589041 + B1_Mus2 SINE Alu 93 147 0 5 863 876 205 48 95 chr9 36487218 36487428 -87588744 + B3 SINE B2 9 208 -8 5 863 489 17 0 0 chr9 36487687 36487745 -87588427 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 863 504 0 0 0 chr9 36487794 36487850 -87588322 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 863 1073 128 7 0 chr9 36487892 36488033 -87588139 + B1_Mus1 SINE Alu 1 142 -6 5 863 464 257 27 9 chr9 36488319 36488429 -87587743 + RLTR23 LTR ERV1 8 119 -311 5 863 228 298 71 65 chr9 36488451 36488620 -87587552 + RLTR23 LTR ERV1 91 260 -170 5 863 541 234 55 31 chr9 36489530 36489658 -87586514 + RSINE1 SINE B4 2 132 -33 5 863 252 0 0 0 chr9 36489801 36489829 -87586343 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 863 1104 114 0 0 chr9 36489929 36490096 -87586076 + (CA)n Simple_repeat Simple_repeat 2 168 0 5 863 1146 93 124 0 chr9 36490433 36490594 -87585578 + B2_Mm2 SINE B2 1 181 -14 5 863 391 87 7 28 chr9 36490641 36490743 -87585429 + B2_Mm2 SINE B2 47 181 -14 5 863 21 100 0 0 chr9 36490765 36490835 -87585337 + AT_rich Low_complexity Low_complexity 1 70 0 5 863 1511 65 16 21 chr9 36490972 36491162 -87585010 - B2_Mm2 SINE B2 -6 189 1 5 863 797 273 21 16 chr9 36491182 36491368 -87584804 - B3A SINE B2 -11 187 1 5 863 182 174 22 0 chr9 36491512 36491558 -87584614 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 863 1081 258 64 67 chr9 36491582 36491866 -87584306 + MTE2b LTR MaLR 36 322 -57 5 863 924 223 68 24 chr9 36491866 36492073 -87584099 - B3 SINE B2 0 216 1 5 863 1081 258 64 67 chr9 36492073 36492133 -87584039 + MTE2b LTR MaLR 323 379 0 5 863 301 261 215 7 chr9 36492138 36492273 -87583899 - L1M2 LINE L1 -3754 3091 2929 5 863 294 286 107 2 chr9 36492335 36492660 -87583512 - L1M2 LINE L1 -4029 2820 2465 5 863 433 260 64 16 chr9 36493064 36493189 -87582983 - RSINE1 SINE B4 -32 133 3 5 863 350 344 131 0 chr9 36493651 36493834 -87582338 + MLT1E2 LTR MaLR 351 557 -70 5 863 5401 153 45 35 chr9 36493877 36495062 -87581110 - Lx4B LINE L1 0 7050 5759 5 863 4116 108 126 5 chr9 36495528 36496130 -87580042 + RLTR33 LTR ERVK 4 678 0 5 863 325 234 24 47 chr9 36497045 36497130 -87579042 + BC1_Mm scRNA scRNA 2 84 -68 5 863 209 350 54 40 chr9 36497634 36497783 -87578389 - L2 LINE L2 -970 2449 2299 5 863 280 317 45 55 chr9 36498450 36498560 -87577612 + B1F1 SINE Alu 1 109 -40 5 863 281 279 0 0 chr9 36498544 36498612 -87577560 + ID4 SINE ID 6 73 -10 5 863 432 0 0 0 chr9 36498612 36498660 -87577512 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 863 443 346 15 0 chr9 36499811 36499941 -87576231 - L2b LINE L2 0 3375 3244 5 863 284 333 61 0 chr9 36501265 36501364 -87574808 + PB1D10 SINE Alu 2 106 -11 1 863 247 212 182 0 chr9 36502323 36502389 -87573783 + B1F SINE Alu 71 148 -1 2 863 748 189 42 7 chr9 36502497 36502641 -87573531 + B1_Mur4 SINE Alu 1 149 -1 3 863 1219 124 38 0 chr9 36502665 36502851 -87573321 + B2_Mm2 SINE B2 3 195 0 4 863 504 252 98 0 chr9 36502991 36503114 -87573058 + RSINE1 SINE B4 3 137 -28 5 863 432 273 61 0 chr9 36503404 36503503 -87572669 + PB1D7 SINE Alu 7 111 -9 6 863 243 0 0 0 chr9 36503505 36503532 -87572640 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 863 248 261 0 44 chr9 36503532 36503600 -87572572 + polypurine Low_complexity Low_complexity 2 66 0 8 863 320 227 78 26 chr9 36503980 36504057 -87572115 + ID4 SINE ID 2 82 -1 9 863 201 356 45 22 chr9 36504464 36504553 -87571619 + L2a LINE L2 3336 3426 0 1 863 271 231 314 0 chr9 36504869 36504963 -87571209 + PB1D10 SINE Alu 6 125 -2 1 863 514 308 22 8 chr9 36505099 36505233 -87570939 + RSINE1 SINE B4 1 136 -29 1 863 322 238 47 183 chr9 36506734 36507073 -87569099 - RLTR15 LTR ERVK -19 340 48 1 863 2322 199 84 8 chr9 36507092 36507684 -87568488 - MYSERV-int LTR ERVK -2 6548 5912 1 863 547 193 100 0 chr9 36507695 36507845 -87568327 - MYSERV6-int LTR ERVK -845 8114 7950 1 863 2957 73 59 42 chr9 36507846 36508320 -87567852 - Lx3_Mus LINE L1 -877 6132 5651 1 863 6225 88 10 6 chr9 36508320 36509188 -87566984 + Lx3_Mus LINE L1 6138 7009 0 1 863 684 176 70 27 chr9 36509205 36509392 -87566780 - MYSERV6-int LTR ERVK -997 7962 7768 1 863 409 296 118 6 chr9 36509394 36509564 -87566608 - RMER4A LTR ERVK -27 439 251 1 863 1168 270 57 60 chr9 36509575 36510336 -87565836 - MYSERV-int LTR ERVK -1543 783 103 1 863 346 224 109 58 chr9 36510459 36510615 -87565557 - RLTR15 LTR ERVK -195 164 1 1 863 22 70 0 0 chr9 36510793 36510836 -87565336 + AT_rich Low_complexity Low_complexity 1 43 0 1 863 217 315 14 14 chr9 36510848 36510940 -87565232 - MIRb SINE MIR -163 105 10 2 863 602 270 1 20 chr9 36511128 36511280 -87564892 - B1F SINE Alu -5 144 1 2 863 231 189 0 0 chr9 36511362 36511415 -87564757 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 863 1384 62 10 45 chr9 36513099 36513301 -87562871 + B2_Mm2 SINE B2 1 195 0 2 863 532 273 52 26 chr9 36513578 36513770 -87562402 - B3A SINE B2 0 198 2 2 863 610 295 57 78 chr9 36514189 36514382 -87561790 + L1M4c LINE L1 1323 1531 -4853 2 863 435 275 58 7 chr9 36514382 36514521 -87561651 + B1F1 SINE Alu 1 146 -3 2 863 610 295 57 78 chr9 36514521 36514742 -87561430 + L1M4c LINE L1 1532 1733 -4651 2 863 3265 148 181 13 chr9 36514742 36515373 -87560799 + RMER19A LTR ERVK 1 737 0 2 863 610 295 57 78 chr9 36515373 36515417 -87560755 + L1M4c LINE L1 1734 1772 -4612 2 863 1414 79 5 5 chr9 36515484 36515675 -87560497 + B2_Mm1t SINE B2 1 191 -2 2 863 223 319 29 14 chr9 36515703 36515773 -87560399 + ID4 SINE ID 9 79 -4 2 863 617 252 8 0 chr9 36515823 36515954 -87560218 + ID_B1 SINE B4 93 224 0 3 863 439 217 89 73 chr9 36516086 36516210 -87559962 + B1F SINE Alu 18 143 -6 3 863 845 234 110 4 chr9 36516255 36516431 -87559741 + L1MB4 LINE L1 5593 5784 -387 3 863 381 75 0 0 chr9 36516431 36516484 -87559688 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 863 845 237 109 5 chr9 36516484 36516681 -87559491 + L1MB4 LINE L1 5784 5995 -176 3 863 22 35 0 0 chr9 36517023 36517052 -87559120 + AT_rich Low_complexity Low_complexity 1 29 0 3 863 25 0 0 0 chr9 36518025 36518050 -87558122 + AT_rich Low_complexity Low_complexity 1 25 0 3 863 743 167 98 59 chr9 36518529 36518733 -87557439 + Lx4A LINE L1 6838 7049 -9 3 863 529 242 167 11 chr9 36518876 36519056 -87557116 - ID_B1 SINE B4 -15 209 2 3 863 578 256 134 82 chr9 36519230 36519498 -87556674 - MER44B DNA MER2_type -35 515 234 3 863 472 240 137 66 chr9 36519833 36520016 -87556156 + B3A SINE B2 3 198 0 3 863 264 77 0 0 chr9 36520032 36520071 -87556101 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 863 400 243 14 0 chr9 36520215 36520289 -87555883 + ID4 SINE ID 3 77 -6 4 863 807 146 34 34 chr9 36520350 36520499 -87555673 + B1_Mur3 SINE Alu 1 149 0 4 863 200 213 0 0 chr9 36520727 36520774 -87555398 + A-rich Low_complexity Low_complexity 1 47 0 4 863 354 245 35 105 chr9 36521537 36521651 -87554521 - PB1 SINE Alu -3 124 19 4 863 466 316 28 63 chr9 36521826 36521968 -87554204 + B1F2 SINE Alu 8 144 -5 4 863 330 115 0 0 chr9 36522628 36522680 -87553492 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 863 336 243 0 29 chr9 36522685 36522825 -87553347 + CT-rich Low_complexity Low_complexity 2 137 0 4 863 1352 62 0 22 chr9 36523080 36523260 -87552912 - B2_Mm2 SINE B2 -19 176 1 4 863 685 33 0 0 chr9 36523341 36523432 -87552740 + L1Md_T LINE L1 6492 6582 0 4 863 223 307 175 0 chr9 36524183 36524253 -87551919 + B1F2 SINE Alu 13 93 -56 5 863 296 193 65 54 chr9 36524342 36524435 -87551737 + B2_Mm2 SINE B2 85 178 -17 5 863 261 196 160 67 chr9 36524456 36524579 -87551593 + PB1 SINE Alu 1 147 -2 5 863 360 223 116 11 chr9 36524584 36524679 -87551493 + ID_B1 SINE B4 112 216 -8 5 863 234 0 0 0 chr9 36524750 36524776 -87551396 + (A)n Simple_repeat Simple_repeat 1 26 0 5 863 532 218 28 45 chr9 36525053 36525226 -87550946 + B1_Mur1 SINE Alu 2 141 -8 5 863 24 32 0 0 chr9 36525638 36525669 -87550503 + AT_rich Low_complexity Low_complexity 1 31 0 5 863 207 100 0 0 chr9 36525702 36525732 -87550440 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 5 863 284 293 12 24 chr9 36525769 36525853 -87550319 + GA-rich Low_complexity Low_complexity 2 84 0 5 863 332 308 0 13 chr9 36526210 36526289 -87549883 + ID4_ SINE ID 6 83 0 5 863 523 211 57 9 chr9 36526448 36526553 -87549619 - 7SK RNA RNA -94 237 128 6 863 584 280 117 30 chr9 36526621 36526886 -87549286 + MLT1A0 LTR MaLR 52 339 -26 6 863 216 0 0 0 chr9 36527439 36527463 -87548709 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 6 863 687 206 61 26 chr9 36527463 36527680 -87548492 + Lx4B LINE L1 6867 7050 -8 6 863 2005 123 44 3 chr9 36528379 36528697 -87547475 + Lx LINE L1 6319 6649 -5 6 863 336 24 0 0 chr9 36528701 36528742 -87547430 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 863 5634 102 64 21 chr9 36528743 36529630 -87546542 + ORR1A2-int LTR MaLR 1039 1963 0 6 863 2383 101 3 0 chr9 36529630 36529956 -87546216 + ORR1A2 LTR MaLR 1 327 0 6 863 704 218 71 44 chr9 36529994 36530176 -87545996 + B2_Mm2 SINE B2 2 188 -7 6 863 778 189 90 99 chr9 36530702 36530913 -87545259 + B3 SINE B2 2 210 -6 6 863 965 131 7 7 chr9 36531102 36531248 -87544924 + B1_Mus2 SINE Alu 1 146 -1 6 863 284 261 141 0 chr9 36531681 36531773 -87544399 + PB1D10 SINE Alu 13 117 0 7 863 568 184 110 32 chr9 36531908 36532089 -87544083 + B3 SINE B2 1 190 -5 7 863 197 231 188 25 chr9 36532388 36532468 -87543704 - MIR SINE MIR -86 176 84 7 863 1228 48 0 0 chr9 36532473 36532620 -87543552 + B1_Mm SINE Alu 1 147 0 7 863 31 44 0 0 chr9 36532754 36532799 -87543373 + AT_rich Low_complexity Low_complexity 1 45 0 7 863 298 231 116 42 chr9 36532824 36532919 -87543253 + PB1D10 SINE Alu 15 116 -1 7 863 302 282 13 0 chr9 36532945 36533023 -87543149 + ID4_ SINE ID 2 80 -3 7 863 285 173 0 71 chr9 36533257 36533313 -87542859 + RSINE1 SINE B4 93 144 -21 7 863 255 31 0 0 chr9 36533313 36533345 -87542827 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 7 863 233 319 14 0 chr9 36534732 36534743 -87541429 + B4 SINE B4 77 88 -204 7 863 415 304 18 0 chr9 36534743 36534855 -87541317 + PB1D10 SINE Alu 4 117 0 8 863 252 296 71 34 chr9 36535120 36535235 -87540937 + B1F SINE Alu 10 119 -1 8 863 238 255 0 0 chr9 36535390 36535441 -87540731 - ID2 SINE ID -32 51 1 8 863 889 35 9 0 chr9 36535602 36535716 -87540456 - B1_Mus1 SINE Alu 0 148 34 8 863 411 83 0 0 chr9 36535809 36535869 -87540303 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 863 380 291 64 0 chr9 36535869 36535979 -87540193 + ID_B1 SINE B4 100 216 -8 8 863 415 279 135 0 chr9 36536108 36536219 -87539953 + ID_B1 SINE B4 79 204 -20 8 863 284 308 0 130 chr9 36536120 36536258 -87539914 + B1F1 SINE Alu 13 132 -17 8 863 415 367 159 65 chr9 36536279 36536981 -87539191 + HAL1 LINE L1 147 914 -1593 8 863 332 250 0 13 chr9 36537066 36537143 -87539029 + ID4_ SINE ID 8 83 0 8 863 256 143 36 0 chr9 36537144 36537200 -87538972 + GA-rich Low_complexity Low_complexity 2 59 0 9 863 801 255 65 0 chr9 36537323 36537523 -87538649 + B3 SINE B2 2 214 -2 9 863 189 74 0 0 chr9 36537610 36537637 -87538535 + (A)n Simple_repeat Simple_repeat 1 27 0 9 863 411 310 35 0 chr9 36538012 36538125 -87538047 + PB1D10 SINE Alu 1 117 0 9 863 510 258 8 16 chr9 36538277 36538399 -87537773 + ID_B1 SINE B4 104 224 0 9 863 776 149 22 7 chr9 36538453 36538588 -87537584 - URR1B DNA MER1_type 0 225 89 9 863 267 103 0 0 chr9 36538648 36538687 -87537485 + (A)n Simple_repeat Simple_repeat 1 39 0 9 863 300 293 264 31 chr9 36539231 36539485 -87536687 - Tigger15a DNA TcMar -129 586 274 9 863 243 302 0 16 chr9 36540009 36540073 -87536099 - L2b LINE L2 0 3375 3313 9 863 236 347 81 10 chr9 36540011 36540110 -87536062 - MIRm SINE MIR 0 276 171 9 863 227 157 0 164 chr9 36540766 36540827 -87535345 - ID_B1 SINE B4 0 224 174 1 863 366 219 27 0 chr9 36540779 36540852 -87535320 - PB1D10 SINE Alu -6 111 37 1 863 1328 56 16 43 chr9 36540952 36541138 -87535034 + B2_Mm2 SINE B2 1 181 -14 1 863 220 350 136 21 chr9 36541226 36541290 -87534882 + ID_B1 SINE B4 69 205 -19 1 863 230 348 0 0 chr9 36541290 36541359 -87534813 + B1F SINE Alu 74 142 -7 1 863 265 289 62 50 chr9 36541415 36541495 -87534677 + RSINE1 SINE B4 57 137 -28 1 863 1047 62 27 40 chr9 36542381 36542531 -87533641 + B1_Mus1 SINE Alu 1 148 0 1 863 210 71 0 0 chr9 36542533 36542561 -87533611 + (A)n Simple_repeat Simple_repeat 1 28 0 1 863 348 301 144 42 chr9 36542680 36542895 -87533277 + MIR SINE MIR 3 239 -23 1 863 318 247 0 12 chr9 36543411 36543493 -87532679 + MER33 DNA MER1_type 18 98 -226 1 863 400 297 11 0 chr9 36543500 36543591 -87532581 + PB1D10 SINE Alu 1 92 -25 1 863 632 221 7 64 chr9 36543673 36543813 -87532359 + B1_Mur1 SINE Alu 1 132 -17 1 863 411 182 44 33 chr9 36544041 36544132 -87532040 - B4 SINE B4 -200 92 1 1 863 257 287 12 50 chr9 36544173 36544272 -87531900 + B4 SINE B4 2 95 -70 1 863 7837 126 34 22 chr9 36544282 36545643 -87530529 + Lx2 LINE L1 5614 6990 -7 1 863 537 295 7 14 chr9 36545820 36545961 -87530211 - ID_B1 SINE B4 -4 220 81 1 863 376 288 38 0 chr9 36546363 36546495 -87529677 + B1_Mur1 SINE Alu 1 137 -12 1 863 281 218 43 22 chr9 36546518 36546614 -87529558 - B1_Mur2 SINE Alu -1 148 53 1 863 620 245 25 62 chr9 36546671 36546832 -87529340 + B4 SINE B4 15 169 -123 1 863 205 176 19 38 chr9 36546869 36546922 -87529250 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 1 863 1464 208 129 14 chr9 36546989 36547354 -87528818 + MTD LTR MaLR 12 418 -1 1 863 241 362 64 0 chr9 36547544 36547638 -87528534 - PB1D10 SINE Alu -13 104 5 1 863 272 70 0 23 chr9 36547657 36547701 -87528471 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 863 630 143 0 0 chr9 36547751 36547856 -87528316 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 863 201 147 0 0 chr9 36547856 36547890 -87528282 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 1 863 329 283 119 20 chr9 36548077 36548279 -87527893 + HAL1 LINE L1 2009 2230 -277 1 863 408 237 241 15 chr9 36548313 36548446 -87527726 + RSINE1 SINE B4 3 165 0 1 863 324 290 38 13 chr9 36548542 36548641 -87527531 + ID4_ SINE ID 5 101 -51 1 863 537 287 15 30 chr9 36548865 36548998 -87527174 + ID_B1 SINE B4 94 224 0 1 863 1052 77 42 7 chr9 36549566 36549709 -87526463 + B1_Mus1 SINE Alu 1 148 0 1 863 228 135 0 0 chr9 36549709 36549746 -87526426 + (A)n Simple_repeat Simple_repeat 1 37 0 1 863 427 279 27 9 chr9 36549931 36550043 -87526129 - PB1D9 SINE Alu -6 114 1 1 863 304 312 200 0 chr9 36550043 36550054 -87526118 - B4A SINE B4 -69 221 74 1 863 390 232 0 68 chr9 36550142 36550230 -87525942 + ID4_ SINE ID 2 83 0 1 863 917 106 21 21 chr9 36550504 36550649 -87525523 - URR1A DNA MER1_type -5 221 77 1 863 1163 74 0 0 chr9 36550729 36550877 -87525295 + B1_Mus1 SINE Alu 1 148 0 1 863 186 209 0 0 chr9 36551312 36551355 -87524817 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 863 1187 99 60 6 chr9 36551393 36551576 -87524596 - B2_Mm2 SINE B2 -2 193 1 1 863 871 147 28 0 chr9 36551958 36552101 -87524071 + B1_Mur4 SINE Alu 2 148 -2 1 863 459 281 148 0 chr9 36552140 36552275 -87523897 + B3A SINE B2 3 157 -41 1 863 381 234 67 31 chr9 36552308 36552471 -87523701 + B3A SINE B2 2 215 -1 1 863 215 330 119 0 chr9 36552517 36552626 -87523546 + B3A SINE B2 55 176 -22 1 863 1391 63 21 16 chr9 36552650 36552842 -87523330 + B2_Mm2 SINE B2 2 194 -1 1 863 244 234 47 0 chr9 36552895 36553002 -87523170 + (TA)n Simple_repeat Simple_repeat 1 112 0 1 863 244 119 0 0 chr9 36553037 36553079 -87523093 + B2_Mm2 SINE B2 1 42 -153 1 863 1168 35 0 46 chr9 36553079 36553231 -87522941 + B1_Mus2 SINE Alu 3 147 0 1 863 294 98 0 0 chr9 36553231 36553282 -87522890 + (A)n Simple_repeat Simple_repeat 1 51 0 1 863 297 355 84 0 chr9 36553300 36553407 -87522765 - PB1D10 SINE Alu -1 116 1 1 863 879 233 19 33 chr9 36553467 36553680 -87522492 + B3 SINE B2 3 212 -4 1 863 381 247 40 30 chr9 36553794 36553894 -87522278 + B3A SINE B2 15 115 -83 1 863 1120 97 73 17 chr9 36554487 36554665 -87521507 + B2_Mm2 SINE B2 2 189 -6 1 863 660 192 8 32 chr9 36554746 36554870 -87521302 + B1_Mur1 SINE Alu 21 141 -8 1 863 391 320 19 0 chr9 36554907 36555010 -87521162 - PB1D10 SINE Alu -7 110 6 1 863 446 292 57 28 chr9 36555205 36555346 -87520826 + B3 SINE B2 70 214 -2 1 863 39 80 0 0 chr9 36555352 36555440 -87520732 + AT_rich Low_complexity Low_complexity 1 88 0 1 863 283 241 58 35 chr9 36555759 36555845 -87520327 - RSINE1 SINE B4 0 165 78 1 863 220 250 0 20 chr9 36555957 36556006 -87520166 - RSINE1 SINE B4 -115 50 3 1 863 3252 41 18 8 chr9 36556357 36556752 -87519420 + MTB LTR MaLR 1 399 -1 1 863 710 173 45 6 chr9 36556916 36557074 -87519098 + B3 SINE B2 29 210 -6 1 863 299 235 27 125 chr9 36557746 36557858 -87518314 - MER5A DNA MER1_type 0 189 89 1 863 263 229 49 0 chr9 36557915 36557976 -87518196 - PB1D10 SINE Alu -6 111 48 1 863 205 315 27 0 chr9 36557979 36558052 -87518120 - MER5A DNA MER1_type -114 75 1 1 863 529 88 0 12 chr9 36558281 36558362 -87517810 - B1_Mus2 SINE Alu 0 147 68 1 863 297 0 0 0 chr9 36558519 36558552 -87517620 + (TCC)n Simple_repeat Simple_repeat 2 34 0 1 863 400 215 386 0 chr9 36559226 36559384 -87516788 + ID_B1 SINE B4 2 220 -4 1 863 1366 98 5 10 chr9 36559420 36559616 -87516556 + B2_Mm2 SINE B2 1 195 0 1 863 1118 72 0 0 chr9 36559621 36559760 -87516412 + B1_Mus1 SINE Alu 1 139 -9 1 863 291 114 0 0 chr9 36559863 36559907 -87516265 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 863 651 222 0 0 chr9 36560089 36560206 -87515966 + B1_Mus1 SINE Alu 22 138 -10 1 863 763 241 3 16 chr9 36560272 36560468 -87515704 + B3A SINE B2 9 193 -2 1 863 277 349 56 137 chr9 36560470 36560605 -87515567 + MIR SINE MIR 30 150 -112 1 863 393 194 0 0 chr9 36560605 36560677 -87515495 - ID4 SINE ID -10 73 2 1 863 277 349 56 137 chr9 36560677 36560790 -87515382 + MIR SINE MIR 151 258 -4 1 863 221 306 0 53 chr9 36560915 36560991 -87515181 + BC1_Mm scRNA scRNA 3 74 -78 1 863 25 0 0 0 chr9 36561151 36561176 -87514996 + AT_rich Low_complexity Low_complexity 1 25 0 1 863 390 292 50 0 chr9 36561212 36561332 -87514840 - B1F SINE Alu -23 126 1 1 863 565 276 67 0 chr9 36561350 36561484 -87514688 - ID_B1 SINE B4 0 224 82 1 863 1261 91 39 22 chr9 36561783 36561962 -87514210 + B2_Mm2 SINE B2 2 183 -12 1 863 351 0 0 0 chr9 36561962 36562001 -87514171 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 863 437 331 24 0 chr9 36562016 36562140 -87514032 + RSINE1 SINE B4 3 129 -36 1 863 743 236 72 43 chr9 36562833 36563041 -87513131 + ID_B1 SINE B4 6 219 -5 1 863 648 207 0 0 chr9 36563137 36563854 -87512318 + GA-rich Low_complexity Low_complexity 1 717 0 1 863 609 215 0 0 chr9 36563867 36564463 -87511709 + GA-rich Low_complexity Low_complexity 1 596 0 1 863 312 155 137 27 chr9 36564466 36564539 -87511633 + PB1D9 SINE Alu 40 120 0 1 863 225 0 0 0 chr9 36564615 36564640 -87511532 + (A)n Simple_repeat Simple_repeat 1 25 0 1 863 326 345 0 0 chr9 36564688 36564801 -87511371 + PB1D10 SINE Alu 1 113 -4 1 863 831 137 227 11 chr9 36565512 36565697 -87510475 - URR1B DNA MER1_type 0 225 1 1 863 1838 208 98 35 chr9 36565740 36566199 -87509973 + RMER15 LTR ERVL 65 552 -23 1 863 266 217 17 0 chr9 36567824 36567884 -87508288 + ID_B1 SINE B4 164 224 0 1 863 378 307 134 106 chr9 36568062 36568354 -87507818 - MTE2a LTR MaLR -40 339 40 1 863 690 196 14 28 chr9 36568379 36568521 -87507651 + B1_Mur2 SINE Alu 9 148 -1 1 863 298 120 40 0 chr9 36568534 36568584 -87507588 - MTE2a LTR MaLR -327 52 1 1 863 1210 47 0 20 chr9 36568679 36568830 -87507342 + B1_Mus1 SINE Alu 1 148 0 1 107 200 304 29 14 chr9 36569027 36569097 -87507075 + MIRb SINE MIR 38 108 -160 1 864 2152 32 4 0 chr9 36569216 36569469 -87506703 + L1Md_A LINE L1 6329 6582 0 1 864 393 291 103 0 chr9 36569535 36569652 -87506520 - RSINE1 SINE B4 -21 144 16 1 864 395 303 20 27 chr9 36569668 36569817 -87506355 - B1F SINE Alu -1 148 1 1 864 38 0 0 0 chr9 36569923 36569961 -87506211 + AT_rich Low_complexity Low_complexity 1 38 0 1 864 1147 62 7 0 chr9 36569966 36570111 -87506061 - B1_Mus2 SINE Alu 0 147 2 1 864 368 222 183 48 chr9 36570146 36570250 -87505922 - B3A SINE B2 -74 119 2 1 864 753 176 20 53 chr9 36570268 36570418 -87505754 - B1_Mur1 SINE Alu 0 149 5 1 864 21 0 0 0 chr9 36570418 36570439 -87505733 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 241 296 92 0 chr9 36571417 36571515 -87504657 + PB1D10 SINE Alu 6 112 -5 1 864 898 254 118 6 chr9 36571513 36571826 -87504346 - MTE2b LTR MaLR -6 373 26 1 864 838 161 0 0 chr9 36571886 36572016 -87504156 + B3 SINE B2 1 130 -86 1 864 387 0 0 0 chr9 36572020 36572063 -87504109 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1 864 34 0 0 0 chr9 36572285 36572319 -87503853 + AT_rich Low_complexity Low_complexity 1 34 0 2 864 1305 96 16 5 chr9 36572352 36572540 -87503632 + B2_Mm2 SINE B2 2 191 -4 2 864 404 247 196 0 chr9 36572970 36573067 -87503105 + B1_Mm SINE Alu 1 116 -31 2 864 228 268 73 17 chr9 36573138 36573222 -87502950 + B1F1 SINE Alu 16 112 -5 2 864 229 329 0 24 chr9 36573234 36573318 -87502854 + ID2 SINE ID 2 83 0 2 864 363 304 43 14 chr9 36573539 36573679 -87502493 + B1F SINE Alu 1 144 -5 2 864 22 35 0 0 chr9 36574083 36574112 -87502060 + AT_rich Low_complexity Low_complexity 1 29 0 2 864 240 185 14 97 chr9 36576487 36576559 -87499613 - MLT1A LTR MaLR -46 328 263 2 864 27 0 0 0 chr9 36576615 36576642 -87499530 + AT_rich Low_complexity Low_complexity 1 27 0 2 864 407 227 45 90 chr9 36576671 36576826 -87499346 + RSINE1 SINE B4 16 163 -2 2 864 1322 98 0 35 chr9 36576846 36577048 -87499124 + B2_Mm2 SINE B2 1 195 0 2 864 243 0 0 0 chr9 36577068 36577095 -87499077 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2 864 225 200 20 0 chr9 36577159 36577209 -87498963 + B1_Mur2 SINE Alu 92 142 -7 2 864 232 320 39 0 chr9 36577218 36577296 -87498876 + ID4_ SINE ID 2 82 -1 2 864 648 200 0 0 chr9 36577321 36577466 -87498706 + (TA)n Simple_repeat Simple_repeat 1 145 0 2 864 599 129 194 0 chr9 36577730 36577869 -87498303 + B2_Mm2 SINE B2 5 170 -25 2 864 932 23 7 52 chr9 36577873 36578008 -87498164 + B1_Mm SINE Alu 19 147 0 2 864 24 42 0 20 chr9 36578008 36578020 -87498152 + AT_rich Low_complexity Low_complexity 1 12 0 2 864 1349 92 0 5 chr9 36578020 36578205 -87497967 - B2_Mm2 SINE B2 -10 185 2 2 864 24 42 0 20 chr9 36578205 36578241 -87497931 + AT_rich Low_complexity Low_complexity 1 36 0 2 864 429 215 26 70 chr9 36578265 36578380 -87497792 + B1F2 SINE Alu 40 149 0 2 864 287 254 36 0 chr9 36578626 36578720 -87497452 + L1M1 LINE L1 5695 5792 -499 2 864 2279 136 54 3 chr9 36578720 36579112 -87497060 + MTC LTR MaLR 1 412 -9 2 864 288 227 21 93 chr9 36579120 36579154 -87497018 + L1M1 LINE L1 5787 5816 -484 2 864 505 69 14 0 chr9 36579154 36579226 -87496946 + L1_Mus2 LINE L1 6494 6566 0 2 864 288 227 21 93 chr9 36579226 36579288 -87496884 + L1M1 LINE L1 5817 5876 -424 2 864 789 132 22 8 chr9 36579314 36579455 -87496717 - B2_Mm2 SINE B2 -58 158 2 2 864 476 272 90 24 chr9 36579544 36579710 -87496462 + B3A SINE B2 5 181 -17 2 864 23 33 0 0 chr9 36579826 36579856 -87496316 + AT_rich Low_complexity Low_complexity 1 30 0 2 864 1034 97 0 0 chr9 36579973 36580107 -87496065 + B1_Mus2 SINE Alu 1 134 -13 2 864 218 56 0 27 chr9 36580107 36580144 -87496028 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 864 478 204 70 20 chr9 36580160 36580260 -87495912 - RSINE1 SINE B4 -18 147 43 2 864 1589 37 16 0 chr9 36580261 36580450 -87495722 - B2_Mm1a SINE B2 0 193 2 2 864 21 89 0 0 chr9 36580464 36580520 -87495652 + AT_rich Low_complexity Low_complexity 1 56 0 2 864 970 172 194 0 chr9 36580628 36580808 -87495364 + B3 SINE B2 2 216 0 2 864 270 324 79 74 chr9 36580904 36581094 -87495078 - ORR1E LTR MaLR -166 193 3 2 864 1171 62 0 7 chr9 36581657 36581804 -87494368 - B1_Mus2 SINE Alu -1 146 1 2 864 25 0 0 0 chr9 36581810 36581835 -87494337 + AT_rich Low_complexity Low_complexity 1 25 0 2 864 616 221 53 0 chr9 36581954 36582085 -87494087 - B1_Mus1 SINE Alu -9 139 2 2 864 552 302 22 44 chr9 36582169 36582349 -87493823 - B3A SINE B2 -3 195 20 2 864 488 244 86 8 chr9 36582369 36582497 -87493675 - B1_Mur1 SINE Alu -6 143 6 2 864 478 277 37 30 chr9 36582624 36582758 -87493414 - B1F2 SINE Alu -14 135 1 2 864 1201 55 0 0 chr9 36583182 36583328 -87492844 + B1_Mm SINE Alu 2 147 0 2 864 237 308 26 0 chr9 36583753 36583831 -87492341 + ID4 SINE ID 3 82 -1 2 864 313 258 216 0 chr9 36583901 36583998 -87492174 + B3 SINE B2 40 157 -41 2 864 339 65 0 0 chr9 36584005 36584051 -87492121 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 864 438 20 0 0 chr9 36584051 36584101 -87492071 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 864 984 72 72 7 chr9 36584104 36584257 -87491915 + B2_Mm2 SINE B2 3 165 -30 2 864 322 295 35 9 chr9 36584276 36584389 -87491783 - PB1D7 SINE Alu 0 120 5 2 864 368 255 51 0 chr9 36584588 36584686 -87491486 + B1_Mus1 SINE Alu 26 128 -20 2 864 407 254 64 0 chr9 36584835 36584945 -87491227 + RSINE1 SINE B4 4 120 -45 2 864 24 32 0 0 chr9 36585029 36585060 -87491112 + AT_rich Low_complexity Low_complexity 1 31 0 2 864 1096 75 0 14 chr9 36585062 36585210 -87490962 + B1_Mus1 SINE Alu 3 148 0 2 864 342 229 48 0 chr9 36585212 36585295 -87490877 + B4 SINE B4 81 167 -125 2 864 564 98 14 33 chr9 36585225 36585330 -87490842 + B1_Mus1 SINE Alu 11 115 -2 2 864 298 350 14 49 chr9 36585356 36585500 -87490672 + RSINE1 SINE B4 7 145 -20 2 864 22 0 0 0 chr9 36585662 36585684 -87490488 + AT_rich Low_complexity Low_complexity 1 22 0 2 864 455 306 0 0 chr9 36585775 36585886 -87490286 - ID_B1 SINE B4 -29 195 85 2 864 399 188 11 23 chr9 36585955 36586042 -87490130 - B3 SINE B2 -129 87 2 2 864 1201 74 0 0 chr9 36586245 36586393 -87489779 - B1_Mus1 SINE Alu 0 148 1 2 864 252 0 0 0 chr9 36586674 36586702 -87489470 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 864 1073 51 63 6 chr9 36588168 36588327 -87487845 - B2_Mm2 SINE B2 -27 168 1 2 864 612 263 73 29 chr9 36588375 36588579 -87487593 - B3 SINE B2 -3 213 1 2 864 401 236 34 0 chr9 36588705 36588794 -87487378 - B1F SINE Alu -41 108 17 2 864 717 107 194 16 chr9 36588800 36588924 -87487248 + B1_Mm SINE Alu 2 147 0 2 864 243 88 0 0 chr9 36588924 36588958 -87487214 + (A)n Simple_repeat Simple_repeat 1 34 0 2 864 30 49 0 16 chr9 36589230 36589266 -87486906 + AT_rich Low_complexity Low_complexity 1 36 0 2 864 1268 91 45 0 chr9 36589266 36589442 -87486730 + B2_Mm2 SINE B2 2 185 -10 2 864 30 49 0 16 chr9 36589442 36589467 -87486705 + AT_rich Low_complexity Low_complexity 1 25 0 2 864 2047 143 68 16 chr9 36589483 36589866 -87486306 + MTC LTR MaLR 19 421 0 2 864 207 0 0 0 chr9 36590006 36590029 -87486143 + (A)n Simple_repeat Simple_repeat 1 23 0 2 864 465 194 239 9 chr9 36590578 36590687 -87485485 + B1_Mur1 SINE Alu 10 143 -6 2 864 486 74 12 12 chr9 36590820 36590902 -87485270 + L1_Mus2 LINE L1 6485 6566 0 2 864 374 211 192 54 chr9 36590919 36591026 -87485146 + B1_Mur4 SINE Alu 2 120 -30 2 864 441 0 0 0 chr9 36591026 36591075 -87485097 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 864 374 211 192 54 chr9 36591075 36591097 -87485075 + B1_Mur4 SINE Alu 121 149 -1 2 864 338 292 10 40 chr9 36591160 36591260 -87484912 - PB1D10 SINE Alu -1 116 20 2 864 365 282 109 0 chr9 36591300 36591410 -87484762 + B1F1 SINE Alu 1 122 -27 2 864 399 241 68 17 chr9 36591425 36591543 -87484629 + ID_B1 SINE B4 98 221 -3 2 864 23 54 0 0 chr9 36591545 36591582 -87484590 + AT_rich Low_complexity Low_complexity 1 37 0 2 864 391 282 8 25 chr9 36591617 36591737 -87484435 + ID_B1 SINE B4 82 199 -25 2 864 213 55 26 53 chr9 36591708 36591746 -87484426 + PB1D10 SINE Alu 62 98 -19 2 864 921 233 10 10 chr9 36592447 36592651 -87483521 - B3 SINE B2 -9 207 4 2 864 259 307 226 22 chr9 36592747 36592977 -87483195 + B4A SINE B4 6 282 -10 2 864 232 136 53 120 chr9 36594173 36594187 -87481985 + MT2B LTR ERVL 152 221 -380 2 864 355 164 33 0 chr9 36594187 36594248 -87481924 + B1_Mur4 SINE Alu 3 65 -85 2 864 1301 20 0 0 chr9 36594263 36594410 -87481762 - B1_Mm SINE Alu 0 147 1 2 864 27 0 0 0 chr9 36594443 36594470 -87481702 + AT_rich Low_complexity Low_complexity 1 27 0 2 864 611 145 7 155 chr9 36594809 36594964 -87481208 - B1_Mur4 SINE Alu -1 149 18 2 864 237 202 15 261 chr9 36594845 36594979 -87481193 - MT2B LTR ERVL -337 264 164 2 864 566 179 80 0 chr9 36594982 36595094 -87481078 - ID_B1 SINE B4 0 224 104 2 864 587 315 5 30 chr9 36595098 36595116 -87481056 - B3A SINE B2 0 198 184 2 864 380 20 0 20 chr9 36595116 36595166 -87481006 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 864 587 315 5 30 chr9 36595166 36595350 -87480822 - B3A SINE B2 -15 183 1 2 864 207 204 0 0 chr9 36595354 36595398 -87480774 + T-rich Low_complexity Low_complexity 1 44 0 2 864 642 221 15 8 chr9 36595403 36595535 -87480637 - B1_Mur1 SINE Alu -13 136 4 2 864 479 274 9 0 chr9 36595999 36596112 -87480060 - PB1D7 SINE Alu -4 116 3 2 864 490 176 211 9 chr9 36596144 36596253 -87479919 - B1_Mus1 SINE Alu -7 141 11 2 864 376 322 59 46 chr9 36596289 36596442 -87479730 + RSINE1 SINE B4 2 156 -9 2 864 786 239 73 19 chr9 36596460 36596665 -87479507 - B3 SINE B2 0 216 1 2 864 180 77 0 0 chr9 36596835 36596861 -87479311 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 2 864 441 272 37 74 chr9 36596877 36597012 -87479160 - RSINE1 SINE B4 -28 137 8 2 864 998 93 0 35 chr9 36597043 36597187 -87478985 - B1_Mus1 SINE Alu -9 139 1 2 864 204 67 0 0 chr9 36597228 36597258 -87478914 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 864 1131 45 64 0 chr9 36597543 36597699 -87478473 + B2_Mm2 SINE B2 1 166 -29 3 864 468 62 0 0 chr9 36597700 36597764 -87478408 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 864 328 284 21 21 chr9 36598061 36598158 -87478014 - PB1D10 SINE Alu -11 106 10 3 864 487 273 32 16 chr9 36598303 36598426 -87477746 - RSINE1 SINE B4 -38 127 3 3 864 256 239 100 22 chr9 36598436 36598526 -87477646 + MT2B2 LTR ERVL 167 263 -321 3 864 296 259 37 0 chr9 36598462 36598543 -87477629 + B1F SINE Alu 43 126 -23 3 864 360 183 113 0 chr9 36598621 36598692 -87477480 + ID4_ SINE ID 3 81 -2 3 864 405 0 0 0 chr9 36598717 36598762 -87477410 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 864 189 0 0 0 chr9 36598837 36598858 -87477314 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 864 263 370 93 0 chr9 36598858 36598966 -87477206 + PB1D7 SINE Alu 2 119 -1 3 864 899 119 34 27 chr9 36598967 36599114 -87477058 + B1_Mur4 SINE Alu 1 148 -2 3 864 977 58 15 0 chr9 36599381 36599518 -87476654 - B1_Mus2 SINE Alu 0 147 9 3 864 568 190 34 47 chr9 36599681 36599830 -87476342 - ID_B1 SINE B4 0 224 78 3 864 420 284 20 0 chr9 36599921 36600023 -87476149 + ID_B1 SINE B4 88 191 -33 3 864 408 248 17 92 chr9 36600023 36600041 -87476131 + PB1D10 SINE Alu 7 117 0 3 864 489 281 164 45 chr9 36600161 36600381 -87475791 + B4A SINE B4 29 274 -18 3 864 312 283 73 36 chr9 36600545 36600655 -87475517 + PB1D7 SINE Alu 7 120 0 3 864 675 235 67 50 chr9 36601328 36601507 -87474665 + B3A SINE B2 1 182 -16 3 864 247 257 79 26 chr9 36601529 36601605 -87474567 + B1F1 SINE Alu 24 103 -46 3 864 234 308 115 0 chr9 36601605 36601632 -87474540 + B4 SINE B4 109 223 -69 3 864 226 339 0 0 chr9 36601709 36601768 -87474404 - ID4_ SINE ID -23 60 2 3 864 310 268 61 20 chr9 36601981 36602080 -87474092 + ID_B1 SINE B4 121 223 -1 3 864 591 158 0 0 chr9 36602627 36602722 -87473450 - B1_Mus2 SINE Alu -6 141 47 3 864 242 213 48 32 chr9 36602670 36602733 -87473439 - RLTR25A LTR ERVK -531 572 509 3 864 568 174 389 0 chr9 36602759 36602908 -87473264 - B3 SINE B2 -9 207 1 3 864 1022 68 30 0 chr9 36602941 36603073 -87473099 + B1_Mus1 SINE Alu 1 136 -12 3 864 489 304 7 13 chr9 36605276 36605426 -87470746 + B1F1 SINE Alu 1 149 0 3 864 357 282 87 0 chr9 36605467 36605570 -87470602 + ID_B1 SINE B4 42 153 -71 3 864 633 132 114 0 chr9 36605914 36606028 -87470144 - B1_Mus1 SINE Alu -12 136 10 3 864 293 268 210 8 chr9 36605936 36606060 -87470112 - B4 SINE B4 -88 204 56 3 864 1153 203 282 0 chr9 36606041 36606371 -87469801 - MT2A LTR ERVL -17 516 94 3 864 1135 56 28 0 chr9 36606463 36606607 -87469565 + B1_Mus1 SINE Alu 1 148 0 3 864 373 250 14 90 chr9 36606643 36606662 -87469510 - MT2B LTR ERVL -327 274 222 3 864 503 200 10 0 chr9 36606662 36606762 -87469410 - B1_Mus1 SINE Alu -46 102 2 3 864 373 250 14 90 chr9 36606762 36606788 -87469384 - MT2B LTR ERVL -327 221 141 3 864 262 256 0 0 chr9 36606885 36606954 -87469218 - ID4 SINE ID -14 69 1 3 864 1174 48 7 0 chr9 36607015 36607161 -87469011 + B1_Mm SINE Alu 1 147 0 3 864 1513 226 85 16 chr9 36607613 36608000 -87468172 - MTD LTR MaLR -5 414 1 3 864 336 326 0 10 chr9 36608178 36608274 -87467898 + PB1D10 SINE Alu 13 107 -10 3 864 509 219 9 0 chr9 36608335 36608440 -87467732 + B1_Mur1 SINE Alu 42 147 -2 3 864 355 248 182 9 chr9 36608658 36608768 -87467404 + B1F SINE Alu 20 148 -1 3 864 639 95 129 5 chr9 36608807 36608940 -87467232 - B1_Mur4 SINE Alu 0 150 5 3 864 312 203 111 146 chr9 36608812 36608956 -87467216 - B4 SINE B4 -71 221 83 3 864 1142 112 0 6 chr9 36609187 36609366 -87466806 + (GAA)n Simple_repeat Simple_repeat 2 179 0 3 864 180 152 0 0 chr9 36609368 36609401 -87466771 + GA-rich Low_complexity Low_complexity 3 35 0 3 864 273 294 12 12 chr9 36609514 36609600 -87466572 + PB1 SINE Alu 24 109 -18 3 864 835 131 80 0 chr9 36609638 36609775 -87466397 + B1_Mus1 SINE Alu 1 148 0 3 864 1026 130 0 0 chr9 36609783 36609929 -87466243 + B1_Mur4 SINE Alu 5 150 0 3 864 278 295 0 0 chr9 36609958 36610036 -87466136 + ID4 SINE ID 2 79 -4 3 864 1023 137 12 0 chr9 36610054 36610222 -87465950 + RMER19B LTR ERVK 1 170 -732 3 864 3099 51 0 0 chr9 36610256 36610627 -87465545 + L1_Mus1 LINE L1 6197 6567 0 3 864 634 202 0 24 chr9 36610659 36610786 -87465386 - B1_Mur2 SINE Alu 0 149 26 3 864 252 0 0 0 chr9 36610870 36610898 -87465274 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 864 486 256 14 42 chr9 36611120 36611263 -87464909 + ID_B1 SINE B4 82 220 -4 3 864 284 143 18 0 chr9 36611336 36611392 -87464780 + GA-rich Low_complexity Low_complexity 5 61 0 3 864 1311 116 0 5 chr9 36611417 36611608 -87464564 + B2_Mm2 SINE B2 5 194 -1 3 864 422 206 72 0 chr9 36611716 36611813 -87464359 - B1F1 SINE Alu -18 131 28 3 864 293 120 20 20 chr9 36612797 36612848 -87463324 + RMER10A LTR ERVL 1 51 -391 3 864 451 165 0 0 chr9 36612842 36612921 -87463251 - RMER10A LTR ERVL -329 113 35 3 864 258 182 0 0 chr9 36612923 36612989 -87463183 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 864 1201 211 41 19 chr9 36613189 36613507 -87462665 + RMER10A LTR ERVL 118 442 0 3 864 443 234 0 18 chr9 36613513 36613626 -87462546 + L1MA4A LINE L1 5497 5607 -693 3 864 686 250 29 1 chr9 36613626 36613805 -87462367 + ID_B1 SINE B4 2 194 -98 3 864 470 17 0 17 chr9 36613951 36614011 -87462161 + (TATG)n Simple_repeat Simple_repeat 4 62 0 3 864 700 187 54 16 chr9 36614011 36614239 -87461933 - RLTR28 LTR ERVL -230 251 1 3 864 551 261 122 26 chr9 36614270 36614589 -87461583 + L1MA4A LINE L1 5570 5908 -1788 3 864 324 178 0 0 chr9 36614958 36615031 -87461141 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 864 243 250 16 32 chr9 36615039 36615101 -87461071 - ID4_ SINE ID -16 67 7 3 864 422 293 21 14 chr9 36615121 36615263 -87460909 - B1F1 SINE Alu -1 148 6 3 864 212 196 21 21 chr9 36615277 36615309 -87460863 + polypyrimidine Low_complexity Low_complexity 17 49 0 3 864 1050 112 6 11 chr9 36615309 36615489 -87460683 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 864 212 196 21 21 chr9 36615489 36615503 -87460669 + polypyrimidine Low_complexity Low_complexity 3 16 0 3 864 634 232 22 10 chr9 36615505 36615656 -87460516 - ID_B1 SINE B4 -47 245 92 3 864 401 258 67 0 chr9 36615788 36615908 -87460264 - MER5A1 DNA MER1_type -2 164 37 3 864 205 216 0 0 chr9 36616282 36616319 -87459853 + A-rich Low_complexity Low_complexity 5 41 0 3 864 205 191 0 0 chr9 36616351 36616393 -87459779 + A-rich Low_complexity Low_complexity 1 42 0 3 864 240 35 0 0 chr9 36616567 36616596 -87459576 + (TGG)n Simple_repeat Simple_repeat 3 31 0 3 864 426 217 21 21 chr9 36616596 36616690 -87459482 + B1_Mur2 SINE Alu 23 116 -33 3 864 1466 63 5 26 chr9 36616781 36616976 -87459196 - B2_Mm1t SINE B2 0 193 3 3 864 225 65 0 0 chr9 36617029 36617060 -87459112 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 864 324 0 0 0 chr9 36617088 36617124 -87459048 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 864 1375 187 61 64 chr9 36617550 36617910 -87458262 + ORR1C2 LTR MaLR 26 384 0 3 864 535 254 60 0 chr9 36618194 36618328 -87457844 - B1F SINE Alu -6 143 2 3 864 501 17 0 0 chr9 36618528 36618586 -87457586 + (TTCTG)n Simple_repeat Simple_repeat 5 62 0 3 864 356 211 63 0 chr9 36618586 36618681 -87457491 - PB1D7 SINE Alu -12 108 8 3 864 1218 54 0 0 chr9 36618960 36619107 -87457065 + B1_Mus1 SINE Alu 2 148 0 3 864 519 60 0 0 chr9 36619115 36619182 -87456990 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 3 864 651 291 74 12 chr9 36619229 36619486 -87456686 - MER21B LTR ERV1 -125 738 466 3 864 294 250 0 0 chr9 36619624 36619688 -87456484 + ID_B1 SINE B4 127 190 -34 3 864 528 30 0 0 chr9 36619690 36619756 -87456416 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 864 474 255 27 34 chr9 36619791 36619937 -87456235 + B1F SINE Alu 5 149 0 3 864 374 316 182 11 chr9 36619975 36620244 -87455928 - MER21B LTR ERV1 -427 436 122 3 864 431 89 32 11 chr9 36620302 36620386 -87455786 - B2_Mm2 SINE B2 0 193 103 3 864 194 0 39 0 chr9 36620388 36620414 -87455758 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 3 864 1490 38 49 0 chr9 36620444 36620628 -87455544 - B2_Mm1a SINE B2 0 193 1 3 864 760 229 14 0 chr9 36621502 36621642 -87454530 - B1_Mur2 SINE Alu -7 142 1 3 864 198 0 0 0 chr9 36621705 36621727 -87454445 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 864 904 210 28 6 chr9 36621766 36621943 -87454229 - B3A SINE B2 -17 181 1 3 864 263 344 10 31 chr9 36622009 36622105 -87454067 - MER21B LTR ERV1 -768 95 2 3 864 851 214 9 95 chr9 36622204 36622369 -87453803 - B3 SINE B2 -13 203 40 3 864 351 0 0 0 chr9 36622369 36622408 -87453764 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 864 851 214 9 95 chr9 36622408 36622423 -87453749 - B3 SINE B2 -177 39 39 3 864 1177 48 14 0 chr9 36622423 36622569 -87453603 - B1_Mus1 SINE Alu 0 148 1 3 864 851 214 9 95 chr9 36622569 36622609 -87453563 - B3 SINE B2 -177 39 1 3 864 523 203 16 41 chr9 36622900 36623023 -87453149 + B1F SINE Alu 30 149 0 3 864 224 341 0 11 chr9 36623327 36623419 -87452753 + CT-rich Low_complexity Low_complexity 3 93 0 3 864 336 320 20 10 chr9 36623483 36623581 -87452591 - ID_B1 SINE B4 -26 198 100 3 864 23 0 0 0 chr9 36623641 36623664 -87452508 + AT_rich Low_complexity Low_complexity 1 23 0 4 864 363 194 215 8 chr9 36623742 36623872 -87452300 - RLTR17 LTR ERVK -2 690 534 4 864 558 226 62 93 chr9 36623874 36623928 -87452244 - RSINE1 SINE B4 0 165 125 4 864 4439 88 9 0 chr9 36623928 36624507 -87451665 - MT2B2 LTR ERVL 0 584 1 4 864 558 226 62 93 chr9 36624507 36624613 -87451559 - RSINE1 SINE B4 -41 124 10 4 864 309 217 14 0 chr9 36624646 36624715 -87451457 - PB1D10 SINE Alu -37 80 11 4 864 261 262 11 56 chr9 36624715 36624733 -87451439 - ID_B1 SINE B4 -62 160 78 4 864 31 26 0 0 chr9 36624866 36624904 -87451268 + AT_rich Low_complexity Low_complexity 1 38 0 4 864 237 277 0 67 chr9 36625236 36625273 -87450899 - BC1_Mm scRNA scRNA -24 128 99 4 864 252 0 0 0 chr9 36625273 36625301 -87450871 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 864 297 258 0 24 chr9 36625301 36625383 -87450789 - ID4 SINE ID -54 98 17 4 864 296 339 0 26 chr9 36625508 36625623 -87450549 - PB1D10 SINE Alu -3 114 3 4 864 725 239 152 33 chr9 36625633 36625845 -87450327 - L1MB7 LINE L1 -237 5947 5727 4 864 486 252 66 15 chr9 36625845 36625982 -87450190 - B1F SINE Alu -5 144 1 4 864 725 239 152 33 chr9 36625982 36626072 -87450100 - L1MB7 LINE L1 -458 5726 5609 4 864 438 90 0 0 chr9 36626100 36626167 -87450005 - B1_Mus2 SINE Alu 0 147 81 4 864 1214 199 193 13 chr9 36626166 36626477 -87449695 - MTD LTR MaLR -41 378 12 4 864 648 291 5 52 chr9 36627112 36627304 -87448868 + B3A SINE B2 16 198 0 4 864 491 269 20 54 chr9 36627324 36627473 -87448699 + RSINE1 SINE B4 2 145 -20 4 864 241 265 0 0 chr9 36627709 36627758 -87448414 - ID4 SINE ID -20 63 15 4 864 393 206 14 0 chr9 36627851 36627924 -87448248 - RSINE1 SINE B4 -77 88 15 4 864 529 211 47 58 chr9 36627951 36628122 -87448050 + L1MA5 LINE L1 6132 6300 0 4 864 272 159 0 42 chr9 36628152 36628188 -87447984 + T-rich Low_complexity Low_complexity 34 69 0 4 864 942 106 21 0 chr9 36628188 36628330 -87447842 - B1_Mus2 SINE Alu 0 147 3 4 864 272 159 0 42 chr9 36628330 36628365 -87447807 + T-rich Low_complexity Low_complexity 1 33 0 4 864 447 196 113 0 chr9 36628365 36628462 -87447710 - B1_Mur4 SINE Alu -40 110 3 4 864 507 224 65 0 chr9 36628468 36628575 -87447597 - ID_B1 SINE B4 -1 223 110 4 864 1557 43 0 21 chr9 36628626 36628818 -87447354 - B2_Mm1a SINE B2 -5 188 1 4 864 210 91 67 22 chr9 36628878 36628923 -87447249 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 864 410 184 0 73 chr9 36629912 36629994 -87446178 - ID2 SINE ID -3 80 5 4 864 231 235 132 0 chr9 36630202 36630270 -87445902 - PB1D10 SINE Alu -17 100 24 4 864 720 209 62 43 chr9 36630336 36630546 -87445626 - B3 SINE B2 0 216 3 4 864 1614 164 134 15 chr9 36630572 36630900 -87445272 + ORR1B2 LTR MaLR 1 367 0 4 864 235 216 0 38 chr9 36630904 36630957 -87445215 - L1MD LINE L1 -634 5725 5675 4 864 445 333 14 0 chr9 36631035 36631173 -87444999 + ID_B1 SINE B4 73 212 -12 4 864 398 294 82 28 chr9 36631187 36631225 -87444947 - B2_Mm2 SINE B2 -1 194 159 4 864 441 0 0 0 chr9 36631225 36631274 -87444898 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 864 508 254 142 15 chr9 36631274 36631417 -87444755 - B3A SINE B2 -38 160 3 4 864 1312 47 63 23 chr9 36631447 36631622 -87444550 + B2_Mm2 SINE B2 5 186 -9 4 864 402 171 812 0 chr9 36631624 36631741 -87444431 - B3 SINE B2 -4 212 1 4 864 1805 178 67 3 chr9 36631774 36631880 -87444292 - ORR1C2 LTR MaLR 0 384 279 4 864 204 40 0 0 chr9 36631880 36631905 -87444267 + (CAT)n Simple_repeat Simple_repeat 3 27 0 4 864 1805 178 67 3 chr9 36631905 36632159 -87444013 - ORR1C2 LTR MaLR -106 278 3 4 864 737 280 0 0 chr9 36632160 36632328 -87443844 + B3A SINE B2 3 170 -28 4 864 975 224 43 10 chr9 36632330 36632537 -87443635 + B3 SINE B2 3 216 0 4 864 486 0 0 0 chr9 36632555 36632609 -87443563 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 864 320 274 17 42 chr9 36632687 36632805 -87443367 + ID_B1 SINE B4 110 224 0 4 864 365 302 0 0 chr9 36632969 36633055 -87443117 - RSINE1 SINE B4 -66 99 14 4 864 448 246 212 23 chr9 36633082 36633251 -87442921 + ID_B1 SINE B4 17 217 -7 4 864 303 257 40 0 chr9 36633346 36633420 -87442752 - ID4_ SINE ID -2 81 5 4 864 587 216 0 23 chr9 36633883 36634011 -87442161 + B1_Mus1 SINE Alu 3 127 -21 4 864 396 317 8 55 chr9 36634102 36634229 -87441943 + B1F SINE Alu 29 149 0 4 864 612 0 0 0 chr9 36634920 36634988 -87441184 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 864 296 237 2 43 chr9 36635019 36635097 -87441075 + RSINE1 SINE B4 1 76 -216 4 864 450 0 0 0 chr9 36635097 36635147 -87441025 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 864 644 264 0 33 chr9 36635150 36635334 -87440838 - MER31A LTR ERV1 -9 476 299 4 864 395 53 35 0 chr9 36635350 36635407 -87440765 + (TGGA)n Simple_repeat Simple_repeat 2 60 0 4 864 755 284 22 0 chr9 36635415 36635647 -87440525 - MER31A LTR ERV1 -248 237 1 4 864 531 0 0 0 chr9 36636282 36636341 -87439831 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 4 864 257 287 78 19 chr9 36636406 36636509 -87439663 - PB1D10 SINE Alu 0 117 9 4 864 417 304 32 63 chr9 36636445 36636603 -87439569 - ID_B1 SINE B4 -71 153 1 4 864 268 293 0 35 chr9 36636603 36636676 -87439496 + B4A SINE B4 77 146 -146 4 864 576 225 7 40 chr9 36636620 36636768 -87439404 + B1F1 SINE Alu 6 148 -1 4 864 203 254 0 0 chr9 36636769 36636828 -87439344 + A-rich Low_complexity Low_complexity 3 61 0 4 864 327 154 0 0 chr9 36636920 36636985 -87439187 + (CTG)n Simple_repeat Simple_repeat 1 65 0 4 864 325 287 143 30 chr9 36637000 36637133 -87439039 - ID_B1 SINE B4 -1 223 76 4 864 587 310 80 22 chr9 36637397 36637671 -87438501 - RMER15 LTR ERVL -13 562 273 4 864 276 225 65 104 chr9 36637681 36637835 -87438337 - RMER15 LTR ERVL -427 148 1 4 864 363 282 68 0 chr9 36637835 36637937 -87438235 + B1F SINE Alu 29 137 -12 4 864 278 180 16 0 chr9 36637939 36638000 -87438172 + GA-rich Low_complexity Low_complexity 4 65 0 4 864 405 233 112 72 chr9 36638034 36638159 -87438013 + B1F2 SINE Alu 11 140 -9 4 864 234 0 0 0 chr9 36638161 36638187 -87437985 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 864 300 287 0 105 chr9 36638404 36638509 -87437663 - PB1D10 SINE Alu -23 94 1 4 864 257 279 26 51 chr9 36638636 36638753 -87437419 - B3 SINE B2 -2 214 101 4 864 238 220 85 0 chr9 36638742 36638801 -87437371 - B2_Mm2 SINE B2 -127 68 5 4 864 420 260 41 10 chr9 36638902 36638999 -87437173 + ID_B1 SINE B4 86 185 -39 4 864 284 264 79 8 chr9 36639119 36639245 -87436927 - MIR SINE MIR -50 212 78 4 864 414 245 73 53 chr9 36639290 36639441 -87436731 - RSINE1 SINE B4 -1 164 11 4 864 213 121 0 0 chr9 36639706 36639739 -87436433 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 4 864 486 0 0 0 chr9 36640785 36640839 -87435333 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 864 282 284 87 54 chr9 36642680 36642829 -87433343 - RSINE1 SINE B4 0 165 12 4 864 546 243 137 11 chr9 36642930 36643105 -87433067 - B3A SINE B2 -1 197 1 4 864 366 293 59 15 chr9 36643169 36643304 -87432868 - ID_B1 SINE B4 -10 214 74 4 864 648 217 0 0 chr9 36643614 36643734 -87432438 - B1_Mur1 SINE Alu -28 121 2 4 864 291 272 0 109 chr9 36643621 36643749 -87432423 - MT2B LTR ERVL -337 264 151 4 864 1018 189 63 19 chr9 36643831 36644036 -87432136 - B3 SINE B2 -2 214 1 4 864 21 0 0 0 chr9 36644036 36644057 -87432115 + AT_rich Low_complexity Low_complexity 1 21 0 4 864 578 223 165 6 chr9 36644080 36644238 -87431934 - B3A SINE B2 -15 183 1 4 864 273 283 19 39 chr9 36644244 36644347 -87431825 - MIR SINE MIR -106 156 56 4 864 488 74 0 78 chr9 36644405 36644508 -87431664 + C-rich Low_complexity Low_complexity 2 96 0 4 864 635 218 53 8 chr9 36644609 36644796 -87431376 - B3 SINE B2 -4 212 1 4 864 224 149 21 0 chr9 36645240 36645287 -87430885 + CT-rich Low_complexity Low_complexity 3 50 0 4 864 750 93 0 0 chr9 36645294 36645402 -87430770 + (TTTCC)n Simple_repeat Simple_repeat 4 111 0 4 864 486 0 0 0 chr9 36645403 36645457 -87430715 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 4 864 379 227 0 0 chr9 36645459 36645525 -87430647 - ID_B1 SINE B4 -14 210 145 4 864 2043 245 51 8 chr9 36645527 36646001 -87430171 - Lx9 LINE L1 -728 6916 6423 4 864 255 79 0 0 chr9 36646142 36646180 -87429992 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 864 261 0 0 0 chr9 36646266 36646295 -87429877 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 864 1193 63 0 0 chr9 36646407 36646550 -87429622 + B1_Mm SINE Alu 4 146 -1 4 864 212 0 36 0 chr9 36646552 36646580 -87429592 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 864 1394 207 48 150 chr9 36646834 36646960 -87429212 - MTD LTR MaLR -1 418 346 4 864 1091 110 0 0 chr9 36646960 36647106 -87429066 - B1_Mus1 SINE Alu 0 148 3 4 864 1394 207 48 150 chr9 36647106 36647440 -87428732 - MTD LTR MaLR -74 345 5 4 864 221 0 0 33 chr9 36647501 36647531 -87428641 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 864 317 264 153 15 chr9 36647593 36647724 -87428448 - B1F2 SINE Alu 0 149 1 4 864 478 246 8 43 chr9 36648415 36648551 -87427621 - B1F SINE Alu -10 139 10 4 864 304 271 0 0 chr9 36648597 36648667 -87427505 - ID4 SINE ID -9 74 5 4 864 1249 28 7 0 chr9 36648969 36649114 -87427058 - B1_Mus2 SINE Alu -1 146 1 4 864 684 45 0 0 chr9 36649149 36649238 -87426934 + B1_Mus2 SINE Alu 59 147 0 4 864 216 0 0 0 chr9 36649243 36649267 -87426905 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 864 1080 111 28 6 chr9 36649274 36649455 -87426717 + B2_Mm2 SINE B2 7 191 -4 5 864 261 258 180 0 chr9 36649589 36649678 -87426494 - MER46C DNA MER2_type -151 187 83 5 864 569 145 31 19 chr9 36649786 36649948 -87426224 + GA-rich Low_complexity Low_complexity 1 164 0 5 864 349 287 153 11 chr9 36650079 36650255 -87425917 - MIR SINE MIR -53 209 9 5 864 198 118 0 0 chr9 36650401 36650435 -87425737 + (TGG)n Simple_repeat Simple_repeat 1 34 0 5 864 225 182 42 70 chr9 36650490 36650561 -87425611 - B4A SINE B4 -7 285 217 5 864 874 249 56 10 chr9 36650643 36650894 -87425278 - B4A SINE B4 -29 263 1 5 864 210 162 0 26 chr9 36651885 36651923 -87424249 + CT-rich Low_complexity Low_complexity 3 39 0 5 864 180 0 0 0 chr9 36651941 36651961 -87424211 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 864 813 255 15 10 chr9 36651963 36652161 -87424011 - B3 SINE B2 -13 203 5 5 864 25 0 0 0 chr9 36652181 36652206 -87423966 + AT_rich Low_complexity Low_complexity 1 25 0 5 864 431 279 120 14 chr9 36652207 36652349 -87423823 - RSINE1 SINE B4 -7 158 2 5 864 373 246 68 34 chr9 36652439 36652465 -87423707 + B4 SINE B4 58 87 -205 5 864 654 86 6 31 chr9 36652465 36652576 -87423596 + B1_Mus1 SINE Alu 1 112 -8 5 864 776 267 10 10 chr9 36652808 36653016 -87423156 + ID_B1 SINE B4 3 210 -14 5 864 190 310 23 35 chr9 36653397 36653484 -87422688 + L2b LINE L2 3285 3370 -5 5 864 195 103 0 0 chr9 36653832 36653861 -87422311 + MIRm SINE MIR 88 116 -160 5 864 336 296 53 0 chr9 36654750 36654882 -87421290 + B1F SINE Alu 3 141 -8 5 864 795 57 0 0 chr9 36654921 36655026 -87421146 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 5 864 278 260 14 14 chr9 36655062 36655136 -87421036 + CT-rich Low_complexity Low_complexity 3 76 0 5 864 426 152 127 0 chr9 36655149 36655241 -87420931 - PB1D10 SINE Alu -9 118 6 5 864 797 233 0 0 chr9 36655587 36655737 -87420435 + B1_Mur4 SINE Alu 1 150 0 5 864 381 162 0 0 chr9 36655739 36655807 -87420365 + GA-rich Low_complexity Low_complexity 2 69 0 5 864 874 286 42 42 chr9 36656595 36656855 -87419317 + B4A SINE B4 2 269 -23 5 864 360 0 0 0 chr9 36656855 36656895 -87419277 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 864 874 286 42 42 chr9 36656895 36656919 -87419253 + B4A SINE B4 270 286 -6 5 864 305 253 165 0 chr9 36657246 36657337 -87418835 - B1_Mur2 SINE Alu -43 106 1 5 864 1385 86 32 0 chr9 36658270 36658457 -87417715 + B2_Mm2 SINE B2 1 193 -2 5 864 272 250 66 0 chr9 36658488 36658564 -87417608 - ID4 SINE ID -1 82 2 5 864 428 228 30 18 chr9 36658666 36658785 -87417387 + PB1D7 SINE Alu 1 120 -29 5 864 755 185 96 0 chr9 36659008 36659154 -87417018 + B3A SINE B2 1 160 -38 5 864 423 0 0 0 chr9 36659163 36659210 -87416962 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 864 687 321 69 13 chr9 36659341 36659644 -87416528 - MLT1A0 LTR MaLR -25 340 21 5 864 317 242 96 32 chr9 36660261 36660355 -87415817 - L1MEf LINE L1 -2549 3770 3671 5 864 240 200 0 0 chr9 36660355 36660410 -87415762 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 5 864 565 249 62 121 chr9 36660412 36660636 -87415536 - B4A SINE B4 0 292 82 5 864 8121 41 9 14 chr9 36660661 36661959 -87414213 - L1Md_F2 LINE L1 -10 6572 5294 5 864 435 240 0 10 chr9 36661959 36662056 -87414116 - B4A SINE B4 -196 96 1 5 864 22 35 0 0 chr9 36662144 36662173 -87413999 + AT_rich Low_complexity Low_complexity 1 29 0 5 864 638 267 34 0 chr9 36662173 36662319 -87413853 - RSINE1 SINE B4 -10 155 5 5 864 332 262 121 81 chr9 36662369 36662543 -87413629 - L1MEf LINE L1 -2835 3484 3304 5 864 1185 181 0 5 chr9 36662554 36662765 -87413407 - B3 SINE B2 -3 213 4 5 864 472 225 14 0 chr9 36662765 36662878 -87413294 + CT-rich Low_complexity Low_complexity 30 144 0 5 864 992 212 86 0 chr9 36662878 36663076 -87413096 - B3 SINE B2 -1 215 1 5 864 472 225 14 0 chr9 36663076 36663104 -87413068 + polypyrimidine Low_complexity Low_complexity 2 29 0 5 864 762 147 0 68 chr9 36663119 36663265 -87412907 - B1_Mur4 SINE Alu -12 138 3 5 864 504 266 18 0 chr9 36663360 36663473 -87412699 - B1_Mur2 SINE Alu -8 141 27 5 864 310 272 96 14 chr9 36663567 36663776 -87412396 - L1MEf LINE L1 -4255 2160 1935 5 864 273 248 115 29 chr9 36663831 36663935 -87412237 + ID_B1 SINE B4 104 216 -8 5 864 228 218 160 47 chr9 36664042 36664148 -87412024 - L1MEf LINE L1 -6205 195 78 5 864 318 80 0 0 chr9 36664421 36664471 -87411701 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 5 864 1146 70 0 0 chr9 36664472 36664614 -87411558 - B1_Mus1 SINE Alu -5 143 2 5 864 216 0 0 0 chr9 36664769 36664793 -87411379 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 5 864 264 320 104 88 chr9 36665668 36665860 -87410312 - ID_B1 SINE B4 -19 205 11 5 864 786 109 0 0 chr9 36665876 36665995 -87410177 + (TA)n Simple_repeat Simple_repeat 1 119 0 5 864 265 258 218 40 chr9 36666091 36666192 -87409980 - PB1D7 SINE Alu -1 119 1 5 864 544 137 20 0 chr9 36666622 36666724 -87409448 + CT-rich Low_complexity Low_complexity 2 105 0 5 864 306 0 0 0 chr9 36666724 36666758 -87409414 + (TTA)n Simple_repeat Simple_repeat 1 34 0 5 864 310 318 11 0 chr9 36667296 36667384 -87408788 + CT-rich Low_complexity Low_complexity 1 89 0 5 864 315 313 111 0 chr9 36667384 36667483 -87408689 - PB1D7 SINE Alu -1 119 10 5 864 248 352 28 9 chr9 36667403 36667509 -87408663 - ID_B1 SINE B4 -48 176 69 5 864 492 304 7 61 chr9 36667510 36667657 -87408515 - ID_B1 SINE B4 -4 220 82 5 864 22 35 0 0 chr9 36667759 36667788 -87408384 + AT_rich Low_complexity Low_complexity 1 29 0 5 864 798 174 238 0 chr9 36667788 36667960 -87408212 - B3 SINE B2 0 216 4 5 864 1033 133 85 0 chr9 36668628 36668793 -87407379 + B2_Mm2 SINE B2 3 181 -14 5 864 382 50 17 0 chr9 36668828 36668888 -87407284 + B2_Mm1a SINE B2 127 187 -6 5 864 22 0 0 0 chr9 36669044 36669066 -87407106 + AT_rich Low_complexity Low_complexity 1 22 0 5 864 818 153 22 7 chr9 36669073 36669211 -87406961 - B1_Mus2 SINE Alu -7 140 1 5 864 272 274 0 0 chr9 36669922 36669973 -87406199 - B1_Mur1 SINE Alu -33 116 66 5 864 749 265 49 22 chr9 36670011 36670196 -87405976 - B3A SINE B2 0 198 9 5 864 486 0 0 0 chr9 36671311 36671365 -87404807 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 5 864 612 115 0 22 chr9 36671366 36671455 -87404717 - B1_Mur1 SINE Alu -14 135 49 5 864 308 221 86 122 chr9 36671394 36671533 -87404639 - MT2B LTR ERVL -338 263 130 5 864 216 0 0 0 chr9 36671723 36671747 -87404425 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 864 420 20 0 0 chr9 36671848 36671897 -87404275 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 864 192 143 0 0 chr9 36671986 36672014 -87404158 - MIRc SINE MIR -153 115 88 5 864 460 268 9 0 chr9 36672080 36672192 -87403980 - MER67C LTR ERV1 -90 621 509 5 864 585 307 22 6 chr9 36672213 36672393 -87403779 - MER67C LTR ERV1 -407 304 122 5 864 633 124 0 0 chr9 36672425 36672554 -87403618 + (TC)n Simple_repeat Simple_repeat 1 129 0 5 864 216 0 0 0 chr9 36672554 36672578 -87403594 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 864 220 171 24 0 chr9 36672649 36672690 -87403482 - ID4_ SINE ID -39 44 3 5 864 885 68 0 0 chr9 36673563 36673680 -87402492 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 5 864 1340 70 12 0 chr9 36673680 36673852 -87402320 - B2_Mm1t SINE B2 -18 175 2 5 864 665 159 12 19 chr9 36673877 36674037 -87402135 + CT-rich Low_complexity Low_complexity 5 163 0 5 864 291 269 15 0 chr9 36674046 36674113 -87402059 - ID4 SINE ID -11 72 5 5 864 351 283 85 0 chr9 36674149 36674255 -87401917 + PB1D10 SINE Alu 3 117 0 5 864 998 208 0 48 chr9 36674261 36674468 -87401704 + B3 SINE B2 2 198 -18 5 864 601 226 50 21 chr9 36674513 36674653 -87401519 - B1_Mur2 SINE Alu -5 144 1 5 864 258 267 18 114 chr9 36674552 36674666 -87401506 - MT2B LTR ERVL -344 257 155 5 864 188 291 0 18 chr9 36675638 36675694 -87400478 - L2b LINE L2 -15 3360 3306 5 864 241 235 112 45 chr9 36675730 36675819 -87400353 - LTR81B LTR ERV1? -1031 362 268 5 864 435 38 0 0 chr9 36678147 36678200 -87397972 + (TCC)n Simple_repeat Simple_repeat 2 54 0 5 864 311 0 0 25 chr9 36678364 36678404 -87397768 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 5 864 477 0 0 0 chr9 36679122 36679175 -87396997 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 5 864 1243 119 17 0 chr9 36679176 36679352 -87396820 - B2_Mm2 SINE B2 -15 180 2 5 864 466 242 97 0 chr9 36679469 36679593 -87396579 - B1F1 SINE Alu -9 140 5 5 864 1068 231 0 9 chr9 36679595 36679809 -87396363 - B3 SINE B2 -1 215 4 5 864 555 180 62 9 chr9 36679829 36679941 -87396231 - PB1D9 SINE Alu 0 120 3 5 864 521 196 6 12 chr9 36679968 36680139 -87396033 + CT-rich Low_complexity Low_complexity 1 170 0 5 864 228 298 0 0 chr9 36680163 36680210 -87395962 - PB1D7 SINE Alu -72 48 2 5 864 28 0 0 0 chr9 36680215 36680243 -87395929 + AT_rich Low_complexity Low_complexity 1 28 0 5 864 672 217 114 6 chr9 36680244 36680402 -87395770 - B3 SINE B2 -2 214 40 5 864 515 220 27 154 chr9 36680707 36680895 -87395277 + RSINE1 SINE B4 1 164 -1 5 864 618 259 0 0 chr9 36680895 36681011 -87395161 - B3 SINE B2 -99 117 2 5 864 341 156 360 7 chr9 36681036 36681172 -87395000 - B2_Mm2 SINE B2 -10 185 2 5 864 643 246 14 40 chr9 36681554 36681702 -87394470 + RSINE1 SINE B4 20 163 -2 6 864 240 143 0 0 chr9 36681836 36681878 -87394294 + (T)n Simple_repeat Simple_repeat 1 42 0 6 864 878 170 14 0 chr9 36683360 36683507 -87392665 + B1_Mur1 SINE Alu 1 149 0 6 864 231 213 21 0 chr9 36684348 36684395 -87391777 - ID4_ SINE ID -24 59 12 6 864 466 205 358 0 chr9 36684512 36684663 -87391509 - B3 SINE B2 -10 206 2 6 864 325 264 132 0 chr9 36684694 36684800 -87391372 - L1MC5 LINE L1 -182 7779 7660 6 864 294 50 0 0 chr9 36685006 36685046 -87391126 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 6 864 601 186 0 0 chr9 36685103 36685205 -87390967 - ID_B1 SINE B4 -16 208 107 6 864 374 235 147 9 chr9 36685205 36685219 -87390953 - B1F SINE Alu -16 133 2 6 864 327 104 0 0 chr9 36685233 36685281 -87390891 + (CAA)n Simple_repeat Simple_repeat 2 49 0 6 864 258 273 168 12 chr9 36685294 36685461 -87390711 - L1MC5 LINE L1 -468 7493 7301 6 864 224 288 96 22 chr9 36685658 36685793 -87390379 + L3b LINE CR1 190 334 -148 6 864 411 0 0 48 chr9 36687530 36687592 -87388580 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 864 208 121 0 0 chr9 36687961 36687994 -87388178 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 6 864 207 0 0 0 chr9 36689602 36689625 -87386547 + (T)n Simple_repeat Simple_repeat 1 23 0 6 864 315 0 0 0 chr9 36689813 36689848 -87386324 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 864 297 0 0 0 chr9 36689848 36689880 -87386292 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 864 188 0 0 69 chr9 36690112 36690141 -87386031 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 6 864 293 312 12 0 chr9 36690854 36690934 -87385238 - ID4_ SINE ID 0 83 3 6 864 305 229 114 0 chr9 36690947 36691017 -87385155 - B1_Mur1 SINE Alu -26 123 46 6 864 675 208 0 16 chr9 36691031 36691158 -87385014 - ID_B1 SINE B4 -1 223 99 6 864 663 218 42 14 chr9 36691158 36691175 -87384997 - B1F SINE Alu -1 148 1 6 864 351 113 0 0 chr9 36692219 36692281 -87383891 + (CATG)n Simple_repeat Simple_repeat 1 62 0 6 864 194 0 0 37 chr9 36692490 36692517 -87383655 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 6 864 1102 115 17 0 chr9 36692517 36692691 -87383481 - B2_Mm2 SINE B2 -15 180 4 6 864 1168 90 0 40 chr9 36692922 36693095 -87383077 + B2_Mm2 SINE B2 3 168 -27 6 864 356 307 17 17 chr9 36693886 36694002 -87382170 - PB1D10 SINE Alu -1 116 1 6 864 4469 60 2 28 chr9 36694036 36694615 -87381557 + LTRIS2 LTR ERV1 1 564 0 6 864 788 241 6 0 chr9 36694615 36694773 -87381399 - RSINE1 SINE B4 -5 160 2 6 864 2536 74 170 5 chr9 36694938 36695125 -87381047 + BGLII_A LTR ERVK 1 246 -199 6 864 738 78 0 0 chr9 36695125 36695227 -87380945 + (GA)n Simple_repeat Simple_repeat 1 102 0 6 864 2536 74 170 5 chr9 36695227 36695421 -87380751 + BGLII_A LTR ERVK 247 445 0 6 864 282 303 57 8 chr9 36695429 36695552 -87380620 - Charlie8 DNA MER1_type -1965 463 335 6 864 380 252 19 186 chr9 36695564 36695720 -87380452 + B1F SINE Alu 13 142 -7 6 864 362 293 64 7 chr9 36695727 36695868 -87380304 + B1F1 SINE Alu 1 149 0 6 864 455 107 13 0 chr9 36695919 36695994 -87380178 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 864 303 28 0 0 chr9 36695994 36696030 -87380142 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 864 296 306 0 14 chr9 36696037 36696110 -87380062 + ID4 SINE ID 8 79 -4 6 864 275 256 149 58 chr9 36696260 36696386 -87379786 - Charlie8 DNA MER1_type -2207 221 83 6 864 1354 82 33 0 chr9 36696386 36696568 -87379604 - B2_Mm1a SINE B2 -5 188 1 6 864 275 256 149 58 chr9 36696568 36696615 -87379557 - Charlie8 DNA MER1_type -2346 82 32 6 864 330 191 32 0 chr9 36697319 36697382 -87378790 + MER103 DNA DNA 37 101 -65 6 864 418 239 187 59 chr9 36697511 36697698 -87378474 - B3 SINE B2 -4 212 2 6 864 279 0 0 0 chr9 36697730 36697761 -87378411 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 864 536 273 36 0 chr9 36697825 36697964 -87378208 - ID_B1 SINE B4 -1 223 80 6 865 261 98 0 0 chr9 36700474 36700515 -87375657 + (TCC)n Simple_repeat Simple_repeat 1 41 0 6 865 21 36 0 0 chr9 36700909 36700937 -87375235 + AT_rich Low_complexity Low_complexity 1 28 0 6 865 427 266 121 0 chr9 36701548 36701672 -87374500 + ID_B1 SINE B4 86 224 0 6 865 234 62 0 0 chr9 36701749 36701781 -87374391 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 865 182 278 37 0 chr9 36702200 36702254 -87373918 - MIRm SINE MIR -126 150 95 6 865 241 211 0 0 chr9 36703512 36703550 -87372622 + B1_Mus1 SINE Alu 2 39 -109 6 865 240 111 0 27 chr9 36703542 36703579 -87372593 + B1_Mus2 SINE Alu 75 110 -37 6 865 304 214 236 0 chr9 36703931 36704020 -87372152 + PB1D10 SINE Alu 5 114 -3 6 865 365 311 25 8 chr9 36704902 36705022 -87371150 - MER2 DNA MER2_type -1 344 223 6 865 439 285 60 23 chr9 36705079 36705212 -87370960 - MER2 DNA MER2_type -115 230 93 6 865 190 321 69 35 chr9 36705897 36705984 -87370188 - L3b LINE CR1 -68 414 325 6 865 227 344 92 15 chr9 36706278 36706408 -87369764 - MER70B LTR ERVL -316 262 123 6 865 210 37 0 0 chr9 36706934 36706961 -87369211 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 6 865 237 65 0 0 chr9 36707867 36707898 -87368274 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 865 753 225 0 14 chr9 36707898 36708038 -87368134 - ID_B1 SINE B4 -7 217 80 6 865 1378 232 40 106 chr9 36710338 36710420 -87365752 + MTE2a LTR MaLR 11 99 -280 6 865 402 21 0 0 chr9 36710420 36710467 -87365705 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 865 1378 232 40 106 chr9 36710467 36710557 -87365615 + MTE2a LTR MaLR 100 180 -199 6 865 1395 68 6 0 chr9 36710557 36710716 -87365456 + B2_Mm1a SINE B2 2 160 -33 6 865 282 29 0 0 chr9 36710716 36710751 -87365421 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 865 1395 68 6 0 chr9 36710751 36710768 -87365404 + B2_Mm1a SINE B2 161 177 -16 6 865 1378 232 40 106 chr9 36710768 36710989 -87365183 + MTE2a LTR MaLR 181 379 0 6 865 202 354 24 0 chr9 36710989 36711071 -87365101 - MIRc SINE MIR -105 163 80 6 865 486 0 0 0 chr9 36711128 36711182 -87364990 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 865 609 179 33 41 chr9 36711202 36711324 -87364848 - RSINE1 SINE B4 -36 129 9 6 865 404 326 83 52 chr9 36712410 36712817 -87363355 + L1MB8 LINE L1 5690 6109 -69 6 865 740 217 91 48 chr9 36712824 36713032 -87363140 - ID_B1 SINE B4 -2 222 6 6 865 577 257 50 15 chr9 36713462 36713673 -87362499 + MIRb SINE MIR 3 223 -45 6 865 897 139 22 0 chr9 36714499 36714636 -87361536 + B1_Mur4 SINE Alu 2 141 -9 6 865 432 99 0 0 chr9 36714646 36714717 -87361455 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 865 337 333 54 7 chr9 36714734 36714882 -87361290 + Tigger13a DNA MER2_type 408 562 -209 6 865 821 277 61 61 chr9 36715309 36715418 -87360754 + B4A SINE B4 2 108 -184 6 865 857 186 7 7 chr9 36715418 36715564 -87360608 - B1_Mur1 SINE Alu -3 146 1 6 865 821 277 61 61 chr9 36715564 36715731 -87360441 + B4A SINE B4 109 278 -14 6 865 288 0 0 0 chr9 36715769 36715801 -87360371 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 865 378 0 0 0 chr9 36715801 36715842 -87360330 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 865 366 292 47 9 chr9 36716185 36716292 -87359880 + PB1D10 SINE Alu 7 117 0 6 865 462 218 45 9 chr9 36716362 36716473 -87359699 - PB1D10 SINE Alu 0 117 3 6 865 381 123 0 0 chr9 36717148 36717213 -87358959 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 865 614 273 60 10 chr9 36717627 36717827 -87358345 - MIRc SINE MIR -15 253 44 6 865 285 146 0 0 chr9 36718237 36718285 -87357887 + (GAA)n Simple_repeat Simple_repeat 2 49 0 6 865 368 258 79 0 chr9 36719155 36719244 -87356928 - MER5B DNA MER1_type -63 115 20 6 865 255 239 167 14 chr9 36719385 36719409 -87356763 - ID4 SINE ID 0 83 1 6 865 266 208 0 0 chr9 36719409 36719457 -87356715 - ID SINE ID -176 48 1 6 865 296 292 62 0 chr9 36720874 36720970 -87355202 - MIRc SINE MIR -130 138 37 6 865 564 116 0 0 chr9 36721114 36721200 -87354972 + (TTCC)n Simple_repeat Simple_repeat 1 86 0 6 865 961 184 5 101 chr9 36721992 36722210 -87353962 - B3A SINE B2 0 198 2 6 865 207 0 0 0 chr9 36722916 36722939 -87353233 + (T)n Simple_repeat Simple_repeat 1 23 0 6 865 189 234 0 0 chr9 36723718 36723782 -87352390 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 865 279 292 83 0 chr9 36723782 36723878 -87352294 - RMER12 LTR ERVK -474 848 745 6 865 650 231 105 21 chr9 36725747 36725937 -87350235 + B3 SINE B2 2 207 -9 6 865 184 286 76 45 chr9 36725996 36726062 -87350110 + MIRm SINE MIR 159 226 -50 6 865 254 266 152 0 chr9 36726011 36726090 -87350082 + L2c LINE L2 3297 3387 0 6 865 258 81 0 0 chr9 36727352 36727389 -87348783 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 865 441 0 0 0 chr9 36727389 36727437 -87348735 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 865 419 52 0 17 chr9 36728060 36728119 -87348053 + (TCC)n Simple_repeat Simple_repeat 3 60 0 6 865 342 0 0 0 chr9 36729305 36729343 -87346829 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 865 349 230 0 51 chr9 36730957 36731035 -87345137 + PB1D10 SINE Alu 44 117 0 6 865 412 328 83 33 chr9 36731550 36731790 -87344382 + MIRc SINE MIR 2 253 -15 6 865 681 286 0 0 chr9 36732115 36732255 -87343917 - ID_B1 SINE B4 -9 215 76 6 865 902 179 0 38 chr9 36732406 36732563 -87343609 - RSINE1 SINE B4 -10 155 5 6 865 186 349 16 0 chr9 36732673 36732736 -87343436 + L2b LINE L2 3240 3303 -72 6 865 551 147 14 0 chr9 36732971 36733114 -87343058 + (CAGA)n Simple_repeat Simple_repeat 4 148 0 6 865 392 264 7 67 chr9 36733245 36733395 -87342777 + L1MD2 LINE L1 4908 5048 -1098 6 865 894 172 14 0 chr9 36733403 36733548 -87342624 + B1_Mus2 SINE Alu 1 147 0 7 865 443 126 10 31 chr9 36733585 36733683 -87342489 + GA-rich Low_complexity Low_complexity 5 100 0 7 865 305 239 70 17 chr9 36733683 36733798 -87342374 + L1MD2 LINE L1 5052 5172 -974 6 865 671 181 66 29 chr9 36733815 36733952 -87342220 + B1_Mur2 SINE Alu 6 147 -2 7 865 1255 240 42 56 chr9 36733978 36734418 -87341754 + L1MD2 LINE L1 5146 5608 -751 6 865 752 176 40 40 chr9 36734418 36734566 -87341606 + B1_Mur2 SINE Alu 2 149 0 7 865 1255 261 73 128 chr9 36734566 36734722 -87341450 + L1MD2 LINE L1 5609 5684 -675 6 865 480 18 0 0 chr9 36734722 36734779 -87341393 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 865 1255 263 74 119 chr9 36734779 36735073 -87341099 + L1MD2 LINE L1 5685 6002 -172 6 865 241 239 302 36 chr9 36735092 36735231 -87340941 + L1MD2 LINE L1 6168 6343 -16 6 865 709 289 81 37 chr9 36735369 36735642 -87340530 + B4 SINE B4 1 285 -7 7 865 418 289 38 63 chr9 36735978 36736194 -87339978 - MIRb SINE MIR -27 241 20 7 865 194 321 97 9 chr9 36736379 36736492 -87339680 - L3 LINE CR1 -185 4304 4182 7 865 302 230 22 22 chr9 36736577 36736666 -87339506 + T-rich Low_complexity Low_complexity 5 93 0 7 865 277 265 15 0 chr9 36736709 36736777 -87339395 - ID4 SINE ID -10 73 5 7 865 29 28 0 0 chr9 36736949 36736985 -87339187 + AT_rich Low_complexity Low_complexity 1 36 0 7 865 353 306 81 0 chr9 36737358 36737482 -87338690 + MIRc SINE MIR 104 237 -31 7 865 554 184 19 0 chr9 36737514 36737617 -87338555 - ID_B1 SINE B4 -5 219 115 7 865 955 224 6 0 chr9 36737979 36738144 -87338028 - B3A SINE B2 -30 168 3 7 865 361 324 67 33 chr9 36738673 36738823 -87337349 - MIRc SINE MIR -17 251 97 7 865 325 253 27 0 chr9 36739495 36739570 -87336602 + ID4_ SINE ID 7 83 0 7 865 369 0 0 0 chr9 36739657 36739698 -87336474 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 865 1179 116 0 0 chr9 36739698 36739955 -87336217 + (TG)n Simple_repeat Simple_repeat 1 257 0 7 865 813 250 12 0 chr9 36740058 36740230 -87335942 + B4 SINE B4 2 175 -117 7 865 251 255 117 10 chr9 36740146 36740249 -87335923 + B1F2 SINE Alu 5 118 -31 7 865 453 19 0 0 chr9 36740253 36740307 -87335865 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 865 225 0 0 0 chr9 36740314 36740339 -87335833 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 865 358 254 40 24 chr9 36740384 36740509 -87335663 + MIR SINE MIR 135 261 -1 7 865 231 301 126 0 chr9 36742279 36742382 -87333790 - MIRb SINE MIR -74 194 79 7 865 237 321 12 0 chr9 36742899 36742980 -87333192 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 7 865 257 286 0 0 chr9 36742914 36742970 -87333202 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 865 210 37 0 0 chr9 36743116 36743143 -87333029 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 865 267 31 0 0 chr9 36744482 36744514 -87331658 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 865 234 91 0 0 chr9 36744821 36744854 -87331318 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 865 184 211 0 55 chr9 36745177 36745232 -87330940 - L3 LINE CR1 -3334 1155 1104 7 865 1025 255 0 0 chr9 36745361 36745565 -87330607 + MER3 DNA MER1_type 2 205 -4 7 865 383 203 134 31 chr9 36746840 36746967 -87329205 - L2a LINE L2 -258 3168 3029 7 865 214 245 8 91 chr9 36747292 36747413 -87328759 + (TTTA)n Simple_repeat Simple_repeat 3 113 0 7 865 710 250 0 14 chr9 36747417 36747559 -87328613 - RSINE1 SINE B4 -13 152 13 7 865 414 0 0 0 chr9 36748163 36748209 -87327963 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 865 545 42 14 0 chr9 36748209 36748280 -87327892 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 865 258 262 86 12 chr9 36748359 36748440 -87327732 - B4A SINE B4 -204 88 2 7 865 1212 68 0 0 chr9 36749578 36749725 -87326447 - B1_Mus1 SINE Alu 0 148 2 7 865 21 36 0 0 chr9 36749982 36750010 -87326162 + AT_rich Low_complexity Low_complexity 1 28 0 7 865 211 295 26 103 chr9 36750785 36750902 -87325270 - FAM SINE Alu -29 282 175 7 865 635 36 0 12 chr9 36751396 36751479 -87324693 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 7 865 912 241 14 23 chr9 36751521 36751742 -87324430 - B4A SINE B4 -72 220 2 7 865 544 267 46 0 chr9 36751906 36752037 -87324135 - B1F SINE Alu -11 138 2 7 865 189 0 0 0 chr9 36752065 36752086 -87324086 + (TTA)n Simple_repeat Simple_repeat 1 21 0 7 865 408 88 0 0 chr9 36752844 36752901 -87323271 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 865 492 162 0 0 chr9 36752901 36753006 -87323166 + GA-rich Low_complexity Low_complexity 1 105 0 7 865 765 211 34 0 chr9 36753578 36753725 -87322447 - RSINE1 SINE B4 -9 156 5 7 865 219 114 0 0 chr9 36755336 36755371 -87320801 + (CCCCCT)n Simple_repeat Simple_repeat 3 37 0 7 865 270 224 35 0 chr9 36755673 36755731 -87320441 - B4A SINE B4 -25 267 208 7 865 288 304 103 9 chr9 36755746 36755862 -87320310 - B4A SINE B4 -165 127 1 7 865 266 324 97 21 chr9 36755871 36756016 -87320156 - MIR SINE MIR -36 226 71 7 865 339 208 51 13 chr9 36756187 36756265 -87319907 - MIRc SINE MIR -108 160 80 7 865 308 283 163 0 chr9 36757121 36757213 -87318959 + MER63C DNA AcHobo 273 379 -551 7 865 194 0 0 37 chr9 36757342 36757369 -87318803 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 865 1127 85 0 0 chr9 36757374 36757515 -87318657 - B1_Mus1 SINE Alu -7 141 1 7 865 291 247 0 100 chr9 36757560 36757650 -87318522 - L2b LINE L2 -60 3315 3235 7 865 911 178 114 6 chr9 36759636 36759811 -87316361 - B3 SINE B2 -8 208 15 7 865 390 286 61 54 chr9 36759901 36760049 -87316123 - MER5A1 DNA MER1_type -14 152 4 7 865 1068 94 0 0 chr9 36760056 36760194 -87315978 + B1_Mus1 SINE Alu 1 138 -10 7 865 342 0 0 0 chr9 36760194 36760232 -87315940 + (CAA)n Simple_repeat Simple_repeat 2 39 0 7 865 453 110 0 0 chr9 36760635 36760717 -87315455 + (TC)n Simple_repeat Simple_repeat 2 83 0 7 865 952 83 114 0 chr9 36760730 36760862 -87315310 - B1_Mus1 SINE Alu 0 148 2 7 865 180 0 0 0 chr9 36761638 36761658 -87314514 + (G)n Simple_repeat Simple_repeat 1 20 0 7 865 241 360 47 47 chr9 36761747 36761916 -87314256 + MER5A DNA MER1_type 10 178 -11 7 865 243 0 0 0 chr9 36762603 36762630 -87313542 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 865 579 286 0 0 chr9 36762684 36762810 -87313362 - ID_B1 SINE B4 0 224 99 7 865 235 326 19 87 chr9 36762727 36762831 -87313341 - MT2B LTR ERVL -345 256 160 7 865 210 71 0 0 chr9 36762874 36762902 -87313270 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 7 865 892 211 19 29 chr9 36762977 36763016 -87313156 - B3 SINE B2 -13 203 167 7 865 219 69 0 0 chr9 36763016 36763045 -87313127 + (TATG)n Simple_repeat Simple_repeat 2 30 0 7 865 892 211 19 29 chr9 36763045 36763210 -87312962 - B3 SINE B2 -50 166 2 7 865 395 0 40 0 chr9 36763764 36763814 -87312358 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 7 865 284 361 32 21 chr9 36764818 36765005 -87311167 + L3 LINE CR1 3440 3628 -861 7 865 196 348 35 69 chr9 36765318 36765463 -87310709 + L3 LINE CR1 4036 4175 -314 7 865 405 0 0 0 chr9 36766089 36766134 -87310038 + (CAGGG)n Simple_repeat Simple_repeat 1 45 0 7 865 225 237 16 48 chr9 36766144 36766206 -87309966 + MER63B DNA AcHobo 19 78 -358 7 865 368 312 21 99 chr9 36766204 36766346 -87309826 + MER63B DNA AcHobo 303 433 -3 7 865 959 85 0 7 chr9 36767040 36767133 -87309039 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 7 865 1291 56 6 16 chr9 36767133 36767315 -87308857 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 7 865 959 85 0 7 chr9 36767315 36767363 -87308809 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 7 865 230 337 21 52 chr9 36767724 36767821 -87308351 - MIR3 SINE MIR -22 186 93 7 865 189 0 0 0 chr9 36768757 36768778 -87307394 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 7 865 280 292 174 34 chr9 36768782 36768931 -87307241 + MIRb SINE MIR 97 266 -2 7 865 195 42 0 0 chr9 36770706 36770730 -87305442 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 865 441 47 71 0 chr9 36773064 36773149 -87303023 + (TA)n Simple_repeat Simple_repeat 2 92 0 7 865 22 0 0 0 chr9 36775305 36775327 -87300845 + GC_rich Low_complexity Low_complexity 1 22 0 7 865 324 0 0 0 chr9 36776752 36776788 -87299384 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 865 202 140 34 34 chr9 36777228 36777287 -87298885 + T-rich Low_complexity Low_complexity 4 62 0 7 865 218 349 24 24 chr9 36777388 36777473 -87298699 - MIRm SINE MIR -3 273 189 7 865 414 100 0 0 chr9 36777853 36777913 -87298259 + (TCC)n Simple_repeat Simple_repeat 1 60 0 7 865 253 282 0 40 chr9 36777914 36777988 -87298184 - ID4_ SINE ID -11 72 2 7 865 273 184 167 33 chr9 36778044 36778134 -87298038 + PB1D10 SINE Alu 1 102 -15 7 865 393 70 0 0 chr9 36778134 36778191 -87297981 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 865 360 0 0 0 chr9 36778486 36778526 -87297646 + (T)n Simple_repeat Simple_repeat 1 40 0 7 865 329 240 53 13 chr9 36780309 36780402 -87295770 - PB1D10 SINE Alu 0 120 14 7 865 207 0 0 0 chr9 36781692 36781715 -87294457 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 865 358 221 35 0 chr9 36781862 36781975 -87294197 + G-rich Low_complexity Low_complexity 2 118 0 7 865 236 174 0 0 chr9 36783682 36783728 -87292444 + G-rich Low_complexity Low_complexity 1 46 0 7 865 295 306 62 31 chr9 36784111 36784239 -87291933 - PB1D10 SINE Alu -17 132 1 7 865 232 250 109 0 chr9 36785875 36785939 -87290233 - MIRm SINE MIR -93 183 113 7 865 1093 291 65 38 chr9 36786255 36786652 -87289520 + Tigger8 DNA MER2_type 141 548 -118 7 865 351 0 0 0 chr9 36787077 36787116 -87289056 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 865 3824 118 13 5 chr9 36789285 36789841 -87286331 - Lx4A LINE L1 0 7058 6499 7 865 326 162 29 8 chr9 36790012 36790080 -87286092 - B1F SINE Alu 0 149 61 7 865 187 190 0 33 chr9 36790080 36790140 -87286032 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 865 57 28 0 0 chr9 36790142 36790213 -87285959 + AT_rich Low_complexity Low_complexity 1 71 0 8 865 951 211 57 24 chr9 36790238 36790447 -87285725 + B3 SINE B2 1 216 0 8 865 623 239 0 55 chr9 36790595 36790741 -87285431 + B1F2 SINE Alu 3 140 -9 8 865 496 298 0 0 chr9 36791088 36791202 -87284970 - PB1D10 SINE Alu -2 115 2 8 865 1230 35 7 0 chr9 36791517 36791662 -87284510 - B1_Mus2 SINE Alu -1 146 1 8 865 289 276 222 52 chr9 36791912 36791971 -87284201 + ID_B1 SINE B4 46 224 0 8 865 499 202 11 0 chr9 36791971 36792065 -87284107 + PB1D10 SINE Alu 23 117 0 8 865 211 286 0 0 chr9 36792065 36792114 -87284058 + GA-rich Low_complexity Low_complexity 1 49 0 8 865 258 116 0 0 chr9 36792745 36792788 -87283384 + (CAGG)n Simple_repeat Simple_repeat 3 45 0 8 865 199 71 48 0 chr9 36794101 36794143 -87282029 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 865 558 0 0 0 chr9 36794654 36794716 -87281456 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 865 209 399 29 22 chr9 36796687 36796823 -87279349 + L2c LINE L2 3183 3319 -68 8 865 1166 126 65 11 chr9 36796872 36797057 -87279115 - B2_Mm2 SINE B2 0 195 1 8 865 871 178 14 7 chr9 36797321 36797468 -87278704 - B1_Mur3 SINE Alu -1 148 1 8 865 273 313 95 12 chr9 36797474 36797642 -87278530 - L1M5 LINE L1 -297 5827 5646 8 865 450 0 0 0 chr9 36799682 36799732 -87276440 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 865 424 143 24 0 chr9 36799849 36799933 -87276239 + (TCCA)n Simple_repeat Simple_repeat 3 88 0 8 865 204 193 68 34 chr9 36800371 36800430 -87275742 + MIR SINE MIR 124 184 -78 8 865 313 413 0 6 chr9 36800959 36801139 -87275033 + (CCTG)n Simple_repeat Simple_repeat 1 179 0 8 865 296 400 0 0 chr9 36801086 36801206 -87274966 + (CCCA)n Simple_repeat Simple_repeat 4 123 0 8 865 1180 49 25 0 chr9 36801551 36801713 -87274459 + (GGGAGA)n Simple_repeat Simple_repeat 4 169 0 8 865 202 244 139 13 chr9 36802428 36802507 -87273665 + MIR3 SINE MIR 102 190 -18 8 865 263 28 28 0 chr9 36803219 36803255 -87272917 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 865 594 255 409 16 chr9 36803281 36803547 -87272625 + ORR1D2 LTR MaLR 1 370 0 8 865 316 231 0 15 chr9 36803625 36803691 -87272481 - ID4_ SINE ID -17 66 2 8 865 242 255 109 141 chr9 36803708 36803836 -87272336 + MT2B LTR ERVL 155 278 -323 8 865 397 250 67 52 chr9 36803722 36803736 -87272436 + ID_B1 SINE B4 82 218 -6 8 865 663 198 74 0 chr9 36803736 36803857 -87272315 + B1_Mur2 SINE Alu 14 143 -6 8 865 364 202 19 136 chr9 36803874 36803977 -87272195 - PB1 SINE Alu -11 116 26 8 865 310 218 0 0 chr9 36804051 36804106 -87272066 + tRNA-Ala-GCA tRNA tRNA 18 72 -3 8 865 240 343 19 0 chr9 36804106 36804156 -87272016 + BC1_Mm scRNA scRNA 24 130 -22 8 865 419 218 15 68 chr9 36804624 36804757 -87271415 - MER96B DNA hAT -258 159 34 8 865 441 271 153 18 chr9 36805454 36805734 -87270438 + MLT1A LTR MaLR 1 332 -33 8 865 428 272 114 104 chr9 36805743 36805936 -87270236 + MER58A DNA MER1_type 27 221 -3 8 865 208 264 122 33 chr9 36806025 36806115 -87270057 + L2c LINE L2 3070 3167 -220 8 865 278 311 26 9 chr9 36806170 36806264 -87269908 - MER94 DNA AcHobo 0 134 60 8 865 788 57 9 0 chr9 36806388 36806494 -87269678 + (TTTTC)n Simple_repeat Simple_repeat 1 107 0 8 865 367 273 40 0 chr9 36806498 36806597 -87269575 - PB1D7 SINE Alu -17 103 1 8 865 283 370 76 68 chr9 36807400 36807783 -87268389 + L2b LINE L2 2933 3318 -57 8 865 822 272 38 0 chr9 36807803 36807987 -87268185 + ID_B1 SINE B4 1 191 -33 8 865 573 28 0 0 chr9 36808629 36808700 -87267472 + (TGG)n Simple_repeat Simple_repeat 3 73 0 8 865 329 203 45 38 chr9 36808838 36808971 -87267201 + (CA)n Simple_repeat Simple_repeat 2 135 0 8 865 249 33 0 0 chr9 36810032 36810062 -87266110 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 865 224 312 0 15 chr9 36811309 36811374 -87264798 - MIRc SINE MIR -161 107 44 8 865 219 303 106 0 chr9 36811866 36811998 -87264174 + L2b LINE L2 3002 3147 -228 8 865 285 257 54 0 chr9 36812852 36812926 -87263246 + PB1D10 SINE Alu 1 78 -39 8 865 524 196 0 104 chr9 36813003 36813128 -87263044 - PB1D10 SINE Alu -1 116 5 8 865 187 338 81 0 chr9 36814030 36814104 -87262068 + L3 LINE CR1 2800 2879 -1610 8 865 438 20 0 0 chr9 36814463 36814514 -87261658 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 865 452 252 91 39 chr9 36815057 36815288 -87260884 - L1MA6 LINE L1 -6 6294 6052 8 865 244 301 98 88 chr9 36815371 36815586 -87260586 + L3 LINE CR1 4111 4327 -162 8 865 574 273 7 22 chr9 36816641 36816776 -87259396 - ID_B1 SINE B4 0 224 92 8 865 193 366 58 58 chr9 36816850 36817024 -87259148 - L2c LINE L2 -9 3378 3205 8 865 3282 242 53 29 chr9 36817292 36818161 -87258011 + Lx8 LINE L1 6258 7147 -326 8 865 434 215 154 0 chr9 36818159 36818308 -87257864 + Lx8 LINE L1 7301 7472 -1 8 865 1184 234 56 4 chr9 36820344 36820610 -87255562 + B4A SINE B4 7 286 -6 8 865 261 0 0 0 chr9 36820614 36820643 -87255529 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 865 21 0 0 0 chr9 36820728 36820749 -87255423 + AT_rich Low_complexity Low_complexity 1 21 0 8 865 186 310 120 34 chr9 36820876 36820993 -87255179 + L2b LINE L2 3247 3373 -2 8 865 306 340 29 0 chr9 36821826 36821929 -87254243 + RMER12 LTR ERVK 746 851 -471 8 865 778 213 0 0 chr9 36821932 36822068 -87254104 - B1_Mur2 SINE Alu -12 137 2 8 865 32 26 0 0 chr9 36822069 36822108 -87254064 + AT_rich Low_complexity Low_complexity 1 39 0 8 865 375 260 7 94 chr9 36822108 36822243 -87253929 - RSINE1 SINE B4 -39 126 3 8 865 212 159 333 0 chr9 36822213 36822276 -87253896 - PB1D10 SINE Alu 0 117 34 8 865 249 62 0 0 chr9 36822874 36822906 -87253266 - B1_Mus1 SINE Alu -115 33 2 8 865 268 312 83 28 chr9 36823808 36823953 -87252219 + L2b LINE L2 3050 3202 -173 8 865 202 242 15 29 chr9 36823995 36824063 -87252109 + L2b LINE L2 3293 3359 -16 8 865 190 290 87 0 chr9 36824828 36824897 -87251275 - MIR SINE MIR -55 153 79 8 865 223 209 93 0 chr9 36824976 36825019 -87251153 - MIRm SINE MIR -10 266 220 8 865 187 245 0 19 chr9 36825321 36825375 -87250797 + MIR SINE MIR 95 147 -115 8 865 342 122 0 0 chr9 36825498 36825547 -87250625 + RSINE1 SINE B4 81 129 -36 8 865 302 365 17 50 chr9 36826241 36826420 -87249752 - MIRc SINE MIR -63 205 33 8 865 218 185 18 36 chr9 36826534 36826590 -87249582 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 8 865 201 240 19 39 chr9 36827906 36827958 -87248214 + L2c LINE L2 3110 3160 -227 8 865 282 276 0 13 chr9 36827969 36828046 -87248126 - ID4_ SINE ID -7 76 1 8 865 324 0 0 0 chr9 36828433 36828469 -87247703 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 865 441 0 0 0 chr9 36828470 36828519 -87247653 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 865 1058 230 22 17 chr9 36828519 36828749 -87247423 + MER2 DNA MER2_type 115 345 0 8 865 241 359 55 0 chr9 36828841 36828969 -87247203 - L2a LINE L2 -2 3424 3290 8 865 468 0 0 0 chr9 36829038 36829090 -87247082 + (GA)n Simple_repeat Simple_repeat 2 53 0 8 865 224 331 153 14 chr9 36829153 36829297 -87246875 - L2a LINE L2 -204 3222 3059 8 865 479 310 170 18 chr9 36829323 36829711 -87246461 - L2a LINE L2 -415 3004 2558 8 865 247 295 37 37 chr9 36829985 36830066 -87246106 + ID4_ SINE ID 2 82 -1 8 865 339 318 34 23 chr9 36830373 36830606 -87245566 + (CATATA)n Simple_repeat Simple_repeat 1 235 0 8 866 189 121 0 0 chr9 36831910 36831943 -87244229 + (T)n Simple_repeat Simple_repeat 1 33 0 8 866 336 94 0 0 chr9 36832700 36832753 -87243419 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 866 314 319 193 1 chr9 36832762 36832952 -87243220 - B4A SINE B4 -36 256 54 8 866 236 319 14 14 chr9 36833212 36833282 -87242890 - tRNA-Ala-GCA tRNA tRNA -2 73 4 8 866 234 271 42 14 chr9 36833219 36833290 -87242882 - ID SINE ID -150 74 2 8 866 622 159 93 0 chr9 36833986 36834093 -87242079 + 5S rRNA rRNA 4 120 -1 8 866 807 168 21 14 chr9 36834093 36834238 -87241934 + B1_Mus1 SINE Alu 2 147 -1 8 866 934 269 101 48 chr9 36834270 36834832 -87241340 - L1MB3 LINE L1 -7 6176 5585 8 866 275 318 191 40 chr9 36835225 36835557 -87240615 + L2c LINE L2 3031 3387 0 8 866 226 316 86 47 chr9 36835668 36835828 -87240344 - L2c LINE L2 0 3387 3208 8 866 485 256 73 29 chr9 36837224 36837361 -87238811 - MER5A1 DNA MER1_type -23 143 1 8 866 442 291 107 6 chr9 36837652 36837811 -87238361 - MER5B DNA MER1_type 0 178 4 8 866 342 261 119 13 chr9 36838840 36838961 -87237211 + MIR SINE MIR 53 187 -81 8 866 189 0 0 0 chr9 36838970 36838991 -87237181 + (GA)n Simple_repeat Simple_repeat 1 21 0 8 866 429 233 93 0 chr9 36839580 36839666 -87236506 + RSINE1 SINE B4 3 96 -69 8 866 405 0 0 0 chr9 36839718 36839763 -87236409 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 866 413 242 50 12 chr9 36839780 36839883 -87236289 - B3A SINE B2 -75 123 13 8 866 687 183 117 159 chr9 36839946 36840036 -87236136 - B3 SINE B2 -9 207 102 8 866 1229 54 0 0 chr9 36840036 36840183 -87235989 + B1_Mus2 SINE Alu 1 147 0 8 866 687 183 117 159 chr9 36840183 36840306 -87235866 - B3 SINE B2 -115 101 4 8 866 981 281 73 62 chr9 36840656 36840874 -87235298 - MER63D DNA AcHobo -716 345 120 8 866 632 228 29 29 chr9 36840874 36841014 -87235158 - B1_Mus2 SINE Alu -7 140 1 9 866 981 281 73 62 chr9 36841014 36841136 -87235036 - MER63D DNA AcHobo -942 119 1 8 866 308 328 44 30 chr9 36842445 36842580 -87233592 - MIR SINE MIR -91 171 33 9 866 815 172 42 58 chr9 36842777 36842798 -87233374 - B2_Mm2 SINE B2 -7 188 168 9 866 1020 173 113 0 chr9 36842798 36842983 -87233189 - B3 SINE B2 -10 206 1 9 866 815 172 42 58 chr9 36842983 36843152 -87233020 - B2_Mm2 SINE B2 -28 167 1 9 866 395 328 128 6 chr9 36843635 36843807 -87232365 - MER3 DNA MER1_type -9 200 8 9 866 619 178 163 7 chr9 36843917 36844064 -87232108 + MER5A DNA MER1_type 1 170 -19 9 866 354 256 98 8 chr9 36844079 36844201 -87231971 - MIRb SINE MIR -31 237 105 9 866 192 267 22 0 chr9 36845026 36845071 -87231101 - MIRb SINE MIR -68 200 155 9 866 183 129 0 0 chr9 36845360 36845391 -87230781 + (TATG)n Simple_repeat Simple_repeat 2 32 0 9 866 231 114 0 0 chr9 36846385 36846420 -87229752 + (A)n Simple_repeat Simple_repeat 1 35 0 9 866 24 32 0 0 chr9 36846506 36846537 -87229635 + AT_rich Low_complexity Low_complexity 1 31 0 9 866 310 241 119 9 chr9 36847553 36847662 -87228510 + MIR3 SINE MIR 73 193 -15 9 866 198 370 12 12 chr9 36847982 36848064 -87228108 + L2a LINE L2 463 544 -2875 9 866 992 333 112 30 chr9 36848189 36849009 -87227163 + L2a LINE L2 710 1596 -1823 9 866 1489 256 124 44 chr9 36849105 36849603 -87226569 - Lx8 LINE L1 0 7473 6936 9 866 861 338 118 36 chr9 36849624 36850464 -87225708 + L2a LINE L2 1789 2697 -722 9 866 230 286 98 69 chr9 36850697 36850979 -87225193 + L2a LINE L2 3042 3335 -52 9 866 337 343 80 7 chr9 36851697 36851835 -87224337 + B1_Mus1 SINE Alu 1 148 0 9 866 473 337 32 16 chr9 36853800 36853987 -87222185 - B3A SINE B2 0 198 9 9 866 497 293 13 73 chr9 36854356 36854507 -87221665 + ID_B1 SINE B4 35 176 -48 9 866 225 298 22 67 chr9 36854494 36854584 -87221588 + MT2B LTR ERVL 149 234 -367 9 866 242 224 209 0 chr9 36854544 36854611 -87221561 + PB1D9 SINE Alu 38 118 -2 9 866 249 180 0 0 chr9 36854611 36854661 -87221511 + GA-rich Low_complexity Low_complexity 1 50 0 9 866 549 0 0 0 chr9 36854684 36854745 -87221427 + (GA)n Simple_repeat Simple_repeat 1 61 0 9 866 298 333 11 11 chr9 36855522 36855610 -87220562 + L2a LINE L2 3339 3426 0 9 866 229 130 22 0 chr9 36855909 36855955 -87220217 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 866 1224 54 0 0 chr9 36858312 36858459 -87217713 + B1_Mus2 SINE Alu 1 147 0 9 866 2209 204 7 22 chr9 36858557 36858968 -87217204 + MTD LTR MaLR 15 419 0 9 866 1281 57 34 17 chr9 36859169 36859348 -87216824 - B2_Mm2 SINE B2 -11 184 3 9 866 1381 266 73 34 chr9 36859352 36859760 -87216412 + MER44B DNA MER2_type 103 526 -24 9 866 229 255 0 0 chr9 36859992 36860039 -87216133 + ID4 SINE ID 2 48 -35 9 866 232 281 133 18 chr9 36862174 36862304 -87213868 - MIR SINE MIR -138 138 2 9 866 183 80 0 0 chr9 36864447 36864472 -87211700 + (GGGAA)n Simple_repeat Simple_repeat 1 25 0 9 866 186 43 0 0 chr9 36864598 36864621 -87211551 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 866 25 0 0 0 chr9 36867302 36867327 -87208845 + AT_rich Low_complexity Low_complexity 1 25 0 9 866 382 208 13 0 chr9 36867634 36867711 -87208461 - Lx8 LINE L1 -247 7226 7149 9 866 1192 54 0 13 chr9 36867716 36867865 -87208307 - B1_Mus1 SINE Alu 0 148 2 9 866 830 164 23 11 chr9 36867878 36868053 -87208119 - B3 SINE B2 -8 187 1 9 866 291 298 74 82 chr9 36868055 36868190 -87207982 - MIRb SINE MIR -115 153 16 9 866 198 0 0 0 chr9 36869773 36869795 -87206377 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 9 866 219 36 0 0 chr9 36870639 36870667 -87205505 + (A)n Simple_repeat Simple_repeat 1 28 0 9 866 306 303 0 0 chr9 36870762 36870828 -87205344 - ID2 SINE ID -14 69 4 9 866 259 287 78 61 chr9 36871187 36871302 -87204870 - MIR SINE MIR -59 149 33 9 866 828 289 121 26 chr9 36871305 36871611 -87204561 - MER2 DNA MER2_type -3 342 8 9 866 326 325 107 65 chr9 36872317 36872566 -87203606 - L2c LINE L2 0 3387 3106 9 866 225 272 62 80 chr9 36872717 36872829 -87203343 + MIRb SINE MIR 110 219 -49 9 866 474 329 34 0 chr9 36873443 36873589 -87202583 - RSINE1 SINE B4 -14 151 1 9 866 348 244 21 53 chr9 36873692 36873787 -87202385 + MTEa LTR MaLR 288 379 0 9 866 598 353 68 16 chr9 36874090 36874614 -87201558 + L2c LINE L2 2713 3275 -112 9 866 203 292 31 0 chr9 36874679 36874744 -87201428 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 9 866 727 185 7 29 chr9 36876582 36876721 -87199451 + B1_Mur1 SINE Alu 1 136 -13 9 866 270 0 0 0 chr9 36876721 36876751 -87199421 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 9 866 205 293 0 0 chr9 36876902 36876960 -87199212 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 866 1151 82 0 0 chr9 36877772 36877918 -87198254 - B1_Mus2 SINE Alu 0 147 2 9 866 337 139 181 0 chr9 36879764 36879836 -87196336 - B3A SINE B2 -113 85 1 9 866 339 25 0 0 chr9 36879881 36879921 -87196251 + (TCC)n Simple_repeat Simple_repeat 3 42 0 9 866 755 245 97 71 chr9 36880842 36881110 -87195062 + B4A SINE B4 2 276 -16 9 866 308 347 60 40 chr9 36881539 36881689 -87194483 - MIRc SINE MIR -3 265 113 9 866 198 0 0 0 chr9 36881921 36881943 -87194229 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 866 506 271 47 62 chr9 36883080 36883247 -87192925 - MER44B DNA MER2_type 0 550 385 9 866 1111 58 0 0 chr9 36883247 36883386 -87192786 + B1_Mus1 SINE Alu 1 139 -9 9 866 190 0 67 0 chr9 36883386 36883416 -87192756 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 866 506 271 47 62 chr9 36883416 36883440 -87192732 - MER44B DNA MER2_type -166 384 362 9 866 233 297 157 10 chr9 36883503 36883605 -87192567 - MER44B DNA MER2_type -433 117 1 9 866 335 197 0 53 chr9 36883686 36883761 -87192411 - ALINE LINE RTE -315 302 232 9 866 405 0 0 0 chr9 36884882 36884927 -87191245 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 866 486 264 55 35 chr9 36885020 36885165 -87191007 - B1_Mur1 SINE Alu -1 148 1 9 866 376 227 0 13 chr9 36886079 36886155 -87190017 - B1_Mur3 SINE Alu -8 141 67 9 866 281 208 101 25 chr9 36886361 36886440 -87189732 + MIRb SINE MIR 184 268 0 9 866 955 87 0 0 chr9 36886690 36886817 -87189355 + B1_Mus1 SINE Alu 13 139 -9 9 866 272 27 0 26 chr9 36886831 36886869 -87189303 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 9 866 1010 295 75 22 chr9 36888186 36888505 -87187667 + MER2 DNA MER2_type 9 344 -1 9 866 743 302 98 49 chr9 36888606 36889031 -87187141 + MLT1G3 LTR MaLR 129 593 -2 9 866 21 0 0 0 chr9 36891339 36891360 -87184812 + AT_rich Low_complexity Low_complexity 1 21 0 9 866 269 77 0 0 chr9 36891361 36891400 -87184772 - Lx9 LINE L1 -8 7636 7598 9 866 229 196 0 0 chr9 36891635 36891681 -87184491 + URR1B DNA MER1_type 143 188 -37 9 866 47 67 0 0 chr9 36891690 36891779 -87184393 + AT_rich Low_complexity Low_complexity 1 89 0 9 866 234 214 0 0 chr9 36891788 36891830 -87184342 + URR1B DNA MER1_type 184 225 0 9 866 211 311 0 16 chr9 36891927 36891989 -87184183 + L3 LINE CR1 3604 3664 -825 9 866 235 300 170 55 chr9 36892216 36892505 -87183667 + L3 LINE CR1 3707 4028 -461 9 866 551 295 45 29 chr9 36892525 36892759 -87183413 + MIR SINE MIR 28 262 0 9 866 202 83 83 0 chr9 36893188 36893236 -87182936 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 9 866 488 81 0 13 chr9 36893275 36893350 -87182822 + (TG)n Simple_repeat Simple_repeat 1 74 0 9 866 660 283 16 121 chr9 36893364 36893613 -87182559 - B4A SINE B4 -18 274 52 9 866 861 290 111 14 chr9 36893778 36894131 -87182041 + Lx8 LINE L1 7062 7448 -25 9 866 229 256 13 13 chr9 36894193 36894272 -87181900 + CT-rich Low_complexity Low_complexity 2 80 0 9 866 619 177 18 0 chr9 36894335 36894448 -87181724 - Lx7 LINE L1 -21 7675 7561 9 866 475 242 0 0 chr9 36894451 36894550 -87181622 + B3A SINE B2 1 99 -99 9 866 205 225 14 14 chr9 36894567 36894639 -87181533 + A-rich Low_complexity Low_complexity 4 75 0 9 866 225 0 0 0 chr9 36894642 36894667 -87181505 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 866 32 43 0 0 chr9 36894743 36894789 -87181383 + AT_rich Low_complexity Low_complexity 1 46 0 9 866 1063 218 36 14 chr9 36894789 36895012 -87181160 - Lx7 LINE L1 -311 7385 7158 9 866 273 75 0 0 chr9 36895014 36895054 -87181118 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 9 866 344 119 0 17 chr9 36895055 36895115 -87181057 + (TCCC)n Simple_repeat Simple_repeat 3 61 0 9 866 315 316 28 31 chr9 36895637 36895793 -87180379 + MIR3 SINE MIR 37 190 -18 9 866 195 268 18 18 chr9 36897118 36897175 -87178997 + L2 LINE L2 2795 2851 -568 9 866 231 325 16 86 chr9 36897195 36897323 -87178849 + Charlie8 DNA MER1_type 71 189 -2239 9 866 322 132 12 17 chr9 36898195 36898257 -87177915 - MIR SINE MIR 0 268 208 9 866 283 234 99 36 chr9 36898316 36898427 -87177745 - MER3 DNA MER1_type -16 193 76 9 866 254 282 121 18 chr9 36898430 36898549 -87177623 - MIRc SINE MIR -56 152 25 9 866 304 186 28 14 chr9 36898592 36898663 -87177509 + L1MB2 LINE L1 5710 5781 -402 9 866 1951 138 26 44 chr9 36898717 36899058 -87177114 - RLTR24 LTR ERV1 0 529 195 9 866 1143 89 6 6 chr9 36899064 36899222 -87176950 + MTA_Mm LTR MaLR 1 158 -238 9 866 888 211 119 65 chr9 36899333 36899611 -87176561 + L1MB2 LINE L1 5832 6124 -47 9 866 226 248 127 11 chr9 36900198 36900287 -87175885 + MIR3 SINE MIR 66 159 -49 9 866 383 274 56 9 chr9 36901176 36901283 -87174889 + PB1D7 SINE Alu 2 113 -7 9 866 366 259 68 6 chr9 36901509 36901664 -87174508 - RMER30 DNA MER1_type -2 200 1 9 866 442 285 116 0 chr9 36903076 36903248 -87172924 + Tigger15a DNA TcMar 86 277 -438 9 866 180 0 0 0 chr9 36904644 36904664 -87171508 + (TC)n Simple_repeat Simple_repeat 1 20 0 9 866 478 301 129 13 chr9 36905378 36905681 -87170491 - L1MC4a LINE L1 -1889 5993 5656 1 866 23 54 0 0 chr9 36905736 36905773 -87170399 + AT_rich Low_complexity Low_complexity 1 37 0 1 866 214 306 0 0 chr9 36905773 36905822 -87170350 - ID4 SINE ID 0 83 35 1 866 354 247 53 21 chr9 36906103 36906198 -87169974 + MIRb SINE MIR 50 147 -121 1 866 222 335 93 37 chr9 36906425 36906586 -87169586 - MIRb SINE MIR -81 187 18 1 866 216 344 23 23 chr9 36906767 36906895 -87169277 + BC1_Mm scRNA scRNA 16 143 -9 1 866 322 248 31 6 chr9 36907000 36907162 -87169010 + (TATATG)n Simple_repeat Simple_repeat 4 169 0 1 866 354 214 0 0 chr9 36907200 36907289 -87168883 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 866 230 217 32 117 chr9 36907674 36907768 -87168404 - MTD LTR MaLR -149 270 185 1 866 209 297 57 47 chr9 36907853 36907959 -87168213 - MIR3 SINE MIR -92 116 10 1 866 285 29 0 0 chr9 36908253 36908287 -87167885 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 866 269 320 125 30 chr9 36909579 36909779 -87166393 + MIRb SINE MIR 29 247 -21 1 866 202 238 0 0 chr9 36909941 36909983 -87166189 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 1 866 721 240 0 76 chr9 36910000 36910158 -87166014 - B4 SINE B4 -2 290 145 1 866 180 111 0 0 chr9 36910271 36910298 -87165874 + (CTA)n Simple_repeat Simple_repeat 1 27 0 1 866 545 183 139 0 chr9 36910363 36910478 -87165694 - B1_Mur3 SINE Alu -18 131 1 1 866 249 250 193 76 chr9 36910516 36910689 -87165483 - MIRm SINE MIR -27 241 38 1 866 212 162 0 0 chr9 36911269 36911306 -87164866 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 866 382 357 24 8 chr9 36912316 36912443 -87163729 + L2a LINE L2 3297 3425 -1 1 866 684 24 0 0 chr9 36912627 36912709 -87163463 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 866 1093 108 42 12 chr9 36913041 36913209 -87162963 + B2_Mm2 SINE B2 21 193 -2 1 866 1052 83 0 52 chr9 36913210 36913363 -87162809 + B1_Mus2 SINE Alu 2 146 -1 1 866 180 0 0 0 chr9 36913365 36913385 -87162787 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 866 192 40 0 0 chr9 36913523 36913548 -87162624 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 866 277 340 19 10 chr9 36913979 36914083 -87162089 - MIRb SINE MIR -65 203 99 1 866 512 292 9 0 chr9 36914263 36914376 -87161796 + MER81 DNA AcHobo 1 114 0 1 866 180 0 0 0 chr9 36915400 36915420 -87160752 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 866 417 328 0 0 chr9 36915520 36915654 -87160518 + (TG)n Simple_repeat Simple_repeat 2 135 0 1 866 263 304 167 98 chr9 36916232 36916414 -87159758 - B4 SINE B4 -23 269 71 1 866 1372 216 99 32 chr9 36916414 36916758 -87159414 - ORR1D2 LTR MaLR 0 370 4 1 866 263 304 167 98 chr9 36916758 36916790 -87159382 - B4 SINE B4 -222 70 40 1 866 369 0 0 0 chr9 36917540 36917581 -87158591 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 866 1168 177 28 28 chr9 36917834 36918049 -87158123 + MTC LTR MaLR 5 219 -202 1 866 5347 203 31 11 chr9 36918060 36919102 -87157070 + Lx5 LINE L1 5984 7045 -5 1 866 1029 194 43 14 chr9 36919144 36919360 -87156812 + MTC LTR MaLR 179 413 -8 1 866 536 280 53 53 chr9 36919421 36919572 -87156600 + RSINE1 SINE B4 9 159 -6 1 866 2535 156 104 53 chr9 36919588 36920116 -87156056 - RMER4B LTR ERVK -17 568 14 1 866 435 272 39 0 chr9 36921149 36921252 -87154920 - B1_Mur1 SINE Alu -29 120 14 1 866 26 30 0 0 chr9 36921820 36921853 -87154319 + AT_rich Low_complexity Low_complexity 1 33 0 1 866 1115 228 5 9 chr9 36923078 36923295 -87152877 - B3 SINE B2 0 216 1 1 866 218 371 29 0 chr9 36923435 36923505 -87152667 - ID2 SINE ID -9 74 3 1 866 214 253 24 0 chr9 36923845 36923928 -87152244 + GA-rich Low_complexity Low_complexity 3 87 0 1 866 278 244 102 68 chr9 36924650 36924738 -87151434 + MER3 DNA MER1_type 86 176 -33 1 866 2187 24 0 0 chr9 36924892 36925141 -87151031 - L1Md_A LINE L1 0 6582 6334 1 866 290 269 95 56 chr9 36925268 36925394 -87150778 - MIRm SINE MIR -112 164 34 1 866 1322 157 4 22 chr9 36925925 36926153 -87150019 + URR1B DNA MER1_type 2 225 0 1 866 1089 266 66 34 chr9 36926650 36926998 -87149174 + MTE2a LTR MaLR 1 372 -7 1 866 388 222 407 75 chr9 36927004 36927270 -87148902 + MLT1A1 LTR MaLR 24 377 -31 1 866 261 380 15 37 chr9 36927450 36927584 -87148588 + MIRb SINE MIR 16 146 -122 1 866 497 283 209 5 chr9 36927620 36927826 -87148346 + MIR SINE MIR 14 261 -1 1 866 228 325 11 11 chr9 36927835 36927922 -87148250 + MIRb SINE MIR 173 259 -9 1 866 273 376 7 23 chr9 36928675 36928828 -87147344 - MIRb SINE MIR -27 241 86 1 866 713 93 9 0 chr9 36928947 36929054 -87147118 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 866 848 179 175 25 chr9 36929054 36929294 -87146878 + MTD LTR MaLR 144 419 0 1 866 193 326 192 8 chr9 36930311 36930441 -87145731 + MIRb SINE MIR 115 268 0 1 866 302 330 49 49 chr9 36931545 36931730 -87144442 - HAL1-3A_ME LINE L1 -727 2131 1947 1 866 227 309 36 24 chr9 36931826 36931909 -87144263 - RMER4B LTR ERVK -44 541 458 1 866 378 0 0 0 chr9 36931909 36931951 -87144221 + (GAA)n Simple_repeat Simple_repeat 3 44 0 1 866 552 149 0 0 chr9 36931951 36932045 -87144127 + (GA)n Simple_repeat Simple_repeat 2 95 0 1 866 235 261 147 41 chr9 36932045 36932182 -87143990 + MIRb SINE MIR 6 147 -129 1 866 329 363 0 61 chr9 36932240 36932372 -87143800 - L2c LINE L2 -9 3378 3255 1 866 477 264 9 0 chr9 36933014 36933124 -87143048 - MER94 DNA AcHobo -2 132 22 1 866 643 167 0 0 chr9 36933549 36933651 -87142521 + B1_Mus2 SINE Alu 32 133 -14 1 866 219 69 0 0 chr9 36933651 36933680 -87142492 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 866 237 270 162 74 chr9 36934718 36934866 -87141306 + MIRb SINE MIR 102 262 -6 1 866 498 261 17 180 chr9 36935043 36935218 -87140954 + L1MB4 LINE L1 4021 4182 -1964 1 866 1145 42 20 20 chr9 36935218 36935364 -87140808 + B1_Mus1 SINE Alu 2 147 -1 1 866 498 261 17 180 chr9 36935364 36935533 -87140639 + L1MB4 LINE L1 4183 4309 -1837 1 866 1674 274 92 48 chr9 36935548 36936424 -87139748 + L1MA4 LINE L1 4476 5395 -905 1 866 734 189 28 0 chr9 36936424 36936555 -87139617 + B1_Mus1 SINE Alu 2 136 -12 1 866 285 29 0 0 chr9 36936555 36936589 -87139583 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 866 734 189 28 0 chr9 36936589 36936600 -87139572 + B1_Mus1 SINE Alu 137 147 -1 1 866 1674 269 57 65 chr9 36936600 36937233 -87138939 + L1MA4 LINE L1 5396 6029 -271 1 866 638 305 44 0 chr9 36937314 36937540 -87138632 + L1MB4 LINE L1 4304 4539 -1601 1 866 1165 35 14 14 chr9 36937540 36937684 -87138488 + B1_Mus2 SINE Alu 2 145 -2 1 866 351 179 0 0 chr9 36937685 36937752 -87138420 + GA-rich Low_complexity Low_complexity 1 67 0 1 866 850 292 54 11 chr9 36937849 36938129 -87138043 + B4A SINE B4 1 292 0 1 866 1676 265 75 67 chr9 36938219 36939412 -87136760 + L1MB4 LINE L1 4600 5796 -384 1 866 252 254 0 0 chr9 36939424 36939479 -87136693 + L1MB4 LINE L1 5941 5995 -185 1 866 255 227 15 0 chr9 36939585 36939651 -87136521 + L1MB4 LINE L1 6091 6157 -23 1 866 430 256 0 0 chr9 36939925 36940007 -87136165 + PB1D9 SINE Alu 9 90 -30 1 866 30 0 0 0 chr9 36940013 36940043 -87136129 + AT_rich Low_complexity Low_complexity 1 30 0 1 866 351 0 0 0 chr9 36940532 36940571 -87135601 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 866 369 0 0 0 chr9 36940571 36940611 -87135561 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 866 313 242 72 21 chr9 36941497 36941594 -87134578 + MIRm SINE MIR 86 187 -89 1 866 344 220 109 10 chr9 36942317 36942418 -87133754 - PB1D10 SINE Alu -2 115 5 1 866 281 102 0 39 chr9 36942432 36942483 -87133689 + (CCCCCT)n Simple_repeat Simple_repeat 2 50 0 1 866 911 252 0 42 chr9 36942539 36942741 -87133431 - B4A SINE B4 -6 286 94 1 866 1389 188 136 79 chr9 36942741 36943094 -87133078 + ORR1D1 LTR MaLR 2 374 0 1 866 911 252 0 42 chr9 36943094 36943106 -87133066 - B4A SINE B4 -199 93 82 1 866 180 325 143 17 chr9 36944250 36944369 -87131803 - MIRc SINE MIR -14 254 121 1 866 405 0 0 0 chr9 36945360 36945405 -87130767 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 866 414 0 0 0 chr9 36945405 36945450 -87130722 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 866 207 191 0 0 chr9 36945680 36945727 -87130445 + T-rich Low_complexity Low_complexity 5 51 0 1 866 250 317 37 46 chr9 36945868 36945977 -87130195 + MIRc SINE MIR 96 203 -65 1 866 1124 54 0 7 chr9 36945988 36946137 -87130035 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 1 866 755 164 7 29 chr9 36946163 36946301 -87129871 - B1_Mur3 SINE Alu -13 136 2 1 866 354 292 94 12 chr9 36946386 36946556 -87129616 - MIRb SINE MIR -81 187 4 1 866 314 324 88 14 chr9 36946791 36946985 -87129187 - MIR3 SINE MIR -1 207 3 1 866 324 0 0 0 chr9 36947756 36947792 -87128380 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 866 573 106 0 0 chr9 36947792 36947896 -87128276 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 866 211 373 60 36 chr9 36947898 36948065 -87128107 - MIRb SINE MIR -93 175 5 1 866 27 0 0 0 chr9 36949376 36949403 -87126769 + AT_rich Low_complexity Low_complexity 1 27 0 1 866 247 179 15 15 chr9 36950316 36950384 -87125788 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 866 261 0 0 0 chr9 36950609 36950638 -87125534 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 866 378 0 0 0 chr9 36952231 36952273 -87123899 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 866 261 83 0 0 chr9 36953954 36953990 -87122182 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 866 203 232 36 0 chr9 36954499 36954555 -87121617 + (CCTCG)n Simple_repeat Simple_repeat 5 62 0 1 866 244 136 45 11 chr9 36954590 36954679 -87121493 + CT-rich Low_complexity Low_complexity 2 93 0 1 866 189 0 0 0 chr9 36954764 36954785 -87121387 + (CCG)n Simple_repeat Simple_repeat 2 22 0 1 866 318 290 0 0 chr9 36954912 36955012 -87121160 + C-rich Low_complexity Low_complexity 1 100 0 1 866 342 0 0 0 chr9 36957370 36957408 -87118764 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 866 970 137 0 0 chr9 36957586 36957732 -87118440 + B1_Mus1 SINE Alu 2 147 -1 1 866 913 295 52 55 chr9 36957774 36958122 -87118050 - MLT1B LTR MaLR -43 347 1 1 866 2066 106 26 26 chr9 36958435 36958744 -87117428 + RLTR27 LTR ERVK 1 309 0 1 866 518 267 30 50 chr9 36958829 36959030 -87117142 + L1MA5 LINE L1 5763 5959 -341 1 866 263 222 0 0 chr9 36959051 36959105 -87117067 + L1MA5 LINE L1 6238 6291 -9 1 866 1909 186 24 92 chr9 36959116 36959209 -87116963 - ORR1B1 LTR MaLR -8 386 301 1 866 1289 98 22 0 chr9 36959209 36959392 -87116780 - B2_Mm1t SINE B2 -5 188 2 1 866 1909 186 24 92 chr9 36959392 36959712 -87116460 - ORR1B1 LTR MaLR -94 300 1 1 866 860 278 37 9 chr9 36959747 36959961 -87116211 + ID_B1 SINE B4 1 220 -4 1 866 219 209 10 52 chr9 36960052 36960148 -87116024 + CT-rich Low_complexity Low_complexity 2 93 0 1 866 580 298 53 31 chr9 36960474 36960699 -87115473 + MIRb SINE MIR 30 259 -9 1 866 603 0 0 0 chr9 36960851 36960918 -87115254 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 1 866 515 269 44 81 chr9 36961438 36961451 -87114721 + CYRA11_Mm Unknown Y-chromosome 160 183 -434 1 866 928 132 0 0 chr9 36961451 36961587 -87114585 - URR1B DNA MER1_type 0 225 90 1 866 515 269 44 81 chr9 36961587 36961709 -87114463 + CYRA11_Mm Unknown Y-chromosome 184 420 -197 1 866 357 281 101 14 chr9 36961890 36962038 -87114134 + MER33 DNA MER1_type 2 162 -162 1 866 1227 48 0 0 chr9 36962039 36962185 -87113987 + B1_Mus2 SINE Alu 2 147 0 1 866 25 0 0 0 chr9 36962185 36962210 -87113962 + AT_rich Low_complexity Low_complexity 1 25 0 1 867 960 24 24 0 chr9 36962323 36962450 -87113722 + (GAAAA)n Simple_repeat Simple_repeat 2 131 0 1 867 241 66 48 32 chr9 36962487 36962550 -87113622 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 867 803 20 20 0 chr9 36962554 36962654 -87113518 + (TCTCCC)n Simple_repeat Simple_repeat 1 102 0 1 867 271 206 48 0 chr9 36962664 36962727 -87113445 + ID4_ SINE ID 2 67 -16 1 867 287 262 104 24 chr9 36962734 36962859 -87113313 + MER33 DNA MER1_type 182 316 -8 1 867 390 147 0 0 chr9 36963181 36963249 -87112923 + (TCC)n Simple_repeat Simple_repeat 2 69 0 1 867 396 0 0 0 chr9 36966485 36966529 -87109643 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 867 275 339 0 75 chr9 36967300 36967434 -87108738 - L2b LINE L2 -6 3369 3246 1 867 236 357 20 6 chr9 36967623 36967788 -87108384 - MIR SINE MIR -98 178 13 1 867 192 304 133 74 chr9 36968128 36968263 -87107909 + L2a LINE L2 3278 3420 -6 1 867 1246 168 282 3 chr9 36969128 36969415 -87106757 - ORR1B2 LTR MaLR 0 367 1 1 867 258 265 0 0 chr9 36969556 36969605 -87106567 - ID SINE ID -141 83 35 1 867 253 274 97 0 chr9 36969605 36969617 -87106555 - ID4_ SINE ID 0 82 16 1 867 411 56 0 0 chr9 36969970 36970024 -87106148 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 867 325 295 3 0 chr9 36971244 36971343 -87104829 + PB1D10 SINE Alu 17 118 -2 1 867 5774 83 68 4 chr9 36971483 36973027 -87103145 - L1VL2 LINE L1 -1789 1826 173 1 867 933 125 0 0 chr9 36973056 36973192 -87102980 + B1_Mus1 SINE Alu 8 143 -5 1 867 516 178 56 0 chr9 36973236 36973343 -87102829 + ORR1B1 LTR MaLR 46 158 -236 1 867 287 320 90 92 chr9 36973531 36974058 -87102114 + HAL1 LINE L1 1457 1989 -518 1 867 315 0 0 0 chr9 36974058 36974093 -87102079 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 867 1170 58 0 0 chr9 36974093 36974231 -87101941 - B1_Mus1 SINE Alu -9 139 2 1 867 287 320 90 92 chr9 36974231 36974252 -87101920 + HAL1 LINE L1 1990 2002 -505 1 867 261 119 0 0 chr9 36974252 36974294 -87101878 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 867 287 320 90 92 chr9 36974294 36974630 -87101542 + HAL1 LINE L1 2003 2339 -168 1 867 383 308 67 44 chr9 36974778 36974958 -87101214 + B3 SINE B2 1 184 -11 1 867 1028 141 38 33 chr9 36974982 36975165 -87101007 + B2_Mm2 SINE B2 2 185 -10 1 867 306 0 0 0 chr9 36975168 36975202 -87100970 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 867 426 236 28 28 chr9 36975639 36975748 -87100424 + PB1D10 SINE Alu 4 112 -5 1 867 335 171 13 0 chr9 36975816 36975892 -87100280 + GA-rich Low_complexity Low_complexity 2 78 0 1 867 632 332 60 79 chr9 36975980 36976398 -87099774 + MT2A LTR ERVL 4 413 -120 1 867 398 302 166 49 chr9 36976680 36976945 -87099227 - MLT1I LTR MaLR -24 387 92 1 867 846 189 155 16 chr9 36976990 36977184 -87098988 + Lx8 LINE L1 6927 7147 -326 1 867 381 191 296 8 chr9 36977182 36977314 -87098858 + Lx8 LINE L1 7301 7470 -3 1 867 1335 202 64 34 chr9 36977326 36977654 -87098518 + Lx8 LINE L1 7136 7473 0 1 867 600 288 14 0 chr9 36977720 36977859 -87098313 + RSINE1 SINE B4 2 142 -23 1 867 315 265 0 56 chr9 36977899 36977971 -87098201 + B4A SINE B4 213 280 -12 1 867 866 198 45 28 chr9 36978374 36978551 -87097621 - B3A SINE B2 -18 180 1 1 867 717 192 69 17 chr9 36978558 36978733 -87097439 + L1MA5 LINE L1 6117 6300 0 1 867 493 188 9 26 chr9 36978721 36978836 -87097336 + L1MA5 LINE L1 6165 6277 -23 1 867 401 0 0 20 chr9 36978851 36978901 -87097271 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 867 326 261 14 0 chr9 36978909 36978978 -87097194 - B4A SINE B4 -4 288 219 1 867 995 251 21 45 chr9 36978999 36979241 -87096931 - B4A SINE B4 -52 240 5 1 867 856 206 0 0 chr9 36979267 36979413 -87096759 - B1_Mur1 SINE Alu -2 147 2 1 867 215 263 18 0 chr9 36979422 36979479 -87096693 + MIR3 SINE MIR 131 188 -20 1 867 525 271 55 14 chr9 36980289 36980435 -87095737 - MIR SINE MIR -90 172 21 1 867 192 277 0 0 chr9 36981880 36981927 -87094245 + MIR3 SINE MIR 114 160 -48 1 867 197 224 15 134 chr9 36981969 36982036 -87094136 - L2c LINE L2 -2 3385 3327 1 867 366 202 76 119 chr9 36982274 36982392 -87093780 + B1_Mur2 SINE Alu 36 148 -1 1 867 498 294 39 8 chr9 36982441 36982568 -87093604 + MLT1B LTR MaLR 205 335 -55 1 867 725 276 40 65 chr9 36983145 36983393 -87092779 - MIR SINE MIR -2 260 19 1 867 644 218 6 0 chr9 36983409 36983583 -87092589 + GA-rich Low_complexity Low_complexity 3 177 0 1 867 244 328 24 63 chr9 36983589 36983716 -87092456 - MIR SINE MIR -128 134 13 1 867 187 351 138 38 chr9 36985703 36985863 -87090309 + MIRm SINE MIR 2 177 -99 1 867 343 284 48 19 chr9 36987216 36987320 -87088852 - PB1D10 SINE Alu -10 107 1 1 867 659 298 116 23 chr9 36988204 36988506 -87087666 - Tigger7 DNA MER2_type -2151 340 11 1 867 414 121 0 0 chr9 36988643 36988709 -87087463 + (CATA)n Simple_repeat Simple_repeat 2 67 0 1 867 207 111 28 0 chr9 36988845 36988881 -87087291 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 1 867 642 252 0 59 chr9 36989115 36989267 -87086905 - B1F SINE Alu -6 143 1 1 867 184 310 0 17 chr9 36989359 36989418 -87086754 + L3 LINE CR1 2828 2885 -1604 1 867 417 297 10 10 chr9 36989727 36989829 -87086343 - ID_B1 SINE B4 -116 108 7 1 867 24 0 0 0 chr9 36989839 36989863 -87086309 + AT_rich Low_complexity Low_complexity 1 24 0 1 867 281 309 0 0 chr9 36990016 36990084 -87086088 + ID4_ SINE ID 3 70 -13 1 867 252 0 0 0 chr9 36990317 36990345 -87085827 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 867 882 146 22 0 chr9 36990345 36990482 -87085690 - B1_Mur4 SINE Alu -10 140 1 1 867 649 230 14 21 chr9 36990522 36990664 -87085508 - B1_Mus1 SINE Alu -7 141 1 1 867 27 29 0 0 chr9 36991183 36991217 -87084955 + AT_rich Low_complexity Low_complexity 1 34 0 1 867 319 263 0 50 chr9 36991226 36991326 -87084846 - BC1_Mm scRNA scRNA -49 103 9 1 867 615 170 172 28 chr9 36991469 36991614 -87084558 - B2_Mm2 SINE B2 -7 188 23 1 867 413 384 39 91 chr9 36991628 36992146 -87084026 + L1M5 LINE L1 4342 4832 -1314 1 867 295 350 39 15 chr9 36992268 36992471 -87083701 + L1M5 LINE L1 4981 5188 -958 1 867 311 254 101 7 chr9 36992529 36992668 -87083504 + L1M5 LINE L1 5274 5425 -769 1 867 558 0 0 0 chr9 36993329 36993391 -87082781 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1 867 408 20 0 0 chr9 36993787 36993836 -87082336 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 867 474 70 0 0 chr9 36993838 36993909 -87082263 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 1 867 1298 103 38 0 chr9 36994699 36994884 -87081288 - B2_Mm2 SINE B2 -3 192 1 1 867 381 243 0 0 chr9 36995021 36995095 -87081077 - PB1D10 SINE Alu -11 106 33 1 867 1248 21 0 7 chr9 36995377 36995521 -87080651 + B1_Mus1 SINE Alu 5 147 -1 1 867 736 335 141 78 chr9 36995648 36996470 -87079702 + HAL1 LINE L1 401 1274 -1233 1 867 1784 181 105 6 chr9 36996553 36996708 -87079464 + ORR1C2 LTR MaLR 7 170 -214 1 867 462 83 0 0 chr9 36996708 36996780 -87079392 + (TCTCTG)n Simple_repeat Simple_repeat 2 73 0 1 867 1784 181 105 6 chr9 36996780 36996968 -87079204 + ORR1C2 LTR MaLR 171 383 -1 1 867 555 345 27 54 chr9 36996974 36997234 -87078938 + B4A SINE B4 26 278 -14 1 867 221 200 60 0 chr9 36997267 36997317 -87078855 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 1 867 889 250 88 121 chr9 36997452 36997939 -87078233 + L1MB7 LINE L1 5699 6169 -15 1 867 454 200 135 48 chr9 36998067 36998193 -87077979 + B1_Mus2 SINE Alu 1 137 -10 1 867 305 301 0 12 chr9 36998224 36998308 -87077864 + ID4_ SINE ID 1 83 0 1 867 683 160 19 6 chr9 36998562 36998719 -87077453 + GA-rich Low_complexity Low_complexity 2 160 0 1 867 680 224 15 0 chr9 36999137 36999271 -87076901 + B1_Mur1 SINE Alu 2 137 -12 1 867 369 0 0 0 chr9 36999271 36999312 -87076860 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 867 823 50 208 0 chr9 36999312 36999432 -87076740 + B1_Mus1 SINE Alu 2 146 -2 1 867 198 0 0 0 chr9 36999438 36999460 -87076712 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 1 867 485 291 0 0 chr9 36999633 36999750 -87076422 - PB1D10 SINE Alu 0 117 1 1 867 842 206 54 27 chr9 36999781 36999966 -87076206 - B3 SINE B2 0 216 27 1 867 660 255 43 12 chr9 37000001 37000164 -87076008 - ORR1D1 LTR MaLR -40 334 167 1 867 213 39 0 0 chr9 37000168 37000194 -87075978 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 2 867 576 280 8 0 chr9 37000226 37000351 -87075821 - ID_B1 SINE B4 -9 215 90 3 867 883 177 7 20 chr9 37000559 37000709 -87075463 + B1_Mur3 SINE Alu 2 149 0 4 867 358 275 68 84 chr9 37001005 37001122 -87075050 - MIR SINE MIR -43 225 96 5 867 1080 82 0 0 chr9 37001122 37001257 -87074915 + B1_Mus1 SINE Alu 1 135 -13 6 867 681 36 0 0 chr9 37001258 37001342 -87074830 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 7 867 358 263 64 90 chr9 37001342 37001431 -87074741 - MIR SINE MIR -167 95 8 5 867 389 53 0 18 chr9 37002425 37002482 -87073690 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 8 867 228 67 0 0 chr9 37002483 37002513 -87073659 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 9 867 569 281 7 0 chr9 37002542 37002688 -87073484 - ID_B1 SINE B4 0 224 78 1 867 260 180 16 0 chr9 37003051 37003096 -87073076 + CT-rich Low_complexity Low_complexity 17 62 0 1 867 1141 94 0 22 chr9 37003096 37003280 -87072892 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 867 260 180 16 0 chr9 37003280 37003295 -87072877 + polypyrimidine Low_complexity Low_complexity 2 16 0 1 867 717 73 0 0 chr9 37003295 37003391 -87072781 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 1 867 1171 82 0 19 chr9 37003391 37003553 -87072619 - B2_Mm2 SINE B2 -36 159 1 1 867 193 255 54 18 chr9 37004207 37004263 -87071909 + L2a LINE L2 3368 3425 -1 1 867 790 355 135 29 chr9 37005679 37006442 -87069730 + L3 LINE CR1 3545 4388 -101 1 867 569 258 24 0 chr9 37007473 37007597 -87068575 + RSINE1 SINE B4 15 141 -24 1 867 633 212 1 4 chr9 37007634 37007766 -87068406 - B1_Mur2 SINE Alu -21 129 1 1 867 295 310 0 41 chr9 37007773 37007894 -87068278 - PB1D7 SINE Alu -2 118 3 2 867 431 269 55 90 chr9 37008579 37008779 -87067393 - B3A SINE B2 -4 194 2 2 867 341 189 62 62 chr9 37009016 37009112 -87067060 + L2a LINE L2 2816 2911 -508 2 867 192 198 239 23 chr9 37009166 37009254 -87066918 + L2a LINE L2 3074 3180 -246 2 867 3289 189 57 96 chr9 37009346 37010238 -87065934 + RMER17B LTR ERVK 1 775 -183 2 867 208 356 121 9 chr9 37010368 37010484 -87065688 + L2a LINE L2 3279 3407 -19 2 867 2296 146 64 11 chr9 37010524 37010898 -87065274 - ORR1B1 LTR MaLR 0 394 1 2 867 207 0 0 0 chr9 37011062 37011085 -87065087 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 867 236 321 99 76 chr9 37012395 37012567 -87063605 + ORR1E LTR MaLR 79 254 -105 2 867 483 290 21 21 chr9 37013095 37013236 -87062936 - B1F1 SINE Alu 0 149 9 2 867 448 301 69 11 chr9 37013270 37013445 -87062727 - MER58B DNA MER1_type -12 329 145 2 867 690 142 38 119 chr9 37013537 37013697 -87062475 - B1_Mur3 SINE Alu -2 147 1 2 867 1463 134 14 5 chr9 37013720 37013937 -87062235 - URR1B DNA MER1_type 0 225 7 3 867 652 236 87 68 chr9 37013721 37013985 -87062187 + CYRA11_Mm Unknown Y-chromosome 172 440 -177 3 867 342 329 35 0 chr9 37013949 37014034 -87062138 - PB1D7 SINE Alu -31 89 2 3 867 345 299 20 20 chr9 37014384 37014483 -87061689 + B3 SINE B2 115 213 -3 3 867 803 154 23 0 chr9 37014790 37014920 -87061252 + B1_Mur2 SINE Alu 1 133 -16 3 867 210 192 0 0 chr9 37014937 37014989 -87061183 + GA-rich Low_complexity Low_complexity 1 52 0 3 867 450 239 8 57 chr9 37016338 37016462 -87059710 - PB1D7 SINE Alu -1 119 2 3 867 465 231 7 39 chr9 37016523 37016664 -87059508 + B1_Mur4 SINE Alu 1 133 -14 3 867 599 126 193 0 chr9 37016847 37016966 -87059206 + B1_Mus1 SINE Alu 7 148 0 3 867 192 40 0 0 chr9 37017030 37017055 -87059117 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 867 464 221 114 0 chr9 37017436 37017567 -87058605 + ID_B1 SINE B4 6 151 -73 4 867 215 262 0 143 chr9 37017569 37017667 -87058505 + B4A SINE B4 1 84 -208 4 867 367 267 27 0 chr9 37017594 37017669 -87058503 + B3A SINE B2 86 162 -36 4 867 516 68 0 0 chr9 37017670 37017743 -87058429 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 867 184 305 17 17 chr9 37018106 37018166 -87058006 + L2 LINE L2 2706 2765 -654 4 867 273 305 104 9 chr9 37018285 37018391 -87057781 - PB1D10 SINE Alu -1 116 1 4 867 704 179 262 0 chr9 37018429 37018597 -87057575 + B3 SINE B2 5 216 0 4 867 952 225 130 16 chr9 37018903 37019156 -87057016 - B4 SINE B4 -8 284 3 4 867 205 176 0 0 chr9 37019158 37019192 -87056980 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 4 867 1368 92 11 0 chr9 37019209 37019394 -87056778 - B2_Mm1t SINE B2 -6 187 1 4 867 217 0 219 0 chr9 37019654 37019727 -87056445 + (CCCTG)n Simple_repeat Simple_repeat 5 93 0 5 867 192 97 0 0 chr9 37020009 37020040 -87056132 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 867 22 0 0 0 chr9 37020242 37020264 -87055908 + AT_rich Low_complexity Low_complexity 1 22 0 5 867 1696 254 134 38 chr9 37020356 37020909 -87055263 + MER20B DNA MER1_type 8 613 -170 5 867 594 366 57 29 chr9 37020915 37021368 -87054804 - L1M5 LINE L1 -1156 4990 4525 5 867 1211 98 23 0 chr9 37021619 37021792 -87054380 + B2_Mm2 SINE B2 1 177 -18 5 867 540 45 0 0 chr9 37021793 37021860 -87054312 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 867 1265 107 16 21 chr9 37022007 37022198 -87053974 - B2_Mm2 SINE B2 -5 190 1 5 867 245 282 45 0 chr9 37022294 37022404 -87053768 - L1ME3A LINE L1 -12 6161 6047 5 867 231 276 111 28 chr9 37022441 37022549 -87053623 - L1ME3A LINE L1 -206 5956 5840 5 867 346 235 93 21 chr9 37022601 37022754 -87053418 - L1ME3A LINE L1 -683 5490 5328 5 867 259 276 46 0 chr9 37022988 37023075 -87053097 - L1MB2 LINE L1 -9 6162 6072 5 867 913 230 106 12 chr9 37023525 37023780 -87052392 - B4A SINE B4 -11 281 3 6 867 226 293 106 48 chr9 37024534 37024638 -87051534 + MLT1D LTR MaLR 21 130 -375 6 867 276 312 100 19 chr9 37024665 37024825 -87051347 + MLT1D LTR MaLR 261 433 -72 6 867 3157 14 0 0 chr9 37024909 37025255 -87050917 - ORR1A0 LTR MaLR 0 346 1 6 867 187 244 44 0 chr9 37025328 37025373 -87050799 + L4 LINE RTE 1723 1769 -260 6 867 451 283 145 10 chr9 37027630 37027823 -87048349 - MIRb SINE MIR -2 266 48 6 867 947 154 7 0 chr9 37027841 37027984 -87048188 + B1_Mus1 SINE Alu 2 145 -3 6 867 791 298 108 48 chr9 37028797 37029356 -87046816 - MLT1D LTR MaLR 0 627 11 6 867 183 204 0 0 chr9 37029825 37029879 -87046293 + CT-rich Low_complexity Low_complexity 2 55 0 6 867 515 256 72 14 chr9 37031062 37031201 -87044971 - B1F SINE Alu -2 147 1 6 867 234 291 25 151 chr9 37031201 37031336 -87044836 - MT2B LTR ERVL -442 159 55 6 867 349 265 30 20 chr9 37031239 37031339 -87044833 - PB1D10 SINE Alu -16 101 1 7 867 1323 161 13 5 chr9 37031762 37031986 -87044186 - URR1A DNA MER1_type 0 226 1 7 867 630 86 0 0 chr9 37032087 37032168 -87044004 + B1_Mus2 SINE Alu 59 139 -8 7 867 310 246 107 8 chr9 37032191 37032453 -87043719 - RMER17D LTR ERVK -416 473 186 7 867 972 114 108 6 chr9 37033540 37033707 -87042465 + B2_Mm2 SINE B2 2 185 -10 7 867 233 347 162 10 chr9 37035205 37035403 -87040769 - MIR SINE MIR -34 228 1 7 867 727 245 179 40 chr9 37035731 37035982 -87040190 - B4 SINE B4 -3 289 4 7 867 607 226 256 14 chr9 37036050 37036257 -87039915 - MLT1D LTR MaLR -1 504 248 7 867 181 302 93 0 chr9 37037465 37037551 -87038621 - MIR SINE MIR -69 193 100 7 867 192 213 0 113 chr9 37037792 37037845 -87038327 - L2b LINE L2 -23 3352 3306 7 867 264 77 0 0 chr9 37038787 37038826 -87037346 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 8 867 189 107 0 0 chr9 37039923 37039951 -87036221 + (CAGGG)n Simple_repeat Simple_repeat 1 28 0 8 867 620 208 7 37 chr9 37042203 37042339 -87033833 - ID_B1 SINE B4 0 224 97 8 867 297 0 0 0 chr9 37043799 37043832 -87032340 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 867 300 111 256 12 chr9 37045962 37046044 -87030128 + Lx4A LINE L1 6957 7058 0 8 867 237 317 24 32 chr9 37046346 37046470 -87029702 + MER20 DNA MER1_type 93 215 -4 8 867 211 208 41 20 chr9 37048225 37048274 -87027898 + L2c LINE L2 3276 3325 -62 8 867 504 0 0 0 chr9 37049695 37049751 -87026421 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 867 234 318 0 29 chr9 37050316 37050384 -87025788 + tRNA-Ala-GCA tRNA tRNA 1 66 -9 8 867 553 222 0 0 chr9 37050755 37050854 -87025318 + PB1D10 SINE Alu 10 108 -9 8 867 181 310 75 30 chr9 37052170 37052303 -87023869 - L2 LINE L2 -436 2983 2845 9 867 192 40 0 0 chr9 37055371 37055396 -87020776 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 867 1100 103 6 6 chr9 37055400 37055557 -87020615 - B2_Mm2 SINE B2 -38 157 1 9 867 263 255 169 49 chr9 37055674 37055826 -87020346 + MIRb SINE MIR 17 191 -77 9 867 609 174 73 16 chr9 37056703 37056826 -87019346 + B1_Mus2 SINE Alu 12 141 -6 9 867 327 104 0 0 chr9 37056826 37056874 -87019298 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 867 258 313 119 0 chr9 37056900 37057014 -87019158 - MIRc SINE MIR -65 203 74 9 867 345 348 26 0 chr9 37057049 37057164 -87019008 + MIRb SINE MIR 16 133 -135 9 867 223 309 36 24 chr9 37057328 37057411 -87018761 - MIRb SINE MIR -62 206 123 9 867 243 0 0 0 chr9 37057730 37057757 -87018415 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 867 353 222 698 8 chr9 37058298 37058423 -87017749 + ID_B1 SINE B4 8 218 -6 1 867 326 289 0 13 chr9 37059004 37059081 -87017091 - ID4 SINE ID -5 78 3 1 867 477 214 18 55 chr9 37059085 37059194 -87016978 - PB1D10 SINE Alu -1 116 12 1 867 1208 166 49 0 chr9 37059443 37059648 -87016524 - B3 SINE B2 0 216 2 1 867 830 301 99 56 chr9 37059942 37060427 -87015745 + MER31-int LTR ERV1 3535 4040 -896 1 867 246 62 0 0 chr9 37060925 37060957 -87015215 + (A)n Simple_repeat Simple_repeat 1 32 0 1 867 807 260 98 26 chr9 37060957 37061222 -87014950 + B4 SINE B4 6 289 -3 1 867 302 286 111 53 chr9 37061273 37061517 -87014655 + MER31-int LTR ERV1 4082 4339 -597 1 867 419 174 30 76 chr9 37061644 37061775 -87014397 - L1MB3 LINE L1 0 6183 6059 1 867 234 265 109 17 chr9 37061797 37061916 -87014256 + LTR37A LTR ERV1 284 413 -13 1 867 903 265 50 32 chr9 37064184 37064465 -87011707 + B4A SINE B4 1 286 -6 1 867 245 302 42 16 chr9 37065842 37065962 -87010210 + MIR SINE MIR 116 236 -26 1 867 312 353 86 0 chr9 37066484 37066600 -87009572 - L2b LINE L2 0 3375 3250 1 867 273 278 141 22 chr9 37067054 37067146 -87009026 + B1F SINE Alu 3 105 -44 1 867 259 362 46 37 chr9 37067476 37067585 -87008587 + L1MDa LINE L1 524 633 -6000 1 867 818 278 6 12 chr9 37067651 37067815 -87008357 + RSINE1 SINE B4 3 165 0 1 867 1125 120 12 0 chr9 37067846 37068013 -87008159 + B2_Mm1t SINE B2 11 179 -14 1 867 251 150 28 87 chr9 37068045 37068114 -87008058 + B2_Mm2 SINE B2 47 114 -102 1 867 27 0 0 0 chr9 37068129 37068156 -87008016 + AT_rich Low_complexity Low_complexity 1 27 0 1 867 373 291 88 12 chr9 37068167 37068320 -87007852 + L1MD2 LINE L1 5605 5770 -589 1 867 573 194 137 15 chr9 37068320 37068451 -87007721 + B1_Mm SINE Alu 1 147 0 1 867 216 0 0 0 chr9 37068503 37068527 -87007645 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 867 287 290 88 25 chr9 37068537 37068696 -87007476 + L1MD2 LINE L1 5944 6112 -247 1 867 1279 199 19 0 chr9 37069080 37069291 -87006881 + B3 SINE B2 1 215 -1 1 867 1013 236 20 0 chr9 37070381 37070576 -87005596 - B3 SINE B2 -17 199 1 1 867 366 272 238 0 chr9 37071267 37071414 -87004758 - MIRb SINE MIR -27 241 60 1 867 211 162 108 0 chr9 37072427 37072464 -87003708 - ID2 SINE ID -4 79 39 1 867 1303 147 101 0 chr9 37072476 37072694 -87003478 + RLTR20C LTR ERVK 1 240 -294 1 867 228 260 198 10 chr9 37072685 37072786 -87003386 - MER105 DNA DNA -51 153 34 1 867 1247 61 0 20 chr9 37072843 37072993 -87003179 - B1_Mus2 SINE Alu 0 147 1 1 867 1121 112 12 0 chr9 37073014 37073175 -87002997 - B2_Mm2 SINE B2 -31 164 2 1 867 507 196 43 0 chr9 37073185 37073277 -87002895 - PB1D9 SINE Alu -6 114 19 1 867 190 309 10 60 chr9 37075066 37075166 -87001006 - L2a LINE L2 -1 3425 3331 1 867 207 0 0 0 chr9 37075185 37075208 -87000964 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 867 596 343 159 21 chr9 37075225 37075876 -87000296 - L2a LINE L2 -184 3242 2496 1 867 569 263 0 8 chr9 37075987 37076106 -87000066 + ID_B1 SINE B4 79 196 -28 1 867 498 300 226 88 chr9 37076128 37076552 -86999620 - L2 LINE L2 -650 2769 2186 1 867 3146 54 3 5 chr9 37076552 37076926 -86999246 + L1_Mus1 LINE L1 6195 6567 0 1 867 498 300 226 88 chr9 37076926 37077416 -86998756 - L2 LINE L2 -1234 2185 1747 1 867 805 167 20 34 chr9 37077416 37077565 -86998607 - B1_Mur3 SINE Alu 0 149 3 1 867 498 300 226 88 chr9 37077565 37077791 -86998381 - L2 LINE L2 -1673 1746 1470 1 867 1111 186 34 24 chr9 37077841 37078050 -86998122 - B3 SINE B2 -1 215 5 1 867 230 258 104 15 chr9 37078159 37078226 -86997946 - ID4 SINE ID -8 75 3 1 867 3075 119 5 2 chr9 37078410 37078830 -86997342 - MTC LTR MaLR 0 421 1 1 867 2058 159 71 0 chr9 37079054 37079407 -86996765 + ORR1C1 LTR MaLR 1 378 0 1 867 234 0 0 0 chr9 37079546 37079572 -86996600 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 867 219 296 111 0 chr9 37079668 37079722 -86996450 + B1F2 SINE Alu 49 108 -41 1 867 207 151 19 19 chr9 37079722 37079776 -86996396 + A-rich Low_complexity Low_complexity 2 55 0 1 867 278 243 28 42 chr9 37079777 37079919 -86996253 + L1MB8 LINE L1 3868 4007 -2139 1 867 273 258 115 77 chr9 37079950 37080080 -86996092 + L1MB8 LINE L1 4108 4242 -1904 1 867 534 244 40 16 chr9 37080085 37080210 -86995962 + RSINE1 SINE B4 2 129 -36 1 867 369 62 0 0 chr9 37080253 37080301 -86995871 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 867 753 258 146 25 chr9 37080337 37080536 -86995636 + ID_B1 SINE B4 2 224 0 1 867 323 278 174 28 chr9 37080542 37080760 -86995412 + L1MB8 LINE L1 4370 4619 -1527 1 867 232 125 0 67 chr9 37080760 37080820 -86995352 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 1 867 842 265 186 8 chr9 37080822 37081321 -86994851 + L1MB8 LINE L1 4615 5202 -944 1 867 677 197 25 0 chr9 37081325 37081447 -86994725 + B1_Mur2 SINE Alu 11 135 -14 1 867 243 0 0 0 chr9 37081450 37081477 -86994695 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 867 849 281 93 40 chr9 37081479 37081562 -86994610 + L1MB8 LINE L1 5203 5289 -857 1 867 3147 126 84 4 chr9 37081562 37082050 -86994122 + RLTR11A LTR ERVK 1 527 -1 1 867 920 253 129 34 chr9 37082050 37082671 -86993501 + L1MB8 LINE L1 5284 5984 -194 1 867 231 36 0 0 chr9 37083202 37083230 -86992942 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 867 505 226 57 0 chr9 37083454 37083560 -86992612 - PB1D10 SINE Alu -5 112 1 1 867 26 0 0 0 chr9 37084355 37084381 -86991791 + AT_rich Low_complexity Low_complexity 1 26 0 1 867 1224 51 0 0 chr9 37085397 37085535 -86990637 + B1_Mus1 SINE Alu 2 139 -9 1 867 216 0 0 0 chr9 37085535 37085559 -86990613 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1 867 252 0 0 0 chr9 37085560 37085588 -86990584 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 1 867 292 87 0 0 chr9 37085590 37085636 -86990536 + B1_Mur4 SINE Alu 105 150 0 1 867 802 199 7 20 chr9 37086156 37086305 -86989867 - B1_Mus1 SINE Alu 0 148 2 1 867 234 0 0 0 chr9 37086933 37086959 -86989213 + (T)n Simple_repeat Simple_repeat 1 26 0 1 867 549 156 100 9 chr9 37086959 37087069 -86989103 - PB1D9 SINE Alu 0 120 1 1 867 306 0 0 0 chr9 37087592 37087626 -86988546 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 867 1195 66 0 0 chr9 37087630 37087781 -86988391 - B2_Mm2 SINE B2 -44 151 1 1 867 3166 56 42 3 chr9 37087781 37088159 -86988013 - MTA_Mm LTR MaLR -3 393 1 1 867 8395 59 12 67 chr9 37088159 37089321 -86986851 - MTA_Mm-int LTR MaLR 0 1098 1 1 867 3519 36 8 0 chr9 37089321 37089714 -86986458 - MTA_Mm LTR MaLR 0 396 1 1 867 759 204 44 0 chr9 37089838 37089975 -86986197 + B1_Mus1 SINE Alu 2 144 -4 1 867 381 131 0 0 chr9 37089977 37090038 -86986134 + (GGGA)n Simple_repeat Simple_repeat 3 63 0 1 867 365 310 46 56 chr9 37090038 37090233 -86985939 + L1MEc LINE L1 101 293 -6107 1 867 1645 217 35 66 chr9 37090305 37090658 -86985514 - MTD LTR MaLR -8 411 54 1 867 1305 96 37 11 chr9 37090658 37090847 -86985325 + B2_Mm2 SINE B2 1 194 -1 1 867 1645 217 35 66 chr9 37090847 37090917 -86985255 - MTD LTR MaLR -366 53 1 1 867 834 181 6 1 chr9 37090941 37091091 -86985081 + ORR1C2 LTR MaLR 17 173 -211 1 867 810 201 0 34 chr9 37091082 37091231 -86984941 + B1_Mur3 SINE Alu 6 149 0 1 867 202 205 0 25 chr9 37091231 37091271 -86984901 + (CAGG)n Simple_repeat Simple_repeat 1 39 0 1 867 1136 175 48 18 chr9 37091281 37091508 -86984664 + ORR1C2 LTR MaLR 151 384 0 1 867 377 243 96 64 chr9 37091509 37091665 -86984507 + L1MEc LINE L1 831 996 -5404 1 867 558 279 30 15 chr9 37091665 37091796 -86984376 + B1F1 SINE Alu 2 134 -15 1 867 377 243 96 64 chr9 37091796 37091890 -86984282 + L1MEc LINE L1 997 1089 -5311 1 867 1106 262 68 158 chr9 37092079 37092338 -86983834 + Tigger1 DNA MER2_type 1043 1292 -1126 1 867 1189 246 71 52 chr9 37092338 37092745 -86983427 - MTD LTR MaLR 0 419 5 1 867 1106 262 68 158 chr9 37092745 37092849 -86983323 + Tigger1 DNA MER2_type 1293 1348 -1070 1 867 270 0 0 0 chr9 37092849 37092879 -86983293 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 108 1106 262 68 158 chr9 37092879 37093513 -86982659 + Tigger1 DNA MER2_type 1349 1951 -467 1 868 258 265 0 14 chr9 37093517 37093586 -86982586 - PB1D10 SINE Alu -2 115 48 1 868 439 230 111 0 chr9 37093697 37093823 -86982349 + Tigger1 DNA MER2_type 1950 2089 -329 1 868 368 210 0 104 chr9 37093825 37093929 -86982243 + B1F SINE Alu 56 148 -1 1 868 626 279 38 0 chr9 37093941 37094099 -86982073 + Tigger1 DNA MER2_type 2081 2244 -174 1 868 875 167 7 0 chr9 37094084 37094222 -86981950 - B1_Mur1 SINE Alu -5 144 6 1 868 240 263 75 103 chr9 37094222 37094258 -86981914 + YREP_Mm Unknown Unknown 182 350 -1462 1 868 2515 209 65 54 chr9 37094510 37095269 -86980903 + RMER1B Other Other 162 905 -161 1 868 2466 126 3 0 chr9 37095274 37095600 -86980572 + ORR1A2 LTR MaLR 1 327 0 1 868 10200 137 65 31 chr9 37095600 37097169 -86979003 + ORR1A2-int LTR MaLR 14 1668 -295 1 868 1349 67 79 0 chr9 37097169 37097347 -86978825 - B2_Mm1a SINE B2 0 193 2 1 868 10200 137 65 31 chr9 37097347 37097630 -86978542 + ORR1A2-int LTR MaLR 1669 1928 -35 1 868 1656 74 116 0 chr9 37097628 37097870 -86978302 + ORR1A2 LTR MaLR 58 327 0 1 868 504 204 0 10 chr9 37097882 37097986 -86978186 + RMER1B Other Other 939 1041 -25 1 868 767 188 113 27 chr9 37097987 37098173 -86977999 + Tigger1 DNA MER2_type 2217 2418 0 1 868 2128 162 118 18 chr9 37098291 37098674 -86977498 - MTC LTR MaLR 0 421 1 1 868 1092 300 14 31 chr9 37098739 37099031 -86977141 + B4A SINE B4 6 292 0 1 868 257 263 0 17 chr9 37099222 37099280 -86976892 + ID4_ SINE ID 14 70 -13 1 868 214 200 0 18 chr9 37100092 37100148 -86976024 + T-rich Low_complexity Low_complexity 2 56 0 1 868 495 115 323 0 chr9 37100149 37100245 -86975927 - B1_Mur4 SINE Alu -6 144 18 1 868 1357 157 24 9 chr9 37100268 37100480 -86975692 - B3 SINE B2 0 216 2 1 868 718 129 96 29 chr9 37100709 37100845 -86975327 + B1_Mus1 SINE Alu 4 148 0 1 868 25 0 0 0 chr9 37101658 37101683 -86974489 + AT_rich Low_complexity Low_complexity 1 25 0 1 868 1189 96 0 0 chr9 37101735 37101881 -86974291 + B1_Mus1 SINE Alu 3 148 0 1 868 307 127 18 35 chr9 37101901 37101958 -86974214 + B1_Mm SINE Alu 89 144 -3 1 868 234 0 0 0 chr9 37101958 37101984 -86974188 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 868 882 185 0 0 chr9 37101998 37102133 -86974039 - B1_Mur1 SINE Alu -10 139 5 1 868 703 244 129 20 chr9 37102548 37102749 -86973423 + ID_B1 SINE B4 2 224 0 1 868 436 304 57 28 chr9 37103008 37103184 -86972988 + MIR SINE MIR 34 214 -48 1 868 24 0 0 0 chr9 37103262 37103286 -86972886 + AT_rich Low_complexity Low_complexity 1 24 0 1 868 258 156 0 0 chr9 37103647 37103692 -86972480 + T-rich Low_complexity Low_complexity 4 48 0 1 868 1346 104 38 0 chr9 37103698 37103881 -86972291 - B2_Mm2 SINE B2 -4 191 2 2 868 1346 110 0 40 chr9 37104001 37104200 -86971972 - B2_Mm2 SINE B2 -3 192 2 2 868 21 0 0 0 chr9 37104595 37104616 -86971556 + AT_rich Low_complexity Low_complexity 1 21 0 2 868 595 288 168 0 chr9 37105107 37105298 -86970874 + ID_B1 SINE B4 2 224 0 2 868 446 288 199 0 chr9 37105818 37105964 -86970208 + B3A SINE B2 6 180 -18 2 868 210 71 0 0 chr9 37105976 37106004 -86970168 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 2 868 346 240 164 37 chr9 37106005 37106139 -86970033 + HAL1-3A_ME LINE L1 1976 2126 -732 2 868 225 311 33 0 chr9 37106191 37106252 -86969920 + BC1_Mm scRNA scRNA 1 63 -89 2 868 249 303 192 0 chr9 37106301 37106400 -86969772 + PB1D7 SINE Alu 1 118 -2 2 868 2054 232 172 63 chr9 37106609 37107484 -86968688 + RCHARR1 DNA MER1_type 3 973 -1 2 868 217 291 127 56 chr9 37107594 37107736 -86968436 - MIRb SINE MIR -12 256 105 2 868 387 250 188 0 chr9 37107760 37107904 -86968268 + B4A SINE B4 96 266 -26 2 868 427 285 48 14 chr9 37108554 37108700 -86967472 + L1MC1 LINE L1 4008 4158 -1988 2 868 259 172 62 0 chr9 37108700 37108764 -86967408 + B2_Mm2 SINE B2 127 194 -1 2 868 1286 245 104 23 chr9 37108765 37109207 -86966965 + L1MC1 LINE L1 5331 5808 -525 2 868 24 0 0 0 chr9 37109210 37109234 -86966938 + AT_rich Low_complexity Low_complexity 1 24 0 2 868 565 275 100 0 chr9 37109243 37109363 -86966809 + RSINE1 SINE B4 4 135 -30 2 868 362 265 270 37 chr9 37109396 37109815 -86966357 + L1MC1 LINE L1 5813 6333 -11 2 868 1417 72 5 40 chr9 37109828 37110030 -86966142 + B2_Mm2 SINE B2 1 195 0 2 868 301 305 133 30 chr9 37110042 37110177 -86965995 + B1F2 SINE Alu 1 149 0 2 868 329 62 21 0 chr9 37110177 37110225 -86965947 + (GAAAA)n Simple_repeat Simple_repeat 5 53 0 2 868 395 236 0 0 chr9 37110293 37110365 -86965807 - tRNA-Ala-GCY_ tRNA tRNA 0 75 4 2 868 207 0 0 0 chr9 37110808 37110831 -86965341 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 868 713 243 141 6 chr9 37111644 37111814 -86964358 - B3 SINE B2 -23 193 1 2 868 25 71 0 14 chr9 37112161 37112216 -86963956 + AT_rich Low_complexity Low_complexity 1 55 0 2 868 1379 23 91 17 chr9 37112216 37112392 -86963780 + B2_Mm1a SINE B2 2 190 -3 2 868 25 71 0 14 chr9 37112392 37112407 -86963765 + AT_rich Low_complexity Low_complexity 1 15 0 2 868 960 270 87 144 chr9 37112558 37113016 -86963156 - MER82 DNA MER2_type -27 626 195 2 868 324 304 0 0 chr9 37113019 37113098 -86963074 - ID4_ SINE ID -2 81 3 2 868 782 256 75 40 chr9 37113177 37113575 -86962597 + L1MB3 LINE L1 4820 5231 -909 2 868 598 328 41 66 chr9 37113577 37113897 -86962275 + ORR1E LTR MaLR 4 315 -44 2 868 718 251 180 20 chr9 37114520 37114915 -86961257 + L1MB3 LINE L1 5685 6142 -41 2 868 387 231 44 80 chr9 37114921 37115034 -86961138 + PB1D10 SINE Alu 9 117 0 2 868 242 348 0 42 chr9 37116119 37116214 -86959958 + RSINE1 SINE B4 11 101 -64 2 868 1423 232 66 28 chr9 37116214 37116578 -86959594 - MTD LTR MaLR 0 419 42 2 868 229 272 0 0 chr9 37116961 37117029 -86959143 + GA-rich Low_complexity Low_complexity 1 68 0 2 868 310 239 14 0 chr9 37117499 37117570 -86958602 - ID4 SINE ID -4 79 8 2 868 504 0 0 0 chr9 37117830 37117886 -86958286 + (TTCC)n Simple_repeat Simple_repeat 2 57 0 2 868 507 211 32 3 chr9 37117886 37117988 -86958184 - B1_Mur2 SINE Alu -12 115 1 2 868 288 261 71 71 chr9 37117906 37118005 -86958167 - MT2B LTR ERVL -362 239 141 2 868 347 302 90 117 chr9 37118133 37118399 -86957773 - ORR1E LTR MaLR -100 259 1 2 868 210 370 50 0 chr9 37119191 37119310 -86956862 + MIRb SINE MIR 136 260 -8 2 868 3664 44 5 2 chr9 37119382 37119817 -86956355 + RLTR10C LTR ERVK 1 436 0 2 868 968 215 30 5 chr9 37120563 37120764 -86955408 - B3 SINE B2 -10 206 1 2 868 1194 54 0 0 chr9 37121109 37121256 -86954916 + B1_Mus2 SINE Alu 1 147 0 2 868 458 58 0 14 chr9 37123671 37123741 -86952431 - L1Md_F2 LINE L1 -12 6570 6502 2 868 339 268 14 0 chr9 37123768 37123839 -86952333 - ID4_ SINE ID -1 82 11 2 868 404 264 31 62 chr9 37123838 37123967 -86952205 - B1F SINE Alu -10 139 15 2 868 357 348 7 34 chr9 37123967 37123984 -86952188 - ID_B1 SINE B4 -10 214 73 2 868 288 0 0 0 chr9 37124115 37124147 -86952025 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 868 417 175 97 0 chr9 37124290 37124404 -86951768 + L1M4 LINE L1 4438 4562 -1584 2 868 360 64 0 0 chr9 37124520 37124567 -86951605 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 868 274 130 0 0 chr9 37124607 37124653 -86951519 + L1M4 LINE L1 4571 4616 -1530 2 868 868 261 94 44 chr9 37124705 37124925 -86951247 + L1M4 LINE L1 4789 5001 -1145 2 868 1651 26 0 0 chr9 37124925 37125117 -86951055 + B2_Mm1t SINE B2 2 193 0 2 868 868 261 94 44 chr9 37125117 37125461 -86950711 + L1M4 LINE L1 5002 5381 -765 2 868 34 0 0 0 chr9 37126584 37126618 -86949554 + AT_rich Low_complexity Low_complexity 1 34 0 2 868 887 135 49 21 chr9 37127200 37127344 -86948828 + B1_Mur4 SINE Alu 3 150 0 2 868 22 80 0 0 chr9 37128317 37128367 -86947805 + AT_rich Low_complexity Low_complexity 1 50 0 2 868 1313 188 35 174 chr9 37128603 37129034 -86947138 - MTE2a LTR MaLR -8 371 1 2 868 825 65 0 0 chr9 37130064 37130171 -86946001 - B2_Mm2 SINE B2 -88 107 1 2 868 566 294 204 28 chr9 37130175 37130528 -86945644 + MLT1D LTR MaLR 64 478 -27 2 868 466 269 42 21 chr9 37130793 37130937 -86945235 + B1F SINE Alu 1 147 -2 2 868 639 247 25 99 chr9 37130940 37131142 -86945030 + B3A SINE B2 3 192 -6 2 868 346 316 8 64 chr9 37131254 37131379 -86944793 + HAL1 LINE L1 2164 2281 -226 2 868 812 169 108 56 chr9 37131402 37131615 -86944557 + RMER15 LTR ERVL 4 227 -348 2 868 284 183 17 0 chr9 37131598 37131658 -86944514 + RMER15 LTR ERVL 515 575 0 2 868 2030 93 29 35 chr9 37131668 37131979 -86944193 + RLTR27 LTR ERVK 1 309 0 2 868 24 32 0 0 chr9 37132605 37132636 -86943536 + AT_rich Low_complexity Low_complexity 1 31 0 2 868 348 24 0 0 chr9 37132868 37132909 -86943263 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 868 1496 192 149 12 chr9 37133058 37133380 -86942792 + ORR1D1 LTR MaLR 1 366 -8 2 868 824 219 53 21 chr9 37133434 37133621 -86942551 + B3A SINE B2 2 194 -4 2 868 1313 106 11 0 chr9 37133673 37133862 -86942310 + B2_Mm1t SINE B2 1 191 -2 2 868 180 0 0 0 chr9 37133947 37133967 -86942205 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 868 888 255 127 44 chr9 37134088 37134819 -86941353 + L1MA4 LINE L1 5085 5936 -364 2 868 611 259 52 0 chr9 37135520 37135655 -86940517 - RSINE1 SINE B4 -9 156 15 2 868 528 293 41 0 chr9 37135682 37135805 -86940367 - RSINE1 SINE B4 -36 129 2 2 868 23 78 0 0 chr9 37135805 37135856 -86940316 + AT_rich Low_complexity Low_complexity 1 51 0 2 868 190 109 0 61 chr9 37135873 37135922 -86940250 + T-rich Low_complexity Low_complexity 2 47 0 2 868 1040 218 48 0 chr9 37135934 37136140 -86940032 - B3 SINE B2 0 216 1 2 868 1029 258 74 24 chr9 37136263 37136600 -86939572 + ORR1E LTR MaLR 4 357 -2 2 868 304 128 315 34 chr9 37136699 37136788 -86939384 + PB1D9 SINE Alu 2 115 -5 2 868 279 93 0 0 chr9 37136790 37136833 -86939339 + (CTAAA)n Simple_repeat Simple_repeat 3 45 0 2 868 1060 194 23 19 chr9 37136847 37137062 -86939110 + B3 SINE B2 1 216 0 2 868 22 70 0 0 chr9 37138096 37138139 -86938033 + AT_rich Low_complexity Low_complexity 1 43 0 2 868 1757 150 122 0 chr9 37138354 37138674 -86937498 - ORR1B2 LTR MaLR -8 359 1 2 868 1720 130 7 7 chr9 37138674 37138953 -86937219 - ORR1B2-int LTR MaLR 0 1509 1231 2 868 3329 8 0 0 chr9 37138953 37139320 -86936852 + IAPLTR1_Mm LTR ERVK 1 367 0 2 868 52937 22 17 2 chr9 37139320 37145694 -86930478 + IAPEz-int LTR ERVK 8 6481 0 2 868 3352 5 0 0 chr9 37145694 37146061 -86930111 + IAPLTR1_Mm LTR ERVK 1 367 0 2 868 5422 148 102 33 chr9 37146061 37147007 -86929165 - ORR1B2-int LTR MaLR -274 1235 227 2 868 2639 40 65 0 chr9 37147007 37147332 -86928840 + ORR1A1 LTR MaLR 1 346 0 2 868 5422 148 102 33 chr9 37147332 37147540 -86928632 - ORR1B2-int LTR MaLR -1283 226 1 2 868 1990 135 79 9 chr9 37147540 37147883 -86928289 - ORR1B2 LTR MaLR 0 367 1 2 868 2403 183 37 12 chr9 37147936 37148450 -86927722 - RLTR11A2 LTR ERVK 0 527 1 2 868 379 330 0 0 chr9 37149429 37149520 -86926652 + PB1D10 SINE Alu 13 103 -14 2 868 292 354 0 68 chr9 37149520 37149532 -86926640 + ID_B1 SINE B4 94 189 -35 2 868 282 56 0 0 chr9 37149614 37149650 -86926522 + (TAG)n Simple_repeat Simple_repeat 2 37 0 2 868 324 253 24 24 chr9 37149655 37149740 -86926432 + B4A SINE B4 5 89 -203 2 868 313 250 40 0 chr9 37149769 37149845 -86926327 + B4A SINE B4 177 255 -37 2 868 201 121 0 0 chr9 37149862 37149895 -86926277 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 868 2390 149 99 5 chr9 37150414 37150839 -86925333 + MT2A LTR ERVL 1 465 -68 2 868 246 171 0 58 chr9 37150875 37150962 -86925210 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 868 470 252 37 18 chr9 37151017 37151126 -86925046 - PB1D7 SINE Alu -8 112 2 2 868 385 276 84 25 chr9 37151132 37151251 -86924921 - MIRb SINE MIR -118 150 25 2 868 225 83 0 0 chr9 37151307 37151343 -86924829 + (A)n Simple_repeat Simple_repeat 1 36 0 2 868 457 313 152 76 chr9 37151795 37152151 -86924021 + MLT1G LTR MaLR 206 588 -3 2 868 392 243 148 35 chr9 37152637 37152752 -86923420 + RSINE1 SINE B4 3 130 -35 2 868 232 222 62 31 chr9 37153483 37153548 -86922624 - B1_Mur1 SINE Alu -2 147 81 2 868 1818 151 101 15 chr9 37153557 37153894 -86922278 + RMER4B LTR ERVK 220 585 0 2 868 21 0 0 0 chr9 37154096 37154117 -86922055 + AT_rich Low_complexity Low_complexity 1 21 0 2 868 1358 60 60 5 chr9 37154207 37154391 -86921781 + B2_Mm2 SINE B2 2 195 0 2 868 504 27 0 13 chr9 37154391 37154461 -86921711 + L1Md_F3 LINE L1 6496 6565 -19 2 868 201 39 0 0 chr9 37154461 37154487 -86921685 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2 868 377 52 52 0 chr9 37154627 37154685 -86921487 + (TTAAA)n Simple_repeat Simple_repeat 1 61 0 3 868 1187 102 147 5 chr9 37156218 37156415 -86919757 + URR1A DNA MER1_type 2 226 0 3 868 255 156 0 0 chr9 37156630 37156675 -86919497 - ID4 SINE ID -10 73 29 3 868 622 172 67 7 chr9 37156704 37156839 -86919333 - B1F SINE Alu 0 149 7 3 868 268 281 0 99 chr9 37157040 37157111 -86919061 - ID SINE ID -141 83 20 3 868 286 262 10 10 chr9 37157225 37157303 -86918869 - B1F SINE Alu -47 80 3 3 868 644 224 62 34 chr9 37157323 37157499 -86918673 + B3A SINE B2 1 181 -17 3 868 223 338 129 17 chr9 37157542 37157783 -86918389 - L2 LINE L2 -433 2986 2719 3 868 378 250 0 93 chr9 37158213 37158310 -86917862 + B3 SINE B2 109 196 -20 3 868 402 379 71 32 chr9 37158315 37158596 -86917576 - L2 LINE L2 -2574 845 554 3 868 1443 64 21 0 chr9 37159821 37160008 -86916164 + B2_Mm2 SINE B2 1 191 -4 3 868 337 352 0 28 chr9 37160331 37160439 -86915733 - ID_B1 SINE B4 -20 204 100 3 868 447 253 0 0 chr9 37160562 37160653 -86915519 - ID_B1 SINE B4 -11 213 123 3 868 564 301 41 41 chr9 37160695 37160986 -86915186 + B4A SINE B4 1 291 -1 3 868 1324 77 66 0 chr9 37161071 37161252 -86914920 + B2_Mm2 SINE B2 1 193 -2 3 868 196 311 143 48 chr9 37161349 37161538 -86914634 + MIR SINE MIR 3 209 -53 3 868 548 186 8 0 chr9 37161567 37161685 -86914487 + CT-rich Low_complexity Low_complexity 2 120 0 3 868 214 122 0 109 chr9 37161688 37161712 -86914460 + T-rich Low_complexity Low_complexity 30 51 0 3 868 925 148 0 26 chr9 37161712 37161865 -86914307 - B1_Mur4 SINE Alu 0 150 2 3 868 214 122 0 109 chr9 37161865 37161895 -86914277 + T-rich Low_complexity Low_complexity 3 29 0 3 868 256 149 0 39 chr9 37161996 37162073 -86914099 + A-rich Low_complexity Low_complexity 2 75 0 3 868 183 42 0 0 chr9 37162101 37162125 -86914047 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 868 1313 271 17 22 chr9 37162134 37162545 -86913627 - Lx7 LINE L1 -382 7314 6906 3 868 216 0 0 0 chr9 37162757 37162781 -86913391 + (A)n Simple_repeat Simple_repeat 1 24 0 3 868 1340 214 41 0 chr9 37162781 37163071 -86913101 - Lx7 LINE L1 -772 6924 6623 3 868 757 198 0 0 chr9 37163077 37163203 -86912969 + B1_Mur2 SINE Alu 5 130 -19 3 868 207 0 0 0 chr9 37163208 37163231 -86912941 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 3 868 886 209 151 14 chr9 37163241 37163459 -86912713 + Lx5 LINE L1 6782 7029 -21 3 868 212 194 56 0 chr9 37163466 37163497 -86912675 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 3 868 1570 92 38 0 chr9 37163497 37163737 -86912435 + Lx2A1 LINE L1 6759 7007 -1 3 868 212 194 56 0 chr9 37163737 37163777 -86912395 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 3 868 359 190 41 54 chr9 37163794 37163905 -86912267 - B2_Mm2 SINE B2 -102 114 2 3 868 1159 113 0 0 chr9 37163909 37164077 -86912095 - B2_Mm2 SINE B2 -26 169 2 3 868 1658 196 15 15 chr9 37164106 37164448 -86911724 - Lx7 LINE L1 -1101 6595 6254 3 868 436 281 66 8 chr9 37164448 37164570 -86911602 - B3A SINE B2 -69 129 1 3 868 276 312 60 83 chr9 37164571 37164616 -86911556 - MER3 DNA MER1_type -37 172 133 3 868 520 289 59 0 chr9 37164616 37164751 -86911421 + B1F1 SINE Alu 1 143 -6 3 868 276 312 60 83 chr9 37164751 37164873 -86911299 - MER3 DNA MER1_type -77 132 9 3 868 234 0 0 0 chr9 37165022 37165048 -86911124 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 868 222 37 0 0 chr9 37165112 37165139 -86911033 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 868 758 138 54 0 chr9 37165139 37165269 -86910903 - B1_Mur2 SINE Alu -11 138 2 3 868 450 79 0 0 chr9 37165642 37165705 -86910467 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 868 603 228 36 29 chr9 37165705 37165845 -86910327 - B3A SINE B2 -57 141 1 3 868 703 286 86 10 chr9 37165888 37166086 -86910086 + ID_B1 SINE B4 3 215 -9 3 868 422 114 0 14 chr9 37166086 37166157 -86910015 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 868 277 275 21 52 chr9 37166257 37166283 -86909889 - ID_B1 SINE B4 -117 107 15 3 868 284 243 14 0 chr9 37166283 37166294 -86909878 - BC1_Mm scRNA scRNA -67 85 15 3 868 336 152 17 0 chr9 37166294 37166353 -86909819 - tRNA-Ala-GCY_ tRNA tRNA -7 68 9 3 868 592 266 25 130 chr9 37168024 37168262 -86907910 + LTR16C LTR ERVL 178 390 -99 3 868 542 276 221 0 chr9 37168286 37168485 -86907687 - MLT1E1A LTR MaLR -165 515 273 3 868 239 219 0 0 chr9 37168569 37168610 -86907562 - ID4 SINE ID -9 74 34 3 868 249 245 9 81 chr9 37168622 37168733 -86907439 + RMER1C Other Other 1240 1342 0 3 868 2636 183 102 9 chr9 37168809 37169018 -86907154 + RMER1C Other Other 646 969 -373 3 868 432 0 0 0 chr9 37169018 37169066 -86907106 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 868 2636 176 102 8 chr9 37169066 37169386 -86906786 + RMER1C Other Other 970 1332 -10 3 868 402 39 0 0 chr9 37169575 37169627 -86906545 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 3 868 225 159 42 28 chr9 37169683 37169754 -86906418 + T-rich Low_complexity Low_complexity 2 73 0 3 868 530 216 10 0 chr9 37170198 37170300 -86905872 - PB1D7 SINE Alu -4 116 14 3 868 292 300 11 43 chr9 37170224 37170318 -86905854 - B4A SINE B4 -119 173 83 3 868 370 247 12 0 chr9 37170333 37170414 -86905758 - ID4_ SINE ID 0 83 2 3 868 294 29 0 0 chr9 37170420 37170455 -86905717 + (CAT)n Simple_repeat Simple_repeat 2 36 0 3 868 182 283 15 77 chr9 37171004 37171069 -86905103 - L2c LINE L2 -87 3300 3240 3 868 320 351 83 24 chr9 37171678 37171847 -86904325 - LTR81A LTR ERV1? -911 482 304 3 868 327 372 28 57 chr9 37171949 37172197 -86903975 - LTR81A LTR ERV1? -1096 254 14 3 868 283 333 114 0 chr9 37172373 37172478 -86903694 + PB1D10 SINE Alu 1 117 0 3 868 567 279 31 0 chr9 37172594 37172723 -86903449 + RSINE1 SINE B4 2 134 -31 3 868 526 301 58 27 chr9 37172774 37172962 -86903210 + Lx8 LINE L1 7151 7344 -129 3 868 189 107 0 0 chr9 37172976 37173004 -86903168 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 868 474 18 0 0 chr9 37173104 37173159 -86903013 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 868 467 292 9 0 chr9 37173351 37173464 -86902708 + ID_B1 SINE B4 78 191 -33 3 868 359 282 8 76 chr9 37173360 37173479 -86902693 + PB1D10 SINE Alu 6 116 -1 3 868 288 227 15 0 chr9 37173518 37173584 -86902588 + L1MB7 LINE L1 5534 5600 -584 3 868 581 252 136 16 chr9 37173633 37173875 -86902297 + L1MB7 LINE L1 5895 6165 -19 3 868 561 280 0 22 chr9 37174073 37174208 -86901964 - B1F SINE Alu 0 149 18 3 868 465 241 9 9 chr9 37174214 37174327 -86901845 - PB1D10 SINE Alu 0 117 5 3 868 258 262 12 36 chr9 37174384 37174467 -86901705 - MIRb SINE MIR -79 189 109 3 868 837 310 35 112 chr9 37176478 37176878 -86899294 - MLT1B LTR MaLR -21 369 1 3 868 672 239 37 0 chr9 37176927 37177061 -86899111 + ID_B1 SINE B4 85 223 -1 3 868 337 312 37 31 chr9 37176932 37177094 -86899078 - YREP_Mm Unknown Unknown -1505 307 145 3 868 243 0 0 0 chr9 37177390 37177417 -86898755 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 3 868 422 239 35 52 chr9 37177417 37177532 -86898640 - B1_Mur1 SINE Alu -13 136 24 3 868 183 42 0 0 chr9 37177532 37177556 -86898616 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 868 451 306 30 0 chr9 37177580 37177726 -86898446 - MLT1J1 LTR MaLR -304 208 65 3 868 589 249 104 16 chr9 37177729 37177921 -86898251 + B3 SINE B2 2 210 -6 3 868 467 272 123 0 chr9 37178021 37178135 -86898037 - RSINE1 SINE B4 -36 129 2 3 868 420 256 13 0 chr9 37178329 37178430 -86897742 - B1F SINE Alu -11 109 7 3 868 826 175 20 20 chr9 37178611 37178757 -86897415 + B1_Mur1 SINE Alu 2 147 -2 3 868 659 12 12 0 chr9 37179443 37179523 -86896649 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 868 339 269 55 0 chr9 37179852 37179980 -86896192 - L1M5 LINE L1 -767 5473 5337 3 868 412 266 78 47 chr9 37179984 37180156 -86896016 - B3 SINE B2 -8 187 2 3 868 557 237 66 7 chr9 37180255 37180391 -86895781 - B1F SINE Alu -5 144 1 3 868 216 67 0 0 chr9 37180417 37180447 -86895725 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 868 794 255 62 69 chr9 37180695 37180969 -86895203 + B4A SINE B4 5 276 -16 3 868 431 289 21 0 chr9 37181402 37181499 -86894673 + RSINE1 SINE B4 2 100 -65 3 868 1501 62 0 40 chr9 37181730 37181931 -86894241 + B2_Mm1a SINE B2 1 193 0 3 868 29 0 0 0 chr9 37182469 37182498 -86893674 + AT_rich Low_complexity Low_complexity 1 29 0 3 868 220 323 199 0 chr9 37183321 37183507 -86892665 - L3b LINE CR1 -254 228 6 3 868 25 51 0 0 chr9 37183746 37183785 -86892387 + AT_rich Low_complexity Low_complexity 1 39 0 3 868 362 309 78 113 chr9 37183991 37184414 -86891758 - MLT1A1 LTR MaLR 0 408 1 3 868 733 205 13 28 chr9 37184429 37184628 -86891544 - B3 SINE B2 -1 194 1 3 868 668 235 73 42 chr9 37184644 37184835 -86891337 - B3A SINE B2 0 198 2 3 868 293 231 97 117 chr9 37185336 37185439 -86890733 + PB1D9 SINE Alu 19 119 -1 3 868 705 271 5 69 chr9 37185444 37185646 -86890526 + B3A SINE B2 10 198 0 3 868 1129 174 29 5 chr9 37185664 37185872 -86890300 + B3 SINE B2 3 215 -1 3 868 828 255 23 19 chr9 37185893 37186109 -86890063 + ID_B1 SINE B4 1 217 -7 3 868 371 302 19 0 chr9 37186118 37186129 -86890043 + ID SINE ID 69 81 -143 3 868 456 236 64 0 chr9 37186129 37186239 -86889933 + PB1D10 SINE Alu 1 117 0 3 868 1178 62 0 0 chr9 37186243 37186388 -86889784 + B1_Mm SINE Alu 1 145 -2 4 868 840 20 0 0 chr9 37186388 37186486 -86889686 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 4 868 486 49 0 0 chr9 37186489 37186550 -86889622 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 868 248 0 31 0 chr9 37186605 37186637 -86889535 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 868 663 66 0 35 chr9 37186637 37186751 -86889421 - B1_Mm SINE Alu -1 148 43 4 868 236 304 10 71 chr9 37186855 37186954 -86889218 - MIR3 SINE MIR -14 194 102 4 868 532 187 53 53 chr9 37187181 37187294 -86888878 - ID_B1 SINE B4 -8 216 104 4 868 1230 92 0 0 chr9 37188801 37188975 -86887197 + (TGGA)n Simple_repeat Simple_repeat 4 177 0 4 868 1272 156 0 111 chr9 37189482 37189735 -86886437 - URR1B DNA MER1_type 0 225 1 4 868 576 107 0 0 chr9 37190181 37190284 -86885888 + (TC)n Simple_repeat Simple_repeat 1 103 0 4 868 216 0 0 0 chr9 37190286 37190310 -86885862 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 868 593 296 7 0 chr9 37190403 37190545 -86885627 - B4 SINE B4 -148 144 2 4 868 234 367 36 18 chr9 37190724 37190835 -86885337 - MIRb SINE MIR -119 149 37 4 868 1194 145 87 5 chr9 37191180 37191388 -86884784 + URR1B DNA MER1_type 1 225 0 4 868 194 289 36 12 chr9 37191617 37191701 -86884471 - MIR SINE MIR -115 147 62 4 868 275 259 0 66 chr9 37194060 37194151 -86882021 + L2a LINE L2 3333 3417 -9 4 868 333 68 0 0 chr9 37194284 37194328 -86881844 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 4 868 237 311 124 57 chr9 37194340 37194534 -86881638 - L2c LINE L2 -2 3385 3179 4 868 189 289 0 0 chr9 37194824 37194876 -86881296 + L3 LINE CR1 2636 2687 -1802 4 868 369 344 88 77 chr9 37195732 37195939 -86880233 + L1MEe LINE L1 890 1091 -5218 4 868 532 314 51 0 chr9 37195939 37196095 -86880077 + RSINE1 SINE B4 2 165 0 4 868 369 344 88 77 chr9 37196095 37196137 -86880035 + L1MEe LINE L1 1092 1126 -5183 4 868 427 246 27 18 chr9 37196137 37196249 -86879923 + PB1D10 SINE Alu 5 117 0 4 868 369 344 88 77 chr9 37196249 37196464 -86879708 + L1MEe LINE L1 1127 1360 -4949 4 868 1397 71 38 0 chr9 37196482 37196666 -86879506 + B2_Mm1t SINE B2 1 191 -2 4 868 393 243 125 135 chr9 37196666 37196823 -86879349 - B3A SINE B2 0 198 43 4 868 1269 34 0 0 chr9 37196823 37196970 -86879202 - B1_Mus2 SINE Alu 0 147 1 4 868 393 243 125 135 chr9 37196970 37197012 -86879160 - B3A SINE B2 -156 42 1 4 868 716 241 0 27 chr9 37197031 37197180 -86878992 - B1_Mur2 SINE Alu -3 146 2 4 868 1125 203 39 0 chr9 37197237 37197444 -86878728 - B3 SINE B2 0 216 2 4 868 455 87 14 0 chr9 37197553 37197622 -86878550 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 868 616 279 122 27 chr9 37198276 37198616 -86877556 + L1MEe LINE L1 2159 2539 -3800 4 868 381 274 66 59 chr9 37198627 37198763 -86877409 + ID_B1 SINE B4 84 220 -4 4 868 235 288 45 0 chr9 37198791 37198857 -86877315 + ID4_ SINE ID 14 82 -1 4 868 425 219 31 20 chr9 37198884 37198982 -86877190 - RLTR23 LTR ERV1 0 430 332 4 868 1315 250 38 38 chr9 37199045 37199401 -86876771 + RLTR22_Mur LTR ERVK 415 775 -1073 4 868 2886 71 0 17 chr9 37199401 37199803 -86876369 - L1_Mus4 LINE L1 -1 6635 6241 4 868 1315 250 38 38 chr9 37199803 37199837 -86876335 + RLTR22_Mur LTR ERVK 776 805 -1043 4 868 255 279 187 37 chr9 37199888 37200005 -86876167 + RLTR22_Mur LTR ERVK 1589 1725 -123 4 868 343 260 68 132 chr9 37200005 37200264 -86875908 - RLTR13D5 LTR ERVK 0 1023 783 4 868 30 69 0 0 chr9 37200432 37200490 -86875682 + AT_rich Low_complexity Low_complexity 1 58 0 4 868 280 235 148 0 chr9 37200817 37200898 -86875274 - RLTR13D5 LTR ERVK -1021 93 1 4 868 238 79 0 0 chr9 37200914 37200952 -86875220 + B1_Mur4 SINE Alu 112 149 -1 4 868 258 32 0 0 chr9 37200952 37200983 -86875189 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 4 868 655 244 32 0 chr9 37201482 37201605 -86874567 + B3 SINE B2 4 130 -86 4 868 1484 17 74 0 chr9 37201632 37201808 -86874364 - B2_Mm1a SINE B2 -3 190 2 4 868 390 318 73 90 chr9 37201812 37202057 -86874115 + L1MEe LINE L1 4099 4339 -1980 4 868 653 343 60 69 chr9 37202085 37202533 -86873639 - MLT1H LTR MaLR -15 534 91 4 868 404 82 16 0 chr9 37202569 37202630 -86873542 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 868 265 211 0 0 chr9 37202641 37202693 -86873479 - RSINE1 SINE B4 -35 130 79 4 868 232 222 106 47 chr9 37202751 37202836 -86873336 - MLT1H LTR MaLR -455 94 5 4 868 334 269 143 27 chr9 37202845 37203044 -86873128 + L1MEe LINE L1 4579 4809 -1510 4 868 575 312 16 50 chr9 37203064 37203104 -86873068 - ORR1D1 LTR MaLR -194 176 142 4 868 1114 83 0 40 chr9 37203104 37203254 -86872918 + B1_Mus1 SINE Alu 3 146 -2 4 868 801 104 0 0 chr9 37203254 37203398 -86872774 + (CAAAA)n Simple_repeat Simple_repeat 2 145 0 4 868 771 190 0 1 chr9 37203398 37203538 -86872634 - ORR1D1 LTR MaLR -229 141 1 4 868 352 230 23 0 chr9 37203541 37203628 -86872544 + PB1D10 SINE Alu 9 97 -20 4 868 488 16 16 0 chr9 37203630 37203691 -86872481 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 4 868 219 336 118 0 chr9 37203895 37203925 -86872247 - B1F2 SINE Alu 0 149 27 4 868 358 275 12 0 chr9 37203925 37204005 -86872167 - ID_B1 SINE B4 -36 188 108 4 868 238 330 22 22 chr9 37203931 37204021 -86872151 + YREP_Mm Unknown Unknown 217 306 -1506 4 868 555 277 63 14 chr9 37204077 37204220 -86871952 - MLT1A1 LTR MaLR 0 408 259 4 868 2085 206 22 15 chr9 37204270 37204678 -86871494 + MTC LTR MaLR 1 411 -10 4 868 623 333 42 17 chr9 37204784 37205022 -86871150 + MER90a LTR ERV1 371 614 0 4 868 298 175 16 81 chr9 37205159 37205221 -86870951 + RSINE1 SINE B4 5 62 -103 4 868 504 0 0 0 chr9 37205279 37205335 -86870837 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 868 378 0 0 0 chr9 37205335 37205376 -86870796 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 868 776 223 114 0 chr9 37205614 37205807 -86870365 + B3 SINE B2 2 216 0 4 868 1118 73 0 0 chr9 37205828 37205965 -86870207 + B1_Mm SINE Alu 1 137 -10 4 868 228 35 0 0 chr9 37205965 37205994 -86870178 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 868 767 57 0 9 chr9 37205995 37206101 -86870071 + (GAA)n Simple_repeat Simple_repeat 3 107 0 4 868 180 0 0 0 chr9 37206529 37206549 -86869623 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 868 218 270 63 63 chr9 37206698 37206777 -86869395 - MIRc SINE MIR -44 164 86 4 868 232 102 20 20 chr9 37207864 37207914 -86868258 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 4 868 294 200 267 12 chr9 37207919 37208005 -86868167 - PB1D10 SINE Alu 0 117 10 4 868 330 278 33 50 chr9 37208696 37208817 -86867355 - MIRb SINE MIR -62 206 88 4 868 1234 34 7 0 chr9 37208883 37209030 -86867142 - B1_Mus1 SINE Alu 0 148 1 4 868 495 0 0 0 chr9 37209889 37209944 -86866228 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 868 204 40 0 0 chr9 37209944 37209968 -86866204 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 868 782 298 57 18 chr9 37211179 37211459 -86864713 + B4A SINE B4 2 292 0 4 868 468 358 25 6 chr9 37212775 37212938 -86863234 + MER5A DNA MER1_type 9 174 -15 4 868 219 389 48 30 chr9 37216411 37216632 -86859540 - MIR SINE MIR -13 255 31 4 868 233 296 0 0 chr9 37217012 37217066 -86859106 + tRNA-Ala-GCY_ tRNA tRNA 9 62 -13 4 868 206 118 0 0 chr9 37217066 37217100 -86859072 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 4 868 246 309 0 0 chr9 37217204 37217259 -86858913 + polypyrimidine Low_complexity Low_complexity 2 56 0 4 868 365 172 31 0 chr9 37217261 37217325 -86858847 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 4 868 193 308 168 17 chr9 37217657 37217776 -86858396 - MIRb SINE MIR -56 212 76 4 868 478 298 0 0 chr9 37219404 37219508 -86856664 + PB1D10 SINE Alu 9 112 -5 4 868 303 28 0 0 chr9 37219957 37219993 -86856179 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 868 700 270 5 53 chr9 37220097 37220304 -86855868 + B3A SINE B2 2 198 0 4 868 261 188 62 0 chr9 37220821 37220885 -86855287 + (CTAA)n Simple_repeat Simple_repeat 2 69 0 4 868 201 74 0 0 chr9 37222707 37222734 -86853438 + (CTTTG)n Simple_repeat Simple_repeat 4 30 0 4 868 552 250 60 0 chr9 37222735 37222851 -86853321 - ID_B1 SINE B4 -12 212 90 4 868 450 0 0 0 chr9 37222853 37222903 -86853269 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 868 326 282 78 107 chr9 37223154 37223396 -86852776 + ORR1E LTR MaLR 90 324 -35 4 869 396 0 0 0 chr9 37225854 37225898 -86850274 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 869 250 93 0 53 chr9 37227883 37227940 -86848232 + (TCTCTG)n Simple_repeat Simple_repeat 5 58 0 4 869 575 167 11 0 chr9 37227956 37228046 -86848126 - ID_B1 SINE B4 -9 215 125 4 869 22 35 0 0 chr9 37228760 37228789 -86847383 + AT_rich Low_complexity Low_complexity 1 29 0 4 869 686 155 49 8 chr9 37228805 37228935 -86847237 - B1_Mur1 SINE Alu -1 148 12 4 869 750 288 60 87 chr9 37231131 37231431 -86844741 + B4A SINE B4 1 292 0 4 869 774 212 19 20 chr9 37233261 37233455 -86842717 + B3 SINE B2 1 193 -2 4 869 1476 63 5 5 chr9 37233490 37233681 -86842491 + B2_Mm1a SINE B2 1 191 -2 4 869 214 255 0 0 chr9 37235766 37235813 -86840359 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 869 634 221 16 81 chr9 37235905 37236028 -86840144 - B1_Mm SINE Alu -5 115 1 4 869 1121 144 112 61 chr9 37236141 37236187 -86839985 - URR1A DNA MER1_type -1 225 190 4 869 1353 93 11 0 chr9 37236187 37236369 -86839803 - B2_Mm1t SINE B2 -8 185 2 4 869 1121 144 112 61 chr9 37236369 37236536 -86839636 - URR1A DNA MER1_type -37 189 1 4 869 235 253 301 0 chr9 37238833 37238916 -86837256 + PB1D10 SINE Alu 10 117 0 4 869 576 29 0 0 chr9 37239623 37239693 -86836479 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 869 612 0 0 0 chr9 37240988 37241056 -86835116 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 869 449 127 0 12 chr9 37242934 37243014 -86833158 + (TC)n Simple_repeat Simple_repeat 1 79 0 4 869 478 185 194 0 chr9 37243724 37243832 -86832340 - ID_B1 SINE B4 -2 222 94 5 869 4039 47 2 1 chr9 37243912 37244577 -86831595 - L1_Mus1 LINE L1 -481 6086 5421 5 869 4171 34 0 0 chr9 37244579 37245053 -86831119 + L1_Mus1 LINE L1 6088 6561 -6 5 869 267 133 0 0 chr9 37245058 37245103 -86831069 + (A)n Simple_repeat Simple_repeat 1 45 0 5 869 306 0 0 0 chr9 37245670 37245704 -86830468 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 869 477 0 0 0 chr9 37245704 37245756 -86830416 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 869 237 269 90 65 chr9 37246381 37246536 -86829636 - L1MC LINE L1 -2088 5794 5636 5 869 285 29 0 0 chr9 37246597 37246631 -86829541 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 5 869 601 248 22 29 chr9 37246633 37246770 -86829402 - B1F2 SINE Alu -13 136 1 5 869 386 200 100 0 chr9 37246779 37246879 -86829293 - PB1D10 SINE Alu -7 110 1 5 869 315 0 0 0 chr9 37246978 37247013 -86829159 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 5 869 252 0 0 0 chr9 37247091 37247119 -86829053 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 5 869 308 194 82 82 chr9 37247119 37247192 -86828980 - ID_B1 SINE B4 -18 206 134 5 869 957 227 54 5 chr9 37247203 37247407 -86828765 - B3 SINE B2 -2 214 1 5 869 518 298 24 8 chr9 37247467 37247592 -86828580 - RSINE1 SINE B4 -36 129 3 5 869 528 279 63 25 chr9 37247613 37247771 -86828401 + RSINE1 SINE B4 2 165 0 5 869 420 238 442 0 chr9 37247808 37247955 -86828217 - B3 SINE B2 -2 214 3 5 869 1424 76 38 0 chr9 37247967 37248151 -86828021 - B2_Mm2 SINE B2 -4 191 1 5 869 351 283 27 45 chr9 37248198 37248309 -86827863 + PB1D9 SINE Alu 9 117 -3 5 869 263 284 10 93 chr9 37248376 37248473 -86827699 - PB1D10 SINE Alu -56 91 3 5 869 937 188 9 20 chr9 37248502 37248839 -86827333 - Lx9 LINE L1 -8 7636 7241 5 869 340 293 61 0 chr9 37248854 37248936 -86827236 + MLT1A0 LTR MaLR 205 291 -74 5 869 4159 11 60 0 chr9 37249352 37249817 -86826355 + MT2_Mm LTR ERVL 1 493 0 5 869 46513 17 0 0 chr9 37249817 37255181 -86820991 + MERVL-int LTR ERVL 1 5365 -120 5 869 410 152 12 37 chr9 37255181 37255263 -86820909 + ORR1A3-int LTR MaLR 561 640 -1323 5 869 305 0 0 0 chr9 37255263 37255301 -86820871 + MERVL-int LTR ERVL 5448 5485 0 5 869 3816 11 121 0 chr9 37255301 37255741 -86820431 + MT2_Mm LTR ERVL 1 493 0 5 869 270 231 0 0 chr9 37255746 37255798 -86820374 + RSINE1 SINE B4 86 137 -28 5 869 447 264 26 53 chr9 37255798 37255950 -86820222 - L2 LINE L2 -1809 1610 1463 5 869 273 316 165 38 chr9 37255987 37256253 -86819919 - L2 LINE L2 -2069 1350 1051 5 869 376 258 0 33 chr9 37256344 37256436 -86819736 + RSINE1 SINE B4 49 137 -28 5 869 1552 63 0 20 chr9 37256481 37256676 -86819496 + B2_Mm1a SINE B2 1 191 -2 5 869 470 260 85 63 chr9 37256714 37256985 -86819187 - L2 LINE L2 -2429 990 714 5 869 921 142 14 0 chr9 37257006 37257147 -86819025 + B1_Mur3 SINE Alu 1 143 -6 5 869 49 0 0 0 chr9 37257147 37257196 -86818976 + AT_rich Low_complexity Low_complexity 1 49 0 5 869 260 302 174 0 chr9 37257249 37257335 -86818837 - L2 LINE L2 -2791 628 528 5 869 848 245 26 16 chr9 37258162 37258184 -86817988 - ID_B1 SINE B4 -21 203 180 5 869 3288 65 0 2 chr9 37258184 37258588 -86817584 - MTB_Mm LTR MaLR 0 407 5 5 869 848 245 26 16 chr9 37258588 37258756 -86817416 - ID_B1 SINE B4 -45 179 11 5 869 332 353 64 16 chr9 37258923 37259110 -86817062 - MIR SINE MIR -26 236 41 5 869 266 0 0 29 chr9 37259700 37259735 -86816437 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 869 186 167 0 0 chr9 37260001 37260037 -86816135 + T-rich Low_complexity Low_complexity 5 40 0 5 869 187 229 27 67 chr9 37260400 37260475 -86815697 - L2c LINE L2 -108 3279 3208 5 869 434 250 73 9 chr9 37260608 37260717 -86815455 - PB1D9 SINE Alu 0 120 5 5 869 751 96 64 29 chr9 37261305 37261445 -86814727 + BC1_Mm scRNA scRNA 1 145 -7 5 869 662 271 0 28 chr9 37262299 37262443 -86813729 - ID_B1 SINE B4 -6 218 79 5 869 477 0 0 0 chr9 37262983 37263036 -86813136 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 869 21 0 0 0 chr9 37263221 37263242 -86812930 + AT_rich Low_complexity Low_complexity 1 21 0 5 869 252 273 0 0 chr9 37263242 37263297 -86812875 + C-rich Low_complexity Low_complexity 1 55 0 5 869 766 273 13 0 chr9 37263309 37263463 -86812709 - B3A SINE B2 -33 165 10 5 869 279 0 0 0 chr9 37265502 37265533 -86810639 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 869 433 238 19 0 chr9 37265742 37265847 -86810325 - BC1_Mm scRNA scRNA -43 109 3 5 869 522 198 83 0 chr9 37265953 37266049 -86810123 + B1_Mur3 SINE Alu 1 104 -45 5 869 1033 262 54 65 chr9 37266050 37266528 -86809644 + L1MC5 LINE L1 7043 7515 -446 5 869 561 284 6 47 chr9 37266792 37266962 -86809210 - RSINE1 SINE B4 0 165 3 5 869 193 175 75 0 chr9 37267026 37267066 -86809106 - L4 LINE RTE -756 1273 1231 5 869 362 246 36 65 chr9 37269367 37269506 -86806666 - MER5A1 DNA MER1_type -2 164 30 5 869 335 179 64 128 chr9 37269768 37269877 -86806295 + PB1D7 SINE Alu 47 148 -1 5 869 22 35 0 0 chr9 37270191 37270220 -86805952 + AT_rich Low_complexity Low_complexity 1 29 0 5 869 1446 52 0 40 chr9 37270223 37270422 -86805750 + B2_Mm2 SINE B2 2 192 -3 5 869 810 196 230 6 chr9 37270935 37271109 -86805063 + B3 SINE B2 1 213 -3 5 869 273 29 0 0 chr9 37271173 37271207 -86804965 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 869 2474 150 63 17 chr9 37271221 37271741 -86804431 - RMER1B Other Other -6 1060 493 5 869 539 270 134 24 chr9 37271728 37271856 -86804316 - RMER1A Other Other -747 283 133 5 869 396 0 0 0 chr9 37271856 37271900 -86804272 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 869 539 270 134 24 chr9 37271900 37271980 -86804192 - RMER1A Other Other -898 132 52 5 869 2174 132 20 11 chr9 37271980 37272332 -86803840 + RLTR28 LTR ERVL 158 512 -12 5 869 216 380 0 14 chr9 37272431 37272503 -86803669 + ID4_ SINE ID 2 72 -11 5 869 288 341 16 3 chr9 37272672 37272774 -86803398 + ID4_ SINE ID 5 107 -45 5 869 432 213 21 84 chr9 37272876 37273066 -86803106 + RMER17C LTR ERVK 97 274 -136 5 869 234 0 0 0 chr9 37273117 37273143 -86803029 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 869 244 321 38 13 chr9 37273146 37273225 -86802947 - ID4_ SINE ID -1 82 2 5 869 274 207 0 49 chr9 37273252 37273313 -86802859 - ID_B1 SINE B4 -3 221 164 5 869 234 0 0 0 chr9 37274161 37274187 -86801985 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 5 869 567 228 160 7 chr9 37274201 37274351 -86801821 - B3 SINE B2 -42 174 2 5 869 486 0 0 0 chr9 37274616 37274670 -86801502 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 869 607 225 0 18 chr9 37274683 37274796 -86801376 - B1_Mur2 SINE Alu -33 116 6 5 869 1054 80 65 0 chr9 37274831 37274969 -86801203 - B1_Mus2 SINE Alu 0 147 1 5 869 1044 91 28 7 chr9 37274973 37275117 -86801055 - B1_Mus1 SINE Alu 0 148 2 5 869 666 314 6 12 chr9 37275147 37275308 -86800864 + B3A SINE B2 1 160 -38 5 869 186 43 0 0 chr9 37275321 37275344 -86800828 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 869 756 136 247 0 chr9 37275439 37275601 -86800571 + MTD LTR MaLR 182 383 -36 5 869 234 0 0 0 chr9 37275631 37275657 -86800515 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 869 1741 10 0 5 chr9 37275747 37275941 -86800231 - B2_Mm1a SINE B2 0 193 1 5 869 1791 115 15 18 chr9 37275999 37276028 -86800144 - ORR1A4 LTR MaLR -8 321 295 5 869 4706 53 2 55 chr9 37276028 37276577 -86799595 + LTRIS_Mus LTR ERV1 1 532 -55 5 869 1278 48 0 0 chr9 37276577 37276724 -86799448 - B1_Mus1 SINE Alu 0 148 2 5 869 4706 53 2 55 chr9 37276724 37276794 -86799378 + LTRIS_Mus LTR ERV1 533 587 0 5 869 1791 116 15 19 chr9 37276794 37277041 -86799131 - ORR1A4 LTR MaLR -34 360 49 5 869 1200 75 0 0 chr9 37277041 37277187 -86798985 + B1_Mus2 SINE Alu 2 147 0 5 869 1480 155 48 109 chr9 37277187 37277288 -86798884 - ORR1A4 LTR MaLR -296 98 1 5 869 308 24 24 0 chr9 37278435 37278476 -86797696 + (TTA)n Simple_repeat Simple_repeat 2 43 0 5 869 240 254 29 29 chr9 37278486 37278555 -86797617 + MER21B LTR ERV1 48 116 -747 5 869 1136 296 91 24 chr9 37278587 37279050 -86797122 + MER21B LTR ERV1 184 677 -186 5 869 845 183 0 7 chr9 37279142 37279285 -86796887 - B1_Mus1 SINE Alu -1 147 6 5 869 998 229 112 112 chr9 37279490 37279864 -86796308 - MTE2b LTR MaLR -1 378 5 5 869 3263 45 2 24 chr9 37280109 37280518 -86795654 + MTB LTR MaLR 1 400 0 5 869 568 286 47 0 chr9 37280850 37281042 -86795130 - B3 SINE B2 -14 202 2 5 869 273 400 19 0 chr9 37281062 37281217 -86794955 - ERVL-E-int LTR ERVL -2519 3148 2991 5 869 368 172 237 0 chr9 37281430 37281523 -86794649 - RLTR23 LTR ERV1 -296 134 20 5 869 1113 128 145 30 chr9 37281545 37281779 -86794393 + RLTR23 LTR ERV1 127 387 -43 5 869 676 206 0 0 chr9 37281795 37281931 -86794241 + B1_Mus2 SINE Alu 12 147 0 5 869 399 257 166 14 chr9 37282075 37282292 -86793880 + RLTR15 LTR ERVK 45 294 -65 5 869 392 104 15 0 chr9 37282467 37282534 -86793638 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 869 320 319 64 0 chr9 37282776 37282917 -86793255 - MLT1H LTR MaLR -301 248 99 5 869 401 336 60 39 chr9 37283001 37283233 -86792939 - L1MC LINE L1 -2235 5647 5411 5 869 428 248 57 9 chr9 37283707 37283813 -86792359 + PB1D10 SINE Alu 6 116 -1 5 869 630 0 0 0 chr9 37284183 37284253 -86791919 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 5 869 1203 43 0 0 chr9 37284254 37284394 -86791778 - B1_Mm SINE Alu -6 141 2 5 869 529 254 8 23 chr9 37284428 37284557 -86791615 - B1F SINE Alu -1 148 22 5 869 456 210 70 0 chr9 37284946 37285046 -86791126 - B1F2 SINE Alu 0 149 43 5 869 260 189 19 0 chr9 37285001 37285054 -86791118 - 4.5SRNA scRNA scRNA -8 86 33 5 869 599 211 30 23 chr9 37285096 37285227 -86790945 - B1_Mur2 SINE Alu -15 134 3 5 869 488 281 63 32 chr9 37285261 37285379 -86790793 - RSINE1 SINE B4 0 165 40 6 869 4127 65 2 4 chr9 37285379 37285892 -86790280 + RLTR1B LTR ERV1 1 512 0 6 869 488 281 63 32 chr9 37285892 37285931 -86790241 - RSINE1 SINE B4 -126 39 3 6 869 253 194 32 16 chr9 37286227 37286269 -86789903 + polypyrimidine Low_complexity Low_complexity 23 65 0 6 869 1416 88 5 20 chr9 37286269 37286465 -86789707 - B2_Mm1a SINE B2 0 193 1 6 869 253 194 32 16 chr9 37286465 37286485 -86789687 + polypyrimidine Low_complexity Low_complexity 2 22 0 6 869 261 0 0 0 chr9 37286489 37286518 -86789654 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 869 220 294 0 0 chr9 37286519 37286570 -86789602 - ID4 SINE ID -25 58 8 6 869 203 179 0 25 chr9 37286571 37286611 -86789561 + CT-rich Low_complexity Low_complexity 2 40 0 6 869 2427 149 153 4 chr9 37286637 37287128 -86789044 - RMER15 LTR ERVL -11 564 1 6 869 657 175 0 9 chr9 37287128 37287242 -86788930 - B1_Mur1 SINE Alu -29 120 8 6 869 902 35 9 0 chr9 37287253 37287367 -86788805 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 6 869 739 189 23 8 chr9 37287367 37287500 -86788672 - B1_Mur3 SINE Alu -13 136 2 6 869 501 17 0 0 chr9 37287623 37287681 -86788491 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 869 240 111 0 0 chr9 37287681 37287716 -86788456 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 869 1227 109 161 12 chr9 37287716 37287958 -86788214 + RLTR9E LTR ERVK 52 329 -80 6 869 1444 59 16 26 chr9 37287993 37288184 -86787988 - B2_Mm2 SINE B2 -5 190 2 6 869 453 48 0 0 chr9 37288191 37288205 -86787967 + (T)n Simple_repeat Simple_repeat 1 14 0 6 869 1133 48 7 45 chr9 37288205 37288359 -86787813 - B1_Mus1 SINE Alu 0 148 1 6 869 453 48 0 0 chr9 37288359 37288406 -86787766 + (T)n Simple_repeat Simple_repeat 1 47 0 6 869 250 241 22 98 chr9 37288409 37288501 -86787671 + MT2B LTR ERVL 154 238 -363 6 869 348 244 11 32 chr9 37288423 37288516 -86787656 + PB1D9 SINE Alu 6 97 -53 6 869 250 329 0 27 chr9 37288508 37288583 -86787589 + B3 SINE B2 26 98 -118 6 869 306 219 135 14 chr9 37288592 37288666 -86787506 + RSINE1 SINE B4 66 148 -17 6 869 286 228 78 10 chr9 37288872 37288974 -86787198 + L1M5 LINE L1 5384 5492 -632 6 869 300 197 14 14 chr9 37289302 37289374 -86786798 + L1MC2 LINE L1 5892 5963 -381 6 869 245 203 50 17 chr9 37289387 37289447 -86786725 + RSINE1 SINE B4 26 87 -78 6 869 459 243 63 0 chr9 37289441 37289552 -86786620 - RSINE1 SINE B4 -36 129 12 6 869 1385 79 17 0 chr9 37289567 37289744 -86786428 + B2_Mm2 SINE B2 2 181 -14 6 869 248 0 31 0 chr9 37289749 37289781 -86786391 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 869 1280 240 11 0 chr9 37290127 37290402 -86785770 - Lx8 LINE L1 -957 6516 6239 6 869 379 353 14 42 chr9 37290499 37290627 -86785545 - ID_B1 SINE B4 -29 195 72 6 869 3123 126 17 67 chr9 37290627 37290717 -86785455 + RMER2 LTR ERV1 1 88 -479 6 869 3748 72 104 0 chr9 37290717 37291227 -86784945 - RMER2 LTR ERV1 -4 563 1 6 869 3123 126 17 67 chr9 37291227 37291733 -86784439 + RMER2 LTR ERV1 89 567 0 6 869 563 266 21 7 chr9 37291916 37292060 -86784112 - RSINE1 SINE B4 -4 161 16 6 869 624 270 35 0 chr9 37292089 37292263 -86783909 + B3 SINE B2 3 182 -34 6 869 1605 52 0 0 chr9 37292414 37292607 -86783565 + B2_Mm1a SINE B2 1 193 0 6 869 378 0 0 0 chr9 37293141 37293183 -86782989 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 869 1169 56 0 0 chr9 37293654 37293798 -86782374 + B1_Mus1 SINE Alu 5 148 0 6 869 1179 48 14 0 chr9 37293801 37293946 -86782226 + B1_Mm SINE Alu 1 147 0 6 869 198 0 0 0 chr9 37294228 37294250 -86781922 + (A)n Simple_repeat Simple_repeat 1 22 0 6 869 1258 27 0 7 chr9 37294301 37294449 -86781723 + B1_Mm SINE Alu 1 147 0 6 869 203 0 37 0 chr9 37294449 37294476 -86781696 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 6 869 257 273 320 0 chr9 37294490 37294662 -86781510 - MIR SINE MIR -21 241 15 6 869 241 281 49 0 chr9 37294702 37294784 -86781388 + PB1D10 SINE Alu 31 116 -1 6 869 455 127 154 19 chr9 37294832 37294936 -86781236 - B1_Mur1 SINE Alu -15 134 17 6 869 305 218 0 60 chr9 37295174 37295257 -86780915 + MT2B LTR ERVL 187 264 -337 6 869 766 64 0 9 chr9 37295183 37295293 -86780879 + B1_Mm SINE Alu 39 147 0 6 869 195 45 0 83 chr9 37295293 37295341 -86780831 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 6 869 415 260 211 11 chr9 37295375 37295550 -86780622 + B3 SINE B2 1 210 -6 6 869 694 145 69 42 chr9 37295784 37295928 -86780244 + B1_Mur4 SINE Alu 3 150 0 6 869 26 93 0 0 chr9 37297057 37297132 -86779040 + GC_rich Low_complexity Low_complexity 1 75 0 6 869 27 62 0 0 chr9 37297479 37297527 -86778645 + GC_rich Low_complexity Low_complexity 1 48 0 6 869 320 157 52 75 chr9 37299429 37299521 -86776651 - MTD LTR MaLR -14 405 276 6 869 1442 207 65 34 chr9 37299526 37299881 -86776291 - ORR1D1 LTR MaLR -8 366 1 6 869 881 250 44 127 chr9 37299882 37300010 -86776162 - MTD LTR MaLR -116 303 197 6 869 1206 61 0 0 chr9 37300010 37300157 -86776015 - B1_Mus2 SINE Alu 0 147 1 6 869 881 250 44 127 chr9 37300157 37300344 -86775828 - MTD LTR MaLR -223 196 14 6 869 27 0 0 0 chr9 37300357 37300384 -86775788 + AT_rich Low_complexity Low_complexity 1 27 0 6 869 252 246 0 0 chr9 37300461 37300522 -86775650 + ID4_ SINE ID 3 63 -20 6 869 324 277 34 53 chr9 37300819 37300959 -86775213 + B3A SINE B2 68 205 -11 6 869 788 127 17 0 chr9 37301078 37301196 -86774976 - B1_Mur3 SINE Alu -8 141 22 6 869 1019 99 42 0 chr9 37301204 37301346 -86774826 + B1_Mus1 SINE Alu 1 148 0 6 869 339 44 0 0 chr9 37301418 37301463 -86774709 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 6 869 1066 71 19 0 chr9 37301463 37301618 -86774554 - B2_Mm2 SINE B2 -36 159 2 6 869 741 256 16 26 chr9 37301621 37301810 -86774362 - B3A SINE B2 -11 187 1 6 869 699 216 64 59 chr9 37302159 37302361 -86773811 + B3 SINE B2 6 208 -8 6 869 559 267 0 7 chr9 37302414 37302550 -86773622 - ID_B1 SINE B4 -3 221 87 6 869 25 24 0 23 chr9 37302755 37302785 -86773387 + AT_rich Low_complexity Low_complexity 1 30 0 6 869 1258 71 95 0 chr9 37302785 37302954 -86773218 + B2_Mm1a SINE B2 1 185 -8 6 869 25 24 0 23 chr9 37302954 37302966 -86773206 + AT_rich Low_complexity Low_complexity 1 12 0 6 869 255 152 0 0 chr9 37303242 37303288 -86772884 + T-rich Low_complexity Low_complexity 1 46 0 6 869 440 259 68 158 chr9 37304299 37304533 -86771639 + ID_B1 SINE B4 1 213 -11 6 869 22 0 0 0 chr9 37304623 37304645 -86771527 + AT_rich Low_complexity Low_complexity 1 22 0 6 869 529 271 23 0 chr9 37304656 37304785 -86771387 + B1F SINE Alu 3 134 -15 6 869 890 304 61 12 chr9 37304786 37305112 -86771060 - MTEa LTR MaLR -8 371 30 6 869 469 274 81 24 chr9 37305176 37305385 -86770787 + ID_B1 SINE B4 4 224 0 6 869 649 284 10 15 chr9 37305422 37305619 -86770553 + MER3 DNA MER1_type 6 201 -8 6 869 917 198 67 29 chr9 37306126 37306334 -86769838 + B3 SINE B2 1 216 0 6 869 433 284 0 9 chr9 37308378 37308488 -86767684 - ID_B1 SINE B4 -26 198 90 6 869 1486 54 22 0 chr9 37308579 37308763 -86767409 + B2_Mm2 SINE B2 1 188 -7 6 869 503 296 0 56 chr9 37308993 37309154 -86767018 - RSINE1 SINE B4 -9 156 5 6 869 301 340 0 0 chr9 37309198 37309210 -86766962 - RSINE1 SINE B4 -69 96 3 6 869 659 37 0 0 chr9 37309210 37309292 -86766880 - B2_Mm2 SINE B2 -112 83 2 6 869 408 239 0 0 chr9 37309319 37309407 -86766765 - B3 SINE B2 -6 210 123 6 869 402 323 81 0 chr9 37310136 37310260 -86765912 - B1F2 SINE Alu -8 141 8 6 869 291 333 50 50 chr9 37310260 37310275 -86765897 - ID_B1 SINE B4 -8 216 78 6 869 765 170 242 0 chr9 37310324 37310506 -86765666 + URR1A DNA MER1_type 1 226 0 6 869 399 21 0 0 chr9 37310633 37310681 -86765491 + (TCCA)n Simple_repeat Simple_repeat 4 51 0 6 869 834 174 14 0 chr9 37310687 37310825 -86765347 - B1_Mur2 SINE Alu -8 141 2 6 869 25 31 0 0 chr9 37311546 37311578 -86764594 + AT_rich Low_complexity Low_complexity 1 32 0 6 869 217 305 36 24 chr9 37311687 37311771 -86764401 - L2a LINE L2 0 3426 3342 6 869 436 277 56 48 chr9 37311773 37311898 -86764274 - ID_B1 SINE B4 -6 218 93 6 869 293 254 0 0 chr9 37311966 37312021 -86764151 - ID4_ SINE ID -2 81 27 6 869 222 301 132 0 chr9 37312099 37312182 -86763990 + PB1D9 SINE Alu 22 115 -5 6 869 781 189 7 47 chr9 37313245 37313395 -86762777 - B1_Mus1 SINE Alu -2 146 3 6 869 445 323 112 0 chr9 37313637 37313860 -86762312 - MIR SINE MIR -2 260 13 6 869 848 211 93 21 chr9 37314049 37314243 -86761929 - ID_B1 SINE B4 -15 209 2 6 869 279 0 0 0 chr9 37314256 37314287 -86761885 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 869 228 35 0 0 chr9 37314287 37314315 -86761857 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 869 1400 68 16 21 chr9 37314695 37314889 -86761283 + B2_Mm2 SINE B2 3 195 0 6 869 748 218 42 12 chr9 37315113 37315280 -86760892 - B3 SINE B2 -40 176 5 6 869 213 217 22 0 chr9 37315971 37316017 -86760155 + PB1D10 SINE Alu 1 47 -70 6 869 1517 171 72 42 chr9 37316035 37316394 -86759778 - MTD LTR MaLR -42 377 8 7 869 231 209 132 15 chr9 37316409 37316477 -86759695 + PB1D7 SINE Alu 44 119 -1 7 869 450 299 14 7 chr9 37316745 37316883 -86759289 - ID_B1 SINE B4 0 224 86 7 869 1017 193 33 19 chr9 37317085 37317296 -86758876 - B3 SINE B2 0 216 3 7 869 2801 50 55 0 chr9 37317509 37317870 -86758302 - L1Md_F2 LINE L1 0 6582 6202 7 869 216 0 0 0 chr9 37317886 37317910 -86758262 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 869 269 221 0 49 chr9 37317910 37317982 -86758190 - ID_B1 SINE B4 -9 215 147 7 869 251 307 0 62 chr9 37317936 37318016 -86758156 - MT2B LTR ERVL -337 264 190 7 869 673 35 0 0 chr9 37317982 37317996 -86758176 - B1_Mm SINE Alu -9 138 53 7 869 474 257 21 42 chr9 37318032 37318174 -86757998 - RSINE1 SINE B4 -24 141 3 7 869 410 256 39 116 chr9 37318830 37318985 -86757187 + B4 SINE B4 76 218 -74 7 869 808 151 7 7 chr9 37318854 37318994 -86757178 + B1_Mur4 SINE Alu 10 149 -1 7 869 216 182 0 0 chr9 37319554 37319598 -86756574 + T-rich Low_complexity Low_complexity 2 45 0 7 869 572 185 69 0 chr9 37319753 37319883 -86756289 - B1_Mur2 SINE Alu 0 149 11 7 869 380 267 83 50 chr9 37319756 37319937 -86756235 - B4A SINE B4 -68 224 38 7 869 318 233 40 14 chr9 37319937 37320011 -86756161 - ID2 SINE ID -6 77 2 7 869 446 239 92 0 chr9 37320153 37320262 -86755910 - PB1D7 SINE Alu -1 119 1 7 869 324 0 0 0 chr9 37320352 37320388 -86755784 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 869 1230 22 0 0 chr9 37320388 37320527 -86755645 - B1_Mus2 SINE Alu -8 139 1 7 869 358 346 67 28 chr9 37321135 37321420 -86754752 - L3 LINE CR1 -410 4079 3784 7 869 24 32 0 0 chr9 37324574 37324605 -86751567 + AT_rich Low_complexity Low_complexity 1 31 0 7 869 318 274 45 45 chr9 37327341 37327452 -86748720 - RSINE1 SINE B4 -54 111 1 7 869 603 331 47 25 chr9 37328173 37328452 -86747720 + B4A SINE B4 6 290 -2 7 869 346 255 10 31 chr9 37328895 37328992 -86747180 + B3A SINE B2 2 96 -102 7 869 1067 30 15 0 chr9 37329230 37329364 -86746808 + (TCCCC)n Simple_repeat Simple_repeat 3 138 0 7 869 730 167 0 0 chr9 37329391 37329511 -86746661 - B1_Mus1 SINE Alu -23 125 6 7 869 570 160 20 0 chr9 37329865 37329965 -86746207 + PB1D9 SINE Alu 9 110 -10 7 869 302 293 0 0 chr9 37330156 37330231 -86745941 - MER3 DNA MER1_type -134 75 1 7 869 26 30 0 0 chr9 37331722 37331755 -86744417 + AT_rich Low_complexity Low_complexity 1 33 0 7 869 755 221 7 0 chr9 37332474 37332623 -86743549 + B1_Mur4 SINE Alu 1 150 0 7 869 711 239 88 31 chr9 37333542 37333736 -86742436 - B3 SINE B2 -10 206 2 7 869 516 180 242 24 chr9 37334129 37334294 -86741878 + B3 SINE B2 1 201 -15 7 869 243 0 0 0 chr9 37339402 37339429 -86736743 + (GGGTG)n Simple_repeat Simple_repeat 5 31 0 7 869 482 196 91 27 chr9 37339491 37339601 -86736571 - PB1D9 SINE Alu 0 120 4 7 869 503 255 6 101 chr9 37339721 37339900 -86736272 - RSINE1 SINE B4 0 165 4 7 869 621 156 0 103 chr9 37340112 37340131 -86736041 - B1_Mus1 SINE Alu 0 148 135 7 869 867 20 0 0 chr9 37340131 37340232 -86735940 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 7 869 631 156 0 103 chr9 37340232 37340348 -86735824 - B1_Mur2 SINE Alu -14 134 26 7 869 209 293 0 0 chr9 37340433 37340491 -86735681 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 7 869 432 0 0 0 chr9 37340491 37340539 -86735633 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 869 659 278 28 28 chr9 37340547 37340725 -86735447 - B4 SINE B4 -18 274 97 7 869 375 265 0 24 chr9 37341204 37341289 -86734883 - B4 SINE B4 -207 85 3 7 869 342 100 0 0 chr9 37341322 37341382 -86734790 + (T)n Simple_repeat Simple_repeat 1 60 0 7 869 243 0 0 0 chr9 37342508 37342535 -86733637 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 869 276 297 0 0 chr9 37342542 37342606 -86733566 - ID4_ SINE ID -16 67 4 7 869 348 257 13 13 chr9 37342614 37342689 -86733483 - PB1D7 SINE Alu -8 112 38 7 869 229 68 45 0 chr9 37342807 37342851 -86733321 + (TTG)n Simple_repeat Simple_repeat 1 46 0 7 869 599 217 23 23 chr9 37342855 37342987 -86733185 - B1_Mur2 SINE Alu -17 132 1 7 869 349 219 168 81 chr9 37343070 37343219 -86732953 - RSINE1 SINE B4 0 165 4 7 869 288 309 19 58 chr9 37343334 37343360 -86732812 - ID4_ SINE ID -49 103 5 7 869 241 338 26 0 chr9 37343360 37343437 -86732735 - ID SINE ID -141 83 5 7 869 376 268 80 16 chr9 37343478 37343603 -86732569 - B4 SINE B4 -3 289 157 7 869 225 307 95 38 chr9 37343540 37343645 -86732527 - ZP3AR Satellite Satellite -75 137 27 7 869 223 342 40 0 chr9 37343759 37343835 -86732337 - MIRb SINE MIR -82 186 108 7 869 269 183 151 17 chr9 37344782 37344954 -86731218 - RMER17D LTR ERVK -343 546 352 7 869 188 203 66 33 chr9 37346099 37346160 -86730012 - L2 LINE L2 -363 3056 2994 7 869 522 0 0 0 chr9 37348285 37348343 -86727829 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 869 353 375 14 24 chr9 37348583 37348796 -86727376 + L3 LINE CR1 4113 4323 -166 7 869 193 57 57 0 chr9 37350516 37350551 -86725621 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 869 635 217 9 0 chr9 37350802 37350917 -86725255 - B1F2 SINE Alu 0 149 34 7 869 256 231 14 58 chr9 37350857 37350926 -86725246 - 4.5SRNA scRNA scRNA -6 88 23 7 869 251 307 13 0 chr9 37350937 37351012 -86725160 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 869 232 338 0 26 chr9 37351095 37351171 -86725001 - RSINE1 SINE B4 0 165 92 7 869 337 253 278 29 chr9 37351153 37351329 -86724843 - B4 SINE B4 -72 220 1 7 869 270 136 0 0 chr9 37352495 37352539 -86723633 + (T)n Simple_repeat Simple_repeat 1 44 0 7 869 26 30 0 0 chr9 37353549 37353582 -86722590 + GC_rich Low_complexity Low_complexity 1 33 0 7 869 225 0 0 0 chr9 37354544 37354569 -86721603 + (A)n Simple_repeat Simple_repeat 1 25 0 7 869 1181 75 60 49 chr9 37354569 37354752 -86721420 + B2_Mm2 SINE B2 3 187 -8 7 869 328 315 91 57 chr9 37354892 37355067 -86721105 + MIRb SINE MIR 88 268 0 7 869 211 219 0 0 chr9 37355380 37355421 -86720751 + CT-rich Low_complexity Low_complexity 3 43 0 7 869 358 227 27 0 chr9 37355432 37355507 -86720665 - ID4 SINE ID -2 81 5 7 870 235 266 10 14 chr9 37355681 37355750 -86720422 + PB1D10 SINE Alu 27 104 -23 7 870 585 0 0 0 chr9 37355750 37355815 -86720357 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 870 223 254 18 0 chr9 37355815 37355831 -86720341 + PB1 SINE Alu 105 121 -6 7 870 994 75 0 0 chr9 37355818 37355952 -86720220 - B1_Mus1 SINE Alu -5 143 10 7 870 639 203 27 34 chr9 37356344 37356492 -86719680 - B1F2 SINE Alu -1 148 2 7 870 213 301 40 14 chr9 37357447 37357521 -86718651 - MIRm SINE MIR -120 156 81 7 870 21 0 0 0 chr9 37358500 37358521 -86717651 + AT_rich Low_complexity Low_complexity 1 21 0 7 870 334 333 0 0 chr9 37358611 37358721 -86717451 + ID4_ SINE ID 2 111 -41 7 870 603 0 0 0 chr9 37358810 37358877 -86717295 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 7 870 1501 311 33 0 chr9 37361197 37361650 -86714522 - Lx8 LINE L1 -144 7329 6862 7 870 216 182 0 0 chr9 37361682 37361726 -86714446 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 7 870 699 298 91 12 chr9 37364588 37364829 -86711343 + MER2 DNA MER2_type 3 262 -83 7 870 432 264 26 19 chr9 37364854 37365039 -86711133 - B3A SINE B2 -9 207 1 7 870 530 278 162 46 chr9 37365342 37365589 -86710583 + B4A SINE B4 17 292 0 7 870 234 0 0 0 chr9 37365976 37366002 -86710170 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 870 23 0 0 0 chr9 37366464 37366487 -86709685 + AT_rich Low_complexity Low_complexity 1 23 0 7 870 315 0 0 0 chr9 37366487 37366522 -86709650 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 870 956 232 20 10 chr9 37366527 37366723 -86709449 - ID_B1 SINE B4 -23 201 4 7 870 207 0 0 0 chr9 37366834 37366857 -86709315 + (A)n Simple_repeat Simple_repeat 1 23 0 7 870 1428 77 16 0 chr9 37367341 37367523 -86708649 - B2_Mm2 SINE B2 -9 186 2 7 870 383 139 143 83 chr9 37367599 37367699 -86708473 + L1MA9 LINE L1 6118 6230 -82 7 870 2550 160 2 25 chr9 37367699 37368130 -86708042 - MTC LTR MaLR 0 421 1 7 870 383 139 143 83 chr9 37368130 37368162 -86708010 + L1MA9 LINE L1 6231 6258 -54 7 870 891 253 11 0 chr9 37368442 37368624 -86707548 + B3 SINE B2 27 210 -6 7 870 867 168 14 0 chr9 37369125 37369268 -86706904 - B1_Mus1 SINE Alu -1 147 3 7 870 1656 207 97 28 chr9 37369339 37369550 -86706622 - MTD LTR MaLR 0 419 190 7 870 1353 85 26 5 chr9 37369550 37369739 -86706433 + B2_Mm2 SINE B2 1 193 -2 7 870 1656 207 97 28 chr9 37369739 37369919 -86706253 - MTD LTR MaLR -230 189 1 7 870 378 0 0 0 chr9 37370870 37370912 -86705260 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 870 243 0 0 0 chr9 37370912 37370938 -86705234 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 870 228 158 0 0 chr9 37372329 37372386 -86703786 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 7 870 375 302 96 77 chr9 37372388 37372596 -86703576 + HAL1-3A_ME LINE L1 1968 2179 -679 7 870 22 35 0 0 chr9 37372605 37372634 -86703538 + AT_rich Low_complexity Low_complexity 1 29 0 7 870 786 221 93 11 chr9 37372634 37372817 -86703355 - B3 SINE B2 -17 199 2 7 870 877 159 14 0 chr9 37372833 37372978 -86703194 - B1_Mus2 SINE Alu 0 147 1 8 870 320 214 40 67 chr9 37373079 37373154 -86703018 - RSINE1 SINE B4 -84 81 9 8 870 181 314 0 0 chr9 37373744 37373795 -86702377 - MIRc SINE MIR -152 116 66 8 870 258 274 50 40 chr9 37374277 37374376 -86701796 - MTEa LTR MaLR 0 379 280 8 870 345 256 39 54 chr9 37374833 37374950 -86701222 + L2a LINE L2 3272 3423 -3 8 870 698 297 68 0 chr9 37375401 37375667 -86700505 + L3b LINE CR1 21 304 -178 8 870 319 298 8 73 chr9 37376780 37376903 -86699269 + PB1D10 SINE Alu 3 117 0 8 870 344 277 5 50 chr9 37376905 37377029 -86699143 + ID4_ SINE ID 2 120 -32 8 870 2850 273 61 47 chr9 37377835 37378757 -86697415 + Lx8 LINE L1 6535 7469 -4 8 870 877 261 37 0 chr9 37379360 37379575 -86696597 - Lx6 LINE L1 0 7460 7238 8 870 430 290 43 0 chr9 37380735 37380873 -86695299 - MIR3 SINE MIR -27 181 38 8 870 256 349 215 10 chr9 37381720 37381920 -86694252 + MIRb SINE MIR 22 262 -6 8 870 465 271 0 0 chr9 37382396 37382573 -86693599 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 870 1688 322 92 19 chr9 37384769 37385876 -86690296 + Lx8 LINE L1 6247 7465 -8 8 870 28 48 0 0 chr9 37385882 37385924 -86690248 + AT_rich Low_complexity Low_complexity 1 42 0 8 870 909 233 16 0 chr9 37385934 37386127 -86690045 + B3 SINE B2 1 196 -20 8 870 186 43 0 0 chr9 37386129 37386152 -86690020 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 870 315 0 0 0 chr9 37386171 37386206 -86689966 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 8 870 209 89 43 22 chr9 37386291 37386337 -86689835 + (TTG)n Simple_repeat Simple_repeat 2 48 0 8 870 505 284 21 21 chr9 37386337 37386481 -86689691 - MLT1A LTR MaLR -50 324 181 8 870 236 314 15 104 chr9 37386488 37386623 -86689549 + YREP_Mm Unknown Unknown 171 293 -1519 8 870 610 241 43 7 chr9 37386503 37386641 -86689531 - B1F SINE Alu -1 148 6 8 870 749 218 114 40 chr9 37386891 37387092 -86689080 + B3 SINE B2 1 216 0 8 870 304 217 94 55 chr9 37387237 37387364 -86688808 + L1MA6 LINE L1 6168 6299 -1 8 870 335 227 0 29 chr9 37387402 37387470 -86688702 + PB1D7 SINE Alu 55 120 0 8 870 247 104 20 20 chr9 37388089 37388138 -86688034 + (GGA)n Simple_repeat Simple_repeat 3 51 0 8 870 1244 84 6 0 chr9 37388138 37388317 -86687855 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 8 870 917 163 0 0 chr9 37389141 37389288 -86686884 - B1_Mus2 SINE Alu 0 147 1 8 870 1392 178 101 24 chr9 37389376 37389739 -86686433 - Lx7 LINE L1 0 7696 7060 8 870 6564 209 31 15 chr9 37389736 37390527 -86685645 - Lx7 LINE L1 -753 6943 6160 8 870 1152 62 7 0 chr9 37390527 37390672 -86685500 - B1_Mm SINE Alu 0 147 2 8 870 9355 159 44 14 chr9 37390672 37391735 -86684437 - Lx7 LINE L1 -1537 6159 5023 8 870 666 37 0 0 chr9 37391735 37391816 -86684356 + (TC)n Simple_repeat Simple_repeat 2 82 0 8 870 907 176 0 0 chr9 37391818 37391960 -86684212 - B1_Mur4 SINE Alu -6 144 3 8 870 9355 144 49 13 chr9 37391960 37392746 -86683426 - Lx7 LINE L1 -858 5022 4222 8 870 249 286 0 0 chr9 37393467 37393523 -86682649 - ID4 SINE ID -8 75 20 8 870 298 149 14 29 chr9 37393821 37393890 -86682282 + CT-rich Low_complexity Low_complexity 4 71 0 8 870 819 53 9 0 chr9 37393923 37394036 -86682136 - B1_Mus1 SINE Alu 0 148 35 8 870 391 252 10 0 chr9 37394694 37394793 -86681379 - LTR33 LTR ERVL 0 515 416 8 870 632 313 41 5 chr9 37394876 37395072 -86681100 - B3 SINE B2 -13 203 1 8 870 413 184 270 81 chr9 37395106 37395120 -86681052 - B3 SINE B2 -40 176 165 8 870 368 88 0 17 chr9 37395120 37395178 -86680994 + (TATG)n Simple_repeat Simple_repeat 4 60 0 8 870 432 184 270 81 chr9 37395178 37395311 -86680861 - B3A SINE B2 -52 164 1 8 870 368 314 84 35 chr9 37395504 37395808 -86680364 + ORR1E LTR MaLR 41 375 -4 8 870 369 284 212 16 chr9 37395812 37396005 -86680167 + Tigger5 DNA MER2_type 7 237 -2169 8 870 306 67 0 0 chr9 37396005 37396050 -86680122 + (TATG)n Simple_repeat Simple_repeat 2 46 0 8 870 308 109 0 0 chr9 37396055 37396101 -86680071 - B1_Mur3 SINE Alu -29 120 75 8 870 360 0 0 0 chr9 37396120 37396160 -86680012 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 8 870 308 109 0 0 chr9 37396164 37396210 -86679962 - B1_Mur3 SINE Alu -29 120 75 8 870 261 75 0 0 chr9 37396229 37396269 -86679903 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 8 870 716 174 0 0 chr9 37396273 37396394 -86679778 - B1_Mur4 SINE Alu -29 121 1 8 870 23 0 0 0 chr9 37396396 37396419 -86679753 + AT_rich Low_complexity Low_complexity 1 23 0 8 870 653 267 69 0 chr9 37396422 37396639 -86679533 + Tigger5 DNA MER2_type 2175 2406 0 8 870 311 335 105 6 chr9 37396936 37397107 -86679065 - LTR33 LTR ERVL -168 347 160 8 870 750 227 35 0 chr9 37397584 37397725 -86678447 - RSINE1 SINE B4 -17 148 3 8 870 207 204 0 0 chr9 37397806 37397850 -86678322 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 870 781 211 33 28 chr9 37397850 37398030 -86678142 - B3A SINE B2 -16 182 2 8 870 233 164 13 40 chr9 37398390 37398466 -86677706 + GA-rich Low_complexity Low_complexity 2 75 0 8 870 739 269 0 27 chr9 37398761 37398948 -86677224 - B3A SINE B2 -16 182 1 8 870 1705 140 56 67 chr9 37399022 37399336 -86676836 + ORR1B2 LTR MaLR 3 320 -47 8 870 1693 36 0 0 chr9 37399336 37399529 -86676643 + B2_Mm1a SINE B2 1 193 0 8 870 1705 140 56 67 chr9 37399529 37399573 -86676599 + ORR1B2 LTR MaLR 321 357 -10 8 870 280 303 106 76 chr9 37399680 37399944 -86676228 - HAL1 LINE L1 -2116 391 120 8 870 261 279 131 12 chr9 37400125 37400285 -86675887 - LTR50 LTR ERVL -60 735 557 8 870 471 252 155 0 chr9 37400356 37400614 -86675558 - LTR50 LTR ERVL -492 303 6 8 870 563 181 28 7 chr9 37400719 37400864 -86675308 + GA-rich Low_complexity Low_complexity 3 150 0 8 870 424 233 11 11 chr9 37401025 37401112 -86675060 + RSINE1 SINE B4 42 128 -37 8 870 383 68 17 0 chr9 37401126 37401185 -86674987 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 870 1330 199 66 0 chr9 37401218 37401474 -86674698 - ORR1D1 LTR MaLR 0 374 102 8 870 652 199 0 8 chr9 37401772 37401899 -86674273 + B1_Mus2 SINE Alu 21 146 -1 8 870 424 164 0 0 chr9 37401899 37401966 -86674206 - Lx LINE L1 -481 6173 6107 8 870 2689 147 6 41 chr9 37401967 37402458 -86673714 + Lx LINE L1 6181 6654 0 8 870 202 229 0 0 chr9 37402459 37402507 -86673665 + A-rich Low_complexity Low_complexity 1 48 0 8 870 847 247 0 0 chr9 37402515 37402705 -86673467 - B3 SINE B2 -10 206 17 8 870 381 297 0 0 chr9 37402719 37402820 -86673352 - ID_B1 SINE B4 -20 204 104 8 870 299 291 92 25 chr9 37402820 37402839 -86673333 - B1F1 SINE Alu -20 129 2 8 870 246 294 11 21 chr9 37403075 37403169 -86673003 - B1_Mm SINE Alu -54 93 1 8 870 439 284 71 76 chr9 37403211 37403409 -86672763 + B3A SINE B2 1 197 -1 8 870 684 36 0 0 chr9 37403436 37403519 -86672653 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 870 282 39 0 55 chr9 37403780 37403835 -86672337 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 8 870 233 284 188 31 chr9 37404334 37404494 -86671678 - MER20 DNA MER1_type -2 217 33 8 870 296 341 47 16 chr9 37404591 37404719 -86671453 - MLT1A LTR MaLR -242 132 1 8 870 1767 174 68 37 chr9 37405222 37405574 -86670598 - ORR1B2 LTR MaLR 0 367 5 8 870 213 39 0 0 chr9 37405577 37405603 -86670569 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 870 1274 89 33 6 chr9 37405603 37405783 -86670389 - B2_Mm2 SINE B2 -10 185 1 8 870 545 225 77 7 chr9 37405921 37406064 -86670108 - MTE2a LTR MaLR -8 371 219 8 870 347 224 0 4 chr9 37406134 37406206 -86669966 - B3A SINE B2 -103 113 44 8 870 623 340 40 71 chr9 37406226 37406549 -86669623 + MLT2B3 LTR ERVL 149 461 -93 8 870 180 0 0 0 chr9 37406558 37406578 -86669594 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 870 890 228 29 0 chr9 37406816 37407022 -86669150 + B3 SINE B2 4 215 -1 8 870 268 266 71 50 chr9 37407047 37407146 -86669026 + MLT1H-int LTR MaLR 757 857 -552 8 870 289 311 167 8 chr9 37407328 37407448 -86668724 + MLT1H-int LTR MaLR 1267 1405 -4 8 870 338 281 161 5 chr9 37407717 37407903 -86668269 - L2 LINE L2 -688 2731 2517 8 870 3588 195 44 62 chr9 37408033 37409122 -86667050 + RMER1B Other Other 146 1060 -6 8 870 537 252 8 8 chr9 37409132 37409252 -86666920 + PB1D9 SINE Alu 1 120 0 8 870 180 0 0 0 chr9 37409566 37409586 -86666586 + (TA)n Simple_repeat Simple_repeat 2 21 0 8 870 495 48 0 0 chr9 37409722 37409784 -86666388 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 8 870 506 282 130 48 chr9 37409918 37410234 -86665938 - L2 LINE L2 -905 2514 2173 8 870 213 121 0 0 chr9 37410512 37410545 -86665627 + (A)n Simple_repeat Simple_repeat 1 33 0 8 870 1097 74 0 69 chr9 37411516 37411675 -86664497 + B1_Mus1 SINE Alu 1 148 0 8 870 245 224 0 0 chr9 37411740 37411798 -86664374 - L1ME3 LINE L1 -1 6161 6104 8 870 236 285 79 132 chr9 37412696 37412886 -86663286 - MER63B DNA AcHobo -2 434 255 8 870 911 98 0 0 chr9 37414160 37414293 -86661879 - B1_Mus2 SINE Alu 0 147 15 8 870 381 308 25 0 chr9 37414323 37414443 -86661729 - PB1 SINE Alu -4 123 1 8 870 21 36 0 0 chr9 37414458 37414486 -86661686 + AT_rich Low_complexity Low_complexity 1 28 0 8 870 757 301 139 22 chr9 37415814 37416592 -86659580 - L1MC5 LINE L1 -119 7842 6974 8 870 589 234 51 13 chr9 37417173 37417329 -86658843 - B3A SINE B2 -35 163 2 8 870 447 19 0 0 chr9 37419234 37419286 -86656886 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 870 304 321 8 51 chr9 37419770 37419888 -86656284 + RSINE1 SINE B4 53 165 0 8 870 619 168 42 0 chr9 37419972 37420091 -86656081 - B1_Mus1 SINE Alu -1 147 24 8 870 696 153 0 8 chr9 37420338 37420457 -86655715 + B1_Mur4 SINE Alu 33 150 0 8 870 261 83 0 0 chr9 37421203 37421239 -86654933 + (T)n Simple_repeat Simple_repeat 1 36 0 9 870 198 0 0 0 chr9 37421268 37421290 -86654882 + (CCGCG)n Simple_repeat Simple_repeat 3 24 0 9 870 962 30 30 0 chr9 37424641 37424775 -86651397 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 9 870 531 198 9 18 chr9 37425006 37425119 -86651053 + B3A SINE B2 8 119 -79 9 870 396 0 0 0 chr9 37425128 37425172 -86651000 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 870 199 305 152 0 chr9 37425249 37425413 -86650759 + MIR SINE MIR 43 231 -31 9 870 487 266 35 7 chr9 37425458 37425602 -86650570 - L2a LINE L2 0 3426 3279 9 870 438 20 0 0 chr9 37425657 37425708 -86650464 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 870 458 167 0 0 chr9 37426123 37426201 -86649971 - B3A SINE B2 -120 78 1 9 870 186 43 0 0 chr9 37426267 37426290 -86649882 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 9 870 554 319 64 0 chr9 37426292 37426449 -86649723 - ID_B1 SINE B4 -55 169 3 9 870 416 139 0 14 chr9 37426572 37426645 -86649527 - B1_Mur3 SINE Alu -2 147 76 9 870 424 282 24 16 chr9 37426647 37426773 -86649399 - L1_Mur3 LINE L1 -332 5548 5422 9 870 1772 155 49 44 chr9 37428414 37428779 -86647393 - ORR1B2 LTR MaLR 0 367 1 9 870 769 121 272 24 chr9 37431047 37431216 -86644956 + B3 SINE B2 6 216 0 9 870 450 0 0 0 chr9 37431353 37431403 -86644769 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 870 264 77 0 0 chr9 37431920 37431959 -86644213 + (TC)n Simple_repeat Simple_repeat 1 39 0 9 870 342 0 0 0 chr9 37432698 37432736 -86643436 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 870 193 77 24 49 chr9 37434274 37434315 -86641857 + (CAA)n Simple_repeat Simple_repeat 1 40 0 9 870 213 149 21 0 chr9 37434686 37434733 -86641439 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 9 870 279 288 0 14 chr9 37434877 37434951 -86641221 + ID4_ SINE ID 2 74 -9 9 870 237 178 0 0 chr9 37435630 37435675 -86640497 + CT-rich Low_complexity Low_complexity 1 45 0 9 870 398 326 48 0 chr9 37435675 37435822 -86640350 + C-rich Low_complexity Low_complexity 1 154 0 9 870 1179 58 23 6 chr9 37435822 37435994 -86640178 + (TTTCC)n Simple_repeat Simple_repeat 3 177 0 9 870 614 110 0 20 chr9 37436477 37436579 -86639593 + (TCCCC)n Simple_repeat Simple_repeat 3 102 0 9 870 225 0 0 0 chr9 37436587 37436612 -86639560 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 9 870 300 227 14 43 chr9 37436614 37436683 -86639489 - B1_Mur4 SINE Alu -61 89 23 9 870 1041 256 77 22 chr9 37436725 37436929 -86639243 + B4A SINE B4 5 219 -73 9 870 243 0 0 0 chr9 37436929 37436956 -86639216 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 9 870 1041 256 77 22 chr9 37436956 37437023 -86639149 + B4A SINE B4 220 290 -2 9 870 1009 172 46 20 chr9 37437275 37437471 -86638701 - ORR1C2 LTR MaLR -10 374 174 9 870 252 122 0 0 chr9 37437473 37437514 -86638658 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 9 870 930 193 6 11 chr9 37437522 37437705 -86638467 - ORR1C2 LTR MaLR -192 182 1 9 870 230 314 39 77 chr9 37437814 37438021 -86638151 + L2a LINE L2 3219 3417 -9 9 870 204 135 0 0 chr9 37438650 37438687 -86637485 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 9 870 258 335 150 34 chr9 37439344 37439551 -86636621 - MIR SINE MIR -24 238 8 9 870 348 24 0 0 chr9 37439787 37439828 -86636344 + (GGA)n Simple_repeat Simple_repeat 3 43 0 9 870 302 361 43 24 chr9 37440017 37440224 -86635948 + L1M5 LINE L1 5507 5717 -407 9 870 282 302 78 107 chr9 37440675 37441068 -86635104 - MLT1H LTR MaLR -1 548 119 9 870 551 307 42 17 chr9 37441696 37441984 -86634188 - L1ME4a LINE L1 -234 5890 5596 9 870 189 0 0 0 chr9 37442749 37442770 -86633402 + (TA)n Simple_repeat Simple_repeat 1 21 0 9 870 291 201 28 14 chr9 37442804 37442945 -86633227 + (TG)n Simple_repeat Simple_repeat 2 144 0 9 870 336 282 128 75 chr9 37442955 37443220 -86632952 - B4A SINE B4 -11 281 3 9 870 351 0 0 0 chr9 37444336 37444375 -86631797 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 870 189 0 0 0 chr9 37444375 37444395 -86631777 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 870 350 313 20 10 chr9 37444403 37444503 -86631669 - B4 SINE B4 -3 289 189 9 870 541 330 40 92 chr9 37445215 37445619 -86630553 - Lx8 LINE L1 -16 7457 7075 9 870 438 228 78 8 chr9 37445857 37445985 -86630187 - Lx8 LINE L1 -446 7027 6891 9 870 269 358 67 18 chr9 37446250 37446415 -86629757 + L2 LINE L2 2898 3070 -349 9 870 701 266 272 47 chr9 37446416 37446865 -86629307 - MLT1E LTR MaLR -1 652 103 9 870 448 189 9 0 chr9 37447522 37447628 -86628544 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 9 870 262 314 19 28 chr9 37447814 37447922 -86628250 - ORR1E LTR MaLR -209 150 44 9 870 1555 191 182 6 chr9 37448760 37448803 -86627369 - MTC LTR MaLR 0 421 379 9 870 306 0 0 0 chr9 37448803 37448837 -86627335 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 9 870 1555 191 182 6 chr9 37448837 37449151 -86627021 - MTC LTR MaLR -43 378 3 9 870 249 293 27 0 chr9 37449465 37449540 -86626632 - MLT1E3 LTR MaLR -2 622 546 9 870 878 169 0 7 chr9 37449597 37449746 -86626426 - B1_Mus1 SINE Alu 0 148 1 9 870 200 188 0 0 chr9 37450173 37450205 -86625967 + polypyrimidine Low_complexity Low_complexity 2 33 0 9 870 330 171 92 0 chr9 37450851 37450927 -86625245 - MTC LTR MaLR -5 414 332 9 870 1627 189 65 9 chr9 37450985 37451310 -86624862 - MTC LTR MaLR -78 343 1 9 870 213 244 20 100 chr9 37451771 37451839 -86624333 + polypyrimidine Low_complexity Low_complexity 34 96 0 9 870 564 234 0 0 chr9 37451839 37451946 -86624226 - PB1D10 SINE Alu -8 109 3 9 870 213 244 20 100 chr9 37451946 37451977 -86624195 + polypyrimidine Low_complexity Low_complexity 5 33 0 9 870 450 0 0 0 chr9 37451977 37452027 -86624145 + (CTAA)n Simple_repeat Simple_repeat 2 51 0 9 870 787 249 90 0 chr9 37452037 37452226 -86623946 + B3 SINE B2 1 206 -10 9 870 24 0 0 0 chr9 37452699 37452723 -86623449 + AT_rich Low_complexity Low_complexity 1 24 0 9 870 23 33 0 0 chr9 37453562 37453592 -86622580 + AT_rich Low_complexity Low_complexity 1 30 0 9 870 255 246 95 14 chr9 37453613 37453687 -86622485 - ID4 SINE ID 0 83 4 9 870 345 204 266 9 chr9 37454996 37455105 -86621067 + B1_Mus2 SINE Alu 1 137 -10 9 870 551 228 146 0 chr9 37455956 37456079 -86620093 - B1_Mm SINE Alu -5 142 2 9 870 766 238 166 4 chr9 37456405 37456683 -86619489 + MLT1A0 LTR MaLR 40 362 -3 9 870 186 43 0 0 chr9 37457240 37457263 -86618909 + (A)n Simple_repeat Simple_repeat 1 23 0 9 870 525 237 17 8 chr9 37458124 37458243 -86617929 - B1_Mus2 SINE Alu -27 120 1 9 870 342 240 94 0 chr9 37460860 37460956 -86615216 - Tigger5 DNA MER2_type -2 2404 2300 9 870 349 316 63 130 chr9 37460945 37461135 -86615037 - MER47B DNA MER2_type -2155 251 59 9 870 1211 61 0 0 chr9 37461135 37461282 -86614890 - B1_Mus2 SINE Alu 0 147 1 9 870 340 316 63 130 chr9 37461282 37461360 -86614812 - Tigger5 DNA MER2_type -2348 58 1 9 870 223 272 228 0 chr9 37462853 37462967 -86613205 + RSINE1 SINE B4 12 151 -14 9 870 519 95 0 0 chr9 37463325 37463399 -86612773 + (GA)n Simple_repeat Simple_repeat 2 75 0 9 870 256 191 0 0 chr9 37463399 37463441 -86612731 + polypurine Low_complexity Low_complexity 2 43 0 9 870 21 0 0 0 chr9 37466119 37466140 -86610032 + AT_rich Low_complexity Low_complexity 1 21 0 9 870 430 290 0 0 chr9 37466247 37466347 -86609825 - ID_B1 SINE B4 -44 180 81 9 870 254 276 39 26 chr9 37466370 37466448 -86609724 + ID4 SINE ID 2 80 -3 9 870 267 103 0 0 chr9 37466455 37466494 -86609678 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 9 870 379 262 0 0 chr9 37466498 37466578 -86609594 + B3A SINE B2 47 126 -72 9 870 239 79 26 0 chr9 37466646 37466684 -86609488 + (CAA)n Simple_repeat Simple_repeat 2 40 0 9 870 532 223 18 0 chr9 37467824 37467936 -86608236 - RSINE1 SINE B4 -33 132 19 9 870 992 241 19 0 chr9 37469410 37469622 -86606550 - B3 SINE B2 0 216 1 9 870 1353 74 11 0 chr9 37470168 37470344 -86605828 - B2_Mm1t SINE B2 -14 179 2 9 870 234 0 0 0 chr9 37470356 37470382 -86605790 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 870 769 88 193 0 chr9 37470385 37470499 -86605673 - B1_Mus1 SINE Alu -12 136 1 9 870 192 333 28 83 chr9 37470545 37470797 -86605375 + L2a LINE L2 3116 3353 -73 9 870 906 141 0 0 chr9 37470811 37470967 -86605205 + (GA)n Simple_repeat Simple_repeat 1 156 0 9 870 294 95 0 0 chr9 37471277 37471319 -86604853 + (T)n Simple_repeat Simple_repeat 1 42 0 9 870 294 359 12 17 chr9 37472642 37472815 -86603357 - MIR SINE MIR -44 218 47 9 870 369 116 0 0 chr9 37472929 37472998 -86603174 + (TG)n Simple_repeat Simple_repeat 2 70 0 9 870 284 248 79 110 chr9 37473918 37474045 -86602127 + HAL1 LINE L1 766 888 -1619 9 870 447 258 17 102 chr9 37474742 37474919 -86601253 - RSINE1 SINE B4 0 165 4 9 870 481 239 27 18 chr9 37474920 37475031 -86601141 - PB1D10 SINE Alu -3 114 3 9 870 2865 150 63 27 chr9 37475726 37476247 -86599925 - Lx5 LINE L1 -11 7039 6500 9 870 422 354 131 54 chr9 37477885 37478334 -86597838 + MER115 DNA Tip100 2 545 -148 9 870 387 0 0 0 chr9 37478334 37478377 -86597795 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 870 379 316 69 30 chr9 37478377 37478513 -86597659 + MER115 DNA Tip100 546 689 -4 9 870 322 273 26 13 chr9 37478865 37478943 -86597229 - L1ME3A LINE L1 -179 7302 7224 9 870 302 250 0 0 chr9 37478943 37479007 -86597165 + ID4 SINE ID 2 65 -18 9 870 234 238 0 0 chr9 37479072 37479114 -86597058 + RSINE1 SINE B4 11 52 -113 9 870 589 319 142 59 chr9 37479146 37480341 -86595831 - L1ME3A LINE L1 -233 7248 5947 9 870 880 244 12 16 chr9 37480475 37480684 -86595488 - B3A SINE B2 -6 189 1 9 870 571 57 0 0 chr9 37480688 37480758 -86595414 - ID2 SINE ID -12 71 2 9 870 354 304 97 104 chr9 37480786 37481022 -86595150 - L1ME3A LINE L1 -1679 5775 5525 9 870 2153 143 42 20 chr9 37481022 37481379 -86594793 - ORR1B2 LTR MaLR -2 365 1 1 870 402 295 84 88 chr9 37481379 37482185 -86593987 - L1ME3A LINE L1 -1930 5524 4741 9 870 297 306 58 0 chr9 37482198 37482319 -86593853 - MLT1F LTR MaLR -5 543 416 1 870 228 246 14 84 chr9 37482378 37482449 -86593723 - MLT1F LTR MaLR -314 234 169 1 870 597 290 93 66 chr9 37482484 37482861 -86593311 - L1ME3A LINE L1 -5472 980 594 9 870 667 298 80 14 chr9 37482894 37483183 -86592989 - L1ME3A LINE L1 -5947 505 198 9 870 550 306 160 45 chr9 37483327 37483659 -86592513 - MLT1F1 LTR MaLR 0 569 200 1 870 1083 214 19 5 chr9 37483951 37484162 -86592010 + B3 SINE B2 3 216 0 1 870 201 241 0 0 chr9 37484395 37484449 -86591723 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 870 446 98 0 12 chr9 37484459 37484542 -86591630 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 870 246 209 21 0 chr9 37485491 37485549 -86590623 + L1M5 LINE L1 5029 5087 -1059 1 870 548 259 17 7 chr9 37485575 37485762 -86590410 + L1M5 LINE L1 5283 5482 -698 1 870 762 266 17 22 chr9 37485769 37485950 -86590222 + B3A SINE B2 1 180 -18 1 870 581 263 56 30 chr9 37485994 37486261 -86589911 - RLTR15 LTR ERVK -76 283 10 1 870 252 86 0 0 chr9 37486297 37486332 -86589840 + (A)n Simple_repeat Simple_repeat 1 35 0 1 870 225 0 0 0 chr9 37486424 37486449 -86589723 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 108 442 263 22 146 chr9 37486450 37486628 -86589544 - RSINE1 SINE B4 -7 158 3 1 871 528 216 52 78 chr9 37486639 37486830 -86589342 - L1MB8 LINE L1 -2 6176 5991 1 871 1091 253 117 43 chr9 37487021 37487235 -86588937 - L1MA6 LINE L1 -298 6002 5772 1 871 492 18 0 0 chr9 37487235 37487292 -86588880 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 1 871 1091 253 117 43 chr9 37487292 37487523 -86588649 - L1MA6 LINE L1 -529 5771 5525 1 871 427 100 33 0 chr9 37487523 37487583 -86588589 + L1M4 LINE L1 5522 5583 -591 1 871 342 212 0 12 chr9 37487585 37487666 -86588506 + L1MB7 LINE L1 5067 5146 -1000 1 871 776 274 130 8 chr9 37488013 37488260 -86587912 + B4A SINE B4 2 278 -14 1 871 414 0 0 0 chr9 37488275 37488321 -86587851 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 871 515 308 98 48 chr9 37489128 37489417 -86586755 + B4 SINE B4 2 278 -14 1 871 3189 56 5 2 chr9 37489509 37489904 -86586268 - MTA_Mm LTR MaLR 0 396 1 1 871 430 321 59 0 chr9 37489905 37490124 -86586048 - L1MA4 LINE L1 -43 6257 6027 1 871 9093 133 15 18 chr9 37490257 37492233 -86583939 - Lx4A LINE L1 -2 7056 5068 1 871 684 0 0 0 chr9 37492302 37492378 -86583794 + (TTC)n Simple_repeat Simple_repeat 3 78 0 1 871 269 70 47 0 chr9 37492378 37492421 -86583751 + (CCCCCT)n Simple_repeat Simple_repeat 6 50 0 1 871 536 240 39 8 chr9 37492424 37492554 -86583618 - B1_Mus1 SINE Alu -14 134 1 1 871 495 253 154 52 chr9 37492614 37492847 -86583325 - L1MA7 LINE L1 -253 6038 5782 1 871 529 253 31 38 chr9 37493124 37493284 -86582888 - RSINE1 SINE B4 -3 162 4 1 871 314 283 11 11 chr9 37493355 37493448 -86582724 + L1MB7 LINE L1 5695 5787 -391 1 871 247 193 35 0 chr9 37494712 37494769 -86581403 + L1MB7 LINE L1 5770 5828 -346 1 871 608 241 8 0 chr9 37494775 37494908 -86581264 + ID_B1 SINE B4 91 224 0 1 871 594 284 75 70 chr9 37494911 37495256 -86580916 + L1MB7 LINE L1 5821 6167 -17 1 871 710 237 51 0 chr9 37495595 37495772 -86580400 + B3 SINE B2 1 186 -30 1 871 477 0 0 0 chr9 37495772 37495825 -86580347 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 871 229 185 0 85 chr9 37496180 37496239 -86579933 - MT2B2 LTR ERVL -333 251 198 1 871 28 29 0 0 chr9 37496278 37496313 -86579859 + AT_rich Low_complexity Low_complexity 1 35 0 1 871 286 339 0 62 chr9 37496584 37496713 -86579459 - L1MA6 LINE L1 -355 5936 5816 1 871 1243 183 10 0 chr9 37496721 37496929 -86579243 - B3 SINE B2 -6 210 1 1 871 842 232 175 26 chr9 37497125 37497356 -86578816 - Lx8 LINE L1 -1019 6454 6181 1 871 573 55 0 0 chr9 37497356 37497429 -86578743 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 871 842 232 175 26 chr9 37497429 37497506 -86578666 - Lx8 LINE L1 -1293 6180 6100 1 871 1179 44 0 12 chr9 37499236 37499396 -86576776 - L1Md_F2 LINE L1 0 6582 6425 1 871 585 247 47 12 chr9 37499645 37499817 -86576355 - Tigger5 DNA MER2_type 0 2406 2229 1 871 401 292 21 28 chr9 37500081 37500222 -86575950 + MLT1A1 LTR MaLR 265 404 -4 1 871 1516 247 177 35 chr9 37500225 37500697 -86575475 - Tigger5 DNA MER2_type -170 2236 1687 2 871 387 0 0 0 chr9 37500697 37500740 -86575432 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 871 1516 247 177 35 chr9 37500740 37500842 -86575330 - Tigger5 DNA MER2_type -720 1686 1581 2 871 275 368 50 71 chr9 37500794 37500841 -86575331 - B4A SINE B4 -56 236 162 4 871 365 272 21 32 chr9 37500841 37500936 -86575236 - PB1D7 SINE Alu -26 94 1 5 871 275 368 50 71 chr9 37500936 37501034 -86575138 - B4A SINE B4 -56 161 2 4 871 708 311 74 4 chr9 37501039 37501310 -86574862 - Tigger5 DNA MER2_type -861 1545 1256 2 871 631 301 114 73 chr9 37501357 37501801 -86574371 + RLTR26 LTR ERVK 4 486 -156 6 871 303 93 0 0 chr9 37503835 37503878 -86572294 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 871 311 133 94 7 chr9 37503896 37503978 -86572194 + L1MC2 LINE L1 6255 6319 -25 8 871 186 43 0 0 chr9 37503995 37504018 -86572154 + (C)n Simple_repeat Simple_repeat 1 23 0 9 871 987 273 0 0 chr9 37504842 37505040 -86571132 + B3 SINE B2 6 203 -13 1 871 22 88 0 0 chr9 37505049 37505106 -86571066 + AT_rich Low_complexity Low_complexity 1 57 0 1 871 296 205 63 74 chr9 37505573 37505668 -86570504 + B1F1 SINE Alu 15 108 -41 1 871 554 305 8 8 chr9 37505778 37505907 -86570265 + RSINE1 SINE B4 3 131 -34 1 871 32 0 0 0 chr9 37506040 37506072 -86570100 + AT_rich Low_complexity Low_complexity 1 32 0 1 871 455 147 47 34 chr9 37506390 37506538 -86569634 + GA-rich Low_complexity Low_complexity 5 154 0 1 871 477 0 0 0 chr9 37507116 37507169 -86569003 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 871 241 200 150 0 chr9 37507169 37507229 -86568943 - Lx9 LINE L1 -181 7463 7395 1 871 446 186 36 108 chr9 37507250 37507389 -86568783 - RMER1C Other Other 0 1342 1214 1 871 478 175 9 9 chr9 37507395 37507510 -86568662 + GA-rich Low_complexity Low_complexity 2 116 0 1 871 843 162 20 0 chr9 37507516 37507664 -86568508 - RMER1C Other Other -151 1191 1041 1 871 14607 162 18 88 chr9 37507683 37509748 -86566424 - Lx4B LINE L1 0 7058 4972 2 871 2959 20 0 42 chr9 37509748 37510109 -86566063 - ORR1A0 LTR MaLR 0 346 1 2 871 15052 158 103 59 chr9 37510109 37510953 -86565219 - Lx4B LINE L1 -2 5881 4846 2 871 4410 81 7 2 chr9 37510953 37511549 -86564623 + L1_Mus4 LINE L1 6038 6636 0 2 871 15052 157 147 4 chr9 37511549 37514178 -86561994 - Lx4B LINE L1 -840 5043 2227 2 871 3012 147 1 11 chr9 37514238 37514771 -86561401 - L1VL2 LINE L1 -5704 654 126 2 871 726 96 0 0 chr9 37514774 37514878 -86561294 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 2 871 202 42 0 0 chr9 37514878 37514902 -86561270 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 871 1119 62 14 7 chr9 37514903 37515049 -86561123 - B1_Mus2 SINE Alu 0 147 1 2 871 3359 121 63 7 chr9 37515049 37515607 -86560565 - L1VL4 LINE L1 -5533 769 181 2 871 273 132 0 0 chr9 37515615 37515668 -86560504 - RMER1C Other Other -298 1044 992 2 871 315 237 65 73 chr9 37515691 37515814 -86560358 - HAL1b LINE L1 -1002 1007 886 2 871 344 233 22 28 chr9 37515843 37516024 -86560148 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 3 871 245 199 57 6 chr9 37516062 37516219 -86559953 + (TATG)n Simple_repeat Simple_repeat 2 166 0 3 871 3356 120 28 6 chr9 37516556 37517085 -86559087 - Lx2 LINE L1 0 6997 6457 3 871 225 154 0 0 chr9 37517448 37517487 -86558685 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 871 272 35 88 0 chr9 37518137 37518194 -86557978 + (TTTTG)n Simple_repeat Simple_repeat 3 64 0 3 871 477 122 0 0 chr9 37518563 37518637 -86557535 + (GAA)n Simple_repeat Simple_repeat 2 75 0 3 871 554 268 40 25 chr9 37520309 37520508 -86555664 - B3 SINE B2 -14 202 1 3 871 395 275 21 32 chr9 37520727 37520821 -86555351 + PB1D7 SINE Alu 27 119 -1 3 871 21 36 0 0 chr9 37521650 37521678 -86554494 + AT_rich Low_complexity Low_complexity 1 28 0 3 871 27 29 0 0 chr9 37521810 37521844 -86554328 + AT_rich Low_complexity Low_complexity 1 34 0 3 871 1249 151 76 0 chr9 37521878 37522103 -86554069 + RLTR40 LTR ERVK 6 247 -570 4 871 273 148 48 16 chr9 37522378 37522440 -86553732 + RLTR40 LTR ERVK 235 298 -519 4 871 2652 160 25 40 chr9 37522489 37523011 -86553161 + RLTR40 LTR ERVK 297 810 -7 4 871 225 94 0 0 chr9 37524064 37524096 -86552076 + (CACCAT)n Simple_repeat Simple_repeat 5 36 0 4 871 1228 48 0 0 chr9 37524389 37524535 -86551637 + B1_Mm SINE Alu 2 147 0 4 871 276 100 0 0 chr9 37524535 37524575 -86551597 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 4 871 428 310 194 0 chr9 37524658 37524787 -86551385 + B3A SINE B2 1 154 -44 4 871 477 0 0 0 chr9 37524788 37524841 -86551331 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 871 371 296 12 18 chr9 37524921 37525086 -86551086 - L1MD1 LINE L1 -1 6241 6078 4 871 22 70 0 0 chr9 37525208 37525251 -86550921 + AT_rich Low_complexity Low_complexity 1 43 0 4 871 705 231 120 95 chr9 37525261 37525620 -86550552 - RLTR9A LTR ERVK 0 368 1 4 871 316 152 29 57 chr9 37526183 37526253 -86549919 - ETnERV2-int LTR ERVK -1210 6196 6129 4 871 4450 176 68 28 chr9 37526262 37527327 -86548845 - ETnERV2-int LTR ERVK -5235 2171 311 4 871 253 259 79 91 chr9 37527415 37527733 -86548439 - ETnERV2-int LTR ERVK -2997 317 4 4 871 828 233 130 88 chr9 37527735 37528088 -86548084 - RLTR9A LTR ERVK 0 368 1 4 871 248 202 139 20 chr9 37528103 37528204 -86547968 + L1_Rod LINE L1 5735 5847 0 5 871 1872 146 151 57 chr9 37528484 37528869 -86547303 + MTC LTR MaLR 1 421 0 5 871 366 293 112 80 chr9 37528928 37529277 -86546895 - L1MC5 LINE L1 -927 7034 6675 5 871 707 306 61 30 chr9 37529277 37529607 -86546565 - RLTR23 LTR ERV1 0 430 91 5 871 234 180 0 0 chr9 37529617 37529667 -86546505 + T-rich Low_complexity Low_complexity 1 50 0 5 871 468 114 138 12 chr9 37529676 37529756 -86546416 - RLTR23 LTR ERV1 -330 100 11 5 871 333 290 36 12 chr9 37529862 37530008 -86546164 + CT-rich Low_complexity Low_complexity 1 149 0 5 871 948 286 78 16 chr9 37530650 37530950 -86545222 - MTE2b LTR MaLR -57 362 3 5 871 2686 295 126 29 chr9 37530952 37531911 -86544261 - MTE2b-int LTR MaLR 0 1580 529 5 871 898 308 138 14 chr9 37531905 37532261 -86543911 - MTE2b-int LTR MaLR -1179 401 2 5 871 1412 244 83 3 chr9 37532262 37532610 -86543562 - MTE2b LTR MaLR -1 369 1 5 871 236 226 170 7 chr9 37532625 37532772 -86543400 + L1MC LINE L1 2771 2941 -3205 5 871 450 157 26 113 chr9 37532810 37532824 -86543348 + MT2B LTR ERVL 154 157 -444 5 871 748 153 4 8 chr9 37532824 37532957 -86543215 + B1_Mus2 SINE Alu 2 137 -13 5 871 210 71 0 0 chr9 37532958 37532986 -86543186 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 6 871 383 198 15 73 chr9 37532987 37533123 -86543049 + L1MC LINE L1 3004 3131 -3015 5 871 2446 242 36 65 chr9 37533333 37534323 -86541849 + L1_Rod LINE L1 4109 5070 -777 6 871 1376 256 16 21 chr9 37534338 37534761 -86541411 + L1_Rod LINE L1 5263 5683 -164 6 871 482 315 87 25 chr9 37534829 37535070 -86541102 + Lx9 LINE L1 7093 7348 -296 6 871 378 0 0 0 chr9 37535886 37535928 -86540244 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 6 871 989 126 0 0 chr9 37535928 37536063 -86540109 - B1_Mus1 SINE Alu -12 136 2 6 871 216 0 0 0 chr9 37536887 37536911 -86539261 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 871 324 283 61 71 chr9 37537078 37537177 -86538995 + LTR33B LTR ERVL 19 163 -340 6 871 526 267 78 0 chr9 37537177 37537383 -86538789 + Lx8 LINE L1 7252 7473 0 6 871 293 274 48 10 chr9 37539038 37539141 -86537031 - PB1D10 SINE Alu 0 117 11 6 871 383 350 43 28 chr9 37539286 37539427 -86536745 - RSINE1 SINE B4 -8 157 15 6 871 1168 57 0 0 chr9 37539629 37539769 -86536403 - B1_Mm SINE Alu -7 140 1 7 871 1016 90 103 40 chr9 37540049 37540223 -86535949 - B2_Mm2 SINE B2 -6 189 5 7 871 486 307 0 50 chr9 37540237 37540357 -86535815 - PB1D7 SINE Alu -6 114 1 7 871 248 207 54 109 chr9 37540289 37540381 -86535791 + YREP_Mm Unknown Unknown 255 341 -1471 7 871 285 123 15 30 chr9 37541012 37541079 -86535093 + (CCA)n Simple_repeat Simple_repeat 2 67 0 7 871 428 309 84 68 chr9 37541748 37541939 -86534233 - B3A SINE B2 0 198 5 7 871 430 285 32 16 chr9 37541996 37542185 -86533987 - L1MC5 LINE L1 -1128 6833 6642 7 871 4733 92 0 6 chr9 37542442 37542453 -86533719 - L1_Mm LINE L1 -93 5790 5782 7 871 6426 50 0 8 chr9 37542453 37543242 -86532930 - L1_Mus1 LINE L1 -2 6565 5783 7 871 1790 23 0 5 chr9 37543237 37543454 -86532718 - L1Md_F3 LINE L1 0 6584 6369 7 871 4733 92 0 6 chr9 37543454 37544116 -86532056 - L1_Mm LINE L1 -102 5781 5121 7 871 1375 246 47 38 chr9 37544173 37544596 -86531576 - RLTR40 LTR ERVK -10 807 381 8 871 404 226 117 49 chr9 37544611 37544770 -86531402 + RLTR20C LTR ERVK 322 490 -88 8 871 1240 228 119 60 chr9 37544761 37544852 -86531320 + RLTR20C LTR ERVK 5 82 -478 8 871 3506 20 2 0 chr9 37544852 37545247 -86530925 - MTA_Mm LTR MaLR 0 396 1 8 871 1616 218 106 10 chr9 37545247 37545588 -86530584 + RLTR20C LTR ERVK 78 464 -96 8 871 423 0 0 0 chr9 37545588 37545635 -86530537 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 871 1616 218 106 10 chr9 37545635 37545714 -86530458 + RLTR20C LTR ERVK 442 533 -1 8 871 205 102 61 0 chr9 37546003 37546052 -86530120 + CT-rich Low_complexity Low_complexity 3 54 0 8 871 798 252 7 112 chr9 37546406 37546683 -86529489 - Lx9 LINE L1 -547 7097 6850 8 871 26 0 0 0 chr9 37546797 37546823 -86529349 + AT_rich Low_complexity Low_complexity 1 26 0 8 871 237 202 76 0 chr9 37546838 37546917 -86529255 + Lx9 LINE L1 7533 7617 -27 8 871 393 22 0 0 chr9 37547201 37547247 -86528925 + (CCAA)n Simple_repeat Simple_repeat 1 46 0 8 871 260 289 0 62 chr9 37547399 37547466 -86528706 + RMER15 LTR ERVL 336 398 -177 9 871 1141 56 11 22 chr9 37547466 37547648 -86528524 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 9 871 260 289 0 62 chr9 37547648 37547661 -86528511 + RMER15 LTR ERVL 399 411 -164 9 871 468 123 24 16 chr9 37547662 37547786 -86528386 + (TCTA)n Simple_repeat Simple_repeat 1 124 0 9 871 228 91 53 35 chr9 37547792 37547849 -86528323 + (TCTG)n Simple_repeat Simple_repeat 3 60 0 9 871 861 284 16 0 chr9 37547851 37548041 -86528131 - ID_B1 SINE B4 -9 215 23 9 871 2744 38 0 145 chr9 37548595 37549022 -86527150 - RLTR10B2 LTR ERVK 0 365 1 9 871 336 239 170 21 chr9 37549389 37549530 -86526642 - MIR SINE MIR -46 216 55 9 871 388 334 107 40 chr9 37549767 37549991 -86526181 - Lx7 LINE L1 -1316 6157 5933 9 871 747 32 0 0 chr9 37549991 37550085 -86526087 + (CA)n Simple_repeat Simple_repeat 2 95 0 9 871 470 312 107 26 chr9 37550085 37550370 -86525802 - Lx7 LINE L1 -1541 5932 5614 9 871 1079 173 62 0 chr9 37550370 37550549 -86525623 - ORR1C1 LTR MaLR 0 378 189 9 871 252 178 0 0 chr9 37550547 37550592 -86525580 - ORR1C1 LTR MaLR -321 57 13 9 871 477 227 115 63 chr9 37550592 37550830 -86525342 - Lx7 LINE L1 -686 5617 5334 9 871 331 353 32 6 chr9 37550830 37550987 -86525185 + RSINE1 SINE B4 5 165 0 1 871 418 270 133 36 chr9 37550987 37551098 -86525074 - Lx7 LINE L1 -936 5367 5256 9 871 182 274 59 0 chr9 37552208 37552259 -86523913 - L3 LINE CR1 -3360 1129 1076 1 871 603 102 115 14 chr9 37552306 37552445 -86523727 - Lx9 LINE L1 -1 7643 7491 1 871 480 241 15 0 chr9 37553216 37553353 -86522819 + (GCCTAA)n Simple_repeat Simple_repeat 2 140 0 1 871 556 97 21 0 chr9 37553537 37553630 -86522542 + (TC)n Simple_repeat Simple_repeat 2 96 0 1 871 363 230 253 0 chr9 37555133 37555311 -86520861 - Lx9 LINE L1 -1 7643 7421 1 871 491 319 11 71 chr9 37555436 37555618 -86520554 + B3A SINE B2 18 188 -10 1 871 1201 99 11 0 chr9 37555805 37555986 -86520186 - Lx4A LINE L1 -195 6863 6681 1 871 1936 145 21 10 chr9 37555989 37556372 -86519800 - L1_Mur2 LINE L1 -893 4984 4598 1 871 470 232 10 10 chr9 37556381 37556477 -86519695 - RLTR20B2 LTR ERVK -1 559 464 1 871 513 0 0 0 chr9 37556478 37556535 -86519637 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 871 483 18 0 0 chr9 37556535 37556590 -86519582 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 871 1398 196 26 19 chr9 37556605 37556876 -86519296 - RLTR20B2 LTR ERVK -202 358 86 1 871 1933 148 5 71 chr9 37556876 37557311 -86518861 + RMER17C LTR ERVK 1 406 -4 1 871 311 298 92 7 chr9 37557311 37557327 -86518845 - RLTR16 LTR ERVK -478 27 12 1 871 1598 211 125 61 chr9 37557330 37557936 -86518236 + RMER17C-int LTR ERVK 17 661 -2577 1 871 273 207 0 0 chr9 37558390 37558472 -86517700 + CT-rich Low_complexity Low_complexity 2 83 0 1 871 1674 157 268 19 chr9 37558913 37559585 -86516587 + RMER17C-int LTR ERVK 1485 2323 -915 1 871 715 115 7 73 chr9 37559595 37559745 -86516427 - Lx LINE L1 -2 6652 6513 1 871 3938 187 72 55 chr9 37559745 37560674 -86515498 + RLTR13C1 LTR ERVK 13 957 -26 1 871 15749 178 98 17 chr9 37560710 37565323 -86510849 - Lx LINE L1 -366 6288 1273 1 871 183 100 0 0 chr9 37565323 37565353 -86510819 + (TCTTG)n Simple_repeat Simple_repeat 4 33 0 1 871 564 15 0 0 chr9 37565353 37565418 -86510754 + (TTTC)n Simple_repeat Simple_repeat 1 65 0 1 871 234 0 0 0 chr9 37565419 37565445 -86510727 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 871 1081 45 15 0 chr9 37565447 37565580 -86510592 - B1_Mus1 SINE Alu -12 136 2 1 871 15749 112 0 84 chr9 37565580 37565851 -86510321 - Lx LINE L1 -5814 1272 1020 1 871 1603 192 29 113 chr9 37565851 37566232 -86509940 - RLTR41 LTR ERV1 0 446 98 1 871 2946 219 2 4 chr9 37566252 37567095 -86509077 - Lx LINE L1 -6063 1023 375 1 871 543 151 0 0 chr9 37567187 37567280 -86508892 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 871 26 30 0 0 chr9 37567779 37567812 -86508360 + AT_rich Low_complexity Low_complexity 1 33 0 1 871 1073 163 19 130 chr9 37568135 37568611 -86507561 + RMER17C LTR ERVK 3 402 -8 1 871 3270 48 8 0 chr9 37568724 37569121 -86507051 + MTB LTR MaLR 1 400 0 1 871 404 263 115 97 chr9 37569498 37569932 -86506240 + RMER10A LTR ERVL 1 442 0 1 871 5913 145 31 40 chr9 37570065 37571870 -86504302 + L1VL4 LINE L1 474 2189 -1628 1 871 3841 50 0 8 chr9 37571870 37572373 -86503799 - L1Md_F3 LINE L1 -316 5567 5069 1 871 692 88 0 0 chr9 37572376 37572467 -86503705 + L1Md_F3 LINE L1 5587 5677 -907 1 871 456 19 0 0 chr9 37572467 37572520 -86503652 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 1 871 6760 113 10 6 chr9 37572520 37573976 -86502196 + L1_Mus3 LINE L1 5176 6634 -4 1 871 253 308 24 0 chr9 37574280 37574363 -86501809 - ID2 SINE ID -61 91 7 1 871 1849 133 84 49 chr9 37575279 37575626 -86500546 - ORR1B2 LTR MaLR -8 359 1 1 871 797 159 38 0 chr9 37575752 37575884 -86500288 + RLTR25A LTR ERVK 1 137 -891 1 871 3112 174 92 93 chr9 37575884 37576691 -86499481 + RLTR25A LTR ERVK 298 1103 0 1 871 376 345 53 37 chr9 37576730 37576917 -86499255 - L1M5 LINE L1 -506 5658 5469 1 871 396 299 219 39 chr9 37577572 37578339 -86497833 - L1MEc LINE L1 -4448 1952 1085 1 871 2480 191 114 15 chr9 37578377 37578471 -86497701 - RLTR20B3 LTR ERVK 0 577 485 1 871 387 0 0 0 chr9 37578471 37578514 -86497658 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 871 2480 191 114 15 chr9 37578514 37578944 -86497228 - RLTR20B3 LTR ERVK -93 484 1 1 871 26 0 0 0 chr9 37581857 37581883 -86494289 + AT_rich Low_complexity Low_complexity 1 26 0 1 871 375 219 42 0 chr9 37581883 37582002 -86494170 - Lx9 LINE L1 -1 7643 7520 1 871 22 56 0 0 chr9 37582120 37582156 -86494016 + AT_rich Low_complexity Low_complexity 1 36 0 1 871 281 357 0 62 chr9 37582184 37582378 -86493794 + B3A SINE B2 1 182 -16 1 871 609 202 0 0 chr9 37582401 37582690 -86493482 + (CA)n Simple_repeat Simple_repeat 1 289 0 1 871 579 205 0 0 chr9 37582717 37582989 -86493183 + (CA)n Simple_repeat Simple_repeat 1 272 0 1 871 28354 105 11 5 chr9 37583266 37588540 -86487632 - L1_Mus3 LINE L1 -6 6632 1323 1 871 4571 98 125 54 chr9 37588542 37589372 -86486800 - RMER17D LTR ERVK 0 889 1 1 871 6765 118 45 80 chr9 37589373 37590737 -86485435 - RMER17A-int LTR ERVK -4 1724 409 1 871 263 213 26 13 chr9 37590761 37590837 -86485335 - RMER17A-int LTR ERVK -1433 295 219 1 871 3097 49 201 2 chr9 37590887 37591314 -86484858 - RLTR1B LTR ERV1 0 512 1 1 871 225 154 0 0 chr9 37591455 37591494 -86484678 + GA-rich Low_complexity Low_complexity 1 39 0 1 871 683 208 0 14 chr9 37591495 37591641 -86484531 - RMER17A-int LTR ERVK -1582 146 3 1 871 1618 146 29 0 chr9 37591643 37591924 -86484248 - RMER17D LTR ERVK 0 889 601 1 871 3901 78 56 0 chr9 37591926 37592464 -86483708 - L1Md_F2 LINE L1 -12 6570 6003 1 871 2555 70 3 9 chr9 37592464 37592873 -86483299 + L1Md_A LINE L1 5688 6085 -912 1 871 218 160 20 0 chr9 37593035 37593085 -86483087 + GA-rich Low_complexity Low_complexity 2 52 0 1 871 4260 6 2 0 chr9 37593434 37593951 -86482221 + L1Md_A LINE L1 6107 6582 0 1 871 496 321 132 35 chr9 37594528 37594928 -86481244 + L1ME2 LINE L1 5722 6160 -4 1 871 431 124 0 37 chr9 37594972 37595081 -86481091 + A-rich Low_complexity Low_complexity 1 105 0 1 871 483 282 31 53 chr9 37595263 37595488 -86480684 + L1_Mus3 LINE L1 343 562 -7166 1 871 15362 205 13 98 chr9 37595481 37597202 -86478970 + L1_Mus3 LINE L1 859 2231 -3649 1 871 297 0 0 0 chr9 37597202 37597235 -86478937 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 871 19054 142 11 14 chr9 37597235 37601848 -86474324 + L1_Mus3 LINE L1 2232 6638 0 1 871 3629 212 65 34 chr9 37601853 37602779 -86473393 + Lx6 LINE L1 5779 6733 -727 1 871 189 107 0 0 chr9 37603050 37603078 -86473094 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1 871 302 315 0 11 chr9 37603267 37603360 -86472812 + MTE2b LTR MaLR 1 92 -287 1 871 972 238 194 0 chr9 37603360 37603633 -86472539 + MTE2b LTR MaLR 52 377 -2 1 871 6694 89 9 0 chr9 37603834 37604827 -86471345 - Lx3A LINE L1 -1078 4808 3807 1 871 8439 89 17 22 chr9 37604826 37606731 -86469441 + Lx3A LINE L1 4964 6861 -120 1 871 252 0 0 0 chr9 37606731 37606759 -86469413 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 871 8439 108 21 37 chr9 37606759 37606879 -86469293 + Lx3A LINE L1 6862 6974 -7 1 871 948 259 33 41 chr9 37606946 37607309 -86468863 + L1MA6 LINE L1 5877 6236 -64 1 871 1286 304 93 24 chr9 37607339 37607895 -86468277 - Lx6 LINE L1 -21 7439 6478 1 871 2066 223 75 32 chr9 37607895 37608535 -86467637 - Lx6 LINE L1 -707 6343 5651 1 871 338 207 60 12 chr9 37608535 37608618 -86467554 - MTC LTR MaLR -334 87 1 1 871 1749 176 66 89 chr9 37608619 37609012 -86467160 - ORR1C2 LTR MaLR 0 384 1 1 871 902 247 92 50 chr9 37609024 37609403 -86466769 - Lx6 LINE L1 -1070 4810 4416 1 871 1041 235 48 88 chr9 37609406 37609463 -86466709 - MT2B LTR ERVL 0 601 548 1 871 207 0 0 0 chr9 37609463 37609486 -86466686 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 871 546 29 0 0 chr9 37609486 37609553 -86466619 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 871 1041 249 79 72 chr9 37609553 37609985 -86466187 - MT2B LTR ERVL -54 547 2 1 871 303 96 0 0 chr9 37613865 37613917 -86462255 + (T)n Simple_repeat Simple_repeat 1 52 0 1 871 234 279 85 19 chr9 37614621 37614727 -86461445 + L1M5 LINE L1 5395 5507 -672 1 871 237 235 48 36 chr9 37614758 37614842 -86461330 + L1MC LINE L1 5679 5763 -570 1 871 250 267 0 0 chr9 37614966 37615026 -86461146 + RMER15 LTR ERVL 1 60 -515 1 871 1996 258 31 36 chr9 37615048 37615599 -86460573 + RMER15 LTR ERVL 27 574 -1 1 871 4010 153 52 18 chr9 37615781 37616494 -86459678 + RMER19A LTR ERVK 1 737 0 1 871 654 248 22 0 chr9 37616728 37616865 -86459307 - Lx8 LINE L1 -178 7295 7156 1 871 1766 222 77 38 chr9 37616870 37617403 -86458769 - RLTR20B3 LTR ERVK 0 577 24 1 108 1628 270 109 35 chr9 37617410 37618062 -86458110 - Lx8 LINE L1 -317 7156 6457 1 872 506 340 7 26 chr9 37618081 37618235 -86457937 - ID_B1 SINE B4 -2 222 72 1 872 278 365 30 20 chr9 37618311 37618495 -86457677 - MIR SINE MIR -62 206 13 1 872 200 114 29 0 chr9 37619618 37619653 -86456519 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 1 872 497 254 42 0 chr9 37619701 37619819 -86456353 + MTE2b LTR MaLR 1 123 -256 1 872 3297 174 172 72 chr9 37619858 37620678 -86455494 - RMER19B LTR ERVK 0 902 1 1 872 1096 224 83 49 chr9 37620776 37620916 -86455256 - Lx7 LINE L1 -6 7690 7546 1 872 291 54 0 0 chr9 37620916 37620953 -86455219 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 1 872 1096 224 83 49 chr9 37620953 37621136 -86455036 - Lx7 LINE L1 -151 7545 7356 1 872 28 0 0 0 chr9 37621137 37621165 -86455007 + AT_rich Low_complexity Low_complexity 1 28 0 1 872 4232 219 13 22 chr9 37621171 37622099 -86454073 - Lx7 LINE L1 -328 7368 6449 1 872 21 36 0 0 chr9 37622971 37622999 -86453173 + AT_rich Low_complexity Low_complexity 1 28 0 1 872 1247 34 0 0 chr9 37623026 37623173 -86452999 + B1_Mus2 SINE Alu 1 147 0 1 872 261 139 0 0 chr9 37623173 37623216 -86452956 + (A)n Simple_repeat Simple_repeat 1 43 0 1 872 2417 64 0 0 chr9 37623340 37623651 -86452521 + L1Md_T LINE L1 6272 6582 0 1 872 4587 216 58 16 chr9 37624554 37625552 -86450620 - Lx5 LINE L1 0 7050 6011 1 872 1270 130 239 1 chr9 37625550 37625802 -86450370 - Lx4B LINE L1 -1084 5974 5661 1 872 722 290 43 32 chr9 37625804 37626057 -86450115 - RLTR16 LTR ERVK -2 503 248 1 872 686 184 121 29 chr9 37626072 37626246 -86449926 - RLTR16 LTR ERVK -310 195 6 1 872 4148 158 9 17 chr9 37626247 37627003 -86449169 - Lx4B LINE L1 -698 5179 4430 1 872 2489 162 70 68 chr9 37627082 37627178 -86448994 - RLTR20B3 LTR ERVK 0 577 483 1 872 339 25 0 0 chr9 37627178 37627218 -86448954 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 872 2489 162 70 68 chr9 37627218 37627677 -86448495 - RLTR20B3 LTR ERVK -95 482 23 1 872 4634 209 60 22 chr9 37628361 37629094 -86447078 - RMER1B Other Other -19 1047 289 1 872 1554 83 35 77 chr9 37629094 37629354 -86446818 + L1_Mus2 LINE L1 6318 6566 0 1 872 4634 209 60 22 chr9 37629354 37629587 -86446585 - RMER1B Other Other -778 288 44 1 872 794 241 5 47 chr9 37630174 37630366 -86445806 - U2 snRNA snRNA -1 187 4 1 872 209 340 0 21 chr9 37630430 37630526 -86445646 + CT-rich Low_complexity Low_complexity 3 96 0 1 872 393 318 56 27 chr9 37630527 37630559 -86445613 - ID_B1 SINE B4 -46 246 83 1 872 515 314 0 0 chr9 37630559 37630683 -86445489 - B1F2 SINE Alu -25 124 1 1 872 207 0 0 0 chr9 37630984 37631007 -86445165 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 872 870 261 6 6 chr9 37631008 37631185 -86444987 - B3A SINE B2 -20 178 2 1 872 3271 288 70 38 chr9 37631910 37633040 -86443132 + Lx8 LINE L1 6306 7471 -2 1 872 225 83 0 0 chr9 37633122 37633158 -86443014 + (T)n Simple_repeat Simple_repeat 1 36 0 1 872 832 100 122 8 chr9 37633158 37633289 -86442883 - B1_Mus1 SINE Alu 0 148 3 1 872 209 146 21 0 chr9 37633488 37633536 -86442636 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 872 1952 313 65 21 chr9 37633584 37633775 -86442397 - Lx8 LINE L1 -31 7442 7230 2 872 3439 30 0 0 chr9 37633775 37634169 -86442003 - MTA_Mm LTR MaLR 0 396 3 2 872 1952 313 65 21 chr9 37634169 37634813 -86441359 - Lx8 LINE L1 -244 7229 6572 2 872 510 61 0 0 chr9 37634898 37634964 -86441208 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 2 872 227 331 153 4 chr9 37635003 37635258 -86440914 - L1MC LINE L1 -2330 5552 5260 2 872 29 28 0 0 chr9 37635355 37635391 -86440781 + AT_rich Low_complexity Low_complexity 1 36 0 2 872 447 335 57 1 chr9 37635482 37635776 -86440396 - L1M5 LINE L1 -1136 5010 4700 2 872 1957 131 79 0 chr9 37635979 37636284 -86439888 - ORR1A4 LTR MaLR 0 329 1 2 872 539 181 138 0 chr9 37636578 37636716 -86439456 - L1MA6 LINE L1 0 6300 6144 2 872 449 292 68 46 chr9 37636936 37637155 -86439017 + ORR1E LTR MaLR 14 237 -122 2 872 356 55 0 18 chr9 37637176 37637232 -86438940 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2 872 234 91 0 0 chr9 37637260 37637293 -86438879 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 2 872 671 226 48 27 chr9 37637477 37637663 -86438509 - L1MD1 LINE L1 -48 6194 6005 2 872 640 232 12 12 chr9 37637665 37637831 -86438341 + L1MD1 LINE L1 5814 5979 -380 2 872 295 247 52 0 chr9 37639042 37639139 -86437033 - Tigger7 DNA MER2_type -99 2392 2291 2 872 374 257 8 96 chr9 37639220 37639345 -86436827 - MER2 DNA MER2_type -69 276 163 2 872 281 287 10 21 chr9 37639466 37639563 -86436609 - Tigger7 DNA MER2_type -2373 118 22 2 872 634 71 0 0 chr9 37639650 37639749 -86436423 - L1Md_F2 LINE L1 -7 6575 6477 2 872 2463 190 54 6 chr9 37639917 37640010 -86436162 - RLTR16 LTR ERVK 0 505 413 2 872 240 35 0 0 chr9 37640010 37640039 -86436133 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 872 2463 190 54 6 chr9 37640039 37640427 -86435745 - RLTR16 LTR ERVK -93 412 1 2 872 823 125 0 0 chr9 37641489 37641609 -86434563 + ORR1A2 LTR MaLR 1 120 -207 2 872 444 36 0 0 chr9 37641613 37641669 -86434503 - ORR1A2 LTR MaLR -4 323 268 2 872 978 178 23 11 chr9 37641674 37641850 -86434322 - MT2A LTR ERVL -355 178 1 2 872 425 325 11 81 chr9 37642251 37642425 -86433747 + RSINE1 SINE B4 4 165 0 2 872 621 246 99 0 chr9 37642479 37642621 -86433551 - B3A SINE B2 -41 157 2 2 872 204 40 0 0 chr9 37642913 37642938 -86433234 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 872 403 350 76 38 chr9 37644244 37644455 -86431717 + B4A SINE B4 66 284 -8 2 872 913 242 60 20 chr9 37645113 37645362 -86430810 - Lx8 LINE L1 -923 6550 6292 2 872 1584 161 50 19 chr9 37645888 37646322 -86429850 - RMER17C LTR ERVK -519 439 16 2 872 1003 216 45 55 chr9 37646925 37647214 -86428958 + RLTR11B LTR ERVK 1 286 -167 2 872 582 250 61 61 chr9 37647194 37647473 -86428699 + RLTR11B LTR ERVK 242 491 -37 2 872 312 239 128 62 chr9 37647624 37647989 -86428183 + L1MEc LINE L1 1960 2372 -4043 2 872 1112 288 94 11 chr9 37648068 37648714 -86427458 + L1MA6 LINE L1 5565 6290 -13 2 872 267 243 13 13 chr9 37648930 37649005 -86427167 + GA-rich Low_complexity Low_complexity 4 78 0 2 872 4079 58 38 36 chr9 37649084 37649636 -86426536 - L1_Mus2 LINE L1 0 6566 6014 2 872 5311 92 61 7 chr9 37649726 37651214 -86424958 + L1VL2 LINE L1 291 1826 -1789 2 872 332 303 0 0 chr9 37651358 37651447 -86424725 - PB1D10 SINE Alu -2 115 27 2 872 281 188 125 0 chr9 37651999 37652079 -86424093 + L1M2 LINE L1 2745 2834 -3309 2 872 831 290 99 26 chr9 37652064 37652872 -86423300 + L1MEc LINE L1 2761 3627 -2692 2 872 204 341 31 31 chr9 37653067 37653197 -86422975 - MIRb SINE MIR -75 193 64 2 872 2091 99 15 58 chr9 37653328 37653670 -86422502 - ORR1A2 LTR MaLR 0 327 1 2 872 1061 281 124 18 chr9 37654165 37654882 -86421290 + Lx8 LINE L1 6674 7466 -7 2 872 757 290 43 11 chr9 37654919 37655104 -86421068 + ID_B1 SINE B4 3 193 -31 2 872 450 0 0 0 chr9 37655104 37655154 -86421018 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 872 1286 55 0 6 chr9 37655154 37655335 -86420837 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 872 232 145 56 28 chr9 37655630 37655701 -86420471 + Lx9 LINE L1 7570 7642 -2 2 872 2960 186 5 26 chr9 37655914 37656494 -86419678 - L1_Mur3 LINE L1 -175 5705 5138 2 872 1107 154 0 79 chr9 37656495 37656735 -86419437 - L1_Mur3 LINE L1 -1253 4627 4407 2 872 9288 146 35 20 chr9 37656746 37658567 -86417605 - L1_Mur3 LINE L1 -2052 3828 1980 2 872 1942 171 103 0 chr9 37658586 37658936 -86417236 + ORR1B1 LTR MaLR 1 386 -8 2 872 566 245 56 28 chr9 37658940 37659083 -86417089 - L1_Mur3 LINE L1 -6916 812 666 2 872 1984 204 15 19 chr9 37659084 37659548 -86416624 - L1_Mur3 LINE L1 -7211 517 56 2 872 513 0 0 0 chr9 37659694 37659751 -86416421 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 872 243 0 0 0 chr9 37659751 37659777 -86416395 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 872 25 51 0 0 chr9 37659939 37659978 -86416194 + AT_rich Low_complexity Low_complexity 1 39 0 2 872 567 117 0 0 chr9 37660803 37660897 -86415275 + (TC)n Simple_repeat Simple_repeat 2 95 0 2 872 546 168 107 0 chr9 37661112 37661243 -86414929 + Lx3C LINE L1 6817 6961 -15 2 872 198 0 0 0 chr9 37661243 37661265 -86414907 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2 872 228 273 35 41 chr9 37661265 37661297 -86414875 + Lx2 LINE L1 6971 6997 0 2 872 219 139 0 0 chr9 37663933 37663969 -86412203 + (TTTTC)n Simple_repeat Simple_repeat 5 40 0 2 872 1091 43 0 0 chr9 37663969 37664107 -86412065 - B1_Mm SINE Alu 0 147 10 2 872 545 292 85 14 chr9 37664109 37664390 -86411782 - L1M2 LINE L1 -515 5776 5476 2 872 381 324 147 32 chr9 37664841 37665303 -86410869 - L1M5 LINE L1 -348 5814 5300 2 872 1005 310 18 3 chr9 37665336 37665621 -86410551 - B4 SINE B4 -2 290 2 2 872 239 343 73 75 chr9 37665677 37666103 -86410069 - L1M5 LINE L1 -896 5250 4826 2 872 310 272 129 50 chr9 37666209 37666550 -86409622 - L1M5 LINE L1 -1727 4419 4052 2 872 292 284 6 105 chr9 37668316 37668497 -86407675 + L1MCa LINE L1 813 975 -5070 2 872 350 315 74 5 chr9 37669240 37669457 -86406715 + L1MCa LINE L1 1201 1432 -5319 2 872 1397 212 85 33 chr9 37669604 37669969 -86406203 + RLTR20B2 LTR ERVK 177 560 0 2 872 422 198 0 29 chr9 37670202 37670306 -86405866 - L1M2 LINE L1 -636 5655 5555 2 872 829 69 24 24 chr9 37670335 37670499 -86405673 + (CA)n Simple_repeat Simple_repeat 2 165 0 2 872 1072 47 23 23 chr9 37670515 37670739 -86405433 + (CA)n Simple_repeat Simple_repeat 1 224 0 2 872 294 279 43 48 chr9 37671806 37671994 -86404178 + Lx9 LINE L1 7453 7639 -5 2 872 441 0 0 0 chr9 37672582 37672631 -86403541 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 872 470 248 44 0 chr9 37672632 37672745 -86403427 - PB1D9 SINE Alu -2 118 1 2 872 675 285 86 5 chr9 37672751 37672938 -86403234 - ID_B1 SINE B4 -3 221 20 2 872 22 0 0 0 chr9 37673356 37673378 -86402794 + AT_rich Low_complexity Low_complexity 1 22 0 2 872 2138 145 0 0 chr9 37673757 37674082 -86402090 - ORR1A4 LTR MaLR -4 325 1 2 872 5252 152 51 87 chr9 37674082 37675207 -86400965 - ORR1A4-int LTR MaLR 0 1963 880 2 872 1151 44 0 0 chr9 37675753 37675888 -86400284 + B1_Mus1 SINE Alu 1 135 -13 2 872 231 51 25 25 chr9 37675900 37675940 -86400232 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2 872 319 73 36 0 chr9 37675943 37675998 -86400174 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 2 872 536 77 13 0 chr9 37676156 37676234 -86399938 + (GAAAA)n Simple_repeat Simple_repeat 1 79 0 2 872 487 319 98 0 chr9 37676882 37677148 -86399024 - L1MC1 LINE L1 -29 6304 6013 2 872 441 0 0 0 chr9 37677172 37677221 -86398951 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 872 631 195 18 0 chr9 37679192 37679305 -86396867 - B3 SINE B2 -6 210 96 2 872 332 125 40 40 chr9 37679307 37679407 -86396765 + (CAGAGA)n Simple_repeat Simple_repeat 3 102 0 2 872 226 214 0 0 chr9 37679436 37679492 -86396680 + GA-rich Low_complexity Low_complexity 2 57 0 2 872 405 123 0 0 chr9 37679499 37679564 -86396608 + (GGA)n Simple_repeat Simple_repeat 2 66 0 2 872 264 380 49 0 chr9 37679739 37679902 -86396270 - MER5B DNA MER1_type 0 178 8 2 872 3410 141 27 4 chr9 37679976 37680502 -86395670 - Lx4A LINE L1 -1 7057 6520 2 872 27 0 0 0 chr9 37680990 37681017 -86395155 + AT_rich Low_complexity Low_complexity 1 27 0 2 872 22 70 0 0 chr9 37681058 37681101 -86395071 + AT_rich Low_complexity Low_complexity 1 43 0 2 872 180 0 0 0 chr9 37681180 37681200 -86394972 + (CAA)n Simple_repeat Simple_repeat 1 20 0 2 872 1525 288 62 8 chr9 37681248 37681762 -86394410 - Lx7 LINE L1 -363 7333 6792 2 872 2076 272 44 41 chr9 37681769 37682452 -86393720 + Lx7 LINE L1 6096 6780 -916 2 872 683 339 86 42 chr9 37682493 37682575 -86393597 - LTR53 LTR ERVL -36 483 392 2 872 369 0 0 0 chr9 37682575 37682616 -86393556 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 872 683 339 86 42 chr9 37682616 37682939 -86393233 - LTR53 LTR ERVL -128 391 61 2 872 378 0 0 0 chr9 37682951 37682993 -86393179 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 872 564 77 0 0 chr9 37682993 37683070 -86393102 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 872 675 0 0 0 chr9 37683218 37683293 -86392879 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 2 872 3975 101 35 56 chr9 37683298 37683960 -86392212 - Lx2 LINE L1 0 6997 6350 2 872 24 0 0 0 chr9 37684288 37684312 -86391860 + AT_rich Low_complexity Low_complexity 1 24 0 2 872 251 324 113 9 chr9 37684391 37684497 -86391675 - PB1D10 SINE Alu 0 117 1 2 872 21 0 0 0 chr9 37684519 37684540 -86391632 + AT_rich Low_complexity Low_complexity 1 21 0 2 872 1921 29 25 12 chr9 37685727 37685969 -86390203 - L1Md_F3 LINE L1 -14 6570 6326 2 872 2193 124 2 39 chr9 37686027 37686411 -86389761 + Lx LINE L1 5970 6344 -240 2 872 232 242 0 16 chr9 37686411 37686474 -86389698 + GA-rich Low_complexity Low_complexity 1 62 0 2 872 670 205 164 14 chr9 37686474 37686672 -86389500 - ORR1D1 LTR MaLR -158 226 1 2 872 675 241 72 39 chr9 37686715 37686922 -86389250 - B3 SINE B2 0 216 3 2 872 473 297 42 43 chr9 37686930 37687142 -86389030 - B3A SINE B2 0 216 1 2 872 860 283 101 27 chr9 37687180 37687438 -86388734 + B4 SINE B4 2 278 -14 2 872 212 308 0 0 chr9 37687450 37687502 -86388670 + (CATG)n Simple_repeat Simple_repeat 3 54 0 2 872 282 29 0 0 chr9 37687567 37687602 -86388570 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 2 872 34065 68 1 13 chr9 37689450 37695629 -86380543 - L1Md_F2 LINE L1 -2 6580 478 3 872 3293 292 125 12 chr9 37695640 37696582 -86379590 - Lx8 LINE L1 0 7473 6401 3 872 207 0 0 0 chr9 37696582 37696605 -86379567 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 872 3293 292 125 12 chr9 37696605 37696807 -86379365 - Lx8 LINE L1 -1073 6400 6194 3 872 423 0 0 0 chr9 37696807 37696854 -86379318 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 872 3293 292 125 12 chr9 37696854 37697217 -86378955 - Lx8 LINE L1 -1280 6193 5794 3 872 62 58 0 0 chr9 37697497 37697601 -86378571 + AT_rich Low_complexity Low_complexity 1 104 0 3 872 22 35 0 0 chr9 37697649 37697678 -86378494 + AT_rich Low_complexity Low_complexity 1 29 0 3 872 942 247 16 0 chr9 37699100 37699286 -86376886 - B3 SINE B2 -25 191 3 3 872 279 141 0 0 chr9 37699426 37699490 -86376682 + (A)n Simple_repeat Simple_repeat 1 64 0 3 872 2301 143 61 42 chr9 37700361 37700834 -86375338 - RLTR45 LTR ERVK 0 482 1 3 872 1105 101 0 0 chr9 37701260 37701408 -86374764 - B1_Mus1 SINE Alu 0 148 1 3 872 287 286 137 39 chr9 37701887 37702103 -86374069 - LTR16E2 LTR ERVL -2 566 301 3 872 242 269 62 85 chr9 37702914 37703044 -86373128 - MER5B DNA MER1_type -39 139 13 3 872 207 0 0 0 chr9 37703067 37703090 -86373082 + (T)n Simple_repeat Simple_repeat 1 23 0 3 872 417 39 0 0 chr9 37703878 37703929 -86372243 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 872 673 286 19 29 chr9 37703938 37704147 -86372025 - ID_B1 SINE B4 -17 207 1 3 872 592 291 7 14 chr9 37706596 37706739 -86369433 - ID_B1 SINE B4 -1 223 82 3 872 246 369 50 60 chr9 37707213 37707395 -86368777 + LTR33 LTR ERVL 323 502 -13 3 872 23 33 0 0 chr9 37707503 37707533 -86368639 + AT_rich Low_complexity Low_complexity 1 30 0 3 872 617 307 128 6 chr9 37707690 37708034 -86368138 + Lx9 LINE L1 7079 7464 -180 3 872 204 40 0 0 chr9 37708045 37708070 -86368102 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 872 29 0 0 0 chr9 37708196 37708225 -86367947 + AT_rich Low_complexity Low_complexity 1 29 0 3 872 956 297 42 14 chr9 37708726 37709013 -86367159 + MLT1A0 LTR MaLR 69 363 -2 3 872 1726 223 54 34 chr9 37709270 37709772 -86366400 + RMER19C LTR ERVK 140 668 -234 3 872 205 200 0 0 chr9 37709907 37709947 -86366225 + A-rich Low_complexity Low_complexity 1 40 0 3 872 307 304 96 0 chr9 37710049 37710164 -86366008 - L1M5 LINE L1 -308 5816 5691 3 872 368 324 9 19 chr9 37710214 37710321 -86365851 + B4A SINE B4 2 107 -185 3 872 683 217 138 21 chr9 37710363 37710551 -86365621 - B3 SINE B2 -6 210 1 3 872 616 335 95 11 chr9 37710732 37710995 -86365177 + B4A SINE B4 2 286 -6 3 872 206 244 12 0 chr9 37711048 37711130 -86365042 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 3 872 383 350 48 34 chr9 37712379 37712586 -86363586 - L1MC4 LINE L1 -972 7070 6861 3 872 378 341 126 40 chr9 37713110 37713333 -86362839 - MIRb SINE MIR -20 248 7 3 872 21 36 0 0 chr9 37713759 37713787 -86362385 + AT_rich Low_complexity Low_complexity 1 28 0 3 872 22 0 0 0 chr9 37714110 37714132 -86362040 + AT_rich Low_complexity Low_complexity 1 22 0 3 872 1883 271 75 37 chr9 37715473 37716224 -86359948 - Lx8 LINE L1 -1 7472 6694 3 872 22 56 0 0 chr9 37716283 37716319 -86359853 + AT_rich Low_complexity Low_complexity 1 36 0 3 872 511 330 21 5 chr9 37716773 37716996 -86359176 - Lx8 LINE L1 -224 7249 6998 3 872 462 36 0 0 chr9 37717045 37717101 -86359071 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 872 204 286 18 0 chr9 37717860 37717916 -86358256 + L2a LINE L2 3326 3382 -44 3 872 750 281 96 4 chr9 37718005 37718255 -86357917 - MER2 DNA MER2_type -71 274 2 3 872 1023 172 27 5 chr9 37718505 37718532 -86357640 - RLTR20B2 LTR ERVK -67 493 467 3 872 477 110 0 0 chr9 37718532 37718605 -86357567 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 872 1023 192 36 18 chr9 37718605 37718818 -86357354 - RLTR20B2 LTR ERVK -94 466 230 3 872 1388 184 27 15 chr9 37719020 37719279 -86356893 - RLTR20B2 LTR ERVK -298 262 1 3 872 3322 50 0 0 chr9 37720269 37720665 -86355507 - MTA_Mm LTR MaLR 0 396 1 3 872 9006 44 2 3 chr9 37720665 37721764 -86354408 - MTA_Mm-int LTR MaLR 0 1098 1 3 872 3359 45 0 0 chr9 37721764 37722160 -86354012 - MTA_Mm LTR MaLR 0 396 1 3 872 407 304 66 76 chr9 37722323 37722514 -86353658 - MLT1G1 LTR MaLR -345 234 63 3 872 705 53 0 0 chr9 37722514 37722608 -86353564 + (TG)n Simple_repeat Simple_repeat 1 94 0 3 872 407 303 68 80 chr9 37722608 37722663 -86353509 - MLT1G1 LTR MaLR -517 62 2 3 872 240 317 69 52 chr9 37723049 37723222 -86352950 - L1ME3A LINE L1 -62 6111 5936 3 872 333 0 0 0 chr9 37723286 37723323 -86352849 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 872 1052 122 0 13 chr9 37723340 37723490 -86352682 + B1_Mur4 SINE Alu 2 149 -1 3 872 485 195 0 54 chr9 37723509 37723601 -86352571 + B3 SINE B2 7 93 -123 3 872 536 313 106 68 chr9 37723677 37724016 -86352156 - ORR1E LTR MaLR -5 354 3 3 872 396 256 63 13 chr9 37724130 37724288 -86351884 - L1ME3A LINE L1 -378 5795 5630 3 872 228 35 0 0 chr9 37727879 37727908 -86348264 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 3 872 266 315 14 0 chr9 37727923 37727996 -86348176 - ID_B1 SINE B4 -26 198 125 3 872 3574 210 8 6 chr9 37729257 37729972 -86346200 + Lx9 LINE L1 6305 7021 -623 3 872 920 276 30 21 chr9 37729985 37730322 -86345850 - RLTR15 LTR ERVK -19 340 1 3 872 1812 178 186 40 chr9 37730322 37730730 -86345442 + Lx9 LINE L1 7016 7455 -189 3 872 312 27 0 0 chr9 37730730 37730767 -86345405 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 872 1812 178 186 40 chr9 37730767 37730886 -86345286 + Lx9 LINE L1 7456 7620 -24 3 872 288 143 0 0 chr9 37732371 37732427 -86343745 + (T)n Simple_repeat Simple_repeat 1 56 0 3 872 1775 75 12 8 chr9 37732597 37732965 -86343207 + L1_Mus3 LINE L1 6370 6638 0 3 872 747 161 247 58 chr9 37733150 37733384 -86342788 - RLTR25A LTR ERVK -9 1094 742 3 872 468 0 0 0 chr9 37733701 37733753 -86342419 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 872 996 211 99 20 chr9 37733783 37733947 -86342225 - RLTR25A LTR ERVK -241 787 622 3 872 414 0 0 0 chr9 37733947 37733993 -86342179 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 3 872 2681 151 122 7 chr9 37733993 37734500 -86341672 - RLTR25A LTR ERVK -407 621 1 3 872 233 196 18 0 chr9 37734585 37734641 -86341531 + GA-rich Low_complexity Low_complexity 2 58 0 3 872 28 0 0 0 chr9 37734726 37734754 -86341418 + AT_rich Low_complexity Low_complexity 1 28 0 3 872 1500 303 58 10 chr9 37734830 37735334 -86340838 - MER44B DNA MER2_type -1 549 22 3 872 3300 190 90 39 chr9 37735781 37736580 -86339592 - Lx5 LINE L1 -239 6811 5972 3 872 1085 148 134 5 chr9 37736575 37736792 -86339380 + Lx5 LINE L1 6800 7044 -6 3 872 285 89 0 0 chr9 37736966 37737011 -86339161 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 3 872 363 264 123 23 chr9 37737093 37737264 -86338908 + L1M5 LINE L1 3634 3821 -2325 3 872 479 235 78 35 chr9 37737326 37737467 -86338705 - B1F SINE Alu -2 147 1 3 872 355 219 96 77 chr9 37737533 37737637 -86338535 - B4 SINE B4 -12 280 175 3 872 1620 6 0 0 chr9 37737638 37737998 -86338174 + (CCTTG)n Simple_repeat Simple_repeat 1 360 0 3 872 1482 12 0 0 chr9 37737998 37738170 -86338002 + (TTCCC)n Simple_repeat Simple_repeat 1 172 0 3 872 272 345 24 0 chr9 37738177 37738261 -86337911 - B4 SINE B4 -205 87 2 3 872 1140 62 7 0 chr9 37739874 37740020 -86336152 - B1_Mm SINE Alu 0 147 1 3 872 183 271 0 0 chr9 37740395 37740454 -86335718 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 872 249 319 102 38 chr9 37741943 37742129 -86334043 - MER57D LTR ERV1 0 411 214 3 872 1022 125 92 5 chr9 37743386 37743571 -86332601 + Lx2A1 LINE L1 6807 7007 -1 3 872 226 245 126 11 chr9 37744056 37744151 -86332021 + ORR1E LTR MaLR 4 109 -250 3 872 291 289 70 49 chr9 37744194 37744336 -86331836 + MLT1A1 LTR MaLR 259 403 -5 3 872 233 119 24 0 chr9 37744766 37744808 -86331364 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 872 225 329 19 0 chr9 37745370 37745525 -86330647 - L1MDa LINE L1 -4625 2008 1851 3 872 362 356 74 6 chr9 37745527 37745702 -86330470 - L1MDa LINE L1 -5053 1580 1394 3 872 304 69 52 0 chr9 37745754 37745812 -86330360 + Lx6 LINE L1 7396 7456 -4 3 872 495 295 44 20 chr9 37745860 37746109 -86330063 - L1MDa LINE L1 -6358 275 21 3 872 563 320 19 13 chr9 37746132 37746287 -86329885 + RSINE1 SINE B4 7 162 -3 3 872 22 35 0 0 chr9 37746312 37746341 -86329831 + AT_rich Low_complexity Low_complexity 1 29 0 3 872 51 0 0 0 chr9 37746404 37746455 -86329717 + AT_rich Low_complexity Low_complexity 1 51 0 3 872 547 159 61 0 chr9 37746456 37746588 -86329584 - Lx9 LINE L1 -1 7643 7504 3 872 1910 207 54 37 chr9 37747765 37748281 -86327891 + RLTR11A2 LTR ERVK 3 527 0 3 872 1153 69 0 0 chr9 37748382 37748527 -86327645 + B1_Mm SINE Alu 3 147 0 3 872 194 143 20 0 chr9 37748529 37748578 -86327594 + A-rich Low_complexity Low_complexity 2 51 0 3 873 331 38 19 19 chr9 37749851 37749905 -86326267 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 3 873 2529 115 18 8 chr9 37750445 37750838 -86325334 - RLTR13D5 LTR ERVK 0 1023 627 3 873 67 0 0 0 chr9 37750838 37750905 -86325267 + AT_rich Low_complexity Low_complexity 1 67 0 3 873 3967 58 2 4 chr9 37750905 37751403 -86324769 - L1_Mus1 LINE L1 0 6567 6071 3 873 8022 92 1 2 chr9 37751403 37752804 -86323368 + L1_Mus1 LINE L1 4673 6071 -496 3 873 4327 67 49 39 chr9 37752804 37753438 -86322734 - RLTR13D5 LTR ERVK -383 640 1 3 873 423 220 145 57 chr9 37753894 37754053 -86322119 + RMER1B Other Other 886 1058 -8 3 873 2436 168 12 14 chr9 37754086 37754504 -86321668 - Lx3C LINE L1 0 6973 6557 3 873 3056 102 20 12 chr9 37754507 37754995 -86321177 - Lx3C LINE L1 -512 6464 5973 3 873 286 116 0 0 chr9 37754994 37755037 -86321135 + L1_Mur2 LINE L1 4154 4196 -1681 3 873 250 290 37 74 chr9 37755037 37755145 -86321027 + RLTR18B LTR ERVK 326 429 -83 3 873 377 39 0 19 chr9 37755147 37755199 -86320973 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 873 724 195 8 0 chr9 37755819 37755942 -86320230 - ETnERV2-int LTR ERVK -213 7193 7070 3 873 2441 70 0 0 chr9 37756099 37756415 -86319757 - L1Md_F2 LINE L1 -12 6570 6255 3 873 261 381 0 0 chr9 37756681 37756765 -86319407 - ID_B1 SINE B4 -60 164 81 3 873 318 374 7 52 chr9 37756777 37756932 -86319240 + Kanga1 DNA Tc2 94 241 -1504 3 873 1366 194 68 48 chr9 37757255 37757607 -86318565 - RLTR10D LTR ERVK 0 359 1 3 873 2034 171 19 8 chr9 37757607 37757978 -86318194 - IAP-d-int LTR ERVK 0 6542 6168 3 873 8207 261 16 28 chr9 37758198 37760952 -86315220 - IAP-d-int LTR ERVK -359 6183 3557 3 873 8155 263 22 8 chr9 37760952 37763270 -86312902 - IAP-d-int LTR ERVK -4189 2353 3 3 873 1402 236 31 11 chr9 37763272 37763624 -86312548 - RLTR10D LTR ERVK 0 359 1 3 873 4926 68 7 39 chr9 37763876 37764563 -86311609 - L1Md_F2 LINE L1 -3 6579 5915 4 873 30775 65 14 1 chr9 37764564 37768876 -86307296 + L1Md_F2 LINE L1 1219 5585 -298 4 873 7348 76 7 2 chr9 37768877 37769868 -86306304 + L1Md_F2 LINE L1 5587 6582 0 4 873 183 156 0 0 chr9 37769888 37769920 -86306252 + GA-rich Low_complexity Low_complexity 6 37 0 4 873 324 102 0 0 chr9 37769930 37769979 -86306193 + (CCA)n Simple_repeat Simple_repeat 1 49 0 4 873 4650 97 17 3 chr9 37770572 37771231 -86304941 + Lx LINE L1 5979 6646 -8 4 873 368 303 69 0 chr9 37772116 37772334 -86303838 + L1M5 LINE L1 2419 2651 -3495 4 873 243 0 0 0 chr9 37772701 37772728 -86303444 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 4 873 2891 144 32 35 chr9 37772843 37773136 -86303036 - L1_Mur2 LINE L1 -2253 3624 3341 4 873 495 0 0 0 chr9 37773136 37773191 -86302981 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4 873 2891 144 32 35 chr9 37773191 37773496 -86302676 - L1_Mur2 LINE L1 -2537 3340 3028 4 873 1334 94 0 30 chr9 37773496 37773694 -86302478 - B2_Mm2 SINE B2 0 195 4 4 873 530 164 1 0 chr9 37773905 37774008 -86302164 - L1_Mur2 LINE L1 -3087 3059 2921 4 873 362 211 36 102 chr9 37774014 37774151 -86302021 + RLTR16 LTR ERVK 24 151 -354 4 873 1637 172 25 0 chr9 37774525 37774850 -86301322 - L1_Mur2 LINE L1 -2948 2929 2597 4 873 28 61 0 0 chr9 37775975 37776024 -86300148 + AT_rich Low_complexity Low_complexity 1 49 0 4 873 2623 94 10 7 chr9 37776181 37776589 -86299583 - MusHAL1 LINE L1 -3 2709 2301 4 873 1896 247 112 106 chr9 37776608 37777517 -86298655 - RMER17B LTR ERVK -43 915 1 4 873 13008 86 15 16 chr9 37777518 37779513 -86296659 - MusHAL1 LINE L1 -407 2305 312 4 873 366 156 305 22 chr9 37779516 37779652 -86296520 - B2_Mm2 SINE B2 -8 187 10 4 873 972 109 14 7 chr9 37779682 37779830 -86296342 - B2_Mm1t SINE B2 -14 179 31 4 873 4933 103 39 2 chr9 37779831 37780779 -86295393 - L1VL4 LINE L1 -2375 1184 194 4 873 186 209 0 0 chr9 37781400 37781443 -86294729 + (CATA)n Simple_repeat Simple_repeat 4 46 0 4 873 4118 69 39 5 chr9 37781897 37782469 -86293703 - L1Md_F2 LINE L1 -3 6579 5989 4 873 21 0 0 0 chr9 37782811 37782832 -86293340 + AT_rich Low_complexity Low_complexity 1 21 0 4 873 281 388 73 29 chr9 37782909 37783238 -86292934 + LTR16B1 LTR ERVL 44 399 -81 4 873 2903 211 72 0 chr9 37783251 37783835 -86292337 - Lx5 LINE L1 0 7050 6425 4 873 430 231 62 56 chr9 37783840 37784019 -86292153 - RNLTR23 LTR ERVK 0 642 463 4 873 21564 179 38 28 chr9 37784254 37785353 -86290819 - Lx5 LINE L1 -628 6422 5289 4 873 2791 175 9 38 chr9 37785353 37785853 -86290319 - Lx LINE L1 -6 6648 6159 4 873 2479 65 3 0 chr9 37785853 37786162 -86290010 - RLTR10E LTR ERVK 0 311 2 4 873 2791 175 9 38 chr9 37786162 37786220 -86289952 - Lx LINE L1 -496 6158 6106 4 873 21564 173 35 49 chr9 37786220 37786295 -86289877 - Lx5 LINE L1 -589 5288 5223 4 873 4346 20 0 2 chr9 37786295 37786789 -86289383 + MT2_Mm LTR ERVL 1 493 0 4 873 21564 173 35 49 chr9 37786789 37787724 -86288448 - Lx5 LINE L1 -655 5222 4333 4 873 1071 137 0 0 chr9 37787724 37787899 -86288273 + (TTC)n Simple_repeat Simple_repeat 3 177 0 4 873 21564 173 35 49 chr9 37787899 37789133 -86287039 - Lx5 LINE L1 -1545 4332 3048 4 873 653 73 10 0 chr9 37789133 37789229 -86286943 + (TC)n Simple_repeat Simple_repeat 1 97 0 4 873 21564 173 35 49 chr9 37789229 37790308 -86285864 - Lx5 LINE L1 -2830 3047 2051 4 873 275 65 22 0 chr9 37790308 37790354 -86285818 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 873 456 19 0 0 chr9 37790354 37790406 -86285766 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 873 21564 165 33 37 chr9 37790406 37791521 -86284651 - Lx5 LINE L1 -3827 2050 909 4 873 405 0 0 0 chr9 37792202 37792247 -86283925 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 873 439 145 96 0 chr9 37792247 37792330 -86283842 - Lx9 LINE L1 -181 7463 7373 4 873 1752 248 42 7 chr9 37792322 37792753 -86283419 + Lx9 LINE L1 6917 7362 -282 4 873 271 257 104 39 chr9 37792798 37792875 -86283297 - PB1D10 SINE Alu -5 112 31 4 873 822 89 0 0 chr9 37792916 37793028 -86283144 - B1_Mm SINE Alu -2 145 34 4 873 292 122 0 0 chr9 37793302 37793351 -86282821 - Lx6 LINE L1 -15 7445 7397 4 873 1734 235 51 60 chr9 37793357 37793869 -86282303 + RLTR11A LTR ERVK 6 512 -16 4 873 6851 246 47 39 chr9 37793889 37794596 -86281576 - Lx6 LINE L1 -54 7406 6722 4 873 432 0 0 0 chr9 37794596 37794644 -86281528 + (TTA)n Simple_repeat Simple_repeat 2 49 0 4 873 6851 221 31 24 chr9 37794644 37796890 -86279282 - Lx6 LINE L1 -739 6721 4428 4 873 243 358 53 0 chr9 37797251 37797346 -86278826 - Charlie7 DNA MER1_type -2317 295 196 4 873 501 241 39 84 chr9 37797413 37797567 -86278605 - B1F2 SINE Alu -2 147 1 4 873 206 156 22 0 chr9 37797836 37797881 -86278291 + CT-rich Low_complexity Low_complexity 4 49 0 4 873 4929 169 23 66 chr9 37797919 37799031 -86277141 - L1_Mur3 LINE L1 -1454 4426 3362 4 873 346 346 52 9 chr9 37799029 37799242 -86276930 + Lx8 LINE L1 7250 7471 -2 4 873 198 0 0 0 chr9 37799754 37799776 -86276396 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 4 873 389 62 49 12 chr9 37801173 37801255 -86274917 + (CAAA)n Simple_repeat Simple_repeat 1 85 0 4 873 210 71 0 0 chr9 37801468 37801496 -86274676 + (T)n Simple_repeat Simple_repeat 1 28 0 4 873 1220 256 94 0 chr9 37801930 37802227 -86273945 + RMER1B Other Other 554 878 -188 4 873 390 358 0 0 chr9 37802227 37802336 -86273836 - PB1D10 SINE Alu 0 117 9 4 873 685 298 35 77 chr9 37803178 37803516 -86272656 + MLT1B LTR MaLR 37 360 -30 4 873 309 328 30 45 chr9 37803875 37804009 -86272163 + B1F SINE Alu 17 148 -1 4 873 202 216 39 0 chr9 37804068 37804119 -86272053 + A-rich Low_complexity Low_complexity 3 55 0 4 873 1060 92 74 11 chr9 37804757 37804933 -86271239 - L1_Mur2 LINE L1 -2253 3624 3438 4 873 3314 164 24 1 chr9 37804915 37805570 -86270602 - L1_Mur2 LINE L1 -2622 3255 2586 4 873 378 0 0 0 chr9 37805576 37805618 -86270554 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 873 1896 231 10 0 chr9 37805622 37806025 -86270147 + Lx5 LINE L1 6628 7034 -16 4 873 369 0 0 0 chr9 37806026 37806067 -86270105 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 873 329 278 66 33 chr9 37806073 37806255 -86269917 + RLTR15 LTR ERVK 133 320 -39 4 873 861 297 98 24 chr9 37806458 37806834 -86269338 - RMER5 LTR ERV1 -39 495 92 4 873 264 250 0 0 chr9 37806839 37806903 -86269269 + Lx8 LINE L1 6960 7023 -450 4 873 531 0 0 0 chr9 37807583 37807642 -86268530 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 873 306 50 0 0 chr9 37807642 37807681 -86268491 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 873 372 22 0 0 chr9 37809309 37809354 -86266818 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 873 423 0 0 0 chr9 37809385 37809432 -86266740 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 873 266 324 29 29 chr9 37809830 37809935 -86266237 + LTR16B1 LTR ERVL 376 480 0 4 873 340 113 75 0 chr9 37810022 37810075 -86266097 - RMER12 LTR ERVK -1265 57 1 4 873 449 179 24 0 chr9 37810293 37810370 -86265802 - ORR1A3 LTR MaLR 0 326 248 4 873 2010 129 6 6 chr9 37810370 37810681 -86265491 - ORR1A3 LTR MaLR 0 326 16 4 873 228 270 30 60 chr9 37811169 37811236 -86264936 - ID4 SINE ID -14 69 5 4 873 1478 128 4 30 chr9 37811464 37811730 -86264442 + Lx LINE L1 6396 6654 0 4 873 1078 184 157 3 chr9 37812521 37812826 -86263346 + Lx5 LINE L1 2809 3160 -2717 4 873 37537 19 3 7 chr9 37812827 37818022 -86258150 + Lx LINE L1 416 5587 -296 4 873 8285 40 1 0 chr9 37818022 37819016 -86257156 + L1Md_T LINE L1 5588 6582 0 4 873 37537 155 20 264 chr9 37819016 37823405 -86252767 + Lx LINE L1 3146 6653 -1 4 873 188 0 0 69 chr9 37823407 37823436 -86252736 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 4 873 4672 114 18 0 chr9 37823487 37824169 -86252003 + L1_Mus3 LINE L1 5920 6613 -25 4 873 33 80 0 0 chr9 37824173 37824248 -86251924 + AT_rich Low_complexity Low_complexity 1 75 0 4 873 6568 210 34 8 chr9 37824254 37826499 -86249673 + Lx5 LINE L1 4748 7049 -1 4 873 576 256 20 100 chr9 37826578 37826877 -86249295 + RLTR19-int LTR ERVK 3422 3696 -2441 4 873 651 13 0 0 chr9 37827008 37827084 -86249088 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 873 380 297 65 110 chr9 37827091 37827337 -86248835 + RLTR19-int LTR ERVK 3879 4113 -2024 4 873 365 260 80 75 chr9 37827408 37827560 -86248612 + RLTR19-int LTR ERVK 4128 4275 -1862 4 873 1320 148 29 34 chr9 37827560 37827798 -86248374 + L1Md_F2 LINE L1 6334 6570 -12 4 873 365 260 80 75 chr9 37827798 37827832 -86248340 + RLTR19-int LTR ERVK 4276 4314 -1823 4 873 1660 100 7 37 chr9 37827960 37828229 -86247943 + L1_Mm LINE L1 4022 4282 -1601 4 873 4450 96 2 3 chr9 37828229 37828843 -86247329 + L1_Mus1 LINE L1 5954 6566 -1 4 873 239 317 20 0 chr9 37829525 37829626 -86246546 + CT-rich Low_complexity Low_complexity 5 107 0 4 873 979 142 0 11 chr9 37829975 37830153 -86246019 + CT-rich Low_complexity Low_complexity 3 178 0 4 873 887 302 38 12 chr9 37830710 37831111 -86245061 + Lx8 LINE L1 6047 6456 -1240 4 873 1171 361 86 16 chr9 37831500 37832239 -86243933 + Lx8 LINE L1 6508 7303 -170 4 873 447 19 0 0 chr9 37832239 37832291 -86243881 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 873 627 14 0 0 chr9 37832291 37832362 -86243810 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 873 1171 361 86 16 chr9 37832362 37832514 -86243658 + Lx8 LINE L1 7304 7462 -11 4 873 1506 122 40 12 chr9 37834504 37834754 -86241418 + Lx LINE L1 6395 6651 -3 4 873 216 0 0 0 chr9 37836006 37836030 -86240142 + (T)n Simple_repeat Simple_repeat 1 24 0 4 873 1059 34 27 0 chr9 37836915 37837062 -86239110 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 4 873 793 360 38 0 chr9 37838245 37838509 -86237663 + RMER1A Other Other 182 455 -575 4 873 2362 255 58 2 chr9 37838479 37839048 -86237124 + RMER1A Other Other 295 895 -135 4 873 1699 233 126 8 chr9 37839073 37839610 -86236562 - RLTR1 LTR ERV1 0 624 1 4 873 926 310 3 13 chr9 37840049 37840366 -86235806 + L1VL4 LINE L1 185 498 -5804 4 873 1779 103 107 0 chr9 37840366 37840638 -86235534 - RLTR9A LTR ERVK 0 368 68 4 873 259 284 54 47 chr9 37840736 37840865 -86235307 - ETnERV2-int LTR ERVK -969 6437 6308 4 873 1851 253 14 25 chr9 37840933 37841446 -86234726 - ETnERV2-int LTR ERVK -1195 6211 5762 4 873 4360 112 40 3 chr9 37841479 37842160 -86234012 - L1_Mus3 LINE L1 -6 6632 5927 4 873 27565 118 9 8 chr9 37842162 37847488 -86228684 - L1VL1 LINE L1 -331 5552 217 4 873 15742 175 46 8 chr9 37847482 37850712 -86225460 + L1_Mur1 LINE L1 1793 5146 -740 4 873 2759 133 57 6 chr9 37850710 37851180 -86224992 + L1_Mur1 LINE L1 4729 5222 -664 4 873 3128 129 43 137 chr9 37851182 37851991 -86224181 - RMER17A LTR ERVK -18 733 1 4 873 798 305 61 12 chr9 37852257 37852599 -86223573 + Lx8 LINE L1 6102 6460 -1013 4 873 1249 334 70 44 chr9 37852974 37853939 -86222233 + Lx8 LINE L1 6518 7472 -1 4 873 859 231 85 19 chr9 37857802 37858062 -86218110 + RLTR42-int LTR ERVK 1120 1396 -4126 5 873 477 0 0 0 chr9 37858084 37858137 -86218035 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 5 873 266 191 0 0 chr9 37858353 37858395 -86217777 + RLTR42-int LTR ERVK 1754 1795 -3727 5 873 344 85 36 24 chr9 37859226 37859310 -86216862 + (TTTTTG)n Simple_repeat Simple_repeat 1 85 0 5 873 626 351 20 8 chr9 37859388 37859399 -86216773 + RMER1A Other Other 151 161 -869 5 873 207 0 0 0 chr9 37859399 37859422 -86216750 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 873 626 351 20 8 chr9 37859422 37859657 -86216515 + RMER1A Other Other 162 399 -631 5 873 2184 268 70 0 chr9 37859664 37860224 -86215948 + RMER1A Other Other 283 881 -149 5 873 297 0 0 0 chr9 37860225 37860258 -86215914 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 873 3066 214 29 32 chr9 37860852 37861175 -86214997 + RMER6D LTR ERVK 20 348 -372 5 873 853 89 5 23 chr9 37861175 37861397 -86214775 + (TAGA)n Simple_repeat Simple_repeat 1 217 0 5 873 3066 214 29 32 chr9 37861397 37861760 -86214412 + RMER6D LTR ERVK 349 707 -13 5 873 317 229 28 28 chr9 37861778 37861886 -86214286 + RLTR42-int LTR ERVK 1953 2060 -3462 5 873 487 303 92 57 chr9 37861919 37862287 -86213885 + RLTR42-int LTR ERVK 2330 2710 -3427 5 873 337 235 100 85 chr9 37862545 37862675 -86213497 + RLTR42-int LTR ERVK 2906 3037 -3100 5 873 278 302 43 8 chr9 37862946 37863063 -86213109 + Lx5 LINE L1 391 511 -6575 5 873 5559 200 46 24 chr9 37863047 37864344 -86211828 + Lx5 LINE L1 740 2066 -3811 5 873 444 19 0 0 chr9 37864344 37864397 -86211775 + (CCA)n Simple_repeat Simple_repeat 1 53 0 5 873 7367 198 34 25 chr9 37864397 37865164 -86211008 + Lx5 LINE L1 4284 4604 -1273 5 873 180 0 0 0 chr9 37865164 37865184 -86210988 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 873 7367 208 20 16 chr9 37865184 37866759 -86209413 + Lx5 LINE L1 4605 6208 -842 5 873 250 278 21 96 chr9 37866897 37867084 -86209088 + RLTR42-int LTR ERVK 3526 3698 -2439 5 873 1139 345 82 26 chr9 37867107 37867812 -86208360 + Lx8 LINE L1 6561 7304 -169 5 873 540 0 0 0 chr9 37867812 37867872 -86208300 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 873 1139 345 82 26 chr9 37867872 37868022 -86208150 + Lx8 LINE L1 7305 7464 -9 5 873 247 307 53 0 chr9 37869898 37869973 -86206199 + ID4 SINE ID 3 81 -2 5 873 285 325 0 49 chr9 37870344 37870425 -86205747 - ID4 SINE ID -3 80 4 5 873 1114 294 54 15 chr9 37871038 37871373 -86204799 + Lx6 LINE L1 6908 7255 -205 5 873 366 23 0 0 chr9 37871952 37871995 -86204177 + (CTA)n Simple_repeat Simple_repeat 2 44 0 5 873 307 356 19 19 chr9 37872397 37872503 -86203669 - PB1D10 SINE Alu 0 117 12 5 873 417 20 0 0 chr9 37872709 37872759 -86203413 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 873 468 309 61 110 chr9 37873345 37873745 -86202427 + MLT1B LTR MaLR 16 467 0 5 873 3308 145 35 0 chr9 37873781 37874039 -86202133 + L1_Mm LINE L1 3218 3475 -2408 5 873 201 94 0 0 chr9 37874039 37874071 -86202101 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 5 873 3308 145 35 0 chr9 37874071 37874384 -86201788 + L1_Mm LINE L1 3476 3807 -2076 5 873 2467 198 39 62 chr9 37874386 37875440 -86200732 - L1VL4 LINE L1 -2354 1205 181 5 873 1056 96 0 17 chr9 37875479 37875660 -86200512 - MusHAL1 LINE L1 -2501 211 34 5 873 290 210 16 0 chr9 37875699 37875761 -86200411 - L1Md_F LINE L1 -5801 718 656 5 873 746 274 123 34 chr9 37876648 37876973 -86199199 - RMER5 LTR ERV1 -39 495 142 5 873 386 305 15 8 chr9 37876990 37877122 -86199050 + Lx8 LINE L1 6930 7062 -411 5 873 675 0 0 0 chr9 37877305 37877380 -86198792 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 5 873 191 36 0 35 chr9 37877480 37877509 -86198663 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 5 873 2729 28 0 0 chr9 37877537 37877859 -86198313 + RLTRETN_Mm LTR ERVK 1 322 0 5 873 207 321 18 0 chr9 37878449 37878558 -86197614 + (CATTT)n Simple_repeat Simple_repeat 5 115 0 5 873 1450 189 62 100 chr9 37878922 37879292 -86196880 + ORR1B1 LTR MaLR 39 394 0 5 109 7316 184 51 109 chr9 37879293 37881374 -86194798 + ORR1B1-int LTR MaLR 2 1963 0 5 874 669 171 0 0 chr9 37881388 37881499 -86194673 + ORR1B1 LTR MaLR 276 386 -8 5 874 229 273 0 0 chr9 37881575 37881630 -86194542 + (CATA)n Simple_repeat Simple_repeat 2 56 0 5 874 322 173 0 138 chr9 37882216 37882303 -86193869 + MT2B LTR ERVL 166 240 -361 5 874 636 214 7 21 chr9 37882225 37882368 -86193804 + B1_Mur4 SINE Alu 9 149 -1 5 874 203 102 58 58 chr9 37882374 37882426 -86193746 + (CAAAC)n Simple_repeat Simple_repeat 3 54 0 5 874 25 90 0 0 chr9 37882647 37882714 -86193458 + AT_rich Low_complexity Low_complexity 1 67 0 5 874 696 78 267 0 chr9 37883029 37883145 -86193027 - B1_Mm SINE Alu 0 147 1 5 874 317 297 76 11 chr9 37883807 37883899 -86192273 - Lx8 LINE L1 -219 7254 7157 5 874 504 306 8 0 chr9 37883936 37884070 -86192102 + Lx8 LINE L1 7207 7341 -132 5 874 244 269 30 0 chr9 37884224 37884291 -86191881 + Lx7 LINE L1 6106 6174 -1522 5 874 2215 109 21 12 chr9 37884311 37884637 -86191535 - L1_Mus3 LINE L1 -14 6624 6296 5 874 435 145 0 0 chr9 37884637 37884706 -86191466 + L1_Mus3 LINE L1 6260 6328 -310 5 874 1990 192 16 16 chr9 37884715 37885085 -86191087 - ORR1B1 LTR MaLR -8 386 17 5 874 2034 176 105 93 chr9 37885157 37885708 -86190464 - ORR1B1-int LTR MaLR -1405 558 1 5 874 1373 224 19 56 chr9 37885708 37885782 -86190390 - ORR1B1 LTR MaLR 0 394 334 5 874 1716 89 50 4 chr9 37885782 37886042 -86190130 - L1_Mus4 LINE L1 -5 6631 6360 5 874 1373 233 19 61 chr9 37886042 37886290 -86189882 - ORR1B1 LTR MaLR -61 333 81 5 874 714 239 64 30 chr9 37886290 37886493 -86189679 - LTRIS4 LTR ERV1 0 507 298 5 874 1583 59 0 0 chr9 37886493 37886695 -86189477 - L1_Mm LINE L1 -627 5256 5055 5 874 2230 68 48 16 chr9 37886695 37887008 -86189164 + L1Md_F2 LINE L1 6260 6582 0 5 874 485 176 0 0 chr9 37887295 37887380 -86188792 - ORR1B1 LTR MaLR -307 87 3 5 874 664 289 84 13 chr9 37887382 37887680 -86188492 + Lx7 LINE L1 6183 6501 -1195 5 874 1125 30 30 6 chr9 37888300 37888467 -86187705 + (TCTA)n Simple_repeat Simple_repeat 3 173 0 5 874 21 36 0 0 chr9 37888471 37888499 -86187673 + AT_rich Low_complexity Low_complexity 1 28 0 5 874 231 281 0 0 chr9 37888537 37888594 -86187578 + CT-rich Low_complexity Low_complexity 4 60 0 5 874 1010 137 0 0 chr9 37888754 37888900 -86187272 - B1_Mus1 SINE Alu -1 147 2 5 874 516 345 61 28 chr9 37889627 37889835 -86186337 + Lx8 LINE L1 6054 6266 -1430 5 874 396 0 0 0 chr9 37889835 37889879 -86186293 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 5 874 516 336 48 14 chr9 37889879 37890087 -86186085 + Lx8 LINE L1 6267 6483 -990 5 874 871 338 111 39 chr9 37890433 37891246 -86184926 + Lx8 LINE L1 6469 7339 -134 5 874 264 167 0 0 chr9 37891263 37891335 -86184837 + A-rich Low_complexity Low_complexity 1 72 0 5 874 240 113 45 61 chr9 37891843 37891909 -86184263 + T-rich Low_complexity Low_complexity 2 66 0 5 874 243 246 68 34 chr9 37893416 37893475 -86182697 + ID4 SINE ID 3 63 -20 5 874 439 69 28 0 chr9 37893865 37893937 -86182235 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 874 318 337 11 92 chr9 37895591 37895712 -86180460 - PB1D10 SINE Alu -3 146 39 5 874 5606 119 112 25 chr9 37895712 37896654 -86179518 - RLTR13D2 LTR ERVK 0 1023 1 5 874 318 328 8 72 chr9 37896654 37896697 -86179475 - PB1D10 SINE Alu -79 38 1 5 874 435 19 0 0 chr9 37897114 37897166 -86179006 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 874 1481 0 0 0 chr9 37897493 37897663 -86178509 - L1Md_A LINE L1 0 6582 6413 5 874 243 0 0 0 chr9 37897716 37897743 -86178429 + (T)n Simple_repeat Simple_repeat 1 27 0 5 874 207 100 0 0 chr9 37897852 37897882 -86178290 + (TTA)n Simple_repeat Simple_repeat 3 32 0 5 874 544 293 66 108 chr9 37897955 37898242 -86177930 + MLT1B LTR MaLR 86 360 -30 5 874 198 103 0 0 chr9 37898698 37898727 -86177445 + (CCAA)n Simple_repeat Simple_repeat 2 30 0 5 874 29039 122 9 31 chr9 37898831 37902854 -86173318 + L1_Mus3 LINE L1 301 4165 -1718 5 874 1053 104 14 0 chr9 37902854 37902998 -86173174 - B1_Mm SINE Alu 0 147 2 5 874 29039 111 8 17 chr9 37902998 37905474 -86170698 + L1_Mus3 LINE L1 4166 6638 0 5 874 339 85 0 0 chr9 37905758 37905805 -86170367 + (GGA)n Simple_repeat Simple_repeat 3 49 0 5 874 1605 90 13 0 chr9 37906708 37906942 -86169230 - Lx3_Mus LINE L1 -3 7006 6770 5 874 4012 88 20 40 chr9 37906942 37907536 -86168636 + Lx3_Mus LINE L1 6187 6768 -241 5 874 3391 227 43 34 chr9 37907851 37908829 -86167343 - RLTR25A LTR ERVK 0 1028 1 5 874 8058 150 42 4 chr9 37909038 37910373 -86165799 - Lx2B LINE L1 0 7000 5615 5 874 5021 103 25 0 chr9 37910858 37911587 -86164585 - Lx3_Mus LINE L1 -5 7004 6258 5 874 8101 82 36 19 chr9 37911588 37912839 -86163333 - L1_Mur1 LINE L1 -1703 4183 2912 5 874 5188 167 52 26 chr9 37912838 37913893 -86162279 - L1_Mur2 LINE L1 -1401 4476 3394 5 874 1982 336 75 46 chr9 37914054 37915458 -86160714 + Lx8 LINE L1 6028 7472 -1 5 874 222 306 26 78 chr9 37917280 37917409 -86158763 + BC1_Mm scRNA scRNA 2 123 -29 5 874 238 369 52 8 chr9 37917476 37917610 -86158562 + RMER15 LTR ERVL 422 561 -14 5 874 471 35 0 0 chr9 37920503 37920560 -86155612 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 874 664 303 33 70 chr9 37921286 37921556 -86154616 + MLT1B LTR MaLR 102 361 -29 5 874 906 74 26 20 chr9 37921699 37921850 -86154322 - L1Md_F2 LINE L1 -3 6579 6428 5 874 379 310 47 0 chr9 37922024 37922153 -86154019 + B1F SINE Alu 2 136 -13 5 874 525 16 0 0 chr9 37922159 37922221 -86153951 + (TCCA)n Simple_repeat Simple_repeat 2 63 0 5 874 534 309 55 30 chr9 37922291 37922528 -86153644 + Lx8 LINE L1 7231 7473 0 5 874 231 204 0 0 chr9 37924934 37924988 -86151184 + T-rich Low_complexity Low_complexity 2 55 0 5 874 1600 47 0 0 chr9 37925211 37925404 -86150768 + B2_Mm1t SINE B2 1 193 0 5 874 3308 80 32 25 chr9 37925432 37925906 -86150266 - L1Md_F2 LINE L1 0 6582 6106 5 874 22 0 0 0 chr9 37926037 37926059 -86150113 + AT_rich Low_complexity Low_complexity 1 22 0 5 874 233 344 0 0 chr9 37926079 37926143 -86150029 - ID4 SINE ID -15 68 5 5 874 969 298 37 56 chr9 37927830 37928260 -86147912 + RLTR42-int LTR ERVK 1105 1526 -3996 5 874 323 210 12 12 chr9 37928236 37928318 -86147854 + RLTR42-int LTR ERVK 896 977 -5160 5 874 30 0 0 0 chr9 37928398 37928428 -86147744 + AT_rich Low_complexity Low_complexity 1 30 0 5 874 322 152 0 0 chr9 37928428 37928474 -86147698 + RLTR42-int LTR ERVK 1750 1795 -3727 5 874 27 0 0 0 chr9 37928555 37928582 -86147590 + AT_rich Low_complexity Low_complexity 1 27 0 5 874 15405 155 56 15 chr9 37928919 37932416 -86143756 + L1_Mus3 LINE L1 2999 6636 -2 5 874 3511 117 62 8 chr9 37932415 37932951 -86143221 + Lx LINE L1 5827 6391 -263 5 874 2563 178 64 59 chr9 37932962 37933821 -86142351 - RLTR13D1 LTR ERVK 0 855 53 5 874 925 301 74 3 chr9 37933828 37934155 -86142017 + RMER1A Other Other 75 549 -481 5 874 688 236 55 135 chr9 37934302 37934739 -86141433 + RLTR42-int LTR ERVK 1855 2256 -3266 5 874 359 324 50 68 chr9 37934717 37934995 -86141177 + MYSERV6-int LTR ERVK 7216 7488 -1471 5 874 194 83 0 53 chr9 37935594 37935632 -86140540 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 874 1071 89 0 14 chr9 37935632 37935780 -86140392 - B1_Mus1 SINE Alu -1 147 2 5 874 264 30 0 0 chr9 37935782 37935815 -86140357 + (TTTTTG)n Simple_repeat Simple_repeat 5 37 0 6 874 4927 219 55 38 chr9 37935821 37936982 -86139190 - Lx5 LINE L1 -3 7047 5867 6 874 22047 183 23 16 chr9 37937361 37942820 -86133352 - L1VL2 LINE L1 -213 5670 300 6 874 806 287 116 29 chr9 37942962 37943489 -86132683 - L1MA4A LINE L1 -389 5914 5336 6 874 288 0 0 0 chr9 37943681 37943713 -86132459 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 874 410 320 78 31 chr9 37943717 37943975 -86132197 + Lx8 LINE L1 6709 6978 -495 6 874 661 273 74 32 chr9 37943977 37944193 -86131979 - RLTR25B LTR ERVK -2 1026 802 6 874 414 304 48 55 chr9 37944359 37944689 -86131483 - L1M1 LINE L1 -653 5647 5320 6 874 11996 160 47 30 chr9 37944734 37948287 -86127885 - Lx2B LINE L1 -5 6995 3394 6 874 2262 333 64 37 chr9 37948448 37949856 -86126316 + Lx8 LINE L1 6028 7473 0 6 874 247 0 51 26 chr9 37950233 37950272 -86125900 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 874 298 303 15 0 chr9 37951729 37951806 -86124366 + BC1_Mm scRNA scRNA 2 79 -4 6 874 296 349 63 8 chr9 37951935 37952062 -86124110 + RMER15 LTR ERVL 430 563 -12 6 874 21 36 0 0 chr9 37952232 37952260 -86123912 + AT_rich Low_complexity Low_complexity 1 28 0 6 874 27 29 0 0 chr9 37952930 37952964 -86123208 + AT_rich Low_complexity Low_complexity 1 34 0 6 874 326 266 172 31 chr9 37954648 37954776 -86121396 - ID_B1 SINE B4 0 224 79 6 874 1227 94 0 0 chr9 37955102 37955272 -86120900 - L1Md_F2 LINE L1 -470 6112 5943 6 874 3140 73 14 14 chr9 37955272 37955717 -86120455 + L1Md_F2 LINE L1 6136 6580 -2 6 874 7563 37 41 2 chr9 37956217 37957139 -86119033 - RLTR13A2 LTR ERVK 0 958 1 6 874 686 275 58 54 chr9 37957243 37957485 -86118687 + MLT1B LTR MaLR 107 349 -41 6 874 197 182 0 18 chr9 37957797 37957853 -86118319 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 874 284 307 47 8 chr9 37957859 37957987 -86118185 + B1F1 SINE Alu 2 134 -15 6 874 510 98 0 0 chr9 37957993 37958075 -86118097 + (CCAA)n Simple_repeat Simple_repeat 2 83 0 6 874 903 293 145 9 chr9 37958808 37959152 -86117020 + Lx6 LINE L1 6866 7256 -204 6 874 21 0 0 0 chr9 37959287 37959308 -86116864 + AT_rich Low_complexity Low_complexity 1 21 0 6 874 192 40 0 0 chr9 37959944 37959969 -86116203 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 874 657 239 105 135 chr9 37959983 37960611 -86115561 - RMER12B LTR ERVK -226 1346 890 6 874 1389 244 42 92 chr9 37960630 37961171 -86115001 - RLTR31_Mur LTR ERVK -32 521 8 6 874 2853 219 14 19 chr9 37961192 37961820 -86114352 - RMER12B LTR ERVK -773 631 7 6 874 465 304 43 55 chr9 37962414 37962668 -86113504 + RLTR11A2 LTR ERVK 5 255 -272 6 874 472 213 3 48 chr9 37962814 37962944 -86113228 - RLTR22_Mur LTR ERVK 0 1848 1696 6 874 685 83 8 8 chr9 37963089 37963211 -86112961 - L1_Mus4 LINE L1 -5 6631 6510 6 874 1221 117 35 59 chr9 37963212 37963576 -86112596 - MMERVK10C-int LTR ERVK -7311 270 10 6 874 348 110 95 14 chr9 37963568 37963642 -86112530 - MMERVK10C-int LTR ERVK -1905 82 3 6 874 2413 103 141 5 chr9 37963644 37964062 -86112110 - IAPLTR2_Mm LTR ERVK 0 475 1 6 874 868 315 26 4 chr9 37964064 37964335 -86111837 + Lx6 LINE L1 6976 7252 -208 6 874 484 302 64 12 chr9 37964738 37964909 -86111263 + L1_Mur2 LINE L1 442 621 -6091 6 874 2142 113 0 3 chr9 37964909 37965236 -86110936 + BGLII LTR ERVK 1 326 -95 6 874 5419 200 40 9 chr9 37965236 37966280 -86109892 + Lx2B LINE L1 5779 6856 -144 6 874 504 0 0 0 chr9 37966280 37966336 -86109836 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 874 5419 200 40 9 chr9 37966336 37966476 -86109696 + Lx2B LINE L1 6857 6999 -1 6 874 569 90 0 11 chr9 37966476 37966566 -86109606 + (GAAA)n Simple_repeat Simple_repeat 1 89 0 6 874 410 222 8 230 chr9 37966566 37966726 -86109446 - RMER12 LTR ERVK -653 669 550 6 874 1140 115 37 27 chr9 37966726 37966914 -86109258 - B2_Mm2 SINE B2 -4 191 2 6 874 410 222 8 230 chr9 37966914 37967005 -86109167 - RMER12 LTR ERVK -773 549 474 6 874 1371 226 159 52 chr9 37967028 37967064 -86109108 - RLTR20B3 LTR ERVK -62 515 481 6 874 468 0 0 0 chr9 37967064 37967116 -86109056 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 874 1371 226 159 52 chr9 37967116 37967526 -86108646 - RLTR20B3 LTR ERVK -97 480 23 6 874 2335 221 75 15 chr9 37967527 37968064 -86108108 - RMER12B LTR ERVK -825 579 11 6 874 216 361 31 63 chr9 37968222 37968349 -86107823 - ID_B1 SINE B4 -55 169 47 6 874 736 269 54 29 chr9 37968826 37969105 -86107067 + RLTR11A2 LTR ERVK 5 290 -237 6 874 345 323 12 31 chr9 37969204 37969364 -86106808 + RLTR11A2 LTR ERVK 284 440 -13 6 874 727 285 42 82 chr9 37969660 37969998 -86106174 + MLT1B LTR MaLR 33 354 -36 6 874 231 364 15 0 chr9 37970069 37970135 -86106037 - ID4 SINE ID -2 81 15 6 874 278 333 57 43 chr9 37970162 37970303 -86105869 - B1F2 SINE Alu -6 143 1 6 874 289 309 117 0 chr9 37970383 37970477 -86105695 + B1F1 SINE Alu 23 127 -22 6 874 1159 248 183 61 chr9 37970477 37970953 -86105219 - RLTR20C LTR ERVK 0 534 1 6 874 4035 209 55 35 chr9 37970962 37971696 -86104476 - MYSERV16_I-int LTR ERVK -9 2833 1509 6 874 1097 83 21 0 chr9 37971696 37971840 -86104332 + B1_Mus1 SINE Alu 2 148 0 6 874 4035 171 52 8 chr9 37971840 37972266 -86103906 - MYSERV16_I-int LTR ERVK -818 1508 1058 6 874 595 113 9 9 chr9 37972256 37972363 -86103809 - MYSERV16_I-int LTR ERVK -1385 941 835 6 874 474 263 63 10 chr9 37972392 37972460 -86103712 - RLTR20C LTR ERVK -44 534 448 6 874 378 0 0 0 chr9 37972460 37972502 -86103670 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 874 474 238 67 0 chr9 37972502 37972559 -86103613 - RLTR20C LTR ERVK -91 487 424 6 874 1040 220 52 98 chr9 37972556 37972883 -86103289 - RLTR20C LTR ERVK -222 312 1 6 874 206 143 0 20 chr9 37972903 37972953 -86103219 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 6 874 312 63 0 0 chr9 37973604 37973649 -86102523 - L1_Mm LINE L1 -753 5127 5086 6 874 2520 50 6 0 chr9 37973647 37973987 -86102185 + L1Md_F2 LINE L1 2966 3307 -2576 6 874 3955 30 0 0 chr9 37973988 37974454 -86101718 + L1Md_F2 LINE L1 5121 5586 -297 6 874 7645 45 26 2 chr9 37974454 37975424 -86100748 + L1Md_F2 LINE L1 5587 6579 -3 6 874 3732 146 56 78 chr9 37975434 37976258 -86099914 - RLTR13D1 LTR ERVK 0 806 1 6 874 2567 156 26 6 chr9 37976258 37976756 -86099416 + L1_Mur2 LINE L1 1479 1986 -3891 6 874 1819 222 43 15 chr9 37976756 37977150 -86099022 + RMER20A LTR ERVK 1 405 -111 6 874 28 29 0 0 chr9 37977150 37977185 -86098987 + AT_rich Low_complexity Low_complexity 1 35 0 6 874 27 0 0 0 chr9 37977293 37977320 -86098852 + AT_rich Low_complexity Low_complexity 1 27 0 6 874 235 91 0 0 chr9 37977320 37977353 -86098819 - L1_Mur1 LINE L1 -2930 2956 2924 6 874 23 0 0 0 chr9 37977767 37977790 -86098382 + AT_rich Low_complexity Low_complexity 1 23 0 6 874 1851 84 4 0 chr9 37977796 37978069 -86098103 - L1VL2 LINE L1 -626 2989 2716 6 874 11097 62 5 5 chr9 37978068 37978722 -86097450 + L1Md_F2 LINE L1 4158 4817 -1066 6 874 2440 125 38 44 chr9 37978722 37979200 -86096972 - IAPLTR2_Mm LTR ERVK 0 475 1 6 874 11097 62 5 5 chr9 37979200 37979974 -86096198 + L1Md_F2 LINE L1 4818 5586 -297 6 874 7962 46 11 1 chr9 37979974 37980959 -86095213 + L1Md_F2 LINE L1 5587 6581 -1 6 874 222 226 0 0 chr9 37980972 37981025 -86095147 + A-rich Low_complexity Low_complexity 1 53 0 6 874 11550 104 15 10 chr9 37981025 37983434 -86092738 - L1VL2 LINE L1 -903 2712 288 6 874 382 237 29 64 chr9 37983447 37983587 -86092585 - Lx LINE L1 -12 6642 6508 6 874 512 64 32 11 chr9 37984537 37984632 -86091540 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 6 874 295 374 105 113 chr9 37984936 37985298 -86090874 - ORR1E LTR MaLR 0 359 1 6 874 28 61 0 0 chr9 37985354 37985403 -86090769 + AT_rich Low_complexity Low_complexity 1 49 0 6 874 22 35 0 0 chr9 37985437 37985466 -86090706 + AT_rich Low_complexity Low_complexity 1 29 0 6 874 438 20 0 0 chr9 37985773 37985824 -86090348 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 6 874 204 40 0 0 chr9 37988809 37988834 -86087338 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 874 29 0 0 0 chr9 37989611 37989640 -86086532 + AT_rich Low_complexity Low_complexity 1 29 0 6 874 239 303 15 0 chr9 37989675 37989741 -86086431 + ID4_ SINE ID 1 67 -16 6 874 355 278 55 105 chr9 37989914 37990095 -86086077 - MER20 DNA MER1_type 0 219 48 6 874 1132 206 60 21 chr9 37990118 37990351 -86085821 - ORR1B2 LTR MaLR -8 359 118 6 874 5002 120 15 6 chr9 37990352 37991149 -86085023 + RLTR22_Mur LTR ERVK 1 804 -1044 6 874 427 321 45 54 chr9 37991337 37991561 -86084611 + RMER12 LTR ERVK 1101 1322 0 6 874 541 168 23 85 chr9 37991561 37991665 -86084507 - ORR1B2 LTR MaLR -245 122 26 6 874 1080 132 0 71 chr9 37991665 37991861 -86084311 + Lx2 LINE L1 6816 6997 0 6 874 541 168 23 85 chr9 37991861 37991886 -86084286 - ORR1B2 LTR MaLR -342 25 1 6 874 306 0 0 0 chr9 37993728 37993762 -86082410 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 6 874 695 248 33 43 chr9 37994095 37994306 -86081866 - ORR1D1 LTR MaLR -18 356 148 6 874 542 86 12 0 chr9 37994306 37994387 -86081785 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 874 717 184 65 14 chr9 37994388 37994526 -86081646 - ORR1D1 LTR MaLR -188 186 42 6 874 4229 82 18 2 chr9 37994526 37995152 -86081020 - MusHAL1 LINE L1 -380 2332 1697 6 874 263 352 46 23 chr9 37995327 37995458 -86080714 - RMER5 LTR ERV1 0 534 401 6 874 3341 39 2 7 chr9 37995465 37995877 -86080295 + L1Md_F2 LINE L1 6173 6582 0 6 874 872 36 0 9 chr9 37996013 37996126 -86080046 + (CATATA)n Simple_repeat Simple_repeat 3 114 0 6 874 1232 3 42 0 chr9 37996735 37997042 -86079130 + (TCTA)n Simple_repeat Simple_repeat 1 320 0 6 874 21 0 0 0 chr9 37998284 37998305 -86077867 + AT_rich Low_complexity Low_complexity 1 21 0 6 874 397 274 70 61 chr9 37998589 37998803 -86077369 - B3 SINE B2 0 216 1 6 874 24 32 0 0 chr9 37999187 37999218 -86076954 + AT_rich Low_complexity Low_complexity 1 31 0 6 874 204 40 0 0 chr9 37999700 37999725 -86076447 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 6 874 3935 161 37 57 chr9 38000828 38001612 -86074560 - Lx3C LINE L1 -9 6967 6200 1 874 231 212 15 0 chr9 38001608 38001674 -86074498 - L1_Mur3 LINE L1 -2448 3432 3366 2 874 405 0 0 0 chr9 38001675 38001720 -86074452 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 874 219 103 0 0 chr9 38001720 38001759 -86074413 + (T)n Simple_repeat Simple_repeat 1 39 0 4 874 1432 194 31 36 chr9 38001769 38002160 -86074012 - L1_Mur3 LINE L1 -2524 3356 2968 2 874 346 332 68 74 chr9 38002605 38002716 -86073456 - Lx8 LINE L1 -250 7223 7109 5 874 522 0 0 0 chr9 38002716 38002774 -86073398 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 874 346 332 68 74 chr9 38002774 38003042 -86073130 - Lx8 LINE L1 -365 7108 6846 5 874 1876 14 0 0 chr9 38003059 38003270 -86072902 + L1Md_A LINE L1 5376 5586 -297 7 874 8763 14 1 0 chr9 38003270 38004265 -86071907 + L1Md_A LINE L1 5587 6582 0 7 874 428 299 118 90 chr9 38004500 38004963 -86071209 - RMER13A LTR ERVK -80 547 34 8 874 3243 265 39 19 chr9 38005006 38005951 -86070221 - Lx7 LINE L1 -301 7395 6432 9 874 23 0 0 0 chr9 38005958 38005981 -86070191 + AT_rich Low_complexity Low_complexity 1 23 0 1 874 580 185 73 5 chr9 38005981 38006128 -86070044 - Lx3A LINE L1 0 7009 6837 1 874 827 144 0 17 chr9 38006150 38006217 -86069955 + polypyrimidine Low_complexity Low_complexity 109 174 0 1 874 198 0 0 0 chr9 38006217 38006239 -86069933 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 874 827 144 0 17 chr9 38006239 38006348 -86069824 + polypyrimidine Low_complexity Low_complexity 1 108 0 1 874 375 23 0 0 chr9 38006374 38006418 -86069754 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 874 378 0 0 0 chr9 38006429 38006471 -86069701 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 874 1708 227 90 29 chr9 38006493 38006970 -86069202 - Lx7 LINE L1 -1321 6375 5870 9 874 236 287 51 41 chr9 38006977 38007075 -86069097 - Lx8 LINE L1 -466 7007 6909 1 874 628 275 59 35 chr9 38007081 38007398 -86068774 + L1M4 LINE L1 4677 5013 -1127 1 874 346 313 163 5 chr9 38007533 38007729 -86068443 + RMER15 LTR ERVL 227 453 -122 1 874 420 20 0 0 chr9 38007832 38007881 -86068291 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 874 33161 76 12 7 chr9 38007980 38009720 -86066452 - L1Md_F2 LINE L1 -2 6580 4839 2 874 3204 192 33 66 chr9 38009720 38010604 -86065568 - RLTR13A LTR ERVK 0 855 1 2 109 33161 87 9 10 chr9 38010604 38014960 -86061212 - L1Md_F2 LINE L1 -1045 4838 480 2 875 455 176 0 0 chr9 38014960 38015034 -86061138 - L1VL1 LINE L1 -6348 74 1 2 875 253 310 0 0 chr9 38017763 38017850 -86058322 + (CAT)n Simple_repeat Simple_repeat 2 88 0 2 875 3612 62 0 0 chr9 38018131 38018584 -86057588 - L1_Mus1 LINE L1 0 6567 6115 2 875 21 57 0 0 chr9 38019774 38019809 -86056363 + AT_rich Low_complexity Low_complexity 1 35 0 2 875 22 0 0 0 chr9 38019883 38019905 -86056267 + AT_rich Low_complexity Low_complexity 1 22 0 2 875 541 323 77 24 chr9 38020152 38020499 -86055673 - Lx9 LINE L1 -390 7254 6954 2 875 255 315 96 31 chr9 38020563 38020792 -86055380 - Lx9 LINE L1 -792 6852 6609 2 875 957 300 31 62 chr9 38020785 38021403 -86054769 + L1_Rod LINE L1 2956 3554 -2293 2 875 180 200 0 0 chr9 38021550 38021590 -86054582 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3 875 438 281 75 0 chr9 38021658 38021857 -86054315 - Lx7 LINE L1 -279 7417 7204 3 875 315 291 23 8 chr9 38021901 38022029 -86054143 + L1M3 LINE L1 3628 3757 -2383 3 875 303 341 74 54 chr9 38022056 38022298 -86053874 - L1MC3 LINE L1 -188 7597 7351 3 875 288 0 0 0 chr9 38023076 38023108 -86053064 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 3 875 522 31 0 0 chr9 38023110 38023174 -86052998 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 3 875 947 272 31 67 chr9 38023405 38023732 -86052440 - Lx6 LINE L1 -16 7444 7130 3 875 2867 242 59 10 chr9 38023745 38024442 -86051730 + Lx5 LINE L1 6320 7050 0 3 875 200 31 62 0 chr9 38024561 38024593 -86051579 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 875 1052 112 0 0 chr9 38024593 38024736 -86051436 - B1_Mus1 SINE Alu -5 143 1 3 875 29 70 0 0 chr9 38025137 38025194 -86050978 + AT_rich Low_complexity Low_complexity 1 57 0 4 875 21 36 0 0 chr9 38025403 38025431 -86050741 + AT_rich Low_complexity Low_complexity 1 28 0 4 875 790 54 18 0 chr9 38026030 38026142 -86050030 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 4 875 483 284 86 20 chr9 38027693 38027891 -86048281 - B3 SINE B2 -5 211 1 4 875 30167 99 20 18 chr9 38029391 38033107 -86043065 - Lx3_Mus LINE L1 0 7009 3305 4 875 360 0 0 0 chr9 38033107 38033147 -86043025 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 4 875 30167 102 20 23 chr9 38033147 38035306 -86040866 - Lx3_Mus LINE L1 -2582 3304 1144 4 875 1269 159 8 48 chr9 38035307 38035501 -86040671 + MTA_Mm LTR MaLR 1 184 -212 4 875 1094 86 0 0 chr9 38035501 38035652 -86040520 + B2_Mm2 SINE B2 1 151 -44 4 875 369 0 0 0 chr9 38035656 38035697 -86040475 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4 875 1630 56 5 0 chr9 38035697 38035910 -86040262 + MTA_Mm LTR MaLR 183 396 0 4 875 2105 214 42 76 chr9 38035910 38036776 -86039396 - Lx3_Mus LINE L1 -5904 1080 3 4 875 469 216 36 0 chr9 38037313 38037424 -86038748 - Lx6 LINE L1 -1506 5954 5840 5 875 699 344 22 46 chr9 38037454 38038088 -86038084 - Lx6 LINE L1 -747 5133 4515 5 875 800 348 84 20 chr9 38038097 38038537 -86037635 - Lx8 LINE L1 0 7473 7006 5 875 3151 267 50 40 chr9 38038549 38039619 -86036553 - Lx7 LINE L1 -5 7691 6612 5 875 1534 274 55 4 chr9 38039588 38040058 -86036114 - Lx7 LINE L1 -1343 6353 5860 5 875 256 271 31 20 chr9 38040056 38040154 -86036018 - Lx8 LINE L1 -466 7007 6909 5 875 1362 245 33 35 chr9 38040154 38040522 -86035650 + RLTR20C LTR ERVK 1 367 -167 5 875 937 90 44 7 chr9 38040837 38040972 -86035200 - B1_Mus1 SINE Alu -6 142 3 5 875 800 45 8 74 chr9 38041089 38041210 -86034962 - B1_Mus1 SINE Alu -1 147 35 5 875 207 0 0 0 chr9 38041215 38041238 -86034934 + (T)n Simple_repeat Simple_repeat 1 23 0 5 875 3830 203 65 32 chr9 38041726 38042767 -86033405 + MYSERV16_I-int LTR ERVK 2 1382 -1460 5 875 5793 168 46 15 chr9 38042772 38043986 -86032186 + MYSERV16_I-int LTR ERVK 1067 2318 -8 5 875 1435 269 85 32 chr9 38043994 38044501 -86031671 + RLTR20C LTR ERVK 1 534 0 5 875 461 262 179 25 chr9 38044511 38044746 -86031426 + L1M4 LINE L1 4676 4946 -1200 5 875 1703 245 56 2 chr9 38045161 38045554 -86030618 - MTC LTR MaLR -2 419 6 5 875 21 36 0 0 chr9 38046042 38046070 -86030102 + AT_rich Low_complexity Low_complexity 1 28 0 6 875 27 73 0 0 chr9 38046104 38046159 -86030013 + AT_rich Low_complexity Low_complexity 1 55 0 6 875 23 33 0 0 chr9 38046230 38046260 -86029912 + AT_rich Low_complexity Low_complexity 1 30 0 6 875 264 59 0 0 chr9 38046263 38046297 -86029875 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 875 1237 293 38 35 chr9 38046516 38046940 -86029232 + Lx9 LINE L1 6827 7251 -393 6 875 21 36 0 0 chr9 38047101 38047129 -86029043 + AT_rich Low_complexity Low_complexity 1 28 0 6 875 434 187 66 6 chr9 38047275 38047442 -86028730 + (TA)n Simple_repeat Simple_repeat 1 177 0 6 875 21 57 0 0 chr9 38047536 38047571 -86028601 + AT_rich Low_complexity Low_complexity 1 35 0 6 875 3415 55 55 15 chr9 38047654 38048111 -86028061 + MT2C_Mm LTR ERVL 1 475 0 6 875 35292 36 1 1 chr9 38048313 38054163 -86022009 + L1Md_T LINE L1 1 5589 -297 6 875 8945 7 0 0 chr9 38054163 38055159 -86021013 + L1Md_T LINE L1 5590 6585 0 6 875 222 62 0 0 chr9 38055162 38055194 -86020978 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 875 340 266 24 6 chr9 38055264 38055434 -86020738 + GA-rich Low_complexity Low_complexity 1 173 0 7 875 575 269 5 27 chr9 38055493 38055680 -86020492 + L1MC2 LINE L1 5863 6045 -299 7 875 32 0 0 0 chr9 38056471 38056503 -86019669 + AT_rich Low_complexity Low_complexity 1 32 0 7 875 198 71 0 0 chr9 38056745 38056773 -86019399 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 875 333 172 0 0 chr9 38056775 38056839 -86019333 + GA-rich Low_complexity Low_complexity 1 64 0 7 875 222 37 0 0 chr9 38056904 38056931 -86019241 + (A)n Simple_repeat Simple_repeat 1 27 0 7 875 22 0 0 0 chr9 38057048 38057070 -86019102 + AT_rich Low_complexity Low_complexity 1 22 0 7 875 552 30 0 0 chr9 38057288 38057354 -86018818 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 875 288 327 28 125 chr9 38057359 38057646 -86018526 + Lx9 LINE L1 7132 7390 -254 7 875 941 102 0 64 chr9 38058272 38058429 -86017743 + B1_Mm SINE Alu 1 147 0 8 875 904 103 0 20 chr9 38059035 38059184 -86016988 + (TCCC)n Simple_repeat Simple_repeat 3 148 0 8 875 189 0 0 0 chr9 38059185 38059206 -86016966 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 875 33 25 0 0 chr9 38059870 38059910 -86016262 + AT_rich Low_complexity Low_complexity 1 40 0 8 875 858 20 0 0 chr9 38061991 38062091 -86014081 + (TTC)n Simple_repeat Simple_repeat 2 101 0 8 875 24 32 0 0 chr9 38062289 38062320 -86013852 + AT_rich Low_complexity Low_complexity 1 31 0 8 875 464 346 47 28 chr9 38062327 38062538 -86013634 - B3 SINE B2 0 216 2 8 875 2116 209 295 55 chr9 38064265 38064314 -86011858 - L1_Mur3 LINE L1 -553 5327 5294 8 875 4609 128 11 4 chr9 38064314 38065038 -86011134 - Lx3A LINE L1 -11 6970 6242 8 875 2116 209 295 55 chr9 38065038 38065840 -86010332 - L1_Mur3 LINE L1 -587 5293 4259 8 875 2449 72 51 0 chr9 38065840 38066175 -86009997 - L1_Mus1 LINE L1 0 6567 6216 8 875 2116 209 295 55 chr9 38066175 38066350 -86009822 - L1_Mur3 LINE L1 -1622 4258 4054 8 875 4102 203 21 122 chr9 38066809 38067378 -86008794 - L1_Mur3 LINE L1 -1818 4062 3491 8 875 1079 101 0 0 chr9 38067378 38067526 -86008646 + B1_Mus1 SINE Alu 1 148 0 9 875 4102 203 21 122 chr9 38067526 38068255 -86007917 - L1_Mur3 LINE L1 -2390 3490 2896 8 875 4740 261 86 26 chr9 38068262 38069745 -86006427 - Lx7 LINE L1 -263 7433 5861 9 875 577 236 104 14 chr9 38069847 38070058 -86006114 + L1M4 LINE L1 4683 4912 -1234 9 875 1050 169 0 3 chr9 38071159 38071496 -86004676 + (TA)n Simple_repeat Simple_repeat 1 335 0 9 875 195 100 0 0 chr9 38071511 38071541 -86004631 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 875 219 167 0 0 chr9 38071666 38071708 -86004464 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 9 875 2722 196 40 64 chr9 38071930 38072637 -86003535 + RMER6C LTR ERVK 1 690 0 9 875 21 57 0 0 chr9 38072671 38072706 -86003466 + AT_rich Low_complexity Low_complexity 1 35 0 9 875 22 35 0 0 chr9 38072792 38072821 -86003351 + AT_rich Low_complexity Low_complexity 1 29 0 9 875 30 27 0 0 chr9 38073014 38073051 -86003121 + AT_rich Low_complexity Low_complexity 1 37 0 9 875 313 313 73 143 chr9 38073058 38073457 -86002715 + ORR1D1 LTR MaLR 1 371 -3 1 875 309 324 200 24 chr9 38073472 38073842 -86002330 + L1MC LINE L1 4458 4892 -1254 1 875 423 0 0 0 chr9 38074128 38074175 -86001997 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 875 531 335 39 19 chr9 38077363 38077570 -85998602 - B3 SINE B2 0 216 6 1 875 24 0 0 0 chr9 38078094 38078118 -85998054 + AT_rich Low_complexity Low_complexity 1 24 0 1 875 2197 11 114 0 chr9 38078490 38078752 -85997420 - RLTR10B LTR ERVK 0 292 1 1 875 10086 41 0 16 chr9 38078880 38080818 -85995354 - L1Md_F2 LINE L1 -12 6570 4672 1 875 8165 40 1 5 chr9 38080816 38081846 -85994326 + L1Md_F2 LINE L1 3621 4646 -1237 1 875 1191 312 92 21 chr9 38082693 38083443 -85992729 - Lx8 LINE L1 -441 7032 6230 1 875 22 0 0 0 chr9 38083517 38083539 -85992633 + AT_rich Low_complexity Low_complexity 1 22 0 1 875 254 220 95 42 chr9 38083662 38083757 -85992415 + Lx9 LINE L1 7055 7154 -490 1 875 210 71 0 0 chr9 38083785 38083813 -85992359 + (CAT)n Simple_repeat Simple_repeat 3 30 0 1 875 784 206 16 22 chr9 38083820 38084004 -85992168 - L1_Mur3 LINE L1 -3933 1947 1765 1 875 609 202 119 0 chr9 38083993 38084185 -85991987 + L1_Mur3 LINE L1 3488 3729 -2157 1 875 241 321 60 15 chr9 38084457 38084590 -85991582 + RMER5 LTR ERV1 33 171 -363 1 875 3526 194 59 4 chr9 38084755 38085529 -85990643 + Lx2B LINE L1 6017 6709 -291 1 875 192 40 0 0 chr9 38085529 38085554 -85990618 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 875 1725 261 153 4 chr9 38085554 38085674 -85990498 + Lx2B LINE L1 6519 6653 -1 1 875 485 288 71 47 chr9 38085704 38085958 -85990214 - ORR1D1 LTR MaLR -4 370 85 1 875 30580 101 13 22 chr9 38085959 38091350 -85984822 + L1Md_F2 LINE L1 277 5586 -297 1 875 7030 86 3 19 chr9 38091351 38092350 -85983822 + L1Md_F2 LINE L1 5588 6570 -12 1 875 10209 90 20 3 chr9 38092350 38094447 -85981725 + L1Md_F2 LINE L1 4429 6559 -23 1 875 378 0 0 0 chr9 38094447 38094489 -85981683 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1 875 478 308 8 8 chr9 38094527 38094661 -85981511 - ORR1D1 LTR MaLR -236 134 1 1 875 462 343 60 77 chr9 38094661 38094959 -85981213 - MTE2a LTR MaLR -95 324 20 1 875 213 132 0 0 chr9 38095930 38095968 -85980204 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 875 4152 79 2 0 chr9 38095977 38096524 -85979648 - L1_Mus1 LINE L1 0 6567 6020 1 875 255 315 0 0 chr9 38096991 38097080 -85979092 - Lx7 LINE L1 -21 7675 7587 1 875 1296 149 36 36 chr9 38097103 38097354 -85978818 + Lx LINE L1 6402 6652 -2 1 875 1787 217 161 0 chr9 38097380 38097827 -85978345 + Lx5 LINE L1 5743 6261 -789 1 875 1412 220 101 46 chr9 38097827 38098222 -85977950 + RLTR11A LTR ERVK 1 417 -111 1 875 1017 67 0 0 chr9 38101160 38101294 -85974878 + (TCTCCC)n Simple_repeat Simple_repeat 3 136 0 1 875 694 310 25 41 chr9 38102128 38102370 -85973802 + Lx8 LINE L1 7149 7386 -87 1 875 283 290 68 52 chr9 38102581 38102832 -85973340 + L1MC LINE L1 5412 5666 -2119 1 875 264 274 58 108 chr9 38102954 38103093 -85973079 + MER20 DNA MER1_type 40 171 -48 1 875 192 291 38 12 chr9 38103171 38103251 -85972921 - MIRc SINE MIR -17 251 170 1 875 25 0 0 0 chr9 38103259 38103284 -85972888 + AT_rich Low_complexity Low_complexity 1 25 0 1 875 7944 40 1 6 chr9 38103622 38105060 -85971112 - L1Md_F2 LINE L1 -2 6580 5154 1 875 951 136 63 69 chr9 38105095 38105284 -85970888 + MT2C_Mm LTR ERVL 4 191 -284 1 875 1409 199 9 55 chr9 38105313 38105659 -85970513 + MERVL_2A-int LTR ERVL 1 330 -5155 1 875 6355 10 0 0 chr9 38105662 38106378 -85969794 + L1Md_A LINE L1 4871 5586 -297 1 875 8583 21 3 0 chr9 38106378 38107371 -85968801 + L1Md_A LINE L1 5587 6582 0 1 875 23326 146 27 23 chr9 38107375 38107711 -85968461 + MERVL_2A-int LTR ERVL 405 775 -4986 1 875 3671 36 13 0 chr9 38107711 38108159 -85968013 + L1Md_F3 LINE L1 6130 6583 -1 1 875 23326 146 27 23 chr9 38108159 38108622 -85967550 + MERVL_2A-int LTR ERVL 776 1182 -4579 1 875 923 0 9 0 chr9 38108622 38108729 -85967443 + (GAAAA)n Simple_repeat Simple_repeat 4 111 0 1 875 23326 146 27 23 chr9 38108729 38110170 -85966002 + MERVL_2A-int LTR ERVL 1183 2662 -3099 1 875 6376 91 94 5 chr9 38110170 38111110 -85965062 + RLTR13D5 LTR ERVK 1 1023 0 1 875 23326 126 14 5 chr9 38111110 38113253 -85962919 + MERVL_2A-int LTR ERVL 2556 4722 -763 1 875 4897 136 52 6 chr9 38113253 38114103 -85962069 + RMER17D LTR ERVK 1 889 0 1 875 18591 126 14 5 chr9 38114103 38114731 -85961441 + MERVL_2A-int LTR ERVL 4723 5352 -133 1 875 662 184 47 1 chr9 38114823 38114975 -85961197 + MERVL_2A-int LTR ERVL 5352 5480 -5 1 875 2796 158 136 4 chr9 38114978 38115494 -85960678 + MT2B2 LTR ERVL 1 584 0 1 875 23 0 0 0 chr9 38115908 38115931 -85960241 + AT_rich Low_complexity Low_complexity 1 23 0 1 875 522 79 0 0 chr9 38118050 38118126 -85958046 + (TATG)n Simple_repeat Simple_repeat 1 76 0 1 875 743 302 0 24 chr9 38118227 38118434 -85957738 + B3 SINE B2 1 202 -14 1 875 257 345 145 25 chr9 38119100 38119117 -85957055 - RMER15 LTR ERVL -14 561 535 1 875 381 93 0 0 chr9 38119117 38119171 -85957001 + (TAA)n Simple_repeat Simple_repeat 2 55 0 1 875 257 345 145 25 chr9 38119171 38119388 -85956784 - RMER15 LTR ERVL -41 534 300 1 875 627 188 0 33 chr9 38119998 38120119 -85956053 - B1_Mus1 SINE Alu -22 126 10 1 875 337 226 17 117 chr9 38120024 38120144 -85956028 - MT2B LTR ERVL -344 257 150 1 875 2953 76 23 0 chr9 38120170 38120564 -85955608 + L1_Mus2 LINE L1 6164 6566 0 1 875 456 19 0 0 chr9 38120606 38120659 -85955513 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 875 3047 26 80 21 chr9 38121082 38121470 -85954702 - IAPLTR2a LTR ERVK 0 411 1 1 875 13939 67 8 6 chr9 38121472 38123270 -85952902 - IAPEz-int LTR ERVK -2 6479 4678 1 875 1901 75 0 0 chr9 38123288 38123528 -85952644 - IAPEY3-int LTR ERVK -5183 2497 2258 1 875 380 105 0 0 chr9 38123533 38123590 -85952582 - B1_Mur4 SINE Alu -93 57 1 1 875 5059 86 64 56 chr9 38123590 38124809 -85951363 - IAPEz-int LTR ERVK -5486 995 9 1 875 3021 26 80 21 chr9 38124810 38125196 -85950976 - IAPLTR2a LTR ERVK 0 411 3 1 875 594 41 0 0 chr9 38125197 38125270 -85950902 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 875 700 270 285 4 chr9 38125299 38125548 -85950624 - MT2A LTR ERVL -91 442 124 1 875 228 274 0 61 chr9 38125590 38125656 -85950516 - MT2A LTR ERVL -407 126 65 1 875 280 295 0 83 chr9 38125948 38126044 -85950128 + RSINE1 SINE B4 78 165 0 1 875 552 330 42 32 chr9 38126432 38126742 -85949430 + Lx8 LINE L1 7150 7462 -11 1 875 227 344 11 32 chr9 38127155 38127248 -85948924 - LTR48 LTR ERV1 -693 94 4 1 875 244 283 76 84 chr9 38127264 38127395 -85948777 + MER20 DNA MER1_type 42 171 -48 1 875 29 78 0 0 chr9 38127514 38127578 -85948594 + AT_rich Low_complexity Low_complexity 1 64 0 1 875 6977 138 16 12 chr9 38127584 38129568 -85946604 - L1_Mus3 LINE L1 0 6638 4644 1 875 9952 81 2 0 chr9 38129562 38130940 -85945232 - L1_Mm LINE L1 -2612 3271 1891 1 875 17658 157 11 52 chr9 38130934 38133689 -85942483 - L1_Mus3 LINE L1 -1230 4653 2051 1 875 351 0 0 0 chr9 38133689 38133728 -85942444 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 875 17658 160 18 62 chr9 38133728 38134794 -85941378 - L1_Mus3 LINE L1 -3833 2050 982 1 875 189 0 0 0 chr9 38134794 38134815 -85941357 + (ATG)n Simple_repeat Simple_repeat 3 23 0 1 875 2985 173 46 100 chr9 38134815 38135229 -85940943 - L1_Mus3 LINE L1 -5676 981 609 1 875 3327 142 55 2 chr9 38135278 38135842 -85940330 - Lx2 LINE L1 -20 6977 6384 1 875 435 267 20 10 chr9 38139109 38139211 -85936961 + B3A SINE B2 1 103 -95 1 875 343 391 85 12 chr9 38139815 38140061 -85936111 - RMER15 LTR ERVL -13 562 299 1 875 27 29 0 0 chr9 38140753 38140787 -85935385 + AT_rich Low_complexity Low_complexity 1 34 0 1 876 241 360 9 0 chr9 38142424 38142535 -85933637 + CT-rich Low_complexity Low_complexity 3 114 0 1 876 181 196 77 19 chr9 38142851 38142903 -85933269 + L3 LINE CR1 4267 4321 -168 1 876 22 0 0 0 chr9 38143517 38143539 -85932633 + AT_rich Low_complexity Low_complexity 1 22 0 1 876 351 0 0 0 chr9 38143871 38143910 -85932262 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 876 240 35 0 0 chr9 38143922 38143951 -85932221 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 876 501 17 0 0 chr9 38143951 38144008 -85932164 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 876 303 291 80 73 chr9 38144012 38144149 -85932023 + B1F1 SINE Alu 10 147 -2 1 876 222 37 0 0 chr9 38144337 38144364 -85931808 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1 876 2809 142 12 27 chr9 38144443 38144926 -85931246 + Lx LINE L1 6174 6649 -5 1 876 888 325 28 12 chr9 38145011 38145338 -85930834 - Lx8 LINE L1 -901 6572 6241 1 876 238 267 75 22 chr9 38145694 38145965 -85930207 + L1MC2 LINE L1 5198 5482 -962 1 876 582 269 88 9 chr9 38146252 38146545 -85929627 + L1MC2 LINE L1 5594 5907 -1878 1 876 726 268 98 4 chr9 38146583 38146819 -85929353 - Lx9 LINE L1 -796 6848 6591 1 876 234 167 0 0 chr9 38146810 38146846 -85929326 + Lx9 LINE L1 6412 6447 -1197 1 876 7941 52 3 8 chr9 38146846 38147847 -85928325 - L1Md_F2 LINE L1 0 6582 5587 1 876 225 0 0 0 chr9 38147852 38147877 -85928295 + (T)n Simple_repeat Simple_repeat 1 25 0 1 876 1036 72 0 0 chr9 38147880 38148018 -85928154 - B1_Mus1 SINE Alu 0 148 11 1 876 595 212 25 50 chr9 38148018 38148036 -85928136 - ID_B1 SINE B4 0 221 70 1 876 415 309 30 20 chr9 38148279 38148477 -85927695 + Lx9 LINE L1 7178 7377 -267 1 876 303 331 16 8 chr9 38148799 38148921 -85927251 - Lx8 LINE L1 -299 7174 7052 1 876 2265 209 14 109 chr9 38148917 38149630 -85926542 + L1_Mur3 LINE L1 1836 2480 -3400 1 876 1135 166 10 0 chr9 38149631 38149824 -85926348 + L1_Mm LINE L1 5449 5643 -240 1 876 2785 128 43 0 chr9 38149824 38150261 -85925911 + Lx LINE L1 6194 6649 -5 1 876 994 186 53 98 chr9 38150265 38150623 -85925549 + L1_Mur3 LINE L1 2994 3335 -2545 1 876 3266 163 21 5 chr9 38150650 38150700 -85925472 + Lx3C LINE L1 5312 5366 -520 1 876 4525 129 14 11 chr9 38150700 38151420 -85924752 + Lx LINE L1 5933 6654 0 1 876 6871 176 43 4 chr9 38151420 38152958 -85923214 + Lx3C LINE L1 5367 6974 -2 1 876 3316 148 24 5 chr9 38152968 38153557 -85922615 - Lx2B LINE L1 -809 6191 5592 1 876 1447 220 25 25 chr9 38153537 38154002 -85922170 + Lx2B LINE L1 6504 7054 -4 1 876 2050 277 46 8 chr9 38154039 38154628 -85921544 + Lx6 LINE L1 6809 7419 -41 1 876 23 33 0 0 chr9 38154825 38154855 -85921317 + AT_rich Low_complexity Low_complexity 1 30 0 1 876 570 29 0 0 chr9 38154945 38155013 -85921159 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 876 802 128 6 19 chr9 38157975 38158078 -85918094 + polypyrimidine Low_complexity Low_complexity 58 159 0 1 876 1127 82 0 0 chr9 38158078 38158224 -85917948 - B1_Mus2 SINE Alu 0 147 2 1 876 1021 112 12 12 chr9 38158224 38158396 -85917776 + (TTTC)n Simple_repeat Simple_repeat 4 175 0 1 876 802 128 6 19 chr9 38158396 38158450 -85917722 + polypyrimidine Low_complexity Low_complexity 4 57 0 2 876 2354 106 11 36 chr9 38159025 38159388 -85916784 - IAPEY2_LTR LTR ERVK -3 354 1 2 876 437 343 48 36 chr9 38159978 38160229 -85915943 - RMER15 LTR ERVL -9 566 313 2 876 4653 155 59 12 chr9 38160644 38161469 -85914703 + Lx2 LINE L1 6134 6997 0 2 876 1638 111 0 53 chr9 38161796 38162081 -85914091 - L1Md_F2 LINE L1 0 6582 6313 2 876 2146 53 0 0 chr9 38162081 38162344 -85913828 - L1Md_F2 LINE L1 -377 6205 5943 2 876 574 381 28 21 chr9 38162366 38162650 -85913522 - B4A SINE B4 -3 289 4 2 876 21 36 0 0 chr9 38163066 38163094 -85913078 + AT_rich Low_complexity Low_complexity 1 28 0 2 876 208 150 25 0 chr9 38163240 38163280 -85912892 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 876 409 62 31 0 chr9 38163280 38163345 -85912827 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2 876 2254 243 68 34 chr9 38163346 38164079 -85912093 - Lx9 LINE L1 -190 7454 6697 2 876 1317 212 55 37 chr9 38164105 38164453 -85911719 + RLTR10D LTR ERVK 1 354 -5 2 876 1122 317 13 13 chr9 38164453 38164833 -85911339 - Lx9 LINE L1 -959 6685 6306 2 876 3432 232 90 7 chr9 38165051 38165904 -85910268 - Lx6 LINE L1 -6 7454 6531 2 876 2908 222 45 61 chr9 38165969 38166157 -85910015 + Lx6 LINE L1 5043 5230 -650 2 876 444 51 0 0 chr9 38166157 38166216 -85909956 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 876 2908 236 63 46 chr9 38166216 38167212 -85908960 + Lx6 LINE L1 5231 6241 -1219 2 876 610 201 91 40 chr9 38167400 38167576 -85908596 - RMER19C LTR ERVK -426 185 1 2 876 264 292 0 37 chr9 38167579 38167714 -85908458 + L1M1 LINE L1 5745 5874 -426 2 876 27 73 0 0 chr9 38167812 38167867 -85908305 + AT_rich Low_complexity Low_complexity 1 55 0 2 876 1558 120 4 31 chr9 38168157 38168220 -85907952 - L1VL2 LINE L1 -268 5615 5556 2 876 2881 38 3 3 chr9 38168220 38168566 -85907606 - ORR1A0 LTR MaLR 0 346 1 2 876 1558 120 4 31 chr9 38168566 38168759 -85907413 - L1VL2 LINE L1 -328 5555 5366 2 876 18709 166 16 11 chr9 38168756 38168795 -85907377 - L1VL2 LINE L1 -1062 4821 4782 2 876 2131 67 3 3 chr9 38168795 38169081 -85907091 - L1Md_F3 LINE L1 -1 6583 6298 2 876 18709 158 23 11 chr9 38169081 38173300 -85902872 - L1VL2 LINE L1 -1102 4781 513 2 876 332 279 57 8 chr9 38173309 38173432 -85902740 - L1M4 LINE L1 -743 5431 5303 2 876 422 302 93 31 chr9 38173560 38173825 -85902347 - L1M2 LINE L1 -881 5262 4971 2 876 309 26 0 0 chr9 38173825 38173863 -85902309 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 876 422 302 93 31 chr9 38173863 38173952 -85902220 - L1M2 LINE L1 -1173 4970 4887 2 876 273 167 0 0 chr9 38176419 38176473 -85899699 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 876 1755 316 87 23 chr9 38176487 38177414 -85898758 - Lx9 LINE L1 -44 7600 6614 2 876 499 308 64 0 chr9 38177397 38177569 -85898603 + Lx9 LINE L1 6379 6561 -1083 2 876 300 179 148 37 chr9 38177725 38177737 -85898435 - B1_Mur4 SINE Alu 0 150 139 2 876 243 0 0 0 chr9 38177737 38177764 -85898408 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 876 300 179 148 37 chr9 38177764 38177832 -85898340 - B1_Mur4 SINE Alu -12 138 61 2 876 2831 60 3 3 chr9 38177806 38178176 -85897996 + MTA_Mm LTR MaLR 27 396 0 2 876 31 58 0 0 chr9 38178180 38178232 -85897940 + AT_rich Low_complexity Low_complexity 1 52 0 2 876 192 97 0 0 chr9 38179215 38179246 -85896926 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 2 876 389 298 56 21 chr9 38179386 38179530 -85896642 - Lx5 LINE L1 -421 6629 6481 2 876 407 229 56 19 chr9 38180280 38180387 -85895785 - RLTR22_Mus LTR ERVK -158 1650 1540 2 876 1568 197 62 19 chr9 38180412 38180784 -85895388 - RLTR22_Mur LTR ERVK -1051 797 410 2 876 440 202 28 37 chr9 38180831 38180939 -85895233 + RLTR23 LTR ERV1 324 430 0 2 876 1173 333 65 14 chr9 38181048 38181621 -85894551 - Lx8 LINE L1 -299 7174 6573 2 876 5814 247 71 18 chr9 38181645 38183283 -85892889 + Lx6 LINE L1 5500 7262 -198 2 876 231 36 0 0 chr9 38183283 38183311 -85892861 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 876 5814 256 92 18 chr9 38183311 38183488 -85892684 + Lx6 LINE L1 7263 7445 -15 2 876 230 262 0 0 chr9 38186459 38186520 -85889652 + T-rich Low_complexity Low_complexity 1 61 0 2 876 451 353 22 18 chr9 38187901 38188123 -85888049 - RMER15 LTR ERVL -9 566 344 2 876 24 0 0 0 chr9 38188461 38188485 -85887687 + AT_rich Low_complexity Low_complexity 1 24 0 2 876 25 31 0 0 chr9 38188515 38188547 -85887625 + AT_rich Low_complexity Low_complexity 1 32 0 2 876 536 353 49 23 chr9 38188889 38189153 -85887019 - B4A SINE B4 -2 290 20 2 876 32 26 0 0 chr9 38189153 38189192 -85886980 + AT_rich Low_complexity Low_complexity 1 39 0 2 876 6996 107 9 1 chr9 38189193 38190819 -85885353 - L1_Mus2 LINE L1 0 6566 4924 2 876 32003 91 6 9 chr9 38190828 38195234 -85880938 + L1_Mus2 LINE L1 441 4838 -1045 2 876 1834 174 3 3 chr9 38195234 38195545 -85880627 - RLTR10E LTR ERVK 0 311 1 2 876 32003 73 5 5 chr9 38195545 38196299 -85879873 + L1Md_F2 LINE L1 4839 5585 -298 2 876 7722 57 4 0 chr9 38196300 38197273 -85878899 + L1Md_F2 LINE L1 5587 6563 -19 2 876 281 26 26 0 chr9 38197281 38197319 -85878853 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 876 11253 132 21 6 chr9 38197320 38199190 -85876982 - L1Md_F LINE L1 -945 4938 3040 2 876 3367 179 19 52 chr9 38199187 38200429 -85875743 - L1Md_F LINE L1 -2264 1650 385 2 876 1400 237 84 45 chr9 38200450 38200988 -85875184 - L1Md_F LINE L1 -5653 866 308 2 876 31 0 0 0 chr9 38201093 38201124 -85875048 + AT_rich Low_complexity Low_complexity 1 31 0 2 876 596 288 150 31 chr9 38201451 38201579 -85874593 - Lx9 LINE L1 -3 7641 7486 2 876 486 11 78 22 chr9 38201579 38201669 -85874503 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 2 876 596 288 150 31 chr9 38201669 38202021 -85874151 - Lx9 LINE L1 -159 7485 7104 2 876 4423 131 41 11 chr9 38202049 38202780 -85873392 - Lx LINE L1 -3 6651 5899 2 876 353 191 0 110 chr9 38202791 38202891 -85873281 - Lx9 LINE L1 -531 7113 7025 2 876 4020 103 28 50 chr9 38202927 38203680 -85872492 - RMER17A LTR ERVK -15 736 1 2 876 1939 268 32 85 chr9 38203681 38204395 -85871777 - Lx9 LINE L1 -611 7033 6358 2 876 997 124 6 11 chr9 38204406 38204586 -85871586 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 876 2240 238 57 7 chr9 38204652 38205218 -85870954 - Lx6 LINE L1 -344 7116 6523 2 876 3383 199 45 23 chr9 38205270 38205513 -85870659 + Lx6 LINE L1 5037 5291 -589 2 876 2417 44 3 0 chr9 38205513 38205809 -85870363 + L1Md_T LINE L1 6285 6581 -1 2 876 3383 224 62 21 chr9 38205809 38206744 -85869428 + Lx6 LINE L1 5292 6280 -1180 2 876 405 0 0 0 chr9 38207782 38207827 -85868345 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 876 43 47 0 0 chr9 38208088 38208152 -85868020 + AT_rich Low_complexity Low_complexity 1 64 0 2 876 25 31 0 0 chr9 38208937 38208969 -85867203 + AT_rich Low_complexity Low_complexity 1 32 0 2 876 21 36 0 0 chr9 38209947 38209975 -85866197 + AT_rich Low_complexity Low_complexity 1 28 0 2 876 29 47 0 0 chr9 38211868 38211911 -85864261 + AT_rich Low_complexity Low_complexity 1 43 0 2 876 33 43 0 0 chr9 38212185 38212232 -85863940 + AT_rich Low_complexity Low_complexity 1 47 0 2 876 24 53 0 0 chr9 38212244 38212282 -85863890 + AT_rich Low_complexity Low_complexity 1 38 0 2 876 318 349 45 62 chr9 38212372 38212549 -85863623 - B4 SINE B4 -113 179 6 2 876 4573 184 78 56 chr9 38212588 38212647 -85863525 + ETnERV3-int LTR ERVK 2800 2860 -2546 2 876 270 0 0 0 chr9 38212647 38212677 -85863495 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 876 357 24 0 0 chr9 38212677 38212718 -85863454 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 876 4573 184 78 56 chr9 38212718 38213145 -85863027 + ETnERV3-int LTR ERVK 2861 3295 -2111 2 876 303 28 0 0 chr9 38213145 38213181 -85862991 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2 876 5336 166 29 44 chr9 38213181 38214560 -85861612 + ETnERV3-int LTR ERVK 3296 5376 -432 2 876 1719 117 0 4 chr9 38214561 38214811 -85861361 + ETnERV3-int LTR ERVK 5529 5777 -31 2 876 5556 94 58 30 chr9 38214829 38215706 -85860466 + RLTR13D6 LTR ERVK 1 902 0 2 876 235 238 62 0 chr9 38216305 38216385 -85859787 - L1MC2 LINE L1 -102 6242 6158 2 876 321 162 0 0 chr9 38216421 38216489 -85859683 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 2 876 25 31 0 0 chr9 38216617 38216649 -85859523 + AT_rich Low_complexity Low_complexity 1 32 0 2 876 258 75 25 0 chr9 38217238 38217278 -85858894 + RLTRETN_Mm LTR ERVK 1 41 -281 2 876 552 181 0 28 chr9 38217276 38217384 -85858788 + RLTRETN_Mm LTR ERVK 218 322 0 2 876 10988 144 56 51 chr9 38217388 38220672 -85855500 + MMETn-int LTR ERVK 3 3402 -2004 2 876 2918 72 27 0 chr9 38220672 38221047 -85855125 + IAPEY_LTR LTR ERVK 1 385 0 2 876 1751 93 58 107 chr9 38221047 38221373 -85854799 + IAPEy-int LTR ERVK 1 310 -7203 2 876 3762 121 13 16 chr9 38221762 38222390 -85853782 + IAPEy-int LTR ERVK 433 1058 -6455 2 876 20830 67 3 6 chr9 38222390 38225109 -85851063 + IAPEy-int LTR ERVK 4804 7513 0 2 876 2950 61 24 0 chr9 38225109 38225485 -85850687 + IAPEY_LTR LTR ERVK 1 385 0 2 876 1309 65 0 70 chr9 38225485 38225680 -85850492 + MMETn-int LTR ERVK 2956 3137 -1707 2 876 6140 132 23 4 chr9 38225781 38226686 -85849486 + ETnERV2-int LTR ERVK 6222 7143 -263 2 876 348 233 288 52 chr9 38226687 38227025 -85849147 + RLTR13B1 LTR ERVK 93 531 -371 2 876 470 138 0 36 chr9 38227025 38227108 -85849064 + ETnERV2-int LTR ERVK 7324 7403 -3 2 876 1108 186 28 126 chr9 38227110 38227467 -85848705 + RLTRETN_Mm LTR ERVK 1 322 0 2 876 26 82 0 0 chr9 38227491 38227552 -85848620 + AT_rich Low_complexity Low_complexity 1 61 0 2 876 340 273 51 13 chr9 38227552 38227708 -85848464 - L1MA4 LINE L1 -362 5938 5777 2 876 1474 213 18 35 chr9 38228296 38228636 -85847536 + RLTR28 LTR ERVL 191 524 0 2 876 443 256 50 14 chr9 38228636 38228775 -85847397 - Lx7 LINE L1 -1130 6566 6423 2 876 638 278 51 46 chr9 38228959 38229155 -85847017 + Lx7 LINE L1 6959 7155 -541 2 876 586 320 29 90 chr9 38229217 38229495 -85846677 + RLTR9A LTR ERVK 108 368 0 2 876 228 35 0 0 chr9 38229794 38229823 -85846349 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 2 876 4837 180 48 54 chr9 38229883 38231021 -85845151 + ETnERV2-int LTR ERVK 1060 2191 -5215 2 876 11374 171 71 39 chr9 38231100 38232939 -85843233 + RMER16-int LTR ERVK 1431 3920 -3486 2 876 198 0 0 0 chr9 38232939 38232961 -85843211 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 876 11374 166 77 29 chr9 38232961 38234131 -85842041 + RMER16-int LTR ERVK 2864 3866 -1540 2 876 448 262 126 17 chr9 38234840 38235015 -85841157 + Lx7 LINE L1 7170 7363 -333 2 876 333 0 0 0 chr9 38235063 38235100 -85841072 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 876 396 0 0 0 chr9 38235100 38235143 -85841029 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 876 706 317 65 38 chr9 38235288 38235883 -85840289 + L1MA6 LINE L1 5300 5894 -406 2 876 1148 51 0 0 chr9 38236116 38236254 -85839918 + B1_Mus1 SINE Alu 1 138 -10 2 876 267 54 0 0 chr9 38236254 38236291 -85839881 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 876 519 345 33 78 chr9 38236308 38236641 -85839531 - ORR1E LTR MaLR -38 321 4 2 876 22 56 0 0 chr9 38236664 38236700 -85839472 + AT_rich Low_complexity Low_complexity 1 36 0 2 876 451 327 52 0 chr9 38237507 38237660 -85838512 - RSINE1 SINE B4 -2 163 3 2 876 49 52 0 0 chr9 38238975 38239052 -85837120 + AT_rich Low_complexity Low_complexity 1 77 0 2 876 1114 75 7 0 chr9 38239390 38239537 -85836635 - B1_Mus1 SINE Alu 0 148 1 2 876 662 150 0 0 chr9 38239869 38239969 -85836203 - Lx3A LINE L1 -704 6277 6178 2 876 243 355 85 16 chr9 38240420 38240609 -85835563 + Kanga1c DNA Tc2 4 205 -524 2 876 527 204 10 0 chr9 38240722 38240820 -85835352 + B1_Mur3 SINE Alu 1 99 -50 2 876 411 207 20 20 chr9 38240825 38240973 -85835199 + (TA)n Simple_repeat Simple_repeat 1 148 0 2 876 1034 218 102 47 chr9 38240982 38241159 -85835013 + Lx9 LINE L1 7234 7398 -246 3 876 3543 167 173 44 chr9 38241159 38241961 -85834211 - RMER13B LTR ERVK -2 906 1 3 876 1034 218 102 47 chr9 38241961 38242164 -85834008 + Lx9 LINE L1 7399 7635 -9 3 876 746 312 5 5 chr9 38242185 38242394 -85833778 + B3 SINE B2 8 216 0 3 876 25 31 0 0 chr9 38242596 38242628 -85833544 + AT_rich Low_complexity Low_complexity 1 32 0 3 876 283 319 33 0 chr9 38242636 38242727 -85833445 + Kanga1c DNA Tc2 396 488 -241 2 876 23 33 0 0 chr9 38243012 38243042 -85833130 + AT_rich Low_complexity Low_complexity 1 30 0 3 876 554 363 27 51 chr9 38243324 38243620 -85832552 + MLT1B LTR MaLR 76 364 -26 3 876 21 36 0 0 chr9 38243791 38243819 -85832353 + AT_rich Low_complexity Low_complexity 1 28 0 3 876 21 0 0 0 chr9 38244067 38244088 -85832084 + AT_rich Low_complexity Low_complexity 1 21 0 3 876 243 0 0 0 chr9 38244275 38244302 -85831870 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 876 29 28 0 0 chr9 38244582 38244618 -85831554 + AT_rich Low_complexity Low_complexity 1 36 0 3 876 441 266 209 34 chr9 38244766 38244914 -85831258 + B3A SINE B2 5 178 -20 3 876 412 181 110 17 chr9 38244948 38245066 -85831106 + Lx9 LINE L1 7511 7639 -5 3 876 794 296 24 20 chr9 38245231 38245483 -85830689 - MTD LTR MaLR -166 253 1 3 876 888 334 81 0 chr9 38245512 38245856 -85830316 - MTEa LTR MaLR -5 374 3 3 876 17255 78 1 2 chr9 38246560 38249599 -85826573 - L1Md_F2 LINE L1 -2 6580 3542 3 876 23 54 0 0 chr9 38249660 38249697 -85826475 + AT_rich Low_complexity Low_complexity 1 37 0 3 876 33 43 0 0 chr9 38249757 38249804 -85826368 + AT_rich Low_complexity Low_complexity 1 47 0 3 876 414 0 0 0 chr9 38249807 38249853 -85826319 + (TAG)n Simple_repeat Simple_repeat 1 46 0 3 876 655 265 0 0 chr9 38249860 38250007 -85826165 - B1_Mus1 SINE Alu -1 147 1 3 876 257 91 0 43 chr9 38250657 38250676 -85825496 + (TTTTC)n Simple_repeat Simple_repeat 4 21 0 3 876 1107 119 0 0 chr9 38250676 38250852 -85825320 + (TCTCC)n Simple_repeat Simple_repeat 5 180 0 3 876 257 91 0 43 chr9 38250852 38250878 -85825294 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 3 876 3650 133 49 13 chr9 38250879 38251495 -85824677 - Lx LINE L1 -1 6653 6016 3 876 3736 153 23 3 chr9 38251495 38252301 -85823871 + Lx LINE L1 5190 6018 -636 3 876 834 250 121 3 chr9 38252342 38252647 -85823525 - Lx9 LINE L1 -3 7641 7301 3 876 550 65 22 0 chr9 38252673 38252765 -85823407 + (TTTTG)n Simple_repeat Simple_repeat 2 95 0 3 876 2053 256 18 6 chr9 38252771 38253286 -85822886 - Lx9 LINE L1 -387 7257 6737 3 876 324 48 0 0 chr9 38254089 38254131 -85822041 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 876 432 67 0 0 chr9 38254886 38254946 -85821226 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 876 909 312 23 3 chr9 38255487 38255789 -85820383 + Lx6 LINE L1 7151 7458 -2 3 876 847 154 12 0 chr9 38255808 38255977 -85820195 + GA-rich Low_complexity Low_complexity 2 172 0 3 876 785 238 92 40 chr9 38257688 38258043 -85818129 - MTD LTR MaLR -11 408 1 3 876 423 0 0 0 chr9 38258163 38258210 -85817962 + (TAA)n Simple_repeat Simple_repeat 3 49 0 3 876 25 0 0 0 chr9 38258230 38258255 -85817917 + AT_rich Low_complexity Low_complexity 1 25 0 3 876 234 347 83 97 chr9 38258387 38258604 -85817568 - B4 SINE B4 -36 256 43 3 876 1690 81 8 4 chr9 38258610 38258846 -85817326 + L1_Mus3 LINE L1 6371 6607 -31 3 876 442 0 17 17 chr9 38258846 38258905 -85817267 + (TAA)n Simple_repeat Simple_repeat 2 60 0 3 876 258 311 48 16 chr9 38259020 38259144 -85817028 - RCHARR1 DNA MER1_type -186 788 661 3 876 511 252 6 47 chr9 38259262 38259433 -85816739 - L1_Mur2 LINE L1 -1269 4608 4445 3 876 25 83 0 0 chr9 38259637 38259697 -85816475 + AT_rich Low_complexity Low_complexity 1 60 0 3 876 663 304 20 57 chr9 38259704 38259842 -85816330 - Lx9 LINE L1 -1 7643 7513 3 876 1144 70 0 0 chr9 38259842 38259984 -85816188 - B1_Mm SINE Alu -5 142 1 3 876 663 304 20 57 chr9 38259984 38260247 -85815925 - Lx9 LINE L1 -132 7512 7257 3 876 203 267 0 0 chr9 38260878 38260938 -85815234 + T-rich Low_complexity Low_complexity 1 60 0 3 876 7447 105 65 0 chr9 38260941 38261858 -85814314 - Lx3_Mus LINE L1 -8 7001 6062 3 876 486 33 0 0 chr9 38261858 38261918 -85814254 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 3 876 7447 105 65 0 chr9 38261918 38262127 -85814045 - Lx3_Mus LINE L1 -948 6061 5804 3 876 4494 100 11 3 chr9 38262128 38262771 -85813401 + Lx3_Mus LINE L1 5162 5809 -77 3 876 397 267 29 9 chr9 38262800 38262931 -85813241 - Lx7 LINE L1 -2 7694 7581 3 876 1412 39 0 5 chr9 38264338 38264542 -85811630 + (TTTC)n Simple_repeat Simple_repeat 1 203 0 3 876 234 306 100 20 chr9 38265723 38265873 -85810299 + L1M4 LINE L1 4872 5033 -1113 3 876 419 338 29 0 chr9 38266042 38266178 -85809994 + MTEb LTR MaLR 22 161 -218 3 876 1752 308 26 30 chr9 38266202 38266767 -85809405 + Lx5 LINE L1 6473 7035 -15 3 876 646 272 83 5 chr9 38266786 38266978 -85809194 + MTEb LTR MaLR 167 373 -6 3 876 241 259 81 14 chr9 38267013 38267172 -85809000 + L1M4 LINE L1 5263 5431 -747 3 876 5157 158 61 0 chr9 38267233 38267936 -85808236 + Lx5 LINE L1 5046 5797 -1253 3 876 974 131 7 0 chr9 38267936 38268081 -85808091 + B1_Mus1 SINE Alu 2 147 -1 3 876 5157 243 50 29 chr9 38268081 38269271 -85806901 + Lx5 LINE L1 5798 7014 -36 3 876 24 0 0 0 chr9 38269271 38269295 -85806877 + AT_rich Low_complexity Low_complexity 1 24 0 3 876 463 225 44 18 chr9 38269698 38269811 -85806361 - B1_Mus1 SINE Alu -30 118 3 3 876 436 16 33 0 chr9 38270263 38270324 -85805848 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 3 876 1195 83 30 0 chr9 38271022 38271190 -85804982 + L1_Mus1 LINE L1 6394 6566 -1 3 876 24 32 0 0 chr9 38272863 38272894 -85803278 + AT_rich Low_complexity Low_complexity 1 31 0 3 877 297 169 0 0 chr9 38273442 38273501 -85802671 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 877 1495 123 0 8 chr9 38274177 38274415 -85801757 - L1_Mm LINE L1 -1201 4682 4447 3 877 3824 65 16 0 chr9 38274415 38274904 -85801268 + L1_Mus1 LINE L1 6071 6567 0 3 877 531 78 0 0 chr9 38275009 38275086 -85801086 + (TTTTA)n Simple_repeat Simple_repeat 5 81 0 3 877 719 204 0 55 chr9 38275094 38275239 -85800933 - B1_Mur4 SINE Alu -13 137 1 3 877 314 194 14 0 chr9 38276039 38276111 -85800061 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 877 1453 285 49 30 chr9 38276586 38277078 -85799094 - RLTR20B3 LTR ERVK -56 521 21 3 877 377 318 60 20 chr9 38277099 38277298 -85798874 + L1M4 LINE L1 4204 4410 -1736 3 877 279 261 96 0 chr9 38277466 38277581 -85798591 - L1M3 LINE L1 -2467 3673 3548 3 877 1016 110 7 14 chr9 38278903 38279050 -85797122 + B1_Mus1 SINE Alu 2 147 -1 3 877 691 89 18 9 chr9 38279050 38279163 -85797009 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 3 877 428 365 97 11 chr9 38279675 38279944 -85796228 + Lx8 LINE L1 7000 7291 -182 3 877 243 0 0 0 chr9 38280089 38280116 -85796056 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 877 468 35 0 0 chr9 38280117 38280175 -85795997 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 877 521 335 36 5 chr9 38281538 38281730 -85794442 - B3 SINE B2 -10 206 9 3 877 5159 87 78 89 chr9 38281913 38282816 -85793356 - RLTR13B1 LTR ERVK 0 893 1 3 877 966 123 0 7 chr9 38284091 38284238 -85791934 + B1_Mus1 SINE Alu 3 148 0 3 877 297 0 0 0 chr9 38284238 38284271 -85791901 + (A)n Simple_repeat Simple_repeat 1 33 0 3 877 324 333 12 12 chr9 38284508 38284678 -85791494 - Lx8 LINE L1 -1576 5897 5728 3 877 252 0 0 0 chr9 38284714 38284742 -85791430 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 877 251 311 70 27 chr9 38285214 38285399 -85790773 + L1_Rod LINE L1 923 1115 -6493 3 877 850 284 20 31 chr9 38285455 38285811 -85790361 + L1_Rod LINE L1 2403 2754 -3093 3 877 463 290 0 16 chr9 38285904 38286030 -85790142 - MTC LTR MaLR -5 416 293 3 877 245 98 0 24 chr9 38286139 38286181 -85789991 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 3 877 949 261 135 20 chr9 38286181 38286623 -85789549 + L1_Rod LINE L1 3654 4156 -1721 3 877 731 180 7 0 chr9 38286623 38286773 -85789399 + GA-rich Low_complexity Low_complexity 2 152 0 3 877 469 52 0 0 chr9 38286774 38286832 -85789340 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 3 877 352 249 21 85 chr9 38286845 38287048 -85789124 + L1_Rod LINE L1 4164 4393 -1750 3 877 426 366 49 11 chr9 38287053 38287238 -85788934 - ORR1E LTR MaLR -159 200 9 3 877 6194 105 15 7 chr9 38287476 38288274 -85787898 + Lx3_Mus LINE L1 6078 6877 -132 3 877 324 0 0 0 chr9 38288274 38288310 -85787862 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 877 6194 105 15 7 chr9 38288310 38288435 -85787737 + Lx3_Mus LINE L1 6878 7008 -1 3 877 318 263 68 34 chr9 38288724 38288842 -85787330 - L1_Rod LINE L1 -3915 1932 1811 3 877 263 200 0 0 chr9 38288846 38288891 -85787281 - Lx9 LINE L1 -655 6989 6945 3 877 574 327 47 16 chr9 38288883 38289138 -85787034 + Lx9 LINE L1 7192 7454 -190 3 877 186 43 0 0 chr9 38289183 38289206 -85786966 + (T)n Simple_repeat Simple_repeat 1 23 0 3 877 736 234 194 27 chr9 38289453 38289783 -85786389 + Lx9 LINE L1 7258 7642 -2 3 877 290 328 53 19 chr9 38289823 38290031 -85786141 - L1_Mur3 LINE L1 -4103 1777 1563 3 877 5508 171 22 8 chr9 38290186 38291172 -85785000 - Lx4A LINE L1 -3 7055 6056 3 877 1098 250 185 43 chr9 38291382 38291975 -85784197 - Lx6 LINE L1 -26 7434 6758 3 877 198 0 0 0 chr9 38292099 38292121 -85784051 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 877 723 278 128 51 chr9 38292178 38292531 -85783641 - Lx8 LINE L1 -766 6707 6328 3 877 245 333 21 36 chr9 38292534 38292674 -85783498 - MIR SINE MIR -26 236 99 3 877 630 111 0 66 chr9 38292744 38292850 -85783322 - B1_Mus2 SINE Alu -1 146 48 3 877 276 172 121 30 chr9 38292794 38292860 -85783312 - RLTR25A LTR ERVK -521 582 511 3 877 21 36 0 0 chr9 38293453 38293481 -85782691 + AT_rich Low_complexity Low_complexity 1 28 0 3 877 25 51 0 0 chr9 38296842 38296881 -85779291 + AT_rich Low_complexity Low_complexity 1 39 0 3 877 492 208 0 0 chr9 38297076 38297182 -85778990 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 877 476 351 0 20 chr9 38297806 38297957 -85778215 + RSINE1 SINE B4 8 155 -10 3 877 2790 58 0 6 chr9 38298136 38298484 -85777688 + ORR1A1 LTR MaLR 1 346 0 4 877 303 290 86 58 chr9 38299675 38299814 -85776358 + HAL1-3A_ME LINE L1 1976 2118 -740 4 877 292 327 68 41 chr9 38300878 38301411 -85774761 + L1_Rod LINE L1 2601 3147 -2700 4 877 230 91 33 83 chr9 38301408 38301468 -85774704 + Lx4A LINE L1 6993 7049 -9 4 877 407 290 64 45 chr9 38301469 38301736 -85774436 + L1_Mur3 LINE L1 3115 3386 -2757 4 877 254 240 47 19 chr9 38301825 38301931 -85774241 + L1_Mur3 LINE L1 3739 3847 -2296 4 877 832 301 84 8 chr9 38302044 38302425 -85773747 - L1_Mur3 LINE L1 -499 5813 5356 4 877 26 0 0 0 chr9 38302746 38302772 -85773400 + AT_rich Low_complexity Low_complexity 1 26 0 4 877 441 256 100 50 chr9 38302798 38302938 -85773234 - B1_Mur3 SINE Alu 0 149 3 4 877 3718 69 2 4 chr9 38303895 38304378 -85771794 - L1Md_T LINE L1 0 6582 6101 4 877 390 57 0 0 chr9 38305390 38305443 -85770729 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 877 275 177 34 34 chr9 38305462 38305608 -85770564 + (CAGAGA)n Simple_repeat Simple_repeat 2 147 0 4 877 288 0 0 0 chr9 38307273 38307305 -85768867 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 877 24 32 0 0 chr9 38307322 38307353 -85768819 + AT_rich Low_complexity Low_complexity 1 31 0 4 877 321 26 0 0 chr9 38307384 38307422 -85768750 + (T)n Simple_repeat Simple_repeat 1 38 0 4 877 37955 30 0 1 chr9 38307448 38313864 -85762308 - L1Md_T LINE L1 0 6585 76 4 877 492 99 0 0 chr9 38313930 38314001 -85762171 + (A)n Simple_repeat Simple_repeat 1 71 0 4 877 555 292 59 19 chr9 38316765 38317062 -85759110 - L1MA4 LINE L1 -364 5936 5565 4 877 436 341 27 24 chr9 38317653 38317855 -85758317 - L1MA4 LINE L1 -727 5573 5314 4 877 294 29 0 0 chr9 38317855 38317890 -85758282 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 877 510 17 0 0 chr9 38317890 38317948 -85758224 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 877 436 314 57 21 chr9 38317948 38318302 -85757870 - L1MA4 LINE L1 -794 5349 4995 4 877 1738 275 82 32 chr9 38319251 38321094 -85755078 + RMER1B Other Other 1 1055 -11 4 877 306 285 75 43 chr9 38322387 38322574 -85753598 - L1MA4 LINE L1 -2922 3221 3029 4 877 983 94 0 7 chr9 38322575 38322714 -85753458 - B1_Mus1 SINE Alu 0 148 11 4 877 21 36 0 0 chr9 38324621 38324649 -85751523 + AT_rich Low_complexity Low_complexity 1 28 0 4 877 324 0 0 0 chr9 38325117 38325153 -85751019 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 877 1752 183 93 22 chr9 38325600 38326008 -85750164 - RLTR9B LTR ERVK 0 437 1 4 877 576 323 20 0 chr9 38326340 38326535 -85749637 - B3 SINE B2 -13 203 5 4 877 230 301 92 35 chr9 38326910 38327137 -85749035 - L1M2 LINE L1 -399 5898 5659 4 877 22 0 0 0 chr9 38327753 38327775 -85748397 + AT_rich Low_complexity Low_complexity 1 22 0 4 877 267 392 60 23 chr9 38328001 38328134 -85748038 - ID_B1 SINE B4 0 224 87 4 877 1741 257 37 102 chr9 38329581 38330227 -85745945 + RLTR18 LTR ERVK 1 604 -12 4 877 183 114 0 0 chr9 38332253 38332288 -85743884 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 4 877 378 0 0 0 chr9 38332814 38332856 -85743316 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 877 3871 242 50 14 chr9 38332875 38333736 -85742436 + RMER13B LTR ERVK 1 873 -35 4 877 325 329 81 35 chr9 38334070 38334331 -85741841 - L1M4 LINE L1 -627 5557 5285 4 877 335 243 56 0 chr9 38334491 38334598 -85741574 + Lx9 LINE L1 7524 7636 -8 4 877 21 89 0 0 chr9 38334750 38334806 -85741366 + AT_rich Low_complexity Low_complexity 1 56 0 4 877 7905 106 9 5 chr9 38335020 38336953 -85739219 - L1_Mus2 LINE L1 0 6566 4625 4 877 261 392 48 0 chr9 38336958 38337083 -85739089 - ID_B1 SINE B4 -12 212 82 4 877 256 311 68 26 chr9 38337090 38337488 -85738684 - L1_Mur3 LINE L1 -1006 4880 4464 4 877 246 238 184 64 chr9 38337648 38337897 -85738275 - L1_Mur3 LINE L1 -1620 4260 4017 4 877 6083 78 21 5 chr9 38337959 38338758 -85737414 + MuRRS4-int LTR ERV1 1980 2791 -2272 4 877 5449 164 11 6 chr9 38338748 38339734 -85736438 + MuRRS4-int LTR ERV1 3626 4355 -708 4 877 298 320 8 47 chr9 38340343 38340471 -85735701 + MuRRS4-int LTR ERV1 6431 6553 -1003 4 877 910 119 0 0 chr9 38340480 38340614 -85735558 + MuRRS4-int LTR ERV1 4929 5062 -1 4 877 2179 132 59 27 chr9 38340635 38341009 -85735163 + LTRIS4 LTR ERV1 122 507 0 4 877 21 0 0 0 chr9 38341420 38341441 -85734731 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 8102 147 12 23 chr9 38342090 38344104 -85732068 + Lx3A LINE L1 4988 6975 -6 4 877 180 276 86 0 chr9 38344467 38344525 -85731647 - MIR SINE MIR -121 141 79 4 877 1007 245 60 87 chr9 38344652 38344987 -85731185 + ORR1D1 LTR MaLR 6 331 -43 4 877 235 312 19 0 chr9 38345793 38345947 -85730225 - Lx9 LINE L1 -4 7640 7484 4 877 22 0 0 0 chr9 38347688 38347710 -85728462 + AT_rich Low_complexity Low_complexity 1 22 0 4 877 207 0 0 0 chr9 38347843 38347866 -85728306 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 877 216 286 8 40 chr9 38348502 38348626 -85727546 + T-rich Low_complexity Low_complexity 3 122 0 4 877 33 43 0 0 chr9 38348697 38348744 -85727428 + AT_rich Low_complexity Low_complexity 1 47 0 4 877 237 256 74 74 chr9 38348754 38348889 -85727283 - L1M4 LINE L1 -459 5725 5591 4 877 22 0 0 0 chr9 38349668 38349690 -85726482 + AT_rich Low_complexity Low_complexity 1 22 0 4 877 231 240 39 26 chr9 38349987 38350064 -85726108 - L1M2 LINE L1 -634 5657 5580 4 877 1153 288 102 8 chr9 38350379 38350750 -85725422 + MTD LTR MaLR 1 406 -13 4 877 2476 311 39 24 chr9 38350823 38351751 -85724421 + Lx8 LINE L1 6334 7275 -198 4 877 39 0 0 0 chr9 38351784 38351823 -85724349 + AT_rich Low_complexity Low_complexity 1 39 0 4 877 9552 106 16 3 chr9 38352062 38353545 -85722627 + L1_Mur1 LINE L1 1342 2844 -3042 4 877 2023 95 29 3 chr9 38353551 38353857 -85722315 + L1_Mus3 LINE L1 6318 6631 -7 4 877 369 0 0 0 chr9 38353894 38353935 -85722237 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 877 1614 158 59 0 chr9 38353940 38354212 -85721960 + Lx3A LINE L1 6577 6864 -117 4 877 34400 51 0 3 chr9 38354223 38359759 -85716413 - L1Md_Gf LINE L1 -431 5455 1 4 877 477 0 0 0 chr9 38360234 38360287 -85715885 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 877 7629 60 6 0 chr9 38360814 38361769 -85714403 + L1_Mus1 LINE L1 5607 6567 0 4 877 35 63 0 0 chr9 38361839 38361902 -85714270 + AT_rich Low_complexity Low_complexity 1 63 0 4 877 6545 181 12 16 chr9 38361902 38363894 -85712278 - Lx LINE L1 -10 6644 4645 4 877 2763 52 91 0 chr9 38363894 38364257 -85711915 - MTA_Mm LTR MaLR 0 396 1 4 877 8349 68 6 2 chr9 38364257 38365350 -85710822 - MTA_Mm-int LTR MaLR 0 1098 1 4 877 2742 60 46 0 chr9 38365352 38365721 -85710451 - MTA_Mm LTR MaLR -2 394 9 4 877 4042 180 9 1 chr9 38365726 38366499 -85709673 - Lx LINE L1 -1245 4638 3860 4 877 2582 75 3 25 chr9 38366499 38366784 -85709388 + ORR1A1 LTR MaLR 1 286 -60 4 877 180 0 0 0 chr9 38366784 38366804 -85709368 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 877 180 0 0 0 chr9 38366809 38366829 -85709343 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 877 2582 75 3 25 chr9 38366829 38366891 -85709281 + ORR1A1 LTR MaLR 287 346 0 4 877 13112 71 9 5 chr9 38366891 38368673 -85707499 + ORR1A1-int LTR MaLR 1 1790 -2 4 877 276 168 55 10 chr9 38368673 38368750 -85707422 + ORR1A1 LTR MaLR 36 142 -252 4 877 32837 78 1 4 chr9 38368750 38374101 -85702071 + L1Md_F2 LINE L1 250 5586 -297 4 877 8059 43 3 2 chr9 38374101 38375096 -85701076 + L1Md_F2 LINE L1 5587 6582 0 4 877 2012 71 7 31 chr9 38375103 38375336 -85700836 + ORR1A1 LTR MaLR 62 289 -57 4 877 306 0 0 0 chr9 38375336 38375370 -85700802 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 877 2012 71 7 31 chr9 38375370 38375428 -85700744 + ORR1A1 LTR MaLR 290 346 0 4 877 5867 120 52 5 chr9 38375448 38376641 -85699531 - L1_Mur1 LINE L1 -2032 3854 2609 4 877 453 163 0 42 chr9 38376637 38376733 -85699439 - L1_Mur1 LINE L1 -1520 4366 4275 4 877 8093 52 3 3 chr9 38376737 38378283 -85697889 - L1Md_F3 LINE L1 -12 6572 5028 4 877 14011 80 11 14 chr9 38378281 38380931 -85695241 - L1Md_F3 LINE L1 -2848 3035 396 4 877 8381 134 121 7 chr9 38380937 38383873 -85692299 - L1VL4 LINE L1 -1597 4286 548 4 877 248 307 65 13 chr9 38383927 38384082 -85692090 - L1M2 LINE L1 -1075 5068 4906 4 877 309 360 61 0 chr9 38384119 38384233 -85691939 - ID_B1 SINE B4 -12 212 92 4 877 519 360 74 38 chr9 38384254 38384811 -85691361 - L1M2 LINE L1 -1239 4904 4328 4 877 253 233 122 82 chr9 38384813 38385009 -85691163 - L1_Mur2 LINE L1 -1617 4260 4057 4 877 625 322 136 40 chr9 38385026 38385450 -85690722 - L1M2 LINE L1 -2075 4068 3601 4 877 1490 33 44 0 chr9 38385450 38385630 -85690542 - B2_Mm1t SINE B2 -5 188 1 4 877 625 322 136 40 chr9 38385630 38386021 -85690151 - L1M2 LINE L1 -2543 3600 3175 4 877 402 250 12 0 chr9 38386022 38386106 -85690066 + L1_Mm LINE L1 5490 5574 -309 4 877 226 303 45 0 chr9 38386626 38386692 -85689480 - MIR SINE MIR -115 147 79 4 877 877 262 60 8 chr9 38386818 38387053 -85689119 + ORR1D1 LTR MaLR 6 252 -122 4 877 254 73 0 24 chr9 38387053 38387095 -85689077 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 877 944 80 73 0 chr9 38387108 38387245 -85688927 - B1_Mus1 SINE Alu 0 148 2 4 877 360 248 162 0 chr9 38388176 38388374 -85687798 - Lx9 LINE L1 -6 7638 7409 4 877 257 320 0 0 chr9 38388600 38388697 -85687475 - L1MA9 LINE L1 -196 6116 6020 4 877 242 56 28 0 chr9 38390058 38390094 -85686078 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 877 263 290 107 29 chr9 38390711 38390917 -85685255 - L1MB7 LINE L1 -221 5963 5742 4 877 24 53 0 0 chr9 38391552 38391590 -85684582 + AT_rich Low_complexity Low_complexity 1 38 0 4 877 1352 41 0 0 chr9 38391665 38391835 -85684337 - L1Md_F2 LINE L1 -12 6570 6401 4 877 390 155 27 27 chr9 38392121 38392194 -85683978 + MT-int LTR MaLR 42 114 -984 4 877 192 77 0 0 chr9 38392262 38392288 -85683884 + (T)n Simple_repeat Simple_repeat 1 26 0 4 877 5505 95 22 85 chr9 38392760 38393737 -85682435 + MT-int LTR MaLR 106 1021 -77 4 877 2327 298 98 27 chr9 38394607 38394645 -85681527 + Lx8 LINE L1 6182 6216 -1257 4 877 1147 248 153 11 chr9 38394645 38395012 -85681160 + MTD LTR MaLR 1 419 0 4 877 2327 298 98 27 chr9 38395012 38395855 -85680317 + Lx8 LINE L1 6217 7125 -348 4 877 336 291 34 44 chr9 38395847 38395884 -85680288 - L1M3 LINE L1 -3770 2376 2338 4 877 2727 64 143 139 chr9 38395884 38396394 -85679778 - RLTR1B LTR ERV1 0 512 1 4 877 506 259 49 8 chr9 38396394 38396623 -85679549 - L1M3 LINE L1 -3809 2337 2110 4 877 24 32 0 0 chr9 38396756 38396787 -85679385 + AT_rich Low_complexity Low_complexity 1 31 0 4 877 981 223 45 55 chr9 38396950 38397258 -85678914 - RMER5 LTR ERV1 -229 305 1 4 877 821 253 35 94 chr9 38397426 38397831 -85678341 - RMER17C LTR ERVK -29 381 1 5 877 2339 44 0 10 chr9 38398090 38398386 -85677786 + L1Md_F3 LINE L1 6278 6570 -14 5 877 344 321 85 12 chr9 38398395 38398559 -85677613 - RMER17C LTR ERVK -53 357 182 5 877 378 0 0 0 chr9 38398559 38398601 -85677571 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 877 1093 276 63 42 chr9 38398686 38399133 -85677039 + RMER5 LTR ERV1 32 487 -47 5 877 404 37 19 0 chr9 38399260 38399314 -85676858 + (TTTTA)n Simple_repeat Simple_repeat 5 59 0 5 877 360 0 0 0 chr9 38400067 38400107 -85676065 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 877 292 149 13 26 chr9 38401299 38401375 -85674797 + (TATG)n Simple_repeat Simple_repeat 2 76 0 5 877 30 27 0 0 chr9 38403330 38403367 -85672805 + AT_rich Low_complexity Low_complexity 1 37 0 5 877 216 111 0 0 chr9 38403583 38403619 -85672553 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 109 1209 261 96 44 chr9 38403973 38404358 -85671814 + MTD LTR MaLR 1 405 -14 5 878 1770 161 181 5 chr9 38404919 38405361 -85670811 - Lx2B LINE L1 -3 6973 6454 5 878 2793 131 47 31 chr9 38405363 38405874 -85670298 + Lx3C LINE L1 5941 6459 -517 5 878 5370 161 17 3 chr9 38406007 38407140 -85669032 - Lx2B LINE L1 -958 6042 4889 5 878 428 203 16 24 chr9 38407549 38407675 -85668497 + Lx9 LINE L1 7520 7644 0 5 878 209 288 0 0 chr9 38407776 38407842 -85668330 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 878 257 312 123 39 chr9 38408743 38408873 -85667299 + MTE2a LTR MaLR 36 176 -243 5 878 298 175 0 45 chr9 38408992 38409058 -85667114 + MTE2a LTR MaLR 303 365 -14 5 878 2385 170 37 0 chr9 38409316 38409722 -85666450 - Lx4A LINE L1 -457 6601 6181 5 878 2006 195 77 9 chr9 38409721 38410150 -85666022 + Lx4A LINE L1 6601 7058 0 5 878 321 324 82 19 chr9 38410174 38410382 -85665790 + RMER17C LTR ERVK 140 360 -50 5 878 305 280 113 1 chr9 38410883 38410989 -85665183 + B4A SINE B4 160 284 -8 5 878 23 68 0 0 chr9 38411043 38411087 -85665085 + AT_rich Low_complexity Low_complexity 1 44 0 5 878 236 263 37 73 chr9 38411243 38411325 -85664847 + MER58C DNA MER1_type 136 214 -1 5 878 220 321 13 13 chr9 38411401 38411480 -85664692 - B1_Mur4 SINE Alu -7 143 65 5 878 21 0 0 0 chr9 38412118 38412139 -85664033 + AT_rich Low_complexity Low_complexity 1 21 0 5 878 407 106 15 0 chr9 38415358 38415424 -85660748 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 878 1279 257 92 42 chr9 38416538 38416733 -85659439 + MTD LTR MaLR 1 188 -231 5 878 5383 78 0 22 chr9 38416733 38417466 -85658706 + L1_Mus1 LINE L1 5851 6567 0 5 878 1279 257 92 42 chr9 38417466 38417627 -85658545 + MTD LTR MaLR 189 375 -44 5 878 444 237 18 120 chr9 38417660 38417943 -85658229 - Lx9 LINE L1 -48 7596 7343 5 878 306 270 22 33 chr9 38417988 38418080 -85658092 - Lx6 LINE L1 -369 7091 7001 5 878 480 236 140 27 chr9 38418112 38418369 -85657803 - L1_Rod LINE L1 -6415 757 472 5 878 245 29 0 29 chr9 38418516 38418551 -85657621 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 5 878 424 303 94 49 chr9 38418558 38418908 -85657264 + L1MA4A LINE L1 4184 4549 -1594 5 878 1857 158 46 35 chr9 38418920 38419321 -85656851 - RMER16 LTR ERVK 0 533 1 5 878 459 304 123 17 chr9 38419331 38420187 -85655985 + L1MA4A LINE L1 4533 5450 -436 5 878 622 273 104 47 chr9 38420340 38420746 -85655426 + L1MA4A LINE L1 5494 5883 -1761 5 878 1386 246 72 99 chr9 38420746 38420877 -85655295 + RLTR12B LTR ERVK 1 116 -412 5 878 844 134 0 7 chr9 38420877 38421027 -85655145 + Lx LINE L1 6506 6654 0 5 878 1386 246 72 99 chr9 38421027 38421419 -85654753 + RLTR12B LTR ERVK 117 510 -18 5 878 23535 103 29 4 chr9 38421545 38424788 -85651384 - Lx3_Mus LINE L1 -1041 5968 2643 5 878 203 0 0 36 chr9 38424788 38424816 -85651356 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 878 23535 103 29 4 chr9 38424816 38425296 -85650876 - Lx3_Mus LINE L1 -3244 2642 2147 5 878 6401 87 16 8 chr9 38425287 38426170 -85650002 - L1Md_F2 LINE L1 -3 6579 5690 5 878 1313 154 152 13 chr9 38426170 38426473 -85649699 + IAPLTR4 LTR ERVK 1 345 0 5 878 11484 55 16 13 chr9 38426473 38428005 -85648167 + IAPLTR4_I LTR ERVK 19 1470 0 5 878 1283 219 115 52 chr9 38428117 38428604 -85647568 + ETnERV2-int LTR ERVK 251 668 -5469 5 878 437 188 94 0 chr9 38428602 38428719 -85647453 + ETnERV2-int LTR ERVK 1719 1846 -5560 5 878 281 279 0 55 chr9 38428732 38428823 -85647349 + ETnERV2-int LTR ERVK 2454 2539 -4867 5 878 629 219 0 0 chr9 38428835 38428954 -85647218 + ETnERV2-int LTR ERVK 2635 2753 -4653 5 878 2078 143 106 5 chr9 38428980 38429570 -85646602 + ETnERV2-int LTR ERVK 3567 4271 -3135 5 878 414 181 28 37 chr9 38429575 38429684 -85646488 + MMETn-int LTR ERVK 2357 2464 -2380 5 878 794 103 35 49 chr9 38429710 38429853 -85646319 + ETnERV2-int LTR ERVK 4530 4670 -2911 5 878 5986 255 47 36 chr9 38429962 38432482 -85643690 + IAPLTR3-int LTR ERVK 3468 7320 -360 5 878 1243 172 65 12 chr9 38432482 38432774 -85643398 + IAPLTR4 LTR ERVK 1 317 -15 5 878 31340 90 23 2 chr9 38432805 38437856 -85638316 - L1Md_F LINE L1 -188 5695 535 5 878 1738 121 0 10 chr9 38437888 38438180 -85637992 - L1_Mur1 LINE L1 -3716 2170 1882 5 878 225 343 9 9 chr9 38438179 38438285 -85637887 + Lx4B LINE L1 6271 6376 -682 5 878 318 360 14 29 chr9 38438274 38438414 -85637758 + Lx6 LINE L1 6596 6733 -727 5 878 423 0 0 0 chr9 38438421 38438468 -85637704 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 878 207 0 0 0 chr9 38438468 38438490 -85637682 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 878 297 0 0 0 chr9 38438490 38438522 -85637650 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 878 1005 228 118 78 chr9 38438525 38438959 -85637213 + RLTR11A LTR ERVK 20 517 -11 5 878 22 35 0 0 chr9 38438980 38439009 -85637163 + AT_rich Low_complexity Low_complexity 1 29 0 5 878 660 252 45 10 chr9 38439009 38439231 -85636941 + Lx6 LINE L1 6483 6894 -566 5 878 2724 116 5 14 chr9 38439231 38439644 -85636528 - RLTR9E LTR ERVK 0 409 1 5 878 567 55 0 0 chr9 38439644 38439717 -85636455 - ETnERV2-int LTR ERVK -2 7404 7332 5 878 20668 107 12 22 chr9 38439932 38442947 -85633225 - ETnERV2-int LTR ERVK -980 6426 3442 5 878 5477 138 16 33 chr9 38443223 38444225 -85631947 - ETnERV2-int LTR ERVK -3958 3448 1995 5 878 1698 145 13 13 chr9 38444250 38444550 -85631622 - ETnERV2-int LTR ERVK -5321 2085 1786 5 878 4251 43 6 8 chr9 38444550 38445063 -85631109 + LTRIS3 LTR ERV1 1 512 0 5 878 703 144 45 3 chr9 38445216 38445387 -85630785 + RLTR1B-int LTR ERV1 63 293 -3006 5 878 963 104 70 13 chr9 38445738 38445894 -85630278 + RMER16-int LTR ERVK 146 310 -5096 5 878 3721 140 129 18 chr9 38445898 38446573 -85629599 + RMER16-int LTR ERVK 695 1444 -3962 5 878 9350 131 81 54 chr9 38446564 38448843 -85627329 + RLTR1B-int LTR ERV1 760 2555 -744 5 878 1318 285 61 23 chr9 38448830 38449257 -85626915 + RLTR1B-int LTR ERV1 3705 4147 -916 5 878 1031 181 35 13 chr9 38449341 38449570 -85626602 + RLTR1B-int LTR ERV1 4788 5021 -42 5 878 4266 39 6 8 chr9 38449570 38450083 -85626089 + LTRIS3 LTR ERV1 1 512 0 5 878 3287 151 81 27 chr9 38450090 38450759 -85625413 - ETnERV2-int LTR ERVK -5631 1775 1071 5 878 1298 220 43 53 chr9 38450769 38451144 -85625028 - ETnERV2-int LTR ERVK -2927 387 17 5 878 2482 125 5 19 chr9 38451146 38451546 -85624626 - RLTR9E LTR ERVK -36 373 7 5 878 866 205 294 26 chr9 38451560 38451895 -85624277 + Lx6 LINE L1 7034 7458 -2 5 878 325 303 30 18 chr9 38452914 38453119 -85623053 + B3A SINE B2 8 216 0 5 878 183 80 0 0 chr9 38454062 38454087 -85622085 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 878 714 69 0 0 chr9 38455268 38455369 -85620803 + (TC)n Simple_repeat Simple_repeat 2 102 0 5 878 330 98 0 0 chr9 38455370 38455421 -85620751 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 878 614 292 54 36 chr9 38455544 38455824 -85620348 - Lx8 LINE L1 -195 7278 6994 5 878 239 69 50 33 chr9 38457595 38457655 -85618517 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 5 878 210 162 0 0 chr9 38457768 38457805 -85618367 + (CAA)n Simple_repeat Simple_repeat 2 38 0 5 878 315 260 182 9 chr9 38457853 38458078 -85618094 - L1M4 LINE L1 -1564 4582 4319 5 878 1917 264 33 27 chr9 38458164 38458685 -85617487 - Lx6 LINE L1 0 7460 6937 5 878 6205 196 60 116 chr9 38458705 38459004 -85617168 - L1_Mur3 LINE L1 -1752 4128 3810 5 878 210 37 0 0 chr9 38459004 38459031 -85617141 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 878 6205 196 60 116 chr9 38459031 38459771 -85616401 - L1_Mur3 LINE L1 -2071 3809 3001 5 878 186 43 0 0 chr9 38459771 38459794 -85616378 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 878 6205 196 60 116 chr9 38459794 38460787 -85615385 - L1_Mur3 LINE L1 -2880 3000 2212 5 878 261 340 45 77 chr9 38460790 38460931 -85615241 - Lx5 LINE L1 -48 7002 6866 5 878 646 109 0 0 chr9 38460931 38461032 -85615140 - L1_Mus2 LINE L1 0 6566 6466 5 878 261 340 45 77 chr9 38461032 38461046 -85615126 - Lx5 LINE L1 -185 6865 6852 5 878 1074 291 65 25 chr9 38461069 38461241 -85614931 - Lx5 LINE L1 -262 6788 6597 5 878 1998 109 81 17 chr9 38461241 38461585 -85614587 + RLTR9A LTR ERVK 1 366 -2 5 878 1206 280 68 11 chr9 38461585 38462175 -85613997 - Lx5 LINE L1 -566 6894 6085 5 878 324 310 13 0 chr9 38462170 38462328 -85613844 - L1_Mur3 LINE L1 -6703 1025 866 5 878 1517 219 29 96 chr9 38462521 38462905 -85613267 - ORR1B1 LTR MaLR -4 390 33 5 878 270 0 0 0 chr9 38462976 38463006 -85613166 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 878 260 254 0 0 chr9 38463110 38463173 -85612999 - L1M4 LINE L1 -1988 4152 4090 5 878 205 250 18 0 chr9 38463466 38463522 -85612650 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 878 264 59 0 0 chr9 38463535 38463569 -85612603 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 878 28 48 0 0 chr9 38464270 38464312 -85611860 + AT_rich Low_complexity Low_complexity 1 42 0 5 878 205 191 0 0 chr9 38464735 38464777 -85611395 + T-rich Low_complexity Low_complexity 1 42 0 5 878 1019 108 0 7 chr9 38464778 38464927 -85611245 - B1_Mus1 SINE Alu 0 148 1 5 878 3425 33 0 0 chr9 38466431 38466827 -85609345 - MTA_Mm LTR MaLR 0 396 1 5 878 407 78 39 13 chr9 38467119 38467197 -85608975 + (GA)n Simple_repeat Simple_repeat 2 81 0 5 878 1900 73 0 0 chr9 38467628 38467876 -85608296 + L1_Mus1 LINE L1 6320 6567 0 5 878 225 0 0 0 chr9 38468277 38468302 -85607870 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 878 225 0 0 0 chr9 38468301 38468326 -85607846 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 878 365 262 21 27 chr9 38468326 38468514 -85607658 + Lx9 LINE L1 7458 7644 0 5 878 225 0 0 0 chr9 38468665 38468690 -85607482 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 878 209 115 31 62 chr9 38468765 38468830 -85607342 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 878 22 35 0 0 chr9 38469118 38469147 -85607025 + AT_rich Low_complexity Low_complexity 1 29 0 5 878 6069 132 27 16 chr9 38469148 38470151 -85606021 - Lx3A LINE L1 -8 6973 5960 5 878 220 273 0 0 chr9 38471074 38471129 -85605043 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 878 370 225 4 22 chr9 38474082 38474187 -85601985 + Lx7 LINE L1 7607 7694 -2 5 878 468 0 0 0 chr9 38474225 38474277 -85601895 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 878 305 260 92 29 chr9 38474945 38475119 -85601053 + Lx9 LINE L1 7280 7464 -180 5 878 714 82 0 0 chr9 38475124 38475222 -85600950 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 5 878 246 283 33 8 chr9 38475225 38475346 -85600826 + Lx9 LINE L1 7521 7644 0 5 878 318 138 0 0 chr9 38475494 38475552 -85600620 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 878 27 0 0 0 chr9 38475912 38475939 -85600233 + AT_rich Low_complexity Low_complexity 1 27 0 5 878 238 270 0 0 chr9 38476911 38476974 -85599198 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 5 878 21 0 0 0 chr9 38477618 38477639 -85598533 + AT_rich Low_complexity Low_complexity 1 21 0 5 878 276 233 27 0 chr9 38477979 38478052 -85598120 + L1_Mur3 LINE L1 4525 4599 -1281 5 878 461 300 95 4 chr9 38478087 38478328 -85597844 + RCHARR1 DNA MER1_type 523 785 -189 5 878 790 78 0 102 chr9 38479159 38479330 -85596842 + B2_Mm1a SINE B2 53 195 0 5 878 244 343 132 24 chr9 38479329 38479541 -85596631 - LTR16B1 LTR ERVL -21 459 225 6 878 310 271 0 0 chr9 38482778 38482863 -85593309 - L1MA4 LINE L1 -372 5928 5844 6 878 15241 69 5 1 chr9 38483441 38486164 -85590008 - L1Md_F2 LINE L1 -2 6580 3848 6 878 261 0 0 0 chr9 38486164 38486193 -85589979 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 878 1821 257 80 6 chr9 38486614 38487087 -85589085 + RLTR20B1 LTR ERVK 6 513 -50 6 878 229 335 88 26 chr9 38487521 38487748 -85588424 + L1MB7 LINE L1 5734 5974 -210 6 878 331 367 29 71 chr9 38487950 38488120 -85588052 + RSINE1 SINE B4 3 165 0 6 878 3275 191 13 13 chr9 38488629 38489225 -85586947 - RLTR17 LTR ERVK -96 596 1 6 878 964 113 0 0 chr9 38489382 38489523 -85586649 + B1_Mm SINE Alu 5 145 -2 6 878 2784 179 23 14 chr9 38489546 38490060 -85586112 - RLTR11A LTR ERVK 0 528 10 6 878 40 67 0 0 chr9 38490090 38490165 -85586007 + AT_rich Low_complexity Low_complexity 1 75 0 6 878 255 31 0 0 chr9 38490629 38490661 -85585511 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 878 2116 261 60 14 chr9 38490814 38491366 -85584806 - Lx5 LINE L1 0 7050 6474 6 878 4384 202 48 7 chr9 38491361 38492616 -85583556 + Lx5 LINE L1 5180 6492 -558 6 878 1625 237 13 127 chr9 38494278 38494640 -85581532 + L1_Mur1 LINE L1 767 1101 -5883 6 878 318 98 0 0 chr9 38494640 38494691 -85581481 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 6 878 13930 202 33 82 chr9 38494691 38496231 -85579941 + L1_Mur1 LINE L1 1102 2601 -3276 6 878 207 0 0 0 chr9 38496231 38496254 -85579918 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 878 243 0 0 0 chr9 38496254 38496280 -85579892 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 878 13930 197 35 76 chr9 38496280 38498558 -85577614 + L1_Mur1 LINE L1 2602 4728 -1149 6 878 234 0 49 82 chr9 38498558 38498619 -85577553 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 6 878 13930 197 35 76 chr9 38498619 38498783 -85577389 + L1_Mur1 LINE L1 4729 4886 -991 6 878 3494 156 6 67 chr9 38499295 38499996 -85576176 + L1_Mur1 LINE L1 4886 5543 -343 6 878 5783 173 24 5 chr9 38500000 38501097 -85575075 + Lx3C LINE L1 5548 6663 -313 1 878 2093 258 61 90 chr9 38501105 38502082 -85574090 + RMER17B LTR ERVK 8 956 -2 2 878 433 197 268 11 chr9 38502119 38502284 -85573888 + Lx3C LINE L1 6651 6858 -118 1 878 22 35 0 0 chr9 38502558 38502587 -85573585 + AT_rich Low_complexity Low_complexity 1 29 0 3 878 1342 193 202 0 chr9 38502689 38503015 -85573157 - ORR1B1 LTR MaLR -2 392 1 4 878 6233 114 20 5 chr9 38503384 38504329 -85571843 + Lx LINE L1 5689 6647 -7 5 878 22 0 0 0 chr9 38504553 38504575 -85571597 + AT_rich Low_complexity Low_complexity 1 22 0 6 878 444 37 0 0 chr9 38504785 38504839 -85571333 + (CTG)n Simple_repeat Simple_repeat 1 54 0 7 878 365 364 114 55 chr9 38506315 38507040 -85569132 + L1MB8 LINE L1 4109 4876 -1270 8 878 979 299 55 15 chr9 38507353 38507876 -85568296 + L1MB8 LINE L1 5288 5831 -347 8 878 1775 148 39 33 chr9 38507905 38508240 -85567932 + Lx LINE L1 6317 6653 -1 9 878 821 103 8 0 chr9 38508244 38508370 -85567802 + (GGAA)n Simple_repeat Simple_repeat 2 128 0 1 878 652 198 0 13 chr9 38508374 38508429 -85567743 + polypurine Low_complexity Low_complexity 2 55 0 1 878 1242 100 0 0 chr9 38508429 38508609 -85567563 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 1 878 652 198 0 13 chr9 38508609 38508712 -85567460 + polypurine Low_complexity Low_complexity 56 157 0 1 878 356 308 36 27 chr9 38508738 38508958 -85567214 + L1MB8 LINE L1 5896 6117 -67 8 878 198 103 0 0 chr9 38508972 38509001 -85567171 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 878 312 188 0 0 chr9 38509001 38509049 -85567123 - HAL1-3A_ME LINE L1 -846 2012 1965 1 878 482 133 0 11 chr9 38511216 38511307 -85564865 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 878 1734 126 0 0 chr9 38511449 38511718 -85564454 - L1_Mm LINE L1 -1852 4031 3763 1 878 21 36 0 0 chr9 38511764 38511792 -85564380 + AT_rich Low_complexity Low_complexity 1 28 0 1 878 570 326 133 22 chr9 38512263 38513225 -85562947 + L1M4 LINE L1 4040 5108 -1038 1 878 677 290 43 11 chr9 38513300 38513488 -85562684 + Lx8 LINE L1 6326 6519 -954 2 878 30851 95 12 13 chr9 38513512 38517421 -85558751 + L1Md_F2 LINE L1 189 4103 -1780 2 878 2822 52 5 11 chr9 38517421 38517788 -85558384 + L1Md_F3 LINE L1 6219 6583 -1 2 878 30851 81 7 12 chr9 38517788 38519287 -85556885 + L1Md_F2 LINE L1 4104 5585 -298 2 878 7060 84 11 32 chr9 38519288 38520295 -85555877 + L1Md_F2 LINE L1 5587 6572 -10 2 878 551 260 225 6 chr9 38520295 38520473 -85555699 - MTD LTR MaLR -7 412 196 2 878 7621 35 0 0 chr9 38520473 38521377 -85554795 - L1Md_A LINE L1 -2 6580 5677 2 878 700 259 12 6 chr9 38521377 38521540 -85554632 - MTD LTR MaLR -209 210 47 2 878 453 341 75 7 chr9 38521551 38521829 -85554343 + Lx8 LINE L1 6528 6824 -649 2 878 576 352 23 4 chr9 38522230 38522492 -85553680 + Lx8 LINE L1 6809 7075 -398 2 878 447 180 30 0 chr9 38522489 38522589 -85553583 + Lx7 LINE L1 6986 7088 -608 2 878 2510 191 28 4 chr9 38524065 38524560 -85551612 - Lx LINE L1 -5 6649 6143 2 878 1482 231 0 118 chr9 38525132 38525583 -85550589 - RMER10B LTR ERVL 0 398 1 2 878 206 215 75 12 chr9 38526199 38526279 -85549893 + CT-rich Low_complexity Low_complexity 6 90 0 2 878 774 311 59 64 chr9 38527825 38528234 -85547938 - Lx LINE L1 -2 7471 7065 2 878 227 174 22 0 chr9 38528358 38528404 -85547768 - Lx LINE L1 -519 6954 6908 2 878 1124 129 67 5 chr9 38528417 38528612 -85547560 - Lx LINE L1 -5 6649 6443 2 878 3170 117 2 0 chr9 38528612 38529074 -85547098 + L1_Mm LINE L1 5367 5829 -54 3 878 594 201 7 130 chr9 38529298 38529452 -85546720 + B3 SINE B2 82 216 0 3 878 22 0 0 0 chr9 38532021 38532043 -85544129 + AT_rich Low_complexity Low_complexity 1 22 0 3 878 706 73 18 9 chr9 38532392 38532502 -85543670 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 3 109 577 209 33 103 chr9 38535019 38535291 -85540881 - RMER17C LTR ERVK -157 253 1 3 879 271 291 12 0 chr9 38536898 38536984 -85539188 + MER2B DNA MER2_type 158 244 -92 3 879 357 311 86 77 chr9 38537281 38537506 -85538666 - L1M5 LINE L1 -753 5393 5170 3 879 383 280 60 15 chr9 38537506 38537640 -85538532 - B1F2 SINE Alu -9 140 1 3 879 357 311 86 77 chr9 38537640 38537727 -85538445 - L1M5 LINE L1 -977 5169 5079 3 879 490 311 186 23 chr9 38538035 38538384 -85537788 - Lx8 LINE L1 -842 6631 6226 3 879 247 272 73 42 chr9 38538683 38538779 -85537393 - L1M5 LINE L1 -1250 4896 4798 3 879 244 157 0 29 chr9 38538882 38538995 -85537177 + CT-rich Low_complexity Low_complexity 1 109 0 3 879 1137 36 0 0 chr9 38538998 38539136 -85537036 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 4 879 22 35 0 0 chr9 38539383 38539412 -85536760 + AT_rich Low_complexity Low_complexity 1 29 0 4 879 243 0 0 0 chr9 38539797 38539824 -85536348 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 879 203 61 30 0 chr9 38539824 38539856 -85536316 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 879 232 316 74 29 chr9 38539903 38540147 -85536025 - L1M5 LINE L1 -2199 3947 3693 3 879 1572 159 30 89 chr9 38542685 38543121 -85533051 - RMER17C LTR ERVK 0 410 1 4 879 217 113 36 36 chr9 38543301 38543356 -85532816 + CT-rich Low_complexity Low_complexity 5 59 0 4 879 183 42 0 0 chr9 38544234 38544258 -85531914 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 879 32 0 0 0 chr9 38546037 38546069 -85530103 + AT_rich Low_complexity Low_complexity 1 32 0 4 879 994 135 64 12 chr9 38546639 38546811 -85529361 + B2_Mm2 SINE B2 1 181 -14 4 879 205 167 0 0 chr9 38547425 38547461 -85528711 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 879 1082 78 0 0 chr9 38547945 38548087 -85528085 - B1_Mus1 SINE Alu 0 148 7 5 879 397 277 12 98 chr9 38547980 38548144 -85528028 - MT2B LTR ERVL -337 264 115 5 879 263 62 14 71 chr9 38548475 38548545 -85527627 + (TTTTTG)n Simple_repeat Simple_repeat 1 66 0 5 879 5769 209 25 45 chr9 38549639 38551005 -85525167 + RLTR21 LTR ERVK 6 1306 -266 5 879 663 94 0 0 chr9 38551005 38551101 -85525071 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 879 1407 253 72 58 chr9 38551101 38551146 -85525026 + RLTR21 LTR ERVK 1229 1254 -318 5 879 221 30 0 57 chr9 38551146 38551181 -85524991 + (TATG)n Simple_repeat Simple_repeat 1 33 0 5 879 1407 253 72 58 chr9 38551181 38551217 -85524955 + RLTR21 LTR ERVK 1255 1299 -273 5 879 387 0 0 0 chr9 38551217 38551260 -85524912 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 879 1407 253 72 58 chr9 38551260 38551513 -85524659 + RLTR21 LTR ERVK 1300 1560 -12 5 879 280 209 14 29 chr9 38551912 38551981 -85524191 - MTE2a LTR MaLR -2 377 310 5 879 215 273 63 25 chr9 38552060 38552139 -85524033 + PB1D9 SINE Alu 1 82 -38 5 879 347 206 45 36 chr9 38552657 38552768 -85523404 + Lx2 LINE L1 27 138 -6846 5 879 6053 160 51 10 chr9 38552771 38554341 -85521831 - MurERV4_19-int LTR ERVK -486 5294 3660 6 879 1552 132 4 0 chr9 38554675 38554924 -85521248 + Lx LINE L1 6401 6650 -4 6 879 189 228 121 17 chr9 38557108 38557166 -85519006 - L2c LINE L2 -195 3192 3129 6 879 286 257 142 4 chr9 38557299 38557458 -85518714 - Lx4B LINE L1 -8 7050 6873 6 879 4308 152 17 27 chr9 38557456 38558670 -85517502 + Lx2 LINE L1 5092 6284 -713 5 879 3422 256 60 87 chr9 38558656 38559915 -85516257 + Lx7 LINE L1 6464 7689 -7 6 879 1802 240 24 31 chr9 38559928 38560349 -85515823 - Lx5 LINE L1 -1 7049 6632 6 879 321 194 13 40 chr9 38560349 38560424 -85515748 - RLTR25A LTR ERVK 0 1103 1031 6 879 403 159 62 21 chr9 38560428 38560524 -85515648 + Lx9 LINE L1 7468 7567 -77 6 879 236 266 44 8 chr9 38560737 38560813 -85515359 - PB1D10 SINE Alu -37 83 2 6 879 200 379 34 17 chr9 38561378 38561496 -85514676 - MIR SINE MIR -115 147 28 6 879 258 359 0 13 chr9 38561640 38561719 -85514453 + ID4_ SINE ID 2 79 -4 7 879 454 43 14 14 chr9 38562406 38562476 -85513696 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 879 698 316 30 0 chr9 38564355 38564586 -85511586 + Lx8 LINE L1 6758 6995 -478 7 879 1032 290 49 51 chr9 38564667 38565013 -85511159 + Lx7 LINE L1 6986 7339 -357 7 879 308 24 24 0 chr9 38565013 38565054 -85511118 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 7 879 1028 103 0 0 chr9 38565054 38565190 -85510982 - B1_Mus1 SINE Alu -11 137 2 7 879 1032 290 49 51 chr9 38565190 38565271 -85510901 + Lx7 LINE L1 7340 7412 -284 7 879 3251 41 8 0 chr9 38565895 38566288 -85509884 + MTA_Mm LTR MaLR 1 396 0 7 879 1181 230 45 31 chr9 38568402 38568821 -85507351 - RMER10B LTR ERVL -23 375 1 7 879 192 179 0 56 chr9 38569377 38569448 -85506724 + CT-rich Low_complexity Low_complexity 4 70 0 7 879 906 92 25 25 chr9 38572004 38572161 -85504011 + L1Md_F2 LINE L1 6423 6579 -3 7 879 25 31 0 0 chr9 38572177 38572209 -85503963 + AT_rich Low_complexity Low_complexity 1 32 0 8 879 191 246 99 28 chr9 38572250 38572321 -85503851 - MIRb SINE MIR -67 201 126 8 879 921 287 19 16 chr9 38573290 38573609 -85502563 - RodERV21-int LTR ERV1 -198 4793 4474 8 879 3025 201 34 71 chr9 38573746 38574516 -85501656 + RLTR42-int LTR ERVK 2317 3057 -2465 8 879 964 163 66 0 chr9 38574565 38574731 -85501441 + RLTR42-int LTR ERVK 3066 3242 -2280 8 879 853 219 42 23 chr9 38574731 38574944 -85501228 - ORR1C2 LTR MaLR 0 384 149 8 879 804 154 0 0 chr9 38574959 38575134 -85501038 + GA-rich Low_complexity Low_complexity 2 176 0 8 879 825 222 26 16 chr9 38575165 38575357 -85500815 - ORR1C2 LTR MaLR -190 194 1 8 879 1062 151 109 18 chr9 38575360 38575589 -85500583 + RLTR42-int LTR ERVK 3241 3490 -2032 8 879 25 31 0 0 chr9 38575622 38575654 -85500518 + AT_rich Low_complexity Low_complexity 1 32 0 8 879 1305 156 4 4 chr9 38575667 38575893 -85500279 - L1_Mm LINE L1 -489 5394 5169 8 879 3462 159 0 7 chr9 38575873 38576479 -85499693 - L1_Mur2 LINE L1 -1114 4763 4162 8 879 1326 153 79 0 chr9 38576480 38576721 -85499451 + Lx LINE L1 6380 6639 -15 8 879 210 118 0 0 chr9 38576731 38576765 -85499407 + (TA)n Simple_repeat Simple_repeat 1 34 0 9 879 6222 215 53 29 chr9 38576772 38578322 -85497850 + RLTR42-int LTR ERVK 3930 5517 -5 8 879 284 53 0 0 chr9 38578334 38578372 -85497800 + RLTR42 LTR ERVK 8 45 -194 8 879 254 293 71 112 chr9 38578456 38578652 -85497520 + RLTR42 LTR ERVK 52 239 0 8 879 749 206 136 22 chr9 38578660 38578844 -85497328 - MTC LTR MaLR -203 218 14 9 879 311 343 87 7 chr9 38578910 38579048 -85497124 - MTC-int LTR MaLR -375 883 735 9 879 1427 147 29 147 chr9 38579038 38579528 -85496644 + RMER17C LTR ERVK 19 439 -519 9 879 937 199 11 27 chr9 38579537 38579723 -85496449 - MTC-int LTR MaLR -505 753 571 9 879 22 35 0 0 chr9 38579842 38579871 -85496301 + AT_rich Low_complexity Low_complexity 1 29 0 9 879 1754 46 5 0 chr9 38579873 38580092 -85496080 + L1Md_T LINE L1 6361 6580 -2 9 879 416 167 0 0 chr9 38580150 38580216 -85495956 - B1_Mus1 SINE Alu -81 67 2 9 879 364 279 88 38 chr9 38581782 38581942 -85494230 - RMER15 LTR ERVL 0 575 408 9 879 294 87 0 0 chr9 38582489 38582535 -85493637 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 9 879 388 332 20 27 chr9 38582536 38582697 -85493475 - ID_B1 SINE B4 -46 246 85 9 879 531 0 0 0 chr9 38584274 38584333 -85491839 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 879 21 36 0 0 chr9 38585439 38585467 -85490705 + AT_rich Low_complexity Low_complexity 1 28 0 1 879 25 65 0 0 chr9 38585673 38585719 -85490453 + AT_rich Low_complexity Low_complexity 1 46 0 1 879 266 0 29 0 chr9 38585761 38585795 -85490377 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 879 992 354 40 8 chr9 38586349 38586867 -85489305 + Lx8 LINE L1 6865 7399 -74 1 879 218 115 48 16 chr9 38587455 38587517 -85488655 + A-rich Low_complexity Low_complexity 2 65 0 1 879 405 0 0 0 chr9 38588275 38588320 -85487852 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 879 1929 232 111 47 chr9 38588360 38588752 -85487420 - Lx7 LINE L1 0 7696 7314 1 879 847 27 18 0 chr9 38588752 38588862 -85487310 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 1 879 1929 232 111 47 chr9 38588862 38589175 -85486997 - Lx7 LINE L1 -383 7313 6946 1 879 1950 268 58 99 chr9 38589192 38590158 -85486014 - RMER17B LTR ERVK -32 926 1 1 879 2357 252 36 14 chr9 38590163 38590722 -85485450 - Lx7 LINE L1 -766 6930 6360 1 879 1514 279 69 76 chr9 38590719 38591298 -85484874 - RMER1B Other Other -556 510 7 1 879 1211 216 84 1 chr9 38591610 38591916 -85484256 - L1_Mur3 LINE L1 -315 5565 5265 1 879 252 0 0 0 chr9 38592200 38592228 -85483944 + (T)n Simple_repeat Simple_repeat 1 28 0 1 879 836 82 2 3 chr9 38592261 38592387 -85483785 - B1_Mus2 SINE Alu 0 149 25 1 879 273 29 0 0 chr9 38593387 38593421 -85482751 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 879 5186 141 35 22 chr9 38594358 38595266 -85480906 - Lx2 LINE L1 -468 6529 5610 1 879 2826 276 80 30 chr9 38595443 38596110 -85480062 - Lx6 LINE L1 -19 7441 6750 1 879 1377 61 0 0 chr9 38596110 38596290 -85479882 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 879 2826 276 80 30 chr9 38596290 38596534 -85479638 - Lx6 LINE L1 -711 6749 6484 1 879 486 0 0 0 chr9 38596589 38596643 -85479529 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 879 1654 198 9 6 chr9 38596659 38596984 -85479188 + ORR1A3 LTR MaLR 1 326 0 1 879 8491 177 90 21 chr9 38596984 38598820 -85477352 + ORR1A3-int LTR MaLR 1 1963 0 1 879 1196 202 123 0 chr9 38598820 38599097 -85477075 + ORR1A3 LTR MaLR 1 311 -18 1 879 1051 122 0 0 chr9 38599235 38599382 -85476790 - B1_Mus1 SINE Alu 0 148 2 1 879 335 169 0 33 chr9 38599765 38599844 -85476328 + ORR1A3 LTR MaLR 299 394 0 1 879 482 46 15 0 chr9 38599851 38599916 -85476256 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 1 879 1957 243 43 118 chr9 38600066 38600668 -85475504 + RMER19C LTR ERVK 1 557 -54 1 879 261 0 0 0 chr9 38600754 38600783 -85475389 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1 879 1120 288 68 11 chr9 38600961 38601326 -85474846 + Lx7 LINE L1 6894 7279 -417 1 879 297 0 0 0 chr9 38601412 38601445 -85474727 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 879 324 0 0 0 chr9 38601445 38601480 -85474692 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 879 2204 186 89 26 chr9 38602352 38602844 -85473328 + RMER16 LTR ERVK 1 523 -10 1 879 8858 118 35 4 chr9 38602850 38604232 -85471940 + RMER16-int LTR ERVK 1 1424 -3982 1 879 1221 158 1 48 chr9 38604291 38604534 -85471638 + RMER16-int LTR ERVK 1331 1536 -3870 1 879 257 65 0 0 chr9 38604650 38604681 -85471491 + ETnERV2-int LTR ERVK 3178 3208 -4198 1 879 3883 94 31 0 chr9 38604677 38605231 -85470941 + RMER16-int LTR ERVK 2357 2927 -2479 1 879 36105 64 3 10 chr9 38605231 38611421 -85464751 - L1Md_F3 LINE L1 -2 6582 441 1 879 8233 83 35 13 chr9 38611432 38612613 -85463559 + RMER16-int LTR ERVK 2916 4122 -1284 1 879 1397 166 155 9 chr9 38612613 38612936 -85463236 + RMER16 LTR ERVK 164 533 0 1 879 559 323 72 0 chr9 38612949 38613116 -85463056 - B4A SINE B4 -59 233 55 1 879 410 365 37 19 chr9 38613274 38613436 -85462736 + B4A SINE B4 2 166 -126 1 879 303 93 0 0 chr9 38613539 38613582 -85462590 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 879 252 262 0 16 chr9 38614260 38614322 -85461850 + B4A SINE B4 2 62 -230 1 879 498 17 0 0 chr9 38614328 38614387 -85461785 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 879 24 32 0 0 chr9 38615546 38615577 -85460595 + AT_rich Low_complexity Low_complexity 1 31 0 1 879 2780 116 7 1 chr9 38615617 38616136 -85460036 + L1Md_F LINE L1 623 1146 -5578 1 879 3490 5 0 0 chr9 38616130 38616515 -85459657 - L1Md_A LINE L1 -41 5842 5458 1 879 6563 15 0 0 chr9 38616515 38617259 -85458913 + L1Md_A LINE L1 5839 6582 0 1 879 18944 80 4 3 chr9 38617275 38620012 -85456160 + L1Md_F LINE L1 1108 3847 -2036 1 879 3195 83 0 0 chr9 38620012 38620448 -85455724 - L1_Mm LINE L1 -1189 4694 4259 1 879 5288 63 1 0 chr9 38620445 38621145 -85455027 - L1Md_F LINE L1 -6466 1246 546 1 879 471 172 12 54 chr9 38621361 38621527 -85454645 - Lx9 LINE L1 -22 7622 7464 1 879 293 286 0 0 chr9 38624265 38624335 -85451837 - PB1D7 SINE Alu -50 70 1 1 879 24 53 0 0 chr9 38624643 38624681 -85451491 + AT_rich Low_complexity Low_complexity 1 38 0 1 879 26 0 0 0 chr9 38624774 38624800 -85451372 + AT_rich Low_complexity Low_complexity 1 26 0 1 879 220 76 57 57 chr9 38624949 38625019 -85451153 + A-rich Low_complexity Low_complexity 1 70 0 1 879 2493 211 121 0 chr9 38625063 38625602 -85450570 + Lx5 LINE L1 6296 6899 -151 1 879 561 96 0 0 chr9 38625688 38625782 -85450390 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 879 355 238 77 45 chr9 38625931 38626129 -85450043 - Lx7 LINE L1 -17 7679 7520 1 879 315 273 0 0 chr9 38626136 38626224 -85449948 - Lx7 LINE L1 -337 7359 7272 1 879 412 244 30 14 chr9 38626275 38626445 -85449727 - L1M2 LINE L1 -772 5519 5344 1 879 451 312 133 36 chr9 38626608 38627279 -85448893 + L1MC1 LINE L1 5565 6296 -37 1 879 271 378 0 0 chr9 38627324 38627422 -85448750 + PB1D10 SINE Alu 7 104 -13 1 879 231 330 0 138 chr9 38627743 38627866 -85448306 - RMER15 LTR ERVL -160 415 310 1 879 504 0 0 0 chr9 38628240 38628296 -85447876 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 879 342 0 0 0 chr9 38628455 38628493 -85447679 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 879 401 305 109 69 chr9 38628601 38629066 -85447106 - RLTR12B LTR ERVK -31 497 1 1 879 277 228 0 25 chr9 38629066 38629147 -85447025 - L1MA6 LINE L1 -109 6191 6113 1 879 186 43 0 0 chr9 38631344 38631367 -85444805 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 879 587 81 12 0 chr9 38631758 38631844 -85444328 + (TTTC)n Simple_repeat Simple_repeat 3 89 0 1 879 207 0 0 0 chr9 38631845 38631868 -85444304 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 879 719 311 5 0 chr9 38631870 38632066 -85444106 - Lx6 LINE L1 -41 7419 7223 1 879 704 221 118 19 chr9 38632077 38632289 -85443883 - Lx2B LINE L1 -4 6996 6764 1 879 521 307 109 5 chr9 38632316 38632509 -85443663 + B3 SINE B2 2 214 -2 1 879 4157 47 4 0 chr9 38632595 38633107 -85443065 + L1Md_F2 LINE L1 6069 6582 0 1 879 21 0 0 0 chr9 38633111 38633132 -85443040 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 354 45 0 0 chr9 38633245 38633289 -85442883 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 879 1073 121 6 6 chr9 38633289 38633445 -85442727 - B2_Mm2 SINE B2 -38 157 2 1 879 300 158 0 0 chr9 38634547 38634604 -85441568 + T-rich Low_complexity Low_complexity 1 57 0 1 879 21 0 0 0 chr9 38636643 38636664 -85439508 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 216 0 0 0 chr9 38637789 38637813 -85438359 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 879 356 291 126 9 chr9 38637909 38638020 -85438152 + MLT2C1 LTR ERVL 141 264 -133 1 879 21 82 0 0 chr9 38638107 38638156 -85438016 + AT_rich Low_complexity Low_complexity 1 49 0 1 879 3686 262 24 15 chr9 38638554 38639425 -85436747 - Lx5 LINE L1 -6 7044 6166 1 879 30 59 0 0 chr9 38639920 38639971 -85436201 + AT_rich Low_complexity Low_complexity 1 51 0 1 879 183 100 0 0 chr9 38640074 38640104 -85436068 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 879 327 191 0 0 chr9 38640104 38640172 -85436000 + GA-rich Low_complexity Low_complexity 2 69 0 1 879 1609 133 4 8 chr9 38640643 38640894 -85435278 + RLTR9E LTR ERVK 1 250 -159 1 879 366 189 0 13 chr9 38640993 38641068 -85435104 + RLTR45-int LTR ERVK 2091 2164 -5080 1 879 37909 30 1 0 chr9 38641430 38648271 -85427901 - L1Md_T LINE L1 0 6585 1 1 879 432 160 0 13 chr9 38648291 38648367 -85427805 - RLTR9E LTR ERVK -334 75 1 1 879 435 190 0 0 chr9 38648592 38648671 -85427501 - RLTR25A LTR ERVK -2 1026 948 1 879 1992 203 36 8 chr9 38648669 38649061 -85427111 - RLTR25A LTR ERVK -700 403 1 1 879 240 210 127 16 chr9 38649283 38649346 -85426826 - PB1D9 SINE Alu -48 72 3 1 879 271 238 22 121 chr9 38649346 38649411 -85426761 - RLTR25A LTR ERVK -524 579 524 1 879 1087 202 64 43 chr9 38649333 38649566 -85426606 - MT2B LTR ERVL -329 272 35 1 879 3248 167 112 60 chr9 38649421 38650141 -85426031 - ORR1A1-int LTR MaLR -1205 758 1 1 879 1197 267 24 21 chr9 38650145 38650362 -85425810 - ORR1A1 LTR MaLR -8 338 119 1 879 623 238 174 31 chr9 38650362 38650683 -85425489 - RLTR9A LTR ERVK -1 367 1 1 879 1197 267 24 21 chr9 38650683 38650802 -85425370 - ORR1A1 LTR MaLR -228 118 1 1 879 365 365 19 13 chr9 38650820 38650978 -85425194 + Lx8 LINE L1 7108 7266 -207 1 879 203 103 0 49 chr9 38651038 38651079 -85425093 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 879 292 73 0 52 chr9 38651281 38651339 -85424833 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1 879 22 35 0 0 chr9 38652188 38652217 -85423955 + AT_rich Low_complexity Low_complexity 1 29 0 1 879 264 120 0 0 chr9 38652662 38652712 -85423460 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 879 255 79 0 0 chr9 38652726 38652764 -85423408 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 879 570 322 5 19 chr9 38654208 38654417 -85421755 - B3 SINE B2 -8 208 3 1 879 1140 222 92 3 chr9 38655215 38655540 -85420632 + Lx9 LINE L1 7288 7641 -3 1 879 1106 283 42 11 chr9 38657751 38658105 -85418067 + Lx7 LINE L1 6973 7337 -359 1 879 21 0 0 0 chr9 38658177 38658198 -85417974 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 858 293 28 21 chr9 38658198 38658534 -85417638 + Lx7 LINE L1 7322 7680 -16 1 879 237 65 0 0 chr9 38658647 38658678 -85417494 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 879 21 0 0 0 chr9 38659001 38659022 -85417150 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 21 0 0 0 chr9 38659330 38659351 -85416821 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 1154 62 7 0 chr9 38661081 38661226 -85414946 + B1_Mm SINE Alu 2 147 0 1 879 182 128 0 25 chr9 38661229 38661269 -85414903 + A-rich Low_complexity Low_complexity 2 40 0 1 879 251 336 91 30 chr9 38661951 38662083 -85414089 - B1F SINE Alu -1 148 9 2 879 1006 111 0 0 chr9 38662128 38662272 -85413900 + B1_Mus1 SINE Alu 4 147 -1 2 879 713 335 22 13 chr9 38664028 38664345 -85411827 - Lx8 LINE L1 -375 7098 6779 2 879 24 0 0 0 chr9 38664660 38664684 -85411488 + AT_rich Low_complexity Low_complexity 1 24 0 2 879 1419 202 55 39 chr9 38664860 38665305 -85410867 - RMER17C LTR ERVK -519 439 16 2 879 303 301 61 14 chr9 38665715 38665863 -85410309 + L1MC LINE L1 4409 4563 -1583 2 880 243 0 0 0 chr9 38666406 38666433 -85409739 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 880 22 56 0 0 chr9 38667049 38667085 -85409087 + AT_rich Low_complexity Low_complexity 1 36 0 2 880 198 0 0 0 chr9 38667466 38667488 -85408684 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 880 524 149 172 8 chr9 38667772 38667894 -85408278 + Lx9 LINE L1 7347 7488 -156 2 880 423 0 0 0 chr9 38668280 38668327 -85407845 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 880 710 196 229 0 chr9 38669199 38669378 -85406794 + URR1A DNA MER1_type 7 226 0 2 880 381 362 62 50 chr9 38669395 38669555 -85406617 + RSINE1 SINE B4 4 165 0 2 880 2813 214 154 29 chr9 38669997 38670961 -85405211 - RMER12 LTR ERVK -135 1187 38 2 880 415 380 41 16 chr9 38671064 38671310 -85404862 + L1M5 LINE L1 4700 4951 -1195 2 880 325 289 91 54 chr9 38671995 38672236 -85403936 + L1MD LINE L1 5336 5585 -774 2 880 3933 140 219 11 chr9 38673137 38673951 -85402221 + RLTR13C1 LTR ERVK 1 983 0 2 880 202 271 0 20 chr9 38674989 38675038 -85401134 + polypurine Low_complexity Low_complexity 6 53 0 2 880 192 77 0 0 chr9 38675626 38675652 -85400520 + (A)n Simple_repeat Simple_repeat 1 26 0 2 880 461 213 16 8 chr9 38675718 38675841 -85400331 + Lx LINE L1 6526 6649 -5 2 880 267 79 0 0 chr9 38675953 38675991 -85400181 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 880 282 29 0 0 chr9 38676340 38676375 -85399797 + (T)n Simple_repeat Simple_repeat 1 35 0 2 880 38 0 0 0 chr9 38677238 38677276 -85398896 + AT_rich Low_complexity Low_complexity 1 38 0 2 880 189 0 0 0 chr9 38677501 38677522 -85398650 + (T)n Simple_repeat Simple_repeat 1 21 0 2 880 3263 270 50 9 chr9 38677678 38678524 -85397648 - Lx5 LINE L1 -5 7045 6166 2 880 22 70 0 0 chr9 38678756 38678799 -85397373 + AT_rich Low_complexity Low_complexity 1 43 0 2 880 291 28 0 0 chr9 38679152 38679188 -85396984 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 880 318 183 0 0 chr9 38679192 38679263 -85396909 + GA-rich Low_complexity Low_complexity 1 71 0 2 880 779 64 18 0 chr9 38679566 38679675 -85396497 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 2 880 502 35 0 0 chr9 38679677 38679735 -85396437 + L1Md_F3 LINE L1 6053 6110 -474 2 880 4916 184 104 15 chr9 38680117 38681130 -85395042 - RLTR25A LTR ERVK 0 1103 1 2 880 340 302 23 23 chr9 38681332 38681420 -85394752 - B1_Mur3 SINE Alu -59 90 3 2 880 1132 202 61 40 chr9 38681420 38681640 -85394532 - MT2B LTR ERVL -342 259 35 2 880 3045 186 112 19 chr9 38681491 38682188 -85393984 - ORR1A3-int LTR MaLR -1201 762 1 2 880 1380 231 14 70 chr9 38682188 38682413 -85393759 - ORR1A3 LTR MaLR 0 326 98 2 880 593 239 176 40 chr9 38682413 38682736 -85393436 - RLTR9A LTR ERVK -1 367 1 2 880 1380 231 14 70 chr9 38682736 38682855 -85393317 - ORR1A3 LTR MaLR -229 97 1 2 880 381 359 19 19 chr9 38682875 38683034 -85393138 + Lx8 LINE L1 7108 7266 -207 2 880 22 56 0 0 chr9 38683169 38683205 -85392967 + AT_rich Low_complexity Low_complexity 1 36 0 2 880 560 285 29 29 chr9 38683278 38683484 -85392688 - B3 SINE B2 -8 208 3 2 880 1023 231 83 3 chr9 38684278 38684603 -85391569 + Lx9 LINE L1 7291 7641 -3 2 880 1686 270 65 106 chr9 38686796 38687397 -85388775 + Lx7 LINE L1 6973 7544 -152 2 880 357 24 0 0 chr9 38687397 38687439 -85388733 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 2 880 1686 270 65 106 chr9 38687439 38687575 -85388597 + Lx7 LINE L1 7545 7679 -17 2 880 294 29 0 0 chr9 38687715 38687750 -85388422 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 880 3824 189 206 44 chr9 38687807 38687989 -85388183 + L1Md_F LINE L1 98 209 -6407 2 880 2979 124 42 63 chr9 38687989 38688512 -85387660 + RLTR1B LTR ERV1 1 512 0 2 880 24183 134 15 42 chr9 38688512 38693436 -85382736 + L1Md_F LINE L1 210 5058 -825 2 880 3811 176 18 45 chr9 38696613 38697067 -85379105 + Lx5 LINE L1 5109 5546 -331 2 880 2687 98 32 10 chr9 38697067 38697469 -85378703 - RLTR9F LTR ERVK -4 411 1 2 880 3811 188 40 35 chr9 38697469 38698182 -85377990 + Lx5 LINE L1 5547 6282 -768 2 880 596 247 0 91 chr9 38698180 38698367 -85377805 + Lx5 LINE L1 6685 6854 -204 2 880 2746 52 0 36 chr9 38698576 38698934 -85377238 + IAPLTR4 LTR ERVK 1 345 0 2 880 230 261 76 43 chr9 38699292 38699384 -85376788 + Arthur1 DNA Tip100 2707 2801 -1146 2 880 183 235 0 0 chr9 38701270 38701321 -85374851 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 880 4918 130 32 22 chr9 38701349 38702324 -85373848 + L1Md_A LINE L1 416 1401 -4482 2 880 1597 21 0 0 chr9 38702319 38702505 -85373667 - L1Md_A LINE L1 -637 5945 5760 2 880 2655 19 6 0 chr9 38702505 38702820 -85373352 + L1Md_A LINE L1 6266 6582 0 2 880 2294 71 6 0 chr9 38702821 38703159 -85373013 + L1Md_A LINE L1 1388 1727 -4156 2 880 38456 5 0 0 chr9 38704129 38709716 -85366456 + L1Md_A LINE L1 1 5586 -297 2 880 9026 2 0 0 chr9 38709716 38710712 -85365460 + L1Md_A LINE L1 5587 6582 0 2 880 28 0 0 0 chr9 38710966 38710994 -85365178 + AT_rich Low_complexity Low_complexity 1 28 0 2 880 312 27 0 0 chr9 38711879 38711916 -85364256 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 880 256 223 133 9 chr9 38712895 38713008 -85363164 - Lx9 LINE L1 -6 7638 7512 2 880 434 248 8 25 chr9 38713002 38713122 -85363050 + Lx9 LINE L1 6850 6967 -677 2 880 24 0 0 0 chr9 38713137 38713161 -85363011 + AT_rich Low_complexity Low_complexity 1 24 0 2 880 310 175 54 40 chr9 38713161 38713310 -85362862 + (TATAA)n Simple_repeat Simple_repeat 2 152 0 2 880 335 298 8 42 chr9 38713326 38713445 -85362727 + B3A SINE B2 67 181 -17 2 880 205 276 17 0 chr9 38713455 38713513 -85362659 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2 880 2634 0 0 0 chr9 38713877 38714170 -85362002 + L1Md_T LINE L1 6290 6582 0 2 880 249 33 0 0 chr9 38714193 38714223 -85361949 + (A)n Simple_repeat Simple_repeat 1 30 0 2 880 627 86 0 0 chr9 38714404 38714497 -85361675 + L1_Mus1 LINE L1 6475 6567 0 2 880 247 274 128 43 chr9 38715850 38715991 -85360181 + L1MEf LINE L1 758 910 -5332 2 880 759 213 24 0 chr9 38716307 38716471 -85359701 + URR1A DNA MER1_type 58 225 -1 2 880 258 355 40 23 chr9 38716327 38716490 -85359682 - CYRA11_Mm Unknown Y-chromosome -297 320 155 2 880 408 341 8 8 chr9 38716490 38716617 -85359555 + RSINE1 SINE B4 4 130 -35 2 880 278 316 57 11 chr9 38716761 38716937 -85359235 + L1MEf LINE L1 4488 4671 -1475 2 880 303 308 48 102 chr9 38717191 38717377 -85358795 + L1MEf LINE L1 4840 5014 -1132 2 880 5015 148 30 3 chr9 38717377 38718237 -85357935 + Lx2 LINE L1 6115 6997 0 2 880 303 308 48 102 chr9 38718237 38718256 -85357916 + L1MEf LINE L1 5015 5034 -1112 2 880 23 86 0 0 chr9 38718271 38718329 -85357843 + AT_rich Low_complexity Low_complexity 1 58 0 2 880 242 304 13 0 chr9 38718443 38718522 -85357650 - ID2 SINE ID -2 81 2 2 880 1029 278 75 42 chr9 38719032 38719513 -85356659 + MYSERV-int LTR ERVK 4244 4740 -1810 2 880 7734 57 7 4 chr9 38719517 38720498 -85355674 - L1Md_F2 LINE L1 -12 6570 5587 2 880 224 227 0 0 chr9 38720834 38720878 -85355294 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2 880 3168 225 35 3 chr9 38721301 38721933 -85354239 + Lx5 LINE L1 6398 7049 -1 2 880 316 348 47 24 chr9 38722283 38722495 -85353677 + L1MEf LINE L1 5265 5481 -698 2 880 234 352 0 27 chr9 38722570 38722643 -85353529 - tRNA-Ala-GCG tRNA tRNA 0 75 5 2 880 4651 62 18 5 chr9 38723454 38724065 -85352107 + L1Md_F2 LINE L1 5961 6579 -3 2 880 31002 79 1 5 chr9 38724258 38729465 -85346707 + L1Md_F2 LINE L1 441 5586 -297 2 880 8103 46 3 0 chr9 38729465 38730457 -85345715 + L1Md_F2 LINE L1 5587 6581 -1 2 880 312 143 0 0 chr9 38730493 38730549 -85345623 + (A)n Simple_repeat Simple_repeat 1 56 0 2 880 1078 234 68 6 chr9 38730646 38730982 -85345190 + Lx9 LINE L1 7288 7644 0 2 880 5511 162 6 4 chr9 38731142 38732136 -85344036 - L1_Mm LINE L1 -91 5792 4797 2 880 1782 269 49 31 chr9 38732586 38732901 -85343271 + Lx7 LINE L1 7016 7354 -342 2 880 2583 122 35 0 chr9 38732901 38733301 -85342871 + Lx3_Mus LINE L1 6591 7004 -5 2 880 1782 269 49 31 chr9 38733301 38733653 -85342519 + Lx7 LINE L1 7355 7695 -1 2 880 215 140 0 20 chr9 38733767 38733818 -85342354 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 2 880 22 0 0 0 chr9 38738971 38738993 -85337179 + AT_rich Low_complexity Low_complexity 1 22 0 2 880 461 352 37 20 chr9 38739174 38739473 -85336699 - Lx8 LINE L1 -390 7083 6780 2 880 749 79 9 0 chr9 38741046 38741160 -85335012 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 2 880 213 39 0 0 chr9 38741575 38741601 -85334571 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 880 2885 62 3 3 chr9 38741605 38741977 -85334195 - L1_Mus1 LINE L1 -5 6562 6191 2 880 793 69 0 0 chr9 38741977 38742079 -85334093 + L1_Mus1 LINE L1 6090 6191 -376 2 880 4495 174 36 12 chr9 38742118 38743519 -85332653 + L1Md_F LINE L1 98 1429 -4454 2 880 686 198 12 23 chr9 38743526 38743697 -85332475 + Lx2 LINE L1 6827 6995 -2 2 880 21 0 0 0 chr9 38743816 38743837 -85332335 + AT_rich Low_complexity Low_complexity 1 21 0 2 880 5885 62 1 0 chr9 38743837 38744574 -85331598 - L1_Mus1 LINE L1 -2 6565 5828 2 880 2834 137 0 0 chr9 38744575 38745042 -85331130 - L1Md_F LINE L1 -294 5592 5126 2 880 195 42 0 0 chr9 38745249 38745273 -85330899 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 2 880 180 0 0 0 chr9 38747300 38747320 -85328852 + (T)n Simple_repeat Simple_repeat 1 20 0 2 880 23568 128 9 15 chr9 38747697 38752124 -85324048 - L1Md_F LINE L1 -746 5140 648 2 880 358 294 96 0 chr9 38752131 38752267 -85323905 - L1Md_F LINE L1 -5793 826 678 2 880 495 309 26 60 chr9 38752284 38752609 -85323563 - L1VL1 LINE L1 -5927 491 5 2 880 449 208 0 0 chr9 38752619 38752739 -85323433 - Lx9 LINE L1 -7 7637 7518 2 880 266 213 179 8 chr9 38753793 38753916 -85322256 + Lx9 LINE L1 7346 7489 -155 2 880 307 276 43 8 chr9 38754146 38754263 -85321909 + Lx6 LINE L1 7328 7448 -12 2 880 292 73 36 18 chr9 38754841 38754897 -85321275 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 3 880 28 0 0 0 chr9 38755298 38755326 -85320846 + AT_rich Low_complexity Low_complexity 1 28 0 3 880 2114 134 42 106 chr9 38756039 38756351 -85319821 + BGLII_Mus LTR ERVK 1 288 -134 3 880 483 0 0 0 chr9 38756351 38756413 -85319759 - L1Md_A LINE L1 0 6582 6521 3 880 2114 134 42 106 chr9 38756413 38756551 -85319621 + BGLII_Mus LTR ERVK 289 422 0 3 880 2190 227 60 58 chr9 38756801 38757486 -85318686 - RMER13B LTR ERVK -4 904 79 3 880 1536 211 24 10 chr9 38757486 38757961 -85318211 + L1VL4 LINE L1 549 1033 -2526 3 880 5772 151 29 69 chr9 38757965 38759514 -85316658 + L1_Mur1 LINE L1 4 1481 -4405 3 880 1553 203 11 6 chr9 38759515 38759862 -85316310 - L1_Mur2 LINE L1 -856 5021 4673 3 880 643 289 174 46 chr9 38759925 38760316 -85315856 + RLTR45 LTR ERVK 42 482 0 3 880 1415 263 31 53 chr9 38760317 38760863 -85315309 + RLTR45-int LTR ERVK 1 534 -6710 3 880 609 202 0 0 chr9 38761720 38761844 -85314328 + RLTR45-int LTR ERVK 569 692 -6552 3 880 495 248 0 0 chr9 38762200 38762317 -85313855 + RLTR45-int LTR ERVK 695 811 -6433 3 880 383 185 7 118 chr9 38762556 38762691 -85313481 + RLTR45-int LTR ERVK 912 1031 -6213 3 880 1841 332 67 61 chr9 38763018 38765188 -85310984 + RNERVK23-int LTR ERVK 2407 4829 -3388 3 880 249 319 14 0 chr9 38765188 38765260 -85310912 + 7SK RNA RNA 35 107 -224 3 880 1841 332 67 61 chr9 38765260 38766044 -85310128 + RNERVK23-int LTR ERVK 4830 5707 -2510 3 880 36134 31 0 0 chr9 38766223 38772856 -85303316 - L1Md_T LINE L1 0 6585 1 3 880 299 250 34 54 chr9 38773150 38773298 -85302874 + RNERVK23-int LTR ERVK 6193 6337 -1880 3 880 280 261 34 0 chr9 38773223 38773311 -85302861 + RLTR6-int LTR ERV1 6161 6251 -1527 3 880 3305 42 5 2 chr9 38773486 38773894 -85302278 - L1Md_F2 LINE L1 -12 6570 6162 3 880 956 33 0 0 chr9 38773894 38774014 -85302158 + L1Md_F2 LINE L1 5924 6043 -539 3 880 619 332 4 4 chr9 38774215 38774475 -85301697 + RLTR45-int LTR ERVK 1333 1592 -5652 3 880 607 282 31 75 chr9 38774614 38775039 -85301133 + RLTR6-int LTR ERV1 7065 7470 -308 3 880 1062 282 33 8 chr9 38774870 38775376 -85300796 + ETnERV2-int LTR ERVK 7385 7761 -456 3 880 1594 233 20 64 chr9 38775447 38775901 -85300271 + ETnERV2-int LTR ERVK 6647 7080 -326 3 880 655 284 40 65 chr9 38776016 38776410 -85299762 + RLTR45 LTR ERVK 45 482 0 3 880 7805 166 16 4 chr9 38776410 38777948 -85298224 - L1_Mur2 LINE L1 -1198 4679 3124 3 880 1436 167 26 0 chr9 38777952 38778216 -85297956 + L1_Mur2 LINE L1 2756 3026 -2851 3 880 535 203 25 8 chr9 38778206 38778325 -85297847 + L1_Mur2 LINE L1 4422 4542 -1335 3 880 29 70 0 0 chr9 38778360 38778417 -85297755 + AT_rich Low_complexity Low_complexity 1 57 0 3 880 2204 250 53 38 chr9 38778549 38779260 -85296912 + Lx7 LINE L1 6974 7695 -1 3 880 231 321 60 35 chr9 38782703 38782819 -85293353 - B1F SINE Alu 0 149 31 3 880 509 349 70 18 chr9 38784660 38785001 -85291171 - Lx8 LINE L1 -377 7096 6738 3 880 33 56 0 0 chr9 38786402 38786456 -85289716 + AT_rich Low_complexity Low_complexity 1 54 0 3 880 26 64 0 0 chr9 38787035 38787082 -85289090 + AT_rich Low_complexity Low_complexity 1 47 0 3 880 269 119 0 43 chr9 38787340 38787410 -85288762 + T-rich Low_complexity Low_complexity 1 67 0 3 880 437 209 0 30 chr9 38787678 38787811 -85288361 - Lx9 LINE L1 -4 7640 7512 3 880 375 250 28 9 chr9 38787811 38787907 -85288265 + Lx9 LINE L1 6856 6950 -694 3 880 4644 40 3 3 chr9 38787907 38788485 -85287687 - L1Md_F3 LINE L1 -2 6582 6005 3 880 377 43 0 0 chr9 38788485 38788531 -85287641 + L1Md_F3 LINE L1 5886 5931 -653 3 880 204 158 0 0 chr9 38788586 38788624 -85287548 + A-rich Low_complexity Low_complexity 1 38 0 3 880 189 107 0 0 chr9 38788795 38788823 -85287349 + (CATA)n Simple_repeat Simple_repeat 3 30 0 3 880 330 26 0 0 chr9 38788872 38788911 -85287261 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 3 880 672 163 192 5 chr9 38791117 38791320 -85284852 + Lx9 LINE L1 7395 7635 -9 3 880 2920 175 67 8 chr9 38791581 38792294 -85283878 + Lx4A LINE L1 6202 7048 -10 3 880 195 42 0 0 chr9 38792302 38792326 -85283846 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 3 880 1120 93 0 6 chr9 38792329 38792491 -85283681 - L1_Mus3 LINE L1 -282 6356 6196 3 880 773 131 13 40 chr9 38792492 38792643 -85283529 + L1_Mus3 LINE L1 6469 6615 -23 3 880 552 109 40 33 chr9 38792718 38792870 -85283302 + (TCTCTG)n Simple_repeat Simple_repeat 2 154 0 3 880 486 33 0 0 chr9 38792871 38792931 -85283241 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 880 905 170 133 10 chr9 38793768 38793964 -85282208 + URR1A DNA MER1_type 7 226 0 3 880 221 405 18 0 chr9 38793984 38794095 -85282077 + RSINE1 SINE B4 6 118 -47 3 880 180 111 0 0 chr9 38794099 38794126 -85282046 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 880 270 0 0 0 chr9 38794126 38794156 -85282016 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 880 234 306 85 40 chr9 38794486 38794663 -85281509 + L1MD LINE L1 4725 4909 -1237 3 880 269 275 86 20 chr9 38795169 38795321 -85280851 + L1MD LINE L1 5336 5497 -862 3 880 6829 98 4 3 chr9 38796328 38797309 -85278863 - L1_Mus1 LINE L1 -62 5821 4840 3 13 5545 59 25 0 chr9 38797310 38798020 -85278152 + L1_Mus1 LINE L1 5839 6566 -1 3 881 303 200 11 11 chr9 38798311 38798402 -85277770 + L1MCa LINE L1 1828 1918 -4590 3 881 756 336 84 6 chr9 38798474 38798830 -85277342 - Lx8 LINE L1 -720 6753 6370 3 881 229 209 23 0 chr9 38798838 38798881 -85277291 - MTD LTR MaLR -2 417 374 3 881 430 232 150 56 chr9 38798883 38799203 -85276969 - L1_Mur2 LINE L1 -1194 4686 4337 3 881 723 104 0 0 chr9 38799234 38799340 -85276832 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 3 881 861 267 75 65 chr9 38799342 38799438 -85276734 - L1_Mur2 LINE L1 -1540 4340 4253 3 881 799 114 107 0 chr9 38799438 38799569 -85276603 - B1_Mus1 SINE Alu -1 147 3 3 881 866 267 75 65 chr9 38799569 38799952 -85276220 - L1_Mur2 LINE L1 -1628 4252 3855 3 881 443 316 32 5 chr9 38799968 38800156 -85276016 - L1_Mur2 LINE L1 -4119 1761 1569 3 881 22 70 0 0 chr9 38800216 38800259 -85275913 + AT_rich Low_complexity Low_complexity 1 43 0 3 881 247 271 143 50 chr9 38800369 38800509 -85275663 - Lx7 LINE L1 -333 7363 7211 3 881 981 222 4 24 chr9 38803642 38803896 -85272276 + L1_Mur3 LINE L1 4170 4418 -1462 3 881 192 152 0 0 chr9 38803997 38804030 -85272142 + (TAA)n Simple_repeat Simple_repeat 1 33 0 3 881 378 114 0 0 chr9 38804125 38804195 -85271977 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 881 1042 105 0 0 chr9 38804348 38804491 -85271681 + B1_Mus1 SINE Alu 1 143 -5 3 881 486 0 0 0 chr9 38804494 38804548 -85271624 + (CAAAA)n Simple_repeat Simple_repeat 4 57 0 3 881 3381 238 71 35 chr9 38804645 38805597 -85270575 + Lx5 LINE L1 5929 6915 -135 3 881 23 0 0 0 chr9 38806710 38806733 -85269439 + AT_rich Low_complexity Low_complexity 1 23 0 3 881 232 312 25 0 chr9 38806925 38807005 -85269167 - ID2 SINE ID 0 83 2 3 881 299 360 28 35 chr9 38808265 38808409 -85267763 + B4A SINE B4 127 269 -23 3 881 396 167 9 9 chr9 38808424 38808549 -85267623 + (CA)n Simple_repeat Simple_repeat 1 125 0 3 881 7038 106 7 0 chr9 38808781 38810422 -85265750 - L1_Mus1 LINE L1 0 6567 4915 3 881 11003 114 11 20 chr9 38810432 38812190 -85263982 - L1_Mus1 LINE L1 -1845 4038 2296 3 881 305 0 0 0 chr9 38812238 38812282 -85263890 - L1Md_T LINE L1 0 6582 6539 3 881 23 92 0 0 chr9 38812851 38812916 -85263256 + AT_rich Low_complexity Low_complexity 1 65 0 3 881 265 351 14 0 chr9 38813450 38813524 -85262648 - ID2 SINE ID -4 79 5 3 881 2593 296 71 86 chr9 38815109 38816471 -85259701 - Lx5 LINE L1 -5 7045 5704 3 881 278 266 0 0 chr9 38816471 38816535 -85259637 - MTC LTR MaLR -357 64 1 3 881 2073 120 3 53 chr9 38817069 38817411 -85258761 - ORR1A2 LTR MaLR -2 325 1 3 881 5189 135 7 4 chr9 38817750 38818578 -85257594 - L1_Mus3 LINE L1 -7 6631 5801 3 881 5318 149 4 6 chr9 38818580 38820048 -85256124 + L1_Mus4 LINE L1 4946 6412 -224 3 881 211 130 0 148 chr9 38820216 38820231 -85255941 - B1_Mur4 SINE Alu -8 142 129 3 881 1925 145 3 58 chr9 38820231 38820575 -85255597 - ORR1A2 LTR MaLR -2 325 1 3 881 258 176 268 34 chr9 38820575 38820657 -85255515 - B1F2 SINE Alu -17 130 5 3 881 1108 117 30 25 chr9 38820982 38821183 -85254989 - Lx3_Mus LINE L1 -8 7001 6800 3 881 2588 215 10 0 chr9 38821183 38821690 -85254482 - Lx4A LINE L1 -612 6446 5935 3 881 3393 137 5 2 chr9 38821687 38822258 -85253914 + L1_Mur2 LINE L1 4987 5559 -318 3 881 270 241 0 33 chr9 38822317 38822407 -85253765 + L1MCa LINE L1 1832 1918 -4590 3 881 702 348 85 17 chr9 38822479 38822833 -85253339 - Lx8 LINE L1 -720 6753 6376 3 881 235 244 116 47 chr9 38822846 38822932 -85253240 - MTC LTR MaLR -2 419 328 3 881 1119 285 117 10 chr9 38822939 38823658 -85252514 - L1_Mur3 LINE L1 -1453 4690 3859 3 881 419 328 73 61 chr9 38823723 38823970 -85252202 + RLTR16 LTR ERVK 23 272 -233 3 881 370 271 48 0 chr9 38824291 38824457 -85251715 - L1_Mur3 LINE L1 -4157 1723 1550 3 881 307 303 30 0 chr9 38824677 38824776 -85251396 - Lx7 LINE L1 -358 7338 7237 3 881 21 57 0 0 chr9 38825119 38825154 -85251018 + AT_rich Low_complexity Low_complexity 1 35 0 3 881 273 4 0 12 chr9 38825169 38825216 -85250956 - L1_Mus2 LINE L1 0 6566 6529 3 881 244 136 23 0 chr9 38827743 38827787 -85248385 + L1_Mur3 LINE L1 4170 4214 -1666 3 881 266 238 0 56 chr9 38827809 38827916 -85248256 + Lx5 LINE L1 6942 7042 -8 3 881 230 346 0 114 chr9 38827923 38828011 -85248161 + B4 SINE B4 215 292 0 3 881 215 281 0 0 chr9 38828015 38828072 -85248100 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 881 3171 254 59 31 chr9 38828396 38829288 -85246884 + Lx5 LINE L1 5995 6911 -139 3 881 2159 332 65 67 chr9 38832337 38833649 -85242523 - Lx4B LINE L1 -21 7037 5729 3 881 391 128 15 3 chr9 38833658 38833737 -85242435 - MTC LTR MaLR -340 79 1 3 881 22 70 0 0 chr9 38833942 38833985 -85242187 + AT_rich Low_complexity Low_complexity 1 43 0 3 881 655 216 0 21 chr9 38834189 38834331 -85241841 - B1_Mm SINE Alu 0 147 9 3 881 298 335 65 32 chr9 38834724 38834909 -85241263 + L1MCa LINE L1 198 388 -6120 3 881 250 303 24 73 chr9 38835041 38835123 -85241049 + B4 SINE B4 194 271 -21 3 881 1809 223 45 14 chr9 38835315 38835738 -85240434 + BGLII_B LTR ERVK 4 439 -2 3 881 446 75 32 11 chr9 38836044 38836138 -85240034 + (CAAAAA)n Simple_repeat Simple_repeat 2 97 0 3 881 537 16 0 0 chr9 38836398 38836460 -85239712 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 881 25513 81 36 11 chr9 38836635 38840975 -85235197 + L1Md_A LINE L1 445 4886 -997 3 881 1486 295 76 48 chr9 38841401 38841762 -85234410 + MYSERV6-int LTR ERVK 452 842 -8117 3 881 261 0 0 0 chr9 38841762 38841791 -85234381 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 881 333 0 0 0 chr9 38841792 38841829 -85234343 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 881 1486 295 76 48 chr9 38841829 38842178 -85233994 + MYSERV6-int LTR ERVK 843 1184 -7775 3 881 284 242 0 57 chr9 38842582 38842687 -85233485 + MYSERV6-int LTR ERVK 1106 1204 -1638 3 881 4983 184 38 41 chr9 38842763 38843128 -85233044 + MYSERV16_I-int LTR ERVK 5 356 -1970 4 881 1232 104 22 6 chr9 38843128 38843311 -85232861 + B2_Mm2 SINE B2 2 187 -8 4 881 4983 184 38 41 chr9 38843311 38844036 -85232136 + MYSERV16_I-int LTR ERVK 357 1091 -1235 4 881 38191 58 12 15 chr9 38844096 38850377 -85225795 - L1Md_T LINE L1 -1 6581 263 4 881 317 137 0 0 chr9 38850378 38850429 -85225743 - L1Md_F LINE L1 -6291 228 178 4 881 1495 165 60 7 chr9 38850717 38851016 -85225156 - Lx LINE L1 -1 6653 6339 4 881 5332 148 21 3 chr9 38851016 38852157 -85224015 + Lx LINE L1 4913 6075 -579 4 881 5150 184 53 14 chr9 38852157 38853362 -85222810 + MYSERV16_I-int LTR ERVK 1075 2326 0 4 881 1792 220 41 28 chr9 38853362 38853797 -85222375 + BGLII_B LTR ERVK 1 441 0 4 881 1107 212 12 0 chr9 38855751 38856001 -85220171 + L1_Mur3 LINE L1 4168 4420 -1460 4 881 225 229 29 68 chr9 38855999 38856102 -85220070 + Lx5 LINE L1 6943 7041 -9 4 881 351 0 0 0 chr9 38856142 38856181 -85219991 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 881 417 129 0 0 chr9 38856183 38856253 -85219919 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 881 3251 241 88 40 chr9 38856482 38857449 -85218723 + Lx5 LINE L1 5961 6973 -77 4 881 22 35 0 0 chr9 38857449 38857478 -85218694 + AT_rich Low_complexity Low_complexity 1 29 0 4 881 931 39 148 0 chr9 38857601 38857729 -85218443 + B1_Mm SINE Alu 1 147 0 4 881 7882 67 0 1 chr9 38857876 38858889 -85217283 + L1Md_F2 LINE L1 4575 5586 -297 4 881 8109 42 2 2 chr9 38858889 38859873 -85216299 + L1Md_F2 LINE L1 5587 6570 -12 4 881 28 0 0 0 chr9 38860436 38860464 -85215708 + AT_rich Low_complexity Low_complexity 1 28 0 4 881 25 0 0 0 chr9 38862474 38862499 -85213673 + AT_rich Low_complexity Low_complexity 1 25 0 4 881 210 37 0 0 chr9 38862512 38862539 -85213633 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 881 2562 130 77 0 chr9 38862953 38863354 -85212818 - L1_Mus4 LINE L1 -313 6323 5892 4 881 303 61 20 0 chr9 38863354 38863403 -85212769 - L1_Mus2 LINE L1 0 6566 6517 4 881 2218 92 35 0 chr9 38863405 38863721 -85212451 - L1_Mm LINE L1 -282 5601 5275 4 881 521 81 0 0 chr9 38863717 38863791 -85212381 - L1_Mus4 LINE L1 -740 5896 5823 4 881 6435 34 0 0 chr9 38863816 38864575 -85211597 - L1Md_T LINE L1 0 6582 5824 4 881 7319 19 2 0 chr9 38864575 38865424 -85210748 + L1Md_T LINE L1 4970 5820 -63 4 881 1045 128 6 0 chr9 38865421 38865585 -85210587 - L1_Mus4 LINE L1 -800 5836 5672 4 881 1842 161 23 9 chr9 38865586 38865931 -85210241 + Lx LINE L1 6305 6654 0 4 881 603 174 17 0 chr9 38865931 38866046 -85210126 + URR1B DNA MER1_type 86 202 -23 4 881 345 47 0 0 chr9 38866046 38866089 -85210083 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 881 27 29 0 0 chr9 38867207 38867241 -85208931 + AT_rich Low_complexity Low_complexity 1 34 0 4 881 22 0 0 0 chr9 38868375 38868397 -85207775 + AT_rich Low_complexity Low_complexity 1 22 0 4 881 2008 325 52 21 chr9 38868475 38869456 -85206716 + Lx9 LINE L1 6607 7617 -27 4 881 31 58 0 0 chr9 38869467 38869519 -85206653 + AT_rich Low_complexity Low_complexity 1 52 0 4 881 793 41 0 39 chr9 38869811 38869938 -85206234 + (TA)n Simple_repeat Simple_repeat 2 123 0 4 881 255 313 78 46 chr9 38870851 38871147 -85205025 + L1M5 LINE L1 5425 5729 -435 4 881 228 376 20 10 chr9 38871226 38871328 -85204844 - RSINE1 SINE B4 -34 131 29 4 881 21 0 0 0 chr9 38871587 38871608 -85204564 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 30 27 0 0 chr9 38872668 38872705 -85203467 + AT_rich Low_complexity Low_complexity 1 37 0 4 881 41 21 0 0 chr9 38872906 38872954 -85203218 + AT_rich Low_complexity Low_complexity 1 48 0 4 881 23078 173 28 25 chr9 38873088 38875075 -85201097 + L1VL4 LINE L1 559 2543 -3340 4 881 322 20 60 0 chr9 38875075 38875125 -85201047 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 4 881 23078 162 26 12 chr9 38875125 38875707 -85200465 + L1VL4 LINE L1 2544 3142 -2741 4 881 212 0 36 0 chr9 38875707 38875735 -85200437 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 881 23078 162 26 12 chr9 38875735 38877322 -85198850 + L1VL4 LINE L1 3143 4736 -1147 4 881 183 42 0 0 chr9 38877322 38877346 -85198826 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 881 23078 162 26 12 chr9 38877346 38878340 -85197832 + L1VL4 LINE L1 4737 5751 -132 4 881 212 102 67 22 chr9 38878340 38878430 -85197742 + (TTAA)n Simple_repeat Simple_repeat 4 97 0 4 881 2268 168 30 2 chr9 38879510 38879939 -85196233 - BGLII_B LTR ERVK 0 441 1 4 881 1009 219 0 5 chr9 38880359 38880575 -85195597 - Lx2B LINE L1 -2 6998 6784 4 881 3998 148 18 25 chr9 38880575 38881336 -85194836 - MusHAL1 LINE L1 -642 2070 1315 4 881 21 0 0 0 chr9 38881392 38881413 -85194759 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 3612 75 6 4 chr9 38882484 38882978 -85193194 + RLTR1C LTR ERV1 1 495 -8 4 881 2456 256 17 19 chr9 38883449 38884043 -85192129 - Lx5 LINE L1 0 7050 6458 4 881 2320 166 40 0 chr9 38884043 38884714 -85191458 - L1_Mur2 LINE L1 -4356 1521 818 4 881 230 346 8 0 chr9 38887390 38887520 -85188652 - L1MA10 LINE L1 -27 6307 6177 4 881 43 35 0 0 chr9 38888789 38888846 -85187326 + AT_rich Low_complexity Low_complexity 1 57 0 4 881 562 189 29 63 chr9 38889230 38889398 -85186774 - Lx7 LINE L1 -146 7550 7388 4 881 444 82 0 0 chr9 38889398 38889459 -85186713 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 881 562 258 26 8346 chr9 38889459 38889493 -85186679 - Lx7 LINE L1 -309 7387 7382 4 881 1083 251 57 4 chr9 38889894 38890158 -85186014 - ORR1C2 LTR MaLR -12 372 95 4 881 323 374 29 7 chr9 38890193 38890333 -85185839 - ORR1C2 LTR MaLR -231 143 1 4 881 269 115 68 11 chr9 38890409 38890497 -85185675 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 881 21 0 0 0 chr9 38890641 38890662 -85185510 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 217 262 24 0 chr9 38891671 38891755 -85184417 + (TA)n Simple_repeat Simple_repeat 1 86 0 4 881 411 21 0 0 chr9 38891758 38891806 -85184366 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 881 216 0 0 0 chr9 38891806 38891829 -85184343 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 881 984 121 0 0 chr9 38892200 38892373 -85183799 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 4 881 3386 93 37 8 chr9 38892482 38893060 -85183112 + L1_Mus2 LINE L1 6059 6566 0 4 881 32079 94 4 11 chr9 38893081 38898733 -85177439 + L1Md_F2 LINE L1 35 5586 -297 4 881 7925 54 0 0 chr9 38898734 38899818 -85176354 + L1Md_F2 LINE L1 5588 6582 0 4 881 385 253 21 21 chr9 38899824 38899921 -85176251 - RLTR20B1 LTR ERVK -464 99 3 4 881 1048 98 0 0 chr9 38900099 38900242 -85175930 + B1_Mus1 SINE Alu 2 144 -4 4 881 213 39 0 0 chr9 38900245 38900271 -85175901 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 881 441 0 0 0 chr9 38900309 38900358 -85175814 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 881 516 215 73 46 chr9 38900685 38900883 -85175289 + Lx3C LINE L1 6789 7000 0 4 881 821 303 83 32 chr9 38900895 38901338 -85174834 + Lx9 LINE L1 7002 7467 -177 4 881 195 204 0 0 chr9 38901378 38901427 -85174745 + A-rich Low_complexity Low_complexity 1 49 0 4 881 754 187 0 0 chr9 38901428 38901562 -85174610 + Lx LINE L1 6177 6310 -344 4 881 956 178 106 5 chr9 38901574 38901655 -85174517 + Lx LINE L1 6436 6516 -138 4 881 186 43 0 0 chr9 38901655 38901678 -85174494 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 4 881 956 178 106 5 chr9 38901678 38901794 -85174378 + Lx LINE L1 6517 6653 -1 4 881 31 88 0 0 chr9 38902472 38902552 -85173620 + AT_rich Low_complexity Low_complexity 1 80 0 4 881 809 268 122 40 chr9 38903231 38903884 -85172288 - L1M2 LINE L1 -1399 4744 4033 4 881 21 0 0 0 chr9 38903884 38903905 -85172267 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 180 27 81 0 chr9 38904774 38904811 -85171361 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 881 257 0 30 0 chr9 38905432 38905465 -85170707 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4 881 737 188 159 20 chr9 38905538 38905739 -85170433 + ORR1A4 LTR MaLR 101 329 0 4 881 495 0 0 0 chr9 38905761 38905816 -85170356 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 881 2908 186 9 4 chr9 38906598 38907160 -85169012 - L1_Mus4 LINE L1 -570 5313 4749 4 881 6444 118 60 4 chr9 38907155 38908387 -85167785 + L1_Mus4 LINE L1 5332 6633 -3 4 881 2359 122 11 3 chr9 38908483 38908860 -85167312 - L1_Mus3 LINE L1 0 6638 6259 4 881 2500 120 13 0 chr9 38908862 38909237 -85166935 + L1_Mus3 LINE L1 5888 6267 -371 4 881 270 356 53 64 chr9 38909679 38909850 -85166322 - Lx8 LINE L1 -238 7235 7067 4 881 510 280 50 29 chr9 38909865 38910166 -85166006 + Lx9 LINE L1 5621 5969 -1675 4 881 932 345 82 36 chr9 38910386 38911132 -85165040 + Lx9 LINE L1 6469 7248 -396 4 881 405 0 0 0 chr9 38911232 38911277 -85164895 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 4 881 22 70 0 0 chr9 38911433 38911476 -85164696 + AT_rich Low_complexity Low_complexity 1 43 0 4 881 1131 71 0 0 chr9 38913329 38913470 -85162702 + B1_Mus2 SINE Alu 1 141 -6 4 881 198 0 0 0 chr9 38913472 38913494 -85162678 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 4 881 1677 185 3 0 chr9 38913584 38913909 -85162263 - L1_Mur2 LINE L1 -2112 3765 3440 4 881 24123 69 2 2 chr9 38913902 38917836 -85158336 - L1Md_F2 LINE L1 0 6582 2649 4 881 2095 80 4 0 chr9 38917834 38918108 -85158064 - L1Md_F2 LINE L1 -5767 849 575 4 881 2347 190 62 2 chr9 38918108 38918640 -85157532 - L1_Mur2 LINE L1 -2423 3454 2891 4 881 1961 290 98 51 chr9 38918665 38918985 -85157187 + Lx5 LINE L1 6264 6631 -419 4 881 405 0 0 0 chr9 38918985 38919030 -85157142 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 881 1961 290 98 51 chr9 38919030 38919460 -85156712 + Lx5 LINE L1 6632 7050 0 4 881 1048 111 0 0 chr9 38919863 38920007 -85156165 + B1_Mus1 SINE Alu 1 144 -4 4 881 405 0 0 0 chr9 38920008 38920053 -85156119 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 4 881 421 310 68 7 chr9 38920614 38920760 -85155412 - RSINE1 SINE B4 -8 157 3 4 881 886 115 12 0 chr9 38921467 38921632 -85154540 + (TC)n Simple_repeat Simple_repeat 2 168 0 4 881 24 0 0 0 chr9 38921739 38921763 -85154409 + AT_rich Low_complexity Low_complexity 1 24 0 4 881 23 86 0 0 chr9 38921955 38922013 -85154159 + AT_rich Low_complexity Low_complexity 1 58 0 4 881 690 272 10 10 chr9 38922532 38922725 -85153447 + RNERVK23-int LTR ERVK 7622 7814 -403 4 881 457 233 52 46 chr9 38923463 38923616 -85152556 + RNLTR23 LTR ERVK 489 642 0 4 881 3313 279 32 22 chr9 38923616 38924768 -85151404 - RNERVK23-int LTR ERVK -5049 3168 2005 4 881 1080 279 13 6 chr9 38925288 38925602 -85150570 - RNERVK23-int LTR ERVK -7720 497 182 4 881 461 266 12 48 chr9 38925797 38925963 -85150209 - RNLTR23 LTR ERVK -2 640 481 4 881 199 35 69 0 chr9 38926488 38926517 -85149655 + L4 LINE RTE 160 190 -1839 4 881 632 265 89 8 chr9 38926843 38927094 -85149078 - Lx2A1 LINE L1 -1107 5901 5598 4 881 225 159 0 0 chr9 38927120 38927164 -85149008 + (CTTA)n Simple_repeat Simple_repeat 4 47 0 5 881 397 68 13 27 chr9 38927275 38927350 -85148822 + (TTTTTG)n Simple_repeat Simple_repeat 2 75 0 5 881 2668 214 25 28 chr9 38927471 38928116 -85148056 - RMER6A LTR ERVK -2 754 112 5 882 1146 193 33 72 chr9 38928814 38929149 -85147023 - RLTRETN_Mm LTR ERVK 0 322 1 5 882 291 278 49 65 chr9 38929222 38929345 -85146827 - MTE-int LTR MaLR -1432 148 28 5 882 182 62 0 30 chr9 38929457 38929469 -85146703 + (TTTTG)n Simple_repeat Simple_repeat 2 13 0 5 882 276 53 0 0 chr9 38929469 38929507 -85146665 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 882 182 62 0 30 chr9 38929507 38929527 -85146645 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 882 2188 223 72 25 chr9 38929588 38930199 -85145973 + Lx2B LINE L1 6338 6977 -23 5 882 2930 194 11 2 chr9 38930210 38930751 -85145421 - Lx4B LINE L1 -449 6609 6064 5 882 3139 247 118 34 chr9 38930753 38931739 -85144433 - Lx5 LINE L1 -4 7046 5978 5 882 478 304 199 19 chr9 38931749 38932061 -85144111 + RLTR9A LTR ERVK 1 368 0 5 882 2529 177 102 45 chr9 38932448 38933366 -85142806 + RMER16-int LTR ERVK 857 1353 -4053 5 882 5534 167 28 14 chr9 38933364 38934432 -85141740 + MurERV4_19-int LTR ERVK 3213 4295 -1485 5 882 24 32 0 0 chr9 38934454 38934485 -85141687 + AT_rich Low_complexity Low_complexity 1 31 0 5 882 1013 122 0 0 chr9 38934946 38935093 -85141079 - B1_Mus1 SINE Alu 0 148 2 5 882 2024 239 42 27 chr9 38936252 38936321 -85139851 - RLTR11A LTR ERVK 0 528 459 5 882 498 17 0 0 chr9 38936321 38936380 -85139792 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 882 2024 239 42 27 chr9 38936380 38936830 -85139342 - RLTR11A LTR ERVK -70 458 1 5 882 23 0 0 0 chr9 38937480 38937503 -85138669 + AT_rich Low_complexity Low_complexity 1 23 0 5 882 201 132 0 0 chr9 38937529 38937567 -85138605 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 882 250 28 0 53 chr9 38937846 38937884 -85138288 + B1_Mus2 SINE Alu 110 145 -2 5 882 23 68 0 0 chr9 38939520 38939564 -85136608 + AT_rich Low_complexity Low_complexity 1 44 0 5 882 23 54 0 0 chr9 38940457 38940494 -85135678 + AT_rich Low_complexity Low_complexity 1 37 0 5 882 649 345 20 36 chr9 38940623 38940927 -85135245 - Lx8 LINE L1 -896 6577 6279 5 882 282 302 28 19 chr9 38940928 38941036 -85135136 + Lx7 LINE L1 7004 7112 -584 5 882 248 344 92 15 chr9 38941963 38942223 -85133949 - Lx8 LINE L1 -235 7238 6959 5 882 223 189 19 0 chr9 38942290 38942343 -85133829 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 882 16803 219 40 40 chr9 38942984 38944644 -85131528 - Lx2B LINE L1 0 7000 5297 5 882 2919 48 3 0 chr9 38944644 38944997 -85131175 + IAPEY2_LTR LTR ERVK 1 354 -3 5 882 16803 206 29 78 chr9 38944997 38945731 -85130441 - Lx2B LINE L1 -581 5296 4627 5 882 1006 110 14 0 chr9 38945731 38945876 -85130296 - B1_Mus1 SINE Alu 0 148 2 5 882 16803 208 30 72 chr9 38945876 38949805 -85126367 - Lx2B LINE L1 -1251 4626 868 5 882 27 62 0 0 chr9 38951481 38951529 -85124643 + AT_rich Low_complexity Low_complexity 1 48 0 5 882 358 154 33 0 chr9 38952953 38953044 -85123128 - Lx3A LINE L1 0 6981 6888 5 882 333 262 170 18 chr9 38953290 38953508 -85122664 - L1_Rod LINE L1 -15 5832 5582 5 882 390 74 0 0 chr9 38953523 38953577 -85122595 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 5 882 234 0 0 0 chr9 38953579 38953605 -85122567 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 5 882 625 272 94 29 chr9 38953761 38954102 -85122070 + RLTR20B3 LTR ERVK 3 341 -200 5 882 6128 157 6 1 chr9 38954108 38955446 -85120726 - L1_Mus4 LINE L1 -559 6077 4732 5 882 7326 67 14 1 chr9 38955480 38956622 -85119550 - L1Md_F2 LINE L1 -12 6570 5408 5 882 2439 182 18 6 chr9 38956619 38957127 -85119045 - L1_Mur2 LINE L1 -1144 4733 4220 5 882 3060 173 16 2 chr9 38957128 38957672 -85118500 + Lx LINE L1 6093 6644 -10 5 882 5011 112 6 16 chr9 38957682 38957931 -85118241 + L1_Mur1 LINE L1 4638 4884 -1002 5 882 1821 157 68 33 chr9 38957931 38958326 -85117846 - RLTR9E LTR ERVK 0 409 1 5 882 5011 112 6 16 chr9 38958326 38958885 -85117287 + L1_Mur1 LINE L1 4885 5438 -448 5 882 4398 165 22 14 chr9 38958892 38959679 -85116493 + Lx3A LINE L1 6187 6979 -2 5 882 21 0 0 0 chr9 38959710 38959731 -85116441 + AT_rich Low_complexity Low_complexity 1 21 0 5 882 248 241 0 0 chr9 38959732 38959786 -85116386 + RLTR20B3 LTR ERVK 367 420 -157 5 882 1070 71 21 0 chr9 38959786 38959927 -85116245 + B1_Mm SINE Alu 4 147 0 5 882 284 94 0 19 chr9 38959930 38959984 -85116188 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 5 882 390 244 274 87 chr9 38960073 38960383 -85115789 + RLTR9A LTR ERVK 1 368 0 5 882 300 27 0 0 chr9 38960404 38960441 -85115731 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 882 2808 196 21 54 chr9 38960635 38961333 -85114839 - RMER6A LTR ERVK 0 756 3 5 882 215 176 59 0 chr9 38961507 38961558 -85114614 + T-rich Low_complexity Low_complexity 3 56 0 5 882 1390 229 105 28 chr9 38961778 38962178 -85113994 - BGLII_B LTR ERVK -10 431 1 5 882 415 327 71 13 chr9 38962427 38962653 -85113519 - MTE-int LTR MaLR -1298 282 44 5 882 498 248 7 7 chr9 38963029 38963306 -85112866 + (CCCTAA)n Simple_repeat Simple_repeat 1 277 0 5 882 188 267 8 0 chr9 38963320 38963440 -85112732 + (CCCTAA)n Simple_repeat Simple_repeat 6 126 0 5 882 987 121 29 29 chr9 38963631 38963801 -85112371 + B2_Mm1t SINE B2 2 171 -22 5 882 495 0 0 0 chr9 38963805 38963860 -85112312 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 882 295 328 24 57 chr9 38964165 38964411 -85111761 + Lx9 LINE L1 7097 7334 -310 5 882 224 275 43 0 chr9 38964539 38964608 -85111564 + (CATA)n Simple_repeat Simple_repeat 4 75 0 5 882 1096 338 60 35 chr9 38965338 38966208 -85109964 - Lx9 LINE L1 -146 7498 6607 5 882 24 100 0 0 chr9 38966302 38966382 -85109790 + AT_rich Low_complexity Low_complexity 1 80 0 5 882 21 0 0 0 chr9 38966425 38966446 -85109726 + AT_rich Low_complexity Low_complexity 1 21 0 5 882 21 57 0 0 chr9 38967105 38967140 -85109032 + AT_rich Low_complexity Low_complexity 1 35 0 5 882 1119 177 14 26 chr9 38967613 38967857 -85108315 - L1_Mur1 LINE L1 -485 5688 5430 5 882 1842 169 3 3 chr9 38968815 38969118 -85107054 + RLTR10E LTR ERVK 1 303 -8 5 882 2251 111 0 9 chr9 38969125 38969452 -85106720 + MMERVK10C-int LTR ERVK 14 337 -7244 5 882 579 164 33 0 chr9 38969452 38969574 -85106598 + MMERVK10C-int LTR ERVK 747 872 -6709 5 882 1186 156 154 12 chr9 38969557 38969803 -85106369 + IAPEY3-int LTR ERVK 323 603 -4803 5 882 447 323 31 31 chr9 38969885 38970249 -85105923 + IAPEY3-int LTR ERVK 1342 1566 -6015 5 882 319 130 56 0 chr9 38970266 38970320 -85105852 + IAP-d-int LTR ERVK 447 503 -6039 5 882 1318 134 112 0 chr9 38970320 38970544 -85105628 + IAP-d-int LTR ERVK 5007 5255 -1287 5 882 4084 117 10 1 chr9 38970544 38971224 -85104948 + IAPEY3-int LTR ERVK 6965 7680 0 5 882 1959 155 3 3 chr9 38971224 38971535 -85104637 + RLTR10E LTR ERVK 1 311 0 5 882 203 195 24 0 chr9 38971798 38971839 -85104333 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 5 882 243 0 0 0 chr9 38971839 38971866 -85104306 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 882 235 210 32 0 chr9 38972275 38972337 -85103835 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 882 2631 101 8 8 chr9 38972686 38973086 -85103086 + L1_Mus4 LINE L1 6237 6636 0 5 882 285 221 58 0 chr9 38973578 38973664 -85102508 - Lx2 LINE L1 0 6997 6907 5 882 376 333 8 17 chr9 38975998 38976117 -85100055 + RSINE1 SINE B4 3 120 -45 5 882 497 389 36 22 chr9 38977223 38977588 -85098584 - Lx8 LINE L1 -826 6647 6278 5 882 230 309 42 11 chr9 38977609 38977704 -85098468 + Lx7 LINE L1 7025 7122 -574 5 882 251 290 92 31 chr9 38977867 38978136 -85098036 - L1M5 LINE L1 -464 5715 5429 5 882 2291 258 19 5 chr9 38978164 38978752 -85097420 - Lx3C LINE L1 -5 6971 6376 5 882 441 0 0 0 chr9 38978752 38978801 -85097371 + (TTA)n Simple_repeat Simple_repeat 3 51 0 5 882 4203 116 14 3 chr9 38978801 38979432 -85096740 - L1Md_F2 LINE L1 -24 6558 5921 5 882 2779 53 0 0 chr9 38979432 38979770 -85096402 + L1Md_F2 LINE L1 5588 5925 -657 5 882 2518 208 34 25 chr9 38979767 38980378 -85095794 - Lx2B LINE L1 -617 6383 5767 5 882 21 36 0 0 chr9 38980449 38980477 -85095695 + AT_rich Low_complexity Low_complexity 1 28 0 5 882 364 381 78 9 chr9 38980735 38981079 -85095093 - Lx8 LINE L1 -147 7326 6959 5 882 374 85 17 0 chr9 38981165 38981224 -85094948 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 882 1156 99 0 6 chr9 38981465 38981637 -85094535 + L1_Mus1 LINE L1 6397 6567 0 5 882 6041 221 26 35 chr9 38981651 38983836 -85092336 - Lx3C LINE L1 -334 6642 4550 5 882 4961 194 11 8 chr9 38983845 38984891 -85091281 - Lx3C LINE L1 -1558 4319 3271 5 882 1811 210 76 22 chr9 38984883 38985451 -85090721 - Lx3C LINE L1 -5978 1006 209 5 882 466 348 49 7 chr9 38985567 38985871 -85090301 + Lx9 LINE L1 6607 6923 -721 5 882 24 0 0 0 chr9 38985967 38985991 -85090181 + AT_rich Low_complexity Low_complexity 1 24 0 5 882 631 354 34 31 chr9 38986069 38986547 -85089625 + Lx9 LINE L1 6947 7425 -219 5 882 27 0 0 0 chr9 38986717 38986744 -85089428 + AT_rich Low_complexity Low_complexity 1 27 0 5 882 237 323 0 0 chr9 38987456 38987534 -85088638 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 882 741 41 0 0 chr9 38987534 38987631 -85088541 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 882 237 323 0 0 chr9 38987631 38987648 -85088524 + (TA)n Simple_repeat Simple_repeat 1 17 0 5 882 1101 150 16 0 chr9 38987811 38987998 -85088174 + B2_Mm1t SINE B2 4 193 0 5 882 228 143 0 0 chr9 38988000 38988042 -85088130 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 5 882 328 286 40 88 chr9 38988047 38988273 -85087899 - Lx9 LINE L1 -351 7293 7079 5 882 397 272 7 0 chr9 38988714 38989156 -85087016 + (TTAGGG)n Simple_repeat Simple_repeat 1 445 0 5 882 334 278 0 40 chr9 38990338 38990439 -85085733 - Lx8 LINE L1 -190 7283 7187 5 882 328 354 29 0 chr9 38990598 38990773 -85085399 + Lx8 LINE L1 6586 6765 -708 5 882 21 0 0 0 chr9 38991136 38991157 -85085015 + AT_rich Low_complexity Low_complexity 1 21 0 5 882 25 31 0 0 chr9 38991589 38991621 -85084551 + AT_rich Low_complexity Low_complexity 1 32 0 5 882 679 330 83 72 chr9 38993187 38993290 -85082882 - Lx9 LINE L1 -279 7365 7264 5 882 285 51 0 0 chr9 38993290 38993329 -85082843 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 882 679 330 81 59 chr9 38993329 38994103 -85082069 - Lx9 LINE L1 -381 7263 6327 5 882 2267 108 49 82 chr9 38994213 38994618 -85081554 + RLTR9C LTR ERVK 2 393 0 5 882 422 239 40 75 chr9 38994747 38994946 -85081226 + ETnERV2-int LTR ERVK 108 299 -4545 6 882 715 82 18 35 chr9 38994937 38995051 -85081121 + ETnERV2-int LTR ERVK 1075 1186 -6220 6 882 1438 153 96 21 chr9 38995058 38995403 -85080769 + ETnERV2-int LTR ERVK 1371 1690 -5716 6 882 1968 188 172 24 chr9 38995409 38995978 -85080194 + ETnERV2-int LTR ERVK 2369 3021 -4385 6 882 262 153 24 153 chr9 38995968 38996053 -85080119 + ETnERV2-int LTR ERVK 1992 2065 -2779 6 882 1150 145 0 57 chr9 38996063 38996290 -85079882 + RLTR13D1 LTR ERVK 437 650 -156 6 882 4104 168 23 24 chr9 38996859 38997817 -85078355 + ETnERV2-int LTR ERVK 2397 4085 -3321 6 882 566 272 103 36 chr9 38997957 38998210 -85077962 - Lx9 LINE L1 -1107 5901 5598 5 882 216 200 0 0 chr9 38998236 38998296 -85077876 + (CTTA)n Simple_repeat Simple_repeat 4 63 0 6 882 233 123 13 52 chr9 38998406 38998483 -85077689 + T-rich Low_complexity Low_complexity 2 75 0 6 882 2483 232 23 28 chr9 38998603 38999251 -85076921 - RMER6A LTR ERVK 0 756 112 6 882 258 267 52 26 chr9 38999283 38999360 -85076812 - MTEb LTR MaLR -298 81 3 6 882 282 284 48 65 chr9 39000008 39000132 -85076040 - MTE-int LTR MaLR -1431 149 28 1 882 218 188 31 15 chr9 39000204 39000269 -85075903 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2 882 1552 175 17 7 chr9 39000269 39000556 -85075616 - Lx4B LINE L1 -700 6358 6069 3 882 3288 247 101 37 chr9 39000558 39001577 -85074595 - Lx5 LINE L1 -4 7046 5963 4 882 519 275 191 56 chr9 39001577 39001901 -85074271 + RLTR9A LTR ERVK 1 368 0 5 882 8131 48 1 0 chr9 39002114 39003413 -85072759 - L1Md_F2 LINE L1 -12 6570 5271 6 882 5267 66 1 0 chr9 39003415 39004098 -85072074 - L1Md_F2 LINE L1 -949 4934 4251 6 882 1685 180 191 35 chr9 39004256 39004269 -85071903 + RMER16-int LTR ERVK 250 262 -5144 7 882 279 0 0 0 chr9 39004269 39004300 -85071872 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 882 567 0 0 0 chr9 39004300 39004362 -85071810 + (GA)n Simple_repeat Simple_repeat 2 64 0 9 882 2648 160 117 39 chr9 39004362 39005280 -85070892 + RMER16-int LTR ERVK 263 1980 -5426 7 882 5393 169 37 12 chr9 39005278 39006338 -85069834 + MurERV4_19-int LTR ERVK 3213 4298 -1482 1 882 21 57 0 0 chr9 39006351 39006386 -85069786 + AT_rich Low_complexity Low_complexity 1 35 0 1 882 947 145 0 0 chr9 39006846 39006991 -85069181 - B1_Mus1 SINE Alu -2 146 2 1 882 7145 91 1 2 chr9 39007250 39008241 -85067931 + L1Md_F3 LINE L1 4597 5586 -297 1 882 7576 68 1 5 chr9 39008241 39009227 -85066945 + L1Md_F3 LINE L1 5587 6568 -16 1 882 746 159 0 0 chr9 39009230 39009362 -85066810 + L1_Mur2 LINE L1 3713 3844 -2033 1 882 2018 255 45 8 chr9 39010233 39010305 -85065867 - RLTR11A LTR ERVK 0 528 457 1 882 323 45 0 22 chr9 39010305 39010351 -85065821 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 882 2018 255 45 8 chr9 39010351 39010787 -85065385 - RLTR11A LTR ERVK -72 456 1 1 882 28 48 0 0 chr9 39011424 39011466 -85064706 + AT_rich Low_complexity Low_complexity 1 42 0 1 882 21 0 0 0 chr9 39011563 39011584 -85064588 + AT_rich Low_complexity Low_complexity 1 21 0 1 882 240 35 0 0 chr9 39011760 39011789 -85064383 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 882 26 0 0 0 chr9 39011971 39011997 -85064175 + AT_rich Low_complexity Low_complexity 1 26 0 2 882 692 365 56 27 chr9 39014326 39014734 -85061438 - Lx8 LINE L1 -775 6698 6279 2 882 243 301 47 37 chr9 39014735 39014842 -85061330 + Lx7 LINE L1 7004 7111 -585 2 882 217 97 0 0 chr9 39015073 39015104 -85061068 - B3 SINE B2 -184 32 2 2 882 25 0 0 0 chr9 39015459 39015484 -85060688 + AT_rich Low_complexity Low_complexity 1 25 0 2 882 231 360 90 12 chr9 39015844 39016089 -85060083 - Lx8 LINE L1 -259 7214 6951 2 882 21 0 0 0 chr9 39016111 39016132 -85060040 + AT_rich Low_complexity Low_complexity 1 21 0 2 882 205 171 0 0 chr9 39016150 39016191 -85059981 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 882 18615 211 36 20 chr9 39016799 39019159 -85057013 - Lx2B LINE L1 -5 6995 4633 2 882 998 116 0 20 chr9 39019159 39019309 -85056863 - B1_Mus1 SINE Alu 0 148 2 2 882 18615 206 33 28 chr9 39019309 39020657 -85055515 - Lx2B LINE L1 -1254 4632 3314 2 882 504 0 0 0 chr9 39020657 39020713 -85055459 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 882 18615 206 38 25 chr9 39020713 39023024 -85053148 - Lx2B LINE L1 -2573 3313 903 2 882 26 0 0 0 chr9 39024754 39024780 -85051392 + AT_rich Low_complexity Low_complexity 1 26 0 3 882 21 0 0 31 chr9 39026194 39026207 -85049965 + AT_rich Low_complexity Low_complexity 1 13 0 3 882 5447 176 19 17 chr9 39026207 39027277 -85048895 - Lx3A LINE L1 0 6981 5915 3 882 795 21 0 0 chr9 39027277 39027370 -85048802 + (TTC)n Simple_repeat Simple_repeat 2 94 0 3 882 5447 176 19 17 chr9 39027370 39027409 -85048763 - Lx3A LINE L1 -1067 5914 5871 3 882 21 0 0 31 chr9 39027409 39027427 -85048745 + AT_rich Low_complexity Low_complexity 1 18 0 3 882 732 249 94 8 chr9 39027658 39027925 -85048247 - L1_Rod LINE L1 -10 5837 5548 3 882 534 16 0 0 chr9 39027928 39027991 -85048181 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 882 555 258 131 69 chr9 39028253 39028563 -85047609 + RLTR20A LTR ERVK 36 341 -200 3 882 3070 120 2 72 chr9 39028569 39028723 -85047449 - L1_Mus4 LINE L1 -559 6077 5924 3 882 985 105 0 0 chr9 39028723 39028856 -85047316 + B1_Mus2 SINE Alu 1 133 -14 4 882 7896 177 12 21 chr9 39028856 39030544 -85045628 - L1_Mus4 LINE L1 -713 5923 4257 3 882 340 189 21 53 chr9 39030546 39030641 -85045531 - L1_Mus4 LINE L1 -1568 4315 4224 3 882 239 98 39 0 chr9 39031475 39031526 -85044646 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 4 882 1211 54 0 0 chr9 39031529 39031676 -85044496 - B1_Mm SINE Alu 0 147 1 4 882 1240 86 69 0 chr9 39032533 39032559 -85043613 - B2_Mm2 SINE B2 -8 187 162 4 882 465 19 0 0 chr9 39032559 39032613 -85043559 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 882 1240 86 69 0 chr9 39032613 39032760 -85043412 - B2_Mm2 SINE B2 -34 161 3 4 882 1182 39 19 0 chr9 39032772 39032928 -85043244 - L1Md_F2 LINE L1 0 6582 6424 4 882 299 368 8 17 chr9 39033027 39033146 -85043026 + RSINE1 SINE B4 3 120 -45 4 882 31 26 0 0 chr9 39033210 39033248 -85042924 + AT_rich Low_complexity Low_complexity 1 38 0 4 882 755 98 8 0 chr9 39033560 39033683 -85042489 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 4 882 8249 37 0 4 chr9 39033687 39034768 -85041404 - L1Md_F3 LINE L1 -17 6567 5491 4 882 339 24 0 0 chr9 39034768 39034810 -85041362 + L1_Mm LINE L1 2084 2125 -3758 5 882 180 97 0 0 chr9 39034810 39034841 -85041331 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 882 619 350 65 43 chr9 39035466 39035861 -85040311 - Lx8 LINE L1 -994 6702 6300 5 882 356 294 78 67 chr9 39036120 39036439 -85039733 - L1M5 LINE L1 -413 5751 5431 5 882 24 0 0 0 chr9 39036456 39036480 -85039692 + AT_rich Low_complexity Low_complexity 1 24 0 5 882 4032 129 51 0 chr9 39036526 39037435 -85038737 + L1Md_F LINE L1 489 1453 -4430 5 882 5001 105 3 54 chr9 39037433 39038906 -85037266 - L1Md_F LINE L1 -4108 1775 381 5 882 5275 122 6 89 chr9 39038898 39039921 -85036251 - L1_Mur1 LINE L1 -304 5582 4645 5 882 3151 185 4 5 chr9 39039921 39040482 -85035690 - Lx LINE L1 -3 6651 6092 5 882 8290 166 19 4 chr9 39040487 39042303 -85033869 + L1_Mus4 LINE L1 4231 6077 -559 5 882 614 260 104 28 chr9 39042309 39042599 -85033573 - RLTR20B3 LTR ERVK -201 340 54 6 882 218 200 0 0 chr9 39042727 39042767 -85033405 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 6 882 1223 35 15 10 chr9 39042891 39043090 -85033082 + (TAGA)n Simple_repeat Simple_repeat 1 199 0 6 882 640 271 46 25 chr9 39043091 39043375 -85032797 + L1_Rod LINE L1 5548 5837 -10 6 882 26 0 0 0 chr9 39043599 39043625 -85032547 + AT_rich Low_complexity Low_complexity 1 26 0 6 882 5600 166 34 9 chr9 39043626 39043664 -85032508 + Lx3A LINE L1 5872 5909 -1072 6 882 225 65 0 0 chr9 39043664 39043695 -85032477 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 882 5600 166 34 9 chr9 39043695 39044733 -85031439 + Lx3A LINE L1 5910 6974 -7 6 882 21 0 0 0 chr9 39045019 39045040 -85031132 + AT_rich Low_complexity Low_complexity 1 21 0 6 882 27 73 0 0 chr9 39046158 39046213 -85029959 + AT_rich Low_complexity Low_complexity 1 55 0 6 882 10052 203 170 8 chr9 39047276 39052405 -85023767 + Lx2B LINE L1 798 7000 0 6 882 212 158 18 0 chr9 39053064 39053121 -85023051 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 882 23 0 0 0 chr9 39053152 39053175 -85022997 + AT_rich Low_complexity Low_complexity 1 23 0 7 882 341 306 107 61 chr9 39053181 39053442 -85022730 + Lx8 LINE L1 6942 7214 -259 7 882 23 54 0 0 chr9 39053669 39053706 -85022466 + AT_rich Low_complexity Low_complexity 1 37 0 7 882 21 57 0 0 chr9 39053811 39053846 -85022326 + AT_rich Low_complexity Low_complexity 1 35 0 7 882 23 33 0 0 chr9 39054298 39054328 -85021844 + AT_rich Low_complexity Low_complexity 1 30 0 7 882 400 316 0 8 chr9 39054752 39054870 -85021302 - RSINE1 SINE B4 -46 119 3 7 882 1687 238 59 22 chr9 39056212 39056649 -85019523 + RLTR11A LTR ERVK 3 456 -72 7 882 531 0 0 0 chr9 39056649 39056708 -85019464 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 882 324 0 0 0 chr9 39056708 39056743 -85019429 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 882 1682 239 55 18 chr9 39056743 39056811 -85019361 + RLTR11A LTR ERVK 457 526 -2 8 882 24 53 0 0 chr9 39057945 39057983 -85018189 + AT_rich Low_complexity Low_complexity 1 38 0 8 882 21 0 0 0 chr9 39058299 39058320 -85017852 + AT_rich Low_complexity Low_complexity 1 21 0 8 882 28 0 0 0 chr9 39058609 39058637 -85017535 + AT_rich Low_complexity Low_complexity 1 28 0 8 882 21 36 0 0 chr9 39058651 39058679 -85017493 + AT_rich Low_complexity Low_complexity 1 28 0 8 882 2031 136 9 21 chr9 39058720 39059058 -85017114 - MurERV4_19-int LTR ERVK -1482 4298 3965 8 110 10138 166 30 6 chr9 39059062 39059656 -85016516 - MurERV4_19-int LTR ERVK -1920 3860 3186 8 883 315 0 0 0 chr9 39059656 39059691 -85016481 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 883 10138 171 43 6 chr9 39059691 39061228 -85014944 - MurERV4_19-int LTR ERVK -2595 3185 1601 8 883 2085 186 8 3 chr9 39061228 39061606 -85014566 + Lx4B LINE L1 6227 6606 -452 8 883 2031 225 99 49 chr9 39061607 39062242 -85013930 - Lx2B LINE L1 -4 6996 6330 8 883 2175 218 12 32 chr9 39062474 39063039 -85013133 + RMER6A LTR ERVK 203 756 0 8 883 225 147 26 26 chr9 39063157 39063234 -85012938 + A-rich Low_complexity Low_complexity 2 78 0 9 883 657 275 113 66 chr9 39063258 39063685 -85012487 + Lx9 LINE L1 5429 5844 -3 9 883 630 344 57 42 chr9 39063959 39064449 -85011723 + Lx9 LINE L1 6327 6973 -671 9 883 245 29 29 0 chr9 39064706 39064740 -85011432 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 9 883 37 39 0 0 chr9 39066411 39066462 -85009710 + AT_rich Low_complexity Low_complexity 1 51 0 9 883 21 0 0 0 chr9 39066901 39066922 -85009250 + AT_rich Low_complexity Low_complexity 1 21 0 9 883 251 337 21 21 chr9 39067356 39067453 -85008719 - Lx7 LINE L1 -1016 6680 6584 9 883 394 321 0 28 chr9 39067617 39067758 -85008414 + Lx8 LINE L1 7184 7320 -153 9 883 22 35 0 0 chr9 39068882 39068911 -85007261 + AT_rich Low_complexity Low_complexity 1 29 0 9 883 204 236 0 0 chr9 39069040 39069129 -85007043 + (CCCTAA)n Simple_repeat Simple_repeat 2 90 0 9 883 360 250 0 0 chr9 39069157 39069333 -85006839 + (CCCTAA)n Simple_repeat Simple_repeat 5 180 0 9 883 906 110 0 29 chr9 39069423 39069563 -85006609 + B1_Mus2 SINE Alu 2 137 -10 9 883 396 0 0 0 chr9 39069563 39069607 -85006565 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 883 289 311 8 76 chr9 39070059 39070191 -85005981 + Lx9 LINE L1 7104 7226 -418 1 883 1260 103 11 0 chr9 39070441 39070626 -85005546 - B2_Mm1t SINE B2 -3 190 4 1 883 203 170 21 0 chr9 39070802 39070849 -85005323 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 883 556 333 56 54 chr9 39071705 39072072 -85004100 - Lx9 LINE L1 -146 7498 7118 1 883 3097 42 39 0 chr9 39072072 39072453 -85003719 + MTA_Mm LTR MaLR 1 396 0 1 883 6927 89 18 76 chr9 39072456 39073617 -85002555 + MTA_Mm-int LTR MaLR 4 1097 -1 1 883 2924 66 39 0 chr9 39073618 39073999 -85002173 + MTA_Mm LTR MaLR 1 396 0 1 883 556 333 56 54 chr9 39073999 39074146 -85002026 - Lx9 LINE L1 -527 7117 6979 1 883 23 33 0 0 chr9 39074173 39074203 -85001969 + AT_rich Low_complexity Low_complexity 1 30 0 1 883 29 0 0 0 chr9 39074253 39074282 -85001890 + AT_rich Low_complexity Low_complexity 1 29 0 1 883 297 0 0 0 chr9 39074369 39074402 -85001770 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 883 288 0 0 0 chr9 39074402 39074433 -85001739 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 883 593 319 54 16 chr9 39074444 39074702 -85001470 - Lx9 LINE L1 -740 6904 6637 1 883 502 231 0 0 chr9 39074847 39074955 -85001217 + Lx3C LINE L1 209 316 -6668 1 883 2177 140 5 34 chr9 39075035 39075420 -85000752 + Lx3C LINE L1 681 1054 -5930 1 883 9626 203 26 12 chr9 39075420 39077607 -84998565 + Lx3C LINE L1 1837 4053 -1833 1 883 908 171 24 9 chr9 39077613 39077825 -84998347 + Lx3C LINE L1 5083 5297 -580 1 883 2879 72 0 5 chr9 39077814 39078190 -84997982 - L1_Mus2 LINE L1 -479 6087 5714 1 883 3405 95 10 4 chr9 39078190 39078678 -84997494 + L1_Mus2 LINE L1 6076 6566 0 1 883 3819 254 21 39 chr9 39078679 39080496 -84995676 + Lx3C LINE L1 5286 6996 -1 1 883 468 105 0 0 chr9 39081081 39081157 -84995015 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 883 266 215 50 12 chr9 39081665 39081745 -84994427 + L1M5 LINE L1 5633 5715 -729 1 883 386 333 33 39 chr9 39082037 39082218 -84993954 + Lx8 LINE L1 6298 6477 -996 1 883 24 77 0 0 chr9 39082597 39082649 -84993523 + AT_rich Low_complexity Low_complexity 1 52 0 1 883 26 0 0 0 chr9 39083278 39083304 -84992868 + AT_rich Low_complexity Low_complexity 1 26 0 1 883 971 95 7 0 chr9 39084049 39084186 -84991986 + B1_Mus1 SINE Alu 2 139 -9 1 883 248 0 31 0 chr9 39084186 39084218 -84991954 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 883 375 177 0 0 chr9 39084664 39084743 -84991429 + Lx2 LINE L1 6918 6996 -1 1 883 220 258 34 0 chr9 39085571 39085660 -84990512 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 883 448 95 12 12 chr9 39086093 39086178 -84989994 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 1 883 389 226 78 18 chr9 39086896 39087063 -84989109 + Lx9 LINE L1 7468 7644 0 1 883 1401 198 0 0 chr9 39087464 39087712 -84988460 + L1_Mur1 LINE L1 5430 5677 -209 1 883 413 408 0 0 chr9 39089104 39089288 -84986884 - Lx8 LINE L1 -185 7288 7105 1 883 660 301 43 5 chr9 39089298 39089505 -84986667 + Lx8 LINE L1 6536 6750 -723 1 883 182 62 0 30 chr9 39090201 39090234 -84985938 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 883 579 352 75 17 chr9 39090343 39090635 -84985537 + MTE-int LTR MaLR 44 352 -1228 1 883 719 212 32 111 chr9 39091230 39091447 -84984725 + RMER6A LTR ERVK 62 261 -495 1 883 369 0 0 0 chr9 39091487 39091528 -84984644 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 1 883 21 71 0 0 chr9 39091681 39091723 -84984449 + AT_rich Low_complexity Low_complexity 1 42 0 1 883 628 343 65 31 chr9 39092349 39092671 -84983501 + MTE-int LTR MaLR 22 354 -1226 1 883 1480 230 52 63 chr9 39092857 39093180 -84982992 + BGLII_B LTR ERVK 1 315 -126 1 883 2387 64 12 9 chr9 39093180 39093513 -84982659 - L1_Mus2 LINE L1 0 6566 6233 1 883 1480 230 52 63 chr9 39093513 39093635 -84982537 + BGLII_B LTR ERVK 316 441 0 1 883 2708 198 6 103 chr9 39094088 39094803 -84981369 + RMER6A LTR ERVK 112 756 0 1 883 243 239 0 90 chr9 39094806 39094884 -84981288 + MTEb LTR MaLR 75 145 -234 1 883 1321 278 81 11 chr9 39094942 39094991 -84981181 - RLTR20B3 LTR ERVK -44 533 472 1 883 180 0 0 0 chr9 39094991 39095011 -84981161 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 883 1321 278 81 11 chr9 39095011 39095416 -84980756 - RLTR20B3 LTR ERVK -106 471 48 1 883 836 256 69 114 chr9 39095492 39096000 -84980172 + L1_Rod LINE L1 5363 5847 0 1 883 36 94 0 0 chr9 39097600 39097706 -84978466 + AT_rich Low_complexity Low_complexity 1 106 0 1 883 22 0 0 0 chr9 39098186 39098208 -84977964 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 7037 87 13 6 chr9 39098266 39099296 -84976876 - L1_Mus3 LINE L1 0 6638 5630 1 883 18090 216 41 57 chr9 39100169 39101999 -84974173 + Lx2B LINE L1 695 2559 -3327 1 883 234 0 0 0 chr9 39101999 39102025 -84974147 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 883 18090 202 29 59 chr9 39102025 39102454 -84973718 + Lx2B LINE L1 2560 2892 -2994 1 883 599 0 0 14 chr9 39102454 39102526 -84973646 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 1 883 18090 202 29 59 chr9 39102526 39104358 -84971814 + Lx2B LINE L1 2893 4640 -1246 1 883 183 42 0 0 chr9 39104358 39104382 -84971790 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 883 18090 207 45 40 chr9 39104382 39106150 -84970022 + Lx2B LINE L1 4641 6476 -524 1 883 23 33 0 0 chr9 39108150 39108180 -84967992 + AT_rich Low_complexity Low_complexity 1 30 0 1 883 9872 174 37 9 chr9 39108205 39111248 -84964924 - MurERV4_19-int LTR ERVK -1482 4298 1171 1 883 20440 128 11 71 chr9 39111248 39118305 -84957867 - L1Md_F2 LINE L1 0 6582 391 1 883 4767 214 98 8 chr9 39118305 39119392 -84956780 - MurERV4_19-int LTR ERVK -4596 1184 1 1 883 1533 252 36 83 chr9 39119394 39119887 -84956285 - RMER19C LTR ERVK -2 609 140 1 883 4966 225 64 13 chr9 39119888 39121503 -84954669 + Lx5 LINE L1 5319 7039 -11 1 883 3134 177 6 2 chr9 39121508 39122045 -84954127 + Lx4B LINE L1 6068 6606 -452 1 883 2264 228 52 32 chr9 39122042 39122699 -84953473 - Lx2B LINE L1 -1 6999 6330 1 883 617 322 19 9 chr9 39122770 39122983 -84953189 + Lx8 LINE L1 6536 6750 -723 1 883 339 374 130 5 chr9 39123811 39124018 -84952154 + MTE-int LTR MaLR 50 282 -1298 1 883 252 247 0 61 chr9 39124225 39124307 -84951865 + Lx7 LINE L1 5448 5524 -323 1 883 647 90 10 0 chr9 39124324 39124424 -84951748 + (GA)n Simple_repeat Simple_repeat 1 101 0 1 883 559 273 130 14 chr9 39124424 39124706 -84951466 + Lx7 LINE L1 5544 5890 -692 1 883 1192 342 62 28 chr9 39124940 39125733 -84950439 + Lx9 LINE L1 6470 7289 -355 1 883 314 385 22 0 chr9 39127572 39127754 -84948418 + Lx8 LINE L1 7053 7238 -235 1 883 378 42 0 0 chr9 39127796 39127844 -84948328 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 883 24 32 0 0 chr9 39128124 39128155 -84948017 + AT_rich Low_complexity Low_complexity 1 31 0 1 883 232 291 88 75 chr9 39128224 39128344 -84947828 + L1M5 LINE L1 5429 5548 -616 1 883 414 0 0 0 chr9 39128344 39128390 -84947782 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 883 369 0 0 0 chr9 39128390 39128430 -84947742 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 883 232 291 88 75 chr9 39128430 39128627 -84947545 + L1M5 LINE L1 5549 5750 -414 1 883 315 287 11 11 chr9 39128777 39128872 -84947300 - Lx7 LINE L1 -598 7098 7004 1 883 387 367 30 36 chr9 39128873 39129209 -84946963 + Lx8 LINE L1 6279 6612 -861 1 883 24 0 0 0 chr9 39129699 39129723 -84946449 + AT_rich Low_complexity Low_complexity 1 24 0 1 883 231 167 0 0 chr9 39130186 39130228 -84945944 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 883 288 0 0 0 chr9 39130699 39130731 -84945441 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 883 24 32 0 0 chr9 39131834 39131865 -84944307 + AT_rich Low_complexity Low_complexity 1 31 0 1 883 23 0 0 0 chr9 39131997 39132020 -84944152 + AT_rich Low_complexity Low_complexity 1 23 0 1 883 249 33 0 0 chr9 39132128 39132158 -84944014 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 883 22 56 0 0 chr9 39134009 39134045 -84942127 + AT_rich Low_complexity Low_complexity 1 36 0 1 883 2211 135 3 17 chr9 39134528 39134883 -84941289 - L1_Mm LINE L1 -95 5788 5439 1 883 777 258 62 54 chr9 39136168 39136376 -84939796 - RNERVK23-int LTR ERVK -398 7819 7614 1 883 793 45 18 0 chr9 39136376 39136486 -84939686 + (TC)n Simple_repeat Simple_repeat 2 113 0 1 883 2312 298 34 21 chr9 39136486 39137357 -84938815 - RNERVK23-int LTR ERVK -640 7577 6695 1 883 1746 303 49 35 chr9 39137478 39138370 -84937802 - RNERVK23-int LTR ERVK -1732 6485 5581 1 883 32366 19 1 5 chr9 39138364 39142054 -84934118 + MERVL-int LTR ERVL 1687 5360 -125 1 883 392 167 46 35 chr9 39142054 39142141 -84934031 + ORR1A3-int LTR MaLR 553 640 -1323 1 883 308 26 0 0 chr9 39142141 39142164 -84934008 + MERVL-int LTR ERVL 5448 5485 0 1 883 2486 242 17 33 chr9 39142164 39142179 -84933993 + MYSERV16_I-int LTR ERVK 82 94 -2232 1 883 4474 8 0 0 chr9 39142179 39142672 -84933500 + MT2_Mm LTR ERVL 1 493 0 1 883 2486 242 17 33 chr9 39142672 39143345 -84932827 + MYSERV16_I-int LTR ERVK 95 759 -1567 1 883 291 200 0 0 chr9 39143366 39143416 -84932756 + RLTR11A LTR ERVK 479 528 0 1 883 492 18 0 0 chr9 39143503 39143560 -84932612 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 883 385 357 36 32 chr9 39143622 39143871 -84932301 - Lx8 LINE L1 -280 7193 6944 1 883 1854 214 27 0 chr9 39144164 39144565 -84931607 + L1_Mur2 LINE L1 5424 5835 -42 1 883 281 285 12 42 chr9 39144779 39144944 -84931228 + (CCCTAA)n Simple_repeat Simple_repeat 2 161 0 1 883 267 133 0 0 chr9 39144946 39144991 -84931181 + (GCCTAA)n Simple_repeat Simple_repeat 3 47 0 1 883 8468 98 17 7 chr9 39145404 39146640 -84929532 - Lx3_Mus LINE L1 -16 6993 5745 1 883 1072 266 63 42 chr9 39146834 39147253 -84928919 + RLTR26 LTR ERVK 5 469 -173 1 883 282 143 0 0 chr9 39147263 39147312 -84928860 + (CATA)n Simple_repeat Simple_repeat 3 51 0 1 883 235 345 84 25 chr9 39147529 39147767 -84928405 + L1M3 LINE L1 4123 4374 -1766 1 883 206 319 14 0 chr9 39147769 39147841 -84928331 + GA-rich Low_complexity Low_complexity 3 75 0 1 883 3222 121 66 57 chr9 39147871 39148433 -84927739 - RMER2 LTR ERV1 0 567 1 1 883 336 332 29 34 chr9 39149746 39150058 -84926114 - MuRRS4-int LTR ERV1 -5804 1974 1490 1 883 231 164 0 0 chr9 39150773 39150834 -84925338 + A-rich Low_complexity Low_complexity 1 61 0 1 883 1228 108 0 22 chr9 39151246 39151425 -84924747 - RMER2 LTR ERV1 -392 175 1 1 883 4119 199 49 35 chr9 39151432 39152355 -84923817 + Lx4B LINE L1 6105 7040 -18 1 883 189 74 0 0 chr9 39152360 39152387 -84923785 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1 883 242 272 16 8 chr9 39152705 39152831 -84923341 + (TAAA)n Simple_repeat Simple_repeat 2 128 0 1 883 24 0 0 0 chr9 39153104 39153128 -84923044 + AT_rich Low_complexity Low_complexity 1 24 0 1 883 1111 112 0 0 chr9 39153281 39153451 -84922721 - L1Md_F2 LINE L1 -12 6570 6401 1 883 277 263 57 57 chr9 39153695 39153800 -84922372 + MER5A1 DNA MER1_type 41 145 -21 1 883 2008 238 55 6 chr9 39154786 39154850 -84921322 - RLTR11A LTR ERVK -14 514 448 2 883 234 91 0 0 chr9 39154850 39154883 -84921289 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 883 2008 238 55 6 chr9 39154883 39155308 -84920864 - RLTR11A LTR ERVK -81 447 2 2 883 22 0 0 0 chr9 39156025 39156047 -84920125 + AT_rich Low_complexity Low_complexity 1 22 0 2 883 24 53 0 0 chr9 39156571 39156609 -84919563 + AT_rich Low_complexity Low_complexity 1 38 0 2 883 25 0 0 0 chr9 39157613 39157638 -84918534 + AT_rich Low_complexity Low_complexity 1 25 0 2 883 358 318 92 26 chr9 39157776 39157928 -84918244 + RSINE1 SINE B4 3 164 -1 2 883 423 0 0 0 chr9 39157959 39158006 -84918166 + (ATG)n Simple_repeat Simple_repeat 2 48 0 2 883 1674 26 0 0 chr9 39158047 39158237 -84917935 + B2_Mm1t SINE B2 1 190 -3 2 883 2375 43 7 0 chr9 39158292 39158595 -84917577 + L1Md_A LINE L1 6278 6582 0 2 883 295 182 0 0 chr9 39158855 39158910 -84917262 + ORR1C2 LTR MaLR 271 325 -59 2 883 1412 39 4 0 chr9 39158954 39159211 -84916961 + (TAGA)n Simple_repeat Simple_repeat 1 258 0 2 883 662 343 87 30 chr9 39159976 39160346 -84915826 - Lx8 LINE L1 -784 6689 6299 2 883 232 311 73 40 chr9 39160646 39160986 -84915186 - L1M5 LINE L1 -462 5717 5361 2 883 38277 46 1 14 chr9 39161148 39167326 -84908846 - L1Md_A LINE L1 -1 6581 487 2 883 26 50 0 0 chr9 39167850 39167890 -84908282 + AT_rich Low_complexity Low_complexity 1 40 0 2 883 306 125 0 0 chr9 39167890 39167938 -84908234 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 883 6725 182 52 8 chr9 39168408 39170293 -84905879 - L1VL4 LINE L1 -1140 2772 802 2 883 30 45 0 0 chr9 39171935 39171979 -84904193 + AT_rich Low_complexity Low_complexity 1 44 0 2 883 6176 146 26 13 chr9 39173389 39174478 -84901694 - Lx3A LINE L1 -7 6974 5872 2 883 2097 89 46 6 chr9 39174479 39174807 -84901365 - Lx LINE L1 0 6654 6314 2 883 575 279 81 96 chr9 39175063 39175543 -84900629 - L1_Rod LINE L1 -3 5844 5372 2 883 1263 276 100 19 chr9 39175588 39176027 -84900145 + RLTR20B3 LTR ERVK 6 482 -95 2 883 477 0 0 0 chr9 39176027 39176080 -84900092 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 883 1263 306 77 57 chr9 39176080 39176189 -84899983 + RLTR20B3 LTR ERVK 447 534 0 2 883 2504 171 67 105 chr9 39176267 39176639 -84899533 - RMER6A LTR ERVK 0 756 345 2 883 994 72 0 43 chr9 39176639 39176827 -84899345 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 883 2504 171 67 105 chr9 39176827 39177128 -84899044 - RMER6A LTR ERVK -412 344 109 2 883 959 250 48 21 chr9 39177568 39177858 -84898314 - BGLII_B LTR ERVK -10 431 134 2 883 1189 149 28 0 chr9 39177858 39178073 -84898099 - L1_Mus3 LINE L1 0 6638 6418 2 883 983 82 8 0 chr9 39178073 39178207 -84897965 + L1_Mus2 LINE L1 6247 6381 -185 2 883 762 164 21 7 chr9 39178207 39178348 -84897824 - BGLII_B LTR ERVK -292 149 7 2 883 459 338 14 32 chr9 39179623 39179840 -84896332 - Lx8 LINE L1 -725 6748 6536 2 883 254 345 32 92 chr9 39179937 39180122 -84896050 + Lx8 LINE L1 7179 7352 -121 2 883 2672 173 20 18 chr9 39180566 39181055 -84895117 - Lx2 LINE L1 -19 6978 6489 2 883 3875 101 29 0 chr9 39181077 39181633 -84894539 - Lx3_Mus LINE L1 -2 7007 6436 2 883 297 128 0 0 chr9 39181637 39181684 -84894488 + (A)n Simple_repeat Simple_repeat 1 47 0 2 883 2951 135 51 6 chr9 39181685 39181811 -84894361 + Lx3_Mus LINE L1 5910 6034 -975 2 883 399 21 0 0 chr9 39181811 39181859 -84894313 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 2 883 2951 135 51 6 chr9 39181859 39182239 -84893933 + Lx3_Mus LINE L1 6035 6438 -571 2 883 2181 163 46 14 chr9 39182238 39182655 -84893517 - Lx2 LINE L1 -500 6500 6071 2 883 21 0 0 0 chr9 39183357 39183378 -84892794 + AT_rich Low_complexity Low_complexity 1 21 0 2 883 393 282 11 28 chr9 39183424 39183606 -84892566 + (CCCTAA)n Simple_repeat Simple_repeat 1 179 0 2 883 263 246 7 0 chr9 39183628 39183770 -84892402 + (CCCTAA)n Simple_repeat Simple_repeat 4 146 0 2 883 3375 186 0 5 chr9 39183773 39184401 -84891771 + L1_Mm LINE L1 4676 5300 -583 2 883 814 47 0 19 chr9 39184395 39184503 -84891669 - L1Md_F2 LINE L1 -656 5926 5821 2 883 309 252 8 4 chr9 39184541 39184798 -84891374 + (CCCTAA)n Simple_repeat Simple_repeat 1 258 0 2 883 3304 138 15 31 chr9 39184798 39185383 -84890789 + L1_Mus3 LINE L1 4102 4677 -1206 2 883 1990 146 70 21 chr9 39185383 39185803 -84890369 - RMER17D2 LTR ERVK 0 809 369 2 883 2321 80 18 12 chr9 39185803 39186134 -84890038 + RMER17A LTR ERVK 1 333 -418 2 883 7534 105 9 1 chr9 39186137 39187473 -84888699 + L1_Mus3 LINE L1 5289 6634 -4 2 883 434 327 14 75 chr9 39187853 39188147 -84888025 + Lx9 LINE L1 7103 7378 -266 2 883 420 55 0 0 chr9 39188233 39188288 -84887884 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 883 360 119 0 0 chr9 39188288 39188346 -84887826 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 883 903 343 42 26 chr9 39189323 39189987 -84886185 - Lx9 LINE L1 -150 7494 6793 2 883 1859 162 25 0 chr9 39190024 39190338 -84885834 + ORR1A2 LTR MaLR 1 322 -5 2 110 604 308 56 19 chr9 39190343 39190611 -84885561 - Lx9 LINE L1 -760 6884 6607 2 884 22 56 0 0 chr9 39190773 39190809 -84885363 + AT_rich Low_complexity Low_complexity 1 36 0 2 884 27 29 0 0 chr9 39191490 39191524 -84884648 + AT_rich Low_complexity Low_complexity 1 34 0 2 884 22 0 0 0 chr9 39191965 39191987 -84884185 + AT_rich Low_complexity Low_complexity 1 22 0 2 884 659 115 10 0 chr9 39192446 39192542 -84883630 - L1_Mus2 LINE L1 -110 6456 6360 2 884 701 86 9 0 chr9 39192542 39192647 -84883525 + L1_Mus2 LINE L1 6461 6566 0 2 884 325 350 17 8 chr9 39193282 39193400 -84882772 + RMER12 LTR ERVK 733 851 -471 2 884 207 204 0 0 chr9 39193400 39193444 -84882728 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 884 209 254 28 0 chr9 39193937 39194008 -84882164 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 884 230 346 37 18 chr9 39194710 39194819 -84881353 + MER5A1 DNA MER1_type 47 157 -9 2 884 24 0 0 0 chr9 39197168 39197192 -84878980 + AT_rich Low_complexity Low_complexity 1 24 0 2 884 1137 120 52 0 chr9 39197662 39197853 -84878319 + L1_Mus3 LINE L1 6430 6630 -8 2 884 360 358 33 26 chr9 39197903 39198055 -84878117 + RSINE1 SINE B4 8 160 -5 2 884 227 278 118 80 chr9 39199185 39199549 -84876623 - L1M5 LINE L1 -413 5751 5374 2 884 424 319 120 14 chr9 39199761 39200127 -84876045 - Lx8 LINE L1 -17 7456 7052 2 884 21 57 0 0 chr9 39200607 39200642 -84875530 + AT_rich Low_complexity Low_complexity 1 35 0 2 884 24 53 0 0 chr9 39201204 39201242 -84874930 + AT_rich Low_complexity Low_complexity 1 38 0 2 884 421 349 82 35 chr9 39202896 39203211 -84872961 - Lx9 LINE L1 -407 7237 6908 2 884 32916 72 18 32 chr9 39203540 39208059 -84868113 + L1Md_A LINE L1 217 4904 -979 2 884 225 183 46 77 chr9 39208059 39208124 -84868048 - RMER20A LTR ERVK -268 248 186 2 884 32916 72 18 32 chr9 39208124 39208780 -84867392 + L1Md_A LINE L1 4905 5586 -297 2 884 7539 46 30 4 chr9 39208781 39209737 -84866435 + L1Md_F3 LINE L1 5588 6568 -16 2 884 32277 86 3 6 chr9 39210012 39215191 -84860981 + L1Md_F2 LINE L1 217 5586 -297 2 884 7539 70 4 6 chr9 39215191 39216186 -84859986 + L1Md_F2 LINE L1 5587 6579 -3 2 884 1095 82 7 0 chr9 39216195 39216341 -84859831 + B1_Mus1 SINE Alu 2 148 0 2 884 557 229 5 16 chr9 39216359 39216496 -84859676 + ORR1D1 LTR MaLR 145 316 -58 2 884 575 305 50 5 chr9 39216578 39216779 -84859393 - Lx8 LINE L1 -714 6759 6550 2 884 3993 109 32 28 chr9 39216816 39217469 -84858703 - Lx3A LINE L1 -515 6466 5811 2 884 1481 140 87 56 chr9 39218439 39218726 -84857446 + Lx3A LINE L1 6671 6966 -15 2 884 252 0 0 0 chr9 39218727 39218755 -84857417 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2 884 504 0 0 0 chr9 39219376 39219432 -84856740 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 884 648 120 0 0 chr9 39219430 39219530 -84856642 + (GAA)n Simple_repeat Simple_repeat 3 102 0 2 884 2842 231 46 16 chr9 39219999 39220319 -84855853 + RMER6D LTR ERVK 1 349 -371 2 884 234 0 0 0 chr9 39220319 39220345 -84855827 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 884 2842 231 46 16 chr9 39220345 39220723 -84855449 + RMER6D LTR ERVK 350 720 0 2 884 571 38 13 0 chr9 39220822 39220901 -84855271 - L1Md_A LINE L1 0 6582 6503 2 884 1050 93 0 0 chr9 39220901 39221040 -84855132 + B1_Mus1 SINE Alu 3 141 -7 2 884 324 103 0 0 chr9 39221059 39221117 -84855055 + (A)n Simple_repeat Simple_repeat 1 58 0 2 884 207 0 0 0 chr9 39221280 39221303 -84854869 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 884 8395 16 0 0 chr9 39221316 39222296 -84853876 - L1Md_T LINE L1 -1698 4185 3206 2 884 12047 21 0 0 chr9 39222296 39223696 -84852476 + L1Md_T LINE L1 4187 5586 -297 2 884 7929 56 1 0 chr9 39223696 39224690 -84851482 + L1Md_T LINE L1 5587 6581 -1 2 884 3313 185 44 2 chr9 39224724 39225337 -84850835 - Lx4A LINE L1 0 7058 6420 2 884 5370 163 42 3 chr9 39225343 39226666 -84849506 - Lx4A LINE L1 -778 6280 4907 2 884 1573 151 47 22 chr9 39226674 39226952 -84849220 - Lx3C LINE L1 -1 6975 6691 2 884 22 35 0 0 chr9 39228140 39228169 -84848003 + AT_rich Low_complexity Low_complexity 1 29 0 2 884 21 0 0 0 chr9 39229097 39229118 -84847054 + AT_rich Low_complexity Low_complexity 1 21 0 2 884 629 282 13 124 chr9 39230127 39230426 -84845746 - Lx9 LINE L1 -452 7192 6927 2 884 39 60 0 0 chr9 39230430 39230497 -84845675 + AT_rich Low_complexity Low_complexity 1 67 0 2 884 491 347 93 10 chr9 39230516 39230816 -84845356 + Lx9 LINE L1 6366 6690 -954 2 884 2915 124 13 17 chr9 39230910 39231386 -84844786 + Lx3A LINE L1 6508 6981 0 2 884 288 0 0 0 chr9 39231390 39231422 -84844750 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2 884 239 163 0 0 chr9 39232067 39232110 -84844062 - Lx9 LINE L1 -319 7325 7283 2 884 342 357 89 20 chr9 39235022 39235325 -84840847 + L1MD LINE L1 4000 4323 -1823 2 884 2298 263 95 86 chr9 39236333 39236578 -84839594 + RLTR25B LTR ERVK 1 246 -857 2 884 936 122 7 0 chr9 39236578 39236717 -84839455 - B1_Mus2 SINE Alu -7 140 1 2 884 3339 214 102 39 chr9 39236717 39237564 -84838608 + RLTR25B LTR ERVK 130 1103 0 2 884 21 0 0 0 chr9 39237849 39237870 -84838302 + AT_rich Low_complexity Low_complexity 1 21 0 2 884 325 268 41 61 chr9 39238007 39238154 -84838018 - L1MB1 LINE L1 -303 5997 5854 2 884 39 38 0 0 chr9 39239060 39239113 -84837059 + AT_rich Low_complexity Low_complexity 1 53 0 2 884 198 0 0 0 chr9 39239291 39239313 -84836859 + (A)n Simple_repeat Simple_repeat 1 22 0 2 884 380 272 22 0 chr9 39239326 39239418 -84836754 - Lx7 LINE L1 -398 7298 7205 3 884 344 241 55 26 chr9 39239482 39239654 -84836518 - Lx6 LINE L1 -292 7168 7106 3 884 1080 256 53 75 chr9 39239913 39240288 -84835884 - ORR1C2 LTR MaLR -17 367 1 3 884 182 65 65 0 chr9 39240366 39240397 -84835775 + (CATA)n Simple_repeat Simple_repeat 3 35 0 3 884 630 0 0 0 chr9 39241674 39241744 -84834428 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 884 2060 316 37 30 chr9 39242005 39243004 -84833168 - SRV_MM-int LTR ERVK -2716 3451 2446 3 884 446 280 11 22 chr9 39243708 39243887 -84832285 + (CCCTAA)n Simple_repeat Simple_repeat 2 178 0 3 884 319 201 0 36 chr9 39243910 39244075 -84832097 + (CCCTAA)n Simple_repeat Simple_repeat 4 162 0 3 884 3292 146 18 0 chr9 39244076 39244636 -84831536 + L1_Mus3 LINE L1 4108 4677 -1206 3 884 1563 134 153 44 chr9 39244636 39244943 -84831229 - RMER17D2 LTR ERVK 0 809 456 3 884 204 40 0 0 chr9 39244943 39244968 -84831204 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 884 1563 134 153 44 chr9 39244968 39245027 -84831145 - RMER17D2 LTR ERVK -354 455 403 3 884 2016 51 4 0 chr9 39245028 39245283 -84830889 + RMER17A LTR ERVK 1 256 -495 3 884 3733 48 7 0 chr9 39245283 39245804 -84830368 - L1Md_F2 LINE L1 -638 5944 5421 3 884 4824 61 0 11 chr9 39245804 39246432 -84829740 + L1Md_F2 LINE L1 5952 6572 -10 3 884 1619 183 29 95 chr9 39246435 39246960 -84829212 + RMER17A LTR ERVK 246 735 -16 3 884 2405 132 67 7 chr9 39246986 39247390 -84828782 - RMER17D2 LTR ERVK -381 428 1 3 884 7127 141 5 1 chr9 39247390 39248740 -84827432 + L1_Mus3 LINE L1 4672 6024 -614 3 884 3125 60 0 14 chr9 39248741 39249161 -84827011 + L1_Mus3 LINE L1 6168 6581 -1 3 884 4299 120 5 0 chr9 39249154 39249779 -84826393 + L1_Mus3 LINE L1 6007 6634 -4 3 884 467 314 20 74 chr9 39250147 39250443 -84825729 + Lx9 LINE L1 7103 7382 -262 3 884 240 254 0 48 chr9 39250517 39250579 -84825593 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 884 237 33 0 0 chr9 39250580 39250610 -84825562 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 884 369 0 0 0 chr9 39250610 39250650 -84825522 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 884 35339 35 0 0 chr9 39250822 39256229 -84819943 + L1Md_T LINE L1 86 5589 -297 3 884 8965 6 0 0 chr9 39256229 39257224 -84818948 + L1Md_T LINE L1 5590 6584 -1 3 884 908 118 81 0 chr9 39257402 39257538 -84818634 + B1_Mm SINE Alu 1 147 0 3 884 588 65 0 0 chr9 39257539 39257616 -84818556 + (GAAAA)n Simple_repeat Simple_repeat 4 80 0 3 884 21 0 0 0 chr9 39258215 39258236 -84817936 + AT_rich Low_complexity Low_complexity 1 21 0 3 884 903 332 46 38 chr9 39258370 39259002 -84817170 - Lx9 LINE L1 -128 7516 6880 3 884 1921 143 25 0 chr9 39259002 39259316 -84816856 + ORR1A2 LTR MaLR 1 322 -5 3 884 636 300 56 19 chr9 39259322 39259590 -84816582 - Lx9 LINE L1 -761 6883 6606 3 884 21 36 0 0 chr9 39260466 39260494 -84815678 + AT_rich Low_complexity Low_complexity 1 28 0 3 884 3580 62 0 19 chr9 39261953 39262430 -84813742 - L1Md_F2 LINE L1 -3 6579 6112 3 884 516 220 0 0 chr9 39262615 39262733 -84813439 + (TA)n Simple_repeat Simple_repeat 2 119 0 3 884 209 254 28 0 chr9 39263223 39263294 -84812878 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 884 22 35 0 0 chr9 39265791 39265820 -84810352 + AT_rich Low_complexity Low_complexity 1 29 0 3 884 348 64 0 0 chr9 39266310 39266357 -84809815 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 884 979 110 0 0 chr9 39266358 39266494 -84809678 - B1_Mus1 SINE Alu -12 136 1 3 884 3293 88 53 8 chr9 39266613 39267104 -84809068 - L1Md_F2 LINE L1 -4 6578 6066 3 884 316 370 96 6 chr9 39267393 39267725 -84808447 - Lx8 LINE L1 -17 7456 7095 3 884 21 0 0 0 chr9 39270494 39270515 -84805657 + AT_rich Low_complexity Low_complexity 1 21 0 3 884 5750 164 29 4 chr9 39270581 39271663 -84804509 + L1_Mur2 LINE L1 3786 4894 -983 3 884 808 148 28 14 chr9 39271660 39271804 -84804368 + L1_Mur2 LINE L1 5073 5218 -659 3 884 1179 246 40 75 chr9 39271804 39272125 -84804047 - RMER13A LTR ERVK 0 860 551 3 884 502 102 0 132 chr9 39272127 39272263 -84803909 + L1_Mus4 LINE L1 6519 6636 0 3 884 239 256 105 0 chr9 39272511 39272597 -84803575 - Lx5 LINE L1 -1 7049 6955 3 884 2511 203 40 4 chr9 39272687 39273182 -84802990 - Lx4A LINE L1 0 7058 6546 3 884 561 259 13 162 chr9 39273222 39273536 -84802636 - Lx9 LINE L1 -452 7192 6926 3 884 210 145 31 46 chr9 39273537 39273602 -84802570 + (TATAA)n Simple_repeat Simple_repeat 2 65 0 3 884 3036 96 26 17 chr9 39274491 39274956 -84801216 + Lx3A LINE L1 6508 6976 -5 3 884 306 0 0 0 chr9 39274960 39274994 -84801178 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 3 884 250 176 0 19 chr9 39275645 39275697 -84800475 - Lx9 LINE L1 -313 7331 7281 3 884 22 0 0 0 chr9 39276601 39276623 -84799549 + AT_rich Low_complexity Low_complexity 1 22 0 3 884 510 61 0 0 chr9 39278883 39278949 -84797223 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 884 22 70 0 0 chr9 39280322 39280365 -84795807 + AT_rich Low_complexity Low_complexity 1 43 0 3 884 3571 41 20 5 chr9 39280948 39281392 -84794780 - L1Md_T LINE L1 -73 6509 6059 3 884 540 258 74 120 chr9 39282443 39283063 -84793109 - L1M3 LINE L1 -1448 4692 4139 3 884 23 78 0 0 chr9 39283327 39283378 -84792794 + AT_rich Low_complexity Low_complexity 1 51 0 3 884 3264 119 0 28 chr9 39283379 39283888 -84792284 + ETnERV3-int LTR ERVK 5286 5780 -28 3 884 7262 55 6 0 chr9 39283902 39284790 -84791382 + RLTR13B1 LTR ERVK 1 893 0 3 884 230 221 0 29 chr9 39284802 39284872 -84791300 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 884 507 73 0 0 chr9 39284933 39285001 -84791171 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 884 2642 214 18 13 chr9 39285069 39285626 -84790546 - RLTR20B2 LTR ERVK 0 560 1 3 884 295 271 31 0 chr9 39285652 39285748 -84790424 - Lx9 LINE L1 -314 7330 7232 3 884 391 261 82 33 chr9 39286115 39286297 -84789875 - Lx9 LINE L1 -402 7242 7052 3 884 237 253 53 32 chr9 39286314 39286408 -84789764 + L1MB5 LINE L1 5570 5665 -518 3 884 190 89 21 43 chr9 39286467 39286514 -84789658 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 3 884 256 279 43 83 chr9 39286616 39286832 -84789340 + L1MB5 LINE L1 5856 6068 -106 3 884 210 71 0 0 chr9 39286867 39286895 -84789277 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 884 2839 171 11 13 chr9 39286895 39287421 -84788751 - Lx4B LINE L1 -19 7039 6515 3 884 1022 103 7 0 chr9 39287447 39287592 -84788580 + B1_Mus1 SINE Alu 2 147 -1 3 884 216 0 0 0 chr9 39287596 39287620 -84788552 + (TTAAA)n Simple_repeat Simple_repeat 2 25 0 3 884 323 224 52 0 chr9 39287620 39287736 -84788436 + Lx9 LINE L1 7523 7644 0 3 884 21 82 0 0 chr9 39287784 39287833 -84788339 + AT_rich Low_complexity Low_complexity 1 49 0 3 884 636 223 13 33 chr9 39287833 39287986 -84788186 + B1_Mur4 SINE Alu 1 150 0 3 884 473 344 93 37 chr9 39288546 39288899 -84787273 - Lx8 LINE L1 -6 7467 7095 3 884 465 311 47 18 chr9 39288958 39289128 -84787044 + Lx8 LINE L1 6586 6760 -713 3 884 526 201 144 0 chr9 39289406 39289545 -84786627 + Lx LINE L1 6491 6649 -5 3 884 997 122 0 0 chr9 39289993 39290141 -84786031 + B2_Mm2 SINE B2 1 148 -47 3 884 297 125 0 20 chr9 39290168 39290217 -84785955 + B2_Mm2 SINE B2 2 49 -146 3 884 900 253 141 34 chr9 39290276 39290908 -84785264 + Lx9 LINE L1 5381 6114 -1530 3 884 207 125 0 0 chr9 39290974 39291014 -84785158 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 884 822 299 27 8 chr9 39291059 39291319 -84784853 + Lx9 LINE L1 7076 7340 -304 3 884 301 324 68 0 chr9 39291360 39291508 -84784664 + HAL1-3A_ME LINE L1 1963 2120 -738 3 884 24 67 0 0 chr9 39292962 39293007 -84783165 + AT_rich Low_complexity Low_complexity 1 45 0 3 884 994 104 20 27 chr9 39293894 39294042 -84782130 - B1_Mus1 SINE Alu 0 148 2 3 884 204 184 0 0 chr9 39294639 39294688 -84781484 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 884 358 362 111 23 chr9 39294757 39295227 -84780945 + Lx8 LINE L1 6959 7469 -4 3 884 227 257 134 69 chr9 39295543 39295760 -84780412 + L1M5 LINE L1 5484 5714 -450 3 884 183 250 0 0 chr9 39296129 39296197 -84779975 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 884 622 355 25 7 chr9 39296611 39296916 -84779256 - Lx8 LINE L1 -127 7346 7025 3 884 571 354 53 40 chr9 39296940 39297317 -84778855 + Lx8 LINE L1 6281 6662 -811 3 884 198 0 0 0 chr9 39298261 39298283 -84777889 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3 884 470 308 6 19 chr9 39298299 39298458 -84777714 - RSINE1 SINE B4 -6 159 3 3 884 668 18 64 0 chr9 39299180 39299290 -84776882 + (TC)n Simple_repeat Simple_repeat 2 118 0 3 884 1101 76 14 0 chr9 39300889 39301034 -84775138 + B1_Mus2 SINE Alu 1 147 0 3 884 189 0 0 0 chr9 39301042 39301063 -84775109 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 3 884 659 339 24 35 chr9 39301940 39302230 -84773942 - B4 SINE B4 -3 289 3 3 884 1116 290 80 34 chr9 39302374 39302760 -84773412 + MTD LTR MaLR 10 413 -6 3 884 378 218 0 0 chr9 39302760 39302870 -84773302 + (TG)n Simple_repeat Simple_repeat 2 111 0 3 884 1221 201 76 30 chr9 39303027 39303329 -84772843 - RLTR22_Mur LTR ERVK 0 1848 1533 3 884 2666 161 10 26 chr9 39303536 39304028 -84772144 - RLTR22_Mur LTR ERVK -1043 805 322 3 884 35664 28 14 19 chr9 39304030 39308512 -84767660 + L1Md_A LINE L1 418 4926 -957 3 884 225 183 46 77 chr9 39308512 39308577 -84767595 - RMER20A LTR ERVK -268 248 186 3 884 35664 28 14 19 chr9 39308577 39309231 -84766941 + L1Md_A LINE L1 4927 5586 -297 3 884 8313 38 0 0 chr9 39309231 39310225 -84765947 + L1Md_T LINE L1 5587 6580 -2 3 884 456 139 139 0 chr9 39310242 39310343 -84765829 - RLTR22_Mur LTR ERVK -1512 336 222 3 884 2693 245 24 30 chr9 39310567 39311232 -84764940 + Lx9 LINE L1 6383 7043 -601 3 884 1230 300 131 14 chr9 39311977 39312497 -84763675 + MTD-int LTR MaLR 674 1254 -4 3 884 923 304 89 14 chr9 39312507 39312857 -84763315 + MTD LTR MaLR 6 381 -38 3 884 562 264 119 36 chr9 39313680 39313983 -84762189 - Lx9 LINE L1 -15 7629 7302 3 884 3615 65 0 17 chr9 39314359 39315010 -84761162 - L1_Mus3 LINE L1 -617 6021 5379 3 884 4573 84 16 5 chr9 39315012 39315644 -84760528 + L1_Mus3 LINE L1 6000 6638 0 3 884 238 106 0 41 chr9 39315647 39315683 -84760489 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 3 884 1088 128 6 0 chr9 39315683 39315862 -84760310 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 884 238 106 0 41 chr9 39315862 39315874 -84760298 + (GAAA)n Simple_repeat Simple_repeat 1 12 0 3 884 288 53 0 0 chr9 39315929 39315967 -84760205 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 884 348 381 77 0 chr9 39317484 39317665 -84758507 - B3A SINE B2 0 198 4 3 884 315 42 0 0 chr9 39319686 39319734 -84756438 + Lx LINE L1 6602 6649 -5 3 884 434 325 75 58 chr9 39319770 39320129 -84756043 + L1M4 LINE L1 4068 4432 -1714 4 110 6030 232 62 39 chr9 39320189 39321719 -84754453 + Lx7 LINE L1 6132 7696 0 4 885 723 335 80 47 chr9 39321759 39322518 -84753654 + L1M4 LINE L1 4499 5282 -864 4 885 2627 102 23 0 chr9 39322685 39323079 -84753093 + L1_Mus1 LINE L1 6152 6554 -13 4 885 413 51 0 33 chr9 39323079 39323140 -84753032 + (TAA)n Simple_repeat Simple_repeat 3 61 0 4 885 465 103 0 0 chr9 39323773 39323841 -84752331 + (T)n Simple_repeat Simple_repeat 1 68 0 4 885 1125 75 7 7 chr9 39323841 39323989 -84752183 - B1_Mus1 SINE Alu 0 148 1 4 885 1479 63 21 0 chr9 39324191 39324382 -84751790 + B2_Mm2 SINE B2 1 195 0 4 885 23 86 0 0 chr9 39324677 39324735 -84751437 + AT_rich Low_complexity Low_complexity 1 58 0 4 885 3200 58 22 2 chr9 39324821 39325235 -84750937 - L1_Mus2 LINE L1 -1 6565 6144 4 885 445 105 0 31 chr9 39325235 39325333 -84750839 - L1Md_F2 LINE L1 -12 6570 6476 4 885 25 65 0 0 chr9 39325570 39325616 -84750556 + AT_rich Low_complexity Low_complexity 1 46 0 4 885 272 343 9 0 chr9 39327251 39327359 -84748813 + GA-rich Low_complexity Low_complexity 2 110 0 4 885 4958 31 0 5 chr9 39327819 39328406 -84747766 - L1Md_F2 LINE L1 0 6582 5999 4 885 968 202 82 0 chr9 39329329 39329537 -84746635 - URR1A DNA MER1_type -1 225 1 4 885 333 140 0 0 chr9 39329563 39329620 -84746552 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 885 406 246 54 31 chr9 39330076 39330206 -84745966 - MLT1D LTR MaLR -5 500 368 4 885 363 296 30 79 chr9 39330207 39330433 -84745739 - MLT1D LTR MaLR -280 225 6 4 885 367 330 11 0 chr9 39330697 39330791 -84745381 + ID_B1 SINE B4 2 96 -128 4 885 1055 260 50 22 chr9 39331598 39331935 -84744237 + Lx8 LINE L1 7042 7517 -127 4 885 279 0 0 0 chr9 39331935 39331966 -84744206 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 885 299 208 16 16 chr9 39331965 39332087 -84744085 + (TA)n Simple_repeat Simple_repeat 1 122 0 4 885 261 0 0 0 chr9 39332087 39332116 -84744056 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 885 2323 81 34 3 chr9 39332215 39332538 -84743634 + L1_Mus3 LINE L1 6301 6633 -5 4 885 383 20 39 0 chr9 39332566 39332617 -84743555 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 4 885 206 121 0 0 chr9 39332890 39332923 -84743249 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 885 39690 30 3 6 chr9 39333027 39339424 -84736748 - L1Md_T LINE L1 0 6582 210 4 885 29 0 0 0 chr9 39339468 39339497 -84736675 + AT_rich Low_complexity Low_complexity 1 29 0 4 885 356 220 42 52 chr9 39339851 39339947 -84736225 - Lx7 LINE L1 -398 7298 7204 4 885 2956 87 14 2 chr9 39340104 39340517 -84735655 - L1_Mus3 LINE L1 0 6638 6221 4 885 395 43 0 0 chr9 39340517 39340564 -84735608 + L1_Mus3 LINE L1 6164 6210 -426 4 885 708 303 77 27 chr9 39340563 39340861 -84735311 - Lx7 LINE L1 -686 7010 6698 4 885 414 0 0 0 chr9 39341027 39341073 -84735099 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 4 885 337 236 83 129 chr9 39341179 39341288 -84734884 + RMER10A LTR ERVL 129 235 -207 4 885 585 0 0 0 chr9 39341288 39341353 -84734819 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 885 337 236 83 129 chr9 39341353 39341545 -84734627 + RMER10A LTR ERVL 236 415 -27 4 885 24 0 0 0 chr9 39341566 39341590 -84734582 + AT_rich Low_complexity Low_complexity 1 24 0 4 885 1279 318 50 21 chr9 39341685 39342206 -84733966 - Lx8 LINE L1 -11 7462 6927 4 885 2192 232 90 35 chr9 39342817 39343415 -84732757 - RMER1B Other Other -3 1063 433 4 885 2626 220 22 41 chr9 39343489 39344125 -84732047 + RMER20B LTR ERVK 4 627 0 4 885 409 260 63 24 chr9 39344125 39344251 -84731921 - RMER1A Other Other -857 173 43 4 885 1278 266 110 62 chr9 39344292 39344981 -84731191 - RMER1B Other Other -557 509 1 4 885 697 190 48 105 chr9 39345832 39345874 -84730298 - RMER17C LTR ERVK 0 410 369 4 885 8203 28 6 3 chr9 39345874 39346849 -84729323 + RLTR13A3 LTR ERVK 1 978 0 4 885 697 190 48 105 chr9 39346849 39346999 -84729173 - RMER17C LTR ERVK -42 368 231 4 885 333 0 0 0 chr9 39346999 39347036 -84729136 + (CAGAGA)n Simple_repeat Simple_repeat 4 40 0 4 885 697 190 48 105 chr9 39347036 39347136 -84729036 - RMER17C LTR ERVK -180 230 134 4 885 33 43 0 0 chr9 39348207 39348254 -84727918 + AT_rich Low_complexity Low_complexity 1 47 0 4 885 379 319 89 42 chr9 39348544 39348734 -84727438 - MamRep605 Unknown Unknown -79 797 599 4 885 219 69 0 0 chr9 39348877 39348906 -84727266 + (TAA)n Simple_repeat Simple_repeat 3 31 0 4 885 301 301 60 75 chr9 39349920 39350053 -84726119 - B1F SINE Alu -16 133 3 4 885 647 128 0 0 chr9 39350111 39350213 -84725959 - Lx2 LINE L1 -6 6991 6890 4 885 327 21 0 0 chr9 39350209 39350257 -84725915 + Lx2 LINE L1 6950 6997 0 4 885 297 158 35 122 chr9 39350579 39350694 -84725478 - Lx9 LINE L1 -22 7622 7518 4 885 21 57 0 0 chr9 39350801 39350836 -84725336 + AT_rich Low_complexity Low_complexity 1 35 0 4 885 22 35 0 0 chr9 39350845 39350874 -84725298 + AT_rich Low_complexity Low_complexity 1 29 0 4 885 596 248 154 36 chr9 39351102 39351349 -84724823 + Lx8 LINE L1 5639 5914 -1559 4 885 429 20 0 0 chr9 39351714 39351764 -84724408 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 885 1257 321 17 87 chr9 39351836 39352094 -84724078 + Lx8 LINE L1 6211 6444 -1029 4 885 996 68 75 0 chr9 39352094 39352227 -84723945 - B1_Mus1 SINE Alu -2 146 4 4 885 1257 321 17 87 chr9 39352227 39352507 -84723665 + Lx8 LINE L1 6445 6711 -762 4 885 264 259 77 103 chr9 39352520 39352675 -84723497 - RLTR41 LTR ERV1 -45 401 251 4 885 1237 78 0 11 chr9 39353421 39353602 -84722570 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 4 885 396 0 0 0 chr9 39353603 39353647 -84722525 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 4 885 1665 35 0 0 chr9 39353676 39353878 -84722294 - L1Md_T LINE L1 0 6582 6381 4 885 422 310 73 22 chr9 39353960 39354138 -84722034 + RLTR23 LTR ERV1 244 430 0 4 885 1154 297 86 59 chr9 39354922 39355717 -84720455 + L1MA8 LINE L1 5416 6231 -60 4 885 348 262 86 40 chr9 39355728 39355903 -84720269 - RMER13B LTR ERVK -8 900 718 4 885 2688 213 73 73 chr9 39355899 39356723 -84719449 - RMER17B LTR ERVK -137 771 1 4 885 961 216 118 7 chr9 39356792 39357081 -84719091 + Lx9 LINE L1 7316 7636 -8 4 885 21 0 0 0 chr9 39357090 39357111 -84719061 + AT_rich Low_complexity Low_complexity 1 21 0 4 885 210 71 0 0 chr9 39357168 39357196 -84718976 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 885 239 0 32 0 chr9 39357476 39357507 -84718665 + (ATG)n Simple_repeat Simple_repeat 1 32 0 4 885 893 136 0 7 chr9 39359534 39359689 -84716483 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 4 885 183 80 0 0 chr9 39359897 39359922 -84716250 + (A)n Simple_repeat Simple_repeat 1 25 0 4 885 22 0 0 0 chr9 39360431 39360453 -84715719 + AT_rich Low_complexity Low_complexity 1 22 0 4 885 344 328 61 97 chr9 39361551 39361747 -84714425 - MLT1F1 LTR MaLR -11 558 370 4 885 264 200 0 0 chr9 39363106 39363171 -84713001 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 4 885 665 346 22 26 chr9 39363273 39363765 -84712407 + L1_Mur3 LINE L1 56 545 -7167 4 885 1049 253 58 0 chr9 39363759 39364052 -84712120 + L1_Mur3 LINE L1 843 1152 -6560 4 885 343 115 19 0 chr9 39364073 39364125 -84712047 - MTC LTR MaLR -264 157 105 4 885 984 58 72 14 chr9 39364125 39364264 -84711908 + B1_Mus1 SINE Alu 1 147 -1 4 885 495 14 27 14 chr9 39364269 39364342 -84711830 + (CAAAAA)n Simple_repeat Simple_repeat 4 77 0 4 885 579 216 17 0 chr9 39364344 39364460 -84711712 - MTC LTR MaLR -301 120 3 4 885 1044 254 15 11 chr9 39364536 39364799 -84711373 + MTC LTR MaLR 150 413 -8 4 885 22 56 0 0 chr9 39365093 39365129 -84711043 + AT_rich Low_complexity Low_complexity 1 36 0 4 885 1112 191 9 19 chr9 39366254 39366468 -84709704 - B3 SINE B2 0 216 5 4 885 632 329 6 6 chr9 39366650 39366809 -84709363 - RSINE1 SINE B4 -6 159 1 4 885 249 116 29 14 chr9 39366817 39366887 -84709285 + T-rich Low_complexity Low_complexity 2 72 0 4 885 380 67 17 0 chr9 39367865 39367925 -84708247 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 4 885 217 314 34 34 chr9 39369839 39369928 -84706244 + MIRb SINE MIR 140 228 -40 4 885 273 75 57 0 chr9 39370478 39370531 -84705641 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 885 585 326 50 11 chr9 39370615 39370909 -84705263 + MLT2B4 LTR ERVL 4 302 -252 4 885 1788 322 52 28 chr9 39370968 39372295 -84703877 - Lx8 LINE L1 -773 6700 5335 4 885 277 167 166 2 chr9 39372505 39372591 -84703581 - Lx8 LINE L1 -607 5273 5144 4 885 1817 293 65 37 chr9 39372588 39373297 -84702875 - Lx8 LINE L1 -118 7355 6627 4 885 1043 281 24 40 chr9 39373297 39373671 -84702501 + ORR1D2 LTR MaLR 1 368 -2 4 885 2316 345 90 57 chr9 39373678 39374025 -84702147 + ORR1D2-int LTR MaLR 7 364 -1216 4 885 411 38 0 0 chr9 39374025 39374078 -84702094 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 885 2316 345 90 57 chr9 39374078 39374321 -84701851 + ORR1D2-int LTR MaLR 365 611 -969 4 885 4775 128 66 10 chr9 39374321 39375108 -84701064 - Lx3B LINE L1 -4 6969 6139 4 885 2316 345 90 57 chr9 39375108 39375988 -84700184 + ORR1D2-int LTR MaLR 612 1527 -53 4 885 955 309 56 25 chr9 39375988 39376346 -84699826 + ORR1D2 LTR MaLR 1 369 -1 4 885 403 369 54 5 chr9 39376602 39376806 -84699366 + LTR16C LTR ERVL 273 486 -3 4 885 315 0 0 0 chr9 39377942 39377977 -84698195 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 885 22 0 0 0 chr9 39378232 39378254 -84697918 + AT_rich Low_complexity Low_complexity 1 22 0 4 885 440 269 37 84 chr9 39378266 39378457 -84697715 - B3A SINE B2 -16 182 1 4 885 804 21 0 0 chr9 39378711 39378805 -84697367 + (TTC)n Simple_repeat Simple_repeat 1 94 0 4 885 261 0 0 0 chr9 39378805 39378834 -84697338 + (TTA)n Simple_repeat Simple_repeat 3 31 0 4 885 654 118 0 0 chr9 39381828 39381930 -84694242 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 4 885 255 23 0 64 chr9 39382162 39382209 -84693963 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 885 270 0 0 0 chr9 39383868 39383898 -84692274 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 885 345 18 34 34 chr9 39383898 39383957 -84692215 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 885 735 168 68 8 chr9 39383957 39384089 -84692083 - B1_Mus1 SINE Alu -2 146 7 4 885 908 241 19 10 chr9 39384237 39384442 -84691730 - B3 SINE B2 -5 211 5 4 885 205 312 92 23 chr9 39384673 39384804 -84691368 - MIRb SINE MIR -55 213 74 4 885 613 237 35 21 chr9 39385357 39385499 -84690673 + B1_Mur1 SINE Alu 6 149 0 5 885 24 67 0 0 chr9 39385548 39385593 -84690579 + AT_rich Low_complexity Low_complexity 1 45 0 5 885 14588 118 22 9 chr9 39385670 39388806 -84687366 + L1_Mus3 LINE L1 3459 6633 -5 5 885 2636 75 64 0 chr9 39389117 39389477 -84686695 - MTB LTR MaLR 0 400 18 5 885 2104 90 26 16 chr9 39389460 39389766 -84686406 + MTA_Mm LTR MaLR 16 324 -72 5 885 480 297 66 52 chr9 39389830 39390043 -84686129 - B3 SINE B2 0 216 1 5 885 605 229 14 14 chr9 39390125 39390267 -84685905 - B1_Mur4 SINE Alu -8 142 1 5 885 360 0 0 0 chr9 39391820 39391860 -84684312 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 885 624 261 17 57 chr9 39391867 39392042 -84684130 - B3A SINE B2 -30 168 1 5 885 835 190 0 7 chr9 39392119 39392262 -84683910 - B1_Mur2 SINE Alu -1 148 7 5 885 3060 67 5 5 chr9 39392361 39392769 -84683403 - L1_Mus1 LINE L1 0 6567 6160 5 885 236 288 30 15 chr9 39392807 39392874 -84683298 - B3 SINE B2 -139 77 10 5 885 324 48 0 0 chr9 39392935 39392977 -84683195 + (ATG)n Simple_repeat Simple_repeat 1 42 0 5 885 348 189 26 39 chr9 39393511 39393588 -84682584 + B3A SINE B2 1 76 -122 5 885 632 269 5 100 chr9 39393753 39393943 -84682229 + B3A SINE B2 3 174 -24 5 885 378 0 0 0 chr9 39393967 39394009 -84682163 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 885 4503 211 39 37 chr9 39394078 39395126 -84681046 + RMER1B Other Other 21 1342 0 5 885 195 42 0 0 chr9 39398152 39398176 -84677996 + (T)n Simple_repeat Simple_repeat 1 24 0 5 885 450 36 0 0 chr9 39399792 39399848 -84676324 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 885 360 0 0 0 chr9 39400139 39400179 -84675993 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 885 387 0 0 0 chr9 39400179 39400221 -84675951 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 885 293 43 43 0 chr9 39400635 39400681 -84675491 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 885 751 271 111 13 chr9 39403441 39403748 -84672424 - Lx8 LINE L1 0 7473 7137 5 885 423 0 0 0 chr9 39404963 39405010 -84671162 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 885 468 325 0 65 chr9 39405019 39405157 -84671015 - RSINE1 SINE B4 -36 129 1 5 885 219 289 58 0 chr9 39405845 39405897 -84670275 + ID SINE ID 4 58 -166 5 885 216 216 0 0 chr9 39405929 39405980 -84670192 + CT-rich Low_complexity Low_complexity 5 55 0 5 885 777 81 0 0 chr9 39406570 39406669 -84669503 + B1_Mus1 SINE Alu 40 138 -10 5 885 198 0 0 0 chr9 39406669 39406691 -84669481 + (CAA)n Simple_repeat Simple_repeat 2 23 0 5 885 234 0 0 0 chr9 39407104 39407130 -84669042 + (A)n Simple_repeat Simple_repeat 1 26 0 5 885 291 114 0 0 chr9 39410042 39410086 -84666086 + (A)n Simple_repeat Simple_repeat 1 44 0 5 885 231 36 0 0 chr9 39410428 39410456 -84665716 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 885 234 128 0 0 chr9 39410458 39410497 -84665675 + (GGGAGA)n Simple_repeat Simple_repeat 3 41 0 5 885 594 212 8 17 chr9 39412634 39412754 -84663418 + MTD LTR MaLR 2 120 -299 5 885 219 282 0 25 chr9 39412871 39412951 -84663221 + T-rich Low_complexity Low_complexity 3 80 0 5 885 741 85 0 0 chr9 39413337 39413443 -84662729 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 5 885 5010 235 111 29 chr9 39413445 39414940 -84661232 - Lx6 LINE L1 -163 7297 5680 5 885 768 178 23 0 chr9 39414951 39415125 -84661047 - Lx6 LINE L1 -580 5300 5123 5 885 2264 211 27 3 chr9 39415116 39415999 -84660173 - Lx6 LINE L1 -4076 1804 904 5 885 763 324 42 20 chr9 39416034 39416437 -84659735 - Lx6 LINE L1 -7273 455 44 5 885 638 254 28 0 chr9 39417083 39417225 -84658947 + RSINE1 SINE B4 1 146 -19 5 885 186 43 0 0 chr9 39418151 39418174 -84657998 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 885 455 60 15 0 chr9 39420622 39420689 -84655483 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 885 1845 245 24 20 chr9 39422130 39422584 -84653588 + Lx6 LINE L1 6828 7283 -177 5 885 225 0 0 0 chr9 39422871 39422896 -84653276 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 5 885 212 231 0 0 chr9 39423791 39423830 -84652342 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 885 2591 62 3 0 chr9 39423997 39424334 -84651838 + ORR1A1 LTR MaLR 1 338 -8 5 885 325 248 18 9 chr9 39424601 39424827 -84651345 + (CTAGGG)n Simple_repeat Simple_repeat 1 228 0 5 885 7818 141 16 18 chr9 39425920 39427305 -84648867 + Lx2 LINE L1 5607 6988 -9 5 885 6090 102 15 21 chr9 39427305 39428219 -84647953 + Lx LINE L1 5743 6651 -3 5 885 235 273 26 0 chr9 39429854 39429931 -84646241 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 885 225 0 0 0 chr9 39432788 39432813 -84643359 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 885 588 14 0 0 chr9 39432813 39432881 -84643291 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 885 21 0 0 0 chr9 39433251 39433272 -84642900 + AT_rich Low_complexity Low_complexity 1 21 0 5 885 652 234 12 110 chr9 39433281 39433580 -84642592 - RMER17C LTR ERVK -33 377 109 5 885 360 0 0 0 chr9 39433580 39433620 -84642552 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 885 652 234 12 110 chr9 39433620 39433646 -84642526 - RMER17C LTR ERVK -302 108 84 5 885 435 174 0 0 chr9 39433646 39433761 -84642411 + GA-rich Low_complexity Low_complexity 2 116 0 5 885 446 197 94 0 chr9 39433761 39433878 -84642294 - RMER17C-int LTR ERVK -146 3092 2965 5 885 306 0 0 0 chr9 39433888 39433922 -84642250 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 885 3549 199 65 81 chr9 39433925 39435254 -84640918 - RMER17C-int LTR ERVK -2461 3676 1809 5 885 234 105 0 0 chr9 39435254 39435292 -84640880 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 885 3549 181 49 84 chr9 39435292 39435728 -84640444 - RMER17C-int LTR ERVK -1430 1808 1352 5 885 279 0 0 0 chr9 39435728 39435759 -84640413 + (T)n Simple_repeat Simple_repeat 1 31 0 5 885 1131 64 0 0 chr9 39435764 39435904 -84640268 - B1_Mus2 SINE Alu -7 140 1 5 885 24 0 0 0 chr9 39436025 39436049 -84640123 + AT_rich Low_complexity Low_complexity 1 24 0 5 885 532 186 54 38 chr9 39436049 39436196 -84639976 - B2_Mm2 SINE B2 0 216 74 5 885 378 238 113 101 chr9 39436513 39436761 -84639411 - RMER17C LTR ERVK -108 302 52 5 885 387 0 0 0 chr9 39436917 39436960 -84639212 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 885 464 81 0 13 chr9 39437386 39437461 -84638711 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 885 295 306 35 0 chr9 39437474 39437559 -84638613 - RSINE1 SINE B4 -44 121 34 5 885 435 38 0 0 chr9 39437597 39437650 -84638522 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 885 1767 107 233 12 chr9 39437684 39438014 -84638158 - RLTR9B LTR ERVK -34 403 1 5 885 426 20 0 0 chr9 39438146 39438197 -84637975 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 885 294 50 0 0 chr9 39438198 39438238 -84637934 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 885 302 327 107 0 chr9 39438507 39438657 -84637515 - Tigger5 DNA MER2_type -55 2351 2186 5 885 572 339 31 18 chr9 39438710 39438935 -84637237 - Tigger5 DNA MER2_type -2158 248 21 5 885 266 179 0 0 chr9 39439148 39439204 -84636968 - Lx6 LINE L1 -11 7449 7394 5 885 1364 350 55 47 chr9 39439243 39439627 -84636545 - MTE-int LTR MaLR -242 1338 938 5 885 2771 19 3 35 chr9 39439627 39439965 -84636207 - IAPLTR2b LTR ERVK 0 327 1 5 885 1364 350 55 47 chr9 39439965 39440197 -84635975 - MTE-int LTR MaLR -643 937 717 5 885 1288 240 46 8 chr9 39441838 39442208 -84633964 - Lx5 LINE L1 0 7050 6667 5 885 2625 166 24 32 chr9 39442236 39442512 -84633660 - RLTR11A2 LTR ERVK 0 527 248 5 885 242 0 61 0 chr9 39442512 39442545 -84633627 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 885 2625 166 24 32 chr9 39442545 39442760 -84633412 - RLTR11A2 LTR ERVK -280 247 41 5 885 1558 181 63 61 chr9 39442840 39443235 -84632937 - RLTR12A LTR ERVK -6 562 167 5 885 3536 217 69 10 chr9 39443238 39444038 -84632134 - Lx5 LINE L1 -421 6629 5783 5 885 1043 153 11 5 chr9 39444047 39444238 -84631934 + L1_Mur2 LINE L1 4805 4996 -881 5 885 3306 169 55 13 chr9 39444641 39445320 -84630852 + L1_Mur2 LINE L1 4624 5330 -547 5 885 205 135 0 51 chr9 39445320 39445359 -84630813 + T-rich Low_complexity Low_complexity 4 40 0 5 885 201 74 0 0 chr9 39445364 39445391 -84630781 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 885 1410 105 14 37 chr9 39445411 39445628 -84630544 - Lx3A LINE L1 -74 6907 6696 5 885 1810 128 54 13 chr9 39445671 39445987 -84630185 - Lx3B LINE L1 -5 6968 6640 5 885 1990 184 55 77 chr9 39446000 39446453 -84629719 + L1_Mur2 LINE L1 5340 5782 -95 5 885 441 327 26 47 chr9 39446703 39446937 -84629235 + RMER15 LTR ERVL 276 504 -71 5 885 918 188 0 0 chr9 39448704 39448945 -84627227 + (TA)n Simple_repeat Simple_repeat 1 241 0 5 885 2931 132 15 0 chr9 39448946 39449407 -84626765 - Lx3B LINE L1 -3 6970 6503 5 885 3347 48 2 0 chr9 39449520 39449937 -84626235 - L1Md_F3 LINE L1 -14 6570 6153 5 885 4910 22 12 0 chr9 39449937 39450602 -84625570 + L1Md_F3 LINE L1 5493 6165 -419 5 885 21 0 0 0 chr9 39451888 39451909 -84624263 + AT_rich Low_complexity Low_complexity 1 21 0 5 886 235 263 0 13 chr9 39453328 39453405 -84622767 + RMER17A2 LTR ERVK 262 337 -569 5 886 594 0 0 0 chr9 39456817 39456883 -84619289 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 886 423 0 0 0 chr9 39456885 39456932 -84619240 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 886 1033 311 60 9 chr9 39457280 39457683 -84618489 - Lx6 LINE L1 -731 6965 6518 5 886 346 170 0 21 chr9 39457698 39457785 -84618387 + CT-rich Low_complexity Low_complexity 9 94 0 5 886 1257 50 0 27 chr9 39457785 39457970 -84618202 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 886 1586 298 33 25 chr9 39457996 39458809 -84617363 - Lx5 LINE L1 -18 7032 6455 5 886 500 246 8 0 chr9 39458801 39458927 -84617245 - L1_Mur3 LINE L1 -1346 4531 4405 5 886 1693 144 49 62 chr9 39458940 39459265 -84616907 - ORR1A4 LTR MaLR -8 321 1 5 886 1155 200 15 0 chr9 39459265 39459525 -84616647 - L1_Mur3 LINE L1 -1478 4399 4136 5 886 1774 196 175 60 chr9 39459528 39460064 -84616108 + RMER12 LTR ERVK 620 1217 -105 5 886 1530 182 20 14 chr9 39460191 39460548 -84615624 - L1_Mur3 LINE L1 -2688 3192 2834 5 886 261 250 137 32 chr9 39460551 39460646 -84615526 + 5S rRNA rRNA 1 105 -16 5 886 527 355 65 20 chr9 39460639 39460886 -84615286 - MTE-int LTR MaLR -454 1126 869 5 886 23 33 0 0 chr9 39461492 39461522 -84614650 + AT_rich Low_complexity Low_complexity 1 30 0 5 886 464 348 25 41 chr9 39462920 39463163 -84613009 + RMER15 LTR ERVL 257 495 -80 6 886 2759 139 15 2 chr9 39464554 39465021 -84611151 - L1_Mm LINE L1 -1494 4389 3917 6 886 3789 122 3 2 chr9 39465023 39465604 -84610568 + L1_Mus4 LINE L1 6055 6636 0 6 886 187 312 68 68 chr9 39466606 39466723 -84609449 + L2 LINE L2 2331 2447 -972 6 886 864 146 44 0 chr9 39467794 39467952 -84608220 + Lx4A LINE L1 6891 7055 -3 6 886 891 127 13 7 chr9 39468091 39468242 -84607930 - L1_Mur1 LINE L1 -3588 2298 2147 6 886 698 184 32 0 chr9 39468268 39468393 -84607779 - B1_Mm SINE Alu 0 147 19 6 886 230 209 0 0 chr9 39468393 39468436 -84607736 - L1_Mur1 LINE L1 -3757 2129 2087 6 886 304 191 33 11 chr9 39468521 39468611 -84607561 - Lx9 LINE L1 -7 7637 7546 6 886 2416 126 35 13 chr9 39468632 39469027 -84607145 - RLTR9E LTR ERVK 0 409 6 6 886 735 223 48 0 chr9 39469055 39469243 -84606929 - Lx9 LINE L1 -131 7513 7317 6 886 4442 57 2 16 chr9 39469534 39470106 -84606066 - LTRIS2 LTR ERV1 0 564 1 6 886 3195 154 29 14 chr9 39470177 39470709 -84605463 - Lx4A LINE L1 -657 6401 5861 6 886 7007 86 12 83 chr9 39470709 39471595 -84604577 + RLTR13D4 LTR ERVK 1 878 -155 6 886 1165 68 0 0 chr9 39471595 39471742 -84604430 + B1_Mm SINE Alu 1 147 0 6 886 7007 86 12 83 chr9 39471742 39471967 -84604205 + RLTR13D4 LTR ERVK 879 1033 0 6 886 3195 154 29 14 chr9 39471967 39471988 -84604184 - Lx4A LINE L1 -1198 5860 5840 6 886 3216 163 45 63 chr9 39471982 39472649 -84603523 + Lx4A LINE L1 6403 7057 -1 6 886 23 78 0 0 chr9 39472649 39472700 -84603472 + AT_rich Low_complexity Low_complexity 1 51 0 6 886 4524 45 9 14 chr9 39472838 39473401 -84602771 - LTRIS2 LTR ERV1 0 564 5 6 886 360 0 0 0 chr9 39475663 39475703 -84600469 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 886 342 0 0 0 chr9 39475703 39475740 -84600432 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 886 35 98 0 0 chr9 39478371 39478483 -84597689 + AT_rich Low_complexity Low_complexity 1 112 0 6 886 417 20 0 0 chr9 39478751 39478801 -84597371 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 886 861 129 0 0 chr9 39479199 39479338 -84596834 + (TG)n Simple_repeat Simple_repeat 1 139 0 6 886 359 171 0 13 chr9 39480005 39480082 -84596090 + CT-rich Low_complexity Low_complexity 1 76 0 6 886 387 0 0 0 chr9 39480082 39480125 -84596047 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 886 684 217 234 17 chr9 39480474 39480713 -84595459 - RLTR25B LTR ERVK 0 1028 738 6 886 2293 242 79 70 chr9 39480898 39481380 -84594792 - RLTR25A LTR ERVK -256 847 336 6 886 1057 95 0 13 chr9 39481380 39481529 -84594643 - B1_Mus2 SINE Alu 0 147 1 6 886 2293 242 79 70 chr9 39481529 39481886 -84594286 - RLTR25A LTR ERVK -768 335 2 6 886 342 0 0 0 chr9 39482374 39482412 -84593760 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 886 1728 299 41 22 chr9 39482423 39483001 -84593171 - Lx5 LINE L1 -17 7033 6455 6 886 926 296 5 0 chr9 39482999 39483289 -84592883 - Lx5 LINE L1 -738 6722 6214 6 886 729 183 29 0 chr9 39484534 39484709 -84591463 + CT-rich Low_complexity Low_complexity 1 180 0 6 886 336 200 0 48 chr9 39484709 39484814 -84591358 - Lx6 LINE L1 0 7460 7361 6 886 1419 347 63 18 chr9 39484814 39485357 -84590815 - MTE-int LTR MaLR -146 1434 868 6 886 212 155 12 112 chr9 39485832 39485912 -84590260 + T-rich Low_complexity Low_complexity 2 73 0 6 886 6264 148 5 10 chr9 39487233 39488295 -84587877 - Lx2 LINE L1 -14 6983 5928 6 886 450 278 79 51 chr9 39488595 39488773 -84587399 + RMER15 LTR ERVL 300 482 -93 6 886 21 36 0 0 chr9 39489640 39489668 -84586504 + AT_rich Low_complexity Low_complexity 1 28 0 6 886 641 242 173 18 chr9 39492022 39492325 -84583847 - ORR1D1 LTR MaLR -2 382 1 6 886 245 404 0 9 chr9 39494996 39495101 -84581071 + RMER12 LTR ERVK 746 849 -473 6 886 206 174 0 21 chr9 39495261 39495308 -84580864 + (TATAA)n Simple_repeat Simple_repeat 4 49 0 6 886 32 43 0 0 chr9 39496702 39496748 -84579424 + AT_rich Low_complexity Low_complexity 1 46 0 6 886 550 44 0 0 chr9 39497805 39497873 -84578299 + L1Md_F2 LINE L1 5942 6009 -575 6 886 1640 30 5 15 chr9 39497873 39498079 -84578093 + L1Md_F3 LINE L1 6367 6570 -14 6 886 4171 83 3 3 chr9 39498088 39498654 -84577518 + L1Md_F2 LINE L1 6005 6570 -12 6 886 432 0 0 0 chr9 39498754 39498802 -84577370 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 886 558 309 99 40 chr9 39498842 39499065 -84577107 - B4A SINE B4 -6 286 51 6 886 1258 87 0 11 chr9 39499636 39499821 -84576351 + L1_Mus1 LINE L1 6385 6567 0 6 886 225 0 0 0 chr9 39501088 39501113 -84575059 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 886 441 0 0 0 chr9 39502729 39502778 -84573394 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 886 564 15 0 0 chr9 39502881 39502946 -84573226 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 886 710 43 11 0 chr9 39502946 39503040 -84573132 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 4 886 870 262 143 4 chr9 39503211 39503395 -84572777 + Lx6 LINE L1 6575 6791 -669 5 886 496 0 31 0 chr9 39503395 39503459 -84572713 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 6 886 870 262 143 4 chr9 39503459 39503554 -84572618 + Lx6 LINE L1 6792 6892 -568 5 886 3838 130 28 2 chr9 39503634 39504251 -84571921 + Lx LINE L1 6022 6654 0 7 886 1163 174 85 19 chr9 39504304 39504662 -84571510 + RLTR20A LTR ERVK 6 472 -62 8 886 1482 146 10 55 chr9 39504662 39504953 -84571219 + Lx5 LINE L1 5702 5979 -1071 9 886 1696 208 33 72 chr9 39504938 39505327 -84570845 + Lx5 LINE L1 6672 7045 -5 9 886 769 236 43 0 chr9 39505406 39505567 -84570605 - MTD LTR MaLR -229 190 23 1 886 1208 249 78 10 chr9 39505799 39506250 -84569922 + Lx7 LINE L1 5527 6010 -1686 1 886 2082 75 41 65 chr9 39508935 39509275 -84566897 + IAPLTR1a_Mm LTR ERVK 1 332 -5 1 886 468 86 0 0 chr9 39511314 39511384 -84564788 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 886 21 0 0 0 chr9 39511789 39511810 -84564362 + AT_rich Low_complexity Low_complexity 1 21 0 1 886 3392 33 4 0 chr9 39511938 39512444 -84563728 + L1Md_F2 LINE L1 5459 5967 -615 1 886 707 269 0 0 chr9 39512922 39513063 -84563109 - B1_Mur1 SINE Alu -3 146 6 1 886 793 151 157 44 chr9 39513228 39513444 -84562728 - Lx9 LINE L1 -6 7638 7390 1 886 3290 36 2 2 chr9 39513444 39513838 -84562334 - MTA_Mm LTR MaLR -2 394 1 1 886 793 151 157 44 chr9 39513838 39513870 -84562302 - Lx9 LINE L1 -255 7389 7362 1 886 414 69 0 0 chr9 39513999 39514057 -84562115 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 886 474 285 56 42 chr9 39514057 39514200 -84561972 - RSINE1 SINE B4 -18 147 3 2 886 27 49 0 0 chr9 39514212 39514253 -84561919 + AT_rich Low_complexity Low_complexity 1 41 0 2 886 2020 54 0 11 chr9 39515240 39515502 -84560670 + L1_Mus1 LINE L1 6309 6567 0 2 886 318 330 119 60 chr9 39517735 39518440 -84557732 - L1MC3 LINE L1 -777 7008 6262 2 886 741 12 0 0 chr9 39518807 39518893 -84557279 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 886 481 333 56 24 chr9 39520313 39520775 -84555397 + L1MA10 LINE L1 5843 6319 -15 2 886 964 316 89 19 chr9 39521675 39522426 -84553746 - L1MB7 LINE L1 -60 6124 5321 2 886 231 204 41 0 chr9 39522704 39522753 -84553419 + B3A SINE B2 2 52 -146 2 886 1662 286 23 13 chr9 39522864 39523338 -84552834 - Lx5 LINE L1 -26 7434 6956 2 886 430 65 25 25 chr9 39523410 39523489 -84552683 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 2 886 3059 226 38 3 chr9 39523501 39524619 -84551553 - Lx5 LINE L1 -628 6422 5247 2 886 267 219 0 15 chr9 39524886 39524951 -84551221 + L1Md_F LINE L1 104 167 -6352 3 886 896 209 15 5 chr9 39524957 39525159 -84551013 - Lx5 LINE L1 -615 5262 5059 2 886 1012 96 7 14 chr9 39525189 39525337 -84550835 - B1_Mus1 SINE Alu 0 148 2 3 886 25 31 0 0 chr9 39525672 39525704 -84550468 + AT_rich Low_complexity Low_complexity 1 32 0 3 886 285 75 0 0 chr9 39525719 39525759 -84550413 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 886 387 0 0 0 chr9 39525759 39525801 -84550371 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 886 267 31 0 0 chr9 39525801 39525832 -84550340 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 886 26 50 0 0 chr9 39526177 39526217 -84549955 + AT_rich Low_complexity Low_complexity 1 40 0 3 886 21 36 0 0 chr9 39526522 39526550 -84549622 + AT_rich Low_complexity Low_complexity 1 28 0 3 886 630 244 24 0 chr9 39529526 39529649 -84546523 + B1_Mur3 SINE Alu 12 137 -12 3 886 606 39 0 0 chr9 39529649 39529726 -84546446 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 886 571 233 22 29 chr9 39529726 39529739 -84546433 + B1_Mus1 SINE Alu 137 148 0 4 886 1703 214 21 34 chr9 39529941 39530323 -84545849 - RLTR31_Mm LTR ERVK -6 555 179 4 886 438 357 12 60 chr9 39530684 39530851 -84545321 - RSINE1 SINE B4 0 165 7 4 886 291 348 71 9 chr9 39530938 39531280 -84544892 - L1MB7 LINE L1 -79 6099 5726 4 886 332 244 0 89 chr9 39532568 39532703 -84543469 + RMER17A LTR ERVK 346 468 -283 4 886 622 254 7 0 chr9 39532898 39533036 -84543136 - B1_Mur1 SINE Alu -5 144 6 4 886 205 140 17 17 chr9 39533041 39533099 -84543073 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 4 886 318 106 0 0 chr9 39533371 39533418 -84542754 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 886 432 272 86 62 chr9 39534115 39534336 -84541836 - ORR1E LTR MaLR -104 255 27 4 886 4718 96 140 10 chr9 39534336 39535123 -84541049 - RMER17D LTR ERVK 0 889 1 4 886 432 272 86 62 chr9 39535123 39535144 -84541028 - ORR1E LTR MaLR -333 26 7 4 886 416 329 86 32 chr9 39535649 39535869 -84540303 + B4A SINE B4 10 241 -51 5 886 943 129 52 26 chr9 39536126 39536317 -84539855 + Lx LINE L1 6459 6654 0 5 886 216 216 0 0 chr9 39536391 39536442 -84539730 + CT-rich Low_complexity Low_complexity 3 53 0 5 886 186 43 0 0 chr9 39536653 39536676 -84539496 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 886 241 236 76 89 chr9 39536907 39536986 -84539186 + Lx7 LINE L1 7060 7137 -559 5 886 231 36 0 0 chr9 39537286 39537314 -84538858 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5 886 376 285 103 11 chr9 39537326 39537500 -84538672 - L1MC3 LINE L1 -187 7598 7409 5 886 307 309 11 0 chr9 39537610 39537704 -84538468 - L1MC3 LINE L1 -657 7128 7034 5 886 499 260 93 11 chr9 39538110 39538293 -84537879 - B3A SINE B2 0 198 1 5 886 266 305 8 71 chr9 39540977 39541104 -84535068 - MLT1A1 LTR MaLR 0 408 290 5 886 495 333 82 44 chr9 39541749 39542019 -84534153 + B4 SINE B4 1 280 -12 5 886 321 26 0 0 chr9 39542038 39542076 -84534096 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 886 456 19 0 0 chr9 39542360 39542413 -84533759 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 886 264 300 99 10 chr9 39542562 39542754 -84533418 - L1MB7 LINE L1 -183 6001 5793 6 886 373 331 101 36 chr9 39542765 39543551 -84532621 - L1MB7 LINE L1 -746 5400 4564 6 886 297 0 0 0 chr9 39544340 39544373 -84531799 + (T)n Simple_repeat Simple_repeat 1 33 0 6 886 304 208 39 29 chr9 39545978 39546082 -84530090 + Lx7 LINE L1 7287 7391 -305 6 886 309 68 0 0 chr9 39546103 39546147 -84530025 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 886 424 219 97 41 chr9 39546178 39546373 -84529799 + Lx7 LINE L1 7475 7680 -16 6 886 183 80 0 0 chr9 39546618 39546643 -84529529 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 886 472 302 190 29 chr9 39546643 39546877 -84529295 - Lx8 LINE L1 -9 7464 7178 6 886 4963 39 20 0 chr9 39546877 39547470 -84528702 + RLTR1D LTR ERV1 1 605 0 6 886 472 302 190 29 chr9 39547470 39547545 -84528627 - Lx8 LINE L1 -296 7177 7105 6 886 1831 106 60 3 chr9 39547586 39547888 -84528284 + RLTR9F LTR ERVK 93 411 -4 6 886 337 279 215 32 chr9 39548287 39548598 -84527574 - RLTR9A LTR ERVK 0 368 1 7 886 5280 67 0 3 chr9 39548778 39549453 -84526719 - L1_Mus1 LINE L1 -1 6566 5894 7 886 526 276 129 43 chr9 39549635 39549798 -84526374 + B3A SINE B2 6 182 -16 7 886 267 103 0 0 chr9 39549807 39549846 -84526326 + (GGGAGA)n Simple_repeat Simple_repeat 5 43 0 7 886 556 295 29 198 chr9 39549998 39550247 -84525925 - B4 SINE B4 -16 276 78 7 886 180 77 0 0 chr9 39550247 39550273 -84525899 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 7 886 556 295 29 198 chr9 39550273 39550336 -84525836 - B4 SINE B4 -215 77 17 7 886 1173 21 0 0 chr9 39550668 39550808 -84525364 + (TG)n Simple_repeat Simple_repeat 2 141 0 7 886 27 0 0 0 chr9 39551655 39551682 -84524490 + AT_rich Low_complexity Low_complexity 1 27 0 7 886 686 323 84 59 chr9 39552010 39552323 -84523849 - L1MC3 LINE L1 -620 7165 6833 7 886 1524 130 346 19 chr9 39552323 39552684 -84523488 - RLTR45 LTR ERVK 0 482 4 7 886 686 323 84 59 chr9 39552684 39553001 -84523171 - L1MC3 LINE L1 -953 6832 6519 7 886 337 379 13 38 chr9 39553420 39553579 -84522593 + RSINE1 SINE B4 11 165 0 8 886 639 59 20 10 chr9 39553579 39553681 -84522491 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 8 886 4805 102 17 9 chr9 39554291 39554986 -84521186 - Lx LINE L1 -5 6649 5949 8 886 438 282 119 7 chr9 39555339 39555482 -84520690 + L1MB1 LINE L1 5833 5991 -198 8 886 384 287 0 42 chr9 39555714 39555856 -84520316 - L1_Rod LINE L1 -177 5670 5535 8 886 474 101 0 0 chr9 39556130 39556199 -84519973 + (TTTA)n Simple_repeat Simple_repeat 3 71 0 8 886 687 209 0 23 chr9 39556203 39556335 -84519837 - B1_Mus1 SINE Alu -14 134 6 8 886 760 252 57 47 chr9 39556353 39556649 -84519523 - L1_Mur3 LINE L1 -315 5565 5267 8 886 577 333 140 19 chr9 39556752 39557282 -84518890 - L1M4 LINE L1 -848 5298 4705 8 886 245 255 60 2 chr9 39557282 39557355 -84518817 + PB1D9 SINE Alu 54 149 0 8 886 285 319 91 12 chr9 39557393 39557558 -84518614 - L1M4 LINE L1 -1443 4703 4526 8 886 183 129 0 0 chr9 39557568 39557599 -84518573 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 886 2315 32 3 3 chr9 39558911 39559195 -84516977 + L1Md_F3 LINE L1 6300 6583 -1 9 886 594 284 162 50 chr9 39559648 39560092 -84516080 + Lx8 LINE L1 6975 7468 -5 9 886 1150 237 156 29 chr9 39560601 39560979 -84515193 + RMER2 LTR ERV1 1 426 -141 9 886 414 254 45 0 chr9 39561149 39561259 -84514913 + Lx9 LINE L1 6913 7027 -617 9 886 2025 181 66 15 chr9 39561487 39561880 -84514292 - MTC LTR MaLR -8 413 1 9 886 675 25 0 0 chr9 39561952 39562033 -84514139 + (TC)n Simple_repeat Simple_repeat 2 82 0 9 886 548 310 49 15 chr9 39562525 39562728 -84513444 - RMER15 LTR ERVL -73 502 293 9 886 249 355 35 101 chr9 39562742 39562911 -84513261 - RMER15 LTR ERVL -414 161 4 9 886 626 283 46 30 chr9 39563439 39563636 -84512536 - RLTR16 LTR ERVK -265 240 41 9 886 280 327 54 36 chr9 39563882 39564104 -84512068 - L1MC3 LINE L1 -155 7630 7405 9 886 24 53 0 0 chr9 39564573 39564611 -84511561 + AT_rich Low_complexity Low_complexity 1 38 0 1 886 287 331 69 60 chr9 39564621 39565100 -84511072 - L1MC3 LINE L1 -1067 6718 6236 9 886 391 328 53 34 chr9 39566892 39567154 -84509018 + L1MB1 LINE L1 5856 6122 -67 1 886 677 172 38 0 chr9 39567227 39567384 -84508788 + Lx9 LINE L1 7476 7638 -6 1 886 857 274 166 44 chr9 39567488 39567873 -84508299 + MTD-int LTR MaLR 820 1251 -7 1 886 634 319 137 76 chr9 39567878 39568009 -84508163 + MTD LTR MaLR 2 122 -297 1 886 1249 107 6 0 chr9 39568009 39568186 -84507986 - B2_Mm1t SINE B2 -14 179 2 1 886 634 319 137 76 chr9 39568186 39568322 -84507850 + MTD LTR MaLR 123 254 -165 1 886 756 0 0 0 chr9 39568322 39568406 -84507766 + (TTC)n Simple_repeat Simple_repeat 1 84 0 1 886 634 319 137 76 chr9 39568406 39568440 -84507732 + MTD LTR MaLR 255 332 -87 1 886 313 22 21 21 chr9 39568440 39568487 -84507685 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 886 634 319 137 76 chr9 39568487 39568499 -84507673 + MTD LTR MaLR 333 345 -74 1 886 1591 155 29 157 chr9 39568499 39568950 -84507222 - RLTR9C LTR ERVK 0 393 1 1 886 634 319 137 76 chr9 39568950 39569027 -84507145 + MTD LTR MaLR 346 417 -2 1 886 801 201 180 0 chr9 39569203 39569442 -84506730 - Lx9 LINE L1 -1 7643 7362 1 886 232 252 30 30 chr9 39569499 39569663 -84506509 + (TTATA)n Simple_repeat Simple_repeat 3 166 0 1 886 855 188 6 19 chr9 39569665 39569822 -84506350 - Lx9 LINE L1 -264 7380 7226 1 886 392 325 75 16 chr9 39570071 39570390 -84505782 - L1MC3 LINE L1 -453 5721 5384 9 886 1888 233 109 22 chr9 39570396 39570884 -84505288 - RMER12B LTR ERVK -867 537 8 1 886 22 0 0 0 chr9 39571045 39571067 -84505105 + AT_rich Low_complexity Low_complexity 1 22 0 1 886 719 278 28 31 chr9 39571143 39571429 -84504743 + L1_Mur3 LINE L1 5335 5619 -261 1 886 398 245 70 0 chr9 39571603 39571729 -84504443 - L1MD LINE L1 -651 5591 5457 1 886 251 197 16 0 chr9 39571730 39571791 -84504381 - Lx8 LINE L1 -5 7468 7407 1 886 465 307 60 73 chr9 39571796 39572086 -84504086 - RLTR20C LTR ERVK -200 363 49 1 886 2834 213 76 18 chr9 39572119 39572803 -84503369 - L1_Mur2 LINE L1 -3 5874 5151 1 886 1992 139 31 8 chr9 39572826 39573105 -84503067 - L1_Mur2 LINE L1 -3540 2337 2050 1 886 387 0 0 0 chr9 39573105 39573148 -84503024 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 886 378 0 0 0 chr9 39573148 39573189 -84502983 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 886 1992 139 31 8 chr9 39573189 39573263 -84502909 - L1_Mur2 LINE L1 -3828 2049 1976 1 886 2645 198 43 18 chr9 39573294 39573901 -84502271 - Lx4B LINE L1 -757 6301 5680 1 886 419 159 0 0 chr9 39573901 39573970 -84502202 - Lx4B LINE L1 -395 5491 5423 1 886 1015 220 5 5 chr9 39573972 39574173 -84501999 - MTC LTR MaLR -220 201 1 1 886 4248 143 61 21 chr9 39574357 39575372 -84500800 - L1VL1 LINE L1 -2420 1278 216 1 886 522 0 0 0 chr9 39575458 39575516 -84500656 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 886 941 297 19 75 chr9 39575543 39575903 -84500269 + ORR1D2 LTR MaLR 1 340 -30 1 886 613 317 53 11 chr9 39576164 39576448 -84499724 - Lx7 LINE L1 -1792 5904 5609 1 886 1437 317 69 47 chr9 39576461 39577525 -84498647 + Lx7 LINE L1 4533 5619 -261 1 886 225 244 37 0 chr9 39577704 39577786 -84498386 + Lx8 LINE L1 7389 7473 0 1 886 354 289 36 18 chr9 39577781 39577961 -84498211 + L1_Rod LINE L1 5431 5644 -545 1 886 29 70 0 0 chr9 39577996 39578053 -84498119 + AT_rich Low_complexity Low_complexity 1 57 0 1 886 1769 225 11 16 chr9 39580467 39580846 -84495326 - RMER19C LTR ERVK 0 611 235 1 886 349 191 16 0 chr9 39580896 39580959 -84495213 - RMER19C LTR ERVK -547 64 1 1 886 302 290 105 0 chr9 39581234 39581358 -84494814 + L1M4 LINE L1 4034 4170 -1976 1 886 519 316 170 20 chr9 39581443 39581889 -84494283 + L1M4 LINE L1 4876 5388 -758 1 886 451 242 12 6 chr9 39581889 39582051 -84494121 + Lx9 LINE L1 7481 7643 -1 1 886 964 281 105 37 chr9 39582228 39582611 -84493561 - MTD LTR MaLR -4 415 6 1 110 22009 136 16 20 chr9 39582611 39584450 -84491722 + L1VL1 LINE L1 246 2069 -3814 1 887 1174 68 0 0 chr9 39584450 39584596 -84491576 - B1_Mm SINE Alu 0 147 2 1 887 22009 129 8 9 chr9 39584596 39587358 -84488814 + L1VL1 LINE L1 2070 4834 -1049 1 887 5031 109 18 15 chr9 39587358 39588141 -84488031 + L1_Mus3 LINE L1 5851 6635 -3 1 887 753 272 130 45 chr9 39588166 39588567 -84487605 - MTC-int LTR MaLR -4 1254 820 1 887 29 0 0 0 chr9 39588659 39588688 -84487484 + AT_rich Low_complexity Low_complexity 1 29 0 1 887 885 101 195 0 chr9 39588688 39588837 -84487335 + B2_Mm2 SINE B2 2 179 -16 1 887 608 196 58 43 chr9 39588842 39588969 -84487203 - Lx9 LINE L1 0 7644 7522 1 887 366 80 0 0 chr9 39588969 39589019 -84487153 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 887 608 196 58 43 chr9 39589019 39589099 -84487073 - Lx9 LINE L1 -123 7521 7434 1 887 489 326 19 19 chr9 39589157 39589448 -84486724 - L1MB1 LINE L1 -72 6117 5828 1 887 489 364 94 49 chr9 39591257 39591462 -84484710 + L1MC3 LINE L1 6242 6478 -1307 1 887 842 110 7 0 chr9 39591462 39591617 -84484555 + (TC)n Simple_repeat Simple_repeat 1 156 0 1 887 489 364 94 49 chr9 39591617 39592287 -84483885 + L1MC3 LINE L1 6479 7155 -630 1 887 366 154 35 0 chr9 39592297 39592383 -84483789 + RLTR41 LTR ERV1 1 131 -315 1 887 4036 101 13 3 chr9 39592383 39593308 -84482864 - L1VL4 LINE L1 -2267 1292 358 1 887 348 296 64 27 chr9 39593601 39593820 -84482352 - L1MC3 LINE L1 -15 7770 7544 1 887 17667 81 3 4 chr9 39593820 39596891 -84479281 - L1Md_F2 LINE L1 -1 6581 3514 1 887 232 323 30 24 chr9 39597256 39597424 -84478748 - L1MC3 LINE L1 -744 7041 6873 1 887 400 350 82 62 chr9 39597447 39597800 -84478372 - L1MC3 LINE L1 -948 6837 6465 1 887 1032 106 18 0 chr9 39597800 39597970 -84478202 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 1 887 400 350 82 62 chr9 39597970 39598201 -84477971 - L1MC3 LINE L1 -1321 6464 6241 1 887 939 267 123 30 chr9 39599102 39599500 -84476672 + MTD-int LTR MaLR 820 1254 -4 1 887 581 357 54 29 chr9 39599507 39599787 -84476385 + MTD LTR MaLR 5 291 -128 1 887 863 187 146 0 chr9 39600002 39600248 -84475924 - Lx9 LINE L1 -1 7643 7362 1 887 48 60 0 0 chr9 39600355 39600438 -84475734 + AT_rich Low_complexity Low_complexity 1 83 0 1 887 734 197 38 6 chr9 39600448 39600606 -84475566 - Lx9 LINE L1 -258 7386 7224 1 887 486 313 71 25 chr9 39600884 39601530 -84474642 - L1MC3 LINE L1 -496 5682 5008 1 887 301 33 18 118 chr9 39601704 39601874 -84474298 + (TA)n Simple_repeat Simple_repeat 2 154 0 1 887 31 0 0 0 chr9 39601874 39601905 -84474267 + AT_rich Low_complexity Low_complexity 1 31 0 1 887 660 312 46 15 chr9 39601936 39602326 -84473846 - L1MC3 LINE L1 -1385 4761 4360 1 887 368 364 82 13 chr9 39602378 39602609 -84473563 - L1MC3 LINE L1 -1886 4260 4014 1 887 2380 112 35 0 chr9 39604305 39604679 -84471493 - L1_Mus3 LINE L1 0 6638 6252 1 887 3019 71 5 2 chr9 39604679 39605074 -84471098 - MTA_Mm LTR MaLR 0 396 1 1 887 6237 147 54 41 chr9 39605074 39605162 -84471010 - MTA_Mm-int LTR MaLR 0 1258 1180 1 887 1085 75 0 26 chr9 39605162 39605313 -84470859 + B1_Mm SINE Alu 1 147 0 1 887 6237 147 54 41 chr9 39605313 39605774 -84470398 - MTA_Mm-int LTR MaLR -79 1179 701 1 887 5579 85 45 23 chr9 39605774 39606644 -84469528 - RMER17D LTR ERVK 0 889 1 1 887 6237 147 54 41 chr9 39606644 39607333 -84468839 - MTA_Mm-int LTR MaLR -558 700 3 1 887 2780 94 5 10 chr9 39607333 39607731 -84468441 - MTA_Mm LTR MaLR 0 396 1 1 887 18244 110 31 80 chr9 39607731 39610330 -84465842 - L1_Mus3 LINE L1 -382 6256 3673 1 887 989 100 64 17 chr9 39610330 39610503 -84465669 - RLTR13D3 LTR ERVK -108 1006 826 1 887 18244 110 31 80 chr9 39610503 39611035 -84465137 - L1_Mus3 LINE L1 -382 3672 3142 1 887 318 26 0 0 chr9 39611035 39611074 -84465098 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 887 18244 110 35 90 chr9 39611074 39611547 -84464625 - L1_Mus3 LINE L1 -2742 3141 2666 1 887 1236 219 4 0 chr9 39611544 39611781 -84464391 - L1VL1 LINE L1 -6161 261 24 1 887 29 0 0 0 chr9 39611783 39611812 -84464360 + AT_rich Low_complexity Low_complexity 1 29 0 1 887 207 0 0 0 chr9 39612543 39612566 -84463606 + (A)n Simple_repeat Simple_repeat 1 23 0 1 887 201 213 0 0 chr9 39612947 39612994 -84463178 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 1 887 524 326 60 20 chr9 39613306 39613506 -84462666 - RMER15 LTR ERVL -73 502 295 1 887 288 308 44 51 chr9 39614331 39614625 -84461547 - L1MC3 LINE L1 -143 7642 7351 1 887 487 319 99 32 chr9 39614694 39615199 -84460973 - L1MC3 LINE L1 -619 7166 6628 1 887 399 183 0 0 chr9 39615393 39615475 -84460697 + GA-rich Low_complexity Low_complexity 3 84 0 1 887 1001 76 0 14 chr9 39615457 39615586 -84460586 + (GAAA)n Simple_repeat Simple_repeat 1 127 0 1 887 1193 91 11 0 chr9 39615586 39615762 -84460410 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 1 887 1001 76 0 14 chr9 39615762 39615779 -84460393 + (GAAA)n Simple_repeat Simple_repeat 4 20 0 1 887 25 65 0 0 chr9 39616032 39616078 -84460094 + AT_rich Low_complexity Low_complexity 1 46 0 1 887 1023 270 113 44 chr9 39616900 39617307 -84458865 + MTD-int LTR MaLR 820 1254 -4 1 887 1007 271 85 39 chr9 39617314 39617644 -84458528 + MTD LTR MaLR 5 349 -70 1 887 799 206 112 0 chr9 39617838 39618061 -84458111 - Lx9 LINE L1 -2 7642 7395 1 887 53 73 0 0 chr9 39618158 39618267 -84457905 + AT_rich Low_complexity Low_complexity 1 109 0 1 887 858 153 30 18 chr9 39618271 39618437 -84457735 - Lx9 LINE L1 -252 7392 7225 1 887 225 315 107 0 chr9 39618766 39618915 -84457257 - L1M5 LINE L1 -530 5634 5470 1 887 538 165 0 0 chr9 39618932 39619035 -84457137 - Lx LINE L1 -6 6648 6546 1 887 20523 164 22 61 chr9 39619035 39620655 -84455517 - Lx LINE L1 -271 6383 4741 1 887 287 25 0 24 chr9 39620655 39620696 -84455476 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 887 20523 167 16 83 chr9 39620696 39621160 -84455012 - Lx LINE L1 -1146 4740 4306 1 887 406 272 36 54 chr9 39621160 39621327 -84454845 - RNLTR23 LTR ERVK 0 642 479 1 887 20523 167 16 83 chr9 39621327 39625502 -84450670 - Lx LINE L1 -1146 4305 384 1 887 570 321 131 14 chr9 39625514 39626822 -84449350 - L1M4 LINE L1 -693 5478 4017 1 887 25 31 0 0 chr9 39628581 39628613 -84447559 + AT_rich Low_complexity Low_complexity 1 32 0 1 887 880 207 10 31 chr9 39628641 39628835 -84447337 - Lx4B LINE L1 -13 7045 6856 1 887 580 240 207 8 chr9 39628908 39629170 -84447002 - RLTR17 LTR ERVK -70 622 309 1 887 395 156 9 135 chr9 39629171 39629282 -84446890 - RLTR17 LTR ERVK -491 201 105 1 887 22 0 0 0 chr9 39630149 39630171 -84446001 + AT_rich Low_complexity Low_complexity 1 22 0 1 887 2433 239 70 4 chr9 39630172 39630730 -84445442 - Lx5 LINE L1 -73 6977 6383 1 887 5159 170 37 39 chr9 39630729 39631799 -84444373 - L1_Mur2 LINE L1 -3545 2332 1266 1 887 231 61 0 0 chr9 39631799 39631832 -84444340 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 887 221 0 0 33 chr9 39631837 39631867 -84444305 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 887 5159 176 25 18 chr9 39631867 39632290 -84443882 - L1_Mur2 LINE L1 -5825 1261 831 1 887 278 341 44 24 chr9 39632308 39632557 -84443615 - L1_Mur2 LINE L1 -6339 747 494 1 887 652 308 54 32 chr9 39632602 39632976 -84443196 - L1_Rod LINE L1 -1070 5073 4625 1 887 699 29 29 0 chr9 39632976 39633080 -84443092 + L1Md_F3 LINE L1 6476 6582 -2 1 887 581 320 100 48 chr9 39633080 39633184 -84442988 - L1_Rod LINE L1 -1485 4658 4570 1 887 701 244 99 14 chr9 39633205 39633485 -84442687 + Lx8 LINE L1 5577 5909 -1787 1 887 1026 271 62 35 chr9 39633699 39634039 -84442133 - ORR1E LTR MaLR -6 353 5 1 887 438 114 0 0 chr9 39634066 39634136 -84442036 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 887 1357 326 22 26 chr9 39634141 39634648 -84441524 + Lx8 LINE L1 6194 6698 -775 1 887 2514 83 3 17 chr9 39634651 39635006 -84441166 + MTB_Mm LTR MaLR 1 350 -57 1 887 729 168 0 11 chr9 39635041 39635185 -84440987 + RMER1A Other Other 690 891 -175 1 887 319 315 0 11 chr9 39635152 39635242 -84440930 + Lx6 LINE L1 6075 6163 -1297 1 887 235 259 48 91 chr9 39635292 39635479 -84440693 + Lx7 LINE L1 7491 7669 -27 1 887 2252 241 35 8 chr9 39635911 39636430 -84439742 - Lx4B LINE L1 -4 7054 6522 1 887 23 33 0 0 chr9 39636630 39636660 -84439512 + AT_rich Low_complexity Low_complexity 1 30 0 1 887 233 222 14 0 chr9 39636889 39636961 -84439211 + Lx3A LINE L1 6903 6975 -6 1 887 27 0 0 0 chr9 39636969 39636996 -84439176 + AT_rich Low_complexity Low_complexity 1 27 0 1 887 656 242 85 11 chr9 39636998 39637179 -84438993 - B3 SINE B2 -10 206 18 2 887 239 294 94 14 chr9 39637169 39637307 -84438865 + Helitron1Na_Mam RC Helitron 876 1024 -38 2 887 193 119 23 23 chr9 39637613 39637656 -84438516 + CT-rich Low_complexity Low_complexity 3 45 0 2 887 24 0 0 0 chr9 39637904 39637928 -84438244 + AT_rich Low_complexity Low_complexity 1 24 0 2 887 9959 96 1 28 chr9 39638019 39639571 -84436601 + Lx3_Mus LINE L1 3258 4767 -1119 2 887 9121 98 28 18 chr9 39639572 39640941 -84435231 + Lx3_Mus LINE L1 5627 7009 0 2 887 21 0 0 0 chr9 39641229 39641250 -84434922 + AT_rich Low_complexity Low_complexity 1 21 0 2 887 922 141 12 12 chr9 39641448 39641620 -84434552 - L1Md_F3 LINE L1 -14 6570 6399 2 887 5851 60 9 0 chr9 39641620 39642698 -84433474 + L1Md_F2 LINE L1 5242 6329 -253 2 887 7936 39 1 4 chr9 39642789 39644332 -84431840 - L1Md_F2 LINE L1 0 6582 5047 2 887 239 280 0 0 chr9 39646655 39646705 -84429467 + G-rich Low_complexity Low_complexity 3 52 0 2 887 927 156 0 0 chr9 39646706 39646885 -84429287 + GA-rich Low_complexity Low_complexity 2 180 0 2 887 213 39 0 0 chr9 39648876 39648902 -84427270 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 887 7084 4 0 0 chr9 39649117 39649934 -84426238 - L1Md_A LINE L1 0 6582 5798 2 887 5723 142 31 25 chr9 39650512 39651569 -84424603 - L1_Mur2 LINE L1 -1392 4485 3422 2 887 345 75 43 29 chr9 39651588 39651657 -84424515 - L1Md_F2 LINE L1 0 6582 6513 2 887 13691 162 28 154 chr9 39651804 39652301 -84423871 + Lx4B LINE L1 2467 2972 -2905 2 887 3008 79 0 15 chr9 39652301 39652712 -84423460 + L1Md_F2 LINE L1 6178 6582 0 2 887 13691 162 28 154 chr9 39652712 39653846 -84422326 + Lx4B LINE L1 2973 3595 -2282 2 887 8119 48 1 0 chr9 39653846 39654841 -84421331 + L1Md_F2 LINE L1 5587 6582 0 2 887 13691 162 28 154 chr9 39654841 39657000 -84419172 + Lx4B LINE L1 3596 5776 -101 2 887 973 207 8 4 chr9 39657014 39657252 -84418920 + Lx4B LINE L1 5920 6158 -900 2 887 9805 66 1 6 chr9 39657239 39659108 -84417064 + L1Md_F2 LINE L1 4595 6454 -128 2 887 2357 180 188 6 chr9 39659105 39659636 -84416536 + Lx4B LINE L1 6324 6951 -107 2 887 33 25 0 0 chr9 39659675 39659715 -84416457 + AT_rich Low_complexity Low_complexity 1 40 0 2 887 26 64 0 0 chr9 39659759 39659806 -84416366 + AT_rich Low_complexity Low_complexity 1 47 0 2 887 1622 301 30 9 chr9 39659814 39660279 -84415893 - Lx6 LINE L1 -27 7433 6959 2 887 242 192 295 0 chr9 39660280 39660358 -84415814 + B1_Mus2 SINE Alu 26 126 -21 2 887 285 29 0 0 chr9 39660460 39660494 -84415678 + (T)n Simple_repeat Simple_repeat 1 34 0 2 887 1132 82 0 0 chr9 39660494 39660640 -84415532 - B1_Mm SINE Alu 0 147 2 2 887 194 160 0 20 chr9 39660734 39660785 -84415387 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 2 887 373 280 137 8 chr9 39660940 39661174 -84414998 - L1MA6 LINE L1 -61 6239 5976 2 887 241 362 0 0 chr9 39661339 39661397 -84414775 + RSINE1 SINE B4 108 165 0 2 887 563 248 0 18 chr9 39661575 39661686 -84414486 + B1_Mur4 SINE Alu 39 147 -3 2 887 6345 103 65 0 chr9 39661850 39662771 -84413401 - Lx LINE L1 0 6654 5674 2 887 1939 92 15 0 chr9 39662771 39663033 -84413139 + L1_Mus1 LINE L1 6302 6567 0 2 887 888 94 0 0 chr9 39663040 39663168 -84413004 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 2 887 2229 224 18 138 chr9 39663168 39663348 -84412824 - L1_Mur2 LINE L1 -219 5661 5566 2 887 6114 119 34 6 chr9 39663348 39664314 -84411858 + Lx3B LINE L1 5981 6973 0 2 887 2393 171 19 31 chr9 39664314 39664844 -84411328 - L1_Mur2 LINE L1 -315 5565 5060 2 887 28130 15 20 20 chr9 39664841 39666490 -84409682 - L1Md_A LINE L1 0 6582 4912 2 887 227 183 46 77 chr9 39666490 39666555 -84409617 + RMER20A LTR ERVK 186 248 -268 2 887 28130 15 20 20 chr9 39666555 39669577 -84406595 - L1Md_A LINE L1 0 4911 1846 2 887 3298 157 18 78 chr9 39669572 39670193 -84405979 - L1_Mur2 LINE L1 -794 5083 4496 2 887 2234 112 12 0 chr9 39670193 39670516 -84405656 - ORR1A2 LTR MaLR 0 327 1 2 887 3298 157 18 78 chr9 39670516 39670655 -84405517 - L1_Mur2 LINE L1 -1382 4495 4368 2 887 4456 126 118 0 chr9 39670652 39671438 -84404734 - Lx2 LINE L1 -39 6958 6080 2 887 1910 141 41 11 chr9 39671438 39671803 -84404369 - L1_Mur2 LINE L1 -2763 3114 2739 2 887 1626 209 53 99 chr9 39671920 39672376 -84403796 - RLTR41 LTR ERV1 -11 435 1 2 887 239 351 39 28 chr9 39672488 39672846 -84403326 - L1MC4a LINE L1 -814 7068 6707 2 887 543 53 0 0 chr9 39672896 39672971 -84403201 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 887 225 196 0 0 chr9 39672974 39673025 -84403147 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 887 639 102 29 14 chr9 39673162 39673302 -84402870 + (CAGAGA)n Simple_repeat Simple_repeat 3 144 0 2 887 28 29 0 0 chr9 39674951 39674986 -84401186 + AT_rich Low_complexity Low_complexity 1 35 0 2 887 337 284 8 14 chr9 39675347 39675546 -84400626 + L1MB2 LINE L1 5828 6026 -163 2 887 594 201 6 51 chr9 39675709 39675765 -84400407 + Lx9 LINE L1 7469 7517 -127 2 887 336 83 0 0 chr9 39675765 39675813 -84400359 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 887 594 201 6 51 chr9 39675813 39675934 -84400238 + Lx9 LINE L1 7518 7638 -6 2 887 928 117 156 0 chr9 39675939 39676093 -84400079 - B2_Mm2 SINE B2 -16 179 2 2 887 1491 42 16 0 chr9 39676148 39676338 -84399834 + L1_Mus1 LINE L1 6372 6564 -3 2 887 249 33 0 0 chr9 39676381 39676411 -84399761 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 887 752 274 118 49 chr9 39676485 39676892 -84399280 + MTD-int LTR MaLR 820 1254 -4 2 887 949 272 124 42 chr9 39676899 39677279 -84398893 + MTD LTR MaLR 5 415 -4 2 887 828 178 151 12 chr9 39677459 39677704 -84398468 - Lx9 LINE L1 -4 7640 7362 2 887 249 224 18 45 chr9 39677792 39677904 -84398268 + (TTATA)n Simple_repeat Simple_repeat 3 111 0 2 887 747 213 6 6 chr9 39677907 39678063 -84398109 - Lx9 LINE L1 -263 7381 7226 2 887 330 365 51 7 chr9 39678364 39678718 -84397454 - L1M4 LINE L1 -513 5667 5297 2 887 368 299 152 28 chr9 39678790 39679079 -84397093 - L1M4 LINE L1 -946 5200 4876 2 887 2891 81 23 5 chr9 39679489 39679885 -84396287 - RLTR9D LTR ERVK 0 403 1 2 887 2263 179 100 121 chr9 39679960 39680096 -84396076 + RMER19C LTR ERVK 1 184 -427 2 887 1500 48 0 16 chr9 39680096 39680285 -84395887 - B2_Mm1t SINE B2 -6 187 2 2 887 2263 179 100 121 chr9 39680285 39680769 -84395403 + RMER19C LTR ERVK 185 608 -3 2 887 245 301 0 0 chr9 39683311 39683394 -84392778 - L1M2 LINE L1 -726 5586 5504 2 887 7761 31 0 0 chr9 39683394 39684844 -84391328 - L1Md_T LINE L1 0 6582 5133 2 887 710 322 29 5 chr9 39685155 39685361 -84390811 + Tigger5 DNA MER2_type 20 230 -2176 2 887 655 263 6 11 chr9 39685392 39685573 -84390599 + Tigger5 DNA MER2_type 2178 2357 -49 2 887 407 335 85 24 chr9 39685742 39686049 -84390123 - MER58B DNA MER1_type 0 341 1 2 887 441 0 0 0 chr9 39686514 39686563 -84389609 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2 887 27 62 0 0 chr9 39686770 39686818 -84389354 + AT_rich Low_complexity Low_complexity 1 48 0 2 887 447 241 113 0 chr9 39686841 39686974 -84389198 + Lx7 LINE L1 7095 7242 -454 2 887 280 105 35 17 chr9 39687170 39687228 -84388944 + CT-rich Low_complexity Low_complexity 3 61 0 2 887 522 119 0 0 chr9 39687229 39687313 -84388859 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 887 313 333 48 0 chr9 39687381 39687486 -84388686 + PB1D7 SINE Alu 6 115 -5 2 887 35258 36 12 15 chr9 39687535 39689184 -84386988 - L1Md_T LINE L1 -1 6581 4914 2 887 229 183 46 77 chr9 39689184 39689249 -84386923 + RMER20A LTR ERVK 186 248 -268 2 887 35258 36 12 15 chr9 39689249 39692586 -84383586 - L1Md_T LINE L1 -1 4913 1537 2 887 1648 31 0 5 chr9 39692586 39692779 -84383393 + B2_Mm1t SINE B2 1 192 -1 2 887 35258 119 57 18 chr9 39692779 39694167 -84382005 - L1Md_T LINE L1 -4347 1536 143 2 887 517 279 101 34 chr9 39694231 39694468 -84381704 - Lx8 LINE L1 -9 7464 7212 2 887 1006 310 79 52 chr9 39694476 39695548 -84380624 - Lx7 LINE L1 -261 5619 4519 2 887 536 309 54 11 chr9 39695548 39695826 -84380346 + Lx7 LINE L1 5609 5898 -1798 2 887 918 292 22 67 chr9 39696093 39696449 -84379723 - ORR1D2 LTR MaLR -30 340 1 2 887 432 0 0 0 chr9 39696479 39696527 -84379645 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 887 21156 151 28 9 chr9 39696617 39701182 -84374990 + L1_Mus2 LINE L1 395 5057 -826 2 887 2798 19 5 127 chr9 39701184 39701602 -84374570 - IAPLTR1_Mm LTR ERVK 0 367 1 2 887 27471 21 1 2 chr9 39701602 39704879 -84371293 - IAPEz-int LTR ERVK 0 6481 3210 2 887 5994 108 130 39 chr9 39704878 39706051 -84370121 - IAPEz-int LTR ERVK -5168 1313 34 2 887 2798 19 5 127 chr9 39706061 39706479 -84369693 - IAPLTR1_Mm LTR ERVK 0 367 1 2 887 7167 94 4 8 chr9 39706480 39708002 -84368170 + L1_Mus2 LINE L1 5057 6566 0 2 887 4764 89 27 0 chr9 39708005 39708664 -84367508 + L1_Mus3 LINE L1 5957 6633 -5 2 887 1428 350 39 19 chr9 39708720 39709540 -84366632 + Lx8 LINE L1 6312 7147 -326 2 887 1303 151 117 21 chr9 39709541 39709722 -84366450 + RMER1A Other Other 697 909 -121 2 887 360 0 0 0 chr9 39709722 39709762 -84366410 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 887 1303 151 117 21 chr9 39709762 39709870 -84366302 + RMER1A Other Other 910 1013 -17 2 887 1522 226 37 29 chr9 39709968 39710452 -84365720 + Lx7 LINE L1 5682 6169 -1527 2 887 348 67 20 82 chr9 39710504 39710602 -84365570 + T-rich Low_complexity Low_complexity 4 95 0 2 887 49 32 0 0 chr9 39710682 39710745 -84365427 + AT_rich Low_complexity Low_complexity 1 63 0 2 887 1531 167 43 20 chr9 39711090 39711390 -84364782 - Lx5 LINE L1 -3 7047 6741 2 887 2351 180 37 56 chr9 39711406 39711421 -84364751 - RLTR20B3 LTR ERVK -21 556 542 2 887 387 60 0 0 chr9 39711421 39711471 -84364701 + (TGG)n Simple_repeat Simple_repeat 2 51 0 2 887 2351 180 37 56 chr9 39711471 39711995 -84364177 - RLTR20B3 LTR ERVK -36 541 27 2 887 1066 207 9 5 chr9 39712005 39712219 -84363953 - Lx5 LINE L1 -338 6712 6498 2 887 189 107 0 0 chr9 39712319 39712347 -84363825 + (CATA)n Simple_repeat Simple_repeat 1 28 0 2 887 282 305 38 97 chr9 39712842 39713027 -84363145 + RLTR31_Mur LTR ERVK 376 549 -4 2 887 22 70 0 0 chr9 39713682 39713725 -84362447 + AT_rich Low_complexity Low_complexity 1 43 0 2 887 447 19 0 0 chr9 39713819 39713871 -84362301 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 887 372 240 201 0 chr9 39713923 39714077 -84362095 - Lx7 LINE L1 -335 7361 7177 2 887 22 0 0 0 chr9 39714487 39714509 -84361663 + AT_rich Low_complexity Low_complexity 1 22 0 2 888 594 118 0 0 chr9 39717156 39717249 -84358923 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 888 440 62 0 15 chr9 39717249 39717314 -84358858 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 888 389 308 92 88 chr9 39719727 39720155 -84356017 - MLT2B5 LTR ERVL -50 465 5 2 888 4236 103 21 7 chr9 39720515 39721123 -84355049 - Lx3_Mus LINE L1 0 7009 6393 2 888 209 33 33 0 chr9 39721158 39721188 -84354984 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 888 219 170 0 0 chr9 39721233 39721280 -84354892 + T-rich Low_complexity Low_complexity 1 47 0 2 888 1189 62 0 0 chr9 39721578 39721724 -84354448 - B1_Mus1 SINE Alu 0 148 3 2 888 3676 97 18 26 chr9 39721932 39722548 -84353624 - Lx3_Mus LINE L1 -586 6423 5825 2 888 553 323 86 6 chr9 39722609 39722771 -84353401 - B3 SINE B2 -40 176 2 3 888 2258 147 8 0 chr9 39722829 39723209 -84352963 - Lx5 LINE L1 -1034 6016 5634 3 888 4479 215 52 7 chr9 39723208 39724196 -84351976 + Lx5 LINE L1 6016 7047 -3 3 888 1614 275 25 33 chr9 39724213 39724518 -84351654 - Lx6 LINE L1 -17 7443 7143 3 888 4207 151 80 84 chr9 39724518 39725422 -84350750 + RMER19B LTR ERVK 3 902 0 3 888 1614 275 25 33 chr9 39725422 39725605 -84350567 - Lx6 LINE L1 -318 7142 6959 3 888 572 196 0 0 chr9 39725605 39725707 -84350465 + B1_Mus2 SINE Alu 25 126 -21 3 888 387 0 0 0 chr9 39725796 39725839 -84350333 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 888 312 308 58 0 chr9 39726179 39726335 -84349837 - L1MA6 LINE L1 -193 6107 5943 3 888 28 0 0 0 chr9 39726397 39726425 -84349747 + AT_rich Low_complexity Low_complexity 1 28 0 3 888 553 184 9 28 chr9 39726514 39726620 -84349552 + B1_Mur4 SINE Alu 38 141 -9 3 888 21 82 0 0 chr9 39727049 39727098 -84349074 + AT_rich Low_complexity Low_complexity 1 49 0 3 888 304 356 33 13 chr9 39727290 39727441 -84348731 + MamRep605 Unknown Unknown 596 749 -127 3 888 34297 51 15 6 chr9 39727778 39733013 -84343159 + L1Md_T LINE L1 302 5586 -297 3 888 8539 30 0 0 chr9 39733013 39734008 -84342164 + L1Md_T LINE L1 5587 6581 -1 3 888 313 333 48 0 chr9 39734057 39734162 -84342010 - PB1D7 SINE Alu -5 115 6 3 888 555 122 0 0 chr9 39734230 39734320 -84341852 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 888 338 159 14 0 chr9 39734320 39734389 -84341783 + GA-rich Low_complexity Low_complexity 2 71 0 3 888 447 241 113 0 chr9 39734585 39734718 -84341454 - Lx7 LINE L1 -454 7242 7095 3 888 27 62 0 0 chr9 39734741 39734789 -84341383 + AT_rich Low_complexity Low_complexity 1 48 0 3 888 414 0 0 0 chr9 39734996 39735042 -84341130 + (TAA)n Simple_repeat Simple_repeat 3 48 0 3 888 407 335 85 24 chr9 39735507 39735814 -84340358 + MER58B DNA MER1_type 1 341 0 3 888 655 263 6 11 chr9 39735983 39736164 -84340008 - Tigger5 DNA MER2_type -49 2357 2178 3 888 710 322 29 5 chr9 39736195 39736401 -84339771 - Tigger5 DNA MER2_type -2176 230 20 3 888 622 35 24 0 chr9 39737021 39737106 -84339066 + (GA)n Simple_repeat Simple_repeat 1 87 0 3 888 316 298 16 24 chr9 39737193 39737317 -84338855 - L1M4 LINE L1 -1609 4537 4415 3 888 2171 158 29 0 chr9 39737318 39737698 -84338474 + Lx2 LINE L1 6606 6996 -1 3 888 374 247 20 20 chr9 39737737 39737836 -84338336 - MTE2b LTR MaLR 0 379 281 3 888 7859 87 10 12 chr9 39737853 39738948 -84337224 - Lx3_Mus LINE L1 0 7009 5917 3 888 677 58 0 0 chr9 39738948 39739035 -84337137 + Lx3_Mus LINE L1 5821 5907 -1102 3 888 1319 17 8 17 chr9 39739038 39739275 -84336897 + (GAAA)n Simple_repeat Simple_repeat 1 235 0 3 888 18347 170 89 23 chr9 39739276 39739509 -84336663 + Lx LINE L1 1418 1651 -4235 3 888 1002 104 7 0 chr9 39739509 39739644 -84336528 + B1_Mus1 SINE Alu 1 136 -12 3 888 567 0 0 0 chr9 39739646 39739709 -84336463 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 3 888 18347 170 89 23 chr9 39739709 39742427 -84333745 + Lx LINE L1 1652 4630 -1256 3 888 317 24 24 0 chr9 39742427 39742469 -84333703 + (CAA)n Simple_repeat Simple_repeat 2 44 0 3 888 18347 161 51 12 chr9 39742469 39744462 -84331710 + Lx LINE L1 4631 6653 -1 3 888 238 297 113 28 chr9 39747340 39747482 -84328690 + L2 LINE L2 2290 2443 -976 3 888 408 20 0 0 chr9 39751027 39751076 -84325096 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 888 22 56 0 0 chr9 39751140 39751176 -84324996 + AT_rich Low_complexity Low_complexity 1 36 0 3 888 394 336 50 8 chr9 39751191 39751311 -84324861 - RSINE1 SINE B4 -37 128 4 3 888 285 343 100 0 chr9 39751396 39751536 -84324636 - L2 LINE L2 -749 2670 2517 3 888 678 212 0 3 chr9 39752586 39752736 -84323436 - Lx7 LINE L1 -1177 5804 5655 3 888 912 273 48 0 chr9 39753172 39753403 -84322769 + RMER1B Other Other 7 248 -818 3 888 3845 213 52 20 chr9 39753404 39754675 -84321497 + RMER1A Other Other 22 1014 -16 3 888 252 0 0 0 chr9 39754676 39754704 -84321468 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 888 351 0 0 0 chr9 39754704 39754742 -84321430 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 888 608 291 144 61 chr9 39754743 39755105 -84321067 - MTC-int LTR MaLR -227 1031 640 3 888 515 364 0 24 chr9 39755267 39755436 -84320736 + RSINE1 SINE B4 1 165 0 3 888 291 73 55 0 chr9 39755485 39755540 -84320632 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 888 21 0 0 0 chr9 39755673 39755694 -84320478 + AT_rich Low_complexity Low_complexity 1 21 0 3 888 27 0 0 0 chr9 39755879 39755906 -84320266 + AT_rich Low_complexity Low_complexity 1 27 0 3 888 485 170 0 11 chr9 39755928 39756017 -84320155 - B1_Mur3 SINE Alu -1 148 61 3 888 1530 132 63 15 chr9 39756017 39756168 -84320004 + Lx LINE L1 6367 6518 -136 3 888 246 62 0 0 chr9 39756168 39756200 -84319972 + (TGGG)n Simple_repeat Simple_repeat 2 33 0 3 888 1530 132 63 15 chr9 39756200 39756318 -84319854 + Lx LINE L1 6519 6647 -7 3 888 731 198 107 4 chr9 39756355 39756484 -84319688 + Lx9 LINE L1 7360 7498 -146 3 888 219 36 0 0 chr9 39756484 39756512 -84319660 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 888 731 198 107 4 chr9 39756512 39756635 -84319537 + Lx9 LINE L1 7499 7637 -7 3 888 684 47 0 78 chr9 39756647 39756741 -84319431 - L1Md_T LINE L1 0 6582 6495 3 888 2700 31 2 213 chr9 39756741 39757233 -84318939 + RLTR10 LTR ERVK 1 388 -2 3 888 684 47 0 78 chr9 39757233 39757254 -84318918 - L1Md_T LINE L1 -88 6494 6476 3 888 891 163 120 5 chr9 39758605 39758796 -84317376 - URR1A DNA MER1_type -1 225 13 3 888 1018 274 21 67 chr9 39760046 39760418 -84315754 + ORR1E LTR MaLR 1 355 -4 3 888 927 304 43 0 chr9 39760589 39760892 -84315280 + Lx8 LINE L1 6594 6909 -564 3 888 215 194 0 0 chr9 39760898 39760934 -84315238 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 888 911 156 12 0 chr9 39760934 39761107 -84315065 + (TATATG)n Simple_repeat Simple_repeat 4 178 0 3 888 795 309 32 23 chr9 39761107 39761389 -84314783 + Lx8 LINE L1 6964 7262 -382 3 888 776 167 98 35 chr9 39761580 39761754 -84314418 + B2_Mm2 SINE B2 1 185 -10 3 888 181 241 77 88 chr9 39762744 39762835 -84313337 + L4 LINE RTE 1208 1297 -732 3 888 222 91 0 0 chr9 39766769 39766802 -84309370 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 888 3657 72 4 0 chr9 39767590 39768062 -84308110 + L1_Mus1 LINE L1 6094 6567 0 3 888 266 150 0 77 chr9 39768133 39768198 -84307974 - MYSERV6-int LTR ERVK -1145 7814 7755 3 888 285 200 38 95 chr9 39768276 39768381 -84307791 - RLTR10 LTR ERVK 0 390 292 3 888 1219 67 6 12 chr9 39768409 39768576 -84307596 - MMERVK10C-int LTR ERVK -7415 166 1 3 888 3078 42 5 35 chr9 39768578 39768978 -84307194 - RLTR10 LTR ERVK -2 388 1 3 888 6814 101 37 19 chr9 39768979 39770041 -84306131 - Lx3_Mus LINE L1 -65 6944 5864 3 888 13901 118 60 15 chr9 39770038 39772985 -84303187 - L1_Mur1 LINE L1 -2422 3464 206 3 888 246 343 75 34 chr9 39773179 39773499 -84302673 + L1M5 LINE L1 4013 4345 -1801 3 888 274 296 32 8 chr9 39773647 39773773 -84302399 + L1M5 LINE L1 4569 4697 -1449 3 888 35 54 0 0 chr9 39774323 39774379 -84301793 + AT_rich Low_complexity Low_complexity 1 56 0 3 888 302 145 32 0 chr9 39774752 39774814 -84301358 + GA-rich Low_complexity Low_complexity 3 66 0 3 888 654 49 0 0 chr9 39774853 39774935 -84301237 + (GAGAA)n Simple_repeat Simple_repeat 2 83 0 3 888 310 283 230 0 chr9 39775573 39775686 -84300486 + B3A SINE B2 5 143 -55 3 888 456 51 0 0 chr9 39775694 39775753 -84300419 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 888 3308 121 11 2 chr9 39775845 39776382 -84299790 - Lx3A LINE L1 -416 6565 6024 3 888 1067 58 50 0 chr9 39776560 39776699 -84299473 + B1_Mm SINE Alu 2 147 0 3 888 278 178 58 19 chr9 39776760 39776863 -84299309 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 888 21 0 0 0 chr9 39777314 39777335 -84298837 + AT_rich Low_complexity Low_complexity 1 21 0 3 888 430 339 40 0 chr9 39777463 39777587 -84298585 - ID_B1 SINE B4 -13 211 83 3 888 270 257 68 0 chr9 39777710 39777784 -84298388 + MLT1E1 LTR MaLR 11 89 -480 3 888 682 98 0 0 chr9 39777968 39778060 -84298112 + L1_Mus4 LINE L1 6100 6191 -445 3 888 1273 91 10 5 chr9 39778060 39778258 -84297914 + L1_Mus4 LINE L1 6437 6635 -1 3 888 300 259 42 59 chr9 39778313 39778432 -84297740 + MLT1E1 LTR MaLR 514 630 -24 3 888 8649 134 12 1 chr9 39779261 39780586 -84295586 + Lx2 LINE L1 5652 6991 -6 3 888 32 0 0 0 chr9 39780793 39780825 -84295347 + AT_rich Low_complexity Low_complexity 1 32 0 3 888 1126 89 12 0 chr9 39780991 39781160 -84295012 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 3 888 678 295 45 11 chr9 39783252 39783516 -84292656 + L1M2 LINE L1 5450 5722 -569 3 888 656 283 51 21 chr9 39783524 39783759 -84292413 - Lx8 LINE L1 -1058 6415 6174 3 888 3899 154 45 78 chr9 39783983 39784818 -84291354 - RLTR13C2 LTR ERVK 0 808 1 3 888 314 350 99 12 chr9 39784976 39785138 -84291034 - L1MB7 LINE L1 -116 6068 5893 3 888 1327 231 60 30 chr9 39786050 39786385 -84289787 + Lx6 LINE L1 7071 7415 -45 3 888 25 0 0 0 chr9 39786808 39786833 -84289339 + AT_rich Low_complexity Low_complexity 1 25 0 3 888 1181 196 80 67 chr9 39787063 39787491 -84288681 - Lx2B LINE L1 -2 7006 6618 3 888 225 0 0 0 chr9 39788060 39788085 -84288087 + (T)n Simple_repeat Simple_repeat 1 25 0 3 888 381 185 0 12 chr9 39788353 39788435 -84287737 - L1_Mus3 LINE L1 -19 6619 6539 3 888 6770 78 8 4 chr9 39788432 39789350 -84286822 + L1_Mus3 LINE L1 5718 6638 0 3 888 1299 88 11 0 chr9 39789527 39789708 -84286464 + B2_Mm1t SINE B2 2 184 -9 3 888 675 207 5 15 chr9 39789974 39790110 -84286062 + B1_Mur1 SINE Alu 14 143 -6 3 888 197 299 141 35 chr9 39790356 39790498 -84285674 + L3b LINE CR1 73 229 -253 3 888 387 0 0 0 chr9 39790542 39790585 -84285587 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 888 257 312 82 10 chr9 39790771 39790868 -84285304 + ORR1E LTR MaLR 22 125 -234 3 888 879 206 21 21 chr9 39791395 39791583 -84284589 + B2_Mm2 SINE B2 1 188 -7 3 888 254 317 17 0 chr9 39792067 39792187 -84283985 + L1M5 LINE L1 4544 4665 -1481 3 888 403 288 44 38 chr9 39792447 39792606 -84283566 - RSINE1 SINE B4 -2 163 4 3 888 33420 71 3 16 chr9 39793186 39798338 -84277834 + L1Md_F2 LINE L1 503 5586 -297 4 888 8041 44 2 3 chr9 39798338 39799323 -84276849 + L1Md_F2 LINE L1 5587 6570 -12 4 888 264 59 0 0 chr9 39799348 39799382 -84276790 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 4 888 495 0 0 0 chr9 39801011 39801066 -84275106 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 888 513 0 0 0 chr9 39802714 39802771 -84273401 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 888 21 36 0 0 chr9 39803131 39803159 -84273013 + AT_rich Low_complexity Low_complexity 1 28 0 4 888 203 188 0 20 chr9 39803315 39803340 -84272832 + (TATATG)n Simple_repeat Simple_repeat 3 27 0 4 888 1146 122 0 0 chr9 39803340 39803520 -84272652 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 888 203 188 0 20 chr9 39803520 39803543 -84272629 + (TATATG)n Simple_repeat Simple_repeat 4 26 0 4 888 259 279 91 55 chr9 39803985 39804095 -84272077 - PB1D10 SINE Alu -1 116 3 4 888 251 357 100 45 chr9 39805801 39806091 -84270081 - MLT1D LTR MaLR -175 330 25 4 888 1153 58 0 0 chr9 39806216 39806355 -84269817 + B1_Mm SINE Alu 3 141 -6 4 888 21 0 0 0 chr9 39806357 39806378 -84269794 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 781 316 78 25 chr9 39806401 39806836 -84269336 - Lx8 LINE L1 -4 7469 7012 4 888 708 280 118 15 chr9 39811445 39811717 -84264455 + Lx7 LINE L1 7037 7336 -360 4 888 30 27 0 0 chr9 39811865 39811902 -84264270 + AT_rich Low_complexity Low_complexity 1 37 0 4 888 691 330 25 5 chr9 39812600 39812798 -84263374 - B3 SINE B2 -6 210 9 4 888 339 25 0 0 chr9 39812920 39812960 -84263212 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 888 225 0 0 0 chr9 39812960 39812984 -84263188 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 888 183 341 54 31 chr9 39815697 39815827 -84260345 + MIRb SINE MIR 126 258 -10 4 888 21 0 0 0 chr9 39816493 39816514 -84259658 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 324 70 0 0 chr9 39816783 39816826 -84259346 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 4 888 310 361 108 45 chr9 39818295 39818811 -84257361 - L1M5 LINE L1 -1141 5005 4457 4 888 270 288 74 99 chr9 39820810 39820972 -84255200 - RSINE1 SINE B4 -3 162 5 4 888 30010 129 20 14 chr9 39821594 39825775 -84250397 + L1_Mus2 LINE L1 383 4601 -1282 4 888 1111 59 0 0 chr9 39825775 39825911 -84250261 + B1_Mm SINE Alu 2 137 -10 4 888 30010 94 12 15 chr9 39825911 39827890 -84248282 + L1_Mus2 LINE L1 4602 6566 0 4 888 432 83 0 5 chr9 39828007 39828077 -84248095 + L1_Mus4 LINE L1 5689 5755 -128 4 888 200 34 0 33 chr9 39828159 39828189 -84247983 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 888 258 272 175 0 chr9 39829562 39829665 -84246507 - MER44A DNA MER2_type -190 149 29 4 888 217 219 27 0 chr9 39829789 39829862 -84246310 + GA-rich Low_complexity Low_complexity 2 76 0 4 888 405 0 0 0 chr9 39830993 39831038 -84245134 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 888 753 70 0 0 chr9 39831038 39831138 -84245034 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 4 888 564 15 0 0 chr9 39831162 39831227 -84244945 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 888 337 310 35 76 chr9 39831433 39831604 -84244568 - MIRb SINE MIR -7 261 98 4 888 220 159 22 79 chr9 39832637 39832726 -84243446 + (TTATA)n Simple_repeat Simple_repeat 1 84 0 4 888 186 118 0 0 chr9 39834816 39834850 -84241322 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 888 1857 177 115 42 chr9 39834910 39835094 -84241078 + RMER4A LTR ERVK 1 181 -285 4 888 352 119 0 0 chr9 39835094 39835161 -84241011 - Lx LINE L1 0 6654 6588 4 888 1857 177 115 42 chr9 39835161 39835340 -84240832 + RMER4A LTR ERVK 182 393 -73 4 888 549 0 0 0 chr9 39835340 39835401 -84240771 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 888 1857 177 115 42 chr9 39835401 39835461 -84240711 + RMER4A LTR ERVK 394 455 -11 4 888 21 36 0 0 chr9 39835496 39835524 -84240648 + AT_rich Low_complexity Low_complexity 1 28 0 4 888 203 179 0 0 chr9 39835569 39835608 -84240564 + T-rich Low_complexity Low_complexity 1 39 0 4 888 4893 80 10 3 chr9 39835641 39836318 -84239854 + L1_Mus3 LINE L1 5938 6619 -19 4 888 370 305 38 9 chr9 39836333 39836439 -84239733 + PB1 SINE Alu 10 118 -9 4 888 892 221 5 10 chr9 39836474 39836680 -84239492 - Lx6 LINE L1 -184 7276 7072 4 888 1480 244 94 20 chr9 39836708 39837102 -84239070 - Lx6 LINE L1 -313 7147 6725 4 888 7059 75 15 0 chr9 39837076 39838739 -84237433 - L1Md_F2 LINE L1 -4 6578 4895 4 888 1582 26 0 0 chr9 39838743 39838933 -84237239 + L1Md_F2 LINE L1 5397 5586 -297 4 888 8005 51 1 2 chr9 39838933 39839918 -84236254 + L1Md_F2 LINE L1 5587 6570 -12 4 888 331 241 88 12 chr9 39840255 39840335 -84235837 + RSINE1 SINE B4 3 88 -77 4 888 32 0 0 0 chr9 39840436 39840468 -84235704 + AT_rich Low_complexity Low_complexity 1 32 0 4 888 851 281 42 119 chr9 39840493 39840974 -84235198 + RLTR20B2 LTR ERVK 26 466 -94 4 888 417 20 0 0 chr9 39840974 39841024 -84235148 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 888 851 315 69 99 chr9 39841024 39841116 -84235056 + RLTR20B2 LTR ERVK 445 533 -1 4 888 25029 175 95 28 chr9 39841518 39842587 -84233585 + Lx3_Mus LINE L1 15 1442 -4444 4 888 2462 70 0 0 chr9 39842587 39842900 -84233272 + L1_Mus2 LINE L1 6253 6565 -1 4 888 25029 97 13 18 chr9 39842900 39843510 -84232662 + Lx3_Mus LINE L1 1443 2000 -3886 4 888 5175 46 0 11 chr9 39843510 39844152 -84232020 + L1Md_F2 LINE L1 5948 6582 0 4 888 25029 97 13 18 chr9 39844152 39845008 -84231164 + Lx3_Mus LINE L1 2001 2869 -3017 4 888 648 0 0 0 chr9 39845008 39845080 -84231092 + (GAAA)n Simple_repeat Simple_repeat 3 74 0 4 13 25029 97 13 18 chr9 39845080 39847451 -84228721 + Lx3_Mus LINE L1 2870 5256 -630 4 889 33507 43 8 4 chr9 39848355 39853549 -84222623 + L1Md_T LINE L1 278 5589 -297 4 889 8442 35 0 0 chr9 39853549 39854542 -84221630 + L1Md_T LINE L1 5590 6582 -3 4 889 28 48 0 0 chr9 39854948 39854990 -84221182 + AT_rich Low_complexity Low_complexity 1 42 0 4 889 8167 103 28 13 chr9 39854990 39856672 -84219500 + Lx3_Mus LINE L1 5246 6931 -78 4 889 560 257 91 0 chr9 39856767 39856954 -84219218 + MER33 DNA MER1_type 52 255 -69 4 889 414 0 0 0 chr9 39856973 39857019 -84219153 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 889 892 294 35 16 chr9 39857019 39857275 -84218897 - B4A SINE B4 -26 266 6 4 889 295 221 25 25 chr9 39857267 39857346 -84218826 + MER33 DNA MER1_type 242 320 -4 4 889 239 153 145 48 chr9 39857413 39857475 -84218697 + MLT1D LTR MaLR 3 70 -435 4 889 391 371 37 51 chr9 39857591 39857807 -84218365 + MLT1D LTR MaLR 221 433 -72 4 889 186 43 0 0 chr9 39861980 39862003 -84214169 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 889 288 0 0 0 chr9 39862174 39862206 -84213966 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 889 1086 225 5 0 chr9 39862258 39862471 -84213701 - B3 SINE B2 -1 215 2 4 889 30 0 0 0 chr9 39862481 39862511 -84213661 + AT_rich Low_complexity Low_complexity 1 30 0 4 889 664 211 53 46 chr9 39862684 39862955 -84213217 + ORR1A4 LTR MaLR 1 232 -162 4 889 621 222 130 14 chr9 39862937 39863083 -84213089 + B3 SINE B2 54 216 0 4 889 496 258 70 48 chr9 39863147 39863420 -84212752 + L1MA5 LINE L1 5733 6011 -289 4 889 302 367 22 43 chr9 39863431 39863616 -84212556 - RMER15 LTR ERVL -17 558 378 4 889 262 237 102 51 chr9 39864129 39864227 -84211945 + PB1 SINE Alu 25 127 0 4 889 239 316 24 48 chr9 39864237 39864320 -84211852 + ID4_ SINE ID 3 83 0 4 889 676 297 47 50 chr9 39864488 39864807 -84211365 + Lx8 LINE L1 7154 7471 -2 4 889 613 279 86 52 chr9 39864973 39865303 -84210869 + MLT1A1 LTR MaLR 5 400 -8 4 889 202 180 0 32 chr9 39865317 39865380 -84210792 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 889 944 184 85 29 chr9 39866012 39866258 -84209914 + RMER1C Other Other 1083 1342 0 4 889 31 26 0 0 chr9 39867879 39867917 -84208255 + AT_rich Low_complexity Low_complexity 1 38 0 4 889 248 320 0 58 chr9 39867936 39868052 -84208120 + B1F1 SINE Alu 2 102 -15 4 889 833 102 0 8 chr9 39869226 39869354 -84206818 + L1VL1 LINE L1 2 128 -6294 4 889 1878 38 46 4 chr9 39869357 39869598 -84206574 + L1Md_F3 LINE L1 6326 6576 -8 4 889 5949 73 1 3 chr9 39869622 39870394 -84205778 + L1Md_F2 LINE L1 5800 6570 -12 4 889 506 167 116 96 chr9 39870920 39871066 -84205106 - RLTR14 LTR ERV1 -132 250 102 4 889 30 0 0 0 chr9 39871247 39871277 -84204895 + AT_rich Low_complexity Low_complexity 1 30 0 4 889 2672 73 0 17 chr9 39871277 39871637 -84204535 + L1_Mus2 LINE L1 6212 6565 -1 4 889 27 0 0 0 chr9 39871672 39871699 -84204473 + AT_rich Low_complexity Low_complexity 1 27 0 4 889 36906 5 0 0 chr9 39871700 39877280 -84198892 + L1Md_A LINE L1 7 5586 -297 4 889 9073 2 0 0 chr9 39877280 39878276 -84197896 + L1Md_A LINE L1 5587 6582 0 4 889 482 0 17 0 chr9 39878291 39878349 -84197823 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 4 889 514 253 112 28 chr9 39878349 39878528 -84197644 - Lx6 LINE L1 -20 7440 7247 4 889 23 33 0 0 chr9 39879093 39879123 -84197049 + AT_rich Low_complexity Low_complexity 1 30 0 4 889 269 291 61 48 chr9 39879543 39879774 -84196398 - L1M5 LINE L1 -404 5775 5542 4 889 654 13 0 0 chr9 39879775 39879850 -84196322 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 889 485 345 7 13 chr9 39879945 39880095 -84196077 - RSINE1 SINE B4 -14 151 3 4 889 2440 66 0 20 chr9 39883556 39883897 -84192275 - L1_Mm LINE L1 -257 5626 5293 4 889 922 287 34 161 chr9 39884293 39884903 -84191269 + MT2A LTR ERVL 1 533 0 4 889 188 34 0 33 chr9 39885050 39885080 -84191092 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 889 21 57 0 0 chr9 39886120 39886155 -84190017 + AT_rich Low_complexity Low_complexity 1 35 0 4 889 362 248 0 0 chr9 39886914 39887015 -84189157 - L1MA5A LINE L1 -469 5828 5703 4 889 204 125 0 0 chr9 39887207 39887239 -84188933 + (CTG)n Simple_repeat Simple_repeat 2 33 0 4 889 3649 197 54 74 chr9 39887701 39888010 -84188162 - RLTR21 LTR ERVK 0 1572 1247 4 889 405 0 0 0 chr9 39888010 39888055 -84188117 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 889 575 112 10 0 chr9 39888060 39888158 -84188014 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 889 3649 197 54 74 chr9 39888158 39888269 -84187903 - RLTR21 LTR ERVK -327 1245 1164 4 889 748 108 23 0 chr9 39888269 39888398 -84187774 + (CATA)n Simple_repeat Simple_repeat 3 134 0 4 889 3649 197 54 74 chr9 39888398 39889001 -84187171 - RLTR21 LTR ERVK -409 1163 562 4 889 22067 107 22 23 chr9 39889002 39890598 -84185574 + L1_Mur1 LINE L1 2109 3657 -2229 5 889 567 0 0 0 chr9 39890598 39890661 -84185511 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 889 22067 107 22 23 chr9 39890661 39892741 -84183431 + L1_Mur1 LINE L1 3658 5779 -107 5 889 734 143 19 52 chr9 39892764 39892919 -84183253 + Lx3B LINE L1 6821 6970 -3 5 889 3859 115 23 3 chr9 39892933 39893499 -84182673 - RLTR21 LTR ERVK -995 577 1 4 889 200 331 81 24 chr9 39893620 39893744 -84182428 - MIRm SINE MIR -98 178 48 5 889 195 42 0 0 chr9 39893842 39893866 -84182306 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 889 1162 119 0 6 chr9 39893871 39894040 -84182132 - B2_Mm2 SINE B2 -19 176 9 5 889 205 167 0 0 chr9 39894161 39894197 -84181975 + (GTTTG)n Simple_repeat Simple_repeat 3 38 0 5 889 373 256 35 0 chr9 39894732 39894818 -84181354 - Lx8 LINE L1 -191 7282 7194 5 889 300 221 0 0 chr9 39895104 39895172 -84181000 - Lx7 LINE L1 -1908 5788 5721 5 889 1625 58 0 0 chr9 39895234 39895441 -84180731 + L1Md_F3 LINE L1 6363 6569 -15 5 889 2345 268 97 15 chr9 39895481 39896492 -84179680 - Lx7 LINE L1 -811 5069 3976 5 889 277 333 16 0 chr9 39896792 39896918 -84179254 - MLT1B LTR MaLR -208 182 55 5 889 278 0 54 0 chr9 39897257 39897294 -84178878 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 889 432 228 193 0 chr9 39901681 39901878 -84174294 - Lx9 LINE L1 -6 7638 7404 5 889 223 175 15 31 chr9 39901918 39901983 -84174189 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 5 889 21 36 0 0 chr9 39902016 39902044 -84174128 + AT_rich Low_complexity Low_complexity 1 28 0 5 889 348 324 37 16 chr9 39902255 39902443 -84173729 - L1M3c LINE L1 -5618 523 332 5 889 762 287 129 12 chr9 39903486 39903812 -84172360 - MTE2b LTR MaLR -13 366 3 5 889 318 258 20 51 chr9 39904016 39904114 -84172058 + RMER15 LTR ERVL 65 159 -416 5 889 659 289 198 4 chr9 39904115 39904362 -84171810 + RMER15 LTR ERVL 278 572 -3 5 889 707 93 0 18 chr9 39904555 39904665 -84171507 + (GAAA)n Simple_repeat Simple_repeat 4 111 0 5 889 283 293 112 30 chr9 39904903 39905072 -84171100 + Lx8 LINE L1 7264 7446 -27 5 889 3465 32 136 0 chr9 39905111 39905545 -84170627 - MT2_Mm LTR ERVL 0 493 1 5 889 1012 219 43 5 chr9 39905809 39906020 -84170152 - ORR1D1 LTR MaLR -6 368 150 5 889 1892 130 86 26 chr9 39906016 39906355 -84169817 + ORR1B1 LTR MaLR 36 394 0 5 889 539 199 49 22 chr9 39906355 39906490 -84169682 - ORR1D1 LTR MaLR -223 161 1 5 889 225 359 96 48 chr9 39906713 39906921 -84169251 + MIRb SINE MIR 34 251 -17 5 889 497 275 47 0 chr9 39906927 39907076 -84169096 - HAL1-2a_MD LINE L1 -522 2502 2347 5 889 881 262 226 33 chr9 39907084 39907514 -84168658 - RMER20B LTR ERVK -36 591 79 5 889 324 347 0 0 chr9 39909216 39909291 -84166881 + RSINE1 SINE B4 12 86 -79 5 889 784 132 92 7 chr9 39909291 39909444 -84166728 + Lx LINE L1 6487 6652 -2 5 889 1658 177 60 22 chr9 39909476 39909846 -84166326 - ORR1C2 LTR MaLR 0 384 1 5 889 248 303 49 29 chr9 39909846 39909948 -84166224 + PB1D10 SINE Alu 3 106 -11 5 889 643 285 99 20 chr9 39910313 39910657 -84165515 + L1MA7 LINE L1 4408 4778 -1368 5 889 785 287 58 19 chr9 39910720 39911242 -84164930 + L1MC LINE L1 2681 3222 -2924 5 889 1178 68 0 0 chr9 39911278 39911424 -84164748 - B1_Mus2 SINE Alu 0 147 2 5 889 350 279 83 136 chr9 39911424 39911689 -84164483 + L1M2 LINE L1 4532 4782 -1361 5 889 8802 60 8 5 chr9 39911988 39913183 -84162989 + L1Md_F2 LINE L1 4388 5586 -297 5 889 7729 62 1 1 chr9 39913183 39914212 -84161960 + L1Md_F2 LINE L1 5587 6582 0 5 889 3392 169 31 4 chr9 39914213 39914892 -84161280 + L1_Mm LINE L1 5101 5797 -86 5 889 464 208 38 0 chr9 39915332 39915438 -84160734 + Lx4B LINE L1 6869 6978 -80 5 889 457 236 74 0 chr9 39915434 39915602 -84160570 + L1MA7 LINE L1 5414 5595 -2190 5 889 243 0 0 0 chr9 39915611 39915638 -84160534 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 5 889 27 29 0 0 chr9 39915708 39915742 -84160430 + AT_rich Low_complexity Low_complexity 1 34 0 5 889 310 227 90 8 chr9 39915810 39915943 -84160229 + L1M2 LINE L1 4901 5044 -1099 5 889 9115 146 24 9 chr9 39916077 39917127 -84159045 + Lx4B LINE L1 4199 5262 -615 5 889 222 37 0 0 chr9 39917127 39917154 -84159018 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 5 889 9115 181 41 9 chr9 39917154 39918787 -84157385 + Lx4B LINE L1 5263 6972 -28 5 889 459 0 0 0 chr9 39918787 39918838 -84157334 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 889 274 234 0 0 chr9 39918840 39918904 -84157268 + L1MA7 LINE L1 6026 6089 -202 5 889 287 363 27 86 chr9 39918904 39919124 -84157048 - MER3 DNA MER1_type 0 209 3 5 889 386 275 60 31 chr9 39919369 39919553 -84156619 + MIRc SINE MIR 39 210 -52 5 889 245 339 8 118 chr9 39920040 39920167 -84156005 + PB1D10 SINE Alu 2 114 -3 5 889 409 84 56 0 chr9 39921342 39921413 -84154759 + L1_Mus2 LINE L1 6492 6566 0 5 889 252 0 0 0 chr9 39921428 39921456 -84154716 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 889 441 0 0 0 chr9 39921456 39921504 -84154668 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 889 225 286 16 0 chr9 39922128 39922191 -84153981 - tRNA-Ala-GCG tRNA tRNA -6 69 6 5 889 21 0 0 0 chr9 39922372 39922393 -84153779 + AT_rich Low_complexity Low_complexity 1 21 0 5 889 4154 166 46 24 chr9 39922491 39923338 -84152834 + Lx5 LINE L1 5683 6548 -502 5 889 254 159 81 68 chr9 39923335 39923409 -84152763 - Lx8 LINE L1 -373 7100 7026 5 889 1293 90 0 0 chr9 39923510 39923801 -84152371 + (GGGA)n Simple_repeat Simple_repeat 1 291 0 5 889 1543 252 20 15 chr9 39924760 39925167 -84151005 - Lx8 LINE L1 -437 7036 6628 5 889 1190 38 25 0 chr9 39925165 39925322 -84150850 - L1_Mus2 LINE L1 -395 6171 6011 5 889 1343 71 0 21 chr9 39925327 39925513 -84150659 - L1_Mus2 LINE L1 0 6566 6385 5 889 4190 63 14 33 chr9 39925511 39926085 -84150087 + L1_Mus2 LINE L1 6003 6565 -1 5 889 780 259 20 0 chr9 39926098 39926299 -84149873 - Lx8 LINE L1 -830 6643 6439 5 889 184 114 0 64 chr9 39926348 39926395 -84149777 + T-rich Low_complexity Low_complexity 3 46 0 5 889 33 25 0 0 chr9 39926417 39926457 -84149715 + AT_rich Low_complexity Low_complexity 1 40 0 5 889 1230 181 5 9 chr9 39926903 39927115 -84149057 - B3 SINE B2 -5 211 1 5 889 752 278 27 38 chr9 39927164 39927426 -84148746 - MER2 DNA MER2_type -2 343 85 5 889 24 0 0 0 chr9 39927940 39927964 -84148208 + AT_rich Low_complexity Low_complexity 1 24 0 5 889 582 281 183 30 chr9 39928275 39928766 -84147406 - L1MB4 LINE L1 -3271 3470 2905 5 889 1492 17 0 0 chr9 39928882 39929057 -84147115 + MTA_Mm LTR MaLR 1 175 -221 5 889 1603 105 0 12 chr9 39929075 39929317 -84146855 - L1Md_F2 LINE L1 -12 6570 6332 5 889 1543 64 0 0 chr9 39929318 39929520 -84146652 + L1_Mm LINE L1 5561 5762 -121 5 889 1901 58 4 0 chr9 39929520 39929762 -84146410 + MTA_Mm LTR MaLR 154 396 0 5 889 227 294 36 29 chr9 39929764 39929904 -84146268 - L1MB4 LINE L1 -3981 2768 2628 5 889 270 214 0 0 chr9 39929955 39930039 -84146133 + GA-rich Low_complexity Low_complexity 2 85 0 5 889 402 203 98 38 chr9 39930091 39930224 -84145948 - L1MB4 LINE L1 -5827 780 640 5 889 960 250 31 0 chr9 39930263 39930459 -84145713 + B3 SINE B2 9 210 -6 5 889 440 158 11 0 chr9 39930562 39930657 -84145515 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 889 233 254 16 48 chr9 39931030 39931092 -84145080 - ID4 SINE ID -23 60 1 5 889 432 268 10 0 chr9 39931496 39931593 -84144579 + PB1D10 SINE Alu 3 100 -17 5 889 420 20 0 0 chr9 39931619 39931668 -84144504 + (TTA)n Simple_repeat Simple_repeat 3 51 0 5 889 180 0 0 0 chr9 39931668 39931687 -84144485 + (TTC)n Simple_repeat Simple_repeat 1 20 0 5 889 4755 92 31 0 chr9 39931720 39932406 -84143766 + L1_Mus3 LINE L1 5931 6637 -1 5 889 795 174 0 0 chr9 39932427 39932576 -84143596 + GA-rich Low_complexity Low_complexity 3 151 0 5 889 227 216 131 20 chr9 39933264 39933363 -84142809 - Lx7 LINE L1 -9 7687 7578 5 889 185 0 40 0 chr9 39934285 39934310 -84141862 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 889 510 17 0 0 chr9 39935931 39935990 -84140182 + (CATA)n Simple_repeat Simple_repeat 2 60 0 5 889 436 48 0 14 chr9 39936210 39936290 -84139882 - L1Md_F3 LINE L1 -440 6127 6057 5 889 312 210 32 0 chr9 39937069 39937131 -84139041 + MER5A1 DNA MER1_type 1 64 -102 5 889 277 337 0 0 chr9 39937149 39937238 -84138934 - MER33 DNA MER1_type -225 99 11 5 889 276 77 0 0 chr9 39938699 39938738 -84137434 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 889 877 326 95 52 chr9 39938742 39940137 -84136035 - L1MA9 LINE L1 -376 5936 4446 5 889 734 111 8 0 chr9 39940137 39940217 -84135955 + (TC)n Simple_repeat Simple_repeat 1 81 0 5 889 706 22 11 11 chr9 39940217 39940310 -84135862 + (TTC)n Simple_repeat Simple_repeat 3 95 0 5 889 734 111 8 0 chr9 39940310 39940355 -84135817 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 889 7359 67 2 0 chr9 39940366 39941993 -84134179 - L1Md_F2 LINE L1 -1 6581 4954 5 889 449 218 0 0 chr9 39941990 39942091 -84134081 - L1VL1 LINE L1 -6321 101 1 5 889 245 268 107 103 chr9 39942127 39942305 -84133867 - L1MA9 LINE L1 -1698 4445 4266 5 889 1621 21 16 0 chr9 39942305 39942494 -84133678 - B2_Mm1a SINE B2 0 193 2 5 889 245 268 107 103 chr9 39942494 39942606 -84133566 - L1MA9 LINE L1 -1878 4265 4154 5 889 509 242 0 0 chr9 39942876 39942975 -84133197 - B3A SINE B2 -97 101 3 5 889 325 272 8 16 chr9 39943020 39943157 -84133015 - L1_Rod LINE L1 -3614 2233 2078 5 889 23 33 0 0 chr9 39943174 39943204 -84132968 + AT_rich Low_complexity Low_complexity 1 30 0 5 889 3138 39 3 64 chr9 39943552 39943941 -84132231 - RLTR10B2 LTR ERVK 0 365 1 5 889 1453 206 158 98 chr9 39945309 39945782 -84130390 - MT2A LTR ERVL -1 474 1 5 889 200 167 23 23 chr9 39945849 39945892 -84130280 + CT-rich Low_complexity Low_complexity 5 47 0 5 889 727 288 16 24 chr9 39945965 39946214 -84129958 - Lx7 LINE L1 -456 7240 6994 5 889 1267 220 63 148 chr9 39946188 39946694 -84129478 - L1_Mur3 LINE L1 -390 5490 5028 5 889 741 283 34 89 chr9 39947227 39947485 -84128687 + RLTR18 LTR ERVK 7 255 -361 5 889 1688 85 0 0 chr9 39947485 39947697 -84128475 - L1_Mus1 LINE L1 0 6567 6356 5 889 741 283 34 89 chr9 39947697 39947764 -84128408 + RLTR18 LTR ERVK 256 314 -302 5 889 742 261 34 19 chr9 39947809 39948016 -84128156 + RLTR18B LTR ERVK 192 401 -111 5 889 3884 169 2 11 chr9 39949284 39949895 -84126277 + Lx4B LINE L1 6447 7051 -7 6 889 578 223 116 0 chr9 39950021 39950142 -84126030 + B1_Mus2 SINE Alu 1 135 -12 6 889 626 68 0 11 chr9 39950146 39950235 -84125937 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 6 889 21 0 0 0 chr9 39950238 39950259 -84125913 + AT_rich Low_complexity Low_complexity 1 21 0 6 889 193 332 25 41 chr9 39950276 39950453 -84125719 + MIRb SINE MIR 78 251 -17 6 889 1428 286 78 32 chr9 39950804 39951277 -84124895 - Lx5 LINE L1 -18 7032 6538 6 889 3913 98 0 0 chr9 39951656 39952155 -84124017 - Lx LINE L1 0 6654 6156 6 889 858 156 240 0 chr9 39952254 39952433 -84123739 + URR1B DNA MER1_type 1 222 -3 6 889 1805 286 53 43 chr9 39952458 39953133 -84123039 - Lx9 LINE L1 -367 7277 6596 6 889 2040 144 0 97 chr9 39953166 39953250 -84122922 + Lx4B LINE L1 5482 5565 -312 6 889 5654 32 5 0 chr9 39953250 39953877 -84122295 + L1Md_T LINE L1 5951 6580 -2 6 889 3017 206 40 26 chr9 39953877 39954867 -84121305 + Lx4B LINE L1 5566 6997 -3 6 889 869 254 92 18 chr9 39954868 39955096 -84121076 - ORR1D-int LTR MaLR -1023 347 103 6 889 824 29 10 0 chr9 39955431 39955534 -84120638 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 889 280 60 60 0 chr9 39956277 39956327 -84119845 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 6 889 486 0 0 0 chr9 39956327 39956381 -84119791 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 6 889 821 167 22 7 chr9 39956415 39956554 -84119618 - B1_Mur4 SINE Alu -1 149 9 6 889 383 245 0 124 chr9 39956458 39956579 -84119593 - MT2B LTR ERVL -344 257 152 6 889 5446 42 29 2 chr9 39959879 39960506 -84115666 - L1Md_F2 LINE L1 -14 6568 5925 6 889 1320 20 0 0 chr9 39960507 39960659 -84115513 + L1_Mm LINE L1 5299 5450 -433 6 889 902 209 73 22 chr9 39960665 39960939 -84115233 + L1_Rod LINE L1 1403 1690 -4157 6 889 326 232 39 108 chr9 39960923 39961155 -84115017 + L1MA8 LINE L1 6072 6287 -4 6 889 194 0 39 0 chr9 39961202 39961228 -84114944 + (TAA)n Simple_repeat Simple_repeat 2 28 0 6 889 510 306 33 20 chr9 39961241 39961391 -84114781 + RSINE1 SINE B4 4 155 -10 6 889 300 350 90 14 chr9 39961403 39961548 -84114624 + HAL1-3A_ME LINE L1 2284 2439 -419 6 889 503 207 22 22 chr9 39961548 39961726 -84114446 + GA-rich Low_complexity Low_complexity 1 178 0 6 889 1488 95 5 0 chr9 39961753 39961943 -84114229 + B2_Mm1t SINE B2 1 191 -2 6 889 251 275 41 45 chr9 39963509 39963666 -84112506 - RMER2 LTR ERV1 -41 546 396 6 889 1667 181 70 111 chr9 39964477 39964668 -84111504 + RMER10B LTR ERVL 1 186 -212 6 889 324 0 0 0 chr9 39964668 39964704 -84111468 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 889 441 0 0 0 chr9 39964704 39964752 -84111420 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 889 1667 181 70 111 chr9 39964752 39964974 -84111198 + RMER10B LTR ERVL 187 397 -1 6 889 360 0 0 0 chr9 39965129 39965169 -84111003 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 889 1390 117 5 0 chr9 39965222 39965435 -84110737 - Lx LINE L1 -2 6652 6439 6 889 244 204 0 20 chr9 39965735 39965785 -84110387 + MER67D LTR ERV1 1 49 -465 6 889 202 159 45 60 chr9 39967094 39967161 -84109011 + L3 LINE CR1 949 1014 -3475 6 889 219 146 0 0 chr9 39967256 39967297 -84108875 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 6 889 768 77 0 0 chr9 39967298 39967402 -84108770 + (TTCTCC)n Simple_repeat Simple_repeat 4 107 0 6 889 284 0 28 0 chr9 39967756 39967792 -84108380 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 6 889 225 262 16 16 chr9 39967990 39968052 -84108120 - L1MEf LINE L1 -4946 1254 1193 6 889 477 223 6 48 chr9 39968123 39968288 -84107884 - Lx5 LINE L1 0 7050 6893 6 889 557 190 173 39 chr9 39968518 39968726 -84107446 - Lx9 LINE L1 0 7644 7409 6 889 22 0 0 0 chr9 39969218 39969240 -84106932 + AT_rich Low_complexity Low_complexity 1 22 0 6 889 653 318 87 67 chr9 39969387 39969731 -84106441 - RMER5 LTR ERV1 -57 477 127 6 889 1146 254 52 63 chr9 39969746 39969935 -84106237 + ORR1D2 LTR MaLR 10 186 -184 6 889 1324 193 9 9 chr9 39969935 39970160 -84106012 + URR1A DNA MER1_type 2 226 0 6 889 1146 254 52 63 chr9 39970160 39970335 -84105837 + ORR1D2 LTR MaLR 187 370 0 6 889 226 333 23 54 chr9 39970335 39970455 -84105717 - RMER5 LTR ERV1 -417 117 2 6 889 232 234 12 83 chr9 39970843 39970927 -84105245 + LTRIS_Mus LTR ERV1 465 542 -45 6 889 324 0 0 0 chr9 39971767 39971803 -84104369 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 889 366 23 0 0 chr9 39971803 39971845 -84104327 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 889 488 122 0 12 chr9 39972620 39972695 -84103477 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 6 889 1361 56 6 0 chr9 39972695 39972874 -84103298 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 889 488 122 0 12 chr9 39972874 39972881 -84103291 + (GGAA)n Simple_repeat Simple_repeat 2 8 0 6 889 309 82 0 0 chr9 39973233 39973282 -84102890 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 889 276 190 12 25 chr9 39973637 39973718 -84102454 + G-rich Low_complexity Low_complexity 2 81 0 6 889 186 43 0 0 chr9 39973992 39974015 -84102157 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 889 1720 216 77 3 chr9 39974590 39974980 -84101192 - MTD LTR MaLR 0 419 1 6 889 1581 138 21 108 chr9 39975127 39975452 -84100720 + ORR1B1 LTR MaLR 57 353 -41 6 889 33134 123 5 38 chr9 39975453 39976675 -84099497 + L1Md_F3 LINE L1 446 1444 -4439 6 111 8751 45 0 5 chr9 39976675 39977678 -84098494 + L1Md_F3 LINE L1 5587 6584 0 6 890 33134 56 3 52 chr9 39977678 39981865 -84094307 + L1Md_F3 LINE L1 1445 5585 -298 6 890 8781 40 2 5 chr9 39981866 39982867 -84093305 + L1Md_F3 LINE L1 5587 6584 0 6 890 318 70 0 0 chr9 39982867 39982910 -84093262 + ORR1B1 LTR MaLR 344 386 -8 6 890 903 350 75 39 chr9 39982914 39983378 -84092794 - Tigger7 DNA MER2_type -2001 490 10 6 890 672 280 122 0 chr9 39983467 39983656 -84092516 + B3 SINE B2 3 214 -2 6 890 592 284 44 49 chr9 39983682 39983886 -84092286 + B4A SINE B4 90 292 0 6 890 214 255 0 0 chr9 39983893 39983940 -84092232 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 890 260 308 59 17 chr9 39983978 39984097 -84092075 + MIR SINE MIR 19 142 -66 6 890 243 114 0 0 chr9 39985518 39985562 -84090610 + (T)n Simple_repeat Simple_repeat 1 44 0 6 890 649 342 53 42 chr9 39986662 39987019 -84089153 + MLT1A0 LTR MaLR 1 361 -4 6 890 1029 235 69 61 chr9 39987404 39987562 -84088610 - Lx7 LINE L1 -173 7523 7375 6 890 1302 79 0 0 chr9 39987562 39987726 -84088446 + L1_Mus1 LINE L1 6404 6567 0 6 890 1029 235 69 61 chr9 39987726 39987930 -84088242 - Lx7 LINE L1 -322 7374 7158 6 890 298 363 14 49 chr9 39989820 39989962 -84086210 - L2c LINE L2 -183 3204 3068 6 890 547 283 26 26 chr9 39990012 39990201 -84085971 - MER58A DNA MER1_type -2 222 34 6 890 278 204 10 30 chr9 39991477 39991578 -84084594 + T-rich Low_complexity Low_complexity 3 101 0 6 890 187 79 26 26 chr9 39992278 39992317 -84083855 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 890 226 130 18 36 chr9 39992442 39992624 -84083548 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 890 28 0 0 0 chr9 39992694 39992722 -84083450 + AT_rich Low_complexity Low_complexity 1 28 0 6 890 351 113 0 0 chr9 39993024 39993077 -84083095 + (T)n Simple_repeat Simple_repeat 1 53 0 6 890 1254 75 0 0 chr9 39993077 39993223 -84082949 - B1_Mm SINE Alu 0 147 2 6 890 560 14 14 0 chr9 39994005 39994074 -84082098 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 6 890 261 83 0 0 chr9 39994203 39994239 -84081933 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 890 1047 94 0 0 chr9 39994239 39994388 -84081784 + (GGAA)n Simple_repeat Simple_repeat 4 152 0 6 890 305 324 0 0 chr9 39994402 39994476 -84081696 + ID4 SINE ID 3 76 -7 6 890 318 106 0 0 chr9 39994482 39994529 -84081643 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 6 890 225 0 0 0 chr9 39997098 39997123 -84079049 + (A)n Simple_repeat Simple_repeat 1 25 0 6 890 6168 36 0 0 chr9 39997208 39997896 -84078276 + L1Md_T LINE L1 5895 6582 0 6 890 632 306 166 48 chr9 39997992 39998384 -84077788 + MLT2B2 LTR ERVL 18 455 -60 6 890 192 111 0 0 chr9 39998477 39998513 -84077659 + (A)n Simple_repeat Simple_repeat 1 36 0 6 890 333 0 0 0 chr9 39998709 39998746 -84077426 + (A)n Simple_repeat Simple_repeat 1 37 0 6 890 288 154 0 0 chr9 39998747 39998799 -84077373 + GA-rich Low_complexity Low_complexity 2 53 0 6 890 23 0 0 0 chr9 40000104 40000127 -84076045 + GC_rich Low_complexity Low_complexity 1 23 0 1 890 703 190 14 21 chr9 40001774 40001919 -84074253 - B1_Mur4 SINE Alu -2 148 5 2 890 291 189 35 5 chr9 40003611 40003683 -84072489 + ID4 SINE ID 6 78 -74 3 890 342 328 30 0 chr9 40004160 40004294 -84071878 - MIRb SINE MIR -18 250 113 4 890 690 260 97 103 chr9 40004991 40005321 -84070851 - RMER15-int LTR ERVL 0 4999 4672 5 890 8161 56 1 3 chr9 40005335 40006641 -84069531 - L1_Mus2 LINE L1 0 6566 5278 6 890 1133 227 60 60 chr9 40006783 40007102 -84069070 - RMER15-int LTR ERVL -506 4493 4175 5 890 1985 322 74 46 chr9 40007099 40007587 -84068585 - RMER15-int LTR ERVL -3890 1109 609 5 890 216 67 0 0 chr9 40007587 40007617 -84068555 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 7 890 1985 322 74 46 chr9 40007617 40008194 -84067978 - RMER15-int LTR ERVL -4391 608 14 5 890 348 295 62 41 chr9 40008329 40008474 -84067698 - RMER15 LTR ERVL -155 420 273 5 890 347 200 339 8 chr9 40010706 40010827 -84065345 + B3A SINE B2 1 161 -37 8 890 1308 14 0 0 chr9 40010933 40011079 -84065093 + B1_Mus2 SINE Alu 2 147 0 9 890 1076 43 0 0 chr9 40011170 40011308 -84064864 - B1_Mus1 SINE Alu 0 148 11 1 890 234 0 0 0 chr9 40011340 40011366 -84064806 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 890 603 257 69 7 chr9 40011459 40011604 -84064568 + RSINE1 SINE B4 8 161 -4 1 890 337 279 29 0 chr9 40012713 40012817 -84063355 + RMER15 LTR ERVL 406 512 -63 1 890 258 284 105 26 chr9 40013158 40013234 -84062938 - Charlie12 DNA MER1_type -2777 96 15 1 890 1417 67 0 11 chr9 40020943 40021124 -84055048 + B2_Mm2 SINE B2 2 180 -15 1 890 2303 274 94 17 chr9 40022646 40023408 -84052764 - Lx8 LINE L1 -200 7273 6453 1 890 255 257 57 0 chr9 40023387 40023457 -84052715 - Lx7 LINE L1 -1103 6541 6468 1 890 1116 202 9 14 chr9 40023514 40023730 -84052442 + B3 SINE B2 1 215 -1 1 890 655 271 91 48 chr9 40023990 40024346 -84051826 - Lx7 LINE L1 -1674 5970 5590 1 890 276 296 0 12 chr9 40024345 40024427 -84051745 - L1M1 LINE L1 -766 5534 5454 1 890 661 276 12 6 chr9 40024427 40024591 -84051581 - B3A SINE B2 -33 165 1 2 890 2591 270 142 27 chr9 40024593 40026005 -84050167 - Lx7 LINE L1 -474 5406 3833 1 890 730 122 33 20 chr9 40026045 40026196 -84049976 - RMER17B LTR ERVK -494 464 312 2 890 1238 307 107 31 chr9 40026342 40026914 -84049258 - Lx8 LINE L1 -10 7463 6849 2 890 354 61 0 0 chr9 40026914 40026963 -84049209 + (GGA)n Simple_repeat Simple_repeat 3 51 0 2 890 255 260 19 40 chr9 40027057 40027176 -84048996 + L1_Rod LINE L1 4697 4803 -1044 2 890 498 281 47 38 chr9 40027225 40027436 -84048736 + L1M2 LINE L1 4884 5096 -1047 2 890 437 247 22 25 chr9 40027507 40027665 -84048507 - Lx8 LINE L1 -1514 5959 5801 2 890 664 221 0 0 chr9 40027695 40027817 -84048355 + RSINE1 SINE B4 3 124 -41 2 890 258 56 0 0 chr9 40027963 40027999 -84048173 + (A)n Simple_repeat Simple_repeat 1 36 0 2 890 594 50 0 0 chr9 40028004 40028084 -84048088 + B1_Mm SINE Alu 68 147 0 2 890 309 307 164 20 chr9 40028526 40028819 -84047353 - L1MEg LINE L1 -4202 1882 1548 2 890 339 314 130 23 chr9 40028907 40029253 -84046919 - L1M5 LINE L1 -3019 3127 2745 3 890 285 298 39 31 chr9 40029287 40029301 -84046871 - ID_B1 SINE B4 -1 223 95 3 890 436 274 0 9 chr9 40029301 40029415 -84046757 - B1F SINE Alu -23 126 14 3 890 262 354 10 7 chr9 40029682 40029854 -84046318 + L1_Mur1 LINE L1 1595 1768 -2146 3 890 230 278 68 17 chr9 40030095 40030212 -84045960 - L1_Rod LINE L1 -365 5482 5360 3 890 322 194 123 75 chr9 40030237 40030343 -84045829 - B4A SINE B4 -180 112 2 3 890 360 0 0 0 chr9 40030456 40030496 -84045676 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 890 1165 42 0 27 chr9 40030496 40030644 -84045528 - B1_Mm SINE Alu -3 144 1 3 890 223 204 19 0 chr9 40031161 40031215 -84044957 + A-rich Low_complexity Low_complexity 4 58 0 3 890 1433 233 37 32 chr9 40031382 40031759 -84044413 + Lx9 LINE L1 7099 7477 -167 3 890 216 96 77 0 chr9 40032464 40032516 -84043656 + CT-rich Low_complexity Low_complexity 3 58 0 4 890 528 266 43 80 chr9 40033387 40033575 -84042597 + B3A SINE B2 2 182 -16 4 890 290 231 45 27 chr9 40033902 40034013 -84042159 + RLTR23 LTR ERV1 286 398 -32 4 890 382 248 199 28 chr9 40034698 40034839 -84041333 + RMER15 LTR ERVL 411 575 0 4 890 565 242 30 0 chr9 40035380 40035512 -84040660 + B1F SINE Alu 6 141 -8 4 890 213 39 0 0 chr9 40035512 40035538 -84040634 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 890 265 127 63 0 chr9 40035535 40035598 -84040574 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 4 890 1146 44 0 0 chr9 40035620 40035757 -84040415 + B1_Mus1 SINE Alu 2 138 -10 4 890 351 0 0 0 chr9 40035757 40035796 -84040376 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 890 253 232 0 67 chr9 40036470 40036530 -84039642 - PB1D10 SINE Alu -17 100 45 4 890 290 335 72 0 chr9 40037269 40037436 -84038736 - MLT1D LTR MaLR -17 488 310 5 890 194 344 85 20 chr9 40038108 40038307 -84037865 + L2a LINE L2 2964 3175 -251 5 890 1090 78 0 0 chr9 40038313 40038455 -84037717 + B1_Mus1 SINE Alu 2 143 -5 5 890 258 32 0 0 chr9 40038455 40038486 -84037686 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 890 210 143 0 0 chr9 40038637 40038672 -84037500 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 5 890 410 192 30 20 chr9 40039266 40039367 -84036805 - MTEb LTR MaLR 0 379 278 5 890 238 288 154 29 chr9 40039438 40039574 -84036598 - MTEb LTR MaLR -143 216 64 5 890 184 280 16 6 chr9 40039737 40039807 -84036365 + MIRc SINE MIR 108 179 -29 5 890 294 265 0 0 chr9 40039856 40039924 -84036248 + ID4_ SINE ID 12 79 -4 5 890 915 240 179 45 chr9 40040024 40040463 -84035709 - RMER4B LTR ERVK -23 588 1 5 890 271 349 28 0 chr9 40040620 40040726 -84035446 - MIRc SINE MIR -122 146 38 5 890 1081 103 35 0 chr9 40041051 40041225 -84034947 + B2_Mm2 SINE B2 2 181 -14 6 890 180 340 169 34 chr9 40041299 40041506 -84034666 - MIR SINE MIR 0 262 28 6 890 398 336 80 33 chr9 40043075 40043242 -84032930 - MLT1A0 LTR MaLR -20 345 178 6 890 531 78 0 0 chr9 40043242 40043319 -84032853 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 890 398 336 80 33 chr9 40043319 40043450 -84032722 - MLT1A0 LTR MaLR -188 177 33 6 890 1385 98 0 20 chr9 40043967 40044164 -84032008 - B2_Mm2 SINE B2 -1 194 2 6 890 1179 99 0 0 chr9 40044450 40044662 -84031510 + (GAAA)n Simple_repeat Simple_repeat 1 212 0 6 890 183 80 0 0 chr9 40045068 40045093 -84031079 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 890 885 245 171 25 chr9 40045283 40045639 -84030533 + MLT1A1 LTR MaLR 1 408 0 6 890 3095 187 36 136 chr9 40046103 40046423 -84029749 + Lx2 LINE L1 5166 5378 -765 6 890 538 71 12 12 chr9 40046423 40046508 -84029664 + B2_Mm2 SINE B2 102 186 -9 6 890 3095 187 36 136 chr9 40046508 40046530 -84029642 + Lx2 LINE L1 5379 5394 -749 6 890 952 118 21 7 chr9 40046530 40046675 -84029497 + B1_Mus1 SINE Alu 2 148 0 7 890 3095 154 15 187 chr9 40046675 40046978 -84029194 + Lx2 LINE L1 5370 5649 -234 6 890 1593 52 0 0 chr9 40046978 40047169 -84029003 + B2_Mm1a SINE B2 2 192 -1 7 890 3095 154 15 187 chr9 40047169 40047407 -84028765 + Lx2 LINE L1 5650 5883 0 6 890 1362 194 32 68 chr9 40047412 40047834 -84028338 + RMER16 LTR ERVK 1 533 0 7 890 2573 139 78 9 chr9 40047834 40048283 -84027889 + Lx2 LINE L1 5884 6363 -634 6 890 225 226 0 0 chr9 40048313 40048366 -84027806 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 890 444 241 78 52 chr9 40048612 40048765 -84027407 - RSINE1 SINE B4 -1 164 8 7 890 1254 34 0 0 chr9 40050324 40050470 -84025702 + B1_Mus2 SINE Alu 2 147 0 7 890 414 0 0 0 chr9 40050532 40050578 -84025594 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 7 890 412 267 20 0 chr9 40050905 40051006 -84025166 - PB1D10 SINE Alu -11 106 4 7 890 227 315 87 0 chr9 40051008 40051100 -84025072 + L2b LINE L2 3270 3369 -6 7 890 239 273 25 38 chr9 40051521 40051601 -84024571 + CT-rich Low_complexity Low_complexity 2 80 0 7 890 642 156 92 15 chr9 40051837 40051967 -84024205 + MTD LTR MaLR 1 140 -279 8 890 392 287 10 0 chr9 40052320 40052421 -84023751 + Lx9 LINE L1 7316 7417 -227 8 890 323 60 20 0 chr9 40052421 40052471 -84023701 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 890 232 356 27 0 chr9 40052636 40052709 -84023463 + ID4_ SINE ID 2 76 -7 8 890 542 320 56 24 chr9 40053200 40053450 -84022722 - MLT2E LTR ERVL -344 284 27 8 890 290 250 131 36 chr9 40054722 40054859 -84021313 - LTR16C LTR ERVL -110 379 230 8 890 497 275 126 34 chr9 40054957 40055164 -84021008 + B4 SINE B4 1 226 -66 8 890 1166 50 0 0 chr9 40055165 40055304 -84020868 + B1_Mus1 SINE Alu 1 139 -9 8 890 387 0 0 0 chr9 40055323 40055366 -84020806 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 8 890 21 0 0 0 chr9 40055452 40055473 -84020699 + AT_rich Low_complexity Low_complexity 1 21 0 8 890 1853 141 87 8 chr9 40055495 40055853 -84020319 - ORR1B1 LTR MaLR -8 386 1 9 890 338 195 46 0 chr9 40055854 40055941 -84020231 + MTEb LTR MaLR 287 377 -2 9 890 204 200 0 0 chr9 40057071 40057116 -84019056 + GA-rich Low_complexity Low_complexity 4 48 0 9 890 626 68 23 0 chr9 40057177 40057265 -84018907 + ORR1B2 LTR MaLR 277 366 -1 9 890 280 160 80 0 chr9 40057266 40057341 -84018831 + Lx9 LINE L1 7564 7644 0 9 890 529 231 98 8 chr9 40057368 40057490 -84018682 + B4A SINE B4 152 284 -8 9 890 347 254 35 26 chr9 40057629 40057742 -84018430 - B4A SINE B4 -55 237 124 9 890 400 139 12 12 chr9 40057746 40057826 -84018346 + C-rich Low_complexity Low_complexity 4 83 0 9 890 597 248 36 7 chr9 40057826 40057964 -84018208 - B4A SINE B4 -149 143 2 9 890 450 0 0 0 chr9 40058182 40058232 -84017940 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 890 273 57 0 0 chr9 40058232 40058267 -84017905 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 890 1287 84 0 0 chr9 40058267 40058445 -84017727 + (TA)n Simple_repeat Simple_repeat 1 178 0 1 890 312 27 0 0 chr9 40058629 40058666 -84017506 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 890 3555 106 121 0 chr9 40058668 40059187 -84016985 + MT2B2 LTR ERVL 3 584 0 1 890 1142 246 48 31 chr9 40061138 40061431 -84014741 - MTE2b LTR MaLR 0 379 82 1 890 748 280 118 42 chr9 40061460 40061766 -84014406 + Lx9 LINE L1 6959 7287 -357 1 890 37032 55 7 8 chr9 40061768 40067260 -84008912 + L1Md_T LINE L1 102 5586 -297 1 890 8165 56 0 0 chr9 40067260 40068256 -84007916 + L1Md_T LINE L1 5587 6582 0 1 890 563 268 61 11 chr9 40068265 40068446 -84007726 + Lx9 LINE L1 7280 7469 -175 1 890 594 0 0 0 chr9 40068446 40068512 -84007660 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 890 329 220 104 14 chr9 40068586 40068702 -84007470 - MTE2b LTR MaLR -292 127 11 1 890 391 282 164 19 chr9 40068712 40068871 -84007301 + B3A SINE B2 1 182 -16 1 890 325 316 17 17 chr9 40069117 40069236 -84006936 - MIR SINE MIR -58 204 86 1 890 505 331 41 24 chr9 40069334 40069504 -84006668 - MTEa LTR MaLR -2 377 205 1 890 540 0 0 0 chr9 40069530 40069590 -84006582 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 890 1613 246 104 38 chr9 40069832 40069934 -84006238 - Lx8 LINE L1 -204 7269 7176 1 890 416 18 0 35 chr9 40069944 40070002 -84006170 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 890 1094 97 0 20 chr9 40070002 40070139 -84006033 - B1_Mus2 SINE Alu -10 137 1 1 890 1613 246 104 38 chr9 40070139 40070535 -84005637 - Lx8 LINE L1 -298 7175 6738 1 890 429 307 17 9 chr9 40070562 40070677 -84005495 - B4A SINE B4 -69 223 108 1 890 459 0 0 0 chr9 40072915 40072966 -84003206 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 890 582 271 23 0 chr9 40072969 40073102 -84003070 - RSINE1 SINE B4 -20 145 10 1 890 732 274 55 10 chr9 40073109 40073308 -84002864 + MER2 DNA MER2_type 111 318 -27 1 890 768 258 135 65 chr9 40073390 40073730 -84002442 - MTEa LTR MaLR -14 365 2 1 890 1100 211 9 14 chr9 40073870 40074081 -84002091 + B3 SINE B2 2 211 -5 1 890 1543 103 4 8 chr9 40074222 40074467 -84001705 - Lx LINE L1 0 6654 6411 1 890 411 305 112 22 chr9 40074572 40074706 -84001466 + RSINE1 SINE B4 1 146 -19 1 890 297 125 0 0 chr9 40074715 40074771 -84001401 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 890 211 183 32 32 chr9 40078263 40078325 -83997847 + T-rich Low_complexity Low_complexity 5 66 0 1 890 423 0 0 0 chr9 40078593 40078640 -83997532 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 890 564 272 41 82 chr9 40080888 40081084 -83995088 - B3A SINE B2 -7 191 4 1 890 575 296 30 0 chr9 40081143 40081275 -83994897 - RSINE1 SINE B4 -29 136 1 1 890 320 296 140 78 chr9 40081279 40081587 -83994585 + L2a LINE L2 2727 3053 -366 1 890 412 241 7 7 chr9 40081637 40081775 -83994397 + CT-rich Low_complexity Low_complexity 1 138 0 1 890 205 128 43 0 chr9 40081832 40081879 -83994293 + C-rich Low_complexity Low_complexity 2 50 0 1 890 296 277 149 30 chr9 40081889 40082023 -83994149 + L2a LINE L2 3276 3425 -1 1 890 287 253 93 112 chr9 40082924 40083129 -83993043 + YREP_Mm Unknown Unknown 129 329 -1483 1 890 826 274 88 0 chr9 40082981 40083185 -83992987 - ID_B1 SINE B4 -1 223 2 1 890 266 259 0 17 chr9 40083213 40083272 -83992900 - PB1D7 SINE Alu -7 113 56 1 890 471 266 35 0 chr9 40083283 40083396 -83992776 + PB1D10 SINE Alu 1 117 0 1 890 261 360 52 32 chr9 40083613 40083768 -83992404 - L3 LINE CR1 -496 3993 3836 1 890 254 274 12 23 chr9 40085369 40085455 -83990717 - MamRep38 DNA hAT -149 146 62 1 890 453 335 38 14 chr9 40085540 40085752 -83990420 + MIR SINE MIR 25 241 -21 1 890 244 239 87 29 chr9 40086338 40086407 -83989765 + MIRc SINE MIR 3 75 -193 1 890 474 279 45 7 chr9 40087624 40087779 -83988393 - RSINE1 SINE B4 -2 163 3 1 890 930 228 21 11 chr9 40089759 40089950 -83986222 + B2_Mm2 SINE B2 3 195 0 1 890 190 313 13 118 chr9 40090321 40090334 -83985838 - MIR SINE MIR -185 77 67 1 890 1368 208 137 52 chr9 40090334 40090720 -83985452 - MTD LTR MaLR 0 419 1 1 890 190 313 13 118 chr9 40090720 40090782 -83985390 - MIR SINE MIR -196 66 10 1 890 210 332 81 35 chr9 40090807 40090952 -83985220 - MIR SINE MIR -91 177 18 1 890 180 0 0 0 chr9 40091492 40091512 -83984660 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 1 890 3224 36 10 5 chr9 40091687 40092075 -83984097 - RLTR10 LTR ERVK 0 390 1 1 890 669 178 13 6 chr9 40092470 40092628 -83983544 + GA-rich Low_complexity Low_complexity 2 160 0 1 890 1139 117 0 6 chr9 40092628 40092809 -83983363 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 890 402 366 57 0 chr9 40093170 40093345 -83982827 + Tigger5 DNA MER2_type 6 190 -2216 1 890 275 250 28 37 chr9 40093539 40093647 -83982525 + L1_Mur3 LINE L1 4009 4115 -1765 1 890 1196 268 69 25 chr9 40093668 40093986 -83982186 - MTE2a LTR MaLR -8 371 40 1 890 1043 205 0 64 chr9 40094405 40094568 -83981604 + B3 SINE B2 2 164 -52 1 890 432 0 0 0 chr9 40094568 40094616 -83981556 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 890 1043 205 0 64 chr9 40094616 40094671 -83981501 + B3 SINE B2 165 206 -10 1 890 420 341 112 31 chr9 40094721 40094981 -83981191 + L1M5 LINE L1 4413 4693 -1453 1 890 296 293 24 16 chr9 40095628 40095753 -83980419 + L1M5 LINE L1 5349 5474 -720 1 890 209 209 98 0 chr9 40097069 40097123 -83979049 - MIRm SINE MIR -95 173 115 1 890 180 111 0 0 chr9 40097476 40097503 -83978669 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 1 890 1192 222 10 96 chr9 40098456 40098770 -83977402 + B4 SINE B4 2 288 -4 1 890 207 0 0 0 chr9 40098840 40098863 -83977309 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 890 236 28 56 0 chr9 40098863 40098899 -83977273 + (CAGAGA)n Simple_repeat Simple_repeat 6 43 0 1 890 201 262 0 0 chr9 40099090 40099132 -83977040 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 890 750 159 55 8 chr9 40099622 40099749 -83976423 - B1_Mus2 SINE Alu -10 137 5 1 890 778 247 26 46 chr9 40099787 40099982 -83976190 + B3A SINE B2 3 193 -5 1 890 763 298 188 3 chr9 40100138 40100431 -83975741 + Lx8 LINE L1 6958 7304 -169 1 890 234 191 0 0 chr9 40100576 40100623 -83975549 + A-rich Low_complexity Low_complexity 1 47 0 1 890 217 315 110 22 chr9 40102795 40102886 -83973286 - MIRc SINE MIR -141 127 29 1 890 217 100 40 0 chr9 40105468 40105518 -83970654 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 890 288 0 0 0 chr9 40106758 40106790 -83969382 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 890 395 182 184 39 chr9 40106790 40106883 -83969289 - RSINE1 SINE B4 -41 124 15 1 891 279 0 0 0 chr9 40108151 40108182 -83967990 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 891 200 287 87 87 chr9 40110763 40110889 -83965283 + L2b LINE L2 3228 3353 -22 1 891 214 288 0 40 chr9 40115328 40115404 -83960768 + GA-rich Low_complexity Low_complexity 1 73 0 1 891 2523 56 9 12 chr9 40116095 40116420 -83959752 + L1Md_F2 LINE L1 6259 6582 0 1 891 718 324 191 24 chr9 40118346 40119182 -83956990 + L2 LINE L2 1983 2958 -461 1 891 401 314 75 91 chr9 40121111 40121296 -83954876 + MER74A LTR ERVL 271 463 -159 1 891 2067 209 94 16 chr9 40121296 40121786 -83954386 + RLTR11A LTR ERVK 1 528 0 1 891 401 302 57 81 chr9 40121786 40121895 -83954277 + MER74A LTR ERVL 406 503 -55 1 891 195 69 0 0 chr9 40122180 40122209 -83953963 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 1 891 243 0 0 0 chr9 40122378 40122405 -83953767 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 891 249 302 41 10 chr9 40122436 40122533 -83953639 - Lx7 LINE L1 -449 7247 7148 1 891 227 301 64 105 chr9 40122537 40122708 -83953464 - IAPLTR2a LTR ERVK -64 347 184 1 891 188 213 30 76 chr9 40123497 40123563 -83952609 - MIR3 SINE MIR -27 181 119 1 891 268 256 21 85 chr9 40123644 40123738 -83952434 - MIR3 SINE MIR -3 205 118 1 891 251 85 0 21 chr9 40123878 40123926 -83952246 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 891 216 0 0 0 chr9 40123929 40123953 -83952219 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1 891 649 101 0 0 chr9 40124089 40124178 -83951994 + B1_Mus2 SINE Alu 46 134 -13 1 891 403 224 0 34 chr9 40124308 40124396 -83951776 - BC1_Mm scRNA scRNA -53 99 15 1 891 259 289 13 38 chr9 40124325 40124404 -83951768 - ID SINE ID -141 83 7 1 891 221 219 60 2 chr9 40125762 40125838 -83950334 - MIR SINE MIR -137 139 61 1 891 813 206 31 19 chr9 40126061 40126241 -83949931 + B3 SINE B2 1 188 -7 1 891 230 265 56 64 chr9 40126264 40126389 -83949783 + RLTR25B LTR ERVK 389 512 -516 1 891 410 163 8 0 chr9 40126320 40126395 -83949777 + B1_Mur3 SINE Alu 45 124 -25 1 891 396 0 0 0 chr9 40126473 40126517 -83949655 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 891 193 300 71 0 chr9 40127301 40127371 -83948801 - MIRb SINE MIR -98 170 96 1 891 270 0 0 0 chr9 40128922 40128952 -83947220 + (A)n Simple_repeat Simple_repeat 1 30 0 1 891 908 163 253 0 chr9 40129668 40129846 -83946326 + URR1A DNA MER1_type 3 225 -1 1 891 192 40 0 0 chr9 40130860 40130885 -83945287 + (CAGGG)n Simple_repeat Simple_repeat 2 26 0 1 891 219 69 0 0 chr9 40133668 40133697 -83942475 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 1 891 250 154 28 97 chr9 40133786 40133858 -83942314 - MER34A LTR ERV1 -452 119 53 1 891 423 0 0 0 chr9 40134914 40134961 -83941211 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 891 992 128 75 43 chr9 40137015 40137203 -83938969 - B2_Mm2 SINE B2 -1 194 1 1 891 1516 68 5 0 chr9 40137651 40137842 -83938330 + B2_Mm1t SINE B2 2 193 0 1 891 210 71 0 0 chr9 40138223 40138251 -83937921 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 891 561 264 0 16 chr9 40141709 40141836 -83934336 - RSINE1 SINE B4 0 165 41 1 891 751 219 0 114 chr9 40142641 40142816 -83933356 - RSINE1 SINE B4 0 165 11 2 891 288 265 22 0 chr9 40143761 40143897 -83932275 + GA-rich Low_complexity Low_complexity 2 140 0 2 891 213 94 0 0 chr9 40143960 40143992 -83932180 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 891 874 312 93 12 chr9 40146482 40146741 -83929431 + B4A SINE B4 9 288 -4 2 891 356 0 23 0 chr9 40148776 40148820 -83927352 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 891 581 276 31 25 chr9 40149266 40149426 -83926746 + B4 SINE B4 122 282 -10 2 891 790 304 8 34 chr9 40150148 40150414 -83925758 + B4A SINE B4 33 291 -1 2 891 736 210 58 0 chr9 40150602 40150740 -83925432 - B1_Mur2 SINE Alu -1 148 3 2 891 240 257 56 28 chr9 40150958 40151030 -83925142 - ID4_ SINE ID -4 79 6 2 891 438 20 0 0 chr9 40153417 40153468 -83922704 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 891 342 115 0 0 chr9 40153818 40153870 -83922302 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 891 315 0 0 0 chr9 40153954 40153989 -83922183 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 891 414 0 0 0 chr9 40153989 40154034 -83922138 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 891 214 294 61 44 chr9 40154673 40154787 -83921385 - MIRb SINE MIR -48 220 105 2 891 933 299 81 24 chr9 40154801 40155134 -83921038 + ORR1E LTR MaLR 2 353 -6 2 891 234 281 65 43 chr9 40155201 40155294 -83920878 - MTEa LTR MaLR -7 372 278 2 891 187 274 56 96 chr9 40156221 40156346 -83919826 + MIRc SINE MIR 27 146 -122 2 891 180 308 15 15 chr9 40157124 40157190 -83918982 - MIRb SINE MIR -67 201 136 2 891 261 57 0 0 chr9 40157618 40157653 -83918519 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 891 22 0 0 0 chr9 40157929 40157951 -83918221 + AT_rich Low_complexity Low_complexity 1 22 0 2 891 571 273 13 20 chr9 40158308 40158461 -83917711 + LTR41 LTR ERVL 1 152 -616 2 891 302 179 29 15 chr9 40158702 40158770 -83917402 + LTR41 LTR ERVL 688 756 -12 2 891 420 71 0 0 chr9 40158787 40158843 -83917329 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 891 255 368 60 40 chr9 40159018 40159168 -83917004 + MER5B DNA MER1_type 26 178 0 2 891 396 91 0 0 chr9 40159784 40159850 -83916322 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 891 198 0 0 0 chr9 40160186 40160208 -83915964 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 891 863 109 86 0 chr9 40160212 40160340 -83915832 - B1_Mur4 SINE Alu -6 144 6 2 891 276 371 42 58 chr9 40160885 40161074 -83915098 + LTR16A LTR ERVL 242 427 -24 2 891 1034 83 30 0 chr9 40162545 40162678 -83913494 + B1_Mus1 SINE Alu 1 137 -11 2 891 270 0 0 0 chr9 40162678 40162708 -83913464 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 891 222 319 22 32 chr9 40165283 40165427 -83910745 - MIR SINE MIR -52 156 12 2 891 856 151 70 28 chr9 40165446 40165589 -83910583 + B1_Mur4 SINE Alu 1 149 -1 2 891 441 158 0 0 chr9 40165594 40165676 -83910496 + GA-rich Low_complexity Low_complexity 3 84 0 2 891 215 296 19 0 chr9 40165796 40165850 -83910322 + MER5A DNA MER1_type 102 156 -33 2 891 435 322 26 33 chr9 40167134 40167285 -83908887 - MER58A DNA MER1_type 0 224 75 2 891 244 274 58 10 chr9 40167497 40167600 -83908572 - PB1D10 SINE Alu -9 108 1 2 891 362 74 0 18 chr9 40167671 40167726 -83908446 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 2 891 359 333 9 0 chr9 40168997 40169105 -83907067 + ID_B1 SINE B4 69 177 -47 2 891 315 203 0 0 chr9 40169174 40169243 -83906929 + CT-rich Low_complexity Low_complexity 2 70 0 2 891 282 56 0 0 chr9 40169245 40169281 -83906891 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 891 225 278 160 33 chr9 40169572 40169784 -83906388 + L1M5 LINE L1 5254 5492 -632 2 891 292 235 141 17 chr9 40170013 40170107 -83906065 + B1F SINE Alu 4 99 -50 2 891 913 257 62 59 chr9 40170142 40170415 -83905757 + B4A SINE B4 8 281 -11 2 891 216 0 0 0 chr9 40170422 40170446 -83905726 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 891 378 0 0 0 chr9 40170447 40170489 -83905683 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 891 241 47 23 23 chr9 40170756 40170800 -83905372 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 891 357 284 144 23 chr9 40171170 40171433 -83904739 + L1MB7 LINE L1 5889 6183 -1 2 891 250 230 12 119 chr9 40171505 40171589 -83904583 + ID4 SINE ID 2 76 -7 2 891 257 250 14 42 chr9 40171519 40171590 -83904582 + tRNA-Ala-GCY_ tRNA tRNA 3 71 -4 2 891 396 0 0 0 chr9 40171616 40171660 -83904512 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 891 288 330 44 18 chr9 40171798 40171912 -83904260 + PB1D10 SINE Alu 1 117 0 2 891 652 191 87 0 chr9 40173535 40173661 -83902511 + B1_Mm SINE Alu 9 145 -2 2 891 273 146 0 0 chr9 40173664 40173712 -83902460 + (TAA)n Simple_repeat Simple_repeat 1 48 0 2 891 189 356 91 25 chr9 40173723 40173844 -83902328 - MIRc SINE MIR -74 194 66 2 891 324 0 0 0 chr9 40174213 40174249 -83901923 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 891 435 295 54 0 chr9 40174250 40174362 -83901810 - RSINE1 SINE B4 -20 145 28 2 891 339 24 0 0 chr9 40174362 40174383 -83901789 + (T)n Simple_repeat Simple_repeat 1 21 0 2 891 1209 54 0 0 chr9 40174383 40174530 -83901642 - B1_Mus2 SINE Alu 0 147 1 2 891 339 24 0 0 chr9 40174530 40174550 -83901622 + (T)n Simple_repeat Simple_repeat 1 20 0 2 891 378 0 0 0 chr9 40174944 40174986 -83901186 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 891 328 189 8 16 chr9 40175022 40175146 -83901026 + (TCTCTG)n Simple_repeat Simple_repeat 4 126 0 2 891 279 0 0 0 chr9 40175146 40175177 -83900995 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 891 243 0 0 0 chr9 40175325 40175352 -83900820 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 891 269 266 47 71 chr9 40175796 40175881 -83900291 + PB1D10 SINE Alu 34 116 -33 2 891 933 124 0 0 chr9 40175895 40176024 -83900148 + B1_Mur4 SINE Alu 1 129 -21 2 891 250 295 38 83 chr9 40176530 40176557 -83899615 + MT2B2 LTR ERVL 134 154 -430 2 891 471 218 12 15 chr9 40176557 40176699 -83899473 + PB1D10 SINE Alu 1 144 -3 2 891 27 29 0 0 chr9 40176808 40176842 -83899330 + AT_rich Low_complexity Low_complexity 1 34 0 2 891 27 0 0 0 chr9 40177386 40177413 -83898759 + AT_rich Low_complexity Low_complexity 1 27 0 2 891 487 259 124 24 chr9 40177432 40177681 -83898491 + B4A SINE B4 1 274 -18 2 891 333 0 0 0 chr9 40177720 40177757 -83898415 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 891 208 121 0 0 chr9 40177782 40177815 -83898357 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 2 891 342 246 87 39 chr9 40177817 40177944 -83898228 + RSINE1 SINE B4 4 136 -29 2 891 432 0 0 0 chr9 40178150 40178198 -83897974 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 891 387 0 0 0 chr9 40178198 40178240 -83897932 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 891 295 128 0 60 chr9 40179316 40179366 -83896806 - RMER10A LTR ERVL -395 47 1 2 891 315 0 0 0 chr9 40179448 40179483 -83896689 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 891 414 0 0 0 chr9 40180033 40180079 -83896093 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 891 760 271 63 39 chr9 40180567 40180851 -83895321 + B4A SINE B4 2 292 0 2 891 379 264 171 14 chr9 40181204 40181350 -83894822 + MIR SINE MIR 86 254 -8 2 891 247 176 39 19 chr9 40181852 40181904 -83894268 + RMER6A LTR ERVK 181 233 -523 2 891 522 0 0 0 chr9 40182565 40182623 -83893549 + (TCC)n Simple_repeat Simple_repeat 1 58 0 2 891 237 65 0 0 chr9 40183648 40183679 -83892493 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 891 379 318 129 62 chr9 40185958 40186223 -83889949 + B4A SINE B4 2 284 -8 2 891 414 0 0 0 chr9 40186381 40186427 -83889745 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 891 375 23 0 0 chr9 40186428 40186472 -83889700 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 891 249 139 0 0 chr9 40187296 40187339 -83888833 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 891 438 269 138 50 chr9 40187355 40187664 -83888508 + L1M5 LINE L1 5144 5472 -701 2 891 212 175 0 24 chr9 40187671 40187712 -83888460 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 891 784 197 7 7 chr9 40187712 40187860 -83888312 - B1_Mur2 SINE Alu -1 148 1 2 891 242 257 66 9 chr9 40188065 40188171 -83888001 + L1M5 LINE L1 5781 5892 -348 2 891 305 120 32 11 chr9 40188881 40188974 -83887198 + T-rich Low_complexity Low_complexity 2 96 0 2 891 180 0 0 0 chr9 40189599 40189619 -83886553 + (T)n Simple_repeat Simple_repeat 1 20 0 2 891 205 139 0 44 chr9 40189801 40189846 -83886326 + CT-rich Low_complexity Low_complexity 2 44 0 2 891 540 251 181 5 chr9 40190558 40190762 -83885410 + MER2 DNA MER2_type 7 246 -99 2 891 1869 180 18 59 chr9 40190860 40191102 -83885070 + ORR1D1 LTR MaLR 1 226 -148 2 891 1389 39 0 0 chr9 40191102 40191282 -83884890 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 2 891 1869 180 18 59 chr9 40191282 40191429 -83884743 + ORR1D1 LTR MaLR 227 373 -1 2 891 460 250 60 35 chr9 40191633 40191749 -83884423 - PB1D7 SINE Alu -1 119 1 2 891 256 273 13 13 chr9 40192722 40192800 -83883372 + GA-rich Low_complexity Low_complexity 2 79 0 2 891 202 277 156 21 chr9 40192947 40193043 -83883129 + MIR SINE MIR 15 123 -139 2 891 295 218 0 25 chr9 40193281 40193361 -83882811 + MER2 DNA MER2_type 128 205 -140 2 891 386 255 26 78 chr9 40194152 40194174 -83881998 - B1_Mur1 SINE Alu -38 111 90 3 891 192 77 0 0 chr9 40194174 40194200 -83881972 + (GTTTG)n Simple_repeat Simple_repeat 1 26 0 3 891 421 196 141 0 chr9 40194200 40194292 -83881880 - PB1D9 SINE Alu -13 107 3 3 891 23 0 0 0 chr9 40194371 40194394 -83881778 + AT_rich Low_complexity Low_complexity 1 23 0 3 891 379 328 125 17 chr9 40194686 40194981 -83881191 + L2 LINE L2 2324 2650 -769 3 891 922 152 0 33 chr9 40195174 40195324 -83880848 + B1_Mur4 SINE Alu 5 149 -1 3 891 280 0 0 48 chr9 40195396 40195438 -83880734 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 3 891 563 235 98 8 chr9 40195440 40195573 -83880599 + B1F SINE Alu 2 146 -3 3 891 1693 21 5 0 chr9 40195790 40195981 -83880191 - B2_Mm1a SINE B2 0 193 2 3 891 181 388 0 12 chr9 40196172 40196253 -83879919 - MIRb SINE MIR -149 119 40 3 891 801 190 0 52 chr9 40196422 40196577 -83879595 - B1_Mur3 SINE Alu -2 147 1 3 891 317 336 91 16 chr9 40198125 40198246 -83877926 - MIRb SINE MIR -100 168 39 3 891 648 221 30 54 chr9 40200761 40200928 -83875244 + RSINE1 SINE B4 3 165 0 3 891 254 299 117 0 chr9 40201871 40201948 -83874224 - MIR SINE MIR -73 135 50 3 891 972 237 33 5 chr9 40202087 40202299 -83873873 + ID_B1 SINE B4 7 224 0 3 891 296 342 37 31 chr9 40202356 40202370 -83873802 + RSINE1 SINE B4 2 15 -150 3 891 495 87 0 0 chr9 40202370 40202439 -83873733 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 3 891 296 342 37 31 chr9 40202439 40202587 -83873585 + RSINE1 SINE B4 16 163 -2 3 891 288 167 0 0 chr9 40203273 40203315 -83872857 - MurSatRep1 Unknown Unknown -1864 273 232 3 891 528 16 0 0 chr9 40203315 40203376 -83872796 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 3 891 552 257 14 29 chr9 40203837 40203977 -83872195 + B1F2 SINE Alu 11 148 -1 3 891 234 0 0 0 chr9 40204189 40204215 -83871957 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 891 1033 110 7 0 chr9 40204219 40204364 -83871808 - B1_Mus1 SINE Alu -1 147 2 3 891 180 0 0 0 chr9 40204818 40204838 -83871334 + (CAG)n Simple_repeat Simple_repeat 3 22 0 3 891 361 352 49 8 chr9 40205302 40205425 -83870747 + MIRc SINE MIR 24 151 -117 3 891 300 250 15 0 chr9 40205807 40205875 -83870297 + PB1D10 SINE Alu 14 82 -35 3 891 577 247 12 54 chr9 40205820 40205987 -83870185 + ID_B1 SINE B4 64 223 -1 3 891 228 298 44 67 chr9 40206693 40206783 -83869389 + Charlie7a DNA MER1_type 31 118 -154 3 891 282 206 0 0 chr9 40207712 40207780 -83868392 + A-rich Low_complexity Low_complexity 1 68 0 3 891 187 309 18 0 chr9 40207803 40207858 -83868314 - MIRm SINE MIR -6 270 215 3 891 587 235 0 8 chr9 40207970 40208090 -83868082 + PB1D7 SINE Alu 1 119 -1 3 891 575 249 58 33 chr9 40209719 40209929 -83866243 - MTD LTR MaLR -14 405 168 3 891 591 332 62 23 chr9 40209863 40210119 -83866053 - B4A SINE B4 0 292 27 3 891 217 194 167 77 chr9 40210053 40210131 -83866041 - B3 SINE B2 -129 87 3 3 891 614 164 84 56 chr9 40210157 40210299 -83865873 - B1_Mus1 SINE Alu 0 148 3 3 891 291 180 0 47 chr9 40210306 40210323 -83865849 + A-rich Low_complexity Low_complexity 1 17 0 3 891 1135 89 0 0 chr9 40210323 40210469 -83865703 + B1_Mus1 SINE Alu 1 146 -2 3 891 366 23 0 0 chr9 40210469 40210512 -83865660 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 3 891 1080 136 0 0 chr9 40210512 40210688 -83865484 + (GGGA)n Simple_repeat Simple_repeat 3 178 0 3 891 291 180 0 47 chr9 40210688 40210732 -83865440 + A-rich Low_complexity Low_complexity 18 59 0 3 891 243 0 0 0 chr9 40210886 40210913 -83865259 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 891 489 254 35 0 chr9 40210930 40211044 -83865128 + RSINE1 SINE B4 19 136 -29 3 891 228 67 0 0 chr9 40211065 40211095 -83865077 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 891 585 148 0 0 chr9 40211095 40211223 -83864949 + (GA)n Simple_repeat Simple_repeat 1 128 0 3 891 243 285 79 71 chr9 40211924 40212064 -83864108 - MIR SINE MIR -57 205 65 3 891 1510 116 9 4 chr9 40212064 40212289 -83863883 + URR1A DNA MER1_type 1 226 0 3 891 256 270 78 32 chr9 40212601 40212720 -83863452 + L2a LINE L2 3253 3411 -15 3 891 382 268 11 11 chr9 40212804 40212891 -83863281 + PB1D10 SINE Alu 16 102 -15 3 891 473 308 218 4 chr9 40212916 40213141 -83863031 + B4 SINE B4 9 281 -11 3 891 426 286 27 0 chr9 40213171 40213283 -83862889 + Lx8 LINE L1 7153 7267 -206 3 891 388 322 118 16 chr9 40213400 40213586 -83862586 + ID_B1 SINE B4 13 217 -7 3 891 724 226 191 26 chr9 40214297 40214569 -83861603 - Lx8 LINE L1 -2 7471 7155 3 891 557 246 37 15 chr9 40214831 40214967 -83861205 + B1_Mur1 SINE Alu 1 139 -10 3 891 274 250 25 0 chr9 40214972 40215052 -83861120 + (TAAA)n Simple_repeat Simple_repeat 1 82 0 3 891 619 316 31 57 chr9 40215164 40215239 -83860933 + ID SINE ID 1 73 -151 3 891 441 0 0 0 chr9 40215239 40215288 -83860884 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 3 891 619 316 31 57 chr9 40215288 40215440 -83860732 + ID_B1 SINE B4 74 222 -2 3 891 405 0 0 0 chr9 40215993 40216038 -83860134 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 891 23 78 0 0 chr9 40216526 40216577 -83859595 + AT_rich Low_complexity Low_complexity 1 51 0 3 891 493 236 233 46 chr9 40216775 40216996 -83859176 + B4 SINE B4 1 247 -45 3 891 684 67 0 0 chr9 40216996 40217086 -83859086 + (GGGA)n Simple_repeat Simple_repeat 4 93 0 3 891 436 271 198 74 chr9 40217086 40217107 -83859065 + B4A SINE B4 248 272 -20 3 891 369 0 0 0 chr9 40217125 40217166 -83859006 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 891 2217 86 36 68 chr9 40217423 40217698 -83858474 + ORR1A2 LTR MaLR 2 280 -47 3 891 1208 68 0 0 chr9 40217698 40217845 -83858327 + B1_Mm SINE Alu 1 147 0 3 891 2217 86 36 68 chr9 40217845 40217906 -83858266 + ORR1A2 LTR MaLR 281 327 0 3 891 243 79 0 0 chr9 40218948 40218986 -83857186 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 891 666 155 85 8 chr9 40218986 40219116 -83857056 - B1_Mur4 SINE Alu -10 140 1 3 891 228 325 42 89 chr9 40219116 40219224 -83856948 - MT2B2 LTR ERVL -425 159 62 3 891 433 328 37 7 chr9 40219399 40219534 -83856638 - B1F2 SINE Alu -1 148 10 3 891 544 314 25 19 chr9 40219568 40219698 -83856474 + RSINE1 SINE B4 3 136 -29 3 891 180 77 0 0 chr9 40219698 40219724 -83856448 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 891 544 314 25 19 chr9 40219724 40219755 -83856417 + RSINE1 SINE B4 137 165 0 3 891 264 284 8 25 chr9 40219837 40219956 -83856216 + PB1D10 SINE Alu 1 117 0 3 891 746 163 14 49 chr9 40220440 40220582 -83855590 + B1_Mur3 SINE Alu 13 149 0 3 891 923 157 14 0 chr9 40221499 40221646 -83854526 + B1_Mur3 SINE Alu 1 149 0 3 891 851 249 176 86 chr9 40222063 40222507 -83853665 + RLTR17 LTR ERVK 83 566 -126 3 891 575 271 21 21 chr9 40222600 40222743 -83853429 + B1_Mur4 SINE Alu 3 145 -5 3 891 427 248 72 46 chr9 40222993 40223145 -83853027 + RSINE1 SINE B4 2 157 -8 3 891 455 246 8 23 chr9 40223330 40223463 -83852709 - Lx6 LINE L1 -30 7430 7300 3 891 212 260 138 38 chr9 40223855 40223935 -83852237 + B1F2 SINE Alu 1 88 -61 3 891 887 206 70 11 chr9 40223952 40224138 -83852034 + B4 SINE B4 96 292 0 3 891 227 243 9 0 chr9 40224162 40224177 -83851995 + (CA)n Simple_repeat Simple_repeat 1 15 0 3 891 2554 58 3 58 chr9 40224177 40224523 -83851649 - ORR1A2 LTR MaLR 0 327 1 3 891 227 243 9 0 chr9 40224523 40224614 -83851558 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 891 241 286 10 39 chr9 40224946 40225048 -83851124 - BC1_Mm scRNA scRNA -37 115 17 3 891 271 224 60 128 chr9 40225060 40225193 -83850979 - PB1 SINE Alu -2 125 2 3 891 393 305 43 61 chr9 40225351 40225515 -83850657 + Charlie19a DNA Charlie 111 271 -115 3 891 253 252 96 55 chr9 40225536 40225655 -83850517 + MIRb SINE MIR 39 164 -112 3 891 781 232 0 25 chr9 40226115 40226274 -83849898 - RSINE1 SINE B4 -2 163 9 3 891 545 263 22 7 chr9 40226871 40227009 -83849163 - B1_Mur2 SINE Alu -9 140 1 3 891 457 258 0 10 chr9 40227012 40227110 -83849062 - PB1D10 SINE Alu 0 117 21 3 891 244 242 60 15 chr9 40227050 40227117 -83849055 - B4A SINE B4 -125 167 98 3 891 318 87 0 0 chr9 40227145 40227191 -83848981 + (CGGGGG)n Simple_repeat Simple_repeat 2 47 0 3 891 1269 129 0 10 chr9 40227290 40227486 -83848686 + B2_Mm2 SINE B2 1 194 -1 3 891 761 208 14 14 chr9 40227506 40227652 -83848520 + B3 SINE B2 71 216 0 3 891 21 0 0 0 chr9 40227700 40227721 -83848451 + AT_rich Low_complexity Low_complexity 1 21 0 3 891 332 279 260 0 chr9 40227829 40227983 -83848189 - MER3 DNA MER1_type -14 195 2 3 891 271 286 54 21 chr9 40228415 40228508 -83847664 + L2 LINE L2 2705 2800 -619 3 891 208 147 0 0 chr9 40228624 40228658 -83847514 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 891 3811 91 30 4 chr9 40228993 40229523 -83846649 + L1_Mus1 LINE L1 6024 6567 0 3 891 555 234 27 0 chr9 40229791 40229902 -83846270 + PB1D9 SINE Alu 1 114 -6 3 891 287 342 58 88 chr9 40229794 40229999 -83846173 + MT2B LTR ERVL 168 366 -235 3 891 1155 75 0 7 chr9 40230670 40230817 -83845355 + B1_Mus2 SINE Alu 1 146 -1 3 891 394 340 91 27 chr9 40231698 40231919 -83844253 + ORR1E LTR MaLR 1 221 -149 3 891 528 252 130 0 chr9 40232114 40232245 -83843927 - MER63A DNA AcHobo -56 154 7 4 891 261 0 0 0 chr9 40232297 40232326 -83843846 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 891 748 163 65 29 chr9 40232335 40232474 -83843698 + B1_Mur2 SINE Alu 6 149 0 4 891 231 265 115 93 chr9 40232540 40232594 -83843578 - B2_Mm2 SINE B2 -8 187 1 4 891 439 221 108 54 chr9 40232594 40232723 -83843449 - RSINE1 SINE B4 -28 137 2 4 891 816 240 18 67 chr9 40232828 40233057 -83843115 - B3A SINE B2 0 198 2 4 891 729 0 0 0 chr9 40233074 40233155 -83843017 + (TTTTG)n Simple_repeat Simple_repeat 2 82 0 4 891 366 291 12 0 chr9 40233180 40233266 -83842906 - PB1D10 SINE Alu -29 88 2 4 891 181 341 154 0 chr9 40233328 40233419 -83842753 - MIRc SINE MIR -144 124 20 4 891 614 274 138 50 chr9 40234301 40234562 -83841610 + B4A SINE B4 1 284 -8 4 891 1177 76 0 0 chr9 40234950 40235095 -83841077 + B1_Mus2 SINE Alu 2 146 -1 4 891 630 39 0 0 chr9 40235095 40235172 -83841000 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 891 301 245 64 0 chr9 40235397 40235491 -83840681 - PB1D10 SINE Alu -7 110 11 4 891 281 281 101 135 chr9 40235541 40235689 -83840483 - ID_B1 SINE B4 0 224 82 4 891 353 250 26 44 chr9 40235998 40236111 -83840061 - B1F SINE Alu -7 142 32 4 891 297 297 27 9 chr9 40236260 40236372 -83839800 + PB1D7 SINE Alu 1 114 -6 4 891 304 275 71 35 chr9 40236550 40236663 -83839509 - PB1D10 SINE Alu 0 117 1 4 891 260 231 15 15 chr9 40237275 40237341 -83838831 - PB1D10 SINE Alu -6 111 46 4 891 201 250 0 0 chr9 40237934 40237982 -83838190 - L2c LINE L2 -2 3385 3338 4 891 288 288 12 24 chr9 40238019 40238101 -83838071 + PB1D7 SINE Alu 39 119 -1 4 891 1072 119 6 6 chr9 40238119 40238297 -83837875 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 891 232 253 11 11 chr9 40238298 40238390 -83837782 + GA-rich Low_complexity Low_complexity 4 95 0 4 891 366 305 0 28 chr9 40238822 40238930 -83837242 + Lx8 LINE L1 7015 7119 -354 4 892 257 338 40 20 chr9 40239472 40239620 -83836552 + MIR3 SINE MIR 37 187 -21 4 892 635 247 102 27 chr9 40240038 40240225 -83835947 - B3 SINE B2 -2 214 14 4 892 2229 114 45 11 chr9 40240262 40240617 -83835555 - ORR1B2 LTR MaLR 0 367 1 4 892 300 246 58 0 chr9 40241323 40241392 -83834780 - ID_B1 SINE B4 -5 219 147 4 892 1317 92 27 11 chr9 40241392 40241578 -83834594 - B2_Mm2 SINE B2 -2 193 5 4 892 181 0 33 33 chr9 40242054 40242084 -83834088 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 4 892 216 158 0 0 chr9 40242956 40242994 -83833178 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 4 892 310 276 0 38 chr9 40243049 40243128 -83833044 + ID2 SINE ID 8 83 0 4 892 28 48 0 0 chr9 40243164 40243206 -83832966 + AT_rich Low_complexity Low_complexity 1 42 0 4 892 275 303 15 0 chr9 40244140 40244206 -83831966 + MTEa LTR MaLR 293 359 -20 4 892 687 180 0 0 chr9 40244545 40244764 -83831408 + (TG)n Simple_repeat Simple_repeat 1 219 0 4 892 802 257 23 19 chr9 40244822 40245036 -83831136 + B3 SINE B2 2 216 0 4 892 341 298 16 58 chr9 40245958 40246079 -83830093 + PB1D10 SINE Alu 1 116 -1 4 892 365 339 81 41 chr9 40247498 40247557 -83828615 + MLT1A1 LTR MaLR 2 62 -346 4 892 236 71 48 0 chr9 40247557 40247599 -83828573 + (CAGAGA)n Simple_repeat Simple_repeat 5 48 0 4 892 504 274 77 24 chr9 40247599 40247881 -83828291 + MLT1A1 LTR MaLR 61 406 -2 4 892 532 329 27 0 chr9 40248308 40248454 -83827718 - RSINE1 SINE B4 -14 151 2 4 892 1061 256 29 72 chr9 40248681 40249055 -83827117 + ORR1E LTR MaLR 2 359 0 4 892 207 69 0 0 chr9 40249250 40249279 -83826893 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 892 576 243 66 92 chr9 40249279 40249506 -83826666 - ID_B1 SINE B4 -2 222 2 4 892 247 344 65 30 chr9 40250101 40250302 -83825870 + L3b LINE CR1 139 346 -136 4 892 693 275 99 0 chr9 40250888 40251070 -83825102 + ID_B1 SINE B4 8 207 -17 4 892 618 14 0 0 chr9 40251070 40251141 -83825031 + (GGA)n Simple_repeat Simple_repeat 1 71 0 4 892 371 298 33 27 chr9 40251546 40251729 -83824443 + MER4B-int LTR ERV1 4105 4288 -2470 4 892 1029 326 77 75 chr9 40252590 40253623 -83822549 + MER21-int LTR ERV1 2182 3216 -975 4 892 329 296 34 138 chr9 40253849 40254088 -83822084 - MLT1A LTR MaLR -160 214 1 4 892 576 215 75 30 chr9 40254247 40254381 -83821791 + B1_Mur2 SINE Alu 1 140 -9 4 892 486 100 22 22 chr9 40254381 40254462 -83821710 + (GGA)n Simple_repeat Simple_repeat 1 83 0 4 892 216 0 0 0 chr9 40254462 40254486 -83821686 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 892 486 100 22 22 chr9 40254486 40254496 -83821676 + (GGA)n Simple_repeat Simple_repeat 3 11 0 4 892 579 235 202 0 chr9 40254510 40254693 -83821479 + ID_B1 SINE B4 2 221 -3 4 892 252 326 97 7 chr9 40254695 40254840 -83821332 + MER21-int LTR ERV1 3666 3823 -368 4 892 512 299 28 11 chr9 40254912 40255091 -83821081 + MER21-int LTR ERV1 3913 4094 -97 4 892 239 310 35 123 chr9 40255607 40255721 -83820451 + PB1D10 SINE Alu 1 104 -13 4 892 675 0 0 0 chr9 40255723 40255798 -83820374 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 4 892 604 233 0 0 chr9 40255838 40255958 -83820214 + ID_B1 SINE B4 105 224 0 4 892 219 69 0 0 chr9 40256903 40256932 -83819240 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 4 892 295 279 0 0 chr9 40256944 40257012 -83819160 - ID4_ SINE ID -14 69 2 4 892 330 307 100 6 chr9 40257993 40258157 -83818015 + MIRb SINE MIR 50 247 -21 4 892 385 278 72 0 chr9 40259112 40259209 -83816963 + PB1D10 SINE Alu 1 104 -13 4 892 309 109 0 0 chr9 40259210 40259256 -83816916 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 4 892 645 98 0 0 chr9 40259443 40259555 -83816617 + (TC)n Simple_repeat Simple_repeat 1 112 0 4 892 297 0 0 0 chr9 40259555 40259588 -83816584 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 892 275 346 168 0 chr9 40260179 40260280 -83815892 + MER2 DNA MER2_type 1 118 -227 4 892 322 274 26 94 chr9 40260274 40260391 -83815781 - PB1D10 SINE Alu -5 115 7 4 892 597 238 14 27 chr9 40260378 40260521 -83815651 + MER2 DNA MER2_type 87 227 -118 4 892 549 293 0 39 chr9 40260521 40260649 -83815523 + RSINE1 SINE B4 3 125 -40 4 892 354 74 0 0 chr9 40260649 40260703 -83815469 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 892 423 56 0 0 chr9 40260703 40260757 -83815415 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 892 292 280 168 53 chr9 40260775 40260888 -83815284 + MER2 DNA MER2_type 217 342 -3 4 892 223 136 0 43 chr9 40261687 40261733 -83814439 + (GTTTG)n Simple_repeat Simple_repeat 5 48 0 4 892 235 266 43 31 chr9 40261735 40261836 -83814336 - B1F2 SINE Alu -7 110 12 4 892 276 324 52 35 chr9 40261787 40261902 -83814270 - ID_B1 SINE B4 -82 142 26 4 892 248 111 22 0 chr9 40263772 40263817 -83812355 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 892 340 307 61 38 chr9 40264914 40265046 -83811126 + B4 SINE B4 70 204 -88 4 892 757 177 0 0 chr9 40264935 40265059 -83811113 + B1_Mur4 SINE Alu 6 129 -21 4 892 450 0 0 0 chr9 40265649 40265699 -83810473 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 892 317 250 0 0 chr9 40266049 40266109 -83810063 + ID_B1 SINE B4 137 196 -28 4 892 405 39 0 0 chr9 40266113 40266164 -83810008 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 4 892 414 0 0 0 chr9 40266180 40266226 -83809946 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 892 195 306 78 43 chr9 40267395 40267511 -83808661 + L3b LINE CR1 242 361 -121 4 892 399 254 18 98 chr9 40267641 40267788 -83808384 + PB1D10 SINE Alu 13 149 0 4 892 511 292 6 61 chr9 40268057 40268221 -83807951 + RSINE1 SINE B4 11 165 0 4 892 458 250 58 14 chr9 40269300 40269438 -83806734 + B1F SINE Alu 1 144 -5 4 892 205 302 31 101 chr9 40269550 40269679 -83806493 - L2 LINE L2 -575 2844 2725 4 892 225 262 21 116 chr9 40270532 40270627 -83805545 + B4 SINE B4 5 90 -202 4 892 26 74 0 0 chr9 40270627 40270681 -83805491 + AT_rich Low_complexity Low_complexity 1 54 0 4 892 702 206 7 46 chr9 40270928 40271081 -83805091 - B1_Mur1 SINE Alu -1 148 2 4 892 485 285 69 0 chr9 40271636 40271780 -83804392 - RSINE1 SINE B4 -10 155 2 4 892 3670 24 0 2 chr9 40271984 40272404 -83803768 + L1Md_F2 LINE L1 6152 6570 -12 4 892 256 309 50 76 chr9 40272454 40272573 -83803599 - MIRb SINE MIR -44 218 103 4 892 297 172 0 0 chr9 40274396 40274460 -83801712 + T-rich Low_complexity Low_complexity 1 64 0 4 892 282 288 62 12 chr9 40275667 40275748 -83800424 + B4A SINE B4 1 85 -207 4 892 384 155 0 0 chr9 40275881 40275952 -83800220 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 892 698 206 52 0 chr9 40276008 40276144 -83800028 - B1_Mur1 SINE Alu -5 144 2 4 892 291 85 0 0 chr9 40276328 40276375 -83799797 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 4 892 902 139 14 14 chr9 40276375 40276512 -83799660 - B1_Mur3 SINE Alu -8 141 3 4 892 239 360 80 9 chr9 40276515 40276627 -83799545 - MIR SINE MIR -113 149 30 4 892 1279 109 0 35 chr9 40278083 40278282 -83797890 - B2_Mm2 SINE B2 -3 192 1 4 892 1206 68 0 0 chr9 40278322 40278469 -83797703 - B1_Mus2 SINE Alu 0 147 1 4 892 195 42 0 0 chr9 40278520 40278544 -83797628 + (TTA)n Simple_repeat Simple_repeat 3 26 0 4 892 762 175 0 0 chr9 40279027 40279170 -83797002 + A-rich Low_complexity Low_complexity 5 147 0 4 892 341 286 60 0 chr9 40279588 40279672 -83796500 - PB1D7 SINE Alu -30 90 2 5 892 288 330 0 31 chr9 40279598 40279695 -83796477 - ID_B1 SINE B4 -71 153 60 5 892 231 183 200 0 chr9 40279675 40279735 -83796437 - PB1D10 SINE Alu 0 117 46 5 892 398 312 94 44 chr9 40279867 40280142 -83796030 - B4A SINE B4 -2 290 2 5 892 189 209 145 29 chr9 40280562 40280631 -83795541 + MIRb SINE MIR 177 253 -15 5 892 240 296 61 0 chr9 40281808 40281906 -83794266 + MIRb SINE MIR 24 127 -141 5 892 2499 138 26 0 chr9 40281954 40282338 -83793834 - ORR1B1 LTR MaLR 0 394 1 5 892 499 281 58 79 chr9 40282532 40282810 -83793362 + B4A SINE B4 3 274 -18 5 892 239 275 20 34 chr9 40282941 40283088 -83793084 + (TA)n Simple_repeat Simple_repeat 1 145 0 5 892 1102 71 0 0 chr9 40283617 40283758 -83792414 - B1_Mm SINE Alu -5 142 2 5 892 723 233 0 0 chr9 40284334 40284510 -83791662 + CT-rich Low_complexity Low_complexity 3 178 0 5 892 192 313 0 29 chr9 40287678 40287747 -83788425 + L2a LINE L2 3341 3407 -19 5 892 230 310 27 27 chr9 40288092 40288165 -83788007 - RSINE1 SINE B4 -85 80 8 5 892 221 293 122 0 chr9 40289484 40289566 -83786606 + PB1D7 SINE Alu 22 113 -7 5 892 22 0 0 0 chr9 40289574 40289596 -83786576 + AT_rich Low_complexity Low_complexity 1 22 0 5 892 1167 75 0 0 chr9 40290248 40290395 -83785777 + B1_Mus1 SINE Alu 2 148 0 5 892 242 136 0 29 chr9 40290397 40290465 -83785707 + A-rich Low_complexity Low_complexity 1 66 0 5 892 252 308 15 0 chr9 40290478 40290543 -83785629 + ID4 SINE ID 2 67 -16 5 892 450 0 0 0 chr9 40290549 40290599 -83785573 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 892 196 329 97 19 chr9 40290784 40290939 -83785233 + MIR SINE MIR 36 202 -60 5 892 22 0 0 0 chr9 40291050 40291072 -83785100 + AT_rich Low_complexity Low_complexity 1 22 0 5 892 428 273 71 1 chr9 40291279 40291435 -83784737 + MLT1A1 LTR MaLR 4 166 -199 5 892 632 77 11 0 chr9 40291443 40291534 -83784638 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 892 519 266 39 8 chr9 40291535 40291664 -83784508 - RSINE1 SINE B4 -25 140 8 5 892 1042 187 5 19 chr9 40291803 40292016 -83784156 - URR1A DNA MER1_type -2 224 15 5 892 225 315 0 0 chr9 40292099 40292172 -83784000 + ID4 SINE ID 6 78 -5 5 892 3685 59 17 0 chr9 40292564 40293023 -83783149 - L1_Mus1 LINE L1 0 6567 6101 5 892 465 19 0 0 chr9 40293038 40293092 -83783080 + (TTTTA)n Simple_repeat Simple_repeat 5 58 0 5 892 306 148 0 0 chr9 40293370 40293424 -83782748 + Lx2 LINE L1 6944 6997 0 5 892 216 0 0 0 chr9 40293446 40293470 -83782702 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 892 263 339 11 11 chr9 40293470 40293573 -83782599 + MLT1A1 LTR MaLR 225 365 -43 5 892 319 327 36 18 chr9 40294445 40294557 -83781615 + MLT1F LTR MaLR 42 155 -393 5 892 504 0 0 0 chr9 40294568 40294624 -83781548 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 892 470 305 120 9 chr9 40294627 40294852 -83781320 + MLT1F LTR MaLR 202 451 -97 5 892 626 272 43 61 chr9 40294870 40295148 -83781024 - B4A SINE B4 -18 274 2 5 892 650 13 13 0 chr9 40295920 40295999 -83780173 + (GA)n Simple_repeat Simple_repeat 2 81 0 5 892 434 274 25 25 chr9 40297018 40297138 -83779034 - ID_B1 SINE B4 -21 203 84 5 892 411 167 117 43 chr9 40297816 40297910 -83778262 - B1F SINE Alu -39 110 10 5 892 215 324 95 0 chr9 40298057 40298131 -83778041 - ID4_ SINE ID 0 83 3 5 892 483 191 106 0 chr9 40298178 40298272 -83777900 + PB1D9 SINE Alu 5 108 -12 5 892 576 0 0 0 chr9 40298275 40298339 -83777833 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 5 892 1341 244 0 63 chr9 40298402 40298717 -83777455 + Lx6 LINE L1 7140 7434 -26 5 892 205 152 0 0 chr9 40299407 40299440 -83776732 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 5 892 36161 44 1 3 chr9 40299671 40304963 -83771209 + L1Md_T LINE L1 211 5589 -297 5 892 8678 27 1 0 chr9 40304963 40305958 -83770214 + L1Md_T LINE L1 5590 6585 0 5 892 350 303 23 8 chr9 40306089 40306222 -83769950 - L1MC3 LINE L1 -1 7784 7650 5 892 428 281 126 0 chr9 40306223 40306358 -83769814 + ID_B1 SINE B4 72 223 -1 5 892 265 221 0 0 chr9 40306366 40306434 -83769738 - L1MC3 LINE L1 -136 7649 7582 5 892 26 0 0 0 chr9 40306475 40306501 -83769671 + AT_rich Low_complexity Low_complexity 1 26 0 5 892 1336 91 0 6 chr9 40306577 40306756 -83769416 + Lx2 LINE L1 6456 6632 -365 5 892 1497 132 4 0 chr9 40306756 40306990 -83769182 + Lx2 LINE L1 6763 6997 0 5 892 1036 163 29 38 chr9 40306990 40307020 -83769152 + Lx2 LINE L1 6283 6314 -322 5 892 273 57 0 0 chr9 40307093 40307128 -83769044 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 5 892 249 83 0 0 chr9 40307336 40307372 -83768800 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 892 379 324 86 0 chr9 40307382 40307521 -83768651 - RSINE1 SINE B4 -10 155 5 5 892 251 255 38 29 chr9 40307520 40307625 -83768547 - MLT1A0 LTR MaLR -41 324 219 5 892 513 0 0 0 chr9 40308696 40308753 -83767419 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 892 583 237 0 49 chr9 40309360 40309502 -83766670 + B1_Mur1 SINE Alu 2 136 -13 5 892 1034 98 0 12 chr9 40309503 40309751 -83766421 + (GAAA)n Simple_repeat Simple_repeat 1 244 0 5 892 375 23 0 0 chr9 40309751 40309794 -83766378 + (GGGA)n Simple_repeat Simple_repeat 1 44 0 5 892 276 317 71 14 chr9 40310063 40310225 -83765947 - MIRb SINE MIR -77 191 14 5 892 466 351 56 43 chr9 40310389 40310621 -83765551 + LTR33 LTR ERVL 49 283 -232 5 892 324 0 0 0 chr9 40311523 40311559 -83764613 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 892 837 85 31 8 chr9 40311559 40311689 -83764483 - B1_Mur4 SINE Alu -9 141 9 5 892 288 0 0 0 chr9 40311812 40311844 -83764328 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 892 954 257 46 4 chr9 40312511 40312749 -83763423 + MTEb LTR MaLR 78 325 -54 5 892 202 237 0 26 chr9 40312754 40312832 -83763340 + CT-rich Low_complexity Low_complexity 3 78 0 5 892 389 141 0 0 chr9 40312833 40312897 -83763275 + MTEb LTR MaLR 315 378 -1 5 892 309 51 0 0 chr9 40313892 40313931 -83762241 + (TAAAA)n Simple_repeat Simple_repeat 5 43 0 5 892 1482 264 140 51 chr9 40313944 40314144 -83762028 + L1MB7 LINE L1 5273 5488 -696 5 892 1341 235 111 31 chr9 40314144 40314495 -83761677 + MTEa LTR MaLR 1 379 0 5 892 1482 264 140 51 chr9 40314495 40315121 -83761051 + L1MB7 LINE L1 5489 6173 -11 5 892 315 0 0 0 chr9 40315911 40315946 -83760226 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 892 261 0 0 0 chr9 40316306 40316335 -83759837 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 892 572 239 44 7 chr9 40316518 40316653 -83759519 - B1F SINE Alu -5 144 5 5 892 707 308 159 4 chr9 40316701 40316952 -83759220 + B4A SINE B4 1 290 -2 5 892 1318 125 0 5 chr9 40317385 40317578 -83758594 - B2_Mm2 SINE B2 -3 192 1 5 892 181 315 43 21 chr9 40318294 40318388 -83757784 + MIRc SINE MIR 66 161 -107 5 892 189 107 0 0 chr9 40320259 40320287 -83755885 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 892 903 276 81 4 chr9 40320287 40320545 -83755627 - B4A SINE B4 -6 286 9 5 892 563 74 12 0 chr9 40321088 40321169 -83755003 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 5 892 293 35 16 65 chr9 40322017 40322079 -83754093 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 5 892 213 338 66 26 chr9 40322482 40322634 -83753538 + L2c LINE L2 3049 3206 -181 5 892 706 166 65 0 chr9 40322989 40323128 -83753044 - B1_Mus1 SINE Alu -2 148 1 5 892 666 280 53 62 chr9 40323131 40323356 -83752816 - ID_B1 SINE B4 0 224 2 5 892 1013 105 14 0 chr9 40324028 40324171 -83752001 + B1_Mus1 SINE Alu 4 148 0 5 892 212 66 62 47 chr9 40324171 40324235 -83751937 + A-rich Low_complexity Low_complexity 1 65 0 5 892 213 163 23 0 chr9 40324751 40324794 -83751378 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 892 534 341 0 24 chr9 40324811 40324979 -83751193 - RSINE1 SINE B4 0 165 2 5 892 864 251 20 5 chr9 40326601 40326805 -83749367 - B3 SINE B2 -6 210 4 5 892 364 208 0 14 chr9 40327390 40327463 -83748709 + ID4 SINE ID 5 76 -7 5 892 783 323 13 0 chr9 40327531 40327760 -83748412 - B4A SINE B4 -2 290 59 5 892 765 31 0 0 chr9 40329772 40329868 -83746304 + (TC)n Simple_repeat Simple_repeat 1 96 0 5 892 445 194 54 0 chr9 40329869 40329962 -83746210 - PB1D9 SINE Alu -21 99 2 5 892 354 335 94 39 chr9 40330681 40330967 -83745205 + L2c LINE L2 3041 3342 -45 5 892 196 100 50 0 chr9 40332420 40332460 -83743712 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 5 892 261 0 0 0 chr9 40334231 40334260 -83741912 + (TGGG)n Simple_repeat Simple_repeat 3 31 0 5 892 297 0 0 0 chr9 40337461 40337494 -83738678 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 892 224 310 14 0 chr9 40339064 40339135 -83737037 + C-rich Low_complexity Low_complexity 4 75 0 5 892 405 194 152 8 chr9 40340790 40340915 -83735257 - B2_Mm2 SINE B2 -6 189 47 5 892 1298 90 6 11 chr9 40340962 40341141 -83735031 - B2_Mm1t SINE B2 -14 179 2 5 892 348 24 0 0 chr9 40341196 40341237 -83734935 + (TTG)n Simple_repeat Simple_repeat 3 43 0 5 892 296 291 0 0 chr9 40341242 40341321 -83734851 - ID4 SINE ID -3 80 2 5 892 271 304 45 72 chr9 40341728 40341939 -83734233 + MIR SINE MIR 4 202 -6 5 892 835 239 29 24 chr9 40341947 40342157 -83734015 + B3 SINE B2 1 211 -5 5 892 891 286 4 15 chr9 40342671 40342930 -83733242 - B4A SINE B4 -36 256 1 5 892 215 338 13 51 chr9 40343357 40343435 -83732737 - ID4_ SINE ID -4 79 5 5 892 21 0 0 0 chr9 40344058 40344079 -83732093 + AT_rich Low_complexity Low_complexity 1 21 0 6 892 450 0 0 0 chr9 40344089 40344139 -83732033 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 892 334 278 0 0 chr9 40344206 40344278 -83731894 - RSINE1 SINE B4 -92 73 2 6 892 328 285 42 36 chr9 40344312 40344453 -83731719 - MIRb SINE MIR -41 227 79 6 892 364 304 81 12 chr9 40344987 40345160 -83731012 - MIR SINE MIR -37 225 41 6 892 591 15 0 0 chr9 40345210 40345278 -83730894 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 892 360 0 0 0 chr9 40345278 40345317 -83730855 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 892 276 300 0 48 chr9 40346751 40346835 -83729337 + B4 SINE B4 61 140 -152 6 892 628 261 127 26 chr9 40347041 40347269 -83728903 - MLT1A0 LTR MaLR -107 258 8 6 892 370 305 68 121 chr9 40348681 40349020 -83727152 + MLT1A LTR MaLR 18 338 -36 6 892 206 194 31 31 chr9 40350593 40350611 -83725561 + A-rich Low_complexity Low_complexity 2 19 0 6 892 1226 41 7 0 chr9 40350611 40350757 -83725415 + B1_Mus1 SINE Alu 2 148 0 6 892 206 194 31 31 chr9 40350757 40350802 -83725370 + A-rich Low_complexity Low_complexity 20 65 0 6 892 244 236 55 0 chr9 40350808 40350863 -83725309 + B1F2 SINE Alu 2 59 -90 6 892 267 74 101 0 chr9 40350926 40350979 -83725193 - B1_Mus1 SINE Alu -92 57 2 6 892 313 276 15 75 chr9 40351089 40351222 -83724950 - L1MD LINE L1 -1101 5045 4921 6 892 558 329 66 15 chr9 40351329 40351760 -83724412 - L1M5 LINE L1 -1402 4744 4289 6 892 290 277 149 0 chr9 40351907 40352001 -83724171 + PB1D10 SINE Alu 1 108 -9 6 892 780 163 13 33 chr9 40352395 40352547 -83723625 + B1_Mur4 SINE Alu 2 150 0 6 892 564 295 36 6 chr9 40353260 40353427 -83722745 - B4A SINE B4 -50 242 71 6 892 301 222 31 82 chr9 40353488 40353586 -83722586 - B4A SINE B4 -198 94 2 6 892 338 345 50 28 chr9 40353586 40353756 -83722416 + Zaphod DNA Tip100 463 636 -3395 6 892 429 227 112 28 chr9 40353806 40353954 -83722218 - MTD LTR MaLR -263 156 3 6 892 570 51 0 0 chr9 40354106 40354184 -83721988 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 892 895 250 18 57 chr9 40354185 40354414 -83721758 - ID_B1 SINE B4 0 224 5 6 892 277 249 157 82 chr9 40354418 40354737 -83721435 + Zaphod DNA Tip100 646 988 -3043 6 892 382 317 76 24 chr9 40354739 40354949 -83721223 + MER58A DNA MER1_type 4 224 0 6 892 368 275 233 15 chr9 40354963 40355306 -83720866 + Zaphod DNA Tip100 3604 4021 -10 6 892 650 204 106 0 chr9 40356908 40357040 -83719132 + MTC LTR MaLR 223 368 -53 6 892 282 159 0 0 chr9 40357181 40357250 -83718922 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 892 238 348 0 0 chr9 40357256 40357325 -83718847 - ID4 SINE ID -13 70 2 6 892 331 244 70 0 chr9 40357494 40357580 -83718592 + Lx8 LINE L1 7167 7258 -215 6 892 221 236 0 18 chr9 40357651 40357707 -83718465 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 892 1408 201 106 3 chr9 40357854 40358193 -83717979 + ORR1D1 LTR MaLR 1 374 0 6 892 1983 261 110 16 chr9 40358928 40359456 -83716716 + Lx8 LINE L1 6477 7062 -411 6 892 1930 161 35 14 chr9 40359456 40359822 -83716350 - ORR1D1 LTR MaLR 0 374 1 6 892 1983 261 110 16 chr9 40359822 40359902 -83716270 + Lx8 LINE L1 7063 7142 -331 6 892 286 250 22 151 chr9 40359904 40360083 -83716089 + Lx8 LINE L1 7300 7455 -18 6 892 2233 191 19 97 chr9 40360103 40360641 -83715531 + RLTR18B LTR ERVK 14 509 -3 6 892 3562 149 32 21 chr9 40362329 40362961 -83713211 - L1_Mur2 LINE L1 -380 5497 4859 6 892 225 304 0 28 chr9 40363194 40363265 -83712907 + L2c LINE L2 3317 3385 -2 6 892 382 121 0 15 chr9 40364822 40365051 -83711121 + L1_Mus2 LINE L1 6494 6566 0 6 892 245 240 38 51 chr9 40365305 40365384 -83710788 - MLT1G1 LTR MaLR -47 532 455 6 892 295 262 9 53 chr9 40365575 40365688 -83710484 + ID_B1 SINE B4 117 224 0 6 892 406 331 46 6 chr9 40365672 40365845 -83710327 - MLT1H LTR MaLR -314 235 56 6 892 259 400 43 4 chr9 40366097 40366328 -83709844 + MIRb SINE MIR 27 266 -2 6 892 223 364 100 8 chr9 40366447 40366465 -83709707 - B4 SINE B4 -63 229 88 6 892 391 300 9 18 chr9 40366465 40366577 -83709595 - PB1D10 SINE Alu -4 113 3 6 892 275 307 23 23 chr9 40366592 40366722 -83709450 - MIR3 SINE MIR -1 207 78 6 892 758 191 109 0 chr9 40366968 40367115 -83709057 + RSINE1 SINE B4 3 165 0 6 892 1269 28 0 0 chr9 40367148 40367293 -83708879 + B1_Mm SINE Alu 1 145 -2 6 892 225 0 0 0 chr9 40367302 40367327 -83708845 + (TAA)n Simple_repeat Simple_repeat 1 25 0 6 892 216 158 0 0 chr9 40368122 40368160 -83708012 + A-rich Low_complexity Low_complexity 1 38 0 6 892 217 275 224 18 chr9 40368220 40368390 -83707782 + L2 LINE L2 107 311 -3108 6 892 932 241 91 74 chr9 40368405 40368768 -83707404 - RLTR14 LTR ERV1 -12 370 2 6 892 460 256 211 55 chr9 40369604 40369841 -83706331 + MLT2B1 LTR ERVL 283 567 0 6 892 247 250 0 103 chr9 40369921 40370028 -83706144 - MLT1A1 LTR MaLR -312 96 1 6 893 466 289 92 0 chr9 40370474 40370616 -83705556 + MLT1A0 LTR MaLR 211 365 0 6 893 485 265 39 1 chr9 40370667 40370818 -83705354 + L1M3 LINE L1 5350 5507 -784 6 893 1045 77 28 0 chr9 40370834 40370977 -83705195 + B1_Mus2 SINE Alu 1 147 0 6 893 266 26 0 50 chr9 40370979 40371019 -83705153 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 893 367 212 25 0 chr9 40371021 40371101 -83705071 + ID_B1 SINE B4 133 214 -10 6 893 300 331 99 0 chr9 40371131 40371282 -83704890 + L1M3 LINE L1 5485 5650 -662 6 893 1766 200 56 0 chr9 40371285 40371660 -83704512 - MTD LTR MaLR -1 418 23 6 893 1193 265 18 44 chr9 40371700 40372176 -83703996 + L1MB3 LINE L1 5657 6165 -18 6 893 768 257 42 37 chr9 40372209 40372423 -83703749 - ID_B1 SINE B4 -7 217 3 6 893 21 0 0 0 chr9 40372433 40372454 -83703718 + AT_rich Low_complexity Low_complexity 1 21 0 6 893 2186 105 3 0 chr9 40373277 40373590 -83702582 + ORR1A2 LTR MaLR 1 314 -13 6 893 353 243 48 0 chr9 40373797 40373900 -83702272 + MER57D LTR ERV1 27 134 -277 6 893 243 268 0 0 chr9 40375160 40375216 -83700956 - MIR SINE MIR -197 65 10 6 893 591 178 0 0 chr9 40375393 40375500 -83700672 + B2_Mm2 SINE B2 3 109 -86 6 893 342 0 0 0 chr9 40375575 40375613 -83700559 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 6 893 200 355 163 0 chr9 40376758 40376924 -83699248 + MIRb SINE MIR 57 249 -19 6 893 188 181 0 0 chr9 40377261 40377301 -83698871 - MIRc SINE MIR -120 156 114 6 893 253 208 143 20 chr9 40378058 40378156 -83698016 + MLT1A1 LTR MaLR 268 377 -31 6 893 246 179 34 114 chr9 40378403 40378491 -83697681 + PB1D10 SINE Alu 36 116 -1 6 893 209 33 33 0 chr9 40378548 40378578 -83697594 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 6 893 2314 172 3 0 chr9 40379355 40379733 -83696439 - RLTR14 LTR ERV1 -3 379 1 6 893 325 272 135 58 chr9 40380182 40380338 -83695834 - ORR1E LTR MaLR -104 255 88 6 893 243 203 0 0 chr9 40380783 40380842 -83695330 + (TAA)n Simple_repeat Simple_repeat 3 61 0 6 893 21 0 0 0 chr9 40382038 40382059 -83694113 + AT_rich Low_complexity Low_complexity 1 21 0 6 893 241 26 53 0 chr9 40382454 40382492 -83693680 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 893 686 12 0 12 chr9 40382495 40382579 -83693593 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 6 893 671 258 7 177 chr9 40382627 40382910 -83693262 - Lx7 LINE L1 -395 7301 7067 6 893 862 179 98 39 chr9 40382943 40383146 -83693026 - B3 SINE B2 -1 215 1 6 893 320 301 113 19 chr9 40384840 40384999 -83691173 + MIRb SINE MIR 67 240 -28 6 893 656 103 233 0 chr9 40385198 40385314 -83690858 - B1_Mus1 SINE Alu -1 147 5 6 893 424 309 95 64 chr9 40386059 40386342 -83689830 + B4A SINE B4 1 292 0 6 893 405 299 27 14 chr9 40386426 40386572 -83689600 + B1F SINE Alu 1 148 -1 6 893 306 0 0 0 chr9 40387585 40387619 -83688553 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 893 1491 134 9 0 chr9 40388061 40388285 -83687887 + URR1A DNA MER1_type 1 226 0 6 893 1081 97 13 13 chr9 40388308 40388610 -83687562 + (CA)n Simple_repeat Simple_repeat 1 302 0 6 893 305 333 21 43 chr9 40388655 40388796 -83687376 - LTR85c LTR Gypsy? -275 548 411 6 893 585 232 80 0 chr9 40388810 40388961 -83687211 + RSINE1 SINE B4 3 165 0 6 893 1377 68 40 0 chr9 40389013 40389190 -83686982 + B2_Mm2 SINE B2 4 187 -8 6 893 2317 171 44 13 chr9 40389201 40389658 -83686514 - Lx9 LINE L1 -15 7629 7159 6 893 918 275 110 50 chr9 40389670 40390087 -83686085 - Lx9 LINE L1 -1083 6561 6120 6 893 729 139 162 19 chr9 40390207 40390361 -83685811 + ORR1B2 LTR MaLR 1 176 -191 6 893 740 261 34 133 chr9 40390732 40391055 -83685117 + B4 SINE B4 2 292 0 6 893 416 354 33 22 chr9 40391882 40392064 -83684108 + MER5A DNA MER1_type 4 187 -2 6 893 261 357 12 0 chr9 40392349 40392433 -83683739 - MTD LTR MaLR -309 110 26 6 893 368 333 100 80 chr9 40392615 40392915 -83683257 - ORR1E LTR MaLR 0 359 54 6 893 650 246 102 11 chr9 40392958 40393135 -83683037 - MTD LTR MaLR -201 218 26 6 893 853 214 0 0 chr9 40394836 40394981 -83681191 - RSINE1 SINE B4 -18 147 3 6 893 1022 223 5 31 chr9 40395174 40395396 -83680776 - B3 SINE B2 0 216 1 6 893 836 256 64 0 chr9 40396170 40396373 -83679799 - B3 SINE B2 0 216 1 6 893 7543 11 2 0 chr9 40396434 40397254 -83678918 + RLTR13B2 LTR ERVK 1 822 0 6 893 853 154 0 51 chr9 40397256 40397413 -83678759 - B1_Mur1 SINE Alu 0 149 1 7 893 351 150 0 0 chr9 40397420 40397480 -83678692 + (TTA)n Simple_repeat Simple_repeat 1 60 0 7 893 1183 68 0 0 chr9 40397503 40397649 -83678523 + B1_Mus1 SINE Alu 2 147 -1 7 893 486 120 0 0 chr9 40397649 40397724 -83678448 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 893 755 163 23 17 chr9 40397725 40397900 -83678272 + GA-rich Low_complexity Low_complexity 5 180 0 7 893 216 276 137 16 chr9 40398123 40398223 -83677949 + MIR SINE MIR 28 138 -70 7 893 310 303 73 9 chr9 40398383 40398493 -83677679 + Tigger5 DNA MER2_type 16 132 -2274 7 893 1041 289 81 40 chr9 40398520 40399040 -83677132 - Lx9 LINE L1 -1 7643 7103 7 893 323 326 70 0 chr9 40399051 40399137 -83677035 + Tigger5 DNA MER2_type 151 242 -2164 7 893 277 344 8 8 chr9 40399290 40399422 -83676750 - L1MC5 LINE L1 -521 7440 7309 7 893 480 281 177 30 chr9 40399765 40400036 -83676136 + MLT2F LTR ERVL 210 520 -143 7 893 258 290 120 0 chr9 40400148 40400248 -83675924 + RMER12 LTR ERVK 739 850 -472 7 893 671 128 39 0 chr9 40400246 40400348 -83675824 + ORR1B1 LTR MaLR 244 349 -45 7 893 1222 55 0 0 chr9 40400352 40400498 -83675674 + B1_Mus2 SINE Alu 2 147 0 7 893 306 0 0 0 chr9 40400498 40400532 -83675640 + (A)n Simple_repeat Simple_repeat 1 34 0 7 893 1065 96 161 6 chr9 40400540 40400708 -83675464 + B2_Mm2 SINE B2 2 195 0 7 893 321 87 43 0 chr9 40400752 40400798 -83675374 + ORR1A4 LTR MaLR 274 321 -8 7 893 342 0 0 0 chr9 40400804 40400842 -83675330 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 893 270 0 0 0 chr9 40400842 40400871 -83675301 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 893 777 250 105 51 chr9 40400876 40401133 -83675039 - B4 SINE B4 -20 272 2 7 893 383 198 12 36 chr9 40401167 40401251 -83674921 - PB1D10 SINE Alu -31 86 5 7 893 2063 171 3 26 chr9 40401509 40401858 -83674314 - MTC LTR MaLR -2 419 79 7 893 747 161 41 14 chr9 40401863 40402008 -83674164 - B1_Mur4 SINE Alu -1 149 1 7 893 565 186 0 0 chr9 40402008 40402103 -83674069 - MTC LTR MaLR -326 95 1 7 893 25 65 0 0 chr9 40402173 40402219 -83673953 + AT_rich Low_complexity Low_complexity 1 46 0 7 893 1017 304 90 61 chr9 40402277 40402585 -83673587 + L1MB1 LINE L1 5455 5782 -386 7 893 228 35 0 0 chr9 40402585 40402614 -83673558 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 893 1017 304 90 61 chr9 40402614 40402991 -83673181 + L1MB1 LINE L1 5783 6159 -9 7 893 495 257 54 103 chr9 40403088 40403292 -83672880 + B3A SINE B2 5 198 0 7 893 24 53 0 0 chr9 40403335 40403373 -83672799 + AT_rich Low_complexity Low_complexity 1 38 0 7 893 525 310 149 27 chr9 40403431 40403693 -83672479 + MLT1F1 LTR MaLR 11 304 -265 7 893 859 280 0 32 chr9 40403700 40403918 -83672254 + B3 SINE B2 1 211 -5 7 893 689 319 29 14 chr9 40403933 40404143 -83672029 + MLT1F1 LTR MaLR 357 569 0 7 893 700 290 18 23 chr9 40404230 40404449 -83671723 + ID_B1 SINE B4 1 218 -6 7 893 365 310 95 15 chr9 40404491 40404691 -83671481 - L1MC4a LINE L1 -1968 5914 5699 7 893 955 219 42 37 chr9 40405519 40405733 -83670439 + B3 SINE B2 2 216 0 7 893 817 205 104 93 chr9 40405767 40405950 -83670222 - B3A SINE B2 -10 185 1 7 893 1147 56 14 14 chr9 40406028 40406174 -83669998 + B1_Mur4 SINE Alu 5 150 0 7 893 282 29 0 0 chr9 40406178 40406213 -83669959 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 7 893 1523 204 79 31 chr9 40407337 40407692 -83668480 - ORR1D1 LTR MaLR 0 374 3 7 893 622 282 34 0 chr9 40407769 40407918 -83668254 - MER34A LTR ERV1 -415 156 3 7 893 441 0 0 0 chr9 40407945 40407994 -83668178 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 7 893 572 165 73 9 chr9 40408001 40408111 -83668061 - B1_Mur1 SINE Alu -21 128 12 7 893 486 370 59 5 chr9 40408115 40408335 -83667837 - MLT1A0 LTR MaLR -119 246 15 7 893 404 326 67 58 chr9 40408641 40408849 -83667323 + MLT1F LTR MaLR 12 221 -327 7 893 1165 264 96 45 chr9 40408871 40409235 -83666937 + MTD LTR MaLR 10 405 -14 7 893 283 324 0 39 chr9 40410206 40410283 -83665889 + ID4_ SINE ID 1 74 -9 7 893 293 322 65 27 chr9 40410458 40410677 -83665495 + B4A SINE B4 1 274 -18 7 893 611 60 12 0 chr9 40410717 40410801 -83665371 + (CA)n Simple_repeat Simple_repeat 1 85 0 7 893 1386 76 16 0 chr9 40410872 40411057 -83665115 + B2_Mm2 SINE B2 6 193 -2 7 893 1266 227 75 60 chr9 40411079 40411426 -83664746 + MTD LTR MaLR 67 418 -1 7 893 362 172 0 0 chr9 40411951 40412009 -83664163 - HAL1-3A_ME LINE L1 -825 2033 1976 7 893 222 304 0 0 chr9 40412009 40412065 -83664107 + (CG)n Simple_repeat Simple_repeat 2 57 0 7 893 293 309 169 65 chr9 40412117 40412425 -83663747 - LTR16A LTR ERVL -10 441 102 7 893 201 366 29 10 chr9 40412522 40412624 -83663548 + L2a LINE L2 3319 3422 -4 7 893 233 283 0 0 chr9 40413026 40413086 -83663086 + CT-rich Low_complexity Low_complexity 2 61 0 7 893 742 230 0 38 chr9 40413218 40413376 -83662796 - RSINE1 SINE B4 -12 153 2 7 893 581 301 18 18 chr9 40413837 40414006 -83662166 + B4A SINE B4 10 178 -114 7 893 455 87 14 0 chr9 40414007 40414076 -83662096 + (GGGAGA)n Simple_repeat Simple_repeat 1 70 0 7 893 257 342 0 0 chr9 40414737 40414810 -83661362 + ID SINE ID 9 81 -143 7 893 716 256 12 6 chr9 40415332 40415493 -83660679 - RSINE1 SINE B4 0 165 4 7 893 809 112 9 0 chr9 40415534 40415650 -83660522 + B1_Mus1 SINE Alu 31 147 -1 7 893 682 220 55 72 chr9 40415695 40415876 -83660296 - B3A SINE B2 -19 179 2 7 893 203 194 0 31 chr9 40416239 40416303 -83659869 + (CGTG)n Simple_repeat Simple_repeat 2 63 0 7 893 713 259 11 44 chr9 40416303 40416485 -83659687 - B4A SINE B4 -116 176 1 7 893 280 312 10 0 chr9 40416595 40416691 -83659481 - L1MC LINE L1 -2084 5798 5702 7 893 245 264 0 0 chr9 40416738 40416791 -83659381 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 893 690 13 0 0 chr9 40417468 40417547 -83658625 + (TTTCC)n Simple_repeat Simple_repeat 3 81 0 7 893 1033 83 8 0 chr9 40417748 40417881 -83658291 + B1_Mus2 SINE Alu 1 134 -13 7 893 225 0 0 0 chr9 40417881 40417906 -83658266 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7 893 707 183 163 12 chr9 40417941 40418107 -83658065 + B3 SINE B2 1 191 -25 7 893 591 62 0 0 chr9 40418109 40418189 -83657983 + (CATA)n Simple_repeat Simple_repeat 1 80 0 7 893 372 307 116 34 chr9 40419223 40419352 -83656820 - Lx6 LINE L1 0 7460 7325 7 893 186 43 0 0 chr9 40419352 40419375 -83656797 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7 893 372 307 116 34 chr9 40419375 40419478 -83656694 - Lx6 LINE L1 -136 7324 7209 7 893 1244 248 138 12 chr9 40419480 40419884 -83656288 - Lx7 LINE L1 -365 7331 6877 7 893 795 269 204 23 chr9 40419972 40420043 -83656129 + ORR1E LTR MaLR 1 68 -291 7 893 1939 137 218 16 chr9 40420043 40420414 -83655758 - RLTR41 LTR ERV1 0 446 1 7 893 795 269 204 23 chr9 40420414 40420646 -83655526 + ORR1E LTR MaLR 69 359 0 7 893 516 16 0 0 chr9 40420803 40420864 -83655308 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 893 464 350 12 0 chr9 40421906 40422066 -83654106 + RSINE1 SINE B4 4 165 0 7 893 529 279 39 0 chr9 40422881 40423010 -83653162 + MTEa LTR MaLR 28 161 -218 7 893 705 289 154 15 chr9 40423010 40423270 -83652902 + MTE2b LTR MaLR 77 372 -7 7 893 978 267 48 8 chr9 40423326 40423594 -83652578 + B4A SINE B4 2 280 -12 7 893 23 54 0 0 chr9 40425054 40425091 -83651081 + AT_rich Low_complexity Low_complexity 1 37 0 7 893 329 304 96 39 chr9 40425916 40426094 -83650078 + MER21B LTR ERV1 6 193 -670 7 893 325 363 59 70 chr9 40426247 40426300 -83649872 + MER21B LTR ERV1 427 484 -379 7 893 1377 91 38 0 chr9 40426300 40426486 -83649686 + B2_Mm2 SINE B2 1 193 -2 7 893 334 298 54 46 chr9 40426486 40426562 -83649610 + MER77 LTR ERVL 525 597 -10 7 893 325 363 59 70 chr9 40426562 40426719 -83649453 + MER21B LTR ERV1 485 709 -154 7 893 1427 225 79 118 chr9 40426880 40427424 -83648748 - RLTR24 LTR ERV1 -6 523 1 7 893 193 302 61 20 chr9 40427436 40427534 -83648638 + MIR SINE MIR 118 219 -43 7 893 1040 204 9 116 chr9 40427542 40427758 -83648414 + B3 SINE B2 2 194 -1 7 893 227 140 20 0 chr9 40427791 40427841 -83648331 + T-rich Low_complexity Low_complexity 3 53 0 7 893 1202 48 14 0 chr9 40427842 40427987 -83648185 - B1_Mm SINE Alu 0 147 1 7 893 204 40 0 0 chr9 40428010 40428035 -83648137 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 893 1116 205 9 0 chr9 40428088 40428298 -83647874 + B3 SINE B2 1 212 -4 7 893 1097 64 7 7 chr9 40428352 40428484 -83647688 + B1_Mm SINE Alu 2 134 -13 7 893 287 25 0 24 chr9 40428484 40428525 -83647647 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 7 893 186 43 0 0 chr9 40428535 40428558 -83647614 + (GAAAA)n Simple_repeat Simple_repeat 5 27 0 7 893 362 187 52 62 chr9 40428890 40428959 -83647213 + ORR1E LTR MaLR 39 106 -253 7 893 1115 83 0 31 chr9 40428959 40429121 -83647051 + B2_Mm2 SINE B2 1 157 -38 7 893 1620 39 0 0 chr9 40429123 40429596 -83646576 + (GGAGAA)n Simple_repeat Simple_repeat 1 473 0 7 893 3004 65 25 20 chr9 40430061 40430466 -83645706 + MTB_Mm LTR MaLR 1 407 0 7 893 240 35 0 0 chr9 40430758 40430787 -83645385 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 893 298 261 145 40 chr9 40431397 40431521 -83644651 - MLT1B LTR MaLR -253 137 1 7 893 309 307 87 82 chr9 40431776 40431982 -83644190 + B4A SINE B4 1 207 -85 7 893 2952 141 4 38 chr9 40432020 40432551 -83643621 + RLTR28 LTR ERVL 1 513 -11 7 893 345 82 0 0 chr9 40432579 40432628 -83643544 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 893 368 274 94 132 chr9 40433515 40433750 -83642422 - MLT1B LTR MaLR -24 366 141 8 893 435 247 20 10 chr9 40434091 40434189 -83641983 + PB1D10 SINE Alu 13 111 -6 8 893 745 168 0 0 chr9 40434214 40434327 -83641845 + B3 SINE B2 6 118 -98 8 893 264 59 0 0 chr9 40434331 40434365 -83641807 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 8 893 1074 84 75 53 chr9 40435519 40435707 -83640465 - B2_Mm2 SINE B2 -3 192 1 8 893 869 174 0 45 chr9 40435738 40435894 -83640278 - B1_Mur1 SINE Alu 0 149 1 8 893 255 330 10 0 chr9 40436987 40437084 -83639088 - MER5A DNA MER1_type -64 125 28 8 893 1159 49 14 0 chr9 40437164 40437307 -83638865 + B1_Mus2 SINE Alu 3 147 0 8 893 1082 99 0 6 chr9 40437314 40437477 -83638695 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 8 893 381 247 12 12 chr9 40438505 40438591 -83637581 + PB1D10 SINE Alu 18 103 -14 8 893 443 71 0 0 chr9 40439293 40439349 -83636823 + B2_Mm2 SINE B2 2 57 -138 8 893 425 172 151 25 chr9 40439346 40439465 -83636707 + MTE2b LTR MaLR 219 352 -27 8 893 1378 62 23 0 chr9 40440005 40440181 -83635991 + B2_Mm2 SINE B2 3 182 -13 8 893 347 96 0 19 chr9 40440215 40440268 -83635904 + B2_Mm2 SINE B2 50 101 -94 8 893 225 65 0 0 chr9 40440294 40440325 -83635847 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 8 893 1190 48 0 14 chr9 40440391 40440539 -83635633 + B1_Mus2 SINE Alu 2 147 0 8 893 584 209 15 44 chr9 40440856 40440880 -83635292 + ORR1D2 LTR MaLR 1 24 -346 8 893 180 0 0 0 chr9 40440880 40440900 -83635272 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 8 893 584 214 27 71 chr9 40440900 40441046 -83635126 + ORR1D2 LTR MaLR 21 156 -228 8 893 1365 85 6 0 chr9 40441047 40441223 -83634949 + B2_Mm1t SINE B2 3 179 -14 8 893 337 97 14 14 chr9 40441248 40441321 -83634851 + (TTTG)n Simple_repeat Simple_repeat 1 73 0 8 893 1205 62 0 0 chr9 40441337 40441483 -83634689 - B1_Mus2 SINE Alu 0 147 2 8 893 1253 84 67 0 chr9 40441526 40441704 -83634468 + B2_Mm2 SINE B2 2 191 -4 8 893 742 242 72 17 chr9 40441717 40441898 -83634274 + ORR1D2 LTR MaLR 180 370 0 8 893 1586 210 48 12 chr9 40442139 40442472 -83633700 + MTD LTR MaLR 4 348 -71 8 893 672 147 86 0 chr9 40442471 40442587 -83633585 + B1_Mur4 SINE Alu 11 136 -14 8 893 318 196 19 2 chr9 40442608 40442672 -83633500 + MTD LTR MaLR 354 421 0 8 893 302 194 164 0 chr9 40443318 40443385 -83632787 - 5S rRNA rRNA -36 85 8 8 893 189 0 0 0 chr9 40443448 40443469 -83632703 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 8 893 639 200 82 0 chr9 40443489 40443624 -83632548 - B1_Mm SINE Alu 0 147 2 8 893 580 61 0 12 chr9 40444123 40444197 -83631975 + B1_Mus2 SINE Alu 65 138 -9 8 893 252 0 0 0 chr9 40444197 40444225 -83631947 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 8 893 262 242 135 10 chr9 40444566 40444662 -83631510 + PB1D9 SINE Alu 13 120 0 8 893 257 0 30 0 chr9 40445009 40445042 -83631130 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 8 893 892 255 5 14 chr9 40445295 40445502 -83630670 - B3 SINE B2 -11 205 1 8 893 759 287 64 39 chr9 40445811 40446094 -83630078 + B4 SINE B4 2 291 -1 8 893 216 67 0 0 chr9 40446101 40446131 -83630041 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 893 224 30 30 0 chr9 40446130 40446163 -83630009 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 8 893 267 333 88 15 chr9 40446886 40447023 -83629149 - MLT1A LTR MaLR -1 373 227 8 893 1110 79 0 0 chr9 40447224 40447363 -83628809 + B1_Mus1 SINE Alu 2 140 -8 8 893 216 0 0 0 chr9 40447363 40447387 -83628785 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 8 893 231 360 151 38 chr9 40447574 40447733 -83628439 - B4A SINE B4 -25 267 91 8 893 414 322 14 7 chr9 40448420 40448564 -83627608 + ID_B1 SINE B4 6 150 -74 8 893 1060 162 120 0 chr9 40448570 40448761 -83627411 + B3 SINE B2 2 215 -1 8 893 1023 244 19 0 chr9 40448786 40448991 -83627181 + B3 SINE B2 3 211 -5 8 893 281 241 17 0 chr9 40449016 40449074 -83627098 + ID_B1 SINE B4 143 201 -23 8 893 291 98 32 16 chr9 40449080 40449142 -83627030 + (TA)n Simple_repeat Simple_repeat 1 63 0 8 893 1089 65 0 18 chr9 40449146 40449317 -83626855 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 8 893 619 124 18 0 chr9 40449426 40449539 -83626633 + (TC)n Simple_repeat Simple_repeat 2 116 0 8 893 830 158 238 6 chr9 40450409 40450581 -83625591 - B3 SINE B2 -3 213 2 8 893 692 23 12 0 chr9 40451470 40451556 -83624616 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 8 893 380 346 81 78 chr9 40451703 40452035 -83624137 - LTR31 LTR ERV1 -16 603 271 8 893 905 98 91 0 chr9 40452325 40452457 -83623715 - B1_Mur4 SINE Alu -2 148 5 8 893 1241 155 187 37 chr9 40452457 40452805 -83623367 + RLTR9E LTR ERVK 10 409 0 8 893 621 256 83 6 chr9 40453122 40453291 -83622881 + B3A SINE B2 1 182 -16 8 893 851 255 5 33 chr9 40454011 40454222 -83621950 + B3 SINE B2 3 207 -9 8 893 180 0 0 0 chr9 40454222 40454242 -83621930 + (TA)n Simple_repeat Simple_repeat 1 20 0 8 893 372 119 185 87 chr9 40454357 40454368 -83621804 - B1_Mus2 SINE Alu -4 143 136 8 893 558 0 0 0 chr9 40454368 40454430 -83621742 + (TTTTA)n Simple_repeat Simple_repeat 2 63 0 8 893 372 119 185 87 chr9 40454430 40454510 -83621662 - B1_Mus2 SINE Alu -12 135 43 8 893 1071 118 0 53 chr9 40454787 40454957 -83621215 + B2_Mm2 SINE B2 1 161 -34 8 893 405 0 0 0 chr9 40454957 40455002 -83621170 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 8 893 825 60 0 0 chr9 40455084 40455200 -83620972 + (TG)n Simple_repeat Simple_repeat 1 116 0 8 893 414 0 0 0 chr9 40456163 40456209 -83619963 + (GTTTG)n Simple_repeat Simple_repeat 2 47 0 8 893 1114 80 0 0 chr9 40456209 40456347 -83619825 - B1_Mus2 SINE Alu -9 138 1 8 893 342 312 99 25 chr9 40456492 40456701 -83619471 - MLT1B LTR MaLR -17 373 130 8 893 495 69 0 0 chr9 40456754 40456826 -83619346 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 8 893 658 252 13 13 chr9 40456849 40457002 -83619170 - ID_B1 SINE B4 -52 172 20 8 893 292 230 52 39 chr9 40456939 40457016 -83619156 - BC1_Mm scRNA scRNA -71 81 4 8 893 360 0 0 0 chr9 40457328 40457368 -83618804 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 8 893 294 267 13 13 chr9 40457460 40457536 -83618636 + ID4 SINE ID 2 77 -6 8 893 194 323 37 86 chr9 40457627 40457871 -83618301 - L2c LINE L2 -230 3157 2926 8 893 267 103 0 0 chr9 40458081 40458120 -83618052 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 8 893 1183 43 0 0 chr9 40460106 40460245 -83615927 + B1_Mus2 SINE Alu 3 141 -6 8 893 495 0 0 0 chr9 40460247 40460302 -83615870 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 8 893 429 0 49 0 chr9 40460330 40460391 -83615781 + (GTTTG)n Simple_repeat Simple_repeat 2 65 0 8 893 846 143 23 0 chr9 40460392 40460525 -83615647 - B1_Mus1 SINE Alu -12 136 1 8 893 2224 126 49 81 chr9 40460581 40461191 -83614981 + RMER17A LTR ERVK 1 807 -2 8 893 416 182 11 0 chr9 40461834 40461922 -83614250 + (TGAA)n Simple_repeat Simple_repeat 1 89 0 8 893 1193 42 0 0 chr9 40462217 40462360 -83613812 - B1_Mm SINE Alu -4 143 1 8 893 183 42 0 0 chr9 40462362 40462386 -83613786 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 893 654 167 93 86 chr9 40462426 40462577 -83613595 - RMER5 LTR ERV1 -367 167 16 8 893 441 0 0 0 chr9 40462598 40462647 -83613525 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 893 279 0 0 0 chr9 40462648 40462679 -83613493 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 893 383 152 109 50 chr9 40462679 40462817 -83613355 + RMER5 LTR ERV1 322 521 -13 8 893 222 118 0 0 chr9 40462817 40462851 -83613321 + (CTG)n Simple_repeat Simple_repeat 1 34 0 8 893 383 174 28 93 chr9 40462851 40462867 -83613305 + RMER5 LTR ERV1 522 534 0 8 893 233 331 21 78 chr9 40462893 40463034 -83613138 + ID_B1 SINE B4 91 223 -1 8 893 237 33 0 0 chr9 40463205 40463235 -83612937 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8 893 1100 138 26 31 chr9 40464516 40464710 -83611462 + B2_Mm2 SINE B2 1 193 -2 8 893 791 190 173 0 chr9 40464783 40464962 -83611210 - B3 SINE B2 -5 211 2 8 893 988 166 17 22 chr9 40464971 40464985 -83611187 - B2_Mm1t SINE B2 -15 178 165 8 893 423 0 0 0 chr9 40464985 40465032 -83611140 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 893 1134 97 0 25 chr9 40465032 40465196 -83610976 - B2_Mm2 SINE B2 -29 164 1 8 893 554 257 24 129 chr9 40465276 40465446 -83610726 + RSINE1 SINE B4 14 165 0 8 893 413 258 15 0 chr9 40465588 40465679 -83610493 + ID_B1 SINE B4 75 164 -60 8 893 514 204 25 58 chr9 40465705 40465825 -83610347 - PB1D9 SINE Alu -1 119 4 8 893 1446 12 0 0 chr9 40465835 40466003 -83610169 + (GTTTG)n Simple_repeat Simple_repeat 2 169 0 8 893 714 225 56 6 chr9 40466003 40466151 -83610021 - B4 SINE B4 -75 217 61 8 893 558 268 58 0 chr9 40466151 40466289 -83609883 - RSINE1 SINE B4 -17 148 3 8 893 194 125 0 20 chr9 40466535 40466584 -83609588 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 8 893 1241 41 0 0 chr9 40466585 40466732 -83609440 - B1_Mus2 SINE Alu 0 147 1 8 893 276 246 0 0 chr9 40466876 40467014 -83609158 + CT-rich Low_complexity Low_complexity 2 139 0 8 893 492 252 10 0 chr9 40467024 40467127 -83609045 - ID_B1 SINE B4 -8 216 113 8 893 322 305 0 31 chr9 40468351 40468449 -83607723 + PB1D10 SINE Alu 22 116 -1 8 893 4934 140 62 0 chr9 40468612 40469413 -83606759 + RLTR25A LTR ERVK 5 855 -248 8 893 298 181 42 0 chr9 40469404 40469476 -83606696 + RLTR25A LTR ERVK 1029 1103 0 8 893 1507 183 51 36 chr9 40469476 40469805 -83606367 + ORR1B2 LTR MaLR 26 359 -8 8 893 371 148 0 16 chr9 40470506 40470568 -83605604 - B1_Mur1 SINE Alu -1 148 88 9 893 430 252 35 28 chr9 40470569 40470712 -83605460 - RLTR23 LTR ERV1 0 430 287 9 893 1185 55 7 0 chr9 40471048 40471193 -83604979 - B1_Mus2 SINE Alu -1 146 1 9 893 418 242 22 11 chr9 40471261 40471353 -83604819 - B1_Mur3 SINE Alu -56 93 1 9 893 883 240 60 68 chr9 40471456 40471706 -83604466 - MTEb LTR MaLR -3 376 129 9 893 740 161 29 21 chr9 40471896 40472036 -83604136 - B1_Mur4 SINE Alu -9 141 1 9 893 182 191 21 0 chr9 40472563 40472610 -83603562 + CT-rich Low_complexity Low_complexity 3 50 0 9 893 519 17 0 0 chr9 40472692 40472752 -83603420 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 893 256 216 0 0 chr9 40472752 40472803 -83603369 - B4 SINE B4 -239 53 3 9 893 4391 217 49 49 chr9 40473851 40473995 -83602177 + Lx7 LINE L1 6610 6762 -934 9 893 3013 66 43 0 chr9 40473995 40474389 -83601783 + RLTR10A LTR ERVK 1 411 0 9 893 4391 217 49 49 chr9 40474389 40475331 -83600841 + Lx7 LINE L1 6763 7696 0 9 893 590 217 23 0 chr9 40475433 40475562 -83600610 + B1_Mur3 SINE Alu 3 134 -15 9 893 381 188 0 0 chr9 40475587 40475667 -83600505 + GA-rich Low_complexity Low_complexity 2 81 0 9 893 301 316 0 0 chr9 40476034 40476113 -83600059 + ID_B1 SINE B4 107 185 -39 9 893 1195 122 16 0 chr9 40476114 40476303 -83599869 + B2_Mm1t SINE B2 2 193 0 9 893 555 157 0 0 chr9 40476357 40476465 -83599707 + (ATG)n Simple_repeat Simple_repeat 2 109 0 9 893 351 316 68 43 chr9 40476528 40476690 -83599482 + B4A SINE B4 127 292 0 9 893 378 178 38 34 chr9 40476703 40477028 -83599144 + (CA)n Simple_repeat Simple_repeat 1 326 0 9 893 297 352 11 28 chr9 40477459 40477640 -83598532 + GA-rich Low_complexity Low_complexity 3 180 0 9 893 363 203 56 175 chr9 40477736 40477879 -83598293 + B1F SINE Alu 21 146 -3 9 893 1773 114 41 0 chr9 40477889 40478179 -83597993 + L1_Mur2 LINE L1 5056 5357 -520 9 893 3492 95 2 12 chr9 40478179 40478659 -83597513 + MT2C_Mm LTR ERVL 1 475 0 9 893 325 305 76 62 chr9 40479252 40479476 -83596696 - ORSL-2b DNA Tip100 -201 307 81 9 893 216 313 140 85 chr9 40480231 40480395 -83595777 - MIRb SINE MIR -49 219 47 9 893 715 269 9 84 chr9 40480426 40480653 -83595519 + ID_B1 SINE B4 2 211 -13 9 893 987 106 0 0 chr9 40480691 40480823 -83595349 - B1_Mus1 SINE Alu 0 148 17 9 893 860 164 20 7 chr9 40480867 40481014 -83595158 + B1_Mur4 SINE Alu 2 150 0 9 893 577 303 64 82 chr9 40481046 40481265 -83594907 - ID_B1 SINE B4 -8 216 2 9 893 905 302 49 0 chr9 40481273 40481384 -83594788 - L1MB3 LINE L1 -56 6127 6013 9 893 1269 220 92 34 chr9 40481384 40481742 -83594430 - MTEa LTR MaLR 0 379 1 9 893 905 302 49 0 chr9 40481742 40481954 -83594218 - L1MB3 LINE L1 -171 6012 5789 9 893 412 250 209 16 chr9 40482076 40482320 -83593852 - L1MB3 LINE L1 -366 5802 5512 9 893 195 100 0 0 chr9 40482334 40482364 -83593808 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 893 228 244 107 61 chr9 40484686 40484843 -83591329 + MIRm SINE MIR 7 169 -39 9 893 968 108 58 0 chr9 40485019 40485158 -83591014 - B1_Mus1 SINE Alu 0 148 2 9 893 286 198 196 11 chr9 40485200 40485292 -83590880 - PB1D7 SINE Alu -7 113 5 9 893 663 85 6 0 chr9 40485294 40485400 -83590772 - B1_Mm SINE Alu -9 111 2 9 893 625 203 71 14 chr9 40485518 40485658 -83590514 - B1_Mus1 SINE Alu 0 148 1 9 893 865 110 179 0 chr9 40485940 40486085 -83590087 - B2_Mm1t SINE B2 -12 181 11 9 893 565 227 11 0 chr9 40486255 40486435 -83589737 - MTEb LTR MaLR -73 306 13 9 893 195 250 42 0 chr9 40487129 40487177 -83588995 - MIRm SINE MIR -10 266 217 9 893 1155 37 0 7 chr9 40487891 40488027 -83588145 + B1_Mus1 SINE Alu 2 136 -12 9 893 403 70 14 14 chr9 40488028 40488101 -83588071 + (CAAA)n Simple_repeat Simple_repeat 2 74 0 9 893 324 0 0 0 chr9 40488724 40488760 -83587412 + (TTGG)n Simple_repeat Simple_repeat 1 36 0 9 893 294 342 76 32 chr9 40489109 40489266 -83586906 + ID_B1 SINE B4 61 224 0 9 893 446 307 79 14 chr9 40489128 40489267 -83586905 + B1F2 SINE Alu 1 148 -1 9 893 274 280 115 39 chr9 40489604 40489708 -83586464 - PB1D10 SINE Alu -5 112 1 9 893 213 274 16 16 chr9 40489722 40489785 -83586387 + CT-rich Low_complexity Low_complexity 1 63 0 9 893 683 284 30 15 chr9 40489786 40489986 -83586186 - ID_B1 SINE B4 -4 220 18 9 893 701 235 7 0 chr9 40490023 40490159 -83586013 + ID_B1 SINE B4 84 220 -4 9 893 618 248 0 0 chr9 40491338 40491463 -83584709 + B1_Mur1 SINE Alu 16 140 -9 9 893 732 206 8 0 chr9 40491471 40491832 -83584340 + (CA)n Simple_repeat Simple_repeat 1 364 0 9 893 427 219 15 0 chr9 40491864 40492001 -83584171 + (CA)n Simple_repeat Simple_repeat 2 140 0 9 893 27 0 0 0 chr9 40492024 40492051 -83584121 + AT_rich Low_complexity Low_complexity 1 27 0 9 893 200 347 14 0 chr9 40492095 40492167 -83584005 + MIRb SINE MIR 93 165 -103 9 893 395 224 35 0 chr9 40493166 40493251 -83582921 - B1F SINE Alu -19 130 43 9 893 239 303 13 0 chr9 40493483 40493559 -83582613 + GA-rich Low_complexity Low_complexity 4 80 0 9 893 468 158 24 12 chr9 40493590 40493673 -83582499 + B1_Mur1 SINE Alu 53 136 -13 9 893 477 0 0 0 chr9 40493705 40493758 -83582414 + (GA)n Simple_repeat Simple_repeat 1 53 0 9 893 192 127 18 35 chr9 40493990 40494047 -83582125 + GA-rich Low_complexity Low_complexity 4 59 0 9 893 234 292 0 0 chr9 40494877 40494942 -83581230 + G-rich Low_complexity Low_complexity 1 65 0 9 893 253 340 50 0 chr9 40496104 40496204 -83579968 - MIR SINE MIR -118 144 40 9 893 652 234 80 45 chr9 40496403 40496604 -83579568 - B3 SINE B2 -7 209 2 9 893 366 23 0 0 chr9 40496912 40496955 -83579217 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 893 221 135 19 0 chr9 40497097 40497149 -83579023 + A-rich Low_complexity Low_complexity 2 54 0 9 893 615 78 0 0 chr9 40497487 40497577 -83578595 + (TTGG)n Simple_repeat Simple_repeat 2 91 0 9 893 315 0 0 0 chr9 40497975 40498010 -83578162 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 893 306 188 108 15 chr9 40498012 40498077 -83578095 - ID4_ SINE ID -11 72 2 9 893 299 304 129 29 chr9 40498396 40498535 -83577637 - Charlie4z DNA MER1_type -3 164 12 9 893 217 234 132 59 chr9 40498552 40498620 -83577552 - MIRc SINE MIR -116 152 80 9 893 514 324 14 35 chr9 40499392 40499536 -83576636 - RSINE1 SINE B4 -23 142 2 9 893 404 257 25 42 chr9 40499746 40499864 -83576308 - PB1D7 SINE Alu -4 116 1 9 893 342 98 0 0 chr9 40500309 40500360 -83575812 + (CCA)n Simple_repeat Simple_repeat 2 52 0 1 893 251 330 71 50 chr9 40500494 40500676 -83575496 - MIRb SINE MIR -58 210 25 2 893 198 103 0 0 chr9 40501094 40501123 -83575049 + (A)n Simple_repeat Simple_repeat 1 29 0 3 894 360 286 78 94 chr9 40502604 40502859 -83573313 + MIRb SINE MIR 17 267 -1 4 894 477 290 190 4 chr9 40503485 40503717 -83572455 + B4A SINE B4 2 276 -16 5 894 291 320 0 0 chr9 40503754 40503832 -83572340 + G-rich Low_complexity Low_complexity 4 81 0 6 894 201 74 0 0 chr9 40505538 40505565 -83570607 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 7 894 718 264 70 56 chr9 40505640 40505925 -83570247 - B4A SINE B4 -3 289 1 8 894 603 286 12 12 chr9 40506544 40506707 -83569465 - RSINE1 SINE B4 0 165 3 9 894 207 220 0 0 chr9 40507720 40507770 -83568402 + GA-rich Low_complexity Low_complexity 4 53 0 1 894 233 346 75 0 chr9 40508359 40508492 -83567680 + L2a LINE L2 3025 3167 -259 1 894 182 314 155 35 chr9 40508886 40509028 -83567144 - MIRb SINE MIR -56 212 54 1 894 234 0 0 0 chr9 40509028 40509054 -83567118 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 1 894 257 327 41 53 chr9 40509275 40509446 -83566726 - MIRb SINE MIR -20 248 80 1 894 261 0 0 0 chr9 40509530 40509559 -83566613 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 894 1407 74 26 0 chr9 40509574 40509764 -83566408 - B2_Mm2 SINE B2 0 195 1 1 894 358 152 0 122 chr9 40509766 40509856 -83566316 - B1_Mur2 SINE Alu 0 149 71 1 894 621 274 38 85 chr9 40510322 40510557 -83565615 - RMER15 LTR ERVL 0 575 352 1 894 189 0 0 0 chr9 40511043 40511064 -83565108 + (T)n Simple_repeat Simple_repeat 1 21 0 1 894 297 0 0 0 chr9 40511270 40511303 -83564869 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 894 360 0 0 0 chr9 40511303 40511342 -83564830 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 894 966 152 7 0 chr9 40511786 40511931 -83564241 + B1_Mus2 SINE Alu 2 147 0 2 894 861 141 16 0 chr9 40512015 40512143 -83564029 + B3 SINE B2 1 130 -86 2 894 325 237 0 0 chr9 40512301 40512360 -83563812 - MIR SINE MIR -1 261 203 2 894 366 228 0 12 chr9 40513519 40513599 -83562573 + ID4_ SINE ID 3 81 -2 2 894 196 262 66 0 chr9 40513676 40513737 -83562435 + MIR SINE MIR 75 139 -123 2 894 531 242 118 2 chr9 40514058 40514208 -83561964 + B3A SINE B2 1 163 -53 2 894 453 36 0 0 chr9 40514238 40514293 -83561879 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 2 894 877 228 46 88 chr9 40515687 40515887 -83560285 - B4A SINE B4 0 292 99 2 894 3134 64 13 8 chr9 40515887 40516281 -83559891 + MTA_Mm LTR MaLR 1 396 0 3 894 877 229 94 81 chr9 40516281 40516348 -83559824 - B4A SINE B4 -194 98 1 2 894 432 37 0 0 chr9 40517736 40517790 -83558382 + (TGAG)n Simple_repeat Simple_repeat 2 55 0 3 894 717 190 101 28 chr9 40518351 40518530 -83557642 + B3A SINE B2 2 193 -5 3 894 180 0 0 0 chr9 40518530 40518550 -83557622 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 894 474 236 27 0 chr9 40518698 40518808 -83557364 + PB1D9 SINE Alu 1 113 -7 3 894 22 35 0 0 chr9 40518810 40518839 -83557333 + AT_rich Low_complexity Low_complexity 1 29 0 3 894 730 255 12 12 chr9 40518851 40519014 -83557158 + RSINE1 SINE B4 3 165 0 3 894 687 182 149 36 chr9 40519057 40519251 -83556921 + B3 SINE B2 1 216 0 3 894 685 239 136 16 chr9 40519260 40519411 -83556761 + B3 SINE B2 3 167 -49 3 894 213 94 0 0 chr9 40519411 40519443 -83556729 + (CATA)n Simple_repeat Simple_repeat 4 35 0 3 894 685 239 136 16 chr9 40519443 40519482 -83556690 + B3 SINE B2 168 215 -1 3 894 317 250 0 26 chr9 40519532 40519610 -83556562 - MIRb SINE MIR 0 268 193 4 894 225 299 34 22 chr9 40520233 40520322 -83555850 - Lx8 LINE L1 -855 6618 6529 4 894 801 0 0 0 chr9 40520501 40520590 -83555582 + (GA)n Simple_repeat Simple_repeat 1 89 0 4 894 1296 176 130 31 chr9 40520597 40520752 -83555420 + ORR1D1 LTR MaLR 1 163 -211 4 894 560 14 0 14 chr9 40520752 40520822 -83555350 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 894 1296 176 130 31 chr9 40520822 40520876 -83555296 + ORR1D1 LTR MaLR 164 232 -142 4 894 306 73 0 0 chr9 40520876 40520917 -83555255 + (CCTG)n Simple_repeat Simple_repeat 4 44 0 4 894 1296 181 118 31 chr9 40520917 40521047 -83555125 + ORR1D1 LTR MaLR 233 392 -2 4 894 442 365 54 9 chr9 40521048 40521272 -83554900 - Lx8 LINE L1 -202 7271 7038 4 894 234 209 109 173 chr9 40521628 40521738 -83554434 + B1F2 SINE Alu 9 111 -6 4 894 794 39 0 10 chr9 40521880 40521983 -83554189 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 4 894 1132 70 141 0 chr9 40521983 40522139 -83554033 - B2_Mm2 SINE B2 -17 178 1 4 894 23 0 0 0 chr9 40522163 40522186 -83553986 + AT_rich Low_complexity Low_complexity 1 23 0 5 894 203 79 26 0 chr9 40522231 40522269 -83553903 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 5 894 251 354 77 23 chr9 40522340 40522470 -83553702 - MIRc SINE MIR -89 179 43 5 894 857 139 247 6 chr9 40522824 40522998 -83553174 + B3 SINE B2 1 216 0 5 894 490 300 156 0 chr9 40523441 40523601 -83552571 - ID_B1 SINE B4 -36 188 4 5 894 328 226 136 25 chr9 40524065 40524183 -83551989 - MER5A1 DNA MER1_type -34 132 2 5 894 186 133 0 0 chr9 40525943 40525973 -83550199 + (AGGGGG)n Simple_repeat Simple_repeat 5 34 0 5 894 180 111 0 0 chr9 40525976 40526003 -83550169 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 5 894 1212 41 7 0 chr9 40527158 40527304 -83548868 + B1_Mus1 SINE Alu 2 148 0 5 894 531 82 0 0 chr9 40527481 40527554 -83548618 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 5 894 1116 113 0 153 chr9 40527554 40527623 -83548549 - B2_Mm2 SINE B2 0 195 158 6 894 402 21 0 0 chr9 40527623 40527670 -83548502 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 894 1116 113 0 153 chr9 40527670 40527829 -83548343 - B2_Mm2 SINE B2 -38 157 2 6 894 225 83 0 0 chr9 40528266 40528302 -83547870 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 6 894 244 236 35 52 chr9 40528870 40528928 -83547244 + tRNA-Ala-GCY_ tRNA tRNA 6 62 -13 6 894 441 0 0 0 chr9 40528944 40528993 -83547179 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 894 493 212 117 36 chr9 40529566 40529703 -83546469 + B1F SINE Alu 1 148 -1 6 894 703 225 0 0 chr9 40529718 40529838 -83546334 + RSINE1 SINE B4 11 130 -35 6 894 507 73 0 0 chr9 40529842 40529910 -83546262 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 894 744 294 78 55 chr9 40530685 40531232 -83544940 - MLT1B LTR MaLR -3 566 7 6 894 659 316 84 28 chr9 40531288 40531534 -83544638 - MLT1F LTR MaLR -297 272 1 6 894 296 249 125 85 chr9 40531535 40531711 -83544461 + MIRb SINE MIR 19 201 -67 7 894 635 0 13 0 chr9 40532848 40532923 -83543249 + (TC)n Simple_repeat Simple_repeat 2 77 0 7 894 252 0 0 0 chr9 40532923 40532950 -83543222 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 894 525 323 55 20 chr9 40533727 40533929 -83542243 - MLT1B LTR MaLR 0 390 182 7 894 1256 94 22 16 chr9 40534390 40534573 -83541599 + B2_Mm2 SINE B2 3 186 -9 7 894 720 226 0 8 chr9 40535508 40535642 -83540530 - B3 SINE B2 -4 212 80 7 894 2539 141 37 12 chr9 40535772 40536175 -83539997 - MTC LTR MaLR -8 413 1 7 894 288 0 0 0 chr9 40536612 40536644 -83539528 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 7 894 302 336 50 0 chr9 40536657 40536776 -83539396 - MER58B DNA MER1_type 0 341 217 7 894 330 332 110 22 chr9 40536786 40536950 -83539222 + L1ME3A LINE L1 5914 6096 -66 7 894 504 0 0 0 chr9 40537072 40537128 -83539044 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 894 441 0 0 0 chr9 40537128 40537176 -83538996 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 894 764 233 8 7 chr9 40537375 40537576 -83538596 + B3 SINE B2 1 198 0 8 894 253 176 59 0 chr9 40537733 40537784 -83538388 + B3A SINE B2 2 55 -143 8 894 892 152 7 0 chr9 40537869 40538007 -83538165 + B1_Mm SINE Alu 9 147 0 8 894 369 62 0 0 chr9 40538076 40538124 -83538048 + (TAA)n Simple_repeat Simple_repeat 1 48 0 8 894 1418 68 0 6 chr9 40538124 40538302 -83537870 + B2_Mm2 SINE B2 3 179 -16 8 894 967 16 144 30 chr9 40538337 40538469 -83537703 + B1_Mus2 SINE Alu 1 147 0 8 894 213 211 0 0 chr9 40538541 40538579 -83537593 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 8 894 538 252 38 156 chr9 40540078 40540109 -83536063 - B3A SINE B2 -5 193 161 8 894 555 29 0 0 chr9 40540109 40540178 -83535994 + (TG)n Simple_repeat Simple_repeat 2 70 0 9 894 538 343 7 7 chr9 40540178 40540307 -83535865 - B3A SINE B2 -19 179 50 8 894 180 0 0 0 chr9 40540503 40540523 -83535649 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 9 894 23 0 0 0 chr9 40540728 40540751 -83535421 + AT_rich Low_complexity Low_complexity 1 23 0 9 894 396 314 119 6 chr9 40540751 40540911 -83535261 - MER34A LTR ERV1 -11 560 383 9 894 397 289 109 26 chr9 40541137 40541305 -83534867 - MER31B LTR ERV1 -82 403 204 9 894 1229 47 14 0 chr9 40541305 40541453 -83534719 + B1_Mur4 SINE Alu 1 150 0 9 894 397 300 187 49 chr9 40541453 40541627 -83534545 - MER31B LTR ERV1 -263 203 13 9 894 439 243 106 81 chr9 40542032 40542047 -83534125 - RSINE1 SINE B4 0 165 153 9 894 651 84 0 0 chr9 40542047 40542142 -83534030 + (TG)n Simple_repeat Simple_repeat 2 96 0 9 894 439 243 106 81 chr9 40542142 40542287 -83533885 - RSINE1 SINE B4 -13 152 1 9 894 365 247 22 56 chr9 40542277 40542298 -83533874 - ID_B1 SINE B4 -129 95 78 9 894 306 0 0 0 chr9 40542298 40542332 -83533840 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 894 365 247 22 56 chr9 40542332 40542400 -83533772 - ID SINE ID -147 77 9 9 894 470 268 9 35 chr9 40542439 40542555 -83533617 - ID_B1 SINE B4 -17 207 95 1 894 465 321 63 59 chr9 40542595 40542615 -83533557 + Tigger5 DNA MER2_type 17 36 -2370 1 894 195 69 0 0 chr9 40542615 40542644 -83533528 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 1 894 465 321 63 59 chr9 40542644 40542861 -83533311 + Tigger5 DNA MER2_type 37 254 -2152 1 894 296 345 36 18 chr9 40542838 40542950 -83533222 + Tigger5 DNA MER2_type 2292 2405 -1 1 894 2115 99 6 37 chr9 40543002 40543327 -83532845 - L1_Mus3 LINE L1 -1 6637 6323 1 894 523 312 8 0 chr9 40543535 40543663 -83532509 - ID_B1 SINE B4 -10 214 86 1 894 540 0 0 0 chr9 40544281 40544341 -83531831 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 894 884 241 50 47 chr9 40544366 40544644 -83531528 - B4 SINE B4 -13 279 1 1 894 195 42 0 0 chr9 40544904 40544928 -83531244 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 894 1620 3 0 0 chr9 40544934 40545229 -83530943 + (GGGAA)n Simple_repeat Simple_repeat 1 295 0 1 894 200 191 106 0 chr9 40545572 40545619 -83530553 + MIR SINE MIR 16 67 -141 1 894 550 243 70 21 chr9 40545713 40545856 -83530316 + MIRb SINE MIR 49 198 -70 1 894 22 0 0 0 chr9 40545999 40546021 -83530151 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 715 250 5 60 chr9 40546109 40546309 -83529863 - B3A SINE B2 -9 189 1 1 894 577 206 37 0 chr9 40546390 40546497 -83529675 - B1_Mur2 SINE Alu -38 111 1 1 894 365 269 120 56 chr9 40546497 40546524 -83529648 - B4 SINE B4 -77 185 65 1 894 302 315 110 0 chr9 40546680 40546807 -83529365 - L1M4 LINE L1 -2413 3733 3593 1 894 966 197 33 14 chr9 40546825 40547036 -83529136 + B3 SINE B2 2 216 0 1 894 214 277 0 0 chr9 40547243 40547290 -83528882 + ID2 SINE ID 37 83 0 1 894 368 275 45 27 chr9 40547960 40548072 -83528100 + PB1D9 SINE Alu 1 114 -6 1 894 250 226 16 0 chr9 40548079 40548141 -83528031 + GA-rich Low_complexity Low_complexity 3 65 0 1 894 1032 198 69 0 chr9 40548328 40548530 -83527642 - B3 SINE B2 0 216 1 1 894 620 261 14 0 chr9 40548539 40548677 -83527495 - B1_Mur1 SINE Alu -9 140 1 1 894 777 261 22 22 chr9 40548807 40548987 -83527185 - B3A SINE B2 -18 180 1 1 894 365 322 92 26 chr9 40549026 40549179 -83526993 - RSINE1 SINE B4 0 165 3 1 894 1318 106 11 0 chr9 40549188 40549376 -83526796 - B2_Mm1t SINE B2 -3 190 1 1 894 1202 49 7 0 chr9 40549408 40549552 -83526620 + B1_Mus1 SINE Alu 1 145 -3 1 894 459 0 0 0 chr9 40549552 40549603 -83526569 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 894 657 177 44 44 chr9 40549608 40549744 -83526428 + B1_Mur3 SINE Alu 1 136 -13 1 894 672 102 0 0 chr9 40549745 40549843 -83526329 + (GGGA)n Simple_repeat Simple_repeat 2 99 0 1 894 948 190 175 0 chr9 40549936 40550147 -83526025 - ORR1C2 LTR MaLR -3 381 134 1 894 310 145 19 0 chr9 40550162 40550221 -83525951 - ORR1C2 LTR MaLR -334 60 1 1 894 278 227 37 85 chr9 40550291 40550373 -83525799 - B1F SINE Alu -1 148 71 1 894 184 341 58 12 chr9 40550411 40550497 -83525675 + L2a LINE L2 3333 3422 -4 1 894 317 299 50 20 chr9 40550548 40550647 -83525525 + PB1D10 SINE Alu 6 107 -10 1 894 267 31 0 0 chr9 40550647 40550679 -83525493 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 894 549 13 12 25 chr9 40550679 40550759 -83525413 + (CACAC)n Simple_repeat Simple_repeat 1 79 0 1 894 270 0 0 0 chr9 40551093 40551123 -83525049 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 894 357 229 14 0 chr9 40552175 40552245 -83523927 + PB1 SINE Alu 57 127 0 1 894 386 211 0 0 chr9 40552251 40552327 -83523845 + PB1D10 SINE Alu 41 116 -1 1 894 305 358 59 7 chr9 40552701 40552836 -83523336 + HAL1 LINE L1 2 143 -2364 1 894 351 330 29 0 chr9 40553035 40553138 -83523034 + PB1D10 SINE Alu 5 110 -7 1 894 1167 92 252 4 chr9 40553155 40553413 -83522759 - ORR1A3 LTR MaLR 0 326 5 1 894 486 298 8 0 chr9 40553657 40553781 -83522391 + ID_B1 SINE B4 84 208 -16 1 894 267 103 0 0 chr9 40553948 40553987 -83522185 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 1 894 852 144 275 0 chr9 40554127 40554287 -83521885 + B3 SINE B2 1 204 -12 1 894 300 188 266 0 chr9 40554335 40554399 -83521773 - B1_Mur3 SINE Alu -68 81 1 1 894 216 158 0 0 chr9 40554770 40554808 -83521364 + GA-rich Low_complexity Low_complexity 3 40 0 1 894 237 293 24 0 chr9 40555097 40555179 -83520993 + HAL1 LINE L1 1536 1619 -888 1 894 276 30 0 0 chr9 40556175 40556208 -83519964 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 894 327 272 9 9 chr9 40556323 40556431 -83519741 + B1F1 SINE Alu 7 111 -36 1 894 378 0 0 0 chr9 40557347 40557389 -83518783 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 894 551 265 72 14 chr9 40557389 40557527 -83518645 - B3A SINE B2 -50 148 3 1 894 304 22 0 43 chr9 40557543 40557590 -83518582 + (TTGG)n Simple_repeat Simple_repeat 4 48 0 1 894 803 134 20 40 chr9 40557693 40557841 -83518331 - B1_Mur4 SINE Alu -1 149 5 1 894 688 244 34 39 chr9 40558045 40558250 -83517922 + B3 SINE B2 1 204 -12 1 894 485 130 26 0 chr9 40558922 40558999 -83517173 + ID4 SINE ID 5 83 0 1 894 978 252 4 71 chr9 40559310 40559551 -83516621 + B4 SINE B4 1 223 -1 1 894 340 277 27 62 chr9 40560169 40560315 -83515857 - B1F SINE Alu -8 141 1 1 894 361 333 171 46 chr9 40560325 40560847 -83515325 - L3 LINE CR1 -311 4178 3592 1 894 1246 54 0 0 chr9 40561044 40561191 -83514981 + B1_Mm SINE Alu 1 147 0 1 894 647 248 15 0 chr9 40561407 40561544 -83514628 - B1_Mus2 SINE Alu -7 140 2 1 894 4236 91 68 77 chr9 40561590 40562270 -83513902 - RLTR33 LTR ERVK 0 678 5 1 894 342 263 0 13 chr9 40562475 40562552 -83513620 + ID4 SINE ID 2 77 -6 1 894 1193 68 0 0 chr9 40562585 40562732 -83513440 + B1_Mus2 SINE Alu 1 147 0 1 894 200 93 0 44 chr9 40562733 40562778 -83513394 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 1 894 233 298 31 41 chr9 40562836 40562934 -83513238 + CT-rich Low_complexity Low_complexity 3 99 0 1 894 386 322 0 0 chr9 40563359 40563533 -83512639 + (CCCCAG)n Simple_repeat Simple_repeat 1 174 0 1 894 849 143 28 7 chr9 40563790 40563931 -83512241 + B1_Mur3 SINE Alu 5 148 -1 1 894 668 157 149 7 chr9 40564119 40564273 -83511899 - B2_Mm2 SINE B2 -7 188 13 1 894 258 327 0 38 chr9 40564316 40564421 -83511751 - PB1 SINE Alu 0 127 27 1 894 282 242 0 0 chr9 40565746 40565808 -83510364 + G-rich Low_complexity Low_complexity 1 62 0 1 894 1342 65 65 0 chr9 40566493 40566662 -83509510 + B2_Mm2 SINE B2 2 181 -14 1 894 348 169 51 0 chr9 40566826 40566885 -83509287 - B3 SINE B2 -154 62 1 1 894 1480 73 11 0 chr9 40566889 40567080 -83509092 - B2_Mm1t SINE B2 0 193 1 1 894 24 0 0 0 chr9 40567090 40567114 -83509058 + AT_rich Low_complexity Low_complexity 1 24 0 1 894 264 258 16 0 chr9 40567114 40567176 -83508996 - PB1D10 SINE Alu -34 83 21 1 894 312 280 190 0 chr9 40567211 40567311 -83508861 - PB1 SINE Alu -7 120 2 1 894 392 208 7 137 chr9 40567711 40567740 -83508432 + MT2B LTR ERVL 144 154 -447 1 894 784 137 8 0 chr9 40567740 40567864 -83508308 + B1_Mus1 SINE Alu 3 127 -21 1 894 285 100 0 0 chr9 40567864 40567914 -83508258 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 894 245 298 0 161 chr9 40567955 40568012 -83508160 - BC1_Mm scRNA scRNA -43 109 55 1 894 1226 54 0 0 chr9 40568012 40568159 -83508013 + B1_Mus1 SINE Alu 2 148 0 1 894 245 298 0 161 chr9 40568159 40568225 -83507947 - BC1_Mm scRNA scRNA -98 54 6 1 894 759 189 49 0 chr9 40568255 40568398 -83507774 - B1_Mur4 SINE Alu 0 150 1 1 894 276 276 69 30 chr9 40568418 40568549 -83507623 - B1F1 SINE Alu -12 137 2 1 894 495 279 0 0 chr9 40569295 40569399 -83506773 + PB1D10 SINE Alu 11 114 -3 1 894 1226 54 0 0 chr9 40570421 40570568 -83505604 + B1_Mus1 SINE Alu 2 148 0 1 894 679 318 37 28 chr9 40570664 40570881 -83505291 - Tigger5 DNA MER2_type -3 2403 2185 1 894 1238 48 0 7 chr9 40570900 40571048 -83505124 + B1_Mus1 SINE Alu 2 148 0 1 894 293 365 42 48 chr9 40571518 40571685 -83504487 + MER31A LTR ERV1 1 166 -319 1 894 285 299 38 38 chr9 40571788 40571920 -83504252 + MER31A LTR ERV1 351 482 -3 1 894 196 217 202 21 chr9 40572148 40572242 -83503930 - L2a LINE L2 -2 3424 3314 1 894 523 259 56 7 chr9 40572320 40572464 -83503708 + ID_B1 SINE B4 26 176 -48 1 894 712 301 101 66 chr9 40572511 40572888 -83503284 - Tigger7 DNA MER2_type -2020 471 82 1 894 224 297 135 0 chr9 40572955 40573029 -83503143 - PB1D10 SINE Alu -33 84 1 1 894 219 69 0 0 chr9 40573045 40573074 -83503098 + (TTCCC)n Simple_repeat Simple_repeat 3 31 0 1 894 839 168 16 55 chr9 40573076 40573259 -83502913 + B2_Mm2 SINE B2 20 195 0 1 894 651 248 26 13 chr9 40574262 40574413 -83501759 + RSINE1 SINE B4 4 156 -9 1 894 654 239 35 0 chr9 40574694 40574836 -83501336 + RSINE1 SINE B4 6 152 -13 1 894 252 360 37 63 chr9 40574700 40574890 -83501282 + B3A SINE B2 11 195 -3 1 894 345 263 0 13 chr9 40574892 40574969 -83501203 + PB1D10 SINE Alu 3 78 -39 1 894 258 241 19 164 chr9 40575071 40575118 -83501054 + LTR37A LTR ERV1 291 326 -100 1 894 313 285 143 23 chr9 40575118 40575251 -83500921 - B1F2 SINE Alu 0 149 1 1 894 258 241 19 164 chr9 40575251 40575362 -83500810 + LTR37A LTR ERV1 327 426 0 1 894 299 218 116 84 chr9 40575434 40575529 -83500643 - PB1D7 SINE Alu 0 120 23 1 894 1329 101 21 16 chr9 40575750 40575942 -83500230 + B2_Mm2 SINE B2 2 194 -1 2 894 237 178 0 0 chr9 40576472 40576517 -83499655 + CT-rich Low_complexity Low_complexity 2 46 0 2 894 1025 58 71 21 chr9 40576518 40576658 -83499514 - B1_Mm SINE Alu 0 147 1 2 894 602 206 137 98 chr9 40576659 40576842 -83499330 - B3 SINE B2 -2 193 4 2 894 3737 71 6 2 chr9 40576885 40577367 -83498805 - L1_Mus3 LINE L1 -12 6626 6143 2 894 267 173 0 0 chr9 40577508 40577560 -83498612 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 2 894 281 333 88 47 chr9 40577714 40577862 -83498310 + RSINE1 SINE B4 4 157 -8 2 894 1420 80 21 0 chr9 40577887 40578075 -83498097 - B2_Mm2 SINE B2 -3 192 1 2 894 216 97 0 0 chr9 40578315 40578346 -83497826 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 2 894 757 206 0 0 chr9 40578365 40578506 -83497666 - B1_Mus2 SINE Alu -6 141 1 2 894 431 48 0 16 chr9 40578666 40578729 -83497443 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 894 411 190 130 0 chr9 40578969 40579069 -83497103 + B1_Mur1 SINE Alu 2 114 -35 2 894 258 304 115 9 chr9 40578974 40579087 -83497085 + ID_B1 SINE B4 88 212 -12 2 894 519 17 0 0 chr9 40579434 40579494 -83496678 + (GTTTG)n Simple_repeat Simple_repeat 3 62 0 2 894 551 158 233 0 chr9 40579516 40579541 -83496631 - B1_Mur4 SINE Alu -1 149 120 2 894 423 0 0 0 chr9 40579541 40579588 -83496584 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 894 551 158 233 0 chr9 40579588 40579682 -83496490 - B1_Mur4 SINE Alu -31 119 3 2 894 521 238 76 14 chr9 40579870 40580015 -83496157 - RSINE1 SINE B4 -9 156 3 2 894 642 95 0 0 chr9 40580725 40580820 -83495352 + (CGTG)n Simple_repeat Simple_repeat 1 95 0 2 894 1253 214 81 90 chr9 40580899 40581078 -83495094 - MTD LTR MaLR 0 419 226 2 894 749 21 11 0 chr9 40581078 40581173 -83494999 + (TC)n Simple_repeat Simple_repeat 2 97 0 2 894 1253 214 81 90 chr9 40581173 40581216 -83494956 - MTD LTR MaLR -194 225 212 2 894 1131 62 0 14 chr9 40581216 40581363 -83494809 - B1_Mus1 SINE Alu 0 148 4 2 894 1253 214 81 90 chr9 40581363 40581561 -83494611 - MTD LTR MaLR -208 211 2 2 894 428 250 0 98 chr9 40581599 40581732 -83494440 - ID_B1 SINE B4 -19 205 86 2 894 593 216 35 0 chr9 40581764 40581880 -83494292 - ID_B1 SINE B4 -2 222 103 2 894 249 324 74 28 chr9 40582125 40582233 -83493939 - B1F SINE Alu -15 134 22 2 894 216 215 224 30 chr9 40582592 40582659 -83493513 - ID4_ SINE ID -3 80 1 2 894 243 0 0 0 chr9 40582703 40582730 -83493442 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 894 252 86 0 0 chr9 40582757 40582792 -83493380 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 2 894 291 324 19 120 chr9 40582809 40582967 -83493205 + ID_B1 SINE B4 77 218 -6 2 894 1306 88 39 0 chr9 40582976 40583157 -83493015 + B2_Mm2 SINE B2 1 188 -7 2 894 1155 50 0 7 chr9 40583164 40583306 -83492866 + B1_Mm SINE Alu 1 141 -6 2 894 210 71 0 0 chr9 40583309 40583337 -83492835 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 894 227 333 107 0 chr9 40583354 40583438 -83492734 + PB1D10 SINE Alu 2 94 -23 2 894 26 30 0 0 chr9 40583438 40583471 -83492701 + AT_rich Low_complexity Low_complexity 1 33 0 2 894 835 185 0 27 chr9 40583481 40583631 -83492541 + B1_Mus2 SINE Alu 1 146 -1 2 894 240 35 0 0 chr9 40583633 40583662 -83492510 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 894 461 266 55 120 chr9 40583833 40583896 -83492276 - MLT1F1 LTR MaLR -9 560 513 2 894 1074 82 0 46 chr9 40583896 40584049 -83492123 - B1_Mus2 SINE Alu 0 147 2 2 894 1261 98 27 11 chr9 40584057 40584242 -83491930 - B2_Mm2 SINE B2 -7 188 1 2 894 461 266 55 120 chr9 40584242 40584443 -83491729 - MLT1F1 LTR MaLR -65 504 305 2 894 234 116 0 0 chr9 40584455 40584498 -83491674 + (A)n Simple_repeat Simple_repeat 1 43 0 2 894 258 254 0 101 chr9 40584621 40584700 -83491472 - MLT1F1 LTR MaLR -392 168 98 2 894 414 328 0 16 chr9 40584700 40584827 -83491345 + RSINE1 SINE B4 4 128 -37 2 894 723 12 0 0 chr9 40584888 40584972 -83491200 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 2 894 411 273 98 52 chr9 40585006 40585199 -83490973 - LTR37B LTR ERV1 -71 397 196 2 894 257 269 0 43 chr9 40585374 40585433 -83490739 + PB1D10 SINE Alu 49 107 -10 2 894 222 37 0 0 chr9 40585433 40585460 -83490712 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 894 211 375 0 0 chr9 40585531 40585587 -83490585 + B4 SINE B4 92 147 -145 2 894 230 250 0 0 chr9 40585545 40585589 -83490583 - YREP_Mm Unknown Unknown -1516 296 253 2 894 1202 55 0 0 chr9 40585624 40585770 -83490402 + B1_Mm SINE Alu 2 147 0 2 894 1999 9 0 0 chr9 40585825 40586048 -83490124 - L1Md_A LINE L1 -1 6581 6359 2 894 785 115 200 48 chr9 40586259 40586388 -83489784 + B2_Mm2 SINE B2 2 163 -32 2 894 396 59 0 0 chr9 40586388 40586439 -83489733 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2 894 785 115 200 48 chr9 40586439 40586474 -83489698 + B2_Mm2 SINE B2 164 191 -4 2 894 428 229 28 28 chr9 40586753 40586861 -83489311 - PB1D10 SINE Alu 0 117 10 2 894 402 74 0 0 chr9 40586940 40586994 -83489178 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 894 663 200 28 28 chr9 40586999 40587143 -83489029 - B1F SINE Alu 0 149 6 2 894 518 303 30 0 chr9 40587398 40587530 -83488642 + RSINE1 SINE B4 1 136 -29 2 894 338 217 15 142 chr9 40587566 40587700 -83488472 + L1MCa LINE L1 1843 1959 -4549 2 894 213 121 0 0 chr9 40587701 40587734 -83488438 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2 894 811 169 27 27 chr9 40587736 40587882 -83488290 + B1_Mur4 SINE Alu 4 149 -1 2 894 467 264 18 36 chr9 40587895 40588005 -83488167 + B1F2 SINE Alu 1 108 -41 2 894 335 306 168 33 chr9 40588166 40588440 -83487732 + L2 LINE L2 2680 2990 -429 2 894 1558 204 27 166 chr9 40589508 40589991 -83486181 - MTD LTR MaLR 0 419 4 2 894 189 0 0 0 chr9 40592129 40592150 -83484022 + (A)n Simple_repeat Simple_repeat 1 21 0 2 894 239 291 0 0 chr9 40593237 40593323 -83482849 + A-rich Low_complexity Low_complexity 1 86 0 2 894 587 115 0 0 chr9 40593770 40593857 -83482315 - RLTR24 LTR ERV1 -1 528 442 2 894 239 252 123 66 chr9 40594097 40594203 -83481969 + PB1D10 SINE Alu 4 115 -2 2 894 448 258 123 15 chr9 40594249 40594311 -83481861 - ID_B1 SINE B4 -1 223 157 2 894 180 0 0 0 chr9 40594311 40594331 -83481841 + (C)n Simple_repeat Simple_repeat 1 20 0 2 894 448 258 123 15 chr9 40594331 40594398 -83481774 - ID_B1 SINE B4 -68 156 80 2 894 1311 106 6 0 chr9 40594488 40594668 -83481504 + B2_Mm2 SINE B2 1 181 -14 2 894 344 151 13 0 chr9 40594714 40594778 -83481394 + B2_Mm2 SINE B2 46 115 -83 2 894 252 0 0 0 chr9 40594797 40594825 -83481347 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2 894 640 237 19 179 chr9 40594848 40594897 -83481275 + B3 SINE B2 1 46 -170 2 894 1097 70 0 27 chr9 40594897 40595044 -83481128 - B1_Mus2 SINE Alu 0 147 5 2 894 640 237 19 179 chr9 40595044 40595251 -83480921 + B3 SINE B2 47 216 0 2 894 881 129 29 0 chr9 40595259 40595398 -83480774 + B1_Mus2 SINE Alu 1 143 -4 2 894 203 57 0 28 chr9 40595408 40595417 -83480755 + (GAA)n Simple_repeat Simple_repeat 3 11 0 2 894 963 129 0 0 chr9 40595417 40595595 -83480577 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 894 203 57 0 28 chr9 40595595 40595621 -83480551 + (GAA)n Simple_repeat Simple_repeat 3 27 0 2 894 424 327 0 9 chr9 40596060 40596168 -83480004 + B1F SINE Alu 3 109 -40 2 894 984 224 20 5 chr9 40596160 40596357 -83479815 + B3 SINE B2 14 213 -3 2 894 618 250 20 20 chr9 40596357 40596491 -83479681 + B1_Mur2 SINE Alu 3 139 -10 2 894 351 0 0 0 chr9 40596491 40596530 -83479642 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 894 618 250 20 20 chr9 40596530 40596542 -83479630 + B1_Mur2 SINE Alu 140 149 0 2 894 787 82 213 0 chr9 40596547 40596669 -83479503 + B1_Mus1 SINE Alu 1 148 0 2 894 320 117 34 52 chr9 40596672 40596741 -83479431 + B1F SINE Alu 53 149 0 2 894 1295 103 11 0 chr9 40596955 40597139 -83479033 - B2_Mm1t SINE B2 -7 186 1 2 894 2440 35 3 0 chr9 40597147 40597434 -83478738 - L1Md_A LINE L1 -2 6580 6293 2 894 463 237 31 0 chr9 40597515 40597612 -83478560 + B1_Mur1 SINE Alu 42 141 -8 2 894 250 238 138 0 chr9 40597694 40597774 -83478398 + MT2B2 LTR ERVL 151 241 -343 2 894 341 220 120 11 chr9 40597713 40597732 -83478440 + B1F SINE Alu 47 140 -9 2 894 348 197 82 27 chr9 40597732 40597796 -83478376 + ID_B1 SINE B4 146 215 -9 2 894 1170 68 0 7 chr9 40597796 40597943 -83478229 + B1_Mus2 SINE Alu 1 146 -1 2 894 359 123 52 17 chr9 40598022 40598080 -83478092 + RSINE1 SINE B4 8 67 -98 2 894 25 31 0 0 chr9 40598080 40598112 -83478060 + AT_rich Low_complexity Low_complexity 1 32 0 2 894 1029 108 5 112 chr9 40598162 40598349 -83477823 - MT2B LTR ERVL -434 167 1 2 894 366 113 60 75 chr9 40598430 40598497 -83477675 + B3 SINE B2 43 108 -108 2 894 216 0 0 0 chr9 40598544 40598568 -83477604 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 894 869 131 15 0 chr9 40598569 40598699 -83477473 - B1_Mus1 SINE Alu -12 136 5 2 894 399 225 0 0 chr9 40598735 40598806 -83477366 + B1_Mur1 SINE Alu 73 143 -6 2 894 1220 34 0 39 chr9 40598818 40598971 -83477201 + B1_Mm SINE Alu 1 147 0 2 894 198 0 0 0 chr9 40598971 40598993 -83477179 + (A)n Simple_repeat Simple_repeat 1 22 0 2 894 1238 48 0 0 chr9 40599003 40599149 -83477023 + B1_Mm SINE Alu 1 146 -1 2 894 652 212 13 33 chr9 40599411 40599562 -83476610 + B1_Mur1 SINE Alu 1 148 -1 2 894 1113 50 0 28 chr9 40599762 40599906 -83476266 + B1_Mm SINE Alu 1 140 -7 2 894 1059 8 0 0 chr9 40599909 40600029 -83476143 + (GAAA)n Simple_repeat Simple_repeat 2 121 0 3 894 217 269 0 0 chr9 40600217 40600269 -83475903 + C-rich Low_complexity Low_complexity 1 52 0 3 894 448 299 19 0 chr9 40600269 40600376 -83475796 - PB1D7 SINE Alu -11 109 1 3 894 183 42 0 0 chr9 40600428 40600452 -83475720 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 3 894 499 214 54 54 chr9 40600458 40600606 -83475566 - B1_Mur1 SINE Alu 0 149 2 3 894 1098 88 0 20 chr9 40600618 40600769 -83475403 - B1_Mus1 SINE Alu 0 148 1 3 894 562 292 13 13 chr9 40600785 40600934 -83475238 + B1_Mur1 SINE Alu 1 149 0 3 894 1199 61 0 13 chr9 40600941 40601090 -83475082 + B1_Mus2 SINE Alu 1 147 0 3 894 1405 78 5 16 chr9 40601128 40601322 -83474850 + B2_Mm1a SINE B2 2 193 0 3 894 755 43 0 0 chr9 40601349 40601443 -83474729 + B1_Mm SINE Alu 54 147 0 3 894 369 145 0 0 chr9 40601443 40601505 -83474667 + (A)n Simple_repeat Simple_repeat 1 62 0 3 894 249 302 111 50 chr9 40601524 40601555 -83474617 - B2_Mm2 SINE B2 -2 193 2 3 894 479 340 53 20 chr9 40601555 40601705 -83474467 - RSINE1 SINE B4 -8 157 3 3 894 224 245 37 19 chr9 40601723 40601777 -83474395 - ID SINE ID -140 84 30 3 894 508 119 12 23 chr9 40602052 40602138 -83474034 - RLTR41 LTR ERV1 0 446 362 3 894 231 61 0 0 chr9 40602139 40602172 -83474000 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 3 894 612 49 214 10 chr9 40602172 40602275 -83473897 - B1_Mm SINE Alu -2 145 22 3 894 1266 163 195 95 chr9 40602279 40602617 -83473555 - RLTR41 LTR ERV1 -74 372 1 3 894 353 250 56 22 chr9 40602628 40602718 -83473454 + PB1D7 SINE Alu 25 117 -3 3 894 686 244 98 0 chr9 40602725 40602918 -83473254 + B3 SINE B2 3 214 -2 3 894 286 269 40 101 chr9 40603149 40603298 -83472874 + B1F SINE Alu 2 141 -8 3 894 473 263 0 0 chr9 40603646 40603741 -83472431 + B1F1 SINE Alu 16 110 -39 3 894 22 35 0 0 chr9 40604054 40604083 -83472089 + AT_rich Low_complexity Low_complexity 1 29 0 3 894 182 283 100 0 chr9 40604493 40604553 -83471619 + MIR SINE MIR 124 189 -73 3 894 24 0 0 29 chr9 40604802 40604820 -83471352 + AT_rich Low_complexity Low_complexity 1 18 0 3 894 1098 102 114 0 chr9 40604820 40604986 -83471186 - B2_Mm1t SINE B2 -8 185 1 3 894 24 0 0 29 chr9 40604986 40605002 -83471170 + AT_rich Low_complexity Low_complexity 1 16 0 3 894 192 77 0 0 chr9 40605003 40605029 -83471143 + (T)n Simple_repeat Simple_repeat 1 26 0 3 894 1232 54 0 0 chr9 40605029 40605176 -83470996 - B1_Mus2 SINE Alu 0 147 1 3 894 837 140 7 34 chr9 40605177 40605325 -83470847 - B1_Mus1 SINE Alu 0 148 5 3 894 1141 69 6 6 chr9 40605365 40605539 -83470633 + (TTC)n Simple_repeat Simple_repeat 2 175 0 3 894 281 322 11 54 chr9 40605555 40605647 -83470525 - ID_B1 SINE B4 -56 168 81 3 894 257 59 0 0 chr9 40605730 40605764 -83470408 - B1_Mur4 SINE Alu -116 34 1 3 894 21 0 0 0 chr9 40605791 40605812 -83470360 + AT_rich Low_complexity Low_complexity 1 21 0 3 894 429 20 0 0 chr9 40605878 40605928 -83470244 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 894 335 257 0 13 chr9 40605933 40606008 -83470164 - B4 SINE B4 -205 87 14 3 894 504 259 259 14 chr9 40606500 40606794 -83469378 - Lx8 LINE L1 -294 7179 6814 3 894 1097 89 7 0 chr9 40606938 40607084 -83469088 + B1_Mus2 SINE Alu 1 147 0 3 894 241 312 0 107 chr9 40607334 40607456 -83468716 - PB1D7 SINE Alu -1 119 11 3 894 205 232 97 42 chr9 40607686 40607758 -83468414 + MIR SINE MIR 105 180 -82 3 894 21 36 0 0 chr9 40609074 40609102 -83467070 + GC_rich Low_complexity Low_complexity 1 28 0 3 894 208 139 0 0 chr9 40610414 40610450 -83465722 + (T)n Simple_repeat Simple_repeat 1 36 0 3 894 802 11 0 0 chr9 40611665 40611752 -83464420 + U14 snRNA snRNA 1 87 0 3 894 801 11 0 0 chr9 40612077 40612164 -83464008 + U14 snRNA snRNA 1 87 0 3 894 409 121 33 78 chr9 40612830 40612920 -83463252 + U14 snRNA snRNA 1 86 -1 3 894 263 129 271 0 chr9 40613646 40613716 -83462456 + B1_Mus1 SINE Alu 18 106 -42 3 894 296 171 86 0 chr9 40614745 40614815 -83461357 - B1F SINE Alu -73 76 1 3 894 310 297 121 43 chr9 40615159 40615275 -83460897 + ID_B1 SINE B4 71 195 -29 3 894 459 0 0 0 chr9 40616105 40616156 -83460016 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 894 198 0 0 0 chr9 40617312 40617334 -83458838 + (T)n Simple_repeat Simple_repeat 1 22 0 3 894 198 0 0 0 chr9 40617626 40617648 -83458524 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 894 258 336 36 22 chr9 40617793 40617930 -83458242 - L2b LINE L2 -187 3188 3050 3 894 1263 181 0 18 chr9 40618278 40618497 -83457675 - B3 SINE B2 0 216 2 3 894 5067 29 2 2 chr9 40618519 40619104 -83457068 - L1Md_F2 LINE L1 -1 6581 5997 3 894 23 0 0 0 chr9 40619124 40619147 -83457025 + AT_rich Low_complexity Low_complexity 1 23 0 3 894 255 341 90 11 chr9 40619173 40619351 -83456821 + MLT1F1 LTR MaLR 2 193 -376 3 894 315 127 0 0 chr9 40619698 40619761 -83456411 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 894 891 201 0 0 chr9 40619769 40619918 -83456254 - B1_Mur3 SINE Alu 0 149 1 3 894 22 0 0 0 chr9 40619967 40619989 -83456183 + AT_rich Low_complexity Low_complexity 1 22 0 3 894 992 224 28 5 chr9 40620052 40620263 -83455909 - B3 SINE B2 0 216 1 3 894 513 312 0 0 chr9 40620296 40620437 -83455735 - ID_B1 SINE B4 0 224 84 3 894 344 248 116 38 chr9 40620439 40620624 -83455548 - L1MC LINE L1 -1506 4640 4447 3 894 1428 80 16 0 chr9 40620624 40620811 -83455361 - B2_Mm2 SINE B2 -4 191 2 3 894 329 259 120 73 chr9 40620811 40620858 -83455314 - L1MC LINE L1 -1700 4446 4397 3 894 317 309 0 0 chr9 40620876 40620960 -83455212 - PB1D7 SINE Alu -36 84 1 3 894 292 236 179 0 chr9 40620969 40621054 -83455118 - L1MC LINE L1 -1746 4400 4294 3 894 444 105 0 0 chr9 40621054 40621130 -83455042 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 894 292 236 179 0 chr9 40621130 40621167 -83455005 - L1MC LINE L1 -1853 4293 4257 3 894 1064 200 29 0 chr9 40621368 40621578 -83454594 + B3 SINE B2 1 216 0 3 894 1179 62 0 7 chr9 40621710 40621857 -83454315 - B1_Mus2 SINE Alu -1 146 1 3 894 627 155 58 58 chr9 40621861 40621998 -83454174 - ID_B1 SINE B4 -1 223 87 3 894 398 325 30 35 chr9 40622002 40622171 -83454001 - MER20B DNA MER1_type -586 197 30 3 894 1498 55 11 0 chr9 40622436 40622619 -83453553 + B2_Mm1a SINE B2 2 186 -7 3 894 1752 10 0 0 chr9 40622730 40622922 -83453250 + B2_Mm1a SINE B2 1 192 -1 3 894 190 351 14 0 chr9 40622923 40622997 -83453175 - MIR SINE MIR -187 75 1 3 894 2748 157 119 17 chr9 40623158 40623634 -83452538 + RMER15 LTR ERVL 1 508 -67 3 894 468 0 0 0 chr9 40623634 40623686 -83452486 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 894 2748 157 119 17 chr9 40623686 40623729 -83452443 + RMER15 LTR ERVL 509 573 -2 3 894 284 0 0 27 chr9 40624066 40624103 -83452069 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 3 894 818 213 65 45 chr9 40624107 40624470 -83451702 - MTD LTR MaLR -16 403 1 3 894 580 292 30 47 chr9 40624470 40624639 -83451533 + ID_B1 SINE B4 37 202 -22 3 894 1174 62 0 7 chr9 40624648 40624795 -83451377 - B1_Mus1 SINE Alu -1 147 2 3 894 241 264 164 0 chr9 40624798 40624877 -83451295 - ID2 SINE ID -54 98 5 3 894 185 254 0 14 chr9 40624888 40624960 -83451212 + CT-rich Low_complexity Low_complexity 6 76 0 3 894 324 0 0 0 chr9 40624969 40625005 -83451167 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 894 365 126 14 0 chr9 40625022 40625087 -83451085 - B2_Mm2 SINE B2 -82 116 46 3 894 1371 74 11 0 chr9 40625114 40625289 -83450883 - B2_Mm1t SINE B2 -14 179 3 3 894 1446 31 0 102 chr9 40625310 40625525 -83450647 - B2_Mm1a SINE B2 0 193 1 3 894 395 287 73 9 chr9 40626373 40626482 -83449690 - B1_Mus2 SINE Alu -31 116 1 3 894 272 309 113 30 chr9 40626623 40626651 -83449521 - B4 SINE B4 -42 250 175 3 894 395 252 138 9 chr9 40626651 40626767 -83449405 - B1F1 SINE Alu -7 142 12 3 894 272 309 113 30 chr9 40626767 40626814 -83449358 - B4 SINE B4 -42 174 39 3 894 739 186 216 23 chr9 40626814 40626985 -83449187 - B3 SINE B2 -9 207 4 3 894 272 309 113 30 chr9 40626985 40627023 -83449149 - B4 SINE B4 -254 38 2 3 894 257 191 176 0 chr9 40627063 40627131 -83449041 - B1_Mur1 SINE Alu -40 109 30 3 894 181 30 59 29 chr9 40627151 40627185 -83448987 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 894 1375 64 20 36 chr9 40627330 40627365 -83448807 - B2_Mm1a SINE B2 0 193 161 3 894 207 0 0 0 chr9 40627365 40627388 -83448784 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 894 1375 64 20 36 chr9 40627388 40627547 -83448625 - B2_Mm1a SINE B2 -33 160 2 3 894 465 226 0 0 chr9 40627694 40627778 -83448394 - ID_B1 SINE B4 -54 170 87 3 894 389 95 16 0 chr9 40627873 40627936 -83448236 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 894 437 297 58 72 chr9 40627939 40628215 -83447957 - B4 SINE B4 -19 273 2 3 894 287 312 12 0 chr9 40628215 40628287 -83447885 - PB1D10 SINE Alu -42 75 3 3 894 491 191 9 0 chr9 40628443 40628541 -83447631 + CT-rich Low_complexity Low_complexity 13 111 0 3 894 1101 131 0 0 chr9 40628541 40628717 -83447455 + (TCC)n Simple_repeat Simple_repeat 3 178 0 3 894 491 191 9 0 chr9 40628717 40628728 -83447444 + polypyrimidine Low_complexity Low_complexity 2 12 0 3 894 1232 41 7 0 chr9 40628728 40628875 -83447297 - B1_Mus1 SINE Alu 0 148 1 3 894 784 170 0 0 chr9 40629146 40629281 -83446891 + B1_Mur4 SINE Alu 16 150 0 3 894 269 352 102 0 chr9 40629307 40629415 -83446757 + B1F SINE Alu 30 148 -1 4 894 2085 130 37 61 chr9 40630720 40630763 -83445409 - MTB_Mm LTR MaLR -8 399 361 4 894 258 32 0 0 chr9 40630763 40630794 -83445378 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 894 2085 130 37 61 chr9 40630794 40631159 -83445013 - MTB_Mm LTR MaLR -47 360 1 4 894 394 220 101 0 chr9 40631259 40631362 -83444810 - B1F SINE Alu -34 113 1 4 894 396 0 0 0 chr9 40631630 40631674 -83444498 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 894 225 0 0 0 chr9 40631674 40631698 -83444474 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 894 366 280 15 29 chr9 40631713 40631849 -83444323 - RSINE1 SINE B4 -30 135 2 4 894 313 234 283 18 chr9 40631919 40631976 -83444196 - MT2B2 LTR ERVL 0 584 497 4 894 261 0 0 0 chr9 40631976 40632005 -83444167 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 894 313 234 283 18 chr9 40632005 40632060 -83444112 - MT2B2 LTR ERVL -88 496 442 4 111 368 261 75 134 chr9 40632088 40632327 -83443845 - B4A SINE B4 -25 267 43 4 895 1425 64 27 5 chr9 40632704 40632892 -83443280 - B2_Mm1t SINE B2 0 193 2 4 895 303 276 41 0 chr9 40633843 40633941 -83442231 + PB1D7 SINE Alu 1 102 -18 4 895 285 222 41 12 chr9 40634075 40634322 -83441850 + (TA)n Simple_repeat Simple_repeat 1 254 0 4 895 1152 100 0 18 chr9 40634323 40634727 -83441445 + (TG)n Simple_repeat Simple_repeat 1 396 0 4 895 1032 144 37 21 chr9 40634784 40634975 -83441197 - B2_Mm2 SINE B2 -1 194 1 4 895 643 93 9 9 chr9 40635052 40635160 -83441012 - B1_Mur4 SINE Alu 0 150 43 4 895 313 301 144 45 chr9 40635160 40635254 -83440918 - ID_B1 SINE B4 -1 223 2 4 895 289 248 133 0 chr9 40635266 40635371 -83440801 - PB1 SINE Alu -7 120 2 4 895 216 24 73 0 chr9 40636657 40636698 -83439474 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 895 226 253 63 51 chr9 40637311 40637390 -83438782 + MTEb LTR MaLR 294 373 -6 4 895 310 266 106 0 chr9 40637427 40637521 -83438651 + ID_B1 SINE B4 79 182 -42 4 895 284 276 90 20 chr9 40637435 40637524 -83438648 + B1F1 SINE Alu 6 101 -48 4 895 1205 62 0 0 chr9 40637524 40637670 -83438502 + B1_Mus2 SINE Alu 2 147 0 4 895 279 79 0 0 chr9 40637683 40637721 -83438451 + (A)n Simple_repeat Simple_repeat 1 38 0 4 895 347 228 78 42 chr9 40637780 40637796 -83438376 + ID_B1 SINE B4 78 224 0 4 895 609 182 63 0 chr9 40637796 40637922 -83438250 + B1_Mus2 SINE Alu 14 147 0 4 895 311 207 36 12 chr9 40637940 40638023 -83438149 + L1M3 LINE L1 5513 5597 -592 4 895 386 210 36 24 chr9 40638029 40638112 -83438060 + B3 SINE B2 13 96 -120 4 895 28 38 0 19 chr9 40638158 40638189 -83437983 + AT_rich Low_complexity Low_complexity 1 31 0 4 895 1260 34 0 0 chr9 40638189 40638336 -83437836 - B1_Mus2 SINE Alu 0 147 1 4 895 28 38 0 19 chr9 40638336 40638357 -83437815 + AT_rich Low_complexity Low_complexity 1 21 0 4 895 518 216 96 15 chr9 40638373 40638509 -83437663 + RSINE1 SINE B4 3 149 -16 4 895 1361 81 27 0 chr9 40638633 40638819 -83437353 + B2_Mm2 SINE B2 1 191 -4 4 895 707 248 76 64 chr9 40638824 40639152 -83437020 + L1MB7 LINE L1 5735 6066 -118 4 895 209 182 0 0 chr9 40639444 40639477 -83436695 + polypyrimidine Low_complexity Low_complexity 3 35 0 4 895 1207 55 0 14 chr9 40639537 40639675 -83436497 + B1_Mus2 SINE Alu 1 138 -9 4 895 280 0 0 48 chr9 40639675 40639717 -83436455 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 4 895 530 97 10 79 chr9 40639726 40639827 -83436345 - B2_Mm2 SINE B2 -100 95 2 4 895 970 239 46 96 chr9 40639921 40640343 -83435829 + MTE2a LTR MaLR 1 405 -14 4 895 353 260 60 0 chr9 40640471 40640571 -83435601 - ID_B1 SINE B4 -10 214 109 4 895 438 193 0 83 chr9 40640642 40640738 -83435434 + B1F SINE Alu 3 90 -59 4 895 513 275 109 51 chr9 40640782 40641153 -83435019 - L1MC4a LINE L1 -1150 6732 6340 4 895 996 134 34 45 chr9 40641153 40641332 -83434840 - B2_Mm2 SINE B2 -18 177 1 4 895 513 275 109 51 chr9 40641332 40641447 -83434725 - L1MC4a LINE L1 -1543 6339 6218 4 895 720 251 160 19 chr9 40641511 40641767 -83434405 - B4A SINE B4 0 292 1 4 895 333 0 0 0 chr9 40641776 40641813 -83434359 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 4 895 231 200 32 48 chr9 40641868 40641931 -83434241 - B4 SINE B4 -220 72 11 4 895 287 226 16 145 chr9 40641977 40642101 -83434071 + PB1D7 SINE Alu 5 112 -8 4 895 835 284 109 0 chr9 40642128 40642431 -83433741 + Lx8 LINE L1 7133 7468 -5 4 895 300 27 0 0 chr9 40642440 40642477 -83433695 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 895 398 216 26 7 chr9 40643088 40643175 -83432997 - ID_B1 SINE B4 -123 169 82 4 895 658 311 129 42 chr9 40643172 40643599 -83432573 + MLT1E3 LTR MaLR 99 562 -62 4 895 430 204 175 9 chr9 40643612 40643726 -83432446 + B1F1 SINE Alu 10 142 -7 4 895 384 77 0 0 chr9 40643780 40643832 -83432340 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 4 895 1242 95 73 0 chr9 40643832 40644011 -83432161 - B2_Mm1t SINE B2 -1 192 1 4 895 1519 199 63 38 chr9 40644052 40644448 -83431724 + MTD LTR MaLR 2 407 -12 4 895 292 288 0 0 chr9 40644465 40644538 -83431634 - ID_B1 SINE B4 -38 186 114 4 895 766 173 75 0 chr9 40644591 40644724 -83431448 - B1_Mur4 SINE Alu -7 143 1 4 895 979 186 85 5 chr9 40644881 40645081 -83431091 - B3 SINE B2 0 216 1 4 895 396 325 12 30 chr9 40645117 40645282 -83430890 + RSINE1 SINE B4 3 164 -1 4 895 23 0 0 0 chr9 40645493 40645516 -83430656 + AT_rich Low_complexity Low_complexity 1 23 0 4 895 688 139 78 0 chr9 40645520 40645649 -83430523 + B1_Mur4 SINE Alu 2 140 -10 4 895 180 0 0 0 chr9 40645649 40645669 -83430503 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 895 955 107 82 0 chr9 40645673 40645832 -83430340 + B2_Mm2 SINE B2 1 172 -23 4 895 216 0 0 0 chr9 40645860 40645884 -83430288 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 895 1130 303 72 62 chr9 40645984 40646498 -83429674 - MER44B DNA MER2_type 0 550 32 4 895 324 265 177 76 chr9 40647076 40647325 -83428847 + B4A SINE B4 1 274 -18 4 895 256 272 191 19 chr9 40647479 40647584 -83428588 + PB1 SINE Alu 3 125 -2 4 895 2438 55 10 0 chr9 40648527 40648837 -83427335 + L1_Mus3 LINE L1 6317 6629 -9 4 895 485 304 68 6 chr9 40648906 40649068 -83427104 - B4A SINE B4 -115 177 6 4 895 195 129 0 0 chr9 40649130 40649161 -83427011 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 4 895 1099 146 73 0 chr9 40649161 40649339 -83426833 - B2_Mm2 SINE B2 -1 194 4 4 895 477 0 0 0 chr9 40649340 40649393 -83426779 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 4 895 2226 137 7 95 chr9 40649567 40650011 -83426161 + MTB_Mm LTR MaLR 2 406 -1 4 895 186 315 0 0 chr9 40650469 40650523 -83425649 + L2a LINE L2 3357 3410 -16 4 895 204 368 13 0 chr9 40650610 40650686 -83425486 - MIRb SINE MIR -161 107 31 4 895 1070 59 15 0 chr9 40650689 40650824 -83425348 + B1_Mus1 SINE Alu 2 138 -10 4 895 224 0 0 61 chr9 40650824 40650857 -83425315 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 895 662 136 91 25 chr9 40650862 40650983 -83425189 + B1_Mur3 SINE Alu 15 143 -6 4 895 180 152 0 0 chr9 40650983 40651016 -83425156 + A-rich Low_complexity Low_complexity 1 33 0 4 895 1517 245 146 7 chr9 40651116 40651179 -83424993 + Lx8 LINE L1 6625 6687 -786 4 895 3483 30 0 5 chr9 40651179 40651581 -83424591 - MTB LTR MaLR 0 400 1 4 895 1517 245 146 7 chr9 40651581 40651961 -83424211 + Lx8 LINE L1 6688 7130 -343 4 895 396 71 0 0 chr9 40652451 40652507 -83423665 + B2_Mm2 SINE B2 1 56 -139 4 895 396 0 0 0 chr9 40652568 40652612 -83423560 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 895 461 295 91 57 chr9 40652638 40652814 -83423358 + B4A SINE B4 5 186 -106 4 895 1396 66 28 0 chr9 40652955 40653137 -83423035 + B2_Mm1a SINE B2 1 187 -6 4 895 255 276 40 0 chr9 40653198 40653274 -83422898 + ID4 SINE ID 1 79 -4 4 895 600 231 0 0 chr9 40653416 40653537 -83422635 - RSINE1 SINE B4 0 165 45 4 895 228 60 160 0 chr9 40653547 40653597 -83422575 + (CCCCAG)n Simple_repeat Simple_repeat 3 60 0 4 895 884 146 45 101 chr9 40653605 40653803 -83422369 - B2_Mm2 SINE B2 -7 188 2 4 895 293 292 73 32 chr9 40654020 40654144 -83422028 + MIR SINE MIR 111 239 -23 4 895 336 200 0 39 chr9 40655318 40655474 -83420698 + (TG)n Simple_repeat Simple_repeat 1 150 0 4 895 306 261 155 9 chr9 40655497 40655613 -83420559 - RSINE1 SINE B4 0 165 33 4 895 586 229 61 0 chr9 40655878 40656009 -83420163 - RSINE1 SINE B4 -15 150 12 4 895 296 295 0 11 chr9 40656252 40656341 -83419831 + MER2 DNA MER2_type 120 207 -138 4 895 615 243 21 7 chr9 40656341 40656482 -83419690 + B1F SINE Alu 5 147 -2 4 895 1185 42 14 0 chr9 40657156 40657300 -83418872 - B1_Mm SINE Alu 0 147 2 4 895 357 186 0 0 chr9 40657551 40657621 -83418551 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 895 791 176 13 45 chr9 40657647 40657698 -83418474 - B1_Mur4 SINE Alu 0 150 105 4 895 1209 114 54 0 chr9 40657698 40657882 -83418290 - B2_Mm2 SINE B2 -1 194 1 4 895 791 176 13 45 chr9 40657882 40657985 -83418187 - B1_Mur4 SINE Alu -46 104 1 4 895 1967 77 0 19 chr9 40658119 40658383 -83417789 + L1_Mus1 LINE L1 6309 6567 0 4 895 345 274 41 33 chr9 40658402 40658523 -83417649 - MIRc SINE MIR -135 133 12 5 895 446 272 77 144 chr9 40658587 40658900 -83417272 + B4 SINE B4 1 292 0 5 895 678 153 29 4 chr9 40658901 40659146 -83417026 + (CA)n Simple_repeat Simple_repeat 1 251 0 5 895 243 217 0 0 chr9 40659175 40659235 -83416937 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 895 366 23 0 0 chr9 40659523 40659566 -83416606 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 895 519 17 0 0 chr9 40660420 40660480 -83415692 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 5 895 1420 80 5 0 chr9 40660492 40660680 -83415492 - B2_Mm1a SINE B2 -3 190 2 5 895 336 241 0 65 chr9 40660710 40660803 -83415369 - ID_B1 SINE B4 -60 164 78 5 895 402 254 60 23 chr9 40660798 40660931 -83415241 - B1F SINE Alu -1 148 11 5 895 370 298 112 52 chr9 40660996 40661247 -83414925 + LTR82B Low_complexity ERVL 128 393 -437 5 895 680 155 0 8 chr9 40661541 40661658 -83414514 + B3 SINE B2 1 116 -100 5 895 234 0 0 0 chr9 40661694 40661720 -83414452 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 895 2262 110 16 0 chr9 40661720 40662038 -83414134 - ORR1A3 LTR MaLR -3 323 1 5 895 724 311 35 55 chr9 40662491 40662837 -83413335 + Lx7 LINE L1 5650 6022 -278 5 895 222 118 0 0 chr9 40662988 40663022 -83413150 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 5 895 1353 125 22 53 chr9 40663175 40663403 -83412769 + URR1B DNA MER1_type 2 222 -3 5 895 327 265 30 20 chr9 40663783 40663883 -83412289 - PB1D7 SINE Alu -1 119 19 5 895 1524 78 48 32 chr9 40663887 40664138 -83412034 + ORR1A2-int LTR MaLR 1709 1963 0 5 895 2016 103 90 0 chr9 40664138 40664438 -83411734 + ORR1A2 LTR MaLR 1 327 0 5 895 320 280 9 48 chr9 40664444 40664549 -83411623 - RSINE1 SINE B4 -62 103 3 5 895 484 188 34 43 chr9 40665012 40665129 -83411043 - PB1D10 SINE Alu 0 117 2 5 895 234 62 0 0 chr9 40665389 40665421 -83410751 + (T)n Simple_repeat Simple_repeat 1 32 0 5 895 248 356 88 15 chr9 40665537 40665674 -83410498 - MIRb SINE MIR -37 231 85 5 895 234 342 86 6 chr9 40665862 40666024 -83410148 + B4A SINE B4 2 176 -116 5 895 198 91 0 0 chr9 40666068 40666101 -83410071 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 895 549 0 0 0 chr9 40666596 40666657 -83409515 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 5 895 212 132 0 50 chr9 40667013 40667053 -83409119 + GA-rich Low_complexity Low_complexity 2 39 0 5 895 198 0 0 0 chr9 40667261 40667283 -83408889 + (T)n Simple_repeat Simple_repeat 1 22 0 5 895 210 171 0 0 chr9 40668059 40668100 -83408072 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 5 895 518 153 20 7 chr9 40668253 40668368 -83407804 - B1F2 SINE Alu -21 129 17 5 895 285 282 31 46 chr9 40668266 40668396 -83407776 - ID_B1 SINE B4 -26 198 71 5 895 735 86 86 0 chr9 40668424 40668541 -83407631 + B1_Mus2 SINE Alu 9 135 -12 5 895 181 0 0 65 chr9 40668635 40668666 -83407506 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 895 2468 123 53 16 chr9 40668681 40669061 -83407111 + ORR1B1 LTR MaLR 1 394 0 5 895 600 246 99 0 chr9 40669280 40669422 -83406750 - RSINE1 SINE B4 -2 163 8 5 895 1937 145 88 15 chr9 40669425 40669767 -83406405 + ORR1B2 LTR MaLR 1 367 0 5 895 2319 66 13 7 chr9 40670486 40670790 -83405382 - L1Md_F2 LINE L1 -14 6568 6263 5 895 321 92 134 30 chr9 40671160 40671227 -83404945 + RMER15 LTR ERVL 2 75 -500 5 895 1198 98 16 0 chr9 40671258 40671442 -83404730 + B2_Mm1t SINE B2 7 193 0 5 895 613 285 60 30 chr9 40671443 40671678 -83404494 + RMER15 LTR ERVL 90 331 -244 5 895 288 214 0 0 chr9 40672254 40672310 -83403862 - ID_B1 SINE B4 0 224 169 5 895 428 274 39 0 chr9 40672260 40672362 -83403810 - PB1D10 SINE Alu -6 111 6 5 895 350 258 59 59 chr9 40672459 40672628 -83403544 - MIRb SINE MIR -22 246 78 5 895 962 141 0 11 chr9 40672731 40672911 -83403261 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 895 1193 86 111 0 chr9 40672985 40673183 -83402989 - ORR1B1 LTR MaLR 0 394 175 5 895 234 179 0 0 chr9 40673179 40673218 -83402954 - ORR1B1 LTR MaLR -355 39 1 5 895 313 279 71 79 chr9 40673432 40673572 -83402600 + RSINE1 SINE B4 4 142 -23 5 895 473 219 124 0 chr9 40673834 40673939 -83402233 - ID_B1 SINE B4 0 224 107 5 895 193 53 79 0 chr9 40674450 40674488 -83401684 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 5 895 391 259 16 49 chr9 40674711 40674833 -83401339 + RSINE1 SINE B4 3 120 -45 5 895 1151 75 0 0 chr9 40674833 40674979 -83401193 + B1_Mus2 SINE Alu 2 147 0 5 895 228 35 0 0 chr9 40675047 40675076 -83401096 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 895 254 359 13 0 chr9 40675190 40675268 -83400904 - B1_Mus1 SINE Alu -59 89 11 5 895 264 120 0 0 chr9 40675311 40675361 -83400811 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 895 473 292 116 12 chr9 40675390 40675563 -83400609 + B3A SINE B2 5 195 -3 5 895 272 274 16 110 chr9 40675581 40675708 -83400464 + PB1D10 SINE Alu 3 117 0 5 895 786 199 0 0 chr9 40675979 40676120 -83400052 - B1_Mur2 SINE Alu -8 141 1 5 895 217 115 65 16 chr9 40676401 40676463 -83399709 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 895 733 196 62 42 chr9 40676529 40676721 -83399451 + B3A SINE B2 2 197 -1 5 895 352 311 0 0 chr9 40676813 40676916 -83399256 - ID_B1 SINE B4 -7 217 115 5 895 942 155 0 0 chr9 40676974 40677116 -83399056 - B1_Mur4 SINE Alu -8 142 1 5 895 681 13 0 0 chr9 40677371 40677449 -83398723 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 895 890 129 7 7 chr9 40678316 40678464 -83397708 - B2_Mm2 SINE B2 0 195 48 5 895 273 336 17 8 chr9 40678559 40678679 -83397493 + MER33 DNA MER1_type 3 123 -201 5 895 425 288 110 0 chr9 40678689 40678807 -83397365 + ID_B1 SINE B4 94 224 0 5 895 630 0 0 0 chr9 40678897 40678967 -83397205 + (TTTTA)n Simple_repeat Simple_repeat 3 72 0 5 895 330 275 0 0 chr9 40678967 40679047 -83397125 - B1_Mur4 SINE Alu -12 138 59 5 895 221 337 12 0 chr9 40681291 40681374 -83394798 + GA-rich Low_complexity Low_complexity 3 86 0 5 895 180 111 0 0 chr9 40684079 40684106 -83392066 + (T)n Simple_repeat Simple_repeat 1 27 0 5 895 354 185 73 18 chr9 40684897 40685007 -83391165 - PB1D10 SINE Alu -1 116 1 5 895 698 62 10 0 chr9 40685135 40685231 -83390941 + (TC)n Simple_repeat Simple_repeat 1 97 0 5 895 21 0 0 0 chr9 40688221 40688242 -83387930 + GC_rich Low_complexity Low_complexity 1 21 0 5 895 414 0 0 0 chr9 40688325 40688371 -83387801 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 895 204 163 0 0 chr9 40688773 40688816 -83387356 + CT-rich Low_complexity Low_complexity 5 47 0 5 895 275 239 15 0 chr9 40689798 40689865 -83386307 - ID4 SINE ID -13 70 3 5 895 180 366 40 46 chr9 40690417 40690569 -83385603 + L3 LINE CR1 4265 4415 -74 5 895 396 0 0 0 chr9 40690616 40690660 -83385512 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 5 895 396 267 19 9 chr9 40690835 40690941 -83385231 - PB1D10 SINE Alu -8 109 3 5 895 362 277 0 60 chr9 40691700 40691800 -83384372 + ID_B1 SINE B4 78 171 -53 5 895 828 57 0 0 chr9 40691808 40691914 -83384258 + (GA)n Simple_repeat Simple_repeat 1 106 0 5 895 421 289 21 36 chr9 40691948 40692088 -83384084 + RSINE1 SINE B4 2 139 -26 5 895 675 235 55 74 chr9 40692251 40692453 -83383719 - B3A SINE B2 0 198 1 5 895 935 293 5 0 chr9 40692461 40692676 -83383496 - ID_B1 SINE B4 -5 219 4 5 895 197 0 0 67 chr9 40692778 40692808 -83383364 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 895 225 0 0 0 chr9 40692836 40692861 -83383311 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 895 309 318 104 43 chr9 40693635 40694243 -83381929 - HAL1 LINE L1 -782 1725 1081 5 895 484 333 62 0 chr9 40694480 40694675 -83381497 - ID_B1 SINE B4 -17 207 1 5 895 367 225 0 0 chr9 40694734 40694805 -83381367 - ID4 SINE ID -8 75 5 5 895 364 303 92 0 chr9 40694807 40694916 -83381256 - HAL1 LINE L1 -1815 692 574 5 895 294 274 113 27 chr9 40694935 40695085 -83381087 - HAL1 LINE L1 -2006 501 339 5 895 886 261 19 5 chr9 40695161 40695369 -83380803 - B3 SINE B2 -5 211 1 5 895 237 239 13 101 chr9 40695594 40695673 -83380499 + RMER15 LTR ERVL 1 72 -503 5 895 2263 169 33 132 chr9 40695669 40696277 -83379895 + RMER15 LTR ERVL 27 574 -1 5 895 393 305 0 0 chr9 40696873 40696978 -83379194 + RSINE1 SINE B4 4 108 -57 5 895 555 283 141 20 chr9 40697069 40697243 -83378929 + MER2 DNA MER2_type 43 240 -105 5 895 450 0 0 0 chr9 40697243 40697293 -83378879 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 895 555 283 141 20 chr9 40697293 40697367 -83378805 + MER2 DNA MER2_type 241 320 -25 5 895 520 329 102 21 chr9 40698416 40698652 -83377520 + B4A SINE B4 2 256 -36 5 895 294 29 0 0 chr9 40699288 40699323 -83376849 + (CTG)n Simple_repeat Simple_repeat 1 35 0 5 895 234 128 0 0 chr9 40699474 40699513 -83376659 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 5 895 313 248 186 35 chr9 40699514 40699627 -83376545 - B4A SINE B4 -1 291 162 5 895 1239 42 0 0 chr9 40699832 40699975 -83376197 - B1_Mus1 SINE Alu -5 143 1 5 895 415 112 0 24 chr9 40700350 40700432 -83375740 + (TA)n Simple_repeat Simple_repeat 1 80 0 5 895 229 271 0 0 chr9 40701207 40701255 -83374917 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 5 895 498 17 0 0 chr9 40701255 40701314 -83374858 + (TATG)n Simple_repeat Simple_repeat 2 60 0 5 895 447 190 32 65 chr9 40701321 40701445 -83374727 - RSINE1 SINE B4 -43 122 3 5 895 195 114 0 0 chr9 40701677 40701712 -83374460 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 5 895 898 49 8 0 chr9 40701712 40701835 -83374337 - B1_Mus2 SINE Alu 0 147 24 5 895 1058 131 130 39 chr9 40701984 40702191 -83373981 - URR1A DNA MER1_type 0 226 1 6 895 548 148 261 0 chr9 40702496 40702611 -83373561 - B1_Mus1 SINE Alu 0 148 4 6 895 243 88 0 0 chr9 40703309 40703343 -83372829 + (CTATG)n Simple_repeat Simple_repeat 1 34 0 6 895 374 271 28 9 chr9 40704255 40704363 -83371809 - B3A SINE B2 -73 125 16 6 895 189 0 0 0 chr9 40704363 40704384 -83371788 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 6 895 944 147 0 0 chr9 40704385 40704528 -83371644 - B1_Mur4 SINE Alu -7 143 1 6 895 315 0 0 0 chr9 40705234 40705269 -83370903 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 895 41935 6 0 0 chr9 40706663 40713039 -83363133 - L1Md_A LINE L1 0 6582 207 6 895 762 181 23 0 chr9 40713375 40713508 -83362664 - B3 SINE B2 -69 147 12 6 895 388 309 60 6 chr9 40713744 40713910 -83362262 - MER2 DNA MER2_type -1 344 170 6 895 293 275 100 0 chr9 40714713 40714793 -83361379 - PB1D10 SINE Alu -29 88 1 6 895 549 238 21 103 chr9 40715882 40716116 -83360056 - L1MB7 LINE L1 -9 6175 5961 6 895 457 245 18 35 chr9 40716401 40716515 -83359657 + PB1D7 SINE Alu 3 114 -6 6 895 360 0 0 0 chr9 40717321 40717361 -83358811 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 895 1086 114 43 16 chr9 40717733 40717920 -83358252 + MTC LTR MaLR 59 250 -171 6 895 1509 47 0 10 chr9 40719378 40719573 -83356599 + L1_Mus1 LINE L1 6375 6567 0 6 895 632 258 79 0 chr9 40719727 40719905 -83356267 - B3A SINE B2 -6 192 1 6 895 378 244 58 15 chr9 40720026 40720163 -83356009 + L1MEd LINE L1 33 175 -5944 6 895 402 21 0 0 chr9 40720358 40720405 -83355767 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 895 1020 78 39 0 chr9 40720405 40720558 -83355614 - B2_Mm1t SINE B2 -33 160 2 6 895 2154 42 0 4 chr9 40720729 40720991 -83355181 + L1Md_F2 LINE L1 6322 6582 0 6 895 231 36 0 0 chr9 40721078 40721106 -83355066 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 6 895 320 290 9 36 chr9 40721270 40721381 -83354791 + B1F1 SINE Alu 30 137 -12 6 895 385 212 12 0 chr9 40721863 40721943 -83354229 - ID_B1 SINE B4 -66 158 78 6 895 319 247 12 0 chr9 40722070 40722151 -83354021 + ID4_ SINE ID 2 83 0 6 895 23 0 0 0 chr9 40722340 40722363 -83353809 + AT_rich Low_complexity Low_complexity 1 23 0 6 895 363 218 4 44 chr9 40722532 40722637 -83353535 - PB1D10 SINE Alu -16 104 1 6 895 242 272 86 26 chr9 40722986 40723103 -83353069 - L1ME4a LINE L1 0 6124 6001 6 895 786 233 0 0 chr9 40723155 40723301 -83352871 - B1_Mur1 SINE Alu -2 147 2 6 895 857 200 136 64 chr9 40723304 40723476 -83352696 - B3 SINE B2 -10 206 14 6 895 507 131 0 0 chr9 40723579 40723652 -83352520 + (TCC)n Simple_repeat Simple_repeat 2 74 0 6 895 1250 83 0 11 chr9 40723652 40723834 -83352338 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 895 507 131 0 0 chr9 40723834 40723844 -83352328 + (TCC)n Simple_repeat Simple_repeat 1 10 0 6 895 1008 39 0 0 chr9 40723846 40723976 -83352196 - B1_Mus1 SINE Alu 0 148 19 6 895 1252 113 11 0 chr9 40724709 40724886 -83351286 + B2_Mm1t SINE B2 1 179 -14 6 895 328 98 321 9 chr9 40724941 40725053 -83351119 + B2_Mm2 SINE B2 47 193 -2 6 895 21 57 0 0 chr9 40725777 40725812 -83350360 + AT_rich Low_complexity Low_complexity 1 35 0 6 895 21 0 0 0 chr9 40726818 40726839 -83349333 + GC_rich Low_complexity Low_complexity 1 21 0 6 895 460 226 0 36 chr9 40727339 40727449 -83348723 - RSINE1 SINE B4 -57 108 3 6 895 1304 93 22 5 chr9 40728623 40728807 -83347365 + B2_Mm2 SINE B2 2 188 -7 6 895 1130 183 61 0 chr9 40728838 40728885 -83347287 - B3 SINE B2 -7 209 163 6 895 240 35 0 0 chr9 40728885 40728914 -83347258 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 895 1130 183 61 0 chr9 40728914 40729063 -83347109 - B3 SINE B2 -54 162 2 6 895 647 85 75 0 chr9 40729110 40729216 -83346956 + B2_Mm2 SINE B2 82 195 0 6 895 603 233 15 8 chr9 40730022 40730156 -83346016 - B1_Mur1 SINE Alu -10 139 5 6 895 234 91 0 0 chr9 40731054 40731087 -83345085 + (A)n Simple_repeat Simple_repeat 1 33 0 6 895 251 351 39 39 chr9 40731263 40731417 -83344755 - ORR1E LTR MaLR -162 197 44 6 895 1181 196 155 7 chr9 40731712 40731990 -83344182 + MTD LTR MaLR 3 321 -98 6 895 236 170 37 19 chr9 40731989 40732043 -83344129 + MTD LTR MaLR 275 329 0 6 895 237 232 36 0 chr9 40732102 40732158 -83344014 + PB1 SINE Alu 4 61 -66 6 895 287 221 69 59 chr9 40732169 40732270 -83343902 + ORR1E LTR MaLR 79 180 -179 6 895 1466 246 29 6 chr9 40732457 40732895 -83343277 + Lx6 LINE L1 6257 6874 -586 6 895 220 137 0 38 chr9 40732904 40732957 -83343215 + (CTATT)n Simple_repeat Simple_repeat 1 51 0 6 895 390 181 0 0 chr9 40733545 40733650 -83342522 + (CA)n Simple_repeat Simple_repeat 1 105 0 6 895 982 140 164 10 chr9 40733723 40733918 -83342254 - URR1B DNA MER1_type 0 225 1 6 895 226 218 21 179 chr9 40733975 40734070 -83342102 + RSINE1 SINE B4 86 165 0 6 895 459 0 0 0 chr9 40734071 40734122 -83342050 + (TAA)n Simple_repeat Simple_repeat 2 52 0 6 895 345 227 59 76 chr9 40734441 40734560 -83341612 - PB1D10 SINE Alu 0 117 1 6 895 2565 68 9 0 chr9 40734834 40735158 -83341014 + ORR1A2 LTR MaLR 1 327 0 6 895 213 121 0 0 chr9 40735373 40735406 -83340766 + (T)n Simple_repeat Simple_repeat 1 33 0 6 895 206 83 56 0 chr9 40736199 40736235 -83339937 + (CATG)n Simple_repeat Simple_repeat 3 40 0 6 895 524 308 6 13 chr9 40736235 40736386 -83339786 - RSINE1 SINE B4 -12 153 3 6 895 737 273 10 15 chr9 40736797 40736998 -83339174 + B3 SINE B2 16 215 -1 6 895 371 287 22 52 chr9 40737023 40737159 -83339013 + ID_B1 SINE B4 90 221 -3 6 895 349 176 20 35 chr9 40737291 40737392 -83338780 - PB1D10 SINE Alu 0 120 17 6 895 246 32 0 0 chr9 40738516 40738547 -83337625 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 895 622 132 6 209 chr9 40738566 40738748 -83337424 - B1_Mur4 SINE Alu 0 150 6 6 895 23 0 0 0 chr9 40738748 40738771 -83337401 + AT_rich Low_complexity Low_complexity 1 23 0 6 895 288 77 0 0 chr9 40739061 40739100 -83337072 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 895 764 117 29 92 chr9 40739101 40739236 -83336936 - B2_Mm2 SINE B2 -46 170 37 6 895 3952 132 19 22 chr9 40739236 40739878 -83336294 - Lx LINE L1 0 6654 6015 6 895 764 98 7 89 chr9 40739878 40739914 -83336258 - B2_Mm2 SINE B2 -159 36 1 6 895 469 252 0 9 chr9 40739990 40740098 -83336074 - PB1D10 SINE Alu 0 117 11 6 895 199 280 20 0 chr9 40740111 40740161 -83336011 + L2c LINE L2 3117 3167 -220 6 895 2296 142 39 15 chr9 40740241 40740647 -83335525 - MTC LTR MaLR 0 421 6 6 895 665 12 12 0 chr9 40741038 40741120 -83335052 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 895 439 256 56 56 chr9 40742843 40743004 -83333168 - ID_B1 SINE B4 -12 212 52 6 895 347 197 70 0 chr9 40742971 40743042 -83333130 + PB1D9 SINE Alu 45 120 0 6 895 669 222 20 20 chr9 40743269 40743416 -83332756 + RSINE1 SINE B4 4 150 -15 6 895 563 183 17 34 chr9 40744132 40744251 -83331921 - PB1D9 SINE Alu -1 119 3 6 895 728 22 0 11 chr9 40744251 40744342 -83331830 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 6 895 424 123 24 12 chr9 40744342 40744418 -83331754 + CT-rich Low_complexity Low_complexity 9 86 0 6 895 1155 89 6 11 chr9 40744418 40744599 -83331573 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 6 895 626 225 148 25 chr9 40744604 40744800 -83331372 - B4 SINE B4 -72 220 1 6 895 238 376 15 0 chr9 40745215 40745348 -83330824 + L2a LINE L2 3276 3410 -16 6 895 379 227 0 113 chr9 40745758 40745882 -83330290 + MT2B LTR ERVL 159 268 -333 6 895 692 128 30 46 chr9 40745782 40745913 -83330259 + B1_Mur3 SINE Alu 15 143 -6 6 895 2450 87 16 0 chr9 40745951 40746273 -83329899 + ORR1A2 LTR MaLR 1 327 0 6 895 732 251 102 10 chr9 40746492 40746697 -83329475 - ID_B1 SINE B4 0 224 1 6 895 674 174 0 0 chr9 40746786 40746901 -83329271 + PB1D9 SINE Alu 1 115 -5 6 895 549 0 0 0 chr9 40747087 40747148 -83329024 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 895 360 0 0 0 chr9 40747148 40747187 -83328985 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 895 195 42 0 0 chr9 40747214 40747238 -83328934 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 895 300 337 43 25 chr9 40747249 40747529 -83328643 - L1MC4a LINE L1 -1984 5898 5614 6 895 646 267 11 22 chr9 40747557 40747741 -83328431 - MIR SINE MIR -21 241 60 6 895 226 295 77 62 chr9 40747889 40748084 -83328088 - L1MC4a LINE L1 -2427 5455 5258 6 895 722 290 7 74 chr9 40748590 40748899 -83327273 - B4A SINE B4 0 292 5 6 895 230 250 0 0 chr9 40748990 40749038 -83327134 + ID_B1 SINE B4 137 184 -40 6 895 305 274 0 128 chr9 40749634 40749743 -83326429 + PB1D7 SINE Alu 24 118 -2 6 895 1013 124 7 0 chr9 40749889 40750034 -83326138 - B1_Mus1 SINE Alu -2 146 1 6 895 839 150 23 5 chr9 40750427 40751192 -83324980 + (TG)n Simple_repeat Simple_repeat 1 778 0 6 895 318 356 0 0 chr9 40751217 40751318 -83324854 - PB1D10 SINE Alu -14 103 3 6 895 278 194 0 16 chr9 40751811 40751874 -83324298 + B3 SINE B2 152 213 -3 6 895 357 287 89 0 chr9 40752018 40752119 -83324053 + RSINE1 SINE B4 3 112 -53 6 895 271 212 0 29 chr9 40752189 40752257 -83323915 + GA-rich Low_complexity Low_complexity 3 68 0 7 895 438 20 0 0 chr9 40753052 40753103 -83323069 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 895 708 263 37 23 chr9 40753425 40753639 -83322533 + ID_B1 SINE B4 4 220 -4 7 895 623 175 16 8 chr9 40755791 40755912 -83320260 + B3A SINE B2 2 123 -75 7 895 321 292 34 0 chr9 40756041 40756130 -83320042 + ORR1E LTR MaLR 32 123 -236 7 895 822 143 0 22 chr9 40758456 40758592 -83317580 - B1_Mur4 SINE Alu -2 148 16 7 895 722 275 24 5 chr9 40759345 40759553 -83316619 - B3 SINE B2 -4 212 1 7 895 749 236 133 5 chr9 40759732 40759928 -83316244 - ID_B1 SINE B4 -2 222 2 7 895 1226 217 86 86 chr9 40760067 40760170 -83316002 + ORR1D1 LTR MaLR 1 96 -278 7 895 1211 79 91 0 chr9 40760170 40760335 -83315837 + B2_Mm2 SINE B2 3 182 -13 7 895 1226 217 86 86 chr9 40760335 40760604 -83315568 + ORR1D1 LTR MaLR 97 373 -1 7 895 221 342 0 0 chr9 40760605 40760690 -83315482 + MIR SINE MIR 65 151 -125 7 895 291 229 186 0 chr9 40760898 40760968 -83315204 + PB1D9 SINE Alu 29 111 -9 7 895 305 346 10 0 chr9 40760995 40761096 -83315076 + RSINE1 SINE B4 60 161 -4 7 895 201 74 0 0 chr9 40762814 40762841 -83313331 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 895 513 268 0 67 chr9 40762848 40763012 -83313160 - RSINE1 SINE B4 -11 154 2 7 895 529 252 19 11 chr9 40763107 40763246 -83312926 - RSINE1 SINE B4 -14 151 11 7 896 23 33 0 0 chr9 40763439 40763469 -83312703 + AT_rich Low_complexity Low_complexity 1 30 0 7 896 267 57 36 36 chr9 40764570 40764625 -83311547 + (TTTTTG)n Simple_repeat Simple_repeat 3 57 0 7 896 986 172 13 67 chr9 40764667 40764867 -83311305 + B3 SINE B2 1 196 -20 7 896 3063 85 0 2 chr9 40764867 40765268 -83310904 + MTB LTR MaLR 1 400 0 7 896 986 172 13 67 chr9 40765268 40765291 -83310881 + B3 SINE B2 197 212 -4 7 896 251 356 8 25 chr9 40765508 40765629 -83310543 + MIRb SINE MIR 147 265 -3 7 896 237 240 40 0 chr9 40765702 40765777 -83310395 + (TA)n Simple_repeat Simple_repeat 2 79 0 7 896 328 257 0 0 chr9 40766251 40766325 -83309847 + MTEa LTR MaLR 4 77 -302 7 896 540 216 160 16 chr9 40766344 40766532 -83309640 + MTEa LTR MaLR 155 369 -10 7 896 840 228 24 13 chr9 40766828 40767020 -83309152 - B3A SINE B2 -38 178 1 7 896 316 261 29 0 chr9 40767158 40767227 -83308945 + ID4_ SINE ID 11 81 -2 7 896 4348 78 5 3 chr9 40767690 40768260 -83307912 - L1_Mus3 LINE L1 -3 6635 6065 7 896 283 219 157 28 chr9 40768600 40768708 -83307464 + MTEa LTR MaLR 250 371 -8 7 896 414 0 0 0 chr9 40769745 40769791 -83306381 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 896 212 315 32 43 chr9 40770083 40770176 -83305996 + PB1D10 SINE Alu 13 104 -13 7 896 342 0 0 0 chr9 40770177 40770215 -83305957 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 896 526 95 0 21 chr9 40770543 40770640 -83305532 + (TG)n Simple_repeat Simple_repeat 1 95 0 7 896 312 91 0 0 chr9 40771591 40771635 -83304537 + (A)n Simple_repeat Simple_repeat 1 44 0 7 896 24 53 0 0 chr9 40772179 40772217 -83303955 + GC_rich Low_complexity Low_complexity 1 38 0 7 896 228 250 0 18 chr9 40772891 40772948 -83303224 + MTEa LTR MaLR 11 66 -293 7 896 320 243 175 0 chr9 40773044 40773147 -83303025 + MTEa LTR MaLR 258 378 -1 7 896 596 38 0 12 chr9 40774648 40774728 -83301444 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 896 557 291 28 28 chr9 40774731 40774911 -83301261 - B3A SINE B2 -16 182 3 7 896 1109 123 47 0 chr9 40774947 40775117 -83301055 + B2_Mm1t SINE B2 2 179 -14 7 896 263 148 18 36 chr9 40775149 40775205 -83300967 + B2_Mm2 SINE B2 47 101 -94 7 896 1166 68 0 20 chr9 40775257 40775408 -83300764 + B1_Mus1 SINE Alu 1 148 0 7 896 254 280 0 26 chr9 40776629 40776706 -83299466 + PB1D10 SINE Alu 43 117 0 7 896 988 97 21 0 chr9 40776707 40776852 -83299320 + B1_Mur4 SINE Alu 1 148 -2 7 896 513 316 30 38 chr9 40777007 40777270 -83298902 + MER2 DNA MER2_type 84 344 -1 7 896 330 26 0 0 chr9 40777363 40777402 -83298770 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 896 753 219 19 13 chr9 40777402 40777559 -83298613 - RSINE1 SINE B4 -5 160 3 7 896 333 270 66 48 chr9 40779241 40779416 -83296756 + L1MD3 LINE L1 6582 6772 -1110 7 896 306 310 44 0 chr9 40779819 40779932 -83296240 + L1MD3 LINE L1 7481 7598 -444 7 896 2012 170 53 3 chr9 40780003 40780363 -83295809 - ORR1C1 LTR MaLR 0 378 1 7 896 216 324 0 0 chr9 40780629 40780729 -83295443 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 896 249 159 0 0 chr9 40780810 40780854 -83295318 + T-rich Low_complexity Low_complexity 1 44 0 7 896 337 233 22 11 chr9 40781948 40782039 -83294133 - Tigger9a DNA Tigger -38 694 603 7 896 363 306 150 79 chr9 40782124 40782465 -83293707 + MTEa LTR MaLR 1 365 -14 7 896 207 0 0 0 chr9 40783133 40783156 -83293016 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 896 1642 199 8 46 chr9 40783953 40784322 -83291850 + ORR1C1 LTR MaLR 1 355 -23 7 896 419 278 8 34 chr9 40785036 40785155 -83291017 - Lx8 LINE L1 -354 7119 7004 7 896 1290 97 43 5 chr9 40785261 40785448 -83290724 - B2_Mm2 SINE B2 0 195 2 7 896 1162 54 0 26 chr9 40785581 40785732 -83290440 - B1_Mus1 SINE Alu 0 148 2 7 896 215 268 121 12 chr9 40785810 40785893 -83290279 + L2a LINE L2 3304 3395 -31 7 896 817 196 0 7 chr9 40786431 40786575 -83289597 - B1_Mur1 SINE Alu -6 143 1 7 896 1230 107 23 0 chr9 40786595 40786772 -83289400 - B2_Mm2 SINE B2 -14 181 1 7 896 1292 218 37 112 chr9 40786772 40787181 -83288991 + MTE2a LTR MaLR 2 379 0 7 896 198 71 0 0 chr9 40787184 40787212 -83288960 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 896 206 289 53 0 chr9 40787407 40787483 -83288689 + L3b LINE CR1 195 274 -208 7 896 465 262 0 0 chr9 40788490 40788597 -83287575 + RSINE1 SINE B4 3 109 -56 7 896 232 269 14 56 chr9 40788769 40788840 -83287332 + ID4_ SINE ID 2 69 -14 7 896 960 242 9 5 chr9 40788900 40789112 -83287060 + B3 SINE B2 1 213 -3 7 896 256 260 52 10 chr9 40789400 40789497 -83286675 + MLT1A1 LTR MaLR 26 126 -282 7 896 941 207 49 5 chr9 40789537 40789741 -83286431 - B3 SINE B2 -2 214 2 7 896 853 72 14 0 chr9 40789771 40789910 -83286262 + (TC)n Simple_repeat Simple_repeat 1 141 0 7 896 524 184 0 0 chr9 40790000 40790087 -83286085 - B1_Mur3 SINE Alu -58 91 5 7 896 586 262 121 0 chr9 40790091 40790297 -83285875 - B4A SINE B4 -61 231 1 7 896 431 284 46 60 chr9 40790301 40790518 -83285654 - L1MA5 LINE L1 -186 6114 5901 7 896 189 0 0 0 chr9 40791136 40791157 -83285015 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 896 201 74 0 0 chr9 40791314 40791341 -83284831 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 7 896 342 0 0 0 chr9 40791720 40791758 -83284414 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 896 823 298 14 9 chr9 40791915 40792132 -83284040 + B4A SINE B4 3 220 -72 7 896 201 196 0 0 chr9 40792133 40792179 -83283993 + (CCAA)n Simple_repeat Simple_repeat 1 46 0 7 896 197 236 0 35 chr9 40793009 40793066 -83283106 + MIR SINE MIR 199 253 -9 7 896 22 80 0 0 chr9 40793285 40793335 -83282837 + AT_rich Low_complexity Low_complexity 1 50 0 7 896 1277 96 51 0 chr9 40793344 40793521 -83282651 + B2_Mm2 SINE B2 1 186 -9 7 896 553 262 27 0 chr9 40793695 40793882 -83282290 + Charlie1b DNA MER1_type 301 492 -31 7 896 1250 107 11 0 chr9 40793931 40794108 -83282064 + B2_Mm1t SINE B2 1 179 -14 7 896 345 109 0 0 chr9 40794174 40794229 -83281943 + B2_Mm2 SINE B2 47 101 -94 7 896 529 229 213 10 chr9 40794279 40794486 -83281686 + B4A SINE B4 43 291 -1 7 896 549 88 0 0 chr9 40794504 40794584 -83281588 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 896 23 0 0 0 chr9 40794661 40794684 -83281488 + AT_rich Low_complexity Low_complexity 1 23 0 7 896 289 277 34 57 chr9 40794715 40794891 -83281281 + Charlie1a DNA MER1_type 1233 1404 -51 7 896 855 204 26 5 chr9 40795103 40795295 -83280877 + RLTR16 LTR ERVK 1 196 -309 7 896 1288 211 75 30 chr9 40795447 40795809 -83280363 + MTD LTR MaLR 42 419 0 7 896 497 265 29 29 chr9 40796570 40796706 -83279466 - B1F SINE Alu -7 142 7 7 896 3165 65 2 22 chr9 40797303 40797710 -83278462 - L1_Mus2 LINE L1 -4 6562 6164 7 896 2736 59 3 0 chr9 40797710 40798051 -83278121 + L1_Mus2 LINE L1 5845 6186 -380 7 896 504 308 93 0 chr9 40798476 40798658 -83277514 - B4A SINE B4 -86 206 8 7 896 196 370 49 0 chr9 40798926 40799007 -83277165 + MIRm SINE MIR 48 132 -144 7 896 1116 147 16 21 chr9 40799382 40799576 -83276596 + URR1B DNA MER1_type 1 193 -32 7 896 272 309 12 47 chr9 40799623 40799637 -83276535 + ID4_ SINE ID 1 51 -32 7 896 283 277 15 0 chr9 40799637 40799702 -83276470 + tRNA-Ala-GCY_ tRNA tRNA 8 73 -2 7 896 345 47 0 0 chr9 40800012 40800055 -83276117 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 896 356 301 78 47 chr9 40800167 40800359 -83275813 + B3A SINE B2 1 198 0 7 896 336 284 9 64 chr9 40800415 40800524 -83275648 + RSINE1 SINE B4 41 143 -22 7 896 233 77 0 49 chr9 40800550 40800591 -83275581 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 896 214 179 88 15 chr9 40800834 40800902 -83275270 - PB1D9 SINE Alu -45 75 3 7 896 227 279 80 62 chr9 40801367 40801543 -83274629 - MER20 DNA MER1_type -2 217 39 7 896 630 0 0 0 chr9 40803058 40803128 -83273044 + (TC)n Simple_repeat Simple_repeat 2 71 0 8 896 519 17 0 0 chr9 40803128 40803187 -83272985 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 896 234 0 0 0 chr9 40803280 40803306 -83272866 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 896 588 264 0 0 chr9 40803758 40803898 -83272274 - ID_B1 SINE B4 -1 223 84 8 896 623 198 48 0 chr9 40803773 40803899 -83272273 - B1F SINE Alu -16 133 2 8 896 981 244 57 29 chr9 40804154 40804433 -83271739 + B4A SINE B4 1 287 -5 8 896 201 267 0 0 chr9 40804436 40804481 -83271691 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 8 896 262 88 34 34 chr9 40804481 40804540 -83271632 + (CAGAGA)n Simple_repeat Simple_repeat 6 64 0 8 896 1104 63 42 0 chr9 40805048 40805190 -83270982 + B1_Mus1 SINE Alu 1 148 0 8 896 224 138 0 49 chr9 40805191 40805252 -83270920 + A-rich Low_complexity Low_complexity 1 58 0 8 896 689 132 17 17 chr9 40805856 40806033 -83270139 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 8 896 228 216 0 0 chr9 40806037 40806088 -83270084 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 8 896 381 122 0 0 chr9 40806081 40806155 -83270017 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 8 896 620 236 0 75 chr9 40806155 40806329 -83269843 - RSINE1 SINE B4 0 165 5 8 896 632 255 42 97 chr9 40806541 40806849 -83269323 + B4A SINE B4 2 292 0 8 896 216 0 0 0 chr9 40806862 40806886 -83269286 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 896 495 0 0 0 chr9 40807090 40807145 -83269027 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 896 21 57 0 0 chr9 40807216 40807251 -83268921 + AT_rich Low_complexity Low_complexity 1 35 0 8 896 1032 194 28 28 chr9 40808099 40808311 -83267861 + B3 SINE B2 4 215 -1 8 896 456 192 175 8 chr9 40808328 40808454 -83267718 + B3A SINE B2 36 182 -16 8 896 547 262 113 47 chr9 40808742 40808998 -83267174 + B4A SINE B4 16 288 -4 8 896 432 0 0 0 chr9 40809027 40809075 -83267097 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 896 727 183 91 6 chr9 40810249 40810414 -83265758 + B3A SINE B2 2 180 -18 8 896 465 99 0 0 chr9 40810508 40810589 -83265583 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 896 231 284 15 15 chr9 40810675 40810743 -83265429 + MIRb SINE MIR 103 170 -98 8 896 399 311 60 15 chr9 40810881 40811015 -83265157 - B1F1 SINE Alu 0 149 10 8 896 787 235 24 10 chr9 40811754 40811960 -83264212 + B3 SINE B2 1 209 -7 8 896 635 165 92 0 chr9 40812133 40812242 -83263930 + B1_Mur4 SINE Alu 1 119 -31 8 896 1164 205 5 0 chr9 40813471 40813676 -83262496 - B3 SINE B2 -10 206 1 8 896 248 309 0 14 chr9 40814014 40814083 -83262089 + B3A SINE B2 97 164 -34 8 896 213 121 0 0 chr9 40814084 40814117 -83262055 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 896 267 93 0 0 chr9 40814117 40814160 -83262012 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 896 3539 163 59 27 chr9 40814270 40814933 -83261239 + Lx5 LINE L1 6364 7047 -3 8 896 208 244 0 0 chr9 40815171 40815216 -83260956 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 896 434 239 87 87 chr9 40815528 40815757 -83260415 - MER34A1 LTR ERV1 -348 239 11 8 896 224 293 48 12 chr9 40816407 40816490 -83259682 + MIRc SINE MIR 122 207 -61 8 896 805 156 34 34 chr9 40816871 40817017 -83259155 + B1_Mur4 SINE Alu 5 150 0 8 896 21 57 0 0 chr9 40817099 40817134 -83259038 + AT_rich Low_complexity Low_complexity 1 35 0 8 896 877 159 0 0 chr9 40817150 40817288 -83258884 - B1_Mur4 SINE Alu -12 138 1 8 896 301 311 72 41 chr9 40818230 40818429 -83257743 + MER34 LTR ERV1 5 208 -363 8 896 379 317 67 0 chr9 40818595 40818715 -83257457 + ID_B1 SINE B4 88 215 -9 8 896 198 103 0 0 chr9 40820990 40821019 -83255153 + (A)n Simple_repeat Simple_repeat 1 29 0 8 896 217 48 0 67 chr9 40822051 40822096 -83254076 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 8 896 21 0 0 0 chr9 40822787 40822808 -83253364 + AT_rich Low_complexity Low_complexity 1 21 0 8 896 842 244 55 29 chr9 40823394 40823668 -83252504 - MER44A DNA MER2_type -11 328 48 8 896 553 252 105 15 chr9 40823795 40823928 -83252244 - ID_B1 SINE B4 -7 217 73 8 896 211 191 0 0 chr9 40824077 40824119 -83252053 + C-rich Low_complexity Low_complexity 1 42 0 8 896 285 186 97 28 chr9 40824825 40824897 -83251275 + L1MA5 LINE L1 6216 6292 -8 8 896 251 297 27 0 chr9 40824915 40824989 -83251183 + ID4 SINE ID 8 83 0 8 896 280 332 62 14 chr9 40825137 40825345 -83250827 - L1MD2 LINE L1 -70 6289 6072 8 896 421 291 0 25 chr9 40827374 40827494 -83248678 + PB1D7 SINE Alu 1 117 -3 8 896 188 153 0 48 chr9 40827505 40827567 -83248605 + (CCAA)n Simple_repeat Simple_repeat 1 59 0 8 896 1395 72 0 20 chr9 40827586 40827891 -83248281 + (CCAA)n Simple_repeat Simple_repeat 1 298 0 8 896 180 111 0 0 chr9 40828892 40828919 -83247253 + (CTTA)n Simple_repeat Simple_repeat 1 27 0 8 896 578 265 66 6 chr9 40828919 40829101 -83247071 - B3 SINE B2 -9 207 15 8 896 1067 190 19 2 chr9 40830061 40830454 -83245718 + BGLII_B LTR ERVK 1 441 0 8 896 467 60 15 0 chr9 40830889 40830956 -83245216 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 896 297 191 48 0 chr9 40831016 40831079 -83245093 + B4A SINE B4 81 146 -146 8 896 535 204 9 9 chr9 40831026 40831135 -83245037 + PB1D10 SINE Alu 9 117 0 8 896 4510 196 70 12 chr9 40831735 40832683 -83243489 + Lx9 LINE L1 6632 7634 -10 8 896 482 231 9 37 chr9 40832998 40833106 -83243066 - PB1D10 SINE Alu -12 105 1 8 896 820 217 0 0 chr9 40833628 40833766 -83242406 + B1_Mur1 SINE Alu 5 142 -7 8 896 213 39 0 0 chr9 40833778 40833804 -83242368 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 8 896 477 209 0 21 chr9 40834097 40834206 -83241966 + B1F SINE Alu 8 110 -10 8 896 246 32 0 0 chr9 40834206 40834237 -83241935 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 896 686 96 0 9 chr9 40835013 40835051 -83241121 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 896 1055 127 6 0 chr9 40835051 40835224 -83240948 + (GGAGAA)n Simple_repeat Simple_repeat 3 176 0 8 896 686 96 0 9 chr9 40835224 40835290 -83240882 + (GA)n Simple_repeat Simple_repeat 1 66 0 8 896 409 184 58 58 chr9 40835905 40836009 -83240163 + PB1D10 SINE Alu 14 117 0 8 896 272 313 89 30 chr9 40836508 40836676 -83239496 + MIR SINE MIR 10 187 -75 8 896 924 344 64 61 chr9 40836802 40837256 -83238916 - MER44B DNA MER2_type 0 550 95 8 896 2031 148 153 24 chr9 40837256 40837629 -83238543 + MTC LTR MaLR 1 421 0 8 896 924 344 64 61 chr9 40837629 40837718 -83238454 - MER44B DNA MER2_type -456 94 5 8 896 262 375 81 0 chr9 40837929 40838089 -83238083 + MIRc SINE MIR 77 249 -19 8 896 824 219 82 20 chr9 40838333 40838529 -83237643 - B3 SINE B2 -6 210 3 8 896 491 159 3 0 chr9 40839037 40839126 -83237046 + B2_Mm2 SINE B2 3 92 -106 8 896 952 142 0 26 chr9 40839352 40839504 -83236668 + B1_Mus1 SINE Alu 1 148 0 8 896 601 208 78 23 chr9 40840832 40840960 -83235212 + B1_Mur3 SINE Alu 2 136 -13 8 896 2547 80 6 0 chr9 40841079 40841403 -83234769 + ORR1A2 LTR MaLR 2 327 0 8 896 289 257 125 25 chr9 40841489 40841701 -83234471 - L1MA9 LINE L1 -388 5924 5695 8 896 812 261 63 0 chr9 40841890 40842097 -83234075 - ID_B1 SINE B4 -2 222 3 8 896 194 278 178 0 chr9 40843305 40843395 -83232777 - MIRb SINE MIR -137 131 26 8 896 477 0 0 0 chr9 40843977 40844030 -83232142 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 896 602 250 74 26 chr9 40844097 40844286 -83231886 - B3A SINE B2 0 198 1 8 896 183 80 0 0 chr9 40844312 40844337 -83231835 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 8 896 286 268 22 44 chr9 40844382 40844472 -83231700 - RSINE1 SINE B4 -70 95 8 8 896 257 343 26 61 chr9 40844474 40844490 -83231682 - PB1D10 SINE Alu 0 117 7 8 896 324 292 131 30 chr9 40844490 40844589 -83231583 - B4 SINE B4 -92 200 92 8 896 191 103 0 25 chr9 40846171 40846211 -83229961 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 896 655 225 16 0 chr9 40846216 40846345 -83229827 - B3 SINE B2 -66 150 20 8 896 22 0 0 0 chr9 40846677 40846699 -83229473 + AT_rich Low_complexity Low_complexity 1 22 0 8 896 268 299 90 58 chr9 40847079 40847235 -83228937 + B4 SINE B4 38 198 -94 8 896 567 213 62 16 chr9 40847145 40847274 -83228898 + B1F1 SINE Alu 12 146 -3 8 896 733 181 77 35 chr9 40847783 40847926 -83228246 + B1_Mur4 SINE Alu 2 150 0 8 896 253 264 96 14 chr9 40848087 40848160 -83228012 + ID4_ SINE ID 1 79 -4 8 896 1048 175 72 5 chr9 40848328 40848523 -83227649 + B3 SINE B2 8 215 -1 8 896 234 270 124 18 chr9 40848764 40848877 -83227295 - B3A SINE B2 -7 191 67 8 896 369 252 102 29 chr9 40848903 40849098 -83227074 - B4A SINE B4 -44 248 3 8 896 1021 226 67 0 chr9 40849153 40849361 -83226811 - ID_B1 SINE B4 0 224 3 8 896 566 223 139 40 chr9 40850217 40850418 -83225754 - Tigger7 DNA MER2_type 0 2491 2271 8 896 660 257 117 59 chr9 40850494 40850767 -83225405 - B4A SINE B4 0 292 4 8 896 669 25 0 0 chr9 40851238 40851317 -83224855 + (TG)n Simple_repeat Simple_repeat 1 79 0 8 896 667 250 0 0 chr9 40851322 40851446 -83224726 - RSINE1 SINE B4 -39 126 3 9 896 426 311 69 46 chr9 40852201 40852376 -83223796 - MER20 DNA MER1_type -39 180 2 9 896 192 111 36 18 chr9 40853091 40853146 -83223026 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 9 896 277 301 162 32 chr9 40853172 40853388 -83222784 + LTR37A LTR ERV1 30 273 -153 9 896 592 305 70 5 chr9 40853921 40854122 -83222050 + ID_B1 SINE B4 1 214 -10 9 896 232 351 90 78 chr9 40854586 40854830 -83221342 + ORR1E LTR MaLR 44 290 -69 9 896 474 18 0 0 chr9 40855345 40855400 -83220772 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 9 896 248 294 19 19 chr9 40855535 40855639 -83220533 + L1MA8 LINE L1 6037 6140 -151 9 896 245 313 0 0 chr9 40855642 40855709 -83220463 + ID4 SINE ID 5 71 -12 9 896 2092 85 78 0 chr9 40855929 40856222 -83219950 + ORR1A2 LTR MaLR 4 319 -8 9 896 634 286 11 45 chr9 40856205 40856384 -83219788 + B3 SINE B2 19 191 -25 9 896 641 258 13 107 chr9 40856408 40856642 -83219530 + ID_B1 SINE B4 1 212 -12 9 896 255 263 35 0 chr9 40856761 40856818 -83219354 - B3A SINE B2 -70 128 70 9 896 652 243 14 22 chr9 40857685 40857824 -83218348 + ID_B1 SINE B4 84 221 -3 9 896 682 253 95 70 chr9 40857827 40858069 -83218103 + B4 SINE B4 7 254 -38 9 896 570 15 0 0 chr9 40858095 40858162 -83218010 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 896 231 250 98 98 chr9 40860159 40860277 -83215895 - L2b LINE L2 -72 3354 3190 9 896 394 200 221 26 chr9 40860277 40860390 -83215782 + B1F1 SINE Alu 5 139 -10 9 896 1143 101 0 0 chr9 40860390 40860558 -83215614 + (TAG)n Simple_repeat Simple_repeat 1 168 0 9 896 192 250 98 98 chr9 40860558 40860602 -83215570 - L2b LINE L2 -200 3226 3192 9 896 223 330 50 50 chr9 40861021 40861120 -83215052 - MIR3 SINE MIR -20 188 90 9 896 219 291 56 118 chr9 40861672 40861816 -83214356 + L3b LINE CR1 2 136 -346 9 896 916 229 75 0 chr9 40861904 40862105 -83214067 - B3 SINE B2 0 216 1 9 896 203 238 0 60 chr9 40863596 40863663 -83212509 + CT-rich Low_complexity Low_complexity 3 65 0 9 896 782 105 47 47 chr9 40863876 40864026 -83212146 - URR1A DNA MER1_type 0 226 77 9 896 185 0 0 39 chr9 40864171 40864197 -83211975 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 9 896 273 57 0 0 chr9 40864645 40864680 -83211492 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 896 264 30 0 0 chr9 40864688 40864721 -83211451 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 896 438 20 0 0 chr9 40864721 40864771 -83211401 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 896 594 250 23 0 chr9 40864773 40864901 -83211271 - ID_B1 SINE B4 -19 205 75 9 896 822 172 28 0 chr9 40864892 40865037 -83211135 - B3 SINE B2 -5 211 63 9 896 284 268 78 125 chr9 40864984 40865112 -83211060 - ID_B1 SINE B4 -101 123 2 9 896 824 275 67 5 chr9 40865594 40865802 -83210370 + ID_B1 SINE B4 4 224 0 9 896 551 222 111 0 chr9 40865811 40865937 -83210235 + B1_Mur1 SINE Alu 1 140 -9 9 896 626 229 14 41 chr9 40865998 40866144 -83210028 + ID_B1 SINE B4 79 220 -4 9 896 280 329 177 49 chr9 40866534 40866721 -83209451 + B4 SINE B4 1 217 -75 9 896 249 33 0 0 chr9 40866721 40866751 -83209421 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 9 896 280 329 177 49 chr9 40866751 40866806 -83209366 + B4 SINE B4 218 273 -19 9 896 522 0 0 0 chr9 40866825 40866883 -83209289 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 896 242 364 11 11 chr9 40867453 40867542 -83208630 + MER87 LTR ERV1 368 456 -85 9 896 727 127 25 0 chr9 40867566 40867684 -83208488 - B1_Mur1 SINE Alu -7 142 22 9 896 421 214 20 127 chr9 40867747 40867897 -83208275 + MT2B LTR ERVL 131 264 -337 9 896 794 159 0 16 chr9 40867789 40867917 -83208255 + B1_Mur3 SINE Alu 7 132 -17 9 896 321 210 32 0 chr9 40868226 40868288 -83207884 + B3 SINE B2 140 203 -13 9 896 180 170 0 0 chr9 40868310 40868363 -83207809 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 9 896 199 262 0 11 chr9 40868453 40868627 -83207545 + CT-rich Low_complexity Low_complexity 1 172 0 9 896 364 301 41 27 chr9 40870361 40870508 -83205664 + MIRb SINE MIR 104 252 -16 9 896 851 263 36 73 chr9 40870972 40871275 -83204897 + B4A SINE B4 1 292 0 9 896 351 0 0 0 chr9 40872876 40872915 -83203257 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 9 896 1193 61 0 33 chr9 40873161 40873300 -83202872 + B1_Mus1 SINE Alu 1 139 -9 9 896 681 24 0 0 chr9 40873300 40873383 -83202789 + (CAAAC)n Simple_repeat Simple_repeat 2 84 0 9 896 1193 61 0 33 chr9 40873383 40873396 -83202776 + B1_Mus1 SINE Alu 140 148 0 9 896 414 272 32 120 chr9 40873429 40873480 -83202692 - Lx8 LINE L1 -9 7464 7411 9 896 1420 88 5 25 chr9 40873480 40873677 -83202495 - B2_Mm1t SINE B2 0 193 1 9 896 414 272 32 120 chr9 40873677 40873778 -83202394 - Lx8 LINE L1 -63 7410 7332 9 896 1104 109 0 0 chr9 40873778 40873925 -83202247 + B1_Mus1 SINE Alu 1 147 -1 9 896 414 272 32 120 chr9 40873925 40873988 -83202184 - Lx8 LINE L1 -142 7331 7269 9 896 2408 81 25 9 chr9 40873988 40874312 -83201860 + ORR1A4 LTR MaLR 1 329 0 9 896 414 272 32 120 chr9 40874312 40874378 -83201794 - Lx8 LINE L1 -205 7268 7207 9 896 809 298 106 38 chr9 40874485 40874750 -83201422 + B4 SINE B4 10 292 0 9 896 573 154 0 0 chr9 40874756 40874866 -83201306 + (CA)n Simple_repeat Simple_repeat 1 110 0 9 896 696 83 0 0 chr9 40875677 40875773 -83200399 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 9 896 654 318 77 55 chr9 40876003 40876369 -83199803 + MLT1E3 LTR MaLR 270 643 -37 9 896 259 246 170 50 chr9 40877496 40877637 -83198535 - MLT1A0 LTR MaLR 0 365 208 9 896 862 136 0 0 chr9 40877567 40877692 -83198480 + B1_Mus1 SINE Alu 23 147 -1 9 896 260 320 58 94 chr9 40877574 40877712 -83198460 + B4A SINE B4 114 246 -46 9 896 201 225 0 0 chr9 40877712 40877752 -83198420 + GA-rich Low_complexity Low_complexity 1 40 0 9 896 333 282 29 0 chr9 40877753 40877856 -83198316 - MLT1A LTR MaLR -53 321 216 9 896 468 51 0 0 chr9 40878351 40878410 -83197762 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 896 208 179 26 0 chr9 40878560 40878599 -83197573 + A-rich Low_complexity Low_complexity 3 42 0 9 896 828 143 0 0 chr9 40879356 40879496 -83196676 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 9 896 638 266 22 0 chr9 40879504 40879643 -83196529 + RSINE1 SINE B4 1 142 -23 9 896 432 0 0 0 chr9 40879665 40879713 -83196459 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 896 25 51 0 0 chr9 40879746 40879785 -83196387 + AT_rich Low_complexity Low_complexity 1 39 0 9 896 1327 76 11 5 chr9 40879846 40880031 -83196141 + B2_Mm2 SINE B2 1 186 -9 9 896 373 231 187 0 chr9 40880031 40880122 -83196050 - PB1D7 SINE Alu -10 110 3 9 896 303 85 0 0 chr9 40880161 40880208 -83195964 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 9 896 209 205 0 0 chr9 40880695 40880734 -83195438 + CT-rich Low_complexity Low_complexity 1 39 0 9 896 302 233 58 11 chr9 40880737 40880824 -83195348 - HAL1-3A_ME LINE L1 -493 2365 2275 9 896 219 125 0 0 chr9 40880883 40880923 -83195249 + (TGGGGG)n Simple_repeat Simple_repeat 1 40 0 9 896 187 295 192 8 chr9 40881594 40881724 -83194448 + MIR3 SINE MIR 43 196 -12 9 896 951 78 0 0 chr9 40882206 40882335 -83193837 + (TTTC)n Simple_repeat Simple_repeat 1 129 0 9 896 288 200 0 0 chr9 40882335 40882395 -83193777 + CT-rich Low_complexity Low_complexity 3 62 0 9 896 1013 224 23 23 chr9 40882706 40882921 -83193251 + B3 SINE B2 1 215 -1 9 896 1190 189 14 5 chr9 40883134 40883341 -83192831 - B3 SINE B2 -6 210 2 9 896 370 326 52 0 chr9 40883469 40883604 -83192568 + MLT1A LTR MaLR 1 142 -232 9 896 219 69 0 0 chr9 40883804 40883833 -83192339 + (A)n Simple_repeat Simple_repeat 1 29 0 9 896 371 245 13 2 chr9 40883988 40884077 -83192095 + ID2 SINE ID 3 91 -61 9 896 330 98 0 0 chr9 40884718 40884769 -83191403 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 896 946 294 46 51 chr9 40884811 40885227 -83190945 + MTE2a LTR MaLR 9 419 0 9 896 388 300 20 35 chr9 40887357 40887509 -83188663 - MIRc SINE MIR -18 190 40 9 896 483 299 0 0 chr9 40887939 40888056 -83188116 - PB1D10 SINE Alu 0 117 1 9 896 513 0 0 0 chr9 40888196 40888253 -83187919 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 896 216 0 0 0 chr9 40888253 40888276 -83187896 + (GA)n Simple_repeat Simple_repeat 1 24 0 9 896 539 231 0 90 chr9 40888743 40888876 -83187296 + RSINE1 SINE B4 2 122 -43 9 896 404 104 15 0 chr9 40888879 40888946 -83187226 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 896 422 283 30 38 chr9 40889763 40889895 -83186277 + RSINE1 SINE B4 4 134 -31 9 896 216 0 0 0 chr9 40890059 40890083 -83186089 + (TATG)n Simple_repeat Simple_repeat 1 24 0 9 896 412 296 7 7 chr9 40890840 40890986 -83185186 + (CA)n Simple_repeat Simple_repeat 1 146 0 9 896 261 197 70 44 chr9 40891265 40891373 -83184799 - MIRm SINE MIR -76 192 83 9 896 906 163 7 0 chr9 40891437 40891578 -83184594 - B1_Mus2 SINE Alu -1 146 5 9 896 207 0 0 0 chr9 40891704 40891727 -83184445 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 896 438 20 0 0 chr9 40891728 40891779 -83184393 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 896 550 265 94 0 chr9 40891876 40892057 -83184115 - ID_B1 SINE B4 -25 199 2 9 896 396 59 0 0 chr9 40893512 40893563 -83182609 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 896 731 221 7 0 chr9 40893582 40893718 -83182454 - RSINE1 SINE B4 -26 139 3 9 896 22 0 0 0 chr9 40894283 40894305 -83181867 + AT_rich Low_complexity Low_complexity 1 22 0 1 897 606 248 20 7 chr9 40894540 40894686 -83181486 - B1F SINE Alu -1 148 1 1 897 182 288 76 0 chr9 40895237 40895303 -83180869 - MIRc SINE MIR -116 152 82 1 897 1102 69 14 0 chr9 40895439 40895583 -83180589 + MTB LTR MaLR 1 146 -254 1 897 351 265 35 2 chr9 40895589 40895683 -83180489 + B4A SINE B4 1 100 -192 1 897 500 245 0 36 chr9 40895792 40895902 -83180270 + PB1D9 SINE Alu 2 107 -13 1 897 213 39 0 0 chr9 40895906 40895932 -83180240 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 897 182 321 19 0 chr9 40896568 40896621 -83179551 + L2b LINE L2 2543 2596 -823 1 897 192 385 66 20 chr9 40897084 40897235 -83178937 + L2b LINE L2 3198 3355 -20 1 897 422 88 15 0 chr9 40897305 40897373 -83178799 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 897 252 0 0 0 chr9 40897403 40897431 -83178741 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 897 354 272 115 10 chr9 40897431 40897535 -83178637 - RSINE1 SINE B4 -41 124 10 1 897 1343 85 11 0 chr9 40897729 40897905 -83178267 + B2_Mm1t SINE B2 2 179 -14 1 897 333 145 0 40 chr9 40897937 40898004 -83178168 + B2_Mm2 SINE B2 47 109 -107 1 897 378 0 0 0 chr9 40898019 40898061 -83178111 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 897 474 18 0 0 chr9 40898745 40898800 -83177372 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 897 538 234 56 84 chr9 40899067 40899282 -83176890 + ID_B1 SINE B4 2 210 -14 1 897 242 196 22 0 chr9 40899284 40899330 -83176842 + GA-rich Low_complexity Low_complexity 2 48 0 1 897 533 297 47 143 chr9 40901278 40901506 -83174666 + B4A SINE B4 2 224 -68 1 897 525 168 221 0 chr9 40901506 40901619 -83174553 + B1_Mur1 SINE Alu 3 140 -9 1 897 533 297 47 143 chr9 40901619 40901712 -83174460 + B4A SINE B4 225 292 0 1 897 610 279 11 0 chr9 40902355 40902534 -83173638 - B3A SINE B2 -16 182 2 1 897 328 366 123 22 chr9 40902550 40902729 -83173443 - MER115 DNA Tip100 -63 630 434 1 897 331 345 39 22 chr9 40903688 40903866 -83172306 - L1MC5 LINE L1 -54 7907 7727 1 897 619 276 26 0 chr9 40903909 40904065 -83172107 - RSINE1 SINE B4 -1 164 5 1 897 396 0 0 0 chr9 40904212 40904256 -83171916 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 897 324 228 76 42 chr9 40904669 40904788 -83171384 + RSINE1 SINE B4 43 165 0 1 897 180 0 0 0 chr9 40905812 40905832 -83170340 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 897 264 152 0 0 chr9 40905858 40905924 -83170248 + A-rich Low_complexity Low_complexity 2 67 0 1 897 190 282 180 31 chr9 40907795 40907923 -83168249 + MIR SINE MIR 68 214 -48 1 897 303 28 0 0 chr9 40908661 40908697 -83167475 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 897 375 317 50 103 chr9 40908753 40909055 -83167117 - B4A SINE B4 -6 286 1 1 897 536 272 146 5 chr9 40909094 40909286 -83166886 + ID_B1 SINE B4 4 222 -2 1 897 916 274 10 5 chr9 40909608 40909686 -83166486 + ID SINE ID 2 80 -144 1 897 366 326 33 53 chr9 40909686 40909838 -83166334 + B1F SINE Alu 1 149 0 1 897 354 304 87 8 chr9 40910178 40910304 -83165868 + L2a LINE L2 3282 3417 -9 1 897 400 248 107 107 chr9 40910330 40910479 -83165693 - B1F SINE Alu 0 149 1 1 897 816 237 56 40 chr9 40910479 40910561 -83165611 - ID SINE ID -137 87 3 1 897 192 351 10 50 chr9 40911242 40911341 -83164831 - L2 LINE L2 -1034 2385 2291 1 897 573 294 25 70 chr9 40911355 40911556 -83164616 + ID_B1 SINE B4 4 195 -29 1 897 202 307 91 0 chr9 40912827 40912915 -83163257 - MIR SINE MIR -66 142 47 1 897 180 252 39 133 chr9 40914438 40914566 -83161606 + L3 LINE CR1 2513 2628 -1861 1 897 200 292 69 0 chr9 40915462 40915534 -83160638 - MIRc SINE MIR -63 205 129 1 897 182 278 9 182 chr9 40915716 40915826 -83160346 - MIRb SINE MIR -123 145 55 1 897 394 255 21 0 chr9 40917034 40917128 -83159044 - ID_B1 SINE B4 -45 179 84 1 897 210 349 56 23 chr9 40917132 40917224 -83158948 - MIRc SINE MIR -114 154 63 1 897 189 0 0 0 chr9 40918827 40918848 -83157324 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 897 339 113 0 0 chr9 40918848 40918900 -83157272 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 897 478 286 54 13 chr9 40918915 40919064 -83157108 - RSINE1 SINE B4 -8 157 3 1 897 1243 61 0 0 chr9 40920135 40920282 -83155890 + B1_Mus1 SINE Alu 2 148 0 1 897 626 299 0 0 chr9 40920296 40920443 -83155729 + B1F2 SINE Alu 1 147 -2 1 897 425 333 79 62 chr9 40921102 40921342 -83154830 + B4 SINE B4 27 270 -22 1 897 540 0 0 0 chr9 40921390 40921450 -83154722 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 897 592 234 47 0 chr9 40921574 40921702 -83154470 + B1_Mur2 SINE Alu 1 134 -15 1 897 204 261 0 0 chr9 40921702 40921767 -83154405 + GA-rich Low_complexity Low_complexity 2 66 0 1 897 1031 97 96 6 chr9 40923241 40923407 -83152765 + B2_Mm2 SINE B2 1 181 -14 1 897 467 77 330 14 chr9 40923473 40923582 -83152590 + B2_Mm2 SINE B2 47 189 -6 1 897 282 313 8 25 chr9 40923714 40923832 -83152340 - PB1D10 SINE Alu -1 116 1 1 897 280 311 112 18 chr9 40924539 40924709 -83151463 + MIRb SINE MIR 16 201 -67 1 897 481 229 0 10 chr9 40924866 40924963 -83151209 + PB1D10 SINE Alu 1 96 -21 1 897 249 211 0 0 chr9 40924965 40925022 -83151150 + GA-rich Low_complexity Low_complexity 1 57 0 1 897 192 179 0 0 chr9 40925039 40925078 -83151094 + A-rich Low_complexity Low_complexity 4 42 0 1 897 322 329 96 0 chr9 40925723 40925869 -83150303 - MIRb SINE MIR -72 196 37 1 897 180 284 148 0 chr9 40925873 40925961 -83150211 - MIR3 SINE MIR -50 158 58 1 897 561 15 0 0 chr9 40926553 40926619 -83149553 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 897 685 282 70 19 chr9 40927260 40927473 -83148699 + ID_B1 SINE B4 1 224 0 1 897 247 261 31 0 chr9 40927552 40927617 -83148555 - MT-int LTR MaLR -1009 89 23 1 897 616 239 22 7 chr9 40927637 40927772 -83148400 - B1_Mur2 SINE Alu -1 148 12 1 897 570 282 5 15 chr9 40927817 40927897 -83148275 + ID SINE ID 3 84 -208 1 897 390 270 8 34 chr9 40927897 40928016 -83148156 + PB1D10 SINE Alu 1 116 -1 1 897 339 25 0 0 chr9 40928451 40928491 -83147681 + (CAA)n Simple_repeat Simple_repeat 2 41 0 1 897 443 303 98 0 chr9 40928510 40928632 -83147540 + RSINE1 SINE B4 3 136 -29 1 897 273 98 0 0 chr9 40928638 40928679 -83147493 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 897 345 136 0 0 chr9 40928957 40929023 -83147149 + (TGAA)n Simple_repeat Simple_repeat 1 66 0 1 897 422 235 75 1 chr9 40929056 40929167 -83147005 - PB1D7 SINE Alu -2 125 2 1 897 191 281 115 0 chr9 40929415 40929511 -83146661 + MIRm SINE MIR 156 262 -14 1 897 378 0 0 0 chr9 40929600 40929642 -83146530 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 897 384 138 30 30 chr9 40930572 40930639 -83145533 - ID4_ SINE ID -12 71 5 1 897 334 313 45 58 chr9 40930837 40931040 -83145132 + MIR3 SINE MIR 7 198 -10 1 897 202 237 30 20 chr9 40931865 40931964 -83144208 + (TTATA)n Simple_repeat Simple_repeat 2 101 0 1 897 292 311 169 53 chr9 40932119 40932425 -83143747 + ORR1E LTR MaLR 39 353 -14 1 897 406 206 14 0 chr9 40932792 40932865 -83143307 - ID4 SINE ID -8 75 2 1 897 228 265 0 0 chr9 40932987 40933036 -83143136 - MTEa LTR MaLR -15 364 316 1 897 311 296 29 39 chr9 40933440 40933452 -83142720 + B1F1 SINE Alu 42 142 -7 1 897 392 259 0 56 chr9 40933452 40933542 -83142630 + ID_B1 SINE B4 133 217 -7 1 897 1452 237 65 35 chr9 40933732 40934099 -83142073 + MTE2a LTR MaLR 2 379 0 1 897 342 275 22 0 chr9 40934310 40934401 -83141771 - ID_B1 SINE B4 0 224 132 1 897 331 279 91 23 chr9 40934401 40934442 -83141730 - B1F SINE Alu 0 149 9 1 897 256 327 136 19 chr9 40935278 40935440 -83140732 + MIRc SINE MIR 87 267 -1 1 897 254 294 43 11 chr9 40935505 40935598 -83140574 - MLT1A1 LTR MaLR 0 408 313 1 897 1067 102 0 0 chr9 40935611 40935748 -83140424 + B1_Mus1 SINE Alu 2 138 -10 1 897 1083 106 0 0 chr9 40935749 40935909 -83140263 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 1 897 1113 101 0 0 chr9 40936144 40936292 -83139880 - B1_Mus1 SINE Alu 0 148 1 1 897 1124 137 100 29 chr9 40936449 40936659 -83139513 + URR1B DNA MER1_type 1 225 0 1 897 382 185 0 3 chr9 40936782 40936853 -83139319 - B1F SINE Alu -3 146 45 1 897 963 231 215 18 chr9 40936857 40937192 -83138980 - MTD LTR MaLR -14 405 5 1 897 318 247 22 45 chr9 40937307 40937321 -83138851 + MT2B2 LTR ERVL 155 166 -418 1 897 452 274 69 0 chr9 40937321 40937423 -83138749 + PB1D10 SINE Alu 2 110 -7 1 897 330 333 86 13 chr9 40937455 40937607 -83138565 - RSINE1 SINE B4 0 165 3 1 897 185 160 160 0 chr9 40937631 40937681 -83138491 + MIR3 SINE MIR 9 66 -142 1 897 189 0 0 0 chr9 40938076 40938097 -83138075 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 897 201 100 0 48 chr9 40938163 40938205 -83137967 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1 897 367 194 173 18 chr9 40938507 40938617 -83137555 - B4A SINE B4 -20 272 146 1 897 497 259 19 0 chr9 40939060 40939168 -83137004 + B1F SINE Alu 40 149 0 1 897 423 290 23 15 chr9 40939381 40939514 -83136658 + B1F SINE Alu 5 138 -11 1 897 465 278 171 10 chr9 40940057 40940250 -83135922 + MER58B DNA MER1_type 117 340 -1 1 897 544 225 0 9 chr9 40940506 40940618 -83135554 - PB1D9 SINE Alu -8 112 2 1 897 658 98 0 29 chr9 40940651 40940788 -83135384 + (TCTCTG)n Simple_repeat Simple_repeat 6 138 0 1 897 459 0 0 0 chr9 40940785 40940836 -83135336 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 897 784 109 0 8 chr9 40940836 40940956 -83135216 - B1_Mus1 SINE Alu -19 129 11 1 897 667 251 19 92 chr9 40942386 40942592 -83133580 + B3 SINE B2 2 192 -3 1 897 247 264 207 0 chr9 40942707 40942794 -83133378 + PB1D10 SINE Alu 13 117 0 1 897 252 229 21 0 chr9 40942837 40942885 -83133287 + ID_B1 SINE B4 123 171 -53 1 897 482 126 236 32 chr9 40942925 40943048 -83133124 + B1_Mur3 SINE Alu 1 148 -1 1 897 240 272 129 52 chr9 40943117 40943272 -83132900 + MLT1A LTR MaLR 208 374 0 1 897 211 205 68 146 chr9 40943336 40943439 -83132733 + L2c LINE L2 3291 3385 -2 1 897 186 103 0 0 chr9 40943644 40943673 -83132499 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 897 227 266 24 37 chr9 40943786 40943868 -83132304 + RLTR13D5 LTR ERVK 3 83 -940 1 897 601 114 45 0 chr9 40944316 40944404 -83131768 + B1_Mus2 SINE Alu 54 145 -2 1 897 260 125 20 20 chr9 40944652 40944701 -83131471 + L1M3de LINE L1 863 911 -5742 1 897 254 328 30 0 chr9 40945425 40945492 -83130680 + ID4 SINE ID 5 73 -10 1 897 570 79 0 0 chr9 40945495 40945584 -83130588 + (TCTCTG)n Simple_repeat Simple_repeat 1 89 0 1 897 228 111 0 0 chr9 40945585 40945621 -83130551 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 897 246 279 119 37 chr9 40945764 40945898 -83130274 + L2c LINE L2 3242 3386 -1 1 897 984 272 11 10 chr9 40945991 40946217 -83129955 + ID_B1 SINE B4 16 245 -47 1 897 411 194 0 0 chr9 40948041 40948108 -83128064 - ID4 SINE ID -15 68 2 1 897 521 235 8 34 chr9 40948135 40948254 -83127918 - PB1D10 SINE Alu -1 116 1 1 897 21 0 0 0 chr9 40948261 40948282 -83127890 + AT_rich Low_complexity Low_complexity 1 21 0 1 897 540 0 0 0 chr9 40948485 40948545 -83127627 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 897 407 207 46 0 chr9 40948810 40948897 -83127275 + ID_B1 SINE B4 134 224 0 1 897 275 352 137 25 chr9 40948979 40949183 -83126989 - MIR SINE MIR -12 250 24 1 897 372 22 0 0 chr9 40949358 40949403 -83126769 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 897 948 112 49 7 chr9 40949648 40949792 -83126380 + B1_Mur4 SINE Alu 1 150 0 1 897 1463 63 21 0 chr9 40949792 40949981 -83126191 + B2_Mm2 SINE B2 2 194 -1 1 897 566 175 138 0 chr9 40950256 40950416 -83125756 + Lx9 LINE L1 7417 7598 -46 1 897 2134 133 95 19 chr9 40950420 40950788 -83125384 - MTC LTR MaLR -8 413 18 1 897 244 288 24 36 chr9 40950882 40950965 -83125207 + ID4 SINE ID 1 82 -1 1 897 326 345 35 21 chr9 40951009 40951154 -83125018 + MIRb SINE MIR 114 260 -8 1 897 1044 135 7 0 chr9 40951193 40951341 -83124831 + B1_Mur4 SINE Alu 2 150 0 1 897 558 336 176 20 chr9 40951443 40951795 -83124377 + MLT1D LTR MaLR 2 408 -97 1 897 532 223 62 35 chr9 40951795 40951939 -83124233 + B1F SINE Alu 1 148 -1 1 897 3022 148 62 18 chr9 40952427 40952978 -83123194 + RMER15 LTR ERVL 1 575 0 1 897 2974 165 9 21 chr9 40953095 40953621 -83122551 - RLTR28 LTR ERVL -4 520 1 1 897 272 143 155 35 chr9 40953836 40953894 -83122278 + PB1D7 SINE Alu 53 117 -3 1 897 619 143 9 0 chr9 40953949 40954054 -83122118 - RLTR28B LTR ERVL -292 189 84 1 897 247 86 0 0 chr9 40954665 40954700 -83121472 - PB1D10 SINE Alu -24 93 59 1 897 871 251 15 10 chr9 40954669 40954866 -83121306 - ID_B1 SINE B4 -25 199 2 1 897 444 91 0 0 chr9 40956114 40956180 -83119992 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 897 899 263 96 22 chr9 40956184 40956456 -83119716 - B4 SINE B4 0 292 1 1 897 321 26 0 0 chr9 40957410 40957448 -83118724 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 897 356 340 9 19 chr9 40957893 40958001 -83118171 + PB1 SINE Alu 1 107 -20 1 897 400 359 27 27 chr9 40958704 40958850 -83117322 + ID_B1 SINE B4 78 223 -1 1 897 424 105 13 13 chr9 40958851 40958928 -83117244 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 897 231 36 0 0 chr9 40958928 40958956 -83117216 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 897 319 329 63 42 chr9 40958974 40959117 -83117055 + L1ME1 LINE L1 5888 6033 -146 1 897 486 0 0 0 chr9 40960330 40960384 -83115788 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 897 835 218 122 0 chr9 40960484 40960672 -83115500 + B3 SINE B2 6 216 0 1 897 445 245 83 19 chr9 40960699 40960807 -83115365 + ID_B1 SINE B4 110 224 0 1 897 381 43 0 0 chr9 40961834 40961881 -83114291 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1 897 412 319 0 62 chr9 40962028 40962172 -83114000 + ID_B1 SINE B4 88 222 -2 1 897 189 74 0 0 chr9 40962174 40962201 -83113971 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 897 543 121 165 68 chr9 40962474 40962607 -83113565 - B1_Mus1 SINE Alu 0 148 3 1 897 2513 4 0 0 chr9 40962650 40962924 -83113248 + L1Md_A LINE L1 6309 6582 0 1 897 32 26 0 0 chr9 40962925 40962964 -83113208 + AT_rich Low_complexity Low_complexity 1 39 0 1 897 326 215 2 14 chr9 40963042 40963131 -83113041 + L1MA6 LINE L1 5784 5872 -428 1 897 402 295 0 11 chr9 40963132 40963221 -83112951 + RSINE1 SINE B4 30 117 -48 1 897 363 44 0 0 chr9 40963231 40963276 -83112896 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 897 378 0 0 0 chr9 40963276 40963317 -83112855 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 897 269 297 169 41 chr9 40963448 40963620 -83112552 + MLT1E2 LTR MaLR 434 627 0 1 897 353 330 27 20 chr9 40963677 40963804 -83112368 + MIRb SINE MIR 35 158 -110 1 897 201 100 23 91 chr9 40965851 40965895 -83110277 + SUBTEL_sa Satellite Satellite 13 53 -121 1 897 264 272 9 64 chr9 40966289 40966399 -83109773 + GA-rich Low_complexity Low_complexity 2 105 0 1 897 195 129 0 0 chr9 40966707 40966738 -83109434 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1 897 189 379 21 35 chr9 40966740 40966885 -83109287 - MIRb SINE MIR -10 258 116 1 897 369 0 0 0 chr9 40967808 40967849 -83108323 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 897 516 228 158 0 chr9 40967865 40967979 -83108193 - RSINE1 SINE B4 -27 138 7 1 897 1130 208 30 0 chr9 40968023 40968225 -83107947 + B3 SINE B2 4 211 -5 1 897 474 33 0 0 chr9 40968318 40968378 -83107794 + (TCTG)n Simple_repeat Simple_repeat 2 61 0 1 897 329 273 20 29 chr9 40968379 40968481 -83107691 - PB1D10 SINE Alu -6 111 11 1 897 192 135 0 0 chr9 40968944 40968981 -83107191 + (TGGGGG)n Simple_repeat Simple_repeat 6 42 0 1 897 867 102 0 0 chr9 40969218 40969346 -83106826 + (TCC)n Simple_repeat Simple_repeat 2 129 0 1 897 459 146 72 10 chr9 40969382 40969479 -83106693 - PB1D10 SINE Alu -11 106 4 1 897 450 83 0 0 chr9 40969996 40970068 -83106104 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 897 586 291 43 86 chr9 40970085 40970389 -83105783 - B4A SINE B4 0 292 2 1 897 2388 158 26 14 chr9 40970452 40970868 -83105304 + MTC LTR MaLR 1 421 0 1 897 555 16 0 0 chr9 40971044 40971108 -83105064 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 897 225 330 75 69 chr9 40971268 40971574 -83104598 + LTR73 LTR ERV1 17 324 -248 1 897 219 392 20 10 chr9 40971681 40971747 -83104425 - RSINE1 SINE B4 -36 129 62 1 897 3620 38 28 5 chr9 40971747 40972173 -83103999 - RLTR10C LTR ERVK 0 436 1 1 897 219 392 20 10 chr9 40972173 40972204 -83103968 - RSINE1 SINE B4 -104 61 31 1 897 590 270 22 14 chr9 40972235 40972374 -83103798 - B1F SINE Alu 0 149 10 1 897 397 318 27 91 chr9 40972374 40972417 -83103755 - ID_B1 SINE B4 0 219 50 1 897 1136 101 0 20 chr9 40972975 40973126 -83103046 + B1_Mus1 SINE Alu 1 148 0 1 897 614 217 0 77 chr9 40973236 40973252 -83102920 + ID_B1 SINE B4 82 221 0 1 897 713 199 44 0 chr9 40973252 40973388 -83102784 + B1F SINE Alu 7 148 -1 1 897 716 177 15 23 chr9 40973403 40973550 -83102622 + B1F2 SINE Alu 3 148 -1 1 897 254 273 71 102 chr9 40973422 40973618 -83102554 - YREP_Mm Unknown Unknown -1517 295 106 1 897 243 0 0 0 chr9 40973734 40973761 -83102411 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 897 29 70 0 0 chr9 40973761 40973818 -83102354 + AT_rich Low_complexity Low_complexity 1 57 0 1 897 550 309 45 19 chr9 40973895 40974162 -83102010 - B4A SINE B4 -18 274 1 1 897 211 172 133 33 chr9 40974423 40974483 -83101689 + PB1D10 SINE Alu 49 114 -3 1 897 311 0 0 25 chr9 40974696 40974736 -83101436 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 1 897 1458 0 0 0 chr9 40975359 40975521 -83100651 + (GGGAA)n Simple_repeat Simple_repeat 3 164 0 1 897 601 198 9 0 chr9 40975536 40975642 -83100530 + B1F2 SINE Alu 18 124 -25 1 897 603 221 130 19 chr9 40976058 40976219 -83099953 - B3 SINE B2 -6 210 32 1 897 346 15 43 43 chr9 40976300 40976369 -83099803 + (TTTTTG)n Simple_repeat Simple_repeat 1 69 0 1 897 777 243 60 46 chr9 40976652 40976695 -83099477 + ID SINE ID 1 36 -188 1 897 2304 170 2 67 chr9 40976695 40977116 -83099056 - ORR1B1 LTR MaLR 0 394 1 1 897 777 243 60 46 chr9 40977116 40977288 -83098884 + ID_B1 SINE B4 37 219 -5 1 897 254 229 0 14 chr9 40977297 40977368 -83098804 + GA-rich Low_complexity Low_complexity 1 70 0 1 897 481 121 85 32 chr9 40977477 40977571 -83098601 + B1_Mus2 SINE Alu 29 127 -20 1 897 282 130 0 129 chr9 40977569 40977631 -83098541 + B1_Mur3 SINE Alu 89 142 -7 1 897 372 371 50 22 chr9 40978473 40978652 -83097520 - MARNA DNA Mariner -396 190 7 1 897 851 225 51 41 chr9 40978754 40978949 -83097223 - B3A SINE B2 -1 197 1 1 897 275 358 87 13 chr9 40978957 40979107 -83097065 - MIRb SINE MIR -54 214 50 1 897 1105 165 140 9 chr9 40979598 40979812 -83096360 + RMER15 LTR ERVL 4 245 -330 1 897 2723 107 172 8 chr9 40979814 40980395 -83095777 - Lx2 LINE L1 -85 6912 6237 1 897 360 111 0 0 chr9 40980654 40980708 -83095464 + (CGGGG)n Simple_repeat Simple_repeat 1 54 0 1 897 428 18 18 0 chr9 40980827 40980882 -83095290 - B1_Mm SINE Alu -1 146 91 1 897 959 246 73 25 chr9 40981555 40981884 -83094288 + MTD LTR MaLR 65 402 -17 1 897 204 309 136 0 chr9 40982664 40982745 -83093427 + MIRm SINE MIR 120 211 -65 1 897 284 250 114 30 chr9 40982989 40983026 -83093146 - B1_Mur3 SINE Alu -6 143 103 1 897 304 262 25 0 chr9 40983026 40983106 -83093066 - ID4_ SINE ID 0 83 2 1 897 320 166 133 0 chr9 40983106 40983200 -83092972 - B1F2 SINE Alu 0 120 1 1 897 405 0 0 0 chr9 40983434 40983479 -83092693 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 897 468 0 0 0 chr9 40983479 40983530 -83092642 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 897 207 88 0 0 chr9 40983874 40983908 -83092264 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 897 1367 87 32 0 chr9 40983941 40984126 -83092046 - B2_Mm2 SINE B2 -3 192 2 1 897 344 148 0 0 chr9 40984181 40984235 -83091937 - ORR1B2 LTR MaLR -1 366 313 1 897 891 139 0 0 chr9 40984232 40984361 -83091811 - B1_Mus1 SINE Alu -1 147 19 1 897 1919 161 29 26 chr9 40984342 40984687 -83091485 - ORR1B2 LTR MaLR -21 346 1 1 897 2247 146 82 8 chr9 40984969 40985336 -83090836 - ORR1B1 LTR MaLR 0 394 1 1 897 276 274 79 40 chr9 40985347 40985423 -83090749 + PB1D10 SINE Alu 13 91 -26 1 897 348 91 0 43 chr9 40985433 40985502 -83090670 + (GGGGA)n Simple_repeat Simple_repeat 1 66 0 1 897 189 0 0 0 chr9 40985497 40985518 -83090654 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 897 1273 41 0 0 chr9 40985691 40985838 -83090334 + B1_Mm SINE Alu 1 147 0 1 897 201 94 0 0 chr9 40985840 40985872 -83090300 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 897 27 0 0 0 chr9 40985874 40985901 -83090271 + AT_rich Low_complexity Low_complexity 1 27 0 1 897 439 307 146 0 chr9 40986206 40986343 -83089829 - RSINE1 SINE B4 -8 157 1 1 897 840 193 0 0 chr9 40986374 40986509 -83089663 + B1_Mus1 SINE Alu 2 136 -12 1 897 249 57 0 0 chr9 40986510 40986545 -83089627 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 897 439 235 83 8 chr9 40986581 40986714 -83089458 + B1F SINE Alu 5 147 -2 1 897 479 183 13 6 chr9 40986789 40987102 -83089070 + (CAGAGA)n Simple_repeat Simple_repeat 1 315 0 1 897 209 57 0 28 chr9 40987135 40987171 -83089001 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 897 381 292 35 0 chr9 40987728 40987841 -83088331 - PB1D10 SINE Alu 0 117 1 1 897 534 57 0 0 chr9 40987886 40987956 -83088216 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 897 277 269 38 71 chr9 40987958 40988142 -83088030 - RMER17D LTR ERVK -525 364 187 1 897 311 291 91 42 chr9 40988138 40988303 -83087869 + MLT1A1 LTR MaLR 28 200 -208 1 897 267 284 27 0 chr9 40988310 40988384 -83087788 + CT-rich Low_complexity Low_complexity 3 78 0 1 897 863 239 27 59 chr9 40988394 40988616 -83087556 - ID_B1 SINE B4 -9 215 1 1 897 263 267 22 55 chr9 40988618 40988709 -83087463 - PB1D7 SINE Alu 0 120 33 1 897 257 365 54 31 chr9 40988681 40988749 -83087423 - ID_B1 SINE B4 -83 141 9 1 897 257 306 16 0 chr9 40988749 40988811 -83087361 - ID4_ SINE ID -12 71 9 1 897 1091 268 10 7 chr9 40988850 40989143 -83087029 - Lx5 LINE L1 -653 6397 6104 1 897 939 259 20 14 chr9 40989142 40989526 -83086646 + Lx5 LINE L1 6455 6886 -574 1 897 367 297 79 0 chr9 40989526 40989627 -83086545 - B3A SINE B2 -84 114 6 1 897 222 37 0 0 chr9 40990305 40990332 -83085840 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 897 180 226 0 0 chr9 40990987 40991049 -83085123 + (CCA)n Simple_repeat Simple_repeat 3 64 0 1 897 396 299 123 7 chr9 40991141 40991296 -83084876 + ID_B1 SINE B4 13 185 -39 1 897 21 57 0 0 chr9 40991489 40991524 -83084648 + AT_rich Low_complexity Low_complexity 1 35 0 1 897 442 294 59 0 chr9 40991551 40991687 -83084485 - B1F1 SINE Alu -5 144 1 1 897 578 333 7 0 chr9 40992826 40992973 -83083199 + RSINE1 SINE B4 1 148 -17 1 897 21 0 0 0 chr9 40993009 40993030 -83083142 + AT_rich Low_complexity Low_complexity 1 21 0 1 897 364 302 8 57 chr9 40993054 40993073 -83083099 - PB1D10 SINE Alu 0 117 105 1 897 423 0 0 0 chr9 40993073 40993120 -83083052 + (TTAG)n Simple_repeat Simple_repeat 2 48 0 1 897 364 302 8 57 chr9 40993120 40993223 -83082949 - PB1D10 SINE Alu -13 104 1 1 897 274 289 144 12 chr9 40993362 40993591 -83082581 - MIRb SINE MIR -2 266 2 1 897 445 291 43 29 chr9 40993724 40993862 -83082310 - B1F2 SINE Alu 0 149 10 1 897 876 265 9 9 chr9 40993886 40994103 -83082069 - ID_B1 SINE B4 -5 219 3 1 897 237 116 14 28 chr9 40994114 40994185 -83081987 + T-rich Low_complexity Low_complexity 2 71 0 1 897 185 0 0 39 chr9 40994771 40994797 -83081375 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 1 897 575 314 9 76 chr9 40994822 40995032 -83081140 + ID_B1 SINE B4 29 224 0 1 897 357 131 0 0 chr9 40995036 40995097 -83081075 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 1 897 393 282 12 0 chr9 40995460 40995557 -83080615 + ID2 SINE ID 1 98 -54 1 897 443 267 104 0 chr9 40996204 40996339 -83079833 + B1_Mur1 SINE Alu 1 149 0 1 897 345 292 107 8 chr9 40996397 40996518 -83079654 + ID_B1 SINE B4 84 216 -8 1 897 287 233 17 0 chr9 40996517 40996529 -83079643 + ID SINE ID 70 82 -142 1 897 311 197 167 0 chr9 40996529 40996595 -83079577 + B1_Mur3 SINE Alu 1 77 -72 1 897 447 52 0 0 chr9 40996798 40996856 -83079316 + (TTCA)n Simple_repeat Simple_repeat 2 59 0 1 897 558 326 21 32 chr9 40996866 40997053 -83079119 - ID_B1 SINE B4 0 224 40 1 897 333 0 0 0 chr9 40997204 40997241 -83078931 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 897 279 0 0 0 chr9 40997594 40997625 -83078547 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 897 834 290 11 0 chr9 40997653 40997836 -83078336 + ID_B1 SINE B4 3 187 -37 1 897 600 14 0 0 chr9 40997857 40997926 -83078246 + (CAAAC)n Simple_repeat Simple_repeat 1 69 0 1 897 399 322 95 95 chr9 40997936 40998409 -83077763 - MLT1H LTR MaLR -59 490 18 1 897 267 314 140 77 chr9 40998528 40998735 -83077437 + LTR82A LTR ERVL 490 709 -163 1 897 358 225 121 21 chr9 40998746 40998887 -83077285 + RLTR21 LTR ERVK 1098 1252 -320 1 897 460 273 20 59 chr9 40998887 40999039 -83077133 - B1F SINE Alu -3 146 1 1 897 306 0 0 0 chr9 40999050 40999084 -83077088 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 897 775 228 54 15 chr9 40999778 40999983 -83076189 - ID_B1 SINE B4 -7 217 5 1 897 1306 187 35 53 chr9 41000471 41000753 -83075419 - RLTR41 LTR ERV1 -2 444 168 1 897 1758 193 86 30 chr9 41001397 41001825 -83074347 + RLTR18 LTR ERVK 1 452 -164 2 897 748 158 29 0 chr9 41001827 41001966 -83074206 - MTC LTR MaLR -278 143 1 3 897 317 263 21 10 chr9 41002381 41002477 -83073695 + PB1D10 SINE Alu 20 116 -1 4 897 239 286 38 25 chr9 41002832 41002911 -83073261 + ID4 SINE ID 3 82 -1 5 897 273 119 0 0 chr9 41002915 41002957 -83073215 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 6 897 455 301 4 35 chr9 41003036 41003186 -83072986 - ID_B1 SINE B4 -1 223 82 7 897 404 277 26 0 chr9 41003202 41003335 -83072837 - B1F2 SINE Alu -7 142 6 8 897 714 105 0 0 chr9 41003601 41003715 -83072457 + (TG)n Simple_repeat Simple_repeat 2 115 0 9 897 46 0 0 0 chr9 41003744 41003790 -83072382 + AT_rich Low_complexity Low_complexity 1 46 0 1 897 261 180 0 39 chr9 41003857 41003909 -83072263 + ID4 SINE ID 13 62 -21 1 897 281 253 114 0 chr9 41004395 41004474 -83071698 - B3A SINE B2 -16 182 95 1 897 182 182 0 0 chr9 41004615 41004648 -83071524 + L2a LINE L2 3394 3426 0 1 897 1022 244 5 5 chr9 41004722 41004928 -83071244 - ID_B1 SINE B4 -17 207 2 1 897 729 255 10 36 chr9 41005055 41005074 -83071098 - B3A SINE B2 -6 192 177 1 897 2266 93 21 9 chr9 41005074 41005399 -83070773 + ORR1A4 LTR MaLR 1 329 0 1 897 729 255 10 36 chr9 41005399 41005574 -83070598 - B3A SINE B2 -22 176 4 1 897 284 0 28 0 chr9 41005848 41005884 -83070288 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 897 492 295 93 93 chr9 41006126 41006448 -83069724 + MER44A DNA MER2_type 3 324 -15 1 897 277 325 8 47 chr9 41007969 41008098 -83068074 + B4 SINE B4 17 140 -152 1 897 218 267 158 33 chr9 41008917 41009037 -83067135 - MIR3 SINE MIR -16 192 58 2 897 252 0 0 0 chr9 41009427 41009455 -83066717 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 897 1037 234 21 17 chr9 41009760 41009999 -83066173 + B4 SINE B4 1 240 -52 2 897 856 239 62 56 chr9 41010050 41010193 -83065979 - ORR1E LTR MaLR -2 357 218 2 897 585 40 55 31 chr9 41010193 41010321 -83065851 + (CA)n Simple_repeat Simple_repeat 2 132 0 2 897 856 239 62 56 chr9 41010321 41010532 -83065640 - ORR1E LTR MaLR -142 217 1 2 897 560 174 242 34 chr9 41011253 41011431 -83064741 - B3 SINE B2 0 216 2 2 897 347 261 17 69 chr9 41012198 41012371 -83063801 - RLTR11A2 LTR ERVK -41 412 249 2 897 239 253 0 11 chr9 41012378 41012466 -83063706 - RLTR11A2 LTR ERVK -167 286 200 2 897 457 234 40 98 chr9 41012434 41012727 -83063445 - RLTR11A2 LTR ERVK -191 262 1 2 897 1370 46 29 0 chr9 41012751 41012924 -83063248 + B2_Mm1t SINE B2 1 178 -15 2 897 648 0 0 0 chr9 41012924 41012996 -83063176 + (GAAA)n Simple_repeat Simple_repeat 4 75 0 2 897 430 214 127 22 chr9 41013075 41013209 -83062963 + MTD LTR MaLR 257 404 -15 2 897 338 283 17 17 chr9 41014618 41014733 -83061439 - PB1D10 SINE Alu -1 116 2 3 897 3050 207 79 54 chr9 41016233 41016423 -83059749 - Lx7 LINE L1 0 7696 7448 3 897 387 0 0 0 chr9 41016423 41016466 -83059706 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 897 3050 201 79 17 chr9 41016466 41016510 -83059662 - Lx7 LINE L1 -249 7447 7393 3 897 3065 50 42 5 chr9 41016510 41016892 -83059280 + MTA_Mm LTR MaLR 1 396 0 3 897 3050 201 79 17 chr9 41016892 41016918 -83059254 - Lx7 LINE L1 -304 7392 7359 3 897 180 0 0 0 chr9 41016918 41016938 -83059234 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 897 3050 201 79 17 chr9 41016938 41017498 -83058674 - Lx7 LINE L1 -338 7358 6778 3 897 645 149 0 0 chr9 41017815 41017929 -83058243 + (TA)n Simple_repeat Simple_repeat 1 114 0 3 897 195 69 0 0 chr9 41018106 41018135 -83058037 + (T)n Simple_repeat Simple_repeat 1 29 0 3 897 245 229 28 28 chr9 41019131 41019203 -83056969 + MLT1G1 LTR MaLR 500 571 -8 3 897 251 269 0 15 chr9 41019276 41019344 -83056828 - RSINE1 SINE B4 -97 68 2 3 897 493 286 15 31 chr9 41019509 41019639 -83056533 - RSINE1 SINE B4 0 165 38 3 897 363 336 0 0 chr9 41020034 41020141 -83056031 - PB1D10 SINE Alu -7 110 4 4 897 186 209 0 0 chr9 41020640 41020683 -83055489 + C-rich Low_complexity Low_complexity 1 43 0 4 897 1010 45 8 0 chr9 41021887 41022019 -83054153 + (TCTA)n Simple_repeat Simple_repeat 4 136 0 4 897 204 40 0 0 chr9 41022022 41022047 -83054125 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 4 897 464 284 120 35 chr9 41022098 41022357 -83053815 - B4A SINE B4 -11 281 1 4 897 527 179 78 39 chr9 41022364 41022504 -83053668 - ID_B1 SINE B4 -63 229 85 4 897 1197 48 7 0 chr9 41022518 41022664 -83053508 + B1_Mus2 SINE Alu 1 147 0 4 897 638 296 83 58 chr9 41023709 41023949 -83052223 - B4A SINE B4 -46 246 1 4 112 195 125 0 0 chr9 41025498 41025538 -83050634 + (T)n Simple_repeat Simple_repeat 1 40 0 4 898 3135 49 201 2 chr9 41025606 41026033 -83050139 + RLTR1B LTR ERV1 1 512 0 4 898 230 267 123 22 chr9 41027210 41027348 -83048824 + MLT1K LTR MaLR 394 545 -50 5 898 1972 137 35 0 chr9 41028347 41028662 -83047510 + ORR1A3 LTR MaLR 1 326 0 5 898 36 0 0 0 chr9 41028887 41028923 -83047249 + AT_rich Low_complexity Low_complexity 1 36 0 5 898 1078 110 0 0 chr9 41028923 41029069 -83047103 - B1_Mus1 SINE Alu 0 148 3 5 898 741 204 0 33 chr9 41029152 41029304 -83046868 + B1_Mur1 SINE Alu 2 148 -1 5 898 1662 286 108 28 chr9 41029325 41029980 -83046192 + Lx8 LINE L1 6764 7471 -2 5 898 739 264 3 18 chr9 41030060 41030266 -83045906 - B3A SINE B2 -15 201 2 5 898 253 176 13 13 chr9 41030285 41030360 -83045812 + GA-rich Low_complexity Low_complexity 2 76 0 5 898 624 327 77 56 chr9 41032473 41032940 -83043232 + MLT1D LTR MaLR 1 477 -28 5 898 876 137 20 0 chr9 41033486 41033632 -83042540 - B1_Mur4 SINE Alu 0 150 2 5 898 30 45 0 0 chr9 41034235 41034279 -83041893 + AT_rich Low_complexity Low_complexity 1 44 0 6 898 261 194 48 16 chr9 41036333 41036396 -83039776 + MTEa LTR MaLR 292 356 -23 6 898 202 231 19 19 chr9 41037814 41037867 -83038305 + CT-rich Low_complexity Low_complexity 6 58 0 6 898 257 319 234 27 chr9 41038001 41038185 -83037987 - MIRc SINE MIR -43 225 4 6 898 297 169 22 154 chr9 41038335 41038426 -83037746 + RSINE1 SINE B4 87 165 0 6 898 270 95 0 0 chr9 41038426 41038468 -83037704 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 898 230 276 40 0 chr9 41038491 41038567 -83037605 + (CATG)n Simple_repeat Simple_repeat 2 80 0 6 898 228 271 0 0 chr9 41038577 41038636 -83037536 - RSINE1 SINE B4 0 165 107 6 898 1194 73 0 0 chr9 41038704 41038883 -83037289 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 6 898 447 361 0 14 chr9 41039822 41039968 -83036204 - B1F SINE Alu -5 144 1 6 898 1937 289 66 30 chr9 41040044 41040878 -83035294 + L1MA9 LINE L1 5436 6299 -13 7 898 612 295 18 48 chr9 41040878 41041087 -83035085 + ID_B1 SINE B4 1 203 -21 7 898 252 0 0 0 chr9 41041087 41041115 -83035057 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 7 898 612 295 18 48 chr9 41041115 41041133 -83035039 + ID_B1 SINE B4 204 221 -3 7 898 260 278 19 126 chr9 41041249 41041347 -83034825 + B4A SINE B4 4 90 -202 7 898 339 273 45 0 chr9 41041347 41041435 -83034737 + RSINE1 SINE B4 2 93 -72 7 898 23 0 0 0 chr9 41042212 41042235 -83033937 + AT_rich Low_complexity Low_complexity 1 23 0 7 898 242 306 0 34 chr9 41042550 41042638 -83033534 + BC1_Mm scRNA scRNA 5 89 -63 7 898 1222 258 4 25 chr9 41042559 41042834 -83033338 + B4 SINE B4 14 282 -10 7 898 510 103 0 0 chr9 41042841 41042919 -83033253 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 898 351 65 0 0 chr9 41042919 41042965 -83033207 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 898 683 134 8 0 chr9 41043084 41043203 -83032969 + (TTCC)n Simple_repeat Simple_repeat 4 123 0 8 898 915 211 120 64 chr9 41043842 41044344 -83031828 + RMER4B LTR ERVK 1 574 -11 8 898 1352 153 28 0 chr9 41044945 41045161 -83031011 + URR1B DNA MER1_type 1 222 -3 8 898 707 236 90 49 chr9 41045884 41046151 -83030021 - MTEb LTR MaLR 0 379 102 8 898 2574 162 51 31 chr9 41047885 41048374 -83027798 - RLTR19 LTR ERVK 0 499 1 8 898 643 245 20 13 chr9 41048374 41048523 -83027649 - RSINE1 SINE B4 -13 152 3 8 898 181 328 0 16 chr9 41049057 41049119 -83027053 + MIR SINE MIR 91 151 -57 8 898 726 239 11 32 chr9 41050529 41050715 -83025457 + B3A SINE B2 1 182 -16 8 898 185 65 0 31 chr9 41051515 41051547 -83024625 + (TTA)n Simple_repeat Simple_repeat 3 33 0 8 898 564 15 0 0 chr9 41051563 41051628 -83024544 + (CTA)n Simple_repeat Simple_repeat 1 65 0 8 898 594 221 7 51 chr9 41051631 41051769 -83024403 - B1_Mur3 SINE Alu -17 132 1 9 898 345 342 77 21 chr9 41052136 41052330 -83023842 + MER58C DNA MER1_type 1 205 -10 9 898 1525 302 68 39 chr9 41052354 41052410 -83023762 - L1M2 LINE L1 -2168 4414 4359 9 898 354 61 0 0 chr9 41052410 41052459 -83023713 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 898 1525 302 68 39 chr9 41052459 41053490 -83022682 - L1M2 LINE L1 -2224 4358 3296 9 898 1041 156 10 20 chr9 41053506 41053703 -83022469 + URR1B DNA MER1_type 31 225 0 9 898 723 245 146 20 chr9 41053762 41054016 -83022156 - B4A SINE B4 -2 290 5 9 898 674 311 57 53 chr9 41054102 41054610 -83021562 - L1M2 LINE L1 -4232 2617 2151 9 898 22 0 0 0 chr9 41054610 41054632 -83021540 + AT_rich Low_complexity Low_complexity 1 22 0 9 898 192 77 0 0 chr9 41055691 41055717 -83020455 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 898 831 21 0 0 chr9 41055871 41055968 -83020204 + (GA)n Simple_repeat Simple_repeat 1 97 0 9 898 3517 171 40 37 chr9 41056594 41057282 -83018890 - RMER1B Other Other -27 1039 34 9 898 558 108 0 0 chr9 41057303 41057386 -83018786 + (CACCAT)n Simple_repeat Simple_repeat 5 87 0 1 898 21 36 0 0 chr9 41057884 41057912 -83018260 + AT_rich Low_complexity Low_complexity 1 28 0 1 898 284 241 51 0 chr9 41057975 41058054 -83018118 - B3A SINE B2 -114 84 2 1 898 452 106 21 21 chr9 41059233 41059329 -83016843 + (CCCCCT)n Simple_repeat Simple_repeat 3 98 0 1 898 255 233 0 16 chr9 41059636 41059697 -83016475 + CT-rich Low_complexity Low_complexity 1 60 0 1 898 243 270 171 48 chr9 41059713 41059818 -83016354 - MLT2C2 LTR ERVL -7 552 435 1 898 304 43 106 0 chr9 41059924 41059971 -83016201 - ORR1A4 LTR MaLR 0 329 278 1 898 1413 84 16 5 chr9 41059971 41060163 -83016009 - B2_Mm2 SINE B2 -1 194 1 1 898 2578 95 9 0 chr9 41060188 41060537 -83015635 - L1_Mus4 LINE L1 -12 6624 6273 1 898 752 113 0 0 chr9 41060537 41060643 -83015529 + L1_Mur2 LINE L1 5057 5162 -715 1 898 1593 116 0 131 chr9 41060643 41060971 -83015201 - ORR1A4 LTR MaLR -44 285 1 1 898 2347 148 127 2 chr9 41061213 41061687 -83014485 - RLTR20B2 LTR ERVK -22 538 6 1 898 524 210 94 31 chr9 41062933 41063061 -83013111 - B1_Mur1 SINE Alu 0 149 14 1 898 365 227 208 31 chr9 41063154 41063313 -83012859 + Lx4B LINE L1 6814 7058 0 1 898 545 295 90 75 chr9 41063347 41063503 -83012669 + MER63D DNA AcHobo 2 154 -907 1 898 527 237 32 157 chr9 41063503 41063688 -83012484 + RSINE1 SINE B4 3 164 -1 1 898 545 295 90 75 chr9 41063688 41063865 -83012307 + MER63D DNA AcHobo 155 340 -721 1 898 1381 12 12 0 chr9 41064356 41064523 -83011649 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 1 898 22 0 0 0 chr9 41064536 41064558 -83011614 + AT_rich Low_complexity Low_complexity 1 22 0 1 898 218 105 26 0 chr9 41065169 41065207 -83010965 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 898 198 0 0 0 chr9 41065207 41065229 -83010943 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 898 684 299 12 23 chr9 41065886 41066143 -83010029 + RMER5 LTR ERV1 250 503 -31 1 898 2032 303 26 42 chr9 41066315 41067049 -83009123 - Lx9 LINE L1 -174 7470 6749 1 898 754 231 167 9 chr9 41067066 41067293 -83008879 + Lx9 LINE L1 6466 6728 -916 1 898 335 289 52 17 chr9 41067844 41067960 -83008212 - PB1D7 SINE Alu 0 120 1 1 898 220 364 85 13 chr9 41068203 41068356 -83007816 - MIR3 SINE MIR -13 195 32 1 898 314 253 11 22 chr9 41068382 41068471 -83007701 - MTEa LTR MaLR -14 365 278 1 898 407 303 57 90 chr9 41069188 41069489 -83006683 - B4 SINE B4 0 292 2 1 898 248 278 92 34 chr9 41070419 41070538 -83005634 - L1ME3 LINE L1 -81 6081 5956 1 898 713 158 56 63 chr9 41070577 41070719 -83005453 + B1_Mur2 SINE Alu 1 141 -8 1 898 342 0 0 0 chr9 41070730 41070768 -83005404 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 898 240 242 76 0 chr9 41070805 41070871 -83005301 - L1ME2z LINE L1 -45 6399 6329 1 898 269 220 10 20 chr9 41070927 41071029 -83005143 - Lx9 LINE L1 -18 7626 7526 1 898 1170 231 5 0 chr9 41071114 41071330 -83004842 - Lx6 LINE L1 -360 7100 6884 1 898 602 89 0 11 chr9 41071338 41071429 -83004743 + (TCCCC)n Simple_repeat Simple_repeat 4 93 0 1 898 575 186 10 1 chr9 41071429 41071570 -83004602 - Lx6 LINE L1 -792 6904 6794 1 898 531 271 81 25 chr9 41071811 41072046 -83004126 - L1MB2 LINE L1 0 6171 5924 1 898 761 198 65 38 chr9 41072085 41072269 -83003903 - Lx4B LINE L1 -4 7054 6866 1 898 648 0 0 0 chr9 41072316 41072388 -83003784 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 898 447 237 0 10 chr9 41072388 41072486 -83003686 - PB1D9 SINE Alu -15 105 9 1 898 314 143 16 0 chr9 41073235 41073298 -83002874 + GA-rich Low_complexity Low_complexity 1 64 0 1 898 441 151 0 0 chr9 41073622 41073708 -83002464 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 898 663 262 57 28 chr9 41073889 41074066 -83002106 - B3 SINE B2 -11 184 3 1 898 1108 290 68 9 chr9 41074179 41074515 -83001657 - L1ME3 LINE L1 -425 5754 5396 1 898 705 24 0 0 chr9 41074515 41074598 -83001574 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 1 898 1108 290 68 9 chr9 41074598 41074700 -83001472 - L1ME3 LINE L1 -784 5395 5290 1 898 502 317 75 45 chr9 41074963 41075389 -83000783 - L1ME3 LINE L1 -1406 4740 4302 1 898 957 320 61 9 chr9 41075389 41075830 -83000342 - MLT1C LTR MaLR 0 467 4 1 898 236 321 24 0 chr9 41076150 41076234 -82999938 - MER96B DNA hAT -23 394 309 1 898 860 0 0 10 chr9 41076840 41076941 -82999231 + (TTC)n Simple_repeat Simple_repeat 2 101 0 1 898 1525 51 0 0 chr9 41076941 41077118 -82999054 - B2_Mm1t SINE B2 -16 177 1 1 898 720 236 26 41 chr9 41077300 41077494 -82998678 - B3A SINE B2 -3 195 5 1 898 203 171 0 0 chr9 41077602 41077637 -82998535 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 1 898 183 336 73 53 chr9 41077960 41078111 -82998061 + L2a LINE L2 3273 3426 0 1 898 188 289 79 0 chr9 41078738 41078814 -82997358 + MIRb SINE MIR 93 174 -94 1 898 728 235 47 51 chr9 41079760 41080115 -82996057 + MTD LTR MaLR 29 419 0 1 898 958 131 0 12 chr9 41080277 41080447 -82995725 + (GAA)n Simple_repeat Simple_repeat 3 170 0 1 898 259 85 0 41 chr9 41080621 41080670 -82995502 + (GGA)n Simple_repeat Simple_repeat 3 49 0 1 898 678 25 0 0 chr9 41081100 41081180 -82994992 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 898 255 61 0 0 chr9 41081185 41081218 -82994954 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 898 180 0 0 0 chr9 41081610 41081630 -82994542 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 1 898 549 88 0 0 chr9 41082510 41082590 -82993582 + (TTCA)n Simple_repeat Simple_repeat 4 83 0 1 898 619 145 103 0 chr9 41082808 41082925 -82993247 - B1_Mur4 SINE Alu -17 133 5 1 898 232 355 37 18 chr9 41083521 41083630 -82992542 - MER58B DNA MER1_type -116 225 115 1 898 370 306 70 37 chr9 41084551 41084738 -82991434 - B4A SINE B4 0 292 100 1 898 285 221 0 0 chr9 41084747 41084815 -82991357 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 898 219 338 128 27 chr9 41084815 41084883 -82991289 - RSINE1 SINE B4 0 165 2 1 898 289 288 0 12 chr9 41084883 41084964 -82991208 - B2_Mm2 SINE B2 -115 80 1 1 898 200 195 0 0 chr9 41085200 41085241 -82990931 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 898 2025 159 3 15 chr9 41085484 41085817 -82990355 - ORR1A4 LTR MaLR 0 329 1 1 898 595 175 0 112 chr9 41085817 41085978 -82990194 - ORR1A1 LTR MaLR -203 143 1 1 898 349 251 49 49 chr9 41086328 41086516 -82989656 + MTC LTR MaLR 44 231 -188 1 898 632 240 87 75 chr9 41086524 41086785 -82989387 + MTD LTR MaLR 172 405 -14 1 898 21 71 0 0 chr9 41087934 41087976 -82988196 + AT_rich Low_complexity Low_complexity 1 42 0 1 898 623 13 13 0 chr9 41088545 41088621 -82987551 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 898 562 338 43 13 chr9 41088643 41088874 -82987298 - B4A SINE B4 -52 240 3 1 898 318 67 0 0 chr9 41090058 41090103 -82986069 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 898 690 76 0 0 chr9 41090125 41090217 -82985955 - B1_Mm SINE Alu -55 92 1 1 898 1209 106 0 0 chr9 41090268 41090448 -82985724 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 898 960 127 7 0 chr9 41090706 41090848 -82985324 + B1_Mur3 SINE Alu 7 149 0 1 898 239 0 32 0 chr9 41090848 41090879 -82985293 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 898 4258 133 22 35 chr9 41090879 41091642 -82984530 - RMER6A LTR ERVK -3 753 1 1 898 1574 213 23 41 chr9 41091718 41092105 -82984067 - MT2A LTR ERVL -153 380 1 1 898 324 0 0 0 chr9 41092418 41092454 -82983718 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 898 230 276 0 44 chr9 41092954 41093045 -82983127 - ID_B1 SINE B4 -1 223 137 1 898 22 35 0 0 chr9 41094562 41094591 -82981581 + AT_rich Low_complexity Low_complexity 1 29 0 1 898 573 238 35 107 chr9 41094610 41094779 -82981393 - RSINE1 SINE B4 0 165 9 1 898 213 39 0 0 chr9 41094794 41094820 -82981352 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 898 214 265 0 29 chr9 41095037 41095107 -82981065 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 898 325 377 49 19 chr9 41095183 41095507 -82980665 - L1ME3A LINE L1 -41 6132 5799 1 898 955 209 23 23 chr9 41095991 41096207 -82979965 - B3 SINE B2 0 216 1 1 898 225 155 250 104 chr9 41096378 41096522 -82979650 - L1M5 LINE L1 -947 5199 5035 1 898 820 78 0 23 chr9 41096699 41096831 -82979341 + (GGA)n Simple_repeat Simple_repeat 3 131 0 1 898 653 228 22 98 chr9 41098082 41098306 -82977866 + B3A SINE B2 3 209 -7 1 898 306 0 0 0 chr9 41098675 41098709 -82977463 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 898 422 271 21 0 chr9 41098994 41099090 -82977082 + B4A SINE B4 16 113 -179 1 898 433 259 25 49 chr9 41099112 41099149 -82977023 + B4A SINE B4 170 205 -87 1 898 2411 121 36 23 chr9 41099149 41099538 -82976634 + ORR1B1 LTR MaLR 1 394 0 1 898 433 259 25 49 chr9 41099538 41099622 -82976550 + B4A SINE B4 206 288 -4 1 898 327 49 0 0 chr9 41099631 41099672 -82976500 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 898 218 286 60 0 chr9 41100213 41100297 -82975875 + CT-rich Low_complexity Low_complexity 5 93 0 1 898 218 303 49 29 chr9 41100332 41100434 -82975738 - B3A SINE B2 -7 191 88 1 898 413 299 51 19 chr9 41100432 41100589 -82975583 - MTE-int LTR MaLR -107 1473 1312 1 898 26 50 0 0 chr9 41100759 41100799 -82975373 + AT_rich Low_complexity Low_complexity 1 40 0 1 898 615 62 0 0 chr9 41100888 41100968 -82975204 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 898 476 292 53 33 chr9 41100970 41101122 -82975050 - B3A SINE B2 -42 156 2 1 898 602 134 0 8 chr9 41101221 41101349 -82974823 + (TC)n Simple_repeat Simple_repeat 2 128 0 1 898 1369 121 42 17 chr9 41101959 41102195 -82973977 - L1_Mus3 LINE L1 0 6638 6397 1 898 670 307 16 112 chr9 41102618 41102941 -82973231 - B4A SINE B4 0 292 1 2 898 576 0 0 0 chr9 41102999 41103063 -82973109 + (TTTA)n Simple_repeat Simple_repeat 3 66 0 2 898 2061 119 103 29 chr9 41103073 41103174 -82972998 - Lx LINE L1 -25 6629 6535 2 898 288 0 0 0 chr9 41103174 41103206 -82972966 + (CCCA)n Simple_repeat Simple_repeat 2 33 0 2 898 2061 119 103 29 chr9 41103206 41103484 -82972688 - Lx LINE L1 -120 6534 6224 2 898 19584 148 81 46 chr9 41104188 41107619 -82968553 - Lx7 LINE L1 -1242 6454 3012 2 898 195 42 0 0 chr9 41107619 41107643 -82968529 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 898 19584 138 89 53 chr9 41107643 41108285 -82967887 - Lx7 LINE L1 -2869 3011 2150 2 898 297 0 0 0 chr9 41108285 41108318 -82967854 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 898 19584 138 89 53 chr9 41108318 41108775 -82967397 - Lx7 LINE L1 -3731 2149 1746 2 898 7948 65 15 2 chr9 41108825 41109841 -82966331 - L1_Mus3 LINE L1 0 6638 5610 2 898 387 147 29 52 chr9 41110069 41110205 -82965967 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 2 898 525 16 0 0 chr9 41110895 41110957 -82965215 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 898 288 320 0 0 chr9 41112087 41112165 -82964007 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 898 474 275 133 33 chr9 41113016 41113257 -82962915 - L1MA4A LINE L1 -299 6001 5737 2 898 634 255 0 38 chr9 41113456 41113615 -82962557 - RSINE1 SINE B4 0 165 13 2 898 1339 221 120 11 chr9 41113718 41114084 -82962088 + MTD LTR MaLR 1 406 -13 2 898 786 271 38 0 chr9 41114100 41114336 -82961836 - L1MA4A LINE L1 -775 5368 5124 2 898 1021 280 108 71 chr9 41114687 41115060 -82961112 - L1MA8 LINE L1 -5 6286 5912 2 898 1014 282 53 0 chr9 41115060 41115326 -82960846 - B4A SINE B4 -12 280 1 2 898 1021 280 108 71 chr9 41115326 41115667 -82960505 - L1MA8 LINE L1 -380 5911 5546 2 898 1731 21 0 0 chr9 41117031 41117224 -82958948 + B2_Mm1a SINE B2 1 193 0 2 898 188 342 0 40 chr9 41117297 41117373 -82958799 - L2 LINE L2 -1048 2371 2299 2 898 818 284 14 19 chr9 41117730 41117938 -82958234 + ID_B1 SINE B4 18 224 0 2 898 228 225 0 0 chr9 41117938 41117978 -82958194 + polypurine Low_complexity Low_complexity 4 43 0 2 898 2110 280 16 21 chr9 41118184 41118761 -82957411 + Lx7 LINE L1 6797 7370 -326 2 898 34829 82 11 5 chr9 41118717 41124867 -82951305 - L1Md_F2 LINE L1 0 6582 392 2 898 22 0 0 0 chr9 41124874 41124896 -82951276 + AT_rich Low_complexity Low_complexity 1 22 0 2 898 860 335 78 4 chr9 41125005 41125503 -82950669 + L1MB8 LINE L1 5590 6124 -54 2 898 227 259 0 0 chr9 41125674 41125732 -82950440 - B4A SINE B4 -224 68 11 2 898 1585 240 47 6 chr9 41125995 41126359 -82949813 - MTE2a LTR MaLR 0 379 1 2 898 876 285 14 34 chr9 41126442 41126733 -82949439 + B4A SINE B4 1 285 -7 2 898 530 40 0 13 chr9 41126733 41126990 -82949182 - L1Md_F2 LINE L1 0 6582 6503 2 898 908 239 28 9 chr9 41127014 41127225 -82948947 - B3 SINE B2 0 216 2 2 898 432 0 0 0 chr9 41127243 41127291 -82948881 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 898 4954 152 77 62 chr9 41127291 41128377 -82947795 - RLTR25A LTR ERVK 0 1103 1 2 898 489 213 0 0 chr9 41128381 41128550 -82947622 + (CA)n Simple_repeat Simple_repeat 2 170 0 2 898 296 223 10 0 chr9 41128577 41128680 -82947492 + (CA)n Simple_repeat Simple_repeat 2 105 0 2 898 21 0 0 0 chr9 41128692 41128713 -82947459 + AT_rich Low_complexity Low_complexity 1 21 0 2 898 793 339 81 30 chr9 41129554 41130120 -82946052 - HERV16-int LTR ERVL -2379 2617 2023 2 898 3364 38 2 2 chr9 41130141 41130537 -82945635 + MTA_Mm LTR MaLR 1 396 0 2 898 299 401 24 12 chr9 41132630 41132799 -82943373 + Tigger7 DNA MER2_type 51 221 -2270 2 898 256 279 16 0 chr9 41132873 41132934 -82943238 - ID4_ SINE ID -17 66 5 2 898 293 266 7 184 chr9 41132951 41133103 -82943069 - PB1 SINE Alu -2 125 1 2 898 293 309 33 20 chr9 41133107 41133259 -82942913 + Tigger7 DNA MER2_type 2289 2442 -49 2 898 495 0 0 0 chr9 41135277 41135332 -82940840 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 898 516 32 0 0 chr9 41135956 41136018 -82940154 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 898 252 86 0 0 chr9 41136278 41136313 -82939859 + (T)n Simple_repeat Simple_repeat 1 35 0 2 898 495 306 0 37 chr9 41137176 41137363 -82938809 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 898 1727 191 99 36 chr9 41139405 41139797 -82936375 + MTC LTR MaLR 3 419 -2 2 898 342 195 0 0 chr9 41139914 41140001 -82936171 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 898 811 296 89 0 chr9 41140025 41140282 -82935890 - B4A SINE B4 -12 280 1 2 898 1593 279 60 17 chr9 41140301 41140896 -82935276 + L1MB3 LINE L1 5561 6181 -2 2 898 273 227 16 63 chr9 41140928 41141055 -82935117 + Lx9 LINE L1 7524 7644 0 2 898 433 250 73 0 chr9 41141058 41141154 -82935018 + PB1D10 SINE Alu 10 112 -5 2 898 662 258 80 0 chr9 41141244 41141407 -82934765 + B3 SINE B2 9 184 -32 2 898 227 185 0 69 chr9 41141485 41141543 -82934629 + B3 SINE B2 152 205 -11 2 898 304 156 182 0 chr9 41144028 41144105 -82932067 - Lx8 LINE L1 0 7473 7383 2 898 1139 286 27 16 chr9 41144130 41144496 -82931676 - Lx8 LINE L1 -181 7292 6923 2 898 1486 251 28 40 chr9 41145031 41145426 -82930746 + MTD LTR MaLR 18 407 -12 2 898 423 0 0 0 chr9 41146523 41146570 -82929602 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 898 278 210 4 50 chr9 41146570 41146633 -82929539 - B1_Mur2 SINE Alu -5 144 53 2 898 4365 46 21 0 chr9 41146998 41147518 -82928654 - L1_Mus1 LINE L1 0 6567 6037 2 898 819 75 9 0 chr9 41147518 41147624 -82928548 - U6 snRNA snRNA 0 107 1 2 898 3219 34 39 0 chr9 41148541 41148922 -82927250 + MTA_Mm LTR MaLR 1 396 0 2 898 9170 46 1 1 chr9 41148922 41150020 -82926152 + MTA_Mm-int LTR MaLR 1 1098 0 2 898 3428 33 5 0 chr9 41150020 41150414 -82925758 + MTA_Mm LTR MaLR 1 396 0 2 898 22 0 0 0 chr9 41150557 41150579 -82925593 + AT_rich Low_complexity Low_complexity 1 22 0 2 898 672 208 186 10 chr9 41151213 41151412 -82924760 + ORR1B1 LTR MaLR 8 241 -153 2 898 387 120 68 57 chr9 41151392 41151480 -82924692 - RLTR20D LTR ERVK -398 170 82 2 898 729 53 0 0 chr9 41151592 41151686 -82924486 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 898 326 196 152 0 chr9 41151842 41151934 -82924238 - RLTR20D LTR ERVK -445 106 1 2 898 464 275 69 0 chr9 41151986 41152117 -82924055 + B1F1 SINE Alu 1 140 -9 2 898 291 243 52 104 chr9 41154007 41154122 -82922050 - B3A SINE B2 0 216 108 2 898 1193 119 18 91 chr9 41154827 41154977 -82921195 - Lx2 LINE L1 -992 6005 5868 2 898 215 31 31 0 chr9 41154977 41155009 -82921163 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 898 1193 119 18 91 chr9 41155009 41155079 -82921093 - Lx2 LINE L1 -1130 5867 5801 2 898 3257 95 52 0 chr9 41155079 41155540 -82920632 + Lx2 LINE L1 6505 6989 -8 2 898 348 152 0 0 chr9 41155986 41156052 -82920120 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 899 311 320 10 10 chr9 41157705 41157806 -82918366 - Tigger5 DNA MER2_type -3 2403 2303 2 899 439 317 65 26 chr9 41157824 41158054 -82918118 - Tigger5 DNA MER2_type -2167 239 1 2 899 420 225 8 15 chr9 41159481 41159612 -82916560 + CT-rich Low_complexity Low_complexity 1 130 0 2 899 587 231 0 78 chr9 41159627 41159768 -82916404 - ID_B1 SINE B4 -4 220 91 2 899 288 264 0 14 chr9 41159704 41159777 -82916395 - PB1D10 SINE Alu -44 73 2 2 899 225 232 54 0 chr9 41159799 41159855 -82916317 - ID_B1 SINE B4 -7 217 159 2 899 295 265 30 114 chr9 41160418 41160584 -82915588 + L2a LINE L2 3274 3425 -1 2 899 525 226 0 0 chr9 41161218 41161311 -82914861 + PB1D9 SINE Alu 2 94 -26 2 899 462 230 97 19 chr9 41161308 41161463 -82914709 - MTEa LTR MaLR -5 374 208 2 899 500 317 14 7 chr9 41161643 41161789 -82914383 - RSINE1 SINE B4 -17 148 2 2 899 432 0 0 0 chr9 41162138 41162186 -82913986 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 899 955 278 108 9 chr9 41162341 41162682 -82913490 + MTEa LTR MaLR 3 377 -2 2 899 646 261 52 41 chr9 41163099 41163271 -82912901 - B4A SINE B4 -37 255 82 2 899 234 0 0 0 chr9 41163271 41163297 -82912875 + (T)n Simple_repeat Simple_repeat 1 26 0 2 899 251 189 0 36 chr9 41164191 41164246 -82911926 + GA-rich Low_complexity Low_complexity 4 56 0 2 899 504 0 0 0 chr9 41164904 41164960 -82911212 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 899 210 156 0 0 chr9 41165315 41165360 -82910812 + T-rich Low_complexity Low_complexity 1 45 0 2 899 406 308 63 43 chr9 41166626 41166783 -82909389 - MIR SINE MIR -32 230 71 2 899 910 176 36 41 chr9 41166783 41166978 -82909194 + B2_Mm2 SINE B2 1 194 -1 2 899 406 308 63 43 chr9 41166978 41167027 -82909145 - MIR SINE MIR -192 70 20 2 899 1098 116 0 0 chr9 41167040 41167186 -82908986 - B1_Mus1 SINE Alu -1 147 2 2 899 654 295 10 26 chr9 41167378 41167573 -82908599 + ORR1E LTR MaLR 1 192 -167 2 899 873 325 71 8 chr9 41168316 41168770 -82907402 - Lx8 LINE L1 -1559 5914 5437 2 899 396 0 0 0 chr9 41168878 41168922 -82907250 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 899 1246 258 38 87 chr9 41169420 41169926 -82906246 - Lx8 LINE L1 -3 7470 6990 2 899 300 324 0 0 chr9 41170037 41170111 -82906061 - ID4 SINE ID -7 76 3 2 899 413 214 48 19 chr9 41171246 41171351 -82904821 + PB1D10 SINE Alu 10 117 0 2 899 302 294 83 22 chr9 41171474 41171655 -82904517 - L2 LINE L2 -463 2956 2765 2 899 789 90 0 0 chr9 41173958 41174069 -82902103 + (TCCC)n Simple_repeat Simple_repeat 1 111 0 2 899 210 344 71 20 chr9 41174320 41174418 -82901754 - L3b LINE CR1 -11 471 369 2 899 666 0 0 0 chr9 41175707 41175781 -82900391 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 899 947 56 8 0 chr9 41175793 41175919 -82900253 + (GAA)n Simple_repeat Simple_repeat 3 129 0 2 899 845 265 114 55 chr9 41176271 41176543 -82899629 - B4A SINE B4 -4 288 1 2 899 180 194 0 183 chr9 41176864 41176946 -82899226 - MIR SINE MIR -85 177 111 2 899 622 276 116 41 chr9 41177938 41178206 -82897966 + B4A SINE B4 5 292 0 2 899 219 218 0 0 chr9 41178578 41178633 -82897539 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 899 714 175 0 0 chr9 41178644 41178821 -82897351 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 899 257 276 59 6 chr9 41178893 41178996 -82897176 + L1M5 LINE L1 5709 5813 -311 3 899 2055 167 96 8 chr9 41179103 41179490 -82896682 - MTC LTR MaLR 0 421 1 3 899 417 270 64 28 chr9 41179872 41180013 -82896159 - B1F SINE Alu -3 146 1 3 899 301 316 92 75 chr9 41180487 41180732 -82895440 + MIR SINE MIR 20 268 0 3 899 615 242 109 27 chr9 41180866 41181049 -82895123 - B3A SINE B2 0 198 1 3 899 747 296 55 15 chr9 41181189 41181460 -82894712 + B4A SINE B4 1 282 -10 3 899 543 279 97 4 chr9 41182169 41182417 -82893755 - Lx9 LINE L1 -7 7637 7367 3 899 324 0 0 0 chr9 41185423 41185459 -82890713 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 899 216 0 0 0 chr9 41185459 41185482 -82890690 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 899 28 0 0 0 chr9 41185572 41185600 -82890572 + AT_rich Low_complexity Low_complexity 1 28 0 3 899 540 0 0 0 chr9 41185701 41185761 -82890411 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 899 564 15 0 0 chr9 41186441 41186506 -82889666 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 899 180 0 0 0 chr9 41186633 41186653 -82889519 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 899 303 49 0 0 chr9 41187358 41187399 -82888773 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 3 899 272 200 14 0 chr9 41187858 41187928 -82888244 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 899 333 0 0 0 chr9 41188390 41188427 -82887745 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 899 441 0 0 0 chr9 41188431 41188480 -82887692 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 899 229 214 105 18 chr9 41188726 41188783 -82887389 - ID4 SINE ID -11 72 11 3 899 321 26 0 0 chr9 41188795 41188833 -82887339 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 899 400 302 8 8 chr9 41189371 41189488 -82886684 - PB1D10 SINE Alu 0 117 1 3 899 330 331 118 30 chr9 41189602 41189864 -82886308 - B4A SINE B4 -6 286 2 3 899 754 220 40 23 chr9 41190018 41190195 -82885977 - B3A SINE B2 -17 181 2 3 899 402 305 109 0 chr9 41191147 41191275 -82884897 - RSINE1 SINE B4 -19 146 5 3 899 445 280 57 51 chr9 41191840 41191998 -82884174 + B4A SINE B4 75 233 -59 3 899 226 246 0 90 chr9 41192683 41192750 -82883422 + B4A SINE B4 232 292 0 3 899 433 312 57 28 chr9 41192961 41193208 -82882964 + L1MA6 LINE L1 6047 6300 0 3 899 490 226 8 50 chr9 41193574 41193695 -82882477 + PB1D7 SINE Alu 5 120 0 3 899 1065 149 5 5 chr9 41194678 41194880 -82881292 - Lx2B LINE L1 0 7000 6799 3 899 213 188 50 30 chr9 41195422 41195521 -82880651 + (TATAA)n Simple_repeat Simple_repeat 5 105 0 3 899 21 36 0 0 chr9 41197112 41197140 -82879032 + AT_rich Low_complexity Low_complexity 1 28 0 3 899 1263 129 114 0 chr9 41197966 41198167 -82878005 - URR1A DNA MER1_type 0 226 3 3 899 555 90 0 0 chr9 41198819 41198897 -82877275 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 899 237 234 0 0 chr9 41199200 41199247 -82876925 - L1M2 LINE L1 -412 5888 5842 3 899 361 312 11 0 chr9 41199285 41199378 -82876794 - B1F SINE Alu -51 98 5 3 899 225 0 0 0 chr9 41200460 41200485 -82875687 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 899 188 233 48 48 chr9 41201850 41201913 -82874259 + MIR SINE MIR 87 149 -59 3 899 256 333 29 43 chr9 41202295 41202433 -82873739 + ORR1E LTR MaLR 1 136 -223 3 899 268 282 132 2 chr9 41203003 41203186 -82872986 - MIRb SINE MIR -27 241 26 3 899 348 64 0 0 chr9 41204314 41204361 -82871811 + (T)n Simple_repeat Simple_repeat 1 47 0 3 899 635 211 0 6 chr9 41205116 41205283 -82870889 + (TG)n Simple_repeat Simple_repeat 1 166 0 3 899 766 339 10 60 chr9 41205329 41205557 -82870615 - B4A SINE B4 0 292 77 3 899 522 0 0 0 chr9 41205557 41205615 -82870557 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 899 294 29 0 0 chr9 41205615 41205649 -82870523 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 899 766 339 10 60 chr9 41205649 41205720 -82870452 - B4A SINE B4 -216 76 8 3 899 434 244 0 0 chr9 41206654 41206732 -82869440 + ID4 SINE ID 3 80 -3 3 899 335 182 13 0 chr9 41206767 41206844 -82869328 + GA-rich Low_complexity Low_complexity 4 81 0 3 899 1381 30 7 15 chr9 41206853 41207126 -82869046 + (GGGAA)n Simple_repeat Simple_repeat 1 271 0 3 899 207 314 75 9 chr9 41208245 41208351 -82867821 + MIRb SINE MIR 36 148 -120 3 899 645 14 0 0 chr9 41208584 41208658 -82867514 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 899 404 243 37 18 chr9 41208826 41208935 -82867237 - B4 SINE B4 -173 119 9 3 899 1284 89 0 0 chr9 41209709 41209889 -82866283 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 899 429 106 0 0 chr9 41209889 41209950 -82866222 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 3 899 905 133 13 40 chr9 41209957 41210106 -82866066 - B1_Mur4 SINE Alu -5 145 1 3 899 1029 280 7 52 chr9 41210585 41210890 -82865282 - B4A SINE B4 -1 291 1 3 899 360 64 0 0 chr9 41213498 41213545 -82862627 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 3 899 1161 63 0 0 chr9 41213549 41213691 -82862481 - B1_Mus1 SINE Alu -6 142 1 3 899 1203 51 19 0 chr9 41213799 41213956 -82862216 + L1Md_A LINE L1 6422 6581 -1 3 899 1734 62 0 13 chr9 41214098 41214328 -82861844 - L1Md_F2 LINE L1 -2 6580 6354 3 899 272 70 23 0 chr9 41214616 41214659 -82861513 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 3 899 299 278 20 49 chr9 41214671 41214773 -82861399 - PB1D7 SINE Alu -1 119 21 3 899 204 269 24 71 chr9 41215044 41215128 -82861044 - L3 LINE CR1 -3 4486 4407 3 899 261 0 0 0 chr9 41215754 41215783 -82860389 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 899 522 0 0 0 chr9 41215783 41215840 -82860332 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 899 1050 45 0 0 chr9 41216908 41217040 -82859132 + (GA)n Simple_repeat Simple_repeat 1 132 0 3 899 708 289 51 8 chr9 41217464 41217698 -82858474 - MTD LTR MaLR -2 417 174 3 899 1579 144 137 48 chr9 41217839 41218014 -82858158 - RMER17C LTR ERVK -4 406 214 3 899 320 83 33 0 chr9 41218014 41218074 -82858098 + (CAGA)n Simple_repeat Simple_repeat 1 62 0 3 899 1579 144 137 48 chr9 41218074 41218271 -82857901 - RMER17C LTR ERVK -197 213 1 3 899 397 312 54 0 chr9 41218271 41218383 -82857789 - MTD LTR MaLR -257 162 45 3 899 219 290 0 16 chr9 41218694 41218757 -82857415 + L2c LINE L2 3324 3385 -2 3 899 476 259 25 17 chr9 41218951 41219069 -82857103 + B3 SINE B2 1 119 -97 3 899 210 91 0 0 chr9 41219108 41219141 -82857031 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 3 899 478 356 6 6 chr9 41219219 41219400 -82856772 - B3A SINE B2 -16 182 2 3 899 1485 34 0 0 chr9 41221134 41221313 -82854859 + (TCTCCC)n Simple_repeat Simple_repeat 2 180 0 3 899 191 183 28 0 chr9 41223600 41223671 -82852501 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 3 899 846 56 0 0 chr9 41223694 41223802 -82852370 + (GA)n Simple_repeat Simple_repeat 2 109 0 3 899 643 279 96 19 chr9 41224418 41224688 -82851484 - B4A SINE B4 0 292 2 3 899 518 294 144 0 chr9 41226673 41226819 -82849353 + B4 SINE B4 122 288 -4 3 899 361 197 0 0 chr9 41230786 41230852 -82845320 - B1_Mur4 SINE Alu -83 67 2 3 899 294 234 51 13 chr9 41230787 41230865 -82845307 - B4 SINE B4 -142 150 70 3 899 4602 228 80 30 chr9 41230878 41231066 -82845106 - Lx9 LINE L1 0 7644 7417 3 899 230 0 0 32 chr9 41231066 41231097 -82845075 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 899 312 27 0 0 chr9 41231097 41231133 -82845039 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 899 4602 241 79 31 chr9 41231133 41232314 -82843858 - Lx9 LINE L1 -228 7416 6069 3 899 1949 201 66 43 chr9 41232378 41232978 -82843194 - Lx9 LINE L1 -1699 5945 5292 3 899 186 241 17 0 chr9 41233258 41233316 -82842856 + MIRm SINE MIR 213 271 -5 3 899 985 273 32 98 chr9 41235550 41235956 -82840216 - MTE2a LTR MaLR 0 379 1 3 899 561 319 145 35 chr9 41236328 41236783 -82839389 - MER74B LTR ERVL -115 507 3 3 899 21 0 0 0 chr9 41236952 41236973 -82839199 + AT_rich Low_complexity Low_complexity 1 21 0 3 899 405 0 0 0 chr9 41237548 41237593 -82838579 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 899 3401 28 5 5 chr9 41240222 41240618 -82835554 - MTA_Mm LTR MaLR 0 396 1 3 899 21 0 0 0 chr9 41240676 41240697 -82835475 + AT_rich Low_complexity Low_complexity 1 21 0 3 899 206 163 0 20 chr9 41240860 41240910 -82835262 + A-rich Low_complexity Low_complexity 3 51 0 3 899 24 0 0 0 chr9 41241153 41241177 -82834995 + AT_rich Low_complexity Low_complexity 1 24 0 3 899 513 264 42 66 chr9 41241234 41241400 -82834772 - RSINE1 SINE B4 0 165 4 3 899 189 0 0 0 chr9 41241897 41241918 -82834254 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 3 899 534 262 75 75 chr9 41242067 41242240 -82833932 + B4A SINE B4 3 175 -117 3 899 209 77 51 0 chr9 41242244 41242283 -82833889 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 3 899 626 224 0 12 chr9 41242964 41243127 -82833045 + C-rich Low_complexity Low_complexity 5 165 0 3 899 435 269 0 60 chr9 41243286 41243436 -82832736 - ID_B1 SINE B4 0 224 84 3 899 990 213 138 20 chr9 41243502 41243799 -82832373 - Lx9 LINE L1 -1122 6522 6191 3 899 657 242 0 81 chr9 41244171 41244369 -82831803 - B3A SINE B2 -16 182 1 3 899 1231 222 201 7 chr9 41245283 41245700 -82830472 - RMER15 LTR ERVL -50 525 28 3 899 895 292 39 39 chr9 41245746 41246006 -82830166 + B4A SINE B4 29 288 -4 3 899 198 0 0 0 chr9 41246028 41246050 -82830122 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 899 418 277 63 25 chr9 41246897 41247056 -82829116 - MER5A1 DNA MER1_type 0 166 2 4 899 1561 146 102 31 chr9 41247120 41247307 -82828865 - RMER17C LTR ERVK 0 410 213 4 899 899 57 8 0 chr9 41247307 41247429 -82828743 + (GA)n Simple_repeat Simple_repeat 1 123 0 4 899 1561 146 102 31 chr9 41247429 41247622 -82828550 - RMER17C LTR ERVK -198 212 3 4 899 198 0 0 0 chr9 41247625 41247647 -82828525 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 899 251 0 59 0 chr9 41248423 41248457 -82827715 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 899 243 61 0 0 chr9 41248506 41248539 -82827633 + (T)n Simple_repeat Simple_repeat 1 33 0 4 899 427 267 117 27 chr9 41248887 41249068 -82827104 + B3 SINE B2 9 191 -7 4 899 24 0 0 0 chr9 41249073 41249097 -82827075 + AT_rich Low_complexity Low_complexity 1 24 0 4 899 418 317 28 77 chr9 41249872 41250053 -82826119 + B4A SINE B4 4 175 -117 4 899 258 32 0 0 chr9 41250206 41250237 -82825935 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 899 392 186 54 124 chr9 41250706 41250797 -82825375 + B3 SINE B2 4 93 -123 4 899 2115 113 6 68 chr9 41250797 41251148 -82825024 + ORR1A4 LTR MaLR 1 329 0 4 899 392 186 54 124 chr9 41251148 41251185 -82824987 + B3 SINE B2 94 123 -93 4 899 270 344 185 25 chr9 41251730 41252488 -82823684 - L2 LINE L2 -649 2770 1892 4 899 751 288 73 51 chr9 41252491 41252894 -82823278 + MTE2a LTR MaLR 1 395 -24 4 899 1585 106 0 13 chr9 41253618 41253856 -82822316 - L1Md_F2 LINE L1 0 6582 6348 4 899 211 224 0 20 chr9 41254240 41254290 -82821882 + GA-rich Low_complexity Low_complexity 1 49 0 4 899 207 0 0 0 chr9 41255166 41255189 -82820983 + (T)n Simple_repeat Simple_repeat 1 23 0 4 899 199 336 27 9 chr9 41255884 41255995 -82820177 + L3b LINE CR1 161 273 -209 4 899 370 228 25 0 chr9 41256143 41256222 -82819950 + ID4_ SINE ID 2 82 -1 4 899 400 275 9 18 chr9 41256462 41256573 -82819599 + PB1D10 SINE Alu 2 111 -6 4 899 312 172 0 0 chr9 41256573 41256631 -82819541 + GA-rich Low_complexity Low_complexity 1 58 0 4 899 476 278 170 11 chr9 41256884 41257066 -82819106 + ID_B1 SINE B4 1 211 -13 4 899 374 168 0 45 chr9 41257066 41257178 -82818994 + GA-rich Low_complexity Low_complexity 3 109 0 4 899 282 56 0 0 chr9 41257613 41257649 -82818523 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 899 257 317 82 27 chr9 41258202 41258348 -82817824 + MIRc SINE MIR 93 246 -22 4 899 1543 203 158 79 chr9 41258402 41258894 -82817278 + MT2A LTR ERVL 3 533 0 4 899 297 0 0 0 chr9 41259383 41259416 -82816756 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 899 261 0 0 0 chr9 41259416 41259444 -82816728 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 899 781 227 0 7 chr9 41259446 41259588 -82816584 - RSINE1 SINE B4 -24 141 1 4 899 561 309 75 0 chr9 41260387 41260588 -82815584 - B3 SINE B2 0 216 1 4 899 749 273 0 21 chr9 41260838 41261025 -82815147 + B3A SINE B2 1 183 -15 4 899 195 153 39 48 chr9 41261027 41261130 -82815042 + (CA)n Simple_repeat Simple_repeat 1 102 0 4 899 188 163 45 34 chr9 41261172 41261261 -82814911 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 899 405 141 0 0 chr9 41261263 41261348 -82814824 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 899 264 59 0 0 chr9 41261348 41261382 -82814790 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 899 636 311 70 61 chr9 41261872 41262418 -82813754 + L1MB7 LINE L1 5524 6062 -116 4 899 524 117 10 41 chr9 41262999 41263097 -82813075 + ORR1A4 LTR MaLR 194 288 -41 4 899 1172 88 0 0 chr9 41263116 41263263 -82812909 + B1_Mus1 SINE Alu 2 148 0 4 899 189 0 0 0 chr9 41263336 41263357 -82812815 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 4 899 2429 89 6 0 chr9 41264086 41264413 -82811759 + ORR1A4 LTR MaLR 1 329 0 4 899 560 250 22 0 chr9 41265868 41266004 -82810168 + B1F SINE Alu 5 143 -6 4 899 724 259 50 30 chr9 41266879 41267078 -82809094 + B3 SINE B2 1 203 -13 4 899 495 0 0 0 chr9 41267079 41267134 -82809038 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 4 899 271 245 20 113 chr9 41267340 41267513 -82808659 - MTE2a LTR MaLR -52 327 186 4 899 347 291 11 92 chr9 41267513 41267687 -82808485 - Lx9 LINE L1 -494 7150 6991 4 899 21 0 0 0 chr9 41267948 41267969 -82808203 + AT_rich Low_complexity Low_complexity 1 21 0 4 899 220 49 0 68 chr9 41268650 41268694 -82807478 + (CCCCCT)n Simple_repeat Simple_repeat 2 42 0 4 899 292 91 55 0 chr9 41269268 41269323 -82806849 + B1_Mm SINE Alu 89 146 -1 4 899 435 243 56 0 chr9 41270733 41270840 -82805332 - PB1D7 SINE Alu -7 113 1 4 899 742 261 0 6 chr9 41271889 41271967 -82804205 + B4 SINE B4 9 85 -207 4 899 271 327 28 9 chr9 41271967 41272075 -82804097 + PB1D9 SINE Alu 2 111 -9 4 899 621 0 0 0 chr9 41272170 41272239 -82803933 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 899 791 188 6 0 chr9 41272811 41272987 -82803185 + CT-rich Low_complexity Low_complexity 2 178 0 4 899 208 173 26 26 chr9 41272999 41273076 -82803096 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 4 899 908 0 19 0 chr9 41273076 41273183 -82802989 + (TCTCC)n Simple_repeat Simple_repeat 2 110 0 4 899 2743 43 0 0 chr9 41274040 41274369 -82801803 - L1Md_T LINE L1 0 6582 6254 4 899 229 276 0 38 chr9 41274535 41274599 -82801573 + T-rich Low_complexity Low_complexity 17 78 0 4 899 309 306 102 0 chr9 41274599 41274707 -82801465 - PB1 SINE Alu -8 119 1 4 899 229 276 0 38 chr9 41274707 41274721 -82801451 + T-rich Low_complexity Low_complexity 3 16 0 4 899 405 0 0 0 chr9 41275447 41275492 -82800680 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 899 198 103 0 0 chr9 41275876 41275905 -82800267 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 4 899 1175 0 7 0 chr9 41276718 41276853 -82799319 + (GA)n Simple_repeat Simple_repeat 1 136 0 4 899 180 0 0 0 chr9 41280073 41280093 -82796079 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 899 221 365 100 15 chr9 41280405 41280605 -82795567 - L3 LINE CR1 -248 4241 4025 4 899 441 0 0 0 chr9 41280832 41280881 -82795291 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 899 454 291 0 0 chr9 41280898 41281008 -82795164 - ID_B1 SINE B4 -35 189 80 4 899 552 308 0 0 chr9 41281355 41281501 -82794671 - ID_B1 SINE B4 0 224 79 4 899 189 288 17 0 chr9 41281759 41281818 -82794354 + MIRc SINE MIR 90 149 -119 4 899 288 343 50 32 chr9 41283770 41283990 -82792182 + MIRc SINE MIR 31 254 -14 4 899 552 100 0 0 chr9 41284988 41285068 -82791104 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 899 21 36 0 0 chr9 41285487 41285515 -82790657 + AT_rich Low_complexity Low_complexity 1 28 0 4 899 1024 231 10 0 chr9 41287367 41287570 -82788602 + B3 SINE B2 1 205 -11 4 112 960 300 25 11 chr9 41287605 41287815 -82788357 + B4A SINE B4 5 212 -80 4 900 446 0 19 0 chr9 41287815 41287869 -82788303 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 4 900 960 300 25 11 chr9 41287869 41287938 -82788234 + B4A SINE B4 213 287 -5 4 900 1926 161 50 3 chr9 41288870 41289213 -82786959 - RLTR15 LTR ERVK 0 359 1 4 900 633 274 25 19 chr9 41289348 41289508 -82786664 - RSINE1 SINE B4 -1 164 4 4 900 275 314 35 0 chr9 41289760 41289846 -82786326 - PB1D10 SINE Alu -28 89 1 4 900 23 0 0 0 chr9 41290584 41290607 -82785565 + AT_rich Low_complexity Low_complexity 1 23 0 4 900 1675 208 68 16 chr9 41291151 41291533 -82784639 - MTD LTR MaLR -17 402 1 4 900 1120 329 22 5 chr9 41294219 41294622 -82781550 - Lx8 LINE L1 -181 7292 6883 4 900 426 223 86 35 chr9 41294702 41294818 -82781354 + Lx8 LINE L1 6241 6362 -1111 4 900 201 355 45 61 chr9 41295722 41295968 -82780204 + MIR SINE MIR 21 262 0 4 900 180 211 32 81 chr9 41296933 41296995 -82779177 + L2c LINE L2 3329 3387 0 4 900 22 0 0 0 chr9 41297107 41297129 -82779043 + AT_rich Low_complexity Low_complexity 1 22 0 4 900 282 29 0 0 chr9 41297326 41297361 -82778811 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 900 372 94 0 0 chr9 41297500 41297553 -82778619 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 4 900 257 276 25 62 chr9 41297555 41297636 -82778536 - ID4_ SINE ID 0 83 6 4 900 28 0 0 0 chr9 41298224 41298252 -82777920 + AT_rich Low_complexity Low_complexity 1 28 0 4 900 193 357 81 23 chr9 41298662 41298748 -82777424 - MER5A DNA MER1_type 0 189 99 4 900 501 294 27 34 chr9 41298799 41298947 -82777225 + RSINE1 SINE B4 2 148 -17 4 900 288 0 0 0 chr9 41298972 41299004 -82777168 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 900 554 294 0 7 chr9 41299258 41299402 -82776770 - B1F SINE Alu -6 143 1 4 900 225 274 97 0 chr9 41299772 41299834 -82776338 - L2a LINE L2 -100 3326 3259 4 900 1130 314 63 10 chr9 41299868 41300264 -82775908 - MTD LTR MaLR 0 419 3 4 900 339 353 149 29 chr9 41300356 41300943 -82775229 - L2a LINE L2 -230 3145 2477 4 900 398 335 6 94 chr9 41301060 41301241 -82774931 + RSINE1 SINE B4 1 165 0 4 900 198 241 17 0 chr9 41301311 41301369 -82774803 - L2a LINE L2 -1106 2313 2255 4 900 1099 102 0 0 chr9 41301386 41301533 -82774639 + B1_Mus1 SINE Alu 2 148 0 4 900 234 0 0 0 chr9 41301533 41301559 -82774613 + (CAAAC)n Simple_repeat Simple_repeat 4 29 0 4 900 351 98 0 0 chr9 41301556 41301617 -82774555 + (A)n Simple_repeat Simple_repeat 1 61 0 4 900 213 159 0 0 chr9 41301637 41301681 -82774491 + GA-rich Low_complexity Low_complexity 1 44 0 4 900 654 298 10 72 chr9 41301781 41302088 -82774084 + B4A SINE B4 3 290 -2 4 900 374 400 37 35 chr9 41302189 41302697 -82773475 - L2a LINE L2 -1305 2114 1606 4 900 504 0 0 0 chr9 41304365 41304421 -82771751 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 900 189 94 0 0 chr9 41305191 41305223 -82770949 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 5 900 1798 171 20 14 chr9 41305333 41305684 -82770488 - ORR1B1 LTR MaLR 0 394 42 5 900 601 326 71 11 chr9 41305946 41306213 -82769959 + B4 SINE B4 10 292 0 5 900 288 130 0 0 chr9 41306213 41306259 -82769913 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 900 220 338 71 45 chr9 41307123 41307278 -82768894 + MIRb SINE MIR 102 260 -8 5 900 1118 266 112 26 chr9 41307714 41308061 -82768111 - MTE2a LTR MaLR 0 379 3 5 900 916 178 178 0 chr9 41308174 41308365 -82767807 + URR1B DNA MER1_type 1 225 0 5 900 434 171 12 12 chr9 41308911 41308994 -82767178 + B4 SINE B4 3 85 -207 5 900 243 0 0 0 chr9 41309076 41309103 -82767069 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 900 1049 142 42 10 chr9 41309344 41309536 -82766636 + URR1B DNA MER1_type 28 225 0 5 900 186 43 0 0 chr9 41309668 41309691 -82766481 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 900 233 196 71 0 chr9 41311513 41311569 -82764603 - L1_Mur2 LINE L1 -1689 4188 4129 5 900 2884 312 75 33 chr9 41311557 41313434 -82762738 - L1M2 LINE L1 -2051 4092 2138 5 900 414 246 39 72 chr9 41314759 41314874 -82761298 - ID_B1 SINE B4 -63 161 53 5 900 7376 53 0 8 chr9 41314874 41315784 -82760388 + L1Md_F2 LINE L1 5671 6573 -9 5 900 414 246 39 72 chr9 41315784 41315821 -82760351 - ID SINE ID -172 52 14 5 900 608 246 42 46 chr9 41316489 41316706 -82759466 + B3 SINE B2 1 216 0 5 900 189 0 0 0 chr9 41318345 41318366 -82757806 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 5 900 26 0 0 0 chr9 41318789 41318815 -82757357 + AT_rich Low_complexity Low_complexity 1 26 0 5 900 984 201 10 35 chr9 41319197 41319398 -82756774 - B3A SINE B2 -2 196 1 5 900 259 232 157 83 chr9 41319557 41319665 -82756507 - MLT1A1 LTR MaLR -292 116 1 5 900 185 290 0 16 chr9 41320333 41320396 -82755776 - MIRc SINE MIR -111 157 96 5 900 366 80 0 0 chr9 41321289 41321339 -82754833 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 5 900 1348 239 73 37 chr9 41322198 41322327 -82753845 - L1M3 LINE L1 -1100 5040 4885 5 900 402 101 0 0 chr9 41322327 41322396 -82753776 + (CAGT)n Simple_repeat Simple_repeat 1 69 0 5 900 1348 239 73 37 chr9 41322396 41322756 -82753416 - L1M3 LINE L1 -1256 4884 4533 5 900 435 342 13 0 chr9 41322797 41322946 -82753226 + GA-rich Low_complexity Low_complexity 1 151 0 5 900 285 29 0 0 chr9 41322997 41323031 -82753141 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 900 899 119 6 0 chr9 41323093 41323269 -82752903 + (GA)n Simple_repeat Simple_repeat 2 178 0 5 900 239 273 65 24 chr9 41323291 41323415 -82752757 - MER5A DNA MER1_type -59 130 2 5 900 544 116 21 0 chr9 41323911 41324006 -82752166 + (TCCCC)n Simple_repeat Simple_repeat 2 98 0 5 900 1409 34 6 0 chr9 41324006 41324181 -82751991 + (TCTCC)n Simple_repeat Simple_repeat 2 177 0 5 900 392 273 29 79 chr9 41324183 41324204 -82751968 - ID_B1 SINE B4 -13 211 138 5 900 462 252 10 10 chr9 41324204 41324308 -82751864 - B1F1 SINE Alu -38 111 8 5 900 229 295 16 111 chr9 41324211 41324337 -82751835 - MT2B LTR ERVL -344 257 144 5 900 392 273 29 79 chr9 41324308 41324322 -82751850 - ID_B1 SINE B4 -13 137 80 5 900 216 163 0 0 chr9 41324814 41324857 -82751315 + GA-rich Low_complexity Low_complexity 1 43 0 5 900 468 0 0 0 chr9 41325466 41325518 -82750654 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 900 333 0 0 0 chr9 41325694 41325731 -82750441 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 900 201 74 0 0 chr9 41327273 41327300 -82748872 + (TATG)n Simple_repeat Simple_repeat 4 30 0 5 900 1138 272 37 42 chr9 41328894 41329193 -82746979 - MTE2a LTR MaLR -1 378 80 5 900 531 298 46 41 chr9 41329193 41329389 -82746783 + B3A SINE B2 1 197 -1 5 900 1138 272 37 42 chr9 41329389 41329469 -82746703 - MTE2a LTR MaLR -300 79 1 5 900 1587 164 156 14 chr9 41330111 41330476 -82745696 + Lx9 LINE L1 7224 7640 -4 5 900 266 317 36 6 chr9 41331209 41331305 -82744867 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 5 900 189 74 0 0 chr9 41331305 41331332 -82744840 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 900 266 317 36 6 chr9 41331332 41331403 -82744769 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 5 900 621 92 33 50 chr9 41332077 41332259 -82743913 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 900 707 77 52 23 chr9 41332301 41332473 -82743699 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 900 862 50 5 68 chr9 41332490 41332682 -82743490 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 900 333 0 0 0 chr9 41332682 41332719 -82743453 + (CCA)n Simple_repeat Simple_repeat 3 39 0 5 900 459 52 0 0 chr9 41333729 41333787 -82742385 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 900 23 0 0 0 chr9 41334729 41334752 -82741420 + AT_rich Low_complexity Low_complexity 1 23 0 5 900 303 340 19 13 chr9 41335240 41335398 -82740774 + CT-rich Low_complexity Low_complexity 5 163 0 5 900 24 0 0 0 chr9 41336172 41336196 -82739976 + AT_rich Low_complexity Low_complexity 1 24 0 5 900 226 118 59 0 chr9 41336537 41336588 -82739584 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 5 900 244 0 27 27 chr9 41337078 41337115 -82739057 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 900 409 204 33 107 chr9 41337628 41337749 -82738423 + B1_Mus2 SINE Alu 1 112 -8 5 900 1196 48 0 39 chr9 41338039 41338176 -82737996 + B1_Mus1 SINE Alu 2 138 -10 5 900 360 0 0 0 chr9 41338176 41338216 -82737956 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5 900 1196 48 0 39 chr9 41338216 41338231 -82737941 + B1_Mus1 SINE Alu 139 148 0 5 900 261 57 0 0 chr9 41340229 41340264 -82735908 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 900 22 35 0 0 chr9 41341724 41341753 -82734419 + AT_rich Low_complexity Low_complexity 1 29 0 5 900 312 27 0 0 chr9 41342248 41342285 -82733887 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 5 900 232 260 116 51 chr9 41345376 41345514 -82730658 - MLT1H LTR MaLR -387 162 16 5 900 451 266 8 8 chr9 41346985 41347134 -82729038 + B1F SINE Alu 1 149 0 5 900 608 307 35 74 chr9 41347726 41347930 -82728242 - L1MA7 LINE L1 -287 6010 5814 5 900 760 239 81 19 chr9 41347930 41348139 -82728033 - ID_B1 SINE B4 0 224 3 5 900 608 301 26 101 chr9 41348139 41348377 -82727795 - L1MA7 LINE L1 -476 5815 5591 5 900 390 269 56 56 chr9 41348498 41348640 -82727532 + B3A SINE B2 6 147 -51 5 900 236 222 0 58 chr9 41351265 41351351 -82724821 + (TCTCTG)n Simple_repeat Simple_repeat 3 83 0 5 900 2362 179 34 5 chr9 41351547 41351956 -82724216 + MTC LTR MaLR 1 421 0 5 900 244 305 37 49 chr9 41351962 41352124 -82724048 - Tigger14a DNA MER2_type -116 208 49 5 900 300 400 36 0 chr9 41352371 41352511 -82723661 + LTR33 LTR ERVL 46 190 -325 5 900 42 65 0 0 chr9 41355055 41355132 -82721040 + AT_rich Low_complexity Low_complexity 1 77 0 5 900 267 31 0 0 chr9 41355162 41355194 -82720978 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 900 629 244 118 11 chr9 41355655 41355833 -82720339 + B3A SINE B2 1 197 -1 5 900 859 63 0 0 chr9 41356720 41356847 -82719325 - L1Md_A LINE L1 -2 6580 6454 5 900 931 298 123 39 chr9 41356887 41357352 -82718820 - Lx9 LINE L1 -7 7637 7134 5 900 210 118 0 0 chr9 41357589 41357623 -82718549 + (GGA)n Simple_repeat Simple_repeat 1 34 0 5 900 478 305 6 19 chr9 41358586 41358743 -82717429 - Lx9 LINE L1 -317 7327 7173 5 900 2003 116 3 59 chr9 41359707 41360045 -82716127 - ORR1A2 LTR MaLR -8 319 1 5 900 1194 90 0 0 chr9 41360184 41360546 -82715626 + (TG)n Simple_repeat Simple_repeat 1 362 0 5 900 226 266 15 30 chr9 41360554 41360620 -82715552 - ID4_ SINE ID -17 66 2 5 900 800 321 45 45 chr9 41360996 41361414 -82714758 - MER82 DNA MER2_type -235 418 1 5 900 376 310 92 4 chr9 41361479 41361864 -82714308 - L1MC4a LINE L1 -14 7981 7420 5 900 577 252 84 96 chr9 41361926 41362259 -82713913 + RLTR15 LTR ERVK 1 329 -30 5 900 279 133 0 0 chr9 41362370 41362415 -82713757 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 900 926 305 17 21 chr9 41362437 41362725 -82713447 - B4A SINE B4 -2 290 4 5 900 185 317 103 25 chr9 41363244 41363448 -82712724 - L3 LINE CR1 -102 4387 4168 5 900 469 282 35 14 chr9 41363457 41363601 -82712571 + B1F1 SINE Alu 3 149 0 5 900 224 276 161 23 chr9 41364081 41364211 -82711961 - L3 LINE CR1 -823 3666 3519 5 900 234 0 0 0 chr9 41365722 41365748 -82710424 + (CAA)n Simple_repeat Simple_repeat 3 28 0 5 900 326 325 0 106 chr9 41365856 41366045 -82710127 - B4 SINE B4 -113 179 11 5 900 846 214 0 0 chr9 41366074 41366219 -82709953 - B1_Mur1 SINE Alu -2 147 3 5 900 3017 26 3 3 chr9 41366896 41367242 -82708930 + ORR1A0 LTR MaLR 1 346 0 5 900 1918 48 0 0 chr9 41367242 41367493 -82708679 - ORR1A0 LTR MaLR -95 251 1 5 900 229 299 15 15 chr9 41367511 41367579 -82708593 + ORR1E LTR MaLR 1 68 -291 5 900 279 300 82 98 chr9 41367662 41367906 -82708266 + ORR1E LTR MaLR 98 337 -22 5 900 242 314 29 0 chr9 41367991 41368061 -82708111 + C-rich Low_complexity Low_complexity 1 72 0 5 900 759 103 0 0 chr9 41368071 41368187 -82707985 - B1_Mur3 SINE Alu 0 149 34 5 900 715 223 36 0 chr9 41368678 41368844 -82707328 + U2 snRNA snRNA 15 186 -2 5 900 366 278 218 0 chr9 41370350 41370483 -82705689 + RSINE1 SINE B4 4 165 0 5 900 225 330 48 19 chr9 41370523 41370628 -82705544 - MIRb SINE MIR -105 163 56 5 900 682 264 6 12 chr9 41370698 41370859 -82705313 - RSINE1 SINE B4 -2 163 4 5 900 2626 161 26 22 chr9 41371164 41371667 -82704505 - RLTR16 LTR ERVK 0 505 1 5 900 196 73 98 0 chr9 41372309 41372350 -82703822 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 5 900 280 282 118 0 chr9 41372808 41372893 -82703279 - PB1 SINE Alu -2 125 31 5 900 204 294 0 0 chr9 41374187 41374255 -82701917 + (CATA)n Simple_repeat Simple_repeat 3 70 0 5 900 507 144 0 0 chr9 41375058 41375169 -82701003 + (TATG)n Simple_repeat Simple_repeat 2 112 0 5 900 874 287 28 52 chr9 41375414 41375704 -82700468 - B4A SINE B4 -8 284 2 6 900 212 308 98 41 chr9 41375798 41375920 -82700252 - MIR3 SINE MIR -50 158 30 6 900 329 222 11 107 chr9 41377294 41377420 -82698752 + PB1D10 SINE Alu 11 127 -21 6 900 230 147 28 42 chr9 41377432 41377503 -82698669 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 6 900 588 337 14 45 chr9 41377746 41378038 -82698134 + B4A SINE B4 1 283 -9 6 900 21 0 0 0 chr9 41378529 41378550 -82697622 + AT_rich Low_complexity Low_complexity 1 21 0 6 900 217 208 28 0 chr9 41378977 41379049 -82697123 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 900 323 299 24 57 chr9 41379098 41379222 -82696950 - B4A SINE B4 -172 120 1 6 900 455 336 8 0 chr9 41381969 41382103 -82694069 + RSINE1 SINE B4 8 142 -23 6 900 210 266 145 53 chr9 41382504 41382635 -82693537 + MIRb SINE MIR 5 147 -121 6 900 232 143 18 18 chr9 41383086 41383143 -82693029 + CT-rich Low_complexity Low_complexity 1 57 0 6 900 285 75 0 0 chr9 41383143 41383183 -82692989 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 900 391 176 16 0 chr9 41383273 41383398 -82692774 + CT-rich Low_complexity Low_complexity 2 128 0 6 900 223 93 23 23 chr9 41383590 41383610 -82692562 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 6 900 1284 89 0 0 chr9 41383610 41383790 -82692382 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 6 900 223 93 23 23 chr9 41383790 41383813 -82692359 + (GAAAA)n Simple_repeat Simple_repeat 1 24 0 6 900 312 84 27 53 chr9 41384706 41384781 -82691391 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 6 900 263 185 0 44 chr9 41386331 41386399 -82689773 + C-rich Low_complexity Low_complexity 5 69 0 6 900 201 125 50 0 chr9 41387428 41387468 -82688704 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 900 300 53 0 0 chr9 41388138 41388176 -82687996 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 900 524 53 13 0 chr9 41388303 41388379 -82687793 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 900 32 0 0 0 chr9 41388550 41388582 -82687590 + AT_rich Low_complexity Low_complexity 1 32 0 6 900 306 0 0 0 chr9 41388758 41388792 -82687380 + (T)n Simple_repeat Simple_repeat 1 34 0 6 900 22 35 0 0 chr9 41389190 41389219 -82686953 + AT_rich Low_complexity Low_complexity 1 29 0 6 900 777 40 0 0 chr9 41390132 41390233 -82685939 + (GA)n Simple_repeat Simple_repeat 2 102 0 6 900 180 0 0 0 chr9 41392475 41392495 -82683677 + (T)n Simple_repeat Simple_repeat 1 20 0 6 900 1091 81 23 0 chr9 41392644 41392817 -82683355 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 6 900 213 94 0 0 chr9 41392986 41393018 -82683154 + (T)n Simple_repeat Simple_repeat 1 32 0 6 900 195 129 0 0 chr9 41393638 41393669 -82682503 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 900 236 237 8 39 chr9 41397688 41397823 -82678349 + CT-rich Low_complexity Low_complexity 1 130 0 6 900 230 277 26 64 chr9 41399436 41399557 -82676615 - MIRc SINE MIR -114 154 37 6 900 396 275 114 8 chr9 41401635 41401767 -82674405 - MER3 DNA MER1_type 0 209 64 6 900 406 269 44 22 chr9 41402177 41402314 -82673858 + B1F1 SINE Alu 1 140 -9 6 900 347 60 20 0 chr9 41402770 41402820 -82673352 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 900 966 146 50 11 chr9 41403247 41403427 -82672745 - URR1B DNA MER1_type -2 223 37 6 900 375 312 139 19 chr9 41403431 41403640 -82672532 - L3b LINE CR1 -148 334 101 6 900 504 0 0 0 chr9 41404426 41404482 -82671690 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 900 206 216 0 0 chr9 41404591 41404628 -82671544 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 900 314 266 41 6 chr9 41404868 41405038 -82671134 + (TA)n Simple_repeat Simple_repeat 2 177 0 6 900 201 346 125 45 chr9 41406569 41406793 -82669379 - L3 LINE CR1 -272 4217 3976 6 900 724 324 10 35 chr9 41407077 41407365 -82668807 - B4 SINE B4 -11 281 1 6 900 442 184 9 18 chr9 41408275 41408386 -82667786 + CT-rich Low_complexity Low_complexity 4 113 0 6 900 515 139 53 53 chr9 41408426 41408540 -82667632 - B3 SINE B2 -9 207 94 6 900 243 339 0 0 chr9 41408741 41408800 -82667372 + polypurine Low_complexity Low_complexity 2 60 0 6 900 327 301 77 0 chr9 41409007 41409150 -82667022 - MER5A DNA MER1_type -35 154 1 6 900 189 281 36 24 chr9 41409172 41409256 -82666916 - L3 LINE CR1 -338 4151 4067 6 900 251 303 152 0 chr9 41409259 41409358 -82666814 - PB1D10 SINE Alu -1 116 3 6 900 504 0 0 0 chr9 41409473 41409529 -82666643 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 900 280 148 0 32 chr9 41409814 41409866 -82666306 + GA-rich Low_complexity Low_complexity 3 53 0 6 900 1097 114 11 0 chr9 41409866 41410042 -82666130 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 6 900 679 290 26 69 chr9 41410061 41410365 -82665807 + B4A SINE B4 2 292 0 6 900 260 317 107 8 chr9 41411269 41411390 -82664782 - L2c LINE L2 -1 3386 3254 6 900 481 305 8 0 chr9 41412113 41412231 -82663941 + PB1D7 SINE Alu 2 120 0 6 900 1232 248 80 34 chr9 41412367 41412718 -82663454 - ORR1D2 LTR MaLR -1 369 3 6 900 510 17 0 0 chr9 41413026 41413085 -82663087 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 900 369 0 0 0 chr9 41413085 41413125 -82663047 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 900 205 152 0 0 chr9 41415157 41415190 -82660982 + (TGG)n Simple_repeat Simple_repeat 3 35 0 6 900 378 0 0 0 chr9 41415415 41415457 -82660715 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 900 243 0 0 0 chr9 41416130 41416157 -82660015 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 900 480 342 64 34 chr9 41416236 41416469 -82659703 - B4A SINE B4 -50 242 3 6 900 304 264 13 13 chr9 41416654 41416811 -82659361 + (TATATG)n Simple_repeat Simple_repeat 3 159 0 6 900 503 175 11 33 chr9 41416775 41416958 -82659214 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 900 765 321 37 21 chr9 41417516 41417758 -82658414 + B4 SINE B4 45 290 -2 6 900 432 0 0 0 chr9 41417793 41417841 -82658331 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 900 22 0 0 0 chr9 41418109 41418131 -82658041 + AT_rich Low_complexity Low_complexity 1 22 0 6 901 22 0 0 0 chr9 41419811 41419833 -82656339 + GC_rich Low_complexity Low_complexity 1 22 0 6 901 194 150 25 0 chr9 41420206 41420246 -82655926 + CT-rich Low_complexity Low_complexity 2 42 0 6 901 444 273 133 40 chr9 41424166 41424391 -82651781 + MLT1C LTR MaLR 214 459 -8 6 901 350 317 84 98 chr9 41424990 41425193 -82650979 + ID_B1 SINE B4 23 222 -2 6 901 528 16 0 0 chr9 41426085 41426146 -82650026 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 901 378 0 0 0 chr9 41426146 41426187 -82649985 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 901 394 226 28 19 chr9 41427822 41427930 -82648242 + MLT1D LTR MaLR 394 502 -3 6 901 914 120 23 0 chr9 41428563 41428738 -82647434 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 6 901 865 229 70 45 chr9 41428743 41428944 -82647228 - ID_B1 SINE B4 -16 208 3 6 901 302 0 26 0 chr9 41428958 41428996 -82647176 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 6 901 967 297 15 16 chr9 41429174 41429436 -82646736 + ID_B1 SINE B4 1 262 -30 6 901 587 277 60 47 chr9 41429453 41429688 -82646484 - Tigger9b DNA MER2_type -363 261 24 6 901 460 290 96 67 chr9 41430025 41430339 -82645833 - L1MEc LINE L1 -463 5874 5552 6 901 391 241 148 31 chr9 41430345 41430557 -82645615 - L1MEc LINE L1 -2434 3885 3648 6 901 491 320 89 83 chr9 41430561 41430694 -82645478 - Lx9 LINE L1 -1 7472 7330 6 901 1089 106 0 0 chr9 41430694 41430874 -82645298 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 901 592 301 86 48 chr9 41430874 41431200 -82644972 - Lx9 LINE L1 -211 7433 7010 6 901 338 302 34 76 chr9 41431291 41431553 -82644619 - L1MEc LINE L1 -4424 1976 1726 6 901 198 0 0 0 chr9 41431664 41431686 -82644486 + (T)n Simple_repeat Simple_repeat 1 22 0 6 901 1312 34 0 0 chr9 41431688 41431835 -82644337 - B1_Mus2 SINE Alu 0 147 1 6 901 448 295 174 28 chr9 41432443 41433154 -82643018 - L1MEc LINE L1 -4913 1487 673 6 901 333 114 310 26 chr9 41433657 41433773 -82642399 - B2_Mm2 SINE B2 0 195 47 6 901 1327 102 11 0 chr9 41433849 41434025 -82642147 - B2_Mm1t SINE B2 -15 178 1 6 901 213 286 0 0 chr9 41434244 41434293 -82641879 - ID4_ SINE ID -19 64 16 6 901 274 217 28 28 chr9 41434556 41434627 -82641545 + ID2 SINE ID 1 71 -12 6 901 222 156 0 0 chr9 41434748 41434793 -82641379 + CT-rich Low_complexity Low_complexity 3 47 0 6 901 403 361 0 0 chr9 41436392 41436511 -82639661 + B3A SINE B2 2 120 -78 6 901 966 227 234 13 chr9 41437000 41437303 -82638869 - ORR1D2 LTR MaLR 0 370 1 6 901 621 0 0 0 chr9 41437532 41437601 -82638571 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 6 901 603 261 15 8 chr9 41437601 41437732 -82638440 - B1_Mur1 SINE Alu -12 137 6 6 901 4308 119 16 13 chr9 41437935 41438607 -82637565 - L1_Mur2 LINE L1 -610 5267 4594 6 901 4805 131 12 3 chr9 41438608 41439296 -82636876 + Lx4A LINE L1 6365 7058 0 6 901 1275 280 37 24 chr9 41439309 41439766 -82636406 + L1MA8 LINE L1 5536 5998 -293 6 901 606 317 168 29 chr9 41440985 41441336 -82634836 + MLT1A1 LTR MaLR 1 400 -8 6 901 277 296 27 36 chr9 41441577 41441689 -82634483 + L1MB3 LINE L1 6045 6155 -28 6 901 697 273 40 15 chr9 41441694 41441895 -82634277 - B3 SINE B2 -9 207 2 6 901 1405 197 56 130 chr9 41442104 41442513 -82633659 - MTE2a LTR MaLR 0 379 1 6 901 206 154 26 0 chr9 41443220 41443259 -82632913 + CT-rich Low_complexity Low_complexity 4 43 0 6 901 297 109 0 0 chr9 41444636 41444682 -82631490 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 901 245 98 24 0 chr9 41445727 41445768 -82630404 + (TC)n Simple_repeat Simple_repeat 2 43 0 7 901 373 273 198 17 chr9 41446484 41446661 -82629511 - B3A SINE B2 -13 203 12 7 901 1858 280 54 27 chr9 41447137 41448144 -82628028 + L1MA6 LINE L1 4399 5443 -857 7 901 509 259 139 10 chr9 41448245 41448547 -82627625 + L1MA6 LINE L1 5596 5949 -351 7 901 1042 181 87 10 chr9 41448547 41448742 -82627430 + B3 SINE B2 1 210 -6 7 901 509 218 29 36 chr9 41448742 41448792 -82627380 + L1MA6 LINE L1 5950 6000 -300 7 901 21 36 0 0 chr9 41448906 41448934 -82627238 + AT_rich Low_complexity Low_complexity 1 28 0 7 901 918 148 0 0 chr9 41450406 41450568 -82625604 + (GGATG)n Simple_repeat Simple_repeat 4 165 0 7 901 329 294 10 0 chr9 41450574 41450676 -82625496 + GA-rich Low_complexity Low_complexity 4 106 0 7 901 264 350 16 16 chr9 41451012 41451134 -82625038 + Lx8 LINE L1 7040 7161 -312 7 901 712 259 148 142 chr9 41451425 41451763 -82624409 - MTE2a LTR MaLR -31 348 9 7 901 3476 66 0 12 chr9 41451981 41452393 -82623779 + MTB_Mm LTR MaLR 1 407 0 7 901 263 233 11 0 chr9 41452436 41452498 -82623674 + BC1_Mm scRNA scRNA 12 76 -7 7 901 295 390 66 0 chr9 41454634 41454770 -82621402 + MIRb SINE MIR 53 197 -65 7 901 231 231 0 0 chr9 41455093 41455145 -82621027 + T-rich Low_complexity Low_complexity 1 52 0 7 901 615 101 27 9 chr9 41455145 41455255 -82620917 + (TTCC)n Simple_repeat Simple_repeat 2 113 0 7 901 372 242 0 0 chr9 41455249 41455344 -82620828 + CT-rich Low_complexity Low_complexity 6 100 0 7 901 963 82 0 0 chr9 41455347 41455481 -82620691 + (TTTC)n Simple_repeat Simple_repeat 2 135 0 7 901 669 204 44 0 chr9 41455494 41455631 -82620541 - B1_Mur4 SINE Alu 0 150 8 7 901 882 311 99 15 chr9 41456200 41456592 -82619580 + LTR40b LTR ERVL 3 427 -35 7 901 270 303 118 14 chr9 41456748 41456913 -82619259 - MIRb SINE MIR -45 223 35 7 901 1710 32 16 0 chr9 41457095 41457284 -82618888 - B2_Mm1a SINE B2 0 193 2 7 901 432 269 7 72 chr9 41458269 41458421 -82617751 - Lx9 LINE L1 -490 7154 7013 7 901 773 278 23 27 chr9 41458405 41458664 -82617508 + Lx9 LINE L1 7180 7437 -207 7 901 1259 246 60 118 chr9 41459118 41459515 -82616657 + MTE2b LTR MaLR 6 379 0 7 901 337 213 143 30 chr9 41460827 41460943 -82615229 - B4 SINE B4 -19 273 128 7 901 839 37 9 0 chr9 41460964 41461071 -82615101 + (TC)n Simple_repeat Simple_repeat 2 109 0 7 901 288 53 0 0 chr9 41461071 41461108 -82615064 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 901 231 70 99 0 chr9 41461343 41461414 -82614758 + T-rich Low_complexity Low_complexity 1 78 0 7 901 1237 55 0 14 chr9 41461414 41461562 -82614610 - B1_Mm SINE Alu 0 147 2 7 901 797 59 8 25 chr9 41461664 41461786 -82614386 - L1Md_F2 LINE L1 0 6582 6463 7 901 3531 42 0 0 chr9 41461786 41462195 -82613977 + L1Md_F2 LINE L1 5970 6378 -204 7 901 530 301 30 15 chr9 41464891 41465026 -82611146 + RSINE1 SINE B4 13 149 -16 7 901 375 113 0 0 chr9 41465035 41465097 -82611075 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 901 452 333 83 47 chr9 41465856 41465896 -82610276 + MER58B DNA MER1_type 1 40 -301 7 901 266 0 39 58 chr9 41465896 41465948 -82610224 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 7 901 452 333 83 47 chr9 41465948 41466122 -82610050 + MER58B DNA MER1_type 41 218 -123 7 901 284 44 44 0 chr9 41466122 41466167 -82610005 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 901 452 333 83 47 chr9 41466167 41466228 -82609944 + MER58B DNA MER1_type 219 286 -55 7 901 732 80 0 0 chr9 41466826 41466926 -82609246 + (TATATG)n Simple_repeat Simple_repeat 6 105 0 7 901 21 0 0 0 chr9 41466977 41466998 -82609174 + AT_rich Low_complexity Low_complexity 1 21 0 7 901 393 169 0 0 chr9 41467006 41467071 -82609101 + ORR1C1 LTR MaLR 314 378 0 7 901 1252 223 130 52 chr9 41467133 41467611 -82608561 - L1MB3 LINE L1 -106 6077 5563 7 901 399 319 14 35 chr9 41467849 41467992 -82608180 - RSINE1 SINE B4 -24 141 2 7 901 217 360 97 3 chr9 41469369 41469473 -82606699 + MIRb SINE MIR 41 157 -111 7 901 839 94 27 0 chr9 41469482 41469631 -82606541 + (TCTA)n Simple_repeat Simple_repeat 4 156 0 7 901 552 36 36 0 chr9 41469675 41469758 -82606414 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 7 901 24 0 0 0 chr9 41469829 41469853 -82606319 + AT_rich Low_complexity Low_complexity 1 24 0 7 901 382 302 0 8 chr9 41469960 41470087 -82606085 - L1MA6 LINE L1 -5 6295 6170 7 901 652 248 0 8 chr9 41470387 41470513 -82605659 + ID_B1 SINE B4 90 214 -10 7 901 468 0 0 0 chr9 41470532 41470584 -82605588 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 901 252 86 0 0 chr9 41471487 41471522 -82604650 + (AGTTG)n Simple_repeat Simple_repeat 5 39 0 7 901 26 0 0 0 chr9 41475770 41475796 -82600376 + AT_rich Low_complexity Low_complexity 1 26 0 7 901 252 358 0 0 chr9 41476138 41476205 -82599967 - Lx8 LINE L1 -273 7200 7134 7 901 3406 53 10 8 chr9 41476219 41476618 -82599554 + MTB LTR MaLR 1 400 0 7 901 693 254 139 0 chr9 41476675 41476876 -82599296 - Lx8 LINE L1 -313 7160 6932 7 901 504 209 26 20 chr9 41476881 41477032 -82599140 - L1MCa LINE L1 -5394 1114 963 7 901 444 19 0 0 chr9 41477276 41477329 -82598843 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 901 234 0 0 0 chr9 41477652 41477678 -82598494 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 901 531 69 0 0 chr9 41477678 41477749 -82598423 + (TA)n Simple_repeat Simple_repeat 2 73 0 7 901 2138 109 3 113 chr9 41477887 41478249 -82597923 - ORR1A3 LTR MaLR 0 326 5 7 901 1070 247 151 11 chr9 41478775 41479127 -82597045 + MTD LTR MaLR 19 419 0 7 901 390 315 27 7 chr9 41479474 41479624 -82596548 + Lx8 LINE L1 7065 7217 -256 7 901 355 269 86 37 chr9 41479728 41479890 -82596282 + RMER15 LTR ERVL 406 575 0 7 901 627 259 18 91 chr9 41480126 41480402 -82595770 + L1M3 LINE L1 4584 4839 -1301 7 901 219 69 0 0 chr9 41480619 41480648 -82595524 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 901 227 246 35 17 chr9 41481195 41481253 -82594919 - tRNA-Ala-GCA tRNA tRNA -3 72 14 7 901 274 285 128 27 chr9 41481384 41481532 -82594640 - MIRb SINE MIR -108 168 6 7 901 393 117 0 0 chr9 41482103 41482163 -82594009 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 901 446 283 11 11 chr9 41482187 41482280 -82593892 - B1F1 SINE Alu -52 97 5 7 901 1492 212 82 9 chr9 41482535 41482878 -82593294 - ORR1D1 LTR MaLR -6 368 1 7 901 650 281 43 40 chr9 41484524 41484777 -82591395 + B4A SINE B4 5 274 -18 7 901 227 321 101 13 chr9 41485577 41485735 -82590437 - LTR16B1 LTR ERVL 0 480 309 7 901 520 306 128 21 chr9 41486380 41486567 -82589605 + Tigger5 DNA MER2_type 1 207 -2199 7 901 387 316 9 0 chr9 41486578 41486692 -82589480 + Tigger5 DNA MER2_type 2291 2405 -1 7 901 281 336 45 32 chr9 41486852 41487006 -82589166 + MIR3 SINE MIR 38 193 -15 7 901 270 211 29 143 chr9 41487084 41487189 -82588983 + RMER15 LTR ERVL 3 95 -480 7 901 453 296 7 40 chr9 41487284 41487432 -82588740 + RMER15 LTR ERVL 275 417 -158 7 901 3695 63 35 2 chr9 41487693 41488151 -82588021 - L1_Mus1 LINE L1 0 6567 6095 7 901 2614 74 3 58 chr9 41488299 41488645 -82587527 - ORR1A2 LTR MaLR 0 327 1 7 901 225 380 0 0 chr9 41490819 41490890 -82585282 + MLT1J2 LTR MaLR 72 142 -306 7 901 1387 274 5 108 chr9 41491544 41491962 -82584210 - MTE2b LTR MaLR -4 375 1 7 901 272 340 75 75 chr9 41492352 41492632 -82583540 + ORR1D2 LTR MaLR 87 366 -4 7 901 181 270 76 63 chr9 41492674 41492753 -82583419 - L3b LINE CR1 -351 131 52 7 901 1513 319 63 39 chr9 41493184 41493290 -82582882 - Lx9 LINE L1 -6 7467 7331 7 901 297 0 0 0 chr9 41493290 41493323 -82582849 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 901 1718 294 18 59 chr9 41493323 41493960 -82582212 - Lx9 LINE L1 -191 7453 6706 7 901 1371 317 38 58 chr9 41493982 41494588 -82581584 + Lx9 LINE L1 6273 6866 -778 7 901 673 317 41 24 chr9 41496038 41496284 -82579888 - L1MC LINE L1 -2119 5763 5514 7 901 429 109 0 0 chr9 41496846 41496910 -82579262 + (TCC)n Simple_repeat Simple_repeat 3 66 0 7 901 302 354 58 50 chr9 41496971 41497212 -82578960 - L1M5 LINE L1 -947 5199 4957 7 901 873 237 77 21 chr9 41497447 41497641 -82578531 + B3 SINE B2 5 209 -7 7 901 6330 180 42 11 chr9 41497651 41498803 -82577369 - Lx5 LINE L1 -1 7049 5862 7 901 441 36 0 0 chr9 41498879 41498934 -82577238 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 901 214 281 58 45 chr9 41499161 41499238 -82576934 - B4A SINE B4 -212 80 4 7 901 2132 34 8 4 chr9 41499733 41500000 -82576172 - MTA_Mm LTR MaLR 0 396 129 7 901 1050 8 0 0 chr9 41500000 41500128 -82576044 - MTA_Mm LTR MaLR -268 128 1 1 901 2424 161 19 46 chr9 41500487 41500918 -82575254 - MTC LTR MaLR -2 419 1 2 901 180 0 0 0 chr9 41502193 41502213 -82573959 + (T)n Simple_repeat Simple_repeat 1 20 0 3 901 685 168 56 0 chr9 41502237 41502362 -82573810 + B1_Mus1 SINE Alu 10 141 -7 4 901 303 28 0 0 chr9 41502510 41502546 -82573626 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 901 2724 200 36 37 chr9 41502546 41503164 -82573008 - Lx9 LINE L1 -226 7418 6802 6 901 446 298 12 64 chr9 41503268 41503440 -82572732 - RSINE1 SINE B4 0 165 3 7 901 287 291 131 37 chr9 41503625 41504007 -82572165 - L1M5 LINE L1 -1227 4919 4502 8 901 485 259 116 48 chr9 41504125 41504271 -82571901 - B3 SINE B2 -46 170 15 9 901 3021 57 13 3 chr9 41504277 41504662 -82571510 - L1Md_F2 LINE L1 -12 6570 6182 1 901 315 0 0 0 chr9 41505728 41505763 -82570409 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 901 657 25 0 0 chr9 41506643 41506722 -82569450 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 901 609 124 0 0 chr9 41508496 41508593 -82567579 + (TC)n Simple_repeat Simple_repeat 1 97 0 1 901 254 302 23 23 chr9 41509514 41509602 -82566570 - L1MC3 LINE L1 -11 7774 7687 1 901 402 289 59 0 chr9 41512146 41512281 -82563891 + ID_B1 SINE B4 81 223 -1 1 901 315 210 50 10 chr9 41512328 41512429 -82563743 - L1MA7 LINE L1 -1 6290 6186 1 901 1000 246 9 110 chr9 41513121 41513440 -82562732 + B4 SINE B4 6 292 0 1 901 268 355 17 17 chr9 41513550 41513725 -82562447 + MER121 Unknown Unknown 58 232 -180 1 901 198 0 0 0 chr9 41514730 41514752 -82561420 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 901 620 295 100 14 chr9 41514771 41514977 -82561195 + B4A SINE B4 4 227 -65 2 901 329 221 0 105 chr9 41514977 41515063 -82561109 + ID4_ SINE ID 1 77 -6 2 901 311 254 0 90 chr9 41515074 41515152 -82561020 + B4A SINE B4 222 292 0 2 901 229 163 41 0 chr9 41515173 41515222 -82560950 + (CAGAGA)n Simple_repeat Simple_repeat 6 56 0 2 901 555 220 0 0 chr9 41515225 41515707 -82560465 + (CA)n Simple_repeat Simple_repeat 1 482 0 2 901 180 0 0 0 chr9 41517086 41517106 -82559066 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 901 755 217 17 11 chr9 41517282 41517459 -82558713 + RMER10A LTR ERVL 1 178 -264 2 901 986 148 80 20 chr9 41517452 41517670 -82558502 - ORR1B1 LTR MaLR -186 208 1 2 901 625 263 19 25 chr9 41518185 41518345 -82557827 + RSINE1 SINE B4 4 162 -3 2 901 3489 40 19 2 chr9 41518505 41518935 -82557237 - L1Md_F3 LINE L1 -2 6582 6146 2 901 372 317 103 91 chr9 41519066 41519396 -82556776 + MTEa LTR MaLR 5 338 -41 2 901 728 191 177 113 chr9 41519487 41519753 -82556419 + MTE2a LTR MaLR 97 379 0 3 901 21 0 0 0 chr9 41519829 41519850 -82556322 + AT_rich Low_complexity Low_complexity 1 21 0 3 901 279 114 0 0 chr9 41520678 41520722 -82555450 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 901 892 269 10 0 chr9 41521232 41521440 -82554732 + B3 SINE B2 2 211 -5 3 901 225 227 30 0 chr9 41522017 41522083 -82554089 + A-rich Low_complexity Low_complexity 2 69 0 3 901 1461 233 50 0 chr9 41522325 41522668 -82553504 - ORR1D2 LTR MaLR -5 365 6 3 901 24 0 0 0 chr9 41522678 41522702 -82553470 + AT_rich Low_complexity Low_complexity 1 24 0 3 901 818 326 90 55 chr9 41523250 41523763 -82552409 - MLT1F2 LTR MaLR -10 559 29 3 901 1018 221 97 76 chr9 41524062 41524404 -82551768 + MTE2a LTR MaLR 1 349 -30 3 901 302 300 25 0 chr9 41524445 41524525 -82551647 + ID_B1 SINE B4 104 185 -39 3 901 280 244 54 65 chr9 41524525 41524537 -82551635 + PB1D7 SINE Alu 23 113 -7 4 901 387 0 0 0 chr9 41525463 41525506 -82550666 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 901 515 343 0 0 chr9 41525703 41525837 -82550335 - RSINE1 SINE B4 -29 136 3 4 901 245 254 130 9 chr9 41527538 41527653 -82548519 + MER5A1 DNA MER1_type 27 155 -11 4 901 478 381 5 0 chr9 41527677 41527866 -82548306 + MER58A DNA MER1_type 7 196 -28 4 901 219 274 15 46 chr9 41528092 41528157 -82548015 + PB1D10 SINE Alu 15 77 -40 4 901 348 64 0 0 chr9 41528495 41528542 -82547630 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 4 901 368 154 0 32 chr9 41528542 41528636 -82547536 - Lx4B LINE L1 -13 7045 6955 4 901 5023 55 11 3 chr9 41528651 41529305 -82546867 - L1Md_F2 LINE L1 0 6582 5943 4 901 495 288 143 4 chr9 41529356 41529621 -82546551 + MLT1A0 LTR MaLR 1 302 -63 4 901 1069 321 70 19 chr9 41529679 41530107 -82546065 - MLT1F1 LTR MaLR -49 520 71 5 901 363 278 66 102 chr9 41530302 41530333 -82545839 - B2_Mm2 SINE B2 -2 193 161 5 901 372 43 0 0 chr9 41530333 41530379 -82545793 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 901 694 277 7 25 chr9 41530379 41530543 -82545629 - B3A SINE B2 -34 164 5 5 901 265 321 0 0 chr9 41530615 41530696 -82545476 + ID4_ SINE ID 3 83 0 5 901 1328 78 0 15 chr9 41530948 41531143 -82545029 - RLTR23 LTR ERV1 -238 192 1 5 901 393 228 25 0 chr9 41531207 41531286 -82544886 + ORR1E LTR MaLR 20 100 -259 5 901 1955 182 81 7 chr9 41531360 41531769 -82544403 + BGLII_B LTR ERVK 1 439 -2 5 901 270 0 0 0 chr9 41531833 41531863 -82544309 + (CCA)n Simple_repeat Simple_repeat 1 30 0 5 901 225 330 0 44 chr9 41531933 41532047 -82544125 + ORR1E LTR MaLR 226 334 -45 5 901 688 230 20 7 chr9 41532051 41532200 -82543972 + B3A SINE B2 2 152 -46 5 901 546 54 0 0 chr9 41532201 41532275 -82543897 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 901 527 275 61 104 chr9 41532780 41533060 -82543112 + B4 SINE B4 3 270 -22 6 901 554 265 0 22 chr9 41534104 41534239 -82541933 - B1_Mur1 SINE Alu -13 136 5 6 901 476 276 74 51 chr9 41535531 41535707 -82540465 + B3A SINE B2 1 180 -18 6 901 311 296 74 0 chr9 41536252 41536360 -82539812 + PB1D10 SINE Alu 1 116 -1 6 901 464 230 30 0 chr9 41536373 41536538 -82539634 + GA-rich Low_complexity Low_complexity 1 170 0 6 901 432 360 7 0 chr9 41536742 41536895 -82539277 - MT2A LTR ERVL -101 432 279 6 901 247 327 91 0 chr9 41536968 41537078 -82539094 - MTE2a LTR MaLR -259 120 1 6 901 966 237 5 5 chr9 41537078 41537286 -82538886 + B3 SINE B2 2 209 -7 6 901 407 301 70 9 chr9 41537997 41538212 -82537960 - MLT1C LTR MaLR -173 294 67 6 901 211 111 0 27 chr9 41538249 41538286 -82537886 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 6 901 540 0 0 0 chr9 41538286 41538346 -82537826 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 901 252 265 176 0 chr9 41538502 41538570 -82537602 + ID SINE ID 5 84 -140 7 901 244 260 26 13 chr9 41538730 41538808 -82537364 - MADE2 DNA Mariner 0 80 2 7 901 432 0 0 0 chr9 41539157 41539205 -82536967 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 901 972 260 103 23 chr9 41540936 41541309 -82534863 + MTD LTR MaLR 1 399 -20 7 901 306 0 0 0 chr9 41541725 41541759 -82534413 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 901 1109 287 8 0 chr9 41541759 41542013 -82534159 - B4 SINE B4 -36 256 1 7 901 420 118 0 0 chr9 41542541 41542609 -82533563 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 901 294 29 0 0 chr9 41542710 41542745 -82533427 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 901 222 289 0 0 chr9 41542745 41542797 -82533375 + (TATG)n Simple_repeat Simple_repeat 1 52 0 7 901 225 260 183 0 chr9 41542798 41542902 -82533270 - RMER12 LTR ERVK -472 850 728 8 901 288 0 0 0 chr9 41543414 41543446 -82532726 + (T)n Simple_repeat Simple_repeat 1 32 0 8 901 207 254 16 16 chr9 41544616 41544680 -82531492 + C-rich Low_complexity Low_complexity 5 68 0 8 901 364 348 28 32 chr9 41547698 41547915 -82528257 - MIR SINE MIR -2 260 45 8 902 256 308 15 0 chr9 41550241 41550306 -82525866 + ID4 SINE ID 12 77 -6 8 902 582 15 0 0 chr9 41550629 41550696 -82525476 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 8 902 255 31 0 0 chr9 41550982 41551014 -82525158 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 8 902 369 256 13 0 chr9 41551927 41552005 -82524167 + 5S rRNA rRNA 12 90 -31 8 902 183 114 0 0 chr9 41552005 41552040 -82524132 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 8 902 251 299 12 61 chr9 41552087 41552169 -82524003 - ID_B1 SINE B4 -2 222 145 8 902 317 338 62 48 chr9 41552193 41552401 -82523771 - Lx8 LINE L1 -8 7465 7255 9 902 701 150 8 0 chr9 41552430 41552563 -82523609 + GA-rich Low_complexity Low_complexity 4 137 0 9 902 1399 283 47 41 chr9 41552571 41553035 -82523137 - Lx8 LINE L1 -257 7216 6750 9 902 373 250 24 0 chr9 41553040 41553124 -82523048 - B3 SINE B2 -130 86 1 9 902 216 0 0 0 chr9 41553149 41553173 -82522999 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 902 461 365 94 45 chr9 41555869 41556271 -82519901 + MLT1J1 LTR MaLR 9 430 -14 9 902 516 303 123 33 chr9 41558257 41558680 -82517492 - L1ME4a LINE L1 -266 5858 5398 9 902 22 70 0 0 chr9 41558794 41558837 -82517335 + AT_rich Low_complexity Low_complexity 1 43 0 9 902 655 230 32 120 chr9 41559233 41559450 -82516722 - B3A SINE B2 0 198 1 9 902 325 172 107 97 chr9 41560082 41560185 -82515987 - L1M5 LINE L1 -2978 3168 3065 9 902 676 275 5 71 chr9 41560967 41561163 -82515009 - B3A SINE B2 -15 183 1 9 902 264 30 0 0 chr9 41562260 41562293 -82513879 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 902 606 75 0 0 chr9 41562294 41562387 -82513785 + (GA)n Simple_repeat Simple_repeat 1 93 0 1 902 213 303 0 0 chr9 41562390 41562456 -82513716 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 902 830 290 28 110 chr9 41563957 41564283 -82511889 - MTEa LTR MaLR -80 299 1 1 902 491 335 79 32 chr9 41564286 41564486 -82511686 + MLT2B4 LTR ERVL 210 412 -144 1 902 645 49 0 0 chr9 41564486 41564567 -82511605 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 902 491 299 94 88 chr9 41564567 41564680 -82511492 + MLT2B4 LTR ERVL 381 514 -6 1 902 406 227 0 0 chr9 41565184 41565250 -82510922 - ID4_ SINE ID -16 67 2 1 902 1923 182 113 16 chr9 41565529 41565909 -82510263 - MTD LTR MaLR -2 417 1 1 902 452 327 35 116 chr9 41566267 41566699 -82509473 + MLT1C LTR MaLR 4 390 0 1 902 370 331 57 8 chr9 41567269 41567391 -82508781 + RSINE1 SINE B4 2 129 -36 1 902 426 222 23 45 chr9 41569311 41569443 -82506729 - MLT1G1 LTR MaLR -450 129 1 1 902 271 231 0 44 chr9 41569452 41569520 -82506652 + L2a LINE L2 3362 3426 0 1 902 810 164 0 0 chr9 41569859 41570005 -82506167 + (TATTG)n Simple_repeat Simple_repeat 3 148 0 1 902 917 247 6 0 chr9 41570141 41570219 -82505953 + ID SINE ID 3 81 -143 1 902 337 298 23 68 chr9 41570219 41570352 -82505820 + B1_Mus2 SINE Alu 1 127 -20 1 902 328 359 84 43 chr9 41571571 41571985 -82504187 + HAL1 LINE L1 1811 2241 -266 1 902 1089 260 63 52 chr9 41572914 41573263 -82502909 + ORR1D2 LTR MaLR 1 353 -17 1 902 401 115 13 0 chr9 41573347 41573425 -82502747 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 902 249 109 0 0 chr9 41573498 41573544 -82502628 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 1 902 259 337 98 0 chr9 41574584 41574747 -82501425 - L3b LINE CR1 -115 367 189 1 902 439 285 24 24 chr9 41575088 41575214 -82500958 - ID_B1 SINE B4 -21 203 78 1 902 564 15 0 0 chr9 41575216 41575281 -82500891 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 902 180 346 74 9 chr9 41575655 41575763 -82500409 + MIRb SINE MIR 86 200 -68 1 902 194 286 161 21 chr9 41576859 41576952 -82499220 - MIRb SINE MIR 0 268 163 1 902 1730 233 19 65 chr9 41577256 41577673 -82498499 - MTD LTR MaLR -2 417 20 1 902 920 146 6 0 chr9 41577677 41577841 -82498331 + (TA)n Simple_repeat Simple_repeat 1 165 0 1 902 638 337 149 44 chr9 41578017 41578492 -82497680 + MLT1G1 LTR MaLR 1 525 -54 1 902 1160 87 0 0 chr9 41578548 41578686 -82497486 + B1_Mm SINE Alu 2 139 -8 1 902 918 117 0 0 chr9 41578768 41578947 -82497225 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 902 187 313 59 15 chr9 41579262 41579330 -82496842 - MIRb SINE MIR -188 80 10 1 902 289 279 0 12 chr9 41579387 41579467 -82496705 - ID4_ SINE ID -3 80 2 1 902 270 176 0 0 chr9 41579642 41579693 -82496479 + GA-rich Low_complexity Low_complexity 2 52 0 1 902 766 258 37 58 chr9 41581792 41582241 -82493931 + RLTR11A2 LTR ERVK 1 494 -34 1 902 200 295 38 13 chr9 41582922 41583001 -82493171 + L2c LINE L2 3019 3099 -288 1 902 4433 35 2 0 chr9 41584695 41585184 -82490988 - L1Md_F2 LINE L1 -15 6567 6078 1 902 355 265 122 0 chr9 41585376 41585474 -82490698 - U1 snRNA snRNA -54 111 2 1 902 185 288 19 142 chr9 41585527 41585689 -82490483 - L2 LINE L2 -453 2966 2825 1 902 375 301 56 133 chr9 41585889 41586226 -82489946 + ORR1E LTR MaLR 44 354 -5 1 902 797 285 164 35 chr9 41586229 41586681 -82489491 + ORR1E-int LTR MaLR 1 510 -1070 1 902 1130 322 106 27 chr9 41586683 41587277 -82488895 + Lx8 LINE L1 6828 7468 -5 1 902 3143 30 3 0 chr9 41587297 41587663 -82488509 + L1Md_F2 LINE L1 6147 6513 -69 1 902 372 325 132 43 chr9 41587741 41588021 -82488151 + ORR1E-int LTR MaLR 654 958 -622 1 902 597 286 76 78 chr9 41588032 41588808 -82487364 + L1M2 LINE L1 1607 2383 -3464 1 902 231 268 174 62 chr9 41588832 41589027 -82487145 + RMER15 LTR ERVL 9 225 -350 1 902 300 258 90 0 chr9 41589098 41589187 -82486985 + RMER15 LTR ERVL 477 573 -2 1 902 927 308 16 30 chr9 41589362 41589666 -82486506 + ORR1E-int LTR MaLR 1246 1545 -35 1 902 267 265 78 22 chr9 41589914 41590016 -82486156 + MTE2a LTR MaLR 272 379 0 1 902 509 311 84 84 chr9 41590412 41590696 -82485476 - B4 SINE B4 -4 288 5 1 902 1567 215 78 55 chr9 41593501 41593899 -82482273 - MTD LTR MaLR 0 419 13 1 902 255 181 139 0 chr9 41594006 41594078 -82482094 - L1M LINE L1 -904 5393 5312 1 902 504 0 0 0 chr9 41594082 41594138 -82482034 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 902 1247 294 49 15 chr9 41594155 41594622 -82481550 + L1_Rod LINE L1 5351 5833 -14 1 902 712 259 8 123 chr9 41594628 41594715 -82481457 - MT2A LTR ERVL -148 385 302 1 902 2205 123 9 55 chr9 41594715 41595058 -82481114 - ORR1A2 LTR MaLR 0 327 1 1 902 712 259 8 123 chr9 41595058 41595230 -82480942 - MT2A LTR ERVL -232 301 156 1 902 318 157 0 0 chr9 41595292 41595343 -82480829 - MTD LTR MaLR -326 53 3 1 902 1049 292 47 23 chr9 41595767 41596149 -82480023 + MLT2B2 LTR ERVL 57 542 -20 1 902 229 185 15 15 chr9 41596149 41596215 -82479957 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1 902 238 245 118 0 chr9 41597158 41597271 -82478901 + MIRb SINE MIR 34 159 -103 1 902 522 301 32 6 chr9 41597333 41597490 -82478682 - RSINE1 SINE B4 -1 164 4 1 902 186 143 0 0 chr9 41597725 41597760 -82478412 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 902 702 292 182 0 chr9 41597946 41598237 -82477935 + MLT1B LTR MaLR 10 353 -37 1 902 421 188 17 22 chr9 41599239 41599419 -82476753 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 1 902 22 70 0 0 chr9 41603173 41603216 -82472956 + AT_rich Low_complexity Low_complexity 1 43 0 1 902 864 188 7 20 chr9 41603259 41603406 -82472766 - B1_Mus1 SINE Alu -3 145 1 1 902 416 211 0 50 chr9 41603482 41603562 -82472610 - ID4_ SINE ID -7 76 1 1 902 182 254 36 0 chr9 41604164 41604219 -82471953 - L2b LINE L2 -234 3141 3085 1 902 280 295 92 45 chr9 41604438 41604586 -82471586 + MIRb SINE MIR 104 257 -5 1 902 271 245 138 0 chr9 41605284 41605378 -82470794 + Charlie5 DNA MER1_type 1 107 -2517 1 902 437 293 150 9 chr9 41605519 41605839 -82470333 + Charlie5 DNA MER1_type 2257 2621 -3 1 902 28 61 0 0 chr9 41606229 41606278 -82469894 + AT_rich Low_complexity Low_complexity 1 49 0 1 902 336 358 69 14 chr9 41606476 41606694 -82469478 - L1MD LINE L1 -1850 4296 4067 1 902 24 0 0 0 chr9 41606955 41606979 -82469193 + AT_rich Low_complexity Low_complexity 1 24 0 1 902 453 251 35 12 chr9 41607079 41607252 -82468920 + L1MA6 LINE L1 4401 4577 -1563 1 902 1821 184 40 14 chr9 41607274 41607622 -82468550 + ORR1B2 LTR MaLR 3 359 -8 1 902 1648 267 127 15 chr9 41607630 41608421 -82467751 + L1MA6 LINE L1 4600 5467 -824 1 902 895 147 269 0 chr9 41608421 41608577 -82467595 - B3 SINE B2 -17 199 2 1 902 751 278 100 48 chr9 41608577 41608831 -82467341 + L1MA6 LINE L1 5468 5735 -556 1 902 1209 63 0 7 chr9 41608839 41608983 -82467189 + B1_Mus2 SINE Alu 5 147 0 1 902 1431 45 0 0 chr9 41608986 41609165 -82467007 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 902 294 181 31 144 chr9 41609167 41609264 -82466908 + L1MA6 LINE L1 6011 6096 -204 1 902 1184 279 101 1 chr9 41609506 41610031 -82466141 + L1MDa LINE L1 1507 2081 -4552 1 902 429 186 0 0 chr9 41610477 41610547 -82465625 + ID2 SINE ID 5 74 -9 1 902 227 210 0 16 chr9 41610646 41610709 -82465463 + A-rich Low_complexity Low_complexity 6 67 0 1 902 183 72 0 67 chr9 41610717 41610762 -82465410 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 1 902 409 319 111 34 chr9 41610851 41611085 -82465087 + B4A SINE B4 41 292 0 1 902 353 102 17 0 chr9 41611125 41611184 -82464988 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 902 549 255 10 39 chr9 41611200 41611404 -82464768 + L1MDa LINE L1 2668 2865 -3672 1 902 466 230 93 36 chr9 41611546 41611686 -82464486 + B1F SINE Alu 1 148 -1 1 902 243 296 81 10 chr9 41611760 41611859 -82464313 - MIRc SINE MIR -120 148 43 1 902 283 332 137 20 chr9 41611904 41612101 -82464071 + MLT1J LTR MaLR 99 318 -194 1 902 27 29 0 0 chr9 41612226 41612260 -82463912 + AT_rich Low_complexity Low_complexity 1 34 0 1 902 3304 232 52 23 chr9 41614904 41615820 -82460352 - RCHARR1 DNA MER1_type 0 974 32 1 902 1226 224 136 3 chr9 41615841 41616105 -82460067 + ORR1C1 LTR MaLR 1 309 -69 1 902 210 71 0 0 chr9 41616105 41616133 -82460039 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 902 1226 224 136 3 chr9 41616133 41616200 -82459972 + ORR1C1 LTR MaLR 310 376 -2 1 902 243 333 29 19 chr9 41617084 41617188 -82458984 - MIR3 SINE MIR -25 183 79 1 902 348 200 0 0 chr9 41618670 41618745 -82457427 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 902 1359 235 100 12 chr9 41619655 41619995 -82456177 + MTE2b LTR MaLR 5 374 -5 1 902 21 36 0 0 chr9 41620337 41620365 -82455807 + AT_rich Low_complexity Low_complexity 1 28 0 1 902 494 43 14 0 chr9 41622642 41622711 -82453461 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 902 349 376 68 57 chr9 41623462 41624091 -82452081 - Tigger13a DNA MER2_type -108 663 28 1 902 808 258 97 66 chr9 41624143 41624462 -82451710 + ORR1E LTR MaLR 11 339 -20 1 902 346 38 0 37 chr9 41624939 41624993 -82451179 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 902 889 283 99 19 chr9 41625122 41625497 -82450675 + MTD LTR MaLR 1 405 -14 1 902 726 50 0 0 chr9 41627326 41627425 -82448747 + (TCTCTG)n Simple_repeat Simple_repeat 6 104 0 1 902 647 258 24 48 chr9 41627440 41627607 -82448565 - RSINE1 SINE B4 0 165 3 1 902 314 159 14 0 chr9 41627768 41627837 -82448335 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 1 902 335 248 57 41 chr9 41627918 41628040 -82448132 + L1M6 LINE L1 920 1043 -5453 1 902 465 71 19 48 chr9 41628198 41628302 -82447870 + (GGGAGA)n Simple_repeat Simple_repeat 6 106 0 1 902 303 216 9 18 chr9 41628853 41628966 -82447206 + GA-rich Low_complexity Low_complexity 2 113 0 1 902 1879 183 38 14 chr9 41631252 41631617 -82444555 - ORR1D1 LTR MaLR 0 374 1 1 902 844 247 95 24 chr9 41633261 41633568 -82442604 - L1MA4 LINE L1 -201 5967 5633 1 902 324 336 18 0 chr9 41633570 41633683 -82442489 - PB1D10 SINE Alu -1 116 2 2 902 287 220 363 0 chr9 41633925 41634016 -82442156 + RSINE1 SINE B4 6 129 -36 2 902 296 143 18 0 chr9 41634017 41634073 -82442099 + CT-rich Low_complexity Low_complexity 2 58 0 2 902 315 0 0 0 chr9 41635086 41635121 -82441051 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 902 229 246 0 0 chr9 41635141 41635206 -82440966 + (TCTCTG)n Simple_repeat Simple_repeat 6 70 0 2 902 338 121 0 49 chr9 41635207 41635268 -82440904 - HAL1-3A_ME LINE L1 -825 2033 1976 2 902 456 210 0 0 chr9 41635268 41635425 -82440747 + (TG)n Simple_repeat Simple_repeat 1 157 0 2 902 441 0 0 0 chr9 41635633 41635682 -82440490 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 902 399 204 103 69 chr9 41636485 41636601 -82439571 - ID_B1 SINE B4 -2 222 103 2 902 462 36 0 0 chr9 41636621 41636677 -82439495 + (TCTCCC)n Simple_repeat Simple_repeat 5 60 0 2 902 387 89 0 0 chr9 41636680 41636736 -82439436 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 902 654 245 118 20 chr9 41636787 41636991 -82439181 - B4A SINE B4 -66 226 3 2 902 360 282 14 0 chr9 41637925 41638050 -82438122 - ID4_ SINE ID -12 140 12 2 902 1868 185 65 25 chr9 41639443 41639843 -82436329 - MTD LTR MaLR -3 416 1 2 902 180 0 0 0 chr9 41639869 41639889 -82436283 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 902 1492 277 0 8 chr9 41640308 41640687 -82435485 - MTEb LTR MaLR -2 377 2 2 902 714 202 101 25 chr9 41641601 41641799 -82434373 - B3 SINE B2 -3 213 1 2 902 196 355 92 7 chr9 41641847 41641989 -82434183 + MIRb SINE MIR 26 179 -89 2 902 650 303 149 16 chr9 41643931 41644240 -82431932 - MTEa LTR MaLR -29 350 1 2 902 851 243 4 21 chr9 41644901 41645106 -82431066 - B3A SINE B2 -1 215 7 2 902 916 286 59 38 chr9 41645264 41645635 -82430537 - MTEa LTR MaLR 0 379 1 2 902 459 0 0 0 chr9 41646511 41646562 -82429610 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 902 510 96 0 0 chr9 41646817 41646890 -82429282 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 902 369 200 53 0 chr9 41646892 41646967 -82429205 - B3A SINE B2 -119 79 1 2 902 195 42 0 0 chr9 41647108 41647132 -82429040 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 902 391 329 45 13 chr9 41648025 41648179 -82427993 + MER5A DNA MER1_type 5 163 -26 2 902 822 256 45 25 chr9 41648204 41648448 -82427724 - MTE2b LTR MaLR -130 249 1 2 902 242 327 172 6 chr9 41649183 41649346 -82426826 - LTR16A LTR ERVL 0 451 262 2 902 396 259 193 1 chr9 41649803 41649924 -82426248 + B4 SINE B4 8 152 -140 2 902 678 241 0 0 chr9 41650106 41650458 -82425714 + (CA)n Simple_repeat Simple_repeat 1 352 0 2 902 618 247 0 0 chr9 41650484 41650662 -82425510 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 902 527 201 47 0 chr9 41650642 41650811 -82425361 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 2 902 615 256 0 0 chr9 41650790 41651154 -82425018 + (CA)n Simple_repeat Simple_repeat 1 364 0 2 902 364 252 6 6 chr9 41651168 41651324 -82424848 + (CA)n Simple_repeat Simple_repeat 1 156 0 2 902 597 253 0 0 chr9 41651340 41651518 -82424654 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 902 272 48 0 23 chr9 41651590 41651633 -82424539 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 902 204 163 0 0 chr9 41652476 41652519 -82423653 + T-rich Low_complexity Low_complexity 1 43 0 2 902 1142 35 35 0 chr9 41652526 41652668 -82423504 - B1_Mus1 SINE Alu 0 148 2 2 902 866 138 7 37 chr9 41653158 41653429 -82422743 + CT-rich Low_complexity Low_complexity 1 262 0 2 902 183 80 0 0 chr9 41653429 41653454 -82422718 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 902 966 237 65 69 chr9 41654830 41655049 -82421123 + B4 SINE B4 2 223 -69 2 902 666 0 0 0 chr9 41655049 41655123 -82421049 + (GGGA)n Simple_repeat Simple_repeat 4 77 0 2 902 966 237 65 69 chr9 41655123 41655179 -82420993 + B4 SINE B4 224 276 -16 2 902 321 26 0 0 chr9 41655189 41655227 -82420945 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 902 306 272 140 17 chr9 41655460 41655633 -82420539 - MLT1E1 LTR MaLR -441 183 1 2 902 454 306 69 25 chr9 41655728 41656003 -82420169 + L2 LINE L2 2362 2648 -771 2 902 2814 142 107 105 chr9 41656171 41656573 -82419599 + MT2B LTR ERVL 1 349 -252 2 902 237 33 0 0 chr9 41656573 41656603 -82419569 + (TCC)n Simple_repeat Simple_repeat 2 31 0 2 902 2814 142 107 105 chr9 41656603 41656800 -82419372 + MT2B LTR ERVL 350 601 0 2 902 1363 143 37 5 chr9 41656856 41657074 -82419098 - URR1B DNA MER1_type 0 225 1 2 902 482 322 59 21 chr9 41658390 41658628 -82417544 - L1ME3 LINE L1 -10 6152 5906 2 902 186 43 0 0 chr9 41658667 41658690 -82417482 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 902 458 342 36 42 chr9 41658763 41658937 -82417235 + B3A SINE B2 2 176 -22 2 902 369 0 0 0 chr9 41658937 41658978 -82417194 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 902 458 342 36 42 chr9 41658978 41658995 -82417177 + B3A SINE B2 177 192 -6 2 902 336 335 109 6 chr9 41659104 41659287 -82416885 + LTR33 LTR ERVL 4 205 -310 2 902 346 255 23 90 chr9 41659362 41659439 -82416733 + LTR33 LTR ERVL 333 404 -111 2 902 1529 225 24 112 chr9 41659439 41659849 -82416323 + ORR1D1 LTR MaLR 1 374 0 2 902 346 255 23 90 chr9 41659849 41659948 -82416224 + LTR33 LTR ERVL 405 497 -18 2 902 720 226 121 55 chr9 41660696 41660968 -82415204 + ORR1E LTR MaLR 6 295 -64 2 902 196 263 13 38 chr9 41661717 41661796 -82414376 - L2 LINE L2 -541 2878 2802 2 902 282 247 12 49 chr9 41661894 41661975 -82414197 + B4A SINE B4 10 87 -205 2 902 198 208 0 0 chr9 41661975 41662023 -82414149 + A-rich Low_complexity Low_complexity 1 48 0 2 902 325 355 71 16 chr9 41662025 41662208 -82413964 + B4A SINE B4 82 274 -18 2 902 501 17 0 0 chr9 41662259 41662317 -82413855 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 902 225 0 0 0 chr9 41662317 41662341 -82413831 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 902 289 347 150 15 chr9 41662353 41662619 -82413553 - L2 LINE L2 -703 2716 2415 2 902 585 269 0 14 chr9 41662998 41663145 -82413027 + B4 SINE B4 3 147 -145 2 902 287 321 0 0 chr9 41663146 41663227 -82412945 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 902 594 103 0 0 chr9 41663255 41663342 -82412830 + (GGGA)n Simple_repeat Simple_repeat 2 88 0 2 902 672 48 0 0 chr9 41664070 41664154 -82412018 + (TGGA)n Simple_repeat Simple_repeat 3 86 0 2 902 830 294 89 0 chr9 41664198 41664433 -82411739 + MTD LTR MaLR 50 305 -114 2 902 492 223 37 37 chr9 41664745 41664880 -82411292 - ORR1D2 LTR MaLR -233 137 3 2 902 856 132 7 7 chr9 41666225 41666378 -82409794 + (GA)n Simple_repeat Simple_repeat 2 154 0 2 902 222 118 0 0 chr9 41666457 41666491 -82409681 + (A)n Simple_repeat Simple_repeat 1 34 0 2 902 225 0 0 0 chr9 41667614 41667639 -82408533 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 902 224 309 0 23 chr9 41667647 41667733 -82408439 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 2 902 385 308 102 6 chr9 41670111 41670268 -82405904 + MIR3 SINE MIR 37 208 0 2 902 265 285 117 35 chr9 41670631 41670802 -82405370 - Tigger14a DNA MER2_type 0 324 140 2 902 192 341 167 24 chr9 41671379 41671505 -82404667 + MIRm SINE MIR 133 276 0 2 902 362 262 8 0 chr9 41671600 41671722 -82404450 + (TG)n Simple_repeat Simple_repeat 2 124 0 2 902 716 335 26 72 chr9 41671725 41672031 -82404141 - B4A SINE B4 0 292 1 2 902 1146 339 117 52 chr9 41672415 41673532 -82402640 - L2 LINE L2 -388 3031 1842 2 902 954 310 37 15 chr9 41673844 41674116 -82402056 + B4A SINE B4 9 286 -6 2 902 398 345 10 77 chr9 41674709 41674916 -82401256 + MER20 DNA MER1_type 2 194 -25 2 902 342 0 0 0 chr9 41676997 41677035 -82399137 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 902 746 83 242 0 chr9 41677035 41677155 -82399017 - B2_Mm1a SINE B2 -44 149 1 2 902 271 299 15 0 chr9 41677368 41677435 -82398737 + MIRm SINE MIR 106 173 -103 2 902 396 0 0 0 chr9 41678320 41678364 -82397808 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 902 450 0 0 0 chr9 41678364 41678414 -82397758 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 902 446 75 0 15 chr9 41678706 41678774 -82397398 + (TCC)n Simple_repeat Simple_repeat 2 68 0 2 902 237 323 113 24 chr9 41679849 41680017 -82396155 - RMER15 LTR ERVL -390 185 3 2 902 507 267 56 10 chr9 41680134 41680353 -82395819 - L1M5 LINE L1 -631 5543 5315 2 902 28 48 0 0 chr9 41680366 41680408 -82395764 + AT_rich Low_complexity Low_complexity 1 42 0 2 903 480 192 2 0 chr9 41681370 41681460 -82394712 + B1_Mur4 SINE Alu 51 142 -8 2 903 265 286 62 27 chr9 41681464 41681639 -82394533 + L1MC3 LINE L1 5600 5781 -403 2 903 240 196 65 6 chr9 41681693 41681768 -82394404 + L1MC3 LINE L1 5864 5940 -239 2 903 293 264 110 76 chr9 41682138 41682376 -82393796 + L1M5 LINE L1 5277 5521 -719 2 903 882 298 9 0 chr9 41683613 41683828 -82392344 + ID_B1 SINE B4 2 218 -6 2 903 807 251 97 77 chr9 41684097 41684447 -82391725 - ORR1E LTR MaLR -2 357 1 2 903 378 42 0 0 chr9 41684488 41684536 -82391636 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 903 542 114 11 0 chr9 41684624 41684712 -82391460 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 903 197 299 109 20 chr9 41685787 41685919 -82390253 + MIRc SINE MIR 113 252 -16 2 903 818 70 0 9 chr9 41686161 41686276 -82389896 + (TTCTC)n Simple_repeat Simple_repeat 2 115 0 2 903 568 134 17 28 chr9 41686290 41686467 -82389705 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 2 903 773 320 45 57 chr9 41686526 41686558 -82389614 - B4A SINE B4 -30 262 223 2 903 468 0 0 0 chr9 41686558 41686610 -82389562 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 2 903 773 320 45 57 chr9 41686610 41686842 -82389330 - B4A SINE B4 -70 222 1 2 903 508 277 0 15 chr9 41686868 41687000 -82389172 - ID_B1 SINE B4 -7 217 88 2 903 689 277 41 27 chr9 41687408 41687627 -82388545 + L1MD1 LINE L1 189 410 -6223 2 903 456 19 0 0 chr9 41687674 41687727 -82388445 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 903 264 250 0 0 chr9 41687746 41687798 -82388374 - ID4 SINE ID -31 52 1 3 903 255 341 91 0 chr9 41687798 41687886 -82388286 + L1MD1 LINE L1 444 539 -6094 2 903 232 214 54 0 chr9 41688117 41688173 -82387999 + L1M4 LINE L1 5829 5887 -287 3 903 1216 312 68 66 chr9 41688422 41689131 -82387041 + L1MD1 LINE L1 1325 2063 -4570 2 903 232 27 0 51 chr9 41689131 41689170 -82387002 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 903 1216 312 68 66 chr9 41689170 41689481 -82386691 + L1MD1 LINE L1 2064 2384 -4249 2 903 414 294 105 22 chr9 41689481 41689662 -82386510 + B3A SINE B2 3 198 0 3 903 1216 312 68 66 chr9 41689662 41689947 -82386225 + L1MD1 LINE L1 2385 2634 -3999 2 903 574 312 73 72 chr9 41689968 41690569 -82385603 + L1MD1 LINE L1 4643 5244 -1293 2 903 210 71 0 0 chr9 41690615 41690643 -82385529 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 903 291 306 17 61 chr9 41690648 41690667 -82385505 - B4A SINE B4 -181 111 2 3 903 555 167 10 0 chr9 41690667 41690763 -82385409 - B3 SINE B2 -118 98 2 3 903 264 322 0 25 chr9 41690838 41690956 -82385216 + GA-rich Low_complexity Low_complexity 1 115 0 3 903 229 264 56 0 chr9 41691122 41691194 -82384978 + GA-rich Low_complexity Low_complexity 1 76 0 3 903 255 125 0 0 chr9 41691195 41691235 -82384937 + (GGGGA)n Simple_repeat Simple_repeat 4 43 0 3 903 850 301 129 13 chr9 41691253 41692094 -82384078 + L1MD1 LINE L1 5444 6387 -246 2 903 380 364 80 36 chr9 41693357 41693659 -82382513 + L1MB7 LINE L1 5693 6007 -177 3 903 375 245 19 10 chr9 41693820 41693923 -82382249 + ORR1E LTR MaLR 32 135 -224 3 903 254 236 40 27 chr9 41694070 41694144 -82382028 + L1MB7 LINE L1 6052 6126 -38 3 903 988 186 34 107 chr9 41694491 41694819 -82381353 - RLTRETN_Mm LTR ERVK 0 409 1 3 903 254 307 0 54 chr9 41695350 41695443 -82380729 - MLT1A1 LTR MaLR 0 408 321 3 903 993 151 0 82 chr9 41695729 41695924 -82380248 + ORR1D1 LTR MaLR 3 181 -193 3 903 294 185 0 0 chr9 41695940 41696021 -82380151 + CT-rich Low_complexity Low_complexity 2 82 0 3 903 180 97 0 0 chr9 41696020 41696051 -82380121 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 903 287 189 53 92 chr9 41696070 41696146 -82380026 + ORR1D1 LTR MaLR 158 230 -144 3 903 1863 174 119 11 chr9 41696232 41696609 -82379563 + MTD LTR MaLR 2 419 0 3 903 597 14 0 0 chr9 41697278 41697348 -82378824 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 903 625 266 90 19 chr9 41697623 41697692 -82378480 - B4A SINE B4 -5 287 218 3 903 351 0 0 0 chr9 41697692 41697731 -82378441 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 903 625 266 90 19 chr9 41697731 41697929 -82378243 - B4A SINE B4 -75 217 1 3 903 180 0 0 0 chr9 41699380 41699400 -82376772 + (A)n Simple_repeat Simple_repeat 1 20 0 3 903 219 36 0 0 chr9 41700081 41700109 -82376063 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 3 903 391 209 65 19 chr9 41700276 41700383 -82375789 - PB1D10 SINE Alu -1 116 5 3 903 300 158 0 0 chr9 41700780 41700837 -82375335 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 903 310 311 149 33 chr9 41700939 41701206 -82374966 - L2a LINE L2 -284 3142 2848 3 903 269 277 15 0 chr9 41701256 41701321 -82374851 - tRNA-Ala-GCA tRNA tRNA -7 68 3 3 903 423 194 0 0 chr9 41701780 41701873 -82374299 + CT-rich Low_complexity Low_complexity 1 93 0 3 903 239 221 42 42 chr9 41701886 41701957 -82374215 + ORR1D2 LTR MaLR 3 73 -297 3 903 245 344 65 0 chr9 41704045 41704138 -82372034 - MLT1H1 LTR MaLR -22 533 435 3 903 423 0 0 0 chr9 41704201 41704248 -82371924 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 903 351 235 0 0 chr9 41704249 41704415 -82371757 + CT-rich Low_complexity Low_complexity 1 166 0 3 903 356 342 111 30 chr9 41704485 41704684 -82371488 - MLT1H1 LTR MaLR -297 258 44 3 903 347 268 123 78 chr9 41705237 41705437 -82370735 - B4 SINE B4 -10 282 74 3 903 26 64 0 0 chr9 41705587 41705634 -82370538 + AT_rich Low_complexity Low_complexity 1 47 0 3 903 221 98 24 0 chr9 41705640 41705681 -82370491 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 903 480 18 0 0 chr9 41705840 41705897 -82370275 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 903 189 0 0 0 chr9 41707219 41707240 -82368932 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 903 317 268 125 8 chr9 41707771 41707899 -82368273 - MIRc SINE MIR 0 268 126 3 903 186 43 0 0 chr9 41707899 41707922 -82368250 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 903 264 271 139 73 chr9 41709349 41709415 -82366757 - MLT1A1 LTR MaLR 0 408 344 3 903 282 29 0 0 chr9 41709415 41709450 -82366722 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 903 264 271 139 73 chr9 41709450 41709534 -82366638 - MLT1A1 LTR MaLR -65 343 248 3 903 325 16 63 16 chr9 41710563 41710626 -82365546 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 3 903 453 295 18 0 chr9 41710944 41711056 -82365116 + RSINE1 SINE B4 2 115 -50 3 903 312 91 0 0 chr9 41711059 41711103 -82365069 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 903 249 83 0 0 chr9 41711105 41711141 -82365031 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 903 739 268 103 0 chr9 41711739 41711933 -82364239 + B3 SINE B2 2 215 -1 3 903 7471 15 1 0 chr9 41712389 41713210 -82362962 - RLTR13B2 LTR ERVK 0 822 1 3 903 190 289 51 26 chr9 41713437 41713515 -82362657 + MIR SINE MIR 51 130 -78 3 903 2049 66 20 24 chr9 41713567 41713860 -82362312 - RLTR4_Mm LTR ERV1 0 742 451 3 903 1490 107 42 12 chr9 41713837 41714141 -82362031 - RLTR4_Mm LTR ERV1 -468 274 1 3 903 48666 42 0 0 chr9 41714143 41719774 -82356398 - MuLV-int LTR ERV1 0 7606 1976 3 903 2049 66 20 24 chr9 41719777 41720070 -82356102 - RLTR4_Mm LTR ERV1 0 742 451 3 903 1490 107 42 12 chr9 41720047 41720351 -82355821 - RLTR4_Mm LTR ERV1 -468 274 1 3 903 405 0 0 0 chr9 41721125 41721170 -82355002 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 903 672 304 45 42 chr9 41721220 41721484 -82354688 - B4A SINE B4 -26 266 2 3 903 377 299 21 43 chr9 41721746 41721886 -82354286 + ORR1E LTR MaLR 3 139 -220 3 903 715 211 77 43 chr9 41722810 41723018 -82353154 + B3 SINE B2 2 216 0 3 903 983 250 55 45 chr9 41724406 41724665 -82351507 + B4A SINE B4 1 269 -23 3 903 588 14 0 0 chr9 41724665 41724734 -82351438 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 903 983 250 55 45 chr9 41724734 41724763 -82351409 + B4A SINE B4 270 292 0 3 903 304 286 142 7 chr9 41724848 41724984 -82351188 + MIRb SINE MIR 5 153 -123 3 903 213 374 27 86 chr9 41725206 41725393 -82350779 - MIR SINE MIR -76 186 11 3 903 477 50 0 0 chr9 41725715 41725775 -82350397 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 903 335 249 46 34 chr9 41725952 41726127 -82350045 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 903 489 76 0 0 chr9 41726140 41726206 -82349966 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 903 387 127 0 0 chr9 41726259 41726322 -82349850 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 903 180 0 0 0 chr9 41726323 41726343 -82349829 + (CAGAA)n Simple_repeat Simple_repeat 1 20 0 3 903 204 266 0 45 chr9 41726387 41726454 -82349718 + L3 LINE CR1 733 796 -3693 3 903 416 0 30 30 chr9 41726657 41726723 -82349449 + (GTGTG)n Simple_repeat Simple_repeat 1 66 0 3 903 500 301 43 5 chr9 41728340 41728547 -82347625 + Charlie4a DNA MER1_type 204 418 -90 3 903 228 135 0 0 chr9 41728548 41728585 -82347587 + (GGGAGA)n Simple_repeat Simple_repeat 5 41 0 3 903 947 162 164 20 chr9 41728642 41728837 -82347335 + URR1B DNA MER1_type 2 224 -1 3 903 2850 130 17 157 chr9 41729123 41729771 -82346401 + RLTR31B_Mm LTR ERVK 1 557 0 3 903 315 0 0 0 chr9 41730236 41730271 -82345901 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 903 22 0 0 0 chr9 41730335 41730357 -82345815 + AT_rich Low_complexity Low_complexity 1 22 0 3 903 522 0 0 0 chr9 41731000 41731058 -82345114 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 903 324 233 14 14 chr9 41731815 41731889 -82344283 + MTE2a LTR MaLR 20 93 -286 3 903 282 279 127 46 chr9 41731965 41732138 -82344034 - MER33 DNA MER1_type -123 201 15 3 903 1075 93 6 25 chr9 41732590 41732963 -82343209 + (TTTC)n Simple_repeat Simple_repeat 1 365 0 3 903 526 136 19 10 chr9 41732963 41733067 -82343105 + CT-rich Low_complexity Low_complexity 1 105 0 3 903 1109 123 6 0 chr9 41733067 41733246 -82342926 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 903 191 121 0 29 chr9 41734596 41734630 -82341542 + MIRc SINE MIR 116 148 -120 3 903 982 215 94 0 chr9 41735036 41735259 -82340913 - MTEa LTR MaLR -6 373 130 3 903 822 185 0 7 chr9 41735483 41735630 -82340542 + B1_Mus1 SINE Alu 2 147 -1 3 903 333 268 0 11 chr9 41735766 41735853 -82340319 + BC1_Mm scRNA scRNA 5 90 -62 3 903 2372 151 188 8 chr9 41736748 41736777 -82339395 - RMER4B LTR ERVK 0 585 553 3 903 423 0 0 0 chr9 41736777 41736824 -82339348 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 903 2372 151 188 8 chr9 41736824 41737289 -82338883 - RMER4B LTR ERVK -33 552 3 3 903 234 364 86 39 chr9 41737667 41737901 -82338271 + L3 LINE CR1 3109 3353 -1136 3 903 1442 236 78 45 chr9 41738352 41738778 -82337394 - RCHARR1 DNA MER1_type 0 974 535 3 903 418 355 178 14 chr9 41738779 41739065 -82337107 + L1ME1 LINE L1 3563 3895 -2251 3 903 281 316 69 84 chr9 41739196 41739428 -82336744 + L1ME1 LINE L1 4406 4641 -1505 3 903 834 191 102 15 chr9 41739428 41739454 -82336718 - B3 SINE B2 -2 214 175 3 903 450 0 0 0 chr9 41739454 41739504 -82336668 + (TATG)n Simple_repeat Simple_repeat 4 53 0 3 903 834 191 102 15 chr9 41739504 41739674 -82336498 - B3 SINE B2 -42 174 2 3 903 281 316 69 84 chr9 41739674 41739832 -82336340 + L1ME1 LINE L1 4642 4790 -1356 3 903 219 36 0 0 chr9 41739970 41739998 -82336174 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 3 903 310 307 82 104 chr9 41740129 41740311 -82335861 + L1ME1 LINE L1 5121 5298 -848 3 903 280 252 93 0 chr9 41740364 41740471 -82335701 + L1ME1 LINE L1 5339 5455 -724 3 903 363 319 77 38 chr9 41740755 41741016 -82335156 + L1ME1 LINE L1 5854 6124 -55 3 903 426 108 0 0 chr9 41741021 41741086 -82335086 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 903 836 295 7 85 chr9 41741089 41741139 -82335033 - B4A SINE B4 -18 274 231 3 903 956 162 0 0 chr9 41741139 41741287 -82334885 - B1_Mur3 SINE Alu -1 148 1 3 903 836 295 7 85 chr9 41741287 41741529 -82334643 - B4A SINE B4 -62 230 5 3 903 528 16 0 0 chr9 41742572 41742633 -82333539 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 903 441 54 0 0 chr9 41744634 41744690 -82331482 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 903 979 8 8 8 chr9 41744998 41745055 -82331117 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 903 1305 83 0 0 chr9 41745055 41745235 -82330937 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 3 903 979 5 5 5 chr9 41745235 41745334 -82330838 + (GA)n Simple_repeat Simple_repeat 1 99 0 3 903 773 273 14 14 chr9 41747143 41747351 -82328821 + ID_B1 SINE B4 9 216 -8 3 903 180 0 0 0 chr9 41747505 41747525 -82328647 + (A)n Simple_repeat Simple_repeat 1 20 0 3 903 225 0 0 0 chr9 41747945 41747970 -82328202 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 903 239 79 0 26 chr9 41748265 41748304 -82327868 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 3 903 22 0 0 0 chr9 41749787 41749809 -82326363 + AT_rich Low_complexity Low_complexity 1 22 0 4 903 334 302 0 34 chr9 41749809 41749898 -82326274 - B4 SINE B4 -79 213 128 4 903 483 63 0 0 chr9 41751747 41751810 -82324362 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 903 259 259 135 15 chr9 41752035 41752168 -82324004 + L2 LINE L2 2297 2445 -974 4 903 306 318 11 11 chr9 41752682 41752771 -82323401 - MIRm SINE MIR -1 275 187 4 903 471 213 43 16 chr9 41754277 41754377 -82321795 - MTD LTR MaLR 0 419 268 4 903 3566 166 23 43 chr9 41754377 41755082 -82321090 - MTC-int LTR MaLR 0 1258 568 4 903 188 103 51 0 chr9 41755157 41755196 -82320976 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 903 579 94 0 0 chr9 41755686 41755782 -82320390 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 903 294 50 0 0 chr9 41756876 41756916 -82319256 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 903 214 156 0 0 chr9 41756918 41756950 -82319222 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 4 903 1154 90 11 0 chr9 41756950 41757127 -82319045 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 4 903 180 0 0 0 chr9 41757127 41757147 -82319025 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 4 903 325 54 36 0 chr9 41761332 41761388 -82314784 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 4 903 276 242 0 0 chr9 41762713 41762808 -82313364 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 903 782 301 99 21 chr9 41762931 41763095 -82313077 + MLT1A0 LTR MaLR 1 172 -193 4 903 198 0 0 0 chr9 41763095 41763117 -82313055 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 903 782 301 99 21 chr9 41763117 41763285 -82312887 + MLT1A0 LTR MaLR 173 358 -7 4 903 186 281 162 26 chr9 41764289 41764406 -82311766 + L2c LINE L2 3254 3386 -1 4 903 446 129 0 12 chr9 41764615 41764701 -82311471 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 903 693 268 106 51 chr9 41764753 41765028 -82311144 - B4A SINE B4 -1 291 2 4 903 189 0 0 0 chr9 41766005 41766026 -82310146 + (T)n Simple_repeat Simple_repeat 1 21 0 4 903 288 208 125 0 chr9 41766512 41766608 -82309564 + Lx9 LINE L1 7528 7635 -9 4 903 257 235 98 19 chr9 41766812 41766917 -82309255 + MTEb LTR MaLR 257 378 -1 4 903 343 274 0 0 chr9 41767240 41767313 -82308859 + ID4_ SINE ID 2 74 -9 4 903 189 297 53 26 chr9 41767832 41767908 -82308264 + L2b LINE L2 3273 3350 -25 4 903 273 254 133 17 chr9 41768916 41769036 -82307136 + L1ME4a LINE L1 5980 6113 -11 4 903 214 296 119 46 chr9 41769160 41769351 -82306821 + MIR SINE MIR 40 249 -19 4 903 949 145 7 0 chr9 41770451 41770596 -82305576 + B1_Mus2 SINE Alu 1 146 -1 4 903 935 162 101 18 chr9 41770877 41771070 -82305102 + B3 SINE B2 3 183 -12 4 903 290 362 145 55 chr9 41771325 41771967 -82304205 + MamRep605 Unknown Unknown 68 767 -109 4 903 2205 146 34 16 chr9 41771973 41772356 -82303816 + ORR1B1 LTR MaLR 5 394 0 4 903 180 77 0 0 chr9 41778036 41778062 -82298110 + (A)n Simple_repeat Simple_repeat 1 26 0 4 903 2830 71 0 0 chr9 41779210 41779588 -82296584 - L1_Mm LINE L1 -1112 4771 4394 4 903 4922 42 2 2 chr9 41779585 41780207 -82295965 + L1Md_F2 LINE L1 4965 5586 -297 4 903 8072 48 10 3 chr9 41780207 41781182 -82294990 + L1Md_F2 LINE L1 5587 6568 -14 4 903 1213 240 49 77 chr9 41781428 41781816 -82294356 + MTEa LTR MaLR 3 379 0 4 903 235 302 86 8 chr9 41783396 41783513 -82292659 - L1M5 LINE L1 -462 5662 5537 4 903 257 257 38 75 chr9 41785128 41785208 -82290964 + ID2 SINE ID 1 77 -6 4 903 182 107 53 18 chr9 41785283 41785340 -82290832 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 903 399 321 141 25 chr9 41785739 41785799 -82290373 - MER2 DNA MER2_type -123 222 163 4 903 1611 161 191 6 chr9 41785799 41786123 -82290049 - ORR1C2 LTR MaLR 0 384 1 4 903 399 321 141 25 chr9 41786123 41786260 -82289912 - MER2 DNA MER2_type -183 162 2 4 903 184 244 24 24 chr9 41786369 41786453 -82289719 + A-rich Low_complexity Low_complexity 5 88 0 4 903 582 361 27 14 chr9 41786866 41787085 -82289087 - MER58A DNA MER1_type 0 224 3 4 903 495 118 0 0 chr9 41787320 41787396 -82288776 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 903 573 15 0 0 chr9 41787736 41787802 -82288370 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 903 233 245 41 41 chr9 41787941 41788039 -82288133 - L1M5 LINE L1 -319 5805 5708 4 903 1478 204 151 19 chr9 41788044 41788414 -82287758 + MTD LTR MaLR 1 419 0 4 903 342 324 20 60 chr9 41789382 41789533 -82286639 + MLT1J LTR MaLR 149 293 -219 4 903 260 291 44 26 chr9 41791500 41791613 -82284559 + Lx8 LINE L1 7209 7323 -150 4 903 458 254 29 17 chr9 41791615 41791727 -82284445 + B1F SINE Alu 23 128 -19 4 903 365 258 9 21 chr9 41791729 41791840 -82284332 + ID4_ SINE ID 2 109 -43 4 903 234 209 95 95 chr9 41795013 41795108 -82281064 + MIRb SINE MIR 16 110 -158 4 903 879 166 0 0 chr9 41795888 41796301 -82279871 + (TG)n Simple_repeat Simple_repeat 1 413 0 4 903 1206 261 97 6 chr9 41796990 41797329 -82278843 + MTE2b LTR MaLR 8 377 -2 4 903 744 43 0 0 chr9 41797598 41797690 -82278482 + (GA)n Simple_repeat Simple_repeat 1 92 0 4 903 1128 282 113 30 chr9 41797752 41798355 -82277817 + L1MA5 LINE L1 5373 6025 -275 4 903 436 285 230 30 chr9 41798847 41799082 -82277090 + B4A SINE B4 1 282 -10 4 903 343 278 120 0 chr9 41799166 41799274 -82276898 + PB1 SINE Alu 5 125 -2 4 903 321 267 13 0 chr9 41799282 41799357 -82276815 + ID4_ SINE ID 2 77 -6 4 903 548 219 35 0 chr9 41800762 41800876 -82275296 - ID_B1 SINE B4 -8 216 99 4 903 280 299 9 27 chr9 41800960 41801070 -82275102 + MLT1E2 LTR MaLR 139 246 -381 4 903 801 155 299 0 chr9 41801378 41801552 -82274620 - URR1A DNA MER1_type 0 226 1 4 903 774 0 0 0 chr9 41801842 41801928 -82274244 + (TC)n Simple_repeat Simple_repeat 1 86 0 4 903 407 332 124 28 chr9 41801932 41802214 -82273958 - MER2 DNA MER2_type -29 316 8 4 903 538 51 13 13 chr9 41802248 41802327 -82273845 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 903 929 307 28 21 chr9 41802358 41802641 -82273531 - B4A SINE B4 0 292 8 4 903 792 246 0 0 chr9 41805091 41805528 -82270644 + (CA)n Simple_repeat Simple_repeat 1 437 0 4 903 289 247 85 12 chr9 41805584 41805666 -82270506 + B4A SINE B4 1 88 -204 4 903 307 293 28 75 chr9 41805670 41805777 -82270395 + B4A SINE B4 191 292 0 4 903 188 35 35 0 chr9 41806056 41806085 -82270087 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 4 903 488 254 73 8 chr9 41806114 41806237 -82269935 + B1F2 SINE Alu 4 134 -15 4 903 285 0 67 0 chr9 41806239 41806284 -82269888 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 4 903 255 358 107 0 chr9 41806409 41806764 -82269408 + HAL1 LINE L1 1360 1752 -755 4 903 234 239 44 15 chr9 41806912 41806980 -82269192 + B1F SINE Alu 78 147 -2 4 903 349 264 0 58 chr9 41806985 41807122 -82269050 + GA-rich Low_complexity Low_complexity 4 132 0 4 903 273 277 402 54 chr9 41807146 41807350 -82268822 + B4 SINE B4 2 276 -16 4 903 546 67 0 0 chr9 41807367 41807442 -82268730 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 903 871 261 12 70 chr9 41809129 41809385 -82266787 + B4 SINE B4 50 290 -2 4 903 912 289 68 17 chr9 41810045 41810400 -82265772 + MTEb LTR MaLR 3 375 -4 4 903 441 265 67 17 chr9 41810967 41811086 -82265086 + MLT1B LTR MaLR 46 170 -220 4 903 316 219 0 45 chr9 41811092 41811159 -82265013 + PB1 SINE Alu 64 127 0 4 903 340 308 66 8 chr9 41811157 41811278 -82264894 + MLT1B LTR MaLR 161 288 -102 4 903 589 269 51 49 chr9 41811363 41811715 -82264457 + ORR1E LTR MaLR 1 338 -21 4 904 265 345 87 55 chr9 41812554 41812731 -82263441 + MLT1B LTR MaLR 3 187 -203 4 904 1189 91 91 0 chr9 41812731 41812907 -82263265 + B2_Mm2 SINE B2 1 192 -3 4 904 265 345 87 55 chr9 41812907 41812947 -82263225 + MLT1B LTR MaLR 188 227 -163 4 904 252 0 0 0 chr9 41813033 41813061 -82263111 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 904 186 43 0 0 chr9 41813061 41813083 -82263089 + (CG)n Simple_repeat Simple_repeat 1 23 0 4 904 335 301 48 124 chr9 41813387 41813573 -82262599 + MER5B DNA MER1_type 7 178 0 4 904 180 0 0 0 chr9 41814347 41814367 -82261805 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 4 904 357 24 0 0 chr9 41816119 41816161 -82260011 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 904 225 200 13 133 chr9 41816865 41816940 -82259232 - LTR50 LTR ERVL -552 243 178 4 904 1131 194 32 9 chr9 41817261 41817480 -82258692 - URR1A DNA MER1_type 0 226 3 4 904 716 189 28 14 chr9 41817555 41817700 -82258472 - B1_Mur2 SINE Alu -1 148 2 4 904 318 284 86 21 chr9 41817912 41818099 -82258073 - MER44B DNA MER2_type 0 550 352 4 904 25 0 0 0 chr9 41818102 41818127 -82258045 + AT_rich Low_complexity Low_complexity 1 25 0 4 904 340 310 8 34 chr9 41818179 41818296 -82257876 - MER44B DNA MER2_type -433 117 4 4 904 495 0 0 0 chr9 41819195 41819250 -82256922 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 904 31 82 0 0 chr9 41819573 41819646 -82256526 + AT_rich Low_complexity Low_complexity 1 73 0 4 904 238 258 0 0 chr9 41819665 41819727 -82256445 + L1MEd LINE L1 975 1036 -5083 4 904 594 260 12 62 chr9 41820281 41820441 -82255731 + RSINE1 SINE B4 11 162 -3 4 904 749 134 38 0 chr9 41820441 41820652 -82255520 + (TAGA)n Simple_repeat Simple_repeat 1 219 0 4 904 191 61 30 0 chr9 41820679 41820712 -82255460 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 4 904 323 268 14 0 chr9 41820715 41820786 -82255386 - ID4 SINE ID -10 73 2 4 904 562 228 28 35 chr9 41822110 41822251 -82253921 + B3 SINE B2 77 216 0 4 904 592 315 114 15 chr9 41823337 41823622 -82252550 + MLT1A0 LTR MaLR 50 365 0 5 904 242 333 11 67 chr9 41823671 41823753 -82252419 + RSINE1 SINE B4 2 78 -87 5 904 1542 156 138 0 chr9 41823753 41824035 -82252137 + ORR1A4 LTR MaLR 1 321 -8 5 904 288 218 134 49 chr9 41824030 41824112 -82252060 + RSINE1 SINE B4 68 156 -9 5 904 270 0 0 0 chr9 41824116 41824146 -82252026 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 904 229 317 85 0 chr9 41825352 41825434 -82250738 + B4A SINE B4 86 174 -118 5 904 210 211 39 0 chr9 41825415 41825467 -82250705 + B1_Mur1 SINE Alu 96 149 0 5 904 448 250 100 29 chr9 41825578 41825681 -82250491 + RSINE1 SINE B4 12 124 -41 5 904 330 80 0 0 chr9 41825681 41825731 -82250441 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 904 448 250 100 29 chr9 41825731 41825767 -82250405 + RSINE1 SINE B4 125 160 -5 5 904 1596 248 38 22 chr9 41828293 41828710 -82247462 + Lx6 LINE L1 7010 7433 -27 5 904 226 290 0 102 chr9 41829285 41829481 -82246691 + C-rich Low_complexity Low_complexity 1 176 0 5 904 453 353 146 15 chr9 41830956 41831231 -82244941 + MER2 DNA MER2_type 3 313 -32 5 904 24 32 0 0 chr9 41831293 41831324 -82244848 + AT_rich Low_complexity Low_complexity 1 31 0 5 904 279 0 0 0 chr9 41831343 41831374 -82244798 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 5 904 854 229 24 6 chr9 41832775 41832942 -82243230 + B3 SINE B2 1 170 -46 5 904 1243 48 0 0 chr9 41832957 41833104 -82243068 - B1_Mus2 SINE Alu 0 147 1 5 904 1765 169 61 35 chr9 41833398 41833826 -82242346 + RMER10A LTR ERVL 1 439 -3 5 904 932 237 147 47 chr9 41834450 41834791 -82241381 - MTE2b LTR MaLR -4 375 1 5 904 262 247 0 30 chr9 41834916 41835016 -82241156 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 5 904 365 312 0 0 chr9 41838085 41838197 -82237975 + PB1D10 SINE Alu 1 112 -5 5 904 631 206 65 22 chr9 41838249 41838388 -82237784 + B1F SINE Alu 4 148 -1 5 904 999 207 190 0 chr9 41840378 41840487 -82235685 + MTD LTR MaLR 1 113 -306 5 904 441 0 0 0 chr9 41840487 41840536 -82235636 + (TTG)n Simple_repeat Simple_repeat 1 49 0 5 904 999 207 190 0 chr9 41840536 41840668 -82235504 + MTD LTR MaLR 114 287 -132 5 904 433 285 168 20 chr9 41842053 41842208 -82233964 - MER2 DNA MER2_type -94 251 74 5 904 180 0 0 0 chr9 41842208 41842228 -82233944 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 904 433 285 168 20 chr9 41842228 41842269 -82233903 - MER2 DNA MER2_type -272 73 26 5 904 604 214 63 14 chr9 41842497 41842639 -82233533 - B1F1 SINE Alu 0 149 1 5 904 757 207 62 33 chr9 41844215 41844425 -82231747 + B3 SINE B2 1 216 0 5 904 212 264 0 0 chr9 41844523 41844576 -82231596 + (TATG)n Simple_repeat Simple_repeat 4 56 0 5 904 225 287 56 56 chr9 41845877 41845984 -82230188 - MIR SINE MIR -139 123 17 5 904 424 320 53 7 chr9 41846180 41846331 -82229841 + MER21B LTR ERV1 329 486 -377 5 904 211 140 0 23 chr9 41846565 41846609 -82229563 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 904 691 236 0 8 chr9 41846687 41846815 -82229357 + RSINE1 SINE B4 3 129 -36 5 904 301 116 23 0 chr9 41848196 41848239 -82227933 - HAL1-3A_ME LINE L1 -842 2016 1973 5 904 228 202 36 27 chr9 41848259 41848371 -82227801 + (TATATG)n Simple_repeat Simple_repeat 6 118 0 5 904 191 129 13 67 chr9 41848369 41848444 -82227728 + (GTGTG)n Simple_repeat Simple_repeat 5 75 0 5 904 220 170 43 0 chr9 41848455 41848502 -82227670 + (TATG)n Simple_repeat Simple_repeat 2 50 0 5 904 559 220 29 0 chr9 41848505 41848678 -82227494 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 904 228 148 32 16 chr9 41848696 41848758 -82227414 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 5 904 759 283 68 0 chr9 41850062 41850267 -82225905 + ID_B1 SINE B4 1 219 -5 5 904 249 303 127 79 chr9 41850782 41850947 -82225225 + MER58A DNA MER1_type 27 199 -25 5 904 354 45 0 0 chr9 41852498 41852542 -82223630 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 904 201 74 0 0 chr9 41852583 41852610 -82223562 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 904 189 171 0 0 chr9 41852709 41852744 -82223428 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 904 498 295 19 32 chr9 41852752 41852906 -82223266 - RSINE1 SINE B4 -6 159 8 5 904 198 71 0 0 chr9 41852925 41852953 -82223219 + (GCTG)n Simple_repeat Simple_repeat 3 30 0 5 904 280 298 12 23 chr9 41852960 41852982 -82223190 - PB1D10 SINE Alu -6 111 27 5 904 303 234 16 0 chr9 41852982 41853046 -82223126 - ID_B1 SINE B4 -52 172 108 5 904 510 340 120 29 chr9 41854948 41855390 -82220782 + L1MC4 LINE L1 6935 7416 -626 5 904 249 33 0 0 chr9 41855466 41855496 -82220676 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 904 267 31 0 0 chr9 41855500 41855532 -82220640 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 904 954 286 103 29 chr9 41856565 41856914 -82219258 - MTEb LTR MaLR 0 379 5 5 904 434 320 42 39 chr9 41857429 41857715 -82218457 + B4A SINE B4 2 288 -4 5 904 21 0 0 0 chr9 41857951 41857972 -82218200 + AT_rich Low_complexity Low_complexity 1 21 0 5 904 352 267 105 0 chr9 41857991 41858077 -82218095 + PB1D10 SINE Alu 2 96 -21 5 904 300 280 29 29 chr9 41857992 41858095 -82218077 + MT2B2 LTR ERVL 167 269 -315 5 904 202 269 89 13 chr9 41858341 41858420 -82217752 + L3 LINE CR1 4167 4251 -238 5 904 195 204 0 0 chr9 41858472 41858521 -82217651 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 5 904 2547 271 108 20 chr9 41858882 41859613 -82216559 + Lx8 LINE L1 6533 7326 -147 5 904 1191 97 0 0 chr9 41859613 41859789 -82216383 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 5 904 243 0 0 0 chr9 41859789 41859816 -82216356 + (CAAG)n Simple_repeat Simple_repeat 1 27 0 5 904 2547 271 108 20 chr9 41859816 41859948 -82216224 + Lx8 LINE L1 7327 7472 -1 5 904 703 245 7 0 chr9 41860252 41860399 -82215773 - B3A SINE B2 -50 148 1 5 904 191 293 35 35 chr9 41860453 41860538 -82215634 + L2c LINE L2 3082 3166 -221 5 904 231 36 0 0 chr9 41860773 41860801 -82215371 + (GGA)n Simple_repeat Simple_repeat 3 30 0 5 904 192 292 0 20 chr9 41861674 41861723 -82214449 + L2c LINE L2 3296 3343 -44 5 904 259 298 30 69 chr9 41861777 41861878 -82214294 + MIRm SINE MIR 169 265 -11 5 904 190 273 0 0 chr9 41861839 41861883 -82214289 + L2c LINE L2 3336 3379 -8 5 904 252 301 89 71 chr9 41863439 41863607 -82212565 + L2c LINE L2 3204 3374 -13 5 904 207 0 0 0 chr9 41864171 41864194 -82211978 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 904 208 306 181 0 chr9 41864247 41864319 -82211853 + MIR3 SINE MIR 100 184 -24 5 904 246 326 54 0 chr9 41864894 41864926 -82211246 + B4 SINE B4 49 85 -207 5 904 378 229 29 0 chr9 41864926 41864996 -82211176 + B1F SINE Alu 1 72 -77 5 904 1214 41 7 0 chr9 41865011 41865156 -82211016 - B1_Mus1 SINE Alu -1 147 2 5 904 285 267 26 39 chr9 41865157 41865235 -82210937 + B1F SINE Alu 57 133 -16 5 904 216 0 0 0 chr9 41865236 41865260 -82210912 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 904 227 275 13 92 chr9 41865632 41865708 -82210464 + ID4 SINE ID 14 83 0 5 904 305 280 90 15 chr9 41865821 41865955 -82210217 + L1MEf LINE L1 1119 1262 -5840 5 904 741 305 158 30 chr9 41866249 41866687 -82209485 + L1MEf LINE L1 2380 2883 -4219 5 904 246 312 0 12 chr9 41866687 41866768 -82209404 + ID4_ SINE ID 3 82 -1 5 904 741 295 106 25 chr9 41866768 41866861 -82209311 + L1MEf LINE L1 2884 2986 -4116 5 904 3277 46 5 8 chr9 41866862 41867259 -82208913 + MTA_Mm LTR MaLR 1 396 0 5 904 576 240 39 0 chr9 41867298 41867427 -82208745 + RSINE1 SINE B4 1 134 -31 5 904 303 284 70 58 chr9 41867507 41867679 -82208493 + L1MEf LINE L1 3530 3703 -3631 5 904 308 297 78 19 chr9 41867649 41867752 -82208420 + L1MEf LINE L1 4100 4208 -2798 5 904 568 310 117 33 chr9 41867765 41868272 -82207900 + L1MEf LINE L1 4308 4850 -2156 5 904 198 103 0 0 chr9 41868284 41868313 -82207859 + (CATATA)n Simple_repeat Simple_repeat 4 32 0 5 904 23 0 0 0 chr9 41868397 41868420 -82207752 + AT_rich Low_complexity Low_complexity 1 23 0 5 904 690 234 13 27 chr9 41868737 41868879 -82207293 + B1_Mur1 SINE Alu 3 143 -6 5 904 246 32 0 0 chr9 41868879 41868910 -82207262 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 904 491 298 24 140 chr9 41869023 41869115 -82207057 + ID SINE ID 9 81 -143 5 904 356 288 73 0 chr9 41869115 41869220 -82206952 + PB1D10 SINE Alu 1 117 -32 5 904 871 308 106 28 chr9 41869246 41869787 -82206385 + L1MEf LINE L1 5331 5889 -1111 5 904 315 49 0 0 chr9 41870901 41870942 -82205230 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 904 288 312 26 26 chr9 41871409 41871524 -82204648 - L2a LINE L2 -7 3419 3305 5 904 230 312 99 23 chr9 41873195 41873326 -82202846 + ORR1C2 LTR MaLR 6 146 -238 5 904 974 229 12 37 chr9 41873571 41873885 -82202287 + MTEa LTR MaLR 1 368 -11 5 904 959 91 0 39 chr9 41874202 41874384 -82201788 + (GAGAA)n Simple_repeat Simple_repeat 4 178 0 5 904 1098 0 0 0 chr9 41874397 41874519 -82201653 + (GGAAA)n Simple_repeat Simple_repeat 3 124 0 5 904 983 325 65 54 chr9 41874880 41874957 -82201215 - MER119 DNA MER1_type -46 537 455 5 904 477 0 0 0 chr9 41874957 41875010 -82201162 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 904 983 325 65 54 chr9 41875010 41875394 -82200778 - MER119 DNA MER1_type -129 454 72 5 904 389 281 89 75 chr9 41875396 41875542 -82200630 + B1F SINE Alu 1 148 -1 5 904 204 40 0 0 chr9 41875828 41875853 -82200319 + (A)n Simple_repeat Simple_repeat 1 25 0 5 904 704 251 142 27 chr9 41876141 41876434 -82199738 - L1MB5 LINE L1 -27 6147 5825 5 904 636 14 0 0 chr9 41876437 41876510 -82199662 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 904 328 301 82 20 chr9 41878491 41878637 -82197535 + L1MB5 LINE L1 5800 5954 -220 5 904 225 333 87 58 chr9 41878921 41879093 -82197079 + MER5B DNA MER1_type 1 177 -1 5 904 216 97 0 0 chr9 41880902 41880933 -82195239 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 904 578 294 232 6 chr9 41881186 41881641 -82194531 + L1_Mur3 LINE L1 5348 5869 -11 5 904 665 266 7 27 chr9 41882886 41883033 -82193139 - ID_B1 SINE B4 0 224 81 5 904 704 336 41 52 chr9 41883562 41883907 -82192265 + MTEa LTR MaLR 22 362 -17 5 904 520 161 0 0 chr9 41883926 41884007 -82192165 + PB1 SINE Alu 29 109 -18 6 904 423 0 0 0 chr9 41884019 41884066 -82192106 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 904 3309 276 35 18 chr9 41884081 41885050 -82191122 + Lx8 LINE L1 6473 7458 -15 6 904 418 343 82 29 chr9 41885268 41885547 -82190625 + L1M4 LINE L1 14 307 -6235 6 904 455 349 80 20 chr9 41885767 41886165 -82190007 + L1M4 LINE L1 496 917 -5625 6 904 662 265 202 65 chr9 41886248 41886615 -82189557 + MTD LTR MaLR 3 419 0 6 904 323 266 89 82 chr9 41886622 41886757 -82189415 + B1F1 SINE Alu 1 136 -13 6 904 264 293 0 0 chr9 41886705 41886763 -82189409 + ID4_ SINE ID 8 65 -18 6 904 361 241 56 33 chr9 41886961 41887051 -82189121 + PB1D10 SINE Alu 20 111 -6 6 904 227 233 0 0 chr9 41887161 41887204 -82188968 - ORR1D2 LTR MaLR -6 364 322 6 904 213 94 0 0 chr9 41887541 41887573 -82188599 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 6 904 325 360 0 51 chr9 41887895 41888012 -82188160 + RMER12 LTR ERVK 738 848 -474 6 904 277 346 115 18 chr9 41887930 41888095 -82188077 - RLTR22_Mur LTR ERVK -379 1469 1289 6 904 533 264 187 18 chr9 41888170 41888336 -82187836 + B3A SINE B2 1 194 -4 6 904 592 307 13 19 chr9 41888370 41888526 -82187646 + RSINE1 SINE B4 3 157 -8 6 904 471 35 0 0 chr9 41888530 41888587 -82187585 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 904 481 286 146 80 chr9 41889308 41889582 -82186590 + B4 SINE B4 1 292 0 6 904 445 205 61 107 chr9 41891540 41891671 -82184501 + B4A SINE B4 168 292 0 6 904 1041 192 49 5 chr9 41892699 41892903 -82183269 + B3 SINE B2 1 213 -3 6 904 239 209 98 11 chr9 41893318 41893410 -82182762 + L1MA6 LINE L1 5262 5361 -763 6 904 243 79 0 0 chr9 41893432 41893470 -82182702 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 6 904 240 338 14 0 chr9 41893548 41893622 -82182550 + ID_B1 SINE B4 139 213 -11 6 904 292 162 103 0 chr9 41893637 41893705 -82182467 + L1MC LINE L1 5368 5442 -2440 6 904 217 337 24 0 chr9 41893812 41893895 -82182277 - L2a LINE L2 -61 3365 3281 6 904 653 275 114 24 chr9 41894128 41894467 -82181705 + L1MA6 LINE L1 5594 5963 -337 6 904 184 239 0 0 chr9 41894807 41894853 -82181319 - L2 LINE L2 -339 3080 3035 6 904 210 266 0 59 chr9 41894916 41894984 -82181188 + B4A SINE B4 2 65 -227 6 904 425 235 12 0 chr9 41895007 41895092 -82181080 + B4A SINE B4 148 233 -59 6 904 285 327 48 0 chr9 41895162 41895266 -82180906 - L2 LINE L2 -580 2839 2731 6 904 875 273 47 61 chr9 41895347 41895643 -82180529 + B4A SINE B4 1 292 0 6 904 185 132 26 0 chr9 41895651 41895689 -82180483 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 904 738 245 7 26 chr9 41895811 41895962 -82180210 - B1_Mur2 SINE Alu 0 149 2 6 904 191 200 82 16 chr9 41896269 41896330 -82179842 + L2 LINE L2 2827 2891 -528 6 904 426 94 0 0 chr9 41896364 41896428 -82179744 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 904 605 272 33 33 chr9 41896444 41896596 -82179576 - RSINE1 SINE B4 -12 153 2 6 904 495 292 112 67 chr9 41897257 41897330 -82178842 + ORR1E LTR MaLR 43 135 -224 6 904 3393 35 5 2 chr9 41897330 41897725 -82178447 - MTA_Mm LTR MaLR 0 396 1 6 904 495 292 112 67 chr9 41897725 41897835 -82178337 + ORR1E LTR MaLR 136 242 -117 6 904 207 0 0 0 chr9 41897835 41897858 -82178314 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 6 904 495 292 112 67 chr9 41897858 41897941 -82178231 + ORR1E LTR MaLR 243 322 -37 6 904 222 37 0 0 chr9 41897985 41898012 -82178160 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 904 327 250 36 0 chr9 41898334 41898421 -82177751 + ID4 SINE ID 6 95 -57 6 904 739 316 58 10 chr9 41898424 41898821 -82177351 + L1MB3 LINE L1 5732 6147 -36 6 904 239 324 26 26 chr9 41898878 41898954 -82177218 + ID SINE ID 6 81 -143 6 904 1045 138 9 0 chr9 41900019 41900362 -82175810 + (CA)n Simple_repeat Simple_repeat 1 346 0 6 904 192 77 0 0 chr9 41900804 41900830 -82175342 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 6 904 1875 220 42 22 chr9 41901627 41902032 -82174140 - MTD LTR MaLR -6 413 1 6 904 495 281 58 0 chr9 41903513 41903634 -82172538 + B4A SINE B4 1 128 -164 6 904 2090 173 65 18 chr9 41904300 41904701 -82171471 + MTC LTR MaLR 2 421 0 6 904 270 282 198 16 chr9 41906217 41906343 -82169829 - MamRep38 DNA hAT -146 149 1 6 904 336 24 0 0 chr9 41906821 41906862 -82169310 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 904 1004 188 30 30 chr9 41908330 41908528 -82167644 + B3A SINE B2 1 198 0 6 904 882 301 71 56 chr9 41909537 41909861 -82166311 - MER2 DNA MER2_type -7 338 10 6 904 236 338 37 43 chr9 41909878 41910039 -82166133 - MIR3 SINE MIR -43 165 6 6 904 1700 211 30 0 chr9 41910405 41910741 -82165431 - MTD LTR MaLR -52 367 22 6 904 198 0 0 0 chr9 41910745 41910767 -82165405 + (A)n Simple_repeat Simple_repeat 1 22 0 6 904 251 351 0 38 chr9 41910813 41910893 -82165279 - ID4 SINE ID -2 81 5 6 904 335 250 18 46 chr9 41910929 41911038 -82165134 + MTE2a LTR MaLR 273 378 -1 6 904 309 226 114 45 chr9 41911048 41911136 -82165036 - MIR SINE MIR -158 110 17 6 904 446 227 24 0 chr9 41911372 41911471 -82164701 - PB1D10 SINE Alu -1 116 16 6 904 213 39 0 0 chr9 41911637 41911663 -82164509 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 6 904 260 250 39 77 chr9 41912126 41912193 -82163979 - MER81 DNA AcHobo -2 112 47 6 904 234 0 0 0 chr9 41912193 41912219 -82163953 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 904 261 0 0 0 chr9 41913176 41913205 -82162967 + (A)n Simple_repeat Simple_repeat 1 29 0 6 904 371 206 0 14 chr9 41913212 41913286 -82162886 + ID4 SINE ID 2 74 -9 6 904 468 162 0 24 chr9 41913531 41913613 -82162559 + B1_Mur1 SINE Alu 70 149 0 6 904 332 199 83 56 chr9 41913784 41913928 -82162244 + B1F SINE Alu 1 148 -1 6 904 435 112 52 0 chr9 41913935 41914051 -82162121 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 6 904 348 83 0 0 chr9 41915134 41915182 -82160990 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 904 618 226 7 49 chr9 41915186 41915330 -82160842 - RSINE1 SINE B4 -20 145 8 6 904 293 164 148 0 chr9 41915748 41915809 -82160363 - PB1D10 SINE Alu -2 115 46 6 904 23 54 0 0 chr9 41917206 41917243 -82158929 + AT_rich Low_complexity Low_complexity 1 37 0 6 904 635 255 126 27 chr9 41919255 41919517 -82156655 + L1MB5 LINE L1 5885 6172 -2 6 904 222 128 0 0 chr9 41920503 41920542 -82155630 + (TAG)n Simple_repeat Simple_repeat 2 40 0 6 904 405 263 30 10 chr9 41921524 41921624 -82154548 - B1F SINE Alu -8 141 40 6 904 357 343 189 9 chr9 41921724 41922042 -82154130 - L2b LINE L2 -1 3374 3000 6 904 468 0 0 0 chr9 41922152 41922204 -82153968 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 6 904 1155 80 11 11 chr9 41922205 41922383 -82153789 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 904 554 152 19 0 chr9 41922388 41922493 -82153679 + GA-rich Low_complexity Low_complexity 1 107 0 6 904 444 322 43 16 chr9 41922598 41922784 -82153388 + MIRc SINE MIR 40 230 -38 6 904 525 203 11 18 chr9 41923901 41924183 -82151989 + (TG)n Simple_repeat Simple_repeat 1 279 0 6 904 446 293 24 8 chr9 41925276 41925400 -82150772 - MER3 DNA MER1_type -15 194 69 6 904 272 105 0 0 chr9 41925543 41925581 -82150591 + tRNA-Ala-GCY_ tRNA tRNA 27 64 -11 6 904 531 101 0 0 chr9 41925581 41925660 -82150512 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 904 493 248 42 14 chr9 41928486 41928629 -82147543 + B1F1 SINE Alu 1 147 -2 6 904 41 36 0 0 chr9 41928629 41928684 -82147488 + AT_rich Low_complexity Low_complexity 1 55 0 6 904 24 32 0 0 chr9 41928720 41928751 -82147421 + AT_rich Low_complexity Low_complexity 1 31 0 6 904 228 167 24 0 chr9 41930375 41930417 -82145755 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 904 207 290 29 14 chr9 41930666 41930736 -82145436 + MIRc SINE MIR 85 155 -113 6 904 29 70 0 0 chr9 41932247 41932304 -82143868 + GC_rich Low_complexity Low_complexity 1 57 0 6 904 233 211 18 0 chr9 41932309 41932366 -82143806 + (CCG)n Simple_repeat Simple_repeat 1 58 0 6 904 528 30 0 0 chr9 41933296 41933362 -82142810 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 904 657 0 0 0 chr9 41933362 41933434 -82142738 + (CA)n Simple_repeat Simple_repeat 1 73 0 6 904 304 338 58 14 chr9 41934534 41934672 -82141500 + MIRc SINE MIR 74 217 -51 6 904 536 280 0 60 chr9 41935142 41935275 -82140897 + RSINE1 SINE B4 13 137 -28 6 904 225 0 0 0 chr9 41935303 41935328 -82140844 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 904 228 224 14 29 chr9 41935351 41935420 -82140752 + (CATA)n Simple_repeat Simple_repeat 1 68 0 6 904 315 266 12 12 chr9 41935485 41935565 -82140607 + PB1D10 SINE Alu 19 98 -19 6 904 559 250 17 0 chr9 41935574 41935694 -82140478 + RSINE1 SINE B4 10 131 -34 6 904 477 255 107 52 chr9 41936272 41936524 -82139648 - LTR48 LTR ERV1 -521 266 1 6 904 310 176 247 21 chr9 41936587 41936680 -82139492 + PB1D10 SINE Alu 2 115 -2 6 904 243 0 0 0 chr9 41937443 41937470 -82138702 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 904 317 0 18 54 chr9 41937925 41937981 -82138191 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 904 231 258 149 15 chr9 41938165 41938232 -82137940 - PB1D10 SINE Alu -8 109 34 6 904 221 338 0 39 chr9 41938487 41938564 -82137608 - ID SINE ID -150 74 1 6 904 285 325 103 13 chr9 41939898 41940054 -82136118 + MIRb SINE MIR 99 268 0 6 904 966 116 0 0 chr9 41940487 41940634 -82135538 + (TCCA)n Simple_repeat Simple_repeat 3 149 0 7 904 963 246 19 10 chr9 41940636 41940841 -82135331 - B3 SINE B2 -9 207 1 7 904 538 294 97 23 chr9 41940891 41941107 -82135065 - LTR82B Low_complexity ERVL -517 313 82 7 904 763 311 98 21 chr9 41941279 41941614 -82134558 + LTR82A LTR ERVL 29 389 -483 7 904 636 261 49 0 chr9 41941662 41941804 -82134368 + B1F SINE Alu 1 149 0 7 904 760 263 18 18 chr9 41941808 41941978 -82134194 + B4 SINE B4 3 172 -120 7 904 411 359 118 15 chr9 41942177 41942516 -82133656 + LTR82A LTR ERVL 492 865 -7 7 904 344 329 52 39 chr9 41942794 41942949 -82133223 - MLT1J LTR MaLR -322 190 34 7 905 1373 57 45 0 chr9 41943046 41943223 -82132949 + B2_Mm1t SINE B2 2 186 -7 7 905 309 360 69 37 chr9 41943232 41943448 -82132724 - MamRep38 DNA hAT -58 237 15 7 905 1392 131 18 13 chr9 41943660 41943885 -82132287 - URR1A DNA MER1_type 0 226 1 7 905 710 294 61 38 chr9 41943990 41944252 -82131920 + B4A SINE B4 2 269 -23 7 905 356 40 0 20 chr9 41944253 41944304 -82131868 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 905 593 262 39 54 chr9 41944428 41944686 -82131486 + L1ME3 LINE L1 5320 5573 -591 7 905 405 0 0 0 chr9 41944703 41944748 -82131424 + (TTTC)n Simple_repeat Simple_repeat 4 48 0 7 905 225 0 0 0 chr9 41944774 41944799 -82131373 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 7 905 441 198 10 71 chr9 41944829 41944927 -82131245 - ID_B1 SINE B4 -110 114 23 7 905 247 197 128 90 chr9 41944860 41944938 -82131234 - ID4 SINE ID -2 81 1 7 905 612 273 63 75 chr9 41944993 41945341 -82130831 + L1ME3 LINE L1 5652 5995 -167 7 905 316 150 12 12 chr9 41945377 41945458 -82130714 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 7 905 467 329 60 0 chr9 41945458 41945607 -82130565 - RSINE1 SINE B4 -5 160 3 7 905 24 32 0 0 chr9 41945717 41945748 -82130424 + AT_rich Low_complexity Low_complexity 1 31 0 7 905 363 278 89 37 chr9 41945999 41946208 -82129964 + B4A SINE B4 1 284 -8 7 905 212 265 0 0 chr9 41946226 41946275 -82129897 + (CATA)n Simple_repeat Simple_repeat 2 50 0 7 905 244 164 18 0 chr9 41946330 41946385 -82129787 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 7 905 555 316 26 5 chr9 41946385 41946579 -82129593 - B3A SINE B2 0 198 1 7 905 249 220 0 33 chr9 41946806 41946867 -82129305 - MTB_Mm LTR MaLR 0 407 349 7 905 450 162 0 24 chr9 41946866 41946948 -82129224 - MTC LTR MaLR -341 80 1 7 905 6120 142 58 19 chr9 41946949 41948152 -82128020 - MTC-int LTR MaLR -7 1251 2 7 905 2484 153 34 12 chr9 41948152 41948562 -82127610 - MTC LTR MaLR -2 419 1 7 905 314 363 0 9 chr9 41949055 41949169 -82127003 - MIR SINE MIR -148 114 2 7 905 279 0 0 0 chr9 41950255 41950286 -82125886 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 905 900 103 0 0 chr9 41950286 41950441 -82125731 + (GA)n Simple_repeat Simple_repeat 1 156 0 7 905 205 136 21 83 chr9 41950443 41950539 -82125633 + (CAGA)n Simple_repeat Simple_repeat 1 90 0 7 905 251 291 148 41 chr9 41950717 41950839 -82125333 + MIRb SINE MIR 16 150 -118 7 905 413 280 39 2 chr9 41951660 41951860 -82124312 - L1MC LINE L1 -2349 5436 5225 7 905 413 276 36 22 chr9 41953110 41953247 -82122925 - MLT1K LTR MaLR -32 563 425 7 905 1258 257 97 81 chr9 41953769 41954277 -82121895 + Lx8 LINE L1 6439 6954 -519 7 905 734 271 6 23 chr9 41954279 41954453 -82121719 + Lx8 LINE L1 7107 7277 -196 7 905 228 286 13 13 chr9 41955408 41955486 -82120686 + ID4 SINE ID 2 79 -4 7 905 907 156 0 0 chr9 41955803 41955944 -82120228 - B1_Mur3 SINE Alu -7 142 2 7 905 561 30 0 0 chr9 41956472 41956539 -82119633 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 7 905 486 277 6 63 chr9 41956549 41956564 -82119608 - B1F1 SINE Alu 0 149 139 7 905 405 0 0 0 chr9 41956564 41956609 -82119563 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 7 905 486 277 6 63 chr9 41956609 41956751 -82119421 - B1F1 SINE Alu -11 138 1 7 905 2707 239 67 57 chr9 41957230 41958174 -82117998 + RCHARR1 DNA MER1_type 6 958 -16 7 905 22 56 0 0 chr9 41958740 41958776 -82117396 + AT_rich Low_complexity Low_complexity 1 36 0 7 905 1160 48 7 20 chr9 41958914 41959063 -82117109 - B1_Mus1 SINE Alu -1 147 1 7 905 308 241 13 0 chr9 41960507 41960586 -82115586 - ORR1D1 LTR MaLR -138 236 157 7 905 314 45 23 0 chr9 41960603 41960647 -82115525 + (GGGAGA)n Simple_repeat Simple_repeat 3 47 0 7 905 416 236 55 0 chr9 41960647 41960753 -82115419 - ORR1D1 LTR MaLR -191 176 65 7 905 957 264 26 29 chr9 41960753 41961096 -82115076 + RLTR15 LTR ERVK 1 342 -17 7 905 570 139 0 29 chr9 41961107 41961211 -82114961 - ORR1D1 LTR MaLR -273 101 1 7 905 1965 163 66 11 chr9 41961761 41962109 -82114063 + ORR1B2 LTR MaLR 1 367 0 7 905 534 152 59 25 chr9 41962367 41962487 -82113685 + B1_Mur1 SINE Alu 18 149 0 7 905 981 0 0 0 chr9 41962721 41962830 -82113342 + (TTC)n Simple_repeat Simple_repeat 3 111 0 7 905 559 283 107 79 chr9 41962907 41963160 -82113012 - MTE2b LTR MaLR -119 260 1 7 905 306 0 0 0 chr9 41963175 41963209 -82112963 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 905 1052 295 70 35 chr9 41963492 41964033 -82112139 + L1MB2 LINE L1 5609 6168 -3 7 905 889 138 27 7 chr9 41964435 41964581 -82111591 + B1_Mur4 SINE Alu 1 149 -1 7 905 417 181 0 0 chr9 41964581 41964675 -82111497 + (TG)n Simple_repeat Simple_repeat 1 94 0 7 905 571 273 55 50 chr9 41964675 41964856 -82111316 - B3A SINE B2 -16 182 1 7 905 389 216 0 143 chr9 41966271 41966390 -82109782 + MT2A LTR ERVL 184 285 -248 7 905 611 281 96 11 chr9 41966538 41966725 -82109447 - B3 SINE B2 -13 203 1 7 905 2314 209 109 21 chr9 41967277 41967908 -82108264 - Lx9 LINE L1 -1 7643 6957 7 905 478 294 87 56 chr9 41968416 41968668 -82107504 - B4 SINE B4 -25 267 8 7 905 318 303 164 38 chr9 41968670 41969092 -82107080 - L1MB5 LINE L1 0 6179 5705 7 905 204 217 0 0 chr9 41969147 41969193 -82106979 + CT-rich Low_complexity Low_complexity 1 46 0 7 905 766 217 0 182 chr9 41969193 41969424 -82106748 - B3A SINE B2 -1 194 6 7 905 1093 253 111 18 chr9 41970565 41970907 -82105265 - MTE2b LTR MaLR -1 378 5 7 905 491 278 0 77 chr9 41971009 41971165 -82105007 + B1F1 SINE Alu 5 148 -1 7 905 542 323 15 15 chr9 41971675 41971873 -82104299 + Tigger7 DNA MER2_type 1 198 -2293 7 905 264 286 127 20 chr9 41971916 41972066 -82104106 + Tigger7 DNA MER2_type 2318 2483 -8 7 905 961 218 134 22 chr9 41972816 41973093 -82103079 + MTE2b LTR MaLR 69 376 -3 7 905 2729 153 55 6 chr9 41973457 41973989 -82102183 + RLTR20B2 LTR ERVK 1 558 -2 7 905 418 202 124 16 chr9 41974126 41974247 -82101925 - MTE2b LTR MaLR -184 195 62 7 905 1268 295 114 26 chr9 41974289 41974795 -82101377 - L1MA5 LINE L1 -353 5938 5347 7 905 1692 162 79 41 chr9 41974795 41975162 -82101010 - ORR1C2 LTR MaLR 0 384 4 7 905 1268 295 40 56 chr9 41975162 41975807 -82100365 - L1MA5 LINE L1 -797 5346 4708 7 905 383 73 0 0 chr9 41975807 41975862 -82100310 + ORR1A2 LTR MaLR 1 55 -272 7 905 2327 89 3 44 chr9 41975974 41976315 -82099857 + ORR1A2 LTR MaLR 1 327 0 7 905 443 319 32 0 chr9 41976579 41976736 -82099436 - MER45A DNA Tip100 -16 162 1 7 905 270 0 0 0 chr9 41977033 41977063 -82099109 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 7 905 975 40 0 0 chr9 41977489 41977615 -82098557 + B1_Mm SINE Alu 22 147 0 7 905 259 222 0 0 chr9 41977898 41977952 -82098220 - MTD LTR MaLR -14 405 352 7 905 675 178 149 59 chr9 41978060 41978282 -82097890 - MT2A LTR ERVL -139 462 92 7 905 1627 213 132 48 chr9 41978336 41978426 -82097746 - RLTR20C LTR ERVK 0 541 452 7 905 216 0 0 0 chr9 41978426 41978450 -82097722 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 905 1882 189 70 13 chr9 41978450 41978858 -82097314 - RLTR20C LTR ERVK -90 451 1 7 905 276 190 96 48 chr9 41978858 41978924 -82097248 - MT2A LTR ERVL -463 70 1 7 905 976 196 133 13 chr9 41978964 41979197 -82096975 - MTD LTR MaLR -158 261 1 7 905 410 275 137 83 chr9 41979234 41979547 -82096625 - L1MD LINE L1 -1794 4352 4023 7 905 285 257 25 66 chr9 41979991 41980112 -82096060 - ORR1E LTR MaLR -243 116 1 7 905 283 262 50 33 chr9 41980162 41980321 -82095851 + MTEa LTR MaLR 153 324 -55 7 905 339 262 63 8 chr9 41980359 41980486 -82095686 + MTEa LTR MaLR 246 379 0 7 905 801 318 64 7 chr9 41980521 41980816 -82095356 + MTEa-int LTR MaLR 24 335 -1245 7 905 479 307 14 28 chr9 41980997 41981141 -82095031 + B1F1 SINE Alu 3 144 -5 7 905 55 29 0 0 chr9 41981151 41981220 -82094952 + AT_rich Low_complexity Low_complexity 1 69 0 7 905 554 213 0 0 chr9 41981645 41981753 -82094419 - B3 SINE B2 -107 109 2 7 905 22 0 0 0 chr9 41982188 41982210 -82093962 + AT_rich Low_complexity Low_complexity 1 22 0 7 905 618 39 0 0 chr9 41982303 41982380 -82093792 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 905 1258 248 69 40 chr9 41983243 41983297 -82092875 + RMER5 LTR ERV1 1 56 -478 7 905 402 74 0 0 chr9 41983297 41983351 -82092821 + (ATTG)n Simple_repeat Simple_repeat 2 55 0 7 905 1258 248 69 40 chr9 41983351 41983745 -82092427 + RMER5 LTR ERV1 57 462 -72 7 905 1506 299 159 36 chr9 41984090 41984818 -82091354 + RMER13A LTR ERVK 18 835 -25 7 905 272 234 13 25 chr9 41984990 41985069 -82091103 + RMER5 LTR ERV1 457 534 0 7 905 453 152 9 19 chr9 41985453 41985560 -82090612 + CT-rich Low_complexity Low_complexity 4 109 0 7 905 500 236 28 9 chr9 41985587 41985694 -82090478 - PB1D10 SINE Alu -8 109 1 7 905 2229 91 3 0 chr9 41986069 41986387 -82089785 + ORR1A2 LTR MaLR 1 319 -8 7 905 279 277 44 9 chr9 41986668 41986781 -82089391 + PB1D10 SINE Alu 1 117 0 7 905 928 144 12 0 chr9 41986829 41987002 -82089170 + CT-rich Low_complexity Low_complexity 2 176 0 7 905 1037 244 64 25 chr9 41987034 41987315 -82088857 - B4A SINE B4 0 292 1 7 905 664 180 56 32 chr9 41987863 41987989 -82088183 + B3 SINE B2 2 130 -86 7 905 612 27 0 0 chr9 41988029 41988103 -82088069 + (GA)n Simple_repeat Simple_repeat 2 75 0 7 905 1209 167 236 29 chr9 41988543 41988891 -82087281 + RLTR41 LTR ERV1 3 422 -24 7 905 1839 139 21 92 chr9 41988903 41989284 -82086888 + ORR1B1 LTR MaLR 41 394 0 7 905 290 203 80 13 chr9 41989487 41989562 -82086610 - MLT1J LTR MaLR -338 174 95 8 905 659 269 241 12 chr9 41989568 41989979 -82086193 + MLT1D LTR MaLR 1 505 0 8 905 940 222 40 20 chr9 41990095 41990297 -82085875 - B3 SINE B2 -7 209 4 8 905 2355 136 2 101 chr9 41990553 41990971 -82085201 + ORR1C1 LTR MaLR 1 377 -1 8 905 399 21 0 0 chr9 41992130 41992178 -82083994 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 905 484 227 112 16 chr9 41993454 41993642 -82082530 - MER34 LTR ERV1 0 542 337 8 905 648 120 0 0 chr9 41993932 41994032 -82082140 + (GGGA)n Simple_repeat Simple_repeat 2 101 0 8 905 252 246 39 123 chr9 41994045 41994175 -82081997 - MLT1H LTR MaLR -388 161 43 8 905 261 0 0 0 chr9 41995053 41995082 -82081090 + (TA)n Simple_repeat Simple_repeat 1 29 0 8 905 306 0 0 0 chr9 41995213 41995247 -82080925 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 905 462 348 0 0 chr9 41995254 41995395 -82080777 + RSINE1 SINE B4 5 145 -20 8 905 180 77 0 0 chr9 41995399 41995425 -82080747 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 905 275 224 42 56 chr9 41995603 41995674 -82080498 + ID4_ SINE ID 5 74 -9 8 905 245 167 0 0 chr9 41997358 41997400 -82078772 + ID SINE ID 3 44 -180 8 905 754 271 42 154 chr9 41997419 41997850 -82078322 + MTD LTR MaLR 21 419 0 8 905 626 295 46 0 chr9 41997850 41998016 -82078156 + ID_B1 SINE B4 33 206 -18 8 905 348 309 50 68 chr9 41998084 41998306 -82077866 - Lx8 LINE L1 -6 7467 7250 8 905 3281 62 10 0 chr9 41998674 41999091 -82077081 + BGLII LTR ERVK 1 421 0 8 905 281 240 133 55 chr9 41999145 41999273 -82076899 - LTR48 LTR ERV1 -646 141 4 8 905 291 167 0 0 chr9 41999659 41999725 -82076447 + GA-rich Low_complexity Low_complexity 2 67 0 8 905 348 313 32 58 chr9 41999747 41999903 -82076269 - ID_B1 SINE B4 -71 153 2 8 905 547 298 87 32 chr9 42000195 42000448 -82075724 + B4A SINE B4 7 273 -19 1 905 291 333 54 20 chr9 42000932 42001079 -82075093 + RMER15 LTR ERVL 408 559 -16 2 905 243 0 0 0 chr9 42001291 42001318 -82074854 + (T)n Simple_repeat Simple_repeat 1 27 0 3 905 203 336 87 39 chr9 42002161 42002288 -82073884 + L3b LINE CR1 186 318 -164 4 905 239 353 126 15 chr9 42002795 42002930 -82073242 + ORR1E LTR MaLR 2 151 -208 5 905 203 264 19 0 chr9 42002996 42003049 -82073123 + CT-rich Low_complexity Low_complexity 1 54 0 6 905 1574 182 65 10 chr9 42003387 42003697 -82072475 - ORR1B2 LTR MaLR 0 367 41 7 905 666 122 8 75 chr9 42003705 42003856 -82072316 - ORR1B2 LTR MaLR -239 135 1 8 905 674 287 72 40 chr9 42004296 42004572 -82071600 - MTD LTR MaLR -134 285 1 9 905 508 363 114 11 chr9 42005517 42005779 -82070393 + B4A SINE B4 1 289 -3 1 905 211 237 105 0 chr9 42007655 42007807 -82068365 + (CCCTA)n Simple_repeat Simple_repeat 2 169 0 1 905 703 269 119 5 chr9 42008414 42008608 -82067564 - B3 SINE B2 0 216 1 1 905 254 326 159 7 chr9 42008662 42008804 -82067368 + MIRc SINE MIR 5 175 -93 1 905 540 241 185 54 chr9 42009054 42009313 -82066859 - LTR16B2 LTR ERVL -79 383 91 1 905 242 283 0 0 chr9 42009571 42009631 -82066541 + (ATCTG)n Simple_repeat Simple_repeat 2 61 0 1 905 220 390 28 9 chr9 42009858 42009964 -82066208 + MER5B DNA MER1_type 68 175 -3 1 905 252 0 0 0 chr9 42010359 42010387 -82065785 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 905 331 289 129 36 chr9 42010731 42010871 -82065301 - MIRb SINE MIR -18 250 98 1 905 200 286 52 87 chr9 42011961 42012076 -82064096 - L2a LINE L2 0 3426 3316 1 905 629 177 9 0 chr9 42012547 42012660 -82063512 + PB1D9 SINE Alu 1 114 -6 2 905 403 151 24 32 chr9 42012687 42012743 -82063429 + polypurine Low_complexity Low_complexity 2 59 0 2 905 934 134 12 0 chr9 42012743 42012907 -82063265 + (GAAA)n Simple_repeat Simple_repeat 4 169 0 2 905 403 151 24 32 chr9 42012907 42012923 -82063249 + polypurine Low_complexity Low_complexity 60 74 0 2 905 1107 97 6 11 chr9 42012923 42013101 -82063071 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 2 905 403 151 24 32 chr9 42013101 42013150 -82063022 + polypurine Low_complexity Low_complexity 75 121 0 2 905 180 77 0 0 chr9 42013503 42013529 -82062643 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 905 369 240 39 20 chr9 42013823 42013925 -82062247 - RMER15 LTR ERVL -70 505 402 2 905 626 308 108 0 chr9 42014017 42014277 -82061895 - B4A SINE B4 -4 288 1 2 905 303 175 0 0 chr9 42014508 42014565 -82061607 + (CATA)n Simple_repeat Simple_repeat 4 60 0 2 905 434 290 137 21 chr9 42014578 42014768 -82061404 + RMER15 LTR ERVL 362 573 -2 3 905 678 229 0 0 chr9 42015964 42016143 -82060029 + (TATG)n Simple_repeat Simple_repeat 2 180 0 3 905 620 203 0 22 chr9 42016134 42016315 -82059857 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 3 905 271 262 204 20 chr9 42016589 42016622 -82059550 - MIRb SINE MIR -37 231 189 3 905 401 308 96 84 chr9 42016622 42016977 -82059195 - ORR1E LTR MaLR 0 359 1 3 905 271 262 204 20 chr9 42016977 42017095 -82059077 - MIRb SINE MIR -80 188 53 3 905 844 301 94 41 chr9 42017311 42017651 -82058521 + MTEb LTR MaLR 20 377 -2 3 905 183 80 0 0 chr9 42018593 42018618 -82057554 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 3 905 1037 75 61 12 chr9 42019006 42019169 -82057003 - B2_Mm2 SINE B2 -6 189 19 3 905 675 263 54 45 chr9 42019164 42019387 -82056785 - MLT1C LTR MaLR -220 247 23 3 905 380 271 50 17 chr9 42019488 42019608 -82056564 - B1F SINE Alu -7 142 19 3 905 681 264 76 24 chr9 42019608 42019859 -82056313 - MTD LTR MaLR -4 375 103 4 905 1571 152 0 23 chr9 42019854 42020117 -82056055 + RLTR16 LTR ERVK 175 431 -74 4 905 258 378 20 34 chr9 42021304 42021452 -82054720 - L3 LINE CR1 -37 4452 4307 4 905 242 211 39 0 chr9 42021991 42022043 -82054129 + RSINE1 SINE B4 3 56 -109 4 905 430 321 93 71 chr9 42022211 42022577 -82053595 - MLT1A LTR MaLR 0 374 1 4 905 217 317 36 12 chr9 42022809 42022892 -82053280 - L3 LINE CR1 -1573 2916 2832 4 905 1044 24 0 0 chr9 42022985 42023108 -82053064 + (GA)n Simple_repeat Simple_repeat 1 123 0 4 905 609 14 0 0 chr9 42023108 42023177 -82052995 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 4 905 43 0 0 0 chr9 42023341 42023384 -82052788 + AT_rich Low_complexity Low_complexity 1 43 0 4 905 498 280 8 0 chr9 42023387 42023505 -82052667 - RSINE1 SINE B4 0 165 47 4 905 228 266 36 60 chr9 42023972 42024056 -82052116 + B4A SINE B4 86 167 -125 5 905 391 197 0 14 chr9 42023989 42024061 -82052111 + PB1D10 SINE Alu 14 84 -33 5 905 367 146 0 0 chr9 42024312 42024367 -82051805 - ORR1B1 LTR MaLR 0 367 313 5 905 3202 131 37 21 chr9 42024373 42024888 -82051284 - RLTR12B LTR ERVK -5 523 1 5 905 1948 146 74 0 chr9 42024888 42025209 -82050963 - ORR1B1 LTR MaLR -49 345 1 5 905 318 132 0 0 chr9 42027897 42027950 -82048222 + (TTG)n Simple_repeat Simple_repeat 2 54 0 5 905 659 275 122 18 chr9 42029567 42029709 -82046463 - B4 SINE B4 -43 249 98 5 905 441 0 0 0 chr9 42029709 42029758 -82046414 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 5 905 659 275 122 18 chr9 42029758 42029837 -82046335 - B4 SINE B4 -195 97 6 5 905 2150 190 10 13 chr9 42029839 42030210 -82045962 + MTC LTR MaLR 2 371 -50 5 905 1772 103 126 10 chr9 42030210 42030503 -82045669 - ORR1A2 LTR MaLR 0 327 1 5 905 1678 245 43 5 chr9 42030581 42030950 -82045222 + Lx6 LINE L1 7068 7450 -10 5 905 386 151 14 0 chr9 42030965 42031038 -82045134 + GA-rich Low_complexity Low_complexity 3 76 0 6 905 612 253 90 53 chr9 42031304 42031492 -82044680 - B3A SINE B2 -3 195 1 6 905 593 292 54 78 chr9 42031796 42031840 -82044332 - L1MC2 LINE L1 -10 6323 6281 6 905 2317 85 3 73 chr9 42031840 42032194 -82043978 + ORR1A4 LTR MaLR 1 329 0 6 905 593 292 54 78 chr9 42032194 42032520 -82043652 - L1MC2 LINE L1 -53 6280 5962 6 905 2017 207 29 24 chr9 42032526 42032947 -82043225 - Lx5 LINE L1 -4 7046 6624 6 905 4151 155 37 24 chr9 42032948 42033697 -82042475 + Lx5 LINE L1 5851 6609 -441 6 905 733 253 196 11 chr9 42033704 42033980 -82042192 - L1MC2 LINE L1 -374 5970 5644 6 905 258 284 41 49 chr9 42033994 42034116 -82042056 - L1MC2 LINE L1 -768 5576 5456 6 905 348 314 28 42 chr9 42034829 42034972 -82041200 + MLT1A1 LTR MaLR 252 392 -16 6 905 776 269 93 37 chr9 42035264 42035480 -82040692 + B4A SINE B4 5 232 -60 6 905 695 230 48 75 chr9 42035482 42035774 -82040398 + B4A SINE B4 3 286 -6 6 905 351 0 0 0 chr9 42035815 42035854 -82040318 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 905 703 258 69 0 chr9 42036926 42037085 -82039087 + B3 SINE B2 47 216 0 6 905 205 352 86 0 chr9 42037315 42037420 -82038752 - MIRc SINE MIR -35 233 120 7 905 359 283 129 62 chr9 42037635 42038008 -82038164 + L2b LINE L2 2961 3358 -17 7 905 303 288 0 0 chr9 42038493 42038559 -82037613 + B3 SINE B2 48 113 -103 7 905 253 0 26 26 chr9 42038831 42038869 -82037303 + (TGGGGG)n Simple_repeat Simple_repeat 3 40 0 7 905 201 409 0 21 chr9 42038870 42038965 -82037207 + L2a LINE L2 3327 3419 -7 7 905 211 401 54 36 chr9 42039405 42039573 -82036599 - L3b LINE CR1 -12 470 300 7 905 414 0 0 0 chr9 42039827 42039873 -82036299 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 905 329 322 33 42 chr9 42039873 42039993 -82036179 - RSINE1 SINE B4 -45 120 2 7 905 1472 152 0 0 chr9 42040167 42040390 -82035782 - URR1B DNA MER1_type -2 223 1 7 905 331 362 7 34 chr9 42040548 42040694 -82035478 + MIRb SINE MIR 89 230 -38 7 905 540 0 0 0 chr9 42040699 42040759 -82035413 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 905 687 12 0 0 chr9 42042215 42042295 -82033877 + (TG)n Simple_repeat Simple_repeat 2 81 0 8 905 987 237 63 41 chr9 42042327 42042595 -82033577 - B4 SINE B4 -18 274 1 8 905 1928 158 92 15 chr9 42042921 42043312 -82032860 - MTC LTR MaLR 0 421 1 8 905 356 268 180 22 chr9 42043318 42043488 -82032684 + MER57C2 LTR ERV1 52 261 -150 8 905 318 244 141 22 chr9 42044173 42044265 -82031907 - MER57C2 LTR ERV1 -270 164 62 8 905 255 330 28 28 chr9 42044280 42044386 -82031786 - MIR SINE MIR -110 152 47 8 905 263 275 208 0 chr9 42044882 42045002 -82031170 + L1MA10 LINE L1 6190 6334 0 8 905 386 300 10 0 chr9 42045065 42045165 -82031007 + PB1 SINE Alu 5 105 -22 8 905 686 195 24 0 chr9 42045191 42045440 -82030732 + (TG)n Simple_repeat Simple_repeat 1 255 0 8 905 305 256 35 35 chr9 42045532 42045617 -82030555 - B4A SINE B4 -207 85 1 9 905 298 263 0 0 chr9 42048302 42048369 -82027803 + ID4 SINE ID 28 94 -58 9 905 195 296 54 43 chr9 42048828 42048920 -82027252 + L3 LINE CR1 4396 4488 -1 9 905 1084 288 191 3 chr9 42049935 42050331 -82025841 - RMER5 LTR ERV1 -18 516 46 9 905 938 51 8 0 chr9 42050468 42050586 -82025586 - ORR1A4 LTR MaLR -1 328 210 9 905 10054 143 33 112 chr9 42050623 42052135 -82024037 - ORR1A4-int LTR MaLR 0 1963 632 9 905 1132 69 14 0 chr9 42052135 42052280 -82023892 + B1_Mus2 SINE Alu 1 147 0 9 905 10054 143 33 112 chr9 42052280 42052899 -82023273 - ORR1A4-int LTR MaLR -1332 631 1 9 905 1815 112 79 63 chr9 42052902 42053218 -82022954 - ORR1A4 LTR MaLR -8 321 1 9 905 1223 238 69 80 chr9 42053478 42053851 -82022321 - MTE2b LTR MaLR -2 357 1 9 905 444 164 50 23 chr9 42054538 42054633 -82021539 - ORR1D2 LTR MaLR -1 418 274 9 905 221 233 0 27 chr9 42054746 42054821 -82021351 + (TATG)n Simple_repeat Simple_repeat 2 74 0 9 905 229 351 38 38 chr9 42054825 42054958 -82021214 - MLT2F LTR ERVL -322 341 209 9 905 207 0 0 0 chr9 42055267 42055290 -82020882 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 1 905 481 283 9 0 chr9 42055413 42055519 -82020653 - ID_B1 SINE B4 -9 215 109 1 905 2813 250 63 52 chr9 42055751 42056077 -82020095 - RCHARR1 DNA MER1_type 0 974 664 1 905 702 272 10 35 chr9 42056077 42056279 -82019893 - B3A SINE B2 0 198 2 1 905 2813 250 63 52 chr9 42056279 42056779 -82019393 - RCHARR1 DNA MER1_type -311 663 139 1 905 1113 78 0 0 chr9 42057000 42057141 -82019031 + B1_Mus1 SINE Alu 1 141 -7 1 905 180 0 0 0 chr9 42057141 42057161 -82019011 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 1 905 207 0 0 0 chr9 42057159 42057182 -82018990 + (A)n Simple_repeat Simple_repeat 1 23 0 1 905 248 237 167 8 chr9 42057605 42057737 -82018435 + L1MC LINE L1 5154 5306 -840 1 905 1076 179 117 21 chr9 42057752 42058043 -82018129 + MTD LTR MaLR 1 319 -100 1 905 286 263 104 49 chr9 42058045 42058070 -82018102 + ID_B1 SINE B4 56 207 -17 1 905 333 274 84 17 chr9 42058070 42058189 -82017983 + B1F2 SINE Alu 6 132 -17 1 905 431 255 196 12 chr9 42058292 42058478 -82017694 + L1ME2 LINE L1 5389 5597 -567 1 905 772 227 59 5 chr9 42058478 42058682 -82017490 + B3 SINE B2 1 215 -1 1 905 829 145 7 7 chr9 42059104 42059250 -82016922 + B1_Mus1 SINE Alu 3 148 0 1 905 656 223 72 0 chr9 42059480 42059619 -82016553 + B1_Mur4 SINE Alu 2 150 0 1 905 903 269 27 75 chr9 42059641 42060015 -82016157 + L1ME2 LINE L1 5651 6006 -158 1 905 254 270 81 0 chr9 42060653 42060727 -82015445 - ID4_ SINE ID -2 81 2 1 905 966 259 160 38 chr9 42061339 42061788 -82014384 - Lx8 LINE L1 -36 7437 6934 1 905 886 83 113 0 chr9 42062597 42062730 -82013442 + B1_Mus1 SINE Alu 1 148 0 1 905 216 308 15 0 chr9 42064438 42064503 -82011669 + CT-rich Low_complexity Low_complexity 4 69 0 1 905 707 161 10 17 chr9 42064650 42064789 -82011383 - B1_Mus1 SINE Alu 0 148 5 1 905 374 194 226 0 chr9 42064840 42064933 -82011239 - B3A SINE B2 -81 117 4 1 905 210 250 0 0 chr9 42066194 42066250 -82009922 + GA-rich Low_complexity Low_complexity 1 56 0 1 905 269 299 179 52 chr9 42066260 42066394 -82009778 + B4A SINE B4 64 214 -78 1 905 431 206 93 23 chr9 42066405 42066534 -82009638 + B1_Mur1 SINE Alu 11 148 -1 1 905 243 0 0 0 chr9 42066976 42067003 -82009169 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 905 327 340 10 10 chr9 42067006 42067110 -82009062 - B3A SINE B2 -94 104 1 1 905 778 254 20 48 chr9 42068538 42068786 -82007386 + B4 SINE B4 2 242 -50 1 905 252 0 0 0 chr9 42068830 42068858 -82007314 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 905 432 269 73 49 chr9 42068923 42069087 -82007085 - B3A SINE B2 0 198 31 1 905 1243 100 16 22 chr9 42069342 42069526 -82006646 - B2_Mm2 SINE B2 -11 184 2 1 905 180 77 0 0 chr9 42070074 42070100 -82006072 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 905 22 56 0 0 chr9 42071256 42071292 -82004880 + AT_rich Low_complexity Low_complexity 1 36 0 1 905 216 0 0 0 chr9 42072125 42072149 -82004023 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 1 905 277 146 0 0 chr9 42073329 42073384 -82002788 - MT2A LTR ERVL 0 533 479 1 905 337 322 122 18 chr9 42073488 42073709 -82002463 - MT2A LTR ERVL -105 428 185 1 906 1051 183 5 5 chr9 42074282 42074474 -82001698 + B3 SINE B2 1 192 -24 1 906 4266 54 0 2 chr9 42074627 42075131 -82001041 + RLTR1C LTR ERV1 1 503 0 1 906 204 158 0 0 chr9 42075291 42075329 -82000843 + A-rich Low_complexity Low_complexity 1 38 0 1 906 207 0 0 0 chr9 42075706 42075729 -82000443 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 906 341 248 61 37 chr9 42075759 42075910 -82000262 - RSINE1 SINE B4 0 292 82 1 906 757 297 12 46 chr9 42075926 42076166 -82000006 + B4 SINE B4 61 292 0 1 906 687 174 0 0 chr9 42076169 42076389 -81999783 + (CA)n Simple_repeat Simple_repeat 1 220 0 1 906 228 256 0 0 chr9 42076400 42076486 -81999686 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 906 343 301 26 33 chr9 42076549 42076700 -81999472 + MTE-int LTR MaLR 148 297 -1283 1 906 1388 294 120 12 chr9 42076794 42077000 -81999172 - Lx8 LINE L1 -2 7471 7234 1 906 432 0 0 0 chr9 42077000 42077048 -81999124 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 906 1388 294 120 12 chr9 42077048 42077423 -81998749 - Lx8 LINE L1 -240 7233 6827 1 906 659 35 12 0 chr9 42077559 42077645 -81998527 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 906 189 0 0 0 chr9 42077830 42077851 -81998321 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 906 731 218 0 77 chr9 42077875 42078044 -81998128 - RSINE1 SINE B4 -6 159 4 1 906 347 220 32 48 chr9 42078557 42078681 -81997491 - L1M3 LINE L1 -1122 5018 4897 1 906 245 269 47 28 chr9 42078700 42078807 -81997365 + Lx8 LINE L1 7354 7462 -11 1 906 180 301 22 88 chr9 42078936 42079027 -81997145 - L4 LINE RTE -901 1128 1044 1 906 1334 187 146 12 chr9 42079395 42079737 -81996435 + MTD LTR MaLR 29 379 0 1 906 689 308 20 4 chr9 42079767 42080022 -81996150 - Lx8 LINE L1 -1012 6461 6195 1 906 318 212 23 70 chr9 42080028 42080114 -81996058 + Lx7 LINE L1 6128 6209 -1487 1 906 1085 70 0 34 chr9 42080150 42080162 -81996010 - B1_Mus1 SINE Alu -5 143 136 1 906 195 42 0 0 chr9 42080162 42080186 -81995986 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1 906 1085 70 0 34 chr9 42080186 42080321 -81995851 - B1_Mus1 SINE Alu -13 135 1 1 906 423 0 0 0 chr9 42080691 42080738 -81995434 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 906 360 0 0 0 chr9 42080738 42080777 -81995395 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 906 2006 203 50 22 chr9 42080780 42081238 -81994934 - RMER15 LTR ERVL -75 500 30 1 906 238 339 0 0 chr9 42081391 42081456 -81994716 - ORR1E LTR MaLR -294 65 1 1 906 697 173 12 36 chr9 42081618 42081786 -81994386 - RLTR28 LTR ERVL -1 523 360 1 906 3307 48 2 8 chr9 42082297 42082695 -81993477 + MTA_Mm LTR MaLR 1 396 0 1 906 270 0 0 0 chr9 42082878 42082908 -81993264 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 906 189 0 0 0 chr9 42082908 42082928 -81993244 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 906 509 295 155 5 chr9 42083221 42083415 -81992757 + ID_B1 SINE B4 2 224 0 1 906 22 0 0 0 chr9 42083534 42083556 -81992616 + AT_rich Low_complexity Low_complexity 1 22 0 1 906 345 272 19 10 chr9 42084201 42084305 -81991867 + ID_B1 SINE B4 99 203 -21 1 906 517 312 48 26 chr9 42084335 42084565 -81991607 + MIR SINE MIR 28 262 0 1 906 564 15 0 0 chr9 42085081 42085146 -81991026 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 906 288 278 78 0 chr9 42085583 42085673 -81990499 + MER91B DNA Tip100 4 100 -90 1 906 1968 134 94 9 chr9 42085794 42086125 -81990047 + Lx2A1 LINE L1 6649 7007 -1 1 906 436 271 192 24 chr9 42086605 42086892 -81989280 + MTEa LTR MaLR 1 335 -44 1 906 520 241 149 12 chr9 42087319 42087330 -81988842 - B3A SINE B2 -6 192 182 1 906 393 39 0 0 chr9 42087330 42087381 -81988791 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1 906 527 232 97 13 chr9 42087381 42087537 -81988635 - B3 SINE B2 -17 181 2 1 906 540 0 0 0 chr9 42087641 42087701 -81988471 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 906 239 0 32 0 chr9 42087701 42087731 -81988441 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 906 312 235 55 94 chr9 42089353 42089480 -81986692 + RMER15 LTR ERVL 39 160 -415 1 906 837 309 22 4 chr9 42089480 42089756 -81986416 + RMER15 LTR ERVL 277 557 -18 1 906 594 0 0 0 chr9 42090664 42090730 -81985442 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 906 1591 33 0 0 chr9 42090790 42090973 -81985199 - L1_Mm LINE L1 -819 5064 4882 1 906 2839 47 0 0 chr9 42090973 42091344 -81984828 + L1Md_T LINE L1 6240 6582 0 1 906 311 271 0 0 chr9 42092397 42092467 -81983705 + PB1D10 SINE Alu 12 81 -36 1 906 1579 157 81 76 chr9 42092471 42092815 -81983357 + ORR1B1 LTR MaLR 49 394 0 1 906 1338 201 108 61 chr9 42092830 42093012 -81983160 - ORR1D2 LTR MaLR -10 360 196 1 906 441 0 0 0 chr9 42093012 42093061 -81983111 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 906 1338 201 108 61 chr9 42093061 42093222 -81982950 - ORR1D2 LTR MaLR -175 195 2 1 906 281 116 0 0 chr9 42093243 42093286 -81982886 - ORR1B2 LTR MaLR 0 367 325 1 906 298 73 0 0 chr9 42093287 42093328 -81982844 - ORR1B2 LTR MaLR -326 41 1 1 906 7202 173 59 18 chr9 42093328 42094776 -81981396 - ORR1B2-int LTR MaLR 0 1509 2 1 906 2027 138 49 60 chr9 42094777 42095147 -81981025 - ORR1B2 LTR MaLR 0 367 2 1 906 254 303 95 22 chr9 42095218 42095397 -81980775 + L1ME1 LINE L1 5908 6099 -80 1 906 507 17 0 0 chr9 42095676 42095736 -81980436 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 906 2274 242 44 30 chr9 42095902 42096561 -81979611 + L1_Mur3 LINE L1 319 986 -6742 1 906 10095 146 31 26 chr9 42096576 42098386 -81977786 + L1_Mur3 LINE L1 3615 5433 -447 1 906 374 206 65 0 chr9 42098380 42098472 -81977700 + Lx6 LINE L1 7173 7270 -190 1 906 3193 82 0 5 chr9 42098472 42098879 -81977293 + MTB_Mm LTR MaLR 1 405 -2 1 906 5714 126 101 19 chr9 42098883 42100023 -81976149 + MTB_Mm-int LTR MaLR 5 1237 -21 1 906 328 68 0 0 chr9 42100021 42100065 -81976107 + MTB_Mm LTR MaLR 364 407 0 1 906 1117 176 11 0 chr9 42100066 42100254 -81975918 + Lx6 LINE L1 7270 7459 -1 1 906 206 307 13 0 chr9 42100258 42100333 -81975839 - L2 LINE L2 -1437 1982 1907 1 906 231 36 0 0 chr9 42100344 42100372 -81975800 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1 906 494 327 6 30 chr9 42100400 42100567 -81975605 - RSINE1 SINE B4 0 165 3 1 906 344 125 16 0 chr9 42101153 42101217 -81974955 + (TCCC)n Simple_repeat Simple_repeat 1 65 0 1 906 338 321 113 15 chr9 42101693 42101826 -81974346 - RSINE1 SINE B4 -17 148 3 1 906 444 19 0 0 chr9 42102820 42102873 -81973299 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 906 394 294 0 35 chr9 42104232 42104345 -81971827 + RSINE1 SINE B4 57 165 0 1 906 823 296 48 0 chr9 42104359 42104650 -81971522 + L1MC3 LINE L1 5313 5617 -727 1 906 454 230 49 54 chr9 42105268 42105409 -81970763 + L1MC3 LINE L1 5733 5874 -1911 1 906 5263 90 28 17 chr9 42105409 42106155 -81970017 - Lx LINE L1 -2 6652 5899 1 906 454 230 49 54 chr9 42106155 42106197 -81969975 + L1MC3 LINE L1 5875 5915 -1870 1 906 722 130 9 0 chr9 42106401 42106516 -81969656 + B2_Mm2 SINE B2 36 151 -44 1 906 396 0 0 0 chr9 42106521 42106565 -81969607 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 906 253 339 37 0 chr9 42106753 42106862 -81969310 - Lx8 LINE L1 -198 7275 7163 2 906 567 242 194 12 chr9 42107141 42107157 -81969015 + L1MC3 LINE L1 5928 5943 -1842 1 906 225 0 0 0 chr9 42107157 42107182 -81968990 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2 906 567 246 191 11 chr9 42107182 42107428 -81968744 + L1MC3 LINE L1 5944 6271 -1771 1 906 221 329 0 0 chr9 42107513 42107595 -81968577 + (TTAGGC)n Simple_repeat Simple_repeat 4 85 0 2 906 436 306 14 7 chr9 42107642 42107790 -81968382 - MLT1D LTR MaLR -311 194 46 2 906 545 275 43 18 chr9 42107851 42108014 -81968158 + L1MC3 LINE L1 6628 6794 -991 1 906 302 283 156 64 chr9 42108085 42108128 -81968044 + ORR1E LTR MaLR 38 88 -271 2 906 1308 154 323 39 chr9 42108128 42108487 -81967685 - RMER6B LTR ERVK 0 461 1 2 906 302 283 156 64 chr9 42108487 42108738 -81967434 + ORR1E LTR MaLR 89 359 0 2 906 1471 106 211 23 chr9 42109633 42109893 -81966279 - RLTR27 LTR ERVK 0 309 1 2 906 180 77 0 0 chr9 42110007 42110033 -81966139 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 906 529 319 0 0 chr9 42110117 42110258 -81965914 - B1F SINE Alu -8 141 1 2 906 23 0 0 0 chr9 42110260 42110283 -81965889 + AT_rich Low_complexity Low_complexity 1 23 0 2 906 352 235 148 13 chr9 42110289 42110444 -81965728 + L1MC3 LINE L1 6901 7076 -709 1 906 796 118 36 15 chr9 42110470 42110607 -81965565 + B1_Mur4 SINE Alu 11 150 0 2 906 756 290 106 58 chr9 42110661 42111038 -81965134 + L1MC3 LINE L1 7132 7526 -259 1 906 3035 77 7 5 chr9 42111052 42111472 -81964700 - BGLII LTR ERVK 0 421 1 2 906 537 248 179 61 chr9 42111733 42112065 -81964107 - L1M4 LINE L1 -1223 5777 5412 2 906 247 196 107 0 chr9 42112209 42112265 -81963907 + PB1D10 SINE Alu 43 104 -45 2 906 251 218 25 50 chr9 42112666 42112755 -81963417 - L1M4 LINE L1 -5423 1481 1363 2 906 375 308 14 7 chr9 42112848 42112992 -81963180 - L1M4 LINE L1 -5594 1310 1166 2 906 990 70 7 84 chr9 42113067 42113222 -81962950 + B1_Mus2 SINE Alu 2 144 -3 2 906 250 26 0 49 chr9 42113222 42113263 -81962909 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2 906 458 275 73 13 chr9 42113278 42113429 -81962743 - L1M4 LINE L1 -5762 1142 983 2 906 282 292 21 0 chr9 42113605 42113701 -81962471 + L1M4 LINE L1 28 125 -6417 2 906 1377 260 46 44 chr9 42113812 42114267 -81961905 - MT2A LTR ERVL -71 462 7 2 906 1048 37 97 0 chr9 42114395 42114529 -81961643 + B1_Mm SINE Alu 1 147 0 2 906 441 0 0 0 chr9 42114660 42114709 -81961463 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 906 635 306 70 25 chr9 42114903 42115104 -81961068 - B4A SINE B4 -81 211 2 2 906 387 188 25 0 chr9 42115148 42115228 -81960944 - ID4_ SINE ID 0 83 2 2 906 201 39 0 0 chr9 42115437 42115463 -81960709 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 906 486 0 0 0 chr9 42117101 42117155 -81959017 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 906 1137 128 0 0 chr9 42117704 42117884 -81958288 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2 906 297 75 0 0 chr9 42117885 42117925 -81958247 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 2 906 869 126 0 7 chr9 42117946 42118090 -81958082 + (TTCC)n Simple_repeat Simple_repeat 3 145 0 2 906 928 131 22 0 chr9 42118109 42118246 -81957926 - B1_Mus1 SINE Alu -7 141 2 2 906 366 347 74 33 chr9 42118736 42119007 -81957165 + Charlie7 DNA MER1_type 57 338 -2274 2 906 384 301 12 93 chr9 42119490 42119635 -81956537 + B3A SINE B2 29 168 -30 2 906 429 121 0 0 chr9 42119635 42119718 -81956454 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 906 297 301 12 93 chr9 42119718 42119744 -81956428 + B2_Mm2 SINE B2 160 186 -9 2 906 22 35 0 0 chr9 42119784 42119813 -81956359 + AT_rich Low_complexity Low_complexity 1 29 0 2 906 1012 129 0 0 chr9 42119817 42119956 -81956216 + B1_Mus1 SINE Alu 3 141 -7 2 906 57 47 0 0 chr9 42119960 42120045 -81956127 + AT_rich Low_complexity Low_complexity 1 85 0 2 906 237 240 132 31 chr9 42120049 42120208 -81955964 + L1ME3B LINE L1 3372 3546 -2600 2 906 367 309 98 51 chr9 42121226 42121697 -81954475 + L1ME3B LINE L1 4349 4841 -1305 2 906 365 319 55 45 chr9 42121805 42122094 -81954078 + L1ME3B LINE L1 5051 5342 -804 2 906 664 284 13 0 chr9 42122197 42122352 -81953820 - B3A SINE B2 -34 164 8 2 906 289 284 156 16 chr9 42122547 42122733 -81953439 + L1ME3B LINE L1 5670 5881 -359 2 906 522 31 0 0 chr9 42123742 42123806 -81952366 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 906 1316 231 147 80 chr9 42123811 42123918 -81952254 + RMER1B Other Other 220 377 -689 2 906 270 0 0 0 chr9 42123918 42123948 -81952224 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 906 1316 194 331 54 chr9 42123948 42124462 -81951710 + RMER1B Other Other 378 1041 -25 2 906 406 229 64 37 chr9 42124462 42124571 -81951601 - PB1D7 SINE Alu -6 114 3 2 906 258 243 35 110 chr9 42124571 42124615 -81951557 - MT2B2 LTR ERVL -446 155 123 2 906 2535 212 77 93 chr9 42124615 42125458 -81950714 - RMER1B Other Other -45 1021 85 2 906 44 0 0 0 chr9 42125768 42125812 -81950360 + AT_rich Low_complexity Low_complexity 1 44 0 2 906 458 244 3 48 chr9 42126060 42126210 -81949962 + RLTR43A LTR ERVK 232 375 0 2 906 219 232 71 0 chr9 42126210 42126264 -81949908 - PB1D7 SINE Alu -57 63 6 2 906 239 224 118 0 chr9 42126815 42126891 -81949281 - Charlie7 DNA MER1_type -323 2289 2205 2 906 513 0 0 0 chr9 42126963 42127020 -81949152 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 906 437 257 0 0 chr9 42127488 42127597 -81948575 - PB1D10 SINE Alu -8 109 1 2 906 243 258 32 0 chr9 42127833 42127895 -81948277 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 2 906 245 376 60 6 chr9 42127937 42128103 -81948069 - B4 SINE B4 -82 210 36 2 906 746 184 44 0 chr9 42128849 42129007 -81947165 - B3A SINE B2 -33 165 1 2 906 530 283 7 33 chr9 42129432 42129582 -81946590 - RSINE1 SINE B4 -18 147 2 2 906 362 290 179 15 chr9 42129630 42129893 -81946279 + L2 LINE L2 2291 2596 -823 2 906 413 322 71 11 chr9 42129965 42130147 -81946025 - MER2 DNA MER2_type -40 305 113 2 906 499 271 38 19 chr9 42130179 42130337 -81945835 - RSINE1 SINE B4 -3 162 2 2 906 1722 92 55 7 chr9 42131086 42131361 -81944811 + MTC LTR MaLR 1 288 -133 2 906 348 24 0 0 chr9 42131620 42131661 -81944511 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 906 243 0 0 0 chr9 42131784 42131811 -81944361 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 906 639 256 110 14 chr9 42131814 42132032 -81944140 - B4A SINE B4 -50 242 4 2 906 553 270 45 50 chr9 42133242 42133605 -81942567 + ORR1E LTR MaLR 4 379 0 2 906 372 371 0 0 chr9 42135502 42135634 -81940538 - ID_B1 SINE B4 -9 215 84 2 906 399 246 106 50 chr9 42135709 42135850 -81940322 + RSINE1 SINE B4 3 151 -14 2 906 194 272 73 64 chr9 42135902 42136012 -81940160 - MIRm SINE MIR -123 153 43 2 906 335 280 33 17 chr9 42136129 42136249 -81939923 + MLT1I LTR MaLR 42 163 -248 2 906 288 0 0 0 chr9 42137286 42137318 -81938854 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 906 258 309 139 7 chr9 42140142 42140279 -81935893 + MER20 DNA MER1_type 55 209 -10 2 906 1040 97 23 6 chr9 42141551 42141728 -81934444 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 906 205 138 0 0 chr9 42141731 42141760 -81934412 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 2 906 1257 90 0 0 chr9 42141761 42141938 -81934234 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 2 906 543 321 83 51 chr9 42144033 42144309 -81931863 + Tigger7 DNA MER2_type 10 294 -2197 2 906 1097 264 58 23 chr9 42144322 42144667 -81931505 + Tigger7 DNA MER2_type 2133 2489 -2 2 906 245 272 12 24 chr9 42144716 42144799 -81931373 - ID4_ SINE ID -1 82 1 2 906 433 241 102 0 chr9 42145593 42145730 -81930442 - MER3 DNA MER1_type 0 209 59 2 906 1078 131 166 10 chr9 42149352 42149545 -81926627 - URR1A DNA MER1_type -3 223 1 2 906 232 296 52 22 chr9 42149695 42149830 -81926342 + L1MA8 LINE L1 6019 6157 -134 2 906 1090 217 19 0 chr9 42149863 42150075 -81926097 + B3 SINE B2 1 216 0 2 906 441 0 0 0 chr9 42150276 42150325 -81925847 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 2 906 1152 99 0 0 chr9 42150325 42150486 -81925686 - B2_Mm2 SINE B2 -34 161 1 2 906 351 0 0 0 chr9 42150728 42150767 -81925405 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 906 310 277 125 0 chr9 42153842 42153954 -81922218 - MER58A DNA MER1_type -47 177 52 2 906 643 324 27 67 chr9 42153961 42154259 -81921913 + B4 SINE B4 2 287 -5 2 906 492 18 0 0 chr9 42154447 42154504 -81921668 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 906 22 0 0 0 chr9 42158364 42158386 -81917786 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 220 228 70 0 chr9 42159407 42159464 -81916708 + ID4_ SINE ID 16 76 -7 2 906 252 0 0 0 chr9 42161371 42161399 -81914773 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 906 432 118 0 0 chr9 42161656 42161724 -81914448 + (CCA)n Simple_repeat Simple_repeat 3 70 0 2 906 504 0 0 0 chr9 42162272 42162328 -81913844 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 906 996 183 126 5 chr9 42162568 42162766 -81913406 - URR1A DNA MER1_type -4 222 1 2 906 493 274 20 0 chr9 42163157 42163310 -81912862 + MIRb SINE MIR 3 158 -110 2 906 621 40 0 0 chr9 42163360 42163436 -81912736 + (TCCCC)n Simple_repeat Simple_repeat 4 79 0 2 906 705 61 0 0 chr9 42165055 42165154 -81911018 + (GA)n Simple_repeat Simple_repeat 2 100 0 2 906 678 25 0 0 chr9 42165313 42165393 -81910779 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 906 278 310 153 24 chr9 42165881 42166082 -81910090 + MIRb SINE MIR 13 250 -18 2 906 226 305 21 21 chr9 42166190 42166287 -81909885 - MIR SINE MIR -77 131 35 2 906 603 0 0 0 chr9 42166338 42166405 -81909767 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 906 1539 146 0 0 chr9 42166434 42166660 -81909512 + URR1A DNA MER1_type 1 226 0 2 906 236 250 46 15 chr9 42168771 42168836 -81907336 - L2b LINE L2 0 3375 3309 2 906 280 278 139 0 chr9 42169401 42169509 -81906663 - MER2 DNA MER2_type -137 208 86 2 906 509 0 16 0 chr9 42169798 42169859 -81906313 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 906 443 332 100 58 chr9 42170088 42170328 -81905844 + B4 SINE B4 32 281 -11 2 906 286 313 24 55 chr9 42171200 42171370 -81904802 + MLT1B LTR MaLR 40 207 -260 2 906 369 0 0 0 chr9 42171561 42171602 -81904570 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 906 807 197 79 0 chr9 42171605 42171757 -81904415 + MTC LTR MaLR 20 183 -238 3 906 747 105 17 45 chr9 42171758 42171937 -81904235 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 3 906 686 207 165 1 chr9 42171955 42172134 -81904038 + MTC LTR MaLR 212 405 -14 3 906 184 292 0 0 chr9 42172507 42172555 -81903617 + L3 LINE CR1 2078 2125 -2364 3 906 536 279 114 79 chr9 42172558 42172760 -81903412 + B4A SINE B4 1 226 -66 3 906 1061 168 46 65 chr9 42172760 42172977 -81903195 + B3 SINE B2 1 213 -3 3 906 536 279 114 79 chr9 42172977 42173054 -81903118 + B4A SINE B4 227 290 -2 3 906 231 263 13 13 chr9 42173055 42173132 -81903040 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 906 224 210 8 53 chr9 42173257 42173321 -81902851 + B1F SINE Alu 56 149 0 3 906 194 268 13 53 chr9 42173433 42173508 -81902664 + L3 LINE CR1 11 82 -4407 3 906 190 173 96 0 chr9 42174218 42174270 -81901902 + MIRc SINE MIR 88 144 -124 3 906 2560 63 0 0 chr9 42174289 42174608 -81901564 + ORR1A2 LTR MaLR 1 319 -8 3 906 297 296 0 0 chr9 42175412 42175584 -81900588 + (TG)n Simple_repeat Simple_repeat 1 172 0 3 906 687 213 4 0 chr9 42177959 42178197 -81897975 + (TG)n Simple_repeat Simple_repeat 1 238 0 3 906 459 302 79 79 chr9 42178198 42178604 -81897568 + L1MC4 LINE L1 6662 7067 -975 3 906 393 318 127 60 chr9 42179084 42179352 -81896820 + L1MC4 LINE L1 7573 7858 -184 3 906 42 0 0 0 chr9 42179745 42179787 -81896385 + AT_rich Low_complexity Low_complexity 1 42 0 3 906 743 278 92 23 chr9 42180330 42180544 -81895628 + B4A SINE B4 2 230 -62 3 906 470 338 27 0 chr9 42180544 42180692 -81895480 + B3A SINE B2 1 152 -46 3 906 576 0 0 0 chr9 42180693 42180757 -81895415 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 906 285 342 74 8 chr9 42182684 42182805 -81893367 + MIR SINE MIR 38 166 -96 3 906 439 308 134 60 chr9 42186658 42187105 -81889067 - L2c LINE L2 0 3375 2928 3 906 182 275 244 41 chr9 42187273 42187470 -81888702 - L2a LINE L2 -227 3199 2963 3 906 457 280 16 31 chr9 42187504 42187633 -81888539 - L2a LINE L2 -529 2890 2764 3 906 744 215 12 65 chr9 42188287 42188456 -81887716 - MLT-int LTR MaLR -1572 163 4 3 906 716 299 88 54 chr9 42188483 42188780 -81887392 - MLT1A0 LTR MaLR -58 307 1 3 906 296 321 55 41 chr9 42189510 42189656 -81886516 - MIRb SINE MIR -7 261 114 3 906 203 200 0 0 chr9 42190510 42190545 -81885627 + A-rich Low_complexity Low_complexity 1 35 0 3 906 1028 47 0 8 chr9 42191778 42191906 -81884266 + B1_Mus1 SINE Alu 10 136 -12 3 906 243 0 0 0 chr9 42191908 42191935 -81884237 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 906 275 338 56 49 chr9 42192574 42192717 -81883455 - MIR SINE MIR -89 173 30 3 906 415 122 22 0 chr9 42197928 42198018 -81878154 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 906 481 217 29 0 chr9 42200513 42200688 -81875484 + GA-rich Low_complexity Low_complexity 1 180 0 3 906 341 280 80 0 chr9 42201984 42202084 -81874088 - MER5A DNA MER1_type 0 189 82 3 906 621 38 0 0 chr9 42202142 42202222 -81873950 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 906 189 213 0 0 chr9 42203832 42203879 -81872293 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 907 897 36 72 0 chr9 42206957 42207124 -81869048 + (GAA)n Simple_repeat Simple_repeat 2 180 0 3 907 533 94 0 12 chr9 42208286 42208372 -81867800 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 907 330 294 116 0 chr9 42208728 42208874 -81867298 + Lx9 LINE L1 7391 7553 -91 3 907 212 198 57 23 chr9 42210263 42210351 -81865821 + (TA)n Simple_repeat Simple_repeat 2 92 0 3 907 276 175 0 0 chr9 42210367 42210430 -81865742 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 907 315 352 42 25 chr9 42210614 42210853 -81865319 + ERVL-B4-int LTR ERVL 573 815 -4181 3 907 443 353 56 4 chr9 42210897 42211147 -81865025 + ERVL-B4-int LTR ERVL 895 1157 -3839 3 907 442 266 23 21 chr9 42211547 42211690 -81864482 + B1F SINE Alu 3 141 -8 3 907 341 289 0 0 chr9 42211698 42211781 -81864391 + ID4_ SINE ID 1 83 0 3 907 439 363 111 4 chr9 42211783 42212018 -81864154 + ERVL-B4-int LTR ERVL 1718 1977 -3019 3 907 265 206 14 68 chr9 42212808 42212881 -81863291 + MLT1A1 LTR MaLR 340 408 0 3 907 546 350 36 12 chr9 42213237 42213632 -81862540 + ERVL-B4-int LTR ERVL 3048 3507 -2250 3 907 396 0 0 0 chr9 42213757 42213801 -81862371 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 907 491 361 54 24 chr9 42213890 42214185 -81861987 + ERVL-B4-int LTR ERVL 3668 3971 -1696 3 907 309 358 67 27 chr9 42214231 42214455 -81861717 + ERVL-B4-int LTR ERVL 4038 4270 -1397 3 907 269 289 39 13 chr9 42214485 42214562 -81861610 + ORR1E LTR MaLR 3 81 -278 3 907 1347 160 151 11 chr9 42215907 42216192 -81859980 + RLTR16 LTR ERVK 11 335 -170 3 907 1200 115 0 0 chr9 42216197 42216431 -81859741 + (TG)n Simple_repeat Simple_repeat 1 234 0 3 907 352 333 50 57 chr9 42216449 42216589 -81859583 - RSINE1 SINE B4 -24 141 3 3 907 856 179 14 0 chr9 42218021 42218166 -81858006 - B1_Mur1 SINE Alu 0 149 3 3 907 424 277 43 92 chr9 42218023 42218186 -81857986 - B4 SINE B4 -69 223 69 3 907 337 296 54 112 chr9 42218048 42218272 -81857900 - MT2B LTR ERVL -323 278 68 3 907 323 346 62 62 chr9 42218320 42218594 -81857578 + L1MC4a LINE L1 5719 5992 -1890 3 907 38 22 0 0 chr9 42220480 42220525 -81855647 + AT_rich Low_complexity Low_complexity 1 45 0 3 907 195 129 0 0 chr9 42222144 42222175 -81853997 + (T)n Simple_repeat Simple_repeat 1 31 0 3 907 266 148 19 0 chr9 42223618 42223672 -81852500 + G-rich Low_complexity Low_complexity 2 56 0 3 907 324 292 42 0 chr9 42224533 42224629 -81851543 + ID_B1 SINE B4 73 172 -52 3 907 359 278 44 0 chr9 42224552 42224642 -81851530 + PB1D10 SINE Alu 14 107 -10 3 907 335 209 162 9 chr9 42224752 42224863 -81851309 - L1MEe LINE L1 -4021 833 706 3 907 236 157 39 0 chr9 42224875 42224926 -81851246 + CT-rich Low_complexity Low_complexity 1 53 0 3 907 580 120 162 27 chr9 42224926 42225037 -81851135 - B1_Mus1 SINE Alu -8 140 15 3 907 181 122 0 75 chr9 42226968 42227021 -81849151 + G-rich Low_complexity Low_complexity 5 53 0 3 907 183 296 82 73 chr9 42227402 42227621 -81848551 + L2 LINE L2 2414 2634 -785 3 907 271 308 88 0 chr9 42227763 42227854 -81848318 + LTR33B LTR ERVL 40 138 -365 3 907 678 214 214 0 chr9 42228607 42228785 -81847387 + B3 SINE B2 1 216 0 3 907 205 180 157 20 chr9 42229090 42229141 -81847031 - MIR3 SINE MIR -18 190 133 3 907 438 190 13 0 chr9 42229641 42229720 -81846452 - B1_Mus2 SINE Alu -59 88 9 3 907 348 88 0 0 chr9 42229982 42230039 -81846133 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 907 223 208 75 0 chr9 42230392 42230445 -81845727 + (CATG)n Simple_repeat Simple_repeat 4 60 0 3 907 476 291 7 41 chr9 42230482 42230629 -81845543 - B4 SINE B4 -80 212 71 3 907 228 292 37 19 chr9 42230785 42230893 -81845279 + L1ME1 LINE L1 5900 6009 -170 3 907 1134 76 14 0 chr9 42231650 42231795 -81844377 + B1_Mus2 SINE Alu 1 147 0 3 907 327 244 12 0 chr9 42233413 42233495 -81842677 + Lx8 LINE L1 7089 7171 -302 3 907 477 0 0 0 chr9 42233675 42233728 -81842444 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 907 892 124 29 21 chr9 42233730 42233870 -81842302 - B1_Mur3 SINE Alu -6 143 3 3 907 383 243 207 13 chr9 42234067 42234217 -81841955 + B3A SINE B2 1 179 -19 3 907 280 391 0 0 chr9 42234230 42234358 -81841814 + (CATG)n Simple_repeat Simple_repeat 3 130 0 3 907 22 0 0 0 chr9 42234471 42234493 -81841679 + AT_rich Low_complexity Low_complexity 1 22 0 3 907 26 50 0 0 chr9 42234537 42234577 -81841595 + AT_rich Low_complexity Low_complexity 1 40 0 3 907 188 340 107 59 chr9 42236234 42236506 -81839666 - L2a LINE L2 -19 3407 3123 3 907 205 302 0 45 chr9 42237272 42237338 -81838834 + L2a LINE L2 3346 3408 -18 3 907 186 332 39 126 chr9 42238389 42238549 -81837623 + L2a LINE L2 3212 3353 -73 3 907 477 268 45 13 chr9 42238549 42238704 -81837468 - RSINE1 SINE B4 -4 161 2 3 907 186 332 39 126 chr9 42238704 42238774 -81837398 + L2a LINE L2 3354 3422 -4 3 907 637 239 54 27 chr9 42239057 42239242 -81836930 - B3A SINE B2 -7 191 2 3 907 355 312 34 61 chr9 42239377 42239524 -81836648 + MLT1N2 LTR MaLR 406 548 -14 3 907 372 230 40 0 chr9 42239875 42239948 -81836224 + PB1D10 SINE Alu 1 76 -41 3 907 703 263 15 58 chr9 42239948 42240154 -81836018 + B3A SINE B2 1 197 -1 3 907 248 290 6 17 chr9 42240154 42240239 -81835933 + PB1D10 SINE Alu 61 146 -3 3 907 862 188 24 86 chr9 42240360 42240570 -81835602 + B3A SINE B2 2 198 0 3 907 922 282 93 15 chr9 42241384 42241636 -81834536 + B4A SINE B4 1 275 -17 3 907 435 125 0 0 chr9 42241636 42241708 -81834464 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 907 922 282 93 15 chr9 42241708 42241725 -81834447 + B4A SINE B4 276 291 -1 3 907 298 185 123 0 chr9 42242554 42242619 -81833553 + ID2 SINE ID 4 76 -7 3 907 237 256 93 47 chr9 42242723 42242809 -81833363 + B4A SINE B4 81 170 -122 3 907 292 258 107 58 chr9 42242732 42242835 -81833337 + B1_Mus1 SINE Alu 9 116 -32 3 907 372 147 0 0 chr9 42243352 42243427 -81832745 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 907 189 0 0 0 chr9 42244306 42244327 -81831845 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 3 907 424 316 17 0 chr9 42244331 42244448 -81831724 - ID_B1 SINE B4 -24 200 82 3 907 337 206 10 10 chr9 42244461 42244559 -81831613 + CT-rich Low_complexity Low_complexity 1 98 0 3 907 316 256 166 65 chr9 42244734 42245006 -81831166 - B4 SINE B4 -13 279 3 3 907 665 266 16 58 chr9 42245626 42245814 -81830358 - B3A SINE B2 -18 180 1 3 907 641 270 103 17 chr9 42245819 42246053 -81830119 - MER33 DNA MER1_type -69 255 2 3 907 295 265 29 10 chr9 42247486 42247589 -81828583 + PB1D10 SINE Alu 4 108 -9 3 907 626 295 13 6 chr9 42248343 42248500 -81827672 + RSINE1 SINE B4 2 159 -6 3 907 306 0 0 0 chr9 42248613 42248647 -81827525 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 3 907 371 281 26 17 chr9 42248804 42248920 -81827252 + PB1D10 SINE Alu 1 117 0 4 907 1921 206 148 29 chr9 42249130 42249611 -81826561 + RMER15 LTR ERVL 38 575 0 4 907 1325 282 130 29 chr9 42249731 42250534 -81825638 + L1MC1 LINE L1 5438 6338 -6 4 907 356 220 91 52 chr9 42251225 42251348 -81824824 + PB1D10 SINE Alu 12 133 -16 4 907 242 311 27 0 chr9 42251625 42251699 -81824473 - MIRc SINE MIR -121 147 72 4 907 488 268 9 0 chr9 42251732 42251844 -81824328 + ID_B1 SINE B4 107 219 -5 4 907 428 35 0 17 chr9 42253215 42253274 -81822898 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 4 907 224 300 152 39 chr9 42253362 42253520 -81822652 - MIRc SINE MIR -29 239 66 4 907 299 329 33 79 chr9 42253613 42253765 -81822407 + MIRc SINE MIR 3 147 -121 4 907 206 315 0 0 chr9 42254228 42254282 -81821890 + L3b LINE CR1 161 214 -268 4 907 436 238 127 30 chr9 42254690 42254702 -81821470 + B4A SINE B4 74 147 -145 4 907 686 101 35 35 chr9 42254702 42254815 -81821357 + B1_Mur3 SINE Alu 1 113 -36 4 907 366 23 0 0 chr9 42254831 42254874 -81821298 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 4 907 717 43 0 0 chr9 42260262 42260355 -81815817 + (GA)n Simple_repeat Simple_repeat 1 93 0 4 907 1209 68 0 0 chr9 42260403 42260550 -81815622 + B1_Mus2 SINE Alu 1 147 0 4 907 801 131 0 0 chr9 42260552 42260682 -81815490 + (GAAA)n Simple_repeat Simple_repeat 2 131 0 4 907 770 249 29 10 chr9 42262075 42262282 -81813890 + B3 SINE B2 3 213 -3 4 907 1180 163 78 22 chr9 42262752 42263022 -81813150 + RCHARR1 DNA MER1_type 690 974 0 4 907 531 259 59 7 chr9 42264073 42264209 -81811963 + ID_B1 SINE B4 80 222 -2 4 907 259 282 38 13 chr9 42264224 42264303 -81811869 + ID4_ SINE ID 3 83 0 4 907 700 264 32 0 chr9 42266585 42266740 -81809432 + B3A SINE B2 1 160 -38 4 907 516 111 0 0 chr9 42266748 42266829 -81809343 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 907 890 343 103 37 chr9 42270988 42271551 -81804621 - MER82 DNA MER2_type -9 644 45 4 907 369 280 50 0 chr9 42272045 42272145 -81804027 + L1M5 LINE L1 5151 5255 -891 4 907 261 276 25 33 chr9 42272163 42272283 -81803889 + L1M5 LINE L1 5308 5426 -747 4 907 289 301 0 0 chr9 42272736 42272819 -81803353 - PB1D10 SINE Alu -33 84 2 4 907 912 129 0 0 chr9 42273101 42273248 -81802924 + (TA)n Simple_repeat Simple_repeat 1 147 0 4 907 500 107 0 37 chr9 42273296 42273403 -81802769 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 907 378 214 0 28 chr9 42273479 42273551 -81802621 + B4 SINE B4 1 70 -222 4 907 333 0 0 0 chr9 42273554 42273591 -81802581 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 907 197 77 0 49 chr9 42274574 42274615 -81801557 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 4 907 225 0 0 0 chr9 42274616 42274641 -81801531 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 907 548 259 145 10 chr9 42274686 42274855 -81801317 + B3A SINE B2 11 186 -9 4 907 219 88 0 0 chr9 42275367 42275401 -81800771 + (GGCTG)n Simple_repeat Simple_repeat 1 34 0 4 907 437 261 199 0 chr9 42275739 42275915 -81800257 - MIRb SINE MIR -24 244 34 4 907 283 364 53 29 chr9 42276025 42276195 -81799977 - MER5A DNA MER1_type -2 187 14 4 907 233 240 0 0 chr9 42276769 42276819 -81799353 + ID4_ SINE ID 21 70 -13 4 907 560 221 62 0 chr9 42277809 42277954 -81798218 - B4 SINE B4 -137 155 2 4 907 608 211 45 52 chr9 42278188 42278408 -81797764 - B3A SINE B2 0 216 1 4 907 434 259 5 11 chr9 42278874 42279020 -81797152 + B1F SINE Alu 1 143 -4 4 907 234 0 0 0 chr9 42279029 42279055 -81797117 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 907 577 139 9 9 chr9 42280850 42280959 -81795213 + A-rich Low_complexity Low_complexity 2 110 0 4 907 321 372 7 14 chr9 42280997 42281136 -81795036 - MIRb SINE MIR -120 148 11 4 907 411 299 97 14 chr9 42282117 42282324 -81793848 + ID_B1 SINE B4 1 224 0 4 907 418 247 32 0 chr9 42282946 42283039 -81793133 + B1F1 SINE Alu 2 97 -52 4 907 261 163 0 0 chr9 42283050 42283099 -81793073 + GA-rich Low_complexity Low_complexity 4 52 0 4 907 273 349 106 30 chr9 42283322 42283520 -81792652 - MIR SINE MIR -32 230 18 4 907 437 284 0 33 chr9 42283788 42283908 -81792264 - PB1D10 SINE Alu 0 117 2 4 907 283 233 33 0 chr9 42284330 42284390 -81791782 + ID4 SINE ID 2 63 -20 4 907 3174 63 5 2 chr9 42284509 42284904 -81791268 - MTA_Mm LTR MaLR 0 396 1 4 907 241 298 48 0 chr9 42285338 42285460 -81790712 - L1M5 LINE L1 -309 5870 5742 4 907 257 324 94 22 chr9 42285586 42285810 -81790362 - Charlie5 DNA MER1_type 0 2624 2385 4 907 706 306 61 69 chr9 42285846 42286123 -81790049 + B4A SINE B4 11 285 -7 4 907 557 72 0 12 chr9 42286139 42286223 -81789949 + (CACAC)n Simple_repeat Simple_repeat 2 84 0 4 907 1132 241 4 19 chr9 42286254 42286524 -81789648 - ORR1D1 LTR MaLR 0 374 109 4 907 698 121 335 82 chr9 42286530 42286811 -81789361 - RLTR15 LTR ERVK -6 353 1 4 907 731 121 0 0 chr9 42286811 42286925 -81789247 - ORR1D1 LTR MaLR -260 114 1 4 907 1391 149 18 30 chr9 42287042 42287371 -81788801 - ORR1A4 LTR MaLR -35 294 1 4 907 299 253 159 37 chr9 42287544 42287733 -81788439 - L1M5 LINE L1 -2579 3567 3356 4 907 481 280 30 0 chr9 42287869 42288001 -81788171 - ID_B1 SINE B4 -8 216 81 4 907 415 250 58 8 chr9 42288153 42288274 -81787898 - L1MEg LINE L1 -2265 3881 3755 4 907 504 299 80 145 chr9 42288360 42288775 -81787397 - RMER13A LTR ERVK -15 612 186 4 907 1215 255 178 22 chr9 42288961 42289539 -81786633 - L1MEg LINE L1 -2384 3762 3095 4 907 417 259 133 15 chr9 42289660 42289856 -81786316 - L1MEg LINE L1 -3053 3093 2875 4 907 1282 301 143 40 chr9 42289857 42290565 -81785607 + MER54A LTR ERVL 2 782 -119 4 907 471 276 7 88 chr9 42290578 42290725 -81785447 + B4A SINE B4 12 146 -146 4 907 389 314 8 32 chr9 42290859 42290984 -81785188 + MER54A LTR ERVL 770 891 -10 4 907 28 0 0 0 chr9 42290995 42291023 -81785149 + AT_rich Low_complexity Low_complexity 1 28 0 4 907 773 237 57 0 chr9 42291043 42291237 -81784935 - B3 SINE B2 -11 205 1 4 907 367 325 76 20 chr9 42291926 42292230 -81783942 - L1MEg LINE L1 -4225 2017 1697 4 907 918 280 62 16 chr9 42292228 42292598 -81783574 - L1MB4 LINE L1 0 6180 5794 4 907 718 266 142 11 chr9 42292614 42292895 -81783277 - MER2 DNA MER2_type -5 340 23 4 907 474 273 74 57 chr9 42293085 42293260 -81782912 + MLT1A LTR MaLR 1 178 -196 4 907 503 248 27 34 chr9 42293298 42293444 -81782728 - B1F1 SINE Alu -2 147 3 4 907 222 37 0 0 chr9 42293643 42293670 -81782502 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 4 907 2803 274 124 35 chr9 42293708 42295125 -81781047 - L1MB4 LINE L1 -1028 5112 3569 4 907 354 80 0 0 chr9 42295445 42295495 -81780677 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 907 884 266 50 40 chr9 42295528 42295806 -81780366 - B4 SINE B4 -5 287 7 4 907 428 266 124 37 chr9 42296200 42296399 -81779773 - ORR1E LTR MaLR -84 286 81 4 907 3833 291 59 55 chr9 42296447 42296850 -81779322 - MTE-int LTR MaLR -42 1538 1102 4 907 618 26 0 0 chr9 42296850 42296926 -81779246 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 907 3833 291 59 55 chr9 42296926 42298053 -81778119 - MTE-int LTR MaLR -479 1101 1 4 907 254 239 209 0 chr9 42298499 42298566 -81777606 + ID4 SINE ID 3 83 0 4 907 636 296 46 48 chr9 42299625 42300036 -81776136 + MLT1G3 LTR MaLR 204 590 -5 4 907 851 171 7 0 chr9 42300402 42300548 -81775624 - B1_Mus1 SINE Alu 0 148 2 4 907 307 189 81 0 chr9 42300622 42300696 -81775476 + MIR SINE MIR 183 262 0 4 907 775 242 242 0 chr9 42300826 42301099 -81775073 + MTD LTR MaLR 1 339 -80 4 907 639 133 0 0 chr9 42301192 42301297 -81774875 + (TCC)n Simple_repeat Simple_repeat 3 107 0 4 907 587 226 9 0 chr9 42301301 42301416 -81774756 - B1_Mur4 SINE Alu -23 127 12 4 907 939 153 0 0 chr9 42301564 42301814 -81774358 + (TG)n Simple_repeat Simple_repeat 1 250 0 4 907 2902 32 3 36 chr9 42302145 42302503 -81773669 - ORR1A1 LTR MaLR 0 346 1 4 907 262 335 68 68 chr9 42303051 42303346 -81772826 + ORR1E LTR MaLR 63 357 -2 4 907 676 227 19 0 chr9 42303497 42303651 -81772521 - B3A SINE B2 0 198 42 4 907 253 335 62 51 chr9 42303789 42303984 -81772188 + L2 LINE L2 2378 2574 -845 4 907 284 186 143 0 chr9 42304380 42304450 -81771722 - MTEa LTR MaLR -5 374 295 4 907 1821 190 49 32 chr9 42304552 42304581 -81771591 - ORR1D1 LTR MaLR -19 355 333 4 907 2202 173 34 5 chr9 42304581 42304988 -81771184 - MTC LTR MaLR 0 421 3 4 907 1821 169 31 17 chr9 42304988 42305320 -81770852 - ORR1D1 LTR MaLR -42 332 2 4 907 255 93 0 0 chr9 42305724 42305767 -81770405 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 4 907 300 83 0 0 chr9 42305792 42305840 -81770332 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 907 186 118 0 0 chr9 42305967 42306001 -81770171 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 907 287 256 33 11 chr9 42306471 42306562 -81769610 + MTEa LTR MaLR 287 379 0 4 907 382 302 99 57 chr9 42307022 42307285 -81768887 - B4A SINE B4 -12 280 7 4 907 200 342 71 42 chr9 42307437 42307605 -81768567 - MIR SINE MIR -24 238 66 4 907 522 243 105 26 chr9 42307615 42307767 -81768405 + RSINE1 SINE B4 2 165 0 4 907 853 215 139 29 chr9 42307801 42307907 -81768265 + RLTR25B LTR ERVK 758 889 -139 4 907 387 0 0 0 chr9 42307907 42307950 -81768222 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 907 762 83 0 0 chr9 42307950 42308069 -81768103 + (GA)n Simple_repeat Simple_repeat 2 121 0 4 907 853 215 139 29 chr9 42308069 42308205 -81767967 + RLTR25B LTR ERVK 890 1027 -1 4 907 23 33 0 0 chr9 42308699 42308729 -81767443 + AT_rich Low_complexity Low_complexity 1 30 0 4 907 358 234 13 25 chr9 42308739 42308818 -81767354 + RSINE1 SINE B4 3 80 -85 4 907 393 286 117 50 chr9 42308876 42309115 -81767057 + MER2 DNA MER2_type 90 344 -1 5 907 436 200 7 29 chr9 42309253 42309392 -81766780 + (TA)n Simple_repeat Simple_repeat 2 137 0 5 907 21 0 0 0 chr9 42309882 42309903 -81766269 + AT_rich Low_complexity Low_complexity 1 21 0 5 907 567 252 37 0 chr9 42312112 42312247 -81763925 + ID_B1 SINE B4 70 209 -15 5 907 318 229 0 0 chr9 42312247 42312343 -81763829 + (TG)n Simple_repeat Simple_repeat 2 97 0 5 907 222 37 0 0 chr9 42312465 42312492 -81763680 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 5 907 380 287 171 5 chr9 42313649 42313857 -81762315 + B4A SINE B4 1 242 -50 5 907 1258 255 49 9 chr9 42313854 42314182 -81761990 - MTEa LTR MaLR -6 373 33 5 907 684 67 0 0 chr9 42314250 42314340 -81761832 + (TC)n Simple_repeat Simple_repeat 1 90 0 5 907 310 246 133 7 chr9 42314982 42315117 -81761055 + MIRb SINE MIR 91 242 -26 5 907 297 0 0 0 chr9 42316077 42316110 -81760062 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 5 907 258 160 0 0 chr9 42317162 42317212 -81758960 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 907 22 0 0 0 chr9 42317927 42317949 -81758223 + AT_rich Low_complexity Low_complexity 1 22 0 5 907 764 250 42 28 chr9 42318120 42318334 -81757838 - B4 SINE B4 -74 218 2 5 907 3651 259 49 45 chr9 42318440 42319523 -81756649 + Lx7 LINE L1 6277 7363 -333 5 907 21 0 0 0 chr9 42319541 42319562 -81756610 + AT_rich Low_complexity Low_complexity 1 21 0 5 907 265 255 64 0 chr9 42319628 42319722 -81756450 + Lx7 LINE L1 7611 7696 0 5 907 625 244 241 30 chr9 42323817 42323958 -81752214 - B4 SINE B4 -11 281 92 5 907 834 219 72 5 chr9 42323958 42324151 -81752021 - B3 SINE B2 -10 206 1 5 907 625 244 241 30 chr9 42324151 42324241 -81751931 - B4 SINE B4 -201 91 1 5 907 351 0 0 0 chr9 42325092 42325131 -81751041 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 907 261 0 0 0 chr9 42325397 42325426 -81750746 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 907 220 258 10 70 chr9 42326018 42326118 -81750054 + G-rich Low_complexity Low_complexity 1 94 0 5 907 180 0 0 0 chr9 42326842 42326862 -81749310 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 907 501 205 0 0 chr9 42327664 42327776 -81748396 + (CA)n Simple_repeat Simple_repeat 1 112 0 5 907 201 74 0 0 chr9 42328239 42328266 -81747906 + (G)n Simple_repeat Simple_repeat 1 27 0 5 907 462 36 0 0 chr9 42328309 42328365 -81747807 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 907 207 100 0 0 chr9 42328428 42328458 -81747714 + (A)n Simple_repeat Simple_repeat 1 30 0 5 907 568 274 20 31 chr9 42329957 42330153 -81746019 - MER46C DNA MER2_type -1 337 144 5 907 206 182 23 0 chr9 42330277 42330321 -81745851 + (TTA)n Simple_repeat Simple_repeat 3 47 0 5 907 345 47 0 0 chr9 42331927 42331970 -81744202 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 5 907 476 315 54 23 chr9 42333379 42333509 -81742663 - RSINE1 SINE B4 -30 135 2 5 907 2120 139 47 9 chr9 42333606 42333947 -81742225 + ORR1B1 LTR MaLR 41 394 0 5 907 1282 262 108 14 chr9 42335283 42335709 -81740463 - ORSL-2b DNA Tip100 -1 507 42 5 113 180 398 112 12 chr9 42336042 42336291 -81739881 + L2c LINE L2 2561 2834 -585 5 908 201 311 49 0 chr9 42336289 42336350 -81739822 + L2c LINE L2 2979 3042 -345 5 908 609 257 29 14 chr9 42336369 42336507 -81739665 + ORR1E LTR MaLR 4 143 -216 5 908 354 276 36 71 chr9 42336628 42336639 -81739533 - CYRA11_Mm Unknown Y-chromosome -295 322 252 5 908 837 161 0 20 chr9 42336639 42336785 -81739387 + URR1B DNA MER1_type 83 225 0 5 908 354 276 36 71 chr9 42336785 42336796 -81739376 - CYRA11_Mm Unknown Y-chromosome -295 251 161 5 908 250 298 25 58 chr9 42336819 42336940 -81739232 + ORR1E LTR MaLR 263 379 0 5 908 432 0 0 0 chr9 42336948 42336996 -81739176 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 908 396 0 0 0 chr9 42336996 42337039 -81739133 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 908 330 338 138 53 chr9 42337302 42337527 -81738645 + B4A SINE B4 45 288 -4 5 908 389 54 18 0 chr9 42337562 42337618 -81738554 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 908 1120 67 0 0 chr9 42337654 42337789 -81738383 + B1_Mus1 SINE Alu 1 135 -13 5 908 195 349 0 0 chr9 42339128 42339194 -81736978 - L2a LINE L2 -12 3414 3349 5 908 189 353 57 105 chr9 42339757 42339966 -81736206 - MIRb SINE MIR 0 268 70 5 908 207 0 0 0 chr9 42340892 42340915 -81735257 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 908 203 133 0 22 chr9 42342104 42342150 -81734022 + G-rich Low_complexity Low_complexity 4 48 0 5 908 180 0 0 0 chr9 42342757 42342777 -81733395 + (T)n Simple_repeat Simple_repeat 1 20 0 5 908 224 293 112 43 chr9 42343670 42343819 -81732353 - MIR SINE MIR -78 184 31 5 908 227 279 44 0 chr9 42344147 42344215 -81731957 - BLACKJACK DNA AcHobo -1 2943 2873 5 908 213 224 0 0 chr9 42344354 42344412 -81731760 + (TCCA)n Simple_repeat Simple_repeat 2 59 0 5 908 441 295 72 47 chr9 42344623 42344858 -81731314 - L2 LINE L2 -434 2985 2745 5 908 745 284 78 5 chr9 42344858 42345077 -81731095 + ORR1D2 LTR MaLR 1 235 -135 5 908 621 296 6 25 chr9 42346541 42346704 -81729468 - MER5A1 DNA MER1_type -1 165 6 5 908 453 358 35 13 chr9 42347604 42347833 -81728339 + Helitron2Na_Mam RC Helitron? 86 319 -5 5 908 1231 231 46 42 chr9 42348881 42349166 -81727006 + B4A SINE B4 5 290 -2 5 908 900 168 0 0 chr9 42349179 42349496 -81726676 + (CA)n Simple_repeat Simple_repeat 1 317 0 5 908 683 153 18 9 chr9 42349498 42349610 -81726562 + B1_Mus1 SINE Alu 36 148 0 5 908 696 24 0 0 chr9 42349616 42349698 -81726474 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 5 908 300 27 0 0 chr9 42349718 42349755 -81726417 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 908 745 269 40 82 chr9 42351081 42351385 -81724787 - B4A SINE B4 -1 291 1 5 908 336 317 73 34 chr9 42351419 42351625 -81724547 - MER113A DNA MER1_type -93 221 8 5 908 282 326 61 23 chr9 42353151 42353283 -81722889 + MIRc SINE MIR 122 258 -10 5 908 217 309 22 56 chr9 42353866 42353955 -81722217 + PB1D9 SINE Alu 26 111 -9 5 908 251 104 0 20 chr9 42355056 42355105 -81721067 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 908 283 164 40 14 chr9 42355175 42355249 -81720923 + C-rich Low_complexity Low_complexity 6 81 0 5 908 815 167 0 0 chr9 42355467 42355593 -81720579 - B1_Mus1 SINE Alu -20 128 3 5 908 184 283 22 0 chr9 42356273 42356319 -81719853 - MER5A DNA MER1_type -3 186 140 5 908 655 159 19 0 chr9 42356756 42356863 -81719309 - B1F SINE Alu 0 149 41 5 908 225 226 0 0 chr9 42356893 42356946 -81719226 + (TTG)n Simple_repeat Simple_repeat 2 54 0 5 908 201 317 173 0 chr9 42359039 42359143 -81717029 - MIRc SINE MIR -114 154 33 5 908 1411 161 0 9 chr9 42359452 42359671 -81716501 + URR1B DNA MER1_type 9 225 0 5 908 206 206 0 14 chr9 42360397 42360466 -81715706 + GA-rich Low_complexity Low_complexity 3 70 0 5 908 366 379 23 11 chr9 42362329 42362505 -81713667 + MIR SINE MIR 11 188 -74 5 908 457 254 95 80 chr9 42362878 42363015 -81713157 - B1F SINE Alu -1 148 10 5 908 224 269 77 77 chr9 42363601 42363718 -81712454 + MIR SINE MIR 21 137 -71 5 908 1613 166 124 23 chr9 42364105 42364302 -81711870 - ORR1C2 LTR MaLR -3 381 160 5 908 516 93 0 0 chr9 42364302 42364377 -81711795 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 908 399 125 0 0 chr9 42364377 42364449 -81711723 + (CAGA)n Simple_repeat Simple_repeat 2 73 0 5 908 1613 166 124 23 chr9 42364449 42364596 -81711576 - ORR1C2 LTR MaLR -225 159 2 5 908 1629 249 19 19 chr9 42365632 42366009 -81710163 + MTEa LTR MaLR 3 379 0 5 908 23 0 0 0 chr9 42366135 42366158 -81710014 + AT_rich Low_complexity Low_complexity 1 23 0 5 908 237 259 90 45 chr9 42366780 42366869 -81709303 - MIR SINE MIR -1 261 169 5 908 180 260 88 38 chr9 42367243 42367323 -81708849 - L2c LINE L2 -222 3165 3082 5 908 188 271 43 86 chr9 42367464 42367557 -81708615 - L2c LINE L2 -980 2439 2351 5 908 285 208 10 59 chr9 42367957 42368059 -81708113 + (TG)n Simple_repeat Simple_repeat 1 97 0 5 908 813 299 31 62 chr9 42368060 42368254 -81707918 - B4A SINE B4 0 292 105 5 908 1921 148 93 11 chr9 42368254 42368609 -81707563 - ORR1C2 LTR MaLR 0 384 1 5 908 813 299 31 62 chr9 42368609 42368703 -81707469 - B4A SINE B4 -188 104 13 5 908 310 208 0 0 chr9 42369268 42369331 -81706841 + L2b LINE L2 3320 3387 0 5 908 246 224 0 69 chr9 42369488 42369560 -81706612 - MLT2B5 LTR ERVL 0 555 489 5 908 189 74 0 0 chr9 42369607 42369634 -81706538 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 908 1813 188 62 3 chr9 42369673 42370026 -81706146 + ORR1C1 LTR MaLR 1 374 -4 5 908 655 159 29 0 chr9 42370029 42370199 -81705973 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 5 908 390 318 60 13 chr9 42370258 42370408 -81705764 - MLT2C2 LTR ERVL -184 280 124 5 908 643 264 44 96 chr9 42370382 42370532 -81705640 + MLT1C LTR MaLR 7 144 -323 5 908 1327 90 11 5 chr9 42370532 42370722 -81705450 + B2_Mm1a SINE B2 1 191 -2 5 908 643 264 44 96 chr9 42370722 42370843 -81705329 + MLT1C LTR MaLR 145 264 -203 5 908 238 298 34 42 chr9 42370848 42370967 -81705205 - MLT2C2 LTR ERVL -338 126 9 5 908 749 301 71 8 chr9 42371720 42371988 -81704184 - MLT1C LTR MaLR 0 467 183 5 908 1276 220 42 67 chr9 42372031 42372219 -81703953 + RMER17C LTR ERVK 1 183 -227 5 908 621 72 0 0 chr9 42372219 42372302 -81703870 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 908 1276 220 42 67 chr9 42372302 42372499 -81703673 + RMER17C LTR ERVK 184 379 -31 5 908 377 290 56 42 chr9 42372499 42372643 -81703529 - B1_Mur1 SINE Alu -2 147 2 5 908 1276 220 42 67 chr9 42372643 42372660 -81703512 + RMER17C LTR ERVK 380 394 -16 5 908 532 278 28 44 chr9 42372660 42372824 -81703348 - MLT1C LTR MaLR -281 186 9 5 908 411 248 31 39 chr9 42373338 42373468 -81702704 - MLT1C LTR MaLR -335 132 4 5 908 188 200 25 0 chr9 42373481 42373521 -81702651 + MIRb SINE MIR 219 259 -9 5 908 226 256 182 8 chr9 42374721 42374847 -81701325 - L3b LINE CR1 -120 362 215 5 908 342 198 126 47 chr9 42375416 42375543 -81700629 + ORR1E LTR MaLR 27 163 -196 5 908 319 302 20 80 chr9 42375553 42375704 -81700468 - L1MEg LINE L1 -5022 1062 921 6 908 872 281 32 54 chr9 42376409 42376687 -81699485 + B4 SINE B4 1 272 -20 6 908 447 19 0 0 chr9 42376693 42376745 -81699427 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 908 893 238 130 12 chr9 42376758 42377005 -81699167 + B4A SINE B4 1 276 -16 6 908 240 35 0 0 chr9 42377030 42377059 -81699113 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 908 324 0 0 0 chr9 42378369 42378405 -81697767 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 908 368 301 86 37 chr9 42379145 42379307 -81696865 + MIRb SINE MIR 67 236 -32 6 908 277 62 0 86 chr9 42379588 42379658 -81696514 + (CCCCG)n Simple_repeat Simple_repeat 1 64 0 6 908 252 77 0 0 chr9 42380295 42380334 -81695838 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 6 908 353 231 17 10 chr9 42380356 42380446 -81695726 - B1_Mur3 SINE Alu -16 133 40 6 908 528 205 0 51 chr9 42380725 42380843 -81695329 - PB1D10 SINE Alu 0 117 6 6 908 441 238 0 38 chr9 42380752 42380857 -81695315 - ID_B1 SINE B4 -48 176 76 6 908 713 212 0 22 chr9 42380880 42381015 -81695157 + B1_Mus2 SINE Alu 1 132 -15 6 908 288 0 0 0 chr9 42382090 42382122 -81694050 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 908 539 81 12 0 chr9 42382732 42382818 -81693354 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 908 327 243 93 0 chr9 42382846 42382946 -81693226 - RSINE1 SINE B4 -15 277 85 6 908 1791 208 36 43 chr9 42382946 42383364 -81692808 + MTD LTR MaLR 1 415 -4 6 908 565 294 57 76 chr9 42383367 42383577 -81692595 - B4A SINE B4 -84 208 3 6 908 386 374 0 0 chr9 42383968 42384099 -81692073 + MIR SINE MIR 100 230 -32 6 908 887 251 18 23 chr9 42384487 42384707 -81691465 - ID_B1 SINE B4 -4 220 2 6 908 311 279 147 68 chr9 42385573 42385838 -81690334 - B4A SINE B4 -6 286 1 6 908 312 320 96 25 chr9 42387539 42387696 -81688476 + MTEa LTR MaLR 212 379 0 6 908 340 358 73 17 chr9 42388178 42388357 -81687815 - MER5A DNA MER1_type 0 189 1 6 908 312 302 136 53 chr9 42388680 42388900 -81687272 + MIRb SINE MIR 6 242 -26 6 908 181 250 58 0 chr9 42389692 42389744 -81686428 - L2b LINE L2 -84 3291 3237 6 908 931 228 134 33 chr9 42390775 42391074 -81685098 - ORR1E LTR MaLR -30 329 1 6 908 213 254 97 14 chr9 42391350 42391422 -81684750 + MIR SINE MIR 92 169 -93 6 908 248 298 82 12 chr9 42392623 42392708 -81683464 - Tigger7 DNA MER2_type -8 2483 2393 6 908 1582 263 67 26 chr9 42392702 42393230 -81682942 - Tigger7 DNA MER2_type -1895 596 5 6 908 305 255 210 68 chr9 42393427 42393679 -81682493 + B4A SINE B4 5 292 0 6 908 282 95 0 0 chr9 42393691 42393733 -81682439 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 908 280 257 100 0 chr9 42393809 42393879 -81682293 + ID4_ SINE ID 6 82 -1 6 908 536 238 117 16 chr9 42394457 42394645 -81681527 + MER121 Unknown Unknown 170 376 -36 6 908 387 0 0 0 chr9 42396085 42396128 -81680044 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 908 340 244 157 16 chr9 42396280 42396429 -81679743 + MIR3 SINE MIR 27 192 -16 6 908 1710 156 72 111 chr9 42397420 42397809 -81678363 - ORR1D1 LTR MaLR 0 374 1 6 908 208 356 79 0 chr9 42398461 42398562 -81677610 + MIR SINE MIR 48 156 -106 6 908 304 205 147 16 chr9 42400038 42400110 -81676062 + L1MA4 LINE L1 5762 5839 -461 6 908 468 0 0 0 chr9 42400110 42400162 -81676010 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 908 304 205 147 16 chr9 42400162 42400218 -81675954 + L1MA4 LINE L1 5840 5907 -393 6 908 1210 54 0 20 chr9 42400249 42400387 -81675785 + B1_Mm SINE Alu 1 138 -9 6 908 936 108 0 0 chr9 42400387 42400526 -81675646 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 6 908 1210 54 0 20 chr9 42400526 42400537 -81675635 + B1_Mm SINE Alu 139 147 0 6 908 261 309 57 131 chr9 42400537 42400551 -81675621 + B4A SINE B4 87 113 -179 6 908 513 232 0 0 chr9 42400551 42400646 -81675526 + PB1D9 SINE Alu 17 111 -9 6 908 261 309 57 131 chr9 42400646 42400712 -81675460 + B4A SINE B4 114 248 -44 6 908 23 54 0 0 chr9 42402740 42402777 -81673395 + AT_rich Low_complexity Low_complexity 1 37 0 6 908 870 93 0 0 chr9 42403252 42403391 -81672781 + (CA)n Simple_repeat Simple_repeat 1 139 0 6 908 368 247 43 0 chr9 42404429 42404522 -81671650 + L2a LINE L2 3329 3425 -1 6 908 198 0 0 0 chr9 42404833 42404855 -81671317 + (T)n Simple_repeat Simple_repeat 1 22 0 6 908 310 325 12 0 chr9 42404883 42404963 -81671209 + Charlie19a DNA Charlie 8 88 -298 6 908 601 186 126 24 chr9 42406493 42406620 -81669552 + B1F SINE Alu 10 149 0 6 908 1129 286 3 7 chr9 42407226 42407518 -81668654 + B4A SINE B4 2 292 0 6 908 239 273 0 15 chr9 42407518 42407585 -81668587 + (CATA)n Simple_repeat Simple_repeat 3 68 0 6 908 237 299 134 0 chr9 42407609 42407676 -81668496 - PB1D7 SINE Alu -38 82 7 6 908 22 35 0 0 chr9 42407782 42407811 -81668361 + AT_rich Low_complexity Low_complexity 1 29 0 6 908 283 323 75 45 chr9 42410091 42410224 -81665948 - MER91A DNA Tip100 -1 195 59 6 908 436 272 47 22 chr9 42410269 42410452 -81665720 + MIR SINE MIR 44 227 -41 6 908 193 317 17 0 chr9 42410586 42410646 -81665526 + MER5A DNA MER1_type 103 163 -26 6 908 307 325 110 24 chr9 42410770 42410934 -81665238 - MER63A DNA AcHobo -20 190 13 6 908 488 252 18 9 chr9 42411144 42411256 -81664916 + B1F SINE Alu 28 140 -9 6 908 243 0 0 0 chr9 42411261 42411288 -81664884 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 908 198 0 0 0 chr9 42411569 42411591 -81664581 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 908 1307 62 0 0 chr9 42411591 42411751 -81664421 - B2_Mm2 SINE B2 -34 161 2 6 908 188 259 92 136 chr9 42412433 42412683 -81663489 + L2 LINE L2 2760 2998 -421 6 908 189 0 0 0 chr9 42412759 42412780 -81663392 + (T)n Simple_repeat Simple_repeat 1 21 0 6 908 385 226 26 62 chr9 42412780 42412893 -81663279 + MER58A DNA MER1_type 50 158 -66 6 908 249 415 14 7 chr9 42413043 42413186 -81662986 + L2a LINE L2 3280 3423 -3 6 908 375 310 36 52 chr9 42413197 42413391 -81662781 - MIR SINE MIR -66 196 6 6 908 261 336 17 50 chr9 42414771 42414890 -81661282 + MIR SINE MIR 20 134 -74 6 908 916 141 216 26 chr9 42415099 42415289 -81660883 + URR1A DNA MER1_type 1 226 0 6 908 213 178 89 0 chr9 42415606 42415651 -81660521 - MIRc SINE MIR -59 209 161 6 908 436 355 24 12 chr9 42415660 42415828 -81660344 + B4A SINE B4 120 289 -3 6 908 327 298 82 22 chr9 42416261 42416443 -81659729 + MER112 DNA MER1_type 1 193 -68 6 908 187 348 0 0 chr9 42416731 42416777 -81659395 - MIRc SINE MIR -113 155 110 6 908 360 337 130 0 chr9 42417377 42417561 -81658611 + L3 LINE CR1 4281 4488 -1 6 908 1155 316 173 12 chr9 42417735 42418289 -81657883 + MER82 DNA MER2_type 9 652 -1 6 908 784 160 0 19 chr9 42418666 42418748 -81657424 + polypyrimidine Low_complexity Low_complexity 76 156 0 6 908 1027 97 11 17 chr9 42418748 42418927 -81657245 + (TCC)n Simple_repeat Simple_repeat 3 180 0 6 908 784 160 0 19 chr9 42418927 42419003 -81657169 + polypyrimidine Low_complexity Low_complexity 1 75 0 6 908 344 280 137 42 chr9 42419028 42419196 -81656976 - B4A SINE B4 -90 202 19 6 908 557 269 43 0 chr9 42419218 42419359 -81656813 - B1F SINE Alu -2 147 1 6 908 186 324 39 65 chr9 42423508 42423663 -81652509 + L3 LINE CR1 4088 4238 -251 6 908 346 328 73 70 chr9 42423854 42424113 -81652059 + MIR SINE MIR 3 262 0 6 908 180 0 0 0 chr9 42424789 42424809 -81651363 + (A)n Simple_repeat Simple_repeat 1 20 0 6 908 219 36 0 0 chr9 42425241 42425269 -81650903 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 908 750 275 66 37 chr9 42425315 42425545 -81650627 - B4A SINE B4 -20 272 36 6 908 22 0 0 0 chr9 42426498 42426520 -81649652 + GC_rich Low_complexity Low_complexity 1 22 0 6 908 26 0 0 0 chr9 42426552 42426578 -81649594 + AT_rich Low_complexity Low_complexity 1 26 0 6 908 918 160 0 79 chr9 42426879 42427082 -81649090 - B2_Mm2 SINE B2 -7 188 2 6 908 205 80 0 91 chr9 42427386 42427441 -81648731 + (GGCTG)n Simple_repeat Simple_repeat 4 53 0 6 908 203 128 12 106 chr9 42427548 42427714 -81648458 + (GGCTG)n Simple_repeat Simple_repeat 1 150 0 6 908 313 296 158 36 chr9 42427779 42427975 -81648197 + L2a LINE L2 3207 3426 0 6 908 291 323 29 86 chr9 42428129 42428268 -81647904 + L2c LINE L2 3256 3386 -1 6 908 826 337 19 4 chr9 42428839 42429098 -81647074 + B4A SINE B4 1 263 -29 6 908 282 151 13 27 chr9 42431397 42431472 -81644700 + CT-rich Low_complexity Low_complexity 1 74 0 6 908 244 200 39 26 chr9 42431484 42431561 -81644611 + CT-rich Low_complexity Low_complexity 2 79 0 6 908 976 217 11 6 chr9 42431572 42431753 -81644419 - B3 SINE B2 -34 182 1 6 908 23 0 0 0 chr9 42432065 42432088 -81644084 + GC_rich Low_complexity Low_complexity 1 23 0 6 908 272 288 0 14 chr9 42432761 42432835 -81643337 + CT-rich Low_complexity Low_complexity 3 75 0 6 908 495 0 0 0 chr9 42433527 42433582 -81642590 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 908 207 0 0 0 chr9 42433582 42433604 -81642568 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 908 207 340 0 20 chr9 42433611 42433710 -81642462 + (TATATG)n Simple_repeat Simple_repeat 3 99 0 6 908 794 263 76 18 chr9 42433721 42433996 -81642176 - B4A SINE B4 -1 291 1 6 908 216 253 102 96 chr9 42437445 42437642 -81638530 - L2c LINE L2 -177 3210 3013 6 908 1086 64 0 41 chr9 42438003 42438150 -81638022 + B1_Mm SINE Alu 7 147 0 6 908 1210 55 0 0 chr9 42438182 42438327 -81637845 + B1_Mus2 SINE Alu 2 146 -1 7 908 248 0 31 0 chr9 42438327 42438359 -81637813 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 7 908 184 321 54 0 chr9 42438462 42438518 -81637654 - L2a LINE L2 -1 3425 3367 7 908 1174 249 63 124 chr9 42438715 42439095 -81637077 + MTE2b LTR MaLR 2 358 -21 7 908 247 309 55 36 chr9 42439985 42440123 -81636049 + MIR SINE MIR 10 152 -56 7 908 2009 208 35 14 chr9 42440137 42440566 -81635606 + Lx6 LINE L1 7012 7449 -11 7 908 468 256 0 24 chr9 42440612 42440736 -81635436 + RSINE1 SINE B4 5 125 -40 7 908 441 0 0 0 chr9 42441307 42441356 -81634816 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 908 359 301 44 13 chr9 42441528 42441686 -81634486 - MER103 DNA DNA -1 165 3 7 908 693 151 0 0 chr9 42442534 42442653 -81633519 + CT-rich Low_complexity Low_complexity 3 121 0 7 908 246 330 76 46 chr9 42443829 42444026 -81632146 - MIRc SINE MIR -42 226 24 7 908 184 321 68 19 chr9 42445397 42445559 -81630613 + L2b LINE L2 2459 2628 -791 7 908 265 318 11 0 chr9 42446664 42446752 -81629420 + L2b LINE L2 3287 3375 0 7 908 240 35 0 0 chr9 42448296 42448325 -81627847 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 908 481 318 165 45 chr9 42448398 42448797 -81627375 + MLT1E3 LTR MaLR 177 623 -1 7 908 773 317 21 28 chr9 42448988 42449274 -81626898 + B4 SINE B4 1 284 -8 7 908 636 48 0 0 chr9 42451445 42451529 -81624643 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 908 982 290 24 48 chr9 42451818 42452151 -81624021 + MTEb LTR MaLR 1 325 -54 7 908 1130 117 0 6 chr9 42452151 42452222 -81623950 + (TCCC)n Simple_repeat Simple_repeat 1 71 0 7 908 1246 73 6 6 chr9 42452222 42452402 -81623770 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 908 1130 117 0 6 chr9 42452402 42452510 -81623662 + (TCCC)n Simple_repeat Simple_repeat 1 108 0 7 908 254 164 0 18 chr9 42452512 42452562 -81623610 + CT-rich Low_complexity Low_complexity 9 58 0 7 908 1113 128 0 0 chr9 42452562 42452742 -81623430 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 7 908 273 254 0 0 chr9 42452748 42452811 -81623361 + MTEb LTR MaLR 315 377 -2 7 908 295 331 18 60 chr9 42453591 42453725 -81622447 - L2c LINE L2 0 3387 3233 7 908 511 286 82 15 chr9 42453727 42453922 -81622250 + B4A SINE B4 1 208 -84 7 908 278 294 38 38 chr9 42454781 42454912 -81621260 + MIRb SINE MIR 127 257 -11 7 908 716 258 54 5 chr9 42455780 42455983 -81620189 + MLT1J1 LTR MaLR 1 213 -231 7 908 710 258 158 41 chr9 42456097 42456388 -81619784 + MER2 DNA MER2_type 4 328 -17 7 908 1318 282 141 14 chr9 42456779 42457426 -81618746 + L1MB3 LINE L1 5446 6174 -9 7 908 533 249 148 42 chr9 42457459 42457769 -81618403 + L1MB5 LINE L1 5815 6157 -17 7 908 728 77 10 0 chr9 42457773 42457877 -81618295 + (GGGAGA)n Simple_repeat Simple_repeat 4 108 0 7 908 207 349 62 16 chr9 42459893 42460021 -81616151 - MIRc SINE MIR -131 137 4 7 908 438 327 7 0 chr9 42460510 42460663 -81615509 + L1ME3A LINE L1 6006 6159 -14 7 908 528 176 10 14 chr9 42460674 42460794 -81615378 + B1F1 SINE Alu 2 123 -26 7 908 911 112 0 7 chr9 42461581 42461716 -81614456 + ORR1B1 LTR MaLR 261 394 0 7 908 970 262 39 64 chr9 42461787 42462146 -81614026 + ORR1E LTR MaLR 9 358 -1 7 908 252 339 73 8 chr9 42462299 42462489 -81613683 + L1MD2 LINE L1 5846 6057 -302 7 908 701 246 15 55 chr9 42462588 42462790 -81613382 - B3A SINE B2 -3 195 2 7 908 220 167 48 0 chr9 42462830 42462872 -81613300 - B1_Mur4 SINE Alu -105 45 2 7 908 192 336 83 15 chr9 42462900 42463033 -81613139 - MIR SINE MIR -46 216 75 7 908 645 293 32 29 chr9 42465679 42465957 -81610215 + L1ME4a LINE L1 5619 5897 -227 7 908 381 218 0 0 chr9 42466397 42466521 -81609651 + (TG)n Simple_repeat Simple_repeat 2 125 0 7 908 645 194 0 0 chr9 42466536 42466711 -81609461 + (TG)n Simple_repeat Simple_repeat 2 176 0 7 909 268 274 92 28 chr9 42469266 42469375 -81606797 - MIRm SINE MIR -157 119 4 7 909 645 136 68 0 chr9 42469696 42469814 -81606358 + ORR1D1 LTR MaLR 1 126 -248 7 909 956 304 11 32 chr9 42471215 42471494 -81604678 - B4A SINE B4 -19 273 1 7 909 257 341 34 0 chr9 42471496 42471584 -81604588 - Tigger5 DNA MER2_type -2315 91 1 7 909 290 239 11 0 chr9 42472051 42472175 -81603997 + A-rich Low_complexity Low_complexity 1 125 0 7 909 300 339 31 16 chr9 42472191 42472203 -81603969 - RSINE1 SINE B4 -2 163 152 7 909 396 0 0 0 chr9 42472203 42472247 -81603925 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 909 300 339 31 16 chr9 42472247 42472363 -81603809 - RSINE1 SINE B4 -14 151 33 7 909 418 324 35 62 chr9 42472864 42473091 -81603081 + B4A SINE B4 1 221 -71 7 909 459 0 0 0 chr9 42473093 42473144 -81603028 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 909 405 229 24 0 chr9 42473149 42473232 -81602940 + RSINE1 SINE B4 12 96 -69 7 909 396 0 0 0 chr9 42473232 42473276 -81602896 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 909 709 248 67 10 chr9 42473300 42473508 -81602664 + ID_B1 SINE B4 4 223 -1 7 909 369 0 0 0 chr9 42474884 42474925 -81601247 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 909 884 269 84 8 chr9 42474941 42475192 -81600980 - B4A SINE B4 -22 270 1 7 909 299 44 22 0 chr9 42476115 42476160 -81600012 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 7 909 229 284 24 12 chr9 42476320 42476402 -81599770 + L3b LINE CR1 203 285 -197 7 909 470 260 33 49 chr9 42476819 42476998 -81599174 + MER3 DNA MER1_type 1 168 -41 7 909 356 302 9 0 chr9 42476998 42477104 -81599068 - PB1D7 SINE Alu -13 107 1 7 909 312 259 27 61 chr9 42477104 42477120 -81599052 + Charlie5 DNA MER1_type 133 145 -2479 7 909 251 304 149 9 chr9 42477224 42477337 -81598835 + MIRc SINE MIR 28 152 -56 7 909 243 310 112 39 chr9 42478040 42478218 -81597954 + MIRb SINE MIR 24 214 -54 7 909 665 24 12 0 chr9 42478992 42479075 -81597097 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 909 199 354 10 20 chr9 42480115 42480213 -81595959 + L3b LINE CR1 244 340 -142 7 909 342 0 0 0 chr9 42480594 42480632 -81595540 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 909 230 239 44 44 chr9 42482446 42482560 -81593612 + G-rich Low_complexity Low_complexity 5 118 0 7 909 350 180 20 20 chr9 42483919 42484021 -81592151 + GA-rich Low_complexity Low_complexity 4 105 0 7 909 408 71 0 0 chr9 42484290 42484346 -81591826 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 909 899 294 70 16 chr9 42484348 42484604 -81591568 - B4A SINE B4 -18 274 5 7 909 601 280 0 0 chr9 42485974 42486106 -81590066 - B3A SINE B2 -65 133 2 7 909 443 301 45 17 chr9 42486247 42486426 -81589746 - MIR SINE MIR -76 186 3 7 909 398 360 40 11 chr9 42486705 42486882 -81589290 + L1ME4a LINE L1 5730 5911 -213 7 909 496 171 7 7 chr9 42487513 42487654 -81588518 + (TG)n Simple_repeat Simple_repeat 1 141 0 7 909 189 0 0 0 chr9 42487656 42487677 -81588495 + (GA)n Simple_repeat Simple_repeat 1 21 0 7 909 189 0 0 0 chr9 42487677 42487697 -81588475 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 909 744 127 12 6 chr9 42487742 42487908 -81588264 + (TG)n Simple_repeat Simple_repeat 1 167 0 7 909 359 176 16 16 chr9 42487922 42488049 -81588123 + (TG)n Simple_repeat Simple_repeat 1 127 0 7 909 749 261 157 0 chr9 42488139 42488445 -81587727 + Charlie4a DNA MER1_type 93 446 -62 7 909 348 313 10 0 chr9 42489021 42489120 -81587052 + MER46C DNA MER2_type 222 321 -17 7 909 180 290 211 21 chr9 42489158 42489253 -81586919 + L2c LINE L2 3263 3375 -12 7 909 306 0 0 0 chr9 42490420 42490454 -81585718 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 909 663 243 11 73 chr9 42490470 42490661 -81585511 - B4 SINE B4 -20 272 94 7 909 277 235 44 118 chr9 42493295 42493430 -81582742 + MLT1M LTR MaLR 138 262 -410 7 909 1430 299 68 19 chr9 42493449 42493964 -81582208 + Lx8 LINE L1 6934 7473 0 7 909 272 340 40 20 chr9 42494017 42494116 -81582056 + L2b LINE L2 3255 3355 -20 7 909 201 74 0 0 chr9 42494284 42494311 -81581861 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 909 278 315 98 70 chr9 42494662 42494918 -81581254 + ORR1E LTR MaLR 97 359 0 7 909 350 378 0 0 chr9 42495225 42495368 -81580804 - MIRc SINE MIR -24 244 102 7 909 437 228 11 0 chr9 42495463 42495555 -81580617 + B1F SINE Alu 46 138 -11 7 909 302 288 12 0 chr9 42495576 42495656 -81580516 + GA-rich Low_complexity Low_complexity 2 82 0 7 909 450 114 0 0 chr9 42495750 42495820 -81580352 + (TGAA)n Simple_repeat Simple_repeat 1 70 0 7 909 214 274 32 169 chr9 42496915 42497069 -81579103 + MIRb SINE MIR 127 259 -9 7 909 390 42 0 0 chr9 42497117 42497165 -81579007 + (TTTTA)n Simple_repeat Simple_repeat 4 51 0 7 909 252 86 0 0 chr9 42497198 42497233 -81578939 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 7 909 536 305 284 31 chr9 42497619 42498047 -81578125 + L1MB5 LINE L1 5649 6184 0 7 909 3275 35 2 0 chr9 42498064 42498458 -81577714 + MTA_Mm LTR MaLR 2 396 0 7 909 215 205 0 0 chr9 42499955 42499994 -81576178 + CT-rich Low_complexity Low_complexity 3 41 0 7 909 863 309 39 45 chr9 42500436 42500771 -81575401 + MLT1A LTR MaLR 42 374 0 1 909 342 0 0 0 chr9 42503265 42503303 -81572869 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 909 381 288 153 26 chr9 42503661 42503850 -81572322 - MIR SINE MIR -1 261 49 3 909 199 301 96 0 chr9 42504105 42504188 -81571984 + L2 LINE L2 2349 2439 -980 4 909 1213 42 0 0 chr9 42504188 42504330 -81571842 + B1_Mus1 SINE Alu 1 142 -6 5 909 243 0 0 0 chr9 42504334 42504361 -81571811 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 6 909 511 254 46 72 chr9 42504393 42504480 -81571692 + RSINE1 SINE B4 2 80 -85 7 909 1351 196 153 15 chr9 42504480 42504806 -81571366 - ORR1D1 LTR MaLR 0 374 4 8 909 511 254 46 72 chr9 42504806 42504871 -81571301 + RSINE1 SINE B4 81 150 -15 7 909 441 0 0 0 chr9 42504882 42504931 -81571241 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 909 576 248 21 14 chr9 42504989 42505132 -81571040 + B1F SINE Alu 1 144 -5 1 909 195 42 0 0 chr9 42505136 42505160 -81571012 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 1 909 227 31 31 0 chr9 42505333 42505365 -81570807 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 909 270 0 0 0 chr9 42505365 42505395 -81570777 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 909 534 301 132 18 chr9 42505990 42506339 -81569833 + L1MC LINE L1 4981 5392 -952 1 909 486 0 0 0 chr9 42506339 42506393 -81569779 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 909 554 244 0 0 chr9 42506393 42506512 -81569660 + L1MC LINE L1 5393 5511 -668 1 909 1222 227 49 25 chr9 42506640 42506924 -81569248 + B4 SINE B4 2 292 0 1 909 183 114 0 0 chr9 42507465 42507500 -81568672 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 1 909 387 0 0 0 chr9 42509695 42509738 -81566434 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 909 1033 221 142 38 chr9 42511992 42512305 -81563867 + ORR1E LTR MaLR 6 407 -12 1 909 205 214 0 23 chr9 42512653 42512696 -81563476 + (CAT)n Simple_repeat Simple_repeat 2 43 0 2 909 223 257 28 14 chr9 42513670 42513741 -81562431 + GA-rich Low_complexity Low_complexity 1 72 0 2 909 473 280 30 65 chr9 42514013 42514181 -81561991 - MER20 DNA MER1_type -57 162 1 2 909 190 306 93 55 chr9 42514205 42514388 -81561784 + L2 LINE L2 2732 2921 -498 2 909 192 353 0 0 chr9 42514361 42514412 -81561760 - L2b LINE L2 -30 3345 3295 2 909 212 152 43 0 chr9 42514865 42514911 -81561261 + (GTTTG)n Simple_repeat Simple_repeat 3 50 0 2 909 927 281 26 85 chr9 42515287 42515594 -81560578 + B4A SINE B4 4 292 0 2 909 264 122 0 0 chr9 42515605 42515646 -81560526 + (CATA)n Simple_repeat Simple_repeat 1 41 0 2 909 1695 260 70 34 chr9 42515655 42515805 -81560367 + L1MB3 LINE L1 5476 5619 -564 2 909 1335 219 85 20 chr9 42515805 42516159 -81560013 + MTE2a LTR MaLR 3 379 0 2 909 1695 260 70 34 chr9 42516159 42516650 -81559522 + L1MB3 LINE L1 5620 6140 -43 2 909 1277 234 32 25 chr9 42516661 42516942 -81559230 + B4 SINE B4 10 292 0 3 909 333 176 0 0 chr9 42516942 42517016 -81559156 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 909 372 338 73 14 chr9 42517140 42517359 -81558813 - MIRc SINE MIR -28 240 9 3 909 181 293 69 58 chr9 42517984 42518071 -81558101 + L2 LINE L2 20 107 -3312 3 909 245 291 57 99 chr9 42518950 42519091 -81557081 - L2c LINE L2 -37 3389 3248 3 909 507 248 0 25 chr9 42519601 42519721 -81556451 + PB1D10 SINE Alu 1 117 0 3 909 453 174 56 0 chr9 42519857 42520018 -81556154 + CT-rich Low_complexity Low_complexity 1 170 0 3 909 248 238 48 0 chr9 42520330 42520393 -81555779 + L2b LINE L2 3291 3356 -19 3 909 483 334 100 69 chr9 42520772 42521092 -81555080 + MLT1F2 LTR MaLR 12 368 -192 3 909 1197 0 0 0 chr9 42521092 42521225 -81554947 + (CCCCAG)n Simple_repeat Simple_repeat 6 138 0 3 909 483 364 57 54 chr9 42521225 42521425 -81554747 + MLT1F2 LTR MaLR 369 559 -1 3 909 319 282 44 110 chr9 42522033 42522195 -81553977 + MIRm SINE MIR 3 148 -60 4 909 222 250 41 14 chr9 42522348 42522421 -81553751 - MIRc SINE MIR -34 234 160 4 909 948 154 0 7 chr9 42522763 42522913 -81553259 + B1_Mur3 SINE Alu 1 149 0 4 909 360 111 0 0 chr9 42522918 42522972 -81553200 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 4 909 1263 94 0 0 chr9 42522979 42523159 -81553013 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 4 909 350 250 62 0 chr9 42523485 42523565 -81552607 - 5S rRNA rRNA -33 88 4 4 909 246 225 0 0 chr9 42523945 42524025 -81552147 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 909 289 318 32 44 chr9 42524026 42524276 -81551896 - RMER12 LTR ERVK -334 988 742 4 909 549 353 54 22 chr9 42524368 42524684 -81551488 - MLT-int LTR MaLR -938 797 472 4 909 291 320 20 0 chr9 42524702 42524802 -81551370 + (CATG)n Simple_repeat Simple_repeat 3 104 0 4 909 843 314 114 24 chr9 42524825 42525236 -81550936 - MLT-int LTR MaLR -1269 466 19 4 909 852 269 30 5 chr9 42525273 42525471 -81550701 + B3 SINE B2 14 216 0 5 909 671 318 23 84 chr9 42525561 42525712 -81550460 - MLT1A LTR MaLR -90 284 146 5 909 1326 88 33 16 chr9 42525712 42525896 -81550276 - B2_Mm2 SINE B2 -7 188 2 5 909 671 318 23 84 chr9 42525896 42526043 -81550129 - MLT1A LTR MaLR -229 145 4 5 909 1064 40 0 0 chr9 42526086 42526212 -81549960 - B1_Mm SINE Alu -10 137 12 5 909 246 200 0 43 chr9 42527166 42527213 -81548959 + MER58B DNA MER1_type 1 45 -296 5 909 1146 103 0 0 chr9 42527366 42527592 -81548580 + (TG)n Simple_repeat Simple_repeat 1 226 0 5 909 612 309 39 24 chr9 42527592 42527798 -81548374 - B4A SINE B4 -10 282 74 5 909 1033 230 45 16 chr9 42527861 42528108 -81548064 + MER58B DNA MER1_type 86 339 -2 5 909 254 369 156 24 chr9 42528169 42528547 -81547625 + MLT1K LTR MaLR 162 589 -6 5 909 232 287 67 92 chr9 42531187 42531306 -81544866 - LTR39 LTR ERV1 -342 441 326 5 909 227 267 21 72 chr9 42531563 42531660 -81544512 - YREP_Mm Unknown Unknown -1504 308 217 5 909 502 214 0 58 chr9 42531579 42531683 -81544489 + PB1D7 SINE Alu 23 120 0 6 909 285 29 0 0 chr9 42531690 42531724 -81544448 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 909 396 0 0 0 chr9 42531724 42531767 -81544405 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 909 304 263 187 14 chr9 42531898 42532037 -81544135 + MIRb SINE MIR 64 226 -42 6 909 331 277 116 16 chr9 42532289 42532410 -81543762 + L2b LINE L2 3242 3374 -1 6 909 259 182 0 0 chr9 42532428 42532472 -81543700 - MamRep434 DNA TcMar -382 44 1 6 909 688 233 60 8 chr9 42532520 42532774 -81543398 + L1MB7 LINE L1 5171 5436 -748 6 909 683 318 56 48 chr9 42532786 42533159 -81543013 + L1MB7 LINE L1 5515 5890 -294 6 909 871 239 112 5 chr9 42533201 42533415 -81542757 + MTE2a LTR MaLR 90 326 -53 6 909 1079 72 0 7 chr9 42533472 42533627 -81542545 + (TA)n Simple_repeat Simple_repeat 2 155 0 6 909 257 219 0 72 chr9 42533627 42533696 -81542476 + MTE2a LTR MaLR 314 377 -2 6 909 248 335 25 41 chr9 42533696 42533892 -81542280 + L1MB7 LINE L1 5929 6121 -63 6 909 588 243 46 33 chr9 42533958 42534111 -81542061 + RSINE1 SINE B4 11 165 0 6 909 244 289 0 50 chr9 42534111 42534191 -81541981 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 7 909 221 139 23 0 chr9 42534197 42534240 -81541932 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 909 260 336 160 0 chr9 42534543 42534662 -81541510 - B1F1 SINE Alu -10 139 2 7 909 239 350 9 55 chr9 42534695 42534804 -81541368 - MIR SINE MIR -66 142 39 7 909 228 279 103 28 chr9 42535783 42535890 -81540282 + MIRc SINE MIR 21 135 -133 7 909 190 338 91 86 chr9 42537045 42537220 -81538952 + MIRb SINE MIR 52 227 -41 7 909 1051 230 9 5 chr9 42537540 42537750 -81538422 - B3 SINE B2 -5 211 1 7 909 549 0 0 0 chr9 42537764 42537825 -81538347 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 909 733 284 118 16 chr9 42537832 42538086 -81538086 - B4 SINE B4 -12 280 1 7 909 219 36 0 0 chr9 42539608 42539636 -81536536 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 7 909 577 294 93 5 chr9 42540317 42540522 -81535650 + ID_B1 SINE B4 2 224 0 8 909 385 299 48 27 chr9 42541252 42541417 -81534755 - MIRb SINE MIR -69 199 20 8 909 381 75 0 0 chr9 42541436 42541489 -81534683 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 909 249 263 105 0 chr9 42541500 42541557 -81534615 - ID4 SINE ID -19 64 2 8 909 601 135 17 42 chr9 42542715 42542956 -81533216 + (TG)n Simple_repeat Simple_repeat 1 234 0 8 909 222 156 0 45 chr9 42542979 42543046 -81533126 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 909 305 96 0 71 chr9 42543078 42543121 -81533051 - HAL1-3A_ME LINE L1 -840 2018 1979 8 909 533 242 17 101 chr9 42543121 42543300 -81532872 - RSINE1 SINE B4 0 165 2 8 909 305 96 0 71 chr9 42543300 42543312 -81532860 - HAL1-3A_ME LINE L1 -880 1978 1967 8 909 366 235 0 0 chr9 42543508 42543576 -81532596 + ID4 SINE ID 5 72 -11 8 909 393 39 0 0 chr9 42545594 42545645 -81530527 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 909 297 0 0 0 chr9 42545650 42545683 -81530489 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 909 237 132 0 0 chr9 42547299 42547337 -81528835 + (CCA)n Simple_repeat Simple_repeat 1 38 0 9 909 232 331 26 52 chr9 42547578 42547731 -81528441 + L2 LINE L2 2179 2327 -1092 9 909 201 74 0 0 chr9 42548200 42548227 -81527945 + (A)n Simple_repeat Simple_repeat 1 27 0 9 909 541 199 60 15 chr9 42548327 42548460 -81527712 - L1MC5 LINE L1 -855 7106 6968 9 909 228 269 29 15 chr9 42548572 42548640 -81527532 - L1MC5 LINE L1 -1033 6962 6894 9 909 395 222 61 18 chr9 42548658 42548887 -81527285 - L1MC5 LINE L1 -1192 6850 6612 9 909 560 211 23 11 chr9 42548895 42549072 -81527100 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 9 909 307 244 22 34 chr9 42549118 42549296 -81526876 + (TATG)n Simple_repeat Simple_repeat 4 179 0 9 909 544 233 0 22 chr9 42549309 42549493 -81526679 + (TATG)n Simple_repeat Simple_repeat 1 180 0 9 909 405 234 18 5 chr9 42549493 42549723 -81526449 + (TG)n Simple_repeat Simple_repeat 1 233 0 9 909 321 351 68 41 chr9 42550091 42550531 -81525641 - L1MC4 LINE L1 -4436 1779 1328 9 909 389 244 30 68 chr9 42550534 42550666 -81525506 - B1_Mus2 SINE Alu -20 127 1 9 909 665 177 146 0 chr9 42550549 42550707 -81525465 - ID_B1 SINE B4 -3 221 41 9 909 2405 179 36 74 chr9 42550929 42551350 -81524822 - RCHARR1 DNA MER1_type -71 903 468 1 909 714 174 0 14 chr9 42551350 42551496 -81524676 + Lx6 LINE L1 7311 7454 -6 1 909 2405 179 36 74 chr9 42551496 42551658 -81524514 - RCHARR1 DNA MER1_type -507 467 342 1 909 423 0 0 0 chr9 42551664 42551711 -81524461 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 909 606 267 79 53 chr9 42551760 42552025 -81524147 + B4A SINE B4 21 292 0 1 909 268 232 35 35 chr9 42552037 42552122 -81524050 - RCHARR1 DNA MER1_type -869 105 21 1 909 404 311 150 16 chr9 42552235 42552428 -81523744 - B4A SINE B4 -16 276 58 1 909 371 245 180 20 chr9 42552965 42553065 -81523107 - PB1D10 SINE Alu -1 116 1 1 909 312 278 47 58 chr9 42553177 42553368 -81522804 + RMER17A LTR ERVK 222 410 -341 1 909 526 198 138 0 chr9 42553368 42553484 -81522688 - B1_Mus1 SINE Alu -14 134 3 1 909 188 279 256 0 chr9 42554083 42554212 -81521960 + L2 LINE L2 2390 2551 -868 1 909 216 0 0 0 chr9 42554642 42554666 -81521506 + (T)n Simple_repeat Simple_repeat 1 24 0 1 909 1180 316 67 85 chr9 42555073 42555556 -81520616 - MER20B DNA MER1_type 0 783 282 1 909 730 154 225 0 chr9 42555556 42555725 -81520447 + B3 SINE B2 1 207 -9 1 909 1180 316 67 85 chr9 42555725 42555762 -81520410 - MER20B DNA MER1_type -502 281 250 1 909 986 112 48 43 chr9 42555762 42555948 -81520224 + B2_Mm2 SINE B2 2 188 -7 1 909 1180 316 67 85 chr9 42555948 42556190 -81519982 - MER20B DNA MER1_type -534 249 35 1 909 360 340 37 5 chr9 42556231 42556420 -81519752 + L1ME1 LINE L1 5723 5917 -262 1 909 3273 41 18 8 chr9 42556718 42557110 -81519062 + MTA_Mm LTR MaLR 1 396 0 1 909 326 309 114 7 chr9 42557645 42557785 -81518387 + MIR SINE MIR 80 234 -28 1 909 716 307 80 33 chr9 42557812 42558286 -81517886 + MER74A LTR ERVL 3 532 -26 1 909 987 118 0 3 chr9 42558793 42559092 -81517080 + (TG)n Simple_repeat Simple_repeat 1 298 0 1 909 252 268 18 0 chr9 42559116 42559172 -81517000 - B4A SINE B4 -5 287 231 1 909 647 262 113 64 chr9 42559186 42559390 -81516782 - B3A SINE B2 -1 215 2 1 909 686 320 5 10 chr9 42559390 42559593 -81516579 - B4A SINE B4 -89 203 2 1 909 204 214 0 0 chr9 42560236 42560292 -81515880 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 909 567 330 57 0 chr9 42560378 42560590 -81515582 - Tigger7 DNA MER2_type 0 2491 2268 1 909 714 246 98 27 chr9 42560844 42561028 -81515144 + B4 SINE B4 3 199 -93 1 909 363 23 0 0 chr9 42561028 42561072 -81515100 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 909 212 298 0 0 chr9 42561486 42561533 -81514639 - MIRb SINE MIR -174 94 48 1 909 23 33 0 0 chr9 42561774 42561804 -81514368 + AT_rich Low_complexity Low_complexity 1 30 0 1 909 240 59 0 0 chr9 42561877 42561911 -81514261 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 909 1400 70 37 0 chr9 42561975 42562162 -81514010 - B2_Mm2 SINE B2 0 195 2 1 909 191 191 121 45 chr9 42562360 42562426 -81513746 + MIR3 SINE MIR 105 175 -33 1 909 183 156 0 0 chr9 42562952 42562984 -81513188 + GA-rich Low_complexity Low_complexity 4 35 0 1 909 688 125 19 39 chr9 42563306 42563623 -81512549 + (CAGAGA)n Simple_repeat Simple_repeat 1 310 0 1 909 185 348 91 74 chr9 42563646 42563767 -81512405 - MIRc SINE MIR -58 210 88 1 909 187 376 8 93 chr9 42564576 42564705 -81511467 + L2c LINE L2 3269 3386 -1 1 909 352 179 149 35 chr9 42564801 42564888 -81511284 + PB1D10 SINE Alu 20 116 -1 1 909 714 178 15 44 chr9 42566367 42566502 -81509670 - B1_Mur4 SINE Alu -9 141 11 1 909 285 298 22 152 chr9 42566377 42566607 -81509565 - MT2B LTR ERVL -325 276 77 1 909 258 286 0 0 chr9 42566611 42566674 -81509498 + L2b LINE L2 3294 3356 -19 1 909 430 253 304 18 chr9 42566704 42566926 -81509246 + B4 SINE B4 7 292 0 1 909 333 0 0 0 chr9 42566998 42567035 -81509137 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 1 909 298 239 230 11 chr9 42567035 42567149 -81509023 + B1_Mus1 SINE Alu 1 127 -21 1 909 335 235 71 0 chr9 42567194 42567279 -81508893 + ORR1E LTR MaLR 7 97 -262 1 909 207 346 53 66 chr9 42567785 42567963 -81508209 + MIRc SINE MIR 29 209 -59 1 909 239 281 149 61 chr9 42568577 42568725 -81507447 + L3 LINE CR1 3699 3859 -630 1 909 421 292 43 92 chr9 42568754 42568939 -81507233 + B4A SINE B4 2 177 -115 1 909 276 77 0 0 chr9 42568979 42569018 -81507154 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 909 224 366 11 0 chr9 42569792 42569885 -81506287 + L2a LINE L2 3295 3388 -38 1 909 382 230 0 0 chr9 42571376 42571450 -81504722 - MIR3 SINE MIR -5 203 130 1 909 816 241 60 21 chr9 42571827 42572060 -81504112 - B4 SINE B4 -48 244 3 1 909 342 0 0 0 chr9 42572432 42572470 -81503702 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 909 240 207 86 133 chr9 42572621 42572749 -81503423 + MER5A1 DNA MER1_type 13 134 -32 1 909 249 278 30 67 chr9 42572658 42572793 -81503379 - MER5A1 DNA MER1_type -36 130 1 1 909 347 231 221 8 chr9 42573800 42573922 -81502250 - RMER30 DNA MER1_type -47 155 8 1 909 1023 260 64 32 chr9 42573926 42574208 -81501964 + B4 SINE B4 2 292 0 1 909 22 35 0 0 chr9 42574234 42574263 -81501909 + AT_rich Low_complexity Low_complexity 1 29 0 1 909 365 341 115 58 chr9 42574392 42574653 -81501519 + MLT1G1 LTR MaLR 301 576 -3 1 909 198 143 0 0 chr9 42575964 42575999 -81500173 + (CATG)n Simple_repeat Simple_repeat 2 36 0 1 909 470 319 52 43 chr9 42576000 42576210 -81499962 - Charlie12 DNA MER1_type -2654 219 8 1 909 629 284 16 47 chr9 42576025 42576217 -81499955 + RMER30 DNA MER1_type 17 202 0 1 909 333 246 82 60 chr9 42576667 42576801 -81499371 - MER112 DNA MER1_type -124 137 1 1 909 593 139 0 8 chr9 42576807 42576930 -81499242 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 1 909 196 125 0 77 chr9 42577010 42577062 -81499110 + (CATG)n Simple_repeat Simple_repeat 1 48 0 1 909 1118 273 39 32 chr9 42577079 42577359 -81498813 - B4A SINE B4 -2 290 9 1 909 297 89 0 0 chr9 42577359 42577404 -81498768 + (ATTG)n Simple_repeat Simple_repeat 2 46 0 1 909 428 288 70 70 chr9 42577441 42577583 -81498589 - RSINE1 SINE B4 -20 145 4 1 909 1798 282 60 32 chr9 42577657 42578642 -81497530 - L1MB5 LINE L1 -57 6117 5104 1 909 324 0 0 0 chr9 42578643 42578679 -81497493 + (A)n Simple_repeat Simple_repeat 1 36 0 1 909 1257 268 41 26 chr9 42578972 42579317 -81496855 + MTEb LTR MaLR 15 364 -15 1 909 396 277 89 0 chr9 42579370 42579572 -81496600 + L1M4 LINE L1 4265 4484 -1656 1 909 453 294 10 2 chr9 42579583 42579699 -81496473 + PB1D7 SINE Alu 6 119 -1 1 909 241 314 95 0 chr9 42579704 42579809 -81496363 + L1M4 LINE L1 4494 4608 -1538 1 909 921 252 75 15 chr9 42579814 42580080 -81496092 + B4A SINE B4 1 282 -10 1 909 354 45 0 0 chr9 42580084 42580128 -81496044 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 909 1331 96 11 0 chr9 42580156 42580333 -81495839 + B2_Mm1t SINE B2 1 179 -14 1 909 328 86 308 34 chr9 42580398 42580515 -81495657 + B2_Mm2 SINE B2 47 195 0 1 909 398 276 174 16 chr9 42580517 42580775 -81495397 + L1M4 LINE L1 4624 4922 -1224 1 909 359 168 98 0 chr9 42580982 42581125 -81495047 + (CACAC)n Simple_repeat Simple_repeat 5 161 0 1 909 184 211 0 0 chr9 42581540 42581578 -81494594 - L2c LINE L2 -172 3215 3178 1 909 252 331 70 0 chr9 42581690 42581832 -81494340 - MIRb SINE MIR -44 224 73 1 909 302 176 74 80 chr9 42584355 42584483 -81491689 + MIR3 SINE MIR 78 200 -8 1 909 742 226 50 6 chr9 42585471 42585631 -81490541 - RMER30 DNA MER1_type -2 200 34 1 909 3396 152 16 18 chr9 42586481 42587051 -81489121 + RLTR1D LTR ERV1 37 605 0 1 909 322 316 51 32 chr9 42589015 42589187 -81486985 + MIRb SINE MIR 2 170 -98 1 909 256 328 80 53 chr9 42589514 42589778 -81486394 + L3b LINE CR1 1 271 -211 1 909 446 225 76 91 chr9 42590239 42590258 -81485914 - B3A SINE B2 -12 186 168 1 909 743 92 8 0 chr9 42590258 42590389 -81485783 + (GA)n Simple_repeat Simple_repeat 1 132 0 1 909 446 225 76 91 chr9 42590389 42590501 -81485671 - B3A SINE B2 -31 167 57 1 909 1180 206 28 16 chr9 42590613 42590865 -81485307 + MER2 DNA MER2_type 82 336 -9 1 909 689 190 284 6 chr9 42591050 42591219 -81484953 - B3 SINE B2 0 216 1 1 909 296 336 80 102 chr9 42591377 42591865 -81484307 - L2c LINE L2 0 3387 2911 1 909 594 191 0 0 chr9 42592286 42592412 -81483760 + (CA)n Simple_repeat Simple_repeat 2 127 0 1 909 265 253 12 24 chr9 42592858 42592943 -81483229 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 909 271 152 43 26 chr9 42592982 42593097 -81483075 + (TG)n Simple_repeat Simple_repeat 1 117 0 1 909 422 307 20 0 chr9 42593937 42594087 -81482085 + L1MEg1 LINE L1 12 164 -6071 1 909 382 291 190 23 chr9 42594446 42594836 -81481336 + L1MEg1 LINE L1 506 781 -5454 1 909 378 61 0 0 chr9 42594988 42595037 -81481135 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 909 848 307 35 25 chr9 42595057 42595341 -81480831 - B4 SINE B4 -4 288 2 1 909 204 434 66 0 chr9 42595438 42595604 -81480568 + MIRc SINE MIR 91 267 -1 1 909 205 217 22 0 chr9 42596627 42596673 -81479499 + GA-rich Low_complexity Low_complexity 2 48 0 1 909 773 127 76 38 chr9 42597520 42597651 -81478521 + B1_Mus1 SINE Alu 3 138 -10 1 909 198 0 0 0 chr9 42597651 42597673 -81478499 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 909 354 354 76 65 chr9 42597780 42598134 -81478038 + L2 LINE L2 2234 2591 -828 1 909 219 205 0 0 chr9 42598235 42598274 -81477898 + RSINE1 SINE B4 3 41 -124 1 910 947 175 191 0 chr9 42598881 42599070 -81477102 + URR1B DNA MER1_type 1 225 0 1 910 653 168 127 22 chr9 42599148 42599282 -81476890 - B1_Mur3 SINE Alu -1 148 1 1 910 214 254 17 0 chr9 42599758 42599817 -81476355 + CT-rich Low_complexity Low_complexity 6 65 0 1 910 280 338 147 19 chr9 42601922 42602133 -81474039 + MIRb SINE MIR 25 262 -6 1 910 290 206 14 0 chr9 42602609 42602682 -81473490 + CT-rich Low_complexity Low_complexity 1 74 0 2 910 610 356 119 49 chr9 42604527 42604601 -81471571 + MLT1E2 LTR MaLR 1 70 -557 2 910 3034 50 11 3 chr9 42604601 42604982 -81471190 + L1Md_F3 LINE L1 6201 6584 0 2 910 610 294 181 38 chr9 42604982 42605454 -81470718 + MLT1E2 LTR MaLR 71 646 -8 2 910 507 299 112 26 chr9 42605485 42605718 -81470454 - MIRb SINE MIR -2 266 14 2 910 213 313 71 35 chr9 42605789 42605958 -81470214 - MIR SINE MIR -6 256 82 2 910 594 365 78 31 chr9 42608035 42608524 -81467648 - L2 LINE L2 -355 3064 2553 2 910 602 298 113 12 chr9 42608640 42608888 -81467284 - B4A SINE B4 -18 274 2 2 910 299 335 140 22 chr9 42608907 42609185 -81466987 - L2 LINE L2 -911 2508 2198 2 910 350 289 33 0 chr9 42609185 42609275 -81466897 + RSINE1 SINE B4 2 94 -71 2 910 187 329 47 35 chr9 42611249 42611334 -81464838 + MIRb SINE MIR 55 140 -128 2 910 1025 291 125 16 chr9 42611642 42611963 -81464209 - ORR1E LTR MaLR 0 359 4 2 910 303 260 64 55 chr9 42613009 42613119 -81463053 + HAL1-3A_ME LINE L1 2254 2364 -494 2 910 231 186 0 44 chr9 42613125 42613215 -81462957 + GA-rich Low_complexity Low_complexity 2 87 0 2 910 315 71 0 0 chr9 42614502 42614544 -81461628 + (TCC)n Simple_repeat Simple_repeat 1 42 0 2 910 743 243 0 7 chr9 42615432 42615581 -81460591 + B1_Mur1 SINE Alu 2 149 0 2 910 953 292 153 11 chr9 42617615 42618158 -81458014 + L1ME3A LINE L1 5312 5931 -242 2 910 1091 265 38 28 chr9 42618397 42618684 -81457488 + B4 SINE B4 3 292 0 2 910 620 87 11 0 chr9 42618724 42618816 -81457356 + (GA)n Simple_repeat Simple_repeat 2 94 0 2 910 22 0 0 0 chr9 42619151 42619173 -81456999 + AT_rich Low_complexity Low_complexity 1 22 0 2 910 882 327 61 39 chr9 42620716 42622462 -81453710 + L1MA8 LINE L1 1567 3430 -3415 2 910 369 298 42 13 chr9 42622458 42622696 -81453476 + L1MA8 LINE L1 4005 4249 -2596 2 910 258 217 72 0 chr9 42622699 42622768 -81453404 + L1MA8 LINE L1 5488 5561 -1284 2 910 481 278 124 8 chr9 42622766 42623020 -81453152 + L1MA8 LINE L1 5943 6259 -740 2 910 430 200 53 129 chr9 42623021 42623153 -81453019 + MT2B LTR ERVL 157 278 -323 2 910 908 85 23 8 chr9 42623051 42623181 -81452991 + B1_Mur4 SINE Alu 19 150 0 2 910 306 167 0 0 chr9 42623189 42623249 -81452923 + GA-rich Low_complexity Low_complexity 3 62 0 2 910 760 268 60 66 chr9 42623249 42623672 -81452500 + L1MA8 LINE L1 6298 6722 -280 2 910 210 167 0 0 chr9 42624027 42624063 -81452109 + GA-rich Low_complexity Low_complexity 4 39 0 2 910 555 239 0 0 chr9 42624093 42624446 -81451726 + (TG)n Simple_repeat Simple_repeat 1 353 0 2 910 476 218 0 6 chr9 42624461 42624613 -81451559 + (TG)n Simple_repeat Simple_repeat 1 152 0 2 910 1086 74 22 11 chr9 42624613 42624791 -81451381 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 910 476 218 0 6 chr9 42624791 42624818 -81451354 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 910 240 211 0 0 chr9 42624821 42624873 -81451299 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 2 910 380 237 7 0 chr9 42624873 42625025 -81451147 + (TG)n Simple_repeat Simple_repeat 2 154 0 2 910 256 306 113 35 chr9 42625121 42625236 -81450936 + L2b LINE L2 3246 3369 -6 2 910 623 260 82 14 chr9 42625358 42625678 -81450494 - ORR1E LTR MaLR 0 379 1 2 910 190 272 61 12 chr9 42626145 42626227 -81449945 + MIR3 SINE MIR 82 167 -41 2 910 285 247 52 0 chr9 42626636 42626713 -81449459 - L2a LINE L2 0 3426 3346 2 910 452 281 39 0 chr9 42626945 42627073 -81449099 + L2b LINE L2 3242 3374 -1 2 910 359 292 10 10 chr9 42628330 42628427 -81447745 + MIR3 SINE MIR 106 202 -6 2 910 408 330 57 33 chr9 42628440 42628650 -81447522 - MIR SINE MIR -1 261 47 2 910 347 350 36 0 chr9 42629702 42629842 -81446330 + MIRc SINE MIR 85 229 -39 2 910 625 215 13 46 chr9 42630142 42630293 -81445879 - RMER30 DNA MER1_type -22 180 35 2 910 1409 141 9 14 chr9 42630308 42630531 -81445641 - URR1A DNA MER1_type -4 222 1 2 910 864 303 9 31 chr9 42631797 42632022 -81444150 + ID_B1 SINE B4 1 220 -4 2 910 1085 258 68 76 chr9 42633494 42633876 -81442296 + MTEa LTR MaLR 1 379 0 2 910 230 116 23 0 chr9 42634816 42634859 -81441313 + (ATTG)n Simple_repeat Simple_repeat 3 46 0 2 910 495 330 44 54 chr9 42634884 42635089 -81441083 + B4 SINE B4 8 210 -82 2 910 444 86 0 0 chr9 42635092 42635162 -81441010 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 2 910 782 176 44 0 chr9 42635188 42635324 -81440848 - B1_Mm SINE Alu -1 146 5 2 910 198 167 0 0 chr9 42635439 42635475 -81440697 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 910 272 308 109 51 chr9 42635624 42635761 -81440411 + MIR3 SINE MIR 41 185 -23 2 910 1844 145 18 157 chr9 42636396 42636830 -81439342 - ORR1D1 LTR MaLR 0 374 1 2 910 333 229 14 0 chr9 42638219 42638289 -81437883 + MTEb LTR MaLR 294 364 -15 2 910 774 113 0 0 chr9 42638289 42638413 -81437759 + (CA)n Simple_repeat Simple_repeat 2 125 0 2 910 357 283 57 0 chr9 42638428 42638534 -81437638 + MTE-int LTR MaLR 56 167 -1413 2 910 670 254 61 45 chr9 42638555 42638801 -81437371 - RMER4B LTR ERVK -9 576 256 2 910 225 108 0 0 chr9 42638801 42638838 -81437334 + (CAG)n Simple_repeat Simple_repeat 1 37 0 2 910 670 260 96 38 chr9 42638838 42639055 -81437117 - RMER4B LTR ERVK -330 255 18 2 910 690 360 8 8 chr9 42639051 42639306 -81436866 + MTE-int LTR MaLR 154 408 -1172 2 910 231 243 61 70 chr9 42639327 42639442 -81436730 + MTE-int LTR MaLR 388 501 -1079 2 910 273 352 9 61 chr9 42639789 42639992 -81436180 - L2b LINE L2 -123 3252 3065 2 910 250 321 127 56 chr9 42640850 42640992 -81435180 + MIRb SINE MIR 56 207 -61 2 910 881 291 5 37 chr9 42642200 42642418 -81433754 - B4A SINE B4 -1 291 81 2 910 201 47 0 65 chr9 42642419 42642465 -81433707 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 2 910 298 175 53 0 chr9 42642466 42642518 -81433654 - B4A SINE B4 -217 75 21 2 910 1422 198 139 35 chr9 42642518 42642539 -81433633 + MTD LTR MaLR 1 17 -402 2 910 342 0 0 0 chr9 42642539 42642577 -81433595 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 910 1422 198 139 35 chr9 42642577 42642921 -81433251 + MTD LTR MaLR 18 404 -15 2 910 374 334 160 34 chr9 42643190 42643492 -81432680 + L1ME3A LINE L1 5653 5989 -184 2 910 578 151 0 9 chr9 42643612 42643719 -81432453 + (CA)n Simple_repeat Simple_repeat 1 106 0 2 910 224 293 48 12 chr9 42645164 42645247 -81430925 + MIR SINE MIR 10 95 -167 2 910 924 18 0 0 chr9 42645390 42645500 -81430672 + (TC)n Simple_repeat Simple_repeat 1 110 0 2 910 229 51 25 25 chr9 42645500 42645539 -81430633 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 910 452 267 71 26 chr9 42645906 42646060 -81430112 + RMER15 LTR ERVL 261 421 -154 2 910 616 321 20 36 chr9 42648111 42648360 -81427812 - MLT1A0 LTR MaLR -107 258 14 2 910 308 346 90 8 chr9 42648879 42649013 -81427159 + MER5A1 DNA MER1_type 2 146 -20 2 910 239 310 145 65 chr9 42649104 42649304 -81426868 - MIRb SINE MIR -23 245 30 2 910 643 283 148 14 chr9 42649568 42649851 -81426321 - Lx8 LINE L1 -2 7471 7151 2 910 183 344 30 40 chr9 42651027 42651127 -81425045 - MIRb SINE MIR -156 112 14 2 910 524 161 0 0 chr9 42651894 42651975 -81424197 + MTC LTR MaLR 4 84 -337 2 910 387 216 0 0 chr9 42651979 42652053 -81424119 + MTC LTR MaLR 340 413 -8 2 910 865 175 70 19 chr9 42652098 42652255 -81423917 + B3 SINE B2 1 165 -51 2 910 309 191 0 31 chr9 42652249 42652314 -81423858 - MTC LTR MaLR -358 63 1 2 910 461 225 45 0 chr9 42652331 42652420 -81423752 - ID_B1 SINE B4 -51 173 81 2 910 803 152 65 7 chr9 42652702 42652841 -81423331 - B1_Mur3 SINE Alu -2 147 1 2 910 1885 139 2 155 chr9 42652966 42653450 -81422722 + RMER17C LTR ERVK 1 410 0 2 910 818 263 73 15 chr9 42653999 42654273 -81421899 + B4A SINE B4 2 291 -1 2 910 407 202 193 0 chr9 42655151 42655184 -81420988 + B1F SINE Alu 1 130 -19 2 910 429 197 0 0 chr9 42655184 42655260 -81420912 + ID_B1 SINE B4 130 205 -19 2 910 223 225 0 0 chr9 42656355 42656395 -81419777 + G-rich Low_complexity Low_complexity 1 40 0 2 910 376 250 45 0 chr9 42657016 42657104 -81419068 - MTEa LTR MaLR -287 92 1 2 910 601 325 52 19 chr9 42657538 42657805 -81418367 + MLT1C LTR MaLR 190 465 -2 2 910 244 233 92 18 chr9 42657987 42658085 -81418087 + MIR SINE MIR 26 128 -140 2 910 467 331 82 74 chr9 42658951 42659303 -81416869 + ORR1E LTR MaLR 1 355 -4 2 910 229 245 28 121 chr9 42660326 42660417 -81415755 - L2c LINE L2 -5 3421 3299 2 910 279 0 0 0 chr9 42660497 42660528 -81415644 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 910 242 284 40 13 chr9 42660608 42660683 -81415489 + MIRb SINE MIR 192 268 0 2 910 232 254 0 0 chr9 42661350 42661405 -81414767 + LTR16A LTR ERVL 18 72 -379 2 910 372 77 0 0 chr9 42661539 42661591 -81414581 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 910 190 250 161 0 chr9 42661778 42661834 -81414338 + MIR SINE MIR 34 98 -110 2 910 193 254 132 15 chr9 42661885 42661953 -81414219 + L3 LINE CR1 831 906 -3583 2 910 414 0 0 0 chr9 42661981 42662027 -81414145 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 910 353 164 0 103 chr9 42662927 42662995 -81413177 - MTC LTR MaLR 0 421 361 2 910 1214 118 22 0 chr9 42662996 42663174 -81412998 + B2_Mm2 SINE B2 1 182 -13 2 910 390 117 0 12 chr9 42663205 42663313 -81412859 + B2_Mm2 SINE B2 47 189 -6 2 910 2322 109 76 14 chr9 42663326 42663680 -81412492 - MTC LTR MaLR -44 377 2 2 910 443 312 62 78 chr9 42664007 42664264 -81411908 + MTEa LTR MaLR 15 267 -112 2 910 1243 35 7 0 chr9 42664472 42664617 -81411555 + B1_Mus2 SINE Alu 2 147 0 2 910 214 182 0 0 chr9 42664617 42664661 -81411511 + A-rich Low_complexity Low_complexity 1 44 0 2 910 1562 230 145 74 chr9 42664797 42665308 -81410864 - RMER13A LTR ERVK -55 805 259 2 910 331 318 62 31 chr9 42665341 42665503 -81410669 + RMER15 LTR ERVL 275 441 -134 2 910 545 156 89 32 chr9 42665418 42665552 -81410620 + ORR1C2 LTR MaLR 232 384 0 2 910 312 70 0 0 chr9 42665594 42665637 -81410535 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 910 279 135 77 0 chr9 42665730 42665782 -81410390 - ORR1B2 LTR MaLR 0 367 312 3 910 279 244 18 35 chr9 42666957 42667043 -81409129 - MIRc SINE MIR -116 152 63 3 910 285 29 0 0 chr9 42667941 42667975 -81408197 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 910 558 0 0 0 chr9 42667975 42668036 -81408136 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 910 869 201 80 104 chr9 42670969 42671268 -81404904 + B4 SINE B4 1 292 0 3 910 484 306 7 0 chr9 42671570 42671717 -81404455 - MER63D DNA AcHobo -659 402 255 3 910 324 0 0 0 chr9 42672156 42672192 -81403980 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 910 807 292 15 66 chr9 42672228 42672499 -81403673 - B4A SINE B4 -35 257 1 3 910 581 232 70 66 chr9 42672771 42672964 -81403208 + MTEa LTR MaLR 161 378 -1 3 910 282 267 11 11 chr9 42673514 42673605 -81402567 + MIR3 SINE MIR 70 160 -48 3 910 321 242 0 0 chr9 42675411 42675473 -81400699 + B3 SINE B2 99 160 -56 3 910 495 0 0 0 chr9 42675477 42675532 -81400640 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 910 30 21 0 21 chr9 42675543 42675564 -81400608 + AT_rich Low_complexity Low_complexity 1 21 0 3 910 913 74 201 12 chr9 42675564 42675728 -81400444 + B2_Mm2 SINE B2 1 195 0 3 910 30 21 0 21 chr9 42675728 42675754 -81400418 + AT_rich Low_complexity Low_complexity 1 26 0 3 910 952 101 0 0 chr9 42675805 42675943 -81400229 + B1_Mus2 SINE Alu 9 146 -1 3 910 250 179 35 18 chr9 42676079 42676136 -81400036 + MLT1G3 LTR MaLR 522 579 -16 3 910 202 355 26 0 chr9 42676273 42676349 -81399823 + MIRm SINE MIR 36 113 -163 3 910 819 88 72 22 chr9 42677965 42678104 -81398068 + URR1A DNA MER1_type 81 226 0 3 910 200 176 0 0 chr9 42678526 42678560 -81397612 + G-rich Low_complexity Low_complexity 2 35 0 3 910 513 301 15 66 chr9 42679446 42679642 -81396530 - MER21B LTR ERV1 -677 186 1 3 910 188 386 83 30 chr9 42680113 42680281 -81395891 - MIRb SINE MIR -16 252 76 3 910 1937 125 23 22 chr9 42680305 42680705 -81395467 - ORR1A2 LTR MaLR 0 394 1 3 910 2303 160 115 15 chr9 42682421 42682953 -81393219 + RMER4B LTR ERVK 1 585 0 3 910 224 327 0 0 chr9 42684206 42684261 -81391911 + MER5A DNA MER1_type 7 61 -128 3 910 691 278 48 110 chr9 42684283 42684364 -81391808 + ORR1E LTR MaLR 3 81 -278 3 910 2461 143 19 14 chr9 42684364 42684783 -81391389 - MTC LTR MaLR 0 421 1 3 910 691 278 48 110 chr9 42684783 42685037 -81391135 + ORR1E LTR MaLR 82 317 -42 3 910 332 219 52 49 chr9 42685407 42685565 -81390607 + MER20 DNA MER1_type 6 198 -21 3 910 240 35 0 0 chr9 42686061 42686090 -81390082 + (CCCTAA)n Simple_repeat Simple_repeat 3 31 0 3 910 418 248 19 19 chr9 42687913 42688020 -81388152 + PB1D10 SINE Alu 10 116 -1 3 910 387 0 0 0 chr9 42688876 42688919 -81387253 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 3 910 729 34 0 0 chr9 42688919 42689006 -81387166 + (GAGAA)n Simple_repeat Simple_repeat 2 89 0 3 910 458 254 28 21 chr9 42689082 42689228 -81386944 + L1ME1 LINE L1 5056 5202 -944 3 910 380 250 93 23 chr9 42689335 42689507 -81386665 + L1MB3 LINE L1 5789 5972 -211 3 910 284 276 35 48 chr9 42689868 42690015 -81386157 + L1ME1 LINE L1 5190 5335 -811 3 910 710 294 88 81 chr9 42690157 42690564 -81385608 + L1ME1 LINE L1 5668 6077 -102 3 910 421 301 132 27 chr9 42690689 42691023 -81385149 + L2b LINE L2 2674 3042 -377 3 910 231 217 22 0 chr9 42691260 42691306 -81384866 + L2b LINE L2 3314 3360 -15 3 910 206 300 0 0 chr9 42692167 42692227 -81383945 + CT-rich Low_complexity Low_complexity 2 61 0 3 910 572 277 75 6 chr9 42695141 42695301 -81380871 + B3A SINE B2 2 172 -26 3 910 423 0 0 0 chr9 42695336 42695383 -81380789 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 3 910 674 246 41 57 chr9 42695389 42695561 -81380611 - ORR1E LTR MaLR -177 182 19 3 910 2261 96 9 9 chr9 42695561 42695888 -81380284 + ORR1A2 LTR MaLR 1 327 0 3 910 674 241 43 54 chr9 42695888 42695912 -81380260 - ORR1E LTR MaLR -341 18 1 3 910 209 273 15 29 chr9 42696108 42696176 -81379996 + MIRb SINE MIR 124 190 -78 3 910 647 291 170 16 chr9 42698384 42698695 -81377477 + MLT1A0 LTR MaLR 7 365 0 3 910 1832 177 35 19 chr9 42699790 42700158 -81376014 + ORR1D1 LTR MaLR 1 374 0 3 910 303 185 0 0 chr9 42700339 42700404 -81375768 + HAL1 LINE L1 2102 2166 -341 3 910 321 315 0 11 chr9 42701450 42701543 -81374629 + B1F SINE Alu 1 92 -57 3 910 1144 210 88 43 chr9 42701618 42701954 -81374218 + ORR1D1 LTR MaLR 1 394 0 3 910 908 267 14 25 chr9 42702238 42702522 -81373650 - B4A SINE B4 -8 284 4 3 910 888 145 0 7 chr9 42703778 42703924 -81372248 + B1_Mur4 SINE Alu 6 150 0 3 910 775 248 123 52 chr9 42704245 42704496 -81371676 - B4 SINE B4 -22 270 2 3 910 285 167 0 0 chr9 42707231 42707285 -81368887 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 910 456 255 73 43 chr9 42708652 42708816 -81367356 + HAL1-2a_MD LINE L1 2322 2490 -534 3 910 916 304 90 34 chr9 42708895 42709252 -81366920 + MTEa LTR MaLR 1 377 -2 3 910 422 36 0 18 chr9 42709271 42709328 -81366844 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 910 411 267 0 28 chr9 42709347 42709455 -81366717 - B4 SINE B4 -42 250 146 3 910 521 252 26 58 chr9 42711308 42711464 -81364708 - RSINE1 SINE B4 -14 151 1 3 910 398 168 126 13 chr9 42711485 42711612 -81364560 - L1MA4 LINE L1 -215 5941 5800 3 910 413 290 63 34 chr9 42711767 42711942 -81364230 - MIRb SINE MIR -53 215 36 3 910 342 0 0 0 chr9 42711993 42712031 -81364141 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 910 21 36 0 0 chr9 42712965 42712993 -81363179 + AT_rich Low_complexity Low_complexity 1 28 0 3 910 2282 261 142 32 chr9 42712993 42713672 -81362500 - Lx8 LINE L1 -4 7469 6704 3 910 342 0 0 0 chr9 42713672 42713710 -81362462 + (TTG)n Simple_repeat Simple_repeat 1 38 0 3 910 2282 261 142 32 chr9 42713710 42713835 -81362337 - Lx8 LINE L1 -770 6703 6578 3 910 242 350 16 0 chr9 42714227 42714350 -81361822 - L2 LINE L2 -720 2699 2575 3 910 508 259 86 6 chr9 42714498 42714661 -81361511 + B3A SINE B2 5 180 -18 3 910 378 240 7 94 chr9 42714747 42714766 -81361406 + ID_B1 SINE B4 77 202 -22 3 910 665 202 0 0 chr9 42714766 42714885 -81361287 + B1_Mur1 SINE Alu 9 127 -22 3 910 551 40 14 0 chr9 42716449 42716523 -81359649 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 910 591 139 0 0 chr9 42716528 42716657 -81359515 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 910 357 303 31 54 chr9 42717978 42718107 -81358065 + PB1 SINE Alu 2 127 0 3 910 258 300 25 0 chr9 42718112 42718192 -81357980 + ID4 SINE ID 2 83 0 3 910 332 352 87 16 chr9 42718987 42719172 -81357000 + L2c LINE L2 2686 2883 -536 3 910 272 196 0 0 chr9 42719172 42719228 -81356944 - MLT1K LTR MaLR -23 572 517 3 910 222 302 84 9 chr9 42720213 42720320 -81355852 + L2c LINE L2 3029 3143 -244 3 910 21 0 0 0 chr9 42720828 42720849 -81355323 + AT_rich Low_complexity Low_complexity 1 21 0 3 910 693 258 24 14 chr9 42722735 42722947 -81353225 + B3 SINE B2 3 216 0 3 910 730 238 108 46 chr9 42723324 42723521 -81352651 + ID_B1 SINE B4 3 203 -21 3 910 854 116 0 7 chr9 42723527 42723666 -81352506 + (GGA)n Simple_repeat Simple_repeat 1 138 0 3 910 1090 41 0 70 chr9 42723696 42723854 -81352318 + B1_Mus1 SINE Alu 2 148 0 3 910 223 203 26 26 chr9 42723854 42723922 -81352250 + A-rich Low_complexity Low_complexity 12 79 0 3 910 656 169 6 22 chr9 42723905 42724086 -81352086 + GA-rich Low_complexity Low_complexity 1 178 0 3 910 274 146 0 0 chr9 42724108 42724149 -81352023 + (GGA)n Simple_repeat Simple_repeat 1 41 0 3 910 486 311 15 8 chr9 42725099 42725232 -81350940 + MTEa LTR MaLR 8 141 -238 3 910 375 313 104 54 chr9 42725126 42725423 -81350749 + MT2A LTR ERVL 35 346 -187 3 910 230 186 0 0 chr9 42725468 42725511 -81350661 + MLT2C1 LTR ERVL 520 562 -1 3 910 1199 299 91 55 chr9 42725565 42726608 -81349564 - L1MA9 LINE L1 -272 6040 4937 3 910 295 213 36 96 chr9 42726608 42726691 -81349481 - ID4 SINE ID -2 81 4 3 910 549 228 52 0 chr9 42726698 42726834 -81349338 - B1F SINE Alu -6 143 1 3 910 1187 299 68 79 chr9 42726834 42727157 -81349015 - L1MA9 LINE L1 -1204 4936 4616 3 910 289 214 0 67 chr9 42727618 42727693 -81348479 - Charlie4z DNA MER1_type -14 153 84 3 910 189 0 0 0 chr9 42728790 42728811 -81347361 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 3 911 181 307 133 58 chr9 42730390 42730563 -81345609 - L2c LINE L2 0 3387 3202 3 911 706 198 6 6 chr9 42731206 42731384 -81344788 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 911 299 333 137 68 chr9 42731399 42731589 -81344583 - B4A SINE B4 0 292 90 3 911 262 358 149 27 chr9 42731632 42731853 -81344319 - L3 LINE CR1 -723 3766 3519 3 911 292 353 34 16 chr9 42732870 42733082 -81343090 + L2c LINE L2 2990 3204 -171 3 911 312 222 7 20 chr9 42733266 42733369 -81342803 - L2a LINE L2 -30 3396 3276 3 911 209 351 17 42 chr9 42733909 42734028 -81342144 - L2c LINE L2 -237 3150 3035 3 911 355 269 16 65 chr9 42737269 42737392 -81338780 - PB1D10 SINE Alu 0 117 1 3 911 181 250 45 0 chr9 42737900 42737944 -81338228 + L2 LINE L2 2812 2857 -562 3 911 1059 149 17 0 chr9 42739298 42739473 -81336699 + URR1B DNA MER1_type 48 225 0 3 911 755 250 0 59 chr9 42740219 42740406 -81335766 - ID_B1 SINE B4 -2 222 47 3 911 188 281 18 0 chr9 42741538 42741595 -81334577 - L2 LINE L2 -337 3082 3025 3 911 221 273 264 8 chr9 42742582 42742711 -81333461 + MIRb SINE MIR 48 209 -59 4 911 390 21 0 0 chr9 42743337 42743384 -81332788 + (CAGCC)n Simple_repeat Simple_repeat 5 51 0 4 911 207 100 0 0 chr9 42746520 42746550 -81329622 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 911 801 156 210 0 chr9 42746650 42746836 -81329336 + URR1A DNA MER1_type 1 225 -1 4 911 190 106 43 0 chr9 42749190 42749237 -81326935 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 4 911 244 287 93 79 chr9 42749597 42749737 -81326435 - MIR SINE MIR -115 147 6 4 911 21 36 0 0 chr9 42752369 42752397 -81323775 + GC_rich Low_complexity Low_complexity 1 28 0 4 911 255 61 0 0 chr9 42752485 42752518 -81323654 + (T)n Simple_repeat Simple_repeat 1 33 0 4 911 804 50 0 0 chr9 42755715 42755816 -81320356 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 911 965 153 37 21 chr9 42757496 42757683 -81318489 + B2_Mm2 SINE B2 5 194 -1 4 911 495 235 36 29 chr9 42758163 42758303 -81317869 + B3A SINE B2 16 156 -42 4 911 183 42 0 0 chr9 42758307 42758331 -81317841 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 911 435 283 219 16 chr9 42758604 42758855 -81317317 + RMER15 LTR ERVL 274 575 0 4 911 665 276 6 43 chr9 42759646 42759809 -81316363 + ID_B1 SINE B4 2 158 -66 4 911 216 0 0 0 chr9 42759822 42759846 -81316326 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 911 266 250 14 14 chr9 42759851 42759924 -81316248 + (TATG)n Simple_repeat Simple_repeat 2 74 0 4 911 1226 83 44 6 chr9 42760017 42760199 -81315973 + RMER17A LTR ERVK 1 189 -562 4 911 1114 87 14 37 chr9 42760194 42760207 -81315965 + RMER17A LTR ERVK 338 345 -406 4 911 780 74 0 0 chr9 42760207 42760315 -81315857 + (TTC)n Simple_repeat Simple_repeat 3 110 0 4 911 1114 87 14 37 chr9 42760315 42760517 -81315655 + RMER17A LTR ERVK 346 548 -203 4 911 418 226 14 82 chr9 42760499 42760645 -81315527 + RMER17A LTR ERVK 681 887 -19 4 911 279 0 0 0 chr9 42760967 42760998 -81315174 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 911 226 298 248 8 chr9 42761077 42761202 -81314970 + L3 LINE CR1 4228 4382 -107 4 911 1014 257 53 8 chr9 42761680 42761943 -81314229 + B4A SINE B4 2 276 -16 4 911 420 71 0 0 chr9 42761947 42762003 -81314169 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 911 469 233 112 102 chr9 42762337 42762533 -81313639 + B3A SINE B2 1 198 0 4 911 213 226 0 0 chr9 42762807 42762860 -81313312 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 911 571 254 109 35 chr9 42762861 42763118 -81313054 + B4A SINE B4 3 278 -14 4 911 2382 148 39 2 chr9 42763414 42763820 -81312352 + MTC LTR MaLR 1 421 0 4 911 242 306 75 94 chr9 42766030 42766189 -81309983 - MIRb SINE MIR 0 268 113 4 911 216 0 0 0 chr9 42766354 42766378 -81309794 + (CAGAC)n Simple_repeat Simple_repeat 1 24 0 4 911 640 231 168 0 chr9 42766797 42767005 -81309167 + L1MB5 LINE L1 5758 6000 -174 4 911 281 256 46 11 chr9 42767119 42767206 -81308966 + (CATG)n Simple_repeat Simple_repeat 1 90 0 4 911 410 218 118 0 chr9 42767453 42767563 -81308609 - B4A SINE B4 -168 124 2 4 911 377 239 34 11 chr9 42767593 42767682 -81308490 - PB1D7 SINE Alu -29 91 1 4 911 3358 28 0 0 chr9 42767935 42768331 -81307841 + MTA_Mm LTR MaLR 1 396 0 4 911 437 226 129 0 chr9 42769628 42769752 -81306420 - B1_Mur2 SINE Alu -7 142 3 4 911 324 259 207 12 chr9 42769940 42770104 -81306068 + B4 SINE B4 97 292 0 4 911 578 273 25 0 chr9 42770912 42771073 -81305099 - B3A SINE B2 -33 165 1 4 911 496 205 67 90 chr9 42771458 42771592 -81304580 - B1_Mur1 SINE Alu -13 136 6 4 911 198 91 0 0 chr9 42772501 42772534 -81303638 + (CAAAAA)n Simple_repeat Simple_repeat 1 33 0 4 911 281 303 0 0 chr9 42772870 42772951 -81303221 + ID4 SINE ID 12 92 -60 4 911 219 69 0 0 chr9 42778315 42778344 -81297828 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 911 525 266 64 22 chr9 42778362 42778556 -81297616 + Lx7 LINE L1 7329 7692 -4 4 911 468 0 0 0 chr9 42781806 42781858 -81294314 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 911 408 71 0 0 chr9 42781858 42781913 -81294259 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 911 448 95 42 0 chr9 42782303 42782398 -81293774 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 4 911 270 0 0 0 chr9 42782400 42782430 -81293742 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 911 261 139 0 0 chr9 42783652 42783695 -81292477 + (A)n Simple_repeat Simple_repeat 1 43 0 4 911 712 244 22 28 chr9 42783803 42783984 -81292188 + B3A SINE B2 2 181 -17 4 911 243 88 0 0 chr9 42783987 42784021 -81292151 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 911 745 83 0 32 chr9 42784607 42784732 -81291440 + Lx LINE L1 6533 6653 -1 4 911 414 187 0 0 chr9 42784838 42784929 -81291243 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 911 730 175 256 6 chr9 42785133 42785305 -81290867 + B3 SINE B2 2 216 0 4 911 198 0 0 0 chr9 42785598 42785620 -81290552 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 911 21 57 0 0 chr9 42787049 42787084 -81289088 + AT_rich Low_complexity Low_complexity 1 35 0 4 911 1426 208 121 8 chr9 42788092 42788465 -81287707 + MTD LTR MaLR 3 417 -2 4 911 279 266 93 8 chr9 42788808 42788937 -81287235 - L1ME2z LINE L1 -123 6321 6182 4 911 1431 99 0 10 chr9 42788971 42789165 -81287007 + B2_Mm2 SINE B2 2 193 -2 4 911 573 269 18 30 chr9 42789198 42789363 -81286809 - RSINE1 SINE B4 -1 164 2 4 911 537 348 28 28 chr9 42789369 42789688 -81286484 - L1ME2z LINE L1 -277 6167 5849 4 911 1200 54 0 26 chr9 42790263 42790415 -81285757 + B1_Mus1 SINE Alu 1 148 0 4 911 277 284 124 11 chr9 42790556 42790645 -81285527 + PB1D10 SINE Alu 24 122 -5 4 911 942 125 14 27 chr9 42790645 42790793 -81285379 - B1_Mus1 SINE Alu -1 147 2 4 911 421 291 29 22 chr9 42791688 42791728 -81284444 + ID_B1 SINE B4 85 124 -100 4 911 886 188 172 0 chr9 42791728 42791920 -81284252 - URR1B DNA MER1_type 0 225 1 4 911 421 291 29 22 chr9 42791920 42792016 -81284156 + ID_B1 SINE B4 125 221 -3 4 911 654 221 80 17 chr9 42792247 42792427 -81283745 - B3A SINE B2 -34 182 1 4 911 216 65 0 0 chr9 42792730 42792761 -81283411 + B1_Mus2 SINE Alu 96 126 -21 4 911 327 157 29 0 chr9 42793153 42793223 -81282949 - B3A SINE B2 -126 72 1 4 911 233 302 102 42 chr9 42793242 42793408 -81282764 + MLT1E1A LTR MaLR 281 456 -224 4 911 806 30 10 0 chr9 42793411 42793512 -81282660 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 4 911 279 0 0 0 chr9 42793813 42793844 -81282328 + (A)n Simple_repeat Simple_repeat 1 31 0 4 911 1040 185 59 15 chr9 42794214 42794417 -81281755 + B3 SINE B2 1 212 -4 4 911 1467 143 0 26 chr9 42795393 42795623 -81280549 - URR1B DNA MER1_type -1 224 1 4 911 262 342 0 0 chr9 42795941 42796020 -81280152 + ID4 SINE ID 3 81 -2 4 911 558 219 144 74 chr9 42796389 42796591 -81279581 + B3 SINE B2 1 216 0 4 911 27 29 0 0 chr9 42797674 42797708 -81278464 + AT_rich Low_complexity Low_complexity 1 34 0 4 911 240 242 0 0 chr9 42797767 42797829 -81278343 - MamRep137 DNA TcMar? -348 96 35 4 911 556 302 65 42 chr9 42798680 42798988 -81277184 + MTD LTR MaLR 17 331 -88 4 911 3164 107 40 66 chr9 42799272 42799875 -81276297 - RLTR6_Mm LTR ERV1 -67 587 1 4 911 200 200 0 43 chr9 42800178 42800225 -81275947 + (TATG)n Simple_repeat Simple_repeat 4 48 0 4 911 1000 127 0 32 chr9 42800716 42800871 -81275301 + B1_Mur4 SINE Alu 1 150 0 4 911 447 137 0 0 chr9 42801396 42801469 -81274703 + (TCCCC)n Simple_repeat Simple_repeat 4 76 0 4 911 439 214 0 12 chr9 42801480 42801565 -81274607 - PB1D9 SINE Alu -25 95 12 4 911 1228 41 0 0 chr9 42801565 42801712 -81274460 + B1_Mus2 SINE Alu 1 147 0 4 911 23 33 0 0 chr9 42802722 42802752 -81273420 + AT_rich Low_complexity Low_complexity 1 30 0 4 911 268 271 35 109 chr9 42802767 42802941 -81273231 - RSINE1 SINE B4 -1 164 4 4 911 410 232 214 9 chr9 42803247 42803375 -81272797 - B4A SINE B4 -14 278 121 4 911 226 317 89 0 chr9 42804232 42804333 -81271839 + MLT1F1 LTR MaLR 182 291 -278 4 911 396 0 0 0 chr9 42805105 42805149 -81271023 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 911 586 243 149 67 chr9 42806602 42806871 -81269301 - B4 SINE B4 0 292 2 4 911 25 51 0 0 chr9 42806876 42806915 -81269257 + AT_rich Low_complexity Low_complexity 1 39 0 4 911 529 294 0 0 chr9 42807450 42807593 -81268579 - ID_B1 SINE B4 -2 222 80 4 911 858 236 64 88 chr9 42810855 42810922 -81265250 - B4A SINE B4 -2 290 220 4 911 1760 10 0 0 chr9 42810922 42811115 -81265057 - B2_Mm1a SINE B2 0 193 1 4 911 858 236 64 88 chr9 42811115 42811344 -81264828 - B4A SINE B4 -73 219 1 4 911 391 287 50 0 chr9 42811360 42811461 -81264711 + PB1D10 SINE Alu 2 107 -10 4 911 360 284 95 76 chr9 42812090 42812300 -81263872 + ID_B1 SINE B4 2 215 -9 4 911 516 281 93 42 chr9 42812355 42812548 -81263624 + B4A SINE B4 28 230 -62 4 911 432 297 50 21 chr9 42812549 42812690 -81263482 + RSINE1 SINE B4 4 148 -17 4 911 246 81 0 0 chr9 42812702 42812739 -81263433 + (TAA)n Simple_repeat Simple_repeat 1 37 0 4 911 641 266 206 0 chr9 42812979 42813212 -81262960 - B4A SINE B4 -8 284 4 4 911 266 239 203 40 chr9 42814150 42814298 -81261874 + ORR1E LTR MaLR 18 189 -170 4 911 290 239 77 115 chr9 42814385 42814489 -81261683 - PB1D10 SINE Alu -1 116 17 4 911 30 0 0 0 chr9 42814497 42814527 -81261645 + AT_rich Low_complexity Low_complexity 1 30 0 4 911 412 193 248 24 chr9 42814536 42814706 -81261466 + B3 SINE B2 2 198 0 5 911 293 305 24 0 chr9 42814859 42814941 -81261231 + RSINE1 SINE B4 82 165 0 5 911 445 299 84 97 chr9 42814999 42815468 -81260704 + L1MD LINE L1 3789 4249 -1897 5 911 229 257 40 54 chr9 42815487 42815561 -81260611 - B1F SINE Alu -29 120 48 5 911 524 181 155 0 chr9 42815598 42815714 -81260458 + ID_B1 SINE B4 84 217 -7 5 911 329 305 33 72 chr9 42816367 42816547 -81259625 - RLTR17 LTR ERVK -322 370 198 5 911 241 273 26 0 chr9 42816828 42816905 -81259267 - ID4 SINE ID -3 80 2 5 911 491 243 159 21 chr9 42817128 42817317 -81258855 + B3 SINE B2 2 216 0 5 911 657 178 18 32 chr9 42817679 42817829 -81258343 + L1MB3 LINE L1 5797 5944 -224 5 911 267 292 9 86 chr9 42817829 42817934 -81258238 + B4A SINE B4 73 169 -123 5 911 470 248 0 0 chr9 42817861 42817970 -81258202 + PB1D9 SINE Alu 12 120 0 5 911 21 0 0 0 chr9 42818897 42818918 -81257254 + AT_rich Low_complexity Low_complexity 1 21 0 5 911 683 68 29 0 chr9 42818930 42819033 -81257139 + B1_Mus2 SINE Alu 29 134 -13 5 911 342 0 0 0 chr9 42819033 42819071 -81257101 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 911 282 250 159 30 chr9 42819387 42819519 -81256653 + RMER15 LTR ERVL 422 570 -5 5 911 349 276 47 27 chr9 42819753 42819902 -81256270 + L1MC5 LINE L1 7260 7411 -550 5 911 200 203 34 0 chr9 42819967 42820026 -81256146 + GA-rich Low_complexity Low_complexity 5 65 0 5 911 25 0 0 0 chr9 42820155 42820180 -81255992 + AT_rich Low_complexity Low_complexity 1 25 0 5 911 32 57 0 0 chr9 42820412 42820465 -81255707 + AT_rich Low_complexity Low_complexity 1 53 0 5 911 666 285 59 42 chr9 42820735 42821021 -81255151 + B4A SINE B4 2 292 0 5 911 2004 154 3 0 chr9 42821567 42821905 -81254267 + MTC LTR MaLR 11 349 -72 5 911 1156 92 90 22 chr9 42822662 42822840 -81253332 + B2_Mm2 SINE B2 2 191 -4 5 911 606 238 0 8 chr9 42823134 42823261 -81252911 - B1_Mur1 SINE Alu -23 126 1 5 911 1170 82 0 0 chr9 42823346 42823492 -81252680 - B1_Mus1 SINE Alu 0 148 3 5 911 231 218 0 0 chr9 42824390 42824445 -81251727 + (CATA)n Simple_repeat Simple_repeat 1 55 0 5 911 410 272 0 75 chr9 42825243 42825260 -81250912 + ID_B1 SINE B4 78 224 0 5 911 535 257 0 42 chr9 42825260 42825402 -81250770 + B1F1 SINE Alu 13 148 -1 5 911 259 231 0 13 chr9 42825569 42825648 -81250524 - PB1D10 SINE Alu 0 117 40 5 911 1097 62 0 21 chr9 42826780 42827067 -81249105 + (TCCA)n Simple_repeat Simple_repeat 1 280 0 5 911 1222 50 0 24 chr9 42827084 42827767 -81248405 + (TCCA)n Simple_repeat Simple_repeat 1 666 0 5 911 323 310 30 0 chr9 42828301 42828401 -81247771 - L2a LINE L2 -5 3421 3319 5 911 525 254 14 14 chr9 42829018 42829158 -81247014 - ID_B1 SINE B4 -1 223 84 5 911 617 324 19 5 chr9 42829414 42829625 -81246547 + ID_B1 SINE B4 1 214 -10 5 911 563 304 53 6 chr9 42830683 42830852 -81245320 + MER58A DNA MER1_type 47 223 -1 5 911 767 270 49 39 chr9 42831332 42831617 -81244555 + B4 SINE B4 1 288 -4 5 911 242 228 139 0 chr9 42831847 42831926 -81244246 - PB1D10 SINE Alu -6 111 22 5 911 37 52 0 0 chr9 42832073 42832131 -81244041 + AT_rich Low_complexity Low_complexity 1 58 0 5 911 319 125 13 34 chr9 42832138 42832205 -81243967 - B2_Mm2 SINE B2 -82 116 46 5 911 1133 84 12 0 chr9 42832251 42832417 -81243755 - B2_Mm1t SINE B2 -14 179 12 5 911 1166 68 0 26 chr9 42832444 42832595 -81243577 - B1_Mm SINE Alu 0 147 1 5 911 283 202 162 57 chr9 42832887 42832992 -81243180 - B1F2 SINE Alu 0 149 34 5 911 23 0 0 0 chr9 42833003 42833026 -81243146 + AT_rich Low_complexity Low_complexity 1 23 0 5 911 346 244 125 142 chr9 42833048 42833344 -81242828 + B4A SINE B4 2 292 0 5 911 646 216 215 6 chr9 42833550 42833727 -81242445 + ID_B1 SINE B4 2 215 -9 5 911 294 333 44 0 chr9 42834364 42834454 -81241718 + MIRb SINE MIR 2 95 -173 5 911 1325 21 7 0 chr9 42834955 42835100 -81241072 - B1_Mus2 SINE Alu 0 147 2 5 911 837 192 13 33 chr9 42835104 42835255 -81240917 - B1F2 SINE Alu 0 149 2 5 911 423 296 45 38 chr9 42836025 42836212 -81239960 + B3A SINE B2 2 196 -2 5 911 231 302 26 94 chr9 42836662 42836779 -81239393 + MT2B LTR ERVL 148 256 -345 5 911 439 278 23 0 chr9 42836684 42836818 -81239354 + B1F2 SINE Alu 8 149 0 5 911 926 122 7 28 chr9 42836822 42836952 -81239220 + B1_Mus1 SINE Alu 5 135 -13 5 911 195 42 0 0 chr9 42836952 42836976 -81239196 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 5 911 926 122 7 28 chr9 42836976 42836989 -81239183 + B1_Mus1 SINE Alu 136 145 -3 5 911 1087 172 109 38 chr9 42837024 42837235 -81238937 - URR1A DNA MER1_type 0 226 1 5 911 1447 89 21 0 chr9 42837296 42837487 -81238685 + B2_Mm2 SINE B2 1 195 0 5 911 1143 227 0 5 chr9 42837560 42837777 -81238395 + B3 SINE B2 1 216 0 5 911 622 238 82 40 chr9 42837820 42838103 -81238069 + L1ME1 LINE L1 5329 5621 -738 5 911 384 326 104 37 chr9 42838101 42838506 -81237666 + L1ME1 LINE L1 5733 6164 -15 5 911 191 61 30 0 chr9 42838628 42838661 -81237511 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 911 855 180 129 43 chr9 42838680 42838866 -81237306 - B3 SINE B2 -14 202 1 5 911 291 275 14 14 chr9 42838880 42838950 -81237222 + PB1D10 SINE Alu 38 107 -10 5 911 603 264 98 6 chr9 42839077 42839241 -81236931 + B3 SINE B2 38 216 0 5 911 561 237 86 0 chr9 42839427 42839566 -81236606 - B4A SINE B4 -40 252 102 5 911 323 233 0 0 chr9 42839637 42839697 -81236475 - ID_B1 SINE B4 -73 151 92 5 911 26 50 0 0 chr9 42840022 42840062 -81236110 + AT_rich Low_complexity Low_complexity 1 40 0 5 911 248 243 0 103 chr9 42840265 42840329 -81235843 + ORR1C2 LTR MaLR 114 170 -204 5 911 198 0 0 0 chr9 42840329 42840351 -81235821 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 911 248 243 0 103 chr9 42840351 42840364 -81235808 + ORR1C2 LTR MaLR 171 183 -191 5 911 363 44 0 0 chr9 42840390 42840435 -81235737 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 911 309 192 0 19 chr9 42840525 42840578 -81235594 + ORR1C2 LTR MaLR 332 383 -1 5 911 414 290 15 30 chr9 42840839 42840974 -81235198 + ID_B1 SINE B4 88 220 -4 5 911 360 292 25 42 chr9 42841585 42841703 -81234469 + PB1D10 SINE Alu 1 116 -1 5 911 24 0 0 0 chr9 42841713 42841737 -81234435 + AT_rich Low_complexity Low_complexity 1 24 0 5 911 499 313 43 29 chr9 42841737 42841875 -81234297 + RSINE1 SINE B4 3 142 -23 5 911 225 0 0 0 chr9 42841876 42841901 -81234271 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 911 314 284 12 24 chr9 42841916 42841999 -81234173 + B3A SINE B2 1 82 -116 5 911 193 53 25 50 chr9 42842036 42842076 -81234096 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 5 911 1300 48 0 0 chr9 42842079 42842226 -81233946 - B1_Mus1 SINE Alu 0 148 2 5 911 331 323 0 50 chr9 42842227 42842328 -81233844 + B3A SINE B2 102 197 -1 5 911 330 26 0 0 chr9 42842636 42842675 -81233497 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 911 231 36 0 0 chr9 42842693 42842721 -81233451 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 911 353 87 0 0 chr9 42842724 42842770 -81233402 - HAL1-3A_ME LINE L1 -846 2012 1967 5 911 716 99 9 0 chr9 42842842 42842953 -81233219 + (GGGA)n Simple_repeat Simple_repeat 4 115 0 5 911 941 95 14 14 chr9 42844444 42844583 -81231589 + B1_Mus1 SINE Alu 10 148 0 5 911 292 275 75 103 chr9 42844457 42844603 -81231569 + B4A SINE B4 107 248 -44 5 911 700 99 30 0 chr9 42844783 42844914 -81231258 + (GGGA)n Simple_repeat Simple_repeat 3 137 0 5 911 396 275 45 18 chr9 42844917 42845028 -81231144 + PB1D10 SINE Alu 4 117 0 5 911 472 270 233 49 chr9 42845031 42845276 -81230896 + B4A SINE B4 3 292 0 5 911 297 244 13 13 chr9 42845277 42845356 -81230816 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 911 248 139 0 0 chr9 42845735 42845771 -81230401 + MER46C DNA MER2_type 293 328 -10 5 911 445 262 190 80 chr9 42845796 42845926 -81230246 + MLT1A0 LTR MaLR 4 135 -230 5 911 666 37 0 0 chr9 42845926 42846007 -81230165 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 5 911 445 262 190 80 chr9 42846007 42846187 -81229985 + MLT1A0 LTR MaLR 136 347 -18 5 911 558 282 0 0 chr9 42846280 42846411 -81229761 + B1F1 SINE Alu 17 147 -2 5 911 327 259 53 44 chr9 42846413 42846526 -81229646 + PB1D9 SINE Alu 3 116 -4 5 911 505 223 26 9 chr9 42847785 42847898 -81228274 + B1F SINE Alu 28 142 -7 5 911 22 35 0 0 chr9 42849357 42849386 -81226786 + AT_rich Low_complexity Low_complexity 1 29 0 5 911 1173 113 0 46 chr9 42849617 42849797 -81226375 + B2_Mm2 SINE B2 10 180 -15 5 911 1276 61 0 7 chr9 42849797 42849945 -81226227 + B1_Mus1 SINE Alu 2 148 0 5 911 1173 113 0 46 chr9 42849945 42849959 -81226213 + B2_Mm2 SINE B2 181 194 -1 5 911 304 275 14 0 chr9 42850022 42850091 -81226081 + B1F1 SINE Alu 2 71 -78 5 911 456 161 0 0 chr9 42850125 42850206 -81225966 + GA-rich Low_complexity Low_complexity 4 84 0 5 911 414 0 0 0 chr9 42850850 42850896 -81225276 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 911 628 289 12 40 chr9 42850909 42851082 -81225090 - B3A SINE B2 -26 172 5 5 911 192 40 0 0 chr9 42851093 42851118 -81225054 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 5 911 1184 56 21 7 chr9 42851691 42851836 -81224336 + B1_Mm SINE Alu 1 147 0 5 911 451 259 65 22 chr9 42852712 42852850 -81223322 + B1F2 SINE Alu 1 144 -5 5 911 247 274 165 12 chr9 42852907 42852992 -81223180 - PB1D10 SINE Alu -11 106 9 5 911 769 195 240 6 chr9 42853771 42853946 -81222226 - B3 SINE B2 0 216 1 6 911 1120 198 25 13 chr9 42854010 42854245 -81221927 + MTD LTR MaLR 174 411 -8 6 911 1297 34 0 0 chr9 42854811 42854957 -81221215 - B1_Mm SINE Alu 0 147 2 6 911 427 289 160 38 chr9 42855032 42855244 -81220928 - B4A SINE B4 0 292 55 6 911 217 184 0 26 chr9 42855221 42855260 -81220912 - B2_Mm2 SINE B2 -118 77 40 6 911 351 44 0 0 chr9 42855629 42855674 -81220498 + (CAGG)n Simple_repeat Simple_repeat 2 46 0 6 911 262 345 40 46 chr9 42855699 42855851 -81220321 - B4A SINE B4 -92 200 50 6 911 212 314 75 19 chr9 42856029 42856136 -81220036 + B1F1 SINE Alu 29 141 -8 6 911 390 248 58 33 chr9 42856511 42856632 -81219540 + PB1 SINE Alu 1 124 -3 6 911 278 309 169 31 chr9 42857667 42857921 -81218251 - L1M5 LINE L1 -1053 5093 4805 6 911 369 281 22 45 chr9 42857925 42858059 -81218113 - L1MD3 LINE L1 -481 7514 7384 6 911 656 200 9 9 chr9 42858070 42858186 -81217986 + B1_Mus1 SINE Alu 1 116 -32 6 911 392 260 98 45 chr9 42858221 42858354 -81217818 + RSINE1 SINE B4 3 142 -23 6 911 462 36 0 0 chr9 42858359 42858415 -81217757 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 911 297 0 0 0 chr9 42858415 42858447 -81217725 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 911 774 238 26 5 chr9 42858599 42858793 -81217379 - L1MD3 LINE L1 -962 7033 6836 6 911 1056 285 103 96 chr9 42858959 42859262 -81216910 - L1M5 LINE L1 -2770 3376 3080 6 911 207 0 0 0 chr9 42859262 42859285 -81216887 + (TGG)n Simple_repeat Simple_repeat 1 23 0 6 911 1056 285 103 96 chr9 42859285 42859910 -81216262 - L1M5 LINE L1 -3067 3079 2441 6 911 35 41 0 0 chr9 42860015 42860064 -81216108 + AT_rich Low_complexity Low_complexity 1 49 0 6 911 234 0 0 0 chr9 42860066 42860092 -81216080 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 911 567 155 0 0 chr9 42860099 42860183 -81215989 - B1_Mus1 SINE Alu -56 92 9 6 911 189 0 0 0 chr9 42860436 42860457 -81215715 + (A)n Simple_repeat Simple_repeat 1 21 0 6 113 881 300 100 4 chr9 42860487 42860728 -81215444 + B4 SINE B4 22 285 -7 6 912 404 295 74 15 chr9 42860768 42860971 -81215201 - L1M5 LINE L1 -3754 2392 2178 6 912 281 318 0 0 chr9 42860977 42861043 -81215129 - ID4_ SINE ID -4 79 14 6 912 448 324 0 0 chr9 42861056 42861164 -81215008 - PB1D10 SINE Alu -5 112 5 6 912 234 91 0 0 chr9 42861175 42861208 -81214964 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 912 188 372 60 40 chr9 42861852 42862051 -81214121 - L2a LINE L2 -285 3141 2939 6 912 451 243 0 53 chr9 42862152 42862265 -81213907 + PB1D10 SINE Alu 4 110 -7 6 912 719 165 220 33 chr9 42862273 42862455 -81213717 + B3 SINE B2 1 216 0 6 912 1256 81 0 0 chr9 42862474 42862622 -81213550 + B1_Mus1 SINE Alu 1 148 0 6 912 210 37 0 0 chr9 42862626 42862653 -81213519 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 6 912 33387 78 20 11 chr9 42862918 42868236 -81207936 + L1Md_F2 LINE L1 217 5586 -297 6 912 8193 54 20 6 chr9 42868236 42869218 -81206954 + L1Md_F2 LINE L1 5587 6582 0 6 912 1203 44 0 0 chr9 42869346 42869481 -81206691 + B1_Mus2 SINE Alu 4 138 -9 6 912 324 0 0 0 chr9 42869481 42869517 -81206655 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 912 396 194 39 88 chr9 42869517 42869619 -81206553 - B1F SINE Alu -12 137 41 6 912 275 312 161 23 chr9 42870870 42871071 -81205101 - MIRb SINE MIR 0 262 42 6 912 1189 179 43 0 chr9 42871089 42871296 -81204876 - B3 SINE B2 0 216 1 6 912 405 0 0 0 chr9 42871359 42871404 -81204768 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 912 732 271 20 69 chr9 42871404 42871600 -81204572 - B3 SINE B2 -29 187 1 6 912 588 211 57 0 chr9 42871925 42872048 -81204124 + B1_Mur4 SINE Alu 6 135 -15 6 912 335 173 39 0 chr9 42872053 42872105 -81204067 - B1F1 SINE Alu -86 63 10 6 912 189 0 0 0 chr9 42872120 42872141 -81204031 + (A)n Simple_repeat Simple_repeat 1 21 0 6 912 537 275 36 0 chr9 42872399 42872537 -81203635 + RSINE1 SINE B4 8 150 -15 6 912 629 262 46 113 chr9 42872921 42873115 -81203057 + B3 SINE B2 2 182 -34 6 912 222 135 19 37 chr9 42873710 42873764 -81202408 + T-rich Low_complexity Low_complexity 2 54 0 6 912 897 27 0 0 chr9 42873769 42873879 -81202293 - B1_Mus1 SINE Alu 0 148 39 6 912 610 309 22 47 chr9 42874003 42874281 -81201891 + B4A SINE B4 4 274 -18 6 912 369 0 0 0 chr9 42874286 42874327 -81201845 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 912 801 266 202 17 chr9 42874440 42875119 -81201053 + L1ME1 LINE L1 5209 6026 -138 6 912 468 169 37 12 chr9 42875139 42875232 -81200940 - PB1D7 SINE Alu -12 108 13 6 912 251 356 11 0 chr9 42875242 42875332 -81200840 + L1MA10 LINE L1 6203 6293 -41 6 912 1132 99 123 0 chr9 42875386 42875557 -81200615 + B2_Mm1t SINE B2 2 193 0 6 912 210 71 0 0 chr9 42875557 42875585 -81200587 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 6 912 843 312 12 43 chr9 42875586 42875844 -81200328 + B4 SINE B4 43 292 0 6 912 244 336 53 26 chr9 42875954 42876067 -81200105 + PB1D10 SINE Alu 1 116 -1 6 912 889 190 81 23 chr9 42876076 42876248 -81199924 + B3 SINE B2 1 182 -34 6 912 381 261 70 115 chr9 42876337 42876585 -81199587 + B4A SINE B4 3 229 -63 6 912 368 288 243 8 chr9 42876592 42876827 -81199345 + B4A SINE B4 3 292 0 6 912 255 316 13 38 chr9 42878314 42878393 -81197779 + ID4_ SINE ID 7 83 0 6 912 279 0 0 0 chr9 42879291 42879322 -81196850 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 6 912 234 0 0 0 chr9 42880494 42880520 -81195652 + (T)n Simple_repeat Simple_repeat 1 26 0 6 912 998 84 0 0 chr9 42880520 42880651 -81195521 - B1_Mus1 SINE Alu 0 148 18 6 912 451 256 173 14 chr9 42881294 42881433 -81194739 + RSINE1 SINE B4 2 162 -3 6 912 325 241 103 0 chr9 42881560 42881647 -81194525 + B1F2 SINE Alu 33 128 -21 6 912 510 371 0 13 chr9 42881709 42881862 -81194310 + RSINE1 SINE B4 14 164 -1 6 912 479 214 164 82 chr9 42881893 42882137 -81194035 + L1MC3 LINE L1 5677 5940 -2055 6 912 1057 24 0 0 chr9 42882184 42882310 -81193862 + B1_Mus2 SINE Alu 17 142 -5 6 912 189 0 0 0 chr9 42882312 42882333 -81193839 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 912 292 247 25 0 chr9 42882345 42882426 -81193746 + L1MC3 LINE L1 6023 6105 -1680 6 912 263 319 16 78 chr9 42882448 42882577 -81193595 + PB1 SINE Alu 1 121 -6 6 912 304 232 11 79 chr9 42882495 42882584 -81193588 + ID_B1 SINE B4 139 221 -3 6 912 248 207 34 17 chr9 42882721 42882780 -81193392 + L1MC3 LINE L1 6367 6426 -1456 6 912 715 221 113 81 chr9 42883292 42883443 -81192729 + L1MC3 LINE L1 7360 7532 -253 6 912 2106 159 74 40 chr9 42883443 42883822 -81192350 + ORR1B1 LTR MaLR 3 394 0 6 912 715 221 113 81 chr9 42883822 42883980 -81192192 + L1MC3 LINE L1 7533 7679 -106 6 912 1188 76 0 14 chr9 42883990 42884136 -81192036 + B1_Mus1 SINE Alu 3 146 -2 6 912 189 94 0 0 chr9 42884216 42884248 -81191924 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 6 912 242 286 18 117 chr9 42885171 42885282 -81190890 + B1F1 SINE Alu 12 111 -38 6 912 219 36 0 0 chr9 42885458 42885486 -81190686 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 6 912 347 228 11 0 chr9 42885487 42885579 -81190593 + (CATA)n Simple_repeat Simple_repeat 2 94 0 6 912 258 333 0 12 chr9 42885650 42885732 -81190440 - MIRb SINE MIR -155 113 33 6 912 535 331 0 0 chr9 42885807 42885937 -81190235 + B1F1 SINE Alu 1 130 -19 6 912 528 146 0 0 chr9 42885943 42886032 -81190140 + (CATA)n Simple_repeat Simple_repeat 2 90 0 6 912 792 219 14 0 chr9 42886052 42886198 -81189974 + B1_Mur4 SINE Alu 2 149 -1 6 912 1343 214 131 3 chr9 42886698 42887026 -81189146 + MTE2b LTR MaLR 8 377 -2 6 912 324 168 204 53 chr9 42887114 42887227 -81188945 - RMER15 LTR ERVL -14 561 432 6 912 257 279 0 0 chr9 42887394 42887455 -81188717 - PB1D10 SINE Alu -7 110 50 6 912 247 321 9 36 chr9 42887499 42887609 -81188563 - Lx8 LINE L1 -333 7140 7034 6 912 523 288 45 6 chr9 42887750 42887907 -81188265 + RSINE1 SINE B4 1 163 -2 6 912 1469 82 16 0 chr9 42888295 42888479 -81187693 - B2_Mm2 SINE B2 -7 188 2 6 912 243 301 21 41 chr9 42888935 42889032 -81187140 + GA-rich Low_complexity Low_complexity 2 96 0 6 912 229 268 42 0 chr9 42890203 42890274 -81185898 + ID4_ SINE ID 2 75 -8 6 912 286 267 79 34 chr9 42890287 42890376 -81185796 - ID_B1 SINE B4 -24 200 108 6 912 366 223 38 19 chr9 42890396 42890501 -81185671 - B1F SINE Alu -1 148 42 6 912 714 194 0 48 chr9 42890947 42891093 -81185079 + B1_Mur4 SINE Alu 11 149 -1 6 912 258 105 0 0 chr9 42891121 42891159 -81185013 + (GGGGA)n Simple_repeat Simple_repeat 3 40 0 6 912 876 145 215 0 chr9 42891318 42891504 -81184668 + URR1A DNA MER1_type 1 226 0 6 912 495 306 125 44 chr9 42891962 42892465 -81183707 - Tigger13a DNA MER2_type -6 765 222 6 912 349 267 0 0 chr9 42892824 42892899 -81183273 + RSINE1 SINE B4 4 78 -87 6 912 290 283 49 29 chr9 42892965 42893067 -81183105 + PB1D10 SINE Alu 6 109 -8 6 912 31 0 0 0 chr9 42893075 42893106 -81183066 + AT_rich Low_complexity Low_complexity 1 31 0 6 912 236 294 58 23 chr9 42893511 42893598 -81182574 + MLT1F LTR MaLR 146 235 -360 6 912 299 347 72 31 chr9 42893629 42893852 -81182320 + MLT1F LTR MaLR 247 478 -70 6 912 394 286 154 6 chr9 42893972 42894134 -81182038 + B3A SINE B2 3 188 -10 6 912 418 277 40 0 chr9 42894137 42894238 -81181934 + PB1D10 SINE Alu 1 105 -12 6 912 1639 41 0 5 chr9 42894252 42894446 -81181726 + B2_Mm2 SINE B2 1 193 -2 6 912 473 187 51 2 chr9 42894507 42894645 -81181527 + MER3 DNA MER1_type 18 161 -48 6 912 726 167 33 7 chr9 42895234 42895385 -81180787 - B3 SINE B2 -7 209 55 7 912 321 240 110 0 chr9 42895485 42895585 -81180587 - PB1D7 SINE Alu -7 113 3 7 912 488 198 47 144 chr9 42896601 42896733 -81179439 + B3A SINE B2 74 196 -2 7 912 353 296 185 0 chr9 42897125 42897260 -81178912 + RSINE1 SINE B4 4 163 -2 7 912 384 152 0 0 chr9 42897261 42897327 -81178845 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 912 636 271 14 32 chr9 42897443 42897660 -81178512 + B3 SINE B2 1 213 -3 7 912 22 35 0 0 chr9 42897677 42897706 -81178466 + AT_rich Low_complexity Low_complexity 1 29 0 7 912 332 222 0 65 chr9 42897769 42897846 -81178326 - ID4_ SINE ID -10 73 2 7 912 237 33 0 0 chr9 42898262 42898292 -81177880 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 912 813 213 115 0 chr9 42898424 42898607 -81177565 + B3 SINE B2 2 205 -11 7 912 21 0 0 0 chr9 42898768 42898789 -81177383 + AT_rich Low_complexity Low_complexity 1 21 0 7 912 243 253 0 0 chr9 42898973 42899043 -81177129 + ID2 SINE ID 25 94 -58 7 912 498 241 71 21 chr9 42899223 42899363 -81176809 + B1_Mur1 SINE Alu 1 147 -2 7 912 380 221 41 66 chr9 42899624 42899732 -81176440 + ID_B1 SINE B4 84 189 -35 7 912 198 0 0 0 chr9 42899732 42899754 -81176418 + (G)n Simple_repeat Simple_repeat 1 22 0 7 912 380 221 41 66 chr9 42899754 42899766 -81176406 + ID_B1 SINE B4 190 201 -23 7 912 21 82 0 0 chr9 42900021 42900070 -81176102 + AT_rich Low_complexity Low_complexity 1 49 0 7 912 763 196 21 14 chr9 42900223 42900368 -81175804 - B1_Mm SINE Alu -1 146 1 7 912 239 248 145 94 chr9 42900789 42900806 -81175366 + B4 SINE B4 75 219 -73 7 912 627 157 107 0 chr9 42900806 42900927 -81175245 + B1_Mur3 SINE Alu 9 142 -7 7 912 444 51 0 0 chr9 42901550 42901609 -81174563 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 912 609 40 0 0 chr9 42902220 42902296 -81173876 + (TCC)n Simple_repeat Simple_repeat 1 76 0 7 912 973 128 7 7 chr9 42902932 42903081 -81173091 + B1_Mur3 SINE Alu 1 149 0 7 912 248 316 39 48 chr9 42903101 42903204 -81172968 + MLT1I LTR MaLR 170 271 -140 7 912 240 323 15 0 chr9 42903375 42903440 -81172732 + B1_Mus2 SINE Alu 17 82 -65 7 912 210 37 0 0 chr9 42903445 42903472 -81172700 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 7 912 435 184 0 0 chr9 42903472 42903559 -81172613 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 7 912 378 0 0 0 chr9 42903561 42903603 -81172569 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 7 912 396 272 162 0 chr9 42903846 42903982 -81172190 - RSINE1 SINE B4 -5 160 3 7 912 607 240 114 50 chr9 42903983 42904185 -81171987 - B4A SINE B4 -77 215 1 7 912 28 48 0 0 chr9 42904855 42904897 -81171275 + AT_rich Low_complexity Low_complexity 1 42 0 7 912 1629 37 11 0 chr9 42904897 42905088 -81171084 + B2_Mm1a SINE B2 1 193 0 7 912 37 0 0 0 chr9 42905104 42905141 -81171031 + AT_rich Low_complexity Low_complexity 1 37 0 7 912 486 266 0 0 chr9 42905254 42905363 -81170809 - PB1D10 SINE Alu 0 117 9 7 912 484 219 78 19 chr9 42906042 42906196 -81169976 - B3A SINE B2 -33 165 3 7 912 294 29 0 0 chr9 42907325 42907360 -81168812 + (T)n Simple_repeat Simple_repeat 1 35 0 7 912 774 152 20 40 chr9 42907438 42907589 -81168583 + B1_Mus1 SINE Alu 1 148 0 7 912 216 0 0 0 chr9 42907716 42907740 -81168432 + (TAA)n Simple_repeat Simple_repeat 3 26 0 7 912 1311 20 0 0 chr9 42909319 42909466 -81166706 + B1_Mm SINE Alu 1 147 0 7 912 263 49 24 0 chr9 42909470 42909511 -81166661 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 7 912 690 192 134 48 chr9 42909539 42909725 -81166447 + B3 SINE B2 15 216 0 7 912 201 102 82 0 chr9 42909732 42909781 -81166391 + A-rich Low_complexity Low_complexity 2 54 0 7 912 353 264 12 100 chr9 42909807 42909835 -81166337 + ID_B1 SINE B4 72 217 -7 7 912 644 169 15 15 chr9 42909835 42909967 -81166205 + B1_Mur4 SINE Alu 12 143 -7 7 912 1343 95 0 21 chr9 42910893 42911087 -81165085 + B2_Mm2 SINE B2 2 191 -4 7 912 779 155 31 0 chr9 42911114 42911243 -81164929 + B1_Mus1 SINE Alu 5 137 -11 7 912 357 239 46 107 chr9 42911423 42911554 -81164618 + B3A SINE B2 1 123 -72 7 912 231 36 0 0 chr9 42912327 42912355 -81163817 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 912 213 39 0 0 chr9 42912626 42912652 -81163520 + (A)n Simple_repeat Simple_repeat 1 26 0 7 912 21 0 0 0 chr9 42914137 42914158 -81162014 + GC_rich Low_complexity Low_complexity 1 21 0 7 912 306 0 0 0 chr9 42914632 42914666 -81161506 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 912 637 234 36 7 chr9 42916314 42916452 -81159720 + B1F SINE Alu 1 142 -7 7 912 258 228 0 0 chr9 42916461 42916518 -81159654 + ID2 SINE ID 2 58 -25 7 912 23 0 0 0 chr9 42917056 42917079 -81159093 + AT_rich Low_complexity Low_complexity 1 23 0 7 912 483 82 0 14 chr9 42917370 42917444 -81158728 + BC1_Mm scRNA scRNA 23 95 -57 7 912 444 255 18 9 chr9 42917841 42917952 -81158220 + PB1D10 SINE Alu 1 112 -5 7 912 804 128 0 0 chr9 42917998 42918131 -81158041 + (GGAA)n Simple_repeat Simple_repeat 3 135 0 7 912 765 264 282 0 chr9 42918408 42918847 -81157325 + MER68 LTR ERVL 1 563 0 7 912 458 228 61 0 chr9 42920093 42920207 -81155965 + ID_B1 SINE B4 103 223 -1 7 912 275 243 26 120 chr9 42920256 42920373 -81155799 - B1F SINE Alu 0 117 12 7 912 225 221 26 105 chr9 42920803 42920814 -81155358 + ID_B1 SINE B4 155 219 0 7 912 254 250 0 0 chr9 42920814 42920874 -81155298 + PB1D7 SINE Alu 58 120 0 7 912 461 234 69 15 chr9 42920887 42921017 -81155155 + B1F1 SINE Alu 12 148 -1 7 912 213 121 0 0 chr9 42921049 42921082 -81155090 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 7 912 1074 94 6 12 chr9 42921082 42921254 -81154918 + (GAGAA)n Simple_repeat Simple_repeat 4 174 0 7 912 246 268 54 40 chr9 42921266 42921340 -81154832 + ID SINE ID 15 89 -135 7 912 270 262 44 0 chr9 42921273 42921352 -81154820 + ID4 SINE ID 18 103 -49 7 912 480 260 23 61 chr9 42922145 42922276 -81153896 + B1F2 SINE Alu 1 126 -23 7 912 301 254 0 0 chr9 42922290 42922353 -81153819 + tRNA-Ala-GCA tRNA tRNA 2 64 -11 7 912 270 0 0 0 chr9 42922355 42922385 -81153787 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 912 486 146 0 0 chr9 42922386 42922468 -81153704 + (CACG)n Simple_repeat Simple_repeat 1 82 0 7 912 1694 11 11 0 chr9 42922545 42922734 -81153438 + B2_Mm1t SINE B2 3 193 0 7 912 446 224 132 20 chr9 42922736 42922890 -81153282 + B4 SINE B4 82 281 -11 7 912 204 111 0 0 chr9 42922890 42922926 -81153246 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 912 300 273 52 115 chr9 42923230 42923254 -81152918 + B4A SINE B4 72 157 -135 7 912 506 192 23 8 chr9 42923254 42923385 -81152787 + B1F2 SINE Alu 9 141 -8 7 912 300 273 52 115 chr9 42923385 42923404 -81152768 + B4A SINE B4 158 234 -58 7 912 226 292 29 44 chr9 42924844 42924912 -81151260 + ID4 SINE ID 7 73 -10 7 912 599 240 93 0 chr9 42925135 42925318 -81150854 + B3 SINE B2 1 200 -16 7 912 236 284 146 20 chr9 42925350 42925501 -81150671 + MIR SINE MIR 92 261 -1 7 912 274 270 0 0 chr9 42925536 42925599 -81150573 - ID4 SINE ID -16 67 5 7 912 368 242 112 31 chr9 42925675 42925773 -81150399 + PB1D10 SINE Alu 9 114 -3 7 912 1069 64 43 0 chr9 42925914 42926055 -81150117 + B1_Mm SINE Alu 1 147 0 7 912 213 103 0 0 chr9 42926057 42926076 -81150096 + (A)n Simple_repeat Simple_repeat 1 19 0 7 912 977 88 73 0 chr9 42926076 42926213 -81149959 + B1_Mus1 SINE Alu 2 148 0 7 912 213 103 0 0 chr9 42926213 42926232 -81149940 + (A)n Simple_repeat Simple_repeat 1 19 0 7 912 599 221 16 0 chr9 42926398 42926525 -81149647 + ID_B1 SINE B4 95 223 -1 7 912 221 232 143 0 chr9 42926974 42927030 -81149142 - ID4_ SINE ID -7 76 13 7 912 1224 55 0 0 chr9 42927530 42927676 -81148496 + B1_Mm SINE Alu 2 147 0 7 912 315 0 0 0 chr9 42927676 42927711 -81148461 + (A)n Simple_repeat Simple_repeat 1 35 0 7 912 903 184 48 62 chr9 42927786 42927929 -81148243 - B3 SINE B2 -10 206 57 7 912 1269 95 31 11 chr9 42927929 42928120 -81148052 + B2_Mm2 SINE B2 1 195 0 7 912 903 184 48 62 chr9 42928120 42928185 -81147987 - B3 SINE B2 -160 56 1 7 912 185 261 86 11 chr9 42928402 42928495 -81147677 - MIR SINE MIR -118 144 45 7 912 283 174 0 0 chr9 42928546 42928592 -81147580 + ID_B1 SINE B4 133 178 -46 7 912 1205 153 16 0 chr9 42928662 42928852 -81147320 + B2_Mm2 SINE B2 2 194 -1 7 912 458 0 0 34 chr9 42928852 42928911 -81147261 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 7 912 401 252 100 23 chr9 42929333 42929463 -81146709 - B1F1 SINE Alu -9 140 1 7 912 297 68 0 0 chr9 42929796 42929840 -81146332 + (CAA)n Simple_repeat Simple_repeat 2 45 0 7 912 195 162 0 0 chr9 42929913 42929950 -81146222 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 7 912 1657 37 0 0 chr9 42930009 42930198 -81145974 - B2_Mm1a SINE B2 -4 189 1 7 912 225 231 19 0 chr9 42930397 42930449 -81145723 - B1_Mur4 SINE Alu -60 90 38 7 912 246 143 41 0 chr9 42930713 42930762 -81145410 - FAM SINE Alu -83 228 178 7 912 258 81 0 0 chr9 42930767 42930804 -81145368 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 8 912 407 251 96 34 chr9 42931050 42931299 -81144873 + MTEa LTR MaLR 88 372 -7 8 912 604 213 3 92 chr9 42931402 42931562 -81144610 + B1F SINE Alu 1 149 0 8 912 182 167 0 125 chr9 42933392 42933440 -81142732 - MER5B DNA MER1_type -50 128 87 8 912 905 144 0 0 chr9 42933578 42933717 -81142455 + B1_Mus1 SINE Alu 8 146 -2 8 912 2053 83 18 66 chr9 42933740 42934075 -81142097 + ORR1A2 LTR MaLR 1 319 -8 8 912 404 250 29 20 chr9 42934078 42934180 -81141992 - PB1D7 SINE Alu -13 107 5 8 912 2160 155 36 21 chr9 42934218 42934606 -81141566 + ORR1B1 LTR MaLR 1 394 0 8 912 605 247 175 12 chr9 42934609 42934855 -81141317 - B4 SINE B4 -6 286 1 8 912 1072 102 90 0 chr9 42936286 42936452 -81139720 + B2_Mm2 SINE B2 1 181 -14 8 912 289 167 0 0 chr9 42936484 42936538 -81139634 + B2_Mm2 SINE B2 47 100 -95 8 912 587 82 0 23 chr9 42936589 42936676 -81139496 - B2_Mm2 SINE B2 -60 135 51 8 912 631 173 41 48 chr9 42936748 42936894 -81139278 - B1_Mus1 SINE Alu -1 147 3 8 912 343 247 13 0 chr9 42937384 42937461 -81138711 + PB1D7 SINE Alu 29 106 -14 8 912 324 172 11 22 chr9 42937462 42937551 -81138621 + GA-rich Low_complexity Low_complexity 3 90 0 8 912 669 257 109 19 chr9 42937571 42937743 -81138429 + B4A SINE B4 26 219 -73 8 912 207 0 0 0 chr9 42937743 42937766 -81138406 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 912 669 257 109 19 chr9 42937766 42937803 -81138369 + B4A SINE B4 220 254 -38 8 912 528 93 0 0 chr9 42937807 42937882 -81138290 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 912 480 349 19 5 chr9 42937970 42938183 -81137989 + MIRb SINE MIR 46 261 -7 8 912 633 222 81 76 chr9 42938885 42939070 -81137102 - B3A SINE B2 -4 194 9 8 912 762 164 43 7 chr9 42939125 42939285 -81136887 + B2_Mm2 SINE B2 1 196 -20 8 912 417 20 0 0 chr9 42939285 42939335 -81136837 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 8 912 1026 166 74 20 chr9 42939478 42939681 -81136491 - B3 SINE B2 0 216 3 8 912 306 273 217 43 chr9 42940320 42940504 -81135668 - ID_B1 SINE B4 -7 217 2 8 912 192 390 0 0 chr9 42940797 42940892 -81135280 + L2c LINE L2 3253 3347 -40 8 912 239 289 8 116 chr9 42941229 42941358 -81134814 - MT2B LTR ERVL -320 281 167 8 912 564 212 9 9 chr9 42941246 42941360 -81134812 - B1_Mur2 SINE Alu -35 114 1 8 912 569 256 141 5 chr9 42941431 42941616 -81134556 + ID_B1 SINE B4 13 222 -2 8 912 232 299 183 29 chr9 42941700 42942154 -81134018 + L2a LINE L2 2608 3182 -244 8 912 475 340 0 6 chr9 42942219 42942382 -81133790 - RSINE1 SINE B4 -2 163 2 8 912 208 375 71 19 chr9 42942815 42943020 -81133152 + MIRm SINE MIR 20 234 -34 8 912 398 289 13 66 chr9 42943818 42943970 -81132202 + B1F SINE Alu 5 148 -1 8 912 213 121 0 0 chr9 42943984 42944017 -81132155 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 8 912 236 208 28 0 chr9 42944040 42944112 -81132060 + L1ME4a LINE L1 6033 6106 -18 8 912 1243 96 11 17 chr9 42944149 42944329 -81131843 + B2_Mm1t SINE B2 1 179 -14 8 912 337 110 327 18 chr9 42944361 42944471 -81131701 + B2_Mm2 SINE B2 47 190 -5 8 912 1266 35 0 0 chr9 42944475 42944619 -81131553 + B1_Mm SINE Alu 4 147 0 8 912 1131 99 87 12 chr9 42944626 42944799 -81131373 + B2_Mm2 SINE B2 2 187 -8 8 912 557 266 0 73 chr9 42944833 42944983 -81131189 - RSINE1 SINE B4 -24 141 3 8 912 306 0 0 0 chr9 42945083 42945117 -81131055 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 912 2503 87 9 0 chr9 42945633 42945956 -81130216 + ORR1A2 LTR MaLR 2 327 0 8 912 522 0 0 0 chr9 42947094 42947152 -81129020 + (AATAG)n Simple_repeat Simple_repeat 4 61 0 8 912 975 33 0 16 chr9 42948616 42948739 -81127433 - B1_Mm SINE Alu 0 147 27 8 912 542 188 68 8 chr9 42948747 42948865 -81127307 - B3 SINE B2 -11 205 81 8 912 312 252 146 80 chr9 42949094 42949118 -81127054 - B4 SINE B4 -131 161 1 8 912 530 219 0 63 chr9 42949118 42949245 -81126927 - B3A SINE B2 -79 119 1 8 912 336 303 121 0 chr9 42949804 42949903 -81126269 - PB1 SINE Alu -12 115 5 8 912 200 135 0 26 chr9 42950898 42950936 -81125236 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 8 912 450 0 0 0 chr9 42951134 42951184 -81124988 + (CCTG)n Simple_repeat Simple_repeat 3 52 0 8 912 329 0 24 0 chr9 42952174 42952215 -81123957 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 912 315 203 76 152 chr9 42952960 42953105 -81123067 - B1F SINE Alu -15 134 1 8 912 714 246 43 62 chr9 42953105 42953186 -81122986 - ID SINE ID -147 77 1 8 912 1198 76 44 44 chr9 42953673 42953853 -81122319 - B2_Mm2 SINE B2 -14 181 2 8 912 366 291 8 64 chr9 42953870 42953995 -81122177 - PB1D9 SINE Alu -2 118 1 8 912 666 191 74 30 chr9 42954000 42954135 -81122037 - B1_Mur3 SINE Alu -4 145 5 8 912 631 102 34 0 chr9 42954535 42954623 -81121549 + B1_Mus2 SINE Alu 57 147 0 8 912 207 0 0 0 chr9 42954623 42954646 -81121526 + (A)n Simple_repeat Simple_repeat 1 23 0 8 912 1266 41 0 0 chr9 42955273 42955420 -81120752 + B1_Mus1 SINE Alu 2 148 0 8 912 1093 113 11 0 chr9 42955428 42955605 -81120567 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 8 912 257 208 18 36 chr9 42955655 42955710 -81120462 + RSINE1 SINE B4 13 66 -99 8 912 429 20 0 0 chr9 42955732 42955782 -81120390 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 912 279 79 0 0 chr9 42955782 42955820 -81120352 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 8 912 291 282 16 98 chr9 42955851 42955881 -81120291 + MT2B LTR ERVL 152 258 -338 8 912 466 230 0 0 chr9 42955881 42955968 -81120204 + B1F SINE Alu 19 105 -44 8 912 307 333 65 60 chr9 42955975 42956192 -81119980 - RMER15 LTR ERVL -11 564 347 8 912 387 0 0 0 chr9 42956232 42956275 -81119897 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 912 258 276 39 13 chr9 42956585 42956662 -81119510 + PB1D10 SINE Alu 12 90 -27 8 912 225 0 0 0 chr9 42956665 42956690 -81119482 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 8 912 585 228 110 0 chr9 42957391 42957518 -81118654 + B3A SINE B2 1 141 -57 8 912 219 384 0 29 chr9 42957529 42957631 -81118541 + MIRc SINE MIR 11 109 -159 8 912 782 156 50 0 chr9 42958804 42958945 -81117227 + B1_Mur4 SINE Alu 2 149 -1 8 912 555 98 0 0 chr9 42960214 42960306 -81115866 + (TC)n Simple_repeat Simple_repeat 1 92 0 8 912 765 299 5 27 chr9 42960856 42961076 -81115096 - ID_B1 SINE B4 -8 216 2 8 912 228 182 0 0 chr9 42961138 42961182 -81114990 + (CAT)n Simple_repeat Simple_repeat 1 44 0 8 912 271 253 0 0 chr9 42961867 42961946 -81114226 - B1F SINE Alu -8 141 34 8 912 257 256 207 21 chr9 42961989 42962016 -81114156 - B4A SINE B4 -46 246 151 8 912 531 167 62 0 chr9 42962016 42962112 -81114060 - PB1D7 SINE Alu -8 112 11 8 912 236 187 89 137 chr9 42962026 42962150 -81114022 - MT2B2 LTR ERVL -329 255 138 8 912 257 256 207 21 chr9 42962112 42962129 -81114043 - B4A SINE B4 -46 150 81 8 912 448 360 0 9 chr9 42962241 42962396 -81113776 - MIRb SINE MIR -107 161 10 8 912 429 95 0 0 chr9 42962842 42962905 -81113267 + (GGA)n Simple_repeat Simple_repeat 2 64 0 8 912 206 121 30 0 chr9 42962959 42962992 -81113180 + (GGGTG)n Simple_repeat Simple_repeat 4 37 0 8 912 323 272 95 51 chr9 42963279 42963484 -81112688 - MIR SINE MIR -62 206 9 8 912 245 280 28 132 chr9 42963791 42963810 -81112362 - MT2B2 LTR ERVL -293 291 167 8 912 528 246 0 25 chr9 42963810 42963931 -81112241 - PB1D7 SINE Alu 0 120 3 8 912 338 238 188 58 chr9 42963931 42963960 -81112212 - ID_B1 SINE B4 -118 106 60 8 912 432 208 78 19 chr9 42964255 42964358 -81111814 + PB1D9 SINE Alu 1 109 -11 8 912 207 183 0 53 chr9 42964382 42964457 -81111715 + GA-rich Low_complexity Low_complexity 3 73 0 8 912 220 350 68 29 chr9 42964944 42965047 -81111125 + ID_B1 SINE B4 15 121 -103 8 912 216 365 43 37 chr9 42965167 42965329 -81110843 - MIRc SINE MIR -35 233 71 8 912 514 314 127 73 chr9 42965393 42965819 -81110353 - Tigger15a DNA TcMar -36 679 231 8 912 339 323 0 20 chr9 42965863 42965964 -81110208 - PB1D10 SINE Alu -12 105 7 8 912 258 287 66 47 chr9 42965869 42965975 -81110197 - B4A SINE B4 -101 191 84 8 912 230 330 128 0 chr9 42966098 42966207 -81109965 - B1F2 SINE Alu -25 124 2 8 912 221 0 35 0 chr9 42966221 42966250 -81109922 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8 912 251 353 12 12 chr9 42966251 42966337 -81109835 - B4 SINE B4 -205 87 2 8 912 216 0 0 0 chr9 42966346 42966370 -81109802 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 8 912 1092 67 7 0 chr9 42966370 42966505 -81109667 - B1_Mm SINE Alu -11 136 1 8 912 725 167 8 23 chr9 42966561 42966690 -81109482 + B1_Mur3 SINE Alu 21 147 -2 8 912 294 300 89 0 chr9 42967198 42967288 -81108884 - ID_B1 SINE B4 -41 183 86 8 912 357 329 0 0 chr9 42967212 42967291 -81108881 - PB1D7 SINE Alu -40 80 2 8 912 300 287 41 31 chr9 42967514 42967528 -81108644 - BC1_Mm scRNA scRNA -54 98 1 8 912 432 241 0 0 chr9 42967528 42967611 -81108561 - ID SINE ID -141 83 1 8 912 268 238 136 12 chr9 42967626 42967707 -81108465 - MIRc SINE MIR -123 145 55 9 912 561 212 96 22 chr9 42967860 42967995 -81108177 + B1F1 SINE Alu 5 149 0 9 912 538 134 98 0 chr9 42968381 42968463 -81107709 + B1_Mur1 SINE Alu 49 138 -11 9 912 192 77 0 0 chr9 42968464 42968490 -81107682 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 912 614 64 0 0 chr9 42969343 42969421 -81106751 + B1_Mur4 SINE Alu 67 144 -6 9 912 861 103 0 0 chr9 42969426 42969552 -81106620 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 9 912 945 246 76 47 chr9 42969847 42970124 -81106048 + B4 SINE B4 4 288 -4 9 912 466 301 37 15 chr9 42971150 42971285 -81104887 - RSINE1 SINE B4 -20 145 8 9 912 445 340 27 17 chr9 42971286 42971439 -81104733 + ID_B1 SINE B4 62 214 -10 9 912 363 44 0 0 chr9 42971439 42971484 -81104688 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 9 912 511 212 190 124 chr9 42971489 42971763 -81104409 + B4A SINE B4 1 292 0 9 912 306 156 0 0 chr9 42971763 42971827 -81104345 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 912 1910 171 77 6 chr9 42971987 42972351 -81103821 + RMER4B LTR ERVK 17 406 -179 9 912 600 14 0 0 chr9 42972351 42972420 -81103752 + (TC)n Simple_repeat Simple_repeat 2 70 0 9 912 371 252 67 19 chr9 42972420 42972525 -81103647 - PB1D9 SINE Alu -9 111 2 9 912 283 212 188 0 chr9 42972537 42972617 -81103555 - B1_Mus2 SINE Alu -52 95 1 9 912 429 288 30 8 chr9 42973528 42973661 -81102511 + MIRb SINE MIR 101 236 -32 9 912 245 288 77 64 chr9 42973799 42973877 -81102295 - ID4_ SINE ID -3 80 2 9 912 194 0 39 0 chr9 42973888 42973914 -81102258 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 912 918 127 20 34 chr9 42973941 42974088 -81102084 - B1_Mus2 SINE Alu -1 146 2 9 912 314 359 19 13 chr9 42975293 42975451 -81100721 + MIRb SINE MIR 99 257 -11 9 912 186 143 0 0 chr9 42975613 42975648 -81100524 + (T)n Simple_repeat Simple_repeat 1 35 0 9 912 526 229 9 0 chr9 42975661 42975766 -81100406 - ID_B1 SINE B4 -9 215 110 9 912 768 248 110 35 chr9 42976475 42976730 -81099442 - B4A SINE B4 0 292 19 9 912 423 0 0 0 chr9 42976754 42976801 -81099371 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 9 912 1146 101 6 0 chr9 42976801 42976960 -81099212 - B2_Mm1a SINE B2 -33 160 1 9 912 253 325 38 0 chr9 42977034 42977114 -81099058 - ID SINE ID -141 83 1 9 912 410 228 3 116 chr9 42977139 42977257 -81098915 - PB1D10 SINE Alu -7 113 9 9 912 868 179 14 7 chr9 42977516 42977662 -81098510 - B1_Mur2 SINE Alu 0 149 3 9 912 30 77 0 0 chr9 42977662 42977727 -81098445 + AT_rich Low_complexity Low_complexity 1 65 0 9 912 767 100 124 8 chr9 42977728 42977849 -81098323 - B1_Mus2 SINE Alu -3 144 10 9 912 331 245 171 112 chr9 42977731 42977760 -81098412 - B4 SINE B4 -69 223 138 9 912 374 226 62 89 chr9 42977760 42977872 -81098300 - MT2B LTR ERVL -337 264 156 9 912 331 245 171 112 chr9 42977872 42977901 -81098271 - B4 SINE B4 -69 137 44 9 912 1203 68 0 0 chr9 42978090 42978237 -81097935 + B1_Mus2 SINE Alu 1 147 0 9 912 306 341 0 0 chr9 42978396 42978478 -81097694 - ID4_ SINE ID 0 83 2 9 912 354 286 50 16 chr9 42978492 42978613 -81097559 - B1F SINE Alu 0 149 25 9 912 421 206 98 0 chr9 42979433 42979525 -81096647 + ID_B1 SINE B4 124 224 0 9 912 458 298 57 6 chr9 42980450 42980609 -81095563 - MIR SINE MIR -60 202 36 9 912 407 265 0 19 chr9 42981366 42981470 -81094702 + ID_B1 SINE B4 116 217 -7 9 912 234 306 34 59 chr9 42981470 42981484 -81094688 + B1F2 SINE Alu 35 149 0 9 912 415 269 73 30 chr9 42981562 42981727 -81094445 - MIR3 SINE MIR -22 186 15 9 912 231 289 17 96 chr9 42981974 42982089 -81094083 + MamGypLTR1d LTR Gypsy 42 147 -666 9 912 317 270 21 13 chr9 42982111 42982217 -81093955 + MIR SINE MIR 20 129 -139 9 912 353 175 0 73 chr9 42982955 42983023 -81093149 - PB1D7 SINE Alu -10 110 48 9 912 418 274 27 36 chr9 42983781 42983891 -81092281 - PB1D10 SINE Alu -6 111 3 9 912 610 309 29 0 chr9 42983891 42983971 -81092201 - ID SINE ID -138 86 2 9 912 245 233 0 0 chr9 42984854 42984897 -81091275 + PB1D9 SINE Alu 2 44 -76 9 912 407 18 0 35 chr9 42984904 42984961 -81091211 + (CAA)n Simple_repeat Simple_repeat 2 56 0 9 912 382 259 124 9 chr9 42984963 42985076 -81091096 - ID_B1 SINE B4 -19 205 80 9 912 246 266 40 61 chr9 42985183 42985331 -81090841 + YREP_Mm Unknown Unknown 142 286 -1526 9 912 861 208 77 0 chr9 42985226 42985409 -81090763 - ID_B1 SINE B4 -6 218 22 9 912 228 295 26 0 chr9 42985622 42985658 -81090514 + RSINE1 SINE B4 86 121 -44 9 912 627 266 16 33 chr9 42985658 42985841 -81090331 + B3A SINE B2 2 181 -17 9 912 228 295 26 0 chr9 42985841 42985882 -81090290 + RSINE1 SINE B4 122 164 -1 9 912 429 180 124 0 chr9 42986749 42986838 -81089334 + B2_Mm2 SINE B2 3 102 -93 9 912 1320 152 4 30 chr9 42986847 42987078 -81089094 + URR1B DNA MER1_type 1 225 0 9 912 387 41 0 0 chr9 42987219 42987268 -81088904 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 912 840 20 0 0 chr9 42987999 42988097 -81088075 + (GGAGA)n Simple_repeat Simple_repeat 1 98 0 9 912 931 44 0 0 chr9 42988132 42988246 -81087926 - B1_Mus1 SINE Alu 0 148 35 9 912 285 192 62 37 chr9 42988190 42988271 -81087901 - 4.5SRNA scRNA scRNA -8 86 4 9 912 182 120 0 0 chr9 42988589 42988614 -81087558 + L2a LINE L2 3127 3151 -275 9 912 480 252 285 19 chr9 42988702 42988860 -81087312 - ID_B1 SINE B4 -23 201 2 9 912 542 235 8 17 chr9 42988885 42989002 -81087170 - PB1D10 SINE Alu -1 116 1 9 912 537 16 0 0 chr9 42989517 42989579 -81086593 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 912 481 247 24 110 chr9 42989580 42989744 -81086428 + B4A SINE B4 3 152 -140 9 912 21 0 0 0 chr9 42989750 42989771 -81086401 + GC_rich Low_complexity Low_complexity 1 21 0 9 912 480 217 11 0 chr9 42990749 42990841 -81085331 - B1F2 SINE Alu -56 93 1 9 912 198 0 0 0 chr9 42990901 42990923 -81085249 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 9 912 1110 97 0 0 chr9 42990923 42991068 -81085104 + B1_Mus1 SINE Alu 2 146 -2 9 912 26 0 0 0 chr9 42991138 42991164 -81085008 + AT_rich Low_complexity Low_complexity 1 26 0 9 912 563 269 31 0 chr9 42991172 42991302 -81084870 + ID_B1 SINE B4 81 214 -10 9 912 414 0 0 0 chr9 42991302 42991348 -81084824 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 912 333 0 0 0 chr9 42991353 42991390 -81084782 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 9 912 248 70 0 23 chr9 42991440 42991484 -81084688 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 912 844 39 0 0 chr9 42991484 42991587 -81084585 - B1_Mus2 SINE Alu -7 140 38 9 913 207 0 0 0 chr9 42993401 42993424 -81082748 + (CA)n Simple_repeat Simple_repeat 1 23 0 9 913 452 243 148 42 chr9 42993589 42993731 -81082441 + B3A SINE B2 1 157 -41 9 913 498 33 0 0 chr9 42993733 42993793 -81082379 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 913 480 35 0 0 chr9 42993804 42993862 -81082310 + (GA)n Simple_repeat Simple_repeat 1 58 0 9 913 1051 79 176 0 chr9 42993881 42994025 -81082147 + B2_Mm2 SINE B2 2 169 -26 9 913 1192 75 0 0 chr9 42994025 42994172 -81082000 + B1_Mus2 SINE Alu 1 147 0 9 913 1051 79 176 0 chr9 42994172 42994192 -81081980 + B2_Mm2 SINE B2 170 194 -1 9 913 218 32 32 0 chr9 42994192 42994223 -81081949 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 9 913 183 170 0 0 chr9 42994214 42994261 -81081911 + A-rich Low_complexity Low_complexity 2 48 0 9 913 210 162 0 26 chr9 42994650 42994688 -81081484 + L3 LINE CR1 4437 4473 -16 9 913 569 254 0 55 chr9 42994828 42994974 -81081198 + ID_B1 SINE B4 85 222 -2 9 913 23 0 0 0 chr9 42995487 42995510 -81080662 + AT_rich Low_complexity Low_complexity 1 23 0 9 913 291 243 25 108 chr9 42995551 42995671 -81080501 + MT2B LTR ERVL 146 255 -346 9 913 376 305 9 9 chr9 42995570 42995676 -81080496 + ID_B1 SINE B4 79 184 -40 9 913 216 211 18 55 chr9 42995697 42995752 -81080420 - MIR SINE MIR -65 143 91 9 913 237 139 0 0 chr9 42995992 42996035 -81080137 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 913 518 211 65 36 chr9 42996158 42996296 -81079876 - MIR SINE MIR -21 241 100 9 913 355 110 24 24 chr9 42998994 42999078 -81077094 + (TCTCTG)n Simple_repeat Simple_repeat 3 86 0 9 913 394 201 48 154 chr9 42999078 42999103 -81077069 - B4A SINE B4 -44 248 164 9 913 961 94 7 21 chr9 42999103 42999244 -81076928 - B1_Mur4 SINE Alu -3 147 9 9 913 394 201 48 154 chr9 42999244 42999266 -81076906 - B4A SINE B4 -44 163 81 9 913 2751 103 55 5 chr9 43000351 43000752 -81075420 + MTC LTR MaLR 1 421 0 1 913 468 0 0 0 chr9 43001048 43001100 -81075072 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 913 251 326 89 14 chr9 43001372 43001518 -81074654 - MIR3 SINE MIR -43 165 9 3 913 192 364 32 24 chr9 43001481 43001605 -81074567 + MIRb SINE MIR 93 217 -51 4 913 853 128 12 52 chr9 43001856 43001994 -81074178 + B2_Mm2 SINE B2 2 137 -58 5 913 234 0 0 0 chr9 43001994 43002020 -81074152 + (CAGA)n Simple_repeat Simple_repeat 4 29 0 6 913 853 128 12 52 chr9 43002020 43002054 -81074118 + B2_Mm2 SINE B2 138 166 -29 5 913 646 270 119 40 chr9 43002023 43002274 -81073898 + B4 SINE B4 22 292 0 7 913 414 241 0 0 chr9 43002276 43002355 -81073817 + ID4_ SINE ID 4 82 -1 8 913 774 67 0 0 chr9 43002515 43002620 -81073552 + (GA)n Simple_repeat Simple_repeat 2 106 0 9 913 700 224 19 13 chr9 43003340 43003494 -81072678 + B3 SINE B2 2 156 -60 1 913 806 204 7 13 chr9 43003507 43003656 -81072516 + B1_Mur2 SINE Alu 1 148 -1 1 913 343 174 29 0 chr9 43003806 43003875 -81072297 - B1F SINE Alu -12 137 67 1 913 1232 47 0 26 chr9 43003905 43004057 -81072115 - B1_Mus1 SINE Alu 0 148 1 1 913 1194 48 124 18 chr9 43004449 43004618 -81071554 - B2_Mm2 SINE B2 -7 188 2 1 913 341 198 139 0 chr9 43004918 43005004 -81071168 + B1F SINE Alu 42 139 -10 1 913 195 42 0 0 chr9 43005004 43005028 -81071144 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 1 913 239 281 0 0 chr9 43005039 43005096 -81071076 + ID4_ SINE ID 16 72 -11 1 913 1075 43 49 28 chr9 43005883 43006027 -81070145 + B1_Mus1 SINE Alu 2 148 0 1 913 721 127 0 0 chr9 43006069 43006179 -81069993 + B1_Mus1 SINE Alu 36 145 -3 1 913 383 295 45 23 chr9 43006311 43006443 -81069729 + RSINE1 SINE B4 31 165 0 2 913 513 208 33 158 chr9 43006505 43006625 -81069547 + B1F SINE Alu 21 141 -8 2 913 229 259 18 36 chr9 43006631 43006687 -81069485 + ID4 SINE ID 9 63 -20 2 913 225 0 0 0 chr9 43006688 43006713 -81069459 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 913 465 84 0 0 chr9 43006713 43006783 -81069389 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 913 930 128 7 28 chr9 43007587 43007732 -81068440 + B1_Mur4 SINE Alu 3 144 -6 2 913 306 251 55 5 chr9 43007768 43007867 -81068305 + B1F1 SINE Alu 3 101 -16 2 913 360 0 0 0 chr9 43009669 43009709 -81066463 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 913 437 302 35 21 chr9 43009779 43009921 -81066251 - B1F SINE Alu -5 144 1 2 913 314 255 0 125 chr9 43011493 43011605 -81064567 + PB1D7 SINE Alu 22 119 -1 2 913 180 313 67 42 chr9 43012110 43012230 -81063942 + MIRc SINE MIR 43 165 -103 3 913 23 78 0 0 chr9 43013976 43014027 -81062145 + GC_rich Low_complexity Low_complexity 1 51 0 3 913 232 268 23 23 chr9 43014311 43014399 -81061773 + MIRc SINE MIR 62 149 -119 3 913 762 93 0 0 chr9 43014914 43015022 -81061150 + (GGAA)n Simple_repeat Simple_repeat 4 111 0 3 913 1423 63 6 0 chr9 43015022 43015197 -81060975 + B2_Mm1a SINE B2 4 179 -14 3 913 249 83 0 0 chr9 43015302 43015338 -81060834 + (TTA)n Simple_repeat Simple_repeat 1 36 0 3 913 1073 119 31 36 chr9 43015488 43015639 -81060533 + B2_Mm2 SINE B2 1 157 -38 3 913 264 59 0 0 chr9 43015639 43015673 -81060499 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 913 1198 62 7 0 chr9 43015678 43015824 -81060348 + B1_Mus1 SINE Alu 1 147 -1 3 913 1467 74 16 0 chr9 43015830 43016019 -81060153 + B2_Mm1a SINE B2 1 192 -1 3 913 1073 119 31 36 chr9 43016019 43016046 -81060126 + B2_Mm2 SINE B2 166 190 -5 3 913 258 307 137 9 chr9 43016049 43016191 -81059981 - MIRb SINE MIR -88 180 15 4 913 465 279 319 9 chr9 43017307 43017517 -81058655 - B4 SINE B4 -17 275 1 4 913 186 71 0 0 chr9 43017536 43017564 -81058608 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 913 494 92 598 16 chr9 43017611 43017733 -81058439 + B2_Mm2 SINE B2 3 195 0 4 913 191 294 294 0 chr9 43017744 43017829 -81058343 - MIRb SINE MIR -109 159 50 4 913 405 0 0 0 chr9 43017838 43017883 -81058289 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 913 537 134 0 0 chr9 43017899 43018011 -81058161 + (GA)n Simple_repeat Simple_repeat 1 112 0 4 913 228 269 62 36 chr9 43020129 43020144 -81056028 + ID_B1 SINE B4 106 157 -67 4 913 333 275 21 62 chr9 43020144 43020175 -81055997 + B1F SINE Alu 55 80 -69 4 913 2046 125 72 0 chr9 43020175 43020480 -81055692 + ORR1A2 LTR MaLR 1 327 0 4 913 228 269 62 36 chr9 43020480 43020545 -81055627 + ID_B1 SINE B4 158 219 -5 4 913 299 25 25 0 chr9 43021401 43021441 -81054731 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 913 616 69 9 105 chr9 43021442 43021556 -81054616 - B1_Mus2 SINE Alu -5 142 40 5 913 246 240 52 26 chr9 43021489 43021566 -81054606 - RLTR25B LTR ERVK -519 509 431 5 913 576 180 114 23 chr9 43021571 43021702 -81054470 - B1_Mur4 SINE Alu -6 144 2 5 913 740 243 0 0 chr9 43022041 43022189 -81053983 - B1_Mur2 SINE Alu -1 148 1 5 913 491 235 0 0 chr9 43022202 43022300 -81053872 - B1F SINE Alu -30 119 22 5 913 305 301 195 53 chr9 43022502 43022825 -81053347 + MLT2D LTR ERVL 39 407 -7 5 913 303 237 92 0 chr9 43023129 43023205 -81052967 - PB1D7 SINE Alu -37 83 1 5 913 524 206 123 51 chr9 43023307 43023445 -81052727 - B1F1 SINE Alu 0 149 2 5 913 7251 152 54 41 chr9 43023616 43025223 -81050949 - ORR1B1-int LTR MaLR -68 1895 284 5 913 1907 183 53 1 chr9 43025640 43026053 -81050119 - ORR1B1-int LTR MaLR -1344 448 3 5 913 344 127 0 0 chr9 43026062 43026117 -81050055 - ORR1B1 LTR MaLR 0 394 340 5 913 238 276 78 106 chr9 43026125 43026158 -81050014 - ORR1B1 LTR MaLR -2 377 339 6 913 1183 55 14 0 chr9 43026158 43026303 -81049869 - B1_Mm SINE Alu 0 147 1 6 913 1894 95 44 44 chr9 43026303 43026622 -81049550 - ORR1B1 LTR MaLR -41 353 35 6 913 1478 165 82 0 chr9 43026616 43026883 -81049289 - ORR1B1 LTR MaLR -105 289 1 6 913 281 348 17 0 chr9 43026986 43027101 -81049071 - PB1D10 SINE Alu 0 117 1 6 913 1811 141 147 18 chr9 43027194 43027534 -81048638 + ORR1C2 LTR MaLR 1 384 0 6 913 526 181 91 45 chr9 43027941 43028051 -81048121 - PB1D10 SINE Alu -2 115 1 6 913 622 278 0 0 chr9 43028062 43028206 -81047966 - ID_B1 SINE B4 0 224 81 6 913 567 210 221 6 chr9 43028274 43028437 -81047735 - B3A SINE B2 0 198 1 6 913 511 180 191 32 chr9 43028437 43028563 -81047609 - B1_Mur1 SINE Alu -3 146 1 6 913 194 0 39 0 chr9 43028569 43028595 -81047577 + (TTA)n Simple_repeat Simple_repeat 2 28 0 6 913 340 280 70 0 chr9 43029158 43029258 -81046914 - B1F2 SINE Alu -40 109 3 7 913 215 363 85 39 chr9 43029258 43029289 -81046883 - B4A SINE B4 -194 98 62 7 913 236 366 0 0 chr9 43029350 43029432 -81046740 - ID4_ SINE ID 0 83 2 7 913 455 219 132 57 chr9 43029440 43029621 -81046551 - B2_Mm2 SINE B2 -1 215 1 7 913 470 264 125 54 chr9 43029638 43029822 -81046350 - B3A SINE B2 -1 197 1 7 913 1228 114 11 6 chr9 43031346 43031522 -81044650 + B2_Mm1t SINE B2 3 179 -14 7 913 461 19 0 5 chr9 43031550 43031615 -81044557 + B2_Mm2 SINE B2 47 109 -107 7 913 356 0 0 22 chr9 43033984 43034029 -81042143 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 913 1047 91 7 7 chr9 43034477 43034621 -81041551 - B1_Mus1 SINE Alu 0 148 5 7 913 1144 236 70 4 chr9 43035312 43035395 -81040777 + B4A SINE B4 1 84 -208 7 913 468 0 0 0 chr9 43035395 43035447 -81040725 + (CAA)n Simple_repeat Simple_repeat 2 53 0 8 913 1144 236 70 4 chr9 43035447 43035635 -81040537 + B4A SINE B4 85 288 -4 7 913 240 111 0 0 chr9 43035694 43035739 -81040433 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 8 913 182 271 55 66 chr9 43035997 43036088 -81040084 - MIR SINE MIR -153 109 20 8 913 588 14 0 0 chr9 43036292 43036361 -81039811 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 8 913 182 309 36 0 chr9 43036366 43036421 -81039751 - MIRc SINE MIR -168 100 44 8 913 1598 47 16 0 chr9 43036608 43036798 -81039374 - B2_Mm2 SINE B2 -1 194 2 8 913 191 242 129 0 chr9 43038881 43038943 -81037229 - MIRm SINE MIR -180 96 27 8 913 495 145 0 0 chr9 43039854 43039937 -81036235 + (TG)n Simple_repeat Simple_repeat 1 83 0 8 913 180 0 0 0 chr9 43040727 43040747 -81035425 + (A)n Simple_repeat Simple_repeat 1 20 0 8 913 192 296 19 0 chr9 43040891 43040945 -81035227 - MIRc SINE MIR -144 124 70 8 913 21 36 0 0 chr9 43040945 43040973 -81035199 + AT_rich Low_complexity Low_complexity 1 28 0 9 913 1209 251 17 27 chr9 43041844 43042139 -81034033 + B4A SINE B4 1 292 0 9 913 228 139 0 0 chr9 43043077 43043113 -81033059 + tRNA-Ala-GCY_ tRNA tRNA 33 68 -7 9 913 823 256 20 0 chr9 43043167 43043366 -81032806 - ID_B1 SINE B4 -21 203 1 9 913 2403 164 126 10 chr9 43044008 43044518 -81031654 + RMER15 LTR ERVL 7 575 0 9 913 313 240 122 28 chr9 43044845 43044952 -81031220 - MIR SINE MIR -48 214 98 9 913 240 111 0 0 chr9 43046249 43046285 -81029887 + (GGGGA)n Simple_repeat Simple_repeat 3 38 0 9 913 305 219 122 0 chr9 43046409 43046491 -81029681 - PB1D7 SINE Alu -11 109 18 9 913 399 68 0 0 chr9 43046613 43046672 -81029500 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 913 267 103 0 0 chr9 43047573 43047612 -81028560 + (CAG)n Simple_repeat Simple_repeat 2 40 0 9 913 24 0 0 0 chr9 43047656 43047680 -81028492 + GC_rich Low_complexity Low_complexity 1 24 0 1 913 2122 43 109 18 chr9 43048973 43049181 -81026991 + L1Md_F2 LINE L1 6273 6479 -103 1 913 183 42 0 0 chr9 43049181 43049205 -81026967 + (TGGG)n Simple_repeat Simple_repeat 4 27 0 1 913 2122 43 109 18 chr9 43049205 43049279 -81026893 + L1Md_F2 LINE L1 6480 6579 -3 1 913 596 152 8 85 chr9 43049971 43050100 -81026072 - PB1D9 SINE Alu 0 120 2 1 913 365 231 102 88 chr9 43050330 43050458 -81025714 - PB1D10 SINE Alu -1 126 1 1 913 315 330 114 19 chr9 43050475 43050685 -81025487 - MIRb SINE MIR -38 230 1 1 913 185 393 58 53 chr9 43050765 43050972 -81025200 - L3b LINE CR1 -37 445 238 1 913 395 201 254 67 chr9 43051163 43051328 -81024844 - B3A SINE B2 -2 196 1 1 913 1069 103 42 18 chr9 43051357 43051525 -81024647 + B2_Mm2 SINE B2 2 173 -22 1 913 416 267 97 62 chr9 43052558 43052672 -81023500 + RSINE1 SINE B4 16 141 -24 1 913 405 0 0 0 chr9 43052672 43052717 -81023455 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 913 423 0 0 0 chr9 43052717 43052763 -81023409 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 913 416 267 97 62 chr9 43052763 43052791 -81023381 + RSINE1 SINE B4 142 163 -2 1 913 257 286 337 60 chr9 43053107 43053312 -81022860 - L2 LINE L2 -493 2926 2665 1 913 209 33 0 32 chr9 43054194 43054225 -81021947 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1 913 222 301 35 46 chr9 43054586 43054673 -81021499 - PB1D7 SINE Alu -2 118 33 1 913 394 196 9 9 chr9 43054673 43054781 -81021391 + CT-rich Low_complexity Low_complexity 4 111 0 1 913 328 297 189 0 chr9 43054956 43055104 -81021068 - L1MC1 LINE L1 -155 6178 6003 1 913 182 150 25 0 chr9 43055455 43055495 -81020677 + CT-rich Low_complexity Low_complexity 4 44 0 1 913 471 270 84 35 chr9 43055505 43055647 -81020525 - B1F SINE Alu 0 149 1 1 913 260 299 35 0 chr9 43055699 43055786 -81020386 - PB1D10 SINE Alu -5 112 23 1 913 381 274 85 0 chr9 43055819 43055925 -81020247 - ID_B1 SINE B4 -23 201 87 1 913 200 154 19 0 chr9 43055935 43055987 -81020185 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 913 315 0 0 0 chr9 43056141 43056176 -81019996 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 913 589 203 69 15 chr9 43056176 43056306 -81019866 - RSINE1 SINE B4 -25 140 4 1 913 217 355 55 18 chr9 43056308 43056417 -81019755 - MIRb SINE MIR -66 202 90 1 913 257 279 33 0 chr9 43056950 43057011 -81019161 - ID4 SINE ID -16 67 5 1 913 351 177 138 12 chr9 43057019 43057099 -81019073 - PB1 SINE Alu -2 125 36 1 913 557 211 111 15 chr9 43057176 43057311 -81018861 - B1F SINE Alu -1 148 1 1 913 587 285 4 165 chr9 43057621 43057722 -81018450 - B4A SINE B4 -1 291 221 1 913 735 272 12 0 chr9 43057722 43057884 -81018288 - RSINE1 SINE B4 0 165 2 1 913 587 285 4 165 chr9 43057884 43058030 -81018142 - B4A SINE B4 -72 220 84 1 913 466 257 115 37 chr9 43058064 43058242 -81017930 - B4A SINE B4 -69 223 12 1 913 233 200 185 0 chr9 43058279 43058344 -81017828 + PB1D10 SINE Alu 36 112 -5 1 913 582 161 8 43 chr9 43058344 43058461 -81017711 + PB1D7 SINE Alu 1 113 -7 1 913 219 69 0 0 chr9 43058464 43058493 -81017679 + (CAAAC)n Simple_repeat Simple_repeat 3 31 0 1 913 292 278 0 0 chr9 43058562 43058616 -81017556 + tRNA-Ala-GCY_ tRNA tRNA 15 68 -7 1 913 285 241 113 57 chr9 43059228 43059369 -81016803 - MIRc SINE MIR -101 167 19 1 913 186 43 0 0 chr9 43059499 43059522 -81016650 + (CAGGG)n Simple_repeat Simple_repeat 4 26 0 1 913 486 167 80 36 chr9 43059746 43059858 -81016314 + PB1D10 SINE Alu 1 117 0 1 913 312 234 0 14 chr9 43059858 43059943 -81016229 + B1F1 SINE Alu 3 86 -34 1 913 387 333 39 42 chr9 43060193 43060468 -81015704 - B4 SINE B4 -18 274 1 1 913 505 304 36 14 chr9 43060475 43060615 -81015557 - ID_B1 SINE B4 -4 220 78 1 913 212 171 0 24 chr9 43060952 43060994 -81015178 + C-rich Low_complexity Low_complexity 2 42 0 1 913 619 172 12 0 chr9 43061174 43061337 -81014835 + CT-rich Low_complexity Low_complexity 2 166 0 1 913 212 0 36 0 chr9 43062059 43062087 -81014085 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 913 360 0 0 0 chr9 43062087 43062127 -81014045 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 913 572 285 23 192 chr9 43062127 43062392 -81013780 - B4A SINE B4 -63 229 10 1 913 356 296 8 42 chr9 43062408 43062528 -81013644 - ID_B1 SINE B4 -1 223 108 1 913 256 209 0 0 chr9 43062797 43062840 -81013332 + ID SINE ID 2 44 -180 1 913 1679 184 95 23 chr9 43062837 43063227 -81012945 - MTD LTR MaLR -14 405 1 1 913 386 272 74 66 chr9 43063253 43063375 -81012797 + ID_B1 SINE B4 102 224 0 1 913 332 299 0 64 chr9 43063999 43064124 -81012048 + PB1D10 SINE Alu 1 117 0 1 913 229 313 169 46 chr9 43064413 43064674 -81011498 + LTR16A LTR ERVL 59 351 -100 1 913 438 20 0 0 chr9 43064743 43064794 -81011378 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 913 644 253 19 64 chr9 43064805 43064961 -81011211 - RSINE1 SINE B4 -15 150 2 1 913 4508 147 93 76 chr9 43065106 43065583 -81010589 + RMER13B LTR ERVK 2 508 -400 1 913 180 0 0 0 chr9 43065583 43065603 -81010569 + (CAAGC)n Simple_repeat Simple_repeat 5 24 0 1 913 4508 147 93 76 chr9 43065603 43066017 -81010155 + RMER13B LTR ERVK 509 907 -1 1 913 706 231 40 17 chr9 43066467 43066643 -81009529 - ID_B1 SINE B4 -41 183 4 1 913 781 259 111 20 chr9 43066821 43066867 -81009305 + ORR1B2 LTR MaLR 80 130 -216 1 913 1636 181 102 38 chr9 43066867 43067211 -81008961 + ORR1B2 LTR MaLR 1 366 -1 1 913 1125 126 108 5 chr9 43067211 43067408 -81008764 + ORR1B2 LTR MaLR 131 359 -8 1 913 303 287 119 0 chr9 43067504 43067605 -81008567 - HAL1-3A_ME LINE L1 -769 2089 1977 1 913 197 316 70 0 chr9 43067906 43067963 -81008209 + MIRm SINE MIR 184 244 -32 1 913 242 298 52 49 chr9 43068334 43068453 -81007719 - MIRc SINE MIR -76 192 76 1 913 188 86 29 0 chr9 43068470 43068505 -81007667 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1 913 1271 28 7 0 chr9 43068507 43068652 -81007520 - B1_Mus2 SINE Alu -1 146 1 1 913 264 200 41 41 chr9 43068684 43068757 -81007415 + Charlie12 DNA MER1_type 41 113 -2760 1 913 408 99 0 0 chr9 43068783 43068854 -81007318 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 913 510 172 23 0 chr9 43068870 43068957 -81007215 - RSINE1 SINE B4 -65 100 12 1 913 549 136 7 35 chr9 43069110 43069255 -81006917 + (TG)n Simple_repeat Simple_repeat 1 141 0 1 913 200 267 0 51 chr9 43069457 43069536 -81006636 + G-rich Low_complexity Low_complexity 2 76 0 1 913 276 378 0 0 chr9 43070663 43070790 -81005382 + G-rich Low_complexity Low_complexity 3 129 0 1 913 539 216 335 13 chr9 43071259 43071414 -81004758 - B3 SINE B2 -11 205 1 1 913 28 48 0 0 chr9 43071421 43071463 -81004709 + AT_rich Low_complexity Low_complexity 1 42 0 1 913 407 299 162 0 chr9 43071476 43071593 -81004579 - RSINE1 SINE B4 -23 142 7 1 913 1007 211 27 22 chr9 43071609 43071832 -81004340 - ID_B1 SINE B4 0 224 1 1 913 435 38 0 0 chr9 43072567 43072620 -81003552 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 913 360 0 0 0 chr9 43072620 43072659 -81003513 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 913 1279 105 20 20 chr9 43072779 43072974 -81003198 - B2_Mm2 SINE B2 0 195 1 1 913 807 261 77 19 chr9 43072991 43073198 -81002974 - ID_B1 SINE B4 0 224 6 1 913 418 200 0 13 chr9 43073835 43073911 -81002261 + ID4_ SINE ID 4 78 -5 1 913 323 325 15 38 chr9 43073991 43074122 -81002050 - B1F SINE Alu -20 129 2 1 913 369 0 0 0 chr9 43074143 43074184 -81001988 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 913 246 62 0 0 chr9 43074184 43074215 -81001957 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 913 474 360 72 11 chr9 43074274 43074538 -81001634 - B4A SINE B4 -8 284 5 1 913 180 200 0 0 chr9 43074546 43074576 -81001596 - MIR SINE MIR -61 147 118 1 913 258 298 96 0 chr9 43074608 43074712 -81001460 - MIR SINE MIR -21 241 128 1 913 339 25 0 0 chr9 43074883 43074923 -81001249 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 1 913 322 291 102 0 chr9 43075285 43075454 -81000718 + L1M3 LINE L1 4137 4318 -1822 1 913 390 333 9 0 chr9 43075458 43075572 -81000600 + PB1D10 SINE Alu 1 115 -2 1 913 283 254 90 0 chr9 43075572 43075639 -81000533 + ID4 SINE ID 2 74 -9 1 913 468 291 78 0 chr9 43075706 43075847 -81000325 + RSINE1 SINE B4 14 165 0 1 913 924 128 14 48 chr9 43075875 43076022 -81000150 + B1_Mm SINE Alu 5 146 -1 1 913 457 235 50 64 chr9 43076079 43076129 -81000043 + L1M3 LINE L1 4329 4370 -1770 1 913 2027 147 97 32 chr9 43076129 43076327 -80999845 - RMER10B LTR ERVL -1 397 197 1 913 660 59 0 0 chr9 43076327 43076412 -80999760 + (GGA)n Simple_repeat Simple_repeat 1 85 0 1 913 2027 147 97 32 chr9 43076412 43076586 -80999586 - RMER10B LTR ERVL -202 196 1 1 913 457 235 50 64 chr9 43076586 43076753 -80999419 + L1M3 LINE L1 4371 4543 -1597 1 913 405 0 0 0 chr9 43076805 43076850 -80999322 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 913 265 271 0 0 chr9 43076982 43077052 -80999120 + G-rich Low_complexity Low_complexity 1 70 0 1 913 272 311 30 24 chr9 43077149 43077317 -80998855 + CT-rich Low_complexity Low_complexity 4 172 0 1 913 615 258 23 0 chr9 43077983 43078111 -80998061 + RSINE1 SINE B4 22 152 -13 1 913 486 0 0 0 chr9 43078112 43078166 -80998006 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 913 191 351 0 0 chr9 43079721 43079795 -80996377 + MIRc SINE MIR 62 135 -133 1 913 1090 77 21 0 chr9 43080775 43080918 -80995254 - B1_Mus2 SINE Alu -1 146 1 1 913 307 236 18 0 chr9 43080920 43080975 -80995197 - HAL1-3A_ME LINE L1 -827 2031 1976 1 913 593 230 4 0 chr9 43080982 43081213 -80994959 + (TG)n Simple_repeat Simple_repeat 1 232 0 2 913 670 208 95 57 chr9 43081217 43081375 -80994797 - RSINE1 SINE B4 0 165 2 2 913 800 211 119 29 chr9 43081375 43081582 -80994590 - B4A SINE B4 -65 227 2 2 913 697 222 146 16 chr9 43081593 43081785 -80994387 - ID_B1 SINE B4 -7 217 1 2 913 226 338 73 0 chr9 43082292 43082360 -80993812 - MIR SINE MIR -55 153 81 2 913 339 314 194 5 chr9 43082780 43082966 -80993206 + MIRc SINE MIR 17 237 -31 2 913 441 0 0 0 chr9 43082972 43083021 -80993151 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 913 360 0 0 0 chr9 43083021 43083060 -80993112 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 913 1025 116 6 0 chr9 43083103 43083267 -80992905 + (TTCTC)n Simple_repeat Simple_repeat 2 166 0 2 913 363 131 0 0 chr9 43083268 43083324 -80992848 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 913 670 189 24 144 chr9 43083324 43083491 -80992681 - B1_Mur1 SINE Alu -1 148 2 2 913 5576 216 56 19 chr9 43083510 43084816 -80991356 - Lx7 LINE L1 0 7696 6343 2 913 1613 42 5 0 chr9 43084819 43085011 -80991161 - B2_Mm1a SINE B2 0 193 1 2 913 918 291 107 87 chr9 43085013 43085241 -80990931 + MT2B LTR ERVL 3 238 -363 2 913 1209 68 0 0 chr9 43085241 43085388 -80990784 - B1_Mus2 SINE Alu 0 147 1 2 913 746 188 271 0 chr9 43085392 43085562 -80990610 - B3 SINE B2 0 216 1 2 913 918 224 145 98 chr9 43085562 43085958 -80990214 + MT2B LTR ERVL 220 554 -47 2 913 695 183 8 0 chr9 43085958 43086078 -80990094 - Lx7 LINE L1 -1353 6343 6223 2 913 483 18 0 0 chr9 43086080 43086136 -80990036 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 913 200 239 21 21 chr9 43087296 43087343 -80988829 - L2c LINE L2 -59 3328 3282 2 913 292 259 0 94 chr9 43087345 43087473 -80988699 + PB1D10 SINE Alu 2 117 0 2 913 1158 50 14 0 chr9 43087493 43087633 -80988539 + B1_Mm SINE Alu 2 143 -4 2 913 333 0 0 0 chr9 43087633 43087670 -80988502 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2 913 279 203 0 0 chr9 43088235 43088304 -80987868 + (CCA)n Simple_repeat Simple_repeat 3 71 0 2 913 295 276 0 38 chr9 43088370 43088449 -80987723 + PB1D10 SINE Alu 41 116 -1 2 913 452 99 0 14 chr9 43088462 43088534 -80987638 + (TTTTC)n Simple_repeat Simple_repeat 4 74 0 2 913 585 42 0 0 chr9 43088535 43088607 -80987565 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 913 539 235 52 22 chr9 43088607 43088742 -80987430 - B1F SINE Alu -9 140 2 2 913 237 128 0 0 chr9 43089736 43089783 -80986389 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 2 913 533 236 0 26 chr9 43089787 43089900 -80986272 + PB1D7 SINE Alu 1 110 -10 2 913 421 248 100 9 chr9 43089917 43090027 -80986145 + ID_B1 SINE B4 77 196 -28 2 913 236 297 208 0 chr9 43091837 43091938 -80984234 - ID_B1 SINE B4 -8 216 95 2 913 619 220 17 0 chr9 43091962 43092080 -80984092 - PB1D7 SINE Alu 0 120 1 2 913 209 204 0 53 chr9 43092081 43092138 -80984034 + CT-rich Low_complexity Low_complexity 3 56 0 2 913 322 274 48 0 chr9 43092178 43092262 -80983910 - B1F1 SINE Alu -8 141 54 2 913 235 282 34 45 chr9 43092703 43092792 -80983380 + MIRb SINE MIR 64 151 -117 2 913 211 250 27 93 chr9 43092764 43092839 -80983333 + MIRm SINE MIR 124 193 -83 2 913 202 236 158 63 chr9 43093872 43093967 -80982205 - MIRb SINE MIR -158 104 1 2 913 282 314 73 16 chr9 43094634 43094757 -80981415 + MIRb SINE MIR 65 194 -74 2 913 237 65 0 0 chr9 43095292 43095323 -80980849 + (A)n Simple_repeat Simple_repeat 1 31 0 2 913 465 237 0 34 chr9 43095733 43095851 -80980321 + PB1D10 SINE Alu 3 116 -1 2 913 351 0 0 0 chr9 43095877 43095916 -80980256 + (CCAA)n Simple_repeat Simple_repeat 4 42 0 2 913 663 205 0 17 chr9 43095947 43096066 -80980106 + PB1D7 SINE Alu 1 117 -3 2 913 233 296 58 100 chr9 43095964 43096084 -80980088 + MT2B LTR ERVL 182 296 -305 2 913 415 221 10 69 chr9 43096082 43096184 -80979988 + ID_B1 SINE B4 69 164 -60 2 913 456 203 1 12 chr9 43096104 43096200 -80979972 + B1F SINE Alu 7 102 -18 2 913 240 35 0 0 chr9 43096720 43096749 -80979423 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 913 235 297 139 40 chr9 43097025 43097064 -80979108 - B4A SINE B4 -47 245 135 2 913 382 202 158 11 chr9 43097064 43097159 -80979013 - B1F SINE Alu -32 117 9 2 913 235 297 139 40 chr9 43097159 43097176 -80978996 - B4A SINE B4 -47 134 80 2 913 856 173 0 9 chr9 43097417 43097640 -80978532 + GA-rich Low_complexity Low_complexity 1 220 0 2 913 254 313 0 29 chr9 43098334 43098403 -80977769 - B4 SINE B4 0 292 226 2 913 280 271 0 14 chr9 43098409 43098497 -80977675 - ID4_ SINE ID -61 91 5 2 913 518 277 165 25 chr9 43098502 43098702 -80977470 - B4A SINE B4 -63 229 2 2 913 1229 182 15 0 chr9 43098727 43098930 -80977242 - B3 SINE B2 -6 210 5 2 913 438 36 0 0 chr9 43099214 43099270 -80976902 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 913 555 343 36 47 chr9 43099381 43099595 -80976577 + L1MEf LINE L1 1476 1687 -5415 2 913 417 224 55 27 chr9 43099595 43099705 -80976467 + PB1D10 SINE Alu 3 115 -2 2 913 555 343 36 47 chr9 43099705 43099875 -80976297 + L1MEf LINE L1 1688 1856 -5246 2 913 366 251 55 42 chr9 43099967 43100083 -80976089 + PB1D9 SINE Alu 16 126 -21 2 913 274 299 11 113 chr9 43100086 43100271 -80975901 + L1MEf LINE L1 2950 3115 -3987 2 913 523 255 92 31 chr9 43100394 43100613 -80975559 + MTEb LTR MaLR 20 254 -125 2 913 579 307 58 81 chr9 43100683 43101115 -80975057 + L1MEf LINE L1 3177 3655 -3679 2 913 872 209 87 0 chr9 43101123 43101329 -80974843 + ID_B1 SINE B4 1 224 0 2 913 286 317 116 8 chr9 43101406 43101527 -80974645 + B1F SINE Alu 7 140 -9 2 913 320 254 27 116 chr9 43101658 43101730 -80974442 - L1M5 LINE L1 -3623 2523 2453 2 913 180 0 0 0 chr9 43101730 43101750 -80974422 + (TTA)n Simple_repeat Simple_repeat 3 22 0 2 913 320 262 25 114 chr9 43101750 43101858 -80974314 - L1M5 LINE L1 -3694 2452 2361 2 913 1050 139 0 0 chr9 43101858 43102002 -80974170 - B1_Mur2 SINE Alu -4 145 2 2 913 229 280 19 112 chr9 43102002 43102025 -80974147 - L1M5 LINE L1 -3786 2360 2338 2 913 422 284 58 64 chr9 43102075 43102106 -80974066 - B4A SINE B4 0 292 264 2 913 204 125 0 0 chr9 43102106 43102138 -80974034 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 913 422 284 58 64 chr9 43102138 43102279 -80973893 - B4A SINE B4 -29 263 121 2 913 313 293 24 12 chr9 43102346 43102429 -80973743 + ID SINE ID 2 85 -139 2 913 303 28 0 0 chr9 43102438 43102474 -80973698 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2 913 191 125 25 0 chr9 43102491 43102531 -80973641 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 2 913 262 159 0 0 chr9 43102555 43102599 -80973573 - Tigger5 DNA MER2_type -71 2335 2292 2 913 461 331 7 0 chr9 43102611 43102747 -80973425 - Tigger5 DNA MER2_type -2175 231 95 2 913 418 322 113 43 chr9 43103415 43104108 -80972064 + L1MEf LINE L1 4849 5596 -1410 2 913 1446 73 16 0 chr9 43104108 43104300 -80971872 + B2_Mm2 SINE B2 1 195 0 2 913 418 320 115 41 chr9 43104300 43104522 -80971650 + L1MEf LINE L1 5597 5816 -1190 2 913 558 194 73 18 chr9 43104522 43104632 -80971540 + PB1D7 SINE Alu 1 116 -4 2 913 686 297 13 31 chr9 43104643 43104869 -80971303 + ID_B1 SINE B4 3 224 0 2 913 255 341 44 44 chr9 43104969 43105150 -80971022 + L1MD3 LINE L1 4730 4910 -1236 2 913 345 342 69 45 chr9 43105282 43105527 -80970645 + L1MC LINE L1 5089 5339 -807 2 913 342 258 108 7 chr9 43105602 43105784 -80970388 + L1MD3 LINE L1 5393 5588 -586 2 913 473 324 24 51 chr9 43105831 43106127 -80970045 + B4A SINE B4 1 288 -4 2 913 354 138 37 12 chr9 43106271 43106352 -80969820 + CT-rich Low_complexity Low_complexity 2 84 0 2 913 707 207 57 0 chr9 43106380 43106520 -80969652 - B1F SINE Alu 0 149 2 2 913 289 268 151 35 chr9 43106520 43106779 -80969393 + L1MD3 LINE L1 5695 5983 -2012 2 913 317 318 36 58 chr9 43106906 43107043 -80969129 + L1ME3 LINE L1 5163 5296 -850 2 913 932 272 45 28 chr9 43107148 43107435 -80968737 + B4A SINE B4 1 292 0 2 913 286 289 8 0 chr9 43107490 43107611 -80968561 + L1ME3 LINE L1 5297 5418 -1026 2 913 987 165 37 42 chr9 43107662 43107852 -80968320 + B3 SINE B2 1 189 -27 2 913 432 161 26 18 chr9 43107996 43108110 -80968062 + CT-rich Low_complexity Low_complexity 3 117 0 2 913 304 273 119 28 chr9 43108125 43108268 -80967904 - HAL1-3A_ME LINE L1 -419 2439 2284 2 913 577 276 21 43 chr9 43108361 43108501 -80967671 - RSINE1 SINE B4 -21 144 8 2 913 321 291 172 44 chr9 43108506 43109003 -80967169 + L1ME3 LINE L1 5585 6145 -17 2 913 444 204 9 37 chr9 43109442 43109549 -80966623 - PB1D7 SINE Alu 0 120 17 2 913 258 229 49 0 chr9 43110113 43110174 -80965998 - L2a LINE L2 -10 3416 3353 2 913 240 122 0 0 chr9 43110650 43110691 -80965481 + (CACCC)n Simple_repeat Simple_repeat 4 44 0 2 913 386 285 79 21 chr9 43111168 43111308 -80964864 + MIR SINE MIR 3 150 -112 2 913 185 271 163 12 chr9 43111532 43111618 -80964554 + MIRc SINE MIR 42 140 -128 2 913 343 264 42 127 chr9 43112012 43112177 -80963995 + ORR1D2 LTR MaLR 158 318 -41 2 913 424 267 94 8 chr9 43112453 43112570 -80963602 - L3b LINE CR1 -330 152 26 2 913 252 333 69 0 chr9 43112834 43112921 -80963251 - MIRb SINE MIR -77 191 99 2 913 590 193 55 35 chr9 43112946 43113091 -80963081 + B1F SINE Alu 2 149 0 2 913 350 370 52 36 chr9 43113270 43113522 -80962650 - MLT2C1 LTR ERVL -27 370 115 2 913 501 224 27 27 chr9 43113523 43113633 -80962539 + PB1D7 SINE Alu 3 112 -8 2 913 807 265 35 15 chr9 43114736 43114935 -80961237 - ID_B1 SINE B4 -18 206 4 2 913 1122 122 0 0 chr9 43115830 43116010 -80960162 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 2 913 268 202 22 11 chr9 43116011 43116101 -80960071 + (CCCA)n Simple_repeat Simple_repeat 2 92 0 2 913 180 0 0 0 chr9 43116153 43116173 -80959999 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 913 211 274 0 0 chr9 43116504 43116555 -80959617 + CT-rich Low_complexity Low_complexity 2 52 0 2 913 491 74 12 0 chr9 43116573 43116654 -80959518 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 2 913 520 222 0 11 chr9 43116654 43116758 -80959414 - B1F SINE Alu -8 112 9 2 913 303 293 51 108 chr9 43116657 43116833 -80959339 - B4 SINE B4 -95 197 32 2 913 429 301 202 0 chr9 43117856 43118059 -80958113 + B4A SINE B4 11 254 -38 3 913 450 0 0 0 chr9 43118085 43118135 -80958037 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 913 1038 102 0 0 chr9 43118144 43118320 -80957852 + (GA)n Simple_repeat Simple_repeat 2 177 0 3 913 279 181 0 0 chr9 43120045 43120117 -80956055 + CT-rich Low_complexity Low_complexity 1 72 0 3 913 192 97 0 0 chr9 43120257 43120288 -80955884 + (CACCC)n Simple_repeat Simple_repeat 1 31 0 3 913 180 0 0 0 chr9 43121177 43121197 -80954975 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 3 914 200 351 25 42 chr9 43123125 43123244 -80952928 - MER5B DNA MER1_type -1 177 61 3 914 462 18 0 0 chr9 43124000 43124055 -80952117 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 914 243 325 83 48 chr9 43125356 43125524 -80950648 - MIR SINE MIR -9 253 80 3 914 646 238 0 5 chr9 43128086 43128222 -80947950 + ID_B1 SINE B4 86 214 -10 3 914 180 0 0 0 chr9 43128223 43128243 -80947929 + (CAA)n Simple_repeat Simple_repeat 1 20 0 3 914 444 294 35 12 chr9 43128780 43128952 -80947220 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 3 914 408 269 28 55 chr9 43128932 43128981 -80947191 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 3 914 1052 131 6 0 chr9 43128981 43129156 -80947016 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 3 914 408 269 28 55 chr9 43129156 43129287 -80946885 + (CCCA)n Simple_repeat Simple_repeat 2 129 0 3 914 210 295 34 11 chr9 43129239 43129328 -80946844 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 3 914 318 299 52 0 chr9 43129401 43129498 -80946674 + MER117 DNA MER1_type 96 197 0 3 914 286 309 88 81 chr9 43129576 43129896 -80946276 - L2c LINE L2 -40 3347 3026 3 914 193 308 103 28 chr9 43132604 43132711 -80943461 + MIRc SINE MIR 99 213 -55 3 914 182 319 87 11 chr9 43134142 43134234 -80941938 + MIR3 SINE MIR 90 188 -20 3 914 537 16 0 0 chr9 43135369 43135431 -80940741 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 914 933 263 57 12 chr9 43136064 43136310 -80939862 + B4A SINE B4 1 257 -35 3 914 426 181 20 60 chr9 43137221 43137321 -80938851 + RSINE1 SINE B4 2 97 -68 3 914 438 20 0 0 chr9 43139127 43139178 -80936994 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 914 1255 121 11 6 chr9 43140997 43141180 -80934992 - B2_Mm2 SINE B2 -10 185 2 3 914 299 312 79 30 chr9 43141732 43141897 -80934275 + MIR3 SINE MIR 30 202 -6 3 914 204 346 49 49 chr9 43142076 43142240 -80933932 + MIRm SINE MIR 28 191 -17 3 914 416 335 26 22 chr9 43142689 43142909 -80933263 + MIR SINE MIR 7 226 -42 3 914 967 99 0 7 chr9 43144281 43144423 -80931749 - B1_Mur4 SINE Alu -1 149 9 3 914 1315 147 32 0 chr9 43144584 43144802 -80931370 - URR1B DNA MER1_type 0 225 1 3 914 181 233 80 27 chr9 43145002 43145077 -80931095 - L2c LINE L2 -208 3179 3101 3 914 224 364 0 7 chr9 43146768 43146859 -80929313 + MIR SINE MIR 43 129 -139 3 914 3729 100 24 17 chr9 43147087 43147624 -80928548 - Lx LINE L1 -1 6653 6113 3 914 422 248 120 0 chr9 43147631 43147748 -80928424 - ID_B1 SINE B4 0 224 94 3 914 285 280 13 0 chr9 43148457 43148532 -80927640 + G-rich Low_complexity Low_complexity 4 79 0 3 914 941 266 102 32 chr9 43148964 43149279 -80926893 + MER2 DNA MER2_type 7 343 -2 3 914 278 302 113 53 chr9 43149765 43149898 -80926274 + MIRb SINE MIR 115 255 -13 3 914 900 310 47 44 chr9 43150406 43150750 -80925422 + MER2 DNA MER2_type 1 345 0 3 914 861 54 0 0 chr9 43152174 43152285 -80923887 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 3 914 451 243 89 68 chr9 43152515 43152705 -80923467 - L1MD1 LINE L1 -5 6237 6044 3 914 263 316 24 16 chr9 43152736 43152863 -80923309 - MTEb LTR MaLR 0 379 230 3 914 222 196 28 0 chr9 43152886 43152993 -80923179 + (TG)n Simple_repeat Simple_repeat 1 110 0 3 914 314 236 7 0 chr9 43153009 43153153 -80923019 + (TG)n Simple_repeat Simple_repeat 1 145 0 3 914 502 207 0 11 chr9 43153165 43153346 -80922826 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 914 632 266 58 0 chr9 43153537 43153691 -80922481 + B3A SINE B2 9 171 -27 3 914 285 284 0 33 chr9 43154246 43154337 -80921835 - B2_Mm2 SINE B2 -19 176 89 3 914 267 401 32 26 chr9 43154949 43155105 -80921067 + L3 LINE CR1 4218 4374 -115 3 914 308 313 101 0 chr9 43155161 43155295 -80920877 + MIRc SINE MIR 37 180 -88 3 914 674 304 66 4 chr9 43155315 43155559 -80920613 + Lx7 LINE L1 7062 7320 -376 3 914 241 268 0 24 chr9 43155574 43155658 -80920514 + T-rich Low_complexity Low_complexity 3 84 0 3 914 471 90 0 0 chr9 43155743 43155821 -80920351 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 914 423 233 137 15 chr9 43156170 43156301 -80919871 - B4A SINE B4 -143 149 3 3 914 241 258 0 0 chr9 43156303 43156369 -80919803 + L1MB8 LINE L1 6111 6176 -2 3 914 223 365 60 9 chr9 43156845 43156860 -80919312 + B4 SINE B4 70 90 -202 3 914 396 312 0 18 chr9 43156860 43156974 -80919198 + PB1D7 SINE Alu 2 113 -7 3 914 333 0 0 0 chr9 43157143 43157180 -80918992 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 914 242 333 59 73 chr9 43159019 43159223 -80916949 + MIRc SINE MIR 47 247 -21 3 914 567 78 0 0 chr9 43159444 43159521 -80916651 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 914 745 178 287 0 chr9 43159521 43159678 -80916494 - B3 SINE B2 -14 202 1 3 914 2164 289 67 47 chr9 43160473 43161282 -80914890 + MER63C DNA AcHobo 32 856 -74 3 914 506 231 0 41 chr9 43161363 43161485 -80914687 + PB1D10 SINE Alu 1 117 0 3 914 430 250 58 98 chr9 43161517 43161690 -80914482 + B3 SINE B2 50 215 -1 3 914 348 320 117 11 chr9 43162063 43162243 -80913929 + L2a LINE L2 2969 3167 -259 3 914 1176 255 50 48 chr9 43162353 43162690 -80913482 - MTD LTR MaLR -77 342 5 3 914 204 200 0 0 chr9 43163527 43163562 -80912610 + polypurine Low_complexity Low_complexity 3 37 0 3 914 485 297 35 35 chr9 43164372 43164570 -80911602 + MIRb SINE MIR 37 237 -31 3 914 357 131 0 0 chr9 43165001 43165062 -80911110 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 914 845 87 0 16 chr9 43167781 43167909 -80908263 - MT-int LTR MaLR -135 963 838 3 914 3520 32 0 5 chr9 43169027 43169429 -80906743 - MTB LTR MaLR 0 400 1 3 914 2045 93 8 102 chr9 43169429 43169704 -80906468 - MTB-int LTR MaLR 0 1098 831 3 914 1160 71 0 7 chr9 43169704 43169846 -80906326 + B1_Mus1 SINE Alu 1 141 -7 3 914 2045 93 8 102 chr9 43169846 43169952 -80906220 - MTB-int LTR MaLR -268 830 753 3 914 247 269 44 57 chr9 43171679 43171784 -80904388 + MIRc SINE MIR 101 197 -71 3 914 239 79 26 0 chr9 43171837 43171875 -80904297 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 914 322 350 29 7 chr9 43172003 43172141 -80904031 - L1MC4a LINE L1 -122 7920 7780 3 914 410 169 0 0 chr9 43172153 43172218 -80903954 + PB1D9 SINE Alu 1 65 -55 3 914 277 342 35 0 chr9 43172340 43172454 -80903718 - L1MC4a LINE L1 -375 7667 7550 3 914 225 316 53 0 chr9 43173298 43173431 -80902741 - L1MC4a LINE L1 -522 7520 7381 3 914 1007 233 85 138 chr9 43173719 43173921 -80902251 + MTE2a LTR MaLR 1 190 -189 3 914 327 130 0 0 chr9 43173921 43173975 -80902197 + (CAGG)n Simple_repeat Simple_repeat 1 54 0 3 914 1007 233 85 138 chr9 43173975 43174108 -80902064 + MTE2a LTR MaLR 191 332 -47 3 914 1123 96 31 73 chr9 43174108 43174299 -80901873 - B2_Mm1a SINE B2 -10 183 1 3 914 1007 233 85 138 chr9 43174299 43174360 -80901812 + MTE2a LTR MaLR 333 376 -3 3 914 355 233 0 0 chr9 43174381 43174467 -80901705 + RMER12 LTR ERVK 760 845 -477 3 914 456 91 0 0 chr9 43174467 43174533 -80901639 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 3 914 444 312 106 48 chr9 43174541 43174958 -80901214 - L1MC4a LINE L1 -805 7077 6637 3 914 1742 187 97 37 chr9 43175105 43175488 -80900684 + MTD LTR MaLR 14 419 0 3 914 218 149 0 29 chr9 43175727 43175796 -80900376 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 3 914 3129 58 2 39 chr9 43176070 43176313 -80899859 - MTB LTR MaLR 0 400 160 3 914 1506 68 11 0 chr9 43176313 43176503 -80899669 + B2_Mm1t SINE B2 1 192 -1 3 914 3129 58 2 39 chr9 43176503 43176674 -80899498 - MTB LTR MaLR -241 159 1 3 914 842 290 47 0 chr9 43177329 43177543 -80898629 - MER2 DNA MER2_type -36 309 86 3 914 420 82 0 0 chr9 43177552 43177613 -80898559 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 914 283 237 105 21 chr9 43177614 43177709 -80898463 - PB1D10 SINE Alu -9 108 6 3 914 333 0 0 0 chr9 43178003 43178040 -80898132 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 914 232 366 64 19 chr9 43178422 43178578 -80897594 + L2a LINE L2 3262 3424 -2 3 914 384 22 0 0 chr9 43179759 43179804 -80896368 + (GGGGA)n Simple_repeat Simple_repeat 1 45 0 3 914 555 337 67 8 chr9 43179859 43180113 -80896059 + MER97b DNA MER1_type? 99 367 -686 3 914 294 243 72 144 chr9 43180271 43180396 -80895776 + PB1D10 SINE Alu 1 116 -4 3 914 268 143 0 0 chr9 43180431 43180473 -80895699 + ID4_ SINE ID 2 43 -40 3 914 423 132 0 0 chr9 43180518 43180586 -80895586 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 3 914 279 0 0 0 chr9 43180586 43180617 -80895555 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 914 502 289 88 68 chr9 43180634 43181200 -80894972 + MER97b DNA MER1_type? 541 1070 -20 3 914 396 322 88 7 chr9 43181604 43181751 -80894421 - MLT1J LTR MaLR -243 269 111 3 914 605 218 21 11 chr9 43181786 43182049 -80894123 + CT-rich Low_complexity Low_complexity 1 265 0 3 914 952 203 71 20 chr9 43182059 43182255 -80893917 - B3 SINE B2 0 216 11 3 914 687 65 0 11 chr9 43182748 43182842 -80893330 - B2_Mm2 SINE B2 -3 192 100 3 914 454 305 43 149 chr9 43182912 43183120 -80893052 + B3A SINE B2 12 197 -1 3 914 943 198 6 17 chr9 43183130 43183305 -80892867 - ID_B1 SINE B4 -31 193 21 3 914 2177 113 84 16 chr9 43183305 43183674 -80892498 + ORR1B1 LTR MaLR 1 394 0 3 914 198 0 0 0 chr9 43183687 43183709 -80892463 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 914 1422 225 111 27 chr9 43183710 43184183 -80891989 - RMER4B LTR ERVK -36 549 1 3 914 1876 145 40 23 chr9 43184238 43184680 -80891492 - RMER17C LTR ERVK -519 439 16 4 914 309 273 97 130 chr9 43184886 43185071 -80891101 - MLT1M LTR MaLR -362 310 132 4 914 180 0 0 0 chr9 43186482 43186502 -80889670 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 914 714 55 0 0 chr9 43186502 43186592 -80889580 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 914 500 95 12 0 chr9 43187840 43187924 -80888248 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 914 302 218 83 71 chr9 43187947 43188031 -80888141 + MER21B LTR ERV1 147 231 -632 4 914 458 243 328 45 chr9 43188088 43188442 -80887730 + RMER21B LTR ERV1 11 464 -378 4 914 299 343 97 31 chr9 43188687 43188976 -80887196 - L2a LINE L2 -202 3224 2917 4 914 419 258 122 11 chr9 43189478 43189621 -80886551 + MLT1D LTR MaLR 291 475 -30 4 914 437 208 50 0 chr9 43189701 43189802 -80886370 + ORR1E LTR MaLR 10 115 -244 4 914 340 247 71 0 chr9 43189970 43190055 -80886117 + MIR SINE MIR 85 175 -87 4 914 749 331 61 61 chr9 43190220 43190580 -80885592 - MLT1A LTR MaLR -11 363 4 4 914 914 284 88 17 chr9 43191015 43191309 -80884863 + ORSL-2a DNA Tip100 27 341 -1 4 914 791 263 101 0 chr9 43191444 43191642 -80884530 + ID_B1 SINE B4 4 221 -3 4 914 360 148 0 0 chr9 43191642 43191703 -80884469 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 4 914 2137 91 54 19 chr9 43192924 43193239 -80882933 + ORR1A3 LTR MaLR 1 326 0 4 914 333 256 82 0 chr9 43194214 43194325 -80881847 - MIR SINE MIR -107 169 45 4 914 1134 125 0 0 chr9 43194408 43194700 -80881472 + (GA)n Simple_repeat Simple_repeat 1 292 0 4 914 666 332 89 11 chr9 43194853 43195124 -80881048 - B4 SINE B4 0 292 1 4 914 696 242 0 22 chr9 43195199 43195334 -80880838 + RSINE1 SINE B4 3 134 -31 4 914 340 269 121 35 chr9 43195334 43195372 -80880800 + B2_Mm1a SINE B2 2 189 -4 4 914 974 302 83 26 chr9 43195419 43195840 -80880332 + MER67C LTR ERV1 266 710 -1 4 914 228 335 86 48 chr9 43196077 43196287 -80879885 - RMER17C LTR ERVK -56 354 137 4 914 579 296 0 7 chr9 43196432 43196568 -80879604 - ID_B1 SINE B4 -10 214 80 4 914 1006 257 19 0 chr9 43196597 43196803 -80879369 - B3 SINE B2 0 216 7 4 914 21 0 0 0 chr9 43196849 43196870 -80879302 + AT_rich Low_complexity Low_complexity 1 21 0 4 914 1009 150 7 0 chr9 43196870 43197017 -80879155 - B1_Mur2 SINE Alu 0 149 2 4 914 287 269 0 82 chr9 43198060 43198133 -80878039 + ID4 SINE ID 12 78 -5 4 914 432 0 0 0 chr9 43198135 43198183 -80877989 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 914 26 0 0 0 chr9 43198307 43198333 -80877839 + AT_rich Low_complexity Low_complexity 1 26 0 4 914 641 248 30 65 chr9 43198334 43198502 -80877670 - RSINE1 SINE B4 0 165 4 4 914 1266 288 49 38 chr9 43199062 43199430 -80876742 - MTEa LTR MaLR -4 375 4 4 914 236 296 41 27 chr9 43199993 43200066 -80876106 + LTR45 LTR ERV1 447 520 -5 4 914 2407 125 33 28 chr9 43200109 43200505 -80875667 - RMER10B LTR ERVL 0 398 1 4 914 306 0 0 0 chr9 43201153 43201187 -80874985 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 914 389 190 38 0 chr9 43201197 43201276 -80874896 + RLTR23 LTR ERV1 349 430 0 4 914 1223 210 8 20 chr9 43201992 43202257 -80873915 - ORR1E LTR MaLR -87 292 4 4 914 600 107 0 0 chr9 43203100 43203203 -80872969 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 914 867 102 0 0 chr9 43203693 43203821 -80872351 + (TCTA)n Simple_repeat Simple_repeat 1 128 0 4 914 213 65 0 0 chr9 43203829 43203860 -80872312 + (TATG)n Simple_repeat Simple_repeat 2 32 0 4 914 614 265 30 0 chr9 43203873 43204005 -80872167 - RSINE1 SINE B4 -28 137 2 4 914 510 17 0 0 chr9 43204135 43204194 -80871978 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 914 267 250 165 10 chr9 43205202 43205299 -80870873 + Charlie7 DNA MER1_type 46 157 -2455 4 914 2211 79 3 112 chr9 43205314 43205672 -80870500 - ORR1A2 LTR MaLR -8 319 1 4 914 1895 133 92 7 chr9 43206426 43206729 -80869443 + ORR1A4 LTR MaLR 1 329 0 4 914 231 330 32 11 chr9 43207363 43207458 -80868714 + Lx8 LINE L1 7094 7190 -283 4 914 196 185 18 18 chr9 43207720 43207775 -80868397 + CT-rich Low_complexity Low_complexity 4 58 0 4 914 3895 196 72 98 chr9 43207782 43207888 -80868284 - RMER1A Other Other -13 1017 869 4 914 717 73 0 0 chr9 43207888 43207984 -80868188 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 914 3895 196 72 98 chr9 43207984 43208896 -80867276 - RMER1A Other Other -162 868 27 4 914 447 287 76 6 chr9 43208969 43209127 -80867045 + RMER15 LTR ERVL 405 573 -2 4 914 242 244 51 0 chr9 43209825 43209903 -80866269 - L1MD1 LINE L1 -5 6237 6156 4 914 376 279 18 0 chr9 43209912 43210023 -80866149 + L1MD LINE L1 5650 5762 -597 4 914 501 255 151 17 chr9 43210027 43210266 -80865906 - L1MD1 LINE L1 -97 6145 5875 4 914 657 259 88 0 chr9 43210550 43210697 -80865475 + B3A SINE B2 1 160 -38 4 914 369 0 0 0 chr9 43210704 43210745 -80865427 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 914 561 55 0 0 chr9 43210775 43210848 -80865324 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 914 472 267 17 33 chr9 43210848 43210968 -80865204 - RSINE1 SINE B4 -45 120 3 4 914 393 214 158 8 chr9 43210974 43211101 -80865071 - L1MDa LINE L1 -2221 4316 4171 4 914 1238 233 47 107 chr9 43211119 43211522 -80864650 - MTE2a LTR MaLR 0 379 1 4 914 1967 191 29 34 chr9 43211536 43211954 -80864218 + MTD LTR MaLR 1 416 -3 4 914 553 58 23 0 chr9 43211958 43212044 -80864128 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 4 914 454 226 19 10 chr9 43212044 43212147 -80864025 - PB1D10 SINE Alu -8 109 6 4 914 1713 231 52 82 chr9 43212158 43212890 -80863282 - L1MDa LINE L1 -2361 4176 3467 4 914 296 379 19 50 chr9 43212924 43213067 -80863105 - RSINE1 SINE B4 0 165 27 4 914 1759 192 39 39 chr9 43213067 43213451 -80862721 - ORR1C2 LTR MaLR 0 384 1 4 914 296 379 19 50 chr9 43213451 43213468 -80862704 - RSINE1 SINE B4 -139 26 10 4 914 663 154 0 26 chr9 43213479 43213589 -80862583 + (TTTA)n Simple_repeat Simple_repeat 3 111 0 4 914 1367 79 0 6 chr9 43213589 43213767 -80862405 - B2_Mm2 SINE B2 -18 177 1 4 914 663 154 0 26 chr9 43213767 43213809 -80862363 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 4 914 248 250 26 117 chr9 43213816 43213893 -80862279 - PB1D7 SINE Alu -18 102 33 4 914 678 231 188 3 chr9 43214198 43214502 -80861670 - L1MDa LINE L1 -5068 1565 1206 4 914 900 292 57 8 chr9 43214524 43214786 -80861386 + B4A SINE B4 5 279 -13 4 914 363 283 258 64 chr9 43214855 43215274 -80860898 - L1MDa LINE L1 -5432 1201 702 4 914 262 320 29 10 chr9 43215314 43215418 -80860754 - L1MDa LINE L1 -6108 525 420 4 914 1414 72 17 0 chr9 43215547 43215728 -80860444 + B2_Mm2 SINE B2 2 185 -10 4 914 209 33 33 0 chr9 43215728 43215758 -80860414 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 4 914 532 283 37 11 chr9 43215786 43215975 -80860197 - L1MDa LINE L1 -6439 194 1 4 914 2418 268 47 35 chr9 43215968 43216280 -80859892 - L1MB8 LINE L1 -1 6177 5834 4 914 351 247 82 0 chr9 43216280 43216353 -80859819 - ID4_ SINE ID -4 79 1 4 914 279 228 145 80 chr9 43216356 43216494 -80859678 - B1F SINE Alu -2 147 1 4 914 2418 268 47 35 chr9 43216494 43217055 -80859117 - L1MB8 LINE L1 -345 5833 5292 4 914 329 191 55 0 chr9 43217167 43217234 -80858938 - PB1D10 SINE Alu -66 83 11 4 914 232 296 123 0 chr9 43217234 43217246 -80858926 - ID_B1 SINE B4 -61 161 73 4 914 333 202 18 116 chr9 43217246 43217358 -80858814 - L1MB8 LINE L1 -941 5205 5105 4 914 418 301 134 13 chr9 43217558 43217790 -80858382 - L1MB8 LINE L1 -1096 5050 4791 4 914 765 300 122 9 chr9 43217892 43218235 -80857937 - MLT1B LTR MaLR -6 384 3 4 914 927 27 0 0 chr9 43218434 43218544 -80857628 + (TC)n Simple_repeat Simple_repeat 2 111 0 4 914 288 77 0 0 chr9 43218544 43218582 -80857590 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 914 341 43 21 0 chr9 43219678 43219725 -80856447 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 914 325 317 57 29 chr9 43220218 43220607 -80855565 + L1MC4 LINE L1 6977 7378 -664 4 914 278 283 130 52 chr9 43220724 43220972 -80855200 - MLT1B LTR MaLR -74 291 18 4 914 885 278 218 33 chr9 43220999 43221440 -80854732 - MLT1F2 LTR MaLR -11 669 19 4 914 1598 152 235 3 chr9 43221599 43221897 -80854275 + ORR1B2 LTR MaLR 1 367 0 4 914 300 254 154 26 chr9 43222243 43222360 -80853812 + L1MC4 LINE L1 7767 7898 -144 4 914 314 295 67 0 chr9 43222435 43222540 -80853632 - PB1D10 SINE Alu -5 112 1 4 914 525 71 0 0 chr9 43222552 43222622 -80853550 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 4 914 3707 133 51 52 chr9 43222645 43223438 -80852734 - RMER17B LTR ERVK -15 794 1 4 914 455 181 56 74 chr9 43223438 43223550 -80852622 - B1_Mur1 SINE Alu -28 121 8 4 914 1035 267 9 0 chr9 43223587 43223797 -80852375 - B3 SINE B2 0 216 5 4 914 553 280 87 0 chr9 43223835 43223985 -80852187 - RSINE1 SINE B4 -2 163 1 4 914 236 237 0 17 chr9 43224060 43224120 -80852052 + RMER1B Other Other 32 90 -976 4 914 1925 264 129 65 chr9 43224124 43225051 -80851121 + RMER1B Other Other 66 1052 -14 4 914 379 208 57 38 chr9 43225107 43225212 -80850960 - RMER10B LTR ERVL 0 398 292 4 914 184 292 108 0 chr9 43225845 43225910 -80850262 + MIRc SINE MIR 55 126 -142 4 914 369 0 0 0 chr9 43227048 43227089 -80849083 + (GGGTG)n Simple_repeat Simple_repeat 3 43 0 4 914 600 14 0 0 chr9 43227787 43227856 -80848316 + (CTG)n Simple_repeat Simple_repeat 1 69 0 4 914 230 246 61 99 chr9 43228421 43228552 -80847620 + MTEa LTR MaLR 240 365 -14 4 914 589 276 114 15 chr9 43228842 43229044 -80847128 - B4A SINE B4 -70 222 1 4 914 394 238 204 40 chr9 43229101 43229236 -80846936 - MIR SINE MIR -66 202 54 4 914 1248 91 0 0 chr9 43229347 43229523 -80846649 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 4 914 294 29 0 0 chr9 43229523 43229558 -80846614 + (TTC)n Simple_repeat Simple_repeat 1 35 0 4 914 1231 61 0 0 chr9 43229558 43229705 -80846467 - B1_Mus1 SINE Alu -1 147 1 4 914 467 82 14 0 chr9 43231284 43231357 -80844815 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 914 420 191 0 0 chr9 43231693 43231782 -80844390 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 914 299 291 40 57 chr9 43232124 43232248 -80843924 + MIR SINE MIR 1 122 -86 5 914 216 67 0 0 chr9 43232411 43232441 -80843731 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 914 548 313 7 26 chr9 43232444 43232598 -80843574 - RSINE1 SINE B4 -3 162 12 5 914 1300 67 33 22 chr9 43232638 43232820 -80843352 + B2_Mm2 SINE B2 11 194 -1 5 914 664 190 282 0 chr9 43233660 43233823 -80842349 + B3 SINE B2 1 209 -7 5 914 200 297 0 51 chr9 43233828 43233906 -80842266 + GA-rich Low_complexity Low_complexity 3 76 0 5 914 267 329 112 53 chr9 43233976 43234146 -80842026 + MER21B LTR ERV1 256 435 -428 5 914 202 154 26 0 chr9 43234248 43234287 -80841885 + A-rich Low_complexity Low_complexity 1 40 0 5 914 270 260 47 65 chr9 43234290 43234397 -80841775 + MER21B LTR ERV1 625 729 -134 5 914 320 314 88 55 chr9 43234558 43234740 -80841432 + LTR16A1 LTR ERVL 222 409 -47 5 914 712 224 40 53 chr9 43234942 43235168 -80841004 - L1MA5 LINE L1 -20 6280 6058 5 914 235 354 142 0 chr9 43235714 43235827 -80840345 + MLT1K LTR MaLR 59 187 -408 5 914 394 296 9 0 chr9 43235844 43235959 -80840213 - Tigger5 DNA MER2_type 0 2406 2291 5 914 257 365 35 0 chr9 43235950 43236065 -80840107 - Tigger5 DNA MER2_type -2163 243 129 5 914 208 200 0 0 chr9 43237036 43237081 -80839091 + MIR SINE MIR 95 139 -123 5 914 257 51 0 25 chr9 43237908 43237948 -80838224 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 5 914 391 231 8 92 chr9 43238498 43238617 -80837555 - PB1D10 SINE Alu -3 114 6 5 914 662 168 11 25 chr9 43238680 43238805 -80837367 - B1_Mur2 SINE Alu 0 149 25 5 914 1209 259 61 42 chr9 43239129 43239605 -80836567 - L1ME1 LINE L1 -14 6165 5681 5 914 351 130 26 13 chr9 43239705 43239783 -80836389 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 5 914 1224 88 0 0 chr9 43239785 43239956 -80836216 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 5 914 1286 67 0 6 chr9 43239958 43240137 -80836035 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 5 914 766 225 0 0 chr9 43240172 43240301 -80835871 - B1_Mur1 SINE Alu -20 129 1 5 914 2266 235 109 44 chr9 43240311 43240930 -80835242 + RCHARR1 DNA MER1_type 7 670 -304 5 914 1425 86 16 0 chr9 43240930 43241117 -80835055 - B2_Mm2 SINE B2 -5 190 1 5 914 2266 235 109 44 chr9 43241117 43241197 -80834975 + RCHARR1 DNA MER1_type 671 751 -223 5 914 23 0 0 0 chr9 43241197 43241220 -80834952 + AT_rich Low_complexity Low_complexity 1 23 0 5 914 351 0 0 0 chr9 43241220 43241259 -80834913 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 914 369 321 27 0 chr9 43241260 43241372 -80834800 - RSINE1 SINE B4 -14 151 37 5 914 611 191 9 0 chr9 43241398 43241513 -80834659 - L1ME1 LINE L1 -693 5469 5354 5 914 414 0 0 0 chr9 43241635 43241681 -80834491 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 914 319 321 114 12 chr9 43242475 43242642 -80833530 + MIRb SINE MIR 9 192 -76 5 914 358 303 68 36 chr9 43242801 43242993 -80833179 + RLTR42-int LTR ERVK 1203 1400 -4122 5 914 390 226 23 11 chr9 43244130 43244305 -80831867 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 914 575 163 30 12 chr9 43244329 43244497 -80831675 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 914 339 175 0 0 chr9 43244510 43244567 -80831605 + (CATA)n Simple_repeat Simple_repeat 2 58 0 5 914 366 91 0 0 chr9 43244576 43244631 -80831541 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 914 507 342 18 37 chr9 43245059 43245223 -80830949 + RSINE1 SINE B4 5 165 0 5 914 606 216 0 0 chr9 43245224 43245395 -80830777 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 914 364 312 85 43 chr9 43245476 43245687 -80830485 - MIRb SINE MIR -30 238 19 5 914 233 313 12 12 chr9 43246031 43246115 -80830057 - L2b LINE L2 -185 3190 3107 5 914 209 297 75 17 chr9 43246205 43246325 -80829847 + L2a LINE L2 3297 3423 -3 5 914 689 293 43 28 chr9 43246958 43247169 -80829003 - RMER15 LTR ERVL -15 560 347 5 914 425 267 81 127 chr9 43247867 43248064 -80828108 + MER20 DNA MER1_type 28 215 -4 5 914 549 305 36 27 chr9 43248205 43248424 -80827748 + L3b LINE CR1 5 225 -257 5 914 1253 233 146 15 chr9 43251726 43252061 -80824111 + MTE2a LTR MaLR 1 379 0 5 914 575 51 13 0 chr9 43252609 43252688 -80823484 + (GGGA)n Simple_repeat Simple_repeat 3 82 0 5 914 459 0 0 0 chr9 43252735 43252786 -80823386 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 914 315 0 0 0 chr9 43252786 43252820 -80823352 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 915 272 143 0 18 chr9 43254119 43254176 -80821996 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 915 320 234 55 164 chr9 43254188 43254279 -80821893 - B4A SINE B4 0 292 216 5 915 195 42 0 0 chr9 43254279 43254303 -80821869 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5 915 320 234 55 164 chr9 43254303 43254339 -80821833 - B4A SINE B4 -77 215 180 5 915 396 0 0 0 chr9 43254339 43254383 -80821789 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 5 915 360 64 0 0 chr9 43254419 43254466 -80821706 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 915 928 263 5 5 chr9 43254467 43254673 -80821499 - B4A SINE B4 -78 214 9 5 915 441 0 0 0 chr9 43254957 43255006 -80821166 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 915 530 199 104 30 chr9 43255188 43255323 -80820849 + B3A SINE B2 3 147 -51 5 915 414 0 0 0 chr9 43255331 43255377 -80820795 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 915 225 327 179 68 chr9 43255470 43255883 -80820289 + MER34A LTR ERV1 73 531 -40 5 915 459 0 0 0 chr9 43256086 43256137 -80820035 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 915 2085 218 24 14 chr9 43256153 43256568 -80819604 + MTD LTR MaLR 1 419 0 5 915 221 380 8 77 chr9 43257393 43257510 -80818662 + L2b LINE L2 3240 3348 -27 5 915 792 305 116 59 chr9 43257524 43257783 -80818389 + L1MA4 LINE L1 5219 5464 -422 5 915 537 16 0 0 chr9 43257783 43257845 -80818327 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 915 942 254 107 17 chr9 43257845 43258104 -80818068 + L1MA4 LINE L1 5457 5779 -521 5 915 195 42 0 0 chr9 43258104 43258128 -80818044 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 915 942 251 105 15 chr9 43258128 43258216 -80817956 + L1MA4 LINE L1 5780 5887 -413 5 915 504 267 1 11 chr9 43258345 43258481 -80817691 + B3A SINE B2 1 134 -59 5 915 333 0 0 0 chr9 43258484 43258521 -80817651 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 915 225 361 21 50 chr9 43258909 43259049 -80817123 + MLT1K LTR MaLR 141 276 -319 5 915 367 385 94 81 chr9 43259409 43260079 -80816093 + MER21B LTR ERV1 29 707 -156 5 915 417 283 71 91 chr9 43260116 43260517 -80815655 + L1ME1 LINE L1 5620 6012 -166 5 915 541 59 0 0 chr9 43260550 43260618 -80815554 + B2_Mm2 SINE B2 1 68 -127 5 915 797 87 0 16 chr9 43260837 43260966 -80815206 + (GGA)n Simple_repeat Simple_repeat 2 128 0 5 915 191 286 0 0 chr9 43261110 43261152 -80815020 - L2 LINE L2 -558 2861 2820 5 915 393 84 42 0 chr9 43261229 43261300 -80814872 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 915 23 0 0 0 chr9 43262674 43262697 -80813475 + AT_rich Low_complexity Low_complexity 1 23 0 5 915 1233 266 54 38 chr9 43263144 43263570 -80812602 - LTR40a LTR ERVL -16 503 71 5 915 306 0 0 0 chr9 43263717 43263751 -80812421 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 915 284 294 193 0 chr9 43263830 43263949 -80812223 + MER5A DNA MER1_type 41 182 -7 5 915 271 345 39 54 chr9 43264027 43264201 -80811971 + L2b LINE L2 3019 3189 -198 5 915 325 329 0 32 chr9 43264218 43264375 -80811797 + (TATATG)n Simple_repeat Simple_repeat 3 154 0 5 915 1247 237 17 35 chr9 43264377 43264666 -80811506 - B4 SINE B4 -8 284 1 5 915 281 271 9 33 chr9 43264699 43264794 -80811378 - MLT1A0 LTR MaLR -235 139 45 5 915 1789 222 71 3 chr9 43264839 43265218 -80810954 - MLT-int LTR MaLR -2 1733 1329 5 915 489 325 117 67 chr9 43265363 43265804 -80810368 + RLTR26 LTR ERVK 14 523 -104 5 915 2155 287 51 85 chr9 43266112 43266440 -80809732 - MLT-int LTR MaLR -813 922 598 5 915 894 45 0 0 chr9 43266440 43266551 -80809621 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 5 915 2155 287 51 85 chr9 43266551 43266572 -80809600 - MLT-int LTR MaLR -1138 597 597 5 915 951 120 12 6 chr9 43266572 43266740 -80809432 + (TTCCC)n Simple_repeat Simple_repeat 2 170 0 5 915 2155 287 51 85 chr9 43266740 43267197 -80808975 - MLT-int LTR MaLR -1138 597 143 5 915 852 309 63 38 chr9 43267784 43268100 -80808072 - MLT1A0 LTR MaLR -5 360 37 5 915 209 250 154 55 chr9 43268133 43268243 -80807929 + L2b LINE L2 3250 3370 -5 5 915 240 256 118 32 chr9 43268615 43268708 -80807464 - MIRc SINE MIR -56 212 112 5 915 483 265 59 17 chr9 43269861 43269980 -80806192 - RSINE1 SINE B4 -24 141 18 5 915 210 160 240 0 chr9 43270211 43270261 -80805911 - B4 SINE B4 -204 88 27 5 915 396 0 0 0 chr9 43271210 43271254 -80804918 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 915 204 333 58 23 chr9 43271398 43271484 -80804688 - MIRb SINE MIR -14 254 166 5 915 333 254 26 19 chr9 43271876 43272141 -80804031 + (TG)n Simple_repeat Simple_repeat 1 267 0 5 915 190 81 26 26 chr9 43272194 43272232 -80803940 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 915 271 247 97 0 chr9 43272492 43272585 -80803587 - MIRb SINE MIR -94 174 73 5 915 192 256 91 83 chr9 43274084 43274216 -80801956 - MIRb SINE MIR -89 179 47 5 915 1037 111 0 6 chr9 43275916 43276080 -80800092 + (GAA)n Simple_repeat Simple_repeat 1 163 0 5 915 201 321 45 45 chr9 43276678 43276766 -80799406 - L2b LINE L2 -2 3373 3286 5 915 747 42 0 0 chr9 43276883 43276978 -80799194 + (GA)n Simple_repeat Simple_repeat 1 95 0 5 915 250 234 0 0 chr9 43276978 43277025 -80799147 + ID4 SINE ID 17 63 -20 5 915 180 219 80 27 chr9 43277129 43277204 -80798968 - MIRm SINE MIR -124 152 74 5 915 185 289 135 0 chr9 43279097 43279149 -80797023 - MER5B DNA MER1_type -30 148 90 5 915 1017 244 81 19 chr9 43279215 43279474 -80796698 - B4 SINE B4 -4 288 14 5 915 372 204 35 9 chr9 43279636 43279750 -80796422 + G-rich Low_complexity Low_complexity 2 118 0 5 915 237 384 36 36 chr9 43279832 43280056 -80796116 + MIRb SINE MIR 31 254 -14 6 915 190 27 25 75 chr9 43281115 43281155 -80795017 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 6 915 631 176 9 18 chr9 43281156 43281266 -80794906 - PB1D9 SINE Alu -1 119 11 6 915 235 250 101 14 chr9 43282687 43282756 -80793416 - MIRc SINE MIR -113 155 81 6 915 799 193 14 7 chr9 43283265 43283411 -80792761 - B1_Mur1 SINE Alu -1 148 2 6 915 325 323 21 0 chr9 43283529 43283622 -80792550 + BC1_Mm scRNA scRNA 1 95 -57 6 915 217 200 0 0 chr9 43283938 43283973 -80792199 + (CACG)n Simple_repeat Simple_repeat 2 36 0 6 915 284 272 9 28 chr9 43284441 43284547 -80791625 + C-rich Low_complexity Low_complexity 4 107 0 6 915 189 338 24 3 chr9 43285061 43285133 -80791039 + MIR SINE MIR 47 127 -141 6 915 899 227 38 19 chr9 43285443 43285654 -80790518 + B3 SINE B2 1 215 -1 6 915 581 271 6 49 chr9 43285667 43285699 -80790473 + RSINE1 SINE B4 3 31 -134 6 915 1643 31 0 20 chr9 43285699 43285896 -80790276 - B2_Mm1a SINE B2 0 193 1 6 915 581 271 6 49 chr9 43285896 43286026 -80790146 + RSINE1 SINE B4 32 158 -7 6 915 224 316 12 12 chr9 43286382 43286462 -80789710 + MIRm SINE MIR 197 276 0 6 915 192 97 0 0 chr9 43286470 43286501 -80789671 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 6 915 260 288 46 37 chr9 43288345 43288504 -80787668 + ORR1E LTR MaLR 202 359 -20 6 915 366 312 30 80 chr9 43288854 43289083 -80787089 - MIRb SINE MIR 0 268 38 6 915 274 354 62 0 chr9 43291015 43291145 -80785027 + Tigger12c DNA MER2_type 13 150 -584 6 915 1012 261 52 33 chr9 43291621 43291891 -80784281 - MLT1A0 LTR MaLR 0 365 91 6 915 293 188 0 80 chr9 43291931 43292006 -80784166 - B3 SINE B2 -4 212 144 6 915 304 120 0 0 chr9 43291984 43292034 -80784138 - B3 SINE B2 -8 208 159 6 915 245 152 0 0 chr9 43292033 43292079 -80784093 - B3 SINE B2 -8 208 163 6 915 542 244 178 22 chr9 43292082 43292108 -80784064 - B3 SINE B2 -8 208 183 6 915 351 0 0 0 chr9 43292108 43292147 -80784025 + (TATG)n Simple_repeat Simple_repeat 4 42 0 6 915 542 244 178 22 chr9 43292147 43292300 -80783872 - B3 SINE B2 -34 182 3 6 915 1258 177 36 47 chr9 43292342 43292620 -80783552 + RMER4B LTR ERVK 17 291 -294 6 915 819 221 188 28 chr9 43292667 43292955 -80783217 + RMER4B LTR ERVK 252 585 0 6 915 1079 217 105 110 chr9 43293028 43293391 -80782781 - MTE2a LTR MaLR 0 379 19 6 915 305 311 39 82 chr9 43293486 43293693 -80782479 - MER2 DNA MER2_type -1 344 147 6 915 223 150 77 21 chr9 43293710 43293853 -80782319 + (TA)n Simple_repeat Simple_repeat 1 151 0 6 915 308 352 28 9 chr9 43293854 43293963 -80782209 - PB1D10 SINE Alu -2 115 5 6 915 204 97 0 0 chr9 43294451 43294482 -80781690 + (G)n Simple_repeat Simple_repeat 1 31 0 6 915 208 275 28 28 chr9 43295999 43296070 -80780102 - MIRb SINE MIR -193 75 5 6 915 797 129 29 14 chr9 43296157 43296442 -80779730 + (TAGA)n Simple_repeat Simple_repeat 1 289 0 6 915 401 350 72 75 chr9 43296616 43297068 -80779104 + L2a LINE L2 2372 2815 -604 6 915 705 299 34 0 chr9 43297068 43297272 -80778900 + ID_B1 SINE B4 2 212 -12 6 915 401 305 168 46 chr9 43297272 43297738 -80778434 + L2a LINE L2 2816 3342 -84 6 915 185 293 68 17 chr9 43298662 43298721 -80777451 + MIRb SINE MIR 48 109 -159 6 915 255 103 0 0 chr9 43299845 43299884 -80776288 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 915 189 0 0 0 chr9 43300011 43300032 -80776140 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 6 915 868 261 144 53 chr9 43300065 43300328 -80775844 - B4 SINE B4 -5 287 1 6 915 378 0 0 0 chr9 43301362 43301404 -80774768 + (TTG)n Simple_repeat Simple_repeat 1 42 0 6 915 1302 7 0 0 chr9 43301404 43301551 -80774621 + (TTC)n Simple_repeat Simple_repeat 1 147 0 6 915 339 146 0 47 chr9 43301551 43301637 -80774535 + CT-rich Low_complexity Low_complexity 5 86 0 6 915 226 300 43 22 chr9 43301802 43301894 -80774278 - MIRc SINE MIR -70 198 105 6 915 539 248 79 16 chr9 43302390 43302517 -80773655 + B1F SINE Alu 15 149 0 6 915 430 322 71 33 chr9 43302797 43303009 -80773163 + L3 LINE CR1 3216 3435 -1054 6 915 234 156 0 0 chr9 43303847 43303892 -80772280 + CT-rich Low_complexity Low_complexity 1 45 0 6 915 240 318 16 49 chr9 43304195 43304380 -80771792 - HAL1 LINE L1 -55 2452 2274 6 915 965 208 45 10 chr9 43304686 43304885 -80771287 - ID_B1 SINE B4 -18 206 1 6 915 363 196 19 19 chr9 43304900 43305004 -80771168 + CT-rich Low_complexity Low_complexity 1 104 0 6 915 1109 118 0 6 chr9 43305004 43305183 -80770989 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 6 915 311 335 137 22 chr9 43305350 43305576 -80770596 - HAL1 LINE L1 -803 1704 1453 6 915 471 300 92 68 chr9 43305722 43305969 -80770203 - HAL1 LINE L1 -1245 1262 1011 6 915 330 26 0 0 chr9 43305969 43306008 -80770164 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 915 471 300 92 68 chr9 43306008 43306053 -80770119 - HAL1 LINE L1 -1497 1010 964 6 915 223 146 18 18 chr9 43306557 43306613 -80769559 + (CACCC)n Simple_repeat Simple_repeat 4 59 0 6 915 403 298 0 14 chr9 43306614 43306757 -80769415 + C-rich Low_complexity Low_complexity 3 143 0 6 915 325 314 25 0 chr9 43307078 43307199 -80768973 + MER5A1 DNA MER1_type 41 164 -2 6 915 313 269 61 152 chr9 43307211 43307474 -80768698 - L1M5 LINE L1 -2555 3591 3353 6 915 258 203 34 0 chr9 43307535 43307594 -80768578 + CT-rich Low_complexity Low_complexity 1 61 0 6 915 353 336 142 21 chr9 43307647 43308210 -80767962 - L1M5 LINE L1 -2993 3153 2523 6 915 414 0 0 0 chr9 43308246 43308292 -80767880 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 915 348 270 45 0 chr9 43308305 43308394 -80767778 - PB1D7 SINE Alu 0 120 28 6 915 237 259 32 86 chr9 43308378 43308471 -80767701 + RLTR25A LTR ERVK 476 563 -540 6 915 270 254 16 0 chr9 43308429 43308492 -80767680 + PB1D10 SINE Alu 45 108 -9 6 915 627 291 66 5 chr9 43308757 43308954 -80767218 - ID_B1 SINE B4 -15 209 1 6 915 248 170 55 36 chr9 43308961 43309016 -80767156 - PB1 SINE Alu 0 127 72 6 915 525 272 14 42 chr9 43308968 43309110 -80767062 - ID_B1 SINE B4 -6 218 81 6 915 443 292 36 0 chr9 43309425 43309562 -80766610 + L1MA6 LINE L1 6159 6300 0 6 915 248 294 14 14 chr9 43310050 43310119 -80766053 - MLT1G3 LTR MaLR -223 372 304 6 915 387 0 0 0 chr9 43310139 43310182 -80765990 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 915 477 0 0 0 chr9 43310182 43310234 -80765938 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 915 324 264 144 9 chr9 43310264 43310375 -80765797 - MLT1G3 LTR MaLR -467 128 3 6 915 209 57 29 0 chr9 43311316 43311351 -80764821 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 6 915 550 259 89 0 chr9 43311351 43311486 -80764686 - B1F2 SINE Alu -2 147 1 6 915 338 292 87 87 chr9 43311545 43311695 -80764477 - ID_B1 SINE B4 0 224 75 6 915 243 290 20 61 chr9 43311972 43312071 -80764101 - ID4 SINE ID -56 96 2 6 915 251 295 56 104 chr9 43313704 43313829 -80762343 - ORR1D2 LTR MaLR -250 120 2 6 915 2461 150 55 8 chr9 43315780 43316182 -80759990 - MTC LTR MaLR 0 421 1 6 915 6846 154 46 20 chr9 43316182 43317407 -80758765 - MTC-int LTR MaLR 0 1258 2 6 915 345 146 0 18 chr9 43317407 43317463 -80758709 - MTC LTR MaLR -1 406 352 6 915 1338 25 0 0 chr9 43317725 43317886 -80758286 + L1Md_F2 LINE L1 5650 5810 -772 6 915 492 248 0 0 chr9 43318277 43318516 -80757656 + CT-rich Low_complexity Low_complexity 1 239 0 6 915 335 274 107 33 chr9 43319560 43319681 -80756491 + MLT1A0 LTR MaLR 7 136 -229 6 915 280 336 25 25 chr9 43319819 43319906 -80756266 + MLT1A0 LTR MaLR 211 297 -68 6 915 200 59 29 0 chr9 43319906 43319940 -80756232 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 915 280 336 25 25 chr9 43319940 43319968 -80756204 + MLT1A0 LTR MaLR 298 325 -40 6 915 505 327 22 112 chr9 43319968 43320370 -80755802 + ORR1E LTR MaLR 4 370 0 6 915 198 323 106 12 chr9 43320839 43320999 -80755173 + L2c LINE L2 2702 2876 -543 6 915 224 376 78 33 chr9 43321164 43321406 -80754766 + L2c LINE L2 3065 3317 -70 6 915 1239 251 62 48 chr9 43322201 43322574 -80753598 - MTE2a LTR MaLR -1 378 1 6 915 207 350 90 0 chr9 43323391 43323491 -80752681 - MIRb SINE MIR -37 231 123 6 915 280 252 101 5 chr9 43323526 43323615 -80752557 + B1F SINE Alu 10 148 -1 6 915 428 347 7 7 chr9 43323648 43323799 -80752373 + B4A SINE B4 138 288 -4 6 915 199 206 27 93 chr9 43323933 43324008 -80752164 - MER5B DNA MER1_type -34 144 75 6 915 1056 276 113 14 chr9 43324377 43324722 -80751450 + MTEa LTR MaLR 1 379 0 6 915 246 287 49 26 chr9 43325058 43325167 -80751005 - MIRb SINE MIR -126 142 26 6 915 180 0 0 0 chr9 43325957 43325977 -80750195 + (T)n Simple_repeat Simple_repeat 1 20 0 6 915 200 333 14 0 chr9 43326105 43326177 -80749995 + MIRc SINE MIR 86 158 -110 6 915 415 274 39 79 chr9 43327692 43327819 -80748353 - B1F1 SINE Alu -2 147 26 6 915 489 330 0 0 chr9 43327821 43327933 -80748239 - PB1D10 SINE Alu -5 112 1 6 915 297 0 0 0 chr9 43328083 43328116 -80748056 + (TCC)n Simple_repeat Simple_repeat 2 34 0 6 915 711 65 0 0 chr9 43328116 43328209 -80747963 + (TC)n Simple_repeat Simple_repeat 1 93 0 6 915 199 93 47 0 chr9 43328221 43328264 -80747908 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 6 915 887 167 0 0 chr9 43328267 43328405 -80747767 - B1_Mur3 SINE Alu -1 148 11 6 915 536 307 9 52 chr9 43328405 43328477 -80747695 - ID_B1 SINE B4 -1 223 23 6 915 452 344 47 68 chr9 43328646 43328942 -80747230 + B4A SINE B4 3 292 0 6 915 479 235 29 0 chr9 43329022 43329124 -80747048 + PB1D10 SINE Alu 8 112 -5 6 915 234 200 17 52 chr9 43329124 43329182 -80746990 + GA-rich Low_complexity Low_complexity 4 59 0 6 915 371 284 0 40 chr9 43329461 43329560 -80746612 + PB1D10 SINE Alu 12 106 -11 6 915 205 320 53 0 chr9 43329891 43329966 -80746206 + MIRc SINE MIR 25 103 -165 6 915 387 0 0 0 chr9 43329967 43330010 -80746162 + (TCC)n Simple_repeat Simple_repeat 2 44 0 6 915 1362 84 0 11 chr9 43330032 43330213 -80745959 - B2_Mm2 SINE B2 -16 179 1 6 915 240 339 83 0 chr9 43330470 43330591 -80745581 - MIRb SINE MIR -80 188 58 6 915 258 326 77 77 chr9 43331379 43331522 -80744650 - MIR SINE MIR -113 149 7 7 915 298 329 63 38 chr9 43331737 43331792 -80744380 + MIRb SINE MIR 56 108 -160 7 915 1302 120 15 20 chr9 43331792 43331988 -80744184 - B2_Mm2 SINE B2 0 195 1 7 915 298 329 63 38 chr9 43331988 43332090 -80744082 + MIRb SINE MIR 109 216 -52 7 915 230 227 37 71 chr9 43333059 43333141 -80743031 + L2b LINE L2 3306 3383 -4 7 915 224 351 114 82 chr9 43334086 43334427 -80741745 - L2b LINE L2 0 3375 3024 7 915 191 399 58 18 chr9 43334482 43334653 -80741519 - L2b LINE L2 -457 2962 2785 7 915 191 36 0 35 chr9 43336150 43336179 -80739993 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 915 900 295 137 32 chr9 43336341 43336751 -80739421 + LTR16E2 LTR ERVL 116 568 0 7 915 354 364 90 24 chr9 43337780 43338191 -80737981 + ERVL-B4-int LTR ERVL 2012 2449 -3218 7 915 258 388 74 22 chr9 43338240 43338551 -80737621 + ERVL-B4-int LTR ERVL 2538 2864 -2803 7 915 324 0 0 0 chr9 43338685 43338721 -80737451 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 915 673 236 35 21 chr9 43338735 43338878 -80737294 - RSINE1 SINE B4 -17 148 4 7 915 391 352 80 16 chr9 43339069 43339456 -80736716 + ERVL-B4-int LTR ERVL 3972 4383 -1331 7 915 315 113 0 0 chr9 43341708 43341761 -80734411 + (TTTG)n Simple_repeat Simple_repeat 3 55 0 7 915 423 266 25 146 chr9 43341761 43342100 -80734072 - RMER15 LTR ERVL -155 420 3 7 915 1189 304 142 50 chr9 43342141 43343163 -80733009 - L2 LINE L2 -1234 2185 1070 7 915 394 250 84 19 chr9 43344136 43344291 -80731881 - L2 LINE L2 -2768 651 487 7 915 589 253 134 35 chr9 43346643 43346825 -80729347 - B3 SINE B2 0 216 28 7 915 536 249 122 21 chr9 43346842 43347031 -80729141 - B3 SINE B2 0 216 9 7 915 795 242 10 67 chr9 43347468 43347676 -80728496 + B3A SINE B2 2 197 -1 7 915 351 0 0 0 chr9 43348072 43348111 -80728061 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 7 915 259 75 36 36 chr9 43348227 43348282 -80727890 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 7 915 230 338 174 7 chr9 43348569 43348733 -80727439 - MIRb SINE MIR -29 233 50 7 915 286 292 53 15 chr9 43348913 43349045 -80727127 - L3 LINE CR1 -508 3981 3845 7 915 260 360 88 24 chr9 43349148 43349353 -80726819 - L3 LINE CR1 -790 3699 3482 7 915 246 348 28 56 chr9 43349895 43350038 -80726134 - MLT1L LTR MaLR -36 574 436 7 915 184 289 106 101 chr9 43351498 43351725 -80724447 - L3 LINE CR1 -1965 2524 2297 7 915 1460 65 16 5 chr9 43351908 43352095 -80724077 - B2_Mm2 SINE B2 -6 189 1 7 915 379 347 56 28 chr9 43352168 43352346 -80723826 - MLT1H1 LTR MaLR -336 219 37 7 915 2272 187 17 5 chr9 43352639 43353048 -80723124 - MTD LTR MaLR 0 419 6 7 915 258 105 0 0 chr9 43356136 43356174 -80719998 + (A)n Simple_repeat Simple_repeat 1 38 0 7 915 180 0 0 0 chr9 43356180 43356200 -80719972 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 915 414 190 0 48 chr9 43358741 43358824 -80717348 + 7SLRNA srpRNA srpRNA 153 231 -83 7 915 563 324 105 8 chr9 43359004 43359262 -80716910 - B4A SINE B4 -8 284 2 7 915 1317 236 66 11 chr9 43359942 43360323 -80715849 + L1MA6 LINE L1 5898 6299 -1 7 915 1074 16 0 0 chr9 43360844 43360968 -80715204 + (TCTCCC)n Simple_repeat Simple_repeat 3 126 0 7 915 611 232 63 35 chr9 43361119 43361138 -80715034 - B1_Mur2 SINE Alu -2 147 130 7 915 195 42 0 0 chr9 43361138 43361162 -80715010 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 7 915 267 31 0 0 chr9 43361162 43361194 -80714978 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 7 915 611 232 63 35 chr9 43361194 43361316 -80714856 - B1_Mur2 SINE Alu -20 129 2 7 915 341 304 65 29 chr9 43362908 43363047 -80713125 + MIRb SINE MIR 125 268 0 7 915 327 177 0 0 chr9 43364409 43364471 -80711701 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 915 2152 113 19 12 chr9 43364989 43365312 -80710860 + ORR1A3 LTR MaLR 1 325 -1 7 915 1313 148 9 5 chr9 43365373 43365583 -80710589 + URR1A DNA MER1_type 15 225 -1 7 915 475 243 72 22 chr9 43365938 43366077 -80710095 - Charlie13a DNA Charlie -170 1344 1199 7 915 409 266 83 30 chr9 43366274 43366406 -80709766 - Charlie13a DNA Charlie -781 733 595 7 915 257 335 62 37 chr9 43366615 43366776 -80709396 - Charlie13a DNA Charlie -1330 184 20 7 915 1123 53 0 0 chr9 43367878 43368010 -80708162 - B1_Mus2 SINE Alu -15 132 1 7 915 540 200 8 50 chr9 43368731 43368852 -80707320 - PB1D10 SINE Alu -1 116 1 7 915 458 245 57 14 chr9 43368877 43369018 -80707154 - B1F SINE Alu 0 149 3 7 915 298 252 35 99 chr9 43369179 43369351 -80706821 + L1MD2 LINE L1 6176 6336 -23 7 915 222 293 0 0 chr9 43369705 43369763 -80706409 + MER5B DNA MER1_type 1 58 -120 7 915 376 295 121 0 chr9 43371747 43371913 -80704259 + MIRb SINE MIR 77 262 -6 7 915 194 246 197 0 chr9 43372094 43372155 -80704017 - MIRb SINE MIR -23 245 173 7 915 469 306 62 12 chr9 43373081 43373243 -80702929 - LTR16A1 LTR ERVL -134 322 153 7 915 1150 82 0 7 chr9 43374741 43374888 -80701284 - B1_Mus1 SINE Alu 0 148 3 7 915 548 299 54 89 chr9 43375172 43375396 -80700776 + B3A SINE B2 1 216 0 7 915 212 304 12 25 chr9 43376129 43376210 -80699962 - L2a LINE L2 -8 3418 3339 7 915 719 310 19 0 chr9 43376640 43376853 -80699319 - ID_B1 SINE B4 -3 221 5 7 915 293 363 123 59 chr9 43379034 43379391 -80696781 - LTR33A LTR ERVL -131 389 10 7 915 191 329 61 0 chr9 43379660 43379742 -80696430 + MIR SINE MIR 55 141 -67 7 915 323 339 58 44 chr9 43379888 43380196 -80695976 - L2b LINE L2 -93 3282 2969 7 915 206 337 154 26 chr9 43380335 43380756 -80695416 - L2b LINE L2 -818 2601 2127 7 915 234 0 0 0 chr9 43380992 43381018 -80695154 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 915 612 258 139 66 chr9 43381047 43381213 -80694959 - B3 SINE B2 -5 190 13 7 915 312 83 0 0 chr9 43381241 43381289 -80694883 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 915 350 229 83 12 chr9 43381294 43381378 -80694794 - B3A SINE B2 -23 175 86 7 915 608 295 20 26 chr9 43381457 43381652 -80694520 - MER2 DNA MER2_type -18 327 134 7 915 278 302 61 143 chr9 43381773 43381920 -80694252 - MER2 DNA MER2_type -210 135 1 7 915 266 310 104 50 chr9 43382216 43382515 -80693657 + L1MD3 LINE L1 4416 4730 -1416 7 915 216 67 0 0 chr9 43382892 43382922 -80693250 + (A)n Simple_repeat Simple_repeat 1 30 0 7 915 580 206 110 8 chr9 43383016 43383143 -80693029 + B1_Mur3 SINE Alu 1 140 -9 7 915 220 289 19 0 chr9 43383385 43383437 -80692735 + ID4_ SINE ID 27 79 -4 7 915 232 174 0 21 chr9 43383521 43383568 -80692604 + U2 snRNA snRNA 1 46 -142 7 915 383 330 44 24 chr9 43383652 43383857 -80692315 + L1MD3 LINE L1 5718 5926 -2069 7 915 209 316 150 20 chr9 43384207 43384307 -80691865 + MIRc SINE MIR 31 143 -125 7 114 2611 157 65 55 chr9 43384410 43384977 -80691195 - RMER1B Other Other 0 1066 494 7 916 835 137 38 0 chr9 43385019 43385150 -80691022 + B1_Mus2 SINE Alu 12 147 0 7 916 423 132 0 0 chr9 43385150 43385218 -80690954 + (A)n Simple_repeat Simple_repeat 1 68 0 7 916 2181 116 28 3 chr9 43385236 43385555 -80690617 + ORR1A2 LTR MaLR 1 327 0 7 916 538 262 158 89 chr9 43385566 43385813 -80690359 + B4A SINE B4 11 274 -18 7 916 306 106 0 0 chr9 43386913 43386960 -80689212 + (TTG)n Simple_repeat Simple_repeat 1 47 0 7 916 193 301 55 88 chr9 43386962 43387053 -80689119 + L2a LINE L2 3338 3425 -1 7 916 737 339 67 18 chr9 43387091 43387433 -80688739 + MLT1A0 LTR MaLR 7 365 0 7 916 186 71 0 0 chr9 43388147 43388175 -80687997 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 7 916 1082 122 4 4 chr9 43389468 43389698 -80686474 + (TCC)n Simple_repeat Simple_repeat 1 229 0 7 916 299 337 13 0 chr9 43390205 43390312 -80685860 + PB1D10 SINE Alu 5 120 -29 7 916 540 276 25 49 chr9 43390312 43390536 -80685636 + B4 SINE B4 77 277 -15 7 916 2019 100 21 56 chr9 43391330 43391669 -80684503 + ORR1A2 LTR MaLR 1 327 0 7 916 344 227 160 30 chr9 43392298 43392398 -80683774 + ORR1E LTR MaLR 265 377 -1 7 916 501 236 0 0 chr9 43393139 43393287 -80682885 + (TG)n Simple_repeat Simple_repeat 1 148 0 7 916 619 247 104 61 chr9 43393351 43393631 -80682541 - B4A SINE B4 0 292 1 7 916 488 335 43 24 chr9 43393885 43394096 -80682076 - Charlie19a DNA Charlie -153 233 19 7 916 183 229 0 0 chr9 43394614 43394649 -80681523 - MIRm SINE MIR -17 259 225 7 916 1154 260 25 0 chr9 43395123 43395400 -80680772 - B4 SINE B4 -4 288 5 7 916 318 191 0 42 chr9 43396289 43396360 -80679812 - MTEa LTR MaLR -56 323 256 7 916 207 0 0 0 chr9 43396562 43396585 -80679587 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 916 5016 64 12 9 chr9 43396599 43397276 -80678896 - L1Md_F2 LINE L1 -14 6568 5890 7 916 1065 147 16 5 chr9 43397597 43397782 -80678390 - URR1A DNA MER1_type 0 226 40 7 916 294 240 93 0 chr9 43397924 43397999 -80678173 + PB1D10 SINE Alu 27 108 -9 7 916 273 348 38 13 chr9 43398445 43398602 -80677570 + MIRb SINE MIR 2 162 -106 7 916 389 272 115 15 chr9 43399041 43399214 -80676958 + MLT1J LTR MaLR 3 192 -320 7 916 358 284 112 65 chr9 43399377 43399592 -80676580 + MLT1J LTR MaLR 288 512 0 7 916 334 320 65 43 chr9 43399741 43399927 -80676245 - MIRc SINE MIR -38 230 41 7 916 1076 251 66 36 chr9 43400040 43400404 -80675768 - L1MB1 LINE L1 0 6168 5794 7 916 216 349 71 32 chr9 43402568 43402722 -80673450 - MIR SINE MIR -89 173 14 7 916 224 375 10 0 chr9 43402756 43402852 -80673320 + (CA)n Simple_repeat Simple_repeat 2 98 0 7 916 203 125 25 0 chr9 43402952 43402992 -80673180 + (TCTCCC)n Simple_repeat Simple_repeat 4 44 0 7 916 531 225 0 0 chr9 43403344 43403513 -80672659 + (CA)n Simple_repeat Simple_repeat 2 170 0 7 916 349 43 0 21 chr9 43403524 43403572 -80672600 + HAL1-3A_ME LINE L1 1976 2022 -836 7 916 218 337 0 0 chr9 43404049 43404141 -80672031 + C-rich Low_complexity Low_complexity 1 92 0 7 916 414 0 0 0 chr9 43404343 43404389 -80671783 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 916 245 29 29 0 chr9 43404469 43404503 -80671669 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 916 376 282 0 28 chr9 43405341 43405447 -80670725 + ID_B1 SINE B4 77 179 -45 8 916 487 257 0 18 chr9 43405355 43405466 -80670706 + PB1D10 SINE Alu 9 117 0 8 916 192 257 0 0 chr9 43405469 43405539 -80670633 + GA-rich Low_complexity Low_complexity 4 73 0 8 916 201 353 19 56 chr9 43405670 43405778 -80670394 - L2b LINE L2 -5 3370 3267 8 916 1367 209 110 13 chr9 43410497 43410879 -80665293 - MTD LTR MaLR 0 419 1 8 916 276 370 22 0 chr9 43412675 43412767 -80663405 - MIRc SINE MIR -90 178 85 8 916 389 184 131 10 chr9 43413700 43413799 -80662373 - MER117 DNA MER1_type -43 154 44 8 916 243 358 70 11 chr9 43413836 43414041 -80662131 + MIRb SINE MIR 13 231 -37 8 916 413 66 0 16 chr9 43414194 43414256 -80661916 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 916 544 237 135 48 chr9 43414269 43414477 -80661695 + LTR85a LTR Gypsy? 14 239 -463 8 916 257 264 32 21 chr9 43414755 43414848 -80661324 + L1ME1 LINE L1 6077 6170 -9 8 916 292 190 25 0 chr9 43415177 43415256 -80660916 + CT-rich Low_complexity Low_complexity 2 82 0 8 916 1033 110 17 11 chr9 43415257 43415432 -80660740 + (TCTCCC)n Simple_repeat Simple_repeat 3 178 0 8 916 919 300 19 23 chr9 43415661 43415924 -80660248 - B4 SINE B4 -30 262 1 8 916 269 326 0 11 chr9 43416331 43416421 -80659751 + G-rich Low_complexity Low_complexity 5 93 0 8 916 214 296 102 0 chr9 43416761 43416859 -80659313 - MIRb SINE MIR -95 173 66 8 916 763 131 15 0 chr9 43416859 43416996 -80659176 + (GGATG)n Simple_repeat Simple_repeat 5 143 0 8 916 290 242 115 26 chr9 43417744 43417863 -80658309 + MLT1A LTR MaLR 216 358 -32 8 916 548 349 38 42 chr9 43417885 43418026 -80658146 + MER2 DNA MER2_type 25 174 -171 8 916 276 275 0 14 chr9 43418026 43418096 -80658076 - ID4 SINE ID -13 70 2 8 916 548 349 38 42 chr9 43418096 43418193 -80657979 + MER2 DNA MER2_type 175 262 -83 8 916 513 315 6 41 chr9 43418223 43418392 -80657780 - RSINE1 SINE B4 0 165 3 8 916 252 292 15 0 chr9 43418392 43418457 -80657715 + MER2 DNA MER2_type 249 314 -31 8 916 883 167 0 0 chr9 43419292 43419436 -80656736 + B1_Mur4 SINE Alu 5 148 -2 8 916 519 280 61 0 chr9 43420081 43420213 -80655959 + RSINE1 SINE B4 11 150 -15 8 916 432 0 0 0 chr9 43420565 43420613 -80655559 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 916 1406 125 9 13 chr9 43420623 43420850 -80655322 + URR1A DNA MER1_type 1 226 0 8 916 187 204 74 0 chr9 43423137 43423191 -80652981 - L3b LINE CR1 -278 204 147 8 916 488 206 20 0 chr9 43423330 43423432 -80652740 - PB1D10 SINE Alu -12 105 2 8 916 242 276 219 0 chr9 43423797 43423902 -80652270 + LTR16A LTR ERVL 324 451 0 8 916 335 278 31 10 chr9 43424829 43424927 -80651245 + MIRb SINE MIR 69 168 -100 8 916 252 221 32 24 chr9 43426150 43426275 -80649897 + GA-rich Low_complexity Low_complexity 1 126 0 8 916 281 26 26 0 chr9 43426574 43426612 -80649560 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 8 916 398 261 49 32 chr9 43426613 43426736 -80649436 - B1F1 SINE Alu -14 135 11 8 916 1059 312 40 0 chr9 43426920 43427224 -80648948 + MLT1A0 LTR MaLR 12 327 -38 8 916 695 289 54 0 chr9 43427416 43427620 -80648552 + ID_B1 SINE B4 2 216 -8 8 916 690 356 39 22 chr9 43428068 43428427 -80647745 - L3 LINE CR1 -295 4194 3830 8 916 417 391 30 26 chr9 43428427 43428692 -80647480 - L3 LINE CR1 -1052 3437 3172 8 916 185 182 0 0 chr9 43429649 43429682 -80646490 + L3 LINE CR1 4450 4482 -7 8 916 595 38 83 0 chr9 43431378 43431510 -80644662 + (TC)n Simple_repeat Simple_repeat 1 143 0 8 916 692 273 12 6 chr9 43431952 43432105 -80644067 - MTE2a LTR MaLR -5 374 221 8 916 681 228 0 7 chr9 43432105 43432242 -80643930 + B1_Mur1 SINE Alu 1 136 -13 8 916 763 230 4 140 chr9 43432276 43432504 -80643668 - MTE2a LTR MaLR -182 197 1 8 916 590 297 82 5 chr9 43433489 43433685 -80642487 + ID_B1 SINE B4 10 220 -4 8 916 245 388 15 8 chr9 43435594 43435724 -80640448 + L2c LINE L2 3078 3208 -179 8 916 238 350 93 16 chr9 43436155 43436338 -80639834 - LTR81C LTR ERV1? -420 733 537 8 916 300 289 0 0 chr9 43437644 43437720 -80638452 + PB1D10 SINE Alu 1 76 -41 8 916 550 258 0 8 chr9 43437654 43437779 -80638393 + ID_B1 SINE B4 92 215 -9 8 916 357 24 0 0 chr9 43438027 43438069 -80638103 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 8 916 2737 256 118 61 chr9 43438258 43439083 -80637089 + Lx8 LINE L1 6358 7227 -246 8 916 2020 102 20 67 chr9 43439083 43439428 -80636744 - ORR1A4 LTR MaLR 0 329 1 8 916 2737 256 118 61 chr9 43439428 43439516 -80636656 + Lx8 LINE L1 7228 7323 -150 8 916 375 23 0 0 chr9 43439521 43439565 -80636607 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 916 918 42 0 0 chr9 43439567 43439686 -80636486 + (GA)n Simple_repeat Simple_repeat 1 119 0 8 916 450 0 0 0 chr9 43439752 43439802 -80636370 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 916 336 306 56 25 chr9 43439862 43440023 -80636149 - MLT1K LTR MaLR -55 540 375 8 916 866 235 104 81 chr9 43440410 43440757 -80635415 - ORR1E LTR MaLR -4 355 1 8 916 416 267 22 29 chr9 43440831 43440970 -80635202 + CT-rich Low_complexity Low_complexity 1 138 0 8 916 650 47 12 0 chr9 43441463 43441549 -80634623 + (GA)n Simple_repeat Simple_repeat 2 88 0 8 916 258 361 62 40 chr9 43442853 43443078 -80633094 - L1MEg LINE L1 -5028 1056 827 8 916 745 277 9 37 chr9 43443087 43443155 -80633017 - B3 SINE B2 -8 208 147 8 916 422 36 0 18 chr9 43443155 43443212 -80632960 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 916 745 277 9 37 chr9 43443212 43443357 -80632815 - B3 SINE B2 -70 146 1 8 916 276 53 0 0 chr9 43443428 43443466 -80632706 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 916 189 94 0 0 chr9 43443466 43443498 -80632674 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 916 621 307 6 6 chr9 43443509 43443673 -80632499 - B3A SINE B2 -34 164 1 8 916 693 286 21 11 chr9 43443690 43443877 -80632295 - B3A SINE B2 -3 195 7 8 916 1125 51 25 0 chr9 43444271 43444429 -80631743 + B2_Mm2 SINE B2 34 195 0 8 916 265 304 68 77 chr9 43444738 43444959 -80631213 + MER102c DNA MER1_type 99 317 -14 8 916 351 82 0 0 chr9 43445700 43445749 -80630423 + HAL1-3A_ME LINE L1 1970 2018 -840 8 916 228 172 0 0 chr9 43445779 43445837 -80630335 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 916 188 192 0 48 chr9 43445883 43445908 -80630264 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 916 221 53 53 0 chr9 43445908 43445946 -80630226 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 8 916 188 192 0 48 chr9 43445946 43446024 -80630148 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 916 276 155 0 0 chr9 43446026 43446097 -80630075 + CT-rich Low_complexity Low_complexity 2 72 0 8 916 1191 72 0 0 chr9 43446100 43446280 -80629892 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 916 261 0 0 0 chr9 43446280 43446308 -80629864 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 916 180 0 0 0 chr9 43446622 43446642 -80629530 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 916 486 311 156 56 chr9 43447397 43447644 -80628528 + MLT1A1 LTR MaLR 52 342 -66 8 916 219 36 0 0 chr9 43447644 43447672 -80628500 + (TTG)n Simple_repeat Simple_repeat 1 28 0 8 916 486 311 156 56 chr9 43447672 43447744 -80628428 + MLT1A1 LTR MaLR 343 403 -5 8 916 243 262 107 48 chr9 43447746 43447830 -80628342 - MTE2a LTR MaLR -1 378 290 8 916 416 292 74 77 chr9 43448106 43448463 -80627709 - ORR1E LTR MaLR -4 370 7 8 916 672 281 59 59 chr9 43448897 43448978 -80627194 + B4A SINE B4 1 96 -196 8 916 484 15 15 15 chr9 43448978 43449044 -80627128 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 916 672 281 59 59 chr9 43449044 43449176 -80626996 + B4A SINE B4 97 223 -69 8 916 453 302 107 15 chr9 43449176 43449381 -80626791 + ID_B1 SINE B4 1 224 0 8 916 672 281 59 59 chr9 43449381 43449453 -80626719 + B4A SINE B4 224 287 -5 8 916 225 0 0 0 chr9 43449517 43449542 -80626630 + (TA)n Simple_repeat Simple_repeat 1 25 0 8 916 25 51 0 0 chr9 43450492 43450531 -80625641 + AT_rich Low_complexity Low_complexity 1 39 0 8 916 227 256 0 0 chr9 43450613 43450656 -80625516 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 916 301 184 0 0 chr9 43450663 43450712 -80625460 + HAL1-3A_ME LINE L1 1975 2023 -835 8 916 233 29 29 0 chr9 43451353 43451387 -80624785 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 8 916 583 275 7 0 chr9 43451493 43451635 -80624537 - B1_Mur1 SINE Alu 0 149 7 8 916 750 32 0 0 chr9 43451652 43451745 -80624427 + (GTTTG)n Simple_repeat Simple_repeat 2 94 0 8 916 1063 65 7 0 chr9 43451745 43451884 -80624288 - B1_Mus1 SINE Alu -7 141 2 8 916 1214 31 12 0 chr9 43453313 43453474 -80622698 + L1Md_A LINE L1 6419 6581 -1 8 916 242 228 0 0 chr9 43453478 43453535 -80622637 + A-rich Low_complexity Low_complexity 1 57 0 8 916 317 302 20 30 chr9 43453646 43453745 -80622427 - L1MEf LINE L1 -4137 2063 1966 8 916 375 23 0 0 chr9 43453842 43453886 -80622286 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 916 242 393 76 45 chr9 43453887 43454044 -80622128 - RSINE1 SINE B4 -1 164 3 8 916 675 294 70 4 chr9 43454044 43454241 -80621931 - B4A SINE B4 -60 232 21 8 916 213 39 0 0 chr9 43454276 43454302 -80621870 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 916 429 328 110 17 chr9 43454305 43454541 -80621631 - B4A SINE B4 -8 284 27 8 916 8183 34 2 1 chr9 43454541 43455847 -80620325 - L1Md_F3 LINE L1 0 6584 5277 8 916 673 230 15 0 chr9 43455885 43456020 -80620152 - B1F SINE Alu 0 149 13 8 916 351 268 39 115 chr9 43455887 43456043 -80620129 - B4 SINE B4 -69 223 80 8 916 225 250 0 0 chr9 43456080 43456128 -80620044 + L1ME3A LINE L1 4915 4962 -1184 8 916 333 270 53 26 chr9 43456128 43456242 -80619930 - MLT1A LTR MaLR 0 374 258 8 916 887 103 33 46 chr9 43456457 43456609 -80619563 - B1_Mur4 SINE Alu 0 150 1 8 916 394 280 41 12 chr9 43456681 43456851 -80619321 + L1ME3A LINE L1 4958 5132 -1014 8 916 374 248 36 18 chr9 43456920 43457031 -80619141 + PB1D7 SINE Alu 1 113 -7 9 916 721 140 7 7 chr9 43457048 43457185 -80618987 + (TAGA)n Simple_repeat Simple_repeat 3 139 0 9 916 555 162 0 0 chr9 43457178 43457277 -80618895 + (TGGG)n Simple_repeat Simple_repeat 2 100 0 9 916 831 335 84 41 chr9 43457352 43458080 -80618092 + L1MC4 LINE L1 7139 7897 -145 9 916 876 92 0 0 chr9 43458084 43458225 -80617947 + (TG)n Simple_repeat Simple_repeat 2 142 0 9 916 814 294 38 44 chr9 43458311 43458752 -80617420 + L1ME3A LINE L1 5152 5586 -587 8 916 595 295 34 55 chr9 43458752 43458989 -80617183 - MLT1E LTR MaLR 0 653 422 9 916 681 285 52 25 chr9 43459283 43459610 -80616562 + L1ME3A LINE L1 5662 5996 -177 8 916 546 237 45 32 chr9 43459823 43459942 -80616230 + RSINE1 SINE B4 3 120 -45 9 916 227 73 49 0 chr9 43459942 43459983 -80616189 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 9 916 546 237 45 32 chr9 43459983 43460020 -80616152 + RSINE1 SINE B4 121 161 -4 9 916 27 0 0 0 chr9 43460043 43460070 -80616102 + AT_rich Low_complexity Low_complexity 1 27 0 9 916 967 193 118 5 chr9 43460113 43460316 -80615856 - URR1A DNA MER1_type 0 226 1 9 916 208 311 144 10 chr9 43460569 43460673 -80615499 + L2a LINE L2 3299 3416 -10 9 916 246 283 0 0 chr9 43460709 43460801 -80615371 + (CA)n Simple_repeat Simple_repeat 2 93 0 9 916 576 256 7 28 chr9 43461775 43461925 -80614247 + B1F1 SINE Alu 3 148 -1 9 916 247 296 177 14 chr9 43462193 43462340 -80613832 + MER5A DNA MER1_type 1 171 -18 9 916 2835 148 52 4 chr9 43463092 43463595 -80612577 + Lx LINE L1 6116 6642 -12 9 916 447 185 0 0 chr9 43463600 43463692 -80612480 + GA-rich Low_complexity Low_complexity 5 96 0 9 916 627 185 32 16 chr9 43465118 43465244 -80610928 - MTC LTR MaLR 0 421 294 9 916 614 132 0 7 chr9 43465244 43465381 -80610791 + (TTC)n Simple_repeat Simple_repeat 2 137 0 9 916 351 0 0 0 chr9 43465382 43465421 -80610751 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 916 1138 36 0 0 chr9 43465421 43465559 -80610613 - B1_Mm SINE Alu -9 138 1 9 916 1025 137 98 0 chr9 43465559 43465742 -80610430 - MTC LTR MaLR -212 209 9 9 916 243 0 0 0 chr9 43466384 43466411 -80609761 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 916 308 260 13 0 chr9 43466972 43467049 -80609123 - ID4 SINE ID -3 80 3 9 916 314 222 32 32 chr9 43470093 43470186 -80605986 - MIRb SINE MIR -71 197 105 9 916 1143 42 0 0 chr9 43470469 43470592 -80605580 + (TTC)n Simple_repeat Simple_repeat 1 123 0 9 916 1329 73 0 0 chr9 43470592 43470770 -80605402 + (TCC)n Simple_repeat Simple_repeat 3 180 0 9 916 1143 42 0 0 chr9 43470770 43470789 -80605383 + (TTC)n Simple_repeat Simple_repeat 3 21 0 9 916 486 0 0 0 chr9 43471625 43471679 -80604493 + (TC)n Simple_repeat Simple_repeat 1 54 0 9 916 867 255 73 111 chr9 43472326 43472689 -80603483 - ORR1E LTR MaLR -1 378 4 9 916 484 298 226 29 chr9 43473951 43474328 -80601844 - MLT1K LTR MaLR -13 582 132 9 916 296 210 0 23 chr9 43474569 43474704 -80601468 + CT-rich Low_complexity Low_complexity 1 131 0 9 916 354 292 0 36 chr9 43475252 43475419 -80600753 + GA-rich Low_complexity Low_complexity 2 162 0 9 916 618 26 0 0 chr9 43476124 43476200 -80599972 + (CA)n Simple_repeat Simple_repeat 2 77 0 9 916 927 179 101 20 chr9 43477122 43477321 -80598851 + ID_B1 SINE B4 9 223 -1 9 916 1137 68 0 0 chr9 43478265 43478412 -80597760 + B1_Mus1 SINE Alu 1 147 -1 9 916 213 39 0 0 chr9 43478418 43478444 -80597728 + (GAA)n Simple_repeat Simple_repeat 2 27 0 9 916 204 319 29 0 chr9 43479424 43479493 -80596679 + MIRc SINE MIR 112 182 -86 9 916 293 319 0 0 chr9 43480872 43480966 -80595206 + (CATA)n Simple_repeat Simple_repeat 3 96 0 9 916 262 250 0 26 chr9 43480965 43481032 -80595140 + GA-rich Low_complexity Low_complexity 4 68 0 9 916 1142 112 6 0 chr9 43481032 43481210 -80594962 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 9 916 396 0 0 0 chr9 43481309 43481353 -80594819 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 916 183 42 0 0 chr9 43482454 43482478 -80593694 + (CCTG)n Simple_repeat Simple_repeat 2 25 0 9 916 1646 97 18 43 chr9 43483115 43483395 -80592777 + L1_Mus3 LINE L1 6363 6635 -3 9 916 930 136 0 0 chr9 43483395 43483550 -80592622 + (GGAA)n Simple_repeat Simple_repeat 3 157 0 9 916 333 340 80 15 chr9 43484014 43484214 -80591958 - MLT1A0 LTR MaLR -152 213 1 9 916 277 244 53 43 chr9 43484696 43484790 -80591382 - MLT1C LTR MaLR -27 440 346 9 916 1214 95 0 6 chr9 43485008 43485188 -80590984 + (TTC)n Simple_repeat Simple_repeat 2 180 0 9 916 318 235 144 58 chr9 43485188 43485292 -80590880 - PB1D9 SINE Alu -7 113 1 9 916 22 0 0 0 chr9 43485292 43485314 -80590858 + AT_rich Low_complexity Low_complexity 1 22 0 9 916 1650 39 0 0 chr9 43485319 43485526 -80590646 + L1Md_T LINE L1 6376 6582 0 9 916 366 23 0 0 chr9 43485533 43485576 -80590596 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 916 615 172 0 32 chr9 43485576 43485702 -80590470 - RSINE1 SINE B4 -40 125 4 9 916 240 59 0 0 chr9 43485738 43485772 -80590400 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 916 626 228 0 29 chr9 43485774 43485914 -80590258 - B1_Mur1 SINE Alu -13 136 1 9 916 307 257 78 52 chr9 43486609 43486724 -80589448 + PB1D9 SINE Alu 1 118 -2 9 916 243 0 0 0 chr9 43488310 43488337 -80587835 + (T)n Simple_repeat Simple_repeat 1 27 0 9 916 268 93 0 44 chr9 43488348 43488393 -80587779 - PB1D10 SINE Alu 0 117 75 9 916 226 254 0 95 chr9 43488427 43488501 -80587671 - B4A SINE B4 -225 67 1 9 916 611 205 16 8 chr9 43488536 43488664 -80587508 - B1F SINE Alu -7 142 14 9 916 1310 253 38 74 chr9 43488733 43489126 -80587046 - MTEa LTR MaLR 0 379 1 9 916 230 250 0 62 chr9 43489127 43489208 -80586964 - PB1 SINE Alu -30 97 22 9 916 742 247 84 21 chr9 43489996 43490204 -80585968 + ID_B1 SINE B4 1 217 -7 9 916 272 279 126 39 chr9 43490406 43490533 -80585639 + MIRb SINE MIR 124 261 -7 9 916 317 93 19 0 chr9 43490652 43490706 -80585466 + (TATG)n Simple_repeat Simple_repeat 4 58 0 9 916 306 130 37 0 chr9 43490706 43490760 -80585412 - B4A SINE B4 -21 271 216 9 916 1132 79 24 0 chr9 43490875 43491039 -80585133 + B2_Mm1t SINE B2 4 171 -22 9 916 25 31 0 0 chr9 43492295 43492327 -80583845 + AT_rich Low_complexity Low_complexity 1 32 0 9 916 234 48 0 23 chr9 43492395 43492438 -80583734 + B2_Mm2 SINE B2 146 187 -8 9 916 615 159 0 0 chr9 43492465 43492578 -80583594 + GA-rich Low_complexity Low_complexity 3 115 0 9 916 602 335 40 33 chr9 43492707 43492979 -80583193 - MLT1F1 LTR MaLR -14 555 282 9 916 247 322 32 11 chr9 43492991 43493085 -80583087 - MLT1F1 LTR MaLR -378 191 96 9 916 307 146 0 0 chr9 43493085 43493133 -80583039 + B3A SINE B2 3 50 -148 9 916 6263 11 0 1 chr9 43493133 43493871 -80582301 - L1Md_T LINE L1 -203 5680 4944 9 916 7162 33 0 0 chr9 43493879 43494751 -80581421 + L1Md_T LINE L1 5711 6582 0 9 916 525 238 45 38 chr9 43494751 43494942 -80581230 + B3A SINE B2 18 207 -9 9 916 593 207 6 148 chr9 43495497 43495569 -80580603 + ID SINE ID 15 82 -142 9 916 1051 210 5 14 chr9 43495569 43495786 -80580386 + B3 SINE B2 2 216 0 9 916 593 207 6 148 chr9 43495786 43495889 -80580283 + ID_B1 SINE B4 83 165 -59 9 916 1143 124 0 0 chr9 43495974 43496143 -80580029 + B2_Mm2 SINE B2 1 169 -26 9 916 430 127 339 18 chr9 43496161 43496273 -80579899 + B2_Mm2 SINE B2 47 194 -1 9 916 279 173 0 0 chr9 43496322 43496374 -80579798 + (CTGGGG)n Simple_repeat Simple_repeat 2 53 0 9 916 619 258 37 48 chr9 43497359 43497546 -80578626 + RMER30 DNA MER1_type 14 198 -4 9 916 650 208 89 19 chr9 43497694 43497851 -80578321 + ID_B1 SINE B4 55 222 -2 9 916 916 236 104 0 chr9 43497886 43498145 -80578027 + B4A SINE B4 1 286 -6 9 916 1158 118 0 8 chr9 43498146 43498414 -80577758 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 9 916 2775 63 42 5 chr9 43498414 43498796 -80577376 + MTA_Mm LTR MaLR 1 396 0 9 916 477 191 0 22 chr9 43498796 43498884 -80577288 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 9 916 272 328 32 32 chr9 43499684 43499810 -80576362 + MIR3 SINE MIR 34 159 -49 9 916 381 269 35 44 chr9 43501411 43501524 -80574648 + MLT1A0 LTR MaLR 46 157 -208 1 916 680 276 0 41 chr9 43501526 43501696 -80574476 + RSINE1 SINE B4 3 165 0 2 916 255 324 0 0 chr9 43501696 43501770 -80574402 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 916 218 171 0 0 chr9 43501768 43501803 -80574369 + (CCA)n Simple_repeat Simple_repeat 1 35 0 4 916 601 326 35 22 chr9 43501812 43502044 -80574128 + MLT1A0 LTR MaLR 127 361 -13 1 916 200 255 21 0 chr9 43502060 43502107 -80574065 - MIRm SINE MIR -122 154 107 5 916 805 241 42 0 chr9 43502462 43502653 -80573519 - B3 SINE B2 -2 214 16 6 916 495 181 0 0 chr9 43502672 43502827 -80573345 + CT-rich Low_complexity Low_complexity 1 155 0 7 916 212 360 58 0 chr9 43502830 43502916 -80573256 + MIR3 SINE MIR 112 202 -6 8 916 354 297 0 19 chr9 43504464 43504567 -80571605 + B4A SINE B4 186 286 -6 9 916 232 220 34 0 chr9 43504575 43504634 -80571538 + (CATA)n Simple_repeat Simple_repeat 3 63 0 1 916 243 290 32 0 chr9 43505591 43505684 -80570488 + GA-rich Low_complexity Low_complexity 3 98 0 1 916 342 328 50 21 chr9 43505786 43505926 -80570246 - MLT1A1 LTR MaLR -264 144 1 1 916 393 308 61 30 chr9 43506257 43506421 -80569751 - L2b LINE L2 -10 3365 3197 1 916 184 191 64 0 chr9 43507635 43507682 -80568490 + MIRb SINE MIR 190 239 -29 1 916 247 250 0 0 chr9 43508002 43508058 -80568114 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 916 477 342 13 0 chr9 43508340 43508495 -80567677 + MIR3 SINE MIR 52 208 0 1 916 408 40 0 0 chr9 43508778 43508828 -80567344 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 916 610 341 142 63 chr9 43508871 43509469 -80566703 + MLT1E1A LTR MaLR 10 654 0 1 916 192 40 0 0 chr9 43510113 43510138 -80566034 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 916 202 286 0 0 chr9 43510828 43510877 -80565295 + MER5A DNA MER1_type 137 185 -4 2 916 630 251 233 0 chr9 43510956 43511171 -80565001 + B4A SINE B4 1 265 -27 2 916 1837 134 10 217 chr9 43511210 43511650 -80564522 + ORR1B1 LTR MaLR 1 339 -55 2 916 818 10 0 0 chr9 43511650 43511751 -80564421 + L1Md_A LINE L1 6482 6582 0 2 916 1837 134 10 217 chr9 43511751 43511807 -80564365 + ORR1B1 LTR MaLR 340 394 0 2 916 285 281 37 46 chr9 43511862 43511970 -80564202 + MIRc SINE MIR 70 176 -86 2 916 447 277 26 18 chr9 43512005 43512119 -80564053 - PB1D10 SINE Alu -1 116 2 2 916 1259 329 116 30 chr9 43512195 43512610 -80563562 + L1M5 LINE L1 4027 4491 -1655 2 916 1383 100 21 0 chr9 43512610 43512800 -80563372 + B2_Mm2 SINE B2 2 195 0 2 916 1259 307 96 42 chr9 43512800 43513863 -80562309 + L1M5 LINE L1 4492 5592 -587 2 916 410 273 10 0 chr9 43513888 43513987 -80562185 - PB1D9 SINE Alu -18 102 3 2 916 304 242 0 0 chr9 43514018 43514080 -80562092 - ID4 SINE ID -1 82 21 2 916 285 164 84 56 chr9 43514184 43514255 -80561917 - ID4 SINE ID -10 73 1 3 916 459 0 0 0 chr9 43514456 43514507 -80561665 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 916 581 363 27 58 chr9 43514511 43514841 -80561331 + ORR1E LTR MaLR 34 353 -6 3 916 213 350 82 27 chr9 43514968 43515115 -80561057 - L2 LINE L2 -456 2963 2809 3 916 181 385 22 11 chr9 43515180 43515272 -80560900 - L2 LINE L2 -605 2814 2722 3 114 687 229 14 0 chr9 43515834 43515974 -80560198 + B1_Mur2 SINE Alu 2 143 -6 3 917 588 268 120 22 chr9 43515996 43516221 -80559951 + B4A SINE B4 5 251 -41 3 917 420 146 18 18 chr9 43516194 43516302 -80559870 + B1_Mus2 SINE Alu 37 144 -5 3 917 231 36 0 0 chr9 43516322 43516350 -80559822 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 3 917 260 229 0 12 chr9 43516378 43516462 -80559710 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 917 283 344 0 16 chr9 43516478 43516605 -80559567 + (CATATA)n Simple_repeat Simple_repeat 1 125 0 3 917 323 252 0 8 chr9 43516634 43516762 -80559410 + (CA)n Simple_repeat Simple_repeat 2 128 0 4 917 415 147 0 14 chr9 43518888 43518957 -80557215 + PB1D7 SINE Alu 36 103 -17 4 917 217 302 0 45 chr9 43518989 43519055 -80557117 + MIR SINE MIR 90 152 -56 4 917 468 310 0 37 chr9 43520248 43520382 -80555790 - RSINE1 SINE B4 -34 131 3 4 917 207 0 0 0 chr9 43520415 43520438 -80555734 + (A)n Simple_repeat Simple_repeat 1 23 0 4 917 457 137 14 0 chr9 43520439 43520512 -80555660 + L1MA6 LINE L1 6221 6294 -6 4 917 594 276 141 36 chr9 43520572 43520764 -80555408 + B4 SINE B4 77 288 -4 4 917 205 261 0 0 chr9 43520768 43520814 -80555358 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 917 234 342 25 50 chr9 43520822 43520902 -80555270 - Cheshire DNA MER1_type -2340 80 3 4 917 369 0 0 0 chr9 43521138 43521179 -80554993 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 917 180 77 0 0 chr9 43521179 43521205 -80554967 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 917 183 205 0 0 chr9 43521495 43521534 -80554638 + C-rich Low_complexity Low_complexity 4 42 0 5 917 1134 50 0 28 chr9 43521923 43522067 -80554105 + B1_Mus1 SINE Alu 1 140 -8 5 917 411 21 0 0 chr9 43522541 43522589 -80553583 + (TGAG)n Simple_repeat Simple_repeat 3 50 0 5 917 298 286 63 8 chr9 43523282 43523409 -80552763 + MIRb SINE MIR 104 237 -31 5 917 584 296 116 13 chr9 43523507 43523682 -80552490 - L1MB3 LINE L1 -16 6167 5959 5 917 249 0 48 24 chr9 43523682 43523724 -80552448 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 917 1260 41 0 0 chr9 43523724 43523869 -80552303 - B1_Mus2 SINE Alu -2 145 1 5 917 584 296 116 13 chr9 43523869 43524010 -80552162 - L1MB3 LINE L1 -225 5958 5818 5 917 345 245 154 0 chr9 43524015 43524111 -80552061 + PB1D7 SINE Alu 7 119 -1 5 917 899 137 6 0 chr9 43524113 43524274 -80551898 + (TGGA)n Simple_repeat Simple_repeat 3 164 0 5 917 760 281 102 54 chr9 43524296 43524655 -80551517 - L1MB3 LINE L1 -352 5819 5445 5 917 731 281 153 55 chr9 43524901 43525353 -80550819 - LTR33A LTR ERVL -24 496 1 6 917 190 162 27 0 chr9 43526497 43526534 -80549638 - MER5A DNA MER1_type -64 125 88 6 917 278 165 198 32 chr9 43526617 43526711 -80549461 - B1F1 SINE Alu -49 100 2 6 917 188 293 52 0 chr9 43526711 43526769 -80549403 - MER5A DNA MER1_type -111 78 18 6 917 285 26 0 0 chr9 43527263 43527302 -80548870 + B1_Mm SINE Alu 108 146 -1 6 917 340 154 0 0 chr9 43527302 43527354 -80548818 + GA-rich Low_complexity Low_complexity 82 133 0 6 917 360 0 0 0 chr9 43527930 43527970 -80548202 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 917 202 362 11 0 chr9 43528042 43528136 -80548036 + (CATA)n Simple_repeat Simple_repeat 2 96 0 6 917 183 42 0 0 chr9 43528144 43528168 -80548004 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 917 208 211 14 14 chr9 43528668 43528740 -80547432 + CT-rich Low_complexity Low_complexity 2 73 0 6 917 185 286 0 114 chr9 43528757 43528836 -80547336 + MIRb SINE MIR 176 245 -23 6 917 180 320 0 74 chr9 43528919 43529000 -80547172 - MIR3 SINE MIR -25 183 109 7 917 195 42 0 0 chr9 43529179 43529203 -80546969 + (A)n Simple_repeat Simple_repeat 1 24 0 7 917 595 189 0 0 chr9 43529513 43529619 -80546553 - B1F SINE Alu -35 114 9 7 917 277 227 15 0 chr9 43529787 43529853 -80546319 - ID4_ SINE ID -9 74 8 7 917 35 24 0 0 chr9 43529923 43529965 -80546207 + AT_rich Low_complexity Low_complexity 1 42 0 7 917 200 34 0 33 chr9 43529965 43529995 -80546177 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 7 917 1570 33 0 6 chr9 43529995 43530177 -80545995 + B2_Mm2 SINE B2 1 181 -14 7 917 207 0 0 0 chr9 43530177 43530200 -80545972 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 917 1185 64 0 0 chr9 43530202 43530343 -80545829 - B1_Mm SINE Alu -6 141 1 7 917 514 159 0 18 chr9 43530363 43530472 -80545700 + GA-rich Low_complexity Low_complexity 3 109 0 7 917 293 0 27 0 chr9 43530472 43530509 -80545663 + (CAA)n Simple_repeat Simple_repeat 2 39 0 8 917 229 284 30 0 chr9 43531003 43531070 -80545102 - MIRc SINE MIR -112 156 88 8 917 241 204 0 0 chr9 43531145 43531199 -80544973 - Lx8 LINE L1 -4 7469 7416 8 917 743 222 13 13 chr9 43531274 43531429 -80544743 - RSINE1 SINE B4 -6 159 5 8 917 391 313 12 48 chr9 43532864 43533056 -80543116 + MLT1D LTR MaLR 381 679 -1 8 917 206 286 32 0 chr9 43533057 43533120 -80543052 + MIRb SINE MIR 203 267 -1 8 917 1458 75 16 0 chr9 43534123 43534310 -80541862 - B2_Mm2 SINE B2 -5 190 1 8 917 751 204 14 7 chr9 43534322 43534470 -80541702 - B1_Mur2 SINE Alu 0 149 1 8 917 1016 240 17 21 chr9 43534472 43534706 -80541466 + MTEa LTR MaLR 29 261 -118 8 917 2543 258 114 21 chr9 43534709 43535422 -80540750 + MTEa-int LTR MaLR 799 1577 -3 8 917 1588 219 89 31 chr9 43535425 43535783 -80540389 + MTEa LTR MaLR 1 379 0 8 917 533 366 43 0 chr9 43536144 43536330 -80539842 - MER91A DNA Tip100 0 196 3 9 917 246 377 14 55 chr9 43536375 43536521 -80539651 - MIRc SINE MIR -118 150 11 9 917 587 234 94 0 chr9 43536879 43537007 -80539165 + B1F SINE Alu 1 140 -9 9 917 225 217 16 32 chr9 43537103 43537165 -80539007 + tRNA-Ala-GCG tRNA tRNA 3 63 -12 9 917 264 214 17 35 chr9 43537383 43537499 -80538673 + (TA)n Simple_repeat Simple_repeat 2 115 0 9 917 187 321 0 0 chr9 43537550 43537603 -80538569 + MIR SINE MIR 70 122 -86 9 917 191 170 0 21 chr9 43538483 43538531 -80537641 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 917 813 53 52 17 chr9 43540608 43540781 -80535391 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 917 44 63 0 0 chr9 43543367 43543446 -80532726 + AT_rich Low_complexity Low_complexity 1 79 0 9 917 1204 62 0 0 chr9 43543972 43544116 -80532056 - B1_Mus2 SINE Alu 0 147 4 9 917 195 42 0 0 chr9 43544433 43544457 -80531715 + (T)n Simple_repeat Simple_repeat 1 24 0 1 917 1107 76 7 20 chr9 43544457 43544605 -80531567 - B1_Mus2 SINE Alu 0 147 2 1 917 906 231 52 0 chr9 43544645 43544857 -80531315 + ID_B1 SINE B4 1 223 -1 1 917 266 0 0 29 chr9 43546521 43546556 -80529616 + (CCCCCA)n Simple_repeat Simple_repeat 4 37 0 1 917 215 288 1 14 chr9 43547182 43547274 -80528898 - MIR SINE MIR -100 162 78 1 917 484 313 18 118 chr9 43547709 43547929 -80528243 + L1MD3 LINE L1 7729 7926 -69 1 917 828 255 26 5 chr9 43547929 43548118 -80528054 - B3A SINE B2 -3 195 3 1 917 484 313 18 118 chr9 43548118 43548176 -80527996 + L1MD3 LINE L1 7927 7979 -16 1 917 233 333 122 9 chr9 43548311 43548426 -80527746 - MIRb SINE MIR -32 236 109 1 917 394 281 171 35 chr9 43548621 43548791 -80527381 + B3A SINE B2 2 194 -4 1 917 465 257 96 0 chr9 43548807 43548943 -80527229 + B1F2 SINE Alu 1 149 0 1 917 642 220 7 21 chr9 43548948 43549092 -80527080 + B1_Mur2 SINE Alu 7 148 -1 1 917 185 65 32 0 chr9 43549137 43549168 -80527004 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 917 402 190 26 89 chr9 43549186 43549308 -80526864 + B1_Mur4 SINE Alu 1 149 -1 1 917 440 125 10 30 chr9 43549319 43549418 -80526754 + GA-rich Low_complexity Low_complexity 2 98 0 1 917 185 275 48 48 chr9 43549575 43549659 -80526513 + L3 LINE CR1 2766 2849 -1640 1 917 183 26 0 93 chr9 43549659 43549702 -80526470 + (TTGG)n Simple_repeat Simple_repeat 4 42 0 1 917 628 90 295 9 chr9 43549702 43549814 -80526358 - B1_Mus2 SINE Alu -2 145 2 1 917 493 167 31 0 chr9 43550012 43550108 -80526064 - B1_Mus1 SINE Alu -16 132 34 1 917 265 275 12 36 chr9 43551590 43551673 -80524499 + MIR3 SINE MIR 109 189 -19 1 917 23 68 0 0 chr9 43551929 43551973 -80524199 + GC_rich Low_complexity Low_complexity 1 44 0 1 917 206 160 20 0 chr9 43554683 43554733 -80521439 + G-rich Low_complexity Low_complexity 2 52 0 1 917 234 150 0 0 chr9 43556332 43556372 -80519800 + (T)n Simple_repeat Simple_repeat 1 40 0 1 917 290 349 80 35 chr9 43557798 43557997 -80518175 + MIRb SINE MIR 48 255 -13 1 917 198 154 21 10 chr9 43558680 43558728 -80517444 - MIR SINE MIR -103 165 120 1 917 325 313 136 0 chr9 43561050 43561224 -80514948 - MIRb SINE MIR -72 196 3 1 917 1260 35 0 0 chr9 43561420 43561564 -80514608 + B1_Mus2 SINE Alu 2 145 -2 1 917 254 313 70 51 chr9 43564514 43564672 -80511500 - L3 LINE CR1 -4 4485 4325 1 917 307 303 0 43 chr9 43567716 43567809 -80508363 - MER20 DNA MER1_type -52 167 79 1 917 531 244 0 48 chr9 43567844 43567969 -80508203 + PB1D9 SINE Alu 1 119 -1 1 917 189 319 81 40 chr9 43568662 43568786 -80507386 + L2b LINE L2 3015 3143 -232 1 917 261 354 0 0 chr9 43569036 43569132 -80507040 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 917 523 266 75 6 chr9 43570601 43570760 -80505412 - L1MB7 LINE L1 -17 6167 5998 1 917 443 204 29 19 chr9 43570999 43571104 -80505068 - ID_B1 SINE B4 0 224 119 1 917 387 0 0 0 chr9 43571233 43571276 -80504896 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 917 965 274 81 72 chr9 43571991 43572337 -80503835 - MTEa LTR MaLR -28 351 3 1 917 682 222 38 108 chr9 43572466 43572678 -80503494 + B3A SINE B2 2 198 0 1 917 365 235 72 81 chr9 43572809 43572920 -80503252 + PB1D10 SINE Alu 8 117 0 1 917 314 252 126 30 chr9 43573916 43574051 -80502121 + L2c LINE L2 2742 2889 -530 1 917 185 182 44 29 chr9 43574103 43574171 -80502001 + L2c LINE L2 3018 3086 -301 1 917 795 178 6 11 chr9 43576113 43576289 -80499883 + CT-rich Low_complexity Low_complexity 1 175 0 1 917 362 269 11 11 chr9 43576316 43576410 -80499762 - PB1D10 SINE Alu -17 100 7 1 917 233 261 0 30 chr9 43576354 43576421 -80499751 - B4A SINE B4 -146 146 82 1 917 215 397 26 0 chr9 43576737 43576853 -80499319 + L3b LINE CR1 216 334 -148 1 917 205 237 0 0 chr9 43577271 43577309 -80498863 + (CCG)n Simple_repeat Simple_repeat 2 39 0 1 917 454 216 10 40 chr9 43577848 43577949 -80498223 + PB1D7 SINE Alu 10 107 -13 1 917 323 233 216 14 chr9 43578921 43579069 -80497103 + MIRb SINE MIR 19 196 -72 1 917 253 247 111 20 chr9 43580684 43580783 -80495389 + MIR SINE MIR 43 150 -58 1 917 213 39 0 0 chr9 43581130 43581156 -80495016 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 917 237 33 0 0 chr9 43581308 43581338 -80494834 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 1 917 185 0 40 0 chr9 43581638 43581663 -80494509 + (CCTG)n Simple_repeat Simple_repeat 4 29 0 1 917 222 310 121 9 chr9 43582954 43583109 -80493063 + MIR SINE MIR 11 185 -77 1 917 801 264 9 33 chr9 43583317 43583532 -80492640 - B3 SINE B2 0 216 7 1 917 319 147 37 85 chr9 43583553 43583635 -80492537 - PB1D10 SINE Alu 0 117 40 1 917 492 32 0 0 chr9 43584928 43584990 -80491182 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 917 263 336 85 28 chr9 43585482 43585623 -80490549 + MIR SINE MIR 82 230 -32 1 917 262 312 0 50 chr9 43586801 43586902 -80489270 + PB1 SINE Alu 3 98 -29 1 917 502 342 48 0 chr9 43588388 43588575 -80487597 + MER20 DNA MER1_type 4 199 -20 1 917 310 350 72 17 chr9 43588643 43588823 -80487349 - MIR SINE MIR -3 259 70 1 917 490 209 0 0 chr9 43590202 43590288 -80485884 + PB1D7 SINE Alu 5 90 -30 1 917 285 265 27 109 chr9 43590288 43590312 -80485860 + B4 SINE B4 90 190 -102 1 917 297 188 14 68 chr9 43592364 43592438 -80483734 + ID SINE ID 5 74 -150 1 917 312 27 0 0 chr9 43592442 43592479 -80483693 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 917 540 0 0 0 chr9 43592479 43592538 -80483634 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 917 474 250 0 35 chr9 43592635 43592751 -80483421 + B1F SINE Alu 38 149 0 1 917 1630 16 0 26 chr9 43593818 43594011 -80482161 - B2_Mm1a SINE B2 -4 189 2 1 917 192 233 0 0 chr9 43594409 43594482 -80481690 + (ATG)n Simple_repeat Simple_repeat 1 73 0 1 917 389 300 17 96 chr9 43594487 43594664 -80481508 - MIR SINE MIR -6 256 94 1 917 258 105 0 0 chr9 43594836 43594874 -80481298 + (A)n Simple_repeat Simple_repeat 1 38 0 1 917 261 222 0 0 chr9 43595343 43595406 -80480766 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 917 390 291 19 10 chr9 43596305 43596409 -80479763 + polypyrimidine Low_complexity Low_complexity 2 106 0 1 917 382 314 5 20 chr9 43596417 43596436 -80479736 - ID_B1 SINE B4 -88 204 118 1 917 452 247 0 10 chr9 43596436 43596534 -80479638 - PB1D10 SINE Alu -20 97 1 1 917 187 292 110 55 chr9 43597076 43597239 -80478933 - L2b LINE L2 -23 3352 3181 1 917 184 355 43 11 chr9 43597367 43597461 -80478711 - MIRc SINE MIR -63 205 109 1 917 363 256 11 11 chr9 43597518 43597609 -80478563 + PB1D10 SINE Alu 1 91 -26 1 917 249 280 0 13 chr9 43597650 43597726 -80478446 + ID4 SINE ID 6 80 -3 1 917 362 344 18 35 chr9 43597788 43597926 -80478246 - L1MEe LINE L1 -4022 832 697 1 917 205 51 25 25 chr9 43597926 43597966 -80478206 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 917 362 344 18 35 chr9 43597966 43597996 -80478176 - L1MEe LINE L1 -4158 696 667 1 917 573 268 126 5 chr9 43598007 43598213 -80477959 + B4A SINE B4 2 232 -60 1 917 573 282 0 8 chr9 43598217 43598349 -80477823 + B1_Mur2 SINE Alu 18 148 -1 1 917 284 296 0 54 chr9 43598476 43598569 -80477603 + PB1D10 SINE Alu 1 88 -29 1 917 22 35 0 0 chr9 43598621 43598650 -80477522 + AT_rich Low_complexity Low_complexity 1 29 0 1 917 513 268 112 7 chr9 43598650 43598793 -80477379 - RSINE1 SINE B4 -6 159 2 1 917 555 248 21 35 chr9 43598851 43598993 -80477179 - B1F SINE Alu -7 142 3 1 917 216 342 74 79 chr9 43601716 43601843 -80474329 + MIRc SINE MIR 67 196 -72 1 917 397 289 9 17 chr9 43601843 43601959 -80474213 + PB1D10 SINE Alu 3 117 0 1 917 216 342 74 79 chr9 43601959 43602034 -80474138 + MIRc SINE MIR 197 268 0 1 917 369 0 0 0 chr9 43604716 43604757 -80471415 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 917 252 337 23 0 chr9 43606523 43606609 -80469563 - L2a LINE L2 -53 3373 3286 1 917 236 333 0 0 chr9 43606646 43606721 -80469451 - L2a LINE L2 -246 3180 3106 1 917 728 328 57 12 chr9 43606764 43607097 -80469075 - L2a LINE L2 -457 2962 2615 1 917 438 167 111 0 chr9 43607595 43607685 -80468487 + PB1 SINE Alu 23 122 -5 1 917 223 314 71 0 chr9 43607698 43607768 -80468404 + ID4_ SINE ID 3 77 -6 1 917 751 160 0 8 chr9 43607875 43607995 -80468177 + B1_Mur2 SINE Alu 17 135 -14 1 917 340 361 67 87 chr9 43608025 43608337 -80467835 - ORR1E LTR MaLR -53 306 1 1 917 370 260 135 0 chr9 43609464 43609568 -80466604 + PB1D10 SINE Alu 2 119 -1 1 917 465 288 17 0 chr9 43610531 43610649 -80465523 - PB1D7 SINE Alu 0 120 1 1 917 191 88 0 29 chr9 43611856 43611891 -80464281 + (GGA)n Simple_repeat Simple_repeat 2 35 0 1 917 219 103 0 0 chr9 43612247 43612286 -80463886 + (T)n Simple_repeat Simple_repeat 1 39 0 1 917 555 16 0 0 chr9 43616126 43616190 -80459982 + (TCC)n Simple_repeat Simple_repeat 2 65 0 1 917 553 217 0 0 chr9 43617829 43617935 -80458237 + B1_Mus1 SINE Alu 2 107 -41 1 917 495 0 0 0 chr9 43617943 43617998 -80458174 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 917 1382 239 52 78 chr9 43618525 43618910 -80457262 - MTE2b LTR MaLR -4 375 1 1 917 332 210 37 12 chr9 43619120 43619202 -80456970 + PB1D10 SINE Alu 17 100 -17 1 917 375 23 0 0 chr9 43619205 43619249 -80456923 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 917 315 0 0 0 chr9 43619790 43619825 -80456347 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 917 1624 219 44 11 chr9 43619903 43620268 -80455904 - MTD LTR MaLR 0 419 43 2 917 249 89 35 18 chr9 43620251 43620308 -80455864 - B2_Mm2 SINE B2 -1 194 137 2 917 1207 90 0 0 chr9 43620386 43620553 -80455619 - B2_Mm2 SINE B2 -26 169 3 2 917 562 99 0 0 chr9 43620553 43620634 -80455538 - MTD LTR MaLR -338 81 1 2 917 228 299 131 0 chr9 43620711 43620818 -80455354 + L2b LINE L2 3235 3355 -20 2 917 682 12 0 0 chr9 43620942 43621025 -80455147 + L1Md_T LINE L1 6498 6580 -2 2 917 1416 58 40 0 chr9 43621025 43621199 -80454973 - B2_Mm2 SINE B2 -14 181 1 2 917 600 194 181 0 chr9 43621562 43621706 -80454466 + L1MC1 LINE L1 6150 6319 -14 2 917 308 325 12 24 chr9 43621969 43622133 -80454039 + GA-rich Low_complexity Low_complexity 3 164 0 2 917 284 333 0 33 chr9 43622059 43622180 -80453992 + (TGGG)n Simple_repeat Simple_repeat 3 119 0 2 917 917 290 81 39 chr9 43622192 43622626 -80453546 - RLTR12B LTR ERVK -29 499 48 2 917 244 200 19 29 chr9 43622679 43622782 -80453390 + (TGGA)n Simple_repeat Simple_repeat 4 105 0 2 917 334 237 13 13 chr9 43623565 43623642 -80452530 + ID4 SINE ID 5 81 -2 2 917 503 53 13 0 chr9 43623917 43623992 -80452180 + (TTA)n Simple_repeat Simple_repeat 3 78 0 2 917 369 0 0 0 chr9 43624008 43624049 -80452123 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 917 339 296 48 38 chr9 43624251 43624424 -80451748 - L1M5 LINE L1 -675 5567 5386 2 917 248 255 0 0 chr9 43625268 43625319 -80450853 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 917 763 350 28 4 chr9 43625827 43626082 -80450090 - MER2 DNA MER2_type 0 345 85 2 917 510 305 46 0 chr9 43626624 43626755 -80449417 - RSINE1 SINE B4 -27 138 2 2 917 230 243 157 0 chr9 43626789 43626859 -80449313 - MIR3 SINE MIR -14 194 114 2 917 243 252 114 96 chr9 43626979 43627146 -80449026 - MIR SINE MIR -80 182 13 2 917 764 246 21 58 chr9 43627219 43627409 -80448763 + ID_B1 SINE B4 20 202 -22 2 917 666 183 17 0 chr9 43627575 43627695 -80448477 + B1F SINE Alu 12 133 -16 2 917 372 174 0 0 chr9 43627706 43627798 -80448374 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 917 304 258 45 0 chr9 43628245 43628334 -80447838 - MIRc SINE MIR -170 98 6 2 917 271 256 103 11 chr9 43628520 43628565 -80447607 + B1F SINE Alu 3 56 -93 2 917 216 0 0 0 chr9 43628565 43628589 -80447583 + (TGG)n Simple_repeat Simple_repeat 1 24 0 2 917 271 256 103 11 chr9 43628589 43628630 -80447542 + B1F SINE Alu 57 97 -52 2 917 264 167 0 0 chr9 43628630 43628678 -80447494 + GA-rich Low_complexity Low_complexity 3 50 0 2 917 423 0 0 0 chr9 43628679 43628726 -80447446 + (GAA)n Simple_repeat Simple_repeat 3 49 0 2 917 966 131 23 0 chr9 43628745 43628921 -80447251 + GA-rich Low_complexity Low_complexity 1 180 0 2 917 289 284 10 59 chr9 43629210 43629311 -80446861 + RSINE1 SINE B4 60 155 -10 2 917 261 161 71 0 chr9 43629401 43629457 -80446715 - ID SINE ID -162 62 3 2 917 214 243 65 39 chr9 43629612 43629689 -80446483 - MIRc SINE MIR -167 101 23 2 917 3628 166 73 6 chr9 43629877 43629989 -80446183 - RMER1A Other Other 0 1030 903 2 917 261 0 0 0 chr9 43629989 43630018 -80446154 + (CTA)n Simple_repeat Simple_repeat 1 29 0 2 917 3628 182 70 14 chr9 43630018 43630672 -80445500 - RMER1A Other Other -128 902 100 2 917 312 27 0 0 chr9 43631305 43631342 -80444830 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 917 282 239 95 60 chr9 43631742 43631858 -80444314 + MIRc SINE MIR 24 143 -125 2 917 363 280 152 0 chr9 43631984 43632102 -80444070 + ID_B1 SINE B4 81 216 -8 2 917 240 228 53 0 chr9 43632052 43632109 -80444063 + B1_Mur1 SINE Alu 89 148 -1 2 917 218 207 17 0 chr9 43632111 43632169 -80444003 + GA-rich Low_complexity Low_complexity 3 61 0 2 917 251 250 50 0 chr9 43632336 43632396 -80443776 - MIR SINE MIR 0 262 200 2 917 416 152 12 71 chr9 43633248 43633333 -80442839 + PB1D10 SINE Alu 38 117 0 2 917 323 267 0 0 chr9 43634469 43634544 -80441628 + ID_B1 SINE B4 131 205 -19 2 917 261 312 78 54 chr9 43635073 43635239 -80440933 + MIRb SINE MIR 73 242 -26 2 917 285 221 72 14 chr9 43636210 43636279 -80439893 + ID_B1 SINE B4 152 224 0 2 917 681 47 0 0 chr9 43637942 43638027 -80438145 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 917 815 165 172 21 chr9 43638388 43638411 -80437761 - URR1A DNA MER1_type 0 226 204 2 917 417 130 26 0 chr9 43638411 43638488 -80437684 - L1Md_F2 LINE L1 0 6582 6504 2 917 815 165 172 21 chr9 43638488 43638656 -80437516 - URR1A DNA MER1_type -23 203 6 2 917 299 284 0 47 chr9 43638796 43638881 -80437291 - PB1 SINE Alu -5 122 42 2 917 963 189 35 51 chr9 43638887 43639144 -80437028 + MER96B DNA hAT 94 346 -71 2 917 423 252 146 0 chr9 43639793 43639916 -80436256 + ID_B1 SINE B4 6 146 -78 2 917 718 149 0 0 chr9 43639919 43640026 -80436146 + PB1D9 SINE Alu 1 107 -13 2 917 1101 99 0 0 chr9 43640065 43640226 -80435946 + (GA)n Simple_repeat Simple_repeat 2 162 0 2 917 880 204 135 20 chr9 43640676 43640876 -80435296 + ID_B1 SINE B4 2 224 0 2 917 465 19 0 0 chr9 43641034 43641088 -80435084 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 917 364 155 36 0 chr9 43641102 43641186 -80434986 + GA-rich Low_complexity Low_complexity 4 90 0 2 917 338 261 68 113 chr9 43641885 43642062 -80434110 - MIRb SINE MIR -23 245 77 2 917 876 152 265 17 chr9 43642819 43643000 -80433172 - URR1A DNA MER1_type 0 226 1 2 917 336 234 212 18 chr9 43644307 43644420 -80431752 - ID_B1 SINE B4 0 224 90 2 917 786 231 6 13 chr9 43644945 43645103 -80431069 + RSINE1 SINE B4 3 159 -6 2 917 357 82 0 0 chr9 43645105 43645154 -80431018 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 917 432 0 0 0 chr9 43645303 43645351 -80430821 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 917 352 274 42 8 chr9 43645363 43645481 -80430691 - MLT1A0 LTR MaLR -73 292 171 2 917 542 216 61 111 chr9 43645886 43645912 -80430260 - MTEb LTR MaLR -8 371 357 2 917 1198 56 0 0 chr9 43645912 43646054 -80430118 + B1_Mm SINE Alu 3 144 -3 2 917 198 0 0 0 chr9 43646054 43646076 -80430096 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 917 559 216 61 111 chr9 43646076 43646246 -80429926 - MTEb LTR MaLR -23 356 184 2 917 883 146 14 27 chr9 43646284 43646432 -80429740 + B1_Mus1 SINE Alu 1 146 -2 2 917 328 303 0 0 chr9 43646436 43646512 -80429660 - MTEb LTR MaLR -283 76 1 2 917 215 345 61 43 chr9 43646593 43646708 -80429464 + ID_B1 SINE B4 53 169 -55 2 917 266 258 96 11 chr9 43646637 43646731 -80429441 + PB1D7 SINE Alu 19 120 0 2 918 320 282 24 0 chr9 43647421 43647506 -80428666 - ID_B1 SINE B4 -7 217 131 2 918 324 258 120 8 chr9 43647559 43647684 -80428488 - RSINE1 SINE B4 -20 145 7 2 918 261 0 0 0 chr9 43647686 43647715 -80428457 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 2 918 323 306 18 36 chr9 43647733 43647845 -80428327 - B1_Mur1 SINE Alu -1 148 39 2 918 240 290 128 20 chr9 43649075 43649177 -80426995 - MIR SINE MIR -110 152 40 2 918 1411 131 4 71 chr9 43649337 43649575 -80426597 - URR1A DNA MER1_type 0 226 5 2 918 198 118 0 0 chr9 43651741 43651775 -80424397 + (C)n Simple_repeat Simple_repeat 1 34 0 2 918 204 287 0 33 chr9 43651925 43652015 -80424157 + C-rich Low_complexity Low_complexity 2 88 0 2 918 309 341 56 28 chr9 43652279 43652457 -80423715 + MIRb SINE MIR 80 262 -6 2 918 414 0 0 0 chr9 43654930 43654976 -80421196 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 918 555 29 0 0 chr9 43655908 43655977 -80420195 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 918 501 17 0 0 chr9 43656291 43656349 -80419823 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 918 276 219 66 14 chr9 43656349 43656437 -80419735 - B1F SINE Alu -2 147 27 2 918 258 56 0 0 chr9 43656773 43656809 -80419363 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 918 270 0 0 0 chr9 43656809 43656838 -80419334 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 918 269 312 18 9 chr9 43656851 43656961 -80419211 - MLT1L LTR MaLR -166 444 334 2 918 279 173 0 0 chr9 43657054 43657106 -80419066 + (CAG)n Simple_repeat Simple_repeat 3 54 0 2 918 252 261 28 42 chr9 43657346 43657366 -80418806 + B4 SINE B4 68 86 -206 2 918 370 310 39 84 chr9 43657366 43657457 -80418715 + B1F SINE Alu 1 89 -60 2 918 418 170 463 0 chr9 43657457 43657604 -80418568 + B3 SINE B2 2 216 0 2 918 370 310 39 84 chr9 43657604 43657667 -80418505 + B1F SINE Alu 90 148 -1 2 918 557 213 0 73 chr9 43657695 43657832 -80418340 + ID_B1 SINE B4 98 224 0 2 918 332 230 18 201 chr9 43658642 43658811 -80417361 + B1F1 SINE Alu 12 149 0 2 918 393 22 0 0 chr9 43658832 43658878 -80417294 + (A)n Simple_repeat Simple_repeat 1 46 0 2 918 407 257 9 54 chr9 43658887 43658998 -80417174 + PB1D10 SINE Alu 3 108 -9 2 918 425 295 75 15 chr9 43659113 43659247 -80416925 + ID_B1 SINE B4 83 224 0 2 918 239 323 139 27 chr9 43659343 43659601 -80416571 - L2 LINE L2 -952 2467 2181 2 918 478 157 45 18 chr9 43659700 43659810 -80416362 + MER57A-int LTR ERV1 5804 5916 -271 2 918 319 278 19 93 chr9 43660580 43660687 -80415485 + PB1D10 SINE Alu 3 101 -16 2 918 450 0 0 0 chr9 43660689 43660739 -80415433 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 918 350 289 11 0 chr9 43660743 43660833 -80415339 + BC1_Mm scRNA scRNA 2 92 -60 2 918 191 186 0 63 chr9 43660847 43660910 -80415262 + G-rich Low_complexity Low_complexity 2 60 0 2 918 243 235 101 64 chr9 43661251 43661274 -80414898 - MT2B2 LTR ERVL -255 329 303 3 918 592 234 8 8 chr9 43661274 43661399 -80414773 + RSINE1 SINE B4 1 125 -40 3 918 219 36 0 0 chr9 43661399 43661427 -80414745 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 918 315 0 0 0 chr9 43661443 43661478 -80414694 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 918 813 120 0 31 chr9 43661479 43661608 -80414564 - B1_Mus2 SINE Alu -12 135 11 3 918 1714 113 219 0 chr9 43661677 43661942 -80414230 + ORR1A2 LTR MaLR 5 327 0 3 918 877 228 43 34 chr9 43662171 43662380 -80413792 - ID_B1 SINE B4 -9 215 5 3 918 192 250 235 25 chr9 43662380 43662499 -80413673 - MIRm SINE MIR -129 147 4 3 918 208 321 25 82 chr9 43662528 43662650 -80413522 + MIR SINE MIR 98 212 -50 3 918 33 0 0 0 chr9 43662990 43663023 -80413149 + AT_rich Low_complexity Low_complexity 1 33 0 3 918 440 113 0 9 chr9 43663068 43663152 -80413020 - B1F SINE Alu -23 126 46 3 918 198 0 0 0 chr9 43663283 43663305 -80412867 + (A)n Simple_repeat Simple_repeat 1 22 0 3 918 393 236 45 0 chr9 43663470 43663586 -80412586 + B1F SINE Alu 1 127 0 3 918 362 115 16 0 chr9 43663595 43663656 -80412516 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 3 918 216 0 0 0 chr9 43663799 43663823 -80412349 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 918 405 0 0 0 chr9 43664018 43664063 -80412109 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 918 1182 121 66 0 chr9 43664607 43664789 -80411383 + B2_Mm2 SINE B2 2 195 0 3 918 329 277 73 72 chr9 43665397 43665636 -80410536 + MLT1C LTR MaLR 66 275 -192 3 918 822 21 0 0 chr9 43665636 43665732 -80410440 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 918 465 299 40 34 chr9 43665736 43665885 -80410287 - RSINE1 SINE B4 -13 152 3 3 918 329 202 35 174 chr9 43665885 43665947 -80410225 + MLT1C LTR MaLR 272 322 -145 3 918 402 231 13 0 chr9 43665998 43666095 -80410077 - PB1D10 SINE Alu -43 106 3 3 918 327 296 19 78 chr9 43666425 43666579 -80409593 - RMER5 LTR ERV1 -250 284 140 3 918 356 270 45 0 chr9 43666823 43666934 -80409238 - PB1D10 SINE Alu -1 116 1 3 918 288 264 116 14 chr9 43666934 43666969 -80409203 - B4A SINE B4 -1 223 50 3 918 293 143 0 39 chr9 43667365 43667416 -80408756 - RSINE1 SINE B4 -34 131 83 3 918 583 234 3 8 chr9 43667476 43667602 -80408570 + B1_Mur3 SINE Alu 17 140 -9 3 918 323 250 0 36 chr9 43667528 43667611 -80408561 + ID_B1 SINE B4 145 224 0 3 918 347 228 28 132 chr9 43667668 43667774 -80408398 - PB1D7 SINE Alu -10 110 16 3 918 189 0 0 0 chr9 43667814 43667835 -80408337 + (A)n Simple_repeat Simple_repeat 1 21 0 3 918 520 291 33 26 chr9 43667835 43667987 -80408185 + RSINE1 SINE B4 3 155 -10 3 918 465 269 18 18 chr9 43668142 43668252 -80407920 - PB1D10 SINE Alu -2 115 6 3 918 245 283 19 140 chr9 43668421 43668635 -80407537 + MT2B LTR ERVL 82 269 -332 3 918 555 169 0 0 chr9 43668567 43668656 -80407516 + B1F2 SINE Alu 48 136 -13 3 918 188 88 0 56 chr9 43668656 43668692 -80407480 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 3 918 480 35 0 0 chr9 43668909 43668967 -80407205 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 918 709 254 103 30 chr9 43669007 43669210 -80406962 + ID_B1 SINE B4 2 219 -5 3 918 219 180 100 0 chr9 43669718 43669768 -80406404 + MIRb SINE MIR 188 242 -26 3 918 2104 122 6 48 chr9 43670041 43670377 -80405795 - RLTRETN_Mm LTR ERVK 0 322 1 3 918 564 209 239 6 chr9 43670906 43671065 -80405107 - B3A SINE B2 -2 196 1 3 918 21 0 0 0 chr9 43671191 43671212 -80404960 + AT_rich Low_complexity Low_complexity 1 21 0 3 918 234 336 7 118 chr9 43671240 43671269 -80404903 + MT2B LTR ERVL 144 188 -413 3 918 253 283 0 0 chr9 43671269 43671329 -80404843 + B4A SINE B4 91 150 -142 3 918 532 230 0 17 chr9 43671280 43671395 -80404777 + B1_Mur4 SINE Alu 18 130 -20 3 918 234 336 7 118 chr9 43671329 43671375 -80404797 + MT2B LTR ERVL 189 263 -338 3 918 233 211 0 73 chr9 43671460 43671542 -80404630 + G-rich Low_complexity Low_complexity 3 78 0 3 918 358 278 237 20 chr9 43672664 43672917 -80403255 + MER92B LTR ERV1 156 463 -173 3 918 399 127 0 0 chr9 43672917 43672980 -80403192 + (CTG)n Simple_repeat Simple_repeat 1 63 0 3 918 686 238 156 57 chr9 43673530 43673793 -80402379 + B4A SINE B4 4 292 0 3 918 516 129 14 230 chr9 43674165 43674317 -80401855 + B1_Mur1 SINE Alu 29 147 0 3 918 469 239 44 15 chr9 43674481 43674617 -80401555 + B1F SINE Alu 2 141 -8 3 918 299 210 0 88 chr9 43674633 43674701 -80401471 + ID4 SINE ID 2 63 -20 3 918 1197 68 0 0 chr9 43674841 43674988 -80401184 - B1_Mus1 SINE Alu 0 148 2 3 918 306 0 0 0 chr9 43675795 43675829 -80400343 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 918 231 36 0 0 chr9 43675829 43675856 -80400316 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 918 788 278 75 0 chr9 43675942 43676115 -80400057 + ID_B1 SINE B4 11 196 -28 3 918 341 292 155 26 chr9 43676017 43676133 -80400039 + B1F1 SINE Alu 7 137 -12 3 918 540 168 0 0 chr9 43676133 43676234 -80399938 + CT-rich Low_complexity Low_complexity 2 102 0 3 918 206 83 56 0 chr9 43676249 43676285 -80399887 + (CATA)n Simple_repeat Simple_repeat 3 40 0 3 918 321 26 0 0 chr9 43676495 43676533 -80399639 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 3 918 1147 52 0 0 chr9 43676533 43676669 -80399503 - B1_Mus2 SINE Alu -9 138 3 3 918 666 261 76 5 chr9 43676677 43676862 -80399310 - B3A SINE B2 0 198 1 3 918 829 171 6 6 chr9 43676893 43677069 -80399103 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 918 673 226 0 11 chr9 43677025 43677204 -80398968 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 3 918 301 236 0 0 chr9 43677205 43677260 -80398912 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 918 369 0 0 0 chr9 43677625 43677666 -80398506 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 918 787 206 7 0 chr9 43677666 43677802 -80398370 - B1_Mur2 SINE Alu -11 138 2 3 918 683 248 7 27 chr9 43677839 43677988 -80398184 + RSINE1 SINE B4 4 149 -16 3 918 296 268 72 7 chr9 43678742 43678881 -80397291 - HAL1 LINE L1 -130 2377 2230 3 918 333 68 0 0 chr9 43678887 43678931 -80397241 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 918 245 270 52 35 chr9 43679015 43679130 -80397042 - HAL1 LINE L1 -1007 1500 1384 3 918 601 210 116 97 chr9 43679165 43679381 -80396791 - ID_B1 SINE B4 -3 221 2 3 918 572 237 120 13 chr9 43679421 43679720 -80396452 - HAL1 LINE L1 -1292 1215 885 3 918 414 291 0 0 chr9 43679792 43679895 -80396277 + PB1D10 SINE Alu 2 104 -13 3 918 525 306 18 71 chr9 43679917 43680086 -80396086 + RSINE1 SINE B4 2 161 -4 3 918 387 125 0 0 chr9 43680412 43680468 -80395704 - ORR1B1 LTR MaLR 0 367 312 3 918 1300 97 16 5 chr9 43680464 43680651 -80395521 - B2_Mm2 SINE B2 -5 190 2 3 918 1961 132 63 27 chr9 43680665 43680999 -80395173 - ORR1B1 LTR MaLR -48 346 1 3 918 330 45 0 0 chr9 43681379 43681423 -80394749 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 918 771 32 0 0 chr9 43681456 43681550 -80394622 - B1_Mm SINE Alu 0 147 54 3 918 231 297 55 125 chr9 43681483 43681683 -80394489 - MT2B2 LTR ERVL -308 276 91 3 918 196 195 49 0 chr9 43681803 43681844 -80394328 + L2c LINE L2 3261 3303 -84 3 918 432 0 0 0 chr9 43681844 43681892 -80394280 + (TTA)n Simple_repeat Simple_repeat 2 49 0 3 918 332 292 37 9 chr9 43682008 43682115 -80394057 - MIRm SINE MIR -6 270 161 3 918 790 348 68 83 chr9 43682424 43682894 -80393278 + MER21B LTR ERV1 27 477 -386 3 918 904 294 0 13 chr9 43682894 43683118 -80393054 + ID_B1 SINE B4 4 224 0 3 918 790 348 68 83 chr9 43683118 43683378 -80392794 + MER21B LTR ERV1 478 746 -117 3 918 352 371 62 55 chr9 43683525 43683850 -80392322 - ORR1E LTR MaLR -32 327 1 3 918 1208 75 0 0 chr9 43683868 43684014 -80392158 + B1_Mus2 SINE Alu 2 147 0 3 918 318 106 0 0 chr9 43684014 43684061 -80392111 + (A)n Simple_repeat Simple_repeat 1 47 0 3 918 388 231 26 44 chr9 43684209 43684322 -80391850 - PB1D9 SINE Alu -8 112 2 3 918 791 266 72 27 chr9 43684435 43684698 -80391474 - ORR1E LTR MaLR 0 359 85 3 918 774 150 0 8 chr9 43684715 43684836 -80391336 + B1_Mur1 SINE Alu 30 149 0 3 918 237 255 20 0 chr9 43684840 43684891 -80391281 - ORR1E LTR MaLR -280 79 28 3 918 1081 109 11 6 chr9 43685057 43685233 -80390939 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 3 918 463 133 22 11 chr9 43685233 43685324 -80390848 + CT-rich Low_complexity Low_complexity 3 94 0 3 918 276 30 0 0 chr9 43685327 43685360 -80390812 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3 918 352 111 0 18 chr9 43685386 43685441 -80390731 - B2_Mm2 SINE B2 -94 101 48 3 918 1384 41 46 6 chr9 43685475 43685648 -80390524 - B2_Mm2 SINE B2 -15 180 1 3 918 252 311 55 104 chr9 43685648 43685849 -80390323 + LTR48 LTR ERV1 588 778 -9 3 918 291 224 117 13 chr9 43686414 43686491 -80389681 - ID_B1 SINE B4 -24 200 116 3 918 252 0 0 0 chr9 43686643 43686671 -80389501 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 3 918 258 211 0 34 chr9 43687361 43687420 -80388752 - ID4_ SINE ID -26 57 1 3 918 225 0 0 0 chr9 43688797 43688822 -80387350 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 918 1363 83 28 0 chr9 43688859 43689040 -80387132 + B2_Mm2 SINE B2 1 186 -9 3 918 296 229 132 0 chr9 43689329 43689412 -80386760 + PB1 SINE Alu 32 125 -2 3 918 332 236 13 40 chr9 43689421 43689496 -80386676 + ID4_ SINE ID 1 73 -10 3 918 922 243 52 96 chr9 43689508 43689799 -80386373 + B4A SINE B4 1 278 -14 4 918 1163 107 6 0 chr9 43689899 43690077 -80386095 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 4 918 306 239 0 0 chr9 43690259 43690326 -80385846 + MER34A LTR ERV1 1 67 -504 4 918 597 322 11 32 chr9 43690648 43690834 -80385338 - B3A SINE B2 -16 182 1 4 918 1053 142 0 0 chr9 43690888 43691141 -80385031 + (CA)n Simple_repeat Simple_repeat 1 253 0 4 918 414 57 0 0 chr9 43691250 43691303 -80384869 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 918 1309 41 134 0 chr9 43691580 43691751 -80384421 + B2_Mm2 SINE B2 1 194 -1 4 918 652 269 13 8 chr9 43692452 43692603 -80383569 + ID_B1 SINE B4 87 245 -47 4 918 270 331 128 27 chr9 43692840 43692989 -80383183 + LTR48B LTR ERV1 1 164 -480 4 918 583 261 34 34 chr9 43693095 43693242 -80382930 + RSINE1 SINE B4 2 148 -17 4 918 288 0 0 0 chr9 43693258 43693290 -80382882 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 918 363 274 137 0 chr9 43693371 43693495 -80382677 - ID_B1 SINE B4 -2 222 82 4 918 298 257 66 190 chr9 43693490 43693701 -80382471 + LTR48B LTR ERV1 283 467 -177 4 918 531 229 9 9 chr9 43693710 43693816 -80382356 + PB1D10 SINE Alu 1 106 -11 4 918 219 241 17 33 chr9 43693826 43693886 -80382286 + ID2 SINE ID 1 59 -24 4 918 565 188 39 30 chr9 43694150 43694333 -80381839 - B3 SINE B2 -3 192 3 4 918 631 268 82 146 chr9 43694575 43694721 -80381451 + MTEa LTR MaLR 3 172 -207 4 918 513 0 0 0 chr9 43694721 43694778 -80381394 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 4 918 631 268 82 146 chr9 43694778 43695034 -80381138 + MTEa LTR MaLR 173 379 0 4 918 1199 68 0 0 chr9 43695088 43695235 -80380937 + B1_Mus2 SINE Alu 1 147 0 4 918 229 270 82 82 chr9 43695701 43695798 -80380374 - L3b LINE CR1 -24 458 362 4 918 688 159 14 0 chr9 43695990 43696128 -80380044 + CT-rich Low_complexity Low_complexity 2 141 0 4 918 541 311 213 0 chr9 43696166 43696401 -80379771 - B4A SINE B4 -6 286 2 4 918 329 120 0 0 chr9 43696403 43696453 -80379719 - PB1D7 SINE Alu -48 72 23 4 918 361 348 165 20 chr9 43697134 43697383 -80378789 + MLT1K LTR MaLR 66 350 -245 4 918 908 152 50 45 chr9 43697443 43697622 -80378550 - B2_Mm2 SINE B2 -14 181 2 4 918 274 295 52 10 chr9 43697725 43697821 -80378351 - MIRb SINE MIR -9 259 160 4 918 500 294 87 41 chr9 43697880 43698117 -80378055 + MLT1C LTR MaLR 87 350 -155 4 918 706 139 20 13 chr9 43698195 43698348 -80377824 + CT-rich Low_complexity Low_complexity 1 154 0 4 918 532 139 21 57 chr9 43698351 43698487 -80377685 - ORR1D1 LTR MaLR 0 384 263 4 918 296 250 0 0 chr9 43698434 43698502 -80377670 - ID_B1 SINE B4 -8 216 149 4 918 219 291 37 37 chr9 43698502 43698516 -80377656 - B1F SINE Alu -8 141 60 4 918 241 333 12 24 chr9 43699038 43699121 -80377051 + ID4_ SINE ID 2 83 0 4 918 233 358 16 24 chr9 43699155 43699281 -80376891 - MLT1I LTR MaLR -2 409 285 4 918 851 242 48 14 chr9 43699603 43699813 -80376359 + ID_B1 SINE B4 3 219 -5 4 918 614 248 157 79 chr9 43699817 43700084 -80376088 + B4A SINE B4 5 292 0 4 918 250 270 0 63 chr9 43700213 43700292 -80375880 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 4 918 390 276 72 16 chr9 43700335 43700352 -80375820 + B1F SINE Alu 5 136 -13 4 918 527 217 28 19 chr9 43700352 43700460 -80375712 + ID_B1 SINE B4 103 211 -13 4 918 189 0 0 0 chr9 43700463 43700484 -80375688 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 918 389 338 27 53 chr9 43700702 43700852 -80375320 + B1F1 SINE Alu 1 146 -3 4 918 537 318 24 28 chr9 43700908 43701199 -80374973 + L1MC4a LINE L1 5647 5936 -1946 4 918 777 262 97 4 chr9 43701329 43701597 -80374575 + L1MA6 LINE L1 6008 6300 0 4 918 1056 270 21 28 chr9 43701612 43701894 -80374278 + B4A SINE B4 1 280 -12 4 918 429 70 0 0 chr9 43701909 43701966 -80374206 + (CATA)n Simple_repeat Simple_repeat 2 58 0 4 918 398 266 291 61 chr9 43702008 43702156 -80374016 + B3A SINE B2 1 182 -16 4 918 1780 268 55 36 chr9 43702187 43703156 -80373016 + Lx6 LINE L1 6070 7440 -20 4 918 37 73 0 10 chr9 43703156 43703171 -80373001 + AT_rich Low_complexity Low_complexity 1 15 0 4 918 1286 20 0 20 chr9 43703171 43703321 -80372851 - B1_Mus2 SINE Alu 0 147 1 4 918 37 73 0 10 chr9 43703321 43703402 -80372770 + AT_rich Low_complexity Low_complexity 1 81 0 4 918 198 0 0 0 chr9 43703409 43703431 -80372741 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 918 537 16 0 0 chr9 43703457 43703519 -80372653 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 918 1862 155 12 9 chr9 43703525 43703844 -80372328 + MT2A LTR ERVL 1 320 -213 4 918 240 59 0 0 chr9 43703857 43703891 -80372281 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 4 918 737 225 7 0 chr9 43703892 43704030 -80372142 - B1_Mur1 SINE Alu -9 140 2 4 918 243 0 0 0 chr9 43704167 43704194 -80371978 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 918 243 0 0 0 chr9 43704211 43704238 -80371934 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 918 261 0 0 0 chr9 43704238 43704266 -80371906 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 918 270 0 0 0 chr9 43704639 43704669 -80371503 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 918 616 212 57 21 chr9 43704671 43704811 -80371361 - B3A SINE B2 -53 145 1 4 918 300 253 0 26 chr9 43704998 43705075 -80371097 + MTE2a LTR MaLR 289 363 -16 4 918 277 345 108 6 chr9 43705140 43705306 -80370866 - MARNA DNA Mariner -273 313 131 4 918 1006 249 18 5 chr9 43705581 43705799 -80370373 - ID_B1 SINE B4 -1 223 3 4 918 220 227 0 0 chr9 43705835 43705879 -80370293 - B1F1 SINE Alu -38 111 68 4 918 626 287 10 39 chr9 43705879 43706107 -80370065 - L1M2 LINE L1 -378 5811 5590 4 918 459 0 0 0 chr9 43708051 43708102 -80368070 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 918 187 322 32 43 chr9 43708111 43708124 -80368048 - MIRb SINE MIR -46 222 210 4 918 715 255 155 53 chr9 43708124 43708389 -80367783 - B4A SINE B4 0 292 1 4 918 187 322 32 43 chr9 43708389 43708469 -80367703 - MIRb SINE MIR -59 209 131 4 918 383 295 15 45 chr9 43708721 43708920 -80367252 - L1MC5 LINE L1 -100 7861 7669 4 918 215 255 0 0 chr9 43709240 43709291 -80366881 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 4 918 726 179 0 32 chr9 43709294 43709479 -80366693 + (TATG)n Simple_repeat Simple_repeat 2 180 0 4 918 318 186 100 0 chr9 43709516 43709586 -80366586 - B4A SINE B4 0 292 216 4 918 780 209 0 0 chr9 43709605 43709744 -80366428 - B1_Mus1 SINE Alu 0 148 10 4 918 598 265 5 98 chr9 43709749 43709933 -80366239 - B3A SINE B2 0 198 32 4 918 742 213 43 0 chr9 43709937 43710078 -80366094 + B1_Mur4 SINE Alu 4 150 0 4 918 225 238 0 0 chr9 43710091 43710133 -80366039 - B3A SINE B2 -155 43 2 4 918 1159 242 8 53 chr9 43710133 43710379 -80365793 - B4A SINE B4 -58 234 1 4 918 240 324 116 14 chr9 43710390 43710537 -80365635 + L2 LINE L2 2778 2939 -480 4 918 993 97 6 12 chr9 43710626 43710793 -80365379 + (TCTCCC)n Simple_repeat Simple_repeat 2 167 0 4 918 186 43 0 0 chr9 43710969 43710992 -80365180 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 918 257 297 54 11 chr9 43711269 43711361 -80364811 + B4A SINE B4 195 290 -2 4 918 233 218 133 33 chr9 43711311 43711401 -80364771 + B3 SINE B2 112 210 -6 4 918 807 129 0 0 chr9 43711768 43711900 -80364272 + (TC)n Simple_repeat Simple_repeat 2 133 0 4 918 332 325 24 8 chr9 43712898 43713025 -80363147 - L1MEg LINE L1 -4079 2005 1877 4 918 1286 34 0 0 chr9 43713451 43713598 -80362574 + B1_Mm SINE Alu 1 147 0 4 918 330 91 0 0 chr9 43713598 43713653 -80362519 + (A)n Simple_repeat Simple_repeat 1 55 0 4 918 226 274 9 89 chr9 43713727 43713839 -80362333 + MER67C LTR ERV1 57 159 -552 4 918 378 280 0 18 chr9 43713980 43714089 -80362083 - U6 snRNA snRNA 0 107 1 4 918 645 317 72 5 chr9 43714092 43714301 -80361871 - ID_B1 SINE B4 0 224 2 4 918 1409 89 11 0 chr9 43714657 43714847 -80361325 - B2_Mm1t SINE B2 0 193 2 4 918 297 0 0 0 chr9 43714847 43714880 -80361292 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 918 742 202 8 16 chr9 43714882 43715008 -80361164 - B1_Mur2 SINE Alu -18 131 7 4 918 189 0 0 0 chr9 43715008 43715029 -80361143 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 4 918 374 360 67 46 chr9 43715085 43715324 -80360848 - L1M5 LINE L1 -964 5182 4939 4 918 358 341 77 27 chr9 43715457 43715897 -80360275 - L1M5 LINE L1 -1295 4851 4390 4 918 501 360 67 22 chr9 43715954 43716267 -80359905 + Arthur1B DNA Tip100 123 449 -776 4 918 533 253 50 17 chr9 43716289 43716467 -80359705 + B3 SINE B2 1 190 -5 4 918 375 268 26 9 chr9 43716506 43716619 -80359553 - B3 SINE B2 0 216 102 4 918 27 0 0 0 chr9 43716747 43716774 -80359398 + AT_rich Low_complexity Low_complexity 1 27 0 4 918 734 175 173 11 chr9 43716774 43716959 -80359213 - B3 SINE B2 0 216 2 4 918 258 138 0 0 chr9 43717219 43717277 -80358895 + (T)n Simple_repeat Simple_repeat 1 58 0 4 918 706 245 7 0 chr9 43717277 43717416 -80358756 - ID_B1 SINE B4 0 224 85 4 918 323 308 91 48 chr9 43717535 43717787 -80358385 - L1ME3 LINE L1 -30 6132 5870 4 918 220 296 42 74 chr9 43718078 43718089 -80358083 - B3A SINE B2 -105 93 7 4 918 346 230 0 63 chr9 43718089 43718168 -80358004 - tRNA-Ala-GCA tRNA tRNA 0 75 2 4 918 2338 126 30 0 chr9 43718180 43718544 -80357628 + ORR1B1 LTR MaLR 5 379 -15 5 918 487 223 193 7 chr9 43718710 43718850 -80357322 - MTD LTR MaLR -2 417 252 5 918 887 250 39 0 chr9 43718853 43719033 -80357139 + ID_B1 SINE B4 33 219 -5 5 918 639 240 179 29 chr9 43719033 43719419 -80356753 + L1MC1 LINE L1 4636 5079 -1067 5 918 569 185 8 0 chr9 43719568 43719687 -80356485 + CT-rich Low_complexity Low_complexity 1 120 0 5 918 305 284 118 25 chr9 43719754 43719848 -80356324 + MLT1A LTR MaLR 237 341 -33 5 918 391 296 17 2 chr9 43719848 43719952 -80356220 + B1F SINE Alu 1 109 -41 5 918 452 213 383 0 chr9 43719968 43720123 -80356049 + B3 SINE B2 2 216 0 5 918 23 0 0 0 chr9 43720178 43720201 -80355971 + AT_rich Low_complexity Low_complexity 1 23 0 5 918 456 307 18 0 chr9 43720304 43720418 -80355754 + PB1D10 SINE Alu 1 116 -1 5 918 1847 253 81 55 chr9 43720446 43720614 -80355558 + L1MC1 LINE L1 5152 5325 -821 5 918 940 141 0 51 chr9 43720614 43720771 -80355401 + B1_Mur3 SINE Alu 1 149 0 5 918 1847 248 116 79 chr9 43720771 43721170 -80355002 + L1MC1 LINE L1 5326 5702 -631 5 918 917 226 166 24 chr9 43721170 43721501 -80354671 + MTEa LTR MaLR 1 378 -1 5 918 1847 248 116 79 chr9 43721501 43722052 -80354120 + L1MC1 LINE L1 5703 6317 -16 5 918 989 299 47 25 chr9 43722170 43722448 -80353724 - B4A SINE B4 -4 288 5 5 918 462 36 0 0 chr9 43722463 43722519 -80353653 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 918 862 267 46 4 chr9 43722555 43722796 -80353376 - B4A SINE B4 -8 284 34 5 918 433 314 25 0 chr9 43722990 43723111 -80353061 + B1F SINE Alu 10 133 -16 5 918 478 228 58 50 chr9 43723132 43723252 -80352920 + ID_B1 SINE B4 103 223 -1 5 918 703 184 19 70 chr9 43724010 43724168 -80352004 - ORR1D1 LTR MaLR 0 374 225 5 918 235 309 54 54 chr9 43724412 43724447 -80351725 - MLT2B3 LTR ERVL -424 130 1 5 918 264 207 116 84 chr9 43724447 43724542 -80351630 - ORR1D1 LTR MaLR -281 98 1 5 918 688 278 19 44 chr9 43724542 43724847 -80351325 - MLT1A LTR MaLR -78 312 39 5 918 507 45 0 0 chr9 43724849 43724915 -80351257 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 918 803 229 92 42 chr9 43725364 43725624 -80350548 - B4A SINE B4 -18 274 2 5 918 201 218 36 0 chr9 43726005 43726060 -80350112 + GA-rich Low_complexity Low_complexity 4 60 0 5 918 622 289 90 76 chr9 43726658 43726946 -80349226 + B4A SINE B4 1 292 0 5 918 189 263 165 39 chr9 43727960 43728063 -80348109 - MIRc SINE MIR -133 135 20 5 918 684 0 0 0 chr9 43729013 43729089 -80347083 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 918 238 278 52 61 chr9 43729640 43729755 -80346417 - MLT1M LTR MaLR -484 188 75 5 918 216 0 0 0 chr9 43730078 43730102 -80346070 + (CAGG)n Simple_repeat Simple_repeat 2 25 0 5 918 1215 147 126 0 chr9 43730617 43730815 -80345357 - URR1B DNA MER1_type 0 225 3 5 918 728 208 107 48 chr9 43732552 43732715 -80343457 + MTEa LTR MaLR 1 174 -205 5 918 217 106 234 0 chr9 43732715 43732762 -80343410 + B3A SINE B2 2 59 -139 5 918 231 323 84 58 chr9 43733136 43733445 -80342727 - L1MEc LINE L1 -5327 1073 757 5 918 366 250 28 9 chr9 43733543 43733556 -80342616 - PB1D10 SINE Alu -1 116 104 5 918 261 0 0 0 chr9 43733556 43733585 -80342587 + (TTG)n Simple_repeat Simple_repeat 1 29 0 5 918 366 250 28 9 chr9 43733585 43733680 -80342492 - PB1D10 SINE Alu -14 103 6 5 918 276 53 0 0 chr9 43733713 43733751 -80342421 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 918 1214 75 0 0 chr9 43733754 43733901 -80342271 - B1_Mus1 SINE Alu -1 147 1 5 918 385 289 0 28 chr9 43733919 43734026 -80342146 - B1F2 SINE Alu -1 148 45 5 918 642 26 0 0 chr9 43734026 43734102 -80342070 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 918 236 226 19 0 chr9 43734184 43734237 -80341935 - B1_Mus2 SINE Alu -93 54 1 5 918 852 183 156 0 chr9 43734306 43734486 -80341686 - B3 SINE B2 -1 215 8 5 918 2539 156 63 28 chr9 43734947 43735226 -80340946 - MT2A LTR ERVL -20 513 226 5 918 4044 32 18 105 chr9 43735226 43735787 -80340385 - RLTR1B LTR ERV1 0 512 1 5 918 2539 156 63 28 chr9 43735787 43736001 -80340171 - MT2A LTR ERVL -308 225 3 5 918 342 253 0 13 chr9 43736039 43736115 -80340057 - PB1D7 SINE Alu -1 119 45 5 918 578 215 33 11 chr9 43738591 43738738 -80337434 + B1F1 SINE Alu 2 149 0 5 918 616 119 18 0 chr9 43738788 43738897 -80337275 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 918 252 160 35 54 chr9 43739380 43739449 -80336723 + PB1D9 SINE Alu 37 111 -9 5 918 554 293 6 84 chr9 43739489 43739668 -80336504 + RSINE1 SINE B4 1 165 0 5 918 580 304 0 31 chr9 43740065 43740228 -80335944 - B4A SINE B4 -133 159 2 5 918 3234 58 8 5 chr9 43740329 43740728 -80335444 - MTB LTR MaLR 0 400 1 5 918 868 173 6 6 chr9 43743153 43743480 -80332692 + CT-rich Low_complexity Low_complexity 1 327 0 5 918 376 291 27 63 chr9 43743511 43743817 -80332355 - B4A SINE B4 -18 274 2 5 918 317 276 34 22 chr9 43744810 43744899 -80331273 - B1F SINE Alu -10 139 50 5 918 210 267 34 34 chr9 43745292 43745381 -80330791 + MIRc SINE MIR 20 108 -160 5 918 333 0 0 0 chr9 43746085 43746122 -80330050 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 918 446 244 0 0 chr9 43746326 43746408 -80329764 - ID2 SINE ID 0 83 2 5 918 259 330 104 0 chr9 43746423 43746529 -80329643 - PB1 SINE Alu -8 119 3 5 918 761 253 96 26 chr9 43746761 43747033 -80329139 + B4A SINE B4 2 292 0 5 918 230 261 9 0 chr9 43747033 43747144 -80329028 + (CA)n Simple_repeat Simple_repeat 1 112 0 5 918 324 187 9 157 chr9 43747181 43747289 -80328883 + HAL1-3A_ME LINE L1 1976 2067 -791 5 918 729 61 0 0 chr9 43747892 43747991 -80328181 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 5 918 180 111 0 0 chr9 43748001 43748028 -80328144 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 918 568 286 7 28 chr9 43749006 43749150 -80327022 + ID_B1 SINE B4 3 143 -81 5 918 284 252 14 115 chr9 43749232 43749380 -80326792 - MIRc SINE MIR -105 163 31 5 918 257 313 24 24 chr9 43749628 43749713 -80326459 - MIRb SINE MIR -134 134 50 5 918 323 248 64 0 chr9 43750977 43751181 -80324991 + (CATG)n Simple_repeat Simple_repeat 1 216 0 5 918 207 269 19 0 chr9 43751281 43751333 -80324839 + L2b LINE L2 3303 3355 -20 5 918 21 0 0 0 chr9 43751512 43751533 -80324639 + AT_rich Low_complexity Low_complexity 1 21 0 5 918 426 238 95 0 chr9 43751552 43751657 -80324515 - RSINE1 SINE B4 -36 129 15 5 918 621 170 0 0 chr9 43752457 43752598 -80323574 + (TG)n Simple_repeat Simple_repeat 2 142 0 5 918 682 365 43 80 chr9 43753377 43753948 -80322224 + MLT1N2 LTR MaLR 1 550 -12 5 918 755 295 45 29 chr9 43753948 43754192 -80321980 - MLT1A0 LTR MaLR -3 362 115 5 918 243 280 0 0 chr9 43754426 43754519 -80321653 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 918 567 256 8 0 chr9 43754635 43754756 -80321416 + ID_B1 SINE B4 89 210 -14 5 918 318 147 0 0 chr9 43754773 43754841 -80321331 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 918 1080 100 0 0 chr9 43754865 43755025 -80321147 + (GGGAGA)n Simple_repeat Simple_repeat 3 162 0 5 918 557 304 89 80 chr9 43755239 43755589 -80320583 + ORR1E LTR MaLR 5 357 -2 5 918 609 101 0 0 chr9 43755614 43755713 -80320459 + (CCCCCA)n Simple_repeat Simple_repeat 2 100 0 5 918 943 146 5 9 chr9 43756393 43756608 -80319564 + CT-rich Low_complexity Low_complexity 1 214 0 5 918 373 337 60 0 chr9 43757089 43757255 -80318917 + MLT1H LTR MaLR 149 324 -225 5 918 7714 31 2 0 chr9 43757268 43758151 -80318021 + L1Md_A LINE L1 5698 6582 0 5 918 1104 95 0 13 chr9 43758381 43758530 -80317642 + B1_Mus1 SINE Alu 2 148 0 5 918 837 29 0 0 chr9 43758536 43758640 -80317532 + (GGAAA)n Simple_repeat Simple_repeat 5 108 0 5 918 597 28 0 0 chr9 43758646 43758717 -80317455 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 5 918 539 278 90 0 chr9 43758742 43758875 -80317297 + RSINE1 SINE B4 9 153 -12 5 918 198 71 0 0 chr9 43758881 43758909 -80317263 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 5 918 486 0 0 0 chr9 43759942 43759996 -80316176 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 918 278 290 29 0 chr9 43760188 43760257 -80315915 + ID4_ SINE ID 12 82 -1 5 918 563 88 11 0 chr9 43760716 43760807 -80315365 + (GTTTG)n Simple_repeat Simple_repeat 5 96 0 5 918 528 156 79 44 chr9 43760807 43760921 -80315251 - PB1D9 SINE Alu -1 119 2 5 918 672 119 0 0 chr9 43760970 43761079 -80315093 + (TC)n Simple_repeat Simple_repeat 1 109 0 5 918 315 0 0 0 chr9 43761079 43761114 -80315058 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 918 660 276 5 57 chr9 43762378 43762570 -80313602 + B3A SINE B2 23 204 -12 5 918 610 248 128 0 chr9 43762744 43762885 -80313287 + RSINE1 SINE B4 7 165 0 5 918 24 32 0 0 chr9 43762896 43762927 -80313245 + AT_rich Low_complexity Low_complexity 1 31 0 5 918 1338 147 4 33 chr9 43763211 43763451 -80312721 - RLTR11B LTR ERVK 0 453 221 5 918 609 308 58 53 chr9 43763670 43763896 -80312276 - MYSERV-int LTR ERVK -4672 1878 1652 5 918 291 239 0 0 chr9 43763896 43763963 -80312209 + RLTR11B LTR ERVK 387 453 0 5 918 514 210 56 25 chr9 43764545 43764706 -80311466 - MIRc SINE MIR -101 167 2 5 918 369 0 0 0 chr9 43765014 43765055 -80311117 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 918 630 283 10 46 chr9 43765641 43765837 -80310335 + MER5A DNA MER1_type 1 189 0 5 918 263 317 119 0 chr9 43768775 43768876 -80307296 + MIRc SINE MIR 31 143 -125 6 918 294 29 0 0 chr9 43770650 43770685 -80305487 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 918 358 297 53 26 chr9 43771345 43771459 -80304713 - PB1D10 SINE Alu 0 117 1 6 918 536 304 43 0 chr9 43771459 43771534 -80304638 - ID SINE ID -140 84 3 6 918 609 14 0 0 chr9 43772545 43772615 -80303557 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 918 200 238 0 0 chr9 43773174 43773216 -80302956 + T-rich Low_complexity Low_complexity 1 42 0 6 918 300 280 160 0 chr9 43773257 43773357 -80302815 + PB1D7 SINE Alu 3 118 -2 6 918 348 305 0 0 chr9 43773365 43773447 -80302725 + ID SINE ID 1 82 -142 6 918 526 256 0 0 chr9 43773671 43773788 -80302384 - PB1D10 SINE Alu 0 117 1 6 918 345 293 42 17 chr9 43773932 43774050 -80302122 - MIR SINE MIR -64 198 78 6 918 570 305 24 0 chr9 43774132 43774299 -80301873 - MTEa LTR MaLR -43 336 166 6 918 551 241 0 0 chr9 43774311 43774419 -80301753 - MTEa LTR MaLR -266 113 6 6 918 587 224 0 6 chr9 43774902 43775082 -80301090 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 918 558 233 0 0 chr9 43775108 43775267 -80300905 + (CA)n Simple_repeat Simple_repeat 1 159 0 6 918 1121 234 52 19 chr9 43775342 43775612 -80300560 + B4A SINE B4 2 280 -12 6 918 351 121 0 0 chr9 43775619 43775677 -80300495 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 918 280 268 11 23 chr9 43776522 43776610 -80299562 - L2a LINE L2 -274 3152 3066 6 918 301 136 0 0 chr9 43776968 43777012 -80299160 + HAL1-3A_ME LINE L1 1969 2012 -846 6 918 291 283 0 0 chr9 43777018 43777156 -80299016 + (CA)n Simple_repeat Simple_repeat 1 138 0 6 918 213 65 0 0 chr9 43777170 43777201 -80298971 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 918 282 29 0 0 chr9 43777894 43777929 -80298243 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 919 186 356 29 50 chr9 43779684 43779823 -80296349 + L2b LINE L2 3239 3374 -1 6 919 222 350 156 7 chr9 43779907 43780048 -80296124 - MIR SINE MIR -73 189 28 6 919 349 362 77 19 chr9 43780616 43780926 -80295246 - L2a LINE L2 -19 3407 3080 6 919 183 298 0 50 chr9 43781203 43781263 -80294909 - L2a LINE L2 -637 2782 2726 6 919 300 335 38 7 chr9 43782141 43782338 -80293834 + L1MB7 LINE L1 5471 5673 -501 6 919 933 238 117 37 chr9 43782566 43782967 -80293205 + L1MB7 LINE L1 5729 6161 -23 6 919 1151 54 0 39 chr9 43782978 43783131 -80293041 - B1_Mus1 SINE Alu 0 148 2 6 919 1948 201 54 110 chr9 43783215 43783461 -80292711 + RLTR18B LTR ERVK 1 243 -269 6 919 2049 136 62 23 chr9 43783461 43783814 -80292358 - ORR1B2 LTR MaLR 0 367 1 6 919 1948 201 54 110 chr9 43783814 43783992 -80292180 + RLTR18B LTR ERVK 244 404 -108 6 919 2436 140 20 15 chr9 43783992 43784384 -80291788 - ORR1B1 LTR MaLR 0 394 1 6 919 1948 201 54 110 chr9 43784384 43784495 -80291677 + RLTR18B LTR ERVK 405 506 -6 6 919 441 298 46 0 chr9 43784495 43784626 -80291546 - L2a LINE L2 -1818 1601 1465 6 919 645 266 105 66 chr9 43784849 43785006 -80291166 + B3A SINE B2 5 172 -21 6 919 318 67 0 0 chr9 43785006 43785051 -80291121 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 919 385 266 105 66 chr9 43785051 43785074 -80291098 + B2_Mm1t SINE B2 173 192 -1 6 919 272 326 48 96 chr9 43785076 43785222 -80290950 + B4A SINE B4 2 140 -152 6 919 243 0 0 0 chr9 43785590 43785617 -80290555 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 6 919 218 116 23 0 chr9 43785618 43785661 -80290511 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 6 919 330 320 29 20 chr9 43785769 43785871 -80290301 + B4 SINE B4 76 178 -114 6 919 522 0 0 0 chr9 43785900 43785958 -80290214 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 919 984 233 122 4 chr9 43785960 43786206 -80289966 + B4A SINE B4 4 278 -14 6 919 683 160 6 33 chr9 43786241 43786422 -80289750 + CT-rich Low_complexity Low_complexity 5 180 0 6 919 431 274 79 16 chr9 43786450 43786576 -80289596 + ID_B1 SINE B4 3 136 -88 6 919 469 296 159 35 chr9 43786757 43787102 -80289070 + MTEa LTR MaLR 1 370 0 6 919 1030 138 37 47 chr9 43787707 43787855 -80288317 + B2_Mm2 SINE B2 2 145 -50 6 919 450 0 0 0 chr9 43787855 43787905 -80288267 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 919 1030 138 37 47 chr9 43787905 43787946 -80288226 + B2_Mm2 SINE B2 146 189 -6 6 919 402 69 0 0 chr9 43789060 43789118 -80287054 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 919 245 302 129 7 chr9 43789728 43789868 -80286304 - MTD LTR MaLR -70 337 181 6 919 272 130 37 0 chr9 43789868 43789922 -80286250 + CT-rich Low_complexity Low_complexity 3 58 0 6 919 246 81 0 0 chr9 43789954 43789991 -80286181 + (T)n Simple_repeat Simple_repeat 1 37 0 6 919 442 33 33 0 chr9 43789991 43790051 -80286121 - B1_Mm SINE Alu 0 147 86 6 919 3601 141 109 20 chr9 43790051 43790077 -80286095 - RMER1A Other Other 0 1030 1003 6 919 207 0 0 0 chr9 43790077 43790100 -80286072 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 919 1237 14 7 0 chr9 43790103 43790243 -80285929 - B1_Mus2 SINE Alu -6 141 1 6 919 3601 141 109 20 chr9 43790243 43790927 -80285245 - RMER1A Other Other -28 1002 256 6 919 717 263 26 21 chr9 43790967 43791161 -80285011 - MTD LTR MaLR -221 198 4 6 919 268 224 0 27 chr9 43791245 43791355 -80284817 + (CATA)n Simple_repeat Simple_repeat 1 107 0 6 919 327 104 0 0 chr9 43791423 43791471 -80284701 + (TCC)n Simple_repeat Simple_repeat 2 49 0 6 919 542 281 18 41 chr9 43791525 43791696 -80284476 + MER3 DNA MER1_type 1 167 -42 6 919 206 229 0 40 chr9 43791767 43791817 -80284355 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 6 919 339 273 7 123 chr9 43791817 43791955 -80284217 + L1MCa LINE L1 1889 2010 -4498 6 919 1196 168 117 137 chr9 43793734 43794127 -80282045 + MT2A LTR ERVL 1 456 -19 6 919 443 128 73 6 chr9 43794127 43794292 -80281880 + (TA)n Simple_repeat Simple_repeat 1 176 0 6 919 443 293 26 39 chr9 43794929 43795085 -80281087 - MLT1B LTR MaLR -232 158 5 6 919 235 279 27 48 chr9 43795329 43795476 -80280696 + GA-rich Low_complexity Low_complexity 6 149 0 6 919 825 146 53 6 chr9 43796031 43796194 -80279978 - ORR1A3 LTR MaLR 0 346 180 6 919 338 247 0 13 chr9 43798458 43798536 -80277636 - PB1D10 SINE Alu -30 87 11 6 919 363 181 0 0 chr9 43799307 43799379 -80276793 + A-rich Low_complexity Low_complexity 1 72 0 6 919 255 317 0 24 chr9 43799860 43799944 -80276228 - ID4_ SINE ID 0 83 2 6 919 333 279 80 65 chr9 43800124 43800262 -80275910 - MLT1A LTR MaLR 0 374 235 6 919 354 308 20 89 chr9 43800649 43800795 -80275377 - B1F1 SINE Alu -6 143 8 6 919 1189 159 181 8 chr9 43802932 43803186 -80272986 - MTC LTR MaLR -1 420 123 6 919 580 304 11 45 chr9 43803233 43803409 -80272763 - B3A SINE B2 -27 171 2 6 919 245 338 69 0 chr9 43803422 43803582 -80272590 - Lx8 LINE L1 -2 7471 7301 6 919 549 282 23 8 chr9 43803983 43804115 -80272057 + RSINE1 SINE B4 32 165 0 6 919 1197 94 82 11 chr9 43804152 43804334 -80271838 + B2_Mm2 SINE B2 1 195 0 6 919 23 0 0 0 chr9 43804531 43804554 -80271618 + AT_rich Low_complexity Low_complexity 1 23 0 6 919 459 152 36 107 chr9 43804554 43804575 -80271597 - Lx7 LINE L1 -2 7694 7681 6 919 917 164 0 14 chr9 43804575 43804723 -80271449 + B1_Mus2 SINE Alu 2 147 0 6 919 459 152 36 107 chr9 43804723 43804841 -80271331 - Lx7 LINE L1 -16 7680 7565 6 919 1827 150 74 6 chr9 43804857 43805193 -80270979 + RLTR15 LTR ERVK 1 359 0 6 919 2178 271 51 50 chr9 43806073 43807381 -80268791 + MYSERV-int LTR ERVK 27 759 -1567 6 919 375 315 64 34 chr9 43807382 43807586 -80268586 + RMER4A LTR ERVK 251 460 -6 6 919 4495 200 47 23 chr9 43807664 43808767 -80267405 + MYSERV-int LTR ERVK 5391 6490 -60 6 919 5435 193 103 106 chr9 43808811 43808838 -80267334 - Lx7 LINE L1 -112 7584 7564 6 919 2162 142 23 3 chr9 43808838 43809190 -80266982 + RLTR15 LTR ERVK 1 359 0 6 919 5435 193 103 106 chr9 43809190 43809475 -80266697 - Lx7 LINE L1 -133 7563 7263 6 919 720 76 0 0 chr9 43809475 43809567 -80266605 + B1_Mus2 SINE Alu 56 147 0 6 919 5435 193 103 106 chr9 43809567 43810825 -80265347 - Lx7 LINE L1 -133 7262 5928 6 919 1055 81 0 0 chr9 43810832 43810968 -80265204 + B1_Mus1 SINE Alu 2 137 -11 6 919 294 29 0 0 chr9 43810972 43811007 -80265165 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 919 1714 164 43 52 chr9 43811011 43811428 -80264744 - Lx7 LINE L1 -1755 5941 5535 6 919 783 204 15 0 chr9 43811495 43811627 -80264545 - RSINE1 SINE B4 -29 136 3 6 919 355 314 80 43 chr9 43812070 43812233 -80263939 + RMER15 LTR ERVL 300 468 -107 6 919 850 321 61 37 chr9 43812258 43812666 -80263506 + RMER15-int LTR ERVL 285 702 -4297 6 919 270 0 0 0 chr9 43812805 43812835 -80263337 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 919 310 282 88 42 chr9 43812843 43813058 -80263114 + RMER17C LTR ERVK 137 361 -49 6 919 2126 295 71 47 chr9 43813074 43813961 -80262211 + RMER15-int LTR ERVL 721 1628 -3371 6 919 281 269 128 0 chr9 43814292 43814370 -80261802 + RMER15-int LTR ERVL 2300 2387 -2612 6 919 2035 244 74 70 chr9 43814433 43814882 -80261290 + RMER15-int LTR ERVL 4164 4646 -353 6 919 3161 55 24 22 chr9 43814882 43815292 -80260880 - RLTR10A LTR ERVK 0 411 1 6 919 2035 244 74 70 chr9 43815292 43815529 -80260643 + RMER15-int LTR ERVL 4647 4853 -146 6 919 711 325 86 57 chr9 43815586 43815687 -80260485 - MLT1B LTR MaLR -30 437 337 6 919 368 247 66 171 chr9 43815687 43815868 -80260304 + RSINE1 SINE B4 2 163 -2 6 919 1011 264 38 43 chr9 43815868 43816184 -80259988 - MLT1B LTR MaLR -131 336 8 6 919 390 202 25 0 chr9 43816586 43816665 -80259507 - ID_B1 SINE B4 -2 222 142 6 919 595 309 93 31 chr9 43816683 43816980 -80259192 + MTEa LTR MaLR 31 365 -14 6 919 604 205 65 8 chr9 43816999 43817122 -80259050 + B1_Mur1 SINE Alu 1 130 -19 6 919 1508 39 0 0 chr9 43817150 43817331 -80258841 + MT2_Mm LTR ERVL 313 493 0 6 919 396 0 0 0 chr9 43817338 43817382 -80258790 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 919 277 383 95 41 chr9 43817385 43817723 -80258449 + MLT1A1 LTR MaLR 41 396 -12 6 919 319 301 51 166 chr9 43817749 43818080 -80258092 - ORR1E LTR MaLR -35 324 32 6 919 395 339 74 93 chr9 43818093 43818363 -80257809 + ORR1E LTR MaLR 1 265 -109 6 919 22 0 0 0 chr9 43818536 43818558 -80257614 + AT_rich Low_complexity Low_complexity 1 22 0 6 919 2496 262 81 43 chr9 43818626 43819540 -80256632 + Lx5 LINE L1 6022 6970 -80 6 919 340 49 0 0 chr9 43819639 43819680 -80256492 + MTB_Mm LTR MaLR 1 41 -366 6 919 672 33 6 1 chr9 43819663 43819752 -80256420 + MTB_Mm LTR MaLR 327 419 0 6 919 301 355 21 11 chr9 43819755 43819849 -80256323 + RSINE1 SINE B4 8 102 -63 6 919 253 263 26 0 chr9 43819941 43819963 -80256209 - PB1D10 SINE Alu -4 113 36 6 919 281 204 0 0 chr9 43819963 43820017 -80256155 - ID_B1 SINE B4 -54 170 117 6 919 333 330 39 0 chr9 43820074 43820177 -80255995 + ID_B1 SINE B4 1 107 -117 6 919 252 363 42 42 chr9 43820177 43820436 -80255736 - RMER17C LTR ERVK -49 361 103 7 919 393 298 96 0 chr9 43820545 43820639 -80255533 + ID_B1 SINE B4 99 201 -23 6 919 333 336 110 18 chr9 43820639 43820652 -80255520 + B1F SINE Alu 18 134 -15 7 919 195 42 0 0 chr9 43820673 43820697 -80255475 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 919 198 0 0 0 chr9 43821544 43821566 -80254606 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7 919 1144 62 7 7 chr9 43822558 43822704 -80253468 - B1_Mus1 SINE Alu -1 147 2 7 919 248 289 79 0 chr9 43822981 43823057 -80253115 - L1MC1 LINE L1 -8 6325 6244 7 919 381 284 53 94 chr9 43823109 43823280 -80252892 + RSINE1 SINE B4 2 165 0 7 919 549 225 256 36 chr9 43823321 43823657 -80252515 - L1MC1 LINE L1 -140 6193 5784 7 919 202 205 0 0 chr9 43823813 43823852 -80252320 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 919 245 241 0 33 chr9 43824000 43824060 -80252112 + PB1D10 SINE Alu 31 88 -29 7 919 610 219 24 16 chr9 43824747 43824872 -80251300 + RSINE1 SINE B4 4 129 -36 7 919 369 0 0 0 chr9 43825138 43825179 -80250993 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 919 502 271 7 57 chr9 43825237 43825378 -80250794 - B1_Mur1 SINE Alu -12 137 4 7 919 295 300 82 33 chr9 43825494 43825739 -80250433 - L1MC4 LINE L1 -549 7493 7237 7 919 345 276 18 45 chr9 43825834 43825944 -80250228 + ID_B1 SINE B4 78 184 -40 7 919 547 235 26 0 chr9 43825846 43825961 -80250211 + B1_Mm SINE Alu 5 122 -25 7 919 504 0 0 0 chr9 43825962 43826018 -80250154 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 919 467 257 78 17 chr9 43826569 43826684 -80249488 - B1F1 SINE Alu -27 122 1 7 919 300 186 113 14 chr9 43826813 43826884 -80249288 + B4 SINE B4 1 78 -214 7 919 280 279 22 34 chr9 43826884 43826902 -80249270 + BC1_Mm scRNA scRNA 1 88 -64 7 919 783 205 118 11 chr9 43826907 43827094 -80249078 + B3 SINE B2 9 215 -1 7 919 620 271 14 14 chr9 43827109 43827251 -80248921 + B4 SINE B4 117 258 -34 7 919 1416 45 0 0 chr9 43827271 43827447 -80248725 + (CA)n Simple_repeat Simple_repeat 1 176 0 7 919 358 271 90 103 chr9 43827614 43827770 -80248402 - MTEa LTR MaLR -224 155 2 7 919 654 314 102 27 chr9 43828071 43828522 -80247650 + L1MB5 LINE L1 4702 5186 -960 7 919 666 244 44 25 chr9 43829070 43829230 -80246942 + RSINE1 SINE B4 3 165 0 7 919 436 257 82 68 chr9 43829396 43829542 -80246630 + MLT1A LTR MaLR 9 156 -218 7 919 444 195 37 0 chr9 43829576 43829658 -80246514 - RSINE1 SINE B4 -37 128 44 7 919 392 244 0 132 chr9 43829728 43829803 -80246369 + L1MB5 LINE L1 5274 5336 -838 7 919 402 198 319 0 chr9 43829803 43829894 -80246278 - PB1D9 SINE Alu 0 120 1 7 919 463 207 0 12 chr9 43829894 43830007 -80246165 + L1MB5 LINE L1 5335 5437 -737 7 919 585 238 55 20 chr9 43830017 43830163 -80246009 + RSINE1 SINE B4 9 159 -6 7 919 22 35 0 0 chr9 43830163 43830192 -80245980 + AT_rich Low_complexity Low_complexity 1 29 0 7 919 763 260 66 52 chr9 43830265 43830553 -80245619 + B4A SINE B4 1 292 0 7 919 481 254 189 68 chr9 43830636 43830713 -80245459 + ID_B1 SINE B4 3 94 -130 7 919 5557 110 23 52 chr9 43830713 43831642 -80244530 - RMER17A2 LTR ERVK -4 902 1 7 919 481 254 189 68 chr9 43831642 43831754 -80244418 + ID_B1 SINE B4 95 215 -9 7 919 267 31 0 0 chr9 43831912 43831944 -80244228 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 919 306 283 92 28 chr9 43831951 43832060 -80244112 - PB1D7 SINE Alu 0 120 5 7 919 402 260 78 20 chr9 43832184 43832337 -80243835 + L1MB5 LINE L1 5744 5905 -269 7 919 254 269 0 25 chr9 43832416 43832496 -80243676 + L1MB5 LINE L1 6041 6118 -56 7 919 292 277 48 0 chr9 43832496 43832579 -80243593 + L1MB5 LINE L1 6080 6166 -8 7 919 574 241 48 14 chr9 43832594 43832741 -80243431 + RSINE1 SINE B4 3 154 -11 7 919 227 247 51 64 chr9 43832761 43832839 -80243333 + MT2B LTR ERVL 176 252 -349 7 919 551 144 87 63 chr9 43832769 43832849 -80243323 + B1_Mur4 SINE Alu 21 105 -45 7 919 2236 89 14 58 chr9 43832849 43833193 -80242979 - ORR1A4 LTR MaLR 0 329 1 7 919 510 115 0 77 chr9 43833193 43833238 -80242934 + B1_Mur4 SINE Alu 106 149 -1 7 919 257 68 23 0 chr9 43833429 43833473 -80242699 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 7 919 1120 62 7 0 chr9 43833473 43833619 -80242553 + B1_Mus1 SINE Alu 2 148 0 7 919 2343 109 129 17 chr9 43833821 43834080 -80242092 + RMER4A LTR ERVK 1 286 -180 7 919 378 0 0 0 chr9 43834080 43834122 -80242050 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 919 2343 109 129 17 chr9 43834122 43834180 -80241992 + RMER4A LTR ERVK 287 344 -122 7 919 357 24 0 0 chr9 43834180 43834222 -80241950 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 919 2343 109 129 17 chr9 43834222 43834322 -80241850 + RMER4A LTR ERVK 345 465 -1 7 919 685 230 0 7 chr9 43834417 43834557 -80241615 + B1F SINE Alu 6 144 -5 7 919 606 264 232 11 chr9 43834607 43834883 -80241289 + MLT1A0 LTR MaLR 2 338 -27 7 919 664 175 0 0 chr9 43834878 43834992 -80241180 - B1_Mur2 SINE Alu -8 141 28 7 919 342 0 0 0 chr9 43835210 43835248 -80240924 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 919 359 223 26 0 chr9 43835307 43835394 -80240778 - ID4_ SINE ID -59 93 5 7 919 360 0 0 0 chr9 43835493 43835533 -80240639 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 919 354 313 0 39 chr9 43836407 43836510 -80239662 - PB1D10 SINE Alu -5 112 14 7 919 225 295 66 109 chr9 43836418 43836555 -80239617 - MT2B LTR ERVL -345 256 126 7 919 369 299 89 6 chr9 43836543 43836701 -80239471 + MER2 DNA MER2_type 26 196 -149 7 919 215 299 0 83 chr9 43836832 43836916 -80239256 - PB1D9 SINE Alu -37 83 7 7 919 716 225 85 17 chr9 43836946 43837122 -80239050 + B3 SINE B2 23 210 -6 7 919 283 243 0 51 chr9 43837201 43837279 -80238893 + BC1_Mm scRNA scRNA 17 90 -62 7 919 403 209 0 18 chr9 43837281 43837393 -80238779 + GA-rich Low_complexity Low_complexity 1 110 0 7 919 243 227 30 0 chr9 43837517 43837583 -80238589 + ID4 SINE ID 2 69 -14 7 919 270 349 12 0 chr9 43837609 43837695 -80238477 + RSINE1 SINE B4 2 88 -77 7 919 474 75 0 0 chr9 43837992 43838059 -80238113 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 919 358 225 305 35 chr9 43838888 43839032 -80237140 - B3 SINE B2 -25 191 2 7 919 396 0 0 0 chr9 43839035 43839079 -80237093 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 919 965 224 62 5 chr9 43839080 43839291 -80236881 - B4 SINE B4 -69 223 1 7 919 493 329 92 25 chr9 43839377 43839658 -80236514 + MER74A LTR ERVL 149 448 -110 7 919 186 167 0 0 chr9 43839803 43839839 -80236333 + (CG)n Simple_repeat Simple_repeat 2 37 0 7 919 769 188 23 0 chr9 43839857 43839985 -80236187 - RSINE1 SINE B4 -31 134 4 7 919 220 250 0 0 chr9 43840815 43840867 -80235305 + C-rich Low_complexity Low_complexity 1 52 0 7 919 332 272 35 112 chr9 43841081 43841197 -80234975 + B1F2 SINE Alu 3 109 -40 7 919 297 263 129 20 chr9 43841222 43841323 -80234849 + RSINE1 SINE B4 1 112 -53 7 919 1595 129 84 100 chr9 43841406 43841530 -80234642 - ORR1D1 LTR MaLR 0 374 230 7 919 213 39 0 0 chr9 43841530 43841556 -80234616 + (CAGG)n Simple_repeat Simple_repeat 4 29 0 7 919 1595 129 84 100 chr9 43841556 43841612 -80234560 - ORR1D1 LTR MaLR -145 229 188 7 919 802 168 7 0 chr9 43841612 43841755 -80234417 + B1_Mur2 SINE Alu 5 148 -1 7 919 1595 129 84 100 chr9 43841755 43841952 -80234220 - ORR1D1 LTR MaLR -187 187 2 7 919 365 291 0 64 chr9 43841955 43842065 -80234107 + B1F SINE Alu 6 108 -41 7 919 191 294 72 14 chr9 43842070 43842139 -80234033 - L2a LINE L2 -18 3408 3336 7 919 180 0 0 0 chr9 43842280 43842300 -80233872 + (CCCCAG)n Simple_repeat Simple_repeat 3 22 0 7 919 323 229 59 59 chr9 43842332 43842434 -80233738 + PB1D7 SINE Alu 19 120 0 7 919 3091 44 18 3 chr9 43842682 43843073 -80233099 + MTB LTR MaLR 4 400 0 7 919 500 272 278 3 chr9 43843500 43843791 -80232381 - MLT1G-int LTR MaLR -145 1264 894 7 919 260 281 0 0 chr9 43843869 43843926 -80232246 - B4A SINE B4 -19 273 217 7 919 496 292 8 8 chr9 43843959 43844080 -80232092 - B3A SINE B2 -68 130 10 7 919 571 234 42 93 chr9 43844077 43844270 -80231902 - B4A SINE B4 -61 231 49 7 919 1060 293 164 24 chr9 43844301 43844882 -80231290 - MLT1G-int LTR MaLR -508 901 240 7 919 660 164 65 36 chr9 43844895 43845034 -80231138 + B1_Mur4 SINE Alu 3 145 -5 7 919 234 208 0 0 chr9 43845042 43845095 -80231077 + GA-rich Low_complexity Low_complexity 1 53 0 7 919 1940 118 87 3 chr9 43845097 43845419 -80230753 + ORR1B2 LTR MaLR 1 349 -18 7 919 2243 174 0 24 chr9 43845417 43845829 -80230343 - MTC LTR MaLR -15 406 5 7 919 658 237 19 38 chr9 43845878 43846036 -80230136 + RSINE1 SINE B4 11 165 0 7 919 2479 121 13 0 chr9 43846057 43846430 -80229742 - ORR1C1 LTR MaLR 0 378 1 7 919 355 360 78 22 chr9 43846947 43847126 -80229046 - MLT1G LTR MaLR -339 252 64 7 919 458 210 20 10 chr9 43847125 43847226 -80228946 + ID_B1 SINE B4 83 184 -40 7 919 351 0 0 0 chr9 43847234 43847273 -80228899 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 919 462 18 0 0 chr9 43847273 43847328 -80228844 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 919 506 29 0 14 chr9 43847382 43847451 -80228721 + (TTTA)n Simple_repeat Simple_repeat 1 68 0 7 919 828 127 18 71 chr9 43847451 43847621 -80228551 - B2_Mm2 SINE B2 -34 161 1 7 919 258 32 0 0 chr9 43847725 43847756 -80228416 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 7 919 806 245 90 0 chr9 43847761 43847961 -80228211 - ID_B1 SINE B4 -6 218 1 7 919 1629 116 143 27 chr9 43848414 43848743 -80227429 + ORR1B2 LTR MaLR 1 367 0 7 919 511 234 130 7 chr9 43849941 43850087 -80226085 + RSINE1 SINE B4 2 165 0 7 919 21 36 0 0 chr9 43850099 43850127 -80226045 + AT_rich Low_complexity Low_complexity 1 28 0 7 919 752 197 0 0 chr9 43850546 43850678 -80225494 + B1_Mur4 SINE Alu 3 134 -16 7 919 951 161 0 0 chr9 43850689 43850869 -80225303 + GA-rich Low_complexity Low_complexity 1 180 0 7 919 420 255 51 0 chr9 43852357 43852455 -80223717 + B1_Mur1 SINE Alu 38 140 -9 7 919 207 0 0 0 chr9 43852455 43852478 -80223694 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 7 919 391 260 57 9 chr9 43853130 43853235 -80222937 + PB1D9 SINE Alu 9 118 -2 8 919 184 290 71 14 chr9 43853236 43853306 -80222866 - L2a LINE L2 -14 3412 3339 8 919 583 126 29 0 chr9 43853464 43853567 -80222605 - B1_Mus2 SINE Alu -2 145 40 8 919 258 233 0 0 chr9 43853570 43853656 -80222516 + CT-rich Low_complexity Low_complexity 2 87 0 8 919 286 125 0 0 chr9 43853727 43853767 -80222405 + MurSatRep1 Unknown Unknown 230 269 -1868 8 919 782 165 14 48 chr9 43854307 43854453 -80221719 + B1_Mur4 SINE Alu 6 146 -4 8 919 355 335 71 49 chr9 43854314 43854540 -80221632 + MT2B LTR ERVL 176 406 -195 8 919 261 0 0 0 chr9 43855093 43855122 -80221050 + (A)n Simple_repeat Simple_repeat 1 29 0 8 919 552 285 20 7 chr9 43858234 43858386 -80217786 + RSINE1 SINE B4 2 155 -10 8 919 201 175 0 0 chr9 43858398 43858438 -80217734 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 919 344 314 57 0 chr9 43858977 43859101 -80217071 + B1F SINE Alu 6 136 -13 8 919 316 342 33 0 chr9 43859228 43859348 -80216824 + L1MD2 LINE L1 6167 6290 -69 8 919 701 173 8 0 chr9 43859372 43859499 -80216673 - B3 SINE B2 -88 128 1 8 919 1610 21 5 0 chr9 43859607 43859798 -80216374 + B2_Mm1t SINE B2 2 193 0 8 919 336 189 0 0 chr9 43859799 43859873 -80216299 + (CA)n Simple_repeat Simple_repeat 2 75 0 8 919 381 167 12 49 chr9 43859894 43859976 -80216196 + MLT1A0 LTR MaLR 287 365 0 8 919 769 172 0 7 chr9 43860055 43860190 -80215982 + B1_Mur2 SINE Alu 14 147 -2 8 919 306 164 0 0 chr9 43860212 43860267 -80215905 + GA-rich Low_complexity Low_complexity 3 57 0 8 919 701 273 107 59 chr9 43860267 43860454 -80215718 + B4A SINE B4 7 207 -85 8 919 279 0 0 0 chr9 43860454 43860485 -80215687 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 919 701 273 107 59 chr9 43860485 43860550 -80215622 + B4A SINE B4 208 271 -21 8 919 396 0 0 0 chr9 43860550 43860594 -80215578 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 919 344 22 22 0 chr9 43860594 43860638 -80215534 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 8 919 369 191 15 0 chr9 43860695 43860763 -80215409 + ID_B1 SINE B4 140 208 -16 8 919 320 0 25 0 chr9 43860767 43860807 -80215365 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 8 919 238 295 0 0 chr9 43860868 43860929 -80215243 + RSINE1 SINE B4 12 72 -93 8 919 359 317 73 6 chr9 43861045 43861210 -80214962 + MT2A LTR ERVL 6 181 -352 8 919 510 96 0 0 chr9 43861251 43861324 -80214848 + (TGG)n Simple_repeat Simple_repeat 1 73 0 8 919 293 140 0 17 chr9 43861325 43861383 -80214789 + GA-rich Low_complexity Low_complexity 3 59 0 8 919 1297 57 79 0 chr9 43861802 43861960 -80214212 + B2_Mm1a SINE B2 3 160 -33 8 919 279 0 0 0 chr9 43861960 43861991 -80214181 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 8 919 1297 57 79 0 chr9 43861991 43862009 -80214163 + B2_Mm1a SINE B2 161 191 -2 8 919 932 245 28 19 chr9 43862233 43862449 -80213723 + ID_B1 SINE B4 3 220 -4 8 919 396 237 65 0 chr9 43862487 43862580 -80213592 + B1F SINE Alu 1 99 -50 8 919 232 284 43 29 chr9 43862652 43862721 -80213451 + PB1D10 SINE Alu 34 103 -14 8 919 803 112 19 71 chr9 43862723 43863054 -80213118 + GA-rich Low_complexity Low_complexity 1 313 0 8 919 429 211 45 18 chr9 43863058 43863169 -80213003 + PB1D9 SINE Alu 4 117 -3 8 919 414 309 67 63 chr9 43863321 43863559 -80212613 + MLT1G3 LTR MaLR 169 407 -188 8 919 376 172 299 7 chr9 43863730 43863881 -80212291 + B3A SINE B2 1 199 -17 8 919 990 131 0 0 chr9 43863881 43864026 -80212146 + B1_Mus1 SINE Alu 2 146 -2 8 919 347 216 303 18 chr9 43864026 43864039 -80212133 + B3 SINE B2 200 211 -5 8 919 379 250 25 41 chr9 43864219 43864340 -80211832 + ID_B1 SINE B4 105 223 -1 8 919 1319 253 27 92 chr9 43864482 43864886 -80211286 + MTE2a LTR MaLR 2 379 0 8 919 245 291 12 71 chr9 43864886 43864966 -80211206 + MLT1A0 LTR MaLR 80 154 -211 8 919 341 257 17 95 chr9 43865104 43865220 -80210952 + MT2A LTR ERVL 151 257 -344 8 919 786 165 15 0 chr9 43865122 43865255 -80210917 + B1_Mur2 SINE Alu 7 141 -8 8 919 243 0 0 0 chr9 43865256 43865283 -80210889 + (TA)n Simple_repeat Simple_repeat 2 28 0 8 919 367 252 38 28 chr9 43865294 43865400 -80210772 + MLT1A1 LTR MaLR 302 408 0 8 919 738 261 23 41 chr9 43865543 43865692 -80210480 + ID_B1 SINE B4 2 155 -69 8 919 1379 69 26 5 chr9 43865692 43865881 -80210291 + B2_Mm2 SINE B2 1 193 -2 8 919 738 261 23 41 chr9 43865881 43865951 -80210221 + ID_B1 SINE B4 156 217 -7 8 919 530 286 133 18 chr9 43866306 43866584 -80209588 + MLT1E2 LTR MaLR 318 627 0 8 919 412 286 118 24 chr9 43867064 43867275 -80208897 + MLT1C LTR MaLR 6 236 -231 8 919 1126 36 0 7 chr9 43867412 43867551 -80208621 - B1_Mus2 SINE Alu -9 138 1 8 919 791 297 15 40 chr9 43867687 43867981 -80208191 + B4A SINE B4 2 292 0 8 919 395 38 19 0 chr9 43868007 43868060 -80208112 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 919 233 368 174 0 chr9 43868310 43868465 -80207707 + MER5A DNA MER1_type 8 189 0 8 919 289 198 170 0 chr9 43868480 43868562 -80207610 - BC1_Mm scRNA scRNA -55 97 4 8 919 246 328 36 21 chr9 43868583 43868723 -80207449 - B1F SINE Alu -7 142 1 8 919 277 349 149 0 chr9 43868728 43868989 -80207183 + L2a LINE L2 1415 1714 -1705 8 919 319 345 95 9 chr9 43869013 43869258 -80206914 + RSINE1 SINE B4 18 281 -11 8 919 195 42 0 0 chr9 43869283 43869307 -80206865 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 919 193 269 0 93 chr9 43869326 43869412 -80206760 + L2a LINE L2 1920 1997 -1422 8 919 258 191 0 0 chr9 43869413 43869455 -80206717 + polypurine Low_complexity Low_complexity 3 44 0 8 919 840 74 18 41 chr9 43869457 43869627 -80206545 + (GGGAA)n Simple_repeat Simple_repeat 2 167 0 8 919 241 155 0 33 chr9 43869626 43869686 -80206486 + GA-rich Low_complexity Low_complexity 1 58 0 8 919 1127 117 0 6 chr9 43869691 43869872 -80206300 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 919 383 308 157 34 chr9 43869945 43870301 -80205871 + L2a LINE L2 2046 2445 -974 8 919 243 0 0 0 chr9 43870381 43870408 -80205764 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 919 1330 83 5 20 chr9 43870424 43870621 -80205551 + B2_Mm2 SINE B2 1 194 -1 8 919 336 102 0 0 chr9 43870987 43871036 -80205136 + (TATG)n Simple_repeat Simple_repeat 2 50 0 8 919 291 365 88 23 chr9 43871449 43871665 -80204507 + L2a LINE L2 2566 2795 -624 8 919 2068 160 71 5 chr9 43871917 43872312 -80203860 - MTC LTR MaLR 0 421 1 8 919 220 253 92 0 chr9 43872404 43872491 -80203681 + L2a LINE L2 2969 3063 -312 8 919 542 115 124 9 chr9 43872491 43872596 -80203576 + MTC LTR MaLR 36 152 -269 8 919 326 347 161 10 chr9 43872599 43872890 -80203282 + L2a LINE L2 3055 3389 -37 8 919 1273 87 16 16 chr9 43872949 43873135 -80203037 + B2_Mm2 SINE B2 1 186 -9 8 919 808 102 117 112 chr9 43873377 43873565 -80202607 + B2_Mm2 SINE B2 3 191 -4 8 919 500 177 94 0 chr9 43873727 43873823 -80202349 + B1_Mur4 SINE Alu 46 150 0 8 919 807 150 243 23 chr9 43873832 43874009 -80202163 + B3 SINE B2 1 216 0 8 919 701 153 0 8 chr9 43874096 43874215 -80201957 + B3 SINE B2 3 120 -96 8 919 274 346 78 42 chr9 43874439 43874581 -80201591 + MIRb SINE MIR 109 255 -13 8 919 31 0 0 0 chr9 43874719 43874750 -80201422 + AT_rich Low_complexity Low_complexity 1 31 0 8 919 414 0 0 0 chr9 43875995 43876041 -80200131 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 919 227 73 0 47 chr9 43876781 43876824 -80199348 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 8 919 746 136 83 0 chr9 43876825 43876957 -80199215 - B1_Mur3 SINE Alu 0 149 7 8 919 372 230 119 80 chr9 43876867 43877018 -80199154 - MT2B LTR ERVL -349 252 96 8 919 306 0 0 0 chr9 43877937 43877971 -80198201 + (A)n Simple_repeat Simple_repeat 1 34 0 8 919 471 248 69 52 chr9 43881636 43881810 -80194362 - MIRb SINE MIR -37 231 55 8 919 512 295 25 13 chr9 43881814 43881942 -80194230 + RSINE1 SINE B4 2 127 -38 8 919 377 20 0 20 chr9 43881942 43881993 -80194179 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 919 512 295 25 13 chr9 43881993 43882022 -80194150 + RSINE1 SINE B4 128 160 -5 8 919 1308 54 54 0 chr9 43882041 43882225 -80193947 - B2_Mm2 SINE B2 0 195 2 8 919 191 62 0 59 chr9 43882284 43882318 -80193854 + (CACCC)n Simple_repeat Simple_repeat 5 36 0 8 919 203 214 234 12 chr9 43882484 43882612 -80193560 + MIRc SINE MIR 46 199 -9 8 919 189 343 14 0 chr9 43885707 43885777 -80190395 + MER5A DNA MER1_type 85 155 -34 8 919 294 250 309 7 chr9 43886377 43886526 -80189646 + MIR SINE MIR 65 258 -4 8 919 333 300 22 0 chr9 43886751 43886841 -80189331 + MIRc SINE MIR 128 219 -49 8 919 205 138 0 0 chr9 43887433 43887462 -80188710 + (C)n Simple_repeat Simple_repeat 1 29 0 8 919 194 0 39 0 chr9 43888161 43888187 -80187985 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 919 475 226 78 0 chr9 43889832 43889934 -80186238 - PB1D10 SINE Alu -6 111 2 8 919 282 421 11 11 chr9 43890034 43890214 -80185958 + MIRb SINE MIR 47 226 -42 8 919 503 328 74 6 chr9 43890263 43890438 -80185734 - ID_B1 SINE B4 -28 196 10 8 919 424 291 74 0 chr9 43890473 43890621 -80185551 - RSINE1 SINE B4 -4 161 3 8 919 261 242 48 0 chr9 43890813 43890875 -80185297 - RMER15 LTR ERVL -105 470 406 8 919 497 204 61 0 chr9 43890919 43891017 -80185155 - PB1D10 SINE Alu -13 104 1 8 919 235 300 0 54 chr9 43890957 43891031 -80185141 - B4A SINE B4 -141 151 82 8 919 707 153 7 30 chr9 43891045 43891056 -80185116 - B1_Mus2 SINE Alu 0 147 140 8 919 207 0 0 0 chr9 43891056 43891079 -80185093 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 8 919 707 153 7 30 chr9 43891079 43891202 -80184970 - B1_Mus2 SINE Alu -8 139 16 8 919 350 192 158 20 chr9 43891252 43891338 -80184834 + B1F2 SINE Alu 27 127 -22 8 919 342 0 0 0 chr9 43891338 43891376 -80184796 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 919 350 192 158 20 chr9 43891376 43891390 -80184782 + B1F2 SINE Alu 128 140 -9 8 919 322 311 9 28 chr9 43891411 43891520 -80184652 - RSINE1 SINE B4 -57 108 2 9 919 231 345 24 0 chr9 43892615 43892699 -80183473 + Charlie4z DNA MER1_type 64 149 -18 9 919 182 37 0 36 chr9 43892931 43892959 -80183213 + (CGGGG)n Simple_repeat Simple_repeat 4 30 0 9 919 220 219 15 15 chr9 43894731 43894796 -80181376 + C-rich Low_complexity Low_complexity 2 66 0 9 919 420 277 0 16 chr9 43894827 43894948 -80181224 + PB1D9 SINE Alu 2 120 0 9 919 238 0 53 26 chr9 43895491 43895529 -80180643 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 919 472 244 8 70 chr9 43896673 43896801 -80179371 - ID_B1 SINE B4 -20 204 85 9 919 246 235 21 105 chr9 43896721 43896816 -80179356 - MT2B LTR ERVL -363 238 152 9 919 550 188 71 3 chr9 43896902 43897016 -80179156 + PB1D7 SINE Alu 1 120 0 9 919 222 37 0 0 chr9 43898577 43898604 -80177568 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 9 919 381 176 163 11 chr9 43898604 43898696 -80177476 - PB1D10 SINE Alu 0 117 12 9 919 591 135 0 0 chr9 43898771 43898867 -80177305 + (CA)n Simple_repeat Simple_repeat 1 96 0 9 919 22 56 0 0 chr9 43898867 43898903 -80177269 + AT_rich Low_complexity Low_complexity 1 36 0 9 919 667 212 35 28 chr9 43898906 43899047 -80177125 + B1_Mus1 SINE Alu 1 142 -6 9 919 254 299 0 83 chr9 43899523 43899607 -80176565 - ID4_ SINE ID 0 83 7 9 919 422 243 96 10 chr9 43899637 43899741 -80176431 + PB1D10 SINE Alu 1 113 -4 9 919 202 213 21 0 chr9 43900909 43900956 -80175216 + GA-rich Low_complexity Low_complexity 2 49 0 9 919 282 56 0 0 chr9 43901074 43901110 -80175062 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 919 634 222 59 8 chr9 43901444 43901585 -80174587 + ID_B1 SINE B4 82 232 -60 9 919 259 314 10 12 chr9 43901585 43901698 -80174474 + B3 SINE B2 1 112 -83 9 919 261 118 0 0 chr9 43902016 43902067 -80174105 + (A)n Simple_repeat Simple_repeat 1 51 0 9 919 236 204 0 0 chr9 43902682 43902731 -80173441 + T-rich Low_complexity Low_complexity 1 49 0 9 919 297 312 0 0 chr9 43904402 43904482 -80171690 - ID SINE ID -141 83 4 9 919 672 170 287 12 chr9 43905306 43905473 -80170699 + B3 SINE B2 4 216 0 9 919 221 327 103 0 chr9 43905964 43906071 -80170101 + MIRb SINE MIR 115 232 -36 9 919 274 292 118 59 chr9 43906084 43906237 -80169935 + RSINE1 SINE B4 4 165 0 9 919 484 250 0 0 chr9 43906303 43906395 -80169777 + RSINE1 SINE B4 3 94 -71 9 919 228 302 16 0 chr9 43906396 43906459 -80169713 + B3 SINE B2 128 191 -25 9 919 513 0 0 0 chr9 43907143 43907200 -80168972 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 919 934 135 14 41 chr9 43907203 43907350 -80168822 - B1_Mur3 SINE Alu -6 143 1 9 919 298 245 92 7 chr9 43907597 43907700 -80168472 + MIRm SINE MIR 37 143 -125 9 919 1253 27 0 7 chr9 43907700 43907848 -80168324 - B1_Mm SINE Alu 0 147 1 9 919 246 366 31 41 chr9 43907848 43907964 -80168208 + MIRb SINE MIR 144 259 -9 9 919 334 193 125 0 chr9 43908312 43908400 -80167772 + PB1 SINE Alu 29 127 0 9 919 329 239 0 0 chr9 43908748 43908819 -80167353 + ID_B1 SINE B4 143 213 -11 9 919 797 99 8 0 chr9 43908819 43908940 -80167232 + (GA)n Simple_repeat Simple_repeat 2 123 0 9 919 261 0 0 0 chr9 43908940 43908968 -80167204 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 9 114 1503 73 16 0 chr9 43909001 43909193 -80166979 + B2_Mm2 SINE B2 1 195 0 9 920 804 21 0 0 chr9 43909205 43909299 -80166873 + (GGAAA)n Simple_repeat Simple_repeat 1 94 0 9 920 255 114 0 0 chr9 43910626 43910670 -80165502 + (CCA)n Simple_repeat Simple_repeat 2 45 0 9 920 241 249 55 24 chr9 43911182 43911311 -80164861 + MIR SINE MIR 60 190 -78 9 920 542 178 92 18 chr9 43912165 43912274 -80163898 - PB1D9 SINE Alu 0 120 4 9 920 335 231 181 47 chr9 43912377 43912504 -80163668 - B1F2 SINE Alu -2 147 4 9 920 261 0 0 0 chr9 43914597 43914626 -80161546 + (TGGG)n Simple_repeat Simple_repeat 1 29 0 9 920 223 337 48 12 chr9 43917395 43917479 -80158693 + MER91A DNA Tip100 81 167 -29 9 920 565 117 301 18 chr9 43918365 43918478 -80157694 + B1_Mur3 SINE Alu 5 149 0 9 920 183 42 0 0 chr9 43919359 43919383 -80156789 + (GCGTG)n Simple_repeat Simple_repeat 5 28 0 9 920 201 278 0 32 chr9 43921336 43921429 -80154743 + (CCGGG)n Simple_repeat Simple_repeat 2 91 0 9 920 296 88 42 42 chr9 43921959 43922004 -80154168 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 9 920 1015 60 97 0 chr9 43922004 43922138 -80154034 - B1_Mus2 SINE Alu 0 147 1 9 920 296 88 42 42 chr9 43922138 43922163 -80154009 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 9 920 190 287 112 22 chr9 43922250 43922339 -80153833 - L3 LINE CR1 -1621 2868 2772 9 920 1165 265 40 50 chr9 43922400 43922821 -80153351 + MTD LTR MaLR 3 419 0 9 920 765 59 0 0 chr9 43923014 43923116 -80153056 + B1_Mm SINE Alu 34 135 -12 9 920 369 241 71 9 chr9 43923172 43923285 -80152887 + PB1D9 SINE Alu 1 120 0 9 920 195 69 0 0 chr9 43924023 43924052 -80152120 + (T)n Simple_repeat Simple_repeat 1 29 0 9 920 223 282 62 37 chr9 43924218 43924299 -80151873 + RSINE1 SINE B4 1 83 -82 9 920 948 115 66 81 chr9 43924402 43924568 -80151604 + B2_Mm2 SINE B2 1 161 -34 9 920 474 108 0 0 chr9 43924568 43924642 -80151530 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 9 920 1227 61 0 0 chr9 43924651 43924798 -80151374 + B1_Mm SINE Alu 1 147 0 9 920 948 115 66 81 chr9 43924798 43924819 -80151353 + B2_Mm2 SINE B2 169 194 -1 9 920 1258 41 0 0 chr9 43925324 43925470 -80150702 + B1_Mus2 SINE Alu 2 147 0 9 920 34 0 0 0 chr9 43925504 43925538 -80150634 + AT_rich Low_complexity Low_complexity 1 34 0 9 920 369 221 15 0 chr9 43925548 43925616 -80150556 + ID4 SINE ID 4 72 -11 9 920 327 246 0 40 chr9 43925772 43925848 -80150324 + ID4 SINE ID 3 75 -8 9 920 401 248 19 67 chr9 43925881 43925985 -80150187 + PB1D7 SINE Alu 1 99 -21 9 920 807 219 35 30 chr9 43926414 43926616 -80149556 + B3 SINE B2 2 204 -12 9 920 788 210 98 39 chr9 43926681 43926884 -80149288 - B3 SINE B2 0 216 2 9 920 746 181 72 0 chr9 43926932 43927070 -80149102 + B1_Mus1 SINE Alu 1 148 0 9 920 785 197 190 6 chr9 43927214 43927393 -80148779 - B3 SINE B2 -4 212 1 9 920 253 222 19 0 chr9 43927427 43927481 -80148691 + B1_Mus1 SINE Alu 1 55 -93 9 920 945 176 0 20 chr9 43927547 43927698 -80148474 + B1_Mus1 SINE Alu 1 148 0 9 920 696 200 32 0 chr9 43928448 43928573 -80147599 + B1_Mur2 SINE Alu 2 130 -19 9 920 4105 159 80 76 chr9 43928930 43929375 -80146797 + RMER19B LTR ERVK 1 428 -474 9 920 231 36 0 0 chr9 43929375 43929403 -80146769 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 9 920 4105 159 80 76 chr9 43929403 43929831 -80146341 + RMER19B LTR ERVK 429 885 -17 9 920 1593 52 5 0 chr9 43929831 43930023 -80146149 + B2_Mm1a SINE B2 1 193 0 9 920 4105 159 80 76 chr9 43930023 43930046 -80146126 + RMER19B LTR ERVK 886 902 0 9 920 1337 18 18 0 chr9 43930076 43930242 -80145930 + B2_Mm1t SINE B2 1 169 -24 9 920 2990 11 3 16 chr9 43930241 43930615 -80145557 - MTA_Mm LTR MaLR -27 369 1 9 920 419 234 0 0 chr9 43930636 43930730 -80145442 - PB1D10 SINE Alu -2 115 22 9 920 1192 56 0 7 chr9 43930845 43930990 -80145182 - B1_Mm SINE Alu -2 145 2 9 920 293 231 0 30 chr9 43931022 43931089 -80145083 - PB1D7 SINE Alu 0 120 56 9 920 502 115 0 0 chr9 43931204 43931282 -80144890 + B1_Mur4 SINE Alu 70 147 -3 9 920 337 260 87 29 chr9 43931316 43931419 -80144753 + PB1D9 SINE Alu 6 114 -6 9 920 500 250 8 48 chr9 43931425 43931551 -80144621 + B3 SINE B2 71 191 -25 9 920 301 211 0 0 chr9 43931555 43931612 -80144560 + B1_Mur4 SINE Alu 92 148 -2 9 920 1314 108 0 26 chr9 43931620 43931811 -80144361 - B2_Mm2 SINE B2 -9 186 1 9 920 22 35 0 0 chr9 43931811 43931840 -80144332 + AT_rich Low_complexity Low_complexity 1 29 0 9 920 1155 28 43 0 chr9 43931840 43931981 -80144191 - B1_Mm SINE Alu 0 147 1 9 920 1110 103 49 44 chr9 43932095 43932278 -80143894 + B2_Mm2 SINE B2 2 185 -10 9 920 1190 75 0 0 chr9 43932654 43932801 -80143371 + B1_Mus2 SINE Alu 1 147 0 9 920 563 250 0 8 chr9 43932908 43933033 -80143139 - RSINE1 SINE B4 -34 131 8 9 920 305 214 162 19 chr9 43933029 43933134 -80143038 + B1F SINE Alu 29 148 -1 9 920 232 210 48 0 chr9 43933173 43933235 -80142937 + GA-rich Low_complexity Low_complexity 4 68 0 9 920 2341 134 44 0 chr9 43934625 43934991 -80141181 + RLTR14 LTR ERV1 1 382 0 9 920 1025 109 7 7 chr9 43935008 43935155 -80141017 + B1_Mur4 SINE Alu 3 149 -1 9 920 198 0 0 0 chr9 43935243 43935265 -80140907 + (T)n Simple_repeat Simple_repeat 1 22 0 9 920 493 250 17 33 chr9 43935268 43935388 -80140784 - PB1D9 SINE Alu -1 119 2 9 920 367 211 45 63 chr9 43935396 43935507 -80140665 - PB1D10 SINE Alu -8 109 1 9 920 412 261 127 24 chr9 43935570 43935735 -80140437 - FAM SINE Alu 0 185 4 9 920 674 291 33 14 chr9 43935941 43936154 -80140018 + ID_B1 SINE B4 4 220 -4 9 920 1516 38 22 5 chr9 43936163 43936348 -80139824 + B2_Mm1a SINE B2 2 189 -4 9 920 301 158 49 62 chr9 43936354 43936435 -80139737 + MT2B LTR ERVL 185 264 -337 9 920 673 69 0 65 chr9 43936366 43936474 -80139698 + B1_Mus2 SINE Alu 47 147 0 1 920 289 258 146 0 chr9 43936475 43936564 -80139608 - PB1D10 SINE Alu -13 104 3 1 920 636 156 15 90 chr9 43936586 43936720 -80139452 - B1_Mur3 SINE Alu -2 147 24 1 920 301 312 18 27 chr9 43936757 43936869 -80139303 - PB1D10 SINE Alu -2 115 5 1 920 1250 216 80 84 chr9 43937168 43937619 -80138553 - RMER4A LTR ERVK -1 465 17 1 920 333 0 0 0 chr9 43940063 43940100 -80136072 + (CTG)n Simple_repeat Simple_repeat 2 38 0 1 920 1165 69 0 0 chr9 43940150 43940295 -80135877 + B1_Mus2 SINE Alu 2 146 -1 1 920 755 78 0 0 chr9 43940964 43941067 -80135105 - B1_Mus2 SINE Alu -1 146 44 1 920 47 73 0 0 chr9 43942615 43942711 -80133461 + GC_rich Low_complexity Low_complexity 1 96 0 1 920 186 43 0 0 chr9 43945453 43945476 -80130696 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 920 731 222 77 43 chr9 43945511 43945718 -80130454 + B3 SINE B2 3 216 0 1 920 1115 102 0 0 chr9 43945719 43945866 -80130306 + B1_Mm SINE Alu 1 147 0 1 920 245 216 119 40 chr9 43946090 43946191 -80129981 - PB1D10 SINE Alu -8 109 1 1 920 777 269 27 50 chr9 43946236 43946455 -80129717 + MER20 DNA MER1_type 6 219 0 1 920 250 261 46 0 chr9 43946620 43946685 -80129487 - ID4_ SINE ID 0 83 16 1 920 249 108 0 0 chr9 43950697 43950734 -80125438 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 920 22 35 0 0 chr9 43951074 43951103 -80125069 + AT_rich Low_complexity Low_complexity 1 29 0 1 920 806 116 0 35 chr9 43952380 43952523 -80123649 + GA-rich Low_complexity Low_complexity 1 138 0 1 920 398 292 9 45 chr9 43954134 43954245 -80121927 + MTEa LTR MaLR 208 314 -65 1 920 254 310 67 25 chr9 43954420 43954539 -80121633 - B1F2 SINE Alu -13 136 13 1 920 679 267 98 5 chr9 43956957 43957160 -80119012 - ID_B1 SINE B4 -2 222 1 1 920 882 213 21 128 chr9 43957323 43957565 -80118607 - B3 SINE B2 0 216 1 1 920 293 242 148 20 chr9 43957565 43957666 -80118506 - PB1D10 SINE Alu -3 114 1 1 920 189 0 0 0 chr9 43958710 43958731 -80117441 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 920 498 246 8 17 chr9 43959940 43960060 -80116112 - PB1D7 SINE Alu 0 120 2 1 920 210 267 15 104 chr9 43960069 43960136 -80116036 - ID SINE ID -139 85 25 1 920 443 251 10 28 chr9 43961691 43961807 -80114365 - PB1D10 SINE Alu -19 130 9 1 920 192 40 0 0 chr9 43962505 43962530 -80113642 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 920 1232 35 0 0 chr9 43962652 43962793 -80113379 + B1_Mus1 SINE Alu 1 141 -7 1 920 198 0 0 0 chr9 43962793 43962815 -80113357 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 920 1610 32 0 16 chr9 43962976 43963168 -80113004 + B2_Mm2 SINE B2 1 189 -6 1 920 244 195 24 0 chr9 43963305 43963346 -80112826 - ID4 SINE ID -7 76 35 1 920 1118 198 14 19 chr9 43963425 43963641 -80112531 + B3 SINE B2 2 216 0 1 920 303 49 0 0 chr9 43963881 43963922 -80112250 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 1 920 324 159 0 31 chr9 43963922 43963978 -80112194 - B1_Mur3 SINE Alu -7 142 87 1 920 687 218 16 0 chr9 43963998 43964122 -80112050 - B1_Mur2 SINE Alu -11 138 13 1 920 571 259 120 0 chr9 43964346 43964504 -80111668 - B3A SINE B2 -21 177 1 1 920 215 188 41 20 chr9 43964549 43964598 -80111574 - ID_B1 SINE B4 -94 130 81 1 920 180 0 0 0 chr9 43964641 43964661 -80111511 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 920 22 0 0 0 chr9 43965237 43965259 -80110913 + AT_rich Low_complexity Low_complexity 1 22 0 1 920 1688 21 0 20 chr9 43965264 43965461 -80110711 - B2_Mm1a SINE B2 0 193 1 1 920 919 198 72 5 chr9 43965554 43965747 -80110425 - B3 SINE B2 -10 206 1 1 920 258 372 35 9 chr9 43965808 43965922 -80110250 - RSINE1 SINE B4 -31 134 18 1 920 578 242 83 0 chr9 43965976 43966096 -80110076 - B1F2 SINE Alu -5 144 15 1 920 250 309 9 134 chr9 43966242 43966264 -80109908 + MT2B LTR ERVL 150 157 -444 1 920 352 348 18 9 chr9 43966264 43966377 -80109795 + PB1D10 SINE Alu 1 114 -3 1 920 830 157 28 7 chr9 43966378 43966519 -80109653 - B1_Mm SINE Alu -1 146 3 1 920 372 214 121 100 chr9 43967502 43967642 -80108530 + RSINE1 SINE B4 23 165 0 1 920 252 59 0 0 chr9 43968014 43968048 -80108124 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 920 431 285 15 109 chr9 43968068 43968269 -80107903 - B3A SINE B2 -16 182 1 1 920 2424 169 14 9 chr9 43968311 43968730 -80107442 - MTC LTR MaLR 0 421 1 1 920 1421 162 134 123 chr9 43969433 43969501 -80106671 - ORR1D1 LTR MaLR -3 371 320 1 920 1181 48 7 0 chr9 43969501 43969647 -80106525 + B1_Mus2 SINE Alu 1 147 0 1 920 1421 162 134 123 chr9 43969647 43969943 -80106229 - ORR1D1 LTR MaLR -55 319 3 1 920 796 136 0 46 chr9 43970003 43970134 -80106038 - B1_Mus2 SINE Alu -17 130 6 1 920 955 230 28 19 chr9 43970270 43970483 -80105689 + B3 SINE B2 2 216 0 1 920 204 40 0 0 chr9 43970712 43970737 -80105435 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 1 920 242 289 0 126 chr9 43970737 43970789 -80105383 - ID4 SINE ID -7 76 32 1 920 1160 198 59 208 chr9 43970789 43971097 -80105075 + MTC LTR MaLR 4 231 -190 1 920 664 29 48 0 chr9 43971097 43971200 -80104972 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 920 1160 198 59 208 chr9 43971200 43971382 -80104790 + MTC LTR MaLR 232 421 0 1 920 242 289 0 126 chr9 43971382 43971416 -80104756 - ID4 SINE ID -52 31 1 1 920 327 372 55 59 chr9 43971723 43971792 -80104380 + ID SINE ID 6 67 -157 1 920 599 137 287 27 chr9 43971792 43971942 -80104230 + B2_Mm2 SINE B2 1 189 -6 1 920 327 372 55 59 chr9 43971942 43972092 -80104080 + ID_B1 SINE B4 68 224 0 1 920 912 246 45 38 chr9 43972445 43972733 -80103439 + B4A SINE B4 1 290 -2 1 920 297 189 0 0 chr9 43973054 43973107 -80103065 + B3 SINE B2 1 53 -163 1 920 714 160 74 30 chr9 43973138 43973273 -80102899 - B1_Mur2 SINE Alu 0 149 9 1 920 717 211 58 26 chr9 43973275 43973431 -80102741 + B3 SINE B2 45 205 -11 1 920 668 191 92 0 chr9 43973445 43973576 -80102596 + B1_Mur1 SINE Alu 1 143 -6 1 920 369 273 8 76 chr9 43973668 43973787 -80102385 - PB1D10 SINE Alu -2 115 5 1 920 268 265 145 93 chr9 43975001 43975098 -80101074 - PB1D10 SINE Alu 0 127 27 1 920 599 335 6 13 chr9 43975792 43975949 -80100223 + ID_B1 SINE B4 57 212 -12 1 920 323 318 37 18 chr9 43976601 43976710 -80099462 - B1F1 SINE Alu -36 113 3 1 920 279 0 0 0 chr9 43976727 43976758 -80099414 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 920 636 254 121 26 chr9 43976760 43976950 -80099222 - B3 SINE B2 -6 210 3 1 920 524 259 19 0 chr9 43976950 43977032 -80099140 - B1F SINE Alu -65 84 1 1 920 431 267 29 0 chr9 43977676 43977781 -80098391 - PB1D9 SINE Alu -12 108 1 1 920 254 286 18 0 chr9 43977840 43977896 -80098276 - ID4_ SINE ID -2 81 25 1 920 291 256 11 68 chr9 43977940 43978028 -80098144 - PB1D7 SINE Alu -37 83 1 1 920 499 144 0 58 chr9 43978110 43978213 -80097959 + B1_Mus2 SINE Alu 51 147 0 1 920 661 254 20 31 chr9 43978381 43978576 -80097596 + B3A SINE B2 2 194 -4 1 920 2742 195 75 250 chr9 43978708 43979997 -80096175 + RMER1B Other Other 3 1066 0 1 920 1052 106 7 0 chr9 43980007 43980148 -80096024 + B1_Mus2 SINE Alu 1 142 -5 1 920 595 142 283 0 chr9 43980236 43980349 -80095823 - B1_Mur4 SINE Alu -4 146 2 1 920 23 0 0 0 chr9 43980353 43980376 -80095796 + AT_rich Low_complexity Low_complexity 1 23 0 1 920 198 0 0 0 chr9 43980452 43980474 -80095698 + (T)n Simple_repeat Simple_repeat 1 22 0 1 920 728 145 52 37 chr9 43980477 43980613 -80095559 + B1_Mus2 SINE Alu 1 138 -9 1 920 34 0 0 0 chr9 43980626 43980660 -80095512 + AT_rich Low_complexity Low_complexity 1 34 0 1 920 437 266 31 55 chr9 43980689 43980852 -80095320 - RSINE1 SINE B4 -4 161 3 1 920 253 77 52 103 chr9 43980858 43980916 -80095256 - B2_Mm2 SINE B2 -4 191 137 1 920 289 148 0 50 chr9 43980905 43980973 -80095199 - B2_Mm2 SINE B2 -107 109 47 1 920 1259 113 11 0 chr9 43981057 43981234 -80094938 - B2_Mm1t SINE B2 -14 179 1 1 920 1430 69 11 11 chr9 43981925 43982116 -80094056 + B2_Mm2 SINE B2 2 192 -3 1 920 234 0 0 0 chr9 43982158 43982184 -80093988 + (T)n Simple_repeat Simple_repeat 1 26 0 1 920 1209 48 0 0 chr9 43982184 43982330 -80093842 - B1_Mm SINE Alu 0 147 2 1 920 656 231 68 45 chr9 43982561 43982738 -80093434 + B3A SINE B2 2 182 -16 1 920 642 182 79 0 chr9 43983126 43983252 -80092920 - B1_Mur3 SINE Alu -6 143 8 1 920 33 0 0 0 chr9 43983255 43983288 -80092884 + AT_rich Low_complexity Low_complexity 1 33 0 1 920 189 229 40 67 chr9 43983288 43983363 -80092809 - L2a LINE L2 -243 3183 3111 1 920 249 295 0 25 chr9 43984245 43984325 -80091847 - ID4 SINE ID -4 79 2 1 920 299 272 68 155 chr9 43984351 43984402 -80091770 - B1F1 SINE Alu -8 141 97 1 920 315 0 0 0 chr9 43984402 43984437 -80091735 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 920 299 272 68 155 chr9 43984437 43984464 -80091708 - B1F1 SINE Alu -53 96 79 1 920 549 154 202 8 chr9 43984464 43984588 -80091584 - B1_Mur2 SINE Alu 0 149 2 1 920 299 272 68 155 chr9 43984588 43984656 -80091516 - B1F1 SINE Alu -71 78 7 1 920 626 162 89 9 chr9 43984688 43984800 -80091372 + B1_Mur1 SINE Alu 29 149 0 1 920 711 219 140 54 chr9 43985010 43985232 -80090940 + B4 SINE B4 2 242 -50 1 920 821 115 16 8 chr9 43985268 43985391 -80090781 + B1_Mus1 SINE Alu 16 139 -9 1 920 201 74 0 0 chr9 43985403 43985430 -80090742 + (CCCCCA)n Simple_repeat Simple_repeat 5 31 0 1 920 326 172 138 0 chr9 43985464 43985522 -80090650 + PB1D9 SINE Alu 43 108 -12 1 920 181 143 29 0 chr9 43985750 43985785 -80090387 + MIR SINE MIR 85 120 -142 1 920 251 294 110 61 chr9 43985966 43986220 -80089952 + B4A SINE B4 27 291 -1 1 920 21 36 0 0 chr9 43986398 43986426 -80089746 + AT_rich Low_complexity Low_complexity 1 28 0 1 920 192 40 0 0 chr9 43986889 43986914 -80089258 + (CCCA)n Simple_repeat Simple_repeat 3 27 0 1 920 275 279 226 19 chr9 43989344 43989450 -80086722 + RSINE1 SINE B4 2 129 -36 1 920 269 314 56 56 chr9 43989884 43989992 -80086180 + PB1D10 SINE Alu 1 108 -9 1 920 983 122 7 26 chr9 43990101 43990253 -80085919 + B1_Mur3 SINE Alu 1 149 0 1 920 917 263 9 0 chr9 43990463 43990676 -80085496 - B3 SINE B2 -1 215 1 1 920 216 312 23 91 chr9 43990874 43990962 -80085210 - ID4 SINE ID 0 83 2 1 920 330 298 81 12 chr9 43991462 43991622 -80084550 - L1MD3 LINE L1 -294 7701 7531 1 920 306 212 225 0 chr9 43991788 43991868 -80084304 + PB1D10 SINE Alu 13 110 -7 1 920 728 117 108 8 chr9 43992066 43992195 -80083977 - B1_Mus1 SINE Alu -1 147 6 1 920 1175 68 0 20 chr9 43993165 43993315 -80082857 - B1_Mus2 SINE Alu 0 147 1 1 920 504 287 58 32 chr9 43993320 43993475 -80082697 - B3A SINE B2 0 198 40 1 920 243 0 0 0 chr9 43993483 43993510 -80082662 + (A)n Simple_repeat Simple_repeat 1 27 0 1 920 867 153 13 40 chr9 43993987 43994137 -80082035 - B1_Mus2 SINE Alu -1 146 1 1 920 1158 196 34 0 chr9 43994203 43994412 -80081760 - B3 SINE B2 0 216 1 1 920 699 147 56 58 chr9 43994527 43994680 -80081492 + B1_Mus1 SINE Alu 1 148 0 1 920 276 299 26 13 chr9 43994689 43994767 -80081405 + B3 SINE B2 129 207 -9 1 920 648 275 152 17 chr9 43994927 43995164 -80081008 - B4 SINE B4 0 292 24 1 920 192 125 0 0 chr9 43995181 43995213 -80080959 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 920 306 253 89 0 chr9 43995285 43995364 -80080808 - B1F SINE Alu -1 148 63 1 920 354 154 0 0 chr9 43995313 43995365 -80080807 - ID_B1 SINE B4 -33 191 140 1 920 337 219 57 0 chr9 43995368 43995448 -80080724 - ID4_ SINE ID -65 87 1 1 920 629 209 71 50 chr9 43996916 43997057 -80079115 + B1_Mur4 SINE Alu 7 150 0 1 920 219 281 0 0 chr9 43997062 43997079 -80079093 + polypurine Low_complexity Low_complexity 2 18 0 1 920 795 144 83 0 chr9 43997079 43997204 -80078968 + B1_Mus1 SINE Alu 1 136 -12 1 920 495 0 0 0 chr9 43997204 43997259 -80078913 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 920 219 281 0 0 chr9 43997265 43997304 -80078868 + polypurine Low_complexity Low_complexity 19 57 0 1 920 668 195 20 18 chr9 43997304 43997455 -80078717 + B3 SINE B2 28 179 -14 1 920 217 323 108 51 chr9 43997543 43997719 -80078453 + B2_Mm1a SINE B2 1 186 -7 1 920 737 212 212 0 chr9 43997784 43997954 -80078218 - B3 SINE B2 0 216 11 1 920 1138 227 0 9 chr9 43997956 43998174 -80077998 - B3 SINE B2 0 216 1 1 920 1042 119 200 0 chr9 43998220 43998405 -80077767 - URR1A DNA MER1_type 0 226 5 1 920 480 306 52 93 chr9 43998749 43998943 -80077229 + Charlie1a DNA MER1_type 38 229 -1226 1 920 207 0 0 0 chr9 43998943 43998966 -80077206 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 920 1170 29 0 7 chr9 43998966 43999104 -80077068 - B1_Mus2 SINE Alu -9 138 2 1 920 480 306 52 93 chr9 43999104 43999218 -80076954 + Charlie1a DNA MER1_type 230 333 -1122 1 920 239 317 0 0 chr9 43999170 43999230 -80076942 + RSINE1 SINE B4 10 69 -96 1 920 359 41 0 20 chr9 43999270 43999320 -80076852 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 920 261 280 117 78 chr9 43999325 43999530 -80076642 + Charlie1a DNA MER1_type 273 485 -970 1 920 338 304 83 60 chr9 43999678 43999811 -80076361 - ID_B1 SINE B4 0 224 89 1 920 535 270 55 0 chr9 44000006 44000169 -80076003 - L1MB4 LINE L1 -207 5973 5802 1 920 246 279 103 41 chr9 44000182 44000279 -80075893 + RSINE1 SINE B4 4 106 -59 2 920 585 232 66 25 chr9 44000477 44000743 -80075429 - L1MA5A LINE L1 -371 5929 5660 3 920 1125 255 83 28 chr9 44000774 44001170 -80075002 - L1MB4 LINE L1 -394 5786 5369 1 920 228 148 0 47 chr9 44001258 44001322 -80074850 + CT-rich Low_complexity Low_complexity 1 61 0 4 920 518 204 65 0 chr9 44001330 44001438 -80074734 - PB1D9 SINE Alu -5 115 1 5 920 1055 22 82 7 chr9 44001628 44001763 -80074409 - B1_Mus2 SINE Alu 0 147 3 6 920 563 189 71 18 chr9 44001899 44002012 -80074160 + PB1D9 SINE Alu 2 120 0 7 920 726 192 0 8 chr9 44002754 44002875 -80073297 + PB1D9 SINE Alu 1 120 0 8 920 522 191 25 42 chr9 44003415 44003535 -80072637 + B1_Mur4 SINE Alu 17 134 -16 9 920 271 287 152 24 chr9 44003561 44003686 -80072486 - B1F SINE Alu -8 141 1 1 920 282 256 70 104 chr9 44003721 44003922 -80072250 + L1MB5 LINE L1 5139 5332 -814 1 920 227 179 51 2 chr9 44004000 44004061 -80072111 + PB1 SINE Alu 65 148 -1 1 920 347 209 190 52 chr9 44004098 44004214 -80071958 + ID_B1 SINE B4 93 224 0 1 920 470 234 155 17 chr9 44004233 44004407 -80071765 + B3A SINE B2 1 198 0 1 920 825 233 238 19 chr9 44004412 44004836 -80071336 + L1MB5 LINE L1 5313 5829 -345 1 920 360 320 38 23 chr9 44004839 44004970 -80071202 + B1F SINE Alu 6 138 -11 1 920 614 274 75 78 chr9 44004991 44005311 -80070861 + L1MB5 LINE L1 5815 6133 -51 1 920 352 221 0 0 chr9 44005361 44005429 -80070743 + B1_Mur3 SINE Alu 1 68 -81 1 920 1015 206 81 140 chr9 44005405 44005463 -80070709 - MTD LTR MaLR -42 377 329 1 920 633 211 163 59 chr9 44005463 44005665 -80070507 + URR1B DNA MER1_type 1 223 -2 1 920 1015 206 81 140 chr9 44005665 44005978 -80070194 - MTD LTR MaLR -91 328 28 1 920 899 171 115 35 chr9 44006050 44006250 -80069922 + B3 SINE B2 1 216 0 1 920 779 203 76 43 chr9 44006563 44006774 -80069398 + ID_B1 SINE B4 1 218 -6 2 920 198 293 35 35 chr9 44006849 44006934 -80069238 - MIR SINE MIR -176 86 2 2 920 1954 151 20 17 chr9 44006946 44007304 -80068868 + ORR1B2 LTR MaLR 1 359 -8 2 920 439 300 11 130 chr9 44007396 44007580 -80068592 + RSINE1 SINE B4 1 162 -3 2 920 803 115 5 229 chr9 44007943 44008157 -80068015 - URR1A DNA MER1_type 0 226 61 2 920 215 270 63 0 chr9 44008366 44008429 -80067743 + ID4 SINE ID 12 78 -5 2 920 390 291 0 0 chr9 44008489 44008575 -80067597 + RSINE1 SINE B4 11 96 -69 2 920 434 18 18 0 chr9 44008593 44008648 -80067524 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 920 338 20 0 89 chr9 44009695 44009751 -80066421 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 2 920 1227 32 0 0 chr9 44009752 44009906 -80066266 - B2_Mm1a SINE B2 -38 155 2 2 920 1130 94 18 6 chr9 44009906 44010077 -80066095 - B2_Mm2 SINE B2 -20 175 3 3 920 1011 184 75 0 chr9 44010164 44010365 -80065807 - B3 SINE B2 0 216 1 3 920 232 211 111 14 chr9 44010389 44010461 -80065711 - ID_B1 SINE B4 -55 169 91 3 920 236 290 52 30 chr9 44010743 44010809 -80065363 + L1M5 LINE L1 5008 5080 -1066 3 920 212 0 0 35 chr9 44010809 44010838 -80065334 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 3 920 236 290 52 30 chr9 44010838 44010906 -80065266 + L1M5 LINE L1 5081 5144 -1002 3 920 245 321 73 9 chr9 44010961 44011071 -80065101 + PB1D10 SINE Alu 1 117 0 3 920 513 207 101 22 chr9 44011492 44011630 -80064542 + B1_Mur2 SINE Alu 1 149 0 3 920 22 0 0 0 chr9 44011643 44011665 -80064507 + AT_rich Low_complexity Low_complexity 1 22 0 3 920 813 154 0 57 chr9 44011746 44011904 -80064268 + B1_Mur4 SINE Alu 2 150 0 3 920 1168 82 0 0 chr9 44011927 44012074 -80064098 + B1_Mus1 SINE Alu 2 148 0 3 920 186 71 0 0 chr9 44012076 44012104 -80064068 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 920 245 298 115 8 chr9 44012177 44012299 -80063873 + L1M5 LINE L1 5763 5897 -276 3 920 3265 128 125 0 chr9 44012307 44012876 -80063296 + RMER19A LTR ERVK 3 642 -95 4 920 1051 64 0 0 chr9 44012894 44013034 -80063138 - B2_Mm2 SINE B2 -54 141 2 4 920 789 79 0 17 chr9 44013034 44013142 -80063030 + RMER19A LTR ERVK 632 737 0 4 920 217 152 43 21 chr9 44013194 44013241 -80062931 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 4 920 489 279 66 0 chr9 44013273 44013395 -80062777 + RSINE1 SINE B4 3 132 -33 4 920 195 69 0 0 chr9 44013446 44013475 -80062697 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 920 1080 210 377 24 chr9 44013497 44013785 -80062387 + RMER15 LTR ERVL 74 464 -111 4 920 996 197 39 24 chr9 44013785 44013993 -80062179 + B3 SINE B2 1 211 -5 4 920 1080 219 114 34 chr9 44013993 44014079 -80062093 + RMER15 LTR ERVL 465 557 -18 4 920 256 306 66 0 chr9 44014142 44014263 -80061909 - L1MEg LINE L1 -4919 1165 1037 4 920 480 273 33 73 chr9 44014391 44014541 -80061631 - RSINE1 SINE B4 -13 152 9 4 920 852 91 66 0 chr9 44014572 44014693 -80061479 - B1_Mus1 SINE Alu -19 129 1 5 920 1210 120 128 15 chr9 44014929 44015132 -80061040 - URR1A DNA MER1_type 0 226 1 5 920 243 0 0 0 chr9 44015508 44015535 -80060637 + (CAAAC)n Simple_repeat Simple_repeat 4 30 0 5 920 514 202 55 0 chr9 44015632 44015741 -80060431 + PB1D10 SINE Alu 3 117 0 5 920 216 255 58 117 chr9 44016005 44016125 -80060047 + PB1D10 SINE Alu 2 114 -3 5 920 573 225 0 16 chr9 44016339 44016461 -80059711 - PB1D9 SINE Alu 0 120 1 5 920 1144 49 21 0 chr9 44016570 44016714 -80059458 + B1_Mus2 SINE Alu 1 147 0 5 920 228 174 0 0 chr9 44016933 44016979 -80059193 + L1MA8 LINE L1 6244 6289 -2 5 920 246 330 37 65 chr9 44017057 44017164 -80059008 - ID_B1 SINE B4 -114 110 7 5 920 180 262 148 12 chr9 44017901 44017982 -80058190 + MIRb SINE MIR 95 186 -82 5 920 233 345 115 0 chr9 44018082 44018195 -80057977 + PB1 SINE Alu 1 126 -1 6 920 198 0 0 0 chr9 44018196 44018218 -80057954 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 920 704 163 103 7 chr9 44018586 44018722 -80057450 + B1_Mur2 SINE Alu 1 149 0 6 920 810 231 0 32 chr9 44018807 44018995 -80057177 + B3 SINE B2 10 191 -25 6 920 660 223 121 39 chr9 44019062 44019244 -80056928 + B3A SINE B2 2 198 0 6 920 356 277 174 7 chr9 44019312 44019450 -80056722 + B3A SINE B2 8 168 -30 6 920 1286 93 16 21 chr9 44019468 44019655 -80056517 + B2_Mm2 SINE B2 2 187 -8 6 920 1263 34 0 0 chr9 44019662 44019809 -80056363 + B1_Mus2 SINE Alu 1 147 0 6 920 523 62 75 85 chr9 44019931 44020037 -80056135 - B1_Mus2 SINE Alu 0 147 43 6 920 23 33 0 0 chr9 44020040 44020070 -80056102 + AT_rich Low_complexity Low_complexity 1 30 0 6 920 405 0 0 0 chr9 44020184 44020229 -80055943 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 920 449 239 90 18 chr9 44020229 44020331 -80055841 - PB1D7 SINE Alu -9 111 1 7 920 842 261 10 0 chr9 44020395 44020590 -80055582 - B3 SINE B2 -19 197 1 7 920 795 126 327 0 chr9 44020826 44020985 -80055187 - B3 SINE B2 -4 212 2 7 920 714 135 79 0 chr9 44021135 44021261 -80054911 + B1_Mur3 SINE Alu 10 145 -4 7 920 550 241 20 52 chr9 44021319 44021472 -80054700 + B1F1 SINE Alu 2 149 0 7 920 312 255 118 46 chr9 44021802 44021954 -80054218 + RSINE1 SINE B4 2 164 -1 7 920 264 122 0 0 chr9 44021959 44022000 -80054172 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 920 4431 14 2 12 chr9 44022381 44022879 -80053293 - MT2_Mm LTR ERVL 0 493 1 7 920 321 0 0 0 chr9 44022879 44022917 -80053255 - MERVL-int LTR ERVL 0 5485 5448 7 920 362 167 46 35 chr9 44022917 44023004 -80053168 - ORR1A3-int LTR MaLR -1323 640 553 7 920 48455 15 6 0 chr9 44023004 44028330 -80047842 - MERVL-int LTR ERVL -125 5360 1 7 920 4431 14 2 12 chr9 44028330 44028828 -80047344 - MT2_Mm LTR ERVL 0 493 1 7 920 649 260 77 19 chr9 44028838 44029046 -80047126 - B4 SINE B4 -72 220 1 8 920 376 309 23 74 chr9 44029098 44029273 -80046899 + B4 SINE B4 1 166 -126 8 920 1505 35 17 0 chr9 44029536 44029710 -80046462 + B2_Mm2 SINE B2 2 178 -17 8 920 284 228 37 65 chr9 44029859 44029967 -80046205 + PB1D7 SINE Alu 13 120 0 8 920 402 286 166 6 chr9 44029984 44030153 -80046019 + B3A SINE B2 2 197 -1 8 920 3295 101 0 0 chr9 44030390 44030826 -80045346 + RLTR10C LTR ERVK 1 436 0 8 920 846 165 199 28 chr9 44031534 44031715 -80044457 - B3 SINE B2 -4 212 1 8 920 637 174 66 0 chr9 44031751 44031872 -80044300 - B1_Mur2 SINE Alu 0 149 21 8 920 360 0 0 0 chr9 44031872 44031912 -80044260 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 920 242 338 27 0 chr9 44031989 44032063 -80044109 + ID_B1 SINE B4 84 159 -65 8 920 287 274 0 16 chr9 44032165 44032228 -80043944 + B1_Mus2 SINE Alu 1 62 -85 9 920 964 127 15 0 chr9 44032354 44032488 -80043684 + B1_Mur3 SINE Alu 2 137 -12 9 920 288 253 52 21 chr9 44032637 44032734 -80043438 + MER5A1 DNA MER1_type 2 101 -65 9 920 744 219 106 142 chr9 44032879 44033182 -80042990 + B4 SINE B4 1 292 0 9 920 303 279 60 43 chr9 44033721 44033837 -80042335 + PB1D7 SINE Alu 3 120 0 9 920 856 242 88 0 chr9 44034731 44034925 -80041247 - B3 SINE B2 -4 212 2 9 920 285 330 18 0 chr9 44035071 44035180 -80040992 + PB1D7 SINE Alu 3 113 -7 9 920 587 211 60 0 chr9 44035218 44035351 -80040821 + B1_Mm SINE Alu 2 142 -5 9 920 1088 56 0 53 chr9 44035482 44035633 -80040539 + B1_Mm SINE Alu 4 146 -1 9 920 441 236 72 66 chr9 44035825 44035969 -80040203 + B1F1 SINE Alu 1 143 -5 9 920 330 212 202 0 chr9 44037113 44037212 -80038960 + PB1D9 SINE Alu 2 120 0 1 920 314 275 135 21 chr9 44037564 44037705 -80038467 - RSINE1 SINE B4 -7 158 2 1 920 272 200 15 15 chr9 44037917 44037983 -80038189 + MER58C DNA MER1_type 148 213 -2 1 920 658 255 58 24 chr9 44038418 44038623 -80037549 + B3 SINE B2 1 212 -4 1 920 438 253 0 0 chr9 44038680 44038775 -80037397 + RSINE1 SINE B4 71 165 0 1 920 1371 91 27 0 chr9 44038788 44038974 -80037198 - B2_Mm1t SINE B2 -1 192 2 1 920 300 115 0 0 chr9 44038999 44039019 -80037153 + (A)n Simple_repeat Simple_repeat 1 20 0 1 920 1183 75 0 0 chr9 44039019 44039166 -80037006 + B1_Mus2 SINE Alu 1 147 0 1 920 300 115 0 0 chr9 44039166 44039197 -80036975 + (A)n Simple_repeat Simple_repeat 1 31 0 1 920 303 286 35 12 chr9 44039845 44039930 -80036242 + PB1D7 SINE Alu 32 118 -2 1 920 566 208 0 0 chr9 44039933 44040034 -80036138 - Lx4A LINE L1 -694 6364 6264 1 14 598 175 128 35 chr9 44040037 44040209 -80035963 + Lx4A LINE L1 6871 7058 0 1 921 599 241 175 0 chr9 44040260 44040426 -80035746 + B3 SINE B2 1 195 -21 1 921 192 237 203 73 chr9 44040661 44040784 -80035388 - MIRb SINE MIR -15 253 115 1 921 22 70 0 0 chr9 44041728 44041771 -80034401 + GC_rich Low_complexity Low_complexity 1 43 0 1 921 211 264 41 8 chr9 44042102 44042224 -80033948 + (CG)n Simple_repeat Simple_repeat 2 127 0 1 921 360 253 13 0 chr9 44042600 44042679 -80033493 - ID4_ SINE ID -2 81 2 1 921 672 142 0 0 chr9 44042687 44042793 -80033379 - B1_Mur2 SINE Alu -20 129 24 1 921 1248 41 0 0 chr9 44043371 44043518 -80032654 - B1_Mus2 SINE Alu 0 147 1 1 921 848 181 21 0 chr9 44043627 44043771 -80032401 - B1F2 SINE Alu 0 149 3 1 921 805 114 53 0 chr9 44044228 44044360 -80031812 + B1_Mur4 SINE Alu 3 141 -9 1 921 25 0 0 0 chr9 44044361 44044386 -80031786 + AT_rich Low_complexity Low_complexity 1 25 0 1 921 21 0 0 0 chr9 44045041 44045062 -80031110 + AT_rich Low_complexity Low_complexity 1 21 0 1 921 194 303 34 68 chr9 44045125 44045167 -80031005 + L2c LINE L2 3029 3071 -316 1 921 485 32 16 0 chr9 44045167 44045230 -80030942 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 921 194 303 34 68 chr9 44045230 44045304 -80030868 + L2c LINE L2 3072 3141 -246 1 921 225 297 22 11 chr9 44045644 44045736 -80030436 - PB1 SINE Alu -2 125 33 1 921 906 186 145 0 chr9 44045770 44045963 -80030209 + URR1B DNA MER1_type 1 221 -4 1 921 295 228 43 26 chr9 44046099 44046214 -80029958 + PB1 SINE Alu 9 148 -1 1 921 539 266 23 8 chr9 44046254 44046383 -80029789 + RSINE1 SINE B4 2 132 -33 1 921 300 211 14 0 chr9 44046426 44046502 -80029670 - B3A SINE B2 -136 80 1 1 921 180 0 0 0 chr9 44046510 44046530 -80029642 + (A)n Simple_repeat Simple_repeat 1 20 0 1 921 697 222 5 63 chr9 44047095 44047302 -80028870 + B3A SINE B2 1 195 -3 1 921 224 30 0 29 chr9 44048093 44048127 -80028045 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 921 1139 88 64 12 chr9 44048134 44048306 -80027866 - B2_Mm2 SINE B2 -14 181 1 1 921 318 206 135 19 chr9 44049275 44049379 -80026793 - PB1D10 SINE Alu 0 117 2 1 921 2058 143 32 0 chr9 44049810 44050152 -80026020 - MTC LTR MaLR -1 420 68 1 921 654 104 0 0 chr9 44050154 44050250 -80025922 + (TTCC)n Simple_repeat Simple_repeat 2 97 0 1 921 1257 21 7 0 chr9 44050265 44050410 -80025762 - B1_Mm SINE Alu -1 146 1 1 921 1274 78 44 22 chr9 44050415 44050598 -80025574 - B2_Mm2 SINE B2 -6 189 3 1 921 471 110 0 0 chr9 44050599 44050672 -80025500 - MTC LTR MaLR -342 79 7 1 921 861 194 50 56 chr9 44051947 44052177 -80023995 + B3 SINE B2 7 215 -1 1 921 1104 101 0 0 chr9 44052441 44052589 -80023583 + B1_Mus1 SINE Alu 1 148 0 1 921 519 216 0 0 chr9 44052622 44052724 -80023448 - B3 SINE B2 -78 138 37 1 921 417 238 0 0 chr9 44052753 44052837 -80023335 - PB1D7 SINE Alu -32 88 5 1 921 537 215 170 20 chr9 44053066 44053213 -80022959 + B3 SINE B2 1 169 -47 1 921 291 114 0 0 chr9 44053214 44053258 -80022914 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 921 330 132 0 0 chr9 44053258 44053311 -80022861 + (GGA)n Simple_repeat Simple_repeat 2 54 0 1 921 28 0 0 0 chr9 44053333 44053361 -80022811 + AT_rich Low_complexity Low_complexity 1 28 0 1 921 611 242 8 0 chr9 44053387 44053519 -80022653 + ID_B1 SINE B4 92 224 0 1 921 377 226 104 0 chr9 44054065 44054171 -80022001 + B1F SINE Alu 22 138 -11 1 921 204 271 0 0 chr9 44054310 44054358 -80021814 + G-rich Low_complexity Low_complexity 3 50 0 1 921 320 328 40 0 chr9 44054364 44054489 -80021683 + ID_B1 SINE B4 93 222 -2 1 921 192 77 0 0 chr9 44054552 44054578 -80021594 + (CAGAGA)n Simple_repeat Simple_repeat 2 27 0 1 921 530 232 27 0 chr9 44054584 44054696 -80021476 + PB1D10 SINE Alu 1 115 -2 1 921 183 186 0 0 chr9 44054696 44054739 -80021433 + GA-rich Low_complexity Low_complexity 1 43 0 1 921 954 129 14 0 chr9 44055204 44055344 -80020828 + B1_Mm SINE Alu 5 146 -1 1 921 562 324 7 0 chr9 44055438 44055586 -80020586 - RSINE1 SINE B4 -13 152 4 1 921 531 0 0 0 chr9 44059235 44059294 -80016878 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 921 242 269 54 71 chr9 44059354 44059466 -80016706 - MT2_Mm LTR ERVL -227 266 157 1 921 203 156 0 0 chr9 44060274 44060306 -80015866 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 921 267 54 0 0 chr9 44060318 44060355 -80015817 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 921 198 125 0 72 chr9 44060426 44060495 -80015677 + (CACCC)n Simple_repeat Simple_repeat 3 66 0 1 921 417 167 12 12 chr9 44060496 44060581 -80015591 - B2_Mm2 SINE B2 -109 86 2 1 921 367 213 53 13 chr9 44061761 44061837 -80014335 + ID4_ SINE ID 5 83 0 1 921 558 228 8 38 chr9 44062795 44062927 -80013245 - RSINE1 SINE B4 -36 129 2 1 921 569 235 14 14 chr9 44063187 44063201 -80012971 - B1_Mus2 SINE Alu 0 147 135 1 921 297 0 0 0 chr9 44063201 44063234 -80012938 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 921 569 235 14 14 chr9 44063234 44063357 -80012815 - B1_Mus2 SINE Alu -13 134 10 1 921 591 219 32 0 chr9 44064107 44064230 -80011942 - B1F SINE Alu -5 144 18 1 921 725 266 38 69 chr9 44065372 44065634 -80010538 - MER2 DNA MER2_type 0 345 92 1 921 336 284 0 0 chr9 44065644 44065718 -80010454 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 1 921 1172 202 14 23 chr9 44065751 44065969 -80010203 - B3 SINE B2 0 216 1 1 921 679 258 58 26 chr9 44065987 44066178 -80009994 - B3A SINE B2 0 198 2 1 921 198 71 0 0 chr9 44066215 44066243 -80009929 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1 921 762 167 64 14 chr9 44066255 44066395 -80009777 + B1_Mus1 SINE Alu 2 148 0 1 921 353 310 0 10 chr9 44066396 44066497 -80009675 - PB1D10 SINE Alu -13 104 5 1 921 246 194 0 0 chr9 44066532 44066594 -80009578 + CT-rich Low_complexity Low_complexity 3 64 0 1 921 532 241 29 22 chr9 44066598 44066734 -80009438 - ID_B1 SINE B4 -6 218 82 1 921 212 253 155 21 chr9 44067040 44067137 -80009035 + L2c LINE L2 3061 3170 -217 1 921 310 266 12 12 chr9 44067542 44067622 -80008550 + ID4 SINE ID 4 83 0 1 921 1170 88 0 0 chr9 44067627 44067775 -80008397 + B1_Mus1 SINE Alu 1 148 0 1 921 203 194 0 0 chr9 44067776 44067812 -80008360 + GA-rich Low_complexity Low_complexity 2 37 0 1 921 378 42 0 0 chr9 44068043 44068091 -80008081 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 921 710 172 7 36 chr9 44068204 44068343 -80007829 - B1_Mur1 SINE Alu -2 147 13 1 921 292 364 0 29 chr9 44068353 44068455 -80007717 - RSINE1 SINE B4 -65 100 2 1 921 370 278 86 15 chr9 44068511 44068680 -80007492 - MIR SINE MIR -69 193 20 1 921 1208 68 0 0 chr9 44068705 44068852 -80007320 - B1_Mus1 SINE Alu 0 148 2 1 921 196 254 45 45 chr9 44069001 44069067 -80007105 + MIRb SINE MIR 42 107 -161 1 921 289 324 44 26 chr9 44069129 44069243 -80006929 - B4A SINE B4 -4 288 173 1 921 348 241 0 12 chr9 44069287 44069371 -80006801 - B4 SINE B4 -209 83 1 1 921 439 221 0 0 chr9 44069744 44069821 -80006351 + ID4 SINE ID 5 81 -2 1 921 333 0 0 0 chr9 44070148 44070185 -80005987 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 921 415 179 0 0 chr9 44071266 44071333 -80004839 + B1_Mur3 SINE Alu 2 68 -81 1 921 872 90 0 29 chr9 44071312 44071450 -80004722 - B1_Mus2 SINE Alu -12 135 2 1 921 253 306 0 14 chr9 44071466 44071539 -80004633 - MIRb SINE MIR -11 257 186 1 921 244 366 127 0 chr9 44073477 44073611 -80002561 + L2a LINE L2 3275 3425 -1 1 921 464 285 86 0 chr9 44073970 44074121 -80002051 + RSINE1 SINE B4 2 165 0 1 921 188 182 0 22 chr9 44074232 44074277 -80001895 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 921 513 199 6 12 chr9 44074296 44074469 -80001703 + (CA)n Simple_repeat Simple_repeat 2 173 0 1 921 236 312 23 68 chr9 44076358 44076540 -79999632 - MIRc SINE MIR -82 194 20 1 921 1230 174 15 0 chr9 44077270 44077466 -79998706 + B3 SINE B2 3 201 -15 1 921 261 83 0 0 chr9 44077466 44077502 -79998670 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1 921 1177 70 0 0 chr9 44077504 44077646 -79998526 - B1_Mus1 SINE Alu -6 142 1 1 921 27 0 0 0 chr9 44077662 44077689 -79998483 + AT_rich Low_complexity Low_complexity 1 27 0 1 921 859 181 7 14 chr9 44077693 44077826 -79998346 + B1_Mus1 SINE Alu 3 136 -12 2 921 762 69 0 0 chr9 44077826 44077927 -79998245 + (GAAAA)n Simple_repeat Simple_repeat 1 101 0 2 921 249 83 0 0 chr9 44077927 44077962 -79998210 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 2 921 859 181 7 14 chr9 44077962 44077973 -79998199 + B1_Mus1 SINE Alu 137 146 -2 2 921 522 0 0 0 chr9 44078392 44078450 -79997722 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 921 235 248 87 43 chr9 44078518 44078634 -79997538 + MIRc SINE MIR 108 233 -35 2 921 311 355 40 45 chr9 44078746 44078847 -79997325 + ID_B1 SINE B4 1 223 -1 2 921 320 300 57 24 chr9 44078847 44078970 -79997202 + B1F SINE Alu 23 149 0 2 921 272 200 200 0 chr9 44079025 44079095 -79997077 + B1F SINE Alu 15 98 -51 2 921 614 322 42 19 chr9 44079103 44079318 -79996854 + ID_B1 SINE B4 5 224 0 2 921 1229 48 0 0 chr9 44079547 44079693 -79996479 + B1_Mm SINE Alu 2 147 0 2 921 1545 72 0 10 chr9 44080040 44080236 -79995936 + B2_Mm2 SINE B2 1 194 -1 2 921 1179 97 128 0 chr9 44080314 44080509 -79995663 + URR1A DNA MER1_type 7 226 0 2 921 769 251 32 42 chr9 44080744 44080984 -79995188 - ID_B1 SINE B4 -44 248 4 2 921 394 70 14 14 chr9 44083788 44083860 -79992312 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 921 440 255 36 18 chr9 44084231 44084343 -79991829 + B1F SINE Alu 29 142 -7 2 921 260 53 0 26 chr9 44084358 44084397 -79991775 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 921 549 259 7 7 chr9 44084546 44084682 -79991490 - ID_B1 SINE B4 -5 219 84 2 921 323 311 6 62 chr9 44084682 44084706 -79991466 + YREP_Mm Unknown Unknown 182 332 -1480 2 921 640 234 44 31 chr9 44084816 44084975 -79991197 + RSINE1 SINE B4 5 165 0 2 921 675 165 109 8 chr9 44085002 44085130 -79991042 + B1_Mm SINE Alu 2 142 -5 2 921 333 227 0 13 chr9 44085335 44085411 -79990761 - PB1D7 SINE Alu -1 119 45 2 921 1761 202 80 12 chr9 44087862 44088251 -79987921 + MTD LTR MaLR 1 405 -14 2 921 189 286 0 0 chr9 44088313 44088362 -79987810 - L2b LINE L2 -9 3366 3318 2 921 203 346 54 23 chr9 44088710 44088840 -79987332 - L2b LINE L2 -543 2876 2743 2 921 235 288 41 83 chr9 44090079 44090200 -79985972 + B4A SINE B4 5 120 -172 2 921 330 210 36 36 chr9 44090189 44090273 -79985899 + B1F SINE Alu 12 95 -54 2 921 531 0 0 0 chr9 44090281 44090340 -79985832 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 921 419 294 51 41 chr9 44090340 44090535 -79985637 + B3A SINE B2 2 198 0 2 921 246 170 19 19 chr9 44090595 44090649 -79985523 + B4 SINE B4 179 232 -60 2 921 597 137 0 0 chr9 44090651 44090768 -79985404 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 2 921 227 390 0 0 chr9 44090768 44090827 -79985345 + B4 SINE B4 224 282 -10 2 921 222 37 0 0 chr9 44090831 44090858 -79985314 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 921 450 0 0 0 chr9 44090864 44090914 -79985258 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 921 1254 21 7 0 chr9 44091016 44091159 -79985013 - B1_Mus1 SINE Alu 0 148 5 2 921 703 236 112 10 chr9 44091701 44091898 -79984274 + MIRb SINE MIR 20 236 -32 2 921 265 351 35 17 chr9 44091929 44092045 -79984127 - MIRm SINE MIR -2 274 157 2 921 205 330 65 52 chr9 44091955 44092207 -79983965 - L2b LINE L2 -12 3375 3117 2 921 1235 35 0 0 chr9 44093082 44093225 -79982947 - B1_Mus2 SINE Alu 0 147 5 2 921 520 248 26 0 chr9 44093259 44093372 -79982800 - PB1D10 SINE Alu 0 117 2 2 921 419 228 25 0 chr9 44093430 44093509 -79982663 + ID4_ SINE ID 3 83 0 2 921 1664 26 5 0 chr9 44093518 44093708 -79982464 + B2_Mm1a SINE B2 2 192 -1 2 921 675 0 0 0 chr9 44094272 44094347 -79981825 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 921 303 28 0 0 chr9 44094347 44094382 -79981790 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 921 374 296 30 10 chr9 44094611 44094761 -79981411 + MIRc SINE MIR 15 170 -98 2 921 702 104 37 0 chr9 44094923 44095086 -79981086 + (GA)n Simple_repeat Simple_repeat 2 170 0 2 921 521 198 0 0 chr9 44097809 44097905 -79978267 - B1_Mur1 SINE Alu -1 148 53 2 921 200 368 55 14 chr9 44097905 44098051 -79978121 - MIR SINE MIR -95 167 16 2 921 230 231 70 61 chr9 44098220 44098243 -79977929 - L1MA5A LINE L1 -71 6229 6209 2 921 2062 122 32 157 chr9 44098243 44098682 -79977490 - ORR1C2 LTR MaLR 0 384 1 2 921 263 241 76 49 chr9 44098682 44098800 -79977372 - L1MA5A LINE L1 -92 6208 6084 2 921 375 245 67 19 chr9 44099246 44099350 -79976822 - MER5A DNA MER1_type 0 189 81 2 921 1181 76 0 0 chr9 44100017 44100161 -79976011 - B1_Mus1 SINE Alu 0 148 5 2 921 451 155 369 0 chr9 44100414 44100517 -79975655 - B1_Mus2 SINE Alu -2 145 5 2 921 217 250 21 0 chr9 44100540 44100588 -79975584 - ID4 SINE ID -34 49 1 2 921 1201 192 5 32 chr9 44100666 44100887 -79975285 - B3 SINE B2 0 216 2 2 921 1104 190 124 122 chr9 44100900 44101278 -79974894 - MTE2a LTR MaLR 0 379 1 2 921 221 65 0 0 chr9 44101408 44101439 -79974733 + B2_Mm2 SINE B2 43 73 -122 2 921 219 352 103 43 chr9 44101757 44101783 -79974389 - B4 SINE B4 -44 248 171 2 921 526 205 115 0 chr9 44101783 44101905 -79974267 - B1_Mur3 SINE Alu -7 142 7 2 921 219 352 103 43 chr9 44101905 44101941 -79974231 - B4 SINE B4 -44 170 54 2 921 254 282 89 18 chr9 44101941 44102053 -79974119 + B1F1 SINE Alu 1 120 0 2 921 755 196 30 0 chr9 44102084 44102217 -79973955 - B1_Mur4 SINE Alu -13 137 1 2 921 349 263 13 0 chr9 44102499 44102575 -79973597 + B4A SINE B4 9 85 -207 2 921 716 172 29 22 chr9 44102708 44102845 -79973327 - B1_Mus1 SINE Alu 0 148 11 2 921 496 277 31 43 chr9 44102845 44102869 -79973303 - ID_B1 SINE B4 0 223 65 2 921 1285 86 48 5 chr9 44102886 44103073 -79973099 + B2_Mm2 SINE B2 1 195 0 2 921 686 261 103 0 chr9 44103123 44103307 -79972865 + B3 SINE B2 1 203 -13 2 921 1276 69 21 74 chr9 44104828 44104871 -79971301 + B2_Mm2 SINE B2 3 35 -160 2 921 1635 42 0 0 chr9 44104871 44105064 -79971108 - B2_Mm1a SINE B2 0 193 1 2 921 1276 69 21 74 chr9 44105064 44105209 -79970963 + B2_Mm2 SINE B2 36 181 -14 2 921 431 57 0 46 chr9 44105237 44105348 -79970824 + B2_Mm2 SINE B2 47 187 -8 2 921 333 214 11 67 chr9 44105549 44105562 -79970610 + MT2B LTR ERVL 151 158 -443 2 921 401 146 83 24 chr9 44105562 44105646 -79970526 + B1_Mur3 SINE Alu 1 89 -60 2 921 222 259 0 17 chr9 44105644 44105703 -79970469 + B4A SINE B4 26 83 -209 2 921 855 201 32 28 chr9 44106587 44106791 -79969381 + MIRb SINE MIR 15 221 -47 2 921 1061 63 0 14 chr9 44108028 44108173 -79967999 - B1_Mus1 SINE Alu 0 148 6 2 921 234 0 0 0 chr9 44108343 44108369 -79967803 + (T)n Simple_repeat Simple_repeat 1 26 0 2 921 1214 74 0 0 chr9 44108369 44108517 -79967655 - B1_Mus1 SINE Alu 0 148 1 2 921 259 242 0 61 chr9 44108519 44108585 -79967587 + PB1D7 SINE Alu 59 120 0 2 921 252 307 136 0 chr9 44108839 44108927 -79967245 + ID_B1 SINE B4 93 192 -32 2 921 333 311 11 0 chr9 44109053 44109161 -79967011 + B1F SINE Alu 7 119 -1 2 921 684 246 107 0 chr9 44109168 44109355 -79966817 + B3 SINE B2 10 216 0 2 921 486 254 6 123 chr9 44109394 44109548 -79966624 + B1_Mur1 SINE Alu 2 137 -12 2 921 198 0 0 0 chr9 44109548 44109570 -79966602 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 2 921 437 262 99 7 chr9 44109597 44109739 -79966433 + RSINE1 SINE B4 11 165 0 2 921 791 190 99 35 chr9 44110039 44110241 -79965931 + B3 SINE B2 2 216 0 2 921 908 171 7 0 chr9 44110243 44110389 -79965783 + B1_Mus2 SINE Alu 1 147 0 2 921 822 238 48 5 chr9 44111112 44111319 -79964853 + B3 SINE B2 1 216 0 2 921 762 239 2 25 chr9 44111325 44111525 -79964647 + B3 SINE B2 1 187 -8 2 921 539 231 68 15 chr9 44111605 44111737 -79964435 - B1F SINE Alu -9 140 2 2 921 441 0 0 0 chr9 44111751 44111800 -79964372 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 921 427 242 133 73 chr9 44111827 44111992 -79964180 - B4 SINE B4 -48 244 70 2 921 525 271 96 96 chr9 44111974 44112194 -79963978 - B4 SINE B4 -72 220 1 2 921 211 267 141 22 chr9 44112198 44112290 -79963882 - MIR SINE MIR -49 213 111 2 921 1143 55 7 0 chr9 44112520 44112666 -79963506 + B1_Mus2 SINE Alu 1 147 0 2 921 299 217 0 55 chr9 44112771 44112844 -79963328 + RSINE1 SINE B4 9 77 -88 2 921 227 191 0 0 chr9 44114179 44114221 -79961951 - B1_Mur2 SINE Alu -59 90 49 2 921 316 252 20 20 chr9 44114223 44114324 -79961848 - ID_B1 SINE B4 -123 101 1 2 921 291 54 0 0 chr9 44114333 44114370 -79961802 + (T)n Simple_repeat Simple_repeat 1 37 0 2 921 798 34 248 0 chr9 44114370 44114487 -79961685 - B1_Mus2 SINE Alu 0 147 2 2 921 1148 68 0 0 chr9 44115131 44115278 -79960894 + B1_Mus2 SINE Alu 1 147 0 2 921 547 290 7 27 chr9 44115281 44115430 -79960742 + B1_Mus2 SINE Alu 2 147 0 2 921 272 287 18 149 chr9 44115440 44115608 -79960564 + ID_B1 SINE B4 72 217 -7 2 921 618 128 0 0 chr9 44115792 44115886 -79960286 - PB1D9 SINE Alu -26 94 1 2 921 817 248 28 28 chr9 44115890 44116102 -79960070 - B3 SINE B2 0 216 5 3 921 512 271 87 16 chr9 44116131 44116315 -79959857 - B3 SINE B2 -19 197 1 3 921 244 216 20 0 chr9 44116318 44116369 -79959803 - B1_Mur4 SINE Alu -98 52 1 3 921 216 0 0 0 chr9 44116369 44116393 -79959779 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 921 1181 48 0 0 chr9 44116400 44116547 -79959625 - B1_Mus2 SINE Alu 0 147 1 3 921 527 183 19 0 chr9 44116767 44116871 -79959301 - PB1D9 SINE Alu -3 117 12 3 921 377 317 21 35 chr9 44116887 44116902 -79959270 + ID_B1 SINE B4 83 224 0 3 921 413 276 54 16 chr9 44116902 44117031 -79959141 + B1F SINE Alu 16 149 0 3 921 235 233 117 0 chr9 44117039 44117099 -79959073 + tRNA-Ala-GCG tRNA tRNA 2 68 -7 3 921 231 253 86 74 chr9 44117099 44117114 -79959058 + ID4_ SINE ID 21 83 0 3 921 354 191 219 21 chr9 44117144 44117240 -79958932 + PB1D10 SINE Alu 1 115 -2 3 921 226 319 86 34 chr9 44117313 44117430 -79958742 - MIR3 SINE MIR -17 191 69 3 921 455 194 149 37 chr9 44117584 44117691 -79958481 - PB1D9 SINE Alu -1 119 1 3 921 332 211 14 14 chr9 44117711 44117783 -79958389 - ID4_ SINE ID -11 72 1 3 921 206 325 7 122 chr9 44117787 44117820 -79958352 - MIR SINE MIR -117 145 115 3 921 509 189 125 29 chr9 44117820 44117956 -79958216 + B1_Mur1 SINE Alu 1 149 0 3 921 206 325 7 122 chr9 44117956 44118069 -79958103 - MIR SINE MIR -148 114 16 3 921 23 0 0 0 chr9 44118311 44118334 -79957838 + AT_rich Low_complexity Low_complexity 1 23 0 3 921 538 278 0 8 chr9 44119868 44119995 -79956177 - B1F SINE Alu -1 148 23 3 921 298 226 138 17 chr9 44120160 44120253 -79955919 - PB1D10 SINE Alu -17 100 1 3 921 527 183 48 9 chr9 44120275 44120380 -79955792 - B1_Mur3 SINE Alu -40 109 1 3 921 617 157 0 9 chr9 44120449 44120565 -79955607 + GA-rich Low_complexity Low_complexity 3 117 0 3 921 240 239 0 38 chr9 44120565 44120642 -79955530 + B1F SINE Alu 48 149 0 3 921 738 261 47 5 chr9 44120674 44120867 -79955305 + B3 SINE B2 1 201 -15 3 921 582 229 24 16 chr9 44120875 44120999 -79955173 + RSINE1 SINE B4 12 136 -29 3 921 252 0 0 0 chr9 44121004 44121032 -79955140 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 921 393 348 7 7 chr9 44121061 44121200 -79954972 + ID_B1 SINE B4 86 224 0 3 921 458 296 9 0 chr9 44121416 44121524 -79954648 + B1F SINE Alu 1 109 -40 3 921 193 352 18 27 chr9 44123964 44124075 -79952097 + L2c LINE L2 3253 3362 -25 3 921 798 98 133 22 chr9 44125338 44125473 -79950699 + B1_Mur4 SINE Alu 1 150 0 3 921 375 292 8 70 chr9 44129113 44129242 -79946930 + PB1 SINE Alu 7 127 0 3 921 238 284 62 0 chr9 44129947 44130028 -79946144 + PB1D10 SINE Alu 9 94 -23 3 921 648 223 6 51 chr9 44130028 44130184 -79945988 + B1_Mur1 SINE Alu 1 149 0 3 921 692 159 87 0 chr9 44130567 44130693 -79945479 - B1_Mur1 SINE Alu 0 149 13 3 921 464 321 36 30 chr9 44130569 44130716 -79945456 - B4 SINE B4 -69 223 76 3 921 711 294 9 65 chr9 44130716 44130945 -79945227 + ID_B1 SINE B4 1 216 -8 3 921 344 235 12 12 chr9 44130970 44131052 -79945120 + ID4_ SINE ID 2 83 0 3 921 1330 84 16 10 chr9 44131079 44131271 -79944901 + B2_Mm2 SINE B2 3 195 0 3 921 455 236 9 35 chr9 44131354 44131468 -79944704 + PB1D10 SINE Alu 5 115 -2 3 921 1083 118 47 26 chr9 44131770 44131961 -79944211 + B2_Mm2 SINE B2 1 195 0 3 921 1029 51 7 7 chr9 44131969 44132107 -79944065 + B1_Mm SINE Alu 1 138 -9 3 921 414 0 0 0 chr9 44132109 44132155 -79944017 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 921 22 0 0 0 chr9 44132158 44132180 -79943992 + AT_rich Low_complexity Low_complexity 1 22 0 3 921 303 278 0 0 chr9 44132219 44132291 -79943881 + B1F2 SINE Alu 43 114 -35 3 921 27 29 0 0 chr9 44132944 44132978 -79943194 + AT_rich Low_complexity Low_complexity 1 34 0 3 921 261 139 0 0 chr9 44133483 44133526 -79942646 + (T)n Simple_repeat Simple_repeat 1 43 0 3 921 1205 40 0 0 chr9 44133526 44133674 -79942498 - B1_Mus1 SINE Alu 0 148 1 3 921 1225 51 85 0 chr9 44133674 44133851 -79942321 - B2_Mm1t SINE B2 0 193 2 3 921 332 207 0 99 chr9 44135873 44135964 -79940208 + ID4 SINE ID 2 83 0 3 921 198 0 0 0 chr9 44136492 44136514 -79939658 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 3 921 1128 78 7 0 chr9 44136531 44136684 -79939488 + B2_Mm1t SINE B2 2 155 -38 3 921 375 167 181 8 chr9 44136736 44136863 -79939309 + B2_Mm2 SINE B2 47 195 0 3 921 406 248 115 8 chr9 44136861 44136983 -79939189 - B1F SINE Alu -13 136 2 3 921 236 320 93 37 chr9 44136983 44137023 -79939149 - B4 SINE B4 -79 213 43 3 921 198 103 0 0 chr9 44137444 44137473 -79938699 + (T)n Simple_repeat Simple_repeat 1 29 0 3 921 1174 54 0 0 chr9 44137475 44137622 -79938550 - B1_Mus1 SINE Alu 0 148 2 3 921 647 315 121 28 chr9 44137632 44137844 -79938328 + MER90a LTR ERV1 111 336 -278 3 921 577 195 35 0 chr9 44137844 44137957 -79938215 - PB1D10 SINE Alu 0 117 1 3 921 647 315 121 28 chr9 44137957 44138133 -79938039 + MER90a LTR ERV1 337 535 -79 3 921 200 295 141 21 chr9 44138323 44138465 -79937707 - MIRb SINE MIR -49 219 61 3 921 338 298 43 0 chr9 44138554 44138648 -79937524 - B1_Mm SINE Alu -21 126 29 3 921 656 172 54 122 chr9 44138677 44138882 -79937290 - B2_Mm2 SINE B2 -2 193 3 3 921 249 220 0 0 chr9 44138967 44139017 -79937155 + ID_B1 SINE B4 79 128 -96 3 921 215 311 49 0 chr9 44139488 44139549 -79936623 - ID4_ SINE ID -15 68 5 3 921 357 274 138 51 chr9 44139559 44139755 -79936417 - ID_B1 SINE B4 0 224 12 3 921 216 0 0 0 chr9 44140402 44140426 -79935746 + (T)n Simple_repeat Simple_repeat 1 24 0 3 921 1144 62 0 0 chr9 44140426 44140572 -79935600 - B1_Mm SINE Alu 0 147 2 3 921 229 247 53 27 chr9 44141722 44141797 -79934375 - ID2 SINE ID -4 79 3 3 921 517 117 43 0 chr9 44142059 44142153 -79934019 + PB1D9 SINE Alu 22 119 -1 3 921 1071 55 14 7 chr9 44142153 44142299 -79933873 + B1_Mus1 SINE Alu 1 147 -1 3 921 223 236 0 18 chr9 44143395 44143451 -79932721 + C-rich Low_complexity Low_complexity 5 59 0 3 921 297 0 0 0 chr9 44144343 44144376 -79931796 + (T)n Simple_repeat Simple_repeat 1 33 0 3 921 638 184 51 14 chr9 44146214 44146352 -79929820 + B1_Mur4 SINE Alu 2 144 -6 3 921 224 164 0 52 chr9 44146358 44146382 -79929790 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 921 941 127 0 0 chr9 44146382 44146524 -79929648 + B1_Mus1 SINE Alu 1 142 -6 3 921 224 164 0 52 chr9 44146524 44146557 -79929615 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 3 921 1147 55 0 7 chr9 44146570 44146718 -79929454 + B1_Mm SINE Alu 1 147 0 3 921 255 200 18 0 chr9 44146745 44146800 -79929372 - B1_Mur2 SINE Alu -6 143 88 3 921 826 184 167 5 chr9 44146803 44146989 -79929183 - B3 SINE B2 0 216 1 3 921 1132 54 0 13 chr9 44147230 44147379 -79928793 + B1_Mus1 SINE Alu 2 148 0 3 921 345 125 0 0 chr9 44147407 44147463 -79928709 + (TGGG)n Simple_repeat Simple_repeat 2 57 0 3 921 690 216 15 0 chr9 44147842 44147976 -79928196 - B1F SINE Alu -8 141 6 3 921 235 364 0 11 chr9 44147899 44147988 -79928184 - B4 SINE B4 -125 167 80 3 921 303 157 0 0 chr9 44148010 44148080 -79928092 + T-rich Low_complexity Low_complexity 1 70 0 3 921 911 66 79 29 chr9 44148087 44148227 -79927945 - B1_Mus1 SINE Alu 0 148 2 3 921 548 292 8 0 chr9 44148288 44148418 -79927754 - RSINE1 SINE B4 -20 145 15 3 921 350 228 78 17 chr9 44148454 44148570 -79927602 - B1F1 SINE Alu -26 123 1 3 921 240 59 0 0 chr9 44148664 44148698 -79927474 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 921 400 296 57 23 chr9 44151253 44151429 -79924743 - MIRc SINE MIR -63 205 24 3 921 1150 98 54 16 chr9 44152408 44152594 -79923578 - B2_Mm2 SINE B2 -1 194 2 3 921 621 179 49 56 chr9 44152631 44152773 -79923399 - B1_Mur3 SINE Alu -8 141 1 3 921 291 221 12 61 chr9 44153021 44153103 -79923069 - PB1D10 SINE Alu 0 117 40 3 921 398 125 78 0 chr9 44153144 44153208 -79922964 - ID_B1 SINE B4 -10 214 146 3 921 689 226 209 0 chr9 44153265 44153442 -79922730 + B3 SINE B2 1 214 -2 3 921 401 297 127 0 chr9 44153462 44153580 -79922592 + ID_B1 SINE B4 80 212 -12 3 921 410 227 96 5 chr9 44153601 44153706 -79922466 + PB1D9 SINE Alu 3 113 -7 3 921 227 292 3 0 chr9 44153852 44153920 -79922252 - ID4_ SINE ID -14 69 1 3 921 309 197 99 0 chr9 44153940 44154011 -79922161 + PB1D10 SINE Alu 40 117 0 3 921 430 237 0 42 chr9 44154258 44154367 -79921805 + PB1 SINE Alu 12 116 -11 3 921 1113 62 14 0 chr9 44154367 44154512 -79921660 + B1_Mm SINE Alu 1 147 0 3 921 291 287 54 62 chr9 44154558 44154688 -79921484 + RSINE1 SINE B4 2 130 -35 3 921 236 301 58 0 chr9 44154796 44154899 -79921273 + PB1D10 SINE Alu 8 116 -1 3 921 490 148 109 18 chr9 44154960 44155070 -79921102 - PB1D9 SINE Alu 0 120 1 4 921 486 96 0 0 chr9 44155302 44155375 -79920797 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 921 219 298 144 0 chr9 44155375 44155479 -79920693 - RSINE1 SINE B4 -41 124 6 4 921 267 280 104 22 chr9 44155659 44155794 -79920378 - B1F1 SINE Alu -3 146 1 4 921 784 184 14 0 chr9 44156006 44156147 -79920025 + B1_Mur1 SINE Alu 7 149 0 4 921 615 229 44 33 chr9 44156766 44156947 -79919225 - B3A SINE B2 -14 184 2 4 921 1092 110 54 11 chr9 44157788 44157972 -79918200 - B2_Mm2 SINE B2 -3 192 1 4 921 270 0 0 0 chr9 44157982 44158012 -79918160 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 4 921 1157 43 0 0 chr9 44158014 44158154 -79918018 - B1_Mus2 SINE Alu -6 141 2 4 921 433 218 54 18 chr9 44158202 44158314 -79917858 - B3A SINE B2 -82 116 1 4 921 953 220 0 0 chr9 44158425 44158607 -79917565 - B3A SINE B2 -16 182 1 4 921 1165 49 0 0 chr9 44158758 44158901 -79917271 + B1_Mus1 SINE Alu 2 144 -4 4 921 777 118 0 0 chr9 44158903 44159022 -79917150 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 4 921 354 220 168 10 chr9 44159061 44159162 -79917010 + PB1D10 SINE Alu 1 117 0 4 921 448 280 0 48 chr9 44159216 44159340 -79916832 + PB1D7 SINE Alu 3 120 0 4 921 508 219 272 30 chr9 44159345 44159514 -79916658 + B3 SINE B2 2 211 -5 4 921 224 266 0 48 chr9 44159522 44159605 -79916567 + PB1D10 SINE Alu 18 96 -21 4 921 298 279 62 68 chr9 44159648 44159794 -79916378 + B4 SINE B4 1 146 -146 4 921 255 100 0 0 chr9 44159911 44159951 -79916221 + B2_Mm1t SINE B2 1 40 -153 4 921 721 181 20 14 chr9 44159955 44160101 -79916071 + B1_Mur2 SINE Alu 2 148 -1 4 921 1017 154 138 0 chr9 44160225 44160420 -79915752 - URR1A DNA MER1_type 0 226 5 4 921 222 91 0 0 chr9 44160881 44160914 -79915258 + (CAG)n Simple_repeat Simple_repeat 2 34 0 4 921 804 149 201 5 chr9 44161577 44161766 -79914406 + URR1A DNA MER1_type 1 226 0 4 921 587 172 2 66 chr9 44163411 44163553 -79912619 - B1_Mur1 SINE Alu 0 149 16 4 921 332 250 14 0 chr9 44164822 44164894 -79911278 + B4 SINE B4 8 80 -212 4 921 673 224 81 16 chr9 44164930 44165116 -79911056 + B3A SINE B2 1 198 0 4 921 497 259 103 60 chr9 44165122 44165339 -79910833 + B4 SINE B4 80 291 -1 4 921 275 212 49 29 chr9 44165473 44165575 -79910597 + B2_Mm2 SINE B2 92 195 0 4 921 1274 98 16 0 chr9 44165612 44165795 -79910377 + B2_Mm2 SINE B2 5 190 -5 4 921 1110 41 0 45 chr9 44165846 44166000 -79910172 + B1_Mus1 SINE Alu 1 147 -1 4 921 183 42 0 0 chr9 44166002 44166026 -79910146 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 921 1623 26 0 0 chr9 44166598 44166790 -79909382 - B2_Mm1t SINE B2 0 193 2 4 921 1019 172 194 0 chr9 44167464 44167644 -79908528 + B3 SINE B2 1 215 -1 4 921 647 298 62 0 chr9 44168193 44168270 -79907902 + ID SINE ID 2 88 -136 4 921 274 346 93 0 chr9 44168270 44168377 -79907795 + PB1D10 SINE Alu 1 117 0 4 921 544 182 41 0 chr9 44168420 44168541 -79907631 + Tigger7 DNA MER2_type 2259 2384 -107 4 921 349 205 107 12 chr9 44168697 44168781 -79907391 + PB1D9 SINE Alu 21 112 -8 4 921 237 137 17 136 chr9 44168734 44168793 -79907379 + ID_B1 SINE B4 172 223 -1 4 921 326 217 133 61 chr9 44168791 44168889 -79907283 + Tigger5 DNA MER2_type 138 242 -2164 4 921 367 304 0 0 chr9 44168897 44168989 -79907183 + Tigger5 DNA MER2_type 2308 2399 -7 4 921 336 77 0 0 chr9 44169179 44169231 -79906941 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 921 296 248 135 18 chr9 44169294 44169405 -79906767 - MIRm SINE MIR -119 157 34 4 921 1507 77 0 5 chr9 44170110 44170306 -79905866 + B2_Mm2 SINE B2 1 195 0 4 921 1447 68 16 5 chr9 44170306 44170498 -79905674 + B2_Mm2 SINE B2 2 195 0 4 921 1345 97 21 0 chr9 44170509 44170695 -79905477 + B2_Mm2 SINE B2 2 191 -4 4 921 1205 40 0 33 chr9 44170718 44170871 -79905301 + B1_Mus1 SINE Alu 1 148 0 4 922 719 288 56 47 chr9 44171528 44171761 -79904411 + 7SK RNA RNA 4 238 -93 4 922 308 282 122 12 chr9 44172174 44172274 -79903898 + B1F SINE Alu 1 119 -1 4 922 671 181 82 155 chr9 44172676 44172884 -79903288 - B3 SINE B2 0 216 5 4 922 401 207 35 0 chr9 44172858 44172945 -79903227 + B3 SINE B2 127 216 0 4 922 980 160 192 6 chr9 44172966 44173148 -79903024 - B3 SINE B2 0 216 1 4 922 2613 8 4 224 chr9 44173311 44173779 -79902393 - IAPLTR1_Mm LTR ERVK -2 365 1 4 922 52308 26 22 14 chr9 44173779 44180200 -79895972 - IAPEz-int LTR ERVK 0 6481 8 4 922 2656 11 2 223 chr9 44180200 44180671 -79895501 - IAPLTR1_Mm LTR ERVK 0 367 1 4 922 466 298 0 0 chr9 44180674 44180778 -79895394 + B1F SINE Alu 36 139 -10 4 922 739 251 41 63 chr9 44180794 44181015 -79895157 + B3 SINE B2 1 216 0 4 922 1110 108 0 0 chr9 44181056 44181204 -79894968 + B1_Mus1 SINE Alu 1 148 0 4 922 231 61 0 0 chr9 44181220 44181253 -79894919 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 922 1422 88 5 0 chr9 44181283 44181475 -79894697 + B2_Mm1a SINE B2 1 193 0 4 922 437 268 73 21 chr9 44181497 44181640 -79894532 + ID_B1 SINE B4 75 218 -6 4 922 218 176 74 56 chr9 44181594 44181648 -79894524 + PB1D7 SINE Alu 66 120 0 4 922 639 260 52 57 chr9 44181648 44181720 -79894452 + B3A SINE B2 2 75 -123 4 922 2638 153 83 16 chr9 44181720 44182211 -79893961 + RLTR28 LTR ERVL 1 524 0 4 922 639 228 45 164 chr9 44182211 44182358 -79893814 + B3A SINE B2 74 195 0 4 922 1440 149 14 9 chr9 44182376 44182599 -79893573 - MTC LTR MaLR -2 419 196 4 922 314 149 0 51 chr9 44182599 44182677 -79893495 + T-rich Low_complexity Low_complexity 1 74 0 4 922 1093 79 0 0 chr9 44183346 44183486 -79892686 - B1_Mus1 SINE Alu 0 148 9 4 922 1080 121 6 0 chr9 44183483 44183640 -79892532 - B2_Mm1t SINE B2 -26 167 10 4 922 681 152 9 0 chr9 44183643 44183748 -79892424 - MTC LTR MaLR -211 210 105 4 922 1003 141 7 0 chr9 44183781 44183930 -79892242 - B1_Mur4 SINE Alu 0 150 1 4 922 382 306 178 23 chr9 44183935 44184149 -79892023 - L1ME3A LINE L1 -12 6161 5915 4 922 265 267 55 82 chr9 44184157 44184267 -79891905 - PB1D10 SINE Alu -28 121 15 4 922 1390 57 34 6 chr9 44184816 44184992 -79891180 + B2_Mm2 SINE B2 1 181 -14 4 922 342 340 0 109 chr9 44185128 44185293 -79890879 + B1F SINE Alu 3 149 0 4 922 1442 82 0 10 chr9 44185297 44185494 -79890678 + B2_Mm2 SINE B2 1 195 0 4 922 808 186 35 14 chr9 44185499 44185641 -79890531 + B1_Mus2 SINE Alu 1 145 -2 4 922 1291 67 65 38 chr9 44185671 44185857 -79890315 + B2_Mm2 SINE B2 1 191 -4 4 922 188 228 18 0 chr9 44185859 44185916 -79890256 + G-rich Low_complexity Low_complexity 5 62 0 4 922 709 257 118 46 chr9 44185940 44186177 -79889995 + B4A SINE B4 37 290 -2 4 922 766 163 28 43 chr9 44186538 44186679 -79889493 - B1_Mur3 SINE Alu -7 142 4 4 922 324 243 18 97 chr9 44186581 44186695 -79889477 - MT2B LTR ERVL -345 256 152 4 922 1170 74 43 64 chr9 44186709 44186897 -79889275 - B2_Mm1t SINE B2 -8 185 2 4 922 320 262 0 24 chr9 44186919 44187001 -79889171 - ID4 SINE ID -2 81 2 4 922 378 292 39 40 chr9 44189719 44189879 -79886293 + MER20 DNA MER1_type 1 158 -625 4 922 753 160 23 0 chr9 44190356 44190487 -79885685 - B1_Mus2 SINE Alu -13 134 1 4 922 577 301 12 103 chr9 44190815 44190851 -79885321 - ID_B1 SINE B4 -35 257 182 4 922 896 145 0 46 chr9 44190851 44191003 -79885169 - B1_Mur4 SINE Alu 0 150 6 4 922 577 301 12 103 chr9 44191003 44191081 -79885091 - ID_B1 SINE B4 -35 181 11 4 922 475 173 192 0 chr9 44191525 44191629 -79884543 - B1_Mus1 SINE Alu 0 148 25 4 922 228 262 0 71 chr9 44191570 44191640 -79884532 - MT2B LTR ERVL -361 240 176 4 922 460 184 11 11 chr9 44191834 44191922 -79884250 - B1_Mur1 SINE Alu 0 149 62 4 922 1025 118 129 0 chr9 44193972 44194142 -79882030 + B2_Mm1t SINE B2 1 192 -1 4 922 425 236 130 19 chr9 44194166 44194274 -79881898 - B3 SINE B2 -40 176 57 4 922 246 186 0 65 chr9 44194406 44194452 -79881720 - RSINE1 SINE B4 -120 45 3 4 922 894 258 20 0 chr9 44194486 44194684 -79881488 - B3 SINE B2 -14 202 1 4 922 586 128 167 53 chr9 44194700 44194832 -79881340 + B1_Mm SINE Alu 1 147 0 4 922 399 255 82 172 chr9 44197859 44198082 -79878090 + B4A SINE B4 3 225 -67 4 922 801 71 204 0 chr9 44198082 44198195 -79877977 + B1_Mm SINE Alu 1 136 -11 4 922 399 255 82 172 chr9 44198195 44198274 -79877898 + B4A SINE B4 226 278 -14 4 922 865 164 20 14 chr9 44198309 44198457 -79877715 - B1_Mur3 SINE Alu 0 149 1 4 922 577 38 0 24 chr9 44198463 44198545 -79877627 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 4 922 935 240 39 0 chr9 44198600 44198804 -79877368 + B3 SINE B2 2 213 -3 4 922 223 266 16 0 chr9 44199573 44199637 -79876535 + CT-rich Low_complexity Low_complexity 2 66 0 4 922 234 0 0 0 chr9 44200258 44200284 -79875888 + (T)n Simple_repeat Simple_repeat 1 26 0 4 922 269 246 0 0 chr9 44200527 44200584 -79875588 - ID_B1 SINE B4 -60 164 108 4 922 666 95 47 9 chr9 44200601 44200707 -79875465 - B2_Mm2 SINE B2 -6 189 80 4 922 515 236 31 8 chr9 44200936 44201064 -79875108 + B1_Mur1 SINE Alu 18 148 -1 4 922 300 309 147 47 chr9 44201038 44201071 -79875101 + B4 SINE B4 46 132 -160 4 922 501 167 137 0 chr9 44201071 44201173 -79874999 + PB1D9 SINE Alu 5 120 0 4 922 300 309 147 47 chr9 44201173 44201208 -79874964 + B4 SINE B4 133 232 -60 4 922 417 250 65 140 chr9 44201246 44201262 -79874910 + ID_B1 SINE B4 78 127 -165 5 922 671 173 52 8 chr9 44201262 44201396 -79874776 + B1_Mm SINE Alu 8 147 0 5 922 417 250 65 140 chr9 44201396 44201432 -79874740 + ID_B1 SINE B4 128 252 -40 5 922 1082 37 89 0 chr9 44201503 44201638 -79874534 + B1_Mm SINE Alu 1 147 0 5 922 207 0 0 0 chr9 44201744 44201767 -79874405 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 922 1315 77 0 0 chr9 44202155 44202324 -79873848 + B2_Mm2 SINE B2 1 169 -26 5 922 1082 111 0 0 chr9 44202342 44202486 -79873686 + B1_Mus1 SINE Alu 2 145 -3 5 922 246 176 0 0 chr9 44202486 44202537 -79873635 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 922 1091 91 0 35 chr9 44202544 44202714 -79873458 + B2_Mm2 SINE B2 27 190 -5 5 922 461 293 0 0 chr9 44202785 44202884 -79873288 - B3A SINE B2 -91 107 9 5 922 473 84 0 14 chr9 44202980 44203052 -79873120 + (TTCCC)n Simple_repeat Simple_repeat 2 72 0 5 922 398 111 0 0 chr9 44203054 44203108 -79873064 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 922 270 0 0 0 chr9 44203108 44203138 -79873034 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 922 333 248 55 45 chr9 44203175 44203195 -79872977 - B4A SINE B4 -96 196 86 5 922 495 167 33 0 chr9 44203195 44203285 -79872887 - B1_Mus2 SINE Alu -54 93 1 5 922 264 200 31 115 chr9 44203204 44203300 -79872872 - MT2B2 LTR ERVL -343 241 154 5 922 687 206 0 22 chr9 44203609 44203743 -79872429 - B1_Mur1 SINE Alu 0 149 19 5 922 420 286 15 68 chr9 44203743 44203838 -79872334 - ID_B1 SINE B4 -68 223 39 5 922 281 202 54 97 chr9 44204280 44204373 -79871799 + B1_Mus1 SINE Alu 18 106 -42 5 922 229 282 81 57 chr9 44204373 44204389 -79871783 + ID_B1 SINE B4 98 209 -15 5 922 816 137 54 54 chr9 44204389 44204536 -79871636 + B1_Mus2 SINE Alu 1 147 0 5 922 229 282 81 57 chr9 44204536 44204550 -79871622 + ID_B1 SINE B4 210 223 -1 5 922 293 311 58 0 chr9 44205689 44205792 -79870380 + MER44B DNA MER2_type 7 115 -435 5 922 1246 55 0 0 chr9 44211207 44211353 -79864819 - B1_Mus2 SINE Alu 0 147 2 5 922 1123 88 0 33 chr9 44212999 44213151 -79863021 + B1_Mus1 SINE Alu 2 148 0 5 922 746 218 175 6 chr9 44213778 44213949 -79862223 - B3 SINE B2 -16 200 1 5 922 1123 62 28 7 chr9 44214094 44214239 -79861933 - B1_Mus1 SINE Alu 0 148 1 5 922 665 162 0 9 chr9 44214291 44214397 -79861775 + B1_Mus1 SINE Alu 6 110 -38 5 922 1658 15 15 0 chr9 44214398 44214593 -79861579 + ORR1A0 LTR MaLR 141 338 -8 5 922 239 255 26 62 chr9 44215099 44215212 -79860960 + C-rich Low_complexity Low_complexity 3 111 0 5 922 458 244 21 150 chr9 44216300 44216376 -79859796 - URR1A DNA MER1_type -1 225 165 5 922 1115 83 14 0 chr9 44216376 44216521 -79859651 - B1_Mus1 SINE Alu -1 147 1 5 922 458 244 21 150 chr9 44216521 44216637 -79859535 - URR1A DNA MER1_type -62 164 58 5 922 1218 34 7 7 chr9 44217253 44217400 -79858772 - B1_Mus2 SINE Alu 0 147 1 5 922 687 99 144 0 chr9 44219035 44219146 -79857026 + B2_Mm2 SINE B2 2 128 -67 5 922 356 253 64 15 chr9 44219159 44219284 -79856888 - B3 SINE B2 -64 134 2 5 922 544 144 102 10 chr9 44219284 44219355 -79856817 - B1_Mus1 SINE Alu -35 113 34 5 922 1123 125 27 0 chr9 44219430 44219614 -79856558 - B2_Mm1t SINE B2 -2 191 3 5 922 1143 76 7 0 chr9 44219647 44219791 -79856381 + B1_Mus1 SINE Alu 1 145 -3 5 922 288 270 68 0 chr9 44219952 44220026 -79856146 - PB1D7 SINE Alu -19 101 23 5 922 281 296 108 39 chr9 44219993 44220123 -79856049 - B4 SINE B4 -152 140 2 5 922 360 272 69 50 chr9 44220126 44220285 -79855887 + MT2B2 LTR ERVL 103 264 -320 5 922 764 158 90 0 chr9 44220187 44220320 -79855852 + B1_Mur4 SINE Alu 6 150 0 5 922 267 304 14 14 chr9 44220394 44220407 -79855765 + B4 SINE B4 74 143 -149 5 922 275 263 18 0 chr9 44220407 44220464 -79855708 + PB1D9 SINE Alu 1 58 -62 5 922 294 221 23 0 chr9 44221922 44221985 -79854187 - B1F SINE Alu -82 67 1 5 922 670 271 30 50 chr9 44222097 44222299 -79853873 - B3A SINE B2 0 198 1 5 922 938 162 7 0 chr9 44222457 44222605 -79853567 - B1_Mur3 SINE Alu 0 149 1 5 922 811 233 43 19 chr9 44222746 44222956 -79853216 + B3 SINE B2 2 216 0 5 922 447 284 48 93 chr9 44222957 44223153 -79853019 + B3A SINE B2 30 216 0 5 922 540 260 85 37 chr9 44223165 44223353 -79852819 + B3A SINE B2 2 198 0 5 922 2817 30 0 12 chr9 44223358 44223697 -79852475 + L1Md_F2 LINE L1 6247 6581 -1 5 922 1057 206 20 5 chr9 44223709 44223909 -79852263 + B3 SINE B2 3 205 -11 5 922 240 267 0 6 chr9 44223928 44224000 -79852172 + B1F SINE Alu 46 141 -8 5 922 783 169 88 0 chr9 44224078 44224214 -79851958 + B1_Mur3 SINE Alu 1 148 -1 5 922 203 158 0 0 chr9 44224214 44224252 -79851920 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 922 475 280 76 0 chr9 44224318 44224450 -79851722 + B3 SINE B2 1 142 -74 5 922 276 219 84 32 chr9 44224422 44224520 -79851652 - FAM SINE Alu -70 241 148 5 922 313 287 55 18 chr9 44224764 44224874 -79851298 - PB1D7 SINE Alu -2 118 5 5 922 1336 29 103 0 chr9 44224907 44225054 -79851118 + B2_Mm1a SINE B2 1 160 -33 5 922 207 0 0 0 chr9 44225054 44225077 -79851095 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 922 1336 29 103 0 chr9 44225077 44225103 -79851069 + B2_Mm1a SINE B2 161 191 -2 5 922 22 35 0 0 chr9 44225845 44225874 -79850298 + GC_rich Low_complexity Low_complexity 1 29 0 5 922 214 297 43 32 chr9 44226391 44226485 -79849687 - MIRb SINE MIR -43 225 131 5 922 846 80 176 0 chr9 44226606 44226731 -79849441 - B1_Mus1 SINE Alu 0 148 2 5 922 373 252 170 65 chr9 44227254 44227461 -79848711 + RMER21A LTR ERV1 280 600 -347 5 922 214 304 58 0 chr9 44227502 44227513 -79848659 - RSINE1 SINE B4 -88 77 5 5 922 320 155 69 0 chr9 44227513 44227571 -79848601 - B3A SINE B2 -133 65 4 5 922 303 315 22 11 chr9 44227612 44227702 -79848470 - PB1D7 SINE Alu -27 93 3 5 922 342 269 48 9 chr9 44227704 44227809 -79848363 - B3 SINE B2 -10 206 98 5 922 970 39 123 8 chr9 44227856 44227986 -79848186 + B1_Mm SINE Alu 3 147 0 5 922 301 190 0 17 chr9 44228319 44228378 -79847794 - B3 SINE B2 -126 90 33 5 922 411 202 36 0 chr9 44228381 44228465 -79847707 + Tigger5 DNA MER2_type 143 229 -2177 5 922 1054 244 85 64 chr9 44228559 44228996 -79847176 + RLTR12B LTR ERVK 39 484 -44 5 922 447 187 0 0 chr9 44229056 44229131 -79847041 + B3A SINE B2 3 77 -121 5 922 22 80 0 0 chr9 44229172 44229222 -79846950 + AT_rich Low_complexity Low_complexity 1 50 0 5 922 989 148 7 0 chr9 44229266 44229415 -79846757 - B1_Mur4 SINE Alu 0 150 1 5 922 665 235 121 16 chr9 44229415 44229604 -79846568 - B3 SINE B2 -2 214 5 5 922 576 229 24 8 chr9 44229770 44229893 -79846279 + ID_B1 SINE B4 93 217 -7 5 922 581 274 38 32 chr9 44229893 44230051 -79846121 + RSINE1 SINE B4 5 163 -2 5 922 303 239 98 41 chr9 44230240 44230362 -79845810 - MIRb SINE MIR -54 214 86 5 922 1117 116 66 11 chr9 44230552 44230735 -79845437 - B2_Mm2 SINE B2 -2 193 1 5 922 23 0 0 0 chr9 44230742 44230765 -79845407 + AT_rich Low_complexity Low_complexity 1 23 0 5 922 459 173 47 134 chr9 44230781 44230908 -79845264 + MT2B LTR ERVL 163 278 -323 5 922 1077 44 7 14 chr9 44230794 44230933 -79845239 + B1_Mus1 SINE Alu 10 147 -1 5 922 192 40 0 0 chr9 44230948 44230973 -79845199 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 5 922 2803 84 71 0 chr9 44231344 44231738 -79844434 - BGLII_Mus LTR ERVK 0 422 1 5 922 415 258 151 7 chr9 44231759 44231911 -79844261 - ID_B1 SINE B4 -5 219 46 5 922 389 209 21 32 chr9 44232423 44232502 -79843670 + MT2A LTR ERVL 1 80 -453 5 922 525 58 0 0 chr9 44232502 44232571 -79843601 + (TTTTC)n Simple_repeat Simple_repeat 3 71 0 5 922 389 209 21 32 chr9 44232571 44232585 -79843587 + MT2A LTR ERVL 81 93 -440 5 922 1463 84 11 0 chr9 44232585 44232776 -79843396 - B2_Mm1a SINE B2 0 193 1 5 922 943 140 13 53 chr9 44232821 44232972 -79843200 - B1_Mur4 SINE Alu -5 145 1 5 922 1233 142 62 43 chr9 44232975 44233001 -79843171 + MERVL_2A-int LTR ERVL 171 201 -5560 5 922 1698 203 40 70 chr9 44233001 44233457 -79842715 + RMER10A LTR ERVL 1 442 0 5 922 1233 142 62 43 chr9 44233457 44233688 -79842484 + MERVL_2A-int LTR ERVL 202 433 -5328 5 922 4227 159 12 19 chr9 44233690 44234410 -79841762 - MERVL_2A-int LTR ERVL -983 4778 4064 5 922 1286 34 0 0 chr9 44234410 44234557 -79841615 + B1_Mus2 SINE Alu 1 147 0 5 922 1777 149 48 0 chr9 44234580 44234875 -79841297 - MERVL_2A-int LTR ERVL -1827 3934 3626 5 922 2203 67 11 120 chr9 44234880 44234955 -79841217 - ORR1A2 LTR MaLR -8 319 287 5 922 1279 34 0 0 chr9 44234955 44235101 -79841071 - B1_Mus2 SINE Alu 0 147 2 5 922 2203 67 11 120 chr9 44235101 44235383 -79840789 - ORR1A2 LTR MaLR -41 286 1 5 922 4533 149 70 22 chr9 44235383 44236214 -79839958 - MERVL_2A-int LTR ERVL -2132 3629 2759 5 922 1526 136 53 0 chr9 44236211 44236454 -79839718 - MERVL_2A-int LTR ERVL -4102 1659 1404 5 922 2406 91 0 19 chr9 44236457 44236782 -79839390 - ORR1A2 LTR MaLR -8 319 1 5 922 2128 149 84 32 chr9 44236783 44236812 -79839360 - MERVL_2A-int LTR ERVL -4353 1408 1388 5 922 1277 113 32 0 chr9 44236812 44236997 -79839175 + B2_Mm1t SINE B2 1 191 -2 5 922 2128 149 84 32 chr9 44236997 44237405 -79838767 - MERVL_2A-int LTR ERVL -4374 1387 948 5 922 1200 50 0 0 chr9 44237446 44237585 -79838587 - B1_Mus2 SINE Alu -8 139 1 5 922 4306 140 29 27 chr9 44237596 44237822 -79838350 + MERVL_2A-int LTR ERVL 4802 5025 -736 5 922 252 0 0 0 chr9 44237822 44237850 -79838322 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 5 922 4306 140 29 27 chr9 44237850 44238372 -79837800 + MERVL_2A-int LTR ERVL 5026 5552 -209 5 922 1064 66 0 14 chr9 44238401 44238540 -79837632 - B2_Mm2 SINE B2 -22 173 37 5 922 455 174 0 93 chr9 44238514 44238622 -79837550 - B1_Mus1 SINE Alu -48 100 3 5 922 306 215 51 86 chr9 44238526 44238643 -79837529 - MT2B LTR ERVL -343 258 146 5 922 880 265 36 50 chr9 44238713 44238991 -79837181 + MT2B LTR ERVL 277 550 -51 6 922 348 190 94 71 chr9 44239016 44239101 -79837071 - PB1D9 SINE Alu -2 118 32 6 922 305 319 10 31 chr9 44239110 44239207 -79836965 - B1F SINE Alu -18 131 37 6 922 312 305 12 12 chr9 44239416 44239499 -79836673 + ID_B1 SINE B4 120 202 -22 6 922 304 281 77 10 chr9 44239499 44239520 -79836652 + B1F SINE Alu 39 149 0 6 922 378 245 65 47 chr9 44239522 44239624 -79836548 + PB1D9 SINE Alu 3 107 -13 6 922 252 0 0 0 chr9 44239624 44239652 -79836520 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 922 526 168 198 0 chr9 44239657 44239758 -79836414 + B3 SINE B2 10 130 -86 6 922 1568 50 0 0 chr9 44239803 44239984 -79836188 + B2_Mm1t SINE B2 1 181 -12 6 922 186 43 0 0 chr9 44239984 44240007 -79836165 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 922 1248 48 0 0 chr9 44240027 44240174 -79835998 - B1_Mus2 SINE Alu 0 147 1 6 922 180 0 0 0 chr9 44240175 44240195 -79835977 + (T)n Simple_repeat Simple_repeat 1 20 0 6 922 23 0 0 0 chr9 44240267 44240290 -79835882 + AT_rich Low_complexity Low_complexity 1 23 0 6 922 434 324 36 0 chr9 44240335 44240446 -79835726 - ID_B1 SINE B4 -29 195 81 6 922 1251 48 0 0 chr9 44240466 44240613 -79835559 + B1_Mus2 SINE Alu 1 147 0 6 922 222 37 0 0 chr9 44240640 44240667 -79835505 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 922 281 315 0 52 chr9 44240966 44241063 -79835109 + RMER10B LTR ERVL 250 341 -57 6 922 886 98 137 0 chr9 44241055 44241208 -79834964 - B2_Mm2 SINE B2 -20 175 2 6 922 1468 78 5 0 chr9 44242283 44242474 -79833698 - B2_Mm1t SINE B2 0 193 2 6 922 702 211 23 44 chr9 44242478 44242640 -79833532 - ID_B1 SINE B4 -37 255 84 6 922 804 176 15 0 chr9 44242858 44242989 -79833183 + B1_Mus2 SINE Alu 1 133 -14 6 922 581 206 19 9 chr9 44242989 44243097 -79833075 + B1F2 SINE Alu 36 144 -5 6 922 212 350 76 19 chr9 44244833 44244845 -79831327 - ID_B1 SINE B4 -37 187 132 6 922 318 274 83 0 chr9 44244845 44244929 -79831243 - PB1D10 SINE Alu -21 96 6 6 922 269 324 103 19 chr9 44244846 44244953 -79831219 - MT2B2 LTR ERVL -333 251 136 6 922 615 181 17 33 chr9 44245321 44245441 -79830731 + PB1D9 SINE Alu 1 118 -2 6 922 21 0 0 0 chr9 44245442 44245463 -79830709 + AT_rich Low_complexity Low_complexity 1 21 0 6 922 665 223 50 0 chr9 44245471 44245610 -79830562 + B1_Mus1 SINE Alu 1 146 -2 6 922 269 205 20 170 chr9 44245723 44245782 -79830390 + RCHARR1 DNA MER1_type 272 329 -645 6 922 889 155 0 20 chr9 44245782 44245933 -79830239 - B1_Mus1 SINE Alu 0 148 1 6 922 269 205 20 170 chr9 44245933 44245973 -79830199 + RCHARR1 DNA MER1_type 330 356 -618 6 922 385 283 36 18 chr9 44246001 44246120 -79830052 - RSINE1 SINE B4 -179 113 3 6 922 344 336 0 30 chr9 44246534 44246669 -79829503 - B4A SINE B4 -161 131 1 6 922 1216 68 0 0 chr9 44246811 44246958 -79829214 + B1_Mus2 SINE Alu 1 147 0 6 922 641 137 145 53 chr9 44246972 44247103 -79829069 + B1_Mur3 SINE Alu 7 149 0 6 922 213 264 0 132 chr9 44247224 44247245 -79828927 + B4A SINE B4 74 83 -209 6 922 237 239 0 12 chr9 44247245 44247310 -79828862 + B1F SINE Alu 1 63 -86 6 922 254 328 30 0 chr9 44247360 44247427 -79828745 + RSINE1 SINE B4 1 69 -96 6 922 252 250 94 12 chr9 44247637 44247722 -79828450 - ID_B1 SINE B4 -14 210 119 6 922 181 324 274 5 chr9 44247812 44247998 -79828174 + L2 LINE L2 2207 2442 -977 6 922 233 179 83 69 chr9 44248006 44248078 -79828094 + B1_Mur1 SINE Alu 77 149 0 6 922 415 265 234 6 chr9 44249158 44249329 -79826843 + ID_B1 SINE B4 5 214 -10 6 922 566 83 192 77 chr9 44249441 44249571 -79826601 + B1_Mur3 SINE Alu 5 149 0 6 922 215 163 0 23 chr9 44249571 44249615 -79826557 + GA-rich Low_complexity Low_complexity 4 46 0 6 922 198 0 0 0 chr9 44249668 44249690 -79826482 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 6 922 674 167 0 0 chr9 44249902 44250010 -79826162 - PB1D9 SINE Alu -7 113 6 6 922 27 49 0 32 chr9 44250019 44250037 -79826135 + AT_rich Low_complexity Low_complexity 1 18 0 6 922 1172 82 0 0 chr9 44250037 44250184 -79825988 - B1_Mus2 SINE Alu 0 147 1 6 922 27 49 0 32 chr9 44250184 44250228 -79825944 + AT_rich Low_complexity Low_complexity 1 43 0 6 922 1673 16 0 0 chr9 44250383 44250568 -79825604 - B2_Mm1a SINE B2 -7 186 2 6 922 250 325 52 0 chr9 44250593 44250670 -79825502 - ID4 SINE ID -1 82 2 6 922 805 178 191 16 chr9 44250817 44251000 -79825172 + B3 SINE B2 2 216 0 6 922 317 246 0 0 chr9 44251079 44251148 -79825024 - RSINE1 SINE B4 0 165 97 6 922 422 207 270 0 chr9 44251148 44251259 -79824913 - B1_Mur2 SINE Alu -8 141 1 6 922 329 259 0 37 chr9 44251261 44251372 -79824800 - ID2 SINE ID -42 110 10 6 922 241 232 43 0 chr9 44251381 44251450 -79824722 + B3A SINE B2 2 73 -125 6 922 603 154 205 0 chr9 44251633 44251750 -79824422 - B1_Mur2 SINE Alu -8 141 1 6 922 474 214 29 19 chr9 44251849 44251954 -79824218 - PB1D9 SINE Alu -3 117 12 6 922 486 280 0 9 chr9 44251955 44252063 -79824109 + B1_Mur2 SINE Alu 3 109 -40 6 922 351 342 47 27 chr9 44252063 44252105 -79824067 + B4 SINE B4 88 240 -52 6 922 210 237 88 184 chr9 44252096 44252146 -79824026 - ID_B1 SINE B4 -119 105 3 6 922 239 281 125 0 chr9 44252146 44252210 -79823962 - ID4_ SINE ID -9 74 3 6 922 221 167 0 23 chr9 44252215 44252258 -79823914 + CT-rich Low_complexity Low_complexity 1 42 0 6 922 686 165 8 0 chr9 44252258 44252391 -79823781 - BC1_Mm scRNA scRNA -18 134 1 6 922 498 194 7 101 chr9 44252440 44252578 -79823594 + B1_Mur2 SINE Alu 13 137 -12 6 922 333 0 0 0 chr9 44252578 44252615 -79823557 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 6 922 234 239 17 4 chr9 44252625 44252703 -79823469 - PB1 SINE Alu -7 120 50 6 922 198 0 0 0 chr9 44252712 44252734 -79823438 + (T)n Simple_repeat Simple_repeat 1 22 0 6 922 1189 75 0 0 chr9 44252748 44252894 -79823278 - B1_Mus2 SINE Alu 0 147 2 6 922 245 268 260 9 chr9 44253856 44253976 -79822196 - B4A SINE B4 -65 227 78 6 922 771 128 8 17 chr9 44254005 44254124 -79822048 - B1_Mur1 SINE Alu -2 147 30 6 922 542 281 92 83 chr9 44254008 44254225 -79821947 - B4 SINE B4 -69 223 5 6 922 1191 224 60 23 chr9 44254298 44254630 -79821542 - MTC LTR MaLR -8 392 34 6 922 608 160 0 19 chr9 44254631 44254739 -79821433 - URR1B DNA MER1_type 0 225 120 6 922 279 140 60 0 chr9 44254791 44254841 -79821331 - B1_Mur4 SINE Alu -96 54 2 6 922 379 232 61 0 chr9 44254841 44254923 -79821249 - B2_Mm2 SINE B2 -77 118 32 6 922 633 97 0 11 chr9 44254924 44255018 -79821154 + BC1_Mm scRNA scRNA 1 93 -59 6 922 323 235 25 0 chr9 44255104 44255185 -79820987 - ORR1D1 LTR MaLR -53 331 249 6 922 867 153 205 38 chr9 44255826 44256036 -79820136 - ORR1D1 LTR MaLR -129 245 1 6 922 1137 107 0 0 chr9 44256063 44256212 -79819960 - B1_Mur4 SINE Alu -1 149 1 6 922 1128 86 20 65 chr9 44256216 44256251 -79819921 - B2_Mm1a SINE B2 -2 191 163 6 922 243 0 0 0 chr9 44256251 44256278 -79819894 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 922 1128 86 20 65 chr9 44256278 44256441 -79819731 - B2_Mm1a SINE B2 -31 162 2 6 922 533 256 112 0 chr9 44256459 44256584 -79819588 + B1_Mur1 SINE Alu 3 141 -8 6 922 833 113 0 31 chr9 44256596 44256724 -79819448 + B1_Mus1 SINE Alu 2 125 -23 6 922 297 298 11 35 chr9 44256763 44256850 -79819322 + B3A SINE B2 87 171 -27 6 922 1749 150 57 47 chr9 44256880 44257286 -79818886 - RMER17C LTR ERVK 0 410 1 6 922 569 254 141 0 chr9 44257331 44257516 -79818656 - B3 SINE B2 -5 211 1 6 922 395 200 228 24 chr9 44257546 44257669 -79818503 - B1F2 SINE Alu 0 149 2 6 922 6960 59 0 5 chr9 44257703 44258573 -79817599 + L1Md_F2 LINE L1 5706 6571 -11 6 922 782 234 10 74 chr9 44258577 44258780 -79817392 - B3 SINE B2 0 216 27 6 922 267 103 0 0 chr9 44258780 44258819 -79817353 + (T)n Simple_repeat Simple_repeat 1 39 0 6 922 1004 51 63 42 chr9 44258819 44258962 -79817210 - B1_Mus2 SINE Alu 0 147 2 6 922 330 115 0 0 chr9 44259004 44259056 -79817116 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 922 540 229 14 54 chr9 44259065 44259213 -79816959 - RSINE1 SINE B4 -15 150 9 6 922 549 219 43 9 chr9 44259298 44259413 -79816759 - B1F SINE Alu -12 137 19 6 922 211 321 137 118 chr9 44259413 44259742 -79816430 - L2b LINE L2 -21 3354 3020 6 922 320 271 52 10 chr9 44259921 44260018 -79816154 + RSINE1 SINE B4 18 118 -47 6 922 714 138 14 58 chr9 44260044 44260183 -79815989 + B1_Mur4 SINE Alu 16 150 0 6 922 717 74 0 0 chr9 44260186 44260281 -79815891 + BC1_Mm scRNA scRNA 1 95 -57 6 922 252 86 0 0 chr9 44260281 44260316 -79815856 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 922 982 113 43 0 chr9 44263534 44263675 -79812497 + B1_Mus1 SINE Alu 2 148 0 6 922 228 119 15 106 chr9 44263675 44263741 -79812431 + A-rich Low_complexity Low_complexity 4 63 0 6 922 232 213 43 0 chr9 44264366 44264413 -79811759 - MER5A DNA MER1_type -80 109 61 7 922 678 272 41 0 chr9 44264443 44264590 -79811582 - RSINE1 SINE B4 -2 163 11 7 922 630 207 0 0 chr9 44264686 44264865 -79811307 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 922 836 156 0 11 chr9 44264884 44265065 -79811107 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 922 474 157 0 0 chr9 44266637 44266720 -79809452 + T-rich Low_complexity Low_complexity 1 83 0 7 922 225 0 0 0 chr9 44266816 44266841 -79809331 + (T)n Simple_repeat Simple_repeat 1 25 0 7 922 1191 75 0 0 chr9 44266841 44266988 -79809184 - B1_Mm SINE Alu 0 147 1 7 922 946 186 32 64 chr9 44267005 44267204 -79808968 - B3 SINE B2 0 216 17 7 922 564 15 0 0 chr9 44267204 44267269 -79808903 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 922 946 186 32 64 chr9 44267269 44267287 -79808885 - B3 SINE B2 -200 16 6 7 922 1290 82 27 5 chr9 44267436 44267620 -79808552 - B2_Mm2 SINE B2 -7 188 1 7 922 192 262 32 16 chr9 44267648 44267710 -79808462 - MIRm SINE MIR -132 144 82 7 922 1193 28 28 0 chr9 44268026 44268169 -79808003 - B1_Mus1 SINE Alu 0 148 2 7 922 451 157 0 92 chr9 44268172 44268270 -79807902 + B1_Mur4 SINE Alu 52 140 -10 7 922 459 0 0 0 chr9 44268270 44268321 -79807851 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 922 452 234 18 146 chr9 44268922 44269087 -79807085 + B1F SINE Alu 6 149 0 7 922 1136 82 0 7 chr9 44269136 44269283 -79806889 + B1_Mus1 SINE Alu 2 147 -1 7 922 187 54 54 0 chr9 44269287 44269324 -79806848 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 7 922 350 259 56 79 chr9 44269324 44269419 -79806753 + B1F1 SINE Alu 19 116 -33 7 922 2711 111 41 3 chr9 44269419 44269809 -79806363 - MTB_Mm LTR MaLR 0 407 3 7 922 350 259 56 79 chr9 44269809 44269839 -79806333 + B1F1 SINE Alu 117 141 -8 7 922 252 297 119 86 chr9 44269924 44270134 -79806038 + MLT1F1 LTR MaLR 270 486 -83 7 922 666 234 77 13 chr9 44270441 44270540 -79805632 + B3 SINE B2 51 161 -55 7 922 432 0 0 0 chr9 44270540 44270588 -79805584 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 922 666 234 77 13 chr9 44270588 44270644 -79805528 + B3 SINE B2 162 215 -1 7 922 493 210 9 4 chr9 44270651 44270759 -79805413 + PB1D9 SINE Alu 11 121 -28 7 922 279 298 125 0 chr9 44270744 44270848 -79805324 - RSINE1 SINE B4 -15 150 34 7 922 315 0 0 0 chr9 44270896 44270931 -79805241 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 7 922 334 250 13 13 chr9 44271177 44271254 -79804918 - ID SINE ID -146 78 2 7 922 266 188 62 0 chr9 44271256 44271304 -79804868 - PB1D7 SINE Alu 0 120 70 7 922 586 246 26 0 chr9 44271262 44271376 -79804796 - ID_B1 SINE B4 -6 218 102 7 922 264 59 0 0 chr9 44271411 44271445 -79804727 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 7 922 183 42 0 0 chr9 44271446 44271470 -79804702 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 922 510 80 22 22 chr9 44271505 44271595 -79804577 + (TATG)n Simple_repeat Simple_repeat 1 90 0 7 922 284 278 106 116 chr9 44271595 44271622 -79804550 - B3A SINE B2 0 198 70 7 922 749 258 12 31 chr9 44271622 44271782 -79804390 - RSINE1 SINE B4 0 165 9 7 922 284 278 106 116 chr9 44271782 44271794 -79804378 - B3A SINE B2 0 69 2 7 922 361 174 56 28 chr9 44271847 44271918 -79804254 + PB1D9 SINE Alu 48 120 0 7 922 475 315 53 7 chr9 44271944 44272094 -79804078 + B3A SINE B2 1 157 -41 7 922 483 63 0 0 chr9 44272097 44272160 -79804012 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 922 23 0 0 0 chr9 44272970 44272993 -79803179 + AT_rich Low_complexity Low_complexity 1 23 0 7 922 243 303 47 56 chr9 44274259 44274431 -79801741 - L2b LINE L2 -199 3188 3015 7 922 1156 48 0 33 chr9 44274470 44274621 -79801551 - B1_Mus1 SINE Alu -2 146 1 7 922 319 266 0 48 chr9 44275138 44275221 -79800951 + ID4 SINE ID 2 80 -3 7 922 1006 143 30 10 chr9 44275429 44275670 -79800502 + ORR1D1 LTR MaLR 1 383 -1 7 922 192 284 101 84 chr9 44276676 44276795 -79799377 - MIRm SINE MIR -114 162 42 7 922 583 197 40 16 chr9 44277926 44278050 -79798122 + ID_B1 SINE B4 85 211 -13 7 922 374 326 110 6 chr9 44278332 44278514 -79797658 - MIRb SINE MIR -11 257 57 7 922 240 261 31 0 chr9 44278849 44278914 -79797258 - ID_B1 SINE B4 -77 147 81 7 922 413 191 137 38 chr9 44278921 44279052 -79797120 - B1_Mur1 SINE Alu -1 148 5 7 922 225 0 0 0 chr9 44279172 44279197 -79796975 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 922 211 211 0 55 chr9 44279206 44279261 -79796911 - PB1D9 SINE Alu 0 120 69 7 922 216 132 353 0 chr9 44279350 44279416 -79796756 + B1F1 SINE Alu 14 103 -46 7 922 909 257 0 11 chr9 44279416 44279605 -79796567 + B3 SINE B2 1 187 -29 7 922 822 47 0 0 chr9 44279622 44279728 -79796444 - B1_Mus1 SINE Alu -8 140 35 7 922 186 43 0 0 chr9 44279732 44279755 -79796417 + (T)n Simple_repeat Simple_repeat 1 23 0 7 922 253 132 0 0 chr9 44279760 44279798 -79796374 + B1_Mur1 SINE Alu 86 123 -26 7 922 252 247 237 0 chr9 44279838 44279918 -79796254 + B4 SINE B4 128 230 -62 7 922 494 246 62 7 chr9 44279918 44280097 -79796075 + B3A SINE B2 1 186 -9 7 922 231 258 0 61 chr9 44280134 44280200 -79795972 + ID_B1 SINE B4 154 215 -9 7 922 444 336 99 58 chr9 44280235 44280529 -79795643 + L3 LINE CR1 4163 4468 -21 7 922 506 211 135 38 chr9 44280704 44280837 -79795335 + B1F2 SINE Alu 2 147 -2 7 922 692 173 57 7 chr9 44280843 44280983 -79795189 + B1F2 SINE Alu 2 148 -1 7 922 812 192 186 6 chr9 44281375 44281558 -79794614 - B3 SINE B2 0 216 1 7 922 983 155 0 13 chr9 44281820 44281970 -79794202 + B1_Mur4 SINE Alu 2 149 -1 7 922 1046 37 7 0 chr9 44282171 44282307 -79793865 - B1_Mus1 SINE Alu 0 148 12 7 922 617 204 18 48 chr9 44282307 44282336 -79793836 - ID_B1 SINE B4 0 224 65 7 922 315 319 10 0 chr9 44282968 44283065 -79793107 - ID4_ SINE ID -53 99 2 7 922 916 122 15 0 chr9 44283094 44283225 -79792947 + B1_Mus1 SINE Alu 1 133 -15 7 922 270 271 46 10 chr9 44283227 44283334 -79792838 + PB1 SINE Alu 5 124 -3 7 922 351 291 48 0 chr9 44283382 44283485 -79792687 + PB1D10 SINE Alu 9 116 -1 7 922 1274 95 25 35 chr9 44283492 44283658 -79792514 + B2_Mm2 SINE B2 1 161 -34 7 922 212 59 29 0 chr9 44283658 44283692 -79792480 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 922 1253 48 0 0 chr9 44283692 44283837 -79792335 + B1_Mm SINE Alu 1 145 -2 7 922 1274 95 25 35 chr9 44283837 44283866 -79792306 + B2_Mm2 SINE B2 162 194 -1 7 922 447 294 85 35 chr9 44283878 44284019 -79792153 + B1F1 SINE Alu 1 148 -1 7 922 893 227 23 37 chr9 44284096 44284311 -79791861 + B3 SINE B2 5 216 0 7 922 638 164 10 0 chr9 44284380 44284484 -79791688 + B1_Mus2 SINE Alu 29 133 -14 7 922 374 194 0 0 chr9 44284501 44284573 -79791599 - U6 snRNA snRNA -8 99 28 7 922 530 208 47 0 chr9 44284613 44284719 -79791453 - RSINE1 SINE B4 -43 122 12 7 922 525 307 46 10 chr9 44284953 44285147 -79791025 + L2b LINE L2 3173 3373 -2 7 922 522 0 0 0 chr9 44285178 44285236 -79790936 + (GAA)n Simple_repeat Simple_repeat 2 59 0 7 922 373 273 52 15 chr9 44285273 44285407 -79790765 + B1F SINE Alu 1 139 -10 7 922 318 203 24 48 chr9 44285426 44285509 -79790663 + ID4_ SINE ID 2 82 -1 7 922 308 333 60 100 chr9 44288697 44288719 -79787453 + B4 SINE B4 69 212 -80 7 922 696 198 0 16 chr9 44288719 44288847 -79787325 + B1_Mur1 SINE Alu 10 135 -14 7 922 298 281 6 145 chr9 44288847 44288869 -79787303 + MT2B LTR ERVL 181 303 -298 7 922 195 278 237 0 chr9 44289036 44289133 -79787039 + MIRb SINE MIR 117 236 -32 7 922 370 184 90 26 chr9 44289169 44289324 -79786848 + B3A SINE B2 1 208 -8 7 922 715 145 40 92 chr9 44289357 44289509 -79786663 + B1_Mur3 SINE Alu 3 146 -3 7 922 314 297 29 10 chr9 44289613 44289715 -79786457 - ID_B1 SINE B4 -1 223 120 7 922 293 340 124 0 chr9 44290074 44290271 -79785901 + MIRc SINE MIR 2 230 -38 7 922 270 81 0 0 chr9 44290534 44290571 -79785601 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 922 23 97 0 0 chr9 44291018 44291090 -79785082 + GC_rich Low_complexity Low_complexity 1 72 0 7 922 24 32 0 0 chr9 44291143 44291174 -79784998 + GC_rich Low_complexity Low_complexity 1 31 0 7 922 254 95 0 23 chr9 44291185 44291228 -79784944 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 7 922 216 0 0 0 chr9 44292474 44292498 -79783674 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 922 326 43 43 0 chr9 44294623 44294670 -79781502 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 7 922 318 80 0 0 chr9 44297523 44297573 -79778599 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 922 189 139 0 0 chr9 44297628 44297671 -79778501 + (CTGGGG)n Simple_repeat Simple_repeat 5 47 0 7 922 486 120 0 0 chr9 44297950 44298025 -79778147 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 922 488 149 11 0 chr9 44298308 44298402 -79777770 + (CA)n Simple_repeat Simple_repeat 2 96 0 7 922 260 333 158 7 chr9 44299144 44299283 -79776889 + MIR SINE MIR 1 160 -102 7 922 285 278 32 43 chr9 44299300 44299394 -79776778 + PB1D7 SINE Alu 27 119 -1 7 922 409 286 40 40 chr9 44299448 44299572 -79776600 + PB1 SINE Alu 2 125 -2 7 922 472 294 39 117 chr9 44299585 44299816 -79776356 + ID_B1 SINE B4 5 217 -7 7 922 322 219 0 40 chr9 44299848 44299924 -79776248 + PB1D7 SINE Alu 44 116 -4 8 922 269 296 34 0 chr9 44299925 44300013 -79776159 + BC1_Mm scRNA scRNA 12 102 -50 8 922 325 225 103 0 chr9 44300220 44300321 -79775851 - B1_Mur3 SINE Alu -35 114 2 8 922 239 316 86 17 chr9 44302041 44302157 -79774015 - MIRc SINE MIR -123 145 22 8 923 303 28 0 0 chr9 44304286 44304322 -79771850 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 923 386 320 8 8 chr9 44304322 44304448 -79771724 - B1_Mur1 SINE Alu -15 134 9 8 923 490 326 7 0 chr9 44304454 44304589 -79771583 - B1F SINE Alu -13 136 1 8 923 263 369 33 0 chr9 44304485 44304607 -79771565 - B4A SINE B4 -99 193 68 8 923 245 299 111 20 chr9 44304853 44304952 -79771220 - PB1D10 SINE Alu -7 110 3 8 923 388 291 162 0 chr9 44305507 44305624 -79770548 - B1F SINE Alu -8 141 6 8 923 199 262 93 37 chr9 44305764 44305871 -79770301 + MIRc SINE MIR 38 150 -118 8 923 369 0 0 0 chr9 44305993 44306034 -79770138 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 923 213 39 0 0 chr9 44310047 44310073 -79766099 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 923 207 162 0 0 chr9 44310209 44310246 -79765926 + CT-rich Low_complexity Low_complexity 3 39 0 8 923 565 288 0 0 chr9 44311019 44311144 -79765028 - ID_B1 SINE B4 -13 211 87 8 923 932 243 100 61 chr9 44311721 44312023 -79764149 + MER21B LTR ERV1 1 314 -549 8 923 444 256 105 72 chr9 44312023 44312204 -79763968 + B4 SINE B4 2 188 -104 8 923 199 327 55 73 chr9 44312567 44312676 -79763496 - MIRc SINE MIR -97 171 65 8 923 393 22 0 0 chr9 44312762 44312808 -79763364 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 923 180 77 0 0 chr9 44312808 44312834 -79763338 + (GA)n Simple_repeat Simple_repeat 1 26 0 8 923 203 133 44 0 chr9 44319825 44319870 -79756302 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 923 258 32 0 0 chr9 44322426 44322457 -79753715 + (TTC)n Simple_repeat Simple_repeat 2 32 0 8 923 585 248 68 0 chr9 44322588 44322721 -79753451 - B1_Mur1 SINE Alu -3 146 5 8 923 1697 31 0 0 chr9 44322733 44322926 -79753246 - B2_Mm1a SINE B2 0 193 1 8 923 21 36 0 0 chr9 44322936 44322964 -79753208 + AT_rich Low_complexity Low_complexity 1 28 0 8 923 210 225 0 0 chr9 44322969 44323009 -79753163 - ID4 SINE ID -41 42 3 8 923 204 40 0 0 chr9 44323021 44323046 -79753126 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 8 923 1048 212 14 10 chr9 44324336 44324545 -79751627 - B3 SINE B2 -4 212 3 8 923 285 270 45 0 chr9 44324639 44324728 -79751444 + PB1 SINE Alu 35 127 0 8 923 313 285 113 23 chr9 44324884 44325017 -79751155 + B1F2 SINE Alu 2 146 -3 8 923 341 250 13 13 chr9 44325163 44325240 -79750932 + ID4 SINE ID 5 81 -2 8 923 524 102 0 10 chr9 44326541 44326640 -79749532 + (TG)n Simple_repeat Simple_repeat 2 99 0 8 923 415 302 26 0 chr9 44326863 44326979 -79749193 + PB1 SINE Alu 1 119 -8 8 923 483 126 0 0 chr9 44326982 44327077 -79749095 + (CA)n Simple_repeat Simple_repeat 1 95 0 8 923 289 386 71 17 chr9 44327148 44327388 -79748784 + L3 LINE CR1 4062 4314 -175 8 923 215 121 0 0 chr9 44327655 44327688 -79748484 - ID4 SINE ID -38 45 13 8 923 646 243 33 0 chr9 44327725 44327877 -79748295 - B4A SINE B4 -2 290 134 8 923 828 61 0 17 chr9 44327903 44328020 -79748152 - B1_Mus1 SINE Alu 0 148 34 8 923 370 205 47 35 chr9 44327950 44328036 -79748136 - MT2B LTR ERVL -344 257 171 8 923 1145 186 54 0 chr9 44328036 44328240 -79747932 - B3 SINE B2 0 216 2 8 923 1354 103 16 0 chr9 44328350 44328535 -79747637 - B2_Mm2 SINE B2 -6 189 2 8 923 1041 144 0 0 chr9 44328538 44328684 -79747488 - B1_Mus1 SINE Alu -1 147 2 8 923 508 226 50 28 chr9 44328693 44328834 -79747338 - B1F SINE Alu -5 144 1 8 923 397 289 75 96 chr9 44329132 44329331 -79746841 - B3A SINE B2 0 198 1 8 923 329 219 127 45 chr9 44329340 44329450 -79746722 - ID_B1 SINE B4 -6 218 100 8 923 29 0 0 0 chr9 44329631 44329660 -79746512 + AT_rich Low_complexity Low_complexity 1 29 0 8 923 600 210 25 0 chr9 44329680 44329799 -79746373 - RSINE1 SINE B4 -41 124 3 8 923 397 266 17 84 chr9 44330639 44330758 -79745414 + RSINE1 SINE B4 18 128 -37 8 923 342 0 0 0 chr9 44330766 44330804 -79745368 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 923 308 83 0 20 chr9 44330805 44330854 -79745318 + (TAA)n Simple_repeat Simple_repeat 2 49 0 8 923 412 227 81 108 chr9 44330854 44330869 -79745303 + MT2B LTR ERVL 153 223 -378 8 923 704 33 0 0 chr9 44330869 44330959 -79745213 + B1_Mus1 SINE Alu 1 90 -58 8 923 698 239 15 0 chr9 44330965 44331099 -79745073 + B1_Mur2 SINE Alu 5 140 -9 8 923 412 227 81 108 chr9 44331099 44331135 -79745037 + MT2B LTR ERVL 263 296 -305 8 923 720 160 0 158 chr9 44331100 44331170 -79745002 + B1_Mur4 SINE Alu 6 66 -84 8 923 1264 116 5 10 chr9 44331170 44331362 -79744810 - B2_Mm1t SINE B2 0 193 3 8 923 720 160 0 158 chr9 44331362 44331462 -79744710 + B1_Mur4 SINE Alu 67 149 -1 8 923 454 273 55 0 chr9 44331517 44331627 -79744545 + RSINE1 SINE B4 5 120 -45 8 923 301 281 33 11 chr9 44331860 44331950 -79744222 + PB1D10 SINE Alu 24 115 -2 8 923 226 269 19 0 chr9 44331980 44332032 -79744140 - MER45A DNA Tip100 -76 102 50 8 923 326 336 17 52 chr9 44332726 44332842 -79743330 + PB1D10 SINE Alu 4 115 -2 8 923 256 317 99 0 chr9 44333657 44333758 -79742414 - PB1D9 SINE Alu -5 115 5 8 923 492 242 82 15 chr9 44333699 44333833 -79742339 - ID_B1 SINE B4 -80 144 2 8 923 386 180 98 55 chr9 44333943 44334066 -79742106 + B1_Mur4 SINE Alu 9 150 0 8 923 216 0 0 0 chr9 44334657 44334681 -79741491 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 923 222 37 0 0 chr9 44334689 44334716 -79741456 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 8 923 452 184 153 0 chr9 44334943 44335041 -79741131 + MER81 DNA AcHobo 1 113 -1 8 923 401 316 32 75 chr9 44335277 44335465 -79740707 - MIR3 SINE MIR -25 183 4 8 923 597 28 0 0 chr9 44335689 44335760 -79740412 + (GA)n Simple_repeat Simple_repeat 1 71 0 8 923 582 228 65 0 chr9 44335809 44335932 -79740240 - RSINE1 SINE B4 -33 132 2 8 923 381 298 29 0 chr9 44336321 44336425 -79739747 + PB1D10 SINE Alu 10 116 -1 8 923 241 340 50 0 chr9 44336593 44336693 -79739479 - L3 LINE CR1 -328 4161 4057 8 923 318 26 0 0 chr9 44337071 44337110 -79739062 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 923 459 139 0 0 chr9 44337110 44337211 -79738961 + (GA)n Simple_repeat Simple_repeat 2 102 0 8 923 759 22 0 0 chr9 44337428 44337517 -79738655 + (TCCCC)n Simple_repeat Simple_repeat 5 93 0 8 923 295 293 36 12 chr9 44337518 44337601 -79738571 + RSINE1 SINE B4 67 151 -14 8 923 189 0 0 0 chr9 44337603 44337624 -79738548 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 923 429 233 133 19 chr9 44337640 44337745 -79738427 + MTD LTR MaLR 1 117 -302 8 923 594 0 0 0 chr9 44337745 44337811 -79738361 + (TTTTC)n Simple_repeat Simple_repeat 5 70 0 8 923 680 0 12 0 chr9 44337811 44337890 -79738282 + (TTTCC)n Simple_repeat Simple_repeat 3 83 0 8 923 664 201 273 17 chr9 44337907 44338079 -79738093 - B3 SINE B2 0 216 1 8 923 252 0 0 0 chr9 44338095 44338123 -79738049 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 8 923 1272 93 2 16 chr9 44338123 44338673 -79737499 + (TTTC)n Simple_repeat Simple_repeat 1 541 0 8 923 822 165 0 48 chr9 44338673 44338819 -79737353 - B1_Mus1 SINE Alu -7 141 3 8 923 938 214 193 11 chr9 44338824 44339088 -79737084 + MTD LTR MaLR 108 419 0 8 923 567 78 0 0 chr9 44339167 44339244 -79736928 + (TA)n Simple_repeat Simple_repeat 2 78 0 8 923 1190 56 0 0 chr9 44339244 44339387 -79736785 - B1_Mm SINE Alu -2 145 3 8 923 1473 54 16 0 chr9 44339401 44339585 -79736587 - B2_Mm2 SINE B2 -8 187 1 8 923 235 305 62 10 chr9 44339606 44339702 -79736470 + B1F1 SINE Alu 41 141 -8 8 923 239 218 67 168 chr9 44339798 44339947 -79736225 + ORR1C1 LTR MaLR 232 365 -13 8 923 515 252 0 0 chr9 44340667 44340782 -79735390 - PB1D9 SINE Alu -1 119 5 8 923 211 114 22 22 chr9 44340982 44341027 -79735145 + CT-rich Low_complexity Low_complexity 3 47 0 8 923 281 291 57 41 chr9 44341189 44341311 -79734861 - MIRb SINE MIR -29 239 116 8 923 230 228 165 0 chr9 44341977 44342056 -79734116 - MER5A DNA MER1_type 0 189 98 8 923 225 257 118 56 chr9 44342444 44342588 -79733584 + RLTR22_Mur LTR ERVK 1308 1460 -388 8 923 342 208 13 77 chr9 44342579 44342657 -79733515 - RSINE1 SINE B4 0 165 93 8 923 353 308 16 71 chr9 44342733 44342859 -79733313 - PB1D7 SINE Alu -1 119 1 8 923 1743 229 71 2 chr9 44342980 44343374 -79732798 - MTC LTR MaLR 0 421 1 8 923 213 154 0 0 chr9 44343458 44343497 -79732675 + (CCTG)n Simple_repeat Simple_repeat 1 39 0 8 923 656 212 25 0 chr9 44343497 44343615 -79732557 - B1_Mur1 SINE Alu -8 141 21 8 923 639 340 46 48 chr9 44343788 44344180 -79731992 + Lx8 LINE L1 6932 7322 -151 8 923 681 167 0 9 chr9 44344358 44344473 -79731699 + B1_Mur2 SINE Alu 34 147 -2 8 923 335 253 11 44 chr9 44344664 44344755 -79731417 + HAL1-3A_ME LINE L1 1975 2062 -796 8 923 511 257 0 0 chr9 44344766 44344867 -79731305 + PB1D7 SINE Alu 3 103 -17 9 923 368 248 124 31 chr9 44344867 44344895 -79731277 + ID_B1 SINE B4 84 224 0 9 923 191 257 65 39 chr9 44345213 44345290 -79730882 - L2a LINE L2 -12 3414 3336 9 923 243 299 58 0 chr9 44345700 44345787 -79730385 - PB1D10 SINE Alu -25 92 1 9 923 288 158 0 0 chr9 44347296 44347372 -79728800 + G-rich Low_complexity Low_complexity 29 104 0 9 923 441 235 113 0 chr9 44347372 44347487 -79728685 - RSINE1 SINE B4 -37 128 1 9 923 288 0 0 0 chr9 44348479 44348511 -79727661 + (T)n Simple_repeat Simple_repeat 1 32 0 9 923 1171 81 0 0 chr9 44348511 44348659 -79727513 - B1_Mus1 SINE Alu 0 148 1 9 923 964 221 13 58 chr9 44348755 44348981 -79727191 - B3 SINE B2 0 216 1 9 923 711 251 76 10 chr9 44348989 44349186 -79726986 - B3 SINE B2 -4 212 3 9 923 25 51 0 0 chr9 44349199 44349238 -79726934 + AT_rich Low_complexity Low_complexity 1 39 0 9 923 687 233 96 11 chr9 44349238 44349416 -79726756 - B3 SINE B2 0 216 24 9 923 371 242 34 209 chr9 44349421 44349459 -79726713 - B2_Mm2 SINE B2 -1 194 162 9 923 1062 75 20 26 chr9 44349459 44349610 -79726562 + B1_Mur4 SINE Alu 1 150 0 9 923 553 246 103 83 chr9 44349610 44349806 -79726366 - B3A SINE B2 -14 202 1 9 923 220 289 71 82 chr9 44350053 44350151 -79726021 - L2a LINE L2 -53 3373 3277 9 923 694 243 0 0 chr9 44350221 44350357 -79725815 + B1_Mur1 SINE Alu 14 149 0 9 923 186 289 269 15 chr9 44350597 44350857 -79725315 - L2a LINE L2 -906 2513 2188 9 923 315 325 162 23 chr9 44350842 44351015 -79725157 - MIR SINE MIR -61 201 5 9 923 1032 107 14 0 chr9 44351173 44351313 -79724859 - B1_Mur4 SINE Alu -8 142 1 9 923 240 245 0 20 chr9 44351424 44351474 -79724698 - RSINE1 SINE B4 -95 70 22 9 923 812 192 0 14 chr9 44351532 44351680 -79724492 - B1_Mur1 SINE Alu -2 147 2 9 923 553 253 103 46 chr9 44351863 44352037 -79724135 - ID_B1 SINE B4 -39 185 2 9 923 2145 118 56 159 chr9 44352174 44352364 -79723808 - RMER4A LTR ERVK 0 466 339 9 923 1076 83 20 20 chr9 44352364 44352511 -79723661 - B1_Mus1 SINE Alu 0 148 2 9 923 2145 118 56 159 chr9 44352511 44352803 -79723369 - RMER4A LTR ERVK -128 338 34 9 923 459 0 0 0 chr9 44352957 44353008 -79723164 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 923 319 191 14 14 chr9 44353715 44353784 -79722388 + PB1D9 SINE Alu 49 117 -3 9 923 389 268 49 129 chr9 44353763 44353786 -79722386 + B4 SINE B4 70 79 -213 9 923 862 191 7 0 chr9 44353786 44353933 -79722239 + B1_Mus1 SINE Alu 1 148 0 9 923 711 235 0 0 chr9 44354272 44354408 -79721764 + B1_Mur1 SINE Alu 2 137 -12 9 923 444 37 0 0 chr9 44354408 44354462 -79721710 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 9 923 1603 31 5 20 chr9 44354650 44354845 -79721327 - B2_Mm1a SINE B2 -1 192 1 9 923 792 116 29 6 chr9 44355195 44355368 -79720804 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 9 923 527 248 0 0 chr9 44355368 44355477 -79720695 - PB1D9 SINE Alu -10 110 2 9 923 671 252 67 0 chr9 44355479 44355614 -79720558 - B3 SINE B2 -17 199 56 9 923 265 161 18 18 chr9 44356169 44356226 -79719946 + B4 SINE B4 43 99 -193 9 923 491 248 21 34 chr9 44356269 44356434 -79719738 + B4 SINE B4 17 205 -87 9 923 486 0 0 0 chr9 44356434 44356488 -79719684 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 923 225 293 107 113 chr9 44356488 44356542 -79719630 + RSINE1 SINE B4 125 165 0 9 923 280 326 90 21 chr9 44356579 44356723 -79719449 + Charlie1b DNA MER1_type 70 223 -300 9 923 638 245 13 47 chr9 44356726 44356832 -79719340 - B1_Mur1 SINE Alu -2 147 42 9 923 2184 120 76 9 chr9 44356832 44357176 -79718996 + ORR1B2 LTR MaLR 1 367 0 9 923 638 245 13 47 chr9 44357176 44357219 -79718953 - B1_Mur1 SINE Alu -108 41 3 9 923 1342 185 288 18 chr9 44357210 44357540 -79718632 + MTD LTR MaLR 1 419 0 9 923 697 271 77 96 chr9 44357574 44357897 -79718275 - MLT1A0 LTR MaLR 0 365 49 9 923 828 30 0 0 chr9 44357952 44358051 -79718121 + (TTCTC)n Simple_repeat Simple_repeat 1 99 0 9 923 251 261 46 0 chr9 44358051 44358116 -79718056 - ID4_ SINE ID -7 76 9 9 923 451 237 10 0 chr9 44358117 44358214 -79717958 - PB1D10 SINE Alu -5 112 15 9 923 278 211 18 0 chr9 44358225 44358282 -79717890 - MLT1A0 LTR MaLR -307 58 1 9 923 524 226 148 0 chr9 44358359 44358474 -79717698 - B1_Mur2 SINE Alu -17 132 1 9 923 447 265 0 25 chr9 44358549 44358669 -79717503 - PB1D10 SINE Alu 0 117 1 9 923 584 260 45 0 chr9 44358698 44358852 -79717320 - RSINE1 SINE B4 -2 163 3 9 923 1350 89 0 45 chr9 44358890 44359089 -79717083 + B2_Mm2 SINE B2 2 191 -4 9 923 549 203 130 0 chr9 44359623 44359746 -79716426 + B1_Mur1 SINE Alu 5 143 -6 9 923 791 257 0 55 chr9 44359826 44360028 -79716144 + B3 SINE B2 1 191 -25 9 923 396 169 0 66 chr9 44360247 44360323 -79715849 - B3 SINE B2 -71 145 75 9 923 313 279 157 0 chr9 44360388 44360560 -79715612 + MLT1F LTR MaLR 15 213 -335 9 923 330 239 34 0 chr9 44360945 44361033 -79715139 - ERVL-E-int LTR ERVL -3418 2296 2206 9 923 320 239 0 38 chr9 44361102 44361191 -79714981 - MLT1A1 LTR MaLR -12 396 277 9 923 441 221 31 62 chr9 44361226 44361356 -79714816 - ERVL-E-int LTR ERVL -4244 1423 1298 9 923 732 200 28 0 chr9 44361356 44361501 -79714671 + B1_Mur2 SINE Alu 1 149 0 9 923 219 186 0 0 chr9 44361502 44361545 -79714627 + GA-rich Low_complexity Low_complexity 5 47 0 9 923 833 232 91 8 chr9 44361563 44361814 -79714358 + B4A SINE B4 1 289 -3 9 923 289 264 32 106 chr9 44361881 44362004 -79714168 + ID_B1 SINE B4 41 154 -70 9 923 594 179 114 0 chr9 44362009 44362132 -79714040 + B1F SINE Alu 9 145 -4 9 923 246 316 129 63 chr9 44362466 44362846 -79713326 - MER74B LTR ERVL -130 428 76 9 923 1023 24 8 0 chr9 44362742 44362868 -79713304 + B1_Mus1 SINE Alu 22 148 0 9 923 1250 59 18 0 chr9 44362870 44363040 -79713132 + (GGAGAA)n Simple_repeat Simple_repeat 3 175 0 9 923 1073 234 108 26 chr9 44363313 44363664 -79712508 - RMER5 LTR ERV1 -6 528 149 9 923 279 176 139 12 chr9 44364026 44364112 -79712060 - RMER5 LTR ERV1 -405 129 33 9 923 682 327 51 76 chr9 44364346 44364819 -79711353 - ERVL-E-int LTR ERVL -4896 771 311 9 923 322 257 14 0 chr9 44364955 44365025 -79711147 - ID SINE ID -150 74 4 9 923 1314 91 11 0 chr9 44365151 44365326 -79710846 + B2_Mm1t SINE B2 3 179 -14 9 923 345 88 310 26 chr9 44365388 44365504 -79710668 + B2_Mm2 SINE B2 47 195 0 9 923 833 196 0 7 chr9 44365537 44365681 -79710491 + RSINE1 SINE B4 2 144 -21 9 923 744 50 0 0 chr9 44365685 44365786 -79710386 + (CA)n Simple_repeat Simple_repeat 2 102 0 9 923 580 231 27 7 chr9 44365839 44365987 -79710185 + L1M2 LINE L1 3622 3772 -2371 9 923 248 301 21 41 chr9 44365992 44366089 -79710083 + ID_B1 SINE B4 85 179 -45 9 923 361 289 132 9 chr9 44366127 44366353 -79709819 + L1M2 LINE L1 3714 3992 -2148 9 923 233 299 18 27 chr9 44366353 44366463 -79709709 + ID_B1 SINE B4 68 176 -48 9 923 550 168 0 0 chr9 44366370 44366477 -79709695 + PB1D9 SINE Alu 6 112 -8 9 923 692 109 125 8 chr9 44366623 44366734 -79709438 + B1_Mus2 SINE Alu 10 135 -12 9 923 284 0 28 0 chr9 44366734 44366770 -79709402 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 9 923 351 249 157 6 chr9 44366781 44366947 -79709225 + L1M2 LINE L1 4169 4359 -1781 9 923 988 237 65 23 chr9 44366986 44367249 -79708923 + B4 SINE B4 1 274 -18 9 923 983 128 7 13 chr9 44367310 44367461 -79708711 - B1_Mur4 SINE Alu 0 150 1 9 923 3975 62 0 12 chr9 44367511 44368021 -79708151 + L1Md_F2 LINE L1 6078 6581 -1 9 923 897 301 59 25 chr9 44368246 44368638 -79707534 - L1M2 LINE L1 -1329 4814 4410 9 923 765 129 89 0 chr9 44368714 44368838 -79707334 + B1_Mur2 SINE Alu 14 148 -1 9 923 1421 272 54 40 chr9 44368861 44369340 -79706832 + RCHARR1 DNA MER1_type 55 540 -434 9 923 1581 52 5 0 chr9 44369344 44369536 -79706636 + B2_Mm1a SINE B2 1 193 0 9 923 762 174 72 0 chr9 44369560 44369698 -79706474 + B1_Mur1 SINE Alu 2 149 0 9 923 601 302 44 43 chr9 44369704 44370048 -79706124 + L1M2 LINE L1 5476 5818 -356 9 923 490 279 37 98 chr9 44370072 44370196 -79705976 + RSINE1 SINE B4 13 127 -38 9 923 387 0 0 0 chr9 44370196 44370239 -79705933 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 9 923 490 279 37 98 chr9 44370239 44370277 -79705895 + RSINE1 SINE B4 128 165 0 9 923 340 202 11 77 chr9 44370479 44370570 -79705602 + PB1D9 SINE Alu 36 120 0 9 923 988 119 28 0 chr9 44370632 44370775 -79705397 - B1_Mus2 SINE Alu 0 147 1 9 923 497 227 73 0 chr9 44370801 44370911 -79705261 - B1_Mur4 SINE Alu -15 135 18 9 923 721 202 67 6 chr9 44371137 44371301 -79704871 - LTR33C LTR ERVL -451 178 5 9 923 232 267 158 53 chr9 44371359 44371454 -79704718 + U13_ snRNA snRNA 1 105 -3 9 923 571 169 144 0 chr9 44371520 44371638 -79704534 - B1_Mur4 SINE Alu -14 136 2 9 923 648 214 53 0 chr9 44371842 44371973 -79704199 + B1_Mur1 SINE Alu 2 139 -10 9 923 181 128 43 0 chr9 44371973 44372020 -79704152 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 9 923 778 97 80 8 chr9 44372064 44372189 -79703983 - B1_Mm SINE Alu 0 147 14 9 923 201 74 0 0 chr9 44372280 44372307 -79703865 + (TCCG)n Simple_repeat Simple_repeat 2 28 0 9 923 433 208 198 8 chr9 44372558 44372679 -79703493 + B1F1 SINE Alu 5 148 -1 9 923 239 351 39 0 chr9 44372712 44372789 -79703383 + ID4 SINE ID 4 83 0 9 923 237 262 49 12 chr9 44372827 44372908 -79703264 + Charlie11 DNA MER1_type 1724 1807 -389 9 923 290 222 41 14 chr9 44373008 44373081 -79703091 - ID4_ SINE ID -4 79 5 9 923 502 212 175 68 chr9 44373851 44374028 -79702144 - B3A SINE B2 -2 196 1 9 923 358 336 26 13 chr9 44374092 44374206 -79701966 + B1F SINE Alu 1 111 -6 9 923 240 305 0 24 chr9 44374210 44374294 -79701878 + ID4 SINE ID 2 83 0 1 923 842 209 0 0 chr9 44375091 44375230 -79700942 + B1_Mur2 SINE Alu 1 139 -10 1 923 234 293 27 0 chr9 44375501 44375576 -79700596 + ID4 SINE ID 3 79 -4 1 923 440 18 0 17 chr9 44375657 44375715 -79700457 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 923 254 293 37 0 chr9 44375786 44375868 -79700304 - B4A SINE B4 -199 93 9 1 923 815 190 0 0 chr9 44376626 44376763 -79699409 + B1_Mus1 SINE Alu 1 137 -11 1 923 189 0 0 0 chr9 44376763 44376784 -79699388 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 923 699 215 13 46 chr9 44376941 44377092 -79699080 + B1F SINE Alu 3 148 -1 1 923 180 0 0 0 chr9 44377169 44377189 -79698983 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 923 638 306 20 45 chr9 44377222 44377424 -79698748 + B3A SINE B2 1 197 -1 1 923 734 210 7 35 chr9 44377461 44377591 -79698581 + B1_Mur1 SINE Alu 11 140 -9 1 923 252 0 0 0 chr9 44377591 44377619 -79698553 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 923 734 210 7 35 chr9 44377619 44377631 -79698541 + B1_Mur1 SINE Alu 141 149 0 1 923 361 121 58 43 chr9 44377734 44377803 -79698369 - PB1D9 SINE Alu 0 120 51 1 923 367 237 28 51 chr9 44378012 44378190 -79697982 - L1M5 LINE L1 -642 5482 5309 1 923 710 0 0 0 chr9 44378331 44378416 -79697756 + L1Md_T LINE L1 6498 6582 0 1 923 186 43 0 0 chr9 44378421 44378444 -79697728 + (A)n Simple_repeat Simple_repeat 1 23 0 1 923 704 245 22 0 chr9 44378633 44378686 -79697486 + ID SINE ID 27 82 -142 1 923 366 295 9 62 chr9 44378686 44378798 -79697374 + PB1D10 SINE Alu 1 106 -11 1 923 387 0 0 0 chr9 44378798 44378841 -79697331 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 1 923 516 276 172 0 chr9 44379938 44380072 -79696100 + RSINE1 SINE B4 9 165 0 1 923 198 0 0 0 chr9 44380072 44380094 -79696078 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 923 508 232 10 23 chr9 44380113 44380238 -79695934 + MTD LTR MaLR 1 123 -296 1 923 700 206 155 26 chr9 44380258 44380452 -79695720 + MTD LTR MaLR 200 418 -1 1 923 1147 195 5 40 chr9 44380615 44380839 -79695333 + B3 SINE B2 1 216 0 1 923 772 135 0 38 chr9 44380856 44380987 -79695185 + B1_Mus2 SINE Alu 22 147 0 1 923 1389 66 16 27 chr9 44381106 44381293 -79694879 + B2_Mm2 SINE B2 2 186 -9 1 923 285 333 159 0 chr9 44381433 44381571 -79694601 + MIRb SINE MIR 51 210 -58 1 923 244 291 35 11 chr9 44381613 44381700 -79694472 + RSINE1 SINE B4 3 91 -74 1 923 210 37 0 0 chr9 44381854 44381881 -79694291 - B3A SINE B2 -170 28 2 1 923 481 213 39 11 chr9 44381894 44382028 -79694144 - B1_Mus1 SINE Alu 0 150 6 1 923 944 171 193 0 chr9 44382059 44382240 -79693932 - B3 SINE B2 0 216 1 1 923 530 288 58 83 chr9 44382290 44382534 -79693638 + L1ME3A LINE L1 5583 5818 -422 1 923 1436 82 0 5 chr9 44382534 44382719 -79693453 + B2_Mm2 SINE B2 3 186 -9 1 923 530 289 71 83 chr9 44382719 44382826 -79693346 + L1ME3A LINE L1 5819 5940 -300 1 923 461 233 116 8 chr9 44382870 44382991 -79693181 + B1F1 SINE Alu 14 147 -2 1 923 183 292 31 185 chr9 44383581 44383711 -79692461 + L2a LINE L2 3296 3405 -21 1 923 415 278 26 9 chr9 44383711 44383827 -79692345 - PB1D7 SINE Alu -2 118 1 1 923 433 300 92 8 chr9 44383873 44384004 -79692168 - ID_B1 SINE B4 -2 222 81 1 923 1226 54 0 0 chr9 44384363 44384510 -79691662 - B1_Mm SINE Alu 0 147 1 1 923 466 237 96 18 chr9 44384804 44384950 -79691222 - ID_B1 SINE B4 -43 249 91 1 923 381 331 0 37 chr9 44385001 44385136 -79691036 + MIR SINE MIR 7 136 -126 1 923 399 237 53 86 chr9 44385341 44385423 -79690749 + ORR1E LTR MaLR 1 82 -277 1 923 1539 78 0 0 chr9 44385423 44385616 -79690556 - B2_Mm1t SINE B2 0 193 1 1 923 399 237 53 86 chr9 44385616 44385685 -79690487 + ORR1E LTR MaLR 83 147 -212 1 923 261 305 12 24 chr9 44385736 44385820 -79690352 - ID2 SINE ID 0 83 1 1 923 240 35 0 0 chr9 44385825 44385854 -79690318 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 1 923 810 197 0 0 chr9 44385854 44385991 -79690181 - B1_Mur1 SINE Alu -12 137 1 1 923 23 33 0 0 chr9 44386000 44386030 -79690142 + AT_rich Low_complexity Low_complexity 1 30 0 1 923 394 293 54 48 chr9 44386030 44386177 -79689995 - RSINE1 SINE B4 -6 159 12 1 923 1143 69 7 0 chr9 44386206 44386351 -79689821 - B1_Mus2 SINE Alu 0 147 2 1 923 347 222 416 78 chr9 44386368 44386501 -79689671 - B4 SINE B4 -59 233 62 1 923 1604 47 0 10 chr9 44386501 44386696 -79689476 - B2_Mm1a SINE B2 0 193 1 1 923 255 330 79 99 chr9 44386696 44386751 -79689421 - B4 SINE B4 -231 61 1 1 923 250 183 107 53 chr9 44386833 44386908 -79689264 + U5 snRNA snRNA 1 79 -37 1 923 503 219 148 86 chr9 44387122 44387332 -79688840 + ID_B1 SINE B4 2 224 0 1 923 190 169 51 0 chr9 44387341 44387400 -79688772 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 1 923 834 123 0 0 chr9 44387871 44388001 -79688171 + (TTC)n Simple_repeat Simple_repeat 1 130 0 1 923 310 153 27 14 chr9 44388001 44388074 -79688098 + C-rich Low_complexity Low_complexity 5 78 0 1 923 680 217 41 14 chr9 44388086 44388231 -79687941 - B1_Mur3 SINE Alu 0 149 1 1 923 445 243 9 61 chr9 44388754 44388868 -79687304 + B3 SINE B2 20 127 -89 1 923 1009 193 35 5 chr9 44388939 44389142 -79687030 + B3 SINE B2 8 216 0 1 923 705 235 6 41 chr9 44389202 44389371 -79686801 - RSINE1 SINE B4 0 165 3 1 923 484 263 59 0 chr9 44389412 44389530 -79686642 - ID_B1 SINE B4 -4 220 96 1 923 1120 112 84 134 chr9 44390288 44390526 -79685646 - URR1A DNA MER1_type 0 226 1 1 923 730 137 84 0 chr9 44390827 44390958 -79685214 + B1_Mur1 SINE Alu 8 149 0 1 923 441 156 0 0 chr9 44390958 44391035 -79685137 + A-rich Low_complexity Low_complexity 1 77 0 1 923 1796 168 17 11 chr9 44391143 44391492 -79684680 - ORR1B2 LTR MaLR 0 367 17 1 923 895 79 0 0 chr9 44391494 44391620 -79684552 - B1_Mus1 SINE Alu 0 148 23 1 923 590 286 76 76 chr9 44391707 44391998 -79684174 - B4A SINE B4 0 292 2 1 923 844 238 5 20 chr9 44392023 44392220 -79683952 - B3A SINE B2 -4 194 1 1 923 219 69 0 0 chr9 44392333 44392362 -79683810 + (CGTG)n Simple_repeat Simple_repeat 2 30 0 1 923 334 256 54 22 chr9 44392382 44392474 -79683698 - B1F SINE Alu -54 95 1 1 923 1183 20 0 27 chr9 44392765 44392915 -79683257 + B1_Mus1 SINE Alu 2 147 -1 1 923 686 194 0 2 chr9 44393069 44393200 -79682972 - B1_Mur2 SINE Alu 0 149 19 1 923 253 333 0 0 chr9 44393574 44393655 -79682517 + RSINE1 SINE B4 51 131 -34 1 923 208 0 62 0 chr9 44393694 44393726 -79682446 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 923 21 0 0 0 chr9 44393730 44393751 -79682421 + AT_rich Low_complexity Low_complexity 1 21 0 1 923 2387 144 28 35 chr9 44393794 44394136 -79682036 - MTC LTR MaLR 0 421 83 1 923 1115 54 123 23 chr9 44394136 44394307 -79681865 - B2_Mm2 SINE B2 -6 189 2 1 923 2387 144 28 35 chr9 44394307 44394388 -79681784 - MTC LTR MaLR -339 82 1 1 923 578 204 331 0 chr9 44394535 44394692 -79681480 - B3 SINE B2 -6 210 2 1 923 755 303 79 12 chr9 44394735 44395076 -79681096 - Lx8 LINE L1 -198 7275 6912 1 923 686 309 52 27 chr9 44395076 44395405 -79680767 + MER57C2 LTR ERV1 92 428 -6 1 923 360 0 0 0 chr9 44395453 44395493 -79680679 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 923 309 259 8 92 chr9 44395843 44395962 -79680210 - B1_Mur1 SINE Alu 0 149 41 1 923 264 77 0 0 chr9 44396053 44396092 -79680080 + (T)n Simple_repeat Simple_repeat 1 39 0 1 923 1196 41 7 0 chr9 44396389 44396534 -79679638 - B1_Mm SINE Alu 0 147 2 1 923 250 291 75 75 chr9 44396574 44396760 -79679412 - L1MC4a LINE L1 -421 7621 7418 1 923 401 250 276 20 chr9 44397277 44397473 -79678699 - RMER21B LTR ERV1 -275 567 322 1 923 1657 31 0 20 chr9 44397507 44397703 -79678469 - B2_Mm1a SINE B2 0 193 2 1 923 768 77 0 0 chr9 44397780 44397884 -79678288 + (TTCC)n Simple_repeat Simple_repeat 2 105 0 1 923 1036 106 5 5 chr9 44397884 44398103 -79678069 + (TTC)n Simple_repeat Simple_repeat 1 219 0 1 923 626 35 0 12 chr9 44398106 44398192 -79677980 + (TC)n Simple_repeat Simple_repeat 2 86 0 1 923 420 76 99 25 chr9 44398194 44398275 -79677897 - B1_Mur3 SINE Alu -1 148 62 1 923 832 101 56 35 chr9 44398275 44398419 -79677753 - B1_Mur3 SINE Alu 0 149 3 1 923 318 235 78 39 chr9 44398419 44398439 -79677733 - B1F2 SINE Alu -88 61 43 1 923 656 242 0 0 chr9 44398457 44398585 -79677587 - ID_B1 SINE B4 -3 221 94 1 923 617 85 32 11 chr9 44398618 44398713 -79677459 - B1_Mur2 SINE Alu -7 142 46 1 923 247 319 36 60 chr9 44399068 44399235 -79676937 - HAL1 LINE L1 -2173 334 172 1 923 321 215 23 43 chr9 44399304 44399399 -79676773 - PB1D7 SINE Alu -19 101 9 1 923 604 295 16 155 chr9 44399663 44399980 -79676192 - B4A SINE B4 -18 274 2 1 923 685 180 53 23 chr9 44400419 44400550 -79675622 + B1_Mus1 SINE Alu 1 135 -13 1 923 1151 217 222 12 chr9 44400609 44401033 -79675139 + RMER15 LTR ERVL 62 574 -1 1 923 187 373 0 0 chr9 44401397 44401472 -79674700 + L2c LINE L2 3077 3151 -236 1 923 398 265 0 0 chr9 44401545 44401628 -79674544 + B1F2 SINE Alu 27 109 -40 1 923 266 220 106 35 chr9 44401713 44401798 -79674374 - MER53 DNA hAT -78 115 25 1 923 251 231 115 0 chr9 44401734 44401812 -79674360 + MER53 DNA hAT 107 193 0 1 923 575 298 96 9 chr9 44401880 44402110 -79674062 + MER2 DNA MER2_type 7 256 -89 1 923 450 309 50 0 chr9 44402428 44402567 -79673605 + B4A SINE B4 79 224 -68 1 923 1512 78 5 0 chr9 44402572 44402764 -79673408 + B2_Mm1t SINE B2 1 193 0 1 923 1181 74 0 0 chr9 44402764 44402911 -79673261 + B1_Mus1 SINE Alu 1 148 0 1 923 924 96 29 0 chr9 44402939 44403075 -79673097 + B1_Mur4 SINE Alu 6 145 -5 1 923 503 244 42 99 chr9 44402943 44403134 -79673038 + B4A SINE B4 94 273 -19 1 923 414 228 9 38 chr9 44403592 44403697 -79672475 + B1_Mur1 SINE Alu 48 149 0 1 923 290 26 26 0 chr9 44403976 44404015 -79672157 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 923 1561 57 0 10 chr9 44404015 44404211 -79671961 - B2_Mm2 SINE B2 0 195 2 1 923 1106 113 11 0 chr9 44404215 44404392 -79671780 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 923 215 0 67 0 chr9 44404485 44404515 -79671657 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 923 856 53 0 0 chr9 44404517 44404631 -79671541 - B1_Mus2 SINE Alu -6 141 28 1 923 2551 131 5 3 chr9 44404631 44405006 -79671166 - Lx4A LINE L1 -82 6976 6601 1 923 692 233 38 43 chr9 44405233 44405417 -79670755 - B3 SINE B2 -27 189 7 1 923 2397 86 50 119 chr9 44405898 44406360 -79669812 + RLTR23 LTR ERV1 1 430 0 1 923 450 261 29 65 chr9 44406559 44406698 -79669474 - RSINE1 SINE B4 -27 138 5 1 923 338 308 0 25 chr9 44407453 44407573 -79668599 + PB1D10 SINE Alu 1 117 0 1 923 437 179 301 36 chr9 44407598 44407761 -79668411 + B3 SINE B2 10 216 0 1 923 180 0 0 0 chr9 44408010 44408030 -79668142 + (G)n Simple_repeat Simple_repeat 1 20 0 1 923 219 25 0 70 chr9 44408065 44408108 -79668064 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 1 923 525 159 158 9 chr9 44408416 44408530 -79667642 + B1_Mur2 SINE Alu 6 136 -13 1 923 297 75 0 0 chr9 44408530 44408570 -79667602 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 1 923 1197 68 0 0 chr9 44408619 44408767 -79667405 + B1_Mus1 SINE Alu 1 148 0 1 923 635 226 113 26 chr9 44409439 44409634 -79666538 - B3 SINE B2 0 216 5 1 923 693 224 52 17 chr9 44409797 44409970 -79666202 - B2_Mm2 SINE B2 -16 179 1 1 923 599 157 56 0 chr9 44409992 44410100 -79666072 - B1_Mur1 SINE Alu -15 134 21 1 923 290 267 41 151 chr9 44410265 44410437 -79665735 + B4 SINE B4 71 223 -69 1 923 717 126 31 16 chr9 44410313 44410442 -79665730 + B1_Mur4 SINE Alu 20 150 0 1 923 201 306 16 0 chr9 44410450 44410512 -79665660 + GA-rich Low_complexity Low_complexity 2 64 0 1 923 1507 33 50 0 chr9 44410561 44410741 -79665431 + B2_Mm2 SINE B2 1 189 -6 1 923 32 26 0 0 chr9 44410741 44410780 -79665392 + AT_rich Low_complexity Low_complexity 1 39 0 1 923 1168 56 21 0 chr9 44410785 44410929 -79665243 + B1_Mus1 SINE Alu 2 148 0 1 923 597 207 95 0 chr9 44410966 44411135 -79665037 + B3 SINE B2 32 216 0 1 923 653 121 135 16 chr9 44411163 44411289 -79664883 + B1_Mur4 SINE Alu 2 142 -8 1 923 647 246 118 71 chr9 44411502 44411799 -79664373 - MER89 LTR ERV1 -23 536 226 1 923 222 91 0 0 chr9 44412506 44412539 -79663633 + (TCCG)n Simple_repeat Simple_repeat 2 34 0 1 923 232 87 27 55 chr9 44412837 44412910 -79663262 + (CGG)n Simple_repeat Simple_repeat 2 72 0 1 923 243 0 0 0 chr9 44414999 44415026 -79661146 + (T)n Simple_repeat Simple_repeat 1 27 0 1 923 403 284 25 17 chr9 44415953 44416071 -79660101 - PB1D7 SINE Alu 0 120 2 1 923 182 37 37 0 chr9 44416073 44416100 -79660072 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 923 631 285 86 20 chr9 44416185 44416382 -79659790 - B3 SINE B2 -4 212 3 1 923 375 177 122 20 chr9 44416429 44416527 -79659645 + PB1D9 SINE Alu 3 110 -10 1 923 396 40 0 0 chr9 44416563 44416613 -79659559 + (T)n Simple_repeat Simple_repeat 1 50 0 1 923 377 119 218 9 chr9 44416613 44416723 -79659449 - B1_Mur4 SINE Alu 0 150 18 1 923 354 267 40 79 chr9 44416726 44416852 -79659320 - B1F2 SINE Alu -17 132 12 1 923 339 276 57 57 chr9 44417209 44417332 -79658840 - B1F SINE Alu 0 149 27 1 923 379 218 99 0 chr9 44417405 44417506 -79658666 + PB1D9 SINE Alu 10 120 0 1 923 673 102 246 0 chr9 44417512 44417630 -79658542 + B1_Mus1 SINE Alu 2 148 0 1 923 394 226 66 57 chr9 44417990 44418112 -79658060 - B1_Mur1 SINE Alu -8 141 19 1 923 831 167 226 0 chr9 44418871 44419039 -79657133 + B3 SINE B2 1 206 -10 1 923 1254 27 0 13 chr9 44419067 44419216 -79656956 + B1_Mus1 SINE Alu 2 148 0 1 923 1680 31 0 0 chr9 44419461 44419653 -79656519 - B2_Mm1a SINE B2 0 193 2 1 923 461 248 47 16 chr9 44419704 44419831 -79656341 - ID_B1 SINE B4 0 224 94 1 923 267 323 50 10 chr9 44419973 44420073 -79656099 - PB1 SINE Alu -1 126 23 1 923 1344 80 37 0 chr9 44420409 44420597 -79655575 - B2_Mm2 SINE B2 0 195 1 1 923 300 287 26 53 chr9 44421057 44421171 -79655001 - PB1D10 SINE Alu 0 117 7 1 923 29 0 0 0 chr9 44421182 44421211 -79654961 + AT_rich Low_complexity Low_complexity 1 29 0 1 923 1593 53 0 0 chr9 44421217 44421404 -79654768 - B2_Mm1a SINE B2 -5 188 2 1 923 642 111 0 53 chr9 44421589 44421703 -79654469 - B1_Mur3 SINE Alu 0 149 42 1 923 833 181 35 0 chr9 44422471 44422615 -79653557 + B1_Mur3 SINE Alu 1 149 0 1 923 242 226 282 12 chr9 44422638 44422723 -79653449 - B3 SINE B2 -9 207 100 1 923 411 100 0 0 chr9 44422772 44422842 -79653330 + (CAGA)n Simple_repeat Simple_repeat 2 71 0 1 923 976 248 24 0 chr9 44423110 44423316 -79652856 - B3 SINE B2 -5 211 1 1 923 360 243 157 35 chr9 44423336 44423451 -79652721 - RSINE1 SINE B4 -36 129 1 1 923 745 248 52 19 chr9 44423451 44423661 -79652511 - ID_B1 SINE B4 -3 221 5 1 923 460 117 0 203 chr9 44424108 44424161 -79652011 + URR1B DNA MER1_type 132 174 -51 1 923 1184 62 0 0 chr9 44424161 44424307 -79651865 - B1_Mus2 SINE Alu 0 147 2 1 923 460 117 0 203 chr9 44424307 44424371 -79651801 + URR1B DNA MER1_type 175 225 0 1 923 544 230 70 21 chr9 44424424 44424566 -79651606 - B1_Mur2 SINE Alu 0 149 1 1 923 432 0 0 0 chr9 44424567 44424615 -79651557 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 923 287 260 0 52 chr9 44424618 44424695 -79651477 - ID_B1 SINE B4 -8 216 144 1 923 330 312 9 27 chr9 44424843 44424955 -79651217 - PB1D10 SINE Alu -7 110 1 1 923 556 218 112 8 chr9 44424992 44425126 -79651046 - B1_Mus1 SINE Alu 0 148 1 1 923 623 214 92 41 chr9 44425188 44425383 -79650789 - B3 SINE B2 -10 206 2 1 923 229 250 185 19 chr9 44425417 44425573 -79650599 - B3 SINE B2 -3 213 11 1 923 683 190 9 9 chr9 44425696 44425843 -79650329 - B1F SINE Alu -1 147 1 1 923 380 319 229 17 chr9 44425855 44426091 -79650081 - B4 SINE B4 -5 287 2 1 923 1024 55 0 20 chr9 44426399 44426548 -79649624 - B2_Mm2 SINE B2 -3 192 47 1 923 1288 85 28 0 chr9 44426599 44426775 -79649397 - B2_Mm2 SINE B2 -14 181 1 1 923 358 276 109 121 chr9 44426802 44427041 -79649131 - B4A SINE B4 -16 276 41 1 923 304 296 49 0 chr9 44427151 44427232 -79648940 - B1F1 SINE Alu -62 87 3 1 923 234 0 0 0 chr9 44428218 44428244 -79647928 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 923 490 236 158 33 chr9 44428256 44428440 -79647732 + ID_B1 SINE B4 1 207 -17 1 923 1285 105 17 0 chr9 44428910 44429091 -79647081 + B2_Mm2 SINE B2 1 184 -11 1 923 404 172 112 45 chr9 44429701 44429835 -79646337 + B3A SINE B2 1 143 -55 1 923 182 151 0 36 chr9 44429850 44429905 -79646267 + (CAGAGA)n Simple_repeat Simple_repeat 4 56 0 1 923 1255 75 35 51 chr9 44429927 44430124 -79646048 - B2_Mm2 SINE B2 -1 194 1 1 923 245 301 0 24 chr9 44430627 44430712 -79645460 - ID4_ SINE ID 0 83 1 1 923 1904 143 20 0 chr9 44430770 44431070 -79645102 + Lx4A LINE L1 6675 6980 -78 1 923 23 0 0 0 chr9 44431092 44431115 -79645057 + AT_rich Low_complexity Low_complexity 1 23 0 1 923 216 275 123 38 chr9 44431340 44431446 -79644726 - PB1D9 SINE Alu 0 120 6 1 923 416 305 144 38 chr9 44432796 44432956 -79643216 - B3A SINE B2 -21 177 1 1 923 780 224 0 0 chr9 44432998 44433145 -79643027 - B1_Mus1 SINE Alu 0 148 2 1 923 830 248 42 9 chr9 44433171 44433383 -79642789 + ID_B1 SINE B4 1 219 -5 1 924 411 181 10 69 chr9 44433504 44433605 -79642567 - PB1D9 SINE Alu 0 120 26 1 924 432 221 96 0 chr9 44434846 44434950 -79641222 + B1_Mur1 SINE Alu 36 149 0 1 924 358 267 28 28 chr9 44435436 44435544 -79640628 - PB1D10 SINE Alu -9 108 1 1 924 507 149 78 78 chr9 44435990 44436092 -79640080 - PB1D9 SINE Alu -1 119 18 1 924 716 93 0 27 chr9 44436272 44436383 -79639789 - B1_Mus2 SINE Alu 0 147 40 1 924 799 120 14 14 chr9 44436922 44437066 -79639106 + (TTTCC)n Simple_repeat Simple_repeat 2 145 0 1 924 201 111 0 0 chr9 44437066 44437093 -79639079 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 924 354 271 145 25 chr9 44437231 44437390 -79638782 - MER82 DNA MER2_type -31 622 445 1 924 394 291 141 101 chr9 44437457 44437702 -79638470 - MER82 DNA MER2_type -311 342 72 1 924 453 265 45 70 chr9 44437702 44437901 -79638271 - B3A SINE B2 -4 194 1 1 924 394 291 141 101 chr9 44437901 44437961 -79638211 - MER82 DNA MER2_type -582 71 25 1 924 1282 88 43 5 chr9 44438478 44438643 -79637529 + B2_Mm1t SINE B2 1 173 -20 1 924 222 37 0 0 chr9 44438643 44438670 -79637502 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 924 1282 88 43 5 chr9 44438670 44438688 -79637484 + B2_Mm1t SINE B2 174 191 -2 1 924 280 313 0 0 chr9 44438728 44438795 -79637377 + ID_B1 SINE B4 143 209 -15 1 924 297 0 0 0 chr9 44438983 44439016 -79637156 + (T)n Simple_repeat Simple_repeat 1 33 0 1 924 466 274 253 24 chr9 44439046 44439338 -79636834 - Tigger7 DNA MER2_type 0 2491 2133 1 924 562 238 32 71 chr9 44440228 44440382 -79635790 - B1_Mur1 SINE Alu 0 149 2 1 924 777 191 10 78 chr9 44440418 44440622 -79635550 - B3A SINE B2 -6 192 3 1 924 317 154 0 0 chr9 44441282 44441334 -79634838 + PB1D7 SINE Alu 68 119 -1 1 924 250 281 93 34 chr9 44441528 44441646 -79634526 + B1F2 SINE Alu 10 134 -15 1 924 257 340 52 0 chr9 44441855 44441952 -79634220 + PB1D10 SINE Alu 11 112 -5 1 924 234 0 0 0 chr9 44442143 44442169 -79634003 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 924 270 247 0 99 chr9 44442441 44442522 -79633650 - PB1D10 SINE Alu -8 109 37 1 924 1103 76 21 0 chr9 44442627 44442772 -79633400 - B1_Mus1 SINE Alu 0 148 1 1 924 299 262 0 80 chr9 44442830 44442942 -79633230 + B1_Mur1 SINE Alu 35 137 -12 1 924 305 262 0 15 chr9 44442964 44443030 -79633142 + PB1D10 SINE Alu 1 65 -52 1 924 237 278 0 0 chr9 44443092 44443146 -79633026 + B3A SINE B2 59 112 -86 1 924 296 216 552 12 chr9 44443359 44443524 -79632648 - MER2 DNA MER2_type -1 344 92 1 924 381 313 20 18 chr9 44444138 44444290 -79631882 - ID_B1 SINE B4 -3 221 73 1 924 393 58 0 0 chr9 44445553 44445605 -79630567 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 924 208 143 0 0 chr9 44447211 44447246 -79628926 + (T)n Simple_repeat Simple_repeat 1 35 0 1 924 201 39 0 0 chr9 44447614 44447640 -79628532 + (GGGTG)n Simple_repeat Simple_repeat 4 29 0 1 924 897 80 16 0 chr9 44449271 44449396 -79626776 - B1_Mus1 SINE Alu 0 148 22 1 924 425 238 100 71 chr9 44449274 44449414 -79626758 - B4 SINE B4 -69 223 80 1 924 189 0 0 0 chr9 44449415 44449436 -79626736 + (T)n Simple_repeat Simple_repeat 1 21 0 1 924 947 158 93 60 chr9 44449481 44449696 -79626476 - URR1B DNA MER1_type -3 222 1 1 924 251 260 71 30 chr9 44449827 44449926 -79626246 - PB1D10 SINE Alu -2 115 13 1 924 516 81 0 0 chr9 44450018 44450092 -79626080 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 924 3632 35 33 0 chr9 44450687 44451109 -79625063 - RLTR10C LTR ERVK 0 436 1 1 924 683 178 8 8 chr9 44451237 44451356 -79624816 + B1_Mus2 SINE Alu 9 127 -20 1 924 448 233 105 0 chr9 44451452 44451585 -79624587 + ERVL-E-int LTR ERVL 4764 4910 -757 1 924 484 244 42 0 chr9 44451786 44451905 -79624267 - PB1 SINE Alu -3 124 1 1 924 1139 62 0 14 chr9 44452011 44452158 -79624014 + B1_Mm SINE Alu 3 147 0 1 924 350 274 53 141 chr9 44452296 44452308 -79623864 - B4 SINE B4 -69 223 215 1 924 830 190 194 6 chr9 44452308 44452488 -79623684 - B3 SINE B2 0 216 3 1 924 656 195 16 33 chr9 44452488 44452597 -79623575 - B1_Mur2 SINE Alu -12 137 28 1 924 350 274 53 141 chr9 44452597 44452645 -79623527 - B4 SINE B4 -78 214 69 1 924 202 164 18 18 chr9 44452691 44452747 -79623425 + CT-rich Low_complexity Low_complexity 3 58 0 1 924 727 200 74 0 chr9 44453052 44453187 -79622985 + URR1B DNA MER1_type 1 145 -80 1 924 2474 131 54 0 chr9 44453251 44453641 -79622531 - MTC LTR MaLR -10 411 1 1 924 227 353 50 16 chr9 44453763 44453884 -79622288 - MIRb SINE MIR -39 229 105 1 924 568 195 147 62 chr9 44454762 44454864 -79621308 - Lx9 LINE L1 -1 7643 7546 1 924 399 41 0 0 chr9 44454864 44454913 -79621259 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 924 1225 48 0 0 chr9 44454915 44455061 -79621111 - B1_Mm SINE Alu -1 146 1 1 924 568 195 147 62 chr9 44455061 44455104 -79621068 - Lx9 LINE L1 -99 7545 7504 1 924 261 0 0 0 chr9 44455104 44455133 -79621039 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 924 568 195 147 62 chr9 44455133 44455207 -79620965 - Lx9 LINE L1 -141 7503 7402 1 924 845 265 104 15 chr9 44455273 44455541 -79620631 + B4A SINE B4 1 292 0 1 924 213 130 65 0 chr9 44455636 44455682 -79620490 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 1 924 578 135 0 33 chr9 44455682 44455774 -79620398 - B1_Mus2 SINE Alu -1 146 58 1 924 404 226 113 0 chr9 44455924 44456030 -79620142 + B1F SINE Alu 32 149 0 1 924 498 230 113 14 chr9 44456044 44456185 -79619987 + B3A SINE B2 13 167 -31 1 924 425 221 82 74 chr9 44456187 44456309 -79619863 + MT2B LTR ERVL 156 278 -323 1 924 1069 39 0 0 chr9 44456207 44456336 -79619836 + B1_Mus1 SINE Alu 20 148 0 1 924 207 191 0 0 chr9 44456343 44456390 -79619782 + A-rich Low_complexity Low_complexity 1 47 0 1 924 1420 70 16 0 chr9 44456390 44456575 -79619597 + B2_Mm2 SINE B2 3 190 -5 1 924 435 217 145 65 chr9 44456614 44456752 -79619420 + B1_Mur2 SINE Alu 1 149 0 1 924 503 263 122 22 chr9 44458382 44458562 -79617610 + B4A SINE B4 39 236 -56 1 924 318 258 314 0 chr9 44460459 44460653 -79615519 - Lx8 LINE L1 -284 7189 6935 1 924 312 252 16 130 chr9 44460701 44460824 -79615348 + MT2B LTR ERVL 149 257 -344 1 924 711 212 7 21 chr9 44460730 44460870 -79615302 + B1_Mur3 SINE Alu 10 147 -2 1 924 751 237 80 27 chr9 44460871 44461096 -79615076 - Lx8 LINE L1 -620 6853 6617 1 924 263 250 0 0 chr9 44461101 44461161 -79615011 - Lx8 LINE L1 -968 6505 6446 1 924 703 288 47 30 chr9 44462138 44462371 -79613801 + MTD LTR MaLR 1 237 -182 1 924 383 150 0 0 chr9 44462374 44462434 -79613738 + ID_B1 SINE B4 164 223 -1 1 924 1145 108 0 0 chr9 44462438 44462586 -79613586 + B1_Mus1 SINE Alu 1 148 0 1 924 1102 37 15 0 chr9 44462674 44462808 -79613364 + B2_Mm2 SINE B2 1 136 -59 1 924 343 118 50 3 chr9 44463638 44463712 -79612460 - B1_Mur4 SINE Alu -17 103 28 1 924 1976 130 53 42 chr9 44463850 44464201 -79611971 - MYSERV6-int LTR ERVK -2026 6933 6578 1 924 839 10 0 10 chr9 44464201 44464302 -79611870 + (TAG)n Simple_repeat Simple_repeat 1 100 0 1 924 321 26 0 0 chr9 44464310 44464348 -79611824 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 924 3032 62 2 112 chr9 44464406 44464602 -79611570 + MTB_Mm LTR MaLR 2 190 -217 1 924 1181 44 0 0 chr9 44464602 44464737 -79611435 + B1_Mm SINE Alu 1 135 -12 1 924 3032 62 2 112 chr9 44464737 44464996 -79611176 + MTB_Mm LTR MaLR 191 407 0 1 924 236 167 0 59 chr9 44464996 44465047 -79611125 - RLTR11B LTR ERVK -404 49 2 1 924 3520 146 25 21 chr9 44465051 44465680 -79610492 - MYSERV6-int LTR ERVK -3329 5630 4999 1 924 295 284 62 0 chr9 44465687 44465768 -79610404 - PB1D9 SINE Alu -23 97 12 1 924 3518 127 58 68 chr9 44465768 44466506 -79609666 - MYSERV6-int LTR ERVK -3964 4995 4265 1 924 3499 97 2 4 chr9 44466535 44467020 -79609152 + ORR1A2-int LTR MaLR 1480 1963 0 1 924 2108 95 3 0 chr9 44467020 44467305 -79608867 + ORR1A2 LTR MaLR 1 286 -41 1 924 1174 88 75 37 chr9 44467305 44467456 -79608716 + B2_Mm2 SINE B2 1 156 -39 1 924 279 0 0 0 chr9 44467456 44467487 -79608685 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 924 1174 88 75 37 chr9 44467487 44467523 -79608649 + B2_Mm2 SINE B2 157 195 0 1 924 1207 75 0 0 chr9 44467524 44467670 -79608502 + B1_Mus1 SINE Alu 1 146 -2 1 924 3866 120 101 11 chr9 44467700 44468314 -79607858 + RLTR33 LTR ERVK 7 675 -3 1 924 4576 116 23 30 chr9 44468316 44469108 -79607064 - MYSERV6-int LTR ERVK -5335 3624 2839 1 924 1231 21 0 0 chr9 44469125 44469267 -79606905 - B2_Mm1a SINE B2 -51 142 1 1 924 3293 83 35 12 chr9 44469267 44469778 -79606394 - MYSERV6-int LTR ERVK -6107 2852 2330 1 924 1251 92 6 6 chr9 44469779 44469794 -79606378 - B2_Mm1a SINE B2 -18 175 161 1 924 348 24 0 0 chr9 44469794 44469835 -79606337 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 924 1251 92 6 6 chr9 44469835 44469993 -79606179 - B2_Mm1a SINE B2 -33 160 2 1 924 2282 158 92 32 chr9 44470018 44470488 -79605684 - RLTR19 LTR ERVK -1 498 1 1 924 355 143 32 0 chr9 44470488 44470551 -79605621 - RLTR19-int LTR ERVK 0 6137 6073 1 924 6230 122 50 64 chr9 44470548 44471625 -79604547 - RLTR19-int LTR ERVK -1593 4544 3509 1 924 390 21 0 0 chr9 44471625 44471672 -79604500 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 924 6230 122 50 64 chr9 44471672 44471743 -79604429 - RLTR19-int LTR ERVK -2629 3508 3414 1 924 342 0 0 0 chr9 44472645 44472683 -79603489 + (T)n Simple_repeat Simple_repeat 1 38 0 1 924 785 179 69 39 chr9 44472922 44473155 -79603017 - RLTR19-int LTR ERVK -2765 3372 3133 1 924 1624 117 86 8 chr9 44473163 44473431 -79602741 - RMER6B LTR ERVK -124 337 49 1 924 776 40 10 0 chr9 44473739 44473839 -79602333 + (TTTC)n Simple_repeat Simple_repeat 4 104 0 1 924 574 107 53 0 chr9 44473842 44473992 -79602180 + (TCTA)n Simple_repeat Simple_repeat 1 158 0 1 924 1287 120 5 0 chr9 44473992 44474176 -79601996 - B2_Mm1a SINE B2 -8 185 1 1 924 607 182 26 24 chr9 44474183 44474322 -79601850 - B3 SINE B2 -19 176 37 1 924 2126 116 94 220 chr9 44474322 44474476 -79601696 - RLTR41 LTR ERV1 0 446 296 1 924 1160 68 0 13 chr9 44474476 44474626 -79601546 - B1_Mus1 SINE Alu 0 148 1 1 924 2126 116 94 220 chr9 44474626 44474981 -79601191 - RLTR41 LTR ERV1 -151 295 1 1 924 944 274 20 17 chr9 44475084 44475427 -79600745 - RLTR6-int LTR ERV1 -93 7685 7021 1 924 1635 336 69 44 chr9 44475695 44475902 -79600270 - MuRRS4-int LTR ERV1 -1971 5635 5430 1 924 1251 111 22 0 chr9 44475902 44476083 -79600089 - B2_Mm2 SINE B2 -6 189 5 1 924 1999 282 88 56 chr9 44476083 44477479 -79598693 - MuRRS4-int LTR ERV1 -2177 5429 2911 1 924 960 333 65 52 chr9 44477509 44478463 -79597709 - MuRRS4-int LTR ERV1 -5216 2562 1597 1 924 1599 31 0 35 chr9 44478479 44478682 -79597490 - MTA_Mm LTR MaLR 0 396 201 1 924 377 100 83 0 chr9 44478671 44478731 -79597441 + MTB LTR MaLR 336 400 0 1 924 316 339 75 8 chr9 44478800 44478998 -79597174 - MuRRS4-int LTR ERV1 -6310 1468 1145 1 924 289 291 57 50 chr9 44479430 44479589 -79596583 - MuRRS4-int LTR ERV1 -6794 762 603 1 924 261 275 0 28 chr9 44480166 44480196 -79595976 - B3A SINE B2 -129 69 42 1 924 2683 132 11 62 chr9 44480196 44480666 -79595506 - RLTR41 LTR ERV1 0 446 1 1 924 261 275 0 28 chr9 44480666 44480706 -79595466 - B3A SINE B2 -157 41 2 1 924 210 264 77 46 chr9 44481762 44481876 -79594296 + MIR SINE MIR 41 149 -59 1 924 344 97 30 61 chr9 44482514 44482580 -79593592 + B1_Mur3 SINE Alu 86 149 0 1 924 312 254 0 14 chr9 44482596 44482668 -79593504 - MER77 LTR ERVL -128 479 409 1 924 324 316 0 21 chr9 44482752 44482849 -79593323 - MER77 LTR ERVL -373 234 140 1 924 281 303 62 56 chr9 44483389 44483462 -79592710 + MER77 LTR ERVL 444 523 -84 1 924 910 106 57 0 chr9 44483462 44483603 -79592569 + B1_Mur3 SINE Alu 1 149 0 1 924 281 303 62 56 chr9 44483603 44483690 -79592482 + MER77 LTR ERVL 524 605 -2 1 924 444 286 130 56 chr9 44483690 44483836 -79592336 + MER21B LTR ERV1 559 720 -143 1 924 515 262 11 62 chr9 44483956 44484135 -79592037 + ID_B1 SINE B4 54 223 -1 1 924 902 117 0 28 chr9 44483999 44484140 -79592032 + B1_Mur4 SINE Alu 14 150 0 1 924 612 237 0 0 chr9 44484265 44484396 -79591776 + B3A SINE B2 1 131 -67 1 924 207 0 0 0 chr9 44484454 44484477 -79591695 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 924 891 189 27 69 chr9 44484539 44484727 -79591445 + ID_B1 SINE B4 43 222 -2 1 924 262 312 40 40 chr9 44484868 44485018 -79591154 + MER21-int LTR ERV1 1961 2110 -2081 1 924 691 264 74 16 chr9 44485293 44485482 -79590690 + ID_B1 SINE B4 6 205 -19 1 924 1390 74 17 0 chr9 44485575 44485751 -79590421 + B2_Mm2 SINE B2 1 179 -16 1 924 657 0 0 0 chr9 44485769 44485842 -79590330 + (GAA)n Simple_repeat Simple_repeat 3 75 0 1 924 266 319 31 52 chr9 44486177 44486273 -79589899 + MER21B LTR ERV1 606 699 -164 1 924 198 0 0 0 chr9 44486318 44486340 -79589832 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 924 525 182 148 1 chr9 44486340 44486452 -79589720 - B1_Mur2 SINE Alu -11 138 13 1 924 1004 148 31 47 chr9 44486453 44486645 -79589527 + B2_Mm2 SINE B2 3 191 -4 1 924 1083 206 28 9 chr9 44486685 44486896 -79589276 - B3 SINE B2 0 216 2 1 924 342 0 0 0 chr9 44487408 44487446 -79588726 + (GGGA)n Simple_repeat Simple_repeat 2 39 0 1 924 354 275 73 62 chr9 44487980 44488134 -79588038 + PB1D10 SINE Alu 1 149 0 1 924 189 0 0 0 chr9 44488137 44488158 -79588014 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1 924 405 240 2 36 chr9 44488171 44488271 -79587901 + PB1D9 SINE Alu 39 131 -19 1 924 939 236 20 5 chr9 44488429 44488625 -79587547 - B3 SINE B2 -16 200 2 1 924 671 238 13 13 chr9 44488729 44488878 -79587294 - B1_Mur2 SINE Alu 0 149 1 1 924 688 183 16 23 chr9 44488918 44489047 -79587125 + B1_Mur2 SINE Alu 11 138 -11 1 924 300 65 31 46 chr9 44492158 44492223 -79583949 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 1 924 225 94 0 0 chr9 44495111 44495143 -79581029 + (GGA)n Simple_repeat Simple_repeat 1 32 0 1 924 718 69 473 0 chr9 44497056 44497187 -79578985 + B2_Mm2 SINE B2 1 193 -2 1 924 618 157 120 0 chr9 44497327 44497435 -79578737 + B1_Mur1 SINE Alu 23 143 -6 1 924 448 286 142 24 chr9 44497692 44497903 -79578269 - B4A SINE B4 -56 236 1 1 924 348 261 0 33 chr9 44498099 44498190 -79577982 + ID_B1 SINE B4 137 224 0 1 924 1146 66 0 0 chr9 44498194 44498331 -79577841 + B1_Mus2 SINE Alu 1 137 -10 1 924 279 21 20 40 chr9 44498331 44498381 -79577791 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 924 313 278 78 0 chr9 44498489 44498579 -79577593 + ID_B1 SINE B4 3 99 -125 1 924 432 0 0 0 chr9 44498642 44498690 -79577482 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 924 559 207 35 18 chr9 44498690 44498803 -79577369 + ID_B1 SINE B4 109 223 -1 1 924 224 114 45 0 chr9 44499032 44499076 -79577096 + G-rich Low_complexity Low_complexity 2 47 0 1 924 187 362 110 39 chr9 44500628 44500783 -79575389 + MIRb SINE MIR 72 237 -31 1 924 1232 74 0 0 chr9 44501000 44501149 -79575023 - B1_Mur3 SINE Alu 0 149 1 2 924 399 73 0 0 chr9 44501874 44501929 -79574243 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 3 924 484 214 80 9 chr9 44502717 44502830 -79573342 + RSINE1 SINE B4 5 125 -40 4 924 738 249 83 39 chr9 44503286 44503491 -79572681 - B3 SINE B2 0 216 3 5 924 769 200 28 0 chr9 44503523 44503668 -79572504 - B1_Mur2 SINE Alu 0 149 1 6 924 217 364 9 18 chr9 44504379 44504491 -79571681 + MIRm SINE MIR 66 176 -100 7 924 751 163 49 14 chr9 44504571 44504714 -79571458 - B1_Mur1 SINE Alu -1 148 1 8 924 730 213 154 0 chr9 44504729 44504898 -79571274 - B3A SINE B2 -3 195 1 9 924 455 181 0 12 chr9 44505303 44505387 -79570785 - PB1D9 SINE Alu 0 120 38 1 924 330 386 6 25 chr9 44508082 44508244 -79567928 + MIR3 SINE MIR 43 201 -7 1 924 313 347 0 34 chr9 44509171 44509350 -79566822 + G-rich Low_complexity Low_complexity 3 175 0 1 924 371 269 0 21 chr9 44512823 44512918 -79563254 - B1F SINE Alu -24 125 33 1 924 256 301 43 0 chr9 44512942 44513035 -79563137 - PB1 SINE Alu -3 124 28 1 924 643 218 201 28 chr9 44513108 44513287 -79562885 + B3 SINE B2 1 210 -6 1 924 189 0 0 0 chr9 44513316 44513337 -79562835 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 924 208 222 0 0 chr9 44514322 44514358 -79561814 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 924 865 218 36 78 chr9 44514803 44515022 -79561150 - B3 SINE B2 -6 210 1 1 924 280 288 15 0 chr9 44515545 44515611 -79560561 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 1 924 288 102 0 0 chr9 44517389 44517438 -79558734 + (CCA)n Simple_repeat Simple_repeat 3 51 0 2 924 252 0 0 0 chr9 44517937 44517965 -79558207 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 924 520 190 16 72 chr9 44520157 44520282 -79555890 + B1_Mur1 SINE Alu 32 149 0 2 924 939 90 90 0 chr9 44520479 44520613 -79555559 + B1_Mur4 SINE Alu 1 146 -4 2 924 390 267 9 19 chr9 44522077 44522184 -79553988 + RSINE1 SINE B4 25 130 -35 2 924 471 18 0 0 chr9 44522202 44522258 -79553914 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 924 344 301 82 0 chr9 44522296 44522442 -79553730 + ID_B1 SINE B4 66 223 -1 2 924 323 300 0 0 chr9 44522469 44522549 -79553623 + ID4_ SINE ID 2 81 -2 2 924 456 272 35 9 chr9 44522807 44522922 -79553250 + B4A SINE B4 107 224 -68 2 924 898 120 29 29 chr9 44522928 44523065 -79553107 + B1_Mus1 SINE Alu 2 138 -10 2 924 255 95 29 87 chr9 44523109 44523178 -79552994 + B4A SINE B4 228 292 0 3 924 257 303 77 7 chr9 44524847 44524984 -79551188 + MIR SINE MIR 8 153 -55 3 924 222 306 219 43 chr9 44526700 44526864 -79549308 + MIRc SINE MIR 44 236 -32 3 924 572 245 116 26 chr9 44526889 44527078 -79549094 + B3 SINE B2 9 214 -2 3 924 299 271 19 9 chr9 44529534 44529642 -79546530 + GA-rich Low_complexity Low_complexity 2 110 0 3 924 965 199 73 5 chr9 44530306 44530498 -79545674 + B3 SINE B2 4 208 -8 3 924 255 103 0 0 chr9 44530533 44530572 -79545600 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3 924 471 82 0 0 chr9 44533986 44534059 -79542113 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 3 924 226 292 0 27 chr9 44534580 44534654 -79541518 + C-rich Low_complexity Low_complexity 2 73 0 3 924 759 234 40 55 chr9 44535843 44536042 -79540130 + B3A SINE B2 3 198 0 3 924 207 128 25 25 chr9 44537367 44537391 -79538781 + polypyrimidine Low_complexity Low_complexity 19 42 0 4 924 1175 75 0 0 chr9 44537391 44537538 -79538634 - B1_Mm SINE Alu 0 147 1 4 924 207 128 25 25 chr9 44537538 44537553 -79538619 + polypyrimidine Low_complexity Low_complexity 3 18 0 4 924 1553 53 0 5 chr9 44537569 44537759 -79538413 + B2_Mm1a SINE B2 2 190 -3 4 924 457 200 384 25 chr9 44537759 44537918 -79538254 - B3 SINE B2 0 216 1 4 924 402 74 0 0 chr9 44538142 44538196 -79537976 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 924 658 263 0 22 chr9 44538269 44538405 -79537767 + B1_Mur3 SINE Alu 2 134 -15 4 924 315 200 183 39 chr9 44538430 44538534 -79537638 - ID_B1 SINE B4 -56 168 50 4 924 448 219 97 45 chr9 44538601 44538735 -79537437 - B1F SINE Alu -6 143 3 4 924 657 247 186 25 chr9 44538971 44539208 -79536964 - B4A SINE B4 -16 276 2 4 924 331 340 47 0 chr9 44539211 44539317 -79536855 + L1MB7 LINE L1 6046 6156 -28 5 924 1256 48 0 0 chr9 44539352 44539498 -79536674 + B1_Mus1 SINE Alu 3 148 0 5 924 981 67 19 51 chr9 44539515 44539673 -79536499 + B2_Mm1t SINE B2 27 179 -14 5 924 729 88 0 0 chr9 44539677 44539779 -79536393 + (GAAA)n Simple_repeat Simple_repeat 2 103 0 5 924 984 216 14 0 chr9 44539801 44540009 -79536163 + B3 SINE B2 6 216 0 5 924 428 184 198 58 chr9 44541352 44541473 -79534699 + ID_B1 SINE B4 84 221 -3 5 924 956 85 63 7 chr9 44543830 44543972 -79532200 + B1_Mur4 SINE Alu 1 150 0 5 924 378 0 0 0 chr9 44544481 44544523 -79531649 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 924 2114 158 108 31 chr9 44545801 44546244 -79529928 + RMER15 LTR ERVL 2 479 -96 5 924 1533 117 59 62 chr9 44546244 44546518 -79529654 + ORR1A4 LTR MaLR 3 282 -47 5 924 1456 53 21 26 chr9 44546518 44546711 -79529461 + B2_Mm1t SINE B2 2 193 0 6 924 1533 117 59 62 chr9 44546711 44546756 -79529416 + ORR1A4 LTR MaLR 283 321 -8 5 924 541 152 0 0 chr9 44546760 44546852 -79529320 + RMER15 LTR ERVL 481 572 -3 5 924 835 211 161 0 chr9 44547437 44547617 -79528555 + B3 SINE B2 1 209 -7 6 924 995 64 14 0 chr9 44547652 44547793 -79528379 - B1_Mus1 SINE Alu 0 148 6 6 924 425 194 0 134 chr9 44547696 44547815 -79528357 - MT2B LTR ERVL -344 257 155 6 924 804 161 73 0 chr9 44547822 44547959 -79528213 - B1_Mur3 SINE Alu 0 149 3 6 924 207 0 0 0 chr9 44547978 44548001 -79528171 + (CAAAC)n Simple_repeat Simple_repeat 1 23 0 6 924 307 335 149 23 chr9 44548031 44548205 -79527967 + B3A SINE B2 1 196 -2 6 924 1410 62 28 0 chr9 44548745 44548922 -79527250 - B2_Mm2 SINE B2 -9 186 5 6 924 575 184 10 0 chr9 44548932 44549035 -79527137 - PB1D9 SINE Alu 0 120 17 6 924 685 255 29 29 chr9 44549030 44549200 -79526972 - B3 SINE B2 -46 170 1 6 924 948 138 14 7 chr9 44549222 44549368 -79526804 - B1_Mus1 SINE Alu 0 148 2 7 924 313 212 150 0 chr9 44549376 44549456 -79526716 - B4A SINE B4 -200 92 1 7 924 567 190 20 0 chr9 44549515 44549615 -79526557 - B1F2 SINE Alu -46 103 2 7 924 1181 55 171 0 chr9 44549647 44549668 -79526504 - B2_Mm1a SINE B2 0 193 162 7 924 207 0 0 0 chr9 44549668 44549691 -79526481 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 924 1181 55 171 0 chr9 44549691 44549833 -79526339 - B2_Mm1a SINE B2 -32 161 3 7 924 189 0 0 0 chr9 44550662 44550683 -79525489 + (CTCTG)n Simple_repeat Simple_repeat 5 25 0 7 924 1092 83 0 27 chr9 44552473 44552622 -79523550 + B1_Mus2 SINE Alu 3 147 0 7 924 485 279 62 68 chr9 44552689 44552866 -79523306 - B3 SINE B2 0 216 41 7 924 236 220 0 92 chr9 44552847 44552912 -79523260 - B1_Mur4 SINE Alu -35 115 57 7 924 319 266 0 25 chr9 44552961 44553042 -79523130 + RSINE1 SINE B4 87 165 0 7 924 510 263 144 7 chr9 44553054 44553228 -79522944 - B3 SINE B2 0 198 1 8 924 497 175 0 40 chr9 44553264 44553365 -79522807 + B1_Mur1 SINE Alu 53 149 0 8 924 1232 41 7 7 chr9 44553999 44554147 -79522025 + B1_Mus1 SINE Alu 1 148 0 8 924 796 183 217 0 chr9 44554231 44554406 -79521766 - B3 SINE B2 -3 213 1 8 924 1166 54 0 39 chr9 44554636 44554789 -79521383 + B1_Mus1 SINE Alu 1 147 -1 8 924 279 259 133 11 chr9 44555356 44555446 -79520726 - PB1D10 SINE Alu 0 117 17 8 924 1868 134 16 76 chr9 44555478 44555793 -79520379 + ORR1B2 LTR MaLR 5 316 -51 8 924 759 184 73 22 chr9 44555793 44555971 -79520201 + B2_Mm2 SINE B2 1 187 -8 8 924 1868 134 16 76 chr9 44555971 44556025 -79520147 + ORR1B2 LTR MaLR 317 351 -16 8 924 1040 150 0 0 chr9 44556063 44556210 -79519962 + B1_Mur4 SINE Alu 2 148 -2 8 924 528 16 0 0 chr9 44556210 44556271 -79519901 + (GA)n Simple_repeat Simple_repeat 2 62 0 8 924 1617 32 5 0 chr9 44556387 44556576 -79519596 + B2_Mm1t SINE B2 1 190 -3 9 924 429 235 19 56 chr9 44556803 44556911 -79519261 - PB1D7 SINE Alu -14 106 3 9 924 439 180 79 10 chr9 44557323 44557424 -79518748 + PB1D9 SINE Alu 8 115 -5 9 924 1386 56 51 0 chr9 44557513 44557691 -79518481 + B2_Mm1t SINE B2 2 188 -5 9 924 364 293 81 0 chr9 44557846 44557945 -79518227 - PB1D10 SINE Alu -10 107 1 9 924 414 229 60 0 chr9 44557865 44557948 -79518224 - ID_B1 SINE B4 -58 166 79 9 924 360 128 222 50 chr9 44557975 44558074 -79518098 - B1_Mus2 SINE Alu 0 147 32 9 924 248 267 67 0 chr9 44558202 44558262 -79517910 + ID4 SINE ID 2 65 -18 9 924 905 106 106 0 chr9 44558629 44558761 -79517411 + B1_Mus1 SINE Alu 2 147 -1 9 924 594 75 0 0 chr9 44558762 44558842 -79517330 + (GAA)n Simple_repeat Simple_repeat 2 81 0 9 924 421 216 92 39 chr9 44558886 44559016 -79517156 + B3 SINE B2 76 212 -4 1 924 1198 56 0 0 chr9 44559107 44559251 -79516921 + B1_Mus2 SINE Alu 1 144 -3 1 924 399 283 130 7 chr9 44559489 44559635 -79516537 + RSINE1 SINE B4 2 165 0 1 924 699 234 203 11 chr9 44559705 44559882 -79516290 + ID_B1 SINE B4 4 214 -10 1 924 213 39 0 0 chr9 44559895 44559921 -79516251 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 1 924 27 0 0 0 chr9 44559979 44560006 -79516166 + AT_rich Low_complexity Low_complexity 1 27 0 1 924 502 278 40 54 chr9 44560402 44560626 -79515546 + ID_B1 SINE B4 3 223 -1 1 924 225 171 24 0 chr9 44560629 44560670 -79515502 + B2_Mm2 SINE B2 1 42 -153 1 924 186 103 0 0 chr9 44560813 44560842 -79515330 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1 924 622 188 23 93 chr9 44560888 44561017 -79515155 + B1_Mur1 SINE Alu 1 120 0 1 924 180 71 0 0 chr9 44561023 44561032 -79515140 + (T)n Simple_repeat Simple_repeat 1 9 0 1 924 981 53 104 8 chr9 44561032 44561166 -79515006 - B1_Mm SINE Alu 0 147 1 1 924 180 71 0 0 chr9 44561166 44561184 -79514988 + (T)n Simple_repeat Simple_repeat 1 18 0 1 924 2011 243 96 22 chr9 44561195 44561798 -79514374 + Lx8 LINE L1 6189 6836 -637 1 924 618 144 0 0 chr9 44561798 44561888 -79514284 + BGLII_B LTR ERVK 352 441 0 1 924 1397 197 77 63 chr9 44561957 44562336 -79513836 + ORR1C2 LTR MaLR 1 384 0 1 924 1586 32 5 21 chr9 44562372 44562565 -79513607 + B2_Mm1t SINE B2 2 191 -2 1 924 659 12 0 34 chr9 44562565 44562654 -79513518 + L1Md_T LINE L1 6497 6582 0 1 924 984 222 5 36 chr9 44562915 44563107 -79513065 - B3 SINE B2 -30 186 1 1 924 202 220 0 0 chr9 44563159 44563209 -79512963 + T-rich Low_complexity Low_complexity 1 50 0 1 924 706 254 0 56 chr9 44563465 44563644 -79512528 + B3A SINE B2 30 198 0 1 924 198 0 0 0 chr9 44563650 44563672 -79512500 + (T)n Simple_repeat Simple_repeat 1 22 0 1 924 1012 155 192 6 chr9 44563678 44563860 -79512312 + B3 SINE B2 1 216 0 1 924 23 0 0 0 chr9 44563864 44563887 -79512285 + AT_rich Low_complexity Low_complexity 1 23 0 1 924 436 266 28 0 chr9 44564348 44564368 -79511804 - PB1D10 SINE Alu -5 112 6 1 924 454 238 0 0 chr9 44564368 44564452 -79511720 - ID_B1 SINE B4 -54 170 87 1 925 271 256 37 37 chr9 44564659 44564740 -79511432 + ID4 SINE ID 1 81 -2 1 925 592 219 100 11 chr9 44564792 44564972 -79511200 + B3A SINE B2 2 197 -1 1 925 822 197 0 26 chr9 44564981 44565132 -79511040 + B1_Mur1 SINE Alu 3 149 0 1 925 1137 82 0 14 chr9 44565741 44565880 -79510292 + B1_Mus1 SINE Alu 1 139 -9 1 925 279 0 0 0 chr9 44565880 44565911 -79510261 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 925 883 186 112 10 chr9 44565940 44566136 -79510036 + B3 SINE B2 1 216 0 1 925 549 324 38 6 chr9 44566153 44566336 -79509836 + B3 SINE B2 26 214 -2 1 925 284 309 216 0 chr9 44567232 44567254 -79508918 + B1F SINE Alu 27 144 -5 1 925 400 253 0 0 chr9 44567254 44567329 -79508843 + ID_B1 SINE B4 145 219 -5 1 925 465 244 2 31 chr9 44567349 44567457 -79508715 + B3 SINE B2 2 108 -87 1 925 1483 63 32 0 chr9 44567523 44567712 -79508460 + B2_Mm2 SINE B2 1 195 0 1 925 225 264 57 0 chr9 44567808 44567861 -79508311 + ID4_ SINE ID 1 56 -27 1 925 234 156 0 0 chr9 44568527 44568572 -79507600 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1 925 569 227 118 22 chr9 44568709 44568844 -79507328 - RSINE1 SINE B4 -14 151 4 1 925 678 161 16 33 chr9 44569418 44569540 -79506632 - B1_Mus1 SINE Alu -1 147 28 1 925 226 242 161 0 chr9 44569784 44569846 -79506326 - ID4_ SINE ID -8 75 4 1 925 210 350 0 0 chr9 44569897 44569957 -79506215 - PB1D10 SINE Alu -44 73 14 1 925 266 146 83 0 chr9 44570019 44570067 -79506105 + ID_B1 SINE B4 110 161 -63 1 925 733 187 8 0 chr9 44570069 44570192 -79505980 + B1_Mur4 SINE Alu 1 124 -26 1 925 203 170 0 21 chr9 44570209 44570257 -79505915 + G-rich Low_complexity Low_complexity 3 49 0 1 925 784 189 41 20 chr9 44570331 44570477 -79505695 + B1_Mur2 SINE Alu 1 149 0 1 925 326 315 35 18 chr9 44570791 44570904 -79505268 - PB1D10 SINE Alu 0 117 3 1 925 353 349 0 9 chr9 44570810 44570920 -79505252 - ID_B1 SINE B4 -47 177 69 1 925 620 225 164 87 chr9 44570969 44571164 -79505008 + B3 SINE B2 1 210 -6 1 925 753 200 14 14 chr9 44571361 44571508 -79504664 + B1_Mur1 SINE Alu 1 147 -2 1 925 393 134 45 0 chr9 44571846 44571913 -79504259 + B1_Mus2 SINE Alu 3 72 -75 1 925 399 204 272 0 chr9 44571935 44572038 -79504134 - B1F2 SINE Alu -17 132 2 1 925 312 248 142 47 chr9 44572061 44572167 -79504005 + B3 SINE B2 64 179 -37 1 925 658 200 27 54 chr9 44572224 44572372 -79503800 + B1_Mur4 SINE Alu 2 145 -5 1 925 777 244 0 44 chr9 44572393 44572573 -79503599 + B3 SINE B2 39 210 -6 1 925 600 288 40 40 chr9 44572640 44572839 -79503333 + B4A SINE B4 1 199 -93 1 925 301 247 27 27 chr9 44573200 44573275 -79502897 + PB1D10 SINE Alu 38 112 -5 1 925 279 290 22 22 chr9 44573385 44573519 -79502653 + L1ME2z LINE L1 6287 6420 -24 1 925 1008 41 0 0 chr9 44573522 44573645 -79502527 + B1_Mm SINE Alu 25 147 0 1 925 347 264 49 98 chr9 44573523 44573666 -79502506 + B4A SINE B4 111 246 -46 1 925 208 342 0 0 chr9 44573935 44574008 -79502164 + (CATA)n Simple_repeat Simple_repeat 4 76 0 1 925 921 154 21 0 chr9 44574054 44574197 -79501975 - B1_Mus2 SINE Alu 0 147 2 1 925 329 210 19 49 chr9 44574369 44574473 -79501699 + B1_Mus2 SINE Alu 14 147 0 1 925 561 237 209 0 chr9 44574476 44574653 -79501519 + B3 SINE B2 1 214 -2 1 925 1759 0 5 0 chr9 44576098 44576289 -79499883 - B2_Mm1a SINE B2 0 193 2 1 925 790 158 15 29 chr9 44576482 44576619 -79499553 + B1_Mur3 SINE Alu 14 148 -1 1 925 244 261 206 8 chr9 44576624 44576755 -79499417 + L1MB7 LINE L1 5821 5977 -207 1 925 461 253 0 0 chr9 44576937 44577024 -79499148 - B3A SINE B2 -110 88 2 1 925 243 0 0 0 chr9 44577054 44577081 -79499091 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 925 243 260 0 0 chr9 44577083 44577133 -79499039 + B3A SINE B2 1 50 -148 1 925 242 354 80 20 chr9 44577209 44577455 -79498717 + MIRb SINE MIR 2 267 -1 1 925 592 242 17 0 chr9 44577508 44577628 -79498544 - B1_Mur1 SINE Alu -7 142 21 1 925 245 233 136 0 chr9 44577674 44577803 -79498369 + Lx5 LINE L1 5685 5871 -318 1 925 798 172 0 0 chr9 44577834 44577956 -79498216 - B1_Mus1 SINE Alu -14 134 13 1 925 332 239 99 0 chr9 44577974 44578045 -79498127 + B1F2 SINE Alu 1 78 -71 1 925 991 223 19 23 chr9 44578046 44578262 -79497910 + B3 SINE B2 2 216 0 1 925 568 141 10 20 chr9 44578263 44578364 -79497808 - B2_Mm2 SINE B2 -7 188 89 1 925 212 147 0 0 chr9 44578362 44578396 -79497776 - B3 SINE B2 -182 34 1 1 925 1317 20 0 0 chr9 44578446 44578594 -79497578 + B1_Mus1 SINE Alu 1 148 0 1 925 210 150 0 0 chr9 44578595 44578635 -79497537 + (A)n Simple_repeat Simple_repeat 1 40 0 1 925 885 200 194 0 chr9 44578635 44578815 -79497357 + B3 SINE B2 2 216 0 1 925 26 0 0 0 chr9 44578892 44578918 -79497254 + AT_rich Low_complexity Low_complexity 1 26 0 1 925 295 333 86 25 chr9 44578930 44579093 -79497079 + ID_B1 SINE B4 51 223 -1 1 925 397 254 107 38 chr9 44578968 44579099 -79497073 + B1F2 SINE Alu 10 149 0 1 925 735 109 0 0 chr9 44579105 44579206 -79496966 + B2_Mm2 SINE B2 2 102 -93 1 925 1677 37 0 0 chr9 44579228 44579419 -79496753 - B2_Mm1t SINE B2 -2 191 1 1 925 324 264 64 0 chr9 44579432 44579542 -79496630 + L1MA6 LINE L1 6174 6290 -10 1 925 611 202 7 31 chr9 44579575 44579751 -79496421 - B2_Mm2 SINE B2 -1 192 27 1 925 776 167 0 16 chr9 44579799 44579927 -79496245 - B1_Mm SINE Alu -10 137 12 1 925 3771 60 20 6 chr9 44579927 44580416 -79495756 - LTRIS2 LTR ERV1 0 564 69 1 925 29 0 0 0 chr9 44580448 44580477 -79495695 + AT_rich Low_complexity Low_complexity 1 29 0 1 925 594 254 7 47 chr9 44580477 44580626 -79495546 - ID_B1 SINE B4 0 224 82 1 925 226 184 41 0 chr9 44580636 44580685 -79495487 + MER53 DNA hAT 14 64 -129 1 925 319 0 43 21 chr9 44582128 44582175 -79493997 + (TTTAA)n Simple_repeat Simple_repeat 3 50 0 1 925 1219 138 0 42 chr9 44582197 44582409 -79493763 - B3 SINE B2 -11 205 3 1 925 225 94 0 0 chr9 44582539 44582571 -79493601 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1 925 1211 55 0 0 chr9 44582578 44582724 -79493448 - B1_Mm SINE Alu 0 147 2 1 925 806 179 14 0 chr9 44582755 44582900 -79493272 - B1_Mm SINE Alu 0 147 1 1 925 192 361 81 27 chr9 44582905 44583127 -79493045 - L2c LINE L2 -16 3371 3138 1 925 418 222 124 15 chr9 44583421 44583528 -79492644 - L1MB4 LINE L1 0 6180 6070 2 925 1613 186 98 20 chr9 44583528 44583874 -79492298 - ORR1D1 LTR MaLR 0 374 2 2 925 418 222 124 15 chr9 44583874 44583903 -79492269 - L1MB4 LINE L1 -111 6069 6029 2 925 987 156 0 0 chr9 44583906 44584047 -79492125 + B1_Mur2 SINE Alu 2 142 -7 2 925 936 43 0 0 chr9 44584082 44584199 -79491973 + B1_Mus2 SINE Alu 31 147 0 2 925 2258 92 6 6 chr9 44584305 44584624 -79491548 + ORR1A2 LTR MaLR 1 319 -8 2 925 771 262 59 18 chr9 44584629 44584901 -79491271 - L1MB4 LINE L1 -258 5922 5640 2 925 429 273 108 50 chr9 44585060 44585199 -79490973 - B1F SINE Alu 0 149 3 2 925 197 156 111 37 chr9 44585457 44585522 -79490650 - MIRc SINE MIR -104 158 90 2 925 272 83 0 20 chr9 44585723 44585772 -79490400 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 2 925 1281 20 0 0 chr9 44585775 44585921 -79490251 - B1_Mus2 SINE Alu 0 147 2 2 925 452 206 70 30 chr9 44585935 44586035 -79490137 - PB1D9 SINE Alu 0 120 17 2 925 922 235 40 63 chr9 44586081 44586430 -79489742 - RLTR15 LTR ERVK -18 341 1 2 925 595 174 0 0 chr9 44586430 44586520 -79489652 + B1_Mur4 SINE Alu 55 144 -6 2 925 23 33 0 0 chr9 44586544 44586574 -79489598 + AT_rich Low_complexity Low_complexity 1 30 0 2 925 1101 186 29 5 chr9 44587079 44587284 -79488888 + B3 SINE B2 2 211 -5 2 925 540 132 19 9 chr9 44587469 44587576 -79488596 + CT-rich Low_complexity Low_complexity 2 109 0 2 925 251 91 0 0 chr9 44587576 44587609 -79488563 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 2 925 795 148 8 24 chr9 44587638 44587763 -79488409 - B1_Mur4 SINE Alu 0 150 28 2 925 207 0 0 0 chr9 44587774 44587797 -79488375 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 925 1190 108 0 0 chr9 44587798 44587956 -79488216 - B2_Mm2 SINE B2 -37 158 1 2 925 317 176 0 0 chr9 44587956 44587997 -79488175 - B1_Mus1 SINE Alu -107 41 1 2 925 843 146 33 59 chr9 44588010 44588163 -79488009 - B1_Mur2 SINE Alu 0 149 1 2 925 527 268 54 23 chr9 44588206 44588336 -79487836 + RSINE1 SINE B4 3 136 -29 2 925 320 287 67 22 chr9 44588552 44588641 -79487531 - B1F SINE Alu -47 102 10 2 925 477 286 58 16 chr9 44588565 44588686 -79487486 - ID_B1 SINE B4 -60 164 39 2 925 535 110 0 0 chr9 44588701 44588774 -79487398 - B2_Mm2 SINE B2 -122 73 1 2 925 1418 79 16 11 chr9 44589191 44589382 -79486790 - B2_Mm2 SINE B2 -2 193 2 2 925 676 189 93 44 chr9 44589518 44589701 -79486471 - B3A SINE B2 -5 193 2 2 925 471 214 264 78 chr9 44589708 44589875 -79486297 - B3A SINE B2 0 198 1 2 925 23 54 0 0 chr9 44590953 44590990 -79485182 + AT_rich Low_complexity Low_complexity 1 37 0 2 925 462 255 28 0 chr9 44591004 44591110 -79485062 + PB1D10 SINE Alu 5 113 -4 2 925 613 242 8 0 chr9 44591120 44591244 -79484928 + RSINE1 SINE B4 8 132 -33 2 925 1035 221 20 0 chr9 44591383 44591578 -79484594 + B3 SINE B2 1 199 -17 2 925 252 243 47 164 chr9 44592649 44592711 -79483461 - L1MB8 LINE L1 0 6184 6140 2 925 659 204 244 23 chr9 44592711 44592887 -79483285 - B3 SINE B2 0 216 2 2 925 252 243 47 164 chr9 44592887 44592952 -79483220 - L1MB8 LINE L1 -45 6139 6072 2 925 212 296 42 0 chr9 44592970 44593041 -79483131 - ID4 SINE ID -8 75 2 2 925 542 286 156 31 chr9 44593099 44593452 -79482720 - L1MB8 LINE L1 -351 5827 5431 2 925 435 245 59 68 chr9 44593505 44593623 -79482549 - PB1D10 SINE Alu 0 117 1 2 925 228 148 0 47 chr9 44593644 44593708 -79482464 + CT-rich Low_complexity Low_complexity 4 64 0 2 925 642 195 25 0 chr9 44593726 44593844 -79482328 - B1_Mur3 SINE Alu 0 149 29 2 925 1573 226 77 3 chr9 44593888 44594278 -79481894 - MTD LTR MaLR 0 419 1 2 925 240 285 195 0 chr9 44595108 44595231 -79480941 - L1ME3A LINE L1 -65 6108 5962 2 925 283 241 19 0 chr9 44595278 44595332 -79480840 - ID4 SINE ID -15 68 14 2 925 208 241 17 17 chr9 44595651 44595710 -79480462 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 2 925 221 258 61 0 chr9 44595726 44595792 -79480380 - ID SINE ID -153 71 2 2 925 796 146 51 0 chr9 44595827 44595964 -79480208 - B1F SINE Alu -1 148 5 2 925 819 286 49 69 chr9 44596264 44596546 -79479626 - L1MA7 LINE L1 -464 5827 5498 2 925 270 0 0 0 chr9 44596546 44596576 -79479596 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 925 1107 53 0 0 chr9 44596576 44596709 -79479463 - B1_Mus2 SINE Alu -12 135 3 2 925 819 288 55 67 chr9 44596709 44596847 -79479325 - L1MA7 LINE L1 -735 5556 5388 2 925 239 137 59 0 chr9 44596916 44596967 -79479205 - B1_Mus2 SINE Alu -8 139 86 2 925 702 253 80 26 chr9 44597031 44597295 -79478877 - L1MA7 LINE L1 -1333 4810 4533 2 925 355 311 68 96 chr9 44597320 44597466 -79478706 - RSINE1 SINE B4 -22 143 2 2 925 644 208 16 23 chr9 44597474 44597602 -79478570 - B1_Mur1 SINE Alu -1 148 22 2 925 255 287 91 117 chr9 44597475 44597629 -79478543 - B4 SINE B4 -69 223 74 2 925 603 238 28 14 chr9 44598338 44598483 -79477689 - B1F1 SINE Alu -2 147 1 2 925 437 275 41 61 chr9 44599204 44599351 -79476821 - ID_B1 SINE B4 0 224 81 2 925 552 314 187 24 chr9 44599534 44599668 -79476504 + MER21B LTR ERV1 273 430 -433 2 925 359 293 90 0 chr9 44599668 44599801 -79476371 - B1F SINE Alu 0 149 5 2 925 552 314 187 24 chr9 44599801 44599960 -79476212 + MER21B LTR ERV1 431 614 -249 2 925 1139 62 0 0 chr9 44600103 44600248 -79475924 - B2_Mm2 SINE B2 -50 145 1 2 925 672 201 63 25 chr9 44600310 44600468 -79475704 + RSINE1 SINE B4 2 165 0 2 925 276 294 82 0 chr9 44600679 44600764 -79475408 - MER21B LTR ERV1 -501 362 271 2 925 231 277 29 78 chr9 44600915 44601017 -79475155 - L2 LINE L2 -828 2591 2495 2 925 335 188 0 115 chr9 44601369 44601447 -79474725 + U6 snRNA snRNA 39 107 0 2 925 281 135 19 0 chr9 44601533 44601585 -79474587 + GA-rich Low_complexity Low_complexity 2 54 0 2 925 520 224 105 105 chr9 44601619 44601819 -79474353 + ID_B1 SINE B4 23 222 -2 2 925 1329 105 5 5 chr9 44604870 44605061 -79471111 + B2_Mm1t SINE B2 3 193 0 2 925 834 196 5 118 chr9 44605086 44605289 -79470883 + B2_Mm2 SINE B2 2 181 -14 2 925 212 0 0 35 chr9 44605312 44605341 -79470831 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 925 1125 66 0 0 chr9 44605341 44605478 -79470694 - B1_Mus2 SINE Alu -9 138 2 2 925 662 206 20 93 chr9 44605478 44605628 -79470544 + B1_Mur4 SINE Alu 12 150 0 2 925 236 306 114 61 chr9 44605651 44605669 -79470503 + ZP3AR Satellite Satellite 47 87 -125 2 925 237 225 67 53 chr9 44605669 44605744 -79470428 + PB1D9 SINE Alu 41 116 -4 2 925 236 306 114 61 chr9 44605744 44605783 -79470389 + ZP3AR Satellite Satellite 88 185 -27 2 925 643 220 156 0 chr9 44605746 44605887 -79470285 + ID_B1 SINE B4 2 164 -60 2 925 233 241 146 67 chr9 44605825 44605914 -79470258 + PB1D10 SINE Alu 22 117 0 2 925 382 281 39 103 chr9 44605922 44606077 -79470095 + MIR SINE MIR 36 180 -82 2 925 276 316 31 21 chr9 44606086 44606183 -79469989 + ID_B1 SINE B4 79 176 -48 2 925 400 182 35 43 chr9 44606100 44606192 -79469980 + PB1D10 SINE Alu 17 106 -11 2 925 243 0 0 0 chr9 44607035 44607062 -79469110 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 2 925 470 341 76 36 chr9 44609195 44609420 -79466752 + MIR SINE MIR 25 258 -4 2 925 27 0 0 0 chr9 44612296 44612323 -79463849 + AT_rich Low_complexity Low_complexity 1 27 0 2 925 267 31 0 0 chr9 44612497 44612529 -79463643 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 925 224 132 0 54 chr9 44612684 44612740 -79463432 + T-rich Low_complexity Low_complexity 1 53 0 2 925 201 236 27 27 chr9 44615259 44615333 -79460839 + GA-rich Low_complexity Low_complexity 3 76 0 2 925 676 263 0 0 chr9 44616400 44616533 -79459639 - RSINE1 SINE B4 -21 144 12 2 925 270 290 77 39 chr9 44616538 44616642 -79459530 - PB1D10 SINE Alu -9 108 1 2 925 236 141 0 30 chr9 44616965 44617031 -79459141 + (CAG)n Simple_repeat Simple_repeat 1 64 0 2 925 339 0 39 19 chr9 44617289 44617341 -79458831 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 2 925 625 210 133 97 chr9 44617389 44617584 -79458588 - B3 SINE B2 -10 206 5 2 925 511 208 110 16 chr9 44618030 44618157 -79458015 - B1F SINE Alu -4 145 7 2 925 650 245 0 40 chr9 44618402 44618551 -79457621 - ID_B1 SINE B4 0 224 82 2 925 298 346 0 88 chr9 44618411 44618582 -79457590 + YREP_Mm Unknown Unknown 186 341 -1471 2 925 253 188 156 0 chr9 44619468 44619532 -79456640 - BC1_Mm scRNA scRNA -53 99 26 2 925 1366 195 217 54 chr9 44619608 44620069 -79456103 + RMER4B LTR ERVK 17 552 -33 2 925 201 74 0 0 chr9 44620119 44620146 -79456026 + (T)n Simple_repeat Simple_repeat 1 27 0 2 925 1209 41 0 27 chr9 44620146 44620296 -79455876 - B1_Mus2 SINE Alu 0 147 2 2 925 301 288 38 0 chr9 44620433 44620513 -79455659 + ID4_ SINE ID 1 83 0 2 925 185 0 40 0 chr9 44620521 44620546 -79455626 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2 925 326 217 35 46 chr9 44620856 44620943 -79455229 + L1MB8 LINE L1 6073 6158 -20 2 925 542 194 29 10 chr9 44621420 44621524 -79454648 + B1_Mur1 SINE Alu 42 147 -2 2 925 525 267 20 27 chr9 44621568 44621718 -79454454 - B1F SINE Alu 0 149 1 2 925 207 0 0 0 chr9 44621783 44621806 -79454366 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 925 582 184 135 8 chr9 44621818 44621944 -79454228 - B1_Mur4 SINE Alu -8 142 1 2 925 569 167 141 16 chr9 44622895 44623023 -79453149 + URR1B DNA MER1_type 1 144 -81 2 925 201 171 0 0 chr9 44623162 44623197 -79452975 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 925 279 277 58 29 chr9 44623330 44623434 -79452738 - MIRb SINE MIR -26 242 136 3 925 367 272 119 8 chr9 44623551 44623677 -79452495 + B1F1 SINE Alu 1 140 -9 3 925 508 275 0 48 chr9 44623945 44624077 -79452095 - B1F SINE Alu -1 148 28 3 925 504 248 62 0 chr9 44624495 44624608 -79451564 - B1F SINE Alu -28 121 2 3 925 311 236 0 111 chr9 44624608 44624636 -79451536 - B4A SINE B4 -206 86 68 3 925 230 313 76 47 chr9 44624962 44625133 -79451039 - B2_Mm2 SINE B2 -17 178 3 3 925 294 260 18 63 chr9 44625608 44625719 -79450453 + B2_Mm1t SINE B2 1 106 -87 3 925 362 245 148 40 chr9 44631032 44631181 -79444991 + RSINE1 SINE B4 1 165 0 3 925 395 271 0 40 chr9 44631971 44632071 -79444101 - B1_Mur3 SINE Alu -46 103 8 3 925 215 30 0 83 chr9 44632154 44632190 -79443982 - PB1D9 SINE Alu -3 117 85 3 925 352 285 7 20 chr9 44632211 44632317 -79443855 + PB1D10 SINE Alu 1 100 -49 3 925 21 0 0 0 chr9 44633073 44633094 -79443078 + AT_rich Low_complexity Low_complexity 1 21 0 3 925 875 230 138 48 chr9 44633094 44633428 -79442744 + L1MC1 LINE L1 5964 6327 -6 3 925 1089 178 111 149 chr9 44633976 44634365 -79441807 - MTC LTR MaLR -8 413 40 3 925 899 166 0 0 chr9 44635529 44635668 -79440504 + B1_Mus1 SINE Alu 1 139 -9 3 925 343 227 41 98 chr9 44635682 44635702 -79440470 + MT2B LTR ERVL 150 162 -439 3 925 799 139 86 21 chr9 44635702 44635842 -79440330 + B1_Mur3 SINE Alu 1 149 0 3 925 253 218 92 46 chr9 44635833 44635963 -79440209 + ORR1B1-int LTR MaLR 619 754 -755 3 925 1085 30 0 0 chr9 44635872 44636003 -79440169 + B1_Mm SINE Alu 17 147 0 3 925 480 35 0 0 chr9 44636031 44636089 -79440083 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 925 199 318 148 16 chr9 44636089 44636217 -79439955 - MIR SINE MIR -111 151 7 3 925 711 246 61 30 chr9 44636360 44636557 -79439615 + B3 SINE B2 1 203 -13 3 925 533 222 85 8 chr9 44636620 44636738 -79439434 + PB1 SINE Alu 1 127 0 3 925 429 245 31 0 chr9 44637538 44637636 -79438536 - PB1D10 SINE Alu -9 108 8 3 925 223 179 250 0 chr9 44637674 44637730 -79438442 + ID4_ SINE ID 4 73 -10 3 925 1172 48 14 0 chr9 44639649 44639794 -79436378 - B1_Mm SINE Alu 0 147 1 3 925 486 0 0 0 chr9 44639983 44640037 -79436135 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 925 1145 82 7 0 chr9 44640058 44640204 -79435968 + B1_Mus1 SINE Alu 2 148 0 3 925 343 225 121 22 chr9 44640532 44640623 -79435549 - B1F2 SINE Alu -47 102 3 3 925 609 225 115 7 chr9 44640638 44640777 -79435395 - B3 SINE B2 -62 154 1 3 925 666 120 415 12 chr9 44641246 44641405 -79434767 - URR1B DNA MER1_type 0 225 3 3 925 831 190 41 52 chr9 44641559 44641753 -79434419 + MTEa LTR MaLR 2 193 -186 3 925 258 105 26 0 chr9 44641773 44641811 -79434361 + MTEa LTR MaLR 269 307 -72 3 925 215 345 23 23 chr9 44642337 44642423 -79433749 + ID_B1 SINE B4 84 169 -55 3 925 263 201 163 102 chr9 44642711 44642877 -79433295 + RMER10A LTR ERVL 264 439 -3 3 925 219 204 20 0 chr9 44642992 44643041 -79433131 + B1F2 SINE Alu 5 54 -95 3 925 343 224 40 0 chr9 44643202 44643278 -79432894 - ID2 SINE ID -1 82 4 3 925 252 258 113 41 chr9 44643287 44643384 -79432788 - PB1D10 SINE Alu -1 116 13 3 925 668 221 22 14 chr9 44643601 44643739 -79432433 + B1_Mur3 SINE Alu 11 149 0 3 925 337 274 8 81 chr9 44644974 44644998 -79431174 + MT2B LTR ERVL 142 156 -445 3 925 561 187 35 9 chr9 44644998 44645111 -79431061 + PB1D9 SINE Alu 1 116 -4 3 925 22 0 0 0 chr9 44645156 44645178 -79430994 + AT_rich Low_complexity Low_complexity 1 22 0 3 925 366 190 45 99 chr9 44645420 44645531 -79430641 + PB1D10 SINE Alu 5 109 -8 3 925 482 218 99 11 chr9 44646364 44646545 -79429627 - B3A SINE B2 -1 197 1 3 925 372 261 11 21 chr9 44646554 44646648 -79429524 - PB1D9 SINE Alu -5 115 23 3 925 829 201 0 7 chr9 44646688 44646838 -79429334 - B1_Mur3 SINE Alu 0 149 1 3 925 212 333 75 38 chr9 44647102 44647147 -79429025 - B3A SINE B2 -76 122 15 3 925 345 220 0 0 chr9 44647147 44647206 -79428966 - ID4 SINE ID -10 73 15 3 925 317 229 57 0 chr9 44647203 44647273 -79428899 - B1F SINE Alu -39 110 37 3 925 262 232 28 42 chr9 44647211 44647283 -79428889 - MT2B2 LTR ERVL -329 255 185 3 925 939 229 19 0 chr9 44647491 44647701 -79428471 + B3 SINE B2 1 214 -2 3 925 1226 133 14 15 chr9 44647823 44648040 -79428132 + B2_Mm2 SINE B2 2 216 0 3 925 572 225 50 14 chr9 44648129 44648269 -79427903 - B1_Mur3 SINE Alu -2 147 3 3 925 180 0 0 0 chr9 44648410 44648430 -79427742 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 925 1124 102 0 0 chr9 44648430 44648566 -79427606 - B1_Mus2 SINE Alu -10 137 2 3 925 1498 68 16 0 chr9 44648755 44648946 -79427226 + B2_Mm2 SINE B2 1 194 -1 3 925 355 209 45 23 chr9 44649907 44649995 -79426177 + PB1D7 SINE Alu 23 112 -8 3 925 225 220 0 57 chr9 44649950 44650003 -79426169 + ID_B1 SINE B4 175 224 0 3 925 293 202 58 35 chr9 44651223 44651310 -79424862 - L1MC5 LINE L1 -44 7917 7829 3 925 229 295 66 0 chr9 44651479 44651540 -79424632 - RLTR22_Mur LTR ERVK -203 1645 1581 3 925 457 245 97 10 chr9 44651828 44651931 -79424241 - ID_B1 SINE B4 -9 215 104 3 925 251 299 39 0 chr9 44652193 44652270 -79423902 - ID4_ SINE ID -2 81 2 3 925 1252 34 0 0 chr9 44652321 44652468 -79423704 - B1_Mm SINE Alu 0 147 1 3 925 433 295 27 0 chr9 44652568 44652680 -79423492 - PB1D7 SINE Alu -1 119 5 3 925 241 231 123 0 chr9 44652944 44653009 -79423163 + ID4 SINE ID 3 75 -8 3 925 686 221 18 35 chr9 44653120 44653289 -79422883 - MER3 DNA MER1_type -9 200 35 3 925 1867 204 38 15 chr9 44654082 44654475 -79421697 + MTD LTR MaLR 12 413 -6 3 925 346 310 119 10 chr9 44654638 44654840 -79421332 + LTR16B2 LTR ERVL 218 441 -21 3 925 236 317 0 24 chr9 44655955 44656039 -79420133 + CT-rich Low_complexity Low_complexity 1 82 0 3 925 222 37 0 0 chr9 44658455 44658482 -79417690 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 925 312 262 0 48 chr9 44658571 44658655 -79417517 + PB1D10 SINE Alu 37 116 -1 3 925 557 236 39 8 chr9 44659108 44659236 -79416936 + B1F2 SINE Alu 1 132 -17 3 925 530 224 152 0 chr9 44659362 44659487 -79416685 + B1F SINE Alu 1 144 -5 3 925 180 98 214 24 chr9 44660073 44660115 -79416057 + L3 LINE CR1 3539 3588 -901 3 925 512 130 11 0 chr9 44661864 44661956 -79414216 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 925 797 232 29 72 chr9 44662275 44662317 -79413855 + B3 SINE B2 17 56 -160 3 925 456 19 0 0 chr9 44662317 44662370 -79413802 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 3 925 1461 50 22 0 chr9 44662371 44662550 -79413622 - B2_Mm2 SINE B2 -12 183 1 3 925 797 232 29 72 chr9 44662550 44662714 -79413458 + B3 SINE B2 57 216 0 3 925 534 146 0 0 chr9 44662740 44662836 -79413336 + L1_Mus3 LINE L1 6541 6636 -2 3 925 278 200 13 67 chr9 44662864 44662939 -79413233 + RLTR25B LTR ERVK 428 498 -530 3 925 575 167 0 0 chr9 44662881 44662971 -79413201 + B1_Mur3 SINE Alu 43 132 -17 3 925 540 219 108 8 chr9 44663824 44663944 -79412228 + B1_Mur2 SINE Alu 6 137 -12 3 925 204 40 0 0 chr9 44663971 44663996 -79412176 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 925 521 154 113 19 chr9 44664521 44664627 -79411545 - PB1D9 SINE Alu -3 117 2 3 925 559 262 0 24 chr9 44664993 44665142 -79411030 + PB1D9 SINE Alu 10 144 -5 3 925 738 259 24 12 chr9 44666416 44666584 -79409588 + B3A SINE B2 1 170 -28 3 925 603 176 20 0 chr9 44666621 44666723 -79409449 + B3A SINE B2 1 104 -94 3 925 315 0 0 0 chr9 44666736 44666771 -79409401 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 3 925 574 228 0 9 chr9 44667089 44667204 -79408968 - PB1D10 SINE Alu 0 117 4 3 925 470 323 31 12 chr9 44667239 44667399 -79408773 + RSINE1 SINE B4 3 165 0 3 925 332 231 0 44 chr9 44667454 44667522 -79408650 + ID4_ SINE ID 1 65 -18 3 925 396 271 90 23 chr9 44667566 44667776 -79408396 + L1M2 LINE L1 5432 5658 -642 3 925 758 141 319 0 chr9 44668144 44668307 -79407865 + B3 SINE B2 1 215 -1 3 925 562 322 26 7 chr9 44668425 44668578 -79407594 + B4 SINE B4 103 258 -34 3 925 216 305 29 87 chr9 44668964 44669068 -79407104 + B1F1 SINE Alu 11 108 -41 3 925 283 143 0 20 chr9 44669303 44669353 -79406819 + ORR1C2 LTR MaLR 45 93 -291 3 925 304 122 0 20 chr9 44669355 44669405 -79406767 + ORR1C2 LTR MaLR 45 93 -291 3 925 305 122 0 20 chr9 44669407 44669457 -79406715 + ORR1C2 LTR MaLR 45 93 -291 3 925 1497 183 91 28 chr9 44669459 44669779 -79406393 + ORR1C2 LTR MaLR 45 384 0 3 925 239 0 32 0 chr9 44669852 44669883 -79406289 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 3 925 688 243 90 6 chr9 44670009 44670187 -79405985 - B3A SINE B2 -3 195 3 3 925 278 236 41 14 chr9 44670620 44670693 -79405479 + ID4 SINE ID 1 75 -8 3 925 198 217 150 0 chr9 44670909 44670969 -79405203 - L2a LINE L2 -3 3423 3355 3 925 708 259 124 37 chr9 44671052 44671293 -79404879 - MTD LTR MaLR -156 263 2 4 925 350 235 23 12 chr9 44671303 44671389 -79404783 - MTC LTR MaLR 0 421 335 4 925 641 313 64 60 chr9 44671359 44671572 -79404600 + B4A SINE B4 7 224 -68 4 925 1125 152 16 5 chr9 44671572 44671764 -79404408 + B2_Mm2 SINE B2 2 195 0 4 925 641 313 64 60 chr9 44671764 44671815 -79404357 + B4A SINE B4 225 272 -20 4 925 687 141 98 8 chr9 44672364 44672486 -79403686 - B1F SINE Alu 0 149 17 4 925 381 362 104 30 chr9 44672827 44673191 -79402981 - L2 LINE L2 -632 2787 2397 4 925 220 205 0 64 chr9 44673212 44673259 -79402913 + MIRb SINE MIR 225 268 0 4 925 182 345 48 56 chr9 44673245 44673371 -79402801 - L2 LINE L2 -972 2447 2323 4 925 249 272 153 7 chr9 44673587 44673724 -79402448 - L2 LINE L2 -1450 1969 1813 4 925 230 288 135 14 chr9 44674001 44674075 -79402097 + PB1D10 SINE Alu 24 106 -11 4 925 438 160 175 8 chr9 44674131 44674251 -79401921 + B1_Mur1 SINE Alu 3 142 -7 4 925 230 0 33 0 chr9 44674253 44674283 -79401889 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 925 271 248 64 129 chr9 44675131 44675302 -79400870 + MT2B LTR ERVL 98 257 -344 4 925 567 229 92 0 chr9 44675201 44675332 -79400840 + ID_B1 SINE B4 80 222 -2 4 925 357 250 8 72 chr9 44675680 44675805 -79400367 - PB1D10 SINE Alu 0 117 1 4 925 378 61 0 0 chr9 44676291 44676340 -79399832 + (GGA)n Simple_repeat Simple_repeat 2 50 0 4 925 476 199 70 0 chr9 44676371 44676486 -79399686 + B1_Mur2 SINE Alu 4 128 -21 4 925 217 315 0 63 chr9 44677287 44677382 -79398790 - L2c LINE L2 -8 3379 3291 4 925 224 279 122 35 chr9 44677484 44677599 -79398573 - L3b LINE CR1 -161 321 197 4 925 243 322 44 101 chr9 44677821 44677855 -79398317 + B4 SINE B4 66 215 -77 4 925 440 232 18 55 chr9 44677855 44677980 -79398192 + B1_Mur2 SINE Alu 22 138 -11 4 925 891 256 49 49 chr9 44678046 44678334 -79397838 - B4A SINE B4 0 292 5 4 925 238 286 0 0 chr9 44679178 44679220 -79396952 - RSINE1 SINE B4 -18 147 106 4 925 546 127 68 10 chr9 44679244 44679347 -79396825 - B1_Mus1 SINE Alu 0 148 40 4 925 617 258 0 8 chr9 44679301 44679430 -79396742 - RSINE1 SINE B4 -36 129 2 4 925 781 230 47 21 chr9 44679469 44679660 -79396512 + B3 SINE B2 3 198 -18 4 925 261 0 0 0 chr9 44679682 44679711 -79396461 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 925 883 259 0 11 chr9 44679719 44679906 -79396266 - B3 SINE B2 -31 185 1 4 925 781 113 9 9 chr9 44679979 44680095 -79396077 - B1_Mur3 SINE Alu 0 149 34 4 925 721 183 50 0 chr9 44680439 44680559 -79395613 + B1_Mur3 SINE Alu 1 126 -23 4 925 686 271 71 48 chr9 44680961 44681213 -79394959 - MIR SINE MIR 0 262 5 4 925 631 303 33 7 chr9 44682926 44683079 -79393093 + RSINE1 SINE B4 1 157 -8 4 925 378 0 0 0 chr9 44684018 44684060 -79392112 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 925 320 311 68 0 chr9 44684251 44684354 -79391818 + PB1 SINE Alu 1 110 -17 4 925 227 396 0 78 chr9 44684523 44684638 -79391534 + MT2B LTR ERVL 134 239 -362 4 925 400 276 23 61 chr9 44684559 44684690 -79391482 + B1F2 SINE Alu 6 131 -18 4 925 201 241 0 0 chr9 44684717 44684771 -79391401 + GA-rich Low_complexity Low_complexity 2 55 0 4 925 595 233 0 16 chr9 44684859 44684981 -79391191 + PB1D9 SINE Alu 1 120 0 4 925 279 136 0 0 chr9 44686386 44686445 -79389727 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 925 181 262 176 9 chr9 44686768 44686876 -79389296 - L3 LINE CR1 -4353 136 11 4 925 195 42 0 0 chr9 44689161 44689185 -79386987 + (CCG)n Simple_repeat Simple_repeat 1 24 0 4 925 31 44 0 0 chr9 44689192 44689237 -79386935 + GC_rich Low_complexity Low_complexity 1 45 0 4 925 37 39 0 0 chr9 44689260 44689311 -79386861 + GC_rich Low_complexity Low_complexity 1 51 0 4 925 236 296 42 25 chr9 44689647 44689765 -79386407 + G-rich Low_complexity Low_complexity 1 120 0 4 925 200 316 0 17 chr9 44690971 44691029 -79385143 + G-rich Low_complexity Low_complexity 3 59 0 4 925 294 298 178 7 chr9 44691776 44691805 -79384367 - MIR SINE MIR -3 259 230 4 925 1764 10 0 0 chr9 44691805 44691998 -79384174 - B2_Mm1a SINE B2 0 193 1 4 925 294 285 170 8 chr9 44691998 44692170 -79384002 - MIR SINE MIR -33 229 29 4 925 248 250 0 67 chr9 44692194 44692254 -79383918 + ID4 SINE ID 18 73 -10 4 925 306 0 0 0 chr9 44692258 44692292 -79383880 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 925 219 328 83 30 chr9 44692414 44692546 -79383626 - B1_Mm SINE Alu -5 142 4 4 925 413 287 32 121 chr9 44692546 44692627 -79383545 - ID SINE ID -160 64 1 4 925 270 0 0 0 chr9 44692632 44692662 -79383510 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 925 461 328 20 50 chr9 44692662 44692858 -79383314 - B3A SINE B2 -7 191 2 4 925 332 94 0 19 chr9 44692875 44692929 -79383243 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 4 925 484 196 186 9 chr9 44692931 44693044 -79383128 - B1F2 SINE Alu 0 149 17 4 925 435 162 0 0 chr9 44693385 44693465 -79382707 + CT-rich Low_complexity Low_complexity 2 81 0 4 925 1178 170 14 33 chr9 44693470 44693683 -79382489 - B3 SINE B2 0 216 8 4 925 563 236 31 16 chr9 44693701 44693830 -79382342 - B1F SINE Alu -17 132 2 4 925 514 284 58 36 chr9 44693857 44694131 -79382041 - L1M5 LINE L1 -417 5707 5428 4 925 899 222 24 10 chr9 44694217 44694426 -79381746 + B3 SINE B2 1 212 -4 4 925 282 244 121 11 chr9 44694558 44694649 -79381523 + MIR SINE MIR 98 198 -64 4 925 324 0 0 0 chr9 44694694 44694730 -79381442 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 925 400 204 129 30 chr9 44694744 44694845 -79381327 - ID_B1 SINE B4 0 224 114 4 925 437 223 24 47 chr9 44695115 44695242 -79380930 + B1_Mm SINE Alu 3 126 -21 4 925 465 180 0 0 chr9 44695258 44695347 -79380825 + GA-rich Low_complexity Low_complexity 3 91 0 4 926 563 323 0 12 chr9 44695749 44695912 -79380260 - RSINE1 SINE B4 -2 163 3 4 926 1537 58 0 0 chr9 44695995 44696184 -79379988 + B2_Mm1a SINE B2 1 189 -4 4 926 658 245 41 0 chr9 44696540 44696687 -79379485 + RSINE1 SINE B4 2 154 -11 4 926 732 207 74 25 chr9 44696713 44696916 -79379256 + B3 SINE B2 4 216 0 4 926 1368 70 6 0 chr9 44697191 44697363 -79378809 - B2_Mm2 SINE B2 -19 176 4 4 926 871 251 63 0 chr9 44697371 44697578 -79378594 - ID_B1 SINE B4 -3 221 2 4 926 285 322 70 45 chr9 44697622 44697778 -79378394 - RSINE1 SINE B4 -3 162 3 4 926 29 0 0 0 chr9 44697785 44697814 -79378358 + AT_rich Low_complexity Low_complexity 1 29 0 4 926 781 220 108 0 chr9 44697817 44698003 -79378169 - B3 SINE B2 -7 209 4 4 926 209 270 0 31 chr9 44698131 44698196 -79377976 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 4 926 466 174 0 0 chr9 44698205 44698291 -79377881 - PB1D9 SINE Alu -5 115 30 4 926 557 312 28 14 chr9 44698370 44698588 -79377584 + L2a LINE L2 2927 3147 -279 4 926 822 190 106 21 chr9 44698746 44698934 -79377238 - B3 SINE B2 -12 204 1 4 926 345 269 0 41 chr9 44698956 44699053 -79377119 - ID_B1 SINE B4 -18 206 114 4 926 319 278 78 0 chr9 44699192 44699307 -79376865 - ID_B1 SINE B4 -154 138 15 4 926 22 56 0 0 chr9 44699345 44699381 -79376791 + AT_rich Low_complexity Low_complexity 1 36 0 4 926 613 165 60 9 chr9 44699388 44699504 -79376668 - RSINE1 SINE B4 -36 129 8 4 926 758 124 9 5 chr9 44699671 44699803 -79376369 + B1_Mus2 SINE Alu 9 143 -5 4 926 26 0 0 0 chr9 44699804 44699830 -79376342 + AT_rich Low_complexity Low_complexity 1 26 0 4 926 1210 61 0 0 chr9 44699839 44699987 -79376185 + B1_Mus1 SINE Alu 1 148 0 4 926 205 100 20 20 chr9 44699990 44700041 -79376131 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 4 926 446 234 18 45 chr9 44700078 44700190 -79375982 - PB1D10 SINE Alu 0 117 9 4 926 275 280 48 29 chr9 44700104 44700207 -79375965 + YREP_Mm Unknown Unknown 222 326 -1486 4 926 225 262 23 81 chr9 44700376 44700463 -79375709 - ID4 SINE ID 0 83 2 4 926 456 231 82 37 chr9 44700498 44700633 -79375539 + B1F1 SINE Alu 9 149 0 4 926 232 317 73 0 chr9 44700909 44700991 -79375181 + L2a LINE L2 3246 3333 -54 4 926 1352 63 0 49 chr9 44701219 44701388 -79374784 + B2_Mm2 SINE B2 3 164 -31 4 926 1130 88 0 0 chr9 44701388 44701535 -79374637 + B1_Mus2 SINE Alu 1 147 0 4 926 1352 63 0 49 chr9 44701535 44701549 -79374623 + B2_Mm2 SINE B2 165 177 -18 4 926 259 98 19 38 chr9 44701549 44701602 -79374570 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 4 926 225 278 42 0 chr9 44701666 44701738 -79374434 - L2 LINE L2 -574 2845 2771 4 926 520 259 36 22 chr9 44701744 44701823 -79374349 + ID SINE ID 1 81 -143 4 926 327 298 0 0 chr9 44701823 44701907 -79374265 + B1F2 SINE Alu 1 84 -65 4 926 2996 149 67 53 chr9 44701909 44702067 -79374105 - RMER15 LTR ERVL 0 575 390 4 926 3228 125 29 6 chr9 44702067 44702582 -79373590 - RLTR11A2 LTR ERVK 0 527 1 4 926 2996 149 67 53 chr9 44702582 44702990 -79373182 - RMER15 LTR ERVL -186 389 1 4 926 184 0 97 0 chr9 44703061 44703092 -79373080 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 926 442 288 159 6 chr9 44703103 44703260 -79372912 + B4A SINE B4 24 204 -88 4 926 300 300 0 0 chr9 44703450 44703520 -79372652 + tRNA-Ala-GCA tRNA tRNA 3 72 -3 4 926 26 30 0 0 chr9 44703593 44703626 -79372546 + AT_rich Low_complexity Low_complexity 1 33 0 4 926 414 301 25 32 chr9 44703629 44703787 -79372385 - RSINE1 SINE B4 -8 157 1 4 926 219 257 57 0 chr9 44703801 44703871 -79372301 - L2 LINE L2 -783 2636 2563 4 926 638 162 453 0 chr9 44703893 44704041 -79372131 + B3 SINE B2 2 216 0 4 926 213 39 0 0 chr9 44704078 44704104 -79372068 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 926 501 17 0 0 chr9 44704104 44704161 -79372011 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 926 1231 35 0 0 chr9 44704215 44704356 -79371816 - B1_Mus2 SINE Alu -6 141 1 5 926 448 254 102 8 chr9 44704508 44704635 -79371537 + B1F1 SINE Alu 3 141 -8 5 926 432 264 86 2 chr9 44704842 44704973 -79371199 - B1F1 SINE Alu -2 147 1 5 926 335 195 217 12 chr9 44705022 44705105 -79371067 - RSINE1 SINE B4 -10 155 56 5 926 272 174 178 55 chr9 44705205 44705278 -79370894 - L2a LINE L2 -2 3424 3343 5 926 211 299 49 61 chr9 44705855 44705937 -79370235 + L2b LINE L2 3215 3309 -78 5 926 285 279 0 14 chr9 44706131 44706200 -79369972 + ID2 SINE ID 5 72 -11 5 926 631 225 35 28 chr9 44706260 44706402 -79369770 - B1F SINE Alu 0 149 7 5 926 1625 26 0 30 chr9 44706411 44706609 -79369563 - B2_Mm1a SINE B2 0 193 2 5 926 370 289 60 47 chr9 44706640 44706789 -79369383 + RSINE1 SINE B4 2 152 -13 5 926 741 299 73 51 chr9 44706833 44707108 -79369064 + B4A SINE B4 1 281 -11 5 926 386 79 16 0 chr9 44707109 44707172 -79369000 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 926 370 235 121 10 chr9 44707653 44707752 -79368420 - B3A SINE B2 -6 192 83 5 926 806 176 28 21 chr9 44708401 44708546 -79367626 + B1_Mur3 SINE Alu 1 146 -3 5 926 956 226 29 10 chr9 44708571 44708777 -79367395 + B3 SINE B2 3 212 -4 5 926 311 253 0 0 chr9 44708789 44708868 -79367304 + L1MA5 LINE L1 6220 6298 -2 5 926 1110 83 0 20 chr9 44708965 44709112 -79367060 + B1_Mus1 SINE Alu 5 148 0 5 926 660 189 0 0 chr9 44709178 44709289 -79366883 - B4 SINE B4 -74 218 108 5 926 1236 61 0 0 chr9 44709321 44709468 -79366704 - B1_Mus1 SINE Alu 0 148 2 5 926 637 203 65 0 chr9 44709507 44709645 -79366527 - B1_Mur1 SINE Alu -1 148 2 5 926 341 214 143 0 chr9 44709721 44709805 -79366367 + B1F SINE Alu 3 98 -51 5 926 2273 158 56 8 chr9 44709838 44710228 -79365944 + MTC LTR MaLR 13 421 0 5 926 598 283 36 0 chr9 44710251 44710389 -79365783 + B1F2 SINE Alu 7 149 0 5 926 367 302 89 141 chr9 44710450 44710720 -79365452 + B4A SINE B4 37 292 0 5 926 415 333 25 0 chr9 44710810 44711096 -79365076 + (CA)n Simple_repeat Simple_repeat 1 293 0 5 926 935 129 13 26 chr9 44711145 44711296 -79364876 + B1_Mur4 SINE Alu 2 150 0 5 926 225 154 0 0 chr9 44711298 44711337 -79364835 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 926 264 333 119 48 chr9 44711342 44711356 -79364816 + B4 SINE B4 70 92 -200 5 926 682 180 61 8 chr9 44711356 44711501 -79364671 + B1_Mur1 SINE Alu 1 148 0 5 926 378 143 500 0 chr9 44712178 44712276 -79363896 + B1F2 SINE Alu 2 148 -1 5 926 504 0 0 0 chr9 44712278 44712334 -79363838 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 926 429 237 128 15 chr9 44712561 44712694 -79363478 - B1F2 SINE Alu -1 148 1 5 926 234 0 0 0 chr9 44712886 44712912 -79363260 + (T)n Simple_repeat Simple_repeat 1 26 0 5 926 228 315 29 95 chr9 44713421 44713558 -79362614 - L2c LINE L2 -18 3369 3242 5 926 616 298 284 25 chr9 44713960 44714368 -79361804 - L2 LINE L2 -1828 1591 1079 5 926 381 275 159 0 chr9 44714560 44714698 -79361474 + RSINE1 SINE B4 2 161 -4 5 926 269 263 79 99 chr9 44714777 44714791 -79361381 - L2 LINE L2 -2648 771 758 5 926 845 149 152 44 chr9 44714791 44714995 -79361177 + URR1A DNA MER1_type 1 226 0 5 926 269 263 79 99 chr9 44714995 44715132 -79361040 - L2 LINE L2 -2662 757 623 5 926 533 199 16 10 chr9 44715770 44715922 -79360250 + B1_Mur4 SINE Alu 1 147 0 5 926 249 224 61 73 chr9 44716133 44716215 -79359957 - ID4 SINE ID -69 83 3 5 926 222 309 50 20 chr9 44716215 44716301 -79359871 - B1_Mm SINE Alu -58 89 1 5 926 238 218 36 0 chr9 44716247 44716302 -79359870 - B4 SINE B4 -151 141 85 5 926 888 235 14 9 chr9 44716332 44716547 -79359625 + B3 SINE B2 1 216 0 5 926 28 0 0 0 chr9 44716797 44716825 -79359347 + AT_rich Low_complexity Low_complexity 1 28 0 5 926 1042 68 161 0 chr9 44716829 44716991 -79359181 + B2_Mm1a SINE B2 2 189 -4 5 926 480 243 131 0 chr9 44717031 44717138 -79359034 - B1_Mus1 SINE Alu -26 122 2 5 926 258 289 79 0 chr9 44717195 44717271 -79358901 - ID2 SINE ID 0 83 2 5 926 374 256 85 0 chr9 44717287 44717416 -79358756 - B1F1 SINE Alu -9 140 1 5 926 818 217 91 5 chr9 44717426 44717625 -79358547 - ID_B1 SINE B4 -8 216 1 5 926 371 261 75 11 chr9 44717677 44717770 -79358402 - RSINE1 SINE B4 -31 134 36 5 926 323 282 13 0 chr9 44717793 44717871 -79358301 - 4.5SRNA scRNA scRNA -7 87 9 5 926 763 138 78 28 chr9 44717917 44718059 -79358113 - B1_Mur2 SINE Alu 0 149 1 5 926 1185 48 7 0 chr9 44718273 44718419 -79357753 - B1_Mus2 SINE Alu 0 147 1 5 926 1155 224 133 27 chr9 44718443 44718930 -79357242 + RMER15 LTR ERVL 12 575 0 5 926 912 209 40 20 chr9 44718931 44719131 -79357041 - B3 SINE B2 -7 209 6 5 926 242 250 18 0 chr9 44719236 44719292 -79356880 - PB1D10 SINE Alu -18 99 43 5 926 668 233 0 0 chr9 44720352 44720472 -79355700 - B1_Mus2 SINE Alu -15 132 13 5 926 323 333 51 34 chr9 44720373 44720491 -79355681 - B4 SINE B4 -94 198 79 5 926 261 240 0 0 chr9 44720641 44720691 -79355481 - ID_B1 SINE B4 -1 223 174 5 926 354 255 91 36 chr9 44720705 44720815 -79355357 - PB1 SINE Alu 0 127 12 5 926 180 0 0 0 chr9 44720976 44720996 -79355176 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 5 926 856 114 15 29 chr9 44721016 44721152 -79355020 - B1_Mus1 SINE Alu -12 136 3 5 926 195 42 0 0 chr9 44722898 44722922 -79353250 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 926 200 182 0 0 chr9 44723748 44723781 -79352391 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 5 926 493 192 39 0 chr9 44723879 44723983 -79352189 - B1_Mur4 SINE Alu -1 149 42 5 926 834 110 54 20 chr9 44724268 44724417 -79351755 + B2_Mm2 SINE B2 34 187 -8 5 926 485 281 91 30 chr9 44724439 44724604 -79351568 - B3A SINE B2 -22 176 2 5 926 1661 27 0 0 chr9 44724653 44724839 -79351333 + B2_Mm1a SINE B2 2 187 -6 5 926 352 175 0 0 chr9 44724865 44724928 -79351244 + MTD LTR MaLR 1 63 -356 5 926 842 156 7 15 chr9 44724939 44725076 -79351096 + B1_Mur4 SINE Alu 5 140 -10 5 926 266 0 0 29 chr9 44725076 44725111 -79351061 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 926 453 246 118 0 chr9 44725139 44725249 -79350923 + MTD LTR MaLR 50 172 -247 5 926 1115 109 109 0 chr9 44725287 44725461 -79350711 - B2_Mm2 SINE B2 -1 194 2 5 926 640 279 105 41 chr9 44725505 44725924 -79350248 + L1MC4a LINE L1 6689 7134 -748 5 926 216 97 0 0 chr9 44726263 44726294 -79349878 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 5 926 975 52 0 0 chr9 44726294 44726428 -79349744 - B1_Mus2 SINE Alu 0 147 14 5 926 990 90 250 0 chr9 44726447 44726603 -79349569 - B2_Mm2 SINE B2 0 195 1 5 926 437 297 97 8 chr9 44726603 44726861 -79349311 + L1MC4a LINE L1 7547 7827 -168 5 926 1231 54 157 0 chr9 44727023 44727189 -79348983 + B2_Mm2 SINE B2 2 193 -2 5 926 1404 71 27 0 chr9 44727752 44727936 -79348236 + B2_Mm2 SINE B2 2 190 -5 5 926 1246 91 48 0 chr9 44729727 44729913 -79346259 + B2_Mm2 SINE B2 1 195 0 5 926 833 146 57 6 chr9 44730687 44730846 -79345326 - URR1B DNA MER1_type 0 225 59 5 926 344 252 26 0 chr9 44733719 44733834 -79342338 + A-rich Low_complexity Low_complexity 3 120 0 5 926 999 101 6 45 chr9 44734315 44734471 -79341701 - B1_Mur4 SINE Alu 0 150 1 5 926 195 100 0 0 chr9 44734506 44734536 -79341636 + (TGG)n Simple_repeat Simple_repeat 1 30 0 5 926 831 265 17 0 chr9 44734544 44734725 -79341447 + B3 SINE B2 26 209 -7 5 926 334 370 0 0 chr9 44734820 44734912 -79341260 - PB1 SINE Alu -7 120 29 5 926 235 301 96 0 chr9 44734983 44735056 -79341116 + ID4 SINE ID 4 83 0 5 926 581 252 50 37 chr9 44735064 44735225 -79340947 + RSINE1 SINE B4 2 164 -1 5 926 505 176 78 0 chr9 44735322 44735424 -79340748 + RMER6C LTR ERVK 1 110 -580 5 926 281 183 32 48 chr9 44735409 44735472 -79340700 + MT2B LTR ERVL 181 242 -359 5 926 204 40 0 0 chr9 44735474 44735499 -79340673 + (CAGTG)n Simple_repeat Simple_repeat 1 25 0 5 926 1483 125 3 42 chr9 44735526 44735810 -79340362 + RMER6C LTR ERVK 418 690 0 5 926 744 279 42 5 chr9 44735810 44736001 -79340171 + ID_B1 SINE B4 25 222 -2 5 926 1301 78 67 0 chr9 44736094 44736274 -79339898 + B2_Mm1a SINE B2 2 193 0 5 926 486 250 47 0 chr9 44736419 44736547 -79339625 + ID_B1 SINE B4 86 219 -5 5 926 1215 54 0 0 chr9 44736552 44736699 -79339473 + B1_Mus1 SINE Alu 2 148 0 5 926 251 0 59 0 chr9 44736700 44736734 -79339438 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 926 315 307 43 9 chr9 44736782 44736897 -79339275 + PB1 SINE Alu 1 119 -8 5 926 671 273 12 18 chr9 44736911 44737079 -79339093 + B3 SINE B2 9 175 -41 5 926 669 217 36 0 chr9 44737429 44737567 -79338605 - B1F2 SINE Alu -6 143 1 5 926 204 160 0 74 chr9 44738016 44738031 -79338141 + T-rich Low_complexity Low_complexity 36 50 0 5 926 1251 110 60 11 chr9 44738031 44738215 -79337957 - B2_Mm2 SINE B2 -2 193 1 6 926 204 160 0 74 chr9 44738215 44738238 -79337934 + T-rich Low_complexity Low_complexity 13 35 0 6 926 1216 48 7 0 chr9 44738238 44738384 -79337788 - B1_Mus1 SINE Alu 0 148 2 6 926 204 160 0 74 chr9 44738384 44738398 -79337774 + T-rich Low_complexity Low_complexity 2 12 0 6 926 740 107 90 0 chr9 44738689 44738811 -79337361 + B1_Mus1 SINE Alu 1 133 -15 6 926 463 200 19 19 chr9 44738884 44739006 -79337166 - B1_Mus1 SINE Alu 0 127 2 6 926 243 181 41 144 chr9 44738921 44739018 -79337154 - MT2B2 LTR ERVL -343 241 155 6 926 384 299 9 0 chr9 44739233 44739340 -79336832 - PB1D10 SINE Alu -8 109 2 6 926 4158 69 16 13 chr9 44739444 44740000 -79336172 + L1Md_F2 LINE L1 6025 6582 0 6 926 1213 48 0 0 chr9 44740222 44740368 -79335804 - B1_Mus1 SINE Alu -1 147 2 6 926 1103 278 7 17 chr9 44740737 44741026 -79335146 - B4A SINE B4 -3 289 4 6 926 213 238 0 0 chr9 44741053 44741095 -79335077 - B1_Mus1 SINE Alu -67 81 40 6 926 656 24 0 0 chr9 44741680 44741763 -79334409 + L1Md_T LINE L1 6500 6582 0 6 926 1103 65 7 0 chr9 44741824 44741962 -79334210 + B1_Mus1 SINE Alu 1 139 -9 6 926 330 26 0 0 chr9 44741962 44742001 -79334171 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 926 757 232 0 0 chr9 44742053 44742191 -79333981 - RSINE1 SINE B4 -6 159 22 6 926 295 299 111 22 chr9 44742229 44742455 -79333717 - HAL1 LINE L1 -1311 1196 951 6 926 229 289 122 10 chr9 44742593 44742691 -79333481 - MT2B LTR ERVL -344 257 149 6 926 1189 54 14 0 chr9 44742811 44742959 -79333213 - B1_Mur4 SINE Alu 0 150 1 6 926 447 229 55 5 chr9 44743135 44743314 -79332858 - ID_B1 SINE B4 -3 221 1 6 926 763 239 81 5 chr9 44743676 44743874 -79332298 + B3 SINE B2 1 213 -3 6 926 547 253 200 0 chr9 44743877 44744047 -79332125 + B3 SINE B2 2 205 -11 6 926 720 219 13 7 chr9 44744144 44744296 -79331876 + RSINE1 SINE B4 3 155 -10 6 926 574 297 66 12 chr9 44745096 44745263 -79330909 - B3A SINE B2 -22 176 1 6 926 417 286 0 10 chr9 44745443 44745542 -79330630 + PB1D7 SINE Alu 2 99 -21 6 926 235 176 39 0 chr9 44745586 44745637 -79330535 + (CCA)n Simple_repeat Simple_repeat 1 53 0 6 926 317 259 89 64 chr9 44746251 44746408 -79329764 + Lx8 LINE L1 7300 7460 -13 6 926 512 190 219 16 chr9 44746418 44746541 -79329631 - B1_Mur2 SINE Alu -1 148 1 6 926 241 288 59 59 chr9 44746541 44746626 -79329546 - B1F2 SINE Alu -64 85 1 6 926 21 0 0 0 chr9 44746786 44746807 -79329365 + AT_rich Low_complexity Low_complexity 1 21 0 6 926 1643 37 0 0 chr9 44746807 44746997 -79329175 - B2_Mm1a SINE B2 -2 191 2 6 926 273 299 38 156 chr9 44747328 44747410 -79328762 - B4 SINE B4 0 292 129 6 926 645 125 0 0 chr9 44747410 44747514 -79328658 - B1_Mur4 SINE Alu -2 148 45 6 926 566 280 36 21 chr9 44747523 44747716 -79328456 - B4A SINE B4 -56 236 41 6 926 229 374 60 6 chr9 44747771 44747954 -79328218 + MIRb SINE MIR 68 260 -8 6 926 688 237 14 0 chr9 44748368 44748507 -79327665 - B1_Mur2 SINE Alu -8 141 1 6 926 840 248 80 10 chr9 44749882 44750181 -79325991 + MLT1F1 LTR MaLR 213 556 -13 6 926 521 133 189 91 chr9 44751816 44751948 -79324224 + B1_Mus2 SINE Alu 2 146 -1 6 926 953 244 81 11 chr9 44751981 44752242 -79323930 + B4A SINE B4 1 279 -13 6 926 634 266 14 0 chr9 44753302 44753445 -79322727 - B1_Mur4 SINE Alu -5 145 1 6 926 224 333 78 0 chr9 44755080 44755182 -79320990 - RSINE1 SINE B4 -54 111 2 6 926 260 265 0 29 chr9 44755553 44755623 -79320549 - B4 SINE B4 -56 236 169 6 926 264 208 327 29 chr9 44755563 44755667 -79320505 - B1_Mur4 SINE Alu 0 150 13 6 926 634 134 26 18 chr9 44755710 44755824 -79320348 - PB1D9 SINE Alu -2 118 4 6 926 375 248 114 16 chr9 44755833 44755956 -79320216 - ID_B1 SINE B4 -4 220 86 6 926 393 22 0 0 chr9 44756483 44756529 -79319643 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 926 610 210 47 31 chr9 44756549 44756677 -79319495 - RSINE1 SINE B4 -35 130 1 6 926 262 252 175 39 chr9 44756677 44756773 -79319399 - B1F1 SINE Alu -39 110 1 6 926 357 24 0 0 chr9 44757131 44757173 -79318999 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 6 926 863 9 9 0 chr9 44757313 44757423 -79318749 - B1_Mus1 SINE Alu 0 148 38 6 926 1080 180 43 14 chr9 44757428 44757637 -79318535 - B3 SINE B2 0 216 2 6 926 932 143 0 0 chr9 44758082 44758229 -79317943 - B1_Mus1 SINE Alu 0 148 2 6 926 432 236 7 115 chr9 44758388 44758527 -79317645 - B1F SINE Alu -19 130 7 6 926 183 80 0 0 chr9 44758604 44758629 -79317543 + (T)n Simple_repeat Simple_repeat 1 25 0 6 926 348 299 76 66 chr9 44759483 44759694 -79316478 - B4A SINE B4 -22 270 58 6 926 309 276 28 19 chr9 44760246 44760353 -79315819 - PB1 SINE Alu -19 108 1 6 926 1210 119 43 0 chr9 44760749 44760934 -79315238 - B2_Mm2 SINE B2 0 195 3 6 926 265 310 185 44 chr9 44761716 44761851 -79314321 - RSINE1 SINE B4 -6 159 6 6 926 743 168 57 99 chr9 44762099 44762291 -79313881 - B2_Mm2 SINE B2 -11 184 1 6 926 1136 82 0 0 chr9 44762414 44762560 -79313612 + B1_Mus2 SINE Alu 1 146 -1 6 926 262 245 0 0 chr9 44762693 44762746 -79313426 - ID SINE ID -170 54 2 6 926 519 254 7 7 chr9 44762748 44762887 -79313285 - ID_B1 SINE B4 0 224 86 6 926 544 256 8 0 chr9 44763127 44763248 -79312924 + RSINE1 SINE B4 3 124 -41 6 926 468 0 0 0 chr9 44763248 44763300 -79312872 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 926 1143 81 0 0 chr9 44763445 44763593 -79312579 + B1_Mus1 SINE Alu 1 148 0 6 926 21 36 0 0 chr9 44765845 44765873 -79310299 + AT_rich Low_complexity Low_complexity 1 28 0 6 926 671 221 58 7 chr9 44765877 44766032 -79310140 - RSINE1 SINE B4 -1 164 2 6 926 1176 48 7 0 chr9 44766220 44766366 -79309806 + B1_Mm SINE Alu 1 147 0 6 926 207 69 0 0 chr9 44766368 44766397 -79309775 + (A)n Simple_repeat Simple_repeat 1 29 0 6 926 836 206 26 21 chr9 44766968 44767157 -79309015 + B2_Mm2 SINE B2 3 192 -3 6 926 1400 29 109 6 chr9 44767161 44767317 -79308855 + B2_Mm1a SINE B2 1 175 -18 6 926 252 86 0 0 chr9 44767317 44767352 -79308820 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 926 1400 29 109 6 chr9 44767352 44767369 -79308803 + B2_Mm1a SINE B2 176 192 -1 6 926 580 275 54 12 chr9 44768695 44768868 -79307304 - ID_B1 SINE B4 -1 223 51 6 926 238 375 79 15 chr9 44769350 44769553 -79306619 + MLT1K LTR MaLR 198 413 -182 6 926 590 302 87 35 chr9 44769849 44770103 -79306069 - B4A SINE B4 -17 275 9 6 926 521 232 10 11 chr9 44770119 44770244 -79305928 - B1F1 SINE Alu 0 120 1 6 926 275 272 9 97 chr9 44770143 44770257 -79305915 - MT2B2 LTR ERVL -329 255 152 6 926 264 241 0 179 chr9 44770819 44770925 -79305247 + MTD LTR MaLR 6 92 -287 6 926 1067 72 159 18 chr9 44770936 44771106 -79305066 + B2_Mm2 SINE B2 1 194 -1 6 926 642 229 96 26 chr9 44771106 44771293 -79304879 + MTD LTR MaLR 211 405 -14 6 926 226 327 9 84 chr9 44771600 44771707 -79304465 + MT2B LTR ERVL 165 263 -338 6 926 522 229 6 1 chr9 44771611 44771723 -79304449 + PB1D10 SINE Alu 12 128 -21 6 926 459 267 41 7 chr9 44771737 44771884 -79304288 + B3A SINE B2 41 192 -6 6 926 281 233 0 11 chr9 44771895 44771986 -79304186 + GA-rich Low_complexity Low_complexity 1 90 0 6 926 844 241 34 3 chr9 44771988 44772188 -79303984 + B3A SINE B2 8 216 0 6 926 238 231 62 0 chr9 44772601 44772666 -79303506 + tRNA-Ala-GCY_ tRNA tRNA 3 71 -4 6 926 21 57 0 0 chr9 44774160 44774195 -79301977 + AT_rich Low_complexity Low_complexity 1 35 0 6 926 483 167 0 0 chr9 44774234 44774318 -79301854 - B3 SINE B2 -86 130 47 6 926 407 314 17 8 chr9 44774384 44774503 -79301669 + ID_B1 SINE B4 86 205 -19 6 926 310 221 144 0 chr9 44774823 44774927 -79301245 + L1MB8 LINE L1 5079 5197 -949 6 926 752 233 39 10 chr9 44774976 44775184 -79300988 + B3 SINE B2 2 215 -1 6 926 644 282 71 84 chr9 44775269 44775417 -79300755 + L1MB8 LINE L1 5536 5678 -500 6 926 861 163 14 0 chr9 44775417 44775564 -79300608 + B1_Mur4 SINE Alu 2 150 0 6 926 644 282 71 84 chr9 44775564 44775725 -79300447 + L1MB8 LINE L1 5679 5841 -337 6 926 1326 110 44 35 chr9 44775756 44776059 -79300113 + RLTR10C LTR ERVK 1 305 -60 6 926 420 99 0 0 chr9 44776253 44776324 -79299848 + (T)n Simple_repeat Simple_repeat 1 71 0 6 926 299 204 102 0 chr9 44776332 44776420 -79299752 + B3 SINE B2 115 211 -5 6 926 1070 61 0 75 chr9 44776440 44776599 -79299573 + B1_Mus2 SINE Alu 1 147 0 6 926 229 317 68 19 chr9 44776671 44776774 -79299398 + RSINE1 SINE B4 7 114 -51 6 926 715 105 0 0 chr9 44776770 44776875 -79299297 + RMER6A LTR ERVK 652 756 0 6 926 475 135 0 0 chr9 44776875 44776949 -79299223 - B3 SINE B2 -141 75 2 6 926 797 152 21 0 chr9 44776978 44777123 -79299049 + RLTR30 LTR ERV1 226 373 -6 6 926 220 224 0 0 chr9 44777358 44777407 -79298765 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6 926 349 344 52 19 chr9 44777420 44777574 -79298598 - RSINE1 SINE B4 0 165 7 7 926 24 32 0 0 chr9 44777842 44777873 -79298299 + AT_rich Low_complexity Low_complexity 1 31 0 7 926 395 216 125 0 chr9 44778210 44778298 -79297874 - B1_Mur2 SINE Alu -45 104 6 7 926 342 271 23 78 chr9 44778298 44778312 -79297860 - MT2B LTR ERVL -344 257 163 7 926 541 245 128 32 chr9 44778312 44778468 -79297704 + MER20 DNA MER1_type 4 174 -45 7 926 254 182 0 61 chr9 44778915 44778997 -79297175 + (TTATA)n Simple_repeat Simple_repeat 5 81 0 7 926 833 289 98 3 chr9 44779439 44779807 -79296365 + L1ME3A LINE L1 5760 6162 -11 7 926 397 308 0 97 chr9 44779985 44780005 -79296167 - ID_B1 SINE B4 0 224 95 7 926 590 274 0 0 chr9 44780005 44780129 -79296043 - B1F SINE Alu -12 137 14 7 926 821 196 0 7 chr9 44780166 44780315 -79295857 - B1_Mur1 SINE Alu -1 148 1 7 926 249 164 41 0 chr9 44780337 44780410 -79295762 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 926 282 106 0 0 chr9 44780410 44780457 -79295715 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 926 401 283 167 0 chr9 44780476 44780596 -79295576 + B1F1 SINE Alu 8 147 -2 7 926 364 309 58 47 chr9 44780627 44780817 -79295355 + L1MEg LINE L1 1804 1995 -4089 7 926 215 314 100 0 chr9 44780975 44781045 -79295127 - ID4_ SINE ID -3 80 4 7 926 761 296 5 9 chr9 44781060 44781282 -79294890 - ID_B1 SINE B4 -2 222 2 7 926 823 296 5 5 chr9 44781292 44781509 -79294663 - ID_B1 SINE B4 -7 217 1 7 926 929 99 13 53 chr9 44782545 44782695 -79293477 - B1_Mur4 SINE Alu -6 144 1 7 926 425 254 114 14 chr9 44782695 44782832 -79293340 - MER5A1 DNA MER1_type -7 159 9 7 926 540 267 0 88 chr9 44783021 44783047 -79293125 - B2_Mm2 SINE B2 -19 176 151 7 926 302 0 26 0 chr9 44783047 44783085 -79293087 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 926 846 244 0 14 chr9 44783085 44783251 -79292921 - B3A SINE B2 -38 160 1 7 926 1134 75 8 4 chr9 44783557 44783818 -79292354 + (TTCC)n Simple_repeat Simple_repeat 1 262 0 7 926 468 250 87 83 chr9 44783829 44784043 -79292129 - B3A SINE B2 -2 214 2 7 926 805 141 436 0 chr9 44784178 44784334 -79291838 - URR1A DNA MER1_type 0 226 3 7 926 790 280 40 18 chr9 44784417 44784639 -79291533 + RMER15 LTR ERVL 336 562 -13 7 926 746 316 79 4 chr9 44784649 44784903 -79291269 + RMER15-int LTR ERVL 3 275 -4724 7 926 259 322 6 126 chr9 44784903 44784958 -79291214 + MT2B LTR ERVL 118 152 -449 7 926 592 248 17 0 chr9 44784958 44785075 -79291097 + B1_Mur2 SINE Alu 2 120 -29 7 926 587 51 13 0 chr9 44785082 44785161 -79291011 + (GA)n Simple_repeat Simple_repeat 2 81 0 7 926 204 337 128 0 chr9 44785214 44785300 -79290872 - L2c LINE L2 -237 3150 3054 7 926 1130 64 0 7 chr9 44785317 44785458 -79290714 + B1_Mm SINE Alu 3 142 -5 7 926 723 153 137 0 chr9 44785737 44785868 -79290304 + B1_Mur4 SINE Alu 1 149 -1 7 926 987 241 36 5 chr9 44785880 44786076 -79290096 - B3 SINE B2 -7 209 8 7 926 198 71 0 0 chr9 44786970 44786998 -79289174 + (TTG)n Simple_repeat Simple_repeat 2 29 0 7 926 442 282 113 0 chr9 44786998 44787122 -79289050 - B1F SINE Alu -10 139 2 7 926 504 216 10 10 chr9 44787223 44787321 -79288851 + B1F SINE Alu 1 98 -51 7 926 784 243 7 0 chr9 44787356 44787508 -79288664 + RSINE1 SINE B4 13 165 0 7 926 345 100 0 0 chr9 44787840 44787890 -79288282 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 926 353 277 129 45 chr9 44787930 44788085 -79288087 - B4 SINE B4 -121 171 4 7 926 189 242 60 15 chr9 44788192 44788259 -79287913 - L3 LINE CR1 -2141 2348 2279 7 926 25 0 0 0 chr9 44791548 44791573 -79284599 + AT_rich Low_complexity Low_complexity 1 25 0 7 926 550 257 14 49 chr9 44791731 44791874 -79284298 - B1F SINE Alu 0 149 12 7 926 726 180 0 0 chr9 44791876 44792015 -79284157 + (TA)n Simple_repeat Simple_repeat 2 140 0 7 926 1163 286 68 27 chr9 44792456 44792826 -79283346 - MTD LTR MaLR 0 419 35 7 926 185 0 40 0 chr9 44793867 44793892 -79282280 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 926 264 30 0 0 chr9 44794861 44794894 -79281278 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 926 549 119 0 0 chr9 44794889 44794990 -79281182 + (GA)n Simple_repeat Simple_repeat 1 101 0 7 926 498 191 21 11 chr9 44794998 44795093 -79281079 - RSINE1 SINE B4 -67 98 3 7 926 2287 221 112 54 chr9 44795101 44795619 -79280553 + RCHARR1 DNA MER1_type 111 660 -314 7 926 671 254 132 0 chr9 44795619 44795808 -79280364 - ID_B1 SINE B4 -9 215 2 7 926 2287 221 112 54 chr9 44795808 44795944 -79280228 + RCHARR1 DNA MER1_type 661 783 -191 7 926 998 203 5 34 chr9 44795944 44796148 -79280024 - B3A SINE B2 0 198 1 7 926 2287 221 112 54 chr9 44796148 44796174 -79279998 + RCHARR1 DNA MER1_type 784 809 -165 7 926 378 0 0 0 chr9 44796174 44796216 -79279956 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 926 2287 221 112 54 chr9 44796216 44796259 -79279913 + RCHARR1 DNA MER1_type 810 877 -97 7 926 632 274 41 0 chr9 44796253 44796399 -79279773 - RSINE1 SINE B4 -12 153 2 7 926 399 194 118 69 chr9 44796399 44796541 -79279631 + RCHARR1 DNA MER1_type 826 974 0 7 926 648 264 0 13 chr9 44796663 44796813 -79279359 - B1F2 SINE Alu -1 148 1 7 926 459 322 16 18 chr9 44796833 44796996 -79279176 + MLT1A0 LTR MaLR 48 202 -206 7 926 418 207 65 57 chr9 44797180 44797303 -79278869 + RMER5 LTR ERV1 1 124 -410 7 926 370 271 133 21 chr9 44797316 44797459 -79278713 + RMER5 LTR ERV1 231 389 -145 7 926 378 235 11 23 chr9 44797480 44797567 -79278605 + B4A SINE B4 15 100 -192 7 926 46 45 0 0 chr9 44797775 44797842 -79278330 + AT_rich Low_complexity Low_complexity 1 67 0 7 926 265 82 0 169 chr9 44797842 44797901 -79278271 - B2_Mm1a SINE B2 -18 175 127 7 926 476 146 12 47 chr9 44797918 44798004 -79278168 - B2_Mm1t SINE B2 -44 149 67 7 926 894 141 7 0 chr9 44797992 44798127 -79278045 - B1_Mm SINE Alu -3 144 9 7 926 650 237 42 21 chr9 44798141 44798331 -79277841 - B3A SINE B2 0 198 5 7 926 300 257 53 35 chr9 44799315 44799428 -79276744 - L1MD LINE L1 -2949 3197 3083 7 926 1899 128 13 129 chr9 44799554 44799607 -79276565 - ORR1B1 LTR MaLR 0 394 354 7 926 1716 16 5 0 chr9 44799607 44799799 -79276373 - B2_Mm1a SINE B2 0 193 1 7 926 1899 128 13 129 chr9 44799799 44800139 -79276033 - ORR1B1 LTR MaLR -41 353 47 7 926 899 194 91 15 chr9 44800156 44800355 -79275817 + RLTR42-int LTR ERVK 1126 1339 -4183 7 926 483 250 80 43 chr9 44800495 44800658 -79275514 + RLTR42-int LTR ERVK 1627 1795 -3727 7 926 464 206 10 154 chr9 44800648 44800802 -79275370 + RLTR19-int LTR ERVK 996 1128 -5009 7 926 3628 33 28 5 chr9 44800802 44801228 -79274944 - RLTR10C LTR ERVK 0 436 1 7 926 464 206 10 154 chr9 44801228 44801274 -79274898 + RLTR19-int LTR ERVK 1129 1167 -4970 7 926 644 181 0 0 chr9 44801274 44801379 -79274793 + MTC-int LTR MaLR 473 577 -681 7 926 1712 247 142 90 chr9 44801634 44803311 -79272861 + RLTR19-int LTR ERVK 1846 3840 -2297 7 926 1283 226 38 78 chr9 44803316 44803686 -79272486 + RLTR19-int LTR ERVK 4023 4377 -1760 7 926 240 35 0 0 chr9 44803941 44803970 -79272202 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 7 926 3571 40 28 9 chr9 44804263 44804691 -79271481 + RLTR10C LTR ERVK 1 436 0 7 926 639 268 24 0 chr9 44805146 44805269 -79270903 - RSINE1 SINE B4 -38 127 2 7 926 290 196 36 0 chr9 44805269 44805318 -79270854 + RMER5 LTR ERV1 479 529 -5 7 926 711 154 0 203 chr9 44805509 44805696 -79270476 + B1_Mur2 SINE Alu 1 149 0 7 926 313 366 134 0 chr9 44805709 44805895 -79270277 + MIRb SINE MIR 42 252 -16 7 926 228 67 0 0 chr9 44806455 44806485 -79269687 + (CACG)n Simple_repeat Simple_repeat 3 32 0 7 926 333 245 88 34 chr9 44806983 44807072 -79269100 + L1M4c LINE L1 894 988 -5396 7 926 611 142 0 8 chr9 44807072 44807193 -79268979 + Lx3A LINE L1 6862 6981 0 7 926 333 200 122 65 chr9 44807193 44807264 -79268908 + L1M4c LINE L1 989 1048 -5336 7 926 229 338 111 0 chr9 44809436 44809552 -79266620 + MIRc SINE MIR 59 184 -78 7 926 275 309 110 72 chr9 44809583 44809639 -79266533 + ID_B1 SINE B4 8 163 -61 7 926 327 274 30 68 chr9 44809639 44809772 -79266400 + MT2B LTR ERVL 137 264 -337 7 926 589 188 83 38 chr9 44809677 44809810 -79266362 + B1_Mur4 SINE Alu 11 149 -1 7 926 275 309 110 72 chr9 44809772 44809792 -79266380 + ID_B1 SINE B4 164 224 0 7 926 1108 241 5 0 chr9 44811249 44811469 -79264703 - ID_B1 SINE B4 0 224 4 7 926 221 189 0 0 chr9 44811693 44811730 -79264442 - B1F2 SINE Alu -112 37 1 7 926 239 286 0 0 chr9 44812412 44812461 -79263711 - AmnSINE1 SINE SINE -488 87 39 7 926 703 210 14 14 chr9 44812483 44812623 -79263549 - B1_Mur1 SINE Alu -5 144 5 7 926 457 197 0 0 chr9 44812726 44812802 -79263370 - B3A SINE B2 -117 81 6 7 926 250 325 102 42 chr9 44812830 44813045 -79263127 - MIR SINE MIR -1 261 34 7 926 859 115 69 0 chr9 44814127 44814257 -79261915 - B1_Mur4 SINE Alu 0 150 12 7 926 506 275 42 35 chr9 44814130 44814273 -79261899 - B4 SINE B4 -69 223 80 7 926 351 167 0 0 chr9 44814305 44814371 -79261801 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 926 228 86 0 0 chr9 44814370 44814405 -79261767 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 926 924 187 267 9 chr9 44814407 44814639 -79261533 - B4A SINE B4 0 292 1 7 926 478 274 40 20 chr9 44816004 44816153 -79260019 - RSINE1 SINE B4 0 165 14 7 926 255 103 0 0 chr9 44816194 44816233 -79259939 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 7 926 288 280 20 51 chr9 44816293 44816391 -79259781 + MER5A1 DNA MER1_type 8 102 -64 7 926 296 326 19 58 chr9 44816370 44816474 -79259698 + PB1D10 SINE Alu 10 109 -8 7 926 423 0 0 0 chr9 44816870 44816917 -79259255 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 926 447 263 82 38 chr9 44818426 44818584 -79257588 - RSINE1 SINE B4 0 165 1 7 926 550 354 119 16 chr9 44818585 44818895 -79257277 - Lx8 LINE L1 -136 7337 6996 7 926 460 209 7 50 chr9 44818931 44819072 -79257100 + Lx5 LINE L1 6916 7050 0 7 926 244 277 23 35 chr9 44819126 44819212 -79256960 - B4A SINE B4 -5 287 203 7 926 404 198 9 54 chr9 44819301 44819413 -79256759 - Lx8 LINE L1 -2 7471 7365 8 926 345 268 123 4 chr9 44819541 44819675 -79256497 + LTR16A LTR ERVL 306 447 -9 8 926 300 285 22 89 chr9 44819887 44820022 -79256150 + Lx8 LINE L1 6943 7068 -405 8 926 240 202 146 123 chr9 44820037 44820167 -79256005 - LTR16A LTR ERVL -261 190 58 8 926 903 228 20 10 chr9 44820279 44820483 -79255689 - B3 SINE B2 -8 208 3 8 926 1140 49 177 6 chr9 44820498 44820662 -79255510 - B2_Mm2 SINE B2 -2 193 2 8 926 630 271 16 86 chr9 44820763 44820949 -79255223 - Lx8 LINE L1 -136 7337 7165 8 926 1070 51 7 0 chr9 44820959 44821096 -79255076 + B2_Mm2 SINE B2 1 138 -57 8 926 316 315 78 8 chr9 44821100 44821228 -79254944 - ERVL-B4-int LTR ERVL -1903 3811 3675 8 926 2451 77 6 66 chr9 44821366 44821430 -79254742 - ORR1A2 LTR MaLR 0 327 286 8 926 1448 75 37 0 chr9 44821430 44821618 -79254554 - B2_Mm2 SINE B2 0 195 1 8 926 2451 77 6 66 chr9 44821618 44821901 -79254271 - ORR1A2 LTR MaLR -42 285 1 8 926 306 330 9 28 chr9 44822003 44822109 -79254063 - ORR1E LTR MaLR -224 135 32 8 926 204 216 20 0 chr9 44822309 44822360 -79253812 + C-rich Low_complexity Low_complexity 5 56 0 8 926 355 236 14 0 chr9 44822368 44822508 -79253664 + (CATCC)n Simple_repeat Simple_repeat 3 144 0 8 926 1457 196 125 12 chr9 44822585 44822921 -79253251 - ORR1D1 LTR MaLR 0 374 1 8 926 519 270 23 45 chr9 44822983 44823115 -79253057 - B1F2 SINE Alu -20 129 1 8 926 324 294 57 65 chr9 44823314 44823543 -79252629 - L1M5 LINE L1 -1472 4674 4448 8 926 1110 98 10 0 chr9 44823585 44823791 -79252381 + (TCTA)n Simple_repeat Simple_repeat 1 208 0 8 926 541 325 6 12 chr9 44823797 44823962 -79252210 - RSINE1 SINE B4 0 165 2 8 926 511 348 105 37 chr9 44824126 44824585 -79251587 + MLT2F LTR ERVL 155 644 -19 8 926 383 259 12 0 chr9 44824690 44824771 -79251401 - PB1D10 SINE Alu -34 83 2 8 926 4250 114 24 2 chr9 44824819 44825407 -79250765 - MT2B LTR ERVL 0 601 1 8 926 721 255 9 75 chr9 44825634 44825846 -79250326 - B3A SINE B2 0 198 1 8 926 180 0 0 0 chr9 44825924 44825944 -79250228 + (TAGA)n Simple_repeat Simple_repeat 4 23 0 8 926 574 226 280 5 chr9 44826064 44826264 -79249908 + Tigger5 DNA MER2_type 53 307 -2099 8 926 549 319 57 29 chr9 44826273 44826483 -79249689 + Tigger5 DNA MER2_type 2191 2406 0 8 115 323 257 110 7 chr9 44826483 44826628 -79249544 - L1M5 LINE L1 -3121 3025 2866 8 927 312 326 21 0 chr9 44826627 44826768 -79249404 + L1MC LINE L1 4771 4914 -1232 8 927 225 158 0 0 chr9 44826788 44826826 -79249346 + PB1D9 SINE Alu 1 38 -82 8 927 718 260 27 11 chr9 44826820 44827003 -79249169 + B3 SINE B2 30 215 -1 8 927 527 301 108 26 chr9 44827029 44827336 -79248836 + L1M4 LINE L1 4966 5297 -849 8 927 183 42 0 0 chr9 44827388 44827412 -79248760 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 927 923 56 16 0 chr9 44827640 44827765 -79248407 + (TTTC)n Simple_repeat Simple_repeat 4 130 0 8 927 1152 133 16 44 chr9 44827765 44828017 -79248155 - RMER17C LTR ERVK -137 273 29 8 927 348 240 151 8 chr9 44828031 44828157 -79248015 + L1ME1 LINE L1 6022 6165 -14 8 927 782 256 39 10 chr9 44828301 44828506 -79247666 + B3 SINE B2 2 212 -4 8 927 633 233 0 15 chr9 44828508 44828639 -79247533 + B1_Mur1 SINE Alu 2 130 -19 8 927 324 0 0 0 chr9 44828640 44828676 -79247496 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 927 513 32 0 0 chr9 44828677 44828740 -79247432 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 927 616 242 137 0 chr9 44828749 44828939 -79247233 + B3 SINE B2 1 216 0 8 927 400 282 147 16 chr9 44829569 44829814 -79246358 + L1ME4a LINE L1 5847 6123 -1 8 927 236 203 41 55 chr9 44830057 44830130 -79246042 + Lx9 LINE L1 7092 7163 -481 8 927 1458 54 38 0 chr9 44830619 44830805 -79245367 + B2_Mm2 SINE B2 2 194 -1 8 927 451 299 154 5 chr9 44831129 44831337 -79244835 - L2c LINE L2 -3 3384 3146 8 927 180 0 0 0 chr9 44831571 44831591 -79244581 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 927 301 296 17 61 chr9 44831595 44831710 -79244462 - PB1D10 SINE Alu -7 110 1 8 927 242 319 40 91 chr9 44831842 44832018 -79244154 + MARNA DNA Mariner 324 490 -96 8 927 306 0 0 0 chr9 44832071 44832105 -79244067 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 927 514 213 24 39 chr9 44832110 44832237 -79243935 - RSINE1 SINE B4 -31 134 10 8 927 496 245 20 0 chr9 44832675 44832777 -79243395 + RSINE1 SINE B4 48 151 -14 8 927 1280 34 0 0 chr9 44832902 44833049 -79243123 - B1_Mus2 SINE Alu 0 147 1 8 927 472 302 23 8 chr9 44833183 44833313 -79242859 + MER94 DNA AcHobo 1 132 -2 8 927 231 111 18 36 chr9 44833387 44833443 -79242729 + (CACAA)n Simple_repeat Simple_repeat 2 56 0 8 927 1124 198 10 0 chr9 44833931 44834138 -79242034 + B3 SINE B2 1 209 -7 8 927 556 225 46 15 chr9 44834138 44834269 -79241903 + B3A SINE B2 36 170 -28 8 927 363 136 0 0 chr9 44834272 44834331 -79241841 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 8 927 1218 267 62 26 chr9 44834445 44834861 -79241311 - BGLII_B LTR ERVK -10 431 1 8 927 726 180 25 0 chr9 44834964 44835086 -79241086 + RSINE1 SINE B4 3 127 -38 8 927 450 0 0 0 chr9 44835132 44835182 -79240990 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 927 415 198 12 12 chr9 44836690 44836772 -79239400 - ID2 SINE ID 0 83 2 8 927 199 367 66 54 chr9 44836789 44836956 -79239216 + MIRb SINE MIR 41 209 -59 8 927 300 36 52 35 chr9 44837187 44837245 -79238927 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 8 927 228 288 48 105 chr9 44837562 44837686 -79238486 + MIRb SINE MIR 2 118 -150 8 927 186 71 0 0 chr9 44838762 44838790 -79237382 + (GTCTG)n Simple_repeat Simple_repeat 1 28 0 8 927 1110 21 0 20 chr9 44839547 44839695 -79236477 + (TCC)n Simple_repeat Simple_repeat 1 145 0 8 927 580 157 120 32 chr9 44839707 44839832 -79236340 - B1_Mur3 SINE Alu 0 149 14 8 927 744 165 107 0 chr9 44839950 44840071 -79236101 + RSINE1 SINE B4 14 147 -18 8 927 252 298 67 52 chr9 44840207 44840390 -79235782 - L1MB1 LINE L1 -107 6064 5883 8 927 396 0 0 0 chr9 44840407 44840451 -79235721 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 927 611 287 73 27 chr9 44840451 44840707 -79235465 - B4A SINE B4 -18 274 7 8 927 643 264 123 10 chr9 44840741 44841047 -79235125 - L1MB1 LINE L1 -575 5605 5259 8 927 688 224 7 26 chr9 44841132 44841283 -79234889 - B1F2 SINE Alu -1 148 1 8 927 221 238 119 37 chr9 44841413 44841522 -79234650 + L2a LINE L2 3052 3169 -257 8 927 229 349 12 0 chr9 44841527 44841610 -79234562 + L2a LINE L2 3343 3426 0 8 927 649 238 13 39 chr9 44842341 44842494 -79233678 - B1_Mur1 SINE Alu 0 149 1 8 927 342 327 32 13 chr9 44843078 44843236 -79232936 - B4 SINE B4 -127 165 8 8 927 657 0 0 0 chr9 44843416 44843489 -79232683 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 8 927 490 248 49 8 chr9 44843511 44843633 -79232539 - B1F2 SINE Alu -22 127 1 8 927 809 280 53 21 chr9 44843655 44844010 -79232162 - L1ME2z LINE L1 -226 5938 5563 8 927 403 284 38 15 chr9 44844081 44844257 -79231915 - MIRb SINE MIR -44 218 33 8 927 396 0 0 0 chr9 44844286 44844330 -79231842 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 927 2847 69 55 10 chr9 44844782 44845165 -79231007 - MTB LTR MaLR 0 400 1 8 927 7221 94 16 69 chr9 44845165 44846325 -79229847 - MTB-int LTR MaLR 0 1098 1 8 927 443 20 0 0 chr9 44846325 44846376 -79229796 + MTB_Mm LTR MaLR 357 407 0 8 927 262 250 16 0 chr9 44846731 44846795 -79229377 - ID4_ SINE ID -16 67 3 8 927 868 243 11 0 chr9 44846873 44847050 -79229122 - B3A SINE B2 -18 180 2 8 927 360 0 0 0 chr9 44847113 44847153 -79229019 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 927 231 343 140 19 chr9 44847153 44847260 -79228912 - MER21B LTR ERV1 -376 487 368 8 927 476 296 0 25 chr9 44849265 44849302 -79226870 - RSINE1 SINE B4 -6 159 125 8 927 447 19 0 0 chr9 44849302 44849354 -79226818 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 927 476 296 0 25 chr9 44849354 44849434 -79226738 - RSINE1 SINE B4 -41 124 45 8 927 346 288 0 0 chr9 44849713 44849793 -79226379 + ID2 SINE ID 1 80 -3 8 927 241 93 45 23 chr9 44849814 44849858 -79226314 + B1F SINE Alu 99 143 -6 8 927 1006 93 0 62 chr9 44849913 44850073 -79226099 - B1_Mur4 SINE Alu 0 150 1 8 927 189 0 0 0 chr9 44851440 44851461 -79224711 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 8 927 279 113 0 0 chr9 44852466 44852519 -79223653 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 927 555 118 0 0 chr9 44852525 44852610 -79223562 + (CACG)n Simple_repeat Simple_repeat 1 85 0 8 927 259 250 59 0 chr9 44852856 44852924 -79223248 - MIRb SINE MIR -17 251 180 8 927 1177 184 0 14 chr9 44853029 44853238 -79222934 - B3 SINE B2 -7 209 4 8 927 299 321 71 36 chr9 44853239 44853407 -79222765 - MIRb SINE MIR -68 200 27 8 927 21 0 0 0 chr9 44853704 44853725 -79222447 + AT_rich Low_complexity Low_complexity 1 21 0 8 927 1205 55 0 0 chr9 44853747 44853893 -79222279 + B1_Mus2 SINE Alu 2 147 0 8 927 352 322 5 8 chr9 44854022 44854119 -79222053 - PB1D10 SINE Alu -27 122 28 8 927 206 167 24 0 chr9 44854377 44854419 -79221753 + (CAA)n Simple_repeat Simple_repeat 2 44 0 8 927 21 0 0 0 chr9 44854424 44854445 -79221727 + GC_rich Low_complexity Low_complexity 1 21 0 8 927 385 173 147 0 chr9 44854572 44854647 -79221525 - B3 SINE B2 -15 201 116 8 927 457 249 68 17 chr9 44854918 44855094 -79221078 - MER5A DNA MER1_type -4 185 1 8 927 748 248 19 52 chr9 44855585 44855798 -79220374 + B3 SINE B2 1 206 -10 9 927 426 235 43 6 chr9 44856083 44856194 -79219978 + B3 SINE B2 2 119 -76 9 927 349 354 54 33 chr9 44856336 44856576 -79219596 - L1MC LINE L1 -527 5817 5573 9 927 491 308 23 38 chr9 44856576 44856603 -79219569 - L1M4 LINE L1 -644 5534 5508 9 927 838 149 13 33 chr9 44856603 44856756 -79219416 + B1_Mur4 SINE Alu 1 150 0 9 927 505 303 59 16 chr9 44856756 44857110 -79219062 - L1M4 LINE L1 -671 5507 5141 9 927 268 243 61 61 chr9 44857112 44857226 -79218946 - L1M4 LINE L1 -1101 5039 4926 9 927 232 295 63 0 chr9 44857380 44857475 -79218697 - Cheshire DNA MER1_type -1969 451 351 9 927 1232 89 0 6 chr9 44858095 44858276 -79217896 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 927 499 283 27 7 chr9 44858286 44858432 -79217740 - B4 SINE B4 -142 150 2 9 927 24 0 0 0 chr9 44858479 44858503 -79217669 + AT_rich Low_complexity Low_complexity 1 24 0 9 927 934 257 30 0 chr9 44858536 44858738 -79217434 + B3 SINE B2 2 209 -7 9 927 898 131 14 7 chr9 44858846 44858984 -79217188 + B1_Mus2 SINE Alu 2 140 -7 9 927 267 31 0 0 chr9 44859040 44859072 -79217100 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 927 487 150 103 65 chr9 44859173 44859255 -79216917 + B1_Mus1 SINE Alu 15 105 -43 9 927 2890 91 24 85 chr9 44859255 44859761 -79216411 + IAPLTR2_Mm LTR ERVK 1 475 0 9 927 487 150 103 65 chr9 44859761 44859785 -79216387 + B1_Mus1 SINE Alu 106 125 -23 9 927 664 216 167 5 chr9 44860340 44860526 -79215646 + B3 SINE B2 1 216 0 9 927 424 212 75 62 chr9 44860805 44860951 -79215221 - B1F1 SINE Alu -1 148 1 9 927 769 166 15 22 chr9 44861663 44861799 -79214373 - B1_Mur2 SINE Alu -10 139 5 9 927 251 341 87 11 chr9 44862362 44862454 -79213718 - PB1D10 SINE Alu -18 99 1 9 927 200 34 0 33 chr9 44863519 44863549 -79212623 + (GGAA)n Simple_repeat Simple_repeat 2 30 0 9 927 297 221 0 0 chr9 44863819 44863887 -79212285 + A-rich Low_complexity Low_complexity 1 68 0 9 927 216 0 0 0 chr9 44864197 44864221 -79211951 + (TG)n Simple_repeat Simple_repeat 2 25 0 9 927 195 184 0 0 chr9 44864514 44864552 -79211620 + (CATA)n Simple_repeat Simple_repeat 1 38 0 9 927 488 240 48 32 chr9 44864709 44864834 -79211338 + RSINE1 SINE B4 3 129 -36 9 927 833 261 44 0 chr9 44864977 44865180 -79210992 + B3 SINE B2 1 212 -4 9 927 522 243 128 8 chr9 44865192 44865435 -79210737 - L1MB5 LINE L1 -24 6154 5876 9 927 678 260 8 14 chr9 44865673 44865841 -79210331 + ID_B1 SINE B4 84 248 -44 9 927 425 196 10 52 chr9 44866092 44866189 -79209983 + PB1D10 SINE Alu 25 117 0 9 927 215 224 28 9 chr9 44866321 44866429 -79209743 + GA-rich Low_complexity Low_complexity 1 110 0 9 927 351 255 142 13 chr9 44866507 44866662 -79209510 - MER58A DNA MER1_type 0 224 50 9 927 268 344 65 8 chr9 44867768 44867891 -79208281 - MIRb SINE MIR -34 234 105 9 927 211 310 28 0 chr9 44868272 44868343 -79207829 + L3 LINE CR1 3983 4055 -434 9 927 261 268 203 26 chr9 44868491 44868672 -79207500 - MIR SINE MIR -54 208 3 9 927 230 196 0 42 chr9 44869171 44869185 -79206987 + polypurine Low_complexity Low_complexity 3 15 0 9 927 558 229 9 0 chr9 44869185 44869294 -79206878 + PB1D10 SINE Alu 1 110 -7 9 927 230 196 0 42 chr9 44869294 44869327 -79206845 + polypurine Low_complexity Low_complexity 16 48 0 9 927 468 251 114 31 chr9 44869328 44869521 -79206651 + B3 SINE B2 7 215 -1 9 927 185 94 31 0 chr9 44869546 44869578 -79206594 + (GGA)n Simple_repeat Simple_repeat 2 34 0 9 927 441 316 49 9 chr9 44870276 44870436 -79205736 + ID_B1 SINE B4 36 199 -25 9 927 303 233 0 0 chr9 44870579 44870682 -79205490 + (CA)n Simple_repeat Simple_repeat 2 104 0 9 927 1080 190 29 19 chr9 44871369 44871578 -79204594 + B3 SINE B2 1 211 -5 9 927 192 135 0 0 chr9 44871630 44871667 -79204505 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 9 927 379 302 7 61 chr9 44872268 44872416 -79203756 - B1F SINE Alu -2 147 8 9 927 233 283 136 59 chr9 44872428 44872597 -79203575 + L2a LINE L2 3202 3422 -4 9 927 261 346 56 12 chr9 44872958 44873119 -79203053 + MIRc SINE MIR 63 230 -38 9 927 394 244 119 101 chr9 44873221 44873331 -79202841 + L1M2 LINE L1 5372 5474 -817 9 927 751 242 85 32 chr9 44873331 44873519 -79202653 + B3A SINE B2 1 198 0 9 927 394 244 119 101 chr9 44873519 44873627 -79202545 + L1M2 LINE L1 5475 5594 -697 9 927 335 132 0 0 chr9 44873692 44873745 -79202427 + L1MA7 LINE L1 6238 6290 -1 9 927 688 214 90 23 chr9 44873867 44873888 -79202284 - B3 SINE B2 -25 191 169 9 927 320 41 41 0 chr9 44873888 44873937 -79202235 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 9 927 600 40 0 0 chr9 44873939 44874014 -79202158 + (CA)n Simple_repeat Simple_repeat 1 75 0 9 927 736 207 54 0 chr9 44874014 44874166 -79202006 - B3A SINE B2 -48 168 3 9 927 258 32 0 0 chr9 44874272 44874303 -79201869 + (CAA)n Simple_repeat Simple_repeat 2 32 0 9 927 285 239 0 82 chr9 44874780 44874853 -79201319 - RSINE1 SINE B4 0 165 99 9 927 1152 88 0 0 chr9 44875202 44875349 -79200823 - B1_Mus1 SINE Alu 0 148 2 9 927 263 210 0 80 chr9 44875476 44875564 -79200608 + CT-rich Low_complexity Low_complexity 2 82 0 9 927 308 352 71 16 chr9 44875643 44875770 -79200402 + L1M5 LINE L1 5552 5685 -439 9 927 663 214 7 40 chr9 44875880 44876031 -79200141 - B1_Mur2 SINE Alu -1 148 3 9 927 1442 177 192 3 chr9 44876940 44877263 -79198909 - ORR1C2 LTR MaLR 0 384 1 9 927 763 165 75 8 chr9 44877360 44877494 -79198678 - B1_Mus1 SINE Alu -1 147 5 9 927 993 167 11 16 chr9 44877502 44877691 -79198481 - B2_Mm2 SINE B2 -6 189 2 9 927 938 175 0 0 chr9 44877742 44877885 -79198287 + B1_Mur1 SINE Alu 6 148 -1 9 927 243 0 0 0 chr9 44878042 44878069 -79198103 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 927 234 91 0 0 chr9 44878200 44878233 -79197939 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 9 927 904 237 10 10 chr9 44878988 44879184 -79196988 - B3 SINE B2 -19 197 2 9 927 674 269 0 0 chr9 44879185 44879326 -79196846 - RSINE1 SINE B4 -24 141 1 9 927 435 19 0 0 chr9 44879400 44879452 -79196720 + (CAAAC)n Simple_repeat Simple_repeat 4 55 0 9 927 286 131 28 28 chr9 44879460 44879531 -79196641 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 9 927 849 169 190 38 chr9 44879651 44879835 -79196337 - B3 SINE B2 -2 214 3 9 927 1085 302 216 57 chr9 44880388 44880582 -79195590 - L2 LINE L2 -601 2818 2600 9 927 450 0 0 0 chr9 44880582 44880632 -79195540 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 927 1085 302 216 57 chr9 44880632 44880725 -79195447 - L2 LINE L2 -820 2599 2500 9 927 847 191 21 157 chr9 44880725 44880967 -79195205 - B3 SINE B2 -5 211 3 9 927 1085 302 216 57 chr9 44880967 44881648 -79194524 - L2 LINE L2 -920 2499 1600 9 927 822 172 0 0 chr9 44881648 44881782 -79194390 + B1_Mus2 SINE Alu 1 134 -13 9 927 270 115 0 0 chr9 44881783 44881835 -79194337 + (CATA)n Simple_repeat Simple_repeat 3 54 0 9 927 1085 302 216 57 chr9 44881835 44882036 -79194136 - L2 LINE L2 -1820 1599 1403 9 927 488 273 117 14 chr9 44882036 44882181 -79193991 + RSINE1 SINE B4 3 162 -3 9 927 483 48 0 0 chr9 44882183 44882245 -79193927 + (TGAG)n Simple_repeat Simple_repeat 3 64 0 9 927 1085 302 216 57 chr9 44882245 44882360 -79193812 - L2 LINE L2 -2017 1402 1323 9 927 262 306 131 46 chr9 44882358 44882488 -79193684 - MIRb SINE MIR 0 262 122 9 927 233 255 0 0 chr9 44885148 44885195 -79190977 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 9 927 315 298 70 8 chr9 44885637 44885755 -79190417 + MER63D DNA AcHobo 1 125 -85 9 927 328 240 120 37 chr9 44886272 44886380 -79189792 - PB1D10 SINE Alu 0 117 1 9 927 630 216 148 0 chr9 44886506 44886668 -79189504 + Lx8 LINE L1 6936 7121 -352 9 927 246 239 15 7 chr9 44886670 44886805 -79189367 + (CA)n Simple_repeat Simple_repeat 1 136 0 9 927 375 331 7 13 chr9 44886818 44886968 -79189204 + (CA)n Simple_repeat Simple_repeat 2 150 0 9 927 260 27 27 0 chr9 44886982 44887019 -79189153 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 927 432 0 0 0 chr9 44888640 44888688 -79187484 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 927 441 36 0 0 chr9 44888846 44888901 -79187271 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 927 223 344 57 65 chr9 44889038 44889365 -79186807 - L2b LINE L2 -47 3379 3050 9 927 306 281 55 22 chr9 44889506 44889597 -79186575 + MIRm SINE MIR 54 147 -129 9 927 180 0 0 0 chr9 44889794 44889814 -79186358 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 9 927 560 264 69 30 chr9 44890857 44891066 -79185106 - B3A SINE B2 0 216 1 9 927 289 354 12 0 chr9 44891518 44891600 -79184572 + ID SINE ID 2 84 -140 9 927 538 226 0 0 chr9 44892317 44892423 -79183749 - RSINE1 SINE B4 -57 108 3 9 927 828 269 34 117 chr9 44893120 44893563 -79182609 - RMER10A LTR ERVL -25 417 12 9 927 386 225 180 0 chr9 44893555 44893666 -79182506 - B1_Mus2 SINE Alu -16 131 1 9 927 440 232 63 0 chr9 44893689 44893784 -79182388 - RSINE1 SINE B4 -28 137 37 9 927 969 110 0 0 chr9 44895302 44895447 -79180725 + (GAA)n Simple_repeat Simple_repeat 1 145 0 9 927 1326 78 0 0 chr9 44895448 44895628 -79180544 + (GGA)n Simple_repeat Simple_repeat 1 180 0 9 927 188 200 0 20 chr9 44895628 44895679 -79180493 + G-rich Low_complexity Low_complexity 3 52 0 9 927 243 321 23 46 chr9 44897335 44897508 -79178664 + RMER17A2 LTR ERVK 236 404 -502 9 927 528 201 396 0 chr9 44897513 44897662 -79178510 - B3 SINE B2 -7 209 2 9 927 364 253 63 0 chr9 44897925 44898004 -79178168 + ID_B1 SINE B4 82 165 -59 9 927 1898 245 74 9 chr9 44898059 44898489 -79177683 + Lx7 LINE L1 6855 7303 -393 9 927 432 0 0 0 chr9 44898489 44898537 -79177635 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 927 1898 245 74 9 chr9 44898537 44898634 -79177538 + Lx7 LINE L1 7304 7415 -281 9 927 502 251 108 97 chr9 44898821 44899006 -79177166 + B3A SINE B2 12 198 0 9 927 303 136 0 0 chr9 44899836 44899895 -79176277 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1 927 231 264 177 58 chr9 44899960 44900085 -79176087 + MIRc SINE MIR 24 166 -110 1 927 549 277 55 30 chr9 44901483 44901684 -79174488 - B4A SINE B4 0 292 87 1 927 300 261 14 42 chr9 44901683 44901755 -79174417 - RSINE1 SINE B4 -93 72 3 1 927 465 76 0 0 chr9 44902024 44902090 -79174082 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 927 226 238 8 39 chr9 44902195 44902322 -79173850 + GA-rich Low_complexity Low_complexity 3 125 0 1 927 677 265 7 7 chr9 44902776 44902913 -79173259 + RSINE1 SINE B4 4 140 -25 1 927 749 276 41 6 chr9 44903166 44903346 -79172826 - B3 SINE B2 -28 188 4 1 927 1005 134 0 0 chr9 44903485 44903627 -79172545 + B1_Mur4 SINE Alu 1 142 -8 1 927 456 35 0 0 chr9 44903634 44903692 -79172480 + (CAAG)n Simple_repeat Simple_repeat 1 58 0 1 927 245 269 60 0 chr9 44904108 44904175 -79171997 - L2a LINE L2 -261 3165 3095 1 927 559 285 152 34 chr9 44904311 44904725 -79171447 - L2a LINE L2 -545 2874 2412 1 927 244 146 18 35 chr9 44904810 44904867 -79171305 + (TCTCTG)n Simple_repeat Simple_repeat 5 60 0 1 927 253 296 27 27 chr9 44904876 44904949 -79171223 - ID4_ SINE ID -9 74 2 1 927 294 207 229 12 chr9 44904961 44905044 -79171128 - PB1D10 SINE Alu -5 112 12 1 927 1876 121 10 110 chr9 44905143 44905252 -79170920 + RLTR15 LTR ERVK 1 98 -261 1 927 1276 34 0 0 chr9 44905252 44905400 -79170772 - B1_Mus1 SINE Alu 0 148 1 1 927 1876 121 10 110 chr9 44905400 44905689 -79170483 + RLTR15 LTR ERVK 99 359 0 1 927 252 315 107 9 chr9 44906152 44906264 -79169908 - MER96 DNA hAT -24 151 29 1 927 298 312 151 7 chr9 44907350 44907489 -79168683 - MER2 DNA MER2_type -5 340 182 1 927 265 261 45 30 chr9 44907656 44907723 -79168449 - MER2 DNA MER2_type -269 76 9 1 927 405 255 69 0 chr9 44909589 44909691 -79166481 - PB1D7 SINE Alu -11 109 1 1 927 323 242 0 0 chr9 44909913 44909975 -79166197 - ID4_ SINE ID -10 73 12 1 927 227 175 25 0 chr9 44911619 44911659 -79164513 + C-rich Low_complexity Low_complexity 3 43 0 1 927 192 40 0 0 chr9 44912014 44912039 -79164133 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 927 272 102 20 0 chr9 44912142 44912191 -79163981 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1 927 903 260 24 5 chr9 44912671 44912880 -79163292 + ID_B1 SINE B4 3 215 -9 1 927 249 33 0 0 chr9 44912886 44912916 -79163256 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 927 497 258 198 21 chr9 44912925 44913163 -79163009 + B4 SINE B4 2 281 -11 1 927 276 200 0 0 chr9 44913200 44913260 -79162912 + (CATA)n Simple_repeat Simple_repeat 4 63 0 1 927 417 310 78 47 chr9 44913260 44913517 -79162655 - RMER12 LTR ERVK -334 988 724 1 927 180 213 145 16 chr9 44913793 44913855 -79162317 + L4 LINE RTE 617 686 -1343 1 927 592 285 58 26 chr9 44914264 44914455 -79161717 + B3A SINE B2 2 198 0 1 927 432 184 0 50 chr9 44914477 44914557 -79161615 + B1_Mus2 SINE Alu 2 77 -70 1 927 361 291 13 108 chr9 44914575 44914733 -79161439 + B3A SINE B2 2 144 -54 1 927 636 14 0 0 chr9 44914746 44914819 -79161353 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 927 276 260 273 8 chr9 44914946 44915074 -79161098 + MER2 DNA MER2_type 11 172 -173 1 927 237 246 193 0 chr9 44915171 44915228 -79160944 + ID_B1 SINE B4 146 213 -11 1 927 345 217 87 0 chr9 44915344 44915413 -79160759 - ID4_ SINE ID -8 75 1 1 927 21 0 0 0 chr9 44915938 44915959 -79160213 + AT_rich Low_complexity Low_complexity 1 21 0 1 927 25 0 0 0 chr9 44916353 44916378 -79159794 + AT_rich Low_complexity Low_complexity 1 25 0 1 927 982 201 95 30 chr9 44916384 44916584 -79159588 + B3 SINE B2 1 213 -3 1 927 2542 238 117 28 chr9 44916895 44917757 -79158415 + Lx8 LINE L1 6362 7341 -132 1 927 866 241 53 29 chr9 44917765 44917917 -79158255 + B3 SINE B2 3 163 -53 1 927 318 67 0 0 chr9 44917917 44917962 -79158210 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 927 866 241 53 29 chr9 44917962 44918018 -79158154 + B3 SINE B2 164 216 0 1 927 384 170 94 11 chr9 44918035 44918120 -79158052 - PB1D10 SINE Alu -12 137 26 1 927 378 0 0 0 chr9 44918844 44918886 -79157286 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 927 231 257 147 10 chr9 44919016 44919118 -79157054 - Tigger5 DNA MER2_type -1 2405 2290 1 927 678 305 40 40 chr9 44919123 44919345 -79156827 - Tigger5 DNA MER2_type -2176 230 9 1 927 26 0 0 0 chr9 44919380 44919406 -79156766 + AT_rich Low_complexity Low_complexity 1 26 0 1 927 1919 184 88 8 chr9 44919518 44919902 -79156270 - MTD LTR MaLR 0 419 5 1 927 309 271 0 0 chr9 44919905 44919964 -79156208 - RSINE1 SINE B4 -104 61 3 1 927 28 0 0 64 chr9 44920150 44920197 -79155975 + AT_rich Low_complexity Low_complexity 1 44 0 1 927 231 88 0 0 chr9 44920200 44920234 -79155938 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 927 905 206 106 0 chr9 44920240 44920420 -79155752 - B3 SINE B2 -17 199 1 1 927 252 0 0 0 chr9 44920990 44921018 -79155154 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 927 360 0 0 0 chr9 44921431 44921471 -79154701 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 927 213 309 46 102 chr9 44922168 44922276 -79153896 + L2c LINE L2 3251 3352 -35 1 927 346 323 146 17 chr9 44922294 44922608 -79153564 + MER44B DNA MER2_type 3 547 -3 1 927 281 384 2 20 chr9 44923099 44923252 -79152920 - MER5A1 DNA MER1_type -11 155 9 1 927 219 204 102 0 chr9 44924472 44924521 -79151651 + MIRc SINE MIR 47 100 -168 1 927 219 139 0 0 chr9 44925119 44925155 -79151017 + (TATG)n Simple_repeat Simple_repeat 1 36 0 1 927 288 0 0 0 chr9 44925181 44925213 -79150959 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 927 195 152 0 0 chr9 44925217 44925263 -79150909 + GA-rich Low_complexity Low_complexity 1 46 0 1 927 594 242 23 92 chr9 44925263 44925436 -79150736 - RSINE1 SINE B4 -1 164 4 1 927 264 167 0 0 chr9 44925530 44925578 -79150594 + CT-rich Low_complexity Low_complexity 1 48 0 1 927 395 235 0 93 chr9 44925588 44925696 -79150476 - PB1D10 SINE Alu -17 100 3 1 927 468 51 0 0 chr9 44926512 44926571 -79149601 + (CCA)n Simple_repeat Simple_repeat 1 59 0 1 927 489 238 0 28 chr9 44927077 44927185 -79148987 - PB1D9 SINE Alu -15 105 1 1 927 231 264 11 11 chr9 44927290 44927382 -79148790 + CT-rich Low_complexity Low_complexity 2 93 0 1 927 254 179 45 0 chr9 44927291 44927358 -79148814 + (TCTG)n Simple_repeat Simple_repeat 3 72 0 1 927 384 326 23 23 chr9 44927709 44927841 -79148331 - MIR SINE MIR -83 179 48 1 927 21 0 0 0 chr9 44927986 44928007 -79148165 + AT_rich Low_complexity Low_complexity 1 21 0 1 927 252 186 188 128 chr9 44928611 44928728 -79147444 - L2a LINE L2 -11 3415 3253 1 927 333 261 96 15 chr9 44928800 44928936 -79147236 - MIRb SINE MIR -31 237 91 1 927 182 65 0 61 chr9 44931064 44931097 -79145075 + (TGGGGG)n Simple_repeat Simple_repeat 3 33 0 1 927 203 314 86 91 chr9 44931470 44931691 -79144481 + L2a LINE L2 3205 3424 -2 1 927 862 266 10 15 chr9 44931691 44931893 -79144279 + ID_B1 SINE B4 2 202 -22 1 927 308 83 21 0 chr9 44933249 44933297 -79142875 + (CCCCCA)n Simple_repeat Simple_repeat 3 51 0 1 927 258 352 56 0 chr9 44933889 44934014 -79142158 - MIRc SINE MIR -112 156 25 1 927 260 53 26 0 chr9 44935378 44935416 -79140756 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 1 927 319 227 0 15 chr9 44935960 44936027 -79140145 - L2b LINE L2 -1 3374 3309 1 927 290 87 0 21 chr9 44936086 44936133 -79140039 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1 927 417 39 0 0 chr9 44936720 44936771 -79139401 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1 927 1165 81 0 0 chr9 44936773 44936921 -79139251 - B1_Mus1 SINE Alu 0 148 1 1 927 454 270 20 0 chr9 44938680 44938780 -79137392 + RSINE1 SINE B4 7 108 -57 1 927 336 48 0 0 chr9 44938785 44938827 -79137345 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 927 249 310 177 0 chr9 44940978 44941091 -79135081 + L3 LINE CR1 4338 4470 -19 1 927 306 0 0 0 chr9 44941236 44941270 -79134902 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 927 642 184 70 0 chr9 44941270 44941384 -79134788 - RSINE1 SINE B4 -41 124 3 1 927 225 262 48 16 chr9 44941804 44941866 -79134306 - MIRb SINE MIR -1 267 204 1 927 207 345 0 33 chr9 44942370 44942460 -79133712 + CT-rich Low_complexity Low_complexity 4 90 0 1 927 484 151 176 50 chr9 44945344 44945463 -79130709 + B1_Mus2 SINE Alu 6 139 -8 1 927 218 356 22 0 chr9 44948699 44948789 -79127383 - MIR SINE MIR -76 132 41 1 927 180 0 0 0 chr9 44948968 44948988 -79127184 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 927 345 100 0 0 chr9 44950037 44950087 -79126085 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 927 484 286 182 17 chr9 44950088 44950319 -79125853 - B4 SINE B4 -23 269 1 1 927 465 257 56 56 chr9 44951415 44951559 -79124613 + ID_B1 SINE B4 81 224 0 1 927 459 241 36 0 chr9 44951732 44951844 -79124328 - PB1D7 SINE Alu 0 120 5 1 927 648 0 0 0 chr9 44951870 44951942 -79124230 + (TTC)n Simple_repeat Simple_repeat 2 73 0 1 927 490 295 94 87 chr9 44951998 44952273 -79123899 - B4A SINE B4 -14 278 2 1 927 310 301 50 29 chr9 44952722 44952862 -79123310 + MIRb SINE MIR 82 224 -44 1 927 414 0 0 0 chr9 44953019 44953065 -79123107 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 927 435 83 0 0 chr9 44953360 44953420 -79122752 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 927 292 262 12 0 chr9 44953546 44953626 -79122546 + L3b LINE CR1 209 289 -193 1 927 192 77 0 0 chr9 44954446 44954472 -79121700 + (A)n Simple_repeat Simple_repeat 1 26 0 1 928 346 348 8 0 chr9 44957914 44958032 -79118140 + PB1D7 SINE Alu 1 119 -1 1 928 272 266 0 0 chr9 44958120 44958184 -79117988 + ID4_ SINE ID 2 65 -18 1 928 576 193 29 15 chr9 44960377 44960514 -79115658 - ID_B1 SINE B4 -5 219 81 1 928 254 257 14 14 chr9 44960740 44960811 -79115361 + MIRb SINE MIR 128 198 -70 1 928 26 0 0 0 chr9 44962215 44962241 -79113931 + AT_rich Low_complexity Low_complexity 1 26 0 1 928 838 276 0 0 chr9 44962535 44962738 -79113434 + B4 SINE B4 21 223 -69 1 928 249 109 0 0 chr9 44962743 44962789 -79113383 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 1 928 279 213 0 0 chr9 44962854 44962929 -79113243 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 928 304 0 0 89 chr9 44962946 44962991 -79113181 + HAL1-3A_ME LINE L1 1976 2016 -842 1 928 1612 174 141 0 chr9 44964412 44964612 -79111560 + ORR1D1 LTR MaLR 2 228 -146 1 928 207 0 0 0 chr9 44964612 44964635 -79111537 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 1 928 1612 174 141 0 chr9 44964635 44964761 -79111411 + ORR1D1 LTR MaLR 229 373 -1 1 928 238 346 30 36 chr9 44964775 44964943 -79111229 - L1MEc LINE L1 -6190 210 44 1 928 440 304 85 97 chr9 44965060 44965439 -79110733 - MLT1A1 LTR MaLR 0 467 35 1 928 559 205 33 0 chr9 44965642 44965764 -79110408 + L1MC1 LINE L1 6199 6324 -9 1 928 1078 277 58 19 chr9 44965775 44966139 -79110033 - MTEb LTR MaLR 0 379 2 1 928 25 0 0 0 chr9 44966857 44966882 -79109290 + AT_rich Low_complexity Low_complexity 1 25 0 1 928 234 105 0 0 chr9 44966882 44966920 -79109252 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 928 398 152 0 0 chr9 44966946 44967005 -79109167 - RSINE1 SINE B4 -36 129 71 1 928 425 290 20 7 chr9 44967346 44967492 -79108680 - ORR1E LTR MaLR -210 149 2 1 928 352 410 48 16 chr9 44967592 44967840 -79108332 - L1MEg LINE L1 -4171 1913 1658 1 928 608 200 201 13 chr9 44968056 44968260 -79107912 + Lx7 LINE L1 6804 7083 -613 1 928 7684 63 0 6 chr9 44968267 44969546 -79106626 - L1_Mus2 LINE L1 -9 6557 5286 1 928 8229 37 30 0 chr9 44969548 44971038 -79105134 - L1Md_T LINE L1 -11 6571 5012 1 928 779 250 64 14 chr9 44971035 44971254 -79104918 + Lx7 LINE L1 7072 7301 -395 1 928 7157 197 76 30 chr9 44971259 44973176 -79102996 + MYSERV16_I-int LTR ERVK 319 2324 -2 1 928 2225 111 123 8 chr9 44973177 44973576 -79102596 + BGLII_A LTR ERVK 1 445 0 1 928 226 117 16 62 chr9 44973601 44973665 -79102507 + T-rich Low_complexity Low_complexity 6 66 0 1 928 1842 154 40 83 chr9 44973729 44974104 -79102068 + ORR1B2 LTR MaLR 1 359 -8 1 928 305 282 59 118 chr9 44974130 44974299 -79101873 - MIR SINE MIR -29 233 75 1 928 330 115 19 0 chr9 44974373 44974425 -79101747 - tRNA-Ala-GCY_ tRNA tRNA -3 72 20 1 928 292 268 28 0 chr9 44974378 44974449 -79101723 - ID SINE ID -150 74 2 1 928 413 205 172 35 chr9 44974463 44974579 -79101593 - B1F1 SINE Alu 0 149 18 1 928 313 338 60 7 chr9 44974581 44974730 -79101442 - L1MB3 LINE L1 0 6183 6027 1 928 865 163 0 0 chr9 44974730 44974877 -79101295 + B1_Mus2 SINE Alu 1 147 0 1 928 264 186 0 0 chr9 44974889 44974948 -79101224 + (CCA)n Simple_repeat Simple_repeat 3 61 0 1 928 458 239 164 42 chr9 44974979 44975193 -79100979 - L1MB3 LINE L1 -102 6081 5842 1 928 345 315 71 97 chr9 44975448 44975715 -79100457 + Lx8 LINE L1 7033 7292 -181 1 928 1423 321 130 23 chr9 44975818 44976981 -79099191 + RMER15-int LTR ERVL 311 1597 -3402 1 928 918 191 27 0 chr9 44977058 44977246 -79098926 + B3 SINE B2 5 197 -19 1 928 977 101 14 0 chr9 44977293 44977432 -79098740 + B1_Mus2 SINE Alu 1 141 -6 1 928 299 65 0 21 chr9 44977435 44977482 -79098690 + (TAAAA)n Simple_repeat Simple_repeat 1 46 0 1 928 1078 350 60 35 chr9 44977524 44977869 -79098303 + RMER15-int LTR ERVL 1664 2016 -2983 1 928 1846 133 82 52 chr9 44977869 44978234 -79097938 + ORR1C1 LTR MaLR 1 376 -2 1 928 1078 315 334 23 chr9 44978234 44978537 -79097635 + RMER15-int LTR ERVL 2017 2415 -2584 1 928 1347 251 50 43 chr9 44978571 44978919 -79097253 + RMER15-int LTR ERVL 4147 4497 -502 1 928 3007 17 0 0 chr9 44978919 44979265 -79096907 + ORR1A0 LTR MaLR 1 346 0 1 928 1347 251 50 43 chr9 44979265 44979333 -79096839 + RMER15-int LTR ERVL 4498 4566 -433 1 928 1044 236 62 82 chr9 44979608 44979949 -79096223 + RMER15-int LTR ERVL 4536 4869 -130 1 928 1352 247 43 43 chr9 44979978 44980397 -79095775 + MTD LTR MaLR 1 419 0 1 928 186 103 0 0 chr9 44982140 44982169 -79094003 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1 928 609 333 108 32 chr9 44983668 44984046 -79092126 + MER74B LTR ERVL 56 462 -160 1 928 1242 27 0 0 chr9 44984979 44985127 -79091045 - B1_Mus1 SINE Alu 0 148 1 1 928 692 253 37 5 chr9 44986436 44986627 -79089545 + B3A SINE B2 2 198 0 1 928 339 309 57 29 chr9 44987145 44987285 -79088887 + MLT1A1 LTR MaLR 265 408 0 1 928 1493 90 28 20 chr9 44987904 44988153 -79088019 + Lx LINE L1 6398 6648 -6 1 928 212 0 0 35 chr9 44988173 44988202 -79087970 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 928 271 333 38 91 chr9 44989582 44989714 -79086458 + MIR3 SINE MIR 45 169 -39 1 928 225 368 38 0 chr9 44990236 44990342 -79085830 + MER117 DNA MER1_type 41 150 -47 1 928 187 267 147 97 chr9 44990481 44990667 -79085505 + MIRb SINE MIR 24 215 -53 1 928 409 202 0 12 chr9 44990769 44990854 -79085318 - BC1_Mm scRNA scRNA -66 86 3 1 928 389 138 12 0 chr9 44991121 44991201 -79084971 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 1 928 484 245 80 89 chr9 44994383 44994620 -79081552 - L1MA5 LINE L1 0 6300 6066 1 928 250 292 0 179 chr9 44994674 44994853 -79081319 - B1F1 SINE Alu -2 147 1 1 928 728 256 83 0 chr9 44994853 44994932 -79081240 - ID_B1 SINE B4 -129 95 2 1 928 210 314 0 0 chr9 44995058 44995109 -79081063 - L2c LINE L2 -73 3314 3264 1 928 450 349 107 37 chr9 44995582 44995909 -79080263 + ORR1E LTR MaLR 1 350 -9 1 928 450 295 146 31 chr9 44996107 44996401 -79079771 + L2a LINE L2 3075 3402 -24 1 928 536 0 16 0 chr9 44997226 44997290 -79078882 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 928 288 0 0 0 chr9 44998039 44998071 -79078101 + (T)n Simple_repeat Simple_repeat 1 32 0 1 928 369 265 27 73 chr9 44998529 44998825 -79077347 + L1ME1 LINE L1 5353 5636 -537 1 928 378 0 0 0 chr9 44998845 44998887 -79077285 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 928 348 267 111 30 chr9 44998891 44999026 -79077146 + L1ME1 LINE L1 5693 5838 -402 1 928 486 211 0 0 chr9 44999044 44999134 -79077038 - B3 SINE B2 -10 206 117 1 928 1221 241 10 14 chr9 44999224 44999514 -79076658 + B4A SINE B4 2 290 -2 1 928 218 267 0 0 chr9 44999517 44999562 -79076610 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 928 345 47 0 0 chr9 45000724 45000767 -79075405 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 928 567 66 0 0 chr9 45004941 45005017 -79071155 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 928 203 0 0 36 chr9 45005202 45005230 -79070942 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 928 212 304 244 0 chr9 45005946 45006061 -79070111 + MIRb SINE MIR 4 146 -122 4 928 296 172 11 0 chr9 45006062 45006149 -79070023 + GA-rich Low_complexity Low_complexity 1 88 0 5 928 541 260 10 0 chr9 45007013 45007117 -79069055 - B1F SINE Alu -44 105 1 6 928 306 268 0 40 chr9 45007058 45007132 -79069040 - B4A SINE B4 -148 144 74 7 928 237 282 38 68 chr9 45007416 45007549 -79068623 + MIRc SINE MIR 10 138 -130 8 928 182 271 69 23 chr9 45009039 45009126 -79067046 + L4 LINE RTE 1472 1562 -467 9 928 405 0 0 0 chr9 45011556 45011601 -79064571 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 928 776 262 15 19 chr9 45013686 45013892 -79062280 - ID_B1 SINE B4 -15 209 5 1 928 238 345 11 11 chr9 45014054 45014142 -79062030 + Arthur1 DNA Tip100 37 124 -3823 1 928 192 40 0 0 chr9 45014151 45014176 -79061996 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 928 403 333 28 0 chr9 45014200 45014308 -79061864 + B3A SINE B2 1 111 -87 1 928 795 217 0 0 chr9 45014366 45014509 -79061663 + B1_Mur2 SINE Alu 1 143 -6 1 928 614 197 11 27 chr9 45014556 45014739 -79061433 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 928 257 329 155 19 chr9 45014781 45014936 -79061236 + MIRb SINE MIR 26 201 -67 1 928 204 40 0 0 chr9 45015447 45015472 -79060700 + (CCCA)n Simple_repeat Simple_repeat 4 28 0 1 928 270 265 35 35 chr9 45015640 45015726 -79060446 + MER5A1 DNA MER1_type 49 134 -32 1 928 189 0 0 0 chr9 45015756 45015777 -79060395 + (CTG)n Simple_repeat Simple_repeat 2 22 0 2 928 255 31 0 0 chr9 45016714 45016746 -79059426 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 928 2306 146 98 0 chr9 45016773 45017150 -79059022 - MTC LTR MaLR -3 418 5 2 928 535 229 8 83 chr9 45017170 45017230 -79058942 - ID_B1 SINE B4 0 224 173 2 928 2091 155 104 10 chr9 45017230 45017615 -79058557 + MTC LTR MaLR 1 421 0 2 928 535 229 8 83 chr9 45017615 45017687 -79058485 - ID_B1 SINE B4 -52 172 102 2 928 917 243 33 5 chr9 45017689 45017904 -79058268 - B4A SINE B4 -71 221 1 2 928 413 305 46 8 chr9 45018108 45018267 -79057905 + MIR SINE MIR 58 223 -45 2 928 285 260 26 0 chr9 45019128 45019205 -79056967 - MIRc SINE MIR -117 151 73 2 928 312 303 85 105 chr9 45019318 45019565 -79056607 + MLT1C LTR MaLR 84 325 -142 2 928 230 383 16 99 chr9 45019862 45020175 -79055997 + ORR1E LTR MaLR 60 346 -13 2 928 269 357 48 27 chr9 45020307 45020454 -79055718 + MLT1C LTR MaLR 309 458 -9 2 928 510 343 112 57 chr9 45021027 45021484 -79054688 - MLT2B3 LTR ERVL -72 482 1 3 928 401 272 93 20 chr9 45021659 45021809 -79054363 - MLT1A1 LTR MaLR 0 408 248 3 928 593 96 0 0 chr9 45021965 45022048 -79054124 + URR1B DNA MER1_type 143 225 0 3 928 384 275 217 25 chr9 45022095 45022303 -79053869 - ORR1E LTR MaLR -138 232 1 3 928 230 330 105 19 chr9 45022400 45022505 -79053667 - MLT1A1 LTR MaLR -215 150 37 3 928 208 233 0 0 chr9 45022690 45022733 -79053439 - L2 LINE L2 -675 2744 2702 3 928 2702 40 0 58 chr9 45022803 45023147 -79053025 - ORR1A2 LTR MaLR -3 324 1 3 928 226 234 57 80 chr9 45023147 45023226 -79052946 - MIRb SINE MIR -66 202 125 3 928 200 328 183 32 chr9 45023916 45024162 -79052010 - L2b LINE L2 -5 3370 3088 3 928 832 228 0 7 chr9 45024309 45024459 -79051713 + B3 SINE B2 11 159 -57 3 928 282 29 0 0 chr9 45024471 45024506 -79051666 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 928 293 330 27 0 chr9 45024613 45024725 -79051447 + Charlie7 DNA MER1_type 2 116 -2496 4 928 216 0 0 0 chr9 45024910 45024934 -79051238 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 928 516 217 0 0 chr9 45025172 45025264 -79050908 + RSINE1 SINE B4 12 103 -62 4 928 484 333 6 97 chr9 45025935 45026111 -79050061 + RSINE1 SINE B4 6 165 0 4 928 453 234 178 0 chr9 45026359 45026466 -79049706 + B1_Mur1 SINE Alu 4 129 -20 4 928 810 116 0 0 chr9 45026624 45026753 -79049419 + (TG)n Simple_repeat Simple_repeat 2 130 0 4 928 468 35 0 0 chr9 45028086 45028144 -79048028 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 928 634 237 0 0 chr9 45028144 45028258 -79047914 - RSINE1 SINE B4 -41 124 11 4 928 303 273 11 54 chr9 45028909 45029002 -79047170 - PB1D10 SINE Alu 0 117 29 4 928 533 247 65 94 chr9 45030597 45030798 -79045374 - MTEb LTR MaLR -1 378 184 4 928 213 39 0 0 chr9 45030799 45030825 -79045347 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 928 385 238 103 52 chr9 45030828 45030983 -79045189 - B4A SINE B4 0 165 2 5 928 322 297 55 0 chr9 45030983 45031066 -79045106 - MTEb LTR MaLR -199 180 93 4 928 749 279 23 37 chr9 45031248 45031464 -79044708 - B3 SINE B2 -3 213 1 5 928 522 246 16 54 chr9 45031474 45031603 -79044569 - ID_B1 SINE B4 -7 217 94 5 928 468 0 0 0 chr9 45033671 45033723 -79042449 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 928 275 299 111 31 chr9 45034268 45034430 -79041742 - Charlie7 DNA MER1_type -5 2607 2433 5 928 1116 231 79 82 chr9 45034758 45035027 -79041145 - B4A SINE B4 0 292 22 5 928 1413 60 16 16 chr9 45035027 45035212 -79040960 + B2_Mm2 SINE B2 2 186 -9 5 928 1116 231 79 82 chr9 45035212 45035234 -79040938 - B4A SINE B4 -271 21 2 5 928 1118 118 215 0 chr9 45035535 45035721 -79040451 - URR1A DNA MER1_type 0 226 1 5 928 253 320 21 0 chr9 45035721 45035818 -79040354 - MER113A DNA MER1_type -141 173 75 5 928 297 267 0 0 chr9 45036554 45036614 -79039558 - MTEb LTR MaLR -222 157 98 6 928 354 273 128 32 chr9 45036571 45036696 -79039476 - MLT2B3 LTR ERVL -384 170 34 6 928 1784 161 35 21 chr9 45036696 45037140 -79039032 - RMER2 LTR ERV1 0 567 1 6 928 234 0 0 0 chr9 45037941 45037967 -79038205 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 928 376 225 0 48 chr9 45037970 45038054 -79038118 - B4 SINE B4 0 292 213 6 928 962 84 7 27 chr9 45038059 45038097 -79038075 - B2_Mm2 SINE B2 -3 192 157 6 928 2104 101 12 51 chr9 45038097 45038432 -79037740 - RLTRETN_Mm LTR ERVK 0 322 1 6 928 962 84 7 27 chr9 45038432 45038539 -79037633 - B2_Mm2 SINE B2 -39 156 50 6 928 540 284 15 22 chr9 45038529 45038666 -79037506 - B4 SINE B4 -140 152 17 6 928 186 286 111 0 chr9 45038675 45038738 -79037434 - L4 LINE RTE -1307 722 653 6 928 190 361 87 19 chr9 45038760 45038921 -79037251 - L4 LINE RTE -1443 586 415 6 928 1105 276 21 60 chr9 45039763 45040145 -79036027 - Lx8 LINE L1 -403 7070 6704 6 928 267 79 0 0 chr9 45040159 45040197 -79035975 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 6 928 218 130 364 18 chr9 45040197 45040252 -79035920 - B4 SINE B4 -218 74 1 7 928 342 45 0 0 chr9 45040291 45040335 -79035837 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 928 435 19 0 0 chr9 45040394 45040446 -79035726 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 928 399 214 91 8 chr9 45040537 45040669 -79035503 - L1M4b LINE L1 -4615 2719 2577 7 928 308 24 24 0 chr9 45040714 45040755 -79035417 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 928 364 239 14 0 chr9 45040828 45040899 -79035273 - tRNA-Val-GTA tRNA tRNA -3 73 2 7 928 294 269 26 49 chr9 45040962 45041084 -79035088 - L1M4b LINE L1 -4956 2378 2210 7 928 321 330 196 35 chr9 45041090 45041523 -79034649 - L1M4b LINE L1 -4805 2297 1795 7 928 384 222 198 69 chr9 45041531 45041647 -79034525 - PB1 SINE Alu 0 149 19 7 928 1229 171 265 33 chr9 45041992 45042385 -79033787 + RMER1C Other Other 856 1339 -3 7 928 1194 56 0 0 chr9 45042468 45042611 -79033561 + B1_Mus1 SINE Alu 2 144 -4 7 928 393 188 0 0 chr9 45042686 45042766 -79033406 + CT-rich Low_complexity Low_complexity 3 82 0 7 928 427 283 166 112 chr9 45044094 45044353 -79031819 + B4 SINE B4 3 275 -17 8 928 405 39 0 0 chr9 45044356 45044407 -79031765 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 928 342 0 0 0 chr9 45044407 45044444 -79031728 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 928 1485 70 38 0 chr9 45044458 45044644 -79031528 - B2_Mm2 SINE B2 -2 193 1 8 928 363 250 70 18 chr9 45045008 45045122 -79031050 - MTEa LTR MaLR -53 326 207 8 928 226 307 13 13 chr9 45045184 45045260 -79030912 - L1M4b LINE L1 -6279 808 733 7 928 1383 272 136 28 chr9 45045410 45045526 -79030646 - Lx8 LINE L1 -3 7470 7346 8 928 270 0 0 0 chr9 45045526 45045556 -79030616 + (TC)n Simple_repeat Simple_repeat 2 31 0 8 928 1383 272 136 28 chr9 45045556 45045975 -79030197 - Lx8 LINE L1 -128 7345 6877 8 928 986 289 168 9 chr9 45046511 45046857 -79029315 + MTD LTR MaLR 3 403 -16 8 928 483 18 0 0 chr9 45046857 45046913 -79029259 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 8 928 233 300 29 0 chr9 45046926 45046996 -79029176 + L2a LINE L2 3286 3357 -69 8 928 475 291 24 0 chr9 45047160 45047287 -79028885 - MLT1A1 LTR MaLR -32 376 247 9 928 307 262 38 48 chr9 45047380 45047489 -79028683 - MamGypLTR1d LTR Gypsy -1 921 732 9 928 253 203 45 45 chr9 45048218 45048285 -79027887 - B1_Mur2 SINE Alu -43 106 40 9 928 313 372 64 30 chr9 45048430 45048663 -79027509 - MIRb SINE MIR 0 268 28 9 928 374 294 28 0 chr9 45050129 45050238 -79025934 - PB1D10 SINE Alu 0 117 6 9 928 899 179 6 0 chr9 45050263 45050442 -79025730 + CT-rich Low_complexity Low_complexity 1 180 0 9 928 549 0 0 0 chr9 45050442 45050503 -79025669 + (TTTC)n Simple_repeat Simple_repeat 4 64 0 9 928 400 295 26 43 chr9 45050506 45050521 -79025651 - B1F SINE Alu -9 140 126 9 928 288 0 0 0 chr9 45050521 45050553 -79025619 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 928 400 295 26 43 chr9 45050553 45050654 -79025518 - B1F SINE Alu -24 125 26 9 928 917 237 59 0 chr9 45050562 45050748 -79025424 - ID_B1 SINE B4 -26 198 2 9 928 321 297 0 0 chr9 45051316 45051471 -79024701 + (TCCA)n Simple_repeat Simple_repeat 4 158 0 1 928 396 248 13 7 chr9 45051504 45051654 -79024518 + (CCCA)n Simple_repeat Simple_repeat 3 153 0 1 928 479 228 7 0 chr9 45051625 45051774 -79024398 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 1 928 218 348 16 33 chr9 45051800 45051922 -79024250 - L2c LINE L2 -1 3386 3267 1 928 225 83 0 0 chr9 45054787 45054823 -79021349 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1 928 1207 54 7 0 chr9 45054823 45054970 -79021202 - B1_Mus1 SINE Alu 0 148 1 1 928 402 132 0 0 chr9 45056446 45056522 -79019650 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 928 459 0 0 0 chr9 45056842 45056893 -79019279 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 928 213 119 0 0 chr9 45058066 45058108 -79018064 + (A)n Simple_repeat Simple_repeat 1 42 0 1 928 613 253 161 32 chr9 45059222 45059471 -79016701 + MLT1A LTR MaLR 4 284 -90 1 928 629 297 35 0 chr9 45059732 45059877 -79016295 + RSINE1 SINE B4 5 154 -11 1 928 467 240 83 55 chr9 45062011 45062192 -79013980 - MIRc SINE MIR -81 187 2 1 928 186 133 0 0 chr9 45062195 45062225 -79013947 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 928 610 287 168 39 chr9 45064548 45064780 -79011392 + MTEa LTR MaLR 3 264 -115 1 928 271 200 52 44 chr9 45064788 45064924 -79011248 + (CACGC)n Simple_repeat Simple_repeat 4 140 0 1 928 580 215 65 29 chr9 45064925 45065064 -79011108 + MTEa LTR MaLR 236 379 0 1 928 451 295 110 24 chr9 45065616 45065872 -79010300 + L2a LINE L2 2961 3238 -137 1 928 2231 161 76 13 chr9 45065872 45066268 -79009904 + MTC LTR MaLR 1 421 0 1 928 413 334 142 46 chr9 45066268 45066384 -79009788 + L2a LINE L2 3239 3369 -6 1 928 352 294 54 23 chr9 45066712 45066841 -79009331 - MIRb SINE MIR -102 166 34 1 928 252 59 0 0 chr9 45067599 45067633 -79008539 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 928 288 212 0 0 chr9 45067633 45067699 -79008473 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 1 928 239 230 157 28 chr9 45068082 45068182 -79007990 + MIR SINE MIR 77 192 -84 1 928 313 336 34 3 chr9 45068792 45068924 -79007248 + MIR SINE MIR 41 170 -92 1 928 359 284 14 28 chr9 45068939 45069076 -79007096 - MIRb SINE MIR -62 206 73 1 928 342 193 52 17 chr9 45070862 45070978 -79005194 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 928 267 31 0 0 chr9 45070999 45071031 -79005141 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 928 240 35 0 0 chr9 45071093 45071122 -79005050 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 928 719 194 0 23 chr9 45071136 45071268 -79004904 - B1_Mur1 SINE Alu -16 133 5 1 928 748 240 109 33 chr9 45071270 45071481 -79004691 - B4A SINE B4 -60 232 6 1 928 798 160 0 59 chr9 45071777 45071930 -79004242 + B1_Mus1 SINE Alu 3 146 -2 1 928 240 293 19 87 chr9 45071791 45071952 -79004220 + B4A SINE B4 97 246 -46 1 928 707 87 0 9 chr9 45071952 45071971 -79004201 + (GA)n Simple_repeat Simple_repeat 1 19 0 1 928 831 112 0 0 chr9 45071971 45072096 -79004076 + (GAA)n Simple_repeat Simple_repeat 3 127 0 1 928 707 87 0 9 chr9 45072096 45072181 -79003991 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 928 237 241 34 17 chr9 45072646 45072705 -79003467 - ID SINE ID -151 73 14 1 928 543 271 69 76 chr9 45072875 45073166 -79003006 - B4 SINE B4 -2 290 2 1 928 373 368 25 35 chr9 45075398 45075598 -79000574 - MIRb SINE MIR -49 219 22 1 928 254 95 0 23 chr9 45077442 45077485 -78998687 + (CCCCCT)n Simple_repeat Simple_repeat 6 47 0 1 928 493 337 0 54 chr9 45078068 45078272 -78997900 - RMER30 DNA MER1_type -2 200 8 1 928 303 28 0 0 chr9 45078569 45078605 -78997567 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 928 4194 66 6 4 chr9 45080796 45081340 -78994832 - L1_Mus3 LINE L1 -1 6637 6093 1 928 3969 72 6 2 chr9 45081341 45081983 -78994189 + L1_Mus3 LINE L1 5470 6113 -525 1 928 1803 204 58 37 chr9 45083444 45083876 -78992296 + BGLII_B LTR ERVK 1 441 0 1 928 438 20 0 0 chr9 45084568 45084619 -78991553 + (CCA)n Simple_repeat Simple_repeat 1 51 0 1 928 240 348 77 12 chr9 45085781 45085944 -78990228 + MIRc SINE MIR 16 191 -77 1 928 403 228 109 42 chr9 45086769 45086934 -78989238 - Helitron1Nb_Mam RC Helitron -656 460 285 1 928 648 186 0 30 chr9 45086945 45087495 -78988677 + (CA)n Simple_repeat Simple_repeat 1 533 0 1 928 535 306 111 13 chr9 45087509 45087744 -78988428 - Helitron1Nb_Mam RC Helitron -787 329 72 1 928 180 121 0 57 chr9 45088118 45088153 -78988019 - MIRm SINE MIR -118 158 126 1 14 523 296 45 23 chr9 45088618 45088870 -78987302 - L2a LINE L2 -165 3222 2964 1 929 360 304 134 0 chr9 45089252 45089423 -78986749 - MLT1D LTR MaLR -4 501 308 1 929 277 283 11 8 chr9 45089563 45089844 -78986328 + (TG)n Simple_repeat Simple_repeat 1 282 0 1 929 327 196 0 0 chr9 45090142 45090198 -78985974 + RMER30 DNA MER1_type 18 73 -129 1 929 528 236 159 20 chr9 45091221 45091372 -78984800 - B4A SINE B4 -10 282 111 1 929 531 229 12 8 chr9 45091468 45091710 -78984462 + CT-rich Low_complexity Low_complexity 1 242 0 1 929 343 247 0 110 chr9 45092293 45092384 -78983788 - B4A SINE B4 -173 119 39 1 929 288 0 0 0 chr9 45092565 45092597 -78983575 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 929 787 223 51 66 chr9 45092860 45093057 -78983115 + B3A SINE B2 5 198 0 1 929 1013 306 71 42 chr9 45093086 45093333 -78982839 + L1MC3 LINE L1 7049 7296 -489 1 929 1373 164 177 61 chr9 45093333 45093677 -78982495 + ORR1C2 LTR MaLR 1 384 0 1 929 1013 306 71 42 chr9 45093677 45094088 -78982084 + L1MC3 LINE L1 7297 7726 -59 1 929 407 262 73 125 chr9 45094129 45094321 -78981851 - B4A SINE B4 -6 286 105 1 929 306 273 71 32 chr9 45094407 45094562 -78981610 - L1M5 LINE L1 -2982 3164 3004 1 929 609 182 116 43 chr9 45094811 45094949 -78981223 + B1_Mur1 SINE Alu 2 149 0 1 929 243 0 0 0 chr9 45095070 45095097 -78981075 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 929 536 164 46 23 chr9 45095175 45095350 -78980822 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 1 929 272 293 31 155 chr9 45095365 45095559 -78980613 - B3A SINE B2 -17 181 12 1 929 406 259 59 25 chr9 45095454 45095573 -78980599 - B4A SINE B4 -169 123 1 1 929 396 103 0 0 chr9 45095611 45095669 -78980503 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 929 648 327 61 36 chr9 45095693 45096387 -78979785 - L1M5 LINE L1 -2161 3985 3266 1 929 282 116 0 0 chr9 45096437 45096480 -78979692 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 929 504 0 0 0 chr9 45096480 45096536 -78979636 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 929 916 212 159 0 chr9 45096767 45096956 -78979216 - ID_B1 SINE B4 0 224 6 1 929 299 307 119 78 chr9 45096973 45097051 -78979121 - L1MEc LINE L1 -2977 3342 3259 1 929 327 49 0 0 chr9 45097051 45097092 -78979080 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 929 463 272 39 111 chr9 45097092 45097373 -78978799 - L1MEc LINE L1 -3061 3258 2968 1 929 1038 286 96 52 chr9 45097387 45097964 -78978208 + RMER13A LTR ERVK 2 638 -270 1 929 612 307 136 23 chr9 45098037 45098385 -78977787 - L1MEc LINE L1 -3510 2809 2426 1 929 920 142 7 26 chr9 45098385 45098537 -78977635 - B1_Mur3 SINE Alu 0 149 1 1 929 612 233 261 8 chr9 45098537 45098639 -78977533 - L1MEc LINE L1 -3973 2427 2296 1 929 697 246 163 37 chr9 45098749 45098939 -78977233 - ID_B1 SINE B4 0 224 11 1 929 264 324 155 45 chr9 45098998 45099379 -78976793 - L1MEc LINE L1 -4308 2092 1670 1 929 1392 65 5 26 chr9 45099404 45099595 -78976577 - B2_Mm2 SINE B2 -8 187 1 1 929 307 312 21 31 chr9 45099596 45099692 -78976480 - L1MEc LINE L1 -4806 1594 1500 1 929 387 60 0 0 chr9 45100107 45100157 -78976015 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 929 348 260 12 38 chr9 45100171 45100251 -78975921 - PB1D7 SINE Alu -19 101 24 1 929 232 170 57 0 chr9 45101132 45101185 -78974987 + (TATG)n Simple_repeat Simple_repeat 4 59 0 1 929 210 37 0 0 chr9 45101403 45101430 -78974742 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 929 1109 75 0 0 chr9 45101430 45101563 -78974609 - B1_Mus2 SINE Alu -11 136 4 1 929 561 293 11 40 chr9 45101995 45102169 -78974003 - ID_B1 SINE B4 0 224 56 1 929 283 314 79 34 chr9 45102838 45103016 -78973156 - MIR SINE MIR 0 262 77 1 929 356 322 84 8 chr9 45103253 45103372 -78972800 + MER33 DNA MER1_type 5 132 -192 1 929 917 260 95 12 chr9 45103380 45103633 -78972539 + B4A SINE B4 1 274 -18 1 929 306 125 0 0 chr9 45103635 45103683 -78972489 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 929 221 154 0 0 chr9 45103684 45103723 -78972449 + GA-rich Low_complexity Low_complexity 2 40 0 1 929 348 293 51 108 chr9 45103728 45103942 -78972230 + MER33 DNA MER1_type 123 324 0 1 929 462 347 26 62 chr9 45104252 45104572 -78971600 + ORR1E LTR MaLR 18 315 -55 1 929 326 263 492 0 chr9 45105240 45105384 -78970788 + B3 SINE B2 2 216 0 1 929 285 302 69 31 chr9 45105977 45106107 -78970065 - MER20 DNA MER1_type -13 206 72 1 929 180 309 70 42 chr9 45106834 45106905 -78969267 + MIRc SINE MIR 90 162 -106 1 929 1050 195 80 0 chr9 45107825 45108025 -78968147 - B3 SINE B2 0 216 1 1 929 228 290 28 78 chr9 45109240 45109382 -78966790 + BGLII LTR ERVK 182 316 -105 1 929 997 210 189 34 chr9 45109681 45110036 -78966136 - RMER17C LTR ERVK 0 410 1 1 929 813 76 0 0 chr9 45110287 45110392 -78965780 + B1_Mm SINE Alu 42 146 -1 1 929 436 56 0 27 chr9 45110394 45110468 -78965704 + (CAAAAA)n Simple_repeat Simple_repeat 2 73 0 1 929 266 193 123 0 chr9 45110531 45110588 -78965584 + ID_B1 SINE B4 153 216 -8 1 929 662 221 58 14 chr9 45111052 45111190 -78964982 - B1F1 SINE Alu -4 145 2 1 929 348 260 45 232 chr9 45111592 45111812 -78964360 + B3A SINE B2 5 183 -15 1 929 600 84 0 0 chr9 45111817 45111900 -78964272 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 929 514 266 130 113 chr9 45112374 45112658 -78963514 + MTE2b LTR MaLR 1 289 -90 1 929 808 227 0 18 chr9 45113306 45113472 -78962700 + RSINE1 SINE B4 3 165 0 1 929 635 321 110 16 chr9 45113499 45114044 -78962128 + L1ME1 LINE L1 5574 6169 -10 1 929 438 36 0 0 chr9 45114371 45114427 -78961745 + (TATG)n Simple_repeat Simple_repeat 4 59 0 1 929 181 189 76 63 chr9 45114635 45114714 -78961458 + L2a LINE L2 3334 3413 -13 2 929 351 340 15 50 chr9 45115084 45115282 -78960890 + L1MB8 LINE L1 5588 5778 -406 2 929 805 313 14 36 chr9 45115321 45115596 -78960576 + B4A SINE B4 6 274 -18 2 929 291 28 0 0 chr9 45115616 45115652 -78960520 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 929 590 276 60 75 chr9 45115678 45115960 -78960212 + L1MB8 LINE L1 5897 6174 -4 2 929 446 283 0 9 chr9 45116023 45116137 -78960035 - PB1D7 SINE Alu 0 120 8 2 929 459 0 0 0 chr9 45116214 45116265 -78959907 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 929 240 358 0 31 chr9 45116589 45116687 -78959485 - MIRb SINE MIR -132 136 42 2 929 196 277 0 0 chr9 45116897 45116944 -78959228 + L2a LINE L2 3378 3424 -2 2 929 316 303 99 18 chr9 45117244 45117355 -78958817 + ID_B1 SINE B4 80 199 -25 2 929 393 195 115 0 chr9 45117271 45117358 -78958814 + PB1D10 SINE Alu 28 124 -25 2 929 235 306 69 0 chr9 45117595 45117667 -78958505 + PB1D10 SINE Alu 37 113 -4 2 929 223 346 18 39 chr9 45117680 45117822 -78958350 + MIRc SINE MIR 43 187 -81 2 929 916 156 21 0 chr9 45117827 45117968 -78958204 + B1_Mur4 SINE Alu 5 148 -2 2 929 740 243 7 7 chr9 45118216 45118357 -78957815 + RSINE1 SINE B4 6 146 -19 2 929 235 286 28 14 chr9 45119138 45119209 -78956963 + MIRc SINE MIR 159 230 -38 2 929 21 0 0 0 chr9 45119630 45119651 -78956521 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 351 0 0 0 chr9 45120403 45120442 -78955730 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 929 900 250 110 4 chr9 45120468 45120713 -78955459 - B4A SINE B4 -19 273 3 2 929 423 0 0 0 chr9 45120856 45120903 -78955269 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 929 639 104 0 0 chr9 45120993 45121108 -78955064 + (TG)n Simple_repeat Simple_repeat 1 115 0 2 929 432 306 96 69 chr9 45121118 45121378 -78954794 - MIRb SINE MIR -1 267 1 2 929 236 150 0 24 chr9 45121934 45121975 -78954197 + ORR1A1-int LTR MaLR 1303 1342 -450 2 929 322 346 27 22 chr9 45122066 45122249 -78953923 + L3 LINE CR1 4057 4240 -249 2 929 260 287 81 19 chr9 45123098 45123258 -78952914 + L1ME1 LINE L1 5926 6095 -84 2 929 248 77 0 25 chr9 45123258 45123298 -78952874 + (TTTTC)n Simple_repeat Simple_repeat 4 42 0 2 929 286 302 31 62 chr9 45123339 45123503 -78952669 - B1F2 SINE Alu 0 149 1 2 929 764 284 78 0 chr9 45123550 45123754 -78952418 + ID_B1 SINE B4 5 224 0 2 929 930 147 0 0 chr9 45123754 45123911 -78952261 + (GGA)n Simple_repeat Simple_repeat 3 159 0 2 929 314 282 77 109 chr9 45124149 45124396 -78951776 - MER96B DNA hAT -165 252 14 2 929 205 184 0 0 chr9 45124516 45124554 -78951618 + (CGAGA)n Simple_repeat Simple_repeat 4 41 0 2 929 248 359 152 14 chr9 45127740 45127963 -78948209 - L3b LINE CR1 -200 282 29 2 929 891 151 7 20 chr9 45128659 45128808 -78947364 - B1_Mus2 SINE Alu 0 147 1 2 929 728 204 91 0 chr9 45128844 45128976 -78947196 + B1_Mur2 SINE Alu 1 144 -5 2 929 230 231 19 0 chr9 45128976 45129022 -78947150 + polypurine Low_complexity Low_complexity 6 52 0 2 929 300 232 38 66 chr9 45129248 45129354 -78946818 + PB1D10 SINE Alu 13 115 -2 2 929 222 196 21 21 chr9 45129401 45129448 -78946724 + MIRm SINE MIR 106 152 -124 2 929 237 323 15 0 chr9 45129588 45129653 -78946519 + MIR3 SINE MIR 119 184 -24 2 929 203 0 37 0 chr9 45130577 45130604 -78945568 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 929 541 288 116 64 chr9 45130608 45130875 -78945297 - B4 SINE B4 -11 281 1 2 929 241 325 85 31 chr9 45131021 45131151 -78945021 - Charlie15a DNA MER1_type 0 224 88 2 929 461 238 122 19 chr9 45131658 45131765 -78944407 + PB1D10 SINE Alu 2 119 -1 2 929 333 0 0 0 chr9 45132506 45132543 -78943629 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 929 468 0 0 0 chr9 45132543 45132594 -78943578 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 929 475 288 113 52 chr9 45132615 45132809 -78943363 - B4A SINE B4 -7 285 80 2 929 184 263 50 78 chr9 45133139 45133250 -78942922 + MIRm SINE MIR 25 143 -133 2 929 478 233 0 0 chr9 45133948 45134038 -78942134 + ID_B1 SINE B4 132 221 -3 2 929 452 318 30 15 chr9 45134308 45134439 -78941733 - RSINE1 SINE B4 -30 135 3 2 929 200 312 205 0 chr9 45134748 45134860 -78941312 - MIRb SINE MIR -6 262 128 2 929 190 297 187 0 chr9 45135665 45135756 -78940416 - MIRc SINE MIR -121 147 40 2 929 487 363 74 14 chr9 45137559 45137774 -78938398 + MIRb SINE MIR 3 230 -38 2 929 24 0 0 0 chr9 45139004 45139028 -78937144 + GC_rich Low_complexity Low_complexity 1 24 0 2 929 193 315 87 0 chr9 45139088 45139180 -78936992 + MIRb SINE MIR 36 135 -133 2 929 486 0 0 0 chr9 45140056 45140110 -78936062 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 929 351 0 0 0 chr9 45140110 45140148 -78936024 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 929 548 187 0 8 chr9 45140700 45140824 -78935348 + (TG)n Simple_repeat Simple_repeat 2 124 0 2 929 187 351 30 98 chr9 45140869 45141033 -78935139 + MIR3 SINE MIR 8 160 -48 2 929 208 154 19 19 chr9 45141820 45141873 -78934299 + GA-rich Low_complexity Low_complexity 2 54 0 2 929 760 270 111 41 chr9 45142342 45142612 -78933560 - B4 SINE B4 -2 290 2 2 929 206 62 0 30 chr9 45142820 45142853 -78933319 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 2 929 187 263 297 20 chr9 45143180 45143281 -78932891 - MER5A DNA MER1_type -18 171 43 2 929 207 337 79 0 chr9 45143219 45143308 -78932864 + MER5A DNA MER1_type 92 187 -2 2 929 1561 204 122 26 chr9 45143421 45143798 -78932374 - MTD LTR MaLR 0 419 7 2 929 411 233 108 0 chr9 45143823 45143952 -78932220 - MER5A DNA MER1_type -5 184 42 2 929 1286 78 0 6 chr9 45145931 45146112 -78930060 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 929 672 264 122 20 chr9 45147636 45147883 -78928289 + B4A SINE B4 5 276 -16 2 929 429 20 0 0 chr9 45147944 45147994 -78928178 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 929 1011 296 46 9 chr9 45148197 45148524 -78927648 - ORR1E LTR MaLR -18 341 3 2 929 249 119 0 0 chr9 45148874 45148916 -78927256 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2 929 623 266 36 26 chr9 45149108 45149301 -78926871 + B3A SINE B2 1 195 -3 2 929 182 0 107 0 chr9 45150026 45150054 -78926118 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 929 808 271 87 74 chr9 45150236 45150665 -78925507 - MTE2a LTR MaLR 0 419 2 2 929 489 97 0 0 chr9 45151383 45151455 -78924717 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 929 525 220 0 42 chr9 45151629 45151724 -78924448 + B3 SINE B2 1 91 -125 2 929 278 265 176 0 chr9 45151733 45151835 -78924337 - MER90 LTR ERV1 -258 317 198 2 929 546 254 43 7 chr9 45151900 45152039 -78924133 - B1F1 SINE Alu -3 146 3 2 929 1481 249 42 11 chr9 45152417 45152775 -78923397 - MTE2b LTR MaLR -6 373 5 2 929 492 62 24 12 chr9 45154232 45154314 -78921858 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 929 26 0 0 0 chr9 45154783 45154809 -78921363 + AT_rich Low_complexity Low_complexity 1 26 0 2 929 234 0 0 0 chr9 45154861 45154887 -78921285 + (T)n Simple_repeat Simple_repeat 1 26 0 2 929 736 137 89 0 chr9 45156217 45156341 -78919831 - B1_Mus1 SINE Alu -6 142 8 2 929 225 0 0 0 chr9 45156587 45156612 -78919560 + (T)n Simple_repeat Simple_repeat 1 25 0 2 929 678 116 64 32 chr9 45157185 45157310 -78918862 + B1_Mus1 SINE Alu 2 130 -18 2 929 266 289 152 21 chr9 45157531 45157676 -78918496 - MIRb SINE MIR -34 234 71 2 929 294 294 181 20 chr9 45158374 45158523 -78917649 + MIR SINE MIR 34 206 -56 2 929 307 282 120 24 chr9 45158892 45159059 -78917113 + L2 LINE L2 2000 2182 -1237 2 929 440 301 40 176 chr9 45159143 45159418 -78916754 - ORR1E LTR MaLR -11 359 95 2 929 1669 171 111 3 chr9 45159418 45159759 -78916413 - ORR1C1 LTR MaLR 0 378 1 2 929 440 270 28 197 chr9 45159759 45159867 -78916305 - ORR1E LTR MaLR -255 104 15 2 929 784 223 60 37 chr9 45160317 45160597 -78915575 - L1MD LINE L1 -551 5691 5287 2 929 586 206 504 0 chr9 45160597 45160849 -78915323 + MTEb LTR MaLR 1 379 0 2 929 784 286 75 93 chr9 45160849 45161291 -78914881 - L1MD LINE L1 -860 5286 4797 2 929 261 0 0 0 chr9 45161291 45161320 -78914852 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 929 784 286 75 93 chr9 45161320 45161778 -78914394 - L1MD LINE L1 -1350 4796 4410 2 929 23 54 0 0 chr9 45161785 45161822 -78914350 + AT_rich Low_complexity Low_complexity 1 37 0 2 929 371 283 38 44 chr9 45161849 45161883 -78914289 - Charlie1a DNA MER1_type -257 1198 1170 2 929 661 259 62 46 chr9 45161883 45162077 -78914095 - B3A SINE B2 -1 197 1 2 929 371 283 38 44 chr9 45162077 45162201 -78913971 - Charlie1a DNA MER1_type -286 1169 1041 2 929 2320 132 31 11 chr9 45162248 45162608 -78913564 + ORR1B2 LTR MaLR 1 367 0 2 929 2649 297 55 35 chr9 45162624 45163529 -78912643 - Charlie1a DNA MER1_type -507 948 26 2 929 1222 54 0 20 chr9 45163688 45163838 -78912334 + B1_Mus1 SINE Alu 2 148 0 2 929 929 270 40 108 chr9 45164153 45164477 -78911695 + MTE2b LTR MaLR 1 302 -77 2 929 1872 114 116 3 chr9 45164480 45164798 -78911374 - ORR1B1 LTR MaLR -3 391 38 2 929 1093 262 72 80 chr9 45164906 45164955 -78911217 + MTEb LTR MaLR 5 51 -328 2 929 477 198 128 10 chr9 45164955 45165057 -78911115 + PB1D9 SINE Alu 2 115 -5 2 929 1093 262 72 80 chr9 45165057 45165380 -78910792 + MTEb LTR MaLR 52 374 -5 2 929 396 0 0 0 chr9 45165511 45165555 -78910617 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 929 210 37 0 0 chr9 45165708 45165735 -78910437 + (T)n Simple_repeat Simple_repeat 1 27 0 2 929 1187 75 0 0 chr9 45165738 45165885 -78910287 - B1_Mus1 SINE Alu 0 148 2 3 929 313 207 0 44 chr9 45166216 45166307 -78909865 + Lx7 LINE L1 7610 7696 0 3 929 368 401 12 6 chr9 45167506 45167674 -78908498 + MIR SINE MIR 47 215 -47 3 929 1155 255 10 54 chr9 45168117 45168411 -78907761 + B4 SINE B4 11 291 -1 3 929 302 342 45 70 chr9 45168503 45168704 -78907468 - MIRb SINE MIR -1 267 72 3 929 474 252 126 32 chr9 45168716 45168917 -78907255 + B4A SINE B4 2 229 -63 3 929 188 320 12 93 chr9 45169948 45170034 -78906138 - MER5A DNA MER1_type -34 155 77 3 929 370 284 118 0 chr9 45170386 45170488 -78905684 + B4 SINE B4 88 201 -91 3 929 315 308 42 97 chr9 45170488 45170530 -78905642 + B1_Mm SINE Alu 3 138 -9 3 929 233 255 0 0 chr9 45170534 45170585 -78905587 + G-rich Low_complexity Low_complexity 1 51 0 3 929 369 145 0 0 chr9 45170588 45170650 -78905522 + (GGA)n Simple_repeat Simple_repeat 2 63 0 3 929 369 0 0 0 chr9 45170732 45170773 -78905399 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 929 186 43 0 0 chr9 45172319 45172342 -78903830 + (C)n Simple_repeat Simple_repeat 1 23 0 3 929 1216 15 0 0 chr9 45172342 45172476 -78903696 - B1_Mm SINE Alu -13 134 1 3 929 1312 20 0 0 chr9 45172638 45172785 -78903387 + B1_Mm SINE Alu 1 147 0 3 929 207 161 0 0 chr9 45172785 45172841 -78903331 + A-rich Low_complexity Low_complexity 1 56 0 3 929 216 0 0 0 chr9 45172842 45172866 -78903306 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 929 1929 126 14 86 chr9 45173012 45173454 -78902718 + RMER17C LTR ERVK 1 410 0 3 929 1320 253 87 9 chr9 45173972 45174319 -78901853 + MTEb LTR MaLR 1 374 -5 3 929 251 160 40 13 chr9 45174453 45174529 -78901643 + G-rich Low_complexity Low_complexity 4 81 0 3 929 293 339 67 49 chr9 45174619 45174818 -78901354 + ORR1E LTR MaLR 3 187 -183 3 929 734 162 0 0 chr9 45177272 45177389 -78898783 - B1_Mus1 SINE Alu -12 136 20 3 929 339 85 0 0 chr9 45177393 45177440 -78898732 + (TCC)n Simple_repeat Simple_repeat 3 49 0 3 929 220 254 21 42 chr9 45179871 45180015 -78896157 + (CACAC)n Simple_repeat Simple_repeat 2 142 0 3 929 334 200 0 39 chr9 45180211 45180289 -78895883 + HAL1-3A_ME LINE L1 1975 2049 -809 3 929 308 299 40 36 chr9 45180504 45180757 -78895415 - RMER17D LTR ERVK -350 539 286 3 929 205 293 171 0 chr9 45180982 45181064 -78895108 - L2b LINE L2 -1 3374 3279 3 929 1177 54 0 26 chr9 45182412 45182563 -78893609 - B1_Mus2 SINE Alu 0 147 1 3 929 279 0 0 0 chr9 45183663 45183694 -78892478 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 929 1024 249 81 72 chr9 45185298 45185753 -78890419 - L1MC3 LINE L1 -8 7777 7319 3 929 294 29 0 0 chr9 45185753 45185788 -78890384 + (CATGT)n Simple_repeat Simple_repeat 3 37 0 3 929 645 241 15 0 chr9 45187537 45187674 -78888498 - ID_B1 SINE B4 -4 220 82 3 929 594 109 0 0 chr9 45187831 45187932 -78888240 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 929 522 202 0 27 chr9 45191557 45191669 -78884503 - PB1D7 SINE Alu 0 120 12 3 929 224 364 0 10 chr9 45191595 45191695 -78884477 - B4A SINE B4 -123 169 71 3 929 435 38 0 0 chr9 45192349 45192402 -78883770 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 929 314 273 53 99 chr9 45192448 45192619 -78883553 + RLTR25B LTR ERVK 336 498 -530 3 929 872 127 7 27 chr9 45192525 45192671 -78883501 + B1_Mus1 SINE Alu 6 148 0 3 929 311 342 76 43 chr9 45192681 45193078 -78883094 + L1ME3B LINE L1 763 1172 -4964 3 929 299 267 186 22 chr9 45193279 45193505 -78882667 + L1ME3B LINE L1 4137 4399 -1747 3 929 447 278 42 48 chr9 45193838 45194027 -78882145 - Tigger7 DNA MER2_type -16 2475 2288 3 929 1069 103 7 0 chr9 45194043 45194189 -78881983 - B1_Mus1 SINE Alu 0 148 2 3 929 186 43 0 0 chr9 45194203 45194226 -78881946 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 929 810 54 0 0 chr9 45194226 45194330 -78881842 - B1_Mus2 SINE Alu -8 139 36 3 929 262 312 23 75 chr9 45194239 45194275 -78881897 - RLTR25B LTR ERVK -507 521 468 3 929 313 145 0 61 chr9 45194275 45194341 -78881831 - 4.5SRNA scRNA scRNA -8 86 25 3 929 262 312 23 75 chr9 45194341 45194412 -78881760 - RLTR25B LTR ERVK -507 467 358 3 929 872 277 51 33 chr9 45194441 45194717 -78881455 - Tigger7 DNA MER2_type -2186 305 25 3 929 1477 74 21 0 chr9 45194722 45194912 -78881260 + B2_Mm2 SINE B2 1 194 -1 3 929 283 237 124 24 chr9 45195048 45195148 -78881024 + L1ME3B LINE L1 4906 5013 -1130 3 929 306 326 44 36 chr9 45195371 45195508 -78880664 + RSINE1 SINE B4 1 138 -27 3 929 210 71 0 0 chr9 45195510 45195538 -78880634 + (CG)n Simple_repeat Simple_repeat 2 29 0 3 929 270 0 0 0 chr9 45195538 45195567 -78880605 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 929 248 345 99 6 chr9 45196181 45196396 -78879776 + L1ME3B LINE L1 5693 5923 -317 3 929 692 251 159 25 chr9 45196407 45196550 -78879622 + B4A SINE B4 1 155 -137 3 929 183 129 0 0 chr9 45196550 45196581 -78879591 + (CAGC)n Simple_repeat Simple_repeat 3 33 0 3 929 692 251 159 25 chr9 45196581 45196682 -78879490 + B4A SINE B4 156 278 -14 3 929 951 195 5 35 chr9 45197374 45197576 -78878596 + B3A SINE B2 1 196 -2 3 929 246 307 22 11 chr9 45199001 45199090 -78877082 + L2b LINE L2 3266 3355 -20 3 929 446 286 93 86 chr9 45199276 45199544 -78876628 - ORR1E LTR MaLR -65 294 25 3 929 822 110 24 43 chr9 45201079 45201623 -78874549 + (CA)n Simple_repeat Simple_repeat 1 533 0 3 929 1885 185 56 10 chr9 45201905 45202299 -78873873 - MTC LTR MaLR -9 412 1 3 929 645 237 14 0 chr9 45202507 45202646 -78873526 + ID_B1 SINE B4 81 221 -3 3 929 306 0 0 0 chr9 45202863 45202897 -78873275 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 929 631 222 83 110 chr9 45205761 45205989 -78870183 - ID_B1 SINE B4 -2 222 1 3 929 211 258 15 0 chr9 45209172 45209238 -78866934 + (TGGG)n Simple_repeat Simple_repeat 3 69 0 3 929 204 329 14 14 chr9 45209507 45209581 -78866591 - L2 LINE L2 -372 3047 2974 3 929 247 308 64 0 chr9 45209646 45209724 -78866448 + RSINE1 SINE B4 3 85 -80 3 929 213 317 24 12 chr9 45211596 45211679 -78864493 + MIR SINE MIR 40 123 -139 3 929 254 246 29 0 chr9 45211792 45211825 -78864347 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 3 929 186 103 0 0 chr9 45211825 45211854 -78864318 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 3 929 254 246 29 0 chr9 45211854 45211889 -78864283 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 3 929 207 242 32 0 chr9 45212691 45212753 -78863419 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 3 929 367 167 22 0 chr9 45212756 45212846 -78863326 + (TATG)n Simple_repeat Simple_repeat 1 92 0 3 929 579 62 42 0 chr9 45212851 45212947 -78863225 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 3 929 426 155 0 0 chr9 45212985 45213082 -78863090 + (TATG)n Simple_repeat Simple_repeat 2 98 0 3 929 209 261 120 0 chr9 45213332 45213406 -78862766 + MIR SINE MIR 73 160 -116 3 929 470 70 14 0 chr9 45214426 45214497 -78861675 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 929 491 230 35 0 chr9 45214506 45214619 -78861553 - B1F SINE Alu -1 148 32 3 929 498 243 14 29 chr9 45215447 45215587 -78860585 + MIR SINE MIR 23 160 -102 3 929 181 304 18 0 chr9 45216918 45216974 -78859198 + MIRb SINE MIR 122 178 -90 3 929 342 0 0 0 chr9 45217256 45217294 -78858878 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 929 203 0 0 36 chr9 45218485 45218513 -78857659 + (CTG)n Simple_repeat Simple_repeat 1 27 0 3 930 204 40 0 0 chr9 45220940 45220965 -78855207 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 930 2332 144 48 23 chr9 45222206 45222603 -78853569 + MTB_Mm LTR MaLR 1 407 0 3 930 1981 116 16 158 chr9 45222941 45223321 -78852851 - ORR1A3 LTR MaLR 0 326 1 3 930 1378 165 148 12 chr9 45223616 45223949 -78852223 + MTD LTR MaLR 3 406 -13 3 930 256 155 73 0 chr9 45224580 45224659 -78851513 + MIR SINE MIR 113 212 -56 3 930 228 88 0 109 chr9 45224737 45224801 -78851371 + B2_Mm2 SINE B2 130 186 -9 3 930 213 224 0 0 chr9 45224934 45224992 -78851180 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 930 287 322 35 8 chr9 45225196 45225347 -78850825 + MIRb SINE MIR 8 161 -101 3 930 520 236 9 0 chr9 45227050 45227160 -78849012 + ID_B1 SINE B4 95 205 -19 3 930 1077 189 52 5 chr9 45227179 45227371 -78848801 + B3 SINE B2 2 202 -14 3 930 555 16 0 0 chr9 45227371 45227435 -78848737 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 930 399 228 13 0 chr9 45227690 45227769 -78848403 + ID4_ SINE ID 3 82 -1 3 930 301 282 24 0 chr9 45228231 45228316 -78847856 - B3 SINE B2 -125 91 5 3 930 246 256 79 79 chr9 45228510 45228599 -78847573 + PB1D7 SINE Alu 10 98 -22 3 930 270 353 56 31 chr9 45228617 45228813 -78847359 + L3 LINE CR1 4047 4247 -242 3 930 843 262 34 10 chr9 45229368 45229572 -78846600 + B3 SINE B2 1 209 -7 3 930 996 223 168 12 chr9 45229638 45229888 -78846284 + B4A SINE B4 1 289 -3 3 930 450 53 0 0 chr9 45229889 45229946 -78846226 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 930 207 0 0 0 chr9 45230123 45230146 -78846026 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 930 299 249 0 0 chr9 45230226 45230290 -78845882 + PB1D10 SINE Alu 52 126 -1 3 930 978 145 7 0 chr9 45230672 45230810 -78845362 - B1_Mur3 SINE Alu -9 140 2 3 930 575 201 143 20 chr9 45231426 45231629 -78844543 - Lx9 LINE L1 0 7644 7417 3 930 1917 222 47 28 chr9 45231655 45232193 -78843979 - Lx9 LINE L1 -127 7517 6970 3 930 629 114 28 37 chr9 45232230 45232339 -78843833 - B1_Mur2 SINE Alu 0 149 42 4 930 263 287 10 94 chr9 45233024 45233120 -78843052 + RSINE1 SINE B4 43 130 -35 4 930 207 0 0 0 chr9 45233272 45233295 -78842877 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 930 186 267 53 13 chr9 45233341 45233417 -78842755 - MIR3 SINE MIR -45 163 85 4 930 222 37 0 0 chr9 45233425 45233452 -78842720 + (CTG)n Simple_repeat Simple_repeat 3 29 0 4 930 197 159 0 22 chr9 45234467 45234512 -78841660 + CT-rich Low_complexity Low_complexity 4 47 0 4 930 243 321 98 21 chr9 45234687 45234881 -78841291 - MIRb SINE MIR -34 234 26 4 930 1380 272 27 7 chr9 45235777 45236188 -78839984 + L1MB3 LINE L1 5578 5996 -187 4 930 298 232 29 0 chr9 45237004 45237073 -78839099 + B4A SINE B4 2 72 -220 4 930 432 186 9 81 chr9 45237067 45237178 -78838994 + B4A SINE B4 188 290 -2 4 930 424 0 36 0 chr9 45240175 45240231 -78835941 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 930 207 0 0 0 chr9 45241192 45241215 -78834957 + (T)n Simple_repeat Simple_repeat 1 23 0 4 930 210 171 0 0 chr9 45243353 45243394 -78832778 + (CGTG)n Simple_repeat Simple_repeat 3 43 0 4 930 269 309 89 18 chr9 45243438 45243550 -78832622 + MIRc SINE MIR 34 153 -115 4 930 348 250 109 27 chr9 45245786 45245956 -78830216 + MIR3 SINE MIR 20 208 0 4 930 203 261 43 0 chr9 45246217 45246286 -78829886 + CT-rich Low_complexity Low_complexity 2 73 0 4 930 527 79 0 22 chr9 45246315 45246406 -78829766 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 4 930 234 0 0 0 chr9 45247022 45247048 -78829124 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 930 1537 217 110 3 chr9 45247107 45247463 -78828709 + MTD LTR MaLR 12 405 -14 4 930 245 217 0 0 chr9 45248191 45248237 -78827935 - MER5A1 DNA MER1_type -86 80 35 4 930 336 294 108 24 chr9 45248401 45248568 -78827604 - MIR SINE MIR -69 193 13 4 930 319 281 128 14 chr9 45249745 45249886 -78826286 - HAL1-3A_ME LINE L1 -418 2440 2284 4 930 469 200 8 16 chr9 45249889 45250016 -78826156 + CT-rich Low_complexity Low_complexity 3 128 0 4 930 309 26 0 0 chr9 45250028 45250066 -78826106 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 4 930 255 275 0 59 chr9 45251131 45251216 -78824956 - MIR3 SINE MIR -46 162 83 4 930 226 374 65 0 chr9 45252230 45252337 -78823835 + MIRb SINE MIR 48 161 -107 4 930 370 157 12 12 chr9 45252821 45252905 -78823267 + GA-rich Low_complexity Low_complexity 5 88 0 4 930 1239 72 0 0 chr9 45252909 45253076 -78823096 + (GGAGA)n Simple_repeat Simple_repeat 1 167 0 4 930 322 276 69 44 chr9 45253192 45253351 -78822821 + MIR SINE MIR 43 205 -57 4 930 191 256 0 0 chr9 45253351 45253394 -78822778 + L2b LINE L2 3329 3371 -4 4 930 1534 179 152 8 chr9 45254637 45254991 -78821181 + MTD LTR MaLR 15 419 0 4 930 855 244 48 19 chr9 45255012 45255221 -78820951 + B3 SINE B2 2 216 0 4 930 441 115 35 0 chr9 45255239 45255326 -78820846 + (GA)n Simple_repeat Simple_repeat 2 91 0 4 930 391 332 132 10 chr9 45256387 45256691 -78819481 - L1ME3A LINE L1 -38 6135 5795 4 930 226 229 0 20 chr9 45257771 45257820 -78818352 + CT-rich Low_complexity Low_complexity 1 48 0 4 930 1510 147 0 4 chr9 45259527 45259752 -78816420 + URR1B DNA MER1_type 2 225 0 4 930 405 304 59 44 chr9 45260498 45260728 -78815444 - MIRb SINE MIR 0 268 32 4 930 403 33 33 0 chr9 45260739 45260800 -78815372 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 930 311 288 108 17 chr9 45260911 45261031 -78815141 + MIR SINE MIR 14 144 -118 4 930 224 0 65 0 chr9 45261240 45261271 -78814901 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 930 703 83 59 6 chr9 45262525 45262695 -78813477 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 930 483 95 28 28 chr9 45262710 45262818 -78813354 + (TG)n Simple_repeat Simple_repeat 2 109 0 4 930 338 318 35 42 chr9 45263624 45263784 -78812388 - MIRb SINE MIR -45 223 61 4 930 629 157 7 0 chr9 45263785 45263938 -78812234 + GA-rich Low_complexity Low_complexity 1 154 0 4 930 183 400 128 12 chr9 45265479 45265651 -78810521 - MIRb SINE MIR -54 214 23 4 930 229 205 119 71 chr9 45265880 45265964 -78810208 + PB1D10 SINE Alu 28 115 -2 4 930 271 371 19 0 chr9 45267616 45267721 -78808451 + MIRb SINE MIR 17 123 -145 4 930 419 296 58 70 chr9 45268338 45268602 -78807570 - MTEa LTR MaLR -4 375 115 4 930 391 242 55 0 chr9 45268616 45268707 -78807465 - MTEa LTR MaLR -224 135 40 4 930 180 143 0 87 chr9 45270093 45270139 -78806033 + MER5B DNA MER1_type 13 54 -124 4 930 207 268 0 0 chr9 45270150 45270191 -78805981 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 930 545 105 62 10 chr9 45270191 45270287 -78805885 + HAL1-2a_MD LINE L1 2347 2447 -577 4 930 637 221 194 88 chr9 45270789 45271062 -78805110 - RMER15 LTR ERVL 0 575 274 4 930 277 127 31 31 chr9 45271379 45271444 -78804728 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 4 930 329 374 71 56 chr9 45272712 45273108 -78803064 + L1ME3B LINE L1 5655 6056 -184 4 930 225 0 0 0 chr9 45273168 45273193 -78802979 + (A)n Simple_repeat Simple_repeat 1 25 0 4 930 189 0 0 0 chr9 45273214 45273235 -78802937 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 4 930 468 282 18 0 chr9 45274243 45274353 -78801819 + PB1D10 SINE Alu 5 116 -1 4 930 204 245 0 0 chr9 45274492 45274545 -78801627 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 930 280 387 32 0 chr9 45275106 45275230 -78800942 - LTR85a LTR Gypsy? 0 702 575 4 930 181 321 117 45 chr9 45277182 45277293 -78798879 + MIRb SINE MIR 56 174 -94 4 930 262 311 67 19 chr9 45277309 45277414 -78798758 - MIRm SINE MIR -125 151 42 4 930 278 315 98 67 chr9 45277500 45277694 -78798478 - MIRb SINE MIR -43 225 26 4 930 193 200 150 0 chr9 45279647 45279687 -78796485 + L2a LINE L2 3288 3333 -93 4 930 513 0 0 0 chr9 45281058 45281115 -78795057 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 930 186 327 63 86 chr9 45281898 45282072 -78794100 + L3 LINE CR1 4235 4404 -85 4 930 239 286 51 13 chr9 45282073 45282151 -78794021 - MIRb SINE MIR -82 186 106 4 930 2626 68 3 12 chr9 45282173 45282503 -78793669 + ORR1A2 LTR MaLR 1 327 0 4 930 877 159 14 7 chr9 45282584 45282882 -78793290 + C-rich Low_complexity Low_complexity 1 299 0 4 930 197 401 61 41 chr9 45283556 45283850 -78792322 - L2b LINE L2 -54 3321 3022 4 930 267 299 178 0 chr9 45285251 45285388 -78790784 + MIR SINE MIR 20 174 -88 4 930 554 81 0 75 chr9 45285389 45285482 -78790690 + B1_Mur4 SINE Alu 65 150 0 4 930 220 401 14 21 chr9 45286360 45286500 -78789672 + L2b LINE L2 3236 3374 -1 4 930 218 241 11 0 chr9 45286506 45286593 -78789579 + (TGGA)n Simple_repeat Simple_repeat 3 90 0 4 930 299 253 13 0 chr9 45286705 45286784 -78789388 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 4 930 3544 18 5 0 chr9 45287405 45287799 -78788373 - MTA_Mm LTR MaLR 0 396 1 4 930 200 176 0 0 chr9 45288149 45288183 -78787989 + (CGTG)n Simple_repeat Simple_repeat 1 34 0 4 930 281 26 26 0 chr9 45288315 45288353 -78787819 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 930 254 310 42 21 chr9 45288428 45288537 -78787635 - B1F2 SINE Alu -8 112 2 4 930 189 262 48 16 chr9 45288566 45288628 -78787544 + MIRc SINE MIR 118 181 -87 4 930 945 259 217 3 chr9 45289903 45290209 -78785963 - ORR1E LTR MaLR -2 377 7 4 930 258 381 88 12 chr9 45290248 45290418 -78785754 + MIRb SINE MIR 26 208 -60 4 930 617 272 49 16 chr9 45291146 45291329 -78784843 - MER5A DNA MER1_type 0 189 1 4 930 636 214 0 0 chr9 45291969 45292147 -78784025 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 930 806 257 26 105 chr9 45292202 45292414 -78783758 - B4A SINE B4 -8 284 93 4 930 1106 184 20 15 chr9 45292414 45292618 -78783554 - B3 SINE B2 -10 206 2 4 930 806 257 26 105 chr9 45292618 45292709 -78783463 - B4A SINE B4 -200 92 5 4 930 23 33 0 0 chr9 45294563 45294593 -78781579 + AT_rich Low_complexity Low_complexity 1 30 0 4 930 396 321 171 42 chr9 45294914 45295177 -78780995 + MLT1F1 LTR MaLR 273 569 0 4 930 218 279 36 48 chr9 45295706 45295789 -78780383 + MIRc SINE MIR 62 143 -125 4 930 188 331 83 78 chr9 45296343 45296523 -78779649 - L2b LINE L2 -6 3369 3189 4 930 1965 170 107 13 chr9 45296554 45296936 -78779236 + MTD LTR MaLR 1 418 -1 4 930 899 231 100 63 chr9 45296939 45297414 -78778758 + MTD-int LTR MaLR 2 654 -604 4 930 183 80 0 0 chr9 45297441 45297466 -78778706 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 930 603 67 0 0 chr9 45297466 45297555 -78778617 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 4 930 215 220 0 20 chr9 45297555 45297606 -78778566 + B1_Mur2 SINE Alu 100 149 0 4 930 758 179 21 0 chr9 45297627 45297767 -78778405 + MTD LTR MaLR 277 419 0 4 930 315 0 0 0 chr9 45298183 45298218 -78777954 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 930 21 0 0 0 chr9 45298343 45298364 -78777808 + AT_rich Low_complexity Low_complexity 1 21 0 4 930 778 297 44 12 chr9 45299436 45299688 -78776484 - MLT1D LTR MaLR -45 460 201 4 930 234 143 0 0 chr9 45299711 45299760 -78776412 + (CGGGGG)n Simple_repeat Simple_repeat 5 53 0 4 930 509 314 43 30 chr9 45299877 45300041 -78776131 - MLT1D LTR MaLR -302 203 38 4 930 1197 254 144 72 chr9 45300063 45300678 -78775494 - L1M4 LINE L1 -697 5467 4796 4 930 921 179 14 0 chr9 45300678 45300823 -78775349 - B1_Mur1 SINE Alu -2 147 1 4 930 1197 270 132 70 chr9 45300823 45300939 -78775233 - L1M4 LINE L1 -1351 4795 4681 4 930 21 0 0 0 chr9 45301007 45301028 -78775144 + AT_rich Low_complexity Low_complexity 1 21 0 4 930 879 249 49 15 chr9 45301051 45301255 -78774917 - B3 SINE B2 -5 211 1 4 930 428 269 52 29 chr9 45301269 45301441 -78774731 - L1M4 LINE L1 -1494 4652 4477 4 930 215 170 0 21 chr9 45301452 45301500 -78774672 + CT-rich Low_complexity Low_complexity 3 49 0 5 930 1017 149 0 0 chr9 45301501 45301676 -78774496 + (TTC)n Simple_repeat Simple_repeat 2 176 0 5 930 534 165 115 69 chr9 45301682 45301812 -78774360 - B1_Mus1 SINE Alu -1 147 12 5 930 1437 268 52 8 chr9 45301812 45302128 -78774044 - L1M4 LINE L1 -1900 4246 3918 4 930 333 0 0 0 chr9 45302128 45302165 -78774007 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 930 1437 268 52 8 chr9 45302165 45302330 -78773842 - L1M4 LINE L1 -2229 3917 3744 4 930 545 261 50 0 chr9 45302776 45302895 -78773277 - B1_Mur1 SINE Alu -23 126 2 5 930 349 274 192 0 chr9 45303274 45303420 -78772752 - L1M4 LINE L1 -1592 4554 4381 5 930 287 270 48 102 chr9 45303425 45303468 -78772704 - B2_Mm2 SINE B2 0 195 1 5 930 778 259 6 6 chr9 45303468 45303631 -78772541 - RSINE1 SINE B4 0 165 3 5 930 242 203 102 0 chr9 45303631 45303688 -78772484 - 4.5SRNA scRNA scRNA -16 78 16 5 930 240 196 0 0 chr9 45303695 45303741 -78772431 - L1M4 LINE L1 -1772 4368 4323 5 930 385 327 34 32 chr9 45305309 45305501 -78770671 + MIR SINE MIR 43 240 -28 5 930 437 262 59 104 chr9 45305795 45305920 -78770252 + PB1D7 SINE Alu 2 121 -29 5 930 307 218 149 0 chr9 45306770 45306857 -78769315 - MIRb SINE MIR -72 196 97 5 930 319 222 0 77 chr9 45308642 45308720 -78767452 - PB1D7 SINE Alu -2 118 47 5 930 182 91 30 0 chr9 45309190 45309223 -78766949 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 930 210 222 22 0 chr9 45309267 45309312 -78766860 - B1_Mur4 SINE Alu -57 93 48 5 930 344 254 0 14 chr9 45309480 45309552 -78766620 + B3A SINE B2 1 71 -127 5 930 349 230 66 11 chr9 45310985 45311113 -78765059 + MIRc SINE MIR 11 158 -110 5 930 245 133 49 16 chr9 45311191 45311252 -78764920 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 930 967 257 40 22 chr9 45311406 45311626 -78764546 + B4A SINE B4 7 230 -62 5 930 818 235 109 0 chr9 45311626 45311809 -78764363 + B3 SINE B2 1 203 -13 5 930 285 29 0 0 chr9 45311884 45311918 -78764254 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 930 232 288 86 84 chr9 45311940 45312238 -78763934 - MLT1A1 LTR MaLR -43 316 7 5 930 301 342 113 6 chr9 45312232 45312391 -78763781 + MER58A DNA MER1_type 30 205 -19 5 930 474 18 0 0 chr9 45313469 45313524 -78762648 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 930 258 279 92 33 chr9 45313615 45313767 -78762405 - MER117 DNA MER1_type -34 163 3 5 930 576 200 0 0 chr9 45314119 45314294 -78761878 + (TG)n Simple_repeat Simple_repeat 2 176 0 5 930 180 200 0 0 chr9 45314347 45314402 -78761770 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 930 881 133 0 11 chr9 45314443 45314625 -78761547 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 930 438 273 129 103 chr9 45314629 45314784 -78761388 - RSINE1 SINE B4 -1 164 6 5 930 358 343 62 33 chr9 45314909 45315153 -78761019 - MER58B DNA MER1_type 0 341 91 5 930 185 262 69 81 chr9 45315428 45315515 -78760657 + L2b LINE L2 3266 3351 -24 5 930 353 198 48 77 chr9 45316285 45316389 -78759783 + PB1D10 SINE Alu 1 101 -16 5 930 281 197 15 0 chr9 45316389 45316455 -78759717 + GA-rich Low_complexity Low_complexity 3 69 0 5 930 231 88 0 0 chr9 45316736 45316770 -78759402 + (A)n Simple_repeat Simple_repeat 1 34 0 5 930 648 295 0 0 chr9 45316836 45316992 -78759180 - B4A SINE B4 -10 282 127 5 930 220 154 159 58 chr9 45317009 45317078 -78759094 - B3A SINE B2 -121 77 2 5 930 23 0 0 0 chr9 45318333 45318356 -78757816 + AT_rich Low_complexity Low_complexity 1 23 0 5 930 192 266 15 30 chr9 45318719 45318785 -78757387 + L3 LINE CR1 2172 2236 -2253 5 930 27 0 0 0 chr9 45318858 45318885 -78757287 + AT_rich Low_complexity Low_complexity 1 27 0 5 930 23 0 0 0 chr9 45319302 45319325 -78756847 + AT_rich Low_complexity Low_complexity 1 23 0 5 930 238 294 22 0 chr9 45319667 45319759 -78756413 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 930 312 200 0 0 chr9 45319763 45319833 -78756339 + (TATG)n Simple_repeat Simple_repeat 1 70 0 5 930 1031 268 65 18 chr9 45319834 45320111 -78756061 - B4 SINE B4 -1 291 2 5 930 1203 85 0 68 chr9 45320534 45320724 -78755448 - L1_Mus4 LINE L1 -3 6633 6457 5 930 487 139 0 0 chr9 45320724 45320796 -78755376 + L1_Mus4 LINE L1 6393 6464 -172 5 930 3150 223 112 44 chr9 45321075 45321878 -78754294 - RMER13A LTR ERVK -2 858 1 5 930 488 262 122 133 chr9 45322274 45322635 -78753537 + MLT1A LTR MaLR 6 362 -12 5 930 294 280 28 57 chr9 45322728 45322834 -78753338 - MIRb SINE MIR -68 200 98 5 930 227 325 350 0 chr9 45323174 45323297 -78752875 - MIRb SINE MIR -3 259 94 5 930 859 199 7 0 chr9 45324415 45324556 -78751616 - B1_Mur2 SINE Alu -7 142 1 5 930 267 294 117 14 chr9 45325549 45325694 -78750478 - B4 SINE B4 -16 276 117 5 930 396 0 0 0 chr9 45326216 45326260 -78749912 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 930 256 48 48 0 chr9 45326924 45326966 -78749206 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 930 342 304 0 22 chr9 45326997 45327057 -78749115 + polypyrimidine Low_complexity Low_complexity 79 138 0 5 930 300 70 0 0 chr9 45327057 45327100 -78749072 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 5 930 342 304 0 22 chr9 45327100 45327177 -78748995 + polypyrimidine Low_complexity Low_complexity 5 78 0 5 930 208 322 85 11 chr9 45327217 45327311 -78748861 + MIRb SINE MIR 86 186 -90 5 930 180 333 87 54 chr9 45328488 45328637 -78747535 - L2c LINE L2 0 3387 3234 5 930 610 249 109 159 chr9 45328860 45329099 -78747073 + B4 SINE B4 1 227 -65 5 930 738 239 44 6 chr9 45330440 45330600 -78745572 - ORR1D2 LTR MaLR -204 166 1 5 930 1306 155 92 3 chr9 45330600 45330854 -78745318 - ORR1D2-int LTR MaLR -53 1527 1098 5 930 749 262 138 101 chr9 45331531 45331775 -78744397 + L1MB3 LINE L1 5304 5539 -644 5 930 1263 48 0 0 chr9 45331775 45331922 -78744250 - B1_Mus2 SINE Alu 0 147 1 5 930 749 262 138 101 chr9 45331922 45332191 -78743981 + L1MB3 LINE L1 5540 5836 -347 5 930 275 325 87 9 chr9 45332374 45332489 -78743683 + MIRb SINE MIR 23 153 -115 5 930 873 266 135 52 chr9 45332994 45333319 -78742853 - Lx5 LINE L1 0 7050 6699 5 930 1085 69 7 0 chr9 45333373 45333517 -78742655 + B1_Mus2 SINE Alu 2 146 -1 5 930 185 83 28 0 chr9 45333518 45333554 -78742618 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 5 930 1012 208 34 0 chr9 45333945 45334152 -78742020 - B3 SINE B2 0 216 3 5 930 214 266 37 37 chr9 45334318 45334400 -78741772 - MIRb SINE MIR -123 145 64 5 930 423 52 0 0 chr9 45334580 45334638 -78741534 + (TCTCTG)n Simple_repeat Simple_repeat 1 58 0 5 930 292 271 14 0 chr9 45334753 45334823 -78741349 - ID4 SINE ID -11 72 2 5 930 290 299 0 13 chr9 45334831 45334909 -78741263 - PB1D10 SINE Alu -2 115 39 5 930 643 317 78 27 chr9 45335089 45335345 -78740827 + B4A SINE B4 1 269 -23 5 930 450 0 0 0 chr9 45335345 45335395 -78740777 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 930 372 228 0 0 chr9 45336106 45336251 -78739921 + GA-rich Low_complexity Low_complexity 2 146 0 5 930 452 383 76 19 chr9 45336675 45337045 -78739127 + L3 LINE CR1 3442 3832 -657 5 930 222 277 15 0 chr9 45337138 45337203 -78738969 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 930 279 0 0 0 chr9 45337649 45337680 -78738492 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 930 432 37 0 0 chr9 45339401 45339455 -78736717 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 930 189 0 0 0 chr9 45339467 45339488 -78736684 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 5 930 296 121 35 82 chr9 45339732 45339903 -78736269 + (TCTG)n Simple_repeat Simple_repeat 4 166 0 5 930 424 151 50 12 chr9 45339933 45340094 -78736078 + (TCTG)n Simple_repeat Simple_repeat 1 167 0 5 930 486 0 0 0 chr9 45340869 45340923 -78735249 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 930 408 311 37 0 chr9 45340925 45341060 -78735112 - B4A SINE B4 -151 141 2 5 930 372 258 129 25 chr9 45341363 45341526 -78734646 - RMER30 DNA MER1_type -22 180 1 5 930 954 65 0 0 chr9 45341561 45341684 -78734488 + B2_Mm2 SINE B2 4 126 -69 5 930 189 0 0 0 chr9 45341696 45341717 -78734455 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5 930 448 105 108 144 chr9 45341735 45341846 -78734326 + PB1D9 SINE Alu 14 120 0 5 930 205 323 71 51 chr9 45342325 45342423 -78733749 - MIRc SINE MIR -84 184 85 5 930 284 229 33 0 chr9 45343255 45343316 -78732856 + ID4 SINE ID 8 70 -13 5 930 531 0 0 0 chr9 45343327 45343386 -78732786 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 930 265 326 41 0 chr9 45346468 45346566 -78729606 - MIR SINE MIR -154 108 7 5 930 23 0 0 0 chr9 45348419 45348442 -78727730 + AT_rich Low_complexity Low_complexity 1 23 0 5 930 291 262 152 24 chr9 45348797 45348922 -78727250 - MER5A1 DNA MER1_type 0 166 26 5 930 414 298 30 15 chr9 45349127 45349260 -78726912 + B1F SINE Alu 10 144 -5 5 930 184 300 48 36 chr9 45350437 45350520 -78725652 + L2a LINE L2 3315 3398 -28 5 930 187 239 0 0 chr9 45350547 45350593 -78725579 + L4 LINE RTE 1685 1730 -299 5 931 314 400 57 8 chr9 45350951 45351198 -78724974 + MIR SINE MIR 3 261 -1 5 931 680 248 99 20 chr9 45352688 45352890 -78723282 + ID_B1 SINE B4 3 220 -4 5 931 293 0 27 0 chr9 45352911 45352948 -78723224 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 931 254 268 196 0 chr9 45353128 45353225 -78722947 - MIR SINE MIR -141 121 6 5 931 252 256 77 0 chr9 45353301 45353379 -78722793 - MIRc SINE MIR -101 167 84 5 931 535 250 22 7 chr9 45356228 45356365 -78719807 - ID_B1 SINE B4 -2 222 84 5 931 425 200 312 11 chr9 45357342 45357522 -78718650 + B4A SINE B4 1 234 -58 5 931 523 202 0 0 chr9 45357529 45357623 -78718549 + RSINE1 SINE B4 14 107 -58 5 931 192 336 48 0 chr9 45357913 45358017 -78718155 + L2a LINE L2 3317 3425 -1 5 931 309 89 0 0 chr9 45359241 45359286 -78716886 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 931 812 295 122 12 chr9 45359291 45359545 -78716627 - B4A SINE B4 -10 282 1 6 931 258 305 63 72 chr9 45360892 45361061 -78715111 - MIRc SINE MIR -77 191 19 6 931 228 299 200 21 chr9 45361699 45361784 -78714388 + Arthur1A DNA Tip100 5 105 -72 6 931 321 47 0 0 chr9 45361792 45361835 -78714337 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 931 1123 55 0 14 chr9 45361835 45361973 -78714199 - B1_Mm SINE Alu -9 138 1 6 931 225 299 200 21 chr9 45361973 45362027 -78714145 + Arthur1A DNA Tip100 106 169 -8 6 931 206 265 65 50 chr9 45362934 45363073 -78713099 - MIRc SINE MIR -113 155 15 6 931 185 343 59 29 chr9 45364356 45364458 -78711714 - MER5A DNA MER1_type -29 160 56 6 931 316 288 0 0 chr9 45364507 45364580 -78711592 - ID4_ SINE ID -8 75 3 6 931 286 322 61 0 chr9 45365020 45365135 -78711037 - L3 LINE CR1 -240 4249 4128 6 931 232 306 28 0 chr9 45366304 45366376 -78709796 - B1F SINE Alu -11 138 65 6 931 237 165 165 16 chr9 45367672 45367750 -78708422 + MIR SINE MIR 62 154 -114 6 931 865 275 3 93 chr9 45368613 45368934 -78707238 + B4 SINE B4 1 292 0 6 931 402 260 126 0 chr9 45369657 45369784 -78706388 - L4 LINE RTE -194 1835 1693 6 931 471 230 17 34 chr9 45370570 45370687 -78705485 + PB1D9 SINE Alu 1 115 -5 6 931 671 112 9 0 chr9 45370700 45370807 -78705365 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 6 931 247 355 56 7 chr9 45370948 45371090 -78705082 - MIRb SINE MIR -104 164 16 6 931 411 310 108 0 chr9 45371511 45371669 -78704503 + MIRb SINE MIR 28 202 -66 6 931 558 229 93 12 chr9 45372605 45372777 -78703395 - L1MB7 LINE L1 -5 6173 5988 6 931 1032 278 61 46 chr9 45372793 45373247 -78702925 - L1MB7 LINE L1 -509 5935 5468 6 931 436 231 0 114 chr9 45373964 45374096 -78702076 + PB1D10 SINE Alu 1 117 0 6 931 225 224 0 0 chr9 45374531 45374589 -78701583 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 931 1872 155 28 31 chr9 45377495 45377855 -78698317 - ORR1B2 LTR MaLR -8 359 1 6 931 274 269 95 49 chr9 45377861 45377995 -78698177 - MER63A DNA AcHobo -60 150 13 6 931 180 294 88 0 chr9 45379997 45380065 -78696107 + MIRc SINE MIR 108 181 -87 6 931 486 0 0 0 chr9 45380788 45380842 -78695330 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 931 360 43 0 0 chr9 45381776 45381822 -78694350 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 931 387 0 0 0 chr9 45381822 45381864 -78694308 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 931 199 324 126 54 chr9 45381962 45382184 -78693988 - L2 LINE L2 -648 2771 2534 6 931 210 301 154 11 chr9 45382193 45382368 -78693804 + MIRc SINE MIR 29 228 -40 6 931 234 275 226 39 chr9 45382921 45383076 -78693096 + B2_Mm2 SINE B2 2 185 -10 6 931 837 253 72 20 chr9 45383333 45383583 -78692589 + L1MB8 LINE L1 5440 5702 -476 6 931 670 266 86 3 chr9 45383585 45383832 -78692340 + MER2 DNA MER2_type 26 304 -41 6 931 1484 203 42 15 chr9 45383832 45384209 -78691963 - MTD LTR MaLR 0 419 1 6 931 978 284 68 24 chr9 45384256 45384684 -78691488 + L1MB8 LINE L1 5726 6169 -9 6 931 411 113 0 0 chr9 45385262 45385324 -78690848 + (TCTG)n Simple_repeat Simple_repeat 2 63 0 6 931 360 43 0 0 chr9 45385324 45385369 -78690803 + (ATTG)n Simple_repeat Simple_repeat 2 47 0 6 931 525 216 10 0 chr9 45385375 45385472 -78690700 - MTC LTR MaLR -323 98 1 6 931 219 360 20 39 chr9 45386409 45386562 -78689610 + CT-rich Low_complexity Low_complexity 5 154 0 6 931 597 255 6 24 chr9 45386654 45386819 -78689353 + RSINE1 SINE B4 2 163 -2 6 931 225 154 0 0 chr9 45386836 45386875 -78689297 + (ATG)n Simple_repeat Simple_repeat 2 40 0 6 931 344 290 121 13 chr9 45389096 45389253 -78686919 + MIRb SINE MIR 75 248 -20 6 931 739 186 7 14 chr9 45389386 45389528 -78686644 + B1_Mur1 SINE Alu 3 143 -6 6 931 1229 76 16 21 chr9 45389994 45390182 -78685990 + B2_Mm2 SINE B2 1 187 -8 6 931 258 269 2 73 chr9 45390575 45390685 -78685487 + MIR3 SINE MIR 73 170 -38 6 931 238 222 48 197 chr9 45392018 45392226 -78683946 - MTEb LTR MaLR -22 357 181 6 931 237 273 0 72 chr9 45393836 45393919 -78682253 - MTE2a LTR MaLR -22 357 281 6 931 920 255 95 89 chr9 45394110 45394468 -78681704 + MTEa LTR MaLR 18 377 -2 6 931 193 354 35 17 chr9 45395247 45395362 -78680810 + MER5B DNA MER1_type 62 178 0 6 931 214 218 218 0 chr9 45396323 45396401 -78679771 + MIR SINE MIR 41 135 -73 6 931 206 295 11 11 chr9 45396694 45396783 -78679389 - MIRc SINE MIR -128 140 52 6 931 780 250 107 4 chr9 45397587 45397848 -78678324 - B4A SINE B4 -3 289 2 6 931 318 271 35 19 chr9 45398429 45398546 -78677626 - ID4 SINE ID -31 121 8 6 931 358 232 49 0 chr9 45398721 45398803 -78677369 - RSINE1 SINE B4 -76 89 4 6 931 395 358 50 23 chr9 45398806 45399026 -78677146 - MIRb SINE MIR -7 261 36 6 931 410 267 112 37 chr9 45399690 45399877 -78676295 - MIRb SINE MIR -34 234 34 6 931 322 255 32 0 chr9 45401480 45401574 -78674598 + L3 LINE CR1 4315 4411 -78 6 931 976 39 8 8 chr9 45401798 45401928 -78674244 + (GAGAA)n Simple_repeat Simple_repeat 5 134 0 6 931 196 250 219 0 chr9 45402693 45402757 -78673415 + MIRb SINE MIR 109 186 -82 6 931 700 238 13 0 chr9 45402759 45402841 -78673331 + B4 SINE B4 5 88 -204 6 931 277 282 136 0 chr9 45402841 45402944 -78673228 + PB1D9 SINE Alu 4 120 0 6 931 768 100 6 39 chr9 45402946 45403102 -78673070 + (GGAA)n Simple_repeat Simple_repeat 3 153 0 6 931 330 270 0 0 chr9 45403102 45403165 -78673007 + B4 SINE B4 216 278 -14 6 931 283 333 0 0 chr9 45403178 45403271 -78672901 + (CA)n Simple_repeat Simple_repeat 1 93 0 6 931 373 337 40 6 chr9 45403531 45403707 -78672465 - L1ME3A LINE L1 -7 6166 5985 6 931 519 242 84 32 chr9 45403746 45403900 -78672272 + RSINE1 SINE B4 4 165 0 6 931 822 65 51 21 chr9 45403909 45404145 -78672027 + (CA)n Simple_repeat Simple_repeat 1 242 0 6 931 800 233 136 47 chr9 45404740 45404997 -78671175 + B4A SINE B4 5 284 -8 6 931 458 197 7 0 chr9 45405703 45405845 -78670327 + (CA)n Simple_repeat Simple_repeat 1 143 0 6 931 363 348 58 19 chr9 45406598 45406754 -78669418 + MIRc SINE MIR 32 196 -72 6 931 364 127 84 0 chr9 45407076 45407147 -78669025 + HAL1-3A_ME LINE L1 1974 2050 -808 6 931 911 229 179 0 chr9 45408342 45408399 -78667773 - B4 SINE B4 0 292 235 6 931 320 0 25 0 chr9 45408399 45408439 -78667733 + (TAA)n Simple_repeat Simple_repeat 1 41 0 6 931 911 229 179 0 chr9 45408439 45408621 -78667551 - B4 SINE B4 -58 234 11 6 931 504 0 0 0 chr9 45410194 45410250 -78665922 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 931 381 255 180 47 chr9 45410599 45410854 -78665318 + B4A SINE B4 4 292 0 6 931 790 200 0 0 chr9 45410898 45411038 -78665134 + B1_Mur3 SINE Alu 1 140 -9 6 931 647 253 48 0 chr9 45411063 45411209 -78664963 + B3 SINE B2 1 153 -63 6 931 388 224 58 17 chr9 45411259 45411362 -78664810 - PB1D7 SINE Alu -1 116 7 6 931 450 0 0 0 chr9 45411410 45411460 -78664712 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 931 272 278 64 43 chr9 45411532 45411626 -78664546 - B4A SINE B4 -8 284 189 6 931 312 221 12 83 chr9 45411659 45411743 -78664429 - B4A SINE B4 -174 118 41 6 931 193 286 39 39 chr9 45412264 45412366 -78663806 - MIR SINE MIR -130 132 31 6 931 891 286 131 3 chr9 45414056 45414149 -78662023 + ORR1E LTR MaLR 3 97 -262 6 931 1131 22 0 0 chr9 45414149 45414283 -78661889 + (GGAA)n Simple_repeat Simple_repeat 4 137 0 6 931 891 286 131 3 chr9 45414283 45414501 -78661671 + ORR1E LTR MaLR 98 353 -6 6 931 197 340 95 20 chr9 45414611 45414758 -78661414 - MIRb SINE MIR -51 217 60 6 931 842 102 0 0 chr9 45415252 45415370 -78660802 - B1_Mus1 SINE Alu 0 148 31 6 931 213 308 121 32 chr9 45417323 45417447 -78658725 - MIR SINE MIR -91 171 37 6 931 237 330 21 0 chr9 45417770 45417864 -78658308 + Charlie15a DNA MER1_type 116 211 -13 6 931 313 274 17 78 chr9 45417957 45418072 -78658100 + B4A SINE B4 123 230 -62 6 931 775 233 29 19 chr9 45418074 45418284 -78657888 + B3 SINE B2 5 216 0 6 931 426 39 0 0 chr9 45418368 45418420 -78657752 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 931 955 242 4 51 chr9 45420588 45420827 -78655345 + B4A SINE B4 1 227 -65 6 931 584 252 0 22 chr9 45420827 45420961 -78655211 + RSINE1 SINE B4 2 132 -33 6 931 405 0 0 0 chr9 45420970 45421015 -78655157 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 931 309 284 0 0 chr9 45421028 45421095 -78655077 + B4 SINE B4 222 288 -4 6 931 663 192 16 0 chr9 45421514 45421639 -78654533 - B1_Mur2 SINE Alu -14 135 9 6 931 411 21 0 0 chr9 45422629 45422677 -78653495 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 931 260 165 86 25 chr9 45422730 45422811 -78653361 + L1ME4a LINE L1 6039 6124 0 6 931 465 34 0 0 chr9 45422999 45423058 -78653114 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 931 582 0 39 0 chr9 45423058 45423135 -78653037 + (GA)n Simple_repeat Simple_repeat 1 81 0 6 931 211 278 0 36 chr9 45424004 45424060 -78652112 + BC1_Mm scRNA scRNA 7 60 -92 6 931 985 243 14 5 chr9 45424010 45424221 -78651951 + ID_B1 SINE B4 12 224 0 6 931 224 329 65 39 chr9 45424982 45425137 -78651035 + MIRb SINE MIR 86 244 -24 6 931 265 341 11 45 chr9 45426650 45426671 -78649501 - ID_B1 SINE B4 -127 97 12 6 931 313 294 0 0 chr9 45426671 45426739 -78649433 - ID4 SINE ID -4 79 12 6 931 339 89 0 0 chr9 45427271 45427327 -78648845 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 931 797 224 19 61 chr9 45427360 45427574 -78648598 - B4A SINE B4 -86 206 2 7 931 229 329 0 12 chr9 45428663 45428743 -78647429 + G-rich Low_complexity Low_complexity 5 83 0 7 931 223 267 0 0 chr9 45429774 45429819 -78646353 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 931 396 336 87 50 chr9 45429844 45430063 -78646109 - B4 SINE B4 -18 274 48 7 931 302 314 25 33 chr9 45431068 45431190 -78644982 - MIRc SINE MIR -141 127 7 7 931 405 0 0 0 chr9 45432462 45432507 -78643665 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 931 306 0 0 0 chr9 45433330 45433364 -78642808 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 931 222 299 128 0 chr9 45434914 45435031 -78641141 + MIR SINE MIR 73 204 -58 7 931 1075 244 89 3 chr9 45435083 45435375 -78640797 + L1ME1 LINE L1 5857 6173 -6 7 931 243 280 113 42 chr9 45435833 45436001 -78640171 - MIR SINE MIR -2 260 81 7 931 215 62 0 0 chr9 45436094 45436126 -78640046 - MIR SINE MIR -3 259 228 7 931 320 0 25 0 chr9 45436150 45436190 -78639982 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 931 249 33 0 0 chr9 45436190 45436219 -78639953 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 931 821 282 55 29 chr9 45436263 45436573 -78639599 - B4A SINE B4 0 292 1 7 931 390 302 33 55 chr9 45436573 45436755 -78639417 - MIRb SINE MIR -48 220 43 7 931 30 0 0 0 chr9 45437135 45437165 -78639007 + AT_rich Low_complexity Low_complexity 1 30 0 7 931 684 354 81 18 chr9 45437194 45437649 -78638523 - L2a LINE L2 0 3426 2943 7 931 446 261 169 7 chr9 45437688 45437837 -78638335 + ID_B1 SINE B4 14 187 -37 7 931 1532 109 121 69 chr9 45437837 45438142 -78638030 + ORR1A4 LTR MaLR 1 321 -8 7 931 400 242 22 0 chr9 45438146 45438237 -78637935 + MERVL-int LTR ERVL 1 93 -5392 7 931 1234 62 17 17 chr9 45438299 45438452 -78637720 + B2_Mm2 SINE B2 3 155 -40 7 931 279 0 0 0 chr9 45438452 45438483 -78637689 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 7 931 1234 62 17 17 chr9 45438483 45438510 -78637662 + B2_Mm2 SINE B2 156 182 -13 7 931 219 355 156 13 chr9 45438511 45438896 -78637276 - L2a LINE L2 -590 2829 2390 7 931 432 0 0 0 chr9 45438933 45438981 -78637191 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 931 224 30 0 29 chr9 45440476 45440510 -78635662 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 7 931 187 350 12 0 chr9 45441891 45441971 -78634201 + L2c LINE L2 3041 3121 -266 7 931 258 263 26 13 chr9 45442197 45442274 -78633898 - MLT1J2 LTR MaLR -333 115 38 7 931 2709 81 5 27 chr9 45442379 45442786 -78633386 - L1_Mus3 LINE L1 -5 6633 6236 7 931 792 84 0 0 chr9 45442788 45442895 -78633277 - U6 snRNA snRNA 0 107 1 7 931 354 192 128 0 chr9 45442966 45443044 -78633128 - RMER15-int LTR ERVL -2621 2378 2291 7 931 839 362 39 50 chr9 45443076 45443634 -78632538 - RMER15-int LTR ERVL -2818 2181 1630 7 931 449 266 118 125 chr9 45443646 45443942 -78632230 - RMER15 LTR ERVL -7 568 275 7 931 21 0 0 0 chr9 45445287 45445308 -78630864 + AT_rich Low_complexity Low_complexity 1 21 0 7 931 1308 151 272 30 chr9 45447377 45447678 -78628494 - ORR1D1 LTR MaLR 0 374 1 7 931 197 255 18 18 chr9 45447852 45447908 -78628264 + MIRb SINE MIR 186 241 -27 7 931 322 312 9 18 chr9 45447912 45448023 -78628149 - MLT1A LTR MaLR 0 374 265 7 931 274 272 85 21 chr9 45448143 45448237 -78627935 - MLT1A LTR MaLR -308 100 1 7 931 948 314 43 43 chr9 45448441 45448811 -78627361 - MTEa LTR MaLR -7 372 3 7 931 391 246 111 58 chr9 45449098 45449288 -78626884 - MER20 DNA MER1_type -5 214 15 7 931 443 206 11 0 chr9 45451568 45451660 -78624512 - L1MB3 LINE L1 -274 5909 5817 7 931 250 343 194 24 chr9 45451782 45452029 -78624143 - B4A SINE B4 -3 289 1 7 931 433 305 6 9 chr9 45452054 45452223 -78623949 - L1MB3 LINE L1 -376 5804 5635 7 931 867 300 50 33 chr9 45452251 45452788 -78623384 - L1MB3 LINE L1 -618 5553 5002 7 931 335 369 33 33 chr9 45453217 45453427 -78622745 - MIRc SINE MIR -9 259 50 7 931 1295 238 59 48 chr9 45454255 45454626 -78621546 + MTEa LTR MaLR 1 375 -4 7 931 1196 229 52 71 chr9 45454646 45455012 -78621160 - ORR1D1 LTR MaLR -15 359 1 7 931 415 265 0 0 chr9 45455522 45455612 -78620560 + PB1D7 SINE Alu 23 112 -8 7 931 423 0 0 0 chr9 45455612 45455659 -78620513 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 7 931 913 282 107 17 chr9 45456084 45456438 -78619734 + Tigger7 DNA MER2_type 2106 2491 0 7 931 1603 190 68 21 chr9 45458340 45458679 -78617493 + ORR1D2 LTR MaLR 16 370 0 7 931 767 0 39 0 chr9 45458726 45458829 -78617343 + (TGG)n Simple_repeat Simple_repeat 3 109 0 7 931 274 176 14 56 chr9 45459685 45459757 -78616415 + CT-rich Low_complexity Low_complexity 1 69 0 7 931 288 303 166 20 chr9 45460825 45461000 -78615172 - MIR3 SINE MIR -15 193 2 7 931 672 324 89 44 chr9 45462292 45462751 -78613421 - L1MB2 LINE L1 -119 6052 5573 7 931 623 239 30 0 chr9 45462832 45462966 -78613206 + B1F SINE Alu 12 149 0 7 931 288 322 67 0 chr9 45463127 45463276 -78612896 - L2 LINE L2 -517 2902 2744 7 931 1165 77 0 0 chr9 45463666 45463809 -78612363 + B1_Mm SINE Alu 3 145 -2 7 931 279 0 0 0 chr9 45463810 45463841 -78612331 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 931 396 0 0 0 chr9 45463841 45463885 -78612287 + (GCATG)n Simple_repeat Simple_repeat 1 44 0 7 931 347 311 135 12 chr9 45463888 45464051 -78612121 + B4A SINE B4 106 288 -4 7 931 432 55 0 0 chr9 45464055 45464110 -78612062 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 931 447 19 0 0 chr9 45465559 45465611 -78610561 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 931 233 197 16 0 chr9 45466505 45466566 -78609606 + G-rich Low_complexity Low_complexity 4 65 0 7 931 518 295 45 6 chr9 45466660 45466817 -78609355 + RSINE1 SINE B4 3 165 0 7 931 564 91 68 0 chr9 45466862 45466994 -78609178 + (CA)n Simple_repeat Simple_repeat 2 142 0 7 931 551 251 114 158 chr9 45467142 45467319 -78608853 + B4 SINE B4 6 202 -90 7 931 1474 75 37 0 chr9 45467319 45467506 -78608666 - B2_Mm2 SINE B2 -1 194 1 7 931 551 251 114 158 chr9 45467506 45467626 -78608546 + B4 SINE B4 203 290 -2 7 931 216 0 0 0 chr9 45467637 45467661 -78608511 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 931 247 311 89 0 chr9 45468625 45468715 -78607457 - MIRb SINE MIR -138 130 33 7 931 281 274 72 12 chr9 45468727 45468824 -78607348 + B1F2 SINE Alu 9 111 -6 7 931 1396 78 0 50 chr9 45468878 45469079 -78607093 + B2_Mm2 SINE B2 1 191 -4 7 931 582 204 3 8 chr9 45469821 45470177 -78605995 + (TG)n Simple_repeat Simple_repeat 1 353 0 7 931 343 311 57 16 chr9 45470684 45470808 -78605364 - B1F1 SINE Alu -15 134 6 7 931 278 281 0 58 chr9 45470734 45470821 -78605351 - ID_B1 SINE B4 -67 157 76 7 931 753 246 126 0 chr9 45470870 45471069 -78605103 - ID_B1 SINE B4 0 224 1 7 931 256 291 0 12 chr9 45471071 45471151 -78605021 - Charlie9 DNA MER1_type -2645 112 34 7 931 977 64 115 0 chr9 45473539 45473696 -78602476 + B2_Mm2 SINE B2 21 195 0 7 931 385 247 0 11 chr9 45474802 45474892 -78601280 + B1F1 SINE Alu 2 90 -59 7 931 630 270 47 0 chr9 45474940 45475088 -78601084 + ID_B1 SINE B4 4 158 -66 7 931 723 231 27 0 chr9 45475092 45475239 -78600933 + RSINE1 SINE B4 7 157 -8 7 931 321 159 0 0 chr9 45475251 45475314 -78600858 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 931 194 389 36 7 chr9 45477837 45477977 -78598195 - MIR3 SINE MIR -3 205 62 7 931 252 422 72 0 chr9 45478814 45478980 -78597192 + MER91A DNA Tip100 19 196 0 7 931 270 73 0 0 chr9 45479677 45479718 -78596454 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 7 931 451 221 28 28 chr9 45479771 45479878 -78596294 - PB1D10 SINE Alu -1 116 10 7 931 310 286 10 30 chr9 45479789 45479890 -78596282 - ID_B1 SINE B4 -48 176 78 7 931 269 167 0 0 chr9 45479891 45479939 -78596233 - L1MA6 LINE L1 -5 6295 6248 7 931 362 251 12 35 chr9 45480367 45480540 -78595632 + C-rich Low_complexity Low_complexity 5 173 0 7 931 686 62 10 0 chr9 45481118 45481214 -78594958 + (TC)n Simple_repeat Simple_repeat 2 98 0 7 932 630 202 0 0 chr9 45484906 45485069 -78591103 + (TG)n Simple_repeat Simple_repeat 1 163 0 7 932 309 177 40 26 chr9 45485092 45485243 -78590929 + (TCTG)n Simple_repeat Simple_repeat 3 155 0 7 932 185 313 122 53 chr9 45487093 45487282 -78588890 - L2b LINE L2 -67 3308 3107 7 932 353 22 0 21 chr9 45487372 45487419 -78588753 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 932 628 302 132 8 chr9 45487449 45487706 -78588466 - B4A SINE B4 -2 290 2 7 932 464 300 78 10 chr9 45488512 45488704 -78587468 - RMER15 LTR ERVL -1 574 370 7 932 342 0 0 0 chr9 45489883 45489921 -78586251 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 932 450 0 0 0 chr9 45489921 45489970 -78586202 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 932 200 338 79 22 chr9 45490981 45491120 -78585052 + MIRc SINE MIR 2 148 -120 7 932 305 275 0 0 chr9 45492611 45492691 -78583481 - ID4 SINE ID -3 80 1 7 932 285 371 38 8 chr9 45493861 45493994 -78582178 + MIRc SINE MIR 85 221 -47 7 932 360 0 0 0 chr9 45494541 45494581 -78581591 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 932 225 0 0 0 chr9 45494581 45494605 -78581567 + (CG)n Simple_repeat Simple_repeat 2 26 0 7 932 207 100 0 0 chr9 45495064 45495094 -78581078 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 932 378 0 0 0 chr9 45495094 45495135 -78581037 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 932 320 278 82 0 chr9 45495548 45495645 -78580527 + MIRb SINE MIR 40 144 -124 8 932 627 360 110 19 chr9 45495728 45496156 -78580016 - MLT2B2 LTR ERVL -48 467 1 8 932 591 15 0 0 chr9 45496705 45496773 -78579399 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 8 932 926 74 0 15 chr9 45496773 45496910 -78579262 + (GGGA)n Simple_repeat Simple_repeat 3 137 0 8 932 1202 227 0 9 chr9 45497725 45497943 -78578229 - B3 SINE B2 0 216 1 8 932 690 13 0 0 chr9 45499139 45499218 -78576954 + (CCCCAG)n Simple_repeat Simple_repeat 4 82 0 8 932 320 239 0 52 chr9 45500771 45500868 -78575304 - MLT1D LTR MaLR -4 501 410 1 932 254 211 88 0 chr9 45501336 45501393 -78574779 + MER58C DNA MER1_type 152 213 -2 2 932 400 257 10 19 chr9 45501530 45501633 -78574539 + MIR SINE MIR 161 262 0 3 932 736 238 184 0 chr9 45502917 45503102 -78573070 - ID_B1 SINE B4 0 224 6 4 932 229 230 67 68 chr9 45503348 45503466 -78572706 + MIR SINE MIR 55 169 -93 5 932 208 182 44 22 chr9 45503438 45503483 -78572689 + L2c LINE L2 3323 3368 -19 6 932 235 231 0 0 chr9 45503936 45503975 -78572197 + MIRm SINE MIR 90 128 -148 7 932 207 0 0 0 chr9 45503982 45504005 -78572167 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 932 225 65 0 0 chr9 45504005 45504036 -78572136 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 932 752 133 24 24 chr9 45504235 45504358 -78571814 + B1_Mur2 SINE Alu 21 143 -6 1 932 264 264 14 14 chr9 45505407 45505480 -78570692 + MIRb SINE MIR 115 187 -81 1 932 369 0 0 0 chr9 45505688 45505729 -78570443 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 932 293 245 10 0 chr9 45505904 45506006 -78570166 + CT-rich Low_complexity Low_complexity 3 105 0 1 932 262 206 66 40 chr9 45506006 45506082 -78570090 - FAM SINE Alu -76 235 158 1 932 205 191 105 101 chr9 45506103 45506193 -78569979 + MIRc SINE MIR 66 165 -111 1 932 383 308 61 30 chr9 45506217 45506381 -78569791 - MER33 DNA MER1_type -147 177 9 1 932 195 296 32 51 chr9 45506585 45506694 -78569478 - MIR3 SINE MIR -142 126 15 1 932 250 291 121 52 chr9 45506913 45507029 -78569143 + MER91A DNA Tip100 8 131 -65 1 932 243 0 0 0 chr9 45507214 45507241 -78568931 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 932 753 268 58 0 chr9 45508004 45508194 -78567978 + B4A SINE B4 2 202 -90 2 932 547 0 60 0 chr9 45508230 45508313 -78567859 + (CA)n Simple_repeat Simple_repeat 2 89 0 2 932 883 239 85 120 chr9 45509103 45509245 -78566927 + Charlie4a DNA MER1_type 21 154 -354 2 932 315 0 0 0 chr9 45509245 45509280 -78566892 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 932 450 0 0 0 chr9 45509280 45509329 -78566843 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 932 883 239 85 120 chr9 45509329 45509609 -78566563 + Charlie4a DNA MER1_type 155 428 -80 2 932 188 220 136 0 chr9 45511211 45511270 -78564902 + L3 LINE CR1 706 772 -3717 2 932 344 208 82 20 chr9 45511996 45512143 -78564029 + (CAGGG)n Simple_repeat Simple_repeat 4 159 0 2 932 516 16 0 0 chr9 45512783 45512844 -78563328 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 932 236 349 44 60 chr9 45512951 45513134 -78563038 + YREP_Mm Unknown Unknown 127 306 -1506 2 932 620 286 5 80 chr9 45513005 45513155 -78563017 - ID_B1 SINE B4 -7 217 79 2 932 342 61 0 0 chr9 45513155 45513204 -78562968 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 3 932 620 286 5 80 chr9 45513204 45513254 -78562918 - ID SINE ID -146 78 32 2 932 746 186 56 28 chr9 45514404 45514548 -78561624 + B1_Mur3 SINE Alu 2 149 0 3 932 257 252 109 44 chr9 45514922 45515059 -78561113 - L2 LINE L2 -474 2945 2800 3 932 263 294 23 38 chr9 45516186 45516317 -78559855 + RMER12 LTR ERVK 722 850 -472 3 932 207 0 0 0 chr9 45516317 45516340 -78559832 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 932 234 370 29 94 chr9 45516340 45516402 -78559770 - RMER12 LTR ERVK -364 958 862 3 932 409 182 38 162 chr9 45516402 45516507 -78559665 + RSINE1 SINE B4 74 165 0 3 932 234 370 29 94 chr9 45516507 45516600 -78559572 - RMER12 LTR ERVK -364 861 711 3 932 1238 48 0 0 chr9 45516600 45516746 -78559426 - B1_Mus2 SINE Alu 0 147 2 3 932 234 370 29 94 chr9 45516746 45516762 -78559410 - RMER12 LTR ERVK -612 710 700 3 932 885 258 72 36 chr9 45516763 45517041 -78559131 + B4 SINE B4 2 289 -3 3 932 617 0 14 0 chr9 45518102 45518175 -78557997 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 932 1008 138 0 1 chr9 45518772 45519624 -78556548 + (TG)n Simple_repeat Simple_repeat 1 851 0 4 932 918 293 82 4 chr9 45519684 45519951 -78556221 - B4 SINE B4 -4 288 1 4 932 21 0 0 0 chr9 45519953 45519974 -78556198 + AT_rich Low_complexity Low_complexity 1 21 0 4 932 618 258 0 84 chr9 45520642 45520820 -78555352 - RSINE1 SINE B4 0 165 3 4 932 181 299 199 12 chr9 45521129 45521295 -78554877 - MIRc SINE MIR -66 202 6 4 932 572 252 88 37 chr9 45521490 45521746 -78554426 - MTEb LTR MaLR -1 378 64 4 932 393 22 0 0 chr9 45521818 45521864 -78554308 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 932 207 279 29 0 chr9 45522313 45522381 -78553791 + GA-rich Low_complexity Low_complexity 1 70 0 4 932 459 0 0 0 chr9 45523796 45523847 -78552325 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 932 247 167 0 0 chr9 45523907 45523949 -78552223 + B4 SINE B4 1 42 -250 4 932 210 316 37 37 chr9 45523949 45523989 -78552183 + B2_Mm1t SINE B2 1 82 -111 5 932 334 239 148 0 chr9 45524048 45524136 -78552036 + B4A SINE B4 192 292 0 4 932 913 302 143 24 chr9 45524163 45524750 -78551422 - L1MB4 LINE L1 -17 6163 5507 5 932 351 0 0 0 chr9 45524909 45524948 -78551224 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 932 186 294 181 36 chr9 45524952 45525118 -78551054 - L2a LINE L2 -22 3404 3215 5 932 1632 198 167 0 chr9 45525768 45526127 -78550045 - MTD LTR MaLR 0 419 1 5 932 738 0 0 0 chr9 45526374 45526456 -78549716 + (TTC)n Simple_repeat Simple_repeat 1 82 0 5 932 318 106 0 0 chr9 45526459 45526506 -78549666 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 932 207 0 0 0 chr9 45526506 45526529 -78549643 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 932 793 226 7 0 chr9 45526664 45526810 -78549362 + B1_Mur1 SINE Alu 2 148 -1 5 932 714 175 0 0 chr9 45527000 45527177 -78548995 + CT-rich Low_complexity Low_complexity 2 178 0 5 932 438 20 0 0 chr9 45527177 45527228 -78548944 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 932 296 297 81 0 chr9 45527334 45527445 -78548727 - MER5B DNA MER1_type -5 173 54 6 932 1191 54 0 26 chr9 45529663 45529814 -78546358 + B1_Mus1 SINE Alu 2 148 0 6 932 554 317 0 24 chr9 45532387 45532552 -78543620 - RSINE1 SINE B4 -2 163 3 6 932 1067 274 7 34 chr9 45533768 45534066 -78542106 + B4 SINE B4 2 291 -1 6 932 638 250 163 0 chr9 45534103 45534287 -78541885 + B3 SINE B2 1 214 -2 6 932 23 54 0 0 chr9 45534298 45534335 -78541837 + AT_rich Low_complexity Low_complexity 1 37 0 6 932 1456 80 5 0 chr9 45534342 45534529 -78541643 + B2_Mm1a SINE B2 1 188 -5 6 932 575 92 11 0 chr9 45534529 45534616 -78541556 + (GGA)n Simple_repeat Simple_repeat 1 88 0 6 932 476 352 187 44 chr9 45534939 45535742 -78540430 + L1MEg LINE L1 20 936 -5148 6 932 984 126 12 12 chr9 45535775 45535936 -78540236 + URR1B DNA MER1_type 65 225 0 7 932 281 296 80 20 chr9 45536041 45536141 -78540031 - MER5A DNA MER1_type -75 114 9 7 932 427 327 178 36 chr9 45536173 45536315 -78539857 + L1MEg LINE L1 1036 1197 -4887 6 932 549 44 0 0 chr9 45536315 45536383 -78539789 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 7 932 427 327 178 36 chr9 45536383 45536579 -78539593 + L1MEg LINE L1 1198 1428 -4656 6 932 806 213 142 0 chr9 45536579 45536762 -78539410 + B3 SINE B2 2 210 -6 7 932 427 327 178 36 chr9 45536762 45536781 -78539391 + L1MEg LINE L1 1429 1444 -4640 6 932 697 305 83 28 chr9 45536795 45537160 -78539012 + L1MEg LINE L1 1549 1939 -4303 7 932 373 260 110 0 chr9 45537160 45537260 -78538912 + PB1D10 SINE Alu 2 112 -5 7 932 697 305 83 28 chr9 45537260 45537289 -78538883 + L1MEg LINE L1 1940 1965 -4277 7 932 955 242 15 0 chr9 45537378 45537576 -78538596 - B3 SINE B2 -14 202 2 7 932 262 293 37 0 chr9 45537677 45537759 -78538413 + L1MEg LINE L1 2114 2198 -3948 7 932 417 259 0 0 chr9 45537823 45537908 -78538264 + B4A SINE B4 1 85 -207 7 932 540 165 0 132 chr9 45537949 45538238 -78537934 + (CAGAGA)n Simple_repeat Simple_repeat 1 250 0 7 932 278 257 76 38 chr9 45538501 45538523 -78537649 + ID SINE ID 67 87 -137 7 932 322 223 104 32 chr9 45538523 45538618 -78537554 + PB1D10 SINE Alu 4 114 -6 7 932 578 51 13 0 chr9 45538620 45538698 -78537474 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 8 932 246 128 0 0 chr9 45538725 45538764 -78537408 + (CATG)n Simple_repeat Simple_repeat 1 39 0 8 932 571 121 57 0 chr9 45538777 45538934 -78537238 + (TAGA)n Simple_repeat Simple_repeat 3 168 0 8 932 233 295 167 32 chr9 45539260 45539386 -78536786 - MIRb SINE MIR -12 256 114 8 932 288 302 29 159 chr9 45540349 45540487 -78535685 + RSINE1 SINE B4 2 121 -44 8 932 324 0 0 0 chr9 45540492 45540528 -78535644 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 932 342 0 0 0 chr9 45541990 45542028 -78534144 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 932 310 276 40 20 chr9 45542680 45542780 -78533392 - ORR1E LTR MaLR 0 379 278 8 932 349 302 0 20 chr9 45542911 45543009 -78533163 - ORR1E LTR MaLR -221 138 43 8 932 752 230 53 13 chr9 45543565 45543715 -78532457 + RSINE1 SINE B4 1 156 -9 8 932 371 254 82 66 chr9 45543751 45543873 -78532299 + RSINE1 SINE B4 1 124 -41 8 932 396 0 0 0 chr9 45543873 45543917 -78532255 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 932 3741 50 0 0 chr9 45544014 45544458 -78531714 - L1_Mus1 LINE L1 0 6567 6124 9 932 424 69 0 0 chr9 45544458 45544516 -78531656 + 4.5SRNA scRNA scRNA 10 67 -27 9 932 425 282 141 31 chr9 45544565 45544693 -78531479 - ID_B1 SINE B4 -11 213 72 9 932 894 93 0 0 chr9 45544936 45545054 -78531118 + B1_Mm SINE Alu 23 140 -7 9 932 531 0 0 0 chr9 45545091 45545150 -78531022 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 932 315 155 0 17 chr9 45545154 45545213 -78530959 + HAL1-3A_ME LINE L1 1973 2030 -828 9 932 263 320 12 25 chr9 45545238 45545318 -78530854 - ID_B1 SINE B4 -132 92 14 9 932 253 256 74 40 chr9 45545636 45545811 -78530361 - L1M5 LINE L1 -686 5438 5258 9 932 229 256 90 127 chr9 45546198 45546332 -78529840 + B1F SINE Alu 3 131 -18 9 932 494 258 28 79 chr9 45546264 45546441 -78529731 + B4 SINE B4 122 289 -3 9 932 255 215 0 0 chr9 45546463 45546528 -78529644 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 932 864 129 0 0 chr9 45546674 45547009 -78529163 + (CA)n Simple_repeat Simple_repeat 1 335 0 1 932 195 42 0 0 chr9 45547760 45547784 -78528388 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 932 202 260 0 0 chr9 45549856 45549906 -78526266 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 932 1235 55 0 0 chr9 45551422 45551567 -78524605 + B1_Mus2 SINE Alu 2 146 -1 1 932 345 47 0 0 chr9 45551569 45551612 -78524560 + (GGA)n Simple_repeat Simple_repeat 3 45 0 1 932 1126 44 0 0 chr9 45551612 45551748 -78524424 + B1_Mus2 SINE Alu 6 141 -6 1 932 918 125 0 0 chr9 45551748 45551892 -78524280 + (GAA)n Simple_repeat Simple_repeat 2 145 0 1 932 227 228 70 0 chr9 45552622 45552679 -78523493 + ID4_ SINE ID 21 81 -2 1 932 232 307 99 0 chr9 45552679 45552780 -78523392 + B1_Mur1 SINE Alu 23 133 -16 1 932 207 100 0 0 chr9 45552785 45552815 -78523357 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 932 261 0 0 0 chr9 45553842 45553871 -78522301 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 932 333 0 0 0 chr9 45553871 45553907 -78522265 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 932 215 245 20 0 chr9 45553907 45553956 -78522216 - BC1_Mm scRNA scRNA -83 69 20 1 932 567 147 0 0 chr9 45554094 45554210 -78521962 + (GA)n Simple_repeat Simple_repeat 1 116 0 1 932 292 289 12 12 chr9 45555276 45555360 -78520812 - MamRep38 DNA hAT -1 294 211 1 932 205 341 15 7 chr9 45555711 45555847 -78520325 + (TGAA)n Simple_repeat Simple_repeat 2 138 0 1 932 255 359 7 0 chr9 45555998 45556143 -78520029 + (TGGA)n Simple_repeat Simple_repeat 2 147 0 1 932 560 303 35 66 chr9 45556143 45556369 -78519803 + ID_B1 SINE B4 1 219 -5 1 932 1338 33 16 0 chr9 45556405 45556649 -78519523 + (TGGA)n Simple_repeat Simple_repeat 1 248 0 1 932 1024 145 215 0 chr9 45556893 45557079 -78519093 + URR1A DNA MER1_type 1 226 0 1 932 22 0 0 0 chr9 45558298 45558320 -78517852 + AT_rich Low_complexity Low_complexity 1 22 0 1 932 985 237 89 19 chr9 45558352 45558623 -78517549 + B4A SINE B4 3 292 0 1 932 195 139 0 0 chr9 45559771 45559795 -78516377 + (A)n Simple_repeat Simple_repeat 1 24 0 1 932 1261 48 0 0 chr9 45559795 45559942 -78516230 + B1_Mm SINE Alu 1 147 0 1 932 195 139 0 0 chr9 45559942 45559960 -78516212 + (A)n Simple_repeat Simple_repeat 1 18 0 1 932 333 344 57 0 chr9 45560502 45560643 -78515529 + MIRc SINE MIR 11 160 -102 1 932 250 291 41 4 chr9 45561970 45562078 -78514094 + MIRc SINE MIR 80 197 -79 1 932 255 31 0 0 chr9 45563034 45563066 -78513106 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 932 203 352 107 0 chr9 45563239 45563361 -78512811 - MIRc SINE MIR -44 224 90 1 932 701 268 28 6 chr9 45563796 45563874 -78512298 + ID SINE ID 3 84 -140 1 932 287 297 103 51 chr9 45563874 45563991 -78512181 + PB1 SINE Alu 3 125 -2 1 932 309 228 24 24 chr9 45563994 45564207 -78511965 + GA-rich Low_complexity Low_complexity 1 213 0 1 932 434 257 63 44 chr9 45564442 45564601 -78511571 + MER5A1 DNA MER1_type 1 162 -4 1 932 437 243 373 0 chr9 45564789 45565035 -78511137 - L1MB3 LINE L1 -2 6178 5841 1 932 240 111 0 0 chr9 45565070 45565115 -78511057 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 1 932 798 171 4 0 chr9 45565125 45565388 -78510784 + (TTGG)n Simple_repeat Simple_repeat 1 264 0 1 932 444 233 137 15 chr9 45565388 45565519 -78510653 - B1F2 SINE Alu -2 147 1 1 932 412 182 137 29 chr9 45565550 45565652 -78510520 - PB1D10 SINE Alu -1 116 4 1 932 21 36 0 0 chr9 45565693 45565721 -78510451 + AT_rich Low_complexity Low_complexity 1 28 0 1 932 264 30 0 0 chr9 45565721 45565754 -78510418 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 932 687 300 6 6 chr9 45565770 45565931 -78510241 - RSINE1 SINE B4 -4 161 1 1 932 480 339 100 0 chr9 45565932 45566183 -78509989 - L1MB3 LINE L1 -339 5844 5569 1 932 680 241 14 7 chr9 45566248 45566394 -78509778 - B1F SINE Alu -2 147 1 1 932 410 252 101 61 chr9 45566491 45566639 -78509533 - B3 SINE B2 0 216 63 1 932 573 55 0 0 chr9 45566714 45566787 -78509385 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 932 704 228 0 0 chr9 45566790 45566917 -78509255 - RSINE1 SINE B4 -36 129 3 1 932 330 306 129 0 chr9 45567043 45567167 -78509005 + ID_B1 SINE B4 83 222 -2 1 932 548 186 8 0 chr9 45567167 45567285 -78508887 + GA-rich Low_complexity Low_complexity 1 119 0 1 932 911 305 93 14 chr9 45567320 45567526 -78508646 + MLT1J1 LTR MaLR 57 287 -157 1 932 2403 125 39 6 chr9 45567526 45567881 -78508291 - ORR1B2 LTR MaLR 0 367 1 1 932 911 305 93 14 chr9 45567881 45568027 -78508145 + MLT1J1 LTR MaLR 288 436 -8 1 932 193 388 0 0 chr9 45568340 45568425 -78507747 - L3 LINE CR1 -2 4487 4403 1 932 494 234 13 29 chr9 45568563 45568722 -78507450 - MTD LTR MaLR -14 407 254 1 932 553 301 20 111 chr9 45568730 45569293 -78506879 + RMER1B Other Other 53 683 -659 1 932 681 244 134 34 chr9 45569308 45569546 -78506626 + RMER1C Other Other 1063 1324 -18 1 932 639 330 15 0 chr9 45569594 45569794 -78506378 - MTD LTR MaLR -212 207 5 1 932 1334 76 12 0 chr9 45569853 45570025 -78506147 + B2_Mm1a SINE B2 5 178 -15 1 932 416 62 7 3 chr9 45570051 45570161 -78506011 + B2_Mm2 SINE B2 49 195 0 1 932 322 215 83 31 chr9 45570266 45570362 -78505810 + MLT1A1 LTR MaLR 305 405 -3 1 932 334 359 54 58 chr9 45570616 45570876 -78505296 + ORR1E LTR MaLR 94 352 -7 1 932 712 241 0 25 chr9 45571660 45571822 -78504350 - RSINE1 SINE B4 -5 160 3 1 932 220 279 103 0 chr9 45572785 45572853 -78503319 + RSINE1 SINE B4 55 129 -36 1 932 282 29 0 0 chr9 45572858 45572893 -78503279 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 932 352 294 66 0 chr9 45573040 45573176 -78502996 + MLT1A0 LTR MaLR 122 266 -99 1 932 563 301 66 134 chr9 45573225 45573380 -78502792 + MT2B LTR ERVL 1 198 -403 1 932 842 101 16 0 chr9 45573380 45573509 -78502663 - B1_Mus1 SINE Alu 0 148 18 1 932 563 301 66 134 chr9 45573509 45573696 -78502476 + MT2B LTR ERVL 199 439 -162 1 932 360 0 0 0 chr9 45573806 45573846 -78502326 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 932 180 0 0 0 chr9 45573846 45573865 -78502307 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 932 736 172 31 15 chr9 45573866 45573996 -78502176 - B1_Mur1 SINE Alu -16 133 2 1 932 237 65 0 0 chr9 45574011 45574042 -78502130 + (T)n Simple_repeat Simple_repeat 1 31 0 1 932 226 304 49 25 chr9 45574042 45574123 -78502049 - ID4_ SINE ID 0 83 1 1 932 220 281 122 44 chr9 45574238 45574384 -78501788 + MIRc SINE MIR 27 183 -93 1 932 199 314 47 38 chr9 45574819 45574925 -78501247 + MIRc SINE MIR 99 205 -63 1 932 220 316 52 37 chr9 45577858 45577994 -78498178 + MIRm SINE MIR 17 153 -123 1 932 3163 60 5 25 chr9 45577994 45578402 -78497770 + MTB LTR MaLR 1 400 0 1 932 212 327 86 73 chr9 45578402 45578451 -78497721 + MIRb SINE MIR 152 197 -71 1 932 342 0 0 0 chr9 45578451 45578489 -78497683 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 932 212 327 86 73 chr9 45578489 45578544 -78497628 + MIRb SINE MIR 198 262 -6 1 932 255 146 0 0 chr9 45579409 45579464 -78496708 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 1 932 3485 25 5 5 chr9 45580641 45581037 -78495135 + MTA_Mm LTR MaLR 1 396 0 1 932 909 286 61 116 chr9 45585570 45585966 -78490206 + MTE2b LTR MaLR 1 374 -5 1 932 315 345 99 0 chr9 45586091 45586248 -78489924 + MIRb SINE MIR 90 262 0 1 932 202 222 0 22 chr9 45587838 45587884 -78488288 + CT-rich Low_complexity Low_complexity 6 50 0 1 932 526 214 10 0 chr9 45588529 45588627 -78487545 - ID_B1 SINE B4 -12 212 114 1 932 201 282 89 13 chr9 45589137 45589216 -78486956 - MIR3 SINE MIR -12 196 112 1 932 720 141 0 0 chr9 45590071 45590192 -78485980 + (TCC)n Simple_repeat Simple_repeat 2 122 0 1 932 1081 124 214 5 chr9 45590764 45590951 -78485221 + URR1A DNA MER1_type 1 226 0 1 932 261 246 68 55 chr9 45592151 45592224 -78483948 - ID4 SINE ID -7 76 3 1 932 663 239 96 102 chr9 45594355 45594518 -78481654 + B3A SINE B2 2 166 -29 1 932 243 125 0 0 chr9 45594518 45594558 -78481614 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 932 423 239 96 102 chr9 45594558 45594571 -78481601 + B2_Mm2 SINE B2 167 177 -18 1 932 595 186 8 8 chr9 45594626 45594745 -78481427 + B3 SINE B2 92 210 -6 1 932 528 131 40 0 chr9 45594759 45594858 -78481314 + Lx2 LINE L1 6895 6997 0 1 932 207 0 0 0 chr9 45594861 45594884 -78481288 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1 932 359 89 18 0 chr9 45595049 45595105 -78481067 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 932 346 186 157 0 chr9 45597672 45597742 -78478430 - ID4_ SINE ID -1 82 2 1 932 480 18 0 0 chr9 45598915 45598972 -78477200 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 932 253 203 0 15 chr9 45599431 45599496 -78476676 + L1ME2z LINE L1 6368 6431 -13 1 932 202 51 24 49 chr9 45600249 45600290 -78475882 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 932 260 275 7 0 chr9 45601447 45601585 -78474587 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 932 192 200 0 0 chr9 45601767 45601807 -78474365 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 932 310 148 0 47 chr9 45602604 45602668 -78473504 - HAL1-3A_ME LINE L1 -823 2035 1975 1 932 378 107 0 0 chr9 45602668 45602724 -78473448 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 932 900 273 54 68 chr9 45602773 45602824 -78473348 - B4A SINE B4 0 292 253 1 932 423 0 0 0 chr9 45602824 45602871 -78473301 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 932 900 273 54 68 chr9 45602871 45603114 -78473058 - B4A SINE B4 -40 252 2 1 932 543 302 37 25 chr9 45603169 45603332 -78472840 - B3A SINE B2 -25 173 9 1 932 311 330 187 21 chr9 45603824 45604065 -78472107 - LTR16B1 LTR ERVL -185 295 15 2 932 456 19 0 0 chr9 45604626 45604679 -78471493 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 2 932 613 195 117 0 chr9 45604696 45604824 -78471348 + B1_Mur3 SINE Alu 2 144 -5 2 932 651 159 86 50 chr9 45605039 45605178 -78470994 + B1_Mur2 SINE Alu 5 148 -1 2 932 234 191 0 0 chr9 45605184 45605231 -78470941 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 932 207 100 0 0 chr9 45605237 45605267 -78470905 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 2 932 690 226 31 67 chr9 45605458 45605652 -78470520 - B3A SINE B2 -1 197 11 2 932 700 202 23 0 chr9 45607970 45608099 -78468073 + RSINE1 SINE B4 3 134 -31 2 932 982 125 14 7 chr9 45608140 45608285 -78467887 + B1_Mur3 SINE Alu 3 148 -1 2 932 252 86 0 0 chr9 45608313 45608348 -78467824 + (ATG)n Simple_repeat Simple_repeat 1 35 0 2 932 690 214 160 17 chr9 45608351 45608589 -78467583 + B4A SINE B4 1 272 -20 2 932 187 348 49 9 chr9 45609130 45609291 -78466881 + L2b LINE L2 3026 3194 -193 2 932 1809 222 41 27 chr9 45609656 45610068 -78466104 - MTD LTR MaLR -1 418 1 2 932 310 303 84 92 chr9 45610412 45610663 -78465509 + L1MB4 LINE L1 5868 6117 -54 2 932 206 213 0 0 chr9 45611068 45611115 -78465057 + C-rich Low_complexity Low_complexity 1 47 0 2 932 682 236 0 81 chr9 45612193 45612391 -78463781 + B3A SINE B2 1 182 -16 2 932 255 308 48 71 chr9 45612704 45612872 -78463300 - MIR SINE MIR -78 184 21 2 933 239 275 43 0 chr9 45616737 45616806 -78459366 + ID2 SINE ID 1 72 -11 2 933 249 33 0 0 chr9 45616815 45616845 -78459327 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 933 201 241 0 0 chr9 45617200 45617254 -78458918 + CT-rich Low_complexity Low_complexity 1 54 0 2 933 335 272 0 0 chr9 45617319 45617400 -78458772 - PB1D10 SINE Alu -36 81 1 2 933 192 200 0 0 chr9 45617813 45617858 -78458314 + CT-rich Low_complexity Low_complexity 2 46 0 2 933 1409 40 6 0 chr9 45618126 45618299 -78457873 - B2_Mm1a SINE B2 -19 174 1 2 933 242 271 53 15 chr9 45618321 45618452 -78457720 + L1MEd LINE L1 981 1116 -5020 2 933 180 0 0 0 chr9 45618513 45618533 -78457639 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2 933 525 161 0 31 chr9 45618587 45618683 -78457489 + B3 SINE B2 1 93 -123 2 933 699 242 62 10 chr9 45618758 45618950 -78457222 + B3 SINE B2 1 202 -14 2 933 524 131 0 0 chr9 45619011 45619110 -78457062 + L1_Mus4 LINE L1 6538 6636 0 2 933 282 289 61 88 chr9 45619184 45619332 -78456840 + ID_B1 SINE B4 79 222 -2 2 933 464 230 0 48 chr9 45619382 45619487 -78456685 - B1F2 SINE Alu -11 138 39 2 933 1138 306 89 88 chr9 45619541 45619879 -78456293 + L1MEd LINE L1 3496 3848 -2298 2 933 576 269 6 25 chr9 45619879 45620039 -78456133 + RSINE1 SINE B4 1 157 -8 2 933 1138 306 89 88 chr9 45620039 45620470 -78455702 + L1MEd LINE L1 3849 4253 -1893 2 933 228 67 0 0 chr9 45620470 45620500 -78455672 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 933 1138 306 89 88 chr9 45620500 45620906 -78455266 + L1MEd LINE L1 4254 4683 -1463 2 933 921 187 18 71 chr9 45620906 45621131 -78455041 + B3 SINE B2 1 213 -3 2 933 1138 306 89 88 chr9 45621131 45621208 -78454964 + L1MEd LINE L1 4684 4750 -1396 2 933 1097 171 14 19 chr9 45621279 45621493 -78454679 - B3 SINE B2 -3 213 1 2 933 267 236 0 0 chr9 45621639 45621694 -78454478 + ID4_ SINE ID 15 69 -14 2 933 345 24 0 0 chr9 45621696 45621738 -78454434 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 933 270 321 117 49 chr9 45621805 45621989 -78454183 + MTC LTR MaLR 8 206 -215 2 933 497 263 88 0 chr9 45621989 45622126 -78454046 + B1_Mur1 SINE Alu 1 149 0 2 933 217 37 71 36 chr9 45622126 45622182 -78453990 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 2 933 781 243 26 31 chr9 45622196 45622391 -78453781 + MTE2a LTR MaLR 178 371 -8 2 933 470 217 27 45 chr9 45622414 45622525 -78453647 + PB1D10 SINE Alu 8 116 -1 2 933 432 288 91 0 chr9 45622522 45622654 -78453518 + ID_B1 SINE B4 81 224 0 2 933 498 204 0 0 chr9 45622672 45622760 -78453412 + PB1D10 SINE Alu 19 106 -11 2 933 324 0 0 0 chr9 45622838 45622874 -78453298 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 933 1442 44 22 0 chr9 45622958 45623141 -78453031 - B2_Mm2 SINE B2 -7 188 2 2 933 332 317 55 27 chr9 45624009 45624155 -78452017 + RSINE1 SINE B4 16 165 0 2 933 687 65 0 0 chr9 45624172 45624265 -78451907 + (CACTA)n Simple_repeat Simple_repeat 1 93 0 2 933 1251 233 14 28 chr9 45624458 45624749 -78451423 - B4 SINE B4 0 292 6 2 933 195 129 0 0 chr9 45625007 45625038 -78451134 + (A)n Simple_repeat Simple_repeat 1 31 0 2 933 924 218 0 0 chr9 45625046 45625216 -78450956 + B3A SINE B2 2 171 -27 2 933 288 0 0 0 chr9 45625226 45625258 -78450914 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 933 2000 152 59 37 chr9 45625268 45625677 -78450495 - MTC LTR MaLR -2 419 2 2 933 201 152 0 0 chr9 45625681 45625714 -78450458 + A-rich Low_complexity Low_complexity 2 34 0 2 933 1092 204 5 19 chr9 45625720 45625935 -78450237 + B3 SINE B2 4 215 -1 2 933 291 114 0 0 chr9 45625953 45625997 -78450175 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 933 611 243 22 0 chr9 45626349 45626485 -78449687 + ID_B1 SINE B4 79 217 -7 2 933 376 258 22 0 chr9 45627398 45627487 -78448685 - PB1D10 SINE Alu -26 91 1 2 933 561 256 74 19 chr9 45627596 45627762 -78448410 + B3A SINE B2 3 167 -31 2 933 423 0 0 0 chr9 45627762 45627809 -78448363 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 933 414 279 29 97 chr9 45627809 45627848 -78448324 + B2_Mm2 SINE B2 159 194 -1 2 933 263 136 31 78 chr9 45627881 45627945 -78448227 + B1_Mus2 SINE Alu 87 147 0 2 933 248 230 7 175 chr9 45628330 45628467 -78447705 + MT2B2 LTR ERVL 154 267 -317 2 933 464 289 0 30 chr9 45628346 45628478 -78447694 + B1F1 SINE Alu 1 128 -21 2 933 239 352 103 8 chr9 45628662 45628788 -78447384 + B4 SINE B4 61 198 -94 2 933 481 231 37 9 chr9 45628688 45628797 -78447375 + B1F1 SINE Alu 7 118 -31 2 933 236 149 0 21 chr9 45628800 45628848 -78447324 + GA-rich Low_complexity Low_complexity 2 48 0 2 933 579 283 35 0 chr9 45628944 45629089 -78447083 + RSINE1 SINE B4 12 161 -4 2 933 377 211 0 40 chr9 45629687 45629771 -78446401 + B3 SINE B2 101 180 -36 2 933 275 270 81 81 chr9 45629771 45629920 -78446252 + B4A SINE B4 1 149 -143 2 933 333 215 0 15 chr9 45629864 45629930 -78446242 + B1F SINE Alu 10 74 -75 2 933 384 259 17 150 chr9 45629952 45630125 -78446047 + RSINE1 SINE B4 1 150 -15 2 933 423 190 15 108 chr9 45630517 45630647 -78445525 - PB1D9 SINE Alu -2 118 1 2 933 445 217 59 44 chr9 45630919 45631054 -78445118 - ID_B1 SINE B4 -1 223 87 2 933 508 170 61 26 chr9 45630939 45631054 -78445118 - B1F1 SINE Alu -25 124 6 2 933 257 246 59 103 chr9 45631054 45631069 -78445103 - MT2B LTR ERVL -315 256 157 2 933 632 325 32 19 chr9 45631154 45631370 -78444802 - MER58A DNA MER1_type -5 219 1 2 933 1055 168 61 5 chr9 45631452 45631650 -78444522 + B3 SINE B2 1 209 -7 2 933 601 196 0 9 chr9 45632088 45632196 -78443976 + B3 SINE B2 2 108 -108 2 933 235 280 141 23 chr9 45632196 45632216 -78443956 + B4A SINE B4 2 144 -148 2 933 663 48 0 0 chr9 45632218 45632301 -78443871 + (GAA)n Simple_repeat Simple_repeat 3 85 0 2 933 278 0 0 51 chr9 45632299 45632338 -78443834 + (TAG)n Simple_repeat Simple_repeat 2 38 0 2 933 654 259 69 199 chr9 45633547 45633732 -78442440 + MTD LTR MaLR 41 206 -213 2 933 759 171 7 46 chr9 45633732 45633885 -78442287 + B1_Mur3 SINE Alu 2 148 -1 2 933 654 259 69 199 chr9 45633885 45634132 -78442040 + MTD LTR MaLR 207 417 -2 2 933 330 263 52 21 chr9 45634412 45634509 -78441663 - L2b LINE L2 -253 3122 3023 2 933 429 225 24 48 chr9 45634676 45634802 -78441370 + B3A SINE B2 1 123 -75 2 933 544 261 47 47 chr9 45634788 45634937 -78441235 - B4 SINE B4 -137 155 7 2 933 343 179 0 0 chr9 45635029 45635085 -78441087 + ID4_ SINE ID 28 83 0 2 933 879 159 0 0 chr9 45635095 45635342 -78440830 + (TG)n Simple_repeat Simple_repeat 1 247 0 2 933 210 162 0 26 chr9 45635362 45635400 -78440772 + G-rich Low_complexity Low_complexity 2 38 0 2 933 213 311 122 9 chr9 45635478 45635585 -78440587 - MIRb SINE MIR -22 246 128 2 933 27 0 0 0 chr9 45636073 45636100 -78440072 + GC_rich Low_complexity Low_complexity 1 27 0 2 933 754 201 8 0 chr9 45637209 45637343 -78438829 + B1_Mur1 SINE Alu 10 144 -5 2 933 761 258 22 6 chr9 45637344 45637523 -78438649 - B3 SINE B2 -27 189 8 2 933 783 221 4 78 chr9 45637845 45638076 -78438096 + B3 SINE B2 1 214 -2 2 933 586 225 0 23 chr9 45638129 45638261 -78437911 + B1_Mur4 SINE Alu 22 150 0 2 933 588 29 0 0 chr9 45638264 45638334 -78437838 + (GGA)n Simple_repeat Simple_repeat 3 72 0 2 933 369 263 95 0 chr9 45638336 45638431 -78437741 + B1_Mur2 SINE Alu 44 147 -2 2 933 1143 62 0 0 chr9 45638432 45638578 -78437594 + B1_Mus1 SINE Alu 1 146 -2 2 933 1404 42 0 59 chr9 45638598 45638757 -78437415 + B2_Mm1a SINE B2 2 160 -33 2 933 414 0 0 0 chr9 45638757 45638803 -78437369 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 933 1404 42 0 59 chr9 45638803 45638847 -78437325 + B2_Mm1a SINE B2 161 193 0 2 933 395 266 58 77 chr9 45638852 45638866 -78437306 + B4A SINE B4 78 225 -63 2 933 895 117 7 0 chr9 45638866 45639003 -78437169 + B1_Mus2 SINE Alu 9 146 -1 3 933 466 273 76 42 chr9 45639387 45639571 -78436601 - B3A SINE B2 0 216 26 3 933 393 263 3 44 chr9 45639590 45639709 -78436463 - B1_Mur1 SINE Alu -3 146 8 3 933 211 224 0 0 chr9 45639764 45639813 -78436359 + T-rich Low_complexity Low_complexity 1 49 0 3 933 465 211 101 42 chr9 45639916 45640035 -78436137 + B1_Mus1 SINE Alu 2 127 -21 3 933 200 157 13 79 chr9 45640186 45640237 -78435935 + T-rich Low_complexity Low_complexity 23 71 0 3 933 844 103 88 0 chr9 45640237 45640373 -78435799 - B1_Mur4 SINE Alu 0 150 3 3 933 200 157 13 79 chr9 45640373 45640387 -78435785 + T-rich Low_complexity Low_complexity 11 22 0 3 933 1283 51 51 0 chr9 45640387 45640565 -78435607 - B2_Mm2 SINE B2 -6 189 3 3 933 794 216 19 72 chr9 45640579 45640788 -78435384 - B3A SINE B2 0 198 1 3 933 361 245 128 0 chr9 45640791 45640885 -78435287 - PB1D10 SINE Alu -3 114 9 3 933 360 369 42 11 chr9 45640932 45641121 -78435051 - L1M5 LINE L1 -777 5369 5175 3 933 208 339 0 0 chr9 45641161 45641223 -78434949 - MIRb SINE MIR -16 252 191 3 933 586 154 97 97 chr9 45641238 45641382 -78434790 - B1F2 SINE Alu -1 148 5 3 933 2141 105 9 12 chr9 45641425 45641753 -78434419 - ORR1A2 LTR MaLR 0 327 1 3 933 1775 240 265 25 chr9 45641833 45642475 -78433697 + RMER13A LTR ERVK 1 796 -64 3 933 335 383 79 20 chr9 45642645 45642699 -78433473 - L1M5 LINE L1 -1051 5095 5038 3 933 305 19 18 53 chr9 45642699 45642756 -78433416 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 3 933 1179 36 0 0 chr9 45642758 45642898 -78433274 - B1_Mm SINE Alu -6 141 2 3 933 335 383 79 20 chr9 45642898 45643093 -78433079 - L1M5 LINE L1 -1109 5037 4831 3 933 347 0 0 23 chr9 45643183 45643227 -78432945 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 3 933 420 256 62 8 chr9 45643227 45643357 -78432815 - B1F SINE Alu -12 137 1 3 933 297 273 0 0 chr9 45643361 45643427 -78432745 - ID_B1 SINE B4 -52 172 107 3 933 505 241 34 47 chr9 45643490 45643638 -78432534 + B1F1 SINE Alu 2 147 -2 3 933 251 256 25 25 chr9 45643700 45643780 -78432392 - ID4_ SINE ID -2 81 2 3 933 1148 41 0 14 chr9 45645380 45645528 -78430644 + B1_Mus1 SINE Alu 2 147 -1 3 933 546 208 128 23 chr9 45645745 45645878 -78430294 - B1_Mur3 SINE Alu 0 149 3 3 933 318 151 0 0 chr9 45645892 45645965 -78430207 + T-rich Low_complexity Low_complexity 1 73 0 3 933 1146 48 0 13 chr9 45645965 45646114 -78430058 - B1_Mus2 SINE Alu 0 147 1 3 933 250 314 0 14 chr9 45646312 45646383 -78429789 + B1F SINE Alu 36 105 -44 3 933 387 0 0 0 chr9 45646394 45646437 -78429735 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 3 933 410 323 52 89 chr9 45648729 45648977 -78427195 + MIRb SINE MIR 14 252 -10 3 933 360 266 11 11 chr9 45650407 45650502 -78425670 - PB1D10 SINE Alu -22 95 1 3 933 718 197 15 0 chr9 45650526 45650663 -78425509 - B1_Mur1 SINE Alu -10 139 1 3 933 198 143 0 0 chr9 45650703 45650738 -78425434 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 3 933 404 238 0 0 chr9 45650984 45651064 -78425108 + ID2 SINE ID 1 80 -3 3 933 180 0 0 0 chr9 45651081 45651101 -78425071 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 3 933 592 286 34 0 chr9 45651101 45651248 -78424924 - RSINE1 SINE B4 -11 154 3 3 933 430 213 12 146 chr9 45651343 45651508 -78424664 + ID_B1 SINE B4 82 224 0 3 933 187 370 37 0 chr9 45651800 45651881 -78424291 - L2b LINE L2 -79 3296 3213 3 933 794 199 0 0 chr9 45652331 45652467 -78423705 + B1_Mus1 SINE Alu 10 145 -3 3 933 680 0 12 0 chr9 45652524 45652604 -78423568 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 933 481 221 51 44 chr9 45652621 45652758 -78423414 - B1F SINE Alu -11 138 1 3 933 368 349 20 13 chr9 45652792 45652943 -78423229 - MIRb SINE MIR -103 165 14 3 933 254 138 16 65 chr9 45655282 45655344 -78420828 - MLT1H2 LTR MaLR -386 103 45 3 933 282 87 0 0 chr9 45656191 45656237 -78419935 + (TTG)n Simple_repeat Simple_repeat 2 47 0 3 933 685 92 0 10 chr9 45656237 45656336 -78419836 - B1_Mus2 SINE Alu -2 145 48 3 933 656 233 49 27 chr9 45656898 45657083 -78419089 + B3A SINE B2 1 189 -9 3 933 216 0 0 0 chr9 45657113 45657137 -78419035 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 933 187 388 74 21 chr9 45657146 45657388 -78418784 - L2 LINE L2 -682 2737 2483 3 933 217 300 168 26 chr9 45657536 45657762 -78418410 - L2 LINE L2 -1405 2014 1757 3 933 249 202 58 81 chr9 45659501 45659587 -78416585 + ORR1E LTR MaLR 116 199 -160 3 933 383 279 89 16 chr9 45659722 45659846 -78416326 + ID_B1 SINE B4 92 224 0 3 933 186 189 0 0 chr9 45659854 45659891 -78416281 + GA-rich Low_complexity Low_complexity 3 39 0 3 933 277 294 206 5 chr9 45659977 45660194 -78415978 - LTR31 LTR ERV1 -200 419 160 3 933 221 294 0 0 chr9 45661397 45661448 -78414724 + PB1D7 SINE Alu 1 51 -69 3 933 761 242 107 0 chr9 45661484 45661699 -78414473 + B4A SINE B4 1 238 -54 3 933 806 286 40 18 chr9 45663028 45663252 -78412920 + B4 SINE B4 1 229 -63 3 933 800 214 115 0 chr9 45663257 45663439 -78412733 + B3 SINE B2 4 206 -10 3 933 883 161 0 0 chr9 45663449 45663598 -78412574 - B1_Mur4 SINE Alu 0 150 2 3 933 242 260 176 37 chr9 45663634 45663770 -78412402 + RSINE1 SINE B4 3 157 -8 3 933 438 53 0 0 chr9 45663846 45663903 -78412269 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 933 1250 87 12 0 chr9 45664554 45664727 -78411445 + B2_Mm2 SINE B2 2 176 -19 3 933 332 289 24 0 chr9 45664754 45664837 -78411335 - B1F1 SINE Alu -29 120 36 3 933 214 305 166 53 chr9 45665544 45665731 -78410441 + MIRb SINE MIR 28 235 -33 3 933 414 223 211 16 chr9 45665797 45665920 -78410252 - RSINE1 SINE B4 -17 148 2 3 933 634 258 109 33 chr9 45665921 45666105 -78410067 - ID_B1 SINE B4 0 224 27 3 933 629 315 30 0 chr9 45666226 45666429 -78409743 - MIR SINE MIR -10 252 44 3 933 479 198 17 35 chr9 45666697 45666812 -78409360 - PB1D10 SINE Alu 0 117 5 3 933 215 161 18 0 chr9 45670831 45670887 -78405285 + CT-rich Low_complexity Low_complexity 4 60 0 3 933 501 202 8 0 chr9 45670888 45670999 -78405173 - B1F2 SINE Alu 0 120 6 3 933 603 0 0 0 chr9 45671014 45671081 -78405091 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 933 417 262 29 19 chr9 45671118 45671223 -78404949 - PB1D10 SINE Alu -11 106 1 3 933 1161 68 0 7 chr9 45673171 45673319 -78402853 + B1_Mm SINE Alu 1 147 0 3 933 687 243 109 11 chr9 45673561 45673744 -78402428 + ID_B1 SINE B4 2 202 -22 3 933 1162 55 0 27 chr9 45673837 45673986 -78402186 + B1_Mm SINE Alu 3 147 0 3 933 258 170 0 0 chr9 45674102 45674142 -78402030 + T-rich Low_complexity Low_complexity 14 53 0 3 933 1223 48 0 0 chr9 45674142 45674288 -78401884 - B1_Mm SINE Alu 0 147 2 3 933 258 170 0 0 chr9 45674288 45674300 -78401872 + T-rich Low_complexity Low_complexity 2 13 0 3 933 635 198 24 32 chr9 45675204 45675329 -78400843 + RSINE1 SINE B4 2 125 -40 3 933 218 32 32 0 chr9 45675329 45675360 -78400812 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 933 579 66 0 0 chr9 45675373 45675449 -78400723 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 3 933 904 270 82 35 chr9 45676267 45676482 -78399690 + B4A SINE B4 9 233 -59 3 933 497 238 106 8 chr9 45676482 45676605 -78399567 + B1_Mur2 SINE Alu 2 136 -13 3 933 333 0 0 0 chr9 45676605 45676642 -78399530 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 3 933 306 312 143 97 chr9 45676642 45676721 -78399451 + B4 SINE B4 214 292 0 3 933 201 259 19 0 chr9 45676731 45676785 -78399387 + (CATA)n Simple_repeat Simple_repeat 4 58 0 3 933 577 143 32 30 chr9 45676806 45676929 -78399243 + B1_Mur4 SINE Alu 6 115 -2 3 933 288 0 0 0 chr9 45676942 45676974 -78399198 + (T)n Simple_repeat Simple_repeat 1 32 0 3 933 1063 52 73 0 chr9 45677062 45677198 -78398974 + B1_Mus1 SINE Alu 3 148 0 3 933 593 203 62 48 chr9 45677700 45677719 -78398453 - B1_Mus1 SINE Alu -1 147 128 3 933 423 0 0 0 chr9 45677719 45677766 -78398406 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 933 649 192 0 40 chr9 45677766 45677891 -78398281 - B1_Mur4 SINE Alu -30 120 1 3 933 516 58 0 0 chr9 45678197 45678266 -78397906 + L1_Mus2 LINE L1 6498 6566 0 3 933 192 40 0 0 chr9 45678269 45678294 -78397878 + (A)n Simple_repeat Simple_repeat 1 25 0 3 933 650 288 30 40 chr9 45678650 45678849 -78397323 + B3A SINE B2 2 198 0 3 933 401 290 9 0 chr9 45679187 45679294 -78396878 - PB1D10 SINE Alu -9 108 1 3 933 465 19 0 0 chr9 45679724 45679778 -78396394 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 933 565 232 71 0 chr9 45680290 45680402 -78395770 + PB1D7 SINE Alu 1 120 0 3 933 479 306 0 16 chr9 45680639 45680765 -78395407 + B1F SINE Alu 25 148 -1 3 933 511 233 79 50 chr9 45681254 45681394 -78394778 - B1_Mur2 SINE Alu 0 149 6 3 933 1777 88 8 15 chr9 45681526 45681791 -78394381 + ORR1A2 LTR MaLR 23 285 -42 3 933 1682 151 104 6 chr9 45681790 45682117 -78394055 + RLTR17 LTR ERVK 264 622 -70 3 933 393 301 105 9 chr9 45682201 45682315 -78393857 - B1F2 SINE Alu -13 136 12 3 933 215 209 15 0 chr9 45682334 45682383 -78393789 + (TATG)n Simple_repeat Simple_repeat 4 53 0 4 933 1102 62 20 27 chr9 45682383 45682519 -78393653 + B1_Mus1 SINE Alu 1 139 -9 4 933 567 0 0 0 chr9 45682519 45682582 -78393590 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 4 933 1102 62 20 27 chr9 45682582 45682594 -78393578 + B1_Mus1 SINE Alu 140 148 0 4 933 215 209 15 0 chr9 45682594 45682611 -78393561 + (TATG)n Simple_repeat Simple_repeat 3 19 0 4 933 2161 192 23 19 chr9 45683611 45683945 -78392227 + Lx9 LINE L1 7140 7480 -164 4 933 210 37 0 0 chr9 45683945 45683972 -78392200 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 4 933 2161 192 23 19 chr9 45683972 45684115 -78392057 + Lx9 LINE L1 7481 7618 -26 4 933 309 109 0 0 chr9 45684115 45684161 -78392011 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 4 933 358 78 0 0 chr9 45684437 45684488 -78391684 + ORR1A1 LTR MaLR 296 346 0 4 933 348 219 0 0 chr9 45684541 45684614 -78391558 - B3 SINE B2 -6 210 138 4 933 1568 47 0 16 chr9 45685026 45685220 -78390952 + B2_Mm2 SINE B2 2 192 -3 4 933 576 257 27 7 chr9 45685560 45685709 -78390463 + RSINE1 SINE B4 3 154 -11 4 933 1581 163 247 9 chr9 45685709 45686049 -78390123 - MTC LTR MaLR 0 421 1 4 933 30 45 0 0 chr9 45686056 45686100 -78390072 + AT_rich Low_complexity Low_complexity 1 44 0 4 933 604 311 28 11 chr9 45686127 45686306 -78389866 + B3 SINE B2 35 216 0 4 933 661 282 47 0 chr9 45686441 45686590 -78389582 + RSINE1 SINE B4 10 165 0 4 933 365 259 70 18 chr9 45686691 45686805 -78389367 - PB1D7 SINE Alu 0 120 1 4 933 789 105 261 7 chr9 45686968 45687121 -78389051 - B2_Mm2 SINE B2 -2 193 2 4 933 25 51 0 0 chr9 45687153 45687192 -78388980 + AT_rich Low_complexity Low_complexity 1 39 0 4 933 509 301 7 7 chr9 45687336 45687483 -78388689 + B1F SINE Alu 1 147 -2 4 933 264 300 0 36 chr9 45687537 45687620 -78388552 - ID4_ SINE ID -2 81 2 4 933 587 94 91 30 chr9 45687633 45687732 -78388440 - U6 snRNA snRNA -1 106 2 4 933 467 252 79 36 chr9 45687758 45687898 -78388274 - B1F2 SINE Alu -1 148 3 4 933 692 253 113 0 chr9 45687903 45688097 -78388075 - B3 SINE B2 0 216 1 4 933 480 301 27 40 chr9 45688173 45688322 -78387850 + B1F SINE Alu 1 147 -2 4 933 287 297 179 43 chr9 45688331 45688588 -78387584 + B4A SINE B4 1 292 0 4 933 291 247 45 0 chr9 45688620 45688709 -78387463 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 933 1157 200 19 9 chr9 45688753 45688965 -78387207 + B3 SINE B2 2 215 -1 4 933 23 0 0 0 chr9 45688971 45688994 -78387178 + AT_rich Low_complexity Low_complexity 1 23 0 4 933 739 184 164 17 chr9 45689116 45689293 -78386879 - B3 SINE B2 -13 203 1 4 933 329 371 60 14 chr9 45689416 45689632 -78386540 + MIR SINE MIR 25 250 -12 4 933 563 240 136 0 chr9 45689698 45689823 -78386349 + B1_Mur2 SINE Alu 1 142 -7 4 933 406 265 22 50 chr9 45690120 45690259 -78385913 - ID_B1 SINE B4 -9 215 81 4 933 180 176 0 0 chr9 45690654 45690688 -78385484 + GA-rich Low_complexity Low_complexity 3 36 0 4 933 1096 69 21 0 chr9 45690711 45690855 -78385317 + B1_Mus2 SINE Alu 1 147 0 4 933 490 264 174 0 chr9 45691101 45691268 -78384904 - B3A SINE B2 0 198 3 4 933 570 264 38 6 chr9 45691580 45691740 -78384432 - B4A SINE B4 -13 279 115 4 933 270 0 0 0 chr9 45691775 45691805 -78384367 + (T)n Simple_repeat Simple_repeat 1 30 0 4 933 332 195 143 0 chr9 45691811 45691888 -78384284 - B4A SINE B4 -203 89 2 4 933 918 228 46 33 chr9 45691888 45692117 -78384055 - B4A SINE B4 -59 233 2 4 933 352 324 73 6 chr9 45692203 45692380 -78383792 + ID_B1 SINE B4 1 189 -35 4 933 458 122 134 0 chr9 45692304 45692386 -78383786 + B1_Mm SINE Alu 23 115 -32 4 933 536 219 33 8 chr9 45692376 45692519 -78383653 + B4 SINE B4 86 232 -60 4 933 441 0 0 0 chr9 45692542 45692591 -78383581 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 933 216 0 0 0 chr9 45692591 45692614 -78383558 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 933 594 226 30 0 chr9 45692854 45692987 -78383185 + B1F2 SINE Alu 6 142 -7 4 933 285 191 29 14 chr9 45693061 45693130 -78383042 + B1F SINE Alu 80 149 0 4 933 274 318 98 67 chr9 45693245 45693435 -78382737 + Charlie1 DNA MER1_type 2256 2458 -323 4 933 589 120 265 0 chr9 45693435 45693552 -78382620 + B1_Mus1 SINE Alu 1 148 0 4 933 274 318 98 67 chr9 45693552 45693711 -78382461 + Charlie1 DNA MER1_type 2459 2634 -147 4 933 897 47 148 0 chr9 45693711 45693839 -78382333 + B1_Mus2 SINE Alu 1 147 0 4 933 274 318 98 67 chr9 45693839 45693967 -78382205 + Charlie1 DNA MER1_type 2635 2749 -32 4 933 246 228 228 0 chr9 45693971 45693993 -78382179 + PB1D10 SINE Alu 5 117 0 4 933 295 257 29 0 chr9 45693993 45694063 -78382109 + ID_B1 SINE B4 151 222 -2 4 933 556 128 0 0 chr9 45694545 45694631 -78381541 + B2_Mm2 SINE B2 2 87 -108 4 933 285 261 180 7 chr9 45695060 45695199 -78380973 + L1M4 LINE L1 2128 2290 -3856 4 933 367 289 35 9 chr9 45695269 45695384 -78380788 + B4 SINE B4 106 223 -69 4 933 315 287 212 20 chr9 45695409 45695555 -78380617 + B3A SINE B2 1 174 -24 4 933 1071 200 4 83 chr9 45695729 45695958 -78380214 - B3 SINE B2 -5 211 1 4 933 230 83 0 59 chr9 45695969 45696020 -78380152 + (T)n Simple_repeat Simple_repeat 1 48 0 4 933 692 85 38 0 chr9 45696020 45696126 -78380046 - PB1D9 SINE Alu 0 120 11 4 933 309 198 50 90 chr9 45696041 45696141 -78380031 - MT2B LTR ERVL -351 250 155 4 933 220 350 74 46 chr9 45697051 45697159 -78379013 + ID_B1 SINE B4 80 190 -34 4 933 243 315 21 11 chr9 45697166 45697259 -78378913 + PB1D10 SINE Alu 23 116 -1 4 933 1195 109 12 2 chr9 45697351 45697544 -78378628 + B2_Mm2 SINE B2 1 210 -6 4 933 543 16 0 0 chr9 45698421 45698485 -78377687 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 933 495 45 0 0 chr9 45698485 45698550 -78377622 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 933 325 230 14 0 chr9 45699141 45699215 -78376957 - ID4 SINE ID -6 77 3 4 933 416 286 28 57 chr9 45699244 45699359 -78376813 - ID_B1 SINE B4 -8 216 99 4 933 2896 158 16 72 chr9 45699359 45699494 -78376678 + RLTR12B LTR ERVK 1 100 -428 4 933 1209 61 0 0 chr9 45699494 45699641 -78376531 - B1_Mm SINE Alu 0 147 1 4 933 2896 158 16 72 chr9 45699641 45700064 -78376108 + RLTR12B LTR ERVK 101 528 0 4 933 416 286 28 57 chr9 45700064 45700089 -78376083 - ID_B1 SINE B4 -126 98 80 4 933 303 255 20 30 chr9 45700097 45700198 -78375974 - B1F SINE Alu -9 140 41 4 933 1106 111 0 6 chr9 45700306 45700460 -78375712 + B2_Mm2 SINE B2 2 155 -40 4 933 249 33 0 0 chr9 45700460 45700490 -78375682 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 933 1106 111 0 6 chr9 45700490 45700507 -78375665 + B2_Mm2 SINE B2 156 172 -23 4 933 1193 148 34 29 chr9 45700629 45700837 -78375335 + B3 SINE B2 1 209 -7 4 933 1034 232 62 14 chr9 45700856 45701131 -78375041 + B4 SINE B4 1 288 -4 4 933 384 331 53 0 chr9 45701172 45701305 -78374867 + L3 LINE CR1 4298 4437 -52 4 933 1208 196 0 20 chr9 45701381 45701593 -78374579 + MTC LTR MaLR 1 208 -213 4 933 1142 41 21 0 chr9 45701593 45701738 -78374434 + B1_Mus1 SINE Alu 1 148 0 4 933 1208 196 0 20 chr9 45701738 45701770 -78374402 + MTC LTR MaLR 209 240 -181 4 933 820 162 0 7 chr9 45701782 45701919 -78374253 + B1_Mur4 SINE Alu 15 150 0 4 933 909 128 19 19 chr9 45701946 45702105 -78374067 + MTC LTR MaLR 263 421 0 4 933 1160 55 0 7 chr9 45702368 45702515 -78373657 - B1_Mus1 SINE Alu 0 148 3 4 933 373 232 63 0 chr9 45702564 45702659 -78373513 - ID_B1 SINE B4 -11 213 113 4 933 672 229 5 82 chr9 45703151 45703346 -78372826 - B3A SINE B2 -16 182 3 4 933 1440 90 26 0 chr9 45703476 45703665 -78372507 - B2_Mm2 SINE B2 -1 194 1 4 933 243 103 0 0 chr9 45703731 45703770 -78372402 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 933 362 287 35 85 chr9 45703810 45703951 -78372221 - B1_Mur1 SINE Alu -1 148 15 4 933 506 164 27 3 chr9 45704023 45704147 -78372025 - ID4 SINE ID -16 136 5 4 933 778 283 24 5 chr9 45704374 45704587 -78371585 - ID_B1 SINE B4 -5 219 3 4 933 486 251 116 16 chr9 45704603 45704793 -78371379 - MER3 DNA MER1_type 0 209 1 4 933 687 214 8 0 chr9 45704882 45705013 -78371159 - ID_B1 SINE B4 -7 217 86 4 933 703 199 36 7 chr9 45705050 45705187 -78370985 + B1_Mur1 SINE Alu 2 142 -7 4 933 27 29 0 0 chr9 45705187 45705221 -78370951 + AT_rich Low_complexity Low_complexity 1 34 0 4 933 725 151 315 0 chr9 45705229 45705375 -78370797 + B2_Mm1t SINE B2 2 193 0 4 933 1460 65 0 5 chr9 45705389 45705574 -78370598 + B2_Mm2 SINE B2 1 184 -11 4 933 216 0 0 0 chr9 45705574 45705598 -78370574 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 933 561 271 2 20 chr9 45705711 45705860 -78370312 + B1_Mur1 SINE Alu 2 149 0 4 933 509 216 20 0 chr9 45705873 45705975 -78370197 + ID_B1 SINE B4 110 213 -11 4 933 230 208 129 50 chr9 45706012 45706113 -78370059 + PB1D7 SINE Alu 11 119 -1 4 933 890 163 7 0 chr9 45706923 45707070 -78369102 + B1_Mus1 SINE Alu 1 148 0 4 933 1125 76 14 0 chr9 45707081 45707225 -78368947 + B1_Mus2 SINE Alu 2 147 0 4 933 207 0 0 0 chr9 45707241 45707264 -78368908 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 933 1178 74 0 0 chr9 45707270 45707418 -78368754 + B1_Mus1 SINE Alu 1 148 0 4 933 738 34 0 0 chr9 45707421 45707510 -78368662 + (GGAGA)n Simple_repeat Simple_repeat 5 93 0 4 933 228 250 0 0 chr9 45707510 45707574 -78368598 + A-rich Low_complexity Low_complexity 1 64 0 4 933 306 0 0 0 chr9 45708345 45708379 -78367793 + (A)n Simple_repeat Simple_repeat 1 34 0 5 933 228 315 0 0 chr9 45708382 45708455 -78367717 + ID4 SINE ID 2 74 -9 5 933 282 152 220 0 chr9 45708455 45708513 -78367659 - ID4 SINE ID -8 75 4 5 933 583 168 103 0 chr9 45708791 45708898 -78367274 - PB1D9 SINE Alu -1 119 2 5 933 1085 95 0 13 chr9 45708928 45709077 -78367095 - B1_Mus1 SINE Alu 0 148 2 5 933 234 325 0 24 chr9 45709118 45709203 -78366969 + B4 SINE B4 5 87 -205 5 933 288 0 0 0 chr9 45709223 45709255 -78366917 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 933 484 244 14 51 chr9 45709381 45709519 -78366653 - B1F SINE Alu 0 149 17 5 933 207 0 0 0 chr9 45709752 45709775 -78366397 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 5 933 673 257 0 26 chr9 45709775 45709916 -78366256 - B1_Mur1 SINE Alu -10 139 2 5 933 798 198 233 0 chr9 45710016 45710188 -78365984 + B3 SINE B2 1 212 -4 5 933 970 127 0 27 chr9 45710192 45710331 -78365841 + B1_Mur3 SINE Alu 1 137 -12 5 933 187 31 30 30 chr9 45710331 45710364 -78365808 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 5 933 291 114 0 0 chr9 45710549 45710593 -78365579 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 5 933 859 147 7 0 chr9 45710594 45710730 -78365442 - B1_Mus1 SINE Alu -11 137 1 5 933 248 268 14 0 chr9 45710748 45710819 -78365353 - RMER15 LTR ERVL -105 470 399 5 933 461 314 22 0 chr9 45711190 45711327 -78364845 - ID_B1 SINE B4 0 224 85 5 933 537 267 77 0 chr9 45711362 45711540 -78364632 + MIRb SINE MIR 29 225 -43 5 933 380 138 0 0 chr9 45711693 45711751 -78364421 + ID_B1 SINE B4 160 217 -7 5 933 295 100 58 39 chr9 45711705 45711757 -78364415 + PB1D7 SINE Alu 65 117 -3 5 933 375 311 67 13 chr9 45711775 45711925 -78364247 + RSINE1 SINE B4 5 162 -3 5 933 677 197 0 0 chr9 45711933 45712050 -78364122 + B1_Mur1 SINE Alu 33 149 0 5 933 321 322 32 16 chr9 45712240 45712363 -78363809 + RSINE1 SINE B4 12 136 -29 5 933 631 225 28 28 chr9 45712432 45712574 -78363598 + B1_Mur1 SINE Alu 8 149 0 5 933 380 270 11 27 chr9 45714218 45714401 -78361771 + C-rich Low_complexity Low_complexity 1 180 0 5 933 180 176 0 0 chr9 45715079 45715113 -78361059 + (CAG)n Simple_repeat Simple_repeat 3 36 0 5 933 201 154 0 0 chr9 45715559 45715598 -78360574 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 933 489 153 10 30 chr9 45715886 45715987 -78360185 + B1_Mur4 SINE Alu 1 99 -51 5 933 716 161 69 49 chr9 45716812 45716956 -78359216 + B1_Mur2 SINE Alu 1 147 -2 5 933 219 69 0 0 chr9 45716956 45716985 -78359187 + (GGA)n Simple_repeat Simple_repeat 1 29 0 5 933 418 322 98 0 chr9 45718002 45718185 -78357987 + MIR SINE MIR 33 233 -29 5 933 401 322 0 0 chr9 45720242 45720360 -78355812 + ID_B1 SINE B4 107 224 0 5 933 858 171 21 0 chr9 45720372 45720512 -78355660 + B1_Mur4 SINE Alu 4 146 -4 5 933 288 260 50 38 chr9 45720582 45720662 -78355510 + ID4_ SINE ID 1 81 -2 5 933 803 285 65 19 chr9 45720596 45720857 -78355315 + B4 SINE B4 20 292 0 5 933 641 179 89 0 chr9 45721716 45721839 -78354333 + B1_Mm SINE Alu 2 135 -12 5 933 813 258 39 5 chr9 45721866 45722069 -78354103 + B3 SINE B2 1 210 -6 5 933 25 0 0 0 chr9 45722070 45722095 -78354077 + AT_rich Low_complexity Low_complexity 1 25 0 5 933 829 167 236 0 chr9 45722813 45722987 -78353185 - B3 SINE B2 0 216 2 5 933 487 280 22 15 chr9 45724229 45724363 -78351809 - B1F SINE Alu -9 140 6 5 933 390 181 48 0 chr9 45724391 45724474 -78351698 - ID_B1 SINE B4 -6 218 132 5 933 1048 103 0 0 chr9 45724499 45724645 -78351527 - B1_Mus1 SINE Alu -1 147 2 5 933 1195 54 0 0 chr9 45724998 45725146 -78351026 + B1_Mus1 SINE Alu 1 148 0 5 933 210 71 0 0 chr9 45725146 45725174 -78350998 + (A)n Simple_repeat Simple_repeat 1 28 0 5 933 189 0 0 0 chr9 45727801 45727822 -78348350 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 933 299 212 37 24 chr9 45728638 45728720 -78347452 - ID4_ SINE ID 0 83 1 5 933 501 272 52 0 chr9 45729734 45729870 -78346302 + B1F2 SINE Alu 1 143 -6 5 933 661 11 11 33 chr9 45730037 45730128 -78346044 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 933 1141 55 0 7 chr9 45730133 45730279 -78345893 - B1_Mm SINE Alu 0 147 3 5 933 288 0 0 0 chr9 45730279 45730311 -78345861 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 933 445 115 42 84 chr9 45730311 45730406 -78345766 - B1_Mur3 SINE Alu -9 140 50 5 933 195 129 0 0 chr9 45730789 45730820 -78345352 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 5 933 242 233 16 16 chr9 45730837 45730898 -78345274 - ID4_ SINE ID -19 64 4 5 933 1352 194 198 9 chr9 45731324 45731667 -78344505 - MTD LTR MaLR -8 411 4 5 933 758 197 14 7 chr9 45731784 45731932 -78344240 + B1F2 SINE Alu 1 149 0 5 933 324 127 0 0 chr9 45731932 45731987 -78344185 + (A)n Simple_repeat Simple_repeat 1 55 0 5 933 279 176 151 1 chr9 45732086 45732181 -78343991 + PB1D9 SINE Alu 8 120 0 5 933 1013 147 15 40 chr9 45732275 45732445 -78343727 + B2_Mm2 SINE B2 2 170 -25 5 933 1341 70 11 16 chr9 45732445 45732633 -78343539 - B2_Mm2 SINE B2 -8 187 1 5 933 1013 147 15 40 chr9 45732633 45732660 -78343512 + B2_Mm2 SINE B2 171 194 -1 5 933 462 179 204 160 chr9 45732672 45732711 -78343461 + B3 SINE B2 2 40 -176 5 933 1115 61 0 13 chr9 45732711 45732860 -78343312 + B1_Mus2 SINE Alu 1 147 0 5 933 462 179 204 160 chr9 45732860 45733026 -78343146 + B3 SINE B2 41 216 0 5 933 351 269 132 37 chr9 45733174 45733336 -78342836 - L1MD2 LINE L1 -17 6342 6164 5 933 330 26 0 0 chr9 45733336 45733375 -78342797 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 933 351 269 132 37 chr9 45733375 45733401 -78342771 - L1MD2 LINE L1 -196 6163 6136 5 933 416 215 72 46 chr9 45734343 45734459 -78341713 + PB1D10 SINE Alu 9 118 -29 5 933 198 311 88 24 chr9 45735155 45735280 -78340892 - MIRc SINE MIR -45 223 91 5 933 468 0 0 0 chr9 45736280 45736332 -78339840 + (GGTTG)n Simple_repeat Simple_repeat 4 55 0 5 933 1138 51 0 0 chr9 45736359 45736497 -78339675 + B1_Mm SINE Alu 1 138 -9 5 933 212 0 36 0 chr9 45736497 45736525 -78339647 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 933 195 100 0 0 chr9 45738044 45738074 -78338098 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 933 552 246 224 0 chr9 45740050 45740233 -78335939 - MER58A DNA MER1_type 0 224 1 5 933 557 199 45 8 chr9 45740398 45740530 -78335642 - B1_Mur4 SINE Alu -13 137 1 5 933 378 0 0 0 chr9 45741499 45741541 -78334631 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 933 1023 97 0 0 chr9 45742016 45742161 -78334011 + B1_Mus1 SINE Alu 3 147 -1 5 933 206 118 0 0 chr9 45742544 45742578 -78333594 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 933 1129 68 0 0 chr9 45743143 45743290 -78332882 + B1_Mus1 SINE Alu 1 147 -1 5 933 594 140 0 0 chr9 45743311 45743411 -78332761 + (GA)n Simple_repeat Simple_repeat 2 101 0 5 934 298 282 221 0 chr9 45744438 45744569 -78331603 - MIRb SINE MIR -38 230 71 5 934 296 312 90 48 chr9 45744836 45744981 -78331191 + RSINE1 SINE B4 2 152 -13 5 934 235 122 0 39 chr9 45745058 45745109 -78331063 + GA-rich Low_complexity Low_complexity 6 54 0 5 934 958 60 0 8 chr9 45745383 45745517 -78330655 + B1_Mus2 SINE Alu 14 146 -1 5 934 244 241 32 60 chr9 45748491 45748676 -78327496 + (CTCG)n Simple_repeat Simple_repeat 1 180 0 5 934 226 286 32 0 chr9 45748743 45748806 -78327366 + tRNA-Ala-GCY_ tRNA tRNA 1 65 -10 5 934 670 178 0 88 chr9 45748922 45749082 -78327090 - B1_Mus2 SINE Alu 0 147 2 5 934 214 258 0 16 chr9 45750327 45750390 -78325782 + GA-rich Low_complexity Low_complexity 2 63 0 5 934 965 192 13 33 chr9 45751874 45752359 -78323813 + (CAGGG)n Simple_repeat Simple_repeat 1 475 0 5 934 191 293 222 8 chr9 45753064 45753181 -78322991 - MIRb SINE MIR -110 158 17 5 934 183 42 0 0 chr9 45753712 45753736 -78322436 + (CAGGG)n Simple_repeat Simple_repeat 3 26 0 5 934 563 257 7 28 chr9 45755318 45755462 -78320710 + B1F SINE Alu 1 141 -8 5 934 1074 82 0 0 chr9 45756882 45757029 -78319143 + B1_Mus2 SINE Alu 1 147 0 5 934 717 194 119 10 chr9 45757051 45757086 -78319086 - B3 SINE B2 0 216 180 5 934 504 0 0 0 chr9 45757086 45757142 -78319030 + (TATG)n Simple_repeat Simple_repeat 4 59 0 5 934 717 194 119 10 chr9 45757142 45757299 -78318873 - B3 SINE B2 -37 179 5 5 934 432 298 61 8 chr9 45757320 45757452 -78318720 - ID_B1 SINE B4 -4 220 82 5 934 255 125 0 0 chr9 45758219 45758259 -78317913 + (GGA)n Simple_repeat Simple_repeat 3 42 0 5 934 328 250 0 0 chr9 45758376 45758448 -78317724 - ID2 SINE ID -3 80 9 5 934 1757 289 31 66 chr9 45758634 45759143 -78317029 + RCHARR1 DNA MER1_type 56 551 -423 5 934 1364 70 5 16 chr9 45759143 45759332 -78316840 + B2_Mm1a SINE B2 1 187 -6 5 934 1757 289 31 66 chr9 45759332 45759353 -78316819 + RCHARR1 DNA MER1_type 552 564 -410 5 934 453 229 19 9 chr9 45759353 45759459 -78316713 - U6 snRNA snRNA 0 107 1 5 934 1757 289 31 66 chr9 45759459 45759561 -78316611 + RCHARR1 DNA MER1_type 565 666 -308 5 934 25 0 0 0 chr9 45759649 45759674 -78316498 + AT_rich Low_complexity Low_complexity 1 25 0 5 934 676 203 50 7 chr9 45760527 45760666 -78315506 - B1_Mus2 SINE Alu -2 145 1 5 934 216 97 0 0 chr9 45763177 45763208 -78312964 + (CCCGG)n Simple_repeat Simple_repeat 5 35 0 5 934 407 290 28 42 chr9 45763525 45763669 -78312503 - ID_B1 SINE B4 0 224 83 6 934 278 264 79 79 chr9 45763946 45764086 -78312086 + L1M5 LINE L1 5548 5687 -437 6 934 366 254 116 61 chr9 45764296 45764443 -78311729 + RSINE1 SINE B4 11 165 0 6 934 25 0 0 0 chr9 45764448 45764473 -78311699 + AT_rich Low_complexity Low_complexity 1 25 0 6 934 261 0 0 0 chr9 45764473 45764502 -78311670 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 934 527 253 56 43 chr9 45764509 45764670 -78311502 + RSINE1 SINE B4 3 165 0 6 934 348 77 0 0 chr9 45764697 45764749 -78311423 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 934 2852 101 97 4 chr9 45764766 45765242 -78310930 - RLTR28 LTR ERVL -4 520 1 6 934 1259 86 16 11 chr9 45765334 45765523 -78310649 + B2_Mm2 SINE B2 2 191 -4 6 934 218 189 67 16 chr9 45765802 45765872 -78310300 + B1F SINE Alu 27 101 -16 6 934 285 212 18 88 chr9 45765960 45765998 -78310174 + ID_B1 SINE B4 119 222 0 6 934 578 27 0 0 chr9 45765998 45766072 -78310100 + B1_Mm SINE Alu 74 147 0 6 934 245 302 31 0 chr9 45766565 45766661 -78309511 + PB1D10 SINE Alu 2 100 -17 6 934 200 31 62 0 chr9 45766817 45766849 -78309323 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 934 539 285 0 7 chr9 45766882 45767020 -78309152 - B1F1 SINE Alu -12 137 1 6 934 237 216 292 11 chr9 45767357 45767446 -78308726 + PB1D10 SINE Alu 2 115 -2 6 934 1672 10 0 0 chr9 45767446 45767639 -78308533 + B2_Mm1a SINE B2 1 193 0 6 934 210 37 0 0 chr9 45767639 45767666 -78308506 + (A)n Simple_repeat Simple_repeat 1 27 0 6 934 1772 164 83 24 chr9 45767977 45768352 -78307820 + MTB_Mm LTR MaLR 3 399 -8 6 934 2253 148 16 5 chr9 45768360 45768746 -78307426 + MTB_Mm-int LTR MaLR 7 396 -1567 6 934 1489 115 4 8 chr9 45768741 45768978 -78307194 + MTB_Mm LTR MaLR 94 329 0 6 934 781 274 75 36 chr9 45769138 45769418 -78306754 - B4 SINE B4 0 292 2 6 934 226 409 20 81 chr9 45769461 45769610 -78306562 + ID_B1 SINE B4 33 172 -52 6 934 271 266 101 0 chr9 45769542 45769621 -78306551 + PB1D10 SINE Alu 22 108 -9 6 934 353 250 101 9 chr9 45769765 45769874 -78306298 + PB1 SINE Alu 7 125 -2 6 934 252 0 0 0 chr9 45770486 45770514 -78305658 + (T)n Simple_repeat Simple_repeat 1 28 0 6 934 1167 41 7 0 chr9 45770519 45770664 -78305508 - B1_Mus2 SINE Alu 0 147 2 6 934 304 304 141 0 chr9 45770766 45770901 -78305271 + RSINE1 SINE B4 4 157 -8 6 934 449 250 28 0 chr9 45771242 45771350 -78304822 + PB1D10 SINE Alu 1 111 -6 6 934 404 344 65 16 chr9 45771873 45772059 -78304113 + LTR86C LTR ERVL 216 410 -211 6 934 442 295 45 0 chr9 45772119 45772231 -78303941 + ID_B1 SINE B4 84 200 -24 6 934 370 321 92 0 chr9 45772231 45772249 -78303923 + B1F1 SINE Alu 3 144 -5 6 934 400 270 30 0 chr9 45773075 45773175 -78302997 + PB1D9 SINE Alu 2 104 -16 6 934 299 193 119 12 chr9 45773953 45774037 -78302135 + ID_B1 SINE B4 132 224 0 6 934 371 241 28 2 chr9 45774059 45774168 -78302004 + B1F2 SINE Alu 1 117 -3 6 934 303 204 9 147 chr9 45775280 45775389 -78300783 + MT2B LTR ERVL 172 265 -336 6 934 653 200 0 37 chr9 45775293 45775428 -78300744 + B1_Mur1 SINE Alu 17 146 -3 6 934 820 152 43 0 chr9 45775481 45775619 -78300553 + B1_Mm SINE Alu 4 147 0 6 934 327 213 16 0 chr9 45775749 45775810 -78300362 + ID4 SINE ID 19 80 -3 6 934 24 0 0 0 chr9 45775816 45775840 -78300332 + AT_rich Low_complexity Low_complexity 1 24 0 6 934 578 228 291 6 chr9 45777316 45777488 -78298684 - ID_B1 SINE B4 -1 223 3 6 934 632 154 70 47 chr9 45777681 45777810 -78298362 + B1_Mur3 SINE Alu 13 144 -5 6 934 352 398 28 34 chr9 45777917 45777999 -78298173 + L4 LINE RTE 580 657 -1372 6 934 1184 75 0 0 chr9 45777999 45778145 -78298027 + B1_Mus2 SINE Alu 1 146 -1 6 934 352 398 28 34 chr9 45778145 45778239 -78297933 + L4 LINE RTE 658 755 -1274 6 934 275 271 17 0 chr9 45778387 45778446 -78297726 - ID4 SINE ID -2 81 22 6 934 1151 98 12 0 chr9 45778448 45778611 -78297561 + B2_Mm1t SINE B2 15 179 -14 6 934 312 123 433 20 chr9 45778643 45778747 -78297425 + B2_Mm2 SINE B2 47 193 -2 6 934 254 330 42 67 chr9 45779036 45779156 -78297016 + PB1 SINE Alu 9 125 -2 6 934 325 203 0 129 chr9 45779074 45779159 -78297013 + ID_B1 SINE B4 151 224 0 6 934 336 315 22 0 chr9 45779379 45779471 -78296701 + RSINE1 SINE B4 2 95 -70 6 934 305 279 26 80 chr9 45779652 45779765 -78296407 + B4A SINE B4 68 174 -118 6 934 1188 55 0 0 chr9 45779848 45779994 -78296178 + B1_Mus2 SINE Alu 2 147 0 6 934 317 284 12 24 chr9 45780016 45780099 -78296073 - ID4 SINE ID -1 82 1 6 934 487 276 31 0 chr9 45780286 45780384 -78295788 + RSINE1 SINE B4 2 102 -63 6 934 679 182 56 0 chr9 45780417 45780543 -78295629 - B1_Mur4 SINE Alu -13 137 5 6 934 1252 27 7 0 chr9 45780750 45780896 -78295276 + B1_Mus2 SINE Alu 1 147 0 6 934 210 37 0 0 chr9 45780907 45780934 -78295238 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 6 934 22 0 0 0 chr9 45781222 45781244 -78294928 + AT_rich Low_complexity Low_complexity 1 22 0 6 934 532 309 26 0 chr9 45781254 45781406 -78294766 + RSINE1 SINE B4 2 157 -8 6 934 232 246 77 0 chr9 45781520 45781585 -78294587 + RSINE1 SINE B4 9 78 -87 6 934 1021 114 7 39 chr9 45781781 45781936 -78294236 + B1_Mur4 SINE Alu 1 150 0 6 934 1316 73 67 0 chr9 45781957 45782136 -78294036 + B2_Mm2 SINE B2 5 195 0 6 934 1022 52 89 0 chr9 45782286 45782421 -78293751 - B1_Mus1 SINE Alu 0 148 2 6 934 1012 116 7 20 chr9 45783377 45783527 -78292645 - B1_Mus1 SINE Alu 0 148 1 6 934 246 62 0 0 chr9 45783760 45783792 -78292380 + (A)n Simple_repeat Simple_repeat 1 32 0 6 934 466 250 78 26 chr9 45784603 45784718 -78291454 + RSINE1 SINE B4 2 122 -43 6 934 527 236 41 35 chr9 45784805 45784950 -78291222 - B1_Mur1 SINE Alu -3 146 1 6 934 308 261 24 29 chr9 45784973 45785062 -78291110 - B1F1 SINE Alu -49 99 13 6 934 270 0 0 0 chr9 45785070 45785100 -78291072 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 934 555 283 48 26 chr9 45785101 45785290 -78290882 - B3A SINE B2 -5 193 1 6 934 21 36 0 0 chr9 45785365 45785393 -78290779 + AT_rich Low_complexity Low_complexity 1 28 0 6 934 460 290 10 0 chr9 45785691 45785791 -78290381 - PB1 SINE Alu -26 101 1 6 934 337 167 91 65 chr9 45785903 45785980 -78290192 - PB1D10 SINE Alu 0 117 39 6 934 244 191 21 21 chr9 45786018 45786066 -78290106 - B1_Mur2 SINE Alu -37 112 65 6 934 398 267 160 72 chr9 45786153 45786347 -78289825 + ID_B1 SINE B4 6 216 -8 6 934 680 311 42 71 chr9 45786392 45786449 -78289723 + B4A SINE B4 60 106 -186 6 934 195 42 0 0 chr9 45786449 45786473 -78289699 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 6 934 680 311 42 71 chr9 45786473 45786654 -78289518 + B4A SINE B4 107 291 -1 6 934 857 191 14 0 chr9 45786889 45787036 -78289136 - B1_Mur2 SINE Alu 0 149 1 6 934 871 273 29 10 chr9 45787055 45787262 -78288910 - B3 SINE B2 0 216 6 6 934 393 22 0 0 chr9 45787703 45787749 -78288423 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 934 204 40 0 0 chr9 45787913 45787938 -78288234 + (GGAAA)n Simple_repeat Simple_repeat 2 26 0 6 934 451 335 11 75 chr9 45787938 45788125 -78288047 + B4 SINE B4 82 256 -36 6 934 659 215 39 0 chr9 45788123 45788253 -78287919 + B1_Mur1 SINE Alu 7 141 -8 6 934 417 344 29 58 chr9 45788253 45788315 -78287857 + B4 SINE B4 116 279 -13 6 934 370 0 0 39 chr9 45788350 45788402 -78287770 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 934 426 331 96 13 chr9 45788405 45788561 -78287611 + ID_B1 SINE B4 2 170 -54 6 934 492 169 34 0 chr9 45788789 45788878 -78287294 + B1_Mur2 SINE Alu 24 115 -34 6 934 237 283 113 0 chr9 45789126 45789232 -78286940 - PB1D7 SINE Alu 0 120 3 6 934 956 137 62 67 chr9 45789545 45789740 -78286432 - B2_Mm2 SINE B2 0 195 2 6 934 225 206 158 40 chr9 45789817 45789893 -78286279 + B1_Mur4 SINE Alu 60 144 -6 6 934 435 265 0 0 chr9 45789893 45789935 -78286237 + polypurine Low_complexity Low_complexity 1 42 0 6 934 1128 79 11 27 chr9 45789935 45790118 -78286054 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 934 435 265 0 0 chr9 45790118 45790207 -78285965 + polypurine Low_complexity Low_complexity 43 131 0 6 934 876 83 29 57 chr9 45790234 45790374 -78285798 + B1_Mus2 SINE Alu 1 136 -11 6 934 23 0 0 0 chr9 45790503 45790526 -78285646 + AT_rich Low_complexity Low_complexity 1 23 0 6 934 834 271 73 0 chr9 45790547 45790739 -78285433 + B3 SINE B2 10 215 -1 6 934 779 142 8 8 chr9 45790871 45790999 -78285173 + B1_Mus2 SINE Alu 12 139 -8 6 934 478 231 0 25 chr9 45791025 45791145 -78285027 + B3 SINE B2 1 117 -99 6 934 441 0 0 0 chr9 45791495 45791544 -78284628 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 934 288 0 0 0 chr9 45791544 45791575 -78284597 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 934 187 161 0 0 chr9 45791887 45791918 -78284254 - L3 LINE CR1 -4345 144 114 6 934 22 35 0 0 chr9 45792662 45792691 -78283481 + GC_rich Low_complexity Low_complexity 1 29 0 6 934 1110 183 226 25 chr9 45793925 45794244 -78281928 + MTD LTR MaLR 5 387 -32 7 934 336 24 0 0 chr9 45794250 45794291 -78281881 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 934 465 302 170 12 chr9 45794366 45794537 -78281635 - ID_B1 SINE B4 -25 199 2 7 934 280 100 0 0 chr9 45794628 45794668 -78281504 + B2_Mm2 SINE B2 1 40 -155 7 934 1164 44 0 0 chr9 45794668 45794805 -78281367 + B1_Mus1 SINE Alu 2 138 -10 7 934 253 43 0 61 chr9 45794820 45794869 -78281303 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 7 934 1090 75 34 0 chr9 45794874 45795021 -78281151 + B2_Mm1t SINE B2 28 179 -14 7 934 443 51 0 5 chr9 45795050 45795114 -78281058 + B2_Mm2 SINE B2 48 109 -107 7 934 180 0 0 0 chr9 45795129 45795149 -78281023 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 934 218 111 0 62 chr9 45795152 45795172 -78281000 + A-rich Low_complexity Low_complexity 1 19 0 7 934 1218 28 7 7 chr9 45795172 45795316 -78280856 + B1_Mm SINE Alu 2 145 -2 7 934 218 111 0 62 chr9 45795316 45795343 -78280829 + A-rich Low_complexity Low_complexity 20 45 0 7 934 827 247 21 5 chr9 45795348 45795535 -78280637 + B3A SINE B2 1 190 -8 7 934 218 242 0 46 chr9 45795698 45795763 -78280409 + PB1 SINE Alu 2 63 -64 7 934 504 0 0 0 chr9 45795763 45795819 -78280353 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 7 934 1184 57 0 0 chr9 45795822 45795963 -78280209 - B1_Mus2 SINE Alu -6 141 1 7 934 860 189 65 97 chr9 45795984 45796157 -78280015 - B3 SINE B2 -6 210 42 7 934 234 0 0 0 chr9 45796157 45796183 -78279989 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 934 784 181 7 21 chr9 45796183 45796324 -78279848 - B1_Mur4 SINE Alu -10 140 2 7 934 860 189 65 97 chr9 45796324 45796366 -78279806 - B3 SINE B2 -175 41 2 7 934 432 37 0 0 chr9 45796428 45796482 -78279690 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 934 225 300 70 14 chr9 45796514 45796585 -78279587 + B4A SINE B4 71 145 -147 7 934 553 259 0 0 chr9 45796539 45796647 -78279525 + B1F SINE Alu 16 123 -26 7 934 335 347 16 25 chr9 45796796 45796917 -78279255 - B1F2 SINE Alu -1 148 28 7 934 496 232 85 218 chr9 45797165 45797413 -78278759 + B3 SINE B2 1 215 -1 7 934 856 193 143 6 chr9 45797423 45797605 -78278567 + B3 SINE B2 1 207 -9 7 934 370 319 11 0 chr9 45797785 45797879 -78278293 - ID_B1 SINE B4 -129 95 1 7 934 335 286 0 42 chr9 45797945 45798040 -78278132 + PB1D10 SINE Alu 6 96 -21 7 934 576 273 81 28 chr9 45798192 45798403 -78277769 + ID_B1 SINE B4 3 224 0 7 934 476 207 13 20 chr9 45798408 45798561 -78277611 + GA-rich Low_complexity Low_complexity 2 153 0 7 934 399 232 0 0 chr9 45798565 45798634 -78277538 + ID4 SINE ID 5 73 -10 7 934 1216 129 38 0 chr9 45798654 45798840 -78277332 + B2_Mm2 SINE B2 1 193 -2 7 934 872 253 122 10 chr9 45798857 45799145 -78277027 + L1MC2 LINE L1 5433 5752 -581 7 934 185 108 27 0 chr9 45799210 45799247 -78276925 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 934 526 309 130 16 chr9 45799287 45799534 -78276638 - B4A SINE B4 -17 275 1 7 934 270 258 71 20 chr9 45799534 45799633 -78276539 + L1MC2 LINE L1 5740 5843 -490 7 934 739 209 0 22 chr9 45799648 45799785 -78276387 + B1_Mus2 SINE Alu 3 136 -11 7 934 762 11 0 0 chr9 45799785 45799872 -78276300 + (CAAAG)n Simple_repeat Simple_repeat 3 89 0 7 934 1436 60 22 5 chr9 45799954 45800138 -78276034 + B2_Mm2 SINE B2 3 189 -6 7 934 1411 86 16 0 chr9 45800390 45800577 -78275595 - B2_Mm2 SINE B2 -5 190 1 7 934 515 233 127 10 chr9 45801088 45801280 -78274892 + B4A SINE B4 4 242 -50 7 934 284 350 43 7 chr9 45801362 45801503 -78274669 - B1_Mm SINE Alu -1 146 1 7 934 460 289 13 0 chr9 45801503 45801652 -78274520 + L1MC2 LINE L1 6017 6167 -177 7 934 509 277 14 28 chr9 45801655 45801800 -78274372 + ID_B1 SINE B4 82 224 0 7 934 216 0 0 0 chr9 45802673 45802697 -78273475 + (T)n Simple_repeat Simple_repeat 1 24 0 7 934 374 210 36 36 chr9 45802701 45802785 -78273387 + MT2B LTR ERVL 181 264 -337 7 934 783 48 0 63 chr9 45802717 45802828 -78273344 + B1_Mus2 SINE Alu 43 146 -1 7 934 513 199 32 46 chr9 45802892 45803040 -78273132 + PB1 SINE Alu 21 149 -1 7 934 280 200 21 62 chr9 45803189 45803285 -78272887 + PB1D10 SINE Alu 25 116 -1 7 934 407 19 19 0 chr9 45803411 45803463 -78272709 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 934 186 43 0 0 chr9 45803955 45803978 -78272194 + (CTTTG)n Simple_repeat Simple_repeat 2 24 0 7 934 210 205 0 0 chr9 45804022 45804061 -78272111 + PB1 SINE Alu 22 60 -67 7 934 367 241 12 0 chr9 45804102 45804185 -78271987 + BC1_Mm scRNA scRNA 8 91 -61 7 934 544 208 119 30 chr9 45804272 45804406 -78271766 - B1F SINE Alu -1 148 3 7 934 595 323 45 0 chr9 45804857 45805012 -78271160 - RSINE1 SINE B4 0 165 4 7 934 194 33 0 62 chr9 45805124 45805156 -78271016 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 934 558 147 47 47 chr9 45805307 45805414 -78270758 + B1_Mur4 SINE Alu 2 108 -42 7 934 429 20 0 0 chr9 45805414 45805464 -78270708 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 7 934 245 304 0 0 chr9 45805519 45805575 -78270597 + ID_B1 SINE B4 156 211 -13 7 934 657 231 152 49 chr9 45805602 45805866 -78270306 + B4A SINE B4 2 292 0 7 934 644 286 123 22 chr9 45805930 45806259 -78269913 - MLT2B1 LTR ERVL -21 546 90 7 934 464 200 49 20 chr9 45806259 45806361 -78269811 + RSINE1 SINE B4 1 105 -60 7 934 1376 69 0 11 chr9 45806494 45806671 -78269501 + B2_Mm2 SINE B2 2 176 -19 7 934 24 53 0 0 chr9 45806682 45806720 -78269452 + AT_rich Low_complexity Low_complexity 1 38 0 7 934 252 0 0 0 chr9 45807434 45807462 -78268710 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 7 934 489 266 147 0 chr9 45807477 45807620 -78268552 - B4A SINE B4 -127 165 2 7 934 263 317 37 0 chr9 45807620 45807695 -78268477 - B1F2 SINE Alu -71 78 1 7 934 3611 267 38 68 chr9 45808335 45809577 -78266595 + Lx8 LINE L1 6205 7409 -64 7 934 324 0 0 0 chr9 45809579 45809615 -78266557 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 934 254 218 143 44 chr9 45809711 45809802 -78266370 - L1M4 LINE L1 -603 5575 5476 7 934 443 267 25 17 chr9 45809854 45809972 -78266200 - ID_B1 SINE B4 0 224 106 7 934 469 255 0 0 chr9 45810012 45810110 -78266062 - B3A SINE B2 -56 142 45 7 934 27 29 0 0 chr9 45810173 45810207 -78265965 + AT_rich Low_complexity Low_complexity 1 34 0 7 934 1362 71 27 11 chr9 45810214 45810399 -78265773 + B2_Mm2 SINE B2 1 188 -7 7 934 708 226 72 7 chr9 45810405 45810543 -78265629 + B1_Mur4 SINE Alu 3 149 -1 7 934 874 223 28 11 chr9 45810538 45810715 -78265457 - B3 SINE B2 -35 181 2 7 934 1438 80 0 16 chr9 45810731 45810921 -78265251 + B2_Mm2 SINE B2 1 187 -8 7 934 26 30 0 0 chr9 45811000 45811033 -78265139 + AT_rich Low_complexity Low_complexity 1 33 0 7 934 2009 129 111 0 chr9 45811048 45811380 -78264792 - ORR1C1 LTR MaLR 0 378 10 7 934 204 40 0 0 chr9 45811381 45811406 -78264766 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 7 934 213 250 42 0 chr9 45811408 45811456 -78264716 + B3A SINE B2 6 55 -143 7 934 270 0 0 0 chr9 45811456 45811486 -78264686 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 934 1162 81 0 7 chr9 45811494 45811643 -78264529 + B1_Mus1 SINE Alu 1 148 0 7 934 267 250 31 0 chr9 45811656 45811720 -78264452 - B1_Mus2 SINE Alu -77 70 5 7 934 243 287 238 0 chr9 45811659 45811781 -78264391 - B4A SINE B4 -140 152 2 7 934 602 164 213 0 chr9 45812348 45812470 -78263702 - B1_Mur4 SINE Alu -1 149 2 7 934 704 239 7 7 chr9 45812510 45812645 -78263527 + ID_B1 SINE B4 82 216 -8 7 934 724 307 70 31 chr9 45812667 45812926 -78263246 + B4A SINE B4 2 270 -22 7 934 459 78 0 0 chr9 45812928 45812992 -78263180 + (CATA)n Simple_repeat Simple_repeat 1 64 0 7 934 246 164 0 0 chr9 45813001 45813056 -78263116 + (CCA)n Simple_repeat Simple_repeat 1 55 0 7 934 364 272 126 0 chr9 45813077 45813180 -78262992 + PB1D10 SINE Alu 2 117 0 7 934 211 305 39 78 chr9 45813179 45813282 -78262890 - B4A SINE B4 -133 159 61 7 934 213 235 0 19 chr9 45813581 45813633 -78262539 + B1F1 SINE Alu 5 55 -94 7 934 285 243 86 138 chr9 45813590 45813687 -78262485 + MT2B LTR ERVL 66 151 -450 7 934 700 219 29 0 chr9 45813687 45813824 -78262348 + B1_Mur4 SINE Alu 2 142 -8 7 934 673 185 73 7 chr9 45814005 45814141 -78262031 + B1_Mus2 SINE Alu 1 145 -2 7 934 537 187 56 9 chr9 45814873 45814981 -78261191 + B1_Mur4 SINE Alu 37 149 -1 7 934 533 190 57 8 chr9 45814997 45815119 -78261053 + B1_Mur2 SINE Alu 9 136 -13 7 934 216 0 0 0 chr9 45815119 45815143 -78261029 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 7 934 484 205 0 43 chr9 45815151 45815243 -78260929 + B3 SINE B2 40 127 -89 7 934 756 22 0 0 chr9 45815244 45815334 -78260838 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 7 934 905 142 7 39 chr9 45815355 45815509 -78260663 - B1_Mur3 SINE Alu 0 149 1 7 934 21 36 0 0 chr9 45815583 45815611 -78260561 + AT_rich Low_complexity Low_complexity 1 28 0 7 934 464 255 59 0 chr9 45815611 45815713 -78260459 - PB1D7 SINE Alu 0 120 13 7 934 288 318 0 0 chr9 45815766 45815829 -78260343 - ID4_ SINE ID 0 83 21 8 934 414 0 0 0 chr9 45815837 45815883 -78260289 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 934 559 230 23 45 chr9 45815884 45816016 -78260156 - RSINE1 SINE B4 -34 131 3 8 934 319 273 29 135 chr9 45816109 45816425 -78259747 - B4A SINE B4 -19 273 5 8 934 300 27 0 0 chr9 45816519 45816556 -78259616 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 8 934 1083 46 0 0 chr9 45816557 45816688 -78259484 - B1_Mus1 SINE Alu -13 135 5 8 934 1242 190 110 81 chr9 45817060 45817432 -78258740 + RMER10A LTR ERVL 1 383 -59 8 934 305 323 47 35 chr9 45817546 45817716 -78258456 - ORR1E LTR MaLR -168 191 20 8 934 440 335 19 12 chr9 45817831 45817991 -78258181 + MIR SINE MIR 21 181 -81 8 934 691 100 213 16 chr9 45817992 45818114 -78258058 - B1_Mur3 SINE Alu 0 149 4 8 934 203 88 29 0 chr9 45818181 45818215 -78257957 + (TTA)n Simple_repeat Simple_repeat 2 36 0 8 934 310 276 1 91 chr9 45818480 45818577 -78257595 + ID_B1 SINE B4 8 95 -197 8 934 1109 68 0 14 chr9 45818577 45818725 -78257447 + B1_Mus1 SINE Alu 2 147 -1 8 934 226 0 0 56 chr9 45818725 45818761 -78257411 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 934 489 295 7 96 chr9 45818761 45818898 -78257274 + ID_B1 SINE B4 92 211 -13 8 934 589 206 28 14 chr9 45818908 45819038 -78257134 + B1_Mur2 SINE Alu 5 137 -12 8 934 366 23 0 0 chr9 45819038 45819081 -78257091 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 934 589 206 28 14 chr9 45819081 45819093 -78257079 + B1_Mur2 SINE Alu 138 149 0 8 934 22 35 0 0 chr9 45820808 45820837 -78255335 + GC_rich Low_complexity Low_complexity 1 29 0 8 934 34 42 0 0 chr9 45820872 45820920 -78255252 + GC_rich Low_complexity Low_complexity 1 48 0 8 934 40 79 0 0 chr9 45820997 45821086 -78255086 + GC_rich Low_complexity Low_complexity 1 89 0 8 934 378 0 0 0 chr9 45823058 45823100 -78253072 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 934 27 29 0 0 chr9 45824337 45824371 -78251801 + AT_rich Low_complexity Low_complexity 1 34 0 8 934 348 303 88 66 chr9 45824465 45824709 -78251463 + MIR SINE MIR 16 259 -3 8 934 408 284 0 10 chr9 45824919 45825015 -78251157 - B1F SINE Alu -54 95 1 8 934 271 327 0 96 chr9 45824920 45825035 -78251137 - ID_B1 SINE B4 -52 172 69 8 934 224 206 188 14 chr9 45825139 45825208 -78250964 - ID4_ SINE ID -1 82 2 8 934 251 322 43 32 chr9 45825242 45825335 -78250837 - B1F SINE Alu -28 121 28 8 934 636 238 104 21 chr9 45825416 45825609 -78250563 - B3 SINE B2 -7 209 1 8 934 546 198 53 26 chr9 45825860 45825974 -78250198 + PB1D10 SINE Alu 1 117 0 8 934 249 33 0 0 chr9 45826822 45826852 -78249320 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 8 934 189 0 0 0 chr9 45826904 45826925 -78249247 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 8 934 640 154 32 24 chr9 45827099 45827225 -78248947 + B1_Mur4 SINE Alu 24 150 0 8 934 237 341 70 37 chr9 45827345 45827539 -78248633 - L2c LINE L2 -262 3125 2912 8 934 284 272 64 3 chr9 45828289 45828301 -78247871 + PB1D10 SINE Alu 1 31 -119 8 934 326 206 15 0 chr9 45828301 45828369 -78247803 + ID_B1 SINE B4 93 161 -63 8 934 284 272 64 3 chr9 45828369 45828399 -78247773 + PB1D10 SINE Alu 32 119 -31 8 934 23 0 0 0 chr9 45828403 45828426 -78247746 + AT_rich Low_complexity Low_complexity 1 23 0 8 934 669 25 0 0 chr9 45828688 45828767 -78247405 + (TCCCC)n Simple_repeat Simple_repeat 3 81 0 8 934 388 295 38 15 chr9 45828973 45829104 -78247068 - ID_B1 SINE B4 -47 177 44 8 934 560 218 64 0 chr9 45829111 45829221 -78246951 - B1_Mur2 SINE Alu -27 122 6 8 934 292 231 52 103 chr9 45829127 45829243 -78246929 - MT2B LTR ERVL -343 258 149 8 934 255 146 55 0 chr9 45829208 45829263 -78246909 - MTC LTR MaLR -193 228 171 8 934 225 289 13 13 chr9 45829285 45829362 -78246810 + B4A SINE B4 1 77 -215 8 934 286 250 62 12 chr9 45829394 45829472 -78246700 + B4A SINE B4 149 230 -62 8 934 587 224 38 23 chr9 45829472 45829650 -78246522 + B3A SINE B2 1 189 -4 8 934 255 274 39 64 chr9 45829645 45829723 -78246449 + B4A SINE B4 217 292 0 8 934 326 274 108 0 chr9 45829756 45829858 -78246314 - RSINE1 SINE B4 -51 114 2 8 934 21 0 0 0 chr9 45829944 45829965 -78246207 + AT_rich Low_complexity Low_complexity 1 21 0 8 934 645 243 36 21 chr9 45830080 45830273 -78245899 + B3A SINE B2 2 197 -1 8 934 369 0 0 0 chr9 45830366 45830407 -78245765 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 934 185 0 0 39 chr9 45830477 45830503 -78245669 + (GGCTG)n Simple_repeat Simple_repeat 4 28 0 8 934 287 217 29 0 chr9 45830718 45830787 -78245385 - ID4 SINE ID -12 71 1 8 934 300 286 18 37 chr9 45831339 45831448 -78244724 - L1ME4a LINE L1 -5 6119 6013 8 934 27 29 0 0 chr9 45831652 45831686 -78244486 + AT_rich Low_complexity Low_complexity 1 34 0 8 934 446 284 44 23 chr9 45831701 45831863 -78244309 - L1ME4a LINE L1 -431 5693 5527 8 934 210 71 0 0 chr9 45831886 45831914 -78244258 + (GCTG)n Simple_repeat Simple_repeat 4 31 0 8 934 1630 47 0 0 chr9 45832180 45832372 -78243800 - B2_Mm1a SINE B2 -1 192 1 8 934 311 232 49 29 chr9 45832374 45832452 -78243720 - PB1D10 SINE Alu -1 119 38 8 934 338 200 25 62 chr9 45832580 45832660 -78243512 - ID4 SINE ID -6 77 1 8 934 1152 36 7 0 chr9 45832706 45832843 -78243329 + B1_Mus2 SINE Alu 1 138 -9 8 934 180 0 0 0 chr9 45832843 45832863 -78243309 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 934 249 274 319 0 chr9 45832871 45832984 -78243188 - B3A SINE B2 -48 150 2 8 934 425 295 142 42 chr9 45833052 45833431 -78242741 - Tigger13a DNA MER2_type -143 628 212 8 934 256 247 26 0 chr9 45833447 45833524 -78242648 + ID4_ SINE ID 1 79 -4 8 934 207 0 0 0 chr9 45833987 45834010 -78242162 + (A)n Simple_repeat Simple_repeat 1 23 0 8 934 240 163 0 0 chr9 45834807 45834850 -78241322 + CT-rich Low_complexity Low_complexity 3 45 0 8 934 1180 89 0 6 chr9 45834853 45835023 -78241149 - B2_Mm2 SINE B2 -26 169 1 8 934 219 36 0 0 chr9 45835102 45835130 -78241042 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 934 553 242 55 0 chr9 45835148 45835276 -78240896 - RSINE1 SINE B4 -28 137 3 8 934 552 100 98 20 chr9 45835311 45835413 -78240759 - B1_Mur4 SINE Alu -5 145 36 8 934 319 218 114 61 chr9 45835413 45835443 -78240729 - ID_B1 SINE B4 -5 219 81 8 934 1212 285 129 21 chr9 45835715 45836249 -78239923 - L1MB7 LINE L1 -79 6105 5514 8 934 772 113 14 21 chr9 45836754 45836898 -78239274 - BC1_Mm scRNA scRNA -9 143 1 8 934 201 154 0 0 chr9 45836898 45836937 -78239235 + T-rich Low_complexity Low_complexity 1 39 0 8 934 808 174 21 0 chr9 45836940 45837084 -78239088 - B1_Mus2 SINE Alu 0 147 1 8 934 25 51 0 0 chr9 45837164 45837203 -78238969 + AT_rich Low_complexity Low_complexity 1 39 0 8 934 299 115 19 0 chr9 45837351 45837403 -78238769 - RLTR15 LTR ERVK -303 56 4 8 934 386 202 13 0 chr9 45837422 45837501 -78238671 - ID_B1 SINE B4 -67 157 78 8 934 414 263 0 29 chr9 45837500 45837602 -78238570 - B1F SINE Alu -1 148 50 8 934 2141 229 92 10 chr9 45837604 45838179 -78237993 - Lx8 LINE L1 -420 7053 6432 8 934 257 115 55 55 chr9 45838230 45838285 -78237887 - PB1D10 SINE Alu -1 116 62 8 934 717 232 26 0 chr9 45838241 45838392 -78237780 - ID_B1 SINE B4 -9 215 61 8 934 581 206 7 28 chr9 45838523 45838668 -78237504 + B1_Mur3 SINE Alu 1 142 -7 8 934 844 175 200 17 chr9 45838961 45839141 -78237031 - B3 SINE B2 0 216 4 8 934 817 243 48 10 chr9 45840698 45840906 -78235266 - B3 SINE B2 0 216 1 8 934 206 88 0 56 chr9 45841547 45841583 -78234589 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 8 934 968 167 0 0 chr9 45841585 45841735 -78234437 + B1_Mur4 SINE Alu 1 150 0 8 934 660 222 13 53 chr9 45841766 45841918 -78234254 - B1_Mur2 SINE Alu 0 149 4 8 934 549 110 0 0 chr9 45841922 45842004 -78234168 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 8 934 1767 27 13 59 chr9 45842298 45842403 -78233769 - L1Md_F2 LINE L1 0 6582 6476 8 934 1544 33 33 0 chr9 45842403 45842584 -78233588 - B2_Mm1a SINE B2 -6 187 1 8 934 1767 27 13 59 chr9 45842584 45842715 -78233457 - L1Md_F2 LINE L1 -107 6475 6357 8 934 579 230 70 80 chr9 45842715 45842928 -78233244 - ID_B1 SINE B4 -13 211 1 8 934 1295 14 0 0 chr9 45844197 45844344 -78231828 + B1_Mm SINE Alu 1 147 0 8 934 387 314 74 0 chr9 45844349 45844470 -78231702 + RSINE1 SINE B4 28 157 -8 8 934 782 189 0 27 chr9 45844517 45844664 -78231508 - B1_Mus1 SINE Alu 0 148 6 8 934 1191 48 7 0 chr9 45844816 45844961 -78231211 - B1_Mm SINE Alu 0 147 2 8 934 180 0 0 0 chr9 45845499 45845519 -78230653 + (T)n Simple_repeat Simple_repeat 1 20 0 8 934 1635 37 0 0 chr9 45845525 45845713 -78230459 - B2_Mm1a SINE B2 -4 189 2 8 934 776 234 37 16 chr9 45845770 45845957 -78230215 + B3 SINE B2 26 216 0 8 934 248 250 35 59 chr9 45846406 45846491 -78229681 + ID4_ SINE ID 1 83 0 8 934 246 224 264 77 chr9 45846605 45846658 -78229514 + ID_B1 SINE B4 34 217 -7 8 934 410 190 49 20 chr9 45846658 45846760 -78229412 + PB1D9 SINE Alu 9 113 -7 8 934 24 0 0 0 chr9 45847808 45847832 -78228340 + AT_rich Low_complexity Low_complexity 1 24 0 8 934 460 360 13 13 chr9 45847882 45848121 -78228051 - LTR73 LTR ERV1 -316 256 18 8 934 358 284 117 31 chr9 45848121 45848317 -78227855 + RCHARR1 DNA MER1_type 1 213 -761 8 934 296 288 65 76 chr9 45848365 45848427 -78227745 + RCHARR1 DNA MER1_type 334 395 -579 8 934 1050 89 0 20 chr9 45848427 45848576 -78227596 + B1_Mus1 SINE Alu 2 147 -1 9 934 296 288 65 76 chr9 45848576 45848697 -78227475 + RCHARR1 DNA MER1_type 396 515 -459 8 934 747 154 7 44 chr9 45848686 45848822 -78227350 - B1_Mur4 SINE Alu 0 150 20 9 934 875 163 14 0 chr9 45848914 45849055 -78227117 + B1_Mus2 SINE Alu 5 147 0 9 934 213 244 0 0 chr9 45849157 45849202 -78226970 - RSINE1 SINE B4 -117 48 4 9 934 247 333 54 0 chr9 45849313 45849406 -78226766 + RSINE1 SINE B4 33 130 -35 9 934 261 0 0 0 chr9 45849834 45849863 -78226309 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 9 934 264 242 32 16 chr9 45849874 45849937 -78226235 - B1F2 SINE Alu -85 64 1 9 934 2061 62 58 4 chr9 45849993 45850268 -78225904 + L1_Mus1 LINE L1 6277 6566 -1 9 934 502 187 19 9 chr9 45850322 45850430 -78225742 + B1_Mur3 SINE Alu 41 149 0 9 934 22 56 0 0 chr9 45850430 45850466 -78225706 + AT_rich Low_complexity Low_complexity 1 36 0 9 934 21 0 0 0 chr9 45850900 45850921 -78225251 + AT_rich Low_complexity Low_complexity 1 21 0 9 934 408 291 25 68 chr9 45850941 45851103 -78225069 - RSINE1 SINE B4 -8 157 3 9 934 370 236 13 65 chr9 45851116 45851289 -78224883 - L1M5 LINE L1 -715 5464 5300 9 934 1241 85 0 36 chr9 45851431 45851626 -78224546 - B2_Mm2 SINE B2 -2 193 6 9 934 525 260 86 27 chr9 45851758 45851944 -78224228 - B3A SINE B2 0 198 2 9 934 916 40 0 16 chr9 45852007 45852133 -78224039 + B1_Mus2 SINE Alu 22 145 -2 9 934 396 0 0 0 chr9 45852133 45852177 -78223995 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 9 934 408 88 0 0 chr9 45852190 45852247 -78223925 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 934 324 0 0 0 chr9 45852247 45852283 -78223889 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 934 642 250 7 0 chr9 45852283 45852435 -78223737 - B3A SINE B2 -44 154 2 9 934 399 103 0 56 chr9 45852789 45852861 -78223311 + B1_Mus2 SINE Alu 71 138 -9 9 934 618 60 0 0 chr9 45852861 45852944 -78223228 + (CA)n Simple_repeat Simple_repeat 2 84 0 9 934 423 252 28 18 chr9 45853041 45853150 -78223022 + PB1D7 SINE Alu 1 110 -10 9 934 383 257 91 116 chr9 45853354 45853552 -78222620 + B3A SINE B2 4 196 -2 9 934 325 206 28 56 chr9 45853976 45854084 -78222088 - B1_Mur4 SINE Alu -32 118 14 9 934 252 0 0 0 chr9 45856022 45856050 -78220122 + (T)n Simple_repeat Simple_repeat 1 28 0 9 934 677 150 126 0 chr9 45856119 45856246 -78219926 - B1_Mus1 SINE Alu -4 144 2 9 934 324 295 0 10 chr9 45856346 45856442 -78219730 - B3 SINE B2 -12 204 110 9 934 426 227 11 206 chr9 45856487 45856628 -78219544 - B3A SINE B2 -46 152 33 9 934 908 70 116 0 chr9 45856628 45856757 -78219415 + B1_Mus2 SINE Alu 3 146 -1 9 934 426 227 11 206 chr9 45856757 45856804 -78219368 - B3A SINE B2 -166 32 1 9 934 244 269 64 11 chr9 45856840 45856934 -78219238 - PB1D7 SINE Alu -1 119 21 9 934 216 163 0 0 chr9 45856946 45856989 -78219183 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 9 934 234 62 0 0 chr9 45856992 45857024 -78219148 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 934 229 297 80 90 chr9 45857044 45857144 -78219028 - PB1 SINE Alu -16 111 13 9 934 348 173 72 44 chr9 45857333 45857437 -78218735 - B1_Mur3 SINE Alu 0 149 2 9 934 210 254 127 42 chr9 45857746 45857935 -78218237 - MIR SINE MIR -11 251 47 9 934 1248 251 141 12 chr9 45858011 45858431 -78217741 - RLTR11A2 LTR ERVK -53 474 1 9 934 733 286 143 45 chr9 45858553 45859120 -78217052 - L1MC2 LINE L1 -318 6026 5396 9 934 856 122 49 28 chr9 45859120 45859264 -78216908 - B1_Mus1 SINE Alu 0 148 2 9 934 733 286 143 45 chr9 45859264 45859359 -78216813 - L1MC2 LINE L1 -949 5395 5299 9 934 348 223 114 71 chr9 45859493 45859633 -78216539 - RSINE1 SINE B4 -6 159 14 9 934 287 266 23 46 chr9 45859641 45859771 -78216401 - L1M4 LINE L1 -820 5326 5200 9 934 1294 235 64 17 chr9 45859834 45860193 -78215979 + MTE2a LTR MaLR 1 376 -3 9 934 870 169 14 0 chr9 45860455 45860597 -78215575 + B1_Mur2 SINE Alu 1 144 -5 9 934 342 250 35 69 chr9 45860931 45861047 -78215125 + B3A SINE B2 71 182 -16 9 934 4768 22 4 6 chr9 45861693 45862240 -78213932 - L1Md_F2 LINE L1 0 6582 6037 9 934 348 241 148 26 chr9 45862568 45862683 -78213489 - MIR SINE MIR -64 144 16 9 934 435 171 0 0 chr9 45863121 45863226 -78212946 + CT-rich Low_complexity Low_complexity 2 106 0 9 934 21 0 0 0 chr9 45863338 45863359 -78212813 + AT_rich Low_complexity Low_complexity 1 21 0 9 934 554 214 17 17 chr9 45863459 45863578 -78212594 - B1_Mur1 SINE Alu -30 119 1 9 934 358 198 45 23 chr9 45863637 45863725 -78212447 - RSINE1 SINE B4 -31 134 45 9 934 261 276 30 20 chr9 45866029 45866129 -78210043 - Lx7 LINE L1 -17 7679 7579 9 934 318 26 0 0 chr9 45866165 45866204 -78209968 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 934 5023 248 80 32 chr9 45866221 45866676 -78209496 - Lx7 LINE L1 -398 7298 6801 9 934 1203 61 0 0 chr9 45866676 45866823 -78209349 - B1_Mus2 SINE Alu 0 147 1 9 934 5023 248 80 32 chr9 45866823 45867999 -78208173 - Lx7 LINE L1 -896 6800 5590 9 934 986 218 29 0 chr9 45868031 45868237 -78207935 - B3 SINE B2 -3 213 2 9 934 652 169 8 25 chr9 45869183 45869304 -78206868 - PB1D9 SINE Alu 0 120 2 9 934 264 312 95 47 chr9 45869381 45869529 -78206643 - RSINE1 SINE B4 -2 163 9 9 934 186 43 0 0 chr9 45869646 45869669 -78206503 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 934 396 0 0 0 chr9 45870064 45870108 -78206064 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 934 579 218 40 66 chr9 45870488 45870640 -78205532 - B1_Mur1 SINE Alu 0 149 2 9 934 348 213 13 26 chr9 45870796 45870873 -78205299 + ID_B1 SINE B4 91 166 -58 9 934 355 250 156 0 chr9 45871314 45871410 -78204762 + PB1D7 SINE Alu 1 111 -9 9 934 320 275 12 0 chr9 45871469 45871549 -78204623 + ID4 SINE ID 2 82 -1 9 934 284 296 27 82 chr9 45871935 45872082 -78204090 - B4 SINE B4 -109 183 45 9 934 676 282 162 11 chr9 45872103 45872455 -78203717 + L1MB7 LINE L1 5688 6092 -92 9 934 249 204 0 69 chr9 45872534 45872592 -78203580 + tRNA-Ala-GCY_ tRNA tRNA 2 55 -20 9 934 695 230 99 5 chr9 45873232 45873424 -78202748 - B3 SINE B2 -5 211 2 9 934 367 286 18 9 chr9 45873435 45873548 -78202624 - ID_B1 SINE B4 -27 197 84 9 934 535 284 123 60 chr9 45873860 45873999 -78202173 + MTD LTR MaLR 10 143 -278 9 934 183 100 0 0 chr9 45873999 45874029 -78202143 + (CAGAGA)n Simple_repeat Simple_repeat 4 33 0 9 934 718 198 120 29 chr9 45874029 45874275 -78201897 + MTD LTR MaLR 144 417 -2 9 934 259 130 0 36 chr9 45874469 45874525 -78201647 + CT-rich Low_complexity Low_complexity 1 54 0 9 934 281 254 17 0 chr9 45874545 45874604 -78201568 - B1F2 SINE Alu -89 60 1 9 934 340 250 25 67 chr9 45874606 45874726 -78201446 - PB1D10 SINE Alu 0 117 3 9 935 683 200 14 29 chr9 45875262 45875401 -78200771 - B1_Mur2 SINE Alu -11 138 2 9 935 317 143 0 56 chr9 45876326 45876415 -78199757 + CT-rich Low_complexity Low_complexity 2 85 0 9 935 477 47 0 0 chr9 45876415 45876479 -78199693 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 935 386 155 81 35 chr9 45876485 45876572 -78199600 - B1_Mur1 SINE Alu -25 124 34 9 935 736 269 0 0 chr9 45876739 45876899 -78199273 - RSINE1 SINE B4 -4 161 2 9 935 464 159 93 12 chr9 45877070 45877181 -78198991 - B1_Mur4 SINE Alu -21 129 2 9 935 219 282 47 12 chr9 45877104 45877190 -78198982 - B4A SINE B4 -121 171 83 9 935 270 188 130 0 chr9 45877494 45877563 -78198609 + ID_B1 SINE B4 147 224 0 9 935 275 160 0 0 chr9 45878005 45878055 -78198117 - PB1D9 SINE Alu -65 55 6 9 935 361 157 129 0 chr9 45880037 45880107 -78196065 + PB1D10 SINE Alu 3 81 -36 9 935 698 235 62 0 chr9 45880202 45880381 -78195791 - B3 SINE B2 0 216 27 9 935 417 31 0 84 chr9 45880842 45880913 -78195259 + B1_Mus2 SINE Alu 83 147 0 9 935 21 71 0 0 chr9 45881099 45881141 -78195031 + AT_rich Low_complexity Low_complexity 1 42 0 9 935 203 152 0 0 chr9 45881141 45881174 -78194998 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 935 360 0 0 0 chr9 45881990 45882030 -78194142 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 935 180 0 0 0 chr9 45882090 45882110 -78194062 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 935 768 128 31 23 chr9 45882116 45882244 -78193928 - B1_Mur1 SINE Alu -16 133 5 9 935 363 184 22 33 chr9 45882777 45882867 -78193305 + PB1D10 SINE Alu 14 102 -15 9 935 519 17 0 0 chr9 45883183 45883243 -78192929 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 9 935 578 254 90 6 chr9 45883251 45883417 -78192755 - ID_B1 SINE B4 -23 201 22 9 935 348 325 42 0 chr9 45883509 45883629 -78192543 + PB1 SINE Alu 1 125 -2 9 935 310 89 0 0 chr9 45883684 45883729 -78192443 + B1F SINE Alu 104 148 -1 9 935 718 157 26 0 chr9 45884040 45884155 -78192017 + B1_Mur3 SINE Alu 3 120 -29 9 935 234 214 27 67 chr9 45884335 45884410 -78191762 + L1M5 LINE L1 5850 5921 -523 9 935 481 223 273 26 chr9 45884968 45885133 -78191039 - B3A SINE B2 -8 208 3 9 935 739 203 7 7 chr9 45885184 45885328 -78190844 - B1_Mur3 SINE Alu 0 149 6 9 935 347 318 24 79 chr9 45885186 45885350 -78190822 - B4 SINE B4 -69 223 69 9 935 21 0 0 0 chr9 45886408 45886429 -78189743 + AT_rich Low_complexity Low_complexity 1 21 0 9 935 1151 58 0 0 chr9 45886442 45886581 -78189591 + B1_Mus2 SINE Alu 2 140 -7 1 935 284 267 30 109 chr9 45886773 45886874 -78189298 - PB1D10 SINE Alu -23 94 2 1 935 273 271 0 0 chr9 45886949 45887008 -78189164 - ID4 SINE ID -24 59 1 1 935 472 312 55 14 chr9 45887137 45887283 -78188889 + B3 SINE B2 52 203 -13 1 935 880 209 19 38 chr9 45887433 45887642 -78188530 - B3 SINE B2 -5 211 7 1 935 526 234 80 0 chr9 45887656 45887793 -78188379 - B1_Mur2 SINE Alu 0 149 2 1 935 231 302 21 10 chr9 45887862 45887959 -78188213 + (TG)n Simple_repeat Simple_repeat 1 98 0 1 935 608 304 57 19 chr9 45887977 45888182 -78187990 - B4A SINE B4 -6 286 73 1 935 252 0 0 0 chr9 45888182 45888210 -78187962 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 935 660 209 69 8 chr9 45888211 45888341 -78187831 - B1_Mur4 SINE Alu -11 139 2 1 935 382 262 31 94 chr9 45888341 45888396 -78187776 - MT2B LTR ERVL -449 152 108 1 935 555 240 6 13 chr9 45888396 45888552 -78187620 + L1MD LINE L1 4995 5149 -997 1 935 360 0 0 0 chr9 45888610 45888650 -78187522 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 935 319 252 28 7 chr9 45888728 45888836 -78187336 + PB1D10 SINE Alu 15 128 -21 1 935 269 240 75 19 chr9 45889088 45889194 -78186978 + L1MD LINE L1 5270 5381 -765 1 935 751 266 117 4 chr9 45889372 45889629 -78186543 - B4A SINE B4 -6 286 1 1 935 530 292 109 64 chr9 45889633 45889957 -78186215 - L1ME4a LINE L1 -1950 5932 5601 1 935 186 189 0 0 chr9 45890013 45890050 -78186122 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 935 303 260 55 0 chr9 45892243 45892316 -78183856 - RSINE1 SINE B4 -69 96 20 1 935 866 225 27 0 chr9 45892346 45892533 -78183639 + B3A SINE B2 1 192 -6 1 935 192 77 0 0 chr9 45892915 45892941 -78183231 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1 935 663 218 7 43 chr9 45892943 45893082 -78183090 - B1_Mur1 SINE Alu 0 149 16 1 935 1031 202 64 5 chr9 45893088 45893292 -78182880 - MTD LTR MaLR -203 216 1 1 935 1334 69 26 31 chr9 45893325 45893347 -78182825 - B2_Mm2 SINE B2 0 195 170 1 935 681 47 0 0 chr9 45893347 45893432 -78182740 + (TTCC)n Simple_repeat Simple_repeat 1 85 0 1 935 1334 69 26 31 chr9 45893432 45893604 -78182568 - B2_Mm2 SINE B2 -26 169 2 1 935 445 261 63 0 chr9 45893635 45893746 -78182426 + B1F1 SINE Alu 2 119 -30 1 935 742 272 102 16 chr9 45893755 45894081 -78182091 + MTE2b LTR MaLR 15 376 -3 1 935 629 169 192 0 chr9 45894779 45894909 -78181263 - B3 SINE B2 -4 212 58 1 935 296 226 118 35 chr9 45895971 45896069 -78180103 + PB1 SINE Alu 9 127 0 1 935 397 229 19 0 chr9 45896600 45896705 -78179467 - PB1D10 SINE Alu -8 109 3 1 935 310 195 23 68 chr9 45897859 45897947 -78178225 + MTEb LTR MaLR 289 372 -7 1 935 298 333 34 51 chr9 45898287 45898404 -78177768 - PB1 SINE Alu -2 125 11 1 935 899 132 0 7 chr9 45898468 45898620 -78177552 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1 935 932 87 87 0 chr9 45898625 45898751 -78177421 - B1_Mus1 SINE Alu -7 141 5 1 935 753 127 111 0 chr9 45898755 45898881 -78177291 - B1_Mus1 SINE Alu 0 148 9 1 935 320 246 144 82 chr9 45898760 45898906 -78177266 - B4 SINE B4 -73 219 65 1 935 249 203 189 0 chr9 45899023 45899097 -78177075 - B1F SINE Alu 0 149 62 1 935 3393 49 2 2 chr9 45899115 45899522 -78176650 - MTB_Mm LTR MaLR 0 407 1 1 935 739 39 0 29 chr9 45899538 45899643 -78176529 + (TCTCCC)n Simple_repeat Simple_repeat 2 103 0 1 935 24 32 0 0 chr9 45900004 45900035 -78176137 + AT_rich Low_complexity Low_complexity 1 31 0 1 935 665 203 13 53 chr9 45901255 45901406 -78174766 + B1_Mur2 SINE Alu 5 149 0 1 935 234 314 157 0 chr9 45901775 45901896 -78174276 - MIRb SINE MIR -90 178 39 1 935 977 242 61 76 chr9 45902153 45902430 -78173742 + B4A SINE B4 8 280 -12 1 935 228 135 0 0 chr9 45902969 45903006 -78173166 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1 935 626 184 53 0 chr9 45903006 45903120 -78173052 - ID_B1 SINE B4 -1 223 104 1 935 28 0 0 0 chr9 45903235 45903263 -78172909 + GC_rich Low_complexity Low_complexity 1 28 0 1 935 2277 135 113 5 chr9 45903729 45904109 -78172063 + MTC LTR MaLR 1 421 0 1 935 1021 72 14 0 chr9 45904188 45904327 -78171845 + B1_Mus1 SINE Alu 8 148 0 1 935 225 0 0 0 chr9 45904327 45904352 -78171820 + (A)n Simple_repeat Simple_repeat 1 25 0 1 935 715 266 38 14 chr9 45904525 45904735 -78171437 + ID_B1 SINE B4 8 222 -2 1 935 363 288 8 39 chr9 45904880 45905010 -78171162 + ID_B1 SINE B4 73 198 -26 1 935 537 242 8 0 chr9 45904898 45905018 -78171154 + B1_Mus2 SINE Alu 6 126 -21 1 935 180 77 0 0 chr9 45905280 45905306 -78170866 + (CTG)n Simple_repeat Simple_repeat 3 28 0 1 935 642 113 0 0 chr9 45905863 45905960 -78170212 + (TG)n Simple_repeat Simple_repeat 2 98 0 1 935 426 268 40 24 chr9 45905969 45906095 -78170077 - RSINE1 SINE B4 -36 129 2 1 935 180 0 0 0 chr9 45907300 45907320 -78168852 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 1 935 431 293 213 90 chr9 45907539 45907783 -78168389 - B4A SINE B4 -18 274 1 1 935 181 193 100 50 chr9 45908706 45908766 -78167406 - L2 LINE L2 -482 2937 2875 1 935 942 222 45 0 chr9 45908814 45909012 -78167160 + B3 SINE B2 9 215 -1 1 935 513 314 16 0 chr9 45909218 45909339 -78166833 - RSINE1 SINE B4 0 165 43 1 935 783 257 35 0 chr9 45911696 45911867 -78164305 + B3 SINE B2 1 177 -39 1 935 270 0 0 0 chr9 45911874 45911904 -78164268 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 935 1158 194 19 5 chr9 45911926 45912138 -78164034 + B3 SINE B2 2 216 0 1 935 296 246 67 76 chr9 45912158 45912277 -78163895 + PB1D7 SINE Alu 1 118 -2 1 935 330 291 92 0 chr9 45912303 45912444 -78163728 + Charlie13a DNA Charlie 255 408 -1106 1 935 250 45 22 22 chr9 45912593 45912638 -78163534 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1 935 728 265 58 26 chr9 45912641 45912831 -78163341 + B4 SINE B4 86 281 -11 1 935 291 259 169 48 chr9 45912877 45913043 -78163129 + Charlie13a DNA Charlie 466 651 -863 1 935 468 147 27 27 chr9 45913302 45913414 -78162758 + C-rich Low_complexity Low_complexity 4 115 0 1 935 506 259 67 0 chr9 45913436 45913571 -78162601 - B1F1 SINE Alu -5 144 1 1 935 961 228 20 10 chr9 45913848 45914052 -78162120 - B3 SINE B2 -5 211 6 1 935 23 0 0 0 chr9 45914875 45914898 -78161274 + AT_rich Low_complexity Low_complexity 1 23 0 1 935 310 232 277 0 chr9 45914913 45915025 -78161147 - B1F SINE Alu -6 143 1 1 935 324 328 0 38 chr9 45915780 45915913 -78160259 + CT-rich Low_complexity Low_complexity 2 129 0 1 935 361 227 180 9 chr9 45915921 45916032 -78160140 - B1F SINE Alu -19 130 1 1 935 423 209 132 8 chr9 45915925 45916042 -78160130 - ID_B1 SINE B4 -21 203 70 1 935 498 125 0 0 chr9 45916103 45916183 -78159989 + (TCCA)n Simple_repeat Simple_repeat 2 81 0 1 935 431 232 95 0 chr9 45916233 45916328 -78159844 + RSINE1 SINE B4 45 148 -17 1 935 333 0 0 0 chr9 45916330 45916367 -78159805 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 935 470 283 28 8 chr9 45916840 45916967 -78159205 - PB1D7 SINE Alu -22 125 2 1 935 441 280 0 10 chr9 45917973 45918074 -78158098 - RSINE1 SINE B4 -63 102 3 1 935 368 255 119 18 chr9 45918075 45918243 -78157929 - L1MB2 LINE L1 -42 6129 5945 1 935 366 218 33 33 chr9 45918714 45918804 -78157368 + PB1D7 SINE Alu 31 120 0 1 935 208 0 62 0 chr9 45919784 45919816 -78156356 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 935 438 200 0 12 chr9 45919820 45919901 -78156271 - B1F1 SINE Alu 0 149 70 1 935 491 264 9 0 chr9 45919879 45919985 -78156187 - ID_B1 SINE B4 -26 198 92 1 935 259 250 13 77 chr9 45919916 45919994 -78156178 - MT2B2 LTR ERVL -346 238 166 1 935 652 166 256 40 chr9 45920035 45920211 -78155961 + B3 SINE B2 2 215 -1 1 935 249 109 0 0 chr9 45921865 45921911 -78154261 + (TTTG)n Simple_repeat Simple_repeat 4 49 0 1 935 703 214 27 27 chr9 45921911 45922060 -78154112 - B1_Mur2 SINE Alu 0 149 1 1 935 254 295 60 43 chr9 45922059 45922176 -78153996 - PB1D9 SINE Alu -1 119 1 1 935 479 208 79 55 chr9 45922262 45922389 -78153783 - B3A SINE B2 -68 130 1 1 935 293 0 0 26 chr9 45923260 45923298 -78152874 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 935 479 227 52 105 chr9 45925702 45925772 -78150400 + MT2B LTR ERVL 95 155 -446 1 935 842 64 0 0 chr9 45925772 45925881 -78150291 + B1_Mus2 SINE Alu 1 109 -38 1 935 435 135 0 87 chr9 45925890 45926028 -78150144 + RMER17C LTR ERVK 152 277 -133 1 935 198 0 0 0 chr9 45926028 45926050 -78150122 + (A)n Simple_repeat Simple_repeat 1 22 0 1 935 306 284 0 15 chr9 45926264 45926332 -78149840 - PB1D7 SINE Alu -21 99 33 1 935 300 276 0 17 chr9 45926534 45926608 -78149564 - PB1 SINE Alu -44 73 2 1 935 525 229 154 36 chr9 45926608 45926855 -78149317 - MER33 DNA MER1_type -55 269 7 1 935 207 0 0 0 chr9 45927079 45927102 -78149070 + (T)n Simple_repeat Simple_repeat 1 23 0 1 935 1149 194 0 19 chr9 45927744 45927959 -78148213 + B3 SINE B2 1 211 -5 1 935 228 318 0 16 chr9 45928632 45928696 -78147476 - Tigger7 DNA MER2_type -7 2484 2422 1 935 461 259 18 9 chr9 45928837 45928946 -78147226 - PB1D10 SINE Alu -2 115 6 1 935 740 331 87 41 chr9 45928979 45929347 -78146825 - Tigger7 DNA MER2_type -2099 392 8 1 935 905 149 0 28 chr9 45930292 45930437 -78145735 + B1_Mur3 SINE Alu 1 141 -8 1 935 354 268 64 7 chr9 45930526 45930639 -78145533 + PB1D7 SINE Alu 8 125 -24 1 935 312 325 80 40 chr9 45930708 45930884 -78145288 + MIR SINE MIR 60 242 -20 1 935 933 118 20 20 chr9 45931718 45931865 -78144307 + B1_Mus1 SINE Alu 2 148 0 1 935 368 244 13 39 chr9 45932624 45932742 -78143430 - PB1D10 SINE Alu -3 124 1 1 935 463 261 65 0 chr9 45933327 45933465 -78142707 + B1F SINE Alu 1 147 -2 1 935 1293 99 16 10 chr9 45933563 45933756 -78142416 + B2_Mm2 SINE B2 2 195 0 1 935 207 100 0 0 chr9 45933760 45933790 -78142382 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 935 977 130 34 1 chr9 45933826 45933988 -78142184 + B2_Mm2 SINE B2 26 190 -5 1 935 237 245 0 176 chr9 45934028 45934066 -78142106 + Charlie5 DNA MER1_type 57 89 -2535 1 935 261 0 0 0 chr9 45934066 45934095 -78142077 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 1 935 696 205 214 12 chr9 45934098 45934271 -78141901 - B3 SINE B2 -8 208 1 1 935 237 245 0 176 chr9 45934271 45934347 -78141825 + Charlie5 DNA MER1_type 90 154 -2470 1 935 243 0 0 0 chr9 45935290 45935317 -78140855 + (T)n Simple_repeat Simple_repeat 1 27 0 1 935 232 238 48 48 chr9 45935688 45935772 -78140400 + L1M4b LINE L1 2362 2445 -4889 1 935 4591 194 25 5 chr9 45935869 45936718 -78139454 - Lx5 LINE L1 -3 7047 6182 1 935 642 265 7 0 chr9 45936791 45936938 -78139234 + B1_Mur1 SINE Alu 2 149 0 1 935 931 142 0 41 chr9 45937749 45937896 -78138276 - B1_Mus2 SINE Alu -5 142 2 1 935 447 294 96 30 chr9 45938101 45938386 -78137786 - B4 SINE B4 -15 277 2 1 935 211 303 15 15 chr9 45938466 45938533 -78137639 + ID4 SINE ID 6 72 -11 1 935 321 257 14 0 chr9 45938661 45938731 -78137441 + ID4_ SINE ID 2 72 -11 1 935 300 133 0 48 chr9 45939031 45939094 -78137078 + B1_Mur4 SINE Alu 90 149 -1 1 935 231 167 13 65 chr9 45939095 45939172 -78137000 + A-rich Low_complexity Low_complexity 3 75 0 1 935 309 214 32 53 chr9 45939262 45939356 -78136816 + L1M4b LINE L1 122 213 -7121 1 935 329 341 125 84 chr9 45939783 45940199 -78135973 + L1M4b LINE L1 691 1123 -6211 1 935 231 291 180 22 chr9 45940461 45940739 -78135433 + L1M4b LINE L1 1468 1789 -5545 1 935 377 285 111 49 chr9 45946512 45946748 -78129424 + L1M4b LINE L1 1857 2251 -4851 1 935 237 371 14 21 chr9 45946915 45947058 -78129114 + Charlie5 DNA MER1_type 10 151 -2473 1 935 259 289 166 25 chr9 45947138 45947301 -78128871 - MER77 LTR ERVL -7 600 415 1 935 302 188 125 0 chr9 45947326 45947390 -78128782 - MER77 LTR ERVL -234 373 302 1 935 267 103 0 0 chr9 45947404 45947443 -78128729 + (TTGG)n Simple_repeat Simple_repeat 1 39 0 1 935 180 0 0 0 chr9 45948056 45948076 -78128096 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 935 358 316 96 0 chr9 45948795 45948931 -78127241 - RSINE1 SINE B4 -14 151 3 1 935 181 194 0 27 chr9 45949221 45949258 -78126914 - L3 LINE CR1 -479 4010 3975 1 935 2020 154 151 156 chr9 45949775 45950306 -78125866 - RLTR12B LTR ERVK 0 528 1 1 935 380 20 0 20 chr9 45950617 45950667 -78125505 + (TTA)n Simple_repeat Simple_repeat 1 49 0 1 935 635 45 34 0 chr9 45950899 45950988 -78125184 + (TTCTC)n Simple_repeat Simple_repeat 3 94 0 1 935 2867 75 10 3 chr9 45950988 45951376 -78124796 - L1_Mus3 LINE L1 -1 6637 6247 1 935 860 281 52 4 chr9 45951423 45951655 -78124517 - B4A SINE B4 -13 279 37 1 935 22 0 0 0 chr9 45951678 45951700 -78124472 + AT_rich Low_complexity Low_complexity 1 22 0 1 935 301 275 88 0 chr9 45951709 45951789 -78124383 - PB1D10 SINE Alu -7 110 24 1 935 484 275 82 26 chr9 45952113 45952420 -78123752 - L1MB2 LINE L1 0 6171 5835 1 935 453 94 16 0 chr9 45952768 45952832 -78123340 + B1_Mus2 SINE Alu 83 147 0 1 935 310 210 60 36 chr9 45952872 45952956 -78123216 - PB1D10 SINE Alu 0 117 32 1 935 376 292 192 0 chr9 45953178 45953308 -78122864 - RSINE1 SINE B4 -10 155 1 1 935 251 214 81 54 chr9 45953686 45953760 -78122412 - B1F SINE Alu -56 93 18 1 935 461 251 311 0 chr9 45953821 45954090 -78122082 - MTE2b LTR MaLR 0 379 27 1 935 4616 285 65 22 chr9 45954088 45955463 -78120709 - MTE2b-int LTR MaLR -28 1552 118 1 935 1362 95 0 21 chr9 45955581 45955774 -78120398 + B2_Mm2 SINE B2 2 190 -5 1 935 322 308 21 21 chr9 45956133 45956266 -78119906 + B1F1 SINE Alu 13 140 -9 1 935 229 173 19 0 chr9 45956279 45956331 -78119841 - L1MC4 LINE L1 -862 7180 7128 1 935 275 335 110 12 chr9 45957248 45957411 -78118761 - L2a LINE L2 -11 3415 3237 1 935 991 235 14 14 chr9 45957430 45957646 -78118526 + B3 SINE B2 1 216 0 1 935 225 361 33 60 chr9 45958088 45958303 -78117869 - L2a LINE L2 -632 2787 2579 1 935 23 0 0 0 chr9 45960495 45960518 -78115654 + AT_rich Low_complexity Low_complexity 1 23 0 1 935 374 237 38 79 chr9 45961182 45961323 -78114849 - PB1D10 SINE Alu -6 143 1 1 935 332 71 18 0 chr9 45961366 45961422 -78114750 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 935 276 30 0 0 chr9 45961862 45961895 -78114277 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 935 606 91 0 0 chr9 45961895 45961993 -78114179 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 935 984 110 20 27 chr9 45961997 45962146 -78114026 - B1_Mur4 SINE Alu -2 148 1 1 935 634 180 78 0 chr9 45962906 45963034 -78113138 - B1_Mus1 SINE Alu -9 139 2 1 935 515 238 44 95 chr9 45963175 45963333 -78112839 - B3 SINE B2 0 216 67 1 935 186 189 0 0 chr9 45963628 45963665 -78112507 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 935 290 26 0 25 chr9 45964000 45964040 -78112132 + (CCCCAG)n Simple_repeat Simple_repeat 6 44 0 1 935 1222 15 0 0 chr9 45964144 45964280 -78111892 + B1_Mus2 SINE Alu 1 136 -11 1 935 261 0 0 0 chr9 45964281 45964310 -78111862 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 935 267 247 49 0 chr9 45965206 45965287 -78110885 + PB1D10 SINE Alu 33 117 0 1 935 459 282 150 24 chr9 45965307 45965514 -78110658 - MLT1D LTR MaLR -4 501 269 1 935 330 299 30 30 chr9 45965548 45965679 -78110493 - MLT1D LTR MaLR -299 206 76 1 935 234 170 0 0 chr9 45965844 45965891 -78110281 + T-rich Low_complexity Low_complexity 5 51 0 1 935 234 0 0 0 chr9 45966039 45966065 -78110107 + (T)n Simple_repeat Simple_repeat 1 26 0 1 935 1081 58 14 0 chr9 45966065 45966204 -78109968 - B1_Mm SINE Alu 0 147 7 1 935 1424 96 0 0 chr9 45966236 45966424 -78109748 + B2_Mm2 SINE B2 1 188 -7 1 935 261 0 0 0 chr9 45967032 45967061 -78109111 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 935 330 244 55 55 chr9 45967062 45967153 -78109019 - PB1D10 SINE Alu -17 100 10 1 935 382 256 33 11 chr9 45967226 45967317 -78108855 + PB1D10 SINE Alu 19 111 -6 1 935 555 313 7 29 chr9 45967537 45967675 -78108497 + RSINE1 SINE B4 13 147 -18 1 935 323 198 35 47 chr9 45967715 45967800 -78108372 - B1F2 SINE Alu -9 140 57 1 935 524 275 8 8 chr9 45967824 45967945 -78108227 + B1F1 SINE Alu 25 145 -4 1 935 267 335 85 52 chr9 45970390 45970661 -78105511 - L2a LINE L2 -10 3416 3137 1 935 284 269 128 0 chr9 45970915 45970993 -78105179 + RSINE1 SINE B4 68 155 -10 1 935 195 295 41 21 chr9 45971977 45972074 -78104098 - L2a LINE L2 -1351 2068 1970 1 935 471 263 72 98 chr9 45972158 45972352 -78103820 + B3A SINE B2 10 198 0 1 935 590 314 15 41 chr9 45972396 45972592 -78103580 + B3A SINE B2 2 192 -6 1 935 210 174 0 0 chr9 45972687 45972733 -78103439 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 935 299 231 30 99 chr9 45973048 45973149 -78103023 + ID_B1 SINE B4 121 214 -10 1 935 389 312 189 23 chr9 45973165 45973519 -78102653 + Charlie21a DNA MER1_type 81 493 -720 1 935 180 0 0 0 chr9 45973519 45973539 -78102633 + (T)n Simple_repeat Simple_repeat 1 20 0 1 935 1198 28 35 0 chr9 45973539 45973681 -78102491 - B1_Mm SINE Alu 0 147 1 1 935 35 41 0 0 chr9 45973737 45973786 -78102386 + AT_rich Low_complexity Low_complexity 1 49 0 1 935 21 57 0 0 chr9 45973926 45973961 -78102211 + AT_rich Low_complexity Low_complexity 1 35 0 1 935 222 261 188 0 chr9 45974244 45974313 -78101859 - B1F2 SINE Alu -66 83 2 1 935 225 322 47 94 chr9 45974470 45974515 -78101657 + MT2B LTR ERVL 120 158 -443 1 935 340 305 16 63 chr9 45974515 45974639 -78101533 + B1F SINE Alu 3 127 -22 1 935 872 104 8 0 chr9 45974917 45975051 -78101121 + (TTCC)n Simple_repeat Simple_repeat 2 136 0 1 935 472 305 20 66 chr9 45975052 45975203 -78100969 - B1F2 SINE Alu -5 144 1 1 935 524 142 23 124 chr9 45975241 45975370 -78100802 + B1_Mus2 SINE Alu 31 146 -1 1 935 263 50 50 0 chr9 45975370 45975410 -78100762 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 1 935 481 217 66 59 chr9 45975839 45975991 -78100181 - RSINE1 SINE B4 -8 157 5 1 935 477 84 0 0 chr9 45976001 45976072 -78100100 + (TTGG)n Simple_repeat Simple_repeat 1 71 0 1 935 183 42 0 0 chr9 45976083 45976107 -78100065 + (TGG)n Simple_repeat Simple_repeat 3 26 0 1 935 617 216 0 0 chr9 45976108 45976219 -78099953 - PB1D9 SINE Alu -8 112 2 1 935 1616 43 0 0 chr9 45976265 45976452 -78099720 + B2_Mm1t SINE B2 2 188 -5 1 935 1208 48 0 20 chr9 45976787 45976936 -78099236 + B1_Mus1 SINE Alu 2 147 -1 1 935 372 43 0 0 chr9 45977757 45977803 -78098369 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 935 517 319 88 33 chr9 45978477 45978749 -78097423 - B4 SINE B4 -4 288 2 1 935 1404 78 0 35 chr9 45978787 45978987 -78097185 - B2_Mm2 SINE B2 -1 194 2 1 935 320 296 49 0 chr9 45979122 45979203 -78096969 + PB1D10 SINE Alu 1 85 -32 1 935 408 151 4 34 chr9 45980795 45980905 -78095267 - B1_Mm SINE Alu -2 147 40 1 935 298 167 33 143 chr9 45980897 45980988 -78095184 - B2_Mm2 SINE B2 -1 194 114 1 935 224 65 0 0 chr9 45980983 45981006 -78095166 - B3 SINE B2 -181 35 5 1 935 306 0 0 0 chr9 45981014 45981048 -78095124 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 935 453 241 241 21 chr9 45981048 45981230 -78094942 - B4A SINE B4 -66 226 1 1 935 324 227 67 22 chr9 45982236 45982326 -78093846 - B1F1 SINE Alu -53 96 3 1 935 247 273 120 83 chr9 45982395 45982503 -78093669 + MT2B LTR ERVL 128 239 -362 1 935 425 244 64 80 chr9 45982431 45982556 -78093616 + B1F SINE Alu 10 132 -17 1 935 752 206 14 7 chr9 45982641 45982783 -78093389 - B1_Mur1 SINE Alu -1 148 6 1 935 295 235 38 135 chr9 45982702 45982835 -78093337 - MT2B2 LTR ERVL -344 240 121 1 935 279 0 0 0 chr9 45982960 45982991 -78093181 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 935 351 0 0 0 chr9 45982991 45983029 -78093143 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 935 467 269 17 67 chr9 45983035 45983214 -78092958 - Lx9 LINE L1 -234 7410 7241 1 935 1765 173 75 12 chr9 45983362 45983707 -78092465 - ORR1B2 LTR MaLR 0 367 1 1 935 649 296 39 17 chr9 45984498 45984672 -78091500 + B3A SINE B2 1 178 -20 1 935 1276 108 162 0 chr9 45984672 45984894 -78091278 - RMER6A LTR ERVK 0 756 499 1 935 1925 122 10 26 chr9 45984885 45985196 -78090976 - RMER6A LTR ERVK -450 306 1 1 935 1381 89 0 21 chr9 45985268 45985462 -78090710 - B2_Mm2 SINE B2 -5 190 1 1 935 281 237 0 53 chr9 45987824 45988011 -78088161 + (CAGTG)n Simple_repeat Simple_repeat 3 179 0 1 935 289 335 103 0 chr9 45988127 45988282 -78087890 - MIR SINE MIR -56 206 36 1 935 402 274 156 10 chr9 45988292 45988484 -78087688 - L2 LINE L2 -809 2610 2391 1 935 297 161 95 16 chr9 45988959 45989022 -78087150 - L1MC1 LINE L1 -23 6310 6243 1 935 474 101 0 0 chr9 45989033 45989102 -78087070 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 935 1605 269 103 8 chr9 45989106 45989691 -78086481 - L1MC1 LINE L1 -180 6153 5514 1 935 302 328 29 23 chr9 45989828 45989930 -78086242 - PB1 SINE Alu 0 117 25 1 935 361 297 0 21 chr9 45990200 45990310 -78085862 - ID4_ SINE ID -41 111 9 1 935 417 258 11 11 chr9 45990868 45990962 -78085210 - PB1D10 SINE Alu -3 114 21 1 935 641 163 225 26 chr9 45991135 45991286 -78084886 + B2_Mm2 SINE B2 1 181 -14 1 935 944 60 0 0 chr9 45991277 45991394 -78084778 - B1_Mus2 SINE Alu -2 145 29 1 935 416 137 164 10 chr9 45991621 45991723 -78084449 + B1_Mur2 SINE Alu 1 116 -11 1 935 1103 52 22 0 chr9 45991723 45991858 -78084314 + B1_Mus1 SINE Alu 1 138 -10 1 935 202 263 0 0 chr9 45992188 45992226 -78083946 + (TCG)n Simple_repeat Simple_repeat 3 40 0 1 935 264 242 67 87 chr9 45992231 45992335 -78083837 + L2a LINE L2 3324 3425 -1 1 935 586 221 44 0 chr9 45992447 45992560 -78083612 + ID_B1 SINE B4 96 213 -11 1 935 686 135 9 9 chr9 45994021 45994126 -78082046 + B1_Mur2 SINE Alu 35 139 -10 1 935 530 219 16 9 chr9 45994339 45994466 -78081706 + B1F1 SINE Alu 11 138 -11 1 935 207 0 0 0 chr9 45994472 45994495 -78081677 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 935 517 156 143 38 chr9 45994563 45994696 -78081476 - B2_Mm2 SINE B2 0 195 49 1 935 583 234 80 7 chr9 45995464 45995602 -78080570 + ID_B1 SINE B4 77 224 0 1 935 281 239 41 27 chr9 45996114 45996187 -78079985 + RSINE1 SINE B4 2 75 -90 1 935 229 323 111 0 chr9 45996421 45996520 -78079652 + PB1D10 SINE Alu 1 110 -7 1 935 482 91 13 0 chr9 45997533 45997610 -78078562 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 935 261 0 0 0 chr9 45997855 45997884 -78078288 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 1 935 886 150 15 0 chr9 45997884 45998017 -78078155 - B1_Mus2 SINE Alu -12 135 1 1 935 414 275 0 149 chr9 45998066 45998254 -78077918 + RSINE1 SINE B4 2 161 -4 1 935 347 274 103 0 chr9 45998271 45998362 -78077810 + PB1D10 SINE Alu 18 116 -1 1 935 207 88 0 0 chr9 45999661 45999695 -78076477 + (T)n Simple_repeat Simple_repeat 1 34 0 1 935 890 71 0 16 chr9 46000034 46000162 -78076010 + (TTTTC)n Simple_repeat Simple_repeat 4 129 0 1 935 366 23 0 0 chr9 46000164 46000207 -78075965 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 2 935 191 277 92 78 chr9 46000604 46000745 -78075427 + MIRb SINE MIR 111 253 -15 3 935 709 0 0 0 chr9 46000989 46001099 -78075073 - L1Md_T LINE L1 0 6582 6498 4 935 689 269 77 14 chr9 46001499 46001721 -78074451 + B4A SINE B4 55 290 -2 5 935 426 186 35 0 chr9 46003701 46003787 -78072385 + PB1D10 SINE Alu 24 112 -5 6 935 646 161 89 0 chr9 46004424 46004548 -78071624 + B1_Mur4 SINE Alu 10 144 -6 7 935 423 296 206 9 chr9 46005488 46005706 -78070466 + B4A SINE B4 30 290 -2 8 935 333 232 18 116 chr9 46005776 46005793 -78070379 + MT2B LTR ERVL 152 157 -444 9 935 627 216 28 28 chr9 46005793 46005936 -78070236 + B1_Mur3 SINE Alu 1 143 -6 1 935 207 69 0 0 chr9 46005963 46005992 -78070180 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 935 204 394 0 0 chr9 46006006 46006171 -78070001 + (TAG)n Simple_repeat Simple_repeat 3 167 0 1 936 389 238 149 30 chr9 46007035 46007169 -78069003 - RSINE1 SINE B4 -13 152 3 1 936 375 336 8 0 chr9 46007660 46007782 -78068390 + B1F2 SINE Alu 24 146 -3 1 936 328 341 16 0 chr9 46007909 46008032 -78068140 + L2 LINE L2 1974 2098 -1321 1 936 256 0 0 71 chr9 46008052 46008094 -78068078 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 936 22 35 0 0 chr9 46008865 46008894 -78067278 + AT_rich Low_complexity Low_complexity 1 29 0 1 936 1108 52 44 0 chr9 46008917 46009052 -78067120 - B1_Mus2 SINE Alu -6 141 1 1 936 588 270 64 16 chr9 46009053 46009241 -78066931 - B3A SINE B2 0 198 2 1 936 437 0 19 0 chr9 46017823 46017876 -78058296 + (TGG)n Simple_repeat Simple_repeat 1 54 0 2 936 205 268 44 44 chr9 46018324 46018414 -78057758 + MER5A DNA MER1_type 40 129 -60 2 936 684 68 0 46 chr9 46019138 46019150 -78057022 - B1_Mus2 SINE Alu -2 145 135 2 936 236 30 0 29 chr9 46019150 46019184 -78056988 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2 936 684 68 0 46 chr9 46019184 46019279 -78056893 - B1_Mus2 SINE Alu -13 134 43 2 936 245 250 0 81 chr9 46019216 46019290 -78056882 - MT2B LTR ERVL -344 257 190 2 936 717 270 58 5 chr9 46019312 46019517 -78056655 + ID_B1 SINE B4 3 218 -6 2 936 288 111 0 0 chr9 46020124 46020169 -78056003 + (CAG)n Simple_repeat Simple_repeat 3 47 0 2 936 504 0 0 0 chr9 46021138 46021194 -78054978 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 936 366 42 0 0 chr9 46021194 46021241 -78054931 + (CAGAGA)n Simple_repeat Simple_repeat 3 50 0 2 936 192 294 193 40 chr9 46021776 46021999 -78054173 + L3 LINE CR1 4171 4427 -62 2 936 317 182 49 49 chr9 46022084 46022165 -78054007 - ID4 SINE ID 0 83 3 3 936 363 252 19 57 chr9 46022721 46022826 -78053346 - PB1D10 SINE Alu -5 112 12 3 936 279 234 272 8 chr9 46022862 46022987 -78053185 + RSINE1 SINE B4 3 160 -5 3 936 346 244 11 32 chr9 46024405 46024498 -78051674 - MTEb LTR MaLR -14 365 275 3 936 389 211 100 0 chr9 46024718 46024808 -78051364 - RSINE1 SINE B4 -65 100 2 3 936 243 0 0 0 chr9 46024830 46024857 -78051315 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 936 557 237 18 0 chr9 46024870 46024984 -78051188 - RSINE1 SINE B4 -48 117 2 3 936 249 294 48 29 chr9 46024984 46025089 -78051083 - MTEb LTR MaLR -231 128 22 3 936 228 338 26 13 chr9 46025196 46025274 -78050898 - ID2 SINE ID -3 80 2 3 936 279 304 147 0 chr9 46025912 46026014 -78050158 + RSINE1 SINE B4 44 160 -5 3 936 1263 48 0 0 chr9 46026198 46026345 -78049827 + B1_Mm SINE Alu 1 147 0 3 936 189 382 118 0 chr9 46026528 46026714 -78049458 - L2 LINE L2 -835 2584 2377 4 936 231 358 48 16 chr9 46026715 46026840 -78049332 + RMER12 LTR ERVK 718 846 -476 4 936 396 338 33 7 chr9 46026783 46026935 -78049237 - RSINE1 SINE B4 -1 164 9 4 936 309 51 0 0 chr9 46029759 46029798 -78046374 + (CCCCAG)n Simple_repeat Simple_repeat 5 43 0 4 936 192 77 0 0 chr9 46031183 46031209 -78044963 + (TTA)n Simple_repeat Simple_repeat 1 26 0 4 936 258 192 28 38 chr9 46032758 46032845 -78043327 + B3A SINE B2 1 81 -135 4 936 382 264 98 21 chr9 46033922 46034017 -78042155 + B1F1 SINE Alu 5 108 -40 4 936 185 0 40 0 chr9 46034414 46034439 -78041733 + (CCCCCA)n Simple_repeat Simple_repeat 1 26 0 4 936 574 272 186 66 chr9 46034725 46035106 -78041066 - MLT1D LTR MaLR -52 453 27 4 936 332 313 53 15 chr9 46035148 46035281 -78040891 - MIR SINE MIR -96 166 29 4 936 197 309 84 102 chr9 46035415 46035581 -78040591 + MIR3 SINE MIR 44 206 -2 5 936 370 348 46 68 chr9 46035605 46035618 -78040554 - ID_B1 SINE B4 0 224 212 5 936 252 0 0 0 chr9 46035618 46035646 -78040526 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 936 370 348 46 68 chr9 46035646 46035851 -78040321 - ID_B1 SINE B4 -13 211 11 5 936 1034 101 35 12 chr9 46035943 46036114 -78040058 + B2_Mm2 SINE B2 1 175 -20 5 936 195 162 0 0 chr9 46036114 46036151 -78040021 + GA-rich Low_complexity Low_complexity 1 37 0 5 936 225 0 0 0 chr9 46037612 46037637 -78038535 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 936 189 0 0 0 chr9 46039097 46039118 -78037054 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 936 282 286 25 25 chr9 46039336 46039408 -78036764 + RSINE1 SINE B4 2 74 -91 5 936 180 0 0 0 chr9 46039408 46039428 -78036744 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 936 26 0 0 0 chr9 46039448 46039474 -78036698 + AT_rich Low_complexity Low_complexity 1 26 0 5 936 384 40 0 0 chr9 46039484 46039534 -78036638 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 936 699 250 7 27 chr9 46039537 46039685 -78036487 - RSINE1 SINE B4 -18 147 3 6 936 644 207 185 5 chr9 46039736 46039925 -78036247 - ID_B1 SINE B4 0 224 2 6 936 189 273 126 76 chr9 46040618 46040737 -78035435 - MIRc SINE MIR -49 219 95 6 936 597 28 0 0 chr9 46041458 46041529 -78034643 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 936 441 0 0 0 chr9 46041529 46041578 -78034594 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 936 191 287 168 11 chr9 46041917 46042012 -78034160 + MIRb SINE MIR 79 188 -80 6 936 213 39 0 0 chr9 46044212 46044238 -78031934 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 6 936 887 124 0 7 chr9 46044238 46044376 -78031796 - B1_Mus2 SINE Alu -2 145 9 6 936 394 178 8 137 chr9 46044271 46044395 -78031777 - MT2B LTR ERVL -337 264 157 6 936 871 309 12 20 chr9 46044408 46044662 -78031510 + B4 SINE B4 1 252 -40 7 936 1234 61 0 0 chr9 46044662 46044810 -78031362 + B1_Mus1 SINE Alu 1 148 0 7 936 214 208 53 40 chr9 46045270 46045345 -78030827 + B1F SINE Alu 74 149 0 7 936 861 209 378 22 chr9 46046101 46046379 -78029793 - MTE2a LTR MaLR -2 377 1 7 936 424 317 69 0 chr9 46047347 46047492 -78028680 + RSINE1 SINE B4 4 158 -7 7 936 446 0 19 0 chr9 46047540 46047594 -78028578 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 7 936 857 172 8 0 chr9 46047594 46047728 -78028444 - B1_Mur3 SINE Alu -13 136 2 7 936 351 65 0 0 chr9 46048194 46048240 -78027932 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 936 584 313 30 10 chr9 46050400 46050597 -78025575 - MLT2F LTR ERVL -291 372 172 7 936 239 252 27 35 chr9 46052493 46052581 -78023591 + MIRb SINE MIR 38 121 -155 7 936 270 0 0 0 chr9 46052678 46052708 -78023464 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 936 558 108 0 0 chr9 46053401 46053484 -78022688 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 936 519 260 105 13 chr9 46053487 46053639 -78022533 - B4 SINE B4 -2 290 125 8 936 879 203 0 13 chr9 46053670 46053820 -78022352 + B1_Mur1 SINE Alu 1 148 -1 8 936 600 152 0 0 chr9 46054370 46054462 -78021710 + B1_Mur4 SINE Alu 47 138 -12 8 936 222 118 0 0 chr9 46054480 46054514 -78021658 + (A)n Simple_repeat Simple_repeat 1 34 0 8 936 477 0 0 0 chr9 46054882 46054935 -78021237 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 936 349 308 151 57 chr9 46054935 46055136 -78021036 + MLT1A0 LTR MaLR 70 299 -66 8 936 1118 80 6 0 chr9 46055136 46055312 -78020860 + (GA)n Simple_repeat Simple_repeat 2 178 0 8 936 349 308 151 57 chr9 46055312 46055375 -78020797 + MLT1A0 LTR MaLR 300 359 -6 8 936 584 261 7 28 chr9 46055440 46055453 -78020719 - ID_B1 SINE B4 -2 222 212 8 936 414 0 0 0 chr9 46055453 46055499 -78020673 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 9 936 584 261 7 28 chr9 46055499 46055627 -78020545 - ID_B1 SINE B4 -13 211 84 8 936 225 217 17 0 chr9 46055640 46055700 -78020472 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 9 936 285 29 0 0 chr9 46055700 46055734 -78020438 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 936 560 297 20 33 chr9 46055766 46055916 -78020256 - RSINE1 SINE B4 0 165 18 9 936 361 192 20 10 chr9 46056055 46056155 -78020017 + GA-rich Low_complexity Low_complexity 3 103 0 9 936 547 293 7 35 chr9 46056344 46056489 -78019683 + RSINE1 SINE B4 6 146 -19 9 936 363 73 0 0 chr9 46056871 46056926 -78019246 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 9 936 234 339 53 18 chr9 46056929 46057043 -78019129 - B1F SINE Alu -31 118 1 9 936 398 301 67 8 chr9 46057043 46057122 -78019050 - B4A SINE B4 -204 88 2 9 936 310 304 43 0 chr9 46057147 46057239 -78018933 - PB1D10 SINE Alu -19 98 3 9 936 482 342 82 53 chr9 46057311 46057698 -78018474 + ORR1E LTR MaLR 1 384 0 1 936 826 201 31 16 chr9 46058365 46058557 -78017615 - Lx4B LINE L1 0 7058 6864 1 936 183 42 0 0 chr9 46058584 46058608 -78017564 + (TGG)n Simple_repeat Simple_repeat 3 26 0 1 936 295 241 111 33 chr9 46058624 46058714 -78017458 - B1_Mur4 SINE Alu -51 98 2 1 936 1171 206 9 0 chr9 46058743 46058957 -78017215 - B3 SINE B2 0 216 1 1 936 995 208 120 0 chr9 46058981 46059173 -78016999 - B3 SINE B2 0 216 2 1 936 1205 51 6 28 chr9 46059219 46059400 -78016772 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1 936 989 131 0 27 chr9 46059400 46059549 -78016623 - B1_Mus1 SINE Alu -3 145 1 1 936 396 306 22 7 chr9 46059853 46059991 -78016181 - L1M3 LINE L1 -453 5727 5588 1 936 538 315 40 22 chr9 46060049 46060274 -78015898 - B4A SINE B4 -8 284 56 1 936 1200 42 0 0 chr9 46060274 46060418 -78015754 + B2_Mm2 SINE B2 2 145 -50 1 936 555 16 0 0 chr9 46060418 46060482 -78015690 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 936 810 91 0 9 chr9 46060483 46060594 -78015578 - B1_Mm SINE Alu -2 145 36 1 936 313 260 42 112 chr9 46060526 46060669 -78015503 - MT2B LTR ERVL -343 258 126 1 936 243 0 0 0 chr9 46060677 46060704 -78015468 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 1 936 579 205 277 0 chr9 46060707 46060866 -78015306 - B3 SINE B2 -7 209 7 1 936 290 321 12 0 chr9 46060963 46061044 -78015128 - ID_B1 SINE B4 -20 204 123 1 936 204 178 9 0 chr9 46061536 46061582 -78014590 + L2a LINE L2 3389 3424 -2 1 936 718 298 104 52 chr9 46061755 46062063 -78014109 + MLT1F LTR MaLR 88 411 -137 1 936 210 37 0 0 chr9 46062146 46062173 -78013999 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 936 1148 63 7 7 chr9 46062173 46062317 -78013855 - B1_Mus2 SINE Alu -3 144 1 1 936 23 33 0 0 chr9 46062628 46062658 -78013514 + AT_rich Low_complexity Low_complexity 1 30 0 1 936 616 190 8 72 chr9 46062860 46062985 -78013187 + RSINE1 SINE B4 3 119 -46 1 936 258 105 0 0 chr9 46062986 46063024 -78013148 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 936 744 260 129 20 chr9 46063050 46063305 -78012867 + B4A SINE B4 2 284 -8 1 936 354 23 0 0 chr9 46063306 46063349 -78012823 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 936 315 0 0 0 chr9 46063350 46063385 -78012787 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 936 265 205 22 124 chr9 46063531 46063620 -78012552 + PB1D9 SINE Alu 36 115 -5 1 936 236 30 0 29 chr9 46063620 46063654 -78012518 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 936 1455 70 11 0 chr9 46063748 46063935 -78012237 + B2_Mm1a SINE B2 2 190 -3 1 936 256 217 17 0 chr9 46064133 46064193 -78011979 - ID4_ SINE ID -19 64 4 1 936 365 224 0 15 chr9 46064233 46064301 -78011871 + PB1 SINE Alu 56 122 -5 1 936 775 200 7 0 chr9 46064318 46064458 -78011714 + B1_Mur1 SINE Alu 9 149 0 1 936 198 0 0 0 chr9 46064657 46064679 -78011493 + (T)n Simple_repeat Simple_repeat 1 22 0 1 936 195 294 151 11 chr9 46065446 46065539 -78010633 + MIRb SINE MIR 94 199 -69 1 936 421 278 159 0 chr9 46066270 46066396 -78009776 + B3 SINE B2 71 216 0 1 936 772 169 42 14 chr9 46066404 46066548 -78009624 + B1_Mur1 SINE Alu 2 149 0 1 936 26 0 0 0 chr9 46066548 46066574 -78009598 + AT_rich Low_complexity Low_complexity 1 26 0 1 936 420 71 0 0 chr9 46066574 46066630 -78009542 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1 936 655 226 0 0 chr9 46067058 46067173 -78008999 - B1_Mur4 SINE Alu -35 115 1 1 936 242 182 17 83 chr9 46067212 46067272 -78008900 - MIR SINE MIR -89 173 118 1 936 809 258 30 5 chr9 46067446 46067649 -78008523 - ID_B1 SINE B4 -15 209 2 1 936 347 267 126 41 chr9 46067759 46067968 -78008204 - B4 SINE B4 -24 268 3 1 936 264 237 0 48 chr9 46068362 46068424 -78007748 - MTE-int LTR MaLR -50 1530 1472 1 936 210 250 0 0 chr9 46068429 46068485 -78007687 + CT-rich Low_complexity Low_complexity 2 57 0 1 936 186 43 0 0 chr9 46068486 46068509 -78007663 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 936 1006 140 0 0 chr9 46068511 46068654 -78007518 - B1_Mus1 SINE Alu -1 147 5 1 936 619 280 83 57 chr9 46068673 46068788 -78007384 - MTE-int LTR MaLR -121 1459 1354 1 936 1121 72 0 7 chr9 46068788 46068927 -78007245 + B1_Mm SINE Alu 1 138 -9 1 936 242 29 29 0 chr9 46068927 46068962 -78007210 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 936 621 317 191 58 chr9 46068962 46069508 -78006664 - MTE-int LTR MaLR -227 1353 722 1 936 325 216 40 13 chr9 46069483 46069558 -78006614 - PB1D9 SINE Alu -34 86 10 1 936 638 192 0 24 chr9 46069578 46069701 -78006471 - PB1D9 SINE Alu 0 120 1 1 936 422 228 0 21 chr9 46069992 46070086 -78006086 + MT2A LTR ERVL 1 92 -441 1 936 366 91 0 35 chr9 46070117 46070174 -78005998 - B2_Mm2 SINE B2 -94 101 47 1 936 1345 91 11 0 chr9 46070222 46070398 -78005774 - B2_Mm1t SINE B2 -14 179 2 1 936 1158 224 72 34 chr9 46070398 46070800 -78005372 + MT2A LTR ERVL 60 601 0 1 936 331 335 45 28 chr9 46070841 46071019 -78005153 + L1MC LINE L1 5290 5470 -2412 1 936 567 75 21 11 chr9 46071092 46071187 -78004985 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 936 229 209 0 0 chr9 46071187 46071230 -78004942 - B1F SINE Alu -105 44 2 1 936 225 0 0 0 chr9 46071254 46071279 -78004893 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 936 339 397 83 11 chr9 46071280 46071461 -78004711 + L1MC LINE L1 5515 5708 -2174 1 936 948 166 0 0 chr9 46071661 46071800 -78004372 + B1_Mur2 SINE Alu 1 139 -10 1 936 937 189 120 5 chr9 46071831 46072022 -78004150 - B3 SINE B2 -3 213 1 1 936 422 236 219 8 chr9 46072116 46072244 -78003928 + RSINE1 SINE B4 5 159 -6 1 936 214 147 0 0 chr9 46072264 46072298 -78003874 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 1 936 341 236 63 63 chr9 46072482 46072577 -78003595 + PB1D10 SINE Alu 19 113 -7 1 936 1110 85 0 0 chr9 46072649 46072790 -78003382 - B1_Mus2 SINE Alu -5 142 2 1 936 253 362 65 7 chr9 46073043 46073196 -78002976 - HAL1 LINE L1 -2340 167 6 1 936 334 335 34 10 chr9 46073222 46073430 -78002742 - L1MEe LINE L1 -4137 717 505 1 936 416 73 0 22 chr9 46073627 46073693 -78002479 - B2_Mm2 SINE B2 -107 109 47 1 936 956 100 19 51 chr9 46073721 46073879 -78002293 - B2_Mm1t SINE B2 -14 179 27 1 936 266 0 29 0 chr9 46073879 46073913 -78002259 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 936 390 20 0 0 chr9 46073922 46073972 -78002200 - B1_Mur4 SINE Alu -2 148 99 1 936 966 71 0 0 chr9 46073972 46074098 -78002074 - B1_Mus2 SINE Alu -21 126 1 1 936 276 81 0 0 chr9 46074101 46074138 -78002034 - B2_Mm2 SINE B2 -157 38 2 1 936 881 235 9 40 chr9 46074381 46074603 -78001569 + B3 SINE B2 1 215 -1 1 936 1644 183 108 34 chr9 46075017 46075425 -78000747 - RMER10A LTR ERVL -2 440 3 1 936 256 392 10 0 chr9 46075510 46075612 -78000560 - ID_B1 SINE B4 -92 132 30 1 936 508 186 39 0 chr9 46075688 46075794 -78000378 - PB1D7 SINE Alu 0 120 11 1 936 240 246 0 34 chr9 46075744 46075803 -78000369 - B4A SINE B4 -147 145 89 1 936 620 276 8 0 chr9 46079992 46080119 -77996053 - B1_Mur1 SINE Alu -5 144 17 1 936 1455 53 0 40 chr9 46080641 46080839 -77995333 - B2_Mm1a SINE B2 -2 191 2 1 936 1086 91 0 0 chr9 46080955 46081098 -77995074 - B2_Mm2 SINE B2 -51 144 2 1 936 243 0 0 0 chr9 46082405 46082432 -77993740 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 936 1046 76 0 0 chr9 46082439 46082570 -77993602 - B1_Mus1 SINE Alu -17 131 1 1 936 204 309 36 24 chr9 46082628 46082711 -77993461 - MIRc SINE MIR -125 143 60 1 936 180 0 0 0 chr9 46084812 46084832 -77991340 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 1 936 189 107 0 0 chr9 46085468 46085496 -77990676 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1 936 214 197 279 0 chr9 46086577 46086638 -77989534 + PB1D7 SINE Alu 34 111 -9 1 936 1156 62 7 0 chr9 46086709 46086855 -77989317 + B1_Mus2 SINE Alu 1 147 0 1 936 1243 62 0 0 chr9 46086956 46087102 -77989070 - B1_Mus1 SINE Alu -1 147 2 1 936 230 218 90 75 chr9 46087189 46087323 -77988849 + MER2 DNA MER2_type 75 210 -135 1 936 370 268 0 67 chr9 46087299 46087357 -77988815 - PB1D10 SINE Alu 0 117 64 1 936 315 0 0 0 chr9 46087357 46087392 -77988780 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 936 370 278 9 61 chr9 46087392 46087454 -77988718 - PB1D10 SINE Alu -83 66 2 1 936 259 292 89 11 chr9 46088250 46088340 -77987832 + PB1D10 SINE Alu 13 109 -8 1 936 521 257 35 0 chr9 46088744 46088857 -77987315 - PB1D10 SINE Alu 0 117 1 1 936 214 355 62 31 chr9 46088775 46088871 -77987301 - B4A SINE B4 -119 173 75 1 936 294 29 0 0 chr9 46088949 46088984 -77987188 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 936 714 152 102 16 chr9 46089989 46090116 -77986056 + B1_Mur4 SINE Alu 12 149 -1 1 936 224 295 0 16 chr9 46090268 46090330 -77985842 + PB1D10 SINE Alu 31 91 -26 1 936 295 270 53 26 chr9 46090350 46090426 -77985746 + ID SINE ID 6 83 -141 1 936 507 123 28 19 chr9 46091549 46091657 -77984515 + CT-rich Low_complexity Low_complexity 4 112 0 1 936 353 342 17 0 chr9 46092273 46092390 -77983782 + MLT1C LTR MaLR 65 183 -284 1 936 276 295 22 11 chr9 46092394 46092483 -77983689 + MIRb SINE MIR 17 106 -162 1 936 1291 34 0 0 chr9 46092496 46092643 -77983529 + B1_Mus2 SINE Alu 1 147 0 2 936 411 277 164 29 chr9 46092861 46093069 -77983103 - MER2 DNA MER2_type -84 261 26 2 936 294 274 10 21 chr9 46093133 46093230 -77982942 + PB1D10 SINE Alu 1 96 -21 2 936 4440 20 0 0 chr9 46093410 46093903 -77982269 + MT2_Mm LTR ERVL 1 493 0 2 936 703 199 81 62 chr9 46094068 46094229 -77981943 + RSINE1 SINE B4 2 165 0 2 936 698 64 85 0 chr9 46094262 46094356 -77981816 + B2_Mm2 SINE B2 1 102 -93 2 936 525 249 212 21 chr9 46094648 46094672 -77981500 + Tigger5 DNA MER2_type 1 26 -2380 2 936 252 0 0 0 chr9 46094681 46094709 -77981463 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 936 1190 68 0 7 chr9 46094709 46094847 -77981325 - B1_Mus2 SINE Alu -9 138 1 2 936 525 249 212 21 chr9 46094847 46095011 -77981161 + Tigger5 DNA MER2_type 27 225 -2181 2 936 392 265 0 46 chr9 46096742 46096829 -77979343 + RSINE1 SINE B4 83 165 0 2 936 1461 93 0 0 chr9 46097111 46097305 -77978867 - B2_Mm2 SINE B2 0 195 2 2 936 1598 27 32 0 chr9 46097317 46097504 -77978668 - B2_Mm1a SINE B2 0 193 1 2 936 298 212 76 0 chr9 46098067 46098133 -77978039 - ID2 SINE ID -10 73 3 2 936 268 202 183 43 chr9 46098743 46098763 -77977409 - PB1D10 SINE Alu -1 116 11 2 936 268 214 41 41 chr9 46098763 46098836 -77977336 - ID_B1 SINE B4 -60 164 92 2 936 247 357 62 23 chr9 46098875 46099004 -77977168 + MIRc SINE MIR 13 146 -122 2 936 262 203 0 132 chr9 46099004 46099072 -77977100 + ID_B1 SINE B4 166 224 0 2 936 195 167 0 0 chr9 46100675 46100717 -77975455 + T-rich Low_complexity Low_complexity 1 42 0 2 936 223 207 51 17 chr9 46100722 46100781 -77975391 - PB1D7 SINE Alu -7 113 53 2 936 1127 70 0 14 chr9 46101108 46101253 -77974919 - B1_Mus1 SINE Alu -1 147 5 2 936 23 54 0 0 chr9 46101264 46101301 -77974871 + AT_rich Low_complexity Low_complexity 1 37 0 2 936 859 101 0 0 chr9 46101306 46101425 -77974747 - B2_Mm2 SINE B2 -68 127 9 2 936 664 219 25 0 chr9 46101685 46101804 -77974368 + RSINE1 SINE B4 11 132 -33 2 936 1170 117 0 0 chr9 46101824 46102003 -77974169 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 936 739 267 219 40 chr9 46102021 46102432 -77973740 - Charlie1a DNA MER1_type -39 1416 930 2 936 634 163 132 0 chr9 46102432 46102561 -77973611 - B1_Mur1 SINE Alu 0 149 4 2 936 739 267 219 40 chr9 46102561 46102585 -77973587 - Charlie1a DNA MER1_type -526 929 888 2 936 615 220 250 0 chr9 46102585 46102753 -77973419 - B3 SINE B2 -4 212 3 2 936 739 267 219 40 chr9 46102753 46102890 -77973282 - Charlie1a DNA MER1_type -568 887 741 2 936 357 296 86 0 chr9 46103112 46103274 -77972898 - L1MEb LINE L1 -5205 865 690 2 936 550 271 46 15 chr9 46103312 46103443 -77972729 - B1F1 SINE Alu -14 135 1 2 936 291 54 0 0 chr9 46104256 46104293 -77971879 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 936 25 31 0 0 chr9 46104326 46104358 -77971814 + AT_rich Low_complexity Low_complexity 1 32 0 2 936 183 42 0 0 chr9 46105262 46105286 -77970886 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2 936 465 296 93 44 chr9 46105424 46105458 -77970714 - B3 SINE B2 0 216 182 2 936 507 201 275 6 chr9 46105458 46105618 -77970554 - B3 SINE B2 -11 205 3 2 936 579 278 68 19 chr9 46105618 46105788 -77970384 - B3A SINE B2 -35 181 2 2 936 763 152 129 0 chr9 46106303 46106435 -77969737 - B1_Mur4 SINE Alu -1 149 1 2 936 317 277 246 5 chr9 46107611 46107814 -77968358 - L1M3 LINE L1 -542 5638 5387 2 936 185 211 0 19 chr9 46107875 46107928 -77968244 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 2 936 813 197 13 13 chr9 46107930 46108079 -77968093 - B1_Mur2 SINE Alu 0 149 1 2 936 252 212 13 120 chr9 46108115 46108190 -77967982 + ID4_ SINE ID 3 69 -14 2 936 320 274 52 10 chr9 46108348 46108444 -77967728 + PB1D10 SINE Alu 18 117 0 2 936 1383 80 0 60 chr9 46108579 46108779 -77967393 - B2_Mm2 SINE B2 -6 189 2 2 936 325 149 0 0 chr9 46108865 46108912 -77967260 + RSINE1 SINE B4 46 92 -73 2 936 241 298 93 58 chr9 46108985 46109124 -77967048 + B4A SINE B4 83 226 -66 2 936 712 187 229 6 chr9 46109421 46109604 -77966568 + ID_B1 SINE B4 1 224 0 2 936 767 242 6 6 chr9 46109820 46109982 -77966190 + RSINE1 SINE B4 4 165 0 2 936 822 207 0 7 chr9 46110446 46110592 -77965580 + B1_Mur2 SINE Alu 5 149 0 2 936 1269 61 0 17 chr9 46110803 46111038 -77965134 + (TG)n Simple_repeat Simple_repeat 1 231 0 2 936 462 316 38 32 chr9 46111038 46111195 -77964977 - RSINE1 SINE B4 -6 159 2 2 936 288 298 230 16 chr9 46111282 46111297 -77964875 - B4A SINE B4 -46 246 94 2 936 655 173 18 9 chr9 46111297 46111408 -77964764 - PB1D7 SINE Alu 0 120 9 2 936 286 235 17 155 chr9 46111307 46111423 -77964749 - MT2B2 LTR ERVL -326 258 159 2 936 235 236 0 18 chr9 46111788 46111827 -77964345 + polypyrimidine Low_complexity Low_complexity 20 58 0 2 936 182 65 65 0 chr9 46111827 46111858 -77964314 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 2 936 235 236 0 18 chr9 46111858 46111874 -77964298 + polypyrimidine Low_complexity Low_complexity 4 19 0 2 936 448 220 147 0 chr9 46111874 46111983 -77964189 - ID_B1 SINE B4 -16 208 84 2 936 329 242 77 0 chr9 46111985 46112076 -77964096 - PB1D7 SINE Alu -1 119 22 2 936 511 285 40 17 chr9 46112514 46112689 -77963483 + B3A SINE B2 2 180 -18 2 936 254 235 0 0 chr9 46112690 46112741 -77963431 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 936 200 34 0 33 chr9 46112743 46112773 -77963399 + (TAA)n Simple_repeat Simple_repeat 1 29 0 2 936 748 118 39 23 chr9 46112931 46113061 -77963111 + B3 SINE B2 80 211 -5 2 936 564 105 12 0 chr9 46113450 46113536 -77962636 - B1_Mur4 SINE Alu -13 137 51 2 936 698 240 113 20 chr9 46113547 46113751 -77962421 - ID_B1 SINE B4 0 224 2 2 936 24 0 0 0 chr9 46114137 46114161 -77962011 + AT_rich Low_complexity Low_complexity 1 24 0 2 936 308 248 36 82 chr9 46115039 46115149 -77961023 - B1F SINE Alu -41 108 4 2 936 447 220 9 48 chr9 46115057 46115159 -77961013 - ID_B1 SINE B4 -53 171 74 2 936 4955 142 101 31 chr9 46115159 46115993 -77960179 + RLTR25A LTR ERVK 1 918 -185 2 936 369 0 0 0 chr9 46115993 46116034 -77960138 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 936 4955 142 101 31 chr9 46116034 46116230 -77959942 + RLTR25A LTR ERVK 919 1103 0 2 936 227 234 0 0 chr9 46116240 46116287 -77959885 - ID SINE ID -169 55 9 2 936 1190 77 10 81 chr9 46116308 46116506 -77959666 - B2_Mm2 SINE B2 -10 185 2 2 936 228 35 0 0 chr9 46117052 46117081 -77959091 + (CTG)n Simple_repeat Simple_repeat 1 29 0 2 936 180 336 178 0 chr9 46117173 46117319 -77958853 + MIRb SINE MIR 78 249 -19 2 936 416 91 15 0 chr9 46117750 46117816 -77958356 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 2 936 838 159 6 6 chr9 46117844 46118009 -77958163 + CT-rich Low_complexity Low_complexity 2 166 0 2 936 688 246 73 5 chr9 46118018 46118222 -77957950 - ID_B1 SINE B4 -3 221 4 2 936 1291 67 17 11 chr9 46118639 46118820 -77957352 - B2_Mm2 SINE B2 -12 183 2 2 936 243 0 0 0 chr9 46119470 46119497 -77956675 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 936 269 51 0 25 chr9 46119514 46119554 -77956618 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 936 488 258 12 59 chr9 46120252 46120421 -77955751 - RSINE1 SINE B4 -2 163 3 2 936 333 0 0 0 chr9 46120456 46120493 -77955679 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 936 534 189 0 0 chr9 46120493 46120588 -77955584 - RSINE1 SINE B4 -43 122 28 2 936 469 250 0 0 chr9 46120595 46120695 -77955477 - ID_B1 SINE B4 -38 186 87 2 936 195 351 108 76 chr9 46121369 46121646 -77954526 + L2b LINE L2 3082 3367 -8 2 936 574 230 0 16 chr9 46121712 46121840 -77954332 + B1F SINE Alu 3 128 -21 2 936 243 0 0 0 chr9 46122640 46122667 -77953505 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 936 909 246 98 12 chr9 46125289 46125544 -77950628 - B4 SINE B4 -14 278 2 2 936 248 77 26 0 chr9 46125554 46125593 -77950579 + (TTTTC)n Simple_repeat Simple_repeat 1 40 0 2 936 1091 124 0 6 chr9 46125601 46125779 -77950393 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 2 936 1153 48 0 13 chr9 46125779 46125919 -77950253 - B1_Mus1 SINE Alu -8 140 1 2 936 298 189 24 12 chr9 46126104 46126186 -77949986 - B1_Mus1 SINE Alu -27 122 40 2 936 1089 80 0 0 chr9 46126854 46126992 -77949180 + B1_Mus2 SINE Alu 1 138 -9 2 936 2192 86 3 28 chr9 46127872 46128068 -77948104 - ORR1A2 LTR MaLR -8 319 131 2 936 4472 85 29 56 chr9 46128068 46128837 -77947335 + RMER17A LTR ERVK 1 748 -3 2 936 2192 86 3 28 chr9 46128837 46128963 -77947209 - ORR1A2 LTR MaLR -197 130 5 2 936 1763 210 25 25 chr9 46129892 46130298 -77945874 + MTD LTR MaLR 12 417 -2 2 936 554 269 91 65 chr9 46131951 46132274 -77943898 - RLTR18B LTR ERVK -271 345 3 2 936 607 84 21 0 chr9 46132503 46132598 -77943574 + (TC)n Simple_repeat Simple_repeat 2 98 0 2 936 511 162 123 41 chr9 46132607 46132729 -77943443 - B1_Mus1 SINE Alu -16 132 1 2 936 286 291 12 12 chr9 46132729 46132799 -77943373 + polypyrimidine Low_complexity Low_complexity 5 75 0 2 936 432 239 54 18 chr9 46132809 46132920 -77943252 - PB1D7 SINE Alu -5 115 1 2 936 218 299 117 0 chr9 46134115 46134192 -77941980 - MIRc SINE MIR -103 173 85 2 936 425 301 43 152 chr9 46134195 46134379 -77941793 + B3A SINE B2 3 166 -32 2 936 477 90 0 0 chr9 46134379 46134446 -77941726 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 936 398 236 101 83 chr9 46134446 46134473 -77941699 + B3 SINE B2 164 190 -5 2 936 982 127 0 13 chr9 46134633 46134785 -77941387 + B1_Mur4 SINE Alu 1 150 0 3 936 346 250 73 18 chr9 46134905 46135015 -77941157 + RSINE1 SINE B4 2 117 -48 3 936 411 145 0 0 chr9 46135104 46135173 -77940999 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 936 435 259 99 142 chr9 46135243 46135405 -77940767 + RSINE1 SINE B4 1 155 -10 3 936 23 0 0 0 chr9 46135418 46135441 -77940731 + AT_rich Low_complexity Low_complexity 1 23 0 3 936 1181 55 0 0 chr9 46135448 46135594 -77940578 - B1_Mus2 SINE Alu 0 147 2 3 936 324 0 0 0 chr9 46135594 46135630 -77940542 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3 936 248 279 14 62 chr9 46136349 46136494 -77939678 + CT-rich Low_complexity Low_complexity 5 142 0 3 936 516 261 48 27 chr9 46136494 46136640 -77939532 - ID_B1 SINE B4 -8 216 68 3 937 624 261 36 52 chr9 46138078 46138199 -77937973 - B3A SINE B2 0 198 87 3 937 273 29 0 0 chr9 46138199 46138233 -77937939 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 3 937 624 261 36 52 chr9 46138233 46138305 -77937867 - B3A SINE B2 -112 86 8 3 937 208 252 136 25 chr9 46138590 46138708 -77937464 + MIRb SINE MIR 118 248 -20 3 937 724 292 11 29 chr9 46138888 46139137 -77937035 - MTE2b LTR MaLR -30 349 127 3 937 756 208 6 25 chr9 46139620 46139778 -77936394 - MTE2b LTR MaLR -224 155 1 3 937 585 328 41 27 chr9 46139831 46140126 -77936046 + LTR73 LTR ERV1 151 449 -123 3 937 2489 38 0 15 chr9 46140172 46140496 -77935676 - L1Md_F2 LINE L1 0 6582 6264 3 937 763 260 40 69 chr9 46140687 46140964 -77935208 - B4A SINE B4 -23 269 1 3 937 396 0 0 0 chr9 46141123 46141167 -77935005 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 937 553 219 140 0 chr9 46141228 46141392 -77934780 - B3A SINE B2 -11 187 1 3 937 569 269 78 28 chr9 46141406 46141586 -77934586 - B4 SINE B4 -100 192 4 3 937 631 167 9 9 chr9 46141586 46141701 -77934471 - B1_Mur2 SINE Alu -1 148 34 3 937 1095 61 3 39 chr9 46141740 46142046 -77934126 + (TTTC)n Simple_repeat Simple_repeat 1 294 0 3 937 243 0 0 0 chr9 46142054 46142081 -77934091 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 937 387 198 43 0 chr9 46142081 46142170 -77934002 - B1F SINE Alu -6 114 21 3 937 473 214 79 18 chr9 46142177 46142291 -77933881 - RSINE1 SINE B4 -43 122 2 3 937 836 217 51 9 chr9 46143363 46143577 -77932595 - ID_B1 SINE B4 0 224 2 3 937 252 0 0 0 chr9 46144090 46144118 -77932054 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 937 2192 192 93 63 chr9 46144122 46144660 -77931512 - Lx9 LINE L1 -6 7638 7068 3 937 1191 41 0 0 chr9 46144660 46144806 -77931366 - B1_Mm SINE Alu 0 147 2 3 937 2192 192 93 63 chr9 46144806 46144872 -77931300 - Lx9 LINE L1 -577 7067 7016 3 937 478 245 0 0 chr9 46145376 46145474 -77930698 - B1_Mur2 SINE Alu -51 98 1 3 937 240 245 19 0 chr9 46147017 46147070 -77929102 + B4A SINE B4 91 144 -148 3 937 292 170 19 0 chr9 46147514 46147567 -77928605 + B1_Mus2 SINE Alu 1 54 -93 3 937 273 284 0 22 chr9 46147576 46147666 -77928506 + GA-rich Low_complexity Low_complexity 5 92 0 3 937 660 200 0 0 chr9 46147678 46147858 -77928314 + GA-rich Low_complexity Low_complexity 1 180 0 3 937 749 193 0 5 chr9 46147869 46148660 -77927512 + GA-rich Low_complexity Low_complexity 1 786 0 3 937 271 134 43 92 chr9 46148732 46148821 -77927351 + B1F2 SINE Alu 42 129 -21 3 937 1040 194 134 27 chr9 46148985 46149120 -77927052 - Lx7 LINE L1 -1 7695 7546 3 937 429 20 0 0 chr9 46149120 46149170 -77927002 + (TAAAA)n Simple_repeat Simple_repeat 4 53 0 3 937 1040 194 134 27 chr9 46149170 46149326 -77926846 - Lx7 LINE L1 -151 7545 7373 3 937 252 0 0 0 chr9 46149337 46149365 -77926807 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 3 937 4052 199 54 24 chr9 46149417 46150307 -77925865 - Lx7 LINE L1 -1151 6545 5629 3 937 15332 121 43 68 chr9 46150334 46151119 -77925053 - L1_Mur3 LINE L1 -1594 4286 3525 3 937 406 163 22 34 chr9 46151119 46151208 -77924964 + PB1D9 SINE Alu 33 120 0 3 937 15332 121 43 68 chr9 46151208 46152113 -77924059 - L1_Mur3 LINE L1 -1594 3524 2644 3 937 189 0 0 0 chr9 46152113 46152134 -77924038 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 937 15332 121 43 68 chr9 46152134 46152665 -77923507 - L1_Mur3 LINE L1 -3237 2643 2074 3 937 297 0 0 0 chr9 46152665 46152698 -77923474 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 937 15332 146 52 53 chr9 46152698 46154432 -77921740 - L1_Mur3 LINE L1 -3807 2073 300 3 937 1892 142 6 6 chr9 46154713 46155031 -77921141 + ORR1B1 LTR MaLR 77 394 0 3 937 1212 214 156 14 chr9 46155272 46155637 -77920535 + MTD LTR MaLR 3 419 0 3 937 1387 124 4 22 chr9 46155727 46155957 -77920215 + URR1A DNA MER1_type 1 226 0 3 937 1138 68 0 0 chr9 46156529 46156676 -77919496 - B1_Mus1 SINE Alu 0 148 2 3 937 296 292 39 16 chr9 46157126 46157250 -77918922 - L2a LINE L2 -35 3391 3221 3 937 638 261 77 5 chr9 46158305 46158513 -77917659 - ID_B1 SINE B4 0 224 2 3 937 366 245 26 16 chr9 46159327 46159648 -77916524 + GA-rich Low_complexity Low_complexity 1 324 0 3 937 511 255 21 28 chr9 46159724 46159869 -77916303 + MamRep38 DNA hAT 3 146 -149 3 937 875 255 10 10 chr9 46161928 46162122 -77914050 - ID_B1 SINE B4 -17 207 14 3 937 1476 224 122 0 chr9 46162593 46162847 -77913325 + Lx6 LINE L1 6459 6882 -578 3 937 297 0 0 0 chr9 46162847 46162880 -77913292 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 937 2024 252 17 25 chr9 46162880 46163361 -77912811 + Lx6 LINE L1 6567 7399 -61 3 937 246 32 0 0 chr9 46163361 46163392 -77912780 + (GGAGA)n Simple_repeat Simple_repeat 2 32 0 3 937 250 281 80 3 chr9 46163556 46163686 -77912486 + MIRb SINE MIR 98 244 -24 3 937 355 262 0 16 chr9 46163752 46163805 -77912367 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 937 3301 25 2 5 chr9 46163805 46164202 -77911970 + MTA_Mm LTR MaLR 1 396 0 3 937 8840 40 2 0 chr9 46164202 46165298 -77910874 + MTA_Mm-int LTR MaLR 1 1098 0 3 937 3168 43 2 8 chr9 46165298 46165696 -77910476 + MTA_Mm LTR MaLR 1 396 0 3 937 355 279 0 11 chr9 46165696 46165886 -77910286 + (TG)n Simple_repeat Simple_repeat 1 187 0 3 937 413 311 65 13 chr9 46165890 46166043 -77910129 - RSINE1 SINE B4 0 165 5 3 937 3115 23 3 0 chr9 46166043 46166429 -77909743 + MTA_Mm LTR MaLR 10 396 0 3 937 221 114 90 8 chr9 46166465 46166598 -77909574 + (TA)n Simple_repeat Simple_repeat 2 145 0 3 937 903 205 149 90 chr9 46167098 46167441 -77908731 + MTEa LTR MaLR 17 379 0 3 937 732 183 0 0 chr9 46167658 46167789 -77908383 - ORR1C1 LTR MaLR -241 137 7 3 937 2252 159 36 0 chr9 46168014 46168378 -77907794 - ORR1C1 LTR MaLR -1 377 1 3 937 304 214 50 30 chr9 46168450 46168551 -77907621 - MLT1B LTR MaLR -140 250 148 3 937 1034 229 129 77 chr9 46168565 46168905 -77907267 + MTE2a LTR MaLR 19 376 -3 3 937 481 252 45 22 chr9 46168907 46169041 -77907131 + B1F SINE Alu 1 137 -12 3 937 601 213 93 22 chr9 46169047 46169186 -77906986 - B1_Mur1 SINE Alu 0 149 1 3 937 464 160 0 0 chr9 46170093 46170168 -77906004 - MER63D DNA AcHobo -679 382 308 3 937 1227 77 0 0 chr9 46170308 46170546 -77905626 + (GA)n Simple_repeat Simple_repeat 1 238 0 3 937 264 30 0 0 chr9 46170546 46170579 -77905593 + (TCTG)n Simple_repeat Simple_repeat 1 33 0 3 937 218 314 245 0 chr9 46171342 46171479 -77904693 - MIR SINE MIR -42 226 51 3 937 307 331 32 0 chr9 46171678 46171802 -77904370 + MIRc SINE MIR 68 195 -73 3 937 1139 206 94 4 chr9 46171887 46172236 -77903936 - MTD LTR MaLR 0 419 1 3 937 488 271 2 0 chr9 46172315 46172747 -77903425 + (CA)n Simple_repeat Simple_repeat 1 432 0 3 937 485 162 19 0 chr9 46172750 46172855 -77903317 + (CATA)n Simple_repeat Simple_repeat 4 110 0 3 937 265 348 0 0 chr9 46173016 46173085 -77903087 - PB1D10 SINE Alu -21 96 28 3 937 1069 179 75 0 chr9 46173278 46173479 -77902693 - B3 SINE B2 0 216 1 3 937 310 331 164 28 chr9 46173525 46173982 -77902190 - L1M5 LINE L1 -1212 4934 4416 3 937 262 306 14 14 chr9 46174047 46174120 -77902052 - B4A SINE B4 -8 284 212 3 937 581 255 72 26 chr9 46174149 46174302 -77901870 - RSINE1 SINE B4 -3 162 3 3 937 522 266 105 37 chr9 46174302 46174493 -77901679 - B4A SINE B4 -60 232 29 3 937 1482 201 207 32 chr9 46174518 46174924 -77901248 - RLTR33 LTR ERVK -27 651 175 3 937 338 279 137 49 chr9 46174999 46175108 -77901064 - L1MEf LINE L1 -1793 4353 4251 3 937 1381 79 10 16 chr9 46175108 46175301 -77900871 - B2_Mm1t SINE B2 0 193 2 3 937 338 279 137 49 chr9 46175301 46175519 -77900653 - L1MEf LINE L1 -1896 4250 3998 3 937 630 295 67 11 chr9 46175723 46175901 -77900271 + B3A SINE B2 1 188 -10 3 937 250 295 12 37 chr9 46176211 46176292 -77899880 - ID4 SINE ID 0 83 5 3 937 2366 91 22 3 chr9 46176353 46176674 -77899498 + ORR1A2 LTR MaLR 1 327 0 3 937 355 352 93 101 chr9 46176703 46176864 -77899308 - B4A SINE B4 -16 276 123 3 937 1614 42 0 5 chr9 46176864 46177057 -77899115 - B2_Mm2 SINE B2 -1 194 3 3 937 355 352 93 101 chr9 46177057 46177173 -77898999 - B4A SINE B4 -170 122 1 3 937 707 174 136 57 chr9 46177227 46177404 -77898768 - B3A SINE B2 -7 191 1 3 937 360 232 0 10 chr9 46177453 46177549 -77898623 - L1MEf LINE L1 -4028 2214 2120 3 937 537 84 0 0 chr9 46177650 46177721 -77898451 - B1_Mur4 SINE Alu -6 144 74 3 937 1809 256 50 30 chr9 46177721 46178184 -77897988 - Lx8 LINE L1 -362 7111 6640 3 937 237 98 0 0 chr9 46178194 46178235 -77897937 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 937 1290 268 22 25 chr9 46178255 46178619 -77897553 - Lx8 LINE L1 -846 6627 6265 3 937 710 236 29 0 chr9 46178648 46178788 -77897384 + RSINE1 SINE B4 4 147 -18 3 937 868 236 43 43 chr9 46179003 46179211 -77896961 - B3 SINE B2 -1 215 8 3 937 374 348 109 0 chr9 46179333 46179471 -77896701 + B4A SINE B4 140 292 0 3 937 645 25 0 0 chr9 46179545 46179624 -77896548 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 937 315 311 55 115 chr9 46179905 46179918 -77896254 - B2_Mm2 SINE B2 -24 171 162 3 937 450 53 0 0 chr9 46179918 46179975 -77896197 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 937 657 297 19 9 chr9 46179975 46180143 -77896029 - B3A SINE B2 -33 165 1 3 937 459 271 56 24 chr9 46180304 46180429 -77895743 - B1F1 SINE Alu -19 130 2 3 937 1312 143 107 110 chr9 46180429 46180720 -77895452 - ORR1B1 LTR MaLR -63 331 42 3 937 195 42 0 0 chr9 46180755 46180779 -77895393 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 3 937 650 261 31 19 chr9 46180790 46180950 -77895222 - RSINE1 SINE B4 0 165 4 4 937 411 292 206 53 chr9 46182056 46182284 -77893888 + MLT1J2 LTR MaLR 69 331 -117 4 937 3131 142 63 11 chr9 46183076 46183327 -77892845 + RLTR12A LTR ERVK 1 252 -316 4 937 522 0 0 0 chr9 46183327 46183385 -77892787 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 937 3131 142 63 11 chr9 46183385 46183673 -77892499 + RLTR12A LTR ERVK 253 568 0 4 937 805 216 60 75 chr9 46183676 46183876 -77892296 - B3A SINE B2 0 198 2 4 937 1085 149 39 17 chr9 46184063 46184241 -77891931 + B3 SINE B2 35 216 0 4 937 540 0 0 0 chr9 46184656 46184716 -77891456 + (CAAAC)n Simple_repeat Simple_repeat 2 61 0 4 937 897 173 201 0 chr9 46184723 46184902 -77891270 + B3 SINE B2 1 215 -1 4 937 399 258 52 59 chr9 46184914 46185050 -77891122 - ID_B1 SINE B4 -3 221 87 4 937 226 91 16 113 chr9 46185792 46185854 -77890318 + A-rich Low_complexity Low_complexity 2 57 0 4 937 189 393 57 30 chr9 46186087 46186352 -77889820 - L2c LINE L2 -65 3322 3051 4 937 465 231 0 0 chr9 46186388 46186509 -77889663 + (TATATG)n Simple_repeat Simple_repeat 6 126 0 4 937 748 297 14 32 chr9 46186523 46186742 -77889430 - B3 SINE B2 -1 215 1 4 937 22 35 0 0 chr9 46186753 46186782 -77889390 + AT_rich Low_complexity Low_complexity 1 29 0 4 937 306 349 32 0 chr9 46187255 46187381 -77888791 + MIRc SINE MIR 11 140 -128 4 937 224 264 126 22 chr9 46187936 46188068 -77888104 + MIRm SINE MIR 31 169 -107 4 937 321 223 95 14 chr9 46188555 46188653 -77887519 - RSINE1 SINE B4 0 165 78 4 937 429 20 0 0 chr9 46189739 46189789 -77886383 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 937 928 210 74 15 chr9 46189949 46190152 -77886020 - B3 SINE B2 0 216 2 4 937 5859 102 93 11 chr9 46190467 46191353 -77884819 - RMER17B LTR ERVK 0 958 1 4 937 1330 105 19 16 chr9 46192403 46192715 -77883457 + (TCCA)n Simple_repeat Simple_repeat 1 313 0 4 937 515 262 191 11 chr9 46192722 46192911 -77883261 - MTE2b LTR MaLR 0 379 157 4 937 360 103 0 0 chr9 46192928 46192986 -77883186 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 937 644 236 86 0 chr9 46192986 46193126 -77883046 - B3A SINE B2 -44 154 3 4 937 597 246 74 14 chr9 46193126 46193269 -77882903 - MTE2b LTR MaLR -198 181 30 4 937 1582 217 42 44 chr9 46193471 46193857 -77882315 + MTD LTR MaLR 34 418 -1 4 937 794 224 82 128 chr9 46193901 46194096 -77882076 + B3A SINE B2 1 186 -9 4 937 1038 281 51 48 chr9 46194310 46194665 -77881507 - ORR1E LTR MaLR -2 357 2 4 937 390 233 0 0 chr9 46194774 46194847 -77881325 - ID4 SINE ID -10 73 1 4 937 294 185 41 16 chr9 46194857 46194978 -77881194 + CT-rich Low_complexity Low_complexity 4 127 0 4 937 185 170 111 19 chr9 46195168 46195222 -77880950 - MIRc SINE MIR -101 167 109 4 937 789 294 130 31 chr9 46195426 46195749 -77880423 - MLT1F LTR MaLR -15 533 179 4 937 1207 117 26 5 chr9 46195762 46195951 -77880221 - B2_Mm2 SINE B2 -2 193 1 4 937 216 0 0 0 chr9 46195962 46195986 -77880186 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 937 193 288 36 48 chr9 46196003 46196087 -77880085 - MIRb SINE MIR -180 88 6 4 937 257 321 23 23 chr9 46196099 46196185 -77879987 - MLT1F LTR MaLR -428 141 56 4 937 335 78 20 0 chr9 46196347 46196398 -77879774 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 4 937 248 225 0 20 chr9 46196654 46196722 -77879450 - B1_Mur4 SINE Alu 0 150 84 4 937 186 327 0 0 chr9 46198324 46198379 -77877793 + L2b LINE L2 3304 3358 -17 4 937 1098 130 165 5 chr9 46198645 46198839 -77877333 + URR1B DNA MER1_type 1 225 0 4 937 946 214 77 10 chr9 46199347 46199561 -77876611 - ID_B1 SINE B4 -46 246 20 4 937 1002 258 100 4 chr9 46200070 46200331 -77875841 + B4A SINE B4 7 292 0 4 937 307 258 0 22 chr9 46200333 46200468 -77875704 + (CATATA)n Simple_repeat Simple_repeat 5 136 0 4 937 598 147 41 15 chr9 46200527 46200799 -77875373 + (CA)n Simple_repeat Simple_repeat 1 279 0 4 937 394 287 55 9 chr9 46201557 46201666 -77874506 + MIR SINE MIR 44 157 -105 4 937 604 250 46 137 chr9 46201795 46202036 -77874136 - ID_B1 SINE B4 -5 219 1 4 937 195 100 0 0 chr9 46203225 46203255 -77872917 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 937 325 242 132 88 chr9 46203319 46203546 -77872626 + L1MB1 LINE L1 5925 6161 -7 4 937 325 215 19 9 chr9 46203566 46203674 -77872498 + C-rich Low_complexity Low_complexity 2 110 0 4 937 593 164 17 8 chr9 46203697 46203814 -77872358 + L1MA10 LINE L1 6217 6334 0 4 937 338 346 134 5 chr9 46203832 46204041 -77872131 + Charlie8 DNA MER1_type 40 275 -2153 4 937 250 309 12 0 chr9 46204397 46204478 -77871694 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 4 937 191 263 47 109 chr9 46205479 46205607 -77870565 - MIRb SINE MIR -124 144 25 4 937 254 294 48 29 chr9 46206379 46206484 -77869688 + PB1D10 SINE Alu 9 115 -2 4 937 1255 275 58 16 chr9 46206512 46206941 -77869231 + Lx8 LINE L1 6780 7226 -247 4 937 485 319 159 4 chr9 46207116 46207366 -77868806 + MLT1A0 LTR MaLR 1 289 -76 4 937 206 324 30 8 chr9 46207437 46207531 -77868641 - MIR SINE MIR -53 155 59 4 937 469 344 68 49 chr9 46207693 46207960 -77868212 + MLT1A0-int LTR MaLR 1004 1236 -135 4 937 424 237 87 65 chr9 46207989 46208227 -77867945 - MTEa LTR MaLR -8 371 106 4 937 621 72 0 0 chr9 46208237 46208320 -77867852 + (TTTTC)n Simple_repeat Simple_repeat 3 85 0 4 937 1010 118 0 6 chr9 46208323 46208485 -77867687 + (TTTC)n Simple_repeat Simple_repeat 4 164 0 4 937 370 91 536 9 chr9 46208486 46208595 -77867577 - B2_Mm2 SINE B2 -26 169 3 4 937 1348 71 16 37 chr9 46208672 46208861 -77867311 - B2_Mm2 SINE B2 -9 186 2 4 937 1218 166 14 14 chr9 46208887 46209101 -77867071 - B3 SINE B2 -1 215 2 4 937 222 191 0 0 chr9 46209609 46209656 -77866516 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 937 397 274 9 28 chr9 46209725 46209834 -77866338 - B4 SINE B4 -181 111 5 4 937 307 318 6 11 chr9 46209984 46210188 -77865984 - L1MDb LINE L1 -3144 3393 3193 4 937 369 317 73 82 chr9 46210316 46210465 -77865707 - L1MDb LINE L1 -3512 3025 2879 4 937 591 165 215 0 chr9 46210465 46210586 -77865586 - B1_Mur1 SINE Alu -1 148 2 4 937 369 317 73 82 chr9 46210586 46210656 -77865516 - L1MDb LINE L1 -3659 2878 2808 4 937 216 0 0 0 chr9 46210731 46210755 -77865417 + (TGG)n Simple_repeat Simple_repeat 1 24 0 4 937 860 115 8 8 chr9 46210755 46210886 -77865286 + B1_Mus1 SINE Alu 17 147 -1 4 937 637 310 103 48 chr9 46210908 46211199 -77864973 + ORR1E LTR MaLR 53 359 0 4 937 450 291 133 42 chr9 46211566 46211731 -77864441 - MLT1J LTR MaLR -265 247 68 4 937 559 286 18 0 chr9 46211831 46211999 -77864173 - L1MD2 LINE L1 -9 6350 6180 4 937 338 115 16 0 chr9 46212040 46212101 -77864071 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 937 248 364 50 0 chr9 46212102 46212223 -77863949 - L1MD2 LINE L1 -266 6093 5967 4 937 360 0 0 0 chr9 46212248 46212288 -77863884 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 937 696 259 14 0 chr9 46212328 46212471 -77863701 - B3A SINE B2 -53 145 1 4 937 225 94 0 0 chr9 46212483 46212515 -77863657 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 937 1266 283 90 71 chr9 46212663 46213484 -77862688 - L1MDb LINE L1 -4993 1640 527 4 937 2339 149 45 18 chr9 46213484 46213880 -77862292 - MTB_Mm LTR MaLR 0 407 1 4 937 327 262 144 85 chr9 46213880 46214204 -77861968 - L1MDb LINE L1 -6014 526 175 4 937 479 225 38 29 chr9 46214327 46214432 -77861740 - PB1D7 SINE Alu 0 120 15 4 937 21 36 0 0 chr9 46214485 46214513 -77861659 + AT_rich Low_complexity Low_complexity 1 28 0 4 937 268 326 35 0 chr9 46214865 46214951 -77861221 + MLT1I LTR MaLR 320 408 -3 4 937 261 269 14 29 chr9 46215217 46215286 -77860886 + ID4_ SINE ID 4 71 -12 4 937 495 0 0 0 chr9 46215312 46215367 -77860805 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 937 182 128 0 25 chr9 46215367 46215407 -77860765 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 937 535 240 48 67 chr9 46215555 46215573 -77860599 - RSINE1 SINE B4 0 165 147 4 937 378 0 0 0 chr9 46215573 46215615 -77860557 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 937 535 240 48 67 chr9 46215615 46215761 -77860411 - RSINE1 SINE B4 -19 146 4 4 937 334 287 74 0 chr9 46215809 46215917 -77860255 - L1MEg LINE L1 -5191 893 778 4 937 817 245 0 19 chr9 46216006 46216168 -77860004 - RSINE1 SINE B4 -4 161 3 4 937 1885 138 119 9 chr9 46216373 46216516 -77859656 + ORR1D1 LTR MaLR 1 165 -209 4 937 222 91 0 0 chr9 46216516 46216549 -77859623 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 937 1885 138 119 9 chr9 46216549 46216742 -77859430 + ORR1D1 LTR MaLR 166 374 0 4 937 7762 32 0 1 chr9 46218248 46219296 -77856876 - L1Md_F2 LINE L1 -67 6515 5469 4 937 682 93 9 9 chr9 46220747 46220856 -77855316 + (TCCC)n Simple_repeat Simple_repeat 4 112 0 4 937 256 174 0 21 chr9 46220866 46220913 -77855259 + C-rich Low_complexity Low_complexity 1 46 0 4 937 706 259 58 153 chr9 46220989 46221061 -77855111 + ORR1E LTR MaLR 21 80 -279 4 937 848 249 0 34 chr9 46221061 46221265 -77854907 - B3A SINE B2 0 198 2 4 937 706 259 58 153 chr9 46221265 46221538 -77854634 + ORR1E LTR MaLR 81 333 -26 4 937 611 250 43 0 chr9 46221695 46221835 -77854337 - ID_B1 SINE B4 0 224 79 4 937 807 192 15 4 chr9 46222531 46222792 -77853380 + CT-rich Low_complexity Low_complexity 1 264 0 4 937 1203 73 6 16 chr9 46222792 46222974 -77853198 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 937 630 0 0 0 chr9 46222974 46223044 -77853128 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 4 937 667 209 59 15 chr9 46223044 46223180 -77852992 - B1_Mur2 SINE Alu -4 145 4 4 937 1967 232 107 98 chr9 46223559 46224529 -77851643 - RMER17B LTR ERVK -5 903 2 4 937 208 336 88 15 chr9 46224802 46224938 -77851234 + L2c LINE L2 3113 3258 -129 4 937 819 227 0 0 chr9 46224998 46225139 -77851033 - B1_Mur2 SINE Alu -7 142 2 4 937 255 282 21 114 chr9 46226064 46226204 -77849968 + MIRb SINE MIR 33 159 -109 5 937 227 321 122 18 chr9 46226572 46226714 -77849458 + MIRm SINE MIR 1 150 -58 5 937 246 266 37 37 chr9 46226775 46226857 -77849315 + MIRm SINE MIR 84 165 -111 5 937 639 152 0 0 chr9 46227338 46227450 -77848722 + (TG)n Simple_repeat Simple_repeat 2 113 0 5 937 349 266 45 27 chr9 46227712 46227824 -77848348 - PB1D10 SINE Alu 0 117 4 5 937 277 333 45 65 chr9 46229173 46229327 -77846845 - MIRc SINE MIR -102 166 16 5 937 260 317 124 16 chr9 46229428 46229614 -77846558 + MIRb SINE MIR 25 230 -38 5 937 311 241 151 25 chr9 46230635 46230754 -77845418 + L1MEd LINE L1 969 1102 -5017 5 937 557 167 34 22 chr9 46230771 46230949 -77845223 + GA-rich Low_complexity Low_complexity 1 180 0 5 937 198 330 32 73 chr9 46231968 46232092 -77844080 - MIRm SINE MIR -133 143 25 5 937 211 287 34 53 chr9 46232228 46232345 -77843827 + MIRc SINE MIR 43 152 -56 5 937 251 267 17 0 chr9 46232396 46232456 -77843716 + CT-rich Low_complexity Low_complexity 2 62 0 5 937 352 294 22 0 chr9 46232462 46232554 -77843618 - B1F SINE Alu -16 133 40 5 937 234 0 0 0 chr9 46232922 46232948 -77843224 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 937 189 0 0 0 chr9 46232948 46232968 -77843204 + (CG)n Simple_repeat Simple_repeat 1 21 0 5 937 344 264 0 0 chr9 46232986 46233058 -77843114 - B4A SINE B4 -4 288 217 5 937 2986 134 9 11 chr9 46233058 46233525 -77842647 + RMER4A LTR ERVK 1 466 0 5 937 393 209 0 0 chr9 46233625 46233692 -77842480 - B4A SINE B4 0 292 226 5 937 204 179 0 0 chr9 46233692 46233731 -77842441 + (TAA)n Simple_repeat Simple_repeat 2 40 0 5 937 333 0 0 0 chr9 46233772 46233809 -77842363 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 937 626 299 75 30 chr9 46233851 46234117 -77842055 - B4A SINE B4 -14 278 1 5 937 180 0 0 0 chr9 46234131 46234151 -77842021 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 937 289 268 246 66 chr9 46234420 46234641 -77841531 - MLT1E3 LTR MaLR -138 489 229 5 937 293 312 26 26 chr9 46234641 46234756 -77841416 - PB1D10 SINE Alu -1 116 2 5 937 289 268 246 66 chr9 46234756 46234822 -77841350 - MLT1E3 LTR MaLR -399 228 151 5 937 331 218 318 0 chr9 46234912 46235022 -77841150 - MLT1E3 LTR MaLR -475 149 5 5 937 1126 266 34 34 chr9 46236555 46236847 -77839325 - B4A SINE B4 0 292 1 5 937 201 365 0 0 chr9 46237386 46237460 -77838712 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 937 184 171 13 26 chr9 46237475 46237553 -77838619 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 5 937 799 225 87 60 chr9 46238020 46238355 -77837817 + RLTR15 LTR ERVK 1 344 -15 5 937 322 287 23 83 chr9 46238651 46238784 -77837388 + PB1 SINE Alu 1 125 -2 5 937 1176 88 0 0 chr9 46239655 46239802 -77836370 + B1_Mus1 SINE Alu 2 148 0 5 937 437 99 0 27 chr9 46239802 46239875 -77836297 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 5 937 239 245 326 11 chr9 46239896 46239991 -77836181 + MIRb SINE MIR 27 151 -117 5 937 180 180 58 39 chr9 46239964 46240016 -77836156 + MIRm SINE MIR 124 176 -100 5 937 333 0 0 0 chr9 46240111 46240148 -77836024 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 937 471 279 91 61 chr9 46240327 46240525 -77835647 - B4A SINE B4 -85 207 4 5 937 218 304 0 0 chr9 46240605 46240651 -77835521 + MIR SINE MIR 34 79 -129 5 937 304 335 79 18 chr9 46241605 46241769 -77834403 + MER5B DNA MER1_type 5 178 0 5 937 184 172 0 0 chr9 46242262 46242291 -77833881 - L3 LINE CR1 -18 4471 4443 5 937 273 301 14 0 chr9 46242432 46242505 -77833667 + ID4_ SINE ID 3 76 -7 5 937 32 0 0 0 chr9 46242534 46242566 -77833606 + AT_rich Low_complexity Low_complexity 1 32 0 5 937 2321 171 144 32 chr9 46243198 46243762 -77832410 - RMER19A LTR ERVK -3 734 1 5 937 829 253 22 22 chr9 46244263 46244445 -77831727 - B3A SINE B2 -16 182 1 5 937 269 310 88 40 chr9 46245349 46245621 -77830551 - L1MB8 LINE L1 -31 6147 5863 5 937 2260 101 16 0 chr9 46245627 46245943 -77830229 + ORR1A4 LTR MaLR 1 321 -8 5 937 427 178 0 19 chr9 46245966 46246069 -77830103 + C-rich Low_complexity Low_complexity 2 102 0 5 937 476 324 7 0 chr9 46248000 46248148 -77828024 - RSINE1 SINE B4 -15 150 2 5 937 667 218 136 37 chr9 46248148 46248200 -77827972 - ORSL DNA Tip100 -8 267 216 5 937 321 26 0 0 chr9 46248200 46248238 -77827934 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 937 667 218 136 37 chr9 46248238 46248428 -77827744 - ORSL DNA Tip100 -60 215 2 5 937 816 202 0 0 chr9 46248985 46249227 -77826945 + (TG)n Simple_repeat Simple_repeat 1 242 0 5 937 270 0 0 0 chr9 46249317 46249347 -77826825 + (TGG)n Simple_repeat Simple_repeat 3 32 0 5 937 538 219 16 4 chr9 46249344 46249587 -77826585 + (TG)n Simple_repeat Simple_repeat 1 245 0 5 937 189 278 58 58 chr9 46250316 46250419 -77825753 + MIRc SINE MIR 60 162 -106 5 937 197 260 79 40 chr9 46251316 46251392 -77824780 - MIR SINE MIR -89 119 41 5 937 223 267 28 28 chr9 46252192 46252210 -77823962 + polypyrimidine Low_complexity Low_complexity 95 112 0 5 937 675 0 0 0 chr9 46252210 46252285 -77823887 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 5 937 251 263 16 29 chr9 46252285 46252374 -77823798 + CT-rich Low_complexity Low_complexity 1 87 0 5 937 213 39 0 0 chr9 46253049 46253075 -77823097 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 5 937 303 288 7 5 chr9 46253664 46253767 -77822405 + L2a LINE L2 3254 3408 -18 5 937 250 216 81 20 chr9 46253780 46253879 -77822293 + GA-rich Low_complexity Low_complexity 2 106 0 5 937 421 266 85 57 chr9 46254767 46254978 -77821194 - MER20 DNA MER1_type 0 219 3 5 937 572 273 86 51 chr9 46255597 46255794 -77820378 - B4A SINE B4 -57 235 32 5 937 327 297 160 23 chr9 46255830 46255961 -77820211 - MIR SINE MIR -18 244 96 5 937 835 150 123 34 chr9 46256022 46256037 -77820135 - B2_Mm2 SINE B2 0 195 182 5 937 852 180 0 68 chr9 46256037 46256198 -77819974 - B1_Mur4 SINE Alu 0 150 1 5 937 835 150 123 34 chr9 46256198 46256361 -77819811 - B2_Mm2 SINE B2 -14 181 1 5 937 332 269 190 13 chr9 46256368 46256412 -77819760 - B2_Mm1t SINE B2 -6 187 130 5 937 354 45 0 0 chr9 46256412 46256456 -77819716 + (TATG)n Simple_repeat Simple_repeat 4 47 0 5 937 422 234 68 4 chr9 46256456 46256569 -77819603 - B3A SINE B2 -64 129 2 5 937 583 224 135 22 chr9 46256680 46256858 -77819314 - MER3 DNA MER1_type 0 209 12 5 937 333 263 74 0 chr9 46257444 46257539 -77818633 + PB1D10 SINE Alu 1 102 -15 5 937 363 44 0 0 chr9 46257539 46257584 -77818588 + (CAAT)n Simple_repeat Simple_repeat 3 47 0 5 937 965 158 6 0 chr9 46257884 46258061 -77818111 + CT-rich Low_complexity Low_complexity 3 180 0 5 937 190 297 66 26 chr9 46258412 46258488 -77817684 - MIR SINE MIR -86 122 44 5 937 267 302 28 28 chr9 46258548 46258657 -77817515 - ORR1D1 LTR MaLR 0 374 266 5 937 1427 75 5 5 chr9 46258775 46258963 -77817209 + B2_Mm2 SINE B2 1 188 -7 5 937 36 0 0 0 chr9 46259018 46259054 -77817118 + AT_rich Low_complexity Low_complexity 1 36 0 5 937 1314 159 5 9 chr9 46259066 46259276 -77816896 - B3 SINE B2 -6 210 2 5 937 667 302 65 26 chr9 46259485 46259794 -77816378 - L1MC2 LINE L1 -82 6262 5942 5 937 182 338 34 61 chr9 46260261 46260409 -77815763 - L3 LINE CR1 -399 4090 3947 5 937 211 128 128 0 chr9 46260939 46260978 -77815194 - MIRc SINE MIR -65 203 160 5 937 347 0 23 0 chr9 46261351 46261394 -77814778 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 937 576 320 42 75 chr9 46261469 46261803 -77814369 + MLT1A0 LTR MaLR 43 365 0 5 937 544 305 183 54 chr9 46263780 46264113 -77812059 + MTEa LTR MaLR 1 376 -3 5 937 1133 173 20 106 chr9 46264180 46264274 -77811898 - URR1A DNA MER1_type -1 225 146 5 937 1324 7 0 0 chr9 46264274 46264427 -77811745 - L1Md_A LINE L1 0 6582 6430 5 937 1133 173 20 106 chr9 46264427 46264578 -77811594 - URR1A DNA MER1_type -81 145 1 5 937 561 268 110 6 chr9 46265527 46265700 -77810472 - B3A SINE B2 -7 191 1 5 937 393 218 24 134 chr9 46266392 46266519 -77809653 - MLT1A0 LTR MaLR -17 348 236 5 937 506 37 37 12 chr9 46266676 46266758 -77809414 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 937 399 310 97 69 chr9 46266759 46267060 -77809112 - B4 SINE B4 -20 272 2 5 937 754 256 55 82 chr9 46267188 46267443 -77808729 - MTE2a LTR MaLR -4 375 128 5 937 423 0 0 0 chr9 46267454 46267501 -77808671 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 937 248 284 13 13 chr9 46267639 46267714 -77808458 - MIRb SINE MIR -167 101 27 5 117 354 265 41 49 chr9 46268410 46268533 -77807639 - Lx8 LINE L1 -118 7355 7234 5 938 960 96 0 0 chr9 46268783 46269002 -77807170 + (TCTA)n Simple_repeat Simple_repeat 1 219 0 5 938 745 154 0 0 chr9 46269002 46269125 -77807047 - B1_Mur4 SINE Alu 0 150 28 5 938 468 301 118 14 chr9 46269581 46269765 -77806407 + ORR1D2 LTR MaLR 1 205 -154 5 938 343 290 114 9 chr9 46269915 46270159 -77806013 - L1M4b LINE L1 -5038 1971 1620 5 938 766 186 53 13 chr9 46270175 46270324 -77805848 - B3 SINE B2 -76 140 1 5 938 239 335 94 19 chr9 46270373 46270629 -77805543 - L1M4b LINE L1 -5769 1565 1291 5 938 1989 197 6 17 chr9 46270866 46271227 -77804945 - MTEb LTR MaLR -10 369 13 5 938 448 248 9 90 chr9 46271899 46272010 -77804162 + B1F2 SINE Alu 2 103 -46 5 938 432 0 0 0 chr9 46272011 46272059 -77804113 + (CAA)n Simple_repeat Simple_repeat 2 49 0 5 938 189 196 0 0 chr9 46272915 46272971 -77803201 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 938 737 100 8 0 chr9 46272972 46273102 -77803070 + (TC)n Simple_repeat Simple_repeat 2 132 0 5 938 272 302 47 23 chr9 46273824 46273953 -77802219 - LTR33 LTR ERVL -69 446 315 6 938 1423 235 32 47 chr9 46274007 46274403 -77801769 + MTE2a LTR MaLR 16 405 -14 6 938 268 384 45 19 chr9 46274413 46274567 -77801605 - LTR33 LTR ERVL -326 189 32 6 938 1604 228 60 6 chr9 46274695 46275048 -77801124 - MTEa LTR MaLR -5 374 3 6 938 308 280 27 0 chr9 46275146 46275221 -77800951 - ID4 SINE ID -4 79 3 6 938 186 276 35 0 chr9 46275634 46275692 -77800480 - MIRc SINE MIR -124 144 85 6 938 249 294 0 93 chr9 46275762 46275837 -77800335 - ID4 SINE ID 0 83 16 6 938 2398 127 30 82 chr9 46275841 46276270 -77799902 + MTB_Mm LTR MaLR 1 407 0 6 938 2198 128 98 3 chr9 46277182 46277541 -77798631 - ORR1B1 LTR MaLR 0 394 2 6 938 183 356 199 6 chr9 46277579 46277760 -77798412 - L3 LINE CR1 -308 4181 3966 6 938 289 329 0 0 chr9 46277876 46277952 -77798220 - ID4 SINE ID -6 77 2 6 938 453 182 0 0 chr9 46277962 46278061 -77798111 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 938 280 267 63 53 chr9 46278061 46278156 -77798016 - PB1D10 SINE Alu -20 97 2 6 938 326 265 57 57 chr9 46278724 46278848 -77797324 + MIRm SINE MIR 31 154 -122 6 938 210 71 0 0 chr9 46279102 46279130 -77797042 + (CTG)n Simple_repeat Simple_repeat 1 28 0 6 938 233 278 8 50 chr9 46279543 46279664 -77796508 + GA-rich Low_complexity Low_complexity 4 119 0 6 938 208 0 30 30 chr9 46279978 46280011 -77796161 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 6 938 815 241 45 55 chr9 46280014 46280216 -77795956 - ID_B1 SINE B4 -15 209 10 6 938 323 354 80 91 chr9 46280280 46280458 -77795714 - ORR1E LTR MaLR -5 354 175 6 938 213 39 0 0 chr9 46280458 46280484 -77795688 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 938 323 354 80 91 chr9 46280484 46280644 -77795528 - ORR1E LTR MaLR -185 174 21 6 938 24 0 0 0 chr9 46280991 46281015 -77795157 + AT_rich Low_complexity Low_complexity 1 24 0 6 938 434 244 23 50 chr9 46281426 46281578 -77794594 - MLT1J1 LTR MaLR -281 167 22 6 938 388 321 151 49 chr9 46282282 46282606 -77793566 + ORR1E LTR MaLR 3 359 0 6 938 1155 297 35 51 chr9 46282670 46283146 -77793026 - MLT2B4 LTR ERVL 0 464 7 6 938 883 200 7 0 chr9 46283322 46283402 -77792770 + ID SINE ID 1 81 -143 6 938 384 312 0 0 chr9 46283402 46283498 -77792674 + PB1D10 SINE Alu 1 96 -21 6 938 306 363 63 37 chr9 46283634 46283850 -77792322 + MIRc SINE MIR 7 227 -41 6 938 699 54 0 0 chr9 46285082 46285174 -77790998 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 938 511 176 0 25 chr9 46285174 46285296 -77790876 + GA-rich Low_complexity Low_complexity 1 119 0 6 938 180 258 258 0 chr9 46285587 46285684 -77790488 + L2b LINE L2 3254 3375 0 6 938 561 259 76 7 chr9 46286947 46287091 -77789081 + ID_B1 SINE B4 70 223 -1 6 938 408 40 0 0 chr9 46287338 46287388 -77788784 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 938 423 0 0 0 chr9 46288065 46288112 -77788060 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 938 200 229 0 16 chr9 46289056 46289118 -77787054 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 6 938 239 271 173 39 chr9 46289295 46289422 -77786750 - MIR SINE MIR -90 172 29 6 938 584 268 6 60 chr9 46289587 46289754 -77786418 - RSINE1 SINE B4 -4 161 4 6 938 276 311 27 0 chr9 46291847 46291921 -77784251 - MLT1A0 LTR MaLR -15 350 275 6 938 2239 90 3 31 chr9 46291924 46292322 -77783850 + ORR1A2 LTR MaLR 1 346 0 6 938 227 317 41 8 chr9 46293055 46293176 -77782996 - L1M5 LINE L1 -1015 5131 5007 6 938 321 338 66 8 chr9 46293538 46293777 -77782395 + MLT1I LTR MaLR 126 407 -4 6 938 434 267 41 8 chr9 46293900 46294021 -77782151 - ID_B1 SINE B4 -21 203 79 6 938 576 285 0 65 chr9 46294160 46294314 -77781858 - B1F SINE Alu -5 144 1 6 938 463 314 40 93 chr9 46294378 46294656 -77781516 - LTR85a LTR Gypsy? -439 263 1 6 938 650 247 25 25 chr9 46294784 46294946 -77781226 + RSINE1 SINE B4 4 165 0 6 938 562 236 11 7 chr9 46294949 46295231 -77780941 + (CATATA)n Simple_repeat Simple_repeat 1 283 0 6 938 269 196 56 81 chr9 46295377 46295477 -77780695 - MTEa LTR MaLR -5 374 278 6 938 23 0 0 0 chr9 46296055 46296078 -77780094 + AT_rich Low_complexity Low_complexity 1 23 0 6 938 1293 83 0 0 chr9 46296676 46296856 -77779316 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 6 938 286 162 29 14 chr9 46296857 46296926 -77779246 + C-rich Low_complexity Low_complexity 2 71 0 6 938 445 268 26 60 chr9 46297023 46297194 -77778978 - B4A SINE B4 -120 172 15 6 938 369 310 153 21 chr9 46297489 46297742 -77778430 - L1MC4 LINE L1 -2203 4011 3726 6 938 756 291 81 15 chr9 46297772 46298044 -77778128 - B4A SINE B4 -2 290 1 6 938 322 234 170 0 chr9 46298047 46298141 -77778031 - ID_B1 SINE B4 0 224 115 6 938 225 154 0 0 chr9 46298156 46298195 -77777977 + CT-rich Low_complexity Low_complexity 2 40 0 6 938 571 298 11 25 chr9 46298196 46298367 -77777805 - ID_B1 SINE B4 -46 246 76 6 938 225 0 0 0 chr9 46299188 46299213 -77776959 + (CAA)n Simple_repeat Simple_repeat 2 26 0 6 938 450 0 0 0 chr9 46299225 46299275 -77776897 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 938 2540 159 7 19 chr9 46299275 46299699 -77776473 + MTC LTR MaLR 3 421 0 6 938 324 0 0 0 chr9 46299722 46299758 -77776414 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 938 363 320 92 68 chr9 46299978 46300303 -77775869 - L1MC4 LINE L1 -3813 2402 2070 6 938 350 364 129 42 chr9 46300793 46301160 -77775012 - HAL1b LINE L1 -839 1170 774 6 938 610 269 62 109 chr9 46301160 46301464 -77774708 - B4A SINE B4 0 292 3 6 938 350 364 129 42 chr9 46301464 46301593 -77774579 - HAL1b LINE L1 -1236 773 632 6 938 243 233 152 22 chr9 46301665 46301757 -77774415 - L1MC4 LINE L1 -5346 965 862 6 938 1299 189 239 16 chr9 46301850 46302156 -77774016 - ORR1D1 LTR MaLR 0 374 1 6 938 577 288 6 67 chr9 46302211 46302375 -77773797 - B3A SINE B2 0 198 45 6 938 207 188 0 0 chr9 46302407 46302455 -77773717 + T-rich Low_complexity Low_complexity 1 48 0 6 938 531 157 31 12 chr9 46302760 46302921 -77773251 + (TCCA)n Simple_repeat Simple_repeat 3 166 0 6 938 210 156 22 22 chr9 46303020 46303066 -77773106 + L2b LINE L2 3329 3374 -1 6 938 206 156 0 22 chr9 46304378 46304424 -77771748 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 6 938 223 263 29 29 chr9 46304436 46304538 -77771634 + (TATG)n Simple_repeat Simple_repeat 2 103 0 6 938 712 329 73 8 chr9 46304538 46304798 -77771374 - MLT2B3 LTR ERVL -74 480 204 6 938 1071 58 0 0 chr9 46304857 46304996 -77771176 + (CA)n Simple_repeat Simple_repeat 1 139 0 6 938 850 260 53 10 chr9 46306150 46306356 -77769816 + B4 SINE B4 2 216 -76 6 938 925 209 23 0 chr9 46306397 46306574 -77769598 - B3A SINE B2 -17 181 1 6 938 377 326 11 0 chr9 46306574 46306666 -77769506 + B4 SINE B4 199 291 -1 6 938 184 133 85 43 chr9 46306887 46306934 -77769238 - L3b LINE CR1 -257 225 177 6 938 222 37 0 0 chr9 46307568 46307595 -77768577 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 6 938 183 100 0 0 chr9 46307799 46307829 -77768343 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 938 596 186 6 0 chr9 46307852 46308024 -77768148 + (TG)n Simple_repeat Simple_repeat 1 173 0 6 938 901 259 154 8 chr9 46308038 46308291 -77767881 - B4 SINE B4 0 292 3 6 938 214 291 175 19 chr9 46308525 46308632 -77767540 + MIRb SINE MIR 34 157 -111 6 938 257 332 63 47 chr9 46308861 46309161 -77767011 + L2 LINE L2 2193 2497 -922 6 938 551 192 17 23 chr9 46309187 46309363 -77766809 + CT-rich Low_complexity Low_complexity 2 176 0 6 938 212 237 0 0 chr9 46309363 46309401 -77766771 + polypyrimidine Low_complexity Low_complexity 3 40 0 6 938 719 297 39 10 chr9 46309471 46309675 -77766497 + ID_B1 SINE B4 3 212 -12 6 938 414 0 0 0 chr9 46309675 46309721 -77766451 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 6 938 248 250 0 0 chr9 46309800 46309844 -77766328 + ID4_ SINE ID 38 81 -2 6 938 317 233 10 10 chr9 46310835 46310939 -77765233 + (CAGT)n Simple_repeat Simple_repeat 2 105 0 6 938 491 82 0 14 chr9 46311909 46311983 -77764189 + (GA)n Simple_repeat Simple_repeat 1 73 0 6 938 891 176 213 6 chr9 46313371 46313554 -77762618 - URR1A DNA MER1_type -5 221 1 6 938 383 296 172 0 chr9 46313787 46313956 -77762216 + ID_B1 SINE B4 6 203 -21 6 938 236 149 21 0 chr9 46314021 46314068 -77762104 + GA-rich Low_complexity Low_complexity 1 48 0 6 938 180 330 76 25 chr9 46314076 46314170 -77762002 + MIRc SINE MIR 23 121 -147 6 938 371 53 35 0 chr9 46314170 46314227 -77761945 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 6 938 180 330 76 25 chr9 46314227 46314250 -77761922 + MIRc SINE MIR 122 146 -122 6 938 189 0 0 0 chr9 46315888 46315909 -77760263 + (T)n Simple_repeat Simple_repeat 1 21 0 6 938 525 286 0 0 chr9 46315976 46316151 -77760021 + CT-rich Low_complexity Low_complexity 2 176 0 6 938 376 321 171 16 chr9 46316151 46316344 -77759828 - HAL1-3A_ME LINE L1 -659 2199 1977 6 938 299 231 46 0 chr9 46316416 46316481 -77759691 - B4A SINE B4 -2 290 223 6 938 331 253 24 37 chr9 46316846 46316928 -77759244 + RLTR11A LTR ERVK 7 87 -441 6 938 963 255 42 32 chr9 46316944 46317256 -77758916 + RLTR11A LTR ERVK 214 528 0 6 938 397 273 41 80 chr9 46317279 46317462 -77758710 + L2c LINE L2 3229 3426 0 6 938 592 192 0 0 chr9 46317475 46317579 -77758593 + MIRc SINE MIR 150 253 -15 6 938 24 32 0 0 chr9 46317599 46317630 -77758542 + AT_rich Low_complexity Low_complexity 1 31 0 6 938 21 0 0 0 chr9 46317916 46317937 -77758235 + AT_rich Low_complexity Low_complexity 1 21 0 6 938 461 124 20 20 chr9 46317996 46318095 -77758077 + GA-rich Low_complexity Low_complexity 1 99 0 6 938 203 268 23 47 chr9 46318866 46318952 -77757220 + MIR3 SINE MIR 94 177 -31 6 938 259 284 36 119 chr9 46319437 46319605 -77756567 + MER91A DNA Tip100 19 172 -24 7 938 505 264 139 20 chr9 46320973 46321224 -77754948 - L1ME4a LINE L1 -3 6121 5841 7 938 360 284 0 0 chr9 46321592 46321673 -77754499 + PB1D10 SINE Alu 36 116 -1 7 938 1674 188 98 6 chr9 46321836 46322174 -77753998 + ORR1D1 LTR MaLR 1 369 -5 7 938 368 212 46 18 chr9 46322421 46322605 -77753567 + L1MB2 LINE L1 5276 5463 -693 7 938 546 57 0 0 chr9 46322613 46322683 -77753489 + (GA)n Simple_repeat Simple_repeat 1 70 0 7 938 792 328 48 8 chr9 46322695 46323073 -77753099 + L1MB2 LINE L1 5512 5904 -267 7 938 319 326 104 60 chr9 46323242 46323425 -77752747 - ORR1E LTR MaLR -168 191 1 7 938 496 257 89 38 chr9 46323425 46323606 -77752566 + L1MB2 LINE L1 5925 6121 -50 7 938 3243 43 8 8 chr9 46323606 46324002 -77752170 - MTA_Mm LTR MaLR 0 396 1 7 938 496 257 89 38 chr9 46324002 46324055 -77752117 + L1MB2 LINE L1 6122 6171 0 7 938 227 309 103 45 chr9 46324599 46324755 -77751417 - L3b LINE CR1 -139 343 179 7 938 249 306 125 70 chr9 46325698 46325898 -77750274 - Charlie17a DNA MER1_type -2 217 7 7 938 248 353 25 25 chr9 46326318 46326437 -77749735 + MARNA DNA Mariner 121 239 -347 7 938 563 283 116 76 chr9 46326510 46326787 -77749385 + MARNA DNA Mariner 245 533 -53 7 938 1432 244 51 37 chr9 46326787 46327059 -77749113 - MTEa LTR MaLR 0 379 110 7 938 2402 99 6 0 chr9 46327059 46327383 -77748789 + ORR1A2 LTR MaLR 1 326 -1 7 938 1432 244 51 37 chr9 46327383 46327484 -77748688 - MTEa LTR MaLR -270 109 1 7 938 482 286 52 122 chr9 46328133 46328519 -77747653 + ORR1E LTR MaLR 1 359 0 7 938 210 302 83 161 chr9 46328878 46328948 -77747224 + ID_B1 SINE B4 25 144 -80 7 938 234 318 61 102 chr9 46328948 46329011 -77747161 + B1F1 SINE Alu 9 66 -83 7 938 1238 61 0 0 chr9 46329011 46329158 -77747014 - B1_Mus1 SINE Alu 0 148 2 7 938 210 302 83 161 chr9 46329158 46329241 -77746931 + ID_B1 SINE B4 145 224 0 7 938 343 307 58 32 chr9 46329278 46329433 -77746739 + L2a LINE L2 3267 3425 -1 7 938 557 267 37 0 chr9 46331924 46332059 -77744113 - B1F2 SINE Alu -7 142 3 7 938 954 266 65 16 chr9 46332142 46332463 -77743709 + L1MB5 LINE L1 5830 6166 -8 7 938 477 294 160 49 chr9 46333917 46334281 -77741891 - MLT1C LTR MaLR -8 459 55 7 938 2890 180 40 2 chr9 46334281 46334850 -77741322 - RLTR18 LTR ERVK -3 613 23 7 938 519 122 0 0 chr9 46335041 46335131 -77741041 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 7 938 676 226 165 6 chr9 46335131 46335313 -77740859 + B3 SINE B2 2 212 -4 7 938 549 166 1 2 chr9 46336160 46336264 -77739908 + B3A SINE B2 1 103 -92 7 938 360 43 0 0 chr9 46336330 46336376 -77739796 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 938 2704 124 35 2 chr9 46336848 46337263 -77738909 - RMER4A LTR ERVK 0 466 48 7 938 495 0 0 0 chr9 46337263 46337318 -77738854 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 938 276 30 0 0 chr9 46337318 46337350 -77738822 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 938 2704 124 35 2 chr9 46337350 46337384 -77738788 - RMER4A LTR ERVK -419 47 4 7 938 298 264 41 106 chr9 46337428 46337551 -77738621 - B1_Mus2 SINE Alu -32 115 1 7 938 492 207 135 0 chr9 46337443 46337554 -77738618 - ID_B1 SINE B4 -20 204 79 7 938 219 320 75 45 chr9 46337660 46337794 -77738378 - MIRb SINE MIR -64 204 67 7 938 724 163 54 31 chr9 46337980 46338332 -77737840 + (TCTA)n Simple_repeat Simple_repeat 1 360 0 7 938 301 230 0 20 chr9 46338807 46338909 -77737263 + GA-rich Low_complexity Low_complexity 1 100 0 7 938 284 314 93 72 chr9 46339076 46339437 -77736735 + L2a LINE L2 3007 3425 -1 7 938 212 77 18 55 chr9 46339709 46339764 -77736408 + (TTCCC)n Simple_repeat Simple_repeat 2 54 0 7 938 226 198 24 47 chr9 46339807 46339934 -77736238 + CT-rich Low_complexity Low_complexity 2 125 0 7 938 216 244 108 12 chr9 46340507 46340590 -77735582 - MIRb SINE MIR -62 206 116 7 938 244 212 126 23 chr9 46340926 46341013 -77735159 - L2b LINE L2 -18 3357 3262 7 938 238 286 63 54 chr9 46341083 46341194 -77734978 + MER91C DNA Tip100 1 112 -28 7 938 1133 260 60 49 chr9 46341686 46342155 -77734017 + L1MA4 LINE L1 5546 6019 -281 7 938 379 100 29 0 chr9 46342214 46342284 -77733888 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 938 290 331 105 3 chr9 46342472 46342787 -77733385 + L2a LINE L2 1850 2196 -1223 7 938 193 341 46 15 chr9 46342826 46342957 -77733215 + L2a LINE L2 2287 2421 -998 7 938 484 327 182 8 chr9 46343013 46343147 -77733025 - MLT1C LTR MaLR -12 455 304 7 938 2710 55 6 17 chr9 46343147 46343497 -77732675 + ORR1A1 LTR MaLR 1 346 0 7 938 484 327 182 8 chr9 46343497 46343720 -77732452 - MLT1C LTR MaLR -164 303 36 7 938 512 252 165 73 chr9 46343811 46344059 -77732113 - B4 SINE B4 -17 275 5 7 938 239 294 55 26 chr9 46344255 46344398 -77731774 - PB1D10 SINE Alu -1 148 1 7 938 358 370 87 11 chr9 46344693 46344954 -77731218 + L2a LINE L2 3029 3307 -119 7 938 453 19 0 0 chr9 46344954 46345008 -77731164 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 938 358 370 87 11 chr9 46345008 46345104 -77731068 + L2a LINE L2 3308 3413 -13 7 938 495 33 0 0 chr9 46345371 46345432 -77730740 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 938 23 33 0 0 chr9 46346376 46346406 -77729766 + AT_rich Low_complexity Low_complexity 1 30 0 7 938 727 164 8 17 chr9 46347041 46347267 -77728905 + CT-rich Low_complexity Low_complexity 1 224 0 7 938 1066 257 41 38 chr9 46347878 46348218 -77727954 + MTEb LTR MaLR 1 341 -38 7 938 311 259 32 12 chr9 46348289 46348397 -77727775 - MER34A LTR ERV1 -454 133 25 7 938 262 245 115 21 chr9 46348437 46348533 -77727639 - B1_Mur3 SINE Alu -40 109 5 7 938 243 188 0 0 chr9 46349932 46349980 -77726192 + T-rich Low_complexity Low_complexity 1 48 0 7 938 1229 54 0 0 chr9 46349980 46350128 -77726044 - B1_Mus1 SINE Alu 0 148 1 7 938 509 30 0 15 chr9 46350131 46350199 -77725973 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 7 938 24 0 0 0 chr9 46350758 46350782 -77725390 + AT_rich Low_complexity Low_complexity 1 24 0 7 938 537 236 93 0 chr9 46350783 46350923 -77725249 - B3A SINE B2 -18 180 28 7 938 1050 303 46 70 chr9 46350943 46351446 -77724726 + MLT2B1 LTR ERVL 10 500 -20 7 938 296 268 0 76 chr9 46351505 46351610 -77724562 + MTEa LTR MaLR 1 97 -282 7 938 235 257 70 44 chr9 46351825 46351939 -77724233 + MTEa LTR MaLR 251 367 -12 7 938 516 326 20 10 chr9 46352091 46352286 -77723886 - MIRb SINE MIR -43 225 29 7 938 360 261 38 8 chr9 46352343 46352474 -77723698 - Charlie22a DNA MER1_type -293 198 64 7 938 436 287 17 0 chr9 46352819 46352934 -77723238 - PB1D10 SINE Alu 0 117 1 7 938 398 204 11 0 chr9 46353610 46353703 -77722469 + GA-rich Low_complexity Low_complexity 2 95 0 7 938 2112 191 25 2 chr9 46353706 46354110 -77722062 - MTC LTR MaLR -8 413 1 7 938 378 0 0 0 chr9 46354147 46354189 -77721983 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 938 297 128 0 0 chr9 46354190 46354237 -77721935 + (GGA)n Simple_repeat Simple_repeat 2 48 0 7 938 642 49 0 0 chr9 46354365 46354447 -77721725 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 938 458 269 67 0 chr9 46354913 46355017 -77721155 - PB1D10 SINE Alu -6 111 1 7 938 219 69 0 0 chr9 46355155 46355184 -77720988 + (TGG)n Simple_repeat Simple_repeat 1 29 0 7 938 223 256 151 0 chr9 46355205 46355291 -77720881 + MIR SINE MIR 98 196 -66 7 938 453 275 81 6 chr9 46355408 46355440 -77720732 - MLT2B1 LTR ERVL -10 557 525 7 938 2262 146 28 3 chr9 46355440 46355798 -77720374 + ORR1B2 LTR MaLR 1 367 0 7 938 629 302 60 7 chr9 46355798 46356109 -77720063 - MLT2B1 LTR ERVL -43 524 96 7 938 373 271 0 39 chr9 46357301 46357428 -77718744 + MIRb SINE MIR 90 211 -57 7 938 388 278 134 88 chr9 46357799 46358142 -77718030 + ORR1E LTR MaLR 1 359 0 7 938 465 304 62 62 chr9 46359141 46359383 -77716789 + MTEa LTR MaLR 1 242 -137 7 938 1270 122 11 5 chr9 46359633 46359822 -77716350 - B2_Mm2 SINE B2 -3 192 3 7 938 609 157 0 0 chr9 46360618 46360752 -77715420 + (CA)n Simple_repeat Simple_repeat 2 135 0 7 938 417 310 9 0 chr9 46360798 46360911 -77715261 + PB1D10 SINE Alu 2 115 -2 7 938 799 291 13 26 chr9 46361248 46361474 -77714698 - ID_B1 SINE B4 0 224 2 7 938 265 224 0 56 chr9 46364029 46364100 -77712072 + ID4 SINE ID 6 72 -11 7 938 2103 106 38 13 chr9 46364402 46364718 -77711454 - ORR1A2 LTR MaLR -1 326 3 7 938 245 225 112 48 chr9 46364800 46364914 -77711258 + L2a LINE L2 3017 3160 -227 7 938 34 0 0 0 chr9 46364994 46365028 -77711144 + AT_rich Low_complexity Low_complexity 1 34 0 7 938 278 262 120 30 chr9 46365040 46365264 -77710908 - MTEa LTR MaLR -25 354 98 7 938 261 324 86 0 chr9 46365441 46365546 -77710626 + L2a LINE L2 3301 3414 -12 7 938 458 233 25 62 chr9 46365631 46365791 -77710381 - RMER30 DNA MER1_type -42 160 7 7 938 497 303 33 7 chr9 46366727 46366880 -77709292 - MER91B DNA Tip100 -11 179 23 7 938 261 0 0 0 chr9 46367461 46367490 -77708682 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 938 213 313 60 17 chr9 46368180 46368297 -77707875 - L2b LINE L2 0 3375 3254 7 938 1044 229 49 72 chr9 46368303 46368651 -77707521 - ORR1E LTR MaLR -2 357 18 7 938 291 303 92 0 chr9 46369126 46369268 -77706904 + LTR31 LTR ERV1 153 307 -312 7 938 378 0 0 0 chr9 46369484 46369526 -77706646 + (A)n Simple_repeat Simple_repeat 1 42 0 7 938 331 285 85 35 chr9 46370284 46370542 -77705630 + ORR1E LTR MaLR 88 358 -1 7 938 655 280 134 66 chr9 46370602 46371027 -77705145 + LTR48 LTR ERV1 332 785 -2 7 938 21 36 0 0 chr9 46371310 46371338 -77704834 + AT_rich Low_complexity Low_complexity 1 28 0 7 938 1412 77 11 5 chr9 46371345 46371529 -77704643 + B2_Mm2 SINE B2 2 186 -9 7 938 709 297 138 36 chr9 46371538 46371922 -77704250 + MLT1D LTR MaLR 39 461 -44 7 938 281 256 11 103 chr9 46372252 46372339 -77703833 + ID4_ SINE ID 1 79 -4 7 938 317 318 126 5 chr9 46372382 46372572 -77703600 - Helitron1Na_Mam RC Helitron -35 1027 815 7 938 281 300 37 85 chr9 46372614 46372778 -77703394 - L1MA10 LINE L1 -9 6325 6170 8 938 280 256 37 74 chr9 46372858 46372993 -77703179 + B3A SINE B2 68 197 -1 8 938 648 204 130 0 chr9 46374022 46374184 -77701988 + MTE2a LTR MaLR 195 377 -2 8 938 264 224 68 34 chr9 46374344 46374432 -77701740 + MER65-int LTR ERV1 423 513 -4843 8 938 1117 108 0 0 chr9 46374439 46374587 -77701585 - B1_Mus1 SINE Alu 0 148 1 8 938 578 110 81 0 chr9 46374739 46374980 -77701192 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 8 938 509 99 12 0 chr9 46375042 46375123 -77701049 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 8 938 439 67 160 0 chr9 46375492 46375566 -77700606 + B2_Mm2 SINE B2 1 86 -109 8 938 1979 111 65 24 chr9 46375566 46375906 -77700266 - ORR1B1 LTR MaLR 0 394 41 8 938 195 129 0 0 chr9 46375982 46376013 -77700159 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 8 938 632 252 7 7 chr9 46376070 46376206 -77699966 + B1_Mur1 SINE Alu 1 136 -13 8 938 182 37 0 36 chr9 46376208 46376236 -77699936 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 938 351 214 165 8 chr9 46376294 46376421 -77699751 + MER65-int LTR ERV1 1577 1723 -3633 8 938 321 162 0 0 chr9 46376435 46376503 -77699669 + (CAT)n Simple_repeat Simple_repeat 1 68 0 8 938 310 176 80 13 chr9 46376563 46376638 -77699534 + MER65-int LTR ERV1 1931 2010 -3346 8 938 618 249 130 0 chr9 46376899 46377068 -77699104 - B3 SINE B2 -11 205 15 8 938 475 261 17 17 chr9 46377074 46377191 -77698981 - PB1D10 SINE Alu 0 117 1 8 938 534 252 35 0 chr9 46377279 46377394 -77698778 + PB1D9 SINE Alu 2 120 0 8 938 290 276 11 22 chr9 46377624 46377713 -77698459 + MLT1A1 LTR MaLR 307 394 -14 8 938 447 265 68 29 chr9 46377807 46378013 -77698159 + MER65-int LTR ERV1 2357 2570 -2553 8 938 993 87 0 0 chr9 46378140 46378278 -77697894 + B2_Mm2 SINE B2 1 138 -57 8 938 904 229 0 27 chr9 46378419 46378607 -77697565 + B3A SINE B2 1 183 -15 8 938 366 23 0 0 chr9 46378998 46379041 -77697131 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 938 244 288 15 15 chr9 46379207 46379274 -77696898 - ID4_ SINE ID -11 72 6 8 938 2046 143 45 20 chr9 46379321 46379677 -77696495 + ORR1B2 LTR MaLR 1 365 -2 8 938 7434 167 63 14 chr9 46379681 46381115 -77695057 + ORR1B2-int LTR MaLR 2 1506 -3 8 938 2043 158 36 17 chr9 46381118 46381478 -77694694 + ORR1B2 LTR MaLR 1 367 0 8 938 631 296 117 35 chr9 46381505 46381848 -77694324 + MER65-int LTR ERV1 3721 4091 -780 8 938 693 230 118 0 chr9 46382055 46382207 -77693965 + ID_B1 SINE B4 4 173 -51 8 938 1443 268 56 7 chr9 46382359 46382802 -77693370 + MER57A-int LTR ERV1 5420 5884 -303 8 938 1996 136 73 30 chr9 46383079 46383450 -77692722 + ORR1B1 LTR MaLR 1 387 -7 8 938 2831 64 66 3 chr9 46383450 46383812 -77692360 + IAPEY_LTR LTR ERVK 1 385 0 8 938 319 218 167 16 chr9 46384108 46384234 -77691938 - L1M5 LINE L1 -715 5464 5320 8 938 271 248 144 23 chr9 46384238 46384370 -77691802 + B1F2 SINE Alu 1 148 -1 8 938 1191 49 0 14 chr9 46384443 46384589 -77691583 + B1_Mm SINE Alu 2 145 -2 8 938 524 93 41 0 chr9 46384597 46384694 -77691478 + (GA)n Simple_repeat Simple_repeat 2 102 0 8 938 23 0 0 0 chr9 46384837 46384860 -77691312 + AT_rich Low_complexity Low_complexity 1 23 0 8 938 354 272 10 0 chr9 46384898 46385001 -77691171 - B3A SINE B2 -93 105 2 8 938 1169 307 155 24 chr9 46385020 46385807 -77690365 - L1M2 LINE L1 -2825 3318 2429 8 938 886 268 31 19 chr9 46386038 46386357 -77689815 - L1MD LINE L1 -965 5181 4859 8 938 293 239 77 112 chr9 46386357 46386527 -77689645 - MER34A LTR ERV1 0 571 408 8 938 351 65 0 0 chr9 46387778 46387824 -77688348 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 8 938 788 80 0 9 chr9 46387984 46388098 -77688074 + (GAAA)n Simple_repeat Simple_repeat 1 113 0 8 938 522 200 57 36 chr9 46388182 46388243 -77687929 - RLTR42 LTR ERVK -11 228 165 8 938 2830 69 185 0 chr9 46388243 46388692 -77687480 - RLTR47_MM LTR ERV1 0 532 1 8 938 575 200 57 36 chr9 46388692 46388770 -77687402 - RLTR42 LTR ERVK -75 164 86 8 938 259 127 55 0 chr9 46388863 46388914 -77687258 - MLT1J LTR MaLR -378 134 43 8 938 352 65 0 0 chr9 46388874 46388920 -77687252 - RLTR42 LTR ERVK -193 46 1 8 938 360 0 0 0 chr9 46389044 46389084 -77687088 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 938 297 0 0 0 chr9 46389084 46389116 -77687056 + (GA)n Simple_repeat Simple_repeat 1 33 0 8 938 231 36 0 0 chr9 46389415 46389443 -77686729 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 938 393 264 31 99 chr9 46389464 46389687 -77686485 + Lx8 LINE L1 7264 7471 -2 8 938 439 223 196 30 chr9 46389748 46389947 -77686225 - Helitron1Na_Mam RC Helitron -821 241 10 8 938 526 226 9 9 chr9 46390196 46390303 -77685869 + MamGypLTR2c LTR Gypsy 4 110 -958 8 938 2119 132 50 56 chr9 46391444 46391820 -77684352 + ORR1C1 LTR MaLR 5 378 0 8 938 998 150 40 11 chr9 46391885 46392060 -77684112 - ORR1D1 LTR MaLR -2 372 193 8 938 255 275 37 24 chr9 46392071 46392153 -77684019 - MTE2a LTR MaLR -19 360 278 8 938 236 271 0 12 chr9 46392254 46392340 -77683832 + (TA)n Simple_repeat Simple_repeat 2 86 0 8 938 2095 79 107 6 chr9 46392340 46392649 -77683523 + ORR1A2 LTR MaLR 1 319 -8 8 938 456 19 0 0 chr9 46392656 46392709 -77683463 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 938 1361 182 168 27 chr9 46392974 46393136 -77683036 - ORR1D1 LTR MaLR 0 374 177 8 938 510 17 0 0 chr9 46393136 46393195 -77682977 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 938 1361 182 168 27 chr9 46393195 46393245 -77682927 - ORR1D1 LTR MaLR -198 176 114 8 938 2596 94 46 51 chr9 46393245 46393658 -77682514 + IAPLTR2a LTR ERVK 1 411 0 8 938 1361 182 168 27 chr9 46393658 46393772 -77682400 - ORR1D1 LTR MaLR -261 113 1 8 938 629 338 52 62 chr9 46393772 46394160 -77682012 + MLT2C1 LTR ERVL 4 387 -10 8 938 986 196 9 42 chr9 46394187 46394400 -77681772 - B3 SINE B2 -9 207 2 8 938 1074 322 75 36 chr9 46394495 46394972 -77681200 + MLT1D LTR MaLR 2 497 -8 8 938 180 0 0 0 chr9 46395513 46395533 -77680639 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 8 938 732 301 93 39 chr9 46395662 46396018 -77680154 - MLT1C LTR MaLR 0 467 93 8 938 180 312 42 59 chr9 46396074 46396193 -77679979 - L2 LINE L2 -773 2646 2530 8 938 362 352 72 34 chr9 46397037 46397302 -77678870 + L2c LINE L2 3100 3374 -13 8 938 942 280 0 9 chr9 46397384 46397611 -77678561 + MLT1B LTR MaLR 164 388 -2 8 938 181 246 152 34 chr9 46397822 46397881 -77678291 - MIRm SINE MIR -89 187 122 8 938 195 310 28 14 chr9 46398469 46398541 -77677631 - MIRc SINE MIR -114 154 82 8 939 186 43 0 0 chr9 46400675 46400698 -77675474 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 8 939 263 139 13 53 chr9 46402163 46402198 -77673974 + polypyrimidine Low_complexity Low_complexity 41 75 0 8 939 1192 79 11 6 chr9 46402198 46402376 -77673796 + (TTCCC)n Simple_repeat Simple_repeat 1 179 0 8 939 263 139 13 53 chr9 46402376 46402416 -77673756 + polypyrimidine Low_complexity Low_complexity 3 40 0 8 939 486 156 0 0 chr9 46402424 46402520 -77673652 - RMER1B Other Other -13 1053 958 8 939 428 17 0 48 chr9 46402526 46402588 -77673584 + (CAAAA)n Simple_repeat Simple_repeat 3 61 0 8 939 308 336 111 58 chr9 46402950 46403179 -77672993 + MIRc SINE MIR 23 268 0 8 939 366 270 56 42 chr9 46403200 46403343 -77672829 + B1F SINE Alu 5 149 0 8 939 364 191 0 16 chr9 46403355 46403419 -77672753 + ID4 SINE ID 2 64 -19 8 939 2020 111 28 196 chr9 46403880 46404451 -77671721 + IAPLTR2_Mm LTR ERVK 1 475 0 8 939 846 114 106 18 chr9 46404452 46404622 -77671550 + IAPEz-int LTR ERVK 9 193 -6288 8 939 247 327 0 0 chr9 46404622 46404677 -77671495 + RLTR27 LTR ERVK 221 275 -34 8 939 3611 56 26 18 chr9 46404677 46405168 -77671004 + IAPEz-int LTR ERVK 168 662 -5819 8 939 1895 76 61 0 chr9 46405168 46405430 -77670742 + IAPEz-int LTR ERVK 1359 1636 -4845 8 939 5880 48 4 9 chr9 46405429 46406179 -77669993 + IAPEz-int LTR ERVK 5736 6481 0 8 939 2334 97 182 0 chr9 46406179 46406581 -77669591 + IAPLTR2_Mm LTR ERVK 1 475 0 8 939 386 214 141 33 chr9 46407546 46407667 -77668505 - B1F1 SINE Alu -7 142 9 8 939 234 368 30 53 chr9 46409295 46409427 -77666745 - MIR3 SINE MIR -77 131 3 8 939 641 327 44 26 chr9 46409656 46409885 -77666287 + B4A SINE B4 53 285 -7 8 939 1263 94 0 0 chr9 46411993 46412173 -77663999 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 939 297 0 0 0 chr9 46412307 46412340 -77663832 + (TCTG)n Simple_repeat Simple_repeat 1 33 0 8 939 306 0 0 0 chr9 46412523 46412557 -77663615 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 8 939 703 286 5 30 chr9 46413028 46413226 -77662946 - B3A SINE B2 -4 194 2 8 939 276 288 15 15 chr9 46413245 46413312 -77662860 - ID SINE ID -142 82 16 8 939 238 267 114 38 chr9 46413549 46413654 -77662518 + MER5A DNA MER1_type 77 189 0 8 939 372 281 26 58 chr9 46413915 46414070 -77662102 + RMER10B LTR ERVL 247 396 -2 8 939 237 196 59 0 chr9 46414070 46414121 -77662051 - MIRc SINE MIR -114 154 101 8 939 226 140 0 23 chr9 46414145 46414189 -77661983 + B1_Mus2 SINE Alu 104 146 -1 8 939 405 208 40 0 chr9 46414216 46414317 -77661855 - PB1D10 SINE Alu -12 105 1 8 939 211 277 0 0 chr9 46414391 46414438 -77661734 - BC1_Mm scRNA scRNA -89 63 17 8 939 1545 175 89 37 chr9 46414814 46415035 -77661137 + ORR1D1 LTR MaLR 1 243 -131 8 939 3069 86 53 104 chr9 46415035 46415582 -77660590 - MURVY-LTR LTR ERV1 0 519 1 8 939 1545 175 89 37 chr9 46415582 46415710 -77660462 + ORR1D1 LTR MaLR 244 368 -6 8 939 649 305 99 5 chr9 46415795 46416016 -77660156 + MLT1E2 LTR MaLR 343 584 -43 8 939 1454 180 45 25 chr9 46416482 46416796 -77659376 - Charlie19a DNA Charlie -64 322 3 8 939 292 297 99 12 chr9 46417202 46417352 -77658820 - L2a LINE L2 -2 3424 3211 8 939 182 246 228 0 chr9 46417780 46417837 -77658335 - MIRb SINE MIR -17 251 182 8 939 556 297 179 0 chr9 46419290 46419502 -77656670 + B4 SINE B4 2 251 -41 8 939 728 85 8 0 chr9 46419518 46419636 -77656536 + (CA)n Simple_repeat Simple_repeat 2 120 0 8 939 185 309 143 12 chr9 46420661 46420822 -77655350 - MIRb SINE MIR -13 255 67 8 939 848 253 113 60 chr9 46420822 46421014 -77655158 + B4 SINE B4 11 219 -73 8 939 1410 56 0 0 chr9 46421014 46421194 -77654978 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 939 848 253 113 60 chr9 46421194 46421266 -77654906 + B4 SINE B4 220 289 -3 8 939 200 200 100 0 chr9 46421275 46421335 -77654837 + (CATG)n Simple_repeat Simple_repeat 3 68 0 9 939 306 277 30 38 chr9 46421671 46421807 -77654365 + MTEb LTR MaLR 271 408 0 9 939 614 287 123 0 chr9 46422457 46422652 -77653520 + ID_B1 SINE B4 2 220 -4 9 939 180 169 61 162 chr9 46424505 46424604 -77651568 + MIR SINE MIR 106 194 -68 9 939 212 312 10 0 chr9 46424815 46424911 -77651261 + (TG)n Simple_repeat Simple_repeat 2 98 0 9 939 443 254 201 30 chr9 46425028 46425305 -77650867 - MLT2B1 LTR ERVL -83 479 62 9 939 337 254 0 0 chr9 46427124 46427195 -77648977 - ID4 SINE ID -10 73 3 9 939 241 282 56 14 chr9 46427950 46428022 -77648150 + Zaphod DNA Tip100 331 405 -3626 9 939 185 352 76 11 chr9 46428124 46428216 -77647956 + L2a LINE L2 3298 3395 -31 9 939 195 129 0 0 chr9 46428876 46428907 -77647265 + (TTCTCC)n Simple_repeat Simple_repeat 2 32 0 9 939 809 199 0 6 chr9 46428907 46429084 -77647088 + CT-rich Low_complexity Low_complexity 3 178 0 9 939 471 35 0 0 chr9 46429090 46429147 -77647025 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 9 939 877 159 20 7 chr9 46429212 46429358 -77646814 - B1_Mus1 SINE Alu 0 148 1 9 939 312 281 37 0 chr9 46429639 46429721 -77646451 + ORR1E LTR MaLR 1 85 -274 9 939 862 277 107 54 chr9 46429909 46430245 -77645927 - ORR1E LTR MaLR -5 354 1 9 939 222 283 49 81 chr9 46431192 46431315 -77644857 + MIR SINE MIR 28 146 -62 9 939 258 321 0 9 chr9 46431418 46431525 -77644647 + (TA)n Simple_repeat Simple_repeat 2 107 0 9 939 378 282 162 89 chr9 46432771 46432962 -77643210 + B4 SINE B4 26 230 -62 9 939 479 285 124 22 chr9 46434439 46434665 -77641507 + MER112 DNA MER1_type 8 256 -5 9 939 203 278 167 0 chr9 46434988 46435078 -77641094 + MIRc SINE MIR 31 135 -133 9 939 575 238 0 70 chr9 46435122 46435280 -77640892 + ID_B1 SINE B4 78 224 0 9 939 261 294 0 0 chr9 46435282 46435350 -77640822 + ID4 SINE ID 2 69 -14 9 939 207 69 0 0 chr9 46435684 46435713 -77640459 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 9 939 389 151 0 11 chr9 46436331 46436418 -77639754 + CT-rich Low_complexity Low_complexity 3 88 0 9 939 223 195 0 0 chr9 46436715 46436756 -77639416 + (CTAA)n Simple_repeat Simple_repeat 3 43 0 9 939 708 255 101 5 chr9 46436756 46436945 -77639227 - ID_B1 SINE B4 -17 207 1 9 939 453 285 47 24 chr9 46437071 46437240 -77638932 + B4 SINE B4 2 174 -118 9 939 363 240 72 10 chr9 46437259 46437356 -77638816 + B1F SINE Alu 41 143 -6 9 939 393 281 21 21 chr9 46437369 46437511 -77638661 + BC1_Mm scRNA scRNA 1 142 -10 9 939 325 205 135 47 chr9 46437605 46437759 -77638413 - L1MB7 LINE L1 -302 5998 5812 9 939 504 220 19 10 chr9 46437963 46438096 -77638076 - L1MB7 LINE L1 -439 5739 5600 9 939 749 58 9 28 chr9 46438195 46438302 -77637870 - U6 snRNA snRNA -2 105 1 9 939 259 203 27 68 chr9 46438370 46438444 -77637728 - ID4 SINE ID -11 72 2 9 939 342 307 8 26 chr9 46438453 46438570 -77637602 + L1M5 LINE L1 5506 5620 -559 9 939 247 291 0 0 chr9 46439915 46439970 -77636202 - MER5B DNA MER1_type -33 145 91 9 939 296 255 29 39 chr9 46440028 46440130 -77636042 + ID_B1 SINE B4 122 222 -2 9 939 381 313 47 41 chr9 46440316 46440486 -77635686 - MER104 DNA Tc2 -2 179 9 9 939 235 250 18 0 chr9 46440629 46440685 -77635487 - MIR3 SINE MIR -7 201 145 9 939 766 283 55 19 chr9 46440686 46440942 -77635230 + MARNA DNA Mariner 211 475 -111 9 939 182 313 66 44 chr9 46441154 46441291 -77634881 - MIR3 SINE MIR -67 141 2 9 939 216 0 0 0 chr9 46441904 46441928 -77634244 + (A)n Simple_repeat Simple_repeat 1 24 0 9 939 1165 58 0 0 chr9 46441949 46442086 -77634086 + B1_Mus1 SINE Alu 2 138 -10 9 939 216 0 0 0 chr9 46442086 46442110 -77634062 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 939 712 267 14 58 chr9 46442172 46442379 -77633793 - B3A SINE B2 0 198 1 9 939 271 250 281 0 chr9 46442694 46442829 -77633343 + MER5A DNA MER1_type 1 173 -16 9 939 255 370 89 25 chr9 46442851 46443009 -77633163 - MER5B DNA MER1_type -1 177 10 9 939 2118 110 3 59 chr9 46443074 46443411 -77632761 - ORR1A3 LTR MaLR -8 318 1 9 939 230 65 0 0 chr9 46443893 46443924 -77632248 - B3 SINE B2 -184 32 2 9 939 495 0 0 0 chr9 46445119 46445174 -77630998 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 939 870 233 14 98 chr9 46445451 46445551 -77630621 + ID SINE ID 1 82 -142 9 939 381 338 42 0 chr9 46445551 46445693 -77630479 + B1F SINE Alu 1 148 -1 9 939 399 191 21 0 chr9 46445816 46445910 -77630262 - L1MC3 LINE L1 -161 7624 7529 9 939 722 116 18 0 chr9 46446017 46446129 -77630043 - L1MB7 LINE L1 -187 5997 5884 9 939 250 256 74 37 chr9 46446145 46446226 -77629946 - MER50 LTR ERV1 -42 692 609 9 939 245 233 0 0 chr9 46446253 46446310 -77629862 - B1F SINE Alu -1 148 92 9 939 1020 249 79 61 chr9 46446310 46446387 -77629785 + MT2B LTR ERVL 1 100 -501 9 939 327 316 13 0 chr9 46446387 46446466 -77629706 - ID_B1 SINE B4 -86 138 59 9 939 1020 249 79 61 chr9 46446466 46446847 -77629325 + MT2B LTR ERVL 101 601 0 9 939 334 296 46 49 chr9 46446825 46446852 -77629320 - ID_B1 SINE B4 -99 193 141 9 939 478 183 12 12 chr9 46446852 46446935 -77629237 - B1F2 SINE Alu -66 83 1 9 939 334 296 46 49 chr9 46446935 46446990 -77629182 - ID_B1 SINE B4 -99 140 28 9 939 492 235 10 0 chr9 46447054 46447152 -77629020 + ID_B1 SINE B4 46 144 -80 9 939 702 312 124 40 chr9 46447435 46447885 -77628287 + L2a LINE L2 2935 3422 -4 9 939 200 135 27 0 chr9 46448057 46448094 -77628078 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 9 939 742 237 65 6 chr9 46448326 46448496 -77627676 - ID_B1 SINE B4 -38 186 7 9 939 283 284 80 111 chr9 46449108 46449265 -77626907 - MLT1H2 LTR MaLR 0 549 352 9 939 1383 170 211 3 chr9 46449277 46449426 -77626746 + ORR1C2 LTR MaLR 1 162 -222 9 939 582 15 0 0 chr9 46449426 46449493 -77626679 + (TC)n Simple_repeat Simple_repeat 1 67 0 9 939 1383 170 211 3 chr9 46449493 46449661 -77626511 + ORR1C2 LTR MaLR 163 383 -1 9 939 255 287 138 9 chr9 46449776 46449885 -77626287 - MLT1H2 LTR MaLR -325 224 102 9 939 23 33 0 0 chr9 46450577 46450607 -77625565 + AT_rich Low_complexity Low_complexity 1 30 0 9 939 512 318 102 8 chr9 46450607 46450873 -77625299 - B4 SINE B4 0 292 2 9 939 323 271 0 17 chr9 46451332 46451452 -77624720 + GA-rich Low_complexity Low_complexity 1 118 0 9 939 354 80 0 0 chr9 46451541 46451591 -77624581 + (T)n Simple_repeat Simple_repeat 1 50 0 9 939 908 283 126 20 chr9 46452056 46452413 -77623759 - MTD LTR MaLR -16 403 9 9 939 366 279 49 55 chr9 46452789 46452941 -77623231 + MIRb SINE MIR 26 169 -39 9 939 357 318 208 9 chr9 46453068 46453284 -77622888 - MLT1J2 LTR MaLR -182 266 8 9 939 191 256 0 0 chr9 46453370 46453409 -77622763 + MIRb SINE MIR 224 262 -6 9 939 303 256 53 99 chr9 46454005 46454157 -77622015 + MIR SINE MIR 53 197 -65 9 939 360 0 0 0 chr9 46454194 46454234 -77621938 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 9 939 1094 161 108 20 chr9 46454328 46454531 -77621641 + URR1B DNA MER1_type 5 225 0 9 939 225 269 44 15 chr9 46454919 46454987 -77621185 - MLT2B3 LTR ERVL -484 70 1 9 939 371 298 11 0 chr9 46455198 46455292 -77620880 + MLT1A0 LTR MaLR 269 363 -2 9 939 393 22 0 0 chr9 46456274 46456320 -77619852 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 939 536 258 78 8 chr9 46456320 46456449 -77619723 - RSINE1 SINE B4 -26 139 2 9 939 400 319 27 55 chr9 46456893 46457039 -77619133 + B4A SINE B4 2 143 -149 9 939 510 61 0 0 chr9 46457039 46457105 -77619067 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 939 252 332 10 24 chr9 46457280 46457391 -77618781 - MLT1A LTR MaLR -54 354 224 9 939 636 250 37 43 chr9 46458321 46458509 -77617663 - MER53 DNA hAT -5 188 2 9 939 570 279 14 54 chr9 46459085 46459233 -77616939 + B3A SINE B2 2 143 -55 9 939 799 129 11 33 chr9 46459840 46460024 -77616148 + GA-rich Low_complexity Low_complexity 1 180 0 9 939 849 52 45 34 chr9 46459987 46460165 -77616007 + (GA)n Simple_repeat Simple_repeat 1 180 0 9 939 635 140 46 12 chr9 46460161 46460334 -77615838 + GA-rich Low_complexity Low_complexity 1 179 0 9 939 829 109 28 17 chr9 46460300 46460391 -77615781 + polypurine Low_complexity Low_complexity 2 91 0 9 939 999 34 27 54 chr9 46460391 46460576 -77615596 + (GA)n Simple_repeat Simple_repeat 1 180 0 9 939 829 109 28 17 chr9 46460576 46460661 -77615511 + polypurine Low_complexity Low_complexity 92 179 0 9 939 205 102 85 0 chr9 46460661 46460720 -77615452 + GA-rich Low_complexity Low_complexity 4 67 0 9 939 900 45 5 59 chr9 46460733 46460920 -77615252 + (GGAGA)n Simple_repeat Simple_repeat 2 178 0 9 939 22 0 0 0 chr9 46461185 46461207 -77614965 + AT_rich Low_complexity Low_complexity 1 22 0 9 939 323 308 254 0 chr9 46462408 46462593 -77613579 + MIR SINE MIR 31 262 0 9 939 438 335 69 21 chr9 46462655 46462870 -77613302 - MIRb SINE MIR -26 242 11 9 939 445 346 77 66 chr9 46463633 46463980 -77612192 - ORR1E LTR MaLR 0 359 9 9 939 624 297 49 6 chr9 46463980 46464163 -77612009 - RMER30 DNA MER1_type 0 202 12 9 939 405 102 0 0 chr9 46465378 46465437 -77610735 + (CCA)n Simple_repeat Simple_repeat 1 59 0 9 939 236 53 26 0 chr9 46465441 46465479 -77610693 + (CAA)n Simple_repeat Simple_repeat 1 39 0 9 939 254 308 160 0 chr9 46466142 46466298 -77609874 + MIRc SINE MIR 88 268 0 9 939 236 306 0 0 chr9 46466541 46466603 -77609569 + CT-rich Low_complexity Low_complexity 6 67 0 9 939 423 38 0 0 chr9 46466653 46466706 -77609466 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1 939 1591 199 35 85 chr9 46466738 46467160 -77609012 - Lx5 LINE L1 -1 7049 6649 1 939 388 309 7 0 chr9 46467164 46467260 -77608912 - B1F SINE Alu -19 101 2 1 939 180 0 0 0 chr9 46468072 46468092 -77608080 + (TTG)n Simple_repeat Simple_repeat 1 20 0 1 939 273 241 37 37 chr9 46469809 46469827 -77606345 + ID SINE ID 63 80 -144 1 939 212 260 182 0 chr9 46469827 46469904 -77606268 + B1_Mus2 SINE Alu 1 91 -56 1 939 226 351 26 0 chr9 46469983 46470060 -77606112 - L2b LINE L2 -4 3371 3293 1 939 304 328 57 25 chr9 46470077 46470199 -77605973 + L2 LINE L2 2697 2822 -597 1 939 832 279 18 5 chr9 46470267 46470487 -77605685 + ID_B1 SINE B4 2 224 0 1 939 180 111 0 0 chr9 46470492 46470519 -77605653 + (CAG)n Simple_repeat Simple_repeat 1 27 0 1 939 611 40 0 0 chr9 46470671 46470746 -77605426 + B1_Mus2 SINE Alu 1 75 -72 1 939 1037 191 55 5 chr9 46470749 46470949 -77605223 - B3 SINE B2 -6 210 1 1 939 414 0 0 0 chr9 46471207 46471253 -77604919 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 939 198 0 0 0 chr9 46472889 46472911 -77603261 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 1 939 308 209 12 0 chr9 46473585 46473671 -77602501 + (CAT)n Simple_repeat Simple_repeat 3 89 0 1 939 357 62 0 0 chr9 46473680 46473728 -77602444 + (CCA)n Simple_repeat Simple_repeat 3 50 0 1 939 440 169 0 14 chr9 46475166 46475238 -77600934 - ID4_ SINE ID -11 72 2 1 939 371 323 0 10 chr9 46475264 46475361 -77600811 - PB1D10 SINE Alu -12 105 10 1 939 235 284 62 24 chr9 46476499 46476655 -77599517 - MIRc SINE MIR -19 189 38 1 939 307 319 281 53 chr9 46476823 46477060 -77599112 + MLT1J1 LTR MaLR 152 442 -2 1 939 455 202 238 37 chr9 46477110 46477274 -77598898 + B3A SINE B2 1 197 -1 1 939 348 269 124 53 chr9 46478277 46478446 -77597726 - RMER15 LTR ERVL -3 572 392 1 939 296 190 0 12 chr9 46478452 46478532 -77597640 + (ATG)n Simple_repeat Simple_repeat 2 80 0 1 939 286 264 71 62 chr9 46479145 46479258 -77596914 + MER104 DNA Tc2 30 143 -38 1 939 192 135 0 0 chr9 46480629 46480666 -77595506 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1 939 704 274 136 39 chr9 46480841 46481172 -77595000 + MLT1D LTR MaLR 143 505 0 1 939 219 69 0 0 chr9 46481496 46481525 -77594647 + (CAGCC)n Simple_repeat Simple_repeat 4 32 0 1 939 290 325 267 30 chr9 46481664 46482409 -77593763 + L2 LINE L2 1423 2344 -1075 1 939 379 328 118 58 chr9 46482962 46483360 -77592812 + L2 LINE L2 2443 2864 -555 1 939 450 0 0 0 chr9 46483545 46483595 -77592577 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 939 252 0 0 0 chr9 46483691 46483719 -77592453 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 939 275 219 23 47 chr9 46484177 46484263 -77591909 - MLT1A LTR MaLR -2 363 280 1 939 339 297 25 67 chr9 46484355 46484474 -77591698 - MLT1A LTR MaLR -212 162 49 1 939 486 0 0 0 chr9 46484476 46484530 -77591642 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 939 343 298 64 32 chr9 46485136 46485261 -77590911 + MLT1A1 LTR MaLR 268 396 -12 1 939 348 269 60 37 chr9 46485268 46485455 -77590717 - MLT1E1 LTR MaLR -299 381 182 1 939 1113 206 70 16 chr9 46485750 46486066 -77590106 - RMER17C LTR ERVK -1 409 77 1 939 207 0 0 0 chr9 46486066 46486089 -77590083 + (GAA)n Simple_repeat Simple_repeat 2 24 0 1 939 873 217 16 12 chr9 46486089 46486332 -77589840 - RMER17C LTR ERVK -166 244 1 1 939 385 206 0 0 chr9 46486681 46486744 -77589428 + RSINE1 SINE B4 3 65 -100 1 939 450 0 0 0 chr9 46486750 46486800 -77589372 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 939 1582 235 50 76 chr9 46487068 46487450 -77588722 + MTEa LTR MaLR 6 377 -2 1 939 203 182 0 0 chr9 46487654 46487687 -77588485 + T-rich Low_complexity Low_complexity 2 34 0 1 939 306 304 21 11 chr9 46488368 46488461 -77587711 - MIR3 SINE MIR -29 179 86 1 939 286 247 0 64 chr9 46489016 46489094 -77587078 - ID4 SINE ID -9 74 2 1 939 861 297 84 27 chr9 46489536 46489868 -77586304 + MTE2a LTR MaLR 17 367 -12 1 939 1377 119 18 9 chr9 46489954 46490175 -77585997 - URR1B DNA MER1_type -1 224 2 1 939 555 323 80 68 chr9 46490381 46490793 -77585379 - L3 LINE CR1 -605 3884 3468 1 939 228 35 0 0 chr9 46490793 46490822 -77585350 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 1 939 245 320 41 2 chr9 46491085 46491168 -77585004 + LTR31 LTR ERV1 302 376 -243 1 939 530 189 0 0 chr9 46491249 46491337 -77584835 - B4A SINE B4 -2 290 203 1 939 1299 272 23 78 chr9 46491337 46491736 -77584436 - MTE2b LTR MaLR -2 377 1 1 939 794 291 56 0 chr9 46491736 46491930 -77584242 - B4A SINE B4 -83 209 5 1 939 429 351 11 45 chr9 46491933 46492109 -77584063 + LTR31 LTR ERV1 433 602 -17 1 939 196 14 219 0 chr9 46492930 46493003 -77583169 + (CCCTG)n Simple_repeat Simple_repeat 1 89 0 1 939 208 300 210 0 chr9 46493039 46493139 -77583033 + MIRc SINE MIR 11 131 -137 1 939 624 14 0 0 chr9 46494478 46494551 -77581621 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 939 1161 118 0 0 chr9 46494934 46495112 -77581060 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1 939 583 236 147 61 chr9 46495141 46495339 -77580833 - B3 SINE B2 0 216 2 1 939 253 262 139 54 chr9 46495471 46495600 -77580572 - PB1D10 SINE Alu 0 149 10 1 939 404 293 74 102 chr9 46497006 46497314 -77578858 + ORR1E LTR MaLR 54 366 -13 1 939 245 350 147 23 chr9 46497895 46498202 -77577970 + L3 LINE CR1 4017 4361 -128 1 939 217 211 147 2 chr9 46498652 46498715 -77577457 + MIRc SINE MIR 24 93 -183 1 939 448 333 23 0 chr9 46499155 46499287 -77576885 + B1F2 SINE Alu 9 143 -6 1 939 213 307 99 0 chr9 46499899 46500000 -77576172 - MIR SINE MIR -3 259 149 1 939 470 309 75 22 chr9 46500570 46500838 -77575334 + MER33 DNA MER1_type 7 249 -75 1 939 3527 263 175 99 chr9 46500962 46502915 -77573257 + L1MA5 LINE L1 2413 4564 -1579 2 939 249 271 17 0 chr9 46502915 46502974 -77573198 - ID4 SINE ID -2 81 22 3 939 3527 263 175 99 chr9 46502974 46503423 -77572749 + L1MA5 LINE L1 4565 5061 -1082 2 939 1630 229 83 82 chr9 46503459 46504059 -77572113 + L1MA5 LINE L1 5692 6292 -8 2 939 234 0 0 0 chr9 46504825 46504851 -77571321 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 4 939 831 271 10 5 chr9 46504880 46505088 -77571084 - B4A SINE B4 -2 290 82 5 939 440 284 124 11 chr9 46505287 46505472 -77570700 - L1MC5 LINE L1 -55 7906 7701 6 939 233 257 18 54 chr9 46505813 46505924 -77570248 - MTE2a LTR MaLR 0 379 273 7 939 444 19 0 0 chr9 46506395 46506448 -77569724 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 939 888 283 74 15 chr9 46506456 46506725 -77569447 - B4A SINE B4 -7 285 1 9 939 237 282 64 58 chr9 46506736 46506924 -77569248 - L1M5 LINE L1 -521 5923 5735 1 939 465 284 21 27 chr9 46507136 46507324 -77568848 - L1M5 LINE L1 -824 5322 5136 1 939 579 170 0 28 chr9 46507645 46507754 -77568418 + B1_Mur1 SINE Alu 38 143 -6 1 939 290 290 160 27 chr9 46507770 46508064 -77568108 - L1M5 LINE L1 -1538 4608 4276 1 939 495 289 152 75 chr9 46508172 46508509 -77567663 - L1M5 LINE L1 -2207 3939 3570 1 939 340 240 13 0 chr9 46508509 46508584 -77567588 - ID4_ SINE ID -6 77 2 1 939 495 289 152 75 chr9 46508584 46508646 -77567526 - L1M5 LINE L1 -2577 3569 3509 1 939 497 219 82 11 chr9 46508666 46508879 -77567293 - L1M5 LINE L1 -2187 3959 3750 1 939 22 0 0 0 chr9 46508891 46508913 -77567259 + AT_rich Low_complexity Low_complexity 1 22 0 1 939 201 74 0 0 chr9 46508927 46508954 -77567218 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 939 1047 94 0 7 chr9 46508954 46509094 -77567078 - B1_Mus2 SINE Alu -8 139 1 1 939 818 148 23 0 chr9 46509234 46509410 -77566762 + GA-rich Low_complexity Low_complexity 1 180 0 1 939 190 0 0 62 chr9 46509507 46509539 -77566633 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 1 939 441 0 0 0 chr9 46509679 46509728 -77566444 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 1 939 549 99 0 0 chr9 46509728 46509808 -77566364 + (CTCA)n Simple_repeat Simple_repeat 3 83 0 2 939 514 269 69 0 chr9 46509808 46509953 -77566219 - RSINE1 SINE B4 -9 156 2 2 939 242 151 18 70 chr9 46511237 46511294 -77564878 + ID_B1 SINE B4 169 222 -2 2 939 245 160 0 74 chr9 46511243 46511297 -77564875 + PB1D7 SINE Alu 69 118 -2 2 939 206 262 0 71 chr9 46512736 46512806 -77563366 + MIRm SINE MIR 207 271 -5 2 939 804 293 90 30 chr9 46513203 46513537 -77562635 - MLT1A1 LTR MaLR -25 383 30 2 939 1248 7 0 0 chr9 46513824 46513965 -77562207 + (GAA)n Simple_repeat Simple_repeat 2 142 0 2 939 270 176 0 0 chr9 46514431 46514482 -77561690 + CT-rich Low_complexity Low_complexity 2 52 0 2 939 298 410 7 7 chr9 46515890 46516025 -77560147 - LTR50 LTR ERVL -253 542 408 2 939 264 256 44 55 chr9 46516165 46516256 -77559916 - LTR50 LTR ERVL -606 189 100 2 939 981 196 47 49 chr9 46516267 46516675 -77559497 - RMER6B LTR ERVK -5 456 1 3 939 500 152 16 33 chr9 46517110 46517293 -77558879 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 939 750 160 21 12 chr9 46517317 46517747 -77558425 + (TG)n Simple_repeat Simple_repeat 1 433 0 3 939 561 234 0 0 chr9 46518039 46518146 -77558026 - PB1D10 SINE Alu 0 117 11 3 939 228 273 36 83 chr9 46518074 46518158 -77558014 - MT2B2 LTR ERVL -344 240 161 3 939 2297 292 25 41 chr9 46518160 46518895 -77557277 - ERVL-E-int LTR ERVL -749 4918 4196 3 939 1121 208 249 3 chr9 46519912 46520245 -77555927 - MTD LTR MaLR 0 419 5 3 939 258 307 79 0 chr9 46521012 46521113 -77555059 + MLT1A1 LTR MaLR 1 109 -299 3 939 244 279 15 0 chr9 46521839 46521907 -77554265 + CT-rich Low_complexity Low_complexity 5 73 0 3 939 250 194 32 16 chr9 46522324 46522387 -77553785 + MLT1A1 LTR MaLR 343 406 -2 3 939 1248 41 0 0 chr9 46522941 46523088 -77553084 - B1_Mus2 SINE Alu 0 147 1 3 939 537 16 0 0 chr9 46523158 46523220 -77552952 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 939 1240 350 77 34 chr9 46523402 46524173 -77551999 + MER21B LTR ERV1 12 815 -48 4 939 453 296 67 27 chr9 46524853 46525122 -77551050 + ORR1E LTR MaLR 75 379 0 4 939 320 344 8 0 chr9 46525340 46525462 -77550710 + Charlie10 DNA MER1_type 98 220 -2602 4 939 630 305 184 22 chr9 46525520 46525933 -77550239 + Charlie10 DNA MER1_type 2038 2517 -305 4 939 541 61 24 0 chr9 46526512 46526594 -77549578 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 4 939 1579 298 80 36 chr9 46526630 46527353 -77548819 - ERVL-B4-int LTR ERVL -344 5413 4659 4 939 310 229 102 20 chr9 46527368 46527466 -77548706 - ERVL-B4-int LTR ERVL -3290 2467 2362 4 939 1306 257 31 9 chr9 46527649 46527998 -77548174 + MTE2b LTR MaLR 20 376 -3 4 939 3934 295 45 43 chr9 46528251 46529706 -77546466 - ERVL-B4-int LTR ERVL -3412 2302 845 4 939 269 312 151 8 chr9 46530202 46530441 -77545731 - L2 LINE L2 -685 2734 2462 4 940 764 253 137 43 chr9 46530590 46530912 -77545260 + ORR1E LTR MaLR 6 357 -2 4 940 606 307 72 48 chr9 46531055 46531473 -77544699 - L1MC4 LINE L1 -511 7531 7104 4 940 293 307 20 32 chr9 46532423 46532629 -77543543 - MIRc SINE MIR -33 235 30 5 940 788 100 8 0 chr9 46532912 46533032 -77543140 + (GAAAA)n Simple_repeat Simple_repeat 1 121 0 5 940 1254 251 101 14 chr9 46533464 46533811 -77542361 + MTEb LTR MaLR 1 377 -2 5 940 786 172 7 52 chr9 46533897 46534050 -77542122 + B1_Mus1 SINE Alu 2 147 -1 5 940 207 0 0 0 chr9 46534076 46534099 -77542073 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 940 856 144 12 6 chr9 46534102 46534270 -77541902 + GA-rich Low_complexity Low_complexity 4 172 0 5 940 622 264 78 41 chr9 46534474 46534742 -77541430 - MER44C DNA MER2_type 0 733 456 5 940 545 296 93 0 chr9 46534782 46534954 -77541218 - MER44C DNA MER2_type -545 188 1 5 940 236 178 0 0 chr9 46535120 46535165 -77541007 - RMER30 DNA MER1_type -151 51 7 5 940 263 277 21 11 chr9 46535961 46536056 -77540116 + MLT1K LTR MaLR 499 594 -1 5 940 357 286 92 27 chr9 46537238 46537432 -77538740 - L1MD2 LINE L1 -1791 5994 5781 5 940 1654 238 130 26 chr9 46537518 46538011 -77538161 - MER82 DNA MER2_type -104 549 6 6 940 939 282 68 0 chr9 46538012 46538278 -77537894 + B4A SINE B4 2 285 -7 6 940 4527 112 118 10 chr9 46540400 46541127 -77535045 + L1VL2 LINE L1 128 933 -5402 6 940 354 240 164 0 chr9 46542120 46542224 -77533948 - B3A SINE B2 -77 121 1 6 940 261 286 0 17 chr9 46542756 46542941 -77533231 + (TGG)n Simple_repeat Simple_repeat 1 181 0 6 940 252 0 0 0 chr9 46543279 46543307 -77532865 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 940 274 248 28 28 chr9 46544890 46544998 -77531174 + GA-rich Low_complexity Low_complexity 2 109 0 6 940 26 0 0 0 chr9 46546013 46546039 -77530133 + AT_rich Low_complexity Low_complexity 1 26 0 6 940 213 39 0 0 chr9 46546119 46546145 -77530027 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 940 204 325 162 26 chr9 46546807 46546924 -77529248 + L2b LINE L2 3238 3370 -5 6 940 387 0 0 0 chr9 46546985 46547028 -77529144 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 940 233 262 16 0 chr9 46547367 46547428 -77528744 + C-rich Low_complexity Low_complexity 5 66 0 7 940 683 224 0 13 chr9 46548128 46548436 -77527736 + (TG)n Simple_repeat Simple_repeat 1 303 0 7 940 293 331 68 28 chr9 46548483 46548660 -77527512 + MIRb SINE MIR 71 254 -14 7 940 546 79 0 0 chr9 46549137 46549213 -77526959 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 7 940 3892 141 109 15 chr9 46549833 46550806 -77525366 - L1_Mur2 LINE L1 -3917 1960 889 7 940 602 199 86 22 chr9 46551026 46551165 -77525007 + B1_Mur4 SINE Alu 3 150 0 7 940 200 296 0 36 chr9 46551740 46551796 -77524376 + L2b LINE L2 3295 3348 -27 7 940 393 22 0 0 chr9 46551984 46552030 -77524142 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 940 206 180 0 62 chr9 46552062 46552127 -77524045 + A-rich Low_complexity Low_complexity 4 64 0 7 940 216 216 20 0 chr9 46552255 46552364 -77523808 + CT-rich Low_complexity Low_complexity 1 111 0 8 940 249 247 0 100 chr9 46552365 46552455 -77523717 - PB1D10 SINE Alu -16 101 21 8 940 343 226 38 133 chr9 46552605 46552763 -77523409 + ORR1E LTR MaLR 1 143 -216 8 940 1099 163 99 0 chr9 46552767 46552969 -77523203 - URR1A DNA MER1_type 0 226 5 8 940 316 269 143 9 chr9 46553050 46553155 -77523017 + ORR1E LTR MaLR 255 373 -6 8 940 423 183 0 0 chr9 46554709 46554791 -77521381 + (TG)n Simple_repeat Simple_repeat 2 83 0 8 940 510 234 61 23 chr9 46554878 46555009 -77521163 + B1F1 SINE Alu 2 137 -12 8 940 225 0 0 0 chr9 46555035 46555060 -77521112 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 8 940 3304 134 19 0 chr9 46555669 46556184 -77519988 - RLTR11A LTR ERVK -3 525 1 8 940 453 181 112 0 chr9 46556185 46556301 -77519871 - MYSERV16_I-int LTR ERVK -1 2325 2197 8 940 278 143 0 0 chr9 46556417 46556466 -77519706 - RLTR11A LTR ERVK -479 49 1 8 940 192 273 57 57 chr9 46556633 46556703 -77519469 + L2b LINE L2 3213 3282 -93 8 940 432 67 0 0 chr9 46556719 46556779 -77519393 + (TC)n Simple_repeat Simple_repeat 2 61 0 9 940 1065 280 124 12 chr9 46560729 46561214 -77514958 + L1MA5 LINE L1 5715 6253 -47 9 940 180 77 0 0 chr9 46561214 46561240 -77514932 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 940 413 335 60 6 chr9 46561296 46561464 -77514708 + MLT1A0 LTR MaLR 4 180 -185 9 940 248 267 78 10 chr9 46561821 46561923 -77514249 - L3 LINE CR1 -320 4169 4061 9 940 377 298 31 46 chr9 46561927 46562057 -77514115 - MER45A DNA Tip100 -1 177 50 9 940 200 262 16 0 chr9 46562134 46562195 -77513977 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 940 908 298 55 4 chr9 46562200 46562473 -77513699 - B4A SINE B4 -5 287 1 9 940 215 333 42 50 chr9 46562490 46562610 -77513562 - L3 LINE CR1 -501 3988 3870 9 940 200 287 80 130 chr9 46562797 46562897 -77513275 - L2c LINE L2 0 3387 3293 9 940 769 271 0 19 chr9 46562907 46563061 -77513111 + RSINE1 SINE B4 2 152 -13 9 940 1122 63 14 0 chr9 46563142 46563284 -77512888 + B1_Mus1 SINE Alu 1 144 -4 1 940 762 250 127 68 chr9 46563450 46563789 -77512383 - ORR1E LTR MaLR 0 359 1 1 940 233 359 73 36 chr9 46564679 46564789 -77511383 - L2b LINE L2 -6 3369 3256 1 940 298 257 163 0 chr9 46564873 46564969 -77511203 + PB1D7 SINE Alu 1 120 0 1 940 813 296 98 34 chr9 46565163 46565460 -77510712 + MLT1J LTR MaLR 36 351 -161 1 940 277 297 0 0 chr9 46565583 46565657 -77510515 + MIR SINE MIR 184 257 -5 1 940 292 259 45 34 chr9 46567072 46567160 -77509012 + MLT1B LTR MaLR 1 89 -301 1 940 206 167 0 23 chr9 46567373 46567416 -77508756 + CT-rich Low_complexity Low_complexity 1 42 0 1 940 324 0 0 0 chr9 46567454 46567490 -77508682 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 1 940 330 250 0 0 chr9 46567566 46567634 -77508538 - Lx8 LINE L1 -260 7213 7146 1 940 693 286 34 78 chr9 46567636 46567905 -77508267 + MLT1B LTR MaLR 134 390 0 1 940 366 331 41 0 chr9 46568485 46568606 -77507566 + MLT1L LTR MaLR 33 158 -452 1 940 541 297 104 9 chr9 46568635 46568856 -77507316 + MLT1L LTR MaLR 216 457 -153 1 940 971 112 7 0 chr9 46568865 46569017 -77507155 + (GGA)n Simple_repeat Simple_repeat 3 155 0 1 940 932 337 79 15 chr9 46569239 46569712 -77506460 + MLT2B1 LTR ERVL 7 495 -20 1 940 351 331 45 103 chr9 46569722 46570277 -77505895 - L1MEc LINE L1 -3916 2484 1962 1 940 200 252 56 21 chr9 46570278 46570420 -77505752 + (TCTA)n Simple_repeat Simple_repeat 4 150 0 1 940 900 99 20 0 chr9 46571409 46571560 -77504612 + (TCTA)n Simple_repeat Simple_repeat 2 155 0 1 940 252 0 0 0 chr9 46571607 46571635 -77504537 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 1 940 758 229 123 21 chr9 46572472 46572659 -77503513 - MTEa LTR MaLR 0 379 174 1 940 666 287 30 0 chr9 46572811 46572975 -77503197 - MTEa LTR MaLR -210 169 1 1 940 281 347 41 0 chr9 46573045 46573143 -77503029 - MIRb SINE MIR -141 127 26 1 940 318 284 22 95 chr9 46573284 46573463 -77502709 - MIR3 SINE MIR -5 203 38 1 940 499 321 167 57 chr9 46573625 46573978 -77502194 - MLT1J LTR MaLR -109 403 12 1 940 329 344 11 0 chr9 46574170 46574263 -77501909 - RMER15 LTR ERVL -111 464 371 1 940 454 314 101 46 chr9 46574303 46574431 -77501741 - Lx8 LINE L1 -303 7170 7040 1 940 2365 156 60 10 chr9 46574431 46574832 -77501340 - MTC LTR MaLR 0 421 1 1 940 454 314 101 46 chr9 46574832 46574920 -77501252 - Lx8 LINE L1 -434 7039 6942 1 940 1759 211 79 56 chr9 46574954 46575475 -77500697 - MT2A LTR ERVL 0 533 1 1 940 519 17 0 0 chr9 46576489 46576549 -77499623 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 940 198 0 0 0 chr9 46576549 46576570 -77499602 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 940 415 275 250 58 chr9 46577403 46577598 -77498574 + B4A SINE B4 1 232 -60 1 940 1972 158 60 55 chr9 46577598 46577980 -77498192 + ORR1C2 LTR MaLR 1 384 0 1 940 415 185 0 90 chr9 46577980 46577996 -77498176 + B4A SINE B4 233 248 -44 1 940 224 354 0 0 chr9 46578009 46578088 -77498084 + L2a LINE L2 3338 3416 -10 1 940 243 226 0 0 chr9 46578441 46578494 -77497678 + (TGGG)n Simple_repeat Simple_repeat 3 55 0 1 940 819 135 0 0 chr9 46579708 46579841 -77496331 + (GA)n Simple_repeat Simple_repeat 1 133 0 1 940 193 304 0 18 chr9 46580046 46580103 -77496069 - MIRm SINE MIR -15 261 206 1 940 701 301 39 25 chr9 46580143 46580347 -77495825 + B3 SINE B2 8 214 -2 1 940 240 86 0 0 chr9 46580349 46580384 -77495788 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 1 940 257 250 0 0 chr9 46580567 46580623 -77495549 + MER112 DNA MER1_type 1 56 -205 1 940 208 200 15 15 chr9 46580884 46580950 -77495222 + GA-rich Low_complexity Low_complexity 5 70 0 1 940 368 342 73 17 chr9 46581489 46581721 -77494451 - MLT1D LTR MaLR -6 499 255 1 940 792 0 0 0 chr9 46581733 46581821 -77494351 + (TTCTC)n Simple_repeat Simple_repeat 4 91 0 1 940 194 324 38 75 chr9 46582443 46582523 -77493649 - L2 LINE L2 -360 3059 2983 1 940 1825 233 29 37 chr9 46582632 46583086 -77493086 + Charlie4a DNA MER1_type 39 488 -20 1 940 212 327 64 22 chr9 46583132 46583367 -77492805 + L2b LINE L2 2924 3166 -221 1 940 279 0 0 0 chr9 46583882 46583913 -77492259 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 940 422 18 18 0 chr9 46583952 46584007 -77492165 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 940 393 70 0 0 chr9 46584010 46584067 -77492105 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 1 940 243 370 101 7 chr9 46585023 46585162 -77491010 - MIRc SINE MIR -100 168 17 1 940 3197 179 22 45 chr9 46585443 46586081 -77490091 - RMER20B LTR ERVK -4 623 1 1 940 1573 122 13 0 chr9 46586342 46586572 -77489600 + ORR1A2 LTR MaLR 1 233 -94 1 940 360 64 0 0 chr9 46586574 46586621 -77489551 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 940 276 167 31 62 chr9 46586744 46586808 -77489364 - MIRb SINE MIR -80 188 127 1 940 245 286 0 16 chr9 46587139 46587203 -77488969 + C-rich Low_complexity Low_complexity 1 63 0 1 940 240 265 0 0 chr9 46587214 46587263 -77488909 - ID4_ SINE ID -28 55 7 1 940 317 292 21 35 chr9 46587280 46587422 -77488750 - B1F1 SINE Alu -9 140 1 1 940 459 0 0 0 chr9 46589390 46589441 -77486731 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1 940 891 300 35 18 chr9 46589453 46589738 -77486434 - B4A SINE B4 -2 290 1 1 940 189 0 0 0 chr9 46590479 46590500 -77485672 + (CAGG)n Simple_repeat Simple_repeat 4 24 0 1 940 361 306 27 68 chr9 46590623 46590770 -77485402 + MER63A DNA AcHobo 1 141 -69 1 940 369 0 0 0 chr9 46591936 46591977 -77484195 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 940 188 308 45 15 chr9 46593205 46593271 -77482901 + MIRc SINE MIR 4 71 -197 1 940 1249 269 162 15 chr9 46593274 46593738 -77482434 + MLT1H LTR MaLR 13 544 -5 1 940 612 225 193 74 chr9 46594385 46594654 -77481518 + L1MB8 LINE L1 5869 6169 -9 1 940 307 333 52 0 chr9 46594814 46594949 -77481223 - B1F1 SINE Alu -5 144 3 1 940 2135 144 17 17 chr9 46595541 46595900 -77480272 - ORR1B2 LTR MaLR -8 359 1 1 940 765 322 88 24 chr9 46597891 46598219 -77477953 - ORR1E LTR MaLR -5 354 6 1 940 182 385 0 0 chr9 46598799 46598864 -77477308 - L2b LINE L2 0 3375 3311 1 940 432 0 0 0 chr9 46600287 46600335 -77475837 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 940 1278 147 13 40 chr9 46600365 46600592 -77475580 + URR1B DNA MER1_type 5 225 0 1 940 1950 237 98 48 chr9 46601072 46601605 -77474567 + Zaphod DNA Tip100 50 614 -3417 1 940 1043 265 70 18 chr9 46601605 46601932 -77474240 - MER2 DNA MER2_type -1 344 1 1 940 1950 237 98 48 chr9 46601932 46601957 -77474215 + Zaphod DNA Tip100 615 636 -3395 1 940 1318 264 65 50 chr9 46601962 46602528 -77473644 + Zaphod DNA Tip100 3333 3907 -124 1 940 858 309 51 14 chr9 46602555 46602847 -77473325 - MLT1A0 LTR MaLR -53 312 10 1 940 274 312 88 18 chr9 46602857 46602971 -77473201 + Zaphod DNA Tip100 3904 4025 -6 1 940 225 270 0 73 chr9 46603153 46603221 -77472951 - ID4_ SINE ID -15 68 6 1 940 268 284 15 0 chr9 46603237 46603304 -77472868 - MIR SINE MIR -121 141 74 1 940 226 370 0 35 chr9 46603589 46603732 -77472440 + MER121 Unknown Unknown 56 193 -219 1 940 33764 66 1 3 chr9 46604176 46609358 -77466814 + L1Md_F2 LINE L1 415 5586 -297 1 940 8740 23 0 0 chr9 46609358 46610340 -77465832 + L1Md_F2 LINE L1 5587 6568 -14 1 940 33 25 0 0 chr9 46610376 46610416 -77465756 + AT_rich Low_complexity Low_complexity 1 40 0 1 940 238 386 23 8 chr9 46610568 46610701 -77465471 - B1F1 SINE Alu -5 144 10 1 940 298 353 85 70 chr9 46610833 46611162 -77465010 - LTR85c LTR Gypsy? -85 738 405 1 940 235 342 129 19 chr9 46611269 46611424 -77464748 + MLT1J1 LTR MaLR 22 193 -251 1 940 298 294 114 32 chr9 46611482 46611605 -77464567 + MLT1J1 LTR MaLR 244 376 -68 1 940 2362 208 58 18 chr9 46611897 46612396 -77463776 + MT2A LTR ERVL 3 521 -12 1 940 432 349 30 35 chr9 46612640 46612839 -77463333 + MIRb SINE MIR 57 254 -14 1 940 489 323 103 54 chr9 46615530 46615733 -77460439 - MER58A DNA MER1_type 0 224 12 1 940 342 0 0 0 chr9 46616232 46616270 -77459902 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 940 264 315 64 71 chr9 46616285 46616425 -77459747 + L2c LINE L2 3215 3353 -34 1 940 198 150 0 0 chr9 46616694 46616734 -77459438 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1 940 314 231 145 76 chr9 46616944 46617089 -77459083 - ORR1E LTR MaLR -17 342 188 1 940 934 226 82 22 chr9 46617350 46617581 -77458591 - ORR1E LTR MaLR -113 246 2 1 940 486 0 0 0 chr9 46617617 46617671 -77458501 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 940 441 0 0 0 chr9 46617671 46617719 -77458453 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 940 519 17 0 0 chr9 46618144 46618204 -77457968 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 940 198 310 122 11 chr9 46619503 46619624 -77456548 + MIR SINE MIR 4 135 -73 1 940 330 277 162 0 chr9 46619843 46619991 -77456181 + MIRb SINE MIR 97 268 0 1 940 751 273 96 36 chr9 46620448 46620782 -77455390 + ORR1E LTR MaLR 6 359 0 1 940 1196 239 57 40 chr9 46621133 46621482 -77454690 - Lx8 LINE L1 -334 7139 6785 1 940 235 331 164 8 chr9 46623473 46623601 -77452571 + MIRb SINE MIR 75 222 -46 1 940 771 289 90 19 chr9 46623981 46624249 -77451923 + B4 SINE B4 3 289 -3 1 940 441 103 0 0 chr9 46624266 46624334 -77451838 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 940 508 320 54 39 chr9 46624480 46624685 -77451487 + MIR SINE MIR 21 228 -34 1 940 315 372 37 0 chr9 46625798 46626016 -77450156 - L1ME4a LINE L1 -254 5870 5645 1 940 310 253 40 0 chr9 46626204 46626279 -77449893 - L1ME4a LINE L1 -707 5417 5340 1 940 671 247 30 37 chr9 46626296 46626460 -77449712 + RSINE1 SINE B4 3 165 0 1 940 238 224 0 0 chr9 46626461 46626510 -77449662 + (CATA)n Simple_repeat Simple_repeat 4 52 0 1 940 213 156 0 22 chr9 46626999 46627045 -77449127 + A-rich Low_complexity Low_complexity 1 45 0 2 940 382 225 0 82 chr9 46627075 46627172 -77449000 + RSINE1 SINE B4 46 134 -31 2 940 258 328 19 32 chr9 46627419 46627543 -77448629 - MIR3 SINE MIR -24 184 66 2 940 251 307 101 11 chr9 46628349 46628438 -77447734 + MIR3 SINE MIR 13 109 -99 2 940 229 233 16 32 chr9 46628626 46628688 -77447484 + C-rich Low_complexity Low_complexity 1 61 0 2 940 327 250 8 134 chr9 46628723 46628857 -77447315 - PB1 SINE Alu -7 120 4 2 940 2228 110 6 6 chr9 46629152 46629471 -77446701 - ORR1A2 LTR MaLR -8 319 1 2 940 330 87 0 0 chr9 46629562 46629608 -77446564 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 2 940 275 364 66 30 chr9 46629773 46629940 -77446232 - MIR SINE MIR -81 181 9 2 940 247 320 0 0 chr9 46630266 46630344 -77445828 + (TATG)n Simple_repeat Simple_repeat 3 80 0 2 940 2616 135 35 2 chr9 46630434 46630836 -77445336 + MTC LTR MaLR 1 415 -6 2 940 426 186 0 0 chr9 46630842 46630912 -77445260 - B4A SINE B4 -220 72 3 2 940 187 0 0 108 chr9 46632022 46632059 -77444113 + (TCTCTG)n Simple_repeat Simple_repeat 3 35 0 2 940 269 350 105 57 chr9 46632339 46632672 -77443500 + ORR1E LTR MaLR 8 356 -3 2 940 293 0 27 0 chr9 46632730 46632767 -77443405 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 940 293 259 111 7 chr9 46634303 46634447 -77441725 - L1ME2z LINE L1 -13 6431 6273 2 940 643 238 6 14 chr9 46634449 46634959 -77441213 + (TCCA)n Simple_repeat Simple_repeat 1 505 0 2 940 409 298 31 82 chr9 46634961 46635217 -77440955 - L1ME2z LINE L1 -126 6318 6076 2 940 216 269 56 133 chr9 46635423 46635513 -77440659 + B1F SINE Alu 16 98 -51 2 940 459 0 0 0 chr9 46635732 46635783 -77440389 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 940 797 266 26 48 chr9 46635973 46636285 -77439887 - HAL1 LINE L1 -1162 1345 1041 2 940 298 275 0 12 chr9 46636414 46636495 -77439677 + (TATG)n Simple_repeat Simple_repeat 1 80 0 2 940 1068 260 19 44 chr9 46636510 46636780 -77439392 - B4 SINE B4 -5 287 25 2 940 840 289 30 0 chr9 46636972 46637173 -77438999 + B3 SINE B2 9 215 -1 2 940 323 299 26 77 chr9 46637242 46637398 -77438774 - HAL1 LINE L1 -1697 810 663 2 940 279 0 0 0 chr9 46638145 46638176 -77437996 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 940 222 128 0 0 chr9 46638195 46638234 -77437938 + (CAAAC)n Simple_repeat Simple_repeat 5 43 0 2 940 195 139 0 0 chr9 46638350 46638386 -77437786 + (C)n Simple_repeat Simple_repeat 1 36 0 2 940 328 294 8 32 chr9 46638478 46638601 -77437571 + G-rich Low_complexity Low_complexity 5 124 0 2 940 282 73 0 0 chr9 46638689 46638730 -77437442 + (TTG)n Simple_repeat Simple_repeat 1 41 0 2 940 180 0 0 0 chr9 46639585 46639605 -77436567 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 940 723 142 22 11 chr9 46639822 46640000 -77436172 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 940 736 146 6 22 chr9 46640011 46640193 -77435979 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 940 206 255 59 0 chr9 46640524 46640575 -77435597 + MIRm SINE MIR 97 150 -126 2 940 693 206 0 114 chr9 46640660 46640835 -77435337 - MIR SINE MIR -31 231 77 2 940 276 53 0 0 chr9 46642704 46642742 -77433430 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 940 3441 28 8 0 chr9 46643975 46644368 -77431804 - MTA_Mm LTR MaLR 0 396 1 2 940 1235 61 0 0 chr9 46644919 46645067 -77431105 - B1_Mus1 SINE Alu 0 148 1 2 940 3287 152 44 18 chr9 46645220 46645790 -77430382 - RMER4B LTR ERVK 0 585 1 2 940 201 74 0 0 chr9 46645872 46645899 -77430273 + (ACTG)n Simple_repeat Simple_repeat 4 30 0 2 940 1289 146 18 18 chr9 46645955 46646179 -77429993 - URR1A DNA MER1_type 0 226 3 2 940 310 306 149 6 chr9 46646451 46646625 -77429547 - MLT1J1 LTR MaLR -13 435 237 2 940 8687 53 2 0 chr9 46646629 46647731 -77428441 - L1_Mm LINE L1 -70 5813 4710 2 940 403 342 39 30 chr9 46647748 46647954 -77428218 - MLT1J1 LTR MaLR -229 215 15 2 940 441 0 0 0 chr9 46649464 46649513 -77426659 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 940 31 0 0 0 chr9 46650231 46650262 -77425910 + AT_rich Low_complexity Low_complexity 1 31 0 2 940 1368 52 0 0 chr9 46650447 46650620 -77425552 + (TTCTC)n Simple_repeat Simple_repeat 3 175 0 2 940 894 294 55 11 chr9 46650626 46650898 -77425274 - B4A SINE B4 -8 284 1 2 940 210 250 42 56 chr9 46650975 46651047 -77425125 - MER5A DNA MER1_type -118 71 1 2 940 230 371 58 19 chr9 46652156 46652310 -77423862 + L3 LINE CR1 4253 4412 -77 2 940 208 298 70 39 chr9 46652412 46652541 -77423631 - MIRb SINE MIR -115 153 21 2 940 677 320 117 41 chr9 46653971 46654313 -77421859 - MLT1A LTR MaLR 0 374 7 2 940 454 305 19 19 chr9 46654319 46654473 -77421699 - MLT1B LTR MaLR -236 154 1 2 940 181 300 0 0 chr9 46655493 46655543 -77420629 - MIR3 SINE MIR -15 193 144 2 940 782 255 219 67 chr9 46655677 46656156 -77420016 - MLT2B4 LTR ERVL -4 552 1 2 940 204 299 0 29 chr9 46657590 46657659 -77418513 - L3 LINE CR1 -119 4370 4304 2 940 206 286 16 16 chr9 46657829 46657893 -77418279 + L2c LINE L2 3272 3335 -52 2 940 1070 241 29 26 chr9 46658037 46658310 -77417862 + B4A SINE B4 1 274 -18 2 940 528 0 42 0 chr9 46658323 46658395 -77417777 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 940 222 291 62 12 chr9 46658632 46658712 -77417460 - MIRm SINE MIR -101 175 92 2 940 365 102 17 0 chr9 46658796 46658855 -77417317 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 940 188 289 19 0 chr9 46659228 46659280 -77416892 - L2b LINE L2 -7 3368 3316 2 940 473 354 61 11 chr9 46660741 46661018 -77415154 + LTR16C LTR ERVL 122 412 -77 2 941 196 228 71 60 chr9 46661676 46661760 -77414412 - L4 LINE RTE -1707 322 238 2 941 1296 186 5 0 chr9 46661906 46662121 -77414051 + B3 SINE B2 1 216 0 2 941 326 394 26 31 chr9 46662143 46662337 -77413835 + LTR16A LTR ERVL 259 451 0 2 941 372 103 0 0 chr9 46662493 46662551 -77413621 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 941 190 346 58 29 chr9 46663241 46663378 -77412794 + L2c LINE L2 3032 3172 -215 2 941 234 0 0 0 chr9 46663476 46663502 -77412670 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 941 27 49 0 0 chr9 46664533 46664574 -77411598 + AT_rich Low_complexity Low_complexity 1 41 0 2 941 652 273 0 18 chr9 46664588 46664752 -77411420 - RSINE1 SINE B4 -2 163 3 2 941 304 312 102 72 chr9 46664810 46664976 -77411196 - MIR3 SINE MIR -25 183 13 2 941 1213 218 0 0 chr9 46666014 46666225 -77409947 - B3 SINE B2 -5 211 1 2 941 1011 133 353 36 chr9 46667100 46667349 -77408823 - ORR1A4 LTR MaLR -1 328 1 2 941 537 16 0 0 chr9 46667497 46667559 -77408613 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 941 4408 149 23 4 chr9 46667575 46667946 -77408226 - RMER6D LTR ERVK 0 720 339 2 941 225 65 0 0 chr9 46667946 46667977 -77408195 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 941 4408 149 23 4 chr9 46667977 46668312 -77407860 - RMER6D LTR ERVK -382 338 2 2 941 518 280 103 69 chr9 46668364 46668625 -77407547 - B4 SINE B4 -22 270 1 2 941 272 167 0 0 chr9 46669203 46669251 -77406921 - L2a LINE L2 -3 3423 3376 2 941 260 279 0 0 chr9 46669251 46669264 -77406908 - MIRm SINE MIR -1 275 215 2 941 399 98 0 0 chr9 46669688 46669749 -77406423 + (TAA)n Simple_repeat Simple_repeat 1 61 0 2 941 856 262 81 22 chr9 46671153 46671426 -77404746 - B4 SINE B4 0 292 4 2 941 263 303 50 56 chr9 46671852 46672013 -77404159 - MamRep564 Unknown Unknown -117 240 81 2 941 623 108 0 10 chr9 46672347 46672450 -77403722 + (TTCC)n Simple_repeat Simple_repeat 2 103 0 2 941 375 23 0 0 chr9 46672479 46672523 -77403649 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 941 595 318 45 53 chr9 46673932 46674288 -77401884 - ORR1E LTR MaLR -6 353 1 2 941 194 350 32 16 chr9 46674724 46674849 -77401323 - L2a LINE L2 -1 3425 3299 2 941 7856 77 7 1 chr9 46674962 46676696 -77399476 + L1_Mus1 LINE L1 4825 6567 0 2 941 243 246 0 0 chr9 46676923 46676980 -77399192 - MLT2B4 LTR ERVL -499 57 1 2 941 367 263 169 0 chr9 46678137 46678365 -77397807 + MLT2B4 LTR ERVL 3 277 -238 2 941 1525 252 19 3 chr9 46678450 46678812 -77397360 + MTE2b LTR MaLR 1 368 -11 2 941 2711 262 52 28 chr9 46679246 46680169 -77396003 - L1ME1 LINE L1 -14 6165 5221 2 941 487 318 21 86 chr9 46680169 46680355 -77395817 + B4A SINE B4 2 175 -117 2 941 215 264 13 89 chr9 46680407 46680486 -77395686 + RSINE1 SINE B4 93 165 0 2 941 355 258 70 8 chr9 46680536 46680685 -77395487 - L1ME1 LINE L1 -918 5228 5065 2 941 289 330 0 29 chr9 46681116 46681219 -77394953 + MLT1A1 LTR MaLR 24 123 -285 2 941 260 300 101 109 chr9 46681271 46681518 -77394654 + MTEb LTR MaLR 104 365 -14 2 941 526 305 181 28 chr9 46681959 46682221 -77393951 - L1ME1 LINE L1 -1528 4618 4295 2 941 569 72 12 0 chr9 46682221 46682304 -77393868 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 941 694 305 170 28 chr9 46682304 46683017 -77393155 - L1ME1 LINE L1 -1852 4294 3507 2 941 347 314 5 0 chr9 46683034 46683150 -77393022 - PB1D10 SINE Alu -30 119 1 2 941 534 266 133 53 chr9 46683178 46683999 -77392173 - L1MC LINE L1 -2662 3484 2590 2 941 513 318 44 35 chr9 46684766 46684994 -77391178 - L1MB8 LINE L1 -48 6130 5901 2 941 2073 282 58 52 chr9 46685063 46685391 -77390781 - L1MD1 LINE L1 -32 6601 6276 2 941 201 74 0 0 chr9 46685391 46685418 -77390754 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 941 2073 277 62 46 chr9 46685418 46686215 -77389957 - L1MD1 LINE L1 -358 6275 5462 2 941 524 229 67 22 chr9 46686233 46686367 -77389805 - B1F SINE Alu -1 148 9 2 941 1789 235 94 24 chr9 46686397 46687016 -77389156 - L1MD1 LINE L1 -1115 5422 4761 2 941 362 270 39 94 chr9 46687041 46687168 -77389004 + B1F2 SINE Alu 30 149 0 3 941 677 262 62 4 chr9 46687187 46687413 -77388759 - L1MD1 LINE L1 -1764 4773 4535 2 941 226 269 38 25 chr9 46687433 46687513 -77388659 + L1MD LINE L1 2491 2571 -3575 3 941 983 311 131 37 chr9 46687538 46688464 -77387708 + L1MD LINE L1 3296 4308 -1838 3 941 3188 101 6 47 chr9 46688501 46688988 -77387184 - L1_Mus3 LINE L1 0 6638 6172 3 941 881 74 0 0 chr9 46688988 46689096 -77387076 - L1_Mm LINE L1 -229 5654 5547 3 941 6578 96 43 5 chr9 46689088 46690572 -77385600 - L1VL1 LINE L1 -1746 1952 401 3 941 307 218 15 0 chr9 46690632 46690697 -77385475 - B1_Mur2 SINE Alu -8 141 78 3 941 324 238 207 22 chr9 46690784 46691069 -77385103 - L1MD1 LINE L1 -3675 2862 2522 2 941 336 173 0 67 chr9 46691189 46691338 -77384834 + (TATG)n Simple_repeat Simple_repeat 1 139 0 3 941 256 181 78 16 chr9 46691372 46691501 -77384671 + (TATATG)n Simple_repeat Simple_repeat 1 137 0 3 941 784 227 6 47 chr9 46691525 46691696 -77384476 - RSINE1 SINE B4 0 165 2 3 941 26 0 0 0 chr9 46691764 46691790 -77384382 + AT_rich Low_complexity Low_complexity 1 26 0 3 941 300 133 0 0 chr9 46691923 46691983 -77384189 + (TTTC)n Simple_repeat Simple_repeat 4 63 0 3 941 959 50 0 80 chr9 46691984 46692135 -77384037 - B1_Mus2 SINE Alu 0 147 9 3 941 1098 280 149 39 chr9 46692147 46692865 -77383307 - L1MD1 LINE L1 -4418 2215 1419 2 941 704 241 105 0 chr9 46692913 46693104 -77383068 - B3 SINE B2 -5 211 1 3 941 692 284 52 9 chr9 46693205 46693415 -77382757 - ID_B1 SINE B4 -3 221 3 3 941 351 0 0 0 chr9 46693435 46693474 -77382698 + (TTA)n Simple_repeat Simple_repeat 3 41 0 3 941 762 293 296 42 chr9 46693570 46693869 -77382303 - L1MEc LINE L1 -4492 1908 1545 3 941 1274 263 71 3 chr9 46693869 46694223 -77381949 - MTE2b LTR MaLR -1 378 1 3 941 762 282 162 52 chr9 46694223 46694910 -77381262 - L1MEc LINE L1 -4856 1544 770 3 941 180 345 35 12 chr9 46695037 46695122 -77381050 - L2c LINE L2 -208 3179 3093 3 941 223 274 54 14 chr9 46697237 46697311 -77378861 + L2c LINE L2 3092 3168 -219 3 941 986 143 139 30 chr9 46697793 46697995 -77378177 - URR1A DNA MER1_type 0 226 3 3 941 2007 168 69 30 chr9 46698418 46698823 -77377349 + MTC LTR MaLR 1 421 0 3 941 229 260 161 16 chr9 46699854 46699981 -77376191 - MIRm SINE MIR -120 156 2 3 941 286 277 36 0 chr9 46700491 46700574 -77375598 - MLT1K LTR MaLR -92 503 418 3 941 180 247 23 12 chr9 46700923 46701009 -77375163 + GA-rich Low_complexity Low_complexity 1 87 0 3 941 350 329 132 26 chr9 46701403 46701631 -77374541 - LTR33B LTR ERVL -8 495 244 3 941 290 342 90 57 chr9 46701816 46702027 -77374145 - MLT1K LTR MaLR -343 252 35 3 941 396 288 38 32 chr9 46702317 46702475 -77373697 - RLTR14 LTR ERV1 0 382 224 3 941 522 281 119 61 chr9 46702885 46703230 -77372942 - MTEa LTR MaLR -13 366 2 3 941 422 301 89 34 chr9 46703397 46703576 -77372596 - ORR1E LTR MaLR -163 196 8 3 941 834 229 97 4 chr9 46703575 46703812 -77372360 - MER2 DNA MER2_type -70 275 17 3 941 204 239 179 0 chr9 46705438 46705505 -77370667 + MIRb SINE MIR 46 124 -144 3 941 1026 261 24 31 chr9 46705626 46705918 -77370254 + B4 SINE B4 3 292 0 3 941 342 286 129 48 chr9 46706350 46706559 -77369613 - MIRb SINE MIR -1 267 42 3 941 477 34 0 0 chr9 46706864 46706923 -77369249 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 941 252 77 0 55 chr9 46707291 46707346 -77368826 + (TGGGGG)n Simple_repeat Simple_repeat 6 57 0 3 941 267 103 0 0 chr9 46707676 46707715 -77368457 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 3 941 1101 243 107 61 chr9 46708539 46708662 -77367510 - Lx8 LINE L1 -2 7471 7355 3 941 252 0 0 0 chr9 46708662 46708690 -77367482 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 941 1101 243 107 61 chr9 46708690 46708912 -77367260 - Lx8 LINE L1 -119 7354 7111 3 941 181 238 143 62 chr9 46709107 46709219 -77366953 + MER5A DNA MER1_type 1 121 -68 3 941 414 0 0 0 chr9 46712228 46712274 -77363898 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 941 261 311 139 46 chr9 46713547 46714006 -77362166 + MLT1F LTR MaLR 79 545 -24 3 941 1139 276 234 27 chr9 46714128 46714790 -77361382 - L1MB3 LINE L1 -3 6168 5339 3 941 218 152 17 0 chr9 46715672 46715731 -77360441 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 941 539 192 6 0 chr9 46715744 46715921 -77360251 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 941 851 166 35 0 chr9 46716172 46716371 -77359801 - MER33 DNA MER1_type -27 297 92 3 941 239 286 59 51 chr9 46716836 46716954 -77359218 + ORR1E LTR MaLR 201 319 -40 3 941 203 280 21 70 chr9 46717488 46717630 -77358542 + GA-rich Low_complexity Low_complexity 4 138 0 3 941 638 264 6 0 chr9 46719401 46719560 -77356612 + B3A SINE B2 2 161 -37 3 941 189 0 0 0 chr9 46719564 46719585 -77356587 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 941 312 27 0 0 chr9 46719585 46719621 -77356551 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 941 758 251 38 19 chr9 46719722 46719933 -77356239 - B3 SINE B2 0 216 2 3 941 241 278 21 53 chr9 46720214 46720309 -77355863 + L1ME2 LINE L1 5911 6002 -162 3 941 684 152 128 8 chr9 46720348 46720481 -77355691 - B1_Mur3 SINE Alu 0 149 1 3 941 252 182 12 38 chr9 46720819 46720899 -77355273 + G-rich Low_complexity Low_complexity 5 82 0 3 941 476 134 10 0 chr9 46720912 46721009 -77355163 + (GA)n Simple_repeat Simple_repeat 2 99 0 3 941 236 53 26 0 chr9 46721974 46722012 -77354160 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 3 941 339 25 0 0 chr9 46722982 46723022 -77353150 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 941 468 0 0 0 chr9 46723022 46723073 -77353099 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 941 185 83 28 0 chr9 46723163 46723199 -77352973 + (TGGGGG)n Simple_repeat Simple_repeat 2 38 0 3 941 218 313 99 33 chr9 46724859 46725011 -77351161 + MIRb SINE MIR 39 200 -68 3 941 324 283 65 45 chr9 46725205 46725370 -77350802 - ORR1E LTR MaLR -186 188 43 3 941 195 42 0 0 chr9 46725520 46725544 -77350628 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 3 941 312 27 0 0 chr9 46725724 46725761 -77350411 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 941 314 265 138 33 chr9 46727190 46727283 -77348889 + MTD LTR MaLR 7 110 -309 3 941 252 0 0 0 chr9 46727283 46727311 -77348861 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 941 314 265 138 33 chr9 46727311 46727369 -77348803 + MTD LTR MaLR 111 174 -245 3 941 446 297 48 48 chr9 46727363 46727508 -77348664 + MT2A LTR ERVL 179 323 -210 3 941 451 344 84 14 chr9 46727668 46727883 -77348289 + MIRb SINE MIR 18 247 -21 3 941 716 211 192 0 chr9 46728219 46728237 -77347935 - B3A SINE B2 -6 192 175 3 941 567 43 0 0 chr9 46728237 46728307 -77347865 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 941 716 211 192 0 chr9 46728307 46728449 -77347723 - B3A SINE B2 -24 174 2 3 941 794 254 166 32 chr9 46728451 46728764 -77347408 + ORR1E LTR MaLR 1 355 -4 3 941 441 297 130 32 chr9 46728775 46728857 -77347315 + MLT1A LTR MaLR 82 162 -212 3 941 861 120 0 0 chr9 46728857 46728990 -77347182 + (GGA)n Simple_repeat Simple_repeat 3 135 0 3 941 441 297 130 32 chr9 46728990 46729123 -77347049 + MLT1A LTR MaLR 163 317 -57 3 941 539 328 152 24 chr9 46729176 46729934 -77346238 + L1MC4 LINE L1 7081 7935 -107 3 941 662 279 58 0 chr9 46730873 46731045 -77345127 - B3A SINE B2 0 198 17 3 941 396 0 0 0 chr9 46731070 46731114 -77345058 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 941 460 277 80 9 chr9 46731120 46731233 -77344939 + ID_B1 SINE B4 96 216 -8 3 941 372 43 0 0 chr9 46731258 46731304 -77344868 + (CATA)n Simple_repeat Simple_repeat 4 49 0 3 941 334 322 164 16 chr9 46731678 46731861 -77344311 - MIR SINE MIR -1 261 52 3 941 250 306 111 93 chr9 46731877 46732039 -77344133 + Charlie1a DNA MER1_type 1 165 -1290 3 941 284 220 181 32 chr9 46732128 46732222 -77343950 + B4 SINE B4 5 112 -180 3 941 321 243 50 75 chr9 46732356 46732476 -77343696 + RMER12 LTR ERVK 746 862 -460 3 941 1255 304 56 3 chr9 46732517 46732893 -77343279 + Charlie1a DNA MER1_type 270 665 -790 3 941 387 274 54 39 chr9 46732899 46733162 -77343010 - LTR41 LTR ERVL 0 768 464 3 941 227 83 0 77 chr9 46733639 46733691 -77342481 + CT-rich Low_complexity Low_complexity 1 48 0 3 941 2194 207 14 17 chr9 46733962 46734380 -77341792 - MTD LTR MaLR 0 419 3 3 941 1327 269 117 11 chr9 46734710 46735172 -77341000 + Charlie1a DNA MER1_type 685 1195 -260 3 941 416 258 63 77 chr9 46735180 46735323 -77340849 + ID_B1 SINE B4 84 224 0 3 941 769 223 107 44 chr9 46735300 46735572 -77340600 + Charlie1a DNA MER1_type 1148 1436 -19 3 941 375 41 0 0 chr9 46735871 46735920 -77340252 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 941 990 230 0 44 chr9 46735969 46736174 -77339998 - B4 SINE B4 -96 196 1 3 941 266 300 11 32 chr9 46736644 46736737 -77339435 + LTR89 LTR ERVL? 707 797 -82 3 941 195 259 0 0 chr9 46737072 46737130 -77339042 + A-rich Low_complexity Low_complexity 1 58 0 3 941 357 82 0 0 chr9 46737533 46737582 -77338590 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 941 1292 269 11 0 chr9 46738273 46738537 -77337635 + B4 SINE B4 26 292 0 3 941 1159 273 102 18 chr9 46739369 46739701 -77336471 - MTE2a LTR MaLR 0 379 20 3 941 420 302 121 42 chr9 46739978 46740310 -77335862 - ORR1E LTR MaLR 0 359 2 3 941 492 224 159 8 chr9 46740635 46740761 -77335411 + RSINE1 SINE B4 3 147 -18 3 941 497 44 15 0 chr9 46740777 46740845 -77335327 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 941 180 401 36 7 chr9 46741115 46741253 -77334919 + L2 LINE L2 2690 2831 -588 3 941 498 33 0 0 chr9 46743351 46743411 -77332761 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 3 941 433 345 112 63 chr9 46743413 46743744 -77332428 + LTR16A1 LTR ERVL 3 349 -107 3 941 915 265 73 52 chr9 46744057 46744404 -77331768 - MLT1B LTR MaLR -35 432 1 3 941 372 323 94 17 chr9 46744937 46745170 -77331002 + HERV16-int LTR ERVL 881 1131 -3865 3 941 181 231 135 0 chr9 46745265 46745317 -77330855 - L2 LINE L2 -1176 2243 2185 3 941 351 336 45 71 chr9 46745583 46745852 -77330320 + HERV16-int LTR ERVL 1715 1976 -3020 3 941 967 248 68 116 chr9 46745876 46746355 -77329817 + MT2A LTR ERVL 1 590 -11 3 941 290 162 2 0 chr9 46746547 46746609 -77329563 + MT2A LTR ERVL 488 565 -2 4 941 805 335 90 66 chr9 46746683 46747344 -77328828 + HERV16-int LTR ERVL 2203 2865 -2896 3 941 225 305 17 0 chr9 46747968 46748027 -77328145 + LTR16A1 LTR ERVL 384 443 -13 4 941 1231 244 93 15 chr9 46748076 46748400 -77327772 - ORR1E LTR MaLR -10 349 1 4 941 247 269 60 0 chr9 46748882 46748949 -77327223 + MamRep434 DNA TcMar 354 424 -2 4 941 235 289 48 95 chr9 46749080 46749206 -77326966 - MLT2B5 LTR ERVL -166 389 270 4 941 238 250 151 11 chr9 46749281 46749405 -77326767 + MIRb SINE MIR 12 167 -101 4 941 767 133 18 6 chr9 46749718 46749884 -77326288 + (CA)n Simple_repeat Simple_repeat 2 169 0 4 941 591 291 18 18 chr9 46750399 46750567 -77325605 + B4A SINE B4 107 274 -18 4 941 203 330 37 74 chr9 46751123 46751231 -77324941 - L2b LINE L2 0 3375 3272 4 941 2257 158 51 27 chr9 46753971 46754382 -77321790 - MTC LTR MaLR 0 421 1 4 941 621 149 0 0 chr9 46754550 46754664 -77321508 + (TA)n Simple_repeat Simple_repeat 2 115 0 4 941 234 280 103 78 chr9 46755247 46755363 -77320809 + L2c LINE L2 3256 3374 -13 4 941 545 307 44 62 chr9 46756160 46756411 -77319761 - MER63A DNA AcHobo -11 425 32 4 941 231 371 49 106 chr9 46756792 46757018 -77319154 - MLT1M LTR MaLR -104 568 356 4 941 210 71 0 0 chr9 46758067 46758095 -77318077 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 4 941 337 354 132 56 chr9 46758222 46758578 -77317594 - L2a LINE L2 -92 3334 2952 4 941 816 310 38 31 chr9 46758624 46758914 -77317258 + B4 SINE B4 1 292 0 4 941 426 20 0 0 chr9 46758959 46759010 -77317162 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 941 286 274 31 21 chr9 46759108 46759205 -77316967 + L1M4 LINE L1 5714 5811 -363 4 941 1654 229 16 16 chr9 46759226 46759599 -77316573 - MTEb LTR MaLR -2 377 5 4 941 267 245 31 41 chr9 46759702 46759800 -77316372 + CT-rich Low_complexity Low_complexity 3 99 0 4 941 282 326 146 23 chr9 46760841 46761142 -77315030 - L1MD2 LINE L1 -51 6128 5791 4 941 254 366 124 47 chr9 46761194 46761532 -77314640 + L2c LINE L2 3024 3387 0 4 941 1669 211 48 0 chr9 46761549 46761881 -77314291 + ORR1D1 LTR MaLR 1 348 -26 4 941 1265 378 52 24 chr9 46762174 46762757 -77313415 - L4 LINE RTE -211 1818 1220 4 941 231 36 0 0 chr9 46763177 46763205 -77312967 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 941 396 0 0 0 chr9 46763790 46763834 -77312338 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 941 230 202 168 63 chr9 46764255 46764350 -77311822 - MER77 LTR ERVL -84 523 419 4 941 1791 189 53 11 chr9 46764993 46765352 -77310820 + ORR1D1 LTR MaLR 1 374 0 4 941 288 259 15 7 chr9 46765368 46765504 -77310668 + GA-rich Low_complexity Low_complexity 3 139 0 4 941 3874 159 32 142 chr9 46767491 46768410 -77307762 + RLTR40 LTR ERVK 1 817 0 4 941 1247 125 11 5 chr9 46768698 46768883 -77307289 + B2_Mm2 SINE B2 4 189 -6 4 941 350 276 7 89 chr9 46768897 46769032 -77307140 + RMER15 LTR ERVL 371 494 -81 4 941 302 328 47 0 chr9 46769732 46769860 -77306312 + L2c LINE L2 3254 3387 0 4 941 344 330 17 17 chr9 46769894 46770011 -77306161 + L1M5 LINE L1 5616 5732 -392 4 941 296 231 190 56 chr9 46771301 46771480 -77304692 + MLT1B LTR MaLR 2 204 -186 4 941 268 372 14 78 chr9 46772024 46772185 -77303987 - MIRb SINE MIR -112 156 3 4 941 399 21 0 0 chr9 46772677 46772725 -77303447 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 941 257 0 30 0 chr9 46772726 46772759 -77303413 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 941 233 169 17 0 chr9 46772785 46772844 -77303328 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 941 621 189 0 0 chr9 46772872 46773041 -77303131 + (TG)n Simple_repeat Simple_repeat 1 169 0 4 941 328 256 0 22 chr9 46773089 46773273 -77302899 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 941 686 180 0 8 chr9 46773285 46773554 -77302618 + (TG)n Simple_repeat Simple_repeat 1 266 0 4 941 1884 169 35 32 chr9 46775205 46775578 -77300594 - ORR1D1 LTR MaLR 0 374 1 4 941 263 247 74 21 chr9 46775685 46775780 -77300392 + MIR3 SINE MIR 104 203 -5 4 941 249 287 105 47 chr9 46776307 46776479 -77299693 + MLT1C LTR MaLR 172 353 -114 4 941 296 365 50 25 chr9 46776713 46776873 -77299299 - L3b LINE CR1 -131 351 188 4 941 293 305 11 0 chr9 46777415 46777510 -77298662 + CT-rich Low_complexity Low_complexity 1 96 0 4 941 1119 271 42 6 chr9 46778635 46778947 -77297225 + MER2 DNA MER2_type 1 323 -22 4 941 1316 164 4 9 chr9 46779239 46779466 -77296706 - URR1A DNA MER1_type 0 226 1 4 941 264 154 0 0 chr9 46780465 46780517 -77295655 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 4 941 553 275 8 0 chr9 46780550 46780681 -77295491 - RSINE1 SINE B4 -25 140 9 4 941 1302 129 76 0 chr9 46780705 46780915 -77295257 - URR1A DNA MER1_type 0 226 1 4 941 277 291 13 47 chr9 46781428 46781632 -77294540 + L1M5 LINE L1 4487 4677 -1469 4 941 349 170 106 96 chr9 46781686 46781790 -77294382 - PB1D7 SINE Alu -7 113 9 4 941 432 0 0 0 chr9 46781809 46781857 -77294315 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 941 325 179 55 31 chr9 46781858 46781985 -77294187 + (TA)n Simple_repeat Simple_repeat 2 131 0 4 941 426 316 93 45 chr9 46782102 46782325 -77293847 + L1M5 LINE L1 4864 5117 -1029 4 941 759 280 13 44 chr9 46782325 46782553 -77293619 + MER58A DNA MER1_type 4 224 0 4 941 426 316 93 45 chr9 46782553 46782823 -77293349 + L1M5 LINE L1 5118 5381 -765 4 941 840 216 21 21 chr9 46782938 46783127 -77293045 - B3 SINE B2 -27 189 1 4 941 225 292 0 0 chr9 46783468 46783588 -77292584 + (CA)n Simple_repeat Simple_repeat 1 120 0 4 941 311 257 16 128 chr9 46783721 46783846 -77292326 + PB1D10 SINE Alu 7 117 0 4 941 268 295 60 37 chr9 46785203 46785337 -77290835 - L3 LINE CR1 -362 4127 3991 4 941 311 192 0 76 chr9 46785724 46785803 -77290369 - MIR3 SINE MIR -7 201 129 4 941 193 245 20 0 chr9 46785799 46785848 -77290324 + L4 LINE RTE 1980 2029 0 4 941 520 236 0 16 chr9 46787727 46787852 -77288320 + ID_B1 SINE B4 100 222 -2 4 941 246 128 0 0 chr9 46788927 46788966 -77287206 + (A)n Simple_repeat Simple_repeat 1 39 0 4 941 25 0 0 0 chr9 46791764 46791789 -77284383 + AT_rich Low_complexity Low_complexity 1 25 0 4 941 990 222 213 10 chr9 46792360 46792674 -77283498 - MTEb LTR MaLR -1 378 1 4 942 353 313 72 18 chr9 46793020 46793186 -77282986 - MIR SINE MIR -41 221 47 4 942 587 212 0 9 chr9 46793320 46793539 -77282633 + (TTG)n Simple_repeat Simple_repeat 1 217 0 4 942 712 317 98 16 chr9 46794985 46795302 -77280870 - MER2 DNA MER2_type -2 343 1 4 942 357 24 0 0 chr9 46796672 46796714 -77279458 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 942 889 190 67 6 chr9 46796777 46796957 -77279215 + ORR1E LTR MaLR 1 191 -168 4 942 990 158 6 0 chr9 46797195 46797372 -77278800 + URR1A DNA MER1_type 49 226 0 4 942 296 247 0 13 chr9 46797419 46797497 -77278675 - B4 SINE B4 -208 84 8 4 942 527 268 66 12 chr9 46797491 46797657 -77278515 + ORR1E LTR MaLR 203 377 -2 4 942 488 253 127 38 chr9 46797657 46797949 -77278223 - MLT1A0 LTR MaLR -43 322 4 4 942 213 39 0 0 chr9 46798931 46798957 -77277215 + (A)n Simple_repeat Simple_repeat 1 26 0 4 942 2580 83 16 6 chr9 46799703 46800066 -77276106 - Lx3_Mus LINE L1 0 7009 6643 4 942 1438 46 0 0 chr9 46800066 46800239 -77275933 - Lx3_Mus LINE L1 -484 6525 6353 4 942 939 70 0 0 chr9 46800235 46800350 -77275822 + Lx3_Mus LINE L1 6256 6370 -639 4 942 295 235 185 33 chr9 46800496 46800707 -77275465 + MER33 DNA MER1_type 15 257 -67 4 942 229 213 0 32 chr9 46801372 46801435 -77274737 - Lx8 LINE L1 0 7473 7413 4 942 594 277 149 33 chr9 46801436 46801738 -77274434 - Lx8 LINE L1 -1091 6382 6046 4 942 233 293 89 51 chr9 46803945 46804103 -77272069 + MIRc SINE MIR 45 208 -60 4 942 218 116 23 0 chr9 46805313 46805356 -77270816 + (TCC)n Simple_repeat Simple_repeat 3 46 0 4 942 604 159 9 27 chr9 46805362 46805472 -77270700 - B1_Mur4 SINE Alu 0 150 43 4 942 6963 58 28 20 chr9 46807256 46808206 -77267966 + Lx3_Mus LINE L1 6052 7009 0 4 942 248 209 0 0 chr9 46808428 46808471 -77267701 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 942 867 202 104 72 chr9 46808472 46808750 -77267422 - B4A SINE B4 -2 290 4 4 942 257 242 15 29 chr9 46809119 46809187 -77266985 + (TATG)n Simple_repeat Simple_repeat 2 68 0 4 942 1299 196 134 9 chr9 46809354 46809511 -77266661 + ORR1D2 LTR MaLR 1 165 -205 4 942 1100 29 7 0 chr9 46809511 46809647 -77266525 + (TC)n Simple_repeat Simple_repeat 2 138 0 4 942 1299 196 134 9 chr9 46809647 46809818 -77266354 + ORR1D2 LTR MaLR 166 369 -1 4 942 258 286 0 0 chr9 46810441 46810539 -77265633 + (TATG)n Simple_repeat Simple_repeat 1 98 0 4 942 668 216 6 0 chr9 46810543 46810595 -77265577 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 942 3642 8 2 0 chr9 46810595 46810990 -77265182 + MTA_Mm LTR MaLR 1 396 0 4 942 668 235 3 0 chr9 46810990 46811206 -77264966 + (TG)n Simple_repeat Simple_repeat 1 216 0 4 942 360 303 116 26 chr9 46811687 46811877 -77264295 - L2c LINE L2 0 3387 3181 4 942 288 0 0 0 chr9 46812607 46812639 -77263533 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 4 942 523 215 30 8 chr9 46812641 46812772 -77263400 - Lx5 LINE L1 -11 7039 6906 4 942 367 239 11 11 chr9 46813223 46813316 -77262856 + RMER15 LTR ERVL 432 524 -51 4 942 291 378 47 44 chr9 46814482 46814842 -77261330 + L1MEd LINE L1 426 786 -5333 4 942 259 183 60 12 chr9 46815407 46815490 -77260682 + L1MEd LINE L1 1284 1370 -4855 4 942 2001 176 26 31 chr9 46816028 46816449 -77259723 - MTD LTR MaLR 0 419 1 4 942 278 318 86 25 chr9 46816937 46817182 -77258990 + L1MEc LINE L1 163 422 -5978 4 942 265 275 36 27 chr9 46817601 46817713 -77258459 + L1MEc LINE L1 1796 1908 -4492 4 942 1036 98 12 6 chr9 46817738 46817902 -77258270 + (GAAA)n Simple_repeat Simple_repeat 2 166 0 4 942 820 303 5 0 chr9 46818036 46818257 -77257915 + ID_B1 SINE B4 2 223 -1 4 942 1068 258 31 22 chr9 46818578 46818899 -77257273 + Lx8 LINE L1 6402 6725 -748 4 942 4451 190 39 5 chr9 46818933 46819780 -77256392 - Lx5 LINE L1 -1 7049 6174 5 942 1266 299 60 101 chr9 46819780 46819958 -77256214 + Lx8 LINE L1 6844 7027 -446 4 942 248 176 20 0 chr9 46819958 46820009 -77256163 + RLTR25B LTR ERVK 977 1028 0 5 942 1266 299 60 101 chr9 46820009 46820435 -77255737 + Lx8 LINE L1 7028 7471 -2 4 942 881 307 111 31 chr9 46820444 46821334 -77254838 + L1MEc LINE L1 2662 3619 -2700 4 942 483 196 168 178 chr9 46821377 46821552 -77254620 + MTD LTR MaLR 1 173 -206 5 942 183 100 0 0 chr9 46821556 46821586 -77254586 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 5 942 681 204 0 17 chr9 46821598 46821773 -77254399 + CT-rich Low_complexity Low_complexity 3 174 0 5 942 465 245 55 20 chr9 46821784 46821930 -77254242 + MTD LTR MaLR 229 379 0 5 942 231 287 11 54 chr9 46822106 46822198 -77253974 + L1MEc LINE L1 3670 3757 -2562 4 942 704 226 0 0 chr9 46822274 46822407 -77253765 + B1_Mur1 SINE Alu 6 138 -11 5 942 639 323 103 8 chr9 46822700 46822962 -77253210 + B4 SINE B4 2 288 -4 5 942 409 259 147 15 chr9 46823091 46823295 -77252877 + MLT1F LTR MaLR 318 548 0 5 942 23 0 0 0 chr9 46823516 46823539 -77252633 + AT_rich Low_complexity Low_complexity 1 23 0 5 942 973 243 98 15 chr9 46823864 46824172 -77252000 - L1M2 LINE L1 -374 6507 6177 5 942 720 75 0 70 chr9 46824178 46824335 -77251837 + (TCTG)n Simple_repeat Simple_repeat 1 146 0 5 942 764 250 78 54 chr9 46824383 46824641 -77251531 - B4 SINE B4 -6 286 23 5 942 354 329 102 7 chr9 46824929 46825076 -77251096 - Lx8 LINE L1 -294 7179 7019 5 942 600 316 70 18 chr9 46825077 46825477 -77250695 - L1_Mur3 LINE L1 -430 5450 5005 5 942 234 268 0 35 chr9 46825488 46825546 -77250626 + C-rich Low_complexity Low_complexity 3 58 0 5 942 670 316 46 35 chr9 46825575 46825766 -77250406 - B4A SINE B4 -4 288 97 5 942 3207 109 256 94 chr9 46825766 46826544 -77249628 + RMER17A2 LTR ERVK 1 904 -2 5 942 670 316 46 35 chr9 46826544 46826637 -77249535 - B4A SINE B4 -196 96 1 5 942 682 257 110 40 chr9 46826676 46826903 -77249269 - L1M2 LINE L1 -1136 5709 5467 5 942 384 316 154 0 chr9 46826963 46827080 -77249092 - RSINE1 SINE B4 -29 136 2 5 942 767 298 132 35 chr9 46827084 46827184 -77248988 - L1M2 LINE L1 -1376 5469 5355 5 942 705 56 0 0 chr9 46827184 46827274 -77248898 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 942 555 16 0 0 chr9 46827274 46827337 -77248835 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 942 767 294 136 34 chr9 46827337 46827932 -77248240 - L1M2 LINE L1 -1488 5357 4710 5 942 442 322 33 109 chr9 46828000 46828303 -77247869 - B4A SINE B4 0 292 13 5 942 1977 291 106 65 chr9 46828314 46829233 -77246939 - L1M2 LINE L1 -2135 4710 3741 5 942 701 211 13 20 chr9 46829233 46829383 -77246789 - B1_Mur2 SINE Alu 0 149 1 5 942 1977 291 127 60 chr9 46829383 46830820 -77245352 - L1M2 LINE L1 -3105 3740 2205 5 942 288 0 0 0 chr9 46830820 46830852 -77245320 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 942 376 289 153 53 chr9 46830852 46830906 -77245266 - L1M2 LINE L1 -4645 2204 2158 5 942 563 291 52 36 chr9 46831974 46832280 -77243892 + L1M4 LINE L1 4891 5201 -945 5 942 277 362 18 30 chr9 46832416 46832584 -77243588 + L1M4 LINE L1 5429 5594 -585 5 942 930 298 113 45 chr9 46832602 46833575 -77242597 + L1M3a LINE L1 802 1748 -4565 5 942 233 289 23 70 chr9 46833575 46833673 -77242499 - ID4_ SINE ID -59 93 1 5 942 241 271 71 0 chr9 46833745 46833830 -77242342 + L1M3a LINE L1 1600 1690 -4694 5 942 749 272 56 36 chr9 46833830 46834415 -77241757 + L1M3a LINE L1 5206 5808 -719 5 942 1189 230 42 18 chr9 46834423 46834706 -77241466 - MTE2a LTR MaLR -89 290 1 5 942 896 37 58 22 chr9 46835034 46835171 -77241001 + L1Md_F3 LINE L1 6443 6584 0 5 942 4289 133 51 13 chr9 46835251 46835935 -77240237 + Lx2 LINE L1 6288 6997 0 5 942 555 273 34 62 chr9 46836030 46836206 -77239966 - B3A SINE B2 -16 182 12 5 942 338 247 91 23 chr9 46836354 46836504 -77239668 - L1M3 LINE L1 -844 5447 5289 5 942 917 234 70 111 chr9 46836581 46837067 -77239105 + L1M3 LINE L1 2450 2915 -3225 5 942 24 0 0 0 chr9 46837132 46837156 -77239016 + AT_rich Low_complexity Low_complexity 1 24 0 5 942 602 181 35 0 chr9 46837190 46837306 -77238866 + RLTR40 LTR ERVK 1 120 -697 5 942 248 247 125 90 chr9 46837309 46837509 -77238663 + L1M3 LINE L1 2459 2665 -3475 5 942 1871 210 28 50 chr9 46837509 46838126 -77238046 + RLTR40 LTR ERVK 118 810 -7 5 942 2336 265 196 3 chr9 46838133 46838902 -77237270 + Lx8 LINE L1 6224 7141 -332 5 942 441 0 0 0 chr9 46839006 46839055 -77237117 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 942 236 180 20 0 chr9 46839065 46839115 -77237057 + Lx8 LINE L1 7421 7471 -2 5 942 1745 281 110 54 chr9 46839127 46840271 -77235901 + L1M3 LINE L1 2888 4095 -2045 5 942 426 313 104 0 chr9 46840466 46840660 -77235512 - L1_Mur3 LINE L1 -1265 4621 4402 5 942 2994 81 2 0 chr9 46840659 46841053 -77235119 - Lx2B LINE L1 -1019 5981 5587 5 942 6320 137 25 13 chr9 46841073 46842079 -77234093 + Lx2B LINE L1 5982 6999 -1 5 942 320 250 12 59 chr9 46842144 46842229 -77233943 - L1M3 LINE L1 -1757 4386 4288 5 942 2464 252 69 15 chr9 46842319 46843192 -77232980 - L1_Mur3 LINE L1 -1622 4258 3339 5 942 733 281 17 4 chr9 46843179 46843439 -77232733 - L1M3 LINE L1 -3293 2847 2585 5 942 631 254 27 107 chr9 46843454 46843679 -77232493 + ORR1E LTR MaLR 3 209 -150 5 942 524 143 9 0 chr9 46843692 46843804 -77232368 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 5 942 311 298 77 55 chr9 46843806 46844172 -77232000 - L1_Mur3 LINE L1 -4188 1692 1319 5 942 867 211 103 0 chr9 46844513 46844707 -77231465 - B3 SINE B2 0 216 3 5 942 237 108 0 0 chr9 46844854 46844891 -77231281 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 942 1945 161 71 31 chr9 46845124 46845556 -77230616 + RLTR33 LTR ERVK 3 375 -303 5 942 420 145 0 0 chr9 46845569 46845638 -77230534 + RLTR33 LTR ERVK 609 677 -1 5 942 320 343 15 36 chr9 46846011 46846255 -77229917 + G-rich Low_complexity Low_complexity 1 238 0 5 942 461 264 86 53 chr9 46847369 46847613 -77228559 + L1MA9 LINE L1 5836 6087 -225 5 942 686 325 97 49 chr9 46848007 46848618 -77227554 + L1ME3B LINE L1 4154 4793 -1353 5 942 342 0 0 0 chr9 46848618 46848656 -77227516 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 942 686 325 97 49 chr9 46848656 46849089 -77227083 + L1ME3B LINE L1 4794 5248 -898 5 942 1143 269 23 20 chr9 46849196 46849500 -77226672 - MTE2b LTR MaLR 0 379 75 5 942 662 303 31 61 chr9 46849532 46850083 -77226089 + L1ME3B LINE L1 5346 5886 -354 5 942 414 0 0 0 chr9 46851838 46851884 -77224288 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 942 252 0 0 0 chr9 46851884 46851912 -77224260 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 942 185 325 50 61 chr9 46851915 46852095 -77224077 + L2 LINE L2 1921 2098 -1321 5 942 348 281 114 23 chr9 46852289 46852420 -77223752 + MER21B LTR ERV1 96 238 -625 5 942 1042 91 28 0 chr9 46853389 46853532 -77222640 + B1_Mus1 SINE Alu 1 147 -1 5 942 383 275 189 15 chr9 46854341 46854537 -77221635 + L3 LINE CR1 4259 4488 -1 5 942 290 316 21 10 chr9 46855622 46855718 -77220454 + CT-rich Low_complexity Low_complexity 4 100 0 5 942 370 178 156 58 chr9 46856370 46856476 -77219696 + RMER17C LTR ERVK 86 185 -225 5 942 887 70 28 28 chr9 46856476 46856652 -77219520 + (TTCTC)n Simple_repeat Simple_repeat 1 176 0 5 942 370 178 156 58 chr9 46856652 46856718 -77219454 + RMER17C LTR ERVK 186 275 -135 5 942 407 298 152 0 chr9 46857187 46857345 -77218827 + MER63A DNA AcHobo 4 185 -25 5 942 369 0 0 0 chr9 46857376 46857417 -77218755 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 942 892 79 0 14 chr9 46857417 46857557 -77218615 + (TG)n Simple_repeat Simple_repeat 2 140 0 5 942 638 284 6 17 chr9 46857878 46858050 -77218122 + B3A SINE B2 14 183 -15 5 942 2026 157 75 3 chr9 46858058 46858416 -77217756 + ORR1C2 LTR MaLR 1 384 0 5 942 246 213 49 0 chr9 46858537 46858598 -77217574 + L2a LINE L2 3362 3425 -1 5 942 468 0 0 0 chr9 46859637 46859689 -77216483 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 942 3292 184 12 0 chr9 46859775 46860347 -77215825 - Lx9 LINE L1 -387 7257 6679 5 942 205 324 14 14 chr9 46860527 46860599 -77215573 + MIRc SINE MIR 85 156 -112 5 942 514 149 43 0 chr9 46860862 46860956 -77215216 + Lx9 LINE L1 6995 7092 -552 5 942 282 311 139 59 chr9 46861976 46862178 -77213994 + Charlie8 DNA MER1_type 38 255 -2173 5 942 422 36 18 0 chr9 46863402 46863458 -77212714 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 942 551 15 15 0 chr9 46864178 46864246 -77211926 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 942 27 0 0 0 chr9 46864330 46864357 -77211815 + AT_rich Low_complexity Low_complexity 1 27 0 5 942 259 319 181 46 chr9 46866620 46866880 -77209292 + MLT1I LTR MaLR 104 398 -13 5 942 537 306 42 7 chr9 46867326 46867510 -77208662 - MLT1A0 LTR MaLR 0 408 196 5 942 248 342 124 32 chr9 46867582 46867802 -77208370 - B4 SINE B4 -10 282 52 5 942 321 240 65 28 chr9 46867814 46867921 -77208251 - MLT1A0 LTR MaLR -202 163 53 5 942 387 0 0 0 chr9 46868333 46868376 -77207796 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 942 251 313 0 0 chr9 46869581 46869648 -77206524 + CT-rich Low_complexity Low_complexity 4 70 0 5 942 342 195 0 0 chr9 46870948 46871025 -77205147 + GA-rich Low_complexity Low_complexity 2 78 0 5 942 590 242 104 52 chr9 46871065 46871335 -77204837 + B4 SINE B4 7 290 -2 5 942 595 144 18 24 chr9 46871339 46871503 -77204669 + (CA)n Simple_repeat Simple_repeat 1 163 0 5 942 411 209 0 0 chr9 46871540 46871655 -77204517 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 942 281 335 39 26 chr9 46873594 46873750 -77202422 + L1ME3 LINE L1 6003 6160 -2 5 942 605 273 0 78 chr9 46874499 46874666 -77201506 + MTE2b LTR MaLR 1 154 -225 5 942 429 226 0 0 chr9 46874677 46874792 -77201380 + (TG)n Simple_repeat Simple_repeat 1 115 0 5 942 272 276 0 9 chr9 46874799 46874905 -77201267 + (TATATG)n Simple_repeat Simple_repeat 1 105 0 5 942 323 308 7 124 chr9 46874971 46875108 -77201064 + MTE2b LTR MaLR 220 340 -39 5 942 312 200 0 0 chr9 46875347 46875412 -77200760 + (ATG)n Simple_repeat Simple_repeat 1 65 0 5 942 388 364 40 12 chr9 46876426 46876679 -77199493 - MIR SINE MIR -2 260 1 5 942 230 395 20 20 chr9 46877045 46877195 -77198977 + MIRb SINE MIR 111 260 -8 5 942 294 95 0 0 chr9 46877384 46877426 -77198746 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 942 513 58 0 0 chr9 46877537 46877606 -77198566 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 942 695 12 12 0 chr9 46878268 46878352 -77197820 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 942 256 307 84 96 chr9 46880217 46880243 -77195929 - RSINE1 SINE B4 0 165 149 5 942 414 0 0 0 chr9 46880243 46880289 -77195883 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 942 256 307 84 96 chr9 46880289 46880428 -77195744 - RSINE1 SINE B4 -17 148 2 5 942 456 291 0 0 chr9 46880928 46881038 -77195134 + L2c LINE L2 3277 3386 -1 5 942 210 345 40 26 chr9 46881089 46881241 -77194931 + MIRb SINE MIR 24 177 -91 5 942 251 54 0 26 chr9 46882555 46882593 -77193579 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 5 942 1054 244 29 11 chr9 46882921 46883194 -77192978 + Charlie16a DNA MER1_type 4 281 -61 5 942 250 316 22 15 chr9 46884220 46884338 -77191834 + MIRc SINE MIR 12 128 -140 6 942 911 265 140 7 chr9 46886126 46886419 -77189753 + MTD LTR MaLR 68 399 -20 6 942 430 259 20 20 chr9 46886455 46886707 -77189465 + GA-rich Low_complexity Low_complexity 1 252 0 6 942 238 313 23 35 chr9 46886926 46887012 -77189160 - ID SINE ID -138 86 2 6 942 452 210 32 43 chr9 46887020 46887157 -77189015 - B1F SINE Alu 0 149 18 6 942 277 256 54 74 chr9 46887938 46888086 -77188086 - MIRc SINE MIR -118 150 6 6 942 663 226 0 24 chr9 46888227 46888370 -77187802 - MTEa LTR MaLR -9 370 231 6 942 329 189 94 62 chr9 46888372 46888468 -77187704 - MTEa LTR MaLR -257 102 4 6 942 1941 139 47 77 chr9 46889064 46889429 -77186743 - ORR1B1 LTR MaLR 0 394 41 6 942 232 302 68 17 chr9 46889436 46889554 -77186618 - L1MD3 LINE L1 -20 7975 7852 6 942 660 239 19 80 chr9 46889558 46889790 -77186382 + B3A SINE B2 1 198 0 6 942 1715 225 18 25 chr9 46889863 46890297 -77185875 - L1MD3 LINE L1 -221 7774 7344 6 942 305 300 20 0 chr9 46890390 46890490 -77185682 - Tigger15a DNA TcMar -132 583 482 6 942 398 272 111 25 chr9 46891108 46891270 -77184902 - MLT1J1 LTR MaLR -234 210 35 6 942 353 276 9 9 chr9 46891828 46891934 -77184238 + L1M4c LINE L1 73 178 -6852 6 942 952 220 50 36 chr9 46891960 46892016 -77184156 - URR1B DNA MER1_type 0 225 176 6 942 3015 161 57 14 chr9 46892016 46892577 -77183595 + RMER4B LTR ERVK 1 585 0 6 942 952 220 50 36 chr9 46892577 46892742 -77183430 - URR1B DNA MER1_type -50 175 1 6 942 631 288 103 43 chr9 46893422 46893770 -77182402 + L1M4c LINE L1 1728 2096 -4934 6 942 3425 228 71 15 chr9 46893785 46894710 -77181462 + RMER1C Other Other 13 1340 -2 6 942 1154 283 80 28 chr9 46894807 46895503 -77180669 + L1M4c LINE L1 1842 2502 -4606 6 942 181 350 15 68 chr9 46896098 46896230 -77179942 + L2 LINE L2 2648 2772 -647 6 942 466 309 84 32 chr9 46896689 46896843 -77179329 + B4A SINE B4 1 162 -130 6 942 424 316 84 16 chr9 46897455 46897645 -77178527 - MIRc SINE MIR -49 219 17 6 942 429 70 0 0 chr9 46897774 46897831 -77178341 + (GGGTG)n Simple_repeat Simple_repeat 1 57 0 6 942 242 248 54 27 chr9 46897833 46897945 -77178227 + (GAATG)n Simple_repeat Simple_repeat 2 116 0 6 942 254 309 191 38 chr9 46898204 46898523 -77177649 + L2c LINE L2 2183 2550 -869 6 942 229 377 49 55 chr9 46898888 46899233 -77176939 + L2c LINE L2 3044 3386 -1 6 942 300 297 29 38 chr9 46899232 46899337 -77176835 + MIRc SINE MIR 61 164 -104 6 942 331 361 96 34 chr9 46899340 46899549 -77176623 - MIRb SINE MIR -31 237 16 6 942 273 228 18 0 chr9 46899591 46899648 -77176524 + MIRc SINE MIR 191 248 -20 6 942 794 278 25 29 chr9 46900614 46900818 -77175354 - B3 SINE B2 -3 213 11 6 942 621 239 43 193 chr9 46901300 46901561 -77174611 + B4A SINE B4 1 229 -63 6 942 904 133 35 7 chr9 46901561 46901705 -77174467 + B1_Mur3 SINE Alu 2 149 0 6 942 621 239 43 193 chr9 46901705 46901770 -77174402 + B4A SINE B4 230 278 -14 6 942 389 206 0 10 chr9 46901807 46901910 -77174262 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 942 518 233 67 25 chr9 46902134 46902253 -77173919 - ID_B1 SINE B4 -2 222 99 6 942 189 339 16 0 chr9 46902910 46902972 -77173200 + MIR3 SINE MIR 108 170 -38 6 942 2465 125 24 0 chr9 46903091 46903460 -77172712 - ORR1C1 LTR MaLR 0 378 1 6 942 238 365 9 0 chr9 46904073 46904188 -77171984 + (CA)n Simple_repeat Simple_repeat 1 116 0 6 942 673 300 74 34 chr9 46904486 46904617 -77171555 + B4 SINE B4 1 141 -151 6 942 405 0 0 0 chr9 46904617 46904662 -77171510 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 942 673 300 74 34 chr9 46904662 46904799 -77171373 + B4 SINE B4 142 279 -13 6 942 498 308 30 94 chr9 46904898 46904960 -77171212 + B4 SINE B4 23 76 -216 6 942 180 0 0 0 chr9 46904960 46904980 -77171192 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 942 498 308 30 94 chr9 46904980 46905118 -77171054 + B4 SINE B4 77 210 -82 6 942 203 161 0 0 chr9 46905119 46905150 -77171022 + polypyrimidine Low_complexity Low_complexity 3 33 0 6 942 746 153 6 18 chr9 46905154 46905320 -77170852 + CT-rich Low_complexity Low_complexity 1 164 0 6 942 180 125 0 0 chr9 46905358 46905390 -77170782 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 942 452 117 13 0 chr9 46905483 46905560 -77170612 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 942 408 261 102 25 chr9 46908005 46908123 -77168049 + B4A SINE B4 5 131 -161 6 942 241 292 46 19 chr9 46908924 46909032 -77167140 - LTR16E2 LTR ERVL -8 560 450 6 942 1567 213 147 28 chr9 46909263 46909766 -77166406 + RLTR20B3 LTR ERVK 1 563 -14 6 942 803 160 17 6 chr9 46911124 46911300 -77164872 + CT-rich Low_complexity Low_complexity 1 178 0 6 942 1457 252 77 14 chr9 46912787 46913105 -77163067 + MTD LTR MaLR 20 352 -67 6 942 564 42 0 0 chr9 46913105 46913176 -77162996 + (TCCC)n Simple_repeat Simple_repeat 1 71 0 6 942 1457 252 77 14 chr9 46913176 46913219 -77162953 + MTD LTR MaLR 353 403 -16 6 942 425 351 33 0 chr9 46914038 46914189 -77161983 - MER63A DNA AcHobo -23 187 32 6 942 315 0 0 0 chr9 46914218 46914253 -77161919 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 942 207 204 0 0 chr9 46914266 46914310 -77161862 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 942 943 131 11 11 chr9 46914327 46914505 -77161667 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 6 942 974 101 0 48 chr9 46914656 46914844 -77161328 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 6 942 335 23 0 22 chr9 46914912 46914957 -77161215 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 942 717 34 0 0 chr9 46915395 46915483 -77160689 + (TC)n Simple_repeat Simple_repeat 2 89 0 6 942 188 163 23 0 chr9 46916640 46916683 -77159489 + CT-rich Low_complexity Low_complexity 4 47 0 6 942 356 335 86 43 chr9 46917510 46917719 -77158453 - MLT1G LTR MaLR -307 284 67 6 942 396 0 0 0 chr9 46917747 46917791 -77158381 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 942 1022 269 77 22 chr9 46917828 46918102 -77158070 - B4A SINE B4 -3 289 1 6 942 1662 195 129 3 chr9 46920038 46920403 -77155769 - MTD LTR MaLR -4 415 5 6 942 288 295 40 40 chr9 46920582 46920755 -77155417 + L1MB2 LINE L1 5999 6171 0 6 942 638 300 62 7 chr9 46920792 46921064 -77155108 + B4A SINE B4 1 287 -5 6 942 249 318 0 15 chr9 46921168 46921235 -77154937 + PB1D10 SINE Alu 13 78 -39 6 942 241 339 0 0 chr9 46921266 46921325 -77154847 + ID4_ SINE ID 25 83 0 6 942 245 161 339 0 chr9 46921444 46921506 -77154666 + ID4_ SINE ID 1 83 0 6 942 248 261 16 83 chr9 46921607 46921728 -77154444 + Lx8 LINE L1 7357 7469 -4 6 942 393 184 40 0 chr9 46921888 46921964 -77154208 + ID4 SINE ID 1 79 -4 6 943 327 314 137 0 chr9 46923783 46923907 -77152265 - L2b LINE L2 -11 3364 3224 6 943 267 342 25 0 chr9 46924380 46924459 -77151713 + MTEa LTR MaLR 299 379 0 6 943 276 331 32 40 chr9 46926138 46926264 -77149908 + B4 SINE B4 9 133 -159 6 943 519 17 0 0 chr9 46927637 46927697 -77148475 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 943 765 281 32 45 chr9 46927727 46927947 -77148225 - MTEa LTR MaLR -162 217 1 6 943 297 0 0 0 chr9 46927974 46928007 -77148165 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 943 374 330 79 58 chr9 46929151 46929307 -77146865 + LTR78 LTR ERV1 99 267 -1037 6 943 2343 154 35 0 chr9 46929307 46929684 -77146488 - ORR1B1 LTR MaLR 0 394 5 6 943 374 330 79 58 chr9 46929684 46929717 -77146455 + LTR78 LTR ERV1 268 292 -1012 6 943 1144 128 26 16 chr9 46929730 46929921 -77146251 + URR1A DNA MER1_type 33 225 -1 6 943 302 308 19 95 chr9 46930681 46930839 -77145333 + HAL1-3A_ME LINE L1 2292 2437 -421 6 943 394 129 12 12 chr9 46930858 46930944 -77145228 + GA-rich Low_complexity Low_complexity 4 89 0 6 943 476 32 16 0 chr9 46930944 46931006 -77145166 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 6 943 246 239 0 0 chr9 46931822 46931893 -77144279 + GA-rich Low_complexity Low_complexity 3 73 0 6 943 495 0 0 0 chr9 46932103 46932158 -77144014 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 943 576 296 37 20 chr9 46933306 46933603 -77142569 - L1M5 LINE L1 -846 5300 4999 6 943 380 327 53 0 chr9 46934576 46934689 -77141483 + B4A SINE B4 2 120 -172 6 943 252 0 0 0 chr9 46934691 46934719 -77141453 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 943 946 59 8 0 chr9 46934721 46934840 -77141332 - B1_Mus1 SINE Alu 0 148 29 6 943 253 229 200 0 chr9 46934847 46934917 -77141255 + B4A SINE B4 123 206 -86 6 943 432 0 0 0 chr9 46934959 46935007 -77141165 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 943 306 0 0 0 chr9 46935725 46935759 -77140413 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 943 190 283 47 62 chr9 46938223 46938287 -77137885 - L3 LINE CR1 -6 4483 4421 6 943 276 255 55 141 chr9 46938327 46938455 -77137717 + L2b LINE L2 3259 3375 0 6 943 347 301 27 87 chr9 46938607 46938756 -77137416 - L2a LINE L2 -2 3424 3285 6 943 412 264 229 0 chr9 46938946 46939152 -77137020 + B4A SINE B4 20 272 -20 6 943 567 71 0 0 chr9 46939157 46939242 -77136930 + (GA)n Simple_repeat Simple_repeat 2 86 0 6 943 180 0 0 0 chr9 46940279 46940299 -77135873 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 943 803 284 100 19 chr9 46940355 46940624 -77135548 - B4 SINE B4 0 292 2 6 943 912 87 0 0 chr9 46940624 46940751 -77135421 + (TG)n Simple_repeat Simple_repeat 2 128 0 6 943 1181 82 0 0 chr9 46940794 46940940 -77135232 + B1_Mus2 SINE Alu 2 147 0 6 943 645 80 0 0 chr9 46940946 46941034 -77135138 + (GAAAA)n Simple_repeat Simple_repeat 3 90 0 6 943 632 281 0 0 chr9 46941034 46941162 -77135010 - RSINE1 SINE B4 -36 129 2 6 943 40 0 0 0 chr9 46941163 46941203 -77134969 + AT_rich Low_complexity Low_complexity 1 40 0 6 943 279 340 70 43 chr9 46941284 46941453 -77134719 - MIR SINE MIR -61 207 33 6 943 270 0 0 0 chr9 46941609 46941639 -77134533 + (A)n Simple_repeat Simple_repeat 1 30 0 6 943 1034 339 23 23 chr9 46943772 46944252 -77131920 - L2 LINE L2 -522 2897 2418 6 943 1082 264 91 31 chr9 46944530 46944983 -77131189 + L3 LINE CR1 3582 4061 -428 7 943 396 0 0 0 chr9 46946120 46946164 -77130008 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 943 261 0 0 0 chr9 46946164 46946192 -77129980 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 943 200 378 27 9 chr9 46946711 46946823 -77129349 - MIR SINE MIR -61 147 34 7 943 353 109 16 0 chr9 46949970 46950034 -77126138 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 943 450 342 15 40 chr9 46950727 46950928 -77125244 - MLT1H LTR MaLR -313 236 41 7 943 1169 245 58 22 chr9 46951903 46952216 -77123956 + MTEb LTR MaLR 1 324 -55 7 943 360 234 26 184 chr9 46952217 46952369 -77123803 + MTE2a LTR MaLR 2 129 -250 7 943 1151 283 72 46 chr9 46952304 46952763 -77123409 + MT2A LTR ERVL 63 533 0 7 943 576 0 0 0 chr9 46953199 46953263 -77122909 + (GAGAA)n Simple_repeat Simple_repeat 5 68 0 7 943 1305 83 0 0 chr9 46953263 46953442 -77122730 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 7 943 186 43 0 0 chr9 46953442 46953465 -77122707 + (GGAAA)n Simple_repeat Simple_repeat 1 23 0 7 943 276 253 51 31 chr9 46953477 46953575 -77122597 - RMER15 LTR ERVL -97 478 379 7 943 213 211 0 0 chr9 46954370 46954427 -77121745 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 7 943 2385 229 162 21 chr9 46954429 46955358 -77120814 - Lx8 LINE L1 -142 7331 6271 7 943 1808 52 26 0 chr9 46955689 46955922 -77120250 + L1Md_F2 LINE L1 6342 6580 -2 7 943 941 108 18 12 chr9 46957908 46958076 -77118096 + (GAGAA)n Simple_repeat Simple_repeat 1 169 0 7 943 664 144 35 18 chr9 46958076 46958246 -77117926 + GA-rich Low_complexity Low_complexity 4 176 0 7 943 564 29 0 0 chr9 46958327 46958397 -77117775 + (GA)n Simple_repeat Simple_repeat 1 70 0 7 943 1114 283 70 17 chr9 46958716 46959072 -77117100 + MTEa LTR MaLR 5 379 0 7 943 1356 246 73 20 chr9 46959072 46959467 -77116705 + MTEa-int LTR MaLR 1 416 -1164 7 943 470 239 101 0 chr9 46959678 46959787 -77116385 - B1F2 SINE Alu -20 129 10 7 943 324 0 0 0 chr9 46959789 46959825 -77116347 + (CTAA)n Simple_repeat Simple_repeat 4 39 0 7 943 423 38 0 0 chr9 46961979 46962032 -77114140 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 943 569 229 136 32 chr9 46962163 46962384 -77113788 - L1M2 LINE L1 -973 5170 4927 7 943 416 268 124 5 chr9 46962385 46962595 -77113577 + L1MA6 LINE L1 5942 6176 -124 7 943 32 57 0 0 chr9 46962596 46962649 -77113523 + AT_rich Low_complexity Low_complexity 1 53 0 7 943 471 255 128 0 chr9 46962679 46962820 -77113352 + RSINE1 SINE B4 3 161 -4 7 943 487 185 85 71 chr9 46962985 46963144 -77113028 + B3A SINE B2 5 165 -51 7 943 615 92 0 0 chr9 46963144 46963231 -77112941 + (TC)n Simple_repeat Simple_repeat 1 87 0 7 943 1055 93 19 6 chr9 46963318 46963480 -77112692 + B2_Mm2 SINE B2 2 165 -30 7 943 333 218 11 54 chr9 46963693 46963785 -77112387 + PB1D7 SINE Alu 25 112 -8 7 943 201 226 0 0 chr9 46963827 46963880 -77112292 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 943 243 0 0 0 chr9 46964844 46964871 -77111301 + (A)n Simple_repeat Simple_repeat 1 27 0 7 943 309 244 48 40 chr9 46965825 46965949 -77110223 + MIRc SINE MIR 30 154 -114 7 943 220 242 97 3 chr9 46966108 46966199 -77109973 + MIRc SINE MIR 55 156 -112 7 943 302 270 67 39 chr9 46967326 46967430 -77108742 + L1ME3A LINE L1 5290 5396 -750 7 943 321 290 50 59 chr9 46967498 46967718 -77108454 + L1MA5A LINE L1 5262 5479 -824 7 943 249 248 151 50 chr9 46967728 46967847 -77108325 + Lx8 LINE L1 7314 7444 -29 7 943 4287 108 14 3 chr9 46968025 46968943 -77107229 - Lx LINE L1 -516 6138 5201 7 943 3276 96 28 9 chr9 46968942 46969404 -77106768 + Lx LINE L1 6151 6621 -33 7 943 346 38 19 19 chr9 46969404 46969457 -77106715 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 7 943 400 264 37 26 chr9 46969470 46969724 -77106448 + L1MA5A LINE L1 5589 5875 -425 7 943 250 296 94 77 chr9 46969870 46970210 -77105962 + L1ME3A LINE L1 5523 5868 -305 7 943 764 276 104 63 chr9 46970507 46970871 -77105301 + MTEa LTR MaLR 1 379 0 7 943 790 261 16 11 chr9 46971329 46971519 -77104653 + B3A SINE B2 2 192 -6 7 943 319 283 97 58 chr9 46971531 46971839 -77104333 + L1M5 LINE L1 4020 4339 -1807 7 943 330 361 55 16 chr9 46972364 46972727 -77103445 + L1M5 LINE L1 5027 5403 -743 7 943 635 216 82 247 chr9 46972732 46973186 -77102986 + MTE2a LTR MaLR 1 379 0 7 943 324 0 0 0 chr9 46973201 46973237 -77102935 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 943 390 101 0 0 chr9 46973237 46973306 -77102866 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 943 277 354 30 18 chr9 46973308 46973475 -77102697 + L1ME3A LINE L1 5993 6161 -12 7 943 486 0 0 0 chr9 46974015 46974069 -77102103 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 943 379 246 26 60 chr9 46976626 46976743 -77099429 + B1F SINE Alu 24 136 -13 7 943 923 9 18 0 chr9 46976744 46976855 -77099317 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 7 943 273 338 0 0 chr9 46978533 46978607 -77097565 + RSINE1 SINE B4 2 75 -90 7 943 621 290 138 25 chr9 46979348 46979911 -77096261 - L1MEg LINE L1 -2001 4145 3519 7 943 286 236 128 27 chr9 46980142 46980290 -77095882 - L1MEg LINE L1 -4728 1514 1352 7 943 23 68 0 0 chr9 46980384 46980428 -77095744 + AT_rich Low_complexity Low_complexity 1 44 0 7 943 228 332 73 43 chr9 46980657 46980890 -77095282 + L1MEc LINE L1 210 449 -5951 7 943 227 294 138 22 chr9 46981163 46981344 -77094828 + L1MEc LINE L1 778 979 -5421 7 943 362 277 103 90 chr9 46981938 46982093 -77094079 - B4A SINE B4 -135 157 1 7 943 347 321 9 60 chr9 46982295 46982411 -77093761 + PB1D10 SINE Alu 1 110 -7 7 943 2527 271 75 3 chr9 46982448 46983085 -77093087 + Lx8 LINE L1 6465 7147 -326 7 943 393 269 21 21 chr9 46983106 46983201 -77092971 + Lx8 LINE L1 7224 7318 -155 7 943 572 283 7 46 chr9 46983244 46983396 -77092776 - B3A SINE B2 -48 150 5 7 943 337 290 115 6 chr9 46984996 46985152 -77091020 + MIR SINE MIR 4 176 -86 7 943 545 211 10 0 chr9 46985159 46985362 -77090810 + GA-rich Low_complexity Low_complexity 1 205 0 7 943 1251 56 0 0 chr9 46985370 46985530 -77090642 + (GGAGA)n Simple_repeat Simple_repeat 3 162 0 7 943 880 317 136 34 chr9 46986590 46987149 -77089023 - Lx8 LINE L1 -21 7452 6837 7 943 235 214 35 35 chr9 46987364 46987422 -77088750 + MLT1I LTR MaLR 354 411 0 7 943 1430 289 131 29 chr9 46988219 46988814 -77087358 + Lx8 LINE L1 6801 7456 -17 7 943 312 387 42 3 chr9 46989137 46989420 -77086752 + ERVL-int LTR ERVL 2295 2588 -3169 7 943 455 336 133 0 chr9 46990041 46990267 -77085905 + MLT1E2 LTR MaLR 38 293 -334 7 943 384 59 0 0 chr9 46990473 46990524 -77085648 + (TA)n Simple_repeat Simple_repeat 2 52 0 7 943 576 327 81 52 chr9 46990752 46991280 -77084892 + ERVL-E-int LTR ERVL 4218 4707 -960 7 943 223 314 46 11 chr9 46991407 46991494 -77084678 - MIR SINE MIR -2 260 171 7 943 240 111 0 0 chr9 46992330 46992366 -77083806 + (TTCC)n Simple_repeat Simple_repeat 4 39 0 7 943 559 167 14 0 chr9 46992979 46993117 -77083055 + (TG)n Simple_repeat Simple_repeat 1 140 0 7 943 795 317 35 7 chr9 46993117 46993400 -77082772 - B4 SINE B4 0 292 2 7 943 965 240 17 0 chr9 46995391 46995624 -77080548 - Helitron1Na_Mam RC Helitron -11 1051 815 7 943 857 248 114 4 chr9 46995641 46995896 -77080276 - Helitron1Nb_Mam RC Helitron -807 309 27 7 943 774 75 0 0 chr9 46996181 46996287 -77079885 + (TG)n Simple_repeat Simple_repeat 2 107 0 7 943 936 280 5 0 chr9 46996315 46996533 -77079639 - B4 SINE B4 -72 220 2 7 943 230 217 0 0 chr9 46996769 46996815 -77079357 - ORR1D1 LTR MaLR 0 374 329 7 943 334 236 0 14 chr9 46996816 46996889 -77079283 - Lx8 LINE L1 -185 7288 7217 7 943 293 242 116 37 chr9 46997204 46997393 -77078779 + L2a LINE L2 2961 3164 -262 7 943 741 287 43 0 chr9 46997890 46998099 -77078073 + ID_B1 SINE B4 1 218 -6 7 943 1165 316 102 56 chr9 46998115 46998697 -77077475 - L1MD2 LINE L1 -75 6284 5664 7 943 1121 103 0 0 chr9 46998697 46998843 -77077329 + B1_Mus1 SINE Alu 2 147 -1 7 943 1165 316 102 56 chr9 46998843 46999050 -77077122 - L1MD2 LINE L1 -696 5663 5458 7 943 474 178 0 0 chr9 46999075 46999165 -77077007 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 7 943 284 222 0 0 chr9 46999165 46999219 -77076953 + MTD LTR MaLR 14 67 -354 7 943 451 44 29 0 chr9 46999221 46999274 -77076898 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 943 441 0 0 0 chr9 46999274 46999323 -77076849 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 943 451 44 29 0 chr9 46999323 46999337 -77076835 + (TA)n Simple_repeat Simple_repeat 1 14 0 7 943 666 200 43 12 chr9 46999359 46999521 -77076651 + MTD LTR MaLR 251 417 -2 7 943 291 284 113 20 chr9 46999522 46999673 -77076499 - L1MD2 LINE L1 -902 5457 5293 7 943 426 250 47 39 chr9 46999768 46999897 -77076275 - Lx8 LINE L1 -159 7314 7185 7 943 503 194 65 0 chr9 46999906 46999999 -77076173 - B1_Mur1 SINE Alu -34 115 17 7 943 2201 291 98 71 chr9 47000044 47000499 -77075673 - L1MDb LINE L1 -867 5670 5137 1 943 1416 221 65 51 chr9 47000499 47000871 -77075301 - MTE2a LTR MaLR 0 379 3 2 943 2201 291 98 71 chr9 47000871 47002306 -77073866 - L1MDb LINE L1 -1401 5136 3729 1 943 234 268 12 35 chr9 47002307 47002392 -77073780 + (TATG)n Simple_repeat Simple_repeat 2 84 0 3 943 885 292 23 50 chr9 47002408 47002707 -77073465 - B4A SINE B4 0 292 2 4 943 587 240 61 47 chr9 47002788 47003001 -77073171 - B3A SINE B2 0 216 1 5 943 216 0 0 0 chr9 47003034 47003058 -77073114 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 943 645 276 110 68 chr9 47003188 47003569 -77072603 - L1MB3 LINE L1 -26 6157 5761 7 943 475 262 87 5 chr9 47003599 47003783 -77072389 - L1MDb LINE L1 -3181 3356 3158 1 943 9193 3 0 0 chr9 47003842 47005544 -77070628 - L1Md_A LINE L1 0 6582 4881 8 943 6346 8 0 0 chr9 47005542 47006249 -77069923 + L1Md_A LINE L1 4188 4894 -989 8 943 339 169 0 15 chr9 47006347 47006413 -77069759 - L1MDb LINE L1 -4044 2589 2525 1 943 182 119 0 45 chr9 47006440 47006484 -77069688 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 9 943 189 0 0 0 chr9 47006490 47006511 -77069661 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 943 1531 285 94 54 chr9 47006684 47008275 -77067897 - L1MDb LINE L1 -4100 2533 870 1 943 539 306 55 53 chr9 47008595 47009065 -77067107 - L1MA4A LINE L1 -1626 6070 5634 1 943 372 59 0 0 chr9 47009114 47009165 -77067007 + (ATGGTG)n Simple_repeat Simple_repeat 6 56 0 1 943 311 337 66 44 chr9 47009332 47009605 -77066567 - L1MDb LINE L1 -6302 331 53 1 943 678 284 37 17 chr9 47009638 47009929 -77066243 - L1M5 LINE L1 -1103 5043 4730 1 943 269 246 8 38 chr9 47009953 47010084 -77066088 - L1M5 LINE L1 -1826 4320 4194 1 943 385 264 0 0 chr9 47010254 47010345 -77065827 + ID_B1 SINE B4 119 209 -15 1 943 319 245 88 0 chr9 47010345 47010356 -77065816 + B1F SINE Alu 38 148 -1 1 943 345 284 12 0 chr9 47010379 47010460 -77065712 + ID4 SINE ID 2 83 0 1 943 278 0 0 0 chr9 47010542 47010572 -77065600 - L1_Mus2 LINE L1 -651 5915 5886 1 943 5489 61 3 1 chr9 47010573 47011258 -77064914 + L1Md_F2 LINE L1 5884 6569 -13 1 943 1430 316 68 91 chr9 47011443 47013100 -77063072 + L1M5 LINE L1 2277 3894 -2252 1 943 27 0 0 0 chr9 47013100 47013127 -77063045 + AT_rich Low_complexity Low_complexity 1 27 0 2 943 604 252 30 0 chr9 47013127 47013258 -77062914 + RSINE1 SINE B4 4 138 -27 2 943 239 184 59 41 chr9 47013258 47013428 -77062744 + (TA)n Simple_repeat Simple_repeat 1 173 0 2 943 1125 271 84 89 chr9 47013577 47014193 -77061979 - RLTR18 LTR ERVK -3 613 1 2 943 590 171 23 0 chr9 47014624 47014800 -77061372 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 943 625 134 34 0 chr9 47014847 47014996 -77061176 + (CA)n Simple_repeat Simple_repeat 1 154 0 2 943 254 204 0 0 chr9 47015048 47015097 -77061075 + L1M5 LINE L1 4883 4931 -1215 1 943 436 195 12 0 chr9 47015097 47015179 -77060993 - B3 SINE B2 -120 96 14 2 943 694 268 24 40 chr9 47015173 47015422 -77060750 - RMER5 LTR ERV1 -57 477 233 2 943 430 165 107 27 chr9 47015485 47015597 -77060575 + RLTR15 LTR ERVK 1 121 -238 2 943 1239 7 0 0 chr9 47015669 47015809 -77060363 + (GGGAGA)n Simple_repeat Simple_repeat 3 142 0 2 943 280 271 22 36 chr9 47015894 47016032 -77060140 + RLTR15 LTR ERVK 221 356 -3 2 943 932 245 60 51 chr9 47016481 47016663 -77059509 - MTE2a LTR MaLR -5 374 189 2 943 489 17 0 0 chr9 47016663 47016721 -77059451 + (CTTG)n Simple_repeat Simple_repeat 1 58 0 3 943 932 280 64 40 chr9 47016721 47016932 -77059240 - MTE2a LTR MaLR -192 227 2 2 943 596 227 6 0 chr9 47017956 47018132 -77058040 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 943 257 306 43 29 chr9 47018519 47018657 -77057515 + L1ME4a LINE L1 5980 6119 -5 3 943 792 167 27 40 chr9 47018804 47018954 -77057218 + B1_Mus1 SINE Alu 1 148 0 3 943 1910 291 81 49 chr9 47019537 47020690 -77055482 + L1_Rod LINE L1 4704 5844 -3 3 943 353 177 13 0 chr9 47020717 47020796 -77055376 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 943 244 418 122 23 chr9 47021601 47021863 -77054309 - MER115 DNA Tip100 -238 455 168 3 943 269 0 0 53 chr9 47022473 47022511 -77053661 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 943 326 306 127 58 chr9 47024044 47024422 -77051750 - L2a LINE L2 -4 3422 3019 3 943 212 283 27 100 chr9 47025943 47026053 -77050119 + L2c LINE L2 3054 3155 -232 3 943 539 269 21 0 chr9 47026159 47026304 -77049868 - B1F SINE Alu -1 148 1 4 943 2346 145 44 31 chr9 47027206 47027619 -77048553 - MTC LTR MaLR 0 421 4 4 943 188 328 47 16 chr9 47028080 47028207 -77047965 + L2a LINE L2 3045 3175 -251 4 943 1907 176 68 53 chr9 47028411 47028824 -77047348 - MTD LTR MaLR 0 419 1 4 943 1323 56 0 0 chr9 47029060 47029402 -77046770 + (CA)n Simple_repeat Simple_repeat 1 342 0 4 943 189 0 0 0 chr9 47029566 47029587 -77046585 + (T)n Simple_repeat Simple_repeat 1 21 0 4 943 466 294 112 11 chr9 47029937 47030116 -77046056 + ID_B1 SINE B4 7 203 -21 4 943 263 281 75 45 chr9 47030148 47030282 -77045890 + ID_B1 SINE B4 86 223 -1 4 943 720 272 45 80 chr9 47030371 47030659 -77045513 + B4A SINE B4 1 278 -14 4 943 210 296 52 67 chr9 47032025 47032159 -77044013 - MIRc SINE MIR -123 145 14 4 943 288 345 9 9 chr9 47033193 47033307 -77042865 - MIR SINE MIR -141 121 8 5 943 1328 280 31 14 chr9 47033919 47034271 -77041901 - MTE2b LTR MaLR -21 358 1 5 943 395 303 15 0 chr9 47034292 47034424 -77041748 - MER63A DNA AcHobo -68 142 9 5 943 207 0 0 0 chr9 47035924 47035947 -77040225 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 5 943 339 302 47 41 chr9 47036072 47036241 -77039931 + MIRb SINE MIR 18 187 -81 5 943 896 140 7 7 chr9 47036254 47036405 -77039767 - URR1B DNA MER1_type -66 159 9 5 943 285 283 64 21 chr9 47036519 47036613 -77039559 - MLT1A1 LTR MaLR -310 98 1 5 943 687 269 159 4 chr9 47038534 47038773 -77037399 + B4A SINE B4 1 276 -16 5 943 230 70 0 65 chr9 47038798 47038844 -77037328 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 943 669 131 0 0 chr9 47038846 47038953 -77037219 + (TA)n Simple_repeat Simple_repeat 2 108 0 5 943 799 308 25 40 chr9 47039582 47039859 -77036313 + B4A SINE B4 12 284 -8 6 943 234 317 28 19 chr9 47040194 47040300 -77035872 - MTEa LTR MaLR -8 371 265 6 943 420 328 33 47 chr9 47040595 47040809 -77035363 - MER20 DNA MER1_type -1 218 8 6 943 420 118 0 0 chr9 47043234 47043302 -77032870 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 943 962 266 40 11 chr9 47043309 47043586 -77032586 - B4A SINE B4 -5 287 3 6 943 236 183 31 77 chr9 47044738 47044803 -77031369 + MIR SINE MIR 189 250 -12 6 943 333 47 0 0 chr9 47045279 47045322 -77030850 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 943 35 0 0 0 chr9 47045335 47045370 -77030802 + AT_rich Low_complexity Low_complexity 1 35 0 6 943 630 301 68 29 chr9 47045390 47045670 -77030502 + B4A SINE B4 2 292 0 6 943 231 312 0 0 chr9 47045671 47045735 -77030437 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 943 250 238 0 0 chr9 47045715 47045778 -77030394 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 7 943 468 296 84 26 chr9 47046159 47046350 -77029822 + B4 SINE B4 91 292 0 7 943 262 298 0 23 chr9 47046471 47046557 -77029615 - MTEb LTR MaLR -24 355 272 7 943 324 0 0 0 chr9 47047934 47047970 -77028202 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 943 423 0 0 0 chr9 47048793 47048840 -77027332 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 943 988 316 122 13 chr9 47049037 47049512 -77026660 - MLT1F2 LTR MaLR -18 542 16 7 943 1149 247 46 7 chr9 47049851 47050132 -77026040 + B4A SINE B4 1 292 0 7 943 180 111 0 0 chr9 47050643 47050670 -77025502 + (AGGTG)n Simple_repeat Simple_repeat 5 31 0 7 943 537 328 3 0 chr9 47051257 47051592 -77024580 + (CA)n Simple_repeat Simple_repeat 1 335 0 7 943 523 319 173 34 chr9 47052217 47052784 -77023388 - MLT1E1 LTR MaLR -1 653 8 7 943 435 38 0 0 chr9 47053640 47053693 -77022479 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 8 943 479 163 0 42 chr9 47053693 47053789 -77022383 + (CAGAGA)n Simple_repeat Simple_repeat 5 96 0 8 943 414 171 40 0 chr9 47054190 47054342 -77021830 + (CA)n Simple_repeat Simple_repeat 1 158 0 8 943 242 302 47 0 chr9 47054514 47054620 -77021552 + L1MC3 LINE L1 7377 7487 -298 8 943 180 0 0 0 chr9 47054637 47054657 -77021515 + (TAA)n Simple_repeat Simple_repeat 2 21 0 8 117 1307 235 3 29 chr9 47054663 47054970 -77021202 + Lx7 LINE L1 7394 7692 -4 8 944 847 217 29 10 chr9 47054973 47055178 -77020994 + L1MC3 LINE L1 7571 7779 -6 8 944 187 290 52 41 chr9 47056039 47056136 -77020036 + MIR3 SINE MIR 90 187 -21 8 944 223 250 0 0 chr9 47056863 47056911 -77019261 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 944 664 249 49 43 chr9 47059277 47059368 -77016804 + B3 SINE B2 3 94 -122 8 944 312 27 0 0 chr9 47059368 47059405 -77016767 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 944 664 249 49 43 chr9 47059405 47059498 -77016674 + B3 SINE B2 95 188 -28 8 944 642 241 35 0 chr9 47059893 47060038 -77016134 + B3A SINE B2 1 150 -48 9 944 252 0 0 0 chr9 47060042 47060070 -77016102 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 944 450 0 0 0 chr9 47060070 47060119 -77016053 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 944 203 286 24 83 chr9 47060457 47060541 -77015631 - MIRc SINE MIR -110 158 80 9 944 332 365 33 26 chr9 47060985 47061137 -77015035 + MLT1K LTR MaLR 71 223 -372 9 944 332 298 100 113 chr9 47061316 47061607 -77014565 + B4 SINE B4 6 292 0 9 944 436 296 6 6 chr9 47061635 47061815 -77014357 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 944 237 210 0 0 chr9 47061852 47061914 -77014258 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 944 1314 235 154 19 chr9 47062356 47062725 -77013447 + MTD LTR MaLR 1 419 0 9 944 322 309 99 93 chr9 47062794 47063158 -77013014 - ORR1D2 LTR MaLR 0 370 5 9 944 727 315 63 49 chr9 47063183 47063470 -77012702 + B4A SINE B4 2 292 0 9 944 483 134 39 39 chr9 47063472 47063651 -77012521 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 944 219 209 45 23 chr9 47063659 47063747 -77012425 + (CATA)n Simple_repeat Simple_repeat 2 91 0 1 944 277 117 33 0 chr9 47063769 47063829 -77012343 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 944 349 198 15 22 chr9 47063872 47064006 -77012166 + (CA)n Simple_repeat Simple_repeat 1 133 0 1 944 357 355 49 29 chr9 47064851 47065196 -77010976 + L2b LINE L2 2757 3106 -269 1 944 284 29 0 0 chr9 47065743 47065777 -77010395 + U2 snRNA snRNA 1 34 -154 1 944 1352 94 0 6 chr9 47065777 47065958 -77010214 - B2_Mm2 SINE B2 -15 180 1 1 944 24 32 0 0 chr9 47066298 47066329 -77009843 + AT_rich Low_complexity Low_complexity 1 31 0 1 944 321 369 69 49 chr9 47067208 47067496 -77008676 - L2b LINE L2 -1 3374 3081 1 944 635 268 21 21 chr9 47067679 47067903 -77008269 + B4A SINE B4 1 257 -35 1 944 333 0 0 0 chr9 47067917 47067954 -77008218 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 944 398 69 17 0 chr9 47067956 47068014 -77008158 + (AGGGGG)n Simple_repeat Simple_repeat 6 64 0 1 944 216 295 91 57 chr9 47069474 47069650 -77006522 - L2b LINE L2 -261 3114 2933 1 944 538 255 34 54 chr9 47069651 47069800 -77006372 + B1F SINE Alu 1 146 -3 1 944 207 0 0 0 chr9 47069883 47069906 -77006266 + (CG)n Simple_repeat Simple_repeat 2 24 0 1 944 306 0 0 0 chr9 47069906 47069939 -77006233 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 944 443 384 91 18 chr9 47070111 47070673 -77005499 - L2b LINE L2 -834 2585 1983 1 944 453 261 130 0 chr9 47070760 47070875 -77005297 + ID_B1 SINE B4 95 224 0 1 944 895 128 56 14 chr9 47070989 47071132 -77005040 - B1_Mur4 SINE Alu 0 150 2 1 944 1357 225 90 20 chr9 47072049 47072394 -77003778 + ORR1D2 LTR MaLR 2 370 0 1 944 207 0 0 0 chr9 47072575 47072598 -77003574 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 944 236 304 48 87 chr9 47074794 47074920 -77001252 - LTR81A LTR ERV1? -857 493 373 1 944 262 274 118 24 chr9 47079006 47079133 -76997039 + MIRb SINE MIR 46 184 -84 1 944 508 150 0 27 chr9 47079348 47079458 -76996714 + GA-rich Low_complexity Low_complexity 4 110 0 1 944 1502 115 18 9 chr9 47079468 47079687 -76996485 - URR1B DNA MER1_type 0 225 5 1 944 2951 9 0 0 chr9 47079850 47080172 -76996000 + RLTRETN_Mm LTR ERVK 1 322 0 1 944 1523 206 17 34 chr9 47080783 47081079 -76995093 + B4A SINE B4 2 292 0 1 944 362 351 35 66 chr9 47081234 47081490 -76994682 + L2 LINE L2 2746 2993 -426 1 944 204 268 0 18 chr9 47081980 47082037 -76994135 + C-rich Low_complexity Low_complexity 1 56 0 1 944 230 29 0 56 chr9 47084287 47084323 -76991849 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 1 944 360 0 0 0 chr9 47084398 47084438 -76991734 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 944 336 271 163 15 chr9 47085990 47086125 -76990047 + HAL1-3A_ME LINE L1 2284 2438 -420 1 944 391 282 29 0 chr9 47086362 47086465 -76989707 + PB1D10 SINE Alu 10 115 -2 1 944 223 282 18 12 chr9 47086482 47086555 -76989617 + B1F SINE Alu 47 149 0 1 944 234 300 78 0 chr9 47087348 47087438 -76988734 + LTR79 LTR ERVL 293 389 -138 1 944 209 365 134 6 chr9 47087612 47087769 -76988403 + MIRc SINE MIR 2 178 -90 1 944 30 0 0 0 chr9 47089195 47089225 -76986947 + AT_rich Low_complexity Low_complexity 1 30 0 1 944 187 277 76 15 chr9 47090411 47090477 -76985695 - MIR SINE MIR -107 101 32 1 944 773 86 8 0 chr9 47091272 47091400 -76984772 + (GA)n Simple_repeat Simple_repeat 1 129 0 1 944 190 229 0 20 chr9 47091685 47091734 -76984438 - L4 LINE RTE 0 2029 1982 1 944 244 48 23 23 chr9 47092755 47092798 -76983374 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 944 275 327 9 73 chr9 47092847 47092956 -76983216 - ID_B1 SINE B4 -28 196 95 1 944 240 328 102 42 chr9 47092994 47093112 -76983060 + MIRb SINE MIR 21 151 -117 1 944 506 293 126 58 chr9 47093803 47094064 -76982108 + B4A SINE B4 8 286 -6 1 944 507 86 57 0 chr9 47094077 47094182 -76981990 + (CAGA)n Simple_repeat Simple_repeat 2 112 0 1 944 380 97 0 16 chr9 47094184 47094247 -76981925 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 1 944 339 281 34 0 chr9 47095742 47095829 -76980343 + B1F SINE Alu 5 94 -55 1 944 2036 129 135 3 chr9 47095829 47096170 -76980002 + ORR1B1 LTR MaLR 1 386 -8 1 944 259 65 21 21 chr9 47096201 47096248 -76979924 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1 944 563 271 14 14 chr9 47097510 47097656 -76978516 - RSINE1 SINE B4 -17 148 3 1 944 357 319 40 95 chr9 47098964 47099257 -76976915 + ORR1E LTR MaLR 79 372 -12 1 944 267 257 120 82 chr9 47099463 47099698 -76976474 + Tigger16a DNA Tigger 751 932 -1 1 944 686 253 161 25 chr9 47100306 47100624 -76975548 + MLT1B LTR MaLR 29 390 0 1 944 872 278 11 0 chr9 47101317 47101504 -76974668 - B4A SINE B4 -103 189 1 1 944 304 273 128 34 chr9 47101756 47101904 -76974268 - MIRb SINE MIR -42 226 65 1 944 450 238 112 24 chr9 47102340 47102465 -76973707 - B1F1 SINE Alu -13 136 1 1 944 890 216 68 5 chr9 47102465 47102544 -76973628 - ID_B1 SINE B4 -133 91 1 1 944 1660 262 41 45 chr9 47103845 47104313 -76971859 + RCHARR1 DNA MER1_type 4 469 -505 1 944 899 254 65 5 chr9 47104310 47104524 -76971648 + RCHARR1 DNA MER1_type 748 974 0 1 944 583 271 8 0 chr9 47104657 47104786 -76971386 + B3 SINE B2 1 130 -86 1 944 264 77 0 0 chr9 47105497 47105536 -76970636 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 944 519 163 26 26 chr9 47106513 47106592 -76969580 + polypyrimidine Low_complexity Low_complexity 76 155 0 1 944 1620 19 0 0 chr9 47106592 47107132 -76969040 + (TTCTCC)n Simple_repeat Simple_repeat 1 540 0 1 944 519 163 26 26 chr9 47107132 47107177 -76968995 + polypyrimidine Low_complexity Low_complexity 30 75 0 1 944 3581 15 2 0 chr9 47107177 47107572 -76968600 + MTA_Mm LTR MaLR 1 396 0 1 944 519 163 26 26 chr9 47107572 47107595 -76968577 + polypyrimidine Low_complexity Low_complexity 8 29 0 1 944 1130 228 14 0 chr9 47107600 47107815 -76968357 - ID_B1 SINE B4 -1 223 6 1 944 184 328 16 0 chr9 47108475 47108536 -76967636 - L3b LINE CR1 -131 351 290 1 944 786 363 24 47 chr9 47108741 47109123 -76967049 + L4 LINE RTE 1165 1537 -492 1 944 212 224 26 26 chr9 47109258 47109336 -76966836 + CT-rich Low_complexity Low_complexity 2 79 0 1 944 207 245 102 0 chr9 47109723 47109772 -76966400 + L3 LINE CR1 3493 3546 -943 1 944 1106 27 20 39 chr9 47110047 47110200 -76965972 - L1_Mus1 LINE L1 0 6567 6418 1 944 1418 23 0 11 chr9 47110200 47110374 -76965798 + L1_Mus1 LINE L1 6212 6383 -184 1 944 660 241 0 29 chr9 47110582 47110719 -76965453 + B1F SINE Alu 9 141 -8 1 944 192 250 292 11 chr9 47110847 47110936 -76965236 + MIRb SINE MIR 134 247 -21 1 944 329 327 115 29 chr9 47112305 47112617 -76963555 + L1MD LINE L1 5039 5377 -769 1 944 686 278 5 55 chr9 47112708 47112910 -76963262 + B3A SINE B2 1 192 -6 1 944 276 338 38 0 chr9 47112979 47113139 -76963033 + L1ME1 LINE L1 5516 5681 -498 1 944 603 261 63 0 chr9 47113384 47113591 -76962581 + L1ME1 LINE L1 5781 6000 -179 1 944 300 53 0 0 chr9 47114132 47114170 -76962002 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 944 225 238 32 0 chr9 47114170 47114233 -76961939 - tRNA-Ala-GCA tRNA tRNA -9 66 2 1 944 508 309 102 12 chr9 47114748 47114994 -76961178 + L3 LINE CR1 4077 4344 -145 1 944 186 43 0 0 chr9 47116360 47116383 -76959789 + (CAGC)n Simple_repeat Simple_repeat 4 26 0 1 944 1459 57 10 5 chr9 47117450 47117643 -76958529 + B2_Mm2 SINE B2 2 195 0 1 944 1940 178 33 25 chr9 47118069 47118437 -76957735 + ORR1C1 LTR MaLR 8 378 0 1 944 1444 176 55 22 chr9 47118451 47118724 -76957448 - ORR1B1 LTR MaLR -72 322 41 1 944 1053 80 0 0 chr9 47118737 47118874 -76957298 + B1_Mus1 SINE Alu 12 148 0 1 944 225 288 62 78 chr9 47118979 47119107 -76957065 + MIRb SINE MIR 91 216 -52 1 944 240 35 0 0 chr9 47120398 47120427 -76955745 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 944 327 25 0 0 chr9 47120427 47120466 -76955706 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 944 548 240 6 0 chr9 47120483 47120662 -76955510 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 944 455 223 11 28 chr9 47120634 47120814 -76955358 + (TATG)n Simple_repeat Simple_repeat 4 180 0 1 944 608 228 6 0 chr9 47120828 47120999 -76955173 + (TG)n Simple_repeat Simple_repeat 1 172 0 1 944 204 130 42 42 chr9 47121834 47121882 -76954290 + G-rich Low_complexity Low_complexity 5 52 0 1 944 189 0 0 0 chr9 47123162 47123183 -76952989 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 944 221 280 129 10 chr9 47123609 47123710 -76952462 - MIRc SINE MIR -130 138 26 1 944 475 185 23 0 chr9 47124003 47124176 -76951996 + (TCTG)n Simple_repeat Simple_repeat 2 178 0 1 944 380 22 0 0 chr9 47124177 47124222 -76951950 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 944 696 254 85 23 chr9 47124262 47124520 -76951652 - B4A SINE B4 -18 274 1 1 944 407 329 139 45 chr9 47124777 47124995 -76951177 - L1ME3A LINE L1 -257 5916 5679 1 944 363 44 0 0 chr9 47124995 47125040 -76951132 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 944 407 329 139 45 chr9 47125040 47125108 -76951064 - L1ME3A LINE L1 -495 5678 5603 1 944 341 47 30 30 chr9 47125242 47125308 -76950864 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 944 486 306 120 18 chr9 47125344 47125827 -76950345 - L1ME3A LINE L1 -639 5534 4993 1 944 653 268 0 32 chr9 47125870 47126024 -76950148 + B1F SINE Alu 1 149 0 1 944 302 281 124 41 chr9 47126040 47126185 -76949987 - L1ME3A LINE L1 -1213 4933 4777 1 944 949 235 43 30 chr9 47126377 47126726 -76949446 + ORR1E LTR MaLR 2 346 -24 1 944 271 323 141 57 chr9 47126838 47127015 -76949157 - ORR1E LTR MaLR -135 224 33 1 944 1274 136 21 76 chr9 47127055 47127293 -76948879 + URR1B DNA MER1_type 1 225 0 2 944 995 189 20 20 chr9 47127487 47127687 -76948485 + RMER13B LTR ERVK 709 908 0 2 944 1677 228 16 8 chr9 47127796 47128167 -76948005 - ORR1D1 LTR MaLR 0 374 1 2 944 421 329 1 16 chr9 47128275 47128438 -76947734 + MIR SINE MIR 7 167 -95 2 944 2443 127 29 105 chr9 47128602 47128707 -76947465 - MTC LTR MaLR 0 421 353 2 944 968 98 0 16 chr9 47128707 47128959 -76947213 + (TG)n Simple_repeat Simple_repeat 1 247 0 2 944 2443 127 29 105 chr9 47128959 47129305 -76946867 - MTC LTR MaLR -69 352 1 2 944 1057 264 25 39 chr9 47129960 47130244 -76945928 - B4 SINE B4 -12 280 1 2 944 287 128 0 0 chr9 47131524 47131563 -76944609 - URR1B DNA MER1_type -186 39 1 2 944 208 324 28 28 chr9 47132174 47132282 -76943890 + C-rich Low_complexity Low_complexity 4 111 0 2 944 1003 279 77 37 chr9 47132716 47133095 -76943077 + Charlie5 DNA MER1_type 13 406 -2218 2 944 382 146 48 12 chr9 47133089 47133172 -76943000 + Charlie5 DNA MER1_type 2535 2620 -4 2 944 861 246 135 4 chr9 47133271 47133508 -76942664 + B4 SINE B4 1 268 -24 2 944 211 50 75 0 chr9 47133508 47133548 -76942624 + (CATA)n Simple_repeat Simple_repeat 3 45 0 2 944 371 288 99 29 chr9 47133688 47133860 -76942312 + MIRb SINE MIR 83 266 -2 2 944 1080 281 89 10 chr9 47134185 47134487 -76941685 + MLT1A0 LTR MaLR 6 331 -34 2 944 3164 29 70 0 chr9 47135287 47135671 -76940501 + IAPLTR2a LTR ERVK 1 411 0 2 944 475 307 30 30 chr9 47135709 47135877 -76940295 + MLT1J LTR MaLR 10 177 -335 2 944 26 0 0 0 chr9 47136966 47136992 -76939180 + AT_rich Low_complexity Low_complexity 1 26 0 2 944 423 0 0 0 chr9 47137326 47137373 -76938799 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 944 602 286 12 18 chr9 47137759 47137923 -76938249 - RSINE1 SINE B4 0 165 3 2 944 1078 202 14 14 chr9 47138070 47138286 -76937886 + B3 SINE B2 1 216 0 2 944 311 280 85 58 chr9 47138295 47138519 -76937653 - L1M5 LINE L1 -437 5803 5574 2 944 1642 245 68 20 chr9 47138838 47139238 -76936934 + MTD LTR MaLR 1 419 0 2 944 210 71 0 0 chr9 47139373 47139401 -76936771 + (TCC)n Simple_repeat Simple_repeat 3 30 0 2 944 342 0 0 0 chr9 47139504 47139542 -76936630 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 944 387 0 0 0 chr9 47139542 47139584 -76936588 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 944 228 176 20 0 chr9 47139591 47139642 -76936530 + (CAGA)n Simple_repeat Simple_repeat 1 52 0 2 944 201 196 0 0 chr9 47140772 47140818 -76935354 + C-rich Low_complexity Low_complexity 4 49 0 2 944 432 0 0 0 chr9 47141531 47141579 -76934593 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 944 216 368 105 0 chr9 47141684 47141798 -76934374 + MIR SINE MIR 109 234 -28 2 944 250 353 19 68 chr9 47142276 47142437 -76933735 + MIRb SINE MIR 116 268 0 2 944 537 110 0 0 chr9 47143167 47143267 -76932905 + (TC)n Simple_repeat Simple_repeat 2 101 0 2 944 245 292 22 33 chr9 47144183 47144275 -76931897 + L3b LINE CR1 174 264 -218 2 944 853 144 214 11 chr9 47144806 47144988 -76931184 - URR1B DNA MER1_type -6 219 1 2 944 498 333 104 20 chr9 47144999 47145250 -76930922 - ORR1E LTR MaLR -87 272 1 2 944 707 312 35 112 chr9 47145418 47146287 -76929885 + L1MB2 LINE L1 5364 6166 -5 2 944 651 315 44 35 chr9 47147758 47147985 -76928187 - B4A SINE B4 -62 230 2 2 944 578 271 109 35 chr9 47148223 47148323 -76927849 - L1MA7 LINE L1 -252 6039 5923 2 944 342 0 0 0 chr9 47148323 47148361 -76927811 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 944 578 271 109 35 chr9 47148361 47148600 -76927572 - L1MA7 LINE L1 -369 5922 5676 2 944 396 40 0 0 chr9 47148676 47148726 -76927446 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 944 471 305 54 30 chr9 47148827 47149030 -76927142 + MER3 DNA MER1_type 2 209 0 2 944 789 73 0 0 chr9 47150612 47150721 -76925451 + (TG)n Simple_repeat Simple_repeat 1 109 0 2 944 1087 254 73 0 chr9 47150722 47150970 -76925202 - B4 SINE B4 -23 269 4 2 944 336 102 0 0 chr9 47151343 47151392 -76924780 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 944 1062 112 0 0 chr9 47151418 47151561 -76924611 - B1_Mus1 SINE Alu -5 143 1 2 944 577 324 123 31 chr9 47153144 47153469 -76922703 - ORR1E LTR MaLR -1 358 4 2 944 307 323 95 29 chr9 47153851 47153988 -76922184 - MIR SINE MIR -114 148 3 2 944 291 203 0 0 chr9 47154047 47154111 -76922061 + (TAGGG)n Simple_repeat Simple_repeat 1 64 0 2 944 243 359 92 0 chr9 47154114 47154256 -76921916 - MLT1I LTR MaLR -12 399 245 2 944 574 365 49 57 chr9 47154515 47155110 -76921062 + L2c LINE L2 2335 2924 -495 2 944 392 197 79 0 chr9 47155291 47155367 -76920805 + MLT1D LTR MaLR 392 473 -32 2 944 756 290 126 56 chr9 47155933 47156361 -76919811 - MLT1D LTR MaLR -32 473 16 2 944 199 316 22 127 chr9 47156596 47156730 -76919442 + MIRc SINE MIR 47 166 -102 2 944 492 345 28 59 chr9 47156886 47157206 -76918966 + L2c LINE L2 3070 3379 -8 2 944 238 349 0 30 chr9 47159454 47159587 -76916585 + CT-rich Low_complexity Low_complexity 4 132 0 2 944 308 341 8 23 chr9 47159767 47159896 -76916276 + MIRb SINE MIR 2 128 -140 2 944 276 321 66 0 chr9 47163802 47163908 -76912264 - PB1D10 SINE Alu -1 116 4 2 944 354 311 92 28 chr9 47164663 47164873 -76911299 + MLT2B5 LTR ERVL 20 356 -361 2 944 225 250 50 89 chr9 47165327 47165428 -76910744 + Kanga1a DNA Tc2 117 213 -541 2 944 525 305 70 41 chr9 47165797 47166040 -76910132 - MIRb SINE MIR -13 255 6 2 944 379 315 23 8 chr9 47167439 47167570 -76908602 + B1F SINE Alu 3 135 -14 2 944 235 299 67 67 chr9 47167766 47167870 -76908302 + RMER15 LTR ERVL 458 561 -14 2 944 249 327 73 18 chr9 47167998 47168107 -76908065 - MIR SINE MIR -4 258 144 2 944 1020 201 122 39 chr9 47168118 47168392 -76907780 - MTE2b LTR MaLR -72 307 1 2 944 200 303 111 11 chr9 47168750 47168840 -76907332 + MIRb SINE MIR 92 190 -78 2 944 229 350 83 55 chr9 47169904 47170049 -76906123 - MER5B DNA MER1_type -21 157 9 2 944 268 255 0 0 chr9 47170197 47170248 -76905924 - ID_B1 SINE B4 -64 160 110 2 944 326 186 15 17 chr9 47170231 47170308 -76905864 - ID4_ SINE ID -72 80 5 2 944 279 0 0 0 chr9 47171622 47171653 -76904519 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 944 229 212 79 45 chr9 47171708 47171797 -76904375 - MIR3 SINE MIR -104 104 13 2 944 233 57 0 28 chr9 47171888 47171924 -76904248 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2 944 339 25 0 0 chr9 47172163 47172203 -76903969 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 944 258 292 175 9 chr9 47172697 47172811 -76903361 + MIR3 SINE MIR 71 203 -5 2 944 381 22 0 0 chr9 47173948 47173994 -76902178 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 944 1338 243 95 0 chr9 47174215 47174553 -76901619 + ORR1D2 LTR MaLR 1 370 0 2 944 204 361 124 16 chr9 47174607 47174681 -76901491 + MIRb SINE MIR 51 137 -131 2 944 264 77 0 0 chr9 47174681 47174720 -76901452 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 2 944 204 361 124 16 chr9 47174720 47174831 -76901341 + MIRb SINE MIR 138 255 -13 2 944 270 0 0 0 chr9 47174919 47174949 -76901223 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 944 324 0 0 0 chr9 47174949 47174984 -76901188 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 944 426 204 91 10 chr9 47175103 47175202 -76900970 - PB1D10 SINE Alu 0 117 11 2 944 235 299 70 20 chr9 47175366 47175471 -76900701 - L2c LINE L2 -30 3357 3235 2 944 22 35 0 0 chr9 47176330 47176359 -76899813 + GC_rich Low_complexity Low_complexity 1 29 0 2 944 7317 74 17 15 chr9 47177767 47179533 -76896639 + L1_Mus2 LINE L1 4804 6566 0 2 944 26 30 0 0 chr9 47179536 47179569 -76896603 + AT_rich Low_complexity Low_complexity 1 33 0 2 944 203 299 11 65 chr9 47180965 47181058 -76895114 - MIR SINE MIR -91 117 30 2 944 494 240 122 7 chr9 47181372 47181519 -76894653 - ORR1D2 LTR MaLR 0 370 207 2 944 199 342 85 40 chr9 47181534 47181735 -76894437 + L2a LINE L2 3199 3408 -18 2 944 319 217 0 4 chr9 47181743 47181814 -76894358 - ORR1D1 LTR MaLR -1 369 301 2 944 875 170 52 0 chr9 47181815 47181950 -76894222 + B1_Mur2 SINE Alu 2 143 -6 2 944 302 314 95 54 chr9 47181950 47182098 -76894074 + HAL1-3A_ME LINE L1 2286 2439 -419 2 944 1159 231 17 114 chr9 47182102 47182397 -76893775 - ORR1D1 LTR MaLR -56 318 60 2 944 2285 130 72 36 chr9 47182397 47182787 -76893385 - RLTR44A LTR ERVK 0 405 2 2 944 1159 231 17 114 chr9 47182787 47182843 -76893329 - ORR1D1 LTR MaLR -315 59 1 2 944 471 291 0 0 chr9 47183195 47183312 -76892860 - PB1D10 SINE Alu 0 117 1 2 944 838 257 151 11 chr9 47184078 47184112 -76892060 - RMER10A LTR ERVL -24 418 385 2 944 375 23 0 0 chr9 47184112 47184156 -76892016 + (TTG)n Simple_repeat Simple_repeat 1 44 0 2 944 838 257 151 11 chr9 47184156 47184268 -76891904 - RMER10A LTR ERVL -58 384 259 2 944 815 62 0 17 chr9 47184268 47184383 -76891789 + (GGGGA)n Simple_repeat Simple_repeat 4 116 0 2 944 838 257 151 11 chr9 47184383 47184593 -76891579 - RMER10A LTR ERVL -184 258 14 2 944 348 24 0 0 chr9 47184732 47184773 -76891399 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 944 387 0 0 0 chr9 47184773 47184815 -76891357 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 944 263 338 60 23 chr9 47184967 47185100 -76891072 - MIRc SINE MIR -66 202 64 2 944 1893 171 132 47 chr9 47185443 47185830 -76890342 + MTC LTR MaLR 2 421 0 2 945 240 272 19 64 chr9 47186086 47186196 -76889976 + L2c LINE L2 3043 3158 -229 2 945 1188 256 7 28 chr9 47186288 47186574 -76889598 + B4A SINE B4 2 281 -11 2 945 1107 287 31 23 chr9 47186855 47187204 -76888968 + ORR1E LTR MaLR 1 352 -7 2 945 596 273 145 19 chr9 47187212 47187566 -76888606 + L1MB3 LINE L1 5789 6179 -4 3 945 396 40 0 0 chr9 47188337 47188387 -76887785 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 945 234 300 125 62 chr9 47189271 47189463 -76886709 + MT2B2 LTR ERVL 37 240 -344 3 945 432 232 19 57 chr9 47189399 47189504 -76886668 + PB1D10 SINE Alu 17 117 0 3 945 232 42 20 78 chr9 47189504 47189555 -76886617 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 3 945 885 258 66 16 chr9 47189561 47189817 -76886355 + B4 SINE B4 5 273 -19 3 945 801 121 0 0 chr9 47189911 47190035 -76886137 + (GGAA)n Simple_repeat Simple_repeat 1 124 0 3 945 1638 26 0 16 chr9 47190232 47190424 -76885748 - B2_Mm1a SINE B2 -4 189 1 3 945 743 243 6 24 chr9 47190576 47190745 -76885427 + ID_B1 SINE B4 76 246 -46 3 945 309 109 0 0 chr9 47190747 47190793 -76885379 + (GGA)n Simple_repeat Simple_repeat 1 46 0 3 945 206 311 76 57 chr9 47190862 47191019 -76885153 + MIR SINE MIR 86 245 -17 3 945 337 66 16 16 chr9 47191531 47191593 -76884579 + (GTTTG)n Simple_repeat Simple_repeat 2 63 0 3 945 907 171 166 0 chr9 47191674 47191867 -76884305 + URR1B DNA MER1_type 1 225 0 3 945 192 352 36 45 chr9 47193741 47193851 -76882321 + L2b LINE L2 3238 3346 -29 3 945 298 305 26 34 chr9 47196580 47196709 -76879463 + L2c LINE L2 3238 3369 -6 3 945 3806 217 39 79 chr9 47197519 47198841 -76877331 + RMER1A Other Other 1 731 -299 3 945 1158 68 0 13 chr9 47198841 47198980 -76877192 + B1_Mus2 SINE Alu 1 139 -8 3 945 224 30 30 0 chr9 47198980 47199013 -76877159 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 945 3806 176 28 51 chr9 47199022 47199346 -76876826 + RMER1A Other Other 732 1029 -1 3 945 192 394 0 0 chr9 47199649 47199720 -76876452 + MIRb SINE MIR 175 245 -23 3 945 212 374 35 9 chr9 47201082 47201198 -76874974 - L3b LINE CR1 -169 313 195 3 945 203 0 0 36 chr9 47201415 47201443 -76874729 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 3 945 346 294 0 29 chr9 47202485 47202590 -76873582 + PB1D10 SINE Alu 1 102 -15 3 945 329 273 0 29 chr9 47202592 47202694 -76873478 + GA-rich Low_complexity Low_complexity 2 100 0 3 945 302 354 0 0 chr9 47203755 47203837 -76872335 - ID4_ SINE ID 0 83 2 3 945 445 232 93 0 chr9 47203964 47204068 -76872104 - B1F SINE Alu -24 125 13 3 945 467 33 0 16 chr9 47204384 47204446 -76871726 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 945 261 118 0 0 chr9 47204518 47204569 -76871603 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 3 945 839 249 166 8 chr9 47204574 47204809 -76871363 - B4 SINE B4 -10 282 11 3 945 387 0 0 0 chr9 47205271 47205314 -76870858 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 945 228 67 0 0 chr9 47206578 47206608 -76869564 + (TTA)n Simple_repeat Simple_repeat 1 30 0 3 945 226 333 83 42 chr9 47207106 47207322 -76868850 + MIRb SINE MIR 15 239 -29 3 945 243 0 0 0 chr9 47207436 47207463 -76868709 + (ATG)n Simple_repeat Simple_repeat 3 29 0 3 945 273 57 0 0 chr9 47207461 47207496 -76868676 + (GGA)n Simple_repeat Simple_repeat 2 36 0 3 945 723 296 29 95 chr9 47207977 47208283 -76867889 + B4A SINE B4 1 286 -6 3 945 261 83 0 0 chr9 47208325 47208361 -76867811 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 3 945 3164 58 13 5 chr9 47209103 47209500 -76866672 - MTB LTR MaLR 0 400 1 3 945 189 0 0 0 chr9 47210605 47210626 -76865546 + (GTTTG)n Simple_repeat Simple_repeat 3 23 0 3 945 701 230 36 0 chr9 47210626 47210765 -76865407 - B1_Mur2 SINE Alu -4 145 2 3 945 212 350 105 42 chr9 47211139 47211282 -76864890 - MIRc SINE MIR -27 241 90 3 945 403 285 39 13 chr9 47212102 47212255 -76863917 - RMER15 LTR ERVL -68 507 351 3 945 251 203 0 14 chr9 47212418 47212488 -76863684 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 945 213 318 15 29 chr9 47212559 47212627 -76863545 - ID4_ SINE ID -12 71 5 3 945 707 291 14 28 chr9 47212630 47212846 -76863326 - B4A SINE B4 -79 213 1 3 945 186 195 73 0 chr9 47213772 47213813 -76862359 - MIR3 SINE MIR -151 57 14 3 945 394 280 0 39 chr9 47214056 47214160 -76862012 + PB1D10 SINE Alu 17 116 -1 3 945 378 0 0 0 chr9 47215665 47215707 -76860465 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 945 242 295 22 33 chr9 47215774 47215865 -76860307 - B4 SINE B4 -73 219 130 3 945 489 34 0 0 chr9 47215876 47215935 -76860237 + (TTC)n Simple_repeat Simple_repeat 3 61 0 3 945 189 0 0 0 chr9 47215935 47215956 -76860216 + (TC)n Simple_repeat Simple_repeat 1 21 0 3 945 599 262 14 0 chr9 47215958 47216099 -76860073 - B4A SINE B4 -148 144 2 3 945 184 302 67 44 chr9 47217034 47217124 -76859048 + MIRc SINE MIR 115 206 -62 3 945 387 274 154 0 chr9 47217471 47217588 -76858584 + ID_B1 SINE B4 79 213 -11 3 945 222 37 0 0 chr9 47217588 47217615 -76858557 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 945 730 279 41 8 chr9 47217626 47217893 -76858279 + L1MB3 LINE L1 5906 6181 -2 3 945 473 250 73 40 chr9 47217965 47218115 -76858057 + RSINE1 SINE B4 5 159 -6 3 945 409 318 288 3 chr9 47219232 47219604 -76856568 + LTR50 LTR ERVL 29 506 -289 3 945 471 285 144 11 chr9 47220508 47220682 -76855490 + MIRc SINE MIR 69 265 -3 3 945 230 254 18 0 chr9 47221415 47221470 -76854702 + (CATA)n Simple_repeat Simple_repeat 3 58 0 3 945 479 243 46 37 chr9 47221601 47221819 -76854353 - L1ME4a LINE L1 -30 6094 5875 3 945 301 331 67 30 chr9 47221956 47222090 -76854082 - L1ME4a LINE L1 -440 5684 5546 3 945 272 371 8 16 chr9 47222271 47222397 -76853775 + MIR SINE MIR 83 207 -55 3 945 523 304 68 0 chr9 47222527 47222688 -76853484 + ID_B1 SINE B4 2 173 -51 3 945 414 388 56 7 chr9 47223809 47224079 -76852093 - L2a LINE L2 -38 3388 3106 3 945 354 328 211 12 chr9 47224097 47224353 -76851819 - L2a LINE L2 -339 3080 2774 3 945 461 296 71 75 chr9 47224370 47224622 -76851550 - MIRb SINE MIR -9 259 9 3 945 247 291 195 52 chr9 47224648 47224858 -76851314 - L2a LINE L2 -705 2714 2475 3 945 225 0 0 0 chr9 47225668 47225693 -76850479 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 945 678 327 101 35 chr9 47226401 47226591 -76849581 + B4 SINE B4 13 204 -88 3 945 524 65 13 0 chr9 47226591 47226668 -76849504 + (CATA)n Simple_repeat Simple_repeat 4 81 0 3 945 678 327 101 35 chr9 47226668 47226734 -76849438 + B4 SINE B4 205 285 -7 3 945 333 0 0 0 chr9 47226781 47226818 -76849354 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 945 217 242 123 46 chr9 47227320 47227385 -76848787 + L2 LINE L2 2511 2580 -839 3 945 1133 117 12 12 chr9 47228480 47228495 -76847677 - B2_Mm2 SINE B2 -22 173 159 3 945 270 0 0 0 chr9 47228495 47228525 -76847647 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3 945 1133 117 12 12 chr9 47228525 47228682 -76847490 - B2_Mm2 SINE B2 -37 158 2 3 945 684 280 78 64 chr9 47229365 47229647 -76846525 - B4A SINE B4 -1 291 6 3 945 24 0 0 0 chr9 47229675 47229699 -76846473 + AT_rich Low_complexity Low_complexity 1 24 0 3 945 336 250 0 0 chr9 47229714 47229778 -76846394 - ID4 SINE ID -17 66 3 3 945 231 315 58 117 chr9 47229821 47229862 -76846310 - B4A SINE B4 -31 261 166 3 945 454 252 22 37 chr9 47229862 47229998 -76846174 - B1F1 SINE Alu -2 147 14 3 945 231 315 58 117 chr9 47229998 47230044 -76846128 - B4A SINE B4 -31 165 52 3 945 231 36 0 0 chr9 47230804 47230832 -76845340 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 945 434 75 15 0 chr9 47231139 47231206 -76844966 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 945 233 376 88 9 chr9 47232224 47232439 -76843733 + MER113A DNA MER1_type 6 237 -77 3 945 1317 291 139 28 chr9 47232560 47233406 -76842766 - L1ME2z LINE L1 0 6444 5515 3 945 359 193 0 0 chr9 47233409 47233466 -76842706 + B4A SINE B4 3 59 -233 3 945 767 254 10 50 chr9 47233722 47233921 -76842251 + B4A SINE B4 102 292 0 3 945 729 314 36 52 chr9 47234043 47234604 -76841568 - L1ME2z LINE L1 -751 5395 4844 3 945 1448 69 26 5 chr9 47235068 47235258 -76840914 + B2_Mm2 SINE B2 1 194 -1 3 945 392 166 37 15 chr9 47235498 47235633 -76840539 + GA-rich Low_complexity Low_complexity 1 138 0 3 945 509 321 71 28 chr9 47235633 47235886 -76840286 + MIRc SINE MIR 3 266 -2 3 945 225 65 0 0 chr9 47236797 47236828 -76839344 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 945 227 310 119 31 chr9 47236846 47237006 -76839166 + L2b LINE L2 2990 3163 -212 3 945 306 0 0 0 chr9 47237076 47237110 -76839062 + (A)n Simple_repeat Simple_repeat 1 34 0 3 945 246 213 131 0 chr9 47237351 47237412 -76838760 + Tigger5 DNA MER2_type 95 163 -2243 3 945 264 264 69 0 chr9 47237462 47237549 -76838623 + Tigger5 DNA MER2_type 2288 2380 -26 3 945 534 300 65 64 chr9 47237767 47238072 -76838100 + B4 SINE B4 1 269 -23 3 945 1022 89 24 0 chr9 47238091 47238260 -76837912 + (GGGAGA)n Simple_repeat Simple_repeat 3 175 0 3 945 461 260 98 38 chr9 47238557 47238741 -76837431 + L3b LINE CR1 162 356 -126 3 945 185 294 145 14 chr9 47238799 47238868 -76837304 - L2c LINE L2 -9 3378 3301 3 945 715 298 88 34 chr9 47238987 47239282 -76836890 - RMER15 LTR ERVL -14 561 251 3 945 375 301 120 38 chr9 47239592 47239775 -76836397 - MLT1D LTR MaLR -150 355 158 3 945 378 317 102 47 chr9 47240223 47240438 -76835734 - HAL1 LINE L1 0 2507 2281 3 945 304 296 71 38 chr9 47241187 47241370 -76834802 - HAL1 LINE L1 -295 2212 2024 3 945 678 195 16 0 chr9 47241665 47241793 -76834379 - B1_Mur4 SINE Alu -16 134 5 3 945 718 171 23 6 chr9 47242291 47242468 -76833704 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 945 547 274 101 54 chr9 47242653 47242931 -76833241 + B4A SINE B4 2 292 0 3 945 21 0 0 0 chr9 47242968 47242989 -76833183 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 564 194 0 53 chr9 47243627 47243817 -76832355 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 945 189 0 0 0 chr9 47243988 47244009 -76832163 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 945 1236 164 22 14 chr9 47244313 47244536 -76831636 + URR1B DNA MER1_type 1 225 0 3 945 477 312 30 24 chr9 47244675 47244839 -76831333 + RSINE1 SINE B4 1 165 0 4 945 217 150 0 24 chr9 47244841 47244882 -76831290 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 945 268 163 20 0 chr9 47245159 47245208 -76830964 + L2a LINE L2 3373 3422 -4 4 945 916 244 56 37 chr9 47245429 47245697 -76830475 + B4A SINE B4 2 274 -18 4 945 299 96 0 19 chr9 47245701 47245754 -76830418 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 945 580 171 269 18 chr9 47246064 47246231 -76829941 + B3 SINE B2 5 213 -3 4 945 210 91 0 0 chr9 47246536 47246569 -76829603 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 945 209 265 0 0 chr9 47246628 47246677 -76829495 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 945 246 81 0 0 chr9 47247055 47247092 -76829080 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 945 791 250 143 27 chr9 47247111 47247370 -76828802 - B4A SINE B4 -1 291 3 4 945 468 0 0 0 chr9 47247436 47247488 -76828684 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 945 351 0 0 0 chr9 47247488 47247526 -76828646 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 945 432 97 0 0 chr9 47248226 47248288 -76827884 + (CTTTG)n Simple_repeat Simple_repeat 2 63 0 4 945 214 207 37 0 chr9 47248517 47248599 -76827573 + CT-rich Low_complexity Low_complexity 6 90 0 4 945 855 266 111 77 chr9 47249444 47249995 -76826177 + L1MB8 LINE L1 5481 6056 -122 4 945 285 235 8 32 chr9 47250377 47250500 -76825672 + CT-rich Low_complexity Low_complexity 1 120 0 4 945 921 297 60 44 chr9 47250826 47251329 -76824843 - L1MA4A LINE L1 -380 5923 5413 4 945 280 193 26 60 chr9 47251550 47251815 -76824357 + (TATATG)n Simple_repeat Simple_repeat 1 255 0 4 945 358 243 33 39 chr9 47251741 47251921 -76824251 + (TA)n Simple_repeat Simple_repeat 1 179 0 4 945 426 238 17 52 chr9 47251842 47252015 -76824157 + (TATATG)n Simple_repeat Simple_repeat 5 171 0 4 945 265 321 52 35 chr9 47252117 47252233 -76823939 - Tigger9b DNA MER2_type -417 207 90 4 945 588 247 121 25 chr9 47252403 47252602 -76823570 + MER20 DNA MER1_type 1 218 -1 4 945 227 31 31 0 chr9 47252836 47252868 -76823304 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 4 945 483 361 69 0 chr9 47253528 47253730 -76822442 + LTR79 LTR ERVL 241 456 -71 4 945 206 293 0 79 chr9 47253892 47253955 -76822217 + L2c LINE L2 3283 3340 -47 4 945 31 36 0 18 chr9 47253985 47254004 -76822168 + AT_rich Low_complexity Low_complexity 1 19 0 4 945 812 175 253 24 chr9 47254004 47254174 -76821998 + B3 SINE B2 1 209 -7 4 945 31 36 0 18 chr9 47254174 47254210 -76821962 + AT_rich Low_complexity Low_complexity 1 36 0 4 945 429 296 150 6 chr9 47254244 47254417 -76821755 + MamGypLTR1a LTR Gypsy 581 778 -6 4 945 380 187 120 0 chr9 47254918 47254993 -76821179 + B4A SINE B4 3 86 -206 4 945 640 87 9 19 chr9 47255849 47255955 -76820217 + (TTCC)n Simple_repeat Simple_repeat 1 105 0 4 945 355 279 0 12 chr9 47256493 47256601 -76819571 - ID4 SINE ID -44 108 5 4 945 831 248 190 22 chr9 47256681 47257002 -76819170 - MTEa LTR MaLR -4 375 1 4 945 508 152 10 29 chr9 47257176 47257278 -76818894 + RLTR15 LTR ERVK 33 132 -227 4 945 1948 168 53 6 chr9 47258069 47258411 -76817761 - ORR1B2 LTR MaLR -9 358 1 4 945 714 260 99 0 chr9 47258694 47258886 -76817286 - B3 SINE B2 -5 211 1 4 945 944 268 56 17 chr9 47258938 47259170 -76817002 + B4A SINE B4 8 248 -44 4 945 854 194 0 0 chr9 47259213 47259357 -76816815 + B1_Mus2 SINE Alu 3 146 -1 4 945 1364 329 112 28 chr9 47259394 47260181 -76815991 - MER45B DNA Tip100 -167 873 21 4 945 198 0 0 0 chr9 47260491 47260513 -76815659 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 945 444 82 0 0 chr9 47260515 47260576 -76815596 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 945 234 0 0 0 chr9 47260849 47260875 -76815297 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 945 732 80 10 0 chr9 47260882 47260982 -76815190 - B1_Mus2 SINE Alu 0 147 47 4 945 303 205 63 74 chr9 47260916 47261011 -76815161 - MT2B LTR ERVL -337 264 171 4 945 249 266 0 102 chr9 47260939 47261027 -76815145 - 4.5SRNA scRNA scRNA -8 86 8 4 945 361 294 104 82 chr9 47261284 47261602 -76814570 - L1ME4a LINE L1 -6 6118 5794 4 945 239 284 54 0 chr9 47261819 47261893 -76814279 + ID4 SINE ID 3 80 -3 4 945 746 294 20 25 chr9 47261924 47262123 -76814049 + B3A SINE B2 1 198 0 4 945 1199 125 0 6 chr9 47262349 47262526 -76813646 + B2_Mm2 SINE B2 1 176 -19 4 945 432 0 0 0 chr9 47262526 47262574 -76813598 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 945 1026 0 0 0 chr9 47262574 47262688 -76813484 + (GGAAA)n Simple_repeat Simple_repeat 2 115 0 4 945 640 169 95 16 chr9 47262710 47262836 -76813336 + B1_Mus1 SINE Alu 14 149 0 4 945 206 157 41 41 chr9 47262836 47262909 -76813263 + (CAAAC)n Simple_repeat Simple_repeat 4 76 0 4 945 1362 106 16 0 chr9 47263309 47263498 -76812674 + B2_Mm2 SINE B2 1 192 -3 4 945 636 14 0 0 chr9 47263512 47263585 -76812587 + (GAGAA)n Simple_repeat Simple_repeat 3 75 0 4 945 1220 86 6 0 chr9 47263585 47263759 -76812413 + (GGAGA)n Simple_repeat Simple_repeat 3 178 0 4 945 332 43 22 0 chr9 47263759 47263805 -76812367 + (GGA)n Simple_repeat Simple_repeat 3 49 0 4 945 272 167 90 77 chr9 47264054 47264132 -76812040 + B3A SINE B2 1 79 -119 4 945 906 232 43 19 chr9 47264253 47264464 -76811708 + B3 SINE B2 1 216 0 4 945 607 246 98 5 chr9 47264550 47264734 -76811438 + MIR SINE MIR 37 237 -25 4 945 229 314 92 28 chr9 47265375 47265516 -76810656 + L2c LINE L2 3213 3362 -25 4 945 485 288 165 8 chr9 47266141 47266383 -76809789 - B4 SINE B4 -12 280 1 4 945 861 333 56 63 chr9 47269016 47269533 -76806639 + MLT2B3 LTR ERVL 1 515 -39 4 945 348 83 0 0 chr9 47269533 47269581 -76806591 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 945 351 0 0 0 chr9 47269581 47269619 -76806553 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 945 861 333 56 63 chr9 47269619 47269658 -76806514 + MLT2B3 LTR ERVL 516 553 -1 4 945 1313 233 104 18 chr9 47269722 47270059 -76806113 + ORR1D2 LTR MaLR 1 366 -4 4 945 798 270 148 44 chr9 47270075 47270393 -76805779 + ORR1E LTR MaLR 2 352 -7 4 945 221 175 35 17 chr9 47270533 47270573 -76805599 + polypyrimidine Low_complexity Low_complexity 20 61 0 4 945 949 82 214 0 chr9 47270573 47270732 -76805440 - B2_Mm2 SINE B2 -1 194 2 4 945 221 175 35 17 chr9 47270732 47270749 -76805423 + polypyrimidine Low_complexity Low_complexity 3 19 0 4 945 535 291 27 7 chr9 47271361 47271510 -76804662 - RSINE1 SINE B4 -11 154 3 4 945 6736 131 9 23 chr9 47271527 47272589 -76803583 - Lx LINE L1 -20 6634 5587 4 945 297 145 0 0 chr9 47273058 47273120 -76803052 + (T)n Simple_repeat Simple_repeat 1 62 0 4 945 1179 62 7 0 chr9 47273121 47273266 -76802906 - B1_Mus2 SINE Alu -1 146 1 4 945 209 365 136 21 chr9 47277174 47277314 -76798858 - L2b LINE L2 -1 3374 3219 4 945 312 48 0 0 chr9 47277961 47278003 -76798169 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 945 371 361 43 30 chr9 47278341 47278575 -76797597 + MIRb SINE MIR 32 268 0 4 945 346 268 230 9 chr9 47278612 47278842 -76797330 + MER46C DNA MER2_type 22 302 -36 4 945 468 0 0 0 chr9 47280527 47280579 -76795593 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 4 945 236 286 52 0 chr9 47280737 47280814 -76795358 - MIR3 SINE MIR -9 199 119 4 945 486 337 16 16 chr9 47284582 47284766 -76791406 - MIR SINE MIR -28 234 51 4 945 183 293 50 33 chr9 47285554 47285614 -76790558 + MER5B DNA MER1_type 52 112 -66 4 945 591 243 28 51 chr9 47288361 47288539 -76787633 - ORR1E LTR MaLR -184 175 2 4 945 586 200 0 43 chr9 47289233 47289421 -76786751 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 945 403 253 0 12 chr9 47289456 47289628 -76786544 + (TG)n Simple_repeat Simple_repeat 1 170 0 4 945 712 292 99 29 chr9 47289628 47289900 -76786272 - B4A SINE B4 0 292 2 4 945 181 211 35 126 chr9 47289939 47290026 -76786146 + L2a LINE L2 3279 3357 -69 4 945 304 266 108 25 chr9 47290075 47290233 -76785939 + L1ME4a LINE L1 5954 6124 0 4 945 518 360 92 53 chr9 47290300 47290792 -76785380 + L3 LINE CR1 3349 3859 -630 4 945 1017 120 12 12 chr9 47290954 47291123 -76785049 - B2_Mm2 SINE B2 -25 170 2 4 945 321 246 66 44 chr9 47291165 47291301 -76784871 - MER103 DNA DNA -16 150 12 4 945 2397 174 89 20 chr9 47292093 47292587 -76783585 + RLTR11A LTR ERVK 1 528 0 4 945 508 299 72 42 chr9 47293474 47293736 -76782436 + B4A SINE B4 5 274 -18 4 945 780 263 139 21 chr9 47296497 47296827 -76779345 - ORR1D2 LTR MaLR 0 370 2 4 945 341 230 11 44 chr9 47296967 47297058 -76779114 + RSINE1 SINE B4 49 136 -29 4 945 522 0 0 0 chr9 47297399 47297457 -76778715 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 945 426 318 105 12 chr9 47297489 47297661 -76778511 - B4A SINE B4 -21 271 84 4 945 207 183 250 14 chr9 47298316 47298388 -76777784 + L2a LINE L2 3316 3404 -22 4 945 318 375 97 34 chr9 47298562 47298860 -76777312 + MLT1J2 LTR MaLR 1 317 -131 4 945 530 285 0 8 chr9 47299351 47299482 -76776690 + B4A SINE B4 161 290 -2 4 945 270 143 0 20 chr9 47300604 47300654 -76775518 - MTC LTR MaLR -2 419 371 4 945 2307 91 0 43 chr9 47300658 47301003 -76775169 + L1_Mus4 LINE L1 6301 6630 -6 4 945 35056 62 4 1 chr9 47301013 47306187 -76769985 + L1Md_F3 LINE L1 441 5586 -297 5 945 8540 26 9 3 chr9 47306187 47307176 -76768996 + L1Md_F3 LINE L1 5587 6581 -3 5 945 1120 236 141 15 chr9 47307185 47307525 -76768647 - MTC LTR MaLR -38 383 1 4 945 611 293 9 81 chr9 47307570 47307793 -76768379 + B4 SINE B4 85 291 -1 5 945 625 304 55 31 chr9 47308572 47308885 -76767287 + L1MB4 LINE L1 5856 6174 -6 5 945 229 206 13 76 chr9 47308914 47308993 -76767179 + L1MB8 LINE L1 6102 6175 -3 5 945 222 323 52 31 chr9 47309858 47309954 -76766218 - MER5A DNA MER1_type -18 171 74 5 945 1200 253 79 13 chr9 47310004 47310065 -76766107 - MTD LTR MaLR 0 419 356 5 945 3247 21 33 20 chr9 47310065 47310456 -76765716 + MTA_Mm LTR MaLR 1 396 0 5 945 1200 253 79 13 chr9 47310456 47310787 -76765385 - MTD LTR MaLR -64 355 2 5 945 313 233 81 0 chr9 47310793 47310879 -76765293 + L1MB4 LINE L1 6018 6110 -70 5 945 196 172 17 17 chr9 47310893 47310952 -76765220 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 945 261 196 0 0 chr9 47311027 47311078 -76765094 + L1MB8 LINE L1 6103 6153 -25 5 945 1070 287 102 47 chr9 47311200 47311323 -76764849 - MER70A LTR ERVL -1 471 325 5 945 225 0 0 0 chr9 47311323 47311348 -76764824 + (TAG)n Simple_repeat Simple_repeat 1 25 0 5 945 1070 287 102 47 chr9 47311348 47311667 -76764505 - MER70A LTR ERVL -148 324 5 5 945 249 265 69 39 chr9 47312564 47312666 -76763506 + RSINE1 SINE B4 43 147 -18 5 945 582 15 0 0 chr9 47312681 47312748 -76763424 + (CTA)n Simple_repeat Simple_repeat 3 69 0 5 945 25 0 0 0 chr9 47315008 47315033 -76761139 + AT_rich Low_complexity Low_complexity 1 25 0 5 945 205 191 95 0 chr9 47315142 47315184 -76760988 + MIRc SINE MIR 68 113 -155 5 945 322 67 0 22 chr9 47315292 47315338 -76760834 - HAL1-3A_ME LINE L1 -838 2020 1976 5 945 511 189 302 19 chr9 47315374 47315579 -76760593 - B4 SINE B4 -3 289 27 5 946 414 0 0 0 chr9 47317166 47317212 -76758960 + (CAAAC)n Simple_repeat Simple_repeat 3 48 0 5 946 724 226 100 97 chr9 47317295 47317574 -76758598 + B4A SINE B4 5 284 -8 5 946 468 242 0 0 chr9 47318962 47319053 -76757119 + 5S rRNA rRNA 1 91 -30 5 946 607 206 0 12 chr9 47319162 47319329 -76756843 + (CA)n Simple_repeat Simple_repeat 2 166 0 5 946 196 255 0 0 chr9 47319495 47319546 -76756626 + MER5B DNA MER1_type 3 53 -125 5 946 387 254 213 15 chr9 47319905 47320041 -76756131 + B3A SINE B2 9 171 -27 5 946 541 253 38 33 chr9 47320261 47320445 -76755727 + B4A SINE B4 101 285 -7 5 946 488 16 16 0 chr9 47320447 47320508 -76755664 + (TAAG)n Simple_repeat Simple_repeat 4 65 0 5 946 3095 92 136 4 chr9 47320508 47321031 -76755141 - MT2B LTR ERVL -9 592 1 5 946 312 27 0 0 chr9 47321037 47321074 -76755098 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 946 264 332 101 68 chr9 47321115 47321322 -76754850 + MamRep1879 DNA hAT? 3 216 0 5 946 409 296 24 36 chr9 47322538 47322703 -76753469 + MER5A DNA MER1_type 23 185 -4 5 946 396 0 0 0 chr9 47323075 47323119 -76753053 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 946 209 341 23 0 chr9 47323193 47323281 -76752891 + MIRc SINE MIR 70 159 -109 5 946 716 144 96 22 chr9 47323992 47324127 -76752045 + B1_Mur3 SINE Alu 5 149 0 5 946 555 341 52 33 chr9 47325261 47325567 -76750605 - MLT1D LTR MaLR -162 343 32 5 946 402 151 0 0 chr9 47325575 47325648 -76750524 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 946 187 308 41 49 chr9 47326064 47326187 -76749985 + L2c LINE L2 3260 3381 -6 5 946 378 0 0 0 chr9 47327018 47327060 -76749112 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 946 189 0 0 0 chr9 47327060 47327080 -76749092 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 946 433 368 43 0 chr9 47327085 47327248 -76748924 - B3A SINE B2 -27 171 2 5 946 212 0 36 0 chr9 47329381 47329409 -76746763 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 946 2152 119 95 5 chr9 47330761 47331140 -76745032 - MTC LTR MaLR -8 413 1 5 946 306 0 0 0 chr9 47331286 47331320 -76744852 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 946 907 156 0 0 chr9 47331321 47331456 -76744716 - B1_Mus2 SINE Alu -11 136 2 5 946 1436 73 6 0 chr9 47332722 47332900 -76743272 + B2_Mm1t SINE B2 1 179 -14 5 946 1189 61 0 0 chr9 47332914 47333061 -76743111 - B1_Mus2 SINE Alu 0 147 1 5 946 234 91 0 0 chr9 47333081 47333114 -76743058 + (A)n Simple_repeat Simple_repeat 1 33 0 5 946 2571 284 76 20 chr9 47333116 47333555 -76742617 - RCHARR1 DNA MER1_type -15 959 518 5 946 1118 56 0 0 chr9 47333555 47333698 -76742474 - L1_Mus1 LINE L1 0 6567 6425 5 946 950 37 0 0 chr9 47333698 47333805 -76742367 - U6 snRNA snRNA 0 107 1 5 946 2571 284 76 20 chr9 47333805 47334269 -76741903 - RCHARR1 DNA MER1_type -457 517 5 5 946 765 183 143 59 chr9 47334322 47334525 -76741647 - URR1B DNA MER1_type -5 220 1 5 946 328 336 0 28 chr9 47334653 47334794 -76741378 - MLT1A LTR MaLR -204 170 34 5 946 186 103 0 0 chr9 47334794 47334823 -76741349 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 946 561 52 0 0 chr9 47335208 47335285 -76740887 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 946 297 0 0 0 chr9 47335285 47335317 -76740855 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 946 29 0 0 0 chr9 47336980 47337009 -76739163 + AT_rich Low_complexity Low_complexity 1 29 0 5 946 222 91 0 0 chr9 47338491 47338524 -76737648 + (CGG)n Simple_repeat Simple_repeat 3 35 0 5 946 357 162 0 0 chr9 47340905 47340973 -76735199 + (TATG)n Simple_repeat Simple_repeat 2 69 0 5 946 219 69 0 0 chr9 47342578 47342607 -76733565 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 946 342 278 76 27 chr9 47343744 47343929 -76732243 - L1MC5 LINE L1 -52 7909 7716 5 946 214 194 0 0 chr9 47344341 47344377 -76731795 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 946 839 242 14 19 chr9 47344832 47345043 -76731129 - B3 SINE B2 -6 210 1 5 946 372 43 0 0 chr9 47345283 47345329 -76730843 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 946 269 335 134 101 chr9 47346252 47346431 -76729741 - ID_B1 SINE B4 -36 188 4 5 946 243 0 0 0 chr9 47347524 47347551 -76728621 + (T)n Simple_repeat Simple_repeat 1 27 0 5 946 239 279 189 32 chr9 47349395 47349643 -76726529 - L1MC3 LINE L1 -458 7584 7298 5 946 473 264 132 0 chr9 47350012 47350156 -76726016 - RSINE1 SINE B4 -2 163 1 5 946 302 217 43 57 chr9 47350166 47350290 -76725882 - L1MC3 LINE L1 -941 6844 6705 5 946 180 0 0 0 chr9 47350628 47350648 -76725524 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 5 946 459 118 81 23 chr9 47350679 47350766 -76725406 + B1_Mus1 SINE Alu 30 121 -27 5 946 213 65 0 0 chr9 47350806 47350837 -76725335 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 946 297 245 89 30 chr9 47351344 47351445 -76724727 - PB1D10 SINE Alu -6 111 5 5 946 376 248 87 40 chr9 47357110 47357236 -76718936 - MLT1A1 LTR MaLR -2 406 275 5 946 692 205 105 6 chr9 47357599 47357771 -76718401 + B3A SINE B2 2 190 -8 5 946 189 0 0 0 chr9 47358091 47358112 -76718060 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 946 211 28 0 53 chr9 47359318 47359356 -76716816 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 946 1066 95 0 7 chr9 47360582 47360730 -76715442 + B1_Mus2 SINE Alu 1 147 0 5 946 899 224 20 5 chr9 47360850 47361047 -76715125 - B3 SINE B2 -16 200 1 5 946 456 268 62 23 chr9 47361080 47361271 -76714901 - ORR1E LTR MaLR -98 272 87 5 946 474 33 0 0 chr9 47362833 47362893 -76713279 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 946 1031 231 239 10 chr9 47362988 47363289 -76712883 - ORR1D2 LTR MaLR 0 370 1 5 946 473 237 37 22 chr9 47363689 47363852 -76712320 + L1ME4a LINE L1 5708 5879 -2003 5 946 572 306 81 26 chr9 47363852 47364124 -76712048 + B4A SINE B4 4 290 -2 5 946 257 258 31 31 chr9 47364615 47364711 -76711461 - RSINE1 SINE B4 -1 164 69 5 946 978 295 112 48 chr9 47367793 47368786 -76707386 - L1MD2 LINE L1 -252 6107 5040 5 946 564 282 46 31 chr9 47368794 47368896 -76707276 + RMER30 DNA MER1_type 1 96 -106 5 946 180 0 0 0 chr9 47368896 47368916 -76707256 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 5 946 564 282 46 31 chr9 47368916 47369007 -76707165 + RMER30 DNA MER1_type 97 196 -6 5 946 544 281 82 13 chr9 47369013 47369244 -76706928 - L1MD2 LINE L1 -1125 5021 4775 5 946 223 350 28 49 chr9 47369245 47369389 -76706783 - MIRb SINE MIR -99 169 29 5 946 627 51 0 0 chr9 47369649 47369728 -76706444 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 5 946 318 316 11 0 chr9 47370162 47370257 -76705915 - PB1D10 SINE Alu -20 97 2 5 946 834 248 28 9 chr9 47370395 47370607 -76705565 - B3 SINE B2 0 216 1 5 946 375 213 110 9 chr9 47370614 47370723 -76705449 - B1F2 SINE Alu -3 146 27 5 946 560 240 91 26 chr9 47371331 47371485 -76704687 + MER5A DNA MER1_type 24 187 -2 5 946 551 239 176 0 chr9 47373007 47373195 -76702977 + ID_B1 SINE B4 3 223 -1 5 946 207 0 0 0 chr9 47375112 47375135 -76701037 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 946 252 0 0 0 chr9 47376987 47377015 -76699157 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 946 245 312 0 12 chr9 47377023 47377104 -76699068 - ID4 SINE ID -2 81 2 5 946 1450 17 0 11 chr9 47377129 47377308 -76698864 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 5 946 192 217 0 0 chr9 47379308 47379354 -76696818 + T-rich Low_complexity Low_complexity 1 46 0 5 946 664 237 183 9 chr9 47380804 47381034 -76695138 + B4 SINE B4 2 271 -21 5 946 616 277 82 0 chr9 47381665 47381860 -76694312 - ID_B1 SINE B4 -12 212 2 5 946 257 232 58 0 chr9 47381979 47382048 -76694124 + L2a LINE L2 3354 3426 0 5 946 183 129 0 0 chr9 47382490 47382521 -76693651 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6 946 22 0 0 0 chr9 47383207 47383229 -76692943 + AT_rich Low_complexity Low_complexity 1 22 0 6 946 252 0 0 0 chr9 47385570 47385598 -76690574 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 6 946 461 230 20 0 chr9 47385614 47385714 -76690458 - B1_Mus2 SINE Alu -43 104 3 6 946 297 214 170 160 chr9 47385714 47385806 -76690366 - ID_B1 SINE B4 0 209 23 6 946 208 329 220 7 chr9 47386343 47386493 -76689679 - MIRc SINE MIR -63 205 24 6 946 200 153 13 77 chr9 47386771 47386849 -76689323 + CT-rich Low_complexity Low_complexity 2 74 0 6 946 1194 22 0 0 chr9 47386866 47387002 -76689170 - B1_Mus1 SINE Alu -12 136 1 6 946 307 263 89 20 chr9 47387259 47387360 -76688812 - RSINE1 SINE B4 -44 121 14 6 946 539 270 164 12 chr9 47387424 47387668 -76688504 - B4A SINE B4 -9 283 3 6 946 345 47 0 0 chr9 47387994 47388037 -76688135 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 6 946 180 97 0 0 chr9 47388039 47388070 -76688102 + (T)n Simple_repeat Simple_repeat 1 31 0 6 946 183 129 0 0 chr9 47388770 47388801 -76687371 + (TCC)n Simple_repeat Simple_repeat 1 31 0 6 946 1394 97 0 5 chr9 47388801 47388988 -76687184 - B2_Mm2 SINE B2 -7 188 3 6 946 323 242 61 31 chr9 47389288 47389386 -76686786 + RSINE1 SINE B4 43 143 -22 6 946 501 157 0 136 chr9 47390519 47390644 -76685528 + B1F2 SINE Alu 42 149 0 6 946 457 230 46 38 chr9 47391459 47391590 -76684582 - ID_B1 SINE B4 -8 216 85 6 946 621 40 0 0 chr9 47391723 47391799 -76684373 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 946 652 278 37 0 chr9 47391820 47392011 -76684161 - B3 SINE B2 -16 200 3 6 946 458 270 130 74 chr9 47395644 47395968 -76680204 - LTR41 LTR ERVL -2 766 425 6 946 587 244 7 13 chr9 47396098 47396252 -76679920 - LTR41 LTR ERVL -615 153 1 6 946 228 225 0 0 chr9 47396406 47396446 -76679726 + polypyrimidine Low_complexity Low_complexity 2 41 0 6 946 873 247 88 35 chr9 47396448 47396708 -76679464 - MTEa LTR MaLR -55 324 51 6 946 1304 245 74 18 chr9 47397271 47397661 -76678511 - MTD LTR MaLR -5 414 3 6 946 244 193 88 0 chr9 47397781 47397838 -76678334 + MIR SINE MIR 86 147 -115 6 946 217 379 10 0 chr9 47397976 47398079 -76678093 + MIRb SINE MIR 3 106 -162 6 946 1110 59 0 0 chr9 47398912 47399047 -76677125 - B1_Mus1 SINE Alu -11 137 3 6 946 273 267 18 37 chr9 47403009 47403118 -76673054 - MTEb LTR MaLR 0 379 273 6 946 379 271 174 12 chr9 47403270 47403431 -76672741 - RMER15 LTR ERVL -42 533 347 6 946 240 220 51 0 chr9 47403631 47403690 -76672482 - ORR1D1 LTR MaLR -312 62 1 6 946 297 0 0 0 chr9 47404322 47404355 -76671817 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 946 642 213 129 91 chr9 47404393 47404656 -76671516 - B4A SINE B4 -17 275 3 6 946 260 315 71 0 chr9 47404682 47404809 -76671363 - L2a LINE L2 -9 3417 3282 6 946 246 136 0 0 chr9 47408719 47408763 -76667409 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 946 210 323 118 15 chr9 47410660 47410795 -76665377 - L2b LINE L2 -6 3369 3221 6 946 819 169 187 45 chr9 47411332 47411530 -76664642 - URR1A DNA MER1_type 0 226 1 6 946 207 0 0 0 chr9 47414085 47414108 -76662064 + (TTA)n Simple_repeat Simple_repeat 2 24 0 6 946 298 230 95 0 chr9 47414466 47414540 -76661632 + ID4_ SINE ID 3 83 0 6 946 239 106 0 41 chr9 47414542 47414591 -76661581 + (CATA)n Simple_repeat Simple_repeat 4 50 0 6 946 280 249 47 16 chr9 47415046 47415152 -76661020 - L1M5 LINE L1 -545 5695 5587 6 946 3151 180 115 39 chr9 47415208 47416096 -76660076 - Lx5 LINE L1 -3 7047 6093 6 946 23 33 0 0 chr9 47416221 47416251 -76659921 + AT_rich Low_complexity Low_complexity 1 30 0 6 946 22 0 0 0 chr9 47417067 47417089 -76659083 + GC_rich Low_complexity Low_complexity 1 22 0 6 946 207 0 0 0 chr9 47419395 47419418 -76656754 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 946 266 135 39 0 chr9 47419837 47419889 -76656283 + T-rich Low_complexity Low_complexity 2 55 0 6 946 697 291 67 0 chr9 47421678 47421888 -76654284 + ID_B1 SINE B4 1 224 0 6 946 357 278 34 17 chr9 47421945 47422062 -76654110 + PB1D7 SINE Alu 1 119 -1 6 946 321 47 0 0 chr9 47424508 47424551 -76651621 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 946 213 324 14 0 chr9 47425759 47425830 -76650342 - ID4 SINE ID -9 74 3 6 946 253 333 96 14 chr9 47427066 47427212 -76648960 - MIRc SINE MIR -77 191 34 6 946 701 269 112 31 chr9 47427592 47427941 -76648231 - MTE2a LTR MaLR 0 379 3 6 946 432 55 0 0 chr9 47427994 47428049 -76648123 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 946 430 322 47 19 chr9 47428675 47428887 -76647285 + MIR SINE MIR 37 254 -8 6 946 837 47 0 0 chr9 47429200 47429306 -76646866 + (TC)n Simple_repeat Simple_repeat 1 106 0 6 946 180 0 0 0 chr9 47432141 47432161 -76644011 + (A)n Simple_repeat Simple_repeat 1 20 0 6 946 1990 159 45 28 chr9 47434099 47434455 -76641717 + ORR1B2 LTR MaLR 4 365 -2 6 946 609 14 0 0 chr9 47435212 47435282 -76640890 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 6 946 832 205 20 51 chr9 47435645 47435840 -76640332 - B3A SINE B2 -9 189 1 6 946 389 319 98 23 chr9 47436431 47436777 -76639395 - L1M5 LINE L1 -767 5379 5008 6 946 326 218 37 73 chr9 47436950 47437059 -76639113 + B1_Mur2 SINE Alu 44 148 -1 6 946 302 291 185 7 chr9 47437220 47437490 -76638682 - L1MC4a LINE L1 -97 7785 7468 6 946 2289 93 12 36 chr9 47437593 47437928 -76638244 + ORR1A2 LTR MaLR 1 327 0 6 946 1501 228 161 32 chr9 47437942 47438414 -76637758 - MT2A LTR ERVL 0 533 1 6 946 642 282 106 26 chr9 47439093 47439366 -76636806 - L1MC1 LINE L1 -43 6290 5996 6 946 858 261 109 16 chr9 47439563 47439867 -76636305 - L1MC1 LINE L1 -618 5715 5384 6 946 228 35 0 0 chr9 47439869 47439898 -76636274 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 946 790 249 76 0 chr9 47440213 47440410 -76635762 + B3 SINE B2 5 216 0 6 946 236 248 67 76 chr9 47440466 47440571 -76635601 - RSINE1 SINE B4 -58 107 4 6 946 254 151 0 86 chr9 47440598 47440624 -76635548 + (CAGC)n Simple_repeat Simple_repeat 2 27 0 6 946 399 41 0 0 chr9 47440624 47440673 -76635499 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 946 216 224 19 75 chr9 47440673 47440752 -76635420 + (CAGT)n Simple_repeat Simple_repeat 3 77 0 6 946 576 0 0 0 chr9 47440799 47440863 -76635309 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 946 470 31 16 0 chr9 47440863 47440926 -76635246 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 946 342 220 0 0 chr9 47441164 47441264 -76634908 + (TG)n Simple_repeat Simple_repeat 2 101 0 6 946 840 263 14 25 chr9 47441282 47441563 -76634609 - B4A SINE B4 -13 279 2 6 946 292 256 24 79 chr9 47446164 47446291 -76629881 - MER5B DNA MER1_type -39 139 20 6 946 222 189 0 0 chr9 47447417 47447486 -76628686 + C-rich Low_complexity Low_complexity 1 69 0 6 946 670 244 76 65 chr9 47447666 47447942 -76628230 - B4 SINE B4 -9 283 5 6 947 246 81 0 0 chr9 47448401 47448438 -76627734 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 947 237 33 0 0 chr9 47448441 47448471 -76627701 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 947 203 61 0 29 chr9 47448564 47448598 -76627574 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 6 947 441 208 9 56 chr9 47448610 47448717 -76627455 - B1_Mur2 SINE Alu -31 118 17 6 947 312 333 47 18 chr9 47448909 47449080 -76627092 - L1M5 LINE L1 -307 5817 5642 6 947 252 86 0 0 chr9 47450015 47450050 -76626122 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 6 947 404 306 79 23 chr9 47450418 47450595 -76625577 + Lx8 LINE L1 7047 7233 -240 6 947 333 62 0 0 chr9 47450704 47450752 -76625420 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 947 330 255 66 0 chr9 47451506 47451612 -76624560 - L1MC4a LINE L1 -149 7893 7781 6 947 261 0 0 0 chr9 47452238 47452267 -76623905 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 947 424 320 33 44 chr9 47452379 47452659 -76623513 - L1MC4a LINE L1 -1005 7037 6735 6 947 405 0 0 0 chr9 47452700 47452745 -76623427 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 947 980 196 10 10 chr9 47452840 47453036 -76623136 - B3A SINE B2 -1 197 2 6 947 268 279 11 23 chr9 47453512 47453600 -76622572 + CT-rich Low_complexity Low_complexity 2 88 0 6 947 285 29 0 0 chr9 47457840 47457874 -76618298 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 6 947 255 298 82 41 chr9 47457884 47458031 -76618141 - MER113A DNA MER1_type -127 187 35 6 947 270 341 71 36 chr9 47458212 47458352 -76617820 + ID_B1 SINE B4 75 219 -5 6 947 378 269 66 25 chr9 47458232 47458354 -76617818 + B1F SINE Alu 20 146 -3 6 947 265 297 26 51 chr9 47458364 47458481 -76617691 - MIR SINE MIR -77 131 18 6 947 360 59 0 0 chr9 47458752 47458803 -76617369 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 947 232 395 8 37 chr9 47458927 47459061 -76617111 - B4A SINE B4 -128 164 35 6 947 545 206 53 8 chr9 47459278 47459410 -76616762 - ID_B1 SINE B4 -1 223 86 6 947 24 32 0 0 chr9 47460058 47460089 -76616083 + AT_rich Low_complexity Low_complexity 1 31 0 6 947 1601 211 43 0 chr9 47461095 47461418 -76614754 - MER58B DNA MER1_type -4 337 1 6 947 351 0 0 0 chr9 47463436 47463475 -76612697 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 6 947 25 51 0 0 chr9 47463858 47463897 -76612275 + AT_rich Low_complexity Low_complexity 1 39 0 7 947 300 325 17 0 chr9 47464022 47464157 -76612015 + PB1D9 SINE Alu 5 141 -8 7 947 395 195 8 0 chr9 47464159 47464277 -76611895 + GA-rich Low_complexity Low_complexity 1 119 0 7 947 392 309 45 52 chr9 47464585 47464819 -76611353 - L1ME3A LINE L1 -19 6221 5923 7 947 1079 286 81 34 chr9 47464830 47465413 -76610759 - L1MC5 LINE L1 -48 7913 7304 7 947 1159 68 7 0 chr9 47465494 47465640 -76610532 - B1_Mus1 SINE Alu 0 148 2 7 947 443 236 230 9 chr9 47465886 47466108 -76610064 - MER2 DNA MER2_type -26 319 49 7 947 358 282 70 109 chr9 47466173 47466496 -76609676 - L1MC5 LINE L1 -1018 7024 6668 7 947 314 348 65 32 chr9 47467896 47468113 -76608059 - L4 LINE RTE -196 1833 1610 7 947 417 170 85 84 chr9 47468258 47468483 -76607689 - L1MEc LINE L1 -3939 2679 2451 7 947 226 285 115 33 chr9 47468615 47468858 -76607314 - L1MEc LINE L1 -4375 2243 1981 7 947 454 296 44 118 chr9 47469128 47469511 -76606661 - MLT1A0 LTR MaLR 0 365 11 7 947 774 211 63 0 chr9 47470540 47470730 -76605442 - B3 SINE B2 -13 203 2 7 947 24 0 0 0 chr9 47470896 47470920 -76605252 + AT_rich Low_complexity Low_complexity 1 24 0 7 947 722 279 173 29 chr9 47471373 47471855 -76604317 + Kanga2_a DNA Tc2 44 595 -293 7 947 280 257 0 0 chr9 47472072 47472142 -76604030 + RSINE1 SINE B4 76 145 -20 7 947 22 0 0 0 chr9 47473242 47473264 -76602908 + AT_rich Low_complexity Low_complexity 1 22 0 7 947 219 36 0 0 chr9 47474210 47474238 -76601934 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 947 366 333 39 8 chr9 47474385 47474515 -76601657 + B1F SINE Alu 9 142 -7 7 947 3199 11 0 0 chr9 47474709 47475067 -76601105 - L1Md_A LINE L1 0 6582 6225 7 947 629 114 9 0 chr9 47475160 47475265 -76600907 + (TG)n Simple_repeat Simple_repeat 1 106 0 7 947 364 306 88 0 chr9 47475323 47475483 -76600689 - Tigger13a DNA MER2_type -294 477 304 7 947 273 119 0 0 chr9 47475623 47475665 -76600507 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 947 419 236 33 40 chr9 47475683 47475833 -76600339 + L1_Rod LINE L1 3333 3481 -2366 7 947 246 284 40 0 chr9 47475847 47475921 -76600251 - Tigger13a DNA MER2_type -539 232 156 7 947 313 310 11 11 chr9 47476651 47476739 -76599433 - PB1D10 SINE Alu -15 102 15 7 947 257 337 11 43 chr9 47476665 47476758 -76599414 - ID_B1 SINE B4 -55 169 80 7 947 675 0 0 0 chr9 47477903 47477978 -76598194 + (CTG)n Simple_repeat Simple_repeat 2 76 0 7 947 390 129 0 0 chr9 47479359 47479421 -76596751 + (TCC)n Simple_repeat Simple_repeat 2 63 0 7 947 184 194 0 0 chr9 47480482 47480518 -76595654 + MIR SINE MIR 215 250 -12 7 947 466 254 63 106 chr9 47481292 47481499 -76594673 - B3A SINE B2 0 198 1 7 947 593 238 55 14 chr9 47482513 47482658 -76593514 + B3A SINE B2 1 151 -47 7 947 288 319 91 12 chr9 47482932 47483097 -76593075 - MIR SINE MIR -77 185 8 7 947 422 292 49 18 chr9 47484323 47484487 -76591685 - B4A SINE B4 0 292 124 7 947 1043 64 0 0 chr9 47484628 47484769 -76591403 - B1_Mus1 SINE Alu -2 146 6 7 947 180 135 0 0 chr9 47484770 47484807 -76591365 + (CTTG)n Simple_repeat Simple_repeat 2 38 0 7 947 1557 68 0 3 chr9 47484809 47485154 -76591018 + (TTTC)n Simple_repeat Simple_repeat 1 343 0 7 947 1317 64 41 6 chr9 47485163 47485335 -76590837 - B2_Mm2 SINE B2 -16 179 2 7 947 213 132 0 0 chr9 47485433 47485471 -76590701 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 947 213 121 0 0 chr9 47486364 47486397 -76589775 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 7 947 284 329 0 0 chr9 47486397 47486479 -76589693 - ID4_ SINE ID 0 83 2 7 947 793 179 21 14 chr9 47486951 47487093 -76589079 + B1_Mur3 SINE Alu 1 143 -6 7 947 434 146 0 12 chr9 47487093 47487176 -76588996 + GA-rich Low_complexity Low_complexity 1 82 0 7 947 670 171 61 15 chr9 47488141 47488272 -76587900 + B1_Mus1 SINE Alu 2 138 -10 7 947 298 292 81 34 chr9 47488497 47488646 -76587526 - RSINE1 SINE B4 -6 159 4 7 947 570 243 49 0 chr9 47489060 47489204 -76586968 + Lx6 LINE L1 7284 7434 -26 7 947 269 282 136 0 chr9 47489632 47489735 -76586437 - MER3 DNA MER1_type -85 124 8 7 947 369 62 0 0 chr9 47492816 47492864 -76583308 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 947 515 271 143 41 chr9 47494493 47494689 -76581483 + B3 SINE B2 1 216 0 7 947 1080 218 24 0 chr9 47494719 47494930 -76581242 - B3 SINE B2 0 216 1 7 947 843 253 36 30 chr9 47498010 47498221 -76577951 - B3 SINE B2 -5 211 2 7 947 187 381 36 0 chr9 47498321 47498405 -76577767 - MIRc SINE MIR -134 134 48 7 947 681 254 46 20 chr9 47498684 47498881 -76577291 + MIR SINE MIR 37 238 -24 7 947 293 295 101 21 chr9 47498882 47499057 -76577115 + MIR SINE MIR 10 216 -52 7 947 317 286 20 0 chr9 47499125 47499223 -76576949 - L1M5 LINE L1 -401 5723 5624 7 947 720 264 109 57 chr9 47499395 47499744 -76576428 + MTEa LTR MaLR 1 367 -12 7 947 231 114 0 0 chr9 47500171 47500215 -76575957 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 1 947 1208 48 7 0 chr9 47500215 47500361 -76575811 - B1_Mm SINE Alu 0 147 1 2 947 458 196 9 0 chr9 47501788 47501895 -76574277 + CT-rich Low_complexity Low_complexity 2 109 0 3 947 361 343 6 29 chr9 47503448 47503619 -76572553 + MIR SINE MIR 60 226 -36 4 947 360 0 0 0 chr9 47503715 47503755 -76572417 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 5 947 534 54 0 0 chr9 47505122 47505196 -76570976 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 947 648 0 0 0 chr9 47505224 47505296 -76570876 + (TC)n Simple_repeat Simple_repeat 1 72 0 7 947 198 0 0 0 chr9 47505296 47505318 -76570854 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 947 973 67 0 0 chr9 47505334 47505469 -76570703 - B1_Mus1 SINE Alu -2 146 12 9 947 243 88 0 0 chr9 47505474 47505508 -76570664 + (T)n Simple_repeat Simple_repeat 1 34 0 1 947 22 0 0 0 chr9 47505831 47505853 -76570319 + AT_rich Low_complexity Low_complexity 1 22 0 1 947 1830 309 91 14 chr9 47506311 47507246 -76568926 + Charlie1a DNA MER1_type 406 1412 -43 1 947 360 59 0 0 chr9 47508083 47508134 -76568038 + (T)n Simple_repeat Simple_repeat 1 51 0 1 947 249 250 0 0 chr9 47508541 47508597 -76567575 + Charlie4z DNA MER1_type 112 167 0 1 947 240 256 72 12 chr9 47509712 47509795 -76566377 - ORR1E LTR MaLR -217 142 55 1 947 199 343 30 20 chr9 47510001 47510102 -76566070 + L2 LINE L2 815 916 -2503 1 947 21 0 0 0 chr9 47510799 47510820 -76565352 + AT_rich Low_complexity Low_complexity 1 21 0 1 947 22 0 0 0 chr9 47510950 47510972 -76565200 + AT_rich Low_complexity Low_complexity 1 22 0 1 947 202 271 0 17 chr9 47511501 47511561 -76564611 + (CTCG)n Simple_repeat Simple_repeat 3 61 0 1 947 183 42 0 0 chr9 47513133 47513157 -76563015 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 2 947 222 91 0 0 chr9 47516948 47516981 -76559191 + (T)n Simple_repeat Simple_repeat 1 33 0 2 947 1427 268 122 38 chr9 47518093 47518825 -76557347 + L1MB7 LINE L1 5345 6139 -45 2 947 247 329 23 34 chr9 47521425 47521601 -76554571 + MIR SINE MIR 86 259 -3 2 947 549 0 0 0 chr9 47522492 47522553 -76553619 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 947 372 312 171 16 chr9 47523725 47523976 -76552196 + B4A SINE B4 1 290 -2 2 947 270 0 0 0 chr9 47525042 47525072 -76551100 + (CGGG)n Simple_repeat Simple_repeat 1 30 0 2 947 183 309 44 67 chr9 47525892 47525982 -76550190 + L2b LINE L2 3270 3357 -18 2 947 229 321 74 45 chr9 47526721 47526897 -76549275 - MLT1J LTR MaLR -222 290 110 2 947 199 406 24 0 chr9 47528504 47528627 -76547545 + L2c LINE L2 3258 3383 -4 2 947 813 251 105 11 chr9 47528853 47529119 -76547053 + L1MA6 LINE L1 5606 5896 -404 3 947 207 0 0 0 chr9 47530142 47530165 -76546007 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 947 668 137 7 21 chr9 47534905 47535047 -76541125 + (TCTA)n Simple_repeat Simple_repeat 3 142 0 3 947 22 35 0 0 chr9 47537587 47537616 -76538556 + AT_rich Low_complexity Low_complexity 1 29 0 3 947 677 244 16 33 chr9 47537817 47538023 -76538149 - B3A SINE B2 -1 192 4 3 947 196 265 14 29 chr9 47538049 47538119 -76538053 - MIRc SINE MIR -133 135 67 3 947 603 291 50 20 chr9 47539397 47539597 -76536575 + B3A SINE B2 11 216 0 3 947 1137 15 0 0 chr9 47539799 47539930 -76536242 + (TG)n Simple_repeat Simple_repeat 1 131 0 3 947 582 262 40 10 chr9 47540133 47540315 -76535857 + B3A SINE B2 1 179 -37 3 947 207 0 0 0 chr9 47546179 47546202 -76529970 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 947 192 77 0 0 chr9 47547762 47547788 -76528384 + (T)n Simple_repeat Simple_repeat 1 26 0 4 947 477 90 0 0 chr9 47548172 47548239 -76527933 + (T)n Simple_repeat Simple_repeat 1 67 0 4 947 204 188 42 0 chr9 47548386 47548434 -76527738 + (TTG)n Simple_repeat Simple_repeat 1 50 0 4 947 412 226 50 139 chr9 47548505 47548685 -76527487 + RSINE1 SINE B4 2 165 0 4 947 263 236 87 78 chr9 47548793 47548908 -76527264 + PB1D10 SINE Alu 2 117 0 4 947 250 314 15 83 chr9 47548911 47549043 -76527129 - MER3 DNA MER1_type -81 128 6 4 947 314 276 0 0 chr9 47549159 47549235 -76526937 - PB1D7 SINE Alu -4 116 41 4 947 227 305 31 55 chr9 47549924 47550101 -76526071 + L2b LINE L2 2954 3118 -257 4 947 217 197 15 15 chr9 47550785 47550852 -76525320 + CT-rich Low_complexity Low_complexity 2 68 0 4 947 228 269 15 15 chr9 47552722 47552790 -76523382 + MIR SINE MIR 116 183 -79 4 947 231 36 0 0 chr9 47553458 47553486 -76522686 + (T)n Simple_repeat Simple_repeat 1 28 0 5 947 204 158 0 0 chr9 47553618 47553656 -76522516 + T-rich Low_complexity Low_complexity 1 38 0 5 947 535 277 143 70 chr9 47556620 47556892 -76519280 - B4 SINE B4 0 292 1 5 947 253 282 35 12 chr9 47558460 47558546 -76517626 + Lx7 LINE L1 7588 7675 -21 5 947 1606 151 18 48 chr9 47558560 47558896 -76517276 - ORR1C1 LTR MaLR 0 378 29 5 947 381 172 172 0 chr9 47558890 47558989 -76517183 - ORR1C1 LTR MaLR -262 116 1 5 947 199 333 10 50 chr9 47562417 47562518 -76513654 - L2b LINE L2 -212 3163 3067 5 947 207 0 0 0 chr9 47564649 47564672 -76511500 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 5 947 912 245 10 0 chr9 47564808 47565000 -76511172 + B3 SINE B2 4 197 -19 5 947 286 274 97 10 chr9 47565282 47565385 -76510787 - PB1D10 SINE Alu -5 112 1 5 947 186 43 0 0 chr9 47565879 47565902 -76510270 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 947 284 279 12 25 chr9 47566916 47566997 -76509175 + ID4_ SINE ID 3 82 -1 6 947 525 32 0 0 chr9 47567003 47567066 -76509106 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 947 283 345 25 0 chr9 47571558 47571677 -76504495 - MER5A DNA MER1_type -5 184 63 6 947 197 361 104 8 chr9 47572592 47572726 -76503446 - MIRb SINE MIR -66 202 56 6 947 369 145 0 0 chr9 47573406 47573468 -76502704 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 947 884 264 91 27 chr9 47573661 47573992 -76502180 + L1MC4a LINE L1 6938 7289 -593 6 947 274 243 57 0 chr9 47574017 47574087 -76502085 + MLT1F1 LTR MaLR 16 89 -480 6 947 234 0 0 0 chr9 47574975 47575001 -76501171 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 947 801 152 34 7 chr9 47575206 47575352 -76500820 + B1_Mur4 SINE Alu 1 150 0 6 947 376 263 99 20 chr9 47575566 47575667 -76500505 - PB1D10 SINE Alu -1 116 8 6 947 276 372 109 0 chr9 47575599 47575736 -76500436 - ID_B1 SINE B4 -68 156 5 7 947 293 242 98 38 chr9 47575756 47575889 -76500283 - B1F1 SINE Alu -8 141 1 7 947 286 118 59 0 chr9 47576879 47576930 -76499242 - ORR1A2 LTR MaLR -273 54 1 7 948 272 239 10 89 chr9 47580572 47580673 -76495499 + Lx8 LINE L1 7282 7374 -99 7 948 577 156 32 16 chr9 47580783 47580907 -76495265 - B1_Mus2 SINE Alu -21 126 1 7 948 249 318 79 26 chr9 47581589 47581741 -76494431 + ORSL-2b DNA Tip100 342 501 -7 7 948 260 320 47 8 chr9 47582012 47582141 -76494031 - MIRb SINE MIR -78 190 57 7 948 508 281 24 6 chr9 47582257 47582422 -76493750 + B4 SINE B4 58 225 -67 7 948 1052 272 110 9 chr9 47583600 47583919 -76492253 + MTE2a LTR MaLR 27 377 -2 7 948 312 27 0 0 chr9 47584075 47584112 -76492060 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 948 24 0 0 0 chr9 47587001 47587025 -76489147 + AT_rich Low_complexity Low_complexity 1 24 0 8 948 313 298 73 69 chr9 47590538 47590812 -76485360 + B4A SINE B4 1 275 -17 8 948 221 260 27 0 chr9 47592241 47592314 -76483858 + B1F1 SINE Alu 74 148 -1 8 948 420 208 10 20 chr9 47592349 47592447 -76483725 + RSINE1 SINE B4 69 165 0 8 948 335 105 18 0 chr9 47594807 47594864 -76481308 + (ATGGTG)n Simple_repeat Simple_repeat 1 58 0 8 948 225 314 163 28 chr9 47594878 47595019 -76481153 - MIRb SINE MIR -8 260 101 8 948 261 247 91 20 chr9 47596863 47596962 -76479210 + RSINE1 SINE B4 30 135 -30 8 948 292 235 0 47 chr9 47597258 47597365 -76478807 + T-rich Low_complexity Low_complexity 1 102 0 8 948 246 105 0 0 chr9 47597534 47597572 -76478600 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 948 393 336 195 0 chr9 47599486 47599727 -76476445 + B4 SINE B4 5 292 0 8 948 3401 83 10 25 chr9 47601868 47602349 -76473823 - Lx4A LINE L1 -969 6089 5616 9 948 1671 128 8 4 chr9 47602350 47602593 -76473579 + Lx4A LINE L1 5408 5651 -226 9 948 308 95 0 0 chr9 47602594 47602636 -76473536 + Lx4A LINE L1 5621 5662 -1396 9 948 21 0 0 0 chr9 47604593 47604614 -76471558 + AT_rich Low_complexity Low_complexity 1 21 0 9 948 358 218 159 16 chr9 47606344 47606470 -76469702 + MIR SINE MIR 101 244 -18 9 948 483 18 0 0 chr9 47606481 47606537 -76469635 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 9 948 896 139 24 12 chr9 47608567 47608734 -76467438 - URR1B DNA MER1_type 0 225 57 9 948 357 295 99 14 chr9 47608802 47608943 -76467229 - MLT1D LTR MaLR -349 156 4 9 948 23 78 0 0 chr9 47610457 47610508 -76465664 + AT_rich Low_complexity Low_complexity 1 51 0 9 948 485 214 0 37 chr9 47613444 47613456 -76462716 - PB1D7 SINE Alu -1 119 109 9 948 288 0 0 0 chr9 47613456 47613488 -76462684 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 948 485 214 0 37 chr9 47613488 47613582 -76462590 - PB1D7 SINE Alu -12 108 17 9 948 510 17 0 0 chr9 47615779 47615838 -76460334 + (TA)n Simple_repeat Simple_repeat 1 59 0 9 948 432 0 0 0 chr9 47618496 47618544 -76457628 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 948 1202 50 0 0 chr9 47618546 47618687 -76457485 - B1_Mus1 SINE Alu -6 142 2 1 948 712 250 44 6 chr9 47618721 47618902 -76457270 + B3A SINE B2 1 188 -10 1 948 249 231 23 114 chr9 47620453 47620541 -76455631 + IAPEY2_LTR LTR ERVK 84 163 -194 1 948 251 250 188 0 chr9 47620602 47620666 -76455506 + ID4_ SINE ID 2 77 -6 1 948 384 271 37 9 chr9 47621177 47621285 -76454887 + B1F2 SINE Alu 18 128 -21 1 948 188 327 0 0 chr9 47621941 47621993 -76454179 - L2a LINE L2 -76 3350 3299 1 948 198 0 0 0 chr9 47622121 47622143 -76454029 + (A)n Simple_repeat Simple_repeat 1 22 0 1 948 970 109 299 0 chr9 47623172 47623346 -76452826 - URR1A DNA MER1_type 0 226 1 1 948 247 293 95 54 chr9 47623843 47623991 -76452181 - MIR SINE MIR -4 258 105 1 948 293 237 66 0 chr9 47624592 47624668 -76451504 - ID4_ SINE ID -1 82 2 1 948 285 146 0 0 chr9 47625419 47625467 -76450705 + (T)n Simple_repeat Simple_repeat 1 48 0 1 948 297 155 0 0 chr9 47626840 47626898 -76449274 + (CCA)n Simple_repeat Simple_repeat 3 60 0 1 948 230 270 13 63 chr9 47628409 47628488 -76447684 - ID4_ SINE ID -7 76 2 1 948 652 180 9 0 chr9 47630045 47630156 -76446016 + PB1D9 SINE Alu 2 113 -7 1 948 474 132 0 0 chr9 47630157 47630233 -76445939 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 948 204 67 0 0 chr9 47630935 47630965 -76445207 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 1 948 709 254 125 45 chr9 47632832 47633096 -76443076 + B4A SINE B4 2 286 -6 1 948 444 147 0 0 chr9 47633104 47633179 -76442993 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 948 22 0 0 0 chr9 47634422 47634444 -76441728 + AT_rich Low_complexity Low_complexity 1 22 0 1 948 480 59 0 0 chr9 47636718 47636786 -76439386 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 948 555 168 30 0 chr9 47638939 47639040 -76437132 + PB1D9 SINE Alu 6 109 -11 1 948 189 0 0 0 chr9 47640251 47640272 -76435900 + (A)n Simple_repeat Simple_repeat 1 21 0 1 948 189 107 0 0 chr9 47640680 47640708 -76435464 + (A)n Simple_repeat Simple_repeat 1 28 0 1 948 209 176 0 0 chr9 47640900 47640934 -76435238 + C-rich Low_complexity Low_complexity 2 35 0 1 948 408 181 0 0 chr9 47641030 47641113 -76435059 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 1 948 333 0 0 0 chr9 47642699 47642736 -76433436 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 948 270 253 101 22 chr9 47643681 47643770 -76432402 - L2b LINE L2 -3 3372 3277 1 948 22 56 0 0 chr9 47646846 47646882 -76429290 + AT_rich Low_complexity Low_complexity 1 36 0 1 948 233 236 108 27 chr9 47648172 47648246 -76427926 - L2b LINE L2 -6 3369 3290 1 948 246 298 18 0 chr9 47648868 47648925 -76427247 + PB1D10 SINE Alu 13 70 -47 1 948 231 286 70 14 chr9 47649848 47649919 -76426253 - MIRb SINE MIR -144 124 50 1 948 1197 73 0 0 chr9 47650603 47650781 -76425391 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 948 320 91 17 68 chr9 47650802 47650861 -76425311 - HAL1-3A_ME LINE L1 -830 2028 1973 1 948 420 122 0 0 chr9 47650861 47650943 -76425229 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 948 232 327 26 34 chr9 47651757 47651874 -76424298 - LTR45C LTR ERV1 -163 376 261 1 948 213 121 0 0 chr9 47652028 47652061 -76424111 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1 948 1402 278 41 8 chr9 47653911 47654277 -76421895 + MTEb LTR MaLR 1 378 -1 1 948 384 22 0 0 chr9 47654286 47654331 -76421841 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 948 180 0 0 0 chr9 47655959 47655979 -76420193 + (CCCCCA)n Simple_repeat Simple_repeat 4 23 0 1 948 321 89 0 0 chr9 47659112 47659157 -76417015 + (A)n Simple_repeat Simple_repeat 1 45 0 1 948 195 100 0 0 chr9 47659665 47659695 -76416477 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 1 948 212 77 26 0 chr9 47660276 47660315 -76415857 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 948 217 226 0 0 chr9 47660732 47660794 -76415378 + A-rich Low_complexity Low_complexity 1 62 0 1 948 329 0 0 24 chr9 47660986 47661028 -76415144 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 948 198 150 0 0 chr9 47661584 47661624 -76414548 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 948 223 294 162 0 chr9 47662925 47662993 -76413179 + ID2 SINE ID 2 80 -3 1 948 249 33 0 0 chr9 47664647 47664677 -76411495 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 948 273 57 0 0 chr9 47665304 47665339 -76410833 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 948 40 0 0 0 chr9 47666168 47666208 -76409964 + AT_rich Low_complexity Low_complexity 1 40 0 1 948 239 301 44 89 chr9 47666284 47666419 -76409753 - B4 SINE B4 -84 208 80 1 948 216 309 47 26 chr9 47668734 47668819 -76407353 + L2c LINE L2 3227 3310 -77 1 948 309 340 17 76 chr9 47669153 47669325 -76406847 + ORSL-2b DNA Tip100 25 186 -322 1 948 249 240 9 71 chr9 47669481 47669593 -76406579 + CT-rich Low_complexity Low_complexity 5 109 0 1 948 1026 78 0 0 chr9 47670873 47671014 -76405158 + (TC)n Simple_repeat Simple_repeat 2 142 0 1 948 318 67 0 0 chr9 47671372 47671417 -76404755 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 948 549 303 28 21 chr9 47671585 47671730 -76404442 - B1F1 SINE Alu -2 147 2 1 948 273 363 35 9 chr9 47671730 47671828 -76404344 - B1F2 SINE Alu -45 104 4 1 948 289 222 13 40 chr9 47672640 47672715 -76403457 - MIR3 SINE MIR -3 205 133 1 948 1158 43 58 0 chr9 47672870 47673009 -76403163 + B1_Mus1 SINE Alu 2 148 0 1 948 256 147 59 0 chr9 47673009 47673077 -76403095 + A-rich Low_complexity Low_complexity 4 75 0 1 948 241 261 43 0 chr9 47673077 47673146 -76403026 + MER5A DNA MER1_type 67 138 -51 1 948 225 298 27 41 chr9 47673281 47673378 -76402794 + L2c LINE L2 3265 3371 -16 1 948 218 316 37 25 chr9 47673671 47673752 -76402420 - MIRm SINE MIR 0 276 195 1 948 848 204 122 39 chr9 47676275 47676479 -76399693 + ID_B1 SINE B4 2 222 -2 1 948 347 324 10 10 chr9 47676693 47676796 -76399376 + MLT1A LTR MaLR 243 345 -29 1 948 243 0 0 0 chr9 47677286 47677313 -76398859 + (TCC)n Simple_repeat Simple_repeat 3 29 0 1 948 489 158 25 50 chr9 47678167 47678287 -76397885 - PB1D7 SINE Alu -1 119 3 1 948 210 340 10 58 chr9 47678563 47678666 -76397506 - L3b LINE CR1 -100 382 285 1 948 850 175 0 0 chr9 47678731 47678874 -76397298 - B1_Mus2 SINE Alu 0 147 5 1 948 394 278 96 0 chr9 47680605 47680720 -76395452 + B1F SINE Alu 5 130 -19 1 948 497 238 145 35 chr9 47680746 47680946 -76395226 + ID_B1 SINE B4 1 222 -2 1 948 495 33 0 0 chr9 47681761 47681822 -76394350 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 948 521 88 0 12 chr9 47682586 47682667 -76393505 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 948 629 151 0 8 chr9 47682944 47683064 -76393108 + CT-rich Low_complexity Low_complexity 1 119 0 1 948 333 253 72 0 chr9 47683076 47683159 -76393013 - ID_B1 SINE B4 -54 170 82 1 948 289 289 167 0 chr9 47683166 47683280 -76392892 + MIRb SINE MIR 112 244 -24 1 948 351 312 17 23 chr9 47683464 47683638 -76392534 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 948 433 214 11 70 chr9 47683556 47683742 -76392430 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 1 948 300 193 50 0 chr9 47683785 47683904 -76392268 + (CATA)n Simple_repeat Simple_repeat 4 128 0 1 948 350 259 23 35 chr9 47683916 47684167 -76392005 + (CATA)n Simple_repeat Simple_repeat 1 248 0 1 948 318 50 0 0 chr9 47684445 47684485 -76391687 + (CGTG)n Simple_repeat Simple_repeat 4 43 0 1 948 239 298 9 122 chr9 47684561 47684668 -76391504 + RMER21B LTR ERV1 635 729 -113 1 948 299 286 63 117 chr9 47685491 47685697 -76390475 - MamRep38 DNA hAT -96 199 5 1 948 1110 275 7 21 chr9 47686456 47686738 -76389434 + B4 SINE B4 1 278 -14 1 948 1122 225 0 0 chr9 47687584 47687793 -76388379 + B3 SINE B2 4 212 -4 1 948 219 384 72 0 chr9 47687976 47688101 -76388071 + MIRb SINE MIR 117 250 -18 1 948 392 340 20 27 chr9 47689111 47689131 -76387041 + B1F1 SINE Alu 2 148 -1 1 948 549 238 0 47 chr9 47689131 47689259 -76386913 + ID_B1 SINE B4 102 223 -1 1 948 870 182 0 7 chr9 47689436 47689585 -76386587 - B1_Mur2 SINE Alu -1 148 1 1 948 184 203 123 86 chr9 47689937 47690018 -76386154 - L2b LINE L2 -5 3370 3287 1 948 472 304 45 45 chr9 47691032 47691211 -76384961 + B4A SINE B4 7 185 -107 1 948 237 305 12 35 chr9 47691609 47691621 -76384551 - ID4_ SINE ID 0 83 35 1 948 245 313 0 0 chr9 47691621 47691688 -76384484 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 1 948 398 252 196 0 chr9 47691757 47691900 -76384272 - MER58A DNA MER1_type -6 218 48 1 948 438 238 114 0 chr9 47691916 47692021 -76384151 + B1F2 SINE Alu 18 134 -15 1 948 359 98 0 0 chr9 47692652 47692703 -76383469 + HAL1-3A_ME LINE L1 1968 2018 -840 1 948 449 236 0 8 chr9 47692712 47692840 -76383332 + (CA)n Simple_repeat Simple_repeat 2 128 0 1 948 1129 69 7 0 chr9 47692856 47693000 -76383172 + B1_Mus2 SINE Alu 2 146 -1 1 948 494 275 122 20 chr9 47693126 47693330 -76382842 + MLT1D LTR MaLR 224 448 -57 1 948 730 218 7 13 chr9 47695182 47695318 -76380854 + B1_Mur1 SINE Alu 2 138 -11 1 948 190 0 0 62 chr9 47695318 47695350 -76380822 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 2 948 730 218 7 13 chr9 47695350 47695362 -76380810 + B1_Mur1 SINE Alu 139 149 0 1 948 1125 62 0 0 chr9 47695399 47695545 -76380627 + (GGAA)n Simple_repeat Simple_repeat 2 147 0 2 948 278 277 158 14 chr9 47696106 47696245 -76379927 - MIRc SINE MIR -73 195 37 2 948 999 135 7 39 chr9 47696725 47696879 -76379293 - B1_Mur4 SINE Alu 0 150 2 2 948 757 288 0 29 chr9 47696904 47697108 -76379064 - B3A SINE B2 0 198 1 2 948 617 219 126 0 chr9 47697158 47697277 -76378895 - B1_Mur4 SINE Alu -7 143 10 2 948 887 310 170 51 chr9 47697321 47697773 -76378399 - MLT2B2 LTR ERVL 0 515 10 2 948 670 253 7 7 chr9 47698112 47698259 -76377913 - B1F SINE Alu -2 147 1 2 948 698 0 12 0 chr9 47698263 47698345 -76377827 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 948 1254 284 14 7 chr9 47698381 47698668 -76377504 - B4A SINE B4 -2 290 2 2 948 2323 136 51 32 chr9 47698806 47699238 -76376934 - RMER10A LTR ERVL -2 440 1 2 948 1222 134 37 0 chr9 47699256 47699443 -76376729 + B2_Mm2 SINE B2 1 194 -1 2 948 926 130 0 18 chr9 47699448 47699612 -76376560 + (GAAAA)n Simple_repeat Simple_repeat 3 163 0 2 948 378 295 170 21 chr9 47701243 47701485 -76374687 + MLT1J1 LTR MaLR 5 290 -154 2 948 248 294 71 56 chr9 47701534 47701660 -76374512 + MLT1A0 LTR MaLR 8 135 -230 2 948 180 213 0 0 chr9 47701902 47701963 -76374209 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 948 346 245 16 35 chr9 47702548 47702654 -76373518 + ID4 SINE ID 2 107 -45 2 948 351 320 91 45 chr9 47702741 47702949 -76373223 + MIR3 SINE MIR 4 234 -42 2 948 715 108 17 0 chr9 47704378 47704498 -76371674 + (TCC)n Simple_repeat Simple_repeat 3 124 0 2 948 796 251 71 0 chr9 47704727 47704938 -76371234 + MIR SINE MIR 37 262 0 2 948 774 218 133 32 chr9 47705384 47705602 -76370570 + MTD LTR MaLR 1 240 -179 2 948 251 232 0 0 chr9 47705601 47705657 -76370515 - MTD LTR MaLR -111 308 253 2 948 513 0 0 0 chr9 47705706 47705763 -76370409 + (CATA)n Simple_repeat Simple_repeat 2 58 0 2 948 375 23 0 0 chr9 47705813 47705857 -76370315 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 948 639 318 81 57 chr9 47706375 47706745 -76369427 - MTEa LTR MaLR 0 379 1 2 948 198 0 0 0 chr9 47707182 47707204 -76368968 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2 948 237 310 134 50 chr9 47707999 47708118 -76368054 - MER5A DNA MER1_type -56 133 5 2 948 211 319 0 55 chr9 47708537 47708610 -76367562 - BC1_Mm scRNA scRNA -69 83 15 2 948 202 339 0 0 chr9 47708633 47708689 -76367483 + L2b LINE L2 3304 3359 -16 2 948 605 306 51 34 chr9 47709127 47709364 -76366808 - MIRc SINE MIR -2 266 26 2 948 318 383 26 43 chr9 47709548 47709780 -76366392 + MIRb SINE MIR 23 250 -18 2 948 228 276 35 0 chr9 47709915 47709973 -76366199 - ORR1E LTR MaLR -260 99 40 2 949 205 348 105 47 chr9 47710226 47710398 -76365774 + MIRb SINE MIR 43 224 -44 2 949 221 217 22 0 chr9 47710657 47710703 -76365469 - L2c LINE L2 -4 3383 3337 2 949 584 311 83 48 chr9 47711647 47711877 -76364295 - B4A SINE B4 0 292 55 2 949 303 93 0 0 chr9 47712311 47712354 -76363818 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 2 949 207 88 0 0 chr9 47712423 47712457 -76363715 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 949 387 0 0 0 chr9 47712458 47712501 -76363671 + (GTGTG)n Simple_repeat Simple_repeat 1 43 0 2 949 207 0 0 0 chr9 47712859 47712882 -76363290 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 949 342 0 0 0 chr9 47713460 47713498 -76362674 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 949 185 130 0 42 chr9 47713536 47713584 -76362588 + (TCTCTG)n Simple_repeat Simple_repeat 1 46 0 2 949 903 296 25 46 chr9 47713590 47713873 -76362299 - B4A SINE B4 -10 282 6 2 949 612 313 74 5 chr9 47713876 47714091 -76362081 - B4A SINE B4 -62 230 1 2 949 329 299 0 0 chr9 47714376 47714473 -76361699 + MER53 DNA hAT 2 98 -95 2 949 1460 200 41 36 chr9 47714494 47714857 -76361315 - ORR1D2 LTR MaLR -3 367 3 2 949 401 361 66 56 chr9 47714895 47715215 -76360957 + LTR82B Low_complexity ERVL 73 395 -435 2 949 338 276 20 10 chr9 47715360 47715459 -76360713 + LTR82B Low_complexity ERVL 605 704 -126 2 949 195 211 75 19 chr9 47715541 47715594 -76360578 + MER5B DNA MER1_type 4 59 -119 2 949 304 253 106 88 chr9 47715670 47715830 -76360342 + RSINE1 SINE B4 3 165 0 2 949 342 324 179 7 chr9 47715877 47716185 -76359987 - L1MB7 LINE L1 -82 6102 5742 2 949 274 224 86 0 chr9 47716229 47716287 -76359885 + MIRm SINE MIR 64 126 -150 2 949 200 203 0 40 chr9 47719007 47719072 -76357100 - MIR SINE MIR -1 267 205 2 949 310 195 11 11 chr9 47719096 47719184 -76356988 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 949 828 265 6 6 chr9 47719214 47719396 -76356776 - B3A SINE B2 -16 182 1 2 949 187 31 30 30 chr9 47719806 47719839 -76356333 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 949 304 164 18 0 chr9 47720398 47720453 -76355719 - HAL1-3A_ME LINE L1 -831 2027 1972 2 949 717 289 133 27 chr9 47720527 47720783 -76355389 - B4 SINE B4 -5 287 5 2 949 813 279 73 4 chr9 47720935 47721180 -76354992 + MamRep605 Unknown Unknown 32 293 -583 2 949 574 308 16 15 chr9 47721934 47722092 -76354080 + ID_B1 SINE B4 86 240 -52 2 949 790 218 153 34 chr9 47722144 47722193 -76353979 - B4 SINE B4 -12 280 233 2 949 2290 138 48 3 chr9 47722193 47722570 -76353602 - ORR1B1 LTR MaLR 0 394 1 2 949 784 218 153 34 chr9 47722570 47722696 -76353476 - B4 SINE B4 -60 232 84 2 949 287 302 147 45 chr9 47723803 47724001 -76352171 + L2a LINE L2 3031 3248 -178 2 949 326 322 90 39 chr9 47724051 47724229 -76351943 - MLT1I LTR MaLR -189 222 36 2 949 682 155 376 6 chr9 47724265 47724427 -76351745 - URR1B DNA MER1_type 0 225 4 2 949 199 290 0 68 chr9 47724490 47724564 -76351608 + L2c LINE L2 3092 3160 -227 2 949 393 58 0 0 chr9 47724837 47724889 -76351283 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 949 388 226 25 10 chr9 47724899 47724993 -76351179 - B3A SINE B2 -70 125 30 2 949 475 177 0 0 chr9 47725259 47725338 -76350834 - ORR1D2 LTR MaLR -289 81 3 2 949 296 299 34 17 chr9 47725339 47725458 -76350714 - RMER15 LTR ERVL -156 419 299 2 949 187 182 0 0 chr9 47726160 47726193 -76349979 + MIR SINE MIR 108 140 -68 2 949 318 148 0 0 chr9 47726265 47726319 -76349853 + (ATG)n Simple_repeat Simple_repeat 1 54 0 2 949 301 225 70 0 chr9 47726547 47726618 -76349554 - ID4 SINE ID -2 81 6 2 949 205 229 21 0 chr9 47726627 47726675 -76349497 + MIR SINE MIR 119 167 -95 2 949 769 265 92 26 chr9 47726738 47727009 -76349163 + B4A SINE B4 3 291 -1 2 949 290 26 26 0 chr9 47727036 47727075 -76349097 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 949 26 64 0 0 chr9 47727282 47727329 -76348843 + AT_rich Low_complexity Low_complexity 1 47 0 2 949 189 0 0 0 chr9 47727428 47727449 -76348723 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 949 180 0 0 0 chr9 47727450 47727470 -76348702 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 2 949 568 280 48 10 chr9 47727471 47727622 -76348550 - B1F SINE Alu -27 284 1 2 949 791 214 91 5 chr9 47728115 47728312 -76347860 + B3 SINE B2 3 216 0 2 949 335 271 48 63 chr9 47728441 47728599 -76347573 - B4A SINE B4 -2 163 2 2 949 364 267 0 19 chr9 47729508 47729611 -76346561 - PB1D10 SINE Alu -15 102 2 2 949 218 325 88 16 chr9 47729679 47729804 -76346368 - MIRm SINE MIR -121 155 22 2 949 372 256 8 78 chr9 47729979 47730108 -76346064 - MIRb SINE MIR -69 199 74 2 949 289 259 12 12 chr9 47730220 47730302 -76345870 + ID4_ SINE ID 2 83 0 2 949 593 233 65 22 chr9 47730450 47730634 -76345538 + ID_B1 SINE B4 2 193 -31 2 949 259 360 12 42 chr9 47730921 47731089 -76345083 + L2c LINE L2 3182 3344 -43 2 949 480 271 44 69 chr9 47731081 47731343 -76344829 + MIR SINE MIR 26 262 0 2 949 246 344 21 0 chr9 47731490 47731586 -76344586 + MIR SINE MIR 46 143 -65 2 949 326 0 68 0 chr9 47732565 47732609 -76343563 + (CAGGG)n Simple_repeat Simple_repeat 1 47 0 2 949 915 260 46 42 chr9 47732776 47733061 -76343111 - B4 SINE B4 -6 286 1 2 949 27 0 0 0 chr9 47734084 47734111 -76342061 + AT_rich Low_complexity Low_complexity 1 27 0 2 949 307 304 45 40 chr9 47734139 47734362 -76341810 - L1MC3 LINE L1 -8 7777 7554 2 949 708 45 0 0 chr9 47734370 47734458 -76341714 + (TG)n Simple_repeat Simple_repeat 2 89 0 2 949 268 294 7 5 chr9 47734458 47734544 -76341628 - PB1D10 SINE Alu -11 109 23 2 949 677 293 40 8 chr9 47735756 47736004 -76340168 - L1ME4a LINE L1 -254 5870 5615 2 949 222 200 0 0 chr9 47736313 47736358 -76339814 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 949 690 272 112 30 chr9 47736376 47736645 -76339527 - B4A SINE B4 0 292 2 2 949 337 292 286 0 chr9 47738994 47739162 -76337010 - ID_B1 SINE B4 -4 220 5 2 949 355 319 82 24 chr9 47739382 47739552 -76336620 + MIRc SINE MIR 61 240 -28 2 949 512 349 29 5 chr9 47739607 47739817 -76336355 - MLT1L LTR MaLR -10 600 386 2 949 239 341 55 0 chr9 47739876 47739967 -76336205 - MLT1L LTR MaLR -319 291 196 2 949 441 0 0 0 chr9 47740325 47740374 -76335798 + (CAA)n Simple_repeat Simple_repeat 2 50 0 3 949 307 107 49 82 chr9 47740375 47740436 -76335736 + HAL1-3A_ME LINE L1 1976 2034 -824 3 949 226 328 68 42 chr9 47740478 47740596 -76335576 - ORR1E LTR MaLR -221 138 18 3 949 471 180 68 1 chr9 47740775 47740872 -76335300 + PB1D9 SINE Alu 13 114 -6 3 949 357 211 40 0 chr9 47741181 47741257 -76334915 - B1F1 SINE Alu -61 88 10 3 949 305 306 26 53 chr9 47741257 47741295 -76334877 - ID_B1 SINE B4 -58 166 56 3 949 305 238 170 9 chr9 47741953 47742059 -76334113 - MIR SINE MIR -34 228 106 3 949 241 282 143 1 chr9 47742258 47742376 -76333796 - MIR SINE MIR -132 136 4 3 949 212 265 72 111 chr9 47742980 47743133 -76333039 - L3 LINE CR1 -2183 2306 2160 3 949 800 200 17 46 chr9 47743438 47743611 -76332561 + B3A SINE B2 2 169 -29 3 949 291 297 131 31 chr9 47743642 47743802 -76332370 - MIRc SINE MIR -59 209 34 3 949 285 325 68 34 chr9 47745679 47745886 -76330286 - B3 SINE B2 0 216 3 3 949 757 244 31 0 chr9 47745729 47745889 -76330283 - RSINE1 SINE B4 0 165 1 3 949 416 235 17 143 chr9 47746369 47746488 -76329684 + PB1D7 SINE Alu 17 120 0 3 949 247 255 18 9 chr9 47746922 47747033 -76329139 + (TCCA)n Simple_repeat Simple_repeat 1 112 0 3 949 198 171 0 0 chr9 47747742 47747783 -76328389 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 949 204 305 73 0 chr9 47747976 47748058 -76328114 + MIR SINE MIR 49 136 -126 3 949 509 292 112 30 chr9 47748228 47748496 -76327676 - L1_Mur3 LINE L1 -132 5748 5457 3 949 236 267 65 65 chr9 47748497 47748589 -76327583 - Tigger7 DNA MER2_type -1896 595 504 3 949 304 248 124 8 chr9 47748646 47748768 -76327404 - L1MD LINE L1 -805 5341 5203 3 949 309 26 0 0 chr9 47749508 47749546 -76326626 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 949 558 0 0 0 chr9 47749546 47749608 -76326564 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 949 1174 68 0 22 chr9 47749617 47749797 -76326375 + (GGGAGA)n Simple_repeat Simple_repeat 1 176 0 3 949 720 285 58 43 chr9 47749798 47750055 -76326117 - B4A SINE B4 -5 287 27 3 949 671 216 193 0 chr9 47750092 47750273 -76325899 - B3 SINE B2 0 216 1 3 949 369 279 27 75 chr9 47750358 47750505 -76325667 - MIRb SINE MIR -77 191 52 3 949 198 412 24 0 chr9 47750616 47750701 -76325471 - MIR SINE MIR -142 120 34 3 949 288 280 261 10 chr9 47751400 47751595 -76324577 - MIRb SINE MIR -12 256 13 3 949 1079 238 56 59 chr9 47752321 47752625 -76323547 + ORR1E LTR MaLR 2 304 -55 3 949 1426 132 22 9 chr9 47752765 47752987 -76323185 + URR1B DNA MER1_type 1 225 0 3 949 255 301 12 88 chr9 47753636 47753716 -76322456 + ID4 SINE ID 7 80 -3 3 949 244 200 29 0 chr9 47754078 47754148 -76322024 + (TGGG)n Simple_repeat Simple_repeat 2 73 0 3 949 533 296 33 61 chr9 47756571 47756751 -76319421 - B4 SINE B4 0 292 118 3 949 313 342 115 71 chr9 47757198 47757951 -76318221 + L2b LINE L2 2577 3370 -5 3 949 198 91 0 0 chr9 47758508 47758541 -76317631 + (T)n Simple_repeat Simple_repeat 1 33 0 3 949 683 218 141 48 chr9 47759127 47759354 -76316818 + B4 SINE B4 4 251 -41 3 949 248 351 20 26 chr9 47760867 47760994 -76315178 - MIRb SINE MIR -26 236 112 3 949 369 248 59 23 chr9 47760997 47761107 -76315065 + PB1D10 SINE Alu 5 119 -1 3 949 5058 272 70 27 chr9 47761453 47763535 -76312637 + L1_Mur3 LINE L1 1325 3495 -2385 3 949 513 217 48 24 chr9 47763556 47763721 -76312451 + L1_Mur3 LINE L1 3047 3215 -2665 3 949 453 242 101 45 chr9 47763729 47763928 -76312244 + L1_Mur3 LINE L1 3505 3714 -2163 3 949 409 217 160 40 chr9 47763929 47764054 -76312118 + RSINE1 SINE B4 26 165 0 3 949 261 210 0 0 chr9 47764054 47764116 -76312056 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 949 1893 275 93 42 chr9 47764160 47765045 -76311127 + L1_Rod LINE L1 4918 5847 0 3 949 582 360 39 29 chr9 47765066 47765449 -76310723 + Lx8 LINE L1 7084 7470 -3 3 949 244 377 119 0 chr9 47765581 47765740 -76310432 + L2b LINE L2 3120 3297 -78 3 949 594 0 0 0 chr9 47766424 47766490 -76309682 + (CCCTAA)n Simple_repeat Simple_repeat 4 69 0 3 949 997 270 104 25 chr9 47766930 47767257 -76308915 + ORR1E LTR MaLR 2 354 -5 3 949 571 266 89 124 chr9 47767643 47768047 -76308125 - MLT1B LTR MaLR 0 390 1 3 949 630 258 129 57 chr9 47768259 47768522 -76307650 - B4A SINE B4 -10 282 1 3 949 480 18 0 0 chr9 47768796 47768853 -76307319 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 949 273 57 0 0 chr9 47769762 47769797 -76306375 + (GGCTG)n Simple_repeat Simple_repeat 4 38 0 3 949 218 308 0 0 chr9 47771298 47771350 -76304822 + (CGTG)n Simple_repeat Simple_repeat 4 55 0 3 949 1006 262 8 37 chr9 47771351 47771593 -76304579 - B4 SINE B4 0 292 58 3 949 585 308 118 130 chr9 47771611 47772044 -76304128 + MLT1G1 LTR MaLR 59 488 -1 3 949 1239 54 0 0 chr9 47772673 47772820 -76303352 - B1_Mus2 SINE Alu 0 147 1 3 949 398 20 20 0 chr9 47772874 47772925 -76303247 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 3 949 519 312 14 0 chr9 47772934 47773078 -76303094 - RSINE1 SINE B4 -17 148 3 3 949 267 241 222 0 chr9 47773652 47773760 -76302412 + L2c LINE L2 3242 3373 -14 3 949 314 221 54 61 chr9 47773980 47774086 -76302086 + PB1D10 SINE Alu 1 106 -43 3 949 309 216 67 13 chr9 47774115 47774190 -76301982 + ID4_ SINE ID 5 83 0 3 949 215 232 0 0 chr9 47774245 47774301 -76301871 + A-rich Low_complexity Low_complexity 4 59 0 3 949 1883 153 68 25 chr9 47774580 47774935 -76301237 + ORR1D1 LTR MaLR 1 370 -4 3 949 1739 305 72 34 chr9 47775065 47775655 -76300517 + ORR1E-int LTR MaLR 916 1528 -52 3 949 794 308 109 27 chr9 47775655 47775985 -76300187 + ORR1E LTR MaLR 1 357 -2 3 949 638 292 52 48 chr9 47775990 47776281 -76299891 + B4A SINE B4 1 292 0 3 949 550 211 6 6 chr9 47776281 47776457 -76299715 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 949 331 202 18 0 chr9 47776474 47776583 -76299589 + (CA)n Simple_repeat Simple_repeat 2 112 0 3 949 673 296 25 10 chr9 47777282 47777483 -76298689 - MIRb SINE MIR -28 240 37 3 949 465 19 0 0 chr9 47778463 47778517 -76297655 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 949 299 217 52 42 chr9 47780259 47780355 -76295817 - MLT1B LTR MaLR 0 390 294 3 949 231 259 24 36 chr9 47781776 47781860 -76294312 + MLT2B2 LTR ERVL 17 99 -457 3 949 1571 253 163 15 chr9 47781959 47782420 -76293752 - Lx8 LINE L1 -2 7471 6943 3 949 345 251 171 60 chr9 47782420 47782619 -76293553 + MLT2B2 LTR ERVL 248 468 -47 3 949 227 371 11 0 chr9 47784965 47785054 -76291118 - 5S rRNA rRNA -31 90 1 3 949 336 329 14 7 chr9 47786680 47786821 -76289351 - L2a LINE L2 -5 3421 3280 3 949 311 308 198 17 chr9 47786845 47787017 -76289155 - MIR SINE MIR -21 241 39 3 949 261 98 0 0 chr9 47787043 47787084 -76289088 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 949 258 196 107 0 chr9 47787099 47787155 -76289017 - ID2 SINE ID -19 64 3 3 949 190 244 0 0 chr9 47787456 47787497 -76288675 - L2a LINE L2 -526 2893 2853 3 949 199 364 92 58 chr9 47787569 47787896 -76288276 - L2a LINE L2 -713 2706 2369 3 949 1705 193 35 9 chr9 47787956 47788482 -76287690 - RCHARR1 DNA MER1_type 0 974 340 3 949 306 0 0 0 chr9 47788484 47788518 -76287654 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 949 563 241 13 78 chr9 47788587 47788740 -76287432 - B4A SINE B4 -149 143 1 3 949 684 320 109 11 chr9 47788740 47789023 -76287149 - RCHARR1 DNA MER1_type -624 350 40 3 949 740 159 0 124 chr9 47790172 47790358 -76285814 + URR1A DNA MER1_type 64 226 0 3 949 1268 211 107 40 chr9 47791185 47791399 -76284773 - ORR1D2 LTR MaLR 0 370 127 3 949 1747 139 157 3 chr9 47791399 47791717 -76284455 + ORR1B2 LTR MaLR 1 367 0 3 949 1268 211 107 40 chr9 47791717 47791848 -76284324 - ORR1D2 LTR MaLR -244 126 2 3 949 815 236 39 136 chr9 47791853 47792101 -76284071 + B4A SINE B4 41 272 -20 3 949 327 130 0 0 chr9 47792101 47792155 -76284017 + (CAGG)n Simple_repeat Simple_repeat 1 54 0 3 949 815 236 39 136 chr9 47792155 47792185 -76283987 + B4A SINE B4 273 292 0 3 949 663 225 0 4 chr9 47792189 47792449 -76283723 + (CA)n Simple_repeat Simple_repeat 1 258 0 3 949 2196 121 16 3 chr9 47793029 47793352 -76282820 + ORR1A2 LTR MaLR 1 327 0 3 949 226 307 68 0 chr9 47794870 47794958 -76281214 + MIR SINE MIR 81 174 -88 3 949 1369 227 44 7 chr9 47795727 47796002 -76280170 + B4 SINE B4 1 285 -7 3 949 516 72 0 0 chr9 47796021 47796090 -76280082 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 949 186 71 0 0 chr9 47796303 47796331 -76279841 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 949 383 282 25 8 chr9 47796756 47796874 -76279298 - PB1 SINE Alu -7 120 1 3 949 237 311 83 90 chr9 47797111 47797256 -76278916 + MLT1A LTR MaLR 9 152 -222 3 949 866 273 38 17 chr9 47797390 47797681 -76278491 - Lx8 LINE L1 -60 7413 7117 3 949 17281 23 3 0 chr9 47798059 47800705 -76275467 - L1Md_A LINE L1 -2 6580 3926 3 949 2975 0 0 0 chr9 47800703 47801035 -76275137 + L1Md_A LINE L1 3595 3926 -1957 3 949 1374 57 0 0 chr9 47801053 47801229 -76274943 + (TC)n Simple_repeat Simple_repeat 1 176 0 3 949 473 276 158 4 chr9 47801301 47801534 -76274638 + B4 SINE B4 1 269 -23 3 949 712 222 20 77 chr9 47802091 47802286 -76273886 + B3 SINE B2 33 216 0 3 949 1532 258 41 26 chr9 47802645 47803107 -76273065 - Zaphod DNA Tip100 -3395 636 168 3 949 482 46 15 0 chr9 47803589 47803654 -76272518 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 3 949 227 197 16 0 chr9 47803654 47803686 -76272486 + (CCTA)n Simple_repeat Simple_repeat 2 34 0 3 949 1329 73 0 0 chr9 47803686 47803864 -76272308 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 3 949 227 197 16 0 chr9 47803864 47803892 -76272280 + (CCTA)n Simple_repeat Simple_repeat 2 29 0 3 949 270 250 31 20 chr9 47804130 47804228 -76271944 - HAL1 LINE L1 -1439 1068 970 4 949 315 0 0 0 chr9 47804268 47804303 -76271869 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 949 404 336 41 20 chr9 47804445 47804591 -76271581 - HAL1 LINE L1 -1852 655 507 4 949 234 357 78 34 chr9 47804677 47804883 -76271289 - HAL1 LINE L1 -2137 370 156 4 949 502 369 8 37 chr9 47804936 47805178 -76270994 + B4A SINE B4 2 236 -56 4 949 422 246 6 0 chr9 47805228 47805395 -76270777 + (CA)n Simple_repeat Simple_repeat 1 168 0 4 949 626 189 6 0 chr9 47805448 47805623 -76270549 + (CA)n Simple_repeat Simple_repeat 2 177 0 4 949 252 261 91 0 chr9 47806303 47806391 -76269781 + PB1D9 SINE Alu 1 96 -24 4 949 375 83 0 0 chr9 47806614 47806674 -76269498 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 949 396 111 0 0 chr9 47806777 47806849 -76269323 + (TCTG)n Simple_repeat Simple_repeat 2 73 0 4 949 1090 337 60 24 chr9 47806867 47807535 -76268637 - L1MC4 LINE L1 -587 7455 6764 4 949 243 237 89 75 chr9 47807542 47807688 -76268484 + L1MC4a LINE L1 5908 6055 -1827 4 949 1108 245 35 41 chr9 47809127 47809442 -76266730 + Lx8 LINE L1 6312 6624 -849 4 949 552 314 18 92 chr9 47809456 47809737 -76266435 + Lx8 LINE L1 7158 7417 -56 4 949 768 176 46 0 chr9 47809738 47809869 -76266303 + B1_Mur3 SINE Alu 2 138 -11 4 949 186 43 0 0 chr9 47809869 47809892 -76266280 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 949 22 70 0 0 chr9 47809961 47810004 -76266168 + AT_rich Low_complexity Low_complexity 1 43 0 4 949 370 270 8 57 chr9 47810116 47810238 -76265934 + L1MCa LINE L1 406 521 -5987 4 949 396 103 0 0 chr9 47810313 47810371 -76265801 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 949 594 292 96 58 chr9 47810897 47811242 -76264930 - L1MC4 LINE L1 -2213 5669 5312 4 949 911 176 0 0 chr9 47811899 47812047 -76264125 - B1_Mur4 SINE Alu -1 149 2 4 949 328 241 0 35 chr9 47812200 47812265 -76263907 - MLT1D LTR MaLR -3 502 440 4 949 347 272 65 14 chr9 47812265 47812403 -76263769 + B1F2 SINE Alu 1 145 -4 4 949 328 241 0 35 chr9 47812403 47812423 -76263749 - MLT1D LTR MaLR -66 439 420 4 949 1541 293 91 109 chr9 47812603 47813572 -76262600 - L1M4c LINE L1 -5381 1003 53 4 949 236 192 0 0 chr9 47813775 47813827 -76262345 + T-rich Low_complexity Low_complexity 1 52 0 4 949 205 207 54 14 chr9 47813888 47814035 -76262137 + (TATATG)n Simple_repeat Simple_repeat 3 155 0 4 949 413 282 9 18 chr9 47814540 47814652 -76261520 - ORR1E LTR MaLR -248 111 1 4 949 303 362 105 73 chr9 47814717 47815003 -76261169 + MER21B LTR ERV1 39 333 -530 4 949 7323 205 69 37 chr9 47815183 47816911 -76259261 - Lx7 LINE L1 0 7696 5913 4 949 681 135 0 0 chr9 47816909 47817005 -76259167 - L1_Mur3 LINE L1 -4024 1856 1761 4 949 1722 76 0 0 chr9 47817000 47817224 -76258948 - Lx LINE L1 -622 6032 5809 4 949 4249 102 33 19 chr9 47817224 47817741 -76258431 + Lx LINE L1 6010 6519 -135 4 949 180 77 0 0 chr9 47817741 47817767 -76258405 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 4 949 4249 102 33 19 chr9 47817767 47817885 -76258287 + Lx LINE L1 6520 6653 -1 4 949 249 108 0 0 chr9 47817886 47817923 -76258249 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 4 949 4084 190 68 39 chr9 47817923 47819365 -76256807 - L1_Mur3 LINE L1 -4105 1775 284 4 949 242 302 49 44 chr9 47819405 47819609 -76256563 - L1MC4 LINE L1 -4087 2128 1924 4 949 2219 91 3 0 chr9 47819699 47820017 -76256155 + ORR1A2 LTR MaLR 1 319 -8 4 949 380 229 128 56 chr9 47820034 47820049 -76256123 - ID_B1 SINE B4 -2 222 89 4 949 431 202 100 55 chr9 47820049 47820159 -76256013 - B1F2 SINE Alu -27 122 8 4 949 505 242 69 22 chr9 47820391 47820537 -76255635 - Lx9 LINE L1 -7 7637 7490 4 949 381 22 0 0 chr9 47820537 47820583 -76255589 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 949 505 242 69 22 chr9 47820583 47820668 -76255504 - Lx9 LINE L1 -155 7489 7396 4 949 641 315 51 65 chr9 47820753 47821123 -76255049 + MTE-int LTR MaLR 736 1100 -480 4 949 297 0 0 0 chr9 47821584 47821617 -76254555 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 949 531 0 0 0 chr9 47821617 47821675 -76254497 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 949 657 260 23 6 chr9 47821761 47821935 -76254237 + MTE2b LTR MaLR 58 234 -145 4 949 972 72 26 13 chr9 47822107 47822261 -76253911 + (GGAGA)n Simple_repeat Simple_repeat 2 157 0 4 949 334 256 85 0 chr9 47822416 47822498 -76253674 + MTE2b LTR MaLR 230 318 -61 4 949 1901 120 86 3 chr9 47822591 47822892 -76253280 - ORR1A3 LTR MaLR 0 326 1 4 949 670 284 75 55 chr9 47823241 47823587 -76252585 - ORR1E LTR MaLR -6 353 1 4 949 1725 202 33 46 chr9 47823794 47824184 -76251988 + MTD LTR MaLR 26 410 -9 4 949 636 255 143 61 chr9 47824185 47824405 -76251767 + MTD LTR MaLR 117 360 -59 4 949 1381 196 28 160 chr9 47824405 47824836 -76251336 + ORR1D1 LTR MaLR 1 374 0 4 949 636 255 143 61 chr9 47824836 47824895 -76251277 + MTD LTR MaLR 361 419 0 4 949 420 111 0 0 chr9 47825651 47825714 -76250458 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 949 3057 289 113 27 chr9 47825803 47826921 -76249251 - Lx8 LINE L1 -62 7411 6198 4 949 594 0 0 0 chr9 47826933 47826999 -76249173 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 949 427 324 49 55 chr9 47826999 47827182 -76248990 - ID_B1 SINE B4 -41 183 2 4 949 1596 176 66 6 chr9 47827367 47827699 -76248473 - ORR1B2 LTR MaLR -8 359 8 4 949 950 272 37 62 chr9 47827734 47828127 -76248045 + MTE2a LTR MaLR 1 361 -18 4 949 384 295 96 102 chr9 47828329 47828672 -76247500 - MLT1D LTR MaLR -153 352 12 4 949 300 53 0 0 chr9 47829759 47829797 -76246375 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4 949 296 287 42 25 chr9 47829885 47830003 -76246169 - ID_B1 SINE B4 -62 162 43 4 949 1167 255 64 56 chr9 47831519 47831893 -76244279 - MTEa LTR MaLR -2 377 1 4 949 387 275 99 0 chr9 47831893 47832064 -76244108 - L1MEc LINE L1 -5954 446 259 4 949 409 229 10 0 chr9 47832234 47832330 -76243842 + PB1D10 SINE Alu 4 100 -17 4 949 402 250 25 41 chr9 47832644 47832765 -76243407 - ID_B1 SINE B4 -8 216 98 4 949 646 190 0 32 chr9 47833066 47833251 -76242921 + CT-rich Low_complexity Low_complexity 2 180 0 4 949 729 257 82 8 chr9 47833478 47833721 -76242451 - MamRep434 DNA TcMar -164 262 2 4 949 294 326 92 14 chr9 47833802 47834020 -76242152 - MIRb SINE MIR -15 253 19 4 949 390 286 55 50 chr9 47834721 47834920 -76241252 - L2a LINE L2 0 3426 3227 4 949 1040 107 0 0 chr9 47835157 47835316 -76240856 + RMER6C LTR ERVK 521 679 -11 4 949 339 165 55 0 chr9 47835543 47835652 -76240520 + G-rich Low_complexity Low_complexity 2 116 0 4 949 689 274 13 0 chr9 47835865 47836022 -76240150 + RSINE1 SINE B4 2 160 -5 4 949 259 307 40 7 chr9 47836119 47836270 -76239902 + L1M6 LINE L1 1779 1934 -4562 4 949 776 294 102 28 chr9 47836423 47836707 -76239465 - MTE2b LTR MaLR -12 367 63 4 949 1306 282 117 32 chr9 47836739 47837556 -76238616 - L1MA9 LINE L1 -70 6242 5321 4 949 976 278 111 83 chr9 47837628 47837763 -76238409 - L1MA9 LINE L1 -983 5157 5014 4 949 275 0 29 0 chr9 47837763 47837798 -76238374 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 949 976 278 111 83 chr9 47837798 47838193 -76237979 - L1MA9 LINE L1 -1127 5013 4636 4 949 607 229 129 96 chr9 47838193 47838473 -76237699 - B4A SINE B4 -2 290 2 4 949 976 278 111 83 chr9 47838473 47838799 -76237373 - L1MA9 LINE L1 -1505 4635 4276 4 949 985 152 22 0 chr9 47838860 47839038 -76237134 + URR1A DNA MER1_type 45 226 0 4 949 537 257 143 0 chr9 47839039 47839249 -76236923 - L1MA9 LINE L1 -1901 4239 4000 4 949 260 286 0 0 chr9 47839246 47839309 -76236863 - L1_Mur2 LINE L1 -2075 3802 3740 4 949 764 21 11 0 chr9 47839310 47839404 -76236768 + (TC)n Simple_repeat Simple_repeat 2 96 0 4 949 250 208 0 14 chr9 47839544 47839617 -76236555 - L1MA9 LINE L1 -2357 3786 3715 4 949 589 150 7 7 chr9 47839699 47839847 -76236325 + CT-rich Low_complexity Low_complexity 1 148 0 4 949 387 0 0 0 chr9 47839847 47839890 -76236282 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 118 1136 295 91 37 chr9 47840576 47841383 -76234789 + L1M3 LINE L1 2667 3516 -2624 4 950 679 315 69 8 chr9 47841383 47841645 -76234527 + B4 SINE B4 1 278 -14 4 950 1006 272 30 112 chr9 47841657 47842059 -76234113 - MTE2a LTR MaLR -5 374 6 4 950 4405 195 52 56 chr9 47842125 47842553 -76233619 + Lx5 LINE L1 6015 6439 -611 4 950 1177 55 14 0 chr9 47842553 47842698 -76233474 - B1_Mm SINE Alu 0 147 1 4 950 4405 195 52 56 chr9 47842698 47843145 -76233027 + Lx5 LINE L1 6440 6898 -152 4 950 495 0 0 0 chr9 47843145 47843200 -76232972 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 950 4405 195 52 56 chr9 47843200 47843359 -76232813 + Lx5 LINE L1 6899 7046 -4 4 950 432 0 0 0 chr9 47843614 47843662 -76232510 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 950 412 290 49 82 chr9 47843662 47843906 -76232266 - Lx9 LINE L1 -184 7460 7225 4 950 730 285 0 34 chr9 47843919 47844126 -76232046 - Lx9 LINE L1 -480 7164 6965 4 950 309 292 0 40 chr9 47844481 47844581 -76231591 - MLT1A0 LTR MaLR 0 365 270 4 950 272 158 18 0 chr9 47844743 47844800 -76231372 + CT-rich Low_complexity Low_complexity 1 58 0 4 950 482 151 11 11 chr9 47844800 47844887 -76231285 - ID_B1 SINE B4 -16 208 122 4 950 731 212 0 5 chr9 47845140 47845368 -76230804 + (CA)n Simple_repeat Simple_repeat 1 226 0 4 950 222 134 0 95 chr9 47845523 47845597 -76230575 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 4 950 739 31 20 0 chr9 47846112 47846210 -76229962 + (GA)n Simple_repeat Simple_repeat 2 101 0 4 950 3526 32 0 2 chr9 47846696 47847097 -76229075 + MTB LTR MaLR 1 400 0 4 950 422 244 119 24 chr9 47847196 47847208 -76228964 - B1_Mus2 SINE Alu 0 147 138 4 950 195 42 0 0 chr9 47847208 47847232 -76228940 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 950 422 244 119 24 chr9 47847232 47847345 -76228827 - B1_Mus2 SINE Alu -10 137 10 4 950 513 47 0 0 chr9 47847355 47847419 -76228753 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 950 458 290 9 0 chr9 47847430 47847537 -76228635 - B1_Mur3 SINE Alu -40 109 2 4 950 1653 212 59 44 chr9 47847963 47848368 -76227804 - MTD LTR MaLR -8 411 1 4 950 271 244 34 17 chr9 47848699 47848816 -76227356 + L1MEe LINE L1 1916 2034 -4815 4 950 366 276 46 46 chr9 47848906 47849081 -76227091 + MusHAL1 LINE L1 342 516 -2196 4 950 440 299 56 0 chr9 47849081 47849225 -76226947 + RSINE1 SINE B4 8 159 -6 4 950 350 306 75 57 chr9 47849270 47849543 -76226629 + L1MEe LINE L1 2182 2658 -4191 4 950 821 169 3 95 chr9 47849800 47850009 -76226163 - Lx3C LINE L1 -105 6876 6674 4 950 456 224 195 13 chr9 47849977 47850126 -76226046 + Lx3C LINE L1 6824 6999 -1 4 950 21 36 0 0 chr9 47850447 47850475 -76225697 + AT_rich Low_complexity Low_complexity 1 28 0 4 950 856 328 86 50 chr9 47850490 47850730 -76225442 + L1MEe LINE L1 2934 3182 -3663 4 950 315 0 0 0 chr9 47850730 47850765 -76225407 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 950 856 328 86 50 chr9 47850765 47851307 -76224865 + L1MEe LINE L1 3183 3744 -3101 4 950 420 323 0 52 chr9 47851321 47851455 -76224717 + ID_B1 SINE B4 97 223 -1 5 950 4103 290 83 34 chr9 47851455 47852874 -76223298 + L1MEe LINE L1 3713 5195 -1650 4 950 1877 119 134 60 chr9 47852874 47853239 -76222933 - ORR1B1 LTR MaLR 0 394 3 5 950 4103 297 85 41 chr9 47853239 47854615 -76221557 + L1MEe LINE L1 5161 6582 0 4 950 312 48 0 0 chr9 47854634 47854676 -76221496 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 950 333 0 0 0 chr9 47854676 47854712 -76221460 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 950 222 37 0 0 chr9 47854972 47854999 -76221173 + (TAA)n Simple_repeat Simple_repeat 1 27 0 5 950 569 276 0 7 chr9 47855436 47855571 -76220601 - RSINE1 SINE B4 -29 136 3 5 950 760 312 76 24 chr9 47855724 47856147 -76220025 + L1M5 LINE L1 5329 5773 -421 5 950 1560 243 23 6 chr9 47856151 47856503 -76219669 - MTE2b LTR MaLR -4 375 18 5 950 443 268 143 25 chr9 47856928 47857131 -76219041 + L1M4b LINE L1 2 228 -7106 5 950 344 297 100 50 chr9 47857379 47857719 -76218453 - L2a LINE L2 -108 3318 2962 5 950 1058 316 211 9 chr9 47858089 47858929 -76217243 - L2a LINE L2 -972 2447 1439 5 950 241 299 0 13 chr9 47858934 47859012 -76217160 - MLT1J LTR MaLR 0 512 436 5 950 413 176 101 9 chr9 47859067 47859176 -76216996 - MTD LTR MaLR 0 419 301 5 950 691 212 73 0 chr9 47859239 47859376 -76216796 + B1_Mus2 SINE Alu 1 147 0 5 950 358 303 106 50 chr9 47859751 47860195 -76215977 + L1M4b LINE L1 4904 5372 -1634 5 950 1183 248 19 123 chr9 47860252 47860666 -76215506 - MTE2a LTR MaLR -8 371 1 5 950 4190 104 13 10 chr9 47860688 47861287 -76214885 - MT2B LTR ERVL 0 601 1 5 950 212 86 29 0 chr9 47862468 47862503 -76213669 + (GGGTG)n Simple_repeat Simple_repeat 4 39 0 5 950 293 328 52 0 chr9 47862676 47862792 -76213380 - MIRb SINE MIR -135 141 20 5 950 381 316 32 53 chr9 47864049 47864236 -76211936 - MLT1C LTR MaLR -2 465 283 5 950 1137 102 0 0 chr9 47864266 47864432 -76211740 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 5 950 362 331 22 7 chr9 47864519 47864656 -76211516 - B1F SINE Alu -9 140 2 5 950 1035 270 136 6 chr9 47864788 47865105 -76211067 - MTEb LTR MaLR -2 377 20 5 950 236 302 96 24 chr9 47868543 47868709 -76207463 + MIRb SINE MIR 34 211 -57 5 950 860 321 48 0 chr9 47868822 47869090 -76207082 - B4A SINE B4 -4 288 8 5 950 985 299 80 10 chr9 47870357 47870671 -76205501 + ORR1E LTR MaLR 4 339 -20 5 950 225 65 0 0 chr9 47870671 47870702 -76205470 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 950 2257 120 27 38 chr9 47871508 47871879 -76204293 + ORR1B2 LTR MaLR 1 367 0 5 950 984 232 63 2 chr9 47871989 47872307 -76203865 + MER33 DNA MER1_type 5 302 -22 5 950 24 0 0 0 chr9 47872316 47872340 -76203832 + AT_rich Low_complexity Low_complexity 1 24 0 5 950 1432 310 85 2 chr9 47872401 47872918 -76203254 - Lx8 LINE L1 -94 7379 6820 5 950 196 200 60 0 chr9 47873088 47873138 -76203034 - MIRc SINE MIR -109 159 107 5 950 244 378 42 11 chr9 47873189 47873379 -76202793 + MIR SINE MIR 36 231 -31 5 950 523 298 79 7 chr9 47874399 47874551 -76201621 + RSINE1 SINE B4 2 164 -1 5 950 231 36 0 0 chr9 47874583 47874611 -76201561 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 5 950 297 0 0 0 chr9 47875512 47875545 -76200627 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 950 226 250 13 13 chr9 47875918 47875995 -76200177 + (TTCA)n Simple_repeat Simple_repeat 3 79 0 5 950 237 139 0 0 chr9 47876842 47876885 -76199287 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 950 1337 97 0 21 chr9 47877107 47877296 -76198876 - B2_Mm2 SINE B2 -9 186 2 5 950 1608 305 83 17 chr9 47877304 47878108 -76198064 + Lx8 LINE L1 5054 5920 -1553 5 950 346 357 121 14 chr9 47878694 47878975 -76197197 + MLT1I LTR MaLR 86 396 -15 5 950 186 43 0 0 chr9 47879153 47879176 -76196996 + (TTC)n Simple_repeat Simple_repeat 2 24 0 5 950 22 56 0 0 chr9 47879292 47879328 -76196844 + AT_rich Low_complexity Low_complexity 1 36 0 5 950 603 192 58 0 chr9 47879344 47879464 -76196708 + RSINE1 SINE B4 11 137 -28 5 950 190 279 89 118 chr9 47879739 47880019 -76196153 - L2c LINE L2 0 3387 3116 5 950 322 332 84 34 chr9 47880648 47881031 -76195141 - L2c LINE L2 -738 2681 2280 5 950 549 0 0 0 chr9 47881080 47881141 -76195031 + (GGGGA)n Simple_repeat Simple_repeat 4 64 0 5 950 3498 30 2 0 chr9 47881534 47881929 -76194243 + MTA_Mm LTR MaLR 1 396 0 5 950 313 278 84 43 chr9 47882837 47882991 -76193181 - MIRb SINE MIR -98 164 14 5 950 661 296 5 19 chr9 47883104 47883314 -76192858 + B4A SINE B4 83 289 -3 5 950 234 0 0 0 chr9 47883330 47883356 -76192816 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 950 270 0 0 0 chr9 47883382 47883412 -76192760 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 5 950 273 254 17 0 chr9 47883581 47883640 -76192532 + G-rich Low_complexity Low_complexity 1 60 0 5 950 500 59 47 0 chr9 47883640 47883725 -76192447 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 950 2995 25 50 0 chr9 47884282 47884645 -76191527 + L1Md_F2 LINE L1 6202 6582 0 5 950 844 227 113 9 chr9 47884749 47884980 -76191192 - ORR1E LTR MaLR -104 255 1 5 950 1033 247 66 11 chr9 47885533 47885819 -76190353 - RMER15 LTR ERVL 0 575 274 5 950 2212 99 12 58 chr9 47886685 47887028 -76189144 + ORR1A2 LTR MaLR 1 327 0 5 950 360 64 0 0 chr9 47888274 47888321 -76187851 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 5 950 419 104 18 119 chr9 47888321 47888421 -76187751 - Lx LINE L1 -33 6621 6534 5 950 330 296 88 62 chr9 47888867 47889093 -76187079 - MLT1G3 LTR MaLR -31 548 314 5 950 23 0 0 0 chr9 47889563 47889586 -76186586 + AT_rich Low_complexity Low_complexity 1 23 0 5 950 952 288 22 25 chr9 47889595 47889958 -76186214 - L1M2 LINE L1 -1583 4560 4199 5 950 345 159 0 0 chr9 47891941 47892004 -76184168 + CT-rich Low_complexity Low_complexity 1 63 0 5 950 32 0 0 0 chr9 47892272 47892304 -76183868 + AT_rich Low_complexity Low_complexity 1 32 0 5 950 188 259 97 44 chr9 47892578 47892691 -76183481 - MIRc SINE MIR -34 234 116 5 950 575 265 11 27 chr9 47893099 47893285 -76182887 - L1MC2 LINE L1 -299 6045 5863 5 950 348 286 12 6 chr9 47893344 47893513 -76182659 + CT-rich Low_complexity Low_complexity 1 170 0 5 950 351 281 15 30 chr9 47893683 47893815 -76182357 - L1MC1 LINE L1 -17 6316 6187 5 950 1071 264 90 26 chr9 47896456 47896799 -76179373 + MLT1A1 LTR MaLR 34 398 -10 5 950 462 63 38 0 chr9 47898300 47898379 -76177793 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 950 2675 178 57 39 chr9 47898380 47899126 -76177046 + RMER13B LTR ERVK 5 878 -30 5 950 263 279 63 95 chr9 47899140 47899235 -76176937 + MTEa LTR MaLR 1 92 -287 5 950 597 106 56 15 chr9 47899328 47899600 -76176572 + (TG)n Simple_repeat Simple_repeat 1 283 0 5 950 371 320 44 69 chr9 47900059 47900334 -76175838 - ORR1E LTR MaLR -17 342 75 5 950 308 269 121 9 chr9 47900381 47900497 -76175675 - MLT2B2 LTR ERVL -425 129 1 5 950 207 367 61 30 chr9 47900577 47900709 -76175463 + MIRb SINE MIR 55 190 -78 5 950 350 358 24 0 chr9 47901193 47901316 -76174856 + MLT1F2 LTR MaLR 8 133 -427 5 950 857 307 28 28 chr9 47901316 47901604 -76174568 + B4A SINE B4 1 288 -4 5 950 394 231 0 14 chr9 47901653 47901798 -76174374 + (CA)n Simple_repeat Simple_repeat 2 144 0 5 950 851 276 45 90 chr9 47901851 47902206 -76173966 + MLT1F2 LTR MaLR 218 556 -4 5 950 361 264 96 19 chr9 47902240 47902360 -76173812 - PB1D10 SINE Alu -18 131 1 5 950 417 39 0 0 chr9 47903189 47903240 -76172932 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 950 512 30 15 0 chr9 47903241 47903307 -76172865 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 950 218 255 0 0 chr9 47903912 47903959 -76172213 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 5 950 488 169 0 0 chr9 47904218 47904295 -76171877 - B4A SINE B4 -2 290 214 5 950 336 256 0 0 chr9 47904296 47904374 -76171798 - B3 SINE B2 0 216 139 5 950 194 0 39 0 chr9 47904391 47904417 -76171755 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 950 4528 52 2 0 chr9 47904678 47905230 -76170942 - L1Md_F2 LINE L1 -12 6570 6018 5 950 416 252 60 10 chr9 47905230 47905324 -76170848 - B3 SINE B2 -116 100 1 5 950 653 292 25 54 chr9 47905324 47905560 -76170612 - B4A SINE B4 -62 230 2 5 950 484 286 171 67 chr9 47905790 47906086 -76170086 - ORR1E LTR MaLR -18 360 44 5 950 21 36 0 0 chr9 47906853 47906881 -76169291 + AT_rich Low_complexity Low_complexity 1 28 0 5 950 515 56 0 14 chr9 47907471 47907543 -76168629 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 950 355 330 51 44 chr9 47907568 47907841 -76168331 - B4A SINE B4 -17 275 1 5 950 357 43 0 0 chr9 47908593 47908640 -76167532 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 950 222 0 0 73 chr9 47908675 47908716 -76167456 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 950 1432 206 170 18 chr9 47908717 47909053 -76167119 + MTD LTR MaLR 19 405 -14 5 950 354 98 0 0 chr9 47909215 47909266 -76166906 + (CTA)n Simple_repeat Simple_repeat 1 51 0 5 950 315 305 69 23 chr9 47909284 47909415 -76166757 - RSINE1 SINE B4 -17 148 12 5 950 338 305 42 0 chr9 47909424 47909542 -76166630 + LTR85a LTR Gypsy? 60 182 -520 5 950 188 67 0 32 chr9 47909856 47909887 -76166285 + (GGGGA)n Simple_repeat Simple_repeat 2 31 0 5 950 837 252 43 17 chr9 47910299 47910529 -76165643 + MER47A DNA MER2_type 77 312 -54 5 950 552 309 19 13 chr9 47910557 47910711 -76165461 - RSINE1 SINE B4 0 165 11 5 950 2577 97 114 28 chr9 47910721 47911158 -76165014 - IAPLTR2_Mm LTR ERVK 0 475 1 5 950 192 125 0 0 chr9 47911210 47911242 -76164930 + (CAT)n Simple_repeat Simple_repeat 1 32 0 6 950 398 353 134 0 chr9 47911261 47911462 -76164710 - MIR SINE MIR -32 230 3 6 950 617 343 65 69 chr9 47911467 47911899 -76164273 + HAL1 LINE L1 977 1406 -1101 6 950 272 391 107 23 chr9 47912161 47912470 -76163702 - MLT1J1 LTR MaLR -27 417 83 6 950 477 0 0 0 chr9 47912593 47912646 -76163526 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 950 496 306 40 54 chr9 47913040 47913316 -76162856 + HAL1 LINE L1 2233 2504 -3 6 950 601 198 99 119 chr9 47913500 47913701 -76162471 + B3A SINE B2 2 198 0 6 950 450 0 0 0 chr9 47914423 47914473 -76161699 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 950 218 263 19 48 chr9 47914517 47914621 -76161551 + CT-rich Low_complexity Low_complexity 3 103 0 6 950 465 322 99 13 chr9 47915746 47916007 -76160165 + L1ME3A LINE L1 5265 5549 -629 6 950 428 304 201 19 chr9 47916093 47916327 -76159845 + L1ME3A LINE L1 5697 5965 -275 6 950 239 252 112 43 chr9 47916451 47916567 -76159605 + L1ME3A LINE L1 6108 6231 -9 6 950 293 237 0 50 chr9 47916625 47916705 -76159467 - PB1D10 SINE Alu 0 117 42 6 950 420 20 0 0 chr9 47916827 47916876 -76159296 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 6 950 423 0 0 0 chr9 47918082 47918129 -76158043 + (TAA)n Simple_repeat Simple_repeat 1 47 0 6 950 587 227 23 15 chr9 47918132 47918262 -76157910 + B3 SINE B2 86 216 0 6 950 297 0 0 0 chr9 47918809 47918842 -76157330 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 950 414 0 0 0 chr9 47918842 47918887 -76157285 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 950 911 178 48 11 chr9 47918902 47919089 -76157083 + B2_Mm2 SINE B2 1 194 -1 6 950 375 23 0 0 chr9 47919281 47919325 -76156847 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 950 214 397 8 0 chr9 47920437 47920563 -76155609 + CT-rich Low_complexity Low_complexity 1 127 0 6 950 219 240 0 20 chr9 47920602 47920653 -76155519 + CT-rich Low_complexity Low_complexity 2 51 0 6 950 220 109 35 52 chr9 47922906 47922964 -76153208 + A-rich Low_complexity Low_complexity 5 61 0 6 950 400 318 58 26 chr9 47923077 47923232 -76152940 - B4 SINE B4 -126 166 7 6 950 216 337 33 0 chr9 47923318 47923410 -76152762 + L2a LINE L2 2826 2920 -499 6 950 237 320 197 42 chr9 47923532 47923842 -76152330 + L2a LINE L2 3062 3419 -7 6 950 2443 47 0 45 chr9 47924080 47924412 -76151760 + L1_Mus1 LINE L1 6250 6566 -1 6 950 214 178 0 0 chr9 47924416 47924461 -76151711 + A-rich Low_complexity Low_complexity 1 45 0 6 950 489 76 0 0 chr9 47924461 47924527 -76151645 + (GGAGAA)n Simple_repeat Simple_repeat 3 68 0 6 950 1266 90 0 0 chr9 47924527 47924705 -76151467 + (GAA)n Simple_repeat Simple_repeat 3 180 0 6 950 185 225 68 40 chr9 47925583 47925657 -76150515 + L3 LINE CR1 2776 2851 -1638 6 950 200 341 64 32 chr9 47926549 47926643 -76149529 - MIRb SINE MIR -31 237 141 6 950 258 56 0 0 chr9 47926930 47926966 -76149206 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 950 203 228 68 47 chr9 47927087 47927176 -76148996 - MIRb SINE MIR -79 189 85 6 950 242 302 50 40 chr9 47927561 47927661 -76148511 + MIRc SINE MIR 81 181 -87 6 950 408 132 34 57 chr9 47928205 47928382 -76147790 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 6 950 587 276 5 115 chr9 47928429 47928621 -76147551 - B4A SINE B4 -109 183 13 6 950 224 186 17 0 chr9 47929721 47929780 -76146392 + (CATA)n Simple_repeat Simple_repeat 4 63 0 6 950 567 0 0 0 chr9 47929806 47929869 -76146303 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 6 950 380 287 32 24 chr9 47929967 47930092 -76146080 - RCHARR1 DNA MER1_type -18 956 831 6 950 893 204 32 42 chr9 47930108 47930297 -76145875 + B3 SINE B2 30 216 0 6 950 2788 271 53 25 chr9 47930235 47931119 -76145053 - RCHARR1 DNA MER1_type -65 909 1 6 950 1093 231 80 29 chr9 47932547 47932616 -76143556 - B4 SINE B4 -1 291 223 6 950 462 103 0 0 chr9 47932616 47932694 -76143478 + (TTCA)n Simple_repeat Simple_repeat 4 81 0 6 950 1093 231 80 29 chr9 47932694 47932900 -76143272 - B4 SINE B4 -70 222 2 6 950 310 271 11 23 chr9 47933108 47933195 -76142977 + GA-rich Low_complexity Low_complexity 4 89 0 6 950 811 112 7 7 chr9 47933369 47933504 -76142668 + (TCC)n Simple_repeat Simple_repeat 2 136 0 6 950 463 156 32 53 chr9 47933504 47933599 -76142573 - B2_Mm2 SINE B2 0 195 103 6 950 1259 171 5 9 chr9 47934484 47934697 -76141475 - URR1A DNA MER1_type -14 212 1 6 950 7439 75 11 1 chr9 47935638 47936587 -76139585 - L1_Mus4 LINE L1 -1 6635 5678 6 950 331 293 62 25 chr9 47936728 47936893 -76139279 + B3 SINE B2 20 193 0 6 950 217 396 10 0 chr9 47936953 47937049 -76139123 + MIRb SINE MIR 91 187 -81 6 950 382 348 77 48 chr9 47937621 47938101 -76138071 + L2b LINE L2 2681 3169 -206 6 950 512 292 66 25 chr9 47938305 47938502 -76137670 + MLT1H LTR MaLR 305 509 -40 6 950 940 227 66 44 chr9 47938752 47939010 -76137162 + B4A SINE B4 3 269 -23 6 950 470 103 13 0 chr9 47939010 47939088 -76137084 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 950 940 227 66 44 chr9 47939088 47939101 -76137071 + B4A SINE B4 270 280 -12 6 950 367 299 77 85 chr9 47939132 47939391 -76136781 + Lx8 LINE L1 7215 7471 -2 6 950 252 381 20 10 chr9 47939432 47939530 -76136642 + L2b LINE L2 3327 3425 -1 6 950 1080 249 62 81 chr9 47940645 47941016 -76135156 - MTE2a LTR MaLR -13 366 3 6 950 185 226 111 16 chr9 47941767 47941830 -76134342 - MIR SINE MIR -122 140 72 6 950 216 0 0 0 chr9 47941863 47941887 -76134285 + (A)n Simple_repeat Simple_repeat 1 24 0 6 950 314 272 12 12 chr9 47942850 47942932 -76133240 - ID4_ SINE ID 0 83 2 6 950 256 309 37 82 chr9 47944911 47945154 -76131018 - RMER17C LTR ERVK -90 320 89 6 950 205 303 329 0 chr9 47947138 47947293 -76128879 + MIRb SINE MIR 3 208 -60 6 950 375 319 66 89 chr9 47947409 47947667 -76128505 - MLT1J1 LTR MaLR -152 292 41 6 950 186 211 0 0 chr9 47947731 47947769 -76128403 - L2c LINE L2 -64 3323 3286 6 950 22 0 0 0 chr9 47947862 47947884 -76128288 + AT_rich Low_complexity Low_complexity 1 22 0 6 950 593 146 299 18 chr9 47948071 47948238 -76127934 - B3 SINE B2 -1 215 2 6 950 298 242 126 55 chr9 47949347 47949474 -76126698 + MLT1K LTR MaLR 403 538 -57 6 950 1204 269 72 25 chr9 47949871 47950233 -76125939 - MTEa LTR MaLR 0 379 1 6 950 287 315 64 95 chr9 47950537 47950832 -76125340 + ORR1E LTR MaLR 1 286 -73 6 950 1849 226 134 18 chr9 47952014 47952506 -76123666 + RMER15 LTR ERVL 27 575 0 6 950 327 258 31 8 chr9 47953027 47953156 -76123016 + MER63D DNA AcHobo 61 192 -869 6 950 198 0 0 0 chr9 47953170 47953192 -76122980 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 950 672 285 30 16 chr9 47953197 47953399 -76122773 - B4A SINE B4 -6 286 81 6 950 789 11 0 0 chr9 47953547 47953637 -76122535 + (GAA)n Simple_repeat Simple_repeat 2 91 0 6 950 231 308 0 13 chr9 47953855 47953934 -76122238 + Charlie4a DNA MER1_type 116 193 -315 6 950 1228 61 0 0 chr9 47953934 47954081 -76122091 + B1_Mus2 SINE Alu 1 147 0 6 950 204 225 0 0 chr9 47954081 47954121 -76122051 + A-rich Low_complexity Low_complexity 4 43 0 6 950 542 279 159 7 chr9 47954121 47954392 -76121780 + Charlie4a DNA MER1_type 177 488 -20 6 950 228 67 0 0 chr9 47954396 47954426 -76121746 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 950 267 203 0 0 chr9 47955330 47955389 -76120783 + T-rich Low_complexity Low_complexity 1 59 0 6 950 819 216 6 36 chr9 47956062 47956230 -76119942 + B4A SINE B4 3 165 -127 6 950 456 304 8 16 chr9 47956227 47956354 -76119818 - ORR1E LTR MaLR -226 133 8 6 950 402 157 0 0 chr9 47956437 47956520 -76119652 + (CAG)n Simple_repeat Simple_repeat 1 83 0 6 950 207 0 0 0 chr9 47956537 47956560 -76119612 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 950 560 240 118 59 chr9 47957157 47957361 -76118811 + B3 SINE B2 1 216 0 6 950 769 293 14 10 chr9 47958866 47959073 -76117099 - B3 SINE B2 0 216 9 6 950 981 336 191 35 chr9 47959711 47959906 -76116266 + L2a LINE L2 1696 1890 -1529 6 950 946 242 179 32 chr9 47959906 47960214 -76115958 + ORR1E LTR MaLR 5 357 -2 6 950 981 336 191 35 chr9 47960214 47960939 -76115233 + L2a LINE L2 1891 2729 -690 6 950 2524 89 3 0 chr9 47960939 47961265 -76114907 + ORR1A2 LTR MaLR 1 327 0 6 950 981 342 132 52 chr9 47961265 47961881 -76114291 + L2a LINE L2 2730 3409 -17 6 950 994 68 0 57 chr9 47965142 47965283 -76110889 - ORR1B1 LTR MaLR 0 394 262 6 950 426 331 98 23 chr9 47965282 47965455 -76110717 - MLT1D LTR MaLR -319 186 1 6 950 227 287 152 57 chr9 47966531 47966792 -76109380 + L2a LINE L2 2683 2963 -456 6 950 2871 35 105 0 chr9 47966792 47967164 -76109008 - IAPLTR2a LTR ERVK 0 411 1 6 950 227 245 444 67 chr9 47967164 47967284 -76108888 + L2a LINE L2 2964 3134 -292 6 950 299 314 56 19 chr9 47968444 47968551 -76107621 - MIRc SINE MIR -15 253 143 6 950 249 252 3 32 chr9 47969880 47969963 -76106209 - MIRb SINE MIR -10 252 172 6 950 306 305 0 31 chr9 47970447 47970545 -76105627 + LTR33B LTR ERVL 401 495 -8 6 950 244 333 92 61 chr9 47970550 47970681 -76105491 - MIR SINE MIR -118 150 16 6 950 624 255 6 31 chr9 47971897 47972059 -76104113 - RSINE1 SINE B4 -3 162 5 6 118 1731 206 148 71 chr9 47972094 47972589 -76103583 - MT2A LTR ERVL 0 533 1 6 951 1034 295 79 12 chr9 47972927 47973256 -76102916 + MLT1I LTR MaLR 60 410 -1 6 951 548 283 25 38 chr9 47973267 47973425 -76102747 - MIRb SINE MIR -4 264 109 6 951 543 259 67 15 chr9 47973679 47973957 -76102215 + MTD LTR MaLR 5 407 -14 6 951 207 0 0 0 chr9 47974121 47974144 -76102028 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 951 2329 108 29 80 chr9 47974494 47974908 -76101264 - RLTR9C LTR ERVK 0 393 1 6 951 515 268 152 17 chr9 47976162 47976386 -76099786 + MER2 DNA MER2_type 91 344 -1 6 951 369 274 67 68 chr9 47976479 47976725 -76099447 - MIRb SINE MIR -1 267 12 6 951 222 62 0 0 chr9 47976726 47976758 -76099414 + (TTTTTA)n Simple_repeat Simple_repeat 6 37 0 6 951 1146 75 0 7 chr9 47977447 47977595 -76098577 - B1_Mm SINE Alu 0 147 1 6 951 221 309 71 29 chr9 47977906 47977976 -76098196 - MIRc SINE MIR -148 120 48 7 951 427 352 16 0 chr9 47978628 47978756 -76097416 - RSINE1 SINE B4 -31 134 5 7 951 2017 148 101 0 chr9 47978776 47979134 -76097038 + ORR1B1 LTR MaLR 1 394 0 7 951 903 282 97 40 chr9 47979227 47979651 -76096521 - MLT1D LTR MaLR -1 504 57 7 951 194 277 43 0 chr9 47979789 47979836 -76096336 - L2b LINE L2 -2 3373 3325 7 951 581 290 78 17 chr9 47980156 47980335 -76095837 + MER58A DNA MER1_type 19 208 -16 7 951 187 54 0 51 chr9 47980341 47980380 -76095792 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 7 951 1137 288 82 33 chr9 47980577 47980607 -76095565 - RMER5 LTR ERV1 -16 518 492 7 951 198 0 0 0 chr9 47980607 47980629 -76095543 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7 951 1137 288 82 33 chr9 47980629 47981022 -76095150 - RMER5 LTR ERV1 -43 491 74 7 951 249 260 51 25 chr9 47983146 47983225 -76092947 + MLT1G1 LTR MaLR 228 308 -271 7 951 21 0 0 0 chr9 47983512 47983533 -76092639 + AT_rich Low_complexity Low_complexity 1 21 0 7 951 328 202 187 22 chr9 47983951 47984042 -76092130 + PB1D10 SINE Alu 2 107 -10 7 951 518 329 103 44 chr9 47984170 47984491 -76091681 - MLT1C LTR MaLR -2 465 126 7 951 449 110 14 0 chr9 47984560 47984633 -76091539 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 7 951 704 215 22 15 chr9 47984689 47984826 -76091346 - RSINE1 SINE B4 -26 139 2 7 951 603 221 227 0 chr9 47984977 47985149 -76091023 - B3 SINE B2 -5 211 1 7 951 194 385 104 32 chr9 47985194 47985414 -76090758 - MIRb SINE MIR 0 268 33 7 951 338 277 124 36 chr9 47986163 47986329 -76089843 - MIRb SINE MIR -20 248 34 7 951 555 301 139 5 chr9 47986828 47987015 -76089157 - MER20 DNA MER1_type -1 218 7 7 951 428 336 20 35 chr9 47987032 47987062 -76089110 - ID_B1 SINE B4 -44 248 171 7 951 526 290 8 0 chr9 47987062 47987186 -76088986 - B1F SINE Alu -20 129 5 7 951 428 336 20 35 chr9 47987186 47987228 -76088944 - ID_B1 SINE B4 -44 170 53 7 951 539 117 0 11 chr9 47987378 47987473 -76088699 + (GGA)n Simple_repeat Simple_repeat 2 95 0 7 951 27 0 0 0 chr9 47987760 47987787 -76088385 + AT_rich Low_complexity Low_complexity 1 27 0 7 951 225 24 23 45 chr9 47988802 47988846 -76087326 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 951 198 0 0 0 chr9 47989632 47989654 -76086518 + (TC)n Simple_repeat Simple_repeat 2 23 0 7 951 207 0 0 0 chr9 47989654 47989676 -76086496 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 951 596 276 97 62 chr9 47989717 47990069 -76086103 - Lx8 LINE L1 -136 7337 6974 7 951 821 238 16 16 chr9 47990517 47990709 -76085463 - B3A SINE B2 -6 192 1 7 951 302 0 26 0 chr9 47990718 47990756 -76085416 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 951 193 267 24 16 chr9 47990805 47990879 -76085293 - L2b LINE L2 -16 3371 3297 7 951 443 18 18 0 chr9 47991522 47991578 -76084594 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 951 324 0 0 0 chr9 47991730 47991766 -76084406 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 951 189 264 0 0 chr9 47993782 47993854 -76082318 + GA-rich Low_complexity Low_complexity 2 73 0 7 951 306 295 15 83 chr9 47993900 47994033 -76082139 - ORR1E LTR MaLR -235 124 1 7 951 236 338 27 0 chr9 47994482 47994556 -76081616 - ID4_ SINE ID -2 81 6 7 951 351 0 0 0 chr9 47994648 47994687 -76081485 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 951 927 212 6 9 chr9 47994753 47994950 -76081222 + RMER1A Other Other 270 593 -473 7 951 341 168 0 36 chr9 47994976 47995087 -76081085 + (TG)n Simple_repeat Simple_repeat 1 107 0 7 951 328 200 8 30 chr9 47995130 47995264 -76080908 + (TG)n Simple_repeat Simple_repeat 1 131 0 7 951 379 256 109 65 chr9 47995283 47995296 -76080876 - RSINE1 SINE B4 0 165 153 7 951 204 40 0 0 chr9 47995296 47995321 -76080851 + (GGGAGA)n Simple_repeat Simple_repeat 5 29 0 7 951 379 256 109 65 chr9 47995321 47995336 -76080836 - RSINE1 SINE B4 -13 152 142 7 951 257 89 0 22 chr9 47995336 47995382 -76080790 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 951 379 256 109 65 chr9 47995382 47995490 -76080682 - RSINE1 SINE B4 -24 141 22 7 951 957 246 14 19 chr9 47995538 47995749 -76080423 + B3 SINE B2 1 210 -6 7 951 514 309 7 0 chr9 47996241 47996380 -76079792 + B1F2 SINE Alu 3 142 -7 7 951 1177 275 176 38 chr9 47996709 47997242 -76078930 + RMER1B Other Other 1 525 -541 7 951 2839 189 169 105 chr9 47997242 47998064 -76078108 + RMER1A Other Other 144 1018 -12 7 951 567 0 0 0 chr9 47998064 47998127 -76078045 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 951 931 157 7 0 chr9 47998489 47998636 -76077536 + B1_Mus1 SINE Alu 1 148 0 7 951 337 325 87 0 chr9 47999390 47999596 -76076576 + L1MEg LINE L1 1034 1257 -4827 7 951 374 315 21 14 chr9 48000135 48000280 -76075892 - L1ME4a LINE L1 -239 5885 5740 1 951 360 306 197 0 chr9 48000619 48000766 -76075406 - B4A SINE B4 0 292 117 2 951 347 200 17 0 chr9 48000973 48001033 -76075139 - ID_B1 SINE B4 -6 218 158 3 951 644 250 62 0 chr9 48001069 48001229 -76074943 - ORR1D2 LTR MaLR -200 170 1 4 951 264 313 117 36 chr9 48001244 48001466 -76074706 - L1MC LINE L1 -2327 5555 5316 5 951 478 335 76 4 chr9 48001543 48001768 -76074404 + MER46C DNA MER2_type 42 282 -56 6 951 243 0 0 0 chr9 48001870 48001897 -76074275 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 951 286 277 21 21 chr9 48002247 48002350 -76073822 - L1M4 LINE L1 -1140 5006 4904 8 951 333 343 60 50 chr9 48002468 48002686 -76073486 - L1ME4a LINE L1 -669 5571 5352 1 951 435 305 181 41 chr9 48002920 48003248 -76072924 + MLT1A LTR MaLR 1 454 -13 9 951 417 297 26 26 chr9 48003446 48003560 -76072612 + B1F SINE Alu 36 149 0 1 951 523 322 35 0 chr9 48004577 48004751 -76071421 + B3A SINE B2 3 182 -16 1 951 476 308 68 23 chr9 48006833 48006966 -76069206 + RSINE1 SINE B4 27 165 0 1 951 622 12 37 0 chr9 48006973 48007055 -76069117 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 1 951 438 349 45 20 chr9 48007124 48007395 -76068777 - L2a LINE L2 -276 3150 2878 1 951 3521 8 13 3 chr9 48009179 48009571 -76066601 + MTA_Mm LTR MaLR 1 396 0 1 951 25 0 0 0 chr9 48010072 48010097 -76066075 + AT_rich Low_complexity Low_complexity 1 25 0 1 951 716 226 10 70 chr9 48010642 48010842 -76065330 + B3A SINE B2 7 194 -4 1 951 606 317 48 19 chr9 48010990 48011469 -76064703 + L1M2 LINE L1 1851 2666 -3883 1 951 426 239 136 84 chr9 48011626 48011781 -76064391 + RSINE1 SINE B4 3 165 0 1 951 262 318 30 15 chr9 48011934 48012068 -76064104 + L1_Mur3 LINE L1 1553 1688 -4192 2 951 384 22 0 0 chr9 48012069 48012114 -76064058 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 951 297 0 0 0 chr9 48012114 48012146 -76064026 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 951 699 330 68 26 chr9 48012152 48012607 -76063565 + L1M2 LINE L1 3239 3712 -3133 1 951 362 285 29 0 chr9 48012663 48012800 -76063372 + L1_Mur3 LINE L1 3186 3326 -2554 2 951 1055 59 0 0 chr9 48012801 48012936 -76063236 + B1_Mus1 SINE Alu 14 148 0 2 951 180 217 0 0 chr9 48012937 48012983 -76063189 + A-rich Low_complexity Low_complexity 1 46 0 2 951 689 316 93 39 chr9 48012984 48013549 -76062623 + L1M2 LINE L1 4028 4658 -2187 1 951 235 235 0 29 chr9 48013889 48013959 -76062213 + L1M2 LINE L1 4674 4741 -2104 1 951 240 317 150 14 chr9 48013985 48014132 -76062040 + L1MD LINE L1 4046 4212 -1934 2 951 244 250 42 0 chr9 48014181 48014253 -76061919 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 2 951 219 270 67 11 chr9 48014356 48014446 -76061726 - L2 LINE L2 -666 2753 2659 2 951 250 276 20 20 chr9 48015376 48015476 -76060696 + MER33 DNA MER1_type 173 272 -52 2 951 407 105 44 66 chr9 48015638 48015821 -76060351 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 3 951 408 209 0 0 chr9 48015820 48015997 -76060175 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 951 249 57 0 0 chr9 48015996 48016031 -76060141 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 951 320 282 117 0 chr9 48016071 48016174 -76059998 - B4 SINE B4 -150 142 28 3 951 195 236 68 27 chr9 48016205 48016279 -76059893 + L2c LINE L2 3213 3289 -98 3 951 278 269 102 37 chr9 48016279 48016387 -76059785 + MTE2b LTR MaLR 253 367 -12 3 951 625 227 23 8 chr9 48017520 48017653 -76058519 - B1F SINE Alu -8 141 7 3 951 366 201 52 136 chr9 48017653 48017675 -76058497 - B4A SINE B4 -73 219 78 3 951 816 157 11 17 chr9 48017858 48018039 -76058133 + (TTCA)n Simple_repeat Simple_repeat 1 180 0 3 951 218 195 0 0 chr9 48019539 48019580 -76056592 + A-rich Low_complexity Low_complexity 1 41 0 3 951 369 0 0 0 chr9 48020054 48020095 -76056077 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 951 668 233 27 10 chr9 48020179 48020345 -76055827 - B4A SINE B4 -122 170 1 4 951 591 304 99 70 chr9 48020457 48020941 -76055231 - RLTR11A2 LTR ERVK -27 500 3 4 951 855 172 157 27 chr9 48021400 48021585 -76054587 - B3 SINE B2 -7 209 1 4 951 4278 171 19 53 chr9 48021610 48022435 -76053737 - Lx5 LINE L1 0 7050 6254 4 951 366 374 48 39 chr9 48022499 48022705 -76053467 + MLT1I LTR MaLR 12 219 -192 4 951 221 333 64 72 chr9 48022964 48023315 -76052857 - L2c LINE L2 -16 3359 3021 4 951 189 195 0 0 chr9 48023315 48023356 -76052816 + GA-rich Low_complexity Low_complexity 1 41 0 4 951 937 262 37 19 chr9 48023401 48023669 -76052503 - B4A SINE B4 -18 274 2 4 951 684 0 0 0 chr9 48023699 48023775 -76052397 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 951 450 0 0 0 chr9 48024927 48024977 -76051195 + (CTG)n Simple_repeat Simple_repeat 1 50 0 5 951 207 0 0 0 chr9 48025270 48025293 -76050879 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 5 951 558 218 45 119 chr9 48025406 48025583 -76050589 + RSINE1 SINE B4 2 165 0 5 951 674 24 0 12 chr9 48025600 48025685 -76050487 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 5 951 1326 78 0 0 chr9 48025686 48025866 -76050306 + (TAGG)n Simple_repeat Simple_repeat 1 180 0 5 951 603 0 0 0 chr9 48025866 48025933 -76050239 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 5 951 350 348 68 0 chr9 48026373 48026534 -76049638 + MIR SINE MIR 40 211 -51 5 951 347 259 13 38 chr9 48027369 48027505 -76048667 + B3A SINE B2 3 216 0 5 951 450 250 26 18 chr9 48027545 48027659 -76048513 + B1F SINE Alu 33 147 -2 5 951 193 404 18 18 chr9 48027726 48027837 -76048335 + MIRb SINE MIR 138 248 -20 5 951 22 0 0 0 chr9 48028005 48028027 -76048145 + AT_rich Low_complexity Low_complexity 1 22 0 6 951 306 0 0 0 chr9 48028088 48028122 -76048050 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 951 216 149 0 0 chr9 48028235 48028282 -76047890 + (T)n Simple_repeat Simple_repeat 1 47 0 6 951 705 11 21 11 chr9 48028813 48028908 -76047264 + (TC)n Simple_repeat Simple_repeat 2 97 0 6 951 224 148 0 53 chr9 48030897 48030954 -76045218 + T-rich Low_complexity Low_complexity 1 54 0 6 951 369 0 0 0 chr9 48030977 48031018 -76045154 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 951 1448 70 11 0 chr9 48032293 48032478 -76043694 - B2_Mm1t SINE B2 -6 187 1 6 951 198 0 0 0 chr9 48032528 48032550 -76043622 + (A)n Simple_repeat Simple_repeat 1 22 0 6 951 248 376 103 0 chr9 48032858 48032975 -76043197 - MIRb SINE MIR -35 233 105 6 951 845 235 49 0 chr9 48033040 48033223 -76042949 - MTEb LTR MaLR -2 377 186 6 951 377 335 75 35 chr9 48034809 48034982 -76041190 + MLT1A1 LTR MaLR 1 180 -228 7 951 588 320 82 12 chr9 48035608 48035864 -76040308 + L2 LINE L2 2182 2455 -964 7 951 548 334 106 79 chr9 48035886 48036416 -76039756 - MLT2B3 LTR ERVL -10 544 1 7 951 273 324 104 14 chr9 48036516 48036534 -76039638 - B4A SINE B4 -56 236 138 7 951 696 186 8 0 chr9 48036534 48036652 -76039520 - PB1D9 SINE Alu 0 120 2 7 951 382 322 187 10 chr9 48036720 48037009 -76039163 + L2 LINE L2 2612 2951 -468 7 951 471 180 10 17 chr9 48037329 48037632 -76038540 + (CA)n Simple_repeat Simple_repeat 1 300 0 7 951 229 295 159 31 chr9 48037896 48038036 -76038136 - MIRb SINE MIR -64 204 40 7 951 350 224 176 77 chr9 48040930 48041061 -76035111 - L2c LINE L2 -1 3425 3269 7 951 772 249 46 17 chr9 48042034 48042271 -76033901 - L1MA5 LINE L1 -2 6298 6055 7 951 316 345 42 0 chr9 48042284 48042403 -76033769 - MIRc SINE MIR -135 133 10 7 951 270 0 0 0 chr9 48043173 48043203 -76032969 + (TCC)n Simple_repeat Simple_repeat 3 32 0 8 951 3245 48 2 17 chr9 48044157 48044559 -76031613 - MTA_Mm LTR MaLR 0 396 1 8 951 246 389 81 8 chr9 48045587 48045823 -76030349 + L3 LINE CR1 4156 4408 -81 8 951 2020 154 20 12 chr9 48047668 48048010 -76028162 + ORR1B1 LTR MaLR 41 385 -9 8 951 506 215 79 27 chr9 48048056 48048205 -76027967 + B3 SINE B2 2 161 -34 8 951 1223 95 44 16 chr9 48048205 48048387 -76027785 + B2_Mm2 SINE B2 1 187 -8 8 951 465 232 110 77 chr9 48048387 48048419 -76027753 + B2_Mm2 SINE B2 162 189 -6 8 951 248 295 32 97 chr9 48048838 48048962 -76027210 - L2c LINE L2 -10 3377 3262 8 951 204 125 0 0 chr9 48049089 48049121 -76027051 + (CACAA)n Simple_repeat Simple_repeat 2 33 0 8 951 406 289 120 16 chr9 48049492 48049742 -76026430 - L1MA8 LINE L1 -6 6285 6010 8 951 412 280 27 27 chr9 48051200 48051310 -76024862 - PB1D10 SINE Alu -6 111 2 8 951 303 307 103 26 chr9 48051401 48051595 -76024577 + L1MEf LINE L1 1919 2127 -4073 9 951 223 314 0 0 chr9 48052079 48052130 -76024042 + polypyrimidine Low_complexity Low_complexity 3 53 0 9 951 742 252 0 0 chr9 48052693 48052832 -76023340 + ID_B1 SINE B4 82 220 -4 9 951 850 276 101 26 chr9 48052836 48053104 -76023068 + B4A SINE B4 3 290 -2 9 951 414 0 0 0 chr9 48053110 48053156 -76023016 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 951 745 174 36 0 chr9 48054332 48054470 -76021702 + B1_Mur2 SINE Alu 1 143 -6 9 951 458 193 0 0 chr9 48054629 48054712 -76021460 + MIR3 SINE MIR 111 193 -15 9 951 180 0 0 0 chr9 48054896 48054916 -76021256 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 9 951 258 170 64 0 chr9 48055855 48055902 -76020270 + MIRb SINE MIR 63 112 -156 9 951 201 235 113 75 chr9 48055964 48056070 -76020102 - MIR SINE MIR -118 144 35 9 951 347 247 151 0 chr9 48056172 48056265 -76019907 + PB1D7 SINE Alu 5 111 -9 1 951 729 112 30 7 chr9 48056265 48056400 -76019772 + (CATA)n Simple_repeat Simple_repeat 1 138 0 1 951 457 120 12 12 chr9 48056618 48056702 -76019470 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 951 452 306 88 29 chr9 48056738 48057011 -76019161 - B4 SINE B4 -3 289 1 1 951 286 224 88 15 chr9 48057974 48058042 -76018130 + MIRb SINE MIR 98 170 -98 9 951 526 203 167 30 chr9 48058048 48058180 -76017992 + RSINE1 SINE B4 8 157 -8 1 951 740 171 89 141 chr9 48059729 48059920 -76016252 - URR1A DNA MER1_type -45 181 1 1 951 424 86 14 14 chr9 48060000 48060071 -76016101 + (CCCCCT)n Simple_repeat Simple_repeat 3 73 0 1 951 667 86 58 0 chr9 48061911 48062050 -76014122 + (TG)n Simple_repeat Simple_repeat 2 148 0 1 951 567 279 86 49 chr9 48062203 48062365 -76013807 - B4A SINE B4 -60 232 65 1 951 533 222 17 17 chr9 48062685 48062804 -76013368 - PB1D9 SINE Alu 0 120 2 1 951 428 222 57 41 chr9 48062813 48062935 -76013237 + L2b LINE L2 2802 2925 -494 1 951 248 288 37 12 chr9 48063216 48063297 -76012875 + L2b LINE L2 3226 3308 -67 1 951 463 292 22 7 chr9 48063938 48064076 -76012096 - B1F SINE Alu -1 148 9 1 951 865 255 109 18 chr9 48064070 48064346 -76011826 + MER119 DNA MER1_type 189 489 -94 1 951 754 276 17 61 chr9 48064423 48064654 -76011518 - B4A SINE B4 -71 221 1 1 951 896 168 6 0 chr9 48064663 48064836 -76011336 + GA-rich Low_complexity Low_complexity 2 175 0 1 951 1279 36 6 6 chr9 48064836 48065002 -76011170 + (GAGAA)n Simple_repeat Simple_repeat 2 167 0 1 951 554 307 67 49 chr9 48066843 48067246 -76008926 - MLT2B1 LTR ERVL -58 509 4 1 951 275 318 71 0 chr9 48068317 48068402 -76007770 + L4 LINE RTE 1622 1712 -317 1 951 230 309 20 20 chr9 48070585 48070684 -76005488 + GA-rich Low_complexity Low_complexity 4 102 0 1 951 463 274 44 0 chr9 48071784 48071897 -76004275 + MLT1I LTR MaLR 290 407 -4 1 951 363 23 0 0 chr9 48072167 48072211 -76003961 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 951 664 249 98 5 chr9 48072368 48072582 -76003590 - L1MA9 LINE L1 -35 6277 6044 1 951 2852 198 29 36 chr9 48072597 48073207 -76002965 - RMER19C LTR ERVK -12 599 1 1 951 762 303 49 55 chr9 48073977 48074305 -76001867 + Charlie19a DNA Charlie 61 386 0 1 951 1098 238 101 54 chr9 48076486 48076802 -75999370 - MLT1A0 LTR MaLR -2 363 33 1 951 447 52 0 0 chr9 48077200 48077258 -75998914 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 951 345 319 62 33 chr9 48077508 48077719 -75998453 + MLT1A1 LTR MaLR 1 217 -191 1 951 1908 170 8 85 chr9 48077846 48078244 -75997928 + ORR1B2 LTR MaLR 1 367 0 1 951 494 196 29 29 chr9 48078765 48078870 -75997302 - ID_B1 SINE B4 0 224 120 1 951 255 197 40 53 chr9 48079540 48079615 -75996557 + PB1D10 SINE Alu 39 112 -5 1 951 28 0 0 0 chr9 48079878 48079906 -75996266 + AT_rich Low_complexity Low_complexity 1 28 0 1 951 313 164 55 0 chr9 48079949 48080004 -75996168 - HAL1-3A_ME LINE L1 -825 2033 1976 1 951 465 135 0 0 chr9 48080004 48080093 -75996079 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 951 512 226 152 129 chr9 48080093 48080271 -75995901 - B3A SINE B2 -16 182 1 1 951 794 224 64 60 chr9 48080459 48080763 -75995409 - ORR1C2 LTR MaLR 0 384 16 1 951 4829 19 0 0 chr9 48080763 48081303 -75994869 - L1Md_A LINE L1 0 6582 6043 1 951 451 191 8 115 chr9 48081303 48081333 -75994839 - ORR1C2 LTR MaLR -348 30 1 1 951 660 87 0 0 chr9 48082035 48082127 -75994045 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 1 951 397 216 68 6 chr9 48082146 48082309 -75993863 + (TAGA)n Simple_repeat Simple_repeat 3 175 0 1 951 326 333 73 66 chr9 48082345 48082647 -75993525 + L3 LINE CR1 1024 1327 -3162 1 951 341 329 200 4 chr9 48082673 48082923 -75993249 + L2a LINE L2 1746 2044 -1375 1 951 264 359 92 51 chr9 48082968 48083185 -75992987 - MamRep38 DNA hAT -30 265 40 1 951 253 243 187 37 chr9 48083483 48083590 -75992582 - RMER21A LTR ERV1 -347 600 478 1 951 22 35 0 0 chr9 48083916 48083945 -75992227 + AT_rich Low_complexity Low_complexity 1 29 0 1 951 370 155 0 0 chr9 48084306 48084364 -75991808 + tRNA-Ala-GCY_ tRNA tRNA 2 59 -16 1 951 783 329 129 38 chr9 48084430 48084828 -75991344 + L2a LINE L2 2014 2464 -955 1 951 431 278 60 40 chr9 48084828 48085027 -75991145 - B3 SINE B2 -10 206 4 1 951 783 329 129 38 chr9 48085027 48085240 -75990932 + L2a LINE L2 2465 2681 -738 1 951 316 325 53 14 chr9 48085338 48085547 -75990625 + L2a LINE L2 2926 3142 -284 1 951 946 301 148 31 chr9 48085550 48085807 -75990365 - MLT1D LTR MaLR -7 498 196 1 951 188 35 35 0 chr9 48085807 48085836 -75990336 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 951 1141 52 0 0 chr9 48085836 48085972 -75990200 - B1_Mus1 SINE Alu -11 137 2 1 951 946 301 148 31 chr9 48085972 48086159 -75990013 - MLT1D LTR MaLR -310 195 2 1 951 200 338 0 14 chr9 48086319 48086388 -75989784 + L2a LINE L2 3355 3422 -4 1 951 994 227 14 14 chr9 48086648 48086858 -75989314 - B3 SINE B2 -6 210 1 1 951 904 260 9 5 chr9 48086998 48087218 -75988954 + ID_B1 SINE B4 2 222 -2 1 951 1039 330 84 17 chr9 48087369 48087843 -75988329 + MLT1J-int LTR MaLR 6 511 -876 1 951 906 250 35 74 chr9 48088622 48088907 -75987265 + B4 SINE B4 1 274 -18 1 951 479 97 0 0 chr9 48088956 48089018 -75987154 - B3 SINE B2 -154 62 1 1 951 326 271 0 30 chr9 48089018 48089109 -75987063 - B4 SINE B4 -203 89 2 1 951 23 33 0 0 chr9 48089287 48089317 -75986855 + AT_rich Low_complexity Low_complexity 1 30 0 1 951 267 188 51 0 chr9 48089583 48089700 -75986472 + (TA)n Simple_repeat Simple_repeat 1 123 0 1 951 566 235 51 36 chr9 48089716 48089853 -75986319 + B1F SINE Alu 10 148 -1 1 951 342 0 0 0 chr9 48092420 48092458 -75983714 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 951 390 204 0 0 chr9 48092755 48092848 -75983324 + (ATG)n Simple_repeat Simple_repeat 3 95 0 1 951 186 360 48 61 chr9 48092850 48093056 -75983116 - MIRb SINE MIR -1 261 55 1 951 1042 87 0 0 chr9 48093099 48093237 -75982935 + B1_Mus1 SINE Alu 11 148 0 1 951 183 42 0 0 chr9 48093245 48093269 -75982903 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 951 218 298 0 42 chr9 48093978 48094097 -75982075 + A-rich Low_complexity Low_complexity 1 114 0 1 951 2440 95 52 0 chr9 48094177 48094524 -75981648 + Lx LINE L1 6290 6654 0 1 951 924 64 39 78 chr9 48094678 48094831 -75981341 + B1_Mm SINE Alu 1 147 0 1 951 243 266 47 0 chr9 48095095 48095159 -75981013 - MTEb LTR MaLR -19 360 294 1 951 370 351 43 34 chr9 48095428 48095637 -75980535 - LTR16A LTR ERVL 0 451 241 1 951 256 250 0 104 chr9 48096084 48096209 -75979963 - L1MD2 LINE L1 -133 6226 6115 1 951 878 303 22 47 chr9 48096236 48096638 -75979534 - L1MD2 LINE L1 -382 5977 5586 1 951 1021 242 4 59 chr9 48096643 48096898 -75979274 + B4A SINE B4 1 241 -51 1 951 531 0 0 0 chr9 48096923 48096982 -75979190 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 951 1546 267 129 39 chr9 48096985 48097573 -75978599 - Lx9 LINE L1 -222 7422 6782 1 951 487 269 12 76 chr9 48097710 48097928 -75978244 + B3A SINE B2 14 214 -2 1 951 267 262 152 19 chr9 48098214 48098319 -75977853 + L1MEf LINE L1 1439 1557 -4643 1 951 565 284 108 37 chr9 48098326 48098567 -75977605 - MER73 LTR ERVL -1 643 386 1 951 439 308 25 25 chr9 48099518 48099681 -75976491 + RSINE1 SINE B4 3 165 0 1 951 284 143 18 0 chr9 48099818 48099874 -75976298 + C-rich Low_complexity Low_complexity 6 62 0 1 951 701 53 11 0 chr9 48099874 48099968 -75976204 + (TC)n Simple_repeat Simple_repeat 1 95 0 1 951 233 304 72 0 chr9 48100093 48100162 -75976010 + MIR SINE MIR 74 147 -115 1 951 887 224 45 0 chr9 48101259 48101460 -75974712 - B3 SINE B2 -5 211 2 1 951 574 239 80 0 chr9 48102467 48102605 -75973567 + B1F SINE Alu 1 149 0 1 951 1184 36 0 0 chr9 48102750 48102887 -75973285 + B1_Mus1 SINE Alu 2 138 -10 1 951 207 0 0 0 chr9 48102887 48102910 -75973262 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 951 254 148 56 0 chr9 48103132 48103186 -75972986 - Lx6 LINE L1 -6 7454 7398 1 118 1564 249 117 24 chr9 48103208 48103716 -75972456 - Lx5 LINE L1 -24 7436 6506 1 952 2769 188 83 23 chr9 48103733 48104686 -75971486 - Lx5 LINE L1 -661 6389 5360 1 952 189 74 0 0 chr9 48104686 48104713 -75971459 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1 952 376 239 68 0 chr9 48104883 48104971 -75971201 - B3A SINE B2 -104 94 1 1 952 1146 304 71 35 chr9 48104992 48105583 -75970589 - Lx8 LINE L1 -4 7469 6858 1 952 2327 259 44 12 chr9 48105580 48106166 -75970006 + Lx7 LINE L1 6811 7415 -281 1 952 239 113 19 0 chr9 48106166 48106219 -75969953 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 952 369 0 0 0 chr9 48106398 48106439 -75969733 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 952 425 227 72 72 chr9 48106502 48106654 -75969518 - L1MA10 LINE L1 -8 6326 6175 1 952 252 312 31 15 chr9 48106661 48106791 -75969381 - L1MC5 LINE L1 -519 7442 7311 1 952 605 333 48 61 chr9 48107221 48107617 -75968555 - MLT1A1 LTR MaLR -17 391 1 1 952 470 183 19 0 chr9 48108134 48108238 -75967934 + GA-rich Low_complexity Low_complexity 1 106 0 1 952 737 184 16 0 chr9 48108442 48108567 -75967605 + RMER20A LTR ERVK 1 127 -389 1 952 862 176 368 21 chr9 48108558 48108748 -75967424 + RMER20A LTR ERVK 261 516 0 1 952 301 287 128 0 chr9 48109251 48109345 -75966827 + B4A SINE B4 165 270 -22 1 952 603 71 0 0 chr9 48109345 48109430 -75966742 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 952 289 231 83 46 chr9 48109769 48109878 -75966294 + L1M4b LINE L1 2266 2378 -4956 1 952 652 210 87 88 chr9 48109868 48110144 -75966028 - L1_Mur3 LINE L1 -1333 4544 4273 1 952 1875 158 73 20 chr9 48110462 48110817 -75965355 - ORR1D1 LTR MaLR 0 374 1 1 952 1226 48 0 0 chr9 48111254 48111400 -75964772 + B1_Mm SINE Alu 1 146 -1 1 952 2931 61 32 25 chr9 48111585 48111991 -75964181 - RLTR9E LTR ERVK 0 409 1 2 952 461 86 0 67 chr9 48111991 48112066 -75964106 - ETnERV2-int LTR ERVK 0 7406 7337 2 952 271 115 296 37 chr9 48112107 48112188 -75963984 - RLTR6-int LTR ERV1 -64 7714 7613 2 952 4111 143 45 20 chr9 48112174 48112879 -75963293 - MMVL30-int LTR ERV1 -93 3605 2883 2 952 803 286 4 4 chr9 48112959 48113201 -75962971 - RLTR6-int LTR ERV1 -3204 4574 4333 2 952 615 259 142 24 chr9 48113204 48113568 -75962604 - RLTR6-int LTR ERV1 -1467 2231 2134 2 952 4828 166 42 10 chr9 48113577 48114440 -75961732 - Lx5 LINE L1 -303 6747 5858 2 952 462 289 7 15 chr9 48114946 48115083 -75961089 + MTEa LTR MaLR 243 378 -1 2 952 231 146 0 0 chr9 48115880 48115935 -75960237 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 2 952 243 189 0 0 chr9 48116033 48116086 -75960086 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 952 378 0 0 0 chr9 48116781 48116823 -75959349 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 952 1520 52 21 0 chr9 48117252 48117443 -75958729 + B2_Mm2 SINE B2 1 195 0 2 952 656 340 139 19 chr9 48117464 48118052 -75958120 + Charlie25 DNA MER1_type 739 1397 -1127 2 952 738 244 129 2 chr9 48118230 48118517 -75957655 - L1MB2 LINE L1 -18 6171 5846 2 952 2328 78 119 11 chr9 48119634 48119986 -75956186 - RLTR10 LTR ERVK 0 390 1 2 952 1229 262 49 22 chr9 48120260 48120630 -75955542 - L1MB2 LINE L1 -484 5687 5308 2 952 5382 71 14 16 chr9 48120739 48121469 -75954703 + L1_Mus3 LINE L1 5896 6623 -15 2 952 449 311 44 40 chr9 48121842 48122070 -75954102 + Lx9 LINE L1 7059 7287 -357 2 952 921 301 158 26 chr9 48122124 48122936 -75953236 - L1MB2 LINE L1 -1869 4271 3353 2 952 25 51 0 0 chr9 48122936 48122975 -75953197 + AT_rich Low_complexity Low_complexity 1 39 0 2 952 900 197 46 10 chr9 48122975 48123010 -75953162 - B3 SINE B2 0 216 183 2 952 519 69 0 0 chr9 48123010 48123082 -75953090 + (TATG)n Simple_repeat Simple_repeat 3 74 0 2 952 900 197 46 10 chr9 48123082 48123241 -75952931 - B3 SINE B2 -34 182 16 2 952 286 192 63 13 chr9 48123248 48123327 -75952845 - L1MB2 LINE L1 -2782 3358 3276 2 952 1067 59 5 28 chr9 48123333 48123544 -75952628 + (TTC)n Simple_repeat Simple_repeat 1 205 0 2 952 762 148 17 17 chr9 48123547 48123726 -75952446 + CT-rich Low_complexity Low_complexity 1 179 0 2 952 1297 50 0 22 chr9 48123726 48123910 -75952262 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 952 411 310 83 24 chr9 48124139 48124344 -75951828 - L1MB2 LINE L1 -3135 3005 2789 2 952 374 317 87 10 chr9 48124363 48124570 -75951602 + Charlie25 DNA MER1_type 1649 1871 -653 2 952 1227 41 0 0 chr9 48124588 48124734 -75951438 - B1_Mm SINE Alu 0 147 2 2 952 252 77 0 0 chr9 48124784 48124823 -75951349 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 2 952 718 264 35 5 chr9 48124824 48125022 -75951150 - ID_B1 SINE B4 -15 209 6 2 952 391 300 37 30 chr9 48125537 48125671 -75950501 + B4 SINE B4 1 135 -157 2 952 426 53 0 0 chr9 48125766 48125823 -75950349 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 952 477 0 0 0 chr9 48125854 48125907 -75950265 + (GGGGA)n Simple_repeat Simple_repeat 1 53 0 2 952 403 258 10 40 chr9 48125928 48126029 -75950143 + B3A SINE B2 84 181 -17 2 952 580 220 53 53 chr9 48126619 48126806 -75949366 + B3 SINE B2 29 215 -1 2 952 978 335 29 7 chr9 48126911 48127362 -75948810 + L1MB3 LINE L1 5716 6176 -7 2 952 990 193 81 0 chr9 48128257 48128454 -75947718 + B3 SINE B2 2 214 -2 2 952 507 33 0 0 chr9 48128489 48128550 -75947622 + (TTA)n Simple_repeat Simple_repeat 1 61 0 2 952 25 0 0 0 chr9 48128968 48128993 -75947179 + AT_rich Low_complexity Low_complexity 1 25 0 2 952 912 261 12 4 chr9 48129480 48129722 -75946450 + MTD LTR MaLR 18 261 -158 2 952 488 168 73 11 chr9 48129793 48129919 -75946253 + MTD LTR MaLR 272 403 -16 2 952 576 301 49 0 chr9 48130778 48130941 -75945231 + B3 SINE B2 17 187 -29 2 952 25 31 0 0 chr9 48130941 48130973 -75945199 + AT_rich Low_complexity Low_complexity 1 32 0 2 952 213 94 0 0 chr9 48131276 48131308 -75944864 + (TTG)n Simple_repeat Simple_repeat 1 32 0 2 952 795 222 70 0 chr9 48132802 48132840 -75943332 - B3A SINE B2 0 198 158 2 952 450 0 0 0 chr9 48132840 48132890 -75943282 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 952 795 222 70 0 chr9 48132890 48133036 -75943136 - B3A SINE B2 -41 157 2 2 952 239 209 0 0 chr9 48135662 48135705 -75940467 + CT-rich Low_complexity Low_complexity 1 43 0 2 952 809 204 0 0 chr9 48135705 48135847 -75940325 - B1_Mur3 SINE Alu -7 142 1 2 952 524 154 254 8 chr9 48135882 48136000 -75940172 + B1_Mus1 SINE Alu 2 148 0 2 952 291 85 0 0 chr9 48136004 48136051 -75940121 + (A)n Simple_repeat Simple_repeat 1 47 0 2 952 1654 285 141 4 chr9 48136417 48137313 -75938859 - L1M3 LINE L1 -862 5429 4406 2 952 591 248 64 19 chr9 48137761 48137917 -75938255 - RSINE1 SINE B4 0 165 3 2 952 1122 254 23 69 chr9 48138671 48138976 -75937196 - B4A SINE B4 0 292 2 2 952 225 379 11 0 chr9 48140189 48140284 -75935888 + C-rich Low_complexity Low_complexity 1 96 0 2 952 192 125 0 0 chr9 48140359 48140391 -75935781 + (CTCTG)n Simple_repeat Simple_repeat 4 35 0 2 952 192 40 0 0 chr9 48141429 48141454 -75934718 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 2 952 768 125 0 0 chr9 48141673 48141801 -75934371 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 2 952 611 64 36 0 chr9 48142017 48142127 -75934045 + (GA)n Simple_repeat Simple_repeat 1 114 0 2 952 357 93 26 26 chr9 48143304 48143381 -75932791 + (TTTTG)n Simple_repeat Simple_repeat 3 79 0 2 952 261 0 0 0 chr9 48143428 48143457 -75932715 + (T)n Simple_repeat Simple_repeat 1 29 0 2 952 1182 61 0 0 chr9 48143457 48143605 -75932567 - B1_Mus1 SINE Alu 0 148 1 2 952 267 179 0 0 chr9 48144591 48144658 -75931514 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 952 649 243 71 128 chr9 48144701 48144998 -75931174 - B4 SINE B4 -12 280 1 2 952 1428 191 145 156 chr9 48145180 48145660 -75930512 + MT2A LTR ERVL 1 483 -50 2 952 1017 86 32 0 chr9 48145660 48145940 -75930232 + (TAGA)n Simple_repeat Simple_repeat 1 289 0 2 952 1428 191 145 156 chr9 48145940 48145996 -75930176 + MT2A LTR ERVL 484 533 0 2 952 352 306 26 26 chr9 48146075 48146189 -75929983 - B1F1 SINE Alu -30 119 6 2 952 549 72 0 0 chr9 48146802 48146885 -75929287 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 952 231 36 0 0 chr9 48147747 48147775 -75928397 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 952 245 29 29 0 chr9 48148322 48148356 -75927816 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 952 208 301 0 31 chr9 48149531 48149627 -75926545 + (TA)n Simple_repeat Simple_repeat 1 93 0 2 952 236 243 131 50 chr9 48150025 48150185 -75925987 - L1MA9 LINE L1 0 6312 6140 2 952 363 301 60 30 chr9 48150344 48150512 -75925660 - L1M3 LINE L1 -440 5749 5577 2 952 542 282 76 73 chr9 48150614 48150692 -75925480 - L1M3 LINE L1 -2566 3574 3505 2 952 504 0 0 0 chr9 48150692 48150748 -75925424 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2 952 784 217 65 11 chr9 48150755 48150941 -75925231 - B3 SINE B2 -19 197 2 2 952 542 282 76 73 chr9 48150941 48151156 -75925016 - L1M3 LINE L1 -2636 3504 3272 2 952 253 312 26 0 chr9 48151538 48151615 -75924557 - ID4_ SINE ID -4 79 1 2 952 240 227 0 0 chr9 48151659 48151707 -75924465 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 952 423 0 0 0 chr9 48151707 48151754 -75924418 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 952 240 227 0 0 chr9 48151754 48151780 -75924392 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 952 621 244 160 23 chr9 48151787 48152043 -75924129 - B4A SINE B4 0 292 2 2 952 1011 94 0 39 chr9 48152073 48152228 -75923944 + B1_Mur4 SINE Alu 1 149 -1 2 952 195 69 0 0 chr9 48152245 48152274 -75923898 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 2 952 394 319 95 70 chr9 48152479 48152867 -75923305 - MLT1F1 LTR MaLR -68 501 104 2 952 206 268 0 0 chr9 48153260 48153316 -75922856 + L2a LINE L2 3370 3425 -1 2 952 549 0 0 0 chr9 48153979 48154040 -75922132 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 952 488 273 55 61 chr9 48154244 48154408 -75921764 + RSINE1 SINE B4 3 165 0 2 952 975 221 53 14 chr9 48155172 48155379 -75920793 - B3 SINE B2 0 216 2 2 952 251 179 0 0 chr9 48155390 48155429 -75920743 + polypyrimidine Low_complexity Low_complexity 70 108 0 2 952 1146 61 0 33 chr9 48155429 48155581 -75920591 - B1_Mus1 SINE Alu -1 147 1 2 952 669 192 8 0 chr9 48155809 48155934 -75920238 - RSINE1 SINE B4 -29 136 11 2 952 575 246 60 0 chr9 48155944 48156078 -75920094 - ID_B1 SINE B4 -1 223 82 2 952 21 0 0 0 chr9 48156126 48156147 -75920025 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 251 279 131 61 chr9 48156414 48156643 -75919529 - L1ME1 LINE L1 0 6179 5935 2 952 261 0 0 0 chr9 48156940 48156969 -75919203 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 952 316 294 28 0 chr9 48157006 48157115 -75919057 - PB1D9 SINE Alu -2 118 7 2 952 782 244 67 5 chr9 48157646 48157856 -75918316 - ID_B1 SINE B4 -1 223 1 2 952 865 317 62 12 chr9 48157856 48158277 -75917895 - L1MD LINE L1 -980 5166 4725 2 952 280 398 127 8 chr9 48158365 48158601 -75917571 + MER70B LTR ERVL 92 355 -223 2 952 520 318 66 57 chr9 48158663 48159116 -75917056 - L1M5 LINE L1 -1427 4719 4258 2 952 281 26 26 0 chr9 48159116 48159154 -75917018 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 952 520 332 72 53 chr9 48159154 48159352 -75916820 - L1M5 LINE L1 -1887 4259 4047 2 952 914 263 113 10 chr9 48159570 48159870 -75916302 - MTEb LTR MaLR -6 373 43 2 952 253 197 14 14 chr9 48161222 48161294 -75914878 + C-rich Low_complexity Low_complexity 4 75 0 2 952 273 263 53 111 chr9 48161294 48161465 -75914707 + RMER10A LTR ERVL 257 417 -25 2 952 26 30 0 0 chr9 48161719 48161752 -75914420 + AT_rich Low_complexity Low_complexity 1 33 0 2 952 2851 257 138 51 chr9 48162590 48163662 -75912510 - Lx6 LINE L1 -3 7457 6054 2 952 3157 165 8 7 chr9 48163662 48164348 -75911824 + Lx5 LINE L1 5323 6016 -1034 2 952 789 258 15 10 chr9 48164388 48164588 -75911584 + B3 SINE B2 15 215 -1 2 952 455 290 0 0 chr9 48165075 48165182 -75910990 - PB1D7 SINE Alu -13 107 1 2 952 355 279 119 21 chr9 48165312 48165455 -75910717 + Tigger5 DNA MER2_type 1 157 -2249 2 952 488 294 18 24 chr9 48165492 48165656 -75910516 + RSINE1 SINE B4 3 165 0 3 952 23 54 0 0 chr9 48165659 48165696 -75910476 + AT_rich Low_complexity Low_complexity 1 37 0 3 952 489 254 17 0 chr9 48165700 48165818 -75910354 + B1_Mur4 SINE Alu 31 150 0 3 952 473 286 58 37 chr9 48165838 48166027 -75910145 + B3A SINE B2 1 193 -5 3 952 309 316 8 50 chr9 48166087 48166207 -75909965 + Tigger5 DNA MER2_type 2291 2405 -1 2 952 534 245 94 25 chr9 48166207 48166402 -75909770 - Tigger7 DNA MER2_type -86 2405 2197 3 952 900 218 161 41 chr9 48167232 48167324 -75908848 + ORR1C2 LTR MaLR 1 145 -239 3 952 426 39 0 0 chr9 48167324 48167376 -75908796 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 952 900 186 163 39 chr9 48167376 48167578 -75908594 + ORR1C2 LTR MaLR 146 384 0 3 952 497 232 7 28 chr9 48167676 48167818 -75908354 + B1F SINE Alu 10 148 -1 3 952 328 346 53 16 chr9 48168115 48168303 -75907869 + Lx9 LINE L1 7267 7461 -183 3 952 608 186 0 14 chr9 48168324 48168628 -75907544 + (TG)n Simple_repeat Simple_repeat 1 299 0 3 952 716 177 6 0 chr9 48168651 48168826 -75907346 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 952 982 189 21 0 chr9 48168960 48169151 -75907021 + B3 SINE B2 5 199 -17 3 952 1634 62 14 0 chr9 48169241 48169452 -75906720 + L1Md_F2 LINE L1 6357 6570 -12 3 952 1005 289 83 30 chr9 48169774 48170234 -75905938 + RMER5 LTR ERV1 40 523 -11 3 952 202 95 48 0 chr9 48170916 48170958 -75905214 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 3 952 1158 54 0 20 chr9 48171700 48171836 -75904336 + B1_Mus2 SINE Alu 1 136 -11 3 952 194 0 39 0 chr9 48171836 48171862 -75904310 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 952 1158 54 0 20 chr9 48171862 48171875 -75904297 + B1_Mus2 SINE Alu 137 147 0 3 952 303 336 78 13 chr9 48171883 48172037 -75904135 - MTEa LTR MaLR -14 365 202 3 952 880 50 120 32 chr9 48172099 48172224 -75903948 + B1_Mus1 SINE Alu 1 136 -12 3 952 1102 99 0 12 chr9 48172224 48172397 -75903775 + (GAA)n Simple_repeat Simple_repeat 2 172 0 3 952 324 0 0 0 chr9 48172397 48172432 -75903740 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 3 952 915 98 0 0 chr9 48172432 48172563 -75903609 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 3 952 278 360 7 14 chr9 48172565 48172703 -75903469 - L1MC3 LINE L1 -345 7440 7304 3 952 547 215 77 22 chr9 48172888 48173069 -75903103 + B3A SINE B2 1 191 -7 3 952 1694 156 11 88 chr9 48173584 48173949 -75902223 - Lx7 LINE L1 0 7696 7360 3 952 279 0 0 0 chr9 48174272 48174303 -75901869 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 952 226 247 51 13 chr9 48174944 48175022 -75901150 - L1M5 LINE L1 -3382 2764 2684 3 952 586 271 56 60 chr9 48175095 48175311 -75900861 + B3 SINE B2 2 216 0 3 952 669 63 0 0 chr9 48175628 48175723 -75900449 + (TC)n Simple_repeat Simple_repeat 1 95 0 3 952 225 336 39 0 chr9 48176052 48176156 -75900016 + MER20 DNA MER1_type 95 202 -17 3 952 217 127 0 60 chr9 48176368 48176435 -75899737 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 3 952 291 28 0 0 chr9 48176440 48176476 -75899696 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 952 351 0 0 0 chr9 48176476 48176514 -75899658 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 952 491 141 12 0 chr9 48176620 48176705 -75899467 + B1_Mus2 SINE Alu 54 139 -8 3 952 1152 35 0 0 chr9 48176709 48176850 -75899322 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 3 952 2839 49 67 5 chr9 48176987 48177359 -75898813 - L1Md_F2 LINE L1 -12 6570 6176 3 952 2080 100 13 0 chr9 48177506 48177817 -75898355 + ORR1A2 LTR MaLR 5 319 -8 3 952 546 308 41 33 chr9 48177962 48178207 -75897965 - B4A SINE B4 -44 248 2 3 952 229 320 38 28 chr9 48178252 48178358 -75897814 - ORR1E LTR MaLR -245 114 8 3 952 578 275 95 46 chr9 48178359 48178664 -75897508 - L1MD3 LINE L1 -29 7966 7647 3 952 505 239 62 0 chr9 48178665 48178795 -75897377 + RSINE1 SINE B4 4 141 -24 3 952 363 280 139 52 chr9 48178867 48179191 -75896981 - L1MD3 LINE L1 -333 7549 7198 3 952 562 313 18 0 chr9 48179245 48179411 -75896761 - B3A SINE B2 -16 182 14 3 952 1278 51 11 11 chr9 48179689 48179869 -75896303 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 952 276 30 0 0 chr9 48179869 48179902 -75896270 + (TCCC)n Simple_repeat Simple_repeat 1 33 0 3 952 1117 89 0 22 chr9 48179904 48180134 -75896038 + (TTTC)n Simple_repeat Simple_repeat 1 225 0 3 952 512 303 108 30 chr9 48180137 48180474 -75895698 - L1MD3 LINE L1 -1020 6862 6505 3 952 3159 60 5 0 chr9 48180696 48181093 -75895079 + L1Md_F2 LINE L1 6183 6581 -1 3 952 231 225 0 81 chr9 48181110 48181171 -75895001 + A-rich Low_complexity Low_complexity 1 55 0 3 952 488 126 9 19 chr9 48181171 48181276 -75894896 + Lx6 LINE L1 7357 7460 0 3 952 231 225 0 81 chr9 48181276 48181301 -75894871 + A-rich Low_complexity Low_complexity 56 80 0 3 952 738 210 254 40 chr9 48181351 48181654 -75894518 + ORR1D2 LTR MaLR 2 369 -1 3 952 624 111 0 0 chr9 48181878 48181977 -75894195 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 3 952 610 133 63 0 chr9 48181989 48182132 -75894040 - RMER17B LTR ERVK -495 463 312 3 952 911 255 39 0 chr9 48182144 48182348 -75893824 - B3 SINE B2 -4 212 1 3 952 248 287 27 47 chr9 48182857 48183007 -75893165 + GA-rich Low_complexity Low_complexity 3 149 0 3 952 9124 78 59 3 chr9 48184661 48186679 -75889493 - L1_Mus1 LINE L1 0 6567 4427 3 952 17961 21 0 0 chr9 48186683 48189411 -75886761 - L1Md_T LINE L1 0 6582 3855 3 952 1827 70 316 27 chr9 48189411 48189746 -75886426 - L1_Mus1 LINE L1 -1441 4442 4030 3 952 300 296 148 0 chr9 48189947 48190082 -75886090 - HAL1-3A_ME LINE L1 -420 2438 2284 3 952 547 248 19 57 chr9 48190194 48190352 -75885820 - RSINE1 SINE B4 0 165 14 3 952 279 358 8 8 chr9 48190559 48190680 -75885492 - L1MCc LINE L1 -5169 1254 1134 3 952 277 186 17 0 chr9 48190838 48190897 -75885275 - RLTR18B LTR ERVK -340 172 113 3 952 680 277 80 77 chr9 48191277 48191665 -75884507 + MTD LTR MaLR 18 406 -13 3 952 268 239 0 53 chr9 48192792 48192867 -75883305 - MTEb LTR MaLR -3 376 306 3 952 8356 81 3 3 chr9 48192868 48194514 -75881658 - L1_Mus3 LINE L1 -6 6632 4987 3 952 6803 104 8 10 chr9 48194514 48195506 -75880666 + L1_Mus3 LINE L1 3989 4978 -905 3 952 1043 22 7 7 chr9 48196175 48196313 -75879859 - B1_Mm SINE Alu 0 147 10 3 952 236 176 0 19 chr9 48196569 48196621 -75879551 - RLTR33 LTR ERVK 0 678 628 3 952 24 0 0 0 chr9 48196927 48196951 -75879221 + AT_rich Low_complexity Low_complexity 1 24 0 3 952 1116 89 0 0 chr9 48198629 48198809 -75877363 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 952 1101 91 0 0 chr9 48198831 48199113 -75877059 + (TG)n Simple_repeat Simple_repeat 1 282 0 3 952 2702 134 29 7 chr9 48199881 48200293 -75875879 - MTC LTR MaLR 0 421 1 3 952 445 264 90 51 chr9 48200368 48200524 -75875648 - B3A SINE B2 -36 162 1 3 952 1272 47 112 6 chr9 48201685 48201855 -75874317 - B2_Mm2 SINE B2 -5 190 3 3 952 501 17 0 0 chr9 48201937 48201995 -75874177 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 952 596 227 93 60 chr9 48202868 48203051 -75873121 + ID_B1 SINE B4 29 217 -7 3 952 241 182 55 0 chr9 48203002 48203057 -75873115 + PB1D10 SINE Alu 59 116 -1 3 952 1818 198 20 42 chr9 48203550 48204022 -75872150 - RLTR31_Mm LTR ERVK -99 454 1 3 952 925 226 21 47 chr9 48204061 48204340 -75871832 - RMER3D-int LTR ERVK -22 2820 2549 3 952 402 39 0 0 chr9 48206025 48206077 -75870095 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 952 972 267 46 23 chr9 48207488 48207879 -75868293 - L1M2 LINE L1 -2385 3758 3359 3 952 32 114 0 0 chr9 48207945 48208103 -75868069 + AT_rich Low_complexity Low_complexity 1 158 0 3 952 712 111 158 8 chr9 48208120 48208247 -75867925 - B1_Mus2 SINE Alu -1 146 1 3 952 492 263 0 0 chr9 48208297 48208396 -75867776 - RSINE1 SINE B4 -22 143 45 3 952 754 229 62 43 chr9 48208435 48208537 -75867635 + B3 SINE B2 3 117 -99 3 952 4431 139 24 16 chr9 48208537 48209287 -75866885 + RMER6A LTR ERVK 1 756 0 3 952 754 229 62 43 chr9 48209287 48209394 -75866778 + B3 SINE B2 118 216 0 3 952 274 285 160 8 chr9 48209564 48209695 -75866477 + MIR3 SINE MIR 7 157 -51 3 952 660 208 57 94 chr9 48210308 48210467 -75865705 + B3A SINE B2 2 154 -41 3 952 267 231 102 0 chr9 48210490 48210598 -75865574 + Lx8 LINE L1 7355 7473 0 3 952 890 322 29 0 chr9 48210746 48211019 -75865153 + RMER15-int LTR ERVL 4384 4664 -335 3 952 3511 25 2 2 chr9 48211170 48211566 -75864606 + MTA_Mm LTR MaLR 1 396 0 3 952 268 246 96 29 chr9 48212181 48212346 -75863826 + RMER16 LTR ERVK 214 352 -181 3 952 503 254 52 92 chr9 48212366 48212617 -75863555 + RMER16 LTR ERVK 288 528 -5 3 952 5504 196 142 39 chr9 48212695 48214031 -75862141 - Lx9 LINE L1 -1 7643 6170 3 952 216 0 0 0 chr9 48214476 48214500 -75861672 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 952 512 222 12 23 chr9 48215134 48215305 -75860867 + CT-rich Low_complexity Low_complexity 6 174 0 3 952 362 242 0 114 chr9 48215802 48215951 -75860221 + RMER15 LTR ERVL 290 421 -154 3 952 6062 26 0 0 chr9 48216798 48217492 -75858680 + L1Md_T LINE L1 4346 5039 -844 3 952 8585 26 0 0 chr9 48217492 48218464 -75857708 + L1Md_T LINE L1 5600 6571 -11 3 952 204 40 0 0 chr9 48218765 48218790 -75857382 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 952 228 205 83 12 chr9 48219116 48219200 -75856972 + Lx8 LINE L1 7382 7471 -2 3 952 285 98 0 0 chr9 48219210 48219251 -75856921 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 952 612 73 0 0 chr9 48219251 48219332 -75856840 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 952 601 235 183 6 chr9 48219336 48219516 -75856656 + B3 SINE B2 2 213 -3 3 952 359 311 95 49 chr9 48219889 48220193 -75855979 + L1MEg LINE L1 1440 1757 -4327 3 952 670 234 32 19 chr9 48220212 48220346 -75855826 + RSINE1 SINE B4 3 141 -24 3 952 393 39 0 0 chr9 48220346 48220397 -75855775 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 952 670 234 32 19 chr9 48220397 48220419 -75855753 + RSINE1 SINE B4 142 161 -4 3 952 563 202 18 27 chr9 48220533 48220645 -75855527 + B1_Mur1 SINE Alu 21 131 -18 4 952 277 156 60 45 chr9 48220651 48220718 -75855454 + B1_Mur1 SINE Alu 82 149 0 4 952 574 206 194 32 chr9 48220720 48220906 -75855266 + B3 SINE B2 1 216 0 4 952 1566 163 102 3 chr9 48221618 48221951 -75854221 - RLTR14 LTR ERV1 -16 366 1 4 952 415 196 17 43 chr9 48221951 48222034 -75854138 - ORR1A2 LTR MaLR -247 80 1 4 952 3358 136 173 29 chr9 48222034 48222734 -75853438 - RLTR14-int LTR ERV1 -269 5048 4248 4 952 294 136 0 0 chr9 48222741 48222785 -75853387 - RLTR14 LTR ERV1 -338 44 1 4 952 837 245 0 53 chr9 48222882 48223110 -75853062 + B3 SINE B2 1 216 0 4 952 332 311 47 0 chr9 48223187 48223335 -75852837 + Charlie4a DNA MER1_type 292 446 -62 4 952 294 51 0 0 chr9 48223339 48223388 -75852784 + L1_Mus2 LINE L1 6523 6566 0 4 952 375 154 0 0 chr9 48223397 48223462 -75852710 + A-rich Low_complexity Low_complexity 5 69 0 4 952 207 0 0 0 chr9 48225728 48225751 -75850421 + (T)n Simple_repeat Simple_repeat 1 23 0 4 952 1196 54 0 7 chr9 48225753 48225902 -75850270 - B1_Mus1 SINE Alu 0 148 1 4 952 182 324 70 35 chr9 48227174 48227289 -75848883 + L2 LINE L2 1907 2025 -1394 4 952 275 216 0 0 chr9 48227511 48227562 -75848610 + PB1D10 SINE Alu 24 74 -43 4 952 285 308 5 15 chr9 48229460 48229576 -75846596 + CT-rich Low_complexity Low_complexity 1 114 0 4 952 186 245 41 0 chr9 48229599 48229648 -75846524 - L2c LINE L2 0 3387 3337 4 952 518 15 30 0 chr9 48229678 48229744 -75846428 + (TCTCCC)n Simple_repeat Simple_repeat 3 70 0 4 952 692 181 0 7 chr9 48230021 48230318 -75845854 + (CA)n Simple_repeat Simple_repeat 1 294 0 4 952 3701 124 22 26 chr9 48231104 48231681 -75844491 - Lx4A LINE L1 -3 7055 6481 4 952 431 206 0 11 chr9 48232034 48232127 -75844045 - B1_Mur4 SINE Alu -47 103 12 4 952 300 27 0 0 chr9 48233014 48233051 -75843121 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 4 952 1507 58 16 10 chr9 48233126 48233319 -75842853 - B2_Mm2 SINE B2 0 195 2 4 14 630 333 82 13 chr9 48234346 48234650 -75841522 - MER2 DNA MER2_type -14 331 7 4 953 704 247 19 7 chr9 48234656 48234811 -75841361 + RSINE1 SINE B4 2 158 -7 4 953 358 350 82 27 chr9 48235027 48235247 -75840925 + MLT1J LTR MaLR 143 374 -138 4 953 6834 142 91 17 chr9 48236121 48237326 -75838846 - Lx5 LINE L1 -1 7049 5757 4 953 4338 114 5 0 chr9 48237330 48237953 -75838219 - Lx5 LINE L1 -247 5630 5005 4 953 549 0 0 0 chr9 48237963 48238024 -75838148 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 4 953 289 146 0 35 chr9 48238042 48238099 -75838073 - B2_Mm2 SINE B2 -94 101 47 4 953 997 119 30 0 chr9 48238165 48238333 -75837839 - B2_Mm1t SINE B2 -14 179 7 4 953 3331 100 12 15 chr9 48238341 48238820 -75837352 - Lx5 LINE L1 -858 5019 4542 4 953 491 219 114 0 chr9 48238821 48238944 -75837228 + B1_Mus2 SINE Alu 11 147 0 4 953 216 86 0 0 chr9 48240152 48240187 -75835985 + (T)n Simple_repeat Simple_repeat 1 35 0 4 953 1268 20 0 0 chr9 48240187 48240334 -75835838 - B1_Mus2 SINE Alu 0 147 1 4 953 467 333 104 0 chr9 48240375 48240558 -75835614 + ID_B1 SINE B4 2 203 -21 4 953 428 347 35 35 chr9 48240856 48241081 -75835091 - Cheshire DNA MER1_type -2132 288 64 4 953 446 0 19 0 chr9 48241081 48241135 -75835037 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 4 953 428 347 35 35 chr9 48241135 48241196 -75834976 - Cheshire DNA MER1_type -2357 63 2 4 953 468 0 0 0 chr9 48241579 48241631 -75834541 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 953 10771 173 53 10 chr9 48241782 48243552 -75832620 - L1_Mur3 LINE L1 -547 5333 3481 4 953 855 29 0 0 chr9 48243552 48243654 -75832518 + (GTTTG)n Simple_repeat Simple_repeat 2 103 0 4 953 10771 173 53 10 chr9 48243654 48244127 -75832045 - L1_Mur3 LINE L1 -2400 3480 2994 4 953 13175 61 2 1 chr9 48244119 48245800 -75830372 - L1_Mm LINE L1 -1204 4679 2996 4 953 314 196 0 0 chr9 48245798 48245854 -75830318 - L1_Mur1 LINE L1 -3080 2806 2751 4 953 341 74 74 0 chr9 48245866 48245920 -75830252 + B1_Mus2 SINE Alu 73 130 -17 4 953 770 292 116 47 chr9 48245965 48246194 -75829978 + L1MC4a LINE L1 5414 5673 -2209 4 953 315 0 0 0 chr9 48246194 48246229 -75829943 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 953 770 292 116 47 chr9 48246229 48246448 -75829724 + L1MC4a LINE L1 5674 5893 -1989 4 953 320 235 217 8 chr9 48246683 48246803 -75829369 + RSINE1 SINE B4 2 146 -19 4 953 23 33 0 0 chr9 48246825 48246855 -75829317 + AT_rich Low_complexity Low_complexity 1 30 0 4 953 1464 78 11 0 chr9 48246863 48247054 -75829118 + B2_Mm2 SINE B2 2 194 -1 4 953 220 194 44 15 chr9 48247054 48247113 -75829059 + GA-rich Low_complexity Low_complexity 13 74 0 4 953 1284 89 0 0 chr9 48247114 48247294 -75828878 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 953 291 51 0 0 chr9 48247671 48247710 -75828462 - tRNA-Arg-AGA tRNA tRNA -37 39 1 4 953 818 189 0 0 chr9 48248013 48248156 -75828016 + B3A SINE B2 1 143 -55 4 953 342 0 0 0 chr9 48248185 48248223 -75827949 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 953 744 128 0 0 chr9 48248309 48248434 -75827738 + B1_Mus2 SINE Alu 23 147 0 4 953 803 72 0 0 chr9 48248467 48248578 -75827594 + B1_Mm SINE Alu 1 111 -36 4 953 739 114 28 17 chr9 48248824 48249002 -75827170 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 953 428 87 43 0 chr9 48249018 48249110 -75827062 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 953 439 214 0 0 chr9 48249113 48249197 -75826975 - Lx9 LINE L1 -171 7473 7390 4 953 533 288 65 10 chr9 48249511 48249763 -75826409 + L1M3 LINE L1 2572 2846 -3294 4 953 571 53 0 0 chr9 48249784 48249859 -75826313 - B2_Mm1a SINE B2 -28 165 91 4 953 468 106 0 0 chr9 48249901 48249986 -75826186 + (CTTG)n Simple_repeat Simple_repeat 1 85 0 4 953 1264 81 6 6 chr9 48249997 48250170 -75826002 - B2_Mm1a SINE B2 -19 174 2 4 953 413 302 40 40 chr9 48250294 48250418 -75825754 - RSINE1 SINE B4 -19 146 23 4 953 731 11 11 0 chr9 48250457 48250545 -75825627 + (GA)n Simple_repeat Simple_repeat 1 89 0 4 953 267 308 88 22 chr9 48250558 48250694 -75825478 - RSINE1 SINE B4 -17 148 4 4 953 183 100 0 0 chr9 48251598 48251628 -75824544 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 953 566 219 116 7 chr9 48251634 48251772 -75824400 - RSINE1 SINE B4 -10 155 3 4 953 616 259 95 0 chr9 48251904 48252051 -75824121 + B3A SINE B2 1 161 -37 4 953 387 0 0 0 chr9 48252059 48252102 -75824070 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 953 265 289 140 32 chr9 48252486 48252579 -75823593 + RSINE1 SINE B4 3 105 -60 4 953 239 216 0 43 chr9 48253092 48253184 -75822988 + (TTGG)n Simple_repeat Simple_repeat 4 91 0 4 953 479 254 71 0 chr9 48253679 48253805 -75822367 - RSINE1 SINE B4 -28 137 3 4 953 265 340 106 12 chr9 48253835 48253996 -75822176 - LTR84b LTR ERVL -38 723 548 4 953 439 332 36 15 chr9 48254196 48254392 -75821780 - B4A SINE B4 -28 264 65 4 953 517 335 12 0 chr9 48255029 48255196 -75820976 + ID_B1 SINE B4 2 170 -54 4 953 256 340 9 0 chr9 48255116 48255222 -75820950 + PB1D10 SINE Alu 10 116 -1 4 953 874 216 94 105 chr9 48255364 48255827 -75820345 - MT2B LTR ERVL 0 601 3 4 953 249 174 0 42 chr9 48256257 48256305 -75819867 - ID SINE ID -167 57 12 4 953 341 321 65 40 chr9 48256314 48256561 -75819611 + L2 LINE L2 2164 2416 -1003 4 953 198 0 0 0 chr9 48256640 48256662 -75819510 + (TTG)n Simple_repeat Simple_repeat 3 24 0 4 953 286 246 27 107 chr9 48256679 48256829 -75819343 + RLTR15 LTR ERVK 1 138 -221 4 953 599 229 62 58 chr9 48256815 48257089 -75819083 + RLTR15 LTR ERVK 72 346 -13 4 953 1144 89 0 0 chr9 48257176 48257322 -75818850 - B1_Mus1 SINE Alu -1 147 2 4 953 244 375 62 6 chr9 48257588 48257765 -75818407 + MLT1A LTR MaLR 124 310 -64 4 953 765 229 27 16 chr9 48257770 48257956 -75818216 + B3 SINE B2 29 216 0 4 953 345 181 11 88 chr9 48259675 48259766 -75816406 + B1F1 SINE Alu 1 84 -65 4 953 578 286 58 0 chr9 48259855 48260026 -75816146 + B3A SINE B2 1 181 -17 4 953 278 284 171 12 chr9 48260595 48260759 -75815413 + MLT2D LTR ERVL 2 191 -223 4 953 212 221 12 30 chr9 48260877 48260911 -75815261 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 4 953 351 44 0 0 chr9 48260911 48260956 -75815216 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 953 212 221 12 30 chr9 48260956 48261089 -75815083 + (TCTG)n Simple_repeat Simple_repeat 3 132 0 4 953 426 20 0 0 chr9 48261102 48261153 -75815019 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 953 346 304 52 56 chr9 48261578 48261791 -75814381 + L1M5 LINE L1 5442 5653 -526 4 953 1155 68 0 7 chr9 48262012 48262149 -75814023 + B1_Mus1 SINE Alu 2 138 -10 4 953 249 0 73 0 chr9 48262149 48262190 -75813982 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 953 330 130 0 0 chr9 48262257 48262311 -75813861 + L1M5 LINE L1 5769 5822 -342 4 953 852 205 13 6 chr9 48263686 48263843 -75812329 + RSINE1 SINE B4 3 160 -5 4 953 26 0 0 0 chr9 48263856 48263882 -75812290 + AT_rich Low_complexity Low_complexity 1 26 0 4 953 504 288 47 32 chr9 48263885 48264075 -75812097 - MER20 DNA MER1_type -4 215 23 4 953 21 0 0 0 chr9 48264700 48264721 -75811451 + AT_rich Low_complexity Low_complexity 1 21 0 4 953 1188 68 0 0 chr9 48264861 48265022 -75811150 + B2_Mm2 SINE B2 1 161 -34 4 953 207 0 0 0 chr9 48265022 48265045 -75811127 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 4 953 420 224 174 11 chr9 48265141 48265325 -75810847 + B3 SINE B2 3 216 0 4 953 291 114 0 0 chr9 48265334 48265378 -75810794 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 953 1128 116 0 0 chr9 48265380 48265552 -75810620 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 4 953 289 247 21 31 chr9 48265830 48265926 -75810246 + B3A SINE B2 1 95 -103 5 953 385 227 47 16 chr9 48266838 48266955 -75809217 - B4A SINE B4 -135 157 36 5 953 662 194 45 0 chr9 48266996 48267130 -75809042 + B1_Mur1 SINE Alu 1 140 -9 5 953 767 238 18 18 chr9 48267127 48267298 -75808874 + B3A SINE B2 28 198 0 5 953 852 228 9 38 chr9 48267322 48267532 -75808640 + B3 SINE B2 1 204 -12 5 953 23 0 0 0 chr9 48267534 48267557 -75808615 + AT_rich Low_complexity Low_complexity 1 23 0 5 953 663 216 156 22 chr9 48267641 48267821 -75808351 + B3 SINE B2 3 206 -10 5 953 192 77 0 0 chr9 48268067 48268093 -75808079 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 5 953 662 272 122 0 chr9 48268284 48268530 -75807642 + B4A SINE B4 2 277 -15 5 953 525 32 0 0 chr9 48268547 48268610 -75807562 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 953 1162 81 0 0 chr9 48269198 48269346 -75806826 + B1_Mus1 SINE Alu 1 148 0 5 953 242 160 0 20 chr9 48269347 48269398 -75806774 + GA-rich Low_complexity Low_complexity 2 51 0 5 953 31 0 0 0 chr9 48269398 48269429 -75806743 + AT_rich Low_complexity Low_complexity 1 31 0 5 953 391 301 53 131 chr9 48270217 48270318 -75805854 + Lx8 LINE L1 7113 7205 -268 5 953 1649 32 0 0 chr9 48270318 48270505 -75805667 + B2_Mm1t SINE B2 2 188 -5 5 953 391 301 53 131 chr9 48270505 48270777 -75805395 + Lx8 LINE L1 7206 7457 -16 5 953 718 189 15 22 chr9 48270805 48270940 -75805232 + B1_Mur1 SINE Alu 1 134 -15 5 953 255 61 0 0 chr9 48270966 48270999 -75805173 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 953 527 257 70 60 chr9 48271692 48271891 -75804281 + B4A SINE B4 92 292 0 5 953 661 201 34 27 chr9 48273139 48273287 -75802885 + B1_Mur4 SINE Alu 2 150 0 5 953 465 187 7 128 chr9 48273888 48274029 -75802143 + B3A SINE B2 45 168 -30 5 953 1068 148 0 32 chr9 48274036 48274225 -75801947 + URR1A DNA MER1_type 40 222 -4 5 953 432 274 48 24 chr9 48274080 48274248 -75801924 - CYRA11_Mm Unknown Y-chromosome -297 320 149 5 953 1062 89 0 0 chr9 48274319 48274454 -75801718 + B1_Mus2 SINE Alu 3 137 -10 5 953 216 256 130 46 chr9 48274504 48274635 -75801537 + MIRb SINE MIR 103 244 -24 5 953 956 136 6 28 chr9 48274868 48275050 -75801122 - URR1A DNA MER1_type 0 226 49 5 953 628 293 30 0 chr9 48275077 48275244 -75800928 - B3A SINE B2 -26 172 1 5 953 1082 176 29 19 chr9 48275268 48275476 -75800696 - B3 SINE B2 -6 210 1 5 953 2515 72 21 15 chr9 48275694 48276034 -75800138 + ORR1A1 LTR MaLR 1 342 -4 5 953 344 342 91 9 chr9 48277564 48277794 -75798378 - Tigger15a DNA TcMar -363 352 104 5 953 243 0 0 0 chr9 48277832 48277859 -75798313 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 953 592 267 74 107 chr9 48277891 48278037 -75798135 + Lx8 LINE L1 7172 7318 -155 5 953 666 228 22 0 chr9 48278037 48278173 -75797999 + B1_Mur3 SINE Alu 1 139 -10 5 953 592 267 74 107 chr9 48278173 48278336 -75797836 + Lx8 LINE L1 7319 7471 -2 5 953 267 103 0 0 chr9 48278367 48278406 -75797766 + (TATG)n Simple_repeat Simple_repeat 1 39 0 5 953 610 277 54 42 chr9 48278410 48278670 -75797502 - B4 SINE B4 -20 272 10 5 953 919 44 75 68 chr9 48279618 48279764 -75796408 + B1_Mus1 SINE Alu 2 148 0 5 953 281 186 149 11 chr9 48280119 48280206 -75795966 - ID_B1 SINE B4 -125 99 1 5 953 186 346 67 8 chr9 48280281 48280415 -75795757 + L2 LINE L2 2326 2467 -952 5 953 257 136 23 0 chr9 48282093 48282137 -75794035 + L1MC4 LINE L1 7783 7827 -215 5 953 714 196 0 47 chr9 48283354 48283504 -75792668 + B1_Mur1 SINE Alu 6 148 -1 5 953 234 238 14 87 chr9 48283563 48283632 -75792540 - B4 SINE B4 -6 286 223 5 953 21 0 0 0 chr9 48284070 48284091 -75792081 + AT_rich Low_complexity Low_complexity 1 21 0 5 953 646 222 68 58 chr9 48284092 48284283 -75791889 - B3A SINE B2 -4 194 2 5 953 198 0 0 0 chr9 48284302 48284324 -75791848 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 953 333 0 0 0 chr9 48284324 48284360 -75791812 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 953 358 306 32 0 chr9 48284362 48284486 -75791686 - RSINE1 SINE B4 -35 130 3 5 953 429 54 0 0 chr9 48284780 48284836 -75791336 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 953 570 231 0 41 chr9 48284836 48284958 -75791214 - RSINE1 SINE B4 -34 131 15 5 953 688 245 0 7 chr9 48285676 48285824 -75790348 - B1_Mur1 SINE Alu -2 147 1 5 953 348 271 67 8 chr9 48286049 48286168 -75790004 - B3A SINE B2 -72 126 1 5 953 626 206 0 0 chr9 48286168 48286291 -75789881 - B1_Mur2 SINE Alu -25 124 2 5 953 341 264 128 168 chr9 48286614 48286864 -75789308 + MER2 DNA MER2_type 90 329 -16 5 953 206 341 55 61 chr9 48286987 48287168 -75789004 + MIR SINE MIR 41 220 -42 5 953 200 34 0 33 chr9 48287545 48287575 -75788597 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 953 982 25 0 0 chr9 48287575 48287697 -75788475 - B1_Mus1 SINE Alu -9 139 18 5 953 451 239 75 109 chr9 48287697 48287749 -75788423 - B4 SINE B4 -75 217 50 5 953 187 310 17 0 chr9 48288083 48288141 -75788031 + MIR3 SINE MIR 116 174 -34 5 953 186 43 0 0 chr9 48289063 48289086 -75787086 + (T)n Simple_repeat Simple_repeat 1 23 0 5 953 351 229 194 20 chr9 48289931 48290029 -75786143 - PB1D9 SINE Alu -5 115 1 5 953 348 174 0 55 chr9 48290101 48290174 -75785998 + B3A SINE B2 3 71 -127 5 953 222 118 0 0 chr9 48290215 48290249 -75785923 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 953 371 254 47 100 chr9 48290792 48290934 -75785238 - PB1D7 SINE Alu -12 136 1 5 953 21 0 0 0 chr9 48290938 48290959 -75785213 + AT_rich Low_complexity Low_complexity 1 21 0 5 953 1797 60 134 0 chr9 48291549 48291818 -75784354 + ORR1A1 LTR MaLR 1 305 -41 5 953 470 264 27 31 chr9 48291922 48292079 -75784093 - MTE2b LTR MaLR -56 323 147 5 953 282 303 7 29 chr9 48292270 48292406 -75783766 + Charlie21a DNA MER1_type 378 510 -703 5 953 1408 71 16 11 chr9 48292406 48292592 -75783580 + B2_Mm2 SINE B2 2 188 -7 5 953 355 294 20 86 chr9 48293132 48293376 -75782796 - B4A SINE B4 -53 239 12 5 953 444 263 52 8 chr9 48293410 48293544 -75782628 + B1F2 SINE Alu 1 140 -9 5 953 21 0 0 0 chr9 48293874 48293895 -75782277 + AT_rich Low_complexity Low_complexity 1 21 0 5 953 257 267 122 0 chr9 48294189 48294279 -75781893 - L1MA7 LINE L1 -174 6117 6017 5 953 2449 152 7 14 chr9 48294286 48294721 -75781451 + RLTR28 LTR ERVL 1 432 -92 5 953 1478 172 144 9 chr9 48294721 48295061 -75781111 + ORR1B1 LTR MaLR 1 386 -8 5 953 508 161 11 11 chr9 48295066 48295160 -75781012 + RLTR28 LTR ERVL 429 522 -2 5 953 451 198 148 80 chr9 48295172 48295201 -75780971 - B2_Mm2 SINE B2 -7 188 162 5 953 588 65 0 0 chr9 48295201 48295278 -75780894 + (TATG)n Simple_repeat Simple_repeat 1 77 0 5 953 479 198 148 80 chr9 48295278 48295424 -75780748 - B3A SINE B2 -34 161 1 5 953 675 254 174 76 chr9 48295426 48295751 -75780421 + MTE2a LTR MaLR 6 402 -17 5 953 232 311 18 55 chr9 48296009 48296118 -75780054 + LTR33C LTR ERVL 5 109 -520 5 953 885 90 8 0 chr9 48296354 48296487 -75779685 + B1_Mus1 SINE Alu 15 148 0 5 953 360 0 0 0 chr9 48296495 48296535 -75779637 + (A)n Simple_repeat Simple_repeat 1 40 0 5 953 452 250 20 0 chr9 48298559 48298659 -75777513 + B1_Mur2 SINE Alu 42 143 -6 5 953 182 315 21 52 chr9 48299147 48299244 -75776928 - L2a LINE L2 -220 3206 3113 5 953 260 327 77 0 chr9 48300448 48300604 -75775568 + MIR SINE MIR 40 207 -55 5 953 237 159 0 0 chr9 48300645 48300689 -75775483 + T-rich Low_complexity Low_complexity 1 44 0 5 953 1058 57 50 0 chr9 48300689 48300829 -75775343 - B1_Mm SINE Alu 0 147 1 5 953 263 336 59 15 chr9 48301913 48301930 -75774242 + B1F SINE Alu 1 142 -7 5 953 323 308 8 17 chr9 48301930 48302049 -75774123 + ID_B1 SINE B4 100 217 -7 5 953 294 279 103 32 chr9 48302364 48302490 -75773682 + ID_B1 SINE B4 81 215 -9 5 953 296 202 161 35 chr9 48304157 48304244 -75771928 + B1_Mus2 SINE Alu 1 98 -51 5 953 314 286 58 16 chr9 48304350 48304471 -75771701 - ID_B1 SINE B4 -44 180 55 5 953 195 42 0 0 chr9 48304612 48304636 -75771536 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 953 478 212 20 0 chr9 48304671 48304770 -75771402 - PB1D9 SINE Alu -17 103 3 5 953 1470 69 37 0 chr9 48304782 48304970 -75771202 - B2_Mm2 SINE B2 0 195 1 5 953 270 237 92 10 chr9 48306965 48307063 -75769109 + RSINE1 SINE B4 54 159 -6 5 953 411 73 0 0 chr9 48308607 48308662 -75767510 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 953 505 254 47 16 chr9 48308813 48308941 -75767231 - RSINE1 SINE B4 -21 144 13 5 953 2104 205 65 39 chr9 48309884 48309953 -75766219 - Cheshire DNA MER1_type -92 2328 2258 5 953 887 262 20 51 chr9 48309953 48310246 -75765926 + B4A SINE B4 1 284 -8 5 953 2104 205 65 39 chr9 48310246 48310794 -75765378 - Cheshire DNA MER1_type -163 2257 1695 5 953 574 268 12 18 chr9 48310818 48310985 -75765187 - B3 SINE B2 0 216 51 5 953 260 291 59 8 chr9 48312086 48312204 -75763968 + L1ME1 LINE L1 6042 6165 -14 5 953 387 0 0 0 chr9 48313780 48313823 -75762349 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 953 185 0 40 0 chr9 48313976 48314001 -75762171 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 953 1467 229 64 3 chr9 48314019 48314361 -75761811 + ORR1D2 LTR MaLR 1 363 -7 6 953 836 234 24 38 chr9 48314361 48314574 -75761598 - ID_B1 SINE B4 -11 213 4 6 953 1252 35 0 0 chr9 48314702 48314845 -75761327 - B1_Mus1 SINE Alu -4 144 2 6 953 492 18 0 0 chr9 48315053 48315110 -75761062 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 953 270 238 31 16 chr9 48315167 48315231 -75760941 - RSINE1 SINE B4 -73 92 28 6 953 222 158 26 0 chr9 48315570 48315608 -75760564 - B4A SINE B4 -197 95 57 6 953 301 268 61 10 chr9 48316335 48316433 -75759739 + RSINE1 SINE B4 2 104 -61 6 953 1459 242 42 8 chr9 48316568 48316926 -75759246 - ORR1D2 LTR MaLR 0 370 1 6 953 228 327 87 29 chr9 48317043 48317147 -75759025 + PB1 SINE Alu 8 117 0 6 953 2277 166 7 12 chr9 48317617 48318032 -75758140 - MTC LTR MaLR -8 413 1 6 953 616 261 0 0 chr9 48318804 48318938 -75757234 + B3A SINE B2 1 134 -64 6 953 555 66 0 0 chr9 48318950 48319026 -75757146 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 953 770 208 0 32 chr9 48319034 48319188 -75756984 + B1_Mur1 SINE Alu 1 149 0 6 953 41 0 0 0 chr9 48319188 48319229 -75756943 + AT_rich Low_complexity Low_complexity 1 41 0 6 953 192 77 0 0 chr9 48319896 48319922 -75756250 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 6 953 219 139 0 0 chr9 48320199 48320235 -75755937 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 6 953 249 211 0 34 chr9 48320235 48320251 -75755921 + polypyrimidine Low_complexity Low_complexity 43 58 0 6 953 1326 78 0 0 chr9 48320251 48320431 -75755741 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 953 249 211 0 34 chr9 48320431 48320473 -75755699 + polypyrimidine Low_complexity Low_complexity 2 42 0 6 953 204 185 0 0 chr9 48320487 48320541 -75755631 + CT-rich Low_complexity Low_complexity 2 55 0 6 953 684 251 43 16 chr9 48320594 48320780 -75755392 - ID_B1 SINE B4 -30 194 4 6 953 2761 58 0 23 chr9 48320911 48321263 -75754909 - ORR1A1 LTR MaLR 0 346 3 6 953 1835 112 15 60 chr9 48321814 48322147 -75754025 - ORR1A4 LTR MaLR -11 318 1 6 953 327 307 69 59 chr9 48323338 48323542 -75752630 - MER110 LTR ERV1 -6 485 280 6 953 449 215 9 45 chr9 48324044 48324156 -75752016 + RSINE1 SINE B4 11 118 -47 6 953 477 0 0 0 chr9 48324164 48324217 -75751955 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 953 318 50 0 0 chr9 48324217 48324256 -75751916 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 953 191 83 83 0 chr9 48324256 48324292 -75751880 + GA-rich Low_complexity Low_complexity 5 43 0 6 953 243 188 0 0 chr9 48325377 48325425 -75750747 + A-rich Low_complexity Low_complexity 2 49 0 6 953 29 0 0 0 chr9 48326514 48326543 -75749629 + AT_rich Low_complexity Low_complexity 1 29 0 6 953 3326 92 77 19 chr9 48326733 48327318 -75748854 - RLTR6_Mm LTR ERV1 -35 619 1 6 953 8894 42 63 4 chr9 48327318 48330080 -75746092 - MMVL30-int LTR ERV1 0 3698 772 6 953 379 34 271 0 chr9 48330084 48330143 -75746029 - MMVL30-int LTR ERV1 -2852 846 772 6 953 273 115 19 0 chr9 48330491 48330543 -75745629 - MMVL30-int LTR ERV1 -2922 377 325 6 953 6033 23 102 20 chr9 48330569 48331335 -75744837 - RLTR6-int LTR ERV1 -6949 829 1 6 953 3496 89 74 18 chr9 48331336 48331941 -75744231 - RLTR6_Mm LTR ERV1 -15 639 1 6 953 1183 48 0 13 chr9 48332096 48332245 -75743927 + B1_Mm SINE Alu 1 147 0 6 953 697 224 11 0 chr9 48332267 48332414 -75743758 + B2_Mm2 SINE B2 1 160 -38 6 953 1136 251 77 28 chr9 48332467 48332820 -75743352 - MTEa LTR MaLR -9 370 1 6 953 1000 154 0 0 chr9 48333289 48333438 -75742734 + B1_Mur4 SINE Alu 2 150 0 6 953 768 263 24 0 chr9 48333655 48333860 -75742312 - B3 SINE B2 -6 210 1 6 953 1674 156 89 30 chr9 48333864 48334202 -75741970 + ORR1B2 LTR MaLR 1 358 -9 6 953 1313 74 4 9 chr9 48334246 48334476 -75741696 + (TTTC)n Simple_repeat Simple_repeat 1 228 0 6 953 2561 167 58 33 chr9 48334540 48334627 -75741545 - RLTR24 LTR ERV1 -2 527 442 6 953 333 47 0 0 chr9 48334627 48334670 -75741502 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 953 2561 167 58 33 chr9 48334670 48335096 -75741076 - RLTR24 LTR ERV1 -88 441 3 6 953 1673 250 55 89 chr9 48335255 48336019 -75740153 - RLTR19-int LTR ERVK -1803 4334 3597 6 953 1075 92 0 0 chr9 48336034 48336187 -75739985 + B2_Mm2 SINE B2 2 154 -41 6 953 477 0 0 0 chr9 48336188 48336241 -75739931 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 6 953 259 254 0 31 chr9 48336258 48336323 -75739849 - RLTR19-int LTR ERVK -2551 3586 3524 6 953 21 0 0 0 chr9 48336345 48336366 -75739806 + AT_rich Low_complexity Low_complexity 1 21 0 6 953 517 232 111 72 chr9 48336537 48336836 -75739336 - RLTR42-int LTR ERVK -2944 3193 2906 6 953 278 209 45 0 chr9 48336921 48336988 -75739184 - RLTR42-int LTR ERVK -3263 2874 2805 6 953 455 277 110 107 chr9 48337065 48337384 -75738788 - MYSERV6-int LTR ERVK -1470 7489 7170 6 953 549 202 0 34 chr9 48337381 48337499 -75738673 - RLTR42-int LTR ERVK -3538 1984 1871 6 953 1435 189 7 0 chr9 48337713 48337983 -75738189 - RLTR14 LTR ERV1 -64 318 47 6 953 255 191 0 0 chr9 48338116 48338184 -75737988 + CT-rich Low_complexity Low_complexity 2 69 0 6 953 194 62 31 0 chr9 48338386 48338418 -75737754 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 953 560 202 9 9 chr9 48338461 48338571 -75737601 - URR1B DNA MER1_type -115 110 1 6 953 2429 137 119 58 chr9 48338672 48339169 -75737003 - RLTR24 LTR ERV1 0 529 3 6 953 829 281 65 100 chr9 48339309 48339401 -75736771 + MT2B LTR ERVL 1 83 -450 6 953 180 77 0 0 chr9 48339401 48339427 -75736745 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 953 1018 225 22 83 chr9 48339427 48339871 -75736301 + MT2B LTR ERVL 84 581 -3 6 953 760 184 168 5 chr9 48340171 48340368 -75735804 + ORR1D2-int LTR MaLR 1142 1370 0 6 953 1124 239 144 6 chr9 48340368 48340634 -75735538 + ORR1D2 LTR MaLR 1 303 -67 6 953 1491 142 0 17 chr9 48340634 48340864 -75735308 - URR1A DNA MER1_type 0 226 1 6 953 1124 239 144 6 chr9 48340864 48340916 -75735256 + ORR1D2 LTR MaLR 304 362 -8 6 953 1073 142 13 75 chr9 48340916 48341144 -75735028 + ORR1A4 LTR MaLR 1 214 -115 6 953 984 121 0 8 chr9 48341153 48341421 -75734751 + (TG)n Simple_repeat Simple_repeat 1 265 0 6 953 1038 282 48 31 chr9 48341952 48342303 -75733869 + ORR1E LTR MaLR 1 357 -2 6 953 366 277 52 73 chr9 48342841 48342921 -75733251 - MTE2a LTR MaLR 0 379 305 6 953 522 0 0 0 chr9 48342921 48342979 -75733193 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 953 327 65 0 0 chr9 48342980 48343026 -75733146 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 953 366 277 52 73 chr9 48343026 48343134 -75733038 - MTE2a LTR MaLR -75 304 193 6 953 289 289 64 32 chr9 48343066 48343191 -75732981 + MLT1C LTR MaLR 251 379 -88 6 953 288 0 0 0 chr9 48343243 48343275 -75732897 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 953 487 232 70 18 chr9 48343279 48343393 -75732779 - RSINE1 SINE B4 -38 127 8 6 953 258 292 15 0 chr9 48343456 48343521 -75732651 + ID4_ SINE ID 12 77 -6 6 953 26 88 0 0 chr9 48343526 48343594 -75732578 + AT_rich Low_complexity Low_complexity 1 68 0 6 953 28 71 0 0 chr9 48343774 48343830 -75732342 + AT_rich Low_complexity Low_complexity 1 56 0 6 953 475 275 0 9 chr9 48343962 48344072 -75732100 - B1_Mur3 SINE Alu -8 141 33 6 953 757 208 156 53 chr9 48344233 48344573 -75731599 + RMER17C LTR ERVK 4 378 -32 6 953 922 85 21 0 chr9 48345000 48345141 -75731031 + (TCTCCC)n Simple_repeat Simple_repeat 5 148 0 6 953 213 247 11 33 chr9 48345179 48345271 -75730901 + GA-rich Low_complexity Low_complexity 2 91 0 6 953 586 215 104 0 chr9 48345312 48345447 -75730725 - B1_Mur1 SINE Alu 0 149 1 6 953 365 135 26 39 chr9 48345908 48345985 -75730187 + B1_Mur1 SINE Alu 48 123 -26 6 953 810 58 0 0 chr9 48345993 48346097 -75730075 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 953 324 0 0 0 chr9 48346097 48346132 -75730040 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 953 213 39 0 0 chr9 48346173 48346199 -75729973 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 6 953 630 279 102 0 chr9 48347526 48347723 -75728449 - ID_B1 SINE B4 -7 217 1 6 953 328 247 14 0 chr9 48348141 48348214 -75727958 + B3A SINE B2 49 122 -76 6 953 1011 94 101 45 chr9 48348248 48348426 -75727746 + B2_Mm2 SINE B2 1 188 -7 6 953 21 36 0 0 chr9 48348530 48348558 -75727614 + AT_rich Low_complexity Low_complexity 1 28 0 6 953 991 197 34 19 chr9 48348623 48348830 -75727342 + B3 SINE B2 1 210 -6 6 953 556 241 9 0 chr9 48348919 48349031 -75727141 - B1_Mur1 SINE Alu -31 118 6 6 953 876 259 25 8 chr9 48349079 48349317 -75726855 + B4 SINE B4 1 242 -50 6 953 561 68 0 0 chr9 48349318 48349392 -75726780 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 953 204 97 0 0 chr9 48349984 48350015 -75726157 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 953 606 285 85 0 chr9 48350018 48350183 -75725989 + B4 SINE B4 86 264 -28 6 953 440 207 76 17 chr9 48350317 48350435 -75725737 - RLTR22_Mur LTR ERVK -134 1714 1590 6 953 1629 210 25 28 chr9 48350515 48350911 -75725261 - RLTR22_Mur LTR ERVK -1039 809 415 6 953 426 210 29 20 chr9 48350970 48351072 -75725100 + RLTR23 LTR ERV1 328 430 0 6 953 628 271 126 88 chr9 48351117 48351642 -75724530 - L1ME2 LINE L1 -329 5835 5291 6 953 249 139 11 5 chr9 48351664 48351710 -75724462 - L1M5 LINE L1 -912 5234 5190 6 953 835 227 8 120 chr9 48351710 48351960 -75724212 - ID_B1 SINE B4 -1 223 2 6 953 225 279 96 48 chr9 48351960 48352080 -75724092 - L1M5 LINE L1 -957 5189 5060 6 953 339 292 190 12 chr9 48352122 48352285 -75723887 - MER21B LTR ERV1 -47 816 625 6 953 243 194 130 29 chr9 48352356 48352425 -75723747 + ORR1D1 LTR MaLR 1 76 -298 6 953 712 243 7 0 chr9 48352470 48352614 -75723558 + B3A SINE B2 2 146 -52 6 953 498 17 0 0 chr9 48352616 48352675 -75723497 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 953 2861 102 38 24 chr9 48352700 48353124 -75723048 + RLTR23 LTR ERV1 1 430 0 6 953 361 281 151 42 chr9 48353193 48353505 -75722667 - L1M5 LINE L1 -2121 4025 3680 6 953 522 0 0 0 chr9 48353623 48353681 -75722491 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 953 2405 127 68 0 chr9 48353692 48354061 -75722111 - ORR1B1 LTR MaLR 0 394 1 6 953 180 0 0 0 chr9 48354324 48354344 -75721828 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 953 198 0 0 0 chr9 48355135 48355157 -75721015 + (T)n Simple_repeat Simple_repeat 1 22 0 7 953 610 264 45 53 chr9 48355199 48355443 -75720729 - RMER15 LTR ERVL -70 505 264 7 953 210 271 167 76 chr9 48355774 48355906 -75720266 - B3A SINE B2 -1 197 54 7 953 677 287 0 24 chr9 48355794 48355962 -75720210 - RSINE1 SINE B4 0 165 2 7 953 1730 250 34 96 chr9 48356485 48356865 -75719307 + L1MC2 LINE L1 4738 5082 -1064 7 953 341 319 8 8 chr9 48356865 48356982 -75719190 - PB1D10 SINE Alu 0 117 1 7 953 2283 229 25 76 chr9 48356982 48357811 -75718361 + L1MC2 LINE L1 5083 5877 -467 7 953 5867 67 12 5 chr9 48357839 48358585 -75717587 + L1_Mus1 LINE L1 5799 6545 -22 7 953 1041 90 21 0 chr9 48358585 48358729 -75717443 + B1_Mus2 SINE Alu 1 147 0 7 953 5867 67 12 5 chr9 48358729 48358746 -75717426 + L1_Mus1 LINE L1 6546 6567 0 7 953 451 230 31 54 chr9 48358820 48358949 -75717223 + L1MC2 LINE L1 5879 6004 -329 7 953 1769 132 9 65 chr9 48358951 48359291 -75716881 - ORR1A4 LTR MaLR -8 321 1 7 953 727 242 0 45 chr9 48359315 48359471 -75716701 - B1_Mur1 SINE Alu 0 149 1 7 953 569 286 122 27 chr9 48359472 48359767 -75716405 + L1MC2 LINE L1 6020 6342 -2 7 953 497 233 8 32 chr9 48359779 48359903 -75716269 - B1_Mur2 SINE Alu 0 149 29 7 953 231 260 33 171 chr9 48359995 48360176 -75715996 + B4A SINE B4 41 196 -96 7 953 513 0 0 0 chr9 48360265 48360322 -75715850 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 953 221 229 32 16 chr9 48361026 48361088 -75715084 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 7 953 541 289 8 0 chr9 48361096 48361217 -75714955 - RSINE1 SINE B4 -40 125 4 7 953 289 278 62 0 chr9 48362052 48362149 -75714023 - MER5A DNA MER1_type -18 171 69 7 953 486 0 0 0 chr9 48362190 48362244 -75713928 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 953 416 267 22 0 chr9 48362247 48362337 -75713835 - RSINE1 SINE B4 -24 141 50 7 953 204 40 0 0 chr9 48362420 48362445 -75713727 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 953 267 266 63 120 chr9 48362486 48362644 -75713528 + B1F2 SINE Alu 1 149 0 7 953 348 111 0 0 chr9 48363270 48363324 -75712848 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 953 721 276 92 29 chr9 48363746 48364019 -75712153 - B4A SINE B4 0 292 3 7 953 470 259 134 5 chr9 48364020 48364214 -75711958 - L1MA9 LINE L1 -182 6130 5912 7 119 751 191 30 0 chr9 48365455 48365586 -75710586 + B1_Mus2 SINE Alu 1 135 -12 7 954 326 146 49 0 chr9 48365586 48365668 -75710504 + CT-rich Low_complexity Low_complexity 1 86 0 7 954 249 98 0 0 chr9 48365719 48365760 -75710412 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 954 582 160 0 36 chr9 48365789 48365899 -75710273 - B1_Mur2 SINE Alu -2 147 42 7 954 233 164 0 141 chr9 48365836 48365907 -75710265 - MT2B LTR ERVL -344 257 197 7 954 182 225 12 0 chr9 48365910 48365990 -75710182 + C-rich Low_complexity Low_complexity 1 81 0 7 954 216 278 19 0 chr9 48365993 48366047 -75710125 - PB1D9 SINE Alu -65 55 1 7 954 282 196 20 0 chr9 48366115 48366166 -75710006 + PB1D7 SINE Alu 38 89 -31 7 954 417 123 0 0 chr9 48366429 48366494 -75709678 + (TTTTC)n Simple_repeat Simple_repeat 4 68 0 7 954 198 0 0 0 chr9 48366550 48366572 -75709600 + (TGG)n Simple_repeat Simple_repeat 3 24 0 7 954 448 280 0 18 chr9 48366590 48366699 -75709473 - RSINE1 SINE B4 -56 109 3 7 954 249 234 25 25 chr9 48367110 48367189 -75708983 + RLTR12B LTR ERVK 447 525 -3 7 954 236 268 50 30 chr9 48367189 48367263 -75708909 + RLTR12B LTR ERVK 450 525 -3 7 954 1575 125 19 74 chr9 48367300 48367612 -75708560 - Lx4B LINE L1 -5 7053 6759 7 954 317 301 0 0 chr9 48367772 48367855 -75708317 - RSINE1 SINE B4 -81 84 2 7 954 992 258 169 46 chr9 48368158 48368252 -75707920 - L1MC1 LINE L1 -380 6128 6035 7 954 593 47 12 0 chr9 48368252 48368337 -75707835 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 954 226 269 45 0 chr9 48368337 48368404 -75707768 - tRNA-Ala-GCA tRNA tRNA -3 72 3 7 954 992 258 169 46 chr9 48368404 48368913 -75707259 - L1MC1 LINE L1 -474 6034 5451 7 954 1084 158 74 0 chr9 48368918 48369120 -75707052 + RLTR16 LTR ERVK 1 217 -288 7 954 251 328 117 17 chr9 48369174 48369354 -75706818 - L1MC1 LINE L1 -1066 5255 5058 7 954 1796 245 101 19 chr9 48369338 48369975 -75706197 - L1MC1 LINE L1 -2092 4229 3541 7 954 983 259 126 5 chr9 48370002 48370414 -75705758 - L1MC1 LINE L1 -3002 3319 2858 7 954 465 204 0 0 chr9 48370455 48370548 -75705624 - B3A SINE B2 -105 93 1 7 954 919 255 136 31 chr9 48370563 48371157 -75705015 - L1MC1 LINE L1 -3662 2659 1984 7 954 1152 104 21 16 chr9 48371720 48371906 -75704266 + B2_Mm2 SINE B2 8 194 -1 7 954 431 287 0 8 chr9 48371934 48372057 -75704115 + B1F SINE Alu 12 133 -16 7 954 247 306 24 0 chr9 48372069 48372154 -75704018 + GA-rich Low_complexity Low_complexity 3 89 0 7 954 522 46 0 0 chr9 48372154 48372219 -75703953 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 7 954 22 0 0 0 chr9 48372230 48372252 -75703920 + AT_rich Low_complexity Low_complexity 1 22 0 7 954 791 200 14 0 chr9 48372262 48372402 -75703770 - B1_Mur2 SINE Alu -7 142 1 7 954 583 226 130 16 chr9 48372403 48372587 -75703585 - L1MC1 LINE L1 -4787 1721 1517 7 954 183 80 0 0 chr9 48372800 48372825 -75703347 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 954 206 334 59 15 chr9 48373169 48373283 -75702889 - L2a LINE L2 -43 3383 3242 7 954 205 182 0 0 chr9 48374514 48374547 -75701625 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 7 954 201 176 0 0 chr9 48374659 48374693 -75701479 + A-rich Low_complexity Low_complexity 1 34 0 7 954 290 212 15 0 chr9 48375383 48375449 -75700723 - MTEa LTR MaLR 0 379 313 7 954 197 108 27 0 chr9 48375881 48375918 -75700254 + (GGGGA)n Simple_repeat Simple_repeat 4 41 0 7 954 774 251 40 84 chr9 48377052 48377348 -75698824 - ORR1E LTR MaLR -6 353 71 7 954 805 263 40 9 chr9 48377576 48377802 -75698370 + 7SK RNA RNA 7 239 -92 7 954 14556 74 31 18 chr9 48377884 48380647 -75695525 + L1VL2 LINE L1 175 2984 -631 7 954 589 327 58 39 chr9 48381109 48381367 -75694805 - MER82 DNA MER2_type 0 653 391 7 954 3972 167 18 186 chr9 48381375 48382703 -75693469 + RLTR25A LTR ERVK 1 1028 0 7 954 1368 67 0 0 chr9 48382758 48382938 -75693234 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 954 1192 72 0 37 chr9 48382941 48383082 -75693090 + (TTCTCC)n Simple_repeat Simple_repeat 4 138 0 7 954 1284 89 0 0 chr9 48383082 48383262 -75692910 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 954 1192 72 0 37 chr9 48383262 48383307 -75692865 + (TTCTCC)n Simple_repeat Simple_repeat 1 45 0 7 954 405 218 16 8 chr9 48383297 48383422 -75692750 + CT-rich Low_complexity Low_complexity 2 127 0 7 954 719 236 49 8 chr9 48383429 48383617 -75692555 - B3A SINE B2 -15 201 6 7 954 515 254 15 0 chr9 48383637 48383767 -75692405 - MER82 DNA MER2_type -331 322 191 7 954 847 291 42 42 chr9 48384002 48384286 -75691886 + B4 SINE B4 3 286 -6 7 954 204 0 83 0 chr9 48384327 48384363 -75691809 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 954 357 283 126 73 chr9 48384978 48385184 -75690988 + B4 SINE B4 1 217 -75 7 954 252 250 97 0 chr9 48385183 48385255 -75690917 + RSINE1 SINE B4 74 152 -13 7 954 456 19 0 0 chr9 48385261 48385314 -75690858 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 954 5920 39 4 0 chr9 48385346 48386040 -75690132 - L1Md_F2 LINE L1 0 6582 5886 7 954 233 329 0 52 chr9 48386124 48386201 -75689971 - MLT1A0 LTR MaLR -221 144 72 7 954 3651 38 0 0 chr9 48386547 48386974 -75689198 - L1Md_T LINE L1 0 6582 6156 7 954 2468 68 9 58 chr9 48387827 48388171 -75688001 - ORR1A2 LTR MaLR 0 327 1 7 954 548 222 45 19 chr9 48388648 48388804 -75687368 - B3 SINE B2 -5 211 52 7 954 587 203 8 17 chr9 48388952 48389072 -75687100 - PB1D9 SINE Alu 0 120 2 7 954 346 364 52 42 chr9 48389091 48389401 -75686771 - LTR16A1 LTR ERVL -101 355 43 7 954 342 67 0 0 chr9 48389402 48389447 -75686725 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 954 453 19 0 0 chr9 48389553 48389607 -75686565 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 954 188 250 0 0 chr9 48389819 48389863 -75686309 + L4 LINE RTE 1785 1828 -201 7 954 224 126 81 0 chr9 48389889 48389976 -75686196 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 7 954 597 64 0 0 chr9 48389977 48390055 -75686117 + (TCTG)n Simple_repeat Simple_repeat 3 80 0 7 954 1808 152 108 15 chr9 48390560 48390894 -75685278 + ORR1B2 LTR MaLR 1 365 -2 7 954 2090 140 14 0 chr9 48391448 48391797 -75684375 - RLTR15 LTR ERVK 0 359 6 7 954 1839 200 80 93 chr9 48391935 48392113 -75684059 - Lx7 LINE L1 -16 7680 7489 7 954 1058 135 6 0 chr9 48392113 48392291 -75683881 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 7 954 1839 200 80 93 chr9 48392291 48392663 -75683509 - Lx7 LINE L1 -208 7488 7137 7 954 306 301 52 103 chr9 48392775 48393008 -75683164 + MLT2B3 LTR ERVL 334 554 0 7 954 180 77 0 0 chr9 48393198 48393224 -75682948 + (CCCCAA)n Simple_repeat Simple_repeat 3 28 0 7 954 768 216 115 10 chr9 48393291 48393483 -75682689 - ID_B1 SINE B4 -5 219 8 7 954 994 246 147 40 chr9 48395027 48395375 -75680797 - MTD LTR MaLR -34 385 1 7 954 6951 26 6 1 chr9 48396549 48397349 -75678823 - L1Md_F3 LINE L1 -3 6581 5778 7 954 790 243 74 156 chr9 48397498 48397903 -75678269 + MTE2a LTR MaLR 1 372 -7 7 954 440 96 163 35 chr9 48398629 48398715 -75677457 + PB1D9 SINE Alu 23 119 -1 7 954 201 228 38 18 chr9 48399380 48399448 -75676724 - MIRc SINE MIR -104 158 89 7 954 650 256 68 53 chr9 48400893 48401099 -75675073 + ID_B1 SINE B4 1 209 -15 7 954 295 267 69 0 chr9 48401693 48401794 -75674378 + ORR1E LTR MaLR 4 111 -248 7 954 785 264 134 10 chr9 48402571 48402899 -75673273 + L1MB7 LINE L1 5375 5756 -417 7 954 590 278 69 79 chr9 48402961 48403266 -75672906 + L1MB7 LINE L1 5864 6165 -19 7 954 408 281 38 38 chr9 48403290 48403423 -75672749 + B1F1 SINE Alu 1 133 -16 7 954 207 220 0 0 chr9 48403423 48403473 -75672699 + GA-rich Low_complexity Low_complexity 2 51 0 7 954 301 122 0 0 chr9 48403564 48403613 -75672559 + B3A SINE B2 1 49 -149 7 954 507 168 0 34 chr9 48403832 48404011 -75672161 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 8 954 287 247 98 33 chr9 48404152 48404244 -75671928 + RMER10A LTR ERVL 318 415 -27 8 954 412 279 26 85 chr9 48404257 48404410 -75671762 + B3A SINE B2 55 198 0 8 954 183 80 0 0 chr9 48404851 48404876 -75671296 + (T)n Simple_repeat Simple_repeat 1 25 0 8 954 581 261 12 7 chr9 48405701 48405849 -75670323 + ID_B1 SINE B4 80 225 -67 8 954 254 336 113 16 chr9 48405966 48406090 -75670082 - L2b LINE L2 0 3375 3240 8 954 267 190 0 65 chr9 48406437 48406499 -75669673 + B1_Mus2 SINE Alu 2 59 -88 8 954 741 155 23 15 chr9 48406499 48406630 -75669542 + (CAGAGA)n Simple_repeat Simple_repeat 5 136 0 8 954 447 208 21 0 chr9 48406630 48406726 -75669446 + B1_Mur3 SINE Alu 45 142 -7 8 954 300 260 135 0 chr9 48406787 48406883 -75669289 + PB1D10 SINE Alu 3 111 -6 8 954 421 278 35 9 chr9 48407710 48407826 -75668346 - B1F1 SINE Alu -29 120 2 8 954 1011 200 5 20 chr9 48408209 48408408 -75667764 - B3 SINE B2 -19 197 2 8 954 183 311 0 32 chr9 48408408 48408471 -75667701 - MER5A DNA MER1_type -113 76 16 8 954 516 16 0 0 chr9 48408567 48408628 -75667544 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 954 490 244 45 45 chr9 48408628 48408754 -75667418 - B3A SINE B2 -46 152 25 8 954 314 283 0 13 chr9 48409849 48410003 -75666169 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 8 954 918 167 0 0 chr9 48410015 48410195 -75665977 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 8 954 987 145 0 0 chr9 48410221 48410393 -75665779 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 8 954 305 190 12 25 chr9 48410451 48410532 -75665640 + L1M2 LINE L1 4329 4408 -1735 8 954 27 29 0 0 chr9 48410533 48410567 -75665605 + AT_rich Low_complexity Low_complexity 1 34 0 8 954 769 263 71 73 chr9 48410567 48411072 -75665100 + L1M2 LINE L1 4397 4900 -1243 8 954 560 335 25 16 chr9 48411829 48412072 -75664100 + B4A SINE B4 47 291 -1 8 954 21 0 0 0 chr9 48412094 48412115 -75664057 + AT_rich Low_complexity Low_complexity 1 21 0 8 954 702 105 0 0 chr9 48412219 48412324 -75663848 + (TTCC)n Simple_repeat Simple_repeat 4 108 0 8 954 377 44 0 0 chr9 48412324 48412369 -75663803 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 954 358 217 24 73 chr9 48412369 48412493 -75663679 - B1F SINE Alu -1 148 31 8 954 259 299 81 20 chr9 48413603 48413702 -75662470 + Lx8 LINE L1 7043 7147 -326 8 954 606 270 55 22 chr9 48413904 48414086 -75662086 + ID_B1 SINE B4 2 189 -35 8 954 321 312 111 0 chr9 48415125 48415269 -75660903 + RSINE1 SINE B4 6 165 0 8 954 1200 61 0 0 chr9 48415419 48415567 -75660605 + B1_Mus1 SINE Alu 1 148 0 8 954 280 320 71 13 chr9 48415574 48415729 -75660443 - MIR SINE MIR -7 255 92 8 954 1935 311 83 48 chr9 48415779 48416081 -75660091 + L1ME3B LINE L1 3785 4091 -2055 8 954 604 186 104 37 chr9 48416081 48416215 -75659957 - B1_Mur1 SINE Alu -2 147 5 8 954 1935 306 88 52 chr9 48416215 48417342 -75658830 + L1ME3B LINE L1 4092 5258 -888 8 954 627 217 0 0 chr9 48417342 48417462 -75658710 - PB1D9 SINE Alu 0 120 1 8 954 1935 306 88 52 chr9 48417462 48417588 -75658584 + L1ME3B LINE L1 5259 5399 -747 8 954 1465 243 36 3 chr9 48417835 48418194 -75657978 - MTEa LTR MaLR -8 371 1 8 954 312 240 79 8 chr9 48418310 48418436 -75657736 + L1ME3B LINE L1 5870 6004 -236 8 954 1286 68 18 0 chr9 48418672 48418999 -75657173 + (TCTA)n Simple_repeat Simple_repeat 1 333 0 8 954 937 17 17 0 chr9 48419039 48419158 -75657014 + (TCTA)n Simple_repeat Simple_repeat 3 123 0 8 954 628 228 95 116 chr9 48419677 48419829 -75656343 + B3A SINE B2 2 154 -41 8 954 458 17 17 0 chr9 48419829 48419888 -75656284 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 954 387 0 0 0 chr9 48419888 48419930 -75656242 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 954 385 228 95 116 chr9 48419930 48419965 -75656207 + B2_Mm2 SINE B2 155 185 -10 8 954 710 178 0 14 chr9 48421112 48421396 -75654776 + (CA)n Simple_repeat Simple_repeat 1 279 0 8 954 855 233 57 9 chr9 48421420 48421632 -75654540 - ID_B1 SINE B4 -2 222 1 8 954 10041 114 15 5 chr9 48421902 48424196 -75651976 + Lx LINE L1 4340 6653 -1 8 954 441 0 0 0 chr9 48424522 48424571 -75651601 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 954 551 252 16 0 chr9 48424575 48424702 -75651470 - RSINE1 SINE B4 -35 130 2 8 954 441 0 0 0 chr9 48425002 48425051 -75651121 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 954 182 186 23 0 chr9 48425287 48425330 -75650842 - L2b LINE L2 -243 3132 3089 8 954 353 279 54 8 chr9 48427079 48427209 -75648963 - RMER15 LTR ERVL -2 573 438 8 954 251 73 49 0 chr9 48427246 48427287 -75648885 + (GTTTG)n Simple_repeat Simple_repeat 3 45 0 8 954 274 254 34 60 chr9 48427298 48427415 -75648757 - RMER15 LTR ERVL -126 449 336 8 954 389 293 59 104 chr9 48427823 48427842 -75648330 - B2_Mm2 SINE B2 -2 193 177 8 954 651 26 0 0 chr9 48427842 48427919 -75648253 + (TC)n Simple_repeat Simple_repeat 2 78 0 8 954 456 19 0 0 chr9 48427919 48427971 -75648201 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 954 719 268 38 31 chr9 48427971 48428152 -75648020 - B3 SINE B2 -19 176 1 8 954 458 270 0 17 chr9 48428180 48428297 -75647875 - B1F SINE Alu -31 118 4 8 954 243 260 0 6 chr9 48428686 48428753 -75647419 + PB1 SINE Alu 74 146 -3 8 954 182 262 0 71 chr9 48429359 48429429 -75646743 - MIRm SINE MIR -94 182 118 8 954 330 26 0 0 chr9 48430562 48430601 -75645571 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 8 954 304 317 87 81 chr9 48430687 48430996 -75645176 - ORR1D2 LTR MaLR -59 311 1 8 954 1793 118 128 3 chr9 48431062 48431352 -75644820 + ORR1A3 LTR MaLR 1 326 0 8 954 298 43 106 0 chr9 48431352 48431399 -75644773 + ORR1A3-int LTR MaLR 1 52 -1740 8 954 7736 80 2 51 chr9 48431405 48431665 -75644507 - L1_Mus3 LINE L1 -2 6636 6384 8 954 216 67 0 0 chr9 48431665 48431695 -75644477 + (GTTTG)n Simple_repeat Simple_repeat 5 34 0 8 954 30310 102 5 27 chr9 48431695 48433376 -75642796 - L1_Mus3 LINE L1 -255 6383 4738 8 954 225 0 0 0 chr9 48433376 48433401 -75642771 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 954 30310 123 7 3 chr9 48433401 48433504 -75642668 - L1_Mus3 LINE L1 -1146 4737 4633 8 954 186 43 0 0 chr9 48433504 48433527 -75642645 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 954 30310 128 23 3 chr9 48433527 48437669 -75638503 - L1_Mus3 LINE L1 -1251 4632 400 8 954 8092 157 20 88 chr9 48437669 48438557 -75637615 + ORR1A3-int LTR MaLR 38 836 -956 8 954 7136 60 19 0 chr9 48438557 48439433 -75636739 + RLTR13B1 LTR ERVK 1 893 0 8 954 8092 157 20 88 chr9 48439433 48440426 -75635746 + ORR1A3-int LTR MaLR 837 1792 0 8 954 1948 123 32 0 chr9 48440426 48440734 -75635438 + ORR1A3 LTR MaLR 1 318 -8 8 954 613 321 61 70 chr9 48441310 48441752 -75634420 - Charlie22a DNA MER1_type -3 488 51 8 954 928 249 152 24 chr9 48441723 48442045 -75634127 - MTD LTR MaLR -15 404 6 8 954 1405 244 27 35 chr9 48442383 48442677 -75633495 - MTE2a LTR MaLR 0 379 84 8 954 3571 18 2 0 chr9 48442677 48443072 -75633100 - MTA_Mm LTR MaLR 0 396 1 8 954 1405 244 27 35 chr9 48443072 48443151 -75633021 - MTE2a LTR MaLR -296 83 9 8 954 3614 141 38 29 chr9 48443761 48444389 -75631783 - RLTR26 LTR ERVK -8 634 1 8 954 354 198 40 99 chr9 48444453 48444554 -75631618 - B1_Mur1 SINE Alu 0 149 55 8 954 400 243 217 6 chr9 48444458 48444625 -75631547 - ID_B1 SINE B4 -1 223 22 8 954 484 244 37 23 chr9 48445017 48445206 -75630966 + MLT1B LTR MaLR 169 375 -33 8 954 671 307 57 12 chr9 48445405 48445652 -75630520 + B4A SINE B4 8 265 -27 8 954 323 193 12 0 chr9 48445684 48445767 -75630405 + CT-rich Low_complexity Low_complexity 2 85 0 8 954 222 62 0 0 chr9 48445769 48445801 -75630371 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 954 277 295 65 0 chr9 48446153 48446292 -75629880 + L1M5 LINE L1 2995 3142 -3004 8 954 233 254 149 0 chr9 48446680 48446747 -75629425 + MER2 DNA MER2_type 93 169 -176 8 954 641 287 181 4 chr9 48446799 48447058 -75629114 - MLT1C LTR MaLR -162 305 1 8 954 584 102 0 10 chr9 48447116 48447215 -75628957 + (TG)n Simple_repeat Simple_repeat 2 99 0 8 954 249 300 10 82 chr9 48447221 48447319 -75628853 - B3 SINE B2 -13 203 113 8 954 602 296 54 79 chr9 48447289 48447480 -75628692 - B4A SINE B4 -20 272 83 8 954 360 0 0 0 chr9 48447480 48447520 -75628652 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 8 954 602 296 54 79 chr9 48447520 48447564 -75628608 - B4A SINE B4 -210 82 39 8 954 1280 197 210 20 chr9 48447564 48447916 -75628256 + MTD LTR MaLR 1 419 0 8 954 602 296 54 79 chr9 48447916 48447958 -75628214 - B4A SINE B4 -254 38 2 8 954 285 208 50 40 chr9 48447962 48448062 -75628110 - MTD LTR MaLR 0 419 319 8 954 237 314 123 37 chr9 48448085 48448247 -75627925 + L1MEf LINE L1 1360 1535 -5799 8 954 411 326 34 14 chr9 48448314 48448460 -75627712 + L1MEf LINE L1 1789 1937 -5165 8 954 346 366 112 31 chr9 48448912 48449332 -75626840 + L1MEf LINE L1 1885 2338 -4764 8 954 347 236 44 11 chr9 48449336 48449426 -75626746 + L1MEf LINE L1 2221 2313 -4695 8 954 1303 227 173 3 chr9 48449783 48450106 -75626066 + MTEb LTR MaLR 2 379 0 8 954 326 291 48 34 chr9 48450536 48450682 -75625490 + L1MC5 LINE L1 7518 7665 -296 8 954 1028 196 108 0 chr9 48450693 48450887 -75625285 - B3 SINE B2 -1 215 1 8 954 581 261 35 7 chr9 48450950 48451093 -75625079 - B1_Mur2 SINE Alu 0 149 3 8 954 1545 228 30 35 chr9 48451384 48451752 -75624420 + MTEb LTR MaLR 1 366 -13 8 954 668 222 8 16 chr9 48451863 48451991 -75624181 - RSINE1 SINE B4 -37 128 2 8 954 249 278 119 36 chr9 48452239 48452433 -75623739 - L2a LINE L2 -297 3129 2920 8 954 953 268 5 0 chr9 48452530 48452724 -75623448 - ORR1E LTR MaLR -160 199 5 8 954 201 94 0 0 chr9 48453332 48453364 -75622808 + (T)n Simple_repeat Simple_repeat 1 32 0 8 954 245 353 70 29 chr9 48454709 48454881 -75621291 - MIRc SINE MIR -88 180 2 8 954 504 0 0 0 chr9 48455402 48455458 -75620714 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 954 576 338 50 50 chr9 48456413 48456690 -75619482 - L2b LINE L2 -1 3374 3098 8 954 225 0 0 0 chr9 48457928 48457953 -75618219 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 8 954 531 45 0 0 chr9 48458260 48458326 -75617846 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 954 465 279 5 161 chr9 48458975 48459087 -75617085 + RSINE1 SINE B4 3 106 -59 8 954 777 233 72 21 chr9 48459087 48459280 -75616892 + B3 SINE B2 2 204 -12 8 954 465 279 5 161 chr9 48459280 48459359 -75616813 + RSINE1 SINE B4 107 164 -1 8 954 425 236 0 0 chr9 48459412 48459484 -75616688 + RSINE1 SINE B4 2 73 -92 8 954 346 224 171 8 chr9 48459544 48459661 -75616511 + RSINE1 SINE B4 2 137 -28 8 954 302 300 8 30 chr9 48460275 48460409 -75615763 + G-rich Low_complexity Low_complexity 3 133 0 8 954 366 143 0 0 chr9 48460586 48460663 -75615509 + (A)n Simple_repeat Simple_repeat 1 77 0 8 954 195 167 0 0 chr9 48460742 48460784 -75615388 + (TA)n Simple_repeat Simple_repeat 1 42 0 9 954 218 164 18 18 chr9 48461628 48461684 -75614488 + (TA)n Simple_repeat Simple_repeat 1 56 0 9 954 579 29 0 0 chr9 48462294 48462363 -75613809 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 954 216 97 0 0 chr9 48463916 48463947 -75612225 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 9 954 729 0 0 0 chr9 48464463 48464544 -75611628 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 9 954 208 322 0 0 chr9 48465099 48465158 -75611014 + T-rich Low_complexity Low_complexity 1 59 0 9 954 255 293 313 0 chr9 48466658 48466808 -75609364 - MER63A DNA AcHobo -12 198 2 9 954 973 137 27 7 chr9 48467302 48467449 -75608723 + B1_Mur4 SINE Alu 1 150 0 9 954 21 0 0 0 chr9 48467450 48467471 -75608701 + AT_rich Low_complexity Low_complexity 1 21 0 9 954 842 219 107 0 chr9 48467471 48467649 -75608523 - B3A SINE B2 -1 197 1 9 954 321 280 12 123 chr9 48468689 48468860 -75607312 - MIR SINE MIR -116 152 1 9 954 680 177 17 6 chr9 48469996 48470172 -75606000 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 9 954 207 167 0 0 chr9 48470177 48470219 -75605953 + CT-rich Low_complexity Low_complexity 4 45 0 9 954 526 150 29 18 chr9 48470278 48470448 -75605724 + (TCTG)n Simple_repeat Simple_repeat 1 172 0 9 954 471 35 0 0 chr9 48472278 48472335 -75603837 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 954 405 0 0 0 chr9 48472335 48472379 -75603793 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 954 315 0 0 0 chr9 48472394 48472429 -75603743 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 9 954 804 154 15 8 chr9 48473948 48474079 -75602093 - B1_Mur4 SINE Alu -13 137 6 9 954 463 282 77 61 chr9 48475226 48475407 -75600765 - MIRb SINE MIR -50 218 35 9 954 805 244 90 47 chr9 48475466 48475745 -75600427 - B4A SINE B4 -1 291 1 9 954 556 327 100 44 chr9 48476751 48477090 -75599082 + MLT1A0 LTR MaLR 1 358 -7 9 954 206 139 0 65 chr9 48477531 48477577 -75598595 + A-rich Low_complexity Low_complexity 3 45 0 9 954 186 361 30 30 chr9 48478010 48478110 -75598062 + MIRc SINE MIR 38 137 -131 9 954 337 234 52 0 chr9 48478252 48478329 -75597843 - MER91A DNA Tip100 -95 101 21 9 954 1528 203 160 8 chr9 48478866 48479223 -75596949 + MTC LTR MaLR 1 411 -10 9 954 913 255 20 0 chr9 48480243 48480443 -75595729 + B3 SINE B2 1 204 -12 9 954 219 309 0 0 chr9 48485781 48485849 -75590323 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 954 517 295 208 43 chr9 48487466 48487721 -75588451 + Charlie4a DNA MER1_type 30 338 -170 9 954 200 35 35 0 chr9 48487721 48487750 -75588422 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 9 954 307 302 40 140 chr9 48487751 48487901 -75588271 - B1F1 SINE Alu -13 136 2 9 954 517 295 208 43 chr9 48487901 48487994 -75588178 + Charlie4a DNA MER1_type 339 438 -70 9 954 1251 34 0 7 chr9 48488011 48488157 -75588015 - B1_Mm SINE Alu 0 147 3 9 954 594 0 0 0 chr9 48488198 48488264 -75587908 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 954 257 302 99 13 chr9 48488386 48488537 -75587635 + L1MB3 LINE L1 5976 6139 -44 9 954 399 276 59 107 chr9 48488992 48489179 -75586993 + ID_B1 SINE B4 47 224 0 9 954 468 275 76 8 chr9 48489048 48489180 -75586992 + B1F1 SINE Alu 9 149 0 9 954 763 152 78 21 chr9 48490785 48490926 -75585246 - B1_Mur3 SINE Alu 0 149 1 9 954 253 313 125 30 chr9 48491418 48491586 -75584586 + L2a LINE L2 3242 3425 -1 9 954 759 318 40 88 chr9 48492010 48492407 -75583765 + MTEa LTR MaLR 2 379 0 9 954 532 250 68 107 chr9 48494507 48494713 -75581459 - B3A SINE B2 0 198 1 9 954 384 22 0 0 chr9 48494725 48494770 -75581402 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 954 236 140 73 18 chr9 48494836 48494945 -75581227 + (TA)n Simple_repeat Simple_repeat 1 115 0 9 954 189 211 0 0 chr9 48495147 48495199 -75580973 + (CATA)n Simple_repeat Simple_repeat 4 55 0 9 955 200 275 89 99 chr9 48496961 48497163 -75579009 + L2b LINE L2 3088 3287 -88 9 955 1839 149 103 38 chr9 48497661 48498031 -75578141 + ORR1B1 LTR MaLR 1 394 0 9 955 489 271 91 32 chr9 48498413 48498600 -75577572 + B3A SINE B2 1 198 0 9 955 312 91 0 0 chr9 48498967 48499011 -75577161 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 9 955 1105 72 98 0 chr9 48499022 48499175 -75576997 - B2_Mm2 SINE B2 -26 169 2 9 955 471 300 96 17 chr9 48499214 48499518 -75576654 + MTEb LTR MaLR 5 364 -15 9 955 243 0 0 0 chr9 48500087 48500114 -75576058 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 955 549 80 0 0 chr9 48500114 48500188 -75575984 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 955 315 269 247 0 chr9 48500211 48500304 -75575868 - RSINE1 SINE B4 -46 119 4 3 955 22 35 0 0 chr9 48500307 48500336 -75575836 + AT_rich Low_complexity Low_complexity 1 29 0 4 955 481 317 8 0 chr9 48500606 48500726 -75575446 + RSINE1 SINE B4 16 136 -29 5 955 225 0 0 0 chr9 48500734 48500759 -75575413 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 955 459 0 0 0 chr9 48500759 48500809 -75575363 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 955 203 303 24 84 chr9 48501022 48501105 -75575067 + MIRc SINE MIR 6 83 -185 8 955 279 333 76 17 chr9 48501112 48501231 -75574941 + MIR SINE MIR 51 176 -86 9 955 195 100 0 0 chr9 48502551 48502581 -75573591 + (T)n Simple_repeat Simple_repeat 1 30 0 1 955 306 50 0 0 chr9 48504863 48504903 -75571269 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 955 709 266 101 33 chr9 48506047 48506295 -75569877 - B4A SINE B4 0 292 7 1 955 198 408 10 10 chr9 48506307 48506406 -75569766 - MIRm SINE MIR -123 153 55 1 955 1690 223 74 8 chr9 48507418 48507798 -75568374 - MTD LTR MaLR -8 411 7 1 955 444 19 0 0 chr9 48509932 48509985 -75566187 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 955 1010 300 66 11 chr9 48510073 48510515 -75565657 - L1MB7 LINE L1 -70 6114 5649 1 955 377 278 78 61 chr9 48510552 48510732 -75565440 + B3 SINE B2 7 189 -6 1 955 290 237 0 84 chr9 48511785 48511868 -75564304 - B4A SINE B4 -210 82 7 1 955 226 197 29 29 chr9 48512704 48512772 -75563400 + GA-rich Low_complexity Low_complexity 1 68 0 1 955 195 42 0 0 chr9 48512961 48512985 -75563187 + (CCCCCA)n Simple_repeat Simple_repeat 5 28 0 2 955 459 0 0 0 chr9 48513268 48513319 -75562853 + (TATG)n Simple_repeat Simple_repeat 3 53 0 2 955 344 268 175 0 chr9 48513530 48513627 -75562545 + B3A SINE B2 43 156 -42 2 955 871 250 36 21 chr9 48513672 48513864 -75562308 - ID_B1 SINE B4 -22 202 8 2 955 523 229 0 17 chr9 48514424 48514544 -75561628 + ID_B1 SINE B4 86 203 -21 2 955 354 172 0 59 chr9 48514659 48514727 -75561445 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 2 955 309 354 105 3 chr9 48514978 48515273 -75560899 + L1MC1 LINE L1 5991 6315 -18 2 955 183 42 0 0 chr9 48515829 48515853 -75560319 + (T)n Simple_repeat Simple_repeat 1 24 0 2 955 1103 273 30 107 chr9 48516334 48516736 -75559436 + MTEa LTR MaLR 1 371 -8 2 955 221 281 18 0 chr9 48518118 48518175 -75557997 - MIR SINE MIR 0 262 205 2 955 22 0 0 0 chr9 48518903 48518925 -75557247 + AT_rich Low_complexity Low_complexity 1 22 0 3 955 189 0 0 0 chr9 48520228 48520249 -75555923 + (T)n Simple_repeat Simple_repeat 1 21 0 3 955 1217 61 0 0 chr9 48520249 48520397 -75555775 - B1_Mus1 SINE Alu 0 148 1 3 955 513 0 0 0 chr9 48520431 48520488 -75555684 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 3 955 278 107 18 0 chr9 48520489 48520545 -75555627 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 3 955 498 17 0 0 chr9 48520558 48520617 -75555555 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 955 584 183 1 28 chr9 48520620 48520729 -75555443 - B1_Mur2 SINE Alu -32 117 11 3 955 352 299 8 71 chr9 48520729 48520746 -75555426 - ID_B1 SINE B4 -29 195 78 3 955 282 56 0 0 chr9 48520797 48520833 -75555339 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 955 608 234 110 37 chr9 48520844 48521035 -75555137 - ID_B1 SINE B4 -19 205 1 3 955 182 333 83 0 chr9 48522298 48522382 -75553790 + L2a LINE L2 2764 2854 -565 4 955 375 215 0 0 chr9 48522387 48522452 -75553720 + ID4_ SINE ID 6 70 -13 4 955 216 0 0 0 chr9 48522539 48522563 -75553609 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 955 185 94 31 0 chr9 48522563 48522595 -75553577 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 955 1704 285 64 33 chr9 48522755 48523572 -75552600 - L1MB8 LINE L1 -81 6097 5256 4 955 575 222 0 0 chr9 48523611 48523719 -75552453 + MTEa LTR MaLR 3 110 -269 4 955 372 250 18 55 chr9 48523719 48523829 -75552343 + MTEa LTR MaLR 274 379 0 4 955 318 364 116 37 chr9 48523893 48524324 -75551848 + L2a LINE L2 2954 3418 -8 4 955 267 402 19 51 chr9 48524331 48524546 -75551626 - MIRb SINE MIR -8 260 53 4 955 191 321 60 126 chr9 48524579 48524621 -75551551 + MIRb SINE MIR 93 128 -140 4 955 489 114 364 0 chr9 48524621 48524709 -75551463 + PB1D9 SINE Alu 1 120 0 4 955 191 321 60 126 chr9 48524709 48524848 -75551324 + MIRb SINE MIR 129 262 -6 4 955 266 400 72 19 chr9 48526950 48527159 -75549013 - MIRb SINE MIR -15 253 34 4 955 604 231 23 21 chr9 48527344 48527493 -75548679 + B1F SINE Alu 4 148 -1 5 955 509 245 0 0 chr9 48529804 48529910 -75546262 - RSINE1 SINE B4 -57 108 3 5 955 258 32 0 0 chr9 48532685 48532716 -75543456 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 955 621 0 0 0 chr9 48532716 48532784 -75543388 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 955 188 361 49 0 chr9 48532820 48532881 -75543291 + MIRc SINE MIR 37 100 -168 5 955 573 15 0 0 chr9 48533228 48533294 -75542878 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 955 306 0 0 0 chr9 48533294 48533327 -75542845 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 955 237 65 0 0 chr9 48533328 48533359 -75542813 + (TCC)n Simple_repeat Simple_repeat 1 31 0 5 955 398 222 32 6 chr9 48534769 48534867 -75541305 + PB1D9 SINE Alu 34 129 -21 5 955 1305 83 0 0 chr9 48534879 48535059 -75541113 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 955 495 0 0 0 chr9 48535394 48535449 -75540723 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 955 257 273 61 0 chr9 48539221 48539287 -75536885 - PB1D10 SINE Alu -20 97 28 6 955 210 323 9 83 chr9 48540614 48540722 -75535450 + MIRc SINE MIR 44 143 -125 6 955 229 263 0 0 chr9 48540843 48540901 -75535271 - L2b LINE L2 -3 3384 3327 6 955 205 282 26 78 chr9 48540899 48540976 -75535196 - L2c LINE L2 -16 3371 3299 6 955 225 0 0 0 chr9 48541884 48541909 -75534263 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 955 234 0 0 0 chr9 48541935 48541961 -75534211 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 955 22 0 0 0 chr9 48542303 48542325 -75533847 + AT_rich Low_complexity Low_complexity 1 22 0 6 955 324 0 0 0 chr9 48542527 48542563 -75533609 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 955 382 286 20 10 chr9 48543039 48543138 -75533034 - RSINE1 SINE B4 -57 108 9 6 955 209 259 23 23 chr9 48543578 48543665 -75532507 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 7 955 838 87 7 7 chr9 48544317 48544456 -75531716 + (GA)n Simple_repeat Simple_repeat 2 140 0 7 955 255 31 0 0 chr9 48546041 48546073 -75530099 + (T)n Simple_repeat Simple_repeat 1 32 0 7 955 602 0 27 0 chr9 48546333 48546406 -75529766 + (GGGA)n Simple_repeat Simple_repeat 1 75 0 7 955 204 118 29 0 chr9 48548155 48548189 -75527983 + (GGA)n Simple_repeat Simple_repeat 2 36 0 7 955 25 0 0 0 chr9 48548318 48548343 -75527829 + AT_rich Low_complexity Low_complexity 1 25 0 7 955 243 0 0 0 chr9 48548808 48548835 -75527337 + (A)n Simple_repeat Simple_repeat 1 27 0 7 955 567 0 0 0 chr9 48548874 48548937 -75527235 + (TAGG)n Simple_repeat Simple_repeat 1 63 0 7 955 180 77 0 0 chr9 48548943 48548969 -75527203 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 7 955 611 237 9 0 chr9 48548979 48549093 -75527079 - ID_B1 SINE B4 -5 219 105 7 955 214 273 0 0 chr9 48550062 48550106 -75526066 - MIRc SINE MIR -118 150 107 8 955 576 0 0 0 chr9 48551730 48551794 -75524378 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 955 360 0 0 0 chr9 48553491 48553531 -75522641 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 955 543 16 0 0 chr9 48553531 48553594 -75522578 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 955 799 209 7 13 chr9 48554198 48554348 -75521824 - B1_Mur3 SINE Alu 0 149 1 8 955 282 263 25 58 chr9 48556687 48556808 -75519364 - PB1D10 SINE Alu 0 117 1 8 955 926 271 25 134 chr9 48556838 48557242 -75518930 - MTE2a LTR MaLR 0 379 20 8 955 580 239 72 0 chr9 48557877 48558015 -75518157 - B1F1 SINE Alu 0 149 2 8 955 575 324 76 29 chr9 48559496 48559706 -75516466 + B4A SINE B4 2 221 -71 8 955 556 231 109 22 chr9 48559722 48559859 -75516313 + B1_Mur2 SINE Alu 1 149 0 8 955 192 152 0 0 chr9 48560369 48560402 -75515770 + A-rich Low_complexity Low_complexity 1 33 0 9 955 180 0 0 0 chr9 48561194 48561214 -75514958 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9 955 233 226 31 31 chr9 48561273 48561337 -75514835 + MT2B LTR ERVL 177 240 -361 9 955 542 167 112 17 chr9 48561281 48561397 -75514775 + B1_Mur1 SINE Alu 22 148 -1 9 955 924 142 25 4 chr9 48561400 48561673 -75514499 + GA-rich Low_complexity Low_complexity 1 278 0 9 955 272 137 20 0 chr9 48561706 48561757 -75514415 + GA-rich Low_complexity Low_complexity 1 52 0 9 955 204 318 193 0 chr9 48562194 48562282 -75513890 + L2b LINE L2 3242 3346 -29 9 955 1154 279 70 46 chr9 48562292 48562837 -75513335 - L1MB7 LINE L1 -10 6174 5617 9 955 1070 222 9 5 chr9 48563089 48563302 -75512870 - B3 SINE B2 -2 214 1 9 955 276 30 0 0 chr9 48564246 48564279 -75511893 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 955 561 42 0 0 chr9 48564279 48564350 -75511822 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 955 219 222 315 0 chr9 48564815 48564869 -75511303 + ID4_ SINE ID 5 75 -8 1 955 228 67 0 0 chr9 48564869 48564899 -75511273 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1 955 766 214 7 0 chr9 48565013 48565158 -75511014 + B1_Mur1 SINE Alu 3 148 -1 1 955 209 343 0 0 chr9 48565918 48566017 -75510155 + C-rich Low_complexity Low_complexity 3 101 0 1 955 231 304 0 42 chr9 48566637 48566709 -75509463 + ID SINE ID 10 78 -146 1 955 26 30 0 0 chr9 48566735 48566768 -75509404 + AT_rich Low_complexity Low_complexity 1 33 0 1 955 245 282 50 76 chr9 48566801 48566920 -75509252 - MIRb SINE MIR -32 236 121 1 955 626 220 142 0 chr9 48568176 48568317 -75507855 + B4A SINE B4 132 292 0 1 955 306 73 0 0 chr9 48568328 48568369 -75507803 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1 955 204 125 0 0 chr9 48568968 48569000 -75507172 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 955 420 20 0 0 chr9 48569000 48569048 -75507124 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 955 820 273 6 6 chr9 48569512 48569689 -75506483 + B3A SINE B2 3 179 -19 1 955 450 0 0 0 chr9 48569693 48569743 -75506429 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 955 525 283 8 23 chr9 48571554 48571684 -75504488 + B3A SINE B2 1 128 -70 1 955 180 0 0 0 chr9 48572259 48572279 -75503893 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 955 256 296 9 0 chr9 48572288 48572352 -75503820 - PB1D10 SINE Alu -72 77 11 1 955 229 286 76 51 chr9 48573206 48573324 -75502848 - MIRb SINE MIR -139 129 9 1 955 366 318 16 23 chr9 48574527 48574656 -75501516 - MER20B DNA MER1_type -655 128 1 1 955 716 190 148 0 chr9 48577074 48577216 -75498956 + B3 SINE B2 1 163 -53 1 955 1465 259 37 0 chr9 48577827 48578175 -75497997 - MTE2b LTR MaLR -11 368 8 1 955 212 292 0 0 chr9 48578568 48578616 -75497556 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 1 955 328 256 25 13 chr9 48578616 48578695 -75497477 - ID4 SINE ID -1 82 3 1 955 271 281 120 32 chr9 48578792 48578917 -75497255 - MER5A DNA MER1_type -30 159 24 1 955 457 151 80 23 chr9 48580114 48580202 -75495970 - B1_Mur4 SINE Alu 0 150 58 1 955 1042 111 14 7 chr9 48580203 48580348 -75495824 + B1_Mus1 SINE Alu 1 146 -2 1 955 287 206 13 40 chr9 48580361 48580437 -75495735 - B1_Mur4 SINE Alu -76 74 1 1 955 300 193 27 36 chr9 48580372 48580457 -75495715 - B4A SINE B4 -143 149 64 1 955 212 245 20 0 chr9 48582290 48582339 -75493833 + CT-rich Low_complexity Low_complexity 3 52 0 1 955 315 256 32 64 chr9 48582544 48582669 -75493503 + L1MC3 LINE L1 6526 6646 -1139 1 955 213 121 0 0 chr9 48582671 48582704 -75493468 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 955 219 69 0 0 chr9 48582755 48582784 -75493388 + (TATATG)n Simple_repeat Simple_repeat 6 34 0 1 955 533 286 8 0 chr9 48582838 48582957 -75493215 + B1F SINE Alu 1 120 -29 1 955 352 279 257 0 chr9 48583152 48583288 -75492884 + MLT1B LTR MaLR 1 171 -219 1 955 1133 68 7 33 chr9 48583425 48583577 -75492595 + B1_Mus1 SINE Alu 1 148 0 1 955 650 122 9 0 chr9 48583577 48583684 -75492488 + (GA)n Simple_repeat Simple_repeat 1 108 0 1 955 345 352 38 38 chr9 48584936 48585119 -75491053 + MIRb SINE MIR 8 190 -78 1 955 1176 62 0 0 chr9 48586667 48586813 -75489359 + B1_Mus2 SINE Alu 1 146 -1 1 955 273 342 144 0 chr9 48586937 48587048 -75489124 + MIRb SINE MIR 18 144 -124 1 955 357 331 13 27 chr9 48588232 48588381 -75487791 + B4A SINE B4 1 147 -145 1 955 370 125 20 20 chr9 48588414 48588512 -75487660 + (CAGAGA)n Simple_repeat Simple_repeat 3 100 0 1 955 554 150 19 7 chr9 48588507 48588661 -75487511 + (CA)n Simple_repeat Simple_repeat 2 157 0 1 955 483 124 26 0 chr9 48588687 48588800 -75487372 + (CA)n Simple_repeat Simple_repeat 2 117 0 1 955 238 272 159 71 chr9 48589250 48589432 -75486740 + L2b LINE L2 2939 3136 -239 1 955 1154 75 0 20 chr9 48590098 48590236 -75485936 + B1_Mus1 SINE Alu 2 139 -9 1 955 198 0 0 0 chr9 48590236 48590258 -75485914 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 955 1154 75 0 20 chr9 48590258 48590269 -75485903 + B1_Mus1 SINE Alu 140 148 0 1 955 333 0 0 0 chr9 48590337 48590374 -75485798 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 955 352 296 34 25 chr9 48591785 48591903 -75484269 + PB1D7 SINE Alu 1 119 -1 1 955 194 0 39 0 chr9 48591938 48591964 -75484208 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 955 1213 49 21 0 chr9 48591967 48592110 -75484062 - B1_Mus1 SINE Alu 0 148 3 1 955 310 245 75 0 chr9 48592240 48592334 -75483838 - B1F SINE Alu 0 149 49 1 955 580 233 61 23 chr9 48592534 48592666 -75483506 + ID_B1 SINE B4 86 222 -2 1 955 426 280 128 8 chr9 48592666 48592799 -75483373 + RSINE1 SINE B4 2 150 -15 1 955 278 326 49 58 chr9 48592799 48592871 -75483301 + B4 SINE B4 225 292 0 1 955 449 296 10 0 chr9 48594201 48594299 -75481873 + B1F SINE Alu 4 102 -47 1 955 365 0 22 0 chr9 48594305 48594350 -75481822 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 955 585 42 0 0 chr9 48594363 48594435 -75481737 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 1 955 1550 0 0 16 chr9 48594435 48594618 -75481554 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 1 955 23 33 0 0 chr9 48594705 48594735 -75481437 + AT_rich Low_complexity Low_complexity 1 30 0 1 955 215 125 25 0 chr9 48595550 48595590 -75480582 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 1 955 834 97 0 0 chr9 48596773 48596917 -75479255 + (TC)n Simple_repeat Simple_repeat 1 144 0 1 955 225 0 0 0 chr9 48596917 48596941 -75479231 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 955 1082 232 14 24 chr9 48598043 48598255 -75477917 - B3 SINE B2 -6 210 1 1 955 519 262 16 125 chr9 48598255 48598299 -75477873 - B2_Mm2 SINE B2 -24 171 129 1 955 306 0 0 0 chr9 48598299 48598333 -75477839 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 955 702 222 1 48 chr9 48598333 48598480 -75477692 - B3A SINE B2 -66 132 1 1 955 405 0 0 0 chr9 48599622 48599667 -75476505 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 955 273 313 73 37 chr9 48600963 48601099 -75475073 + B1F2 SINE Alu 1 141 -8 1 955 185 246 0 15 chr9 48601107 48601173 -75474999 + GA-rich Low_complexity Low_complexity 1 65 0 1 955 450 175 17 41 chr9 48601341 48601433 -75474739 + RSINE1 SINE B4 8 96 -196 1 955 226 26 79 0 chr9 48603715 48603753 -75472419 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1 955 690 277 44 0 chr9 48604219 48604378 -75471794 + B3A SINE B2 26 191 -7 1 955 480 77 0 0 chr9 48605312 48605377 -75470795 + (CATA)n Simple_repeat Simple_repeat 4 68 0 1 955 391 310 79 55 chr9 48605603 48605767 -75470405 - B3A SINE B2 -18 180 13 1 955 289 264 0 0 chr9 48606438 48606510 -75469662 + ID SINE ID 2 73 -151 1 955 304 276 128 99 chr9 48607646 48607787 -75468385 + B1F1 SINE Alu 5 149 0 1 955 625 212 2 4 chr9 48607867 48607996 -75468176 + B1_Mus1 SINE Alu 7 132 -17 1 955 669 262 71 27 chr9 48608000 48608184 -75467988 + ID_B1 SINE B4 33 224 0 1 955 201 39 0 0 chr9 48608286 48608312 -75467860 + (GTTTG)n Simple_repeat Simple_repeat 3 28 0 1 955 811 159 20 20 chr9 48608320 48608468 -75467704 - B1_Mus1 SINE Alu 0 148 1 1 955 378 0 0 0 chr9 48608631 48608673 -75467499 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 955 446 248 26 9 chr9 48610078 48610192 -75465980 + PB1D10 SINE Alu 2 117 0 1 955 785 180 21 28 chr9 48610221 48610364 -75465808 + B1_Mus2 SINE Alu 5 146 -1 1 955 627 95 0 0 chr9 48610367 48610472 -75465700 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 955 419 244 0 0 chr9 48610711 48610793 -75465379 + ID4_ SINE ID 2 83 0 1 955 515 248 0 26 chr9 48610912 48611028 -75465144 + PB1D10 SINE Alu 2 114 -3 1 955 1232 61 0 0 chr9 48611034 48611181 -75464991 + B1_Mus2 SINE Alu 1 147 0 1 955 1005 292 106 33 chr9 48611447 48611999 -75464173 - L1MB2 LINE L1 -3 6168 5570 1 955 286 288 129 11 chr9 48612517 48612667 -75463505 + B4 SINE B4 123 288 -4 1 955 216 86 0 0 chr9 48612668 48612703 -75463469 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 955 390 42 0 0 chr9 48612715 48612763 -75463409 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 955 191 88 0 29 chr9 48612946 48612981 -75463191 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 955 281 185 15 0 chr9 48613112 48613177 -75462995 + CT-rich Low_complexity Low_complexity 2 67 0 1 955 245 171 94 106 chr9 48613554 48613589 -75462583 + RMER17D LTR ERVK 237 266 -623 1 955 936 254 26 112 chr9 48613589 48613900 -75462272 + B4A SINE B4 5 288 -4 1 955 245 171 94 106 chr9 48613900 48613949 -75462223 + RMER17D LTR ERVK 267 320 -569 1 955 232 333 68 55 chr9 48614530 48614676 -75461496 + MER91A DNA Tip100 44 191 -5 1 955 559 191 13 0 chr9 48615425 48615577 -75460595 + (CA)n Simple_repeat Simple_repeat 2 155 0 1 955 564 206 55 28 chr9 48616553 48616698 -75459474 + B1F SINE Alu 1 149 0 1 955 223 250 17 0 chr9 48616707 48616767 -75459405 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 955 470 350 43 43 chr9 48616782 48616967 -75459205 - B4A SINE B4 -2 290 106 1 955 351 0 0 0 chr9 48617180 48617219 -75458953 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 955 208 304 50 12 chr9 48618220 48618300 -75457872 + L4 LINE RTE 458 540 -1489 1 955 563 254 27 0 chr9 48618483 48618593 -75457579 + ID_B1 SINE B4 99 211 -13 1 955 684 0 0 0 chr9 48618594 48618670 -75457502 + (GGGA)n Simple_repeat Simple_repeat 1 76 0 1 955 417 86 0 0 chr9 48619500 48619558 -75456614 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 955 859 235 72 39 chr9 48619997 48620205 -75455967 + ID_B1 SINE B4 3 217 -7 2 955 192 200 0 62 chr9 48620802 48620850 -75455322 + L2c LINE L2 3339 3383 -4 2 955 200 137 0 19 chr9 48620914 48620966 -75455206 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 2 955 924 163 0 0 chr9 48620967 48621108 -75455064 - B1_Mur1 SINE Alu -7 142 2 2 955 720 35 0 0 chr9 48622525 48622612 -75453560 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 955 1183 37 0 0 chr9 48623439 48623575 -75452597 + B1_Mm SINE Alu 1 136 -11 2 955 442 31 31 0 chr9 48623575 48623639 -75452533 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 2 955 728 143 62 31 chr9 48623934 48624064 -75452108 + B1_Mus2 SINE Alu 2 135 -12 2 955 248 0 31 0 chr9 48624070 48624102 -75452070 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 955 378 186 233 0 chr9 48624130 48624216 -75451956 - PB1D7 SINE Alu -10 110 5 2 955 919 90 52 0 chr9 48624535 48624669 -75451503 - B1_Mur3 SINE Alu 0 149 9 2 955 382 256 63 137 chr9 48624570 48624760 -75451412 - MT2B LTR ERVL -337 264 89 2 955 442 283 41 56 chr9 48624989 48625184 -75450988 + MIR3 SINE MIR 10 201 -7 2 955 205 250 0 0 chr9 48626059 48626123 -75450049 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 955 837 272 9 5 chr9 48626645 48626863 -75449309 - ID_B1 SINE B4 -1 223 5 2 955 217 100 40 0 chr9 48627269 48627319 -75448853 + (CCA)n Simple_repeat Simple_repeat 3 54 0 2 956 324 227 169 11 chr9 48628297 48628386 -75447786 + ID_B1 SINE B4 84 186 -38 2 956 805 270 130 19 chr9 48628484 48628745 -75447427 + B4 SINE B4 1 290 -2 2 956 234 0 0 0 chr9 48630205 48630231 -75445941 + (A)n Simple_repeat Simple_repeat 1 26 0 2 956 190 226 78 31 chr9 48630595 48630659 -75445513 - MIR3 SINE MIR -138 70 4 2 956 238 200 46 0 chr9 48630683 48630748 -75445424 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 2 956 324 305 0 0 chr9 48630812 48630907 -75445265 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 956 180 0 0 0 chr9 48633117 48633137 -75443035 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 956 395 314 56 50 chr9 48633291 48633452 -75442720 - MIRb SINE MIR -39 229 68 2 956 204 200 0 0 chr9 48633712 48633772 -75442400 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 956 856 191 0 0 chr9 48633982 48634118 -75442054 + B1_Mur2 SINE Alu 1 136 -13 2 956 204 40 0 0 chr9 48634125 48634150 -75442022 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2 956 265 235 61 12 chr9 48634743 48634825 -75441347 + MIRc SINE MIR 64 149 -119 2 956 873 266 143 3 chr9 48634840 48635127 -75441045 - MER46C DNA MER2_type -3 335 9 2 956 256 254 111 14 chr9 48635267 48635339 -75440833 + PB1D7 SINE Alu 1 79 -41 2 956 756 0 0 0 chr9 48635346 48635430 -75440742 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 2 956 963 245 5 42 chr9 48635431 48635644 -75440528 + ID_B1 SINE B4 16 220 -4 2 956 559 349 152 25 chr9 48635947 48636394 -75439778 + LTR86C LTR ERVL 71 574 -47 2 956 237 33 0 0 chr9 48636400 48636430 -75439742 + (TCCA)n Simple_repeat Simple_repeat 2 31 0 2 956 691 250 14 0 chr9 48637622 48637766 -75438406 + B1_Mur1 SINE Alu 2 147 -2 2 956 507 17 0 0 chr9 48637808 48637868 -75438304 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 956 726 233 0 0 chr9 48637913 48638093 -75438079 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 956 357 24 0 0 chr9 48638095 48638137 -75438035 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 956 496 322 42 83 chr9 48638141 48638358 -75437814 - B4A SINE B4 -84 208 1 2 956 231 114 0 0 chr9 48641951 48641986 -75434186 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 956 208 241 0 77 chr9 48644471 48644588 -75431584 + C-rich Low_complexity Low_complexity 2 109 0 2 956 225 0 0 0 chr9 48646777 48646802 -75429370 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2 956 307 183 60 70 chr9 48646877 48646977 -75429195 + PB1D9 SINE Alu 22 120 0 2 956 1324 81 6 0 chr9 48647333 48647505 -75428667 + B2_Mm1t SINE B2 2 174 -19 2 956 420 105 0 0 chr9 48647505 48647581 -75428591 + (CAAG)n Simple_repeat Simple_repeat 2 77 0 2 956 264 290 16 0 chr9 48647917 48647979 -75428193 + ID2 SINE ID 2 64 -19 2 956 198 0 0 0 chr9 48647984 48648006 -75428166 + (CCA)n Simple_repeat Simple_repeat 3 24 0 2 956 531 0 0 0 chr9 48648843 48648902 -75427270 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 956 1127 221 14 18 chr9 48649313 48649530 -75426642 + B3 SINE B2 1 216 0 2 956 1298 66 77 6 chr9 48650026 48650208 -75425964 - L1Md_F2 LINE L1 -10 6572 6378 2 956 231 274 37 99 chr9 48650867 48650948 -75425224 + PB1D7 SINE Alu 45 120 0 2 956 706 230 7 0 chr9 48651174 48651309 -75424863 - B1F1 SINE Alu -2 147 12 2 956 947 186 36 0 chr9 48651347 48651514 -75424658 + B3 SINE B2 3 175 -41 2 956 1017 101 0 0 chr9 48651525 48651673 -75424499 + (CATA)n Simple_repeat Simple_repeat 3 150 0 2 956 857 189 75 55 chr9 48651713 48651914 -75424258 + ID_B1 SINE B4 4 208 -16 2 956 353 284 27 18 chr9 48652491 48652602 -75423570 + PB1D10 SINE Alu 5 116 -1 2 956 602 287 14 58 chr9 48652610 48652817 -75423355 + B3A SINE B2 1 198 0 2 956 553 233 26 8 chr9 48652846 48652963 -75423209 + B1_Mur2 SINE Alu 26 144 -5 2 956 1776 158 139 3 chr9 48653173 48653510 -75422662 + ORR1C2 LTR MaLR 2 384 0 2 956 4113 236 72 78 chr9 48653510 48653766 -75422406 + ORR1C2-int LTR MaLR 1 254 -1255 2 956 267 31 0 0 chr9 48653766 48653798 -75422374 + (TAA)n Simple_repeat Simple_repeat 3 34 0 2 956 4113 236 72 78 chr9 48653798 48655058 -75421114 + ORR1C2-int LTR MaLR 255 1509 0 2 956 1812 145 152 29 chr9 48655058 48655211 -75420961 + ORR1C2 LTR MaLR 1 171 -213 2 956 456 19 0 0 chr9 48655211 48655264 -75420908 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 956 1812 145 152 29 chr9 48655264 48655452 -75420720 + ORR1C2 LTR MaLR 172 383 -1 2 956 1229 35 0 7 chr9 48655463 48655606 -75420566 - B1_Mm SINE Alu -5 142 1 2 956 26 30 0 0 chr9 48655606 48655639 -75420533 + AT_rich Low_complexity Low_complexity 1 33 0 2 956 277 298 42 114 chr9 48656506 48656699 -75419473 - MIR SINE MIR -11 251 73 2 956 895 186 141 114 chr9 48656880 48657044 -75419128 - ORR1D1 LTR MaLR -18 366 161 2 956 1463 78 0 5 chr9 48657044 48657236 -75418936 + B2_Mm2 SINE B2 1 191 -4 2 956 895 183 75 112 chr9 48657236 48657363 -75418809 - ORR1D1 LTR MaLR -214 160 26 2 956 724 270 107 0 chr9 48657436 48657632 -75418540 - B4A SINE B4 -75 217 1 2 956 567 29 0 0 chr9 48658343 48658412 -75417760 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 956 1200 203 58 58 chr9 48658424 48658701 -75417471 - B4A SINE B4 -14 278 2 2 956 241 312 116 8 chr9 48658714 48658843 -75417329 - MIR3 SINE MIR -21 187 45 2 956 957 214 134 16 chr9 48658992 48659277 -75416895 - MTE2b LTR MaLR 0 379 57 2 956 684 261 6 47 chr9 48659596 48659614 -75416558 - B3 SINE B2 -48 168 151 2 956 237 65 0 0 chr9 48659614 48659645 -75416527 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 2 956 695 250 20 7 chr9 48659645 48659795 -75416377 - B3A SINE B2 -41 157 7 2 956 1084 285 36 86 chr9 48659998 48660290 -75415882 + MTEa LTR MaLR 15 296 -83 2 956 760 178 234 6 chr9 48660290 48660465 -75415707 + B3 SINE B2 2 216 0 2 956 1084 285 36 86 chr9 48660465 48660556 -75415616 + MTEa LTR MaLR 297 379 0 2 956 220 356 50 8 chr9 48660573 48660692 -75415480 - MIRb SINE MIR -144 124 1 2 956 294 294 29 10 chr9 48661283 48661386 -75414786 + MIRc SINE MIR 7 111 -157 2 956 276 342 26 35 chr9 48661389 48661417 -75414755 + ID SINE ID 53 79 -145 2 956 297 327 34 34 chr9 48661417 48661534 -75414638 + PB1D10 SINE Alu 1 117 0 2 956 843 209 19 6 chr9 48661541 48661700 -75414472 + RSINE1 SINE B4 3 163 -2 2 956 347 200 15 0 chr9 48661752 48661817 -75414355 + ID2 SINE ID 15 80 -3 2 956 504 0 0 0 chr9 48661817 48661873 -75414299 + (TAAAA)n Simple_repeat Simple_repeat 2 57 0 2 956 501 141 0 23 chr9 48661936 48662023 -75414149 - B1F SINE Alu 0 149 65 2 956 422 230 0 44 chr9 48662024 48662115 -75414057 - B1F SINE Alu -28 121 35 2 956 476 229 57 9 chr9 48663694 48663800 -75412372 - ID_B1 SINE B4 0 224 114 2 956 387 105 0 0 chr9 48663800 48663857 -75412315 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 2 956 1159 69 7 0 chr9 48663872 48664017 -75412155 - B1_Mus2 SINE Alu 0 147 2 2 956 350 308 48 0 chr9 48664032 48664136 -75412036 - ID_B1 SINE B4 -114 110 2 2 956 808 251 60 5 chr9 48664427 48664627 -75411545 + B3 SINE B2 1 211 -5 2 956 1141 282 81 48 chr9 48665228 48665464 -75410708 - ORR1D2 LTR MaLR 0 370 148 2 956 1375 143 13 30 chr9 48665464 48665694 -75410478 + URR1A DNA MER1_type 1 226 0 2 956 1141 282 81 48 chr9 48665694 48665815 -75410357 - ORR1D2 LTR MaLR -223 147 1 2 956 283 278 0 14 chr9 48666512 48666585 -75409587 + C-rich Low_complexity Low_complexity 2 73 0 2 956 833 272 6 0 chr9 48666587 48666767 -75409405 - ID_B1 SINE B4 -15 209 29 2 956 383 281 78 52 chr9 48666809 48666963 -75409209 + MLT1A0 LTR MaLR 1 158 -207 2 956 330 273 99 33 chr9 48666972 48667063 -75409109 + PB1D10 SINE Alu 21 117 0 2 956 1159 126 20 40 chr9 48667232 48667431 -75408741 - B2_Mm2 SINE B2 0 195 1 2 956 429 36 0 0 chr9 48667447 48667502 -75408670 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 956 391 224 79 0 chr9 48667525 48667601 -75408571 + ID2 SINE ID 2 83 0 2 956 216 290 32 0 chr9 48667640 48667702 -75408470 - MIRc SINE MIR -68 200 137 2 956 342 0 0 0 chr9 48667749 48667787 -75408385 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 956 248 324 47 38 chr9 48668845 48668951 -75407221 + MER5B DNA MER1_type 3 109 -69 3 956 729 274 23 123 chr9 48669234 48669515 -75406657 + B4 SINE B4 16 270 -22 3 956 438 20 0 0 chr9 48669515 48669566 -75406606 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 956 729 274 23 123 chr9 48669566 48669592 -75406580 + B4 SINE B4 271 292 0 3 956 247 343 81 0 chr9 48670176 48670275 -75405897 + MIRb SINE MIR 106 212 -56 3 956 265 280 28 0 chr9 48670419 48670526 -75405646 + L1M2 LINE L1 5491 5600 -697 3 956 873 303 25 36 chr9 48670533 48670810 -75405362 + B4A SINE B4 1 274 -18 3 956 625 198 0 49 chr9 48670921 48671043 -75405129 + PB1D9 SINE Alu 5 120 0 3 956 595 217 198 6 chr9 48671096 48671263 -75404909 + B3 SINE B2 8 206 -10 3 956 438 254 146 0 chr9 48671536 48671666 -75404506 - B1F SINE Alu 0 149 1 3 956 262 370 72 96 chr9 48672222 48672557 -75403615 - ORR1E LTR MaLR -1 358 32 3 956 1506 59 5 0 chr9 48672897 48673083 -75403089 - B2_Mm1a SINE B2 -5 188 2 3 956 552 300 72 55 chr9 48673191 48673504 -75402668 - MTEa LTR MaLR 0 379 1 3 956 374 384 83 26 chr9 48673913 48674143 -75402029 + ORR1E LTR MaLR 1 243 -116 3 956 290 352 13 0 chr9 48675682 48675784 -75400388 - ID4_ SINE ID -49 103 1 3 956 269 289 89 0 chr9 48675806 48675896 -75400276 - B1F SINE Alu -15 134 37 3 956 287 312 0 0 chr9 48675949 48676029 -75400143 + ID4 SINE ID 3 82 -1 3 956 758 188 14 28 chr9 48676446 48676588 -75399584 + B1_Mur2 SINE Alu 1 140 -9 3 956 1055 268 87 20 chr9 48677339 48677686 -75398486 - ORR1D2 LTR MaLR 0 370 1 3 956 821 19 10 0 chr9 48678078 48678181 -75397991 + (GA)n Simple_repeat Simple_repeat 1 104 0 3 956 812 175 0 0 chr9 48678183 48678309 -75397863 + B3 SINE B2 1 126 -90 3 956 211 203 0 63 chr9 48678311 48678390 -75397782 + (TTAA)n Simple_repeat Simple_repeat 4 77 0 3 956 185 35 69 0 chr9 48678405 48678434 -75397738 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 3 956 423 98 0 0 chr9 48679280 48679341 -75396831 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 956 631 263 98 7 chr9 48679348 48679367 -75396805 - B4 SINE B4 -4 288 270 3 956 396 0 0 0 chr9 48679367 48679411 -75396761 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 956 631 263 98 7 chr9 48679411 48679544 -75396628 - B4 SINE B4 -23 269 122 3 956 304 139 56 0 chr9 48679586 48679658 -75396514 + (CACCAT)n Simple_repeat Simple_repeat 5 80 0 3 956 734 230 7 0 chr9 48679662 48679801 -75396371 - B1_Mur1 SINE Alu -8 141 2 3 956 186 330 0 69 chr9 48680231 48680332 -75395840 - L2c LINE L2 -24 3363 3270 3 956 593 269 18 55 chr9 48681460 48681625 -75394547 + B4A SINE B4 1 159 -133 3 956 297 183 0 0 chr9 48681716 48681776 -75394396 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 956 225 0 0 0 chr9 48681776 48681801 -75394371 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 956 404 227 164 0 chr9 48682658 48682768 -75393404 - ID_B1 SINE B4 -4 220 93 3 956 791 218 203 118 chr9 48682778 48683127 -75393045 - MTE2a LTR MaLR 0 379 1 3 956 449 189 44 0 chr9 48683676 48683766 -75392406 - L1MC4a LINE L1 -13 7869 7776 3 956 495 0 0 0 chr9 48683959 48684014 -75392158 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 956 22 35 0 0 chr9 48684277 48684306 -75391866 + AT_rich Low_complexity Low_complexity 1 29 0 3 956 408 231 0 126 chr9 48684308 48684384 -75391788 - PB1D9 SINE Alu -5 115 48 3 956 1636 47 0 0 chr9 48684384 48684577 -75391595 - B2_Mm1a SINE B2 0 193 1 3 956 408 252 0 134 chr9 48684577 48684636 -75391536 - PB1D9 SINE Alu -73 47 1 3 956 530 328 72 50 chr9 48684644 48684962 -75391210 + ORR1E LTR MaLR 35 359 0 3 956 525 246 24 8 chr9 48686312 48686435 -75389737 + RSINE1 SINE B4 2 126 -39 3 956 275 254 0 17 chr9 48686435 48686495 -75389677 + C-rich Low_complexity Low_complexity 4 62 0 3 956 207 88 0 0 chr9 48686520 48686554 -75389618 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 956 331 269 13 13 chr9 48686622 48686701 -75389471 + ID4 SINE ID 3 81 -2 3 956 279 266 16 0 chr9 48686743 48686807 -75389365 + L2b LINE L2 3309 3373 -2 3 956 931 255 18 22 chr9 48686982 48687207 -75388965 + ID_B1 SINE B4 1 224 0 3 956 705 208 214 0 chr9 48687349 48687527 -75388645 + B3 SINE B2 1 216 0 3 956 314 333 49 0 chr9 48687544 48687646 -75388526 - RCHARR1 DNA MER1_type -616 358 252 3 956 383 309 60 13 chr9 48687883 48688034 -75388138 - MER5A DNA MER1_type -15 174 17 3 956 982 233 5 50 chr9 48688303 48688524 -75387648 - ID_B1 SINE B4 -8 216 6 3 956 322 288 117 0 chr9 48689318 48689469 -75386703 - MIR SINE MIR -76 192 18 3 956 310 236 143 18 chr9 48689666 48689778 -75386394 + MIRc SINE MIR 25 150 -118 3 956 346 269 28 37 chr9 48689778 48689886 -75386286 + ID_B1 SINE B4 77 183 -41 3 956 541 199 17 13 chr9 48689791 48689904 -75386268 + B1F SINE Alu 11 127 -21 3 956 601 260 74 14 chr9 48689910 48690058 -75386114 + ID_B1 SINE B4 1 157 -67 3 956 318 26 0 0 chr9 48690071 48690110 -75386062 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 3 956 211 26 50 50 chr9 48690116 48690156 -75386016 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 3 956 260 296 139 80 chr9 48690847 48690890 -75385282 - MLT2B4 LTR ERVL -116 601 550 3 956 558 0 0 0 chr9 48690890 48690952 -75385220 + (GGATG)n Simple_repeat Simple_repeat 5 66 0 3 956 878 250 71 15 chr9 48690952 48691191 -75384981 - MLT2B4 LTR ERVL -104 568 339 3 956 692 237 32 13 chr9 48691205 48691363 -75384809 + MTE2a LTR MaLR 198 358 -21 3 956 1483 162 9 0 chr9 48691896 48692125 -75384047 + ORR1B1 LTR MaLR 1 231 -163 3 956 398 254 0 126 chr9 48692200 48692335 -75383837 - MLT1L LTR MaLR -344 266 149 3 956 3356 48 2 0 chr9 48692350 48692745 -75383427 - MTA_Mm LTR MaLR 0 396 1 3 956 339 25 0 0 chr9 48692856 48692896 -75383276 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3 956 789 103 103 0 chr9 48692945 48693081 -75383091 - RMER4B LTR ERVK -435 150 1 3 956 248 163 0 0 chr9 48693235 48693278 -75382894 + RMER4B LTR ERVK 338 380 -205 3 956 519 232 0 0 chr9 48693301 48693400 -75382772 + PB1D9 SINE Alu 2 100 -20 3 956 286 289 35 6 chr9 48693715 48693812 -75382360 + MIR SINE MIR 110 210 -58 3 956 486 322 131 21 chr9 48694097 48694379 -75381793 - LTR16B2 LTR ERVL 0 462 150 3 956 525 303 54 59 chr9 48694405 48694626 -75381546 - ID_B1 SINE B4 -3 221 2 3 956 385 261 57 0 chr9 48696279 48696367 -75379805 + RSINE1 SINE B4 49 141 -24 3 956 369 0 0 0 chr9 48696379 48696420 -75379752 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 3 956 1283 241 110 12 chr9 48696624 48696960 -75379212 - ORR1D2 LTR MaLR -1 369 1 3 956 405 0 0 0 chr9 48697245 48697290 -75378882 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 956 726 223 15 0 chr9 48697777 48697907 -75378265 - B1_Mur2 SINE Alu -13 136 5 3 956 1083 106 0 0 chr9 48698546 48698687 -75377485 + B1_Mus1 SINE Alu 1 141 -7 3 956 849 157 0 33 chr9 48698689 48698873 -75377299 + GA-rich Low_complexity Low_complexity 1 178 0 3 956 261 270 21 63 chr9 48699709 48699804 -75376368 - MIR SINE MIR -66 196 106 3 956 746 205 143 103 chr9 48699975 48700247 -75375925 + B4A SINE B4 1 283 -9 3 956 1242 48 0 0 chr9 48700255 48700421 -75375751 + (CA)n Simple_repeat Simple_repeat 1 166 0 3 956 4933 162 75 6 chr9 48700495 48701344 -75374828 + RMER13B LTR ERVK 1 908 0 3 956 230 50 75 0 chr9 48701359 48701399 -75374773 + RLTR47_MM LTR ERV1 1 43 -489 3 956 522 244 54 49 chr9 48701402 48701587 -75374585 - RMER5 LTR ERV1 -307 227 42 3 956 305 195 114 25 chr9 48702710 48702789 -75373383 + RLTR25B LTR ERVK 424 509 -519 3 956 891 28 0 0 chr9 48702724 48702832 -75373340 + B1_Mus2 SINE Alu 40 147 0 3 956 696 127 0 0 chr9 48702839 48702949 -75373223 + (GGA)n Simple_repeat Simple_repeat 3 112 0 3 956 213 279 16 0 chr9 48703265 48703326 -75372846 - MIR SINE MIR -92 170 109 3 956 588 248 8 8 chr9 48705197 48705331 -75370841 - B1F SINE Alu -15 134 1 3 956 1236 43 0 0 chr9 48706928 48707069 -75369103 + B1_Mm SINE Alu 1 141 -6 3 956 652 191 92 0 chr9 48708232 48708363 -75367809 - B1F2 SINE Alu -6 143 1 3 956 501 140 31 41 chr9 48708421 48708518 -75367654 + B1_Mur1 SINE Alu 41 136 -13 3 956 199 272 72 24 chr9 48709817 48709900 -75366272 + MIRc SINE MIR 107 193 -75 3 956 650 91 10 0 chr9 48710107 48710206 -75365966 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 3 956 449 262 0 45 chr9 48710263 48710375 -75365797 + B1F2 SINE Alu 2 108 -41 3 956 328 208 0 0 chr9 48710400 48710453 -75365719 + B3 SINE B2 6 58 -158 3 956 941 260 24 16 chr9 48710460 48710706 -75365466 + B4 SINE B4 31 278 -14 3 956 426 85 0 0 chr9 48710719 48710778 -75365394 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 956 1019 123 18 0 chr9 48710970 48711140 -75365032 + (GAAAA)n Simple_repeat Simple_repeat 3 175 0 3 956 441 0 0 0 chr9 48711195 48711244 -75364928 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 956 981 222 25 25 chr9 48711347 48711550 -75364622 - B3 SINE B2 -13 203 1 3 956 313 242 114 24 chr9 48712108 48712231 -75363941 - L2 LINE L2 -557 2862 2729 3 956 391 259 0 0 chr9 48712456 48712537 -75363635 + ID4 SINE ID 3 83 0 3 956 412 273 146 36 chr9 48713649 48713786 -75362386 - ID_B1 SINE B4 -70 154 3 4 956 196 306 61 53 chr9 48715111 48715242 -75360930 + L3 LINE CR1 4278 4409 -80 4 956 432 0 0 0 chr9 48715532 48715580 -75360592 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 956 337 226 64 36 chr9 48715749 48715859 -75360313 + PB1D10 SINE Alu 5 117 0 4 956 212 227 50 20 chr9 48715916 48716015 -75360157 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 4 956 651 242 25 38 chr9 48716951 48717110 -75359062 + RSINE1 SINE B4 3 159 -6 4 956 24 32 0 0 chr9 48717115 48717146 -75359026 + AT_rich Low_complexity Low_complexity 1 31 0 4 956 338 273 34 0 chr9 48717267 48717355 -75358817 + U6 snRNA snRNA 4 94 -13 4 956 446 256 0 93 chr9 48717649 48717778 -75358394 - PB1D10 SINE Alu 0 117 1 4 956 917 200 11 53 chr9 48717778 48717860 -75358312 - ID SINE ID -148 76 3 4 956 343 322 84 8 chr9 48718591 48718710 -75357462 + MIR3 SINE MIR 61 188 -20 4 956 648 223 15 23 chr9 48719702 48719835 -75356337 - ID_B1 SINE B4 -2 222 91 4 956 670 209 270 0 chr9 48719865 48720028 -75356144 + B3 SINE B2 1 207 -9 4 956 189 0 0 0 chr9 48720028 48720049 -75356123 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 4 956 692 277 32 73 chr9 48720138 48720356 -75355816 + ID_B1 SINE B4 5 213 -11 4 956 225 0 0 0 chr9 48720358 48720383 -75355789 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 956 221 325 71 12 chr9 48720416 48720500 -75355672 + PB1D7 SINE Alu 3 91 -29 4 956 429 116 0 0 chr9 48720503 48720572 -75355600 + (TCTCCC)n Simple_repeat Simple_repeat 5 73 0 4 956 331 118 0 0 chr9 48720606 48720657 -75355515 + L1_Mur1 LINE L1 698 748 -6234 4 956 2697 133 43 38 chr9 48720657 48721126 -75355046 + Lx3B LINE L1 6502 6972 -1 4 956 825 270 0 11 chr9 48721151 48721331 -75354841 - B3A SINE B2 -18 180 3 4 956 482 282 68 40 chr9 48721519 48721696 -75354476 + B2_Mm2 SINE B2 1 182 -13 4 956 392 175 8 0 chr9 48721753 48721879 -75354293 + (TG)n Simple_repeat Simple_repeat 2 128 0 4 956 712 282 28 28 chr9 48721886 48722068 -75354104 - B3A SINE B2 -16 182 1 4 956 634 288 77 14 chr9 48722432 48722640 -75353532 - ID_B1 SINE B4 0 224 4 4 956 297 277 84 0 chr9 48722663 48722683 -75353489 - PB1D10 SINE Alu 0 117 28 4 956 341 222 0 0 chr9 48722683 48722746 -75353426 - ID_B1 SINE B4 -53 171 109 4 956 596 159 25 0 chr9 48723049 48723206 -75352966 + GA-rich Low_complexity Low_complexity 2 162 0 4 956 282 333 0 13 chr9 48723423 48723502 -75352670 + ID SINE ID 3 80 -144 4 956 275 83 0 0 chr9 48723494 48723530 -75352642 - U2 snRNA snRNA -149 39 4 4 956 488 252 138 0 chr9 48723549 48723672 -75352500 + ID_B1 SINE B4 80 219 -5 4 956 254 231 9 4 chr9 48723677 48723741 -75352431 + B1F SINE Alu 49 141 -8 4 956 213 349 45 0 chr9 48723770 48723836 -75352336 + B1F2 SINE Alu 4 72 -77 4 956 1311 127 102 0 chr9 48723933 48724138 -75352034 - URR1A DNA MER1_type 0 226 1 4 956 2132 191 10 22 chr9 48725613 48726025 -75350147 + MTB_Mm LTR MaLR 1 407 0 4 956 1985 150 13 3 chr9 48726273 48726588 -75349584 + ORR1A2 LTR MaLR 2 319 -8 4 956 538 258 16 24 chr9 48726763 48726890 -75349282 - ID_B1 SINE B4 -20 204 79 4 956 688 260 155 0 chr9 48726951 48727132 -75349040 + ID_B1 SINE B4 13 221 -3 4 956 554 245 0 0 chr9 48727749 48727861 -75348311 + B1F SINE Alu 20 131 -18 4 956 294 232 58 0 chr9 48728159 48728228 -75347944 - L1M4 LINE L1 -2475 3671 3599 4 956 1662 36 0 0 chr9 48728321 48728514 -75347658 - B2_Mm1a SINE B2 0 193 1 4 956 213 94 0 0 chr9 48729546 48729578 -75346594 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 956 223 317 24 24 chr9 48729629 48729713 -75346459 + MIRc SINE MIR 89 172 -96 4 956 467 306 33 26 chr9 48729900 48730051 -75346121 - MLT1A1 LTR MaLR -256 152 1 4 956 528 185 10 33 chr9 48730146 48730257 -75345915 + RSINE1 SINE B4 1 100 -192 4 956 248 289 235 7 chr9 48730859 48730995 -75345177 + L2a LINE L2 3255 3421 -5 4 956 702 260 114 56 chr9 48731069 48731456 -75344716 - RMER21B LTR ERV1 -258 689 280 4 956 490 236 94 26 chr9 48731773 48731932 -75344240 - RMER15 LTR ERVL -15 560 366 4 956 594 264 102 81 chr9 48731978 48732262 -75343910 - RMER15-int LTR ERVL -3 4996 4707 4 956 210 306 118 24 chr9 48732275 48732402 -75343770 - L3 LINE CR1 -35 4454 4316 4 956 273 120 80 0 chr9 48732422 48732497 -75343675 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 4 956 474 212 124 0 chr9 48732514 48732627 -75343545 - B1_Mur2 SINE Alu -22 127 1 4 956 218 386 15 15 chr9 48732744 48732878 -75343294 + L2a LINE L2 3270 3403 -23 4 956 2925 161 11 37 chr9 48732884 48733420 -75342752 + RLTR11A LTR ERVK 7 528 0 4 956 446 233 41 8 chr9 48733718 48733837 -75342335 + MLT1D LTR MaLR 27 149 -356 4 956 593 270 98 119 chr9 48733837 48734165 -75342007 + ORR1E LTR MaLR 1 321 -38 4 956 588 267 23 46 chr9 48734393 48734512 -75341660 - Lx8 LINE L1 -194 7279 7159 4 956 3110 61 2 15 chr9 48734512 48734913 -75341259 + MTA_Mm LTR MaLR 1 396 0 4 956 588 267 23 46 chr9 48734913 48734966 -75341206 - Lx8 LINE L1 -315 7158 7111 4 956 239 336 57 70 chr9 48734967 48735124 -75341048 + MTEa LTR MaLR 225 379 0 4 956 637 241 200 58 chr9 48735163 48735423 -75340749 + MLT1D LTR MaLR 209 505 0 4 956 189 0 0 0 chr9 48735467 48735488 -75340684 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 956 422 258 18 59 chr9 48735566 48735688 -75340484 - PB1D10 SINE Alu -2 125 1 4 956 702 279 122 6 chr9 48735722 48735902 -75340270 - ID_B1 SINE B4 -1 223 23 4 956 273 250 28 42 chr9 48735842 48735913 -75340259 - BC1_Mm scRNA scRNA -73 79 10 4 956 527 78 0 13 chr9 48736176 48736254 -75339918 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 956 237 65 0 0 chr9 48737434 48737465 -75338707 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 956 827 393 63 35 chr9 48738002 48738492 -75337680 + MER74A LTR ERVL 8 511 -47 4 956 3357 45 0 8 chr9 48738493 48738892 -75337280 - MTA_Mm LTR MaLR 0 396 1 4 956 519 272 86 35 chr9 48738956 48739154 -75337018 - B3 SINE B2 0 216 9 4 956 260 303 225 0 chr9 48739169 48739219 -75336953 - PB1D10 SINE Alu -7 110 41 4 956 270 0 0 0 chr9 48739219 48739249 -75336923 + (TCC)n Simple_repeat Simple_repeat 3 32 0 4 956 260 303 225 0 chr9 48739249 48739287 -75336885 - PB1D10 SINE Alu -77 40 3 4 956 603 40 0 0 chr9 48739389 48739463 -75336709 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 956 269 118 0 19 chr9 48740026 48740078 -75336094 + (GGA)n Simple_repeat Simple_repeat 2 52 0 4 956 924 273 14 5 chr9 48741131 48741341 -75334831 + ID_B1 SINE B4 12 223 -1 4 956 189 0 0 0 chr9 48742340 48742361 -75333811 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 4 956 459 0 0 0 chr9 48743347 48743398 -75332774 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 956 389 271 28 9 chr9 48743599 48743707 -75332465 + PB1D10 SINE Alu 1 110 -7 4 956 473 252 9 27 chr9 48745498 48745608 -75330564 + PB1D10 SINE Alu 1 108 -9 4 956 405 0 0 0 chr9 48745610 48745655 -75330517 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 956 458 338 78 0 chr9 48745758 48745912 -75330260 - B4A SINE B4 -18 274 109 4 956 607 250 22 14 chr9 48745913 48746051 -75330121 + ID_B1 SINE B4 5 143 -81 4 956 360 64 0 0 chr9 48747097 48747144 -75329028 + (TATG)n Simple_repeat Simple_repeat 4 50 0 4 956 1014 241 124 0 chr9 48747157 48747406 -75328766 - B4 SINE B4 -12 280 1 4 956 1178 35 35 0 chr9 48748062 48748204 -75327968 + B1_Mus1 SINE Alu 2 148 0 4 956 237 22 21 62 chr9 48748204 48748252 -75327920 + (CAAAAA)n Simple_repeat Simple_repeat 6 51 0 4 956 214 295 67 67 chr9 48748331 48748451 -75327721 - L2c LINE L2 -1 3386 3267 4 956 403 211 13 13 chr9 48748575 48748652 -75327520 - ID SINE ID -141 83 7 4 956 1297 83 44 0 chr9 48748745 48748925 -75327247 - B2_Mm2 SINE B2 -6 189 2 4 956 1664 249 43 30 chr9 48748928 48749326 -75326846 + MTD LTR MaLR 5 407 -12 4 956 288 0 0 0 chr9 48750783 48750815 -75325357 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 956 187 258 83 83 chr9 48751418 48751490 -75324682 - L2b LINE L2 -76 3299 3228 4 956 269 26 26 0 chr9 48751514 48751552 -75324620 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 956 333 155 0 0 chr9 48751784 48751842 -75324330 + GA-rich Low_complexity Low_complexity 2 59 0 4 956 276 256 12 47 chr9 48751889 48751975 -75324197 + ID2 SINE ID 1 83 0 4 956 566 143 0 8 chr9 48752705 48752825 -75323347 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 4 956 251 261 14 14 chr9 48752826 48752896 -75323276 + CT-rich Low_complexity Low_complexity 2 71 0 4 956 500 234 202 0 chr9 48752899 48753023 -75323149 - ID_B1 SINE B4 -2 222 74 4 956 231 288 17 0 chr9 48754128 48754187 -75321985 - B1F2 SINE Alu -89 60 1 4 956 1004 136 227 0 chr9 48754203 48754379 -75321793 - B3 SINE B2 0 216 1 4 956 386 226 340 7 chr9 48754948 48754969 -75321203 - B3A SINE B2 -2 196 176 4 956 435 38 0 0 chr9 48754969 48755022 -75321150 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 956 386 226 340 7 chr9 48755022 48755147 -75321025 - B3A SINE B2 -23 175 1 4 956 1219 126 0 16 chr9 48756275 48756311 -75319861 - B2_Mm2 SINE B2 -4 191 158 4 956 456 19 0 0 chr9 48756311 48756364 -75319808 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 4 956 1219 126 0 16 chr9 48756364 48756520 -75319652 - B2_Mm2 SINE B2 -38 157 2 4 956 978 243 6 0 chr9 48756523 48756704 -75319468 - B3 SINE B2 -27 189 8 5 956 247 247 129 0 chr9 48756916 48757009 -75319163 + L1M4 LINE L1 5066 5170 -976 5 956 815 246 10 66 chr9 48757009 48757205 -75318967 + B3A SINE B2 14 198 0 5 956 295 195 48 0 chr9 48757212 48757275 -75318897 + B3 SINE B2 2 76 -122 5 956 315 0 0 0 chr9 48757313 48757348 -75318824 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 956 323 270 19 39 chr9 48757394 48757498 -75318674 + L1M2 LINE L1 3206 3307 -2836 5 956 277 279 225 0 chr9 48757524 48757635 -75318537 - RSINE1 SINE B4 -28 137 2 5 956 228 257 209 0 chr9 48757636 48757741 -75318431 + L1M2 LINE L1 3300 3426 -2717 5 956 414 248 51 117 chr9 48757772 48757897 -75318275 + ID_B1 SINE B4 102 221 -71 5 956 299 213 115 0 chr9 48757897 48757958 -75318214 + B3A SINE B2 1 68 -130 5 956 504 260 72 20 chr9 48757935 48758088 -75318084 - ID_B1 SINE B4 -62 162 2 5 956 267 103 0 0 chr9 48758426 48758465 -75317707 + (T)n Simple_repeat Simple_repeat 1 39 0 5 119 410 318 53 7 chr9 48758725 48758877 -75317295 - RSINE1 SINE B4 -1 164 6 5 957 237 178 0 0 chr9 48759187 48759232 -75316940 + CT-rich Low_complexity Low_complexity 3 47 0 5 957 935 117 0 21 chr9 48760146 48760286 -75315886 + B1_Mus1 SINE Alu 3 139 -9 5 957 767 135 0 8 chr9 48760286 48760420 -75315752 + (TA)n Simple_repeat Simple_repeat 2 134 0 5 957 454 308 37 8 chr9 48760454 48760588 -75315584 - ID_B1 SINE B4 -3 221 84 5 957 287 277 19 133 chr9 48760564 48760722 -75315450 + MT2B2 LTR ERVL 102 241 -343 5 957 624 226 39 11 chr9 48760638 48760775 -75315397 + ID_B1 SINE B4 85 221 -71 5 957 221 0 0 33 chr9 48760775 48760805 -75315367 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 5 957 360 287 52 92 chr9 48760805 48760840 -75315332 + B4A SINE B4 222 250 -42 5 957 836 237 53 0 chr9 48761136 48761326 -75314846 + MTD LTR MaLR 10 209 -210 5 957 410 156 349 0 chr9 48761326 48761435 -75314737 + B1_Mm SINE Alu 1 147 0 5 957 477 279 43 91 chr9 48761435 48761456 -75314716 + MTD LTR MaLR 195 214 -193 5 957 193 210 16 16 chr9 48761468 48761531 -75314641 + GA-rich Low_complexity Low_complexity 3 65 0 5 957 666 180 256 11 chr9 48761533 48761713 -75314459 + MTD LTR MaLR 196 419 0 5 957 1135 76 0 0 chr9 48761770 48761914 -75314258 + B1_Mus1 SINE Alu 1 144 -4 5 957 1088 122 0 16 chr9 48761914 48762097 -75314075 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 957 233 69 0 0 chr9 48762097 48762126 -75314046 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 5 957 411 171 0 0 chr9 48762127 48762203 -75313969 + GA-rich Low_complexity Low_complexity 4 79 0 5 957 402 198 0 111 chr9 48762203 48762311 -75313861 + MT2B LTR ERVL 169 264 -337 5 957 1044 39 0 8 chr9 48762217 48762347 -75313825 + B1_Mm SINE Alu 19 147 0 5 957 195 139 0 0 chr9 48762350 48762386 -75313786 + (A)n Simple_repeat Simple_repeat 1 36 0 5 957 664 283 11 65 chr9 48762386 48762571 -75313601 + B4 SINE B4 81 255 -37 5 957 449 296 33 52 chr9 48762571 48762724 -75313448 + RSINE1 SINE B4 16 165 0 5 957 303 28 0 0 chr9 48762725 48762761 -75313411 + (CACG)n Simple_repeat Simple_repeat 4 39 0 5 957 1278 112 5 0 chr9 48763175 48763363 -75312809 - B2_Mm2 SINE B2 -1 194 6 5 957 366 252 157 29 chr9 48763544 48763646 -75312526 - PB1D7 SINE Alu -2 118 4 5 957 833 201 139 6 chr9 48763970 48764150 -75312022 + B3 SINE B2 13 216 0 5 957 600 241 0 43 chr9 48764342 48764481 -75311691 + B1F SINE Alu 17 149 0 5 957 901 211 0 0 chr9 48764551 48764707 -75311465 + ID_B1 SINE B4 63 218 -6 5 957 217 151 38 0 chr9 48765055 48765108 -75311064 + GA-rich Low_complexity Low_complexity 1 55 0 5 957 486 286 0 26 chr9 48765170 48765285 -75310887 + PB1D7 SINE Alu 9 120 0 5 957 443 327 58 43 chr9 48765375 48765680 -75310492 + B4A SINE B4 1 281 -11 5 957 2096 192 19 49 chr9 48765852 48766284 -75309888 + MTD LTR MaLR 1 419 0 5 957 1521 64 0 5 chr9 48766660 48766848 -75309324 + B2_Mm2 SINE B2 2 188 -7 5 957 265 266 77 96 chr9 48767130 48767169 -75309003 + PB1D7 SINE Alu 1 102 -18 5 957 378 200 0 0 chr9 48767169 48767234 -75308938 + ID_B1 SINE B4 142 206 -18 5 957 219 114 0 0 chr9 48767237 48767272 -75308900 + (CAAT)n Simple_repeat Simple_repeat 4 38 0 5 957 397 284 37 35 chr9 48767653 48767881 -75308291 + MTD LTR MaLR 1 344 -75 5 957 1139 234 80 64 chr9 48767948 48768323 -75307849 + RMER2 LTR ERV1 187 567 0 5 957 683 277 107 40 chr9 48768563 48768815 -75307357 - B4A SINE B4 -5 287 19 5 957 189 0 0 0 chr9 48768815 48768836 -75307336 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 5 957 547 250 35 0 chr9 48770591 48770735 -75305437 + B1F1 SINE Alu 1 149 0 5 957 270 0 0 0 chr9 48770778 48770808 -75305364 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 957 522 0 0 0 chr9 48770808 48770865 -75305307 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 957 697 276 41 0 chr9 48771208 48771404 -75304768 + ID_B1 SINE B4 5 208 -16 5 957 226 224 0 0 chr9 48772935 48772984 -75303188 + (CAGG)n Simple_repeat Simple_repeat 4 52 0 5 957 525 267 5 166 chr9 48773691 48773884 -75302288 - RSINE1 SINE B4 -2 163 2 5 957 282 29 0 0 chr9 48774020 48774055 -75302117 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 5 957 484 297 21 21 chr9 48774067 48774208 -75301964 + ID_B1 SINE B4 84 224 0 5 957 781 206 0 42 chr9 48775028 48775170 -75301002 - B1_Mur1 SINE Alu -13 136 1 5 957 815 206 133 0 chr9 48775364 48775393 -75300779 - B3 SINE B2 -5 211 183 5 957 387 0 0 0 chr9 48775393 48775436 -75300736 + (TATG)n Simple_repeat Simple_repeat 4 46 0 5 957 815 206 133 0 chr9 48775436 48775586 -75300586 - B3 SINE B2 -34 182 9 5 957 822 131 0 0 chr9 48775666 48775811 -75300361 + (GA)n Simple_repeat Simple_repeat 1 145 0 5 957 314 212 200 0 chr9 48776516 48776601 -75299571 - PB1D7 SINE Alu -1 119 18 5 957 237 186 16 48 chr9 48776551 48776613 -75299559 - MT2B2 LTR ERVL -355 229 170 5 957 341 206 184 10 chr9 48776637 48776735 -75299437 - PB1D10 SINE Alu 0 117 3 5 957 556 217 133 47 chr9 48776735 48776812 -75299360 - ID_B1 SINE B4 -133 91 2 5 957 351 268 24 0 chr9 48776975 48777057 -75299115 + B1F SINE Alu 8 91 -58 5 957 359 277 26 43 chr9 48777056 48777173 -75298999 - MTD LTR MaLR -304 115 1 5 957 450 293 59 22 chr9 48777590 48777726 -75298446 + B1F1 SINE Alu 1 141 -8 5 957 1998 156 115 0 chr9 48777790 48777944 -75298228 + ORR1C2 LTR MaLR 6 172 -212 5 957 1068 124 0 0 chr9 48777944 48778113 -75298059 + (TCTCC)n Simple_repeat Simple_repeat 3 171 0 5 957 1998 156 115 0 chr9 48778113 48778298 -75297874 + ORR1C2 LTR MaLR 173 383 -1 5 957 544 263 179 43 chr9 48778298 48778505 -75297667 + B4A SINE B4 37 271 -21 5 957 297 0 0 0 chr9 48778534 48778567 -75297605 + (TTG)n Simple_repeat Simple_repeat 3 35 0 5 957 294 150 0 143 chr9 48778567 48778627 -75297545 - B1F SINE Alu -14 135 84 5 957 2550 131 15 15 chr9 48778632 48779036 -75297136 + MTC LTR MaLR 1 404 -17 5 957 275 291 0 44 chr9 48779045 48779135 -75297037 - B1F SINE Alu -58 91 6 5 957 4363 62 7 2 chr9 48779164 48779714 -75296458 - L1Md_F2 LINE L1 -2 6580 6028 5 957 487 265 28 77 chr9 48779962 48780105 -75296067 + B1F2 SINE Alu 1 136 -13 5 957 471 290 12 19 chr9 48780137 48780300 -75295872 + ID_B1 SINE B4 58 208 -16 5 957 193 119 23 23 chr9 48780311 48780354 -75295818 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 957 594 41 0 0 chr9 48780922 48780995 -75295177 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 5 957 326 300 11 0 chr9 48780997 48781087 -75295085 - PB1D7 SINE Alu -6 114 24 5 957 252 308 132 0 chr9 48781112 48781203 -75294969 - ID_B1 SINE B4 -19 205 103 5 957 498 342 12 0 chr9 48781268 48781429 -75294743 - RSINE1 SINE B4 0 165 3 5 957 1441 53 43 0 chr9 48781524 48781711 -75294461 + B2_Mm2 SINE B2 1 195 0 5 957 1144 70 0 0 chr9 48781711 48781853 -75294319 + B1_Mus1 SINE Alu 1 143 -5 5 957 1187 82 13 0 chr9 48781906 48782064 -75294108 + B2_Mm2 SINE B2 2 161 -34 5 957 333 0 0 0 chr9 48782064 48782101 -75294071 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 957 254 337 63 32 chr9 48782171 48782266 -75293906 + ID_B1 SINE B4 78 175 -49 5 957 485 198 21 10 chr9 48782191 48782288 -75293884 + PB1D7 SINE Alu 23 120 0 5 957 2217 185 132 48 chr9 48782412 48782566 -75293606 - RMER19B LTR ERVK -2 900 756 5 957 2922 55 0 0 chr9 48782566 48782912 -75293260 - ORR1A1 LTR MaLR 0 346 1 5 957 2217 185 132 48 chr9 48782912 48783303 -75292869 - RMER19B LTR ERVK -147 755 309 5 957 454 236 89 8 chr9 48783716 48783840 -75292332 - ID_B1 SINE B4 -54 170 37 5 957 1190 139 71 9 chr9 48783844 48784054 -75292118 - ORR1A4 LTR MaLR -8 321 99 5 957 234 0 0 0 chr9 48784518 48784544 -75291628 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 957 520 223 76 105 chr9 48784565 48784775 -75291397 - B4A SINE B4 -3 289 86 5 957 220 222 22 0 chr9 48784778 48784823 -75291349 + CT-rich Low_complexity Low_complexity 6 51 0 5 957 236 328 0 0 chr9 48784823 48784884 -75291288 - ID_B1 SINE B4 -18 206 146 5 957 228 286 41 82 chr9 48784913 48785035 -75291137 + MT2B2 LTR ERVL 134 250 -334 5 957 370 283 10 39 chr9 48784954 48785057 -75291115 + PB1D7 SINE Alu 21 120 0 5 957 456 259 0 36 chr9 48785309 48785421 -75290751 + RSINE1 SINE B4 12 119 -46 5 957 1405 85 21 0 chr9 48785426 48785615 -75290557 - B2_Mm1t SINE B2 0 193 1 6 957 219 36 0 0 chr9 48785679 48785707 -75290465 + (TAA)n Simple_repeat Simple_repeat 1 28 0 6 957 3520 18 5 0 chr9 48785735 48786129 -75290043 - MTA_Mm LTR MaLR 0 396 1 6 957 288 282 0 86 chr9 48786659 48786752 -75289420 - ID_B1 SINE B4 -34 190 106 6 957 1244 54 0 0 chr9 48786858 48787006 -75289166 + B1_Mus1 SINE Alu 1 148 0 6 957 225 0 0 0 chr9 48787168 48787193 -75288979 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 6 957 1075 93 7 0 chr9 48787209 48787348 -75288824 - B1_Mus1 SINE Alu -8 140 1 6 957 188 34 0 33 chr9 48787358 48787388 -75288784 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 6 957 1360 74 5 41 chr9 48787390 48787587 -75288585 - B2_Mm1a SINE B2 -2 191 2 6 957 237 282 25 8 chr9 48787596 48787714 -75288458 - L1M4c LINE L1 -3940 2444 2325 6 957 365 259 8 94 chr9 48787745 48787873 -75288299 - PB1D10 SINE Alu 0 117 1 6 957 747 237 11 17 chr9 48787873 48787942 -75288230 - ID SINE ID -145 79 12 6 957 237 328 0 0 chr9 48787958 48788019 -75288153 - ID SINE ID -142 82 22 6 957 482 266 14 41 chr9 48788149 48788294 -75287878 - B1F SINE Alu -7 142 2 6 957 1232 54 0 0 chr9 48788364 48788511 -75287661 - B1_Mus2 SINE Alu 0 147 1 6 957 351 0 0 0 chr9 48788523 48788562 -75287610 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 957 271 261 126 34 chr9 48789104 48789223 -75286949 - RSINE1 SINE B4 -28 137 8 6 957 375 235 29 19 chr9 48789350 48789454 -75286718 + PB1D10 SINE Alu 13 117 0 6 957 366 158 0 0 chr9 48789457 48789469 -75286703 + A-rich Low_complexity Low_complexity 1 12 0 6 957 1056 70 27 20 chr9 48789469 48789615 -75286557 + B1_Mm SINE Alu 1 147 0 6 957 366 158 0 0 chr9 48789615 48789678 -75286494 + A-rich Low_complexity Low_complexity 13 75 0 6 957 602 259 0 26 chr9 48789732 48789883 -75286289 - B1F SINE Alu -1 148 2 6 957 904 171 0 14 chr9 48789916 48790064 -75286108 - B1_Mur3 SINE Alu -3 146 1 6 957 1244 242 97 128 chr9 48790109 48790626 -75285546 - RMER15 LTR ERVL -74 501 1 6 957 6301 29 0 3 chr9 48790730 48791460 -75284712 + L1Md_F2 LINE L1 5855 6582 0 6 957 488 269 34 20 chr9 48791471 48791642 -75284530 + B3A SINE B2 1 174 -42 6 957 737 135 66 137 chr9 48791700 48791831 -75284341 - B2_Mm2 SINE B2 -8 187 58 6 957 3088 97 28 2 chr9 48791831 48792256 -75283916 - RLTR10C LTR ERVK 0 436 1 6 957 737 135 66 137 chr9 48792256 48792321 -75283851 - B2_Mm2 SINE B2 -138 57 5 6 957 289 238 138 81 chr9 48792401 48792488 -75283684 + PB1D10 SINE Alu 28 119 -8 6 957 291 267 90 49 chr9 48792501 48792623 -75283549 + B1F SINE Alu 18 144 -5 6 957 407 260 48 9 chr9 48792519 48792624 -75283548 + ID_B1 SINE B4 112 220 -4 6 957 23 0 0 0 chr9 48793446 48793469 -75282703 + GC_rich Low_complexity Low_complexity 1 23 0 6 957 209 303 34 27 chr9 48793504 48793653 -75282519 + (CGG)n Simple_repeat Simple_repeat 1 150 0 6 957 24 32 0 0 chr9 48794506 48794537 -75281635 + AT_rich Low_complexity Low_complexity 1 31 0 6 957 281 265 0 29 chr9 48794607 48794677 -75281495 - ID4 SINE ID -4 79 12 6 957 189 0 0 0 chr9 48794760 48794781 -75281391 + (T)n Simple_repeat Simple_repeat 1 21 0 6 957 247 87 20 61 chr9 48795830 48795879 -75280293 - ID4 SINE ID -22 61 15 6 957 220 250 0 37 chr9 48795960 48796014 -75280158 - B1F SINE Alu -63 86 35 6 957 189 0 0 0 chr9 48796039 48796060 -75280112 + (T)n Simple_repeat Simple_repeat 1 21 0 6 957 448 254 59 0 chr9 48796221 48796339 -75279833 - ID_B1 SINE B4 -7 217 93 6 957 354 61 0 0 chr9 48796397 48796446 -75279726 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 957 473 198 156 90 chr9 48796564 48796775 -75279397 - B4A SINE B4 -58 234 10 6 957 257 259 106 72 chr9 48796798 48797006 -75279166 - B3 SINE B2 0 216 2 6 957 452 234 70 42 chr9 48797142 48797285 -75278887 - B1_Mur2 SINE Alu -1 148 2 6 957 231 140 155 17 chr9 48797301 48797322 -75278850 - B1_Mur3 SINE Alu -2 147 127 6 957 564 15 0 0 chr9 48797322 48797387 -75278785 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 957 231 140 155 17 chr9 48797387 48797423 -75278749 - B1_Mur3 SINE Alu -23 126 83 6 957 387 233 0 75 chr9 48797436 48797529 -75278643 - PB1D10 SINE Alu -5 112 27 6 957 183 42 0 0 chr9 48797598 48797622 -75278550 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 957 1561 23 6 0 chr9 48797622 48797799 -75278373 - B2_Mm1a SINE B2 -14 179 2 6 957 642 237 44 0 chr9 48797806 48797941 -75278231 - B1_Mur1 SINE Alu -5 144 4 6 957 463 261 65 142 chr9 48797941 48798037 -75278135 - ID_B1 SINE B4 -4 219 7 6 957 534 275 21 48 chr9 48798218 48798363 -75277809 - ID_B1 SINE B4 0 224 84 6 957 368 289 39 0 chr9 48798473 48798577 -75277595 - RSINE1 SINE B4 -28 137 30 6 957 241 281 26 179 chr9 48798735 48798803 -75277369 + MER20 DNA MER1_type 8 71 -148 6 957 729 230 131 0 chr9 48798803 48798994 -75277178 - B3 SINE B2 0 216 1 6 957 241 281 26 179 chr9 48798994 48799042 -75277130 + MER20 DNA MER1_type 72 106 -113 6 957 199 135 53 26 chr9 48799349 48799387 -75276785 + MER5A DNA MER1_type 74 112 -77 6 957 818 167 219 6 chr9 48799391 48799560 -75276612 + B3 SINE B2 1 205 -11 6 957 435 219 48 48 chr9 48799564 48799689 -75276483 - B1F SINE Alu -5 144 20 6 957 244 197 127 32 chr9 48799687 48799750 -75276422 - ID4_ SINE ID -14 69 1 6 957 985 40 95 0 chr9 48800452 48800578 -75275594 + B1_Mm SINE Alu 1 138 -9 6 957 477 229 19 9 chr9 48800627 48800733 -75275439 + PB1D9 SINE Alu 1 107 -13 6 957 600 14 0 0 chr9 48800736 48800805 -75275367 + (GAGAA)n Simple_repeat Simple_repeat 4 72 0 6 957 495 266 27 27 chr9 48801103 48801250 -75274922 - RSINE1 SINE B4 -15 150 4 6 957 707 245 65 0 chr9 48801285 48801469 -75274703 - B3A SINE B2 0 198 3 6 957 216 175 32 149 chr9 48802198 48802292 -75273880 - RSINE1 SINE B4 0 165 83 6 957 588 233 187 11 chr9 48802510 48802692 -75273480 + B3 SINE B2 2 215 -1 6 957 491 258 23 46 chr9 48802724 48802854 -75273318 + RSINE1 SINE B4 3 129 -36 6 957 1454 49 54 0 chr9 48803401 48803586 -75272586 - B2_Mm2 SINE B2 0 195 1 6 957 375 259 36 27 chr9 48803722 48803833 -75272339 - RSINE1 SINE B4 -35 130 19 6 957 683 12 35 0 chr9 48803843 48803929 -75272243 + (TTTCC)n Simple_repeat Simple_repeat 5 93 0 6 957 246 62 0 0 chr9 48803937 48803969 -75272203 + (TATG)n Simple_repeat Simple_repeat 1 32 0 6 957 817 149 37 0 chr9 48803985 48804119 -75272053 - B2_Mm2 SINE B2 -56 139 1 6 957 638 169 35 78 chr9 48804268 48804409 -75271763 - B1_Mur2 SINE Alu -6 143 9 6 957 392 238 46 65 chr9 48804318 48804426 -75271746 - MT2B LTR ERVL -344 257 152 6 957 369 318 103 0 chr9 48804430 48804556 -75271616 - ID_B1 SINE B4 -5 219 81 6 957 463 220 371 7 chr9 48804561 48804712 -75271460 - B3 SINE B2 -10 206 1 6 957 322 316 148 19 chr9 48804804 48805014 -75271158 - Lx8 LINE L1 -82 7391 7155 6 957 319 224 188 94 chr9 48805021 48805149 -75271023 - B1F1 SINE Alu -6 143 4 6 957 417 292 83 7 chr9 48805596 48805741 -75270431 + Lx7 LINE L1 7145 7300 -396 6 957 201 138 0 0 chr9 48805809 48805838 -75270334 + (GGGGA)n Simple_repeat Simple_repeat 3 31 0 6 957 364 242 190 10 chr9 48806278 48806378 -75269794 - PB1D7 SINE Alu -1 119 2 6 957 959 194 84 0 chr9 48806388 48806579 -75269593 + B3 SINE B2 2 208 -8 6 957 338 0 24 0 chr9 48806775 48806817 -75269355 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 957 1511 43 38 0 chr9 48809004 48809190 -75266982 + B2_Mm1a SINE B2 1 193 0 6 957 252 0 0 0 chr9 48809866 48809894 -75266278 + (T)n Simple_repeat Simple_repeat 1 28 0 6 957 388 116 0 28 chr9 48809906 48809977 -75266195 + L1Md_F2 LINE L1 6502 6570 -12 6 957 1233 116 41 0 chr9 48809977 48810149 -75266023 - B2_Mm2 SINE B2 -14 181 3 6 957 386 205 20 117 chr9 48810475 48810646 -75265526 - B3 SINE B2 0 216 1 6 957 270 0 0 0 chr9 48810652 48810682 -75265490 + (T)n Simple_repeat Simple_repeat 1 30 0 6 957 729 291 47 9 chr9 48810682 48810897 -75265275 - B4A SINE B4 -68 224 2 6 957 268 327 93 0 chr9 48811365 48811472 -75264700 - PB1D10 SINE Alu 0 117 1 6 957 423 352 93 12 chr9 48812393 48812554 -75263618 - ID_B1 SINE B4 -49 175 2 6 957 229 159 0 64 chr9 48812849 48812896 -75263276 + B3 SINE B2 1 44 -172 6 957 1943 189 105 74 chr9 48812891 48813532 -75262640 - MTC-int LTR MaLR -513 1067 2 6 957 1861 173 101 35 chr9 48813531 48813591 -75262581 - MTC LTR MaLR 0 421 367 6 957 1898 164 72 19 chr9 48813591 48813965 -75262207 - ORR1B1 LTR MaLR 0 394 1 6 957 1861 173 101 35 chr9 48813965 48814299 -75261873 - MTC LTR MaLR -55 366 1 6 957 254 276 149 0 chr9 48814412 48814499 -75261673 - L2a LINE L2 -15 3411 3312 6 957 2082 168 44 10 chr9 48814550 48814935 -75261237 + MTC LTR MaLR 1 398 -23 6 957 230 298 136 8 chr9 48815129 48815254 -75260918 + B1F SINE Alu 1 141 -8 6 957 211 260 0 27 chr9 48815387 48815462 -75260710 + (TTTA)n Simple_repeat Simple_repeat 4 76 0 6 957 1205 62 0 0 chr9 48815462 48815608 -75260564 - B1_Mus2 SINE Alu 0 147 2 6 957 21 0 0 0 chr9 48815614 48815635 -75260537 + AT_rich Low_complexity Low_complexity 1 21 0 6 957 1152 81 37 0 chr9 48815636 48815797 -75260375 - B2_Mm2 SINE B2 -26 169 3 7 957 401 268 85 16 chr9 48815860 48815989 -75260183 - B1F SINE Alu -11 138 1 7 957 638 201 22 44 chr9 48816014 48816149 -75260023 + B1F SINE Alu 18 149 0 7 957 284 79 0 0 chr9 48816163 48816201 -75259971 - RLTR19A LTR ERVK 0 496 459 7 957 1501 165 43 3 chr9 48816205 48816497 -75259675 - RLTR19C LTR ERVK -187 528 1 7 957 344 239 44 44 chr9 48817717 48817831 -75258341 - PB1D10 SINE Alu -1 116 3 7 957 201 342 182 13 chr9 48819508 48819662 -75256510 + MIRb SINE MIR 14 193 -75 7 957 217 314 49 69 chr9 48819767 48819911 -75256261 - B1F SINE Alu 0 149 9 7 957 805 293 136 6 chr9 48820067 48820390 -75255782 - ORR1D2 LTR MaLR -1 369 5 7 957 1353 242 56 39 chr9 48820507 48820935 -75255237 - ORR1D2-int LTR MaLR -867 503 1 7 957 844 233 212 3 chr9 48820938 48821244 -75254928 - ORR1D2 LTR MaLR 0 370 1 7 957 234 0 0 0 chr9 48821294 48821320 -75254852 + (TC)n Simple_repeat Simple_repeat 1 26 0 7 957 528 146 0 0 chr9 48821322 48821411 -75254761 + (TA)n Simple_repeat Simple_repeat 2 90 0 7 957 838 156 0 29 chr9 48821412 48821551 -75254621 - MTC LTR MaLR -2 419 285 7 957 971 198 197 35 chr9 48821554 48821894 -75254278 - RMER10A LTR ERVL 0 442 48 7 957 1578 162 3 42 chr9 48821895 48822084 -75254088 - MTC LTR MaLR -143 278 100 7 957 1355 80 21 11 chr9 48822084 48822274 -75253898 - B2_Mm1t SINE B2 -1 192 1 7 957 1578 162 3 42 chr9 48822274 48822373 -75253799 - MTC LTR MaLR -322 99 2 7 957 354 305 0 56 chr9 48823963 48824088 -75252084 + PB1D7 SINE Alu 1 118 -2 7 957 394 284 89 7 chr9 48825520 48825655 -75250517 - L1M5 LINE L1 -1452 4694 4549 7 957 270 81 0 0 chr9 48825708 48825745 -75250427 + (T)n Simple_repeat Simple_repeat 1 37 0 7 957 866 46 0 0 chr9 48825745 48825853 -75250319 - B1_Mm SINE Alu 0 147 40 7 957 304 253 25 25 chr9 48826267 48826348 -75249824 + ID_B1 SINE B4 142 222 -2 7 957 352 194 212 10 chr9 48826864 48826963 -75249209 - ID_B1 SINE B4 0 224 106 7 957 542 227 46 11 chr9 48827218 48827372 -75248800 - B3 SINE B2 -8 187 27 7 957 1357 95 16 0 chr9 48827374 48827563 -75248609 - B2_Mm2 SINE B2 0 195 4 7 957 524 287 68 27 chr9 48827736 48827883 -75248289 - RSINE1 SINE B4 -12 153 1 7 957 581 229 125 27 chr9 48827972 48828156 -75248016 - B3 SINE B2 0 216 15 7 957 475 272 127 42 chr9 48828224 48828366 -75247806 - RSINE1 SINE B4 -8 157 4 7 957 910 252 9 46 chr9 48828395 48828611 -75247561 + B3 SINE B2 3 210 -6 7 957 443 253 120 0 chr9 48828813 48828870 -75247302 + B1F SINE Alu 6 69 -51 7 957 243 88 0 0 chr9 48828870 48828904 -75247268 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 957 443 254 57 16 chr9 48828904 48828979 -75247193 + B1F SINE Alu 70 148 -1 7 957 251 255 196 31 chr9 48828984 48829081 -75247091 + PB1D10 SINE Alu 5 117 0 7 957 589 257 7 33 chr9 48829753 48829906 -75246266 - B1_Mur1 SINE Alu 0 149 1 7 957 335 290 50 0 chr9 48830131 48830231 -75245941 + B3 SINE B2 59 163 -53 7 957 279 114 0 0 chr9 48830237 48830281 -75245891 + (CACG)n Simple_repeat Simple_repeat 3 46 0 7 957 564 195 309 6 chr9 48830299 48830457 -75245715 + B3 SINE B2 8 213 -3 7 957 1454 60 0 26 chr9 48830573 48830763 -75245409 + B2_Mm2 SINE B2 2 186 -9 7 957 1136 106 66 11 chr9 48830797 48830957 -75245215 + B2_Mm1t SINE B2 2 160 -33 7 957 363 23 0 0 chr9 48830957 48831001 -75245171 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 7 957 1136 106 66 11 chr9 48831001 48831022 -75245150 + B2_Mm1t SINE B2 161 192 -1 7 957 385 150 134 24 chr9 48831090 48831150 -75245022 + B2_Mm1t SINE B2 103 160 -33 7 957 383 0 21 0 chr9 48831150 48831197 -75244975 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 7 957 385 150 134 24 chr9 48831197 48831218 -75244954 + B2_Mm1t SINE B2 161 192 -1 7 957 481 236 99 30 chr9 48831318 48831449 -75244723 - B1_Mur3 SINE Alu -1 148 9 7 957 325 234 165 87 chr9 48831796 48831911 -75244261 - PB1D7 SINE Alu 0 147 24 7 957 613 188 122 23 chr9 48832700 48832831 -75243341 + B1_Mus1 SINE Alu 5 148 0 7 957 267 318 11 33 chr9 48832836 48832927 -75243245 + B3A SINE B2 1 89 -109 7 957 1204 173 18 35 chr9 48833137 48833365 -75242807 + URR1B DNA MER1_type 2 225 0 7 957 359 274 37 9 chr9 48833709 48833816 -75242356 - PB1D10 SINE Alu -3 114 5 7 957 330 250 32 64 chr9 48834549 48834643 -75241529 - PB1D7 SINE Alu -13 107 17 7 957 444 261 187 13 chr9 48835206 48835361 -75240811 + B3A SINE B2 1 182 -16 7 957 593 160 0 0 chr9 48835453 48835547 -75240625 - RMER6B LTR ERVK -14 447 354 7 957 333 117 33 0 chr9 48835544 48835604 -75240568 - RMER6B LTR ERVK -399 62 1 7 957 553 250 189 11 chr9 48836706 48836896 -75239276 + ID_B1 SINE B4 1 224 0 7 957 788 112 35 14 chr9 48837024 48837194 -75238978 - B2_Mm2 SINE B2 -5 188 14 7 957 596 263 63 26 chr9 48837637 48837828 -75238344 - B3A SINE B2 0 198 1 7 957 1979 125 69 71 chr9 48837996 48838418 -75237754 - RLTR19 LTR ERVK 0 499 79 7 957 494 278 0 8 chr9 48838480 48838607 -75237565 - B3 SINE B2 -90 126 1 7 957 669 245 6 31 chr9 48839191 48839351 -75236821 - RSINE1 SINE B4 -9 156 1 7 957 1650 36 0 0 chr9 48839420 48839613 -75236559 + B2_Mm1a SINE B2 1 193 0 7 957 738 188 0 14 chr9 48839856 48840002 -75236170 - B1_Mus1 SINE Alu -3 145 2 7 957 521 189 111 22 chr9 48840029 48840164 -75236008 - B1_Mus1 SINE Alu 0 148 2 7 957 398 100 319 26 chr9 48841794 48841907 -75234265 - B2_Mm2 SINE B2 -3 192 47 7 957 1023 121 85 0 chr9 48841954 48842119 -75234053 - B2_Mm1t SINE B2 -14 179 1 7 957 355 262 159 18 chr9 48842272 48842435 -75233737 + B3 SINE B2 2 187 -29 7 957 658 216 24 16 chr9 48842435 48842562 -75233610 + B4 SINE B4 93 220 -72 7 957 354 250 14 137 chr9 48842576 48842650 -75233522 + B1_Mur1 SINE Alu 14 88 -61 7 957 1230 61 0 0 chr9 48842650 48842797 -75233375 + B1_Mus1 SINE Alu 2 148 0 7 957 354 250 14 137 chr9 48842797 48842861 -75233311 + B1_Mur1 SINE Alu 89 135 -14 7 957 236 343 0 29 chr9 48842902 48842971 -75233201 + B4 SINE B4 226 292 0 7 957 418 296 20 27 chr9 48843316 48843462 -75232710 + B1F SINE Alu 5 149 0 7 957 465 234 27 9 chr9 48844211 48844323 -75231849 + B1_Mur2 SINE Alu 1 114 -35 7 957 779 76 227 0 chr9 48844347 48844466 -75231706 + B1_Mm SINE Alu 2 147 0 7 957 264 228 19 47 chr9 48844973 48845079 -75231093 - ID_B1 SINE B4 -31 193 91 7 957 264 301 57 8 chr9 48846856 48846980 -75229192 + MER5B DNA MER1_type 1 130 -48 7 957 186 43 0 0 chr9 48847352 48847375 -75228797 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 957 700 34 0 0 chr9 48847377 48847466 -75228706 - B1_Mus2 SINE Alu 0 147 59 7 957 309 169 0 0 chr9 48847801 48847824 -75228348 + A-rich Low_complexity Low_complexity 1 23 0 7 957 1200 48 7 0 chr9 48847824 48847970 -75228202 + B1_Mm SINE Alu 1 147 0 7 957 309 169 0 0 chr9 48847970 48848017 -75228155 + A-rich Low_complexity Low_complexity 24 70 0 7 957 252 0 0 0 chr9 48848037 48848065 -75228107 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 957 590 216 9 0 chr9 48848170 48848281 -75227891 - B1_Mur1 SINE Alu -37 112 1 7 957 1419 232 57 47 chr9 48848511 48848958 -75227214 - RCHARR1 DNA MER1_type -131 843 389 7 957 1047 84 0 0 chr9 48848958 48849101 -75227071 + B1_Mus1 SINE Alu 1 143 -5 7 957 1419 232 57 47 chr9 48849101 48849164 -75227008 - RCHARR1 DNA MER1_type -586 388 328 7 957 322 251 187 12 chr9 48850760 48850900 -75225272 - B3A SINE B2 0 198 38 7 957 502 164 142 33 chr9 48850900 48851020 -75225152 + URR1B DNA MER1_type 1 133 -92 7 957 1043 49 7 14 chr9 48851051 48851197 -75224975 - MT2C_Mm LTR ERVL 0 475 331 7 957 268 134 42 0 chr9 48851193 48851261 -75224911 + B1_Mur4 SINE Alu 45 145 -5 7 957 496 253 48 24 chr9 48851579 48851745 -75224427 + ID_B1 SINE B4 19 188 -36 7 957 24 0 0 0 chr9 48851774 48851798 -75224374 + AT_rich Low_complexity Low_complexity 1 24 0 7 957 1390 81 0 26 chr9 48851903 48852094 -75224078 + B2_Mm2 SINE B2 2 187 -8 7 957 809 70 70 0 chr9 48852146 48852274 -75223898 + B2_Mm2 SINE B2 57 193 -2 7 957 317 202 130 33 chr9 48853667 48853759 -75222413 - PB1D9 SINE Alu -13 107 7 7 957 487 313 15 0 chr9 48853835 48853969 -75222203 - RSINE1 SINE B4 -26 139 4 7 957 269 270 67 13 chr9 48854028 48854103 -75222069 - ID4 SINE ID -3 80 2 7 957 400 216 175 0 chr9 48854197 48854294 -75221878 - PB1D10 SINE Alu 0 117 4 7 957 1165 75 0 0 chr9 48854844 48854990 -75221182 - B1_Mus1 SINE Alu 0 148 3 7 957 995 44 70 42 chr9 48855019 48855162 -75221010 + B1_Mus1 SINE Alu 2 148 0 7 957 185 83 0 27 chr9 48855162 48855199 -75220973 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 7 957 358 269 0 13 chr9 48855275 48855354 -75220818 - PB1D7 SINE Alu -30 90 13 7 957 297 304 74 0 chr9 48855381 48855482 -75220690 - PB1D10 SINE Alu -10 110 1 7 957 443 238 0 0 chr9 48856772 48856873 -75219299 + RSINE1 SINE B4 2 102 -63 7 957 833 235 0 21 chr9 48857059 48857250 -75218922 + B3 SINE B2 3 189 -27 7 957 582 232 141 16 chr9 48857267 48857451 -75218721 + ID_B1 SINE B4 1 207 -17 7 957 537 229 188 0 chr9 48857506 48857676 -75218496 - B3 SINE B2 -12 204 3 7 957 936 216 16 16 chr9 48857857 48858050 -75218122 + B3 SINE B2 2 194 -22 7 957 1705 163 39 30 chr9 48858124 48858459 -75217713 + RMER19B LTR ERVK 339 676 -226 7 957 1445 98 40 0 chr9 48858648 48858872 -75217300 + RMER19B LTR ERVK 658 890 -12 7 957 289 286 0 13 chr9 48860059 48860137 -75216035 - B4A SINE B4 -2 290 214 8 957 659 195 0 25 chr9 48860176 48860249 -75215923 + L1_Mur3 LINE L1 5205 5274 -606 8 957 1282 83 60 11 chr9 48860249 48860432 -75215740 + B2_Mm1t SINE B2 2 193 0 8 957 659 195 0 25 chr9 48860432 48860521 -75215651 + L1_Mur3 LINE L1 5275 5363 -517 8 957 804 151 22 0 chr9 48860525 48860664 -75215508 + B1_Mur4 SINE Alu 9 150 0 8 957 286 167 0 0 chr9 48860683 48860737 -75215435 + L1_Mur3 LINE L1 5350 5403 -474 8 957 410 189 35 86 chr9 48860741 48860857 -75215315 - B1_Mur1 SINE Alu 0 149 40 8 957 756 260 40 0 chr9 48860862 48861039 -75215133 - B3 SINE B2 -31 185 2 8 957 459 41 13 26 chr9 48861728 48861804 -75214368 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 957 538 203 57 57 chr9 48861809 48861950 -75214222 - B1_Mur1 SINE Alu -7 142 2 8 957 618 259 96 45 chr9 48862047 48862245 -75213927 - B3 SINE B2 -1 215 8 8 957 373 287 37 0 chr9 48862745 48862853 -75213319 + PB1D7 SINE Alu 1 112 -8 8 957 541 259 7 35 chr9 48862960 48863104 -75213068 + B3 SINE B2 10 149 -67 8 957 185 94 0 30 chr9 48864469 48864502 -75211670 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 8 957 726 179 7 33 chr9 48864509 48864659 -75211513 - B1_Mur3 SINE Alu 0 149 4 8 957 321 26 0 0 chr9 48864890 48864928 -75211244 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 957 21 0 0 0 chr9 48865181 48865202 -75210970 + AT_rich Low_complexity Low_complexity 1 21 0 8 957 732 210 6 30 chr9 48865204 48865371 -75210801 - RSINE1 SINE B4 0 165 3 8 957 1757 5 0 0 chr9 48866134 48866324 -75209848 - B2_Mm1a SINE B2 -2 191 2 8 957 1373 88 16 0 chr9 48866330 48866512 -75209660 - B2_Mm2 SINE B2 -6 189 5 8 957 22 35 0 0 chr9 48866521 48866550 -75209622 + AT_rich Low_complexity Low_complexity 1 29 0 8 957 250 305 32 56 chr9 48866609 48866734 -75209438 - B1F SINE Alu -16 133 12 8 957 325 238 120 28 chr9 48867056 48867164 -75209008 - MER20 DNA MER1_type -62 157 40 8 957 3118 50 0 0 chr9 48867421 48867802 -75208370 + L1Md_F2 LINE L1 6202 6582 0 8 957 419 204 102 0 chr9 48868207 48868305 -75207867 + B1_Mur1 SINE Alu 42 149 0 8 957 333 0 0 0 chr9 48868814 48868851 -75207321 + (GGA)n Simple_repeat Simple_repeat 2 38 0 8 957 21 0 0 0 chr9 48869894 48869915 -75206257 + AT_rich Low_complexity Low_complexity 1 21 0 8 957 1173 55 0 7 chr9 48869915 48870063 -75206109 - B1_Mm SINE Alu 0 147 1 8 957 189 0 0 0 chr9 48870589 48870610 -75205562 + (T)n Simple_repeat Simple_repeat 1 21 0 8 957 1086 86 7 0 chr9 48870646 48870786 -75205386 + B1_Mus2 SINE Alu 1 141 -6 8 957 222 37 0 0 chr9 48870788 48870815 -75205357 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 957 1360 116 0 5 chr9 48870832 48871023 -75205149 + B2_Mm2 SINE B2 2 191 -4 8 957 816 99 70 14 chr9 48871151 48871294 -75204878 - B2_Mm2 SINE B2 0 195 45 8 957 701 301 62 10 chr9 48871342 48871537 -75204635 - B3 SINE B2 -10 206 2 8 957 672 250 102 5 chr9 48871616 48871813 -75204359 - B3 SINE B2 0 216 1 8 957 671 119 106 45 chr9 48871846 48871978 -75204194 - B1_Mur4 SINE Alu 0 150 11 8 957 971 120 21 0 chr9 48872786 48872928 -75203244 + B1_Mur4 SINE Alu 1 145 -5 8 957 222 161 169 46 chr9 48873277 48873342 -75202830 - B1F1 SINE Alu 0 149 77 8 957 490 244 0 1 chr9 48873480 48873595 -75202577 + PB1D7 SINE Alu 9 122 -27 8 957 976 134 7 0 chr9 48873839 48873981 -75202191 - B1_Mus1 SINE Alu -5 143 1 8 957 391 263 74 25 chr9 48873998 48874119 -75202053 - RSINE1 SINE B4 -35 130 4 8 957 225 0 0 0 chr9 48875006 48875031 -75201141 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 8 957 881 188 7 0 chr9 48875076 48875225 -75200947 + B1_Mur4 SINE Alu 1 150 0 8 957 31 26 0 0 chr9 48875491 48875529 -75200643 + AT_rich Low_complexity Low_complexity 1 38 0 8 957 1021 218 20 20 chr9 48875530 48875731 -75200441 - B3 SINE B2 -14 202 2 8 957 2777 176 98 26 chr9 48875787 48876357 -75199815 - RMER19C LTR ERVK 0 611 1 8 957 282 308 85 37 chr9 48876434 48876623 -75199549 + MER2 DNA MER2_type 31 228 -117 8 957 919 77 15 0 chr9 48877092 48877222 -75198950 + B1_Mus1 SINE Alu 17 148 0 8 957 291 54 0 0 chr9 48877222 48877259 -75198913 + (A)n Simple_repeat Simple_repeat 1 37 0 8 957 701 177 0 0 chr9 48877266 48877390 -75198782 + B2_Mm2 SINE B2 1 124 -71 8 957 186 71 0 0 chr9 48877419 48877447 -75198725 + (TA)n Simple_repeat Simple_repeat 1 28 0 8 957 416 238 68 0 chr9 48877980 48878097 -75198075 + B1F SINE Alu 1 124 -25 8 957 472 227 32 40 chr9 48878859 48878983 -75197189 - RSINE1 SINE B4 0 165 43 8 957 183 42 0 0 chr9 48879151 48879175 -75196997 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 957 852 155 49 18 chr9 48880030 48880194 -75195978 - ORR1C1 LTR MaLR -1 377 209 8 957 234 369 38 6 chr9 48880316 48880474 -75195698 - MER5B DNA MER1_type 0 178 16 8 957 1593 42 11 0 chr9 48880529 48880720 -75195452 - B2_Mm1t SINE B2 0 193 1 8 957 585 260 57 31 chr9 48880943 48881102 -75195070 - B3A SINE B2 -35 163 1 8 957 8605 82 44 21 chr9 48883223 48884880 -75191292 - Lx3A LINE L1 -8 6973 5270 8 957 258 56 0 0 chr9 48885852 48885888 -75190284 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 957 1141 154 10 38 chr9 48885916 48886125 -75190047 - B3 SINE B2 -7 209 7 8 957 249 159 0 0 chr9 48886929 48886973 -75189199 + T-rich Low_complexity Low_complexity 1 44 0 8 957 1176 99 77 11 chr9 48887475 48887658 -75188514 - B2_Mm2 SINE B2 0 195 1 8 957 222 292 134 10 chr9 48887733 48887830 -75188342 - PB1D10 SINE Alu -5 112 4 8 957 662 254 98 74 chr9 48888092 48888377 -75187795 - B4A SINE B4 0 292 1 8 957 914 154 20 76 chr9 48888409 48888606 -75187566 - B2_Mm2 SINE B2 -9 186 1 8 958 201 39 0 0 chr9 48890113 48890139 -75186033 + (T)n Simple_repeat Simple_repeat 1 26 0 8 958 204 67 0 0 chr9 48890405 48890435 -75185737 + (A)n Simple_repeat Simple_repeat 1 30 0 8 958 301 366 30 0 chr9 48891180 48891281 -75184891 - L1MC5 LINE L1 -76 7885 7782 8 958 1147 121 29 0 chr9 48891531 48891705 -75184467 + B2_Mm1t SINE B2 1 179 -14 8 958 310 110 373 18 chr9 48891756 48891866 -75184306 + B2_Mm2 SINE B2 47 195 0 8 958 984 115 13 13 chr9 48892291 48892441 -75183731 + B1_Mur4 SINE Alu 1 150 0 8 958 337 182 261 0 chr9 48892485 48892573 -75183599 - PB1D9 SINE Alu -8 112 2 8 958 549 312 35 86 chr9 48892679 48892994 -75183178 - L3 LINE CR1 -1451 3038 2740 8 958 477 269 8 25 chr9 48893211 48893329 -75182843 - PB1D10 SINE Alu -1 116 1 8 958 552 15 15 0 chr9 48893329 48893397 -75182775 + B1_Mm SINE Alu 79 147 0 8 958 246 56 0 0 chr9 48893402 48893426 -75182746 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 958 1227 49 0 0 chr9 48893426 48893570 -75182602 + B1_Mus1 SINE Alu 1 144 -4 8 958 414 0 0 0 chr9 48893570 48893616 -75182556 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 958 246 56 0 0 chr9 48893616 48893626 -75182546 + (CAAAA)n Simple_repeat Simple_repeat 1 10 0 8 958 298 361 84 6 chr9 48894156 48894323 -75181849 - MIRb SINE MIR -64 204 25 8 958 530 170 37 28 chr9 48894453 48894562 -75181610 + PB1D9 SINE Alu 1 110 -10 8 958 450 0 0 0 chr9 48894562 48894612 -75181560 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 958 1547 119 166 0 chr9 48894632 48894910 -75181262 - BGLII_B LTR ERVK 0 441 118 8 958 365 302 108 8 chr9 48894910 48895030 -75181142 - MLT1B LTR MaLR -72 318 187 8 958 455 179 35 23 chr9 48895019 48895105 -75181067 - PB1D9 SINE Alu -21 99 13 8 958 1227 61 0 0 chr9 48895106 48895253 -75180919 + B1_Mm SINE Alu 1 147 0 8 958 264 59 0 0 chr9 48895269 48895303 -75180869 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 8 958 328 161 97 0 chr9 48895352 48895414 -75180758 - MLT1B LTR MaLR -359 108 41 8 958 346 297 55 31 chr9 48896059 48896222 -75179950 + MIRc SINE MIR 14 180 -88 8 958 230 0 33 0 chr9 48896233 48896263 -75179909 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 958 674 246 96 83 chr9 48896269 48896510 -75179662 - B4 SINE B4 -2 290 48 8 958 369 0 0 0 chr9 48896639 48896680 -75179492 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 958 312 229 176 24 chr9 48898018 48898103 -75178069 + MTEa LTR MaLR 1 98 -281 8 958 21 0 0 0 chr9 48898103 48898124 -75178048 + AT_rich Low_complexity Low_complexity 1 21 0 8 958 700 211 233 6 chr9 48898124 48898300 -75177872 - B3 SINE B2 0 216 1 8 958 1393 67 6 11 chr9 48899239 48899421 -75176751 - B2_Mm2 SINE B2 -14 181 1 8 958 214 256 0 0 chr9 48899751 48899794 -75176378 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 958 510 255 56 44 chr9 48899796 48899956 -75176216 - RSINE1 SINE B4 0 165 4 8 958 4301 75 5 5 chr9 48901242 48901818 -75174354 - L1_Mus3 LINE L1 -1 6637 6062 8 958 198 0 0 0 chr9 48902932 48902954 -75173218 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 958 713 262 405 0 chr9 48902997 48903197 -75172975 - B4A SINE B4 -10 282 2 8 958 296 326 35 21 chr9 48903197 48903340 -75172832 + MLT1I LTR MaLR 252 396 -15 8 958 347 280 0 13 chr9 48903460 48903536 -75172636 - ID4 SINE ID -2 81 7 9 958 528 210 56 35 chr9 48903542 48903685 -75172487 - B1F SINE Alu 0 149 4 9 958 419 228 0 61 chr9 48903691 48903789 -75172383 + RSINE1 SINE B4 12 103 -62 9 958 366 107 0 0 chr9 48903790 48903846 -75172326 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 958 211 123 30 30 chr9 48903857 48903924 -75172248 + (CAGAGA)n Simple_repeat Simple_repeat 4 70 0 9 958 196 257 136 45 chr9 48904064 48904174 -75171998 - MER5A DNA MER1_type -27 162 43 9 958 348 24 0 0 chr9 48904664 48904705 -75171467 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 958 1145 82 0 0 chr9 48904782 48904928 -75171244 + B1_Mm SINE Alu 2 147 0 9 958 1031 183 98 10 chr9 48904941 48905134 -75171038 - B3 SINE B2 -5 211 2 9 958 1092 52 0 0 chr9 48905276 48905410 -75170762 - B2_Mm2 SINE B2 -60 135 2 9 958 431 269 39 0 chr9 48905424 48905528 -75170644 + PB1D9 SINE Alu 3 110 -10 9 958 684 135 0 0 chr9 48905748 48905859 -75170313 + (GGA)n Simple_repeat Simple_repeat 3 113 0 9 958 811 162 88 7 chr9 48906013 48906150 -75170022 - B1_Mur3 SINE Alu 0 149 2 9 958 264 255 55 36 chr9 48906168 48906278 -75169894 - Lx8 LINE L1 -10 7463 7352 9 958 1866 195 41 3 chr9 48906297 48906642 -75169530 - RMER6D LTR ERVK 0 720 363 9 958 1279 126 0 10 chr9 48906682 48906875 -75169297 - B2_Mm2 SINE B2 -1 194 4 9 958 1861 172 14 41 chr9 48906876 48907306 -75168866 - ORR1B2 LTR MaLR -1 383 1 9 958 301 254 181 8 chr9 48907312 48907439 -75168733 - L1M4 LINE L1 -5485 1057 909 9 958 1168 295 114 39 chr9 48907471 48908165 -75168007 - L1M4 LINE L1 -5796 746 1 9 958 261 237 0 63 chr9 48908769 48908832 -75167340 + B1_Mus2 SINE Alu 1 59 -88 9 958 193 7 6 154 chr9 48908835 48909017 -75167155 + GA-rich Low_complexity Low_complexity 23 177 0 9 958 311 145 0 68 chr9 48909017 48909091 -75167081 + (CAGAGA)n Simple_repeat Simple_repeat 1 69 0 9 958 276 263 160 50 chr9 48909095 48909195 -75166977 + B1_Mur1 SINE Alu 39 149 0 9 958 744 227 22 70 chr9 48909348 48909533 -75166639 + B3A SINE B2 15 190 -26 9 958 284 322 46 0 chr9 48910016 48910103 -75166069 - MIRb SINE MIR -52 216 126 9 958 218 253 0 13 chr9 48911348 48911424 -75164748 + CT-rich Low_complexity Low_complexity 3 77 0 9 958 312 281 61 30 chr9 48911426 48911442 -75164730 - B4A SINE B4 -48 244 231 9 958 1158 122 0 0 chr9 48911442 48911622 -75164550 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 958 324 268 61 0 chr9 48911622 48911704 -75164468 - B4 SINE B4 -63 229 143 9 958 1170 76 0 0 chr9 48911830 48911988 -75164184 + (TTTCC)n Simple_repeat Simple_repeat 3 160 0 9 958 1070 157 21 16 chr9 48912009 48912203 -75163969 - B2_Mm2 SINE B2 0 195 1 9 958 180 182 0 0 chr9 48912219 48912263 -75163909 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 9 958 686 157 0 0 chr9 48912265 48912373 -75163799 - B1_Mus2 SINE Alu 0 147 40 9 958 251 271 14 28 chr9 48912314 48912386 -75163786 - RLTR25B LTR ERVK -530 498 428 9 958 224 247 123 0 chr9 48912441 48912522 -75163650 - B1F SINE Alu -58 91 1 9 958 189 188 28 28 chr9 48912691 48912762 -75163410 + CT-rich Low_complexity Low_complexity 1 71 0 9 958 180 111 0 0 chr9 48913815 48913842 -75162330 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 958 193 254 69 69 chr9 48913942 48914014 -75162158 + MIRb SINE MIR 2 73 -195 9 958 258 361 113 16 chr9 48915772 48915958 -75160214 + MIRb SINE MIR 15 218 -50 9 958 294 269 75 9 chr9 48915969 48916089 -75160083 - MLT1B LTR MaLR 0 467 263 9 958 779 265 59 5 chr9 48916221 48916407 -75159765 - ID_B1 SINE B4 -17 207 12 9 958 303 240 0 39 chr9 48916411 48916489 -75159683 - MLT1B LTR MaLR -264 126 52 9 958 245 98 24 0 chr9 48916489 48916530 -75159642 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 9 958 22 0 0 0 chr9 48916570 48916592 -75159580 + AT_rich Low_complexity Low_complexity 1 22 0 9 958 261 0 0 0 chr9 48916739 48916768 -75159404 + (T)n Simple_repeat Simple_repeat 1 29 0 9 958 485 308 51 13 chr9 48916772 48916930 -75159242 - RSINE1 SINE B4 0 165 2 9 958 566 216 142 15 chr9 48917726 48917923 -75158249 + ID_B1 SINE B4 3 224 0 9 958 315 0 0 0 chr9 48917950 48917985 -75158187 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 958 702 310 53 69 chr9 48918070 48918430 -75157742 - ORR1E LTR MaLR -2 357 4 9 958 307 292 0 77 chr9 48918436 48918540 -75157632 - MIRb SINE MIR -121 147 52 9 958 480 260 94 0 chr9 48919344 48919471 -75156701 + ID_B1 SINE B4 85 223 -1 9 958 227 286 0 0 chr9 48920662 48920718 -75155454 + (TATG)n Simple_repeat Simple_repeat 1 56 0 9 958 734 305 30 44 chr9 48920722 48921017 -75155155 - B4A SINE B4 0 292 2 9 958 239 306 82 0 chr9 48922178 48922263 -75153909 - MER113 DNA MER1_type -426 95 4 9 958 403 339 106 66 chr9 48924265 48924521 -75151651 + B4 SINE B4 21 286 -6 9 958 790 289 35 0 chr9 48924786 48924983 -75151189 + ID_B1 SINE B4 7 210 -14 9 958 562 303 58 0 chr9 48925847 48926002 -75150170 - MTEa LTR MaLR -214 165 2 9 958 298 333 43 67 chr9 48926942 48927106 -75149066 - MIRb SINE MIR -83 185 26 9 958 571 288 21 7 chr9 48927226 48927366 -75148806 + RSINE1 SINE B4 2 143 -22 9 958 234 0 0 0 chr9 48927397 48927423 -75148749 + (TGG)n Simple_repeat Simple_repeat 1 26 0 9 958 318 301 41 0 chr9 48927429 48927502 -75148670 - B3A SINE B2 -50 148 73 9 958 952 277 50 42 chr9 48927496 48927756 -75148416 + B4A SINE B4 21 282 -10 9 958 504 0 0 0 chr9 48927777 48927833 -75148339 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 958 216 0 0 0 chr9 48929132 48929156 -75147016 + (T)n Simple_repeat Simple_repeat 1 24 0 9 958 523 232 0 18 chr9 48930399 48930513 -75145659 - PB1D10 SINE Alu -5 112 1 9 958 826 90 0 58 chr9 48930687 48930876 -75145296 + (TCC)n Simple_repeat Simple_repeat 3 180 0 9 958 1030 207 59 0 chr9 48930997 48931200 -75144972 + B3 SINE B2 2 216 0 9 958 296 316 83 62 chr9 48931286 48931431 -75144741 - Zaphod DNA Tip100 -12 4019 3872 9 958 181 316 18 0 chr9 48932555 48932612 -75143560 + MIRc SINE MIR 136 193 -75 9 958 280 263 93 21 chr9 48932621 48932718 -75143454 - MLT1A1 LTR MaLR -12 396 293 9 958 558 290 25 76 chr9 48932722 48932920 -75143252 - ID_B1 SINE B4 0 224 37 9 958 951 269 126 56 chr9 48933487 48933933 -75142239 + Lx8 LINE L1 6923 7399 -74 9 958 279 0 0 0 chr9 48934338 48934369 -75141803 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 958 516 32 0 0 chr9 48934683 48934745 -75141427 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 9 958 213 39 0 0 chr9 48934968 48934994 -75141178 + (AGCTG)n Simple_repeat Simple_repeat 1 26 0 9 958 296 290 158 21 chr9 48935523 48935618 -75140554 + PB1D10 SINE Alu 8 115 -2 9 958 286 275 62 35 chr9 48936098 48936211 -75139961 - MTEa LTR MaLR -8 371 256 9 958 421 298 96 32 chr9 48936285 48936441 -75139731 - MIR SINE MIR -96 166 1 9 958 405 0 0 0 chr9 48936679 48936724 -75139448 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 958 244 342 87 9 chr9 48936739 48936854 -75139318 + LTR89 LTR ERVL? 694 817 -62 9 958 278 349 103 15 chr9 48937829 48938024 -75138148 - MIRb SINE MIR -7 261 50 9 958 962 249 20 121 chr9 48938194 48938541 -75137631 + RMER15 LTR ERVL 29 340 -235 9 958 214 342 52 13 chr9 48938620 48938697 -75137475 + MIRc SINE MIR 90 169 -99 9 958 308 152 0 0 chr9 48939675 48939721 -75136451 - RSINE1 SINE B4 -109 56 11 9 958 887 291 75 11 chr9 48939897 48940178 -75135994 + MER2 DNA MER2_type 47 345 0 9 958 342 266 25 12 chr9 48940178 48940255 -75135917 + MER74A LTR ERVL 28 105 -453 9 958 357 256 16 146 chr9 48940320 48940512 -75135660 + MLT1A LTR MaLR 1 167 -207 9 958 248 77 26 0 chr9 48940806 48940845 -75135327 + (GGA)n Simple_repeat Simple_repeat 3 42 0 9 958 256 226 25 57 chr9 48940859 48940981 -75135191 + Lx8 LINE L1 7354 7471 -2 9 958 565 326 117 19 chr9 48941601 48941961 -75134211 + L1M4c LINE L1 391 785 -6119 9 958 604 320 214 30 chr9 48941978 48942409 -75133763 + L1M4c LINE L1 1865 2364 -4644 9 958 725 269 38 14 chr9 48943006 48943217 -75132955 - MLT1F LTR MaLR -122 426 211 9 958 33437 65 1 11 chr9 48943217 48948485 -75127687 + L1Md_F2 LINE L1 371 5586 -297 9 958 8634 29 0 2 chr9 48948485 48949478 -75126694 + L1Md_F2 LINE L1 5587 6577 -5 9 958 842 17 0 33 chr9 48951388 48951508 -75124664 + (TCCC)n Simple_repeat Simple_repeat 4 119 0 9 958 315 142 0 39 chr9 48951557 48951624 -75124548 - B2_Mm2 SINE B2 -107 109 47 9 958 1325 90 11 0 chr9 48951710 48951887 -75124285 - B2_Mm1t SINE B2 -14 179 1 9 958 582 28 0 0 chr9 48952899 48952971 -75123201 + (CA)n Simple_repeat Simple_repeat 2 73 0 9 958 217 229 0 0 chr9 48953255 48953303 -75122869 + B3A SINE B2 66 113 -85 9 958 2350 155 5 35 chr9 48953303 48953705 -75122467 + RMER1B Other Other 666 1055 -11 9 958 190 320 15 66 chr9 48954622 48954759 -75121413 - MIRb SINE MIR -15 253 124 9 958 3486 30 2 0 chr9 48955597 48955992 -75120180 - MTA_Mm LTR MaLR 0 396 1 9 958 216 302 0 0 chr9 48956555 48956608 -75119564 + (CCCA)n Simple_repeat Simple_repeat 4 56 0 9 958 622 144 70 77 chr9 48957032 48957175 -75118997 + RMER19B LTR ERVK 1 142 -760 9 958 914 215 0 0 chr9 48957150 48957322 -75118850 + RMER19B LTR ERVK 56 227 -675 9 958 2301 149 103 22 chr9 48957335 48957842 -75118330 + RMER19B LTR ERVK 349 896 -6 9 958 269 333 39 31 chr9 48958488 48958618 -75117554 + LTR33A LTR ERVL 85 215 -305 9 958 471 299 77 6 chr9 48959784 48959952 -75116220 + B3A SINE B2 2 181 -17 1 958 643 181 0 45 chr9 48959963 48960229 -75115943 + (CA)n Simple_repeat Simple_repeat 1 254 0 1 958 446 233 0 27 chr9 48960269 48960454 -75115718 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 958 22 35 0 0 chr9 48961184 48961213 -75114959 + AT_rich Low_complexity Low_complexity 1 29 0 1 958 345 93 0 0 chr9 48961664 48961718 -75114454 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 958 797 56 9 0 chr9 48962193 48962300 -75113872 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 958 515 295 99 46 chr9 48962318 48962581 -75113591 - B4A SINE B4 -11 281 5 1 958 656 278 53 10 chr9 48962590 48962797 -75113375 - ID_B1 SINE B4 -7 217 2 1 958 588 276 36 141 chr9 48963042 48963291 -75112881 - MTD LTR MaLR -156 223 1 1 958 274 62 0 59 chr9 48963692 48963743 -75112429 + (AGGGGG)n Simple_repeat Simple_repeat 3 50 0 1 958 234 290 0 0 chr9 48965376 48965445 -75110727 - MIR SINE MIR -5 257 189 1 958 1027 80 73 0 chr9 48965993 48966130 -75110042 + B1_Mm SINE Alu 1 147 0 1 958 225 0 0 0 chr9 48966130 48966155 -75110017 + (A)n Simple_repeat Simple_repeat 1 25 0 1 958 647 264 10 39 chr9 48966454 48966659 -75109513 + RMER15 LTR ERVL 363 561 -14 1 958 812 247 0 6 chr9 48966984 48967159 -75109013 - B3 SINE B2 -42 174 1 1 958 2831 252 108 60 chr9 48968329 48969396 -75106776 - Lx6 LINE L1 0 7460 6037 1 958 343 226 0 25 chr9 48970452 48970549 -75105623 + MLT1A LTR MaLR 1 95 -279 1 958 1576 243 136 39 chr9 48970785 48971353 -75104819 - Lx8 LINE L1 0 7473 6851 1 958 396 0 0 0 chr9 48971753 48971797 -75104375 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 958 246 368 3 29 chr9 48971807 48971934 -75104238 - RSINE1 SINE B4 -104 120 1 1 958 343 224 22 153 chr9 48971947 48972084 -75104088 + MLT1A LTR MaLR 181 299 -66 1 958 987 234 0 5 chr9 48972112 48972314 -75103858 - B3 SINE B2 -14 202 2 1 958 2396 63 119 11 chr9 48972674 48973026 -75103146 + RLTR10 LTR ERVK 1 390 0 1 958 408 263 235 0 chr9 48973917 48974096 -75102076 + ID_B1 SINE B4 4 224 0 1 958 194 228 133 47 chr9 48974313 48974445 -75101727 - MIRm SINE MIR -115 153 7 1 958 563 270 60 20 chr9 48975225 48975376 -75100796 + RSINE1 SINE B4 5 161 -4 1 958 417 39 0 0 chr9 48975381 48975432 -75100740 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 958 282 56 0 0 chr9 48975432 48975468 -75100704 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 958 266 0 0 29 chr9 48975469 48975504 -75100668 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 958 338 279 66 58 chr9 48975948 48975997 -75100175 - Lx8 LINE L1 -83 7390 7344 1 958 982 211 33 9 chr9 48975997 48976208 -75099964 - B3 SINE B2 0 216 1 1 958 338 279 66 58 chr9 48976208 48976295 -75099877 - Lx8 LINE L1 -130 7343 7253 1 958 263 238 73 24 chr9 48976333 48976415 -75099757 - MTEb LTR MaLR -21 358 273 1 958 344 317 62 26 chr9 48976966 48977193 -75098979 - L1MC5 LINE L1 -529 7432 7198 1 958 609 226 89 5 chr9 48977249 48977440 -75098732 - MER95 LTR ERV 0 431 225 1 958 287 244 86 81 chr9 48977600 48977810 -75098362 - MER33 DNA MER1_type -43 281 71 1 958 503 226 9 0 chr9 48977973 48978079 -75098093 + RSINE1 SINE B4 13 119 -46 1 958 2387 142 101 7 chr9 48978084 48978509 -75097663 - RMER1B Other Other -10 1056 592 1 958 598 196 194 13 chr9 48978505 48978660 -75097512 - RMER1B Other Other -819 247 65 1 958 34 24 0 0 chr9 48979237 48979278 -75096894 + AT_rich Low_complexity Low_complexity 1 41 0 1 958 1189 178 34 19 chr9 48979472 48979735 -75096437 - Lx2 LINE L1 -6 6991 6725 1 958 1730 76 60 0 chr9 48979735 48979984 -75096188 + MusHAL1 LINE L1 451 714 -1998 1 958 415 204 9 19 chr9 48979999 48980104 -75096068 - MT2A LTR ERVL -428 105 2 1 958 470 341 107 32 chr9 48980156 48980465 -75095707 + MLT1A LTR MaLR 28 359 -15 1 958 471 250 19 0 chr9 48980805 48980913 -75095259 + PB1D10 SINE Alu 2 111 -6 1 958 28 0 0 0 chr9 48980938 48980966 -75095206 + AT_rich Low_complexity Low_complexity 1 28 0 1 958 219 114 0 0 chr9 48982040 48982075 -75094097 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 1 958 776 246 142 4 chr9 48982298 48982531 -75093641 + B4A SINE B4 8 272 -20 1 958 536 261 7 55 chr9 48982937 48983083 -75093089 - ID_B1 SINE B4 -8 216 78 1 958 1077 231 35 35 chr9 48983136 48983419 -75092753 + B4A SINE B4 2 284 -8 1 958 824 266 77 144 chr9 48984038 48984350 -75091822 - B4 SINE B4 0 292 2 1 958 185 319 62 62 chr9 48984357 48984507 -75091665 - MER5A DNA MER1_type 0 189 29 1 958 621 120 37 8 chr9 48984717 48984851 -75091321 + G-rich Low_complexity Low_complexity 5 142 0 1 958 306 0 0 0 chr9 48985297 48985331 -75090841 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 958 447 19 0 0 chr9 48985331 48985382 -75090790 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 958 499 269 0 9 chr9 48985396 48985505 -75090667 - B1_Mur1 SINE Alu -41 108 1 1 958 23 0 0 0 chr9 48987125 48987148 -75089024 + AT_rich Low_complexity Low_complexity 1 23 0 1 958 422 192 39 0 chr9 48987412 48987490 -75088682 - PB1D7 SINE Alu -6 114 34 1 958 260 239 0 29 chr9 48987501 48987570 -75088602 + Lx8 LINE L1 6890 6956 -517 1 958 1192 225 111 93 chr9 48987614 48988138 -75088034 + Lx8 LINE L1 6936 7468 -5 1 958 469 304 101 68 chr9 48988206 48988602 -75087570 - MLT1C LTR MaLR -58 409 1 1 958 695 202 8 30 chr9 48988791 48988924 -75087248 + B1_Mus1 SINE Alu 1 130 -18 1 958 210 71 0 0 chr9 48988924 48988952 -75087220 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 958 423 243 100 17 chr9 48989078 48989258 -75086914 + Lx9 LINE L1 7386 7580 -64 1 958 238 341 0 0 chr9 48989676 48989758 -75086414 + CT-rich Low_complexity Low_complexity 1 82 0 1 958 1187 48 7 0 chr9 48990666 48990811 -75085361 - B1_Mus2 SINE Alu 0 147 2 1 958 425 34 0 17 chr9 48990897 48990957 -75085215 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 1 958 1488 73 10 5 chr9 48990957 48991151 -75085021 - B2_Mm2 SINE B2 0 195 1 1 958 1101 104 16 47 chr9 48991151 48991342 -75084830 - L1_Mus3 LINE L1 -15 6623 6439 1 958 1013 230 47 18 chr9 48992208 48992487 -75083685 + MLT2C2 LTR ERVL 1 287 -177 1 958 577 193 143 0 chr9 48992528 48992647 -75083525 + B1_Mur1 SINE Alu 5 140 -9 1 958 862 133 29 0 chr9 48992675 48992848 -75083324 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1 958 382 191 31 8 chr9 48993283 48993410 -75082762 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 958 187 309 0 0 chr9 48993525 48993580 -75082592 - MIR SINE MIR -182 80 26 1 958 3186 109 28 30 chr9 48993952 48994453 -75081719 - Lx LINE L1 0 6654 6155 1 958 412 132 0 194 chr9 48994453 48994504 -75081668 + RMER19B LTR ERVK 808 858 -44 1 958 581 101 0 0 chr9 48994504 48994593 -75081579 + L1_Mus3 LINE L1 6545 6633 -5 1 958 412 132 0 194 chr9 48994593 48994644 -75081528 + RMER19B LTR ERVK 859 890 -12 1 958 1123 303 83 61 chr9 48994907 48995039 -75081133 + MER63C DNA AcHobo 204 335 -595 1 958 890 148 0 66 chr9 48995039 48995191 -75080981 + B1_Mur1 SINE Alu 2 143 -6 1 958 1123 303 83 61 chr9 48995191 48995374 -75080798 + MER63C DNA AcHobo 336 502 -428 1 958 782 258 51 130 chr9 48995374 48995690 -75080482 - B4 SINE B4 0 292 2 1 958 1123 303 83 61 chr9 48995690 48996083 -75080089 + MER63C DNA AcHobo 503 929 -1 1 958 216 0 0 0 chr9 48996327 48996351 -75079821 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 958 340 335 69 51 chr9 48996354 48996628 -75079544 - B4A SINE B4 -12 280 2 1 958 440 263 0 0 chr9 48997635 48997730 -75078442 - B1F SINE Alu -42 107 13 1 958 413 268 71 31 chr9 48997751 48997878 -75078294 + ID_B1 SINE B4 84 215 -9 1 958 360 152 0 0 chr9 48997880 48997946 -75078226 + (TCTG)n Simple_repeat Simple_repeat 1 66 0 1 958 333 295 120 39 chr9 48999368 48999576 -75076596 + ORR1E LTR MaLR 44 268 -91 1 958 180 310 0 17 chr9 48999631 48999690 -75076482 + MIR3 SINE MIR 125 182 -26 1 958 354 123 0 0 chr9 48999821 48999878 -75076294 + ORR1A4 LTR MaLR 1 57 -272 1 958 1430 177 50 22 chr9 49000410 49000687 -75075485 + ORR1A4 LTR MaLR 43 327 -2 1 958 192 385 0 0 chr9 49000835 49000887 -75075285 + MIRb SINE MIR 40 91 -177 2 958 298 282 14 14 chr9 49001667 49001739 -75074433 + ID4 SINE ID 7 78 -5 3 958 3603 269 57 9 chr9 49001801 49002782 -75073390 - Lx8 LINE L1 -25 7448 6421 4 958 480 136 0 0 chr9 49002804 49002892 -75073280 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 958 582 316 42 7 chr9 49002928 49003126 -75073046 + B4A SINE B4 1 214 -78 6 958 695 279 128 64 chr9 49005019 49005471 -75070701 + Lx8 LINE L1 6857 7337 -136 7 958 298 191 176 0 chr9 49005482 49005550 -75070622 + Lx8 LINE L1 7384 7463 -10 7 958 727 228 119 5 chr9 49007021 49007215 -75068957 + B3 SINE B2 1 216 0 8 958 435 19 0 0 chr9 49007288 49007340 -75068832 + (TATG)n Simple_repeat Simple_repeat 2 53 0 9 958 229 135 0 0 chr9 49007369 49007406 -75068766 + B3A SINE B2 1 37 -161 1 958 439 196 0 26 chr9 49007516 49007631 -75068541 + CT-rich Low_complexity Low_complexity 5 116 0 1 958 314 300 0 0 chr9 49007700 49007770 -75068402 + ID4 SINE ID 8 77 -6 1 958 815 190 196 5 chr9 49007800 49008019 -75068153 + MTEa LTR MaLR 5 265 -114 1 958 478 327 135 48 chr9 49008103 49008415 -75067757 + MLT1G LTR MaLR 9 347 -244 1 958 518 385 25 41 chr9 49008577 49008821 -75067351 + MLT1G LTR MaLR 352 591 0 1 958 180 0 0 0 chr9 49009331 49009351 -75066821 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 958 466 304 24 0 chr9 49009513 49009638 -75066534 - B1F2 SINE Alu -1 148 21 1 958 313 419 10 20 chr9 49009859 49010061 -75066111 - L1MC4a LINE L1 -1939 5943 5744 1 958 404 235 39 19 chr9 49010061 49010165 -75066007 - MER5A1 DNA MER1_type -15 151 46 1 958 256 342 0 26 chr9 49010196 49010274 -75065898 - B4 SINE B4 -1 291 216 1 958 767 217 42 16 chr9 49010281 49010473 -75065699 - B3A SINE B2 0 198 2 2 958 386 227 111 22 chr9 49010476 49010611 -75065561 - B1F2 SINE Alu -2 147 1 2 958 900 287 56 9 chr9 49010637 49011019 -75065153 - L1MA4 LINE L1 -1614 5859 5491 2 958 549 0 0 0 chr9 49011163 49011224 -75064948 + (CAAAC)n Simple_repeat Simple_repeat 2 62 0 2 958 977 156 17 23 chr9 49011224 49011390 -75064782 - B2_Mm2 SINE B2 -29 166 2 2 958 270 167 67 0 chr9 49011422 49011482 -75064690 - L1MA4 LINE L1 -842 5458 5395 2 958 924 271 73 135 chr9 49011559 49011997 -75064175 - RLTR11B LTR ERVK -99 429 1 2 958 255 244 11 23 chr9 49012084 49012172 -75064000 - L1_Rod LINE L1 -617 5230 5144 2 958 642 296 116 50 chr9 49012169 49012482 -75063690 - L1MA4 LINE L1 -1015 5128 4802 2 958 1469 62 0 30 chr9 49012482 49012683 -75063489 - B2_Mm2 SINE B2 0 195 1 2 958 642 296 116 50 chr9 49012683 49012845 -75063327 - L1MA4 LINE L1 -1342 4801 4623 2 958 835 233 31 26 chr9 49012947 49013141 -75063031 - B3A SINE B2 0 198 4 2 958 376 287 107 69 chr9 49013367 49013498 -75062674 + B1F2 SINE Alu 13 148 -1 2 958 312 209 59 15 chr9 49013551 49013619 -75062553 - HAL1-3A_ME LINE L1 -504 2354 2284 3 958 483 289 9 0 chr9 49013655 49013769 -75062403 - PB1D9 SINE Alu 0 120 6 3 958 324 0 0 0 chr9 49013986 49014022 -75062150 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 958 183 304 37 37 chr9 49014842 49014924 -75061248 + L2c LINE L2 3034 3115 -272 3 958 273 57 0 0 chr9 49015156 49015191 -75060981 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 3 958 457 160 16 16 chr9 49015258 49015379 -75060793 - Lx9 LINE L1 0 7644 7524 3 958 396 0 0 0 chr9 49015379 49015423 -75060749 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 958 788 306 52 4 chr9 49016737 49017006 -75059166 - B4 SINE B4 -7 285 4 3 958 378 0 0 0 chr9 49017447 49017489 -75058683 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 958 189 263 0 95 chr9 49019799 49019862 -75056310 - L2b LINE L2 -309 3066 3010 3 958 208 314 0 28 chr9 49020064 49020136 -75056036 + MIR SINE MIR 24 93 -115 4 958 366 250 12 0 chr9 49020161 49020241 -75055931 - ID4_ SINE ID -1 82 2 4 958 378 223 44 110 chr9 49020256 49020303 -75055869 - B1F SINE Alu -9 140 100 4 958 1462 59 32 0 chr9 49020303 49020490 -75055682 - B2_Mm2 SINE B2 -2 193 1 4 958 378 223 44 110 chr9 49020490 49020578 -75055594 - B1F SINE Alu -50 99 14 4 958 248 331 80 29 chr9 49020702 49020839 -75055333 - LTR84b LTR ERVL 0 761 618 4 959 588 29 0 0 chr9 49021259 49021329 -75054843 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 4 959 418 304 70 27 chr9 49021494 49021680 -75054492 - L2b LINE L2 -702 2717 2524 3 959 331 325 122 81 chr9 49021956 49022291 -75053881 + ORR1E LTR MaLR 1 349 -10 4 959 363 89 0 0 chr9 49022487 49022543 -75053629 + (CTA)n Simple_repeat Simple_repeat 2 57 0 4 959 575 250 43 31 chr9 49022555 49022716 -75053456 - RSINE1 SINE B4 -2 163 1 4 959 1143 175 19 14 chr9 49023350 49023564 -75052608 - B3 SINE B2 0 216 2 4 959 441 0 0 0 chr9 49027165 49027214 -75048958 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 959 465 257 77 22 chr9 49027222 49027405 -75048767 + L1MA6 LINE L1 5658 5918 -382 5 959 620 275 138 20 chr9 49027710 49028014 -75048158 + L1MA6 LINE L1 5952 6291 -9 5 959 367 308 113 68 chr9 49028251 49028473 -75047699 - MER57D LTR ERV1 -24 412 183 5 959 536 254 26 0 chr9 49028474 49028588 -75047584 + B1F SINE Alu 25 141 -8 5 959 241 233 0 22 chr9 49028705 49028797 -75047375 + GA-rich Low_complexity Low_complexity 3 92 0 5 959 531 118 0 0 chr9 49029161 49029246 -75046926 + (GA)n Simple_repeat Simple_repeat 1 85 0 5 959 232 250 37 37 chr9 49030146 49030254 -75045918 + GA-rich Low_complexity Low_complexity 3 110 0 5 959 389 246 100 0 chr9 49030327 49030437 -75045735 - MLT1H LTR MaLR -412 137 17 5 959 486 0 0 0 chr9 49030528 49030582 -75045590 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 959 638 258 61 57 chr9 49030587 49030867 -75045305 - B4A SINE B4 -9 283 3 5 959 826 225 0 30 chr9 49031776 49031941 -75044231 + B3 SINE B2 2 161 -55 6 959 1098 118 0 0 chr9 49031942 49032112 -75044060 + (TA)n Simple_repeat Simple_repeat 2 171 0 6 959 360 242 37 20 chr9 49032246 49032354 -75043818 - MIRb SINE MIR -95 173 60 6 959 1122 214 15 0 chr9 49032399 49032605 -75043567 + B3 SINE B2 8 216 0 6 959 186 133 0 0 chr9 49033188 49033218 -75042954 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 6 959 2323 149 117 86 chr9 49033539 49033743 -75042429 + RLTR24 LTR ERV1 1 184 -345 6 959 1122 82 0 7 chr9 49033743 49033891 -75042281 - B1_Mm SINE Alu 0 147 1 6 959 2323 149 117 86 chr9 49033891 49034199 -75041973 + RLTR24 LTR ERV1 185 529 0 6 959 203 200 0 22 chr9 49034205 49034251 -75041921 + GA-rich Low_complexity Low_complexity 3 47 0 6 959 1265 247 47 13 chr9 49034256 49034555 -75041617 - MTE2b LTR MaLR -54 325 17 6 959 1252 269 129 25 chr9 49034809 49035327 -75040845 + Charlie21a DNA MER1_type 323 894 -319 6 959 364 345 40 45 chr9 49035515 49035691 -75040481 + ORR1E LTR MaLR 1 175 -184 7 959 249 33 0 0 chr9 49035920 49035950 -75040222 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 959 201 232 192 53 chr9 49036064 49036177 -75039995 + L2a LINE L2 3211 3339 -87 7 959 2382 120 6 3 chr9 49036177 49036535 -75039637 - RLTR15 LTR ERVK 0 359 1 7 959 201 232 192 53 chr9 49036535 49036608 -75039564 + L2a LINE L2 3340 3422 -4 7 959 327 256 61 0 chr9 49036764 49036846 -75039326 + Cheshire DNA MER1_type 172 258 -2162 7 959 253 259 0 0 chr9 49036868 49036922 -75039250 + Cheshire DNA MER1_type 2367 2420 0 7 959 477 286 43 7 chr9 49037401 49037542 -75038630 + MIRc SINE MIR 2 147 -121 7 959 353 306 292 10 chr9 49037659 49038080 -75038092 - L2a LINE L2 -112 3314 2776 7 959 307 230 0 0 chr9 49039000 49039074 -75037098 + L1M2 LINE L1 4781 4854 -1289 7 959 289 235 34 90 chr9 49039421 49039510 -75036662 + L1M2 LINE L1 4840 4923 -1220 7 959 459 0 0 0 chr9 49039532 49039583 -75036589 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 7 959 1800 301 83 25 chr9 49039625 49040568 -75035604 + L1_Mur3 LINE L1 4872 5868 -12 7 959 1586 227 23 133 chr9 49040568 49040620 -75035552 - MTC LTR MaLR 0 421 376 8 959 756 61 0 0 chr9 49040620 49040718 -75035454 + (CA)n Simple_repeat Simple_repeat 2 99 0 8 959 1586 227 23 133 chr9 49040718 49041138 -75035034 - MTC LTR MaLR -46 375 1 8 959 212 250 0 0 chr9 49041177 49041221 -75034951 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 959 824 304 6 70 chr9 49042129 49042444 -75033728 - L1MB8 LINE L1 -29 6149 5855 8 959 504 294 144 61 chr9 49042523 49042602 -75033570 - B4 SINE B4 -4 288 213 8 959 1191 112 0 0 chr9 49042602 49042781 -75033391 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 8 959 504 294 144 61 chr9 49042781 49042965 -75033207 - B4 SINE B4 -80 212 3 8 959 468 243 27 32 chr9 49043190 49043331 -75032841 - L1MB8 LINE L1 -497 5665 5522 8 959 495 0 0 0 chr9 49043518 49043573 -75032599 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 959 243 320 146 0 chr9 49044423 49044526 -75031646 + PB1 SINE Alu 6 123 -4 8 959 22 0 0 0 chr9 49044774 49044796 -75031376 + AT_rich Low_complexity Low_complexity 1 22 0 8 959 1293 252 34 98 chr9 49044979 49045366 -75030806 + MTE2a LTR MaLR 18 379 0 8 959 493 303 70 30 chr9 49046016 49046366 -75029806 + L1_Mur3 LINE L1 1773 2128 -3752 9 959 309 109 0 0 chr9 49046617 49046663 -75029509 + (TAA)n Simple_repeat Simple_repeat 2 47 0 9 959 582 291 55 36 chr9 49046665 49046918 -75029254 + L1_Mur3 LINE L1 2181 2438 -3442 9 959 532 269 48 21 chr9 49047172 49047358 -75028814 - MER53 DNA hAT -1 192 2 9 959 453 296 180 8 chr9 49047411 49047656 -75028516 + B4A SINE B4 1 287 -5 9 959 277 62 20 20 chr9 49048029 49048078 -75028094 + (TCC)n Simple_repeat Simple_repeat 1 49 0 9 959 300 287 0 12 chr9 49048078 49048172 -75028000 - ID2 SINE ID -53 99 7 9 959 766 265 38 38 chr9 49048299 49048589 -75027583 - B4 SINE B4 -1 291 2 9 959 510 268 106 13 chr9 49048633 49048784 -75027388 - RSINE1 SINE B4 0 165 1 9 959 779 255 7 0 chr9 49049202 49049254 -75026918 + ID SINE ID 29 81 -143 9 959 460 281 26 17 chr9 49049254 49049370 -75026802 + PB1D10 SINE Alu 1 117 0 9 959 21 0 0 0 chr9 49050673 49050694 -75025478 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 989 232 66 5 chr9 49050773 49050985 -75025187 + MTD LTR MaLR 19 243 -176 1 959 546 124 0 0 chr9 49050985 49051074 -75025098 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 959 871 240 17 83 chr9 49051080 49051321 -75024851 - B4 SINE B4 0 292 68 1 959 255 331 70 39 chr9 49052236 49052365 -75023807 - MIRb SINE MIR -78 190 58 1 959 339 237 0 38 chr9 49052416 49052495 -75023677 - L3 LINE CR1 -1802 2687 2612 1 959 388 317 124 30 chr9 49052516 49052783 -75023389 - L3 LINE CR1 -1990 2499 2208 1 959 202 204 23 0 chr9 49052986 49053030 -75023142 + CT-rich Low_complexity Low_complexity 2 46 0 1 959 198 103 0 0 chr9 49053252 49053281 -75022891 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 1 959 1275 44 0 0 chr9 49053310 49053468 -75022704 + (TTTC)n Simple_repeat Simple_repeat 1 158 0 1 959 571 236 65 0 chr9 49053468 49053591 -75022581 - ID_B1 SINE B4 -13 211 81 1 959 237 331 27 75 chr9 49053601 49053748 -75022424 + MIRb SINE MIR 129 268 0 1 959 1356 95 16 5 chr9 49054099 49054290 -75021882 + B2_Mm2 SINE B2 1 193 -2 1 959 201 377 13 0 chr9 49055242 49055319 -75020853 + MIRb SINE MIR 133 210 -58 1 959 180 0 0 0 chr9 49056229 49056249 -75019923 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 959 431 202 9 0 chr9 49056456 49056570 -75019602 + (CAGT)n Simple_repeat Simple_repeat 4 118 0 1 959 621 351 83 40 chr9 49056965 49057363 -75018809 - MLT1H2 LTR MaLR 0 489 75 1 959 327 339 8 8 chr9 49057828 49057953 -75018219 + GA-rich Low_complexity Low_complexity 3 127 0 1 959 732 240 21 11 chr9 49058426 49058635 -75017537 - B3A SINE B2 -6 210 1 1 959 420 20 0 0 chr9 49059202 49059251 -75016921 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 959 232 257 95 0 chr9 49059422 49059496 -75016676 - ID4 SINE ID 0 83 3 1 959 344 291 54 47 chr9 49059672 49059701 -75016471 + ID_B1 SINE B4 76 211 -13 1 959 422 239 33 58 chr9 49059701 49059805 -75016367 + B1F SINE Alu 29 136 -13 1 959 225 0 0 0 chr9 49059805 49059830 -75016342 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1 959 344 291 54 47 chr9 49059830 49059844 -75016328 + ID_B1 SINE B4 212 224 0 1 959 351 0 0 0 chr9 49060059 49060098 -75016074 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1 959 371 286 16 56 chr9 49060155 49060281 -75015891 + MLT1A LTR MaLR 1 121 -253 1 959 273 298 103 24 chr9 49060483 49060648 -75015524 + MLT1A LTR MaLR 189 366 -8 1 959 649 261 6 31 chr9 49060745 49060907 -75015265 + RSINE1 SINE B4 3 160 -5 1 959 365 228 136 0 chr9 49061347 49061509 -75014663 - L1M7 LINE L1 -3981 2237 2054 1 959 279 54 0 0 chr9 49061517 49061554 -75014618 + (TATG)n Simple_repeat Simple_repeat 2 38 0 1 959 630 285 40 5 chr9 49061556 49061757 -75014415 - ID_B1 SINE B4 -13 211 4 1 959 597 289 72 28 chr9 49061955 49062275 -75013897 - L1M7 LINE L1 -5331 887 554 1 959 1183 271 53 19 chr9 49062386 49062706 -75013466 + MTE2b LTR MaLR 45 375 -4 1 959 922 171 120 35 chr9 49063317 49063517 -75012655 + ID_B1 SINE B4 2 218 -6 1 959 869 105 113 0 chr9 49063537 49063670 -75012502 + B1_Mus1 SINE Alu 1 148 0 1 959 321 26 0 0 chr9 49063670 49063708 -75012464 + (A)n Simple_repeat Simple_repeat 1 38 0 1 959 547 306 12 18 chr9 49064909 49065072 -75011100 + RSINE1 SINE B4 2 163 -2 1 959 368 192 63 13 chr9 49066302 49066381 -75009791 - B4A SINE B4 -208 84 2 1 959 848 245 171 12 chr9 49066712 49067034 -75009138 - ORR1D1 LTR MaLR 0 374 2 1 959 520 331 106 49 chr9 49067118 49067467 -75008705 + LTR16C LTR ERVL 117 485 -4 1 959 474 160 54 45 chr9 49067727 49067838 -75008334 + B4A SINE B4 8 119 -173 1 959 2249 113 3 65 chr9 49068189 49068558 -75007614 + ORR1A1 LTR MaLR 1 346 0 1 959 516 247 158 18 chr9 49069663 49069828 -75006344 + ID_B1 SINE B4 19 206 -18 1 959 594 307 27 0 chr9 49069842 49069992 -75006180 + RSINE1 SINE B4 5 158 -7 1 959 611 244 115 11 chr9 49072441 49072615 -75003557 + ID_B1 SINE B4 13 204 -20 1 959 340 355 36 7 chr9 49073688 49073827 -75002345 + RSINE1 SINE B4 1 143 -22 1 959 433 246 48 48 chr9 49073952 49074097 -75002075 + ORR1D2 LTR MaLR 199 343 -27 1 959 447 272 14 35 chr9 49074806 49074947 -75001225 + ORR1E LTR MaLR 1 138 -221 1 959 1151 294 22 14 chr9 49075235 49075594 -75000578 + MTEa LTR MaLR 18 379 0 1 959 204 219 0 0 chr9 49075798 49075839 -75000333 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 959 294 275 21 21 chr9 49076250 49076343 -74999829 - MER5B DNA MER1_type -27 151 59 1 959 273 263 0 0 chr9 49077466 49077523 -74998649 - Tigger7 DNA MER2_type -43 2448 2392 1 959 366 335 132 36 chr9 49077570 49077821 -74998351 - Tigger7 DNA MER2_type -2117 374 99 1 959 404 172 160 31 chr9 49077823 49077940 -74998232 + B1F SINE Alu 1 136 -13 1 959 336 83 0 0 chr9 49077940 49077988 -74998184 + (CAGC)n Simple_repeat Simple_repeat 3 50 0 1 959 404 204 43 69 chr9 49077988 49078006 -74998166 + B1F SINE Alu 137 148 -1 1 959 626 163 105 33 chr9 49078060 49078212 -74997960 + B2_Mm2 SINE B2 2 164 -31 1 959 324 269 186 18 chr9 49078256 49078425 -74997747 - MTEa LTR MaLR 0 359 164 1 959 203 171 0 0 chr9 49078427 49078468 -74997704 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1 959 356 374 42 26 chr9 49078494 49078686 -74997486 - MTEa LTR MaLR -184 195 1 1 959 244 229 49 0 chr9 49078753 49078814 -74997358 + MER3 DNA MER1_type 20 83 -126 1 959 2047 162 53 3 chr9 49079085 49079445 -74996727 - ORR1C1 LTR MaLR 0 378 1 1 959 232 262 112 0 chr9 49079749 49079829 -74996343 + MIR3 SINE MIR 66 154 -54 1 959 23 0 0 0 chr9 49079987 49080010 -74996162 + AT_rich Low_complexity Low_complexity 1 23 0 1 959 201 349 0 19 chr9 49080215 49080228 -74995944 + polypyrimidine Low_complexity Low_complexity 95 107 0 1 959 930 247 228 13 chr9 49080228 49080540 -74995632 - MTE2b LTR MaLR 0 379 1 1 959 201 349 0 19 chr9 49080540 49080634 -74995538 + CT-rich Low_complexity Low_complexity 3 94 0 1 959 718 303 82 34 chr9 49082079 49082467 -74993705 - MTD LTR MaLR 0 419 1 1 959 1193 209 124 91 chr9 49082619 49083067 -74993105 - RMER4B LTR ERVK 0 585 66 1 959 1200 49 0 0 chr9 49083067 49083209 -74992963 + B1_Mm SINE Alu 2 143 -4 1 959 1193 212 147 114 chr9 49083209 49083293 -74992879 - RMER4B LTR ERVK -520 65 1 1 959 217 320 0 13 chr9 49084047 49084123 -74992049 + CT-rich Low_complexity Low_complexity 2 76 0 1 959 294 143 0 0 chr9 49084928 49084977 -74991195 + (TCC)n Simple_repeat Simple_repeat 2 50 0 1 959 777 133 0 0 chr9 49085409 49085544 -74990628 + (TG)n Simple_repeat Simple_repeat 2 136 0 1 959 512 287 165 15 chr9 49085826 49086156 -74990016 - MLT1B LTR MaLR 0 390 14 1 959 379 227 94 10 chr9 49086288 49086454 -74989718 - L1MA6 LINE L1 -24 6276 6101 1 959 1403 65 0 5 chr9 49086519 49086705 -74989467 + L1_Mus2 LINE L1 6382 6566 0 1 959 303 259 95 15 chr9 49087073 49087210 -74988962 - L1M2a LINE L1 -1614 5550 5403 1 959 653 221 71 7 chr9 49087288 49087443 -74988729 + Lx4A LINE L1 6893 7057 -1 1 959 28 0 0 0 chr9 49087444 49087472 -74988700 + AT_rich Low_complexity Low_complexity 1 28 0 1 959 610 232 7 27 chr9 49087497 49087643 -74988529 - B1F SINE Alu -1 148 6 1 959 2045 285 95 32 chr9 49087661 49088732 -74987440 - L1_Mur3 LINE L1 -1593 4287 3149 1 959 599 318 34 134 chr9 49088739 49089120 -74987052 - ORR1E LTR MaLR -16 343 1 1 959 306 181 37 37 chr9 49089124 49089233 -74986939 - L1M2a LINE L1 -2946 4218 4110 1 959 315 271 21 10 chr9 49089381 49089478 -74986694 - PB1D10 SINE Alu -19 98 1 1 959 621 297 38 24 chr9 49089478 49089768 -74986404 - L1M2a LINE L1 -3048 4116 3823 1 959 427 334 63 46 chr9 49089847 49090069 -74986103 - L1M2a LINE L1 -3541 3623 3411 1 959 1851 227 27 15 chr9 49090069 49090481 -74985691 + MTD LTR MaLR 3 419 0 1 959 427 330 43 39 chr9 49090481 49090764 -74985408 - L1M2a LINE L1 -3754 3410 3114 1 959 280 293 85 17 chr9 49090885 49091062 -74985110 - L1M2a LINE L1 -4498 2670 2482 1 959 267 31 0 0 chr9 49091298 49091330 -74984842 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 959 320 328 54 27 chr9 49091725 49092020 -74984152 - L1M2a LINE L1 -4971 2197 1895 1 959 594 306 47 18 chr9 49093590 49093929 -74982243 - L1M5 LINE L1 -1726 4420 4072 1 959 1690 246 114 29 chr9 49094192 49094682 -74981490 - Lx6 LINE L1 -6 7454 6923 1 959 288 50 50 0 chr9 49094679 49094719 -74981453 + Lx7 LINE L1 6883 6924 -772 1 959 470 172 192 0 chr9 49094828 49094927 -74981245 - RSINE1 SINE B4 -46 119 2 1 959 1564 191 139 12 chr9 49095138 49095482 -74980690 + MTD LTR MaLR 1 388 -31 1 959 753 158 0 0 chr9 49095485 49095624 -74980548 + CT-rich Low_complexity Low_complexity 3 141 0 1 959 980 151 42 21 chr9 49095636 49095825 -74980347 - B2_Mm2 SINE B2 -2 193 1 1 959 726 34 0 0 chr9 49095839 49095928 -74980244 + (TTC)n Simple_repeat Simple_repeat 3 91 0 1 959 552 219 59 0 chr9 49096626 49096745 -74979427 + L1_Mur2 LINE L1 527 652 -6060 1 959 252 91 0 0 chr9 49096744 49096777 -74979395 - L1_Mur1 LINE L1 -2854 3032 3000 1 959 10211 232 154 9 chr9 49096782 49097150 -74979022 + Lx5 LINE L1 2406 2862 -3021 1 959 432 0 0 0 chr9 49097150 49097198 -74978974 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 959 14522 166 44 9 chr9 49097198 49098259 -74977913 + Lx5 LINE L1 2863 4273 -1610 1 959 315 0 0 0 chr9 49098259 49098294 -74977878 + (CTAAA)n Simple_repeat Simple_repeat 2 36 0 1 959 14522 161 35 9 chr9 49098294 49098862 -74977310 + Lx5 LINE L1 4269 4829 -1048 1 959 210 37 0 0 chr9 49098862 49098889 -74977283 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 959 14522 176 35 10 chr9 49098889 49101059 -74975113 + Lx5 LINE L1 4830 7050 0 1 959 834 228 67 5 chr9 49101088 49101282 -74974890 + B3 SINE B2 10 215 -1 1 959 25 0 0 0 chr9 49101282 49101307 -74974865 + AT_rich Low_complexity Low_complexity 1 25 0 1 959 1186 45 0 0 chr9 49101378 49101532 -74974640 + ORR1A1 LTR MaLR 138 291 -55 1 959 2336 303 84 29 chr9 49101548 49102528 -74973644 + Lx8 LINE L1 6432 7465 -8 1 959 396 173 315 45 chr9 49102590 49102790 -74973382 - MLT1F LTR MaLR -60 488 235 1 959 329 181 32 11 chr9 49102828 49102923 -74973249 + GA-rich Low_complexity Low_complexity 6 102 0 1 959 1620 0 0 0 chr9 49102923 49103103 -74973069 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 1 959 511 329 6 13 chr9 49104606 49104763 -74971409 - RMER15 LTR ERVL -124 451 296 2 959 760 182 234 16 chr9 49106087 49106271 -74969901 - URR1B DNA MER1_type 0 225 2 2 959 249 315 92 48 chr9 49106517 49106744 -74969428 + L1ME4a LINE L1 5700 5936 -188 2 959 5574 140 24 22 chr9 49108719 49109398 -74966774 + L1_Mus3 LINE L1 395 1062 -5572 2 959 270 0 0 0 chr9 49109398 49109428 -74966744 + (ATG)n Simple_repeat Simple_repeat 1 30 0 2 959 21691 124 34 16 chr9 49109428 49112279 -74963893 + L1_Mus3 LINE L1 1063 4023 -1860 2 959 1877 141 96 34 chr9 49112279 49112726 -74963446 - IAPLTR2_Mm LTR ERVK 0 475 1 2 959 21691 121 30 26 chr9 49112726 49114106 -74962066 + L1_Mus3 LINE L1 4024 5409 -474 2 959 814 112 168 0 chr9 49114106 49114231 -74961941 + B1_Mus1 SINE Alu 3 148 0 2 959 21691 121 30 26 chr9 49114231 49114271 -74961901 + L1_Mus3 LINE L1 5410 5410 -473 2 959 207 0 0 0 chr9 49114271 49114294 -74961878 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 959 21691 95 7 7 chr9 49114294 49115147 -74961025 + L1_Mus3 LINE L1 5410 6253 -385 2 959 1637 87 29 59 chr9 49115138 49115433 -74960739 + L1_Mus3 LINE L1 6381 6638 0 2 959 331 354 73 17 chr9 49115699 49115877 -74960295 - MLT1H LTR MaLR -245 304 117 2 959 324 0 0 0 chr9 49116467 49116503 -74959669 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 959 1262 182 76 8 chr9 49116549 49116798 -74959374 - RMER20A LTR ERVK -250 266 1 2 959 196 303 11 22 chr9 49116903 49116994 -74959178 - L2 LINE L2 -2883 536 447 2 959 636 14 0 0 chr9 49117299 49117372 -74958800 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 959 357 24 0 0 chr9 49117373 49117415 -74958757 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 959 342 278 88 44 chr9 49118702 49118883 -74957289 - MER117 DNA MER1_type -8 189 1 2 959 1704 194 74 38 chr9 49120587 49120952 -74955220 + ORR1C1 LTR MaLR 1 378 0 2 959 393 22 0 0 chr9 49121877 49121923 -74954249 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 2 959 479 321 69 39 chr9 49122127 49122331 -74953841 - LTR33 LTR ERVL -7 508 299 2 959 292 272 25 42 chr9 49122983 49123102 -74953070 + PB1D10 SINE Alu 1 117 0 2 959 472 166 13 6 chr9 49124985 49125143 -74951029 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 2 959 935 257 67 91 chr9 49125147 49125519 -74950653 - MTEa LTR MaLR -2 377 15 2 959 182 345 162 26 chr9 49126476 49126741 -74949431 - L2 LINE L2 -513 2906 2606 2 959 244 303 62 27 chr9 49127111 49127223 -74948949 + MLT1N2 LTR MaLR 404 519 -43 2 959 490 264 6 130 chr9 49127858 49128019 -74948153 + B1_Mur2 SINE Alu 4 144 -5 2 959 2420 186 26 22 chr9 49128035 49128540 -74947632 + RLTR18B LTR ERVK 1 507 -5 2 959 712 210 29 0 chr9 49128620 49128758 -74947414 + B1_Mur4 SINE Alu 2 143 -7 2 959 183 85 64 0 chr9 49128760 49128807 -74947365 + (CAAAC)n Simple_repeat Simple_repeat 5 54 0 2 959 1353 261 19 3 chr9 49128879 49129187 -74946985 + RLTR18-int LTR ERVK 89 401 -4960 2 959 1073 239 112 31 chr9 49129305 49129599 -74946573 + RLTR18-int LTR ERVK 2105 2422 -2939 2 959 7659 79 9 3 chr9 49130608 49131614 -74944558 - L1_Mus3 LINE L1 -6 6632 5621 2 959 1292 118 4 31 chr9 49131596 49131823 -74944349 - L1_Mus3 LINE L1 -462 5421 5201 2 959 2644 189 143 64 chr9 49132157 49132981 -74943191 + RMER19B LTR ERVK 2 890 -12 2 959 886 119 7 20 chr9 49133564 49133710 -74942462 + RLTR18-int LTR ERVK 4124 4267 -1094 2 959 39364 5 0 0 chr9 49133710 49139279 -74936893 + L1Md_A LINE L1 18 5586 -297 2 959 9224 2 0 0 chr9 49139279 49140275 -74935897 + L1Md_A LINE L1 5587 6582 0 2 959 3249 201 9 32 chr9 49140276 49140923 -74935249 + RLTR18-int LTR ERVK 4252 4883 -478 2 959 378 0 0 0 chr9 49141486 49141528 -74934644 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 959 243 0 0 0 chr9 49141528 49141554 -74934618 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 959 523 43 0 0 chr9 49141744 49141813 -74934359 - ORR1A3-int LTR MaLR -170 1793 1725 2 959 1851 80 11 15 chr9 49141813 49142081 -74934091 + L1_Mus3 LINE L1 6366 6632 -6 2 959 2013 130 0 3 chr9 49142082 49142390 -74933782 + Lx LINE L1 5709 6015 -639 2 959 3141 97 13 6 chr9 49142390 49142866 -74933306 - ORR1A3-int LTR MaLR -237 1726 1248 2 959 1266 130 0 5 chr9 49142863 49143072 -74933100 + ORR1A2-int LTR MaLR 1756 1963 0 2 959 1590 131 34 0 chr9 49143072 49143339 -74932833 + ORR1A2 LTR MaLR 1 276 -51 2 959 2012 132 35 9 chr9 49143347 49143690 -74932482 + RLTR18-int LTR ERVK 4892 5243 -118 2 959 1896 158 12 3 chr9 49143695 49144019 -74932153 + RLTR18B LTR ERVK 182 508 -4 2 959 635 298 95 34 chr9 49144021 49144171 -74932001 + B4 SINE B4 13 177 -115 2 959 423 0 0 0 chr9 49144171 49144218 -74931954 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 2 959 635 298 95 34 chr9 49144218 49144259 -74931913 + B4 SINE B4 178 215 -77 2 959 288 0 0 0 chr9 49144259 49144291 -74931881 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 2 959 635 298 95 34 chr9 49144291 49144362 -74931810 + B4 SINE B4 216 291 -1 2 959 1803 186 35 19 chr9 49144402 49144770 -74931402 - ORR1D1 LTR MaLR 0 374 1 2 959 1087 251 92 13 chr9 49144840 49145231 -74930941 - L1MB3 LINE L1 -56 6127 5706 2 959 475 327 24 30 chr9 49145232 49145312 -74930860 + ID SINE ID 5 83 -141 2 959 212 347 71 10 chr9 49145312 49145411 -74930761 + B1F2 SINE Alu 1 105 -44 2 959 288 231 0 0 chr9 49145984 49146049 -74930123 + MLT1A0 LTR MaLR 212 276 -89 2 959 876 302 44 22 chr9 49146047 49146321 -74929851 + B4A SINE B4 11 290 -2 2 959 201 350 11 0 chr9 49146942 49147055 -74929117 - MIRc SINE MIR -90 178 62 2 959 197 323 52 31 chr9 49147438 49147534 -74928638 + MIR3 SINE MIR 107 204 -4 2 959 204 135 0 0 chr9 49148587 49148624 -74927548 + (CCCCG)n Simple_repeat Simple_repeat 2 38 0 2 959 291 325 0 0 chr9 49150222 49150302 -74925870 - BC1_Mm scRNA scRNA -61 91 12 2 959 183 129 0 0 chr9 49150557 49150588 -74925584 + (CATA)n Simple_repeat Simple_repeat 1 31 0 2 960 396 0 0 0 chr9 49152856 49152900 -74923272 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 960 369 271 73 55 chr9 49153570 49153789 -74922383 - MIRb SINE MIR -1 267 45 2 960 586 314 101 39 chr9 49153947 49154115 -74922057 - B4A SINE B4 -16 276 88 2 960 3463 74 0 4 chr9 49154115 49154565 -74921607 - L1Md_F2 LINE L1 -1 6581 6134 2 960 586 314 101 39 chr9 49154565 49154654 -74921518 - B4A SINE B4 -205 87 3 2 960 196 362 0 0 chr9 49155489 49155558 -74920614 + MIRc SINE MIR 48 116 -152 2 960 720 268 100 23 chr9 49156130 49156390 -74919782 + B4A SINE B4 2 281 -11 2 960 414 39 0 0 chr9 49156407 49156459 -74919713 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 960 342 0 0 0 chr9 49156496 49156534 -74919638 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 2 960 696 312 83 14 chr9 49157115 49157596 -74918576 + MLT1F1 LTR MaLR 6 562 -7 2 960 311 355 60 54 chr9 49157891 49158242 -74917930 - L2a LINE L2 0 3426 3074 2 960 239 177 16 0 chr9 49158674 49158736 -74917436 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 960 539 233 38 15 chr9 49158751 49158882 -74917290 - B4A SINE B4 -8 284 151 2 960 209 122 0 24 chr9 49158882 49158924 -74917248 + (TGG)n Simple_repeat Simple_repeat 2 42 0 2 960 565 245 14 41 chr9 49158936 49159081 -74917091 - B4A SINE B4 -144 148 8 2 960 895 286 37 34 chr9 49159750 49160018 -74916154 + B4A SINE B4 2 270 -22 2 960 531 0 0 0 chr9 49160019 49160078 -74916094 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 960 21 36 0 0 chr9 49160154 49160182 -74915990 + AT_rich Low_complexity Low_complexity 1 28 0 2 960 201 318 28 125 chr9 49160197 49160373 -74915799 + MIRb SINE MIR 90 248 -20 2 960 590 245 25 46 chr9 49160394 49160591 -74915581 + B3 SINE B2 9 201 -15 2 960 4108 40 0 0 chr9 49160817 49161292 -74914880 - MT2C_Mm LTR ERVL 0 475 1 2 960 193 339 84 46 chr9 49161434 49161718 -74914454 - L2a LINE L2 -465 2954 2660 2 960 915 250 54 0 chr9 49163621 49163825 -74912347 + ID_B1 SINE B4 8 222 -2 2 960 1046 283 110 10 chr9 49164254 49164672 -74911500 - MLT1C LTR MaLR -2 465 6 2 960 544 279 12 79 chr9 49166270 49166511 -74909661 - MTEa LTR MaLR -1 378 154 2 960 607 246 28 14 chr9 49167119 49167263 -74908909 + B1_Mur1 SINE Alu 4 149 0 2 960 271 224 29 29 chr9 49167326 49167395 -74908777 + B4 SINE B4 180 248 -44 2 960 360 0 0 0 chr9 49167404 49167444 -74908728 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 960 426 197 11 53 chr9 49167479 49167667 -74908505 + GA-rich Low_complexity Low_complexity 1 180 0 2 960 428 91 22 22 chr9 49169179 49169269 -74906903 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 960 306 0 0 0 chr9 49169475 49169509 -74906663 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 960 286 258 9 114 chr9 49169562 49169667 -74906505 - PB1D10 SINE Alu -16 101 8 2 960 776 225 94 0 chr9 49169582 49169742 -74906430 - B4 SINE B4 -115 177 3 2 960 772 234 10 61 chr9 49169778 49169974 -74906198 - B3A SINE B2 0 198 13 2 960 896 258 58 11 chr9 49170585 49170863 -74905309 - B4A SINE B4 0 292 2 2 960 406 267 108 14 chr9 49170968 49171116 -74905056 - L1MB1 LINE L1 -186 5982 5821 2 960 741 304 119 49 chr9 49171307 49171696 -74904476 - L1MA7 LINE L1 -2 6289 5881 2 960 572 255 35 98 chr9 49171847 49172021 -74904151 - RSINE1 SINE B4 0 165 3 2 960 522 248 35 42 chr9 49172196 49172339 -74903833 - B1F SINE Alu 0 149 8 2 960 850 241 0 42 chr9 49172416 49172607 -74903565 - B3A SINE B2 -11 187 5 2 960 691 311 46 41 chr9 49172621 49173033 -74903139 - L1MA7 LINE L1 -841 5299 4886 2 960 453 298 23 34 chr9 49173231 49173408 -74902764 - L1M3 LINE L1 -506 5665 5491 2 960 206 346 62 31 chr9 49174203 49174364 -74901808 + L2c LINE L2 3205 3370 -17 2 960 440 175 0 10 chr9 49174787 49174885 -74901287 + GA-rich Low_complexity Low_complexity 1 97 0 2 960 540 111 0 0 chr9 49175127 49175226 -74900946 + (CA)n Simple_repeat Simple_repeat 2 100 0 2 960 222 37 0 0 chr9 49175226 49175252 -74900920 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 960 345 276 92 23 chr9 49175648 49175778 -74900394 - LTR37B LTR ERV1 0 468 330 2 960 650 231 0 44 chr9 49175794 49175930 -74900242 + B1F SINE Alu 20 149 0 2 960 500 308 104 71 chr9 49175936 49176244 -74899928 + Lx8 LINE L1 7146 7463 -10 2 960 681 326 214 14 chr9 49176583 49177097 -74899075 - ERVL-int LTR ERVL -3561 2196 1580 2 960 245 328 71 28 chr9 49177139 49177280 -74898892 + MIR SINE MIR 2 148 -120 2 960 292 244 99 66 chr9 49177663 49177834 -74898338 - ORR1E LTR MaLR -8 362 198 2 960 338 336 19 0 chr9 49177964 49178071 -74898101 - MLT2B2 LTR ERVL -406 109 1 2 960 318 311 37 28 chr9 49179618 49179727 -74896445 - MIRc SINE MIR -138 130 21 2 960 189 178 0 0 chr9 49180357 49180402 -74895770 + (TAA)n Simple_repeat Simple_repeat 1 45 0 3 960 209 231 32 21 chr9 49180570 49180663 -74895509 + (TA)n Simple_repeat Simple_repeat 1 94 0 3 960 2237 148 28 0 chr9 49180764 49181121 -74895051 - ORR1D1 LTR MaLR 0 374 8 3 960 493 239 144 28 chr9 49182247 49182428 -74893744 + L1MD3 LINE L1 7767 7968 -27 3 960 592 243 40 13 chr9 49182438 49182588 -74893584 + ID_B1 SINE B4 70 223 -1 3 960 371 217 0 12 chr9 49182733 49182817 -74893355 - L1MC4a LINE L1 -264 7618 7536 3 960 609 295 62 36 chr9 49183292 49183693 -74892479 - MTE2b LTR MaLR 0 379 15 3 960 10465 79 9 2 chr9 49183715 49185849 -74890323 - L1_Mus1 LINE L1 -1 6566 4414 3 960 369 0 0 0 chr9 49187550 49187591 -74888581 + (TTA)n Simple_repeat Simple_repeat 3 43 0 3 960 441 170 149 18 chr9 49188243 49188357 -74887815 + ID_B1 SINE B4 93 221 -3 3 960 263 74 12 12 chr9 49188441 49188496 -74887676 - B1_Mur4 SINE Alu 0 150 95 3 960 264 356 67 22 chr9 49188488 49188623 -74887549 - MER102b DNA MER1_type -200 141 1 3 960 769 220 0 0 chr9 49189380 49189521 -74886651 + B1F SINE Alu 1 141 -8 3 960 718 270 28 22 chr9 49189530 49189727 -74886445 + B3A SINE B2 1 193 0 3 960 287 229 0 32 chr9 49189743 49189806 -74886366 + RSINE1 SINE B4 6 66 -99 3 960 308 254 0 15 chr9 49189832 49189900 -74886272 - ID4_ SINE ID -16 67 1 3 960 254 235 134 12 chr9 49190688 49190770 -74885402 - MIR SINE MIR -57 205 114 3 960 595 225 49 7 chr9 49190771 49190914 -74885258 + B1_Mur2 SINE Alu 1 149 0 3 960 233 173 113 19 chr9 49191487 49191540 -74884632 + MLT1A LTR MaLR 246 303 -71 3 960 1626 215 64 0 chr9 49191739 49192069 -74884103 - MTD LTR MaLR -68 351 1 3 960 271 298 78 25 chr9 49192077 49192240 -74883932 + MIR SINE MIR 83 256 -6 3 960 371 267 77 82 chr9 49192592 49192667 -74883505 - L1MC5 LINE L1 -45 7916 7858 3 960 1439 63 10 25 chr9 49192667 49192863 -74883309 - B2_Mm2 SINE B2 -1 194 2 3 960 371 267 77 82 chr9 49192863 49193007 -74883165 - L1MC5 LINE L1 -104 7857 7698 3 960 770 252 0 0 chr9 49193026 49193169 -74883003 + ID_B1 SINE B4 82 224 0 3 960 365 307 79 48 chr9 49193170 49193399 -74882773 - L1MC5 LINE L1 -268 7693 7458 3 960 360 186 26 0 chr9 49194123 49194236 -74881936 + GA-rich Low_complexity Low_complexity 1 116 0 3 960 270 0 0 0 chr9 49194563 49194593 -74881579 + (T)n Simple_repeat Simple_repeat 1 30 0 3 960 210 367 25 0 chr9 49195497 49195576 -74880596 - L2b LINE L2 -18 3357 3277 3 960 4437 37 0 2 chr9 49195854 49196368 -74879804 - L1_Mus1 LINE L1 0 6567 6055 3 960 353 271 139 84 chr9 49196766 49197004 -74879168 - ORR1E LTR MaLR -105 254 4 3 960 560 273 40 136 chr9 49199937 49200187 -74875985 - MLT1B LTR MaLR -160 230 5 3 960 260 219 114 49 chr9 49200629 49200740 -74875432 + MIRb SINE MIR 128 252 -16 3 960 358 314 57 7 chr9 49200972 49201113 -74875059 + B1F SINE Alu 1 148 -1 3 960 243 229 82 41 chr9 49201126 49201199 -74874973 + ID4_ SINE ID 8 83 0 3 960 186 299 0 69 chr9 49201225 49201297 -74874875 + L2b LINE L2 3309 3375 0 3 960 365 338 43 0 chr9 49201548 49201687 -74874485 - Charlie22a DNA MER1_type 0 491 347 3 960 953 125 54 42 chr9 49202010 49202026 -74874146 - B2_Mm2 SINE B2 -24 171 162 3 960 661 38 0 45 chr9 49202026 49202136 -74874036 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 3 960 953 125 54 42 chr9 49202136 49202286 -74873886 - B2_Mm2 SINE B2 -34 161 3 3 960 205 279 34 59 chr9 49202486 49202604 -74873568 + L2b LINE L2 2659 2773 -646 3 960 269 329 75 80 chr9 49202691 49202990 -74873182 + L2b LINE L2 2965 3252 -123 3 960 224 342 0 27 chr9 49202990 49203065 -74873107 - ID4 SINE ID -1 82 10 3 960 454 250 45 38 chr9 49203095 49203228 -74872944 - B1F1 SINE Alu 0 149 16 3 960 268 388 22 33 chr9 49204174 49204358 -74871814 - MIRb SINE MIR -24 244 63 3 960 1290 235 47 73 chr9 49205018 49205441 -74870731 - MTE2a LTR MaLR -13 408 6 3 960 253 326 70 49 chr9 49207001 49207143 -74869029 - MER74B LTR ERVL -476 146 2 3 960 345 320 23 23 chr9 49207338 49207469 -74868703 + MT2A LTR ERVL 1 131 -402 3 960 1347 279 22 20 chr9 49207356 49207714 -74868458 + MTEa LTR MaLR 21 379 0 3 960 393 22 0 0 chr9 49208057 49208103 -74868069 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 960 270 295 160 70 chr9 49209723 49209967 -74866205 + Charlie22a DNA MER1_type 25 290 -201 3 960 583 305 54 33 chr9 49210838 49211079 -74865093 + MIRb SINE MIR 7 252 -16 3 960 437 348 43 32 chr9 49211680 49211867 -74864305 - MIRb SINE MIR -69 199 11 3 960 414 184 0 38 chr9 49213757 49213836 -74862336 + RSINE1 SINE B4 3 78 -87 3 960 450 0 0 0 chr9 49213872 49213922 -74862250 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 960 369 0 0 0 chr9 49213922 49213962 -74862210 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 960 212 311 55 47 chr9 49214149 49214277 -74861895 - MIRb SINE MIR -134 134 6 3 960 531 107 0 0 chr9 49217071 49217155 -74859017 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 960 210 222 0 0 chr9 49217267 49217321 -74858851 + GA-rich Low_complexity Low_complexity 2 55 0 3 960 927 27 0 0 chr9 49217321 49217431 -74858741 + (GA)n Simple_repeat Simple_repeat 1 110 0 3 960 188 351 0 66 chr9 49220162 49220223 -74855949 - MIRb SINE MIR -177 91 32 3 960 253 331 22 52 chr9 49220830 49220964 -74855208 - L2 LINE L2 -898 2521 2392 3 960 182 354 161 0 chr9 49221840 49221970 -74854202 - MER5B DNA MER1_type -2 176 26 3 960 503 31 0 15 chr9 49222494 49222560 -74853612 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 960 765 0 0 0 chr9 49225538 49225623 -74850549 + (TTCTC)n Simple_repeat Simple_repeat 1 85 0 3 960 1034 81 23 23 chr9 49225625 49225801 -74850371 + (TCCCC)n Simple_repeat Simple_repeat 1 176 0 3 960 663 48 0 0 chr9 49225805 49225888 -74850284 + (TTCTC)n Simple_repeat Simple_repeat 2 84 0 3 960 181 256 128 0 chr9 49228495 49228573 -74847599 + L2 LINE L2 2466 2553 -866 3 960 303 265 9 84 chr9 49228702 49228809 -74847363 + MIRb SINE MIR 56 154 -114 3 960 268 253 246 33 chr9 49229108 49229311 -74846861 - L2b LINE L2 -144 3231 2994 3 960 325 263 8 92 chr9 49229385 49229415 -74846757 + ID_B1 SINE B4 106 216 -8 3 960 736 62 0 40 chr9 49229415 49229504 -74846668 + B1_Mus2 SINE Alu 51 139 -8 3 960 218 32 32 0 chr9 49229504 49229535 -74846637 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 960 268 219 0 27 chr9 49230453 49230528 -74845644 - L1ME4a LINE L1 -7 6117 6045 3 960 307 219 31 0 chr9 49231231 49231295 -74844877 + MIRc SINE MIR 114 179 -89 3 960 536 291 7 33 chr9 49231845 49231998 -74844174 + B3A SINE B2 1 149 -49 3 960 199 349 17 56 chr9 49232057 49232236 -74843936 + L2a LINE L2 2946 3117 -309 3 960 287 257 71 0 chr9 49232452 49232522 -74843650 + L2a LINE L2 3259 3333 -93 3 960 221 167 67 9 chr9 49232679 49232735 -74843437 - L2a LINE L2 -6 3420 3325 3 960 195 326 131 18 chr9 49232876 49233248 -74842924 + L2b LINE L2 2659 3160 -215 3 960 184 375 87 0 chr9 49233337 49233441 -74842731 + L2b LINE L2 3243 3355 -20 3 960 315 0 0 0 chr9 49233465 49233500 -74842672 + (TGGA)n Simple_repeat Simple_repeat 4 38 0 3 960 769 245 39 0 chr9 49233708 49233742 -74842430 - RSINE1 SINE B4 0 165 126 3 960 297 0 0 0 chr9 49233742 49233775 -74842397 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 960 769 245 39 0 chr9 49233775 49233895 -74842277 - RSINE1 SINE B4 -40 125 6 3 960 384 22 0 0 chr9 49234004 49234049 -74842123 + (TGGGGG)n Simple_repeat Simple_repeat 4 48 0 3 960 445 183 9 9 chr9 49235914 49236019 -74840153 + G-rich Low_complexity Low_complexity 3 107 0 3 960 373 325 50 42 chr9 49236021 49236140 -74840032 - B1_Mur1 SINE Alu -28 121 2 3 960 227 204 28 178 chr9 49236056 49236163 -74840009 - MT2B2 LTR ERVL -346 238 148 3 960 989 292 65 28 chr9 49236209 49236868 -74839304 + L1MD2 LINE L1 5094 5778 -581 3 960 281 310 72 9 chr9 49236923 49237055 -74839117 + L1MD2 LINE L1 5883 6031 -211 3 960 879 218 113 39 chr9 49237144 49237373 -74838799 + MTEb LTR MaLR 111 356 -23 3 960 1453 362 102 94 chr9 49237398 49238621 -74837551 + MLT-int LTR MaLR 239 1483 -252 3 960 524 312 42 31 chr9 49238621 49238813 -74837359 - B3A SINE B2 0 198 5 3 960 1453 362 102 94 chr9 49238813 49238880 -74837292 + MLT-int LTR MaLR 1484 1540 -195 3 960 604 315 42 78 chr9 49239183 49239541 -74836631 - ORR1D2 LTR MaLR -19 351 7 3 960 339 282 46 38 chr9 49239605 49239744 -74836428 + MLT1A1 LTR MaLR 210 408 0 3 960 1759 194 43 23 chr9 49240491 49240839 -74835333 + ORR1B1 LTR MaLR 40 394 0 3 960 192 397 0 0 chr9 49241072 49241150 -74835022 + MIR SINE MIR 90 167 -95 3 960 2559 84 3 0 chr9 49241178 49241500 -74834672 + ORR1A2 LTR MaLR 5 327 0 3 960 3532 25 2 0 chr9 49242115 49242510 -74833662 + MTA_Mm LTR MaLR 1 396 0 3 960 402 21 0 0 chr9 49242552 49242599 -74833573 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 960 334 338 48 24 chr9 49243457 49243663 -74832509 - MIRb SINE MIR -8 260 50 3 960 306 0 0 0 chr9 49244340 49244374 -74831798 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 960 225 265 81 46 chr9 49245007 49245094 -74831078 - MIRc SINE MIR -91 177 88 3 960 234 0 0 0 chr9 49246428 49246454 -74829718 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 960 308 336 106 0 chr9 49247315 49247428 -74828744 + B1F1 SINE Alu 2 126 -21 3 960 262 300 0 12 chr9 49247433 49247514 -74828658 + GA-rich Low_complexity Low_complexity 2 81 0 3 960 180 158 0 0 chr9 49247520 49247558 -74828614 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 3 960 274 309 120 68 chr9 49247562 49247812 -74828360 + ORR1E LTR MaLR 1 263 -96 4 960 620 234 73 0 chr9 49248653 49248773 -74827399 + B1_Mur1 SINE Alu 1 129 -20 4 960 2322 179 5 3 chr9 49248773 49249160 -74827012 + ORR1B1 LTR MaLR 1 388 -6 4 960 189 0 0 0 chr9 49249310 49249331 -74826841 + (GGA)n Simple_repeat Simple_repeat 2 22 0 4 960 24 67 0 0 chr9 49251759 49251804 -74824368 + AT_rich Low_complexity Low_complexity 1 45 0 4 960 657 185 3 24 chr9 49251812 49252107 -74824065 + (TG)n Simple_repeat Simple_repeat 1 288 0 4 960 396 0 0 0 chr9 49252108 49252152 -74824020 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 960 1119 285 63 24 chr9 49255488 49255819 -74820353 - MER2 DNA MER2_type -1 344 1 4 960 683 330 119 25 chr9 49256353 49256841 -74819331 + L3 LINE CR1 3472 4005 -484 4 960 242 288 102 59 chr9 49257051 49257169 -74819003 - L2b LINE L2 -2 3373 3251 4 960 185 359 27 36 chr9 49257222 49257332 -74818840 - L2b LINE L2 -366 3021 2913 4 960 207 0 0 0 chr9 49257596 49257619 -74818553 + (T)n Simple_repeat Simple_repeat 1 23 0 4 960 207 0 0 0 chr9 49259677 49259700 -74816472 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 960 217 312 109 0 chr9 49259719 49259783 -74816389 - ID2 SINE ID -10 73 3 4 960 667 296 31 14 chr9 49259791 49259982 -74816190 - B3A SINE B2 -7 188 1 4 960 751 170 15 49 chr9 49262320 49262506 -74813666 + ORR1D1 LTR MaLR 1 136 -190 4 960 453 19 0 0 chr9 49262801 49262855 -74813317 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 960 294 95 0 0 chr9 49262914 49262956 -74813216 + (TCCCC)n Simple_repeat Simple_repeat 4 45 0 4 960 383 261 50 8 chr9 49262959 49263080 -74813092 - B4 SINE B4 -46 246 121 4 960 243 152 0 0 chr9 49263737 49263783 -74812389 + GA-rich Low_complexity Low_complexity 2 47 0 4 960 501 235 49 42 chr9 49264174 49264316 -74811856 + B1_Mur1 SINE Alu 1 143 -6 4 960 275 236 62 0 chr9 49265687 49265831 -74810341 + (TA)n Simple_repeat Simple_repeat 1 153 0 4 960 2449 93 12 12 chr9 49267429 49267756 -74808416 - ORR1A2 LTR MaLR 0 327 1 4 960 338 219 154 45 chr9 49267895 49268005 -74808167 + RSINE1 SINE B4 3 124 -41 4 960 361 363 70 0 chr9 49268847 49269004 -74807168 + MER5B DNA MER1_type 10 177 -1 4 960 452 253 21 73 chr9 49269142 49269334 -74806838 + RLTR42-int LTR ERVK 1189 1370 -4152 4 960 208 420 26 47 chr9 49270390 49270580 -74805592 - MIRb SINE MIR -31 237 52 4 960 256 269 0 0 chr9 49270633 49270685 -74805487 + ID4 SINE ID 31 82 -1 4 960 402 310 133 7 chr9 49273087 49273230 -74802942 + RSINE1 SINE B4 2 162 -3 4 960 250 205 0 24 chr9 49273242 49273327 -74802845 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 960 396 0 0 0 chr9 49273596 49273640 -74802532 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 960 434 266 0 44 chr9 49273714 49273828 -74802344 + PB1D10 SINE Alu 1 109 -8 4 960 485 204 0 6 chr9 49273909 49274082 -74802090 + GA-rich Low_complexity Low_complexity 1 172 0 4 960 274 208 104 47 chr9 49274724 49274830 -74801342 - MIRc SINE MIR -106 162 51 4 960 669 240 133 69 chr9 49275011 49275450 -74800722 + Lx7 LINE L1 5428 5904 -1792 4 960 765 194 0 0 chr9 49275473 49275648 -74800524 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 960 24 32 0 0 chr9 49275696 49275727 -74800445 + AT_rich Low_complexity Low_complexity 1 31 0 4 960 357 162 0 0 chr9 49275765 49275833 -74800339 + CT-rich Low_complexity Low_complexity 2 69 0 4 960 726 80 43 21 chr9 49276373 49276514 -74799658 + (TTTCC)n Simple_repeat Simple_repeat 2 145 0 4 960 441 0 0 0 chr9 49276843 49276892 -74799280 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 960 377 302 72 63 chr9 49277019 49277256 -74798916 - MamRep434 DNA TcMar -12 414 176 4 960 226 268 73 104 chr9 49277880 49277976 -74798196 - RMER19A LTR ERVK -267 470 378 4 960 180 143 0 0 chr9 49278768 49278810 -74797362 + (A)n Simple_repeat Simple_repeat 1 42 0 4 960 227 295 33 0 chr9 49279419 49279480 -74796692 + (CATG)n Simple_repeat Simple_repeat 1 63 0 4 960 240 35 0 0 chr9 49282213 49282242 -74793930 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 960 1065 145 0 0 chr9 49282242 49282421 -74793751 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 4 960 397 311 26 0 chr9 49282455 49282606 -74793566 - L1MEe LINE L1 -759 5414 5260 4 14 631 286 94 28 chr9 49282844 49283164 -74793008 - L1MC3 LINE L1 -543 7242 6902 4 961 529 243 170 21 chr9 49283401 49283683 -74792489 + L1MA8 LINE L1 5946 6269 -22 4 961 377 267 80 22 chr9 49283696 49283834 -74792338 - L1MEe LINE L1 -3772 2394 2249 4 961 348 263 157 120 chr9 49284518 49284734 -74791438 + MLT1B LTR MaLR 1 224 -166 4 961 22928 178 26 32 chr9 49284735 49290212 -74785960 + Lx4B LINE L1 1611 7048 -10 4 961 441 0 0 0 chr9 49290213 49290262 -74785910 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 961 699 291 16 16 chr9 49290705 49290897 -74785275 + B4A SINE B4 1 192 -100 4 961 264 319 71 0 chr9 49290890 49291003 -74785169 + MLT1B LTR MaLR 347 467 0 4 961 2102 104 0 55 chr9 49291109 49291436 -74784736 + ORR1A3 LTR MaLR 18 326 0 4 961 21 36 0 0 chr9 49292860 49292888 -74783284 + AT_rich Low_complexity Low_complexity 1 28 0 4 961 210 128 0 0 chr9 49293814 49293853 -74782319 + (TGGGGG)n Simple_repeat Simple_repeat 2 40 0 4 961 474 18 0 0 chr9 49295346 49295401 -74780771 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 961 473 214 78 0 chr9 49295420 49295523 -74780649 - B1F1 SINE Alu -29 120 10 4 961 236 234 123 15 chr9 49295467 49295532 -74780640 - B4A SINE B4 -135 157 86 4 961 255 368 50 45 chr9 49296080 49296282 -74779890 - L3b LINE CR1 -220 262 60 4 961 738 138 122 0 chr9 49297331 49297454 -74778718 - ORR1B1 LTR MaLR 0 394 257 4 961 400 231 59 17 chr9 49297423 49297542 -74778630 - ORR1B1 LTR MaLR -205 124 1 4 961 25 51 0 0 chr9 49299083 49299122 -74777050 + AT_rich Low_complexity Low_complexity 1 39 0 4 961 646 50 202 0 chr9 49299127 49299226 -74776946 + B1_Mus1 SINE Alu 30 148 0 4 961 200 69 16 79 chr9 49299226 49299289 -74776883 + A-rich Low_complexity Low_complexity 6 64 0 4 961 324 336 103 45 chr9 49299397 49299640 -74776532 + L1MD3 LINE L1 7302 7558 -437 4 961 360 298 152 35 chr9 49299649 49299965 -74776207 + L1MD3 LINE L1 7532 7884 -111 4 961 460 317 120 11 chr9 49300624 49300815 -74775357 - MLT1A0 LTR MaLR 0 365 154 4 961 1015 233 15 19 chr9 49301268 49301474 -74774698 + B3 SINE B2 1 205 -11 4 961 269 265 13 20 chr9 49301693 49301843 -74774329 + GA-rich Low_complexity Low_complexity 3 151 0 4 961 385 117 26 13 chr9 49302598 49302676 -74773496 + (CTGGGG)n Simple_repeat Simple_repeat 5 83 0 4 961 645 14 0 0 chr9 49302746 49302820 -74773352 + (CTGGGG)n Simple_repeat Simple_repeat 3 76 0 4 961 285 238 37 12 chr9 49303084 49303165 -74773007 - MIRc SINE MIR -126 142 60 4 961 243 358 0 31 chr9 49303175 49303273 -74772899 + L2b LINE L2 3236 3330 -45 4 961 235 358 61 18 chr9 49303798 49303963 -74772209 - L2b LINE L2 -22 3353 3182 4 961 2574 145 31 17 chr9 49304070 49304485 -74771687 - MTC LTR MaLR 0 421 1 4 961 832 239 172 68 chr9 49304886 49305033 -74771139 - MTE2a LTR MaLR -5 374 196 4 961 312 120 0 0 chr9 49305033 49305083 -74771089 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 961 832 239 172 68 chr9 49305083 49305272 -74770900 - MTE2a LTR MaLR -184 195 5 4 961 242 192 94 25 chr9 49305321 49305401 -74770771 + PB1 SINE Alu 8 99 -51 4 961 198 71 0 0 chr9 49305408 49305436 -74770736 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 4 961 479 350 103 46 chr9 49305638 49306315 -74769857 + L2a LINE L2 2387 3128 -298 4 961 586 286 52 37 chr9 49306476 49306745 -74769427 + MER63C DNA AcHobo 21 293 -637 4 961 288 0 0 0 chr9 49306796 49306828 -74769344 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 961 261 316 10 40 chr9 49306951 49307050 -74769122 + MER63C DNA AcHobo 541 636 -294 4 961 251 356 104 23 chr9 49307279 49307500 -74768672 + MT2A LTR ERVL 226 464 -69 4 961 241 281 0 15 chr9 49307513 49307578 -74768594 + GA-rich Low_complexity Low_complexity 2 65 0 4 961 420 280 53 7 chr9 49307618 49307769 -74768403 + MER63C DNA AcHobo 631 788 -142 4 961 473 250 45 18 chr9 49307860 49307970 -74768202 - MLT1I LTR MaLR -260 151 39 4 961 624 177 15 19 chr9 49308068 49308334 -74767838 + (TG)n Simple_repeat Simple_repeat 1 264 0 4 961 462 207 17 17 chr9 49308345 49308522 -74767650 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 961 310 282 133 31 chr9 49308873 49309001 -74767171 + MER96 DNA hAT 11 151 -24 4 961 468 0 0 0 chr9 49309587 49309639 -74766533 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 961 320 364 51 11 chr9 49309703 49309836 -74766336 - MIRc SINE MIR -129 139 2 4 961 581 257 0 97 chr9 49309908 49310063 -74766109 - B1F SINE Alu -2 147 8 4 961 390 91 0 0 chr9 49312175 49312230 -74763942 + (A)n Simple_repeat Simple_repeat 1 55 0 4 961 223 176 0 50 chr9 49312752 49312812 -74763360 + A-rich Low_complexity Low_complexity 2 58 0 4 961 660 13 0 0 chr9 49313093 49313170 -74763002 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 4 961 447 52 0 0 chr9 49313396 49313454 -74762718 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 961 296 263 13 0 chr9 49313810 49313886 -74762286 - MER5B DNA MER1_type -11 167 91 4 961 387 0 0 0 chr9 49316970 49317013 -74759159 + (CACCT)n Simple_repeat Simple_repeat 2 44 0 4 961 192 301 146 31 chr9 49317017 49317113 -74759059 + MIRb SINE MIR 125 231 -37 4 961 213 121 0 0 chr9 49317195 49317228 -74758944 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 961 465 19 0 0 chr9 49317230 49317284 -74758888 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 961 277 286 11 0 chr9 49319559 49319638 -74756534 - ID_B1 SINE B4 -123 169 84 4 961 410 309 29 22 chr9 49320264 49320403 -74755769 - B1F SINE Alu -5 144 5 4 961 215 317 77 90 chr9 49321269 49321425 -74754747 + L3 LINE CR1 4254 4407 -82 4 961 185 326 114 23 chr9 49321672 49321804 -74754368 - MER5A DNA MER1_type 0 189 46 5 961 594 41 0 0 chr9 49321932 49322005 -74754167 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 5 961 342 0 0 0 chr9 49322506 49322544 -74753628 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 961 414 0 0 0 chr9 49322782 49322828 -74753344 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 961 948 126 0 0 chr9 49325413 49325564 -74750608 + (TG)n Simple_repeat Simple_repeat 1 151 0 5 961 228 295 11 11 chr9 49325822 49325911 -74750261 + A-rich Low_complexity Low_complexity 5 93 0 5 961 318 310 51 76 chr9 49330071 49330268 -74745904 - MIRc SINE MIR -9 259 51 5 961 220 278 0 18 chr9 49331039 49331094 -74745078 + MIR SINE MIR 117 170 -92 5 961 861 29 0 0 chr9 49331495 49331599 -74744573 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 961 380 327 0 0 chr9 49333545 49333652 -74742520 + MER81 DNA AcHobo 1 107 -7 5 961 786 219 76 5 chr9 49335731 49335915 -74740257 - B3A SINE B2 0 198 2 5 961 454 222 212 15 chr9 49336663 49336800 -74739372 - B3 SINE B2 0 216 53 5 961 530 131 10 0 chr9 49341440 49341539 -74734633 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 961 183 129 0 0 chr9 49342041 49342072 -74734100 + (G)n Simple_repeat Simple_repeat 1 31 0 5 961 486 0 0 0 chr9 49342913 49342967 -74733205 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 961 387 0 0 0 chr9 49342967 49343009 -74733163 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 961 278 241 0 11 chr9 49343456 49343544 -74732628 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 961 21 36 0 0 chr9 49343581 49343609 -74732563 + AT_rich Low_complexity Low_complexity 1 28 0 5 961 1278 71 0 0 chr9 49343745 49343915 -74732257 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 5 961 358 203 80 13 chr9 49345656 49345731 -74730441 - B4A SINE B4 0 292 213 5 961 643 282 70 30 chr9 49345734 49345935 -74730237 - B3A SINE B2 0 216 8 5 961 632 291 70 13 chr9 49345932 49346162 -74730010 - B4A SINE B4 -48 244 2 5 961 225 65 0 0 chr9 49346751 49346782 -74729390 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 961 264 149 0 0 chr9 49347997 49348044 -74728128 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 5 961 253 313 0 0 chr9 49348057 49348124 -74728048 - ID2 SINE ID -15 68 2 5 961 427 224 26 70 chr9 49348131 49348246 -74727926 - B1F SINE Alu 0 149 40 5 961 351 0 0 0 chr9 49349248 49349287 -74726885 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 961 645 301 117 50 chr9 49351367 49351864 -74724308 + L1MB3 LINE L1 5651 6180 -3 5 961 686 285 20 25 chr9 49351896 49352094 -74724078 + B4A SINE B4 3 199 -93 5 961 363 23 0 0 chr9 49352197 49352241 -74723931 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 961 272 271 0 0 chr9 49352250 49352309 -74723863 + GA-rich Low_complexity Low_complexity 2 60 0 5 961 208 135 0 0 chr9 49355436 49355473 -74720699 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 5 961 809 273 89 19 chr9 49357530 49357799 -74718373 - B4A SINE B4 -4 288 1 5 961 255 125 0 0 chr9 49358287 49358327 -74717845 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 5 961 441 0 0 0 chr9 49359825 49359874 -74716298 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 961 231 245 0 19 chr9 49361278 49361332 -74714840 + L3 LINE CR1 3525 3577 -912 5 961 284 319 221 28 chr9 49361730 49362056 -74714116 + L3 LINE CR1 3723 4111 -378 5 961 993 141 0 6 chr9 49362056 49362592 -74713580 + (TG)n Simple_repeat Simple_repeat 1 532 0 5 961 182 256 117 85 chr9 49362682 49362776 -74713396 + L3 LINE CR1 4336 4432 -57 5 961 226 157 143 91 chr9 49365549 49365626 -74710546 + MT2B LTR ERVL 75 155 -446 5 961 338 159 14 0 chr9 49365764 49365833 -74710339 + GA-rich Low_complexity Low_complexity 1 70 0 5 961 243 231 175 25 chr9 49366742 49366822 -74709350 - B1_Mm SINE Alu -44 103 12 5 961 1164 232 12 92 chr9 49366948 49367294 -74708878 + ORR1E LTR MaLR 1 318 -41 5 961 333 0 0 0 chr9 49367294 49367331 -74708841 + (T)n Simple_repeat Simple_repeat 1 37 0 5 961 27 29 0 0 chr9 49367356 49367390 -74708782 + AT_rich Low_complexity Low_complexity 1 34 0 5 961 1514 234 46 20 chr9 49367611 49367960 -74708212 - ORR1D2 LTR MaLR 0 370 13 5 961 180 231 138 0 chr9 49368138 49368203 -74707969 + L4 LINE RTE 336 409 -1620 5 961 4154 183 36 36 chr9 49369275 49369386 -74706786 + RCHARR1 DNA MER1_type 3 106 -868 5 961 261 0 0 0 chr9 49369386 49369415 -74706757 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 961 4154 183 36 36 chr9 49369415 49370164 -74706008 + RCHARR1 DNA MER1_type 107 863 -111 5 961 214 276 17 0 chr9 49370400 49370458 -74705714 + MIR SINE MIR 130 188 -74 5 961 982 289 35 18 chr9 49371291 49371573 -74704599 + B4 SINE B4 2 288 -4 5 961 381 177 0 0 chr9 49371587 49371666 -74704506 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 961 196 331 138 71 chr9 49372163 49372849 -74703323 - L2b LINE L2 -17 3409 2665 5 961 222 138 52 0 chr9 49373981 49374039 -74702133 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 961 607 257 34 14 chr9 49375012 49375158 -74701014 - B1F1 SINE Alu 0 149 1 5 961 228 333 89 51 chr9 49379591 49379749 -74696423 - MIR3 SINE MIR -28 180 17 5 961 396 0 0 0 chr9 49381215 49381259 -74694913 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 961 621 264 91 66 chr9 49381262 49381505 -74694667 - B4 SINE B4 0 292 44 5 961 187 308 104 19 chr9 49381691 49381797 -74694375 - MIRc SINE MIR -110 158 44 5 961 259 290 58 36 chr9 49382835 49383000 -74693172 + MIR SINE MIR 44 221 -47 5 961 275 335 94 23 chr9 49383337 49383508 -74692664 + MIRb SINE MIR 26 208 -60 5 961 342 0 0 0 chr9 49383509 49383547 -74692625 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 961 252 0 0 0 chr9 49383547 49383574 -74692598 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 961 288 0 0 0 chr9 49383678 49383710 -74692462 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 961 231 36 0 0 chr9 49383710 49383737 -74692435 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 961 567 43 0 0 chr9 49383737 49383806 -74692366 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 961 528 320 49 51 chr9 49385249 49385522 -74690650 + B4A SINE B4 1 277 -15 5 961 425 79 19 47 chr9 49385583 49385689 -74690483 + (CA)n Simple_repeat Simple_repeat 2 104 0 5 961 791 284 66 100 chr9 49386728 49386752 -74689420 - B4A SINE B4 0 292 272 5 961 297 0 0 0 chr9 49386752 49386785 -74689387 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 961 387 0 0 0 chr9 49386785 49386827 -74689345 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 961 791 284 66 100 chr9 49386827 49387102 -74689070 - B4A SINE B4 -21 271 3 5 961 288 0 0 0 chr9 49387114 49387146 -74689026 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 5 961 286 259 79 2 chr9 49387765 49387872 -74688300 - MIR SINE MIR -15 253 121 5 961 328 267 85 9 chr9 49388326 49388432 -74687740 + PB1D10 SINE Alu 2 115 -2 5 961 198 174 0 0 chr9 49390186 49390232 -74685940 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 5 961 314 203 0 0 chr9 49390290 49390354 -74685818 + B1F SINE Alu 79 142 -7 5 961 387 258 59 42 chr9 49390965 49391109 -74685063 + L1_Mus4 LINE L1 5721 5887 -1586 5 961 184 122 49 0 chr9 49391117 49391158 -74685014 + CT-rich Low_complexity Low_complexity 1 43 0 5 961 805 301 109 19 chr9 49393116 49393319 -74682853 + MLT2B1 LTR ERVL 25 234 -286 5 961 342 0 0 0 chr9 49393319 49393357 -74682815 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 961 805 260 59 83 chr9 49393357 49393602 -74682570 + MLT2B1 LTR ERVL 235 534 -22 5 961 252 0 0 0 chr9 49397259 49397287 -74678885 + (CAAG)n Simple_repeat Simple_repeat 3 30 0 5 961 196 312 31 15 chr9 49397356 49397421 -74678751 - MIRc SINE MIR -121 147 82 5 961 512 310 92 11 chr9 49398899 49399160 -74677012 + MER2 DNA MER2_type 1 282 -63 5 961 325 319 78 7 chr9 49399263 49399405 -74676767 - MER63B DNA AcHobo 0 436 285 5 961 1296 149 114 0 chr9 49401690 49401945 -74674227 - MTC LTR MaLR -137 284 1 5 961 23 33 0 0 chr9 49402728 49402758 -74673414 + AT_rich Low_complexity Low_complexity 1 30 0 5 961 602 273 22 43 chr9 49404430 49404614 -74671558 - B3A SINE B2 -16 182 3 5 961 817 268 116 33 chr9 49405507 49405870 -74670302 - MLT1C LTR MaLR -74 393 1 5 961 250 341 57 14 chr9 49406045 49406185 -74669987 + MIR SINE MIR 36 181 -81 5 961 222 37 0 0 chr9 49406687 49406714 -74669458 + (TTTCC)n Simple_repeat Simple_repeat 3 29 0 5 961 226 254 69 14 chr9 49406910 49406982 -74669190 - MTEb LTR MaLR -10 369 294 5 961 473 0 18 0 chr9 49408009 49408066 -74668106 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 961 387 188 0 0 chr9 49408066 49408183 -74667989 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 961 213 39 0 0 chr9 49408475 49408501 -74667671 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 961 466 43 14 14 chr9 49409029 49409099 -74667073 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 961 1026 241 72 53 chr9 49409658 49410017 -74666155 + MTEb LTR MaLR 1 366 -13 5 961 276 100 0 0 chr9 49410614 49410654 -74665518 + (GGA)n Simple_repeat Simple_repeat 3 42 0 5 961 309 288 142 12 chr9 49411584 49411746 -74664426 - HAL1-3A_ME LINE L1 -392 2466 2284 5 961 785 299 60 78 chr9 49412806 49413190 -74662982 + MER21B LTR ERV1 380 756 -107 5 962 270 143 0 0 chr9 49416685 49416748 -74659424 + (A)n Simple_repeat Simple_repeat 1 63 0 5 962 540 190 42 25 chr9 49417377 49417496 -74658676 + RSINE1 SINE B4 16 136 -29 5 962 1147 286 42 48 chr9 49418766 49419269 -74656903 + Charlie1a DNA MER1_type 488 987 -468 5 962 588 14 0 0 chr9 49419491 49419560 -74656612 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 962 803 93 23 23 chr9 49419555 49419730 -74656442 + (CAGAGA)n Simple_repeat Simple_repeat 6 180 0 6 962 705 261 132 18 chr9 49419898 49420230 -74655942 + Charlie1a DNA MER1_type 1056 1425 -30 5 962 297 0 0 0 chr9 49421482 49421515 -74654657 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 6 962 4508 146 31 1 chr9 49421819 49422565 -74653607 - Lx LINE L1 -234 5649 4882 6 962 6876 100 46 16 chr9 49422561 49423561 -74652611 + Lx LINE L1 5622 6651 -3 6 962 1397 280 55 79 chr9 49423776 49424095 -74652077 + Ricksha_c DNA MuDR 360 686 -1362 6 962 823 156 21 7 chr9 49424095 49424237 -74651935 + B1_Mur3 SINE Alu 5 148 -1 6 962 1397 280 55 79 chr9 49424237 49424476 -74651696 + Ricksha_c DNA MuDR 687 905 -1143 6 962 198 346 54 36 chr9 49425185 49425296 -74650876 - MIRb SINE MIR -131 137 25 6 962 237 265 0 0 chr9 49426227 49426310 -74649862 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 6 962 987 228 19 23 chr9 49426427 49426687 -74649485 - B4A SINE B4 -33 259 1 6 962 358 323 62 0 chr9 49427222 49427352 -74648820 + B4A SINE B4 149 286 -6 6 962 1771 136 30 63 chr9 49427621 49427983 -74648189 + ORR1D1 LTR MaLR 3 352 -22 6 962 938 164 0 14 chr9 49429524 49429672 -74646500 - B1_Mur2 SINE Alu 0 149 4 6 962 235 292 30 40 chr9 49429966 49430066 -74646106 - Tigger16a DNA Tigger -69 864 766 6 962 374 57 19 0 chr9 49431446 49431499 -74644673 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 6 962 363 73 0 0 chr9 49432942 49432997 -74643175 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 962 294 311 23 85 chr9 49433219 49433349 -74642823 + ID_B1 SINE B4 84 205 -19 6 962 457 225 61 51 chr9 49434588 49434754 -74641418 + B4 SINE B4 1 171 -121 6 962 369 153 0 0 chr9 49434828 49434900 -74641272 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 962 184 278 37 0 chr9 49436306 49436360 -74639812 - MIR3 SINE MIR -23 185 130 6 962 4224 51 6 4 chr9 49436536 49437052 -74639120 + L1_Mus1 LINE L1 6050 6566 -1 6 962 224 137 0 19 chr9 49437210 49437262 -74638910 + CT-rich Low_complexity Low_complexity 2 52 0 6 962 180 0 0 0 chr9 49437798 49437818 -74638354 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 962 351 0 0 0 chr9 49438082 49438121 -74638051 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 962 423 0 0 0 chr9 49438121 49438167 -74638005 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 962 265 307 0 39 chr9 49438190 49438268 -74637904 - RSINE1 SINE B4 -36 129 55 6 962 216 0 0 0 chr9 49438396 49438420 -74637752 + (A)n Simple_repeat Simple_repeat 1 24 0 6 962 421 286 27 0 chr9 49438946 49439058 -74637114 + B1F1 SINE Alu 22 136 -13 6 962 236 319 59 17 chr9 49439640 49439758 -74636414 - PB1 SINE Alu -2 125 3 6 962 811 311 140 44 chr9 49439856 49440465 -74635707 + Charlie7 DNA MER1_type 17 683 -1929 6 962 269 281 36 72 chr9 49440614 49440752 -74635420 + L3 LINE CR1 3710 3842 -647 6 962 315 0 0 0 chr9 49441251 49441286 -74634886 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 962 303 104 0 0 chr9 49441286 49441333 -74634839 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 962 731 308 54 21 chr9 49441345 49441624 -74634548 - B4 SINE B4 -2 290 3 6 962 415 271 68 105 chr9 49441884 49442074 -74634098 - B3A SINE B2 -15 183 1 6 962 203 32 65 0 chr9 49443024 49443055 -74633117 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 962 411 236 0 0 chr9 49443121 49443282 -74632890 + (CA)n Simple_repeat Simple_repeat 2 162 0 6 962 240 137 0 0 chr9 49443311 49443362 -74632810 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 962 695 190 0 5 chr9 49443373 49443820 -74632352 + (CA)n Simple_repeat Simple_repeat 1 444 0 6 962 21 0 0 0 chr9 49444288 49444309 -74631863 + AT_rich Low_complexity Low_complexity 1 21 0 6 962 560 299 153 18 chr9 49446297 49446682 -74629490 + Lx9 LINE L1 7037 7473 -171 6 962 297 128 0 0 chr9 49446832 49446879 -74629293 + (TAA)n Simple_repeat Simple_repeat 2 48 0 6 962 1291 304 77 42 chr9 49447296 49448027 -74628145 + L1MA7 LINE L1 5536 6291 0 6 962 252 326 22 33 chr9 49449527 49449619 -74626553 - RSINE1 SINE B4 -4 161 71 6 962 252 0 0 0 chr9 49449666 49449694 -74626478 + (T)n Simple_repeat Simple_repeat 1 28 0 6 962 474 18 0 0 chr9 49451173 49451228 -74624944 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 962 288 0 0 0 chr9 49451228 49451260 -74624912 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 962 199 246 28 28 chr9 49453292 49453363 -74622809 + L2a LINE L2 3311 3381 -45 6 962 1012 298 39 7 chr9 49453751 49454032 -74622140 + B4 SINE B4 1 290 -2 6 962 223 365 0 12 chr9 49454935 49455021 -74621151 + (TG)n Simple_repeat Simple_repeat 1 85 0 6 962 461 274 18 77 chr9 49455041 49455211 -74620961 - B4A SINE B4 -48 244 85 6 962 2976 91 13 0 chr9 49455773 49456168 -74620004 - MTB LTR MaLR 0 400 1 6 962 216 0 0 0 chr9 49457233 49457257 -74618915 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 962 21 0 0 0 chr9 49457712 49457733 -74618439 + AT_rich Low_complexity Low_complexity 1 21 0 6 962 307 289 11 0 chr9 49457805 49457895 -74618277 - ID_B1 SINE B4 -131 93 3 6 962 1131 227 69 64 chr9 49459469 49459859 -74616313 - MTD LTR MaLR -15 404 13 6 962 522 278 45 8 chr9 49463087 49463221 -74612951 - B4A SINE B4 -27 265 127 6 962 205 0 0 158 chr9 49463224 49463325 -74612847 + (CTCTG)n Simple_repeat Simple_repeat 1 85 0 6 962 432 316 41 62 chr9 49463325 49463470 -74612702 - B4A SINE B4 -150 142 1 6 962 285 352 20 34 chr9 49464761 49464908 -74611264 - RSINE1 SINE B4 -19 146 2 6 962 793 268 17 69 chr9 49466110 49466399 -74609773 - B4 SINE B4 -16 276 3 6 962 880 243 123 17 chr9 49467847 49468140 -74608032 - MTEa LTR MaLR -39 340 17 6 962 357 82 0 0 chr9 49469372 49469421 -74606751 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 962 272 206 27 14 chr9 49469574 49469648 -74606524 + L1MB2 LINE L1 6097 6171 0 6 962 770 192 17 46 chr9 49470435 49470610 -74605562 - URR1A DNA MER1_type 0 226 57 6 962 485 327 0 18 chr9 49470660 49470825 -74605347 + RSINE1 SINE B4 4 165 0 6 962 198 0 0 0 chr9 49470983 49471005 -74605167 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 6 962 207 191 0 0 chr9 49471942 49471989 -74604183 + A-rich Low_complexity Low_complexity 3 49 0 6 962 294 106 0 0 chr9 49472655 49472702 -74603470 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 962 567 78 0 0 chr9 49472750 49472827 -74603345 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 962 273 57 0 0 chr9 49472827 49472861 -74603311 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 962 2905 56 72 11 chr9 49474169 49474546 -74601626 + MTB LTR MaLR 1 400 0 6 962 831 201 0 0 chr9 49474582 49474756 -74601416 + CT-rich Low_complexity Low_complexity 3 176 0 6 962 265 390 0 33 chr9 49474834 49474985 -74601187 + MIRb SINE MIR 52 197 -71 6 962 769 236 0 42 chr9 49475228 49475418 -74600754 + B3A SINE B2 1 182 -16 6 962 237 65 0 0 chr9 49476536 49476567 -74599605 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 6 962 702 325 104 13 chr9 49476699 49477082 -74599090 - L1MB7 LINE L1 -43 6141 5724 6 962 423 0 0 0 chr9 49479917 49479964 -74596208 + (TTTC)n Simple_repeat Simple_repeat 4 50 0 6 962 858 198 0 0 chr9 49479972 49480149 -74596023 + (TA)n Simple_repeat Simple_repeat 1 177 0 6 962 481 256 60 55 chr9 49481595 49481777 -74594395 - B3A SINE B2 -14 184 2 6 962 240 35 0 0 chr9 49482049 49482078 -74594094 + (A)n Simple_repeat Simple_repeat 1 29 0 6 962 715 236 15 53 chr9 49484881 49485087 -74591085 - B3A SINE B2 0 198 1 6 962 324 181 0 0 chr9 49485599 49485682 -74590490 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 962 298 279 75 75 chr9 49486285 49486405 -74589767 - ID_B1 SINE B4 -6 218 99 6 962 505 210 167 0 chr9 49488326 49488482 -74587690 - B3A SINE B2 -36 180 1 6 962 282 56 0 0 chr9 49488661 49488697 -74587475 + (CACCAT)n Simple_repeat Simple_repeat 3 38 0 6 962 268 343 29 22 chr9 49489074 49489211 -74586961 - B1F1 SINE Alu -11 138 1 6 962 444 252 139 19 chr9 49489458 49489616 -74586556 + ID_B1 SINE B4 1 177 -47 6 962 216 135 0 0 chr9 49489646 49489683 -74586489 + (TTA)n Simple_repeat Simple_repeat 3 39 0 6 962 526 206 53 60 chr9 49489704 49489854 -74586318 + B1F1 SINE Alu 1 149 0 6 962 236 243 26 39 chr9 49490509 49490586 -74585586 + MIRc SINE MIR 77 152 -116 6 962 360 0 0 0 chr9 49490594 49490634 -74585538 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 962 192 77 0 0 chr9 49490786 49490812 -74585360 + (CATG)n Simple_repeat Simple_repeat 1 26 0 6 962 243 228 0 0 chr9 49490817 49490909 -74585263 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 962 235 211 17 34 chr9 49490929 49490988 -74585184 - B4A SINE B4 -18 274 217 6 962 233 316 38 38 chr9 49491022 49491191 -74584981 - B3 SINE B2 -13 203 7 6 962 616 278 41 78 chr9 49491185 49491427 -74584745 - B4A SINE B4 -59 233 1 6 962 253 386 0 0 chr9 49493644 49493758 -74582414 - PB1D10 SINE Alu -1 116 3 6 962 562 327 47 67 chr9 49494947 49495245 -74580927 + B4A SINE B4 1 292 0 6 962 1348 87 27 0 chr9 49495352 49495535 -74580637 + B2_Mm2 SINE B2 1 188 -7 6 962 261 0 0 0 chr9 49496821 49496850 -74579322 + (T)n Simple_repeat Simple_repeat 1 29 0 6 962 180 319 14 14 chr9 49497631 49497704 -74578468 - MIR SINE MIR -1 261 189 6 962 255 352 17 90 chr9 49497880 49498058 -74578114 - MER104 DNA Tc2 -3 178 14 6 962 297 51 0 0 chr9 49500788 49500827 -74575345 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 962 204 83 41 20 chr9 49501793 49501842 -74574330 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 962 180 0 0 0 chr9 49504305 49504325 -74571847 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 962 411 293 106 7 chr9 49504576 49504717 -74571455 - B3A SINE B2 -30 168 14 4 962 403 360 26 31 chr9 49505439 49505631 -74570541 - Lx8 LINE L1 -249 7224 7034 5 962 201 154 0 0 chr9 49506334 49506373 -74569799 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 6 962 310 225 56 0 chr9 49506373 49506444 -74569728 - B1F SINE Alu -1 148 74 7 962 565 316 65 98 chr9 49508260 49508537 -74567635 - B4A SINE B4 -3 289 22 8 962 260 300 22 11 chr9 49508927 49509018 -74567154 + L2c LINE L2 3296 3387 0 9 962 362 267 126 160 chr9 49509542 49509638 -74566534 + B4 SINE B4 1 86 -206 1 962 213 39 0 0 chr9 49509638 49509664 -74566508 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 1 962 362 267 126 160 chr9 49509664 49509763 -74566409 + B4 SINE B4 87 201 -91 1 962 369 0 0 0 chr9 49509763 49509804 -74566368 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 962 362 267 126 160 chr9 49509804 49509901 -74566271 + B4 SINE B4 202 284 -8 1 962 537 16 0 0 chr9 49510903 49510965 -74565207 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 962 734 298 110 20 chr9 49512024 49512394 -74563778 - L1MC3 LINE L1 -52 7733 7328 1 962 870 251 86 101 chr9 49512394 49512779 -74563393 + MTEa LTR MaLR 1 379 0 1 962 734 298 110 20 chr9 49512779 49512799 -74563373 - L1MC3 LINE L1 -458 7327 7308 1 962 492 296 153 15 chr9 49512942 49513144 -74563028 - L1MC3 LINE L1 -990 6795 6566 1 962 259 344 78 0 chr9 49514006 49514160 -74562012 + L1MA9 LINE L1 5976 6141 -171 1 962 254 253 31 10 chr9 49514160 49514256 -74561916 - L1MA7 LINE L1 -1 6290 6193 1 962 1491 249 14 35 chr9 49515170 49515541 -74560631 - MTE2b LTR MaLR -14 365 3 1 962 1078 145 8 5 chr9 49515609 49515846 -74560326 + MTC LTR MaLR 94 421 0 1 962 483 301 17 79 chr9 49516731 49517029 -74559143 - MLT1E1A LTR MaLR 0 680 286 2 962 346 237 114 41 chr9 49517152 49517282 -74558890 + B1F1 SINE Alu 1 127 0 2 962 396 239 16 64 chr9 49519428 49519553 -74556619 + L1M5 LINE L1 5545 5663 -461 2 962 765 271 29 14 chr9 49519776 49519986 -74556186 + B3 SINE B2 4 216 0 2 962 1250 230 140 16 chr9 49520203 49520574 -74555598 - MTD LTR MaLR -2 417 1 2 962 212 167 24 0 chr9 49521807 49521849 -74554323 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 2 962 552 128 43 0 chr9 49521908 49522025 -74554147 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 2 962 212 103 51 0 chr9 49522027 49522066 -74554106 + CT-rich Low_complexity Low_complexity 4 44 0 2 962 266 244 25 13 chr9 49522094 49522173 -74553999 + CT-rich Low_complexity Low_complexity 3 82 0 2 962 312 70 0 0 chr9 49522174 49522217 -74553955 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 2 962 266 322 140 5 chr9 49522464 49522664 -74553508 + MIR SINE MIR 21 247 -15 2 962 273 29 0 0 chr9 49523678 49523712 -74552460 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 962 555 16 0 0 chr9 49523712 49523775 -74552397 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 962 321 254 0 0 chr9 49523811 49524071 -74552101 + (TG)n Simple_repeat Simple_repeat 1 260 0 3 962 2299 135 26 26 chr9 49524684 49525064 -74551108 + Lx4A LINE L1 6667 7046 -12 3 962 180 0 0 0 chr9 49525064 49525084 -74551088 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 962 846 29 0 0 chr9 49525084 49525188 -74550984 + (GA)n Simple_repeat Simple_repeat 1 105 0 3 962 378 0 0 0 chr9 49525457 49525499 -74550673 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 962 355 311 33 0 chr9 49527803 49527925 -74548247 + MER58A DNA MER1_type 2 127 -97 3 962 405 288 0 18 chr9 49527990 49528103 -74548069 - PB1D10 SINE Alu -6 111 1 3 962 586 263 115 28 chr9 49528207 49528493 -74547679 + MER33 DNA MER1_type 6 316 -8 3 962 274 327 96 25 chr9 49528879 49529036 -74547136 + B4A SINE B4 1 168 -124 4 962 420 20 0 0 chr9 49529239 49529288 -74546884 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 962 414 0 0 0 chr9 49529288 49529333 -74546839 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 962 223 49 49 0 chr9 49529344 49529385 -74546787 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 962 216 182 0 0 chr9 49529947 49529991 -74546181 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 962 390 331 15 8 chr9 49530413 49530544 -74545628 - B4A SINE B4 -81 211 80 4 962 397 217 10 52 chr9 49532225 49532322 -74543850 - B1F SINE Alu -56 93 1 4 962 2543 281 74 14 chr9 49532462 49533236 -74542936 + Lx8 LINE L1 6112 6931 -542 4 962 1192 274 91 18 chr9 49533246 49533640 -74542532 + Lx8 LINE L1 7047 7469 -4 4 962 369 0 0 0 chr9 49535082 49535123 -74541049 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 962 405 0 0 0 chr9 49535123 49535167 -74541005 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 962 1018 261 118 25 chr9 49537680 49538077 -74538095 - MER82 DNA MER2_type -108 545 112 5 962 290 26 0 25 chr9 49538118 49538158 -74538014 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 962 597 279 15 0 chr9 49539290 49539426 -74536746 + B1F1 SINE Alu 1 138 -11 5 962 816 40 0 0 chr9 49541270 49541370 -74534802 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 962 450 0 0 0 chr9 49541370 49541419 -74534753 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 962 519 17 0 0 chr9 49541726 49541786 -74534386 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 962 1004 288 30 33 chr9 49542332 49542634 -74533538 + MTEa LTR MaLR 2 302 -77 5 962 531 101 0 0 chr9 49543358 49543437 -74532735 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 5 962 526 276 110 69 chr9 49543526 49543744 -74532428 + MTEa LTR MaLR 35 261 -118 5 963 331 302 61 61 chr9 49545885 49546065 -74530107 + MLT1J LTR MaLR 188 367 -145 5 963 226 312 26 0 chr9 49547760 49547837 -74528335 + ID4 SINE ID 2 80 -3 6 963 1084 246 75 24 chr9 49549039 49549414 -74526758 - L1MA4 LINE L1 -376 5924 5531 6 963 315 0 0 0 chr9 49550076 49550111 -74526061 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 963 342 0 0 0 chr9 49550111 49550148 -74526024 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 963 255 192 0 0 chr9 49550153 49550226 -74525946 + (CAGA)n Simple_repeat Simple_repeat 4 76 0 6 963 225 265 0 0 chr9 49550713 49550762 -74525410 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 963 485 339 33 20 chr9 49551580 49551824 -74524348 + B4A SINE B4 45 291 -1 6 963 435 167 0 0 chr9 49551852 49551942 -74524230 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 963 293 302 59 40 chr9 49552492 49552651 -74523521 + MIRb SINE MIR 104 262 0 6 963 21 0 0 0 chr9 49552760 49552781 -74523391 + AT_rich Low_complexity Low_complexity 1 21 0 6 963 204 67 0 0 chr9 49554683 49554713 -74521459 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 7 963 287 253 13 0 chr9 49554796 49554875 -74521297 - L1MC4 LINE L1 -160 7882 7803 7 963 207 100 0 0 chr9 49554915 49554945 -74521227 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 7 963 335 283 20 80 chr9 49555113 49555263 -74520909 + MLT1C LTR MaLR 327 467 0 7 963 311 237 99 80 chr9 49556184 49556335 -74519837 - MamRep434 DNA TcMar -55 371 218 7 963 4547 42 2 9 chr9 49557477 49558002 -74518170 - L1Md_F3 LINE L1 -1 6583 6063 7 963 1733 119 66 31 chr9 49558797 49559084 -74517088 + Lx2 LINE L1 6695 6991 -6 7 963 407 304 30 42 chr9 49559507 49559675 -74516497 - Kanga1b DNA Tc2 -579 200 35 7 963 758 127 8 0 chr9 49561470 49561596 -74514576 + (GGA)n Simple_repeat Simple_repeat 3 129 0 7 963 23 33 0 0 chr9 49561631 49561661 -74514511 + AT_rich Low_complexity Low_complexity 1 30 0 7 963 717 313 200 18 chr9 49562635 49563084 -74513088 + MLT1K LTR MaLR 65 595 0 8 963 387 0 0 0 chr9 49563645 49563688 -74512484 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 963 393 103 0 0 chr9 49563889 49563957 -74512215 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 963 434 259 116 21 chr9 49564336 49564525 -74511647 + L2a LINE L2 3210 3416 -10 8 963 381 70 0 0 chr9 49564529 49564586 -74511586 + (A)n Simple_repeat Simple_repeat 1 57 0 8 963 504 48 0 0 chr9 49564674 49564737 -74511435 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 963 185 0 40 0 chr9 49565196 49565221 -74510951 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 8 963 285 128 0 0 chr9 49565714 49565761 -74510411 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 8 963 488 292 79 21 chr9 49565766 49565955 -74510217 - B3 SINE B2 -14 202 3 8 963 180 0 0 0 chr9 49566551 49566571 -74509601 + (T)n Simple_repeat Simple_repeat 1 20 0 8 963 626 191 7 0 chr9 49568322 49568458 -74507714 + (TA)n Simple_repeat Simple_repeat 1 137 0 9 963 287 299 72 22 chr9 49570247 49570469 -74505703 + HAL1 LINE L1 1406 1638 -869 9 963 630 150 0 0 chr9 49570937 49571057 -74505115 + (TA)n Simple_repeat Simple_repeat 1 120 0 9 963 276 213 107 0 chr9 49571078 49571153 -74505019 - RMER12 LTR ERVK -490 832 750 9 963 514 297 25 76 chr9 49571894 49572091 -74504081 + B3A SINE B2 1 187 -11 9 963 374 281 95 17 chr9 49572109 49572225 -74503947 + B1F2 SINE Alu 18 142 -7 9 963 194 231 67 87 chr9 49572726 49572830 -74503342 + MIR3 SINE MIR 84 185 -23 9 963 322 303 185 21 chr9 49573270 49573459 -74502713 - L3 LINE CR1 -740 3749 3530 9 963 423 347 65 10 chr9 49573504 49573705 -74502467 + L1M3a LINE L1 410 621 -5682 9 963 207 0 0 0 chr9 49574025 49574048 -74502124 + (A)n Simple_repeat Simple_repeat 1 23 0 9 963 277 295 16 32 chr9 49574193 49574319 -74501853 + L1M3a LINE L1 1052 1175 -5128 9 963 286 252 82 64 chr9 49574450 49574560 -74501612 + PB1D10 SINE Alu 6 117 0 1 963 275 338 80 28 chr9 49574852 49575138 -74501034 + L1M3a LINE L1 1461 1761 -4623 9 963 1216 292 46 29 chr9 49575317 49576061 -74500111 + L1M3a LINE L1 2030 2792 -3587 9 963 672 239 77 48 chr9 49576076 49576283 -74499889 + B3A SINE B2 3 215 -1 1 963 1791 283 124 7 chr9 49576294 49577188 -74498984 + L1M3a LINE L1 2802 3800 -2579 9 963 1729 167 35 119 chr9 49577211 49577606 -74498566 - ORR1D1 LTR MaLR -12 362 1 1 963 568 230 28 33 chr9 49577635 49577815 -74498357 + L1M3a LINE L1 3831 4009 -2367 9 963 1464 279 47 65 chr9 49577940 49578649 -74497523 + L1M3a LINE L1 3940 4635 -1741 9 963 754 255 96 28 chr9 49578733 49579159 -74497013 + L1M3a LINE L1 4617 5096 -1280 9 963 206 160 0 20 chr9 49579167 49579218 -74496954 + GA-rich Low_complexity Low_complexity 1 50 0 1 963 1029 96 6 11 chr9 49579219 49579399 -74496773 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 963 24 0 0 0 chr9 49580150 49580174 -74495998 + AT_rich Low_complexity Low_complexity 1 24 0 1 963 341 268 101 16 chr9 49580318 49580447 -74495725 - RSINE1 SINE B4 -25 140 1 1 963 206 125 21 0 chr9 49580789 49580837 -74495335 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1 963 446 271 34 8 chr9 49582298 49582417 -74493755 + B1F SINE Alu 7 128 -21 1 963 392 289 196 37 chr9 49582875 49583209 -74492963 - L1MB7 LINE L1 -324 5860 5466 1 963 407 19 19 0 chr9 49583209 49583261 -74492911 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1 963 392 289 196 37 chr9 49583261 49583335 -74492837 - L1MB7 LINE L1 -719 5465 5387 1 963 355 252 83 54 chr9 49583341 49583509 -74492663 - L1MB7 LINE L1 -2081 4065 3893 1 963 287 164 0 18 chr9 49586296 49586352 -74489820 - ORR1B2 LTR MaLR 0 367 313 1 963 3997 193 58 11 chr9 49586342 49587222 -74488950 - ORR1B2-int LTR MaLR -588 921 1 1 963 2234 122 67 39 chr9 49587222 49587579 -74488593 - ORR1B2 LTR MaLR 0 367 1 1 963 577 38 25 0 chr9 49587616 49587696 -74488476 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 963 561 261 29 87 chr9 49587758 49587930 -74488242 - B4A SINE B4 -130 162 1 1 963 321 225 225 0 chr9 49588717 49588797 -74487375 + RSINE1 SINE B4 5 102 -63 1 963 459 78 0 0 chr9 49590168 49590232 -74485940 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 963 573 150 0 0 chr9 49590937 49591037 -74485135 + (GA)n Simple_repeat Simple_repeat 2 101 0 1 963 378 0 0 0 chr9 49591037 49591079 -74485093 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 1 963 311 347 50 9 chr9 49591079 49591297 -74484875 + HAL1 LINE L1 1243 1469 -1038 1 963 242 260 39 20 chr9 49591399 49591501 -74484671 + HAL1 LINE L1 1483 1586 -921 1 963 539 333 84 29 chr9 49591605 49591934 -74484238 + HAL1 LINE L1 1956 2308 -199 1 963 2341 98 3 110 chr9 49591934 49592299 -74483873 - ORR1A3 LTR MaLR 0 326 1 1 963 539 333 84 29 chr9 49592299 49592492 -74483680 + HAL1 LINE L1 2309 2506 -1 1 963 1443 229 62 39 chr9 49592624 49593011 -74483161 - MTD LTR MaLR -14 405 10 1 963 602 316 179 16 chr9 49593569 49593887 -74482285 - Tigger15a DNA TcMar -343 372 3 1 963 897 292 44 52 chr9 49594081 49594352 -74481820 - B4A SINE B4 -21 271 3 1 963 452 281 111 0 chr9 49594608 49594743 -74481429 - MIRb SINE MIR -26 242 93 1 963 563 236 9 0 chr9 49595076 49595186 -74480986 + PB1D10 SINE Alu 2 112 -5 1 963 708 74 0 0 chr9 49595187 49595282 -74480890 + (GAAA)n Simple_repeat Simple_repeat 1 95 0 1 963 255 182 73 0 chr9 49595284 49595339 -74480833 + GA-rich Low_complexity Low_complexity 1 59 0 1 963 647 274 6 23 chr9 49595339 49595511 -74480661 + B3 SINE B2 48 216 0 1 963 411 21 0 0 chr9 49596126 49596174 -74479998 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 963 235 209 44 15 chr9 49596649 49596717 -74479455 + CT-rich Low_complexity Low_complexity 3 72 0 1 963 369 0 0 0 chr9 49596944 49596985 -74479187 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 963 349 222 0 27 chr9 49597319 49597393 -74478779 + B1F SINE Alu 70 141 -8 1 963 686 34 11 0 chr9 49597686 49597775 -74478397 + (TC)n Simple_repeat Simple_repeat 2 91 0 1 963 1200 78 0 0 chr9 49597776 49597917 -74478255 - B1_Mus2 SINE Alu -6 141 1 1 963 198 387 73 0 chr9 49597970 49598094 -74478078 - MIRc SINE MIR -129 139 7 1 963 233 29 29 0 chr9 49598209 49598243 -74477929 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 963 396 0 0 0 chr9 49598299 49598343 -74477829 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 963 441 0 0 0 chr9 49598343 49598391 -74477781 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 963 283 225 12 59 chr9 49600376 49600461 -74475711 + Arthur1B DNA Tip100 65 145 -1080 1 963 267 152 0 0 chr9 49602565 49602611 -74473561 + A-rich Low_complexity Low_complexity 1 46 0 1 963 430 214 14 0 chr9 49603062 49603132 -74473040 - RSINE1 SINE B4 -30 135 65 1 963 246 359 82 22 chr9 49603493 49603505 -74472667 + B4A SINE B4 78 145 -147 1 963 416 246 39 21 chr9 49603505 49603617 -74472555 + B1F SINE Alu 6 118 -30 1 963 28 0 0 0 chr9 49606750 49606778 -74469394 + AT_rich Low_complexity Low_complexity 1 28 0 1 963 801 184 0 0 chr9 49607485 49607643 -74468529 + CT-rich Low_complexity Low_complexity 6 163 0 1 963 243 0 0 0 chr9 49608519 49608546 -74467626 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 963 702 34 0 0 chr9 49609299 49609388 -74466784 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 963 186 283 62 52 chr9 49609732 49609829 -74466343 - L2c LINE L2 -94 3293 3196 1 963 265 301 41 0 chr9 49610457 49610530 -74465642 - ID4 SINE ID 0 83 8 1 963 375 283 16 40 chr9 49611161 49611286 -74464886 + MER91B DNA Tip100 29 150 -40 1 963 1036 261 98 48 chr9 49611702 49612262 -74463910 - L1MB3 LINE L1 -63 6120 5533 1 963 325 283 40 51 chr9 49612454 49612629 -74463543 - L1M4 LINE L1 -710 5468 5296 1 963 378 107 0 0 chr9 49612631 49612687 -74463485 + (T)n Simple_repeat Simple_repeat 1 56 0 1 963 363 308 76 33 chr9 49612687 49612962 -74463210 - L1M4 LINE L1 -837 5309 5023 1 963 460 108 121 0 chr9 49613042 49613150 -74463022 - L1Md_F2 LINE L1 0 6582 6470 1 963 307 331 6 13 chr9 49613185 49613344 -74462828 - L1M4 LINE L1 -1402 4738 4581 1 963 21 0 0 0 chr9 49613656 49613677 -74462495 + AT_rich Low_complexity Low_complexity 1 21 0 1 963 1750 193 16 22 chr9 49613823 49614107 -74462065 - ORR1D1 LTR MaLR 0 374 89 1 963 2111 138 56 11 chr9 49614107 49614480 -74461692 + ORR1B1 LTR MaLR 5 394 0 1 963 1750 193 16 22 chr9 49614480 49614565 -74461607 - ORR1D1 LTR MaLR -286 88 7 1 963 1337 87 16 16 chr9 49614967 49615153 -74461019 - B2_Mm2 SINE B2 -9 186 1 1 963 2278 115 6 0 chr9 49615153 49615474 -74460698 - ORR1A2 LTR MaLR -4 323 1 1 963 248 343 34 38 chr9 49615764 49616003 -74460169 - L2 LINE L2 -512 2907 2670 1 963 184 280 72 109 chr9 49616077 49616342 -74459830 - L2 LINE L2 -940 2479 2225 1 963 733 239 0 12 chr9 49618873 49619038 -74457134 + RSINE1 SINE B4 3 165 0 1 963 570 287 59 45 chr9 49619542 49619624 -74456548 + B4 SINE B4 1 82 -210 1 963 234 0 0 0 chr9 49619624 49619650 -74456522 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 963 570 287 59 45 chr9 49619650 49619855 -74456317 + B4 SINE B4 83 291 -1 1 963 201 147 0 0 chr9 49619881 49619915 -74456257 + (GGAGA)n Simple_repeat Simple_repeat 2 35 0 1 963 8190 32 1 4 chr9 49619998 49621602 -74454570 - L1Md_F2 LINE L1 -3 6579 4981 1 963 284 323 83 15 chr9 49621647 49621779 -74454393 - MLT1I LTR MaLR -270 141 1 1 963 560 14 0 14 chr9 49622568 49622638 -74453534 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 963 885 65 62 0 chr9 49623248 49623590 -74452582 + (TAGA)n Simple_repeat Simple_repeat 1 363 0 1 963 228 323 65 102 chr9 49624092 49624444 -74451728 - L2b LINE L2 0 3375 3037 1 963 266 258 0 0 chr9 49624530 49624592 -74451580 - MIR3 SINE MIR -27 181 120 1 963 325 289 42 14 chr9 49624819 49624963 -74451209 + MIR SINE MIR 63 210 -52 1 963 243 0 0 0 chr9 49625517 49625544 -74450628 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 963 250 166 47 115 chr9 49625715 49625906 -74450266 + (CTATA)n Simple_repeat Simple_repeat 1 178 0 1 963 180 0 0 0 chr9 49626362 49626382 -74449790 + (CCA)n Simple_repeat Simple_repeat 2 21 0 1 963 818 233 87 40 chr9 49627454 49627731 -74448441 - B4 SINE B4 -2 290 1 1 963 543 53 0 0 chr9 49628478 49628553 -74447619 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 963 768 63 0 0 chr9 49628595 49628706 -74447466 + (CA)n Simple_repeat Simple_repeat 2 112 0 1 963 336 24 0 0 chr9 49628748 49628789 -74447383 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 963 486 46 0 0 chr9 49628831 49628896 -74447276 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 963 302 71 0 0 chr9 49628961 49629003 -74447169 + HAL1-3A_ME LINE L1 1977 2018 -840 1 963 336 24 0 0 chr9 49629059 49629100 -74447072 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 963 357 43 0 0 chr9 49629142 49629189 -74446983 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 963 501 47 0 0 chr9 49629231 49629295 -74446877 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 963 186 71 0 0 chr9 49629336 49629364 -74446808 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 963 315 0 0 0 chr9 49629365 49629402 -74446770 + HAL1-3A_ME LINE L1 1977 2013 -845 1 963 474 151 7 52 chr9 49629442 49629596 -74446576 + (CA)n Simple_repeat Simple_repeat 2 148 0 1 963 373 194 78 97 chr9 49629641 49629744 -74446428 + PB1D10 SINE Alu 8 108 -9 1 963 433 312 32 13 chr9 49629811 49629967 -74446205 + B4 SINE B4 122 280 -12 1 963 378 42 0 0 chr9 49630593 49630641 -74445531 + (TCCCC)n Simple_repeat Simple_repeat 2 49 0 1 963 843 196 0 0 chr9 49630881 49631019 -74445153 + B1_Mur3 SINE Alu 2 139 -10 1 963 378 0 0 0 chr9 49631056 49631098 -74445074 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 1 963 227 323 16 0 chr9 49631099 49631161 -74445011 - B1_Mus1 SINE Alu -70 78 16 1 963 392 283 49 59 chr9 49631348 49631551 -74444621 + L1ME1 LINE L1 5377 5577 -663 1 963 576 321 62 43 chr9 49631946 49632385 -74443787 + L1ME1 LINE L1 5730 6176 -3 1 963 443 333 70 45 chr9 49633072 49633512 -74442660 - L1ME1 LINE L1 -76 6103 5653 1 963 655 311 18 43 chr9 49633530 49633861 -74442311 - L1ME1 LINE L1 -598 5581 5254 1 963 881 65 0 0 chr9 49633973 49634080 -74442092 - U6 snRNA snRNA 0 107 1 1 963 526 235 9 0 chr9 49634082 49634197 -74441975 - ID_B1 SINE B4 0 224 109 1 963 28 0 0 0 chr9 49634360 49634388 -74441784 + AT_rich Low_complexity Low_complexity 1 28 0 1 963 2132 158 3 13 chr9 49634544 49634772 -74441400 + RLTR14 LTR ERV1 7 233 -149 1 963 225 0 0 0 chr9 49634772 49634797 -74441375 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1 963 2132 158 3 13 chr9 49634797 49634947 -74441225 + RLTR14 LTR ERV1 234 381 -1 1 963 414 361 91 7 chr9 49635015 49635291 -74440881 - Lx8 LINE L1 -236 7237 6939 1 963 551 15 0 14 chr9 49635756 49635825 -74440347 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 963 352 258 95 16 chr9 49636211 49636337 -74439835 - B3A SINE B2 -36 162 27 1 963 552 315 24 18 chr9 49638645 49638810 -74437362 + B4A SINE B4 4 169 -123 1 963 353 232 9 116 chr9 49638860 49638972 -74437200 - B4A SINE B4 -8 284 185 1 963 294 29 0 0 chr9 49639199 49639234 -74436938 + (TATG)n Simple_repeat Simple_repeat 1 35 0 1 963 312 284 22 11 chr9 49640222 49640400 -74435772 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 963 313 300 6 12 chr9 49640427 49640569 -74435603 + (CA)n Simple_repeat Simple_repeat 1 141 0 1 963 1257 214 172 27 chr9 49640569 49640935 -74435237 + MTD LTR MaLR 1 419 0 2 963 313 300 6 12 chr9 49640935 49640954 -74435218 + (CA)n Simple_repeat Simple_repeat 2 20 0 2 963 184 307 100 22 chr9 49641002 49641092 -74435080 + MIR SINE MIR 72 168 -94 2 963 306 0 0 0 chr9 49641953 49641987 -74434185 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 963 245 318 89 45 chr9 49642018 49642242 -74433930 + LTR16E1 LTR ERVL 251 484 -54 2 963 3365 280 65 50 chr9 49642393 49643608 -74432564 - Lx9 LINE L1 0 7644 6412 2 963 321 26 0 0 chr9 49643610 49643648 -74432524 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 963 432 0 0 0 chr9 49643657 49643705 -74432467 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 963 390 308 0 24 chr9 49644728 49644851 -74431321 + ID_B1 SINE B4 84 203 -21 2 963 1579 256 12 12 chr9 49644862 49645080 -74431092 - MTD LTR MaLR 0 419 200 2 963 270 0 0 0 chr9 49645080 49645110 -74431062 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 963 1579 256 12 12 chr9 49645110 49645303 -74430869 - MTD LTR MaLR -220 199 8 2 963 180 309 105 35 chr9 49646242 49646413 -74429759 + MIRb SINE MIR 38 220 -48 2 963 549 297 105 111 chr9 49646474 49646965 -74429207 - MLT1F2 LTR MaLR -67 502 1 2 963 346 308 40 47 chr9 49647105 49647255 -74428917 - B1F SINE Alu 0 149 1 2 963 247 269 42 69 chr9 49648915 49649059 -74427113 + MER53 DNA hAT 44 183 -10 2 963 260 291 153 36 chr9 49649911 49650215 -74425957 + ORR1E LTR MaLR 1 359 0 2 963 230 239 14 14 chr9 49650244 49650316 -74425856 + MLT1A1 LTR MaLR 337 408 0 2 963 411 193 0 0 chr9 49651795 49651878 -74424294 + T-rich Low_complexity Low_complexity 1 83 0 2 963 306 231 0 15 chr9 49652053 49652119 -74424053 - B4A SINE B4 -220 72 8 2 963 189 0 0 0 chr9 49652850 49652871 -74423301 + (TTG)n Simple_repeat Simple_repeat 3 23 0 2 963 1453 101 9 0 chr9 49654789 49655007 -74421165 + URR1A DNA MER1_type 7 226 0 2 963 1590 204 51 6 chr9 49655468 49655799 -74420373 - ORR1B1 LTR MaLR -8 386 41 2 963 893 106 8 0 chr9 49655951 49656083 -74420089 + B1_Mus1 SINE Alu 15 147 -1 2 963 31 0 0 0 chr9 49656086 49656117 -74420055 + AT_rich Low_complexity Low_complexity 1 31 0 2 963 328 242 21 30 chr9 49656128 49656425 -74419747 + GA-rich Low_complexity Low_complexity 1 294 0 2 963 362 188 11 34 chr9 49657940 49658028 -74418144 - L1MA5 LINE L1 -6 6294 6209 2 963 751 287 9 69 chr9 49659079 49659311 -74416861 + B4A SINE B4 1 218 -74 2 963 432 0 0 0 chr9 49659312 49659360 -74416812 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 963 452 305 45 13 chr9 49659416 49659572 -74416600 + RSINE1 SINE B4 4 164 -1 2 963 629 284 81 35 chr9 49660791 49660847 -74415325 + B4 SINE B4 15 79 -213 2 963 220 340 12 100 chr9 49660847 49661007 -74415165 + B1_Mur1 SINE Alu 1 146 -3 2 963 240 86 0 0 chr9 49661009 49661044 -74415128 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 963 248 266 72 31 chr9 49662616 49662713 -74413459 - MLT1H LTR MaLR 0 489 389 2 963 2396 238 73 25 chr9 49662713 49663484 -74412688 - RCHARR1 DNA MER1_type 0 974 167 2 963 548 293 47 16 chr9 49663812 49664003 -74412169 - RCHARR1 DNA MER1_type -775 199 3 2 963 330 363 46 58 chr9 49664146 49664386 -74411786 - MLT1H LTR MaLR -274 275 39 2 963 1035 259 82 37 chr9 49665015 49665368 -74410804 - L1MB1 LINE L1 -467 5701 5333 2 963 462 275 93 13 chr9 49665366 49665591 -74410581 + L1MB1 LINE L1 5837 6079 -89 2 963 322 301 157 102 chr9 49665624 49665817 -74410355 + B4 SINE B4 2 205 -87 2 963 567 0 0 0 chr9 49665817 49665880 -74410292 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 963 322 301 157 102 chr9 49665880 49665960 -74410212 + B4 SINE B4 206 290 -2 2 963 270 106 0 0 chr9 49665982 49666029 -74410143 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 963 402 21 0 0 chr9 49666042 49666089 -74410083 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 963 309 304 65 0 chr9 49666094 49666232 -74409940 + L1MA10 LINE L1 6176 6322 -12 2 963 183 205 0 0 chr9 49667870 49667909 -74408263 + C-rich Low_complexity Low_complexity 4 42 0 2 963 201 250 27 14 chr9 49667915 49667988 -74408184 + CT-rich Low_complexity Low_complexity 3 76 0 2 963 219 260 84 28 chr9 49668675 49668782 -74407390 - L2c LINE L2 -9 3378 3266 2 963 217 254 0 35 chr9 49669806 49669863 -74406309 + GA-rich Low_complexity Low_complexity 3 57 0 2 963 519 250 35 60 chr9 49670056 49670256 -74405916 + B3A SINE B2 1 195 -3 2 963 735 303 129 0 chr9 49670788 49671082 -74405090 + Lx8 LINE L1 6868 7199 -274 2 963 1010 230 34 0 chr9 49671175 49671384 -74404788 + B3 SINE B2 1 216 0 2 963 2219 104 3 0 chr9 49672637 49672955 -74403217 + ORR1A2 LTR MaLR 1 319 -8 2 963 21 0 0 0 chr9 49673345 49673366 -74402806 + GC_rich Low_complexity Low_complexity 1 21 0 2 963 486 0 0 0 chr9 49673735 49673789 -74402383 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 963 186 43 0 0 chr9 49675601 49675624 -74400548 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 963 226 163 41 0 chr9 49676231 49676280 -74399892 + GA-rich Low_complexity Low_complexity 2 52 0 2 964 266 380 53 0 chr9 49676419 49676532 -74399640 - MLT1G3 LTR MaLR -456 139 21 2 964 396 0 0 0 chr9 49678161 49678205 -74397967 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 964 258 279 105 9 chr9 49680354 49680489 -74395683 + L2c LINE L2 3229 3361 -14 2 964 629 259 175 31 chr9 49681065 49681391 -74394781 + MLT1B LTR MaLR 9 381 -9 2 964 189 74 0 0 chr9 49682491 49682518 -74393654 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2 964 288 328 7 0 chr9 49683737 49683777 -74392395 + B4A SINE B4 4 86 -206 2 964 253 321 35 44 chr9 49683777 49683891 -74392281 + PB1D7 SINE Alu 1 113 -7 2 964 761 272 21 56 chr9 49683902 49684186 -74391986 + B4A SINE B4 1 274 -18 2 964 1700 129 113 17 chr9 49684198 49684498 -74391674 - ORR1A4 LTR MaLR 0 329 1 2 964 9514 162 42 68 chr9 49684498 49686512 -74389660 - ORR1A4-int LTR MaLR 0 1963 1 2 964 1543 139 113 17 chr9 49686512 49686812 -74389360 - ORR1A4 LTR MaLR 0 329 1 2 964 351 0 0 0 chr9 49686854 49686893 -74389279 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 964 399 194 19 58 chr9 49687189 49687293 -74388879 - MLT1C LTR MaLR -312 155 56 2 964 193 167 37 0 chr9 49688288 49688342 -74387830 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 964 234 382 39 19 chr9 49688685 49688840 -74387332 - MIRb SINE MIR -46 222 65 2 964 216 0 0 0 chr9 49690297 49690321 -74385851 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 964 27 73 0 0 chr9 49692150 49692205 -74383967 + AT_rich Low_complexity Low_complexity 1 55 0 2 964 1531 283 66 46 chr9 49693890 49694545 -74381627 + L1MC3 LINE L1 6699 7366 -419 2 964 564 253 45 50 chr9 49694607 49694786 -74381386 - RMER30 DNA MER1_type -23 179 2 2 964 881 214 40 10 chr9 49694814 49695012 -74381160 + B4 SINE B4 16 219 -73 2 964 404 322 42 8 chr9 49695013 49695132 -74381040 + B4A SINE B4 28 150 -142 2 964 360 0 0 0 chr9 49695231 49695271 -74380901 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 964 666 250 145 11 chr9 49695274 49695557 -74380615 + L1MC3 LINE L1 7456 7776 -9 2 964 375 269 0 0 chr9 49696145 49696223 -74379949 + RSINE1 SINE B4 2 79 -86 2 964 1084 289 97 52 chr9 49696223 49696851 -74379321 - L1M2 LINE L1 -743 5400 4745 2 964 519 285 84 28 chr9 49696890 49696939 -74379233 + L1MA4 LINE L1 5643 5690 -610 2 964 333 0 0 0 chr9 49696939 49696976 -74379196 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 964 519 285 84 28 chr9 49696976 49697111 -74379061 + L1MA4 LINE L1 5691 5842 -458 2 964 2449 135 69 28 chr9 49697111 49697546 -74378626 + RLTR11B LTR ERVK 1 453 0 2 964 519 285 84 28 chr9 49697546 49697609 -74378563 + L1MA4 LINE L1 5843 5905 -395 2 964 584 223 23 2 chr9 49698020 49698178 -74377994 + B3A SINE B2 3 163 -53 2 964 483 130 0 0 chr9 49698178 49698278 -74377894 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 964 387 56 0 0 chr9 49698300 49698354 -74377818 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 964 1593 174 66 110 chr9 49698978 49699416 -74376756 - MTD LTR MaLR 0 419 1 2 964 698 293 83 22 chr9 49699422 49699806 -74376366 + L1MA4 LINE L1 5595 6024 -279 2 964 330 306 103 29 chr9 49701704 49701879 -74374293 + MTEa LTR MaLR 1 188 -171 2 964 372 224 10 39 chr9 49701925 49702027 -74374145 + MTEa LTR MaLR 278 376 -3 2 964 266 284 136 39 chr9 49702878 49703032 -74373140 - MER5A DNA MER1_type -4 185 17 2 964 321 309 58 7 chr9 49703098 49703235 -74372937 + ID_B1 SINE B4 81 224 0 2 964 561 189 13 13 chr9 49703362 49703512 -74372660 + GA-rich Low_complexity Low_complexity 4 153 0 2 964 288 240 12 107 chr9 49703515 49703599 -74372573 + ID4_ SINE ID 8 83 0 2 964 300 247 20 49 chr9 49703759 49703861 -74372311 - MER58A DNA MER1_type -68 156 58 2 964 1127 50 35 0 chr9 49704063 49704204 -74371968 + B1_Mus2 SINE Alu 1 146 -1 2 964 1292 138 174 60 chr9 49704834 49705151 -74371021 - ORR1C2 LTR MaLR 0 384 32 2 964 402 300 50 0 chr9 49705484 49705624 -74370548 - RMER15 LTR ERVL 0 575 429 2 964 1033 263 86 13 chr9 49705841 49706145 -74370027 + MTEa LTR MaLR 50 375 -4 2 964 759 291 21 39 chr9 49706770 49707053 -74369119 - Lx8 LINE L1 0 7473 7196 2 964 228 35 0 0 chr9 49708309 49708338 -74367834 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 2 964 264 327 102 12 chr9 49709314 49709481 -74366691 + L2 LINE L2 2684 2865 -554 2 964 481 308 25 81 chr9 49709579 49709777 -74366395 - B3A SINE B2 -1 197 11 2 964 180 301 253 0 chr9 49710475 49710558 -74365614 + MIR SINE MIR 51 154 -108 2 964 735 283 14 9 chr9 49710572 49710786 -74365386 + B3 SINE B2 2 216 0 2 964 966 310 71 35 chr9 49710953 49711558 -74364614 + L1M2 LINE L1 4602 5228 -915 2 964 2130 50 26 16 chr9 49711563 49711866 -74364306 + IAPLTR2b LTR ERVK 2 307 -20 2 964 1057 264 124 33 chr9 49711883 49712527 -74363645 + L1MB5 LINE L1 5163 5947 -227 3 964 360 0 0 0 chr9 49712527 49712567 -74363605 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 964 535 229 89 25 chr9 49712567 49712582 -74363590 + L1MB5 LINE L1 5948 5963 -211 3 964 540 302 135 24 chr9 49714198 49714568 -74361604 - CR1_Mam LINE CR1 -595 1609 1199 3 964 222 328 100 8 chr9 49715071 49715191 -74360981 + MIRb SINE MIR 31 161 -107 3 964 450 276 117 37 chr9 49715216 49715404 -74360768 - MIR SINE MIR -26 236 34 3 964 245 314 20 0 chr9 49715667 49715769 -74360403 + L1MEg LINE L1 210 313 -5929 3 964 757 99 16 0 chr9 49716066 49716187 -74359985 + (TC)n Simple_repeat Simple_repeat 1 123 0 3 964 1176 255 109 47 chr9 49716228 49716891 -74359281 + L1MEg LINE L1 3287 3990 -2156 3 964 288 274 39 13 chr9 49717238 49717314 -74358858 + PB1D10 SINE Alu 17 94 -26 3 964 934 311 46 18 chr9 49717387 49717776 -74358396 - Lx8 LINE L1 -329 7144 6745 3 964 595 278 130 25 chr9 49717774 49718058 -74358114 + Lx8 LINE L1 7154 7467 -6 3 964 725 315 86 37 chr9 49718107 49718733 -74357439 + L1MEg LINE L1 4452 5108 -1038 3 964 186 133 0 0 chr9 49718794 49718824 -74357348 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 3 964 279 304 17 67 chr9 49718826 49718946 -74357226 - RMER12 LTR ERVK -467 855 742 3 964 827 203 7 0 chr9 49718974 49719117 -74357055 + B1_Mur4 SINE Alu 1 144 -6 3 964 246 352 6 22 chr9 49719135 49719315 -74356857 + GA-rich Low_complexity Low_complexity 4 180 0 3 964 1967 172 81 120 chr9 49719325 49719907 -74356265 - RMER15 LTR ERVL -16 559 1 3 964 306 0 0 0 chr9 49719911 49719945 -74356227 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 964 318 26 0 0 chr9 49720811 49720850 -74355322 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 964 375 23 0 0 chr9 49721030 49721074 -74355098 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 964 1993 154 12 3 chr9 49721080 49721425 -74354747 - Lx LINE L1 -17 6637 6290 3 964 278 268 112 35 chr9 49721455 49721571 -74354601 - ORR1E LTR MaLR -216 143 19 3 964 255 241 7 29 chr9 49722299 49722436 -74353736 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 3 964 834 299 130 73 chr9 49722513 49722984 -74353188 - MLT2B3 LTR ERVL -52 665 130 3 964 232 301 142 34 chr9 49723198 49723346 -74352826 - L2b LINE L2 -1 3374 3211 3 964 248 234 141 0 chr9 49724105 49724169 -74352003 - RSINE1 SINE B4 -1 164 92 3 964 1502 206 101 20 chr9 49724203 49724559 -74351613 + Lx5 LINE L1 5974 6358 -692 3 964 203 399 94 12 chr9 49725143 49725303 -74350869 + MIRc SINE MIR 33 205 -63 3 964 300 292 2 11 chr9 49725308 49725409 -74350763 + PB1D10 SINE Alu 6 107 -13 3 964 229 330 216 23 chr9 49726796 49727352 -74348820 + L2 LINE L2 2238 2900 -519 3 964 207 0 0 0 chr9 49730213 49730236 -74345936 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3 964 216 379 22 50 chr9 49732640 49732779 -74343393 - MER5A DNA MER1_type -7 182 48 3 964 330 302 96 52 chr9 49733008 49733195 -74342977 - MIRb SINE MIR -13 255 52 3 964 416 286 110 42 chr9 49733515 49733778 -74342394 - MER34A LTR ERV1 -31 540 260 3 964 360 0 0 0 chr9 49733886 49733926 -74342246 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 964 280 274 245 0 chr9 49733927 49734029 -74342143 - MER34A LTR ERV1 -441 130 4 3 964 217 303 58 48 chr9 49734253 49734357 -74341815 + MIR3 SINE MIR 87 191 -17 3 964 486 0 0 0 chr9 49734424 49734478 -74341694 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 3 964 303 156 36 18 chr9 49735174 49735285 -74340887 + (TCTG)n Simple_repeat Simple_repeat 4 116 0 3 964 337 213 40 13 chr9 49735285 49735361 -74340811 - HAL1-3A_ME LINE L1 -812 2046 1969 3 964 583 279 22 38 chr9 49736935 49737118 -74339054 + B3A SINE B2 3 182 -16 3 964 386 350 31 6 chr9 49737185 49737346 -74338826 - MIRb SINE MIR -69 199 35 3 964 276 296 24 24 chr9 49738066 49738149 -74338023 - BC1_Mm scRNA scRNA -64 88 6 3 964 376 244 25 13 chr9 49738075 49738154 -74338018 - ID SINE ID -144 80 1 3 964 180 0 0 0 chr9 49738155 49738175 -74337997 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 964 504 243 31 38 chr9 49738178 49738327 -74337845 - B1F SINE Alu -1 148 1 3 964 519 318 148 48 chr9 49738999 49739290 -74336882 - MLT1A1 LTR MaLR -83 325 6 3 964 899 216 41 73 chr9 49739787 49740007 -74336165 - ID_B1 SINE B4 -5 219 7 3 964 871 139 29 0 chr9 49740832 49740969 -74335203 + B1_Mur1 SINE Alu 9 149 0 3 964 290 236 43 33 chr9 49742219 49742311 -74333861 + MLT1A1 LTR MaLR 291 383 -25 3 964 321 312 115 39 chr9 49742386 49742516 -74333656 + RSINE1 SINE B4 1 140 -25 3 964 319 17 66 16 chr9 49742516 49742577 -74333595 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 964 590 238 97 45 chr9 49742725 49742901 -74333271 - ORR1D2 LTR MaLR 0 370 186 3 964 565 284 58 6 chr9 49743054 49743210 -74332962 - ORR1D2 LTR MaLR -186 173 10 3 964 381 93 0 0 chr9 49743283 49743337 -74332835 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 964 220 278 154 11 chr9 49743689 49743780 -74332392 + L3 LINE CR1 2028 2131 -2358 3 964 840 158 18 0 chr9 49745159 49745330 -74330842 + (TA)n Simple_repeat Simple_repeat 2 175 0 3 964 434 291 69 32 chr9 49745387 49745575 -74330597 - MER34A LTR ERV1 -192 379 185 3 964 369 43 0 0 chr9 49746162 49746209 -74329963 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 3 964 394 306 18 26 chr9 49746314 49746428 -74329744 - MER34A LTR ERV1 -429 113 1 3 964 1326 85 16 31 chr9 49746755 49746949 -74329223 - B2_Mm2 SINE B2 -3 192 2 3 964 248 0 31 0 chr9 49746955 49746987 -74329185 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 964 187 89 70 18 chr9 49747531 49747588 -74328584 + (TTG)n Simple_repeat Simple_repeat 2 61 0 3 964 1012 162 15 45 chr9 49749206 49749406 -74326766 + B2_Mm2 SINE B2 2 195 0 3 964 280 264 23 11 chr9 49749519 49749607 -74326565 + GA-rich Low_complexity Low_complexity 3 91 0 3 964 201 380 18 18 chr9 49750651 49750761 -74325411 - MIRc SINE MIR -7 261 152 3 964 281 291 22 55 chr9 49750742 49750833 -74325339 - MIRm SINE MIR -149 127 40 3 964 329 325 119 95 chr9 49751133 49751418 -74324754 + B4 SINE B4 1 292 0 3 964 23 33 0 0 chr9 49751422 49751452 -74324720 + AT_rich Low_complexity Low_complexity 1 30 0 3 964 1608 176 90 9 chr9 49751453 49751796 -74324376 + ORR1D1 LTR MaLR 4 374 0 3 964 310 256 35 11 chr9 49751841 49751928 -74324244 + ID SINE ID 1 89 -135 3 964 251 224 0 17 chr9 49752114 49752173 -74323999 + MLT1A0 LTR MaLR 302 359 -6 3 964 1620 0 0 0 chr9 49752982 49753162 -74323010 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 3 964 426 39 0 0 chr9 49753162 49753214 -74322958 + (TTCCC)n Simple_repeat Simple_repeat 4 55 0 3 964 776 8 75 0 chr9 49753214 49753347 -74322825 + (TCC)n Simple_repeat Simple_repeat 2 144 0 3 964 835 276 22 54 chr9 49754648 49754840 -74321332 - B3 SINE B2 0 216 31 3 964 1328 185 5 0 chr9 49754840 49755062 -74321110 - URR1B DNA MER1_type -2 223 1 3 964 835 276 22 54 chr9 49755062 49755091 -74321081 - B3 SINE B2 -186 30 2 3 964 495 0 0 0 chr9 49755471 49755526 -74320646 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 964 696 186 4 9 chr9 49755526 49755738 -74320434 + CT-rich Low_complexity Low_complexity 1 211 0 3 964 468 263 0 26 chr9 49756038 49756155 -74320017 + B3A SINE B2 1 114 -84 3 964 630 39 0 0 chr9 49756165 49756242 -74319930 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 964 1687 281 43 16 chr9 49757129 49757618 -74318554 + RMER5 LTR ERV1 33 534 0 3 964 506 329 101 13 chr9 49758778 49759006 -74317166 + LTR78 LTR ERV1 1056 1303 -1 3 964 529 252 8 8 chr9 49759105 49759225 -74316947 + B3A SINE B2 1 120 -78 3 964 489 62 0 0 chr9 49759239 49759304 -74316868 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 3 964 21 0 0 0 chr9 49761268 49761289 -74314883 + AT_rich Low_complexity Low_complexity 1 21 0 3 964 436 278 14 2 chr9 49762386 49762495 -74313677 - PB1D10 SINE Alu 0 127 10 3 964 238 329 48 12 chr9 49762425 49762508 -74313664 - B4A SINE B4 -125 167 82 3 964 2391 116 57 82 chr9 49764266 49764707 -74311465 + RLTR23 LTR ERV1 1 430 0 3 964 359 285 162 51 chr9 49764912 49765126 -74311046 + MIRb SINE MIR 27 256 -6 3 964 337 360 53 29 chr9 49765311 49765520 -74310652 - L3 LINE CR1 -109 4380 4167 3 964 238 360 0 0 chr9 49765520 49765595 -74310577 - MTEb LTR MaLR 0 379 305 3 964 241 345 11 45 chr9 49765848 49765936 -74310236 - ORR1E LTR MaLR -272 87 3 3 964 193 104 89 25 chr9 49766099 49766178 -74309994 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 3 964 425 254 74 0 chr9 49766594 49766716 -74309456 - L1MA8 LINE L1 -173 6118 5988 3 964 24 0 0 0 chr9 49768167 49768191 -74307981 + AT_rich Low_complexity Low_complexity 1 24 0 3 964 252 273 0 0 chr9 49768766 49768854 -74307318 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 964 236 291 88 21 chr9 49770553 49770676 -74305496 + MIR SINE MIR 28 160 -108 3 964 445 229 83 0 chr9 49770731 49770827 -74305345 - MER58B DNA MER1_type -8 333 230 3 964 1212 181 209 163 chr9 49772271 49772779 -74303393 - MT2A LTR ERVL 0 533 3 3 964 543 16 0 0 chr9 49773034 49773098 -74303074 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 964 850 222 34 66 chr9 49773317 49773519 -74302653 - B3A SINE B2 -14 184 10 3 964 205 313 90 0 chr9 49773684 49773751 -74302421 - L4 LINE RTE -252 1777 1705 3 964 207 204 20 20 chr9 49773797 49773847 -74302325 + CT-rich Low_complexity Low_complexity 3 52 0 3 964 1198 50 0 0 chr9 49773958 49774097 -74302075 + B1_Mus2 SINE Alu 1 139 -8 3 964 1196 282 61 15 chr9 49774215 49774543 -74301629 - MTEa LTR MaLR -1 378 36 3 964 226 294 54 11 chr9 49775610 49775703 -74300469 + L1MC4 LINE L1 7512 7608 -434 4 964 296 190 216 0 chr9 49775825 49775941 -74300231 + L1MC4 LINE L1 7761 7901 -141 4 964 222 329 14 0 chr9 49776320 49776390 -74299782 + MIR3 SINE MIR 138 208 0 4 964 465 314 55 50 chr9 49776664 49776845 -74299327 + B3A SINE B2 1 182 -16 4 964 287 121 0 29 chr9 49776845 49776913 -74299259 + (CAGAGA)n Simple_repeat Simple_repeat 3 68 0 4 964 293 155 17 0 chr9 49777046 49777104 -74299068 + GA-rich Low_complexity Low_complexity 2 60 0 4 964 1647 225 82 18 chr9 49777143 49777532 -74298640 - MTD LTR MaLR 0 419 6 4 964 352 294 0 16 chr9 49778335 49778456 -74297716 - MLT1A1 LTR MaLR 0 408 290 4 964 614 256 97 27 chr9 49778607 49778792 -74297380 + B3A SINE B2 1 198 0 4 964 294 143 0 0 chr9 49778813 49778862 -74297310 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 4 964 265 315 57 63 chr9 49778973 49779132 -74297040 + MLT1K LTR MaLR 357 514 -81 4 964 423 0 0 0 chr9 49781928 49781975 -74294197 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 964 643 300 39 97 chr9 49783099 49783273 -74292899 + B4 SINE B4 1 152 -140 4 964 2924 111 2 48 chr9 49783273 49783748 -74292424 - RLTR11B LTR ERVK 0 453 1 4 964 643 300 39 97 chr9 49783748 49783810 -74292362 + B4 SINE B4 153 214 -78 4 964 380 37 0 18 chr9 49783810 49783865 -74292307 + (TAAAA)n Simple_repeat Simple_repeat 4 57 0 4 964 643 300 39 97 chr9 49783865 49783937 -74292235 + B4 SINE B4 215 291 -1 4 964 466 253 250 11 chr9 49784998 49785186 -74290986 + B4 SINE B4 2 234 -58 4 964 270 194 0 0 chr9 49785256 49785328 -74290844 + CT-rich Low_complexity Low_complexity 1 72 0 4 964 255 309 92 21 chr9 49785376 49785518 -74290654 + MIRb SINE MIR 80 231 -37 4 964 815 278 123 132 chr9 49786131 49786496 -74289676 + MTD LTR MaLR 18 379 0 4 964 414 0 0 0 chr9 49786540 49786586 -74289586 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 964 261 343 140 35 chr9 49786596 49786853 -74289319 - LTR85a LTR Gypsy? -128 574 291 4 964 231 321 0 13 chr9 49787077 49787156 -74289016 + CT-rich Low_complexity Low_complexity 1 78 0 4 964 469 309 65 59 chr9 49787157 49787181 -74288991 - ID_B1 SINE B4 -46 246 139 4 964 472 256 59 15 chr9 49787181 49787316 -74288856 - B1F2 SINE Alu -7 142 2 4 964 469 309 65 59 chr9 49787316 49787329 -74288843 - ID_B1 SINE B4 -46 138 70 4 964 426 20 0 0 chr9 49787864 49787915 -74288257 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 964 537 261 118 31 chr9 49787933 49788162 -74288010 + RMER21B LTR ERV1 319 567 -275 4 964 402 74 0 0 chr9 49788236 49788290 -74287882 + (TAA)n Simple_repeat Simple_repeat 2 55 0 4 964 279 280 115 50 chr9 49788907 49789046 -74287126 + MIRb SINE MIR 65 212 -56 4 964 202 286 0 0 chr9 49789790 49789839 -74286333 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 964 1260 138 11 0 chr9 49790037 49790226 -74285946 + B2_Mm1t SINE B2 3 193 0 4 964 7018 58 12 69 chr9 49790732 49791723 -74284449 + L1Md_F2 LINE L1 5648 6582 0 4 964 796 193 13 0 chr9 49791787 49792016 -74284156 + GA-rich Low_complexity Low_complexity 1 231 0 4 964 22 0 0 0 chr9 49792031 49792053 -74284119 + AT_rich Low_complexity Low_complexity 1 22 0 4 964 277 86 0 0 chr9 49792115 49792150 -74284022 + Lx9 LINE L1 7195 7229 -415 4 964 2090 103 18 61 chr9 49792155 49792497 -74283675 - ORR1A4 LTR MaLR -2 327 1 4 964 6278 142 28 59 chr9 49792508 49793781 -74282391 - ORR1A4-int LTR MaLR -11 1952 720 4 964 234 299 25 25 chr9 49793713 49793792 -74282380 - B4 SINE B4 -140 152 74 4 964 915 136 244 10 chr9 49793790 49793983 -74282189 - MT2B LTR ERVL -346 255 18 4 964 4131 134 47 14 chr9 49793810 49794590 -74281582 - ORR1A4-int LTR MaLR -1157 806 1 4 964 2159 109 24 59 chr9 49794590 49794931 -74281241 - ORR1A4 LTR MaLR 0 329 1 4 964 476 269 15 8 chr9 49794935 49795066 -74281106 + Lx9 LINE L1 7233 7364 -280 4 964 346 202 110 0 chr9 49795103 49795212 -74280960 + Lx9 LINE L1 7517 7637 -7 4 964 605 323 33 66 chr9 49796838 49797170 -74279002 - ORR1E LTR MaLR -38 321 1 4 964 254 298 125 31 chr9 49797274 49797402 -74278770 + MIR SINE MIR 81 224 -44 4 964 1210 236 108 0 chr9 49797408 49797713 -74278459 - MER2 DNA MER2_type -1 344 7 4 964 225 83 0 0 chr9 49798802 49798838 -74277334 + (ATG)n Simple_repeat Simple_repeat 1 36 0 4 964 691 338 11 15 chr9 49799361 49799631 -74276541 + L1MDa LINE L1 162 430 -6203 4 964 471 296 134 53 chr9 49799746 49800067 -74276105 + L1MDa LINE L1 730 1076 -5557 4 964 876 247 237 17 chr9 49800059 49800450 -74275722 + L1MDa LINE L1 4546 5017 -1520 4 964 333 0 0 0 chr9 49800450 49800487 -74275685 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 964 876 247 237 17 chr9 49800487 49800576 -74275596 + L1MDa LINE L1 5018 5132 -1405 4 964 737 260 10 50 chr9 49800579 49800781 -74275391 - B3A SINE B2 0 198 5 4 964 648 260 64 17 chr9 49800854 49801026 -74275146 - B3A SINE B2 -16 182 3 4 964 359 258 57 117 chr9 49801131 49801430 -74274742 + L1MDa LINE L1 5226 5506 -1031 4 964 561 271 139 21 chr9 49801438 49801457 -74274715 - L1MB4 LINE L1 -209 5971 5955 4 964 3610 13 2 0 chr9 49801457 49801852 -74274320 - MTA_Mm LTR MaLR 0 396 1 4 964 561 271 139 21 chr9 49801852 49802119 -74274053 - L1MB4 LINE L1 -226 5954 5651 4 964 379 250 0 0 chr9 49803607 49803675 -74272497 + ID4_ SINE ID 5 72 -11 4 964 414 0 0 0 chr9 49806198 49806244 -74269928 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 120 345 291 6 86 chr9 49807314 49807476 -74268696 - RMER10B LTR ERVL 0 398 250 4 965 315 0 0 0 chr9 49809173 49809208 -74266964 + (A)n Simple_repeat Simple_repeat 1 35 0 4 965 651 188 4 16 chr9 49810102 49810243 -74265929 + B1_Mus2 SINE Alu 5 138 -11 4 965 23 0 0 0 chr9 49810258 49810281 -74265891 + AT_rich Low_complexity Low_complexity 1 23 0 4 965 241 298 104 22 chr9 49811394 49811528 -74264644 + MER5B DNA MER1_type 27 171 -7 4 965 1271 74 6 0 chr9 49813341 49813517 -74262655 + (TCTCCC)n Simple_repeat Simple_repeat 3 179 0 4 965 408 40 0 0 chr9 49813533 49813583 -74262589 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 4 965 221 290 0 0 chr9 49813583 49813645 -74262527 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 965 466 330 6 0 chr9 49813659 49813838 -74262334 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 965 432 0 0 0 chr9 49814880 49814928 -74261244 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 965 671 238 0 40 chr9 49815990 49816139 -74260033 + B1F SINE Alu 7 149 0 4 965 21 57 0 0 chr9 49816141 49816176 -74259996 + AT_rich Low_complexity Low_complexity 1 35 0 4 965 383 349 15 8 chr9 49817735 49817868 -74258304 + MER94 DNA AcHobo 1 134 0 4 965 247 341 39 8 chr9 49817939 49818066 -74258106 + L2a LINE L2 3296 3426 0 4 965 776 256 23 0 chr9 49819340 49819516 -74256656 - B3A SINE B2 -16 182 3 4 965 1671 252 78 126 chr9 49820010 49820449 -74255723 + RMER13B LTR ERVK 1 447 -511 4 965 212 0 0 35 chr9 49820449 49820478 -74255694 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 965 1676 226 65 53 chr9 49820478 49821014 -74255158 + RMER13B LTR ERVK 382 915 -43 4 965 219 317 0 0 chr9 49821024 49821084 -74255088 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 965 479 279 175 12 chr9 49821116 49821356 -74254816 - B4A SINE B4 -13 279 1 4 965 261 0 0 0 chr9 49823112 49823141 -74253031 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 965 1701 241 10 24 chr9 49824186 49824612 -74251560 - MTC LTR MaLR -14 407 1 4 965 276 322 11 75 chr9 49825101 49825195 -74250977 - MER91C DNA Tip100 0 140 53 4 965 1030 72 7 0 chr9 49825287 49825426 -74250746 - L1_Mus1 LINE L1 -1 6566 6427 4 965 338 317 16 8 chr9 49827468 49827592 -74248580 - MLT1A1 LTR MaLR -257 151 27 4 965 386 20 0 19 chr9 49829814 49829866 -74246306 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 965 346 347 80 69 chr9 49829887 49830018 -74246154 + Charlie2b DNA MER1_type 32 170 -2612 4 965 1182 291 47 11 chr9 49830018 49830380 -74245792 + MTEa LTR MaLR 3 377 -2 4 965 346 347 80 69 chr9 49830380 49830536 -74245636 + Charlie2b DNA MER1_type 171 322 -2460 4 965 296 250 61 30 chr9 49831270 49831369 -74244803 + Charlie2b DNA MER1_type 590 691 -2091 4 965 857 237 55 5 chr9 49831918 49832117 -74244055 + B3 SINE B2 2 210 -6 4 965 722 11 11 0 chr9 49832386 49832473 -74243699 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 965 260 314 88 10 chr9 49832478 49832671 -74243501 + Charlie2b DNA MER1_type 2546 2753 -29 4 965 934 275 52 38 chr9 49834202 49834489 -74241683 + B4A SINE B4 2 292 0 4 965 207 25 75 0 chr9 49834698 49834738 -74241434 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 4 965 374 57 0 19 chr9 49834871 49834925 -74241247 + (AGGGGG)n Simple_repeat Simple_repeat 4 56 0 4 965 282 293 52 22 chr9 49835351 49835487 -74240685 - MIRb SINE MIR -18 250 111 4 965 360 0 0 0 chr9 49835708 49835748 -74240424 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 965 4672 79 5 9 chr9 49835890 49836526 -74239646 + L1_Mus1 LINE L1 5934 6566 -1 4 965 1543 247 38 41 chr9 49837701 49838119 -74238053 + MTD LTR MaLR 3 419 0 4 965 354 178 99 11 chr9 49838683 49838774 -74237398 - MLT1A1 LTR MaLR 0 408 310 4 965 351 44 0 0 chr9 49839266 49839311 -74236861 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 4 965 483 60 0 0 chr9 49840445 49840512 -74235660 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 965 396 0 0 0 chr9 49840513 49840557 -74235615 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 965 337 380 5 25 chr9 49841177 49841377 -74234795 - MLT1A1 LTR MaLR -175 273 78 4 965 640 249 163 57 chr9 49842448 49842712 -74233460 + B4A SINE B4 1 292 0 4 965 381 205 0 0 chr9 49842717 49842834 -74233338 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 965 2119 172 56 5 chr9 49842834 49843243 -74232929 + RLTR11A2 LTR ERVK 1 430 -97 4 965 405 0 0 0 chr9 49843243 49843288 -74232884 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 965 561 223 0 0 chr9 49843337 49843662 -74232510 + (CA)n Simple_repeat Simple_repeat 1 325 0 4 965 339 39 0 89 chr9 49843662 49843718 -74232454 + HAL1-3A_ME LINE L1 1976 2026 -832 4 965 227 348 120 55 chr9 49843929 49844221 -74231951 - LTR16B2 LTR ERVL -3 459 149 4 965 961 243 5 14 chr9 49844682 49844899 -74231273 - B3 SINE B2 -1 215 1 4 965 968 264 68 0 chr9 49844967 49845232 -74230940 - B4 SINE B4 -9 283 1 4 965 307 292 54 27 chr9 49845247 49845395 -74230777 - MIR SINE MIR -64 198 47 4 965 531 0 0 0 chr9 49845692 49845751 -74230421 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 965 204 125 0 0 chr9 49846694 49846726 -74229446 + (GGA)n Simple_repeat Simple_repeat 3 34 0 4 965 495 0 0 0 chr9 49846770 49846825 -74229347 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 965 251 333 0 0 chr9 49847056 49847128 -74229044 - ID_B1 SINE B4 -67 157 86 5 965 229 309 173 0 chr9 49847383 49847464 -74228708 + MER45C DNA Tip100 427 521 -432 5 965 663 130 23 8 chr9 49847694 49847826 -74228346 + G-rich Low_complexity Low_complexity 6 139 0 5 965 213 273 0 0 chr9 49849252 49849296 -74226876 + polypyrimidine Low_complexity Low_complexity 1 44 0 5 965 381 256 22 0 chr9 49849949 49850039 -74226133 + PB1D10 SINE Alu 19 110 -7 5 965 231 191 0 0 chr9 49850068 49850110 -74226062 + ORR1D1 LTR MaLR 1 42 -332 5 965 231 167 0 0 chr9 49850115 49850157 -74226015 + (TATG)n Simple_repeat Simple_repeat 1 42 0 5 965 1203 224 10 48 chr9 49850157 49850467 -74225705 + ORR1D1 LTR MaLR 38 335 -39 5 965 310 306 43 7 chr9 49851475 49851613 -74224559 + B1_Mur3 SINE Alu 1 143 -6 5 965 932 250 22 110 chr9 49853381 49853821 -74222351 - MTE2a LTR MaLR -15 404 6 5 965 821 297 94 126 chr9 49854126 49855302 -74220870 + L1MEc LINE L1 15 1153 -5247 5 965 226 310 0 14 chr9 49855407 49855479 -74220693 + ID4_ SINE ID 2 72 -11 5 965 414 346 74 45 chr9 49855486 49855755 -74220417 + B4 SINE B4 2 278 -14 5 965 429 70 0 0 chr9 49855773 49855830 -74220342 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 965 432 0 0 0 chr9 49855830 49855878 -74220294 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 5 965 188 200 0 18 chr9 49855885 49855941 -74220231 + GA-rich Low_complexity Low_complexity 3 57 0 5 965 870 294 272 27 chr9 49856012 49856553 -74219619 + L1MEc LINE L1 1243 1908 -4492 5 965 854 227 24 14 chr9 49856553 49856763 -74219409 + B3 SINE B2 1 212 -4 5 965 870 274 122 36 chr9 49856763 49857524 -74218648 + L1MEc LINE L1 1909 2722 -3597 5 965 713 265 82 12 chr9 49857615 49857871 -74218301 - MER2 DNA MER2_type 0 345 72 5 965 358 234 45 27 chr9 49858079 49858189 -74217983 - MTEb LTR MaLR 0 379 268 5 965 269 246 0 0 chr9 49858244 49858309 -74217863 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 965 466 342 16 123 chr9 49858461 49858974 -74217198 - MLT1C LTR MaLR -8 459 2 5 965 8852 62 0 3 chr9 49859007 49860114 -74216058 + L1Md_F2 LINE L1 4483 5586 -297 5 965 7162 84 10 32 chr9 49860114 49861130 -74215042 + L1Md_F2 LINE L1 5587 6579 -3 5 965 447 270 59 129 chr9 49861972 49862142 -74214030 + RSINE1 SINE B4 8 165 0 5 965 484 277 24 30 chr9 49862246 49862410 -74213762 + RSINE1 SINE B4 3 165 0 5 965 258 32 0 0 chr9 49862426 49862457 -74213715 + (TTA)n Simple_repeat Simple_repeat 2 32 0 5 965 1122 56 7 7 chr9 49862502 49862647 -74213525 - B1_Mm SINE Alu -2 145 1 5 965 690 293 82 44 chr9 49862864 49863157 -74213015 - Lx8 LINE L1 0 7473 7170 5 965 280 281 76 41 chr9 49863973 49864144 -74212028 - RLTR12B LTR ERVK -79 449 273 5 965 513 0 0 0 chr9 49864147 49864204 -74211968 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 965 466 238 90 14 chr9 49864241 49864386 -74211786 - RLTR12B LTR ERVK -326 202 47 5 965 338 301 147 0 chr9 49865374 49865530 -74210642 - MLT1L LTR MaLR -342 268 90 5 965 239 302 52 67 chr9 49866306 49866426 -74209746 + MER5A DNA MER1_type 31 148 -41 5 965 2703 137 56 98 chr9 49866426 49866924 -74209248 + RLTR20D LTR ERVK 4 466 -102 5 965 477 0 0 0 chr9 49866924 49866977 -74209195 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 965 2703 137 56 98 chr9 49866977 49867068 -74209104 + RLTR20D LTR ERVK 467 567 -1 5 965 1446 151 0 4 chr9 49867148 49867374 -74208798 + URR1B DNA MER1_type 1 225 0 5 965 2962 34 0 0 chr9 49867755 49868104 -74208068 - L1Md_T LINE L1 -1 6581 6233 5 965 457 325 67 51 chr9 49868699 49868952 -74207220 + MLT1H1 LTR MaLR 10 266 -289 5 965 331 319 81 16 chr9 49873334 49873519 -74202653 - MER117 DNA MER1_type 0 197 1 5 965 223 250 97 56 chr9 49873760 49873904 -74202268 - MIRb SINE MIR -94 168 19 5 965 225 0 0 0 chr9 49874604 49874629 -74201543 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 965 849 142 0 0 chr9 49874631 49874772 -74201400 + (GAAA)n Simple_repeat Simple_repeat 4 144 0 5 965 932 186 6 0 chr9 49876153 49876330 -74199842 + MTEa LTR MaLR 1 178 -201 5 965 353 286 101 43 chr9 49876542 49876681 -74199491 + B1F2 SINE Alu 2 148 -1 5 965 388 173 12 12 chr9 49877587 49877669 -74198503 - MamGypLTR1b LTR Gypsy -8 774 693 5 965 203 0 0 36 chr9 49879362 49879390 -74196782 + (TAA)n Simple_repeat Simple_repeat 3 29 0 5 965 1111 90 0 0 chr9 49880656 49880800 -74195372 - B1_Mus1 SINE Alu 0 148 5 5 965 243 360 22 0 chr9 49881014 49881103 -74195069 - MLT1H LTR MaLR -380 169 79 5 965 370 287 132 49 chr9 49881142 49881456 -74194716 + L1MC LINE L1 4731 5060 -1086 5 965 431 312 56 28 chr9 49881475 49881653 -74194519 - B3A SINE B2 -14 184 2 5 965 492 246 294 33 chr9 49881835 49882049 -74194123 - Lx8 LINE L1 -178 7295 7026 5 965 495 279 30 61 chr9 49882201 49882399 -74193773 - ORR1E LTR MaLR -167 192 1 5 965 1283 268 105 38 chr9 49882638 49884092 -74192080 + Lx4B LINE L1 2061 3616 -2530 5 965 268 359 69 0 chr9 49884160 49884291 -74191881 + B1F1 SINE Alu 1 140 -9 5 965 1030 203 95 82 chr9 49884450 49884767 -74191405 - ORR1D1 LTR MaLR -2 372 52 5 965 266 273 82 101 chr9 49884789 49885156 -74191016 + Lx4B LINE L1 3830 4189 -1957 5 965 324 0 0 0 chr9 49885523 49885559 -74190613 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 965 2749 196 18 13 chr9 49885655 49886212 -74189960 + RLTR20B1 LTR ERVK 1 560 -3 5 965 22 35 0 0 chr9 49886668 49886697 -74189475 + AT_rich Low_complexity Low_complexity 1 29 0 5 965 311 253 24 24 chr9 49887057 49887142 -74189030 + RLTR20B1 LTR ERVK 479 563 0 5 965 440 77 0 15 chr9 49887169 49887235 -74188937 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 5 965 891 97 14 7 chr9 49887236 49887382 -74188790 + (GAAAA)n Simple_repeat Simple_repeat 3 149 0 5 965 249 183 0 0 chr9 49887610 49887670 -74188502 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 5 965 323 321 84 51 chr9 49887751 49887948 -74188224 + Lx4B LINE L1 4983 5188 -958 5 965 609 270 0 20 chr9 49887948 49888099 -74188073 + B1F2 SINE Alu 1 148 -1 5 965 837 310 79 26 chr9 49888099 49888678 -74187494 + Lx4B LINE L1 5189 5767 -1283 5 965 459 241 0 9 chr9 49888992 49889101 -74187071 - PB1D10 SINE Alu -7 110 3 5 965 843 201 132 29 chr9 49889744 49889949 -74186223 - URR1A DNA MER1_type 0 226 1 5 965 4450 12 2 12 chr9 49890093 49890591 -74185581 + MT2_Mm LTR ERVL 1 493 0 5 965 41410 16 14 0 chr9 49890591 49895878 -74180294 + MERVL-int LTR ERVL 1 5360 -125 5 965 362 167 46 35 chr9 49895878 49895965 -74180207 + ORR1A3-int LTR MaLR 553 640 -1323 5 965 321 0 0 0 chr9 49895965 49896003 -74180169 + MERVL-int LTR ERVL 5448 5485 0 5 965 4469 10 2 12 chr9 49896003 49896501 -74179671 + MT2_Mm LTR ERVL 1 493 0 5 965 209 282 38 25 chr9 49896645 49896725 -74179447 + MIRb SINE MIR 188 268 0 5 965 397 331 64 0 chr9 49897479 49897636 -74178536 + MLT1H LTR MaLR 75 241 -308 5 965 256 294 83 35 chr9 49897782 49897951 -74178221 + MLT1H LTR MaLR 311 487 -2 5 965 1025 210 224 18 chr9 49898299 49898742 -74177430 - RMER4B LTR ERVK -11 574 1 5 965 227 333 0 7 chr9 49898805 49898897 -74177275 - MIRb SINE MIR -171 105 16 5 965 318 322 28 66 chr9 49899446 49899659 -74176513 + L3 LINE CR1 3693 3897 -592 5 965 345 282 0 0 chr9 49900012 49900175 -74175997 + (TG)n Simple_repeat Simple_repeat 2 164 0 5 965 192 158 0 0 chr9 49900195 49900233 -74175939 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 965 529 296 169 36 chr9 49900672 49900973 -74175199 + MLT1A0 LTR MaLR 25 365 0 5 965 293 250 91 0 chr9 49901970 49902058 -74174114 - L1MA4 LINE L1 -741 5559 5464 5 965 630 274 81 47 chr9 49902052 49902434 -74173738 + L1MA4 LINE L1 5561 5882 -418 5 965 491 85 44 44 chr9 49902519 49902654 -74173518 + (TCTCTG)n Simple_repeat Simple_repeat 2 136 0 5 965 270 0 0 0 chr9 49902667 49902697 -74173475 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 965 526 207 103 0 chr9 49902871 49902987 -74173185 + B1_Mur1 SINE Alu 1 128 -21 5 965 195 114 0 0 chr9 49903010 49903045 -74173127 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 5 965 817 239 95 11 chr9 49903716 49903906 -74172266 - B3 SINE B2 -2 214 9 5 965 307 261 44 26 chr9 49905232 49905346 -74170826 + MIR SINE MIR 49 164 -98 5 965 1402 229 67 22 chr9 49905609 49905970 -74170202 - MTE2b LTR MaLR -2 377 1 5 965 10389 53 2 1 chr9 49905984 49907947 -74168225 - L1Md_F2 LINE L1 -1 6581 4618 5 965 345 24 0 0 chr9 49908003 49908045 -74168127 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 5 965 423 0 0 0 chr9 49909259 49909306 -74166866 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 965 395 303 49 44 chr9 49910023 49910206 -74165966 + MIR SINE MIR 64 247 -15 5 965 180 152 0 0 chr9 49911477 49911510 -74164662 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 5 965 513 237 206 0 chr9 49911626 49911757 -74164415 + B3 SINE B2 2 159 -57 5 965 237 189 38 0 chr9 49911782 49911835 -74164337 + GA-rich Low_complexity Low_complexity 5 59 0 5 965 1070 96 6 22 chr9 49911835 49912017 -74164155 + (GAA)n Simple_repeat Simple_repeat 1 179 0 5 965 722 276 86 57 chr9 49912412 49912692 -74163480 + B4 SINE B4 1 288 -4 5 965 195 42 0 0 chr9 49912707 49912731 -74163441 + (TATG)n Simple_repeat Simple_repeat 3 26 0 5 965 281 48 0 45 chr9 49913303 49913347 -74162825 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 5 965 270 0 0 0 chr9 49913721 49913751 -74162421 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 965 1066 274 15 8 chr9 49913814 49914075 -74162097 - B4 SINE B4 -18 274 12 5 965 23 0 0 0 chr9 49914106 49914129 -74162043 + AT_rich Low_complexity Low_complexity 1 23 0 5 965 770 204 0 0 chr9 49915742 49915879 -74160293 + B1F SINE Alu 5 141 -8 5 965 2976 55 14 0 chr9 49916100 49916465 -74159707 - L1_Mus2 LINE L1 -164 6402 6033 5 965 1046 116 16 32 chr9 49916465 49916652 -74159520 + L1_Mus3 LINE L1 6453 6636 -2 5 965 1022 209 52 58 chr9 49916945 49917420 -74158752 - RLTR20C LTR ERVK 0 551 2 5 965 437 281 50 36 chr9 49918875 49919015 -74157157 + RSINE1 SINE B4 3 144 -21 5 965 243 281 0 33 chr9 49919628 49919720 -74156452 + (CATA)n Simple_repeat Simple_repeat 3 91 0 5 965 291 320 53 70 chr9 49919858 49920160 -74156012 - L1M5 LINE L1 -1219 4927 4631 6 965 2633 207 50 117 chr9 49920244 49920972 -74155200 + Lx6 LINE L1 6778 7456 -4 6 965 419 284 93 28 chr9 49921176 49921390 -74154782 - L1MEc LINE L1 -1907 4412 4185 6 965 971 287 45 56 chr9 49921412 49921926 -74154246 - L1MA5A LINE L1 -433 5864 5357 6 965 684 244 132 65 chr9 49922001 49922434 -74153738 - L1MEc LINE L1 -4797 1603 1142 6 965 736 262 65 71 chr9 49922489 49923024 -74153148 - L1MEc LINE L1 -5230 1170 639 6 965 384 338 99 63 chr9 49923489 49923560 -74152612 - MLT1G3 LTR MaLR -50 545 471 6 965 513 58 0 0 chr9 49923560 49923629 -74152543 + (TTTTC)n Simple_repeat Simple_repeat 3 71 0 6 965 1094 86 0 0 chr9 49923630 49923770 -74152402 - B1_Mus1 SINE Alu -7 141 2 6 965 384 338 99 63 chr9 49923770 49923999 -74152173 - MLT1G3 LTR MaLR -125 470 232 6 965 2455 267 57 58 chr9 49923999 49924947 -74151225 + L1MA5 LINE L1 4318 5288 -855 6 965 243 0 0 0 chr9 49924947 49924974 -74151198 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 965 2455 268 60 57 chr9 49924974 49925193 -74150979 + L1MA5 LINE L1 5289 5486 -814 6 965 525 308 25 19 chr9 49925193 49925355 -74150817 + RSINE1 SINE B4 3 165 0 6 965 2280 269 63 55 chr9 49925355 49926161 -74150011 + L1MA5 LINE L1 5487 6300 0 6 965 387 0 0 0 chr9 49926275 49926318 -74149854 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 965 1583 254 22 0 chr9 49927457 49927858 -74148314 - MTD LTR MaLR -9 410 1 6 965 402 21 0 0 chr9 49928488 49928535 -74147637 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 6 965 725 85 0 9 chr9 49928596 49928703 -74147469 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 6 965 22 0 0 0 chr9 49929466 49929488 -74146684 + AT_rich Low_complexity Low_complexity 1 22 0 6 965 939 290 32 87 chr9 49930052 49930453 -74145719 - MTEb LTR MaLR 0 379 1 6 965 192 240 20 0 chr9 49931845 49931895 -74144277 - L2a LINE L2 -13 3413 3363 6 965 681 311 123 35 chr9 49932035 49932352 -74143820 + LTR16C LTR ERVL 119 463 -26 6 965 1239 283 67 36 chr9 49933114 49933634 -74142538 - MLT1F LTR MaLR -11 537 2 6 965 1017 198 164 3 chr9 49934286 49934610 -74141562 - RMER17C LTR ERVK -34 376 1 6 965 226 250 18 0 chr9 49935232 49935288 -74140884 - MLT1A0 LTR MaLR -258 107 51 6 965 297 325 70 50 chr9 49935383 49935584 -74140588 - LTR89 LTR ERVL? -411 468 264 6 965 265 301 56 37 chr9 49937328 49937435 -74138737 + MLT2B2 LTR ERVL 1 109 -406 6 965 2629 321 123 35 chr9 49937750 49938211 -74137961 + MTE-int LTR MaLR 1 483 -1097 6 120 2088 97 9 51 chr9 49938211 49938547 -74137625 + RLTRETN_Mm LTR ERVK 1 322 0 6 966 2629 321 123 35 chr9 49938547 49939532 -74136640 + MTE-int LTR MaLR 484 1574 -6 6 966 237 266 61 41 chr9 49939536 49939634 -74136538 + MLT2B2 LTR ERVL 1 100 -415 6 966 1128 199 209 167 chr9 49940253 49940715 -74135457 + MT2A LTR ERVL 5 489 -44 6 966 609 52 0 0 chr9 49940715 49940792 -74135380 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 6 966 1128 199 209 167 chr9 49940792 49940837 -74135335 + MT2A LTR ERVL 490 533 0 6 966 225 65 0 0 chr9 49940987 49941018 -74135154 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6 966 218 175 0 45 chr9 49941018 49941084 -74135088 + (TTTG)n Simple_repeat Simple_repeat 4 66 0 6 966 309 26 0 0 chr9 49941305 49941343 -74134829 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 966 568 221 29 14 chr9 49941509 49941647 -74134525 + B1F SINE Alu 10 149 0 6 966 757 296 108 42 chr9 49941652 49941984 -74134188 - MLT1C LTR MaLR -105 362 9 6 966 220 272 136 0 chr9 49942271 49942352 -74133820 - PB1D7 SINE Alu -7 113 22 6 966 498 202 67 78 chr9 49943730 49943869 -74132303 + B2_Mm2 SINE B2 5 152 -43 6 966 288 0 0 0 chr9 49943869 49943901 -74132271 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 966 387 0 0 0 chr9 49943901 49943943 -74132229 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 966 498 202 67 78 chr9 49943943 49943995 -74132177 + B2_Mm2 SINE B2 153 194 -1 6 966 221 176 65 4 chr9 49944261 49944318 -74131854 + L2a LINE L2 3328 3425 -1 6 966 235 243 141 18 chr9 49945364 49945505 -74130667 - MIRb SINE MIR -22 246 71 6 966 297 0 0 0 chr9 49945882 49945915 -74130257 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 6 966 252 241 0 0 chr9 49946501 49946580 -74129592 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 966 214 314 34 23 chr9 49947541 49947629 -74128543 - MIRb SINE MIR -167 101 13 6 966 396 263 21 5 chr9 49947786 49947933 -74128239 + L1M5 LINE L1 5442 5597 -706 6 966 1290 83 0 0 chr9 49948433 49948651 -74127521 + (GGGA)n Simple_repeat Simple_repeat 1 218 0 6 966 233 383 0 0 chr9 49950736 49950817 -74125355 + L3b LINE CR1 128 208 -274 6 966 495 0 0 0 chr9 49952543 49952598 -74123574 + (GAA)n Simple_repeat Simple_repeat 1 55 0 6 966 701 295 42 122 chr9 49954084 49954370 -74121802 + B4 SINE B4 2 264 -28 6 966 333 125 0 0 chr9 49954395 49954451 -74121721 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 966 21 36 0 0 chr9 49955248 49955276 -74120896 + AT_rich Low_complexity Low_complexity 1 28 0 6 966 661 299 5 49 chr9 49955284 49955488 -74120684 - B3A SINE B2 -2 196 2 6 966 218 350 40 0 chr9 49956804 49956904 -74119268 + L2 LINE L2 782 885 -2534 6 966 403 295 86 0 chr9 49956908 49957047 -74119125 + ORR1E LTR MaLR 1 151 -208 6 966 473 263 34 82 chr9 49957520 49957573 -74118599 - B3A SINE B2 0 198 158 6 966 405 0 0 0 chr9 49957573 49957618 -74118554 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 966 473 263 34 82 chr9 49957618 49957771 -74118401 - B3A SINE B2 -41 157 2 6 966 414 0 0 0 chr9 49959084 49959130 -74117042 + (TAA)n Simple_repeat Simple_repeat 2 47 0 6 966 447 317 70 77 chr9 49959763 49960166 -74116006 + L1MC4 LINE L1 727 1126 -5089 6 966 488 252 18 25 chr9 49960201 49960359 -74115813 + B3A SINE B2 58 214 -2 6 966 680 252 0 7 chr9 49960516 49960660 -74115512 + B1_Mur1 SINE Alu 5 147 -2 6 966 415 295 96 48 chr9 49960710 49960856 -74115316 + B4 SINE B4 11 163 -129 6 966 249 33 0 0 chr9 49960937 49960967 -74115205 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 966 373 275 11 0 chr9 49961080 49961171 -74115001 + MTEa LTR MaLR 14 105 -254 6 966 428 233 38 30 chr9 49961222 49961355 -74114817 + MTEa LTR MaLR 246 379 0 6 966 671 199 37 0 chr9 49961373 49961509 -74114663 + B1_Mur2 SINE Alu 3 143 -6 6 966 384 119 0 0 chr9 49961826 49961885 -74114287 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 966 242 277 42 21 chr9 49962297 49962393 -74113779 - ID_B1 SINE B4 -8 216 119 6 966 9115 22 0 0 chr9 49964113 49965150 -74111022 + L1Md_T LINE L1 4550 5586 -297 6 966 8236 52 0 0 chr9 49965150 49966145 -74110027 + L1Md_T LINE L1 5587 6581 -1 6 966 467 297 65 80 chr9 49966151 49966352 -74109820 - B3A SINE B2 0 198 1 6 966 394 18 18 18 chr9 49966947 49967003 -74109169 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 966 2009 214 33 27 chr9 49967399 49967888 -74108284 - RMER5 LTR ERV1 -10 524 33 6 966 987 240 71 36 chr9 49967958 49968239 -74107933 + B4 SINE B4 2 292 0 6 966 233 214 18 0 chr9 49968239 49968295 -74107877 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 966 395 211 9 26 chr9 49968307 49968654 -74107518 + (CA)n Simple_repeat Simple_repeat 1 340 0 6 966 726 323 15 26 chr9 49969687 49969951 -74106221 - MLT2B4 LTR ERVL -295 261 1 6 966 301 224 58 48 chr9 49970046 49970149 -74106023 - MTE2a LTR MaLR 0 379 276 6 966 292 341 8 30 chr9 49970167 49970300 -74105872 - MTE2a LTR MaLR -200 159 30 6 966 3384 40 0 8 chr9 49970863 49971262 -74104910 - MTA_Mm LTR MaLR 0 396 1 6 966 9371 36 1 0 chr9 49971262 49972359 -74103813 - MTA_Mm-int LTR MaLR 0 1098 1 6 966 3428 43 0 0 chr9 49972359 49972755 -74103417 - MTA_Mm LTR MaLR 0 396 1 6 966 409 214 6 6 chr9 49972992 49973152 -74103020 + (TG)n Simple_repeat Simple_repeat 1 160 0 6 966 820 260 40 74 chr9 49973192 49973491 -74102681 - B4 SINE B4 -2 290 2 6 966 748 274 234 7 chr9 49973786 49974171 -74102001 + MLT1F1 LTR MaLR 7 498 -71 6 966 1107 244 98 62 chr9 49974190 49974558 -74101614 + Lx8 LINE L1 7090 7470 -3 6 966 1437 75 43 0 chr9 49974625 49974812 -74101360 - B2_Mm2 SINE B2 0 195 1 6 966 2588 234 44 124 chr9 49974812 49976373 -74099799 - RMER1B Other Other -9 1057 1 6 966 205 281 15 51 chr9 49977418 49977522 -74098650 + MIRb SINE MIR 74 173 -95 6 966 300 205 49 49 chr9 49978656 49978738 -74097434 - PB1D10 SINE Alu -7 110 29 6 966 274 288 17 51 chr9 49978968 49979085 -74097087 + Arthur1B DNA Tip100 1102 1214 -11 6 966 219 305 0 0 chr9 49979821 49979880 -74096292 + CT-rich Low_complexity Low_complexity 3 61 0 6 966 24 0 0 0 chr9 49980205 49980229 -74095943 + AT_rich Low_complexity Low_complexity 1 24 0 6 966 1163 93 0 6 chr9 49980577 49980749 -74095423 + (GAA)n Simple_repeat Simple_repeat 1 171 0 6 966 495 0 0 0 chr9 49981203 49981258 -74094914 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 966 181 167 0 0 chr9 49981261 49981291 -74094881 + MIR SINE MIR 118 147 -61 6 966 331 273 53 26 chr9 49981687 49981800 -74094372 + PB1D7 SINE Alu 5 120 0 6 966 618 315 47 63 chr9 49981808 49982062 -74094110 + B4A SINE B4 2 251 -41 6 966 206 261 44 22 chr9 49982069 49982159 -74094013 + (CATA)n Simple_repeat Simple_repeat 1 92 0 6 966 1785 109 0 31 chr9 49983460 49983716 -74092456 - Lx4A LINE L1 -227 6831 6584 6 966 2262 154 41 5 chr9 49984568 49984959 -74091213 - MTC LTR MaLR 0 421 17 6 966 446 333 7 7 chr9 49985282 49985436 -74090736 + MIR SINE MIR 39 192 -70 6 966 420 71 0 0 chr9 49985486 49985542 -74090630 + (TATG)n Simple_repeat Simple_repeat 1 56 0 6 966 393 318 56 63 chr9 49986149 49986401 -74089771 - ORR1E LTR MaLR -11 348 99 6 966 245 244 158 0 chr9 49986495 49986577 -74089595 - ORR1E LTR MaLR -281 98 4 6 966 336 119 0 0 chr9 49986583 49986642 -74089530 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 6 966 198 0 0 0 chr9 49986642 49986664 -74089508 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 966 204 152 0 21 chr9 49986889 49986936 -74089236 + (TAA)n Simple_repeat Simple_repeat 1 46 0 6 966 700 258 9 57 chr9 49987043 49987253 -74088919 - B3 SINE B2 0 216 17 6 966 200 391 88 4 chr9 49987561 49987823 -74088349 + L3 LINE CR1 3334 3617 -872 6 966 1466 174 98 48 chr9 49988715 49989052 -74087120 + ORR1B1 LTR MaLR 41 394 0 6 966 201 281 16 0 chr9 49989573 49989637 -74086535 + CT-rich Low_complexity Low_complexity 2 66 0 7 966 681 36 0 0 chr9 49989909 49989993 -74086179 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 966 189 0 0 0 chr9 49990303 49990324 -74085848 + (A)n Simple_repeat Simple_repeat 1 21 0 7 966 495 0 0 0 chr9 49990547 49990602 -74085570 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 966 826 147 11 28 chr9 49990603 49990888 -74085284 + (CA)n Simple_repeat Simple_repeat 1 279 0 7 966 1100 287 62 30 chr9 49990961 49991331 -74084841 + Lx8 LINE L1 7092 7473 0 7 966 321 323 113 24 chr9 49992188 49992356 -74083816 - MER74A LTR ERVL -355 203 21 7 966 1619 224 35 24 chr9 49993422 49993792 -74082380 + MTEb LTR MaLR 6 379 0 7 966 731 226 0 0 chr9 49995399 49995532 -74080640 + B1_Mur1 SINE Alu 2 134 -15 7 966 225 178 0 0 chr9 49995532 49995577 -74080595 + (ATG)n Simple_repeat Simple_repeat 1 45 0 7 966 270 0 0 0 chr9 49996616 49996646 -74079526 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 966 621 284 62 95 chr9 49997231 49997600 -74078572 - ORR1E LTR MaLR -2 357 1 7 966 1044 256 53 39 chr9 49997789 49998074 -74078098 + B4 SINE B4 2 290 -2 7 966 282 56 0 0 chr9 49999580 49999616 -74076556 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 7 966 238 137 13 27 chr9 49999616 49999683 -74076489 + T-rich Low_complexity Low_complexity 3 68 0 7 966 639 144 0 0 chr9 50000033 50000172 -74076000 + (TC)n Simple_repeat Simple_repeat 1 139 0 1 966 392 351 67 73 chr9 50001162 50001334 -74074838 - L2c LINE L2 -15 3372 3206 2 966 2154 139 66 9 chr9 50001334 50001681 -74074491 + ORR1B2 LTR MaLR 1 367 0 3 966 392 351 67 73 chr9 50001681 50001837 -74074335 - L2c LINE L2 -182 3205 3046 2 966 198 0 0 0 chr9 50001852 50001874 -74074298 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 966 406 0 37 0 chr9 50001874 50001927 -74074245 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 966 637 312 42 72 chr9 50002143 50002478 -74073694 - ORR1E LTR MaLR -34 325 1 6 966 692 250 63 36 chr9 50003756 50004009 -74072163 + RLTR11B LTR ERVK 3 262 -191 7 966 180 77 0 0 chr9 50004014 50004040 -74072132 + (CAGAGA)n Simple_repeat Simple_repeat 4 29 0 8 966 278 266 35 52 chr9 50004253 50004368 -74071804 + MLT1J LTR MaLR 362 474 -38 9 966 513 32 0 0 chr9 50004803 50004866 -74071306 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 966 8319 115 63 58 chr9 50005159 50005440 -74070732 - RLTR21 LTR ERVK 0 1572 1290 1 966 324 0 0 0 chr9 50005440 50005476 -74070696 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 966 8319 115 63 58 chr9 50005476 50006757 -74069415 - RLTR21 LTR ERVK -283 1289 2 1 966 931 150 6 6 chr9 50007133 50007307 -74068865 + CT-rich Low_complexity Low_complexity 1 174 0 1 966 323 325 44 18 chr9 50007321 50007486 -74068686 + MLT1F LTR MaLR 177 342 -218 1 966 697 292 80 15 chr9 50007591 50007855 -74068317 + B4 SINE B4 2 282 -10 1 966 438 20 0 0 chr9 50007872 50007923 -74068249 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 966 456 349 35 6 chr9 50007959 50008132 -74068040 + MLT1F LTR MaLR 337 514 -34 1 966 735 265 93 26 chr9 50008370 50008818 -74067354 - MLT1D LTR MaLR 0 505 1 1 966 276 309 0 31 chr9 50009113 50009210 -74066962 - MIR SINE MIR -109 153 60 1 966 1176 250 19 29 chr9 50009489 50009798 -74066374 - MTE2b LTR MaLR -34 345 40 1 966 185 326 35 0 chr9 50010313 50010399 -74065773 - MIRc SINE MIR -129 139 51 2 966 240 164 45 0 chr9 50010995 50011062 -74065110 + CT-rich Low_complexity Low_complexity 1 70 0 2 966 855 70 0 0 chr9 50012730 50012845 -74063327 + (TTC)n Simple_repeat Simple_repeat 3 117 0 2 966 243 308 13 13 chr9 50012845 50012924 -74063248 + CT-rich Low_complexity Low_complexity 1 79 0 2 966 275 290 0 0 chr9 50012955 50013024 -74063148 - ID4_ SINE ID -14 69 1 2 966 319 320 29 0 chr9 50013024 50013127 -74063045 - B1F SINE Alu 0 149 44 2 966 190 271 33 33 chr9 50013171 50013232 -74062940 + MIR SINE MIR 100 160 -102 2 966 405 287 23 23 chr9 50013690 50013822 -74062350 - MIR3 SINE MIR -47 161 30 2 966 903 248 19 37 chr9 50014344 50014558 -74061614 + ID_B1 SINE B4 1 210 -14 2 966 269 362 35 56 chr9 50014914 50015145 -74061027 - L3 LINE CR1 -19 4470 4245 2 966 260 226 48 0 chr9 50015159 50015221 -74060951 - RMER30 DNA MER1_type 0 202 138 3 966 282 252 59 20 chr9 50016264 50016365 -74059807 + MLT2B3 LTR ERVL 5 109 -445 3 966 1174 262 7 45 chr9 50017294 50017602 -74058570 + MTEa LTR MaLR 4 299 -80 3 966 322 301 29 29 chr9 50017762 50017902 -74058270 - B1F SINE Alu -5 144 5 3 966 428 315 133 32 chr9 50018051 50018789 -74057383 - L2 LINE L2 -565 2854 2043 3 966 182 255 59 0 chr9 50018991 50019042 -74057130 - L2 LINE L2 -1635 1784 1731 3 966 693 280 124 46 chr9 50019050 50019292 -74056880 + MTEb LTR MaLR 3 243 -136 3 966 774 32 0 0 chr9 50019292 50019385 -74056787 + (CCA)n Simple_repeat Simple_repeat 1 93 0 3 966 693 280 124 46 chr9 50019385 50019490 -74056682 + MTEb LTR MaLR 244 376 -3 3 966 528 16 0 0 chr9 50020485 50020546 -74055626 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 966 727 212 0 74 chr9 50020549 50020712 -74055460 - B3A SINE B2 -46 152 2 3 966 235 269 111 56 chr9 50021173 50021299 -74054873 - Charlie22a DNA MER1_type -269 222 90 3 966 616 108 36 0 chr9 50022348 50022487 -74053685 + (CA)n Simple_repeat Simple_repeat 2 145 0 4 966 761 239 259 13 chr9 50024911 50025212 -74050960 + MTE2b LTR MaLR 5 379 0 4 966 387 0 0 0 chr9 50025522 50025565 -74050607 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 966 1728 285 35 10 chr9 50025683 50026172 -74050000 + Lx6 LINE L1 6947 7447 -13 4 966 257 325 13 0 chr9 50026530 50026607 -74049565 + BC1_Mm scRNA scRNA 2 79 -73 4 966 280 225 242 23 chr9 50026949 50027040 -74049132 + MER96B DNA hAT 77 188 -229 4 966 207 0 0 0 chr9 50027040 50027063 -74049109 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 966 280 225 242 23 chr9 50027063 50027103 -74049069 + MER96B DNA hAT 189 237 -180 4 966 278 294 93 22 chr9 50027247 50027386 -74048786 + LTR79 LTR ERVL 21 169 -358 4 966 1054 272 57 82 chr9 50027770 50028115 -74048057 + RMER5 LTR ERV1 5 332 -202 4 966 1771 172 169 0 chr9 50028115 50028452 -74047720 + ORR1B1 LTR MaLR 1 394 0 4 966 1054 272 57 82 chr9 50028452 50028631 -74047541 + RMER5 LTR ERV1 333 516 -18 4 966 409 377 59 47 chr9 50029086 50029490 -74046682 - MLT1J2 LTR MaLR 0 448 40 5 966 661 234 35 10 chr9 50029578 50029866 -74046306 - RMER4B LTR ERVK 0 585 256 5 966 1233 41 0 0 chr9 50030164 50030311 -74045861 + B1_Mus2 SINE Alu 1 147 0 5 966 307 240 109 10 chr9 50031728 50031829 -74044343 - MLT2C2 LTR ERVL -351 113 3 5 966 247 316 6 45 chr9 50032546 50032702 -74043470 + (CATA)n Simple_repeat Simple_repeat 2 151 0 5 966 180 0 0 0 chr9 50032721 50032741 -74043431 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 966 324 0 0 0 chr9 50032741 50032776 -74043396 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 966 207 254 28 0 chr9 50033119 50033190 -74042982 + C-rich Low_complexity Low_complexity 6 78 0 5 966 1190 55 0 0 chr9 50033681 50033827 -74042345 + B1_Mus1 SINE Alu 3 148 0 5 966 433 189 33 0 chr9 50033894 50034016 -74042156 + (CACCAT)n Simple_repeat Simple_repeat 4 129 0 5 966 1405 253 56 11 chr9 50034118 50034478 -74041694 - MTEb LTR MaLR -3 376 1 6 966 186 306 0 0 chr9 50034723 50034795 -74041377 + L3b LINE CR1 220 291 -191 6 966 536 282 123 39 chr9 50035413 50035745 -74040427 - MER82 DNA MER2_type -108 545 186 6 966 348 352 32 0 chr9 50035750 50035875 -74040297 + ORR1E LTR MaLR 4 132 -227 6 966 253 243 103 86 chr9 50036049 50036166 -74040006 - MER82 DNA MER2_type -480 173 55 6 966 1017 264 84 31 chr9 50036749 50037108 -74039064 - MTE2a LTR MaLR -1 378 1 6 966 891 0 0 0 chr9 50037934 50038033 -74038139 + (GAA)n Simple_repeat Simple_repeat 1 99 0 6 966 512 239 30 23 chr9 50038607 50038740 -74037432 + MER82 DNA MER2_type 20 153 -500 6 966 187 300 29 0 chr9 50038974 50039044 -74037128 + L2 LINE L2 2896 2967 -452 6 966 297 359 83 29 chr9 50039139 50039417 -74036755 - MLT1A0 LTR MaLR 0 365 73 6 966 533 318 52 30 chr9 50040426 50040656 -74035516 + MIRb SINE MIR 34 268 0 6 966 289 301 119 52 chr9 50041772 50041965 -74034207 + MLT1N2 LTR MaLR 266 471 -91 7 966 198 0 0 0 chr9 50042212 50042234 -74033938 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 7 966 1183 167 18 26 chr9 50042428 50042655 -74033517 - URR1B DNA MER1_type 0 225 1 7 966 548 297 18 102 chr9 50043216 50043316 -74032856 - B4 SINE B4 0 292 206 7 966 180 0 0 0 chr9 50043316 50043336 -74032836 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 7 966 548 297 18 102 chr9 50043336 50043460 -74032712 - B4 SINE B4 -87 205 87 7 966 243 0 0 0 chr9 50043460 50043487 -74032685 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 7 966 1342 183 5 0 chr9 50045013 50045237 -74030935 + URR1B DNA MER1_type 1 225 0 7 966 3339 213 147 8 chr9 50045237 50046069 -74030103 + Lx7 LINE L1 6750 7696 0 7 966 298 339 93 59 chr9 50046084 50046288 -74029884 + MLT1J LTR MaLR 211 421 -91 7 966 261 163 0 0 chr9 50046289 50046338 -74029834 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 966 546 133 0 0 chr9 50046371 50046461 -74029711 + (TG)n Simple_repeat Simple_repeat 2 91 0 8 966 434 332 33 62 chr9 50046669 50046913 -74029259 - MLT1D LTR MaLR 0 505 269 8 966 252 284 50 40 chr9 50046951 50047050 -74029122 - MLT1D LTR MaLR -337 168 69 8 966 315 0 0 0 chr9 50047312 50047347 -74028825 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 966 369 279 0 18 chr9 50047420 50047533 -74028639 - ID_B1 SINE B4 -32 192 82 8 966 293 241 10 94 chr9 50048343 50048439 -74027733 + MIRb SINE MIR 98 185 -83 8 966 234 229 108 0 chr9 50049453 50049536 -74026636 - MIR SINE MIR -126 136 45 8 966 345 109 0 0 chr9 50049954 50050009 -74026163 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 966 2076 103 112 25 chr9 50050459 50050826 -74025346 - Lx3_Mus LINE L1 -2 7007 6609 8 966 219 103 0 0 chr9 50050826 50050865 -74025307 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 966 1106 204 193 26 chr9 50050893 50051240 -74024932 - MTD LTR MaLR -2 417 13 8 966 277 327 27 45 chr9 50051303 50051415 -74024757 - RMER20B LTR ERVK -36 591 482 9 966 746 220 76 27 chr9 50051445 50051669 -74024503 - RMER20B LTR ERVK -265 362 128 9 966 202 75 24 48 chr9 50051793 50051835 -74024337 + (CCCCCA)n Simple_repeat Simple_repeat 1 41 0 9 966 279 281 129 29 chr9 50052440 50052579 -74023593 + L1MC LINE L1 5627 5779 -2103 9 966 414 0 0 0 chr9 50054179 50054225 -74021947 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 966 327 25 0 0 chr9 50054225 50054264 -74021908 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 966 246 32 0 0 chr9 50054445 50054476 -74021696 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 9 966 268 273 29 79 chr9 50054614 50054753 -74021419 - Lx8 LINE L1 -2 7471 7340 9 966 615 27 0 0 chr9 50055412 50055485 -74020687 + (TC)n Simple_repeat Simple_repeat 2 74 0 9 966 1582 263 73 35 chr9 50056800 50057375 -74018797 + L1MB8 LINE L1 5574 6170 -8 9 966 297 0 0 0 chr9 50057499 50057532 -74018640 + (GA)n Simple_repeat Simple_repeat 1 33 0 9 966 387 0 0 0 chr9 50057536 50057579 -74018593 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 966 234 207 0 0 chr9 50060485 50060543 -74015629 + GA-rich Low_complexity Low_complexity 1 58 0 1 966 638 341 48 70 chr9 50060992 50061392 -74014780 + MLT1C LTR MaLR 6 396 -71 1 966 878 211 80 5 chr9 50061750 50061950 -74014222 - B3 SINE B2 0 216 2 1 966 192 77 0 0 chr9 50062409 50062435 -74013737 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1 966 299 294 43 0 chr9 50062954 50063046 -74013126 + MER3 DNA MER1_type 108 203 -6 1 966 459 0 0 0 chr9 50063098 50063149 -74013023 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 966 873 118 0 0 chr9 50063560 50063729 -74012443 + (TC)n Simple_repeat Simple_repeat 2 170 0 1 966 516 45 0 0 chr9 50063729 50063795 -74012377 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 966 774 284 33 69 chr9 50063842 50064145 -74012027 - B4 SINE B4 0 292 1 1 966 1164 291 69 85 chr9 50065541 50066150 -74010022 - RLTR18 LTR ERVK -4 612 14 1 966 275 279 57 34 chr9 50066367 50066496 -74009676 + MLT1A1 LTR MaLR 237 408 0 1 966 318 320 84 22 chr9 50066510 50066689 -74009483 + L2 LINE L2 2437 2626 -793 1 966 754 222 247 9 chr9 50066689 50067021 -74009151 - MER57D LTR ERV1 0 411 1 1 966 293 307 62 16 chr9 50067029 50067158 -74009014 + L2 LINE L2 2681 2815 -604 1 966 345 321 18 94 chr9 50067453 50067728 -74008444 - MT2A LTR ERVL -2 531 278 1 966 279 0 0 0 chr9 50067776 50067807 -74008365 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 966 276 345 74 62 chr9 50067868 50068044 -74008128 - MTEa LTR MaLR -201 178 1 1 966 547 280 54 32 chr9 50068331 50068608 -74007564 - MER33 DNA MER1_type -4 320 38 1 966 778 123 7 14 chr9 50069013 50069153 -74007019 + (GGA)n Simple_repeat Simple_repeat 3 141 0 1 967 366 23 0 0 chr9 50069849 50069892 -74006280 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 967 542 223 0 157 chr9 50070429 50070626 -74005546 - RMER30 DNA MER1_type -36 166 1 1 967 1177 182 81 0 chr9 50071110 50071319 -74004853 + URR1A DNA MER1_type 1 226 0 1 967 1063 201 5 27 chr9 50071881 50072101 -74004071 + B3 SINE B2 2 216 0 1 967 34 0 0 0 chr9 50072147 50072181 -74003991 + AT_rich Low_complexity Low_complexity 1 34 0 1 967 243 371 55 41 chr9 50072290 50072436 -74003736 - MLT1J LTR MaLR -145 367 220 1 967 1215 319 34 67 chr9 50073708 50074470 -74001702 + L1MEg LINE L1 390 1126 -4958 1 967 495 0 0 0 chr9 50074534 50074589 -74001583 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 967 688 271 11 23 chr9 50074605 50074779 -74001393 + B3A SINE B2 1 172 -26 1 967 1109 235 0 23 chr9 50074805 50075023 -74001149 - B3 SINE B2 -3 213 1 1 967 400 312 41 31 chr9 50075090 50075285 -74000887 + L1M5 LINE L1 5272 5468 -705 1 967 837 230 55 72 chr9 50075488 50075800 -74000372 + RLTR11B LTR ERVK 13 313 -128 1 967 354 282 47 80 chr9 50075805 50076017 -74000155 + RLTR12B LTR ERVK 301 505 -23 1 967 23 33 0 0 chr9 50076107 50076137 -74000035 + AT_rich Low_complexity Low_complexity 1 30 0 1 967 922 199 34 115 chr9 50076188 50076391 -73999781 - RLTR25B LTR ERVK 0 1028 822 1 967 222 37 0 0 chr9 50076391 50076418 -73999754 + (CTCTG)n Simple_repeat Simple_repeat 1 27 0 1 967 922 199 34 115 chr9 50076418 50076510 -73999662 - RLTR25B LTR ERVK -207 821 757 1 967 221 128 43 0 chr9 50076620 50076667 -73999505 + A-rich Low_complexity Low_complexity 1 49 0 1 967 360 59 0 0 chr9 50076888 50076939 -73999233 + (A)n Simple_repeat Simple_repeat 1 51 0 1 967 4495 149 90 10 chr9 50076966 50077834 -73998338 - RLTR25A LTR ERVK -166 937 1 1 967 360 238 0 23 chr9 50077834 50077909 -73998263 + RSINE1 SINE B4 54 126 -39 1 967 252 0 0 0 chr9 50077940 50077968 -73998204 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 967 202 139 0 65 chr9 50078098 50078144 -73998028 + (TTATA)n Simple_repeat Simple_repeat 2 44 0 1 967 225 0 0 0 chr9 50078464 50078489 -73997683 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 967 1043 245 19 4 chr9 50078733 50078991 -73997181 - RLTR11A2 LTR ERVK -45 482 221 1 967 739 171 28 7 chr9 50079073 50079214 -73996958 + RMER19B LTR ERVK 1 144 -758 1 967 317 89 0 0 chr9 50079277 50079322 -73996850 + B3A SINE B2 5 49 -149 1 967 727 259 135 79 chr9 50080580 50080920 -73995252 + ORR1E LTR MaLR 1 359 0 1 967 2230 135 62 8 chr9 50081007 50081381 -73994791 + ORR1B1 LTR MaLR 1 394 0 1 967 1156 51 0 0 chr9 50081567 50081705 -73994467 + B1_Mus1 SINE Alu 2 139 -9 1 967 244 0 56 0 chr9 50081705 50081741 -73994431 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 967 1090 230 9 18 chr9 50081962 50082179 -73993993 - B3 SINE B2 0 216 2 1 967 249 108 0 0 chr9 50082441 50082478 -73993694 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 967 375 23 0 0 chr9 50082478 50082522 -73993650 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 967 721 251 19 33 chr9 50083242 50083456 -73992716 + B4A SINE B4 27 237 -55 1 967 435 222 27 36 chr9 50083591 50083703 -73992469 + B4A SINE B4 54 164 -128 1 967 907 264 26 29 chr9 50083714 50084058 -73992114 + RLTR15 LTR ERVK 1 343 -16 1 967 261 200 86 71 chr9 50084074 50084126 -73992046 + B4A SINE B4 214 270 -22 1 967 537 16 0 0 chr9 50084126 50084188 -73991984 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 967 261 200 86 71 chr9 50084188 50084205 -73991967 + B4A SINE B4 271 284 -8 1 967 32749 95 15 2 chr9 50084532 50090505 -73985667 + L1_Mus1 LINE L1 553 6650 -7 1 967 5634 216 77 32 chr9 50090541 50091977 -73984195 + Lx9 LINE L1 6145 7644 0 1 967 36146 35 0 0 chr9 50092060 50097733 -73978439 + L1Md_Gf LINE L1 1 5589 -297 1 967 9194 4 0 0 chr9 50097733 50098729 -73977443 + L1Md_T LINE L1 5587 6582 0 1 967 1281 270 70 10 chr9 50099037 50099437 -73976735 + Lx8 LINE L1 6927 7350 -123 1 967 306 0 0 0 chr9 50099777 50099811 -73976361 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 967 909 289 45 56 chr9 50100451 50100807 -73975365 - ORR1E LTR MaLR -6 353 2 1 967 1971 147 16 27 chr9 50100889 50101254 -73974918 + ORR1B1 LTR MaLR 26 386 -8 1 967 345 47 0 0 chr9 50101952 50101995 -73974177 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 967 323 44 22 0 chr9 50103115 50103160 -73973012 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 1 967 231 239 0 0 chr9 50103213 50103280 -73972892 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 967 824 337 85 22 chr9 50103342 50103507 -73972665 + MLT1J LTR MaLR 7 186 -326 1 967 3291 64 2 5 chr9 50103507 50103929 -73972243 + BGLII LTR ERVK 1 421 0 1 967 824 337 85 22 chr9 50103929 50104164 -73972008 + MLT1J LTR MaLR 187 432 -80 1 967 220 209 0 0 chr9 50104257 50104300 -73971872 + (AATTG)n Simple_repeat Simple_repeat 4 46 0 1 967 1878 116 6 59 chr9 50104454 50104775 -73971397 + ORR1A2 LTR MaLR 16 319 -8 1 967 3094 63 2 10 chr9 50104934 50105333 -73970839 - MTA_Mm LTR MaLR 0 396 1 1 967 643 281 30 25 chr9 50106003 50106204 -73969968 + B3 SINE B2 1 202 -14 1 967 222 37 0 0 chr9 50106204 50106231 -73969941 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1 967 883 284 34 62 chr9 50106383 50106740 -73969432 - ORR1E LTR MaLR 0 359 13 1 967 264 333 53 60 chr9 50106770 50107035 -73969137 + L2 LINE L2 2645 2907 -512 1 967 2511 47 0 0 chr9 50107328 50107628 -73968544 + L1Md_T LINE L1 6283 6582 0 1 967 1898 172 5 82 chr9 50108217 50108608 -73967564 - ORR1B1 LTR MaLR 0 394 1 1 967 271 305 80 101 chr9 50108741 50109178 -73966994 + L1MC4 LINE L1 7605 8032 -10 1 967 700 299 68 25 chr9 50110606 50110884 -73965288 + B4A SINE B4 2 291 -1 1 967 957 239 47 8 chr9 50110987 50111241 -73964931 - MTD LTR MaLR 0 419 156 1 967 386 134 15 0 chr9 50111241 50111308 -73964864 + RLTR26 LTR ERVK 3 70 -572 1 967 653 292 23 0 chr9 50111438 50111657 -73964515 - LTR40b LTR ERVL -233 229 6 1 967 768 214 147 13 chr9 50111983 50112215 -73963957 + MTD LTR MaLR 157 419 0 1 967 205 244 23 68 chr9 50112331 50112419 -73963753 - MER5A DNA MER1_type -101 88 5 1 967 2173 170 68 12 chr9 50112792 50113191 -73962981 - MTC LTR MaLR 0 421 1 1 967 604 286 40 76 chr9 50113357 50113479 -73962693 - MTEa LTR MaLR 0 379 265 1 967 524 36 48 0 chr9 50113479 50113562 -73962610 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 967 604 286 40 76 chr9 50113562 50113715 -73962457 - MTEa LTR MaLR -115 264 114 1 967 232 271 93 12 chr9 50115157 50115243 -73960929 + MIRb SINE MIR 160 252 -16 1 967 324 0 0 0 chr9 50115258 50115294 -73960878 + (A)n Simple_repeat Simple_repeat 1 36 0 1 967 2698 88 18 2 chr9 50115503 50115668 -73960504 + MTB_Mm LTR MaLR 5 168 -239 1 967 5463 15 0 0 chr9 50115668 50116274 -73959898 + L1Md_A LINE L1 5977 6582 0 1 967 2698 88 18 2 chr9 50116274 50116505 -73959667 + MTB_Mm LTR MaLR 169 406 -1 1 967 1294 220 73 87 chr9 50117106 50117474 -73958698 + MTE2b LTR MaLR 1 363 -16 1 967 274 282 199 6 chr9 50117781 50117947 -73958225 + L1M4 LINE L1 5537 5734 -710 1 967 405 0 0 0 chr9 50120081 50120126 -73956046 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 967 756 325 28 32 chr9 50120156 50120439 -73955733 - B4A SINE B4 -10 282 1 1 967 396 0 0 0 chr9 50120719 50120763 -73955409 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 967 686 269 74 22 chr9 50121223 50121493 -73954679 - RMER15 LTR ERVL 0 575 292 1 967 1625 166 48 85 chr9 50122163 50122539 -73953633 + ORR1C2 LTR MaLR 12 373 -11 1 967 324 103 0 0 chr9 50124326 50124384 -73951788 + (A)n Simple_repeat Simple_repeat 1 58 0 1 967 189 0 0 0 chr9 50126004 50126025 -73950147 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 2 967 667 217 14 0 chr9 50126069 50126207 -73949965 + B1F SINE Alu 1 140 -9 2 967 440 59 0 14 chr9 50126211 50126280 -73949892 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 967 180 254 118 15 chr9 50127355 50127423 -73948749 - MIRb SINE MIR -80 188 114 2 967 275 190 0 17 chr9 50127520 50127579 -73948593 + MTEb LTR MaLR 322 379 0 2 967 684 281 6 0 chr9 50128533 50128693 -73947479 + RSINE1 SINE B4 1 161 -4 2 967 369 0 0 0 chr9 50128694 50128735 -73947437 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 2 967 236 313 142 22 chr9 50130629 50130825 -73945347 + L1M6 LINE L1 1708 1933 -4563 2 967 3027 140 190 7 chr9 50130825 50131121 -73945051 - RMER6C LTR ERVK 0 690 376 2 967 693 36 0 0 chr9 50131121 50131205 -73944967 + (TC)n Simple_repeat Simple_repeat 2 85 0 2 967 3027 140 190 7 chr9 50131205 50131373 -73944799 - RMER6C LTR ERVK -315 375 126 2 967 471 18 0 0 chr9 50131373 50131429 -73944743 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 967 3027 140 190 7 chr9 50131429 50131546 -73944626 - RMER6C LTR ERVK -565 125 3 2 967 236 313 142 22 chr9 50131546 50131708 -73944464 + L1M6 LINE L1 1934 2109 -4387 2 967 1174 247 53 53 chr9 50131764 50131978 -73944194 + MTD LTR MaLR 5 214 -205 2 967 477 0 0 0 chr9 50131978 50132031 -73944141 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 967 1174 247 53 53 chr9 50132031 50132196 -73943976 + MTD LTR MaLR 215 384 -35 2 967 733 199 114 16 chr9 50133065 50133249 -73942923 + B3 SINE B2 15 216 0 2 967 254 235 58 14 chr9 50133274 50133343 -73942829 + ID4 SINE ID 10 81 -2 2 967 2224 68 19 0 chr9 50133574 50133883 -73942289 + ORR1A2 LTR MaLR 5 319 -8 2 967 312 294 49 61 chr9 50134099 50134196 -73941976 + L1MEg LINE L1 1275 1378 -4706 2 967 1203 68 0 0 chr9 50134196 50134343 -73941829 + B1_Mus1 SINE Alu 2 148 0 2 967 312 294 49 61 chr9 50134343 50134408 -73941764 + L1MEg LINE L1 1379 1435 -4649 2 967 878 189 123 15 chr9 50134416 50134630 -73941542 + Lx5 LINE L1 6795 7054 -4 2 967 880 225 28 23 chr9 50134862 50135076 -73941096 + ID_B1 SINE B4 1 215 -9 2 967 260 293 0 0 chr9 50135512 50135594 -73940578 + L1MEg LINE L1 1919 2000 -4084 2 967 2099 91 29 70 chr9 50135938 50136279 -73939893 - ORR1A2 LTR MaLR 0 327 1 2 967 531 82 0 0 chr9 50136457 50136530 -73939642 + (GGGA)n Simple_repeat Simple_repeat 2 74 0 2 967 345 256 93 11 chr9 50136760 50136942 -73939230 - L1MA8 LINE L1 -17 6274 6078 2 967 234 333 44 52 chr9 50137140 50137504 -73938668 + L1M5 LINE L1 2195 2555 -3660 2 967 585 0 0 0 chr9 50138042 50138107 -73938065 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 967 522 303 32 32 chr9 50138114 50138271 -73937901 - B3A SINE B2 -41 157 1 2 967 322 300 52 39 chr9 50138282 50138384 -73937788 - PB1D10 SINE Alu -11 106 6 2 967 276 255 87 78 chr9 50138682 50138797 -73937375 + PB1D10 SINE Alu 1 116 -1 2 967 210 324 0 0 chr9 50138941 50139015 -73937157 + CT-rich Low_complexity Low_complexity 1 74 0 2 967 21 36 0 0 chr9 50139136 50139164 -73937008 + AT_rich Low_complexity Low_complexity 1 28 0 2 967 414 0 0 0 chr9 50139587 50139633 -73936539 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 967 2001 176 77 28 chr9 50139681 50140541 -73935631 + RMER19B LTR ERVK 3 890 -12 2 967 575 326 97 42 chr9 50141057 50141563 -73934609 + L1ME1 LINE L1 5598 6131 -48 2 967 493 329 24 81 chr9 50141728 50141976 -73934196 + Lx8 LINE L1 6914 7147 -326 2 967 301 214 48 58 chr9 50141976 50142080 -73934092 - RMER19B LTR ERVK -190 712 610 2 967 563 299 71 30 chr9 50142080 50142346 -73933826 + Lx8 LINE L1 7195 7471 -2 2 967 654 174 0 0 chr9 50143340 50143478 -73932694 + (CACCAT)n Simple_repeat Simple_repeat 3 140 0 2 967 777 62 0 0 chr9 50143620 50143732 -73932440 + (TG)n Simple_repeat Simple_repeat 2 113 0 2 967 576 235 0 3 chr9 50144517 50144870 -73931302 + (CA)n Simple_repeat Simple_repeat 1 351 0 2 967 343 242 111 83 chr9 50145059 50145347 -73930825 + HAL1 LINE L1 972 1267 -1240 2 967 360 263 203 0 chr9 50145854 50145987 -73930185 + RSINE1 SINE B4 2 161 -4 2 967 21 0 0 0 chr9 50146035 50146056 -73930116 + AT_rich Low_complexity Low_complexity 1 21 0 2 967 5438 124 35 31 chr9 50146087 50146967 -73929205 - Lx4A LINE L1 -4 7054 6171 2 967 355 130 116 0 chr9 50146967 50147036 -73929136 + Lx4A LINE L1 6073 6149 -909 2 967 274 208 29 86 chr9 50147253 50147358 -73928814 - PB1D10 SINE Alu -1 116 18 2 967 318 305 8 33 chr9 50147619 50147741 -73928431 - LTR86A1 LTR ERVL -347 166 48 2 967 2031 126 3 0 chr9 50147742 50148059 -73928113 + ORR1A3 LTR MaLR 1 318 -8 2 967 198 0 0 0 chr9 50148307 50148329 -73927843 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 2 967 831 78 0 91 chr9 50148530 50148728 -73927444 + GA-rich Low_complexity Low_complexity 1 180 0 2 967 507 33 0 0 chr9 50148730 50148791 -73927381 + (GAAAA)n Simple_repeat Simple_repeat 1 61 0 2 967 326 250 142 54 chr9 50148794 50148942 -73927230 + RSINE1 SINE B4 3 163 -2 2 967 490 258 84 62 chr9 50149003 50149181 -73926991 + B3A SINE B2 1 182 -16 2 967 1019 225 9 28 chr9 50149367 50149582 -73926590 - B3 SINE B2 -4 212 2 2 967 985 312 86 19 chr9 50149886 50150363 -73925809 + Lx8 LINE L1 6963 7471 -2 2 967 212 231 38 19 chr9 50150405 50150458 -73925714 - ID4_ SINE ID -28 55 2 2 967 295 272 12 0 chr9 50152048 50152129 -73924043 + (TATG)n Simple_repeat Simple_repeat 3 84 0 2 967 523 310 19 0 chr9 50152145 50152300 -73923872 - B4A SINE B4 -2 290 133 2 967 285 29 0 0 chr9 50152300 50152334 -73923838 + (T)n Simple_repeat Simple_repeat 1 34 0 2 967 1756 166 96 69 chr9 50153136 50153499 -73922673 + ORR1D1 LTR MaLR 1 373 -1 2 967 399 298 35 14 chr9 50153615 50153758 -73922414 - LTR86A1 LTR ERVL -49 464 319 2 967 340 280 75 0 chr9 50153854 50153961 -73922211 + LTR50 LTR ERVL 1 115 -680 2 967 338 272 202 21 chr9 50154227 50154415 -73921757 + RMER15 LTR ERVL 337 558 -17 2 967 258 303 261 47 chr9 50154432 50154727 -73921445 + LTR50 LTR ERVL 114 478 -317 2 967 1425 106 35 56 chr9 50154727 50154958 -73921214 + URR1A DNA MER1_type 1 226 0 2 967 258 304 211 44 chr9 50154958 50155209 -73920963 + LTR50 LTR ERVL 318 681 -114 2 967 1152 180 76 24 chr9 50155400 50155650 -73920522 - MTD LTR MaLR -152 267 5 2 967 367 230 50 0 chr9 50155664 50155764 -73920408 + B4 SINE B4 118 222 -70 2 967 686 184 0 18 chr9 50155771 50155993 -73920179 + (CA)n Simple_repeat Simple_repeat 1 218 0 2 967 238 354 88 42 chr9 50156664 50156783 -73919389 + MIRb SINE MIR 18 141 -127 2 967 630 0 0 0 chr9 50156783 50156853 -73919319 + (TAAAA)n Simple_repeat Simple_repeat 5 74 0 2 967 238 354 88 42 chr9 50156853 50156972 -73919200 + MIRb SINE MIR 142 267 -1 2 967 448 253 25 14 chr9 50159494 50159655 -73916517 - L1MA4A LINE L1 -306 5985 5828 2 967 1389 245 39 36 chr9 50160481 50160851 -73915321 - MTE2b LTR MaLR -2 419 3 2 967 774 203 28 0 chr9 50161085 50161228 -73914944 + B1_Mur4 SINE Alu 1 147 -3 2 967 309 303 56 56 chr9 50161460 50161656 -73914516 - HAL1 LINE L1 -5 2502 2307 2 967 1159 60 0 6 chr9 50161648 50161803 -73914369 + L1Md_T LINE L1 5454 5615 -559 2 967 8662 30 0 5 chr9 50161803 50162804 -73913368 + L1Md_T LINE L1 5587 6582 0 2 967 555 292 159 33 chr9 50162964 50163485 -73912687 - HAL1 LINE L1 -409 2098 1512 2 967 552 231 133 44 chr9 50163996 50164177 -73911995 - MLT1F2 LTR MaLR -3 557 361 2 967 1149 264 78 34 chr9 50164186 50164598 -73911574 - MLT1F2-int LTR MaLR -952 537 108 2 967 522 0 0 0 chr9 50164697 50164755 -73911417 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 967 818 304 86 96 chr9 50164775 50165301 -73910871 - MLT1F2 LTR MaLR -40 587 3 2 967 196 330 21 42 chr9 50165792 50165887 -73910285 - L2c LINE L2 -25 3362 3270 2 967 279 0 0 0 chr9 50165952 50165983 -73910189 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 967 294 29 0 0 chr9 50165983 50166017 -73910155 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 967 1559 99 8 2 chr9 50166128 50166521 -73909651 + (TG)n Simple_repeat Simple_repeat 1 395 0 2 967 369 0 0 0 chr9 50166521 50166561 -73909611 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 967 324 78 0 38 chr9 50166650 50166703 -73909469 - HAL1-3A_ME LINE L1 -833 2025 1975 2 967 499 226 13 0 chr9 50166730 50166889 -73909283 + (TG)n Simple_repeat Simple_repeat 1 161 0 2 967 216 0 0 0 chr9 50167045 50167069 -73909103 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 967 180 267 50 62 chr9 50168107 50168187 -73907985 + L2 LINE L2 163 241 -3178 2 967 716 268 40 20 chr9 50168685 50168883 -73907289 - MTEa LTR MaLR 0 379 178 2 967 2257 128 88 65 chr9 50168887 50169285 -73906887 + RLTR16 LTR ERVK 6 413 -92 2 967 405 0 0 0 chr9 50169285 50169330 -73906842 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 967 2257 128 88 65 chr9 50169330 50169374 -73906798 + RLTR16 LTR ERVK 414 457 -48 2 967 447 240 9 74 chr9 50169411 50169519 -73906653 - MTEa LTR MaLR -212 167 67 2 967 367 214 0 0 chr9 50169897 50169970 -73906202 - MTEa LTR MaLR -306 73 1 2 967 1144 251 30 63 chr9 50171291 50171457 -73904715 - ORR1E LTR MaLR -6 353 192 2 967 438 36 0 0 chr9 50171457 50171513 -73904659 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 967 1144 251 30 63 chr9 50171513 50171711 -73904461 - ORR1E LTR MaLR -168 191 2 2 967 251 286 331 8 chr9 50171919 50172046 -73904126 + MLT1F2 LTR MaLR 393 560 0 2 967 187 321 206 49 chr9 50172079 50172531 -73903641 + L2 LINE L2 2388 2910 -509 2 967 237 287 33 33 chr9 50173007 50173097 -73903075 - LTR16A LTR ERVL -342 109 20 2 967 292 212 138 0 chr9 50173203 50173283 -73902889 + L2a LINE L2 3332 3422 -4 2 967 804 285 89 50 chr9 50173916 50174197 -73901975 + B4A SINE B4 1 292 0 2 967 273 246 0 0 chr9 50174439 50174496 -73901676 - ID_B1 SINE B4 -18 206 150 2 967 207 167 0 0 chr9 50174515 50174557 -73901615 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 967 350 337 53 29 chr9 50174908 50175079 -73901093 - ORR1E LTR MaLR -182 177 3 2 967 272 102 0 20 chr9 50175150 50175200 -73900972 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 967 1997 151 90 44 chr9 50175319 50175706 -73900466 - MTB_Mm LTR MaLR -1 406 2 2 967 281 346 103 31 chr9 50176421 50176645 -73899527 + MIRb SINE MIR 27 266 -2 2 967 366 173 0 0 chr9 50176844 50176919 -73899253 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 967 29 47 0 0 chr9 50176979 50177022 -73899150 + AT_rich Low_complexity Low_complexity 1 43 0 2 967 189 0 0 0 chr9 50177298 50177319 -73898853 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 3 967 238 284 65 57 chr9 50177512 50177635 -73898537 - MIRc SINE MIR -141 127 4 3 967 348 111 0 0 chr9 50177850 50177904 -73898268 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 967 224 220 20 0 chr9 50177977 50178027 -73898145 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 967 527 263 98 115 chr9 50178027 50178323 -73897849 - B4 SINE B4 0 292 2 3 967 457 330 124 10 chr9 50178324 50178517 -73897655 - B4A SINE B4 -66 226 12 3 967 213 230 31 47 chr9 50179027 50179091 -73897081 - L3b LINE CR1 -127 355 293 3 967 211 289 81 20 chr9 50180085 50180184 -73895988 + MIRc SINE MIR 46 150 -118 3 967 856 248 172 88 chr9 50180198 50180529 -73895643 - MTEa LTR MaLR -3 376 18 3 967 255 291 145 48 chr9 50180918 50181084 -73895088 - MIRc SINE MIR -43 225 44 3 967 278 297 39 10 chr9 50181088 50181190 -73894982 - MER33 DNA MER1_type 0 324 220 3 967 250 273 8 76 chr9 50181728 50181847 -73894325 + L2c LINE L2 3269 3379 -8 3 967 1055 265 103 23 chr9 50182984 50183152 -73893020 - MLT1B LTR MaLR -12 378 199 3 967 390 21 0 0 chr9 50183152 50183199 -73892973 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 967 1055 265 103 23 chr9 50183199 50183378 -73892794 - MLT1B LTR MaLR -192 198 3 3 967 861 312 36 44 chr9 50183554 50183943 -73892229 - MT2A LTR ERVL -69 464 79 3 967 559 223 181 0 chr9 50183951 50184117 -73892055 - Lx8 LINE L1 -869 6604 6409 3 967 774 272 118 13 chr9 50184107 50184413 -73891759 + L1ME4a LINE L1 5327 5664 -515 3 967 978 257 132 56 chr9 50184449 50184844 -73891328 - Lx8 LINE L1 -359 7114 6690 3 967 563 250 8 8 chr9 50185069 50185186 -73890986 - PB1D10 SINE Alu 0 117 1 3 967 678 58 0 0 chr9 50185446 50185533 -73890639 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 967 195 167 0 0 chr9 50185559 50185601 -73890571 + GA-rich Low_complexity Low_complexity 1 42 0 3 967 732 312 19 24 chr9 50185601 50185811 -73890361 + B4 SINE B4 84 292 0 3 967 446 155 9 0 chr9 50185856 50185972 -73890200 + GA-rich Low_complexity Low_complexity 1 117 0 3 967 439 238 19 87 chr9 50186142 50186303 -73889869 + L1ME4a LINE L1 5753 5902 -222 3 967 288 0 0 0 chr9 50186339 50186371 -73889801 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 967 498 17 0 0 chr9 50186578 50186637 -73889535 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 3 967 3432 61 28 0 chr9 50186996 50187420 -73888752 + RLTR10C LTR ERVK 1 436 0 3 967 5002 59 0 14 chr9 50187929 50188592 -73887580 - L1Md_F2 LINE L1 0 6582 5955 3 967 5192 20 0 0 chr9 50188592 50189267 -73886905 + L1Md_F2 LINE L1 5303 5977 -605 3 967 678 276 93 55 chr9 50189475 50189928 -73886244 - Charlie4 DNA MER1_type -46 1915 1446 3 967 475 67 0 39 chr9 50189931 50190009 -73886163 + (TATG)n Simple_repeat Simple_repeat 1 75 0 3 967 813 370 49 9 chr9 50190127 50190577 -73885595 - Charlie24 DNA MER1_type -585 1865 1398 3 967 229 320 137 16 chr9 50190834 50190958 -73885214 - Charlie24 DNA MER1_type -1114 1336 1198 3 967 290 242 99 126 chr9 50190985 50191136 -73885036 - ORR1E LTR MaLR -212 147 1 3 967 21 0 0 0 chr9 50192284 50192305 -73883867 + GC_rich Low_complexity Low_complexity 1 21 0 3 967 615 301 35 20 chr9 50192552 50192755 -73883417 - Charlie4 DNA MER1_type -1682 279 74 3 967 650 285 41 0 chr9 50192767 50192939 -73883233 + B3A SINE B2 2 180 -18 3 967 246 148 0 0 chr9 50192983 50193037 -73883135 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 967 594 134 82 2 chr9 50193037 50193150 -73883022 + ORR1D1 LTR MaLR 169 297 -87 3 967 270 83 0 0 chr9 50193141 50193177 -73882995 - ORR1C2 LTR MaLR -6 378 343 3 967 3295 172 48 14 chr9 50193177 50193798 -73882374 + RLTR26 LTR ERVK 1 642 0 3 967 1810 200 23 9 chr9 50193798 50194141 -73882031 - ORR1C2 LTR MaLR -36 348 1 3 967 229 125 50 0 chr9 50194141 50194179 -73881993 + ORR1D1 LTR MaLR 270 309 -65 3 967 360 0 0 0 chr9 50194351 50194391 -73881781 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 967 1845 256 92 16 chr9 50194748 50195382 -73880790 - L1MA5 LINE L1 -5 6295 5614 3 967 1821 178 86 0 chr9 50195382 50195720 -73880452 + ORR1D1 LTR MaLR 1 367 -7 3 967 214 222 172 69 chr9 50195960 50196047 -73880125 - L3 LINE CR1 -3604 885 790 3 967 392 0 21 0 chr9 50196306 50196354 -73879818 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 967 300 226 0 0 chr9 50196357 50196419 -73879753 - ID4_ SINE ID -21 62 1 3 967 538 272 155 36 chr9 50197684 50197999 -73878173 - MLT1A1 LTR MaLR -44 364 1 3 967 338 253 0 12 chr9 50198286 50198366 -73877806 - ID4_ SINE ID 0 83 5 3 967 203 240 0 20 chr9 50199120 50199171 -73877001 + MIRc SINE MIR 107 156 -112 3 967 567 0 0 0 chr9 50199918 50199981 -73876191 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 3 967 2275 93 9 24 chr9 50200452 50200476 -73875696 - ORR1A2 LTR MaLR 0 327 309 3 120 3524 25 2 0 chr9 50200476 50200871 -73875301 + MTA_Mm LTR MaLR 1 396 0 3 968 9712 19 2 0 chr9 50200871 50201967 -73874205 + MTA_Mm-int LTR MaLR 1 1098 0 3 968 3524 25 2 0 chr9 50201967 50202362 -73873810 + MTA_Mm LTR MaLR 1 396 0 3 968 2275 93 9 24 chr9 50202362 50202667 -73873505 - ORR1A2 LTR MaLR -19 308 3 3 968 1404 156 205 3 chr9 50202667 50202947 -73873225 + ORR1B2 LTR MaLR 23 359 -8 3 968 560 307 34 97 chr9 50203112 50203379 -73872793 + ORR1E LTR MaLR 3 252 -107 3 968 677 276 16 47 chr9 50203874 50204064 -73872108 + ORR1E LTR MaLR 160 343 -16 3 968 286 344 8 7 chr9 50204509 50204670 -73871502 + L1MA4A LINE L1 5781 5938 -362 3 968 1071 226 81 29 chr9 50204967 50205240 -73870932 + MTD LTR MaLR 133 419 0 3 968 2232 191 2 43 chr9 50205352 50205790 -73870382 + MTC LTR MaLR 2 421 0 3 968 1116 96 0 0 chr9 50205794 50205971 -73870201 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 3 968 261 0 0 0 chr9 50205971 50206000 -73870172 + (CTTG)n Simple_repeat Simple_repeat 4 32 0 3 968 1071 107 0 0 chr9 50206000 50206178 -73869994 + (TTGG)n Simple_repeat Simple_repeat 2 179 0 3 968 257 389 85 14 chr9 50206702 50206913 -73869259 - MIR SINE MIR -4 258 33 3 968 996 146 0 0 chr9 50208231 50208409 -73867763 + (TCC)n Simple_repeat Simple_repeat 2 179 0 3 968 222 122 0 0 chr9 50208657 50208683 -73867489 + (T)n Simple_repeat Simple_repeat 1 26 0 3 968 1745 16 0 0 chr9 50208683 50208876 -73867296 - B2_Mm1a SINE B2 0 193 1 3 968 222 122 0 0 chr9 50208876 50208890 -73867282 + (T)n Simple_repeat Simple_repeat 1 14 0 3 968 717 211 21 0 chr9 50208911 50209053 -73867119 - B1F2 SINE Alu 0 149 5 3 968 711 35 0 0 chr9 50209158 50209244 -73866928 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 968 2545 131 57 8 chr9 50209275 50209676 -73866496 - MTC LTR MaLR 0 421 1 3 968 229 264 23 0 chr9 50209749 50209770 -73866402 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 3 968 360 0 0 0 chr9 50209770 50209810 -73866362 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 968 229 264 23 0 chr9 50209810 50209875 -73866297 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 3 968 640 280 16 138 chr9 50209894 50210147 -73866025 - ID_B1 SINE B4 0 224 3 3 968 193 75 0 48 chr9 50210163 50210205 -73865967 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 3 968 525 76 0 0 chr9 50211644 50211723 -73864449 + (CATA)n Simple_repeat Simple_repeat 2 80 0 3 968 308 339 61 43 chr9 50211820 50212015 -73864157 - MIR SINE MIR -68 200 4 3 968 686 216 29 82 chr9 50212152 50212359 -73863813 + B3A SINE B2 2 197 -1 3 968 776 289 19 14 chr9 50212792 50213003 -73863169 - B4A SINE B4 -55 237 26 3 968 662 271 40 124 chr9 50213566 50213840 -73862332 + B4 SINE B4 42 292 0 3 968 366 310 0 0 chr9 50213842 50214013 -73862159 + (CA)n Simple_repeat Simple_repeat 1 171 0 3 968 722 255 166 17 chr9 50214458 50214857 -73861315 - Tigger7 DNA MER2_type -166 384 70 3 968 1006 316 76 51 chr9 50214893 50215112 -73861060 + MER92B LTR ERV1 72 278 -358 3 968 931 237 23 5 chr9 50215112 50215328 -73860844 + ID_B1 SINE B4 5 224 0 3 968 1006 316 76 51 chr9 50215328 50215621 -73860551 + MER92B LTR ERV1 279 596 -40 3 968 1994 125 57 73 chr9 50215662 50216016 -73860156 + ORR1B1 LTR MaLR 47 394 0 3 968 310 288 75 123 chr9 50217342 50217710 -73858462 + ORR1E LTR MaLR 4 366 -13 3 968 286 236 59 109 chr9 50217731 50217850 -73858322 + MIR SINE MIR 103 215 -47 3 968 676 289 74 152 chr9 50218423 50218631 -73857541 + B4 SINE B4 2 209 -83 3 968 341 264 106 20 chr9 50218631 50218782 -73857390 + RSINE1 SINE B4 2 165 0 3 968 676 289 74 152 chr9 50218782 50218883 -73857289 + B4 SINE B4 210 287 -5 3 968 417 39 0 0 chr9 50218894 50218945 -73857227 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 968 419 254 103 49 chr9 50219213 50219400 -73856772 - MTEa LTR MaLR -7 372 174 3 968 1537 62 16 0 chr9 50219421 50219613 -73856559 - B2_Mm2 SINE B2 0 195 1 3 968 3370 197 65 54 chr9 50219883 50220636 -73855536 + RMER13B LTR ERVK 6 766 -142 3 968 183 42 0 0 chr9 50220636 50220660 -73855512 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 3 968 355 342 77 0 chr9 50221727 50221844 -73854328 + ID_B1 SINE B4 7 132 -92 3 968 420 20 0 0 chr9 50222022 50222071 -73854101 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 968 279 0 0 0 chr9 50223477 50223508 -73852664 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 968 203 94 78 0 chr9 50223622 50223686 -73852486 + (TTTG)n Simple_repeat Simple_repeat 1 69 0 3 968 1166 82 0 7 chr9 50223686 50223834 -73852338 - B1_Mus1 SINE Alu -1 147 1 3 968 260 188 21 0 chr9 50223856 50223904 -73852268 + GA-rich Low_complexity Low_complexity 1 49 0 3 968 1010 117 0 22 chr9 50223904 50224087 -73852085 + (GAA)n Simple_repeat Simple_repeat 1 179 0 3 968 189 214 0 0 chr9 50224087 50224129 -73852043 + G-rich Low_complexity Low_complexity 1 42 0 3 968 750 119 0 0 chr9 50224126 50224237 -73851935 + (GAA)n Simple_repeat Simple_repeat 3 113 0 3 968 1340 62 6 0 chr9 50224237 50224416 -73851756 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 968 750 119 0 0 chr9 50224416 50224422 -73851750 + (GAA)n Simple_repeat Simple_repeat 3 8 0 4 968 242 360 13 0 chr9 50224693 50224768 -73851404 + MLT1J LTR MaLR 64 139 -373 4 968 634 221 22 112 chr9 50224824 50225002 -73851170 + RMER20B LTR ERVK 1 162 -465 4 968 936 233 94 13 chr9 50225130 50225365 -73850807 + RMER20B LTR ERVK 148 401 -226 4 968 804 128 0 0 chr9 50225576 50225693 -73850479 + B1_Mur4 SINE Alu 26 142 -8 4 968 8075 59 3 3 chr9 50225864 50226875 -73849297 + L1Md_F2 LINE L1 4575 5585 -298 4 968 8217 43 0 6 chr9 50226876 50227866 -73848306 + L1Md_F2 LINE L1 5587 6570 -12 4 968 374 296 17 17 chr9 50228347 50228664 -73847508 + CT-rich Low_complexity Low_complexity 1 317 0 4 968 793 244 54 19 chr9 50229237 50229442 -73846730 + B3 SINE B2 5 216 0 4 968 364 279 107 7 chr9 50230606 50230747 -73845425 + L2c LINE L2 3194 3387 0 4 968 606 85 0 0 chr9 50230987 50231081 -73845091 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 968 270 0 0 0 chr9 50231147 50231177 -73844995 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 968 253 350 60 0 chr9 50231523 50231623 -73844549 + MLT1I LTR MaLR 9 114 -297 4 968 514 300 23 8 chr9 50231663 50231794 -73844378 + MLT1F2 LTR MaLR 5 137 -423 4 968 878 307 44 4 chr9 50231835 50232106 -73844066 + MLT1F2 LTR MaLR 267 548 -12 4 968 401 186 151 0 chr9 50232168 50232254 -73843918 + PB1D10 SINE Alu 3 101 -16 4 968 283 341 86 27 chr9 50232335 50232522 -73843650 - MIRb SINE MIR -35 233 36 4 968 350 302 95 41 chr9 50232744 50232913 -73843259 - MER45A DNA Tip100 0 178 1 4 968 191 133 22 0 chr9 50234145 50234190 -73841982 + CT-rich Low_complexity Low_complexity 5 50 0 4 968 3355 48 2 0 chr9 50234624 50235019 -73841153 + MTA_Mm LTR MaLR 1 396 0 4 968 603 206 0 0 chr9 50235053 50235228 -73840944 + GA-rich Low_complexity Low_complexity 2 176 0 4 968 295 250 0 0 chr9 50235234 50235306 -73840866 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 4 968 491 196 28 18 chr9 50236058 50236167 -73840005 + B1F SINE Alu 40 149 0 4 968 581 310 12 12 chr9 50237037 50237106 -73839066 + ID SINE ID 12 80 -144 4 968 363 287 64 18 chr9 50237106 50237216 -73838956 + PB1D9 SINE Alu 1 115 -5 4 968 234 0 0 0 chr9 50237216 50237242 -73838930 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 968 483 18 0 0 chr9 50237242 50237298 -73838874 + (GGA)n Simple_repeat Simple_repeat 2 57 0 4 968 888 144 7 20 chr9 50238253 50238402 -73837770 - B1_Mus1 SINE Alu -1 147 1 4 968 312 347 27 17 chr9 50238579 50238719 -73837453 + MIRc SINE MIR 35 173 -95 4 968 474 196 170 0 chr9 50238815 50238927 -73837245 + B1_Mur1 SINE Alu 17 147 -2 4 968 239 378 110 11 chr9 50239014 50239196 -73836976 - MIRb SINE MIR -67 201 2 4 968 195 246 105 0 chr9 50239498 50239555 -73836617 + MER5A DNA MER1_type 19 81 -108 4 968 250 387 27 0 chr9 50239881 50239992 -73836180 + MIRb SINE MIR 26 139 -129 4 968 794 264 11 17 chr9 50240666 50240843 -73835329 + B3 SINE B2 1 176 -40 4 968 21 36 0 0 chr9 50240843 50240871 -73835301 + AT_rich Low_complexity Low_complexity 1 28 0 4 968 39 50 0 0 chr9 50240924 50240984 -73835188 + AT_rich Low_complexity Low_complexity 1 60 0 4 968 291 237 0 0 chr9 50240991 50241067 -73835105 - L1MA8 LINE L1 -47 6244 6169 4 968 1461 267 108 12 chr9 50241071 50241644 -73834528 - L1MA8 LINE L1 -224 6067 5440 4 968 316 233 162 66 chr9 50241733 50241903 -73834269 + MTD LTR MaLR 143 322 -78 4 968 1659 305 70 31 chr9 50242144 50242597 -73833575 + Kanga1c DNA Tc2 4 475 -254 4 968 429 70 0 0 chr9 50242597 50242654 -73833518 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 968 1659 305 70 31 chr9 50242654 50242815 -73833357 + Kanga1c DNA Tc2 476 642 -87 4 968 380 262 0 12 chr9 50242869 50242954 -73833218 + PB1 SINE Alu 1 84 -43 4 968 445 253 2 20 chr9 50243254 50243366 -73832806 + PB1 SINE Alu 26 221 -90 4 968 347 220 0 11 chr9 50243515 50243607 -73832565 + GA-rich Low_complexity Low_complexity 3 93 0 4 968 327 104 0 0 chr9 50243861 50243909 -73832263 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 968 248 301 54 7 chr9 50243921 50244068 -73832104 + L1M6 LINE L1 1901 2054 -4442 4 968 523 257 120 28 chr9 50244219 50244304 -73831868 - Lx8 LINE L1 -2 7471 7379 4 968 324 0 0 0 chr9 50244304 50244340 -73831832 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 968 523 257 120 28 chr9 50244340 50244470 -73831702 - Lx8 LINE L1 -95 7378 7236 4 968 2030 113 0 146 chr9 50244641 50244971 -73831201 + ORR1A4 LTR MaLR 1 278 -51 4 968 1259 41 0 0 chr9 50244971 50245117 -73831055 + B1_Mus2 SINE Alu 2 147 0 4 968 2030 113 0 146 chr9 50245117 50245170 -73831002 + ORR1A4 LTR MaLR 279 328 -1 4 968 324 70 0 0 chr9 50245935 50245978 -73830194 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 4 968 220 360 90 11 chr9 50246916 50247086 -73829086 - MIR SINE MIR -62 206 26 4 968 549 289 74 11 chr9 50247260 50247449 -73828723 - MER119 DNA MER1_type -133 450 250 4 968 202 341 128 16 chr9 50248327 50248452 -73827720 - MIRb SINE MIR -64 204 66 4 968 656 213 22 0 chr9 50248468 50248604 -73827568 + B4 SINE B4 102 240 -52 4 968 198 0 0 0 chr9 50248607 50248629 -73827543 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 968 843 213 72 31 chr9 50249218 50249412 -73826760 + ID_B1 SINE B4 1 202 -22 4 968 221 220 20 0 chr9 50249419 50249469 -73826703 + GA-rich Low_complexity Low_complexity 1 51 0 4 968 1107 250 18 47 chr9 50251364 50251641 -73824531 + ORR1B1-int LTR MaLR 272 540 -969 4 968 242 291 39 10 chr9 50252108 50252212 -73823960 + Lx8 LINE L1 7367 7473 0 4 968 351 0 0 0 chr9 50252652 50252691 -73823481 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 968 465 251 131 33 chr9 50252693 50252961 -73823211 - B4 SINE B4 -18 274 2 4 968 1522 128 132 0 chr9 50253335 50253593 -73822579 + ORR1C1 LTR MaLR 87 378 0 4 968 192 40 0 0 chr9 50253611 50253636 -73822536 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 968 402 21 0 0 chr9 50254028 50254075 -73822097 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 4 968 990 117 0 0 chr9 50254115 50254294 -73821878 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 968 259 295 41 31 chr9 50254301 50254399 -73821773 - RSINE1 SINE B4 -65 100 2 4 968 386 288 177 106 chr9 50255231 50255510 -73820662 - Charlie2b DNA MER1_type -110 2672 2397 4 968 663 284 28 17 chr9 50255510 50255689 -73820483 - B3A SINE B2 -17 181 1 4 968 386 288 177 106 chr9 50255689 50256100 -73820072 - Charlie2b DNA MER1_type -386 2396 1933 4 968 443 280 27 54 chr9 50256603 50256788 -73819384 + L1MC LINE L1 5091 5270 -876 4 968 198 91 0 0 chr9 50257778 50257811 -73818361 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 4 968 369 0 0 0 chr9 50258104 50258145 -73818027 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 968 1033 197 31 10 chr9 50258382 50258562 -73817610 + B3 SINE B2 3 188 -28 4 968 1024 251 42 21 chr9 50258562 50258847 -73817325 + B4 SINE B4 2 292 0 4 968 1033 197 31 10 chr9 50258847 50258861 -73817311 + B3 SINE B2 189 201 -15 4 968 302 276 88 50 chr9 50259761 50259921 -73816251 - HAL1-3A_ME LINE L1 -409 2449 2284 4 968 217 128 21 21 chr9 50259921 50259969 -73816203 + CT-rich Low_complexity Low_complexity 2 49 0 4 968 710 242 6 24 chr9 50261293 50261458 -73814714 + RSINE1 SINE B4 3 164 -1 4 968 1471 75 61 0 chr9 50262055 50262269 -73813903 - RLTR47_MM LTR ERV1 -83 449 223 4 968 271 344 19 75 chr9 50262425 50262532 -73813640 + RSINE1 SINE B4 50 150 -15 4 968 261 0 0 0 chr9 50262541 50262570 -73813602 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 968 275 295 18 37 chr9 50263453 50263562 -73812610 + PB1D10 SINE Alu 2 108 -9 4 968 825 40 0 0 chr9 50263562 50263663 -73812509 + (GGA)n Simple_repeat Simple_repeat 3 103 0 4 968 822 170 0 20 chr9 50263679 50263829 -73812343 + B1_Mur2 SINE Alu 3 149 0 4 968 527 271 25 77 chr9 50263855 50264051 -73812121 + MLT1B LTR MaLR 30 215 -175 4 968 434 278 67 71 chr9 50264131 50264447 -73811725 - RMER12 LTR ERVK -318 1004 772 4 968 477 256 124 43 chr9 50264449 50264706 -73811466 + L1MA7 LINE L1 5895 6172 -119 4 968 423 244 156 140 chr9 50264706 50264892 -73811280 + B3 SINE B2 10 216 0 4 968 2249 163 111 7 chr9 50265035 50265493 -73810679 + Lx9 LINE L1 7075 7580 -64 4 968 454 143 11 0 chr9 50265605 50265696 -73810476 - Lx9 LINE L1 0 7644 7553 4 968 513 71 0 0 chr9 50265724 50265794 -73810378 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 968 316 314 137 0 chr9 50265810 50265934 -73810238 + LTR16B LTR ERVL 15 155 -308 4 968 466 301 97 10 chr9 50266008 50266203 -73809969 + Tigger7 DNA MER2_type 2279 2490 -1 4 968 702 248 126 0 chr9 50266645 50266843 -73809329 + ID_B1 SINE B4 2 224 0 4 968 2317 277 81 4 chr9 50266863 50266991 -73809181 - RCHARR1 DNA MER1_type -237 737 606 4 968 318 50 0 0 chr9 50266991 50267031 -73809141 + (TTA)n Simple_repeat Simple_repeat 1 40 0 4 968 2317 277 81 4 chr9 50267031 50267584 -73808588 - RCHARR1 DNA MER1_type -369 605 5 4 968 213 361 12 0 chr9 50267830 50267913 -73808259 + C-rich Low_complexity Low_complexity 1 84 0 4 968 388 169 14 14 chr9 50267933 50268005 -73808167 - PB1 SINE Alu -21 106 35 4 968 334 224 15 0 chr9 50268194 50268261 -73807911 - MLT1D LTR MaLR -437 68 1 4 968 206 309 23 23 chr9 50268445 50268531 -73807641 + MER91A DNA Tip100 20 105 -91 4 968 3047 62 31 0 chr9 50268695 50269083 -73807089 + MTB LTR MaLR 1 400 0 4 968 583 231 163 51 chr9 50269503 50269681 -73806491 - B3A SINE B2 0 198 1 4 968 450 270 106 124 chr9 50270082 50270365 -73805807 + B4A SINE B4 10 287 -5 4 968 358 143 32 32 chr9 50270372 50270495 -73805677 + (CA)n Simple_repeat Simple_repeat 2 124 0 4 968 450 278 132 52 chr9 50270729 50271078 -73805094 + MTEb LTR MaLR 1 377 -2 4 968 234 0 0 0 chr9 50271135 50271161 -73805011 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 4 968 210 128 0 0 chr9 50271269 50271308 -73804864 + (T)n Simple_repeat Simple_repeat 1 39 0 5 968 502 248 10 0 chr9 50271314 50271415 -73804757 - B3 SINE B2 -6 210 109 5 968 21 0 0 0 chr9 50272153 50272174 -73803998 + AT_rich Low_complexity Low_complexity 1 21 0 5 968 1231 54 0 0 chr9 50272201 50272349 -73803823 + B1_Mus1 SINE Alu 1 148 0 5 968 779 181 58 0 chr9 50272415 50272553 -73803619 + B1_Mur3 SINE Alu 3 148 -1 5 968 676 252 14 76 chr9 50272633 50272843 -73803329 + B3A SINE B2 2 198 0 5 968 227 314 143 29 chr9 50272920 50273025 -73803147 + PB1D10 SINE Alu 1 117 0 5 968 362 317 189 12 chr9 50273119 50273362 -73802810 + L2a LINE L2 2593 2878 -541 5 968 860 232 52 0 chr9 50273399 50273437 -73802735 + B3 SINE B2 1 41 -175 5 968 2391 73 41 3 chr9 50273437 50273752 -73802420 - ORR1A2 LTR MaLR 0 327 1 5 968 860 232 52 0 chr9 50273752 50273907 -73802265 + B3 SINE B2 42 203 -13 5 968 270 136 0 0 chr9 50273907 50273951 -73802221 + (TAG)n Simple_repeat Simple_repeat 1 44 0 5 968 460 247 186 19 chr9 50274128 50274349 -73801823 + MTEa LTR MaLR 113 379 0 5 968 239 314 157 30 chr9 50274453 50274650 -73801522 + L2a LINE L2 2978 3199 -227 5 968 352 296 201 14 chr9 50274823 50274967 -73801205 + ID_B1 SINE B4 1 171 -53 5 968 273 57 0 0 chr9 50275336 50275371 -73800801 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 968 508 297 29 0 chr9 50276055 50276193 -73799979 + L1MA4A LINE L1 5799 5940 -363 5 968 375 262 118 27 chr9 50276196 50276306 -73799866 + PB1D7 SINE Alu 1 120 0 5 968 325 261 0 32 chr9 50276389 50276484 -73799688 + L1MA4A LINE L1 6209 6300 0 5 968 183 307 68 19 chr9 50276579 50276682 -73799490 + L2a LINE L2 3215 3322 -65 5 968 187 212 130 43 chr9 50277455 50277524 -73798648 + L2b LINE L2 3220 3294 -81 5 968 216 0 0 0 chr9 50280245 50280269 -73795903 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 968 180 186 51 0 chr9 50280408 50280467 -73795705 + GA-rich Low_complexity Low_complexity 2 63 0 5 968 220 234 0 21 chr9 50280869 50280917 -73795255 + B1_Mur4 SINE Alu 1 47 -103 5 968 708 258 15 54 chr9 50282434 50282639 -73793533 + B3 SINE B2 20 216 0 5 968 252 0 0 0 chr9 50283344 50283372 -73792800 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 968 705 148 46 0 chr9 50283384 50283492 -73792680 - B1_Mur4 SINE Alu -37 113 1 5 968 725 253 43 0 chr9 50283573 50283735 -73792437 + B3 SINE B2 1 169 -47 5 968 315 214 0 0 chr9 50283745 50283801 -73792371 + PB1D10 SINE Alu 55 110 -7 5 968 191 366 114 48 chr9 50284747 50285407 -73790765 + L2 LINE L2 2333 3035 -384 5 968 379 308 0 19 chr9 50285918 50286024 -73790148 - PB1D10 SINE Alu -13 104 1 5 968 211 288 111 33 chr9 50287319 50287510 -73788662 - MIR SINE MIR -57 211 2 5 968 404 280 142 56 chr9 50287730 50287927 -73788245 - MER20 DNA MER1_type 0 219 6 5 968 669 236 145 21 chr9 50288752 50288938 -73787234 - ID_B1 SINE B4 -13 211 3 5 968 1869 129 58 0 chr9 50289020 50289298 -73786874 + ORR1A2 LTR MaLR 26 319 -8 5 968 34 65 0 0 chr9 50289333 50289395 -73786777 + AT_rich Low_complexity Low_complexity 1 62 0 5 968 2028 165 93 10 chr9 50290043 50290429 -73785743 - MTD LTR MaLR -1 418 1 5 968 703 204 122 9 chr9 50291403 50291616 -73784556 + Lx9 LINE L1 7400 7636 -8 5 968 524 288 23 86 chr9 50291635 50291810 -73784362 + RSINE1 SINE B4 2 165 0 5 968 203 175 25 0 chr9 50292688 50292728 -73783444 + GA-rich Low_complexity Low_complexity 1 41 0 5 968 351 0 0 0 chr9 50292905 50292944 -73783228 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 968 771 112 0 0 chr9 50292978 50293094 -73783078 + (GGA)n Simple_repeat Simple_repeat 3 118 0 5 968 257 0 30 0 chr9 50294234 50294267 -73781905 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 5 968 558 235 29 29 chr9 50294386 50294522 -73781650 - B3 SINE B2 -6 210 75 5 968 189 140 263 0 chr9 50295429 50295486 -73780686 + L3 LINE CR1 745 816 -3673 5 968 806 74 0 0 chr9 50296492 50296600 -73779572 - B1_Mm SINE Alu 0 147 40 5 968 254 190 17 17 chr9 50296552 50296611 -73779561 - 4.5SRNA scRNA scRNA -10 84 26 5 968 223 350 60 24 chr9 50296619 50296786 -73779386 - MIRb SINE MIR -58 210 38 5 968 1244 271 134 32 chr9 50296912 50297503 -73778669 - L1MB7 LINE L1 -14 6668 6018 5 968 21 0 0 0 chr9 50297604 50297625 -73778547 + AT_rich Low_complexity Low_complexity 1 21 0 5 968 238 288 124 9 chr9 50297871 50297976 -73778196 - L1MB7 LINE L1 -738 5934 5818 5 968 441 0 0 0 chr9 50297992 50298041 -73778131 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 968 602 256 226 16 chr9 50298049 50298158 -73778014 - L1MB7 LINE L1 -898 5746 5606 5 968 615 51 0 0 chr9 50298158 50298237 -73777935 + (TTC)n Simple_repeat Simple_repeat 2 80 0 5 968 602 256 221 16 chr9 50298237 50298465 -73777707 - L1MB7 LINE L1 -1039 5605 5344 5 968 223 359 13 0 chr9 50298466 50298544 -73777628 + ID4 SINE ID 1 79 -4 5 968 483 296 37 21 chr9 50298578 50298768 -73777404 - L1MB7 LINE L1 -1328 5316 5124 5 968 1941 129 131 3 chr9 50298867 50299202 -73776970 - ORR1C1 LTR MaLR 0 378 1 5 968 579 194 10 10 chr9 50299213 50299317 -73776855 + PB1D9 SINE Alu 10 113 -7 5 968 384 246 99 45 chr9 50299325 50299568 -73776604 - L1MB7 LINE L1 -5191 1351 1096 5 968 319 310 13 46 chr9 50299596 50299748 -73776424 - ID4_ SINE ID -5 147 1 5 968 539 307 85 68 chr9 50299751 50300234 -73775938 - L1MB7 LINE L1 -5471 1071 581 5 968 231 315 62 23 chr9 50300640 50300770 -73775402 - L1MB7 LINE L1 -6382 160 26 5 968 741 247 26 7 chr9 50300833 50300984 -73775188 + RSINE1 SINE B4 12 165 0 5 968 251 310 104 49 chr9 50300984 50301016 -73775156 + B3 SINE B2 11 203 -13 5 968 577 271 50 6 chr9 50301313 50301473 -73774699 + ID_B1 SINE B4 1 167 -57 5 968 475 265 89 56 chr9 50301472 50301652 -73774520 + B3A SINE B2 13 198 0 5 968 557 160 88 20 chr9 50301661 50301763 -73774409 + PB1D9 SINE Alu 5 113 -7 5 968 208 222 0 0 chr9 50301775 50301811 -73774361 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 968 450 275 18 35 chr9 50301910 50302023 -73774149 + RSINE1 SINE B4 16 126 -39 5 968 234 0 0 0 chr9 50302028 50302054 -73774118 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 968 27 0 0 0 chr9 50303526 50303553 -73772619 + AT_rich Low_complexity Low_complexity 1 27 0 5 968 273 250 127 89 chr9 50303571 50303729 -73772443 - RSINE1 SINE B4 0 165 2 5 968 350 318 68 63 chr9 50303779 50303984 -73772188 - MIR SINE MIR -50 212 7 5 968 258 278 0 53 chr9 50304990 50305066 -73771106 - ID4 SINE ID -10 73 2 5 968 273 119 0 0 chr9 50305627 50305669 -73770503 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 5 968 648 321 107 0 chr9 50306069 50306265 -73769907 + ID_B1 SINE B4 8 224 0 5 968 201 250 0 0 chr9 50306326 50306366 -73769806 - MIRb SINE MIR -185 83 44 5 968 229 292 115 0 chr9 50306958 50307054 -73769118 - ID_B1 SINE B4 -26 198 92 5 968 432 0 0 0 chr9 50307528 50307576 -73768596 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 968 217 250 0 22 chr9 50307872 50307962 -73768210 + (TAAA)n Simple_repeat Simple_repeat 3 90 0 5 968 261 0 0 0 chr9 50308071 50308100 -73768072 + (A)n Simple_repeat Simple_repeat 1 29 0 5 968 333 327 118 20 chr9 50309281 50309434 -73766738 - LTR85a LTR Gypsy? -1 701 534 5 968 348 238 146 18 chr9 50309670 50309715 -73766457 - B2_Mm2 SINE B2 0 195 145 5 968 249 57 0 0 chr9 50309715 50309750 -73766422 + (TATG)n Simple_repeat Simple_repeat 2 36 0 5 968 348 238 146 18 chr9 50309750 50309875 -73766297 - B2_Mm2 SINE B2 -51 144 4 5 968 634 122 10 10 chr9 50309929 50310028 -73766144 - B2_Mm1t SINE B2 -14 179 81 5 968 890 82 25 0 chr9 50310100 50310222 -73765950 - B1_Mm SINE Alu 0 147 23 5 968 189 0 0 0 chr9 50310305 50310326 -73765846 + (G)n Simple_repeat Simple_repeat 1 21 0 5 968 259 226 33 42 chr9 50310628 50310656 -73765516 + ORR1B1-int LTR MaLR 621 647 -862 5 968 733 72 0 0 chr9 50310656 50310753 -73765419 + B1_Mus2 SINE Alu 1 97 -50 5 968 376 257 26 26 chr9 50310757 50310873 -73765299 + PB1D10 SINE Alu 2 117 0 5 968 462 101 0 0 chr9 50311060 50311129 -73765043 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 968 371 312 7 52 chr9 50311151 50311286 -73764886 - B4A SINE B4 -35 257 129 5 968 804 207 61 47 chr9 50311771 50311984 -73764188 + B3 SINE B2 1 216 0 5 968 437 276 187 0 chr9 50312166 50312300 -73763872 - RSINE1 SINE B4 -3 162 4 5 968 432 0 0 0 chr9 50313333 50313381 -73762791 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 968 282 172 482 7 chr9 50313590 50313727 -73762445 - MTD LTR MaLR -217 202 1 5 968 188 225 96 27 chr9 50313846 50313919 -73762253 - MIRc SINE MIR -112 156 79 5 968 230 308 119 8 chr9 50313920 50314038 -73762134 + B1F SINE Alu 3 133 -16 5 968 602 293 185 50 chr9 50314298 50315049 -73761123 - L1M4 LINE L1 -4943 1797 829 5 968 249 108 0 0 chr9 50315083 50315120 -73761052 + (CTTG)n Simple_repeat Simple_repeat 2 38 0 5 968 186 221 13 128 chr9 50315254 50315332 -73760840 - MIRb SINE MIR -23 245 177 5 968 437 284 75 0 chr9 50315332 50315466 -73760706 + B1F SINE Alu 1 144 -5 5 968 189 121 0 0 chr9 50315471 50315504 -73760668 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 5 968 205 372 61 25 chr9 50315933 50316129 -73760043 + MIR3 SINE MIR 2 204 -4 5 968 24 32 0 0 chr9 50316144 50316175 -73759997 + AT_rich Low_complexity Low_complexity 1 31 0 5 968 822 302 19 14 chr9 50316182 50316390 -73759782 - B3 SINE B2 0 216 8 5 968 3336 160 95 37 chr9 50316509 50317150 -73759022 + RLTR33 LTR ERVK 1 678 0 5 968 989 39 78 0 chr9 50317907 50318036 -73758136 - B1_Mus2 SINE Alu -1 146 8 5 968 228 254 96 37 chr9 50317946 50318081 -73758091 - ORR1B1-int LTR MaLR -755 754 612 5 968 1167 129 11 26 chr9 50318195 50318386 -73757786 - B2_Mm2 SINE B2 -7 188 1 5 968 511 320 97 13 chr9 50318405 50318633 -73757539 + MIR SINE MIR 13 259 -3 6 968 492 86 0 0 chr9 50319482 50319552 -73756620 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 968 587 240 11 148 chr9 50319983 50320159 -73756013 - RSINE1 SINE B4 -12 153 2 6 968 450 0 0 0 chr9 50320201 50320251 -73755921 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 968 336 314 174 54 chr9 50320289 50320531 -73755641 - B4A SINE B4 -13 279 9 6 968 872 212 65 5 chr9 50320563 50320762 -73755410 + B3 SINE B2 2 212 -4 6 968 324 260 102 20 chr9 50321294 50321392 -73754780 + MER2 DNA MER2_type 2 107 -238 6 968 597 226 54 14 chr9 50321629 50321777 -73754395 - B3A SINE B2 -44 154 1 6 968 767 224 7 20 chr9 50321895 50322041 -73754131 - B1_Mur1 SINE Alu 0 149 6 6 968 210 331 129 77 chr9 50322046 50322318 -73753854 - L2 LINE L2 -716 2703 2418 6 968 253 224 0 33 chr9 50322346 50322406 -73753766 + GA-rich Low_complexity Low_complexity 4 61 0 6 968 351 208 137 14 chr9 50322578 50322651 -73753521 - PB1D9 SINE Alu -61 88 7 6 968 303 310 0 0 chr9 50322591 50322662 -73753510 - B4 SINE B4 -141 151 81 6 968 229 253 79 112 chr9 50322593 50322682 -73753490 - MT2B LTR ERVL -380 221 136 6 968 230 288 136 0 chr9 50322753 50322819 -73753353 + PB1D7 SINE Alu 1 75 -45 6 968 951 213 85 10 chr9 50322844 50323043 -73753129 + B4 SINE B4 6 219 -73 6 968 186 43 0 0 chr9 50323197 50323220 -73752952 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 6 968 423 272 163 44 chr9 50323450 50323853 -73752319 + MLT1F2 LTR MaLR 61 648 -5 6 968 262 327 75 28 chr9 50323906 50323918 -73752254 + PB1D9 SINE Alu 2 33 -87 6 968 307 275 43 0 chr9 50323918 50323987 -73752185 + ID_B1 SINE B4 97 168 -56 6 968 262 327 75 28 chr9 50323987 50324013 -73752159 + PB1D9 SINE Alu 34 113 -7 6 968 255 226 16 31 chr9 50324576 50324640 -73751532 + B4 SINE B4 19 81 -211 6 968 803 145 0 0 chr9 50324739 50324863 -73751309 + B3 SINE B2 1 124 -92 6 968 2910 293 86 41 chr9 50324868 50325282 -73750890 + Lx8 LINE L1 6230 6627 -846 6 968 1069 166 130 172 chr9 50325282 50325683 -73750489 + ORR1C2 LTR MaLR 1 384 0 6 968 2910 293 86 41 chr9 50325683 50325985 -73750187 + Lx8 LINE L1 6628 6944 -529 6 968 513 0 0 0 chr9 50325985 50326042 -73750130 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 968 2910 293 86 41 chr9 50326042 50326458 -73749714 + Lx8 LINE L1 6945 7414 -59 6 968 1233 172 53 0 chr9 50326530 50326739 -73749433 - URR1B DNA MER1_type 0 225 6 6 968 665 181 159 0 chr9 50327052 50327190 -73748982 - B3A SINE B2 -38 160 1 6 968 3101 233 64 67 chr9 50327891 50328592 -73747580 - RMER1C Other Other -1 1341 664 6 968 438 20 0 0 chr9 50328592 50328643 -73747529 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 968 3101 233 64 67 chr9 50328643 50328874 -73747298 - RMER1C Other Other -679 663 412 6 968 286 333 48 0 chr9 50329059 50329185 -73746987 - RMER1B Other Other -886 180 49 6 968 213 221 35 11 chr9 50329255 50329342 -73746830 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 968 944 241 57 47 chr9 50329353 50329632 -73746540 - RMER1B Other Other -192 874 593 6 968 1054 136 5 32 chr9 50329792 50329982 -73746190 - B2_Mm2 SINE B2 -9 186 2 6 969 576 255 25 50 chr9 50332250 50332411 -73743761 + B3A SINE B2 1 157 -41 6 969 25 0 0 0 chr9 50332521 50332546 -73743626 + AT_rich Low_complexity Low_complexity 1 25 0 6 969 556 261 28 21 chr9 50332940 50333085 -73743087 + ID_B1 SINE B4 77 222 -2 6 969 1287 102 11 0 chr9 50334091 50334268 -73741904 + B2_Mm1t SINE B2 1 179 -14 6 969 332 75 274 62 chr9 50334333 50334445 -73741727 + B2_Mm2 SINE B2 46 186 -9 6 969 351 254 36 0 chr9 50334563 50334673 -73741499 - L1MA6 LINE L1 -17 6283 6170 6 969 451 220 0 0 chr9 50335315 50335415 -73740757 - ID_B1 SINE B4 -16 208 109 6 969 640 222 66 60 chr9 50335833 50336015 -73740157 + B3A SINE B2 1 183 -15 6 969 246 340 48 10 chr9 50337142 50337246 -73738926 + PB1 SINE Alu 11 118 -9 6 969 247 333 116 32 chr9 50337249 50337404 -73738768 + MLT1C LTR MaLR 220 387 -80 6 969 280 279 58 0 chr9 50337523 50337609 -73738563 + PB1D10 SINE Alu 11 105 -15 6 969 28 29 0 0 chr9 50337660 50337695 -73738477 + AT_rich Low_complexity Low_complexity 1 35 0 6 969 509 211 18 0 chr9 50337705 50337814 -73738358 - B1_Mur3 SINE Alu -30 119 9 6 969 495 118 0 0 chr9 50338362 50338438 -73737734 + (GGA)n Simple_repeat Simple_repeat 3 78 0 6 969 234 292 51 58 chr9 50338647 50338803 -73737369 - LTR85a LTR Gypsy? -41 661 507 6 969 1104 189 32 5 chr9 50339580 50339798 -73736374 + URR1B DNA MER1_type 2 225 0 6 969 438 243 0 46 chr9 50339964 50340072 -73736100 - RSINE1 SINE B4 -60 105 3 6 969 223 208 0 20 chr9 50340148 50340197 -73735975 + RSINE1 SINE B4 8 55 -110 6 969 240 312 25 0 chr9 50340273 50340353 -73735819 + RSINE1 SINE B4 82 163 -2 6 969 1432 64 21 0 chr9 50340384 50340572 -73735600 + B2_Mm2 SINE B2 2 193 -2 6 969 463 209 8 80 chr9 50340585 50340710 -73735462 - PB1D9 SINE Alu -1 119 4 6 969 342 238 24 48 chr9 50340782 50340866 -73735306 + B3A SINE B2 2 83 -115 6 969 24 0 0 0 chr9 50340934 50340958 -73735214 + AT_rich Low_complexity Low_complexity 1 24 0 6 969 933 207 93 0 chr9 50340958 50341151 -73735021 + B3 SINE B2 1 211 -5 6 969 300 244 134 63 chr9 50342084 50342211 -73733961 - MER117 DNA MER1_type -53 144 9 6 969 890 210 43 10 chr9 50343262 50343469 -73732703 + B3 SINE B2 3 216 0 6 969 255 241 0 0 chr9 50344577 50344631 -73731541 - L2a LINE L2 0 3426 3373 6 969 260 300 67 104 chr9 50344785 50344919 -73731253 + MER77 LTR ERVL 2 130 -477 6 969 210 273 73 0 chr9 50344984 50345039 -73731133 + ID2 SINE ID 2 60 -23 6 969 288 0 0 0 chr9 50345050 50345082 -73731090 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 969 522 0 0 0 chr9 50345299 50345357 -73730815 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 6 969 375 214 48 48 chr9 50345507 50345610 -73730562 + L1M4 LINE L1 5389 5491 -683 6 969 268 249 23 150 chr9 50345615 50345792 -73730380 + B4 SINE B4 2 155 -137 6 969 251 269 38 25 chr9 50345776 50345856 -73730316 - PB1 SINE Alu -46 81 1 6 969 653 241 21 0 chr9 50345864 50346009 -73730163 - B1_Mur1 SINE Alu -1 148 1 6 969 345 288 53 35 chr9 50346030 50346199 -73729973 + L1M5 LINE L1 3846 4017 -2129 6 969 387 274 67 25 chr9 50346216 50346336 -73729836 + ID_B1 SINE B4 90 214 -10 6 969 799 144 13 0 chr9 50346526 50346679 -73729493 + GA-rich Low_complexity Low_complexity 1 155 0 6 969 252 220 0 0 chr9 50346885 50346935 -73729237 + PB1D9 SINE Alu 3 52 -68 6 969 180 203 102 0 chr9 50349849 50349908 -73726264 - L2a LINE L2 -304 3122 3058 6 969 470 302 132 31 chr9 50349904 50350290 -73725882 - L2a LINE L2 -736 2683 2259 6 969 189 324 0 14 chr9 50351840 50351912 -73724260 + MIR SINE MIR 90 160 -102 6 969 551 244 44 0 chr9 50352970 50353105 -73723067 + B1F1 SINE Alu 9 149 0 6 969 432 0 0 0 chr9 50353637 50353685 -73722487 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 969 795 194 83 6 chr9 50353699 50353880 -73722292 + B3A SINE B2 2 196 -2 6 969 824 201 175 18 chr9 50354416 50354639 -73721533 + Lx5 LINE L1 6793 7050 0 6 969 5044 58 0 6 chr9 50354797 50355418 -73720754 - L1Md_F2 LINE L1 -12 6570 5954 6 969 236 88 0 0 chr9 50355419 50355453 -73720719 + L1Md_F2 LINE L1 5930 5963 -619 6 969 614 242 8 0 chr9 50355584 50355708 -73720464 + RSINE1 SINE B4 25 149 -16 6 969 229 364 39 0 chr9 50355816 50355893 -73720279 + B1F SINE Alu 5 84 -65 6 969 412 308 42 0 chr9 50356073 50356213 -73719959 + MER34 LTR ERV1 5 150 -392 6 969 528 149 67 44 chr9 50356213 50356352 -73719820 + B1_Mur3 SINE Alu 1 147 -1 6 969 414 0 0 0 chr9 50356634 50356680 -73719492 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 969 429 248 29 0 chr9 50356682 50356787 -73719385 - B1F SINE Alu -1 148 41 6 969 306 286 54 54 chr9 50356826 50356974 -73719198 + MER34 LTR ERV1 395 542 0 6 969 661 225 12 9 chr9 50356974 50357135 -73719037 + L1MB2 LINE L1 5787 5947 -232 6 969 333 221 126 11 chr9 50357144 50357231 -73718941 + RSINE1 SINE B4 39 135 -30 6 969 466 203 114 0 chr9 50357300 50357423 -73718749 + L1MB2 LINE L1 5990 6126 -45 6 969 339 354 87 21 chr9 50357585 50357917 -73718255 - L1M5 LINE L1 -1314 4832 4479 6 969 281 307 0 0 chr9 50358063 50358138 -73718034 + PB1D7 SINE Alu 46 120 0 6 969 384 259 0 0 chr9 50358867 50359002 -73717170 + (CA)n Simple_repeat Simple_repeat 1 135 0 6 969 270 289 13 0 chr9 50359598 50359674 -73716498 + ID4 SINE ID 4 80 -3 6 969 319 244 144 0 chr9 50359700 50359790 -73716382 + PB1D10 SINE Alu 4 106 -11 6 969 424 291 39 45 chr9 50359886 50360041 -73716131 + B4A SINE B4 83 236 -56 6 969 432 0 0 0 chr9 50360065 50360113 -73716059 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 969 225 291 185 17 chr9 50360183 50360302 -73715870 + MIR SINE MIR 37 175 -87 6 969 910 231 16 0 chr9 50360901 50361087 -73715085 - B3 SINE B2 -19 197 9 6 969 182 342 14 14 chr9 50361314 50361388 -73714784 + MIRc SINE MIR 78 151 -117 6 969 826 138 0 0 chr9 50363677 50363800 -73712372 - B1_Mur4 SINE Alu -7 143 21 6 969 486 203 58 17 chr9 50363994 50364114 -73712058 + B1_Mur4 SINE Alu 23 147 -3 6 969 1367 149 9 5 chr9 50364383 50364606 -73711566 + URR1B DNA MER1_type 1 224 -1 6 969 31 0 0 0 chr9 50365259 50365290 -73710882 + AT_rich Low_complexity Low_complexity 1 31 0 7 969 27 29 0 0 chr9 50365837 50365871 -73710301 + AT_rich Low_complexity Low_complexity 1 34 0 7 969 28 29 0 0 chr9 50365964 50365999 -73710173 + AT_rich Low_complexity Low_complexity 1 35 0 7 969 240 346 13 0 chr9 50366689 50366767 -73709405 + ID4_ SINE ID 2 80 -3 7 969 435 38 0 0 chr9 50368077 50368130 -73708042 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 7 969 827 143 7 29 chr9 50368143 50368280 -73707892 - B1_Mus2 SINE Alu -13 134 1 7 969 369 0 0 0 chr9 50368463 50368504 -73707668 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 969 201 255 20 0 chr9 50368569 50368620 -73707552 + CT-rich Low_complexity Low_complexity 2 53 0 7 969 360 0 0 0 chr9 50368621 50368661 -73707511 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 969 779 27 273 0 chr9 50368662 50368772 -73707400 - B1_Mm SINE Alu -6 141 2 7 969 458 244 21 32 chr9 50369022 50369163 -73707009 - B1F1 SINE Alu -7 142 2 7 969 232 268 42 59 chr9 50369057 50369176 -73706996 - B4A SINE B4 -96 196 80 7 969 207 0 0 0 chr9 50370124 50370147 -73706025 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 969 436 218 178 15 chr9 50370361 50370496 -73705676 + ID_B1 SINE B4 54 210 -14 7 969 186 43 0 0 chr9 50370659 50370682 -73705490 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 969 252 292 28 0 chr9 50371219 50371231 -73704941 - ID SINE ID -137 87 14 7 969 275 267 0 0 chr9 50371231 50371291 -73704881 - ID2 SINE ID -10 73 14 7 969 216 0 0 0 chr9 50371569 50371593 -73704579 + (A)n Simple_repeat Simple_repeat 1 24 0 7 969 239 240 0 0 chr9 50372020 50372070 -73704102 + B4A SINE B4 1 50 -242 7 969 664 278 0 41 chr9 50372116 50372285 -73703887 + RSINE1 SINE B4 4 165 0 7 969 225 0 0 0 chr9 50372292 50372317 -73703855 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 969 399 113 0 0 chr9 50372316 50372387 -73703785 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 969 1213 48 7 0 chr9 50372434 50372580 -73703592 - B1_Mus2 SINE Alu 0 147 1 7 969 542 269 28 45 chr9 50372581 50372760 -73703412 + B4 SINE B4 98 273 -19 7 969 477 76 0 0 chr9 50372778 50372844 -73703328 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 969 27 0 0 0 chr9 50373066 50373093 -73703079 + AT_rich Low_complexity Low_complexity 1 27 0 7 969 438 214 0 100 chr9 50373745 50373875 -73702297 - Charlie1b DNA MER1_type -23 500 384 7 969 185 65 32 0 chr9 50375000 50375031 -73701141 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 7 969 503 203 109 36 chr9 50375032 50375170 -73701002 - B1_Mur2 SINE Alu -1 148 1 7 969 1402 147 4 18 chr9 50375428 50375656 -73700516 - URR1B DNA MER1_type 0 225 1 7 969 329 330 9 9 chr9 50375726 50375839 -73700333 - MIR3 SINE MIR -6 202 90 7 969 412 289 47 142 chr9 50375994 50376312 -73699860 + B4 SINE B4 3 290 -2 7 969 207 317 0 0 chr9 50376393 50376453 -73699719 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 969 197 65 0 31 chr9 50376709 50376741 -73699431 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 7 969 1246 125 0 15 chr9 50376741 50376936 -73699236 - B2_Mm2 SINE B2 0 195 4 7 969 331 267 0 62 chr9 50377466 50377562 -73698610 - PB1 SINE Alu -29 98 9 7 969 396 245 104 35 chr9 50377603 50377747 -73698425 - RSINE1 SINE B4 -7 158 5 7 969 463 257 26 91 chr9 50377785 50377939 -73698233 - ID_B1 SINE B4 0 224 81 7 969 22 0 0 0 chr9 50378629 50378651 -73697521 + AT_rich Low_complexity Low_complexity 1 22 0 7 969 324 64 0 0 chr9 50378739 50378786 -73697386 + (ATTG)n Simple_repeat Simple_repeat 1 47 0 7 969 657 111 0 0 chr9 50378799 50378898 -73697274 - B2_Mm2 SINE B2 -95 100 2 7 969 337 267 37 37 chr9 50378984 50379093 -73697079 - PB1D7 SINE Alu -7 113 5 7 969 955 169 109 0 chr9 50379117 50379301 -73696871 - B3 SINE B2 -7 209 6 7 969 322 21 43 0 chr9 50379457 50379504 -73696668 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 969 1269 257 67 79 chr9 50379599 50380194 -73695978 - L1MA6 LINE L1 -331 5969 5388 7 969 831 220 58 0 chr9 50380194 50380367 -73695805 - B3A SINE B2 -15 183 1 7 969 595 254 40 0 chr9 50380367 50380493 -73695679 - L1MA6 LINE L1 -857 5440 5310 7 969 456 217 0 0 chr9 50380973 50381056 -73695116 + B3A SINE B2 1 83 -115 7 969 1068 68 0 0 chr9 50381074 50381220 -73694952 + (GA)n Simple_repeat Simple_repeat 1 146 0 7 969 251 312 61 37 chr9 50381805 50381968 -73694204 - LTR48B LTR ERV1 -437 207 41 7 969 375 103 59 0 chr9 50382073 50382141 -73694031 + B2_Mm1t SINE B2 31 102 -91 7 969 229 102 0 119 chr9 50382140 50382207 -73693965 + B2_Mm2 SINE B2 137 195 0 7 969 470 326 55 14 chr9 50382221 50382439 -73693733 - Charlie4a DNA MER1_type -243 265 39 7 969 652 169 198 73 chr9 50383080 50383272 -73692900 + B3 SINE B2 1 216 0 7 969 192 152 0 0 chr9 50383792 50383825 -73692347 + GA-rich Low_complexity Low_complexity 4 36 0 7 969 1141 101 6 6 chr9 50383825 50384005 -73692167 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 7 969 1126 163 76 5 chr9 50384199 50384396 -73691776 - B3 SINE B2 -4 212 2 7 969 649 178 8 8 chr9 50384557 50384676 -73691496 + B1_Mur1 SINE Alu 18 136 -13 7 969 361 327 19 0 chr9 50385070 50385081 -73691091 - ID_B1 SINE B4 -22 202 99 7 969 423 242 33 0 chr9 50385081 50385172 -73691000 - B1F1 SINE Alu -38 111 18 7 969 807 162 35 0 chr9 50385378 50385520 -73690652 + B1_Mur3 SINE Alu 2 148 -1 7 969 1494 49 27 0 chr9 50386359 50386544 -73689628 + B2_Mm1a SINE B2 1 190 -3 7 969 453 242 106 24 chr9 50386810 50386933 -73689239 - B1_Mur1 SINE Alu 0 149 17 7 969 369 165 259 0 chr9 50387065 50387150 -73689022 - B3 SINE B2 -109 107 1 7 969 589 290 7 0 chr9 50387744 50387889 -73688283 - ID_B1 SINE B4 -3 221 76 7 969 1477 68 16 0 chr9 50389013 50389203 -73686969 + B2_Mm2 SINE B2 2 194 -1 7 969 291 114 0 0 chr9 50389369 50389413 -73686759 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 969 344 238 171 54 chr9 50389418 50389547 -73686625 - B3A SINE B2 -54 144 1 7 969 289 172 17 0 chr9 50390150 50390208 -73685964 + B3A SINE B2 3 61 -137 7 969 294 245 27 117 chr9 50390231 50390342 -73685830 - RSINE1 SINE B4 -61 104 4 7 969 267 304 109 0 chr9 50390409 50390501 -73685671 + B3A SINE B2 79 180 -18 7 969 328 151 0 0 chr9 50390529 50390582 -73685590 + PB1D9 SINE Alu 29 81 -39 7 969 1756 134 138 34 chr9 50390623 50390948 -73685224 - RLTR15 LTR ERVK 0 359 1 7 969 1234 189 259 102 chr9 50391528 50391988 -73684184 - MT2A LTR ERVL 0 533 2 7 969 644 251 41 62 chr9 50392127 50392322 -73683850 - B3A SINE B2 0 198 8 7 969 687 206 0 14 chr9 50392373 50392507 -73683665 + B3A SINE B2 8 139 -59 7 969 1151 154 5 45 chr9 50392507 50392731 -73683441 + BGLII_B LTR ERVK 1 215 -226 7 969 2472 135 20 52 chr9 50392731 50393175 -73682997 - RLTR23 LTR ERV1 0 430 1 7 969 489 256 141 65 chr9 50393523 50393723 -73682449 - MuRRS4-int LTR ERV1 -1365 3698 3527 7 969 578 344 73 48 chr9 50394169 50394768 -73681404 - RLTR4_MM-int LTR ERV1 -3401 4200 3587 7 969 375 162 0 0 chr9 50394771 50394870 -73681302 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 969 609 231 8 15 chr9 50395564 50395696 -73680476 - RSINE1 SINE B4 -32 133 3 7 969 227 106 42 21 chr9 50395865 50395913 -73680259 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 7 969 892 193 94 20 chr9 50396081 50396282 -73679890 + B3 SINE B2 1 216 0 7 969 404 222 20 0 chr9 50396313 50396412 -73679760 + RSINE1 SINE B4 8 108 -57 7 969 282 250 107 16 chr9 50396564 50396686 -73679486 - MTD LTR MaLR 0 419 287 7 969 666 78 0 0 chr9 50396700 50396802 -73679370 + (TC)n Simple_repeat Simple_repeat 1 102 0 7 969 444 276 0 30 chr9 50396802 50396903 -73679269 - ID_B1 SINE B4 -35 189 92 7 969 189 132 0 0 chr9 50397036 50397074 -73679098 + (T)n Simple_repeat Simple_repeat 1 38 0 7 969 716 183 0 0 chr9 50397074 50397194 -73678978 - PB1D9 SINE Alu 0 120 1 7 969 564 183 0 0 chr9 50397194 50397287 -73678885 - B1_Mur2 SINE Alu -56 93 1 7 969 417 299 129 104 chr9 50397579 50397635 -73678537 - B4A SINE B4 -2 290 239 7 969 1335 95 21 0 chr9 50397635 50397824 -73678348 + B2_Mm1t SINE B2 1 193 0 7 969 417 299 129 104 chr9 50397824 50398047 -73678125 - B4A SINE B4 -54 238 4 7 969 237 65 0 0 chr9 50398081 50398112 -73678060 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 7 969 344 190 242 33 chr9 50398113 50398233 -73677939 - B1F1 SINE Alu 0 149 5 7 969 1274 226 180 69 chr9 50398266 50398799 -73677373 + MT2B LTR ERVL 1 592 -9 7 969 528 211 53 0 chr9 50399331 50399445 -73676727 - PB1D9 SINE Alu 0 120 1 7 969 290 215 13 0 chr9 50399547 50399626 -73676546 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 969 961 155 0 0 chr9 50400064 50400212 -73675960 - B1_Mus1 SINE Alu 0 148 1 7 969 878 238 19 33 chr9 50400264 50400477 -73675695 - B3 SINE B2 -4 212 3 7 969 289 327 9 9 chr9 50400556 50400664 -73675508 + B1F SINE Alu 34 141 -8 7 969 821 293 54 11 chr9 50400688 50400964 -73675208 + B4A SINE B4 1 288 -4 7 969 489 84 0 0 chr9 50401438 50401509 -73674663 + (GA)n Simple_repeat Simple_repeat 1 71 0 8 969 565 207 168 32 chr9 50401748 50401886 -73674286 + B3 SINE B2 1 156 -60 8 969 594 0 0 0 chr9 50401886 50401952 -73674220 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 969 565 207 168 32 chr9 50401952 50401998 -73674174 + B3 SINE B2 157 210 -6 8 969 1402 218 104 27 chr9 50402001 50402336 -73673836 + Lx6 LINE L1 7100 7460 0 8 969 526 228 49 0 chr9 50402351 50402474 -73673698 + RSINE1 SINE B4 1 129 -36 8 969 991 16 0 0 chr9 50402514 50402637 -73673535 + B1_Mus2 SINE Alu 12 134 -13 8 969 180 0 0 0 chr9 50402637 50402657 -73673515 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 969 323 320 41 8 chr9 50403122 50403245 -73672927 - RSINE1 SINE B4 -31 134 8 8 969 515 192 221 8 chr9 50403286 50403417 -73672755 - RSINE1 SINE B4 -5 160 2 8 969 505 213 88 7 chr9 50403784 50403921 -73672251 - B1F SINE Alu 0 149 2 8 969 1152 68 0 0 chr9 50403961 50404108 -73672064 - B1_Mus1 SINE Alu 0 148 2 8 969 275 248 98 10 chr9 50404137 50404239 -73671933 + PB1 SINE Alu 17 127 0 8 969 435 266 63 16 chr9 50404254 50404380 -73671792 + B1F SINE Alu 9 140 -9 8 969 28 0 0 0 chr9 50404451 50404479 -73671693 + AT_rich Low_complexity Low_complexity 1 28 0 8 969 789 107 114 0 chr9 50405602 50405733 -73670439 + B1_Mus1 SINE Alu 1 146 -2 8 969 206 312 0 0 chr9 50406056 50406104 -73670068 - L2b LINE L2 -354 3021 2974 8 969 232 205 60 60 chr9 50406216 50406299 -73669873 - L1MB7 LINE L1 0 6184 6102 8 969 228 316 128 15 chr9 50406329 50406602 -73669570 - L1MB7 LINE L1 -204 5974 5671 8 969 314 304 25 59 chr9 50406605 50406724 -73669448 - PB1D10 SINE Alu 0 117 3 8 969 331 275 11 32 chr9 50406640 50406734 -73669438 - ID_B1 SINE B4 -59 165 74 8 969 22 35 0 0 chr9 50407282 50407311 -73668861 + AT_rich Low_complexity Low_complexity 1 29 0 8 969 427 167 263 0 chr9 50407794 50407908 -73668264 + B1F SINE Alu 1 144 -5 8 969 241 270 0 31 chr9 50407939 50408004 -73668168 + B1_Mm SINE Alu 52 114 -33 8 969 511 215 53 8 chr9 50408488 50408619 -73667553 + B3 SINE B2 80 216 0 8 969 736 244 28 47 chr9 50408857 50409068 -73667104 - B3 SINE B2 -8 208 2 8 969 25 0 0 0 chr9 50409072 50409097 -73667075 + AT_rich Low_complexity Low_complexity 1 25 0 8 969 473 182 289 6 chr9 50409102 50409268 -73666904 + ID_B1 SINE B4 5 217 -7 8 969 1291 251 81 15 chr9 50409645 50410038 -73666134 - MTD LTR MaLR 0 419 1 8 969 207 0 0 0 chr9 50410164 50410187 -73665985 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8 969 413 202 21 11 chr9 50410228 50410323 -73665849 - B1_Mur1 SINE Alu -15 134 39 8 969 291 301 32 0 chr9 50411408 50411531 -73664641 + B1_Mur2 SINE Alu 1 127 -22 8 969 742 110 24 0 chr9 50412732 50412859 -73663313 - B1_Mus1 SINE Alu -8 140 11 8 969 223 336 84 25 chr9 50414233 50414352 -73661820 - MIRc SINE MIR -116 152 27 8 969 465 205 0 0 chr9 50414646 50414724 -73661448 + ID4 SINE ID 2 79 -4 8 969 261 0 0 0 chr9 50414724 50414753 -73661419 + (TAA)n Simple_repeat Simple_repeat 2 30 0 8 969 380 266 55 0 chr9 50416152 50416205 -73659967 + B1F2 SINE Alu 1 53 -96 8 969 760 81 178 39 chr9 50416205 50416320 -73659852 + B1_Mm SINE Alu 1 137 -10 8 969 229 26 26 26 chr9 50416320 50416359 -73659813 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 969 760 81 178 39 chr9 50416359 50416372 -73659800 + B1_Mm SINE Alu 138 147 0 8 969 380 266 55 0 chr9 50416372 50416446 -73659726 + B1F2 SINE Alu 54 134 -15 8 969 279 0 0 0 chr9 50416446 50416477 -73659695 + (CATA)n Simple_repeat Simple_repeat 3 33 0 8 969 347 336 0 87 chr9 50416562 50416689 -73659483 + ID_B1 SINE B4 84 199 -25 8 969 664 274 252 0 chr9 50416710 50417027 -73659145 + Tigger7 DNA MER2_type 9 405 -2086 8 969 27 0 0 0 chr9 50417039 50417066 -73659106 + AT_rich Low_complexity Low_complexity 1 27 0 8 969 462 233 68 8 chr9 50417247 50417364 -73658808 - PB1 SINE Alu -3 124 1 8 969 477 253 136 26 chr9 50417853 50418125 -73658047 - L1MB7 LINE L1 -221 5963 5662 8 969 1043 191 80 0 chr9 50418130 50418329 -73657843 - B3 SINE B2 0 216 2 8 969 763 83 223 0 chr9 50418844 50418965 -73657207 + B1_Mus1 SINE Alu 1 148 0 8 969 509 292 76 33 chr9 50419141 50419252 -73656920 + B3A SINE B2 1 117 -81 8 969 3238 56 2 5 chr9 50419252 50419649 -73656523 + MTA_Mm LTR MaLR 1 396 0 8 969 509 292 76 33 chr9 50419649 50419721 -73656451 + B3A SINE B2 118 192 -6 8 969 517 260 48 7 chr9 50419786 50419933 -73656239 + RSINE1 SINE B4 11 163 -2 8 969 749 189 35 0 chr9 50419980 50420123 -73656049 - B1_Mur1 SINE Alu 0 149 2 8 969 216 158 0 0 chr9 50420159 50420197 -73655975 + GA-rich Low_complexity Low_complexity 1 38 0 8 969 776 51 242 25 chr9 50420744 50420864 -73655308 + B1_Mus1 SINE Alu 3 148 0 8 969 369 184 98 27 chr9 50421172 50421284 -73654888 - PB1D9 SINE Alu 0 120 1 8 969 270 283 38 66 chr9 50421426 50421532 -73654640 - PB1D10 SINE Alu -2 115 13 8 969 209 269 0 0 chr9 50421651 50421703 -73654469 + GA-rich Low_complexity Low_complexity 1 52 0 8 969 371 294 34 89 chr9 50421801 50421980 -73654192 - B4 SINE B4 -118 174 6 8 969 676 207 46 20 chr9 50422005 50422158 -73654014 - B3 SINE B2 -25 191 35 8 969 259 300 50 0 chr9 50422199 50422279 -73653893 - B1F1 SINE Alu -65 84 1 8 969 21 36 0 0 chr9 50423686 50423714 -73652458 + AT_rich Low_complexity Low_complexity 1 28 0 8 969 381 226 107 21 chr9 50424242 50424382 -73651790 - MER2 DNA MER2_type -143 202 51 8 969 201 39 0 0 chr9 50425300 50425326 -73650846 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 969 1031 118 71 22 chr9 50425884 50426066 -73650106 - B2_Mm2 SINE B2 -4 191 1 8 969 202 259 19 0 chr9 50426130 50426184 -73649988 - MIR SINE MIR -207 55 1 8 969 301 290 68 7 chr9 50427025 50427171 -73649001 - RSINE1 SINE B4 -8 157 3 8 969 603 139 70 0 chr9 50427189 50427304 -73648868 - B1_Mur2 SINE Alu -6 143 21 8 969 316 194 28 69 chr9 50427510 50427582 -73648590 + ID4 SINE ID 12 80 -3 8 969 192 200 0 0 chr9 50427582 50427622 -73648550 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 8 969 834 136 57 7 chr9 50428019 50428160 -73648012 - B1_Mur4 SINE Alu -2 148 1 8 969 22 0 0 0 chr9 50428206 50428228 -73647944 + AT_rich Low_complexity Low_complexity 1 22 0 8 969 681 234 0 14 chr9 50430538 50430681 -73645491 + B1_Mur2 SINE Alu 6 146 -3 8 969 303 269 97 69 chr9 50430714 50430858 -73645314 - MER2 DNA MER2_type -192 153 6 8 969 803 149 260 29 chr9 50431311 50431484 -73644688 - B3 SINE B2 -1 215 3 8 969 234 0 0 0 chr9 50432056 50432082 -73644090 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 8 969 1038 52 74 0 chr9 50432082 50432210 -73643962 - B1_Mm SINE Alu -7 140 3 8 969 927 176 36 58 chr9 50433132 50433608 -73642564 + RMER17C LTR ERVK 1 408 -2 8 969 604 209 70 0 chr9 50433672 50433801 -73642371 - B1_Mur1 SINE Alu -9 140 3 8 969 310 294 154 66 chr9 50433964 50433993 -73642179 + B3A SINE B2 1 30 -168 8 969 1287 105 39 0 chr9 50433993 50434174 -73641998 + B2_Mm2 SINE B2 3 190 -5 8 969 310 294 154 66 chr9 50434174 50434326 -73641846 + B3A SINE B2 31 198 0 8 969 2923 9 0 0 chr9 50434385 50434707 -73641465 - RLTRETN_Mm LTR ERVK 0 322 1 8 969 42276 22 2 12 chr9 50434707 50437486 -73638686 - MMETn-int LTR ERVK 0 4844 2087 8 969 1717 26 0 0 chr9 50437486 50437679 -73638493 + B2_Mm1t SINE B2 1 193 0 8 969 42276 22 2 12 chr9 50437679 50439793 -73636379 - MMETn-int LTR ERVK -2758 2086 1 8 969 2915 9 0 0 chr9 50439793 50440115 -73636057 - RLTRETN_Mm LTR ERVK 0 322 1 8 969 1244 185 80 67 chr9 50440213 50440414 -73635758 - MTD LTR MaLR -9 410 202 8 969 608 160 144 66 chr9 50440414 50440595 -73635577 - B2_Mm2 SINE B2 0 195 1 8 969 1244 185 80 67 chr9 50440595 50440706 -73635466 - MTD LTR MaLR -218 201 94 8 969 510 236 117 15 chr9 50441253 50441439 -73634733 + B3 SINE B2 1 195 0 8 969 1233 85 62 6 chr9 50441543 50441720 -73634452 + B2_Mm2 SINE B2 2 188 -7 8 969 252 62 0 0 chr9 50441721 50441753 -73634419 - MYSERV6-int LTR ERVK -5067 3892 3861 8 969 294 289 148 0 chr9 50441795 50441930 -73634242 - RSINE1 SINE B4 -8 157 3 8 969 414 226 111 15 chr9 50442257 50442392 -73633780 - B3 SINE B2 -10 206 59 8 969 314 259 67 11 chr9 50444851 50444941 -73631231 - ID_B1 SINE B4 -32 192 98 8 969 272 291 94 0 chr9 50445076 50445193 -73630979 + MER58B DNA MER1_type 205 332 -9 8 969 964 106 0 0 chr9 50445202 50445344 -73630828 + B1_Mus1 SINE Alu 7 148 0 8 969 519 174 138 0 chr9 50446247 50446356 -73629816 + B3 SINE B2 7 130 -86 8 969 216 0 0 0 chr9 50446395 50446419 -73629753 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 8 969 518 241 78 7 chr9 50446981 50447123 -73629049 + RSINE1 SINE B4 2 153 -12 8 969 213 39 0 0 chr9 50447177 50447203 -73628969 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 8 969 284 247 37 0 chr9 50447510 50447591 -73628581 + MER21B LTR ERV1 615 698 -165 8 969 387 239 159 0 chr9 50447716 50447829 -73628343 + B3A SINE B2 52 182 -16 8 969 21 0 0 0 chr9 50447844 50447865 -73628307 + AT_rich Low_complexity Low_complexity 1 21 0 8 969 254 305 89 19 chr9 50447890 50448034 -73628138 + MIRb SINE MIR 30 187 -81 8 969 991 95 0 0 chr9 50448579 50448726 -73627446 - B1_Mus1 SINE Alu 0 148 2 8 969 350 223 152 29 chr9 50448775 50448939 -73627233 + L1MB8 LINE L1 3669 3850 -2296 8 969 245 279 131 40 chr9 50449077 50449275 -73626897 + L1MB8 LINE L1 3878 4093 -2053 8 969 283 239 178 78 chr9 50449419 50449750 -73626422 + L1MB8 LINE L1 5814 6177 -1 8 969 1116 95 0 0 chr9 50449816 50449964 -73626208 + B1_Mus1 SINE Alu 1 148 0 8 969 652 128 8 49 chr9 50449993 50450116 -73626056 + B1_Mur4 SINE Alu 32 149 -1 9 969 192 97 0 0 chr9 50450134 50450165 -73626007 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 969 449 313 37 53 chr9 50450182 50450371 -73625801 - B3 SINE B2 -30 186 1 9 969 574 256 107 13 chr9 50450940 50451133 -73625039 - B3 SINE B2 -1 194 1 9 969 547 258 79 12 chr9 50451133 50451286 -73624886 - B4A SINE B4 -60 232 69 9 969 386 271 107 0 chr9 50451842 50451964 -73624208 + B1F1 SINE Alu 1 135 -14 9 969 328 291 0 0 chr9 50452806 50452885 -73623287 + PB1D10 SINE Alu 3 81 -36 9 969 198 0 0 0 chr9 50453084 50453106 -73623066 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 9 969 650 120 9 0 chr9 50453369 50453477 -73622695 - B1_Mur4 SINE Alu 0 150 42 9 969 198 91 0 0 chr9 50453734 50453767 -73622405 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 9 969 378 0 0 0 chr9 50454649 50454691 -73621481 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 969 201 286 70 23 chr9 50455602 50455688 -73620484 - MIR SINE MIR -170 92 3 9 969 334 241 12 12 chr9 50456102 50456182 -73619990 + PB1D10 SINE Alu 5 84 -33 9 969 266 0 29 0 chr9 50456291 50456325 -73619847 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 969 305 261 15 0 chr9 50456332 50456397 -73619775 + RSINE1 SINE B4 3 68 -97 9 969 478 273 62 8 chr9 50456408 50456537 -73619635 - RSINE1 SINE B4 -21 144 9 9 969 561 170 23 9 chr9 50457227 50457340 -73618832 - B1_Mus2 SINE Alu 0 147 1 9 969 1687 36 0 0 chr9 50459140 50459332 -73616840 - B2_Mm1a SINE B2 0 193 2 9 969 267 288 27 19 chr9 50459354 50459480 -73616692 + MIR SINE MIR 68 191 -85 9 969 188 35 35 0 chr9 50459953 50459982 -73616190 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 9 969 319 276 82 0 chr9 50460404 50460502 -73615670 + B1F1 SINE Alu 22 127 -22 9 969 234 185 73 18 chr9 50460562 50460617 -73615555 + PB1D9 SINE Alu 56 113 -7 9 969 306 227 0 0 chr9 50460984 50461059 -73615113 + GA-rich Low_complexity Low_complexity 1 75 0 9 969 1034 167 108 0 chr9 50462143 50462347 -73613825 - URR1A DNA MER1_type 0 226 1 9 121 7623 91 29 18 chr9 50462382 50463608 -73612564 - Lx LINE L1 0 6654 5415 9 970 278 106 21 0 chr9 50463709 50463756 -73612416 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 970 619 258 101 0 chr9 50463770 50463929 -73612243 + B3A SINE B2 2 176 -22 9 970 396 0 0 0 chr9 50464118 50464162 -73612010 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 970 247 230 112 22 chr9 50464174 50464263 -73611909 - B4A SINE B4 -1 291 195 9 970 839 151 28 21 chr9 50464392 50464534 -73611638 - B1_Mm SINE Alu -1 146 4 9 970 684 191 28 31 chr9 50465305 50465499 -73610673 - B3 SINE B2 -6 189 1 9 970 198 150 0 0 chr9 50465998 50466038 -73610134 + (CTGGGG)n Simple_repeat Simple_repeat 4 43 0 9 970 426 246 25 25 chr9 50468350 50468471 -73607701 + B1_Mur1 SINE Alu 16 136 -13 9 970 1085 257 159 17 chr9 50468589 50469048 -73607124 + RCHARR1 DNA MER1_type 44 567 -407 9 970 497 16 16 0 chr9 50469078 50469140 -73607032 + (TA)n Simple_repeat Simple_repeat 2 64 0 9 970 262 252 75 27 chr9 50469320 50469467 -73606705 + L1M1 LINE L1 5705 5858 -442 9 970 245 182 17 68 chr9 50469987 50470046 -73606126 + ID_B1 SINE B4 169 224 0 9 970 502 157 0 12 chr9 50470056 50470140 -73606032 + PB1D9 SINE Alu 29 111 -9 9 970 276 351 70 0 chr9 50470315 50470429 -73605743 + PB1 SINE Alu 2 123 -4 9 970 368 226 84 9 chr9 50471315 50471422 -73604750 - B1F SINE Alu -26 123 9 9 970 782 171 0 28 chr9 50471625 50471769 -73604403 - B1_Mur2 SINE Alu 0 149 10 9 970 941 120 286 0 chr9 50471869 50472044 -73604128 - URR1B DNA MER1_type 0 225 1 9 970 353 291 87 0 chr9 50474427 50474526 -73601646 + PB1D7 SINE Alu 12 121 -28 9 970 1341 80 42 11 chr9 50474526 50474715 -73601457 - B2_Mm2 SINE B2 0 195 1 9 970 335 291 87 0 chr9 50474715 50474742 -73601430 + B1F SINE Alu 122 148 -1 9 970 427 172 113 65 chr9 50474769 50474893 -73601279 + RSINE1 SINE B4 3 132 -33 9 970 1821 147 68 30 chr9 50474897 50475297 -73600875 + ORR1C1-int LTR MaLR 1095 1509 0 9 970 1426 182 122 60 chr9 50475297 50475465 -73600707 + ORR1C1 LTR MaLR 3 163 -215 9 970 369 0 0 0 chr9 50475465 50475506 -73600666 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 9 970 1426 182 122 60 chr9 50475506 50475688 -73600484 + ORR1C1 LTR MaLR 164 374 -4 9 970 180 0 0 0 chr9 50476237 50476257 -73599915 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 970 278 295 113 16 chr9 50476259 50476383 -73599789 - B1F SINE Alu 0 149 14 9 970 743 188 0 0 chr9 50476424 50476557 -73599615 + B1_Mus2 SINE Alu 9 141 -6 9 970 224 250 0 16 chr9 50476696 50476757 -73599415 - ID4 SINE ID -23 60 1 9 970 731 121 16 41 chr9 50476990 50477111 -73599061 + PB1D9 SINE Alu 3 120 0 9 970 620 189 28 42 chr9 50477191 50477335 -73598837 + B1_Mur1 SINE Alu 2 143 -6 9 970 224 91 23 0 chr9 50477353 50477397 -73598775 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 9 970 643 224 20 53 chr9 50478164 50478315 -73597857 - B1_Mur1 SINE Alu -2 147 2 9 970 552 223 23 15 chr9 50478335 50478467 -73597705 - RSINE1 SINE B4 -31 134 2 9 970 277 82 0 39 chr9 50478663 50478714 -73597458 + (GGA)n Simple_repeat Simple_repeat 2 50 0 9 970 281 249 147 0 chr9 50478922 50479045 -73597127 + B3 SINE B2 41 197 -1 9 970 575 184 101 0 chr9 50479077 50479186 -73596986 + PB1D9 SINE Alu 1 120 0 9 970 3364 54 9 5 chr9 50479202 50479632 -73596540 + L1Md_F2 LINE L1 6151 6582 0 9 970 304 186 34 0 chr9 50479664 50479723 -73596449 + B1_Mur1 SINE Alu 88 148 -1 9 970 491 138 0 11 chr9 50479724 50479812 -73596360 + (GAAAA)n Simple_repeat Simple_repeat 3 89 0 9 970 1033 224 10 5 chr9 50480214 50480411 -73595761 + B3 SINE B2 5 202 -14 9 970 923 225 47 5 chr9 50480451 50480665 -73595507 - ID_B1 SINE B4 0 224 2 9 970 3239 46 5 8 chr9 50480694 50481090 -73595082 + MTA_Mm LTR MaLR 2 396 0 9 970 324 233 67 0 chr9 50481115 50481205 -73594967 - B1F1 SINE Alu -39 110 15 9 970 207 0 0 0 chr9 50481628 50481651 -73594521 + (T)n Simple_repeat Simple_repeat 1 23 0 9 970 2332 82 7 6 chr9 50481733 50482068 -73594104 - L1_Mm LINE L1 -460 5423 5119 9 970 674 157 102 22 chr9 50482069 50482162 -73594010 - B1_Mur2 SINE Alu -1 148 56 9 970 180 0 0 0 chr9 50482162 50482182 -73593990 + (TCTCTG)n Simple_repeat Simple_repeat 3 22 0 9 970 674 157 102 22 chr9 50482182 50482225 -73593947 - B1_Mur2 SINE Alu -94 55 2 9 970 251 207 0 0 chr9 50482325 50482383 -73593789 + GA-rich Low_complexity Low_complexity 2 59 0 9 970 456 222 7 93 chr9 50482520 50482659 -73593513 - L1MB5 LINE L1 -272 5902 5776 9 970 353 253 194 29 chr9 50482686 50482896 -73593276 - L1MB5 LINE L1 -518 5662 5413 9 970 201 74 0 0 chr9 50482898 50482925 -73593247 + (T)n Simple_repeat Simple_repeat 1 27 0 9 970 804 207 28 6 chr9 50483012 50483192 -73592980 - B3A SINE B2 -13 185 2 9 970 360 260 73 16 chr9 50483308 50483491 -73592681 - L1MB5 LINE L1 -760 5383 5194 9 970 390 289 57 9 chr9 50483494 50483630 -73592542 - B1_Mur1 SINE Alu -7 143 2 9 970 224 320 116 8 chr9 50483520 50483649 -73592523 - B4 SINE B4 -88 204 62 9 970 289 294 69 0 chr9 50483674 50483776 -73592396 - L1MB5 LINE L1 -1011 5129 5021 9 970 453 198 92 114 chr9 50483953 50484060 -73592112 + B3A SINE B2 58 160 -35 9 970 510 17 0 0 chr9 50484060 50484119 -73592053 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 970 270 198 92 114 chr9 50484119 50484142 -73592030 + B2_Mm2 SINE B2 161 185 -10 9 970 429 242 100 0 chr9 50484974 50485094 -73591078 + RSINE1 SINE B4 1 132 -33 9 970 674 207 61 200 chr9 50485281 50485740 -73590432 + RLTR11B LTR ERVK 1 395 -58 9 970 471 18 0 0 chr9 50485885 50485941 -73590231 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 970 264 260 68 0 chr9 50486082 50486155 -73590017 + B1_Mur2 SINE Alu 17 94 -55 9 970 551 233 58 0 chr9 50486162 50486282 -73589890 + ID_B1 SINE B4 97 223 -1 9 970 875 171 28 6 chr9 50486690 50486866 -73589306 + B3 SINE B2 37 216 0 9 970 953 135 324 13 chr9 50487539 50487764 -73588408 + Lx7 LINE L1 4727 5021 -859 9 970 762 161 230 5 chr9 50487767 50487954 -73588218 + RLTR20B1 LTR ERVK 1 229 -334 9 970 360 0 0 0 chr9 50487955 50487995 -73588177 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 970 255 229 79 67 chr9 50488000 50488089 -73588083 + RLTR20B1 LTR ERVK 445 534 0 9 970 3627 205 117 7 chr9 50488089 50489443 -73586729 + Lx7 LINE L1 5018 6523 -1173 9 970 348 291 51 0 chr9 50490860 50490977 -73585195 + B4 SINE B4 1 123 -169 9 970 951 91 17 0 chr9 50491205 50491380 -73584792 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 970 263 273 69 29 chr9 50493475 50493504 -73582668 - B1F1 SINE Alu -22 127 99 9 970 771 163 265 17 chr9 50493504 50493685 -73582487 - URR1A DNA MER1_type 0 226 1 9 970 285 273 69 29 chr9 50493685 50493757 -73582415 - PB1D10 SINE Alu -51 98 22 9 970 390 196 0 0 chr9 50493978 50494090 -73582082 + (TG)n Simple_repeat Simple_repeat 1 112 0 9 970 270 0 0 0 chr9 50494540 50494570 -73581602 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 970 1161 160 19 19 chr9 50494580 50494796 -73581376 + B3 SINE B2 1 216 0 9 970 22 0 0 0 chr9 50495402 50495424 -73580748 + AT_rich Low_complexity Low_complexity 1 22 0 9 970 467 190 0 0 chr9 50496331 50496410 -73579762 - B1F2 SINE Alu -7 142 64 9 970 396 0 0 0 chr9 50496904 50496948 -73579224 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 970 301 300 100 0 chr9 50498253 50498353 -73577819 - PB1D10 SINE Alu -7 110 1 9 970 621 272 25 31 chr9 50498353 50498435 -73577737 - ID SINE ID -143 81 1 9 970 500 250 0 0 chr9 50498950 50499050 -73577122 - B1_Mur1 SINE Alu -9 140 41 9 970 662 270 32 16 chr9 50499074 50499262 -73576910 - B3A SINE B2 0 198 8 1 970 198 0 0 0 chr9 50499262 50499284 -73576888 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 970 387 248 41 142 chr9 50499287 50499456 -73576716 - RSINE1 SINE B4 -10 155 4 1 970 288 0 0 0 chr9 50499464 50499496 -73576676 + (T)n Simple_repeat Simple_repeat 1 32 0 1 970 954 55 0 0 chr9 50499498 50499626 -73576546 - B1_Mm SINE Alu 0 147 20 1 970 493 153 0 209 chr9 50499626 50499678 -73576494 - ID_B1 SINE B4 0 222 81 1 970 232 140 23 23 chr9 50499647 50499691 -73576481 - MT2B LTR ERVL -314 287 244 1 970 593 89 22 0 chr9 50499910 50500000 -73576172 + L1Md_T LINE L1 6416 6507 -75 1 970 599 13 0 0 chr9 50500000 50500075 -73576097 + L1Md_T LINE L1 6508 6582 0 1 970 40 0 0 0 chr9 50500721 50500761 -73575411 + AT_rich Low_complexity Low_complexity 1 40 0 2 970 402 273 77 85 chr9 50502022 50502187 -73573985 + MTD LTR MaLR 230 390 -31 3 970 258 32 0 0 chr9 50502187 50502218 -73573954 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 970 402 248 85 62 chr9 50502218 50502252 -73573920 + MTD LTR MaLR 389 417 -2 3 970 971 104 37 0 chr9 50502363 50502527 -73573645 + Lx2B LINE L1 6831 7000 0 5 970 202 109 36 18 chr9 50502533 50502589 -73573583 + A-rich Low_complexity Low_complexity 4 60 0 6 970 818 118 7 56 chr9 50502768 50502911 -73573261 + B1_Mur4 SINE Alu 4 139 -11 7 970 198 0 0 0 chr9 50502911 50502933 -73573239 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 8 970 635 264 15 31 chr9 50503046 50503211 -73572961 - ID_B1 SINE B4 -75 217 58 9 970 26 30 0 0 chr9 50503887 50503920 -73572252 + AT_rich Low_complexity Low_complexity 1 33 0 1 970 718 251 23 28 chr9 50504010 50504186 -73571986 - B3A SINE B2 -16 182 8 1 970 1165 186 0 5 chr9 50504542 50504747 -73571425 + B3 SINE B2 3 206 -10 1 970 320 245 99 21 chr9 50508337 50508479 -73567693 + L1MB5 LINE L1 6012 6164 -10 1 970 538 194 10 0 chr9 50510267 50510370 -73565802 + PB1D10 SINE Alu 1 104 -13 1 970 447 19 0 0 chr9 50510383 50510435 -73565737 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 970 261 0 0 0 chr9 50510435 50510463 -73565709 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 970 193 29 0 56 chr9 50510492 50510528 -73565644 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 970 331 279 103 32 chr9 50510848 50510974 -73565198 + ID_B1 SINE B4 87 221 -3 1 970 440 252 0 53 chr9 50510863 50510976 -73565196 + PB1 SINE Alu 21 127 0 1 970 225 312 0 24 chr9 50510982 50511064 -73565108 + ID4 SINE ID 3 82 -1 2 970 585 234 98 133 chr9 50511854 50511955 -73564217 + MER33 DNA MER1_type 20 127 -197 2 970 225 0 0 0 chr9 50511955 50511980 -73564192 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 970 585 234 98 133 chr9 50511980 50512021 -73564151 + MER33 DNA MER1_type 128 153 -171 2 970 1083 172 33 28 chr9 50512021 50512236 -73563936 + B3 SINE B2 1 216 0 2 970 585 234 98 133 chr9 50512236 50512408 -73563764 + MER33 DNA MER1_type 154 324 0 2 970 450 0 0 0 chr9 50512825 50512875 -73563297 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 970 253 323 28 84 chr9 50513305 50513447 -73562725 + MT2B LTR ERVL 145 278 -323 2 970 517 248 31 8 chr9 50513339 50513469 -73562703 + B1F2 SINE Alu 12 144 -5 2 970 303 28 0 0 chr9 50513499 50513535 -73562637 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 970 944 261 42 0 chr9 50513557 50513772 -73562400 + ID_B1 SINE B4 1 224 0 2 970 357 297 40 0 chr9 50514594 50514695 -73561477 - L2a LINE L2 0 3426 3322 2 970 442 147 0 51 chr9 50514966 50515045 -73561127 + ID_B1 SINE B4 149 223 -1 3 970 395 328 104 71 chr9 50515050 50515388 -73560784 - L2a LINE L2 -429 2990 2642 2 970 1004 99 42 0 chr9 50515548 50515690 -73560482 + B1_Mus1 SINE Alu 1 148 0 3 970 306 0 0 0 chr9 50515690 50515724 -73560448 + (A)n Simple_repeat Simple_repeat 1 34 0 3 970 434 276 132 79 chr9 50515934 50516162 -73560010 - B4A SINE B4 -51 241 2 3 970 1020 218 71 132 chr9 50516300 50516665 -73559507 + MTE2b LTR MaLR 1 343 -36 3 970 1125 90 0 0 chr9 50516854 50517142 -73559030 + (TG)n Simple_repeat Simple_repeat 1 288 0 3 970 222 250 105 74 chr9 50517178 50517273 -73558899 + MIRb SINE MIR 34 131 -137 3 970 540 187 283 0 chr9 50517341 50517507 -73558665 - B3 SINE B2 -1 215 3 3 970 462 18 0 0 chr9 50518314 50518369 -73557803 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 970 596 207 99 0 chr9 50518390 50518511 -73557661 - B3 SINE B2 -81 135 3 3 970 207 275 48 36 chr9 50518699 50518782 -73557390 + L2c LINE L2 3271 3354 -33 4 970 22 0 0 0 chr9 50519983 50520005 -73556167 + AT_rich Low_complexity Low_complexity 1 22 0 4 970 272 325 0 0 chr9 50520272 50520352 -73555820 - ID4 SINE ID -2 81 2 4 970 369 0 0 0 chr9 50520436 50520477 -73555695 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 970 339 25 0 0 chr9 50520477 50520516 -73555656 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 970 687 277 0 0 chr9 50520526 50520663 -73555509 - RSINE1 SINE B4 -28 137 1 4 970 216 0 0 0 chr9 50520710 50520734 -73555438 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 970 183 42 0 0 chr9 50520734 50520758 -73555414 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 970 343 252 141 16 chr9 50521052 50521173 -73554999 - B1F2 SINE Alu -13 136 1 4 970 211 336 78 12 chr9 50521385 50521506 -73554666 + L2c LINE L2 3043 3166 -221 4 970 786 259 55 28 chr9 50521613 50521831 -73554341 + B4A SINE B4 41 264 -28 5 970 363 73 0 0 chr9 50521834 50521889 -73554283 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 970 530 263 7 16 chr9 50521922 50522367 -73553805 + (CA)n Simple_repeat Simple_repeat 1 441 0 5 970 265 345 107 56 chr9 50522833 50523066 -73553106 - MIRb SINE MIR -4 264 20 5 970 385 307 88 0 chr9 50523197 50523334 -73552838 + MER5A1 DNA MER1_type 15 163 -3 5 970 190 245 82 0 chr9 50523574 50523623 -73552549 - L3 LINE CR1 -617 3872 3820 5 970 236 250 117 36 chr9 50523643 50523690 -73552482 - L1MC4a LINE L1 -5 7877 7828 5 970 631 231 141 20 chr9 50523690 50523889 -73552283 + ID_B1 SINE B4 2 224 0 5 970 236 250 117 36 chr9 50523889 50523978 -73552194 - L1MC4a LINE L1 -55 7827 7730 5 970 291 221 147 0 chr9 50524027 50524095 -73552077 - RSINE1 SINE B4 -84 81 4 5 970 320 358 56 60 chr9 50524440 50524672 -73551500 - MIRb SINE MIR -10 258 28 5 970 1061 232 151 27 chr9 50524832 50525169 -73551003 + MTC LTR MaLR 43 421 0 6 970 372 269 97 65 chr9 50525304 50525459 -73550713 + RSINE1 SINE B4 4 163 -2 6 970 467 285 31 50 chr9 50526040 50526067 -73550105 + ID_B1 SINE B4 57 212 -12 6 970 630 219 0 8 chr9 50526067 50526199 -73549973 + B1F SINE Alu 7 137 -12 6 970 1320 106 10 26 chr9 50526817 50527011 -73549161 + B2_Mm2 SINE B2 2 192 -3 6 970 955 152 0 7 chr9 50527270 50527416 -73548756 + B1_Mur4 SINE Alu 1 145 -5 6 970 271 305 12 0 chr9 50527443 50527525 -73548647 - ID4_ SINE ID 0 83 1 6 970 345 200 80 0 chr9 50527603 50527678 -73548494 - RSINE1 SINE B4 -9 156 76 6 970 1251 181 5 0 chr9 50527725 50527930 -73548242 - B3 SINE B2 -10 206 1 6 970 339 25 0 0 chr9 50528104 50528144 -73548028 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 970 480 300 35 35 chr9 50528237 50528359 -73547813 + B4 SINE B4 145 269 -23 7 970 315 0 0 0 chr9 50528359 50528394 -73547778 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 970 480 300 35 35 chr9 50528394 50528416 -73547756 + B4 SINE B4 270 289 -3 7 970 800 207 22 44 chr9 50528823 50529005 -73547167 + B3 SINE B2 2 179 -37 7 970 189 0 0 0 chr9 50529811 50529832 -73546340 + (TTG)n Simple_repeat Simple_repeat 2 22 0 7 970 970 138 0 0 chr9 50529832 50529970 -73546202 - B1_Mus1 SINE Alu -10 138 1 7 970 450 0 0 0 chr9 50531082 50531132 -73545040 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 7 970 614 244 12 42 chr9 50531148 50531315 -73544857 - RSINE1 SINE B4 -3 162 1 7 970 234 240 39 39 chr9 50531336 50531414 -73544758 - 7SLRNA srpRNA srpRNA -226 88 11 7 970 336 277 88 18 chr9 50531657 50531771 -73544401 + L2b LINE L2 3248 3369 -6 7 970 610 274 0 0 chr9 50532189 50532324 -73543848 + ID_B1 SINE B4 83 217 -7 7 970 1117 222 61 19 chr9 50532329 50532591 -73543581 + B4A SINE B4 2 274 -18 8 970 558 171 0 0 chr9 50532591 50532743 -73543429 + GA-rich Low_complexity Low_complexity 1 152 0 8 970 237 151 0 0 chr9 50532734 50532787 -73543385 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 970 516 95 0 0 chr9 50532994 50533078 -73543094 + (TG)n Simple_repeat Simple_repeat 1 84 0 8 970 232 206 56 56 chr9 50534779 50534851 -73541321 + ID4_ SINE ID 2 73 -10 8 970 378 0 0 0 chr9 50534968 50535010 -73541162 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 970 591 112 0 0 chr9 50536400 50536489 -73539683 + (CA)n Simple_repeat Simple_repeat 1 89 0 8 970 384 191 54 33 chr9 50536886 50536978 -73539194 + RSINE1 SINE B4 8 101 -64 8 970 261 0 0 0 chr9 50537125 50537154 -73539018 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 970 366 217 10 73 chr9 50537169 50537267 -73538905 + B1_Mur1 SINE Alu 55 144 -5 8 970 225 313 117 42 chr9 50537174 50537294 -73538878 + MT2B LTR ERVL 219 347 -254 9 970 184 250 23 0 chr9 50537303 50537347 -73538825 - L3 LINE CR1 -1385 3104 3060 9 970 204 97 0 0 chr9 50537465 50537496 -73538676 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 9 970 186 264 38 0 chr9 50537549 50537602 -73538570 - MIRc SINE MIR -142 126 72 9 970 648 277 0 0 chr9 50538344 50538485 -73537687 - ID_B1 SINE B4 0 224 84 9 970 653 229 38 54 chr9 50538495 50538680 -73537492 - B3A SINE B2 -16 182 1 9 970 183 42 0 0 chr9 50538915 50538939 -73537233 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 9 970 198 0 0 0 chr9 50538977 50538999 -73537173 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 9 970 420 248 125 0 chr9 50539030 50539169 -73537003 + MER3 DNA MER1_type 9 168 -41 9 970 1230 90 0 12 chr9 50539228 50539245 -73536927 - B2_Mm1a SINE B2 -21 172 156 9 970 285 29 0 0 chr9 50539245 50539279 -73536893 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 9 970 1230 90 0 12 chr9 50539279 50539430 -73536742 - B2_Mm1a SINE B2 -38 155 6 9 970 212 287 124 22 chr9 50539966 50540055 -73536117 - MIRb SINE MIR -122 146 49 1 970 399 41 0 0 chr9 50540150 50540199 -73535973 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 1 970 360 0 0 0 chr9 50540586 50540626 -73535546 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 970 207 277 73 68 chr9 50541241 50541446 -73534726 + L2a LINE L2 3044 3249 -177 1 970 812 216 176 9 chr9 50541540 50541773 -73534399 - B4 SINE B4 -19 273 2 1 970 278 300 38 0 chr9 50541804 50541884 -73534288 - B1F SINE Alu -66 83 1 1 970 230 264 163 44 chr9 50541884 50542019 -73534153 + L2a LINE L2 3268 3418 -8 1 970 894 240 20 10 chr9 50542072 50542270 -73533902 + B3 SINE B2 17 216 0 1 970 653 264 21 0 chr9 50542288 50542432 -73533740 + ID_B1 SINE B4 78 224 0 1 970 275 265 37 127 chr9 50542464 50542598 -73533574 + PB1 SINE Alu 1 122 -5 1 970 278 303 26 0 chr9 50542608 50542684 -73533488 + ID4_ SINE ID 2 79 -4 1 970 288 0 0 0 chr9 50542684 50542716 -73533456 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 970 241 204 73 18 chr9 50543838 50543893 -73532279 + B3A SINE B2 9 66 -132 1 970 456 19 0 0 chr9 50543926 50543979 -73532193 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 970 180 0 0 0 chr9 50543979 50543998 -73532174 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 970 730 242 131 5 chr9 50544183 50544374 -73531798 - B3 SINE B2 -1 215 1 1 970 222 270 143 0 chr9 50544575 50544638 -73531534 + B4A SINE B4 71 142 -150 1 970 467 278 102 8 chr9 50544589 50544716 -73531456 + B1F SINE Alu 9 147 -2 1 970 1095 194 18 45 chr9 50544723 50544763 -73531409 + B3 SINE B2 1 40 -176 1 970 1495 32 15 31 chr9 50544763 50544958 -73531214 + B2_Mm1a SINE B2 1 192 -1 1 970 1095 194 18 45 chr9 50544958 50545138 -73531034 + B3 SINE B2 41 215 -1 1 970 716 174 80 36 chr9 50545299 50545436 -73530736 - B1_Mus1 SINE Alu -5 143 1 1 970 505 250 172 6 chr9 50546033 50546202 -73529970 - B3A SINE B2 0 198 2 1 970 632 265 8 0 chr9 50546514 50546646 -73529526 - ID_B1 SINE B4 -10 214 82 1 970 324 48 0 0 chr9 50547026 50547068 -73529104 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 970 693 194 14 28 chr9 50548089 50548232 -73527940 + ID_B1 SINE B4 83 223 -1 1 970 423 0 0 0 chr9 50548960 50549007 -73527165 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 970 279 0 0 0 chr9 50549007 50549037 -73527135 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 970 517 265 71 62 chr9 50549062 50549287 -73526885 - B4 SINE B4 -63 229 3 1 970 187 378 14 0 chr9 50549674 50549748 -73526424 - L2b LINE L2 -9 3366 3292 1 970 437 352 145 22 chr9 50551722 50552033 -73524139 + L1ME4a LINE L1 5516 5864 -260 1 970 642 256 7 0 chr9 50552103 50552240 -73523932 + B3A SINE B2 8 145 -53 1 970 279 0 0 0 chr9 50552308 50552339 -73523833 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 970 784 173 203 16 chr9 50552343 50552525 -73523647 - B3 SINE B2 0 216 1 1 970 300 339 56 62 chr9 50552763 50552958 -73523214 + MIR SINE MIR 38 231 -31 1 970 260 312 71 71 chr9 50552962 50552987 -73523185 + B4A SINE B4 71 221 -67 1 970 608 246 8 0 chr9 50552987 50553113 -73523059 + B1F2 SINE Alu 17 143 -6 1 970 647 169 79 22 chr9 50553126 50553265 -73522907 + B1_Mur2 SINE Alu 2 148 -1 1 970 513 205 102 18 chr9 50553303 50553431 -73522741 - PB1D9 SINE Alu -13 135 8 1 970 201 244 0 0 chr9 50553476 50553517 -73522655 + L2b LINE L2 3329 3369 -6 1 970 296 296 150 48 chr9 50554057 50554284 -73521888 + MIRb SINE MIR 12 261 -1 1 970 220 366 70 47 chr9 50555334 50555506 -73520666 + B4 SINE B4 33 208 -84 1 970 627 182 35 70 chr9 50555403 50555545 -73520627 + B1_Mur3 SINE Alu 13 149 0 1 970 325 295 60 30 chr9 50555712 50555845 -73520327 + MIR SINE MIR 126 262 0 1 970 399 241 128 9 chr9 50556694 50556803 -73519369 + B1F1 SINE Alu 20 141 -8 1 970 349 180 0 0 chr9 50556820 50556870 -73519302 + ID4_ SINE ID 18 67 -16 1 970 189 0 0 0 chr9 50557064 50557085 -73519087 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 970 530 240 71 8 chr9 50557258 50557384 -73518788 - ID_B1 SINE B4 -4 220 87 1 970 219 88 0 0 chr9 50557679 50557713 -73518459 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 970 273 326 73 66 chr9 50558123 50558274 -73517898 + Charlie4z DNA MER1_type 13 164 -3 1 970 243 0 0 0 chr9 50561954 50561981 -73514191 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 970 231 323 97 0 chr9 50562977 50563070 -73513102 + MER5B DNA MER1_type 24 125 -53 1 970 1027 121 30 90 chr9 50563471 50563671 -73512501 + B2_Mm2 SINE B2 1 188 -7 1 970 942 124 7 33 chr9 50563683 50563833 -73512339 + B1_Mus1 SINE Alu 3 148 0 1 970 618 255 20 7 chr9 50565585 50565735 -73510437 - RSINE1 SINE B4 -12 153 2 1 970 723 184 87 14 chr9 50565895 50566033 -73510139 - B1_Mur2 SINE Alu 0 149 2 1 970 297 0 0 0 chr9 50566552 50566585 -73509587 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 970 330 45 0 0 chr9 50566585 50566628 -73509544 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 970 371 321 41 129 chr9 50566824 50567142 -73509030 - B4A SINE B4 0 292 3 1 970 616 281 6 18 chr9 50567142 50567311 -73508861 - B4A SINE B4 -62 230 64 1 970 312 240 100 0 chr9 50567490 50567590 -73508582 - L1MB5 LINE L1 -182 5992 5883 1 970 674 177 0 65 chr9 50567667 50567806 -73508366 - B1_Mus2 SINE Alu -17 130 1 1 970 1096 204 14 14 chr9 50567819 50568033 -73508139 - B3 SINE B2 -2 214 1 1 970 265 296 104 6 chr9 50568033 50568206 -73507966 - L1MB8 LINE L1 -276 5902 5713 1 970 389 72 0 67 chr9 50568882 50568942 -73507230 - RMER19B LTR ERVK -160 742 687 1 970 243 235 161 0 chr9 50568955 50569036 -73507136 - MLT1H1 LTR MaLR -30 525 432 1 970 36 0 0 0 chr9 50569040 50569076 -73507096 + AT_rich Low_complexity Low_complexity 1 36 0 1 970 352 277 128 54 chr9 50569128 50569277 -73506895 + L1M2 LINE L1 3362 3521 -2622 1 970 410 53 0 17 chr9 50569330 50569388 -73506784 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 970 280 247 82 0 chr9 50569458 50569543 -73506629 + L1MC LINE L1 3617 3708 -2438 1 970 201 132 0 0 chr9 50569629 50569667 -73506505 + (A)n Simple_repeat Simple_repeat 1 38 0 1 970 816 171 53 32 chr9 50569865 50570166 -73506006 - RMER17C LTR ERVK 0 410 1 1 970 338 286 40 40 chr9 50570292 50570416 -73505756 + MER110 LTR ERV1 367 490 -1 1 970 346 279 9 55 chr9 50570755 50570865 -73505307 - B1F SINE Alu -12 137 33 1 970 188 35 35 0 chr9 50570901 50570930 -73505242 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 1 970 234 301 0 27 chr9 50570952 50571027 -73505145 - ID4 SINE ID -9 74 2 1 970 273 225 149 40 chr9 50571041 50571115 -73505057 - PB1D10 SINE Alu -32 85 4 1 970 373 229 36 18 chr9 50571201 50571312 -73504860 - Lx9 LINE L1 -5 7639 7527 1 970 567 29 0 0 chr9 50571312 50571381 -73504791 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 970 1909 202 47 17 chr9 50571394 50571801 -73504371 - MTD LTR MaLR 0 419 1 1 970 733 236 19 5 chr9 50572445 50572624 -73503548 + B3 SINE B2 1 181 -17 1 970 258 32 0 0 chr9 50574218 50574249 -73501923 + (T)n Simple_repeat Simple_repeat 1 31 0 1 970 234 351 86 17 chr9 50574285 50574459 -73501713 + L2 LINE L2 2643 2828 -591 1 970 1194 105 44 6 chr9 50574501 50574683 -73501489 - B2_Mm2 SINE B2 -4 191 3 1 970 1080 113 0 0 chr9 50575025 50575167 -73501005 - B1_Mus2 SINE Alu -5 142 1 1 970 504 221 39 0 chr9 50577180 50577284 -73498888 - RSINE1 SINE B4 -35 130 23 1 970 207 0 0 0 chr9 50577287 50577310 -73498862 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 970 601 200 188 0 chr9 50577317 50577487 -73498685 - B3 SINE B2 -13 203 2 1 970 305 355 85 23 chr9 50577525 50577701 -73498471 + MIR SINE MIR 2 188 -74 1 970 310 252 27 100 chr9 50578555 50578705 -73497467 - L1MCa LINE L1 -4543 1965 1827 1 970 790 148 8 0 chr9 50578936 50579064 -73497108 - B3 SINE B2 -86 130 2 1 970 215 73 0 68 chr9 50579324 50579383 -73496789 + (CAAAC)n Simple_repeat Simple_repeat 2 56 0 1 970 258 56 0 0 chr9 50580829 50580865 -73495307 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 1 970 329 218 12 71 chr9 50580941 50581025 -73495147 + PB1D9 SINE Alu 41 119 -1 1 970 3980 41 10 12 chr9 50581025 50581523 -73494649 - L1_Mus3 LINE L1 -547 6091 5595 1 970 4449 46 25 13 chr9 50581523 50582076 -73494096 + L1_Mus3 LINE L1 6077 6636 -2 1 970 200 283 50 0 chr9 50582319 50582379 -73493793 - MIRb SINE MIR -185 83 21 1 970 261 243 0 0 chr9 50582733 50582803 -73493369 + T-rich Low_complexity Low_complexity 2 71 0 1 970 198 103 0 0 chr9 50583522 50583551 -73492621 + (CGG)n Simple_repeat Simple_repeat 2 30 0 1 970 405 0 0 0 chr9 50584328 50584373 -73491799 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 970 314 275 12 0 chr9 50584812 50584892 -73491280 - ID4 SINE ID -2 81 1 1 970 729 117 9 0 chr9 50585094 50585205 -73490967 + PB1D9 SINE Alu 1 112 -8 1 970 2175 119 15 6 chr9 50585562 50585900 -73490272 + MTC LTR MaLR 1 341 -80 1 970 286 247 0 0 chr9 50585902 50585975 -73490197 + Lx6 LINE L1 7212 7284 -176 2 970 1388 95 16 10 chr9 50586275 50586467 -73489705 - B2_Mm2 SINE B2 0 195 3 2 970 238 132 0 0 chr9 50586627 50586665 -73489507 + MTD LTR MaLR 348 385 -34 2 970 186 43 0 0 chr9 50587385 50587408 -73488764 + (C)n Simple_repeat Simple_repeat 1 23 0 2 970 324 223 10 50 chr9 50587680 50587779 -73488393 - L1MDa LINE L1 -4931 1702 1608 2 970 288 125 47 0 chr9 50587804 50587868 -73488304 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 970 571 310 31 41 chr9 50587906 50588199 -73487973 - B4A SINE B4 -2 290 1 2 970 195 129 0 0 chr9 50588220 50588251 -73487921 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 970 580 241 58 7 chr9 50588254 50588392 -73487780 - B3A SINE B2 -41 157 13 2 970 628 220 152 18 chr9 50588900 50589111 -73487061 - MTD LTR MaLR -39 380 167 2 970 430 208 79 0 chr9 50589081 50589182 -73486990 - B1_Mur3 SINE Alu -35 114 6 2 970 771 304 19 10 chr9 50589181 50589390 -73486782 - MTD LTR MaLR -204 215 5 2 970 1005 128 13 0 chr9 50589562 50589718 -73486454 + URR1A DNA MER1_type 69 226 0 2 970 248 292 80 0 chr9 50590016 50590129 -73486043 - L1M LINE L1 -756 5417 5296 2 970 1059 184 43 10 chr9 50590364 50590572 -73485600 + B3 SINE B2 1 215 -1 2 970 639 256 0 0 chr9 50590797 50590930 -73485242 + B1F SINE Alu 1 133 -16 2 970 661 224 135 73 chr9 50591895 50592073 -73484099 + B3 SINE B2 1 189 -6 2 970 230 310 0 0 chr9 50592465 50592523 -73483649 + tRNA-Ala-GCA tRNA tRNA 7 64 -11 2 970 459 321 26 37 chr9 50592774 50592965 -73483207 + L1MEd LINE L1 922 1110 -5009 2 970 3173 249 68 28 chr9 50593239 50593528 -73482644 - Lx8 LINE L1 -398 7075 6776 2 970 785 234 24 57 chr9 50593528 50593737 -73482435 - B3 SINE B2 -14 202 1 2 121 3173 249 68 28 chr9 50593737 50594298 -73481874 - Lx8 LINE L1 -698 6775 6191 2 971 932 111 14 20 chr9 50594475 50594622 -73481550 - B1_Mus2 SINE Alu 0 147 2 2 971 404 284 238 16 chr9 50594660 50594853 -73481319 - MIRb SINE MIR -31 237 2 2 971 6182 83 21 9 chr9 50594916 50595772 -73480400 - Lx3_Mus LINE L1 -8 7001 6136 2 971 1698 11 16 0 chr9 50595810 50596000 -73480172 - B2_Mm1a SINE B2 0 193 1 2 971 808 274 47 5 chr9 50597253 50597466 -73478706 - ID_B1 SINE B4 0 224 3 2 971 236 310 91 23 chr9 50597951 50598083 -73478089 - MIR SINE MIR -39 223 83 2 971 889 8 246 0 chr9 50598118 50598236 -73477936 - B1_Mm SINE Alu 0 147 1 2 971 393 221 331 0 chr9 50598503 50598657 -73477515 - B3 SINE B2 -10 206 2 2 971 682 225 142 91 chr9 50598712 50598888 -73477284 + B3A SINE B2 5 189 -6 2 971 1171 96 44 33 chr9 50598892 50599075 -73477097 + B2_Mm2 SINE B2 1 185 -10 2 971 1156 52 0 0 chr9 50599075 50599210 -73476962 + B1_Mus2 SINE Alu 1 136 -11 2 971 652 296 55 0 chr9 50599429 50599628 -73476544 + B4A SINE B4 38 247 -45 2 971 377 267 20 118 chr9 50599622 50599775 -73476397 + RSINE1 SINE B4 28 165 0 2 971 21 0 0 0 chr9 50599825 50599846 -73476326 + AT_rich Low_complexity Low_complexity 1 21 0 2 971 206 128 0 25 chr9 50600630 50600670 -73475502 + CT-rich Low_complexity Low_complexity 2 40 0 2 971 248 255 41 41 chr9 50600688 50600786 -73475386 - ID_B1 SINE B4 -55 169 72 2 971 465 247 0 1 chr9 50600912 50601034 -73475138 - B1F SINE Alu -24 124 4 2 971 237 286 11 56 chr9 50600957 50601046 -73475126 - B4A SINE B4 -127 165 81 2 971 357 248 108 25 chr9 50601063 50601183 -73474989 + ID_B1 SINE B4 82 211 -13 2 971 1551 22 60 0 chr9 50601188 50601370 -73474802 - B2_Mm1a SINE B2 0 193 1 2 971 308 270 78 105 chr9 50601370 50601397 -73474775 + B1F2 SINE Alu 125 149 0 2 971 339 140 149 65 chr9 50602715 50602822 -73473350 - B1_Mus1 SINE Alu 0 148 33 2 971 1035 170 71 10 chr9 50603928 50604124 -73472048 - B3 SINE B2 -5 211 4 2 971 200 333 109 15 chr9 50604285 50604422 -73471750 - MIRb SINE MIR -96 172 23 2 971 1054 211 29 0 chr9 50604502 50604711 -73471461 + B3 SINE B2 1 215 -1 2 971 408 40 0 0 chr9 50604855 50604905 -73471267 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 971 290 193 0 26 chr9 50605769 50605886 -73470286 + T-rich Low_complexity Low_complexity 1 114 0 2 971 534 265 8 17 chr9 50606960 50607079 -73469093 + B3A SINE B2 1 118 -80 2 971 427 287 126 37 chr9 50607069 50607086 -73469086 + CYRA11_Mm Unknown Y-chromosome 162 242 -375 2 971 905 144 160 31 chr9 50607086 50607280 -73468892 - URR1A DNA MER1_type -7 219 1 2 971 427 287 126 37 chr9 50607280 50607315 -73468857 + CYRA11_Mm Unknown Y-chromosome 243 429 -188 2 971 320 94 19 0 chr9 50607322 50607375 -73468797 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 971 297 238 16 0 chr9 50607440 50607503 -73468669 - ID4_ SINE ID -18 65 2 2 971 400 305 75 48 chr9 50607785 50607971 -73468201 - MLT1A1 LTR MaLR -2 406 216 2 971 1112 152 119 15 chr9 50608560 50608761 -73467411 + URR1A DNA MER1_type 1 222 -4 2 971 180 0 0 0 chr9 50609364 50609384 -73466788 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 2 971 340 186 180 34 chr9 50610253 50610342 -73465830 + B1_Mur2 SINE Alu 37 138 -11 2 971 3841 224 73 41 chr9 50610862 50611893 -73464279 - RMER1B Other Other -1 1065 2 2 971 180 0 0 0 chr9 50612127 50612147 -73464025 + (ATTTG)n Simple_repeat Simple_repeat 2 21 0 2 971 868 189 0 0 chr9 50612591 50612734 -73463438 - B1_Mur1 SINE Alu -2 147 5 2 971 360 250 120 0 chr9 50612989 50613089 -73463083 + PB1D7 SINE Alu 2 113 -7 2 971 23 0 0 0 chr9 50613098 50613121 -73463051 + AT_rich Low_complexity Low_complexity 1 23 0 2 971 30 0 0 0 chr9 50613765 50613795 -73462377 + AT_rich Low_complexity Low_complexity 1 30 0 2 971 1009 228 25 0 chr9 50613795 50613997 -73462175 - B3 SINE B2 -9 207 1 2 971 216 86 0 0 chr9 50614496 50614531 -73461641 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 971 261 95 31 16 chr9 50614648 50614712 -73461460 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 2 971 787 218 45 17 chr9 50615238 50615415 -73460757 - B3 SINE B2 -28 188 7 2 971 621 260 23 113 chr9 50615542 50615763 -73460409 - B4 SINE B4 -6 286 86 2 971 541 273 63 59 chr9 50615761 50615983 -73460189 - B4A SINE B4 -61 231 9 2 971 306 98 0 0 chr9 50617024 50617075 -73459097 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 971 302 244 24 35 chr9 50617911 50617996 -73458176 - ID SINE ID -136 88 5 2 971 234 180 0 0 chr9 50618481 50618531 -73457641 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 2 971 480 237 75 15 chr9 50618532 50618665 -73457507 - B1F2 SINE Alu -7 142 2 2 971 604 279 95 194 chr9 50618696 50618793 -73457379 - MER44D DNA MER2_type -61 644 544 2 971 815 171 28 7 chr9 50618793 50618934 -73457238 + B1_Mus2 SINE Alu 1 144 -3 2 971 1334 279 95 194 chr9 50618934 50619421 -73456751 - Tigger7 DNA MER2_type -162 543 151 2 971 1395 142 264 14 chr9 50619421 50619713 -73456459 - ORR1B2 LTR MaLR -2 365 1 2 971 1334 296 78 14 chr9 50619713 50619835 -73456337 - Tigger7 DNA MER2_type -2341 150 7 2 971 298 324 50 14 chr9 50620475 50620616 -73455556 - RSINE1 SINE B4 -19 146 1 2 971 540 265 8 0 chr9 50620927 50621044 -73455128 - RSINE1 SINE B4 -29 136 19 2 971 375 138 0 0 chr9 50621059 50621117 -73455055 - PB1D10 SINE Alu -1 116 59 2 971 723 242 125 31 chr9 50621810 50622002 -73454170 + ID_B1 SINE B4 15 224 0 2 971 395 346 154 9 chr9 50622151 50622384 -73453788 - Tigger9b DNA MER2_type -350 274 8 2 971 500 258 40 16 chr9 50622392 50622518 -73453654 + RSINE1 SINE B4 6 134 -31 2 971 270 231 0 0 chr9 50622552 50622643 -73453529 + (CATA)n Simple_repeat Simple_repeat 1 91 0 2 971 324 143 0 0 chr9 50622702 50622758 -73453414 + (T)n Simple_repeat Simple_repeat 1 56 0 2 971 1113 77 0 0 chr9 50624165 50624308 -73451864 - B1_Mus1 SINE Alu 0 148 6 2 971 261 0 0 0 chr9 50624316 50624345 -73451827 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2 971 1147 58 0 0 chr9 50624345 50624483 -73451689 - B1_Mus1 SINE Alu -9 139 2 2 971 337 326 50 38 chr9 50624486 50624725 -73451447 - L1_Rod LINE L1 -2698 3149 2908 2 971 783 251 161 9 chr9 50624740 50625045 -73451127 + Lx8 LINE L1 6496 6834 -862 2 971 294 167 137 118 chr9 50625047 50625112 -73451060 - B1_Mur3 SINE Alu 0 149 79 2 971 1267 218 182 60 chr9 50625112 50625633 -73450539 - RMER4B LTR ERVK 0 585 1 2 971 294 167 137 118 chr9 50625633 50625669 -73450503 - B1_Mur3 SINE Alu -71 78 46 2 971 317 280 87 92 chr9 50625670 50625855 -73450317 - L1MEf LINE L1 -5300 900 717 2 971 687 25 0 0 chr9 50627127 50627208 -73448964 + (TTCCC)n Simple_repeat Simple_repeat 4 84 0 2 971 764 193 0 0 chr9 50627228 50627363 -73448809 - B1_Mur4 SINE Alu -15 135 1 2 971 216 0 0 0 chr9 50627881 50627905 -73448267 + (A)n Simple_repeat Simple_repeat 1 24 0 2 971 521 291 7 0 chr9 50628421 50628572 -73447600 - RSINE1 SINE B4 -12 153 2 2 971 337 320 261 0 chr9 50628685 50628888 -73447284 - L1M5 LINE L1 -529 5633 5378 2 971 241 259 31 94 chr9 50628924 50628988 -73447184 - RMER21B LTR ERV1 -101 846 787 2 971 599 258 194 5 chr9 50629073 50629264 -73446908 - RMER21B LTR ERV1 -270 572 346 2 971 2757 174 313 101 chr9 50629296 50629718 -73446454 + RMER21A LTR ERV1 85 537 -410 2 971 1275 34 0 0 chr9 50629718 50629865 -73446307 - B1_Mus1 SINE Alu -1 147 1 2 971 2757 172 72 120 chr9 50629865 50630200 -73445972 + RMER21A LTR ERV1 538 915 -32 2 971 692 212 7 27 chr9 50631215 50631365 -73444807 - B1F1 SINE Alu -1 148 2 2 971 288 339 147 83 chr9 50631582 50632065 -73444107 - MLT2B2 LTR ERVL -1 514 1 3 971 500 311 70 15 chr9 50632207 50632406 -73443766 - MLT1A LTR MaLR -8 366 157 3 971 461 286 9 0 chr9 50632516 50632621 -73443551 - PB1D10 SINE Alu -8 109 4 3 971 295 292 79 33 chr9 50632621 50632681 -73443491 - B4A SINE B4 -201 91 25 3 971 236 205 253 0 chr9 50632681 50632764 -73443408 - MER46C DNA MER2_type 0 338 235 3 971 515 249 83 99 chr9 50632853 50632884 -73443288 - B2_Mm2 SINE B2 -6 189 161 3 971 258 81 0 0 chr9 50632884 50632921 -73443251 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 971 750 249 83 99 chr9 50632921 50633081 -73443091 - B3A SINE B2 -32 166 1 3 971 345 278 51 25 chr9 50633202 50633320 -73442852 - L1MC LINE L1 -631 5702 5582 3 971 1354 76 33 0 chr9 50633473 50633657 -73442515 + B2_Mm2 SINE B2 2 191 -4 3 971 26 0 0 0 chr9 50633663 50633689 -73442483 + AT_rich Low_complexity Low_complexity 1 26 0 3 971 223 175 25 0 chr9 50633698 50633738 -73442434 + CT-rich Low_complexity Low_complexity 1 41 0 3 971 334 244 13 0 chr9 50633739 50633817 -73442355 - ID2 SINE ID -1 82 4 3 971 639 299 31 4 chr9 50634331 50634556 -73441616 + RMER1C Other Other 492 722 -620 3 971 1149 195 129 58 chr9 50634577 50634888 -73441284 - Lx5 LINE L1 0 7050 6718 3 971 1001 260 92 47 chr9 50634891 50635852 -73440320 - L1MC LINE L1 -815 5331 4264 3 971 24 0 0 0 chr9 50635852 50635876 -73440296 + AT_rich Low_complexity Low_complexity 1 24 0 3 971 207 0 0 0 chr9 50636169 50636192 -73439980 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 971 458 137 90 4 chr9 50636192 50636304 -73439868 - B1_Mur3 SINE Alu -12 137 17 3 971 394 113 0 0 chr9 50636260 50636313 -73439859 + B1_Mus2 SINE Alu 17 69 -78 3 971 405 0 0 0 chr9 50636479 50636524 -73439648 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 971 586 207 25 25 chr9 50636543 50636662 -73439510 - RSINE1 SINE B4 -43 122 4 3 971 293 252 91 0 chr9 50636791 50636890 -73439282 - L1MB7 LINE L1 -195 5989 5882 3 971 987 243 134 37 chr9 50636895 50637216 -73438956 + ORR1E LTR MaLR 6 357 -2 3 971 1415 138 4 13 chr9 50637275 50637503 -73438669 - MTC LTR MaLR 0 421 196 3 971 2127 51 7 32 chr9 50637503 50637786 -73438386 - L1Md_F3 LINE L1 0 6584 6309 3 971 1061 221 7 95 chr9 50637786 50637842 -73438330 - MTC LTR MaLR -219 177 137 3 971 342 275 14 0 chr9 50637941 50638010 -73438162 + PB1D10 SINE Alu 19 88 -29 3 971 1013 167 84 25 chr9 50637996 50638199 -73437973 - MTC LTR MaLR -203 218 4 3 971 258 198 0 42 chr9 50638783 50638878 -73437294 + CT-rich Low_complexity Low_complexity 3 93 0 3 971 419 226 16 65 chr9 50638910 50639033 -73437139 - PB1D9 SINE Alu -1 119 3 3 971 197 261 163 43 chr9 50639211 50639303 -73436869 + MIRb SINE MIR 114 216 -52 3 971 864 192 19 0 chr9 50639912 50640068 -73436104 - B3 SINE B2 -57 159 1 3 971 23 0 0 0 chr9 50640133 50640156 -73436016 + AT_rich Low_complexity Low_complexity 1 23 0 3 971 284 287 67 34 chr9 50641720 50641839 -73434333 - MLT1G3 LTR MaLR -218 377 255 3 971 532 244 35 32 chr9 50642734 50642928 -73433244 - B3A SINE B2 0 195 1 3 971 1645 42 0 0 chr9 50645454 50645645 -73430527 + B2_Mm1a SINE B2 2 192 -1 3 971 533 175 102 10 chr9 50646316 50646414 -73429758 + PB1D9 SINE Alu 5 111 -9 3 971 465 19 0 0 chr9 50646414 50646468 -73429704 + (CATA)n Simple_repeat Simple_repeat 2 55 0 3 971 1147 108 10 36 chr9 50646771 50646786 -73429386 - B2_Mm2 SINE B2 -7 188 176 3 971 1561 48 11 0 chr9 50646786 50646975 -73429197 - B2_Mm1t SINE B2 -1 192 2 3 971 1147 108 10 36 chr9 50646975 50647003 -73429169 - B2_Mm2 SINE B2 -20 175 150 3 971 333 0 0 0 chr9 50647003 50647040 -73429132 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 971 1147 108 10 36 chr9 50647040 50647188 -73428984 - B2_Mm2 SINE B2 -46 149 1 3 971 739 309 85 116 chr9 50647520 50647670 -73428502 - Looper DNA PiggyBac -3 1555 1404 3 971 852 199 108 0 chr9 50647670 50647856 -73428316 + B3 SINE B2 1 206 -10 3 971 739 309 85 116 chr9 50647856 50647916 -73428256 - Looper DNA PiggyBac -155 1403 1353 3 971 360 0 0 0 chr9 50647916 50647956 -73428216 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 971 429 261 40 40 chr9 50647966 50648114 -73428058 - B1_Mur2 SINE Alu 0 149 2 3 971 739 309 85 116 chr9 50648114 50648711 -73427461 - Looper DNA PiggyBac -211 1347 761 3 971 1181 68 0 0 chr9 50648797 50648944 -73427228 + B1_Mus1 SINE Alu 2 148 0 3 971 272 284 78 10 chr9 50648967 50649070 -73427102 - RSINE1 SINE B4 -33 132 23 3 971 241 299 138 13 chr9 50649070 50649196 -73426976 - Looper DNA PiggyBac -784 774 632 3 971 287 65 22 0 chr9 50649196 50649242 -73426930 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 971 241 299 138 13 chr9 50649242 50649274 -73426898 - Looper DNA PiggyBac -927 631 596 3 971 271 345 71 77 chr9 50650045 50650227 -73425945 + MIRb SINE MIR 20 200 -68 3 971 219 211 197 0 chr9 50651911 50651982 -73424190 - MIRc SINE MIR -12 256 172 3 971 326 274 14 14 chr9 50652714 50652788 -73423384 + ID4_ SINE ID 6 79 -4 3 971 201 188 41 20 chr9 50652898 50652947 -73423225 + (CATA)n Simple_repeat Simple_repeat 3 52 0 3 971 957 163 0 0 chr9 50654088 50654235 -73421937 - B1_Mus2 SINE Alu 0 147 1 3 971 620 188 60 8 chr9 50655181 50655315 -73420857 - B1F SINE Alu -7 142 2 3 971 261 139 0 0 chr9 50655394 50655437 -73420735 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 971 186 307 11 54 chr9 50656428 50656521 -73419651 + MER5B DNA MER1_type 90 178 0 3 971 224 309 0 81 chr9 50659513 50659587 -73416585 - PB1D9 SINE Alu -31 89 22 3 971 1076 89 25 19 chr9 50659632 50659793 -73416379 - B2_Mm2 SINE B2 -6 189 28 3 971 304 326 58 28 chr9 50659879 50660044 -73416128 - MIR3 SINE MIR -75 193 14 3 971 652 264 122 5 chr9 50660515 50660736 -73415436 + MER2 DNA MER2_type 95 341 -4 3 971 432 188 13 3 chr9 50661629 50661720 -73414452 - PB1D9 SINE Alu -32 118 28 3 971 1105 51 58 0 chr9 50661835 50661973 -73414199 + B1_Mus2 SINE Alu 2 147 0 3 971 204 40 0 0 chr9 50661973 50661998 -73414174 + (A)n Simple_repeat Simple_repeat 1 25 0 3 971 270 339 0 0 chr9 50662115 50662177 -73413995 - tRNA-Ala-GCY_ tRNA tRNA -11 64 3 3 971 184 312 169 54 chr9 50662337 50662503 -73413669 - MIRc SINE MIR -65 203 19 3 971 279 312 20 33 chr9 50662768 50662902 -73413270 - PB1D9 SINE Alu -13 136 14 3 971 585 248 0 68 chr9 50662927 50663074 -73413098 - B1_Mur1 SINE Alu -12 137 1 3 971 207 0 0 0 chr9 50663398 50663421 -73412751 + (T)n Simple_repeat Simple_repeat 1 23 0 3 971 723 226 31 12 chr9 50663613 50663774 -73412398 + RSINE1 SINE B4 2 165 0 3 971 375 121 0 0 chr9 50664540 50664598 -73411574 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 971 213 132 0 0 chr9 50664662 50664700 -73411472 + (TGGGGG)n Simple_repeat Simple_repeat 1 38 0 3 971 867 152 271 6 chr9 50666253 50666419 -73409753 - B3 SINE B2 -6 210 1 3 971 2743 38 0 48 chr9 50666470 50666828 -73409344 + L1_Mus1 LINE L1 6227 6567 0 3 971 533 164 8 54 chr9 50667292 50667421 -73408751 - L1Md_F2 LINE L1 -1 6581 6459 3 971 720 178 100 8 chr9 50667422 50667552 -73408620 - B1_Mur2 SINE Alu -1 148 7 3 971 197 240 20 20 chr9 50667555 50667606 -73408566 - L2b LINE L2 -250 3125 3075 3 971 237 241 35 0 chr9 50667862 50667920 -73408252 - ID4 SINE ID -20 63 4 3 971 207 224 119 0 chr9 50668424 50668491 -73407681 + L2a LINE L2 3293 3367 -59 3 971 279 133 0 0 chr9 50670007 50670052 -73406120 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 971 573 306 80 40 chr9 50670065 50670341 -73405831 - B4 SINE B4 -4 288 2 3 971 419 252 8 59 chr9 50671031 50671149 -73405023 - MER2 DNA MER2_type -67 278 167 3 971 430 263 64 99 chr9 50671150 50671433 -73404739 + B4 SINE B4 2 274 -18 3 971 950 71 8 0 chr9 50671502 50671628 -73404544 + B1_Mus1 SINE Alu 22 148 0 3 971 456 237 108 32 chr9 50671666 50671823 -73404349 - MER2 DNA MER2_type -164 181 13 3 971 411 236 121 8 chr9 50672171 50672295 -73403877 - MER58A DNA MER1_type -5 219 82 3 971 182 261 97 146 chr9 50672436 50672539 -73403633 - MIRm SINE MIR -13 263 166 3 971 1257 38 34 120 chr9 50672560 50672768 -73403404 - B2_Mm2 SINE B2 -4 191 2 3 971 335 322 76 32 chr9 50672978 50673228 -73402944 - L2 LINE L2 -468 2951 2691 3 971 278 211 13 78 chr9 50673783 50673860 -73402312 + RSINE1 SINE B4 61 132 -33 3 971 1693 203 48 46 chr9 50674049 50674442 -73401730 - MTC LTR MaLR 0 421 28 3 971 799 130 1 54 chr9 50675972 50676114 -73400058 - B1_Mus1 SINE Alu 0 148 16 3 971 925 150 0 0 chr9 50676260 50676400 -73399772 + B1_Mus2 SINE Alu 1 140 -7 3 971 597 222 109 38 chr9 50676428 50676611 -73399561 + B3 SINE B2 1 196 -20 3 971 182 167 77 77 chr9 50676747 50676760 -73399412 - MIR SINE MIR -7 255 243 3 971 426 340 26 11 chr9 50676760 50676901 -73399271 + B3A SINE B2 3 148 -50 3 971 549 0 0 0 chr9 50676901 50676962 -73399210 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 971 426 340 26 11 chr9 50676962 50677010 -73399162 + B3A SINE B2 149 194 -4 3 971 182 167 77 77 chr9 50677010 50677061 -73399111 - MIR SINE MIR -20 242 191 3 971 257 281 6 145 chr9 50677239 50677418 -73398754 - RSINE1 SINE B4 -8 157 4 3 971 512 30 0 15 chr9 50677656 50677723 -73398449 + (TTTTC)n Simple_repeat Simple_repeat 1 66 0 3 971 262 125 53 93 chr9 50677723 50677873 -73398299 + CT-rich Low_complexity Low_complexity 4 147 0 3 971 888 128 7 21 chr9 50677904 50678048 -73398124 - B1_Mur4 SINE Alu 0 150 9 3 971 385 234 45 122 chr9 50677909 50678065 -73398107 - B4A SINE B4 -68 224 81 3 971 6062 93 0 0 chr9 50679552 50680366 -73395806 - L1_Mm LINE L1 -287 5596 4783 3 971 429 20 0 0 chr9 50680370 50680420 -73395752 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 971 747 243 71 6 chr9 50680429 50680611 -73395561 - B3 SINE B2 -22 194 1 4 971 1146 62 14 0 chr9 50680898 50681043 -73395129 + B1_Mus2 SINE Alu 1 147 0 4 971 22 35 0 0 chr9 50682922 50682951 -73393221 + AT_rich Low_complexity Low_complexity 1 29 0 4 971 325 312 0 43 chr9 50683077 50683261 -73392911 + (CGTG)n Simple_repeat Simple_repeat 2 177 0 4 971 275 309 22 17 chr9 50683189 50683367 -73392805 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 971 607 230 27 60 chr9 50683372 50683557 -73392615 - B3A SINE B2 -17 181 3 4 971 1187 68 7 0 chr9 50684121 50684267 -73391905 + B1_Mus1 SINE Alu 2 148 0 4 971 279 0 0 0 chr9 50684696 50684727 -73391445 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 971 914 172 25 37 chr9 50684728 50684891 -73391281 - B2_Mm2 SINE B2 -34 161 1 4 971 396 0 0 0 chr9 50684964 50685008 -73391164 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 971 538 188 35 18 chr9 50687567 50687681 -73388491 + PB1D10 SINE Alu 2 117 0 4 971 652 104 183 46 chr9 50690217 50690348 -73385824 - B1_Mur2 SINE Alu 0 149 1 4 971 876 217 257 20 chr9 50694367 50694659 -73381513 - MTEb LTR MaLR -16 363 3 4 971 499 216 10 0 chr9 50696054 50696151 -73380021 + U6 snRNA snRNA 1 98 -9 4 971 916 148 7 0 chr9 50698493 50698635 -73377537 + B1_Mus2 SINE Alu 5 147 0 4 971 248 290 130 45 chr9 50699031 50699208 -73376964 + MIRb SINE MIR 43 234 -34 4 971 180 97 0 0 chr9 50703713 50703744 -73372428 + (TGG)n Simple_repeat Simple_repeat 3 33 0 4 971 364 274 25 42 chr9 50704149 50704267 -73371905 - PB1D10 SINE Alu 0 117 2 4 971 369 0 0 0 chr9 50705994 50706035 -73370137 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 971 1176 75 0 0 chr9 50709183 50709330 -73366842 - B1_Mus2 SINE Alu 0 147 1 4 971 868 178 112 11 chr9 50709676 50709863 -73366309 - MTD LTR MaLR -22 397 192 4 971 459 276 57 0 chr9 50709881 50710073 -73366099 + RMER12 LTR ERVK 770 972 -350 4 971 1014 218 16 0 chr9 50710062 50710255 -73365917 - MTD LTR MaLR -223 196 1 4 971 599 301 37 26 chr9 50710775 50710966 -73365206 + B3A SINE B2 4 196 -2 4 971 261 266 59 82 chr9 50711022 50711157 -73365015 + B1_Mus2 SINE Alu 1 132 -15 4 971 512 234 66 82 chr9 50711141 50711351 -73364821 + MLT1A LTR MaLR 193 390 0 4 971 855 41 205 0 chr9 50711664 50711786 -73364386 + B1_Mus2 SINE Alu 1 147 0 4 971 189 0 0 0 chr9 50711786 50711807 -73364365 + (A)n Simple_repeat Simple_repeat 1 21 0 4 971 357 304 81 6 chr9 50712070 50712242 -73363930 + L1ME4a LINE L1 5725 5909 -215 4 971 26 64 0 0 chr9 50712406 50712453 -73363719 + AT_rich Low_complexity Low_complexity 1 47 0 4 971 1628 181 6 33 chr9 50712634 50712965 -73363207 - Lx5 LINE L1 0 7050 6729 4 971 350 296 71 54 chr9 50716661 50716829 -73359343 + MIRb SINE MIR 50 220 -48 4 971 648 246 80 0 chr9 50716968 50717106 -73359066 - B1_Mur3 SINE Alu 0 149 1 4 971 249 157 71 0 chr9 50717621 50717691 -73358481 + CT-rich Low_complexity Low_complexity 2 76 0 4 971 295 318 28 9 chr9 50717696 50717804 -73358368 - PB1D10 SINE Alu -5 112 3 4 971 234 194 157 43 chr9 50717941 50718011 -73358161 + ID2 SINE ID 4 81 -2 4 971 381 302 140 30 chr9 50718185 50718349 -73357823 + MLT1B LTR MaLR 205 386 -4 4 971 1168 45 84 0 chr9 50718793 50718948 -73357224 - B2_Mm2 SINE B2 -26 169 2 4 971 243 0 0 0 chr9 50719925 50719952 -73356220 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 971 681 191 91 8 chr9 50720544 50720676 -73355496 + B1F2 SINE Alu 5 147 -2 4 971 212 284 95 60 chr9 50721784 50721900 -73354272 - L4 LINE RTE -914 1115 996 4 971 796 49 29 0 chr9 50722112 50722214 -73353958 + B1_Mus1 SINE Alu 30 134 -14 4 971 285 29 0 0 chr9 50722214 50722248 -73353924 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 971 572 209 64 0 chr9 50723192 50723302 -73352870 - PB1D9 SINE Alu -3 117 1 4 971 1336 81 11 26 chr9 50723957 50724148 -73352024 + B2_Mm1t SINE B2 1 188 -5 4 971 334 290 225 46 chr9 50724469 50724649 -73351523 - MIR SINE MIR -23 239 31 4 972 208 321 24 12 chr9 50726571 50726653 -73349519 + MIRb SINE MIR 122 204 -64 4 972 328 320 65 25 chr9 50726784 50726983 -73349189 + MIRb SINE MIR 12 218 -50 4 972 21 36 0 0 chr9 50728109 50728137 -73348035 + AT_rich Low_complexity Low_complexity 1 28 0 4 972 1022 274 16 4 chr9 50728508 50728765 -73347407 - MER2 DNA MER2_type 0 345 86 4 972 404 238 0 0 chr9 50728839 50728919 -73347253 - MER2 DNA MER2_type -265 80 1 4 972 902 211 13 27 chr9 50729095 50729319 -73346853 - Lx4B LINE L1 0 7058 6838 4 972 630 274 0 25 chr9 50729475 50729636 -73346536 - RSINE1 SINE B4 -6 159 3 4 972 364 211 45 9 chr9 50729646 50729756 -73346416 - L1MA7 LINE L1 -5 6286 6173 4 972 379 321 75 24 chr9 50729817 50730072 -73346100 - L1MC4a LINE L1 -862 7020 6753 4 972 227 256 149 11 chr9 50730982 50731069 -73345103 - MER5A1 DNA MER1_type -28 138 40 4 972 480 244 118 0 chr9 50731364 50731483 -73344689 + RSINE1 SINE B4 4 136 -29 4 972 1087 64 34 6 chr9 50731505 50732013 -73344159 + (CA)n Simple_repeat Simple_repeat 1 522 0 4 972 22 0 0 0 chr9 50732021 50732043 -73344129 + AT_rich Low_complexity Low_complexity 1 22 0 4 972 237 83 0 0 chr9 50732084 50732120 -73344052 + (T)n Simple_repeat Simple_repeat 1 36 0 4 972 21 57 0 0 chr9 50733080 50733115 -73343057 + AT_rich Low_complexity Low_complexity 1 35 0 4 972 6425 37 4 0 chr9 50733118 50733882 -73342290 - L1Md_F2 LINE L1 -12 6570 5804 4 972 438 287 59 65 chr9 50734018 50734204 -73341968 - MIR SINE MIR -5 257 73 4 972 510 295 15 23 chr9 50734477 50734609 -73341563 - B3A SINE B2 -1 197 67 4 972 1235 48 0 0 chr9 50734983 50735130 -73341042 + B1_Mus2 SINE Alu 1 147 0 4 972 1181 55 0 7 chr9 50735364 50735512 -73340660 - B1_Mus1 SINE Alu 0 148 2 4 972 1228 258 209 4 chr9 50735757 50736229 -73339943 + Lx8 LINE L1 6814 7381 -92 4 972 709 172 98 0 chr9 50736260 50736382 -73339790 + B1_Mur3 SINE Alu 5 138 -11 4 972 1277 98 16 26 chr9 50736483 50736672 -73339500 - B2_Mm2 SINE B2 -7 188 2 4 972 2433 228 252 99 chr9 50736751 50738165 -73338007 + RLTR22_Mur LTR ERVK 1 1631 -217 4 972 280 256 107 41 chr9 50738167 50738289 -73337883 + RLTR21 LTR ERVK 1288 1417 -155 4 972 361 222 0 69 chr9 50738418 50738505 -73337667 - ID4 SINE ID -1 82 2 4 972 5782 97 57 15 chr9 50738650 50739579 -73336593 - Lx LINE L1 0 6654 5687 4 972 2017 112 3 0 chr9 50739575 50739895 -73336277 - L1_Mur2 LINE L1 -1366 4511 4191 4 972 13388 84 34 8 chr9 50739898 50742685 -73333487 - L1VL2 LINE L1 -573 3042 178 4 972 711 126 39 0 chr9 50742699 50742802 -73333370 + B1_Mur1 SINE Alu 23 129 -20 4 972 846 51 36 7 chr9 50742804 50742942 -73333230 + (GA)n Simple_repeat Simple_repeat 1 142 0 4 972 418 280 73 29 chr9 50742982 50743118 -73333054 + B1F1 SINE Alu 1 142 -7 4 972 1828 150 125 27 chr9 50744437 50744813 -73331359 - MTC LTR MaLR -8 413 1 4 972 1218 84 39 11 chr9 50744884 50745065 -73331107 + B2_Mm2 SINE B2 1 186 -9 4 972 202 290 98 61 chr9 50745068 50745200 -73330972 - MIRc SINE MIR -32 236 100 4 972 1189 194 46 25 chr9 50745346 50745584 -73330588 - ORR1C2 LTR MaLR -1 383 141 4 972 2574 138 11 0 chr9 50745587 50746030 -73330142 - L1_Mur2 LINE L1 -1474 4403 3956 4 972 8317 109 11 5 chr9 50746059 50748247 -73327925 + L1_Mus4 LINE L1 4432 6636 0 4 972 811 144 14 21 chr9 50748281 50748423 -73327749 - ORR1C2 LTR MaLR -233 141 1 4 972 427 191 0 0 chr9 50749121 50749184 -73326988 - B1_Mus2 SINE Alu -70 77 15 4 972 230 167 131 16 chr9 50749450 50749511 -73326661 + ID2 SINE ID 6 73 -10 4 972 315 290 48 29 chr9 50749914 50750017 -73326155 + PB1D7 SINE Alu 6 110 -10 4 972 656 250 60 13 chr9 50750661 50750811 -73325361 - B3A SINE B2 -41 157 1 4 972 296 229 142 93 chr9 50750825 50751008 -73325164 - B3A SINE B2 -1 197 2 4 972 225 0 0 0 chr9 50751013 50751038 -73325134 + (T)n Simple_repeat Simple_repeat 1 25 0 4 972 233 238 95 0 chr9 50751406 50751469 -73324703 - B1F1 SINE Alu -54 95 27 4 972 2651 191 265 10 chr9 50752111 50752823 -73323349 + RMER1B Other Other 2 895 -171 4 972 4147 185 46 54 chr9 50752819 50753745 -73322427 + Lx7 LINE L1 6774 7692 -4 4 972 657 244 55 53 chr9 50753938 50754150 -73322022 - B3A SINE B2 0 198 6 4 972 816 204 7 7 chr9 50754749 50754892 -73321280 - B1_Mur1 SINE Alu -6 143 1 4 972 2438 133 8 10 chr9 50755626 50756021 -73320151 + ORR1B1 LTR MaLR 1 394 0 4 972 1154 68 0 0 chr9 50756966 50757113 -73319059 - B1_Mus1 SINE Alu -1 147 1 4 972 270 0 0 0 chr9 50757584 50757614 -73318558 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 972 23 54 0 0 chr9 50758394 50758431 -73317741 + AT_rich Low_complexity Low_complexity 1 37 0 4 972 1162 22 0 0 chr9 50758813 50758947 -73317225 + B1_Mus2 SINE Alu 1 134 -13 4 972 378 0 0 0 chr9 50758947 50758989 -73317183 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 4 972 3171 215 122 79 chr9 50759629 50760474 -73315698 + RMER19B LTR ERVK 3 883 -19 4 972 236 157 176 56 chr9 50761322 50761430 -73314742 - Lx8 LINE L1 -3 7470 7350 5 972 316 242 15 0 chr9 50762591 50762657 -73313515 - PB1D7 SINE Alu -21 99 33 5 972 248 290 43 0 chr9 50762842 50762911 -73313261 + ID4_ SINE ID 9 80 -3 5 972 445 330 166 6 chr9 50763066 50763386 -73312786 + L2 LINE L2 2437 2807 -612 5 972 1856 162 72 53 chr9 50763662 50764039 -73312133 - ORR1C2 LTR MaLR 0 384 1 5 972 1328 273 87 6 chr9 50764061 50764407 -73311765 + MTE2b LTR MaLR 1 374 -5 5 972 329 311 96 72 chr9 50764550 50764644 -73311528 - B3 SINE B2 -2 214 109 5 972 2616 141 68 50 chr9 50764644 50765161 -73311011 + RLTR11A2 LTR ERVK 2 527 0 5 972 329 311 96 72 chr9 50765161 50765185 -73310987 - B3 SINE B2 -108 108 2 5 972 450 191 45 0 chr9 50765185 50765274 -73310898 - RSINE1 SINE B4 -70 95 3 5 972 1644 183 207 44 chr9 50765354 50765812 -73310360 + MT2A LTR ERVL 1 533 0 5 972 650 327 51 46 chr9 50767304 50767432 -73308740 + L2a LINE L2 2617 2739 -680 5 972 1035 155 144 10 chr9 50767432 50767627 -73308545 + URR1B DNA MER1_type 5 225 0 5 972 650 311 79 70 chr9 50767627 50768184 -73307988 + L2a LINE L2 2740 3418 -8 5 972 613 200 44 7 chr9 50768585 50768721 -73307451 + B1_Mur1 SINE Alu 1 141 -8 5 972 301 276 74 28 chr9 50768871 50768979 -73307193 + PB1D7 SINE Alu 8 120 0 5 972 23 54 0 0 chr9 50769245 50769282 -73306890 + AT_rich Low_complexity Low_complexity 1 37 0 5 972 429 244 0 92 chr9 50769346 50769477 -73306695 - PB1D9 SINE Alu 0 120 2 5 972 555 43 0 0 chr9 50769817 50769887 -73306285 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 5 972 1157 44 0 0 chr9 50769887 50770023 -73306149 - B1_Mus2 SINE Alu -10 137 2 5 972 5194 55 0 58 chr9 50770084 50770844 -73305328 + L1Md_F2 LINE L1 4870 5585 -298 5 972 7903 50 3 8 chr9 50770845 50771836 -73304336 + L1Md_F2 LINE L1 5587 6572 -10 5 972 499 204 38 19 chr9 50771934 50772039 -73304133 + B1_Mur1 SINE Alu 22 128 -21 5 972 232 307 113 69 chr9 50772262 50772465 -73303707 - ORR1E LTR MaLR -144 215 4 5 972 529 289 8 32 chr9 50772504 50772629 -73303543 + ID_B1 SINE B4 87 208 -16 5 972 342 293 13 20 chr9 50772629 50772782 -73303390 + GA-rich Low_complexity Low_complexity 5 156 0 5 972 403 275 42 28 chr9 50773104 50773246 -73302926 + MLT1L LTR MaLR 419 562 -48 5 972 765 146 80 7 chr9 50773314 50773452 -73302720 + B1_Mur4 SINE Alu 3 150 0 5 972 312 120 0 0 chr9 50773463 50773513 -73302659 + (GGA)n Simple_repeat Simple_repeat 3 52 0 5 972 203 167 0 0 chr9 50773524 50773566 -73302606 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 5 972 515 120 75 11 chr9 50775818 50775911 -73300261 + MLT1A1 LTR MaLR 310 408 0 5 972 665 192 0 0 chr9 50776399 50776519 -73299653 + B1_Mus1 SINE Alu 29 148 0 5 972 238 246 0 17 chr9 50776519 50776577 -73299595 + GA-rich Low_complexity Low_complexity 3 59 0 5 972 276 338 51 1 chr9 50776721 50776840 -73299332 - L2c LINE L2 -40 3347 3210 5 972 328 342 84 17 chr9 50777094 50777213 -73298959 + B1F SINE Alu 23 149 0 5 972 4852 102 13 36 chr9 50778967 50779741 -73296431 + L1_Mus3 LINE L1 5883 6638 0 5 972 1521 201 76 6 chr9 50780326 50780667 -73295505 + ORR1D2 LTR MaLR 1 365 -5 5 972 607 356 39 35 chr9 50780657 50780916 -73295256 + B4A SINE B4 27 286 -6 5 972 295 314 0 38 chr9 50781726 50781832 -73294340 - RSINE1 SINE B4 -61 104 3 5 972 22 0 0 0 chr9 50782059 50782081 -73294091 + AT_rich Low_complexity Low_complexity 1 22 0 5 972 1083 255 83 30 chr9 50783477 50783816 -73292356 + MLT1A0 LTR MaLR 8 364 -1 5 972 21 82 0 0 chr9 50783874 50783923 -73292249 + AT_rich Low_complexity Low_complexity 1 49 0 5 972 1092 313 124 60 chr9 50784833 50785471 -73290701 + MER21B LTR ERV1 20 698 -165 5 972 434 294 36 30 chr9 50785769 50785937 -73290235 - MER57C2 LTR ERV1 0 434 266 5 972 1187 328 60 9 chr9 50786123 50786554 -73289618 + LTR31 LTR ERV1 152 604 -15 5 972 413 208 107 84 chr9 50786575 50786706 -73289466 - MER57C2 LTR ERV1 -274 160 27 5 972 295 250 0 32 chr9 50786920 50786982 -73289190 - RSINE1 SINE B4 -36 129 70 5 972 1006 183 23 56 chr9 50788762 50788815 -73287357 + B3 SINE B2 4 51 -165 5 972 1844 191 28 11 chr9 50788815 50789176 -73286996 + ORR1B2 LTR MaLR 1 367 0 5 972 1006 183 23 56 chr9 50789176 50789336 -73286836 + B3 SINE B2 52 210 -6 5 972 233 289 33 0 chr9 50789354 50789444 -73286728 + L1MEc LINE L1 127 219 -6181 5 972 1103 75 7 0 chr9 50789861 50790007 -73286165 - B1_Mus2 SINE Alu 0 147 1 5 972 410 361 68 15 chr9 50790396 50790601 -73285571 + HAL1 LINE L1 197 412 -2095 5 972 305 288 152 52 chr9 50790741 50791129 -73285043 + HAL1 LINE L1 579 1005 -1502 5 972 1319 81 27 0 chr9 50791178 50791337 -73284835 + B2_Mm2 SINE B2 2 161 -34 5 972 216 0 0 0 chr9 50791337 50791361 -73284811 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 5 972 1319 81 27 0 chr9 50791361 50791387 -73284785 + B2_Mm2 SINE B2 162 191 -4 5 972 350 313 106 103 chr9 50791435 50791612 -73284560 + HAL1 LINE L1 1154 1329 -1178 5 972 3352 47 45 0 chr9 50791612 50792036 -73284136 - L1Md_F2 LINE L1 0 6582 6140 5 972 3065 71 13 0 chr9 50792045 50792440 -73283732 - MTB LTR MaLR 0 400 1 5 972 350 313 106 103 chr9 50792440 50792544 -73283628 + HAL1 LINE L1 1330 1446 -1061 5 972 234 0 0 0 chr9 50793267 50793293 -73282879 + (T)n Simple_repeat Simple_repeat 1 26 0 5 972 233 270 32 63 chr9 50793369 50793464 -73282708 - MIRm SINE MIR -136 140 49 5 972 395 222 386 0 chr9 50795161 50795314 -73280858 + ID_B1 SINE B4 4 215 -9 5 972 696 294 76 42 chr9 50795326 50795564 -73280608 + B4A SINE B4 6 251 -41 5 972 305 0 50 0 chr9 50795846 50795886 -73280286 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 5 972 227 146 20 20 chr9 50796133 50796182 -73279990 + GA-rich Low_complexity Low_complexity 2 50 0 5 972 685 190 23 0 chr9 50796451 50796580 -73279592 - B1_Mur2 SINE Alu 0 149 6 5 972 497 282 70 13 chr9 50796580 50796609 -73279563 - ID_B1 SINE B4 -1 223 57 5 972 835 281 51 14 chr9 50796721 50797092 -73279080 - L1M5 LINE L1 -396 5768 5384 5 972 1809 106 57 45 chr9 50797801 50798137 -73278035 + Lx LINE L1 6315 6654 0 5 972 279 0 0 0 chr9 50798364 50798395 -73277777 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 972 652 24 24 0 chr9 50798400 50798483 -73277689 + B1_Mus2 SINE Alu 63 147 0 5 972 1711 16 0 0 chr9 50798532 50798724 -73277448 + B2_Mm1t SINE B2 2 193 0 5 972 321 309 144 20 chr9 50798729 50798924 -73277248 + HAL1 LINE L1 2270 2488 -19 5 972 1175 48 0 0 chr9 50799272 50799418 -73276754 + B1_Mus1 SINE Alu 2 147 -1 5 972 1092 22 64 14 chr9 50800250 50800390 -73275782 - B1_Mus2 SINE Alu 0 147 1 5 972 549 121 169 65 chr9 50800557 50800681 -73275491 + B1_Mus2 SINE Alu 1 137 -10 5 972 582 231 155 130 chr9 50801223 50801507 -73274665 + B4A SINE B4 2 292 0 5 972 1168 153 45 0 chr9 50801665 50801867 -73274305 - B3 SINE B2 -5 211 1 5 972 302 255 27 153 chr9 50801900 50802122 -73274050 + L2 LINE L2 2873 3066 -353 5 972 802 259 99 45 chr9 50802207 50802790 -73273382 + L1MEc LINE L1 836 1450 -4950 5 972 400 260 74 101 chr9 50802820 50803265 -73272907 + L1MEc LINE L1 1702 2134 -4266 5 972 330 186 14 0 chr9 50803235 50803305 -73272867 + L1M5 LINE L1 5679 5749 -415 5 972 634 223 53 13 chr9 50803949 50804099 -73272073 + MER5A1 DNA MER1_type 6 161 -5 5 972 22 35 0 0 chr9 50804241 50804270 -73271902 + AT_rich Low_complexity Low_complexity 1 29 0 5 972 901 190 196 0 chr9 50804270 50804449 -73271723 - B3 SINE B2 -2 214 1 5 972 621 335 13 71 chr9 50804678 50804987 -73271185 - B4 SINE B4 0 292 2 5 972 189 241 0 0 chr9 50805416 50805470 -73270702 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 5 972 1235 95 84 0 chr9 50805986 50806165 -73270007 - B2_Mm2 SINE B2 0 195 2 5 972 24 77 0 0 chr9 50806459 50806511 -73269661 + AT_rich Low_complexity Low_complexity 1 52 0 5 972 306 141 0 30 chr9 50807168 50807234 -73268938 - Lx7 LINE L1 -17 7679 7616 5 972 304 255 70 20 chr9 50808379 50808479 -73267693 - B3 SINE B2 -14 202 98 5 972 566 294 160 25 chr9 50808543 50808918 -73267254 - MLT1J1 LTR MaLR -5 443 5 5 972 267 367 10 48 chr9 50809316 50809419 -73266753 - L2c LINE L2 -29 3358 3260 5 972 288 314 53 10 chr9 50809794 50810000 -73266172 + L1M5 LINE L1 5395 5609 -515 5 972 1356 147 14 0 chr9 50810654 50810872 -73265300 + URR1A DNA MER1_type 6 226 0 5 972 351 259 108 37 chr9 50810905 50811174 -73264998 - L1M5 LINE L1 -425 5739 5452 5 972 517 319 14 48 chr9 50811951 50812096 -73264076 + RSINE1 SINE B4 17 156 -9 5 972 333 0 0 0 chr9 50812108 50812145 -73264027 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 972 234 0 0 0 chr9 50812145 50812170 -73264002 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 972 276 143 0 0 chr9 50813539 50813595 -73262577 + (A)n Simple_repeat Simple_repeat 1 56 0 5 972 623 240 8 0 chr9 50814133 50814254 -73261918 + RSINE1 SINE B4 2 123 -42 5 972 273 29 0 0 chr9 50814255 50814289 -73261883 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 972 746 89 211 0 chr9 50814474 50814597 -73261575 - B1_Mur4 SINE Alu 0 150 2 5 972 23 33 0 0 chr9 50817179 50817209 -73258963 + GC_rich Low_complexity Low_complexity 1 30 0 5 972 24 53 0 0 chr9 50817334 50817372 -73258800 + GC_rich Low_complexity Low_complexity 1 38 0 5 972 257 248 140 19 chr9 50817857 50817964 -73258208 - MIR3 SINE MIR -39 169 50 5 972 297 216 11 22 chr9 50818184 50818274 -73257898 + L1MC4 LINE L1 6944 7032 -1010 5 972 381 245 162 9 chr9 50818290 50818401 -73257771 - RSINE1 SINE B4 -35 130 3 5 972 449 207 276 0 chr9 50818433 50818549 -73257623 - B1_Mur1 SINE Alu 0 149 2 6 972 302 295 0 0 chr9 50818684 50818745 -73257427 - ID4 SINE ID -20 63 3 6 972 1040 279 130 53 chr9 50818781 50819359 -73256813 + L1MC4 LINE L1 7163 7769 -273 5 972 785 237 15 30 chr9 50819359 50819559 -73256613 - B3A SINE B2 0 198 2 6 972 1040 279 130 53 chr9 50819559 50819779 -73256393 + L1MC4 LINE L1 7770 8023 -19 5 972 21 0 0 0 chr9 50819818 50819839 -73256333 + AT_rich Low_complexity Low_complexity 1 21 0 6 972 186 43 0 0 chr9 50819839 50819862 -73256310 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 972 537 296 35 14 chr9 50819869 50820013 -73256159 - RSINE1 SINE B4 -15 150 4 6 972 705 103 0 0 chr9 50820028 50820145 -73256027 + (TC)n Simple_repeat Simple_repeat 2 118 0 6 972 341 268 14 0 chr9 50820152 50820223 -73255949 - ID4_ SINE ID -6 77 6 6 972 287 25 25 0 chr9 50820728 50820768 -73255404 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 972 232 373 59 11 chr9 50821069 50821088 -73255084 - B3A SINE B2 -1 197 2 6 972 611 273 12 42 chr9 50821088 50821256 -73254916 - RSINE1 SINE B4 0 165 3 6 972 863 151 20 27 chr9 50821279 50821429 -73254743 - B1_Mur4 SINE Alu 0 150 2 6 972 243 241 55 62 chr9 50822390 50822536 -73253636 - L1MA9 LINE L1 -2 6332 6188 6 972 304 327 55 10 chr9 50822584 50822785 -73253387 - L1MA9 LINE L1 -250 6062 5853 6 972 6649 50 1 2 chr9 50822784 50823644 -73252528 + L1_Mus1 LINE L1 5709 6567 0 6 972 407 52 0 0 chr9 50823750 50823808 -73252364 + L1_Mus2 LINE L1 6509 6566 0 6 972 198 103 0 0 chr9 50823812 50823841 -73252331 + (A)n Simple_repeat Simple_repeat 1 29 0 6 972 461 254 85 0 chr9 50823908 50824026 -73252146 - RSINE1 SINE B4 -33 132 5 6 972 885 270 97 15 chr9 50824031 50824462 -73251710 - L1MA9 LINE L1 -537 5763 5293 6 972 446 161 11 0 chr9 50824473 50824566 -73251606 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 972 211 304 118 11 chr9 50825295 50825388 -73250784 - L2c LINE L2 -4 3383 3281 6 972 837 166 35 0 chr9 50825540 50825685 -73250487 - B1_Mur4 SINE Alu 0 150 1 6 972 263 177 16 0 chr9 50825892 50825954 -73250218 + GA-rich Low_complexity Low_complexity 1 63 0 6 972 656 260 70 25 chr9 50829089 50829247 -73246925 + B3A SINE B2 19 183 -15 6 972 189 353 29 0 chr9 50829673 50829775 -73246397 - L2c LINE L2 -224 3163 3059 6 972 211 296 81 10 chr9 50829778 50829877 -73246295 - BC1_Mm scRNA scRNA -37 115 10 6 972 265 300 25 12 chr9 50829802 50829883 -73246289 - ID SINE ID -140 84 3 6 972 252 265 91 109 chr9 50829883 50829946 -73246226 + MT2B LTR ERVL 108 167 -434 6 972 724 103 159 0 chr9 50829946 50830072 -73246100 + B1_Mm SINE Alu 2 147 0 6 972 243 0 0 0 chr9 50830088 50830115 -73246057 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 972 684 328 91 20 chr9 50830391 50830486 -73245686 - MLT1A0 LTR MaLR -48 317 223 6 972 3257 40 2 17 chr9 50830486 50830888 -73245284 - MTA_Mm LTR MaLR 0 396 1 6 972 684 328 91 20 chr9 50830888 50831088 -73245084 - MLT1A0 LTR MaLR -143 222 1 6 972 270 0 0 0 chr9 50831236 50831266 -73244906 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 972 320 294 84 14 chr9 50831998 50832212 -73243960 + L1M5 LINE L1 4868 5096 -1050 6 972 231 250 139 0 chr9 50832231 50832303 -73243869 + ID4 SINE ID 2 83 0 6 972 1126 230 14 0 chr9 50832322 50832535 -73243637 + B3 SINE B2 1 216 0 6 972 248 338 0 0 chr9 50832556 50832627 -73243545 + ID4_ SINE ID 3 73 -10 6 972 1563 156 72 111 chr9 50832633 50832758 -73243414 - ORR1D1 LTR MaLR 0 374 244 6 972 306 73 0 0 chr9 50832758 50832799 -73243373 + (CAGG)n Simple_repeat Simple_repeat 4 44 0 6 972 1563 156 72 111 chr9 50832799 50832835 -73243337 - ORR1D1 LTR MaLR -131 243 201 6 972 702 200 7 33 chr9 50832835 50832985 -73243187 - B1_Mus1 SINE Alu 0 148 3 6 972 1724 156 72 111 chr9 50832985 50833211 -73242961 - ORR1D1 LTR MaLR -174 200 1 6 972 443 248 9 19 chr9 50833251 50833378 -73242794 + B1_Mur2 SINE Alu 10 133 -16 6 972 7411 55 6 22 chr9 50833378 50834354 -73241818 + L1_Mus2 LINE L1 5634 6566 0 6 972 587 312 31 6 chr9 50834666 50834827 -73241345 + ID_B1 SINE B4 1 165 -59 6 972 302 0 26 0 chr9 50834827 50834865 -73241307 + (CATA)n Simple_repeat Simple_repeat 3 41 0 6 972 344 351 75 8 chr9 50834866 50835119 -73241053 + L1M5 LINE L1 5389 5658 -582 6 972 751 282 5 15 chr9 50835172 50835370 -73240802 - B3A SINE B2 -2 196 1 6 972 313 353 68 26 chr9 50835701 50835893 -73240279 - MIR SINE MIR -51 211 12 6 972 414 0 0 0 chr9 50836455 50836501 -73239671 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 972 218 303 83 21 chr9 50837261 50837406 -73238766 + MIRb SINE MIR 40 193 -75 6 972 1023 310 83 28 chr9 50837548 50837910 -73238262 + Zaphod DNA Tip100 51 432 -3599 6 972 668 227 86 86 chr9 50838035 50838233 -73237939 - B3A SINE B2 0 198 1 6 972 930 291 104 17 chr9 50838265 50838621 -73237551 - MLT1B LTR MaLR -2 388 2 6 972 241 212 183 11 chr9 50838633 50838819 -73237353 + Zaphod DNA Tip100 638 855 -3176 6 972 260 163 33 44 chr9 50839117 50839207 -73236965 + Zaphod DNA Tip100 895 983 -3048 6 972 316 261 45 0 chr9 50839203 50839291 -73236881 + Zaphod DNA Tip100 3595 3686 -345 6 972 393 22 0 0 chr9 50839592 50839638 -73236534 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 972 272 27 27 0 chr9 50839638 50839674 -73236498 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 972 751 243 171 11 chr9 50839923 50840110 -73236062 - ID_B1 SINE B4 -7 217 1 6 972 198 0 0 0 chr9 50840658 50840680 -73235492 + (TA)n Simple_repeat Simple_repeat 1 22 0 6 972 353 286 28 19 chr9 50841539 50841646 -73234526 - MER20 DNA MER1_type -7 212 105 6 972 237 376 45 60 chr9 50841682 50841815 -73234357 + LTR16A1 LTR ERVL 114 244 -212 6 972 751 247 65 43 chr9 50841957 50842143 -73234029 + B3A SINE B2 6 195 -3 6 972 321 245 19 75 chr9 50842181 50842287 -73233885 + L1MC3 LINE L1 6751 6850 -935 6 972 652 221 0 79 chr9 50842510 50842662 -73233510 - B1_Mur1 SINE Alu -8 141 2 6 972 506 208 10 0 chr9 50842818 50842919 -73233253 - RSINE1 SINE B4 -62 103 2 6 972 233 98 24 0 chr9 50843690 50843731 -73232441 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 6 972 1791 212 74 13 chr9 50845183 50845574 -73230598 - MTD LTR MaLR 0 419 5 6 972 398 326 157 10 chr9 50845604 50845802 -73230370 - LTR33 LTR ERVL -266 249 23 6 972 1299 245 25 14 chr9 50845922 50846199 -73229973 + RCHARR1 DNA MER1_type 1 280 -694 6 972 445 280 48 0 chr9 50846197 50846322 -73229850 - RCHARR1 DNA MER1_type -305 669 539 6 972 748 216 124 18 chr9 50846323 50846549 -73229623 + RCHARR1 DNA MER1_type 274 523 -451 6 972 213 39 0 0 chr9 50846558 50846584 -73229588 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 972 1108 234 104 45 chr9 50846750 50846789 -73229383 + RCHARR1 DNA MER1_type 519 557 -417 6 972 1191 113 26 41 chr9 50846789 50846983 -73229189 - B2_Mm2 SINE B2 -4 191 1 6 972 1108 234 104 45 chr9 50846983 50847319 -73228853 + RCHARR1 DNA MER1_type 558 915 -59 6 972 271 319 71 43 chr9 50847447 50847588 -73228584 + L2a LINE L2 3282 3426 0 6 972 954 184 95 20 chr9 50847680 50847880 -73228292 - B3 SINE B2 0 216 2 6 972 220 361 38 25 chr9 50848068 50848227 -73227945 - L2b LINE L2 -221 3154 2994 6 972 251 302 65 57 chr9 50848629 50848752 -73227420 - MER65D LTR ERV1 -347 126 3 6 972 1148 64 50 0 chr9 50849960 50850100 -73226072 + B1_Mm SINE Alu 1 147 0 6 972 207 0 0 0 chr9 50850100 50850123 -73226049 + (A)n Simple_repeat Simple_repeat 1 23 0 6 972 243 0 0 0 chr9 50851043 50851070 -73225102 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 972 650 243 6 57 chr9 50851074 50851231 -73224941 - RSINE1 SINE B4 -15 150 2 6 972 426 96 0 0 chr9 50851506 50851579 -73224593 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 6 972 1029 269 55 17 chr9 50851966 50852257 -73223915 - MLT1C LTR MaLR 0 467 166 6 972 31 0 0 0 chr9 50852320 50852351 -73223821 + AT_rich Low_complexity Low_complexity 1 31 0 6 972 29924 79 39 36 chr9 50852373 50853921 -73222251 - L1_Mus2 LINE L1 0 6566 4992 6 972 573 15 0 0 chr9 50853921 50853987 -73222185 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 6 972 486 0 0 0 chr9 50853991 50854045 -73222127 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 6 972 3590 46 0 128 chr9 50854049 50854549 -73221623 - RLTR10C LTR ERVK 0 436 1 6 972 1242 57 6 0 chr9 50854549 50854708 -73221464 - B2_Mm1a SINE B2 -33 160 1 6 972 3111 49 71 0 chr9 50854710 50855076 -73221096 - MTA_Mm LTR MaLR 0 396 5 6 121 29924 112 9 52 chr9 50855076 50859456 -73216716 - L1_Mus2 LINE L1 -892 4991 675 6 973 28 71 0 0 chr9 50859538 50859594 -73216578 + AT_rich Low_complexity Low_complexity 1 56 0 6 973 622 271 82 23 chr9 50859633 50859852 -73216320 - Lx8 LINE L1 -84 7389 7158 6 973 333 68 0 0 chr9 50859937 50859981 -73216191 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 973 739 246 133 32 chr9 50859997 50860245 -73215927 - B4A SINE B4 -19 273 1 6 973 307 278 38 158 chr9 50860245 50860403 -73215769 - MIR SINE MIR -111 151 13 6 973 7880 53 17 4 chr9 50860570 50861553 -73214619 - L1Md_F2 LINE L1 0 6582 5587 6 973 4806 53 0 5 chr9 50861577 50862170 -73214002 + L1_Mm LINE L1 4974 5563 -320 6 973 419 302 240 35 chr9 50863109 50863654 -73212518 - L1MC4 LINE L1 -160 7882 7226 6 973 1682 32 0 0 chr9 50863735 50863920 -73212252 - B2_Mm1t SINE B2 -7 186 2 6 973 30 59 0 0 chr9 50864129 50864180 -73211992 + AT_rich Low_complexity Low_complexity 1 51 0 6 973 408 20 0 0 chr9 50864433 50864482 -73211690 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 6 973 341 300 25 0 chr9 50864527 50864647 -73211525 - L1MC4 LINE L1 -1461 6581 6459 6 973 234 0 0 0 chr9 50864808 50864834 -73211338 + (A)n Simple_repeat Simple_repeat 1 26 0 6 973 210 91 0 0 chr9 50866017 50866050 -73210122 + (CAAAC)n Simple_repeat Simple_repeat 4 36 0 6 973 519 271 138 0 chr9 50866075 50866285 -73209887 + Charlie4a DNA MER1_type 85 323 -185 6 973 276 288 99 12 chr9 50866390 50866471 -73209701 + ID_B1 SINE B4 6 93 -131 6 973 450 0 0 0 chr9 50866720 50866770 -73209402 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 6 973 654 13 0 0 chr9 50867696 50867771 -73208401 + (TC)n Simple_repeat Simple_repeat 2 76 0 7 973 270 81 0 0 chr9 50867771 50867807 -73208365 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 973 237 83 0 0 chr9 50868423 50868459 -73207713 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 7 973 385 344 151 34 chr9 50868848 50868937 -73207235 + MER77 LTR ERVL 282 390 -217 7 973 674 292 76 62 chr9 50868937 50869291 -73206881 - ORR1E LTR MaLR 0 359 1 7 973 385 344 151 34 chr9 50869291 50869466 -73206706 + MER77 LTR ERVL 391 577 -30 7 973 254 298 62 21 chr9 50869426 50869522 -73206650 + MER21B LTR ERV1 501 600 -263 7 973 402 57 0 0 chr9 50869594 50869647 -73206525 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 973 197 83 28 0 chr9 50870548 50870584 -73205588 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 973 927 284 73 15 chr9 50870598 50870870 -73205302 - B4A SINE B4 0 292 5 7 973 239 239 0 15 chr9 50871038 50871106 -73205066 + (ATG)n Simple_repeat Simple_repeat 2 68 0 7 973 7046 58 7 2 chr9 50871559 50872402 -73203770 + L1Md_F2 LINE L1 5735 6581 -1 7 973 279 0 0 0 chr9 50872431 50872462 -73203710 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 973 21 36 0 0 chr9 50872956 50872984 -73203188 + AT_rich Low_complexity Low_complexity 1 28 0 7 973 191 301 187 47 chr9 50873054 50873204 -73202968 - MIR SINE MIR -27 235 65 7 973 450 262 88 107 chr9 50873857 50874165 -73202007 - L1MC4 LINE L1 0 8042 7741 7 973 215 307 137 38 chr9 50874289 50874472 -73201700 - L2b LINE L2 -236 3139 2939 7 973 709 328 180 18 chr9 50874561 50874949 -73201223 + LTR33 LTR ERVL 54 504 -11 7 973 561 13 39 0 chr9 50877444 50877522 -73198650 + (GA)n Simple_repeat Simple_repeat 1 81 0 7 973 494 376 9 17 chr9 50877548 50877781 -73198391 + HERV16-int LTR ERVL 1738 1968 -3028 7 973 315 310 16 86 chr9 50877910 50878097 -73198075 - ID_B1 SINE B4 -1 223 50 7 973 265 276 0 0 chr9 50878451 50878509 -73197663 + HERV16-int LTR ERVL 2574 2631 -2365 7 973 418 359 88 13 chr9 50878653 50878879 -73197293 + HERV16-int LTR ERVL 2770 3012 -1984 7 973 366 317 14 20 chr9 50879006 50879225 -73196947 + HERV16-int LTR ERVL 3635 3867 -1890 7 973 284 280 98 43 chr9 50880154 50880318 -73195854 + HERV16-int LTR ERVL 4668 4840 -827 7 973 189 0 0 0 chr9 50880347 50880368 -73195804 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 973 1133 218 19 14 chr9 50880893 50881107 -73195065 - B3 SINE B2 0 216 2 7 973 396 0 0 0 chr9 50882252 50882296 -73193876 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 973 447 333 81 37 chr9 50882845 50883091 -73193081 - MIRb SINE MIR -8 260 4 7 973 204 282 85 96 chr9 50883284 50883378 -73192794 - L2c LINE L2 -9 3378 3286 7 973 230 224 0 0 chr9 50884326 50884384 -73191788 + C-rich Low_complexity Low_complexity 1 58 0 7 973 795 204 100 20 chr9 50886092 50886253 -73189919 + B3 SINE B2 1 167 -49 7 973 180 0 0 0 chr9 50886253 50886273 -73189899 + (CATA)n Simple_repeat Simple_repeat 4 23 0 7 973 795 204 100 20 chr9 50886273 50886311 -73189861 + B3 SINE B2 168 215 -1 7 973 262 352 114 0 chr9 50887320 50887425 -73188747 - MamRep605 Unknown Unknown -48 828 712 7 973 200 184 20 0 chr9 50887590 50887639 -73188533 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 973 889 251 15 161 chr9 50887639 50887981 -73188191 - B4A SINE B4 0 292 1 7 973 211 35 69 0 chr9 50888097 50888126 -73188046 - B2_Mm2 SINE B2 -131 64 34 7 973 2343 98 6 84 chr9 50888152 50888455 -73187717 + ORR1A2 LTR MaLR 1 285 -42 7 973 1294 103 43 16 chr9 50888455 50888643 -73187529 + B2_Mm2 SINE B2 1 193 -2 7 973 2343 98 6 84 chr9 50888643 50888694 -73187478 + ORR1A2 LTR MaLR 286 327 0 7 973 22 0 0 0 chr9 50890373 50890395 -73185777 + AT_rich Low_complexity Low_complexity 1 22 0 7 973 875 128 35 83 chr9 50890587 50890732 -73185440 + B1_Mus2 SINE Alu 4 141 -6 7 973 4136 62 18 2 chr9 50891982 50892482 -73183690 - Lx3_Mus LINE L1 0 7009 6502 7 973 6599 62 16 8 chr9 50892482 50893350 -73182822 + Lx3_Mus LINE L1 5040 5906 -1103 7 973 198 0 0 0 chr9 50893350 50893372 -73182800 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 7 973 6341 59 34 16 chr9 50893372 50893909 -73182263 + Lx3_Mus LINE L1 5907 6457 -552 7 973 279 292 102 30 chr9 50894456 50894622 -73181550 - MIR SINE MIR -1 261 84 7 973 329 291 65 84 chr9 50895079 50895233 -73180939 - MLT1C LTR MaLR -127 340 190 7 973 250 156 0 0 chr9 50895311 50895356 -73180816 - Lx8 LINE L1 -9 7464 7420 7 973 526 252 9 0 chr9 50895439 50895554 -73180618 - MLT1C LTR MaLR -303 164 49 7 973 482 271 83 23 chr9 50896018 50896150 -73180022 - B1_Mur1 SINE Alu -8 141 2 7 973 230 100 0 39 chr9 50897361 50897413 -73178759 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 7 973 1278 41 0 26 chr9 50897417 50897568 -73178604 - B1_Mus2 SINE Alu 0 147 1 7 973 188 272 39 115 chr9 50897733 50897837 -73178335 - MIRb SINE MIR -162 106 11 7 973 414 178 0 89 chr9 50897877 50898210 -73177962 + GA-rich Low_complexity Low_complexity 1 303 0 7 973 182 302 57 0 chr9 50898319 50898372 -73177800 - L3b LINE CR1 -31 451 396 7 973 182 302 57 0 chr9 50898456 50898509 -73177663 - L3b LINE CR1 -31 451 396 7 973 511 229 38 9 chr9 50899609 50899715 -73176457 + PB1D7 SINE Alu 1 109 -11 7 973 333 123 0 0 chr9 50899741 50899806 -73176366 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 973 237 33 0 0 chr9 50899864 50899894 -73176278 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 973 231 291 8 113 chr9 50899894 50900018 -73176154 + MIRm SINE MIR 152 262 -14 7 973 1090 298 100 68 chr9 50900553 50901083 -73175089 + MER82 DNA MER2_type 7 553 -100 7 973 1531 54 11 5 chr9 50901443 50901630 -73174542 - B2_Mm2 SINE B2 -5 190 3 7 973 383 294 106 50 chr9 50903566 50903745 -73172427 - MIRb SINE MIR -44 224 36 7 973 581 189 112 24 chr9 50904083 50904208 -73171964 - B1_Mur2 SINE Alu -11 138 3 7 973 267 268 12 47 chr9 50904216 50904302 -73171870 - PB1D10 SINE Alu 0 117 35 7 973 221 313 14 56 chr9 50904697 50904768 -73171404 - B1_Mus2 SINE Alu -79 68 1 7 973 360 291 48 10 chr9 50905148 50905252 -73170920 - B1F SINE Alu -41 108 1 7 973 430 366 6 47 chr9 50905165 50905259 -73170913 - ID_B1 SINE B4 -58 166 75 7 973 426 20 0 0 chr9 50905259 50905310 -73170862 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 973 297 0 0 0 chr9 50905310 50905343 -73170829 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 7 973 430 366 6 47 chr9 50905343 50905419 -73170753 - ID SINE ID -150 74 3 7 973 692 241 0 65 chr9 50905456 50905625 -73170547 + RSINE1 SINE B4 7 164 -1 7 973 477 339 57 16 chr9 50905671 50905951 -73170221 + B4A SINE B4 8 282 -10 7 973 1082 116 0 11 chr9 50906593 50906768 -73169404 + (TTTTC)n Simple_repeat Simple_repeat 3 175 0 7 973 258 218 36 0 chr9 50906786 50906841 -73169331 - ID4 SINE ID -25 58 2 7 973 546 79 0 0 chr9 50907002 50907078 -73169094 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 973 360 0 0 0 chr9 50907078 50907117 -73169055 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 973 374 280 205 25 chr9 50907145 50907306 -73168866 - B4A SINE B4 -14 278 89 7 973 357 288 12 0 chr9 50907312 50907475 -73168697 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 7 973 510 61 0 0 chr9 50907478 50907544 -73168628 + (TTTTC)n Simple_repeat Simple_repeat 2 67 0 7 973 223 254 26 66 chr9 50907548 50907624 -73168548 - B4 SINE B4 -216 76 4 7 973 441 0 0 0 chr9 50907710 50907759 -73168413 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 973 646 303 35 0 chr9 50907765 50907910 -73168262 - B3A SINE B2 -48 150 1 7 973 1578 43 32 0 chr9 50909483 50909671 -73166501 - B2_Mm2 SINE B2 0 195 2 7 973 189 0 0 0 chr9 50911406 50911427 -73164745 + (T)n Simple_repeat Simple_repeat 1 21 0 7 973 304 225 75 0 chr9 50914399 50914479 -73161693 - PB1D10 SINE Alu -1 116 31 7 973 34 79 0 0 chr9 50915110 50915186 -73160986 + AT_rich Low_complexity Low_complexity 1 76 0 7 973 849 211 0 14 chr9 50917095 50917239 -73158933 + B1_Mur1 SINE Alu 1 142 -7 7 973 648 210 86 0 chr9 50917372 50917534 -73158638 + L1MA4 LINE L1 5727 5902 -398 7 973 21 57 0 0 chr9 50917683 50917718 -73158454 + AT_rich Low_complexity Low_complexity 1 35 0 7 973 288 0 0 0 chr9 50917785 50917817 -73158355 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 973 624 257 59 26 chr9 50917819 50917971 -73158201 - B3A SINE B2 -29 169 13 7 973 493 275 37 22 chr9 50918461 50918595 -73157577 + B1F2 SINE Alu 13 148 -1 7 973 247 316 69 124 chr9 50918680 50918713 -73157459 - B2_Mm2 SINE B2 -4 191 1 7 973 593 295 12 42 chr9 50918713 50918882 -73157290 - RSINE1 SINE B4 0 165 1 7 973 189 364 62 18 chr9 50919061 50919173 -73156999 + L2c LINE L2 3249 3365 -22 7 973 202 224 0 0 chr9 50919641 50919690 -73156482 + T-rich Low_complexity Low_complexity 1 49 0 7 973 1700 35 0 10 chr9 50919717 50919919 -73156253 - L1Md_F2 LINE L1 -12 6570 6371 7 973 292 357 64 45 chr9 50921088 50921308 -73154864 - LTR16A LTR ERVL -96 355 132 7 973 195 42 0 0 chr9 50921384 50921408 -73154764 + (T)n Simple_repeat Simple_repeat 1 24 0 7 973 180 0 0 0 chr9 50921635 50921655 -73154517 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 7 973 1204 56 0 0 chr9 50921666 50921808 -73154364 - B1_Mus2 SINE Alu -1 146 5 7 973 188 354 51 0 chr9 50921812 50921891 -73154281 + L3 LINE CR1 3584 3666 -823 7 973 232 280 0 0 chr9 50921924 50921974 -73154198 + ID4_ SINE ID 7 56 -27 7 973 491 307 117 5 chr9 50922211 50922417 -73153755 - MIR SINE MIR 0 262 34 7 973 702 73 27 0 chr9 50922616 50922726 -73153446 + (TC)n Simple_repeat Simple_repeat 1 113 0 7 973 302 260 53 30 chr9 50922727 50922849 -73153323 - B1F2 SINE Alu -2 125 5 7 973 243 364 42 0 chr9 50922964 50923107 -73153065 + L3 LINE CR1 3841 3989 -500 7 973 348 43 0 0 chr9 50923442 50923488 -73152684 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 973 234 352 18 62 chr9 50923508 50923620 -73152552 - MER5A DNA MER1_type -28 161 55 7 973 288 319 8 17 chr9 50926429 50926547 -73149625 - PB1D10 SINE Alu 0 117 1 8 973 236 319 32 11 chr9 50926634 50926729 -73149443 - PB1D10 SINE Alu -2 115 19 8 973 930 226 18 63 chr9 50926779 50927001 -73149171 + B3 SINE B2 1 212 -4 8 973 1261 54 0 20 chr9 50928173 50928323 -73147849 + B1_Mus2 SINE Alu 1 147 0 8 973 611 267 13 13 chr9 50928356 50928508 -73147664 + RSINE1 SINE B4 12 163 -2 8 973 761 260 130 4 chr9 50928578 50928825 -73147347 - B4A SINE B4 -14 278 1 8 973 366 138 31 0 chr9 50928863 50928928 -73147244 - B3 SINE B2 -15 201 135 8 973 306 305 94 31 chr9 50929262 50929421 -73146751 + RMER15 LTR ERVL 405 573 -2 8 973 524 162 204 18 chr9 50929421 50929533 -73146639 - B3 SINE B2 -78 138 6 8 973 261 0 0 0 chr9 50929566 50929595 -73146577 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 973 216 0 0 0 chr9 50930041 50930065 -73146107 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 8 973 923 186 245 10 chr9 50930073 50930367 -73145805 - ORR1D1 LTR MaLR -11 363 1 8 973 1094 222 109 29 chr9 50930953 50931264 -73144908 - MTD LTR MaLR -16 403 68 8 973 14644 73 19 9 chr9 50931360 50933273 -73142899 - L1VL2 LINE L1 -626 2989 1054 8 973 5773 71 4 4 chr9 50933273 50933994 -73142178 - L1_Mus3 LINE L1 -9 6629 5909 8 973 14644 90 14 3 chr9 50933994 50934972 -73141200 - L1VL2 LINE L1 -2562 1053 65 8 973 421 218 0 0 chr9 50934974 50935052 -73141120 - MTD LTR MaLR -339 80 3 8 973 239 311 151 13 chr9 50935168 50935393 -73140779 - L1MDa LINE L1 -4799 1834 1579 8 973 343 347 72 24 chr9 50935524 50935775 -73140397 - L1MDa LINE L1 -6232 401 139 8 973 387 0 0 0 chr9 50935789 50935832 -73140340 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 973 445 331 92 0 chr9 50935999 50936183 -73139989 - B4A SINE B4 -6 286 86 8 973 487 279 84 24 chr9 50936243 50936415 -73139757 - B4A SINE B4 -116 176 4 8 973 896 255 50 82 chr9 50936496 50936838 -73139334 + ORR1E LTR MaLR 12 342 -17 8 973 325 362 0 9 chr9 50937434 50937540 -73138632 + PB1D10 SINE Alu 1 105 -12 8 973 284 277 15 0 chr9 50937568 50937633 -73138539 + ID4 SINE ID 15 80 -3 8 973 1059 166 190 4 chr9 50937753 50937880 -73138292 - ORR1D1 LTR MaLR 0 374 230 8 973 198 0 0 0 chr9 50937880 50937902 -73138270 + (CAGG)n Simple_repeat Simple_repeat 1 22 0 8 973 1059 166 190 4 chr9 50937902 50938016 -73138156 - ORR1D1 LTR MaLR -145 229 89 8 973 2050 138 88 58 chr9 50938019 50938418 -73137754 - MTC LTR MaLR -10 411 1 8 973 540 108 32 11 chr9 50938418 50938508 -73137664 - ORR1D1 LTR MaLR -282 92 1 8 973 4183 43 4 6 chr9 50938700 50939188 -73136984 + L1Md_F2 LINE L1 6092 6578 -4 8 973 293 195 0 181 chr9 50939219 50939313 -73136859 - PB1D10 SINE Alu 0 149 52 8 973 234 283 228 22 chr9 50939650 50939713 -73136459 - Helitron3Na_Mam RC Helitron -160 326 166 8 973 238 367 40 10 chr9 50939713 50939812 -73136360 - LTR86B2 LTR ERVL -169 318 217 8 973 234 283 228 22 chr9 50939812 50939834 -73136338 - Helitron3Na_Mam RC Helitron -160 165 105 8 973 644 82 227 0 chr9 50939928 50940038 -73136134 - B1_Mm SINE Alu 0 147 13 8 973 357 263 61 101 chr9 50939953 50940101 -73136071 - MT2B LTR ERVL -337 264 123 8 973 189 0 0 129 chr9 50940532 50940602 -73135570 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 8 973 497 244 48 24 chr9 50940725 50940851 -73135321 + Lx8 LINE L1 7167 7295 -178 8 973 24 0 0 0 chr9 50941026 50941050 -73135122 + AT_rich Low_complexity Low_complexity 1 24 0 8 973 1754 224 19 0 chr9 50941199 50941521 -73134651 + Lx5 LINE L1 6648 6975 -75 8 973 213 357 0 0 chr9 50942028 50942084 -73134088 + MIRb SINE MIR 199 254 -14 8 973 185 333 0 60 chr9 50942198 50942265 -73133907 - L2b LINE L2 -73 3302 3240 8 973 495 288 51 42 chr9 50943017 50943231 -73132941 - MER20 DNA MER1_type -3 216 1 8 973 932 282 139 48 chr9 50943294 50943768 -73132404 - L2b LINE L2 -468 2951 2435 8 973 285 341 56 20 chr9 50943812 50944063 -73132109 - L2b LINE L2 -1141 2278 2019 8 973 855 247 133 4 chr9 50945404 50945668 -73130504 + MTD-int LTR MaLR 957 1254 -4 8 973 765 289 157 14 chr9 50945675 50946008 -73130164 + MTD LTR MaLR 6 409 -12 8 973 961 131 130 6 chr9 50947598 50947759 -73128413 - B2_Mm2 SINE B2 -14 181 1 8 973 513 0 0 0 chr9 50947794 50947851 -73128321 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 973 426 20 0 0 chr9 50947851 50947901 -73128271 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 973 417 245 141 10 chr9 50947906 50948005 -73128167 - RSINE1 SINE B4 -51 114 3 8 973 231 346 37 59 chr9 50948483 50948618 -73127554 + MIRb SINE MIR 97 228 -40 8 973 389 364 51 10 chr9 50949624 50949821 -73126351 + MIR SINE MIR 29 233 -29 8 973 209 339 15 0 chr9 50950426 50950491 -73125681 + MIR SINE MIR 189 254 -8 8 973 225 305 179 0 chr9 50950789 50950884 -73125288 + MIR SINE MIR 117 228 -34 8 973 562 227 20 34 chr9 50951455 50951601 -73124571 + B1F SINE Alu 1 144 -5 8 973 416 208 14 0 chr9 50951627 50951699 -73124473 + ID4_ SINE ID 4 76 -7 8 973 1190 276 108 44 chr9 50951770 50952296 -73123876 + MLT1F2 LTR MaLR 1 560 0 8 973 1479 169 171 9 chr9 50953725 50954047 -73122125 + ORR1D1 LTR MaLR 1 374 0 8 973 258 340 21 0 chr9 50954756 50954853 -73121319 + L2 LINE L2 2712 2810 -609 8 973 188 286 57 0 chr9 50955455 50955525 -73120647 + MIRm SINE MIR 203 276 0 8 973 205 266 109 50 chr9 50956413 50956532 -73119640 - MIRc SINE MIR -52 216 91 8 973 884 173 0 6 chr9 50958413 50958593 -73117579 + CT-rich Low_complexity Low_complexity 2 180 0 8 973 738 127 37 15 chr9 50958602 50958738 -73117434 - B1_Mur4 SINE Alu 0 150 12 8 973 21 0 0 0 chr9 50959308 50959329 -73116843 + AT_rich Low_complexity Low_complexity 1 21 0 8 973 233 214 18 18 chr9 50960391 50960448 -73115724 + G-rich Low_complexity Low_complexity 3 59 0 8 973 234 315 27 0 chr9 50960800 50960873 -73115299 - ID4 SINE ID -8 75 1 8 973 582 117 0 0 chr9 50960970 50961081 -73115091 + (TCCC)n Simple_repeat Simple_repeat 4 114 0 8 973 227 255 59 0 chr9 50962173 50962224 -73113948 + L2a LINE L2 3354 3407 -19 8 973 1215 283 12 34 chr9 50962935 50963195 -73112977 - MER2 DNA MER2_type -2 343 84 8 973 315 0 0 0 chr9 50963195 50963230 -73112942 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 973 1215 283 12 34 chr9 50963230 50963247 -73112925 - MER2 DNA MER2_type -262 83 73 8 973 1207 242 25 14 chr9 50963247 50963528 -73112644 - B4A SINE B4 -8 284 1 8 973 1215 283 12 34 chr9 50963528 50963571 -73112601 - MER2 DNA MER2_type -273 72 30 8 973 3113 162 24 29 chr9 50966571 50967151 -73109021 + RLTR20B3 LTR ERVK 1 577 0 8 973 297 184 286 0 chr9 50967709 50967807 -73108365 + MER53 DNA hAT 39 164 -29 8 973 195 259 36 18 chr9 50969006 50969061 -73107111 - MIR3 SINE MIR -37 171 116 8 973 363 154 0 0 chr9 50969455 50969520 -73106652 + GA-rich Low_complexity Low_complexity 2 66 0 8 973 519 17 0 0 chr9 50970127 50970187 -73105985 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 973 876 123 7 46 chr9 50970443 50970596 -73105576 - B1_Mus1 SINE Alu -1 147 1 8 973 416 315 154 30 chr9 50970880 50971211 -73104961 - L1MC3 LINE L1 -243 7542 7171 8 973 278 266 32 83 chr9 50971206 50971240 -73104932 - L1MC3 LINE L1 -1088 6873 6842 8 973 324 0 0 0 chr9 50971240 50971276 -73104896 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 973 418 233 32 48 chr9 50971276 50971440 -73104732 - L1MC3 LINE L1 -932 6853 6702 8 973 737 366 87 32 chr9 50972846 50973258 -73102914 + MLT1H1 LTR MaLR 80 514 -41 8 973 289 325 0 0 chr9 50975536 50975616 -73100556 + GA-rich Low_complexity Low_complexity 5 84 0 8 973 258 348 11 0 chr9 50977797 50977886 -73098286 + MIR3 SINE MIR 89 178 -30 8 973 188 261 45 30 chr9 50978465 50978532 -73097640 + L2b LINE L2 3307 3374 -1 8 973 406 358 47 10 chr9 50979132 50979324 -73096848 + MIR SINE MIR 29 227 -35 8 973 550 350 33 44 chr9 50979786 50980058 -73096114 + B4A SINE B4 2 270 -22 8 973 549 30 0 0 chr9 50980058 50980125 -73096047 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 973 300 292 28 19 chr9 50980180 50980288 -73095884 + MIRb SINE MIR 34 142 -126 8 973 1160 225 133 21 chr9 50980345 50980676 -73095496 + ORR1D2 LTR MaLR 3 370 0 8 973 878 229 53 14 chr9 50980731 50980939 -73095233 - B3 SINE B2 0 216 1 8 973 268 254 181 17 chr9 50981640 50981756 -73094416 + LTR41 LTR ERVL 1 135 -633 8 973 280 222 134 36 chr9 50981775 50981887 -73094285 + L1MB4 LINE L1 6031 6153 -27 8 973 447 264 36 9 chr9 50981930 50982041 -73094131 + B4A SINE B4 28 141 -151 8 973 387 0 0 0 chr9 50982601 50982644 -73093528 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 973 855 80 0 0 chr9 50983474 50983599 -73092573 + (TG)n Simple_repeat Simple_repeat 1 125 0 8 973 736 316 5 14 chr9 50984364 50984573 -73091599 - ID_B1 SINE B4 -15 209 3 8 973 911 269 57 13 chr9 50984986 50985284 -73090888 - Tigger7 DNA MER2_type -7 2484 2174 8 973 477 272 132 6 chr9 50985314 50985473 -73090699 - Tigger7 DNA MER2_type -2185 306 128 8 973 261 290 151 0 chr9 50986312 50986405 -73089767 - PB1D10 SINE Alu -10 107 1 8 973 482 222 37 60 chr9 50986811 50986945 -73089227 + MLT1A1 LTR MaLR 1 131 -277 8 974 434 306 117 98 chr9 50987377 50987736 -73088436 - ORR1E LTR MaLR 0 374 9 8 974 1152 264 32 95 chr9 50989702 50990103 -73086069 + MLT1B LTR MaLR 3 378 -12 8 974 252 0 0 0 chr9 50990106 50990134 -73086038 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 8 974 186 293 0 0 chr9 50990540 50990581 -73085591 + L2c LINE L2 3286 3326 -61 8 974 198 103 0 0 chr9 50992530 50992559 -73083613 + (GGAGA)n Simple_repeat Simple_repeat 4 32 0 8 974 213 203 0 33 chr9 50992580 50992641 -73083531 + (CAGAGA)n Simple_repeat Simple_repeat 3 61 0 8 974 515 181 0 21 chr9 50993938 50994034 -73082138 - ID_B1 SINE B4 -3 221 128 8 974 450 0 0 0 chr9 50994159 50994209 -73081963 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 974 403 271 64 38 chr9 50994856 50995013 -73081159 - MER5A1 DNA MER1_type -5 161 1 8 974 262 311 0 0 chr9 50995252 50995326 -73080846 + L4 LINE RTE 1774 1847 -182 8 974 315 273 172 0 chr9 50995485 50995584 -73080588 + MIR SINE MIR 147 262 0 9 974 6085 38 13 1 chr9 50996261 50997027 -73079145 + L1Md_F2 LINE L1 5783 6557 -25 9 974 271 0 25 25 chr9 50997030 50997070 -73079102 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 9 974 317 265 0 0 chr9 50997222 50997290 -73078882 + MER5A1 DNA MER1_type 92 159 -7 9 974 292 354 49 0 chr9 50997408 50997552 -73078620 - L2a LINE L2 -344 3082 2932 9 974 273 365 48 6 chr9 50997635 50997803 -73078369 - L2a LINE L2 -648 2771 2597 9 974 379 243 85 27 chr9 50997860 50997989 -73078183 - PB1D9 SINE Alu -2 148 13 9 974 228 335 98 55 chr9 50998019 50998038 -73078134 - B3A SINE B2 -7 191 1 9 974 805 281 0 0 chr9 50998038 50998202 -73077970 - RSINE1 SINE B4 0 165 2 9 974 490 278 80 74 chr9 50998689 50998852 -73077320 + B4 SINE B4 2 165 -127 9 974 270 250 30 6 chr9 50998797 50998873 -73077299 + B1F2 SINE Alu 26 100 -20 9 974 1705 210 93 70 chr9 50998873 50999389 -73076783 - RLTR11A LTR ERVK 0 528 1 9 974 416 337 58 0 chr9 51000258 51000430 -73075742 + MIR SINE MIR 7 188 -74 1 974 220 314 38 0 chr9 51001675 51001780 -73074392 - MIRb SINE MIR -58 210 102 2 974 366 309 31 0 chr9 51001836 51001933 -73074239 - B1F2 SINE Alu -47 102 3 3 974 1811 157 30 3 chr9 51002453 51002754 -73073418 - RLTR27 LTR ERVK 0 309 1 4 974 571 228 44 66 chr9 51002889 51003072 -73073100 - MTEa LTR MaLR 0 379 201 5 974 470 196 14 14 chr9 51003057 51003213 -73072959 - MTEb LTR MaLR -89 290 164 6 974 389 241 0 24 chr9 51003374 51003459 -73072713 - MTEb LTR MaLR -201 178 96 6 974 260 250 122 2 chr9 51003714 51003826 -73072346 + MIRc SINE MIR 53 181 -95 7 974 198 0 0 0 chr9 51004379 51004401 -73071771 + (T)n Simple_repeat Simple_repeat 1 22 0 8 974 325 244 35 0 chr9 51004786 51004872 -73071300 - L2a LINE L2 0 3426 3338 9 974 245 289 16 0 chr9 51005295 51005367 -73070805 - B4A SINE B4 -218 74 2 1 974 1035 171 74 23 chr9 51005523 51005738 -73070434 - RMER12 LTR ERVK -1096 226 1 1 974 319 304 113 43 chr9 51005765 51005906 -73070266 + MER5A DNA MER1_type 7 157 -32 1 974 358 343 51 17 chr9 51006434 51006609 -73069563 - B4A SINE B4 -3 289 109 1 974 261 0 0 0 chr9 51006639 51006668 -73069504 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 974 742 255 0 0 chr9 51007681 51007826 -73068346 + RSINE1 SINE B4 1 145 -20 1 974 339 85 0 0 chr9 51007827 51007874 -73068298 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 974 840 278 23 9 chr9 51009020 51009234 -73066938 - ID_B1 SINE B4 0 224 8 1 974 270 81 0 0 chr9 51009250 51009287 -73066885 + (T)n Simple_repeat Simple_repeat 1 37 0 1 974 498 151 0 28 chr9 51009903 51010012 -73066160 + GA-rich Low_complexity Low_complexity 4 109 0 1 974 198 352 68 12 chr9 51010478 51010639 -73065533 - MIR SINE MIR -82 180 11 2 974 518 342 107 7 chr9 51010950 51011250 -73064922 - MER2B DNA MER2_type -3 333 4 2 974 254 308 46 18 chr9 51012044 51012153 -73064019 + MER5A DNA MER1_type 2 113 -76 2 974 233 276 0 0 chr9 51012767 51012825 -73063347 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 2 974 204 337 126 21 chr9 51012888 51013079 -73063093 + MIRb SINE MIR 36 246 -22 2 974 423 98 0 0 chr9 51013748 51013809 -73062363 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 2 974 917 326 90 57 chr9 51014488 51014606 -73061566 - Lx7 LINE L1 -2 7471 7341 2 974 315 0 0 0 chr9 51014606 51014641 -73061531 + (CCA)n Simple_repeat Simple_repeat 3 37 0 2 974 1596 298 66 21 chr9 51014641 51015070 -73061102 - Lx7 LINE L1 -133 7340 6898 2 974 1580 207 151 84 chr9 51015070 51015124 -73061048 - MT2A LTR ERVL 0 533 468 2 974 414 0 0 0 chr9 51015124 51015170 -73061002 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 974 1580 207 151 84 chr9 51015170 51015612 -73060560 - MT2A LTR ERVL -66 467 4 2 974 1596 297 65 21 chr9 51015612 51015805 -73060367 - Lx7 LINE L1 -562 6911 6699 2 974 832 263 19 51 chr9 51015836 51016052 -73060120 - B3 SINE B2 -6 210 2 3 974 188 370 0 0 chr9 51016083 51016137 -73060035 + L2c LINE L2 3296 3349 -38 3 974 287 323 42 88 chr9 51017964 51018342 -73057830 - L1M5 LINE L1 -2083 4063 3689 3 974 22 0 0 0 chr9 51019141 51019163 -73057009 + AT_rich Low_complexity Low_complexity 1 22 0 3 974 1189 48 0 14 chr9 51020445 51020592 -73055580 + B1_Mus2 SINE Alu 3 147 0 3 974 351 0 0 0 chr9 51022357 51022396 -73053776 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 974 2578 94 235 36 chr9 51024010 51024483 -73051689 - RMER2 LTR ERV1 0 567 1 3 974 1195 35 7 0 chr9 51024809 51024951 -73051221 + B1_Mus2 SINE Alu 5 147 0 3 974 201 154 0 0 chr9 51024951 51024990 -73051182 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 974 186 71 0 0 chr9 51025222 51025250 -73050922 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 974 462 328 137 0 chr9 51025731 51025914 -73050258 + MER58A DNA MER1_type 16 223 -1 4 974 251 301 41 0 chr9 51027088 51027161 -73049011 - Lx8 LINE L1 -313 7160 7085 4 974 1267 20 7 0 chr9 51027236 51027383 -73048789 - B1_Mus1 SINE Alu 0 148 1 4 974 456 221 0 0 chr9 51028115 51028228 -73047944 + (TA)n Simple_repeat Simple_repeat 1 113 0 4 974 286 281 22 22 chr9 51028281 51028372 -73047800 - MER5B DNA MER1_type -6 172 82 4 974 267 31 0 0 chr9 51029236 51029268 -73046904 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 4 974 21 0 0 0 chr9 51030485 51030506 -73045666 + AT_rich Low_complexity Low_complexity 1 21 0 4 974 948 146 33 11 chr9 51030890 51031070 -73045102 - URR1A DNA MER1_type -6 220 37 4 974 483 324 137 0 chr9 51032718 51032937 -73043235 - MIRb SINE MIR -16 252 4 4 974 644 283 124 68 chr9 51033099 51033328 -73042844 + B4A SINE B4 9 256 -36 4 974 360 0 0 0 chr9 51033328 51033368 -73042804 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 974 644 283 124 68 chr9 51033368 51033403 -73042769 + B4A SINE B4 257 288 -4 4 974 186 287 123 26 chr9 51034320 51034488 -73041684 + MIRc SINE MIR 3 181 -27 5 974 201 74 0 0 chr9 51035650 51035677 -73040495 + (GGA)n Simple_repeat Simple_repeat 3 29 0 5 974 986 148 6 0 chr9 51035677 51035853 -73040319 + GA-rich Low_complexity Low_complexity 1 177 0 5 974 306 0 0 0 chr9 51036548 51036582 -73039590 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 5 974 357 232 12 12 chr9 51039625 51039708 -73036464 + ID4 SINE ID 1 83 0 5 974 180 330 20 10 chr9 51039762 51039860 -73036312 - MIRb SINE MIR -139 129 31 5 974 402 251 172 12 chr9 51041847 51042016 -73034156 + MIR SINE MIR 65 260 -2 5 974 439 243 69 80 chr9 51042495 51042683 -73033489 - Charlie19a DNA Charlie -2 384 199 5 974 384 344 0 0 chr9 51042933 51043064 -73033108 + MER5A1 DNA MER1_type 1 131 -35 5 974 2316 162 31 3 chr9 51043542 51043925 -73032247 - ORR1B1 LTR MaLR 0 394 1 6 974 6592 183 90 15 chr9 51043925 51045329 -73030843 - ORR1B1-int LTR MaLR 0 1509 1 6 974 2177 152 67 8 chr9 51045329 51045701 -73030471 - ORR1B1 LTR MaLR 0 394 1 6 974 205 98 24 24 chr9 51046611 51046653 -73029519 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 6 974 206 260 0 0 chr9 51047719 51047769 -73028403 + T-rich Low_complexity Low_complexity 1 50 0 6 974 432 130 0 0 chr9 51049084 51049153 -73027019 + (TCCC)n Simple_repeat Simple_repeat 4 72 0 6 974 741 271 65 65 chr9 51049156 51049448 -73026724 - B4A SINE B4 0 292 1 6 974 294 73 0 0 chr9 51049497 51049538 -73026634 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 974 409 310 60 28 chr9 51049892 51050144 -73026028 - Charlie7 DNA MER1_type -350 2262 2003 6 974 680 199 18 58 chr9 51050188 51050359 -73025813 - ORR1D1 LTR MaLR -210 164 1 6 974 805 157 15 7 chr9 51050410 51050545 -73025627 + B1_Mus2 SINE Alu 9 144 -3 6 974 312 158 0 0 chr9 51050547 51050604 -73025568 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 974 235 293 0 17 chr9 51050642 51050701 -73025471 + Lx8 LINE L1 7176 7233 -240 7 974 323 44 22 0 chr9 51050762 51050807 -73025365 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 974 7208 173 27 42 chr9 51051274 51052846 -73023326 - Lx7 LINE L1 -1614 6082 4526 7 974 3236 104 35 0 chr9 51052846 51053327 -73022845 - MT2B LTR ERVL 0 601 104 7 974 897 159 28 33 chr9 51053329 51053511 -73022661 - Lx7 LINE L1 -1426 4454 4274 7 974 202 312 13 0 chr9 51054577 51054654 -73021518 - MIR SINE MIR -5 257 180 7 974 189 74 0 0 chr9 51055015 51055042 -73021130 + (CAA)n Simple_repeat Simple_repeat 2 28 0 7 974 547 291 34 51 chr9 51055890 51056125 -73020047 - RLTR42-int LTR ERVK -4122 1400 1170 7 974 425 125 28 0 chr9 51056137 51056209 -73019963 + ORR1B2 LTR MaLR 3 76 -291 7 974 2269 312 89 24 chr9 51056212 51057276 -73018896 - Lx8 LINE L1 -252 7221 6089 7 974 312 70 0 0 chr9 51058540 51058583 -73017589 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 974 1064 188 33 24 chr9 51059025 51059238 -73016934 - B3 SINE B2 -1 215 1 8 974 209 398 65 8 chr9 51060882 51061006 -73015166 + MIRb SINE MIR 26 156 -112 8 974 423 0 0 0 chr9 51061131 51061178 -73014994 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 974 7309 161 54 49 chr9 51061661 51061959 -73014213 - Lx5 LINE L1 0 7050 6744 8 974 225 0 0 0 chr9 51061959 51061984 -73014188 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 974 7309 161 54 49 chr9 51061984 51062272 -73013900 - Lx5 LINE L1 -307 6743 6456 8 974 1185 55 0 7 chr9 51062272 51062420 -73013752 + B1_Mus2 SINE Alu 1 147 0 8 974 7309 161 54 49 chr9 51062420 51063074 -73013098 - Lx5 LINE L1 -595 6455 5784 8 974 225 0 0 0 chr9 51063074 51063099 -73013073 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 8 974 1198 62 0 0 chr9 51063101 51063245 -73012927 - B1_Mus2 SINE Alu -2 145 2 8 974 7309 161 54 49 chr9 51063245 51063332 -73012840 - Lx5 LINE L1 -1267 5783 5705 8 974 180 0 0 0 chr9 51063332 51063352 -73012820 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 974 7309 161 53 51 chr9 51063352 51063481 -73012691 - Lx5 LINE L1 -1346 5704 5578 8 974 284 0 0 27 chr9 51063481 51063518 -73012654 + (TTA)n Simple_repeat Simple_repeat 2 37 0 8 974 2433 165 19 77 chr9 51063518 51063714 -73012458 - Lx5 LINE L1 -300 5577 5383 8 974 777 122 16 0 chr9 51063716 51063839 -73012333 + Lx5 LINE L1 5257 5381 -496 8 974 281 240 0 0 chr9 51064223 51064273 -73011899 + ID4 SINE ID 14 63 -20 9 974 519 112 0 0 chr9 51064280 51064378 -73011794 + (TC)n Simple_repeat Simple_repeat 1 98 0 9 974 378 252 97 0 chr9 51064431 51064534 -73011638 + ORR1D2 LTR MaLR 1 113 -257 9 974 352 301 186 33 chr9 51065943 51066247 -73009925 - MLT1A0 LTR MaLR 0 365 19 9 974 353 304 10 0 chr9 51066979 51067081 -73009091 + PB1D10 SINE Alu 6 108 -9 9 974 231 254 0 0 chr9 51067776 51067831 -73008341 + MER5A1 DNA MER1_type 93 147 -19 9 974 296 270 48 29 chr9 51068043 51068146 -73008026 - MIR SINE MIR -70 192 88 9 974 766 280 31 122 chr9 51068668 51068989 -73007183 + B4 SINE B4 1 292 0 9 974 471 187 40 12 chr9 51068989 51069162 -73007010 + (CA)n Simple_repeat Simple_repeat 1 178 0 9 974 260 193 17 17 chr9 51069167 51069225 -73006947 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 9 974 560 184 13 13 chr9 51069227 51069376 -73006796 + (CA)n Simple_repeat Simple_repeat 2 150 0 1 974 219 299 150 0 chr9 51069624 51069751 -73006421 + MIRb SINE MIR 23 168 -100 1 974 1028 225 148 6 chr9 51069760 51070114 -73006058 - MTD LTR MaLR 0 419 1 1 974 186 234 67 135 chr9 51070545 51070634 -73005538 - MIR SINE MIR -81 127 45 1 974 490 269 182 6 chr9 51071827 51072003 -73004169 + ID_B1 SINE B4 3 209 -15 1 974 537 16 0 0 chr9 51072012 51072074 -73004098 + (TAAAA)n Simple_repeat Simple_repeat 4 65 0 1 974 253 241 85 37 chr9 51072279 51072361 -73003811 + MIR3 SINE MIR 91 176 -32 1 974 354 262 89 2 chr9 51072407 51072537 -73003635 + L1MA4 LINE L1 5723 5928 -372 1 974 718 155 93 0 chr9 51072649 51072778 -73003394 - B4 SINE B4 -3 289 149 1 974 519 60 0 0 chr9 51073224 51073291 -73002881 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 974 266 115 19 0 chr9 51073852 51073904 -73002268 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 974 381 176 0 38 chr9 51073905 51074011 -73002161 + GA-rich Low_complexity Low_complexity 1 102 0 1 974 4061 57 0 0 chr9 51074424 51074913 -73001259 + L1_Mus1 LINE L1 6078 6566 -1 1 974 586 157 390 0 chr9 51076011 51076170 -73000002 - URR1A DNA MER1_type 0 226 6 1 974 1079 70 21 14 chr9 51076314 51076458 -72999714 - B1_Mm SINE Alu 0 147 3 1 974 750 53 0 0 chr9 51076581 51076676 -72999496 + (GA)n Simple_repeat Simple_repeat 1 95 0 1 974 313 214 10 10 chr9 51076750 51076849 -72999323 + GA-rich Low_complexity Low_complexity 1 99 0 1 974 195 318 12 12 chr9 51077526 51077612 -72998560 + MIRb SINE MIR 175 260 -8 1 974 24 67 0 0 chr9 51079696 51079741 -72996431 + AT_rich Low_complexity Low_complexity 1 45 0 1 974 374 217 143 34 chr9 51079852 51079971 -72996201 - ID_B1 SINE B4 0 224 93 1 974 22 0 0 0 chr9 51083096 51083118 -72993054 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 378 0 0 0 chr9 51083464 51083506 -72992666 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 974 270 176 0 0 chr9 51085927 51085978 -72990194 + A-rich Low_complexity Low_complexity 1 51 0 1 974 256 160 13 51 chr9 51088990 51089069 -72987103 + A-rich Low_complexity Low_complexity 4 79 0 1 974 298 260 13 0 chr9 51090162 51090239 -72985933 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 974 522 114 0 0 chr9 51090339 51090418 -72985754 + (TCCA)n Simple_repeat Simple_repeat 1 79 0 1 974 250 232 114 14 chr9 51090418 51090483 -72985689 - ID4_ SINE ID -5 78 6 1 974 783 153 275 6 chr9 51092785 51092963 -72983209 - URR1A DNA MER1_type 0 226 1 1 974 378 0 0 0 chr9 51092980 51093022 -72983150 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 974 21 0 0 0 chr9 51093536 51093557 -72982615 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 5251 67 0 1 chr9 51093561 51094217 -72981955 - L1_Mus1 LINE L1 0 6567 5913 1 974 219 246 0 17 chr9 51094364 51094422 -72981750 + GA-rich Low_complexity Low_complexity 4 60 0 1 974 414 0 0 0 chr9 51095077 51095123 -72981049 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 974 803 257 123 100 chr9 51095480 51095969 -72980203 + L1MA6 LINE L1 5734 6233 -67 1 974 1364 227 98 21 chr9 51095969 51096358 -72979814 + MTD LTR MaLR 2 419 0 1 974 203 242 16 0 chr9 51096407 51096469 -72979703 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 974 612 0 0 0 chr9 51097114 51097182 -72978990 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 1 974 234 0 0 0 chr9 51100070 51100096 -72976076 + (A)n Simple_repeat Simple_repeat 1 26 0 1 974 1088 257 130 12 chr9 51100300 51100646 -72975526 + MTD LTR MaLR 18 404 -15 1 974 1026 95 261 6 chr9 51102503 51102683 -72973489 - URR1A DNA MER1_type 0 226 1 1 974 200 256 0 0 chr9 51103192 51103231 -72972941 + polypyrimidine Low_complexity Low_complexity 4 42 0 1 974 484 242 0 17 chr9 51103251 51103432 -72972740 + (TATG)n Simple_repeat Simple_repeat 1 178 0 1 974 369 287 101 22 chr9 51103442 51103581 -72972591 - RSINE1 SINE B4 0 165 16 1 974 540 252 0 53 chr9 51103588 51103739 -72972433 + MLT1C LTR MaLR 40 182 -285 1 974 627 238 137 0 chr9 51103739 51103907 -72972265 + B3 SINE B2 1 191 -25 1 974 23 0 0 0 chr9 51103913 51103936 -72972236 + AT_rich Low_complexity Low_complexity 1 23 0 1 974 549 333 134 5 chr9 51104348 51104571 -72971601 + B4A SINE B4 37 288 -4 1 974 799 293 85 4 chr9 51105050 51105310 -72970862 - B4A SINE B4 -6 286 6 1 974 195 337 48 0 chr9 51105654 51105737 -72970435 + MIR SINE MIR 8 94 -168 1 974 787 305 50 68 chr9 51105829 51106064 -72970108 - MER44B DNA MER2_type -70 480 253 1 974 310 218 12 49 chr9 51106064 51106146 -72970026 - ID4_ SINE ID -3 80 2 1 974 787 305 50 68 chr9 51106146 51106367 -72969805 - MER44B DNA MER2_type -298 252 32 1 974 294 307 34 0 chr9 51106403 51106491 -72969681 - PB1D10 SINE Alu -7 110 20 1 974 234 288 144 0 chr9 51107263 51107402 -72968770 - L1M4c LINE L1 -4156 2870 2712 1 974 325 247 65 43 chr9 51107695 51107869 -72968303 - L1M4c LINE L1 -4731 2371 2076 1 974 27 0 0 0 chr9 51108204 51108231 -72967941 + AT_rich Low_complexity Low_complexity 1 27 0 1 974 1018 270 46 18 chr9 51108238 51108521 -72967651 - B4A SINE B4 -1 291 1 1 974 342 0 0 0 chr9 51108921 51108959 -72967213 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 974 265 322 0 25 chr9 51109019 51109140 -72967032 - L1ME2 LINE L1 -10 6154 6037 1 974 373 324 89 42 chr9 51110778 51110991 -72965181 + MLT1H LTR MaLR 78 300 -249 1 974 236 338 182 0 chr9 51111068 51111222 -72964950 + MLT1H LTR MaLR 308 489 0 1 974 21 0 0 0 chr9 51113700 51113721 -72962451 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 1405 85 11 11 chr9 51113981 51114171 -72962001 + B2_Mm2 SINE B2 3 192 -3 1 974 198 103 0 0 chr9 51114174 51114203 -72961969 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 974 234 0 0 0 chr9 51114732 51114758 -72961414 + (T)n Simple_repeat Simple_repeat 1 26 0 1 974 1208 68 0 0 chr9 51114841 51114989 -72961183 - B1_Mus1 SINE Alu 0 148 1 1 974 405 0 0 0 chr9 51115183 51115228 -72960944 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 974 226 240 0 0 chr9 51115659 51115709 -72960463 + RMER15 LTR ERVL 417 466 -109 1 974 220 317 0 35 chr9 51115715 51115800 -72960372 + GA-rich Low_complexity Low_complexity 4 85 0 1 974 183 100 0 0 chr9 51116405 51116435 -72959737 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 1 974 786 256 23 46 chr9 51116696 51116913 -72959259 + ID_B1 SINE B4 6 217 -7 1 974 439 257 119 0 chr9 51117151 51117260 -72958912 - ID_B1 SINE B4 -9 215 94 1 974 387 0 0 0 chr9 51117264 51117307 -72958865 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 974 372 94 0 0 chr9 51117528 51117581 -72958591 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 121 298 294 152 12 chr9 51118031 51118300 -72957872 + L1MA5 LINE L1 5723 6023 -274 1 975 301 260 82 30 chr9 51118415 51118550 -72957622 + L1MA5 LINE L1 6157 6298 -2 1 975 192 333 53 11 chr9 51118875 51118969 -72957203 - MIRb SINE MIR -54 214 117 1 975 272 228 18 0 chr9 51119006 51119063 -72957109 - B4A SINE B4 -234 58 1 1 975 330 67 0 0 chr9 51119068 51119113 -72957059 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1 975 459 241 32 122 chr9 51119135 51119324 -72956848 - B4 SINE B4 -120 172 1 1 975 201 213 0 0 chr9 51119611 51119658 -72956514 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 975 231 287 0 11 chr9 51119672 51119760 -72956412 + L1MA9 LINE L1 6188 6274 -38 1 975 627 321 76 22 chr9 51119784 51120061 -72956111 + B4 SINE B4 1 292 0 1 975 567 0 0 0 chr9 51121600 51121663 -72954509 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1 975 203 0 37 0 chr9 51121867 51121894 -72954278 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 975 226 106 21 21 chr9 51123035 51123083 -72953089 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 1 975 408 266 62 0 chr9 51123188 51123316 -72952856 - B3A SINE B2 -20 178 43 1 975 1636 279 67 22 chr9 51123844 51124397 -72951775 + Lx8 LINE L1 6820 7397 -76 1 975 206 197 61 0 chr9 51124482 51124548 -72951624 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 1 975 276 77 0 0 chr9 51126033 51126072 -72950100 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1 975 1113 245 63 0 chr9 51127068 51127337 -72948835 + B4A SINE B4 3 288 -4 1 975 576 0 0 0 chr9 51128037 51128101 -72948071 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 975 342 0 0 0 chr9 51129460 51129498 -72946674 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 975 366 194 15 61 chr9 51129552 51129605 -72946567 - RMER17C LTR ERVK -135 275 224 1 975 261 0 0 0 chr9 51129605 51129634 -72946538 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 975 366 194 15 61 chr9 51129634 51129777 -72946395 - RMER17C LTR ERVK -187 223 88 1 975 511 281 70 6 chr9 51129912 51130084 -72946088 - L1MA4A LINE L1 -345 5958 5776 1 975 494 204 182 0 chr9 51130840 51130977 -72945195 + MER5A DNA MER1_type 3 164 -25 1 975 273 57 0 0 chr9 51131703 51131738 -72944434 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 1 975 723 250 73 43 chr9 51131744 51131759 -72944413 - B4A SINE B4 -10 282 270 1 975 180 0 0 0 chr9 51131759 51131779 -72944393 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 975 723 250 73 43 chr9 51131779 51131997 -72944175 - B4A SINE B4 -23 269 42 1 975 1057 105 243 0 chr9 51132367 51132548 -72943624 + URR1B DNA MER1_type 1 225 0 1 975 256 316 112 58 chr9 51132954 51133213 -72942959 + L2a LINE L2 3145 3417 -9 1 975 31 0 0 0 chr9 51133469 51133500 -72942672 + AT_rich Low_complexity Low_complexity 1 31 0 1 975 238 322 0 0 chr9 51133897 51133956 -72942216 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 975 238 73 0 32 chr9 51134303 51134348 -72941824 + L2a LINE L2 3318 3407 -19 2 975 306 0 0 0 chr9 51134352 51134386 -72941786 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 975 1198 159 14 0 chr9 51137926 51138133 -72938039 - URR1A DNA MER1_type 0 226 17 2 975 758 215 51 23 chr9 51138911 51139125 -72937047 - ID_B1 SINE B4 -3 221 2 2 975 831 259 28 28 chr9 51139420 51139674 -72936498 + RCHARR1 DNA MER1_type 103 356 -618 2 975 593 247 117 0 chr9 51139774 51139936 -72936236 - B3A SINE B2 -16 182 2 2 975 276 288 91 25 chr9 51140048 51140169 -72936003 + MER94 DNA AcHobo 1 129 -5 2 975 309 292 159 23 chr9 51140410 51140685 -72935487 + MTEa LTR MaLR 33 374 -5 2 975 856 266 12 113 chr9 51140908 51141243 -72934929 - MTE2a LTR MaLR -64 315 15 2 975 235 308 9 53 chr9 51141264 51141377 -72934795 + CT-rich Low_complexity Low_complexity 5 112 0 2 975 284 152 0 0 chr9 51141389 51141435 -72934737 + MT2A LTR ERVL 17 62 -471 2 975 366 100 0 0 chr9 51142071 51142131 -72934041 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 975 1261 34 7 0 chr9 51142248 51142395 -72933777 + B1_Mus1 SINE Alu 1 148 0 2 975 471 118 0 0 chr9 51142396 51142472 -72933700 + (A)n Simple_repeat Simple_repeat 1 76 0 2 975 206 108 54 0 chr9 51144754 51144791 -72931381 + T-rich Low_complexity Low_complexity 4 42 0 2 975 3490 178 109 10 chr9 51144794 51145499 -72930673 - L1_Mus4 LINE L1 0 6636 5862 2 975 7331 40 5 0 chr9 51145492 51146359 -72929813 - L1Md_F2 LINE L1 -1 6581 5711 2 975 1716 73 26 82 chr9 51146356 51146432 -72929740 - Lx2 LINE L1 -1130 5867 5789 2 975 6306 55 68 26 chr9 51146432 51147310 -72928862 - Lx3_Mus LINE L1 0 7009 6095 2 975 1716 73 26 82 chr9 51147310 51147500 -72928672 - Lx2 LINE L1 -1209 5788 5616 2 975 38 22 0 0 chr9 51148455 51148500 -72927672 + AT_rich Low_complexity Low_complexity 1 45 0 2 975 357 24 0 0 chr9 51148513 51148555 -72927617 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 975 358 385 35 7 chr9 51148561 51148705 -72927467 - RSINE1 SINE B4 -14 151 4 2 975 256 318 0 12 chr9 51148725 51148811 -72927361 + CT-rich Low_complexity Low_complexity 4 88 0 2 975 276 397 0 0 chr9 51149279 51149458 -72926714 + G-rich Low_complexity Low_complexity 1 179 0 2 975 490 182 0 107 chr9 51149414 51149674 -72926498 + GA-rich Low_complexity Low_complexity 1 232 0 2 975 32 0 0 0 chr9 51149859 51149891 -72926281 + AT_rich Low_complexity Low_complexity 1 32 0 2 975 928 282 158 47 chr9 51149909 51150721 -72925451 - L1MC3 LINE L1 -10 7775 6874 2 975 697 184 0 48 chr9 51150724 51150912 -72925260 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 975 1023 265 128 17 chr9 51150939 51151747 -72924425 - L1MC3 LINE L1 -1889 5896 4983 2 975 3424 199 175 13 chr9 51151756 51152597 -72923575 - Lx2B LINE L1 0 7000 6024 2 975 322 297 33 28 chr9 51152634 51152789 -72923383 - L1MC3 LINE L1 -1219 4927 4781 2 975 479 319 0 7 chr9 51153673 51153809 -72922363 + RSINE1 SINE B4 3 137 -28 2 975 4175 55 24 53 chr9 51154320 51154899 -72921273 + L1_Mus2 LINE L1 6005 6566 0 2 975 273 314 42 54 chr9 51155717 51155885 -72920287 + Tigger15a DNA TcMar 500 665 -50 2 975 746 201 14 14 chr9 51156340 51156481 -72919691 + B1_Mur3 SINE Alu 2 142 -7 2 975 765 234 98 5 chr9 51156481 51156674 -72919498 - B3 SINE B2 -1 215 5 2 975 403 329 46 117 chr9 51158360 51158642 -72917530 + MLT1A1 LTR MaLR 103 407 -1 2 975 7689 198 64 48 chr9 51159089 51160875 -72915297 + Lx7 LINE L1 5881 7694 -2 2 975 360 0 0 0 chr9 51161338 51161378 -72914794 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 975 892 323 68 20 chr9 51161716 51162158 -72914014 - MLT1F LTR MaLR -3 545 83 2 975 687 293 73 21 chr9 51162943 51163232 -72912940 - MER2 DNA MER2_type -1 344 41 2 975 311 314 60 54 chr9 51163272 51163440 -72912732 - MIRb SINE MIR -45 223 55 2 975 653 299 96 39 chr9 51163441 51163796 -72912376 + LTR52 LTR ERVL 33 407 -14 2 975 218 239 43 21 chr9 51165549 51165643 -72910529 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 2 975 384 22 0 0 chr9 51166450 51166495 -72909677 + (TTG)n Simple_repeat Simple_repeat 1 45 0 2 975 1149 58 0 0 chr9 51166708 51166846 -72909326 + B1_Mus1 SINE Alu 1 138 -10 2 975 984 18 0 0 chr9 51166846 51166960 -72909212 + (CAAAG)n Simple_repeat Simple_repeat 1 114 0 2 975 589 221 8 8 chr9 51167804 51167936 -72908236 - RCHARR1 DNA MER1_type -17 957 826 2 975 414 221 173 7 chr9 51167951 51168101 -72908071 - Lx2B LINE L1 -10 6990 6816 2 975 351 118 26 13 chr9 51168143 51168220 -72907952 + (TA)n Simple_repeat Simple_repeat 1 78 0 2 975 710 221 0 37 chr9 51168246 51168382 -72907790 + B3A SINE B2 1 131 -67 2 975 2678 244 66 24 chr9 51168449 51169208 -72906964 - RCHARR1 DNA MER1_type -175 799 9 2 975 229 159 16 16 chr9 51169377 51169441 -72906731 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 975 348 24 0 0 chr9 51169760 51169801 -72906371 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2 975 22 0 0 0 chr9 51169988 51170010 -72906162 + AT_rich Low_complexity Low_complexity 1 22 0 2 975 238 319 0 77 chr9 51170020 51170098 -72906074 + ID4_ SINE ID 3 74 -9 2 975 220 314 11 75 chr9 51170098 51170113 -72906059 + B4A SINE B4 3 89 -203 2 975 406 274 19 9 chr9 51170157 51170264 -72905908 + ID_B1 SINE B4 44 151 -73 2 975 628 194 7 7 chr9 51170275 51170420 -72905752 + (CATATA)n Simple_repeat Simple_repeat 6 150 0 2 975 213 118 0 56 chr9 51170438 51170492 -72905680 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 975 472 117 34 20 chr9 51171906 51172054 -72904118 + (TA)n Simple_repeat Simple_repeat 1 150 0 2 975 24 0 0 0 chr9 51172839 51172863 -72903309 + AT_rich Low_complexity Low_complexity 1 24 0 2 975 5632 55 1 19 chr9 51172863 51173588 -72902584 - L1Md_F2 LINE L1 -7 6575 5864 2 975 440 139 0 12 chr9 51174235 51174315 -72901857 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 975 289 297 81 63 chr9 51174481 51174568 -72901604 + MIR SINE MIR 18 102 -160 2 975 2470 40 0 0 chr9 51174568 51174866 -72901306 - L1Md_F2 LINE L1 -12 6570 6273 2 975 289 297 81 63 chr9 51174866 51175001 -72901171 + MIR SINE MIR 103 243 -19 2 975 324 0 0 0 chr9 51175297 51175333 -72900839 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 975 1375 284 38 49 chr9 51175600 51175976 -72900196 - MER82 DNA MER2_type -8 645 275 2 975 1070 135 171 0 chr9 51175976 51176169 -72900003 + URR1A DNA MER1_type 1 226 0 2 975 1375 284 38 49 chr9 51176169 51176244 -72899928 - MER82 DNA MER2_type -379 274 199 2 975 458 299 67 0 chr9 51176693 51176827 -72899345 - MER82 DNA MER2_type -510 143 1 2 975 225 0 0 0 chr9 51177301 51177326 -72898846 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 975 1413 131 13 22 chr9 51177356 51177583 -72898589 - URR1A DNA MER1_type -1 225 1 2 975 23 33 0 0 chr9 51179009 51179039 -72897133 + AT_rich Low_complexity Low_complexity 1 30 0 2 975 387 0 0 0 chr9 51179420 51179463 -72896709 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 975 277 278 0 0 chr9 51180058 51180130 -72896042 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 975 1123 225 53 28 chr9 51180130 51180414 -72895758 - B4A SINE B4 0 292 2 2 975 234 62 0 0 chr9 51181623 51181655 -72894517 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 975 469 163 28 46 chr9 51181704 51181986 -72894186 + (CA)n Simple_repeat Simple_repeat 1 276 0 2 975 254 124 55 22 chr9 51182031 51182122 -72894050 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 975 650 192 0 7 chr9 51182147 51182299 -72893873 + CT-rich Low_complexity Low_complexity 4 154 0 2 975 1202 90 0 11 chr9 51182300 51182479 -72893693 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 2 975 25 31 0 0 chr9 51184164 51184196 -72891976 + AT_rich Low_complexity Low_complexity 1 32 0 2 975 313 302 86 20 chr9 51184621 51184773 -72891399 + MLT1A1 LTR MaLR 247 408 0 2 975 276 220 72 62 chr9 51185982 51186079 -72890093 + MLT1A1 LTR MaLR 311 408 0 2 975 451 133 19 28 chr9 51186660 51186768 -72889404 + (TA)n Simple_repeat Simple_repeat 2 108 0 2 975 692 140 0 23 chr9 51187163 51187339 -72888833 + (TG)n Simple_repeat Simple_repeat 2 173 0 2 975 324 0 0 0 chr9 51187339 51187375 -72888797 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 975 376 130 10 20 chr9 51188704 51188806 -72887366 + (TCTCTG)n Simple_repeat Simple_repeat 6 106 0 2 975 691 309 47 29 chr9 51188814 51189091 -72887081 - B4A SINE B4 -9 283 2 2 975 227 359 37 28 chr9 51189227 51189336 -72886836 - RMER20B LTR ERVK -14 613 504 2 975 613 290 70 137 chr9 51189325 51189897 -72886275 - RMER20B LTR ERVK -15 612 30 2 975 1045 209 94 83 chr9 51189951 51190311 -72885861 + RLTR20C LTR ERVK 1 364 -214 2 975 21 57 0 0 chr9 51190466 51190501 -72885671 + AT_rich Low_complexity Low_complexity 1 35 0 2 975 388 288 93 29 chr9 51190721 51191130 -72885042 + L1M5 LINE L1 2881 3352 -2794 2 975 4240 148 109 67 chr9 51191130 51191994 -72884178 + RMER19B LTR ERVK 1 900 -2 2 975 381 303 134 47 chr9 51191994 51192289 -72883883 + L1M5 LINE L1 3353 3646 -2500 2 975 276 154 0 0 chr9 51192382 51192434 -72883738 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 975 903 251 56 0 chr9 51193236 51193451 -72882721 + B4A SINE B4 4 230 -62 2 975 535 301 27 43 chr9 51193452 51193636 -72882536 + B3A SINE B2 2 182 -16 2 975 183 184 0 0 chr9 51193636 51193674 -72882498 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 975 33 25 0 0 chr9 51193674 51193714 -72882458 + AT_rich Low_complexity Low_complexity 1 40 0 2 975 273 29 0 0 chr9 51193837 51193871 -72882301 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 975 185 317 55 120 chr9 51194633 51194816 -72881356 + L2b LINE L2 2973 3143 -232 2 975 862 244 93 89 chr9 51195419 51195752 -72880420 + ORR1E LTR MaLR 1 374 -5 2 975 1113 69 21 0 chr9 51195863 51196007 -72880165 + B1_Mus1 SINE Alu 2 148 0 2 975 189 74 0 0 chr9 51196016 51196043 -72880129 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 975 22 35 0 0 chr9 51197661 51197690 -72878482 + AT_rich Low_complexity Low_complexity 1 29 0 2 975 4769 93 104 1 chr9 51197729 51198429 -72877743 - L1_Mus3 LINE L1 -5 6633 5862 3 975 713 292 105 32 chr9 51199444 51199783 -72876389 - ORR1E LTR MaLR 0 379 1 3 975 732 265 59 14 chr9 51199784 51200006 -72876166 - MLT1A1 LTR MaLR 0 408 177 3 975 237 267 53 114 chr9 51200012 51200126 -72876046 - RMER4B LTR ERVK 0 585 479 3 975 992 45 37 31 chr9 51200246 51200407 -72875765 + (TTTCC)n Simple_repeat Simple_repeat 3 164 0 3 975 246 62 0 0 chr9 51200407 51200438 -72875734 + (TTA)n Simple_repeat Simple_repeat 2 33 0 3 975 324 161 0 0 chr9 51200447 51200509 -72875663 + CT-rich Low_complexity Low_complexity 3 64 0 3 975 859 135 29 29 chr9 51200515 51200690 -72875482 - RMER4B LTR ERVK -394 191 17 3 975 359 292 37 50 chr9 51200698 51200855 -72875317 - MLT1A1 LTR MaLR -194 171 22 3 975 192 291 0 35 chr9 51200952 51201009 -72875163 - L2a LINE L2 -5 3421 3367 3 975 210 236 122 27 chr9 51201413 51201487 -72874685 + MER5A DNA MER1_type 103 183 -6 3 975 560 230 94 10 chr9 51203184 51203386 -72872786 + L1M5 LINE L1 5517 5735 -444 3 975 314 306 0 0 chr9 51203634 51203755 -72872417 + L1MA10 LINE L1 6212 6332 -2 3 975 656 286 111 0 chr9 51203924 51204141 -72872031 - Tigger5 DNA MER2_type -2164 242 2 3 975 407 331 95 6 chr9 51205466 51205624 -72870548 + MER5A DNA MER1_type 4 175 -14 3 975 875 265 132 12 chr9 51206398 51206799 -72869373 + L1M2 LINE L1 5318 5766 -534 3 975 737 285 78 59 chr9 51206827 51207133 -72869039 - MER82 DNA MER2_type -338 315 4 3 975 561 30 0 0 chr9 51207444 51207511 -72868661 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 975 891 319 110 32 chr9 51208750 51209187 -72866985 + MER73 LTR ERVL 15 485 -159 3 975 387 0 0 0 chr9 51210389 51210432 -72865740 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 975 544 243 129 0 chr9 51210530 51210670 -72865502 + MTD LTR MaLR 158 315 -104 3 975 398 95 0 16 chr9 51210786 51210850 -72865322 - URR1B DNA MER1_type -66 159 97 3 975 306 297 37 28 chr9 51211654 51211792 -72864380 + MLT1I LTR MaLR 298 409 -2 3 975 188 345 184 11 chr9 51212198 51212377 -72863795 + L2a LINE L2 3135 3344 -82 3 975 474 355 48 74 chr9 51212840 51213193 -72862979 + LTR33 LTR ERVL 59 402 -113 3 975 224 333 0 75 chr9 51213201 51213308 -72862864 + MIRb SINE MIR 68 166 -102 3 975 183 42 0 0 chr9 51213352 51213376 -72862796 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 975 987 228 192 10 chr9 51213614 51213911 -72862261 - ORR1E LTR MaLR -3 356 6 3 975 261 0 0 0 chr9 51214841 51214870 -72861302 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 3 975 981 113 18 0 chr9 51215220 51215388 -72860784 + (TC)n Simple_repeat Simple_repeat 2 172 0 3 975 181 185 0 53 chr9 51215392 51215449 -72860723 + CT-rich Low_complexity Low_complexity 2 55 0 3 975 1274 308 75 10 chr9 51215455 51216078 -72860094 - Lx8 LINE L1 0 7473 6810 3 975 367 357 33 90 chr9 51216125 51216424 -72859748 - LTR85b LTR Gypsy? -217 567 286 3 975 758 325 30 76 chr9 51216572 51216895 -72859277 + MLT1A LTR MaLR 1 305 -69 3 975 387 0 0 0 chr9 51216895 51216938 -72859234 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 975 758 325 30 76 chr9 51216938 51216984 -72859188 + MLT1A LTR MaLR 306 353 -21 3 975 1339 194 186 38 chr9 51217073 51217438 -72858734 + MTD LTR MaLR 1 419 0 3 975 27 29 0 0 chr9 51218831 51218865 -72857307 + AT_rich Low_complexity Low_complexity 1 34 0 3 975 353 330 108 20 chr9 51219418 51219613 -72856559 + MIR SINE MIR 10 221 -41 3 975 22 35 0 0 chr9 51219941 51219970 -72856202 + AT_rich Low_complexity Low_complexity 1 29 0 3 975 306 298 67 0 chr9 51220062 51220166 -72856006 - PB1D10 SINE Alu -3 114 4 3 975 481 327 75 36 chr9 51221008 51221420 -72854752 + HAL1 LINE L1 52 479 -2028 3 975 327 330 74 46 chr9 51221874 51222240 -72853932 + HAL1 LINE L1 1059 1434 -1073 3 975 280 271 35 23 chr9 51222501 51222588 -72853584 - MLT1A1 LTR MaLR -294 114 27 3 975 240 331 73 44 chr9 51222898 51223034 -72853138 - MER34 LTR ERV1 -376 166 27 3 975 324 353 40 18 chr9 51223044 51223269 -72852903 + HAL1 LINE L1 1572 1801 -706 3 975 464 320 78 8 chr9 51223492 51223687 -72852485 + B3A SINE B2 1 203 -13 3 975 423 283 130 50 chr9 51223770 51224008 -72852164 + MER2 DNA MER2_type 20 276 -69 3 975 7742 128 8 13 chr9 51224012 51226056 -72850116 + Lx LINE L1 4595 6638 -16 3 975 590 14 0 26 chr9 51226056 51226132 -72850040 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 3 975 285 283 17 73 chr9 51226275 51226362 -72849810 + HAL1 LINE L1 2198 2276 -231 3 975 1387 179 0 4 chr9 51226362 51226587 -72849585 - URR1A DNA MER1_type -1 225 2 3 975 285 283 17 73 chr9 51226587 51226678 -72849494 + HAL1 LINE L1 2277 2366 -141 3 975 1120 252 40 11 chr9 51227797 51228074 -72848098 - B4 SINE B4 0 292 8 3 975 484 332 51 29 chr9 51228207 51228523 -72847649 - MLT1D LTR MaLR -2 503 181 3 975 365 130 29 0 chr9 51228523 51228592 -72847580 + CT-rich Low_complexity Low_complexity 3 73 0 3 975 1268 70 6 28 chr9 51228956 51229132 -72847040 - L1Md_F2 LINE L1 -2 6580 6409 3 975 1171 180 92 0 chr9 51229195 51229401 -72846771 - URR1B DNA MER1_type 0 225 1 3 975 249 285 195 32 chr9 51229461 51229646 -72846526 + L2a LINE L2 3113 3327 -99 3 975 537 55 0 0 chr9 51229841 51229914 -72846258 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 975 726 147 0 0 chr9 51230421 51230550 -72845622 + (GA)n Simple_repeat Simple_repeat 2 130 0 3 975 2204 224 20 22 chr9 51230556 51231050 -72845122 - Lx7 LINE L1 -305 7391 6899 3 975 243 279 190 33 chr9 51231909 51232120 -72844052 + MIRb SINE MIR 1 244 -24 3 975 399 92 0 0 chr9 51233383 51233448 -72842724 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 975 1055 251 57 14 chr9 51233529 51233808 -72842364 - B4A SINE B4 0 292 2 3 975 261 0 0 0 chr9 51233851 51233880 -72842292 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 975 294 98 0 0 chr9 51233880 51233931 -72842241 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 975 4776 57 5 2 chr9 51233997 51234573 -72841599 - L1Md_F2 LINE L1 0 6582 6005 3 975 23 0 0 0 chr9 51234876 51234899 -72841273 + AT_rich Low_complexity Low_complexity 1 23 0 3 975 2488 119 0 0 chr9 51236010 51236337 -72839835 - ORR1A2 LTR MaLR 0 327 1 3 975 1380 64 0 0 chr9 51236587 51237216 -72838956 + (TTC)n Simple_repeat Simple_repeat 1 629 0 3 975 965 55 8 0 chr9 51237219 51237347 -72838825 + (TTCTCC)n Simple_repeat Simple_repeat 4 132 0 3 975 422 191 0 29 chr9 51237675 51237745 -72838427 - ID4_ SINE ID -12 71 4 3 975 282 337 49 10 chr9 51237892 51237994 -72838178 + MLT1H LTR MaLR 119 224 -325 3 975 901 308 6 88 chr9 51238988 51239305 -72836867 - B4A SINE B4 0 292 2 3 975 482 139 0 11 chr9 51239305 51239392 -72836780 + C-rich Low_complexity Low_complexity 6 91 0 3 975 968 146 0 17 chr9 51239389 51239442 -72836730 + polypyrimidine Low_complexity Low_complexity 128 180 0 3 975 1028 136 6 0 chr9 51239442 51239618 -72836554 + (TCC)n Simple_repeat Simple_repeat 2 178 0 3 975 968 146 0 17 chr9 51239618 51239711 -72836461 + polypyrimidine Low_complexity Low_complexity 37 127 0 3 975 1376 6 23 0 chr9 51239711 51239884 -72836288 + (TTC)n Simple_repeat Simple_repeat 3 179 0 3 975 968 146 0 17 chr9 51239884 51239917 -72836255 + polypyrimidine Low_complexity Low_complexity 4 36 0 3 975 937 153 11 0 chr9 51239925 51240101 -72836071 + CT-rich Low_complexity Low_complexity 3 180 0 3 975 302 206 14 0 chr9 51240087 51240160 -72836012 + C-rich Low_complexity Low_complexity 1 74 0 3 975 218 250 0 0 chr9 51240161 51240205 -72835967 + CT-rich Low_complexity Low_complexity 3 46 0 3 975 958 255 15 0 chr9 51240256 51240456 -72835716 - ID_B1 SINE B4 -19 205 3 3 975 337 302 124 58 chr9 51240564 51240821 -72835351 - HAL1 LINE L1 -158 2349 2076 3 975 483 344 43 6 chr9 51240821 51240982 -72835190 + MLT1F2 LTR MaLR 1 167 -393 3 975 657 326 134 55 chr9 51241075 51241511 -72834661 + MLT1E2 LTR MaLR 81 558 -69 3 975 2380 175 177 32 chr9 51241511 51242013 -72834159 + RMER15 LTR ERVL 1 575 0 3 975 657 326 134 55 chr9 51242013 51242083 -72834089 + MLT1E2 LTR MaLR 559 627 0 3 975 203 0 0 36 chr9 51243134 51243162 -72833010 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 3 975 237 243 104 28 chr9 51245181 51245287 -72830885 - L1MEd LINE L1 -5940 179 66 3 975 1072 292 124 24 chr9 51245318 51245728 -72830444 + LTR16A LTR ERVL 1 451 0 3 975 2436 98 115 16 chr9 51245975 51246358 -72829814 - BGLII LTR ERVK 0 421 1 3 975 202 256 171 0 chr9 51246484 51246566 -72829606 - L3 LINE CR1 -858 3631 3536 3 975 333 0 0 0 chr9 51246876 51246913 -72829259 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 975 426 53 0 0 chr9 51246913 51246970 -72829202 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 975 306 0 0 0 chr9 51246970 51247004 -72829168 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 975 186 167 0 0 chr9 51247019 51247055 -72829117 + GA-rich Low_complexity Low_complexity 1 36 0 3 975 207 256 0 0 chr9 51247118 51247161 -72829011 + GA-rich Low_complexity Low_complexity 2 44 0 3 975 1264 61 0 0 chr9 51247292 51247439 -72828733 + B1_Mus2 SINE Alu 1 147 0 3 975 180 0 0 0 chr9 51247978 51247998 -72828174 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 975 1262 245 44 4 chr9 51248014 51248288 -72827884 - B4A SINE B4 0 292 8 3 975 195 42 0 0 chr9 51248434 51248458 -72827714 + (TCCA)n Simple_repeat Simple_repeat 1 24 0 3 975 296 312 47 87 chr9 51248632 51248804 -72827368 - LTR78 LTR ERV1 -942 362 198 3 975 459 0 0 0 chr9 51248931 51248982 -72827190 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 121 2510 97 12 0 chr9 51248982 51249301 -72826871 + ORR1A2 LTR MaLR 5 327 0 3 976 231 114 0 0 chr9 51250148 51250183 -72825989 + (A)n Simple_repeat Simple_repeat 1 35 0 3 976 198 203 15 92 chr9 51250319 51250384 -72825788 + L3 LINE CR1 2177 2236 -2253 4 976 354 23 0 0 chr9 51250491 51250534 -72825638 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 976 235 306 12 12 chr9 51250797 51250883 -72825289 + (TATG)n Simple_repeat Simple_repeat 3 88 0 4 976 234 362 110 18 chr9 51250974 51251202 -72824970 - Lx8 LINE L1 -1 7472 7224 4 976 229 306 44 66 chr9 51251212 51251261 -72824911 - B4A SINE B4 -97 195 107 4 976 239 214 24 0 chr9 51251261 51251303 -72824869 - B1F2 SINE Alu -85 64 22 4 976 391 305 106 7 chr9 51251347 51251489 -72824683 - LTR40a LTR ERVL -361 158 3 4 976 586 287 113 47 chr9 51251540 51251747 -72824425 + B4A SINE B4 2 215 -77 4 976 207 100 0 0 chr9 51251747 51251777 -72824395 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 4 976 586 287 113 47 chr9 51251777 51251825 -72824347 + B4A SINE B4 216 273 -19 4 976 374 151 14 0 chr9 51251844 51251917 -72824255 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 976 4665 155 87 10 chr9 51252448 51252472 -72823700 - RMER19B LTR ERVK -12 890 867 4 976 3894 104 2 36 chr9 51252472 51252607 -72823565 - Lx LINE L1 -1 6653 6529 4 976 2554 118 76 41 chr9 51252607 51253066 -72823106 + IAPLTR2_Mm LTR ERVK 1 475 0 4 976 3894 104 2 36 chr9 51253066 51253487 -72822685 - Lx LINE L1 -126 6528 6116 4 976 4665 155 87 10 chr9 51253487 51254288 -72821884 - RMER19B LTR ERVK -36 866 3 4 976 333 0 0 0 chr9 51255294 51255331 -72820841 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 976 2503 223 30 20 chr9 51255677 51256273 -72819899 - Lx7 LINE L1 -1282 6414 5813 4 976 5092 196 79 77 chr9 51256301 51257576 -72818596 + Lx7 LINE L1 6419 7696 0 4 976 24 53 0 0 chr9 51257779 51257817 -72818355 + AT_rich Low_complexity Low_complexity 1 38 0 4 976 2672 69 27 6 chr9 51259949 51260283 -72815889 - L1Md_F2 LINE L1 -8 6574 6234 4 976 196 315 116 36 chr9 51261121 51261233 -72814939 - L2c LINE L2 -15 3372 3252 4 976 246 318 0 0 chr9 51261626 51261689 -72814483 - MLT1C LTR MaLR -2 465 403 4 976 982 262 66 93 chr9 51261696 51261978 -72814194 + RLTR12B LTR ERVK 5 271 -257 4 976 570 15 0 0 chr9 51261978 51262045 -72814127 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 976 982 262 66 93 chr9 51262045 51262276 -72813896 + RLTR12B LTR ERVK 272 504 -24 4 976 1757 21 5 0 chr9 51263442 51263633 -72812539 - B2_Mm1t SINE B2 -1 192 1 4 976 751 302 73 88 chr9 51264462 51264847 -72811325 - MTE2a LTR MaLR 0 379 1 4 976 816 290 74 129 chr9 51264847 51265211 -72810961 + MER47B DNA MER2_type 1 344 -74 4 976 367 245 52 97 chr9 51265592 51265746 -72810426 + B4 SINE B4 77 223 -69 4 976 803 187 0 7 chr9 51265609 51265749 -72810423 + B1_Mus1 SINE Alu 10 148 0 4 976 414 0 0 0 chr9 51266364 51266410 -72809762 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 4 976 319 304 43 26 chr9 51266410 51266534 -72809638 - MER102b DNA MER1_type -195 146 2 4 976 241 256 99 0 chr9 51268467 51268552 -72807620 - MTE2a LTR MaLR -17 362 273 4 976 228 261 27 80 chr9 51269046 51269090 -72807082 + RSINE1 SINE B4 38 78 -87 4 976 2158 117 36 60 chr9 51269090 51269425 -72806747 + ORR1A2 LTR MaLR 1 327 0 4 976 228 261 27 80 chr9 51269425 51269455 -72806717 + RSINE1 SINE B4 79 108 -57 4 976 449 242 157 38 chr9 51269471 51269630 -72806542 - MER77 LTR ERVL -16 591 414 4 976 875 265 19 19 chr9 51269875 51270090 -72806082 - B3 SINE B2 0 216 2 4 976 232 313 48 46 chr9 51270892 51271026 -72805146 + MIRc SINE MIR 4 131 -137 4 976 2455 48 0 20 chr9 51271950 51272250 -72803922 - L1_Mus1 LINE L1 -129 6438 6145 4 976 836 88 0 0 chr9 51272250 51272364 -72803808 + L1_Mus1 LINE L1 6454 6567 0 4 976 232 302 172 75 chr9 51272804 51272845 -72803327 + PB1D10 SINE Alu 1 42 -75 4 976 2860 31 3 33 chr9 51272845 51273182 -72802990 - IAPLTR2b LTR ERVK 0 327 1 4 976 232 302 172 75 chr9 51273182 51273233 -72802939 + PB1D10 SINE Alu 43 102 -15 4 976 378 348 92 46 chr9 51273514 51273762 -72802410 - L1M5 LINE L1 -3419 2727 2463 4 976 189 0 0 0 chr9 51273762 51273783 -72802389 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 4 976 601 299 0 21 chr9 51273787 51273927 -72802245 - B1F2 SINE Alu -12 137 1 4 976 378 348 92 46 chr9 51273927 51274001 -72802171 - L1M5 LINE L1 -3684 2462 2385 4 976 345 282 99 0 chr9 51274262 51274404 -72801768 + L1MC LINE L1 2409 2564 -3582 4 976 485 187 9 45 chr9 51274420 51274532 -72801640 + Lx4B LINE L1 6874 6981 -77 4 976 1093 295 84 53 chr9 51274566 51275303 -72800869 + L1MC LINE L1 2545 3304 -2842 4 976 4081 122 3 2 chr9 51275284 51275877 -72800295 + Lx2 LINE L1 6052 6645 -352 4 976 872 119 286 6 chr9 51275875 51276053 -72800119 + Lx LINE L1 6427 6654 0 4 976 1922 78 63 21 chr9 51276111 51276398 -72799774 + Lx LINE L1 6355 6653 -1 4 976 469 356 20 0 chr9 51276826 51276975 -72799197 + MER44D DNA MER2_type 101 252 -453 4 976 351 278 66 50 chr9 51276984 51277055 -72799117 + Tigger7 DNA MER2_type 336 411 -2080 4 976 2608 66 83 43 chr9 51277055 51277450 -72798722 + RLTR10A LTR ERVK 1 411 0 4 976 351 278 66 50 chr9 51277450 51277499 -72798673 + Tigger7 DNA MER2_type 412 458 -2033 4 976 290 77 6 6 chr9 51277781 51277852 -72798320 + L1_Mus1 LINE L1 6510 6580 -2 4 976 245 305 37 37 chr9 51278486 51278622 -72797550 + LTR88a LTR Gypsy 241 376 -440 4 976 336 94 0 0 chr9 51279138 51279191 -72796981 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 976 2354 211 2 12 chr9 51281242 51281665 -72794507 - MTD LTR MaLR 0 419 1 4 976 425 247 212 28 chr9 51282876 51283055 -72793117 + ID_B1 SINE B4 5 216 -8 4 976 236 281 0 15 chr9 51283254 51283319 -72792853 + MIRm SINE MIR 210 273 -3 4 976 246 306 53 18 chr9 51283860 51283973 -72792199 + MIR3 SINE MIR 85 201 -7 4 976 282 73 0 0 chr9 51284287 51284328 -72791844 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 4 976 299 363 248 36 chr9 51284789 51285154 -72791018 - MLT1K LTR MaLR -1 594 153 4 976 522 323 109 75 chr9 51285549 51285817 -72790355 - LTR16E2 LTR ERVL -6 562 256 4 976 2265 107 46 0 chr9 51286629 51286956 -72789216 + L1_Mus3 LINE L1 6286 6627 -11 4 976 183 156 62 62 chr9 51287253 51287301 -72788871 + L3 LINE CR1 3471 3518 -971 4 976 1815 229 48 91 chr9 51287525 51288457 -72787715 + RMER17B LTR ERVK 1 904 -4 4 976 767 301 267 11 chr9 51290278 51290899 -72785273 - L1MB1 LINE L1 -160 6131 5352 4 976 800 229 87 0 chr9 51290909 51291140 -72785032 - Lx9 LINE L1 -11 7633 7383 4 976 206 250 11 45 chr9 51292203 51292291 -72783881 + CT-rich Low_complexity Low_complexity 1 85 0 4 976 1756 211 78 11 chr9 51292439 51292834 -72783338 - MTD LTR MaLR -15 404 1 4 976 445 171 9 0 chr9 51293110 51293202 -72782970 - L1_Mur2 LINE L1 -908 4972 4877 4 976 1850 172 37 52 chr9 51293189 51293538 -72782634 + Lx4A LINE L1 6710 7053 -5 4 976 520 279 28 14 chr9 51294456 51294598 -72781574 - B1F SINE Alu -5 144 1 4 976 640 249 158 0 chr9 51294624 51294789 -72781383 - B3A SINE B2 -7 191 1 4 976 192 367 73 0 chr9 51295403 51295512 -72780660 + MIRb SINE MIR 149 265 -3 4 976 815 280 65 65 chr9 51296593 51296899 -72779273 - ORR1E LTR MaLR -51 308 3 4 976 2072 217 39 15 chr9 51296904 51297315 -72778857 + MTC LTR MaLR 1 421 0 4 976 450 167 0 0 chr9 51297414 51297498 -72778674 + CT-rich Low_complexity Low_complexity 1 84 0 4 976 422 143 0 13 chr9 51298829 51298907 -72777265 + CT-rich Low_complexity Low_complexity 3 79 0 4 976 1093 123 12 6 chr9 51298910 51299074 -72777098 - B2_Mm2 SINE B2 -27 168 4 4 976 348 316 123 6 chr9 51299286 51299474 -72776698 - MIRb SINE MIR -21 241 35 4 976 4380 111 33 0 chr9 51299816 51300421 -72775751 + Lx3C LINE L1 6344 6968 -8 4 976 387 0 0 0 chr9 51300422 51300465 -72775707 + (TAA)n Simple_repeat Simple_repeat 3 45 0 4 976 408 310 160 21 chr9 51300556 51300793 -72775379 + RMER15 LTR ERVL 292 561 -14 4 976 1064 30 8 0 chr9 51300853 51300985 -72775187 + (TCTA)n Simple_repeat Simple_repeat 4 136 0 4 976 252 62 0 0 chr9 51301378 51301410 -72774762 - MT2A LTR ERVL -1 532 501 4 976 263 80 40 0 chr9 51301414 51301464 -72774708 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 4 976 303 28 0 0 chr9 51301474 51301510 -72774662 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 976 252 0 0 0 chr9 51301512 51301540 -72774632 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 976 585 239 33 21 chr9 51301559 51301706 -72774466 - MT2A LTR ERVL -464 137 1 4 976 9965 78 37 7 chr9 51302171 51304107 -72772065 - Lx3_Mus LINE L1 -1 7008 5011 4 976 8219 62 14 3 chr9 51304132 51305855 -72770317 - L1Md_F2 LINE L1 0 6582 4832 4 976 303 71 0 0 chr9 51306136 51306178 -72769994 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 976 22 0 0 0 chr9 51306300 51306322 -72769850 + AT_rich Low_complexity Low_complexity 1 22 0 4 976 198 267 67 0 chr9 51306603 51306663 -72769509 - MIR SINE MIR -31 231 168 4 976 226 316 92 31 chr9 51310596 51310694 -72765478 + MIRb SINE MIR 54 157 -111 4 976 207 327 57 9 chr9 51311076 51311181 -72764991 + L2c LINE L2 3039 3148 -239 4 976 771 311 69 21 chr9 51311541 51311608 -72764564 - L1MA4 LINE L1 -279 6021 5950 4 976 363 23 0 0 chr9 51311608 51311652 -72764520 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 976 771 303 173 31 chr9 51311652 51312133 -72764039 - L1MA4 LINE L1 -347 5950 5398 4 976 1207 108 50 17 chr9 51312625 51312804 -72763368 + B2_Mm2 SINE B2 1 185 -10 4 976 1091 147 147 5 chr9 51312953 51313151 -72763021 - URR1A DNA MER1_type 0 226 1 4 976 2052 126 0 65 chr9 51313244 51313584 -72762588 - ORR1A3 LTR MaLR -8 318 1 4 976 270 342 66 8 chr9 51313953 51314074 -72762098 - MIRb SINE MIR -23 245 118 4 976 428 329 128 78 chr9 51314372 51314526 -72761646 - L2 LINE L2 -1787 1632 1468 4 976 688 254 416 7 chr9 51314526 51314819 -72761353 - MTD LTR MaLR -4 415 3 5 976 387 0 0 0 chr9 51314824 51314867 -72761305 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 976 428 329 128 78 chr9 51314867 51315332 -72760840 - L2 LINE L2 -1952 1467 976 4 976 207 100 0 0 chr9 51316110 51316140 -72760032 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 976 269 235 7 29 chr9 51316623 51316763 -72759409 + (TATG)n Simple_repeat Simple_repeat 4 140 0 5 976 210 362 17 0 chr9 51317209 51317267 -72758905 - PB1 SINE Alu -66 61 3 5 976 213 301 134 75 chr9 51317271 51317458 -72758714 - MIRb SINE MIR -60 208 11 5 976 28766 118 22 35 chr9 51318125 51323505 -72752667 + L1VL4 LINE L1 242 5533 -350 5 976 257 86 0 0 chr9 51323505 51323540 -72752632 - ORR1A4 LTR MaLR -294 35 1 5 976 496 141 75 11 chr9 51323540 51323633 -72752539 + MTB_Mm LTR MaLR 309 407 0 5 976 1624 247 88 8 chr9 51323842 51324226 -72751946 + MTD LTR MaLR 5 419 0 5 976 306 361 105 0 chr9 51324307 51324440 -72751732 + MLT2B5 LTR ERVL 69 215 -386 5 976 728 233 184 17 chr9 51324554 51324861 -72751311 + ORR1E LTR MaLR 3 379 0 5 976 795 318 14 18 chr9 51325542 51325760 -72750412 + LTR16C LTR ERVL 273 489 0 5 976 1069 329 25 3 chr9 51325849 51326166 -72750006 - MER102b DNA MER1_type -5 336 13 5 976 1017 67 0 0 chr9 51326323 51326457 -72749715 + (GA)n Simple_repeat Simple_repeat 1 134 0 5 976 488 290 18 61 chr9 51327153 51327381 -72748791 + L1MA9 LINE L1 6038 6255 -57 5 976 324 313 23 38 chr9 51327477 51327644 -72748528 + L1MC4a LINE L1 7518 7795 -200 5 976 1260 55 7 0 chr9 51327652 51327798 -72748374 + B1_Mus1 SINE Alu 2 148 0 5 976 760 12 0 0 chr9 51327917 51328001 -72748171 - L1Md_F2 LINE L1 -510 6072 5989 5 976 4267 40 0 0 chr9 51328001 51328478 -72747694 + L1Md_F2 LINE L1 6106 6582 0 5 976 3278 56 15 5 chr9 51328691 51329087 -72747085 + MTB LTR MaLR 1 400 0 5 976 307 278 14 0 chr9 51329087 51329159 -72747013 + RSINE1 SINE B4 80 152 -13 5 976 542 333 164 19 chr9 51329238 51329406 -72746766 + Charlie1a DNA MER1_type 693 862 -593 5 976 6020 92 30 6 chr9 51329406 51330228 -72745944 + Lx3_Mus LINE L1 6166 7007 -2 5 976 542 333 164 19 chr9 51330228 51330491 -72745681 + Charlie1a DNA MER1_type 863 1186 -269 5 976 301 219 58 50 chr9 51330541 51330661 -72745511 + Charlie1a DNA MER1_type 1335 1455 0 5 976 225 231 0 0 chr9 51331118 51331170 -72745002 - MIRb SINE MIR -35 233 182 5 976 998 295 76 83 chr9 51332430 51332579 -72743593 - L1MA5 LINE L1 -1 6299 6159 5 976 546 16 0 0 chr9 51332579 51332642 -72743530 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 976 998 295 76 83 chr9 51332642 51333134 -72743038 - L1MA5 LINE L1 -142 6158 5662 5 976 23 0 0 0 chr9 51333297 51333320 -72742852 + AT_rich Low_complexity Low_complexity 1 23 0 5 976 321 26 0 0 chr9 51333546 51333584 -72742588 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 976 1184 65 0 0 chr9 51333584 51333723 -72742449 - B1_Mus1 SINE Alu -9 139 1 5 976 21 0 0 0 chr9 51334086 51334107 -72742065 + AT_rich Low_complexity Low_complexity 1 21 0 5 976 1494 269 41 56 chr9 51335443 51335979 -72740193 + RMER5 LTR ERV1 5 532 -2 5 976 194 239 55 27 chr9 51335990 51336063 -72740109 - L2 LINE L2 -576 2843 2769 5 976 513 320 36 107 chr9 51336083 51336293 -72739879 - RLTR12B LTR ERVK -47 481 279 5 976 387 0 0 0 chr9 51336293 51336336 -72739836 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 976 513 320 36 107 chr9 51336336 51336370 -72739802 - RLTR12B LTR ERVK -250 278 260 5 976 734 86 9 0 chr9 51336370 51336486 -72739686 + (TC)n Simple_repeat Simple_repeat 2 118 0 5 976 513 320 36 107 chr9 51336486 51336708 -72739464 - RLTR12B LTR ERVK -269 259 47 5 976 299 93 0 53 chr9 51337341 51337398 -72738774 + (A)n Simple_repeat Simple_repeat 1 54 0 5 976 2315 206 80 13 chr9 51340038 51340563 -72735609 + RMER1C Other Other 781 1340 -2 5 976 556 156 316 48 chr9 51340956 51341124 -72735048 + B3 SINE B2 3 215 -1 5 976 944 206 194 0 chr9 51341139 51341319 -72734853 + B3 SINE B2 2 216 0 5 976 520 315 38 84 chr9 51342436 51342699 -72733473 + MLT1A1 LTR MaLR 31 281 -127 5 976 378 0 0 0 chr9 51342699 51342741 -72733431 + (A)n Simple_repeat Simple_repeat 1 42 0 5 976 421 250 46 53 chr9 51342741 51342832 -72733340 + MLT1A1 LTR MaLR 279 364 -44 5 976 2494 44 0 10 chr9 51342832 51343130 -72733042 + L1Md_F2 LINE L1 6280 6574 -8 5 976 421 250 46 53 chr9 51343130 51343169 -72733003 + MLT1A1 LTR MaLR 365 408 0 5 976 765 194 0 0 chr9 51344032 51344187 -72731985 + CT-rich Low_complexity Low_complexity 2 156 0 5 976 1097 51 0 14 chr9 51344199 51344339 -72731833 - B1_Mm SINE Alu -1 146 9 5 976 4487 106 49 8 chr9 51344608 51345243 -72730929 + Lx3C LINE L1 6307 6967 -9 5 976 33 0 0 0 chr9 51345250 51345283 -72730889 + AT_rich Low_complexity Low_complexity 1 33 0 5 976 22 35 0 0 chr9 51345444 51345473 -72730699 + AT_rich Low_complexity Low_complexity 1 29 0 5 976 193 320 132 58 chr9 51345724 51345913 -72730259 + MIR3 SINE MIR 3 205 -3 5 976 276 207 56 21 chr9 51346048 51346191 -72729981 + (TA)n Simple_repeat Simple_repeat 1 148 0 5 976 692 227 208 27 chr9 51346499 51346793 -72729379 + Lx8 LINE L1 7125 7471 -2 5 976 334 294 61 52 chr9 51348815 51348930 -72727242 + MLT1J1 LTR MaLR 5 120 -324 5 976 943 254 13 21 chr9 51350142 51350375 -72725797 + ORR1D2 LTR MaLR 137 367 -3 5 976 2393 175 34 10 chr9 51350398 51350807 -72725365 + MTC LTR MaLR 1 419 -2 5 976 393 318 27 0 chr9 51350880 51350990 -72725182 + PB1D10 SINE Alu 3 115 -2 5 976 185 364 51 32 chr9 51352526 51352682 -72723490 + MIRb SINE MIR 110 268 0 5 976 198 0 0 0 chr9 51352738 51352760 -72723412 + (CCA)n Simple_repeat Simple_repeat 1 22 0 5 976 3894 204 111 68 chr9 51352905 51353769 -72722403 - RMER19B LTR ERVK 0 902 2 5 976 870 62 0 0 chr9 51355082 51355195 -72720977 + (TC)n Simple_repeat Simple_repeat 1 113 0 5 976 189 0 0 0 chr9 51355380 51355401 -72720771 + (T)n Simple_repeat Simple_repeat 1 21 0 5 976 34 65 0 0 chr9 51355466 51355528 -72720644 + AT_rich Low_complexity Low_complexity 1 62 0 5 976 237 284 37 0 chr9 51355645 51355726 -72720446 + MTEa LTR MaLR 293 376 -3 5 976 262 300 8 60 chr9 51356349 51356466 -72719706 + PB1D7 SINE Alu 4 114 -6 5 976 194 345 44 11 chr9 51356850 51356941 -72719231 - L2c LINE L2 -184 3203 3110 5 976 231 61 0 0 chr9 51357122 51357155 -72719017 + (T)n Simple_repeat Simple_repeat 1 33 0 5 976 216 0 0 0 chr9 51357250 51357274 -72718898 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 976 443 189 33 11 chr9 51358358 51358449 -72717723 + PB1D10 SINE Alu 18 110 -7 5 976 182 231 15 0 chr9 51358450 51358515 -72717657 + GA-rich Low_complexity Low_complexity 1 66 0 5 976 369 0 0 0 chr9 51359464 51359505 -72716667 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 976 206 370 129 11 chr9 51359630 51359816 -72716356 - L2c LINE L2 -508 2911 2704 5 976 236 281 0 0 chr9 51360291 51360348 -72715824 + L2a LINE L2 3368 3424 -2 5 976 334 186 77 67 chr9 51360495 51360599 -72715573 - MTD LTR MaLR 0 419 315 5 976 730 236 0 0 chr9 51360614 51360754 -72715418 - ORR1D-int LTR MaLR -518 852 713 5 976 851 267 64 0 chr9 51360940 51361142 -72715030 + ID_B1 SINE B4 8 222 -2 5 976 426 282 29 0 chr9 51361186 51361289 -72714883 - PB1D10 SINE Alu -2 115 10 5 976 625 325 6 0 chr9 51361208 51361365 -72714807 - ID_B1 SINE B4 -53 171 14 5 976 201 273 0 35 chr9 51362463 51362520 -72713652 + GA-rich Low_complexity Low_complexity 4 58 0 5 976 548 195 171 0 chr9 51363215 51363338 -72712834 - B1F SINE Alu -1 148 5 5 976 182 256 103 0 chr9 51363373 51363451 -72712721 - MIR SINE MIR -98 164 79 5 976 1034 280 135 40 chr9 51365630 51366436 -72709736 + L1MA8 LINE L1 2627 3509 -2631 5 976 441 250 28 2 chr9 51366570 51366698 -72709474 + L1MA8 LINE L1 3473 3605 -2535 5 976 905 283 19 0 chr9 51366702 51366960 -72709212 + RMER1C Other Other 623 885 -457 5 976 1128 285 23 26 chr9 51367009 51367395 -72708777 + L1MA8 LINE L1 5442 5826 -465 5 976 523 219 81 8 chr9 51367396 51367520 -72708652 - Tigger1 DNA MER2_type -250 2168 2036 5 976 622 231 166 10 chr9 51367537 51367814 -72708358 + L1MA8 LINE L1 5814 6133 -50 5 976 1990 196 77 15 chr9 51368036 51368491 -72707681 - RLTR11A LTR ERVK 0 528 46 5 976 5123 63 86 2 chr9 51368493 51369072 -72707100 + L1Md_F2 LINE L1 5881 6481 -101 5 976 195 42 0 0 chr9 51369072 51369096 -72707076 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 5 976 5123 63 86 2 chr9 51369096 51369154 -72707018 + L1Md_F2 LINE L1 6482 6570 -12 5 976 453 196 23 0 chr9 51371302 51371409 -72704763 - L1_Mm LINE L1 -1289 4591 4483 5 976 414 0 0 0 chr9 51371474 51371520 -72704652 + (CTATA)n Simple_repeat Simple_repeat 4 49 0 5 976 303 257 106 2 chr9 51371834 51371924 -72704248 + PB1 SINE Alu 13 114 -13 5 976 38873 29 1 0 chr9 51372688 51379343 -72696829 - L1Md_T LINE L1 0 6585 1 5 976 324 0 0 0 chr9 51379383 51379419 -72696753 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 976 614 47 12 0 chr9 51379745 51379831 -72696341 + (GGAA)n Simple_repeat Simple_repeat 3 89 0 5 977 427 83 42 0 chr9 51380953 51381025 -72695147 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 5 977 554 41 0 14 chr9 51381015 51381089 -72695083 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 5 977 315 272 105 60 chr9 51381098 51381231 -72694941 - ID_B1 SINE B4 -1 223 85 5 977 490 299 82 0 chr9 51381301 51381435 -72694737 - ID_B1 SINE B4 0 224 80 5 977 214 342 141 8 chr9 51381855 51381976 -72694196 + B1F SINE Alu 13 149 0 5 977 420 99 0 0 chr9 51382973 51383044 -72693128 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 977 3138 96 28 5 chr9 51384029 51384457 -72691715 + L1_Mus4 LINE L1 6193 6630 -6 5 977 351 218 82 82 chr9 51385256 51385366 -72690806 + MER94 DNA AcHobo 24 133 -1 5 977 621 145 15 15 chr9 51387391 51387524 -72688648 + CT-rich Low_complexity Low_complexity 2 134 0 5 977 306 0 0 0 chr9 51387587 51387621 -72688551 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 977 455 273 28 35 chr9 51387877 51388021 -72688151 + ID_B1 SINE B4 82 224 0 5 977 4240 106 2 16 chr9 51388724 51389306 -72686866 + L1_Mus4 LINE L1 6058 6631 -5 6 977 678 109 0 0 chr9 51389313 51389414 -72686758 + (GAGAA)n Simple_repeat Simple_repeat 2 102 0 6 977 480 288 149 46 chr9 51389606 51389934 -72686238 - RMER10A LTR ERVL -69 373 12 6 977 546 29 0 0 chr9 51390599 51390667 -72685505 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 977 456 19 0 0 chr9 51391578 51391631 -72684541 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 977 19052 68 8 2 chr9 51393326 51395790 -72680382 + L1_Mm LINE L1 2729 5207 -676 6 977 181 379 34 11 chr9 51395808 51395896 -72680276 + MIR SINE MIR 43 132 -76 6 977 1031 260 240 25 chr9 51396612 51397239 -72678933 - L1M2 LINE L1 -2329 3814 3040 6 977 200 35 35 0 chr9 51397239 51397268 -72678904 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 6 977 974 277 0 5 chr9 51397268 51397471 -72678701 - B3 SINE B2 -14 202 1 6 977 1031 260 240 25 chr9 51397471 51397514 -72678658 - L1M2 LINE L1 -3104 3039 3000 6 977 969 324 39 33 chr9 51397513 51397902 -72678270 + Lx8 LINE L1 6929 7319 -154 6 977 401 332 71 16 chr9 51397911 51398165 -72678007 + L1M2 LINE L1 4978 5245 -898 6 977 228 229 80 67 chr9 51398982 51399057 -72677115 + ORR1C1 LTR MaLR 108 183 -195 6 977 221 209 23 0 chr9 51399290 51399333 -72676839 + B4 SINE B4 4 47 -245 6 977 180 0 0 0 chr9 51399420 51399440 -72676732 + (T)n Simple_repeat Simple_repeat 1 20 0 6 977 444 50 0 0 chr9 51399440 51399500 -72676672 - B1_Mm SINE Alu 0 147 88 6 977 306 181 107 40 chr9 51399500 51399515 -72676657 - ID_B1 SINE B4 0 224 145 6 977 185 302 119 50 chr9 51400260 51400361 -72675811 - MIRm SINE MIR -159 117 10 6 977 2148 189 42 8 chr9 51400768 51401146 -72675026 + ORR1B1 LTR MaLR 1 391 -3 6 977 530 199 166 19 chr9 51401243 51401448 -72674724 - Lx9 LINE L1 -36 7608 7374 6 977 378 0 0 0 chr9 51402771 51402813 -72673359 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 977 1298 235 15 0 chr9 51403236 51403504 -72672668 - MTD LTR MaLR -134 285 14 6 977 403 107 0 0 chr9 51403722 51403778 -72672394 - Lx3C LINE L1 -121 6855 6800 6 977 3680 133 22 14 chr9 51404434 51405058 -72671114 - RMER6A LTR ERVK -58 698 70 6 977 509 265 104 6 chr9 51405379 51405542 -72670630 - ORR1D2 LTR MaLR -184 186 8 6 977 311 383 19 7 chr9 51406472 51406627 -72669545 - MIRb SINE MIR -86 182 26 6 977 2544 298 52 4 chr9 51407643 51408458 -72667714 + Lx8 LINE L1 6200 7053 -420 6 977 1009 264 99 11 chr9 51408487 51408851 -72667321 - L1MA9 LINE L1 -216 6096 5701 6 977 692 270 163 54 chr9 51408848 51409161 -72667011 - Lx8 LINE L1 -1059 6414 6068 6 977 251 316 149 28 chr9 51409715 51409930 -72666242 + MIR SINE MIR 4 244 -18 6 977 1268 184 13 39 chr9 51410026 51410258 -72665914 - URR1A DNA MER1_type 0 226 1 6 977 191 337 43 125 chr9 51411159 51411440 -72664732 + L2b LINE L2 3037 3294 -81 6 977 23 0 0 0 chr9 51411490 51411513 -72664659 + AT_rich Low_complexity Low_complexity 1 23 0 6 977 2753 75 6 6 chr9 51411526 51411873 -72664299 + L1_Mus3 LINE L1 6280 6626 -12 6 977 836 53 0 9 chr9 51411876 51411991 -72664181 + (GGAAA)n Simple_repeat Simple_repeat 3 116 0 6 977 227 361 77 6 chr9 51412293 51412449 -72663723 - MER121 Unknown Unknown -173 239 73 6 977 468 0 0 0 chr9 51412510 51412562 -72663610 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 977 342 0 0 0 chr9 51412562 51412599 -72663573 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 977 243 227 44 44 chr9 51412845 51412991 -72663181 + (CA)n Simple_repeat Simple_repeat 1 147 0 6 977 186 43 0 0 chr9 51412991 51413014 -72663158 + (CCA)n Simple_repeat Simple_repeat 3 25 0 6 977 243 227 44 44 chr9 51413014 51413047 -72663125 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 977 563 285 84 28 chr9 51413129 51413322 -72662850 - B3A SINE B2 -10 185 1 6 977 1230 231 56 7 chr9 51413912 51414254 -72661918 - Lx9 LINE L1 -1712 5932 5541 6 977 1265 41 0 20 chr9 51414325 51414474 -72661698 + B1_Mus1 SINE Alu 3 148 0 6 977 322 221 40 6 chr9 51414539 51414712 -72661460 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 977 2975 283 79 45 chr9 51414714 51416062 -72660110 + Lx9 LINE L1 6249 7641 -3 6 977 225 229 32 16 chr9 51417734 51417796 -72658376 - ORR1E LTR MaLR -296 63 1 6 977 231 257 0 0 chr9 51418107 51418181 -72657991 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 6 977 302 320 110 7 chr9 51419329 51419483 -72656689 + LTR89 LTR ERVL? 56 225 -654 6 977 1010 125 11 54 chr9 51419520 51419706 -72656466 + URR1B DNA MER1_type 46 223 -2 6 977 213 139 0 0 chr9 51420428 51420471 -72655701 + (T)n Simple_repeat Simple_repeat 1 43 0 6 977 275 188 78 0 chr9 51420472 51420536 -72655636 - L1M2 LINE L1 -3330 2813 2745 6 977 320 292 0 0 chr9 51421539 51421628 -72654544 + PB1D10 SINE Alu 27 115 -2 6 977 2351 105 88 9 chr9 51421770 51422193 -72653979 - MusHAL1 LINE L1 -1789 923 468 6 977 38967 28 0 0 chr9 51422164 51428567 -72647605 - L1Md_T LINE L1 0 6585 86 6 977 276 178 68 29 chr9 51429196 51429477 -72646695 + (TCTA)n Simple_repeat Simple_repeat 1 292 0 6 977 211 150 0 24 chr9 51429852 51429893 -72646279 - L3 LINE CR1 -2428 2061 2022 6 977 2530 146 53 5 chr9 51433007 51433405 -72642767 + MTC LTR MaLR 5 421 0 6 977 364 276 117 63 chr9 51433673 51433977 -72642195 + MLT1C LTR MaLR 109 441 -26 6 977 223 171 124 0 chr9 51434350 51434419 -72641753 + MIRb SINE MIR 184 260 -2 6 977 246 263 0 0 chr9 51434777 51434834 -72641338 + MIRc SINE MIR 88 144 -124 6 977 521 253 122 51 chr9 51436402 51436692 -72639480 - L1MA7 LINE L1 -449 5842 5530 6 977 774 146 5 38 chr9 51436938 51437123 -72639049 + GA-rich Low_complexity Low_complexity 1 179 0 6 977 2560 233 170 34 chr9 51437271 51438214 -72637958 + L1MC1 LINE L1 5186 6263 -70 6 977 216 0 0 0 chr9 51438214 51438238 -72637934 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 977 2560 231 178 36 chr9 51438238 51438304 -72637868 + L1MC1 LINE L1 6264 6330 -3 6 977 237 336 87 32 chr9 51438796 51439014 -72637158 - L2b LINE L2 -215 3160 2931 6 977 403 353 101 27 chr9 51440686 51441024 -72635148 + L4 LINE RTE 574 936 -1093 6 977 252 0 0 0 chr9 51441197 51441225 -72634947 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 6 977 1215 76 0 0 chr9 51441225 51441369 -72634803 - B1_Mus1 SINE Alu -2 146 3 6 977 863 261 75 82 chr9 51441934 51442353 -72633819 + MLT2B4 LTR ERVL 17 549 -7 6 977 288 226 0 46 chr9 51442702 51442767 -72633405 + RMER15 LTR ERVL 3 64 -511 6 977 962 199 61 0 chr9 51442778 51442974 -72633198 - URR1B DNA MER1_type 0 225 18 6 977 1363 272 24 178 chr9 51442968 51443558 -72632614 + RMER15 LTR ERVL 74 572 -3 6 977 643 370 63 34 chr9 51443779 51444254 -72631918 - MLT1L LTR MaLR -52 558 70 6 977 191 318 130 40 chr9 51444935 51445112 -72631060 - MIR3 SINE MIR -10 198 6 6 977 588 121 0 0 chr9 51445114 51445205 -72630967 + (TCCC)n Simple_repeat Simple_repeat 3 93 0 6 977 232 217 33 16 chr9 51445839 51445900 -72630272 + U1 snRNA snRNA 4 65 -100 6 977 326 304 10 19 chr9 51446091 51446195 -72629977 - MIRm SINE MIR -123 153 51 6 977 221 308 15 0 chr9 51446410 51446475 -72629697 - MIR SINE MIR -107 101 36 6 977 229 336 87 29 chr9 51446800 51446938 -72629234 + L3 LINE CR1 3320 3465 -1024 6 977 814 292 77 12 chr9 51447170 51447416 -72628756 + B4A SINE B4 1 262 -30 6 977 306 0 0 0 chr9 51447420 51447454 -72628718 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 977 390 301 23 117 chr9 51447601 51447660 -72628512 - MTEa LTR MaLR -214 165 121 6 977 1523 80 0 11 chr9 51447660 51447849 -72628323 + B2_Mm2 SINE B2 3 189 -6 6 977 390 301 23 117 chr9 51447849 51447917 -72628255 - MTEa LTR MaLR -259 120 50 6 977 511 335 30 30 chr9 51452096 51452330 -72623842 + MIRb SINE MIR 25 258 -10 6 977 628 363 92 6 chr9 51452348 51452697 -72623475 - L3 LINE CR1 -65 4424 4046 6 977 195 220 0 0 chr9 51453086 51453136 -72623036 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 977 428 0 19 0 chr9 51453137 51453189 -72622983 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 6 977 769 114 17 9 chr9 51453220 51453335 -72622837 - URR1A DNA MER1_type -110 116 1 6 977 662 285 52 63 chr9 51453511 51453752 -72622420 + ORR1E LTR MaLR 8 277 -102 6 977 327 326 78 0 chr9 51453752 51453893 -72622279 - RMER15 LTR ERVL 0 575 424 6 977 243 336 62 53 chr9 51453903 51454016 -72622156 + MER47B DNA MER2_type 1 114 -304 6 977 251 347 87 29 chr9 51454118 51454290 -72621882 + MER47B DNA MER2_type 96 277 -141 6 977 300 27 0 0 chr9 51454293 51454330 -72621842 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 977 271 74 18 36 chr9 51456218 51456274 -72619898 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 977 353 357 36 79 chr9 51457136 51457416 -72618756 + HAL1b LINE L1 704 971 -1038 6 977 309 317 15 45 chr9 51457575 51457707 -72618465 + L1MC5 LINE L1 6654 6781 -1180 6 977 2313 164 46 5 chr9 51458787 51459178 -72616994 - RLTR11A2 LTR ERVK -118 409 3 6 977 343 281 52 70 chr9 51459378 51459430 -72616742 + L1MC5 LINE L1 7032 7079 -882 6 977 3131 83 8 12 chr9 51459430 51459832 -72616340 + MTB LTR MaLR 1 400 0 6 977 343 281 52 70 chr9 51459832 51459951 -72616221 + L1MC5 LINE L1 7080 7200 -761 6 977 430 213 111 0 chr9 51460264 51460372 -72615800 + PB1 SINE Alu 6 125 -2 6 977 257 311 11 11 chr9 51460760 51460851 -72615321 + B1F SINE Alu 58 148 -1 6 977 186 138 0 0 chr9 51461343 51461372 -72614800 + MIRm SINE MIR 231 259 -17 6 977 351 0 0 0 chr9 51462792 51462831 -72613341 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 977 823 284 103 62 chr9 51462843 51462954 -72613218 - L1MA5A LINE L1 -386 5911 5801 7 977 581 166 236 25 chr9 51462954 51463115 -72613057 + B3A SINE B2 1 195 -3 7 977 823 292 101 56 chr9 51463115 51463678 -72612494 - L1MA5A LINE L1 -497 5800 5177 7 977 7081 67 1 2 chr9 51463677 51464568 -72611604 - L1_Mus1 LINE L1 0 6567 5678 7 977 357 311 50 40 chr9 51464569 51464770 -72611402 - L1MA5A LINE L1 -928 5215 5013 7 977 793 254 35 5 chr9 51464770 51464968 -72611204 - Lx6 LINE L1 0 7460 7257 7 977 547 240 31 55 chr9 51465608 51465771 -72610401 - Lx6 LINE L1 -140 7320 7162 7 977 386 298 52 64 chr9 51465771 51465792 -72610380 + B4 SINE B4 69 146 -146 7 977 852 127 0 23 chr9 51465792 51465921 -72610251 + B1_Mur4 SINE Alu 1 126 -24 7 977 386 298 52 64 chr9 51465921 51465943 -72610229 + B4 SINE B4 147 238 -54 7 977 4501 213 121 37 chr9 51465925 51466433 -72609739 - RMER12 LTR ERVK -209 1113 769 7 977 381 43 0 0 chr9 51466433 51466480 -72609692 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 7 977 4501 187 91 24 chr9 51466480 51467232 -72608940 - RMER12 LTR ERVK -554 768 2 7 977 1838 221 58 99 chr9 51467269 51467765 -72608407 - Lx6 LINE L1 -317 7143 6668 7 977 1099 263 77 12 chr9 51467763 51468160 -72608012 - L1MA5A LINE L1 -1126 5020 4590 7 977 474 18 0 0 chr9 51468219 51468274 -72607898 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 977 838 309 50 17 chr9 51468281 51468716 -72607456 - L1MA5A LINE L1 -1762 4118 3672 7 977 474 208 115 0 chr9 51469957 51470053 -72606119 - B1F SINE Alu -2 147 41 7 977 345 82 0 0 chr9 51470605 51470654 -72605518 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 977 477 0 0 0 chr9 51472457 51472510 -72603662 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 977 248 344 68 38 chr9 51473752 51473885 -72602287 - RMER13A LTR ERVK -70 790 654 7 977 219 103 0 0 chr9 51474018 51474057 -72602115 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 7 977 629 254 15 7 chr9 51474169 51474304 -72601868 - ID_B1 SINE B4 -7 217 82 7 977 7367 45 1 2 chr9 51475175 51476063 -72600109 + L1Md_F3 LINE L1 4700 5586 -297 7 977 8708 34 7 1 chr9 51476064 51477043 -72599129 + L1Md_F3 LINE L1 5588 6572 -12 7 977 841 257 59 51 chr9 51477063 51477419 -72598753 - RLTR10D LTR ERVK 0 359 1 7 977 223 291 8 68 chr9 51478152 51478270 -72597902 + MIR SINE MIR 87 197 -65 7 977 347 261 0 0 chr9 51479110 51479175 -72596997 + ID4 SINE ID 2 66 -17 7 977 245 314 0 37 chr9 51479282 51479391 -72596781 + (CATATA)n Simple_repeat Simple_repeat 2 106 0 7 977 249 57 0 0 chr9 51479509 51479544 -72596628 + (T)n Simple_repeat Simple_repeat 1 35 0 7 977 11345 47 12 1 chr9 51479641 51481727 -72594445 - L1Md_F2 LINE L1 -1 6581 4475 7 977 655 309 59 35 chr9 51482053 51482341 -72593831 - L1MA4 LINE L1 -373 5927 5633 7 977 213 269 39 0 chr9 51482518 51482570 -72593602 + MIR SINE MIR 117 170 -92 7 977 777 22 0 0 chr9 51483150 51483241 -72592931 + (TC)n Simple_repeat Simple_repeat 2 92 0 7 977 528 16 0 0 chr9 51484182 51484243 -72591929 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 977 333 0 0 0 chr9 51484703 51484740 -72591432 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 977 212 276 92 0 chr9 51484826 51484902 -72591270 - MIRc SINE MIR -184 84 2 7 977 2282 279 47 6 chr9 51484994 51485651 -72590521 - Lx8 LINE L1 0 7473 6790 7 977 755 303 78 21 chr9 51485808 51486000 -72590172 + B3A SINE B2 1 203 -13 7 977 341 340 30 71 chr9 51487916 51487940 -72588232 - ID_B1 SINE B4 -44 248 196 7 977 755 179 8 0 chr9 51487940 51488063 -72588109 - B1_Mus2 SINE Alu 0 147 24 7 977 341 340 30 71 chr9 51488063 51488128 -72588044 - ID_B1 SINE B4 -44 195 44 7 977 476 290 60 47 chr9 51488523 51488886 -72587286 - MLT1C LTR MaLR 0 467 57 7 977 667 306 84 58 chr9 51489133 51489480 -72586692 + ORR1E LTR MaLR 4 359 0 7 977 318 148 0 0 chr9 51489846 51489900 -72586272 + (A)n Simple_repeat Simple_repeat 1 54 0 7 977 824 201 7 0 chr9 51491126 51491265 -72584907 + B1_Mus1 SINE Alu 3 142 -6 7 977 929 163 4 25 chr9 51491265 51491541 -72584631 + GA-rich Low_complexity Low_complexity 1 269 0 7 977 285 182 0 0 chr9 51491544 51491599 -72584573 + G-rich Low_complexity Low_complexity 6 60 0 7 977 261 0 0 0 chr9 51491597 51491626 -72584546 + (TGG)n Simple_repeat Simple_repeat 2 30 0 7 977 499 240 115 19 chr9 51492368 51492532 -72583640 - B3 SINE B2 -21 172 2 7 977 2079 112 3 60 chr9 51492544 51492878 -72583294 + ORR1A2 LTR MaLR 5 319 -8 7 977 488 230 8 42 chr9 51493730 51493848 -72582324 + RSINE1 SINE B4 2 115 -50 7 977 310 254 71 28 chr9 51493897 51494022 -72582150 - MLT2B2 LTR ERVL -70 492 328 7 977 200 255 0 0 chr9 51496090 51496137 -72580035 - L2b LINE L2 0 3375 3329 7 977 1925 137 76 32 chr9 51496291 51496607 -72579565 + Lx3B LINE L1 6641 6970 -3 7 977 396 0 0 0 chr9 51496619 51496663 -72579509 + (TAA)n Simple_repeat Simple_repeat 2 45 0 7 977 604 267 52 109 chr9 51496729 51496939 -72579233 - B3A SINE B2 0 198 1 7 977 536 351 135 78 chr9 51497164 51497705 -72578467 - MLT1G LTR MaLR -4 575 4 7 977 708 261 5 104 chr9 51497867 51498089 -72578083 - B3 SINE B2 -15 201 2 7 977 23 0 0 0 chr9 51498094 51498117 -72578055 + AT_rich Low_complexity Low_complexity 1 23 0 7 977 1394 288 93 14 chr9 51498240 51498743 -72577429 - Lx8 LINE L1 -170 7303 6761 7 977 236 192 0 0 chr9 51498769 51498821 -72577351 + A-rich Low_complexity Low_complexity 1 52 0 7 977 1603 71 0 0 chr9 51499195 51499391 -72576781 - L1_Mm LINE L1 -195 5688 5493 7 977 1741 57 0 62 chr9 51499391 51499633 -72576539 + L1Md_F2 LINE L1 6356 6582 0 7 977 186 143 0 0 chr9 51499736 51499771 -72576401 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 977 767 92 0 0 chr9 51499902 51500000 -72576172 + B1_Mm SINE Alu 1 98 -49 7 977 324 43 0 0 chr9 51500002 51500049 -72576123 + B1_Mur4 SINE Alu 104 150 0 1 977 1024 295 23 72 chr9 51501665 51502056 -72574116 - MLT1B LTR MaLR -1 389 18 2 977 451 357 74 15 chr9 51502739 51503009 -72573163 - L2a LINE L2 -16 3410 3125 3 977 1607 239 115 17 chr9 51503077 51503545 -72572627 - RMER19C LTR ERVK 0 611 98 4 977 423 0 0 0 chr9 51503599 51503646 -72572526 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 977 788 228 48 38 chr9 51503710 51503920 -72572252 + B3 SINE B2 5 216 0 6 977 188 67 0 32 chr9 51503920 51503951 -72572221 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 7 977 217 330 144 70 chr9 51503997 51504212 -72571960 - L2a LINE L2 -377 3042 2812 3 977 347 323 31 0 chr9 51504524 51504620 -72571552 - RSINE1 SINE B4 0 165 67 8 977 553 158 24 33 chr9 51504917 51505257 -72570915 + (CA)n Simple_repeat Simple_repeat 1 336 0 9 977 25 0 0 0 chr9 51505827 51505852 -72570320 + AT_rich Low_complexity Low_complexity 1 25 0 1 977 398 232 24 0 chr9 51506056 51506138 -72570034 - B1F SINE Alu -5 144 61 1 977 1565 267 50 17 chr9 51506138 51506603 -72569569 - Lx8 LINE L1 -181 7292 6813 1 977 1442 253 92 18 chr9 51506832 51507290 -72568882 - Lx8 LINE L1 -664 6809 6318 1 977 558 192 23 0 chr9 51507369 51507499 -72568673 - Lx9 LINE L1 -7 7637 7505 1 977 259 268 129 35 chr9 51507950 51508066 -72568106 - MIRb SINE MIR -27 241 115 1 977 22 0 0 0 chr9 51508807 51508829 -72567343 + AT_rich Low_complexity Low_complexity 1 22 0 1 122 14499 45 2 0 chr9 51509277 51511866 -72564306 - L1Md_F2 LINE L1 -5 6577 3985 1 978 351 311 72 13 chr9 51511913 51512066 -72564106 - MLT1K LTR MaLR -33 562 401 1 978 213 400 78 5 chr9 51512416 51512622 -72563550 - L2b LINE L2 -163 3212 2992 1 978 335 291 71 16 chr9 51512750 51512932 -72563240 - L1MB2 LINE L1 -1 6170 5979 1 978 1086 67 7 0 chr9 51513156 51513291 -72562881 - B1_Mus1 SINE Alu -10 138 3 2 978 261 0 0 0 chr9 51513363 51513392 -72562780 + (T)n Simple_repeat Simple_repeat 1 29 0 2 978 28644 24 1 0 chr9 51513686 51517993 -72558179 - L1Md_T LINE L1 0 6582 2310 2 978 5990 50 0 0 chr9 51517993 51519245 -72556927 + L1Md_Gf LINE L1 739 2087 -3799 2 978 317 325 19 19 chr9 51519246 51519456 -72556716 - L1M3 LINE L1 -883 5257 5048 2 978 477 0 0 0 chr9 51519461 51519514 -72556658 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 978 441 0 0 0 chr9 51519514 51519562 -72556610 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 978 759 278 79 4 chr9 51519562 51519790 -72556382 - B4A SINE B4 -47 245 1 2 978 213 305 217 8 chr9 51519847 51519976 -72556196 - L2b LINE L2 -604 2815 2660 1 978 238 316 51 0 chr9 51520471 51520569 -72555603 - MIRb SINE MIR -39 229 127 2 978 510 96 0 0 chr9 51520571 51520644 -72555528 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 978 198 103 0 0 chr9 51520646 51520675 -72555497 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 3 978 203 336 70 35 chr9 51520798 51520940 -72555232 + L2b LINE L2 3080 3226 -149 3 978 580 390 136 38 chr9 51521639 51522170 -72554002 + MER115 DNA Tip100 109 691 -2 3 978 184 308 0 58 chr9 51522292 51522361 -72553811 + L2b LINE L2 3310 3374 -1 3 978 258 324 14 0 chr9 51522878 51522952 -72553220 + MIRb SINE MIR 35 109 -159 3 978 215 208 71 8 chr9 51523615 51523741 -72552431 + (TA)n Simple_repeat Simple_repeat 1 134 0 3 978 438 189 75 9 chr9 51523810 51523917 -72552255 - Lx7 LINE L1 0 7696 7583 3 978 257 324 0 44 chr9 51524617 51524730 -72551442 + RMER12 LTR ERVK 744 851 -471 3 978 232 315 156 12 chr9 51524964 51525143 -72551029 - MIRb SINE MIR 0 262 58 3 978 330 45 0 0 chr9 51525337 51525381 -72550791 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 978 453 90 0 0 chr9 51526883 51526950 -72549222 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 978 360 0 0 0 chr9 51526950 51526990 -72549182 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 978 182 380 28 9 chr9 51527420 51527529 -72548643 - MIRb SINE MIR -107 161 51 4 978 876 114 0 0 chr9 51527615 51527747 -72548425 - L1_Mur2 LINE L1 -210 5667 5536 4 978 830 99 24 0 chr9 51527751 51527890 -72548282 - Lx7 LINE L1 -1936 5760 5601 4 978 416 128 0 0 chr9 51527897 51527975 -72548197 - L1Md_F2 LINE L1 -3 6579 6502 4 978 3022 68 56 2 chr9 51527983 51528410 -72547762 + L1_Mus2 LINE L1 6015 6464 -102 4 978 2668 148 37 59 chr9 51528407 51528953 -72547219 - Lx7 LINE L1 -329 5548 5015 4 978 5773 163 39 22 chr9 51528964 51530022 -72546150 + Lx5 LINE L1 5972 7047 -3 4 978 276 295 64 0 chr9 51530074 51530152 -72546020 - L2a LINE L2 0 3426 3344 4 978 21 0 0 0 chr9 51530243 51530264 -72545908 + AT_rich Low_complexity Low_complexity 1 21 0 4 978 189 0 0 0 chr9 51531233 51531254 -72544918 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 978 201 74 0 0 chr9 51531419 51531446 -72544726 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 978 315 49 0 0 chr9 51531448 51531489 -72544683 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 978 402 21 0 0 chr9 51532460 51532507 -72543665 + (TGG)n Simple_repeat Simple_repeat 1 47 0 5 978 188 67 0 32 chr9 51533087 51533118 -72543054 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 978 268 286 0 0 chr9 51533211 51533288 -72542884 - ID4_ SINE ID -2 81 5 5 978 573 267 79 11 chr9 51533351 51533540 -72542632 - MER2 DNA MER2_type -119 226 25 5 978 256 257 41 14 chr9 51534326 51534409 -72541763 + BC1_Mm scRNA scRNA 5 89 -63 5 978 1024 265 95 54 chr9 51534594 51535129 -72541043 - Lx9 LINE L1 -6 7638 7082 5 978 194 326 43 50 chr9 51535673 51535812 -72540360 + L2a LINE L2 3284 3421 -5 5 978 191 261 22 0 chr9 51535818 51535864 -72540308 - MIRb SINE MIR -186 82 36 5 978 288 333 33 0 chr9 51537324 51537414 -72538758 + LTR16C LTR ERVL 383 475 -14 6 978 1191 147 11 11 chr9 51537591 51537777 -72538395 + MTC LTR MaLR 1 186 -235 6 978 913 98 0 14 chr9 51537789 51537934 -72538238 + (TA)n Simple_repeat Simple_repeat 1 143 0 6 978 297 235 71 0 chr9 51538050 51538135 -72538037 - Ricksha_0 DNA MuDR -9 1724 1634 6 978 220 276 184 0 chr9 51538317 51538393 -72537779 + B1F SINE Alu 4 93 -56 6 978 351 223 141 51 chr9 51538621 51538777 -72537395 - Ricksha_0 DNA MuDR -557 1176 1007 6 978 965 287 50 37 chr9 51538781 51539307 -72536865 - L1M2 LINE L1 -1528 4615 4053 6 978 483 18 0 0 chr9 51539752 51539808 -72536364 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 978 181 231 0 0 chr9 51539944 51539983 -72536189 - L2a LINE L2 0 3375 3337 6 978 413 352 82 32 chr9 51540024 51540366 -72535806 - L2a LINE L2 -126 3300 2942 6 978 308 337 210 33 chr9 51540412 51540835 -72535337 - L2a LINE L2 -619 2800 2303 6 978 333 177 81 0 chr9 51541308 51541370 -72534802 - B1F1 SINE Alu 0 149 83 6 978 405 313 126 16 chr9 51541357 51541539 -72534633 - MLT1D LTR MaLR -29 476 275 6 978 342 0 0 0 chr9 51541592 51541630 -72534542 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 978 322 198 116 0 chr9 51541631 51541717 -72534455 - MLT1D LTR MaLR -350 155 60 6 978 249 185 0 0 chr9 51541780 51541845 -72534327 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 978 455 299 56 106 chr9 51541850 51542153 -72534019 - B4A SINE B4 0 292 5 7 978 1170 239 26 142 chr9 51542240 51542636 -72533536 + MTE2a LTR MaLR 1 349 -30 7 978 261 0 0 0 chr9 51542636 51542665 -72533507 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 978 1170 239 26 142 chr9 51542665 51542697 -72533475 + MTE2a LTR MaLR 350 379 0 7 978 229 378 0 0 chr9 51543137 51543219 -72532953 + Tigger15a DNA TcMar 621 702 -13 7 978 285 29 0 0 chr9 51544126 51544160 -72532012 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 978 420 20 0 0 chr9 51545723 51545772 -72530400 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 978 721 224 102 127 chr9 51546016 51546279 -72529893 + RMER20B LTR ERVK 234 470 -157 7 978 276 30 0 0 chr9 51546279 51546312 -72529860 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 978 721 224 102 127 chr9 51546312 51546370 -72529802 + RMER20B LTR ERVK 471 546 -81 7 978 349 290 0 20 chr9 51546456 51546558 -72529614 + RMER20B LTR ERVK 504 603 -24 7 978 811 107 25 0 chr9 51547157 51547278 -72528894 + B1_Mus1 SINE Alu 25 148 0 8 978 235 245 68 102 chr9 51547178 51547296 -72528876 + B4A SINE B4 133 246 -46 8 978 621 210 0 0 chr9 51547296 51547434 -72528738 + GA-rich Low_complexity Low_complexity 3 140 0 8 978 215 170 0 21 chr9 51547775 51547823 -72528349 + (CAA)n Simple_repeat Simple_repeat 1 47 0 8 978 218 32 0 31 chr9 51548403 51548435 -72527737 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 8 978 190 0 0 62 chr9 51548687 51548719 -72527453 + (CACTA)n Simple_repeat Simple_repeat 3 32 0 8 978 187 337 121 0 chr9 51549669 51549752 -72526420 + L3 LINE CR1 2785 2877 -1612 8 978 2038 249 36 6 chr9 51550330 51550858 -72525314 - Lx7 LINE L1 -335 7361 6818 8 978 398 109 43 0 chr9 51551109 51551201 -72524971 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 8 978 697 86 35 35 chr9 51551234 51551403 -72524769 + (TAGA)n Simple_repeat Simple_repeat 3 171 0 8 978 198 0 0 0 chr9 51552474 51552496 -72523676 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 978 281 359 68 0 chr9 51552723 51552826 -72523346 + PB1D7 SINE Alu 6 115 -5 9 978 186 274 106 12 chr9 51553724 51553809 -72522363 + L3 LINE CR1 3831 3923 -566 9 978 199 339 131 82 chr9 51553987 51554231 -72521941 + MIRb SINE MIR 13 268 0 9 978 1610 193 107 18 chr9 51554816 51555153 -72521019 + RMER15 LTR ERVL 209 575 0 9 978 600 111 0 0 chr9 51555353 51555443 -72520729 + (TA)n Simple_repeat Simple_repeat 2 91 0 9 978 375 78 0 0 chr9 51555449 51555500 -72520672 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 978 269 162 62 86 chr9 51555969 51556050 -72520122 + Lx8 LINE L1 7393 7471 -2 9 978 2676 292 117 17 chr9 51556869 51557863 -72518309 - Lx8 LINE L1 -4 7469 6377 9 978 280 351 0 0 chr9 51558148 51558242 -72517930 + CT-rich Low_complexity Low_complexity 5 98 0 9 978 369 0 0 0 chr9 51559816 51559857 -72516315 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 978 295 274 73 28 chr9 51559876 51559967 -72516205 - RSINE1 SINE B4 -48 117 21 1 978 351 0 0 0 chr9 51559967 51560006 -72516166 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 978 295 274 73 28 chr9 51560006 51560023 -72516149 - RSINE1 SINE B4 -145 20 4 1 978 503 264 207 40 chr9 51560836 51561160 -72515012 - Lx9 LINE L1 -19 7625 7248 1 978 231 266 168 35 chr9 51562605 51562718 -72513454 + L1MCa LINE L1 1943 2070 -4438 1 978 246 271 0 0 chr9 51562831 51562890 -72513282 + PB1D10 SINE Alu 38 96 -21 1 978 2199 257 71 75 chr9 51562910 51563169 -72513003 + L1MCa LINE L1 2429 2669 -3652 1 978 240 35 0 0 chr9 51563169 51563198 -72512974 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1 978 2199 257 71 75 chr9 51563198 51563635 -72512537 + L1MCa LINE L1 2670 3099 -3222 1 978 1579 43 5 0 chr9 51563635 51563823 -72512349 + B2_Mm1t SINE B2 1 189 -4 1 978 3708 33 0 0 chr9 51563823 51564251 -72511921 + L1Md_T LINE L1 6154 6581 -1 1 978 2199 257 71 75 chr9 51564251 51564483 -72511689 + L1MCa LINE L1 3100 3354 -2967 1 978 1089 175 92 0 chr9 51564484 51564690 -72511482 - URR1A DNA MER1_type -1 225 1 1 978 1064 82 0 39 chr9 51564736 51564889 -72511283 + B1_Mus2 SINE Alu 1 147 0 1 978 277 194 155 45 chr9 51564994 51565102 -72511070 + L1MC2 LINE L1 6212 6320 -24 1 978 219 36 0 0 chr9 51565665 51565693 -72510479 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 978 514 322 35 60 chr9 51565727 51566011 -72510161 - B4A SINE B4 -14 278 2 1 978 1219 161 5 9 chr9 51567714 51567934 -72508238 + URR1B DNA MER1_type 7 225 0 1 978 373 175 30 20 chr9 51567934 51568033 -72508139 - L1M3 LINE L1 -501 5679 5580 1 978 685 162 149 0 chr9 51568242 51568390 -72507782 + Lx3C LINE L1 6805 6974 -2 1 978 207 100 0 0 chr9 51568404 51568434 -72507738 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 1 978 180 0 0 0 chr9 51569592 51569612 -72506560 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 978 279 0 0 0 chr9 51571961 51571992 -72504180 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 978 378 143 0 0 chr9 51572405 51572468 -72503704 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 1 978 250 208 0 0 chr9 51572549 51572597 -72503575 - AmnSINE1 SINE SINE -410 165 118 1 978 237 136 45 0 chr9 51573345 51573411 -72502761 + (CGGGG)n Simple_repeat Simple_repeat 5 73 0 1 978 270 219 0 0 chr9 51574801 51574865 -72501307 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 1 978 331 123 0 50 chr9 51574874 51574934 -72501238 - HAL1-3A_ME LINE L1 -840 2018 1962 1 978 234 0 0 0 chr9 51575109 51575135 -72501037 + (GGGGA)n Simple_repeat Simple_repeat 3 28 0 1 978 623 48 0 12 chr9 51575954 51576038 -72500134 + (TCTCCC)n Simple_repeat Simple_repeat 6 88 0 1 978 366 299 139 0 chr9 51576289 51576433 -72499739 - MER58A DNA MER1_type -1 223 60 1 978 535 258 0 86 chr9 51576442 51576616 -72499556 + RSINE1 SINE B4 2 160 -5 1 978 279 0 0 0 chr9 51576701 51576732 -72499440 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1 978 268 221 90 34 chr9 51576778 51576867 -72499305 + Charlie5 DNA MER1_type 17 110 -2514 1 978 498 275 101 75 chr9 51577431 51577615 -72498557 - L1M4 LINE L1 -403 5775 5587 1 978 191 61 30 0 chr9 51577615 51577648 -72498524 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 978 1218 29 0 0 chr9 51577651 51577791 -72498381 - B1_Mus2 SINE Alu -6 141 2 1 978 498 275 101 75 chr9 51577791 51577909 -72498263 - L1M4 LINE L1 -592 5586 5464 1 978 500 309 49 16 chr9 51579190 51579437 -72496735 - L1MD LINE L1 -769 5377 5123 1 978 266 0 29 0 chr9 51581000 51581034 -72495138 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 978 432 0 0 0 chr9 51581190 51581238 -72494934 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 978 553 281 65 65 chr9 51581257 51581504 -72494668 - B4A SINE B4 -45 247 1 1 978 276 30 0 0 chr9 51581800 51581833 -72494339 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 1 978 210 37 0 0 chr9 51582033 51582060 -72494112 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 978 2784 277 94 59 chr9 51584323 51585269 -72490903 + Lx8 LINE L1 6116 7038 -435 1 978 201 74 0 0 chr9 51585269 51585296 -72490876 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 978 2784 277 94 59 chr9 51585296 51585520 -72490652 + Lx8 LINE L1 7039 7327 -146 1 978 1969 208 31 45 chr9 51586316 51586824 -72489348 - RLTR20B3 LTR ERVK -56 521 21 1 978 981 288 132 25 chr9 51586835 51587582 -72488590 - L1MB7 LINE L1 -134 6050 5208 1 978 536 274 89 22 chr9 51587606 51587830 -72488342 - L1MB7 LINE L1 -1004 5142 4904 1 978 264 170 0 0 chr9 51587990 51588043 -72488129 + CT-rich Low_complexity Low_complexity 1 53 0 1 978 393 263 21 0 chr9 51588052 51588147 -72488025 - B1F SINE Alu -47 102 6 1 978 510 17 0 0 chr9 51588155 51588214 -72487958 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 978 441 0 0 0 chr9 51588214 51588262 -72487910 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 978 243 0 0 0 chr9 51589959 51589986 -72486186 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 978 180 0 0 0 chr9 51590062 51590082 -72486090 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 978 1194 61 7 0 chr9 51590084 51590231 -72485941 - B1_Mus1 SINE Alu 0 148 1 1 978 180 0 0 0 chr9 51590505 51590525 -72485647 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 978 4380 42 0 11 chr9 51591857 51592387 -72483785 + L1Md_F2 LINE L1 6045 6568 -14 1 978 969 155 200 33 chr9 51592544 51592784 -72483388 + Lx9 LINE L1 7363 7642 -2 1 978 951 227 19 5 chr9 51592962 51593170 -72483002 + B3 SINE B2 6 216 0 1 978 962 223 18 9 chr9 51593350 51593572 -72482600 + URR1A DNA MER1_type 1 224 -2 1 978 522 312 149 4 chr9 51594586 51594834 -72481338 - B4A SINE B4 0 292 9 1 978 21 0 0 0 chr9 51595316 51595337 -72480835 + AT_rich Low_complexity Low_complexity 1 21 0 1 978 304 259 298 22 chr9 51595648 51595920 -72480252 + MER20B DNA MER1_type 18 364 -419 1 978 225 0 0 0 chr9 51596378 51596403 -72479769 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 978 803 246 91 5 chr9 51596452 51596660 -72479512 - URR1A DNA MER1_type 0 226 1 1 978 189 0 0 0 chr9 51596675 51596696 -72479476 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 1 978 362 249 38 100 chr9 51598351 51598500 -72477672 + L1_Mur1 LINE L1 1509 1661 -4225 1 978 1119 150 67 10 chr9 51598500 51598709 -72477463 + URR1A DNA MER1_type 5 225 -1 1 978 362 245 36 105 chr9 51598709 51598810 -72477362 + L1_Mur1 LINE L1 1662 1746 -4140 1 978 180 0 0 0 chr9 51598824 51598844 -72477328 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 978 242 352 17 17 chr9 51598906 51599085 -72477087 + L1M2 LINE L1 2475 2653 -4196 1 978 268 352 0 0 chr9 51599240 51599348 -72476824 + L1M2 LINE L1 2832 2939 -3906 1 978 940 135 7 0 chr9 51599489 51599630 -72476542 - B1_Mus1 SINE Alu -2 146 5 1 978 493 333 27 65 chr9 51599635 51600245 -72475927 + L1M2 LINE L1 3090 3713 -3132 1 978 1141 96 0 22 chr9 51600737 51600918 -72475254 - B2_Mm2 SINE B2 -4 191 15 1 978 3312 53 2 0 chr9 51601040 51601439 -72474733 + MTB LTR MaLR 1 400 0 1 978 299 275 17 6 chr9 51601608 51601730 -72474442 + MIRc SINE MIR 26 155 -113 1 978 30 45 0 0 chr9 51601793 51601837 -72474335 + AT_rich Low_complexity Low_complexity 1 44 0 1 978 1242 66 32 11 chr9 51601926 51602111 -72474061 - B2_Mm2 SINE B2 -6 189 1 1 978 609 210 16 8 chr9 51602230 51602355 -72473817 - B1_Mur1 SINE Alu -18 131 6 1 978 1745 55 0 5 chr9 51602593 51602812 -72473360 + L1_Mus1 LINE L1 6350 6567 0 1 978 617 234 14 47 chr9 51603836 51603984 -72472188 + B1F2 SINE Alu 2 144 -5 1 978 611 108 0 8 chr9 51604002 51604123 -72472049 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 978 330 80 0 0 chr9 51604123 51604173 -72471999 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 978 250 276 17 0 chr9 51604316 51604374 -72471798 + C-rich Low_complexity Low_complexity 4 62 0 1 978 441 0 0 0 chr9 51604376 51604425 -72471747 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 978 627 256 183 42 chr9 51604480 51604720 -72471452 + B4A SINE B4 3 276 -16 1 978 423 38 0 0 chr9 51604759 51604812 -72471360 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 978 7890 74 20 12 chr9 51604881 51606257 -72469915 - L1_Mus3 LINE L1 -4 6634 5237 1 978 272 276 85 78 chr9 51606813 51607084 -72469088 - L1M5 LINE L1 -2599 3547 3275 1 978 247 288 89 32 chr9 51607222 51607440 -72468732 - L1MA10 LINE L1 -11 6323 5938 1 978 663 209 8 0 chr9 51607716 51607845 -72468327 + RSINE1 SINE B4 3 132 -33 1 978 312 27 0 0 chr9 51607872 51607909 -72468263 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 978 387 0 0 0 chr9 51607909 51607951 -72468221 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 978 527 276 132 19 chr9 51607969 51608235 -72467937 - L1MA10 LINE L1 -608 5571 5276 1 978 278 191 31 16 chr9 51608473 51608537 -72467635 - L1MC LINE L1 -960 5186 5122 1 978 29 60 0 0 chr9 51608560 51608610 -72467562 + AT_rich Low_complexity Low_complexity 1 50 0 1 978 264 338 83 33 chr9 51609073 51609315 -72466857 - L1MA10 LINE L1 -1774 4372 4119 1 978 591 271 80 65 chr9 51609414 51609816 -72466356 - L1MA10 LINE L1 -2218 3928 3521 1 978 229 240 213 0 chr9 51610935 51611010 -72465162 - MIRc SINE MIR -146 122 32 1 978 2247 137 53 1 chr9 51611025 51611416 -72464756 + MTC LTR MaLR 1 403 -18 1 978 1047 199 131 43 chr9 51611643 51611948 -72464224 - IAPEY3_LTR LTR ERVK 0 332 1 1 978 3322 21 29 0 chr9 51611966 51612351 -72463821 - MTA_Mm LTR MaLR 0 396 1 1 978 606 91 0 0 chr9 51613911 51614010 -72462162 + (TC)n Simple_repeat Simple_repeat 1 99 0 1 978 203 222 16 16 chr9 51614128 51614192 -72461980 + A-rich Low_complexity Low_complexity 4 67 0 1 978 201 114 0 43 chr9 51614412 51614458 -72461714 + A-rich Low_complexity Low_complexity 4 47 0 1 978 999 182 42 14 chr9 51614467 51614679 -72461493 - ORR1D1 LTR MaLR 0 374 157 1 978 295 348 78 27 chr9 51614750 51615007 -72461165 + Lx7 LINE L1 5592 5861 -1835 1 978 361 235 0 0 chr9 51615589 51615670 -72460502 + B3A SINE B2 1 81 -117 1 978 973 297 164 24 chr9 51615684 51616464 -72459708 - L1M3 LINE L1 -1477 4663 3775 1 978 301 235 17 42 chr9 51616479 51616599 -72459573 - Lx8 LINE L1 -3 7470 7354 1 978 439 241 109 25 chr9 51616678 51616797 -72459375 - B3A SINE B2 -69 129 1 2 978 499 147 20 0 chr9 51617127 51617229 -72458943 + (TA)n Simple_repeat Simple_repeat 2 105 0 2 978 622 272 91 26 chr9 51617240 51617470 -72458702 - Tigger7 DNA MER2_type -109 2382 2138 2 978 378 0 0 0 chr9 51617503 51617545 -72458627 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 978 306 0 0 0 chr9 51617545 51617578 -72458594 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 978 387 267 121 8 chr9 51617634 51617766 -72458406 - Tigger7 DNA MER2_type -2328 163 17 2 978 531 219 15 54 chr9 51618026 51618156 -72458016 + PB1 SINE Alu 1 125 -2 2 978 877 226 28 23 chr9 51618709 51618926 -72457246 + URR1B DNA MER1_type 1 218 -7 2 978 539 102 11 0 chr9 51619468 51619556 -72456616 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 2 978 198 0 0 0 chr9 51620099 51620121 -72456051 + (TC)n Simple_repeat Simple_repeat 2 23 0 2 978 423 0 0 0 chr9 51620121 51620167 -72456005 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 978 555 286 183 6 chr9 51620185 51620551 -72455621 + L1MB8 LINE L1 5528 5958 -220 2 978 615 285 23 125 chr9 51620672 51620977 -72455195 + B4A SINE B4 17 290 -2 2 978 360 229 0 0 chr9 51621287 51621357 -72454815 + ID4 SINE ID 3 72 -11 2 978 407 271 103 65 chr9 51622391 51622652 -72453520 - B4 SINE B4 -19 273 3 2 978 234 62 0 0 chr9 51623221 51623253 -72452919 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 2 978 189 0 0 0 chr9 51623454 51623475 -72452697 + (T)n Simple_repeat Simple_repeat 1 21 0 2 978 189 0 0 0 chr9 51623598 51623619 -72452553 + (T)n Simple_repeat Simple_repeat 1 21 0 2 978 325 60 0 0 chr9 51623652 51623702 -72452470 - L1Md_F3 LINE L1 -14 6570 6521 2 978 312 232 40 0 chr9 51624039 51624138 -72452034 - LTR55 LTR ERV -351 197 95 2 978 389 281 67 51 chr9 51624190 51624385 -72451787 + L1ME2z LINE L1 6007 6204 -240 2 978 186 118 0 0 chr9 51624544 51624578 -72451594 + (T)n Simple_repeat Simple_repeat 1 34 0 2 978 599 236 22 96 chr9 51625062 51625140 -72451032 - B3 SINE B2 -25 191 119 2 978 198 0 0 0 chr9 51625140 51625162 -72451010 + (CCA)n Simple_repeat Simple_repeat 2 23 0 2 978 599 236 22 96 chr9 51625162 51625261 -72450911 - B3 SINE B2 -98 118 27 2 978 7811 52 22 2 chr9 51625261 51626340 -72449832 - L1Md_F2 LINE L1 -2 6580 5480 2 978 2608 52 12 0 chr9 51626330 51626660 -72449512 + L1Md_F2 LINE L1 5134 5467 -416 2 978 227 214 0 0 chr9 51626673 51626715 -72449457 - B3 SINE B2 -174 42 1 2 978 272 283 123 0 chr9 51627051 51627157 -72449015 - MLT1F1 LTR MaLR -23 546 428 2 978 316 290 50 0 chr9 51630550 51630650 -72445522 + L1MD3 LINE L1 7451 7555 -440 2 978 465 180 0 0 chr9 51630674 51630763 -72445409 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 978 767 214 58 53 chr9 51631610 51631798 -72444374 + B3A SINE B2 1 189 -9 2 978 21 57 0 0 chr9 51632322 51632357 -72443815 + AT_rich Low_complexity Low_complexity 1 35 0 2 978 1196 61 0 0 chr9 51632389 51632537 -72443635 - B1_Mus1 SINE Alu 0 148 1 2 978 248 246 0 80 chr9 51635046 51635121 -72441051 - PB1D10 SINE Alu -8 109 41 2 978 567 262 21 0 chr9 51635902 51636043 -72440129 + RSINE1 SINE B4 3 146 -19 2 978 429 20 0 0 chr9 51636050 51636100 -72440072 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 978 485 177 67 75 chr9 51639146 51639280 -72436892 - B1F SINE Alu -11 138 6 2 978 330 265 48 96 chr9 51639280 51639313 -72436859 - B4A SINE B4 -76 216 58 2 122 672 262 250 38 chr9 51641995 51642495 -72433677 - Cheshire DNA MER1_type -14 2406 1801 2 979 393 206 0 0 chr9 51642582 51642650 -72433522 + PB1D10 SINE Alu 1 68 -49 2 979 958 147 0 26 chr9 51642666 51642820 -72433352 + B1_Mur4 SINE Alu 1 150 0 2 979 328 256 37 0 chr9 51643167 51643249 -72432923 + PB1D7 SINE Alu 36 120 0 2 979 874 140 238 6 chr9 51643604 51643776 -72432396 + B3 SINE B2 5 216 0 2 979 1398 99 0 5 chr9 51644768 51644961 -72431211 + B2_Mm2 SINE B2 2 193 -2 2 979 205 267 33 0 chr9 51646340 51646400 -72429772 + CT-rich Low_complexity Low_complexity 3 64 0 2 979 200 330 79 11 chr9 51647608 51647697 -72428475 - MIRb SINE MIR -36 232 138 2 979 315 209 81 0 chr9 51647829 51647915 -72428257 - L1MA8 LINE L1 -142 6149 6057 2 979 423 0 0 0 chr9 51651968 51652015 -72424157 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 979 364 274 38 0 chr9 51652016 51652122 -72424050 - RSINE1 SINE B4 -29 136 27 2 979 388 262 0 0 chr9 51652146 51652226 -72423946 - ID4 SINE ID -1 82 3 2 979 305 269 0 4 chr9 51652568 51652665 -72423507 + B1F SINE Alu 5 100 -20 2 979 1179 48 14 0 chr9 51652942 51653087 -72423085 + B1_Mm SINE Alu 1 147 0 2 979 378 0 0 0 chr9 51653549 51653591 -72422581 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 979 303 85 0 0 chr9 51654652 51654699 -72421473 + (A)n Simple_repeat Simple_repeat 1 47 0 2 979 336 234 0 94 chr9 51656387 51656472 -72419700 + RSINE1 SINE B4 50 126 -39 2 979 252 0 0 0 chr9 51661731 51661759 -72414413 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 979 32145 70 25 8 chr9 51662926 51668036 -72408136 + L1Md_F2 LINE L1 370 5586 -297 2 979 7733 58 21 8 chr9 51668036 51669019 -72407153 + L1Md_F2 LINE L1 5587 6582 0 2 979 327 25 0 0 chr9 51669059 51669099 -72407073 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 979 259 250 61 53 chr9 51669615 51669729 -72406443 + L1_Rod LINE L1 1796 1910 -3937 2 979 927 277 130 24 chr9 51670051 51671732 -72404440 + L1MA9 LINE L1 3881 5936 -376 2 979 270 136 0 0 chr9 51671792 51671836 -72404336 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 979 818 286 144 45 chr9 51671844 51672489 -72403683 + L1M2 LINE L1 4640 5348 -795 2 979 349 286 25 0 chr9 51672493 51672612 -72403560 + L1_Mur3 LINE L1 1557 1678 -4202 2 979 433 277 40 10 chr9 51672612 51672758 -72403414 + B3A SINE B2 49 202 -14 2 979 336 263 30 20 chr9 51672919 51673020 -72403152 - B4A SINE B4 -167 125 24 2 979 1139 90 0 0 chr9 51673086 51673230 -72402942 + B1_Mus2 SINE Alu 2 145 -2 2 979 351 0 0 0 chr9 51673230 51673269 -72402903 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 979 317 255 36 16 chr9 51676335 51676485 -72399687 + L1M5 LINE L1 5271 5426 -738 2 979 4396 241 63 37 chr9 51676487 51677702 -72398470 + Lx8 LINE L1 6221 7466 -7 2 979 348 253 235 26 chr9 51677725 51677989 -72398183 + L1M5 LINE L1 5413 5731 -433 2 979 785 186 32 37 chr9 51678026 51678216 -72397956 - ORR1D1 LTR MaLR -185 189 1 2 979 5276 191 64 64 chr9 51678216 51679578 -72396594 - ORR1D1-int LTR MaLR 0 1370 9 2 979 988 201 99 173 chr9 51679579 51679983 -72396189 - ORR1D1 LTR MaLR 0 374 1 2 979 21 0 0 0 chr9 51680243 51680264 -72395908 + AT_rich Low_complexity Low_complexity 1 21 0 2 979 190 339 46 0 chr9 51680264 51680329 -72395843 - L2a LINE L2 -17 3409 3342 2 979 428 286 143 0 chr9 51680368 51680494 -72395678 + Lx8 LINE L1 7034 7177 -296 2 979 592 279 114 82 chr9 51681279 51681646 -72394526 - MTEa LTR MaLR 0 379 1 2 979 204 200 88 71 chr9 51682547 51682660 -72393512 - L2b LINE L2 -2 3373 3259 2 979 370 338 19 6 chr9 51684003 51684161 -72392011 - MLT1A1 LTR MaLR -248 160 1 2 979 416 164 36 0 chr9 51685030 51685140 -72391032 + (TA)n Simple_repeat Simple_repeat 2 115 0 2 979 225 140 0 39 chr9 51685225 51685277 -72390895 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 2 979 287 257 87 19 chr9 51685281 51685384 -72390788 - ID_B1 SINE B4 -4 220 111 2 979 3004 60 44 0 chr9 51686249 51686632 -72389540 + MTB LTR MaLR 1 400 0 2 979 1885 135 3 25 chr9 51686632 51686958 -72389214 - ORR1A3 LTR MaLR -7 319 1 2 979 297 0 0 0 chr9 51687217 51687250 -72388922 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 979 413 315 43 86 chr9 51687274 51687576 -72388596 - B4 SINE B4 -3 289 1 2 979 272 254 0 0 chr9 51687707 51687766 -72388406 + ID4_ SINE ID 1 59 -24 2 979 227 227 15 0 chr9 51687827 51687893 -72388279 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 979 362 290 148 28 chr9 51688485 51688627 -72387545 + RSINE1 SINE B4 5 163 -2 2 979 440 164 9 0 chr9 51688686 51688796 -72387376 + (CATA)n Simple_repeat Simple_repeat 2 112 0 2 979 214 200 0 0 chr9 51690511 51690551 -72385621 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 979 344 322 34 0 chr9 51691343 51691461 -72384711 + MIRc SINE MIR 73 194 -74 2 979 1713 220 73 3 chr9 51692541 51692897 -72383275 + Lx9 LINE L1 6605 6985 -659 2 979 577 247 31 78 chr9 51692894 51693087 -72383085 + Lx9 LINE L1 7303 7486 -158 2 979 507 261 8 0 chr9 51693142 51693272 -72382900 + MTEa LTR MaLR 248 378 -1 2 979 318 112 67 33 chr9 51694296 51694416 -72381756 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 2 979 450 127 0 0 chr9 51694503 51694574 -72381598 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 979 704 292 22 0 chr9 51694594 51694772 -72381400 + B3A SINE B2 1 182 -16 2 979 536 0 16 0 chr9 51694808 51694872 -72381300 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2 979 1535 224 73 56 chr9 51695250 51695662 -72380510 - MTD LTR MaLR 0 419 1 2 979 780 280 70 0 chr9 51696158 51696358 -72379814 + B3 SINE B2 2 215 -1 2 979 800 200 196 22 chr9 51696882 51697066 -72379106 + B3 SINE B2 1 216 0 2 979 918 140 0 91 chr9 51697069 51697234 -72378938 + B1_Mur4 SINE Alu 1 150 0 2 979 216 0 0 0 chr9 51697237 51697261 -72378911 + (A)n Simple_repeat Simple_repeat 1 24 0 2 979 200 97 32 0 chr9 51697319 51697350 -72378822 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2 979 398 317 47 33 chr9 51698000 51698215 -72377957 + MIRb SINE MIR 26 243 -25 2 979 194 174 0 21 chr9 51698226 51698273 -72377899 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 2 979 1009 293 77 27 chr9 51698694 51699324 -72376848 - L1MA5 LINE L1 0 6300 5603 3 979 310 267 62 62 chr9 51699540 51699668 -72376504 - ID_B1 SINE B4 -4 220 93 3 979 524 276 101 75 chr9 51702178 51702456 -72373716 - ORR1D-int LTR MaLR -173 1197 913 3 979 4387 63 14 5 chr9 51702566 51703122 -72373050 - L1_Mus1 LINE L1 0 6567 6007 3 979 348 259 12 12 chr9 51703280 51703362 -72372810 + MT2A LTR ERVL 335 416 -117 3 979 282 169 0 0 chr9 51703719 51703784 -72372388 + T-rich Low_complexity Low_complexity 1 65 0 3 979 1192 88 0 0 chr9 51703787 51703935 -72372237 - B1_Mus1 SINE Alu 0 148 1 3 979 411 21 0 0 chr9 51704560 51704608 -72371564 + (TAG)n Simple_repeat Simple_repeat 3 50 0 3 979 279 0 0 0 chr9 51704608 51704639 -72371533 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 979 414 0 0 0 chr9 51704639 51704685 -72371487 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 979 587 229 82 0 chr9 51704708 51704825 -72371347 - B1_Mur2 SINE Alu -5 144 18 3 979 805 196 101 30 chr9 51704825 51705035 -72371137 + RLTR20C LTR ERVK 1 258 -270 3 979 669 180 0 0 chr9 51705035 51705163 -72371009 + G-rich Low_complexity Low_complexity 4 131 0 3 979 368 246 70 28 chr9 51705163 51705180 -72370992 + RLTR20A1 LTR ERVK 193 213 -350 3 979 185 0 0 39 chr9 51705180 51705206 -72370966 + (GAGAA)n Simple_repeat Simple_repeat 1 25 0 3 979 604 204 340 19 chr9 51705206 51705384 -72370788 + RLTR20A1 LTR ERVK 195 446 -105 3 979 360 0 0 0 chr9 51705384 51705424 -72370748 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 979 604 228 81 20 chr9 51705424 51705519 -72370653 + RLTR20A1 LTR ERVK 447 550 -1 3 979 499 233 35 0 chr9 51705544 51705660 -72370512 + B3A SINE B2 61 180 -18 3 979 2567 61 0 0 chr9 51705660 51705971 -72370201 - RLTR10E LTR ERVK 0 311 1 3 979 184 237 0 0 chr9 51706127 51706165 -72370007 - MIRm SINE MIR -121 155 118 3 979 212 279 8 90 chr9 51706792 51706914 -72369258 + MER5B DNA MER1_type 60 171 -7 3 979 1022 260 85 4 chr9 51709130 51709400 -72366772 - MTE2b LTR MaLR -87 292 1 3 979 212 241 0 0 chr9 51709765 51709819 -72366353 + CT-rich Low_complexity Low_complexity 1 54 0 3 979 4450 174 66 28 chr9 51709981 51710207 -72365965 - RLTR25B LTR ERVK 0 1028 815 3 979 243 0 0 0 chr9 51710207 51710234 -72365938 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 979 4450 174 66 28 chr9 51710234 51710998 -72365174 - RLTR25B LTR ERVK -214 814 3 3 979 498 241 47 20 chr9 51711053 51711201 -72364971 - RSINE1 SINE B4 -11 154 3 3 979 4797 208 142 50 chr9 51713032 51714212 -72361960 - Lx7 LINE L1 0 7696 6391 3 979 1131 56 14 0 chr9 51714212 51714356 -72361816 - B1_Mus2 SINE Alu 0 147 2 3 979 4797 208 142 50 chr9 51714356 51714435 -72361737 - Lx7 LINE L1 -1306 6390 6321 3 979 388 206 10 10 chr9 51714483 51714581 -72361591 - ORR1D2 LTR MaLR -272 98 1 3 979 232 281 58 12 chr9 51715542 51715695 -72360477 + MIRm SINE MIR 5 169 -99 3 979 668 238 258 60 chr9 51715719 51716068 -72360104 + MTD LTR MaLR 2 419 0 3 979 443 241 49 49 chr9 51716181 51716325 -72359847 - MTC LTR MaLR -151 270 127 3 979 1205 241 113 50 chr9 51716816 51717313 -72358859 + LTR55 LTR ERV 5 532 -16 3 979 184 242 43 43 chr9 51717559 51717628 -72358544 + MIRb SINE MIR 139 207 -61 3 979 28 29 0 0 chr9 51717779 51717814 -72358358 + AT_rich Low_complexity Low_complexity 1 35 0 3 979 7633 93 32 0 chr9 51717815 51719298 -72356874 - L1_Mus4 LINE L1 -6 6630 5108 3 979 1329 306 96 90 chr9 51719328 51720084 -72356088 + L1MB4 LINE L1 3333 4144 -2002 3 979 357 224 0 0 chr9 51720084 51720160 -72356012 + ID4 SINE ID 6 81 -2 3 979 1329 306 96 90 chr9 51720160 51720208 -72355964 + L1MB4 LINE L1 4145 4197 -1949 3 979 249 57 0 0 chr9 51720208 51720243 -72355929 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 979 1329 306 96 90 chr9 51720243 51720910 -72355262 + L1MB4 LINE L1 4198 4889 -1257 3 979 898 142 28 0 chr9 51720922 51721063 -72355109 + B1_Mur3 SINE Alu 5 149 0 3 979 324 280 80 0 chr9 51721206 51721306 -72354866 + PB1D10 SINE Alu 1 108 -9 3 979 564 304 59 78 chr9 51721360 51721784 -72354388 + L1MB4 LINE L1 4952 5367 -779 3 979 404 257 186 69 chr9 51721792 51722064 -72354108 + L1MB4 LINE L1 5859 6176 -7 3 979 333 217 24 12 chr9 51722155 51722239 -72353933 - RMER15 LTR ERVL -68 507 423 3 979 308 325 20 40 chr9 51722618 51722820 -72353352 - L2 LINE L2 -528 2891 2694 3 979 1194 167 17 79 chr9 51724263 51724504 -72351668 + URR1A DNA MER1_type 1 226 0 3 979 2751 155 5 2 chr9 51724889 51725309 -72350863 - MTC LTR MaLR 0 421 1 3 979 1855 96 3 75 chr9 51725552 51725845 -72350327 - Lx3_Mus LINE L1 -351 6658 6387 3 979 485 153 15 0 chr9 51725899 51726036 -72350136 + (CAGAGA)n Simple_repeat Simple_repeat 4 142 0 3 979 468 0 0 0 chr9 51726037 51726089 -72350083 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 979 807 265 9 42 chr9 51726089 51726302 -72349870 + ID_B1 SINE B4 19 224 0 3 979 595 236 35 84 chr9 51726414 51726617 -72349555 + B3A SINE B2 1 193 -5 3 979 837 228 63 14 chr9 51726798 51727020 -72349152 - MERVL_2A-int LTR ERVL -4461 1300 1068 3 979 230 206 68 14 chr9 51727157 51727231 -72348941 - L1MA10 LINE L1 0 6334 6257 3 979 368 178 89 45 chr9 51727468 51727580 -72348592 + MTE2a LTR MaLR 10 126 -293 3 979 534 244 68 53 chr9 51727604 51727794 -72348378 + MTE2a LTR MaLR 187 379 0 3 979 391 320 0 7 chr9 51728040 51728173 -72347999 - L1ME2 LINE L1 -507 5852 5724 3 979 3117 136 55 11 chr9 51728175 51728627 -72347545 + RLTR20D LTR ERVK 1 475 -93 3 979 324 0 0 0 chr9 51728627 51728663 -72347509 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 979 3117 136 55 11 chr9 51728663 51728754 -72347418 + RLTR20D LTR ERVK 476 567 -1 3 979 500 274 122 33 chr9 51728903 51729148 -72347024 - L1ME2 LINE L1 -640 5539 5273 3 979 552 30 0 0 chr9 51729278 51729344 -72346828 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 979 380 239 64 32 chr9 51729346 51729531 -72346641 - B3A SINE B2 -10 185 1 3 979 353 342 7 0 chr9 51729533 51729688 -72346484 - L1ME2 LINE L1 -1015 5131 4976 3 979 851 274 57 11 chr9 51729843 51730105 -72346067 + B4 SINE B4 4 277 -15 3 979 360 0 0 0 chr9 51730111 51730151 -72346021 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 979 268 236 168 62 chr9 51730339 51730548 -72345624 - L1ME2 LINE L1 -1294 4852 4622 3 979 386 257 46 0 chr9 51731173 51731282 -72344890 - PB1D9 SINE Alu -5 115 2 3 979 222 288 38 0 chr9 51731284 51731364 -72344808 + CT-rich Low_complexity Low_complexity 2 84 0 3 979 221 222 0 0 chr9 51731808 51731853 -72344319 + PB1D10 SINE Alu 28 72 -45 3 979 229 211 16 66 chr9 51732097 51732158 -72344014 + MLT1J2 LTR MaLR 69 126 -322 3 979 239 291 43 56 chr9 51733973 51734140 -72342032 + B4A SINE B4 1 159 -6 3 979 306 0 0 0 chr9 51734141 51734175 -72341997 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 979 387 0 0 0 chr9 51734175 51734217 -72341955 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 979 1461 29 0 0 chr9 51735140 51735314 -72340858 + (TG)n Simple_repeat Simple_repeat 2 175 0 3 979 751 271 101 12 chr9 51735317 51735564 -72340608 - B4A SINE B4 -22 270 2 3 979 976 231 15 0 chr9 51735603 51735802 -72340370 - B3 SINE B2 -14 202 1 3 979 186 283 139 20 chr9 51737629 51737730 -72338442 + L2a LINE L2 3161 3273 -153 3 979 222 242 0 0 chr9 51737739 51737805 -72338367 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 979 523 276 7 7 chr9 51737805 51737940 -72338232 - B3A SINE B2 -16 182 48 3 979 542 151 0 9 chr9 51738874 51738981 -72337191 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 979 324 315 68 0 chr9 51739456 51739602 -72336570 + MER102a DNA MER1_type 70 225 -105 3 979 257 51 0 25 chr9 51739954 51739994 -72336178 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 979 255 61 0 0 chr9 51740809 51740842 -72335330 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 979 926 228 5 0 chr9 51741059 51741248 -72334924 + B3 SINE B2 3 192 -24 3 979 282 116 0 0 chr9 51741250 51741293 -72334879 + (CAT)n Simple_repeat Simple_repeat 2 44 0 3 979 598 299 43 19 chr9 51741415 51741626 -72334546 + B3 SINE B2 1 216 0 3 979 203 328 45 0 chr9 51741910 51741977 -72334195 - L2a LINE L2 -8 3418 3349 3 979 1532 50 0 0 chr9 51742997 51743177 -72332995 - L1_Mus4 LINE L1 -366 6270 6091 3 979 380 86 0 0 chr9 51743178 51743236 -72332936 + RMER19C LTR ERVK 554 611 0 3 979 216 237 235 10 chr9 51743570 51743668 -72332504 + PB1D7 SINE Alu 1 120 0 3 979 272 248 118 96 chr9 51743956 51744228 -72331944 - LTR37B LTR ERV1 -51 417 140 3 979 5498 196 77 5 chr9 51744535 51745568 -72330604 + Lx6 LINE L1 6352 7459 -1 3 979 371 353 47 24 chr9 51745776 51745988 -72330184 + B4A SINE B4 49 265 -27 3 979 477 0 0 0 chr9 51746000 51746053 -72330119 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 979 185 296 181 16 chr9 51746142 51746269 -72329903 - L4 LINE RTE -1496 533 386 3 979 430 267 95 15 chr9 51746771 51746908 -72329264 + B1_Mur1 SINE Alu 1 148 -1 3 979 1346 171 4 19 chr9 51747539 51747796 -72328376 - RMER19B LTR ERVK -7 895 643 3 979 919 257 131 31 chr9 51748569 51748890 -72327282 + MTD LTR MaLR 53 405 -14 3 979 465 50 0 0 chr9 51749465 51749525 -72326647 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 979 1151 297 75 64 chr9 51749593 51749735 -72326437 - Lx8 LINE L1 0 7473 7339 3 979 806 170 166 27 chr9 51749735 51749922 -72326250 + B3 SINE B2 1 213 -3 3 979 1151 297 75 64 chr9 51749922 51750312 -72325860 - Lx8 LINE L1 -135 7338 6935 3 979 560 240 217 0 chr9 51751145 51751320 -72324852 - B3 SINE B2 0 216 4 3 979 22 80 0 0 chr9 51751584 51751634 -72324538 + AT_rich Low_complexity Low_complexity 1 50 0 3 979 428 252 64 16 chr9 51752148 51752273 -72323899 + ID_B1 SINE B4 85 215 -9 3 979 264 311 52 15 chr9 51752788 51752922 -72323250 + B1F SINE Alu 1 139 -10 3 979 367 250 25 0 chr9 51752940 51753020 -72323152 + ID4_ SINE ID 2 83 0 3 979 244 273 45 15 chr9 51753742 51753809 -72322363 + tRNA-Ala-GCY_ tRNA tRNA 3 71 -4 3 979 180 0 0 0 chr9 51753951 51753971 -72322201 + (A)n Simple_repeat Simple_repeat 1 20 0 3 979 248 70 23 0 chr9 51754061 51754104 -72322068 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 979 1743 98 11 0 chr9 51754419 51754684 -72321488 + RMER6B LTR ERVK 1 268 -193 4 979 302 83 143 48 chr9 51754684 51754747 -72321425 + RMER6B LTR ERVK 390 458 -3 4 979 585 277 120 31 chr9 51754790 51755187 -72320985 - RLTR15 LTR ERVK -18 341 33 4 979 1222 226 95 46 chr9 51755187 51755679 -72320493 + RLTR16 LTR ERVK 1 566 -2 4 979 657 307 0 12 chr9 51757365 51757530 -72318642 - RSINE1 SINE B4 0 165 3 4 979 511 226 15 0 chr9 51757711 51757844 -72318328 - RCHARR1 DNA MER1_type 0 974 840 4 979 246 156 0 0 chr9 51757849 51757894 -72318278 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 979 310 231 0 49 chr9 51758018 51758100 -72318072 + HAL1-3A_ME LINE L1 1972 2049 -809 4 979 2858 243 142 28 chr9 51758383 51759239 -72316933 + Lx8 LINE L1 6505 7458 -15 4 979 22 0 0 0 chr9 51759412 51759434 -72316738 + AT_rich Low_complexity Low_complexity 1 22 0 4 979 190 348 107 17 chr9 51760181 51760415 -72315757 - L2 LINE L2 -340 3079 2825 4 979 400 348 31 43 chr9 51760685 51760847 -72315325 + RSINE1 SINE B4 6 165 0 4 979 297 357 31 36 chr9 51760866 51761058 -72315114 - L2 LINE L2 -942 2477 2287 4 979 936 208 81 65 chr9 51761114 51761422 -72314750 + ORR1D2 LTR MaLR 58 370 0 4 979 294 292 83 12 chr9 51761427 51761568 -72314604 - MIR SINE MIR -68 200 51 4 979 510 262 131 0 chr9 51761783 51761928 -72314244 + ID_B1 SINE B4 25 188 -36 4 979 254 71 24 0 chr9 51761940 51761982 -72314190 + ORR1D2 LTR MaLR 328 370 0 4 979 192 111 0 0 chr9 51762206 51762242 -72313930 + (A)n Simple_repeat Simple_repeat 1 36 0 4 979 258 121 16 94 chr9 51762390 51762470 -72313702 + B1_Mur3 SINE Alu 79 149 0 4 979 386 261 202 54 chr9 51762473 51762898 -72313274 - L1M4 LINE L1 -5373 1169 682 4 979 227 330 96 8 chr9 51763359 51763523 -72312649 - MIR SINE MIR -82 186 7 4 979 210 283 0 0 chr9 51763575 51763621 -72312551 + B1F SINE Alu 1 46 -103 4 979 403 219 45 76 chr9 51763779 51763889 -72312283 + PB1D9 SINE Alu 12 141 -8 4 979 26 64 0 0 chr9 51763897 51763944 -72312228 + AT_rich Low_complexity Low_complexity 1 47 0 4 979 402 269 100 0 chr9 51763956 51764086 -72312086 + RCHARR1 DNA MER1_type 832 974 0 4 979 570 256 0 114 chr9 51764157 51764333 -72311839 + RSINE1 SINE B4 4 159 -6 4 979 502 244 68 58 chr9 51764830 51765021 -72311151 - B3A SINE B2 -5 193 1 4 979 408 301 98 0 chr9 51765356 51765499 -72310673 + RSINE1 SINE B4 3 159 -6 4 979 22 35 0 0 chr9 51766637 51766666 -72309506 + AT_rich Low_complexity Low_complexity 1 29 0 4 979 297 75 0 0 chr9 51767160 51767200 -72308972 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 979 691 234 27 126 chr9 51767544 51767837 -72308335 + RLTR11B LTR ERVK 22 285 -168 4 979 962 177 53 5 chr9 51768116 51768303 -72307869 + URR1A DNA MER1_type 31 226 0 4 979 833 255 58 0 chr9 51768555 51768763 -72307409 - ID_B1 SINE B4 0 224 5 4 979 1285 142 32 14 chr9 51769096 51769317 -72306855 - URR1B DNA MER1_type 0 225 1 4 979 260 355 102 5 chr9 51769783 51769970 -72306202 + MER3 DNA MER1_type 5 209 0 4 979 485 287 58 24 chr9 51770573 51770780 -72305392 + RMER5 LTR ERV1 321 534 0 4 979 781 237 25 15 chr9 51772521 51772718 -72303454 + B3 SINE B2 1 199 -17 4 979 479 266 19 68 chr9 51772744 51772950 -72303222 + B3A SINE B2 1 196 -2 4 979 252 310 11 33 chr9 51772969 51773059 -72303113 + B3 SINE B2 2 89 -127 4 980 757 201 201 0 chr9 51773856 51774020 -72302152 + B3 SINE B2 1 197 -19 4 980 472 216 96 0 chr9 51774030 51774155 -72302017 - L1MA6 LINE L1 -101 6199 6063 4 980 577 290 0 7 chr9 51774295 51774434 -72301738 + B3A SINE B2 5 142 -56 4 980 534 270 16 0 chr9 51774424 51774550 -72301622 - MLT1A1 LTR MaLR -66 342 215 4 980 1129 86 6 0 chr9 51774618 51774780 -72301392 - B2_Mm2 SINE B2 -32 163 1 4 980 582 54 0 0 chr9 51775337 51775411 -72300761 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 4 980 639 183 194 19 chr9 51775586 51775792 -72300380 + Lx5 LINE L1 5942 6183 -867 4 980 3374 171 25 5 chr9 51775788 51776341 -72299831 + Lx5 LINE L1 6348 6911 -139 4 980 2077 118 38 0 chr9 51776347 51776661 -72299511 + ORR1A2 LTR MaLR 2 327 0 4 980 9977 116 127 35 chr9 51776661 51778458 -72297714 + ORR1A2-int LTR MaLR 1 1963 0 4 980 2269 84 55 6 chr9 51778458 51778770 -72297402 + ORR1A2 LTR MaLR 1 327 0 4 980 467 188 98 0 chr9 51778798 51778910 -72297262 + Lx5 LINE L1 6926 7048 -2 4 980 324 0 0 0 chr9 51778915 51778951 -72297221 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 980 799 158 47 29 chr9 51779102 51779272 -72296900 + B2_Mm2 SINE B2 21 193 -2 4 980 5665 191 102 21 chr9 51779362 51780601 -72295571 - Lx9 LINE L1 0 7644 6306 4 980 5446 129 45 36 chr9 51780608 51781502 -72294670 - RMER19B LTR ERVK 0 902 1 4 980 309 164 0 0 chr9 51781502 51781557 -72294615 - ORR1C1 LTR MaLR -323 55 1 4 980 586 308 59 0 chr9 51781586 51781755 -72294417 - MTEa LTR MaLR -200 179 1 4 980 411 117 0 0 chr9 51782535 51782595 -72293577 - MTC LTR MaLR 0 421 362 4 980 22 35 0 0 chr9 51782604 51782633 -72293539 + AT_rich Low_complexity Low_complexity 1 29 0 4 980 265 344 118 49 chr9 51783128 51783663 -72292509 + L2a LINE L2 1886 2457 -962 4 980 369 0 0 0 chr9 51783674 51783715 -72292457 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 980 675 289 69 41 chr9 51783752 51783997 -72292175 - B4A SINE B4 0 292 41 4 980 1180 100 0 6 chr9 51784194 51784365 -72291807 - B2_Mm2 SINE B2 -23 172 3 4 980 185 289 161 15 chr9 51784409 51784546 -72291626 + L2a LINE L2 3089 3245 -181 4 980 312 271 40 30 chr9 51784890 51784989 -72291183 + RSINE1 SINE B4 44 143 -22 4 980 309 195 80 113 chr9 51785230 51785380 -72290792 + MLT1A0 LTR MaLR 33 177 -188 4 980 504 219 29 0 chr9 51785414 51785519 -72290653 - URR1B DNA MER1_type -116 109 2 4 980 322 269 188 23 chr9 51786028 51786161 -72290011 + RSINE1 SINE B4 5 159 -6 4 980 305 188 0 0 chr9 51786465 51786529 -72289643 + PB1D10 SINE Alu 48 111 -6 4 980 189 0 0 0 chr9 51786537 51786558 -72289614 + (GGAGA)n Simple_repeat Simple_repeat 5 25 0 4 980 1310 33 0 22 chr9 51786559 51786743 -72289429 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 980 395 322 8 8 chr9 51786943 51787062 -72289110 - MLT1A0 LTR MaLR 0 365 247 4 980 3457 136 60 32 chr9 51787076 51787694 -72288478 + RLTR17 LTR ERVK 1 635 -57 4 980 216 0 0 0 chr9 51787719 51787743 -72288429 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 980 259 321 0 0 chr9 51787796 51787877 -72288295 - ID4 SINE ID 0 83 3 4 980 333 314 7 116 chr9 51787878 51788033 -72288139 - MLT1A0 LTR MaLR -154 211 74 4 980 7661 68 2 2 chr9 51788041 51789001 -72287171 - L1_Mus3 LINE L1 -1 6637 5678 4 980 307 222 63 0 chr9 51789002 51789065 -72287107 - MLT1A0 LTR MaLR -280 85 19 4 980 321 235 55 62 chr9 51790277 51790422 -72285750 + ID_B1 SINE B4 76 219 -5 4 980 501 216 24 0 chr9 51790301 51790426 -72285746 + B1F1 SINE Alu 21 148 -1 4 980 923 70 0 8 chr9 51790432 51790561 -72285611 + (GA)n Simple_repeat Simple_repeat 2 129 0 4 980 303 309 0 67 chr9 51790666 51790770 -72285402 + PB1 SINE Alu 1 97 -30 4 980 471 195 24 0 chr9 51790773 51790855 -72285317 - B1_Mur4 SINE Alu -65 85 2 4 980 333 261 20 71 chr9 51790775 51790874 -72285298 - B4 SINE B4 -125 167 74 4 980 205 174 43 21 chr9 51790888 51790935 -72285237 + GA-rich Low_complexity Low_complexity 4 51 0 4 980 2644 83 0 3 chr9 51790963 51791313 -72284859 + L1Md_A LINE L1 5238 5586 -297 4 980 8758 27 0 0 chr9 51791313 51792309 -72283863 + L1Md_A LINE L1 5587 6582 0 4 980 7563 65 8 31 chr9 51792309 51793448 -72282724 + L1_Mus1 LINE L1 5452 6565 -2 4 980 414 305 58 0 chr9 51793490 51793644 -72282528 + RSINE1 SINE B4 3 165 0 4 980 230 56 28 0 chr9 51794318 51794354 -72281818 + (TCC)n Simple_repeat Simple_repeat 1 37 0 4 980 1084 94 56 50 chr9 51794393 51794572 -72281600 - B2_Mm2 SINE B2 -14 181 2 4 980 268 283 123 65 chr9 51794586 51794756 -72281416 + MLT1D LTR MaLR 1 180 -325 4 980 273 267 27 0 chr9 51794812 51794887 -72281285 + MLT1D LTR MaLR 278 354 -151 4 980 364 263 91 65 chr9 51794954 51795168 -72281004 + MTEa LTR MaLR 180 380 -39 4 980 319 281 42 0 chr9 51795183 51795279 -72280893 + MLT1D LTR MaLR 350 449 -56 4 980 424 277 136 18 chr9 51795297 51795466 -72280706 - B3A SINE B2 0 216 28 4 980 1047 228 99 14 chr9 51795922 51796216 -72279956 - ORR1D1 LTR MaLR -55 319 1 4 980 234 0 0 0 chr9 51796882 51796908 -72279264 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 980 1255 28 7 0 chr9 51797226 51797371 -72278801 + B1_Mm SINE Alu 1 146 -1 4 980 664 246 36 26 chr9 51797515 51797707 -72278465 + B3A SINE B2 1 194 -4 4 980 282 235 0 14 chr9 51797872 51797941 -72278231 - L1MA6 LINE L1 -232 6068 6001 4 980 695 210 27 81 chr9 51798067 51798290 -72277882 - B3 SINE B2 -2 214 4 4 980 391 306 26 18 chr9 51798507 51798620 -72277552 + PB1D7 SINE Alu 6 119 -1 4 980 331 282 58 44 chr9 51798780 51798917 -72277255 - ORR1E LTR MaLR -9 350 212 4 980 21 0 0 0 chr9 51799275 51799296 -72276876 + AT_rich Low_complexity Low_complexity 1 21 0 4 980 1006 233 85 64 chr9 51799351 51799681 -72276491 + Lx8 LINE L1 7047 7383 -90 4 980 22 0 0 0 chr9 51799717 51799739 -72276433 + AT_rich Low_complexity Low_complexity 1 22 0 4 980 1184 62 0 0 chr9 51800503 51800649 -72275523 + B1_Mus2 SINE Alu 2 147 0 4 980 300 154 0 0 chr9 51800661 51800713 -72275459 + GA-rich Low_complexity Low_complexity 2 53 0 4 980 1079 283 82 29 chr9 51800842 51801355 -72274817 + L1MB3 LINE L1 5594 6133 -50 4 980 994 141 42 32 chr9 51801526 51801702 -72274470 + B2_Mm2 SINE B2 2 180 -15 4 980 222 37 0 0 chr9 51801702 51801729 -72274443 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 5 980 994 141 42 32 chr9 51801729 51801742 -72274430 + B2_Mm2 SINE B2 181 193 -2 4 980 880 209 110 0 chr9 51801751 51801942 -72274230 - B3 SINE B2 -4 212 1 5 980 257 305 86 0 chr9 51802051 51802156 -72274016 - MIR SINE MIR -92 170 57 5 980 223 224 194 0 chr9 51802157 51802224 -72273948 - ID4_ SINE ID -1 82 3 5 980 195 100 0 0 chr9 51802688 51802718 -72273454 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 5 980 592 151 19 19 chr9 51802742 51802850 -72273322 - B1_Mus2 SINE Alu 0 147 40 5 980 243 226 0 0 chr9 51802850 51802903 -72273269 + (CCTG)n Simple_repeat Simple_repeat 2 54 0 5 980 248 179 0 35 chr9 51802908 51802966 -72273206 - B1_Mur4 SINE Alu -90 60 5 5 980 22 0 0 0 chr9 51802972 51802994 -72273178 + AT_rich Low_complexity Low_complexity 1 22 0 5 980 429 138 0 59 chr9 51803156 51803241 -72272931 - RSINE1 SINE B4 -83 82 3 5 980 339 215 25 0 chr9 51803785 51803864 -72272308 - L1MA6 LINE L1 -5 6295 6215 5 980 788 206 18 0 chr9 51803933 51804016 -72272156 + B4A SINE B4 2 87 -205 5 980 225 306 109 18 chr9 51804016 51804126 -72272046 + PB1D7 SINE Alu 1 120 0 5 980 1971 182 131 37 chr9 51804687 51805200 -72270972 - RLTR31_Mm LTR ERVK 0 561 1 5 980 4458 200 79 56 chr9 51805204 51806553 -72269619 - RMER3D-int LTR ERVK -4 2838 1287 5 980 1176 62 7 0 chr9 51806553 51806699 -72269473 - B1_Mus1 SINE Alu 0 148 2 5 980 4458 192 118 71 chr9 51806699 51807366 -72268806 - RMER3D-int LTR ERVK -1556 1286 556 5 980 1263 203 71 44 chr9 51807510 51807552 -72268620 + L1_Mm LINE L1 5169 5220 -920 5 980 2402 39 0 0 chr9 51807552 51807838 -72268334 - L1Md_A LINE L1 0 6582 6297 5 980 1263 115 5 19 chr9 51807838 51808037 -72268135 + L1_Mm LINE L1 5198 5396 -487 5 980 4723 38 2 0 chr9 51808070 51808624 -72267548 - L1Md_T LINE L1 0 6582 6028 5 980 181 0 0 65 chr9 51808825 51808856 -72267316 + (TAA)n Simple_repeat Simple_repeat 2 30 0 5 980 222 263 0 38 chr9 51809156 51809235 -72266937 + GA-rich Low_complexity Low_complexity 3 78 0 5 980 234 359 82 36 chr9 51809560 51809670 -72266502 + PB1D7 SINE Alu 5 119 -1 5 980 603 0 0 0 chr9 51809748 51809815 -72266357 + (TTTC)n Simple_repeat Simple_repeat 1 67 0 5 980 459 259 17 35 chr9 51809815 51809921 -72266251 - PB1D7 SINE Alu -13 107 3 5 980 261 0 91 0 chr9 51812033 51812077 -72264095 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 5 980 189 0 0 0 chr9 51812940 51812961 -72263211 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 980 773 286 31 30 chr9 51812972 51813345 -72262827 + L1_Mur3 LINE L1 4498 4845 -1035 5 980 285 182 0 0 chr9 51813507 51813562 -72262610 + CT-rich Low_complexity Low_complexity 4 58 0 5 980 201 264 22 44 chr9 51813579 51813670 -72262502 + CT-rich Low_complexity Low_complexity 2 90 0 5 980 1397 316 36 50 chr9 51813824 51814546 -72261626 + L1_Mur3 LINE L1 4841 5552 -328 5 980 240 111 0 0 chr9 51814549 51814585 -72261587 + (TTA)n Simple_repeat Simple_repeat 1 36 0 5 980 689 212 14 96 chr9 51814585 51814794 -72261378 - Lx2B LINE L1 -13 6987 6796 5 980 1023 218 10 0 chr9 51814838 51815040 -72261132 + B3 SINE B2 1 204 -12 5 980 729 276 0 10 chr9 51815107 51815301 -72260871 + L1_Rod LINE L1 5622 5813 -34 5 980 245 288 0 0 chr9 51815896 51815962 -72260210 + GA-rich Low_complexity Low_complexity 3 68 0 5 980 376 312 57 23 chr9 51816085 51816103 -72260069 - ORR1E LTR MaLR -171 188 171 5 980 842 99 0 8 chr9 51816103 51816235 -72259937 + (GA)n Simple_repeat Simple_repeat 2 132 0 5 980 376 312 57 23 chr9 51816235 51816393 -72259779 - ORR1E LTR MaLR -189 170 7 5 980 221 154 0 25 chr9 51816406 51816446 -72259726 + GA-rich Low_complexity Low_complexity 3 41 0 5 980 727 288 48 25 chr9 51816643 51817054 -72259118 + MLT2B1 LTR ERVL 2 517 -45 5 980 427 219 164 45 chr9 51817054 51817164 -72259008 - MER2 DNA MER2_type -1 344 222 5 980 483 280 68 8 chr9 51817203 51817336 -72258836 - RSINE1 SINE B4 -19 146 6 5 980 242 194 27 14 chr9 51817341 51817414 -72258758 - MER2 DNA MER2_type -111 234 161 5 980 342 0 0 0 chr9 51817452 51817490 -72258682 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 980 192 269 14 82 chr9 51817599 51817672 -72258500 + MIR SINE MIR 40 107 -101 5 980 513 271 108 0 chr9 51818449 51818615 -72257557 + B4A SINE B4 2 185 -107 5 980 206 118 0 0 chr9 51818616 51818650 -72257522 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 980 2107 43 0 8 chr9 51818968 51819227 -72256945 - L1Md_F2 LINE L1 0 6582 6326 5 980 203 167 0 0 chr9 51819423 51819465 -72256707 + T-rich Low_complexity Low_complexity 1 42 0 5 980 1210 61 0 0 chr9 51819465 51819613 -72256559 - B1_Mus1 SINE Alu 0 148 1 5 980 889 220 80 0 chr9 51819847 51820047 -72256125 + B3 SINE B2 1 216 0 5 980 200 59 0 29 chr9 51820200 51820235 -72255937 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 980 274 270 14 201 chr9 51820748 51820780 -72255392 + PB1D7 SINE Alu 3 30 -90 5 980 764 73 29 29 chr9 51820780 51820920 -72255252 - L1_Mus3 LINE L1 0 6638 6499 5 980 304 264 14 76 chr9 51820920 51821031 -72255141 + B1F SINE Alu 31 119 -1 5 980 445 239 26 26 chr9 51823092 51823208 -72252964 + PB1D10 SINE Alu 2 117 0 5 980 780 199 14 7 chr9 51823413 51823555 -72252617 + B1_Mur2 SINE Alu 2 144 -5 5 980 204 111 0 0 chr9 51823596 51823632 -72252540 + (T)n Simple_repeat Simple_repeat 1 36 0 5 980 5802 37 3 0 chr9 51823637 51824317 -72251855 - L1Md_T LINE L1 0 6582 5901 5 980 217 304 14 0 chr9 51824579 51824648 -72251524 + L2a LINE L2 1977 2046 -1373 5 980 186 347 13 0 chr9 51824857 51824932 -72251240 + L2a LINE L2 2399 2474 -945 5 980 186 370 0 20 chr9 51825401 51825503 -72250669 + L2a LINE L2 3056 3155 -271 5 980 290 75 38 0 chr9 51825549 51825602 -72250570 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 5 980 261 119 0 0 chr9 51826307 51826349 -72249823 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 980 423 244 116 0 chr9 51826557 51826696 -72249476 - B4A SINE B4 -2 290 137 5 980 693 239 31 0 chr9 51828852 51829015 -72247157 - ID_B1 SINE B4 -6 218 51 5 980 722 297 30 5 chr9 51829052 51829255 -72246917 - MLT1F LTR MaLR -173 375 168 5 980 303 298 21 0 chr9 51829428 51829522 -72246650 - PB1D10 SINE Alu -21 96 1 5 980 924 172 0 7 chr9 51829653 51829799 -72246373 + B1_Mus1 SINE Alu 2 146 -2 5 980 581 136 3 2 chr9 51829837 51829941 -72246231 - B1_Mus1 SINE Alu -6 114 10 5 980 5167 174 88 21 chr9 51829971 51830482 -72245690 - Lx9 LINE L1 -7 7637 7072 5 980 405 0 0 0 chr9 51830482 51830527 -72245645 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 980 5167 174 88 21 chr9 51830527 51831036 -72245136 - Lx9 LINE L1 -573 7071 6549 5 980 497 303 86 41 chr9 51831089 51831580 -72244592 + L1M4 LINE L1 3547 4057 -2089 5 980 349 301 19 10 chr9 51832088 51832192 -72243980 - PB1D10 SINE Alu -8 109 5 5 980 358 306 40 33 chr9 51832973 51833125 -72243047 - RMER15 LTR ERVL -68 507 355 5 980 216 0 0 0 chr9 51834373 51834397 -72241775 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 980 252 0 0 0 chr9 51834397 51834424 -72241748 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 980 1054 258 29 87 chr9 51834450 51834760 -72241412 - B4 SINE B4 0 292 1 5 980 21 0 0 0 chr9 51835164 51835185 -72240987 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 450 238 99 0 chr9 51837509 51837610 -72238562 - PB1D10 SINE Alu -6 111 1 5 980 953 132 49 49 chr9 51837782 51837800 -72238372 - B2_Mm2 SINE B2 -9 186 165 5 980 180 0 0 0 chr9 51837800 51837820 -72238352 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 980 953 132 49 49 chr9 51837820 51837984 -72238188 - B2_Mm2 SINE B2 -31 164 4 5 980 34 24 0 0 chr9 51838073 51838114 -72238058 + AT_rich Low_complexity Low_complexity 1 41 0 5 980 766 209 0 13 chr9 51838114 51838264 -72237908 + B1_Mur2 SINE Alu 2 149 0 5 980 29 47 0 0 chr9 51838267 51838310 -72237862 + AT_rich Low_complexity Low_complexity 1 43 0 5 980 576 286 129 50 chr9 51838310 51838830 -72237342 + L1M4 LINE L1 4400 4960 -1186 5 980 641 181 29 0 chr9 51839121 51839226 -72236946 - B3A SINE B2 -90 108 1 5 980 235 304 113 90 chr9 51841637 51841814 -72234358 - ORR1E LTR MaLR -112 247 67 5 980 625 375 66 52 chr9 51842170 51842670 -72233502 + LTR16E2 LTR ERVL 35 541 -27 5 980 667 224 149 39 chr9 51842729 51842910 -72233262 + B4 SINE B4 4 204 -88 5 980 210 294 0 98 chr9 51842846 51842948 -72233224 + B1_Mur2 SINE Alu 57 148 -1 5 980 234 182 0 0 chr9 51842972 51843016 -72233156 + GA-rich Low_complexity Low_complexity 4 47 0 5 980 624 169 0 0 chr9 51843018 51843196 -72232976 + (TAGGG)n Simple_repeat Simple_repeat 3 180 0 5 980 714 152 0 2 chr9 51843158 51843446 -72232726 + GA-rich Low_complexity Low_complexity 1 287 0 5 980 1059 94 0 0 chr9 51843446 51843626 -72232546 + (TAGGG)n Simple_repeat Simple_repeat 1 180 0 5 980 671 150 0 6 chr9 51843626 51843695 -72232477 + polypurine Low_complexity Low_complexity 109 177 0 5 980 699 156 0 0 chr9 51843702 51844025 -72232147 + GA-rich Low_complexity Low_complexity 1 323 0 5 980 576 172 0 0 chr9 51844042 51844216 -72231956 + GA-rich Low_complexity Low_complexity 5 178 0 5 980 480 111 0 0 chr9 51844236 51844326 -72231846 + (TTAGG)n Simple_repeat Simple_repeat 4 93 0 5 980 234 260 60 0 chr9 51844326 51844376 -72231796 + B4 SINE B4 228 280 -12 5 980 268 274 0 31 chr9 51844418 51844482 -72231690 + MLT1J LTR MaLR 56 117 -395 5 980 227 272 179 29 chr9 51844474 51844517 -72231655 + ID_B1 SINE B4 64 223 0 5 980 328 212 10 115 chr9 51844517 51844613 -72231559 + PB1D10 SINE Alu 32 117 0 5 980 220 217 17 0 chr9 51844614 51844674 -72231498 + (CAAA)n Simple_repeat Simple_repeat 1 61 0 5 980 31 26 0 0 chr9 51844738 51844776 -72231396 + AT_rich Low_complexity Low_complexity 1 38 0 5 980 285 265 36 85 chr9 51844844 51845009 -72231163 + RMER17D LTR ERVK 378 534 -355 5 980 2089 137 88 0 chr9 51845074 51845417 -72230755 - ORR1C2 LTR MaLR -11 373 1 5 980 5261 178 71 34 chr9 51846551 51847698 -72228474 - ORR1C2-int LTR MaLR -320 1189 1 5 980 1543 155 237 6 chr9 51847702 51848014 -72228158 - ORR1C2 LTR MaLR -8 386 3 5 980 475 269 33 25 chr9 51848020 51848142 -72228030 - MLT1A1 LTR MaLR -63 506 384 5 980 274 286 24 22 chr9 51848202 51848298 -72227874 + MTE2a LTR MaLR 279 366 -4 5 980 825 319 133 17 chr9 51848302 51848602 -72227570 - MLT1A1 LTR MaLR -40 368 34 5 980 934 235 10 25 chr9 51848754 51848955 -72227217 - B3A SINE B2 0 198 1 5 980 318 281 56 0 chr9 51850420 51850509 -72225663 - PB1D10 SINE Alu 0 117 24 6 980 886 281 62 70 chr9 51851414 51851541 -72224631 - MTEa LTR MaLR -33 346 225 6 980 931 178 220 5 chr9 51851541 51851727 -72224445 + URR1A DNA MER1_type 1 226 0 6 980 886 281 62 70 chr9 51851727 51851940 -72224232 - MTEa LTR MaLR -155 224 9 6 980 898 206 78 21 chr9 51852055 51852248 -72223924 - MTD LTR MaLR -213 206 3 6 980 2153 192 140 59 chr9 51852591 51853406 -72222766 - Lx7 LINE L1 -11 7449 6600 6 980 726 209 82 0 chr9 51853988 51854122 -72222050 - B1_Mus2 SINE Alu -2 145 1 6 980 384 314 54 68 chr9 51854757 51854962 -72221210 + MIRb SINE MIR 33 234 -34 6 980 26 30 0 0 chr9 51856063 51856096 -72220076 + GC_rich Low_complexity Low_complexity 1 33 0 6 980 21 36 0 0 chr9 51856631 51856659 -72219513 + GC_rich Low_complexity Low_complexity 1 28 0 6 980 21 0 0 0 chr9 51857349 51857370 -72218802 + AT_rich Low_complexity Low_complexity 1 21 0 6 980 25 31 0 0 chr9 51858919 51858951 -72217221 + AT_rich Low_complexity Low_complexity 1 32 0 6 980 2784 66 105 3 chr9 51859243 51859606 -72216566 + MTB LTR MaLR 1 400 0 6 980 606 173 127 52 chr9 51860008 51860142 -72216030 - B1_Mur2 SINE Alu 0 149 6 6 980 295 176 20 0 chr9 51860426 51860477 -72215695 + MER58A DNA MER1_type 21 72 -152 6 980 412 165 270 52 chr9 51860477 51860592 -72215580 + B1_Mus1 SINE Alu 2 141 -7 6 980 239 239 119 0 chr9 51860611 51860678 -72215494 + MER58A DNA MER1_type 61 135 -89 6 980 344 284 71 27 chr9 51860802 51860914 -72215258 + PB1D10 SINE Alu 1 117 0 6 980 231 260 0 0 chr9 51861709 51861759 -72214413 + MER58A DNA MER1_type 26 75 -149 6 980 381 247 23 23 chr9 51861754 51861841 -72214331 + MER58A DNA MER1_type 137 223 -1 6 980 24 0 0 0 chr9 51862070 51862094 -72214078 + AT_rich Low_complexity Low_complexity 1 24 0 6 980 247 208 21 0 chr9 51862290 51862338 -72213834 - RMER30 DNA MER1_type -151 51 3 6 980 1037 85 152 0 chr9 51862865 51863029 -72213143 - B2_Mm2 SINE B2 -6 189 1 6 980 22 0 0 0 chr9 51863149 51863171 -72213001 + AT_rich Low_complexity Low_complexity 1 22 0 6 980 21 36 0 0 chr9 51863253 51863281 -72212891 + AT_rich Low_complexity Low_complexity 1 28 0 6 980 450 0 0 0 chr9 51863685 51863735 -72212437 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 980 21 0 0 0 chr9 51863934 51863955 -72212217 + AT_rich Low_complexity Low_complexity 1 21 0 6 980 1319 72 48 6 chr9 51863985 51864153 -72212019 - B2_Mm2 SINE B2 -19 176 2 6 980 344 305 78 82 chr9 51864153 51864435 -72211737 + Charlie4a DNA MER1_type 227 507 -1 6 980 1485 49 53 11 chr9 51865584 51865771 -72210401 + B2_Mm2 SINE B2 1 195 0 6 980 720 244 21 20 chr9 51866096 51866277 -72209895 + B3A SINE B2 11 186 -9 6 980 651 248 18 65 chr9 51866352 51866520 -72209652 + B3A SINE B2 1 160 -38 6 980 300 53 0 0 chr9 51866533 51866571 -72209601 + (CACG)n Simple_repeat Simple_repeat 1 38 0 6 980 385 273 17 68 chr9 51866600 51866718 -72209454 + PB1D7 SINE Alu 1 112 -8 6 980 26 30 0 0 chr9 51868506 51868539 -72207633 + AT_rich Low_complexity Low_complexity 1 33 0 6 980 257 316 176 18 chr9 51869079 51869301 -72206871 + MIR SINE MIR 6 262 0 6 980 687 237 25 148 chr9 51869424 51869701 -72206471 + Lx5 LINE L1 6808 7050 0 6 980 605 285 16 43 chr9 51869739 51869926 -72206246 + B3A SINE B2 1 182 -16 6 980 858 248 194 0 chr9 51870058 51870300 -72205872 - Lx8 LINE L1 -102 7371 7083 6 980 180 0 0 0 chr9 51870516 51870536 -72205636 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 980 653 263 112 58 chr9 51870563 51871004 -72205168 - L1PB4 LINE L1 -230 5926 5392 6 980 316 240 25 51 chr9 51871168 51871247 -72204925 - RSINE1 SINE B4 -86 79 3 6 980 270 250 33 0 chr9 51871542 51871602 -72204570 + ID4 SINE ID 4 65 -18 6 980 189 74 0 0 chr9 51871795 51871822 -72204350 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 980 514 278 97 25 chr9 51871930 51872126 -72204046 - B4A SINE B4 -75 217 8 6 980 566 316 15 0 chr9 51872331 51872467 -72203705 + RSINE1 SINE B4 2 139 -26 6 980 1232 113 31 31 chr9 51873179 51873370 -72202802 - B2_Mm2 SINE B2 -2 193 3 6 980 336 363 41 75 chr9 51874694 51874840 -72201332 - B1F1 SINE Alu -8 141 1 6 980 546 126 11 0 chr9 51874923 51875010 -72201162 + BC1_Mm scRNA scRNA 1 88 -64 6 980 255 264 87 54 chr9 51875620 51875712 -72200460 + RSINE1 SINE B4 3 97 -68 6 980 186 43 0 0 chr9 51875989 51876012 -72200160 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 6 980 397 186 7 44 chr9 51879137 51879180 -72196992 + polypyrimidine Low_complexity Low_complexity 90 131 0 6 980 1149 123 0 0 chr9 51879180 51879359 -72196813 + (TC)n Simple_repeat Simple_repeat 1 179 0 6 980 397 186 7 44 chr9 51879359 51879419 -72196753 + polypyrimidine Low_complexity Low_complexity 32 89 0 6 980 1011 161 0 0 chr9 51879419 51879599 -72196573 + CT-rich Low_complexity Low_complexity 1 180 0 6 980 397 186 7 44 chr9 51879599 51879629 -72196543 + polypyrimidine Low_complexity Low_complexity 3 31 0 6 980 1103 110 43 0 chr9 51879651 51879814 -72196358 + B2_Mm2 SINE B2 2 171 -24 6 980 1483 74 0 59 chr9 51879814 51880016 -72196156 - B2_Mm2 SINE B2 -4 191 2 6 980 192 97 0 0 chr9 51880027 51880058 -72196114 + (TTTTTA)n Simple_repeat Simple_repeat 1 31 0 6 980 299 264 139 19 chr9 51880147 51880255 -72195917 - B3A SINE B2 -77 121 1 6 980 204 261 0 30 chr9 51881267 51881334 -72194838 + A-rich Low_complexity Low_complexity 5 69 0 6 980 298 249 82 44 chr9 51881932 51882051 -72194121 - B1F1 SINE Alu 0 127 3 6 980 682 331 86 8 chr9 51882062 51882330 -72193842 + B4 SINE B4 3 291 -1 6 980 238 262 32 32 chr9 51882715 51882778 -72193394 + ID4 SINE ID 15 77 -6 6 980 1239 48 0 20 chr9 51882819 51882969 -72193203 + B1_Mus2 SINE Alu 1 147 0 6 980 706 260 183 38 chr9 51884201 51885001 -72191171 - L1MB8 LINE L1 0 6178 5215 6 980 467 286 8 23 chr9 51885437 51885566 -72190606 - PB1 SINE Alu 0 127 1 6 980 23 0 0 0 chr9 51886143 51886166 -72190006 + AT_rich Low_complexity Low_complexity 1 23 0 6 980 23 68 0 0 chr9 51886278 51886322 -72189850 + AT_rich Low_complexity Low_complexity 1 44 0 6 980 1286 34 0 0 chr9 51887173 51887320 -72188852 - B1_Mus2 SINE Alu 0 147 1 6 980 327 304 71 38 chr9 51887418 51887630 -72188542 - L1MB2 LINE L1 -116 6055 5837 6 980 1152 191 18 0 chr9 51889597 51889817 -72186355 - URR1B DNA MER1_type 0 225 2 6 980 260 272 0 169 chr9 51890017 51890141 -72186031 - PB1D10 SINE Alu -9 108 6 6 980 1008 34 320 7 chr9 51891739 51891886 -72184286 + B2_Mm1a SINE B2 1 193 0 6 980 633 183 311 0 chr9 51891941 51892105 -72184067 + B3 SINE B2 2 216 0 6 980 333 68 0 0 chr9 51892473 51892517 -72183655 + (CATA)n Simple_repeat Simple_repeat 1 44 0 6 980 550 161 81 48 chr9 51894060 51894184 -72181988 + B3 SINE B2 2 129 -87 6 980 456 19 0 0 chr9 51894185 51894238 -72181934 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 980 23 0 0 0 chr9 51894392 51894415 -72181757 + AT_rich Low_complexity Low_complexity 1 23 0 6 980 204 40 0 0 chr9 51895129 51895154 -72181018 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 6 980 450 261 15 8 chr9 51897699 51897830 -72178342 + ID_B1 SINE B4 80 211 -13 6 980 435 119 0 0 chr9 51898597 51898664 -72177508 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 980 776 228 195 42 chr9 51899326 51899710 -72176462 - L1MB3 LINE L1 -43 6140 5698 6 980 261 170 37 26 chr9 51899727 51899812 -72176360 - L1M4 LINE L1 -663 5649 5566 6 980 298 196 18 88 chr9 51899828 51899934 -72176238 - B1F SINE Alu -46 103 1 6 980 425 325 30 0 chr9 51903504 51903673 -72172499 + Lx9 LINE L1 7316 7489 -155 6 980 536 227 36 0 chr9 51904382 51904492 -72171680 - PB1D7 SINE Alu -5 115 2 6 981 231 344 30 104 chr9 51904765 51904901 -72171271 + B1F2 SINE Alu 11 140 -9 6 981 305 279 51 14 chr9 51905134 51905272 -72170900 - L1_Rod LINE L1 -4487 1360 1218 6 981 226 155 52 0 chr9 51905278 51905336 -72170836 + CT-rich Low_complexity Low_complexity 3 63 0 6 981 771 238 17 6 chr9 51907966 51908139 -72168033 + ID_B1 SINE B4 2 176 -48 6 981 272 299 0 0 chr9 51908459 51908536 -72167636 - L3 LINE CR1 -466 4023 3947 6 981 1237 65 35 0 chr9 51909495 51909664 -72166508 - L1_Mus1 LINE L1 -1 6566 6392 6 981 216 0 0 0 chr9 51912314 51912338 -72163834 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 6 981 331 345 39 22 chr9 51913471 51913652 -72162520 - MER5A DNA MER1_type -2 187 4 6 981 2225 134 48 8 chr9 51914644 51915041 -72161131 + MTC LTR MaLR 1 413 -8 6 981 240 35 0 0 chr9 51918228 51918257 -72157915 + (CATA)n Simple_repeat Simple_repeat 2 30 0 6 981 480 328 60 16 chr9 51919418 51919601 -72156571 + MER58A DNA MER1_type 17 207 -17 6 981 34 0 0 0 chr9 51921791 51921825 -72154347 + AT_rich Low_complexity Low_complexity 1 34 0 6 981 26 0 0 0 chr9 51921896 51921922 -72154250 + AT_rich Low_complexity Low_complexity 1 26 0 6 981 22 0 0 0 chr9 51922927 51922949 -72153223 + AT_rich Low_complexity Low_complexity 1 22 0 6 981 289 167 16 16 chr9 51925198 51925259 -72150913 + 4.5SRNA scRNA scRNA 26 86 -8 6 981 803 36 0 9 chr9 51925206 51925318 -72150854 + B1_Mus2 SINE Alu 37 147 0 6 981 216 0 0 0 chr9 51925321 51925345 -72150827 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 981 1032 114 0 0 chr9 51925906 51926046 -72150126 + B1_Mus1 SINE Alu 1 140 -8 7 981 268 237 0 13 chr9 51926188 51926233 -72149939 + polypyrimidine Low_complexity Low_complexity 34 78 0 7 981 1146 75 0 0 chr9 51926233 51926380 -72149792 - B1_Mus1 SINE Alu 0 148 2 7 981 268 237 0 13 chr9 51926380 51926411 -72149761 + polypyrimidine Low_complexity Low_complexity 3 33 0 7 981 243 195 61 215 chr9 51926740 51926903 -72149269 + B1F SINE Alu 11 148 -1 7 981 221 254 0 87 chr9 51926914 51926983 -72149189 + ID4 SINE ID 4 66 -17 7 981 495 174 54 0 chr9 51927354 51927446 -72148726 - PB1D10 SINE Alu -8 109 13 7 981 210 296 42 0 chr9 51927397 51927468 -72148704 - B4A SINE B4 -146 146 73 7 981 977 185 46 0 chr9 51927549 51927744 -72148428 - B3 SINE B2 -11 205 2 7 981 267 31 0 0 chr9 51927955 51927987 -72148185 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 981 755 177 177 0 chr9 51928594 51928769 -72147403 - B3 SINE B2 -6 210 5 7 981 2201 95 40 3 chr9 51928913 51929239 -72146933 - Lx LINE L1 -8 6646 6309 7 981 236 193 35 17 chr9 51930651 51930709 -72145463 + (CATA)n Simple_repeat Simple_repeat 2 60 0 7 981 368 228 67 7 chr9 51930769 51930894 -72145278 + B4A SINE B4 2 144 -148 7 981 315 0 0 0 chr9 51931002 51931037 -72145135 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 981 258 32 0 0 chr9 51931341 51931372 -72144800 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 981 1038 196 70 0 chr9 51931379 51931593 -72144579 - MTD LTR MaLR -190 229 1 7 981 277 218 51 13 chr9 51931593 51931672 -72144500 - Tigger7 DNA MER2_type -175 2316 2235 7 981 315 279 26 18 chr9 51931675 51931788 -72144384 - Tigger7 DNA MER2_type -2032 459 346 7 981 438 329 28 112 chr9 51931806 51931954 -72144218 - Tigger7 DNA MER2_type -2261 230 102 7 981 530 138 0 60 chr9 51931954 51932070 -72144102 - L1Md_F3 LINE L1 0 6584 6476 7 981 438 329 28 112 chr9 51932070 51932171 -72144001 - Tigger7 DNA MER2_type -2390 101 2 7 981 1728 21 0 0 chr9 51932317 51932510 -72143662 - B2_Mm1t SINE B2 0 193 1 7 981 261 83 0 0 chr9 51932692 51932728 -72143444 + (TTTTC)n Simple_repeat Simple_repeat 3 38 0 7 981 1125 43 43 0 chr9 51932728 51932869 -72143303 - B1_Mus2 SINE Alu 0 147 1 7 981 244 286 102 71 chr9 51933187 51933481 -72142691 - RMER10A LTR ERVL -19 423 121 7 981 261 0 0 0 chr9 51933515 51933544 -72142628 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 981 200 176 0 0 chr9 51933738 51933772 -72142400 + CT-rich Low_complexity Low_complexity 4 37 0 7 981 306 0 0 0 chr9 51933952 51933986 -72142186 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 7 981 777 183 19 5 chr9 51934271 51934455 -72141717 + ORR1D1 LTR MaLR 4 185 -193 7 981 240 122 0 0 chr9 51935146 51935187 -72140985 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 981 685 164 14 0 chr9 51935439 51935579 -72140593 + CT-rich Low_complexity Low_complexity 3 144 0 7 981 222 169 0 122 chr9 51935972 51936012 -72140160 + A-rich Low_complexity Low_complexity 1 34 0 7 981 1143 64 14 0 chr9 51936012 51936153 -72140019 + B1_Mus1 SINE Alu 2 144 -4 7 981 222 169 0 122 chr9 51936153 51936186 -72139986 + A-rich Low_complexity Low_complexity 35 65 0 7 981 180 111 0 0 chr9 51936198 51936225 -72139947 + (A)n Simple_repeat Simple_repeat 1 27 0 7 981 952 252 81 16 chr9 51937100 51937407 -72138765 + L1M5 LINE L1 5336 5662 -578 7 981 1122 254 101 22 chr9 51937611 51938018 -72138154 + Lx8 LINE L1 6919 7357 -116 7 981 24 77 0 0 chr9 51939002 51939054 -72137118 + AT_rich Low_complexity Low_complexity 1 52 0 7 981 779 164 13 20 chr9 51940023 51940172 -72136000 - B1_Mur2 SINE Alu -1 148 1 7 981 380 192 27 0 chr9 51940786 51940859 -72135313 + ID SINE ID 9 83 -141 7 981 22 56 0 0 chr9 51942417 51942453 -72133719 + AT_rich Low_complexity Low_complexity 1 36 0 7 981 205 245 200 29 chr9 51942578 51942683 -72133489 + MIR SINE MIR 7 129 -133 7 981 1155 85 0 0 chr9 51942840 51943004 -72133168 - B2_Mm2 SINE B2 -31 164 1 7 981 294 179 0 0 chr9 51944317 51944373 -72131799 + GA-rich Low_complexity Low_complexity 1 56 0 7 981 1344 97 16 0 chr9 51944625 51944810 -72131362 - B2_Mm2 SINE B2 -6 189 2 7 981 539 233 162 7 chr9 51945137 51945414 -72130758 - MER33 DNA MER1_type -1 323 4 7 981 492 265 238 0 chr9 51946449 51946634 -72129538 + Charlie13a DNA Charlie 570 798 -716 7 981 25 51 0 0 chr9 51946791 51946830 -72129342 + AT_rich Low_complexity Low_complexity 1 39 0 7 981 596 316 70 29 chr9 51947646 51948031 -72128141 + Lx9 LINE L1 7239 7639 -5 7 981 231 254 159 0 chr9 51948399 51948462 -72127710 + ID2 SINE ID 1 73 -10 7 981 1149 179 47 0 chr9 51949239 51949451 -72126721 - URR1A DNA MER1_type 0 226 5 7 981 181 77 24 49 chr9 51949640 51949681 -72126491 + T-rich Low_complexity Low_complexity 1 40 0 7 981 37 23 0 0 chr9 51950250 51950294 -72125878 + AT_rich Low_complexity Low_complexity 1 44 0 7 981 271 158 0 38 chr9 51950310 51950389 -72125783 - Lx3A LINE L1 -18 6963 6888 7 981 226 282 37 49 chr9 51950419 51950501 -72125671 - ID4 SINE ID -1 82 2 7 981 286 288 166 18 chr9 51950727 51950890 -72125282 + MER33 DNA MER1_type 29 215 -109 7 981 28 29 0 0 chr9 51951194 51951229 -72124943 + AT_rich Low_complexity Low_complexity 1 35 0 7 981 249 108 0 0 chr9 51952767 51952804 -72123368 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 7 981 341 336 24 20 chr9 51953051 51953176 -72122996 + B1F SINE Alu 2 117 0 7 981 348 133 33 98 chr9 51958069 51958161 -72118011 + 4.5SRNA scRNA scRNA 1 86 -8 7 981 1052 71 0 0 chr9 51958079 51958219 -72117953 + B1_Mus2 SINE Alu 8 147 0 7 981 264 77 0 0 chr9 51958219 51958258 -72117914 + (A)n Simple_repeat Simple_repeat 1 39 0 7 981 183 100 0 0 chr9 51959400 51959430 -72116742 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 981 1490 57 5 5 chr9 51959454 51959647 -72116525 - B2_Mm1t SINE B2 0 193 1 7 981 541 239 26 0 chr9 51959649 51959762 -72116410 - RSINE1 SINE B4 -47 118 3 7 981 252 337 82 0 chr9 51961540 51961638 -72114534 + B1F2 SINE Alu 2 107 -42 7 981 268 281 125 0 chr9 51962071 51962167 -72114005 + PB1D7 SINE Alu 6 113 -7 7 981 21 36 0 0 chr9 51962237 51962265 -72113907 + AT_rich Low_complexity Low_complexity 1 28 0 7 981 2029 197 14 28 chr9 51962280 51962703 -72113469 + MTC LTR MaLR 5 421 0 7 981 5075 87 24 4 chr9 51963592 51964333 -72111839 + L1VL2 LINE L1 164 919 -5416 7 981 633 57 0 117 chr9 51964340 51964407 -72111765 - L1VL2 LINE L1 -5308 1027 970 7 981 450 0 0 0 chr9 51964407 51964457 -72111715 + (TTTTA)n Simple_repeat Simple_repeat 5 54 0 7 981 1220 54 0 0 chr9 51964459 51964606 -72111566 - B1_Mm SINE Alu 0 147 1 7 981 633 57 0 117 chr9 51964606 51964655 -72111517 - L1VL2 LINE L1 -5366 969 922 7 981 1767 100 1 50 chr9 51964647 51964959 -72111213 + L1M4 LINE L1 2361 2689 -3457 7 981 22 56 0 0 chr9 51965209 51965245 -72110927 + AT_rich Low_complexity Low_complexity 1 36 0 7 981 1211 62 0 0 chr9 51965580 51965726 -72110446 - B1_Mus2 SINE Alu -1 146 1 7 981 245 277 38 47 chr9 51965900 51966006 -72110166 - RMER12 LTR ERVK -471 851 747 7 981 294 50 0 0 chr9 51966250 51966290 -72109882 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 981 263 310 184 14 chr9 51966318 51966465 -72109707 + MIR SINE MIR 87 258 -4 7 981 194 262 62 47 chr9 51967106 51967170 -72109002 + MIR SINE MIR 169 233 -29 7 981 775 153 15 8 chr9 51967813 51967945 -72108227 + B1_Mur2 SINE Alu 3 135 -14 7 981 405 0 0 0 chr9 51968650 51968695 -72107477 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 981 1204 90 14 1 chr9 51968761 51968937 -72107235 - B2_Mm2 SINE B2 -2 196 3 7 981 4524 80 23 4 chr9 51969106 51970279 -72105893 + L1VL4 LINE L1 264 1467 -2092 7 981 1298 116 9 27 chr9 51970279 51970501 -72105671 + Lx2 LINE L1 6780 6997 0 7 981 4220 75 0 6 chr9 51970501 51970518 -72105654 + L1VL4 LINE L1 1468 1482 -2077 7 981 314 274 43 110 chr9 51970799 51970963 -72105209 - MIRc SINE MIR -110 158 6 7 981 530 258 132 42 chr9 51971106 51971272 -72104900 + B3A SINE B2 2 182 -16 7 981 480 217 8 8 chr9 51971400 51971530 -72104642 - L1M2 LINE L1 -2730 3413 3284 7 981 324 0 0 0 chr9 51972547 51972583 -72103589 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 981 498 282 65 0 chr9 51972584 51972708 -72103464 - RSINE1 SINE B4 -31 134 3 7 981 551 266 40 0 chr9 51973309 51973433 -72102739 - RSINE1 SINE B4 -12 153 25 7 981 221 0 35 0 chr9 51973499 51973528 -72102644 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 981 924 138 0 0 chr9 51973528 51973666 -72102506 - B1_Mus1 SINE Alu -9 139 2 7 981 654 188 31 15 chr9 51974879 51975009 -72101163 - B1_Mur1 SINE Alu 0 149 18 7 981 276 295 65 19 chr9 51975349 51975456 -72100716 - PB1D10 SINE Alu -5 112 1 7 981 243 311 62 80 chr9 51975456 51975489 -72100683 - B4A SINE B4 -202 90 60 7 981 26 57 0 41 chr9 51976647 51976720 -72099452 + GC_rich Low_complexity Low_complexity 1 70 0 7 981 224 262 16 0 chr9 51976823 51976884 -72099288 + (CCCG)n Simple_repeat Simple_repeat 2 63 0 7 981 208 340 115 55 chr9 51978687 51978905 -72097267 - MIR SINE MIR -2 260 30 7 981 274 163 0 20 chr9 51981721 51981732 -72094440 + ID SINE ID 72 81 -143 7 981 308 183 4 19 chr9 51981732 51981799 -72094373 + PB1D10 SINE Alu 1 63 -85 7 981 260 203 14 42 chr9 51981845 51981917 -72094255 + GA-rich Low_complexity Low_complexity 3 72 0 8 981 889 19 0 0 chr9 51981925 51982032 -72094140 + B1_Mm SINE Alu 40 146 -1 8 981 228 137 0 0 chr9 51982033 51982084 -72094088 + (A)n Simple_repeat Simple_repeat 1 51 0 8 981 795 227 174 9 chr9 51982206 51982556 -72093616 + L1MA8 LINE L1 5526 5932 -368 8 981 199 95 23 45 chr9 51982557 51982601 -72093571 + G-rich Low_complexity Low_complexity 2 44 0 8 981 207 0 0 0 chr9 51982991 51983014 -72093158 + (T)n Simple_repeat Simple_repeat 1 23 0 8 981 252 250 0 40 chr9 51983512 51983565 -72092607 + polypurine Low_complexity Low_complexity 3 53 0 8 981 270 0 0 0 chr9 51983565 51983595 -72092577 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 981 252 250 0 40 chr9 51983595 51983616 -72092556 + polypurine Low_complexity Low_complexity 54 74 0 8 981 296 352 0 0 chr9 51984023 51984111 -72092061 + ID_B1 SINE B4 81 168 -56 8 981 503 235 31 0 chr9 51984035 51984133 -72092039 + PB1D7 SINE Alu 12 112 -8 8 981 458 240 63 14 chr9 51984582 51984723 -72091449 - B4A SINE B4 -2 163 7 8 981 188 88 0 56 chr9 51984741 51984766 -72091406 + (TTTC)n Simple_repeat Simple_repeat 4 27 0 8 981 1009 136 0 11 chr9 51984766 51984945 -72091227 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 8 981 188 88 0 56 chr9 51984945 51984955 -72091217 + (TTTC)n Simple_repeat Simple_repeat 2 11 0 8 981 1110 58 0 7 chr9 51985609 51985748 -72090424 + B1_Mm SINE Alu 2 139 -8 8 981 438 69 0 0 chr9 51985748 51985806 -72090366 + (CTAA)n Simple_repeat Simple_repeat 3 60 0 8 981 198 0 0 0 chr9 51985806 51985827 -72090345 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 8 981 344 316 18 61 chr9 51986071 51986236 -72089936 + L2a LINE L2 3034 3191 -235 8 981 387 0 0 0 chr9 51986795 51986838 -72089334 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 981 243 0 0 0 chr9 51986922 51986949 -72089223 + (GCTG)n Simple_repeat Simple_repeat 3 29 0 8 981 463 271 33 0 chr9 51986950 51987072 -72089100 - B4 SINE B4 -137 155 30 8 981 241 15 121 0 chr9 51987161 51987227 -72088945 + (GCTG)n Simple_repeat Simple_repeat 4 77 0 8 981 602 192 6 0 chr9 51987385 51987546 -72088626 + GA-rich Low_complexity Low_complexity 1 162 0 8 981 181 284 69 69 chr9 51988317 51988404 -72087768 - L2 LINE L2 -925 2494 2408 8 981 236 281 172 42 chr9 51988513 51988751 -72087421 - ORR1E LTR MaLR -12 347 79 8 981 535 224 0 10 chr9 51990166 51990265 -72085907 + B1F SINE Alu 48 145 -4 8 981 217 286 143 0 chr9 51990269 51990339 -72085833 + ID2 SINE ID 3 82 -1 8 981 21 100 0 0 chr9 51990356 51990426 -72085746 + AT_rich Low_complexity Low_complexity 1 70 0 8 981 433 182 0 20 chr9 51990459 51990560 -72085612 + (TA)n Simple_repeat Simple_repeat 2 100 0 8 981 8095 26 1 0 chr9 51990695 51991789 -72084383 - L1Md_T LINE L1 0 6582 5488 8 981 1899 204 212 13 chr9 51992155 51992700 -72083472 + RMER19B LTR ERVK 66 902 0 8 981 22 0 0 0 chr9 51992718 51992740 -72083432 + AT_rich Low_complexity Low_complexity 1 22 0 8 981 1495 71 14 5 chr9 51992743 51992956 -72083216 - L1_Mus3 LINE L1 -1 6637 6423 8 981 1256 91 6 0 chr9 51992956 51993132 -72083040 - L1_Mus3 LINE L1 -405 6233 6057 8 981 4290 101 18 1 chr9 51993131 51993797 -72082375 + L1_Mm LINE L1 2081 2757 -3126 8 981 780 241 142 17 chr9 51995388 51995628 -72080544 + B4A SINE B4 3 272 -20 8 981 402 21 0 0 chr9 51995632 51995679 -72080493 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 981 222 37 0 0 chr9 51995852 51995879 -72080293 + (TAA)n Simple_repeat Simple_repeat 2 28 0 8 981 800 277 19 0 chr9 51996762 51996975 -72079197 - ID_B1 SINE B4 -6 218 2 8 981 384 279 9 1 chr9 51997009 51997127 -72079045 - MIRb SINE MIR -132 136 12 8 981 275 122 20 0 chr9 51997601 51997650 -72078522 + (CAT)n Simple_repeat Simple_repeat 2 51 0 8 981 1459 114 0 23 chr9 51997783 51997999 -72078173 + MTB_Mm LTR MaLR 1 211 -196 8 981 295 167 0 18 chr9 51998002 51998057 -72078115 + MTB_Mm LTR MaLR 366 419 0 8 981 192 364 198 0 chr9 51998699 51998820 -72077352 - L2b LINE L2 -28 3347 3203 8 981 332 342 26 20 chr9 51998860 51999012 -72077160 - MIRb SINE MIR -63 205 53 8 981 3878 17 0 0 chr9 51999530 52000000 -72076172 + L1Md_F3 LINE L1 5675 6144 -440 8 981 3390 42 33 2 chr9 52000000 52000427 -72075745 + L1Md_F3 LINE L1 6145 6584 0 1 981 26 30 0 0 chr9 52001168 52001201 -72074971 + AT_rich Low_complexity Low_complexity 1 33 0 2 981 239 360 89 29 chr9 52001327 52001573 -72074599 - L4 LINE RTE -561 1468 1208 3 981 733 233 31 82 chr9 52001944 52002201 -72073971 - ORR1E LTR MaLR 0 359 116 4 981 476 219 47 8 chr9 52002403 52002532 -72073640 - ORR1E LTR MaLR -225 134 1 4 981 3569 75 21 2 chr9 52003183 52003649 -72072523 - MT2C_Mm LTR ERVL 0 475 1 5 981 213 331 108 6 chr9 52004460 52004627 -72071545 - L4 LINE RTE -1223 806 623 3 981 23 54 0 0 chr9 52005390 52005427 -72070745 + AT_rich Low_complexity Low_complexity 1 37 0 6 981 246 198 66 55 chr9 52006180 52006271 -72069901 - MTEa LTR MaLR -8 371 280 7 981 371 262 26 90 chr9 52006425 52006580 -72069592 - B4A SINE B4 -147 145 1 8 981 28 29 0 0 chr9 52006730 52006765 -72069407 + AT_rich Low_complexity Low_complexity 1 35 0 9 981 587 112 10 0 chr9 52007307 52007405 -72068767 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 1 981 216 184 0 0 chr9 52009014 52009063 -72067109 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1 981 1307 68 51 11 chr9 52009637 52009815 -72066357 - B2_Mm2 SINE B2 -10 185 1 1 981 646 265 28 47 chr9 52009839 52010053 -72066119 - B3 SINE B2 -6 210 1 1 981 247 242 38 0 chr9 52010138 52010214 -72065958 + B1F SINE Alu 20 103 -46 1 981 234 161 16 97 chr9 52012325 52012387 -72063785 - ORR1E LTR MaLR -63 316 260 1 981 395 329 7 7 chr9 52012448 52012586 -72063586 - ORR1E LTR MaLR -217 142 5 1 981 200 359 26 0 chr9 52012590 52012668 -72063504 + L2a LINE L2 3011 3090 -285 1 981 1140 60 0 45 chr9 52012688 52012845 -72063327 + B1_Mur4 SINE Alu 1 150 0 1 981 357 105 23 11 chr9 52012847 52012934 -72063238 + (CAAA)n Simple_repeat Simple_repeat 2 89 0 1 981 225 316 0 38 chr9 52013027 52013106 -72063066 + L2a LINE L2 3336 3411 -15 1 981 5462 81 7 6 chr9 52013728 52014461 -72061711 + L1_Mus3 LINE L1 5898 6631 -7 1 981 357 24 0 0 chr9 52014464 52014506 -72061666 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 2 981 1031 52 82 0 chr9 52015292 52015427 -72060745 + B1_Mm SINE Alu 2 147 0 2 981 182 37 37 0 chr9 52015428 52015455 -72060717 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 981 2115 145 67 6 chr9 52015505 52015851 -72060321 + ORR1B2 LTR MaLR 1 367 0 2 981 424 288 114 59 chr9 52015923 52016196 -72059976 - L1MC4 LINE L1 -30 8012 7725 2 981 3122 68 2 12 chr9 52017689 52018089 -72058083 + MTA_Mm LTR MaLR 1 396 0 2 981 410 302 178 42 chr9 52018233 52019144 -72057028 - L1M4 LINE L1 -961 5185 4151 2 981 284 239 139 10 chr9 52019392 52019505 -72056667 - L1MB2 LINE L1 -174 6009 5884 2 981 264 59 0 0 chr9 52019518 52019552 -72056620 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2 981 1766 113 88 7 chr9 52019567 52019852 -72056320 - Lx4A LINE L1 -205 6853 6546 2 981 3467 122 15 9 chr9 52019851 52020380 -72055792 + Lx4A LINE L1 6023 6554 -504 2 981 1135 282 94 35 chr9 52020405 52020954 -72055218 - L1MB2 LINE L1 -2052 5830 5254 2 981 557 129 0 0 chr9 52020994 52021087 -72055085 - ORR1B2-int LTR MaLR -888 621 529 3 981 1259 164 109 11 chr9 52021079 52021345 -72054827 - ORR1B2 LTR MaLR -75 292 1 3 981 404 160 21 0 chr9 52021591 52021685 -72054487 + Lx4A LINE L1 6963 7058 0 3 981 1404 296 39 10 chr9 52022270 52022782 -72053390 - L1MC1 LINE L1 -104 6229 5703 3 981 325 354 104 25 chr9 52022954 52023281 -72052891 + L2 LINE L2 2265 2617 -802 3 981 415 284 75 84 chr9 52024558 52024866 -72051306 - MLT1M LTR MaLR -271 401 97 3 981 771 193 7 7 chr9 52025010 52025156 -72051016 + B1_Mus1 SINE Alu 3 148 0 3 981 191 32 65 0 chr9 52025198 52025229 -72050943 + (CAGAGA)n Simple_repeat Simple_repeat 3 35 0 3 981 222 277 44 88 chr9 52025237 52025328 -72050844 - B1F SINE Alu -62 87 1 3 981 207 0 0 0 chr9 52025336 52025359 -72050813 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 981 521 214 47 16 chr9 52025362 52025490 -72050682 - B1_Mur4 SINE Alu -6 144 13 3 981 545 122 0 43 chr9 52026587 52026606 -72049566 - BC1_Mm scRNA scRNA -60 92 77 4 981 324 0 0 0 chr9 52026606 52026642 -72049530 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 981 545 122 0 43 chr9 52026642 52026716 -72049456 - BC1_Mm scRNA scRNA -76 76 3 4 981 25 0 0 0 chr9 52026716 52026741 -72049431 + AT_rich Low_complexity Low_complexity 1 25 0 4 981 254 253 139 0 chr9 52026749 52026828 -72049344 + Lx9 LINE L1 5869 5958 -1686 4 981 450 318 19 49 chr9 52027701 52027906 -72048266 + MIRb SINE MIR 64 262 -6 4 981 574 279 6 32 chr9 52028129 52028335 -72047837 + MER2B DNA MER2_type 137 333 -3 4 981 3396 196 27 25 chr9 52028892 52029567 -72046605 - Lx5 LINE L1 0 7050 6375 4 981 296 294 156 77 chr9 52029827 52030206 -72045966 - L2 LINE L2 -790 2629 2221 4 981 705 278 105 12 chr9 52030924 52031172 -72045000 + B4 SINE B4 9 279 -13 4 981 556 207 370 26 chr9 52031195 52031457 -72044715 - MTD LTR MaLR -14 405 54 4 981 347 262 48 19 chr9 52031572 52031677 -72044495 + PB1D10 SINE Alu 9 116 -1 5 981 252 143 0 0 chr9 52031677 52031719 -72044453 + (CAG)n Simple_repeat Simple_repeat 1 42 0 5 981 197 229 42 0 chr9 52033697 52033745 -72042427 - MIRc SINE MIR -151 117 68 5 981 1920 160 101 3 chr9 52034780 52035156 -72041016 - MTC LTR MaLR -8 413 1 5 982 212 288 102 0 chr9 52037722 52037781 -72038391 + PB1D10 SINE Alu 36 100 -17 5 982 216 175 0 0 chr9 52037785 52037825 -72038347 + GA-rich Low_complexity Low_complexity 1 40 0 5 982 198 0 0 0 chr9 52038153 52038175 -72037997 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 5 982 202 156 0 22 chr9 52038740 52038786 -72037386 + MIR3 SINE MIR 125 169 -39 5 982 282 194 0 0 chr9 52039360 52039422 -72036750 + C-rich Low_complexity Low_complexity 5 66 0 5 982 1231 48 0 0 chr9 52040006 52040153 -72036019 - B1_Mus2 SINE Alu 0 147 1 5 982 21 71 0 0 chr9 52040205 52040247 -72035925 + AT_rich Low_complexity Low_complexity 1 42 0 6 982 729 186 8 0 chr9 52040259 52040388 -72035784 - B3 SINE B2 -86 130 1 6 982 3646 258 92 27 chr9 52040389 52041570 -72034602 - Lx8 LINE L1 -24 7449 6192 6 982 387 0 0 0 chr9 52042135 52042178 -72033994 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 982 301 321 9 19 chr9 52042423 52042531 -72033641 - PB1D7 SINE Alu -1 119 13 6 982 273 310 40 10 chr9 52042533 52042634 -72033538 + MIR SINE MIR 46 149 -113 6 982 238 290 30 61 chr9 52043163 52043262 -72032910 - MIR SINE MIR -13 249 154 6 982 234 330 11 32 chr9 52043694 52043788 -72032384 + MIR SINE MIR 50 141 -67 6 982 1287 264 50 26 chr9 52044461 52044832 -72031340 + MTE2b LTR MaLR 1 368 -2 6 982 289 263 41 21 chr9 52045170 52045267 -72030905 - MTEb LTR MaLR -29 350 252 6 982 2756 48 2 107 chr9 52045624 52045974 -72030198 + MTB LTR MaLR 1 343 -57 7 982 1843 67 107 65 chr9 52045974 52046264 -72029908 + L1_Mus2 LINE L1 6265 6566 0 7 982 1158 122 0 0 chr9 52046268 52046448 -72029724 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 982 2756 48 2 107 chr9 52046448 52046539 -72029633 + MTB LTR MaLR 344 400 0 7 982 25 51 0 0 chr9 52046568 52046607 -72029565 + AT_rich Low_complexity Low_complexity 1 39 0 7 982 246 207 163 14 chr9 52046805 52046952 -72029220 - L1MEc LINE L1 -5191 1209 1041 7 982 392 171 0 12 chr9 52047069 52047152 -72029020 + CT-rich Low_complexity Low_complexity 3 84 0 7 982 240 310 39 18 chr9 52047232 52047342 -72028830 - B1F1 SINE Alu -1 116 12 7 982 1842 188 13 41 chr9 52047412 52047801 -72028371 + ORR1C1 LTR MaLR 1 378 0 7 982 790 284 29 61 chr9 52048488 52048766 -72027406 + B4 SINE B4 3 271 -21 7 982 22 0 0 0 chr9 52049154 52049176 -72026996 + AT_rich Low_complexity Low_complexity 1 22 0 7 982 181 208 21 0 chr9 52049892 52049940 -72026232 + MIR SINE MIR 173 221 -41 8 982 888 156 0 0 chr9 52050027 52050207 -72025965 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 982 482 186 7 0 chr9 52050224 52050364 -72025808 + (CA)n Simple_repeat Simple_repeat 2 142 0 8 982 751 235 53 19 chr9 52051872 52052080 -72024092 - B3 SINE B2 -1 215 1 8 982 271 370 60 11 chr9 52052323 52052506 -72023666 + AmnSINE1 SINE SINE 5 196 -379 8 982 452 217 9 54 chr9 52052748 52052860 -72023312 - ID_B1 SINE B4 0 224 118 8 982 504 0 0 0 chr9 52053317 52053373 -72022799 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 8 982 212 86 0 28 chr9 52053387 52053423 -72022749 + (TCC)n Simple_repeat Simple_repeat 3 37 0 8 982 496 250 188 35 chr9 52053967 52054137 -72022035 + B3A SINE B2 1 196 -2 8 982 477 0 0 0 chr9 52054138 52054191 -72021981 + (TAA)n Simple_repeat Simple_repeat 3 55 0 8 982 426 292 17 0 chr9 52055129 52055249 -72020923 + Lx8 LINE L1 6381 6502 -971 8 982 217 143 19 75 chr9 52055286 52055392 -72020780 + A-rich Low_complexity Low_complexity 2 101 0 9 982 1964 281 72 59 chr9 52055429 52056257 -72019915 + Lx8 LINE L1 6635 7473 0 8 982 661 173 93 0 chr9 52058058 52058197 -72017975 + L1_Mus4 LINE L1 6481 6632 -4 9 982 875 297 101 16 chr9 52058266 52058590 -72017582 - ERVL-E-int LTR ERVL -3578 2183 1787 9 982 384 309 81 31 chr9 52058966 52059226 -72016946 - L2 LINE L2 -1280 2139 1867 9 982 266 310 0 0 chr9 52059462 52059533 -72016639 + (TG)n Simple_repeat Simple_repeat 2 72 0 9 982 736 222 245 30 chr9 52059541 52059778 -72016394 - B4A SINE B4 0 292 5 9 982 180 0 0 0 chr9 52061513 52061533 -72014639 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 9 982 306 247 0 12 chr9 52061651 52061737 -72014435 - ID_B1 SINE B4 -4 220 136 9 982 461 115 11 0 chr9 52061869 52061956 -72014216 + (GA)n Simple_repeat Simple_repeat 2 89 0 9 982 313 310 25 58 chr9 52062121 52062241 -72013931 + PB1D10 SINE Alu 2 117 0 9 982 365 194 50 34 chr9 52062588 52062702 -72013470 - PB1D7 SINE Alu -4 116 1 1 982 629 297 67 0 chr9 52063534 52063773 -72012399 - L1M3 LINE L1 -400 5783 5529 1 982 225 0 0 0 chr9 52064452 52064477 -72011695 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 982 33 56 0 0 chr9 52064657 52064711 -72011461 + AT_rich Low_complexity Low_complexity 1 54 0 1 982 201 280 0 0 chr9 52064807 52064882 -72011290 + A-rich Low_complexity Low_complexity 1 75 0 1 982 359 304 36 0 chr9 52064923 52065035 -72011137 - Lx7 LINE L1 -388 7308 7193 1 982 435 52 0 0 chr9 52065078 52065136 -72011036 + (TTCA)n Simple_repeat Simple_repeat 3 60 0 1 982 594 201 22 0 chr9 52065188 52065327 -72010845 - Lx6 LINE L1 -180 7280 7139 1 982 704 285 31 0 chr9 52065597 52065790 -72010382 - B4 SINE B4 -88 204 6 1 982 329 310 61 55 chr9 52065936 52066117 -72010055 + MTEa LTR MaLR 198 379 0 1 982 697 258 104 16 chr9 52068392 52068585 -72007587 - B3 SINE B2 -5 211 2 1 982 1102 278 11 15 chr9 52068725 52068992 -72007180 - B4 SINE B4 -19 273 8 1 982 24 32 0 0 chr9 52069010 52069041 -72007131 + AT_rich Low_complexity Low_complexity 1 31 0 1 982 507 360 39 39 chr9 52069301 52069639 -72006533 - MER46C DNA MER2_type 0 338 1 1 982 219 146 0 0 chr9 52069797 52069838 -72006334 + (T)n Simple_repeat Simple_repeat 1 41 0 1 982 198 0 0 0 chr9 52070614 52070636 -72005536 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 982 288 0 0 0 chr9 52070636 52070667 -72005505 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 982 320 59 20 0 chr9 52070869 52070920 -72005252 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 1 982 1179 14 7 14 chr9 52070922 52071068 -72005104 - B1_Mm SINE Alu -1 146 2 1 982 408 356 52 89 chr9 52071968 52072292 -72003880 + ORR1E LTR MaLR 1 312 -47 1 982 1005 302 96 35 chr9 52072296 52072786 -72003386 + MTE-int LTR MaLR 11 530 -1050 1 982 610 242 25 14 chr9 52072787 52072987 -72003185 + Lx7 LINE L1 5678 5909 -1787 1 982 2498 327 31 30 chr9 52073342 52074339 -72001833 + MTE-int LTR MaLR 543 1540 -40 1 982 398 301 14 22 chr9 52074508 52074647 -72001525 + MTE2a LTR MaLR 229 366 -13 1 982 1179 117 0 0 chr9 52075465 52075645 -72000527 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 982 211 338 45 26 chr9 52076090 52076245 -71999927 - MER5A DNA MER1_type -1 188 31 1 982 201 277 136 59 chr9 52076763 52076932 -71999240 + MIRb SINE MIR 28 209 -59 1 982 3617 66 6 17 chr9 52077171 52077651 -71998521 + MT2C_Mm LTR ERVL 1 475 0 1 982 203 204 41 0 chr9 52078483 52078532 -71997640 - L2 LINE L2 -1051 2368 2318 1 982 21 0 0 0 chr9 52078954 52078975 -71997197 + AT_rich Low_complexity Low_complexity 1 21 0 1 982 401 312 102 47 chr9 52082943 52083158 -71993014 - Tigger5 DNA MER2_type -2171 235 9 1 982 560 342 50 55 chr9 52083473 52083545 -71992627 - MLT1H-int LTR MaLR -164 1245 1171 1 982 234 0 0 0 chr9 52083545 52083571 -71992601 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 982 560 342 50 55 chr9 52083571 52083934 -71992238 - MLT1H-int LTR MaLR -239 1170 813 1 982 351 0 0 0 chr9 52083953 52083992 -71992180 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 982 308 378 8 0 chr9 52084136 52084255 -71991917 - B4 SINE B4 -168 124 5 1 982 706 264 55 50 chr9 52084268 52084693 -71991479 + L1MA5 LINE L1 5086 5523 -774 1 982 498 108 0 0 chr9 52084693 52084767 -71991405 + (GGA)n Simple_repeat Simple_repeat 1 74 0 1 982 378 273 96 20 chr9 52084871 52085017 -71991155 + L1MA5 LINE L1 6117 6273 -27 1 982 189 243 0 0 chr9 52085084 52085154 -71991018 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 982 303 96 0 0 chr9 52085155 52085207 -71990965 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 982 321 308 154 24 chr9 52085650 52085903 -71990269 - MLT1D LTR MaLR -127 378 93 1 982 547 271 0 16 chr9 52087475 52087916 -71988256 + (CA)n Simple_repeat Simple_repeat 1 433 0 1 982 632 310 63 21 chr9 52087939 52088176 -71987996 - Lx8 LINE L1 -145 7328 7082 1 982 189 171 0 0 chr9 52088243 52088278 -71987894 + CT-rich Low_complexity Low_complexity 1 35 0 1 982 421 275 146 51 chr9 52088687 52088940 -71987232 + B4 SINE B4 2 278 -14 1 982 646 142 39 4 chr9 52089456 52089696 -71986476 + (TG)n Simple_repeat Simple_repeat 1 248 0 1 982 382 135 28 19 chr9 52089717 52089823 -71986349 + (TG)n Simple_repeat Simple_repeat 2 108 0 1 982 269 290 182 49 chr9 52089901 52090104 -71986068 - RMER15 LTR ERVL -46 529 300 1 982 558 122 0 0 chr9 52091297 52091395 -71984777 + (TC)n Simple_repeat Simple_repeat 2 99 0 1 982 514 178 44 44 chr9 52091647 52091782 -71984390 + L1MDa LINE L1 21 155 -6478 1 982 491 141 0 11 chr9 52091782 52091875 -71984297 + CT-rich Low_complexity Low_complexity 4 95 0 1 982 1136 83 0 0 chr9 52092409 52092554 -71983618 + B1_Mus1 SINE Alu 4 148 0 1 982 1039 284 99 66 chr9 52092678 52092808 -71983364 + L1MDa LINE L1 1111 1237 -5396 1 982 981 114 70 23 chr9 52092808 52092979 -71983193 + B2_Mm2 SINE B2 2 180 -15 1 982 1039 284 99 66 chr9 52092979 52093631 -71982541 + L1MDa LINE L1 1238 1928 -4705 1 982 429 20 0 0 chr9 52093631 52093681 -71982491 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 982 1039 284 99 66 chr9 52093681 52093743 -71982429 + L1MDa LINE L1 1929 1984 -4649 1 982 397 269 40 20 chr9 52093772 52093920 -71982252 + L1MD1 LINE L1 6092 6242 0 1 982 2518 128 23 14 chr9 52094023 52094459 -71981713 - RMER21B LTR ERV1 0 842 403 1 982 964 144 168 0 chr9 52094434 52094636 -71981536 - RMER21B LTR ERV1 -606 236 1 1 982 261 189 38 0 chr9 52094714 52094767 -71981405 + L1MD2 LINE L1 6273 6327 -32 1 982 32 0 0 0 chr9 52094773 52094805 -71981367 + AT_rich Low_complexity Low_complexity 1 32 0 1 982 888 65 0 0 chr9 52094805 52094929 -71981243 - B1_Mus1 SINE Alu -23 125 2 1 982 323 23 23 0 chr9 52096648 52096692 -71979480 + (CAA)n Simple_repeat Simple_repeat 2 46 0 1 982 231 364 59 8 chr9 52096961 52097080 -71979092 - ORR1E LTR MaLR -210 149 25 1 982 233 304 52 35 chr9 52097104 52097220 -71978952 - MIR SINE MIR -35 227 110 1 982 189 0 0 0 chr9 52097527 52097548 -71978624 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 982 411 21 0 0 chr9 52097883 52097931 -71978241 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 982 753 232 0 0 chr9 52098478 52098616 -71977556 - B1_Mur3 SINE Alu -7 142 5 1 982 923 224 41 0 chr9 52098668 52098864 -71977308 - B3 SINE B2 -9 207 4 1 982 226 238 0 0 chr9 52099497 52099539 -71976633 + RMER1B Other Other 181 222 -844 1 982 264 44 0 117 chr9 52099547 52099624 -71976548 + G-rich Low_complexity Low_complexity 1 68 0 1 982 7878 56 4 8 chr9 52099655 52101286 -71974886 - L1Md_F2 LINE L1 0 6582 4958 1 982 1045 74 7 5 chr9 52101278 52101444 -71974728 + L1_Mm LINE L1 1751 1918 -1996 1 982 246 255 0 0 chr9 52101424 52101475 -71974697 + RMER1B Other Other 288 338 -728 1 982 414 292 10 96 chr9 52103661 52103858 -71972314 - MTEa LTR MaLR -183 196 17 1 982 21 0 0 0 chr9 52104095 52104116 -71972056 + AT_rich Low_complexity Low_complexity 1 21 0 1 982 528 231 110 14 chr9 52104438 52104583 -71971589 + B3 SINE B2 1 159 -57 1 982 292 72 57 14 chr9 52104584 52104654 -71971518 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 982 225 133 22 79 chr9 52105222 52105361 -71970811 + (TG)n Simple_repeat Simple_repeat 2 132 0 1 982 276 106 0 41 chr9 52105438 52105487 -71970685 - B3 SINE B2 -100 116 70 1 982 33 0 0 0 chr9 52105568 52105601 -71970571 + AT_rich Low_complexity Low_complexity 1 33 0 1 982 2664 63 0 0 chr9 52105601 52105934 -71970238 - L1Md_F2 LINE L1 -70 6512 6180 1 982 230 0 33 0 chr9 52107383 52107413 -71968759 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1 982 225 193 35 17 chr9 52107431 52107489 -71968683 - MIRc SINE MIR -124 144 86 1 982 252 304 115 53 chr9 52108550 52108776 -71967396 - L2c LINE L2 -47 3340 3101 1 982 262 244 214 13 chr9 52109654 52109808 -71966364 - MLT1N2 LTR MaLR 0 562 378 1 982 567 294 96 29 chr9 52110386 52110702 -71965470 + MLT1A0 LTR MaLR 8 374 0 1 982 276 206 0 100 chr9 52112478 52112548 -71963624 - B4A SINE B4 -2 290 228 1 982 266 147 27 68 chr9 52112553 52112582 -71963590 + polypyrimidine Low_complexity Low_complexity 45 71 0 1 982 597 304 25 0 chr9 52112582 52112740 -71963432 - RSINE1 SINE B4 -2 163 2 1 982 1267 20 6 44 chr9 52112748 52113073 -71963099 + (TTCC)n Simple_repeat Simple_repeat 1 312 0 1 982 266 147 27 68 chr9 52113073 52113102 -71963070 + polypyrimidine Low_complexity Low_complexity 7 37 0 1 982 863 141 6 33 chr9 52113103 52113286 -71962886 + CT-rich Low_complexity Low_complexity 3 180 0 1 982 321 89 0 0 chr9 52113305 52113350 -71962822 + (TCCCC)n Simple_repeat Simple_repeat 5 49 0 1 982 709 258 33 0 chr9 52113367 52113518 -71962654 - B4A SINE B4 -86 206 51 1 982 333 0 0 0 chr9 52113563 52113600 -71962572 + (TTA)n Simple_repeat Simple_repeat 1 37 0 1 982 4869 104 26 4 chr9 52113600 52114323 -71961849 - Lx2A LINE L1 -15 6993 6255 1 982 372 296 181 26 chr9 52115065 52115471 -71960701 + MLT1F1 LTR MaLR 78 555 -5 1 982 784 269 82 50 chr9 52115507 52115789 -71960383 + B4A SINE B4 2 292 0 1 982 387 0 0 0 chr9 52115814 52115857 -71960315 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 982 257 275 10 52 chr9 52115936 52116032 -71960140 - B3 SINE B2 -5 211 120 1 982 253 263 31 43 chr9 52116048 52116211 -71959961 + L1MA5A LINE L1 3066 3226 -2917 1 982 225 281 16 0 chr9 52116351 52116415 -71959757 + L1MA5A LINE L1 3611 3675 -2468 1 982 760 300 40 49 chr9 52116420 52116593 -71959579 + L1MA5A LINE L1 3802 3967 -2176 1 982 1363 70 16 0 chr9 52116593 52116778 -71959394 + B2_Mm2 SINE B2 1 188 -7 1 982 760 300 40 49 chr9 52116778 52117178 -71958994 + L1MA5A LINE L1 3968 4370 -1773 1 982 267 114 0 0 chr9 52117178 52117222 -71958950 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 1 982 674 260 25 78 chr9 52117250 52117650 -71958522 + L1MA5A LINE L1 4357 4735 -1408 1 982 250 163 33 55 chr9 52117786 52117877 -71958295 + A-rich Low_complexity Low_complexity 2 90 0 1 982 276 149 0 0 chr9 52117917 52117964 -71958208 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 982 881 85 124 0 chr9 52117965 52118094 -71958078 - B1_Mus1 SINE Alu -2 146 2 1 982 280 252 48 19 chr9 52118121 52118226 -71957946 + L1MA5A LINE L1 5790 5897 -400 1 982 742 283 85 21 chr9 52118639 52119014 -71957158 - L1MA8 LINE L1 -199 6092 5694 1 982 346 286 215 20 chr9 52119042 52119546 -71956626 + L1MC2 LINE L1 5258 5855 -478 2 982 363 232 86 23 chr9 52119550 52119678 -71956494 - L1MA8 LINE L1 -2386 5399 5264 1 982 896 245 39 23 chr9 52119697 52120006 -71956166 + L1MC1 LINE L1 5894 6207 -126 2 982 703 130 128 15 chr9 52120043 52120176 -71955996 + B1_Mus1 SINE Alu 1 148 0 2 982 782 21 10 0 chr9 52120179 52120275 -71955897 + (GA)n Simple_repeat Simple_repeat 2 98 0 2 982 286 259 101 7 chr9 52120325 52120473 -71955699 - L1MA8 LINE L1 -54 6237 6076 2 982 201 238 48 0 chr9 52121696 52121759 -71954413 + L2 LINE L2 2539 2604 -815 2 982 353 254 23 23 chr9 52122491 52122664 -71953508 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 2 982 280 200 46 28 chr9 52122690 52122798 -71953374 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 2 982 329 43 0 21 chr9 52122812 52122860 -71953312 + (TAA)n Simple_repeat Simple_repeat 2 48 0 2 982 224 200 0 0 chr9 52123357 52123397 -71952775 + G-rich Low_complexity Low_complexity 3 42 0 2 982 807 259 24 5 chr9 52123868 52124074 -71952098 + B3 SINE B2 1 210 -6 2 982 333 0 0 0 chr9 52124133 52124170 -71952002 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 982 495 96 0 0 chr9 52124781 52124864 -71951308 + (CAAG)n Simple_repeat Simple_repeat 1 83 0 2 982 414 234 26 78 chr9 52125019 52125031 -71951141 + MT2B LTR ERVL 150 155 -446 2 982 608 219 23 30 chr9 52125031 52125163 -71951009 + B1_Mus1 SINE Alu 1 131 -17 2 982 1732 253 24 53 chr9 52125166 52125376 -71950796 + Lx6 LINE L1 6966 7176 -284 2 982 681 76 0 0 chr9 52125376 52125468 -71950704 + (TCCCC)n Simple_repeat Simple_repeat 2 93 0 2 982 1732 253 24 53 chr9 52125468 52125767 -71950405 + Lx6 LINE L1 7177 7460 0 2 982 342 49 23 58 chr9 52125778 52125864 -71950308 + (CAAAAA)n Simple_repeat Simple_repeat 2 84 0 2 982 457 264 15 58 chr9 52125865 52126002 -71950170 + B4A SINE B4 162 292 0 2 982 293 0 27 0 chr9 52126144 52126181 -71949991 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 982 707 208 35 7 chr9 52126196 52126341 -71949831 - B1_Mur1 SINE Alu 0 149 1 2 982 23 0 0 0 chr9 52129713 52129736 -71946436 + AT_rich Low_complexity Low_complexity 1 23 0 2 982 1060 162 28 5 chr9 52129760 52129956 -71946216 + B2_Mm2 SINE B2 2 207 -9 2 982 969 111 69 48 chr9 52131961 52132150 -71944022 - B2_Mm2 SINE B2 -1 194 2 2 982 204 247 29 49 chr9 52132392 52132494 -71943678 + (TGGG)n Simple_repeat Simple_repeat 1 100 0 2 982 306 333 50 97 chr9 52132504 52132666 -71943506 - MLT1B LTR MaLR -4 386 229 2 982 1691 214 63 13 chr9 52132666 52133064 -71943108 - MTC LTR MaLR -1 420 3 2 982 306 333 50 97 chr9 52133064 52133303 -71942869 - MLT1B LTR MaLR -162 228 4 2 982 2329 214 137 63 chr9 52133345 52133371 -71942801 - RMER1C Other Other 0 1342 1323 2 982 1941 33 0 36 chr9 52133371 52133622 -71942550 - L1Md_F3 LINE L1 -2 6582 6341 2 982 2329 214 137 63 chr9 52133622 52133903 -71942269 - RMER1C Other Other -20 1322 1001 2 982 414 0 0 0 chr9 52133903 52133949 -71942223 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 982 2329 214 137 63 chr9 52133949 52134365 -71941807 - RMER1C Other Other -342 1000 565 2 982 345 291 78 0 chr9 52134572 52134675 -71941497 - RMER1B Other Other -913 153 43 2 982 190 274 0 16 chr9 52134774 52134837 -71941335 + MIRc SINE MIR 205 266 -2 2 982 869 159 6 0 chr9 52135642 52135805 -71940367 + CT-rich Low_complexity Low_complexity 2 165 0 2 982 2436 284 121 22 chr9 52136064 52137047 -71939125 + Lx6 LINE L1 6163 7451 -9 2 982 32 26 0 0 chr9 52138023 52138062 -71938110 + AT_rich Low_complexity Low_complexity 1 39 0 2 982 208 241 0 33 chr9 52138259 52138319 -71937853 + GA-rich Low_complexity Low_complexity 2 59 0 2 982 955 232 61 81 chr9 52138391 52138686 -71937486 + RMER20B LTR ERVK 68 356 -271 2 982 403 329 17 62 chr9 52139050 52139228 -71936944 + RMER20B LTR ERVK 347 516 0 2 982 334 236 93 9 chr9 52139529 52139636 -71936536 + L1M3 LINE L1 4841 4956 -1187 2 982 351 194 0 51 chr9 52139826 52139924 -71936248 + L1M3 LINE L1 5207 5299 -841 2 982 284 256 59 104 chr9 52139944 52140079 -71936093 + L1M1 LINE L1 5512 5640 -660 2 982 1500 301 49 40 chr9 52140991 52141689 -71934483 - Lx8 LINE L1 -2 7471 6768 2 982 749 289 149 34 chr9 52141701 52142253 -71933919 - L1ME2 LINE L1 -41 6123 5509 2 982 452 18 18 0 chr9 52142367 52142424 -71933748 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 982 250 333 32 32 chr9 52142429 52142522 -71933650 - PB1 SINE Alu -7 120 28 2 982 375 23 0 0 chr9 52142569 52142613 -71933559 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 982 552 325 62 11 chr9 52143712 52144070 -71932102 - L1MC1 LINE L1 -22 6311 5936 2 982 277 86 0 33 chr9 52144184 52144244 -71931928 + (TTTG)n Simple_repeat Simple_repeat 1 58 0 2 982 245 236 42 0 chr9 52144244 52144316 -71931856 - L1MC1 LINE L1 -502 5842 5768 2 982 228 345 0 11 chr9 52145021 52145112 -71931060 - LTR83 LTR ERVL -436 344 255 2 982 1042 297 104 27 chr9 52145678 52146371 -71929801 - L1MA7 LINE L1 -33 6258 5513 2 982 273 93 0 0 chr9 52146372 52146398 -71929774 + (T)n Simple_repeat Simple_repeat 1 26 0 2 982 1167 68 0 0 chr9 52146398 52146545 -71929627 - B1_Mm SINE Alu 0 147 1 2 982 273 93 0 0 chr9 52146545 52146561 -71929611 + (T)n Simple_repeat Simple_repeat 1 16 0 2 982 2711 65 8 0 chr9 52146569 52146924 -71929248 - L1_Mus2 LINE L1 -1 6565 6208 2 982 452 260 227 54 chr9 52147009 52147358 -71928814 - L1M2 LINE L1 -737 5441 5017 2 982 387 0 0 0 chr9 52147358 52147401 -71928771 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 982 452 222 174 54 chr9 52147401 52147516 -71928656 - L1M2 LINE L1 -1124 5016 4903 2 982 787 223 13 13 chr9 52147537 52147709 -71928463 - B3 SINE B2 -23 172 1 2 982 803 276 106 30 chr9 52147715 52148242 -71927930 - L1M2 LINE L1 -1224 4919 4353 2 982 1698 238 32 27 chr9 52148244 52148685 -71927487 - Lx6 LINE L1 -4 7456 7014 2 982 576 279 72 109 chr9 52148681 52149111 -71927061 - L1M2 LINE L1 -1793 4347 3934 2 982 363 154 0 0 chr9 52149485 52149550 -71926622 + (CCAA)n Simple_repeat Simple_repeat 2 66 0 2 982 212 103 0 49 chr9 52149629 52149670 -71926502 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 982 578 261 93 90 chr9 52151910 52152222 -71923950 - Lx8 LINE L1 -3 7470 7158 2 982 1915 292 107 22 chr9 52152682 52153586 -71922586 + Lx8 LINE L1 6490 7470 -3 2 982 568 363 147 21 chr9 52154256 52155034 -71921138 + L2a LINE L2 2539 3426 0 2 982 515 283 67 25 chr9 52155327 52155566 -71920606 - L1M2 LINE L1 -510 5781 5533 2 982 347 277 159 53 chr9 52155581 52155865 -71920307 + L1M2 LINE L1 4935 5252 -891 2 982 528 16 0 0 chr9 52155865 52155926 -71920246 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 982 470 243 105 35 chr9 52155926 52156177 -71919995 + L1M2 LINE L1 5253 5522 -790 2 982 243 0 0 0 chr9 52156177 52156204 -71919968 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 982 428 240 107 36 chr9 52156204 52156224 -71919948 + L1M2 LINE L1 5523 5544 -747 2 982 225 0 0 0 chr9 52158255 52158280 -71917892 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 982 517 324 106 62 chr9 52158312 52158585 -71917587 - B4A SINE B4 -5 287 3 2 982 385 346 103 24 chr9 52158689 52158902 -71917270 + LTR90B LTR LTR 34 263 -533 2 982 277 368 33 7 chr9 52159004 52159157 -71917015 - Charlie8 DNA MER1_type -2164 264 108 2 982 184 333 0 18 chr9 52159885 52159940 -71916232 + MIR SINE MIR 49 102 -106 2 982 652 226 8 0 chr9 52160471 52160604 -71915568 - B1_Mus1 SINE Alu -13 135 2 2 982 585 0 0 0 chr9 52160952 52161017 -71915155 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 982 598 290 80 3 chr9 52161500 52161801 -71914371 - L1MA5 LINE L1 -99 6201 5878 2 982 29 0 0 0 chr9 52163192 52163221 -71912951 + AT_rich Low_complexity Low_complexity 1 29 0 2 982 190 301 103 34 chr9 52163551 52163668 -71912504 + MIRc SINE MIR 11 135 -133 2 982 327 319 24 32 chr9 52163703 52163826 -71912346 - MIR SINE MIR -33 229 108 2 982 187 330 67 39 chr9 52164344 52164448 -71911724 - MIRm SINE MIR -118 158 52 2 982 235 258 194 39 chr9 52165785 52165914 -71910258 + MLT2F LTR ERVL 253 401 -262 2 982 243 125 0 0 chr9 52166252 52166292 -71909880 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 982 582 348 46 28 chr9 52166293 52166577 -71909595 - B4A SINE B4 -3 289 1 2 983 2736 138 34 14 chr9 52168071 52168484 -71907688 + MTC LTR MaLR 1 421 0 2 983 347 293 20 10 chr9 52168544 52168644 -71907528 + PB1D10 SINE Alu 1 101 -16 2 983 223 325 13 0 chr9 52168683 52168760 -71907412 + ID4 SINE ID 2 79 -4 2 983 309 381 10 67 chr9 52168989 52169197 -71906975 - MIRb SINE MIR -48 220 25 2 983 781 240 78 0 chr9 52169653 52169857 -71906315 + ID_B1 SINE B4 2 221 -3 2 983 7821 60 8 4 chr9 52170919 52172004 -71904168 - L1_Mus2 LINE L1 0 6566 5478 2 983 1012 339 53 24 chr9 52172151 52172526 -71903646 - MLT2B2 LTR ERVL -115 400 15 2 983 861 277 48 0 chr9 52173328 52173534 -71902638 + ID_B1 SINE B4 3 218 -6 2 983 266 295 47 9 chr9 52173535 52173641 -71902531 + MIR SINE MIR 142 251 -11 2 983 203 340 84 33 chr9 52173834 52173965 -71902207 + MIRc SINE MIR 46 179 -89 2 983 286 290 100 46 chr9 52175069 52175199 -71900973 - L3 LINE CR1 -4 4485 4349 2 983 297 289 11 67 chr9 52176712 52176801 -71899371 - ID SINE ID -136 88 5 2 983 793 257 19 29 chr9 52176843 52177051 -71899121 - ID_B1 SINE B4 -17 207 2 2 983 265 64 42 21 chr9 52177456 52177504 -71898668 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 2 983 201 74 0 0 chr9 52177865 52177892 -71898280 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 983 277 255 149 0 chr9 52177999 52178093 -71898079 + L1M2 LINE L1 4942 5049 -1094 2 983 501 84 0 0 chr9 52178477 52178548 -71897624 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 983 582 220 37 15 chr9 52178562 52178696 -71897476 - B3A SINE B2 -60 138 2 2 983 772 328 55 22 chr9 52178853 52179127 -71897045 + B4A SINE B4 4 286 -6 2 983 474 18 0 0 chr9 52179140 52179195 -71896977 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 983 1500 88 107 10 chr9 52179231 52179437 -71896735 - URR1A DNA MER1_type 0 226 1 2 983 199 339 68 45 chr9 52181239 52181372 -71894800 - MIRb SINE MIR -53 215 80 2 983 282 203 103 8 chr9 52181511 52181620 -71894552 - L1ME1 LINE L1 -227 5947 5823 3 983 474 287 20 0 chr9 52181621 52181722 -71894450 + RSINE1 SINE B4 2 104 -61 3 983 442 277 95 18 chr9 52181935 52182104 -71894068 - B3A SINE B2 -5 193 12 3 983 275 323 31 21 chr9 52182455 52182565 -71893607 - PB1D7 SINE Alu 0 120 1 3 983 295 290 70 19 chr9 52182860 52183018 -71893154 - L1MEc LINE L1 -6173 227 62 3 983 915 261 72 75 chr9 52183482 52183788 -71892384 + ORR1D2 LTR MaLR 1 305 -65 3 983 202 294 0 158 chr9 52185084 52185185 -71890987 - L2b LINE L2 0 3375 3291 3 983 1242 62 7 0 chr9 52185481 52185627 -71890545 + B1_Mm SINE Alu 1 147 0 3 983 323 73 18 0 chr9 52185629 52185684 -71890488 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 3 983 332 179 13 13 chr9 52186986 52187065 -71889107 + L1MA7 LINE L1 6072 6150 -141 3 983 231 164 121 52 chr9 52187344 52187402 -71888770 + MTEb LTR MaLR 302 363 -16 3 983 1047 69 0 3 chr9 52187781 52187921 -71888251 + L1Md_F2 LINE L1 5446 5586 -297 3 983 8736 40 3 2 chr9 52187921 52188915 -71887257 + L1Md_F2 LINE L1 5587 6581 -1 3 983 194 320 107 69 chr9 52188938 52189069 -71887103 + MIRb SINE MIR 61 196 -72 3 983 21601 41 0 0 chr9 52189466 52193440 -71882732 - L1Md_Gf LINE L1 -1959 3927 1 3 983 208 287 66 44 chr9 52193893 52193984 -71882188 - L4 LINE RTE -1325 704 612 3 983 23 0 0 0 chr9 52194356 52194379 -71881793 + AT_rich Low_complexity Low_complexity 1 23 0 3 983 254 93 0 18 chr9 52194487 52194542 -71881630 - L1Md_F2 LINE L1 0 6582 6529 3 983 841 238 16 26 chr9 52195140 52195158 -71881014 - B3A SINE B2 -3 195 181 3 983 435 38 0 0 chr9 52195158 52195211 -71880961 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 983 841 238 16 26 chr9 52195211 52195382 -71880790 - B3A SINE B2 -18 180 8 3 983 504 32 0 0 chr9 52196411 52196473 -71879699 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 3 983 7228 94 10 1 chr9 52196667 52198344 -71877828 + L1_Mus3 LINE L1 4833 6520 -118 3 983 593 119 8 56 chr9 52198515 52198640 -71877532 + L1_Mus4 LINE L1 6515 6633 -3 3 983 180 0 0 0 chr9 52200697 52200717 -71875455 + (A)n Simple_repeat Simple_repeat 1 20 0 3 983 251 288 0 14 chr9 52202519 52202593 -71873579 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 3 983 767 241 113 16 chr9 52203638 52203832 -71872340 - B3 SINE B2 -3 213 1 3 983 180 0 0 0 chr9 52204007 52204027 -71872145 + (GGGGA)n Simple_repeat Simple_repeat 3 22 0 3 983 543 16 0 0 chr9 52204043 52204107 -71872065 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 983 1150 82 0 52 chr9 52204617 52204772 -71871400 + B1_Mm SINE Alu 1 147 0 3 983 392 283 20 0 chr9 52205770 52205869 -71870303 - MLT1A0 LTR MaLR 0 365 265 3 983 1143 246 19 4 chr9 52205869 52206126 -71870046 + Lx7 LINE L1 6707 6967 -729 3 983 971 161 0 6 chr9 52206137 52206318 -71869854 + CT-rich Low_complexity Low_complexity 1 180 0 3 983 453 145 0 0 chr9 52206323 52206399 -71869773 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 3 983 195 42 0 0 chr9 52206473 52206497 -71869675 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 983 357 24 0 0 chr9 52206512 52206554 -71869618 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 983 392 345 79 93 chr9 52206625 52206916 -71869256 - MLT1A0 LTR MaLR -78 287 1 3 983 580 270 81 7 chr9 52207003 52207152 -71869020 - B3A SINE B2 -38 160 1 3 983 2239 16 0 0 chr9 52208433 52208685 -71867487 - L1Md_T LINE L1 -161 6421 6170 3 983 1113 44 0 0 chr9 52208685 52208822 -71867350 + L1Md_T LINE L1 6446 6582 0 3 983 210 316 0 13 chr9 52209385 52209462 -71866710 + (TATG)n Simple_repeat Simple_repeat 3 78 0 3 983 254 241 0 0 chr9 52209406 52209460 -71866712 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 983 21 0 0 0 chr9 52210897 52210918 -71865254 + AT_rich Low_complexity Low_complexity 1 21 0 3 983 340 276 115 32 chr9 52211203 52211360 -71864812 - MER5B DNA MER1_type 0 178 9 3 983 261 0 0 0 chr9 52211368 52211397 -71864775 + (GGA)n Simple_repeat Simple_repeat 1 29 0 3 983 4165 99 7 4 chr9 52211685 52212234 -71863938 + L1_Mus3 LINE L1 6082 6632 -6 3 983 261 0 0 0 chr9 52212278 52212307 -71863865 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 983 442 0 17 17 chr9 52212506 52212565 -71863607 + (CAA)n Simple_repeat Simple_repeat 2 60 0 3 983 1271 41 7 0 chr9 52212957 52213103 -71863069 - B1_Mus2 SINE Alu 0 147 1 3 983 781 51 0 0 chr9 52213118 52213216 -71862956 + B1_Mm SINE Alu 49 146 -1 3 983 252 143 0 0 chr9 52213219 52213261 -71862911 + (GAA)n Simple_repeat Simple_repeat 2 43 0 3 983 254 378 12 0 chr9 52213579 52213661 -71862511 - ID4 SINE ID 0 83 1 3 983 611 244 29 15 chr9 52213691 52213828 -71862344 - B1_Mur2 SINE Alu -10 139 1 3 983 279 351 6 50 chr9 52213982 52214054 -71862118 + L2a LINE L2 3028 3098 -328 3 983 1123 127 42 42 chr9 52214054 52214243 -71861929 - B2_Mm2 SINE B2 -6 189 1 3 983 279 358 39 40 chr9 52214243 52214493 -71861679 + L2a LINE L2 3095 3417 -9 3 983 264 120 0 0 chr9 52216913 52216963 -71859209 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 983 21 0 0 0 chr9 52216997 52217018 -71859154 + AT_rich Low_complexity Low_complexity 1 21 0 3 983 1017 235 45 0 chr9 52217587 52217787 -71858385 - B3 SINE B2 -7 209 1 3 983 25 51 0 0 chr9 52217794 52217833 -71858339 + AT_rich Low_complexity Low_complexity 1 39 0 3 983 194 336 25 41 chr9 52217910 52218031 -71858141 - MIR SINE MIR -21 241 123 3 983 1774 292 88 35 chr9 52218164 52219016 -71857156 + Charlie1a DNA MER1_type 483 1379 -76 3 983 697 320 51 45 chr9 52220714 52221048 -71855124 + MLT1A0 LTR MaLR 12 347 -18 3 983 899 272 152 22 chr9 52221262 52221483 -71854689 - L1MB3 LINE L1 -131 6052 5786 3 983 306 73 0 0 chr9 52221483 52221524 -71854648 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 3 983 899 272 152 22 chr9 52221524 52221539 -71854633 - L1MB3 LINE L1 -398 5785 5775 3 983 780 92 0 0 chr9 52221539 52221658 -71854514 + (GAAA)n Simple_repeat Simple_repeat 1 119 0 3 983 899 272 152 22 chr9 52221658 52221867 -71854305 - L1MB3 LINE L1 -409 5774 5548 3 983 211 337 11 11 chr9 52221916 52222006 -71854166 + MIRb SINE MIR 63 152 -116 3 983 415 184 92 0 chr9 52222008 52222084 -71854088 + PB1D9 SINE Alu 1 83 -37 3 983 756 126 0 0 chr9 52222107 52222226 -71853946 + (TG)n Simple_repeat Simple_repeat 2 120 0 3 983 227 190 0 17 chr9 52222271 52222330 -71853842 + GA-rich Low_complexity Low_complexity 3 60 0 3 983 1920 236 27 19 chr9 52222638 52223052 -71853120 + MTD LTR MaLR 3 419 0 3 983 455 291 114 110 chr9 52223107 52223397 -71852775 + B4 SINE B4 2 292 0 3 983 694 301 53 77 chr9 52223473 52223490 -71852682 - B4 SINE B4 0 292 277 3 983 402 21 0 0 chr9 52223490 52223537 -71852635 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 983 694 301 53 77 chr9 52223537 52223818 -71852354 - B4 SINE B4 -16 276 1 3 983 807 11 0 0 chr9 52225143 52225235 -71850937 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 983 806 217 86 93 chr9 52225244 52225534 -71850638 - B4A SINE B4 -3 289 2 3 983 238 143 24 0 chr9 52225567 52225609 -71850563 - ORR1A3-int LTR MaLR -343 915 873 3 983 2470 71 129 13 chr9 52225607 52225948 -71850224 + ORR1A1-int LTR MaLR 1362 1748 -44 3 983 180 0 0 0 chr9 52225948 52225968 -71850204 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 3 983 2470 71 129 13 chr9 52225968 52226012 -71850160 + ORR1A1-int LTR MaLR 1749 1792 0 3 983 2397 37 0 3 chr9 52226012 52226308 -71849864 + ORR1A1 LTR MaLR 1 295 -51 3 983 207 162 0 0 chr9 52226323 52226360 -71849812 + (CAT)n Simple_repeat Simple_repeat 3 39 0 3 983 372 336 43 7 chr9 52226440 52226581 -71849591 - RSINE1 SINE B4 -18 147 2 3 983 24646 15 0 0 chr9 52226923 52230430 -71845742 - L1Md_T LINE L1 0 6582 3076 3 983 185 226 74 19 chr9 52231189 52231243 -71844929 + MIRc SINE MIR 97 153 -115 3 983 473 32 65 0 chr9 52231271 52231333 -71844839 - L1_Mus3 LINE L1 -16 6622 6557 3 983 303 85 0 0 chr9 52233052 52233099 -71843073 + (TTA)n Simple_repeat Simple_repeat 3 49 0 3 983 299 325 0 40 chr9 52233468 52233593 -71842579 + Charlie4z DNA MER1_type 47 166 -1 3 983 214 293 127 67 chr9 52233950 52234100 -71842072 + MIR SINE MIR 9 167 -95 3 983 1051 278 14 38 chr9 52234921 52235209 -71840963 + B4A SINE B4 2 282 -10 3 983 315 0 0 0 chr9 52235254 52235289 -71840883 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 983 216 181 34 57 chr9 52235405 52235493 -71840679 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 3 983 917 207 53 5 chr9 52235611 52235800 -71840372 - B3A SINE B2 0 198 1 3 983 24 0 0 0 chr9 52235897 52235921 -71840251 + AT_rich Low_complexity Low_complexity 1 24 0 3 983 228 254 0 0 chr9 52235922 52235981 -71840191 + MIRb SINE MIR 146 204 -64 3 983 28 48 0 0 chr9 52236668 52236710 -71839462 + AT_rich Low_complexity Low_complexity 1 42 0 3 983 344 292 9 54 chr9 52236866 52236978 -71839194 - PB1D7 SINE Alu -7 113 7 3 983 227 325 116 35 chr9 52236979 52237151 -71839021 - MIR SINE MIR -38 224 39 3 983 349 333 26 13 chr9 52238386 52238538 -71837634 + Tigger5 DNA MER2_type 2133 2286 -120 3 983 636 342 24 58 chr9 52238711 52238982 -71837190 - B4A SINE B4 -28 264 3 3 983 1274 314 65 57 chr9 52239066 52239589 -71836583 + MER77 LTR ERVL 1 527 -80 3 983 2368 123 27 0 chr9 52240606 52240973 -71835199 - ORR1B1 LTR MaLR 0 394 18 3 983 204 434 46 5 chr9 52241074 52241271 -71834901 + MIRb SINE MIR 46 250 -18 3 983 264 185 0 0 chr9 52241605 52241659 -71834513 + (CACCAT)n Simple_repeat Simple_repeat 1 54 0 3 983 377 287 7 122 chr9 52241660 52241799 -71834373 - RSINE1 SINE B4 0 165 43 3 983 232 283 0 0 chr9 52241847 52241907 -71834265 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 983 283 253 200 42 chr9 52244707 52244872 -71831300 - MIRb SINE MIR -1 267 77 3 983 4981 21 0 0 chr9 52244974 52245540 -71830632 + L1Md_T LINE L1 5020 5585 -298 4 983 8754 46 0 1 chr9 52245541 52246538 -71829634 + L1Md_T LINE L1 5587 6582 0 4 983 441 0 0 0 chr9 52247393 52247442 -71828730 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 983 343 325 8 37 chr9 52247473 52247607 -71828565 + Lx8 LINE L1 7261 7390 -83 4 983 23 0 0 0 chr9 52249349 52249372 -71826800 + GC_rich Low_complexity Low_complexity 1 23 0 4 983 219 36 0 0 chr9 52251167 52251195 -71824977 + (T)n Simple_repeat Simple_repeat 1 28 0 4 983 24 53 0 0 chr9 52251336 52251374 -71824798 + AT_rich Low_complexity Low_complexity 1 38 0 4 983 414 319 36 22 chr9 52251632 52251770 -71824402 - B1F2 SINE Alu -2 147 8 4 983 249 139 0 0 chr9 52252603 52252646 -71823526 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 983 240 35 0 0 chr9 52252656 52252685 -71823487 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 983 472 209 3 12 chr9 52253178 52253309 -71822863 + L1MA5 LINE L1 5390 5517 -677 4 983 738 256 0 13 chr9 52253342 52253496 -71822676 + B4A SINE B4 41 192 -100 4 983 690 35 0 0 chr9 52253539 52253624 -71822548 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 983 1318 300 94 46 chr9 52253666 52254452 -71821720 + L1MA5 LINE L1 5476 6299 -1 4 983 273 273 151 0 chr9 52254886 52255005 -71821167 - MIRc SINE MIR -102 174 37 4 983 1975 112 6 0 chr9 52255286 52255600 -71820572 + Lx2 LINE L1 5934 6249 -748 4 983 295 285 38 89 chr9 52256810 52256968 -71819204 + RMER12 LTR ERVK 716 865 -457 4 983 240 35 0 0 chr9 52256977 52257006 -71819166 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 983 4613 166 131 1 chr9 52257470 52258401 -71817771 - Lx9 LINE L1 0 7644 6593 4 983 406 242 0 29 chr9 52258849 52258951 -71817221 - B3 SINE B2 0 216 118 4 983 505 320 88 26 chr9 52259305 52259533 -71816639 + Charlie10a DNA MER1_type 35 276 -4 4 983 202 298 12 23 chr9 52259549 52259635 -71816537 - MER5B DNA MER1_type -22 156 72 4 983 438 20 0 0 chr9 52260006 52260057 -71816115 + (A)n Simple_repeat Simple_repeat 1 51 0 4 983 25 31 0 0 chr9 52260587 52260619 -71815553 + AT_rich Low_complexity Low_complexity 1 32 0 4 983 325 268 208 29 chr9 52261437 52261823 -71814349 - L1MB3 LINE L1 -7 6176 5694 4 983 232 349 36 57 chr9 52263223 52263363 -71812809 - MIRb SINE MIR -94 174 38 4 983 394 275 48 63 chr9 52264596 52264802 -71811370 - L1MA7 LINE L1 -231 6060 5858 4 983 8439 26 15 0 chr9 52265229 52266163 -71810009 + L1Md_F3 LINE L1 5620 6567 -17 4 983 433 294 115 24 chr9 52267443 52267652 -71808520 + RMER15 LTR ERVL 347 574 -1 4 983 508 326 71 22 chr9 52268876 52269102 -71807070 - MER57C2 LTR ERV1 -81 353 117 4 983 1699 194 52 52 chr9 52269113 52269477 -71806695 - ORR1C1 LTR MaLR 0 378 15 4 983 300 354 118 24 chr9 52269621 52269754 -71806418 + MIR SINE MIR 1 138 -124 4 983 399 89 0 0 chr9 52269754 52269810 -71806362 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 983 300 354 118 24 chr9 52269810 52269887 -71806285 + MIR SINE MIR 139 230 -32 4 983 324 0 0 0 chr9 52270738 52270774 -71805398 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 983 733 301 22 11 chr9 52270779 52270964 -71805208 - B4A SINE B4 0 292 106 4 983 25 0 0 0 chr9 52271073 52271098 -71805074 + AT_rich Low_complexity Low_complexity 1 25 0 4 983 504 163 0 58 chr9 52271125 52271229 -71804943 - B2_Mm2 SINE B2 -97 98 1 4 983 207 170 0 41 chr9 52273717 52273766 -71802406 + T-rich Low_complexity Low_complexity 4 50 0 4 983 1847 296 119 41 chr9 52274969 52275736 -71800436 + Tigger6a DNA MER2_type 1 824 -259 4 983 846 223 35 92 chr9 52275736 52275922 -71800250 - B3 SINE B2 0 216 33 4 983 1274 48 0 0 chr9 52275922 52276068 -71800104 - B1_Mus2 SINE Alu 0 147 2 4 983 846 223 35 92 chr9 52276068 52276108 -71800064 - B3 SINE B2 -184 32 3 4 983 1847 296 119 41 chr9 52276108 52276299 -71799873 + Tigger6a DNA MER2_type 825 1033 -50 4 983 273 330 31 10 chr9 52276382 52276480 -71799692 + MIRb SINE MIR 167 266 -2 4 983 3105 140 47 8 chr9 52277428 52277918 -71798254 - Lx4A LINE L1 -1 7057 6549 4 983 540 0 0 0 chr9 52278022 52278082 -71798090 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 983 333 0 0 0 chr9 52278082 52278118 -71798054 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 983 290 174 0 28 chr9 52278725 52278796 -71797376 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 4 983 1735 183 30 6 chr9 52278847 52279183 -71796989 + Lx5 LINE L1 6703 7046 -4 4 983 4545 4 0 0 chr9 52279221 52279721 -71796451 - L1Md_A LINE L1 -1 6581 6082 4 983 3873 0 0 0 chr9 52279721 52280168 -71796004 + L1Md_A LINE L1 5629 6075 -507 4 983 853 246 85 56 chr9 52280168 52280633 -71795539 + RMER4B LTR ERVK 57 571 -14 4 983 225 0 0 0 chr9 52281353 52281378 -71794794 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 4 983 207 0 0 0 chr9 52281589 52281612 -71794560 + (T)n Simple_repeat Simple_repeat 1 23 0 4 983 21 0 0 0 chr9 52282074 52282095 -71794077 + GC_rich Low_complexity Low_complexity 1 21 0 4 983 187 324 181 0 chr9 52282618 52282723 -71793449 + MIRb SINE MIR 136 259 -9 4 983 21 0 0 0 chr9 52283155 52283176 -71792996 + AT_rich Low_complexity Low_complexity 1 21 0 4 983 907 304 17 14 chr9 52283375 52283665 -71792507 - B4A SINE B4 0 292 2 4 983 468 111 28 0 chr9 52283746 52283854 -71792318 + (TG)n Simple_repeat Simple_repeat 2 112 0 4 983 396 0 0 0 chr9 52284215 52284259 -71791913 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 983 364 268 47 31 chr9 52285379 52285506 -71790666 - MLT1C LTR MaLR -2 465 260 4 983 913 122 11 48 chr9 52285573 52285762 -71790410 + Lx LINE L1 6457 6638 -16 4 983 189 0 0 0 chr9 52285762 52285783 -71790389 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 983 6995 35 1 0 chr9 52285908 52286777 -71789395 - L1Md_T LINE L1 0 6582 5713 4 983 279 0 0 0 chr9 52287573 52287604 -71788568 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 983 262 330 37 48 chr9 52288998 52289186 -71786986 + L1MC5 LINE L1 5440 5625 -2257 4 983 623 319 39 42 chr9 52289197 52289482 -71786690 + MLT1A0 LTR MaLR 14 297 -68 4 983 733 255 83 0 chr9 52290159 52290351 -71785821 + ID_B1 SINE B4 4 211 -13 4 983 645 310 77 15 chr9 52290365 52290637 -71785535 + B4 SINE B4 2 290 -2 4 983 183 266 0 0 chr9 52290714 52290778 -71785394 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 983 453 36 0 0 chr9 52291038 52291093 -71785079 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 983 242 309 58 14 chr9 52291104 52291242 -71784930 + L1MC5 LINE L1 6632 6775 -1186 4 983 238 307 42 70 chr9 52291290 52291647 -71784525 + L1MC5 LINE L1 6878 7224 -737 4 983 499 308 118 48 chr9 52291763 52292281 -71783891 + L1MC5 LINE L1 7348 7901 -60 4 983 501 279 0 0 chr9 52292628 52292764 -71783408 - L1MA9 LINE L1 -8 6304 6169 4 983 24 53 0 0 chr9 52293029 52293067 -71783105 + AT_rich Low_complexity Low_complexity 1 38 0 4 983 405 0 0 0 chr9 52293134 52293179 -71782993 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 983 664 91 30 63 chr9 52293320 52293623 -71782549 + (TAGA)n Simple_repeat Simple_repeat 1 293 0 4 983 21 0 0 0 chr9 52293794 52293815 -71782357 + AT_rich Low_complexity Low_complexity 1 21 0 4 983 21 36 0 0 chr9 52294684 52294712 -71781460 + AT_rich Low_complexity Low_complexity 1 28 0 4 983 247 85 43 0 chr9 52295049 52295096 -71781076 + (CAT)n Simple_repeat Simple_repeat 3 51 0 4 983 408 155 0 0 chr9 52295107 52295178 -71780994 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 4 983 262 327 64 2 chr9 52295846 52295956 -71780216 + MIRb SINE MIR 7 124 -138 4 122 525 303 107 32 chr9 52297222 52297782 -71778390 + L1M2 LINE L1 2640 3241 -2902 4 984 285 149 0 0 chr9 52298106 52298173 -71777999 + (T)n Simple_repeat Simple_repeat 1 67 0 4 984 263 322 34 0 chr9 52298616 52298734 -71777438 + Lx7 LINE L1 7187 7308 -388 4 984 216 67 0 0 chr9 52298741 52298771 -71777401 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 984 419 313 36 4 chr9 52298786 52298934 -71777238 - B3A SINE B2 -46 170 5 4 984 2833 49 0 6 chr9 52299325 52299673 -71776499 - ORR1A1 LTR MaLR 0 346 1 4 984 1242 40 0 0 chr9 52300268 52300420 -71775752 + L1_Mus1 LINE L1 6416 6567 0 4 984 436 114 23 0 chr9 52302113 52302201 -71773971 + Lx9 LINE L1 7428 7517 -127 4 984 345 217 0 0 chr9 52302201 52302284 -71773888 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 984 426 173 117 26 chr9 52302314 52302468 -71773704 + Lx9 LINE L1 7477 7644 0 4 984 639 269 39 19 chr9 52302873 52303078 -71773094 + ID_B1 SINE B4 2 210 -14 4 984 209 259 0 18 chr9 52303336 52303391 -71772781 - MIR SINE MIR -64 144 91 4 984 288 266 0 0 chr9 52303764 52303843 -71772329 + GA-rich Low_complexity Low_complexity 2 80 0 4 984 250 325 0 35 chr9 52304149 52304235 -71771937 + MIRc SINE MIR 59 141 -127 4 984 24 32 0 0 chr9 52306376 52306407 -71769765 + AT_rich Low_complexity Low_complexity 1 31 0 4 984 367 250 50 67 chr9 52306537 52306717 -71769455 + L1M2 LINE L1 3537 3713 -2430 4 984 279 0 0 0 chr9 52306720 52306751 -71769421 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 984 405 0 0 0 chr9 52306751 52306795 -71769377 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 984 975 287 38 30 chr9 52306904 52307428 -71768744 + L1M2 LINE L1 4244 4771 -1372 4 984 761 310 84 28 chr9 52307438 52308255 -71767917 + L1M2 LINE L1 4918 5822 -346 4 984 918 207 48 15 chr9 52309589 52309795 -71766377 - B3 SINE B2 -3 213 1 4 984 441 0 0 0 chr9 52310055 52310104 -71766068 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 984 529 124 21 0 chr9 52310106 52310203 -71765969 + (TA)n Simple_repeat Simple_repeat 2 100 0 4 984 320 258 0 0 chr9 52310329 52310391 -71765781 + ID4 SINE ID 14 75 -8 4 984 1424 0 23 0 chr9 52310392 52310568 -71765604 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 984 322 272 0 0 chr9 52310575 52310667 -71765505 + (CAGA)n Simple_repeat Simple_repeat 3 94 0 4 984 228 305 72 12 chr9 52310682 52310765 -71765407 + MER5B DNA MER1_type 52 139 -39 4 984 408 272 80 139 chr9 52310750 52311152 -71765020 - MLT1B LTR MaLR -7 383 6 5 984 318 279 58 0 chr9 52311231 52311335 -71764837 - MER5A1 DNA MER1_type 0 166 57 5 984 2241 183 12 222 chr9 52311904 52312678 -71763494 - RMER19C LTR ERVK 0 611 1 5 984 664 222 30 104 chr9 52314022 52314253 -71761919 - B3 SINE B2 0 216 3 5 984 486 297 220 30 chr9 52314406 52314802 -71761370 - L1MC4 LINE L1 -870 7172 6702 5 984 312 296 62 31 chr9 52314844 52314973 -71761199 - L1MC4 LINE L1 -1489 6553 6410 5 984 306 0 0 0 chr9 52315521 52315555 -71760617 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 984 423 0 0 0 chr9 52315555 52315601 -71760571 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 984 239 288 211 26 chr9 52316276 52316504 -71759668 + L2 LINE L2 190 459 -2960 5 984 216 130 0 0 chr9 52316965 52317011 -71759161 + (A)n Simple_repeat Simple_repeat 1 46 0 5 984 208 241 0 0 chr9 52317238 52317296 -71758876 + T-rich Low_complexity Low_complexity 1 58 0 5 984 7303 123 38 9 chr9 52317298 52318473 -71757699 - Lx4A LINE L1 0 7058 5850 5 984 4570 113 6 11 chr9 52318473 52319197 -71756975 + Lx4A LINE L1 5158 5877 0 5 984 318 357 94 47 chr9 52320024 52320300 -71755872 - MLT1K LTR MaLR -4 591 303 5 984 935 290 11 11 chr9 52320301 52320483 -71755689 - Lx7 LINE L1 -1177 6519 6338 5 984 1017 0 0 0 chr9 52320483 52320596 -71755576 + (TTTCC)n Simple_repeat Simple_repeat 4 116 0 5 984 504 48 0 0 chr9 52320596 52320658 -71755514 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 984 935 290 11 11 chr9 52320658 52320739 -71755433 - Lx7 LINE L1 -1359 6337 6256 5 984 1396 271 23 11 chr9 52320773 52321206 -71754966 + Lx7 LINE L1 6863 7300 -396 5 984 188 163 23 0 chr9 52321315 52321358 -71754814 + GA-rich Low_complexity Low_complexity 1 44 0 5 984 34 65 0 0 chr9 52321423 52321485 -71754687 + AT_rich Low_complexity Low_complexity 1 62 0 5 984 708 177 7 37 chr9 52321917 52322052 -71754120 + ORR1B2 LTR MaLR 229 359 -8 5 984 228 192 0 0 chr9 52322139 52322191 -71753981 - MIRc SINE MIR -31 237 186 5 984 692 228 0 0 chr9 52324130 52324257 -71751915 - B1_Mur4 SINE Alu -21 129 3 5 984 2344 132 7 72 chr9 52324296 52324713 -71751459 - ORR1B1 LTR MaLR 0 394 5 5 984 1621 207 161 4 chr9 52325577 52325696 -71750476 - Lx9 LINE L1 -1 7643 7517 5 984 444 37 0 0 chr9 52325696 52325750 -71750422 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 984 1621 207 161 4 chr9 52325750 52326101 -71750071 - Lx9 LINE L1 -128 7516 7101 5 984 2373 108 9 3 chr9 52326118 52326462 -71749710 - Lx2 LINE L1 -3 6994 6649 5 984 5302 113 82 0 chr9 52326464 52327345 -71748827 + Lx2 LINE L1 5685 6637 -360 5 984 17477 91 9 7 chr9 52327393 52330665 -71745507 + L1Md_A LINE L1 446 3720 -2163 5 984 4393 49 0 4 chr9 52330666 52331202 -71744970 + L1Md_F2 LINE L1 6035 6568 -14 5 984 2790 218 70 21 chr9 52331216 52331939 -71744233 - Lx9 LINE L1 -579 7065 6307 5 984 294 73 0 0 chr9 52332587 52332628 -71743544 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 984 229 244 70 47 chr9 52333076 52333162 -71743010 - LTR82A LTR ERVL -211 661 574 5 984 473 363 69 21 chr9 52333257 52333416 -71742756 - LTR82A LTR ERVL -438 434 266 5 984 792 59 0 0 chr9 52333416 52333518 -71742654 + (GA)n Simple_repeat Simple_repeat 2 103 0 5 984 473 363 69 21 chr9 52333518 52333693 -71742479 - LTR82A LTR ERVL -607 265 85 5 984 220 314 48 8 chr9 52334158 52334283 -71741889 + MIR SINE MIR 98 227 -35 5 984 998 101 0 7 chr9 52334285 52334424 -71741748 + B1_Mus2 SINE Alu 1 138 -9 5 984 672 13 0 0 chr9 52334424 52334501 -71741671 + (CAAAC)n Simple_repeat Simple_repeat 2 78 0 5 984 457 288 15 67 chr9 52334993 52335127 -71741045 + RSINE1 SINE B4 1 127 -38 5 984 39 22 0 0 chr9 52335298 52335344 -71740828 + AT_rich Low_complexity Low_complexity 1 46 0 5 984 319 302 144 0 chr9 52335406 52335545 -71740627 - RSINE1 SINE B4 -6 159 1 5 984 222 118 0 0 chr9 52335556 52335590 -71740582 + (AAATG)n Simple_repeat Simple_repeat 2 35 0 5 984 197 211 0 0 chr9 52336357 52336395 -71739777 + L2a LINE L2 3389 3426 0 5 984 1978 223 25 0 chr9 52339368 52339763 -71736409 - MTD LTR MaLR -14 405 1 5 984 24 67 0 0 chr9 52340196 52340241 -71735931 + AT_rich Low_complexity Low_complexity 1 45 0 5 984 22 0 0 0 chr9 52340286 52340308 -71735864 + AT_rich Low_complexity Low_complexity 1 22 0 5 984 240 35 0 0 chr9 52340408 52340437 -71735735 + (A)n Simple_repeat Simple_repeat 1 29 0 5 984 663 313 63 31 chr9 52340561 52340572 -71735600 - RMER5 LTR ERV1 0 534 525 5 984 279 79 0 0 chr9 52340572 52340610 -71735562 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 5 984 663 313 63 31 chr9 52340610 52340885 -71735287 - RMER5 LTR ERV1 -10 524 240 5 984 1126 249 183 1 chr9 52340945 52341287 -71734885 - MTD LTR MaLR -19 400 18 5 984 408 259 55 18 chr9 52341286 52341396 -71734776 - RMER5 LTR ERV1 -373 161 48 5 984 626 175 406 0 chr9 52341599 52341759 -71734413 + URR1A DNA MER1_type 1 225 -1 5 984 306 0 0 0 chr9 52342238 52342272 -71733900 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 984 513 0 0 0 chr9 52342272 52342328 -71733844 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 984 3046 267 36 42 chr9 52342330 52343328 -71732844 + Lx9 LINE L1 6521 7512 -132 5 984 286 192 0 0 chr9 52343338 52343390 -71732782 - ORR1B1 LTR MaLR -342 52 1 5 984 180 0 0 0 chr9 52343396 52343416 -71732756 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 984 239 314 28 19 chr9 52344793 52344900 -71731272 + PB1D10 SINE Alu 1 108 -9 5 984 232 350 35 9 chr9 52345186 52345315 -71730857 - MIR SINE MIR -104 158 35 5 984 224 200 0 0 chr9 52345973 52346018 -71730154 + L2a LINE L2 3380 3424 -2 5 984 216 0 0 0 chr9 52346388 52346412 -71729760 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 984 543 13 40 0 chr9 52346412 52346487 -71729685 + (GTTTG)n Simple_repeat Simple_repeat 2 80 0 5 984 180 111 0 0 chr9 52346601 52346628 -71729544 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 984 59 70 0 0 chr9 52346701 52346816 -71729356 + AT_rich Low_complexity Low_complexity 1 115 0 5 984 339 225 53 12 chr9 52346816 52346987 -71729185 + (TA)n Simple_repeat Simple_repeat 1 178 0 5 984 254 127 0 0 chr9 52346993 52347056 -71729116 + MT2A LTR ERVL 471 533 0 5 984 720 285 17 0 chr9 52347272 52347451 -71728721 - B3A SINE B2 -16 182 1 5 984 420 275 93 122 chr9 52347712 52348155 -71728017 - RLTR23 LTR ERV1 0 430 1 5 984 368 91 0 15 chr9 52349820 52349887 -71726285 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 5 984 426 306 2 13 chr9 52350894 52351017 -71725155 - B4 SINE B4 -65 227 111 5 984 591 264 0 0 chr9 52351439 52351560 -71724612 + B1_Mur1 SINE Alu 18 138 -11 5 984 324 282 82 22 chr9 52351675 52351692 -71724480 - ID_B1 SINE B4 -1 223 82 5 984 395 302 26 8 chr9 52351692 52351809 -71724363 - B1F SINE Alu -30 119 1 5 984 25 0 0 0 chr9 52353061 52353086 -71723086 + AT_rich Low_complexity Low_complexity 1 25 0 5 984 228 100 0 0 chr9 52353657 52353697 -71722475 + (T)n Simple_repeat Simple_repeat 1 40 0 5 984 533 146 19 0 chr9 52354784 52354887 -71721285 + (CATATA)n Simple_repeat Simple_repeat 2 106 0 5 984 364 294 207 6 chr9 52355343 52355507 -71720665 - B3A SINE B2 0 198 2 5 984 205 311 0 32 chr9 52355704 52355767 -71720405 - MIRm SINE MIR -177 99 39 5 984 608 328 22 38 chr9 52356319 52356636 -71719536 + Lx9 LINE L1 6961 7272 -372 5 984 621 192 23 0 chr9 52356672 52356802 -71719370 + URR1A DNA MER1_type 64 196 -30 5 984 527 228 129 34 chr9 52356860 52357124 -71719048 + Lx9 LINE L1 7350 7638 -6 5 984 414 0 0 0 chr9 52357363 52357409 -71718763 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 984 378 61 0 0 chr9 52358231 52358280 -71717892 + (TATG)n Simple_repeat Simple_repeat 3 51 0 5 984 857 160 6 83 chr9 52358498 52358655 -71717517 - B1_Mur2 SINE Alu -2 147 3 5 984 327 300 65 24 chr9 52360296 52360419 -71715753 - MIRc SINE MIR -106 162 35 5 984 500 0 17 0 chr9 52360508 52360568 -71715604 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 984 423 0 0 0 chr9 52360568 52360614 -71715558 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 984 265 299 39 13 chr9 52360696 52360774 -71715398 - ID4 SINE ID -1 82 3 5 984 6365 144 17 4 chr9 52361051 52362183 -71713989 - Lx4B LINE L1 -667 5915 4762 5 984 2171 191 31 2 chr9 52362181 52362637 -71713535 + Lx4B LINE L1 5916 6384 -674 5 984 244 206 147 49 chr9 52362658 52362760 -71713412 + Lx4B LINE L1 6947 7058 0 5 984 642 335 31 0 chr9 52363235 52363426 -71712746 + Tigger5 DNA MER2_type 53 243 -2163 5 984 551 315 55 10 chr9 52363443 52363645 -71712527 + Tigger5 DNA MER2_type 2196 2406 0 5 984 226 306 0 45 chr9 52363826 52363915 -71712257 - MLT1L LTR MaLR -319 291 207 5 984 492 245 116 0 chr9 52364211 52364358 -71711814 + B3A SINE B2 1 164 -34 5 984 319 287 63 100 chr9 52364622 52364812 -71711360 - MER53 DNA hAT -10 183 1 5 984 646 259 28 28 chr9 52365196 52365339 -71710833 - B1F1 SINE Alu -1 148 6 5 984 1347 72 0 0 chr9 52366296 52366476 -71709696 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 984 317 113 0 46 chr9 52366476 52366541 -71709631 + CT-rich Low_complexity Low_complexity 2 63 0 5 984 469 237 25 58 chr9 52366548 52366669 -71709503 - ID_B1 SINE B4 -3 221 105 5 984 217 163 0 23 chr9 52366841 52366885 -71709287 + T-rich Low_complexity Low_complexity 2 44 0 5 984 244 317 23 75 chr9 52368181 52368314 -71707858 + MIRb SINE MIR 42 167 -101 5 984 1369 218 163 8 chr9 52368437 52368798 -71707374 + MTD LTR MaLR 3 419 0 5 984 312 27 0 0 chr9 52369063 52369100 -71707072 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 984 498 337 150 16 chr9 52369127 52369380 -71706792 - B4A SINE B4 -1 291 5 5 984 1581 32 0 16 chr9 52369411 52369601 -71706571 + B2_Mm1a SINE B2 2 188 -5 5 984 296 318 81 0 chr9 52369612 52369810 -71706362 + L1M3 LINE L1 4915 5128 -1012 5 984 266 175 12 0 chr9 52369924 52370004 -71706168 + GA-rich Low_complexity Low_complexity 2 82 0 5 984 1324 274 46 14 chr9 52370172 52370538 -71705634 - MTD LTR MaLR 0 419 42 5 984 344 322 136 44 chr9 52371097 52371347 -71704825 - L1MEc LINE L1 -4805 1595 1323 5 984 27 0 0 0 chr9 52371418 52371445 -71704727 + AT_rich Low_complexity Low_complexity 1 27 0 6 984 270 0 0 0 chr9 52371535 52371565 -71704607 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6 984 1425 12 0 0 chr9 52371565 52371727 -71704445 + (GAA)n Simple_repeat Simple_repeat 3 165 0 6 984 1020 316 136 20 chr9 52371993 52372639 -71703533 - L1MEc LINE L1 -5545 855 135 5 984 723 341 24 12 chr9 52372639 52372891 -71703281 + B4A SINE B4 2 256 -36 6 984 399 41 0 0 chr9 52372905 52372954 -71703218 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 984 351 0 0 0 chr9 52373721 52373760 -71702412 + (TAA)n Simple_repeat Simple_repeat 3 41 0 6 984 363 78 0 0 chr9 52374323 52374374 -71701798 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 984 614 90 0 18 chr9 52375265 52375378 -71700794 + (CAAAC)n Simple_repeat Simple_repeat 5 115 0 6 984 199 403 44 22 chr9 52375487 52375624 -71700548 + L2b LINE L2 3225 3364 -11 6 984 726 319 134 22 chr9 52376067 52376432 -71699740 - MLT1G1 LTR MaLR -2 577 172 6 984 217 217 0 0 chr9 52377529 52377575 -71698597 + GA-rich Low_complexity Low_complexity 1 46 0 6 984 738 247 16 38 chr9 52377575 52377760 -71698412 - ORR1D1 LTR MaLR -193 181 1 6 984 1927 112 65 62 chr9 52378050 52378374 -71697798 - ORR1A3 LTR MaLR 0 326 2 6 984 196 312 62 0 chr9 52378670 52378750 -71697422 + L2b LINE L2 3291 3375 0 6 984 1498 270 63 6 chr9 52379219 52379745 -71696427 - Lx9 LINE L1 0 7644 7089 6 984 241 208 0 0 chr9 52379782 52379830 -71696342 - Lx9 LINE L1 -647 6997 6950 6 984 1032 221 128 23 chr9 52380471 52380861 -71695311 + MER95 LTR ERV 1 431 0 6 984 1341 256 63 30 chr9 52381040 52381407 -71694765 + MTE2b LTR MaLR 1 379 0 6 984 252 0 0 0 chr9 52382119 52382147 -71694025 + (T)n Simple_repeat Simple_repeat 1 28 0 6 984 215 326 40 85 chr9 52382558 52382703 -71693469 - MIRc SINE MIR -116 160 17 6 984 716 17 24 48 chr9 52384330 52384456 -71691716 + (GTTTG)n Simple_repeat Simple_repeat 2 124 0 6 984 811 165 14 41 chr9 52384461 52384606 -71691566 - B1_Mur3 SINE Alu -6 143 3 6 984 794 330 10 6 chr9 52384629 52384940 -71691232 + Lx7 LINE L1 6997 7308 -388 6 984 25 75 0 0 chr9 52385068 52385121 -71691051 + AT_rich Low_complexity Low_complexity 1 53 0 6 984 640 259 89 30 chr9 52385367 52385570 -71690602 + B3 SINE B2 2 216 0 6 984 297 340 69 0 chr9 52385612 52385756 -71690416 + MIR SINE MIR 78 231 -31 6 984 1617 301 58 26 chr9 52386075 52386838 -71689334 + Lx9 LINE L1 6663 7449 -195 6 984 396 0 0 0 chr9 52386839 52386883 -71689289 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 984 603 281 78 49 chr9 52387059 52387343 -71688829 - B4A SINE B4 0 292 1 6 984 330 360 43 34 chr9 52387343 52387576 -71688596 + MIRc SINE MIR 19 253 -15 6 984 455 316 83 99 chr9 52388502 52388864 -71687308 - MLT1A1 LTR MaLR -38 370 15 6 984 1267 229 151 22 chr9 52389011 52389382 -71686790 + MTD LTR MaLR 1 419 0 6 984 3690 249 88 51 chr9 52389382 52390595 -71685577 + MTD-int LTR MaLR 1 1258 0 6 984 1790 218 63 23 chr9 52390595 52390990 -71685182 + MTD LTR MaLR 1 411 -8 6 984 683 300 14 32 chr9 52391003 52391220 -71684952 + B3 SINE B2 3 215 -1 6 984 652 276 126 67 chr9 52392719 52393077 -71683095 - MTEa LTR MaLR 0 379 1 6 984 324 70 0 0 chr9 52393359 52393402 -71682770 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 984 651 26 0 0 chr9 52394043 52394120 -71682052 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 6 984 5326 57 5 0 chr9 52394413 52395078 -71681094 + L1Md_F2 LINE L1 5914 6581 -1 6 984 1168 272 55 30 chr9 52395202 52395603 -71680569 + MTD LTR MaLR 9 419 0 6 984 423 0 0 0 chr9 52396074 52396121 -71680051 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 984 273 118 0 0 chr9 52396121 52396172 -71680000 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 6 984 229 329 24 12 chr9 52396182 52396265 -71679907 - LTR48 LTR ERV1 -631 156 73 6 984 297 100 0 0 chr9 52396604 52396654 -71679518 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 6 984 27 29 0 0 chr9 52396944 52396978 -71679194 + AT_rich Low_complexity Low_complexity 1 34 0 6 984 901 168 0 0 chr9 52397282 52397425 -71678747 + B1_Mur2 SINE Alu 1 143 -6 6 984 229 322 69 9 chr9 52397917 52398033 -71678139 + L2b LINE L2 3045 3167 -208 6 984 26 0 0 0 chr9 52399243 52399269 -71676903 + AT_rich Low_complexity Low_complexity 1 26 0 6 984 190 432 15 36 chr9 52399732 52399869 -71676303 + L2b LINE L2 3254 3387 0 6 984 285 98 0 0 chr9 52399898 52399939 -71676233 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 6 984 227 133 22 0 chr9 52399964 52400009 -71676163 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 984 576 42 0 0 chr9 52400028 52400099 -71676073 + (TATG)n Simple_repeat Simple_repeat 4 74 0 6 984 740 289 26 57 chr9 52400536 52400800 -71675372 + MLT1A1 LTR MaLR 73 328 -80 6 984 1179 55 0 27 chr9 52401897 52402047 -71674125 + B1_Mus1 SINE Alu 3 148 0 6 984 217 151 0 54 chr9 52402047 52402103 -71674069 + A-rich Low_complexity Low_complexity 5 57 0 6 984 519 341 24 5 chr9 52402561 52402770 -71673402 - MER20 DNA MER1_type -6 213 1 6 984 277 316 25 0 chr9 52403351 52403430 -71672742 + ID4_ SINE ID 1 81 -2 6 984 277 314 33 44 chr9 52403430 52403441 -71672731 + ID SINE ID 1 89 -135 6 984 377 297 27 46 chr9 52403578 52403839 -71672333 - L1ME3B LINE L1 -187 6053 5798 6 984 256 236 19 123 chr9 52405176 52405282 -71670890 + MLT1J1 LTR MaLR 121 215 -229 6 984 254 287 28 56 chr9 52405306 52405413 -71670759 + CT-rich Low_complexity Low_complexity 2 105 0 6 984 206 346 0 13 chr9 52408194 52408273 -71667899 + CT-rich Low_complexity Low_complexity 4 81 0 6 984 660 87 0 0 chr9 52408403 52408495 -71667677 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 984 32691 65 5 3 chr9 52408940 52414070 -71662102 + L1Md_A LINE L1 488 5586 -297 6 984 8072 48 2 3 chr9 52414070 52415066 -71661106 + L1Md_F2 LINE L1 5587 6581 -1 6 984 24 0 0 0 chr9 52415992 52416016 -71660156 + AT_rich Low_complexity Low_complexity 1 24 0 6 984 421 306 49 63 chr9 52417267 52417490 -71658682 + L1ME4a LINE L1 5542 5761 -363 6 984 321 252 81 0 chr9 52417579 52417702 -71658470 + L1ME4a LINE L1 5980 6112 -12 6 984 631 81 10 10 chr9 52418578 52418678 -71657494 + (GGGAGA)n Simple_repeat Simple_repeat 4 103 0 6 984 262 273 224 32 chr9 52418714 52418839 -71657333 + B1F SINE Alu 1 149 0 6 984 189 0 0 0 chr9 52418839 52418860 -71657312 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 6 984 36939 4 0 0 chr9 52418913 52424284 -71651888 + L1Md_A LINE L1 215 5586 -297 6 984 9050 3 0 0 chr9 52424284 52425280 -71650892 + L1Md_A LINE L1 5587 6582 0 6 984 477 0 0 0 chr9 52425535 52425588 -71650584 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 984 209 33 33 0 chr9 52426727 52426757 -71649415 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 6 984 535 276 140 5 chr9 52426928 52427067 -71649105 + B3 SINE B2 1 164 -52 6 984 540 0 0 0 chr9 52427067 52427127 -71649045 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 984 535 276 140 5 chr9 52427127 52427173 -71648999 + B3 SINE B2 165 211 -5 6 984 776 65 0 9 chr9 52427565 52427673 -71648499 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 6 984 2930 88 35 19 chr9 52427679 52427930 -71648242 - L1_Mus3 LINE L1 -13 6625 6376 6 984 270 0 0 0 chr9 52427930 52427960 -71648212 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 984 2930 88 35 19 chr9 52427960 52428138 -71648034 - L1_Mus3 LINE L1 -263 6375 6189 6 984 570 29 0 0 chr9 52428309 52428377 -71647795 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 15 772 326 139 36 chr9 52428377 52429118 -71647054 + L2a LINE L2 2594 3421 -5 6 985 22 0 0 0 chr9 52429649 52429671 -71646501 + AT_rich Low_complexity Low_complexity 1 22 0 6 985 402 21 0 0 chr9 52430343 52430390 -71645782 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 985 185 297 47 0 chr9 52430493 52430557 -71645615 - L2 LINE L2 -816 2603 2537 6 985 317 335 89 6 chr9 52430697 52430865 -71645307 - MER3 DNA MER1_type -27 182 1 6 985 327 357 36 0 chr9 52431260 52431400 -71644772 + B1F1 SINE Alu 5 149 0 6 985 185 362 0 0 chr9 52432264 52432322 -71643850 + L2 LINE L2 1956 2013 -1406 6 985 253 348 52 21 chr9 52433482 52433673 -71642499 + MIRb SINE MIR 46 242 -26 6 985 650 303 150 22 chr9 52434005 52434457 -71641715 + Lx8 LINE L1 6959 7468 -5 6 985 545 233 0 49 chr9 52434995 52435117 -71641055 + MTEa LTR MaLR 1 116 -263 6 985 431 247 189 20 chr9 52435151 52435304 -71640868 + MTEa LTR MaLR 181 359 0 6 985 235 264 17 149 chr9 52435404 52435578 -71640594 - L2a LINE L2 -1 3425 3275 6 985 275 241 43 19 chr9 52436679 52436840 -71639332 + (TA)n Simple_repeat Simple_repeat 2 166 0 6 985 436 303 144 0 chr9 52437213 52437345 -71638827 - MT2A LTR ERVL 0 533 383 6 985 298 310 0 0 chr9 52437332 52437390 -71638782 + MT2A LTR ERVL 295 352 -181 6 985 7677 30 0 4 chr9 52438228 52439179 -71636993 - L1Md_T LINE L1 0 6582 5636 6 985 477 0 0 0 chr9 52439919 52439972 -71636200 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 985 732 291 53 23 chr9 52440055 52440354 -71635818 + MER89 LTR ERV1 1 308 -251 6 985 452 308 17 0 chr9 52440355 52440472 -71635700 + B1F SINE Alu 2 120 -29 6 985 694 308 66 8 chr9 52440531 52440773 -71635399 + MER89 LTR ERV1 304 559 0 6 985 256 273 0 0 chr9 52440836 52440891 -71635281 + MER91C DNA Tip100 85 139 -1 6 985 566 352 65 55 chr9 52441071 52441396 -71634776 + MLT1A0 LTR MaLR 2 329 -36 6 985 21 0 0 0 chr9 52441651 52441672 -71634500 + AT_rich Low_complexity Low_complexity 1 21 0 6 985 414 356 71 25 chr9 52441867 52442063 -71634109 + MER63A DNA AcHobo 6 210 0 6 985 254 346 141 36 chr9 52443939 52444188 -71631984 - L2 LINE L2 -2385 1034 760 6 985 256 364 0 13 chr9 52444188 52444266 -71631906 + B4A SINE B4 1 77 -215 6 985 1169 259 102 14 chr9 52444299 52444652 -71631520 + Lx8 LINE L1 7090 7473 0 6 985 369 0 0 0 chr9 52444861 52444902 -71631270 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 985 340 330 163 73 chr9 52444997 52445493 -71630679 - L2 LINE L2 -2842 577 37 6 985 648 304 129 12 chr9 52445660 52445916 -71630256 - B4A SINE B4 -2 290 5 7 985 234 0 0 0 chr9 52446226 52446252 -71629920 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 985 1183 291 151 18 chr9 52446273 52446777 -71629395 - MLT2F LTR ERVL -92 571 1 7 985 502 297 80 49 chr9 52446785 52447240 -71628932 - ERVL-int LTR ERVL -8 5749 5152 7 985 614 357 88 7 chr9 52447241 52447548 -71628624 - MLT1F1 LTR MaLR 0 569 238 7 985 255 208 194 0 chr9 52447971 52448043 -71628129 + MTEb LTR MaLR 287 372 -7 7 985 276 331 51 57 chr9 52448064 52448221 -71627951 - MLT1F1 LTR MaLR -369 200 45 7 985 213 339 85 45 chr9 52448330 52448531 -71627641 + L2 LINE L2 2766 2974 -445 7 985 926 212 113 5 chr9 52449111 52449324 -71626848 - MTD LTR MaLR 0 419 184 7 985 22 35 0 0 chr9 52449527 52449556 -71626616 + AT_rich Low_complexity Low_complexity 1 29 0 7 985 27 0 0 0 chr9 52449646 52449673 -71626499 + AT_rich Low_complexity Low_complexity 1 27 0 7 985 1088 284 34 31 chr9 52449722 52450046 -71626126 + MTEa LTR MaLR 48 372 -7 7 985 350 323 68 0 chr9 52450321 52450454 -71625718 + MLT1D LTR MaLR 361 502 -3 7 985 245 270 16 0 chr9 52451895 52451958 -71624214 + MLT1J LTR MaLR 124 187 -325 7 985 652 307 63 59 chr9 52452276 52452546 -71623626 + B4A SINE B4 6 276 -16 7 985 506 170 7 28 chr9 52452594 52452739 -71623433 + CT-rich Low_complexity Low_complexity 3 144 0 7 985 620 320 77 67 chr9 52452800 52453112 -71623060 - MTEb LTR MaLR 0 379 65 7 985 780 300 97 41 chr9 52453119 52453460 -71622712 - MTE-int LTR MaLR -1 1579 1220 7 985 4120 291 46 30 chr9 52453848 52455063 -71621109 - MTE-int LTR MaLR -346 1234 1 7 985 586 317 18 30 chr9 52455265 52455431 -71620741 + RSINE1 SINE B4 2 165 0 7 985 230 406 43 6 chr9 52455665 52455826 -71620346 + MLT1J-int LTR MaLR 685 851 -558 7 985 259 340 30 20 chr9 52456168 52456267 -71619905 + MLT1J-int LTR MaLR 1284 1383 -4 7 985 228 281 103 40 chr9 52456711 52456837 -71619335 + LTR16C LTR ERVL 260 393 -96 7 985 711 258 105 7 chr9 52457073 52457350 -71618822 - L1MA4 LINE L1 -377 5923 5620 7 985 203 0 37 0 chr9 52457484 52457511 -71618661 + (TTA)n Simple_repeat Simple_repeat 2 29 0 7 985 213 371 0 0 chr9 52457681 52457743 -71618429 + MIR SINE MIR 40 101 -161 7 985 269 294 0 0 chr9 52457826 52457894 -71618278 - MLT1I LTR MaLR -34 377 310 7 985 378 0 0 0 chr9 52457964 52458006 -71618166 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 985 1212 317 105 6 chr9 52458033 52458576 -71617596 - Lx8 LINE L1 -123 7350 6754 7 985 1092 277 20 89 chr9 52459599 52459991 -71616181 - MTEa LTR MaLR -12 367 3 7 985 685 229 64 74 chr9 52460579 52460763 -71615409 + B3 SINE B2 16 196 -20 7 985 429 20 0 0 chr9 52460763 52460813 -71615359 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 985 685 229 64 74 chr9 52460813 52460831 -71615341 + B3 SINE B2 197 215 -1 7 985 791 161 168 0 chr9 52461289 52461444 -71614728 + URR1B DNA MER1_type 45 225 0 7 985 329 250 69 50 chr9 52461503 52461604 -71614568 + L1MEc LINE L1 1276 1378 -5956 7 985 216 282 146 39 chr9 52461970 52462110 -71614062 + L2b LINE L2 3243 3387 0 7 985 405 0 0 0 chr9 52463049 52463094 -71613078 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 985 225 0 0 0 chr9 52463094 52463118 -71613054 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 985 755 311 21 54 chr9 52463183 52463424 -71612748 - B4A SINE B4 -59 233 1 7 985 590 241 154 8 chr9 52463939 52464226 -71611946 + L1MEc LINE L1 2948 3273 -3733 7 985 630 288 5 58 chr9 52464247 52464435 -71611737 + B3A SINE B2 5 182 -16 7 985 268 303 84 20 chr9 52464581 52464783 -71611389 - L1MEb LINE L1 -4896 1304 1090 7 985 227 357 35 7 chr9 52465026 52465170 -71611002 - L1MEb LINE L1 -5383 817 670 7 985 448 321 45 164 chr9 52465176 52465578 -71610594 + ORR1D2 LTR MaLR 1 363 -7 7 985 338 339 119 13 chr9 52465600 52465836 -71610336 - L1MEb LINE L1 -5446 648 388 7 985 919 235 16 26 chr9 52466154 52466346 -71609826 - B3 SINE B2 -24 192 3 7 985 342 330 42 8 chr9 52467016 52467135 -71609037 - MER5A1 DNA MER1_type -43 123 1 7 985 553 292 34 0 chr9 52467694 52467841 -71608331 + RSINE1 SINE B4 2 153 -12 7 985 364 289 36 36 chr9 52468511 52468651 -71607521 - B4A SINE B4 -140 152 13 7 985 1094 220 128 30 chr9 52468683 52469028 -71607144 + MTD LTR MaLR 10 419 0 7 985 399 358 16 50 chr9 52469048 52469230 -71606942 - MIR SINE MIR -86 176 1 7 985 365 356 44 44 chr9 52469644 52469826 -71606346 - LTR16C LTR ERVL -223 266 85 7 985 242 401 17 34 chr9 52471046 52471224 -71604948 + MIRb SINE MIR 2 176 -92 7 985 358 350 98 48 chr9 52471510 52471846 -71604326 + ORR1E LTR MaLR 2 354 -5 7 985 959 254 61 0 chr9 52472427 52472655 -71603517 - B4 SINE B4 -48 244 3 7 985 2703 134 13 5 chr9 52472752 52473143 -71603029 - ORR1B1 LTR MaLR 0 394 1 7 985 571 295 72 18 chr9 52474004 52474225 -71601947 + RLTR42-int LTR ERVK 1156 1388 -4134 7 985 417 86 0 0 chr9 52474439 52474497 -71601675 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 985 1226 62 0 7 chr9 52475927 52476074 -71600098 + B1_Mus2 SINE Alu 1 146 -1 7 985 360 0 0 0 chr9 52476079 52476119 -71600053 + (TTAA)n Simple_repeat Simple_repeat 4 43 0 7 985 21 0 0 0 chr9 52476929 52476950 -71599222 + AT_rich Low_complexity Low_complexity 1 21 0 7 985 200 349 77 6 chr9 52477010 52477180 -71598992 + L2a LINE L2 3116 3297 -129 7 985 405 462 103 12 chr9 52478554 52478953 -71597219 + LTR81B LTR ERV1? 716 1150 -243 7 985 198 191 0 0 chr9 52479441 52479483 -71596689 + (TATG)n Simple_repeat Simple_repeat 2 43 0 7 985 301 423 58 73 chr9 52479998 52480641 -71595531 + MamGypLTR2 LTR Gypsy 78 710 -479 7 985 432 0 0 0 chr9 52480929 52480977 -71595195 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 985 243 0 0 0 chr9 52484907 52484934 -71591238 + (A)n Simple_repeat Simple_repeat 1 27 0 7 985 210 283 0 0 chr9 52485913 52485973 -71590199 + GA-rich Low_complexity Low_complexity 2 61 0 7 985 348 210 0 0 chr9 52487777 52487858 -71588314 + (CCG)n Simple_repeat Simple_repeat 3 83 0 7 985 183 80 0 0 chr9 52488048 52488073 -71588099 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 7 985 348 256 13 0 chr9 52489295 52489373 -71586799 + ID4 SINE ID 1 79 -4 7 985 29 0 0 0 chr9 52490635 52490664 -71585508 + AT_rich Low_complexity Low_complexity 1 29 0 7 985 189 161 210 0 chr9 52490687 52490749 -71585423 - MIR SINE MIR -43 219 145 7 985 804 254 117 0 chr9 52490808 52491005 -71585167 + ID_B1 SINE B4 2 221 -3 7 985 1922 258 28 12 chr9 52491015 52491446 -71584726 + Lx5 LINE L1 6613 7050 0 7 985 1331 178 0 45 chr9 52491537 52491761 -71584411 - B3 SINE B2 -2 214 1 7 985 23 54 0 0 chr9 52492589 52492626 -71583546 + AT_rich Low_complexity Low_complexity 1 37 0 7 985 355 324 119 18 chr9 52492844 52493070 -71583102 + Charlie2b DNA MER1_type 2 250 -2532 7 985 180 97 0 0 chr9 52493130 52493161 -71583011 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 7 985 354 329 21 14 chr9 52493492 52493634 -71582538 + Charlie2b DNA MER1_type 2639 2781 -1 7 985 230 238 78 16 chr9 52493634 52493673 -71582499 + Charlie4 DNA MER1_type 1029 1071 -890 7 985 222 382 8 0 chr9 52493831 52493962 -71582210 + (TATG)n Simple_repeat Simple_repeat 2 133 0 7 985 234 268 12 47 chr9 52493872 52493958 -71582214 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 7 985 6863 52 21 0 chr9 52494010 52494875 -71581297 - RLTR13B1 LTR ERVK 0 893 11 7 985 563 285 209 26 chr9 52494875 52495109 -71581063 - B4 SINE B4 -15 277 1 7 985 211 286 0 0 chr9 52495218 52495274 -71580898 - L2b LINE L2 -1 3374 3319 7 985 1011 317 69 91 chr9 52495724 52496362 -71579810 + MLT1E3 LTR MaLR 1 624 0 7 985 281 245 219 21 chr9 52496379 52496475 -71579697 - MER20 DNA MER1_type -103 116 2 7 985 288 0 0 0 chr9 52496616 52496648 -71579524 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 985 1136 67 0 7 chr9 52496759 52496894 -71579278 + B1_Mus2 SINE Alu 3 136 -11 7 985 264 59 0 0 chr9 52496894 52496928 -71579244 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 985 213 259 16 49 chr9 52497008 52497069 -71579103 - ID4 SINE ID 0 83 25 7 985 750 264 130 55 chr9 52498483 52498736 -71577436 + B4 SINE B4 3 274 -18 7 985 234 255 0 0 chr9 52498757 52498808 -71577364 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 985 29 0 0 0 chr9 52499195 52499224 -71576948 + AT_rich Low_complexity Low_complexity 1 29 0 7 985 350 314 54 64 chr9 52499706 52499910 -71576262 - LTR16C LTR ERVL 0 489 288 7 985 367 362 89 33 chr9 52500161 52500375 -71575797 - LTR78 LTR ERV1 -767 537 312 1 985 9422 30 23 12 chr9 52500651 52504110 -71572062 - L1Md_T LINE L1 0 6582 441 2 985 247 333 64 18 chr9 52504623 52504733 -71571439 + MIRc SINE MIR 31 145 -123 3 985 206 352 57 0 chr9 52507825 52507913 -71568259 + MIRb SINE MIR 15 107 -161 4 985 210 91 0 0 chr9 52508565 52508598 -71567574 + (AGGTG)n Simple_repeat Simple_repeat 1 33 0 5 985 714 97 10 10 chr9 52509794 52509898 -71566274 - Lx2 LINE L1 -1188 5809 5706 6 985 5661 101 23 13 chr9 52509900 52510681 -71565491 - Lx LINE L1 -2 6652 5864 7 985 5207 97 124 4 chr9 52510676 52511539 -71564633 + L1_Mus4 LINE L1 5804 6636 0 8 985 1092 119 0 0 chr9 52511547 52511715 -71564457 + (GA)n Simple_repeat Simple_repeat 2 169 0 9 985 195 196 35 58 chr9 52512760 52512855 -71563317 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 1 985 255 61 0 0 chr9 52512855 52512888 -71563284 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1 985 195 196 35 58 chr9 52512888 52512965 -71563207 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 1 985 1081 286 54 10 chr9 52514248 52514658 -71561514 - L1M4c LINE L1 -1491 4885 4458 1 985 810 288 61 0 chr9 52514723 52514921 -71561251 - ID_B1 SINE B4 -4 220 11 1 985 1489 281 239 12 chr9 52514934 52515886 -71560286 - L1M4c LINE L1 -1978 4398 3230 1 985 697 158 0 14 chr9 52515886 52516027 -71560145 + CT-rich Low_complexity Low_complexity 1 139 0 1 985 2843 105 9 33 chr9 52516077 52516502 -71559670 - Lx LINE L1 -1 6653 6239 1 985 4821 78 9 28 chr9 52516502 52517192 -71558980 + Lx LINE L1 5552 6228 -426 1 985 347 271 48 32 chr9 52517196 52517322 -71558850 - L1M4c LINE L1 -3144 3238 3111 1 985 1246 286 85 26 chr9 52517336 52517960 -71558212 - L1M4c LINE L1 -3380 2996 2328 1 985 766 78 17 0 chr9 52517960 52518075 -71558097 + (TC)n Simple_repeat Simple_repeat 2 118 0 1 985 509 280 53 26 chr9 52518075 52518176 -71557996 - L1M4c LINE L1 -4057 2327 2226 1 985 275 246 0 0 chr9 52518176 52518233 -71557939 - L1M5 LINE L1 -680 5444 5388 1 985 188 182 99 70 chr9 52518293 52518364 -71557808 + L4 LINE RTE 1075 1147 -882 1 985 379 332 182 17 chr9 52519740 52519976 -71556196 - MLT1J1 LTR MaLR -161 283 9 2 985 8404 196 80 91 chr9 52520543 52520938 -71555234 - Lx7 LINE L1 0 7696 7363 2 985 180 77 0 0 chr9 52520938 52520964 -71555208 + (CAGAGA)n Simple_repeat Simple_repeat 1 26 0 2 985 8404 196 80 91 chr9 52520964 52521481 -71554691 - Lx7 LINE L1 -334 7362 6838 2 985 694 0 0 23 chr9 52521481 52521569 -71554603 + (TTC)n Simple_repeat Simple_repeat 3 88 0 2 985 8404 189 70 65 chr9 52521569 52522879 -71553293 - Lx7 LINE L1 -859 6837 5492 2 985 229 143 0 0 chr9 52522905 52522940 -71553232 - L1Md_F3 LINE L1 -669 5915 5881 2 985 2284 106 14 22 chr9 52522935 52523294 -71552878 + Lx2A LINE L1 6621 6976 -32 2 985 26 30 0 0 chr9 52523863 52523896 -71552276 + AT_rich Low_complexity Low_complexity 1 33 0 2 985 309 353 10 9 chr9 52524184 52524324 -71551848 - MIRb SINE MIR -129 147 7 2 985 1525 296 87 46 chr9 52524947 52525824 -71550348 + L1MC1 LINE L1 5371 6283 -50 2 985 279 263 12 84 chr9 52526428 52526511 -71549661 + ID4_ SINE ID 2 78 -5 2 985 653 217 8 8 chr9 52526830 52526951 -71549221 - ID_B1 SINE B4 -20 204 84 3 985 426 39 0 0 chr9 52528258 52528310 -71547862 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 985 1083 291 7 4 chr9 52528485 52528758 -71547414 - B4 SINE B4 -18 274 1 3 985 597 197 117 25 chr9 52529446 52529566 -71546606 + B1_Mur3 SINE Alu 2 132 -17 3 985 1813 224 39 25 chr9 52529687 52530095 -71546077 - MTD LTR MaLR 0 419 6 3 985 564 111 0 0 chr9 52530853 52530952 -71545220 + (TGAG)n Simple_repeat Simple_repeat 1 99 0 3 985 833 177 17 0 chr9 52530957 52531117 -71545055 - B2_Mm2 SINE B2 -24 174 1 3 985 943 279 84 34 chr9 52532612 52532935 -71543237 + MER2 DNA MER2_type 6 344 -1 3 985 570 98 0 0 chr9 52534482 52534564 -71541608 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 985 1120 146 126 34 chr9 52534627 52534833 -71541339 - URR1B DNA MER1_type 0 225 1 3 985 451 215 11 0 chr9 52536104 52536281 -71539891 + CT-rich Low_complexity Low_complexity 2 180 0 4 985 180 0 0 0 chr9 52536585 52536605 -71539567 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 985 459 0 0 0 chr9 52537371 52537422 -71538750 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 985 270 0 0 0 chr9 52537444 52537474 -71538698 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 985 276 30 0 0 chr9 52537548 52537581 -71538591 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 985 24 67 0 0 chr9 52537975 52538020 -71538152 + AT_rich Low_complexity Low_complexity 1 45 0 4 985 776 141 8 8 chr9 52538080 52538202 -71537970 - B1_Mur4 SINE Alu -7 143 22 4 985 23 0 0 0 chr9 52539083 52539106 -71537066 + AT_rich Low_complexity Low_complexity 1 23 0 4 985 515 397 61 45 chr9 52539274 52539701 -71536471 + LTR33A LTR ERVL 17 450 -70 4 985 234 0 0 0 chr9 52539992 52540018 -71536154 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 985 240 226 151 0 chr9 52540515 52540568 -71535604 - ID2 SINE ID -20 63 3 5 985 279 79 0 0 chr9 52540671 52540709 -71535463 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 5 985 280 323 21 0 chr9 52541069 52541162 -71535010 + MLT1I LTR MaLR 307 401 -10 5 985 1148 76 28 0 chr9 52541542 52541686 -71534486 + B1_Mus1 SINE Alu 1 148 0 5 985 416 258 380 0 chr9 52542256 52542414 -71533758 + ID_B1 SINE B4 6 223 -1 5 985 315 0 0 0 chr9 52542600 52542635 -71533537 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 985 293 297 53 27 chr9 52542695 52542882 -71533290 + L1M5 LINE L1 3382 3573 -2573 5 985 321 339 22 28 chr9 52542924 52543103 -71533069 + L1M5 LINE L1 5032 5209 -937 5 985 631 258 99 32 chr9 52543245 52543737 -71532435 + L1MD LINE L1 5256 5820 -513 5 985 715 220 7 22 chr9 52543816 52543951 -71532221 - B1_Mur3 SINE Alu -7 142 10 5 985 339 108 321 18 chr9 52543953 52544065 -71532107 - B2_Mm2 SINE B2 -3 192 47 5 985 1413 84 11 0 chr9 52544096 52544274 -71531898 - B2_Mm1t SINE B2 -13 180 1 6 985 1242 261 87 6 chr9 52544878 52545213 -71530959 + MTEb LTR MaLR 18 379 0 6 985 613 200 88 0 chr9 52545433 52545544 -71530628 + B1F1 SINE Alu 7 119 -30 6 985 522 0 0 0 chr9 52545544 52545602 -71530570 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 6 985 613 200 88 0 chr9 52545602 52545615 -71530557 + B1F1 SINE Alu 120 141 -8 6 985 249 33 0 0 chr9 52545634 52545664 -71530508 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 985 289 318 96 44 chr9 52546209 52546344 -71529828 - L2b LINE L2 -19 3356 3215 6 985 300 307 105 59 chr9 52547961 52548200 -71527972 - MIRc SINE MIR -17 251 2 6 985 375 270 84 64 chr9 52548301 52548566 -71527606 - MTE2b LTR MaLR -14 365 90 6 985 282 260 73 0 chr9 52548766 52548862 -71527310 + L1MEd LINE L1 36 138 -5981 6 985 288 212 0 0 chr9 52549252 52549318 -71526854 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 6 985 326 123 18 0 chr9 52549713 52549770 -71526402 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 7 985 364 359 13 19 chr9 52550370 52550529 -71525643 + MIR3 SINE MIR 21 178 -30 7 985 509 110 12 0 chr9 52550763 52550845 -71525327 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 7 985 808 234 93 5 chr9 52550860 52551053 -71525119 - B3 SINE B2 -6 210 1 7 985 487 196 98 0 chr9 52551446 52551589 -71524583 - Lx9 LINE L1 -1 7643 7487 7 985 270 0 0 0 chr9 52551595 52551625 -71524547 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 985 1787 202 52 43 chr9 52551635 52552058 -71524114 - Lx9 LINE L1 -220 7424 6998 7 985 747 258 86 0 chr9 52552165 52552351 -71523821 - ID_B1 SINE B4 -19 205 4 7 985 386 315 13 53 chr9 52552487 52552638 -71523534 - RMER10B LTR ERVL -7 391 247 7 985 304 315 17 69 chr9 52553085 52553201 -71522971 - MER63D DNA AcHobo -680 381 272 7 985 234 359 134 22 chr9 52553357 52553547 -71522625 - MIR SINE MIR -48 220 7 7 985 369 62 0 0 chr9 52553714 52553762 -71522410 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 985 356 388 56 43 chr9 52553934 52554236 -71521936 - MLT1N2 LTR MaLR -10 552 247 8 985 192 283 16 20 chr9 52555981 52556077 -71520095 + L2b LINE L2 3227 3343 -44 8 985 281 287 65 54 chr9 52556136 52556285 -71519887 + MIRb SINE MIR 88 253 -15 8 985 1176 84 6 11 chr9 52556957 52557138 -71519034 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 8 123 36078 36 0 0 chr9 52557834 52563250 -71512922 + L1Md_T LINE L1 77 5589 -297 8 986 9116 8 0 0 chr9 52563250 52564246 -71511926 + L1Md_T LINE L1 5590 6585 0 8 986 1420 66 0 22 chr9 52564796 52564981 -71511191 - B2_Mm2 SINE B2 -14 181 1 8 986 447 153 22 56 chr9 52565012 52565102 -71511070 + U6 snRNA snRNA 1 87 -20 8 986 804 213 24 0 chr9 52565123 52565292 -71510880 + Lx7 LINE L1 7524 7696 0 8 986 25 31 0 0 chr9 52565292 52565324 -71510848 + AT_rich Low_complexity Low_complexity 1 32 0 8 986 608 320 81 54 chr9 52565332 52565608 -71510564 + L1MA4 LINE L1 5501 5789 -523 9 986 306 73 0 0 chr9 52565608 52565649 -71510523 + (TATG)n Simple_repeat Simple_repeat 3 43 0 9 986 608 323 86 51 chr9 52565649 52565828 -71510344 + L1MA4 LINE L1 5790 5992 -320 9 986 217 200 0 22 chr9 52565915 52565961 -71510211 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 986 905 248 25 10 chr9 52565961 52566161 -71510011 - B3 SINE B2 -13 203 1 9 986 202 224 0 20 chr9 52566196 52566246 -71509926 + GA-rich Low_complexity Low_complexity 4 52 0 9 986 386 294 0 78 chr9 52566389 52566518 -71509654 - PB1D9 SINE Alu -1 119 1 9 986 1913 42 58 0 chr9 52567052 52567293 -71508879 + L1Md_F3 LINE L1 6330 6584 0 9 986 568 207 9 42 chr9 52568595 52568762 -71507410 - RMER20B LTR ERVK -356 160 1 9 986 218 191 0 0 chr9 52568812 52568854 -71507318 + (TTAGGG)n Simple_repeat Simple_repeat 4 45 0 9 986 864 237 61 0 chr9 52568854 52569052 -71507120 + ID_B1 SINE B4 1 210 -14 9 986 363 44 0 0 chr9 52569052 52569097 -71507075 + (ATTG)n Simple_repeat Simple_repeat 3 47 0 1 986 605 286 0 0 chr9 52570463 52570603 -71505569 + RSINE1 SINE B4 14 153 -12 1 986 459 0 0 0 chr9 52570636 52570687 -71505485 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 986 683 54 0 11 chr9 52571813 52571906 -71504266 + (TCC)n Simple_repeat Simple_repeat 2 93 0 1 986 460 279 15 8 chr9 52571907 52572037 -71504135 - B3A SINE B2 -67 131 1 1 986 1059 130 0 0 chr9 52572414 52572583 -71503589 + (TC)n Simple_repeat Simple_repeat 1 169 0 1 986 256 289 188 24 chr9 52574281 52574451 -71501721 - MLT1C LTR MaLR -264 203 6 1 986 509 206 20 5 chr9 52574507 52574716 -71501456 + (TA)n Simple_repeat Simple_repeat 1 212 0 1 986 228 317 64 55 chr9 52574840 52575060 -71501112 - L1M5 LINE L1 -591 5573 5352 1 986 450 0 0 0 chr9 52576148 52576198 -71499974 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 986 235 378 0 0 chr9 52576817 52576907 -71499265 - MLT1L LTR MaLR -141 469 380 1 986 207 398 0 0 chr9 52576922 52577098 -71499074 + (CATGT)n Simple_repeat Simple_repeat 5 180 0 1 986 1185 119 17 6 chr9 52577396 52577574 -71498598 + B2_Mm2 SINE B2 2 181 -14 1 986 1566 197 73 13 chr9 52577695 52578090 -71498082 + MTD LTR MaLR 1 419 0 1 986 533 93 29 2 chr9 52578793 52578880 -71497292 - Lx3_Mus LINE L1 -1698 5775 5688 1 986 3199 100 63 0 chr9 52578880 52579342 -71496830 + Lx3_Mus LINE L1 6519 7009 0 1 986 21 36 0 0 chr9 52579486 52579514 -71496658 + AT_rich Low_complexity Low_complexity 1 28 0 1 986 253 221 78 44 chr9 52579537 52579627 -71496545 - MIR SINE MIR -44 218 126 1 986 1320 302 102 35 chr9 52579814 52580876 -71495296 + L1MA6 LINE L1 4628 5817 -483 1 986 567 0 0 0 chr9 52580876 52580939 -71495233 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 986 1320 282 104 36 chr9 52580939 52581195 -71494977 + L1MA6 LINE L1 5818 6083 -217 1 986 288 250 16 0 chr9 52581260 52581324 -71494848 + BC1_Mm scRNA scRNA 14 78 -74 1 986 426 114 0 0 chr9 52581642 52581721 -71494451 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 1 986 839 102 8 0 chr9 52581721 52581849 -71494323 + (AGGGGG)n Simple_repeat Simple_repeat 6 134 0 1 986 198 290 48 0 chr9 52582228 52582290 -71493882 - L2b LINE L2 -25 3350 3286 1 986 353 251 38 45 chr9 52582561 52582696 -71493476 + B1F1 SINE Alu 6 135 -12 1 986 795 86 9 0 chr9 52582696 52582812 -71493360 + ORR1A2 LTR MaLR 1 117 -210 1 986 344 132 0 0 chr9 52582810 52582863 -71493309 + ORR1A2 LTR MaLR 294 346 0 1 986 23 0 0 0 chr9 52582868 52582891 -71493281 + AT_rich Low_complexity Low_complexity 1 23 0 1 986 194 121 29 29 chr9 52583128 52583196 -71492976 + A-rich Low_complexity Low_complexity 3 70 0 1 986 1037 71 42 14 chr9 52583301 52583444 -71492728 + B1_Mm SINE Alu 1 147 0 1 986 368 36 0 51 chr9 52583444 52583503 -71492669 + (A)n Simple_repeat Simple_repeat 1 56 0 1 986 195 173 0 0 chr9 52583589 52583641 -71492531 + CT-rich Low_complexity Low_complexity 1 52 0 1 986 243 79 0 0 chr9 52583641 52583679 -71492493 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 986 556 306 30 24 chr9 52583718 52583746 -71492426 + B3A SINE B2 18 45 -153 1 986 231 61 0 0 chr9 52583746 52583779 -71492393 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 986 556 298 25 95 chr9 52583779 52583950 -71492222 + B3A SINE B2 46 202 -14 1 986 26 64 0 0 chr9 52583983 52584030 -71492142 + AT_rich Low_complexity Low_complexity 1 47 0 1 986 607 12 25 0 chr9 52584479 52584559 -71491613 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1 986 296 305 45 45 chr9 52584692 52584891 -71491281 + L1M4c LINE L1 616 814 -5793 1 986 514 334 88 31 chr9 52584888 52585559 -71490613 + L1M4c LINE L1 1156 1864 -4885 1 986 309 305 32 0 chr9 52585573 52585668 -71490504 + PB1D10 SINE Alu 13 110 -7 1 986 855 224 61 10 chr9 52585672 52585870 -71490302 + B3 SINE B2 9 216 0 1 986 282 247 14 0 chr9 52585916 52585989 -71490183 + L1M4c LINE L1 1859 1932 -4817 1 986 25 0 0 0 chr9 52586007 52586032 -71490140 + AT_rich Low_complexity Low_complexity 1 25 0 1 986 433 274 63 87 chr9 52586448 52586748 -71489424 + L1M4c LINE L1 5580 5872 -875 1 986 2195 92 72 0 chr9 52586752 52587057 -71489115 - ORR1A2 LTR MaLR 0 327 1 1 986 223 304 0 0 chr9 52587097 52587153 -71489019 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 986 4162 169 89 20 chr9 52587193 52588037 -71488135 + RMER19B LTR ERVK 1 902 0 1 986 370 203 129 27 chr9 52588116 52588263 -71487909 + L1MB4 LINE L1 6016 6177 -3 1 986 334 281 65 55 chr9 52588424 52588714 -71487458 + L1MEc LINE L1 878 1170 -5230 1 986 1119 285 125 53 chr9 52589152 52590086 -71486086 + L1MC4a LINE L1 6804 7804 -78 1 986 1073 162 75 19 chr9 52590089 52590303 -71485869 + RMER19B LTR ERVK 463 688 -214 1 986 306 284 0 12 chr9 52591998 52592080 -71484092 + ID4_ SINE ID 2 82 -1 1 986 251 203 122 0 chr9 52594251 52594325 -71481847 + L1MA5 LINE L1 6195 6277 -23 1 986 398 324 81 12 chr9 52594347 52594519 -71481653 + B3A SINE B2 1 184 -14 1 986 596 292 32 11 chr9 52594590 52594781 -71481391 + B3A SINE B2 2 192 -24 1 986 269 109 18 0 chr9 52596595 52596650 -71479522 + (TTG)n Simple_repeat Simple_repeat 2 57 0 1 986 1068 123 0 0 chr9 52596677 52596823 -71479349 - B1_Mus1 SINE Alu -2 146 1 1 986 902 268 115 37 chr9 52596908 52597230 -71478942 - Lx8 LINE L1 -281 7192 6846 1 986 304 285 78 1 chr9 52598068 52598237 -71477935 + MER112 DNA MER1_type 5 187 -74 1 986 355 305 57 0 chr9 52598406 52598511 -71477661 + Lx8 LINE L1 7164 7274 -199 1 986 201 221 0 0 chr9 52598625 52598693 -71477479 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 986 382 306 94 80 chr9 52599464 52599688 -71476484 - MLT1N2 LTR MaLR -335 227 1 1 986 531 313 40 7 chr9 52600511 52600659 -71475513 + ID_B1 SINE B4 28 180 -44 1 986 180 0 0 0 chr9 52600697 52600717 -71475455 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 986 405 306 7 36 chr9 52601537 52601676 -71474496 + ID_B1 SINE B4 82 216 -8 1 986 207 0 0 0 chr9 52601680 52601703 -71474469 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 986 298 269 0 0 chr9 52601710 52601796 -71474376 + ID2 SINE ID 9 94 -58 1 986 212 86 29 0 chr9 52601813 52601848 -71474324 + (GGA)n Simple_repeat Simple_repeat 1 36 0 1 986 432 306 164 62 chr9 52602367 52602611 -71473561 + B4A SINE B4 21 289 -3 1 986 582 272 12 41 chr9 52603495 52603664 -71472508 - RSINE1 SINE B4 0 165 2 1 986 1018 282 119 3 chr9 52603800 52604188 -71471984 + MER82 DNA MER2_type 31 463 -190 1 986 540 0 0 0 chr9 52604413 52604473 -71471699 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1 986 434 159 0 0 chr9 52604860 52604929 -71471243 + Lx9 LINE L1 7411 7479 -165 1 986 441 54 0 0 chr9 52604930 52604986 -71471186 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1 986 466 268 21 21 chr9 52605780 52605930 -71470242 + B4A SINE B4 2 143 -149 1 986 294 95 0 0 chr9 52606021 52606063 -71470109 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 986 255 130 0 0 chr9 52606942 52606996 -71469176 + (T)n Simple_repeat Simple_repeat 1 54 0 1 986 288 0 0 0 chr9 52608635 52608667 -71467505 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 986 747 70 0 0 chr9 52611591 52611691 -71464481 - B1_Mm SINE Alu -47 100 1 1 986 246 95 0 0 chr9 52611697 52611739 -71464433 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 1 986 311 359 73 69 chr9 52612059 52612481 -71463691 - L1ME3A LINE L1 -26 6147 5724 1 986 389 358 185 18 chr9 52612915 52613256 -71462916 + L1MC4a LINE L1 5577 5974 -1908 1 986 202 222 18 36 chr9 52613256 52613312 -71462860 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 1 986 273 29 0 0 chr9 52613691 52613725 -71462447 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 986 333 0 0 0 chr9 52613725 52613761 -71462411 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 986 417 261 17 0 chr9 52614074 52614189 -71461983 - MER2 DNA MER2_type -102 243 127 1 986 232 221 110 39 chr9 52614881 52615008 -71461164 + L1MC5 LINE L1 7302 7437 -524 1 986 515 356 54 30 chr9 52615293 52615626 -71460546 - L1MEg LINE L1 -1212 4934 4594 1 986 1047 224 37 21 chr9 52615951 52616193 -71459979 - MTD LTR MaLR -56 363 118 1 986 349 230 170 33 chr9 52616215 52616368 -71459804 - B2_Mm2 SINE B2 -20 175 2 1 986 360 0 0 0 chr9 52616605 52616645 -71459527 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 986 410 254 25 50 chr9 52616764 52616884 -71459288 - B4 SINE B4 -169 123 7 1 986 242 292 101 9 chr9 52616891 52617109 -71459063 - L1MEg LINE L1 -5013 1229 992 1 986 295 405 6 0 chr9 52618326 52618494 -71457678 + (TG)n Simple_repeat Simple_repeat 2 170 0 1 986 422 350 6 24 chr9 52618498 52618665 -71457507 - RSINE1 SINE B4 -1 164 1 1 986 22 0 0 0 chr9 52618864 52618886 -71457286 + AT_rich Low_complexity Low_complexity 1 22 0 1 986 295 292 0 14 chr9 52619044 52619117 -71457055 + B1_Mus2 SINE Alu 50 121 -26 1 986 189 0 0 0 chr9 52619139 52619160 -71457012 + (T)n Simple_repeat Simple_repeat 1 21 0 1 986 8001 37 1 4 chr9 52619410 52620498 -71455674 - L1Md_F2 LINE L1 -1 6581 5495 1 986 288 0 0 0 chr9 52620856 52620888 -71455284 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 986 406 223 158 65 chr9 52620888 52621023 -71455149 - B3A SINE B2 -46 152 5 1 986 235 211 18 0 chr9 52621073 52621130 -71455042 + L1MC LINE L1 4553 4610 -1536 1 986 323 315 43 71 chr9 52621453 52621593 -71454579 + RSINE1 SINE B4 2 137 -28 1 986 294 125 0 0 chr9 52621602 52621650 -71454522 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 986 1248 259 51 123 chr9 52621759 52622362 -71453810 - RMER1C Other Other -40 1302 743 1 986 497 342 13 13 chr9 52622390 52622544 -71453628 + RSINE1 SINE B4 8 161 -4 2 986 1138 75 0 0 chr9 52622951 52623098 -71453074 + B1_Mus2 SINE Alu 1 147 0 2 986 483 63 0 0 chr9 52623099 52623162 -71453010 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 2 986 675 267 58 19 chr9 52625890 52626096 -71450076 - ID_B1 SINE B4 -9 215 2 2 986 337 317 95 42 chr9 52626737 52626905 -71449267 - MIR SINE MIR -10 252 76 2 986 31 0 0 0 chr9 52628116 52628147 -71448025 + AT_rich Low_complexity Low_complexity 1 31 0 2 986 207 225 0 0 chr9 52628159 52628199 -71447973 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 986 380 20 20 0 chr9 52628210 52628259 -71447913 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 986 275 265 142 39 chr9 52628847 52629051 -71447121 + L1M3e LINE L1 1883 2107 -4923 2 986 189 0 0 0 chr9 52629060 52629081 -71447091 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 2 986 875 207 12 17 chr9 52629097 52629269 -71446903 + B3 SINE B2 2 172 -44 2 986 21 0 0 0 chr9 52629310 52629331 -71446841 + AT_rich Low_complexity Low_complexity 1 21 0 2 986 30 0 0 0 chr9 52629346 52629376 -71446796 + AT_rich Low_complexity Low_complexity 1 30 0 2 986 576 0 0 0 chr9 52630226 52630290 -71445882 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 986 234 272 44 97 chr9 52631801 52631915 -71444257 - Arthur1A DNA Tip100 -16 161 54 2 986 357 320 55 91 chr9 52632215 52632490 -71443682 - ORR1E LTR MaLR -94 265 1 2 986 4758 16 0 0 chr9 52633080 52633639 -71442533 + MERVL-int LTR ERVL 1376 1934 -3551 2 986 650 260 47 61 chr9 52633720 52633933 -71442239 + B3 SINE B2 1 210 -6 2 986 201 250 26 13 chr9 52633974 52634051 -71442121 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 2 986 1224 34 0 20 chr9 52635451 52635600 -71440572 + B1_Mus1 SINE Alu 3 148 0 2 986 195 42 0 0 chr9 52635601 52635625 -71440547 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2 986 964 302 67 79 chr9 52635640 52636057 -71440115 - MLT2B1 LTR ERVL -108 412 1 2 986 249 308 0 13 chr9 52636702 52636781 -71439391 + GA-rich Low_complexity Low_complexity 2 79 0 2 986 796 111 15 0 chr9 52637015 52637150 -71439022 + (TC)n Simple_repeat Simple_repeat 1 137 0 2 986 333 0 0 0 chr9 52637150 52637187 -71438985 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 986 207 152 0 0 chr9 52637699 52637745 -71438427 + A-rich Low_complexity Low_complexity 1 46 0 2 986 374 354 15 0 chr9 52639045 52639240 -71436932 - L1M5 LINE L1 -472 5701 5504 2 986 476 353 50 70 chr9 52639242 52639626 -71436546 - L1M5 LINE L1 -372 5801 5426 2 986 570 54 0 0 chr9 52639647 52639721 -71436451 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 2 986 614 176 0 0 chr9 52639727 52639829 -71436343 - B3A SINE B2 -53 145 44 2 986 289 272 37 65 chr9 52639912 52640128 -71436044 - L1M5 LINE L1 -825 5321 5112 2 986 336 293 134 14 chr9 52640153 52640444 -71435728 - L1MD LINE L1 -1799 4347 4022 2 986 979 294 111 13 chr9 52640885 52641509 -71434663 + L1MA4A LINE L1 4793 5440 -440 2 986 192 40 0 0 chr9 52641509 52641534 -71434638 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 986 687 299 114 50 chr9 52641534 52641884 -71434288 + L1MA4A LINE L1 5434 5841 -462 2 986 552 353 6 6 chr9 52642512 52642669 -71433503 + RSINE1 SINE B4 3 159 -6 2 986 584 27 14 0 chr9 52642672 52642746 -71433426 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 986 572 225 50 43 chr9 52642909 52643170 -71433002 + Lx4B LINE L1 6690 7050 -8 2 986 22 0 0 0 chr9 52643170 52643192 -71432980 + AT_rich Low_complexity Low_complexity 1 22 0 2 986 336 380 68 10 chr9 52644836 52645043 -71431129 - L2 LINE L2 -3117 302 84 2 986 966 68 0 83 chr9 52645063 52645208 -71430964 + B1_Mm SINE Alu 1 133 -14 2 986 246 301 87 10 chr9 52645839 52645943 -71430229 - L1M5 LINE L1 -524 5649 5538 2 986 218 318 135 45 chr9 52646070 52646248 -71429924 + L2a LINE L2 3231 3424 -2 2 986 232 271 24 0 chr9 52647036 52647121 -71429051 + L1_Mur3 LINE L1 730 816 -6896 2 986 914 262 76 60 chr9 52647240 52647665 -71428507 - L1M3 LINE L1 -2483 3657 3233 2 986 1171 62 0 7 chr9 52647665 52647812 -71428360 - B1_Mm SINE Alu 0 147 2 2 986 914 262 76 60 chr9 52647812 52648019 -71428153 - L1M3 LINE L1 -2908 3232 3015 2 986 248 345 32 81 chr9 52648037 52648160 -71428012 + MTEa LTR MaLR 23 139 -240 2 986 238 273 87 43 chr9 52648306 52648421 -71427751 + MT2A LTR ERVL 343 462 -71 2 986 298 241 44 9 chr9 52648456 52648569 -71427603 - L1M3 LINE L1 -3118 3025 2909 2 986 302 302 130 29 chr9 52648574 52648881 -71427291 + L1M3 LINE L1 3991 4331 -1812 2 986 258 241 36 0 chr9 52649203 52649286 -71426886 + L1MD2 LINE L1 6270 6355 -4 2 986 208 121 0 0 chr9 52649957 52649990 -71426182 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 986 888 40 8 0 chr9 52650020 52650145 -71426027 + MusHAL1 LINE L1 654 779 -1933 2 986 1928 41 0 70 chr9 52650146 52650253 -71425919 - Lx3_Mus LINE L1 -509 6500 6410 2 986 207 0 0 0 chr9 52650253 52650276 -71425896 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 986 1131 49 7 7 chr9 52650276 52650420 -71425752 - B1_Mm SINE Alu -2 145 2 2 986 1928 41 0 70 chr9 52650420 52650597 -71425575 - Lx3_Mus LINE L1 -600 6409 6236 2 986 1393 87 0 19 chr9 52650595 52650806 -71425366 + MusHAL1 LINE L1 920 1126 -1586 2 986 1745 266 37 52 chr9 52650899 52651740 -71424432 - L1_Rod LINE L1 -1222 4625 3798 2 986 215 173 0 55 chr9 52651740 52651795 -71424377 + A-rich Low_complexity Low_complexity 4 55 0 2 986 291 191 33 11 chr9 52651796 52651886 -71424286 + Lx9 LINE L1 7534 7625 -19 2 986 468 260 21 0 chr9 52652099 52652195 -71423977 - B1_Mus2 SINE Alu -47 100 3 2 986 183 80 0 0 chr9 52652236 52652261 -71423911 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 986 964 223 60 170 chr9 52653006 52653406 -71422766 + MTE2a LTR MaLR 1 356 -23 2 986 189 107 0 0 chr9 52653654 52653682 -71422490 + (T)n Simple_repeat Simple_repeat 1 28 0 2 986 246 336 150 8 chr9 52653870 52653990 -71422182 - MLT1J1 LTR MaLR -206 238 102 2 986 817 307 58 15 chr9 52654274 52654535 -71421637 - B4 SINE B4 -20 272 1 2 986 7312 64 8 13 chr9 52654964 52656512 -71419660 + L1_Mus2 LINE L1 5021 6565 -1 2 986 549 270 9 0 chr9 52656630 52656741 -71419431 + RSINE1 SINE B4 14 125 -40 2 986 410 53 18 0 chr9 52656755 52656812 -71419360 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 986 459 122 0 0 chr9 52656812 52656902 -71419270 + (GA)n Simple_repeat Simple_repeat 1 90 0 2 986 971 217 6 0 chr9 52657061 52657241 -71418931 + MTD LTR MaLR 1 181 -238 2 986 1822 130 80 0 chr9 52657247 52657546 -71418626 + IAPEY2_LTR LTR ERVK 35 357 0 2 986 1147 227 33 21 chr9 52657546 52657789 -71418383 + MTD LTR MaLR 174 419 0 2 986 21 95 0 0 chr9 52659360 52659423 -71416749 + AT_rich Low_complexity Low_complexity 1 63 0 2 986 1736 195 60 128 chr9 52659630 52660445 -71415727 + RMER19B LTR ERVK 1 902 0 2 986 477 0 0 0 chr9 52660447 52660500 -71415672 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 986 754 292 35 44 chr9 52660641 52660867 -71415305 - B4A SINE B4 -68 224 1 2 986 354 23 0 0 chr9 52661008 52661051 -71415121 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 986 315 0 0 0 chr9 52661051 52661085 -71415087 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 986 180 0 0 0 chr9 52661085 52661105 -71415067 + (TAG)n Simple_repeat Simple_repeat 2 21 0 2 986 597 268 7 7 chr9 52661146 52661289 -71414883 - ID_B1 SINE B4 0 224 82 2 986 562 109 0 19 chr9 52662080 52662183 -71413989 + (TG)n Simple_repeat Simple_repeat 1 101 0 2 986 411 276 114 53 chr9 52662193 52662457 -71413715 - B4 SINE B4 -12 280 1 2 986 265 183 79 66 chr9 52662627 52662703 -71413469 - MTE2b LTR MaLR 0 379 303 2 986 610 261 178 25 chr9 52663106 52663342 -71412830 + B4 SINE B4 2 273 -19 2 986 417 20 0 0 chr9 52663343 52663393 -71412779 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 986 2861 120 90 10 chr9 52663695 52664184 -71411988 + RLTR11A LTR ERVK 1 528 0 2 986 889 251 57 71 chr9 52664879 52665175 -71410997 + B4A SINE B4 1 292 0 2 986 195 162 0 0 chr9 52665178 52665215 -71410957 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 986 346 133 0 39 chr9 52667323 52667379 -71408793 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 2 986 189 0 0 0 chr9 52667379 52667400 -71408772 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 986 346 133 0 39 chr9 52667400 52667421 -71408751 + (TATATG)n Simple_repeat Simple_repeat 4 24 0 2 986 442 294 79 94 chr9 52667561 52667891 -71408281 + ORR1E LTR MaLR 1 325 -34 2 986 3716 126 78 9 chr9 52669124 52669765 -71406407 + RMER6C LTR ERVK 1 685 -5 2 986 722 295 95 71 chr9 52669998 52670094 -71406078 - RLTR16 LTR ERVK 0 505 415 2 986 402 21 0 0 chr9 52670094 52670141 -71406031 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 986 722 295 95 71 chr9 52670141 52670537 -71405635 - RLTR16 LTR ERVK -91 414 2 2 986 200 35 35 0 chr9 52671551 52671580 -71404592 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2 986 5495 57 1 6 chr9 52672009 52672664 -71403508 - L1Md_F2 LINE L1 0 6582 5931 2 986 232 361 82 58 chr9 52673613 52673990 -71402182 - L2a LINE L2 -2 3424 3039 2 986 476 280 81 114 chr9 52674002 52674300 -71401872 + B4A SINE B4 5 292 0 2 986 231 320 182 60 chr9 52674376 52674761 -71401411 - L2a LINE L2 -471 2948 2517 2 986 181 175 150 0 chr9 52676531 52676571 -71399601 + L2c LINE L2 3321 3366 -21 2 986 435 269 84 39 chr9 52678446 52678624 -71397548 + MER53 DNA hAT 3 188 -5 2 986 276 207 52 60 chr9 52679608 52679705 -71396467 - LTR85a LTR Gypsy? -256 528 346 2 986 314 197 28 0 chr9 52679902 52679973 -71396199 - LTR85a LTR Gypsy? -609 93 21 2 986 205 210 61 123 chr9 52680077 52680191 -71395981 + L2a LINE L2 3312 3418 -8 2 986 483 276 183 13 chr9 52681347 52681659 -71394513 - L1MC4a LINE L1 -663 7219 6855 2 986 474 223 87 0 chr9 52682527 52682630 -71393542 - PB1D7 SINE Alu 0 120 9 3 986 229 233 0 0 chr9 52683055 52683098 -71393074 - tRNA-Ala-GCY_ tRNA tRNA -2 73 31 3 986 693 236 64 35 chr9 52683954 52684125 -71392047 + B3A SINE B2 1 176 -22 3 986 353 247 22 130 chr9 52684126 52684396 -71391776 + Lx9 LINE L1 7404 7644 0 3 986 28 29 0 0 chr9 52684523 52684558 -71391614 + AT_rich Low_complexity Low_complexity 1 35 0 3 986 701 292 82 11 chr9 52685101 52685420 -71390752 - L1MB3 LINE L1 -121 6062 5726 3 986 2741 131 179 18 chr9 52685423 52685927 -71390245 + RMER4B LTR ERVK 1 585 0 3 986 491 267 199 0 chr9 52685955 52686101 -71390071 - B3 SINE B2 -41 175 1 3 986 573 252 13 25 chr9 52686108 52686267 -71389905 - L1M3 LINE L1 -387 5784 5628 3 986 232 347 13 0 chr9 52686318 52686393 -71389779 + ID4_ SINE ID 5 80 -3 3 986 618 260 92 59 chr9 52686608 52686973 -71389199 + ORR1E LTR MaLR 3 368 -2 3 986 336 280 172 7 chr9 52686979 52687130 -71389042 + L1M5 LINE L1 2736 2911 -3235 3 986 6317 78 75 96 chr9 52687106 52687644 -71388528 + L1Md_Gf LINE L1 40 617 -5905 3 986 227 316 59 59 chr9 52687644 52687745 -71388427 + RLTR45 LTR ERVK 4 104 -378 3 986 6317 78 75 96 chr9 52687745 52688232 -71387940 + L1Md_Gf LINE L1 618 1142 -5380 3 123 36593 37 0 1 chr9 52688198 52692586 -71383586 + L1_Mm LINE L1 1203 5586 -297 3 987 9565 3 0 2 chr9 52692586 52693584 -71382588 + L1Md_A LINE L1 5587 6582 0 3 987 3789 16 0 0 chr9 52693584 52694010 -71382162 + L1Md_T LINE L1 5161 5586 -297 3 987 8970 35 0 0 chr9 52694010 52695006 -71381166 + L1Md_T LINE L1 5587 6582 0 3 987 297 215 56 62 chr9 52695010 52695154 -71381018 + L1M5 LINE L1 2896 3038 -3108 3 987 306 207 344 32 chr9 52695175 52695300 -71380872 + RSINE1 SINE B4 2 165 0 3 987 207 0 0 0 chr9 52695311 52695334 -71380838 + (CAG)n Simple_repeat Simple_repeat 2 24 0 3 987 436 314 122 35 chr9 52695465 52695719 -71380453 + B4A SINE B4 1 276 -16 3 987 473 337 88 21 chr9 52695892 52696086 -71380086 + MER58B DNA MER1_type 3 209 -132 3 987 734 218 105 6 chr9 52696231 52696402 -71379770 + B3 SINE B2 1 188 -28 3 987 367 296 122 0 chr9 52696443 52696558 -71379614 + ID_B1 SINE B4 84 208 -16 3 987 569 145 38 0 chr9 52696558 52696689 -71379483 + GA-rich Low_complexity Low_complexity 5 140 0 3 987 532 287 106 4 chr9 52696825 52697080 -71379092 + L1M5 LINE L1 4985 5265 -881 3 987 201 108 0 0 chr9 52697116 52697153 -71379019 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 987 257 240 205 16 chr9 52697155 52697282 -71378890 + L1M5 LINE L1 5320 5470 -770 3 987 351 0 0 0 chr9 52698138 52698177 -71377995 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 987 875 82 0 3 chr9 52698418 52698546 -71377626 + Lx4A LINE L1 5728 5852 -1206 3 987 22 0 0 0 chr9 52698627 52698649 -71377523 + AT_rich Low_complexity Low_complexity 1 22 0 3 987 360 18 53 0 chr9 52698817 52698874 -71377298 + (TTG)n Simple_repeat Simple_repeat 2 61 0 3 987 21 0 0 0 chr9 52699258 52699279 -71376893 + AT_rich Low_complexity Low_complexity 1 21 0 3 987 232 196 68 136 chr9 52699279 52699397 -71376775 + B3A SINE B2 2 111 -87 3 987 204 135 0 0 chr9 52699583 52699620 -71376552 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 987 4736 65 9 3 chr9 52699835 52700417 -71375755 - L1Md_F2 LINE L1 -1 6581 5997 3 987 25 0 0 0 chr9 52702432 52702457 -71373715 + AT_rich Low_complexity Low_complexity 1 25 0 3 987 6941 78 3 0 chr9 52703099 52704023 -71372149 - L1Md_A LINE L1 -2219 3664 2738 3 987 15368 60 0 1 chr9 52704019 52705933 -71370239 + L1Md_A LINE L1 3675 5586 -297 3 987 8702 45 0 1 chr9 52705934 52706930 -71369242 + L1Md_A LINE L1 5588 6582 0 3 987 297 215 56 62 chr9 52706934 52707078 -71369094 + L1M5 LINE L1 2896 3038 -3108 3 987 306 207 344 32 chr9 52707099 52707224 -71368948 + RSINE1 SINE B4 2 165 0 3 987 207 0 0 0 chr9 52707235 52707258 -71368914 + (CAG)n Simple_repeat Simple_repeat 2 24 0 3 987 436 314 122 35 chr9 52707389 52707643 -71368529 + B4A SINE B4 1 276 -16 3 987 473 337 88 21 chr9 52707816 52708010 -71368162 + MER58B DNA MER1_type 3 209 -132 3 987 734 218 105 6 chr9 52708155 52708326 -71367846 + B3 SINE B2 1 188 -28 3 987 367 296 122 0 chr9 52708367 52708482 -71367690 + ID_B1 SINE B4 84 208 -16 3 987 569 145 38 0 chr9 52708482 52708613 -71367559 + GA-rich Low_complexity Low_complexity 5 140 0 3 987 532 287 106 4 chr9 52708749 52709004 -71367168 + L1M5 LINE L1 4985 5265 -881 3 987 201 108 0 0 chr9 52709040 52709077 -71367095 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 987 257 240 205 16 chr9 52709079 52709206 -71366966 + L1M5 LINE L1 5320 5470 -770 3 987 351 0 0 0 chr9 52710062 52710101 -71366071 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 987 875 82 0 3 chr9 52710342 52710470 -71365702 + Lx4A LINE L1 5728 5852 -1206 3 987 22 0 0 0 chr9 52710551 52710573 -71365599 + AT_rich Low_complexity Low_complexity 1 22 0 3 987 360 18 53 0 chr9 52710741 52710798 -71365374 + (TTG)n Simple_repeat Simple_repeat 2 61 0 3 987 21 0 0 0 chr9 52711182 52711203 -71364969 + AT_rich Low_complexity Low_complexity 1 21 0 3 987 243 186 68 136 chr9 52711203 52711321 -71364851 + B3A SINE B2 2 111 -87 3 987 204 135 0 0 chr9 52711507 52711544 -71364628 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 987 4736 65 9 3 chr9 52711759 52712341 -71363831 - L1Md_F2 LINE L1 -1 6581 5997 3 987 25 0 0 0 chr9 52714356 52714381 -71361791 + AT_rich Low_complexity Low_complexity 1 25 0 3 987 6941 78 3 0 chr9 52715023 52715947 -71360225 - L1Md_F2 LINE L1 -2219 3664 2738 3 987 15368 60 0 1 chr9 52715943 52717857 -71358315 + L1Md_F2 LINE L1 3675 5586 -297 3 987 8748 37 2 0 chr9 52717858 52718854 -71357318 + L1Md_F2 LINE L1 5588 6582 0 3 987 244 264 134 93 chr9 52718857 52719080 -71357092 + LTR48 LTR ERV1 400 782 -5 3 987 1093 313 122 33 chr9 52719735 52720307 -71355865 + MLT1E LTR MaLR 8 630 -23 3 987 439 119 24 12 chr9 52720416 52720501 -71355671 + GA-rich Low_complexity Low_complexity 2 87 0 3 987 21 0 0 0 chr9 52720583 52720604 -71355568 + AT_rich Low_complexity Low_complexity 1 21 0 3 987 195 42 0 0 chr9 52721459 52721483 -71354689 + (A)n Simple_repeat Simple_repeat 1 24 0 3 987 775 344 25 11 chr9 52722389 52722643 -71353529 + B4 SINE B4 10 269 -23 3 987 405 0 0 0 chr9 52722643 52722688 -71353484 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 987 775 344 25 11 chr9 52722688 52722712 -71353460 + B4 SINE B4 270 292 0 3 987 923 248 14 10 chr9 52722744 52722952 -71353220 + B3 SINE B2 5 213 -3 3 987 725 247 69 49 chr9 52724228 52724432 -71351740 + MTEa LTR MaLR 8 215 -164 3 987 401 210 15 38 chr9 52724432 52724698 -71351474 + CT-rich Low_complexity Low_complexity 1 260 0 3 987 469 250 21 35 chr9 52724698 52724843 -71351329 + MTEa LTR MaLR 202 344 -35 3 987 261 0 0 0 chr9 52726004 52726033 -71350139 + (A)n Simple_repeat Simple_repeat 1 29 0 3 987 253 289 144 0 chr9 52726692 52726796 -71349376 + B4A SINE B4 4 122 -170 3 987 182 303 136 0 chr9 52726812 52726878 -71349294 + MIR SINE MIR 156 230 -32 3 987 371 324 31 57 chr9 52727685 52727878 -71348294 - Lx8 LINE L1 -509 6964 6777 3 987 695 347 32 6 chr9 52727884 52728223 -71347949 + Lx8 LINE L1 6978 7325 -148 3 987 6742 165 98 31 chr9 52728238 52728612 -71347560 - Lx4B LINE L1 -5 7053 6614 3 987 1223 152 33 144 chr9 52728612 52728974 -71347198 - RLTRETN_Mm LTR ERVK 0 322 1 3 987 6742 165 98 31 chr9 52728974 52729410 -71346762 - Lx4B LINE L1 -445 6613 6172 3 987 3900 46 0 12 chr9 52729410 52729894 -71346278 + L1Md_T LINE L1 6105 6582 0 3 987 6742 165 98 31 chr9 52729894 52730019 -71346153 - Lx4B LINE L1 -887 6171 6026 3 987 804 50 0 0 chr9 52730019 52730120 -71346052 + (TCTCC)n Simple_repeat Simple_repeat 5 105 0 3 987 24290 149 16 78 chr9 52730120 52734463 -71341709 - Lx4B LINE L1 -1033 6025 1939 3 987 4447 48 26 0 chr9 52734463 52735003 -71341169 - L1_Mus1 LINE L1 -1 6566 6013 3 987 24290 160 13 63 chr9 52735003 52736118 -71340054 - Lx4B LINE L1 -3939 1938 890 3 987 22 0 0 0 chr9 52736766 52736788 -71339384 + AT_rich Low_complexity Low_complexity 1 22 0 3 987 1675 232 8 32 chr9 52736789 52737159 -71339013 + Lx5 LINE L1 6688 7048 -2 3 987 1423 136 4 18 chr9 52740045 52740270 -71335902 - URR1B DNA MER1_type -2 223 2 3 987 1014 143 6 0 chr9 52740923 52741091 -71335081 - URR1A DNA MER1_type 0 226 58 3 987 354 296 47 36 chr9 52740925 52741118 -71335054 + CYRA11_Mm Unknown Y-chromosome 173 367 -250 3 987 255 273 13 13 chr9 52741715 52741793 -71334379 + B4A SINE B4 2 79 -213 3 987 303 150 0 0 chr9 52741793 52741853 -71334319 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 987 282 203 0 0 chr9 52741856 52741915 -71334257 - ORR1D2 LTR MaLR -311 59 1 3 987 232 227 14 57 chr9 52743446 52743516 -71332656 + MER5A1 DNA MER1_type 70 136 -30 3 987 573 15 0 0 chr9 52743606 52743672 -71332500 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 987 1685 175 23 62 chr9 52744505 52744889 -71331283 + ORR1D1 LTR MaLR 6 374 0 3 987 537 310 62 14 chr9 52744899 52745174 -71330998 + B4A SINE B4 3 290 -2 3 987 246 297 17 35 chr9 52745349 52745464 -71330708 + MIRc SINE MIR 96 208 -60 3 987 223 356 33 27 chr9 52745586 52745736 -71330436 + MIRb SINE MIR 3 153 -115 3 987 2283 96 15 18 chr9 52745804 52746132 -71330040 + ORR1A2 LTR MaLR 1 327 0 3 987 819 185 0 40 chr9 52746262 52746414 -71329758 + B1_Mur3 SINE Alu 1 146 -3 3 987 257 292 29 11 chr9 52748766 52748877 -71327295 + L2c LINE L2 3217 3335 -40 3 987 514 28 0 27 chr9 52748886 52748960 -71327212 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 3 987 731 80 32 0 chr9 52750299 52750424 -71325748 + (TG)n Simple_repeat Simple_repeat 1 129 0 3 987 288 0 0 0 chr9 52750424 52750455 -71325717 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 987 297 0 0 0 chr9 52750622 52750655 -71325517 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 987 704 153 0 7 chr9 52750676 52750814 -71325358 + GA-rich Low_complexity Low_complexity 2 138 0 3 987 590 288 35 0 chr9 52750830 52751000 -71325172 - ID_B1 SINE B4 -46 178 3 3 987 289 303 70 52 chr9 52751210 52751407 -71324765 - MLT1C LTR MaLR -1 466 214 3 987 537 303 38 34 chr9 52751406 52751645 -71324527 - MLT1C LTR MaLR -227 240 1 3 987 216 111 0 0 chr9 52752892 52752928 -71323244 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 987 233 167 0 18 chr9 52752928 52752983 -71323189 + GA-rich Low_complexity Low_complexity 1 54 0 3 987 3101 68 7 15 chr9 52753257 52753660 -71322512 + MTB LTR MaLR 1 400 0 3 987 234 290 129 77 chr9 52753726 52753935 -71322237 + Charlie4a DNA MER1_type 1 220 -288 4 987 427 291 109 25 chr9 52753962 52754237 -71321935 + Charlie4a DNA MER1_type 184 481 -27 4 987 529 162 74 38 chr9 52754387 52754529 -71321643 + B3A SINE B2 1 151 -65 4 987 8343 89 17 4 chr9 52754666 52754886 -71321286 - L1_Mm LINE L1 -412 5471 5251 4 987 450 0 0 0 chr9 52754886 52754936 -71321236 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 4 987 8343 89 17 4 chr9 52754936 52755869 -71320303 - L1_Mm LINE L1 -633 5250 4304 4 987 7712 65 19 2 chr9 52755859 52756929 -71319243 + L1_Mus2 LINE L1 5480 6566 0 4 987 379 279 93 82 chr9 52756974 52757243 -71318929 + L1MEd LINE L1 603 874 -5262 4 987 714 294 79 8 chr9 52757337 52757604 -71318568 + B4A SINE B4 2 287 -5 4 987 236 241 0 18 chr9 52757611 52757666 -71318506 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 4 987 313 271 168 11 chr9 52757772 52757951 -71318221 + L1MEd LINE L1 2859 3065 -3081 4 987 189 0 0 0 chr9 52758370 52758391 -71317781 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 987 23 0 0 0 chr9 52758887 52758910 -71317262 + AT_rich Low_complexity Low_complexity 1 23 0 4 987 242 235 81 81 chr9 52758930 52759004 -71317168 + B4A SINE B4 83 156 -136 4 987 480 204 9 55 chr9 52758938 52759028 -71317144 + PB1D9 SINE Alu 12 97 -23 4 987 726 203 203 0 chr9 52759028 52759215 -71316957 + URR1A DNA MER1_type 1 225 -1 4 987 480 204 9 55 chr9 52759215 52759233 -71316939 + PB1D9 SINE Alu 98 115 -5 4 987 21 0 0 0 chr9 52759235 52759256 -71316916 + AT_rich Low_complexity Low_complexity 1 21 0 4 987 460 287 103 0 chr9 52759411 52759643 -71316529 + L1MEd LINE L1 3753 4015 -2131 4 987 251 278 0 0 chr9 52759853 52759907 -71316265 + B4A SINE B4 15 68 -224 4 987 1267 201 48 24 chr9 52760146 52760339 -71315833 + RLTR20C LTR ERVK 238 432 -102 4 987 519 0 42 0 chr9 52760339 52760410 -71315762 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 987 1267 201 48 24 chr9 52760410 52760506 -71315666 + RLTR20C LTR ERVK 433 533 -1 4 987 237 261 206 0 chr9 52761311 52761403 -71314769 + PB1D10 SINE Alu 1 111 -6 4 987 4697 223 88 7 chr9 52762552 52763599 -71312573 + Lx6 LINE L1 6060 7191 -269 4 987 1176 111 0 0 chr9 52763599 52763779 -71312393 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 987 6157 37 3 0 chr9 52763782 52764505 -71311667 - L1Md_T LINE L1 -13 6569 5845 4 987 4004 28 0 0 chr9 52764505 52764962 -71311210 + L1Md_T LINE L1 5253 5709 -174 4 987 1178 68 0 6 chr9 52764981 52765145 -71311027 - B2_Mm2 SINE B2 -32 163 1 4 987 1256 205 59 8 chr9 52765145 52765401 -71310771 + Lx6 LINE L1 7188 7456 -4 4 987 474 18 0 0 chr9 52766221 52766276 -71309896 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 4 987 297 0 0 0 chr9 52766505 52766538 -71309634 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 987 384 22 0 0 chr9 52766890 52766935 -71309237 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 987 216 135 0 0 chr9 52767237 52767274 -71308898 + (CATA)n Simple_repeat Simple_repeat 4 40 0 4 987 399 41 0 0 chr9 52767355 52767404 -71308768 + (TTG)n Simple_repeat Simple_repeat 3 51 0 4 987 1122 82 0 20 chr9 52768834 52768984 -71307188 + B1_Mus2 SINE Alu 1 147 0 4 987 461 276 63 41 chr9 52771154 52771322 -71304850 - RLTR15 LTR ERVK -85 274 110 4 987 686 8 81 0 chr9 52771322 52771445 -71304727 + (TC)n Simple_repeat Simple_repeat 2 134 0 4 987 461 276 63 41 chr9 52771445 52771544 -71304628 - RLTR15 LTR ERVK -250 109 2 4 987 206 263 134 42 chr9 52772850 52772969 -71303203 + L2c LINE L2 3258 3387 0 4 987 516 191 7 7 chr9 52774147 52774439 -71301733 + (CA)n Simple_repeat Simple_repeat 1 292 0 4 987 577 147 296 24 chr9 52774474 52774648 -71301524 - Lx9 LINE L1 -1 7643 7423 4 987 807 254 76 43 chr9 52775112 52775388 -71300784 + B4A SINE B4 8 292 0 4 987 590 129 0 0 chr9 52776160 52776253 -71299919 + URR1B DNA MER1_type 133 225 0 4 987 188 299 124 22 chr9 52779070 52779159 -71297013 + L4 LINE RTE 197 294 -1735 4 987 215 319 69 0 chr9 52779698 52779814 -71296358 + MIR SINE MIR 126 249 -13 4 987 265 314 71 28 chr9 52780090 52780231 -71295941 - L2 LINE L2 -609 2810 2664 4 987 317 98 0 0 chr9 52780829 52780880 -71295292 + BGLII_B LTR ERVK 1 51 -390 4 987 266 0 0 29 chr9 52781079 52781114 -71295058 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 4 987 614 198 6 18 chr9 52781493 52781663 -71294509 + CT-rich Low_complexity Low_complexity 1 168 0 4 987 271 255 121 48 chr9 52782531 52782696 -71293476 - LTR81B LTR ERV1? -1214 179 3 4 987 1164 130 30 0 chr9 52782914 52783114 -71293058 + L1_Mur1 LINE L1 5194 5399 -487 4 987 324 294 47 14 chr9 52783820 52783840 -71292332 + CYRA11_Mm Unknown Y-chromosome 159 311 -306 4 987 785 94 23 8 chr9 52783840 52783968 -71292204 - URR1B DNA MER1_type -10 215 86 4 987 284 284 0 0 chr9 52785452 52785519 -71290653 - MIR SINE MIR -78 184 118 4 987 826 276 44 44 chr9 52785618 52785891 -71290281 + MTEa LTR MaLR 1 273 -106 4 987 783 250 107 112 chr9 52785944 52786291 -71289881 - MTD LTR MaLR -70 349 5 4 987 454 208 59 10 chr9 52786287 52786389 -71289783 + MTEa LTR MaLR 273 379 0 4 987 350 262 69 47 chr9 52786389 52786511 -71289661 - MLT1A1 LTR MaLR -44 346 236 4 987 369 109 0 0 chr9 52786532 52786587 -71289585 + (CATA)n Simple_repeat Simple_repeat 3 57 0 4 987 1240 306 42 45 chr9 52787364 52787914 -71288258 + MLT2B2 LTR ERVL 1 596 -5 4 987 606 109 0 0 chr9 52788809 52788910 -71287262 + (TC)n Simple_repeat Simple_repeat 2 102 0 4 987 237 33 0 0 chr9 52788910 52788940 -71287232 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 987 3535 199 41 137 chr9 52788943 52789815 -71286357 - RLTR21 LTR ERVK -485 1087 343 4 987 513 0 0 0 chr9 52789815 52789872 -71286300 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 4 987 3535 199 41 137 chr9 52789872 52790202 -71285970 - RLTR21 LTR ERVK -1230 342 1 4 987 637 294 103 29 chr9 52790529 52790990 -71285182 + L1MA4 LINE L1 5587 6030 -1666 4 987 318 254 0 0 chr9 52791003 52791070 -71285102 + ORR1D2 LTR MaLR 51 117 -253 4 987 229 255 0 0 chr9 52791587 52791634 -71284538 + ID_B1 SINE B4 79 125 -99 4 987 253 315 0 110 chr9 52791595 52791695 -71284477 + PB1D10 SINE Alu 6 94 -23 4 987 197 333 56 50 chr9 52792015 52792195 -71283977 + MIRb SINE MIR 65 245 -23 4 987 234 349 45 18 chr9 52792296 52792407 -71283765 + MLT1K LTR MaLR 134 247 -348 4 987 635 242 92 24 chr9 52792656 52792893 -71283279 + L1MB5 LINE L1 5337 5590 -590 4 987 292 253 84 0 chr9 52792891 52792986 -71283186 + L1MB5 LINE L1 6064 6166 -8 4 987 1866 206 28 47 chr9 52793407 52793629 -71282543 - MTD LTR MaLR 0 419 197 4 987 6810 65 16 2 chr9 52793629 52794512 -71281660 - Lx3_Mus LINE L1 0 7009 6115 4 987 1866 206 28 47 chr9 52794512 52794716 -71281456 - MTD LTR MaLR -223 196 1 4 987 824 286 58 4 chr9 52794944 52795204 -71280968 - B4A SINE B4 -18 274 1 4 987 202 170 0 96 chr9 52795694 52795746 -71280426 - L3 LINE CR1 -1652 2837 2791 4 987 237 313 35 0 chr9 52795911 52796006 -71280166 - L2c LINE L2 -11 3364 3262 4 987 231 206 46 31 chr9 52796301 52796366 -71279806 - MTE2b LTR MaLR -1 378 313 4 987 209 33 0 32 chr9 52796394 52796425 -71279747 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 4 987 3668 72 0 0 chr9 52796443 52796898 -71279274 - L1_Mus1 LINE L1 0 6567 6113 4 987 3158 56 7 0 chr9 52796898 52797311 -71278861 + L1_Mm LINE L1 2963 3378 -2505 4 987 349 224 36 107 chr9 52797462 52797602 -71278570 + B3 SINE B2 87 216 0 4 987 969 273 130 0 chr9 52797599 52797907 -71278265 - MTE2b LTR MaLR -31 348 1 4 987 377 241 67 25 chr9 52798245 52798364 -71277808 + L1M2 LINE L1 5692 5815 -482 4 987 495 255 97 0 chr9 52798534 52798679 -71277493 + RSINE1 SINE B4 3 161 -4 4 987 283 285 55 7 chr9 52798739 52798883 -71277289 + L1M2 LINE L1 5090 5270 -873 4 987 519 17 0 0 chr9 52799052 52799112 -71277060 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 987 38823 11 2 7 chr9 52800665 52806037 -71270135 + L1Md_A LINE L1 244 5586 -297 4 987 8939 18 0 0 chr9 52806037 52807033 -71269139 + L1Md_A LINE L1 5587 6582 0 4 987 423 0 0 0 chr9 52807083 52807130 -71269042 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 987 183 358 49 0 chr9 52808837 52808918 -71267254 - L2b LINE L2 0 3375 3291 4 987 216 282 113 0 chr9 52809255 52809326 -71266846 - MIR SINE MIR -93 115 37 4 987 195 42 0 0 chr9 52810098 52810122 -71266050 + (CTAAT)n Simple_repeat Simple_repeat 5 28 0 4 987 23 0 0 0 chr9 52810386 52810409 -71265763 + AT_rich Low_complexity Low_complexity 1 23 0 4 987 676 279 29 34 chr9 52811873 52812081 -71264091 + B3A SINE B2 9 215 -1 4 987 471 113 0 0 chr9 52813659 52813730 -71262442 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 4 987 233 264 121 0 chr9 52815236 52815327 -71260845 - MLT1A1 LTR MaLR -13 395 294 4 987 581 252 25 43 chr9 52815383 52815545 -71260627 + ID_B1 SINE B4 4 162 -62 4 987 2161 129 162 8 chr9 52815545 52815934 -71260238 + RLTR44B LTR ERVK 1 449 0 4 987 863 167 47 0 chr9 52815934 52816084 -71260088 + RLTR44-int LTR ERVK 1 157 -2655 4 987 7101 173 21 42 chr9 52816085 52818753 -71257419 + RLTR44-int LTR ERVK 659 2812 0 4 987 2103 145 162 8 chr9 52818753 52819142 -71257030 + RLTR44B LTR ERVK 1 449 0 4 987 262 274 16 0 chr9 52819142 52819204 -71256968 + ID_B1 SINE B4 157 219 -5 4 987 269 365 8 8 chr9 52819329 52819456 -71256716 + MIRc SINE MIR 80 206 -62 4 987 207 0 0 0 chr9 52819646 52819669 -71256503 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 987 1004 232 24 0 chr9 52821220 52821431 -71254741 + B3 SINE B2 1 216 0 4 987 24 32 0 0 chr9 52821431 52821462 -71254710 + AT_rich Low_complexity Low_complexity 1 31 0 4 987 301 236 0 27 chr9 52821513 52821587 -71254585 + MTC LTR MaLR 12 83 -338 4 123 36087 37 0 0 chr9 52821587 52826728 -71249444 + L1Md_T LINE L1 351 5589 -297 4 988 9016 13 0 0 chr9 52826728 52827724 -71248448 + L1Md_T LINE L1 5590 6585 0 4 988 342 80 0 0 chr9 52827749 52827799 -71248373 + (A)n Simple_repeat Simple_repeat 1 50 0 4 988 1823 150 76 6 chr9 52827799 52828127 -71248045 + MTC LTR MaLR 68 418 -3 4 988 574 309 42 16 chr9 52828176 52828367 -71247805 - RMER30 DNA MER1_type -2 200 5 4 988 593 277 191 13 chr9 52829158 52829462 -71246710 - Lx9 LINE L1 -89 7555 7198 4 988 572 309 51 0 chr9 52829541 52829716 -71246456 + MLT1A0 LTR MaLR 128 311 -54 4 988 402 69 0 0 chr9 52830122 52830180 -71245992 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 988 279 0 0 0 chr9 52830182 52830213 -71245959 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 988 202 257 14 28 chr9 52831667 52831739 -71244433 + MIRb SINE MIR 103 173 -95 4 988 530 312 67 42 chr9 52831802 52832086 -71244086 + L1MC1 LINE L1 5899 6189 -144 5 988 407 281 59 95 chr9 52833531 52833700 -71242472 + RSINE1 SINE B4 3 165 0 5 988 3219 103 58 6 chr9 52834160 52834627 -71241545 - Lx2B LINE L1 0 7000 6510 5 988 297 0 0 0 chr9 52834873 52834906 -71241266 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 988 1297 108 0 21 chr9 52834931 52835120 -71241052 + B2_Mm2 SINE B2 2 186 -9 5 988 520 325 42 25 chr9 52835130 52835414 -71240758 + B4A SINE B4 2 290 -2 5 988 242 312 53 9 chr9 52835589 52835702 -71240470 - MIRb SINE MIR -1 267 150 5 988 236 227 10 40 chr9 52835706 52835807 -71240365 + T-rich Low_complexity Low_complexity 6 103 0 5 988 679 129 182 16 chr9 52835807 52835933 -71240239 - B1_Mus2 SINE Alu 0 147 1 5 988 1247 266 120 56 chr9 52836203 52836859 -71239313 - Lx9 LINE L1 -2 7642 6945 5 988 24 0 0 0 chr9 52837168 52837192 -71238980 + AT_rich Low_complexity Low_complexity 1 24 0 5 988 557 133 0 10 chr9 52837552 52837651 -71238521 + (TCC)n Simple_repeat Simple_repeat 1 98 0 5 988 781 204 15 0 chr9 52838100 52838237 -71237935 + B1_Mur3 SINE Alu 2 140 -9 5 988 628 304 89 28 chr9 52839307 52839598 -71236574 - MLT1B LTR MaLR -75 315 7 5 988 185 306 119 75 chr9 52840063 52840222 -71235950 + MIR SINE MIR 78 243 -19 5 988 491 0 0 17 chr9 52840222 52840282 -71235890 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 5 988 870 182 7 7 chr9 52840318 52840462 -71235710 - B1F SINE Alu -5 144 1 5 988 739 241 77 92 chr9 52841215 52841540 -71234632 + RMER5 LTR ERV1 15 334 -200 5 988 570 250 49 16 chr9 52841652 52841835 -71234337 + RMER5 LTR ERV1 321 509 -25 5 988 516 16 0 0 chr9 52842398 52842459 -71233713 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 5 988 276 274 55 0 chr9 52843366 52843439 -71232733 - ID4_ SINE ID -1 82 6 5 988 539 184 0 11 chr9 52845035 52845216 -71230956 + CT-rich Low_complexity Low_complexity 2 180 0 5 988 333 0 0 0 chr9 52845217 52845254 -71230918 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 988 969 159 142 5 chr9 52845381 52845571 -71230601 - B3 SINE B2 0 216 1 5 988 248 366 62 0 chr9 52845603 52845715 -71230457 + PB1D7 SINE Alu 1 119 -1 5 988 8586 19 0 0 chr9 52846712 52847673 -71228499 + L1Md_A LINE L1 5622 6582 0 5 988 306 0 0 0 chr9 52847709 52847743 -71228429 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 988 198 250 0 0 chr9 52848546 52848602 -71227570 + GA-rich Low_complexity Low_complexity 3 58 0 5 988 353 226 108 45 chr9 52848608 52848770 -71227402 - MTD LTR MaLR -14 405 247 5 988 473 313 66 5 chr9 52848781 52848977 -71227195 + Lx7 LINE L1 7118 7325 -371 5 988 34 42 0 0 chr9 52849187 52849235 -71226937 + AT_rich Low_complexity Low_complexity 1 48 0 5 988 809 124 15 0 chr9 52849243 52849380 -71226792 + (GAAA)n Simple_repeat Simple_repeat 3 141 0 5 988 562 309 60 27 chr9 52849385 52849652 -71226520 - MTD LTR MaLR -107 312 8 5 988 211 232 24 0 chr9 52850635 52850717 -71225455 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 988 686 306 76 19 chr9 52850743 52851006 -71225166 - B4A SINE B4 -6 286 9 5 988 2745 293 100 43 chr9 52852132 52853341 -71222831 + Lx9 LINE L1 6184 7461 -183 5 988 185 0 40 0 chr9 52853364 52853389 -71222783 + (CATA)n Simple_repeat Simple_repeat 3 28 0 5 988 3388 38 5 0 chr9 52854911 52855305 -71220867 + MTA_Mm LTR MaLR 1 396 0 5 988 240 297 56 19 chr9 52855369 52855530 -71220642 - L1M5 LINE L1 -742 5431 5265 5 988 186 43 0 0 chr9 52855599 52855622 -71220550 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 5 988 488 30 15 0 chr9 52855911 52855977 -71220195 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 988 17649 73 41 3 chr9 52856145 52859228 -71216944 - MusHAL1 LINE L1 -147 3206 4 5 988 416 284 32 0 chr9 52859270 52859365 -71216807 + B1F1 SINE Alu 1 98 -51 5 988 180 77 0 0 chr9 52859369 52859395 -71216777 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 988 738 249 27 16 chr9 52859525 52859703 -71216469 + MTEa LTR MaLR 1 180 -199 5 988 382 293 26 8 chr9 52859703 52859820 -71216352 + B4A SINE B4 2 120 -172 5 988 374 262 15 69 chr9 52859820 52859834 -71216338 + B3A SINE B2 2 125 -73 5 988 241 232 41 55 chr9 52859921 52859994 -71216178 + B4A SINE B4 148 219 -73 5 988 386 295 50 0 chr9 52860506 52860645 -71215527 - B1F2 SINE Alu -1 148 3 5 988 378 327 66 38 chr9 52860688 52860932 -71215240 - L1MD LINE L1 -2222 3924 3670 5 988 932 162 168 55 chr9 52860932 52861134 -71215038 - URR1B DNA MER1_type 0 225 1 5 988 378 327 66 38 chr9 52861134 52861178 -71214994 - L1MD LINE L1 -2477 3669 3628 5 988 413 314 38 49 chr9 52861214 52861398 -71214774 + Charlie12 DNA MER1_type 6 187 -2686 5 988 591 225 58 81 chr9 52861238 52861412 -71214760 - RMER30 DNA MER1_type -32 170 1 5 988 258 348 48 19 chr9 52861751 52861959 -71214213 - L1M6 LINE L1 -4818 1678 1465 5 988 1102 53 13 0 chr9 52862237 52862387 -71213785 + (TTC)n Simple_repeat Simple_repeat 2 153 0 5 988 848 238 61 0 chr9 52864525 52864706 -71211466 + ID_B1 SINE B4 17 208 -16 5 988 204 0 54 27 chr9 52864711 52864748 -71211424 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 988 383 240 235 46 chr9 52864769 52864922 -71211250 + B3A SINE B2 1 182 -16 5 988 1049 78 0 0 chr9 52865227 52865356 -71210816 - L1Md_F2 LINE L1 -652 5930 5802 5 988 2332 33 0 4 chr9 52865383 52865656 -71210516 + L1Md_F2 LINE L1 5315 5586 -297 5 988 8342 46 4 0 chr9 52865656 52866648 -71209524 + L1Md_F2 LINE L1 5587 6582 0 5 988 4836 69 0 8 chr9 52866660 52867288 -71208884 + L1Md_F2 LINE L1 5948 6570 -12 5 988 333 0 0 0 chr9 52867429 52867466 -71208706 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 988 1188 242 120 16 chr9 52868213 52868579 -71207593 - MTD LTR MaLR -15 404 1 5 988 272 329 130 7 chr9 52868710 52868848 -71207324 + MIRb SINE MIR 98 252 -16 5 988 401 0 20 0 chr9 52868877 52868926 -71207246 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 988 410 284 164 23 chr9 52870320 52870576 -71205596 + MLT1C LTR MaLR 42 333 -134 5 988 1866 190 43 15 chr9 52870576 52870972 -71205200 + MTD LTR MaLR 1 407 -12 5 988 505 248 56 0 chr9 52870976 52871101 -71205071 + MLT1C LTR MaLR 328 459 -8 5 988 501 229 42 65 chr9 52871589 52871757 -71204415 - Tigger5 DNA MER2_type -1 2405 2242 5 988 321 327 66 24 chr9 52871735 52871901 -71204271 + B4A SINE B4 104 276 -16 5 988 458 33 17 0 chr9 52871901 52871961 -71204211 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 988 268 279 0 12 chr9 52873460 52873540 -71202632 - MTEb LTR MaLR -14 365 287 5 988 360 148 0 0 chr9 52874106 52874167 -71202005 + (TTG)n Simple_repeat Simple_repeat 2 62 0 5 988 192 77 0 0 chr9 52875278 52875304 -71200868 + (TCCCC)n Simple_repeat Simple_repeat 4 29 0 5 988 387 0 0 0 chr9 52875754 52875797 -71200375 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 988 696 306 12 12 chr9 52875884 52876126 -71200046 + L1MB8 LINE L1 5604 5845 -333 5 988 353 147 113 38 chr9 52876303 52876409 -71199763 + Lx9 LINE L1 7523 7636 -8 5 988 669 257 77 106 chr9 52876665 52876939 -71199233 - B4 SINE B4 -22 270 5 5 988 459 252 72 115 chr9 52877738 52878016 -71198156 + ORR1E LTR MaLR 83 348 -11 5 988 448 275 50 0 chr9 52878409 52878529 -71197643 + B4A SINE B4 4 129 -163 5 988 4052 148 121 17 chr9 52878864 52879709 -71196463 + RMER21A LTR ERV1 3 935 -12 5 988 270 205 16 17 chr9 52881003 52881080 -71195092 - MLT1B LTR MaLR -34 356 305 5 988 298 82 32 32 chr9 52881149 52881212 -71194960 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 5 988 276 174 3 3 chr9 52883245 52883304 -71192868 - L2b LINE L2 -342 3077 3016 5 988 1526 59 5 0 chr9 52883564 52883751 -71192421 + B2_Mm1t SINE B2 2 189 -4 5 988 372 22 0 0 chr9 52884099 52884144 -71192028 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 988 273 231 198 0 chr9 52884474 52884565 -71191607 - ID_B1 SINE B4 -30 194 86 5 988 221 287 148 0 chr9 52885069 52885191 -71190981 + MIRb SINE MIR 30 169 -99 5 988 436 250 98 0 chr9 52885307 52885419 -71190753 + ID_B1 SINE B4 95 217 -7 5 988 744 264 92 42 chr9 52886986 52887322 -71188850 + Lx8 LINE L1 7116 7468 -5 5 988 659 260 196 29 chr9 52887365 52887742 -71188430 + L1MB7 LINE L1 5717 6156 -28 5 988 301 289 20 10 chr9 52887830 52887928 -71188244 - MER5A DNA MER1_type -89 100 2 5 988 1094 149 91 15 chr9 52888109 52888381 -71187791 + ORR1B1 LTR MaLR 1 386 -8 5 988 1210 54 0 0 chr9 52888489 52888636 -71187536 + B1_Mus2 SINE Alu 1 147 0 5 988 1643 283 136 20 chr9 52888750 52889663 -71186509 - L1MC3 LINE L1 -7 7778 6760 5 988 270 274 49 37 chr9 52890430 52890540 -71185632 - MLT1A1 LTR MaLR 0 408 248 5 988 235 307 0 51 chr9 52890670 52890749 -71185423 - MLT1A1 LTR MaLR -281 93 19 5 988 536 291 81 29 chr9 52890964 52891173 -71184999 + MLT1A0 LTR MaLR 114 333 -32 5 988 207 0 0 0 chr9 52891190 52891213 -71184959 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 988 1326 31 0 0 chr9 52891213 52891373 -71184799 - B2_Mm1a SINE B2 -33 160 1 5 988 2061 38 4 15 chr9 52891465 52891733 -71184439 + L1Md_F3 LINE L1 6320 6584 0 5 988 819 19 185 0 chr9 52891966 52892074 -71184098 - L1Md_F2 LINE L1 -575 6007 5880 5 988 4468 58 0 9 chr9 52892074 52892649 -71183523 + L1Md_F2 LINE L1 6001 6570 -12 5 988 686 86 33 33 chr9 52892649 52892677 -71183495 - L1Md_F2 LINE L1 -703 5879 5851 5 988 269 272 10 42 chr9 52892689 52892785 -71183387 + L1M5 LINE L1 5688 5780 -384 5 988 229 327 253 0 chr9 52892795 52892957 -71183215 - MLT1H2 LTR MaLR -2 487 285 5 988 241 266 30 30 chr9 52893222 52893288 -71182884 + ID4_ SINE ID 2 67 -16 6 988 219 299 122 11 chr9 52893623 52893711 -71182461 - L2a LINE L2 -3 3423 3298 6 988 369 361 149 14 chr9 52893911 52894327 -71181845 - L2a LINE L2 -365 3054 2583 6 988 681 76 25 0 chr9 52894329 52894447 -71181725 + (TA)n Simple_repeat Simple_repeat 1 121 0 6 988 23 0 0 0 chr9 52894447 52894470 -71181702 + AT_rich Low_complexity Low_complexity 1 23 0 6 988 294 104 90 7 chr9 52894477 52894632 -71181540 + (TA)n Simple_repeat Simple_repeat 1 168 0 6 988 1460 272 73 5 chr9 52894647 52895046 -71181126 + Lx8 LINE L1 6779 7204 -269 6 988 204 40 0 0 chr9 52895167 52895192 -71180980 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 988 216 269 30 0 chr9 52895454 52895521 -71180651 - L2a LINE L2 -1344 2075 2007 6 988 228 35 0 0 chr9 52895653 52895682 -71180490 + (A)n Simple_repeat Simple_repeat 1 29 0 6 988 560 288 113 48 chr9 52895984 52896400 -71179772 + L1M4 LINE L1 4879 5321 -825 6 988 322 337 93 14 chr9 52896623 52896903 -71179269 + L1ME2 LINE L1 5681 5982 -182 6 988 301 221 41 31 chr9 52896994 52897092 -71179080 + L1MA10 LINE L1 6228 6326 -8 6 988 232 143 0 23 chr9 52897304 52897347 -71178825 - L1M4 LINE L1 -360 5818 5777 6 988 436 280 31 23 chr9 52897377 52897505 -71178667 - RMER30 DNA MER1_type -69 133 5 6 988 229 370 36 15 chr9 52897686 52897823 -71178349 - L2a LINE L2 -1806 1613 1474 6 988 9352 54 0 0 chr9 52897823 52899009 -71177163 - L1Md_F2 LINE L1 -741 5841 4658 6 988 6322 51 4 0 chr9 52899009 52899790 -71176382 + L1Md_F2 LINE L1 5798 6581 -1 6 988 185 255 19 19 chr9 52899809 52899861 -71176311 - L2a LINE L2 -2045 1374 1323 6 988 2219 74 32 0 chr9 52900867 52901176 -71174996 + ORR1A2 LTR MaLR 1 319 -8 6 988 363 260 119 88 chr9 52901180 52901340 -71174832 + LTR33 LTR ERVL 349 513 -2 6 988 302 314 84 8 chr9 52901418 52901537 -71174635 + MER5A1 DNA MER1_type 36 163 -3 6 988 24 0 0 0 chr9 52901566 52901590 -71174582 + GC_rich Low_complexity Low_complexity 1 24 0 6 988 279 256 24 82 chr9 52902490 52902575 -71173597 - MTEa LTR MaLR -287 92 13 6 988 4805 114 39 4 chr9 52902576 52903287 -71172885 - RMER19A LTR ERVK -1 736 1 6 988 252 0 0 0 chr9 52904650 52904678 -71171494 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 988 1057 272 157 22 chr9 52904964 52905373 -71170799 + Lx8 LINE L1 7008 7471 -2 6 988 1896 142 3 25 chr9 52905498 52905817 -71170355 - ORR1A4 LTR MaLR 0 329 18 6 988 283 329 13 0 chr9 52906916 52906995 -71169177 + ID4 SINE ID 2 81 -2 6 988 329 273 18 18 chr9 52907876 52907988 -71168184 + L1MEg LINE L1 1827 1938 -4146 6 988 246 306 12 0 chr9 52908396 52908481 -71167691 + GA-rich Low_complexity Low_complexity 1 86 0 6 988 1079 243 95 17 chr9 52908499 52908921 -71167251 + L1M2 LINE L1 4218 4672 -1471 6 988 204 242 16 31 chr9 52908960 52909024 -71167148 + GA-rich Low_complexity Low_complexity 1 63 0 6 988 1366 271 22 16 chr9 52910280 52910644 -71165528 + MTEa LTR MaLR 2 367 -12 6 988 245 357 0 0 chr9 52911826 52911952 -71164220 + L1M5 LINE L1 5625 5750 -374 6 988 378 0 0 0 chr9 52912081 52912123 -71164049 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 988 329 272 25 50 chr9 52912413 52912533 -71163639 + PB1D7 SINE Alu 1 117 -3 6 988 1098 65 0 0 chr9 52913405 52913544 -71162628 - B1_Mus1 SINE Alu -5 143 5 6 988 4805 36 27 0 chr9 52913742 52914330 -71161842 - L1Md_F3 LINE L1 -14 6570 5967 6 988 8377 33 0 1 chr9 52914330 52915349 -71160823 + L1_Mm LINE L1 3522 4539 -1344 6 988 405 0 0 0 chr9 52916016 52916061 -71160111 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 988 1237 47 0 0 chr9 52916286 52916434 -71159738 + B1_Mus1 SINE Alu 1 148 0 6 988 207 133 0 0 chr9 52916434 52916479 -71159693 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 6 988 21 36 0 0 chr9 52916689 52916717 -71159455 + AT_rich Low_complexity Low_complexity 1 28 0 6 988 250 204 0 0 chr9 52917978 52918022 -71158150 + Lx4A LINE L1 6714 6757 -301 6 988 217 282 77 38 chr9 52918966 52919067 -71157105 + L2c LINE L2 3110 3212 -163 6 988 208 377 46 62 chr9 52919139 52919269 -71156903 + L2c LINE L2 3247 3374 -1 6 988 333 0 0 0 chr9 52919337 52919374 -71156798 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 988 267 312 0 0 chr9 52919393 52919457 -71156715 - B3 SINE B2 -66 150 87 6 988 300 91 0 0 chr9 52920077 52920121 -71156051 + (CCCCCT)n Simple_repeat Simple_repeat 2 45 0 6 988 237 227 57 57 chr9 52921155 52921225 -71154947 + MER20 DNA MER1_type 30 99 -120 6 988 698 34 11 0 chr9 52921592 52921681 -71154491 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 988 725 325 58 48 chr9 52923368 52923959 -71152213 + RLTR17 LTR ERVK 60 690 -2 6 988 348 286 54 49 chr9 52924146 52924330 -71151842 + RLTR42-int LTR ERVK 1215 1399 -4123 6 988 471 275 67 30 chr9 52924726 52924861 -71151311 - B1F1 SINE Alu 0 149 10 6 988 667 142 12 0 chr9 52925744 52925906 -71150266 + GA-rich Low_complexity Low_complexity 2 165 0 6 988 283 262 102 14 chr9 52926355 52926502 -71149670 - L1M4 LINE L1 -4931 1611 1452 6 988 746 203 7 0 chr9 52928096 52928239 -71147933 + B1_Mur4 SINE Alu 5 148 -2 6 988 3015 46 11 0 chr9 52928281 52928654 -71147518 - L1Md_F3 LINE L1 0 6584 6208 6 988 567 0 0 0 chr9 52928813 52928876 -71147296 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 988 247 309 47 58 chr9 52929205 52929377 -71146795 + MLT1A1 LTR MaLR 169 338 -70 6 988 31 26 0 0 chr9 52929760 52929798 -71146374 + AT_rich Low_complexity Low_complexity 1 38 0 6 988 239 176 11 56 chr9 52931027 52931117 -71145055 + T-rich Low_complexity Low_complexity 3 88 0 6 988 3649 63 0 2 chr9 52932258 52932718 -71143454 + L1Md_F2 LINE L1 6113 6571 -11 6 988 2239 143 12 18 chr9 52932734 52933133 -71143039 - L1_Mur2 LINE L1 -1893 3984 3588 6 988 6154 103 41 11 chr9 52933147 52934105 -71142067 + ORR1A1-int LTR MaLR 978 1963 0 6 988 2332 47 59 9 chr9 52934105 52934427 -71141745 + ORR1A1 LTR MaLR 1 338 -8 6 988 9270 118 23 17 chr9 52934434 52936725 -71139447 + Lx LINE L1 4351 6654 0 6 988 25 31 0 0 chr9 52936741 52936773 -71139399 + AT_rich Low_complexity Low_complexity 1 32 0 6 988 769 235 86 137 chr9 52936857 52937021 -71139151 + B3 SINE B2 5 171 -45 6 988 435 19 0 0 chr9 52937021 52937073 -71139099 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 988 394 235 86 137 chr9 52937073 52937105 -71139067 + B2_Mm2 SINE B2 162 191 -4 6 988 267 103 0 0 chr9 52937133 52937172 -71139000 + (A)n Simple_repeat Simple_repeat 1 39 0 6 988 259 225 200 0 chr9 52937648 52937728 -71138444 + B4A SINE B4 43 138 -154 6 988 468 0 0 0 chr9 52938332 52938384 -71137788 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 988 186 43 0 0 chr9 52938397 52938420 -71137752 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 6 988 628 148 9 27 chr9 52938427 52938538 -71137634 - B1_Mur3 SINE Alu -1 148 40 6 988 375 224 92 44 chr9 52938561 52938710 -71137462 + MTD LTR MaLR 254 407 -14 6 988 580 301 65 28 chr9 52938728 52939049 -71137123 + Lx7 LINE L1 5915 6247 -1449 6 988 3182 259 55 48 chr9 52939051 52940001 -71136171 + Lx7 LINE L1 6357 7312 -384 6 988 226 198 45 23 chr9 52940002 52940090 -71136082 + (TTGG)n Simple_repeat Simple_repeat 2 91 0 6 988 236 300 29 20 chr9 52940119 52940221 -71135951 + Lx7 LINE L1 7590 7692 -4 6 988 180 0 0 0 chr9 52940362 52940382 -71135790 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 6 988 976 264 57 17 chr9 52941640 52942019 -71134153 + L1M2 LINE L1 4688 5080 -1063 6 988 2671 151 70 1 chr9 52942071 52942618 -71133554 + Lx2 LINE L1 5426 6055 -942 6 988 505 100 0 0 chr9 52942609 52942691 -71133481 + Lx2 LINE L1 6260 6341 -635 6 988 873 17 17 9 chr9 52943547 52943663 -71132509 + (GAGAA)n Simple_repeat Simple_repeat 2 118 0 6 988 2013 212 63 35 chr9 52943701 52944244 -71131928 + L1_Mur3 LINE L1 272 829 -6883 6 988 283 288 13 40 chr9 52944273 52944349 -71131823 + ID SINE ID 1 74 -150 6 988 264 338 70 25 chr9 52944979 52945137 -71131035 - L2a LINE L2 -181 3245 3081 6 988 24 67 0 0 chr9 52945485 52945530 -71130642 + AT_rich Low_complexity Low_complexity 1 45 0 6 988 1757 176 45 6 chr9 52945625 52945957 -71130215 - Lx2B LINE L1 -11 5866 5522 6 988 4841 189 60 9 chr9 52945945 52946972 -71129200 + Lx2B LINE L1 5873 7050 -8 6 988 450 372 79 15 chr9 52947066 52947331 -71128841 - L2a LINE L2 -780 2639 2358 6 988 241 300 0 0 chr9 52947331 52947401 -71128771 - RMER30 DNA MER1_type 0 202 133 6 988 602 272 71 19 chr9 52948193 52948459 -71127713 + L1MA4 LINE L1 5629 5908 -392 6 988 198 329 104 13 chr9 52948460 52948537 -71127635 + L2c LINE L2 3277 3360 -27 6 988 185 383 83 28 chr9 52949473 52949618 -71126554 - MIRc SINE MIR -74 194 42 6 988 3961 64 6 2 chr9 52950193 52950695 -71125477 + Lx3_Mus LINE L1 6364 6867 -142 6 988 1828 190 53 2 chr9 52952011 52952406 -71123766 + MTD LTR MaLR 3 417 -2 6 988 224 330 9 9 chr9 52952968 52953078 -71123094 + T-rich Low_complexity Low_complexity 3 112 0 6 989 654 234 30 42 chr9 52953652 52953817 -71122355 + RSINE1 SINE B4 2 164 -1 6 989 486 0 0 0 chr9 52953846 52953900 -71122272 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 6 989 243 146 0 0 chr9 52954768 52954809 -71121363 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 989 2475 4 0 0 chr9 52954855 52955128 -71121044 + L1Md_A LINE L1 5314 5586 -297 6 989 9029 2 0 0 chr9 52955128 52956124 -71120048 + L1Md_A LINE L1 5587 6582 0 6 989 637 238 71 48 chr9 52956143 52956311 -71119861 + B3A SINE B2 27 198 0 6 989 555 164 159 30 chr9 52957784 52957916 -71118256 - B1_Mur4 SINE Alu 0 150 2 6 989 1317 172 102 51 chr9 52959306 52959793 -71116379 - RMER3D-int LTR ERVK -735 2107 1596 6 989 3119 186 25 59 chr9 52959796 52960580 -71115592 + RMER3D-int LTR ERVK 2083 2840 -2 6 989 2116 105 32 11 chr9 52960582 52960932 -71115240 + RLTR31_Mm LTR ERVK 1 343 -218 6 989 297 266 0 0 chr9 52961125 52961219 -71114953 + (CA)n Simple_repeat Simple_repeat 2 95 0 6 989 593 155 78 0 chr9 52962465 52962568 -71113604 + B1_Mur4 SINE Alu 4 114 -36 6 989 366 214 71 0 chr9 52962517 52962601 -71113571 - B3 SINE B2 -126 90 1 6 989 216 156 0 0 chr9 52963528 52963560 -71112612 - MIR SINE MIR -60 148 117 6 989 207 0 0 0 chr9 52964011 52964034 -71112138 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 989 1430 79 5 0 chr9 52964219 52964409 -71111763 + B2_Mm1t SINE B2 1 191 -2 7 989 741 263 44 11 chr9 52964589 52964770 -71111402 + B3 SINE B2 2 188 -28 7 989 254 190 137 0 chr9 52964804 52964909 -71111263 + L1MD2 LINE L1 5835 5963 -396 7 989 260 172 60 45 chr9 52964912 52964979 -71111193 + L1MD2 LINE L1 6282 6349 -10 7 989 371 335 146 0 chr9 52968884 52969042 -71107130 + B3A SINE B2 2 182 -16 7 989 1766 197 71 46 chr9 52969548 52969942 -71106230 + MTD LTR MaLR 6 409 -10 7 989 870 142 64 0 chr9 52970691 52970832 -71105340 - B1_Mur4 SINE Alu 0 150 1 7 989 481 291 58 37 chr9 52970972 52971215 -71104957 + L1ME2z LINE L1 6009 6256 -188 7 989 248 218 16 70 chr9 52971771 52971871 -71104301 - MTE2a LTR MaLR 0 359 259 7 989 216 86 0 0 chr9 52972122 52972157 -71104015 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 7 989 345 47 0 0 chr9 52972158 52972201 -71103971 + (GGA)n Simple_repeat Simple_repeat 3 45 0 7 989 264 192 12 82 chr9 52972214 52972299 -71103873 + L1VL2 LINE L1 199 277 -6058 7 989 408 0 68 14 chr9 52972990 52973063 -71103109 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 989 25 0 0 0 chr9 52974582 52974607 -71101565 + AT_rich Low_complexity Low_complexity 1 25 0 7 989 612 97 85 124 chr9 52974944 52975073 -71101099 - B1_Mus1 SINE Alu 0 148 25 7 989 31 58 0 0 chr9 52975090 52975142 -71101030 + AT_rich Low_complexity Low_complexity 1 52 0 7 989 324 0 0 0 chr9 52975429 52975465 -71100707 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 989 252 0 0 0 chr9 52976121 52976149 -71100023 + (A)n Simple_repeat Simple_repeat 1 28 0 7 989 21 71 0 0 chr9 52976924 52976966 -71099206 + AT_rich Low_complexity Low_complexity 1 42 0 7 989 292 325 142 19 chr9 52977815 52978075 -71098097 + B4 SINE B4 1 292 0 7 989 251 282 27 53 chr9 52978141 52978216 -71097956 + ID4_ SINE ID 2 74 -9 7 989 317 234 20 41 chr9 52978338 52978436 -71097736 + B4A SINE B4 139 234 -58 7 989 207 262 45 15 chr9 52978462 52978528 -71097644 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 7 989 411 98 0 0 chr9 52978535 52978596 -71097576 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 989 513 269 207 72 chr9 52978671 52978879 -71097293 + MTD LTR MaLR 148 383 -36 7 989 243 0 0 0 chr9 52978935 52978962 -71097210 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 989 3006 43 5 0 chr9 52979180 52979550 -71096622 - L1_Mus1 LINE L1 -1 6566 6195 7 989 264 333 37 9 chr9 52980978 52981087 -71095085 + MLT1F2 LTR MaLR 18 129 -431 7 989 28 63 0 37 chr9 52981748 52981830 -71094342 + AT_rich Low_complexity Low_complexity 1 79 0 7 989 451 272 98 49 chr9 52981884 52982027 -71094145 - RSINE1 SINE B4 -4 161 12 7 989 1176 48 0 7 chr9 52982089 52982237 -71093935 - B1_Mus1 SINE Alu 0 148 2 7 989 291 239 209 0 chr9 52982727 52982794 -71093378 + B4A SINE B4 1 81 -211 7 989 1478 256 40 24 chr9 52982825 52983245 -71092927 + Lx8 LINE L1 6721 7147 -326 7 989 198 0 0 0 chr9 52983289 52983311 -71092861 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 989 203 208 37 19 chr9 52984989 52985043 -71091129 + (TATAA)n Simple_repeat Simple_repeat 1 55 0 7 989 207 336 89 7 chr9 52986150 52986285 -71089887 - L2a LINE L2 -13 3413 3268 7 989 627 14 0 0 chr9 52986581 52986653 -71089519 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 7 989 574 281 19 6 chr9 52986761 52986922 -71089250 + RSINE1 SINE B4 3 165 0 7 989 275 0 0 28 chr9 52986931 52986967 -71089205 + (TAA)n Simple_repeat Simple_repeat 1 35 0 7 989 504 0 0 0 chr9 52987224 52987280 -71088892 + (CATA)n Simple_repeat Simple_repeat 4 59 0 7 989 350 309 54 18 chr9 52988311 52988423 -71087749 + RMER15 LTR ERVL 281 396 -179 7 989 525 292 88 35 chr9 52988780 52989007 -71087165 + MER90a LTR ERV1 351 589 -25 7 989 204 67 0 0 chr9 52989013 52989043 -71087129 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 7 989 22 35 0 0 chr9 52989548 52989577 -71086595 + AT_rich Low_complexity Low_complexity 1 29 0 7 989 1597 245 34 13 chr9 52989871 52990251 -71085921 - MTD LTR MaLR 0 419 32 7 989 2027 103 90 0 chr9 52990713 52991013 -71085159 - ORR1A2 LTR MaLR 0 327 1 7 989 1491 150 23 99 chr9 52991094 52991283 -71084889 + ORR1A1 LTR MaLR 1 171 -175 7 989 1139 58 0 0 chr9 52991283 52991420 -71084752 + B1_Mus2 SINE Alu 1 137 -10 7 989 600 14 0 0 chr9 52991420 52991489 -71084683 + (TAAAA)n Simple_repeat Simple_repeat 2 70 0 7 989 1491 150 23 99 chr9 52991489 52991601 -71084571 + ORR1A1 LTR MaLR 172 279 -67 7 989 3901 116 17 5 chr9 52991598 52992186 -71083986 + ORR1A1-int LTR MaLR 1321 1915 -48 7 989 22 35 0 0 chr9 52992592 52992621 -71083551 + AT_rich Low_complexity Low_complexity 1 29 0 7 989 994 269 9 0 chr9 52993091 52993314 -71082858 + Lx9 LINE L1 6595 6819 -825 7 989 1125 285 122 13 chr9 52993315 52993784 -71082388 + Lx8 LINE L1 6926 7445 -28 7 989 419 221 17 34 chr9 52993840 52993957 -71082215 + PB1D7 SINE Alu 4 118 -2 7 989 2876 49 0 3 chr9 52994679 52995026 -71081146 + ORR1A0 LTR MaLR 1 346 0 7 989 323 288 15 4 chr9 52996737 52996830 -71079342 + MTE2b LTR MaLR 1 93 -286 7 989 462 53 191 0 chr9 52997598 52997692 -71078480 + L1Md_F2 LINE L1 6471 6582 0 7 989 207 0 0 0 chr9 52997735 52997758 -71078414 + (A)n Simple_repeat Simple_repeat 1 23 0 7 989 319 217 64 21 chr9 52997848 52997942 -71078230 + L1MB3 LINE L1 6055 6152 -31 7 989 783 205 10 73 chr9 52998395 52998600 -71077572 - B3A SINE B2 -6 192 1 7 989 405 284 118 0 chr9 53000525 53000652 -71075520 - MER58B DNA MER1_type -20 321 180 1 989 816 172 7 20 chr9 53001158 53001306 -71074866 + B1_Mur1 SINE Alu 2 147 -2 2 989 232 222 178 0 chr9 53001622 53001667 -71074505 - ID_B1 SINE B4 -18 206 154 3 989 25 65 0 0 chr9 53001692 53001738 -71074434 + AT_rich Low_complexity Low_complexity 1 46 0 4 989 589 288 19 32 chr9 53001760 53001918 -71074254 - RSINE1 SINE B4 -4 161 6 5 989 6893 50 3 1 chr9 53003207 53004067 -71072105 + L1Md_F2 LINE L1 5720 6581 -1 6 989 530 289 8 24 chr9 53004117 53004241 -71071931 + RSINE1 SINE B4 44 165 0 7 989 225 0 0 0 chr9 53004279 53004304 -71071868 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 989 296 48 0 23 chr9 53004305 53004348 -71071824 + (GGGGA)n Simple_repeat Simple_repeat 3 44 0 9 989 621 121 0 0 chr9 53004348 53004472 -71071700 + (TAGA)n Simple_repeat Simple_repeat 2 125 0 1 989 672 304 29 34 chr9 53004480 53004684 -71071488 + B4 SINE B4 88 290 -2 1 989 34211 39 2 1 chr9 53004728 53009707 -71066465 + L1Md_F2 LINE L1 643 5586 -297 1 989 8206 39 3 1 chr9 53009708 53010701 -71065471 + L1Md_F2 LINE L1 5588 6582 0 1 989 423 0 0 0 chr9 53011405 53011452 -71064720 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 989 351 309 153 38 chr9 53011544 53012147 -71064025 + L1M5 LINE L1 3937 4608 -1538 1 989 225 0 0 0 chr9 53012723 53012748 -71063424 + (A)n Simple_repeat Simple_repeat 1 25 0 1 989 410 239 61 52 chr9 53013325 53013440 -71062732 + B1F1 SINE Alu 1 116 -33 1 989 209 33 0 32 chr9 53013447 53013478 -71062694 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 989 354 333 68 31 chr9 53013529 53013690 -71062482 + MIR SINE MIR 10 176 -86 1 989 345 47 0 0 chr9 53013881 53013924 -71062248 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1 989 368 20 20 0 chr9 53013924 53013973 -71062199 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 989 1120 42 42 14 chr9 53014355 53014499 -71061673 + B1_Mus1 SINE Alu 1 148 0 2 989 842 184 6 0 chr9 53014501 53014680 -71061492 + GA-rich Low_complexity Low_complexity 1 180 0 2 989 21 71 0 0 chr9 53015034 53015076 -71061096 + AT_rich Low_complexity Low_complexity 1 42 0 2 989 378 259 0 11 chr9 53015763 53015853 -71060319 + PB1D10 SINE Alu 1 89 -28 2 989 1046 257 3 74 chr9 53016441 53016752 -71059420 + B4A SINE B4 1 289 -3 2 989 21 0 0 0 chr9 53017882 53017903 -71058269 + AT_rich Low_complexity Low_complexity 1 21 0 2 989 459 328 39 43 chr9 53018819 53019026 -71057146 + B4A SINE B4 2 207 -85 2 989 311 286 14 0 chr9 53019097 53019167 -71057005 + ID_B1 SINE B4 141 211 -13 2 989 207 0 0 0 chr9 53019167 53019190 -71056982 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 2 989 200 167 0 0 chr9 53019336 53019366 -71056806 + polypurine Low_complexity Low_complexity 3 32 0 3 989 1077 246 215 36 chr9 53019366 53019445 -71056727 + L1MC LINE L1 4013 4085 -2061 3 989 937 224 10 14 chr9 53019445 53019653 -71056519 + B3 SINE B2 1 207 -9 3 989 1077 246 215 36 chr9 53019653 53020433 -71055739 + L1MC LINE L1 4086 5026 -1120 3 989 592 307 106 63 chr9 53020435 53020689 -71055483 + B4A SINE B4 2 266 -26 3 989 246 32 0 0 chr9 53020691 53020722 -71055450 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 989 280 208 0 0 chr9 53020723 53020776 -71055396 + L1MC LINE L1 5036 5088 -1058 3 989 371 264 89 6 chr9 53021002 53021181 -71054991 + L1MC1 LINE L1 6115 6308 -25 3 989 263 229 14 28 chr9 53021699 53021771 -71054401 - B1F SINE Alu -6 143 73 3 989 314 348 0 25 chr9 53021920 53022038 -71054134 + PB1D10 SINE Alu 2 116 -1 3 989 620 82 122 0 chr9 53023189 53023287 -71052885 + B1_Mm SINE Alu 25 134 -13 3 989 714 88 0 0 chr9 53023867 53023969 -71052203 + BC1_Mm scRNA scRNA 1 102 -50 3 989 318 294 57 38 chr9 53023969 53024075 -71052097 + B4A SINE B4 4 111 -181 4 989 3393 31 0 0 chr9 53024075 53024494 -71051678 + L1_Mm LINE L1 5145 5563 -320 4 989 284 315 10 61 chr9 53024494 53024517 -71051655 + B4 SINE B4 82 101 -191 4 989 8082 41 5 3 chr9 53024517 53025500 -71050672 + L1Md_F2 LINE L1 5587 6571 -11 4 989 294 264 14 27 chr9 53025500 53025574 -71050598 + B4A SINE B4 102 174 -118 4 989 213 39 0 0 chr9 53025585 53025611 -71050561 + (TAAAAA)n Simple_repeat Simple_repeat 5 30 0 4 989 6139 74 74 13 chr9 53026605 53027453 -71048719 + Lx3A LINE L1 6025 6914 -67 4 989 189 0 0 0 chr9 53027453 53027474 -71048698 + (G)n Simple_repeat Simple_repeat 1 21 0 4 989 6139 74 74 13 chr9 53027474 53027525 -71048647 + Lx3A LINE L1 6915 6978 -3 4 989 28 0 0 0 chr9 53027642 53027670 -71048502 + AT_rich Low_complexity Low_complexity 1 28 0 4 989 22 0 0 0 chr9 53027935 53027957 -71048215 + AT_rich Low_complexity Low_complexity 1 22 0 4 989 21 0 0 0 chr9 53028381 53028402 -71047770 + AT_rich Low_complexity Low_complexity 1 21 0 4 989 524 260 66 13 chr9 53028938 53029090 -71047082 + RSINE1 SINE B4 1 160 -5 4 989 224 205 0 108 chr9 53029553 53029646 -71046526 + GA-rich Low_complexity Low_complexity 5 87 0 5 989 1007 293 24 16 chr9 53029994 53030247 -71045925 - B4A SINE B4 -6 286 32 5 989 240 250 18 18 chr9 53030248 53030305 -71045867 - ID4_ SINE ID -25 58 2 5 989 237 33 0 0 chr9 53030314 53030344 -71045828 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 989 1159 36 0 14 chr9 53030352 53030493 -71045679 - B1_Mus2 SINE Alu -8 139 1 5 989 228 316 137 0 chr9 53030504 53030599 -71045573 - PB1D10 SINE Alu -7 110 3 5 989 362 21 21 0 chr9 53030891 53030938 -71045234 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 5 989 464 299 54 65 chr9 53031343 53031619 -71044553 - B4 SINE B4 -18 274 2 5 989 754 286 26 86 chr9 53032160 53032462 -71043710 + B4A SINE B4 2 285 -7 5 989 21 57 0 0 chr9 53032482 53032517 -71043655 + AT_rich Low_complexity Low_complexity 1 35 0 5 989 708 45 0 0 chr9 53032765 53032853 -71043319 + (GAAA)n Simple_repeat Simple_repeat 3 90 0 6 989 440 111 0 14 chr9 53032853 53032926 -71043246 + (GGGGA)n Simple_repeat Simple_repeat 2 73 0 6 989 582 226 26 9 chr9 53032953 53033069 -71043103 + B1_Mur1 SINE Alu 30 147 -2 6 989 289 254 155 42 chr9 53034105 53034298 -71041874 - Charlie2b DNA MER1_type -297 2485 2271 6 989 24 0 0 0 chr9 53034352 53034376 -71041796 + AT_rich Low_complexity Low_complexity 1 24 0 6 989 317 322 16 25 chr9 53034838 53034959 -71041213 - Charlie2b DNA MER1_type -2557 225 106 6 989 190 337 182 26 chr9 53035341 53035643 -71040529 - L2 LINE L2 -1041 2378 2030 6 989 562 244 87 16 chr9 53037610 53037864 -71038308 + L1ME2z LINE L1 6011 6282 -162 6 989 1218 41 7 0 chr9 53038024 53038170 -71038002 + B1_Mus2 SINE Alu 1 147 0 6 989 225 0 0 0 chr9 53038360 53038385 -71037787 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 989 360 0 0 0 chr9 53038385 53038424 -71037748 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 989 364 335 18 23 chr9 53038674 53038867 -71037305 + L1MC LINE L1 5080 5268 -878 7 989 518 244 108 75 chr9 53039089 53039302 -71036870 + L1MC LINE L1 5552 5771 -562 7 989 385 256 0 0 chr9 53039393 53039471 -71036701 + ID2 SINE ID 2 79 -4 7 989 273 296 145 88 chr9 53039648 53039807 -71036365 + B4 SINE B4 11 178 -114 7 989 241 268 0 0 chr9 53039855 53039911 -71036261 + RSINE1 SINE B4 108 163 -2 7 989 249 83 0 0 chr9 53039920 53039956 -71036216 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 989 2552 217 45 48 chr9 53040016 53040622 -71035550 + RLTR18 LTR ERVK 1 604 -12 7 989 333 0 0 0 chr9 53040626 53040663 -71035509 + (CCCCCA)n Simple_repeat Simple_repeat 2 38 0 7 989 1274 160 28 0 chr9 53040751 53040964 -71035208 + URR1A DNA MER1_type 8 226 0 7 989 224 30 0 29 chr9 53041156 53041190 -71034982 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 7 989 1185 55 0 7 chr9 53042451 53042598 -71033574 + B1_Mus2 SINE Alu 2 147 0 7 989 545 279 165 32 chr9 53042751 53043016 -71033156 + B4A SINE B4 3 286 -6 8 989 233 329 106 35 chr9 53043592 53043734 -71032438 + LTR33A LTR ERVL 26 177 -343 8 989 545 240 54 14 chr9 53046540 53046688 -71029484 + RSINE1 SINE B4 11 164 -1 8 989 243 0 0 0 chr9 53046710 53046737 -71029435 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 8 989 444 189 29 10 chr9 53046807 53046919 -71029253 + L1MA8 LINE L1 5839 5951 -228 8 989 666 241 135 62 chr9 53047026 53047234 -71028938 + ID_B1 SINE B4 2 224 0 8 989 300 153 27 40 chr9 53047258 53047333 -71028839 + L1MA8 LINE L1 6077 6150 -141 8 989 372 242 72 144 chr9 53047396 53047585 -71028587 + MLT1C LTR MaLR 181 431 -36 8 989 1098 69 7 14 chr9 53047585 53047732 -71028440 + B1_Mm SINE Alu 2 147 0 8 989 372 233 81 107 chr9 53047732 53047781 -71028391 + MLT1C LTR MaLR 432 467 0 8 989 339 85 0 0 chr9 53047903 53047950 -71028222 + (GGAGA)n Simple_repeat Simple_repeat 2 48 0 8 989 292 253 40 0 chr9 53047950 53048025 -71028147 + A-rich Low_complexity Low_complexity 2 79 0 8 989 393 258 65 0 chr9 53048068 53048161 -71028011 + B1F1 SINE Alu 50 148 -1 9 989 765 303 86 17 chr9 53048255 53048487 -71027685 + B4 SINE B4 45 292 0 9 989 4732 120 12 53 chr9 53048853 53049697 -71026475 + RMER17D2 LTR ERVK 1 809 0 9 989 883 274 201 16 chr9 53049803 53050122 -71026050 + MTEa LTR MaLR 2 379 0 9 989 3971 264 154 23 chr9 53050122 53051362 -71024810 + MTEa-int LTR MaLR 1 1402 -178 9 989 1978 100 60 51 chr9 53051646 53051912 -71024260 + ORR1A2 LTR MaLR 1 285 -42 9 989 1351 64 43 5 chr9 53051912 53052100 -71024072 + B2_Mm2 SINE B2 1 195 0 9 989 1978 100 60 51 chr9 53052100 53052149 -71024023 + ORR1A2 LTR MaLR 286 319 -8 9 989 10066 148 62 18 chr9 53052153 53054033 -71022139 + ORR1A2-int LTR MaLR 1 1963 0 9 989 2437 83 9 0 chr9 53054033 53054357 -71021815 + ORR1A2 LTR MaLR 1 327 0 9 989 376 322 112 11 chr9 53054545 53054733 -71021439 - MIRb SINE MIR -28 240 34 9 989 324 291 98 49 chr9 53055165 53055349 -71020823 + MIRb SINE MIR 25 217 -51 9 989 822 229 102 21 chr9 53055389 53055627 -71020545 - ID_B1 SINE B4 -43 249 3 9 989 279 305 71 24 chr9 53056545 53056629 -71019543 - B1_Mm SINE Alu -52 95 8 9 989 212 0 36 0 chr9 53056771 53056799 -71019373 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 989 1222 202 104 52 chr9 53056820 53057185 -71018987 - ORR1C2 LTR MaLR 0 384 1 1 989 1299 54 0 0 chr9 53057250 53057397 -71018775 - B1_Mus1 SINE Alu -1 147 1 1 989 216 0 0 0 chr9 53057497 53057521 -71018651 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 989 1005 69 44 37 chr9 53057521 53057657 -71018515 - B1_Mm SINE Alu -10 137 1 1 989 243 103 0 0 chr9 53057677 53057716 -71018456 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 989 231 196 59 0 chr9 53058292 53058343 -71017829 + Lx9 LINE L1 7072 7125 -519 1 989 349 274 0 14 chr9 53058401 53058475 -71017697 - ID4_ SINE ID -8 75 3 1 989 798 349 3 15 chr9 53058615 53058952 -71017220 + Lx9 LINE L1 7125 7457 -187 1 989 234 0 0 0 chr9 53058963 53058989 -71017183 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1 989 189 0 0 0 chr9 53059059 53059080 -71017092 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 989 26 0 0 0 chr9 53059161 53059187 -71016985 + AT_rich Low_complexity Low_complexity 1 26 0 1 989 583 322 29 119 chr9 53059189 53059432 -71016740 + ID_B1 SINE B4 3 223 -1 1 989 432 320 127 4 chr9 53059548 53059777 -71016395 + MER44A DNA MER2_type 8 264 -75 1 989 309 208 56 0 chr9 53060195 53060267 -71015905 - PB1D10 SINE Alu -1 116 41 1 989 773 78 42 21 chr9 53060319 53060462 -71015710 + RMER17B LTR ERVK 312 457 -501 1 989 186 43 0 0 chr9 53060464 53060487 -71015685 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 989 915 177 0 13 chr9 53060634 53060783 -71015389 + B1_Mus2 SINE Alu 1 147 0 1 989 469 197 17 0 chr9 53060825 53060942 -71015230 - MT2A LTR ERVL 0 533 415 1 989 480 62 0 0 chr9 53061638 53061702 -71014470 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 989 964 244 9 23 chr9 53061838 53062052 -71014120 - B3 SINE B2 -4 212 2 1 989 21 0 0 0 chr9 53062062 53062083 -71014089 + AT_rich Low_complexity Low_complexity 1 21 0 1 989 258 0 47 23 chr9 53062250 53062293 -71013879 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 1 989 1228 62 7 0 chr9 53062293 53062430 -71013742 - B1_Mus2 SINE Alu -8 139 2 1 989 1727 37 0 0 chr9 53062860 53063051 -71013121 - B2_Mm1a SINE B2 -2 191 1 1 989 1025 249 5 9 chr9 53063164 53063379 -71012793 + ID_B1 SINE B4 7 220 -4 1 989 487 297 135 0 chr9 53063572 53063794 -71012378 + L1MC LINE L1 5483 5734 -599 1 989 31 0 0 0 chr9 53063859 53063890 -71012282 + AT_rich Low_complexity Low_complexity 1 31 0 1 989 255 271 112 20 chr9 53064534 53064632 -71011540 - MER94 DNA AcHobo -25 109 3 1 989 498 33 0 0 chr9 53065398 53065458 -71010714 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 1 989 409 358 117 5 chr9 53065554 53065776 -71010396 + L2a LINE L2 2652 2898 -521 1 989 244 270 18 123 chr9 53066502 53066616 -71009556 - RMER4A LTR ERVK -358 108 7 1 989 277 281 61 79 chr9 53066671 53066866 -71009306 + L2a LINE L2 2927 3110 -265 1 989 203 305 35 47 chr9 53066944 53067030 -71009142 + L2a LINE L2 3293 3377 -49 1 989 239 280 64 11 chr9 53067538 53067632 -71008540 + MER103 DNA DNA 62 160 -6 1 989 662 284 112 26 chr9 53068090 53068481 -71007691 - L1MB7 LINE L1 -87 6097 5673 1 989 703 316 60 50 chr9 53068482 53068534 -71007638 - MT2A LTR ERVL 0 533 482 1 989 1105 96 0 0 chr9 53068534 53068669 -71007503 + B1_Mus1 SINE Alu 1 135 -13 1 989 194 0 39 0 chr9 53068674 53068700 -71007472 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 989 703 316 60 50 chr9 53068700 53069077 -71007095 - MT2A LTR ERVL -56 477 94 1 989 285 238 62 98 chr9 53069030 53069094 -71007078 - MTEa LTR MaLR -239 140 72 1 989 3205 78 24 2 chr9 53069094 53069506 -71006666 + BGLII LTR ERVK 1 421 0 1 989 285 238 62 98 chr9 53069506 53069528 -71006644 - MTEa LTR MaLR -308 71 58 1 989 351 0 0 0 chr9 53069528 53069567 -71006605 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 989 285 238 62 98 chr9 53069567 53069591 -71006581 - MTEa LTR MaLR -322 57 33 1 989 864 224 31 31 chr9 53069722 53070008 -71006164 + RLTR15 LTR ERVK 1 286 -73 1 989 756 240 61 32 chr9 53070247 53070455 -71005717 + MTD LTR MaLR 1 245 -174 1 989 274 345 79 9 chr9 53070471 53070585 -71005587 - ORR1D2 LTR MaLR -243 127 6 1 989 308 331 58 13 chr9 53070625 53070781 -71005391 - L1M2 LINE L1 -728 5572 5410 1 989 2703 218 96 103 chr9 53070902 53071765 -71004407 + RMER13A LTR ERVK 4 860 0 1 989 993 150 50 0 chr9 53073520 53073680 -71002492 + B2_Mm2 SINE B2 2 169 -26 1 989 483 18 0 0 chr9 53073681 53073737 -71002435 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 989 324 194 0 162 chr9 53073812 53073892 -71002280 - ID4_ SINE ID -13 70 4 1 989 366 259 0 36 chr9 53073928 53074012 -71002160 - B1_Mus2 SINE Alu -10 137 57 1 989 352 326 124 17 chr9 53074140 53074558 -71001614 - HAL1 LINE L1 -803 1704 1242 1 989 579 263 36 0 chr9 53074694 53074831 -71001341 - ID_B1 SINE B4 -2 222 81 1 989 407 327 9 0 chr9 53074840 53074950 -71001222 - PB1D7 SINE Alu -8 112 2 1 989 417 86 0 0 chr9 53074953 53075011 -71001161 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 1 989 421 330 9 19 chr9 53075060 53075122 -71001050 - PB1D10 SINE Alu -8 109 49 1 989 2661 52 43 0 chr9 53075122 53075446 -71000726 - L1Md_F2 LINE L1 0 6582 6245 1 989 421 330 9 19 chr9 53075446 53075491 -71000681 - PB1D10 SINE Alu -69 48 3 1 989 25 51 0 0 chr9 53075495 53075534 -71000638 + AT_rich Low_complexity Low_complexity 1 39 0 1 989 369 171 86 0 chr9 53075970 53076040 -71000132 - RSINE1 SINE B4 -37 128 53 1 989 409 176 99 0 chr9 53076036 53076127 -71000045 + B3 SINE B2 117 216 0 1 989 392 275 92 20 chr9 53076238 53076390 -70999782 - MER20 DNA MER1_type -18 201 39 1 989 247 49 24 24 chr9 53076617 53076659 -70999513 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 989 251 178 259 65 chr9 53076670 53076778 -70999394 - RSINE1 SINE B4 0 165 37 1 989 622 234 78 48 chr9 53077991 53078157 -70998015 - MTD LTR MaLR -39 380 210 1 989 468 327 68 6 chr9 53078174 53078349 -70997823 - B3A SINE B2 -10 206 15 1 989 281 309 95 0 chr9 53078346 53078430 -70997742 - MTD LTR MaLR -203 216 125 1 989 1430 92 16 11 chr9 53078608 53078795 -70997377 + B2_Mm2 SINE B2 1 188 -7 1 989 990 239 204 13 chr9 53079073 53079382 -70996790 - ORR1D2 LTR MaLR 0 370 3 1 989 547 268 24 0 chr9 53079510 53079637 -70996535 - ID_B1 SINE B4 -13 211 82 1 989 249 57 0 0 chr9 53080074 53080109 -70996063 + (T)n Simple_repeat Simple_repeat 1 35 0 1 989 216 67 0 0 chr9 53081125 53081155 -70995017 + (T)n Simple_repeat Simple_repeat 1 30 0 1 989 1339 7 0 20 chr9 53081155 53081304 -70994868 - B1_Mus2 SINE Alu 0 147 2 1 989 743 309 84 36 chr9 53081535 53081810 -70994362 + B4A SINE B4 3 290 -2 1 989 4785 112 86 8 chr9 53081928 53082754 -70993418 + RMER12 LTR ERVK 1 890 -432 1 989 351 0 0 0 chr9 53082754 53082793 -70993379 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 989 1013 259 25 125 chr9 53082793 53083178 -70992994 + RMER12 LTR ERVK 1000 1621 -187 1 989 321 102 60 11 chr9 53083567 53083678 -70992494 - B2_Mm2 SINE B2 -1 194 47 1 989 1345 102 11 0 chr9 53083710 53083886 -70992286 - B2_Mm1t SINE B2 -14 179 2 1 990 503 236 34 26 chr9 53084194 53084345 -70991827 - ORR1E LTR MaLR -160 218 71 1 990 503 269 87 0 chr9 53084344 53084448 -70991724 - B1_Mur2 SINE Alu -35 114 2 1 990 553 231 92 8 chr9 53084646 53084777 -70991395 + B1F SINE Alu 3 144 -5 1 990 23 0 0 0 chr9 53084891 53084914 -70991258 + AT_rich Low_complexity Low_complexity 1 23 0 1 990 23 54 0 0 chr9 53085088 53085125 -70991047 + AT_rich Low_complexity Low_complexity 1 37 0 1 990 365 296 20 88 chr9 53085466 53085482 -70990690 - ID_B1 SINE B4 0 224 87 1 990 619 202 3 26 chr9 53085482 53085614 -70990558 - B1_Mur1 SINE Alu -12 137 6 1 990 342 0 0 0 chr9 53085646 53085684 -70990488 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 990 886 216 23 6 chr9 53085715 53085892 -70990280 + B3A SINE B2 2 181 -17 1 990 324 167 33 0 chr9 53085900 53085960 -70990212 + HAL1-3A_ME LINE L1 1975 2036 -822 1 990 216 0 0 0 chr9 53086611 53086635 -70989537 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 990 1252 77 106 0 chr9 53086818 53086988 -70989184 - B2_Mm1t SINE B2 -5 188 1 1 990 252 122 0 0 chr9 53087571 53087612 -70988560 + (T)n Simple_repeat Simple_repeat 1 41 0 1 990 883 176 285 21 chr9 53089611 53089938 -70986234 - RMER4B LTR ERVK -172 413 1 1 990 244 0 0 53 chr9 53090028 53090066 -70986106 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1 990 891 258 0 87 chr9 53090514 53090756 -70985416 + ID_B1 SINE B4 2 222 -2 1 990 228 298 45 45 chr9 53091073 53091161 -70985011 - B3 SINE B2 -14 202 115 1 990 1023 237 56 26 chr9 53091117 53091351 -70984821 - B4 SINE B4 -4 288 48 1 990 474 263 153 52 chr9 53091371 53091600 -70984572 - Kanga1d DNA Tc2 -356 253 2 1 990 334 320 15 38 chr9 53092496 53092629 -70983543 - MER20 DNA MER1_type -1 218 89 1 990 203 302 0 0 chr9 53092891 53092949 -70983223 + C-rich Low_complexity Low_complexity 1 58 0 1 990 841 220 172 86 chr9 53093063 53093331 -70982841 - B4 SINE B4 0 292 2 1 990 207 0 0 0 chr9 53094350 53094373 -70981799 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 990 279 0 0 0 chr9 53094373 53094403 -70981769 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 990 22 103 0 0 chr9 53094442 53094520 -70981652 + AT_rich Low_complexity Low_complexity 1 78 0 1 990 396 55 0 0 chr9 53095975 53096030 -70980142 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 1 990 213 39 0 0 chr9 53096174 53096200 -70979972 + (T)n Simple_repeat Simple_repeat 1 26 0 2 990 1562 6 0 0 chr9 53096300 53096472 -70979700 - L1Md_T LINE L1 0 6582 6411 2 990 279 71 0 0 chr9 53098003 53098045 -70978127 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2 990 693 248 6 25 chr9 53098563 53098724 -70977448 + RSINE1 SINE B4 2 159 -6 2 990 302 0 0 26 chr9 53098734 53098773 -70977399 + (CATA)n Simple_repeat Simple_repeat 1 38 0 2 990 710 279 71 9 chr9 53099397 53099607 -70976565 + ID_B1 SINE B4 1 223 -1 2 990 296 316 96 58 chr9 53100261 53100365 -70975807 + PB1D10 SINE Alu 3 110 -7 2 990 808 180 16 0 chr9 53100613 53100741 -70975431 + B1_Mus1 SINE Alu 1 130 -18 2 990 195 69 0 0 chr9 53100751 53100780 -70975392 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 2 990 364 18 73 0 chr9 53101477 53101532 -70974640 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 2 990 229 345 181 24 chr9 53101792 53102128 -70974044 + L2a LINE L2 3006 3394 -32 2 990 755 135 35 6 chr9 53102407 53102578 -70973594 + CT-rich Low_complexity Low_complexity 3 178 0 2 990 1121 110 7 0 chr9 53102617 53102763 -70973409 + B1_Mm SINE Alu 1 147 0 2 990 875 150 12 93 chr9 53102815 53102977 -70973195 + B1_Mur4 SINE Alu 2 150 0 2 990 395 137 14 0 chr9 53102986 53103059 -70973113 + GA-rich Low_complexity Low_complexity 2 75 0 2 990 600 266 21 26 chr9 53103159 53103321 -70972851 - ID_B1 SINE B4 -48 244 84 2 990 487 211 66 19 chr9 53103621 53103727 -70972445 - PB1D10 SINE Alu 0 117 7 2 990 338 281 83 0 chr9 53103885 53103981 -70972191 - PB1D10 SINE Alu -13 104 1 2 990 1660 111 40 0 chr9 53104373 53104626 -70971546 + ORR1A4 LTR MaLR 1 263 -66 2 990 866 164 20 98 chr9 53104616 53104826 -70971346 - ORR1A4 LTR MaLR -164 230 1 2 990 1192 279 55 44 chr9 53105566 53105933 -70970239 + MTEa LTR MaLR 2 372 -7 2 990 182 380 43 0 chr9 53106107 53106199 -70969973 - MIR SINE MIR -54 208 113 2 990 299 287 197 7 chr9 53107428 53107565 -70968607 - MER106B DNA MER1_type 0 1059 897 2 990 567 271 0 73 chr9 53107610 53107761 -70968411 + ID_B1 SINE B4 81 220 -4 2 990 293 140 18 0 chr9 53107762 53107819 -70968353 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2 990 663 271 52 12 chr9 53108130 53108302 -70967870 - B3A SINE B2 -18 180 2 2 990 186 71 0 0 chr9 53108942 53108970 -70967202 + (A)n Simple_repeat Simple_repeat 1 28 0 2 990 655 179 297 0 chr9 53111313 53111508 -70964664 + Lx5 LINE L1 6795 7047 -3 2 990 256 289 0 67 chr9 53111625 53111729 -70964443 + L1MD1 LINE L1 6106 6202 -40 2 990 333 274 109 69 chr9 53111759 53112028 -70964144 - B4A SINE B4 -4 288 1 2 990 794 242 10 63 chr9 53113191 53113398 -70962774 - B3A SINE B2 0 198 3 2 990 184 321 0 18 chr9 53113565 53113622 -70962550 - MIRb SINE MIR 0 268 213 2 990 588 29 0 0 chr9 53113942 53114012 -70962160 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 2 990 696 242 33 0 chr9 53114104 53114257 -70961915 + B3 SINE B2 1 158 -58 2 990 212 310 166 57 chr9 53114257 53114303 -70961869 + B4A SINE B4 1 224 -68 2 990 540 0 0 0 chr9 53114303 53114363 -70961809 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 2 990 212 310 166 57 chr9 53114363 53114392 -70961780 + B4A SINE B4 225 253 -39 2 990 1242 41 0 0 chr9 53114408 53114555 -70961617 + B1_Mus2 SINE Alu 1 147 0 2 990 261 0 0 0 chr9 53114644 53114673 -70961499 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2 990 580 290 0 0 chr9 53114711 53114849 -70961323 - RSINE1 SINE B4 -17 148 11 2 990 325 228 248 0 chr9 53114900 53115001 -70961171 - RSINE1 SINE B4 -36 129 4 2 990 405 0 0 0 chr9 53115001 53115046 -70961126 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 990 23 0 0 0 chr9 53115210 53115233 -70960939 + AT_rich Low_complexity Low_complexity 1 23 0 2 990 239 262 194 90 chr9 53115372 53115527 -70960645 - B4A SINE B4 -120 172 2 2 990 654 211 0 30 chr9 53115535 53115667 -70960505 - B1F SINE Alu -7 142 15 2 990 806 278 103 81 chr9 53116502 53116960 -70959212 - L1MD2 LINE L1 -370 6387 5895 2 990 357 176 34 34 chr9 53116960 53117048 -70959124 - MLT1A0 LTR MaLR -17 348 261 2 990 806 278 103 81 chr9 53117048 53117759 -70958413 - L1MD2 LINE L1 -370 5894 5128 2 990 1058 83 45 0 chr9 53117775 53117932 -70958240 + B2_Mm2 SINE B2 1 164 -31 2 990 626 205 43 29 chr9 53118151 53118295 -70957877 + B3 SINE B2 1 150 -48 2 990 1122 40 35 0 chr9 53118295 53118468 -70957704 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 990 534 243 69 34 chr9 53118468 53118498 -70957674 + B3A SINE B2 151 181 -17 2 990 273 288 39 23 chr9 53118628 53118756 -70957416 - L1MD2 LINE L1 -2213 4331 4202 2 990 285 323 52 22 chr9 53118806 53118942 -70957230 + MLT1B LTR MaLR 79 218 -172 2 990 1632 68 0 22 chr9 53119097 53119346 -70956826 - L1Md_F2 LINE L1 0 6582 6364 2 990 253 333 51 0 chr9 53119392 53119509 -70956663 - L1M4 LINE L1 -2327 3819 3697 2 990 222 37 0 0 chr9 53119516 53119543 -70956629 + (CTTTG)n Simple_repeat Simple_repeat 2 28 0 2 990 398 279 90 0 chr9 53119543 53119665 -70956507 - B1F SINE Alu -11 138 6 2 990 437 272 156 4 chr9 53119719 53119944 -70956228 - L1MD2 LINE L1 -2532 4012 3754 2 990 49 32 0 0 chr9 53120092 53120155 -70956017 + AT_rich Low_complexity Low_complexity 1 63 0 2 990 378 279 95 7 chr9 53120178 53120315 -70955857 - RSINE1 SINE B4 -15 150 2 2 990 348 320 114 22 chr9 53120345 53120617 -70955555 - L1MD2 LINE L1 -4230 2410 2114 2 990 222 214 0 0 chr9 53120683 53120725 -70955447 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 2 990 324 269 82 30 chr9 53120775 53120909 -70955263 + MER2 DNA MER2_type 38 178 -167 2 990 294 292 85 0 chr9 53121033 53121139 -70955033 - L1MD2 LINE L1 -5996 551 437 2 990 21 0 0 0 chr9 53122410 53122431 -70953741 + GC_rich Low_complexity Low_complexity 1 21 0 2 990 549 44 0 0 chr9 53122755 53122823 -70953349 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 990 1183 254 147 0 chr9 53123482 53123891 -70952281 - Lx8 LINE L1 -326 7147 6679 2 990 3171 66 10 0 chr9 53124432 53124826 -70951346 - L1_Mus2 LINE L1 -3 6563 6166 2 990 4566 59 7 0 chr9 53124826 53125387 -70950785 + L1_Mus2 LINE L1 5595 6159 -407 2 990 388 319 93 10 chr9 53125544 53125737 -70950435 - RMER15 LTR ERVL -15 560 352 2 990 286 269 75 8 chr9 53125821 53125941 -70950231 - RMER15 LTR ERVL -444 131 4 2 990 669 86 0 0 chr9 53126511 53126604 -70949568 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 990 457 230 192 10 chr9 53126609 53126801 -70949371 - B4 SINE B4 -20 272 46 2 990 794 285 77 19 chr9 53127379 53127704 -70948468 - MER2 DNA MER2_type -1 344 1 2 990 303 343 55 14 chr9 53128107 53128252 -70947920 + MLT1A1 LTR MaLR 11 161 -247 2 990 530 243 116 50 chr9 53128274 53128351 -70947821 + ID SINE ID 1 85 -139 2 990 512 15 45 0 chr9 53128351 53128418 -70947754 + (CAAAA)n Simple_repeat Simple_repeat 3 72 0 2 990 353 22 0 21 chr9 53128426 53128473 -70947699 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 990 530 243 116 50 chr9 53128473 53128585 -70947587 + ID_B1 SINE B4 105 210 -14 2 990 306 241 185 9 chr9 53128678 53128808 -70947364 + MLT1A1 LTR MaLR 210 408 0 2 990 1850 129 80 53 chr9 53128922 53129298 -70946874 - ORR1B1 LTR MaLR -8 386 1 2 990 234 0 0 0 chr9 53130451 53130477 -70945695 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 990 286 247 3 0 chr9 53130479 53130558 -70945614 - B1F SINE Alu -20 129 50 2 990 766 219 115 0 chr9 53132448 53132631 -70943541 + B3 SINE B2 2 205 -11 2 990 297 332 54 39 chr9 53132690 53132894 -70943278 + L1M5 LINE L1 5554 5760 -364 2 990 306 245 10 50 chr9 53133102 53133201 -70942971 - LTR78 LTR ERV1 -138 1166 1072 2 990 234 0 0 0 chr9 53133332 53133358 -70942814 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 990 736 242 6 0 chr9 53134267 53134424 -70941748 - RSINE1 SINE B4 -6 159 2 2 990 549 175 0 0 chr9 53134497 53134600 -70941572 + GA-rich Low_complexity Low_complexity 3 105 0 2 990 837 201 0 0 chr9 53134598 53134726 -70941446 + polypurine Low_complexity Low_complexity 1 128 0 2 990 883 37 86 12 chr9 53134726 53134889 -70941283 + (GGGAA)n Simple_repeat Simple_repeat 2 176 0 2 990 837 201 0 0 chr9 53134889 53134939 -70941233 + polypurine Low_complexity Low_complexity 129 178 0 2 990 491 145 0 24 chr9 53134943 53135028 -70941144 + GA-rich Low_complexity Low_complexity 2 84 0 2 990 637 195 8 38 chr9 53135414 53135547 -70940625 + B1_Mur3 SINE Alu 19 147 -2 2 990 186 43 0 0 chr9 53135547 53135570 -70940602 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 990 805 233 0 0 chr9 53135668 53135818 -70940354 + RSINE1 SINE B4 3 152 -13 2 990 622 234 16 44 chr9 53137201 53137384 -70938788 - MER2 DNA MER2_type -12 333 156 2 990 294 318 112 0 chr9 53137392 53137571 -70938601 - MER2 DNA MER2_type -146 199 1 2 990 182 260 64 13 chr9 53138178 53138256 -70937916 - L2a LINE L2 -79 3347 3266 2 990 765 35 26 0 chr9 53138276 53138389 -70937783 + (CA)n Simple_repeat Simple_repeat 2 117 0 2 990 672 232 24 108 chr9 53138792 53139043 -70937129 - MTEb LTR MaLR -13 366 137 2 990 1061 257 44 0 chr9 53139039 53139288 -70936884 + B4A SINE B4 12 271 -21 2 990 228 286 60 4 chr9 53139306 53139413 -70936759 - MIR SINE MIR -45 223 110 2 990 1041 231 264 32 chr9 53139419 53139821 -70936351 - RLTR19 LTR ERVK 0 499 5 2 990 237 65 0 0 chr9 53140045 53140076 -70936096 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2 990 1251 50 0 0 chr9 53140076 53140236 -70935936 - B2_Mm2 SINE B2 -34 161 2 2 990 373 320 20 13 chr9 53140244 53140393 -70935779 - MLT1H LTR MaLR -341 208 59 2 990 769 188 14 14 chr9 53140551 53140691 -70935481 + B1_Mur3 SINE Alu 1 140 -9 2 990 911 57 0 8 chr9 53140708 53140831 -70935341 + (GGGAA)n Simple_repeat Simple_repeat 3 124 0 2 990 408 40 0 0 chr9 53142567 53142617 -70933555 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 990 545 331 8 0 chr9 53142629 53142759 -70933413 - RSINE1 SINE B4 -32 133 3 2 990 387 0 0 0 chr9 53143049 53143092 -70933080 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 990 206 231 115 0 chr9 53143434 53143486 -70932686 + L2a LINE L2 3298 3355 -71 3 990 270 283 99 45 chr9 53144798 53144909 -70931263 + PB1D10 SINE Alu 1 117 0 3 990 428 345 17 72 chr9 53146361 53146542 -70929630 + B4A SINE B4 2 172 -120 3 990 414 321 0 0 chr9 53146675 53146781 -70929391 + PB1D7 SINE Alu 1 106 -14 3 990 314 221 38 38 chr9 53147504 53147636 -70928536 + (TA)n Simple_repeat Simple_repeat 2 133 0 3 990 237 108 0 0 chr9 53147688 53147725 -70928447 + (T)n Simple_repeat Simple_repeat 1 37 0 3 990 299 257 142 3 chr9 53148084 53148211 -70927961 + B1F1 SINE Alu 1 140 -9 3 990 243 0 0 0 chr9 53148415 53148442 -70927730 + (T)n Simple_repeat Simple_repeat 1 27 0 3 990 252 72 35 18 chr9 53149856 53149913 -70926259 + (TTTTTG)n Simple_repeat Simple_repeat 4 61 0 3 990 25 31 0 0 chr9 53150164 53150196 -70925976 + AT_rich Low_complexity Low_complexity 1 32 0 3 990 186 103 0 0 chr9 53150207 53150236 -70925936 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 3 990 409 284 64 0 chr9 53150245 53150386 -70925786 - RSINE1 SINE B4 -14 151 2 3 990 328 293 71 0 chr9 53150483 53150582 -70925590 - B1F SINE Alu -1 148 43 3 990 408 88 0 0 chr9 53151426 53151483 -70924689 + (TCC)n Simple_repeat Simple_repeat 2 58 0 3 990 748 174 58 0 chr9 53151494 53151632 -70924540 - B1_Mur2 SINE Alu -1 148 3 3 990 510 312 0 34 chr9 53151680 53151826 -70924346 - ID_B1 SINE B4 -8 216 76 3 990 668 290 71 30 chr9 53151955 53152250 -70923922 + MER44A DNA MER2_type 23 329 -10 3 990 543 202 25 0 chr9 53152305 53152424 -70923748 - B1F SINE Alu 0 149 28 3 990 338 283 26 34 chr9 53153325 53153442 -70922730 - LTR88c LTR Genie? -746 116 1 3 990 671 155 65 65 chr9 53154180 53154318 -70921854 - B1_Mur4 SINE Alu 0 150 13 3 990 587 162 17 0 chr9 53154920 53155037 -70921135 + GA-rich Low_complexity Low_complexity 3 121 0 3 990 1774 112 59 3 chr9 53155130 53155418 -70920754 - ORR1A2 LTR MaLR -8 319 16 3 990 255 246 0 17 chr9 53155418 53155476 -70920696 + ID_B1 SINE B4 168 224 0 3 990 278 250 0 14 chr9 53155529 53155598 -70920574 + MTEa LTR MaLR 10 77 -302 3 990 318 225 44 11 chr9 53155583 53155673 -70920499 + MTEa LTR MaLR 280 372 -7 3 990 661 272 12 37 chr9 53156766 53156930 -70919242 + RSINE1 SINE B4 3 162 -3 3 990 235 220 34 0 chr9 53157711 53157770 -70918402 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 3 990 945 193 90 20 chr9 53157772 53157973 -70918199 - B3 SINE B2 0 216 2 3 990 228 67 0 0 chr9 53157977 53158007 -70918165 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3 990 453 200 66 44 chr9 53158007 53158143 -70918029 - B1F2 SINE Alu -10 139 1 3 990 288 310 76 23 chr9 53158430 53158444 -70917728 + ID_B1 SINE B4 78 216 -8 3 990 397 271 110 0 chr9 53158444 53158562 -70917610 + B1F1 SINE Alu 11 141 -8 3 990 3373 173 128 7 chr9 53158619 53158791 -70917381 + RLTR25B LTR ERVK 1 211 -817 3 990 220 53 26 26 chr9 53158791 53158830 -70917342 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 990 3373 173 128 7 chr9 53158830 53159418 -70916754 + RLTR25B LTR ERVK 212 852 -176 3 990 683 235 105 31 chr9 53159662 53159890 -70916282 + RLTR25B LTR ERVK 757 1001 -27 3 990 623 298 6 18 chr9 53160344 53160508 -70915664 - RSINE1 SINE B4 0 165 4 3 990 197 319 219 0 chr9 53160866 53160985 -70915187 + MIR SINE MIR 106 250 -12 3 990 340 213 222 79 chr9 53161788 53161977 -70914195 - B3 SINE B2 0 216 1 3 990 1501 32 5 5 chr9 53162320 53162507 -70913665 - L1Md_F3 LINE L1 -2 6582 6396 3 990 240 111 0 0 chr9 53162622 53162667 -70913505 + (A)n Simple_repeat Simple_repeat 1 45 0 3 990 340 312 45 123 chr9 53162696 53162988 -70913184 + B4A SINE B4 13 281 -11 3 990 241 218 18 0 chr9 53162962 53163017 -70913155 + RSINE1 SINE B4 110 165 0 3 990 525 281 9 0 chr9 53163001 53163149 -70913023 + B4 SINE B4 67 218 -74 3 990 953 62 93 0 chr9 53163200 53163329 -70912843 + B1_Mm SINE Alu 1 141 -6 3 990 331 21 0 0 chr9 53163695 53163743 -70912429 + B1_Mur4 SINE Alu 103 150 0 3 990 272 292 174 7 chr9 53163878 53164016 -70912156 - MER20 DNA MER1_type -53 166 6 3 990 494 259 63 142 chr9 53164065 53164145 -70912027 + ID SINE ID 5 70 -154 3 990 234 0 0 0 chr9 53164145 53164171 -70912001 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 990 494 259 63 142 chr9 53164171 53164329 -70911843 + ID_B1 SINE B4 71 224 0 3 990 420 20 0 0 chr9 53164338 53164387 -70911785 + (GGA)n Simple_repeat Simple_repeat 1 49 0 3 990 1210 131 95 24 chr9 53165177 53165388 -70910784 - URR1A DNA MER1_type 0 226 1 3 990 559 174 9 44 chr9 53165510 53165624 -70910548 - B1_Mus2 SINE Alu 0 147 38 3 990 184 347 72 39 chr9 53165848 53166028 -70910144 + MIRb SINE MIR 15 200 -68 3 990 498 261 6 101 chr9 53166060 53166218 -70909954 + RSINE1 SINE B4 4 146 -19 3 990 1112 197 34 5 chr9 53166257 53166466 -70909706 - B3 SINE B2 0 216 2 3 990 411 251 114 110 chr9 53166555 53166774 -70909398 + B4 SINE B4 2 221 -71 3 990 712 154 0 0 chr9 53166662 53166779 -70909393 + B1_Mus2 SINE Alu 31 147 0 3 990 473 308 35 12 chr9 53166814 53166985 -70909187 + B4A SINE B4 110 284 -8 3 990 675 163 29 15 chr9 53167558 53167695 -70908477 - RLTR25B LTR ERVK 0 1028 890 3 990 697 159 15 8 chr9 53167692 53167825 -70908347 - RLTR25B LTR ERVK -254 774 641 3 990 1466 82 0 0 chr9 53167880 53168076 -70908096 - L1_Mus2 LINE L1 0 6566 6371 3 990 9075 97 6 48 chr9 53168076 53168965 -70907207 - L1Md_F LINE L1 -3293 2590 1769 3 990 1313 14 0 0 chr9 53168965 53169112 -70907060 - B1_Mm SINE Alu 0 147 1 3 990 9075 135 32 29 chr9 53169112 53170309 -70905863 - L1Md_F LINE L1 -4115 1768 536 3 990 443 167 22 10 chr9 53170305 53170420 -70905752 - L1VL1 LINE L1 -6147 275 162 3 990 2143 141 35 59 chr9 53170420 53170483 -70905689 - RLTR25B LTR ERVK -363 665 616 3 990 1429 69 0 26 chr9 53170483 53170676 -70905496 - B2_Mm2 SINE B2 -6 189 2 3 990 2143 141 35 59 chr9 53170676 53171035 -70905137 - RLTR25B LTR ERVK -413 615 253 3 990 1274 73 6 0 chr9 53171022 53171199 -70904973 + B2_Mm2 SINE B2 15 192 -3 3 990 1492 199 18 4 chr9 53171194 53171471 -70904701 - RLTR25B LTR ERVK -747 281 1 3 990 183 321 183 0 chr9 53171884 53172015 -70904157 + MIRb SINE MIR 4 158 -110 3 990 214 91 43 64 chr9 53172232 53172279 -70903893 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3 990 848 145 0 35 chr9 53172555 53172698 -70903474 + B1_Mur4 SINE Alu 8 145 -5 3 990 319 243 68 106 chr9 53172557 53172718 -70903454 + B4A SINE B4 94 248 -44 3 990 544 232 34 61 chr9 53172858 53173005 -70903167 + B1F1 SINE Alu 7 149 0 3 990 1381 79 10 10 chr9 53173095 53173287 -70902885 + B2_Mm1t SINE B2 2 193 0 3 990 1167 48 0 52 chr9 53174110 53174265 -70901907 - B1_Mus2 SINE Alu 0 147 1 3 990 216 412 0 0 chr9 53174758 53174935 -70901237 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 990 217 304 17 26 chr9 53174885 53175000 -70901172 + (TATG)n Simple_repeat Simple_repeat 4 117 0 3 990 1251 48 0 0 chr9 53176089 53176236 -70899936 + B1_Mm SINE Alu 1 147 0 3 990 224 302 244 0 chr9 53177845 53178017 -70898155 + MIR SINE MIR 28 241 -21 3 990 350 215 0 25 chr9 53178498 53178579 -70897593 - B4 SINE B4 0 292 214 3 990 261 261 0 0 chr9 53178623 53178688 -70897484 - B4A SINE B4 -12 280 216 3 990 279 0 0 0 chr9 53178689 53178720 -70897452 + (TATG)n Simple_repeat Simple_repeat 1 31 0 3 990 369 0 0 0 chr9 53178779 53178820 -70897352 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 990 1658 132 56 10 chr9 53178851 53179156 -70897016 - ORR1B2 LTR MaLR -48 319 1 3 990 217 272 23 69 chr9 53179216 53179303 -70896869 - RSINE1 SINE B4 -1 164 82 3 990 817 272 40 8 chr9 53179507 53179730 -70896442 - B4A SINE B4 -62 230 2 3 990 498 259 91 72 chr9 53179733 53179954 -70896218 - B4 SINE B4 -67 225 1 3 990 814 151 26 40 chr9 53180066 53180218 -70895954 + B1_Mur4 SINE Alu 1 150 0 3 990 27 0 0 0 chr9 53180239 53180266 -70895906 + AT_rich Low_complexity Low_complexity 1 27 0 3 990 635 227 104 0 chr9 53186075 53186238 -70889934 - B3 SINE B2 -34 182 3 3 990 625 263 60 32 chr9 53186616 53186832 -70889340 - RCHARR1 DNA MER1_type -5 969 748 3 990 638 291 90 73 chr9 53186829 53186968 -70889204 - RCHARR1 DNA MER1_type -505 469 329 3 990 180 0 0 0 chr9 53186968 53186988 -70889184 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 990 638 291 90 73 chr9 53186988 53187271 -70888901 - RCHARR1 DNA MER1_type -646 328 40 3 990 22 70 0 0 chr9 53188547 53188590 -70887582 + AT_rich Low_complexity Low_complexity 1 43 0 3 990 236 197 197 0 chr9 53189294 53189360 -70886812 - ID4 SINE ID -4 79 1 3 990 884 196 41 91 chr9 53189399 53189575 -70886597 - B3 SINE B2 -7 209 31 3 990 342 0 0 0 chr9 53189575 53189613 -70886559 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 990 1148 57 0 0 chr9 53189614 53189754 -70886418 - B1_Mus2 SINE Alu -6 141 2 3 990 884 196 41 91 chr9 53189754 53189794 -70886378 - B3 SINE B2 -186 30 2 3 990 291 54 0 0 chr9 53190239 53190276 -70885896 + (T)n Simple_repeat Simple_repeat 1 37 0 3 990 990 16 167 0 chr9 53190276 53190402 -70885770 - B1_Mm SINE Alu 0 147 1 3 990 449 256 28 63 chr9 53191389 53191531 -70884641 + B1_Mur2 SINE Alu 3 139 -10 3 990 389 221 8 57 chr9 53191547 53191672 -70884500 + PB1D7 SINE Alu 6 119 -1 3 990 390 155 0 0 chr9 53191684 53191737 -70884435 + polypurine Low_complexity Low_complexity 2 54 0 3 990 1452 44 0 0 chr9 53191737 53191917 -70884255 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 990 390 155 0 0 chr9 53191917 53191934 -70884238 + polypurine Low_complexity Low_complexity 55 71 0 3 990 223 147 0 0 chr9 53191936 53191970 -70884202 + (GAA)n Simple_repeat Simple_repeat 2 35 0 3 990 31 0 0 0 chr9 53192089 53192120 -70884052 + GC_rich Low_complexity Low_complexity 1 31 0 4 990 23 0 0 0 chr9 53192245 53192268 -70883904 + GC_rich Low_complexity Low_complexity 1 23 0 4 990 632 269 39 22 chr9 53193454 53193633 -70882539 - B3A SINE B2 -16 182 1 4 990 2601 117 61 147 chr9 53193855 53194428 -70881744 - RLTR28 LTR ERVL 0 524 1 4 990 23 0 0 0 chr9 53194537 53194560 -70881612 + AT_rich Low_complexity Low_complexity 1 23 0 4 990 405 248 78 10 chr9 53194665 53194767 -70881405 + PB1D10 SINE Alu 1 109 -8 4 990 209 59 59 0 chr9 53194771 53194805 -70881367 + (TAGA)n Simple_repeat Simple_repeat 4 39 0 4 990 439 162 0 0 chr9 53195212 53195286 -70880886 - B3 SINE B2 -136 80 7 4 990 278 255 70 43 chr9 53195447 53195463 -70880709 + CYRA11_Mm Unknown Y-chromosome 157 175 -442 4 990 908 156 26 48 chr9 53195463 53195652 -70880520 - URR1A DNA MER1_type 0 226 42 4 990 317 343 88 73 chr9 53195674 53196073 -70880099 + Lx8 LINE L1 7067 7471 -2 4 990 818 180 74 17 chr9 53196855 53197030 -70879142 + B3 SINE B2 28 212 -4 4 990 399 215 23 62 chr9 53197052 53197181 -70878991 - L1MEc LINE L1 -5230 1170 1047 4 990 451 321 100 72 chr9 53197174 53197785 -70878387 - L1MEc LINE L1 -5642 758 131 4 990 393 191 31 82 chr9 53197880 53197977 -70878195 + PB1D9 SINE Alu 28 119 -1 4 990 1263 223 38 4 chr9 53199587 53199853 -70876319 + B4 SINE B4 4 278 -14 4 990 309 68 0 0 chr9 53199871 53199915 -70876257 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 990 423 0 0 0 chr9 53199915 53199962 -70876210 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 990 442 274 0 9 chr9 53201170 53201277 -70874895 + B1F SINE Alu 6 111 -38 4 990 813 182 144 5 chr9 53201392 53201580 -70874592 + B3 SINE B2 2 215 -1 4 990 189 0 0 0 chr9 53202837 53202858 -70873314 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 990 213 308 64 0 chr9 53202939 53203017 -70873155 + ID4 SINE ID 1 83 0 4 990 230 179 18 0 chr9 53203308 53203364 -70872808 + CT-rich Low_complexity Low_complexity 2 58 0 4 990 396 0 0 0 chr9 53203367 53203411 -70872761 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 990 588 299 39 11 chr9 53204316 53204495 -70871677 + B3A SINE B2 11 194 -4 4 990 26 0 0 0 chr9 53205163 53205189 -70870983 + AT_rich Low_complexity Low_complexity 1 26 0 4 990 1217 48 0 0 chr9 53205189 53205336 -70870836 - B1_Mm SINE Alu 0 147 1 4 990 423 215 230 42 chr9 53205352 53205517 -70870655 - B3A SINE B2 -1 197 2 4 990 567 144 0 30 chr9 53205610 53205710 -70870462 - B1_Mur3 SINE Alu -6 143 47 4 990 628 167 0 32 chr9 53206261 53206385 -70869787 - B1_Mur3 SINE Alu -28 121 2 4 990 636 152 19 0 chr9 53206424 53206529 -70869643 - B1_Mur3 SINE Alu -16 133 27 4 990 368 266 23 31 chr9 53206831 53206959 -70869213 - RSINE1 SINE B4 -31 134 8 4 990 1365 89 16 5 chr9 53207002 53207194 -70868978 - B2_Mm2 SINE B2 0 195 2 4 990 189 0 0 0 chr9 53207402 53207423 -70868749 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 990 308 178 10 109 chr9 53207536 53207637 -70868535 + RLTR25B LTR ERVK 431 521 -507 4 990 736 50 0 0 chr9 53207551 53207650 -70868522 + B1_Mus2 SINE Alu 40 138 -9 4 990 349 310 26 40 chr9 53207999 53208150 -70868022 + B1F SINE Alu 1 149 0 4 990 246 216 20 0 chr9 53208177 53208228 -70867944 + PB1D10 SINE Alu 21 72 -45 4 990 251 121 17 0 chr9 53208446 53208504 -70867668 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 4 990 1244 48 0 0 chr9 53208504 53208651 -70867521 - B1_Mus1 SINE Alu 0 148 2 4 990 240 279 16 0 chr9 53208931 53208992 -70867180 - ORR1E LTR MaLR -297 62 1 4 990 866 218 72 0 chr9 53209957 53210150 -70866022 - B3 SINE B2 -8 208 2 4 990 779 192 0 7 chr9 53210335 53210482 -70865690 - MTD LTR MaLR -271 148 3 4 990 539 293 6 6 chr9 53210488 53210653 -70865519 + ORR1E LTR MaLR 25 189 -170 4 990 285 176 73 0 chr9 53210714 53210782 -70865390 + ORR1E LTR MaLR 298 370 0 4 990 1100 92 6 6 chr9 53211714 53211879 -70864293 - B2_Mm1a SINE B2 -28 165 1 4 990 929 76 114 0 chr9 53211915 53212047 -70864125 - B1_Mm SINE Alu 0 147 1 4 990 307 151 0 0 chr9 53212190 53212243 -70863929 + B1_Mus2 SINE Alu 95 147 0 4 990 297 0 0 0 chr9 53212293 53212326 -70863846 + (T)n Simple_repeat Simple_repeat 1 33 0 4 990 412 109 0 0 chr9 53212326 53212390 -70863782 + B1_Mus2 SINE Alu 84 147 0 4 990 2118 88 14 31 chr9 53212420 53212770 -70863402 - RLTR15 LTR ERVK -14 345 2 4 990 302 298 84 19 chr9 53214521 53214675 -70861497 - MER63D DNA AcHobo -561 500 337 4 991 216 0 0 0 chr9 53215447 53215471 -70860701 + (T)n Simple_repeat Simple_repeat 1 24 0 4 991 1174 68 0 0 chr9 53215471 53215619 -70860553 - B1_Mus1 SINE Alu 0 148 1 4 991 847 113 0 0 chr9 53215716 53215840 -70860332 + B2_Mm2 SINE B2 2 125 -70 4 991 507 279 7 14 chr9 53215831 53215969 -70860203 + B3A SINE B2 38 174 -24 4 991 480 331 79 108 chr9 53216499 53216698 -70859474 - B4 SINE B4 -22 270 97 4 991 793 177 13 13 chr9 53216698 53216847 -70859325 - B1_Mur4 SINE Alu 0 150 2 4 991 480 331 79 108 chr9 53216847 53216925 -70859247 - B4 SINE B4 -196 96 1 4 991 1448 224 71 67 chr9 53217283 53217762 -70858410 + RLTR28B LTR ERVL 1 481 0 4 991 300 111 0 0 chr9 53219178 53219223 -70856949 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 4 991 968 72 16 0 chr9 53219407 53219532 -70856640 - B1_Mm SINE Alu -19 128 2 4 991 795 186 94 13 chr9 53220276 53220477 -70855695 + MTD LTR MaLR 80 291 -130 4 991 330 272 74 58 chr9 53220776 53220951 -70855221 + L1ME3A LINE L1 5790 5967 -197 4 991 1185 54 0 0 chr9 53221073 53221220 -70854952 + B1_Mus1 SINE Alu 2 148 0 4 991 604 155 18 9 chr9 53221266 53221377 -70854795 + PB1D9 SINE Alu 9 120 0 4 991 22 35 0 0 chr9 53221454 53221483 -70854689 + AT_rich Low_complexity Low_complexity 1 29 0 4 991 747 182 7 0 chr9 53221862 53221999 -70854173 - B1_Mur4 SINE Alu -2 148 11 4 991 652 237 56 6 chr9 53222115 53222293 -70853879 + B3A SINE B2 2 188 -10 4 991 5480 226 155 14 chr9 53222662 53222759 -70853413 - Lx6 LINE L1 -73 7387 7279 4 991 190 0 81 54 chr9 53222759 53222796 -70853376 + (ATATG)n Simple_repeat Simple_repeat 3 40 0 4 991 5480 226 155 14 chr9 53222796 53223730 -70852442 - Lx6 LINE L1 -182 7278 6176 4 991 2236 135 67 11 chr9 53223730 53224103 -70852069 - ORR1B1 LTR MaLR 0 394 1 4 991 7109 141 123 26 chr9 53224103 53225818 -70850354 - Lx6 LINE L1 -1285 6175 4285 4 991 507 17 0 0 chr9 53225818 53225878 -70850294 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 991 8553 136 54 36 chr9 53225878 53225909 -70850263 - Lx6 LINE L1 -2856 3024 3002 4 991 261 0 0 0 chr9 53225909 53225938 -70850234 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 991 1153 65 0 0 chr9 53225938 53226077 -70850095 - B1_Mus2 SINE Alu -8 139 1 4 991 8553 136 54 36 chr9 53226077 53226984 -70849188 - Lx6 LINE L1 -2879 3001 2059 4 991 306 0 0 0 chr9 53226984 53227018 -70849154 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 991 8553 136 54 36 chr9 53227018 53227296 -70848876 - Lx6 LINE L1 -3822 2058 1771 4 991 1189 48 7 0 chr9 53227296 53227442 -70848730 + B1_Mus2 SINE Alu 1 147 0 4 991 8553 136 54 36 chr9 53227442 53227991 -70848181 - Lx6 LINE L1 -4110 1770 1227 4 991 225 0 0 0 chr9 53227991 53228016 -70848156 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 991 5476 156 83 29 chr9 53228016 53228982 -70847190 - Lx6 LINE L1 -6504 1224 226 4 991 2687 110 63 56 chr9 53228982 53229425 -70846747 - RLTR41 LTR ERV1 0 446 1 4 991 5476 156 83 29 chr9 53229425 53229562 -70846610 - Lx6 LINE L1 -7503 225 58 4 991 22 0 0 0 chr9 53229945 53229967 -70846205 + AT_rich Low_complexity Low_complexity 1 22 0 4 991 24 53 0 0 chr9 53230033 53230071 -70846101 + AT_rich Low_complexity Low_complexity 1 38 0 4 991 322 210 16 180 chr9 53230072 53230194 -70845978 - RSINE1 SINE B4 0 165 64 4 991 782 11 11 0 chr9 53230203 53230298 -70845874 + (GA)n Simple_repeat Simple_repeat 2 97 0 4 991 1029 101 61 113 chr9 53230298 53230501 -70845671 - RMER10B LTR ERVL -205 193 1 4 991 541 286 146 62 chr9 53231320 53231629 -70844543 - MTE2a LTR MaLR -5 374 40 4 991 244 185 163 0 chr9 53231972 53232064 -70844108 - L1M2a LINE L1 -4954 2214 2108 4 991 180 0 0 0 chr9 53232100 53232120 -70844052 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 991 216 0 0 0 chr9 53232127 53232151 -70844021 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 991 1047 67 37 0 chr9 53232151 53232285 -70843887 - B1_Mus2 SINE Alu -8 139 1 4 991 260 234 31 0 chr9 53232699 53232763 -70843409 - L1M2 LINE L1 -4221 2628 2563 4 991 215 303 13 38 chr9 53232923 53233002 -70843170 + MIRb SINE MIR 56 132 -136 4 991 252 372 131 0 chr9 53233071 53233224 -70842948 + MIR3 SINE MIR 4 176 -32 4 991 1013 66 73 0 chr9 53233325 53233462 -70842710 + B1_Mus1 SINE Alu 2 148 0 4 991 833 278 271 24 chr9 53234174 53234763 -70841409 + L1ME3 LINE L1 5408 6138 -40 4 991 3287 143 85 10 chr9 53234890 53235512 -70840660 + RMER1A Other Other 359 1027 -3 4 991 807 224 45 10 chr9 53236307 53236505 -70839667 - B3 SINE B2 -10 206 2 4 991 588 233 94 20 chr9 53236584 53236679 -70839493 - RLTR20C LTR ERVK 0 551 457 4 991 270 0 0 0 chr9 53236679 53236709 -70839463 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 991 911 167 175 70 chr9 53236709 53237044 -70839128 - RLTR20C LTR ERVK -95 456 1 4 991 189 94 0 0 chr9 53237188 53237220 -70838952 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 4 991 1229 27 7 0 chr9 53237220 53237366 -70838806 - B1_Mm SINE Alu 0 147 1 4 991 1238 116 10 40 chr9 53237367 53237565 -70838607 - B2_Mm1t SINE B2 0 193 2 4 991 468 0 0 0 chr9 53237567 53237619 -70838553 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 4 991 1016 124 0 0 chr9 53237619 53237756 -70838416 - B1_Mur4 SINE Alu -13 137 1 4 991 297 185 45 90 chr9 53237941 53238030 -70838142 - MTD LTR MaLR 0 419 335 5 991 361 263 35 9 chr9 53238001 53238116 -70838056 - MTC LTR MaLR -301 120 3 5 991 302 277 118 81 chr9 53238250 53238411 -70837761 + MIRb SINE MIR 57 223 -45 5 991 198 266 126 11 chr9 53238617 53238712 -70837460 - MIR SINE MIR -68 194 89 5 991 837 234 129 0 chr9 53238965 53239166 -70837006 - MT2A LTR ERVL -207 326 100 5 991 393 261 151 0 chr9 53239129 53239248 -70836924 - MTE2b LTR MaLR -242 137 1 5 991 446 193 40 81 chr9 53239544 53239668 -70836504 + B1_Mur2 SINE Alu 31 149 0 5 991 334 272 28 28 chr9 53239843 53239949 -70836223 + B4A SINE B4 71 176 -116 5 991 308 311 31 58 chr9 53239970 53240162 -70836010 - MIRc SINE MIR -40 228 42 5 991 414 0 0 0 chr9 53240282 53240328 -70835844 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 991 682 197 42 0 chr9 53240329 53240471 -70835701 - B1_Mur3 SINE Alu 0 149 2 5 991 387 282 103 15 chr9 53241375 53241706 -70834466 - L1M2 LINE L1 -875 5268 4909 5 991 353 260 82 21 chr9 53241974 53242142 -70834030 - L1M2 LINE L1 -1627 4516 4334 5 991 374 250 47 53 chr9 53242365 53242379 -70833793 + L1MA4A LINE L1 5771 5784 -519 5 991 231 114 0 0 chr9 53242379 53242414 -70833758 + (CATG)n Simple_repeat Simple_repeat 1 35 0 5 991 374 250 47 53 chr9 53242414 53242568 -70833604 + L1MA4A LINE L1 5785 5937 -366 5 991 982 182 102 0 chr9 53242867 53243054 -70833118 + B3 SINE B2 1 206 -10 5 991 830 153 134 6 chr9 53243981 53244145 -70832027 + URR1B DNA MER1_type 1 185 -40 5 991 25 51 0 0 chr9 53244616 53244655 -70831517 + AT_rich Low_complexity Low_complexity 1 39 0 5 991 549 0 0 0 chr9 53246325 53246386 -70829786 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 991 334 299 180 36 chr9 53246572 53246794 -70829378 + L1MEd LINE L1 511 764 -5355 5 991 254 312 32 8 chr9 53247249 53247289 -70828883 - ID4_ SINE ID -53 99 7 5 991 273 254 0 0 chr9 53247289 53247344 -70828828 - tRNA-Ala-GCY_ tRNA tRNA -19 56 2 5 991 306 0 0 0 chr9 53247468 53247502 -70828670 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 991 1303 220 21 7 chr9 53249235 53249514 -70826658 - B4A SINE B4 -9 283 1 5 991 396 0 0 0 chr9 53250034 53250078 -70826094 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 991 24 32 0 0 chr9 53250923 53250954 -70825218 + AT_rich Low_complexity Low_complexity 1 31 0 5 991 241 240 78 29 chr9 53250986 53251089 -70825083 - L1MD1 LINE L1 -61 6181 6074 5 991 744 208 0 0 chr9 53251117 53251242 -70824930 - B1F SINE Alu -20 129 5 5 991 298 271 8 123 chr9 53251139 53251261 -70824911 - MT2B2 LTR ERVL -324 260 153 5 991 322 282 103 0 chr9 53254572 53254708 -70821464 - L1_Rod LINE L1 -670 5627 5491 5 991 660 204 157 0 chr9 53254747 53254919 -70821253 - B3 SINE B2 -16 200 2 5 991 543 251 6 58 chr9 53254934 53255107 -70821065 - RSINE1 SINE B4 0 165 2 5 991 377 313 25 21 chr9 53255202 53255455 -70820717 - L1_Rod LINE L1 -804 5339 5020 5 991 735 173 45 0 chr9 53255666 53255799 -70820373 + B1_Mur2 SINE Alu 1 139 -10 5 991 223 306 0 0 chr9 53256621 53256670 -70819502 - ID4_ SINE ID -8 75 27 5 991 22 35 0 0 chr9 53256675 53256704 -70819468 + AT_rich Low_complexity Low_complexity 1 29 0 5 991 359 264 0 0 chr9 53257534 53257606 -70818566 - U6 snRNA snRNA -34 73 2 5 991 302 348 28 64 chr9 53257995 53258213 -70817959 + L1MC LINE L1 5536 5745 -2137 5 991 331 255 7 11 chr9 53258462 53258555 -70817617 + MER58C DNA MER1_type 120 215 0 5 991 357 298 97 0 chr9 53259243 53259357 -70816815 + PB1 SINE Alu 2 126 -1 5 991 229 161 161 0 chr9 53259365 53259421 -70816751 + ID4_ SINE ID 2 66 -17 5 991 213 281 31 15 chr9 53260024 53260089 -70816083 - RSINE1 SINE B4 -80 85 20 5 991 312 299 71 43 chr9 53260737 53260751 -70815421 + ID_B1 SINE B4 80 221 -1 5 991 364 285 105 8 chr9 53260751 53260875 -70815297 + B1F2 SINE Alu 14 149 0 5 991 393 136 0 0 chr9 53260949 53261015 -70815157 + (GGGA)n Simple_repeat Simple_repeat 4 69 0 5 991 1608 32 0 0 chr9 53261143 53261330 -70814842 - B2_Mm1a SINE B2 -5 188 2 5 991 546 84 24 0 chr9 53261352 53261435 -70814737 + B2_Mm1a SINE B2 104 188 -5 5 991 710 233 102 18 chr9 53261976 53262142 -70814030 + B3 SINE B2 1 180 -36 5 991 214 185 0 44 chr9 53265763 53265831 -70810341 + (TTA)n Simple_repeat Simple_repeat 2 66 0 5 991 298 310 35 0 chr9 53265837 53265950 -70810222 - MIR SINE MIR -34 228 112 5 991 1376 51 17 11 chr9 53266102 53266279 -70809893 + B2_Mm2 SINE B2 2 179 -16 5 991 1594 27 0 21 chr9 53266280 53266470 -70809702 + B2_Mm1t SINE B2 1 186 -7 5 991 207 0 0 0 chr9 53266486 53266509 -70809663 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 991 351 0 0 0 chr9 53267211 53267250 -70808922 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 991 429 20 0 0 chr9 53267250 53267299 -70808873 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 991 360 339 32 8 chr9 53267534 53267659 -70808513 - B1F SINE Alu 0 149 22 5 991 480 18 0 0 chr9 53269285 53269342 -70806830 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 991 2392 134 2 34 chr9 53269557 53269966 -70806206 - RMER10B LTR ERVL -2 396 1 5 991 822 162 246 11 chr9 53270019 53270194 -70805978 + B3 SINE B2 1 216 0 5 991 383 244 73 0 chr9 53270833 53270915 -70805257 + PB1D9 SINE Alu 31 118 -2 5 991 582 202 131 8 chr9 53271058 53271188 -70804984 + B1_Mur4 SINE Alu 1 146 -4 5 991 1485 63 16 0 chr9 53271210 53271399 -70804773 + B2_Mm2 SINE B2 1 192 -3 5 991 527 250 28 7 chr9 53271659 53271800 -70804372 - B1_Mus2 SINE Alu -1 146 3 5 991 1209 131 81 10 chr9 53272455 53272664 -70803508 - URR1A DNA MER1_type -2 224 1 5 991 282 56 0 0 chr9 53272686 53272722 -70803450 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5 991 1059 203 25 5 chr9 53273652 53273855 -70802317 + B3 SINE B2 3 209 -7 5 991 947 274 40 4 chr9 53274508 53274735 -70801437 + B4A SINE B4 56 290 -2 5 991 1234 75 92 0 chr9 53274771 53274944 -70801228 + B2_Mm2 SINE B2 2 190 -5 5 991 811 171 347 7 chr9 53275329 53275600 -70800572 + ORR1D1 LTR MaLR 1 363 -11 5 991 907 172 11 6 chr9 53275747 53275783 -70800389 - B2_Mm2 SINE B2 -18 177 141 5 991 519 17 0 0 chr9 53275783 53275843 -70800329 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 991 907 172 11 6 chr9 53275843 53275981 -70800191 - B2_Mm2 SINE B2 -55 140 3 5 991 940 136 0 21 chr9 53279262 53279405 -70796767 + B1_Mur4 SINE Alu 11 150 0 5 991 457 279 59 115 chr9 53279871 53280158 -70796014 - B4 SINE B4 -18 274 4 5 991 397 286 40 23 chr9 53280555 53280731 -70795441 - MER47B DNA MER2_type -3 415 175 5 991 277 247 39 106 chr9 53280743 53280755 -70795417 + MT2B LTR ERVL 151 155 -446 5 991 586 165 10 10 chr9 53280755 53280853 -70795319 + PB1D9 SINE Alu 2 99 -21 5 991 362 298 57 16 chr9 53281097 53281220 -70794952 + ID_B1 SINE B4 94 221 -3 5 991 22 0 0 0 chr9 53281569 53281591 -70794581 + AT_rich Low_complexity Low_complexity 1 22 0 5 991 1181 97 6 17 chr9 53281935 53281955 -70794217 - B2_Mm1t SINE B2 -14 179 161 5 991 423 0 0 0 chr9 53281955 53282002 -70794170 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 991 1181 97 6 17 chr9 53282002 53282159 -70794013 - B2_Mm1t SINE B2 -33 160 4 5 991 7372 137 24 12 chr9 53282273 53284323 -70791849 + Lx LINE L1 4575 6654 0 5 991 203 350 127 50 chr9 53284365 53284624 -70791548 - L2b LINE L2 -36 3339 3061 5 991 534 263 51 7 chr9 53284644 53284725 -70791447 + ID SINE ID 1 87 -137 5 991 252 212 94 100 chr9 53284725 53284825 -70791347 + B1F2 SINE Alu 1 116 -1 5 991 236 130 22 0 chr9 53284831 53284877 -70791295 + GA-rich Low_complexity Low_complexity 1 47 0 5 991 1667 15 0 24 chr9 53285110 53285316 -70790856 + L1Md_F3 LINE L1 6372 6572 -12 5 991 422 273 51 39 chr9 53285679 53285835 -70790337 - RSINE1 SINE B4 -5 160 3 5 991 250 280 40 0 chr9 53285991 53286091 -70790081 - L1MA6 LINE L1 -24 6276 6173 5 991 367 176 150 142 chr9 53286111 53286252 -70789920 - B3A SINE B2 -1 194 53 5 991 1419 70 11 11 chr9 53286586 53286775 -70789397 - B2_Mm2 SINE B2 -6 189 1 5 991 21 0 0 0 chr9 53287014 53287035 -70789137 + AT_rich Low_complexity Low_complexity 1 21 0 5 991 246 176 0 0 chr9 53287216 53287267 -70788905 + T-rich Low_complexity Low_complexity 1 51 0 5 991 1226 48 0 0 chr9 53287270 53287417 -70788755 - B1_Mm SINE Alu 0 147 1 5 991 191 292 0 0 chr9 53287511 53287559 -70788613 + L2b LINE L2 3227 3274 -101 5 991 540 270 6 104 chr9 53288943 53289125 -70787047 + RSINE1 SINE B4 2 165 0 5 991 280 301 29 19 chr9 53289164 53289269 -70786903 + PB1D10 SINE Alu 4 109 -8 5 991 216 303 142 19 chr9 53289421 53289576 -70786596 + MIRb SINE MIR 41 214 -54 5 991 902 136 20 20 chr9 53289583 53289733 -70786439 + B1_Mur4 SINE Alu 1 150 0 5 991 283 232 0 182 chr9 53291254 53291391 -70784781 - RLTR25A LTR ERVK -470 633 522 5 991 855 27 0 9 chr9 53291321 53291433 -70784739 - B1_Mus2 SINE Alu -32 115 5 5 991 473 286 12 18 chr9 53291500 53291664 -70784508 - RSINE1 SINE B4 0 165 3 5 991 829 254 57 0 chr9 53291866 53292059 -70784113 + B3 SINE B2 3 206 -10 5 991 390 312 63 15 chr9 53292601 53292806 -70783366 - L1M3 LINE L1 -1904 4236 4022 6 991 3127 65 2 12 chr9 53293347 53293751 -70782421 + MTB LTR MaLR 1 400 0 6 991 1082 168 9 67 chr9 53294668 53294891 -70781281 + B3 SINE B2 1 210 -6 6 991 576 301 23 6 chr9 53295645 53295822 -70780350 + B3A SINE B2 1 180 -18 6 991 261 0 0 0 chr9 53296837 53296866 -70779306 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 6 991 189 171 0 0 chr9 53297330 53297365 -70778807 + GA-rich Low_complexity Low_complexity 4 38 0 6 991 583 304 112 8 chr9 53297397 53297646 -70778526 + B4A SINE B4 15 289 -3 6 991 22 0 0 0 chr9 53297852 53297874 -70778298 + AT_rich Low_complexity Low_complexity 1 22 0 6 991 726 162 41 27 chr9 53298574 53298720 -70777452 - B1_Mur3 SINE Alu 0 149 2 6 991 214 174 0 0 chr9 53299232 53299278 -70776894 + T-rich Low_complexity Low_complexity 1 46 0 6 991 631 211 14 0 chr9 53299590 53299737 -70776435 + B1_Mur2 SINE Alu 1 149 0 6 991 839 167 89 103 chr9 53299754 53299968 -70776204 + B3 SINE B2 1 211 -5 6 991 296 258 61 20 chr9 53300984 53301083 -70775089 - B4A SINE B4 -164 128 26 6 991 1108 205 5 27 chr9 53301527 53301748 -70774424 - B3 SINE B2 0 216 1 6 991 605 266 7 0 chr9 53301850 53301993 -70774179 - B1F SINE Alu -5 144 1 6 991 766 243 45 40 chr9 53302160 53302383 -70773789 - ID_B1 SINE B4 0 224 1 6 991 336 24 0 0 chr9 53303826 53303867 -70772305 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 991 1058 184 71 5 chr9 53304606 53304803 -70771369 - B3 SINE B2 -6 210 1 6 991 23 54 0 0 chr9 53305351 53305388 -70770784 + AT_rich Low_complexity Low_complexity 1 37 0 6 991 1066 148 147 5 chr9 53306202 53306399 -70769773 - URR1B DNA MER1_type 0 225 1 6 991 210 300 100 0 chr9 53306728 53306808 -70769364 + MIRb SINE MIR 81 168 -100 6 991 356 335 88 74 chr9 53308093 53308377 -70767795 + B4 SINE B4 4 291 -1 6 991 1227 138 0 5 chr9 53308423 53308613 -70767559 + B2_Mm2 SINE B2 2 190 -5 6 991 1322 80 23 0 chr9 53309780 53309956 -70766216 + B2_Mm2 SINE B2 2 181 -14 6 991 381 88 8 67 chr9 53309999 53310067 -70766105 + B2_Mm2 SINE B2 47 114 -102 6 991 251 287 126 0 chr9 53310707 53310794 -70765378 + PB1D7 SINE Alu 17 114 -6 6 991 306 316 35 62 chr9 53311474 53311619 -70764553 + RSINE1 SINE B4 15 155 -10 6 991 351 150 0 0 chr9 53311636 53311696 -70764476 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 991 546 240 45 23 chr9 53311706 53311838 -70764334 + B1_Mur2 SINE Alu 3 137 -12 6 991 225 0 0 0 chr9 53311992 53312017 -70764155 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 991 24 0 0 0 chr9 53312354 53312378 -70763794 + AT_rich Low_complexity Low_complexity 1 24 0 6 991 678 210 31 19 chr9 53312386 53312546 -70763626 + RSINE1 SINE B4 4 165 0 6 991 450 258 24 40 chr9 53312794 53312919 -70763253 + PB1 SINE Alu 1 123 -4 6 991 635 239 7 15 chr9 53313535 53313671 -70762501 + B1_Mur1 SINE Alu 2 136 -13 6 991 1220 112 6 17 chr9 53313761 53313942 -70762230 + B2_Mm2 SINE B2 2 180 -15 6 991 210 118 0 0 chr9 53313942 53313976 -70762196 + (GGAGAA)n Simple_repeat Simple_repeat 4 37 0 6 991 1446 83 0 5 chr9 53314159 53314353 -70761819 - B2_Mm2 SINE B2 0 195 3 6 991 331 355 48 8 chr9 53314353 53314478 -70761694 + RSINE1 SINE B4 23 152 -13 6 991 305 174 0 14 chr9 53314517 53314587 -70761585 + (CATA)n Simple_repeat Simple_repeat 4 72 0 6 991 468 0 0 0 chr9 53314874 53314926 -70761246 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 6 991 714 24 0 0 chr9 53314956 53315040 -70761132 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 6 991 390 91 0 0 chr9 53315646 53315701 -70760471 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 991 2054 159 121 22 chr9 53316194 53316555 -70759617 + RLTR16 LTR ERVK 6 412 -93 6 991 729 0 0 0 chr9 53316555 53316636 -70759536 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 991 2054 159 121 22 chr9 53316636 53316729 -70759443 + RLTR16 LTR ERVK 413 505 0 6 991 320 317 76 9 chr9 53316811 53316916 -70759256 + PB1D10 SINE Alu 1 112 -5 6 991 649 185 35 49 chr9 53317012 53317154 -70759018 + B1_Mur4 SINE Alu 1 140 -10 6 991 183 42 0 0 chr9 53317154 53317178 -70758994 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 991 1081 223 184 20 chr9 53317662 53318010 -70758162 + MTD LTR MaLR 1 405 -14 6 991 599 114 214 26 chr9 53318605 53318722 -70757450 + B1_Mus1 SINE Alu 8 146 -2 6 991 204 216 0 0 chr9 53318736 53318787 -70757385 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 6 991 762 193 15 0 chr9 53319107 53319242 -70756930 - B1_Mus2 SINE Alu -6 141 5 6 991 266 275 62 12 chr9 53320540 53320621 -70755551 - PB1 SINE Alu -20 107 23 6 991 393 248 123 62 chr9 53320698 53320844 -70755328 - RSINE1 SINE B4 -6 159 5 6 991 390 237 118 140 chr9 53321548 53321769 -70754403 - B3 SINE B2 0 216 1 6 991 2483 155 41 31 chr9 53321954 53322440 -70753732 + RLTR16 LTR ERVK 1 491 -14 6 991 667 204 27 47 chr9 53322535 53322684 -70753488 + B1_Mur1 SINE Alu 4 149 0 6 991 226 299 41 0 chr9 53322849 53322946 -70753226 + L1MA7 LINE L1 6134 6234 -57 6 991 709 283 4 102 chr9 53323640 53323770 -70752402 + B3 SINE B2 1 125 -91 6 991 243 0 0 0 chr9 53323770 53323797 -70752375 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 991 709 283 4 102 chr9 53323797 53323902 -70752270 + B3 SINE B2 126 213 -3 6 991 392 276 114 0 chr9 53324015 53324138 -70752034 + B1_Mur1 SINE Alu 13 149 0 6 991 1073 172 79 23 chr9 53325036 53325250 -70750922 + URR1A DNA MER1_type 1 226 0 6 991 495 195 16 78 chr9 53325330 53325342 -70750830 - PB1D9 SINE Alu 0 120 113 6 991 183 42 0 0 chr9 53325342 53325366 -70750806 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 991 495 195 16 78 chr9 53325366 53325481 -70750691 - PB1D9 SINE Alu -8 112 1 6 991 370 242 136 8 chr9 53325555 53325680 -70750492 + Lx6 LINE L1 6743 6883 -577 6 991 1354 238 78 8 chr9 53325697 53326057 -70750115 + Lx6 LINE L1 7050 7434 -26 6 991 32 67 0 0 chr9 53327021 53327081 -70749091 + AT_rich Low_complexity Low_complexity 1 60 0 6 991 467 278 116 49 chr9 53327428 53327696 -70748476 + L1MB8 LINE L1 5869 6154 -30 6 991 860 181 7 0 chr9 53327705 53327854 -70748318 - B1_Mur4 SINE Alu 0 150 1 6 991 1550 17 28 0 chr9 53328589 53328769 -70747403 - B2_Mm1a SINE B2 -7 186 2 6 991 443 108 10 70 chr9 53328779 53328879 -70747293 - Lx LINE L1 -6 6648 6555 6 991 200 366 103 63 chr9 53328945 53329120 -70747052 - L3 LINE CR1 -449 4040 3859 6 991 185 0 0 39 chr9 53329495 53329521 -70746651 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 991 808 173 0 0 chr9 53329521 53329654 -70746518 - B1_Mus1 SINE Alu -10 138 6 6 991 1227 71 35 0 chr9 53330721 53330891 -70745281 - B2_Mm2 SINE B2 -19 176 1 6 991 211 301 14 14 chr9 53331312 53331386 -70744786 - B1_Mus1 SINE Alu -51 97 24 6 991 393 285 78 16 chr9 53331541 53331744 -70744428 - L1M2 LINE L1 -846 5294 5083 6 991 594 311 31 52 chr9 53331797 53332085 -70744087 - B4A SINE B4 -10 282 1 6 991 325 299 35 87 chr9 53332901 53333073 -70743099 - LTR40a LTR ERVL -10 509 347 6 991 290 288 146 33 chr9 53333137 53333288 -70742884 - LTR40a LTR ERVL -345 174 7 6 991 318 119 360 10 chr9 53334659 53334759 -70741413 - B2_Mm2 SINE B2 -14 181 47 6 991 1346 75 11 0 chr9 53334806 53334980 -70741192 - B2_Mm1t SINE B2 -14 179 4 6 991 383 330 17 9 chr9 53335023 53335139 -70741033 + PB1D10 SINE Alu 1 117 0 6 991 1208 41 7 0 chr9 53335524 53335670 -70740502 - B1_Mus2 SINE Alu 0 147 1 6 991 261 363 22 0 chr9 53335746 53335837 -70740335 + MER58A DNA MER1_type 20 112 -112 6 991 885 243 18 0 chr9 53336220 53336389 -70739783 - B3 SINE B2 -13 203 32 6 991 1286 67 67 0 chr9 53336566 53336746 -70739426 + B2_Mm2 SINE B2 1 192 -3 6 991 1562 42 0 0 chr9 53336896 53337088 -70739084 - MTB LTR MaLR 0 400 209 6 991 217 299 29 15 chr9 53337625 53337693 -70738479 + ID4_ SINE ID 15 83 0 6 991 798 275 56 10 chr9 53337793 53337988 -70738184 + B4 SINE B4 4 207 -85 6 991 350 287 17 17 chr9 53338069 53338186 -70737986 + PB1D10 SINE Alu 1 117 0 6 991 279 309 190 6 chr9 53338240 53338419 -70737753 + L3 LINE CR1 4004 4215 -274 6 991 714 207 169 17 chr9 53338437 53338614 -70737558 + B3 SINE B2 2 205 -11 6 991 1289 95 16 21 chr9 53338643 53338836 -70737336 + B2_Mm2 SINE B2 1 192 -3 6 991 357 302 38 0 chr9 53338943 53339049 -70737123 - RSINE1 SINE B4 -20 145 36 6 991 1263 14 0 0 chr9 53339066 53339212 -70736960 - B1_Mus2 SINE Alu 0 147 2 6 991 839 111 67 0 chr9 53339565 53339700 -70736472 - B1_Mur4 SINE Alu 0 150 7 6 991 399 252 84 27 chr9 53340274 53340396 -70735776 + B3 SINE B2 1 127 -89 6 991 25 0 0 0 chr9 53340407 53340432 -70735740 + AT_rich Low_complexity Low_complexity 1 25 0 6 991 741 122 0 139 chr9 53340562 53340734 -70735438 - B1_Mus1 SINE Alu 0 148 1 6 991 321 228 87 0 chr9 53340763 53340855 -70735317 - L1MA7 LINE L1 0 6291 6192 6 991 496 189 85 0 chr9 53340911 53341017 -70735155 - B1_Mm SINE Alu 0 147 33 6 991 448 222 119 8 chr9 53341102 53341220 -70734952 - B1F SINE Alu 0 149 19 6 991 329 194 35 36 chr9 53341281 53341395 -70734777 - B2_Mm2 SINE B2 -95 121 1 7 991 877 102 204 0 chr9 53341402 53341549 -70734623 - B2_Mm1t SINE B2 -16 177 1 7 991 22 35 0 0 chr9 53341880 53341909 -70734263 + AT_rich Low_complexity Low_complexity 1 29 0 7 991 1162 55 7 0 chr9 53342418 53342563 -70733609 + B1_Mus2 SINE Alu 2 147 0 7 991 309 284 66 73 chr9 53342798 53342935 -70733237 + ID_B1 SINE B4 80 215 -9 7 991 328 143 29 0 chr9 53343034 53343104 -70733068 + GA-rich Low_complexity Low_complexity 5 76 0 7 991 591 115 28 19 chr9 53343110 53343216 -70732956 + B1_Mur3 SINE Alu 42 148 -1 7 991 238 197 40 53 chr9 53343525 53343600 -70732572 + B1F SINE Alu 40 113 -36 7 991 498 103 0 0 chr9 53343762 53343840 -70732332 + (TC)n Simple_repeat Simple_repeat 2 79 0 7 991 180 0 0 0 chr9 53343840 53343860 -70732312 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 992 268 374 55 96 chr9 53346504 53346723 -70729449 - MER20 DNA MER1_type -3 216 7 7 992 342 0 0 0 chr9 53347060 53347098 -70729074 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 992 259 265 127 8 chr9 53347789 53347907 -70728265 - L1MB2 LINE L1 -12 6159 6028 7 992 392 250 130 13 chr9 53348060 53348214 -70727958 - LTR33A_ LTR ERVL 0 531 360 7 992 311 345 111 18 chr9 53348331 53348502 -70727670 - LTR33A_ LTR ERVL -344 187 1 7 992 614 274 35 40 chr9 53348656 53348854 -70727318 - B3A SINE B2 0 198 2 7 992 646 57 11 0 chr9 53349021 53349109 -70727063 - BC1_Mm scRNA scRNA -63 89 1 7 992 243 0 0 0 chr9 53349112 53349139 -70727033 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 992 705 93 246 0 chr9 53349973 53350091 -70726081 - B1_Mus1 SINE Alu 0 148 2 7 992 327 271 50 17 chr9 53350112 53350232 -70725940 - MER106B DNA MER1_type 0 1059 936 7 992 467 296 24 16 chr9 53350720 53350847 -70725325 - RSINE1 SINE B4 -29 136 9 7 992 1672 26 0 0 chr9 53350906 53351096 -70725076 - B2_Mm1a SINE B2 -2 191 2 7 992 211 167 42 0 chr9 53351148 53351196 -70724976 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 7 992 836 252 42 42 chr9 53351388 53351603 -70724569 - B3 SINE B2 -1 215 1 7 992 198 283 0 0 chr9 53351661 53351707 -70724465 - L3b LINE CR1 -3 479 434 7 992 607 268 93 81 chr9 53352086 53352557 -70723615 - L1M4 LINE L1 -779 5367 4891 7 992 794 164 57 0 chr9 53352557 53352697 -70723475 + B1_Mur4 SINE Alu 2 149 -1 7 992 356 264 9 36 chr9 53353475 53353585 -70722587 + PB1 SINE Alu 5 111 -16 7 992 312 330 37 9 chr9 53353675 53353782 -70722390 + PB1D7 SINE Alu 11 120 0 7 992 1117 122 61 0 chr9 53353801 53353981 -70722191 + B2_Mm2 SINE B2 2 192 -3 7 992 1039 103 14 0 chr9 53353985 53354131 -70722041 + B1_Mus1 SINE Alu 1 148 0 7 992 264 255 198 14 chr9 53354256 53354654 -70721518 + L1MC LINE L1 4249 4719 -1427 7 992 297 320 166 7 chr9 53354841 53355130 -70721042 + L1MD3 LINE L1 7653 7987 -8 7 992 397 307 179 0 chr9 53355300 53355440 -70720732 - B3A SINE B2 -27 171 7 7 992 990 217 17 52 chr9 53355680 53355913 -70720259 + URR1B DNA MER1_type 1 225 0 7 992 946 147 0 13 chr9 53357165 53357317 -70718855 + B1_Mur4 SINE Alu 1 150 0 7 992 738 331 18 50 chr9 53358619 53358896 -70717276 + B4A SINE B4 9 276 -16 7 992 228 296 127 0 chr9 53359886 53359957 -70716215 + ID4_ SINE ID 1 80 -3 7 992 271 148 262 0 chr9 53360755 53360816 -70715356 + ID_B1 SINE B4 94 170 -54 7 992 272 0 40 40 chr9 53360939 53360989 -70715183 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 7 992 1139 48 0 20 chr9 53360989 53361129 -70715043 - B1_Mus1 SINE Alu -9 139 1 7 992 274 202 60 0 chr9 53361352 53361436 -70714736 + (TATG)n Simple_repeat Simple_repeat 2 90 0 7 992 672 220 7 14 chr9 53361568 53361711 -70714461 + B1_Mus2 SINE Alu 6 147 0 7 992 225 250 25 62 chr9 53361826 53361907 -70714265 + L2c LINE L2 3295 3372 -15 7 992 251 291 130 29 chr9 53362196 53362334 -70713838 + MER104 DNA Tc2 14 165 -16 7 992 302 329 0 12 chr9 53362763 53362846 -70713326 + ID4_ SINE ID 2 83 0 7 992 211 286 0 0 chr9 53362925 53362995 -70713177 + T-rich Low_complexity Low_complexity 1 70 0 7 992 1177 35 0 14 chr9 53363304 53363451 -70712721 + B1_Mus2 SINE Alu 2 146 -1 7 992 1148 41 7 20 chr9 53364116 53364265 -70711907 - B1_Mm SINE Alu 0 147 1 7 992 21 57 0 0 chr9 53365509 53365544 -70710628 + AT_rich Low_complexity Low_complexity 1 35 0 7 992 184 360 0 0 chr9 53366670 53366720 -70709452 + MER5A DNA MER1_type 29 78 -111 7 992 294 301 57 19 chr9 53366747 53366852 -70709320 + PB1 SINE Alu 1 109 -18 7 992 473 215 65 65 chr9 53366934 53367073 -70709099 + ID_B1 SINE B4 86 224 0 7 992 32 57 0 0 chr9 53367361 53367414 -70708758 + AT_rich Low_complexity Low_complexity 1 53 0 7 992 312 91 0 0 chr9 53367418 53367462 -70708710 + (T)n Simple_repeat Simple_repeat 1 44 0 7 992 1234 41 0 0 chr9 53367462 53367609 -70708563 - B1_Mm SINE Alu 0 147 1 7 992 3114 53 10 2 chr9 53367673 53368066 -70708106 - MTA_Mm LTR MaLR 0 396 1 7 992 853 139 15 0 chr9 53368749 53368886 -70707286 - B1_Mus2 SINE Alu -2 145 7 7 992 259 319 87 0 chr9 53369152 53369221 -70706951 + ID4_ SINE ID 3 77 -6 7 992 257 222 71 47 chr9 53369696 53369781 -70706391 + PB1D10 SINE Alu 27 113 -4 7 992 312 233 41 0 chr9 53371807 53371880 -70704292 + ID4 SINE ID 2 77 -6 7 992 1227 20 7 0 chr9 53372389 53372535 -70703637 + B1_Mus1 SINE Alu 2 148 0 7 992 2091 176 11 82 chr9 53373175 53373626 -70702546 - MTC LTR MaLR 0 421 3 7 992 1430 176 31 99 chr9 53373628 53373814 -70702358 - MTC-int LTR MaLR 0 1258 1089 7 992 824 157 220 6 chr9 53373814 53373987 -70702185 + B3 SINE B2 1 210 -6 7 992 1430 176 31 99 chr9 53373987 53374185 -70701987 - MTC-int LTR MaLR -170 1088 900 7 992 1795 174 161 21 chr9 53374179 53374613 -70701559 - MTC-int LTR MaLR -763 495 1 7 992 310 164 123 0 chr9 53374613 53374686 -70701486 - MTC LTR MaLR 0 419 338 7 992 188 270 62 31 chr9 53375479 53375544 -70700628 + MER5A DNA MER1_type 67 133 -56 7 992 1650 211 110 54 chr9 53375761 53376281 -70699891 - RMER15 LTR ERVL 0 575 27 7 992 327 275 0 0 chr9 53376351 53376471 -70699701 + (TA)n Simple_repeat Simple_repeat 1 120 0 7 992 279 0 0 0 chr9 53376808 53376839 -70699333 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 992 365 227 50 88 chr9 53376918 53377043 -70699129 - B3 SINE B2 0 193 73 7 992 453 154 154 0 chr9 53377259 53377350 -70698822 - B1_Mur3 SINE Alu 0 149 45 7 992 23 54 0 0 chr9 53377950 53377987 -70698185 + AT_rich Low_complexity Low_complexity 1 37 0 7 992 1192 41 0 20 chr9 53379557 53379707 -70696465 + B1_Mus1 SINE Alu 2 148 0 7 992 228 67 0 0 chr9 53379711 53379741 -70696431 + (A)n Simple_repeat Simple_repeat 1 30 0 7 992 500 233 24 32 chr9 53382464 53382588 -70693584 - ID_B1 SINE B4 -8 216 94 7 992 566 212 113 8 chr9 53382620 53382753 -70693419 - B1_Mur1 SINE Alu -1 148 2 7 992 438 331 25 0 chr9 53382881 53383002 -70693170 - B4A SINE B4 -122 170 47 7 992 427 273 36 0 chr9 53383105 53383215 -70692957 - PB1D9 SINE Alu -6 114 1 7 992 356 150 0 0 chr9 53383714 53383774 -70692398 + B1F1 SINE Alu 10 69 -80 7 992 295 213 132 54 chr9 53383838 53383967 -70692205 - B1_Mur3 SINE Alu -8 141 3 7 992 542 266 125 40 chr9 53383994 53384194 -70691978 + RCHARR1 DNA MER1_type 224 440 -534 7 992 266 226 213 35 chr9 53384205 53384379 -70691793 - L1ME3A LINE L1 -7 6166 5962 7 992 734 191 0 29 chr9 53384614 53384754 -70691418 - RMER6B LTR ERVK -5 456 321 7 992 702 132 185 92 chr9 53384800 53384984 -70691188 - RMER6B LTR ERVK -260 201 1 7 992 271 206 115 34 chr9 53385145 53385263 -70690909 - L1ME3A LINE L1 -799 5365 5240 7 992 554 266 8 0 chr9 53386040 53386164 -70690008 + ID_B1 SINE B4 96 220 -4 7 992 267 31 0 0 chr9 53386190 53386222 -70689950 + (TA)n Simple_repeat Simple_repeat 1 32 0 7 992 939 153 194 11 chr9 53386266 53386457 -70689715 + URR1A DNA MER1_type 1 226 0 7 992 573 287 72 13 chr9 53387490 53387642 -70688530 - B3A SINE B2 0 198 38 7 992 447 336 57 77 chr9 53387649 53387897 -70688275 - B4A SINE B4 -49 243 1 7 992 429 262 125 59 chr9 53387903 53388330 -70687842 - L1_Mur3 LINE L1 -480 5400 4963 7 992 370 221 72 24 chr9 53388399 53388524 -70687648 - RLTR12B LTR ERVK -31 497 367 7 992 514 179 0 10 chr9 53388608 53388704 -70687468 - RMER19B LTR ERVK 0 902 808 7 992 805 165 123 97 chr9 53388702 53388971 -70687201 - RMER19B LTR ERVK -410 492 217 7 992 277 228 23 81 chr9 53388996 53389082 -70687090 - ID SINE ID -142 82 2 7 992 278 302 86 30 chr9 53389084 53389282 -70686890 - L1_Mur3 LINE L1 -3706 2437 2229 7 992 641 159 13 74 chr9 53389289 53389438 -70686734 - B1_Mus1 SINE Alu -1 147 8 7 992 237 279 66 0 chr9 53390160 53390221 -70685951 - B3A SINE B2 -107 91 27 7 992 637 194 29 43 chr9 53390228 53390368 -70685804 - B1_Mur3 SINE Alu -1 148 11 7 992 25 65 0 0 chr9 53390461 53390507 -70685665 + AT_rich Low_complexity Low_complexity 1 46 0 7 992 22 56 0 0 chr9 53390525 53390561 -70685611 + AT_rich Low_complexity Low_complexity 1 36 0 7 992 1898 174 58 15 chr9 53390962 53391358 -70684814 + MTC LTR MaLR 1 413 -8 7 992 406 274 105 9 chr9 53392331 53392445 -70683727 + PB1D10 SINE Alu 1 125 -2 7 992 493 274 13 46 chr9 53393119 53393272 -70682900 - B1_Mur3 SINE Alu -1 148 1 7 992 536 171 36 0 chr9 53393368 53393479 -70682693 - URR1B DNA MER1_type 0 225 111 7 992 330 65 0 0 chr9 53393520 53393566 -70682606 - ORR1B2 LTR MaLR -10 384 339 7 992 280 123 92 40 chr9 53393577 53393653 -70682519 - B3 SINE B2 0 216 137 7 992 1528 118 133 17 chr9 53393675 53393968 -70682204 - ORR1B2 LTR MaLR -40 327 1 7 992 287 197 0 4 chr9 53393980 53394040 -70682132 + ORR1B2 LTR MaLR 322 419 0 8 992 386 194 110 24 chr9 53394447 53394574 -70681598 + B1F1 SINE Alu 1 138 -11 8 992 236 234 0 41 chr9 53394577 53394624 -70681548 + ID4_ SINE ID 2 46 -37 8 992 539 118 42 21 chr9 53394624 53394719 -70681453 + MTC LTR MaLR 1 97 -324 8 992 1293 268 133 5 chr9 53394720 53395148 -70681024 + Lx6 LINE L1 6951 7433 -27 8 992 1826 149 48 3 chr9 53395168 53395504 -70680668 + MTC LTR MaLR 70 420 -1 8 992 189 0 0 0 chr9 53396041 53396062 -70680110 + (T)n Simple_repeat Simple_repeat 1 21 0 8 992 922 116 0 0 chr9 53396062 53396200 -70679972 - B1_Mus1 SINE Alu 0 148 11 8 992 382 221 19 87 chr9 53396107 53396211 -70679961 - MT2B LTR ERVL -344 257 161 8 992 585 221 48 48 chr9 53396233 53396380 -70679792 - B1_Mus1 SINE Alu 0 148 2 8 992 851 205 78 10 chr9 53397000 53397192 -70678980 + B3 SINE B2 2 206 -10 8 992 638 194 0 44 chr9 53397529 53397664 -70678508 - B1_Mur2 SINE Alu 0 149 21 8 992 408 321 6 90 chr9 53397985 53398163 -70678009 + RSINE1 SINE B4 3 165 0 8 992 526 240 86 43 chr9 53398188 53398375 -70677797 + B3A SINE B2 2 196 -2 8 992 1385 70 43 5 chr9 53398387 53398574 -70677598 - B2_Mm2 SINE B2 -1 194 1 8 992 617 185 0 25 chr9 53398600 53398722 -70677450 + PB1D9 SINE Alu 2 120 0 8 992 362 270 43 35 chr9 53398833 53398948 -70677224 + RSINE1 SINE B4 33 148 -17 8 992 768 100 25 8 chr9 53399135 53399256 -70676916 + B3 SINE B2 2 124 -92 8 992 21 0 0 0 chr9 53399286 53399307 -70676865 + AT_rich Low_complexity Low_complexity 1 21 0 8 992 422 276 103 0 chr9 53399900 53400045 -70676127 + B3A SINE B2 1 160 -38 8 992 429 76 30 0 chr9 53400501 53400567 -70675605 + B1_Mus2 SINE Alu 80 147 0 8 992 21 0 0 0 chr9 53400567 53400588 -70675584 + AT_rich Low_complexity Low_complexity 1 21 0 8 992 1316 79 6 22 chr9 53400592 53400774 -70675398 + B2_Mm1a SINE B2 1 179 -14 8 992 640 239 7 0 chr9 53400817 53400955 -70675217 + ID_B1 SINE B4 86 224 0 8 992 573 179 12 116 chr9 53401085 53401249 -70674923 - B3 SINE B2 -3 213 67 8 992 437 267 20 46 chr9 53401642 53401795 -70674377 + B3A SINE B2 50 198 0 8 992 736 152 6 110 chr9 53401816 53401979 -70674193 + B1_Mur3 SINE Alu 3 148 -1 8 992 646 210 137 6 chr9 53402000 53402182 -70673990 + B3 SINE B2 5 210 -6 8 992 793 256 43 5 chr9 53402201 53402409 -70673763 + B3 SINE B2 1 216 0 8 992 804 201 112 10 chr9 53402965 53403161 -70673011 - B3 SINE B2 0 216 1 8 992 335 254 0 0 chr9 53403662 53403733 -70672439 + ID2 SINE ID 9 79 -4 8 992 257 231 77 0 chr9 53403667 53403745 -70672427 + B4 SINE B4 14 97 -195 8 992 1146 115 0 0 chr9 53404015 53404189 -70671983 + (CA)n Simple_repeat Simple_repeat 1 174 0 8 992 1565 53 0 0 chr9 53404237 53404425 -70671747 - B2_Mm1t SINE B2 -3 190 3 8 992 276 263 116 0 chr9 53404440 53404535 -70671637 - B1_Mur2 SINE Alu -21 128 23 8 992 1071 86 0 0 chr9 53404572 53404724 -70671448 - B2_Mm1t SINE B2 -39 154 3 8 992 276 263 116 0 chr9 53404741 53404836 -70671336 - B1_Mur2 SINE Alu -21 128 23 8 992 1142 34 0 0 chr9 53404877 53405026 -70671146 - B2_Mm2 SINE B2 -46 149 1 8 992 390 324 12 59 chr9 53405105 53405324 -70670848 + B3A SINE B2 1 208 -8 8 992 457 339 0 0 chr9 53405365 53405489 -70670683 - B3A SINE B2 -62 136 13 8 992 258 32 0 0 chr9 53406406 53406437 -70669735 + (T)n Simple_repeat Simple_repeat 1 31 0 8 992 1178 82 0 0 chr9 53406437 53406584 -70669588 - B1_Mus1 SINE Alu 0 148 2 8 992 818 155 14 21 chr9 53406622 53406767 -70669405 - B1_Mus1 SINE Alu 0 148 5 8 992 3643 167 189 13 chr9 53406818 53407590 -70668582 - RMER13B LTR ERVK 0 908 1 8 992 544 283 90 21 chr9 53407622 53407810 -70668362 - B3 SINE B2 -15 201 1 8 992 2450 114 30 18 chr9 53407848 53408241 -70667931 - L1_Mur2 LINE L1 -220 5657 5260 8 992 1807 113 54 38 chr9 53408241 53408554 -70667618 + Lx4A LINE L1 6741 7058 0 8 992 25 0 0 0 chr9 53408554 53408579 -70667593 + AT_rich Low_complexity Low_complexity 1 25 0 8 992 695 277 76 19 chr9 53408638 53408848 -70667324 - ID_B1 SINE B4 0 224 3 8 992 316 252 100 10 chr9 53408854 53408954 -70667218 - B1F SINE Alu -3 146 38 8 992 1225 41 0 0 chr9 53409021 53409167 -70667005 + B1_Mus1 SINE Alu 1 146 -2 8 992 1509 60 5 0 chr9 53409183 53409368 -70666804 - B2_Mm1a SINE B2 -7 186 1 8 992 288 0 0 0 chr9 53409441 53409473 -70666699 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 992 216 0 0 0 chr9 53409473 53409496 -70666676 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 992 242 183 76 101 chr9 53409661 53409740 -70666432 + ID2 SINE ID 1 77 -6 8 992 230 155 62 94 chr9 53410748 53410812 -70665360 - PB1D10 SINE Alu -2 115 54 8 992 1579 32 21 0 chr9 53410842 53411031 -70665141 - B2_Mm1a SINE B2 0 193 1 8 992 1222 61 0 0 chr9 53411060 53411208 -70664964 + B1_Mus1 SINE Alu 1 148 0 8 992 301 254 15 0 chr9 53411803 53411870 -70664302 + tRNA-Ala-GCY_ tRNA tRNA 4 71 -4 8 992 204 40 0 0 chr9 53412712 53412737 -70663435 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 8 992 3108 235 70 59 chr9 53412845 53413664 -70662508 + RMER1B Other Other 1 828 -238 8 992 225 0 0 0 chr9 53413698 53413723 -70662449 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 8 992 2422 130 51 13 chr9 53414126 53414516 -70661656 - MTB_Mm LTR MaLR 0 407 3 8 992 983 40 0 0 chr9 53414900 53415026 -70661146 + B1_Mus1 SINE Alu 14 139 -9 8 992 280 238 60 0 chr9 53415250 53415334 -70660838 + PB1D10 SINE Alu 28 116 -1 8 992 618 179 89 7 chr9 53415335 53415470 -70660702 + B1_Mus2 SINE Alu 1 146 -1 8 992 1688 26 0 0 chr9 53415633 53415822 -70660350 + B2_Mm1a SINE B2 1 189 -4 8 992 843 73 0 24 chr9 53415926 53416052 -70660120 + B1_Mm SINE Alu 25 147 0 8 992 351 284 19 38 chr9 53416493 53416599 -70659573 - PB1D10 SINE Alu -8 109 6 8 992 269 298 21 11 chr9 53416820 53416915 -70659257 + PB1D10 SINE Alu 3 98 -19 8 992 292 276 0 13 chr9 53416938 53417015 -70659157 + G-rich Low_complexity Low_complexity 3 78 0 8 992 1220 70 0 23 chr9 53417055 53417231 -70658941 - B2_Mm2 SINE B2 -23 172 1 8 992 507 190 103 0 chr9 53417813 53417894 -70658278 + B1_Mus2 SINE Alu 1 93 -54 8 992 405 0 0 0 chr9 53417894 53417939 -70658233 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 992 507 190 103 0 chr9 53417939 53417973 -70658199 + B1_Mus2 SINE Alu 94 127 -20 8 992 270 0 0 0 chr9 53418586 53418616 -70657556 + (A)n Simple_repeat Simple_repeat 1 30 0 8 992 611 176 124 44 chr9 53418962 53419099 -70657073 + B1_Mur2 SINE Alu 2 149 0 8 992 769 170 48 41 chr9 53419189 53419336 -70656836 - B1_Mur2 SINE Alu 0 149 2 8 992 191 61 30 0 chr9 53419535 53419568 -70656604 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 992 409 265 136 48 chr9 53419571 53419777 -70656395 - B4A SINE B4 -68 224 1 8 992 631 281 32 11 chr9 53419790 53419977 -70656195 - B3 SINE B2 -13 203 13 8 992 492 260 16 0 chr9 53419991 53420114 -70656058 - ID_B1 SINE B4 -1 223 99 8 992 527 237 29 7 chr9 53420377 53420508 -70655664 - RSINE1 SINE B4 -21 144 11 8 992 381 214 48 0 chr9 53420508 53420592 -70655580 + PB1D9 SINE Alu 2 89 -31 8 992 450 294 16 23 chr9 53420912 53421041 -70655131 - B1F1 SINE Alu -5 144 17 8 992 716 221 110 6 chr9 53421155 53421337 -70654835 - B3 SINE B2 -15 201 1 8 992 319 255 80 18 chr9 53421378 53421490 -70654682 + PB1D9 SINE Alu 1 119 -1 8 992 389 312 20 27 chr9 53421663 53421811 -70654361 - RSINE1 SINE B4 -16 149 3 8 992 260 245 98 39 chr9 53422431 53422533 -70653639 - PB1 SINE Alu 0 127 20 8 992 344 263 21 57 chr9 53422564 53422581 -70653591 - MT2B LTR ERVL -313 288 223 8 992 465 211 64 0 chr9 53422581 53422690 -70653482 - B1F2 SINE Alu -33 116 1 8 992 344 263 21 57 chr9 53422690 53422705 -70653467 - MT2B LTR ERVL -313 222 153 8 992 22 0 0 0 chr9 53423780 53423802 -70652370 + AT_rich Low_complexity Low_complexity 1 22 0 8 992 34 24 0 0 chr9 53423863 53423904 -70652268 + AT_rich Low_complexity Low_complexity 1 41 0 8 992 31 26 0 0 chr9 53424708 53424746 -70651426 + AT_rich Low_complexity Low_complexity 1 38 0 8 992 218 196 0 0 chr9 53425466 53425517 -70650655 + A-rich Low_complexity Low_complexity 1 51 0 8 992 363 301 32 16 chr9 53426362 53426487 -70649685 - B3 SINE B2 -21 195 69 8 992 416 290 38 25 chr9 53426501 53426660 -70649512 + RSINE1 SINE B4 3 163 -2 8 992 491 212 239 0 chr9 53427108 53427221 -70648951 + B1_Mus2 SINE Alu 1 140 -7 8 992 206 130 65 0 chr9 53427224 53427270 -70648902 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 8 992 413 294 72 0 chr9 53427291 53427444 -70648728 + MER2 DNA MER2_type 81 244 -101 8 992 1128 62 14 0 chr9 53427634 53427780 -70648392 - B1_Mus1 SINE Alu 0 148 1 8 992 310 306 0 0 chr9 53427851 53427923 -70648249 - RSINE1 SINE B4 -8 157 86 9 992 217 116 0 85 chr9 53427944 53427991 -70648181 - B1_Mur4 SINE Alu -9 141 99 9 992 364 313 92 85 chr9 53428334 53428498 -70647674 - RSINE1 SINE B4 0 165 1 9 992 380 248 69 26 chr9 53428532 53428648 -70647524 - RSINE1 SINE B4 -37 128 8 9 992 26 30 0 0 chr9 53428945 53428978 -70647194 + AT_rich Low_complexity Low_complexity 1 33 0 9 992 622 231 40 40 chr9 53429052 53429201 -70646971 - B1_Mur3 SINE Alu 0 149 1 9 992 354 261 0 0 chr9 53430740 53430809 -70645363 + ID4_ SINE ID 11 79 -4 9 992 353 259 204 51 chr9 53431141 53431357 -70644815 + MLT1J LTR MaLR 8 256 -256 9 992 860 242 77 5 chr9 53431495 53431690 -70644482 - B3 SINE B2 -6 210 2 9 992 1574 57 5 0 chr9 53431999 53432191 -70643981 + B2_Mm1a SINE B2 1 193 0 9 992 294 296 116 17 chr9 53432469 53432641 -70643531 + Tigger6a DNA MER2_type 3 191 -892 9 992 27 29 0 0 chr9 53433005 53433039 -70643133 + AT_rich Low_complexity Low_complexity 1 34 0 9 992 223 297 30 30 chr9 53433139 53433205 -70642967 + RSINE1 SINE B4 4 69 -96 9 992 899 202 64 57 chr9 53433223 53433576 -70642596 + RMER10A LTR ERVL 1 437 -5 9 992 526 214 172 16 chr9 53434307 53434435 -70641737 - B1_Mur2 SINE Alu -1 148 1 9 992 535 181 264 18 chr9 53434691 53434854 -70641318 + B3 SINE B2 1 203 -13 9 992 252 154 0 0 chr9 53434881 53434933 -70641239 + CT-rich Low_complexity Low_complexity 1 52 0 9 992 2305 159 24 12 chr9 53435037 53435456 -70640716 + Lx2B LINE L1 6169 6592 -408 9 992 1483 220 114 13 chr9 53435872 53436250 -70639922 + Lx2B LINE L1 6578 6993 -7 9 992 217 329 41 0 chr9 53436368 53436441 -70639731 + ID4_ SINE ID 2 77 -6 9 992 21 0 0 0 chr9 53436533 53436554 -70639618 + AT_rich Low_complexity Low_complexity 1 21 0 9 992 1090 80 0 0 chr9 53436685 53436823 -70639349 - B1_Mus2 SINE Alu -8 139 2 9 992 243 276 52 0 chr9 53436871 53436929 -70639243 - B3A SINE B2 -50 148 88 9 992 738 228 17 100 chr9 53436947 53437186 -70638986 - B4A SINE B4 -55 237 19 9 992 30 45 0 0 chr9 53438077 53438121 -70638051 + AT_rich Low_complexity Low_complexity 1 44 0 9 992 528 169 119 0 chr9 53438144 53438262 -70637910 - B1_Mur4 SINE Alu 0 150 19 9 992 294 292 56 19 chr9 53438265 53438373 -70637799 - PB1D10 SINE Alu 0 117 6 9 992 236 53 26 0 chr9 53438375 53438413 -70637759 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 992 1150 50 7 0 chr9 53438415 53438554 -70637618 - B1_Mm SINE Alu -6 141 2 9 992 812 123 157 18 chr9 53438639 53438805 -70637367 - B2_Mm2 SINE B2 -6 189 1 9 992 321 244 134 22 chr9 53439622 53439756 -70636416 + B1_Mur1 SINE Alu 1 149 0 9 992 601 314 6 29 chr9 53439770 53439944 -70636228 + B3 SINE B2 1 170 -46 9 992 387 0 0 0 chr9 53439946 53439989 -70636183 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 9 992 676 251 33 112 chr9 53439991 53440233 -70635939 + ID_B1 SINE B4 2 224 0 9 992 22 35 0 0 chr9 53440342 53440371 -70635801 + AT_rich Low_complexity Low_complexity 1 29 0 9 992 25 31 0 0 chr9 53440672 53440704 -70635468 + AT_rich Low_complexity Low_complexity 1 32 0 9 992 306 307 19 19 chr9 53440962 53441065 -70635107 + L2 LINE L2 1432 1534 -1885 9 992 312 245 277 0 chr9 53441142 53441236 -70634936 + RSINE1 SINE B4 11 130 -35 9 992 783 155 34 27 chr9 53441313 53441459 -70634713 + B1_Mus2 SINE Alu 1 147 0 9 992 329 190 51 0 chr9 53442297 53442376 -70633796 - PB1D9 SINE Alu -1 119 37 9 992 717 194 21 7 chr9 53442514 53442659 -70633513 - B1_Mur4 SINE Alu -2 148 2 9 992 216 376 79 8 chr9 53442691 53442817 -70633355 - RSINE1 SINE B4 -3 162 28 9 992 300 196 367 32 chr9 53443587 53443745 -70632427 - B3 SINE B2 -5 211 1 9 992 252 278 0 0 chr9 53443995 53444056 -70632116 + B1F1 SINE Alu 3 63 -86 9 992 1485 75 21 0 chr9 53444139 53444327 -70631845 + B2_Mm1t SINE B2 2 193 0 9 992 1086 210 50 10 chr9 53444610 53444812 -70631360 - B3 SINE B2 -5 211 2 9 992 563 168 29 10 chr9 53445195 53445297 -70630875 - B1_Mus2 SINE Alu -43 104 1 9 992 357 304 80 9 chr9 53445196 53445309 -70630863 - B4 SINE B4 -98 194 74 9 992 569 155 69 0 chr9 53445652 53445768 -70630404 - B1_Mus1 SINE Alu 0 148 25 9 992 330 260 238 17 chr9 53445888 53446060 -70630112 - B3 SINE B2 -6 210 1 9 992 281 197 229 0 chr9 53446129 53446190 -70629982 - B3 SINE B2 -141 75 1 9 992 1199 106 76 22 chr9 53446457 53446641 -70629531 - B2_Mm2 SINE B2 -1 194 1 9 992 261 211 0 66 chr9 53446902 53446923 -70629249 + T-rich Low_complexity Low_complexity 53 71 0 9 992 919 70 102 58 chr9 53446923 53447060 -70629112 - B1_Mus2 SINE Alu -3 144 2 9 992 261 211 0 66 chr9 53447060 53447114 -70629058 + T-rich Low_complexity Low_complexity 1 52 0 9 992 27 0 0 0 chr9 53447114 53447141 -70629031 + AT_rich Low_complexity Low_complexity 1 27 0 9 992 264 283 36 17 chr9 53447195 53447287 -70628885 + ID4 SINE ID 3 93 -59 9 992 822 21 0 0 chr9 53447287 53447383 -70628789 + (TG)n Simple_repeat Simple_repeat 1 96 0 9 992 487 284 42 17 chr9 53447401 53447519 -70628653 + RSINE1 SINE B4 45 165 0 9 992 27 49 0 0 chr9 53448411 53448452 -70627720 + AT_rich Low_complexity Low_complexity 1 41 0 9 992 24 32 0 0 chr9 53448497 53448528 -70627644 + AT_rich Low_complexity Low_complexity 1 31 0 9 992 467 250 70 26 chr9 53448537 53448652 -70627520 - RSINE1 SINE B4 -26 139 20 9 992 202 200 0 0 chr9 53448810 53448845 -70627327 + CT-rich Low_complexity Low_complexity 2 36 0 9 992 255 339 15 0 chr9 53448973 53449038 -70627134 - RSINE1 SINE B4 -8 157 92 9 992 323 342 64 32 chr9 53449040 53449197 -70626975 - B4 SINE B4 -126 166 5 9 992 1307 135 5 5 chr9 53449346 53449540 -70626632 + B2_Mm2 SINE B2 1 194 -1 9 992 1221 58 0 0 chr9 53449667 53449804 -70626368 + B1_Mm SINE Alu 1 137 -10 9 992 180 0 0 0 chr9 53449804 53449824 -70626348 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9 992 564 214 87 0 chr9 53450194 53450297 -70625875 + B3 SINE B2 3 114 -102 9 992 1036 67 73 15 chr9 53450298 53450434 -70625738 + B1_Mus2 SINE Alu 3 146 -1 9 992 1312 41 0 0 chr9 53450963 53451110 -70625062 - B1_Mus2 SINE Alu 0 147 1 9 992 470 317 43 14 chr9 53451450 53451591 -70624581 + RSINE1 SINE B4 4 148 -17 9 992 242 361 0 0 chr9 53451599 53451682 -70624490 + ID4 SINE ID 1 83 0 9 992 1335 80 62 0 chr9 53451798 53451974 -70624198 + B2_Mm2 SINE B2 2 188 -7 9 992 281 284 12 166 chr9 53452828 53452997 -70623175 + MT2B2 LTR ERVL 115 257 -327 9 992 380 276 30 101 chr9 53452870 53452897 -70623275 + ID_B1 SINE B4 67 221 -1 9 992 690 157 43 43 chr9 53452897 53453037 -70623135 + B1_Mur4 SINE Alu 11 150 0 9 992 1243 89 47 6 chr9 53454542 53454712 -70621460 + B2_Mm2 SINE B2 1 177 -18 9 992 267 271 12 117 chr9 53455050 53455152 -70621020 + L1MB7 LINE L1 5640 5734 -444 9 992 636 197 57 0 chr9 53455152 53455274 -70620898 + B1_Mus2 SINE Alu 1 129 -18 9 992 267 271 113 82 chr9 53455274 53455471 -70620701 + L1MB7 LINE L1 5735 5965 -219 9 992 1499 65 21 16 chr9 53455471 53455660 -70620512 + B2_Mm2 SINE B2 2 191 -4 9 992 207 0 0 0 chr9 53455682 53455705 -70620467 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 9 992 708 194 67 7 chr9 53455961 53456096 -70620076 - B1_Mur1 SINE Alu -6 143 1 9 992 293 302 46 19 chr9 53456217 53456325 -70619847 + MLT1H LTR MaLR 107 217 -332 9 992 271 274 54 14 chr9 53456540 53456614 -70619558 + ID4_ SINE ID 2 78 -5 9 992 484 308 95 76 chr9 53456662 53456820 -70619352 + RSINE1 SINE B4 4 164 -1 9 992 225 0 0 0 chr9 53456825 53456850 -70619322 + (A)n Simple_repeat Simple_repeat 1 25 0 9 992 815 197 22 14 chr9 53457148 53457287 -70618885 - B1_Mur3 SINE Alu -9 140 1 9 992 770 115 52 44 chr9 53457358 53457494 -70618678 + B1_Mur4 SINE Alu 13 149 -1 9 992 191 204 20 0 chr9 53457496 53457545 -70618627 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 9 992 1221 77 0 0 chr9 53458592 53458735 -70617437 + B1_Mus1 SINE Alu 1 143 -5 9 992 393 339 69 75 chr9 53459021 53459209 -70616963 - ID_B1 SINE B4 -100 192 6 9 992 1382 94 61 0 chr9 53459209 53459390 -70616782 + B2_Mm2 SINE B2 2 193 -2 9 992 289 286 108 23 chr9 53459515 53459644 -70616528 + RSINE1 SINE B4 26 165 0 9 992 25 51 0 0 chr9 53459656 53459695 -70616477 + AT_rich Low_complexity Low_complexity 1 39 0 9 992 720 76 17 17 chr9 53459842 53459936 -70616236 + (TTTC)n Simple_repeat Simple_repeat 1 93 0 9 992 1344 97 22 0 chr9 53459936 53460121 -70616051 - B2_Mm2 SINE B2 -5 190 2 9 992 720 76 17 17 chr9 53460121 53460146 -70616026 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 9 992 685 209 57 7 chr9 53460158 53460298 -70615874 + B1_Mur3 SINE Alu 3 149 0 9 992 2700 64 112 0 chr9 53460316 53460692 -70615480 - L1_Mus4 LINE L1 -436 6200 5783 9 992 8263 45 7 0 chr9 53460706 53462115 -70614057 - L1Md_F2 LINE L1 -2 6580 5161 9 992 1148 76 7 27 chr9 53462115 53462264 -70613908 - B1_Mus1 SINE Alu 0 148 3 1 992 2410 88 3 0 chr9 53462266 53462583 -70613589 - L1_Mus4 LINE L1 -87 5796 5479 9 992 556 258 83 38 chr9 53462621 53462754 -70613418 - RSINE1 SINE B4 -24 141 3 1 992 350 239 66 33 chr9 53462754 53462843 -70613329 - B4 SINE B4 -197 95 4 1 992 587 257 56 51 chr9 53462862 53463059 -70613113 - B3A SINE B2 0 198 1 1 992 731 234 7 14 chr9 53463089 53463236 -70612936 + B1_Mm SINE Alu 1 146 -1 1 992 715 186 28 21 chr9 53463661 53463804 -70612368 - B1_Mur4 SINE Alu -2 148 5 1 992 856 183 14 14 chr9 53463853 53463997 -70612175 + B1_Mur4 SINE Alu 1 144 -6 1 992 328 298 54 62 chr9 53464093 53464222 -70611950 + B4A SINE B4 88 215 -77 1 992 330 236 14 0 chr9 53464308 53464380 -70611792 - B4 SINE B4 -219 73 1 1 992 462 294 100 16 chr9 53464718 53464908 -70611264 + MER68-int LTR ERVL 2191 2396 -594 1 992 215 294 59 0 chr9 53465227 53465278 -70610894 - ID4_ SINE ID -16 67 14 1 992 1399 91 27 5 chr9 53465319 53465507 -70610665 + B2_Mm2 SINE B2 2 193 -2 1 992 313 236 21 73 chr9 53465534 53465630 -70610542 + B2_Mm2 SINE B2 1 91 -104 1 992 426 309 0 0 chr9 53465610 53465720 -70610452 + B3 SINE B2 106 215 -1 1 992 601 329 103 96 chr9 53465870 53466169 -70610003 + MER68 LTR ERVL 16 328 -235 1 992 1182 196 49 0 chr9 53466169 53466373 -70609799 + B3 SINE B2 3 216 0 1 992 601 329 103 96 chr9 53466373 53466490 -70609682 + MER68 LTR ERVL 329 435 -128 1 992 1076 44 73 15 chr9 53466886 53467023 -70609149 + B1_Mm SINE Alu 3 147 0 1 992 305 308 62 37 chr9 53467572 53467734 -70608438 + MER77 LTR ERVL 401 566 -41 1 992 609 318 53 0 chr9 53467818 53468007 -70608165 + B3 SINE B2 4 202 -14 1 992 565 191 173 8 chr9 53468041 53468168 -70608004 + B1_Mur2 SINE Alu 2 149 0 1 992 830 177 49 7 chr9 53468236 53468378 -70607794 - B1_Mus1 SINE Alu 0 148 1 1 992 380 336 31 8 chr9 53468957 53469086 -70607086 - RSINE1 SINE B4 -31 134 3 1 992 753 129 35 35 chr9 53469139 53469283 -70606889 - B1_Mur4 SINE Alu 0 150 7 1 992 552 268 20 40 chr9 53469717 53469865 -70606307 + B1_Mur2 SINE Alu 1 145 -4 1 992 672 260 57 45 chr9 53470046 53470223 -70605949 - B3 SINE B2 -34 182 4 1 992 1531 65 27 0 chr9 53470234 53470420 -70605752 - B2_Mm2 SINE B2 -4 191 1 1 992 278 194 24 132 chr9 53470426 53470509 -70605663 - PB1D9 SINE Alu -5 115 42 1 992 1443 78 17 0 chr9 53470723 53470902 -70605270 - B2_Mm2 SINE B2 -12 183 2 1 992 1500 54 11 16 chr9 53470908 53470936 -70605236 - B2_Mm1t SINE B2 -5 188 161 1 992 207 0 0 0 chr9 53470936 53470959 -70605213 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 992 1500 54 11 16 chr9 53470959 53471118 -70605054 - B2_Mm1t SINE B2 -33 160 2 1 992 180 0 0 0 chr9 53471133 53471153 -70605019 + (A)n Simple_repeat Simple_repeat 1 20 0 1 992 605 129 19 29 chr9 53471159 53471263 -70604909 + B1_Mur3 SINE Alu 34 136 -13 1 992 189 0 0 0 chr9 53471263 53471284 -70604888 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 1 992 537 144 17 51 chr9 53471284 53471296 -70604876 + B1_Mm SINE Alu 135 146 -1 1 992 578 288 101 21 chr9 53471299 53471487 -70604685 + B4 SINE B4 88 290 -2 1 992 319 215 61 14 chr9 53473581 53473687 -70602485 + B1_Mur4 SINE Alu 31 140 -7 1 992 353 196 44 142 chr9 53473778 53473859 -70602313 - PB1D9 SINE Alu -9 111 40 1 992 978 60 302 0 chr9 53473859 53474008 -70602164 + B2_Mm2 SINE B2 2 195 0 1 992 353 196 44 142 chr9 53474008 53474039 -70602133 - PB1D9 SINE Alu -81 39 10 1 992 325 231 135 40 chr9 53474086 53474212 -70601960 + B1_Mur1 SINE Alu 1 138 -11 1 992 199 0 0 61 chr9 53474225 53474258 -70601914 + (TTA)n Simple_repeat Simple_repeat 1 31 0 1 992 752 177 35 21 chr9 53476100 53476244 -70599928 - B1_Mur4 SINE Alu -2 148 3 1 992 540 205 120 0 chr9 53476284 53476401 -70599771 + B1_Mur3 SINE Alu 19 149 0 1 992 234 235 0 19 chr9 53476432 53476484 -70599688 + MER5A1 DNA MER1_type 37 87 -79 1 992 560 198 32 32 chr9 53476562 53476687 -70599485 - B1_Mur1 SINE Alu -22 127 3 1 992 391 146 311 11 chr9 53476719 53476809 -70599363 + PB1D9 SINE Alu 2 118 -2 1 992 1522 75 16 0 chr9 53476845 53477031 -70599141 + B2_Mm2 SINE B2 2 190 -5 1 992 188 378 0 0 chr9 53477046 53477120 -70599052 + MIRb SINE MIR 121 194 -74 1 992 24 0 0 0 chr9 53477156 53477180 -70598992 + AT_rich Low_complexity Low_complexity 1 24 0 1 992 837 110 17 8 chr9 53477216 53477335 -70598837 + PB1D9 SINE Alu 1 120 0 1 993 784 162 34 34 chr9 53477378 53477525 -70598647 - B1_Mus2 SINE Alu 0 147 1 1 993 239 262 54 97 chr9 53477717 53477810 -70598362 + B3 SINE B2 104 192 -24 1 993 758 278 127 41 chr9 53477747 53478163 -70598009 - RLTR20C LTR ERVK -29 505 54 1 993 1137 242 26 92 chr9 53478394 53478564 -70597608 - RMER15-int LTR ERVL -120 4879 4715 1 993 1238 48 0 13 chr9 53478564 53478713 -70597459 + B1_Mm SINE Alu 1 147 0 1 993 1137 242 26 92 chr9 53478713 53478933 -70597239 - RMER15-int LTR ERVL -285 4714 4515 1 993 505 167 127 18 chr9 53478968 53479078 -70597094 + B1_Mus1 SINE Alu 3 124 -24 1 993 289 355 0 113 chr9 53479078 53479307 -70596865 - MuLV-int LTR ERV1 -3377 4229 4027 1 993 578 322 95 69 chr9 53479369 53480226 -70595946 - RLTR6-int LTR ERV1 -5363 2415 1647 1 993 234 241 37 0 chr9 53480868 53480922 -70595250 - RLTR41 LTR ERV1 -390 56 1 1 993 653 48 0 0 chr9 53481045 53481129 -70595043 - B1_Mus2 SINE Alu -62 85 2 1 993 1563 196 231 14 chr9 53481264 53481682 -70594490 - RMER20A LTR ERVK -7 509 1 1 993 375 118 130 14 chr9 53482011 53482080 -70594092 + B1_Mm SINE Alu 71 147 0 1 993 405 251 19 47 chr9 53482124 53482242 -70593930 - PB1D9 SINE Alu -20 128 17 1 993 837 160 33 46 chr9 53482375 53482526 -70593646 + B1_Mur3 SINE Alu 1 149 0 1 993 281 82 0 20 chr9 53482527 53482577 -70593595 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 1 993 1133 109 0 0 chr9 53482592 53482739 -70593433 - B1_Mus1 SINE Alu 0 148 2 1 993 369 0 0 0 chr9 53482884 53482925 -70593247 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 993 864 256 43 5 chr9 53482926 53483111 -70593061 - B3 SINE B2 -23 193 2 1 993 1141 186 5 0 chr9 53483124 53483318 -70592854 - B2_Mm2 SINE B2 0 195 1 1 993 1173 103 5 32 chr9 53483347 53483508 -70592664 + B2_Mm2 SINE B2 1 162 -33 1 993 209 57 0 28 chr9 53483508 53483544 -70592628 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 993 1173 103 5 32 chr9 53483544 53483572 -70592600 + B2_Mm2 SINE B2 163 185 -10 1 993 1820 172 127 36 chr9 53483660 53483963 -70592209 - MTC LTR MaLR 0 421 97 1 993 1336 88 38 5 chr9 53483963 53484147 -70592025 - B2_Mm2 SINE B2 -5 190 1 1 993 1820 172 127 36 chr9 53484147 53484229 -70591943 - MTC LTR MaLR -325 96 1 1 993 5545 125 58 167 chr9 53484238 53484626 -70591546 - RLTR13D3 LTR ERVK 0 1114 878 1 993 216 0 0 0 chr9 53484626 53484650 -70591522 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1 993 5545 125 58 167 chr9 53484650 53485512 -70590660 - RLTR13D3 LTR ERVK -237 877 1 1 993 599 241 0 49 chr9 53485615 53485737 -70590435 - B1_Mur3 SINE Alu -33 116 1 1 993 386 283 70 10 chr9 53485745 53485845 -70590327 - PB1D9 SINE Alu -14 106 1 1 993 595 295 19 25 chr9 53485852 53486012 -70590160 - RSINE1 SINE B4 -5 160 2 1 993 593 254 188 0 chr9 53486493 53486658 -70589514 + B3 SINE B2 1 196 -20 1 993 609 14 0 0 chr9 53486777 53486847 -70589325 + (CAAAA)n Simple_repeat Simple_repeat 3 72 0 1 993 461 171 250 25 chr9 53486961 53487081 -70589091 - B1_Mm SINE Alu 0 147 1 1 993 1030 88 62 6 chr9 53487095 53487255 -70588917 - B2_Mm2 SINE B2 0 195 27 1 993 607 332 49 0 chr9 53487256 53487500 -70588672 + HERV16-int LTR ERVL 976 1231 -3765 1 993 1524 69 32 0 chr9 53487768 53487956 -70588216 - B2_Mm2 SINE B2 0 195 2 1 993 594 0 0 0 chr9 53487973 53488039 -70588133 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1 993 792 62 9 35 chr9 53488039 53488146 -70588026 - B1_Mus1 SINE Alu -21 127 24 1 993 691 194 49 35 chr9 53488185 53488329 -70587843 + B1_Mus1 SINE Alu 2 147 -1 1 993 1259 79 72 17 chr9 53488331 53488511 -70587661 + B2_Mm2 SINE B2 2 191 -4 1 993 390 42 0 0 chr9 53488515 53488563 -70587609 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1 993 403 265 0 0 chr9 53488579 53488681 -70587491 - L1MA7 LINE L1 -30 6261 6160 1 993 433 258 38 25 chr9 53488676 53488835 -70587337 - L1MA7 LINE L1 -237 6054 5894 1 993 735 159 99 38 chr9 53488964 53489095 -70587077 - B1_Mur2 SINE Alu -7 142 4 1 993 485 284 34 88 chr9 53489097 53489336 -70586836 + MLT2B4 LTR ERVL 99 324 -232 1 993 1264 77 0 0 chr9 53489885 53490053 -70586119 - B2_Mm2 SINE B2 -27 168 1 1 993 35 54 0 0 chr9 53491150 53491206 -70584966 + AT_rich Low_complexity Low_complexity 1 56 0 1 993 723 209 8 15 chr9 53491216 53491347 -70584825 - B1_Mur1 SINE Alu -6 143 14 1 993 535 198 0 11 chr9 53491541 53491633 -70584539 - B1_Mur4 SINE Alu -17 133 43 1 993 182 62 31 0 chr9 53491741 53491773 -70584399 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 993 494 230 18 9 chr9 53492930 53493044 -70583128 + B1_Mur1 SINE Alu 22 136 -13 1 993 270 204 148 0 chr9 53493068 53493122 -70583050 + PB1D9 SINE Alu 1 62 -58 1 993 229 300 50 0 chr9 53493717 53493777 -70582395 - tRNA-Ala-GCG tRNA tRNA -7 68 6 1 993 709 275 19 12 chr9 53493845 53494007 -70582165 - RSINE1 SINE B4 0 165 3 1 993 688 175 95 0 chr9 53495155 53495292 -70580880 + ID_B1 SINE B4 5 154 -70 1 993 975 249 8 45 chr9 53495294 53495538 -70580634 + B4 SINE B4 2 236 -56 1 993 619 189 94 0 chr9 53495540 53495667 -70580505 + B1_Mus1 SINE Alu 10 148 0 1 993 412 122 24 0 chr9 53495729 53495811 -70580361 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 993 3187 206 78 36 chr9 53495978 53496940 -70579232 - RMER1C Other Other 0 1342 1 1 993 698 189 16 0 chr9 53497013 53497135 -70579037 - RMER1B Other Other -352 714 591 1 993 368 274 194 0 chr9 53497154 53497278 -70578894 - B1F1 SINE Alu -1 148 1 1 993 276 102 0 0 chr9 53497550 53497599 -70578573 + (T)n Simple_repeat Simple_repeat 1 49 0 1 993 318 26 0 0 chr9 53498429 53498468 -70577704 + (T)n Simple_repeat Simple_repeat 1 39 0 1 993 1291 21 14 0 chr9 53498469 53498614 -70577558 - B1_Mm SINE Alu 0 147 1 1 993 469 291 156 0 chr9 53498666 53498807 -70577365 - RSINE1 SINE B4 -2 163 1 1 993 556 333 29 59 chr9 53498902 53499106 -70577066 + B3A SINE B2 1 198 0 1 993 1232 186 166 15 chr9 53499108 53499328 -70576844 + Lx9 LINE L1 7244 7515 -129 1 993 411 21 0 0 chr9 53499328 53499376 -70576796 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 993 1232 186 166 15 chr9 53499376 53499487 -70576685 + Lx9 LINE L1 7516 7624 -20 1 993 234 278 7 36 chr9 53499494 53499528 -70576644 + ORR1B1-int LTR MaLR 619 648 -861 1 993 738 132 88 0 chr9 53499528 53499642 -70576530 + B1_Mus1 SINE Alu 2 125 -23 1 993 224 59 29 0 chr9 53499812 53499846 -70576326 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 993 1350 66 50 0 chr9 53500087 53500115 -70576057 - B2_Mm1a SINE B2 -1 192 156 1 993 189 0 0 0 chr9 53500115 53500136 -70576036 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2 993 1350 66 50 0 chr9 53500136 53500289 -70575883 - B2_Mm1a SINE B2 -38 155 3 1 993 255 286 56 14 chr9 53500313 53500384 -70575788 - ID4_ SINE ID -9 74 1 3 993 577 217 7 44 chr9 53500736 53500871 -70575301 + RSINE1 SINE B4 2 131 -34 4 993 21 36 0 0 chr9 53500888 53500916 -70575256 + AT_rich Low_complexity Low_complexity 1 28 0 5 993 244 328 32 32 chr9 53501074 53501200 -70574972 + L2b LINE L2 3250 3375 0 6 993 535 239 0 34 chr9 53501493 53501610 -70574562 + PB1D9 SINE Alu 1 113 -7 7 993 207 100 0 0 chr9 53501610 53501640 -70574532 + (CAT)n Simple_repeat Simple_repeat 2 31 0 8 993 312 277 12 24 chr9 53501642 53501727 -70574445 - RSINE1 SINE B4 0 165 82 9 993 2108 139 15 66 chr9 53501744 53502151 -70574021 - ORR1B1 LTR MaLR -8 386 1 1 993 356 343 79 48 chr9 53502332 53502363 -70573809 + ERVL-E-int LTR ERVL 3076 3109 -2376 1 993 1123 146 171 5 chr9 53502363 53502556 -70573616 + URR1B DNA MER1_type 1 225 0 1 993 556 344 79 46 chr9 53502556 53502855 -70573317 + ERVL-E-int LTR ERVL 3039 3399 -2086 1 993 957 112 0 0 chr9 53502928 53503162 -70573010 + (GA)n Simple_repeat Simple_repeat 1 234 0 1 993 262 255 165 10 chr9 53504108 53504211 -70571961 - PB1D7 SINE Alu 0 120 2 1 993 356 374 20 0 chr9 53504248 53504395 -70571777 + ERVL-E-int LTR ERVL 4769 4918 -749 1 993 577 281 26 87 chr9 53504558 53504753 -70571419 - B3A SINE B2 -4 194 12 1 993 432 0 0 0 chr9 53504756 53504804 -70571368 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 993 1320 81 40 0 chr9 53504873 53505047 -70571125 + B2_Mm2 SINE B2 1 181 -14 1 993 1253 102 17 6 chr9 53505047 53505225 -70570947 + B2_Mm2 SINE B2 2 181 -14 1 993 234 224 50 33 chr9 53505561 53505621 -70570551 - ORR1E LTR MaLR -290 69 9 1 993 1132 68 0 26 chr9 53505656 53505807 -70570365 - B1_Mus1 SINE Alu 0 148 2 2 993 286 233 11 65 chr9 53505815 53505907 -70570265 - L1MB1 LINE L1 -47 6121 6035 2 993 321 217 181 0 chr9 53505995 53506078 -70570094 - B1F1 SINE Alu -50 99 2 2 993 242 256 10 72 chr9 53507172 53507201 -70568971 - RSINE1 SINE B4 -73 92 69 2 993 494 240 10 0 chr9 53507201 53507301 -70568871 + PB1D10 SINE Alu 1 101 -16 2 993 337 213 0 1 chr9 53507301 53507368 -70568804 - B4A SINE B4 -97 68 1 2 993 454 257 29 0 chr9 53507471 53507576 -70568596 + B3 SINE B2 73 180 -36 2 993 450 0 0 0 chr9 53507593 53507643 -70568529 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 993 1189 48 7 0 chr9 53507737 53507882 -70568290 + B1_Mus2 SINE Alu 2 147 0 2 993 837 126 0 40 chr9 53507910 53508034 -70568138 + 5S rRNA rRNA 1 119 -2 2 993 945 95 6 25 chr9 53508036 53508198 -70567974 + (GAAAA)n Simple_repeat Simple_repeat 2 160 0 2 993 280 250 18 135 chr9 53508200 53508311 -70567861 + ID_B1 SINE B4 115 212 -12 3 993 1161 69 0 7 chr9 53508333 53508479 -70567693 - B1_Mus2 SINE Alu -2 145 1 3 993 436 283 38 50 chr9 53508883 53509043 -70567129 + B4A SINE B4 6 163 -129 3 993 234 0 0 0 chr9 53509211 53509237 -70566935 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3 993 362 250 135 0 chr9 53509369 53509465 -70566707 - PB1D10 SINE Alu -8 109 1 3 993 21 36 0 0 chr9 53509475 53509503 -70566669 + AT_rich Low_complexity Low_complexity 1 28 0 3 993 1158 82 14 0 chr9 53509503 53509649 -70566523 - B1_Mus1 SINE Alu 0 148 1 3 993 244 261 0 14 chr9 53509955 53510025 -70566147 - MLT1A1 LTR MaLR -4 404 336 3 993 538 226 68 25 chr9 53510307 53510425 -70565747 - RSINE1 SINE B4 -40 125 3 3 993 441 196 103 0 chr9 53510703 53510810 -70565362 + B1_Mus2 SINE Alu 6 123 -24 3 993 207 197 32 16 chr9 53510825 53510887 -70565285 + A-rich Low_complexity Low_complexity 3 65 0 4 993 225 0 0 0 chr9 53511076 53511101 -70565071 + (CAAAT)n Simple_repeat Simple_repeat 4 28 0 4 993 704 221 14 7 chr9 53511117 53511263 -70564909 - B1_Mur1 SINE Alu 0 149 3 4 993 382 286 92 0 chr9 53511271 53511369 -70564803 - PB1D10 SINE Alu -6 111 5 4 993 184 283 75 0 chr9 53512169 53512222 -70563950 - MIR3 SINE MIR -24 184 128 4 993 189 74 0 0 chr9 53512412 53512439 -70563733 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 993 588 71 0 0 chr9 53512442 53512526 -70563646 - B1_Mus2 SINE Alu -63 84 1 4 993 243 252 51 93 chr9 53512526 53512614 -70563558 - MT2B LTR ERVL -344 257 175 4 993 358 159 0 31 chr9 53512555 53512620 -70563552 - B1_Mur3 SINE Alu -82 67 5 4 993 1228 89 0 82 chr9 53512822 53513017 -70563155 - B2_Mm1t SINE B2 -14 179 1 4 993 561 210 97 14 chr9 53515182 53515327 -70560845 + ID_B1 SINE B4 2 158 -66 5 993 523 178 3 21 chr9 53515329 53515438 -70560734 + B1_Mus2 SINE Alu 22 122 -25 5 993 655 62 10 10 chr9 53515637 53515735 -70560437 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 5 993 740 168 8 0 chr9 53515752 53515883 -70560289 - B1_Mur3 SINE Alu 0 149 18 5 993 198 0 0 0 chr9 53515883 53515905 -70560267 + (CCA)n Simple_repeat Simple_repeat 2 23 0 5 993 354 200 0 0 chr9 53516334 53516410 -70559762 + CT-rich Low_complexity Low_complexity 16 91 0 5 993 1616 47 0 5 chr9 53516410 53516603 -70559569 - B2_Mm1a SINE B2 -1 192 1 5 993 354 200 0 0 chr9 53516603 53516616 -70559556 + polypyrimidine Low_complexity Low_complexity 3 15 0 5 993 464 260 103 7 chr9 53516621 53516776 -70559396 - B3 SINE B2 -19 197 28 5 993 834 45 5 73 chr9 53517004 53517196 -70558976 + (TTC)n Simple_repeat Simple_repeat 1 179 0 5 993 708 162 13 7 chr9 53517198 53517347 -70558825 + CT-rich Low_complexity Low_complexity 1 150 0 6 993 256 229 28 14 chr9 53517663 53517734 -70558438 + B4A SINE B4 1 72 -220 6 993 486 0 0 0 chr9 53517893 53517947 -70558225 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 6 993 26 50 0 0 chr9 53517958 53517998 -70558174 + AT_rich Low_complexity Low_complexity 1 40 0 6 993 1047 78 45 7 chr9 53518012 53518167 -70558005 - B2_Mm2 SINE B2 -34 161 1 6 993 740 282 69 0 chr9 53518185 53518387 -70557785 - B3 SINE B2 0 216 1 6 993 581 158 217 0 chr9 53518944 53519064 -70557108 + B1_Mus1 SINE Alu 1 146 -2 6 993 1308 62 85 0 chr9 53519070 53519246 -70556926 + B2_Mm2 SINE B2 2 192 -3 6 993 459 78 0 0 chr9 53519254 53519318 -70556854 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 6 993 3976 124 9 31 chr9 53519339 53519559 -70556613 - L1_Mur2 LINE L1 -552 5325 5114 6 993 267 31 0 0 chr9 53519559 53519591 -70556581 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 993 1119 67 0 0 chr9 53519591 53519726 -70556446 - B1_Mus1 SINE Alu -13 135 1 7 993 3976 124 9 31 chr9 53519726 53520145 -70556027 - L1_Mur2 LINE L1 -764 5113 4700 6 993 6912 154 59 26 chr9 53520145 53521354 -70554818 + Lx5 LINE L1 5705 6953 -97 7 993 23 33 0 0 chr9 53521374 53521404 -70554768 + AT_rich Low_complexity Low_complexity 1 30 0 7 993 327 272 0 72 chr9 53521411 53521522 -70554650 + PB1D10 SINE Alu 15 117 0 7 993 183 42 0 0 chr9 53521617 53521641 -70554531 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 7 993 409 171 102 20 chr9 53521641 53521744 -70554428 - B1_Mus2 SINE Alu -13 134 6 7 993 185 94 0 30 chr9 53522453 53522486 -70553686 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 7 993 233 149 26 51 chr9 53522493 53522571 -70553601 + T-rich Low_complexity Low_complexity 3 78 0 7 993 394 248 75 2 chr9 53522631 53522832 -70553340 - L1MA6 LINE L1 -418 5885 5619 7 993 1967 183 85 3 chr9 53522834 53523223 -70552949 + MTC LTR MaLR 1 421 0 8 993 189 171 0 0 chr9 53523225 53523260 -70552912 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 8 993 373 243 199 0 chr9 53523441 53523577 -70552595 - RSINE1 SINE B4 0 165 3 8 993 465 19 0 0 chr9 53523845 53523899 -70552273 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 993 189 0 0 0 chr9 53523965 53523986 -70552186 + (TC)n Simple_repeat Simple_repeat 1 21 0 8 993 195 125 0 0 chr9 53523987 53524027 -70552145 + (TA)n Simple_repeat Simple_repeat 2 41 0 8 993 21 71 0 0 chr9 53524449 53524491 -70551681 + AT_rich Low_complexity Low_complexity 1 42 0 8 993 416 236 5 162 chr9 53524705 53524866 -70551306 - Lx9 LINE L1 -468 7176 6906 8 993 25 0 0 0 chr9 53524869 53524894 -70551278 + AT_rich Low_complexity Low_complexity 1 25 0 8 993 713 196 98 93 chr9 53524898 53525112 -70551060 - B3 SINE B2 0 216 2 8 993 1724 196 208 27 chr9 53525149 53525600 -70550572 + MT2A LTR ERVL 1 533 0 9 993 1356 7 0 0 chr9 53526080 53526233 -70549939 + (GAA)n Simple_repeat Simple_repeat 3 155 0 9 993 688 0 0 0 chr9 53526233 53526316 -70549856 + L1Md_A LINE L1 6500 6582 0 9 993 183 162 0 0 chr9 53526319 53526356 -70549816 + A-rich Low_complexity Low_complexity 1 37 0 9 993 442 239 157 17 chr9 53526799 53526910 -70549262 - ID_B1 SINE B4 -15 209 83 9 993 658 270 40 6 chr9 53526910 53527085 -70549087 + MTEa LTR MaLR 1 181 -198 9 993 668 275 0 90 chr9 53527085 53527117 -70549055 + B3A SINE B2 1 31 -167 9 993 2859 142 173 25 chr9 53527117 53527531 -70548641 + RMER6C LTR ERVK 1 495 -195 9 993 297 68 0 0 chr9 53527531 53527575 -70548597 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 9 993 2859 142 173 25 chr9 53527575 53527761 -70548411 + RMER6C LTR ERVK 496 689 -1 9 993 668 275 0 90 chr9 53527761 53527928 -70548244 + B3A SINE B2 32 182 -16 9 993 887 230 23 28 chr9 53527965 53528180 -70547992 + MTEa LTR MaLR 166 379 0 9 993 1387 79 17 0 chr9 53528269 53528447 -70547725 - B2_Mm2 SINE B2 -14 181 1 9 993 25 65 0 0 chr9 53528607 53528653 -70547519 + AT_rich Low_complexity Low_complexity 1 46 0 1 993 725 244 38 47 chr9 53528653 53528864 -70547308 - B3 SINE B2 -7 209 1 1 993 313 312 69 42 chr9 53528898 53529042 -70547130 - L4 LINE RTE -1379 650 503 1 993 24763 10 0 3 chr9 53579416 53582121 -70494051 - IAPEz-int LTR ERVK -2750 3731 1034 1 993 4020 15 35 0 chr9 53582410 53582871 -70493301 - IAPEz-int LTR ERVK -6004 477 1 1 993 1952 102 3 71 chr9 53582872 53583222 -70492950 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 993 1090 200 5 5 chr9 53583222 53583418 -70492754 - B3 SINE B2 -20 196 1 1 993 836 125 39 59 chr9 53583503 53583656 -70492516 + B1_Mur4 SINE Alu 1 150 0 1 993 229 0 54 27 chr9 53583672 53583685 -70492487 + (CAAAA)n Simple_repeat Simple_repeat 3 17 0 1 993 1430 73 5 16 chr9 53583685 53583879 -70492293 + B2_Mm1t SINE B2 2 193 0 1 993 229 0 54 27 chr9 53583879 53583902 -70492270 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 993 251 253 25 25 chr9 53584340 53584421 -70491751 + MIRc SINE MIR 75 155 -113 1 993 25 31 0 0 chr9 53584452 53584484 -70491688 + AT_rich Low_complexity Low_complexity 1 32 0 1 993 289 314 19 19 chr9 53584512 53584619 -70491553 - PB1D10 SINE Alu -10 107 1 1 993 1042 196 244 13 chr9 53584750 53585119 -70491053 + RLTR33 LTR ERVK 175 665 -50 1 993 320 152 98 37 chr9 53585348 53585360 -70490812 - L1_Mur2 LINE L1 -6287 425 416 1 993 3540 115 13 32 chr9 53585360 53585917 -70490255 - Lx4A LINE L1 -14 7044 6499 1 993 320 152 98 37 chr9 53585917 53585986 -70490186 - L1_Mur2 LINE L1 -6297 415 339 1 993 592 50 0 0 chr9 53586015 53586095 -70490077 - B1_Mus2 SINE Alu 0 147 68 1 993 336 330 0 9 chr9 53586343 53586450 -70489722 - PB1D10 SINE Alu -2 115 10 1 993 33 73 0 0 chr9 53586534 53586602 -70489570 + AT_rich Low_complexity Low_complexity 1 68 0 1 993 905 170 14 0 chr9 53586607 53586754 -70489418 - B1_Mur4 SINE Alu -1 149 1 1 993 764 223 16 32 chr9 53586805 53586990 -70489182 - B3A SINE B2 -15 183 2 1 993 359 283 33 40 chr9 53587277 53587428 -70488744 - RLTR19B LTR ERVK 0 715 566 1 993 443 152 0 0 chr9 53587427 53587493 -70488679 - B3 SINE B2 -140 76 11 1 993 246 269 111 37 chr9 53587711 53587819 -70488353 - ORR1E LTR MaLR -167 192 77 1 993 751 183 0 11 chr9 53588161 53588343 -70487829 + CT-rich Low_complexity Low_complexity 1 180 0 1 993 261 290 0 42 chr9 53588344 53588416 -70487756 + polypyrimidine Low_complexity Low_complexity 4 72 0 1 993 262 229 57 0 chr9 53588924 53588994 -70487178 + ORR1D2 LTR MaLR 63 136 -234 1 993 930 170 0 0 chr9 53589335 53589482 -70486690 - B1_Mus1 SINE Alu -1 147 1 1 993 339 262 303 0 chr9 53589511 53589685 -70486487 - B4A SINE B4 -63 229 3 1 993 34 42 0 0 chr9 53589701 53589749 -70486423 + AT_rich Low_complexity Low_complexity 1 48 0 1 993 647 236 59 21 chr9 53589758 53589944 -70486228 - B3A SINE B2 -2 196 4 1 993 289 180 98 0 chr9 53589998 53590059 -70486113 + ID4_ SINE ID 4 70 -13 1 993 656 282 0 13 chr9 53590234 53590385 -70485787 - B3 SINE B2 -45 171 23 1 993 241 349 23 0 chr9 53590845 53590931 -70485241 - RSINE1 SINE B4 -75 90 3 1 993 220 256 35 47 chr9 53591939 53592025 -70484147 + PB1D7 SINE Alu 36 120 0 1 993 1215 48 0 13 chr9 53592081 53592230 -70483942 + B1_Mm SINE Alu 1 147 0 1 993 240 59 0 0 chr9 53592234 53592268 -70483904 + (A)n Simple_repeat Simple_repeat 1 34 0 1 993 590 181 98 41 chr9 53592274 53592458 -70483714 + B3 SINE B2 1 188 -7 1 993 387 0 0 0 chr9 53592996 53593039 -70483133 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 993 228 233 0 0 chr9 53593114 53593157 -70483015 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 993 326 167 47 94 chr9 53593222 53593311 -70482861 + MTEb LTR MaLR 196 280 -99 1 993 255 31 0 0 chr9 53593311 53593343 -70482829 + (C)n Simple_repeat Simple_repeat 1 32 0 1 993 326 167 47 94 chr9 53593343 53593359 -70482813 + MTEb LTR MaLR 281 296 -83 1 993 625 107 0 170 chr9 53593368 53593529 -70482643 - B1_Mus2 SINE Alu 0 147 18 1 993 1014 165 15 6 chr9 53594171 53594513 -70481659 + CT-rich Low_complexity Low_complexity 1 344 0 1 993 2424 283 87 24 chr9 53594520 53595160 -70481012 - RMER1C Other Other 0 1342 659 1 993 2135 144 61 16 chr9 53595160 53595535 -70480637 + ORR1B1 LTR MaLR 3 394 0 1 993 2424 291 73 28 chr9 53595535 53595800 -70480372 - RMER1C Other Other -684 658 208 1 993 230 250 0 0 chr9 53596257 53596305 -70479867 + MTE2a LTR MaLR 5 52 -327 1 993 27 0 0 0 chr9 53597091 53597118 -70479054 + AT_rich Low_complexity Low_complexity 1 27 0 1 993 1554 179 95 14 chr9 53597253 53597599 -70478573 - ORR1D1 LTR MaLR 0 374 1 1 993 352 227 0 0 chr9 53597713 53597788 -70478384 - B3 SINE B2 -12 204 130 1 993 2914 126 69 26 chr9 53597788 53597882 -70478290 - RLTR20B2 LTR ERVK 0 560 465 1 993 279 0 0 0 chr9 53597882 53597913 -70478259 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 993 528 16 0 0 chr9 53597913 53597973 -70478199 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 993 2914 126 69 26 chr9 53597973 53598414 -70477758 - RLTR20B2 LTR ERVK -96 464 4 1 993 430 248 0 153 chr9 53598415 53598476 -70477696 - B3 SINE B2 -83 133 79 1 993 1049 51 65 0 chr9 53598476 53598614 -70477558 + B1_Mm SINE Alu 1 147 0 1 993 430 248 0 153 chr9 53598614 53598709 -70477463 - B3 SINE B2 -138 78 1 1 993 672 256 84 78 chr9 53598824 53599015 -70477157 - B3A SINE B2 -2 193 2 1 993 928 198 68 15 chr9 53599085 53599290 -70476882 + B3 SINE B2 1 216 0 1 993 2295 146 57 41 chr9 53599348 53599735 -70476437 - Lx4A LINE L1 0 7058 6666 1 993 801 211 89 38 chr9 53599839 53600076 -70476096 - RLTR14 LTR ERV1 -133 249 1 1 993 200 111 0 27 chr9 53600670 53600707 -70475465 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 993 831 166 0 14 chr9 53600707 53600854 -70475318 - B1_Mus1 SINE Alu -1 147 3 1 993 1231 48 0 0 chr9 53600920 53601066 -70475106 + B1_Mm SINE Alu 2 147 0 1 993 671 274 65 53 chr9 53601819 53602081 -70474091 + MTEa LTR MaLR 3 267 -112 1 993 2152 82 0 0 chr9 53602081 53602363 -70473809 + L1_Mm LINE L1 5377 5658 -225 1 993 1877 281 46 26 chr9 53602414 53603442 -70472730 - L1MA6 LINE L1 -389 5911 4858 1 993 757 156 14 41 chr9 53603549 53603696 -70472476 + Lx9 LINE L1 5490 5632 -215 1 993 1852 34 0 0 chr9 53603696 53603932 -70472240 + RLTRETN_Mm LTR ERVK 1 236 -86 1 993 5559 22 8 20 chr9 53603932 53604590 -70471582 + MMETn-int LTR ERVK 4195 4844 0 1 993 2884 3 0 21 chr9 53604590 53604919 -70471253 + RLTRETN_Mm LTR ERVK 1 322 0 1 993 1823 242 97 38 chr9 53604927 53605552 -70470620 + Lx9 LINE L1 5669 6324 -1320 1 993 378 0 0 0 chr9 53605552 53605594 -70470578 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 993 1823 242 97 38 chr9 53605594 53605646 -70470526 + Lx9 LINE L1 6325 6385 -1259 1 993 2352 55 115 3 chr9 53607180 53607529 -70468643 + MTB LTR MaLR 3 390 -10 1 993 1031 194 19 34 chr9 53607749 53607957 -70468215 + B3 SINE B2 3 207 -9 1 124 378 0 0 0 chr9 53608412 53608454 -70467718 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 994 639 243 138 36 chr9 53610014 53610210 -70465962 - B3 SINE B2 0 216 1 1 994 423 0 0 0 chr9 53610531 53610578 -70465594 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 994 514 190 60 0 chr9 53610580 53610680 -70465492 - B1_Mur4 SINE Alu -13 137 32 1 994 1539 267 21 41 chr9 53610783 53611294 -70464878 - RMER5 LTR ERV1 -21 513 13 1 994 274 269 142 42 chr9 53611288 53611408 -70464764 - RMER15 LTR ERVL -153 422 291 1 994 2653 136 104 15 chr9 53611554 53612033 -70464139 + RLTR28 LTR ERVL 3 524 0 1 994 686 201 7 29 chr9 53612062 53612200 -70463972 + B1_Mur3 SINE Alu 2 136 -13 1 994 336 24 0 0 chr9 53612203 53612244 -70463928 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1 994 242 171 0 0 chr9 53612255 53612296 -70463876 + B1F SINE Alu 103 143 -6 1 994 373 305 52 42 chr9 53612467 53612799 -70463373 + MLT1G3 LTR MaLR 200 585 -10 1 994 311 214 68 0 chr9 53613378 53613482 -70462690 - B1F1 SINE Alu -6 143 1 1 994 194 128 26 0 chr9 53613485 53613524 -70462648 + T-rich Low_complexity Low_complexity 4 43 0 1 994 294 376 9 0 chr9 53613527 53613636 -70462536 - PB1 SINE Alu -7 120 11 1 994 391 320 31 50 chr9 53613825 53613986 -70462186 - MLT1D LTR MaLR -7 498 341 1 994 383 317 75 27 chr9 53614084 53614272 -70461900 - MLT1D LTR MaLR -308 197 1 1 994 205 182 0 0 chr9 53614313 53614346 -70461826 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 1 994 1266 105 11 5 chr9 53614354 53614548 -70461624 - B2_Mm2 SINE B2 -13 203 1 1 994 677 222 190 17 chr9 53614568 53614747 -70461425 - B3 SINE B2 -6 210 1 1 994 366 148 0 16 chr9 53614764 53614826 -70461346 - B1_Mur2 SINE Alu 0 149 89 1 994 1293 21 0 0 chr9 53614844 53614989 -70461183 - B1_Mm SINE Alu 0 147 3 1 994 2312 85 27 59 chr9 53615017 53615355 -70460817 + ORR1A2 LTR MaLR 1 327 0 1 994 422 293 15 22 chr9 53615405 53615541 -70460631 - B1F SINE Alu -10 139 5 1 994 548 303 28 0 chr9 53615549 53615691 -70460481 - ID_B1 SINE B4 0 224 79 1 994 2738 89 34 58 chr9 53616006 53616422 -70459750 + MTB_Mm LTR MaLR 2 407 0 1 994 340 244 96 48 chr9 53616518 53616635 -70459537 - MER92B LTR ERV1 -232 404 282 1 994 398 266 73 9 chr9 53616635 53616745 -70459427 + PB1D10 SINE Alu 1 117 0 1 994 821 127 40 53 chr9 53616754 53616904 -70459268 + B1_Mur4 SINE Alu 1 148 -2 1 994 587 182 97 24 chr9 53617180 53617304 -70458868 - B1_Mur4 SINE Alu -5 145 13 1 994 574 251 90 25 chr9 53617366 53617566 -70458606 - ID_B1 SINE B4 -11 213 1 1 994 374 288 12 0 chr9 53617721 53617801 -70458371 - ID4_ SINE ID -2 81 1 1 994 388 118 0 29 chr9 53617801 53617850 -70458322 + B1_Mur4 SINE Alu 104 150 0 1 994 198 91 0 0 chr9 53617851 53617884 -70458288 + (A)n Simple_repeat Simple_repeat 1 33 0 2 994 526 217 20 24 chr9 53617918 53618045 -70458127 + B1F SINE Alu 24 149 0 2 994 297 287 168 24 chr9 53618174 53618299 -70457873 - RSINE1 SINE B4 -8 157 15 2 994 519 240 71 16 chr9 53618324 53618451 -70457721 - B1F SINE Alu -6 143 10 2 994 489 275 0 7 chr9 53619079 53619222 -70456950 + B1F SINE Alu 4 145 -4 2 994 364 290 152 45 chr9 53620373 53620550 -70455622 - MIR SINE MIR 0 262 67 2 994 300 27 0 0 chr9 53620968 53621005 -70455167 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 994 720 248 6 37 chr9 53621011 53621174 -70454998 + RSINE1 SINE B4 8 165 0 2 994 230 269 126 126 chr9 53621174 53621202 -70454970 + B3A SINE B2 7 197 -1 2 994 281 289 0 26 chr9 53622111 53622189 -70453983 - ID_B1 SINE B4 -16 208 133 2 994 342 212 119 92 chr9 53622461 53622570 -70453602 + PB1D9 SINE Alu 1 112 -8 2 994 219 139 0 0 chr9 53622741 53622777 -70453395 + (GGA)n Simple_repeat Simple_repeat 2 37 0 2 994 610 53 36 2 chr9 53623098 53623199 -70452973 - B1_Mus2 SINE Alu 0 149 47 2 994 258 248 94 47 chr9 53623130 53623236 -70452936 - MT2B LTR ERVL -337 264 154 2 994 977 245 5 0 chr9 53624028 53624220 -70451952 - B3 SINE B2 -21 195 3 2 994 274 267 227 71 chr9 53624428 53624569 -70451603 - MER20 DNA MER1_type -22 197 35 2 994 543 101 0 0 chr9 53625684 53625763 -70450409 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 2 994 1023 123 129 0 chr9 53625767 53625937 -70450235 - B2_Mm2 SINE B2 -1 194 3 2 994 1591 22 38 0 chr9 53625958 53626143 -70450029 - B2_Mm1a SINE B2 0 193 2 2 994 813 278 123 37 chr9 53626143 53626312 -70449860 - MLT1A0 LTR MaLR -61 304 113 2 994 1764 217 70 22 chr9 53626312 53626712 -70449460 - MTD LTR MaLR 0 419 1 2 994 813 278 123 37 chr9 53626712 53626811 -70449361 - MLT1A0 LTR MaLR -253 112 13 2 994 245 240 82 20 chr9 53626990 53627088 -70449084 - L1MB4 LINE L1 -56 6124 6021 2 994 437 28 56 0 chr9 53627158 53627229 -70448943 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2 994 231 36 0 0 chr9 53627229 53627256 -70448916 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 994 623 268 31 0 chr9 53627274 53627401 -70448771 - RSINE1 SINE B4 -33 132 2 2 994 390 179 0 0 chr9 53627574 53627629 -70448543 + polypyrimidine Low_complexity Low_complexity 26 80 0 2 994 1137 84 6 16 chr9 53627629 53627811 -70448361 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 994 390 179 0 0 chr9 53627811 53627833 -70448339 + polypyrimidine Low_complexity Low_complexity 4 25 0 2 994 1241 54 0 0 chr9 53627834 53627981 -70448191 - B1_Mm SINE Alu 0 147 1 2 994 319 291 104 19 chr9 53628316 53628470 -70447702 - Lx8 LINE L1 -7 7466 7300 2 994 3611 243 38 25 chr9 53628467 53629386 -70446786 - Lx8 LINE L1 -326 7147 6217 2 994 430 251 98 108 chr9 53629569 53629783 -70446389 + ID_B1 SINE B4 5 216 -8 2 994 326 23 23 0 chr9 53629808 53629851 -70446321 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 2 994 292 271 70 12 chr9 53629902 53629988 -70446184 - Tigger15a DNA TcMar -10 705 615 2 994 301 355 47 24 chr9 53630049 53630176 -70445996 + L4 LINE RTE 793 922 -1107 2 994 781 226 7 7 chr9 53630225 53630372 -70445800 + B1F1 SINE Alu 1 147 -2 2 994 1288 20 0 13 chr9 53630418 53630568 -70445604 + B1_Mus1 SINE Alu 1 148 0 2 994 229 37 0 0 chr9 53630596 53630623 -70445549 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 994 335 154 15 0 chr9 53630623 53630688 -70445484 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 994 540 332 51 92 chr9 53630697 53630989 -70445183 - B4A SINE B4 0 292 13 2 994 936 160 0 20 chr9 53631348 53631501 -70444671 - B1_Mur4 SINE Alu 0 150 1 2 994 253 211 27 40 chr9 53631503 53631577 -70444595 - PB1D10 SINE Alu 0 117 45 2 994 334 246 0 0 chr9 53632145 53632210 -70443962 - ID4_ SINE ID -10 73 9 2 994 237 318 41 96 chr9 53632239 53632385 -70443787 - MIR SINE MIR -117 145 8 2 994 288 0 0 0 chr9 53632412 53632444 -70443728 + (CAAG)n Simple_repeat Simple_repeat 2 33 0 2 994 550 135 17 35 chr9 53632606 53632721 -70443451 - RMER1B Other Other -1 1065 953 2 994 357 91 0 0 chr9 53632723 53632767 -70443405 - RMER1A Other Other -179 851 808 2 994 1040 117 76 0 chr9 53632767 53632938 -70443234 - B2_Mm2 SINE B2 -11 184 1 2 994 1836 133 7 0 chr9 53632938 53633209 -70442963 - RMER1B Other Other -188 878 606 2 994 862 93 0 48 chr9 53633209 53633333 -70442839 - B1_Mus1 SINE Alu -29 119 2 2 994 420 214 47 118 chr9 53633221 53633348 -70442824 - B4 SINE B4 -95 197 80 2 994 418 247 23 120 chr9 53633224 53633399 -70442773 - MT2B LTR ERVL -343 258 101 2 994 202 115 48 32 chr9 53633500 53633563 -70442609 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 994 340 273 0 13 chr9 53633635 53633713 -70442459 - B1_Mur1 SINE Alu -5 144 68 2 994 290 286 60 70 chr9 53633717 53633770 -70442402 - B3A SINE B2 0 198 146 2 994 342 0 0 0 chr9 53633770 53633808 -70442364 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 994 290 286 60 70 chr9 53633808 53633953 -70442219 - B3A SINE B2 -53 145 4 2 994 825 114 18 33 chr9 53634002 53634275 -70441897 + (TG)n Simple_repeat Simple_repeat 1 268 0 2 994 204 349 80 27 chr9 53635389 53635501 -70440671 + MIRb SINE MIR 120 237 -31 2 994 208 296 54 43 chr9 53635601 53635618 -70440554 + MIR SINE MIR 103 119 -143 2 994 207 0 0 0 chr9 53635618 53635641 -70440531 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 994 1170 36 0 14 chr9 53635641 53635780 -70440392 - B1_Mm SINE Alu -10 137 1 2 994 208 296 54 43 chr9 53635780 53635853 -70440319 + MIR SINE MIR 120 194 -68 2 994 297 0 0 0 chr9 53636001 53636034 -70440138 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 994 309 109 0 0 chr9 53636034 53636080 -70440092 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 994 383 234 131 0 chr9 53636089 53636196 -70439976 - RSINE1 SINE B4 -43 122 2 2 994 290 250 62 0 chr9 53636831 53636895 -70439277 - B1_Mur3 SINE Alu -80 69 2 2 994 737 228 67 46 chr9 53636959 53637258 -70438914 - MLT1D LTR MaLR -38 467 116 2 994 211 0 88 0 chr9 53637259 53637293 -70438879 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 994 818 175 15 0 chr9 53637293 53637430 -70438742 - B1_Mur4 SINE Alu -11 139 1 2 994 263 276 171 11 chr9 53637562 53637650 -70438522 + B1F1 SINE Alu 9 110 -39 2 994 486 272 51 86 chr9 53637901 53638098 -70438074 - B3 SINE B2 0 216 27 2 994 1069 121 0 0 chr9 53638138 53638287 -70437885 - B1_Mur4 SINE Alu 0 150 2 2 994 591 287 85 11 chr9 53638325 53638501 -70437671 - B4 SINE B4 -60 232 44 2 994 396 306 48 20 chr9 53638784 53638931 -70437241 + B4A SINE B4 1 151 -141 2 994 1335 243 88 23 chr9 53639811 53640029 -70436143 - MTEb LTR MaLR 0 379 133 2 994 3225 65 2 0 chr9 53640029 53640428 -70435744 - MTB LTR MaLR 0 400 1 2 994 1335 243 88 23 chr9 53640428 53640563 -70435609 - MTEb LTR MaLR -247 132 3 2 994 847 282 67 52 chr9 53641687 53641956 -70434216 + Lx8 LINE L1 6995 7267 -206 2 994 293 82 20 0 chr9 53641987 53642036 -70434136 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 994 438 75 0 0 chr9 53642768 53642835 -70433337 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 994 524 291 54 41 chr9 53643373 53643520 -70432652 + RSINE1 SINE B4 7 155 -10 2 994 218 370 116 43 chr9 53643378 53643542 -70432630 + B3 SINE B2 11 186 -30 2 994 1168 68 0 7 chr9 53643807 53643955 -70432217 + B1_Mus1 SINE Alu 2 148 0 2 994 550 168 176 0 chr9 53643982 53644101 -70432071 + B1_Mur2 SINE Alu 1 140 -9 2 994 467 182 39 29 chr9 53644360 53644462 -70431710 - B1F SINE Alu -6 143 41 2 994 234 283 71 61 chr9 53644379 53644477 -70431695 - MT2B2 LTR ERVL -306 278 180 2 994 732 194 6 59 chr9 53644488 53644658 -70431514 - RSINE1 SINE B4 0 165 5 2 994 21 0 0 0 chr9 53644671 53644692 -70431480 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 638 289 73 24 chr9 53644960 53645166 -70431006 + ID_B1 SINE B4 1 216 -8 2 994 544 271 102 83 chr9 53645183 53645471 -70430701 + B4A SINE B4 14 292 0 2 994 395 185 11 0 chr9 53645893 53645985 -70430187 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 994 198 103 0 0 chr9 53646098 53646127 -70430045 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 2 994 253 323 20 40 chr9 53646281 53646381 -70429791 - PB1D7 SINE Alu -7 113 16 2 994 303 259 122 23 chr9 53646533 53646637 -70429535 - PB1D10 SINE Alu -7 120 1 2 994 1852 128 7 0 chr9 53646947 53647221 -70428951 + RLTR30 LTR ERV1 1 276 -103 2 994 231 97 0 0 chr9 53647265 53647296 -70428876 - U2 snRNA snRNA -157 31 1 2 994 323 183 56 0 chr9 53647318 53647389 -70428783 - MTE2a LTR MaLR -13 366 292 2 994 181 185 0 53 chr9 53647395 53647452 -70428720 + C-rich Low_complexity Low_complexity 6 59 0 2 994 475 195 54 0 chr9 53647474 53647623 -70428549 + CT-rich Low_complexity Low_complexity 4 160 0 2 994 256 245 19 0 chr9 53647627 53647680 -70428492 + polypyrimidine Low_complexity Low_complexity 2 55 0 2 994 450 306 0 31 chr9 53647693 53647821 -70428351 - B1_Mur1 SINE Alu -21 128 5 2 994 1243 41 0 0 chr9 53647847 53647993 -70428179 - B1_Mus2 SINE Alu 0 147 2 2 994 816 224 102 0 chr9 53648366 53648562 -70427610 - ID_B1 SINE B4 -6 218 3 2 994 535 231 82 27 chr9 53649437 53649584 -70426588 - RSINE1 SINE B4 -8 157 3 2 994 1330 76 48 11 chr9 53649652 53649839 -70426333 - B2_Mm2 SINE B2 -1 194 1 3 994 408 298 46 78 chr9 53650036 53650189 -70425983 - B1F SINE Alu -1 148 1 3 994 615 52 0 0 chr9 53650210 53650299 -70425873 + B1_Mm SINE Alu 61 149 -1 3 994 899 275 44 15 chr9 53650328 53650531 -70425641 - ID_B1 SINE B4 -7 217 9 3 994 26 0 0 0 chr9 53650553 53650579 -70425593 + AT_rich Low_complexity Low_complexity 1 26 0 3 994 186 43 0 0 chr9 53650585 53650608 -70425564 + (TGG)n Simple_repeat Simple_repeat 1 23 0 3 994 732 266 64 0 chr9 53650623 53650811 -70425361 - B3 SINE B2 -15 201 2 3 994 510 230 132 44 chr9 53650811 53650830 -70425342 - B3 SINE B2 -15 201 183 3 994 417 86 0 0 chr9 53650830 53650888 -70425284 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 994 510 230 132 44 chr9 53650888 53651050 -70425122 - B3 SINE B2 -34 182 6 3 994 8526 34 1 0 chr9 53651855 53653131 -70423041 - L1Md_T LINE L1 0 6582 5306 3 994 190 292 90 0 chr9 53653434 53653523 -70422649 + L2c LINE L2 3247 3343 -44 3 994 784 222 195 0 chr9 53653759 53653944 -70422228 - ID_B1 SINE B4 -1 223 3 3 994 195 42 0 0 chr9 53653948 53653972 -70422200 + (T)n Simple_repeat Simple_repeat 1 24 0 3 994 1289 70 29 17 chr9 53653994 53654169 -70422003 - B2_Mm2 SINE B2 -18 177 1 3 994 262 179 42 10 chr9 53654948 53655044 -70421128 + CT-rich Low_complexity Low_complexity 2 100 0 3 994 275 0 29 0 chr9 53655084 53655119 -70421053 + (CCCCCA)n Simple_repeat Simple_repeat 6 41 0 3 994 589 165 16 0 chr9 53655243 53655364 -70420808 + CT-rich Low_complexity Low_complexity 3 125 0 3 994 183 80 0 0 chr9 53655374 53655399 -70420773 + (T)n Simple_repeat Simple_repeat 1 25 0 3 994 433 310 46 60 chr9 53656125 53656276 -70419896 + RSINE1 SINE B4 3 151 -14 3 994 1078 71 7 0 chr9 53656302 53656443 -70419729 - B1_Mus1 SINE Alu 0 148 7 3 994 254 296 0 0 chr9 53656341 53656466 -70419706 - ORR1B1-int LTR MaLR -755 754 630 3 994 896 254 14 18 chr9 53656474 53656691 -70419481 + B3 SINE B2 1 216 0 3 994 1372 95 11 0 chr9 53656776 53656966 -70419206 + B2_Mm1t SINE B2 1 192 -1 3 994 424 197 178 54 chr9 53657015 53657144 -70419028 - B1F SINE Alu -1 148 4 3 994 351 0 0 0 chr9 53657169 53657208 -70418964 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 994 724 221 7 7 chr9 53657212 53657353 -70418819 - B1_Mur4 SINE Alu -7 143 3 3 994 366 218 39 0 chr9 53658897 53658975 -70417197 - ID_B1 SINE B4 -5 219 139 3 994 886 140 0 65 chr9 53659082 53659235 -70416937 - B1_Mur3 SINE Alu -6 143 1 3 994 295 360 8 8 chr9 53659655 53659781 -70416391 - B1_Mus2 SINE Alu -21 126 1 3 994 432 322 12 7 chr9 53659781 53659808 -70416364 - ID SINE ID -208 84 63 3 994 496 239 42 0 chr9 53660102 53660244 -70415928 - Lx9 LINE L1 0 7644 7497 3 994 524 225 350 0 chr9 53660546 53660706 -70415466 - B3 SINE B2 0 216 1 3 994 473 261 56 50 chr9 53660837 53660998 -70415174 - RSINE1 SINE B4 -2 163 2 3 994 346 243 0 0 chr9 53661403 53661477 -70414695 - L5 LINE RTE -14 2251 2178 3 994 186 43 0 0 chr9 53661506 53661529 -70414643 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 994 450 299 60 13 chr9 53661585 53661734 -70414438 - B4A SINE B4 -136 156 1 3 994 499 269 0 48 chr9 53662198 53662323 -70413849 + PB1 SINE Alu 1 119 -8 3 994 210 208 0 0 chr9 53662522 53662570 -70413602 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 994 701 230 62 27 chr9 53662570 53662777 -70413395 - B3A SINE B2 -13 203 5 3 994 288 336 0 17 chr9 53662792 53662910 -70413262 - PB1D10 SINE Alu -1 116 1 3 994 228 266 58 20 chr9 53662971 53663013 -70413159 + B1F SINE Alu 40 130 -19 3 994 253 241 35 0 chr9 53663013 53663071 -70413101 + ID_B1 SINE B4 157 216 -8 3 994 189 0 0 0 chr9 53663175 53663196 -70412976 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 994 1279 27 0 0 chr9 53663203 53663350 -70412822 + B1_Mus2 SINE Alu 1 147 0 3 994 189 0 0 0 chr9 53663354 53663375 -70412797 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 994 543 219 350 0 chr9 53663556 53663716 -70412456 + B3 SINE B2 1 216 0 3 994 908 263 63 0 chr9 53664186 53664391 -70411781 + ID_B1 SINE B4 7 224 0 3 994 306 0 0 0 chr9 53665980 53666014 -70410158 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 3 994 308 148 16 0 chr9 53666072 53666133 -70410039 + (TATG)n Simple_repeat Simple_repeat 2 63 0 3 994 275 318 85 13 chr9 53666140 53666293 -70409879 - RSINE1 SINE B4 0 165 2 3 994 559 216 20 0 chr9 53666295 53666397 -70409775 - PB1D10 SINE Alu -7 110 7 3 994 277 324 27 0 chr9 53666342 53666416 -70409756 - B4A SINE B4 -146 146 71 3 994 1270 34 0 0 chr9 53667028 53667175 -70408997 - B1_Mm SINE Alu 0 147 1 3 994 21 0 0 0 chr9 53667185 53667206 -70408966 + AT_rich Low_complexity Low_complexity 1 21 0 3 994 341 145 114 14 chr9 53667312 53667382 -70408790 - B4A SINE B4 -15 277 201 3 994 260 118 14 42 chr9 53667382 53667453 -70408719 + C-rich Low_complexity Low_complexity 3 71 0 3 994 347 318 120 25 chr9 53667468 53667626 -70408546 - B4 SINE B4 -117 175 3 3 994 458 204 18 18 chr9 53667634 53667744 -70408428 - PB1D9 SINE Alu 0 120 11 3 994 1083 56 0 18 chr9 53668896 53669059 -70407113 + (TCTA)n Simple_repeat Simple_repeat 1 160 0 3 994 912 175 83 36 chr9 53669059 53669467 -70406705 - MT2B LTR ERVL -7 468 1 3 994 848 260 151 14 chr9 53669782 53670067 -70406105 + MLT1A0 LTR MaLR 42 365 0 3 994 341 284 0 38 chr9 53670708 53670814 -70405358 + PB1D10 SINE Alu 3 104 -13 3 994 1264 217 112 12 chr9 53670816 53671138 -70405034 - MTE2b LTR MaLR -7 372 19 3 994 21 0 0 0 chr9 53671151 53671172 -70405000 + AT_rich Low_complexity Low_complexity 1 21 0 3 994 771 245 67 15 chr9 53671214 53671409 -70404763 - ID_B1 SINE B4 -18 206 2 3 994 200 232 170 50 chr9 53671440 53671540 -70404632 - MIRb SINE MIR -34 234 123 3 994 278 302 55 60 chr9 53671673 53671874 -70404298 - MLT1I LTR MaLR -176 235 36 3 994 435 68 0 0 chr9 53672116 53672175 -70403997 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 994 799 147 22 0 chr9 53672180 53672316 -70403856 + B1_Mur4 SINE Alu 1 139 -11 3 994 319 284 0 0 chr9 53672384 53672458 -70403714 + ID4 SINE ID 3 76 -7 3 994 659 265 98 26 chr9 53672679 53672943 -70403229 + B4A SINE B4 1 283 -9 3 994 224 250 0 18 chr9 53672957 53673014 -70403158 + (CATA)n Simple_repeat Simple_repeat 1 56 0 3 994 378 205 96 0 chr9 53673935 53674018 -70402154 - PB1D10 SINE Alu -16 101 11 3 994 21 0 0 0 chr9 53674065 53674086 -70402086 + AT_rich Low_complexity Low_complexity 1 21 0 3 994 570 29 0 0 chr9 53674709 53674777 -70401395 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 3 994 291 265 0 56 chr9 53674951 53675023 -70401149 + ID4 SINE ID 3 70 -13 3 994 279 0 0 0 chr9 53675023 53675054 -70401118 + (CAA)n Simple_repeat Simple_repeat 2 32 0 3 994 510 17 0 0 chr9 53675151 53675210 -70400962 + (TCC)n Simple_repeat Simple_repeat 3 61 0 3 994 1351 78 17 0 chr9 53675210 53675389 -70400783 - B2_Mm1a SINE B2 -10 183 2 3 994 295 236 95 27 chr9 53675648 53675722 -70400450 + ID4 SINE ID 1 79 -4 3 994 464 274 67 6 chr9 53675867 53676032 -70400140 + L1ME2z LINE L1 5709 5883 -561 3 994 281 325 0 17 chr9 53676707 53676823 -70399349 + MLT1D LTR MaLR 387 500 -5 3 994 230 254 36 0 chr9 53676937 53676992 -70399180 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 3 994 1367 78 28 11 chr9 53678004 53678186 -70397986 - B2_Mm2 SINE B2 -9 186 2 3 994 21 57 0 0 chr9 53678194 53678229 -70397943 + AT_rich Low_complexity Low_complexity 1 35 0 3 994 264 187 82 31 chr9 53678392 53678487 -70397685 - RMER6A LTR ERVK 0 756 586 3 994 1148 82 7 0 chr9 53678690 53678836 -70397336 + B1_Mus1 SINE Alu 2 148 0 3 994 807 211 0 0 chr9 53678895 53679037 -70397135 + B1_Mur3 SINE Alu 2 143 -6 3 994 236 359 8 17 chr9 53679075 53679194 -70396978 - L1MC LINE L1 -2000 5882 5765 3 994 512 266 40 16 chr9 53679206 53679332 -70396840 + RSINE1 SINE B4 2 130 -35 3 994 219 69 0 0 chr9 53680749 53680778 -70395394 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3 994 2844 125 19 32 chr9 53680841 53681304 -70394868 + RMER6B LTR ERVK 3 459 -2 3 994 453 305 0 0 chr9 53681479 53681584 -70394588 - PB1D9 SINE Alu -13 107 3 3 994 1248 34 0 7 chr9 53681603 53681751 -70394421 - B1_Mm SINE Alu 0 147 1 3 994 335 319 75 9 chr9 53681945 53682157 -70394015 - L1M5 LINE L1 -618 5506 5281 3 994 1268 22 0 43 chr9 53682226 53682414 -70393758 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 994 262 200 33 16 chr9 53682486 53682547 -70393625 - ID4_ SINE ID -20 63 2 3 994 219 36 0 0 chr9 53683293 53683321 -70392851 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 3 994 294 100 33 16 chr9 53683380 53683441 -70392731 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 994 351 0 0 0 chr9 53683459 53683498 -70392674 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 994 459 117 19 10 chr9 53683498 53683602 -70392570 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 994 585 76 0 0 chr9 53684431 53684510 -70391662 + (GGAGA)n Simple_repeat Simple_repeat 2 80 0 4 994 27 0 0 0 chr9 53684587 53684614 -70391558 + AT_rich Low_complexity Low_complexity 1 27 0 4 994 608 191 74 7 chr9 53684615 53684763 -70391409 - Lx4A LINE L1 -2 7056 6899 4 994 405 0 0 0 chr9 53685819 53685864 -70390308 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 994 324 320 21 0 chr9 53685868 53685965 -70390207 - Lx7 LINE L1 -393 7303 7205 4 994 219 167 0 0 chr9 53686022 53686064 -70390108 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 4 994 726 229 31 15 chr9 53686077 53686272 -70389900 - Lx6 LINE L1 -176 7284 7087 4 994 180 156 0 0 chr9 53686444 53686470 -70389702 + T-rich Low_complexity Low_complexity 20 45 0 4 994 468 227 140 14 chr9 53686470 53686613 -70389559 - RSINE1 SINE B4 -2 163 3 4 994 180 156 0 0 chr9 53686613 53686631 -70389541 + T-rich Low_complexity Low_complexity 2 19 0 4 994 223 273 51 13 chr9 53686732 53686810 -70389362 + B3 SINE B2 5 85 -131 4 994 421 278 61 20 chr9 53686827 53686974 -70389198 + B3A SINE B2 44 196 -2 4 994 212 185 36 18 chr9 53687170 53687225 -70388947 - MIR3 SINE MIR -18 190 135 4 994 6397 173 26 76 chr9 53687450 53687506 -70388666 + L1_Mur3 LINE L1 4474 4529 -1351 4 994 829 26 0 17 chr9 53687506 53687623 -70388549 + L1Md_F3 LINE L1 6456 6570 -14 4 994 6397 173 26 76 chr9 53687623 53688974 -70387198 + L1_Mur3 LINE L1 4530 5811 -69 4 994 673 225 42 17 chr9 53690064 53690244 -70385928 + B3A SINE B2 2 186 -9 4 994 687 175 357 0 chr9 53690248 53690402 -70385770 + B3 SINE B2 1 209 -7 4 994 1084 75 29 0 chr9 53691029 53691202 -70384970 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 994 463 324 7 0 chr9 53691202 53691341 -70384831 - ID_B1 SINE B4 -4 220 81 4 994 248 301 70 17 chr9 53692083 53692198 -70383974 - LTR88b LTR Gypsy? -79 758 638 4 994 594 0 0 0 chr9 53692300 53692366 -70383806 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 994 413 302 25 0 chr9 53692536 53692655 -70383517 - B1F1 SINE Alu -27 122 1 4 994 216 233 0 48 chr9 53692660 53692698 -70383474 + T-rich Low_complexity Low_complexity 23 60 0 4 994 1181 54 7 0 chr9 53692698 53692845 -70383327 - B1_Mus1 SINE Alu 0 148 1 4 994 216 233 0 48 chr9 53692845 53692869 -70383303 + T-rich Low_complexity Low_complexity 1 22 0 4 994 333 220 88 0 chr9 53692874 53692965 -70383207 - L1MA7 LINE L1 0 6291 6193 4 994 327 206 294 0 chr9 53692965 53693057 -70383115 - B1_Mus2 SINE Alu -28 119 1 4 994 288 196 196 47 chr9 53693057 53693072 -70383100 - MT2B LTR ERVL -324 277 155 4 994 375 290 12 141 chr9 53693101 53693342 -70382830 + MTEa LTR MaLR 1 210 -169 4 994 671 177 7 51 chr9 53693669 53693806 -70382366 - B1_Mur1 SINE Alu 0 149 19 4 994 556 183 16 59 chr9 53693947 53694133 -70382039 + C-rich Low_complexity Low_complexity 3 180 0 4 994 299 150 17 0 chr9 53694135 53694195 -70381977 + CT-rich Low_complexity Low_complexity 3 63 0 4 994 180 0 0 0 chr9 53694445 53694465 -70381707 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 994 1130 256 127 0 chr9 53694477 53694809 -70381363 - MTEa LTR MaLR -5 374 1 4 994 526 273 28 14 chr9 53695092 53695233 -70380939 - RSINE1 SINE B4 -21 144 2 4 994 181 338 24 24 chr9 53695257 53695339 -70380833 - MIRc SINE MIR -185 83 2 4 994 30 27 0 0 chr9 53696168 53696205 -70379967 + AT_rich Low_complexity Low_complexity 1 37 0 4 994 508 185 43 0 chr9 53696238 53696330 -70379842 - RSINE1 SINE B4 -49 116 21 4 994 649 255 68 44 chr9 53697082 53697287 -70378885 + B3 SINE B2 2 211 -5 4 994 331 301 79 68 chr9 53698795 53699148 -70377024 - L1ME3A LINE L1 -71 6102 5746 4 994 513 282 8 0 chr9 53699403 53699520 -70376652 + RSINE1 SINE B4 32 149 -16 4 994 1954 174 12 0 chr9 53700592 53700932 -70375240 - ORR1B1 LTR MaLR -50 344 1 4 994 470 236 9 0 chr9 53700992 53701098 -70375074 - MLT1B LTR MaLR -264 126 20 4 994 291 326 60 8 chr9 53701953 53702086 -70374086 - Charlie16a DNA MER1_type 0 342 203 4 994 733 317 13 76 chr9 53702105 53702409 -70373763 + B4 SINE B4 2 286 -6 4 994 221 341 61 23 chr9 53704243 53704375 -70371797 - L2a LINE L2 0 3426 3290 4 994 650 291 103 64 chr9 53704993 53705382 -70370790 - MT2A LTR ERVL -3 530 127 4 994 224 225 0 0 chr9 53705571 53705611 -70370561 + (CAT)n Simple_repeat Simple_repeat 3 42 0 4 994 331 215 15 0 chr9 53706574 53706639 -70369533 - PB1D10 SINE Alu -26 91 26 4 994 243 242 237 21 chr9 53706684 53706781 -70369391 - PB1 SINE Alu -7 120 3 4 994 10766 57 1 7 chr9 53707166 53709242 -70366930 - L1Md_F2 LINE L1 -3 6579 4520 4 994 14972 75 106 2 chr9 53709266 53711536 -70364636 - L1Md_F2 LINE L1 -2303 3580 1065 4 994 7481 62 8 7 chr9 53711536 53712493 -70363679 + RLTR13A2 LTR ERVK 1 958 0 4 994 5337 105 66 10 chr9 53712493 53713139 -70363033 - L1Md_F2 LINE L1 -5552 1064 391 4 994 815 134 0 0 chr9 53713169 53713296 -70362876 - MT2_Mm LTR ERVL -78 415 289 4 994 564 271 15 0 chr9 53714108 53714241 -70361931 + B4 SINE B4 1 135 -157 4 994 3094 58 12 30 chr9 53714492 53714899 -70361273 + MTB LTR MaLR 1 400 0 4 994 366 250 0 0 chr9 53715875 53715955 -70360217 + B4A SINE B4 205 284 -8 4 994 217 51 51 0 chr9 53716009 53716048 -70360124 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 994 3687 187 51 25 chr9 53716474 53717236 -70358936 - Lx2B LINE L1 -1 6999 6218 4 994 225 0 0 0 chr9 53717461 53717486 -70358686 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 994 266 288 0 0 chr9 53717693 53717759 -70358413 + ID_B1 SINE B4 104 169 -55 4 994 1423 60 22 0 chr9 53717789 53717971 -70358201 + B2_Mm1t SINE B2 2 187 -6 4 994 180 125 0 0 chr9 53718036 53718068 -70358104 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 994 243 0 0 0 chr9 53718924 53718951 -70357221 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 994 813 209 6 22 chr9 53719005 53719186 -70356986 + B3A SINE B2 2 179 -19 4 994 235 227 64 39 chr9 53719186 53719258 -70356914 - RLTR25B LTR ERVK -513 515 442 4 994 530 161 0 11 chr9 53719204 53719298 -70356874 - B1_Mus1 SINE Alu -55 93 1 4 994 431 214 50 10 chr9 53719486 53719585 -70356587 - B3A SINE B2 -82 116 14 4 994 540 162 9 37 chr9 53719608 53719717 -70356455 - B1F2 SINE Alu -1 148 43 4 994 314 288 64 89 chr9 53719988 53720109 -70356063 - RMER5 LTR ERV1 -15 519 403 4 994 215 61 0 29 chr9 53720109 53720143 -70356029 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 994 1023 224 5 0 chr9 53720143 53720344 -70355828 - B3 SINE B2 -13 203 2 4 994 314 288 64 89 chr9 53720344 53720423 -70355749 - RMER5 LTR ERV1 -132 402 324 4 994 1031 257 17 78 chr9 53720422 53720557 -70355615 + B4A SINE B4 6 132 -160 4 994 552 56 0 0 chr9 53720557 53720629 -70355543 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 994 1031 257 17 78 chr9 53720629 53720788 -70355384 + B4A SINE B4 133 282 -10 4 994 252 0 0 0 chr9 53720917 53720945 -70355227 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 994 423 271 9 0 chr9 53720945 53721052 -70355120 - PB1D10 SINE Alu -9 108 1 4 994 282 299 141 13 chr9 53721356 53721505 -70354667 + MIRb SINE MIR 2 169 -99 4 994 213 39 0 0 chr9 53721700 53721726 -70354446 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 994 252 0 0 0 chr9 53721766 53721794 -70354378 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 4 994 295 238 37 24 chr9 53721822 53721904 -70354268 - L1MD2 LINE L1 -5658 889 807 4 994 516 244 57 8 chr9 53722499 53722623 -70353549 - RSINE1 SINE B4 0 165 36 4 994 486 96 0 0 chr9 53722896 53722969 -70353203 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 994 399 284 0 57 chr9 53723049 53723172 -70353000 + RMER2 LTR ERV1 1 116 -451 4 994 550 254 66 89 chr9 53723229 53723488 -70352684 + RMER2 LTR ERV1 288 540 -27 4 994 276 245 87 48 chr9 53723629 53723732 -70352440 + MTEa LTR MaLR 1 107 -272 4 994 348 294 29 0 chr9 53723781 53723883 -70352289 - MTE-int LTR MaLR -346 1234 1130 4 994 1078 266 169 32 chr9 53723884 53724381 -70351791 + RMER2 LTR ERV1 2 566 -1 4 994 712 260 120 40 chr9 53725309 53725609 -70350563 + MuRRS4-int LTR ERV1 1041 1364 -3699 4 994 8020 42 16 4 chr9 53725613 53726659 -70349513 - L1Md_F2 LINE L1 -12 6570 5513 4 994 1890 31 5 0 chr9 53726758 53726981 -70349191 + L1_Mus1 LINE L1 6343 6566 -1 4 994 682 295 108 79 chr9 53727209 53727845 -70348327 + RLTR6-int LTR ERV1 3076 3878 -3900 4 994 255 281 167 0 chr9 53728163 53728277 -70347895 + MuRRS4-int LTR ERV1 2563 2695 -2622 4 994 265 325 0 0 chr9 53728245 53728325 -70347847 + RLTR6-int LTR ERV1 4211 4290 -3162 4 994 198 0 0 0 chr9 53728460 53728482 -70347690 + (A)n Simple_repeat Simple_repeat 1 22 0 4 994 3209 69 5 2 chr9 53728778 53729198 -70346974 - BGLII LTR ERVK 0 421 1 4 994 369 274 0 0 chr9 53729198 53729293 -70346879 + RLTR6-int LTR ERV1 4759 4853 -2599 4 994 389 314 45 22 chr9 53729514 53729693 -70346479 + RLTR41 LTR ERV1 264 446 0 4 994 464 239 9 0 chr9 53729698 53729807 -70346365 + RLTR6-int LTR ERV1 5055 5164 -2614 4 994 470 292 50 65 chr9 53729808 53729947 -70346225 + MuRRS4-int LTR ERV1 3847 3970 -1093 4 994 912 239 246 41 chr9 53730393 53730860 -70345312 + RMER2 LTR ERV1 1 563 -4 4 994 2854 129 5 12 chr9 53730906 53731328 -70344844 + MTC LTR MaLR 3 421 0 4 994 1556 274 57 41 chr9 53731328 53731818 -70344354 - MTEa-int LTR MaLR -530 1050 553 4 994 336 79 12 50 chr9 53732517 53732597 -70343575 + (CAAAAA)n Simple_repeat Simple_repeat 1 77 0 4 994 578 240 46 12 chr9 53732622 53732795 -70343377 - MTEa-int LTR MaLR -1061 519 341 4 994 23465 65 2 5 chr9 53732801 53736505 -70339667 - L1Md_F2 LINE L1 -9 6573 2884 4 994 180 0 0 0 chr9 53736520 53736540 -70339632 + (T)n Simple_repeat Simple_repeat 1 20 0 4 994 810 255 96 18 chr9 53736553 53736833 -70339339 - MTEa-int LTR MaLR -1276 304 3 4 994 744 280 140 71 chr9 53736833 53737178 -70338994 - MTEa LTR MaLR -10 369 1 4 994 387 0 0 0 chr9 53737785 53737828 -70338344 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 994 723 229 14 0 chr9 53738296 53738436 -70337736 + B1_Mur1 SINE Alu 1 142 -7 5 994 379 318 88 60 chr9 53738747 53739132 -70337040 - MLT1H LTR MaLR -1 548 153 5 124 315 312 32 8 chr9 53739461 53739587 -70336585 - MLT1H LTR MaLR -395 154 26 5 995 586 188 0 0 chr9 53739893 53740005 -70336167 + ORR1C1 LTR MaLR 1 112 -266 5 995 3848 153 26 17 chr9 53740013 53740676 -70335496 + Lx7 LINE L1 6792 7460 -236 5 995 458 141 144 192 chr9 53740684 53740851 -70335321 + ORR1C2-int LTR MaLR 1212 1370 0 5 995 1429 198 0 221 chr9 53740851 53741344 -70334828 + ORR1C2 LTR MaLR 1 384 0 5 995 325 248 32 90 chr9 53742027 53742099 -70334073 + RMER15 LTR ERVL 302 374 -201 5 995 3425 70 50 2 chr9 53742099 53742559 -70333613 - RLTR45 LTR ERVK 0 482 1 5 995 325 248 32 90 chr9 53742559 53742641 -70333531 + RMER15 LTR ERVL 375 447 -128 5 995 526 236 101 6 chr9 53742845 53743003 -70333169 + RMER15 LTR ERVL 403 575 0 5 995 399 56 0 0 chr9 53743232 53743286 -70332886 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 5 995 210 293 58 7 chr9 53743382 53743493 -70332679 + MIR SINE MIR 66 186 -82 5 995 232 219 20 0 chr9 53744160 53744222 -70331950 + MIRm SINE MIR 103 165 -103 5 995 3225 44 0 20 chr9 53744290 53744685 -70331487 + L1_Mus1 LINE L1 6181 6567 0 5 995 1059 148 19 212 chr9 53744820 53745145 -70331027 - ORR1B2 LTR MaLR -101 266 5 5 995 377 239 275 18 chr9 53745315 53745537 -70330635 + B4A SINE B4 3 281 -11 5 995 309 234 126 11 chr9 53745811 53745906 -70330266 + PB1D10 SINE Alu 1 106 -11 5 995 207 306 56 56 chr9 53746783 53746873 -70329299 - MIR3 SINE MIR -3 205 116 5 995 288 186 114 0 chr9 53747287 53747357 -70328815 - ID4 SINE ID -5 78 1 5 995 431 326 165 21 chr9 53747783 53748068 -70328104 - MLT1H LTR MaLR -127 422 97 5 995 201 29 88 0 chr9 53748741 53748775 -70327397 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 995 1293 223 100 58 chr9 53749113 53749565 -70326607 - RMER13A LTR ERVK -389 471 1 5 995 226 364 39 0 chr9 53749629 53749706 -70326466 + MLT1K LTR MaLR 168 247 -348 5 995 333 68 0 0 chr9 53750366 53750410 -70325762 + (CCCCCT)n Simple_repeat Simple_repeat 3 46 0 5 995 2023 164 19 19 chr9 53750419 53750574 -70325598 + ORR1D1 LTR MaLR 1 162 -212 5 995 180 0 0 0 chr9 53750574 53750594 -70325578 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 995 2023 164 19 19 chr9 53750594 53750812 -70325360 + ORR1D1 LTR MaLR 163 373 -1 5 995 391 265 83 8 chr9 53751719 53751852 -70324320 + L1MD2 LINE L1 5902 6044 -315 5 995 1101 79 0 0 chr9 53752427 53752566 -70323606 + B1_Mus1 SINE Alu 2 140 -8 5 995 222 37 0 0 chr9 53752568 53752595 -70323577 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 995 356 193 248 16 chr9 53752994 53753115 -70323057 + MLT1B LTR MaLR 22 170 -220 5 995 2583 166 35 16 chr9 53753503 53754012 -70322160 + RMER5 LTR ERV1 4 522 -12 5 995 652 252 14 64 chr9 53754172 53754392 -70321780 - RMER15 LTR ERVL -71 504 296 5 995 249 284 93 21 chr9 53754874 53754971 -70321201 + L2b LINE L2 3270 3373 -2 5 995 23 0 0 0 chr9 53755103 53755126 -70321046 + AT_rich Low_complexity Low_complexity 1 23 0 5 995 209 122 0 24 chr9 53755336 53755378 -70320794 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 995 1261 41 0 0 chr9 53755381 53755528 -70320644 - B1_Mus2 SINE Alu 0 147 1 5 995 522 0 0 0 chr9 53756078 53756136 -70320036 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 995 185 211 18 0 chr9 53756569 53756626 -70319546 + CT-rich Low_complexity Low_complexity 2 59 0 5 995 463 275 28 0 chr9 53756631 53756740 -70319432 - PB1D7 SINE Alu -8 112 1 5 995 637 181 216 22 chr9 53756813 53756994 -70319178 + B3 SINE B2 1 216 0 5 995 233 197 0 16 chr9 53757787 53757849 -70318323 + CT-rich Low_complexity Low_complexity 3 63 0 5 995 329 88 35 0 chr9 53757849 53757906 -70318266 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 5 995 566 246 52 0 chr9 53758910 53759044 -70317128 + B1_Mur1 SINE Alu 9 149 0 5 995 387 0 0 0 chr9 53760385 53760428 -70315744 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 995 1047 166 41 10 chr9 53760993 53761188 -70314984 - B3 SINE B2 -14 202 2 5 995 513 0 0 0 chr9 53761203 53761260 -70314912 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 995 600 157 19 0 chr9 53761270 53761378 -70314794 - B1_Mur3 SINE Alu -34 115 6 5 995 239 284 119 64 chr9 53761459 53761568 -70314604 - B4A SINE B4 0 292 178 5 995 443 279 15 23 chr9 53761583 53761715 -70314457 - B4 SINE B4 -156 136 6 5 995 2010 245 17 55 chr9 53762428 53762954 -70313218 - Lx6 LINE L1 0 7460 6955 5 995 233 222 40 27 chr9 53763124 53763198 -70312974 - L1MA5 LINE L1 -42 6258 6184 5 995 226 296 136 14 chr9 53763831 53763978 -70312194 - MIRc SINE MIR -48 220 56 5 995 450 53 0 0 chr9 53764735 53764792 -70311380 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 5 995 978 48 0 0 chr9 53765192 53765317 -70310855 - B1_Mus1 SINE Alu -15 133 9 5 995 453 205 0 107 chr9 53765212 53765343 -70310829 - MT2B LTR ERVL -337 264 148 5 995 387 314 92 72 chr9 53766293 53766781 -70309391 - HAL1 LINE L1 -711 1796 1299 5 995 766 236 40 0 chr9 53766804 53766952 -70309220 - RSINE1 SINE B4 -6 159 6 5 995 354 292 55 7 chr9 53767696 53767841 -70308331 + L1M5 LINE L1 5579 5730 -394 5 995 2435 89 9 0 chr9 53767854 53768178 -70307994 + ORR1A2 LTR MaLR 1 327 0 5 995 180 0 0 0 chr9 53768599 53768619 -70307553 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 995 423 331 53 7 chr9 53768622 53768662 -70307510 - RSINE1 SINE B4 -1 164 125 5 995 384 40 0 0 chr9 53768662 53768712 -70307460 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 995 423 331 53 7 chr9 53768712 53768823 -70307349 - RSINE1 SINE B4 -41 124 6 5 995 479 267 67 0 chr9 53768955 53769075 -70307097 - B3 SINE B2 -34 182 55 5 995 286 192 0 35 chr9 53769469 53769532 -70306640 + B1F SINE Alu 56 148 -1 5 995 549 0 0 0 chr9 53769649 53769710 -70306462 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 995 567 0 0 0 chr9 53769710 53769772 -70306400 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 995 26 74 0 0 chr9 53770885 53770939 -70305233 + AT_rich Low_complexity Low_complexity 1 54 0 5 995 801 172 0 46 chr9 53771221 53771373 -70304799 + B1_Mur1 SINE Alu 2 146 -3 5 995 236 30 30 0 chr9 53771401 53771434 -70304738 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 995 282 212 10 20 chr9 53772568 53772669 -70303503 + C-rich Low_complexity Low_complexity 2 101 0 5 995 290 328 58 16 chr9 53772773 53772894 -70303278 - ID_B1 SINE B4 -15 209 84 5 995 183 42 0 0 chr9 53772949 53772973 -70303199 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 5 995 366 341 39 0 chr9 53773225 53773354 -70302818 - RSINE1 SINE B4 -29 136 3 5 995 198 0 0 0 chr9 53773427 53773449 -70302723 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 995 491 243 2 31 chr9 53774706 53774859 -70301313 - B3A SINE B2 -75 141 1 5 995 457 244 333 41 chr9 53774978 53775184 -70300988 - B4A SINE B4 -22 270 5 5 995 226 236 103 41 chr9 53775226 53775323 -70300849 + PB1D9 SINE Alu 11 113 -7 5 995 305 228 143 38 chr9 53775280 53775385 -70300787 + B4A SINE B4 177 292 0 5 995 342 0 0 0 chr9 53775407 53775445 -70300727 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 995 385 271 0 41 chr9 53775571 53775694 -70300478 + ID_B1 SINE B4 85 202 -22 5 995 254 385 46 6 chr9 53775737 53775912 -70300260 - MER58A DNA MER1_type -42 182 1 5 995 219 269 73 31 chr9 53776600 53776696 -70299476 - PB1D10 SINE Alu 0 117 18 5 995 219 254 68 0 chr9 53776770 53776829 -70299343 + B4A SINE B4 83 145 -147 5 995 487 300 8 8 chr9 53776779 53776910 -70299262 + B1F SINE Alu 11 141 -8 5 995 2137 196 62 62 chr9 53777219 53777752 -70298420 + MT2A LTR ERVL 1 533 0 5 995 191 32 65 0 chr9 53777785 53777816 -70298356 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 5 995 361 209 294 48 chr9 53778355 53778501 -70297671 - B3A SINE B2 -16 182 1 5 995 503 248 0 0 chr9 53779573 53779682 -70296490 - B1F SINE Alu -1 148 40 5 995 315 0 0 0 chr9 53779745 53779780 -70296392 + (T)n Simple_repeat Simple_repeat 1 35 0 5 995 755 41 0 0 chr9 53779780 53779878 -70296294 - B1_Mus2 SINE Alu 0 147 50 5 995 180 0 0 0 chr9 53779902 53779922 -70296250 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 5 995 225 0 0 0 chr9 53779936 53779961 -70296211 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 5 995 204 162 54 0 chr9 53780078 53780115 -70296057 + polypurine Low_complexity Low_complexity 1 39 0 5 995 553 222 20 104 chr9 53780552 53780576 -70295596 - B2_Mm2 SINE B2 -10 185 161 5 995 306 0 0 0 chr9 53780576 53780610 -70295562 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 995 878 219 12 4 chr9 53780610 53780786 -70295386 - B3A SINE B2 -26 172 2 5 995 799 157 6 6 chr9 53781667 53781847 -70294325 + GA-rich Low_complexity Low_complexity 1 180 0 5 995 1600 116 5 0 chr9 53782354 53782578 -70293594 - URR1B DNA MER1_type 0 225 1 5 995 513 190 236 0 chr9 53782693 53782867 -70293305 - B3 SINE B2 0 216 2 5 995 211 238 125 16 chr9 53783217 53783281 -70292891 - RSINE1 SINE B4 -36 129 59 5 995 429 20 0 0 chr9 53784778 53784828 -70291344 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 995 811 62 41 7 chr9 53785498 53785645 -70290527 - RMER17B LTR ERVK -495 463 312 5 995 192 77 0 0 chr9 53786393 53786419 -70289753 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 995 202 211 0 0 chr9 53786677 53786715 -70289457 + CT-rich Low_complexity Low_complexity 2 39 0 5 995 922 235 20 0 chr9 53786745 53786945 -70289227 - B3 SINE B2 -8 208 5 5 995 735 33 0 0 chr9 53787378 53787468 -70288704 + (GA)n Simple_repeat Simple_repeat 1 90 0 6 995 1129 255 36 7 chr9 53789232 53789512 -70286660 + B4A SINE B4 1 288 -4 6 995 26 74 0 0 chr9 53789557 53789611 -70286561 + AT_rich Low_complexity Low_complexity 1 54 0 6 995 22 56 0 0 chr9 53789664 53789700 -70286472 + AT_rich Low_complexity Low_complexity 1 36 0 6 995 247 127 16 16 chr9 53789703 53789767 -70286405 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 995 414 274 104 43 chr9 53789787 53789951 -70286221 - B3A SINE B2 -16 182 9 6 995 231 170 0 0 chr9 53790369 53790416 -70285756 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 995 22 0 0 0 chr9 53790514 53790536 -70285636 + AT_rich Low_complexity Low_complexity 1 22 0 6 995 239 323 11 21 chr9 53790708 53790803 -70285369 + MIR3 SINE MIR 67 160 -48 6 995 806 55 0 9 chr9 53792466 53792575 -70283597 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 6 995 219 229 0 0 chr9 53792874 53792935 -70283237 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 995 565 260 82 0 chr9 53792946 53793092 -70283080 - RSINE1 SINE B4 -6 159 2 6 995 390 42 0 0 chr9 53795263 53795311 -70280861 + (TATG)n Simple_repeat Simple_repeat 2 49 0 6 995 662 252 152 8 chr9 53795397 53795633 -70280539 + Lx8 LINE L1 6983 7252 -221 6 995 282 258 89 44 chr9 53795645 53795803 -70280369 + Lx8 LINE L1 7303 7467 -6 6 995 1151 281 143 15 chr9 53796365 53797142 -70279030 + L1MC3 LINE L1 6724 7599 -186 6 995 361 284 87 10 chr9 53797158 53797261 -70278911 + RSINE1 SINE B4 14 124 -41 6 995 441 0 0 0 chr9 53797261 53797310 -70278862 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 995 302 302 36 7 chr9 53797399 53797572 -70278600 + L1MC4a LINE L1 7681 7850 -32 6 995 432 0 0 0 chr9 53797757 53797805 -70278367 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 995 432 0 0 0 chr9 53797815 53797863 -70278309 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 995 437 231 132 77 chr9 53797890 53798110 -70278062 - RMER20B LTR ERVK -214 413 182 6 995 681 114 9 0 chr9 53798445 53798550 -70277622 + B2_Mm1t SINE B2 3 108 -85 6 995 1131 209 5 0 chr9 53798755 53798965 -70277207 + B3 SINE B2 6 216 0 6 995 244 366 105 20 chr9 53798976 53799224 -70276948 - L2 LINE L2 -621 2798 2530 6 995 249 33 0 0 chr9 53799429 53799459 -70276713 + (T)n Simple_repeat Simple_repeat 1 30 0 6 995 446 306 151 33 chr9 53799753 53800057 -70276115 - Lx9 LINE L1 -208 7436 7097 6 995 2833 29 6 23 chr9 53800176 53800529 -70275643 - L1Md_F2 LINE L1 0 6582 6236 6 995 260 191 62 31 chr9 53800675 53800740 -70275432 - Lx7 LINE L1 -941 6755 6689 6 995 450 0 0 0 chr9 53801998 53802048 -70274124 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 995 288 0 0 0 chr9 53802048 53802079 -70274093 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 995 680 318 29 12 chr9 53802096 53802338 -70273834 - B4A SINE B4 -44 248 3 6 995 180 36 0 67 chr9 53802776 53802806 -70273366 + L3 LINE CR1 754 781 -3708 6 995 262 184 0 0 chr9 53803176 53803225 -70272947 - B1_Mur4 SINE Alu -99 51 3 6 995 321 333 94 16 chr9 53803276 53803468 -70272704 - MIR SINE MIR 0 262 56 6 995 947 181 87 10 chr9 53803802 53803997 -70272175 + B3 SINE B2 1 210 -6 6 995 770 261 102 18 chr9 53805571 53805597 -70270575 - B4A SINE B4 -47 245 220 6 995 3442 33 5 0 chr9 53805597 53805991 -70270181 + MTA_Mm LTR MaLR 1 396 0 6 995 770 261 102 18 chr9 53805991 53806190 -70269982 - B4A SINE B4 -73 219 1 6 995 364 222 124 0 chr9 53806712 53806809 -70269363 + B1F SINE Alu 12 119 -1 6 995 36140 35 0 0 chr9 53806985 53812195 -70263977 + L1Md_T LINE L1 283 5589 -297 6 995 9114 8 0 0 chr9 53812195 53813191 -70262981 + L1Md_T LINE L1 5590 6585 0 6 995 569 301 53 59 chr9 53813397 53813754 -70262418 + MLT2B2 LTR ERVL 1 506 -61 6 995 225 0 0 0 chr9 53813754 53813779 -70262393 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 995 666 0 0 0 chr9 53813782 53813856 -70262316 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 995 459 244 50 94 chr9 53813856 53813925 -70262247 + MLT2B2 LTR ERVL 507 567 0 6 995 26 30 0 0 chr9 53814267 53814300 -70261872 + AT_rich Low_complexity Low_complexity 1 33 0 6 995 3695 235 51 91 chr9 53815382 53816488 -70259684 + Lx8 LINE L1 6411 7471 -2 6 995 572 194 0 27 chr9 53816526 53816637 -70259535 + PB1D9 SINE Alu 7 114 -6 6 995 475 307 117 0 chr9 53816966 53817129 -70259043 + B3A SINE B2 1 182 -16 6 995 366 325 16 31 chr9 53817386 53817513 -70258659 - RSINE1 SINE B4 0 165 41 6 995 545 256 86 14 chr9 53817598 53817737 -70258435 - B1_Mur1 SINE Alu 0 149 1 6 995 375 225 66 16 chr9 53818545 53818667 -70257505 + B1F SINE Alu 22 149 0 6 995 396 0 0 0 chr9 53819405 53819449 -70256723 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 6 995 1061 213 0 69 chr9 53819544 53819776 -70256396 + B3 SINE B2 1 216 0 6 995 21 36 0 0 chr9 53819776 53819804 -70256368 + AT_rich Low_complexity Low_complexity 1 28 0 6 995 296 150 11 81 chr9 53819908 53819995 -70256177 + Lx8 LINE L1 6992 7072 -401 6 995 435 19 0 0 chr9 53820196 53820248 -70255924 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 995 458 259 42 21 chr9 53820535 53820724 -70255448 - MER53 DNA hAT 0 193 1 6 995 24 32 0 0 chr9 53822987 53823018 -70253154 + GC_rich Low_complexity Low_complexity 1 31 0 6 995 24 0 0 0 chr9 53823164 53823188 -70252984 + GC_rich Low_complexity Low_complexity 1 24 0 6 995 248 346 39 1 chr9 53824043 53824164 -70252008 - L2a LINE L2 -32 3394 3238 6 995 232 227 73 29 chr9 53824170 53824238 -70251934 + 4.5SRNA scRNA scRNA 18 88 -6 6 995 451 165 0 12 chr9 53824177 53824257 -70251915 + B1_Mus1 SINE Alu 33 111 -37 6 995 1191 112 0 0 chr9 53825152 53825331 -70250841 + (GAA)n Simple_repeat Simple_repeat 2 180 0 6 995 402 21 0 0 chr9 53825331 53825377 -70250795 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 6 995 544 220 75 15 chr9 53825381 53825515 -70250657 + B1_Mur2 SINE Alu 1 142 -7 6 995 194 62 0 30 chr9 53825515 53825548 -70250624 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 995 21 71 0 0 chr9 53826909 53826951 -70249221 + AT_rich Low_complexity Low_complexity 1 42 0 6 995 523 226 113 0 chr9 53827110 53827243 -70248929 - B1F1 SINE Alu -1 148 1 6 995 359 310 0 0 chr9 53827249 53827349 -70248823 - PB1D10 SINE Alu -7 110 11 6 995 408 82 0 0 chr9 53827666 53827727 -70248445 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 995 637 286 29 19 chr9 53827845 53828052 -70248120 - B3 SINE B2 -6 210 2 6 995 381 22 0 0 chr9 53828281 53828327 -70247845 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 6 995 214 280 194 0 chr9 53828327 53828420 -70247752 - B1F1 SINE Alu -13 136 26 6 995 414 39 0 0 chr9 53828431 53828483 -70247689 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 995 241 244 47 16 chr9 53828484 53828613 -70247559 + (TA)n Simple_repeat Simple_repeat 2 134 0 6 995 297 75 0 0 chr9 53829113 53829153 -70247019 + (TTTTC)n Simple_repeat Simple_repeat 5 44 0 6 995 279 0 0 0 chr9 53829322 53829353 -70246819 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 995 375 247 13 0 chr9 53829481 53829558 -70246614 - ID4 SINE ID -4 79 2 6 995 216 0 0 0 chr9 53829648 53829672 -70246500 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 6 995 668 202 155 0 chr9 53829715 53829883 -70246289 + B3A SINE B2 5 198 0 6 995 278 230 33 33 chr9 53830528 53830618 -70245554 + MER5B DNA MER1_type 88 177 -1 6 995 523 224 116 30 chr9 53831029 53831227 -70244945 - MIR SINE MIR -8 254 40 6 995 341 316 11 38 chr9 53831253 53831437 -70244735 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 6 995 1775 153 116 0 chr9 53831455 53831801 -70244371 + ORR1B1 LTR MaLR 1 386 -8 6 995 462 285 0 48 chr9 53831811 53831999 -70244173 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 6 995 461 286 6 34 chr9 53832081 53832258 -70243914 + (CATATA)n Simple_repeat Simple_repeat 5 176 0 6 995 203 263 0 21 chr9 53832278 53832375 -70243797 + (CATATA)n Simple_repeat Simple_repeat 6 100 0 6 995 240 224 0 0 chr9 53832487 53832536 -70243636 - B3A SINE B2 -56 142 94 6 995 513 274 70 25 chr9 53832786 53832972 -70243200 + B3 SINE B2 16 189 -27 6 995 3236 264 61 92 chr9 53832994 53833177 -70242995 - L1_Rod LINE L1 -728 5119 4941 6 995 6618 83 7 14 chr9 53833177 53834100 -70242072 - Lx2A LINE L1 -4 7004 6089 6 995 3236 264 61 92 chr9 53834100 53835432 -70240740 - L1_Rod LINE L1 -907 4940 3651 6 995 613 185 27 0 chr9 53835442 53835588 -70240584 + CT-rich Low_complexity Low_complexity 2 151 0 6 995 409 225 0 0 chr9 53835731 53835820 -70240352 + B3 SINE B2 103 191 -25 6 995 5207 171 68 17 chr9 53835907 53836129 -70240043 - RMER1B Other Other -2 1064 840 6 995 3438 38 2 0 chr9 53836129 53836524 -70239648 - MTA_Mm LTR MaLR 0 396 1 6 995 5207 171 68 17 chr9 53836524 53837266 -70238906 - RMER1B Other Other -227 839 50 6 995 468 0 0 0 chr9 53837903 53837955 -70238217 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 995 493 244 79 50 chr9 53839390 53839652 -70236520 + RMER20A LTR ERVK 234 492 -135 6 995 228 252 18 144 chr9 53839691 53839858 -70236314 + RMER20A LTR ERVK 461 606 -21 6 995 287 265 0 78 chr9 53839842 53839932 -70236240 + RMER20A LTR ERVK 504 586 -41 6 995 239 89 0 62 chr9 53839976 53840024 -70236148 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 6 995 221 111 0 43 chr9 53840053 53840100 -70236072 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 6 995 253 174 0 0 chr9 53840106 53840152 -70236020 - B3 SINE B2 -75 141 96 6 995 320 273 5 66 chr9 53840532 53840600 -70235572 - PB1D10 SINE Alu -39 110 45 6 995 3091 23 0 3 chr9 53840600 53840947 -70235225 + ORR1A0 LTR MaLR 1 346 0 6 995 320 266 0 69 chr9 53840947 53840991 -70235181 - PB1D10 SINE Alu -72 45 2 6 995 316 287 37 65 chr9 53841162 53841270 -70234902 + B3 SINE B2 1 105 -111 6 995 317 119 34 0 chr9 53841396 53841455 -70234717 + (CCCTAA)n Simple_repeat Simple_repeat 3 63 0 7 995 240 309 37 0 chr9 53842175 53842311 -70233861 + (CCCTAA)n Simple_repeat Simple_repeat 2 142 0 7 995 306 302 29 17 chr9 53842351 53842523 -70233649 + (CCCTAA)n Simple_repeat Simple_repeat 3 176 0 7 995 269 338 42 14 chr9 53842589 53842805 -70233367 - MERVK26-int LTR ERVK -3758 2784 2563 7 995 3518 83 4 47 chr9 53842905 53843420 -70232752 + L1_Mus4 LINE L1 6144 6636 0 7 995 571 357 65 55 chr9 53843435 53844380 -70231792 - MERVK26-int LTR ERVK -4437 2482 1529 7 995 475 330 25 20 chr9 53844477 53844675 -70231497 - MERVK26-int LTR ERVK -5445 1474 1276 7 995 401 275 143 49 chr9 53845353 53845640 -70230532 - MERVK26-int LTR ERVK -6455 464 151 7 995 442 248 24 21 chr9 53846062 53846211 -70229961 - RMER20B LTR ERVK -369 147 1 7 995 183 129 0 0 chr9 53846351 53846382 -70229790 + (CCCTAA)n Simple_repeat Simple_repeat 6 36 0 7 995 222 271 0 0 chr9 53846407 53846466 -70229706 + (CCCTAA)n Simple_repeat Simple_repeat 4 62 0 7 995 187 226 48 0 chr9 53846794 53846878 -70229294 + (CCCTAA)n Simple_repeat Simple_repeat 3 90 0 7 995 3851 166 125 4 chr9 53847418 53848283 -70227889 - RMER19B LTR ERVK -6 896 1 7 995 6067 129 104 60 chr9 53848283 53849453 -70226719 - MurERV4_19-int LTR ERVK 0 5780 4559 7 995 2361 76 3 3 chr9 53849453 53849783 -70226389 - IAPEY_LTR LTR ERVK -17 368 39 7 995 21900 55 3 6 chr9 53849795 53852514 -70223658 - IAPEy-int LTR ERVK 0 7513 4804 7 995 7079 118 8 11 chr9 53852514 53853576 -70222596 - IAPEy-int LTR ERVK -6455 1058 1 7 995 2365 68 15 3 chr9 53853576 53853903 -70222269 - IAPEY_LTR LTR ERVK 0 385 55 7 995 5908 116 39 13 chr9 53853903 53854843 -70221329 - MurERV4_19-int LTR ERVK -1228 4552 3588 7 995 1274 80 17 0 chr9 53854835 53855010 -70221162 - MurERV4_19-int LTR ERVK -2329 3451 3274 7 995 3084 84 23 2 chr9 53855009 53855436 -70220736 - MurERV4_19-int LTR ERVK -2632 3148 2713 7 995 606 118 0 0 chr9 53855436 53855529 -70220643 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 7 995 1179 62 0 0 chr9 53855534 53855680 -70220492 - B1_Mus1 SINE Alu -2 146 1 7 995 2407 112 3 22 chr9 53855680 53856038 -70220134 - MurERV4_19-int LTR ERVK -3055 2725 2375 7 995 1581 71 52 0 chr9 53856052 53856262 -70219910 - MurERV4_19-int LTR ERVK -3838 1942 1722 7 995 4544 187 8 78 chr9 53856720 53857821 -70218351 + RLTR21 LTR ERVK 1 1024 -548 7 995 340 282 18 0 chr9 53857972 53858082 -70218090 + (CCCTAA)n Simple_repeat Simple_repeat 4 115 0 7 995 342 326 11 0 chr9 53858155 53858447 -70217725 + (CCCTAA)n Simple_repeat Simple_repeat 1 295 0 7 995 793 138 26 0 chr9 53859090 53859242 -70216930 + CT-rich Low_complexity Low_complexity 4 159 0 7 995 258 309 47 47 chr9 53859427 53859512 -70216660 + LTR16B2 LTR ERVL 8 92 -370 7 995 779 156 15 0 chr9 53860142 53860346 -70215826 + CT-rich Low_complexity Low_complexity 1 206 0 7 995 547 318 94 52 chr9 53860404 53860712 -70215460 + RMER13A LTR ERVK 540 860 0 7 995 306 228 32 32 chr9 53861393 53861488 -70214684 - IAPEz-int LTR ERVK -3942 3738 3644 7 995 275 304 69 39 chr9 53861652 53861782 -70214390 - IAPEz-int LTR ERVK -3932 3321 3188 7 995 2856 106 43 24 chr9 53864131 53864597 -70211575 - IAPLTR2_Mm LTR ERVK 0 475 1 7 995 14570 53 8 3 chr9 53864599 53866361 -70209811 - IAPEz-int LTR ERVK -2 6479 4708 7 995 1927 82 4 0 chr9 53866388 53866633 -70209539 - IAPEz-int LTR ERVK -5183 2497 2252 7 995 10133 48 68 75 chr9 53866634 53868114 -70208058 - IAPEz-int LTR ERVK -5004 1477 9 7 995 2873 101 43 24 chr9 53868115 53868581 -70207591 - IAPLTR2_Mm LTR ERVK 0 475 1 7 995 230 250 0 0 chr9 53868833 53868881 -70207291 + CT-rich Low_complexity Low_complexity 3 50 0 7 995 537 319 7 0 chr9 53869058 53869199 -70206973 + B1F SINE Alu 3 144 -5 7 995 247 217 9 9 chr9 53869609 53869716 -70206456 + (TG)n Simple_repeat Simple_repeat 2 108 0 7 995 235 226 32 0 chr9 53869738 53869800 -70206372 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 995 225 188 25 12 chr9 53869837 53869918 -70206254 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 995 814 56 0 0 chr9 53870345 53870452 -70205720 - B1_Mus1 SINE Alu -41 107 1 7 996 378 237 113 9 chr9 53870612 53870727 -70205445 + LTR50 LTR ERVL 8 134 -661 7 996 1830 248 72 38 chr9 53871280 53871958 -70204214 + L1_Mur3 LINE L1 4010 4710 -1170 7 996 1551 257 38 9 chr9 53871986 53872377 -70203795 - MTD LTR MaLR -14 405 18 7 996 1231 184 150 48 chr9 53872397 53872791 -70203381 - MTD-int LTR MaLR -3 1255 822 7 996 564 15 0 0 chr9 53872810 53872875 -70203297 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 996 2013 282 74 28 chr9 53872911 53873869 -70202303 + L1MA6 LINE L1 5299 6300 0 7 996 643 87 19 0 chr9 53875647 53875751 -70200421 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 7 996 496 258 42 0 chr9 53875757 53875877 -70200295 - RSINE1 SINE B4 -12 153 29 7 996 195 100 0 0 chr9 53876492 53876522 -70199650 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 996 304 257 0 0 chr9 53876546 53876616 -70199556 + BC1_Mm scRNA scRNA 1 70 -82 7 996 435 19 0 0 chr9 53876618 53876670 -70199502 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 996 537 252 24 0 chr9 53876670 53876793 -70199379 - B1F2 SINE Alu -19 130 5 7 996 230 333 64 21 chr9 53876796 53876937 -70199235 + Kanga1d DNA Tc2 248 394 -215 7 996 330 250 67 22 chr9 53877051 53877141 -70199031 - B1F SINE Alu -55 94 1 7 996 665 253 54 24 chr9 53877763 53877929 -70198243 + B3A SINE B2 13 183 -15 7 996 575 274 94 61 chr9 53878150 53878480 -70197692 + MLT1D LTR MaLR 4 344 -161 7 996 249 361 21 0 chr9 53878499 53878596 -70197576 + MLT1D LTR MaLR 396 494 -11 7 996 207 0 0 0 chr9 53878850 53878873 -70197299 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 996 210 150 0 0 chr9 53879092 53879132 -70197040 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 996 502 311 37 9 chr9 53879748 53879962 -70196210 + CR1_Mam LINE CR1 1514 1733 -471 7 996 7679 48 1 3 chr9 53880220 53881145 -70195027 + L1Md_F2 LINE L1 5639 6561 -21 7 996 29 28 0 0 chr9 53881266 53881302 -70194870 + AT_rich Low_complexity Low_complexity 1 36 0 7 996 299 290 21 78 chr9 53881659 53881799 -70194373 + Charlie7 DNA MER1_type 445 576 -2036 7 996 356 230 14 0 chr9 53881799 53881873 -70194299 + B1F1 SINE Alu 1 75 -74 7 996 189 0 0 0 chr9 53882132 53882153 -70194019 + (T)n Simple_repeat Simple_repeat 1 21 0 7 996 195 308 155 15 chr9 53883370 53883531 -70192641 - MIRb SINE MIR -68 200 25 7 996 829 247 57 113 chr9 53883575 53883963 -70192209 + ORR1D1 LTR MaLR 4 369 -5 7 996 582 15 0 0 chr9 53884622 53884689 -70191483 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 996 645 225 15 38 chr9 53884877 53885054 -70191118 + B3A SINE B2 1 162 -31 7 996 423 0 0 0 chr9 53885054 53885101 -70191071 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 996 316 280 36 103 chr9 53885101 53885118 -70191054 + B2_Mm1t SINE B2 163 182 -11 7 996 213 232 53 18 chr9 53885325 53885382 -70190790 - B4 SINE B4 -210 82 24 7 996 262 228 63 63 chr9 53885734 53885845 -70190327 - L1M5 LINE L1 -603 5591 5481 7 996 360 354 68 54 chr9 53885976 53886328 -70189844 - L1M5 LINE L1 -1035 5111 4755 7 996 263 294 97 11 chr9 53886537 53886630 -70189542 + RSINE1 SINE B4 48 148 -17 7 996 249 252 91 64 chr9 53886973 53887083 -70189089 - L1M5 LINE L1 -2020 4126 4014 7 996 978 224 76 4 chr9 53887116 53887353 -70188819 - RMER5 LTR ERV1 -280 254 1 7 996 23 97 0 0 chr9 53888520 53888592 -70187580 + AT_rich Low_complexity Low_complexity 1 72 0 7 996 6383 48 1 0 chr9 53889864 53890666 -70185506 + L1_Mus1 LINE L1 5795 6567 0 7 996 361 253 54 14 chr9 53890681 53890829 -70185343 - L1ME2 LINE L1 -302 5862 5709 7 996 28 0 0 0 chr9 53890846 53890874 -70185298 + AT_rich Low_complexity Low_complexity 1 28 0 7 996 263 28 28 0 chr9 53891027 53891063 -70185109 + (CAAAT)n Simple_repeat Simple_repeat 2 38 0 7 996 1516 281 49 70 chr9 53891214 53891783 -70184389 + RMER1B Other Other 7 510 -556 7 996 4730 213 25 46 chr9 53891780 53893051 -70183121 + RMER1A Other Other 1 1024 -6 7 996 203 132 53 0 chr9 53894972 53895010 -70181162 + (CAAAC)n Simple_repeat Simple_repeat 5 44 0 7 996 577 172 33 41 chr9 53895306 53895427 -70180745 - RMER5 LTR ERV1 0 534 415 7 996 468 0 0 0 chr9 53895789 53895841 -70180331 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 996 198 0 0 0 chr9 53895947 53895969 -70180203 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 7 996 612 0 0 0 chr9 53896366 53896434 -70179738 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 7 996 646 242 86 30 chr9 53897623 53897857 -70178315 - L1MA5 LINE L1 -299 6001 5755 7 996 185 108 27 0 chr9 53897861 53897898 -70178274 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 996 1281 266 15 30 chr9 53897898 53898076 -70178096 - L1MA5 LINE L1 -521 5779 5599 7 996 959 165 133 0 chr9 53898076 53898264 -70177908 - B3 SINE B2 -3 213 1 7 996 1281 266 15 30 chr9 53898264 53898485 -70177687 - L1MA5 LINE L1 -702 5598 5386 7 996 352 317 122 52 chr9 53899387 53899977 -70176195 - HAL1 LINE L1 -2 2505 1875 7 996 605 305 86 100 chr9 53900116 53900407 -70175765 - ORR1E LTR MaLR -87 287 1 7 996 356 319 8 25 chr9 53900594 53900716 -70175456 - HAL1 LINE L1 -806 1701 1582 7 996 3389 222 38 32 chr9 53900800 53901539 -70174633 + Lx5 LINE L1 6299 7041 -9 7 996 25 0 0 0 chr9 53901608 53901633 -70174539 + AT_rich Low_complexity Low_complexity 1 25 0 7 996 3670 63 4 0 chr9 53901633 53902091 -70174081 - L1_Mus1 LINE L1 0 6567 6108 7 996 21299 95 7 0 chr9 53902091 53905028 -70171144 - L1_Mm LINE L1 -211 5672 2718 7 996 640 293 0 21 chr9 53905029 53905172 -70171000 + RSINE1 SINE B4 25 164 -1 7 996 765 61 0 0 chr9 53905220 53905319 -70170853 + (GGAGAA)n Simple_repeat Simple_repeat 1 99 0 7 996 1962 170 44 15 chr9 53905322 53905734 -70170438 + RMER15 LTR ERVL 152 575 0 7 996 256 136 183 17 chr9 53905735 53905795 -70170377 - ID4 SINE ID -13 70 1 7 996 21 0 0 0 chr9 53907130 53907151 -70169021 + AT_rich Low_complexity Low_complexity 1 21 0 7 996 26 30 0 0 chr9 53907790 53907823 -70168349 + AT_rich Low_complexity Low_complexity 1 33 0 7 996 1470 77 0 10 chr9 53907968 53908164 -70168008 + B2_Mm2 SINE B2 2 195 0 7 996 979 275 75 35 chr9 53908334 53908681 -70167491 + MTD LTR MaLR 55 415 -4 7 996 1356 219 90 25 chr9 53908690 53909089 -70167083 + MTD-int LTR MaLR 6 430 -828 7 996 197 119 24 0 chr9 53910202 53910244 -70165928 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 7 996 289 300 12 0 chr9 53910327 53910407 -70165765 - ID4 SINE ID -1 82 2 7 996 525 32 0 0 chr9 53910564 53910627 -70165545 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 7 996 500 235 216 22 chr9 53916950 53917172 -70159000 + B4A SINE B4 5 269 -23 7 996 612 226 8 8 chr9 53918221 53918355 -70157817 + B1F SINE Alu 10 143 -6 7 996 468 100 0 0 chr9 53918525 53918605 -70157567 + (TC)n Simple_repeat Simple_repeat 1 80 0 7 996 340 296 165 56 chr9 53920209 53920585 -70155587 + MTD LTR MaLR 1 417 -2 7 996 497 329 28 44 chr9 53920775 53921026 -70155146 + LTR33A_ LTR ERVL 278 524 -7 7 996 23 0 0 0 chr9 53921477 53921500 -70154672 + AT_rich Low_complexity Low_complexity 1 23 0 7 996 222 281 164 10 chr9 53921708 53921812 -70154360 - MIR3 SINE MIR -43 165 46 7 996 480 280 36 96 chr9 53922387 53922553 -70153619 + B3A SINE B2 1 156 -42 7 996 510 17 0 0 chr9 53922555 53922614 -70153558 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 996 375 23 0 0 chr9 53922614 53922657 -70153515 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 996 297 0 0 0 chr9 53922657 53922689 -70153483 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 996 324 253 28 12 chr9 53923523 53923605 -70152567 - FLAM_A SINE Alu -13 104 18 8 996 368 267 11 11 chr9 53926102 53926193 -70149979 - PB1 SINE Alu -5 122 32 8 996 259 273 120 10 chr9 53926311 53926411 -70149761 + MLT1A LTR MaLR 244 354 -20 8 996 3504 184 50 8 chr9 53926538 53927260 -70148912 + Lx7 LINE L1 2179 2930 -2950 8 996 7215 212 72 16 chr9 53927255 53930003 -70146169 + Lx7 LINE L1 4411 7329 -367 8 996 28 61 0 0 chr9 53930447 53930496 -70145676 + AT_rich Low_complexity Low_complexity 1 49 0 8 996 251 281 52 10 chr9 53930584 53930681 -70145491 - MER20 DNA MER1_type 0 219 119 8 996 593 127 60 60 chr9 53930681 53930798 -70145374 + B1_Mus2 SINE Alu 1 117 -30 8 996 255 250 88 0 chr9 53930757 53930825 -70145347 - MER20 DNA MER1_type -87 132 59 8 996 575 137 16 16 chr9 53930904 53931030 -70145142 + CT-rich Low_complexity Low_complexity 1 126 0 8 996 1710 127 36 48 chr9 53931030 53931361 -70144811 - RMER4B LTR ERVK -258 327 1 8 996 271 304 83 72 chr9 53931456 53931637 -70144535 - MLT1J2 LTR MaLR 0 448 266 8 996 1179 188 51 14 chr9 53932553 53932769 -70143403 + URR1B DNA MER1_type 1 224 -1 8 996 941 119 0 7 chr9 53933051 53933203 -70142969 + (TTCTC)n Simple_repeat Simple_repeat 5 155 0 8 996 273 57 0 0 chr9 53933318 53933353 -70142819 + (GA)n Simple_repeat Simple_repeat 1 35 0 8 996 189 107 0 0 chr9 53933355 53933383 -70142789 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 996 25 0 0 0 chr9 53934000 53934025 -70142147 + AT_rich Low_complexity Low_complexity 1 25 0 8 996 194 339 15 0 chr9 53934223 53934288 -70141884 + MIR SINE MIR 14 79 -183 8 996 869 228 216 18 chr9 53934435 53934824 -70141348 + MER31B LTR ERV1 1 466 0 8 996 2316 150 79 7 chr9 53934983 53935413 -70140759 - RMER6B LTR ERVK 0 461 1 8 996 2501 90 19 5 chr9 53935751 53936118 -70140054 + L1_Mus4 LINE L1 6265 6636 0 8 996 252 77 0 0 chr9 53936140 53936179 -70139993 + (T)n Simple_repeat Simple_repeat 1 39 0 8 996 331 292 65 14 chr9 53936499 53936638 -70139534 + LTR16C LTR ERVL 252 397 -92 8 996 187 54 54 0 chr9 53936714 53936751 -70139421 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 996 2471 159 32 26 chr9 53936764 53937261 -70138911 - RLTR31B_Mm LTR ERVK 0 557 58 8 996 274 167 0 0 chr9 53938028 53938076 -70138096 + B1_Mur4 SINE Alu 1 48 -102 8 996 3257 297 66 34 chr9 53938600 53939642 -70136530 + MYSERV6-int LTR ERVK 393 1453 -7506 8 996 3044 76 13 0 chr9 53939642 53940037 -70136135 + MTB LTR MaLR 1 400 0 8 996 3257 297 66 34 chr9 53940037 53940418 -70135754 + MYSERV6-int LTR ERVK 1454 1862 -7097 8 996 426 245 85 75 chr9 53940444 53940656 -70135516 + RLTR22_Mur LTR ERVK 534 747 -1101 8 996 2400 89 8 79 chr9 53940658 53941050 -70135122 + L1Md_F2 LINE L1 6219 6582 0 8 996 681 216 15 202 chr9 53941101 53941437 -70134735 + RMER12 LTR ERVK 958 1230 -92 8 996 3835 266 38 23 chr9 53941544 53943112 -70133060 + MurERV4-int LTR ERVK 3430 5180 -80 8 996 396 0 0 0 chr9 53943282 53943326 -70132846 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 996 1166 161 102 39 chr9 53943903 53944187 -70131985 + MYSERV6-int LTR ERVK 8149 8450 -509 8 996 1532 139 21 80 chr9 53944188 53944477 -70131695 + ORR1A4 LTR MaLR 1 272 -57 8 996 2493 154 20 44 chr9 53944479 53944975 -70131197 + MYSERV6-int LTR ERVK 8474 8957 -2 8 996 702 233 54 68 chr9 53944977 53945272 -70130900 + RLTR15 LTR ERVK 1 291 -68 8 996 2730 208 30 65 chr9 53945306 53946094 -70130078 + MYSERV6-int LTR ERVK 7943 8703 -256 8 996 820 221 6 111 chr9 53946148 53946470 -70129702 + MYSERV-int LTR ERVK 6279 6550 0 8 996 504 0 0 0 chr9 53946775 53946831 -70129341 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 996 360 312 38 62 chr9 53947817 53948059 -70128113 + RLTR19 LTR ERVK 359 671 -44 8 996 243 0 0 0 chr9 53948798 53948825 -70127347 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 8 996 663 135 196 13 chr9 53949240 53949398 -70126774 + B2_Mm2 SINE B2 2 188 -7 8 996 316 134 10 40 chr9 53949930 53950031 -70126141 + (TA)n Simple_repeat Simple_repeat 2 99 0 8 996 4030 158 9 52 chr9 53950188 53950940 -70125232 - RMER6D LTR ERVK 0 720 1 8 996 4171 196 15 40 chr9 53950942 53952357 -70123815 - MurERV4_19-int LTR ERVK -111 5149 2655 8 996 1394 55 0 5 chr9 53952367 53952568 -70123604 - MusHAL1 LINE L1 -59 2653 2454 8 996 419 194 0 11 chr9 53952572 53952666 -70123506 - MurERV4_19-int LTR ERVK -5434 3525 3433 8 996 414 320 159 73 chr9 53952778 53953096 -70123076 - RLTR26 LTR ERVK -94 533 168 8 996 13287 128 55 9 chr9 53953117 53955648 -70120524 - MurERV4_19-int LTR ERVK -3069 2711 66 8 996 2372 199 17 188 chr9 53955668 53956393 -70119779 - RMER19C LTR ERVK 0 611 11 8 996 2568 120 47 38 chr9 53956614 53957057 -70119115 + LTRIS5 LTR ERV1 1 447 0 8 996 1183 269 80 17 chr9 53957057 53957469 -70118703 - MYSERV6-int LTR ERVK -1954 4596 4159 8 996 2816 181 21 23 chr9 53957507 53958038 -70118134 - RLTR20B3 LTR ERVK -43 534 5 8 996 4681 174 36 12 chr9 53958042 53959033 -70117139 - MYSERV6-int LTR ERVK -4576 4383 3369 8 996 1619 310 27 17 chr9 53959053 53960027 -70116145 - MYSERV6-int LTR ERVK -5375 1175 195 8 996 21 0 0 0 chr9 53960515 53960536 -70115636 + AT_rich Low_complexity Low_complexity 1 21 0 8 996 321 115 0 62 chr9 53960812 53960877 -70115295 - L1_Mur2 LINE L1 -1246 4631 4571 8 996 1022 230 109 4 chr9 53960898 53961173 -70114999 + Lx2B LINE L1 6687 6990 -10 8 996 22 0 0 0 chr9 53961173 53961195 -70114977 + AT_rich Low_complexity Low_complexity 1 22 0 8 996 12080 160 51 128 chr9 53961208 53962706 -70113466 - L1_Mur2 LINE L1 -1287 4590 3060 8 996 1275 89 0 0 chr9 53962706 53962885 -70113287 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 8 996 12080 160 51 128 chr9 53962885 53962954 -70113218 - L1_Mur2 LINE L1 -2818 3059 2985 8 996 249 33 0 0 chr9 53962966 53962996 -70113176 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 996 942 82 44 15 chr9 53962996 53963120 -70113052 - B1_Mus1 SINE Alu -12 136 8 8 996 444 237 77 109 chr9 53963120 53963141 -70113031 - B4 SINE B4 -77 215 74 8 996 12080 160 51 128 chr9 53963141 53964285 -70111887 - L1_Mur2 LINE L1 -2893 2984 2055 8 996 252 100 0 0 chr9 53964285 53964325 -70111847 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 996 12080 161 44 96 chr9 53964325 53965444 -70110728 - L1_Mur2 LINE L1 -3823 2054 882 8 996 7244 34 32 2 chr9 53965758 53966645 -70109527 + L1Md_F3 LINE L1 5672 6584 0 8 996 501 294 13 20 chr9 53966766 53966915 -70109257 + B1F SINE Alu 1 148 -1 8 996 650 294 51 0 chr9 53966956 53967133 -70109039 + ID_B1 SINE B4 35 220 -4 8 996 345 290 59 7 chr9 53967703 53967840 -70108332 - B1F SINE Alu 0 149 1 8 996 3257 37 25 0 chr9 53968204 53968605 -70107567 - RLTR10A LTR ERVK 0 411 1 8 996 254 161 75 75 chr9 53969194 53969261 -70106911 - B1F1 SINE Alu 0 149 83 8 996 356 59 20 0 chr9 53969263 53969314 -70106858 + (CCCCCT)n Simple_repeat Simple_repeat 1 52 0 8 996 754 204 73 32 chr9 53969314 53969532 -70106640 + ORR1D1 LTR MaLR 148 374 0 8 996 586 268 6 0 chr9 53969786 53969965 -70106207 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 996 306 180 0 0 chr9 53969965 53970026 -70106146 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 996 238 171 0 0 chr9 53970026 53970067 -70106105 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 996 219 309 0 0 chr9 53970066 53970150 -70106022 + GA-rich Low_complexity Low_complexity 1 84 0 8 996 485 295 108 33 chr9 53971875 53972089 -70104083 + B4A SINE B4 1 230 -62 8 996 421 99 25 0 chr9 53972128 53972209 -70103963 + (CA)n Simple_repeat Simple_repeat 1 83 0 8 996 195 309 0 0 chr9 53972561 53972616 -70103556 - MIR3 SINE MIR -21 187 133 8 996 308 208 14 0 chr9 53972653 53972725 -70103447 - L1MB4 LINE L1 0 6184 6112 8 996 1179 75 0 0 chr9 53972725 53972872 -70103300 + B1_Mus2 SINE Alu 1 147 0 8 996 189 0 0 0 chr9 53972872 53972893 -70103279 + (A)n Simple_repeat Simple_repeat 1 21 0 8 996 183 205 0 0 chr9 53972937 53972976 -70103196 + (TA)n Simple_repeat Simple_repeat 1 39 0 8 996 234 158 18 0 chr9 53972979 53973036 -70103136 + L1MB8 LINE L1 6108 6165 -13 8 996 34477 55 3 1 chr9 53973075 53976014 -70100158 - L1Md_F2 LINE L1 0 6582 3633 8 996 3573 15 0 0 chr9 53976014 53976410 -70099762 + MTA_Mm LTR MaLR 1 396 0 8 996 34477 70 3 26 chr9 53976410 53979612 -70096560 - L1Md_F2 LINE L1 -2251 3632 511 8 996 628 267 63 28 chr9 53979747 53980001 -70096171 - L1MB4 LINE L1 -129 6051 5789 8 996 959 228 19 9 chr9 53980004 53980217 -70095955 + B3 SINE B2 1 215 -1 8 996 232 211 35 17 chr9 53980296 53980354 -70095818 + ORR1E LTR MaLR 3 61 -298 8 996 4188 150 24 14 chr9 53980446 53980801 -70095371 + RMER6D LTR ERVK 10 374 -346 8 996 382 15 75 0 chr9 53980801 53980868 -70095304 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 996 4188 150 24 14 chr9 53980868 53981210 -70094962 + RMER6D LTR ERVK 375 714 -6 8 996 259 308 76 110 chr9 53981227 53981490 -70094682 + ORR1E LTR MaLR 64 317 -42 8 996 374 255 25 32 chr9 53981509 53981667 -70094505 - L1MB4 LINE L1 -458 5722 5566 8 996 361 286 22 11 chr9 53981736 53981828 -70094344 - MER2 DNA MER2_type -1 344 252 8 996 262 182 248 20 chr9 53981839 53981940 -70094232 - MER2 DNA MER2_type -134 211 88 8 996 396 272 118 43 chr9 53982287 53982928 -70093244 - L1MEf LINE L1 -3459 2687 2000 8 996 247 257 29 0 chr9 53983047 53983117 -70093055 - ID4 SINE ID -10 73 2 8 996 381 313 50 0 chr9 53983124 53983223 -70092949 - PB1D10 SINE Alu -9 108 5 8 996 268 261 11 21 chr9 53983327 53983421 -70092751 - L1MEf LINE L1 -4238 2004 1912 8 996 239 317 109 14 chr9 53983711 53983894 -70092278 - MIR3 SINE MIR -80 196 11 8 996 369 286 29 22 chr9 53983992 53984128 -70092044 - L1MEf LINE L1 -4829 1413 1277 8 996 297 325 81 24 chr9 53984291 53984414 -70091758 - B4A SINE B4 -2 290 161 8 996 382 327 23 62 chr9 53984797 53984973 -70091199 - MLT1J LTR MaLR -340 172 4 8 996 320 284 103 6 chr9 53986824 53986980 -70089192 - L1M5 LINE L1 -348 5776 5606 8 996 338 188 14 0 chr9 53987064 53987133 -70089039 - ID_B1 SINE B4 -5 219 150 8 996 671 218 53 35 chr9 53987605 53987776 -70088396 - RLTR11B LTR ERVK -3 450 277 8 996 826 238 35 58 chr9 53987875 53988134 -70088038 - RLTR11B LTR ERVK -191 262 10 8 996 3601 71 2 20 chr9 53988329 53988592 -70087580 - L1Md_F2 LINE L1 -1 6581 6327 8 996 3963 55 2 89 chr9 53988592 53989153 -70087019 - RLTR1B LTR ERV1 0 512 1 8 996 3601 71 2 20 chr9 53989153 53989379 -70086793 - L1Md_F2 LINE L1 -256 6326 6101 8 996 297 252 30 30 chr9 53989379 53989510 -70086662 + Lx3C LINE L1 6821 6951 -25 8 996 306 0 0 0 chr9 53989516 53989550 -70086622 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 8 996 718 125 256 15 chr9 53989552 53989629 -70086543 + Lx9 LINE L1 7333 7417 -227 8 996 423 0 0 0 chr9 53989629 53989676 -70086496 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 996 234 0 0 0 chr9 53989676 53989701 -70086471 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 996 718 125 256 15 chr9 53989701 53989817 -70086355 + Lx9 LINE L1 7418 7573 -71 8 996 785 203 6 0 chr9 53989838 53990015 -70086157 + (CA)n Simple_repeat Simple_repeat 1 178 0 9 996 337 152 30 0 chr9 53990035 53990101 -70086071 + Lx9 LINE L1 7570 7637 -7 8 996 300 53 0 0 chr9 53990424 53990462 -70085710 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9 996 678 197 32 8 chr9 53990469 53990592 -70085580 - B1_Mur1 SINE Alu -20 129 4 9 996 788 275 143 24 chr9 53991401 53991736 -70084436 - MTE2b LTR MaLR -4 375 1 9 996 698 77 0 0 chr9 53991794 53991885 -70084287 + B1_Mus1 SINE Alu 2 92 -56 9 996 450 36 0 0 chr9 53991885 53991941 -70084231 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 996 652 147 16 49 chr9 53991941 53991971 -70084201 + B1_Mm SINE Alu 92 119 -28 9 996 1779 197 21 32 chr9 53992051 53992429 -70083743 + ORR1D1 LTR MaLR 1 374 0 9 996 1812 166 124 13 chr9 53992534 53992913 -70083259 - MTC LTR MaLR 0 421 1 9 996 244 413 0 0 chr9 53993042 53993117 -70083055 + ID4 SINE ID 1 75 -8 9 996 228 135 0 0 chr9 53993131 53993168 -70083004 + (ATG)n Simple_repeat Simple_repeat 1 37 0 9 996 262 246 66 0 chr9 53993289 53993350 -70082822 + B1F1 SINE Alu 10 74 -75 9 996 516 240 34 23 chr9 53993918 53994093 -70082079 - L1MD3 LINE L1 -1169 6826 6650 9 996 247 302 149 39 chr9 53994301 53994656 -70081516 - L1ME2 LINE L1 -15 6149 5756 9 996 2083 179 42 10 chr9 53994678 53995084 -70081088 - MTC LTR MaLR -2 419 1 9 996 1378 244 76 18 chr9 53995117 53995497 -70080675 + MTD LTR MaLR 18 419 0 9 996 446 248 9 0 chr9 53995607 53995720 -70080452 - L1ME2 LINE L1 -593 5569 5456 9 996 333 311 85 24 chr9 53996210 53996375 -70079797 - MIRb SINE MIR -44 224 50 9 996 1634 213 30 30 chr9 53997835 53998208 -70077964 - ORR1D1 LTR MaLR -1 373 1 9 996 1506 195 81 89 chr9 53998222 53998752 -70077420 - RLTR11A LTR ERVK -2 526 1 9 996 1296 27 0 0 chr9 53998822 53998969 -70077203 - B1_Mm SINE Alu 0 147 1 9 996 1039 31 0 0 chr9 53999038 53999165 -70077007 + B1_Mus1 SINE Alu 1 127 -21 9 996 381 231 48 0 chr9 53999286 53999390 -70076782 + LTR37B LTR ERV1 360 468 0 9 996 253 317 74 8 chr9 53999391 53999512 -70076660 + MamGypLTR1c LTR Gypsy 660 788 -15 9 996 191 330 102 107 chr9 53999653 53999850 -70076322 - L2c LINE L2 0 3387 3192 9 996 751 98 9 0 chr9 53999888 54000000 -70076172 - Lx4A LINE L1 -337 6721 6609 9 996 383 62 0 0 chr9 54000000 54000048 -70076124 - Lx4A LINE L1 -450 6608 6561 1 996 186 222 156 0 chr9 54000155 54000245 -70075927 - MIR SINE MIR -12 250 147 2 124 1317 260 21 40 chr9 54001612 54001989 -70074183 + ORR1D2 LTR MaLR 1 370 0 3 997 603 0 0 0 chr9 54002420 54002487 -70073685 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 4 997 466 274 167 51 chr9 54003508 54003843 -70072329 - LTR37A LTR ERV1 -1 425 52 5 997 240 221 142 19 chr9 54004500 54004606 -70071566 - L1ME3A LINE L1 -12 6161 6043 6 997 601 266 56 0 chr9 54004896 54005039 -70071133 + RMER1B Other Other 7 157 -909 7 997 1027 142 0 0 chr9 54005039 54005201 -70070971 + B2_Mm2 SINE B2 2 163 -32 8 997 1682 241 51 97 chr9 54005208 54006504 -70069668 + RMER1A Other Other 1 537 -493 7 997 565 271 83 41 chr9 54006704 54006970 -70069202 - RLTR12B LTR ERVK -251 277 1 9 997 2922 126 79 17 chr9 54006970 54007320 -70068852 + RMER1A Other Other 532 910 -120 1 997 342 45 0 0 chr9 54007320 54007364 -70068808 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 997 2922 126 79 17 chr9 54007364 54007483 -70068689 + RMER1A Other Other 911 1029 -1 1 997 5371 117 138 13 chr9 54007624 54007922 -70068250 - RLTR13D3 LTR ERVK 0 1114 817 1 997 4123 61 10 4 chr9 54007922 54008431 -70067741 + RLTR1B LTR ERV1 1 512 0 1 997 5371 117 138 13 chr9 54008431 54009122 -70067050 - RLTR13D3 LTR ERVK -298 816 1 1 997 369 0 0 0 chr9 54009157 54009198 -70066974 + (CCTG)n Simple_repeat Simple_repeat 1 41 0 1 997 245 246 31 0 chr9 54009217 54009282 -70066890 - L1ME3A LINE L1 -304 5869 5803 6 997 482 163 0 0 chr9 54009345 54009443 -70066729 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 997 1569 140 213 0 chr9 54009711 54010011 -70066161 - RLTR9A LTR ERVK 0 368 5 1 997 271 161 16 25 chr9 54011398 54011519 -70064653 + T-rich Low_complexity Low_complexity 3 122 0 1 997 1195 68 0 0 chr9 54011521 54011669 -70064503 - B1_Mus1 SINE Alu 0 148 1 1 997 2891 16 0 0 chr9 54013006 54013328 -70062844 - RLTRETN_Mm LTR ERVK 0 322 1 1 997 408 40 0 0 chr9 54013577 54013627 -70062545 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 997 385 253 0 14 chr9 54013997 54014145 -70062027 + (CA)n Simple_repeat Simple_repeat 1 146 0 2 997 221 344 11 0 chr9 54015224 54015314 -70060858 - ID_B1 SINE B4 -52 172 82 2 997 825 241 5 48 chr9 54015806 54016015 -70060157 + B3 SINE B2 7 206 -10 2 997 297 0 0 0 chr9 54018027 54018060 -70058112 + (GCATG)n Simple_repeat Simple_repeat 2 34 0 2 997 1349 219 93 24 chr9 54018213 54018545 -70057627 + Lx5 LINE L1 6696 7050 0 2 997 605 286 20 30 chr9 54018885 54019087 -70057085 + MER2 DNA MER2_type 86 285 -60 2 997 584 271 0 66 chr9 54019121 54019287 -70056885 + RSINE1 SINE B4 11 165 0 2 997 577 286 147 0 chr9 54020022 54020246 -70055926 + MER2 DNA MER2_type 83 339 -6 2 997 446 286 56 28 chr9 54021568 54021712 -70054460 + RSINE1 SINE B4 3 150 -15 2 997 201 195 0 0 chr9 54021731 54021772 -70054400 + (ATG)n Simple_repeat Simple_repeat 3 43 0 3 997 369 0 0 0 chr9 54022100 54022141 -70054031 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 997 319 322 158 27 chr9 54022755 54023052 -70053120 + L2a LINE L2 3091 3426 0 3 997 902 265 218 17 chr9 54023593 54023988 -70052184 + RLTR16 LTR ERVK 1 475 -30 3 997 4974 45 0 8 chr9 54024511 54025116 -70051056 + L1Md_F2 LINE L1 5982 6581 -1 3 997 431 141 0 13 chr9 54025767 54025846 -70050326 + (TGAA)n Simple_repeat Simple_repeat 3 80 0 3 997 218 330 67 11 chr9 54026511 54026600 -70049572 + L2c LINE L2 3294 3387 0 3 997 215 214 67 0 chr9 54026711 54026800 -70049372 + (TA)n Simple_repeat Simple_repeat 2 96 0 3 997 243 0 0 0 chr9 54027015 54027042 -70049130 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 997 436 232 142 21 chr9 54027237 54027378 -70048794 + MLT1D LTR MaLR 279 436 -69 3 997 185 410 57 6 chr9 54027648 54027805 -70048367 + MIR3 SINE MIR 39 203 -5 4 997 261 0 0 0 chr9 54029151 54029180 -70046992 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 997 298 221 21 0 chr9 54029682 54029777 -70046395 + GA-rich Low_complexity Low_complexity 6 102 0 4 997 208 342 40 0 chr9 54029953 54030029 -70046143 + L2a LINE L2 1585 1663 -1756 4 997 787 123 8 37 chr9 54030056 54030301 -70045871 + (CA)n Simple_repeat Simple_repeat 1 237 0 4 997 703 104 22 39 chr9 54030313 54030493 -70045679 + (CA)n Simple_repeat Simple_repeat 1 177 0 4 997 276 294 156 11 chr9 54030555 54030741 -70045431 + L2a LINE L2 2912 3124 -302 4 997 252 0 0 0 chr9 54030774 54030802 -70045370 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 997 187 217 85 158 chr9 54031347 54031429 -70044743 + L2a LINE L2 3317 3392 -34 4 997 231 305 65 19 chr9 54032999 54033153 -70043019 - MER5A DNA MER1_type -1 188 28 4 997 1060 110 34 28 chr9 54033491 54033669 -70042503 + B2_Mm2 SINE B2 2 180 -15 4 997 189 107 0 0 chr9 54035421 54035449 -70040723 + (T)n Simple_repeat Simple_repeat 1 28 0 4 997 1110 90 0 0 chr9 54035449 54035594 -70040578 - B1_Mus2 SINE Alu 0 147 3 4 997 307 256 23 11 chr9 54035635 54035722 -70040450 - PB1D10 SINE Alu -6 111 24 5 997 189 0 0 0 chr9 54036015 54036036 -70040136 + (TCC)n Simple_repeat Simple_repeat 3 23 0 5 997 204 97 0 0 chr9 54036372 54036403 -70039769 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 997 1003 115 7 7 chr9 54036686 54036826 -70039346 - B1_Mur1 SINE Alu -8 141 2 5 997 744 188 9 12 chr9 54036928 54037081 -70039091 + B1_Mus1 SINE Alu 1 147 -1 5 997 1100 124 6 0 chr9 54037097 54037275 -70038897 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 5 997 380 131 0 14 chr9 54037281 54037351 -70038821 + (GA)n Simple_repeat Simple_repeat 1 69 0 5 997 265 271 112 76 chr9 54037948 54038224 -70037948 + L1ME3B LINE L1 5798 6083 -157 5 997 606 225 0 98 chr9 54039564 54039717 -70036455 + B1_Mur1 SINE Alu 1 138 -11 5 997 189 0 0 0 chr9 54039717 54039738 -70036434 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 997 199 79 0 50 chr9 54040955 54040995 -70035177 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 6 997 27 0 0 0 chr9 54041687 54041714 -70034458 + AT_rich Low_complexity Low_complexity 1 27 0 6 997 1419 79 17 0 chr9 54041991 54042169 -70034003 + B2_Mm2 SINE B2 1 181 -14 6 997 207 114 0 0 chr9 54042413 54042448 -70033724 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 997 495 266 103 38 chr9 54042703 54042887 -70033285 - B3A SINE B2 -1 197 2 6 997 505 224 120 0 chr9 54043259 54043384 -70032788 + RSINE1 SINE B4 4 143 -22 6 997 219 114 0 0 chr9 54043389 54043424 -70032748 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 997 253 268 53 19 chr9 54043581 54043774 -70032398 + RMER15 LTR ERVL 279 504 -71 6 997 279 312 0 11 chr9 54043829 54043923 -70032249 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 997 294 167 0 0 chr9 54044689 54044773 -70031399 + (CAGA)n Simple_repeat Simple_repeat 4 87 0 6 997 376 250 10 10 chr9 54045007 54045108 -70031064 - RMER15 LTR ERVL -86 489 389 7 997 342 0 0 0 chr9 54046721 54046759 -70029413 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 997 600 288 43 6 chr9 54046777 54046941 -70029231 - B3A SINE B2 -14 184 15 7 997 324 0 0 0 chr9 54047542 54047578 -70028594 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 997 1089 92 0 0 chr9 54047580 54047722 -70028450 - B1_Mus1 SINE Alu -6 142 1 7 997 302 127 0 14 chr9 54048473 54048545 -70027627 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 7 997 1156 48 14 0 chr9 54048545 54048690 -70027482 - B1_Mus2 SINE Alu 0 147 1 7 997 21 0 0 0 chr9 54049378 54049399 -70026773 + GC_rich Low_complexity Low_complexity 1 21 0 7 997 383 218 10 0 chr9 54049502 54049603 -70026569 + CT-rich Low_complexity Low_complexity 4 105 0 7 997 186 43 0 0 chr9 54050015 54050038 -70026134 + (TCC)n Simple_repeat Simple_repeat 2 24 0 7 997 216 97 0 0 chr9 54050054 54050085 -70026087 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 8 997 242 56 0 27 chr9 54050438 54050475 -70025697 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 997 31 58 0 0 chr9 54050506 54050558 -70025614 + AT_rich Low_complexity Low_complexity 1 52 0 8 997 210 162 0 0 chr9 54052273 54052310 -70023862 + A-rich Low_complexity Low_complexity 1 37 0 8 997 210 242 65 0 chr9 54052550 54052612 -70023560 + MIR3 SINE MIR 92 157 -51 8 997 335 73 18 0 chr9 54053613 54053668 -70022504 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 8 997 968 165 11 11 chr9 54053668 54053846 -70022326 - B2_Mm2 SINE B2 -15 180 3 8 997 3063 44 0 8 chr9 54053927 54054295 -70021877 + RLTR10B2 LTR ERVK 1 365 0 8 997 860 203 14 71 chr9 54054503 54054715 -70021457 + B3 SINE B2 17 216 0 8 997 3520 47 13 41 chr9 54054982 54055450 -70020722 - L1_Mus1 LINE L1 0 6567 6113 8 997 1104 95 0 0 chr9 54055679 54055826 -70020346 + B1_Mus2 SINE Alu 1 147 0 9 997 620 136 18 0 chr9 54055848 54055958 -70020214 + (TATATG)n Simple_repeat Simple_repeat 6 117 0 9 997 377 244 0 8 chr9 54057028 54057152 -70019020 + (CA)n Simple_repeat Simple_repeat 2 124 0 9 997 1066 239 114 74 chr9 54057566 54057969 -70018203 + MTD LTR MaLR 1 419 0 9 997 975 103 51 57 chr9 54059077 54059252 -70016920 + B2_Mm2 SINE B2 2 175 -20 9 997 991 178 74 7 chr9 54059267 54059447 -70016725 + B3 SINE B2 8 200 -16 9 997 437 299 13 59 chr9 54060004 54060157 -70016015 - ID_B1 SINE B4 0 224 79 9 997 1704 174 93 50 chr9 54061676 54062114 -70014058 + RLTR9A LTR ERVK 6 437 0 9 997 567 242 324 12 chr9 54062127 54062365 -70013807 + ORR1E LTR MaLR 42 353 -6 9 997 259 202 109 95 chr9 54062850 54062987 -70013185 + CR1_Mam LINE CR1 1535 1673 -531 9 997 243 0 0 0 chr9 54063932 54063959 -70012213 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 1 997 486 295 27 27 chr9 54064705 54064855 -70011317 + B3A SINE B2 2 151 -47 1 997 297 0 0 0 chr9 54064856 54064889 -70011283 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 997 420 20 0 0 chr9 54065443 54065492 -70010680 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 997 219 69 0 0 chr9 54065774 54065803 -70010369 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 997 180 0 0 0 chr9 54065880 54065900 -70010272 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 997 219 36 0 0 chr9 54067495 54067523 -70008649 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 997 566 322 112 30 chr9 54068480 54068951 -70007221 - L1M5 LINE L1 -366 5813 5304 1 997 337 262 15 96 chr9 54070591 54070726 -70005446 + MT2B LTR ERVL 153 276 -325 1 997 844 146 0 8 chr9 54070619 54070750 -70005422 + B1_Mur1 SINE Alu 15 144 -5 1 997 226 235 75 102 chr9 54070625 54070772 -70005400 - YREP_Mm Unknown Unknown -1516 296 154 1 997 252 0 0 0 chr9 54071238 54071266 -70004906 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 997 612 239 29 36 chr9 54071428 54071567 -70004605 - B1F2 SINE Alu -1 148 11 1 997 371 336 19 44 chr9 54071567 54071587 -70004585 - ID_B1 SINE B4 0 224 70 1 997 341 246 0 0 chr9 54071807 54071872 -70004300 + L2c LINE L2 3288 3352 -35 1 997 201 220 20 20 chr9 54072683 54072734 -70003438 + MIRc SINE MIR 9 59 -209 1 997 375 333 103 15 chr9 54074269 54074464 -70001708 + MIRb SINE MIR 33 244 -24 1 997 443 250 16 49 chr9 54076016 54076138 -70000034 - L1MEg LINE L1 -4097 1987 1870 1 997 273 198 35 0 chr9 54077299 54077385 -69998787 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 997 624 182 49 49 chr9 54077767 54077911 -69998261 + B1_Mur1 SINE Alu 1 144 -5 1 997 306 0 0 0 chr9 54078445 54078479 -69997693 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 997 284 157 0 0 chr9 54081973 54082024 -69994148 + Lx8 LINE L1 7415 7465 -8 1 997 280 268 0 0 chr9 54083260 54083316 -69992856 + L2c LINE L2 3285 3340 -47 1 997 2293 205 19 85 chr9 54083448 54083987 -69992185 - Lx5 LINE L1 0 7050 6548 1 997 408 55 0 0 chr9 54084699 54084754 -69991418 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 997 416 104 15 0 chr9 54084897 54084964 -69991208 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 1 997 332 93 0 0 chr9 54085852 54085895 -69990277 + MIR SINE MIR 218 260 -2 1 997 1455 193 69 76 chr9 54086140 54086572 -69989600 + RMER10A LTR ERVL 14 442 0 1 997 258 41 92 40 chr9 54087310 54087386 -69988786 + T-rich Low_complexity Low_complexity 2 81 0 1 997 205 156 0 0 chr9 54088111 54088143 -69988029 + GA-rich Low_complexity Low_complexity 3 34 0 1 997 225 211 57 19 chr9 54088848 54088901 -69987271 + MER91A DNA Tip100 142 196 0 1 997 322 222 41 107 chr9 54090940 54091061 -69985111 + Charlie18a DNA MER1_type 100 212 -130 1 997 228 236 56 3 chr9 54092201 54092264 -69983908 - L2c LINE L2 -233 3154 3087 1 997 198 103 0 0 chr9 54092896 54092925 -69983247 + (A)n Simple_repeat Simple_repeat 1 29 0 1 997 208 205 0 0 chr9 54092925 54092964 -69983208 + MIR3 SINE MIR 153 191 -17 1 997 180 0 0 0 chr9 54095142 54095162 -69981010 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 997 672 135 0 0 chr9 54095584 54095695 -69980477 + (TCC)n Simple_repeat Simple_repeat 2 112 0 1 997 657 213 39 92 chr9 54096213 54096420 -69979752 + B3A SINE B2 2 197 -1 1 997 234 242 81 0 chr9 54097360 54097422 -69978750 + L2a LINE L2 3300 3366 -60 1 997 329 162 119 92 chr9 54097737 54097766 -69978406 + MT2B2 LTR ERVL 124 155 -429 1 997 668 141 148 0 chr9 54097766 54097894 -69978278 + B1_Mur3 SINE Alu 1 147 -2 1 997 404 136 52 15 chr9 54098618 54098700 -69977472 + MTEa LTR MaLR 295 419 -2 1 997 767 195 84 19 chr9 54098719 54098887 -69977285 + B3 SINE B2 47 210 -6 1 997 904 244 5 5 chr9 54098887 54099097 -69977075 + B3 SINE B2 4 213 -3 1 997 629 201 68 27 chr9 54099124 54099272 -69976900 + B3A SINE B2 8 161 -37 1 997 324 0 0 0 chr9 54099280 54099316 -69976856 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 997 342 188 14 28 chr9 54099436 54099507 -69976665 + B3A SINE B2 8 77 -121 1 997 816 226 69 0 chr9 54100380 54100539 -69975633 + B3 SINE B2 9 178 -38 1 997 414 0 0 0 chr9 54100539 54100585 -69975587 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 997 576 274 114 22 chr9 54100884 54101160 -69975012 + MLT1E1 LTR MaLR 74 381 -272 1 997 363 328 101 11 chr9 54101189 54101377 -69974795 + MLT1E1 LTR MaLR 473 677 -3 1 997 251 271 0 28 chr9 54101830 54101902 -69974270 + CT-rich Low_complexity Low_complexity 4 73 0 1 997 226 197 0 120 chr9 54101982 54102023 -69974149 + T-rich Low_complexity Low_complexity 26 66 0 1 997 835 175 35 0 chr9 54102023 54102166 -69974006 - B1_Mur3 SINE Alu 0 149 2 1 997 226 197 0 120 chr9 54102166 54102199 -69973973 + T-rich Low_complexity Low_complexity 1 25 0 1 997 572 273 0 0 chr9 54103580 54103701 -69972471 + B1_Mur1 SINE Alu 24 144 -5 1 997 2055 157 81 20 chr9 54104196 54104593 -69971579 + MTC LTR MaLR 1 421 0 1 997 673 328 73 33 chr9 54105130 54105433 -69970739 + MLT1A0 LTR MaLR 18 332 -33 1 997 748 237 90 30 chr9 54105496 54105669 -69970503 + B3 SINE B2 2 186 -30 1 997 423 0 0 0 chr9 54105669 54105716 -69970456 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 997 748 237 90 30 chr9 54105716 54105742 -69970430 + B3 SINE B2 187 213 -3 1 997 784 254 20 35 chr9 54105790 54105990 -69970182 - B3A SINE B2 0 198 2 1 997 4622 137 43 20 chr9 54106058 54106265 -69969907 + MYSERV16_I-int LTR ERVK 1474 1685 -641 1 997 2455 76 41 0 chr9 54106265 54106579 -69969593 - ORR1A2 LTR MaLR 0 327 1 1 997 10773 134 33 3 chr9 54106579 54108317 -69967855 - ORR1A2-int LTR MaLR 0 1792 2 1 997 2446 90 12 3 chr9 54108318 54108642 -69967530 - ORR1A2 LTR MaLR 0 327 1 1 997 4622 137 43 20 chr9 54108642 54109265 -69966907 + MYSERV16_I-int LTR ERVK 1686 2325 -1 1 997 2973 167 22 37 chr9 54109266 54109882 -69966290 + RLTR20B3 LTR ERVK 1 505 0 1 997 768 257 28 12 chr9 54109913 54110122 -69966050 - B3A SINE B2 -11 205 2 1 997 537 44 0 0 chr9 54110195 54110263 -69965909 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 997 354 303 25 43 chr9 54110404 54110550 -69965622 + PB1D10 SINE Alu 10 148 -1 1 997 282 298 50 0 chr9 54110554 54110675 -69965497 + L1MEf LINE L1 591 717 -5483 1 997 232 289 149 0 chr9 54110693 54110814 -69965358 + L1MEf LINE L1 776 914 -5286 1 997 337 288 0 0 chr9 54110859 54110932 -69965240 + PB1D10 SINE Alu 19 91 -26 1 997 487 234 129 23 chr9 54111018 54111189 -69964983 + L1MEf LINE L1 1037 1225 -4975 1 997 294 258 0 0 chr9 54111322 54111481 -69964691 + (TG)n Simple_repeat Simple_repeat 2 160 0 1 997 183 290 15 75 chr9 54111747 54111814 -69964358 + MIR3 SINE MIR 106 168 -40 1 997 406 186 130 53 chr9 54112997 54113128 -69963044 + B1F SINE Alu 5 145 -4 1 997 221 301 179 29 chr9 54113230 54113370 -69962802 + MIRb SINE MIR 67 227 -41 1 997 184 273 94 66 chr9 54113364 54113470 -69962702 - L4 LINE RTE -637 1392 1284 1 997 217 0 61 0 chr9 54114551 54114584 -69961588 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1 997 333 368 62 20 chr9 54114700 54114944 -69961228 + MLT1J LTR MaLR 107 360 -152 1 997 2660 180 45 6 chr9 54116108 54116595 -69959577 + RLTR18B LTR ERVK 1 506 -6 1 997 367 167 82 12 chr9 54118147 54118232 -69957940 - RMER4B LTR ERVK -1 584 494 1 997 3459 184 83 23 chr9 54118243 54118992 -69957180 - RMER21A LTR ERV1 0 947 1 1 997 1078 185 201 20 chr9 54119016 54119320 -69956852 - RMER4B LTR ERVK -147 438 80 1 997 375 227 13 0 chr9 54119321 54119396 -69956776 - MurERV4-int LTR ERVK -737 4523 4448 1 997 342 341 96 0 chr9 54119453 54119588 -69956584 + ID_B1 SINE B4 77 224 0 1 997 4343 47 9 4 chr9 54120222 54120753 -69955419 - L1Md_F2 LINE L1 -2 6580 6047 1 997 261 57 0 0 chr9 54121409 54121444 -69954728 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 997 254 300 44 71 chr9 54121444 54121670 -69954502 + RMER17C LTR ERVK 112 331 -79 1 997 321 300 0 0 chr9 54122304 54122384 -69953788 + ID_B1 SINE B4 82 161 -63 1 997 316 250 98 0 chr9 54122384 54122396 -69953776 + B1F SINE Alu 1 101 -48 1 997 279 358 41 24 chr9 54123125 54123248 -69952924 - L2 LINE L2 -475 2944 2820 1 997 575 227 14 41 chr9 54123678 54123825 -69952347 - B1F2 SINE Alu 0 149 7 1 997 341 248 16 81 chr9 54124406 54124529 -69951643 - PB1D10 SINE Alu 0 117 3 1 997 320 309 44 26 chr9 54124559 54124672 -69951500 - HAL1 LINE L1 -973 1534 1420 1 997 414 139 0 0 chr9 54125369 54125441 -69950731 + (GGA)n Simple_repeat Simple_repeat 2 73 0 1 997 4640 246 94 31 chr9 54125441 54126812 -69949360 + Lx8 LINE L1 5956 7412 -61 1 997 603 294 7 7 chr9 54126904 54127048 -69949124 - RSINE1 SINE B4 -20 145 2 1 997 384 309 97 60 chr9 54127298 54127432 -69948740 + RSINE1 SINE B4 3 141 -24 1 997 180 77 0 0 chr9 54127432 54127458 -69948714 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 1 997 429 235 48 10 chr9 54127733 54127836 -69948336 + RSINE1 SINE B4 1 107 -58 1 997 269 312 24 24 chr9 54128748 54128830 -69947342 + ID4_ SINE ID 2 83 0 1 997 450 241 59 25 chr9 54129004 54129019 -69947153 - B3 SINE B2 -10 206 189 1 997 297 0 0 0 chr9 54129019 54129052 -69947120 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 997 450 241 59 25 chr9 54129052 54129155 -69947017 - B3 SINE B2 -28 188 84 1 997 555 252 38 0 chr9 54129687 54129818 -69946354 - B1F SINE Alu -8 141 6 1 997 376 205 26 0 chr9 54129812 54129890 -69946282 + PB1D10 SINE Alu 18 97 -20 1 997 646 242 30 0 chr9 54129912 54130044 -69946128 + ID_B1 SINE B4 82 217 -7 2 997 673 263 7 0 chr9 54130825 54130962 -69945210 + RSINE1 SINE B4 24 161 -4 2 997 288 70 0 0 chr9 54130963 54131006 -69945166 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 2 997 230 81 27 0 chr9 54131034 54131071 -69945101 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 2 997 205 285 46 145 chr9 54131979 54132048 -69944124 + MIRm SINE MIR 137 273 -3 2 997 389 265 0 0 chr9 54132048 54132131 -69944041 + L2b LINE L2 3288 3370 -5 2 998 251 278 25 85 chr9 54132912 54133030 -69943142 - PB1D9 SINE Alu -8 112 2 2 998 894 203 85 15 chr9 54133164 54133364 -69942808 + B3 SINE B2 1 214 -2 2 998 370 221 104 0 chr9 54133378 54133455 -69942717 + PB1D10 SINE Alu 18 102 -15 2 998 286 217 16 16 chr9 54133454 54133515 -69942657 + ID4 SINE ID 12 72 -11 2 998 603 74 0 0 chr9 54135375 54135456 -69940716 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 2 998 500 217 86 17 chr9 54135458 54135575 -69940597 - ID_B1 SINE B4 -14 210 86 2 998 261 0 0 0 chr9 54135742 54135771 -69940401 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 2 998 505 253 60 36 chr9 54136607 54136633 -69939539 + CYRA11_Mm Unknown Y-chromosome 145 174 -443 2 998 992 83 34 14 chr9 54136633 54136779 -69939393 - URR1A DNA MER1_type 0 226 78 2 998 267 330 66 0 chr9 54136818 54136909 -69939263 - MER5A1 DNA MER1_type -69 97 1 2 998 216 344 42 31 chr9 54136920 54137016 -69939156 - MER5B DNA MER1_type -27 151 55 2 998 201 74 0 0 chr9 54137145 54137172 -69939000 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 2 998 551 204 113 44 chr9 54138400 54138580 -69937592 - B3 SINE B2 -5 190 20 2 998 474 204 0 31 chr9 54138585 54138681 -69937491 - B1_Mur3 SINE Alu -52 97 5 2 998 292 288 0 0 chr9 54138618 54138691 -69937481 - B4 SINE B4 -140 152 80 2 998 917 164 120 5 chr9 54138703 54138887 -69937285 - B3 SINE B2 -6 210 6 2 998 36579 5 5 0 chr9 54138937 54143686 -69932486 - L1Md_A LINE L1 0 6582 1809 2 998 283 223 137 11 chr9 54144099 54144194 -69931978 - Lx8 LINE L1 -339 7134 7028 2 998 1068 205 84 149 chr9 54144194 54144658 -69931514 + RMER10A LTR ERVL 4 437 -5 2 998 1837 277 186 38 chr9 54144680 54144875 -69931297 - Lx8 LINE L1 -443 7030 6851 2 998 735 243 113 0 chr9 54144875 54145060 -69931112 + B3 SINE B2 1 206 -10 2 998 1837 277 186 38 chr9 54145060 54145648 -69930524 - Lx8 LINE L1 -623 6850 6131 2 998 922 201 116 0 chr9 54145789 54145978 -69930194 - B3 SINE B2 -5 211 1 2 998 345 348 43 33 chr9 54146014 54146290 -69929882 + L1MC LINE L1 5474 5752 -2130 2 998 260 263 37 42 chr9 54146628 54146742 -69929430 - MLT1A LTR MaLR -2 406 241 2 998 343 312 49 61 chr9 54146777 54146941 -69929231 - MLT1A LTR MaLR -194 180 19 2 998 329 326 132 21 chr9 54146949 54147093 -69929079 - Charlie8 DNA MER1_type -2187 241 82 2 998 958 101 5 27 chr9 54147125 54147309 -69928863 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 2 998 241 327 36 90 chr9 54147582 54147601 -69928571 - B3 SINE B2 -6 210 190 2 998 243 0 0 0 chr9 54147601 54147628 -69928544 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 2 998 241 327 36 90 chr9 54147628 54147719 -69928453 - B3 SINE B2 -27 189 106 2 998 441 0 0 0 chr9 54148481 54148530 -69927642 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 998 394 264 44 0 chr9 54148668 54148759 -69927413 - B4A SINE B4 -196 96 2 2 998 483 291 44 7 chr9 54148762 54148897 -69927275 - ID_B1 SINE B4 -3 221 82 2 998 457 276 10 0 chr9 54148946 54149044 -69927128 + MER2 DNA MER2_type 192 290 -55 2 998 303 211 227 24 chr9 54149691 54149855 -69926317 + MIRc SINE MIR 20 223 -39 2 998 316 247 0 58 chr9 54149893 54149979 -69926193 + ID4_ SINE ID 2 82 -1 2 998 607 265 6 32 chr9 54149994 54150150 -69926022 - MLT1A0 LTR MaLR 0 365 214 2 998 519 255 25 54 chr9 54150286 54150444 -69925728 - RMER20B LTR ERVK -355 161 1 2 998 781 185 14 14 chr9 54150494 54150642 -69925530 + B1_Mur2 SINE Alu 2 149 0 2 998 374 183 28 0 chr9 54150985 54151056 -69925116 + ID4_ SINE ID 2 74 -9 2 998 219 69 0 0 chr9 54151061 54151090 -69925082 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 998 243 293 40 20 chr9 54152632 54152733 -69923439 - L2 LINE L2 -658 2761 2659 2 998 1576 81 18 9 chr9 54153231 54153454 -69922718 + URR1A DNA MER1_type 2 226 0 2 998 1493 39 17 11 chr9 54153874 54154054 -69922118 - B2_Mm2 SINE B2 -14 181 1 2 998 245 285 149 28 chr9 54154623 54154764 -69921408 - MER95 LTR ERV -13 418 261 2 998 293 379 8 16 chr9 54154744 54154870 -69921302 + RMER12 LTR ERVK 732 856 -466 2 998 291 54 0 0 chr9 54154871 54154908 -69921264 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 998 232 239 69 14 chr9 54154933 54155005 -69921167 - PB1D10 SINE Alu -41 76 1 2 998 448 297 87 28 chr9 54155007 54155225 -69920947 - MER95 LTR ERV -199 232 2 2 998 520 237 51 0 chr9 54155601 54155719 -69920453 - ID_B1 SINE B4 -100 124 1 2 998 247 171 96 41 chr9 54155679 54155752 -69920420 - ZP3AR Satellite Satellite -131 81 5 2 998 953 259 55 8 chr9 54157162 54157400 -69918772 - MER2 DNA MER2_type -7 338 90 2 998 327 25 0 0 chr9 54157565 54157605 -69918567 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 998 518 243 106 63 chr9 54157724 54157913 -69918259 - B3A SINE B2 0 198 2 2 998 272 338 12 0 chr9 54158614 54158694 -69917478 - ID2 SINE ID -1 82 2 2 998 3280 48 2 8 chr9 54158723 54159119 -69917053 + MTA_Mm LTR MaLR 3 396 0 2 998 5522 79 56 87 chr9 54159119 54160036 -69916136 + MTA_Mm-int LTR MaLR 1 888 -210 2 998 593 27 14 0 chr9 54160028 54160101 -69916071 + MTB LTR MaLR 327 400 0 2 998 521 221 24 32 chr9 54160101 54160225 -69915947 - B1F SINE Alu -26 123 1 2 998 227 279 0 14 chr9 54160164 54160233 -69915939 - B4A SINE B4 -147 145 78 2 998 180 0 0 0 chr9 54160238 54160258 -69915914 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 2 998 1125 213 63 50 chr9 54160262 54160564 -69915608 - Lx9 LINE L1 -16 7628 7323 2 998 360 254 36 65 chr9 54161252 54161391 -69914781 - RSINE1 SINE B4 -19 146 12 2 998 381 278 2 43 chr9 54161621 54161733 -69914439 - PB1D10 SINE Alu 0 120 14 2 998 747 187 22 0 chr9 54164454 54164588 -69911584 - B1_Mur4 SINE Alu 0 150 14 2 998 3357 215 100 42 chr9 54164588 54165500 -69910672 - Lx7 LINE L1 -6 7690 6726 2 998 4195 189 80 22 chr9 54165503 54166653 -69909519 - L1_Mur3 LINE L1 -224 5656 4333 2 998 321 315 64 55 chr9 54170331 54170566 -69905606 - LTR29 LTR ERV1 -256 366 130 2 998 242 311 19 46 chr9 54170598 54170706 -69905466 - LTR48 LTR ERV1 -682 105 1 2 998 716 260 215 23 chr9 54171757 54172018 -69904154 - ORR1D2 LTR MaLR -43 331 21 2 998 643 256 97 32 chr9 54172015 54172201 -69903971 - ID_B1 SINE B4 -24 200 3 2 998 405 0 0 0 chr9 54173012 54173057 -69903115 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 998 440 258 123 0 chr9 54173234 54173389 -69902783 + MIR SINE MIR 82 255 -7 2 998 809 276 23 32 chr9 54173409 54173626 -69902546 - ID_B1 SINE B4 -4 220 6 2 998 256 222 0 18 chr9 54173732 54173787 -69902385 - B1F1 SINE Alu -94 55 2 2 998 207 0 0 0 chr9 54173787 54173810 -69902362 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 998 225 259 0 0 chr9 54173819 54173873 -69902299 + B4A SINE B4 216 269 -23 2 998 438 20 0 0 chr9 54174067 54174118 -69902054 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 998 505 224 0 0 chr9 54174124 54174222 -69901950 + ID_B1 SINE B4 127 224 0 2 998 273 330 92 33 chr9 54174223 54174527 -69901645 - L1MA6 LINE L1 -118 6182 5861 2 998 427 265 25 75 chr9 54175234 54175393 -69900779 + B4A SINE B4 82 232 -60 2 998 401 258 11 0 chr9 54175414 54175507 -69900665 + RSINE1 SINE B4 43 136 -29 2 998 987 134 6 11 chr9 54175535 54175716 -69900456 + CT-rich Low_complexity Low_complexity 1 180 0 2 998 351 188 0 0 chr9 54175716 54175778 -69900394 + T-rich Low_complexity Low_complexity 20 81 0 2 998 536 254 49 7 chr9 54175778 54175921 -69900251 - B1_Mur1 SINE Alu 0 149 1 2 998 351 188 0 0 chr9 54175921 54175938 -69900234 + T-rich Low_complexity Low_complexity 3 19 0 2 998 353 237 0 0 chr9 54175947 54176023 -69900149 + B4A SINE B4 216 291 -1 2 998 685 90 38 13 chr9 54176032 54176189 -69899983 + (CA)n Simple_repeat Simple_repeat 2 162 0 2 998 751 154 81 0 chr9 54177228 54177364 -69898808 + B1_Mur3 SINE Alu 2 148 -1 2 998 181 385 0 0 chr9 54177417 54177482 -69898690 + L3 LINE CR1 4422 4486 -3 2 998 376 259 56 0 chr9 54177488 54177596 -69898576 - URR1B DNA MER1_type 0 225 112 2 998 508 62 0 0 chr9 54177596 54177661 -69898511 + L1_Mur2 LINE L1 5558 5622 -255 2 998 562 202 9 17 chr9 54177661 54177777 -69898395 - URR1B DNA MER1_type -108 117 3 2 998 210 309 125 18 chr9 54177842 54177954 -69898218 + ID_B1 SINE B4 20 143 -81 2 998 289 153 63 89 chr9 54177934 54178013 -69898159 + PB1D9 SINE Alu 43 119 -1 2 998 710 300 107 15 chr9 54178415 54178808 -69897364 - L1MD LINE L1 -1886 4260 3832 2 998 474 250 58 12 chr9 54179126 54179276 -69896896 - MTE2b LTR MaLR -3 376 227 2 998 533 263 14 21 chr9 54179956 54180096 -69896076 - ID_B1 SINE B4 -2 222 84 2 998 259 303 26 0 chr9 54180437 54180513 -69895659 + ID4_ SINE ID 1 78 -5 2 998 206 284 30 0 chr9 54180534 54180601 -69895571 + GA-rich Low_complexity Low_complexity 2 70 0 2 998 181 269 182 22 chr9 54181668 54181805 -69894367 - MIRb SINE MIR -10 258 100 2 998 244 266 38 0 chr9 54182314 54182393 -69893779 + ID4_ SINE ID 2 83 0 3 998 266 0 29 0 chr9 54185012 54185046 -69891126 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 998 1962 84 44 0 chr9 54185046 54185319 -69890853 - Lx LINE L1 -15 6639 6355 3 998 524 248 65 7 chr9 54185415 54185553 -69890619 + ID_B1 SINE B4 44 189 -35 3 998 696 238 59 35 chr9 54185810 54186097 -69890075 - RLTR15 LTR ERVK -65 294 1 3 998 383 119 0 15 chr9 54188529 54188597 -69887575 + (TTTTC)n Simple_repeat Simple_repeat 5 71 0 3 998 255 244 126 11 chr9 54188597 54188684 -69887488 - PB1D10 SINE Alu 0 117 21 3 998 288 0 0 0 chr9 54188782 54188814 -69887358 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 3 998 279 0 0 0 chr9 54189639 54189670 -69886502 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 998 669 240 83 26 chr9 54189796 54190158 -69886014 - MTD LTR MaLR 0 419 1 3 998 2072 189 73 8 chr9 54190322 54190717 -69885455 + MTC LTR MaLR 1 421 0 3 998 383 284 0 8 chr9 54191268 54191513 -69884659 + (TG)n Simple_repeat Simple_repeat 1 242 0 3 998 449 231 221 13 chr9 54191521 54191670 -69884502 - B3A SINE B2 -17 181 2 3 998 327 256 61 0 chr9 54192037 54192119 -69884053 - B1F SINE Alu -8 141 55 3 998 3083 209 193 19 chr9 54192119 54192958 -69883214 - RMER1B Other Other -39 1027 43 3 998 3176 54 26 0 chr9 54193393 54193782 -69882390 + MTB LTR MaLR 1 399 -1 3 998 4180 178 70 42 chr9 54193795 54194759 -69881413 - MYSERV6-int LTR ERVK -17 8942 7951 3 998 1379 95 16 0 chr9 54194762 54194951 -69881221 + B2_Mm2 SINE B2 2 193 -2 3 998 231 262 46 118 chr9 54195337 54195462 -69880710 + MER53 DNA hAT 11 126 -67 3 998 839 195 0 7 chr9 54195462 54195612 -69880560 + B1_Mur2 SINE Alu 1 149 0 3 998 231 262 46 118 chr9 54195612 54195681 -69880491 + MER53 DNA hAT 127 191 -2 3 998 723 269 57 5 chr9 54196137 54196331 -69879841 - ID_B1 SINE B4 -1 223 20 3 998 494 198 0 17 chr9 54196347 54196465 -69879707 + (TATATG)n Simple_repeat Simple_repeat 3 118 0 3 998 633 151 0 0 chr9 54196464 54196583 -69879589 + GA-rich Low_complexity Low_complexity 2 120 0 3 998 3075 88 0 12 chr9 54196658 54197070 -69879102 + MTB_Mm LTR MaLR 1 407 0 3 998 5321 138 45 63 chr9 54197072 54198182 -69877990 + MTB_Mm-int LTR MaLR 2 1091 -7 3 998 2568 96 7 29 chr9 54198188 54198597 -69877575 + MTB_Mm LTR MaLR 1 400 -7 3 998 286 218 92 53 chr9 54198639 54198770 -69877402 - Lx9 LINE L1 -19 7625 7490 3 998 489 192 97 36 chr9 54198770 54198939 -69877233 + RMER4B LTR ERVK 439 588 -23 3 998 2234 85 0 15 chr9 54199050 54199374 -69876798 + ORR1A2 LTR MaLR 1 319 -8 3 998 2113 240 93 35 chr9 54199382 54200033 -69876139 - Lx9 LINE L1 -639 7005 6170 3 998 351 0 0 0 chr9 54200033 54200072 -69876100 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 998 4898 249 94 52 chr9 54200072 54201161 -69875011 - Lx9 LINE L1 -1304 6169 4985 3 998 1825 141 26 19 chr9 54201161 54201473 -69874699 - Lx4B LINE L1 -3 7055 6742 3 998 4898 222 79 49 chr9 54201473 54202259 -69873913 - Lx9 LINE L1 -863 4984 4199 3 998 549 44 0 0 chr9 54202286 54202354 -69873818 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 998 2428 237 133 45 chr9 54202354 54203390 -69872782 - Lx9 LINE L1 -2040 3807 2679 3 998 272 211 13 0 chr9 54203390 54203466 -69872706 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 998 331 298 131 16 chr9 54203515 54203767 -69872405 + L1_Rod LINE L1 1862 2142 -3705 3 998 1160 192 181 25 chr9 54203763 54204116 -69872056 - Lx9 LINE L1 -4039 1808 1401 3 998 369 144 100 100 chr9 54204116 54204216 -69871956 + ORR1D1 LTR MaLR 1 135 -239 3 998 801 247 133 10 chr9 54204216 54204482 -69871690 - Lx9 LINE L1 -6357 1251 958 3 998 285 100 0 0 chr9 54204482 54204532 -69871640 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 998 801 247 133 10 chr9 54204532 54204559 -69871613 - Lx9 LINE L1 -6651 957 922 3 998 39354 6 0 1 chr9 54204871 54210640 -69865532 + L1Md_A LINE L1 1 5586 -297 3 998 9226 2 0 0 chr9 54210640 54211636 -69864536 + L1Md_A LINE L1 5587 6582 0 3 998 240 35 0 0 chr9 54211737 54211766 -69864406 + (A)n Simple_repeat Simple_repeat 1 29 0 3 998 245 171 214 0 chr9 54211959 54212029 -69864143 + MTD LTR MaLR 46 130 -289 3 998 469 166 202 1 chr9 54212089 54212218 -69863954 + MTD LTR MaLR 240 405 -14 3 998 1234 14 0 0 chr9 54212426 54212572 -69863600 - L1Md_A LINE L1 0 6582 6437 3 998 326 23 0 23 chr9 54214648 54214692 -69861480 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 998 267 184 41 0 chr9 54215050 54215099 -69861073 - ID4_ SINE ID -32 51 1 3 998 245 332 69 80 chr9 54215817 54216079 -69860093 + ORR1E LTR MaLR 89 347 -12 3 998 1157 68 0 13 chr9 54216318 54216468 -69859704 - B1_Mus1 SINE Alu 0 148 1 3 998 272 195 103 13 chr9 54217887 54217965 -69858207 - PB1D10 SINE Alu -1 116 32 3 998 632 203 55 48 chr9 54219191 54219336 -69856836 + B1_Mur1 SINE Alu 3 148 -1 3 998 737 230 0 13 chr9 54219361 54219511 -69856661 + B1_Mus1 SINE Alu 1 148 0 3 998 373 321 18 0 chr9 54219586 54219695 -69856477 + PB1 SINE Alu 14 124 -3 3 998 7958 63 12 3 chr9 54219959 54220977 -69855195 + L1_Mus2 LINE L1 5569 6566 0 3 998 353 303 51 26 chr9 54221463 54221631 -69854541 + B3 SINE B2 47 212 -4 3 998 21 36 0 0 chr9 54222162 54222190 -69853982 + AT_rich Low_complexity Low_complexity 1 28 0 3 998 297 0 0 0 chr9 54222704 54222737 -69853435 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 998 26 30 0 0 chr9 54224333 54224366 -69851806 + AT_rich Low_complexity Low_complexity 1 33 0 3 998 231 114 0 0 chr9 54224781 54224816 -69851356 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 998 569 217 126 50 chr9 54224987 54225249 -69850923 - B4A SINE B4 -8 284 3 3 998 364 261 44 26 chr9 54225253 54225367 -69850805 - PB1D10 SINE Alu -1 116 1 3 998 266 300 118 37 chr9 54225484 54225619 -69850553 + B1F1 SINE Alu 4 149 0 3 998 794 184 20 0 chr9 54226336 54226483 -69849689 - B1_Mur4 SINE Alu 0 150 1 3 998 228 224 0 0 chr9 54227095 54227153 -69849019 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 998 222 37 0 0 chr9 54227411 54227438 -69848734 + (CAGAG)n Simple_repeat Simple_repeat 1 27 0 3 998 444 293 111 8 chr9 54227998 54228233 -69847939 - B4A SINE B4 -18 274 9 3 998 1285 81 21 26 chr9 54229957 54230147 -69846025 - B2_Mm2 SINE B2 -4 191 3 3 998 402 329 49 28 chr9 54230688 54230703 -69845469 + B4 SINE B4 77 94 -198 3 998 629 250 81 0 chr9 54230703 54230839 -69845333 + B1_Mm SINE Alu 3 149 0 3 998 690 190 74 8 chr9 54231150 54231272 -69844900 + B1_Mur1 SINE Alu 7 136 -13 3 998 287 313 102 25 chr9 54231274 54231392 -69844780 - B1_Mur3 SINE Alu -21 128 2 3 998 200 265 43 14 chr9 54232482 54232551 -69843621 + GA-rich Low_complexity Low_complexity 3 73 0 3 998 21 0 0 0 chr9 54232824 54232845 -69843327 + AT_rich Low_complexity Low_complexity 1 21 0 3 998 705 301 10 25 chr9 54233061 54233262 -69842910 + B3 SINE B2 7 204 -12 3 998 277 274 45 56 chr9 54233342 54233431 -69842741 - B1F1 SINE Alu -61 88 1 3 998 256 162 97 56 chr9 54233505 54233577 -69842595 + PB1 SINE Alu 48 122 -5 3 998 593 200 101 29 chr9 54233782 54233921 -69842251 - B1_Mur1 SINE Alu 0 149 1 3 998 333 289 24 0 chr9 54234285 54234368 -69841804 - MER5A DNA MER1_type -103 86 2 3 998 767 144 43 7 chr9 54234479 54234619 -69841553 + B1_Mur2 SINE Alu 5 149 0 3 998 475 264 94 41 chr9 54235600 54235770 -69840402 + B3A SINE B2 4 182 -16 3 998 285 128 0 0 chr9 54235771 54235818 -69840354 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 998 724 135 24 140 chr9 54235906 54236070 -69840102 + B1_Mur2 SINE Alu 5 149 0 3 998 22 70 0 0 chr9 54236413 54236456 -69839716 + AT_rich Low_complexity Low_complexity 1 43 0 3 998 391 267 376 0 chr9 54236566 54236831 -69839341 - L1MB5 LINE L1 -1 6173 5810 3 998 251 291 30 132 chr9 54236922 54237051 -69839121 - Lx8 LINE L1 -11 7462 7351 3 998 765 175 42 7 chr9 54237051 54237195 -69838977 - B1_Mur1 SINE Alu 0 149 1 3 998 251 291 30 132 chr9 54237195 54237299 -69838873 - Lx8 LINE L1 -123 7350 7254 3 998 456 301 104 23 chr9 54237305 54237526 -69838646 + L2 LINE L2 2721 2959 -460 3 998 11591 81 7 0 chr9 54237541 54239870 -69836302 - L1_Mus1 LINE L1 0 6567 4222 3 998 213 238 191 0 chr9 54240218 54240230 -69835942 + ID2 SINE ID 1 75 -8 3 998 225 255 20 0 chr9 54240230 54240281 -69835891 + ID SINE ID 25 76 -148 3 998 231 61 0 0 chr9 54240558 54240591 -69835581 + (A)n Simple_repeat Simple_repeat 1 33 0 3 998 852 128 0 32 chr9 54240658 54240843 -69835329 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 998 1115 67 0 0 chr9 54241209 54241344 -69834828 + B1_Mus2 SINE Alu 1 135 -12 3 998 183 42 0 0 chr9 54241345 54241369 -69834803 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 998 416 277 178 25 chr9 54241881 54241926 -69834246 + L1MC4 LINE L1 7094 7136 -906 3 998 1798 142 100 26 chr9 54241926 54242267 -69833905 + ORR1B2 LTR MaLR 1 366 -1 3 998 416 277 178 25 chr9 54242267 54242576 -69833596 + L1MC4 LINE L1 7137 7502 -540 3 998 276 303 22 11 chr9 54242814 54242904 -69833268 + GA-rich Low_complexity Low_complexity 2 92 0 3 998 354 247 140 30 chr9 54243191 54243291 -69832881 + PB1D10 SINE Alu 1 111 -6 3 998 990 165 109 22 chr9 54243303 54243532 -69832640 - ORR1C2 LTR MaLR -2 382 134 3 998 396 0 0 0 chr9 54243718 54243762 -69832410 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 998 533 340 43 0 chr9 54243779 54243920 -69832252 + RSINE1 SINE B4 1 147 -18 3 998 255 224 31 108 chr9 54245161 54245226 -69830946 + AluG_3 SINE Alu 155 214 -97 3 998 326 232 146 10 chr9 54245175 54245271 -69830901 + ID_B1 SINE B4 109 217 -7 3 998 207 161 0 51 chr9 54246584 54246626 -69829546 + T-rich Low_complexity Low_complexity 19 59 0 3 998 894 48 177 0 chr9 54246626 54246750 -69829422 - B1_Mus2 SINE Alu 0 147 2 3 998 207 161 0 51 chr9 54246750 54246766 -69829406 + T-rich Low_complexity Low_complexity 4 18 0 3 998 762 166 13 27 chr9 54247420 54247569 -69828603 + B1_Mur2 SINE Alu 2 148 -1 3 998 239 320 51 0 chr9 54248067 54248145 -69828027 - L2b LINE L2 -1 3374 3293 4 998 1563 202 121 8 chr9 54248177 54248541 -69827631 + MTD LTR MaLR 1 405 -14 4 998 2036 61 7 28 chr9 54249907 54250195 -69825977 + Lx LINE L1 6370 6651 -3 4 998 246 269 0 0 chr9 54250442 54250509 -69825663 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 998 346 67 0 0 chr9 54250510 54250555 -69825617 + HAL1-3A_ME LINE L1 1976 2020 -838 4 998 603 40 0 0 chr9 54250582 54250656 -69825516 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 998 320 271 104 56 chr9 54251233 54251464 -69824708 + L1MC5 LINE L1 6720 6961 -1000 4 998 560 250 110 0 chr9 54251549 54251713 -69824459 - Lx8 LINE L1 -141 7332 7151 4 998 195 217 30 6 chr9 54252097 54252164 -69824008 - MIRc SINE MIR -36 172 102 4 998 25 0 0 0 chr9 54252762 54252787 -69823385 + AT_rich Low_complexity Low_complexity 1 25 0 4 998 216 0 0 0 chr9 54252923 54252947 -69823225 + (AGTAG)n Simple_repeat Simple_repeat 2 25 0 4 998 22 0 0 0 chr9 54253003 54253025 -69823147 + AT_rich Low_complexity Low_complexity 1 22 0 4 998 391 236 34 0 chr9 54253028 54253117 -69823055 - PB1D7 SINE Alu -5 115 24 4 998 786 225 43 16 chr9 54253848 54254033 -69822139 + B3 SINE B2 2 191 -25 4 998 207 327 155 17 chr9 54254678 54254852 -69821320 - MIRb SINE MIR -18 250 53 4 998 554 266 0 0 chr9 54254995 54255108 -69821064 - B1F SINE Alu -18 131 19 4 998 380 336 0 26 chr9 54255005 54255121 -69821051 - ID_B1 SINE B4 -25 199 87 4 998 337 322 58 25 chr9 54255130 54255251 -69820921 - B1F SINE Alu -7 142 18 4 998 750 201 0 7 chr9 54255324 54255469 -69820703 + B1_Mus2 SINE Alu 3 146 -1 4 998 279 0 0 0 chr9 54255745 54255776 -69820396 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 998 741 41 0 0 chr9 54255797 54255894 -69820278 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 4 998 3100 49 13 8 chr9 54255959 54256353 -69819819 + MTA_Mm LTR MaLR 1 396 0 4 998 1472 220 62 24 chr9 54256387 54256810 -69819362 + Lx9 LINE L1 7121 7559 -85 4 998 264 30 0 0 chr9 54256858 54256891 -69819281 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 998 432 0 0 0 chr9 54256891 54256938 -69819234 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 998 481 186 190 2 chr9 54257383 54257493 -69818679 + ID_B1 SINE B4 83 207 -17 4 998 347 275 25 76 chr9 54257392 54257510 -69818662 + PB1D10 SINE Alu 6 117 0 4 998 201 363 0 11 chr9 54257806 54257898 -69818274 + GA-rich Low_complexity Low_complexity 4 94 0 4 998 377 272 52 23 chr9 54258265 54258389 -69817783 + B1F SINE Alu 2 120 0 4 998 22 0 0 0 chr9 54258477 54258499 -69817673 + AT_rich Low_complexity Low_complexity 1 22 0 4 998 394 245 10 0 chr9 54258922 54259020 -69817152 + PB1D7 SINE Alu 7 105 -15 4 998 1678 191 51 23 chr9 54259832 54260186 -69815986 + ORR1D1 LTR MaLR 11 374 0 4 998 183 256 0 0 chr9 54260820 54260859 -69815313 - L2 LINE L2 -493 2926 2888 4 998 244 203 15 119 chr9 54260893 54260960 -69815212 + 4.5SRNA scRNA scRNA 29 88 -6 4 998 400 243 67 19 chr9 54260908 54261013 -69815159 + B1_Mur1 SINE Alu 40 149 0 4 998 335 346 70 25 chr9 54261395 54261441 -69814731 - RSINE1 SINE B4 0 165 2 4 998 592 227 9 9 chr9 54261441 54261552 -69814620 - B3A SINE B2 -87 111 1 4 998 209 176 39 0 chr9 54261979 54262030 -69814142 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 998 436 248 132 9 chr9 54262304 54262418 -69813754 + B3A SINE B2 1 128 -70 4 998 1000 130 59 0 chr9 54262471 54262640 -69813532 + B2_Mm1t SINE B2 2 180 -13 4 998 583 71 313 17 chr9 54262713 54262828 -69813344 + B2_Mm2 SINE B2 47 195 0 4 999 413 267 200 27 chr9 54265325 54265475 -69810697 - B3A SINE B2 -22 176 1 4 999 338 250 77 43 chr9 54265521 54265638 -69810534 + ID_B1 SINE B4 104 224 0 4 999 219 88 0 0 chr9 54265669 54265703 -69810469 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 999 735 62 0 0 chr9 54266026 54266123 -69810049 + (TGGA)n Simple_repeat Simple_repeat 4 100 0 4 999 409 279 138 8 chr9 54266448 54266571 -69809601 + RSINE1 SINE B4 7 145 -20 4 999 28 48 0 0 chr9 54266580 54266622 -69809550 + AT_rich Low_complexity Low_complexity 1 42 0 4 999 428 171 129 35 chr9 54266701 54266786 -69809386 + B1F SINE Alu 24 116 -1 4 999 1069 99 0 0 chr9 54266993 54267135 -69809037 + B1_Mus1 SINE Alu 2 143 -5 4 999 891 163 265 0 chr9 54267166 54267411 -69808761 + Lx5 LINE L1 6741 7050 0 4 999 194 299 75 38 chr9 54268079 54268159 -69808013 + MER5A DNA MER1_type 64 146 -43 4 999 24 0 0 0 chr9 54268527 54268551 -69807621 + AT_rich Low_complexity Low_complexity 1 24 0 4 999 257 246 0 0 chr9 54268562 54268619 -69807553 + B1F SINE Alu 87 143 -6 4 999 180 0 0 0 chr9 54269164 54269184 -69806988 + (CAT)n Simple_repeat Simple_repeat 2 21 0 4 999 7234 107 6 10 chr9 54269215 54270956 -69805216 + Lx LINE L1 4918 6654 0 4 999 21 36 0 0 chr9 54271176 54271204 -69804968 + AT_rich Low_complexity Low_complexity 1 28 0 4 999 273 293 70 113 chr9 54271237 54271422 -69804750 + MLT1A LTR MaLR 21 197 -177 4 999 349 268 102 61 chr9 54271641 54271788 -69804384 + RSINE1 SINE B4 2 154 -11 4 999 281 53 17 51 chr9 54271805 54271864 -69804308 + (TAA)n Simple_repeat Simple_repeat 2 58 0 4 999 228 186 23 0 chr9 54271864 54271907 -69804265 + MTC LTR MaLR 378 421 0 4 999 2732 128 63 51 chr9 54271973 54272484 -69803688 + RMER4B LTR ERVK 1 517 -68 4 999 317 167 0 0 chr9 54272487 54272541 -69803631 + L1_Mur2 LINE L1 5291 5344 -533 4 999 1545 107 91 4 chr9 54272548 54272812 -69803360 + L1_Mur2 LINE L1 5467 5753 -124 4 999 4507 128 30 14 chr9 54272812 54273543 -69802629 + Lx4B LINE L1 6308 7050 -8 4 999 260 200 16 62 chr9 54273908 54273972 -69802200 - B3A SINE B2 -134 64 4 4 999 1947 196 45 8 chr9 54276906 54277302 -69798870 + MTD LTR MaLR 1 411 -8 4 999 259 356 128 25 chr9 54277295 54277306 -69798866 + B4A SINE B4 74 98 -194 4 999 484 248 0 28 chr9 54277306 54277414 -69798758 + PB1D10 SINE Alu 4 108 -9 4 999 259 356 128 25 chr9 54277414 54277491 -69798681 + B4A SINE B4 99 289 -3 4 999 408 40 0 0 chr9 54277491 54277541 -69798631 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 999 262 303 128 47 chr9 54277556 54277705 -69798467 - MER5B DNA MER1_type -3 175 15 4 999 357 212 114 44 chr9 54277950 54278108 -69798064 - MER96B DNA hAT -81 336 168 4 999 1085 91 0 0 chr9 54278219 54278362 -69797810 + B1_Mus2 SINE Alu 1 143 -4 4 999 672 13 0 0 chr9 54278363 54278440 -69797732 + (CAAAA)n Simple_repeat Simple_repeat 4 80 0 4 999 842 217 57 0 chr9 54278535 54278710 -69797462 + B3 SINE B2 32 216 0 4 999 2769 181 23 11 chr9 54278857 54279389 -69796783 + Lx7 LINE L1 6362 6899 -797 4 999 987 276 177 40 chr9 54279509 54279702 -69796470 - Lx5 LINE L1 -32 7018 6779 4 999 2854 106 20 25 chr9 54279702 54280146 -69796026 + Lx LINE L1 6213 6654 0 4 999 987 276 177 40 chr9 54280146 54280427 -69795745 - Lx5 LINE L1 -272 6778 6480 4 999 2857 201 87 5 chr9 54280424 54281080 -69795092 - Lx5 LINE L1 -687 6363 5654 4 999 1234 149 52 1 chr9 54281075 54281324 -69794848 + Lx4B LINE L1 6703 6971 -79 4 999 543 206 114 0 chr9 54281864 54281995 -69794177 + Lx4A LINE L1 6913 7058 0 4 999 1827 174 48 14 chr9 54281996 54282432 -69793740 + L1_Mur3 LINE L1 4750 5200 -680 4 999 787 125 15 0 chr9 54282432 54282568 -69793604 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 4 999 468 280 144 18 chr9 54282959 54283181 -69792991 + MLT1D LTR MaLR 118 367 -138 4 999 425 299 0 0 chr9 54283198 54283315 -69792857 + MIR SINE MIR 118 234 -28 4 999 28 0 0 0 chr9 54283889 54283917 -69792255 + AT_rich Low_complexity Low_complexity 1 28 0 4 999 497 223 38 8 chr9 54284106 54284237 -69791935 - B1_Mur2 SINE Alu -10 139 5 4 999 223 283 176 19 chr9 54284678 54284786 -69791386 + L3 LINE CR1 2089 2213 -2276 4 999 357 253 62 34 chr9 54285086 54285262 -69790910 + L1MD LINE L1 2459 2639 -3507 4 999 1409 82 0 35 chr9 54285489 54285691 -69790481 + B2_Mm2 SINE B2 1 195 0 4 999 278 206 79 0 chr9 54285806 54285869 -69790303 + B2_Mm2 SINE B2 1 68 -127 4 999 222 125 0 0 chr9 54285854 54285886 -69790286 + B3 SINE B2 92 123 -93 4 999 1729 243 91 150 chr9 54286041 54286690 -69789482 + Lx5 LINE L1 6244 6832 -218 4 999 3473 166 121 85 chr9 54286690 54287561 -69788611 + RMER19B LTR ERVK 1 902 0 4 999 1729 242 92 152 chr9 54287561 54287767 -69788405 + Lx5 LINE L1 6833 7028 -22 4 999 1231 28 0 0 chr9 54287832 54287977 -69788195 + B1_Mus2 SINE Alu 1 145 -2 4 999 432 184 138 62 chr9 54287987 54288132 -69788040 + L1MD LINE L1 3073 3228 -2918 4 999 333 268 14 0 chr9 54288144 54288215 -69787957 + ID SINE ID 18 89 -135 4 999 708 98 0 0 chr9 54288480 54288582 -69787590 + (GGGA)n Simple_repeat Simple_repeat 4 105 0 4 999 378 309 78 91 chr9 54288781 54289023 -69787149 + RMER2 LTR ERV1 329 567 0 4 999 3125 107 16 84 chr9 54289067 54289629 -69786543 + RMER2 LTR ERV1 1 524 -43 4 999 304 233 93 0 chr9 54289686 54289772 -69786400 + PB1 SINE Alu 32 125 -2 4 999 281 262 15 15 chr9 54289777 54289843 -69786329 + ID4_ SINE ID 2 67 -16 4 999 396 232 116 0 chr9 54289957 54290052 -69786120 + PB1D7 SINE Alu 7 112 -8 4 999 278 297 276 8 chr9 54290158 54290426 -69785746 + L3 LINE CR1 3519 3858 -631 4 999 602 106 21 0 chr9 54290577 54290671 -69785501 + B1_Mur4 SINE Alu 50 145 -5 4 999 197 240 0 13 chr9 54290678 54290754 -69785418 + GA-rich Low_complexity Low_complexity 2 76 0 5 999 567 255 138 43 chr9 54290778 54291032 -69785140 + B4A SINE B4 15 292 0 5 999 242 296 0 58 chr9 54290972 54291058 -69785114 + B3A SINE B2 114 194 -4 5 999 184 318 30 0 chr9 54291329 54291395 -69784777 + L3 LINE CR1 4421 4488 -1 4 999 654 282 7 14 chr9 54291808 54291952 -69784220 - ID_B1 SINE B4 0 224 82 5 999 21 57 0 0 chr9 54291952 54291987 -69784185 + AT_rich Low_complexity Low_complexity 1 35 0 5 999 410 323 107 77 chr9 54292119 54292391 -69783781 - B4A SINE B4 -11 281 2 5 999 527 249 85 41 chr9 54292721 54292859 -69783313 + B3A SINE B2 56 203 -13 5 999 246 125 0 0 chr9 54293031 54293079 -69783093 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 5 999 1020 207 33 9 chr9 54293513 54293723 -69782449 + B3 SINE B2 2 216 0 5 999 24 0 0 0 chr9 54293754 54293778 -69782394 + AT_rich Low_complexity Low_complexity 1 24 0 5 999 255 252 118 2 chr9 54293811 54293920 -69782252 + B1F2 SINE Alu 1 127 -21 5 999 997 108 14 0 chr9 54293976 54294115 -69782057 + B1_Mus1 SINE Alu 3 143 -5 5 999 30 69 0 0 chr9 54294115 54294173 -69781999 + AT_rich Low_complexity Low_complexity 1 58 0 5 999 261 83 0 0 chr9 54294975 54295011 -69781161 + (A)n Simple_repeat Simple_repeat 1 36 0 5 999 557 241 44 15 chr9 54295138 54295273 -69780899 + ID_B1 SINE B4 79 217 -7 5 999 470 141 0 0 chr9 54295581 54295659 -69780513 + L1VL4 LINE L1 111 188 -6114 5 999 4744 97 48 30 chr9 54295790 54296114 -69780058 + L1VL4 LINE L1 196 553 -5749 5 999 560 51 0 0 chr9 54296114 54296193 -69779979 + L1Md_T LINE L1 6504 6582 0 5 999 5567 68 23 18 chr9 54296193 54297347 -69778825 + L1VL4 LINE L1 554 1689 -1870 5 999 7145 96 14 2 chr9 54297350 54298574 -69777598 + L1_Mus4 LINE L1 5394 6634 -2 5 999 30 69 0 0 chr9 54299009 54299067 -69777105 + AT_rich Low_complexity Low_complexity 1 58 0 5 999 628 301 54 25 chr9 54300304 54300583 -69775589 + B4A SINE B4 2 288 -4 5 999 188 257 0 26 chr9 54300586 54300662 -69775510 + (CATA)n Simple_repeat Simple_repeat 2 75 0 5 999 765 260 25 20 chr9 54300785 54300985 -69775187 + B3 SINE B2 16 216 0 5 999 21 0 0 0 chr9 54301147 54301168 -69775004 + AT_rich Low_complexity Low_complexity 1 21 0 5 999 576 245 34 34 chr9 54301180 54301328 -69774844 + B1_Mur1 SINE Alu 2 149 0 5 999 1489 180 145 22 chr9 54302356 54303225 -69772947 + L1_Mur3 LINE L1 842 1800 -4080 5 999 3406 131 96 44 chr9 54303219 54303994 -69772178 + L1_Mur3 LINE L1 3764 4578 -1302 5 999 1392 213 176 34 chr9 54303997 54304474 -69771698 + Lx7 LINE L1 7125 7669 -27 5 999 392 225 84 28 chr9 54304532 54304710 -69771462 - MER33 DNA MER1_type -78 246 59 5 999 22 35 0 0 chr9 54304789 54304818 -69771354 + AT_rich Low_complexity Low_complexity 1 29 0 5 999 959 57 8 0 chr9 54305693 54305817 -69770355 + B2_Mm1t SINE B2 55 179 -14 5 999 432 74 6 55 chr9 54305845 54305954 -69770218 + B2_Mm2 SINE B2 48 186 -9 5 999 554 200 183 0 chr9 54306026 54306141 -69770031 - ID_B1 SINE B4 -5 219 84 5 999 325 236 83 19 chr9 54306192 54306300 -69769872 - PB1D10 SINE Alu 0 117 3 5 999 25 31 0 0 chr9 54307115 54307147 -69769025 + AT_rich Low_complexity Low_complexity 1 32 0 5 999 567 81 0 0 chr9 54307346 54307432 -69768740 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 999 232 262 0 0 chr9 54307452 54307494 -69768678 - ID SINE ID -176 48 7 5 999 1014 198 69 5 chr9 54307525 54307728 -69768444 + B3 SINE B2 1 216 0 5 999 757 258 49 15 chr9 54307736 54307941 -69768231 + B3 SINE B2 1 212 -4 5 999 26 0 0 0 chr9 54307991 54308017 -69768155 + AT_rich Low_complexity Low_complexity 1 26 0 5 999 297 380 117 0 chr9 54308479 54308658 -69767514 - MIR SINE MIR -49 213 14 5 999 1269 34 0 0 chr9 54309080 54309227 -69766945 + B1_Mm SINE Alu 1 147 0 5 999 189 94 0 0 chr9 54309227 54309259 -69766913 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 5 999 739 252 32 46 chr9 54309621 54309837 -69766335 + B3 SINE B2 1 213 -3 5 999 1045 174 43 10 chr9 54309862 54310071 -69766101 + B3 SINE B2 1 216 0 5 999 654 312 30 25 chr9 54310331 54310528 -69765644 - B4A SINE B4 -26 266 69 5 999 258 193 0 0 chr9 54310616 54310673 -69765499 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 999 231 344 0 0 chr9 54310878 54310942 -69765230 + ID4_ SINE ID 1 64 -19 5 999 43 35 0 0 chr9 54310942 54310999 -69765173 + AT_rich Low_complexity Low_complexity 1 57 0 5 999 228 67 0 0 chr9 54311098 54311128 -69765044 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 999 246 247 81 58 chr9 54311131 54311217 -69764955 + PB1D10 SINE Alu 29 116 -1 5 999 598 297 0 0 chr9 54312256 54312404 -69763768 - RSINE1 SINE B4 -16 149 2 5 999 267 292 0 63 chr9 54312555 54312650 -69763522 + B1F1 SINE Alu 1 89 -60 5 999 242 293 0 89 chr9 54312663 54312753 -69763419 + MT2B LTR ERVL 155 236 -365 5 999 295 247 78 88 chr9 54313017 54313119 -69763053 + B1_Mus1 SINE Alu 9 109 -39 5 999 623 277 116 44 chr9 54313502 54313846 -69762326 + MLT1E1A LTR MaLR 312 680 0 5 999 246 355 69 31 chr9 54313855 54313970 -69762202 - L2a LINE L2 -181 3245 3127 5 999 1632 31 0 0 chr9 54313970 54314161 -69762011 + B2_Mm1a SINE B2 1 191 -2 5 999 246 355 69 31 chr9 54314161 54314205 -69761967 - L2a LINE L2 -300 3126 3080 5 999 183 290 114 14 chr9 54314356 54314426 -69761746 - L2a LINE L2 -515 2904 2828 5 999 458 255 43 0 chr9 54314426 54314520 -69761652 - PB1D7 SINE Alu -10 110 13 5 999 273 287 250 9 chr9 54314520 54314542 -69761630 - B4A SINE B4 -75 217 74 5 999 181 348 172 26 chr9 54314744 54314936 -69761236 - L2a LINE L2 -995 2424 2205 5 999 21 0 0 0 chr9 54315113 54315134 -69761038 + AT_rich Low_complexity Low_complexity 1 21 0 5 999 395 324 44 0 chr9 54315145 54315327 -69760845 + L1MC1 LINE L1 6005 6194 -139 5 999 185 342 197 0 chr9 54315435 54315669 -69760503 - L2a LINE L2 -1304 2115 1836 5 999 210 269 14 69 chr9 54315739 54315811 -69760361 - B1F SINE Alu -80 69 2 5 999 385 331 128 15 chr9 54315860 54316133 -69760039 + L1M5 LINE L1 4730 5033 -1113 5 999 260 318 92 18 chr9 54316163 54316272 -69759900 + LTR16C LTR ERVL 1 117 -372 5 999 1167 221 45 47 chr9 54316605 54316985 -69759187 + MTE2a LTR MaLR 1 379 0 5 999 380 272 101 7 chr9 54317119 54317267 -69758905 + Charlie4 DNA MER1_type 133 294 -1667 5 999 481 247 58 13 chr9 54317387 54317543 -69758629 + L1M2 LINE L1 5627 5789 -508 5 999 482 183 26 80 chr9 54317603 54317716 -69758456 - PB1D9 SINE Alu -10 110 4 5 999 538 251 89 28 chr9 54317727 54317904 -69758268 - B3 SINE B2 -7 188 15 5 999 225 0 0 0 chr9 54317907 54317932 -69758240 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 5 999 694 281 23 0 chr9 54317937 54318110 -69758062 - B3A SINE B2 -31 185 1 5 999 421 144 175 0 chr9 54319083 54319180 -69756992 + MT2A LTR ERVL 419 532 -1 5 999 256 336 78 8 chr9 54319277 54319406 -69756766 - B4 SINE B4 -56 236 99 5 999 519 231 10 10 chr9 54319299 54319420 -69756752 - PB1D9 SINE Alu 0 120 2 5 999 245 329 0 12 chr9 54319782 54319862 -69756310 - ID4_ SINE ID -4 79 1 5 999 21 0 0 0 chr9 54320482 54320503 -69755669 + AT_rich Low_complexity Low_complexity 1 21 0 5 999 258 288 15 0 chr9 54322103 54322169 -69754003 + L2c LINE L2 3258 3324 -63 5 999 483 257 13 83 chr9 54322244 54322401 -69753771 - ID_B1 SINE B4 -13 211 66 5 999 279 132 109 13 chr9 54322470 54322546 -69753626 - PB1D10 SINE Alu -8 119 25 5 999 778 214 16 22 chr9 54322603 54322785 -69753387 + B3A SINE B2 2 182 -16 5 999 377 208 31 10 chr9 54323099 54323196 -69752976 - B3 SINE B2 -117 99 1 5 999 1179 35 21 0 chr9 54323264 54323407 -69752765 - B1_Mm SINE Alu 0 147 2 5 999 353 295 9 35 chr9 54323632 54323748 -69752424 + PB1 SINE Alu 5 117 -10 5 999 646 271 33 0 chr9 54323788 54323998 -69752174 + ID_B1 SINE B4 2 218 -6 5 999 377 222 37 0 chr9 54324002 54324083 -69752089 - RSINE1 SINE B4 0 165 82 5 999 253 241 169 22 chr9 54324157 54324246 -69751926 - B4 SINE B4 -190 102 1 5 999 405 0 0 0 chr9 54325171 54325216 -69750956 + (TAA)n Simple_repeat Simple_repeat 2 46 0 5 999 533 228 70 0 chr9 54325672 54325786 -69750386 + RSINE1 SINE B4 2 123 -42 5 999 420 37 0 0 chr9 54325789 54325843 -69750329 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 999 397 259 0 12 chr9 54326616 54326698 -69749474 - PB1 SINE Alu -2 125 45 5 999 1617 31 0 20 chr9 54326750 54326947 -69749225 + B2_Mm1a SINE B2 1 193 0 5 999 237 139 0 0 chr9 54327068 54327111 -69749061 + (A)n Simple_repeat Simple_repeat 1 43 0 5 999 271 302 41 25 chr9 54327804 54327926 -69748246 + PB1 SINE Alu 4 127 0 5 999 21 57 0 0 chr9 54328305 54328340 -69747832 + AT_rich Low_complexity Low_complexity 1 35 0 5 999 655 131 71 39 chr9 54328437 54328564 -69747608 + B1_Mur4 SINE Alu 19 149 -1 5 999 1173 68 7 0 chr9 54328569 54328716 -69747456 + B1_Mus1 SINE Alu 1 148 0 5 999 203 0 37 0 chr9 54328719 54328746 -69747426 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 5 999 217 191 21 0 chr9 54329265 54329312 -69746860 + (TTA)n Simple_repeat Simple_repeat 3 50 0 5 999 239 300 124 68 chr9 54329624 54329785 -69746387 - MLT1D LTR MaLR -266 239 70 5 999 393 141 0 0 chr9 54330017 54330088 -69746084 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 999 321 318 54 8 chr9 54330092 54330222 -69745950 + L1M5 LINE L1 2972 3107 -3039 5 999 215 218 35 35 chr9 54330336 54330393 -69745779 - MER5B DNA MER1_type 0 178 122 5 999 229 325 24 36 chr9 54330505 54330588 -69745584 + B4 SINE B4 60 141 -151 6 999 435 178 53 53 chr9 54330750 54330863 -69745309 + B1_Mus1 SINE Alu 35 147 -1 6 999 22 56 0 0 chr9 54330864 54330900 -69745272 + AT_rich Low_complexity Low_complexity 1 36 0 6 999 371 227 81 9 chr9 54331532 54331643 -69744529 + PB1 SINE Alu 4 122 -5 6 999 549 110 0 0 chr9 54332058 54332140 -69744032 + (GGAGA)n Simple_repeat Simple_repeat 3 84 0 6 999 23 33 0 0 chr9 54332186 54332216 -69743956 + AT_rich Low_complexity Low_complexity 1 30 0 6 999 5073 194 85 60 chr9 54332218 54333492 -69742680 + Lx9 LINE L1 6160 7465 -179 6 999 186 43 0 0 chr9 54333495 54333518 -69742654 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 6 999 882 154 126 11 chr9 54333682 54333872 -69742300 + RMER13A LTR ERVK 177 388 -472 6 999 1148 15 37 0 chr9 54333877 54334011 -69742161 + B1_Mm SINE Alu 1 139 -8 6 999 243 259 57 140 chr9 54334068 54334225 -69741947 + RMER13A LTR ERVK 520 663 -197 6 999 463 129 181 0 chr9 54334374 54334490 -69741682 + Lx9 LINE L1 7506 7642 -2 6 999 813 67 0 0 chr9 54334490 54334594 -69741578 - L1_Mus2 LINE L1 -451 6115 6012 6 999 1102 214 91 91 chr9 54335071 54335466 -69740706 - Lx9 LINE L1 -5 7639 7245 6 999 421 291 73 73 chr9 54335620 54335798 -69740374 + B3A SINE B2 1 178 -20 6 999 546 98 0 0 chr9 54335825 54335907 -69740265 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 999 792 190 0 27 chr9 54335925 54336071 -69740101 + B1_Mur1 SINE Alu 1 142 -7 6 999 1056 82 0 70 chr9 54336510 54336668 -69739504 + B1_Mus1 SINE Alu 2 148 0 6 999 528 16 0 0 chr9 54336674 54336735 -69739437 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 999 27 62 0 0 chr9 54336753 54336801 -69739371 + AT_rich Low_complexity Low_complexity 1 48 0 6 999 415 291 111 7 chr9 54336884 54337019 -69739153 + B1F SINE Alu 1 149 0 6 999 294 195 0 0 chr9 54337495 54337577 -69738595 + GA-rich Low_complexity Low_complexity 2 83 0 6 999 1006 165 107 10 chr9 54337817 54338013 -69738159 - B3 SINE B2 0 216 2 6 999 228 190 253 48 chr9 54338021 54338104 -69738068 - PB1D10 SINE Alu -3 114 15 6 999 578 246 51 0 chr9 54338347 54338485 -69737687 + B1F2 SINE Alu 5 149 0 6 999 856 41 123 0 chr9 54338488 54338610 -69737562 + B2_Mm2 SINE B2 1 137 -58 6 999 271 236 24 167 chr9 54338641 54338809 -69737363 + B1F1 SINE Alu 6 149 0 6 999 549 260 16 0 chr9 54339255 54339382 -69736790 - RSINE1 SINE B4 -35 130 2 6 999 374 272 12 0 chr9 54340215 54340296 -69735876 + B1F2 SINE Alu 1 82 -67 6 999 1204 49 7 0 chr9 54340348 54340492 -69735680 - B1_Mus2 SINE Alu -1 146 2 6 999 183 80 0 0 chr9 54340537 54340562 -69735610 + (A)n Simple_repeat Simple_repeat 1 25 0 6 999 1386 71 49 0 chr9 54341242 54341425 -69734747 + B2_Mm1t SINE B2 1 192 -1 6 999 255 125 0 0 chr9 54341425 54341465 -69734707 + (GGA)n Simple_repeat Simple_repeat 1 40 0 6 999 1038 197 4 107 chr9 54341909 54342142 -69734030 + B3 SINE B2 1 209 -7 6 999 1241 50 0 0 chr9 54342167 54342326 -69733846 + B2_Mm1a SINE B2 2 160 -33 6 999 207 0 0 0 chr9 54342326 54342349 -69733823 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 999 755 181 121 42 chr9 54342480 54342670 -69733502 - URR1A DNA MER1_type -21 205 1 6 999 216 259 0 65 chr9 54342682 54342744 -69733428 + B4A SINE B4 88 145 -147 6 999 360 271 0 0 chr9 54342695 54342780 -69733392 + PB1D10 SINE Alu 12 96 -21 6 999 551 248 149 28 chr9 54342795 54342936 -69733236 + RSINE1 SINE B4 8 165 0 6 999 540 206 126 8 chr9 54343355 54343482 -69732690 + B1_Mur2 SINE Alu 2 143 -6 6 999 633 224 23 186 chr9 54344114 54344372 -69731800 - B3 SINE B2 0 216 1 6 999 27 0 0 0 chr9 54344425 54344452 -69731720 + AT_rich Low_complexity Low_complexity 1 27 0 6 999 438 292 18 0 chr9 54344457 54344570 -69731602 + PB1D10 SINE Alu 3 117 0 6 999 315 71 0 0 chr9 54345219 54345261 -69730911 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 999 693 66 0 0 chr9 54345261 54345351 -69730821 + (TC)n Simple_repeat Simple_repeat 1 91 0 6 999 1182 68 0 0 chr9 54345394 54345542 -69730630 + B1_Mus1 SINE Alu 1 148 0 6 999 213 209 0 0 chr9 54346030 54346073 -69730099 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 999 1236 41 0 0 chr9 54346490 54346637 -69729535 + B1_Mus2 SINE Alu 1 147 0 6 999 439 224 36 120 chr9 54346780 54346947 -69729225 + B3A SINE B2 46 198 0 6 999 183 42 0 0 chr9 54347117 54347141 -69729031 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 999 315 0 0 0 chr9 54347682 54347717 -69728455 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 999 617 259 0 21 chr9 54347842 54347984 -69728188 - RSINE1 SINE B4 -25 140 2 6 999 25 0 0 0 chr9 54348638 54348663 -69727509 + AT_rich Low_complexity Low_complexity 1 25 0 6 999 237 221 26 70 chr9 54349438 54349594 -69726578 + (CGCGG)n Simple_repeat Simple_repeat 2 150 0 6 999 202 266 43 0 chr9 54349565 54349659 -69726513 + (CG)n Simple_repeat Simple_repeat 2 99 0 6 999 396 0 0 0 chr9 54350123 54350167 -69726005 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 999 306 233 0 0 chr9 54350982 54351055 -69725117 - ID4 SINE ID -10 73 1 6 999 468 233 0 33 chr9 54351520 54351640 -69724532 + PB1D10 SINE Alu 1 116 -1 6 999 318 78 0 45 chr9 54351687 54351754 -69724418 - B2_Mm1t SINE B2 -1 192 129 6 999 1025 101 0 0 chr9 54351789 54351937 -69724235 - B2_Mm2 SINE B2 -47 148 1 6 999 848 196 0 13 chr9 54352306 54352456 -69723716 + B1_Mur4 SINE Alu 2 149 -1 6 999 227 257 28 28 chr9 54352645 54352717 -69723455 + PB1D7 SINE Alu 1 72 -48 6 999 607 268 89 93 chr9 54352816 54353096 -69723076 + B4 SINE B4 14 292 0 6 999 218 258 0 0 chr9 54353535 54353597 -69722575 - B1_Mur1 SINE Alu -36 113 52 6 999 909 183 28 43 chr9 54353635 54353846 -69722326 + B3 SINE B2 3 210 -6 6 999 22 0 0 0 chr9 54353846 54353868 -69722304 + AT_rich Low_complexity Low_complexity 1 22 0 6 999 430 286 8 0 chr9 54353919 54354045 -69722127 - ID_B1 SINE B4 -8 216 90 6 999 337 250 60 67 chr9 54354045 54354059 -69722113 - B1F SINE Alu 0 95 1 6 999 367 246 167 0 chr9 54354155 54354269 -69721903 - MLT1F1 LTR MaLR -34 535 403 6 999 272 246 0 0 chr9 54354270 54354339 -69721833 + L1ME3A LINE L1 5867 5935 -244 6 999 3599 79 18 2 chr9 54354388 54354896 -69721276 - L1_Mus4 LINE L1 -6 6630 6115 6 999 13427 86 12 3 chr9 54355039 54357612 -69718560 - L1_Mus2 LINE L1 -1 6565 3968 6 999 343 300 105 20 chr9 54357703 54357856 -69718316 - MLT1F1 LTR MaLR -253 295 130 6 999 446 273 101 0 chr9 54357860 54357999 -69718173 + ID_B1 SINE B4 1 153 -71 6 999 790 210 23 95 chr9 54358073 54358294 -69717878 + B3 SINE B2 2 206 -10 6 999 414 250 64 35 chr9 54358726 54358867 -69717305 + B1F2 SINE Alu 5 149 0 6 999 990 121 0 0 chr9 54358884 54359041 -69717131 + (TTCC)n Simple_repeat Simple_repeat 3 159 0 6 999 588 192 80 0 chr9 54359042 54359167 -69717005 - B1_Mur3 SINE Alu -13 136 2 6 999 387 0 0 0 chr9 54359486 54359529 -69716643 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 999 1148 156 101 290 chr9 54359775 54360000 -69716172 + MTD LTR MaLR 1 210 -209 6 999 1449 83 10 10 chr9 54360000 54360195 -69715977 + B2_Mm2 SINE B2 1 195 0 6 999 1148 156 101 290 chr9 54360195 54360483 -69715689 + MTD LTR MaLR 211 417 -2 6 999 453 189 0 0 chr9 54360665 54360755 -69715417 + (TTA)n Simple_repeat Simple_repeat 1 90 0 6 999 240 111 0 0 chr9 54360771 54360807 -69715365 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 999 656 203 37 8 chr9 54360807 54360941 -69715231 - RSINE1 SINE B4 -24 141 4 6 999 476 299 36 0 chr9 54360980 54361117 -69715055 - ID_B1 SINE B4 -2 222 81 6 999 919 176 0 0 chr9 54361245 54361393 -69714779 + B1_Mur1 SINE Alu 2 149 0 6 999 1551 230 91 57 chr9 54362198 54362618 -69713554 - Lx6 LINE L1 -10 7450 7017 6 999 354 243 53 18 chr9 54362635 54362748 -69713424 + L1MB5 LINE L1 5743 5859 -324 6 999 653 264 0 0 chr9 54362785 54362925 -69713247 + ID_B1 SINE B4 85 224 0 6 999 723 299 47 22 chr9 54362949 54363226 -69712946 + L1MB5 LINE L1 5883 6166 -8 6 999 26 0 0 0 chr9 54363259 54363285 -69712887 + AT_rich Low_complexity Low_complexity 1 26 0 6 999 1392 68 23 0 chr9 54364237 54364414 -69711758 + B2_Mm2 SINE B2 1 181 -14 6 999 375 106 12 0 chr9 54364461 54364524 -69711648 + B2_Mm2 SINE B2 47 115 -83 6 999 261 0 0 0 chr9 54364540 54364569 -69711603 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 999 230 340 10 50 chr9 54364586 54364685 -69711487 + B4A SINE B4 86 180 -112 6 999 742 265 36 22 chr9 54364796 54365020 -69711152 + B4A SINE B4 2 228 -64 6 999 382 299 66 15 chr9 54365019 54365155 -69711017 + RSINE1 SINE B4 13 155 -10 6 999 1430 218 134 27 chr9 54365162 54365601 -69710571 + RMER5 LTR ERV1 10 495 -39 6 999 288 296 0 0 chr9 54365665 54365841 -69710331 + (CA)n Simple_repeat Simple_repeat 2 177 0 6 999 226 369 108 0 chr9 54367196 54367326 -69708846 + MIR SINE MIR 48 191 -71 6 999 9756 86 11 0 chr9 54368408 54370540 -69705632 - L1_Mus3 LINE L1 -6 6632 4479 6 999 946 255 39 71 chr9 54370616 54370899 -69705273 + B4 SINE B4 1 274 -18 6 999 432 255 39 0 chr9 54372105 54372207 -69703965 + PB1D9 SINE Alu 14 119 -1 7 999 247 283 0 0 chr9 54372533 54372593 -69703579 - B4 SINE B4 -153 139 80 7 999 338 274 67 117 chr9 54373154 54373217 -69702955 - L1ME2 LINE L1 -11 6151 6100 7 999 881 176 0 13 chr9 54373217 54373367 -69702805 - B1_Mur4 SINE Alu -2 148 1 7 999 339 274 67 117 chr9 54373367 54373526 -69702646 - L1ME2 LINE L1 -63 6099 5940 7 999 225 196 0 19 chr9 54373562 54373614 -69702558 - Charlie12 DNA MER1_type -169 2704 2654 7 999 616 253 10 11 chr9 54374044 54374201 -69701971 - ID_B1 SINE B4 -50 242 83 7 999 877 255 37 5 chr9 54374502 54374719 -69701453 + ID_B1 SINE B4 1 224 0 7 999 331 284 23 27 chr9 54375460 54375601 -69700571 - MLT1A1 LTR MaLR 0 408 215 7 999 399 229 110 37 chr9 54375924 54376033 -69700139 - PB1D10 SINE Alu 0 117 1 7 999 248 209 0 37 chr9 54376059 54376133 -69700039 - B1_Mur2 SINE Alu 0 120 53 7 999 189 222 0 82 chr9 54376295 54376344 -69699828 - L2a LINE L2 -19 3407 3363 7 999 955 242 5 23 chr9 54377045 54377265 -69698907 - B3 SINE B2 0 216 1 7 999 810 287 14 37 chr9 54377265 54377482 -69698690 - B4A SINE B4 -62 230 19 7 999 265 214 226 26 chr9 54377484 54377599 -69698573 - MIR SINE MIR -117 145 8 7 999 242 333 54 0 chr9 54378087 54378216 -69697956 - Charlie4a DNA MER1_type -3 505 370 7 999 434 335 52 0 chr9 54378247 54378480 -69697692 - Charlie4a DNA MER1_type -185 323 79 7 999 214 258 94 130 chr9 54378905 54378927 -69697245 - B2_Mm1t SINE B2 -8 185 167 7 999 561 233 90 0 chr9 54378927 54379060 -69697112 + B1_Mur1 SINE Alu 1 145 -4 7 999 214 258 94 130 chr9 54379060 54379080 -69697092 - B2_Mm1t SINE B2 -27 166 152 7 999 720 74 0 0 chr9 54379080 54379188 -69696984 + (TG)n Simple_repeat Simple_repeat 1 108 0 7 999 396 258 94 130 chr9 54379188 54379336 -69696836 - B3A SINE B2 -38 160 1 7 999 447 235 40 56 chr9 54379341 54379467 -69696705 - B1F SINE Alu -1 148 25 7 999 326 250 9 37 chr9 54380023 54380131 -69696041 + MLT1A1 LTR MaLR 304 408 0 7 999 224 272 53 32 chr9 54380138 54380233 -69695939 - MIRc SINE MIR -110 158 62 7 999 298 309 106 61 chr9 54380266 54380511 -69695661 - L1ME3A LINE L1 0 6173 5918 7 999 1111 193 127 4 chr9 54381053 54381298 -69694874 + B4A SINE B4 1 275 -17 7 999 216 0 0 0 chr9 54381317 54381341 -69694831 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 999 390 74 0 0 chr9 54381357 54381411 -69694761 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 999 383 0 21 0 chr9 54381411 54381458 -69694714 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 999 351 282 83 15 chr9 54382639 54382772 -69693400 + MER45A DNA Tip100 36 177 -1 7 999 281 287 27 16 chr9 54384295 54384430 -69691742 + MIR SINE MIR 86 225 -43 7 999 593 290 45 11 chr9 54384991 54385169 -69691003 + 7SK RNA RNA 1 184 -147 7 999 300 91 0 0 chr9 54385223 54385267 -69690905 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 999 237 256 158 0 chr9 54385286 54385368 -69690804 + L1ME3 LINE L1 5634 5728 -434 7 999 362 302 156 8 chr9 54385455 54385699 -69690473 + L1ME3 LINE L1 5882 6161 -1 7 999 1260 84 39 22 chr9 54385710 54385892 -69690280 + B2_Mm2 SINE B2 3 187 -8 7 999 263 93 0 23 chr9 54385898 54385924 -69690248 + (GA)n Simple_repeat Simple_repeat 2 27 0 7 999 486 0 0 0 chr9 54385924 54385978 -69690194 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 7 999 263 93 0 23 chr9 54385978 54385995 -69690177 + (GA)n Simple_repeat Simple_repeat 2 18 0 7 999 535 248 0 0 chr9 54386204 54386317 -69689855 + PB1D7 SINE Alu 1 113 -7 7 999 357 212 12 36 chr9 54386367 54386450 -69689722 + ID4 SINE ID 2 82 -1 7 999 223 189 75 0 chr9 54388230 54388283 -69687889 + L2a LINE L2 3361 3417 -9 7 999 676 238 0 0 chr9 54389327 54389453 -69686719 + B1_Mur4 SINE Alu 9 134 -16 7 999 366 312 61 27 chr9 54389328 54389476 -69686696 + B4 SINE B4 94 246 -46 7 999 897 208 63 19 chr9 54389885 54390091 -69686081 + B3 SINE B2 2 216 0 7 999 287 229 0 16 chr9 54390111 54390173 -69685999 + MER53 DNA hAT 133 193 0 7 999 321 47 0 0 chr9 54393086 54393129 -69683043 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 7 999 23 0 0 0 chr9 54394490 54394513 -69681659 + AT_rich Low_complexity Low_complexity 1 23 0 7 1000 204 330 20 50 chr9 54397433 54397532 -69678640 - MIRm SINE MIR -141 135 40 7 1000 247 218 18 0 chr9 54397999 54398054 -69678118 + CT-rich Low_complexity Low_complexity 2 57 0 7 1000 201 250 49 60 chr9 54398569 54398647 -69677525 + MIR SINE MIR 29 107 -161 7 1000 237 105 0 116 chr9 54398772 54398815 -69677357 + B4 SINE B4 50 87 -205 7 1000 432 55 0 0 chr9 54398817 54398872 -69677300 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 7 1000 277 217 42 28 chr9 54399042 54399113 -69677059 + PB1D10 SINE Alu 46 117 0 7 1000 189 0 0 0 chr9 54399358 54399379 -69676793 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 7 1000 26 30 0 0 chr9 54399527 54399560 -69676612 + AT_rich Low_complexity Low_complexity 1 33 0 7 1000 2141 93 86 0 chr9 54400010 54400311 -69675861 - ORR1A2 LTR MaLR 0 327 1 7 1000 1139 19 19 7 chr9 54401446 54401601 -69674571 + (CTATA)n Simple_repeat Simple_repeat 4 160 0 7 1000 199 333 42 0 chr9 54403989 54404061 -69672111 + MER5A DNA MER1_type 1 75 -114 7 1000 291 253 62 21 chr9 54404178 54404275 -69671897 + MER5B DNA MER1_type 34 134 -44 7 1000 384 283 0 11 chr9 54404293 54404386 -69671786 + PB1D10 SINE Alu 18 109 -8 7 1000 243 233 48 32 chr9 54404413 54404475 -69671697 + ID4_ SINE ID 6 68 -15 7 1000 188 184 26 0 chr9 54404499 54404537 -69671635 - MER5B DNA MER1_type -137 41 3 7 1000 189 306 152 10 chr9 54404555 54404654 -69671518 - MIRb SINE MIR -28 240 128 7 1000 229 345 66 39 chr9 54405011 54405192 -69670980 - MIRc SINE MIR -66 202 17 7 1000 942 113 0 0 chr9 54405216 54405358 -69670814 + (TCCC)n Simple_repeat Simple_repeat 4 145 0 7 1000 931 195 80 0 chr9 54405594 54405794 -69670378 + B3 SINE B2 1 216 0 7 1000 402 57 0 0 chr9 54405802 54405855 -69670317 + (GA)n Simple_repeat Simple_repeat 1 53 0 7 1000 549 0 0 0 chr9 54405855 54405916 -69670256 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 7 1000 250 240 40 13 chr9 54406158 54406234 -69669938 + GA-rich Low_complexity Low_complexity 2 79 0 7 1000 194 326 67 0 chr9 54407619 54407708 -69668464 - MIRb SINE MIR -133 135 41 7 1000 184 26 24 95 chr9 54408025 54408067 -69668105 + (CGGGGG)n Simple_repeat Simple_repeat 5 43 0 7 1000 548 182 100 0 chr9 54408908 54409018 -69667154 + ID_B1 SINE B4 103 223 -1 7 1000 406 228 13 0 chr9 54409040 54409119 -69667053 + ID4_ SINE ID 4 83 0 7 1000 1252 84 78 0 chr9 54409196 54409375 -69666797 - B2_Mm2 SINE B2 -1 194 2 7 1000 379 120 163 36 chr9 54409375 54409490 -69666682 - B2_Mm2 SINE B2 -3 190 47 7 1000 1301 91 23 0 chr9 54409536 54409712 -69666460 - B2_Mm2 SINE B2 -14 181 2 7 1000 655 268 98 27 chr9 54409729 54409913 -69666259 - B3A SINE B2 0 198 2 7 1000 527 256 51 63 chr9 54409964 54410019 -69666153 - B3 SINE B2 -1 215 164 7 1000 267 114 0 0 chr9 54410019 54410063 -69666109 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1000 527 256 51 63 chr9 54410063 54410182 -69665990 - B3 SINE B2 -53 163 43 7 1000 432 231 27 24 chr9 54410340 54410442 -69665730 - PB1D10 SINE Alu -3 124 22 7 1000 456 104 0 0 chr9 54410457 54410524 -69665648 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1000 210 71 0 0 chr9 54410696 54410724 -69665448 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 7 1000 1856 134 51 93 chr9 54411030 54411458 -69664714 - RMER17C LTR ERVK 0 410 1 7 1000 245 100 20 0 chr9 54411635 54411685 -69664487 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1000 534 256 31 16 chr9 54411885 54412012 -69664160 + RSINE1 SINE B4 5 133 -32 7 1000 521 254 152 0 chr9 54412053 54412191 -69663981 + RSINE1 SINE B4 3 161 -4 7 1000 39 38 0 0 chr9 54412193 54412246 -69663926 + AT_rich Low_complexity Low_complexity 1 53 0 7 1000 23 33 0 0 chr9 54412272 54412302 -69663870 + AT_rich Low_complexity Low_complexity 1 30 0 7 1000 474 224 46 18 chr9 54412304 54412413 -69663759 + PB1D10 SINE Alu 1 112 -5 7 1000 312 289 109 15 chr9 54412541 54412678 -69663494 + RSINE1 SINE B4 1 150 -15 7 1000 351 65 0 0 chr9 54412778 54412824 -69663348 + (GGA)n Simple_repeat Simple_repeat 2 47 0 7 1000 6370 130 39 39 chr9 54412959 54413131 -69663041 + Lx4A LINE L1 5979 6155 -903 7 1000 297 0 0 0 chr9 54413131 54413164 -69663008 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1000 6370 130 39 39 chr9 54413164 54414070 -69662102 + Lx4A LINE L1 6156 7057 -1 7 1000 1148 72 0 0 chr9 54414354 54414493 -69661679 - B1_Mus1 SINE Alu -8 140 2 7 1000 354 277 191 0 chr9 54415473 54415567 -69660605 - B1F SINE Alu -8 112 1 7 1000 217 366 47 47 chr9 54415486 54415592 -69660580 - B4 SINE B4 -125 167 62 7 1000 395 278 11 0 chr9 54415591 54415628 -69660544 + PB1D10 SINE Alu 21 111 -6 7 1000 262 179 0 82 chr9 54415628 54415639 -69660533 + ID_B1 SINE B4 169 218 -6 7 1000 232 214 35 35 chr9 54415639 54415681 -69660491 + FAM SINE Alu 258 301 -14 7 1000 1021 115 11 17 chr9 54415681 54415858 -69660314 + (GGAAA)n Simple_repeat Simple_repeat 3 178 0 7 1000 471 78 0 0 chr9 54415873 54415937 -69660235 + (GAAAA)n Simple_repeat Simple_repeat 1 64 0 7 1000 1135 91 22 43 chr9 54416142 54416326 -69659846 + B2_Mm2 SINE B2 2 181 -14 7 1000 188 34 0 33 chr9 54416490 54416520 -69659652 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1000 412 235 0 12 chr9 54416840 54416922 -69659250 - ID4 SINE ID 0 83 3 7 1000 371 208 38 91 chr9 54416936 54417068 -69659104 - ID_B1 SINE B4 0 224 100 8 1000 822 320 22 32 chr9 54417286 54417599 -69658573 + RLTR18 LTR ERVK 1 310 -306 8 1000 443 312 7 54 chr9 54417646 54417795 -69658377 + RLTR18B LTR ERVK 190 331 -181 8 1000 363 222 157 0 chr9 54418039 54418147 -69658025 - ID_B1 SINE B4 0 224 100 8 1000 226 384 50 59 chr9 54418395 54418442 -69657730 - ID_B1 SINE B4 -105 119 2 8 1000 247 375 0 0 chr9 54418442 54418514 -69657658 - ID4 SINE ID -10 73 2 8 1000 336 165 22 56 chr9 54418518 54418608 -69657564 - RMER17C LTR ERVK 0 410 324 8 1000 269 116 0 23 chr9 54418608 54418652 -69657520 - RMER17C LTR ERVK -367 43 1 8 1000 393 58 0 0 chr9 54418727 54418779 -69657393 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1000 612 192 0 9 chr9 54418808 54418913 -69657259 - B3 SINE B2 -112 104 1 8 1000 422 283 106 0 chr9 54418918 54419031 -69657141 - PB1 SINE Alu -2 125 1 8 1000 365 299 49 49 chr9 54419545 54419668 -69656504 + MTEb LTR MaLR 121 243 -136 8 1000 1552 162 101 53 chr9 54419672 54420019 -69656153 - RMER17C LTR ERVK 0 410 37 8 1000 3556 20 2 0 chr9 54420019 54420412 -69655760 + MTA_Mm LTR MaLR 1 394 -2 8 1000 9022 45 10 0 chr9 54420414 54421501 -69654671 + MTA_Mm-int LTR MaLR 1 1098 0 8 1000 3430 40 2 0 chr9 54421501 54421896 -69654276 + MTA_Mm LTR MaLR 1 396 0 8 1000 1552 174 117 49 chr9 54421896 54421969 -69654203 - RMER17C LTR ERVK -374 36 17 8 1000 410 167 68 45 chr9 54422067 54422155 -69654017 - B1_Mur2 SINE Alu 0 149 60 8 1000 727 249 55 104 chr9 54422130 54422222 -69653950 + MTE2b LTR MaLR 147 222 -157 8 1000 909 156 154 46 chr9 54422222 54422417 -69653755 - B3 SINE B2 0 216 1 8 1000 727 249 55 104 chr9 54422417 54422544 -69653628 + MTE2b LTR MaLR 223 355 -24 8 1000 2681 129 42 15 chr9 54423033 54423443 -69652729 + MTC LTR MaLR 1 421 0 8 1000 232 319 42 0 chr9 54423602 54423674 -69652498 + B4 SINE B4 1 75 -217 8 1000 377 250 0 0 chr9 54423715 54423783 -69652389 - B4A SINE B4 -26 266 199 8 1000 789 195 45 32 chr9 54423784 54424075 -69652097 - ORR1C2 LTR MaLR -1 383 20 8 1000 226 361 33 38 chr9 54424232 54424416 -69651756 - L2c LINE L2 -226 3161 2979 8 1000 493 211 11 0 chr9 54424530 54424620 -69651552 + B4 SINE B4 2 92 -200 8 1000 814 219 150 0 chr9 54424622 54424809 -69651363 + B3 SINE B2 2 216 0 8 1000 758 189 179 53 chr9 54424877 54425067 -69651105 + B3 SINE B2 3 216 0 8 1000 822 147 88 0 chr9 54425200 54425336 -69650836 + B1_Mur1 SINE Alu 1 148 -1 8 1000 371 308 49 24 chr9 54425347 54425470 -69650702 + B4 SINE B4 107 232 -60 8 1000 330 221 0 56 chr9 54425471 54425543 -69650629 + ORR1C2 LTR MaLR 1 68 -306 8 1000 1014 194 40 137 chr9 54425545 54425844 -69650328 - RLTR25B LTR ERVK 0 1028 759 8 1000 4743 134 63 22 chr9 54426132 54426183 -69649989 - RLTR25B LTR ERVK -170 858 803 8 1000 207 0 0 0 chr9 54426183 54426206 -69649966 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1000 4743 134 63 22 chr9 54426206 54426978 -69649194 - RLTR25B LTR ERVK -226 802 2 8 1000 1557 183 45 10 chr9 54426986 54427278 -69648894 + ORR1C2 LTR MaLR 83 384 0 8 1000 210 71 0 0 chr9 54427327 54427355 -69648817 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1000 1220 191 196 14 chr9 54428059 54428340 -69647832 + MTE2b LTR MaLR 28 359 -20 8 1000 510 277 6 69 chr9 54428824 54428898 -69647274 + B1F SINE Alu 1 67 -82 8 1000 1052 101 14 0 chr9 54428898 54429037 -69647135 + B1_Mur4 SINE Alu 5 145 -5 8 1000 510 277 6 69 chr9 54429037 54429121 -69647051 + B1F SINE Alu 68 149 0 8 1000 526 267 150 0 chr9 54429258 54429378 -69646794 + RSINE1 SINE B4 12 149 -16 8 1000 324 70 0 0 chr9 54429399 54429442 -69646730 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 8 1000 667 114 130 9 chr9 54429545 54429660 -69646512 + B2_Mm2 SINE B2 1 129 -66 8 1000 787 147 14 75 chr9 54429671 54429818 -69646354 + B1_Mur4 SINE Alu 13 150 0 8 1000 785 305 108 16 chr9 54429935 54430242 -69645930 + RMER5 LTR ERV1 83 417 -117 8 1000 207 69 0 0 chr9 54430245 54430274 -69645898 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1000 2304 98 13 0 chr9 54430571 54430886 -69645286 - ORR1A2 LTR MaLR -8 319 1 8 1000 330 132 0 0 chr9 54431235 54431288 -69644884 + (A)n Simple_repeat Simple_repeat 1 53 0 8 1000 605 237 78 58 chr9 54431291 54431497 -69644675 - B3 SINE B2 -1 215 6 8 1000 4265 132 34 40 chr9 54431649 54432194 -69643978 - RMER6A LTR ERVK 0 756 214 8 1000 1630 36 5 0 chr9 54432194 54432386 -69643786 - B2_Mm1t SINE B2 0 193 1 8 1000 4265 132 34 40 chr9 54432386 54432600 -69643572 - RMER6A LTR ERVK -543 213 1 8 1000 757 167 16 0 chr9 54432602 54432728 -69643444 - B1_Mus1 SINE Alu -20 128 1 8 1000 509 271 8 8 chr9 54432765 54432884 -69643288 + RMER5 LTR ERV1 403 521 -13 8 1000 845 240 40 70 chr9 54432898 54432926 -69643246 - B4A SINE B4 0 292 268 8 1000 579 29 0 0 chr9 54432926 54432995 -69643177 + (GA)n Simple_repeat Simple_repeat 1 69 0 8 1000 845 240 40 70 chr9 54432995 54433266 -69642906 - B4A SINE B4 -25 267 2 8 1000 903 227 16 18 chr9 54433362 54433561 -69642611 - B3 SINE B2 -6 210 13 8 1000 24 23 0 43 chr9 54433561 54433579 -69642593 + AT_rich Low_complexity Low_complexity 1 18 0 8 1000 926 158 27 0 chr9 54433579 54433725 -69642447 + B1_Mur4 SINE Alu 1 150 0 8 1000 24 23 0 43 chr9 54433725 54433752 -69642420 + AT_rich Low_complexity Low_complexity 1 26 0 8 1000 418 276 80 107 chr9 54433758 54433908 -69642264 + ID_B1 SINE B4 78 223 -1 8 1000 219 359 90 21 chr9 54434986 54435131 -69641041 - MIR3 SINE MIR -23 185 31 8 1000 182 333 141 0 chr9 54435336 54435414 -69640758 + MIRb SINE MIR 60 148 -120 8 1000 310 221 194 16 chr9 54436010 54436134 -69640038 - B1F SINE Alu -1 148 3 8 1000 233 231 200 0 chr9 54436714 54436779 -69639393 - ID4_ SINE ID -5 78 1 8 1000 217 266 0 59 chr9 54436792 54436860 -69639312 - B1F SINE Alu -4 145 82 8 1000 328 123 77 0 chr9 54436891 54436956 -69639216 - PB1D9 SINE Alu 0 120 51 8 1000 1000 254 139 0 chr9 54437156 54437408 -69638764 + B4A SINE B4 1 287 -5 8 1000 627 311 103 27 chr9 54438577 54438944 -69637228 + Lx8 LINE L1 7079 7473 0 8 1000 249 254 0 0 chr9 54438888 54438955 -69637217 + RMER1B Other Other 997 1063 -3 8 1000 372 221 40 89 chr9 54439019 54439143 -69637029 + PB1D7 SINE Alu 1 118 -2 8 1000 322 219 0 0 chr9 54439298 54439371 -69636801 - Lx8 LINE L1 -2 7471 7399 8 1000 185 167 28 0 chr9 54439673 54439709 -69636463 + L3 LINE CR1 2446 2482 -2007 8 1000 446 257 76 0 chr9 54440382 54440526 -69635646 + RSINE1 SINE B4 3 157 -8 8 1000 609 224 90 0 chr9 54440572 54440706 -69635466 + B1_Mur1 SINE Alu 1 146 -3 8 1000 886 218 66 43 chr9 54440743 54440954 -69635218 - B3 SINE B2 0 216 1 8 1000 355 288 30 99 chr9 54440960 54441015 -69635157 - B1F SINE Alu -7 142 100 8 1000 4090 132 72 14 chr9 54441015 54441669 -69634503 - RLTR17 LTR ERVK 0 692 1 8 1000 355 288 30 99 chr9 54441669 54441744 -69634428 - B1F SINE Alu -50 99 21 8 1000 655 228 139 59 chr9 54442157 54442395 -69633777 + B4 SINE B4 2 258 -34 8 1000 587 222 107 85 chr9 54442419 54442690 -69633482 - L1MB7 LINE L1 -63 6121 5845 8 1000 250 307 102 0 chr9 54443232 54443320 -69632852 - PB1D10 SINE Alu -2 115 19 8 1000 309 51 0 0 chr9 54443341 54443380 -69632792 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 8 1000 769 136 53 0 chr9 54444091 54444223 -69631949 - B1_Mur2 SINE Alu 0 149 11 8 1000 320 231 58 117 chr9 54444130 54444267 -69631905 - MT2B LTR ERVL -343 258 130 8 1000 421 200 238 16 chr9 54445239 54445283 -69630889 + B1F SINE Alu 1 149 0 8 1000 479 192 0 0 chr9 54445283 54445361 -69630811 + ID_B1 SINE B4 147 224 0 8 1000 905 91 53 8 chr9 54445452 54445585 -69630587 - B1_Mus2 SINE Alu -7 140 2 8 1000 560 202 17 26 chr9 54445709 54445826 -69630346 - PB1D9 SINE Alu 0 120 5 8 1000 255 261 160 18 chr9 54445901 54446055 -69630117 - B4 SINE B4 -1 291 108 8 1000 419 258 68 73 chr9 54447126 54447360 -69628812 - L1MC4 LINE L1 -1047 6995 6763 8 1000 265 257 26 51 chr9 54447522 54447600 -69628572 - PB1D10 SINE Alu -27 90 15 8 1000 514 236 48 48 chr9 54447795 54447942 -69628230 - B1_Mur1 SINE Alu -1 148 2 8 1000 1020 138 0 0 chr9 54447942 54448109 -69628063 + (TA)n Simple_repeat Simple_repeat 1 167 0 8 1000 201 94 0 0 chr9 54448253 54448285 -69627887 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1000 241 278 0 18 chr9 54448751 54448806 -69627366 - ID4 SINE ID -2 81 28 8 1000 205 51 25 25 chr9 54449116 54449156 -69627016 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 8 1000 1210 48 0 0 chr9 54449184 54449331 -69626841 - B1_Mus2 SINE Alu 0 147 1 8 1000 736 148 0 17 chr9 54449343 54449460 -69626712 - B1_Mur3 SINE Alu -7 142 28 8 1000 455 269 20 66 chr9 54450738 54450889 -69625283 - B1_Mur1 SINE Alu -5 144 1 8 1000 682 207 387 15 chr9 54453342 54453608 -69622564 + ORR1D1 LTR MaLR 8 372 -2 8 1000 1126 109 0 0 chr9 54453921 54454077 -69622095 - ORR1B1 LTR MaLR -8 386 231 8 1000 578 116 0 0 chr9 54454073 54454159 -69622013 - ORR1B1 LTR MaLR -304 90 5 8 1000 349 287 101 6 chr9 54454155 54454323 -69621849 - MER2 DNA MER2_type -43 302 119 8 1000 293 313 39 58 chr9 54454304 54454460 -69621712 - YREP_Mm Unknown Unknown -1474 338 186 8 1000 578 225 41 8 chr9 54454340 54454461 -69621711 + B1F SINE Alu 17 141 -8 8 1000 303 260 50 99 chr9 54454345 54454471 -69621701 + B4A SINE B4 106 224 -68 8 1000 244 346 12 12 chr9 54454471 54454553 -69621619 + ID4 SINE ID 2 83 0 8 1000 279 303 116 78 chr9 54454698 54454940 -69621232 + MLT1F LTR MaLR 183 517 -52 8 1000 802 197 0 14 chr9 54454941 54455080 -69621092 - ID_B1 SINE B4 0 224 88 8 1000 795 238 34 81 chr9 54455462 54455979 -69620193 + RMER10A LTR ERVL 3 408 -34 8 1000 556 328 82 43 chr9 54456360 54456640 -69619532 - MER2 DNA MER2_type -29 316 26 9 1000 281 311 54 54 chr9 54457876 54458005 -69618167 - MIRc SINE MIR -122 146 18 9 1000 257 350 51 78 chr9 54457981 54458107 -69618065 + L2c LINE L2 3004 3134 -253 9 1000 1277 84 83 11 chr9 54458107 54458124 -69618048 - B2_Mm2 SINE B2 -1 194 178 9 1000 252 0 0 0 chr9 54458124 54458152 -69618020 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 9 1000 1277 84 83 11 chr9 54458152 54458315 -69617857 - B2_Mm2 SINE B2 -18 177 1 9 1000 257 350 51 78 chr9 54458315 54458405 -69617767 + L2c LINE L2 3135 3214 -173 9 1000 1387 196 67 79 chr9 54458583 54458999 -69617173 + RMER10A LTR ERVL 1 411 -31 9 1000 459 0 0 0 chr9 54459003 54459054 -69617118 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 1000 585 105 0 0 chr9 54459090 54459176 -69616996 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 9 1000 22 0 0 0 chr9 54459388 54459410 -69616762 + AT_rich Low_complexity Low_complexity 1 22 0 9 1000 363 280 145 40 chr9 54460069 54460331 -69615841 + B4 SINE B4 24 277 -15 9 1000 737 170 61 47 chr9 54460363 54460511 -69615661 + B1_Mur4 SINE Alu 1 150 0 9 1000 274 291 38 12 chr9 54460897 54460977 -69615195 + B1F1 SINE Alu 12 93 -56 9 1000 309 186 210 30 chr9 54461070 54461170 -69615002 + PB1 SINE Alu 1 125 -2 9 1000 261 297 0 0 chr9 54461190 54461254 -69614918 + ID2 SINE ID 19 82 -1 9 1000 529 307 104 77 chr9 54461254 54461706 -69614466 + L1M5 LINE L1 4291 4754 -1392 9 1000 766 179 88 116 chr9 54461860 54462075 -69614097 - URR1A DNA MER1_type -12 214 6 9 1000 849 57 0 0 chr9 54462962 54463068 -69613104 - B2_Mm2 SINE B2 -88 107 2 9 1000 524 322 20 91 chr9 54463078 54463276 -69612896 - B3A SINE B2 -10 185 2 9 1000 191 204 19 0 chr9 54463304 54463358 -69612814 + (TTA)n Simple_repeat Simple_repeat 2 56 0 9 1000 180 0 0 0 chr9 54463431 54463451 -69612721 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1000 233 273 48 72 chr9 54463970 54464053 -69612119 - MamRep38 DNA hAT -214 81 1 9 1000 447 308 35 46 chr9 54464094 54464319 -69611853 - ID_B1 SINE B4 0 292 72 9 1000 292 237 17 0 chr9 54464424 54464483 -69611689 - BC1_Mm scRNA scRNA -89 63 4 9 1000 387 289 53 0 chr9 54464571 54464685 -69611487 + PB1D7 SINE Alu 1 120 0 9 1000 1762 151 72 123 chr9 54464788 54464819 -69611353 + ORR1B1 LTR MaLR 1 31 -363 9 1000 1393 84 20 26 chr9 54464819 54465014 -69611158 + B2_Mm2 SINE B2 2 195 0 9 1000 1762 151 72 123 chr9 54465014 54465287 -69610885 + ORR1B1 LTR MaLR 32 292 -102 9 1000 1204 61 0 7 chr9 54465287 54465435 -69610737 - B1_Mus2 SINE Alu 0 147 1 9 1000 1762 151 72 123 chr9 54465435 54465544 -69610628 + ORR1B1 LTR MaLR 293 394 0 9 1000 629 232 27 40 chr9 54466292 54466430 -69609742 + B1F SINE Alu 2 141 -8 9 1000 292 43 21 21 chr9 54466430 54466477 -69609695 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1000 629 250 7 14 chr9 54466486 54466624 -69609548 + RSINE1 SINE B4 3 139 -26 9 1000 217 276 64 108 chr9 54466624 54466689 -69609483 + B2_Mm2 SINE B2 2 195 0 9 1000 626 202 0 52 chr9 54466706 54466821 -69609351 + B1_Mur3 SINE Alu 5 113 -36 9 1000 405 0 0 0 chr9 54466843 54466888 -69609284 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1000 23 33 0 0 chr9 54466904 54466934 -69609238 + AT_rich Low_complexity Low_complexity 1 30 0 9 1000 288 361 200 0 chr9 54466944 54467124 -69609048 + B4A SINE B4 1 216 -76 9 1000 1096 254 18 24 chr9 54467147 54467482 -69608690 + Lx9 LINE L1 5761 6093 -1551 9 1000 2157 242 67 29 chr9 54467531 54468186 -69607986 + Lx9 LINE L1 6289 6968 -676 9 1000 1200 48 21 0 chr9 54468205 54468350 -69607822 + B1_Mus1 SINE Alu 1 148 0 9 1000 916 230 9 47 chr9 54468401 54468615 -69607557 + B3 SINE B2 5 210 -6 9 1000 718 191 33 33 chr9 54468732 54468919 -69607253 + B3A SINE B2 1 183 -12 9 1000 306 0 0 0 chr9 54469021 54469055 -69607117 + (CAA)n Simple_repeat Simple_repeat 3 36 0 9 1000 277 346 24 71 chr9 54469056 54469224 -69606948 + MLT1L LTR MaLR 154 313 -297 9 1000 433 170 36 91 chr9 54469372 54469482 -69606690 + MT2B LTR ERVL 155 258 -343 9 1000 996 16 62 0 chr9 54469385 54469513 -69606659 + B1_Mus1 SINE Alu 7 142 -6 9 1000 28 0 0 0 chr9 54469519 54469547 -69606625 + AT_rich Low_complexity Low_complexity 1 28 0 9 1000 336 183 0 31 chr9 54470961 54471057 -69605115 + (CA)n Simple_repeat Simple_repeat 1 93 0 9 1000 219 214 89 0 chr9 54471304 54471360 -69604812 + B4A SINE B4 86 146 -146 9 1000 1187 219 33 103 chr9 54471396 54471823 -69604349 + RMER17C LTR ERVK 1 397 -13 9 1000 511 269 137 66 chr9 54472652 54472923 -69603249 - B4A SINE B4 0 292 3 9 1000 1362 119 184 4 chr9 54472955 54473232 -69602940 - Lx9 LINE L1 -6 7638 7312 9 1000 921 186 17 17 chr9 54473234 54473414 -69602758 + Lx9 LINE L1 7132 7311 -333 9 1000 1217 48 0 13 chr9 54473908 54474057 -69602115 + B1_Mm SINE Alu 1 147 0 9 1000 405 0 0 0 chr9 54475396 54475441 -69600731 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 1000 450 0 0 0 chr9 54475441 54475490 -69600682 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1000 351 0 0 0 chr9 54476667 54476706 -69599466 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1000 323 298 10 0 chr9 54477003 54477109 -69599063 - MIRc SINE MIR -117 151 45 9 1000 270 0 0 0 chr9 54477388 54477418 -69598754 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1000 451 225 38 0 chr9 54477431 54477511 -69598661 - B1F SINE Alu -66 83 1 9 1000 251 291 89 32 chr9 54478003 54478112 -69598060 + MIRb SINE MIR 13 119 -149 9 1000 797 308 59 50 chr9 54478154 54478577 -69597595 + L1MB7 LINE L1 5513 5939 -245 9 1000 379 292 136 20 chr9 54478634 54478781 -69597391 + RSINE1 SINE B4 2 165 0 9 1000 964 148 26 57 chr9 54478800 54478994 -69597178 + B2_Mm2 SINE B2 1 188 -7 9 1000 1078 231 9 0 chr9 54479102 54479318 -69596854 + ID_B1 SINE B4 2 219 -5 9 1000 285 29 0 0 chr9 54479319 54479353 -69596819 + (GGA)n Simple_repeat Simple_repeat 1 34 0 9 1000 309 217 0 80 chr9 54479621 54479696 -69596476 - ID4 SINE ID -13 70 2 9 1000 328 241 214 6 chr9 54480303 54480462 -69595710 + L1MA8 LINE L1 6095 6286 -5 9 1000 1736 180 50 14 chr9 54480623 54480849 -69595323 + ORR1D1 LTR MaLR 1 228 -146 9 1000 407 78 16 0 chr9 54480849 54480913 -69595259 + (CCTG)n Simple_repeat Simple_repeat 2 66 0 9 1000 1736 180 50 14 chr9 54480913 54481047 -69595125 + ORR1D1 LTR MaLR 229 373 -1 9 1000 249 97 65 0 chr9 54481104 54481166 -69595006 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 9 1000 25 31 0 0 chr9 54481166 54481198 -69594974 + AT_rich Low_complexity Low_complexity 1 32 0 9 1000 966 228 31 45 chr9 54482336 54482590 -69593582 - RLTR20C LTR ERVK 0 578 329 9 1000 1423 70 27 0 chr9 54482590 54482777 -69593395 - B2_Mm1a SINE B2 0 193 2 9 1000 952 256 106 121 chr9 54482777 54483109 -69593063 - RLTR20C LTR ERVK -238 340 1 9 1000 453 279 169 54 chr9 54484539 54484645 -69591527 + B4A SINE B4 1 133 -159 9 1000 200 34 0 33 chr9 54484645 54484675 -69591497 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 9 1000 453 279 169 54 chr9 54484675 54484829 -69591343 + B4A SINE B4 134 291 -1 9 1000 396 0 0 0 chr9 54484841 54484885 -69591287 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1000 414 238 43 1 chr9 54487430 54487527 -69588645 + PB1D7 SINE Alu 3 103 -46 9 1000 183 114 0 0 chr9 54487527 54487562 -69588610 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 9 1000 379 274 50 29 chr9 54487562 54487603 -69588569 + B1_Mur3 SINE Alu 104 143 -6 9 1000 411 21 0 0 chr9 54488137 54488185 -69587987 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1000 258 156 0 0 chr9 54489260 54489305 -69586867 + (CAT)n Simple_repeat Simple_repeat 2 46 0 9 1000 434 326 0 15 chr9 54489307 54489433 -69586739 - B1F SINE Alu 0 120 6 9 1000 186 48 68 45 chr9 54489867 54489911 -69586261 + T-rich Low_complexity Low_complexity 1 45 0 9 1000 192 269 139 13 chr9 54490590 54490669 -69585503 + MIRm SINE MIR 47 135 -141 9 1000 282 309 82 10 chr9 54491152 54491250 -69584922 - MER91C DNA Tip100 -33 107 3 9 1000 232 234 0 78 chr9 54492784 54492835 -69583337 + tRNA-Ala-GCG tRNA tRNA 20 66 -9 9 1000 212 276 0 121 chr9 54492835 54492850 -69583322 + ID4_ SINE ID 26 83 0 9 1000 401 298 32 26 chr9 54495433 54495588 -69580584 - MIR SINE MIR -78 184 29 9 1000 230 315 71 93 chr9 54497596 54497736 -69578436 - MIRb SINE MIR -18 250 114 9 1000 1241 42 0 0 chr9 54498015 54498159 -69578013 - B1_Mm SINE Alu -3 144 1 9 1000 476 155 19 58 chr9 54498165 54498268 -69577904 - B2_Mm1t SINE B2 -84 109 11 9 1000 376 135 0 26 chr9 54498274 54498350 -69577822 + CT-rich Low_complexity Low_complexity 3 76 0 9 1000 343 363 73 0 chr9 54498365 54498489 -69577683 - RSINE1 SINE B4 0 165 33 9 1000 184 330 143 27 chr9 54498621 54498733 -69577439 + MIR3 SINE MIR 83 207 -1 9 1000 270 325 207 11 chr9 54499008 54499182 -69576990 - MIR SINE MIR -30 232 25 9 1000 258 158 78 95 chr9 54499522 54499620 -69576552 - B1F SINE Alu -3 146 7 9 1000 825 79 0 0 chr9 54499803 54499930 -69576242 + (TG)n Simple_repeat Simple_repeat 2 128 0 9 1000 668 289 40 40 chr9 54500000 54500249 -69575923 - B4A SINE B4 -43 249 1 1 1000 361 237 82 23 chr9 54500284 54500445 -69575727 + L1MEf LINE L1 1110 1309 -5169 2 1000 300 240 143 20 chr9 54500501 54500599 -69575573 + PB1D10 SINE Alu 8 117 0 3 1000 186 156 0 0 chr9 54500601 54500646 -69575526 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 4 1000 1021 220 45 0 chr9 54500732 54500932 -69575240 + B3 SINE B2 1 209 -7 5 1000 794 266 68 102 chr9 54500993 54501266 -69574906 + L1MB5 LINE L1 4700 4976 -1170 6 1000 462 114 0 0 chr9 54501266 54501336 -69574836 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1000 794 266 68 102 chr9 54501336 54501640 -69574532 + L1MB5 LINE L1 4977 5257 -889 6 1000 494 248 49 63 chr9 54501640 54501782 -69574390 + B4 SINE B4 65 204 -88 8 1000 818 130 0 82 chr9 54501670 54501792 -69574380 + B1_Mur4 SINE Alu 5 124 -26 9 1000 227 31 0 30 chr9 54501792 54501825 -69574347 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 1 1000 818 130 0 82 chr9 54501825 54501861 -69574311 + B1_Mur4 SINE Alu 125 150 0 9 1000 468 264 92 10 chr9 54501863 54502058 -69574114 + L1MB5 LINE L1 5318 5528 -650 6 1000 568 230 70 28 chr9 54502118 54502261 -69573911 + B1_Mur1 SINE Alu 1 149 0 1 1000 581 270 111 9 chr9 54502266 54502483 -69573689 + L1MB5 LINE L1 5594 5832 -342 6 1000 488 235 0 12 chr9 54502486 54502598 -69573574 + PB1D7 SINE Alu 20 124 -24 1 1000 352 293 44 15 chr9 54502768 54502903 -69573269 + L1MB5 LINE L1 6041 6179 -5 6 1000 250 223 27 14 chr9 54503012 54503103 -69573069 + L1MEf LINE L1 1278 1347 -5037 2 1000 209 30 0 57 chr9 54503204 54503239 -69572933 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1000 384 243 68 0 chr9 54503488 54503591 -69572581 - PB1D10 SINE Alu -6 111 2 1 1000 389 332 72 57 chr9 54503597 54504016 -69572156 + MLT1H1 LTR MaLR 22 403 -152 1 1000 372 326 64 32 chr9 54504048 54504235 -69571937 + MLT1D LTR MaLR 32 224 -281 1 1000 249 254 202 12 chr9 54504349 54504526 -69571646 + L1ME2z LINE L1 5855 6094 -85 1 1000 204 67 0 0 chr9 54504751 54504781 -69571391 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1 1000 535 122 322 13 chr9 54504952 54505101 -69571071 - B3A SINE B2 -3 195 1 1 1000 216 0 0 0 chr9 54505123 54505147 -69571025 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1000 705 286 130 35 chr9 54505157 54505418 -69570754 - Lx8 LINE L1 -193 7280 6995 2 1000 293 247 12 0 chr9 54506031 54506112 -69570060 - L1MB4 LINE L1 0 6180 6099 2 1000 576 300 8 0 chr9 54506153 54506283 -69569889 - RSINE1 SINE B4 -33 132 2 2 1000 313 70 17 17 chr9 54506344 54506402 -69569770 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1000 182 265 0 39 chr9 54507406 54507457 -69568715 + L2b LINE L2 3324 3372 -3 2 1000 446 304 34 7 chr9 54507701 54507847 -69568325 - MIRc SINE MIR -75 193 44 2 1000 249 323 7 142 chr9 54507967 54508122 -69568050 - MIRc SINE MIR -112 156 23 2 1000 362 280 15 99 chr9 54510281 54510412 -69565760 - MLT1C LTR MaLR 0 467 348 2 1000 495 273 143 11 chr9 54510507 54510696 -69565476 - MLT1C LTR MaLR -243 224 11 2 1000 310 294 21 52 chr9 54510843 54510940 -69565232 - L1MC4a LINE L1 -1186 6696 6603 2 1000 408 67 0 0 chr9 54510940 54511000 -69565172 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1000 902 263 72 105 chr9 54511175 54511507 -69564665 - RLTR18B LTR ERVK -5 507 187 3 1000 672 251 251 18 chr9 54511530 54511757 -69564415 - RLTR18 LTR ERVK -232 280 1 3 1000 214 274 27 27 chr9 54512276 54512351 -69563821 + MIR3 SINE MIR 110 184 -24 3 1000 513 0 0 0 chr9 54513114 54513171 -69563001 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1000 469 55 14 14 chr9 54513171 54513244 -69562928 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1000 347 276 11 11 chr9 54513392 54513480 -69562692 - B4A SINE B4 -203 89 2 3 1000 28 0 0 0 chr9 54513793 54513821 -69562351 + AT_rich Low_complexity Low_complexity 1 28 0 3 1000 1101 147 47 38 chr9 54513979 54514191 -69561981 - B3 SINE B2 -1 215 2 3 1000 527 29 14 0 chr9 54514697 54514766 -69561406 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1000 180 0 0 0 chr9 54514766 54514785 -69561387 + (TAGTG)n Simple_repeat Simple_repeat 1 20 0 4 1000 698 169 88 0 chr9 54514786 54514922 -69561250 + ORR1D1 LTR MaLR 9 156 -218 4 1000 3364 202 101 39 chr9 54514929 54515266 -69560906 + Lx7 LINE L1 6199 6582 -1114 4 1000 1324 103 16 0 chr9 54515266 54515450 -69560722 + B2_Mm2 SINE B2 2 188 -7 4 1000 3364 247 97 49 chr9 54515450 54516331 -69559841 + Lx7 LINE L1 6572 7445 -15 4 1000 442 203 164 124 chr9 54516335 54516560 -69559612 + ORR1D1 LTR MaLR 151 384 0 4 1000 502 207 123 26 chr9 54516571 54516685 -69559487 - RSINE1 SINE B4 -38 127 3 4 1000 1021 157 107 44 chr9 54517176 54517382 -69558790 - URR1A DNA MER1_type -3 223 5 4 1000 417 243 18 36 chr9 54517464 54517575 -69558597 - RSINE1 SINE B4 -30 135 27 4 1000 636 256 98 87 chr9 54517679 54517841 -69558331 + B3A SINE B2 1 162 -33 4 1000 327 113 0 0 chr9 54517841 54517903 -69558269 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1000 416 256 98 87 chr9 54517903 54517924 -69558248 + B2_Mm2 SINE B2 163 186 -9 4 1000 500 218 130 53 chr9 54517947 54518078 -69558094 - B1_Mur1 SINE Alu -3 146 6 4 1000 217 237 0 0 chr9 54518138 54518197 -69557975 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1000 384 259 132 101 chr9 54518956 54518994 -69557178 - RSINE1 SINE B4 0 165 125 5 1000 1332 226 38 28 chr9 54518994 54519281 -69556891 - B4A SINE B4 0 292 3 5 1000 384 259 132 101 chr9 54519281 54519312 -69556860 - RSINE1 SINE B4 -41 124 105 5 1000 522 31 0 0 chr9 54519312 54519376 -69556796 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1000 384 259 132 101 chr9 54519376 54519464 -69556708 - RSINE1 SINE B4 -61 104 2 5 1000 473 278 193 28 chr9 54519860 54520258 -69555914 + L2a LINE L2 2790 3268 -158 5 1000 375 285 67 37 chr9 54520316 54520451 -69555721 + Tigger7 DNA MER2_type 1 139 -2352 5 1000 280 331 171 6 chr9 54520443 54520601 -69555571 - Tigger7 DNA MER2_type -2184 307 124 5 1000 677 268 163 12 chr9 54520661 54520907 -69555265 + Tigger7 DNA MER2_type 2173 2455 -36 5 1000 1743 174 86 60 chr9 54520910 54521307 -69554865 + MTD LTR MaLR 5 411 -8 5 1000 193 295 16 32 chr9 54521351 54521414 -69554758 + L2a LINE L2 3363 3424 -2 5 1000 622 108 180 0 chr9 54521500 54521611 -69554561 + B1_Mur3 SINE Alu 6 136 -13 5 1000 549 0 0 0 chr9 54521614 54521675 -69554497 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1000 324 0 0 0 chr9 54521995 54522031 -69554141 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1000 290 274 104 0 chr9 54522329 54522464 -69553708 - MER113A DNA MER1_type -80 234 86 6 1000 252 21 64 0 chr9 54522495 54522542 -69553630 - B2_Mm1t SINE B2 -2 191 142 6 1000 1206 68 6 6 chr9 54522573 54522735 -69553437 - B2_Mm1t SINE B2 -29 164 3 6 1000 468 203 0 0 chr9 54522879 54522953 -69553219 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1000 998 197 133 40 chr9 54522953 54523328 -69552844 - RMER17C LTR ERVK 0 410 1 6 1000 468 203 0 0 chr9 54523328 54523381 -69552791 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1000 856 179 115 86 chr9 54523381 54523625 -69552547 - Lx8 LINE L1 -142 7331 7081 6 1000 296 304 38 38 chr9 54523940 54524046 -69552126 - PB1D10 SINE Alu 0 117 12 6 1000 454 270 43 73 chr9 54523967 54524131 -69552041 - ID_B1 SINE B4 -51 173 15 6 1000 201 74 0 0 chr9 54524274 54524301 -69551871 + (TTC)n Simple_repeat Simple_repeat 1 27 0 6 1000 344 286 0 0 chr9 54525552 54525643 -69550529 + PB1 SINE Alu 30 120 -7 7 1000 255 61 0 0 chr9 54525644 54525677 -69550495 + (CAAT)n Simple_repeat Simple_repeat 3 35 0 7 1000 494 272 136 0 chr9 54525688 54525835 -69550337 + B3 SINE B2 35 201 -15 7 15 773 136 42 0 chr9 54525900 54526018 -69550154 - B3 SINE B2 -90 126 4 7 1001 342 0 0 0 chr9 54526019 54526057 -69550115 + (TATG)n Simple_repeat Simple_repeat 3 40 0 7 1001 686 279 21 31 chr9 54526078 54526270 -69549902 + B3 SINE B2 27 216 0 7 1001 4266 142 84 81 chr9 54528234 54529133 -69547039 + RMER19B LTR ERVK 1 902 0 7 1001 21 0 0 0 chr9 54529482 54529503 -69546669 + AT_rich Low_complexity Low_complexity 1 21 0 7 1001 630 219 64 18 chr9 54529509 54529682 -69546490 - ORR1D1 LTR MaLR 0 378 201 7 1001 226 59 0 0 chr9 54529935 54529969 -69546203 - B1_Mus2 SINE Alu -73 74 41 7 1001 234 0 0 0 chr9 54530072 54530098 -69546074 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1001 1874 9 0 0 chr9 54530120 54530331 -69545841 - L1Md_A LINE L1 0 6582 6372 8 1001 203 331 69 13 chr9 54530486 54530645 -69545527 - L2c LINE L2 -216 3171 3004 8 1001 982 255 122 41 chr9 54530708 54531027 -69545145 - ORR1D2 LTR MaLR -4 366 22 8 1001 2516 166 72 10 chr9 54531037 54531525 -69544647 - RLTR11A2 LTR ERVK -9 518 1 8 1001 611 289 60 44 chr9 54531675 54531925 -69544247 + MLT1D LTR MaLR 161 414 -91 8 1001 432 0 0 0 chr9 54531966 54532014 -69544158 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1001 781 225 0 0 chr9 54532023 54532165 -69544007 - RSINE1 SINE B4 -20 145 4 8 1001 260 351 64 0 chr9 54532171 54532265 -69543907 + MLT1D LTR MaLR 405 504 -1 8 1001 249 252 147 29 chr9 54532324 54532426 -69543746 - L2b LINE L2 -5 3370 3257 8 1001 528 30 0 0 chr9 54532539 54532605 -69543567 + (TC)n Simple_repeat Simple_repeat 1 66 0 8 1001 450 0 0 0 chr9 54532605 54532654 -69543518 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1001 332 209 29 15 chr9 54533080 54533148 -69543024 + ID4_ SINE ID 1 69 -14 9 1001 1154 169 75 0 chr9 54533152 54533353 -69542819 + B3 SINE B2 1 216 0 9 1001 238 257 67 67 chr9 54533626 54533701 -69542471 - ID4_ SINE ID -3 80 6 9 1001 217 286 0 108 chr9 54533824 54533926 -69542246 + MIR3 SINE MIR 81 171 -37 9 1001 356 212 15 0 chr9 54533940 54534006 -69542166 + ID SINE ID 5 71 -153 9 1001 300 331 154 23 chr9 54534143 54534403 -69541769 + RMER5 LTR ERV1 141 434 -100 9 1001 599 278 33 53 chr9 54534451 54534596 -69541576 + RSINE1 SINE B4 13 155 -10 9 1001 378 0 0 0 chr9 54534596 54534638 -69541534 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1001 2204 84 21 53 chr9 54534651 54534990 -69541182 + L1_Mur1 LINE L1 4866 5193 -693 9 1001 248 301 163 70 chr9 54535233 54535381 -69540791 + MIRb SINE MIR 2 164 -112 1 1001 263 287 78 19 chr9 54536136 54536239 -69539933 + PB1D10 SINE Alu 2 110 -7 1 1001 297 281 0 2 chr9 54536230 54536302 -69539870 + ID4 SINE ID 16 86 -66 1 1001 234 267 192 40 chr9 54536399 54536524 -69539648 + L1ME3 LINE L1 6016 6159 -3 1 1001 426 154 0 0 chr9 54536752 54536830 -69539342 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1001 780 279 155 10 chr9 54537249 54537546 -69538626 - MTEa LTR MaLR -38 341 2 1 1001 198 91 0 0 chr9 54537744 54537777 -69538395 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1001 1256 27 7 0 chr9 54537784 54537930 -69538242 - B1_Mus1 SINE Alu 0 148 2 1 1001 820 120 17 0 chr9 54538226 54538343 -69537829 - B1_Mur2 SINE Alu -5 144 26 1 1001 609 281 6 53 chr9 54539624 54539793 -69536379 - RSINE1 SINE B4 -2 163 3 1 1001 534 342 39 97 chr9 54540453 54540520 -69535652 - B4A SINE B4 -2 290 226 1 1001 700 191 35 14 chr9 54540520 54540663 -69535509 - B1_Mus1 SINE Alu -1 147 2 1 1001 534 342 39 97 chr9 54540663 54540903 -69535269 - B4A SINE B4 -67 225 1 1 1001 238 255 224 25 chr9 54540954 54541115 -69535057 - MIRb SINE MIR -23 245 53 1 1001 357 268 27 40 chr9 54541219 54541367 -69534805 + L1MA10 LINE L1 6187 6332 -2 1 1001 541 287 66 96 chr9 54541378 54541572 -69534600 + Zaphod DNA Tip100 3346 3545 -486 1 1001 1169 69 0 14 chr9 54541572 54541719 -69534453 + B1_Mus1 SINE Alu 2 146 -2 1 1001 541 287 66 96 chr9 54541719 54541859 -69534313 + Zaphod DNA Tip100 3546 3670 -361 1 1001 744 207 14 0 chr9 54541880 54542009 -69534163 + B1_Mus1 SINE Alu 6 136 -12 1 1001 777 98 0 0 chr9 54542009 54542121 -69534051 + (GAAA)n Simple_repeat Simple_repeat 1 112 0 1 1001 195 309 102 9 chr9 54542419 54542527 -69533645 + L2b LINE L2 3244 3361 -14 1 1001 286 279 10 41 chr9 54542892 54542989 -69533183 + CT-rich Low_complexity Low_complexity 1 94 0 1 1001 259 250 0 0 chr9 54543001 54543053 -69533119 - ID4_ SINE ID -11 72 21 1 1001 898 251 96 8 chr9 54543078 54543327 -69532845 - B4A SINE B4 -16 276 6 1 1001 263 220 78 108 chr9 54543329 54543431 -69532741 - PB1 SINE Alu -7 120 22 1 1001 301 262 11 45 chr9 54543460 54543548 -69532624 - MIR SINE MIR -60 148 64 1 1001 968 328 63 5 chr9 54544712 54545107 -69531065 - MER67A LTR ERV1 -5 538 121 1 1001 548 228 73 8 chr9 54545211 54545335 -69530837 + B1_Mur4 SINE Alu 19 150 0 1 1001 231 61 0 0 chr9 54545335 54545368 -69530804 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 1 1001 536 282 0 8 chr9 54545692 54545810 -69530362 + PB1D10 SINE Alu 1 117 0 1 1001 21 71 0 0 chr9 54547457 54547499 -69528673 + GC_rich Low_complexity Low_complexity 1 42 0 1 1001 1031 182 62 0 chr9 54548969 54549161 -69527011 - B3 SINE B2 -10 206 3 1 1001 193 29 59 0 chr9 54549597 54549631 -69526541 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1001 913 243 42 19 chr9 54550518 54550732 -69525440 + ID_B1 SINE B4 2 220 -4 1 1001 314 222 87 48 chr9 54550841 54550945 -69525227 - PB1D7 SINE Alu 0 120 13 1 1001 419 311 62 35 chr9 54551624 54551851 -69524321 - B4 SINE B4 -59 233 1 1 1001 662 232 37 52 chr9 54551877 54552068 -69524104 + B3A SINE B2 1 188 -10 1 1001 222 37 0 0 chr9 54552097 54552124 -69524048 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1001 506 237 25 34 chr9 54552671 54552789 -69523383 + B1F SINE Alu 32 148 -1 1 1001 251 241 12 35 chr9 54553274 54553360 -69522812 - L1MC4 LINE L1 -504 7538 7455 1 1001 210 71 0 0 chr9 54553836 54553864 -69522308 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1001 21 0 0 0 chr9 54554057 54554078 -69522094 + AT_rich Low_complexity Low_complexity 1 21 0 1 1001 306 0 0 0 chr9 54554100 54554134 -69522038 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1001 479 263 105 0 chr9 54554149 54554263 -69521909 - RSINE1 SINE B4 -36 129 4 1 1001 402 252 10 20 chr9 54554474 54554575 -69521597 + PB1D10 SINE Alu 13 112 -5 1 1001 237 160 20 0 chr9 54554908 54554958 -69521214 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1001 330 283 0 62 chr9 54555005 54555118 -69521054 - ID_B1 SINE B4 -8 216 111 1 1001 1058 123 117 0 chr9 54557441 54557612 -69518560 - B2_Mm1t SINE B2 -1 192 2 1 1001 555 212 143 31 chr9 54558694 54558855 -69517317 - B3A SINE B2 -18 180 2 1 1001 218 320 113 16 chr9 54558885 54559009 -69517163 - RSINE1 SINE B4 -29 136 1 1 1001 357 368 0 0 chr9 54559808 54559914 -69516258 + PB1D10 SINE Alu 1 106 -11 1 1001 284 277 268 0 chr9 54559945 54560057 -69516115 + ID_B1 SINE B4 4 145 -79 1 1001 441 0 0 0 chr9 54560774 54560823 -69515349 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1001 877 140 186 36 chr9 54566080 54566273 -69509899 - URR1A DNA MER1_type 0 226 5 1 1001 319 245 133 0 chr9 54566360 54566458 -69509714 + PB1D7 SINE Alu 1 111 -9 1 1001 215 273 132 35 chr9 54566518 54566632 -69509540 - B1F2 SINE Alu -23 126 2 1 1001 514 292 30 8 chr9 54567631 54567762 -69508410 - B1_Mur1 SINE Alu -14 135 2 1 1001 524 230 160 31 chr9 54567785 54567958 -69508214 - B3 SINE B2 -11 184 1 1 1001 856 153 0 71 chr9 54568574 54568729 -69507443 + B1_Mur1 SINE Alu 6 149 0 1 1001 2527 69 6 3 chr9 54568733 54569083 -69507089 + L1_Mus3 LINE L1 6261 6611 -27 1 1001 600 238 137 40 chr9 54569310 54569485 -69506687 - B3A SINE B2 0 198 7 1 1001 433 301 57 8 chr9 54570942 54571066 -69505106 + B3A SINE B2 30 159 -39 1 1001 228 67 0 0 chr9 54571072 54571102 -69505070 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1001 227 200 0 54 chr9 54571553 54571627 -69504545 + GA-rich Low_complexity Low_complexity 3 72 0 1 1001 468 224 118 21 chr9 54572464 54572651 -69503521 + L1M5 LINE L1 5438 5642 -522 1 1001 892 221 46 29 chr9 54572684 54572922 -69503250 + MT2A LTR ERVL 281 522 -11 1 1001 655 82 41 0 chr9 54573092 54573190 -69502982 + B2_Mm1a SINE B2 91 192 -1 1 1001 459 229 20 20 chr9 54573797 54573895 -69502277 + PB1D7 SINE Alu 23 120 0 1 1001 552 30 0 0 chr9 54574563 54574629 -69501543 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 1 1001 391 299 35 35 chr9 54575132 54575274 -69500898 + MER46C DNA MER2_type 1 142 -196 1 1001 327 130 0 0 chr9 54575765 54575819 -69500353 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1001 260 292 0 58 chr9 54576636 54576705 -69499467 + ID_B1 SINE B4 90 154 -70 1 1001 212 332 33 57 chr9 54576705 54576762 -69499410 + PB1D10 SINE Alu 9 120 0 1 1001 231 336 105 1 chr9 54576846 54576955 -69499217 - MIRb SINE MIR -114 154 34 1 1001 1108 82 134 0 chr9 54577740 54577911 -69498261 - B2_Mm2 SINE B2 0 195 2 1 1001 537 191 0 0 chr9 54577993 54578103 -69498069 + (TA)n Simple_repeat Simple_repeat 2 111 0 1 1001 239 274 20 0 chr9 54578127 54578178 -69497994 - ID SINE ID -170 54 3 1 1001 252 278 74 30 chr9 54578178 54578272 -69497900 - PB1D10 SINE Alu -49 100 5 1 1001 288 280 106 41 chr9 54578655 54578778 -69497394 - ID_B1 SINE B4 -2 222 92 1 1001 243 271 282 27 chr9 54579842 54579952 -69496220 - RSINE1 SINE B4 -2 163 26 1 1001 1150 280 121 58 chr9 54580076 54580580 -69495592 + MER82 DNA MER2_type 10 545 -108 1 1001 22 0 0 0 chr9 54580580 54580602 -69495570 + AT_rich Low_complexity Low_complexity 1 22 0 1 1001 219 103 25 25 chr9 54580816 54580856 -69495316 + PB1D10 SINE Alu 76 115 -2 1 1001 508 263 71 18 chr9 54580875 54581045 -69495127 - Charlie4a DNA MER1_type -304 204 26 1 1001 253 381 52 7 chr9 54581471 54581606 -69494566 - MIR SINE MIR -18 244 104 1 1001 234 128 0 0 chr9 54582525 54582564 -69493608 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1001 607 304 27 0 chr9 54582736 54582884 -69493288 - RSINE1 SINE B4 -3 162 11 1 1001 288 325 12 0 chr9 54582894 54582974 -69493198 - ID4 SINE ID 0 83 3 1 1001 400 266 32 77 chr9 54582979 54583134 -69493038 - B1F SINE Alu -1 148 1 1 1001 668 320 154 20 chr9 54583395 54583800 -69492372 - Charlie4a DNA MER1_type -13 495 37 1 1001 563 0 0 15 chr9 54584543 54584611 -69491561 + (TTCTC)n Simple_repeat Simple_repeat 5 71 0 1 1001 285 225 0 0 chr9 54584615 54584704 -69491468 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1001 626 250 0 35 chr9 54584984 54585125 -69491047 + ID_B1 SINE B4 88 223 -1 1 1001 1534 72 0 0 chr9 54585233 54585426 -69490746 - B2_Mm1a SINE B2 0 193 1 1 1001 486 277 97 9 chr9 54585679 54585792 -69490380 - RSINE1 SINE B4 -40 125 3 1 1001 240 215 133 51 chr9 54586458 54586556 -69489616 + MIRc SINE MIR 85 190 -78 1 1001 222 160 96 39 chr9 54586896 54586948 -69489224 - L2c LINE L2 -48 3339 3285 1 1001 884 234 29 29 chr9 54587284 54587491 -69488681 + B3 SINE B2 1 207 -9 1 1001 781 194 112 30 chr9 54587930 54588127 -69488045 + B3 SINE B2 4 216 0 1 1001 201 208 42 0 chr9 54588179 54588227 -69487945 - L2 LINE L2 -2905 514 465 1 1001 890 162 7 26 chr9 54588856 54589008 -69487164 - B1_Mur4 SINE Alu -1 149 1 1 1001 255 279 0 81 chr9 54589028 54589102 -69487070 + MTD LTR MaLR 88 155 -264 1 1001 690 113 120 17 chr9 54589121 54589238 -69486934 + B1_Mus1 SINE Alu 1 129 -19 2 1001 468 210 101 68 chr9 54589253 54589401 -69486771 + MTD LTR MaLR 267 419 0 1 1001 355 236 65 19 chr9 54589493 54589601 -69486571 + MT2A LTR ERVL 1 113 -420 2 1001 565 300 13 31 chr9 54590453 54590680 -69485492 - RMER15 LTR ERVL -17 558 336 2 1001 3131 53 35 27 chr9 54590781 54591185 -69484987 - MTB_Mm LTR MaLR 0 407 1 2 1001 225 0 0 0 chr9 54592851 54592876 -69483296 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1001 917 190 0 0 chr9 54592877 54593019 -69483153 - B1_Mur4 SINE Alu -7 143 2 2 1001 207 0 0 0 chr9 54593258 54593281 -69482891 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1001 182 150 25 0 chr9 54594825 54594865 -69481307 + GA-rich Low_complexity Low_complexity 2 42 0 2 1001 311 138 30 15 chr9 54595063 54595129 -69481043 + B4 SINE B4 2 68 -224 2 1001 1450 61 0 0 chr9 54595136 54595317 -69480855 + B2_Mm1t SINE B2 12 192 -1 2 1001 258 297 12 86 chr9 54595318 54595399 -69480773 + RSINE1 SINE B4 82 156 -9 2 1001 715 257 146 19 chr9 54595646 54595852 -69480320 - B4A SINE B4 -4 288 57 2 1001 790 177 7 14 chr9 54596034 54596177 -69479995 + B1_Mur2 SINE Alu 1 142 -7 2 1001 359 278 46 29 chr9 54596268 54596442 -69479730 - L1M5 LINE L1 -1438 4708 4532 2 1001 509 300 8 30 chr9 54596802 54596936 -69479236 + B1F SINE Alu 2 132 -17 2 1001 430 260 8 45 chr9 54596924 54597056 -69479116 + B4A SINE B4 57 286 -6 2 1001 291 282 62 50 chr9 54597166 54597291 -69478881 - MIRb SINE MIR -66 202 78 2 1001 209 130 71 36 chr9 54597387 54597443 -69478729 + C-rich Low_complexity Low_complexity 3 60 0 2 1001 431 257 19 9 chr9 54599109 54599215 -69476957 - RSINE1 SINE B4 -50 115 9 2 1001 198 224 102 0 chr9 54599290 54599339 -69476833 + MIR SINE MIR 98 151 -57 2 1001 202 345 209 0 chr9 54601180 54601290 -69474882 - L2b LINE L2 -6 3369 3237 2 1001 259 384 48 0 chr9 54601321 54601446 -69474726 + MIRb SINE MIR 47 177 -91 2 1001 423 0 0 0 chr9 54601957 54602004 -69474168 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1001 359 301 19 37 chr9 54602273 54602380 -69473792 + MER81 DNA AcHobo 10 114 0 2 1001 406 208 13 0 chr9 54602456 54602533 -69473639 - B4 SINE B4 -214 78 1 2 1001 619 219 190 0 chr9 54602559 54602696 -69473476 - RSINE1 SINE B4 0 165 3 2 1001 237 307 22 33 chr9 54602702 54602793 -69473379 - B1_Mus1 SINE Alu -41 107 18 2 1001 258 353 27 19 chr9 54603226 54603350 -69472822 - MIRc SINE MIR -141 127 4 2 1001 349 308 106 33 chr9 54604067 54604218 -69471954 + MER5B DNA MER1_type 6 167 -11 2 1001 3405 35 2 2 chr9 54604245 54604641 -69471531 - MTA_Mm LTR MaLR 0 396 1 2 1001 323 292 21 10 chr9 54604652 54604749 -69471423 - MER5A1 DNA MER1_type -53 113 16 2 1001 213 65 0 0 chr9 54605070 54605101 -69471071 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1001 440 251 95 121 chr9 54605135 54605366 -69470806 - MLT1B LTR MaLR -1 389 165 2 1001 203 167 28 0 chr9 54605366 54605402 -69470770 + CT-rich Low_complexity Low_complexity 1 37 0 2 1001 390 42 0 0 chr9 54605431 54605479 -69470693 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1001 702 251 47 160 chr9 54605500 54605660 -69470512 - B4A SINE B4 -65 227 82 2 1001 1174 83 0 0 chr9 54605660 54605804 -69470368 - B1_Mus2 SINE Alu -2 145 2 2 1001 702 251 47 160 chr9 54605804 54605899 -69470273 - B4A SINE B4 -211 81 1 2 1001 361 326 22 50 chr9 54605899 54606078 -69470094 - MLT1B LTR MaLR -212 178 5 2 1001 341 247 24 12 chr9 54606168 54606250 -69469922 - ID4_ SINE ID 0 83 1 2 1001 348 272 47 19 chr9 54606545 54606676 -69469496 + MIR SINE MIR 26 162 -106 2 1001 202 269 14 69 chr9 54608273 54608345 -69467827 + L2c LINE L2 3320 3387 0 2 1001 210 85 0 106 chr9 54608384 54608450 -69467722 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 1001 3051 123 17 26 chr9 54608852 54609320 -69466852 - RMER4A LTR ERVK -2 464 1 2 1001 465 244 75 51 chr9 54610146 54610400 -69465772 - B4A SINE B4 0 292 2 2 1001 506 247 210 36 chr9 54610760 54611008 -69465164 + B4A SINE B4 2 292 0 2 1001 180 296 118 34 chr9 54613034 54613153 -69463019 + MIRb SINE MIR 19 147 -121 2 1001 26 50 0 0 chr9 54613872 54613912 -69462260 + GC_rich Low_complexity Low_complexity 1 40 0 2 1001 773 113 38 6 chr9 54614098 54614258 -69461914 + GA-rich Low_complexity Low_complexity 2 166 0 2 1001 269 258 110 55 chr9 54614262 54614389 -69461783 - B1F SINE Alu -7 142 9 2 1001 214 50 0 48 chr9 54614426 54614468 -69461704 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 2 1001 299 259 62 0 chr9 54614597 54614678 -69461494 - PB1D7 SINE Alu -2 118 33 2 1001 400 286 10 0 chr9 54614763 54614861 -69461311 + PB1D9 SINE Alu 1 99 -21 2 1001 188 86 29 0 chr9 54615084 54615119 -69461053 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2 1001 303 198 1 166 chr9 54615134 54615251 -69460921 + BC1_Mm scRNA scRNA 3 102 -50 2 1001 207 0 0 0 chr9 54615609 54615632 -69460540 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1001 234 0 0 0 chr9 54616926 54616952 -69459220 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2 1001 865 175 15 0 chr9 54616954 54617091 -69459081 - B1_Mus2 SINE Alu -7 140 2 2 1001 393 265 29 0 chr9 54617175 54617270 -69458902 + PB1D7 SINE Alu 12 109 -11 2 1001 259 45 22 22 chr9 54617270 54617316 -69458856 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1001 25 0 0 0 chr9 54619014 54619039 -69457133 + AT_rich Low_complexity Low_complexity 1 25 0 2 1001 926 206 74 15 chr9 54619201 54619403 -69456769 - B3 SINE B2 0 216 3 2 1001 387 0 0 0 chr9 54619413 54619456 -69456716 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 2 1001 193 250 105 48 chr9 54619635 54619740 -69456432 - MIR3 SINE MIR -4 204 94 2 1001 1016 288 78 25 chr9 54619828 54620149 -69456023 - MER2 DNA MER2_type -1 344 7 2 1001 586 248 0 43 chr9 54621372 54621511 -69454661 + B1_Mur2 SINE Alu 1 133 -16 2 1001 628 218 16 0 chr9 54621773 54621897 -69454275 + ID_B1 SINE B4 1 126 -98 2 1001 630 39 0 0 chr9 54623314 54623391 -69452781 + (TTTTC)n Simple_repeat Simple_repeat 3 79 0 2 1001 695 248 115 41 chr9 54623440 54623746 -69452426 - ORR1D2 LTR MaLR 0 374 47 2 1001 279 226 229 31 chr9 54623753 54623849 -69452323 - RSINE1 SINE B4 -35 130 16 2 1001 1124 62 0 40 chr9 54623905 54623922 -69452250 - B1_Mus1 SINE Alu -1 147 136 2 1001 285 51 0 0 chr9 54623922 54623961 -69452211 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1001 1124 62 0 40 chr9 54623961 54624095 -69452077 - B1_Mus1 SINE Alu -13 135 2 2 1001 696 241 80 45 chr9 54624381 54624668 -69451504 + L1MB8 LINE L1 5838 6134 -44 2 1001 910 224 38 19 chr9 54625164 54625373 -69450799 + B3 SINE B2 4 216 0 2 1001 926 110 0 14 chr9 54625400 54625527 -69450645 + B1_Mus1 SINE Alu 10 136 -12 2 1001 473 0 18 0 chr9 54625527 54625584 -69450588 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 2 1001 184 226 35 86 chr9 54625677 54625735 -69450437 + L3 LINE CR1 3502 3556 -933 2 1001 341 282 68 66 chr9 54626239 54626452 -69449720 + MLT1L LTR MaLR 100 396 -214 2 1001 317 228 152 0 chr9 54626650 54626742 -69449430 + PB1D10 SINE Alu 8 113 -4 2 1001 929 231 177 20 chr9 54626769 54627069 -69449103 - MTD LTR MaLR -22 397 51 2 1001 436 339 17 51 chr9 54627129 54627306 -69448866 - LTR89 LTR ERVL? -194 685 515 2 1001 485 237 100 73 chr9 54627749 54628049 -69448123 - L1MC5 LINE L1 -51 7910 7603 2 1001 366 236 0 0 chr9 54628265 54628337 -69447835 + ID4_ SINE ID 2 73 -10 2 1001 1299 67 6 9 chr9 54628337 54628671 -69447501 + (CA)n Simple_repeat Simple_repeat 1 332 0 2 1001 641 203 8 17 chr9 54628782 54628902 -69447270 + PB1D7 SINE Alu 1 119 -1 2 1001 831 176 44 0 chr9 54628920 54629056 -69447116 + B1_Mus2 SINE Alu 1 142 -5 2 1001 435 206 9 70 chr9 54629172 54629279 -69446893 - PB1 SINE Alu -31 118 20 2 1001 486 208 0 20 chr9 54629301 54629399 -69446773 - ID_B1 SINE B4 0 224 129 2 1001 358 185 46 0 chr9 54629855 54629920 -69446252 - 5S rRNA rRNA -31 90 23 2 1001 249 313 33 50 chr9 54629969 54630090 -69446082 - LTR84b LTR ERVL -579 182 64 2 1001 189 74 0 0 chr9 54630239 54630266 -69445906 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1001 575 208 28 0 chr9 54631033 54631139 -69445033 + PB1D10 SINE Alu 7 115 -2 2 1001 509 325 13 7 chr9 54631140 54631292 -69444880 + RSINE1 SINE B4 1 153 -12 2 1001 198 0 0 0 chr9 54631337 54631359 -69444813 + (TAA)n Simple_repeat Simple_repeat 3 24 0 2 1001 360 208 0 89 chr9 54631494 54631573 -69444599 + B1_Mur4 SINE Alu 36 107 -42 2 1001 302 259 44 53 chr9 54631583 54631697 -69444475 + MT2B LTR ERVL 152 264 -337 2 1001 790 21 0 0 chr9 54631639 54631732 -69444440 + B1_Mus2 SINE Alu 55 147 0 2 1001 609 14 0 0 chr9 54632574 54632644 -69443528 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1001 477 0 0 0 chr9 54633616 54633669 -69442503 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 2 1001 206 284 83 10 chr9 54633669 54633765 -69442407 + L2c LINE L2 3056 3158 -229 2 1001 718 333 131 50 chr9 54633769 54634272 -69441900 + MLT1G3 LTR MaLR 12 582 -13 2 1001 203 281 71 20 chr9 54635130 54635228 -69440944 - MIRb SINE MIR -44 224 122 2 1001 594 256 15 8 chr9 54636083 54636213 -69439959 + ID_B1 SINE B4 2 132 -92 2 1001 1231 61 0 0 chr9 54636213 54636360 -69439812 + B1_Mus1 SINE Alu 2 148 0 3 1001 502 15 30 0 chr9 54636360 54636427 -69439745 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 3 1001 251 240 179 39 chr9 54636427 54636505 -69439667 + ID_B1 SINE B4 130 218 -6 2 1001 633 114 0 26 chr9 54636505 54636622 -69439550 + (GGA)n Simple_repeat Simple_repeat 1 114 0 3 1001 1326 78 0 0 chr9 54636622 54636802 -69439370 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1001 736 206 22 28 chr9 54636974 54637167 -69439005 - B3 SINE B2 -5 190 1 3 1001 359 192 223 7 chr9 54637245 54637345 -69438827 + B4A SINE B4 122 233 -59 3 1001 797 295 95 4 chr9 54637346 54637608 -69438564 + B4A SINE B4 1 286 -6 3 1001 292 176 59 0 chr9 54637694 54637745 -69438427 + B4A SINE B4 217 270 -22 3 1001 282 29 0 0 chr9 54637745 54637780 -69438392 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1001 2531 130 38 15 chr9 54637834 54638225 -69437947 + MTC LTR MaLR 1 400 -21 3 1001 229 336 55 23 chr9 54638229 54638357 -69437815 + LTR16A LTR ERVL 57 188 -263 3 1001 412 277 26 45 chr9 54638333 54638488 -69437684 + LTR16A LTR ERVL 290 441 -10 3 1001 797 247 125 4 chr9 54638574 54638822 -69437350 - Charlie4a DNA MER1_type -57 451 174 3 1001 391 159 0 0 chr9 54638844 54638907 -69437265 - ID_B1 SINE B4 0 224 162 3 1001 244 193 0 123 chr9 54638909 54638961 -69437211 - RSINE1 SINE B4 -43 122 75 3 1001 296 24 24 0 chr9 54638961 54639002 -69437170 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1001 244 193 0 123 chr9 54639002 54639014 -69437158 - RSINE1 SINE B4 -91 74 66 3 1001 398 139 14 0 chr9 54639055 54639127 -69437045 + GA-rich Low_complexity Low_complexity 3 75 0 3 1001 258 244 11 68 chr9 54639127 54639215 -69436957 + B3A SINE B2 2 84 -114 3 1001 234 294 10 98 chr9 54639215 54639229 -69436943 + RSINE1 SINE B4 3 95 -70 3 1001 24 0 0 0 chr9 54639269 54639293 -69436879 + AT_rich Low_complexity Low_complexity 1 24 0 3 1001 8400 184 40 12 chr9 54639334 54642049 -69434123 - Lx5 LINE L1 -35 7023 4280 3 1001 258 32 0 0 chr9 54642050 54642081 -69434091 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 3 1001 214 125 50 0 chr9 54642081 54642121 -69434051 + T-rich Low_complexity Low_complexity 4 45 0 3 1001 453 241 68 17 chr9 54642133 54642251 -69433921 + B1F1 SINE Alu 1 124 -25 3 1001 300 258 63 23 chr9 54642376 54642531 -69433641 + MIRc SINE MIR 82 242 -26 3 1001 200 320 24 71 chr9 54643157 54643241 -69432931 - L2 LINE L2 -2864 555 476 3 1001 328 207 0 0 chr9 54643294 54643352 -69432820 + PB1D10 SINE Alu 59 116 -1 3 1001 208 222 0 0 chr9 54643365 54643401 -69432771 + polypurine Low_complexity Low_complexity 1 36 0 3 1001 434 277 100 0 chr9 54643402 54643532 -69432640 + ID_B1 SINE B4 80 222 -2 3 1001 486 88 0 0 chr9 54643557 54643625 -69432547 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 1001 509 196 31 10 chr9 54643648 54643746 -69432426 + PB1D10 SINE Alu 18 117 0 3 1001 875 141 19 19 chr9 54643878 54644037 -69432135 - ORR1C2 LTR MaLR -225 159 1 3 1001 399 164 0 0 chr9 54644109 54644170 -69432002 - B4A SINE B4 -66 226 166 3 1001 1343 102 32 0 chr9 54644275 54644462 -69431710 + B2_Mm1t SINE B2 1 193 0 3 1001 198 0 0 0 chr9 54644633 54644655 -69431517 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1001 573 304 30 30 chr9 54645009 54645175 -69430997 - B4A SINE B4 -126 166 1 3 1001 185 286 0 0 chr9 54645373 54645415 -69430757 + L2 LINE L2 1320 1361 -2058 3 1001 1335 82 49 0 chr9 54645575 54645758 -69430414 - B2_Mm2 SINE B2 -3 192 1 3 1001 536 0 16 0 chr9 54645912 54645976 -69430196 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 3 1001 437 172 22 22 chr9 54646114 54646203 -69429969 + MTD LTR MaLR 1 89 -330 3 1001 450 248 124 29 chr9 54648321 54648458 -69427714 - MER5A1 DNA MER1_type -3 163 14 3 1001 330 277 149 18 chr9 54648537 54648651 -69427521 - MER3 DNA MER1_type -8 201 73 3 1001 946 209 118 0 chr9 54648771 54648958 -69427214 + ID_B1 SINE B4 6 214 -10 3 1001 414 0 0 0 chr9 54648971 54649017 -69427155 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 1001 218 379 21 35 chr9 54649770 54649915 -69426257 + MIRc SINE MIR 9 151 -117 3 1001 333 0 0 0 chr9 54649915 54649952 -69426220 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1001 243 0 0 0 chr9 54649952 54649978 -69426194 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1001 278 357 61 38 chr9 54650043 54650409 -69425763 - L2c LINE L2 -87 3288 2911 3 1001 863 264 42 32 chr9 54651255 54651540 -69424632 + B4A SINE B4 3 290 -2 3 1001 601 196 0 9 chr9 54651542 54651770 -69424402 + (CA)n Simple_repeat Simple_repeat 1 225 0 3 1001 475 337 175 10 chr9 54652578 54652869 -69423303 + L2a LINE L2 2970 3308 -118 3 1001 292 293 18 0 chr9 54652928 54653026 -69423146 - MIR SINE MIR -99 177 70 3 1001 507 33 0 0 chr9 54653036 54653097 -69423075 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1001 386 266 64 0 chr9 54653108 54653202 -69422970 - PB1D7 SINE Alu -7 113 14 3 1001 282 261 279 25 chr9 54653202 54653220 -69422952 - B4A SINE B4 -58 186 82 3 1001 420 37 0 0 chr9 54653230 54653284 -69422888 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1001 574 184 19 0 chr9 54653284 54653387 -69422785 - RSINE1 SINE B4 -18 147 43 3 1001 361 320 0 46 chr9 54653625 54653733 -69422439 + PB1D10 SINE Alu 1 103 -14 3 1001 1068 93 106 0 chr9 54654629 54654790 -69421382 - ORR1B1 LTR MaLR -210 184 7 3 1001 376 281 45 97 chr9 54654795 54654839 -69421333 - MIRc SINE MIR -76 192 156 3 1001 1445 75 11 0 chr9 54654839 54655025 -69421147 - B2_Mm1t SINE B2 -2 191 4 3 1001 376 281 46 85 chr9 54655025 54655150 -69421022 - MIRc SINE MIR -113 155 34 3 1001 417 306 21 56 chr9 54655226 54655360 -69420812 + B4A SINE B4 1 129 -163 3 1001 892 117 83 41 chr9 54655360 54655529 -69420643 + RMER2 LTR ERV1 1 176 -391 3 1001 192 111 0 0 chr9 54655584 54655620 -69420552 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1001 435 294 88 38 chr9 54656421 54656580 -69419592 + B4A SINE B4 8 174 -118 3 1001 572 111 10 0 chr9 54656599 54656698 -69419474 + (TG)n Simple_repeat Simple_repeat 2 101 0 3 1001 573 212 18 9 chr9 54656732 54656846 -69419326 - RSINE1 SINE B4 -47 118 4 3 1002 21 0 0 0 chr9 54657035 54657056 -69419116 + AT_rich Low_complexity Low_complexity 1 21 0 3 1002 1208 62 7 0 chr9 54657058 54657204 -69418968 + B1_Mus2 SINE Alu 1 147 0 3 1002 441 0 0 0 chr9 54657218 54657267 -69418905 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1002 931 295 32 58 chr9 54657269 54657546 -69418626 + B4 SINE B4 19 288 -4 3 1002 300 241 0 0 chr9 54658431 54658510 -69417662 + T-rich Low_complexity Low_complexity 1 79 0 3 1002 194 244 22 0 chr9 54658510 54658555 -69417617 - MIR SINE MIR -71 191 146 3 1002 185 302 71 85 chr9 54658673 54658814 -69417358 - MIRb SINE MIR -109 159 21 3 1002 324 0 0 0 chr9 54658897 54658933 -69417239 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1002 1185 67 0 0 chr9 54658936 54659100 -69417072 + (TG)n Simple_repeat Simple_repeat 2 165 0 3 1002 808 314 44 13 chr9 54659135 54659364 -69416808 - B4A SINE B4 -52 240 5 3 1002 1170 253 35 14 chr9 54659679 54659964 -69416208 + ORR1E LTR MaLR 8 298 -61 3 1002 481 252 29 0 chr9 54660717 54660820 -69415352 - PB1D7 SINE Alu -5 115 10 3 1002 394 229 121 168 chr9 54661088 54661261 -69414911 + RSINE1 SINE B4 1 165 0 3 1002 235 271 17 17 chr9 54661325 54661385 -69414787 + tRNA-Gly-GGG tRNA tRNA 4 63 -11 3 1002 335 281 0 0 chr9 54661332 54661396 -69414776 + ID4_ SINE ID 18 81 -2 3 1002 444 170 14 29 chr9 54661402 54661541 -69414631 + (TA)n Simple_repeat Simple_repeat 1 137 0 3 1002 252 86 0 0 chr9 54661549 54661584 -69414588 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1002 692 316 5 82 chr9 54661584 54661791 -69414381 - ID_B1 SINE B4 -28 196 6 3 1002 276 396 77 10 chr9 54662008 54662217 -69413955 + LTR16D LTR ERVL 35 257 -394 3 1002 423 275 37 0 chr9 54662311 54662420 -69413752 + MER20 DNA MER1_type 105 217 -2 3 1002 228 313 36 0 chr9 54662614 54662697 -69413475 + Kanga1 DNA Tc2 7 92 -1653 3 1002 253 376 24 0 chr9 54662782 54662867 -69413305 - ID_B1 SINE B4 -56 168 82 3 1002 375 60 0 0 chr9 54662878 54662928 -69413244 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1002 339 152 0 0 chr9 54662928 54663007 -69413165 + GA-rich Low_complexity Low_complexity 2 80 0 3 1002 587 270 139 48 chr9 54663333 54663634 -69412538 - ORR1E LTR MaLR 0 379 30 3 1002 263 286 0 35 chr9 54663756 54663843 -69412329 + MTEb LTR MaLR 283 366 -13 3 1002 425 269 107 65 chr9 54663862 54664077 -69412095 + Kanga1 DNA Tc2 1515 1738 -7 3 1002 494 303 33 45 chr9 54664088 54664311 -69411861 - MIR SINE MIR -27 241 16 3 1002 263 299 118 27 chr9 54664940 54665050 -69411122 + MIR3 SINE MIR 4 123 -85 3 1002 252 316 72 64 chr9 54665631 54665756 -69410416 + MIRb SINE MIR 116 241 -27 3 1002 380 203 13 39 chr9 54665901 54665978 -69410194 + B1F SINE Alu 46 120 -29 3 1002 493 219 147 17 chr9 54666062 54666178 -69409994 + ID_B1 SINE B4 86 216 -8 3 1002 247 297 33 83 chr9 54666324 54666445 -69409727 - MLT1M LTR MaLR -519 153 39 3 1002 9008 112 21 85 chr9 54666505 54668184 -69407988 + RLTR21 LTR ERVK 1 1572 0 3 1002 245 257 0 12 chr9 54668314 54668390 -69407782 - RLTR11A2 LTR ERVK -454 73 1 3 1002 238 232 0 97 chr9 54668430 54668492 -69407680 - MTB_Mm LTR MaLR -55 352 297 3 1002 229 232 18 0 chr9 54670142 54670198 -69405974 - B1_Mur2 SINE Alu 0 149 93 4 1002 629 228 135 23 chr9 54670364 54670556 -69405616 + RLTR20A2 LTR ERVK 186 479 -99 4 1002 321 26 0 0 chr9 54670556 54670594 -69405578 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1002 629 266 57 11 chr9 54670594 54670678 -69405494 + RLTR20A2 LTR ERVK 480 571 -7 4 1002 771 175 14 20 chr9 54670981 54671127 -69405045 - RLTR19C LTR ERVK 0 715 571 4 1002 304 111 32 0 chr9 54672263 54672326 -69403846 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1002 1281 160 72 0 chr9 54673246 54673496 -69402676 - RLTR19C LTR ERVK -238 268 1 4 1002 1038 224 178 54 chr9 54673496 54674017 -69402155 + MT2A LTR ERVL 8 489 -44 4 1002 216 135 57 19 chr9 54674024 54674077 -69402095 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 4 1002 780 162 1 2 chr9 54674237 54674372 -69401800 + B1_Mus1 SINE Alu 4 138 -12 4 1002 216 0 0 0 chr9 54674372 54674396 -69401776 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1002 431 319 148 16 chr9 54675603 54676165 -69400007 - L2a LINE L2 -17 3409 2763 4 1002 286 325 43 9 chr9 54676195 54676310 -69399862 - PB1 SINE Alu -2 125 7 4 1002 589 246 58 7 chr9 54676469 54676607 -69399565 - RSINE1 SINE B4 -8 157 13 4 1002 2518 141 21 38 chr9 54676607 54677079 -69399093 + RMER15 LTR ERVL 1 464 -111 4 1002 685 168 83 14 chr9 54677079 54677224 -69398948 + B3 SINE B2 2 156 -60 4 1002 353 214 59 12 chr9 54677260 54677345 -69398827 + RMER15 LTR ERVL 447 535 -40 4 1002 342 214 154 10 chr9 54677472 54677576 -69398596 - PB1 SINE Alu -6 121 3 4 1002 505 314 7 0 chr9 54677989 54678126 -69398046 - B1F1 SINE Alu -2 147 10 4 1002 245 281 0 0 chr9 54678075 54678132 -69398040 - B4A SINE B4 -147 145 89 4 1002 457 172 11 11 chr9 54678498 54678586 -69397586 + RMER15 LTR ERVL 448 535 -40 4 1002 683 135 87 0 chr9 54679016 54679142 -69397030 + URR1B DNA MER1_type 89 225 0 4 1002 268 222 0 31 chr9 54679181 54679246 -69396926 - B3 SINE B2 -1 215 153 4 1002 1162 74 0 0 chr9 54679361 54679509 -69396663 + B1_Mus1 SINE Alu 1 148 0 4 1002 243 188 0 0 chr9 54679511 54679559 -69396613 + GA-rich Low_complexity Low_complexity 2 49 0 4 1002 590 301 21 14 chr9 54680094 54680239 -69395933 - B3 SINE B2 -70 146 1 4 1002 310 250 14 0 chr9 54680284 54680356 -69395816 + ID4_ SINE ID 2 74 -9 4 1002 567 107 0 0 chr9 54680360 54680444 -69395728 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1002 324 264 2 22 chr9 54680444 54680524 -69395648 + ID_B1 SINE B4 78 145 -147 4 1002 1280 34 0 0 chr9 54680687 54680834 -69395338 + B1_Mus1 SINE Alu 1 147 -1 4 1002 197 95 0 87 chr9 54680861 54680887 -69395285 + (CAA)n Simple_repeat Simple_repeat 1 25 0 4 1002 570 223 121 15 chr9 54680887 54681019 -69395153 + B1_Mm SINE Alu 1 146 -1 4 1002 197 95 0 87 chr9 54681019 54681038 -69395134 + (CAA)n Simple_repeat Simple_repeat 2 18 0 4 1002 659 201 39 26 chr9 54681358 54681511 -69394661 - RSINE1 SINE B4 0 165 11 4 1002 2417 161 83 17 chr9 54681748 54682265 -69393907 + RLTR12A LTR ERVK 1 551 -17 4 1002 324 269 106 0 chr9 54682688 54682792 -69393380 - PB1 SINE Alu -8 119 5 4 1002 448 204 289 0 chr9 54682817 54682959 -69393213 - B3 SINE B2 -25 191 9 4 1002 2512 25 0 0 chr9 54683569 54683888 -69392284 + MURVY-LTR LTR ERV1 1 319 -200 4 1002 279 52 0 0 chr9 54683910 54683968 -69392204 + MURVY-LTR LTR ERV1 262 319 -200 4 1002 304 17 0 0 chr9 54683990 54684048 -69392124 + MURVY-LTR LTR ERV1 262 319 -200 4 1002 304 17 0 0 chr9 54684070 54684128 -69392044 + MURVY-LTR LTR ERV1 262 319 -200 4 1002 1794 41 49 0 chr9 54684160 54684406 -69391766 + MURVY-LTR LTR ERV1 262 519 0 4 1002 267 203 0 0 chr9 54684848 54684922 -69391250 + CT-rich Low_complexity Low_complexity 2 75 0 4 1002 364 225 200 34 chr9 54685027 54685202 -69390970 + RodERV21-int LTR ERV1 1 204 -4787 4 1002 540 269 47 12 chr9 54685405 54685574 -69390598 + RodERV21-int LTR ERV1 682 856 -4135 4 1002 257 253 12 12 chr9 54686347 54686427 -69389745 + RLTR19-int LTR ERVK 896 975 -5162 4 1002 491 207 242 25 chr9 54686505 54686703 -69389469 + RLTR19-int LTR ERVK 1555 1795 -3727 4 1002 1194 41 0 7 chr9 54687196 54687343 -69388829 + B1_Mm SINE Alu 2 147 0 4 1002 246 62 0 0 chr9 54687343 54687375 -69388797 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1002 546 182 33 8 chr9 54687421 54687543 -69388629 + RLTR19-int LTR ERVK 1967 2091 -3431 4 1002 1059 105 11 23 chr9 54687552 54687728 -69388444 - B2_Mm2 SINE B2 -4 191 18 4 1002 357 238 36 109 chr9 54687956 54688093 -69388079 + RLTR19-int LTR ERVK 2891 3017 -3120 4 1002 273 194 0 46 chr9 54688322 54688387 -69387785 + RLTR19-int LTR ERVK 3191 3252 -2885 4 1002 968 82 82 0 chr9 54688392 54688527 -69387645 + B1_Mus2 SINE Alu 2 147 0 4 1002 602 26 13 0 chr9 54688633 54688709 -69387463 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1002 808 173 42 24 chr9 54688744 54688910 -69387262 + RLTR19-int LTR ERVK 3578 3746 -2391 4 1002 331 239 56 96 chr9 54689141 54689266 -69386906 + RMER17C-int LTR ERVK 2764 2883 -355 4 1002 345 315 55 18 chr9 54689323 54689433 -69386739 + RLTR19-int LTR ERVK 4977 5090 -1460 4 1002 243 0 0 0 chr9 54689613 54689640 -69386532 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 1002 234 349 49 77 chr9 54689735 54689878 -69386294 - B4 SINE B4 -69 223 85 4 1002 243 217 0 0 chr9 54689899 54689945 -69386227 - B1F SINE Alu -103 46 1 4 1002 297 71 0 0 chr9 54690584 54690605 -69385567 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1002 1225 48 0 0 chr9 54690605 54690752 -69385420 - B1_Mm SINE Alu 0 147 1 4 1002 297 71 0 0 chr9 54690752 54690772 -69385400 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1002 304 0 0 0 chr9 54690787 54690830 -69385342 + L1Md_T LINE L1 6540 6582 0 4 1002 1566 39 0 0 chr9 54690830 54691008 -69385164 - B2_Mm1a SINE B2 -14 179 2 4 1002 1280 87 47 31 chr9 54691017 54691208 -69384964 - B2_Mm2 SINE B2 0 195 2 4 1002 1412 113 9 0 chr9 54692293 54692523 -69383649 + RLTR14 LTR ERV1 3 234 -148 4 1002 255 61 0 0 chr9 54692525 54692558 -69383614 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1002 1563 152 8 4 chr9 54692558 54692822 -69383350 - MT2B LTR ERVL -59 542 278 4 1002 236 259 0 33 chr9 54692827 54692887 -69383285 - MT2B LTR ERVL -482 119 62 4 1002 803 129 0 0 chr9 54692857 54692981 -69383191 - MT2B LTR ERVL -477 124 1 4 1002 348 123 13 52 chr9 54693018 54693095 -69383077 - ORR1A3-int LTR MaLR -1323 640 567 4 1002 14620 145 29 1 chr9 54693095 54695290 -69380882 - MERVL_2A-int LTR ERVL -133 5628 3374 4 1002 3064 90 36 2 chr9 54695287 54695700 -69380472 - MERVL_2A-int LTR ERVL -2550 3211 2785 4 1002 1563 235 40 49 chr9 54695733 54696202 -69379970 - RLTR20B1 LTR ERVK -50 513 49 4 1002 1715 102 25 0 chr9 54696223 54696458 -69379714 - MERVL_2A-int LTR ERVL -2972 2789 2549 4 1002 335 271 33 73 chr9 54696459 54696610 -69379562 + B4A SINE B4 34 178 -114 4 1002 423 234 12 175 chr9 54696626 54696792 -69379380 + MTD LTR MaLR 1 139 -280 4 1002 15545 134 54 7 chr9 54696792 54697435 -69378737 - MERVL_2A-int LTR ERVL -3234 2527 1882 4 1002 2670 70 118 0 chr9 54697435 54697792 -69378380 - MTB LTR MaLR 0 400 2 4 1002 15545 134 54 7 chr9 54697792 54699558 -69376614 - MERVL_2A-int LTR ERVL -3880 1881 5 4 1002 1045 95 13 0 chr9 54699563 54699721 -69376451 - MT2B LTR ERVL -165 436 277 4 1002 822 137 0 0 chr9 54699724 54699848 -69376324 - MT2B LTR ERVL -475 126 3 4 1002 987 273 70 44 chr9 54699849 54700236 -69375936 + RLTR42-int LTR ERVK 200 596 -4926 4 1002 708 98 0 0 chr9 54700285 54700387 -69375785 + MT2B LTR ERVL 3 104 -497 4 1002 2318 190 22 78 chr9 54700389 54700845 -69375327 + RLTR42-int LTR ERVK 740 1165 -4357 4 1002 1177 82 0 0 chr9 54700845 54700992 -69375180 + B1_Mus1 SINE Alu 2 148 0 4 1002 2318 190 22 78 chr9 54700992 54701088 -69375084 + RLTR42-int LTR ERVK 1166 1261 -4261 4 1002 2690 123 85 11 chr9 54701742 54702262 -69373910 + RMER6A LTR ERVK 195 752 -4 4 1002 351 0 0 0 chr9 54702847 54702886 -69373286 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1002 1062 144 0 0 chr9 54702886 54703065 -69373107 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1002 515 67 0 26 chr9 54703065 54703142 -69373030 + (GGGA)n Simple_repeat Simple_repeat 3 77 0 4 1002 1322 85 25 41 chr9 54704449 54704646 -69371526 + B2_Mm2 SINE B2 2 195 0 4 1002 979 284 89 21 chr9 54704704 54705042 -69371130 - MTE2b LTR MaLR 0 379 19 4 1002 590 257 183 24 chr9 54705837 54706255 -69369917 - RMER5 LTR ERV1 0 534 50 4 1002 375 270 7 0 chr9 54706411 54706511 -69369661 + B1F SINE Alu 5 109 -40 4 1002 502 258 57 0 chr9 54706523 54706647 -69369525 + ID_B1 SINE B4 81 211 -13 4 1002 885 95 0 0 chr9 54706649 54706796 -69369376 + (CA)n Simple_repeat Simple_repeat 2 148 0 4 1002 243 0 0 0 chr9 54706933 54706960 -69369212 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 1002 1113 89 0 0 chr9 54706961 54707118 -69369054 - B2_Mm2 SINE B2 -37 158 2 4 1002 22 0 0 0 chr9 54707310 54707332 -69368840 + AT_rich Low_complexity Low_complexity 1 22 0 4 1002 385 246 197 45 chr9 54707348 54707480 -69368692 - RSINE1 SINE B4 0 165 14 4 1002 387 0 0 0 chr9 54707798 54707841 -69368331 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1002 959 108 0 0 chr9 54707845 54707984 -69368188 - B1_Mm SINE Alu 0 147 9 4 1002 249 245 140 20 chr9 54708471 54708571 -69367601 - RMER30 DNA MER1_type -89 113 2 4 1002 422 267 0 0 chr9 54708755 54708841 -69367331 + B1F1 SINE Alu 3 88 -61 4 1002 2326 145 49 51 chr9 54708856 54709365 -69366807 - RLTR28 LTR ERVL -14 510 3 4 1002 369 109 0 0 chr9 54709576 54709631 -69366541 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 4 1002 1177 82 0 0 chr9 54709632 54709779 -69366393 - B1_Mm SINE Alu 0 147 1 4 1002 406 261 36 146 chr9 54709837 54710057 -69366115 + B3A SINE B2 1 196 -2 4 1002 232 250 0 87 chr9 54711568 54711660 -69364512 + C-rich Low_complexity Low_complexity 3 86 0 4 1002 338 270 23 31 chr9 54712638 54712768 -69363404 + B1F SINE Alu 11 139 -10 4 1002 666 255 7 7 chr9 54713487 54713633 -69362539 - B1_Mus1 SINE Alu 0 148 3 4 1002 259 153 85 5 chr9 54713858 54713959 -69362213 - PB1 SINE Alu -2 125 1 4 1002 22 56 0 0 chr9 54714314 54714350 -69361822 + AT_rich Low_complexity Low_complexity 1 36 0 4 1002 550 304 87 47 chr9 54714403 54714679 -69361493 + B4A SINE B4 2 288 -4 4 1002 1505 214 51 17 chr9 54714765 54715121 -69361051 - ORR1D1 LTR MaLR -5 369 2 4 1002 882 232 47 19 chr9 54715153 54715364 -69360808 - ID_B1 SINE B4 -2 222 6 4 1002 31 0 0 0 chr9 54715557 54715588 -69360584 + AT_rich Low_complexity Low_complexity 1 31 0 4 1002 328 189 98 22 chr9 54715588 54715680 -69360492 - B1_Mur4 SINE Alu -7 143 45 4 1002 245 277 213 0 chr9 54716198 54716292 -69359880 + PB1D10 SINE Alu 1 114 -3 5 1002 338 167 91 0 chr9 54716293 54716359 -69359813 + ID4 SINE ID 2 73 -10 5 1002 509 162 18 45 chr9 54716515 54716543 -69359629 - B1_Mur4 SINE Alu 0 150 127 5 1002 351 0 0 0 chr9 54716543 54716582 -69359590 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1002 509 162 18 45 chr9 54716582 54716663 -69359509 - B1_Mur4 SINE Alu -24 126 45 5 1002 242 229 86 0 chr9 54716709 54716779 -69359393 - L1M5 LINE L1 -210 5914 5839 5 1002 234 0 0 0 chr9 54716971 54716997 -69359175 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1002 368 178 0 165 chr9 54717957 54718078 -69358094 - PB1D10 SINE Alu 0 117 17 5 1002 693 206 170 35 chr9 54717995 54718166 -69358006 - ID_B1 SINE B4 -29 195 2 5 1002 22 0 0 0 chr9 54718622 54718644 -69357528 + AT_rich Low_complexity Low_complexity 1 22 0 5 1002 1083 175 66 5 chr9 54718818 54719030 -69357142 + URR1B DNA MER1_type 1 225 0 5 1002 650 242 78 54 chr9 54719173 54719544 -69356628 - RLTR12B LTR ERVK -250 278 1 5 1002 864 48 186 0 chr9 54719799 54719923 -69356249 + B1_Mm SINE Alu 1 147 0 5 1002 2003 152 56 27 chr9 54719998 54720371 -69355801 - ORR1C2 LTR MaLR 0 384 1 5 1002 805 179 20 40 chr9 54720467 54720618 -69355554 - B1_Mur2 SINE Alu 0 149 2 5 1002 383 261 90 60 chr9 54720618 54720785 -69355387 - Charlie1a DNA MER1_type -886 569 398 5 1002 285 339 53 18 chr9 54721049 54721163 -69355009 - PB1D7 SINE Alu -2 118 1 5 1002 384 256 59 17 chr9 54721201 54721320 -69354852 + RSINE1 SINE B4 4 127 -38 5 1002 574 231 26 71 chr9 54721574 54721728 -69354444 + B1_Mur3 SINE Alu 3 149 0 5 1002 235 239 71 43 chr9 54721761 54721831 -69354341 - ID4_ SINE ID -10 73 2 5 1002 388 237 88 15 chr9 54721840 54721977 -69354195 - B1F1 SINE Alu -2 147 1 5 1002 1447 66 38 0 chr9 54722321 54722504 -69353668 + B2_Mm2 SINE B2 2 191 -4 5 1002 1370 81 0 11 chr9 54722626 54722813 -69353359 - B2_Mm2 SINE B2 -9 186 2 5 1002 344 304 151 30 chr9 54722814 54722867 -69353305 - LTR40b LTR ERVL -269 193 140 5 1002 862 148 229 0 chr9 54722867 54723050 -69353122 - URR1B DNA MER1_type 0 225 1 5 1002 344 304 151 30 chr9 54723050 54723162 -69353010 - LTR40b LTR ERVL -323 139 8 5 1002 281 269 31 0 chr9 54723310 54723418 -69352754 + L1ME1 LINE L1 5491 5601 -573 5 1002 268 262 30 15 chr9 54723419 54723485 -69352687 + ID4_ SINE ID 1 67 -16 5 1002 673 230 115 0 chr9 54723587 54723735 -69352437 - B3 SINE B2 -4 212 48 5 1002 472 344 94 27 chr9 54723880 54724209 -69351963 + L1ME1 LINE L1 5811 6161 -18 5 1002 470 280 28 14 chr9 54724285 54724430 -69351742 - RMER15 LTR ERVL -4 571 425 5 1002 1123 242 146 83 chr9 54724575 54725090 -69351082 - RMER15-int LTR ERVL -5 4994 4448 5 1002 257 255 184 28 chr9 54725107 54725216 -69350956 - Lx8 LINE L1 -1109 6364 6239 5 1002 267 235 37 0 chr9 54725342 54725423 -69350749 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 5 1002 1374 66 55 0 chr9 54725607 54725789 -69350383 - B2_Mm2 SINE B2 -2 193 2 5 1002 2536 291 105 66 chr9 54725790 54726316 -69349856 - RMER15-int LTR ERVL -3307 1692 1090 5 1002 1874 141 129 25 chr9 54726316 54726673 -69349499 - ORR1B1 LTR MaLR 0 394 1 5 1002 2536 291 105 66 chr9 54726673 54727561 -69348611 - RMER15-int LTR ERVL -3910 1089 223 5 1002 719 161 58 14 chr9 54728321 54728460 -69347712 - B1_Mus2 SINE Alu 0 147 3 5 1002 727 262 45 70 chr9 54728508 54728750 -69347422 + ORR1D2 LTR MaLR 1 236 -134 5 1002 701 256 309 10 chr9 54728721 54729032 -69347140 - MTD LTR MaLR -15 404 1 5 1002 193 224 65 65 chr9 54729457 54729519 -69346653 + L2 LINE L2 2870 2931 -488 5 1002 396 0 0 0 chr9 54729751 54729795 -69346377 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1002 22 56 0 0 chr9 54730011 54730047 -69346125 + AT_rich Low_complexity Low_complexity 1 36 0 5 1002 216 0 0 0 chr9 54730540 54730564 -69345608 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1002 413 245 63 45 chr9 54730566 54730677 -69345495 - PB1D9 SINE Alu -7 113 1 5 1002 613 127 193 8 chr9 54730987 54731106 -69345066 + B1_Mur1 SINE Alu 2 142 -7 5 1002 322 255 101 0 chr9 54731292 54731383 -69344789 - PB1D7 SINE Alu -10 110 12 5 1002 255 31 0 0 chr9 54731429 54731461 -69344711 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1002 1025 72 43 0 chr9 54731475 54731614 -69344558 - B1_Mus1 SINE Alu 0 148 4 5 1002 218 351 0 0 chr9 54732055 54732112 -69344060 - B1F1 SINE Alu -89 60 4 5 1002 1201 58 129 0 chr9 54732214 54732385 -69343787 - B2_Mm1a SINE B2 0 193 1 5 1002 410 253 312 0 chr9 54732387 54732541 -69343631 + B3 SINE B2 15 216 0 5 1002 22 35 0 0 chr9 54733632 54733661 -69342511 + AT_rich Low_complexity Low_complexity 1 29 0 5 1002 393 303 45 18 chr9 54733997 54734108 -69342064 - ID_B1 SINE B4 -37 187 74 5 1002 270 263 204 35 chr9 54735449 54735591 -69340581 - MIR SINE MIR -80 182 17 5 1002 805 169 22 0 chr9 54735664 54735800 -69340372 + B1_Mur3 SINE Alu 5 143 -6 5 1002 649 193 71 43 chr9 54735821 54735962 -69340210 + B1_Mur3 SINE Alu 3 147 -2 5 1002 406 218 25 13 chr9 54735994 54736073 -69340099 + PB1D10 SINE Alu 1 80 -37 5 1002 537 254 115 78 chr9 54736160 54736378 -69339794 - B4 SINE B4 -66 226 1 5 1002 1146 125 10 54 chr9 54736397 54736600 -69339572 - B2_Mm2 SINE B2 0 195 2 5 1002 1125 76 14 0 chr9 54736636 54736780 -69339392 - B1_Mus2 SINE Alu 0 147 2 5 1002 26 0 0 0 chr9 54736803 54736829 -69339343 + AT_rich Low_complexity Low_complexity 1 26 0 5 1002 183 121 0 0 chr9 54737546 54737572 -69338600 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1002 1248 34 0 0 chr9 54737572 54737719 -69338453 - B1_Mm SINE Alu 0 147 1 5 1002 183 121 0 0 chr9 54737719 54737725 -69338447 + (T)n Simple_repeat Simple_repeat 1 6 0 5 1002 664 280 19 68 chr9 54737732 54737939 -69338233 - B3A SINE B2 -1 197 1 5 1002 474 305 1 8 chr9 54737977 54738098 -69338074 + B3 SINE B2 97 215 -1 5 1002 300 298 44 30 chr9 54738313 54738448 -69337724 - MER104 DNA Tc2 -3 178 42 5 1002 335 250 94 42 chr9 54738498 54738594 -69337578 - PB1D9 SINE Alu -15 105 5 5 1002 225 178 0 0 chr9 54738595 54738640 -69337532 + CT-rich Low_complexity Low_complexity 2 46 0 5 1002 436 290 179 22 chr9 54739893 54740169 -69336003 - MLT1G LTR MaLR -54 541 225 5 1002 611 293 119 22 chr9 54740689 54740874 -69335298 - B3 SINE B2 -13 203 1 5 1002 350 325 0 0 chr9 54741400 54741477 -69334695 - B1F SINE Alu -71 78 2 5 1002 270 376 0 12 chr9 54741477 54741505 -69334667 - B4A SINE B4 -206 86 60 5 1002 226 278 0 18 chr9 54741647 54741702 -69334470 + ZP3AR Satellite Satellite 26 79 -133 5 1002 545 255 195 13 chr9 54741664 54741823 -69334349 + ID_B1 SINE B4 1 188 -36 5 1002 462 252 99 0 chr9 54741867 54741978 -69334194 + B1F SINE Alu 2 123 -26 5 1002 825 211 37 37 chr9 54742092 54742308 -69333864 + B3 SINE B2 1 216 0 5 1002 864 296 39 10 chr9 54742804 54743023 -69333149 - ID_B1 SINE B4 -69 223 2 5 1002 830 175 33 28 chr9 54744996 54745178 -69330994 + B2_Mm2 SINE B2 2 184 -11 5 1002 264 215 50 12 chr9 54745567 54745647 -69330525 - RLTR28 LTR ERVL -24 500 418 5 1002 794 215 212 34 chr9 54745709 54745978 -69330194 - RLTR28 LTR ERVL -164 317 1 5 1002 604 197 17 0 chr9 54746190 54746307 -69329865 + B1_Mus1 SINE Alu 19 137 -11 5 1002 22 56 0 0 chr9 54746445 54746481 -69329691 + AT_rich Low_complexity Low_complexity 1 36 0 5 1002 24 32 0 0 chr9 54746497 54746528 -69329644 + AT_rich Low_complexity Low_complexity 1 31 0 5 1002 758 52 0 0 chr9 54746760 54746856 -69329316 - B1_Mus2 SINE Alu 0 147 52 5 1002 412 192 126 55 chr9 54748408 54748535 -69327637 - B1F SINE Alu -1 148 13 5 1002 21 57 0 0 chr9 54748556 54748591 -69327581 + AT_rich Low_complexity Low_complexity 1 35 0 5 1002 369 0 0 0 chr9 54748620 54748661 -69327511 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1002 235 209 47 0 chr9 54748680 54748723 -69327449 + B1_Mur4 SINE Alu 9 53 -97 5 1002 384 352 110 46 chr9 54748946 54749229 -69326943 - B4 SINE B4 0 292 6 5 1002 296 239 59 8 chr9 54749330 54749432 -69326740 - L1MA4 LINE L1 -359 5953 5851 5 1002 935 79 0 0 chr9 54749449 54749576 -69326596 - B1_Mus1 SINE Alu 0 148 22 5 1002 515 118 12 0 chr9 54749627 54749712 -69326460 + (TC)n Simple_repeat Simple_repeat 2 87 0 5 1002 324 0 0 0 chr9 54749712 54749748 -69326424 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1002 325 248 169 13 chr9 54749827 54750031 -69326141 - L1MA4 LINE L1 -348 5964 5729 5 1002 534 302 0 31 chr9 54750357 54750487 -69325685 + B1F SINE Alu 19 144 -5 5 1002 577 252 7 33 chr9 54750489 54750641 -69325531 + B1_Mur1 SINE Alu 2 149 0 5 1002 940 252 5 14 chr9 54750906 54751123 -69325049 - B3 SINE B2 0 216 2 5 1002 595 267 88 29 chr9 54752513 54752711 -69323461 - B3A SINE B2 -1 215 15 5 1002 1164 109 16 21 chr9 54752976 54752995 -69323177 - B2_Mm2 SINE B2 -8 187 169 5 1002 216 0 0 0 chr9 54752995 54753019 -69323153 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 5 1002 1164 109 16 21 chr9 54753019 54753187 -69322985 - B2_Mm2 SINE B2 -27 168 2 5 1002 324 170 89 129 chr9 54753231 54753332 -69322840 - RSINE1 SINE B4 -63 102 6 5 1002 1084 149 80 24 chr9 54753515 54753728 -69322444 + URR1A DNA MER1_type 2 226 0 5 1002 1000 93 50 0 chr9 54753818 54753958 -69322214 + B1_Mus1 SINE Alu 2 148 0 5 1002 30 27 0 0 chr9 54754740 54754777 -69321395 + AT_rich Low_complexity Low_complexity 1 37 0 5 1002 222 37 0 0 chr9 54754913 54754940 -69321232 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1002 672 225 29 0 chr9 54755322 54755460 -69320712 + B1_Mur4 SINE Alu 9 150 0 6 1002 321 185 0 0 chr9 54755474 54755539 -69320633 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1002 201 39 0 0 chr9 54755539 54755565 -69320607 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 1002 846 195 76 17 chr9 54755752 54755924 -69320248 - URR1B DNA MER1_type -43 182 1 6 1002 735 82 94 39 chr9 54756093 54756220 -69319952 - B1_Mur3 SINE Alu 0 149 16 6 1002 229 337 94 10 chr9 54756346 54756359 -69319813 + B4A SINE B4 71 91 -201 6 1002 365 283 30 10 chr9 54756359 54756459 -69319713 + PB1D7 SINE Alu 1 102 -18 6 1002 324 48 0 0 chr9 54756459 54756501 -69319671 + (TAA)n Simple_repeat Simple_repeat 1 42 0 6 1002 26 0 0 0 chr9 54758809 54758835 -69317337 + AT_rich Low_complexity Low_complexity 1 26 0 6 1002 397 248 0 153 chr9 54760748 54760872 -69315300 + PB1D10 SINE Alu 3 107 -10 6 1002 432 294 18 24 chr9 54761961 54762125 -69314047 + RSINE1 SINE B4 3 165 0 6 1002 21 0 0 0 chr9 54762295 54762316 -69313856 + AT_rich Low_complexity Low_complexity 1 21 0 6 1002 257 262 182 15 chr9 54762401 54762510 -69313662 + B1F2 SINE Alu 1 122 -27 6 1002 810 74 0 0 chr9 54762657 54762765 -69313407 - B1_Mus2 SINE Alu 0 147 40 6 1002 274 175 162 20 chr9 54762700 54762799 -69313373 - RLTR25B LTR ERVK -519 509 397 6 1002 378 100 0 32 chr9 54762843 54762905 -69313267 - B1_Mur4 SINE Alu -90 60 1 6 1002 313 109 17 52 chr9 54762905 54762957 -69313215 - B1_Mur4 SINE Alu -100 50 1 6 1002 759 270 42 38 chr9 54763038 54763250 -69312922 + B4A SINE B4 5 217 -75 6 1002 705 172 78 0 chr9 54763643 54763771 -69312401 + B1_Mus1 SINE Alu 2 139 -9 6 1002 933 42 0 8 chr9 54763897 54764018 -69312154 + B1_Mm SINE Alu 26 145 -2 6 1002 584 135 23 131 chr9 54764210 54764402 -69311770 + ORR1A4 LTR MaLR 1 184 -190 6 1002 243 0 0 0 chr9 54765833 54765860 -69310312 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1002 520 299 7 0 chr9 54766362 54766509 -69309663 - B1F SINE Alu -1 148 1 6 1002 619 267 182 0 chr9 54766872 54767037 -69309135 + ID_B1 SINE B4 3 197 -27 6 1002 375 339 9 0 chr9 54767073 54767188 -69308984 - B4A SINE B4 -175 117 2 6 1002 196 250 89 129 chr9 54767224 54767325 -69308847 + MIR3 SINE MIR 92 188 -20 6 1002 553 214 27 41 chr9 54767427 54767573 -69308599 - B1F2 SINE Alu -1 148 5 6 1002 796 253 36 10 chr9 54767598 54767664 -69308508 - B3A SINE B2 -1 197 128 6 1002 704 247 145 33 chr9 54767664 54767995 -69308177 - RLTR9A LTR ERVK 0 368 1 6 1002 796 253 36 10 chr9 54767995 54768120 -69308052 - B3A SINE B2 -71 127 2 6 1002 5295 55 1 0 chr9 54768772 54769428 -69306744 - L1_Mus1 LINE L1 -1 6566 5910 6 1002 332 284 49 0 chr9 54769526 54769607 -69306565 - ID SINE ID -139 85 1 6 1002 1247 41 0 0 chr9 54769802 54769949 -69306223 - B1_Mm SINE Alu 0 147 1 6 1002 783 199 14 7 chr9 54770194 54770341 -69305831 - B1_Mur1 SINE Alu 0 149 2 6 1002 882 282 44 0 chr9 54770381 54770587 -69305585 - ID_B1 SINE B4 -4 220 6 6 1002 34380 36 0 3 chr9 54770724 54775932 -69300240 + L1Md_T LINE L1 299 5589 -297 6 1002 8610 26 0 0 chr9 54775932 54776928 -69299244 + L1Md_T LINE L1 5590 6585 0 6 1002 188 397 123 19 chr9 54776943 54777097 -69299075 - L2c LINE L2 -304 3083 2914 6 1002 260 286 14 14 chr9 54777133 54777204 -69298968 + PB1D10 SINE Alu 29 99 -18 6 1002 584 261 30 23 chr9 54777388 54777521 -69298651 + B1F2 SINE Alu 5 138 -11 6 1002 180 0 0 0 chr9 54777522 54777542 -69298630 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 6 1002 431 270 0 34 chr9 54777890 54778009 -69298163 + PB1D10 SINE Alu 3 117 0 6 1002 288 70 0 0 chr9 54778011 54778054 -69298118 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1002 1202 268 154 9 chr9 54778192 54778652 -69297520 - L1MEc LINE L1 -5666 734 208 6 1002 712 262 93 10 chr9 54779088 54779292 -69296880 + B4A SINE B4 13 233 -59 6 1002 399 294 43 0 chr9 54779332 54779424 -69296748 + RSINE1 SINE B4 68 163 -2 6 1002 21 0 0 0 chr9 54779449 54779470 -69296702 + AT_rich Low_complexity Low_complexity 1 21 0 6 1002 332 288 0 0 chr9 54779470 54779543 -69296629 + B4A SINE B4 218 290 -2 6 1002 420 20 0 0 chr9 54779557 54779606 -69296566 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1002 773 217 61 0 chr9 54779698 54779878 -69296294 - B3 SINE B2 -25 191 1 6 1002 602 272 0 7 chr9 54779878 54780015 -69296157 - B1F2 SINE Alu -11 138 3 6 1002 981 289 81 28 chr9 54780535 54780966 -69295206 - L1M3 LINE L1 -574 5717 5264 6 1002 331 236 14 0 chr9 54781074 54781146 -69295026 - B4A SINE B4 -4 288 216 6 1002 204 40 0 0 chr9 54781161 54781186 -69294986 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 6 1002 625 282 19 31 chr9 54781208 54781369 -69294803 - RSINE1 SINE B4 -4 161 3 6 1002 542 283 131 20 chr9 54781498 54781814 -69294358 - L1M3 LINE L1 -969 5174 4840 6 1002 1374 65 54 0 chr9 54781814 54781998 -69294174 - B2_Mm2 SINE B2 0 195 2 6 1002 298 305 109 79 chr9 54781998 54782084 -69294088 - L1M3 LINE L1 -1304 4839 4760 6 1002 402 237 0 0 chr9 54782392 54782468 -69293704 + ID4_ SINE ID 2 77 -6 6 1002 243 0 0 0 chr9 54782469 54782496 -69293676 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 6 1002 701 163 65 0 chr9 54782809 54782932 -69293240 - B1_Mur2 SINE Alu -5 144 14 6 1002 425 254 103 44 chr9 54782810 54782946 -69293226 - B4 SINE B4 -72 220 77 6 1002 1370 97 0 10 chr9 54783008 54783205 -69292967 - B2_Mm2 SINE B2 0 195 1 6 1002 352 239 15 0 chr9 54783237 54783304 -69292868 + B3A SINE B2 36 103 -95 6 1002 285 29 0 0 chr9 54783355 54783389 -69292783 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1002 763 271 76 17 chr9 54783468 54783704 -69292468 + B4 SINE B4 43 292 0 6 1002 198 250 0 0 chr9 54783787 54783843 -69292329 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1002 423 0 0 0 chr9 54784457 54784504 -69291668 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1002 402 21 0 0 chr9 54784504 54784550 -69291622 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1002 235 339 71 24 chr9 54784692 54784706 -69291466 - B4A SINE B4 -65 227 214 6 1002 252 100 0 0 chr9 54784706 54784746 -69291426 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1002 556 273 141 2 chr9 54784746 54784916 -69291256 - ID_B1 SINE B4 -79 213 11 6 1002 1174 47 14 0 chr9 54785297 54785445 -69290727 - B1_Mur4 SINE Alu 0 150 1 6 1002 255 264 0 0 chr9 54785502 54785555 -69290617 - B1F SINE Alu -55 94 42 6 1002 1208 48 0 14 chr9 54785678 54785825 -69290347 - B1_Mm SINE Alu 0 147 3 6 1002 3989 223 97 57 chr9 54785858 54787104 -69289068 - RMER1A Other Other 0 1030 15 6 1002 381 43 0 0 chr9 54787192 54787239 -69288933 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1002 1017 256 86 7 chr9 54787245 54787542 -69288630 - Lx6 LINE L1 -622 6838 6281 6 1002 318 26 0 0 chr9 54787543 54787582 -69288590 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1002 431 194 138 29 chr9 54787584 54787722 -69288450 - L1M5 LINE L1 -788 5358 5206 6 1003 1063 229 40 14 chr9 54788108 54788447 -69287725 - L1MA4A LINE L1 -1485 5988 5643 6 1003 313 274 48 0 chr9 54788447 54788531 -69287641 - MLT1I LTR MaLR -230 181 94 6 1003 612 140 18 18 chr9 54788703 54788812 -69287360 + B1_Mur3 SINE Alu 41 149 0 6 1003 658 156 0 0 chr9 54788852 54788961 -69287211 - B1_Mur3 SINE Alu -32 117 9 6 1003 22 0 0 0 chr9 54789110 54789132 -69287040 + AT_rich Low_complexity Low_complexity 1 22 0 6 1003 362 302 40 48 chr9 54789280 54789405 -69286767 - RLTR18 LTR ERVK -489 127 4 6 1003 300 27 0 0 chr9 54789428 54789465 -69286707 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1003 526 226 104 8 chr9 54789475 54789609 -69286563 - B3A SINE B2 -42 156 10 6 1003 288 303 45 0 chr9 54789727 54789816 -69286356 - B1F2 SINE Alu -51 98 6 6 1003 220 266 96 131 chr9 54789897 54789931 -69286241 - B3A SINE B2 -4 194 3 6 1003 574 269 12 30 chr9 54789931 54790096 -69286076 - RSINE1 SINE B4 0 165 4 6 1003 608 148 205 0 chr9 54790125 54790247 -69285925 + B1_Mus2 SINE Alu 1 147 0 6 1003 930 80 285 0 chr9 54790365 54790516 -69285656 - B2_Mm2 SINE B2 0 195 2 6 1003 1371 71 16 27 chr9 54790596 54790755 -69285417 + B2_Mm1t SINE B2 2 160 -33 6 1003 351 0 0 0 chr9 54790755 54790794 -69285378 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 1003 1371 71 16 27 chr9 54790794 54790822 -69285350 + B2_Mm1t SINE B2 161 187 -6 6 1003 352 307 64 5 chr9 54790844 54791047 -69285125 - L1M5 LINE L1 -2261 3885 3671 6 1003 626 286 11 6 chr9 54791114 54791293 -69284879 + B3A SINE B2 1 180 -18 6 1003 314 0 49 0 chr9 54791340 54791381 -69284791 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1003 1004 86 0 35 chr9 54791381 54791525 -69284647 - B1_Mus1 SINE Alu -9 139 1 6 1003 588 233 53 0 chr9 54791608 54791741 -69284431 + ID_B1 SINE B4 81 220 -4 6 1003 341 225 152 9 chr9 54791755 54791867 -69284305 - L1M5 LINE L1 -2647 3499 3372 6 1003 931 49 130 0 chr9 54791887 54792010 -69284162 + B1_Mur4 SINE Alu 2 140 -10 6 1003 282 29 0 0 chr9 54792010 54792045 -69284127 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1003 1484 66 0 6 chr9 54792057 54792239 -69283933 - B2_Mm2 SINE B2 -14 181 1 6 1003 949 206 44 5 chr9 54792306 54792511 -69283661 - B3 SINE B2 0 216 4 6 1003 369 0 0 0 chr9 54792877 54792918 -69283254 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1003 449 227 0 11 chr9 54792943 54793032 -69283140 - B1_Mur1 SINE Alu -17 132 45 7 1003 266 174 261 0 chr9 54793150 54793219 -69282953 + PB1D7 SINE Alu 27 113 -7 7 1003 397 260 123 0 chr9 54793318 54793464 -69282708 - L1MB7 LINE L1 -11 6173 6010 7 1003 1953 210 51 26 chr9 54794348 54794876 -69281296 - RLTR20B3 LTR ERVK -13 564 24 7 1003 1198 35 7 0 chr9 54794995 54795138 -69281034 + B1_Mus1 SINE Alu 5 148 0 7 1003 217 176 78 0 chr9 54795243 54795294 -69280878 + ID SINE ID 28 82 -142 7 1003 207 0 0 0 chr9 54795474 54795497 -69280675 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1003 443 212 50 20 chr9 54795497 54795598 -69280574 - PB1D9 SINE Alu -10 110 7 7 1003 300 295 47 9 chr9 54796219 54796325 -69279847 - PB1 SINE Alu -16 111 2 7 1003 360 226 76 76 chr9 54796508 54796652 -69279520 - PB1 SINE Alu 0 150 7 7 1003 245 53 0 50 chr9 54796872 54796912 -69279260 + (TTTTC)n Simple_repeat Simple_repeat 4 41 0 7 1003 220 264 0 0 chr9 54796978 54797031 -69279141 + MIRm SINE MIR 220 272 -4 7 1003 180 222 22 0 chr9 54796991 54797036 -69279136 + L2c LINE L2 3342 3387 0 7 1003 198 258 62 73 chr9 54797226 54797322 -69278850 - MIRb SINE MIR -58 210 116 7 1003 297 217 33 0 chr9 54797764 54797824 -69278348 - B1_Mur1 SINE Alu -7 142 81 7 1003 324 48 0 0 chr9 54798019 54798061 -69278111 + (T)n Simple_repeat Simple_repeat 1 42 0 7 1003 1154 48 0 7 chr9 54798061 54798209 -69277963 - B1_Mus1 SINE Alu 0 148 2 7 1003 513 332 116 23 chr9 54801540 54801938 -69274234 - Lx8 LINE L1 -257 7216 6782 7 1003 411 73 0 0 chr9 54802920 54802975 -69273197 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1003 934 161 0 20 chr9 54802982 54803134 -69273038 - B1_Mur4 SINE Alu -1 149 1 7 1003 768 269 88 14 chr9 54803309 54803660 -69272512 - Lx8 LINE L1 -199 7274 6898 7 1003 372 276 8 25 chr9 54804964 54805083 -69271089 - B1F2 SINE Alu -29 120 4 7 1003 468 256 70 35 chr9 54805894 54806036 -69270136 + B3A SINE B2 1 147 -51 7 1003 246 32 0 0 chr9 54806044 54806075 -69270097 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1003 504 0 0 0 chr9 54806233 54806289 -69269883 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1003 223 281 76 19 chr9 54806700 54806805 -69269367 + MER5B DNA MER1_type 21 131 -47 7 1003 328 234 93 31 chr9 54807021 54807118 -69269054 - PB1D10 SINE Alu 0 117 15 7 1003 401 285 119 53 chr9 54807163 54807389 -69268783 + MER82 DNA MER2_type 280 520 -133 7 1003 1892 167 76 42 chr9 54807416 54807823 -69268349 - MTC LTR MaLR 0 421 1 7 1003 462 146 0 0 chr9 54809263 54809345 -69266827 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 7 1003 671 203 146 26 chr9 54809481 54809673 -69266499 - B3 SINE B2 0 216 2 7 1003 2973 133 39 14 chr9 54809721 54810209 -69265963 - Lx2B LINE L1 -578 6422 5923 7 1003 5293 131 28 1 chr9 54810205 54811102 -69265070 + Lx2B LINE L1 5016 5938 -1062 7 1003 761 49 10 0 chr9 54811187 54811289 -69264883 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 7 1003 815 204 227 0 chr9 54811297 54811469 -69264703 + B3 SINE B2 5 215 -1 7 1003 2523 143 5 7 chr9 54811512 54811926 -69264246 - MTC LTR MaLR -8 413 1 7 1003 1728 151 99 45 chr9 54812056 54812411 -69263761 + ORR1A2 LTR MaLR 1 374 0 7 1003 1182 124 19 14 chr9 54812411 54812623 -69263549 + ORR1A2-int LTR MaLR 1 213 -1157 7 1003 2241 88 6 0 chr9 54812623 54812940 -69263232 + ORR1A2 LTR MaLR 1 319 -8 7 1003 5412 180 55 12 chr9 54812944 54814058 -69262114 + ORR1A2-int LTR MaLR 209 1370 0 7 1003 1275 180 163 25 chr9 54814061 54814386 -69261786 + ORR1A2 LTR MaLR 4 373 -1 7 1003 1579 92 88 115 chr9 54814390 54814720 -69261452 + ORR1A4 LTR MaLR 1 321 -8 7 1003 758 177 69 6 chr9 54814783 54814942 -69261230 - B3 SINE B2 -6 210 42 7 1003 555 16 0 0 chr9 54814947 54815011 -69261161 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1003 662 222 22 15 chr9 54815011 54815148 -69261024 - B1_Mur2 SINE Alu -11 138 1 7 1003 547 264 46 59 chr9 54815177 54815330 -69260842 + RSINE1 SINE B4 3 153 -12 7 1003 563 265 68 24 chr9 54815367 54815572 -69260600 + ID_B1 SINE B4 3 216 -8 7 1003 356 231 22 45 chr9 54815608 54815740 -69260432 - L1MB8 LINE L1 -113 6051 5912 7 1003 293 278 14 0 chr9 54816095 54816167 -69260005 + RMER10B LTR ERVL 269 341 -57 7 1003 1029 92 0 0 chr9 54816169 54816310 -69259862 - B2_Mm2 SINE B2 -54 141 1 7 1003 544 282 49 0 chr9 54816440 54816582 -69259590 - RSINE1 SINE B4 -14 151 3 7 1003 594 160 210 40 chr9 54816598 54816722 -69259450 - B1_Mur2 SINE Alu -2 147 3 7 1003 537 148 170 36 chr9 54817319 54817431 -69258741 - B1_Mur1 SINE Alu 0 149 23 7 1003 432 0 0 0 chr9 54817432 54817480 -69258692 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1003 2853 135 105 81 chr9 54817533 54818079 -69258093 + RMER4B LTR ERVK 1 553 -32 7 1003 351 0 0 0 chr9 54818079 54818118 -69258054 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1003 2853 135 105 81 chr9 54818118 54818142 -69258030 + RMER4B LTR ERVK 554 585 0 7 1003 614 253 39 69 chr9 54818809 54819013 -69257159 + B3A SINE B2 1 198 0 7 1003 287 298 111 26 chr9 54819130 54819247 -69256925 + PB1 SINE Alu 1 127 0 7 1003 546 157 142 42 chr9 54819283 54819403 -69256769 - B1_Mur4 SINE Alu -17 133 2 7 1003 630 253 39 64 chr9 54819411 54819614 -69256558 - B3A SINE B2 0 198 1 7 1003 439 320 57 25 chr9 54819851 54820008 -69256164 + RSINE1 SINE B4 2 163 -2 7 1003 356 301 146 0 chr9 54820111 54820234 -69255938 + Arthur1B DNA Tip100 481 621 -604 7 1003 289 231 87 148 chr9 54820228 54820344 -69255828 + Arthur1B DNA Tip100 960 1071 -154 7 1003 816 199 14 7 chr9 54820344 54820491 -69255681 + B1_Mur2 SINE Alu 2 149 0 7 1003 289 231 87 148 chr9 54820491 54820603 -69255569 + Arthur1B DNA Tip100 1072 1174 -51 7 1003 568 233 189 16 chr9 54820603 54820909 -69255263 + MTEb LTR MaLR 1 370 -9 7 1003 709 246 16 49 chr9 54821881 54822065 -69254107 + MTEa LTR MaLR 1 178 -201 7 1003 260 161 35 18 chr9 54822087 54822144 -69254028 + MTEa LTR MaLR 168 225 -154 7 1003 440 35 17 0 chr9 54822548 54822606 -69253566 + (GAGAA)n Simple_repeat Simple_repeat 1 59 0 7 1003 401 234 80 66 chr9 54822775 54822912 -69253260 - RSINE1 SINE B4 -21 144 6 7 1003 530 211 111 15 chr9 54822912 54823047 -69253125 - ID_B1 SINE B4 0 224 77 7 1003 209 33 0 32 chr9 54823777 54823808 -69252364 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1003 393 303 32 4 chr9 54823843 54824077 -69252095 - B4A SINE B4 -21 271 2 7 1003 208 161 46 69 chr9 54824241 54824328 -69251844 + (TATATG)n Simple_repeat Simple_repeat 3 87 0 7 1003 469 242 91 0 chr9 54824378 54824477 -69251695 + RSINE1 SINE B4 57 164 -1 7 1003 205 314 102 23 chr9 54825278 54825366 -69250806 - L2c LINE L2 0 3387 3293 7 1003 402 298 108 54 chr9 54825427 54825668 -69250504 + ORR1E LTR MaLR 1 254 -105 7 1003 2231 102 35 0 chr9 54825756 54826071 -69250101 + ORR1A3 LTR MaLR 1 326 0 7 1003 621 162 0 0 chr9 54826075 54826186 -69249986 + CT-rich Low_complexity Low_complexity 2 112 0 7 1003 378 0 0 0 chr9 54826822 54826864 -69249308 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1003 317 303 0 22 chr9 54826869 54826960 -69249212 - PB1D10 SINE Alu -27 90 2 7 1003 473 284 167 10 chr9 54827243 54827435 -69248737 - B4A SINE B4 -21 271 50 7 1003 444 296 22 55 chr9 54827424 54827606 -69248566 + B3 SINE B2 16 191 -25 7 1003 207 240 36 91 chr9 54828795 54828905 -69247267 - MIR3 SINE MIR -16 192 89 7 1003 22 35 0 0 chr9 54829424 54829453 -69246719 + GC_rich Low_complexity Low_complexity 1 29 0 7 1003 240 215 51 0 chr9 54829481 54829560 -69246612 + (CGGGG)n Simple_repeat Simple_repeat 5 87 0 7 1003 631 246 47 134 chr9 54830806 54831126 -69245046 - B4 SINE B4 0 292 1 7 1003 182 328 15 0 chr9 54831147 54831214 -69244958 + L2c LINE L2 3320 3387 0 7 1003 234 0 0 0 chr9 54831453 54831479 -69244693 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1003 261 348 148 5 chr9 54832116 54832302 -69243870 - MIR SINE MIR -48 228 8 7 1003 5451 205 93 63 chr9 54832386 54832790 -69243382 - Lx7 LINE L1 0 7696 7252 7 1003 991 65 58 7 chr9 54832790 54832929 -69243243 - B1_Mus1 SINE Alu -2 146 1 7 1003 5451 205 93 63 chr9 54832929 54833895 -69242277 - Lx7 LINE L1 -445 7251 6285 7 1003 280 205 12 24 chr9 54833951 54834036 -69242136 - Lx7 LINE L1 -6742 986 903 7 1003 419 264 59 44 chr9 54834390 54834525 -69241647 - ID_B1 SINE B4 -11 213 77 7 1003 345 62 0 0 chr9 54834801 54834849 -69241323 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 7 1003 1083 53 15 0 chr9 54834849 54834982 -69241190 - B1_Mus1 SINE Alu -13 135 1 7 1003 604 279 29 16 chr9 54835053 54835234 -69240938 - B3A SINE B2 -5 211 29 7 1003 901 140 14 14 chr9 54835258 54835403 -69240769 - B1_Mus1 SINE Alu -3 145 1 7 1003 1189 112 21 16 chr9 54835433 54835623 -69240549 - B2_Mm2 SINE B2 -3 192 2 7 1003 238 220 65 151 chr9 54835857 54835996 -69240176 - MER20 DNA MER1_type -4 215 89 7 1003 304 296 152 60 chr9 54836137 54836288 -69239884 - MER20 DNA MER1_type -53 166 2 7 1003 288 193 18 0 chr9 54836474 54836531 -69239641 - ID_B1 SINE B4 -4 220 163 7 1003 1022 76 223 0 chr9 54836675 54836832 -69239340 + B2_Mm1a SINE B2 1 192 -1 7 1003 905 175 64 12 chr9 54836832 54837005 -69239167 + B3 SINE B2 26 207 -9 7 1003 238 269 50 70 chr9 54837151 54837175 -69238997 - PB1D10 SINE Alu -8 109 12 7 1003 285 250 53 0 chr9 54837175 54837251 -69238921 - ID_B1 SINE B4 -52 172 93 7 1003 189 0 0 0 chr9 54837835 54837856 -69238316 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1003 24 32 0 0 chr9 54838429 54838460 -69237712 + AT_rich Low_complexity Low_complexity 1 31 0 7 1003 295 270 158 10 chr9 54838610 54838711 -69237461 + MER20 DNA MER1_type 101 216 -3 7 1003 21 0 0 0 chr9 54838931 54838952 -69237220 + AT_rich Low_complexity Low_complexity 1 21 0 7 1003 29 28 0 0 chr9 54838967 54839003 -69237169 + AT_rich Low_complexity Low_complexity 1 36 0 7 1003 503 228 8 42 chr9 54839051 54839170 -69237002 - PB1D10 SINE Alu -2 115 1 8 1003 217 298 143 16 chr9 54839220 54839346 -69236826 + B1F1 SINE Alu 1 142 -7 8 1003 3012 44 29 49 chr9 54839389 54839797 -69236375 - MTB LTR MaLR 0 400 1 8 1003 257 362 131 19 chr9 54840143 54840250 -69235922 - ID_B1 SINE B4 -29 195 77 8 1003 313 284 143 39 chr9 54841050 54841204 -69234968 - MIR SINE MIR -47 221 48 8 1003 1331 140 41 18 chr9 54841301 54841520 -69234652 + URR1A DNA MER1_type 1 224 -2 8 1003 1657 227 53 45 chr9 54841943 54842459 -69233713 - RLTR20A LTR ERVK 0 541 1 8 1003 196 233 140 38 chr9 54842477 54842648 -69233524 - L2c LINE L2 -225 3162 2970 8 1003 294 298 223 0 chr9 54843256 54843350 -69232822 - RSINE1 SINE B4 -47 118 4 8 1003 1027 229 9 0 chr9 54843853 54844067 -69232105 - B3 SINE B2 0 216 1 8 1003 231 342 103 19 chr9 54844068 54844330 -69231842 - L2 LINE L2 -674 2745 2462 8 1003 26 0 0 0 chr9 54844727 54844753 -69231419 + AT_rich Low_complexity Low_complexity 1 26 0 8 1003 45 45 0 0 chr9 54844839 54844905 -69231267 + AT_rich Low_complexity Low_complexity 1 66 0 8 1003 203 156 0 43 chr9 54844920 54844967 -69231205 + CT-rich Low_complexity Low_complexity 3 47 0 8 1003 690 207 65 91 chr9 54845099 54845285 -69230887 + B3A SINE B2 1 181 -17 8 1003 691 40 10 10 chr9 54845290 54845390 -69230782 + (CA)n Simple_repeat Simple_repeat 2 101 0 8 1003 672 48 0 0 chr9 54845399 54845483 -69230689 + (TCTCCC)n Simple_repeat Simple_repeat 5 88 0 8 1003 537 260 8 88 chr9 54845531 54845697 -69230475 + ID_B1 SINE B4 80 223 -1 8 1003 990 132 0 0 chr9 54846340 54846484 -69229688 + B1_Mus1 SINE Alu 5 148 0 8 1003 1037 204 46 0 chr9 54846503 54846699 -69229473 + B3 SINE B2 7 211 -5 8 1003 291 311 94 22 chr9 54846994 54847010 -69229162 + B1_Mus1 SINE Alu 1 143 0 8 1003 507 226 77 17 chr9 54847010 54847127 -69229045 + ID_B1 SINE B4 95 218 -6 8 1003 494 220 42 20 chr9 54847190 54847365 -69228807 - B3A SINE B2 -18 177 1 8 1003 244 82 65 16 chr9 54847823 54847885 -69228287 + GA-rich Low_complexity Low_complexity 2 66 0 8 1003 599 300 123 59 chr9 54848582 54849060 -69227112 - L2a LINE L2 -50 3376 2871 8 1003 799 233 69 5 chr9 54849084 54849287 -69226885 - B3 SINE B2 0 216 1 8 1003 344 208 42 0 chr9 54849701 54849773 -69226399 - ID4_ SINE ID -4 79 5 8 1003 924 79 0 0 chr9 54850724 54850850 -69225322 + (TC)n Simple_repeat Simple_repeat 2 127 0 8 1003 1058 39 0 0 chr9 54850850 54850978 -69225194 - B1_Mus2 SINE Alu -10 137 10 8 1003 362 270 51 7 chr9 54853288 54853426 -69222746 + B1F SINE Alu 5 148 -1 8 1003 330 194 0 0 chr9 54853521 54853593 -69222579 + CT-rich Low_complexity Low_complexity 3 74 0 8 1003 561 195 171 0 chr9 54853596 54853719 -69222453 - B1_Mur1 SINE Alu 0 149 6 8 1003 437 275 38 0 chr9 54853737 54853843 -69222329 - PB1D10 SINE Alu -8 109 3 8 1003 379 250 99 27 chr9 54853851 54853962 -69222210 - PB1 SINE Alu -8 119 1 8 1003 257 217 0 31 chr9 54854711 54854808 -69221364 - PB1 SINE Alu -1 126 1 8 1003 2008 159 58 9 chr9 54854877 54855219 -69220953 - ORR1C1 LTR MaLR -16 362 4 8 1003 504 254 0 25 chr9 54855584 54855705 -69220467 + PB1D7 SINE Alu 2 119 -1 8 1003 426 269 113 82 chr9 54856104 54856469 -69219703 + ORR1E LTR MaLR 1 362 -8 8 1003 460 255 170 40 chr9 54856506 54856706 -69219466 - RMER15 LTR ERVL -14 561 336 8 1003 254 300 182 0 chr9 54856760 54856870 -69219302 - RMER15 LTR ERVL -443 132 3 8 1003 238 367 0 10 chr9 54856872 54856971 -69219201 + MTE-int LTR MaLR 22 119 -1461 8 1003 1597 315 89 48 chr9 54856984 54858061 -69218111 + Lx7 LINE L1 6320 7473 0 8 1003 1404 276 228 22 chr9 54858260 54858853 -69217319 + MTE-int LTR MaLR 806 1520 -60 8 1003 381 322 72 81 chr9 54858871 54859208 -69216964 + ORR1E LTR MaLR 28 377 -2 8 1003 631 269 158 9 chr9 54859741 54859962 -69216210 + MLT1A0 LTR MaLR 85 338 -27 8 1003 692 167 0 53 chr9 54859955 54860088 -69216084 - B1_Mur1 SINE Alu 0 149 24 8 1003 24 32 0 0 chr9 54860819 54860850 -69215322 + AT_rich Low_complexity Low_complexity 1 31 0 8 1003 1384 226 37 115 chr9 54860879 54861289 -69214883 + MTE2b LTR MaLR 2 379 0 8 1003 353 327 0 78 chr9 54861370 54861486 -69214686 - PB1D10 SINE Alu -2 115 9 8 1003 296 308 110 13 chr9 54862277 54862428 -69213744 + MIRb SINE MIR 47 205 -57 8 1003 269 372 8 50 chr9 54862450 54862569 -69213603 + ID_B1 SINE B4 63 176 -48 8 1003 398 242 40 20 chr9 54862487 54862588 -69213584 + B1F1 SINE Alu 13 115 -34 8 1003 495 0 0 0 chr9 54862629 54862684 -69213488 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1003 333 0 0 0 chr9 54862684 54862720 -69213452 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1003 692 268 7 0 chr9 54862728 54862870 -69213302 - B3A SINE B2 -55 143 1 8 1003 215 287 45 11 chr9 54864037 54864125 -69212047 - MIR3 SINE MIR 0 208 118 8 1003 510 233 0 25 chr9 54864987 54865106 -69211066 - PB1D10 SINE Alu -1 116 1 8 1003 548 143 10 0 chr9 54865354 54865452 -69210720 + CT-rich Low_complexity Low_complexity 2 100 0 8 1003 537 58 0 0 chr9 54865464 54865533 -69210639 + (TCC)n Simple_repeat Simple_repeat 3 71 0 8 1003 704 136 82 18 chr9 54865533 54865662 -69210510 - B1_Mus2 SINE Alu -7 141 4 8 1003 345 243 43 70 chr9 54865561 54865676 -69210496 - MT2B LTR ERVL -337 264 153 8 1003 2510 143 21 35 chr9 54865964 54866062 -69210110 + MTC LTR MaLR 1 99 -322 8 1003 8480 34 1 9 chr9 54866062 54867065 -69209107 + L1Md_F2 LINE L1 5588 6582 0 8 1003 2510 143 21 35 chr9 54867065 54867393 -69208779 + MTC LTR MaLR 100 421 0 8 1003 201 302 16 0 chr9 54867433 54867496 -69208676 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1003 377 336 86 93 chr9 54867513 54867792 -69208380 - B4 SINE B4 -13 279 3 8 1003 348 226 111 61 chr9 54867801 54867900 -69208272 + MER58B DNA MER1_type 176 279 -62 8 1003 315 0 0 0 chr9 54867944 54867979 -69208193 + (TTA)n Simple_repeat Simple_repeat 2 36 0 8 1003 260 351 8 42 chr9 54868019 54868138 -69208034 - MIR3 SINE MIR -51 157 43 8 1003 242 59 29 0 chr9 54869104 54869138 -69207034 - U2 snRNA snRNA -153 35 1 8 1003 401 161 136 0 chr9 54870481 54870562 -69205610 + B1F SINE Alu 42 133 -16 8 1003 563 300 53 0 chr9 54870664 54870834 -69205338 + B4A SINE B4 111 289 -3 8 1003 261 119 0 0 chr9 54870853 54870895 -69205277 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1003 535 286 126 35 chr9 54870903 54871102 -69205070 + ID_B1 SINE B4 2 218 -6 8 1003 308 216 0 0 chr9 54871500 54871551 -69204621 - B1_Mus2 SINE Alu -27 120 70 8 1003 814 201 0 7 chr9 54871588 54871738 -69204434 - B1_Mur2 SINE Alu 0 149 1 8 1003 232 271 51 20 chr9 54872462 54872560 -69203612 + MIRb SINE MIR 86 186 -82 8 1003 435 246 68 0 chr9 54872750 54872868 -69203304 - RSINE1 SINE B4 -17 148 23 8 1003 186 309 116 23 chr9 54873638 54873767 -69202405 + MIR3 SINE MIR 14 154 -54 8 1003 215 235 0 0 chr9 54874140 54874191 -69201981 + (CAG)n Simple_repeat Simple_repeat 3 53 0 8 1003 315 0 0 0 chr9 54874691 54874726 -69201446 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1003 232 247 24 12 chr9 54874766 54874848 -69201324 + L1MC5 LINE L1 7812 7894 -67 8 1003 325 262 0 12 chr9 54874891 54874972 -69201200 + ID4 SINE ID 4 83 0 8 1003 458 345 47 33 chr9 54875383 54875533 -69200639 - RSINE1 SINE B4 -11 154 3 8 1003 1578 38 21 0 chr9 54875563 54875749 -69200423 + B2_Mm1a SINE B2 2 191 -2 8 1003 1121 158 47 47 chr9 54876032 54876245 -69199927 + B3 SINE B2 1 213 -3 8 1003 2466 163 103 6 chr9 54876262 54876730 -69199442 + RLTR12B LTR ERVK 1 513 -15 8 1003 1191 68 0 0 chr9 54876752 54876898 -69199274 - B1_Mus2 SINE Alu -1 146 1 8 1003 396 0 0 0 chr9 54877075 54877119 -69199053 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1003 351 299 68 0 chr9 54877137 54877254 -69198918 - L2a LINE L2 -3 3423 3299 8 1003 1439 206 180 3 chr9 54878389 54878734 -69197438 + MTD LTR MaLR 1 406 -13 8 1003 406 291 132 5 chr9 54878749 54878939 -69197233 - MER2 DNA MER2_type -118 227 14 8 1003 300 269 64 46 chr9 54879839 54879948 -69196224 + MIRm SINE MIR 45 155 -121 8 1003 256 220 20 0 chr9 54880226 54880276 -69195896 + ID_B1 SINE B4 105 155 -69 8 1003 842 238 68 5 chr9 54880282 54880489 -69195683 + ID_B1 SINE B4 5 224 0 8 1003 282 278 0 0 chr9 54880679 54880733 -69195439 + ID_B1 SINE B4 145 198 -26 8 1003 969 241 19 211 chr9 54881235 54881699 -69194473 + MTD LTR MaLR 5 379 0 8 1003 600 343 104 13 chr9 54881964 54882348 -69193824 + LTR16E1 LTR ERVL 120 538 0 8 1003 223 357 40 29 chr9 54883576 54883749 -69192423 - MIR SINE MIR -38 224 50 8 1003 241 217 33 16 chr9 54883777 54883838 -69192334 - PB1 SINE Alu -20 107 46 8 1003 542 297 166 60 chr9 54884578 54884897 -69191275 - ORR1E LTR MaLR -6 353 1 8 1003 963 255 75 40 chr9 54884897 54885156 -69191016 - ORR1E-int LTR MaLR -53 1527 1259 8 1003 317 179 321 9 chr9 54885156 54885265 -69190907 + B3 SINE B2 1 143 -73 8 1003 1188 316 160 47 chr9 54885220 54885517 -69190655 - ORR1E-int LTR MaLR -763 817 481 8 1003 201 39 0 0 chr9 54885517 54885543 -69190629 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1003 1188 316 160 47 chr9 54885543 54885975 -69190197 - ORR1E-int LTR MaLR -1100 480 6 8 1003 733 325 65 77 chr9 54885987 54886340 -69189832 - ORR1E LTR MaLR -7 352 4 8 1003 270 0 0 0 chr9 54886401 54886431 -69189741 + (CAA)n Simple_repeat Simple_repeat 2 31 0 9 1003 339 78 0 0 chr9 54886538 54886589 -69189583 + (TC)n Simple_repeat Simple_repeat 1 51 0 9 1003 297 217 64 28 chr9 54887128 54887237 -69188935 - L1MEg LINE L1 -5266 818 706 9 1003 227 276 17 0 chr9 54887412 54887470 -69188702 - B4A SINE B4 -233 59 1 9 1003 1242 100 0 0 chr9 54887601 54887781 -69188391 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1003 394 254 0 73 chr9 54888188 54888311 -69187861 + PB1D10 SINE Alu 1 114 -3 9 1003 276 30 0 0 chr9 54888406 54888439 -69187733 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1003 595 276 55 29 chr9 54888469 54888741 -69187431 - B4A SINE B4 -13 279 1 9 1003 748 212 14 0 chr9 54888766 54888912 -69187260 + B1_Mus1 SINE Alu 1 148 0 9 1003 235 306 101 62 chr9 54890200 54890329 -69185843 + MLT1L LTR MaLR 139 272 -338 9 1003 232 324 77 28 chr9 54890392 54890535 -69185637 + MLT1L LTR MaLR 448 597 -13 9 1003 248 261 43 0 chr9 54890556 54890625 -69185547 - L2c LINE L2 -282 3105 3034 9 1003 950 54 129 15 chr9 54890943 54891075 -69185097 + B1_Mus2 SINE Alu 1 147 0 9 1003 688 251 6 0 chr9 54891075 54891413 -69184759 + GA-rich Low_complexity Low_complexity 1 339 0 9 1003 211 355 0 0 chr9 54891848 54891955 -69184217 + G-rich Low_complexity Low_complexity 1 107 0 9 1003 613 307 87 73 chr9 54892546 54892834 -69183338 + B4A SINE B4 1 292 0 9 1003 192 329 23 23 chr9 54893869 54893956 -69182216 - MIR SINE MIR -92 116 30 9 1003 1323 113 108 0 chr9 54894185 54894389 -69181783 + URR1A DNA MER1_type 1 226 0 9 1003 257 351 87 9 chr9 54895205 54895320 -69180852 - MER5A DNA MER1_type 0 189 66 9 1003 1051 134 0 0 chr9 54897543 54897692 -69178480 - B1_Mur2 SINE Alu 0 149 1 9 1003 24 0 0 0 chr9 54897699 54897723 -69178449 + AT_rich Low_complexity Low_complexity 1 24 0 9 1003 1196 76 0 0 chr9 54897912 54898056 -69178116 + B1_Mus2 SINE Alu 2 145 -2 9 1003 207 0 0 0 chr9 54898056 54898079 -69178093 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1003 721 226 227 14 chr9 54898311 54898531 -69177641 - B4A SINE B4 -21 271 5 9 1003 1271 169 24 5 chr9 54898608 54898816 -69177356 - URR1B DNA MER1_type -8 217 6 9 1003 307 299 68 57 chr9 54898955 54899132 -69177040 + MIR SINE MIR 84 262 0 9 1003 346 333 29 35 chr9 54899133 54899304 -69176868 + L1MC LINE L1 3709 3878 -2268 9 1003 261 237 13 38 chr9 54899467 54899546 -69176626 - MADE2 DNA Mariner -2 78 2 9 1003 303 249 45 58 chr9 54899560 54899731 -69176441 + L1M5 LINE L1 4155 4330 -1816 9 1003 840 202 80 21 chr9 54899737 54899924 -69176248 + B3A SINE B2 1 198 0 9 1003 748 261 89 0 chr9 54899988 54900191 -69175981 + ID_B1 SINE B4 2 222 -2 9 1003 321 318 90 26 chr9 54900381 54900536 -69175636 + L1M5 LINE L1 4502 4666 -1480 9 1003 405 349 64 56 chr9 54900597 54900846 -69175326 - MLT1A0 LTR MaLR -86 279 29 9 1003 360 0 0 0 chr9 54900895 54900935 -69175237 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 9 1003 582 271 46 0 chr9 54900942 54901093 -69175079 - ID_B1 SINE B4 -13 211 54 9 1003 2512 131 10 59 chr9 54901093 54901499 -69174673 + ORR1B1 LTR MaLR 1 386 -8 9 1003 258 263 18 0 chr9 54901503 54901560 -69174612 - ID SINE ID -166 58 1 9 1003 317 336 33 40 chr9 54901659 54901811 -69174361 + L1M5 LINE L1 5161 5311 -835 9 1003 337 202 127 0 chr9 54902440 54902519 -69173653 + B4A SINE B4 10 98 -194 9 1003 396 0 0 0 chr9 54903437 54903481 -69172691 + (T)n Simple_repeat Simple_repeat 1 44 0 9 1003 417 331 46 34 chr9 54904008 54904183 -69171989 + LTR33C LTR ERVL 84 260 -369 9 1003 2168 96 19 9 chr9 54904450 54904765 -69171407 + ORR1B2 LTR MaLR 1 318 -49 9 1003 3288 55 2 12 chr9 54904765 54905169 -69171003 + MTB LTR MaLR 1 400 0 9 1003 4515 112 35 30 chr9 54905169 54905913 -69170259 + MTB-int LTR MaLR 3 750 -508 9 1003 555 283 6 26 chr9 54905948 54905982 -69170190 - RSINE1 SINE B4 -12 153 122 9 1003 273 57 0 0 chr9 54905982 54906017 -69170155 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1003 555 283 6 26 chr9 54906017 54906138 -69170034 - RSINE1 SINE B4 -44 121 2 9 1003 23 0 0 0 chr9 54906281 54906304 -69169868 + AT_rich Low_complexity Low_complexity 1 23 0 9 1003 688 151 321 0 chr9 54906304 54906463 -69169709 - B3 SINE B2 -4 212 3 9 1003 1120 176 14 37 chr9 54906475 54906693 -69169479 - B3 SINE B2 0 216 4 9 1003 316 340 66 13 chr9 54908181 54908333 -69167839 + MIRb SINE MIR 1 160 -108 9 1003 1020 136 0 0 chr9 54908333 54908473 -69167699 + B1_Mus1 SINE Alu 2 141 -7 9 1003 441 0 0 0 chr9 54908474 54908523 -69167649 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1003 391 277 104 0 chr9 54908550 54908743 -69167429 + B4A SINE B4 1 230 -62 9 1003 518 299 109 0 chr9 54908743 54908890 -69167282 + RSINE1 SINE B4 3 165 0 9 1003 255 239 0 0 chr9 54908942 54909009 -69167163 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1003 330 115 0 19 chr9 54909010 54909063 -69167109 + HAL1-3A_ME LINE L1 1974 2025 -833 9 1003 517 207 18 26 chr9 54909475 54909589 -69166583 - PB1D9 SINE Alu -6 114 2 9 1003 214 113 0 101 chr9 54909693 54909772 -69166400 + GA-rich Low_complexity Low_complexity 1 71 0 9 1003 309 351 64 11 chr9 54909953 54910140 -69166032 - ORR1E LTR MaLR -162 197 1 9 1003 556 172 0 16 chr9 54910526 54910642 -69165530 - PB1D9 SINE Alu -28 121 14 9 1003 312 213 42 153 chr9 54910559 54910703 -69165469 - MT2B LTR ERVL -354 247 120 9 1003 381 102 0 0 chr9 54911580 54911639 -69164533 + (TC)n Simple_repeat Simple_repeat 1 59 0 9 1003 757 236 129 16 chr9 54911735 54912056 -69164116 + MTD LTR MaLR 18 419 0 9 1003 1371 47 0 0 chr9 54912132 54912303 -69163869 + (CA)n Simple_repeat Simple_repeat 1 171 0 9 1003 426 292 83 23 chr9 54912329 54912462 -69163710 + RSINE1 SINE B4 8 148 -17 9 1003 343 171 42 28 chr9 54912640 54912712 -69163460 + PB1D10 SINE Alu 45 117 0 9 1003 370 187 118 27 chr9 54913610 54913720 -69162452 - PB1D7 SINE Alu 0 120 1 9 1003 557 240 82 7 chr9 54914623 54914770 -69161402 - RSINE1 SINE B4 -5 160 3 9 1003 252 86 0 0 chr9 54914880 54914915 -69161257 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 9 1003 432 281 53 64 chr9 54914959 54915130 -69161042 + Charlie1a DNA MER1_type 880 1048 -407 9 1003 288 291 0 0 chr9 54916369 54916424 -69159748 - ID4_ SINE ID -6 77 23 9 1003 1784 190 70 44 chr9 54916744 54917174 -69158998 + RMER10A LTR ERVL 1 441 -1 9 1003 731 275 32 64 chr9 54917174 54917529 -69158643 + RLTR11B LTR ERVK 91 459 -69 9 1003 494 306 135 0 chr9 54917590 54917760 -69158412 + Lx8 LINE L1 7135 7327 -146 9 1003 743 237 77 0 chr9 54917792 54917986 -69158186 + B3 SINE B2 2 210 -6 9 1003 3729 42 5 2 chr9 54918576 54919011 -69157161 - RLTR10C LTR ERVK 0 436 1 9 125 44829 20 0 11 chr9 54919011 54924095 -69152077 - MMERVK10C-int LTR ERVK 0 7581 2552 9 1004 379 95 0 0 chr9 54924101 54924164 -69152008 - MMERVK10C-int LTR ERVK -5634 1947 1885 9 1004 309 175 0 0 chr9 54924169 54924226 -69151946 - MMERVK10C-int LTR ERVK -4261 1145 1089 9 1004 662 250 144 67 chr9 54924226 54924597 -69151575 - MMERVK10C-int LTR ERVK -4819 2425 2079 9 1004 907 148 4 177 chr9 54924690 54924961 -69151211 - MMERVK10C-int LTR ERVK -6629 952 729 9 1004 2864 58 0 0 chr9 54924959 54925302 -69150870 - MMERVK10C-int LTR ERVK -7238 343 1 9 1004 3729 42 5 2 chr9 54925302 54925737 -69150435 - RLTR10C LTR ERVK 0 436 1 9 1004 249 75 37 19 chr9 54927161 54927215 -69148957 + (CCCCCA)n Simple_repeat Simple_repeat 3 57 0 9 1004 221 307 64 64 chr9 54927556 54927650 -69148522 - B1_Mur1 SINE Alu -8 141 48 9 1004 242 235 19 19 chr9 54927601 54927653 -69148519 - MT2B2 LTR ERVL -331 253 202 9 1004 183 307 88 44 chr9 54927956 54928116 -69148056 + MIR3 SINE MIR 13 179 -29 9 1004 186 71 0 0 chr9 54928910 54928938 -69147234 + (G)n Simple_repeat Simple_repeat 1 28 0 9 1004 330 26 0 0 chr9 54929755 54929794 -69146378 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1004 1767 117 21 121 chr9 54929799 54930276 -69145896 + RMER17C LTR ERVK 16 439 -519 9 1004 306 0 0 0 chr9 54930280 54930314 -69145858 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1004 708 255 86 41 chr9 54930333 54930578 -69145594 - B4A SINE B4 -35 257 2 9 1004 234 311 120 24 chr9 54930821 54930946 -69145226 - MamGypLTR1c LTR Gypsy -666 137 1 9 1004 306 87 0 0 chr9 54933025 54933071 -69143101 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1004 924 171 210 0 chr9 54933442 54933618 -69142554 - B3 SINE B2 -1 215 3 9 1004 1354 243 74 6 chr9 54933618 54933982 -69142190 - RCHARR1 DNA MER1_type -35 939 551 9 1004 1190 68 0 0 chr9 54934247 54934395 -69141777 + B1_Mus1 SINE Alu 1 148 0 9 1004 602 216 17 111 chr9 54934407 54934579 -69141593 + RSINE1 SINE B4 10 165 0 9 1004 1287 60 35 84 chr9 54934610 54934812 -69141360 + B2_Mm2 SINE B2 4 195 0 9 1004 4100 162 99 96 chr9 54934850 54935540 -69140632 - RMER19B LTR ERVK 0 902 161 9 1004 982 150 37 11 chr9 54935540 54935729 -69140443 - B2_Mm2 SINE B2 0 195 2 9 1004 4100 162 99 96 chr9 54935729 54935937 -69140235 - RMER19B LTR ERVK -742 160 1 9 1004 295 180 98 0 chr9 54936213 54936274 -69139898 - RCHARR1 DNA MER1_type -425 549 483 9 1004 477 137 0 0 chr9 54936293 54936366 -69139806 - B1_Mur1 SINE Alu -1 148 76 9 1004 645 301 11 54 chr9 54936355 54936433 -69139739 - RCHARR1 DNA MER1_type -771 203 125 9 1004 338 0 0 23 chr9 54936433 54936476 -69139696 + (TTA)n Simple_repeat Simple_repeat 2 43 0 9 1004 901 146 22 0 chr9 54936476 54936613 -69139559 - B1_Mur4 SINE Alu -10 140 1 9 1004 645 301 11 54 chr9 54936613 54936719 -69139453 - RCHARR1 DNA MER1_type -850 124 27 9 1004 455 210 35 11 chr9 54936775 54936888 -69139284 + B1_Mur2 SINE Alu 1 149 0 9 1004 764 193 57 67 chr9 54936894 54937088 -69139084 + B2_Mm2 SINE B2 2 193 -2 9 1004 417 39 0 0 chr9 54937438 54937489 -69138683 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1004 544 200 25 151 chr9 54937585 54937744 -69138428 - B1_Mur1 SINE Alu -10 139 1 9 1004 315 191 0 0 chr9 54938380 54938448 -69137724 + CT-rich Low_complexity Low_complexity 2 69 0 9 1004 758 223 13 151 chr9 54938693 54938931 -69137241 + ID_B1 SINE B4 2 206 -18 9 1004 1142 89 0 0 chr9 54939444 54939581 -69136591 + B1_Mus1 SINE Alu 3 139 -9 9 1004 197 33 33 0 chr9 54939581 54939611 -69136561 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1004 1741 137 113 76 chr9 54939852 54940222 -69135950 + ORR1C2 LTR MaLR 1 384 0 1 1004 273 288 55 0 chr9 54940424 54940497 -69135675 + MER58C DNA MER1_type 135 211 -4 1 1004 361 240 77 42 chr9 54940668 54940860 -69135312 - L1MB4 LINE L1 -41 6133 5946 1 1004 332 206 65 0 chr9 54940882 54940974 -69135198 - L1MB4 LINE L1 -297 5883 5786 1 1004 816 231 74 57 chr9 54941031 54941260 -69134912 + B4 SINE B4 1 233 -59 1 1004 325 0 0 43 chr9 54941297 54941344 -69134828 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1004 180 0 0 0 chr9 54941577 54941597 -69134575 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1004 773 212 0 0 chr9 54941597 54941734 -69134438 - B1_Mur4 SINE Alu -13 137 1 1 1004 21 0 0 0 chr9 54941743 54941764 -69134408 + AT_rich Low_complexity Low_complexity 1 21 0 1 1004 981 276 133 0 chr9 54941783 54942077 -69134095 + RMER1C Other Other 535 867 -475 1 1004 928 98 6 6 chr9 54943208 54943356 -69132816 - B1_Mm SINE Alu 0 149 2 1 1004 1466 120 0 0 chr9 54943392 54943592 -69132580 + L1VL2 LINE L1 66 265 -6070 1 1004 801 255 166 55 chr9 54944181 54944525 -69131647 - MTE2b LTR MaLR 0 379 2 1 1004 225 65 0 0 chr9 54945753 54945784 -69130388 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1004 195 42 0 0 chr9 54945786 54945810 -69130362 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1004 495 302 0 16 chr9 54945866 54945987 -69130185 - PB1D7 SINE Alu 0 120 2 1 1004 408 256 152 120 chr9 54945987 54946062 -69130110 - ID_B1 SINE B4 -120 104 24 1 1004 21 57 0 0 chr9 54947198 54947233 -69128939 + AT_rich Low_complexity Low_complexity 1 35 0 1 1004 403 265 174 32 chr9 54947604 54947822 -69128350 + MLT1A LTR MaLR 117 374 0 1 1004 304 167 86 57 chr9 54947889 54947959 -69128213 - B4A SINE B4 -17 275 204 1 1004 474 275 182 30 chr9 54948425 54948728 -69127444 + MLT1A0 LTR MaLR 1 349 -16 1 1004 783 274 42 6 chr9 54949251 54949416 -69126756 + ID_B1 SINE B4 12 182 -42 1 1004 621 161 47 1 chr9 54949417 54949537 -69126635 - ORR1D2 LTR MaLR 0 374 246 1 1004 342 0 0 0 chr9 54949605 54949643 -69126529 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1004 736 260 91 5 chr9 54950099 54950296 -69125876 - ORR1D2 LTR MaLR -156 214 1 1 1004 581 235 17 0 chr9 54950417 54950451 -69125721 + ID SINE ID 47 82 -142 1 1004 295 302 33 41 chr9 54950451 54950572 -69125600 + PB1D7 SINE Alu 1 120 0 1 1004 4564 159 50 29 chr9 54951042 54951877 -69124295 + RLTR25B LTR ERVK 1 853 -175 1 1004 416 264 34 54 chr9 54952019 54952167 -69124005 - RLTR23 LTR ERV1 0 430 286 1 1004 329 145 15 61 chr9 54952830 54952896 -69123276 + RLTR25B LTR ERVK 873 935 -93 1 1004 1106 82 20 0 chr9 54952950 54953097 -69123075 - B1_Mur4 SINE Alu 0 150 1 1 1004 234 364 0 0 chr9 54953155 54953320 -69122852 + (CA)n Simple_repeat Simple_repeat 1 165 0 1 1004 557 235 0 0 chr9 54953619 54953717 -69122455 + RSINE1 SINE B4 1 98 -67 1 1004 216 111 0 0 chr9 54953764 54953800 -69122372 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1004 2285 87 15 58 chr9 54953866 54954208 -69121964 + ORR1A2 LTR MaLR 1 327 0 1 1004 524 320 159 18 chr9 54954635 54954861 -69121311 + MIR SINE MIR 1 258 -4 1 1004 489 274 170 0 chr9 54954894 54955029 -69121143 + RSINE1 SINE B4 6 163 -2 1 1004 1958 206 48 83 chr9 54955203 54955685 -69120487 - RMER5 LTR ERV1 0 534 70 1 1004 1108 136 15 25 chr9 54955801 54955997 -69120175 + B2_Mm2 SINE B2 1 194 -1 1 1004 226 316 63 0 chr9 54957029 54957108 -69119064 - MLT1A0 LTR MaLR -279 86 3 1 1004 309 312 72 7 chr9 54957141 54957280 -69118892 + B1F SINE Alu 1 148 -1 1 1004 192 77 0 0 chr9 54957287 54957313 -69118859 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1004 300 243 40 0 chr9 54958188 54958262 -69117910 + MER94 DNA AcHobo 41 117 -17 1 1004 200 227 29 29 chr9 54958363 54958431 -69117741 + (CCCCG)n Simple_repeat Simple_repeat 2 69 0 1 1004 1633 37 11 0 chr9 54958892 54959082 -69117090 - B2_Mm1t SINE B2 0 193 2 1 1004 216 0 0 0 chr9 54959679 54959703 -69116469 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1 1004 998 58 0 105 chr9 54959703 54959856 -69116316 - B1_Mur4 SINE Alu -13 137 1 1 1004 311 284 129 36 chr9 54960596 54960735 -69115437 + B4A SINE B4 2 153 -139 1 1004 465 246 0 17 chr9 54961236 54961352 -69114820 + L1M2 LINE L1 3676 3789 -2354 1 1004 559 263 0 63 chr9 54961611 54961668 -69114504 - RSINE1 SINE B4 -31 134 85 1 1004 1523 132 287 38 chr9 54961668 54962037 -69114135 - RMER6B LTR ERVK 0 461 1 1 1004 559 263 0 63 chr9 54962037 54962121 -69114051 - RSINE1 SINE B4 -81 84 2 1 1004 194 337 12 0 chr9 54963144 54963227 -69112945 - L2c LINE L2 -57 3330 3247 1 1004 656 261 193 44 chr9 54963383 54963632 -69112540 + B4 SINE B4 7 292 0 1 1004 340 297 35 18 chr9 54964009 54964122 -69112050 + L1M2 LINE L1 5254 5368 -756 1 1004 267 203 0 0 chr9 54964147 54964216 -69111956 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1004 307 54 0 0 chr9 54964224 54964261 -69111911 + HAL1-3A_ME LINE L1 1982 2018 -840 1 1004 330 333 47 59 chr9 54964269 54964505 -69111667 + B4A SINE B4 19 251 -41 1 1004 1641 31 0 15 chr9 54964507 54964702 -69111470 + B2_Mm1t SINE B2 2 193 0 1 1004 198 143 0 0 chr9 54964784 54964819 -69111353 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1004 1579 47 0 10 chr9 54964868 54965062 -69111110 + B2_Mm1a SINE B2 1 192 -1 1 1004 1722 159 144 11 chr9 54965069 54965440 -69110732 - ORR1A4 LTR MaLR 0 394 1 1 1004 2796 46 0 31 chr9 54965806 54965951 -69110221 + ORR1A0 LTR MaLR 1 145 -201 1 1004 4303 43 48 0 chr9 54965951 54966487 -69109685 - L1Md_F3 LINE L1 0 6584 6023 1 1004 2796 46 0 31 chr9 54966487 54966698 -69109474 + ORR1A0 LTR MaLR 146 346 0 1 1004 14160 49 16 2 chr9 54966698 54968465 -69107707 + ORR1A0-int LTR MaLR 1 1792 0 1 1004 3066 32 0 0 chr9 54968465 54968811 -69107361 + ORR1A0 LTR MaLR 1 346 0 1 1004 899 175 54 5 chr9 54968832 54969016 -69107156 + B2_Mm2 SINE B2 1 193 -2 1 1004 629 221 159 6 chr9 54969158 54969340 -69106832 + B3 SINE B2 2 211 -5 1 1004 771 156 98 60 chr9 54969607 54969791 -69106381 - B2_Mm2 SINE B2 -4 191 1 1 1004 2791 105 35 23 chr9 54969826 54970256 -69105916 - Lx LINE L1 -25 6629 6195 1 1004 919 167 26 31 chr9 54971579 54971934 -69104238 + MT2A LTR ERVL 147 548 -7 1 1004 458 310 16 105 chr9 54972036 54972227 -69103945 - RLTR33 LTR ERVK -36 642 469 1 1004 242 185 33 100 chr9 54972293 54972353 -69103819 - RLTR19C LTR ERVK -388 118 63 1 1004 1045 130 177 0 chr9 54972465 54972657 -69103515 - URR1A DNA MER1_type 0 226 1 1 1004 467 273 88 38 chr9 54972689 54972849 -69103323 + MER117 DNA MER1_type 9 176 -21 1 1004 439 277 109 0 chr9 54972871 54972990 -69103182 - B4A SINE B4 -152 140 9 1 1004 316 271 28 106 chr9 54973407 54973626 -69102546 + ORR1D1 LTR MaLR 1 197 -162 1 1004 701 286 68 41 chr9 54973728 54973994 -69102178 + B4A SINE B4 2 274 -18 1 1004 1032 260 119 14 chr9 54974073 54974444 -69101728 - L1MB2 LINE L1 -38 6133 5724 1 1004 321 26 0 0 chr9 54974460 54974498 -69101674 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1 1004 843 94 68 0 chr9 54974511 54974628 -69101544 - B2_Mm2 SINE B2 -70 125 1 1 1004 262 320 53 0 chr9 54974981 54975114 -69101058 + L1M4 LINE L1 5545 5688 -552 1 1004 2256 93 15 50 chr9 54975209 54975489 -69100683 + ORR1A2 LTR MaLR 1 285 -42 1 1004 4087 132 80 28 chr9 54975489 54976180 -69099992 + Lx LINE L1 5928 6654 0 1 1004 2256 93 15 50 chr9 54976180 54976238 -69099934 + ORR1A2 LTR MaLR 286 327 0 1 1004 276 288 27 14 chr9 54976674 54976748 -69099424 - MIRc SINE MIR -113 155 81 1 1004 360 0 0 0 chr9 54977424 54977464 -69098708 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1004 183 231 0 0 chr9 54977560 54977599 -69098573 - L2 LINE L2 -586 2833 2795 1 1004 1737 141 11 0 chr9 54978120 54978403 -69097769 - Lx2A1 LINE L1 -6 7002 6717 1 1004 1037 274 11 23 chr9 54978464 54978726 -69097446 + B4A SINE B4 2 260 -32 1 1004 480 18 0 0 chr9 54978774 54978831 -69097341 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1004 707 182 95 0 chr9 54978978 54979104 -69097068 + B1_Mur4 SINE Alu 3 140 -10 1 1004 378 0 0 0 chr9 54979104 54979146 -69097026 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1004 560 215 157 0 chr9 54979583 54979704 -69096468 + RSINE1 SINE B4 3 142 -23 1 1004 1878 103 116 50 chr9 54979765 54980051 -69096121 + ORR1B2 LTR MaLR 1 324 -43 1 1004 1719 21 0 0 chr9 54980051 54980244 -69095928 + B2_Mm1a SINE B2 1 193 0 1 1004 1878 103 116 50 chr9 54980244 54980294 -69095878 + ORR1B2 LTR MaLR 325 359 -8 1 1004 300 162 0 56 chr9 54980329 54980401 -69095771 + B4 SINE B4 163 230 -62 1 1004 411 21 0 0 chr9 54980402 54980450 -69095722 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1004 289 316 102 32 chr9 54980461 54980618 -69095554 + MIR SINE MIR 34 201 -61 1 1004 567 348 77 40 chr9 54981173 54981472 -69094700 - Charlie10 DNA MER1_type -197 2625 2316 1 1004 804 185 0 0 chr9 54981485 54981647 -69094525 + (TA)n Simple_repeat Simple_repeat 2 163 0 1 1004 1846 195 89 5 chr9 54981702 54982087 -69094085 + MTD LTR MaLR 1 405 -14 1 1004 715 306 238 52 chr9 54982097 54982869 -69093303 - Charlie10 DNA MER1_type -600 2222 1307 1 1004 490 186 0 126 chr9 54983153 54983216 -69092956 - PB1D9 SINE Alu -5 115 60 1 1004 1087 66 0 29 chr9 54983216 54983356 -69092816 + B1_Mus2 SINE Alu 1 136 -11 1 1004 342 0 0 0 chr9 54983357 54983395 -69092777 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1 1004 490 186 0 126 chr9 54983395 54983440 -69092732 - PB1D9 SINE Alu -61 59 19 1 1004 232 277 0 0 chr9 54983462 54983509 -69092663 - B4A SINE B4 -4 288 242 1 1004 231 114 0 0 chr9 54983523 54983558 -69092614 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 1 1004 949 250 0 5 chr9 54983559 54983756 -69092416 - B4A SINE B4 -64 228 33 1 1004 210 143 0 0 chr9 54985223 54985258 -69090914 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1 1004 218 32 32 0 chr9 54985478 54985509 -69090663 + (TCC)n Simple_repeat Simple_repeat 3 34 0 1 1004 957 218 166 60 chr9 54985509 54985677 -69090495 + MTD LTR MaLR 18 209 -210 1 1004 483 190 87 81 chr9 54985677 54985826 -69090346 + B1_Mur4 SINE Alu 1 150 0 1 1004 957 218 166 60 chr9 54985826 54985959 -69090213 + MTD LTR MaLR 210 351 -68 1 1004 391 258 0 0 chr9 54985987 54986076 -69090096 - B4 SINE B4 -128 164 76 1 1004 670 119 9 35 chr9 54986094 54986207 -69089965 - B1_Mur3 SINE Alu 0 149 40 1 1004 345 307 96 78 chr9 54986101 54986320 -69089852 - B4 SINE B4 -69 223 1 1 1004 673 261 114 46 chr9 54986324 54986561 -69089611 + MER67B LTR ERV1 113 365 -296 1 1004 604 213 36 14 chr9 54986641 54986779 -69089393 + MER67B LTR ERV1 512 652 -9 1 1004 1029 117 0 0 chr9 54987186 54987331 -69088841 + B1_Mur4 SINE Alu 6 150 0 1 1004 314 128 9 52 chr9 54987332 54987447 -69088725 + (CAAA)n Simple_repeat Simple_repeat 2 111 0 1 1004 607 296 8 127 chr9 54988617 54988853 -69087319 + B4A SINE B4 1 208 -84 1 1004 332 197 14 14 chr9 54988881 54988953 -69087219 + ID4_ SINE ID 1 72 -11 1 1004 700 259 107 36 chr9 54989346 54989362 -69086810 - B4A SINE B4 0 292 277 1 1004 378 0 0 0 chr9 54989362 54989404 -69086768 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1004 700 259 107 36 chr9 54989404 54989583 -69086589 - B4A SINE B4 -16 276 83 1 1004 1328 85 32 0 chr9 54989940 54990096 -69086076 + B2_Mm2 SINE B2 2 157 -38 1 1004 213 39 0 0 chr9 54990096 54990122 -69086050 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1 1004 1328 85 32 0 chr9 54990122 54990153 -69086019 + B2_Mm2 SINE B2 158 194 -1 1 1004 1194 61 0 0 chr9 54990172 54990319 -69085853 + B1_Mus2 SINE Alu 1 147 0 1 1004 463 98 22 0 chr9 54990345 54990437 -69085735 + (TC)n Simple_repeat Simple_repeat 2 95 0 1 1004 333 0 0 0 chr9 54990456 54990493 -69085679 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1004 4498 157 88 13 chr9 54990521 54991349 -69084823 + RMER19B LTR ERVK 1 890 -12 1 1004 202 29 57 0 chr9 54991394 54991429 -69084743 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1004 391 306 12 0 chr9 54991452 54991537 -69084635 - B4 SINE B4 -124 168 83 1 1004 1182 171 52 0 chr9 54991572 54991783 -69084389 - MTD LTR MaLR -2 417 196 1 1004 270 81 0 0 chr9 54991783 54991820 -69084352 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1004 1147 95 0 0 chr9 54991820 54991968 -69084204 - B1_Mus1 SINE Alu 0 148 1 1 1004 568 204 0 0 chr9 54991971 54992069 -69084103 - MTD LTR MaLR -213 206 109 1 1004 7214 94 24 78 chr9 54992069 54992483 -69083689 + Lx LINE L1 5384 5791 -92 1 1004 1186 68 7 0 chr9 54992483 54992630 -69083542 + B1_Mus1 SINE Alu 1 148 0 1 1004 7214 78 47 58 chr9 54992630 54993498 -69082674 + Lx LINE L1 5792 6654 0 1 1004 607 149 50 42 chr9 54993543 54993647 -69082525 - MTD LTR MaLR -299 120 18 1 1004 645 14 0 0 chr9 54993647 54993721 -69082451 + (CAAG)n Simple_repeat Simple_repeat 2 75 0 1 1004 607 149 50 42 chr9 54993721 54993735 -69082437 - MTD LTR MaLR -402 17 1 1 1004 231 338 86 50 chr9 54993744 54993884 -69082288 - RSINE1 SINE B4 -17 148 4 1 1004 417 204 0 31 chr9 54993887 54993983 -69082189 - B4 SINE B4 -199 93 1 1 1004 599 247 16 40 chr9 54994267 54994500 -69081672 + B4 SINE B4 30 292 0 1 1004 426 343 21 7 chr9 54994874 54995015 -69081157 + MLT1L LTR MaLR 446 588 -22 1 1004 225 0 0 0 chr9 54995306 54995331 -69080841 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1004 861 166 22 0 chr9 54995791 54995930 -69080242 + B1_Mur2 SINE Alu 7 148 -1 1 1004 883 113 49 14 chr9 54995943 54996087 -69080085 + B1_Mur4 SINE Alu 1 149 -1 1 1004 495 258 25 16 chr9 54996088 54996210 -69079962 - MER45R DNA Tip100 -1458 123 1 1 1004 207 269 16 32 chr9 54996991 54997114 -69079058 + G-rich Low_complexity Low_complexity 3 123 0 1 1004 210 128 0 0 chr9 54997224 54997263 -69078909 + (CTCG)n Simple_repeat Simple_repeat 4 42 0 1 1004 33 66 0 0 chr9 54997342 54997403 -69078769 + GC_rich Low_complexity Low_complexity 1 61 0 1 1004 240 143 20 20 chr9 54997560 54997610 -69078562 + (CCG)n Simple_repeat Simple_repeat 3 52 0 1 1004 854 169 89 11 chr9 54998883 54999062 -69077110 + MTD LTR MaLR 1 193 -226 1 1004 210 206 0 0 chr9 54999091 54999154 -69077018 + GA-rich Low_complexity Low_complexity 4 66 0 1 1004 616 80 76 48 chr9 54999156 54999261 -69076911 + B1_Mur4 SINE Alu 41 148 -2 1 1004 755 184 87 105 chr9 54999284 54999511 -69076661 + MTD LTR MaLR 182 411 -8 1 1004 344 224 168 0 chr9 55000370 55000513 -69075659 - L1MC5 LINE L1 -107 7854 7688 1 1004 22 0 0 0 chr9 55001045 55001067 -69075105 + AT_rich Low_complexity Low_complexity 1 22 0 2 1004 269 339 62 56 chr9 55001474 55001652 -69074520 - Charlie19a DNA Charlie -188 198 20 3 1004 444 259 118 25 chr9 55001654 55001773 -69074399 - B1F1 SINE Alu -6 143 14 4 1004 1180 275 7 40 chr9 55001844 55002140 -69074032 - B4 SINE B4 0 292 7 5 1004 366 104 88 15 chr9 55002162 55002230 -69073942 - HAL1-3A_ME LINE L1 -809 2049 1977 6 1004 225 0 0 0 chr9 55002234 55002259 -69073913 + (CGTG)n Simple_repeat Simple_repeat 4 28 0 7 1004 22 35 0 0 chr9 55002575 55002604 -69073568 + AT_rich Low_complexity Low_complexity 1 29 0 8 1004 418 290 49 49 chr9 55002615 55002778 -69073394 - B4 SINE B4 -129 163 1 9 1004 284 162 200 59 chr9 55002799 55002884 -69073288 - ID_B1 SINE B4 -5 219 123 1 1004 220 214 0 125 chr9 55003355 55003403 -69072769 + ID4_ SINE ID 13 54 -29 1 1004 484 244 122 0 chr9 55004440 55004571 -69071601 - B1_Mm SINE Alu 0 147 1 1 1004 1845 161 133 3 chr9 55005140 55005494 -69070678 + MTC LTR MaLR 1 400 -21 1 1004 318 258 75 15 chr9 55005643 55005777 -69070395 - Charlie1 DNA MER1_type -5 2776 2635 1 1004 35 83 0 0 chr9 55005834 55005918 -69070254 + AT_rich Low_complexity Low_complexity 1 84 0 1 1004 1078 64 43 0 chr9 55005974 55006114 -69070058 - B1_Mus2 SINE Alu 0 147 2 1 1004 824 196 94 11 chr9 55006122 55006313 -69069859 - B3 SINE B2 -8 208 2 1 1004 249 200 117 96 chr9 55006320 55006414 -69069758 - Charlie1 DNA MER1_type -351 2430 2335 1 1004 347 188 14 14 chr9 55006432 55006502 -69069670 - ID4 SINE ID -10 73 4 1 1004 1088 271 111 34 chr9 55006560 55007056 -69069116 - Charlie1 DNA MER1_type -593 2188 1655 1 1004 186 196 20 61 chr9 55007382 55007431 -69068741 + MIR SINE MIR 87 133 -75 1 1004 369 62 0 0 chr9 55007790 55007838 -69068334 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1004 192 77 0 0 chr9 55008013 55008039 -69068133 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1004 216 0 0 0 chr9 55008182 55008206 -69067966 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1004 484 80 13 26 chr9 55008206 55008283 -69067889 - B1_Mus2 SINE Alu 0 147 72 2 1004 688 213 49 16 chr9 55008358 55008531 -69067641 - B3 SINE B2 -6 210 13 2 1004 653 245 52 0 chr9 55008547 55008739 -69067433 - B3 SINE B2 -14 202 1 2 1004 941 327 116 69 chr9 55008741 55009234 -69066938 - MLT1F2 LTR MaLR -38 522 7 2 1004 264 291 69 24 chr9 55009411 55009503 -69066669 + ID4 SINE ID 5 93 -59 2 1004 337 200 138 23 chr9 55009593 55009680 -69066492 + PB1D10 SINE Alu 21 117 0 2 1004 522 0 0 0 chr9 55009773 55009831 -69066341 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1004 583 218 36 29 chr9 55009851 55009988 -69066184 - B3A SINE B2 -57 141 4 3 1004 1405 75 5 0 chr9 55011259 55011446 -69064726 - B2_Mm2 SINE B2 -6 189 2 3 1004 267 241 173 18 chr9 55011550 55011660 -69064512 - Tigger7 DNA MER2_type -3 2488 2362 3 1004 714 224 53 27 chr9 55011820 55012008 -69064164 + B3A SINE B2 3 195 -3 3 1004 353 298 156 19 chr9 55012049 55012319 -69063853 - L1ME4a LINE L1 0 6124 5818 3 1004 556 230 9 0 chr9 55012671 55012784 -69063388 - PB1D10 SINE Alu 0 117 4 3 1004 427 261 57 14 chr9 55013106 55013246 -69062926 + RSINE1 SINE B4 2 147 -18 3 1004 370 290 19 9 chr9 55013461 55013569 -69062603 + PB1D10 SINE Alu 1 109 -8 3 1004 216 188 0 0 chr9 55013651 55013699 -69062473 + A-rich Low_complexity Low_complexity 1 48 0 3 1004 473 313 125 7 chr9 55017228 55017508 -69058664 - HAL1 LINE L1 -903 1604 1292 3 1004 251 301 161 42 chr9 55017569 55017687 -69058485 - ID_B1 SINE B4 -2 222 91 4 1004 202 146 24 0 chr9 55017745 55017786 -69058386 + T-rich Low_complexity Low_complexity 6 47 0 4 1004 756 219 39 13 chr9 55017790 55017943 -69058229 - RSINE1 SINE B4 -1 164 8 4 1004 678 184 194 6 chr9 55018030 55018200 -69057972 - B3 SINE B2 -13 203 2 4 1004 221 292 20 59 chr9 55018224 55018326 -69057846 + PB1D7 SINE Alu 15 112 -8 4 1004 279 358 103 26 chr9 55018293 55018337 -69057835 + B4A SINE B4 32 87 -205 4 1004 552 253 8 43 chr9 55018337 55018464 -69057708 + PB1D9 SINE Alu 2 120 0 4 1004 480 217 27 80 chr9 55018811 55018961 -69057211 - B1_Mus2 SINE Alu 0 147 6 4 1004 449 217 20 0 chr9 55020229 55020355 -69055817 - B4 SINE B4 -81 211 41 4 1004 352 310 9 115 chr9 55020509 55020735 -69055437 - L1M5 LINE L1 -339 5823 5622 4 1004 191 167 0 53 chr9 55021392 55021449 -69054723 + T-rich Low_complexity Low_complexity 1 54 0 5 1004 515 188 109 66 chr9 55022135 55022272 -69053900 - B1F SINE Alu -3 146 4 5 1004 180 250 0 0 chr9 55022458 55022494 -69053678 + MER5B DNA MER1_type 19 54 -124 5 1004 266 211 115 10 chr9 55022502 55022598 -69053574 - Lx9 LINE L1 -7 7637 7532 5 1004 252 59 0 0 chr9 55022611 55022645 -69053527 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1004 694 217 221 37 chr9 55022673 55022998 -69053174 - Lx9 LINE L1 -260 7384 7000 5 1004 372 22 0 0 chr9 55024120 55024165 -69052007 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1004 441 297 14 72 chr9 55024176 55024314 -69051858 - RSINE1 SINE B4 -33 132 3 5 1004 986 249 90 49 chr9 55024584 55024850 -69051322 + B4A SINE B4 4 280 -12 5 1004 255 61 0 0 chr9 55024862 55024895 -69051277 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 1004 238 196 0 38 chr9 55024999 55025052 -69051120 - MLT1A1 LTR MaLR -4 404 354 5 1004 414 348 28 28 chr9 55025108 55025253 -69050919 - MLT1A1 LTR MaLR -193 215 71 5 1004 771 146 43 28 chr9 55025260 55025401 -69050771 - B1_Mus1 SINE Alu 0 148 6 6 1004 23 0 0 0 chr9 55025401 55025424 -69050748 + AT_rich Low_complexity Low_complexity 1 23 0 6 1004 312 293 90 25 chr9 55025425 55025702 -69050470 - Lx9 LINE L1 -1 7643 7349 6 1004 847 262 67 9 chr9 55025702 55026044 -69050128 - Lx9 LINE L1 -753 6891 6530 6 1004 766 262 28 18 chr9 55027409 55027627 -69048545 + ID_B1 SINE B4 3 222 -2 6 1004 1145 58 0 0 chr9 55027773 55027910 -69048262 + B1_Mus1 SINE Alu 1 137 -11 6 1004 197 33 33 0 chr9 55027910 55027940 -69048232 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1004 1242 240 17 127 chr9 55028634 55029044 -69047128 + MTE2a LTR MaLR 1 365 -14 6 1004 642 200 33 8 chr9 55029248 55029369 -69046803 - B1_Mur1 SINE Alu -15 134 11 6 1004 189 312 48 106 chr9 55029924 55030028 -69046144 - MIRb SINE MIR -49 219 122 6 1004 520 281 151 68 chr9 55030045 55030297 -69045875 + B4A SINE B4 2 274 -18 6 1004 453 145 0 0 chr9 55030346 55030422 -69045750 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1004 295 260 0 27 chr9 55030540 55030615 -69045557 - RSINE1 SINE B4 0 165 93 7 1004 214 316 86 25 chr9 55031084 55031165 -69045007 - PB1D10 SINE Alu -26 91 6 7 1004 879 159 7 33 chr9 55031303 55031453 -69044719 - B1_Mus1 SINE Alu 0 148 3 7 1004 351 0 0 0 chr9 55031475 55031514 -69044658 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1004 1351 76 16 21 chr9 55031521 55031709 -69044463 + B2_Mm2 SINE B2 1 187 -8 7 1004 216 269 0 162 chr9 55031958 55032038 -69044134 + ID4_ SINE ID 3 69 -14 7 1004 560 258 67 62 chr9 55032187 55032381 -69043791 + B3A SINE B2 2 196 -2 7 1004 375 214 135 43 chr9 55033685 55033794 -69042378 - PB1D9 SINE Alu 0 120 1 7 1004 3342 45 0 0 chr9 55035029 55035425 -69040747 - MTA_Mm LTR MaLR 0 396 1 7 1004 9255 36 0 0 chr9 55035425 55036523 -69039649 - MTA_Mm-int LTR MaLR 0 1098 1 7 1004 3430 35 0 0 chr9 55036523 55036919 -69039253 - MTA_Mm LTR MaLR 0 396 1 7 1004 672 274 11 0 chr9 55037616 55037795 -69038377 - B4A SINE B4 -76 216 36 8 1004 986 130 19 0 chr9 55038069 55038231 -69037941 - URR1A DNA MER1_type 0 226 62 8 1004 333 291 36 0 chr9 55038433 55038543 -69037629 - PB1D7 SINE Alu -5 115 2 8 1004 340 280 118 7 chr9 55039758 55039902 -69036270 - MER5A DNA MER1_type -27 162 3 8 1004 255 273 44 29 chr9 55039986 55040054 -69036118 + PB1D10 SINE Alu 15 83 -34 8 1004 638 316 82 71 chr9 55040425 55040609 -69035563 + B3A SINE B2 1 186 -9 8 1004 951 260 94 36 chr9 55041821 55042096 -69034076 + B4A SINE B4 1 291 -1 8 1004 868 221 55 5 chr9 55043420 55043620 -69032552 - B3 SINE B2 -6 210 1 8 1004 189 0 0 0 chr9 55043636 55043657 -69032515 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1004 384 269 97 0 chr9 55043906 55044040 -69032132 - MIR SINE MIR -30 232 86 8 1004 613 153 0 35 chr9 55044515 55044630 -69031542 - PB1D9 SINE Alu -1 119 9 9 1004 719 132 9 0 chr9 55044808 55044914 -69031258 - B2_Mm1t SINE B2 -85 108 2 9 1004 30 0 0 0 chr9 55045622 55045652 -69030520 + AT_rich Low_complexity Low_complexity 1 30 0 9 1004 324 264 231 0 chr9 55045754 55045845 -69030327 + PB1D7 SINE Alu 1 112 -8 9 1004 1147 51 0 0 chr9 55045856 55045993 -69030179 + B1_Mm SINE Alu 2 138 -9 9 1004 191 61 0 29 chr9 55045993 55046027 -69030145 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 9 1004 307 288 123 97 chr9 55046067 55046221 -69029951 + RSINE1 SINE B4 8 165 0 9 1004 344 244 117 44 chr9 55046250 55046430 -69029742 + B2_Mm2 SINE B2 2 194 -1 9 1004 21 57 0 0 chr9 55046614 55046649 -69029523 + AT_rich Low_complexity Low_complexity 1 35 0 9 1004 464 248 46 0 chr9 55047059 55047168 -69029004 + B1F SINE Alu 29 142 -7 9 1004 338 156 188 0 chr9 55047674 55047738 -69028434 + ID4_ SINE ID 4 79 -4 1 1004 583 236 12 49 chr9 55047812 55047964 -69028208 + ID_B1 SINE B4 81 224 0 1 1004 1123 57 43 0 chr9 55047991 55048132 -69028040 + B1_Mus2 SINE Alu 1 147 0 1 1004 290 115 19 0 chr9 55049164 55049216 -69026956 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1004 1180 55 0 7 chr9 55049217 55049365 -69026807 - B1_Mus2 SINE Alu 0 147 1 1 1004 318 190 48 34 chr9 55049380 55049514 -69026658 - B2_Mm2 SINE B2 0 193 22 1 1004 1149 126 11 0 chr9 55049534 55049708 -69026464 - B2_Mm1t SINE B2 -17 176 1 1 1004 866 217 58 11 chr9 55049750 55049941 -69026231 - B3 SINE B2 -15 201 2 1 1004 264 30 0 0 chr9 55049947 55049980 -69026192 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1 1004 21 0 0 0 chr9 55049980 55050001 -69026171 + AT_rich Low_complexity Low_complexity 1 21 0 1 1004 1205 61 0 0 chr9 55050001 55050148 -69026024 - B1_Mus1 SINE Alu 0 148 2 1 125 1538 53 0 0 chr9 55050159 55050346 -69025826 - B2_Mm1t SINE B2 -5 188 2 1 1005 243 283 99 66 chr9 55050402 55050523 -69025649 - MLT2D LTR ERVL -19 541 417 1 1005 518 246 53 23 chr9 55052067 55052200 -69023972 - ID_B1 SINE B4 -7 217 81 1 1005 236 311 0 0 chr9 55052200 55052261 -69023911 + MIRc SINE MIR 45 105 -163 1 1005 442 262 8 1 chr9 55052303 55052398 -69023774 - RSINE1 SINE B4 -191 101 1 1 1005 702 248 97 57 chr9 55052647 55052874 -69023298 + B4A SINE B4 42 277 -15 1 1005 232 267 154 45 chr9 55057769 55057879 -69018293 - L1MC4 LINE L1 -162 7880 7759 1 1005 386 234 53 11 chr9 55057922 55058017 -69018155 + MTD LTR MaLR 43 141 -278 1 1005 295 228 145 26 chr9 55058194 55058311 -69017861 - L1MC4 LINE L1 -642 7400 7270 1 1005 392 235 135 53 chr9 55058471 55058678 -69017494 - L1MC4 LINE L1 -1170 6872 6647 1 1005 342 244 142 37 chr9 55058679 55058841 -69017331 - MER2 DNA MER2_type 0 345 167 1 1005 229 189 19 19 chr9 55059029 55059083 -69017089 - L1MC4 LINE L1 -1493 6549 6496 1 1005 475 267 73 39 chr9 55059080 55059314 -69016858 - Lx3C LINE L1 -49 6927 6686 1 1005 381 93 0 0 chr9 55059353 55059407 -69016765 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 1 1005 304 254 55 27 chr9 55059408 55059481 -69016691 - B3A SINE B2 -36 180 106 1 1005 271 155 21 0 chr9 55059494 55059555 -69016617 - B3 SINE B2 -132 63 1 1 1005 358 204 87 10 chr9 55059843 55059947 -69016225 + B3A SINE B2 1 112 -86 1 1005 354 23 0 0 chr9 55059959 55060002 -69016170 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1005 236 273 0 132 chr9 55060311 55060425 -69015747 + MIRb SINE MIR 111 209 -59 1 1005 970 164 68 55 chr9 55062386 55062605 -69013567 - ID_B1 SINE B4 -2 222 1 1 1005 1645 140 93 15 chr9 55064049 55064382 -69011790 + ORR1C2 LTR MaLR 1 359 -25 1 1005 207 0 0 0 chr9 55064543 55064566 -69011606 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1005 291 242 200 0 chr9 55064568 55064663 -69011509 - B4A SINE B4 -11 281 168 1 1005 284 222 10 82 chr9 55064686 55064784 -69011388 - B4A SINE B4 -200 92 2 1 1005 416 298 76 18 chr9 55064891 55065198 -69010974 - L1M5 LINE L1 -573 5667 5340 1 1005 337 237 161 15 chr9 55065463 55065600 -69010572 - MTE2b LTR MaLR -222 157 1 1 1005 509 206 10 0 chr9 55065744 55065841 -69010331 - B3 SINE B2 -19 197 100 1 1005 552 146 0 46 chr9 55066312 55066420 -69009752 - PB1D9 SINE Alu -1 119 17 1 1005 537 230 8 34 chr9 55066613 55066730 -69009442 - B3 SINE B2 -17 199 86 1 1005 439 216 106 56 chr9 55069095 55069237 -69006935 + B1_Mur1 SINE Alu 1 149 0 1 1005 682 257 35 4 chr9 55070325 55070518 -69005654 - B3A SINE B2 -21 195 4 1 1005 1085 59 15 0 chr9 55071838 55071974 -69004198 + B1_Mus2 SINE Alu 2 139 -8 1 1005 478 309 14 14 chr9 55073649 55073790 -69002382 + RSINE1 SINE B4 6 146 -19 1 1005 649 266 193 13 chr9 55074116 55074509 -69001663 + L1MB3 LINE L1 3909 4372 -1771 1 1005 434 246 66 66 chr9 55074544 55074727 -69001445 + L1MB3 LINE L1 4505 4687 -1453 1 1005 330 254 183 31 chr9 55074832 55075317 -69000855 + L1MB3 LINE L1 4853 5423 -760 1 1005 285 299 19 9 chr9 55075423 55075531 -69000641 + L1MB3 LINE L1 6024 6132 -51 1 1005 1441 84 5 10 chr9 55076344 55076537 -68999635 + B2_Mm1a SINE B2 2 193 0 1 1005 209 220 39 20 chr9 55076541 55076592 -68999580 + MIRb SINE MIR 24 75 -193 1 1005 231 114 0 0 chr9 55076690 55076725 -68999447 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1005 1257 34 0 0 chr9 55076728 55076876 -68999296 - B1_Mus1 SINE Alu 0 148 1 1 1005 318 293 16 57 chr9 55077280 55077403 -68998769 + PB1D7 SINE Alu 3 120 0 1 1005 22 0 0 0 chr9 55077493 55077515 -68998657 + AT_rich Low_complexity Low_complexity 1 22 0 1 1005 480 213 197 0 chr9 55077537 55077659 -68998513 - B3A SINE B2 -52 146 1 1 1005 1253 35 0 0 chr9 55077689 55077834 -68998338 + B1_Mus2 SINE Alu 1 145 -2 1 1005 189 94 0 0 chr9 55077839 55077871 -68998301 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1005 690 13 0 0 chr9 55077984 55078063 -68998109 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1005 1612 262 143 34 chr9 55078373 55079195 -68996977 - L1MB3 LINE L1 -9 6174 5259 1 1005 1599 52 0 0 chr9 55080354 55080547 -68995625 - B2_Mm1a SINE B2 0 193 1 1 1005 341 289 62 15 chr9 55080675 55080805 -68995367 - L1M4 LINE L1 -426 5752 5617 1 1005 1523 135 30 69 chr9 55080977 55081312 -68994860 + RLTRETN_Mm LTR ERVK 1 322 0 1 1005 396 286 169 22 chr9 55081312 55081719 -68994453 - L1M4 LINE L1 -767 5379 4913 1 1005 361 327 92 47 chr9 55081756 55082081 -68994091 - L1M4 LINE L1 -1361 4785 4448 1 1005 1572 198 44 19 chr9 55082081 55082446 -68993726 - ORR1D1 LTR MaLR 0 374 1 1 1005 361 327 92 47 chr9 55082446 55082585 -68993587 - L1M4 LINE L1 -1699 4447 4300 1 1005 337 273 150 111 chr9 55082642 55082806 -68993366 - L1M4 LINE L1 -2552 3594 3432 1 1005 803 228 60 28 chr9 55082806 55083023 -68993149 - ID_B1 SINE B4 0 224 1 1 1005 337 273 150 111 chr9 55083023 55083192 -68992980 - L1M4 LINE L1 -2715 3431 3248 1 1005 425 316 36 14 chr9 55083196 55083334 -68992838 - B4A SINE B4 -69 223 83 1 1005 433 343 0 0 chr9 55083360 55083575 -68992597 + (TG)n Simple_repeat Simple_repeat 1 215 0 1 1005 631 179 122 0 chr9 55083935 55084058 -68992114 + B1_Mur4 SINE Alu 3 140 -10 1 1005 216 0 0 0 chr9 55084060 55084084 -68992088 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 1005 3379 68 11 37 chr9 55084684 55085053 -68991119 + LTRIS5 LTR ERV1 1 369 -78 1 1005 612 67 0 0 chr9 55085053 55085143 -68991029 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1005 1029 84 28 7 chr9 55085143 55085287 -68990885 + B1_Mm SINE Alu 1 147 0 1 1005 3379 68 11 37 chr9 55085287 55085375 -68990797 + LTRIS5 LTR ERV1 370 446 -1 1 1005 228 263 26 26 chr9 55085915 55085993 -68990179 - RSINE1 SINE B4 -84 81 4 1 1005 398 216 34 0 chr9 55086024 55086112 -68990060 - B1F SINE Alu -58 91 1 1 1005 299 185 15 44 chr9 55086053 55086121 -68990051 - B4A SINE B4 -147 145 80 1 1005 910 246 88 33 chr9 55086289 55086562 -68989610 + B4 SINE B4 5 292 0 1 1005 255 250 0 0 chr9 55088804 55088860 -68987312 - ID4_ SINE ID -17 66 11 1 1005 455 179 36 45 chr9 55090300 55090411 -68985761 - PB1 SINE Alu -7 120 11 1 1005 549 243 0 0 chr9 55090806 55090917 -68985255 + B1F1 SINE Alu 1 111 -38 1 1005 1144 82 0 0 chr9 55091535 55091681 -68984491 + B1_Mus2 SINE Alu 2 147 0 1 1005 227 39 36 55 chr9 55091681 55091736 -68984436 + (CAAA)n Simple_repeat Simple_repeat 4 57 0 1 1005 1174 141 85 10 chr9 55091768 55091969 -68984203 + B3 SINE B2 1 216 0 1 1005 512 15 0 15 chr9 55092117 55092183 -68983989 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1005 1829 234 146 21 chr9 55092183 55092437 -68983735 + RCHARR1 DNA MER1_type 227 508 -466 1 1005 212 0 36 0 chr9 55092437 55092465 -68983707 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1005 1098 59 0 7 chr9 55092466 55092603 -68983569 - B1_Mus1 SINE Alu -11 137 2 1 1005 1829 234 146 21 chr9 55092603 55093009 -68983163 + RCHARR1 DNA MER1_type 509 972 -2 1 1005 4645 66 3 0 chr9 55093183 55093773 -68982399 + L1_Mus3 LINE L1 6046 6637 -1 1 1005 262 260 0 27 chr9 55094706 55094781 -68981391 + PB1D7 SINE Alu 47 119 -1 1 1005 312 70 0 0 chr9 55095144 55095187 -68980985 + (CCA)n Simple_repeat Simple_repeat 2 44 0 1 1005 719 177 157 22 chr9 55096335 55096520 -68979652 + B3 SINE B2 2 211 -5 1 1005 373 232 0 12 chr9 55096538 55096621 -68979551 + ID_B1 SINE B4 143 224 0 1 1005 180 152 0 0 chr9 55096658 55096691 -68979481 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1005 30 0 0 0 chr9 55096748 55096778 -68979394 + AT_rich Low_complexity Low_complexity 1 30 0 1 1005 225 0 0 0 chr9 55097512 55097537 -68978635 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 1 1005 1826 136 6 242 chr9 55097620 55098115 -68978057 + ORR1C1 LTR MaLR 1 378 0 1 1005 23 68 0 0 chr9 55099637 55099681 -68976491 + AT_rich Low_complexity Low_complexity 1 44 0 1 1005 304 261 0 17 chr9 55099747 55099852 -68976320 + B2_Mm2 SINE B2 4 108 -87 1 1005 1137 56 7 0 chr9 55099852 55099988 -68976184 + B1_Mus1 SINE Alu 2 138 -10 1 1005 188 34 0 33 chr9 55099988 55100018 -68976154 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1005 304 261 0 17 chr9 55100024 55100035 -68976137 + B2_Mm2 SINE B2 109 118 -77 1 1005 422 175 20 11 chr9 55100030 55100123 -68976049 + B2_Mm2 SINE B2 52 156 -42 1 1005 1395 85 21 0 chr9 55100148 55100337 -68975835 + B2_Mm2 SINE B2 1 193 -2 1 1005 838 161 14 14 chr9 55100509 55100646 -68975526 + B1_Mur4 SINE Alu 2 140 -10 1 1005 212 59 29 0 chr9 55100646 55100680 -68975492 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 1 1005 258 304 14 0 chr9 55100958 55101027 -68975145 + ID4_ SINE ID 5 74 -9 1 1005 456 318 27 0 chr9 55101090 55101238 -68974934 + RSINE1 SINE B4 3 154 -11 1 1005 238 259 0 0 chr9 55102637 55102691 -68973481 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1005 309 264 120 30 chr9 55102737 55102870 -68973302 - B4A SINE B4 -93 199 55 1 1005 36 23 0 0 chr9 55103882 55103925 -68972247 + AT_rich Low_complexity Low_complexity 1 43 0 1 1005 797 171 184 22 chr9 55103941 55104126 -68972046 + B3 SINE B2 2 216 0 2 1005 21 0 0 0 chr9 55104130 55104151 -68972021 + AT_rich Low_complexity Low_complexity 1 21 0 2 1005 807 175 137 15 chr9 55104208 55104405 -68971767 - URR1B DNA MER1_type -3 222 2 2 1005 875 308 125 25 chr9 55104417 55104977 -68971195 + L1MA6 LINE L1 5321 5936 -364 2 1005 303 85 0 0 chr9 55105000 55105047 -68971125 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1005 1038 88 7 0 chr9 55105285 55105421 -68970751 + B1_Mus2 SINE Alu 1 137 -10 2 1005 261 0 0 0 chr9 55105421 55105450 -68970722 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1005 425 312 106 0 chr9 55105452 55105593 -68970579 + RSINE1 SINE B4 6 161 -4 2 1005 303 28 0 0 chr9 55105597 55105633 -68970539 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1005 247 297 1 30 chr9 55105818 55105897 -68970275 + PB1D10 SINE Alu 14 90 -59 2 1005 279 79 0 0 chr9 55106951 55106989 -68969183 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1005 224 312 24 24 chr9 55107309 55107391 -68968781 - ID4_ SINE ID 0 83 2 2 1005 387 0 0 0 chr9 55108263 55108306 -68967866 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1005 635 179 32 0 chr9 55108560 55108683 -68967489 - B1_Mur1 SINE Alu -2 147 21 2 1005 22 80 0 0 chr9 55108748 55108798 -68967374 + AT_rich Low_complexity Low_complexity 1 50 0 2 1005 331 318 46 64 chr9 55109381 55109561 -68966611 + MTEb LTR MaLR 2 179 -200 2 1005 780 30 0 0 chr9 55109843 55109942 -68966230 + B1_Mus2 SINE Alu 49 147 0 2 1005 503 216 0 33 chr9 55110515 55110635 -68965537 + B1_Mur1 SINE Alu 9 124 -25 2 1005 207 0 0 0 chr9 55110661 55110684 -68965488 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1005 196 186 0 33 chr9 55110736 55110765 -68965407 + polypurine Low_complexity Low_complexity 4 32 0 2 1005 1254 95 0 0 chr9 55110765 55110944 -68965228 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2 1005 196 186 0 33 chr9 55110944 55110975 -68965197 + polypurine Low_complexity Low_complexity 33 62 0 2 1005 206 135 0 26 chr9 55110984 55111022 -68965150 + (CAGG)n Simple_repeat Simple_repeat 3 39 0 2 1005 543 290 229 0 chr9 55111230 55111509 -68964663 - MER68 LTR ERVL -220 343 1 2 1005 292 324 154 23 chr9 55111530 55111751 -68964421 + L1MC LINE L1 5393 5642 -2240 2 1005 633 241 56 7 chr9 55111881 55112023 -68964149 + RSINE1 SINE B4 1 149 -16 2 1005 620 252 38 19 chr9 55112997 55113155 -68963017 + RSINE1 SINE B4 5 165 0 2 1005 240 143 0 0 chr9 55113157 55113199 -68962973 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1005 306 250 25 17 chr9 55113266 55113384 -68962788 + (TA)n Simple_repeat Simple_repeat 2 120 0 2 1005 942 225 191 0 chr9 55113384 55113646 -68962526 + MTD LTR MaLR 102 413 -6 2 1005 493 230 0 0 chr9 55113762 55113862 -68962310 + B1F SINE Alu 46 145 -4 2 1005 258 240 110 0 chr9 55113979 55114079 -68962093 - MER58B DNA MER1_type -106 235 125 2 1005 5768 59 11 3 chr9 55114334 55115062 -68961110 - L1Md_F2 LINE L1 0 6582 5849 2 1005 307 337 85 6 chr9 55115062 55115238 -68960934 - L1M5 LINE L1 -3571 2575 2386 2 1005 1021 261 69 36 chr9 55115251 55115640 -68960532 + Lx8 LINE L1 7010 7411 -62 2 1005 319 345 0 33 chr9 55115646 55116087 -68960085 + G-rich Low_complexity Low_complexity 1 426 0 2 1005 288 304 3 59 chr9 55116116 55116450 -68959722 + G-rich Low_complexity Low_complexity 1 315 0 2 1005 302 234 138 15 chr9 55117244 55117374 -68958798 - L1MB8 LINE L1 -2 6176 6031 2 1005 418 350 137 55 chr9 55118166 55118532 -68957640 + MamRep605 Unknown Unknown 290 685 -191 2 1005 909 159 28 0 chr9 55118719 55118864 -68957308 - B1_Mur2 SINE Alu 0 149 1 2 1005 752 199 208 5 chr9 55119725 55119927 -68956245 + MTEb LTR MaLR 13 255 -124 2 1005 986 324 51 23 chr9 55119964 55120353 -68955819 + MTD LTR MaLR 6 405 -14 2 1005 397 349 59 59 chr9 55122406 55122726 -68953446 + L1MC LINE L1 5334 5653 -2229 2 1005 306 254 57 33 chr9 55122785 55122907 -68953265 + L1MB3 LINE L1 6059 6183 0 2 1005 28 0 0 0 chr9 55123085 55123113 -68953059 + AT_rich Low_complexity Low_complexity 1 28 0 2 1005 868 167 14 0 chr9 55123114 55123252 -68952920 + B1_Mus1 SINE Alu 2 141 -7 2 1005 243 79 0 0 chr9 55123252 55123290 -68952882 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 2 1005 265 281 131 25 chr9 55123298 55123535 -68952637 + L1M3 LINE L1 4358 4619 -1527 2 1005 295 231 177 52 chr9 55123777 55123873 -68952299 + B4 SINE B4 80 187 -105 2 1005 478 157 12 0 chr9 55123802 55123885 -68952287 + PB1D9 SINE Alu 28 111 -9 2 1005 198 0 0 0 chr9 55123988 55124010 -68952162 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1005 1151 44 0 0 chr9 55124013 55124148 -68952024 - B1_Mus1 SINE Alu -12 136 2 2 1005 287 209 88 0 chr9 55124176 55124267 -68951905 + L1M3 LINE L1 4677 4775 -1371 2 1005 356 284 165 0 chr9 55124268 55124395 -68951777 + RSINE1 SINE B4 3 150 -15 2 1005 914 223 22 66 chr9 55124452 55124635 -68951537 + B3 SINE B2 1 178 -38 2 1005 1946 122 79 0 chr9 55124635 55124939 -68951233 + ORR1A4 LTR MaLR 2 329 0 2 1005 914 223 22 66 chr9 55124939 55124981 -68951191 + B3 SINE B2 179 216 0 2 1005 315 0 0 0 chr9 55124981 55125016 -68951156 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1005 577 244 161 7 chr9 55125027 55125164 -68951008 + L1M3 LINE L1 4783 4941 -1199 2 1005 285 29 0 0 chr9 55125164 55125198 -68950974 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 1005 577 244 161 7 chr9 55125198 55125333 -68950839 + L1M3 LINE L1 4942 5096 -1044 2 1005 446 180 118 52 chr9 55125567 55125702 -68950470 + B1F SINE Alu 1 144 -5 2 1005 623 325 113 33 chr9 55125860 55126407 -68949765 + L1M5 LINE L1 2167 2757 -3389 2 1005 216 293 26 13 chr9 55126414 55126490 -68949682 - PB1D7 SINE Alu -14 106 30 2 1005 22 0 0 0 chr9 55126729 55126751 -68949421 + AT_rich Low_complexity Low_complexity 1 22 0 2 1005 291 157 0 0 chr9 55129179 55129230 -68946942 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1005 252 0 0 0 chr9 55129377 55129405 -68946767 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1005 21 71 0 0 chr9 55130178 55130220 -68945952 + AT_rich Low_complexity Low_complexity 1 42 0 2 1005 27 0 0 0 chr9 55130424 55130451 -68945721 + AT_rich Low_complexity Low_complexity 1 27 0 2 1005 244 104 59 15 chr9 55131159 55131227 -68944945 + GA-rich Low_complexity Low_complexity 2 72 0 2 1005 368 256 47 23 chr9 55131916 55132044 -68944128 - Lx7 LINE L1 -607 7089 6959 2 1005 363 192 0 0 chr9 55132198 55132271 -68943901 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1005 224 211 17 17 chr9 55132337 55132395 -68943777 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1005 368 283 9 86 chr9 55132638 55132662 -68943510 - PB1D10 SINE Alu 0 117 93 2 1005 1593 109 39 4 chr9 55132662 55132919 -68943253 + Lx LINE L1 6388 6653 -1 2 1005 368 283 9 86 chr9 55132919 55133010 -68943162 - PB1D10 SINE Alu -25 92 11 2 1005 413 306 89 95 chr9 55133227 55133585 -68942587 + ORR1E LTR MaLR 4 359 0 2 1005 299 312 35 18 chr9 55134163 55134277 -68941895 + L1ME1 LINE L1 5638 5753 -606 2 1005 559 314 41 0 chr9 55134295 55134489 -68941683 + L1ME1 LINE L1 5730 5931 -248 2 1005 711 233 34 82 chr9 55134701 55134775 -68941397 - B3A SINE B2 -2 196 134 2 1005 962 162 134 15 chr9 55134775 55134976 -68941196 - URR1A DNA MER1_type -1 225 1 2 1005 711 233 34 82 chr9 55134976 55135107 -68941065 - B3A SINE B2 -65 133 1 2 1005 417 295 214 23 chr9 55135579 55135794 -68940378 - MER2 DNA MER2_type -5 340 85 2 1005 729 244 26 83 chr9 55135949 55136141 -68940031 - B3 SINE B2 -35 181 1 2 1005 451 231 101 28 chr9 55137407 55137585 -68938587 + B3A SINE B2 2 192 -3 2 1005 302 287 0 75 chr9 55138014 55138108 -68938064 - B1F SINE Alu -41 109 22 2 1005 669 232 20 7 chr9 55138231 55138383 -68937789 + MLT1A1 LTR MaLR 1 154 -254 2 1005 622 245 106 12 chr9 55138386 55138547 -68937625 + B3A SINE B2 2 177 -21 2 1005 243 333 59 42 chr9 55138904 55139023 -68937149 + MER58B DNA MER1_type 220 340 -1 2 1005 1133 88 0 0 chr9 55139498 55139645 -68936527 - B1_Mus1 SINE Alu 0 148 2 2 1005 1953 125 26 9 chr9 55139741 55140081 -68936091 - ORR1B2 LTR MaLR 0 367 22 2 1005 1234 133 97 29 chr9 55140013 55140291 -68935881 - RMER4A LTR ERVK -169 297 1 2 1005 3598 255 119 29 chr9 55140293 55141749 -68934423 - L1MC LINE L1 -1264 4882 3296 2 1005 522 71 83 0 chr9 55141767 55141851 -68934321 - L1_Mus3 LINE L1 0 6638 6548 2 1005 240 319 205 6 chr9 55141977 55142138 -68934034 - B4A SINE B4 -99 193 1 2 1005 367 224 26 1 chr9 55142168 55142254 -68933918 + L1ME2 LINE L1 2514 2600 -3540 2 1005 897 228 6 0 chr9 55142254 55142416 -68933756 + RSINE1 SINE B4 3 165 0 2 1005 184 30 29 29 chr9 55142424 55142458 -68933714 + (CATA)n Simple_repeat Simple_repeat 2 35 0 2 1005 329 267 80 13 chr9 55142500 55142616 -68933556 + B1F SINE Alu 2 116 -1 2 1005 581 280 73 37 chr9 55142616 55143017 -68933155 + L1ME2 LINE L1 5105 5512 -932 2 1005 4342 106 138 57 chr9 55143204 55144025 -68932147 + RMER17D LTR ERVK 1 887 -2 2 1005 405 260 81 8 chr9 55144228 55144352 -68931820 + MLT1F2 LTR MaLR 425 557 -3 2 1005 636 235 84 42 chr9 55144362 55144646 -68931526 + L1ME2 LINE L1 5617 5912 -252 2 1005 237 182 0 0 chr9 55144646 55144701 -68931471 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 2 1005 189 0 0 0 chr9 55144721 55144742 -68931430 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1005 327 318 26 33 chr9 55144792 55144945 -68931227 - MER5A DNA MER1_type -3 186 35 2 1005 651 283 46 62 chr9 55145039 55145363 -68930809 + L1M2a LINE L1 1 319 -6849 2 1005 255 378 63 0 chr9 55145402 55145513 -68930659 + L1M2a LINE L1 411 528 -6640 2 1005 538 329 154 34 chr9 55146031 55146648 -68929524 + L1M2a LINE L1 1157 1847 -5321 2 1005 282 190 17 0 chr9 55146675 55146733 -68929439 + L1M2 LINE L1 5680 5738 -559 2 1005 601 332 25 36 chr9 55146781 55147056 -68929116 + B4A SINE B4 15 286 -6 2 1005 252 0 0 0 chr9 55147198 55147226 -68928946 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1005 465 19 0 0 chr9 55147226 55147279 -68928893 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1005 279 253 44 0 chr9 55147334 55147425 -68928747 + L1M5 LINE L1 4233 4327 -1819 3 1005 320 326 52 6 chr9 55147720 55147893 -68928279 + L1M5 LINE L1 5083 5263 -883 3 1005 739 212 12 46 chr9 55147903 55148077 -68928095 + B3 SINE B2 1 170 -28 3 1005 780 91 0 0 chr9 55148077 55148187 -68927985 + (TA)n Simple_repeat Simple_repeat 1 110 0 3 1005 675 226 25 55 chr9 55148187 55148213 -68927959 + B3A SINE B2 171 195 -3 3 1005 415 239 107 102 chr9 55148233 55148429 -68927743 - B3A SINE B2 0 198 2 3 1005 470 244 88 82 chr9 55148465 55148936 -68927236 + L1M5 LINE L1 5304 5826 -414 3 1005 3094 210 107 33 chr9 55148941 55149659 -68926513 + Lx9 LINE L1 6760 7483 -161 3 1005 378 115 0 0 chr9 55149659 55149720 -68926452 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1005 3094 210 107 33 chr9 55149720 55149824 -68926348 + Lx9 LINE L1 7484 7642 -2 3 1005 367 282 9 18 chr9 55150162 55150274 -68925898 + PB1D7 SINE Alu 1 111 -9 3 1005 884 200 194 0 chr9 55151125 55151305 -68924867 + B3 SINE B2 2 216 0 3 1005 215 267 83 0 chr9 55151725 55151810 -68924362 - MIR SINE MIR -89 179 80 3 1005 225 327 31 98 chr9 55151912 55151941 -68924231 - MER67A LTR ERV1 -15 528 500 3 1005 1386 71 38 5 chr9 55151941 55152125 -68924047 + B2_Mm2 SINE B2 1 190 -5 3 1005 225 327 31 98 chr9 55152125 55152258 -68923914 - MER67A LTR ERV1 -44 499 377 3 1005 292 305 16 48 chr9 55152306 55152430 -68923742 - MER67A LTR ERV1 -251 292 173 3 1005 2207 88 6 0 chr9 55152420 55152737 -68923435 - ORR1A2 LTR MaLR -8 319 1 3 1005 467 227 60 65 chr9 55152741 55152925 -68923247 - MER67A LTR ERV1 -360 183 1 3 1005 203 130 43 0 chr9 55152944 55152990 -68923182 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1005 251 191 16 0 chr9 55154523 55154586 -68921586 + G-rich Low_complexity Low_complexity 6 69 0 3 1005 261 274 119 0 chr9 55154726 55154810 -68921362 - PB1D7 SINE Alu -21 99 6 3 1005 746 239 40 15 chr9 55155367 55155567 -68920605 - B3 SINE B2 -8 208 4 3 1005 2028 171 75 5 chr9 55156478 55156867 -68919305 - MTD LTR MaLR -1 418 3 3 1005 2074 119 0 3 chr9 55156878 55157198 -68918974 - ORR1A2 LTR MaLR -8 319 1 3 1005 391 234 0 50 chr9 55157975 55158074 -68918098 + MER83B-int LTR ERV1 880 973 -3907 3 1005 239 208 0 36 chr9 55158412 55158467 -68917705 + CT-rich Low_complexity Low_complexity 1 53 0 3 1005 302 371 25 10 chr9 55160483 55160679 -68915493 + MER52-int LTR ERV1 3605 3803 -3288 3 1005 979 269 83 81 chr9 55160746 55161031 -68915141 + L1MA4A LINE L1 5521 5823 -480 3 1005 811 148 29 22 chr9 55161031 55161169 -68915003 + B1_Mur4 SINE Alu 1 139 -11 3 1005 351 0 0 0 chr9 55161169 55161208 -68914964 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1005 979 269 83 81 chr9 55161208 55161426 -68914746 + L1MA4A LINE L1 5824 6025 -278 3 1005 259 281 84 12 chr9 55161754 55161837 -68914335 - RSINE1 SINE B4 -3 162 74 3 1005 227 293 0 0 chr9 55164000 55164058 -68912114 + MER46C DNA MER2_type 264 321 -17 3 1005 24 0 0 0 chr9 55164058 55164082 -68912090 + AT_rich Low_complexity Low_complexity 1 24 0 3 1005 1060 231 173 0 chr9 55164956 55165263 -68910909 + ORR1D2 LTR MaLR 11 370 0 3 1005 1748 117 109 16 chr9 55165475 55165787 -68910385 + ORR1B1 LTR MaLR 1 341 -53 3 1005 1054 140 22 0 chr9 55165785 55165963 -68910209 + ORR1B1 LTR MaLR 213 394 0 3 1005 276 289 13 0 chr9 55165965 55166041 -68910131 - PB1D10 SINE Alu -32 85 9 3 1005 726 218 0 14 chr9 55166087 55166231 -68909941 + B1F SINE Alu 2 143 -6 3 1005 823 205 24 61 chr9 55167714 55167927 -68908245 + B3 SINE B2 10 214 -2 3 1005 486 313 105 54 chr9 55168143 55168420 -68907752 - B4A SINE B4 0 292 2 3 1005 393 285 117 29 chr9 55169090 55169296 -68906876 + MIR SINE MIR 28 251 -11 3 1005 1954 153 113 3 chr9 55169313 55169692 -68906480 - MTC LTR MaLR 0 421 1 3 1005 418 289 68 30 chr9 55170888 55171020 -68905152 - ID_B1 SINE B4 -5 219 83 3 1005 353 149 0 15 chr9 55171594 55171662 -68904510 + CT-rich Low_complexity Low_complexity 4 70 0 3 1005 398 295 38 0 chr9 55171664 55171769 -68904403 - PB1D10 SINE Alu 0 117 9 3 1005 244 293 13 0 chr9 55172570 55172645 -68903527 + ID4_ SINE ID 5 80 -3 3 1005 511 212 100 70 chr9 55172958 55173137 -68903035 - MTD LTR MaLR -145 274 70 3 1005 189 0 0 0 chr9 55173159 55173180 -68902992 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1005 432 0 0 0 chr9 55173180 55173227 -68902945 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1005 199 0 31 31 chr9 55173228 55173260 -68902912 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 3 1005 333 282 6 49 chr9 55174581 55174764 -68901408 + G-rich Low_complexity Low_complexity 6 180 0 3 1005 307 327 131 0 chr9 55175988 55176156 -68900016 - MIRb SINE MIR -38 230 41 3 1005 273 57 0 0 chr9 55176694 55176729 -68899443 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1005 304 208 71 30 chr9 55178795 55178894 -68897278 + L2a LINE L2 3029 3131 -295 3 1005 198 71 0 0 chr9 55180924 55180952 -68895220 + (CCTG)n Simple_repeat Simple_repeat 3 30 0 3 1006 495 300 7 167 chr9 55181631 55181748 -68894424 + B4A SINE B4 10 94 -198 3 1006 261 0 0 0 chr9 55181748 55181777 -68894395 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3 1006 495 300 7 167 chr9 55181777 55181935 -68894237 + B4A SINE B4 95 241 -51 3 1006 267 54 0 0 chr9 55181960 55181997 -68894175 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1006 547 186 39 19 chr9 55182101 55182205 -68893967 + Lx7 LINE L1 7215 7320 -376 3 1006 236 154 0 37 chr9 55182234 55182288 -68893884 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 3 1006 180 0 0 0 chr9 55182312 55182332 -68893840 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 3 1006 23 54 0 0 chr9 55182424 55182461 -68893711 + AT_rich Low_complexity Low_complexity 1 37 0 3 1006 1241 78 33 22 chr9 55182487 55182671 -68893501 + B2_Mm2 SINE B2 3 188 -7 3 1006 436 354 19 24 chr9 55182745 55182956 -68893216 - MER20 DNA MER1_type -2 217 8 3 1006 249 235 0 0 chr9 55183789 55183840 -68892332 - 5S rRNA rRNA -70 51 1 3 1006 256 313 0 0 chr9 55183843 55183910 -68892262 - 4.5SRNA scRNA scRNA -7 87 21 3 1006 936 210 71 15 chr9 55184346 55184544 -68891628 - B3 SINE B2 -7 209 1 3 1006 1187 75 7 0 chr9 55184572 55184719 -68891453 + B1_Mus1 SINE Alu 1 148 0 3 1006 357 226 0 0 chr9 55184752 55184836 -68891336 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 1006 27 29 0 0 chr9 55184904 55184938 -68891234 + AT_rich Low_complexity Low_complexity 1 34 0 3 1006 3046 264 118 28 chr9 55184938 55185987 -68890185 - Lx8 LINE L1 -2 7471 6328 3 1006 374 335 14 21 chr9 55186086 55186228 -68889944 + MIR3 SINE MIR 19 156 -52 3 1006 572 190 0 193 chr9 55186592 55186768 -68889404 + B1_Mus1 SINE Alu 1 142 -6 3 1006 315 0 0 0 chr9 55186769 55186804 -68889368 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 3 1006 1151 256 52 35 chr9 55187010 55187297 -68888875 - B4A SINE B4 0 292 1 3 1006 987 248 19 0 chr9 55187313 55187527 -68888645 - ID_B1 SINE B4 -5 219 2 3 1006 662 262 71 34 chr9 55187527 55187795 -68888377 - B4A SINE B4 -12 280 3 3 1006 463 234 138 0 chr9 55187934 55188079 -68888093 - L1MB3 LINE L1 -2 6181 6017 3 1006 1473 303 74 18 chr9 55188238 55189071 -68887101 - L2 LINE L2 -467 2952 2073 3 1006 655 303 20 6 chr9 55189593 55189816 -68886356 - Lx9 LINE L1 -176 7468 7116 3 1006 403 286 109 73 chr9 55189817 55190119 -68886053 + ORR1E LTR MaLR 1 313 -46 3 1006 781 324 28 25 chr9 55190317 55190602 -68885570 + B4 SINE B4 1 286 -6 3 1006 232 301 156 15 chr9 55190961 55191096 -68885076 + RSINE1 SINE B4 2 155 -10 3 1006 237 83 0 0 chr9 55191102 55191138 -68885034 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1006 357 287 118 79 chr9 55191291 55191389 -68884783 + MLT1C LTR MaLR 92 195 -310 3 1006 696 173 88 53 chr9 55191389 55191560 -68884612 + B2_Mm2 SINE B2 1 177 -18 3 1006 458 275 87 37 chr9 55191560 55191795 -68884377 + MLT1C LTR MaLR 196 423 -44 3 1006 696 78 0 42 chr9 55191857 55191977 -68884195 - L1Md_F2 LINE L1 0 6582 6468 3 1006 253 269 0 15 chr9 55192779 55192847 -68883325 - MLT1B LTR MaLR -52 338 272 3 1006 1106 274 43 61 chr9 55193703 55193784 -68882388 + Tigger7 DNA MER2_type 24 99 -2392 3 1006 1469 45 17 0 chr9 55193784 55193960 -68882212 - B2_Mm2 SINE B2 -16 179 1 3 1006 1106 275 52 63 chr9 55193960 55194379 -68881793 + Tigger7 DNA MER2_type 99 529 -21 3 1006 1505 62 5 0 chr9 55195113 55195305 -68880867 + B2_Mm1a SINE B2 1 193 0 3 1006 21 57 0 0 chr9 55195417 55195452 -68880720 + AT_rich Low_complexity Low_complexity 1 35 0 3 1006 382 231 0 0 chr9 55195891 55195969 -68880203 - ID4 SINE ID -4 79 2 3 1006 321 217 0 0 chr9 55196352 55196421 -68879751 + PB1D10 SINE Alu 29 97 -20 3 1006 746 299 99 44 chr9 55196690 55197193 -68878979 + L1ME2 LINE L1 5522 6052 -112 3 1006 225 232 0 0 chr9 55197209 55197278 -68878894 + CT-rich Low_complexity Low_complexity 1 69 0 3 1006 195 42 0 0 chr9 55197282 55197306 -68878866 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 3 1006 362 317 116 67 chr9 55197349 55197616 -68878556 - B4A SINE B4 -11 281 2 3 1006 306 0 0 0 chr9 55198760 55198794 -68877378 + (ATATG)n Simple_repeat Simple_repeat 2 35 0 3 1006 311 188 31 0 chr9 55198839 55198903 -68877269 + B4A SINE B4 3 68 -224 3 1006 364 278 122 0 chr9 55198926 55199041 -68877131 + RSINE1 SINE B4 9 137 -28 3 1006 668 297 25 10 chr9 55199049 55199246 -68876926 + B4A SINE B4 93 292 0 3 1006 396 40 0 0 chr9 55199932 55199982 -68876190 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1006 1239 41 0 0 chr9 55200709 55200856 -68875316 + B1_Mus1 SINE Alu 1 147 -1 3 1006 252 111 0 0 chr9 55200857 55200902 -68875270 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3 1006 459 309 6 24 chr9 55200993 55201159 -68875013 + B4A SINE B4 5 167 -125 3 1006 224 226 0 19 chr9 55201267 55201321 -68874851 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1006 516 234 0 9 chr9 55202039 55202151 -68874021 + PB1D9 SINE Alu 3 113 -7 4 1006 955 196 53 0 chr9 55202269 55202478 -68873694 + URR1B DNA MER1_type 1 220 -5 4 1006 223 283 31 52 chr9 55202782 55202879 -68873293 - MIR3 SINE MIR -15 193 99 4 1006 378 0 0 0 chr9 55202971 55203013 -68873159 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1006 1005 248 149 37 chr9 55203508 55203960 -68872212 - MTEa-int LTR MaLR -884 696 139 4 1006 1024 150 166 0 chr9 55203960 55204153 -68872019 - URR1B DNA MER1_type 0 225 1 4 1006 1005 272 99 46 chr9 55204153 55204268 -68871904 - MTEa-int LTR MaLR -1442 138 5 4 1006 365 303 7 50 chr9 55204278 55204417 -68871755 - MTEa LTR MaLR -7 372 240 4 1006 3710 187 62 62 chr9 55204421 55205423 -68870749 + ORR1D-int LTR MaLR 94 1095 -275 4 1006 466 346 63 0 chr9 55205413 55205572 -68870600 - MER58A DNA MER1_type -45 179 11 4 1006 1328 212 205 6 chr9 55206130 55206477 -68869695 + MT2A LTR ERVL 16 431 -102 4 1006 276 30 0 0 chr9 55206481 55206514 -68869658 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1006 346 85 34 0 chr9 55206514 55206572 -68869600 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1006 259 136 0 0 chr9 55206572 55206616 -68869556 + MT2A LTR ERVL 490 533 0 4 1006 736 194 136 14 chr9 55206695 55206915 -68869257 - L1MA8 LINE L1 -1 6290 6044 4 1006 272 260 21 0 chr9 55207031 55207127 -68869045 - MER33 DNA MER1_type 0 324 227 4 1006 371 227 239 15 chr9 55207130 55207264 -68868908 + RSINE1 SINE B4 2 165 0 4 1006 367 298 88 33 chr9 55207297 55207512 -68868660 - MER33 DNA MER1_type -78 246 20 4 1006 886 215 35 40 chr9 55207743 55207942 -68868230 + B3 SINE B2 9 206 -10 4 1006 293 260 364 0 chr9 55208020 55208152 -68868020 + B4 SINE B4 100 279 -13 4 1006 297 68 0 0 chr9 55208181 55208225 -68867947 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1006 361 285 15 37 chr9 55209082 55209217 -68866955 - MER5A1 DNA MER1_type -33 133 2 4 1006 1757 213 4 80 chr9 55209708 55210158 -68866014 + MTC LTR MaLR 6 421 0 4 1006 879 188 5 28 chr9 55210648 55210852 -68865320 + B3A SINE B2 7 212 -4 4 1006 874 151 12 6 chr9 55210872 55211039 -68865133 + GA-rich Low_complexity Low_complexity 4 171 0 4 1006 302 49 24 0 chr9 55211039 55211080 -68865092 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1006 1530 274 220 37 chr9 55211080 55211885 -68864287 + L1MC2 LINE L1 5296 6209 -135 4 1006 2347 93 9 6 chr9 55211933 55212259 -68863913 + ORR1A2 LTR MaLR 1 327 0 4 1006 25 65 0 0 chr9 55212278 55212324 -68863848 + AT_rich Low_complexity Low_complexity 1 46 0 4 1006 239 275 38 0 chr9 55212876 55212956 -68863216 + Kanga11a DNA Tc2 888 970 0 4 1006 1421 83 0 30 chr9 55213784 55213983 -68862189 + B2_Mm2 SINE B2 2 194 -1 4 1006 21 57 0 0 chr9 55214952 55214987 -68861185 + AT_rich Low_complexity Low_complexity 1 35 0 4 1006 210 105 0 0 chr9 55216251 55216289 -68859883 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1006 1166 239 56 51 chr9 55216725 55216998 -68859174 + L1MA9 LINE L1 4443 4727 -1413 4 1006 1233 41 0 13 chr9 55216998 55217147 -68859025 - B1_Mus1 SINE Alu 0 148 2 4 1006 1166 239 56 51 chr9 55217147 55217265 -68858907 + L1MA9 LINE L1 4728 4836 -1304 4 1006 777 244 39 52 chr9 55217267 55217498 -68858674 + B4A SINE B4 2 229 -63 4 1006 681 191 44 0 chr9 55217498 55217634 -68858538 + B1_Mus2 SINE Alu 1 142 -5 4 1006 772 234 91 25 chr9 55217688 55217799 -68858373 + B3 SINE B2 4 130 -86 4 1006 196 53 26 26 chr9 55217809 55217848 -68858324 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1006 1115 82 0 13 chr9 55217848 55217986 -68858186 - B1_Mus2 SINE Alu -9 138 1 4 1006 772 234 91 25 chr9 55217986 55218071 -68858101 + B3 SINE B2 131 213 -3 4 1006 408 271 167 14 chr9 55218249 55218459 -68857713 + L1MA9 LINE L1 5505 5746 -545 4 1006 898 249 5 20 chr9 55218811 55219008 -68857164 + B3 SINE B2 1 194 -22 4 1006 586 91 20 0 chr9 55219008 55219107 -68857065 + (TA)n Simple_repeat Simple_repeat 1 101 0 4 1006 1170 261 60 47 chr9 55219138 55219624 -68856548 + L1MA9 LINE L1 5748 6239 -73 4 1006 294 327 0 18 chr9 55219629 55219738 -68856434 - PB1 SINE Alu -2 125 19 4 1006 382 269 98 82 chr9 55221149 55221465 -68854707 + L1MC5 LINE L1 7097 7417 -544 4 1006 1289 20 0 0 chr9 55221511 55221658 -68854514 - B1_Mm SINE Alu 0 147 1 4 1006 1582 192 101 3 chr9 55221773 55222139 -68854033 - MTD LTR MaLR -15 404 3 4 1006 25 75 0 0 chr9 55222273 55222326 -68853846 + AT_rich Low_complexity Low_complexity 1 53 0 4 1006 309 320 38 53 chr9 55222411 55222543 -68853629 - L1M2 LINE L1 -2796 3347 3218 4 1006 248 284 22 7 chr9 55222633 55222768 -68853404 + G-rich Low_complexity Low_complexity 42 178 0 4 1006 487 84 4 96 chr9 55222742 55222993 -68853179 + GA-rich Low_complexity Low_complexity 1 228 0 4 1006 1611 325 109 20 chr9 55222993 55223193 -68852979 + Lx9 LINE L1 5956 6173 -1300 4 1006 378 0 0 0 chr9 55223193 55223235 -68852937 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1006 261 0 0 0 chr9 55223235 55223263 -68852909 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1006 2017 296 83 22 chr9 55223263 55224070 -68852102 + Lx9 LINE L1 6174 7187 -457 4 1006 351 0 0 0 chr9 55224071 55224110 -68852062 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1006 1112 153 108 23 chr9 55224162 55224376 -68851796 + ORR1D1 LTR MaLR 1 232 -142 4 1006 328 313 30 10 chr9 55226068 55226168 -68850004 - MLT1H2 LTR MaLR -308 181 80 4 1006 618 101 0 0 chr9 55226182 55226291 -68849881 + (TC)n Simple_repeat Simple_repeat 2 110 0 4 1006 342 0 0 0 chr9 55226291 55226329 -68849843 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1006 567 314 141 30 chr9 55229802 55230065 -68846107 + B4A SINE B4 1 292 0 4 1006 459 0 0 0 chr9 55230103 55230154 -68846018 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 4 1006 309 273 91 0 chr9 55231339 55231460 -68844712 - L1MB3 LINE L1 -310 5873 5742 4 1006 348 282 107 7 chr9 55231465 55231615 -68844557 - L1MB3 LINE L1 -587 5593 5429 4 1006 259 256 0 143 chr9 55231766 55231857 -68844315 - MTEb LTR MaLR -290 89 12 4 1006 776 282 117 29 chr9 55232376 55232719 -68843453 + MTEa LTR MaLR 3 375 -4 4 1006 339 25 0 0 chr9 55232881 55232921 -68843251 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1006 290 282 13 13 chr9 55234227 55234306 -68841866 - MLT1L LTR MaLR -326 284 206 4 1006 531 294 26 40 chr9 55234434 55234586 -68841586 + RSINE1 SINE B4 16 165 0 4 1006 229 280 0 0 chr9 55234586 55234636 -68841536 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1006 1026 39 0 0 chr9 55235405 55235535 -68840637 - MTB LTR MaLR -4 396 267 4 1006 851 137 7 14 chr9 55236822 55236963 -68839209 - B1_Mur2 SINE Alu -1 148 9 4 1006 572 268 39 44 chr9 55236826 55237006 -68839166 - ID_B1 SINE B4 -3 221 43 4 1006 1801 176 65 0 chr9 55237279 55237666 -68838506 - RCHARR1 DNA MER1_type -51 923 512 4 1006 463 180 11 0 chr9 55237651 55237740 -68838432 - PB1D9 SINE Alu -1 119 30 4 1006 733 315 11 30 chr9 55237781 55237813 -68838359 - RCHARR1 DNA MER1_type -476 498 468 4 1006 1289 74 23 0 chr9 55237813 55237989 -68838183 + B2_Mm2 SINE B2 2 181 -14 4 1006 733 315 11 30 chr9 55237989 55238224 -68837948 - RCHARR1 DNA MER1_type -507 467 236 4 1006 275 214 42 28 chr9 55238303 55238375 -68837797 - ID4 SINE ID -9 74 2 4 1006 677 267 151 27 chr9 55238413 55238671 -68837501 - B4A SINE B4 -2 290 1 4 1006 787 216 91 224 chr9 55238837 55239045 -68837127 - MTD LTR MaLR 0 419 202 4 1006 192 40 0 0 chr9 55239045 55239070 -68837102 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 1006 787 216 91 224 chr9 55239070 55239344 -68836828 - MTD LTR MaLR -218 201 1 4 1006 372 22 0 0 chr9 55241831 55241876 -68834296 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1006 299 364 93 0 chr9 55243413 55243564 -68832608 + MER53 DNA hAT 1 165 -28 4 1006 257 85 64 0 chr9 55244353 55244400 -68831772 + (CACCAT)n Simple_repeat Simple_repeat 5 54 0 4 1006 185 325 89 57 chr9 55244415 55244539 -68831633 - MIRc SINE MIR -42 226 99 4 1006 307 214 0 54 chr9 55245363 55245437 -68830735 + ID4_ SINE ID 10 79 -4 4 1006 192 260 35 94 chr9 55247198 55247283 -68828889 + L3 LINE CR1 2033 2112 -2377 4 1006 329 319 47 0 chr9 55249462 55249763 -68826409 + (CATG)n Simple_repeat Simple_repeat 1 315 0 4 1006 879 254 10 5 chr9 55250968 55251174 -68824998 + ID_B1 SINE B4 9 215 -9 4 1006 998 107 5 33 chr9 55251174 55251358 -68824814 + (CATA)n Simple_repeat Simple_repeat 2 180 0 4 1006 834 311 50 12 chr9 55252712 55253050 -68823122 - L1MB5 LINE L1 -48 6126 5776 4 1006 399 202 75 0 chr9 55253125 55253219 -68822953 - RSINE1 SINE B4 -62 103 3 4 1006 242 358 11 0 chr9 55253564 55253659 -68822513 + MIR3 SINE MIR 64 159 -49 4 1006 919 50 151 0 chr9 55254777 55254916 -68821256 - B2_Mm2 SINE B2 -35 160 1 4 1006 407 155 0 12 chr9 55254944 55255029 -68821143 + (CCCCAG)n Simple_repeat Simple_repeat 5 88 0 4 1006 653 273 104 108 chr9 55255524 55255811 -68820361 - B4 SINE B4 0 292 7 4 1006 852 151 7 21 chr9 55257604 55257746 -68818426 - B1_Mur4 SINE Alu -9 141 2 4 1006 432 205 170 88 chr9 55257758 55257940 -68818232 - B3A SINE B2 0 198 2 4 1006 247 176 0 0 chr9 55257996 55258064 -68818108 - MT2A LTR ERVL 0 533 466 4 1006 693 179 0 0 chr9 55258097 55258259 -68817913 + (CA)n Simple_repeat Simple_repeat 1 162 0 4 1006 1383 152 11 34 chr9 55258267 55258533 -68817639 - MT2A LTR ERVL -256 277 18 4 1006 521 189 125 29 chr9 55260020 55260156 -68816016 - B1_Mur2 SINE Alu 0 149 1 4 1006 328 313 100 24 chr9 55261025 55261195 -68814977 - MLT1J LTR MaLR -246 266 84 4 1006 249 33 0 0 chr9 55263173 55263203 -68812969 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1006 726 152 7 104 chr9 55263203 55263357 -68812815 - B1_Mur2 SINE Alu -10 139 1 4 1006 479 17 17 0 chr9 55264072 55264132 -68812040 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 1006 394 175 47 27 chr9 55264132 55264391 -68811781 + (CA)n Simple_repeat Simple_repeat 1 264 0 4 1006 299 278 49 57 chr9 55265154 55265276 -68810896 - MLT1J LTR MaLR -160 352 232 4 1006 332 175 31 10 chr9 55265315 55265413 -68810759 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 5 1006 180 264 126 0 chr9 55266630 55266717 -68809455 - L2 LINE L2 -617 2802 2705 5 1006 419 228 105 0 chr9 55267880 55267994 -68808178 + B1F SINE Alu 3 128 -21 5 1006 259 274 0 16 chr9 55268328 55268391 -68807781 - PB1D10 SINE Alu -2 115 54 5 1006 278 240 248 0 chr9 55268515 55268636 -68807536 - L1MC3 LINE L1 -18 7767 7617 5 1006 321 308 201 20 chr9 55268647 55268945 -68807227 - L1MC4a LINE L1 -223 7659 7308 5 1006 369 75 0 0 chr9 55269128 55269181 -68806991 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1006 264 39 36 55 chr9 55269483 55269538 -68806634 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 5 1006 202 278 19 0 chr9 55270283 55270337 -68805835 - MIRc SINE MIR -94 174 120 5 1006 721 283 141 33 chr9 55270496 55270737 -68805435 + B4A SINE B4 26 292 0 5 1006 327 308 191 31 chr9 55270769 55271029 -68805143 - MLT1J2 LTR MaLR -30 418 117 5 1006 246 156 0 0 chr9 55272426 55272471 -68803701 + CT-rich Low_complexity Low_complexity 3 47 0 5 1006 180 0 0 0 chr9 55272714 55272734 -68803438 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 5 1006 270 270 66 22 chr9 55272813 55272904 -68803268 - B1F1 SINE Alu -54 95 1 5 1006 468 243 0 9 chr9 55273885 55273993 -68802179 + PB1D9 SINE Alu 1 107 -13 5 1006 180 298 159 82 chr9 55274113 55274358 -68801814 + L2 LINE L2 2658 2921 -498 5 1006 259 275 235 6 chr9 55276570 55276749 -68799423 + ID_B1 SINE B4 5 224 0 5 1006 193 196 35 18 chr9 55277494 55277551 -68798621 - MIR SINE MIR -68 140 83 5 1006 195 114 0 0 chr9 55278579 55278614 -68797558 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 5 1006 526 282 103 61 chr9 55278619 55278880 -68797292 - MTEa LTR MaLR -87 292 21 5 1006 867 241 234 19 chr9 55279577 55279945 -68796227 - MLT1C LTR MaLR -8 459 13 5 1006 994 162 0 6 chr9 55281202 55281370 -68794802 - RLTR17 LTR ERVK -323 369 203 5 1006 201 310 0 0 chr9 55282305 55282363 -68793809 - MIR SINE MIR -63 145 88 5 1006 290 266 9 35 chr9 55282811 55282924 -68793248 - MIRb SINE MIR -19 249 140 5 1006 224 30 0 29 chr9 55284137 55284171 -68792001 + (TAA)n Simple_repeat Simple_repeat 1 33 0 5 1006 785 144 14 21 chr9 55284686 55284828 -68791344 + B1_Mur4 SINE Alu 10 150 0 5 1006 483 18 0 0 chr9 55284845 55284901 -68791271 + (TATG)n Simple_repeat Simple_repeat 4 59 0 5 1006 401 220 63 18 chr9 55287980 55288091 -68788081 - RLTR42-int LTR ERVK -4173 1349 1234 5 1006 1858 145 104 16 chr9 55288095 55288383 -68787789 - MTC LTR MaLR -8 413 100 5 1006 1809 85 31 0 chr9 55288383 55288642 -68787530 - L1Md_F2 LINE L1 -1 6581 6315 5 1006 1858 145 104 16 chr9 55288642 55288718 -68787454 - MTC LTR MaLR -322 99 18 5 1006 240 35 0 0 chr9 55289405 55289434 -68786738 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 5 1006 7177 19 2 43 chr9 55289570 55289857 -68786315 + RLTR13B2 LTR ERVK 1 287 -535 5 1006 1698 16 0 0 chr9 55289857 55290044 -68786128 + B2_Mm1t SINE B2 1 187 -6 5 1006 7177 19 2 43 chr9 55290044 55290613 -68785559 + RLTR13B2 LTR ERVK 288 822 0 5 1006 249 33 0 0 chr9 55294920 55294950 -68781222 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1006 1149 65 0 0 chr9 55294950 55295089 -68781083 - B1_Mus1 SINE Alu -9 139 1 5 1006 684 65 0 0 chr9 55296509 55296601 -68779571 - BC1_Mm scRNA scRNA -59 93 2 5 1006 220 260 27 27 chr9 55296605 55296680 -68779492 + MIRb SINE MIR 179 253 -15 5 1006 412 250 129 0 chr9 55296801 55296925 -68779247 + B1F SINE Alu 1 140 -9 5 1006 32 75 0 0 chr9 55296925 55296992 -68779180 + AT_rich Low_complexity Low_complexity 1 67 0 5 1006 315 0 0 0 chr9 55298406 55298441 -68777731 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1006 580 332 122 8 chr9 55298465 55298720 -68777452 - B4A SINE B4 -7 285 2 5 1006 493 282 229 41 chr9 55299790 55300034 -68776138 - B4A SINE B4 0 292 3 5 1006 367 215 63 0 chr9 55300263 55300342 -68775830 + MIR SINE MIR 30 113 -149 5 1006 276 30 0 0 chr9 55300622 55300655 -68775517 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1006 222 208 0 0 chr9 55302058 55302106 -68774066 + (ATGGTG)n Simple_repeat Simple_repeat 4 51 0 5 1006 456 300 54 0 chr9 55302112 55302242 -68773930 - B1_Mur2 SINE Alu -12 137 1 5 1006 227 273 0 49 chr9 55302957 55303038 -68773134 + CT-rich Low_complexity Low_complexity 3 79 0 5 1006 930 229 82 103 chr9 55304474 55304763 -68771409 + L1M4 LINE L1 4887 5199 -947 5 1006 623 217 65 7 chr9 55304763 55304902 -68771270 + B1_Mur1 SINE Alu 1 147 -2 5 1006 930 229 82 103 chr9 55304902 55305049 -68771123 + L1M4 LINE L1 5200 5314 -832 5 1006 314 260 0 63 chr9 55305060 55305162 -68771010 + ID4 SINE ID 9 104 -48 5 1006 902 266 55 19 chr9 55305172 55305497 -68770675 + L1M4 LINE L1 5362 5698 -482 5 1006 186 150 0 0 chr9 55305551 55305591 -68770581 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1006 3394 67 20 5 chr9 55305667 55306114 -68770058 + Lx LINE L1 5698 6151 -503 5 1006 341 74 0 0 chr9 55306114 55306168 -68770004 + Lx LINE L1 6597 6650 -4 5 1006 690 261 115 7 chr9 55306340 55306610 -68769562 + L1MB5 LINE L1 5280 5578 -596 5 1006 369 303 159 6 chr9 55306651 55307055 -68769117 + L1MB5 LINE L1 5651 6125 -53 5 1006 418 281 63 76 chr9 55307076 55307234 -68768938 - RSINE1 SINE B4 -7 158 3 5 1006 333 228 0 71 chr9 55307247 55307270 -68768902 + L1MB7 LINE L1 6093 6111 -73 5 1006 481 252 176 25 chr9 55307270 55307429 -68768743 - B3A SINE B2 -14 184 2 5 1006 333 228 0 71 chr9 55307429 55307504 -68768668 + L1MB7 LINE L1 6112 6184 0 5 1006 239 302 0 0 chr9 55307849 55307902 -68768270 + ID4 SINE ID 2 54 -29 5 1006 3143 32 3 0 chr9 55308636 55309005 -68767167 + L1Md_F3 LINE L1 6212 6581 -3 5 1006 22 0 0 0 chr9 55309298 55309320 -68766852 + AT_rich Low_complexity Low_complexity 1 22 0 5 1006 406 326 70 0 chr9 55310410 55310582 -68765590 + Helitron3Na_Mam RC Helitron 279 462 -24 5 1006 305 274 26 70 chr9 55311105 55311219 -68764953 - B1F1 SINE Alu -5 112 4 5 1006 1026 134 207 5 chr9 55311978 55312166 -68764006 - URR1A DNA MER1_type 0 226 1 5 1006 254 289 24 0 chr9 55312299 55312382 -68763790 - MIR3 SINE MIR -10 198 114 5 1007 817 234 28 51 chr9 55312717 55312933 -68763239 - ID_B1 SINE B4 -11 213 3 5 1007 297 0 0 0 chr9 55314205 55314238 -68761934 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1007 1232 55 0 0 chr9 55314238 55314384 -68761788 - B1_Mm SINE Alu 0 147 2 5 1007 21 0 0 0 chr9 55314573 55314594 -68761578 + AT_rich Low_complexity Low_complexity 1 21 0 5 1007 200 200 18 0 chr9 55315669 55315724 -68760448 + GA-rich Low_complexity Low_complexity 4 59 0 5 1007 281 253 12 35 chr9 55316079 55316165 -68760007 + MIR SINE MIR 98 181 -81 5 1007 531 306 14 20 chr9 55316289 55316436 -68759736 + MER91B DNA Tip100 2 147 -43 5 1007 582 309 61 20 chr9 55316567 55316765 -68759407 - B4A SINE B4 -10 282 77 5 1007 3419 224 169 19 chr9 55316848 55317777 -68758395 - Lx8 LINE L1 -125 7348 6281 5 1007 324 259 12 0 chr9 55317781 55317862 -68758310 - B4 SINE B4 -207 85 4 5 1007 261 259 84 25 chr9 55318442 55318561 -68757611 - MER33 DNA MER1_type 0 324 199 5 1007 222 37 0 0 chr9 55319114 55319141 -68757031 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1007 205 88 0 29 chr9 55319477 55319512 -68756660 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 1007 528 16 0 0 chr9 55319514 55319575 -68756597 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1007 1434 75 5 11 chr9 55320301 55320491 -68755681 + B2_Mm1a SINE B2 5 193 0 5 1007 251 230 81 0 chr9 55320588 55320662 -68755510 + B1_Mur1 SINE Alu 70 149 0 5 1007 180 77 0 0 chr9 55320722 55320748 -68755424 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1007 251 321 52 97 chr9 55320751 55320906 -68755266 - B1F2 SINE Alu -1 148 1 5 1007 459 0 0 0 chr9 55320912 55320963 -68755209 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1007 629 281 137 8 chr9 55322425 55322673 -68753499 + B4A SINE B4 1 280 -12 5 1007 423 0 0 0 chr9 55322710 55322757 -68753415 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1007 405 288 141 0 chr9 55322882 55323052 -68753120 - MIR SINE MIR -54 208 15 5 1007 212 244 0 0 chr9 55323053 55323098 -68753074 + CT-rich Low_complexity Low_complexity 2 46 0 5 1007 289 278 200 0 chr9 55323110 55323225 -68752947 - ID_B1 SINE B4 0 224 87 5 1007 1087 290 75 3 chr9 55323997 55324384 -68751788 + MTD LTR MaLR 5 419 0 5 1007 457 352 63 0 chr9 55324953 55325206 -68750966 + L4 LINE RTE 1568 1836 -193 5 1007 903 188 10 72 chr9 55325555 55325762 -68750410 + B2_Mm2 SINE B2 1 194 -1 5 1007 205 197 32 16 chr9 55325829 55325891 -68750281 + A-rich Low_complexity Low_complexity 5 67 0 5 1007 505 300 78 50 chr9 55326136 55326455 -68749717 + L3 LINE CR1 3684 4011 -478 5 1007 411 269 56 37 chr9 55326470 55326632 -68749540 + L1MEg LINE L1 178 342 -5900 5 1007 246 339 85 0 chr9 55326702 55326832 -68749340 + L1MEg LINE L1 323 463 -5673 5 1007 257 247 68 0 chr9 55326825 55326898 -68749274 + L1MEg LINE L1 3940 4017 -2129 5 1007 286 297 155 33 chr9 55327106 55327287 -68748885 + L1MC4 LINE L1 7619 7821 -221 5 1007 954 26 0 0 chr9 55327399 55327512 -68748660 + (TG)n Simple_repeat Simple_repeat 1 113 0 5 1007 1161 209 112 0 chr9 55327571 55327867 -68748305 + MTEb LTR MaLR 51 379 0 5 1007 304 303 74 19 chr9 55328434 55328649 -68747523 + L1M5 LINE L1 5093 5319 -827 5 1007 1133 63 6 6 chr9 55328789 55328949 -68747223 - B2_Mm1a SINE B2 -33 160 1 5 1007 1147 44 0 0 chr9 55329018 55329155 -68747017 - B1_Mus2 SINE Alu -10 137 1 5 1007 365 241 24 0 chr9 55329378 55329461 -68746711 + B1F SINE Alu 2 86 -63 5 1007 217 328 15 0 chr9 55329729 55329796 -68746376 + ID4 SINE ID 6 73 -10 5 1007 722 206 35 7 chr9 55330409 55330551 -68745621 - B1_Mur2 SINE Alu -1 148 3 6 1007 23 0 0 0 chr9 55330636 55330659 -68745513 + AT_rich Low_complexity Low_complexity 1 23 0 6 1007 369 207 128 8 chr9 55330740 55330857 -68745315 - L1MCa LINE L1 -3024 3297 3167 6 1007 296 247 85 11 chr9 55330866 55330960 -68745212 + PB1D10 SINE Alu 10 110 -7 6 1007 313 246 0 40 chr9 55331003 55331079 -68745093 + ID4_ SINE ID 1 73 -10 6 1007 781 258 209 16 chr9 55331084 55331458 -68744714 - L1MCa LINE L1 -3138 3183 2738 6 1007 418 268 169 68 chr9 55331460 55332021 -68744151 - L1MCa LINE L1 -4893 1615 998 6 1007 292 257 61 44 chr9 55332284 55332398 -68743774 + L1MA4 LINE L1 5855 5970 -330 6 1007 3510 35 0 0 chr9 55332531 55332927 -68743245 + MTA_Mm LTR MaLR 1 396 0 6 1007 1216 61 0 0 chr9 55333927 55334074 -68742098 + B1_Mus2 SINE Alu 1 147 0 6 1007 283 248 0 10 chr9 55334347 55334429 -68741743 + ID4 SINE ID 3 81 -2 6 1007 856 217 173 52 chr9 55336010 55336374 -68739798 + Lx9 LINE L1 7222 7629 -15 6 1007 1432 71 16 11 chr9 55337528 55337713 -68738459 - B2_Mm2 SINE B2 -8 187 2 6 1007 1159 272 129 15 chr9 55338341 55338907 -68737265 - Lx7 LINE L1 -1672 5972 5345 6 1007 410 66 0 0 chr9 55339991 55340052 -68736120 + B1_Mus1 SINE Alu 1 61 -87 6 1007 773 292 35 22 chr9 55340291 55340522 -68735650 - B4A SINE B4 -57 235 2 6 1007 280 347 0 10 chr9 55340538 55340634 -68735538 - PB1D10 SINE Alu -8 109 15 6 1007 419 143 0 0 chr9 55340629 55340692 -68735480 + B3 SINE B2 30 92 -124 6 1007 2023 196 3 24 chr9 55340693 55341075 -68735097 - ORR1D1 LTR MaLR 0 374 1 6 1007 1672 278 26 11 chr9 55341455 55341914 -68734258 + MuRRS4-int LTR ERV1 3555 4020 -1043 6 1007 1527 198 184 60 chr9 55342294 55342798 -68733374 + RMER2 LTR ERV1 1 567 0 6 1007 429 206 109 0 chr9 55342952 55343044 -68733128 + B1_Mus1 SINE Alu 18 119 -29 6 1007 240 184 0 0 chr9 55343061 55343110 -68733062 + GA-rich Low_complexity Low_complexity 1 49 0 6 1007 25 31 0 0 chr9 55343188 55343220 -68732952 + AT_rich Low_complexity Low_complexity 1 32 0 6 1007 1144 82 7 0 chr9 55343779 55343925 -68732247 + B1_Mus2 SINE Alu 1 147 0 6 1007 198 0 0 0 chr9 55343926 55343948 -68732224 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1007 510 227 16 151 chr9 55343955 55344147 -68732025 + ORR1D1 LTR MaLR 17 182 -192 6 1007 596 161 84 8 chr9 55344144 55344275 -68731897 - MTC LTR MaLR -278 143 3 6 1007 21 0 0 0 chr9 55344287 55344308 -68731864 + AT_rich Low_complexity Low_complexity 1 21 0 6 1007 424 326 23 0 chr9 55344369 55344498 -68731674 - B1F1 SINE Alu -17 132 1 6 1007 31 44 0 0 chr9 55344498 55344543 -68731629 + AT_rich Low_complexity Low_complexity 1 45 0 6 1007 526 339 48 0 chr9 55344561 55344729 -68731443 - B3A SINE B2 -21 177 2 6 1007 585 40 0 0 chr9 55344829 55344903 -68731269 + B1_Mus2 SINE Alu 65 138 -9 6 1007 423 0 0 0 chr9 55344903 55344950 -68731222 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1007 870 238 43 10 chr9 55344956 55345164 -68731008 + B3 SINE B2 2 216 0 6 1007 1446 50 33 6 chr9 55345169 55345351 -68730821 - B2_Mm2 SINE B2 -8 187 1 6 1007 216 86 0 0 chr9 55345634 55345669 -68730503 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 1007 237 259 17 0 chr9 55345669 55345727 -68730445 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 6 1007 877 132 27 27 chr9 55346696 55346844 -68729328 + B1_Mus1 SINE Alu 1 148 0 6 1007 1158 61 0 0 chr9 55347151 55347298 -68728874 - B1_Mus2 SINE Alu 0 147 1 6 1007 2001 130 109 6 chr9 55348159 55348516 -68727656 + MTC LTR MaLR 11 404 -17 6 1007 745 193 14 0 chr9 55348581 55348721 -68727451 - B1_Mus1 SINE Alu -6 142 1 6 1007 918 33 8 0 chr9 55348743 55348864 -68727308 - B1_Mus2 SINE Alu 0 147 26 6 1007 10174 130 36 59 chr9 55348864 55349908 -68726264 + Lx LINE L1 3873 4933 -1721 6 1007 1041 72 0 0 chr9 55349908 55350047 -68726125 - B1_Mm SINE Alu 0 147 9 6 1007 10174 130 36 59 chr9 55350047 55351739 -68724433 + Lx LINE L1 4934 6654 0 6 1007 530 234 48 0 chr9 55351754 55351878 -68724294 + RSINE1 SINE B4 25 154 -11 6 1007 1402 221 65 24 chr9 55352435 55352774 -68723398 - RMER1C Other Other -367 975 623 6 1007 594 221 50 35 chr9 55352775 55352916 -68723256 + B1_Mur3 SINE Alu 2 144 -5 6 1007 1220 246 4 11 chr9 55353281 55353548 -68722624 - RMER1C Other Other -1056 286 22 6 1007 604 238 183 0 chr9 55354184 55354348 -68721824 - B3 SINE B2 -17 199 6 6 1007 600 329 25 25 chr9 55354374 55354536 -68721636 - RSINE1 SINE B4 0 165 4 6 1007 296 306 27 18 chr9 55354563 55354673 -68721499 + PB1D10 SINE Alu 7 117 0 6 1007 956 250 59 93 chr9 55355098 55355432 -68720740 - MTEa LTR MaLR -17 362 42 6 1007 712 226 14 0 chr9 55355432 55355578 -68720594 - B1F2 SINE Alu -1 148 1 6 1007 956 250 59 93 chr9 55355578 55355618 -68720554 - MTEa LTR MaLR -338 41 1 6 1007 22 35 0 0 chr9 55356805 55356834 -68719338 + AT_rich Low_complexity Low_complexity 1 29 0 6 1007 228 0 0 0 chr9 55356856 55356888 -68719284 + B1_Mm SINE Alu 116 147 0 6 1007 314 296 31 0 chr9 55357008 55357106 -68719066 + PB1D9 SINE Alu 20 120 0 6 1007 195 42 0 0 chr9 55357235 55357259 -68718913 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1007 282 260 13 25 chr9 55357323 55357402 -68718770 + B4A SINE B4 4 81 -211 6 1007 186 43 0 0 chr9 55357402 55357425 -68718747 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1007 217 242 0 29 chr9 55357504 55357572 -68718600 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1007 980 251 76 42 chr9 55357649 55358056 -68718116 + L1MC4 LINE L1 7222 7642 -400 6 1007 180 0 0 0 chr9 55358224 55358244 -68717928 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1007 1226 35 0 0 chr9 55358406 55358548 -68717624 - B1_Mus2 SINE Alu -5 142 1 6 1007 192 77 0 0 chr9 55359937 55359963 -68716209 + (CCG)n Simple_repeat Simple_repeat 2 27 0 6 1007 180 0 0 0 chr9 55360412 55360432 -68715740 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1007 30 0 0 0 chr9 55360434 55360464 -68715708 + AT_rich Low_complexity Low_complexity 1 30 0 6 1007 336 340 101 34 chr9 55361000 55361207 -68714965 + LTR88b LTR Gypsy? 258 478 -359 6 1007 513 124 0 0 chr9 55362255 55362352 -68713820 + (GAGAA)n Simple_repeat Simple_repeat 3 99 0 6 1007 180 91 22 43 chr9 55362342 55362388 -68713784 + GA-rich Low_complexity Low_complexity 2 46 0 6 1007 439 169 0 13 chr9 55362503 55362581 -68713591 - B1_Mus2 SINE Alu -13 134 58 6 1007 457 350 57 55 chr9 55362909 55363402 -68712770 - HERV16-int LTR ERVL -1910 3757 3264 6 1007 1095 360 48 43 chr9 55363632 55364230 -68711942 - HERV16-int LTR ERVL -1922 3074 2474 6 1007 233 301 192 0 chr9 55364864 55365010 -68711162 + Cheshire DNA MER1_type 474 647 -1773 6 1007 806 231 25 51 chr9 55365020 55365216 -68710956 + B3A SINE B2 6 196 -2 6 1007 3759 222 124 33 chr9 55365252 55366216 -68709956 - RMER1B Other Other -11 1055 4 6 1007 31 0 0 24 chr9 55367716 55367731 -68708441 + AT_rich Low_complexity Low_complexity 1 15 0 6 1007 1218 47 0 13 chr9 55367731 55367881 -68708291 + B1_Mus1 SINE Alu 1 148 0 6 1007 31 0 0 24 chr9 55367881 55367907 -68708265 + AT_rich Low_complexity Low_complexity 1 26 0 6 1007 216 0 0 0 chr9 55367925 55367949 -68708223 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 1007 11304 106 23 11 chr9 55367952 55368980 -68707192 + L1_Mus3 LINE L1 4190 5235 -648 6 1007 4477 14 2 0 chr9 55368980 55369472 -68706700 + MT2_Mm LTR ERVL 1 493 0 6 1007 11304 80 39 3 chr9 55369472 55370827 -68705345 + L1_Mus3 LINE L1 5236 6638 0 6 1007 580 271 63 31 chr9 55370811 55371066 -68705106 + L1M3 LINE L1 3861 4123 -2017 6 1007 564 266 157 26 chr9 55371075 55371221 -68704951 + L1M3 LINE L1 4245 4396 -1744 6 1007 1230 48 0 0 chr9 55371221 55371367 -68704805 + B1_Mus2 SINE Alu 1 146 -1 6 1007 564 266 157 26 chr9 55371367 55371609 -68704563 + L1M3 LINE L1 4397 4684 -1456 6 1007 1540 285 52 73 chr9 55371595 55371737 -68704435 + Lx9 LINE L1 4800 4952 -1194 6 1007 1371 90 16 0 chr9 55371737 55371926 -68704246 + B2_Mm1t SINE B2 1 192 -1 6 1007 1540 284 51 93 chr9 55371926 55372539 -68703633 + Lx9 LINE L1 4908 5480 -367 6 1007 1433 72 58 5 chr9 55372539 55372747 -68703425 + L1_Mus2 LINE L1 6346 6564 -2 6 1007 1540 290 54 78 chr9 55372747 55373199 -68702973 + Lx9 LINE L1 5481 5972 -1501 6 1007 535 228 88 6 chr9 55373222 55373381 -68702791 + L1MB8 LINE L1 5704 5875 -303 6 1007 895 241 13 19 chr9 55373381 55373599 -68702573 + MTD LTR MaLR 1 207 -212 6 1007 924 163 82 0 chr9 55373599 55373783 -68702389 + B3 SINE B2 1 199 -17 6 1007 277 290 92 21 chr9 55373783 55373803 -68702369 + MTD LTR MaLR 197 215 -164 6 1007 499 285 123 0 chr9 55374965 55375193 -68700979 - MLT1F1 LTR MaLR -7 562 307 6 1007 1537 242 18 16 chr9 55375480 55375853 -68700319 - MTE2a LTR MaLR -15 404 35 6 1007 1121 133 20 0 chr9 55375867 55376062 -68700110 + URR1B DNA MER1_type 27 225 0 6 1007 221 171 24 0 chr9 55376496 55376537 -68699635 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1007 1978 271 80 38 chr9 55376603 55377256 -68698916 + Lx9 LINE L1 6447 7126 -518 6 1007 469 165 0 0 chr9 55377304 55377383 -68698789 + B1_Mus1 SINE Alu 5 83 -65 6 1007 335 245 83 28 chr9 55377404 55377513 -68698659 - PB1D10 SINE Alu -1 116 2 6 1007 198 0 0 0 chr9 55377513 55377535 -68698637 + (TAG)n Simple_repeat Simple_repeat 1 22 0 6 1007 729 233 7 7 chr9 55377546 55377693 -68698479 - B1_Mur1 SINE Alu -2 147 1 6 1007 244 317 0 24 chr9 55377864 55377948 -68698224 + ID4 SINE ID 2 83 0 6 1007 842 214 69 74 chr9 55378069 55378286 -68697886 - B3 SINE B2 0 216 1 6 1007 1430 216 85 33 chr9 55378359 55378757 -68697415 - MTD LTR MaLR 0 419 1 6 1007 273 197 0 0 chr9 55378772 55378838 -68697334 + CT-rich Low_complexity Low_complexity 3 68 0 6 1007 240 59 0 0 chr9 55379394 55379428 -68696744 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 6 1007 659 248 179 25 chr9 55379521 55379841 -68696331 - MTD LTR MaLR -15 404 35 6 1007 775 163 0 0 chr9 55380033 55380156 -68696016 - B1_Mus2 SINE Alu -15 132 10 7 1007 454 337 74 49 chr9 55380165 55380368 -68695804 + MLT1E1 LTR MaLR 428 635 -19 7 1007 236 354 12 12 chr9 55381713 55381793 -68694379 + ID4 SINE ID 4 83 0 7 1007 280 290 61 61 chr9 55381934 55382066 -68694106 + MLT1L LTR MaLR 148 279 -331 7 1007 189 0 0 0 chr9 55382827 55382848 -68693324 + (CGAG)n Simple_repeat Simple_repeat 2 22 0 7 1007 806 268 10 16 chr9 55383404 55383597 -68692575 + B3A SINE B2 2 193 -5 7 1007 446 269 221 0 chr9 55384435 55384580 -68691592 + MER45A DNA Tip100 2 178 0 7 1007 233 196 17 35 chr9 55384806 55384864 -68691308 + MER110 LTR ERV1 213 269 -222 7 1007 189 0 0 0 chr9 55385474 55385495 -68690677 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1007 228 106 14 43 chr9 55386130 55386199 -68689973 + A-rich Low_complexity Low_complexity 2 68 0 7 1007 186 226 32 16 chr9 55387300 55387363 -68688809 - MIRm SINE MIR -125 151 88 7 1007 25 0 0 0 chr9 55388537 55388562 -68687610 + AT_rich Low_complexity Low_complexity 1 25 0 7 1007 25 51 0 0 chr9 55390415 55390454 -68685718 + GC_rich Low_complexity Low_complexity 1 39 0 7 1007 180 267 67 0 chr9 55391029 55391104 -68685068 + MIR3 SINE MIR 82 161 -47 7 1007 22 0 0 0 chr9 55395493 55395515 -68680657 + AT_rich Low_complexity Low_complexity 1 22 0 7 1007 636 14 0 0 chr9 55396392 55396465 -68679707 + (GA)n Simple_repeat Simple_repeat 1 73 0 7 1007 355 264 11 0 chr9 55399409 55399496 -68676676 - PB1D9 SINE Alu -5 115 28 7 1007 339 130 0 0 chr9 55399505 55399559 -68676613 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1007 589 212 45 0 chr9 55399561 55399693 -68676479 - B3A SINE B2 -59 139 2 7 1007 243 0 0 0 chr9 55400358 55400385 -68675787 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1007 506 248 62 0 chr9 55400491 55400604 -68675568 - ID_B1 SINE B4 -23 201 82 7 1007 374 235 0 45 chr9 55401637 55401726 -68674446 - PB1D10 SINE Alu -31 86 2 7 1007 239 214 0 114 chr9 55401659 55401738 -68674434 - B4A SINE B4 -143 149 80 7 1007 241 80 0 123 chr9 55401765 55401822 -68674350 + B1_Mur4 SINE Alu 101 150 0 7 1007 22 56 0 0 chr9 55401997 55402033 -68674139 + AT_rich Low_complexity Low_complexity 1 36 0 7 1007 462 18 0 0 chr9 55402195 55402250 -68673922 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1007 253 284 73 12 chr9 55402274 55402356 -68673816 - PB1D7 SINE Alu -1 119 33 7 1007 213 333 40 0 chr9 55402534 55402609 -68673563 + L2a LINE L2 3320 3397 -29 7 1007 22 0 0 0 chr9 55403378 55403400 -68672772 + AT_rich Low_complexity Low_complexity 1 22 0 7 1007 602 66 176 0 chr9 55403428 55403519 -68672653 - U6 snRNA snRNA 0 107 1 7 1007 210 0 23 91 chr9 55404275 55404319 -68671853 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1007 24 0 0 0 chr9 55405408 55405432 -68670740 + AT_rich Low_complexity Low_complexity 1 24 0 7 1007 500 327 6 85 chr9 55406758 55406922 -68669250 + RSINE1 SINE B4 2 152 -13 7 1007 718 204 66 0 chr9 55407041 55407178 -68668994 + B1_Mur3 SINE Alu 2 147 -2 7 1007 405 316 8 29 chr9 55408246 55408414 -68667758 - MLT1B LTR MaLR -1 389 209 7 1007 567 139 26 0 chr9 55409115 55409230 -68666942 + CT-rich Low_complexity Low_complexity 2 119 0 7 1007 413 271 0 0 chr9 55409387 55409472 -68666700 + PB1D10 SINE Alu 1 85 -32 7 1007 269 151 0 19 chr9 55410134 55410188 -68665984 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 7 1007 680 195 231 0 chr9 55410210 55410379 -68665793 - B3 SINE B2 -2 214 7 7 1007 4870 73 5 32 chr9 55410941 55411593 -68664579 + L1_Mus2 LINE L1 5933 6566 0 7 1007 279 173 0 0 chr9 55411684 55411736 -68664436 + GA-rich Low_complexity Low_complexity 3 54 0 7 1007 492 18 0 0 chr9 55412804 55412861 -68663311 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 1007 1040 65 7 35 chr9 55412861 55413004 -68663168 - B1_Mm SINE Alu -7 140 2 7 1007 195 42 0 0 chr9 55413239 55413263 -68662909 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1007 268 300 61 15 chr9 55414782 55414914 -68661258 + L2a LINE L2 3282 3419 -7 7 1007 21 36 0 0 chr9 55416077 55416105 -68660067 + AT_rich Low_complexity Low_complexity 1 28 0 7 1007 238 308 77 54 chr9 55416784 55417008 -68659164 - MIR SINE MIR -23 245 22 7 1007 1332 62 56 6 chr9 55417029 55417207 -68658965 - B2_Mm2 SINE B2 -7 188 2 7 1007 279 0 0 0 chr9 55417366 55417397 -68658775 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1007 267 307 56 91 chr9 55417398 55417595 -68658577 + MTEb LTR MaLR 77 266 -113 7 1007 682 259 123 38 chr9 55417785 55418078 -68658094 + MTE-int LTR MaLR 3 320 -1260 7 1007 1136 82 0 0 chr9 55418101 55418248 -68657924 - B1_Mus2 SINE Alu 0 147 1 7 1007 333 0 0 0 chr9 55418271 55418308 -68657864 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 7 1007 299 300 0 24 chr9 55418976 55419058 -68657114 + ID4 SINE ID 4 83 0 7 1007 489 252 118 0 chr9 55419093 55419212 -68656960 + RSINE1 SINE B4 4 136 -29 7 1007 26 0 0 0 chr9 55419214 55419240 -68656932 + AT_rich Low_complexity Low_complexity 1 26 0 7 1007 596 239 0 8 chr9 55419398 55419516 -68656656 + PB1D9 SINE Alu 2 118 -2 7 1007 570 165 29 0 chr9 55419523 55419626 -68656546 + PB1D9 SINE Alu 9 114 -6 7 1007 216 0 0 0 chr9 55419702 55419726 -68656446 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1007 216 191 0 0 chr9 55419728 55419775 -68656397 + A-rich Low_complexity Low_complexity 1 47 0 7 1007 1142 71 0 0 chr9 55419897 55420037 -68656135 - B1_Mm SINE Alu -7 140 1 7 1007 377 318 70 104 chr9 55420088 55420234 -68655938 + RCHARR1 DNA MER1_type 3 130 -844 7 1007 4896 36 3 10 chr9 55420234 55420826 -68655346 + L1Md_F2 LINE L1 5994 6581 -1 7 1007 377 318 70 104 chr9 55420826 55420949 -68655223 + RCHARR1 DNA MER1_type 131 263 -711 7 1007 1418 200 58 45 chr9 55422227 55422609 -68653563 + RCHARR1 DNA MER1_type 214 600 -374 7 1007 832 191 154 12 chr9 55422621 55422880 -68653292 - Lx9 LINE L1 -1 7643 7348 7 1007 1492 186 25 93 chr9 55422880 55423108 -68653064 + RCHARR1 DNA MER1_type 587 789 -185 7 1007 1025 120 7 0 chr9 55423108 55423250 -68652922 - B1_Mus1 SINE Alu -5 143 1 7 1007 1492 186 25 93 chr9 55423250 55423429 -68652743 + RCHARR1 DNA MER1_type 790 966 -8 7 1007 284 227 45 0 chr9 55424869 55424957 -68651215 - L1MB3 LINE L1 0 6183 6092 7 1007 390 211 0 0 chr9 55424957 55425071 -68651101 + (CA)n Simple_repeat Simple_repeat 1 114 0 7 1007 234 91 0 0 chr9 55426813 55426846 -68649326 + (TA)n Simple_repeat Simple_repeat 2 34 0 7 1007 345 24 0 0 chr9 55426855 55426897 -68649275 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 7 1007 232 245 94 21 chr9 55426899 55426995 -68649177 - Tigger15a DNA TcMar -79 636 534 7 1007 260 350 68 18 chr9 55427114 55427277 -68648895 - Tigger15a DNA TcMar -376 339 169 7 1007 627 51 0 0 chr9 55428277 55428356 -68647816 + (TTCC)n Simple_repeat Simple_repeat 1 79 0 7 1007 34 55 0 0 chr9 55428484 55428539 -68647633 + AT_rich Low_complexity Low_complexity 1 55 0 7 1007 286 226 0 25 chr9 55428617 55428735 -68647437 - Lx7 LINE L1 -272 7424 7310 7 1007 269 346 0 13 chr9 55429061 55429140 -68647032 - ID4_ SINE ID -3 80 3 7 1007 180 0 0 0 chr9 55431130 55431150 -68645022 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 1007 341 231 55 0 chr9 55431165 55431256 -68644916 - ID_B1 SINE B4 -6 218 123 7 1007 26 30 0 0 chr9 55431300 55431333 -68644839 + AT_rich Low_complexity Low_complexity 1 33 0 7 1007 726 297 10 24 chr9 55431340 55431547 -68644625 - B3 SINE B2 -8 208 5 7 1007 716 342 41 111 chr9 55431608 55432095 -68644077 + MLT1G LTR MaLR 135 587 -4 7 1007 23 0 0 0 chr9 55432930 55432953 -68643219 + AT_rich Low_complexity Low_complexity 1 23 0 7 1007 268 235 167 0 chr9 55433069 55433171 -68643001 + MIR SINE MIR 87 205 -57 7 1007 930 199 77 16 chr9 55433302 55433496 -68642676 + B3 SINE B2 5 210 -6 7 1007 564 326 69 31 chr9 55433517 55433717 -68642455 + B4A SINE B4 1 206 -86 7 1007 463 203 110 0 chr9 55433717 55433835 -68642337 + B1_Mur2 SINE Alu 1 131 -18 7 1007 564 326 69 31 chr9 55433835 55433909 -68642263 + B4A SINE B4 207 284 -8 7 1007 390 129 0 0 chr9 55433916 55433978 -68642194 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1007 183 42 0 0 chr9 55435903 55435927 -68640245 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1007 1083 82 0 0 chr9 55435927 55436061 -68640111 - B1_Mus1 SINE Alu -10 138 5 7 1007 258 32 0 0 chr9 55437190 55437221 -68638951 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 7 1007 247 227 144 30 chr9 55437515 55437647 -68638525 + Lx8 LINE L1 7327 7473 0 7 1007 252 0 0 0 chr9 55437900 55437928 -68638244 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1007 216 0 0 0 chr9 55438006 55438030 -68638142 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1007 539 301 35 25 chr9 55438612 55438810 -68637362 - MLT1D LTR MaLR -2 503 304 7 1007 1991 76 4 19 chr9 55439009 55439262 -68636910 - L1_Mus3 LINE L1 -129 6437 6185 7 1007 636 122 15 54 chr9 55439262 55439436 -68636736 + L1_Mus3 LINE L1 6501 6638 0 7 1007 1991 76 4 19 chr9 55439436 55439447 -68636725 - L1_Mus2 LINE L1 -382 6184 6175 7 1007 320 327 86 6 chr9 55440133 55440296 -68635876 + MLT1G3 LTR MaLR 418 593 -2 7 1007 1143 54 0 20 chr9 55440525 55440675 -68635497 + B1_Mus1 SINE Alu 2 148 0 7 1007 3289 33 13 0 chr9 55440933 55441324 -68634848 - MTA_Mm LTR MaLR 0 396 1 7 1007 242 214 18 18 chr9 55441660 55441717 -68634455 - MIRb SINE MIR -1 267 211 7 1007 318 304 62 21 chr9 55441725 55441902 -68634270 + L2a LINE L2 3220 3426 0 7 1007 240 248 205 25 chr9 55442161 55442322 -68633850 - B3A SINE B2 -7 191 2 7 125 7499 99 27 5 chr9 55442378 55443838 -68632334 - Lx2 LINE L1 0 7000 5358 7 1008 346 260 0 74 chr9 55443838 55443868 -68632304 - RMER17B LTR ERVK -373 516 495 8 1008 645 14 0 0 chr9 55443868 55443942 -68632230 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 8 1008 763 100 56 1 chr9 55443942 55444084 -68632088 - RMER17B LTR ERVK -395 494 312 8 1008 528 126 0 0 chr9 55444085 55444180 -68631992 - L1_Mur2 LINE L1 -515 5362 5268 8 1008 5952 72 29 5 chr9 55444190 55445579 -68630593 - L1VL4 LINE L1 -1742 1817 396 8 1008 1188 50 0 0 chr9 55445726 55445866 -68630306 + B1_Mus1 SINE Alu 1 140 -8 8 1008 183 42 0 0 chr9 55445866 55445890 -68630282 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1008 22 0 0 0 chr9 55446126 55446148 -68630024 + AT_rich Low_complexity Low_complexity 1 22 0 8 1008 304 274 132 0 chr9 55447805 55447911 -68628261 - LTR16C LTR ERVL -187 302 183 8 1008 623 197 90 8 chr9 55448051 55448184 -68627988 + B1_Mur1 SINE Alu 2 145 -4 8 1008 241 283 135 45 chr9 55448254 55448365 -68627807 + L2c LINE L2 3241 3361 -26 8 1008 1658 132 73 104 chr9 55448679 55449102 -68627070 + RMER17C LTR ERVK 1 410 0 8 1008 319 324 90 51 chr9 55449931 55450087 -68626085 - RSINE1 SINE B4 0 165 4 8 1008 387 0 0 0 chr9 55451097 55451140 -68625032 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1008 259 243 133 39 chr9 55451388 55451568 -68624604 + L1MC4 LINE L1 7470 7666 -376 8 1008 1950 294 110 23 chr9 55451603 55452393 -68623779 + Lx8 LINE L1 6402 7260 -213 8 1008 2753 137 77 6 chr9 55452393 55452885 -68623287 + RLTR11A2 LTR ERVK 1 527 0 8 1008 1950 294 110 23 chr9 55452885 55452967 -68623205 + Lx8 LINE L1 7261 7350 -123 8 1008 477 271 0 8 chr9 55453088 55453211 -68622961 + LTR40a LTR ERVL 398 519 0 8 1008 344 303 88 65 chr9 55453250 55453557 -68622615 - L1M5 LINE L1 -2328 3818 3505 8 1008 550 267 67 16 chr9 55453589 55453844 -68622328 + L1MEf LINE L1 1183 1450 -4750 8 1008 615 258 144 20 chr9 55454350 55454552 -68621620 - B4 SINE B4 -63 229 3 8 1008 324 265 20 30 chr9 55454658 55454759 -68621413 + LTR33B LTR ERVL 404 503 0 8 1008 239 368 13 6 chr9 55454858 55455014 -68621158 + L1M5 LINE L1 5502 5658 -582 8 1008 854 81 153 0 chr9 55455251 55455375 -68620797 + B1_Mus1 SINE Alu 1 143 -5 8 1008 1131 91 85 0 chr9 55456245 55456421 -68619751 + B2_Mm2 SINE B2 1 191 -4 8 1008 375 306 27 88 chr9 55457160 55457307 -68618865 + MIRb SINE MIR 16 153 -115 8 1008 30 0 0 0 chr9 55457600 55457630 -68618542 + AT_rich Low_complexity Low_complexity 1 30 0 8 1008 330 368 111 21 chr9 55458021 55458210 -68617962 + MIRb SINE MIR 29 234 -34 8 1008 1200 61 0 0 chr9 55458234 55458381 -68617791 - B1_Mus2 SINE Alu 0 147 1 8 1008 180 0 0 0 chr9 55458472 55458492 -68617680 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1008 1088 44 66 0 chr9 55458516 55458653 -68617519 - B1_Mm SINE Alu 0 147 2 8 1008 7066 91 94 16 chr9 55458678 55460043 -68616129 + Lx LINE L1 5118 6654 0 8 1008 531 260 6 123 chr9 55460109 55460280 -68615892 - B4A SINE B4 -141 151 1 8 1008 1537 190 113 90 chr9 55460614 55461178 -68614994 + RMER1B Other Other 45 522 -544 8 1008 505 178 0 0 chr9 55461176 55461266 -68614906 + RMER1B Other Other 841 930 -136 8 1008 2440 88 118 3 chr9 55461435 55461800 -68614372 - MTB_Mm LTR MaLR 0 407 1 8 1008 222 118 0 0 chr9 55461980 55462014 -68614158 + (TC)n Simple_repeat Simple_repeat 1 34 0 8 1008 2492 211 104 26 chr9 55462232 55462879 -68613293 - RMER1B Other Other -11 1055 359 8 1008 3794 107 50 3 chr9 55462970 55463591 -68612581 + Lx3C LINE L1 5889 6538 -438 8 1008 2597 120 42 9 chr9 55464261 55464689 -68611483 + Lx3C LINE L1 6533 6974 -2 8 1008 432 0 0 0 chr9 55464834 55464882 -68611290 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1008 1220 186 25 0 chr9 55464883 55465120 -68611052 - Lx5 LINE L1 -313 6737 6495 8 1008 867 191 152 5 chr9 55465117 55465327 -68610845 + Lx5 LINE L1 6810 7050 0 8 1008 332 312 49 87 chr9 55465902 55466082 -68610090 - MIRb SINE MIR -38 170 11 8 1008 216 0 0 0 chr9 55466327 55466351 -68609821 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1008 510 17 0 0 chr9 55466560 55466619 -68609553 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 8 1008 1536 227 78 25 chr9 55466725 55467123 -68609049 + MTD LTR MaLR 1 419 0 8 1008 366 80 0 0 chr9 55468228 55468278 -68607894 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1008 402 302 94 8 chr9 55468283 55468410 -68607762 - RSINE1 SINE B4 -5 160 23 8 1008 826 275 134 25 chr9 55468418 55469372 -68606800 - L1MA4 LINE L1 -411 5889 4731 8 1008 252 294 78 56 chr9 55469412 55469502 -68606670 - B4 SINE B4 -1 291 200 8 1008 223 276 25 50 chr9 55469570 55469650 -68606522 - RSINE1 SINE B4 -83 82 5 8 1008 1151 255 93 23 chr9 55469650 55470164 -68606008 - L1MA4 LINE L1 -1351 4792 4243 8 1008 662 181 63 35 chr9 55470266 55470409 -68605763 + B1_Mus1 SINE Alu 1 147 -1 8 1008 207 0 0 0 chr9 55470429 55470452 -68605720 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1008 7505 168 28 26 chr9 55470689 55470943 -68605229 + Lx5 LINE L1 1793 2047 -3830 8 1008 423 0 0 0 chr9 55470943 55470990 -68605182 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1008 7505 168 28 26 chr9 55470990 55472412 -68603760 + Lx5 LINE L1 2048 3473 -2404 8 1008 9823 172 34 119 chr9 55473069 55476324 -68599848 + Lx5 LINE L1 3476 6452 -598 8 1008 459 0 0 0 chr9 55476324 55476375 -68599797 + (TAAAA)n Simple_repeat Simple_repeat 1 51 0 8 1008 3371 228 70 82 chr9 55476375 55476635 -68599537 + Lx5 LINE L1 6453 6712 -338 8 1008 4125 134 67 25 chr9 55476635 55477082 -68599090 - RMER17D LTR ERVK -19 870 397 8 1008 1251 99 28 0 chr9 55477082 55477264 -68598908 + B2_Mm1t SINE B2 1 187 -6 8 1008 4125 134 67 25 chr9 55477264 55477651 -68598521 - RMER17D LTR ERVK -493 396 1 8 1008 887 262 93 10 chr9 55477652 55477953 -68598219 + Lx6 LINE L1 7133 7458 -2 8 1008 2241 98 28 3 chr9 55478624 55478943 -68597229 - ORR1A2 LTR MaLR 0 327 1 8 1008 22 35 0 0 chr9 55479371 55479400 -68596772 + AT_rich Low_complexity Low_complexity 1 29 0 8 1008 288 190 0 0 chr9 55479504 55479562 -68596610 - Lx9 LINE L1 -171 7473 7416 8 1008 36299 30 0 0 chr9 55479557 55486132 -68590040 - L1Md_T LINE L1 0 6585 1 8 1008 376 198 75 0 chr9 55486135 55486241 -68589931 - Lx9 LINE L1 -215 7429 7316 8 1008 34228 63 5 5 chr9 55486466 55492429 -68583743 - L1Md_F2 LINE L1 -1 6581 631 8 1008 322 332 248 11 chr9 55492502 55492955 -68583217 - L1MDa LINE L1 -5119 1421 862 8 1008 600 276 69 41 chr9 55493264 55493555 -68582617 - L1ME1 LINE L1 -272 5907 5609 8 1008 3065 130 13 4 chr9 55493582 55494060 -68582112 + Lx2B LINE L1 6517 6998 -2 8 1008 329 247 0 56 chr9 55494939 55495029 -68581143 + MTD LTR MaLR 9 93 -326 8 1008 428 226 85 13 chr9 55495015 55495109 -68581063 - PB1D9 SINE Alu -31 89 1 8 1008 738 243 14 7 chr9 55495346 55495491 -68580681 - RSINE1 SINE B4 -16 149 4 8 1008 498 236 27 0 chr9 55496857 55496967 -68579205 + ORR1E LTR MaLR 1 113 -246 8 1008 263 294 11 56 chr9 55496981 55497071 -68579101 + ORR1E LTR MaLR 241 326 -53 8 1008 810 265 136 47 chr9 55497143 55497343 -68578829 - L1M3 LINE L1 -350 5818 5606 8 1008 189 0 0 0 chr9 55497343 55497364 -68578808 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 8 1008 810 265 136 47 chr9 55497364 55497611 -68578561 - L1M3 LINE L1 -563 5605 5333 8 1008 1106 262 89 57 chr9 55497716 55498247 -68577925 + RMER4B LTR ERVK 17 525 -60 8 1008 717 342 0 0 chr9 55498310 55498567 -68577605 - Lx8 LINE L1 -391 7082 6826 8 1008 903 262 63 5 chr9 55498571 55498793 -68577379 - B4A SINE B4 -47 245 11 8 1008 399 299 47 45 chr9 55498805 55499062 -68577110 - L1M3d LINE L1 -4573 1568 1300 8 1008 2132 105 19 0 chr9 55499073 55499386 -68576786 - ORR1A2 LTR MaLR -8 319 1 8 1008 1023 95 0 20 chr9 55500235 55500386 -68575786 - B1_Mus1 SINE Alu 0 148 1 1 1008 23 0 0 0 chr9 55500878 55500901 -68575271 + AT_rich Low_complexity Low_complexity 1 23 0 2 1008 226 0 0 91 chr9 55501213 55501237 -68574935 - Lx LINE L1 -874 5780 5757 3 1008 6221 52 8 9 chr9 55501237 55502035 -68574137 + L1Md_F2 LINE L1 5786 6582 0 4 1008 935 43 34 0 chr9 55502779 55502896 -68573276 - Lx3_Mus LINE L1 -199 6810 6690 5 1008 537 253 26 57 chr9 55504938 55505131 -68571041 + RLTR23 LTR ERV1 244 430 0 6 1008 1093 193 8 59 chr9 55505109 55505346 -68570826 - URR1B DNA MER1_type 0 225 1 7 1008 406 287 28 9 chr9 55505361 55505470 -68570702 + MER5A1 DNA MER1_type 13 123 -43 8 1008 270 56 0 0 chr9 55505519 55505555 -68570617 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 9 1008 295 300 133 46 chr9 55505721 55505962 -68570210 + MIR SINE MIR 1 262 0 1 1008 492 163 57 0 chr9 55506024 55506147 -68570025 + Lx2 LINE L1 6867 6996 -1 1 1008 21 0 0 0 chr9 55506159 55506180 -68569992 + AT_rich Low_complexity Low_complexity 1 21 0 1 1008 244 256 11 109 chr9 55507171 55507263 -68568909 - L1M5 LINE L1 -496 5628 5546 1 1008 512 255 78 22 chr9 55507534 55507802 -68568370 - Lx8 LINE L1 -1650 5994 5698 1 1008 741 291 22 50 chr9 55508968 55509344 -68566828 + L1MA4 LINE L1 2452 2852 -3291 1 1008 1860 142 25 9 chr9 55509370 55509697 -68566475 - Lx3B LINE L1 -2 6971 6640 1 1008 3941 125 8 22 chr9 55509704 55510328 -68565844 + Lx3B LINE L1 6025 6639 -334 1 1008 335 277 21 91 chr9 55510399 55510542 -68565630 + MT2B LTR ERVL 155 287 -314 1 1008 497 266 95 16 chr9 55510421 55510547 -68565625 + B1_Mus2 SINE Alu 7 142 -5 1 1008 317 270 25 32 chr9 55510605 55510762 -68565410 + L1MA4 LINE L1 2974 3129 -3014 1 1008 333 298 155 31 chr9 55510803 55510828 -68565344 + HAL1-3A_ME LINE L1 1988 2012 -846 1 1008 219 103 0 0 chr9 55510828 55510867 -68565305 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 2 1008 333 298 155 31 chr9 55510867 55511035 -68565137 + HAL1-3A_ME LINE L1 2013 2205 -653 1 1008 898 280 69 18 chr9 55511054 55511499 -68564673 + L1MA4 LINE L1 3270 3736 -2407 1 1008 3813 261 54 22 chr9 55511537 55512624 -68563548 + Lx9 LINE L1 6342 7463 -181 2 1008 2246 278 56 21 chr9 55512678 55513660 -68562512 + L1MA4 LINE L1 3726 4741 -1402 1 1008 3883 92 5 36 chr9 55513675 55514253 -68561919 - L1_Mus2 LINE L1 0 6566 6007 2 1008 11734 84 9 5 chr9 55514263 55516633 -68559539 - L1_Mus2 LINE L1 0 6566 4194 2 1008 536 268 6 101 chr9 55516650 55516808 -68559364 + B4 SINE B4 148 290 -2 2 1008 492 18 0 0 chr9 55516818 55516875 -68559297 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1008 1040 300 98 21 chr9 55516922 55517628 -68558544 + L1MA4 LINE L1 5109 5926 -374 1 1008 426 271 56 9 chr9 55518176 55518284 -68557888 - RSINE1 SINE B4 -5 160 48 2 1008 21 36 0 0 chr9 55518537 55518565 -68557607 + AT_rich Low_complexity Low_complexity 1 28 0 2 1008 31621 102 18 2 chr9 55518783 55524818 -68551354 + L1_Mus1 LINE L1 432 6567 0 2 1008 48 18 0 0 chr9 55525295 55525350 -68550822 + AT_rich Low_complexity Low_complexity 1 55 0 2 1008 486 88 0 0 chr9 55525641 55525709 -68550463 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 3 1008 1172 98 37 16 chr9 55525709 55525896 -68550276 - B2_Mm1a SINE B2 0 193 3 3 1008 180 0 0 0 chr9 55526897 55526917 -68549255 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1008 22 35 0 0 chr9 55527360 55527389 -68548783 + AT_rich Low_complexity Low_complexity 1 29 0 3 1008 2288 270 86 63 chr9 55528251 55530095 -68546077 + RMER1A Other Other 1 1005 -25 3 1008 1005 131 24 39 chr9 55530095 55530302 -68545870 + Lx2 LINE L1 6790 6993 -4 3 1008 2288 258 109 95 chr9 55530302 55530329 -68545843 + RMER1A Other Other 1006 1030 0 3 1008 233 392 0 25 chr9 55530638 55530719 -68545453 - MLT1M LTR MaLR -427 245 167 3 1008 1803 213 82 8 chr9 55530710 55531112 -68545060 - ORR1D1-int LTR MaLR -938 432 1 3 1008 1544 205 97 0 chr9 55531112 55531236 -68544936 - ORR1D1 LTR MaLR 0 374 251 3 1008 181 0 33 33 chr9 55531236 55531266 -68544906 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 3 1008 1544 205 97 0 chr9 55531266 55531482 -68544690 - ORR1D1 LTR MaLR -124 250 2 3 1008 776 266 20 5 chr9 55531490 55531690 -68544482 - Lx7 LINE L1 -910 6786 6584 3 1008 1340 263 64 14 chr9 55531693 55532128 -68544044 + L1_Mur3 LINE L1 5345 5801 -79 4 1008 224 329 23 23 chr9 55532193 55532280 -68543892 + B2_Mm2 SINE B2 14 100 -95 4 1008 7870 34 0 1 chr9 55534299 55535236 -68540936 - L1Md_F2 LINE L1 0 6582 5647 4 1008 590 251 152 52 chr9 55535540 55535666 -68540506 + MLT1B LTR MaLR 30 179 -211 4 1008 333 0 0 0 chr9 55535666 55535703 -68540469 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 4 1008 590 251 152 52 chr9 55535703 55535904 -68540268 + MLT1B LTR MaLR 180 390 0 4 1008 11186 138 8 21 chr9 55536233 55539288 -68536884 + Lx2 LINE L1 3985 6996 -1 4 1008 29 90 0 0 chr9 55539332 55539410 -68536762 + AT_rich Low_complexity Low_complexity 1 78 0 4 1008 1198 275 63 58 chr9 55539562 55540146 -68536026 - L1_Rod LINE L1 -180 5667 5081 4 1008 286 232 390 0 chr9 55540751 55540846 -68535326 + B1_Mur2 SINE Alu 1 132 -17 4 1008 1094 128 6 11 chr9 55541919 55541937 -68534235 - B2_Mm1t SINE B2 -19 174 158 4 1008 216 0 0 0 chr9 55541937 55541961 -68534211 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 5 1008 1250 52 0 0 chr9 55541961 55542116 -68534056 - B2_Mm2 SINE B2 -39 156 2 5 1008 488 217 150 30 chr9 55542120 55542253 -68533919 - B1_Mur1 SINE Alu 0 149 1 5 1008 192 286 23 105 chr9 55542679 55542765 -68533407 + L2b LINE L2 3105 3183 -192 5 1008 1199 68 0 0 chr9 55544345 55544492 -68531680 + B1_Mus2 SINE Alu 1 147 0 5 1008 211 105 0 95 chr9 55544493 55544556 -68531616 + A-rich Low_complexity Low_complexity 1 57 0 5 1008 382 322 17 8 chr9 55544705 55544824 -68531348 + ID_B1 SINE B4 84 203 -21 5 1008 378 0 0 0 chr9 55544825 55544867 -68531305 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1008 26 0 0 0 chr9 55545232 55545258 -68530914 + AT_rich Low_complexity Low_complexity 1 26 0 5 1008 186 267 0 0 chr9 55545309 55545354 -68530818 + L2b LINE L2 3326 3370 -5 5 1008 531 253 99 34 chr9 55545983 55546216 -68529956 - L1MD3 LINE L1 -17 7978 7731 5 1008 26 0 0 0 chr9 55547516 55547542 -68528630 + AT_rich Low_complexity Low_complexity 1 26 0 6 1008 182 277 0 0 chr9 55547833 55547880 -68528292 + L2c LINE L2 3277 3323 -64 6 1008 602 79 0 11 chr9 55548074 55548164 -68528008 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 6 1008 207 0 0 0 chr9 55548709 55548732 -68527440 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1008 316 346 78 23 chr9 55549042 55549261 -68526911 + L1M2 LINE L1 5012 5242 -901 6 1008 4819 54 2 2 chr9 55549732 55550330 -68525842 + L1_Mus1 LINE L1 5970 6567 0 6 1008 2096 68 0 7 chr9 55551233 55551516 -68524656 + L1_Mus1 LINE L1 6281 6561 -6 6 1008 273 268 58 84 chr9 55551699 55551854 -68524318 + RMER4B LTR ERVK 10 160 -425 6 1008 1340 105 5 0 chr9 55552261 55552451 -68523721 - B2_Mm1t SINE B2 -2 191 1 6 1008 491 291 65 4 chr9 55552624 55552869 -68523303 - L1MA4 LINE L1 -362 5938 5679 6 1008 180 77 0 0 chr9 55553026 55553052 -68523120 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 7 1008 260 262 40 20 chr9 55553556 55553708 -68522464 - L1M2 LINE L1 -5057 1792 1638 7 1008 516 295 15 8 chr9 55555197 55555330 -68520842 - RSINE1 SINE B4 -26 139 6 7 1008 413 269 270 22 chr9 55555351 55555670 -68520502 - Lx9 LINE L1 -5 7639 7242 7 1008 401 202 40 10 chr9 55555676 55555776 -68520396 + MTD LTR MaLR 317 419 0 7 1008 446 344 98 7 chr9 55556159 55556496 -68519676 - L2a LINE L2 -247 3179 2811 7 1008 21 36 0 0 chr9 55556707 55556735 -68519437 + AT_rich Low_complexity Low_complexity 1 28 0 7 1008 216 0 0 0 chr9 55556839 55556863 -68519309 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1008 324 0 0 0 chr9 55557147 55557183 -68518989 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1008 324 0 0 0 chr9 55557467 55557503 -68518669 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1008 324 0 0 0 chr9 55557787 55557823 -68518349 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1008 252 311 190 41 chr9 55559225 55559529 -68516643 - L2c LINE L2 -31 3344 3024 8 1008 540 325 171 20 chr9 55561058 55561303 -68514869 + B4A SINE B4 11 292 0 8 1008 180 0 0 0 chr9 55561810 55561830 -68514342 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1008 389 326 8 0 chr9 55562183 55562297 -68513875 + B1F SINE Alu 1 120 0 8 1008 1877 238 48 57 chr9 55562728 55564152 -68512020 + L1MA5A LINE L1 860 3356 -2524 8 1008 209 33 0 32 chr9 55564499 55564530 -68511642 + (CAAAAA)n Simple_repeat Simple_repeat 4 33 0 8 1008 7003 120 14 44 chr9 55564606 55566347 -68509825 - Lx2 LINE L1 -272 6725 5036 8 1008 324 272 61 9 chr9 55566348 55566463 -68509709 + Tigger13a DNA MER2_type 584 704 -67 8 1008 735 312 134 24 chr9 55566533 55566927 -68509245 + L1MA5A LINE L1 4682 5116 -764 8 1008 2098 101 67 33 chr9 55566927 55567287 -68508885 + Lx LINE L1 6283 6654 0 8 1008 735 290 95 22 chr9 55567287 55567594 -68508578 + L1MA5A LINE L1 5117 5498 -802 8 1008 379 290 110 7 chr9 55567605 55567751 -68508421 + B3A SINE B2 27 187 -11 9 1008 681 312 41 31 chr9 55567771 55568158 -68508014 + L1MA5A LINE L1 5484 5874 -423 8 1008 186 43 0 0 chr9 55568543 55568566 -68507606 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9 1008 1195 55 0 0 chr9 55568914 55569060 -68507112 + B1_Mus2 SINE Alu 2 147 0 9 1008 26 30 0 0 chr9 55569155 55569188 -68506984 + AT_rich Low_complexity Low_complexity 1 33 0 9 1008 186 240 11 157 chr9 55570282 55570371 -68505801 - MIR3 SINE MIR -45 163 88 9 1008 213 333 0 85 chr9 55570631 55570713 -68505459 + PB1 SINE Alu 33 107 -20 9 1008 21 0 0 0 chr9 55571001 55571022 -68505150 + AT_rich Low_complexity Low_complexity 1 21 0 9 1008 582 153 0 0 chr9 55571297 55571408 -68504764 + GA-rich Low_complexity Low_complexity 3 113 0 9 1008 195 42 0 0 chr9 55571966 55571990 -68504182 + (TTA)n Simple_repeat Simple_repeat 2 25 0 9 1008 1043 72 22 0 chr9 55571993 55572131 -68504041 - B1_Mus2 SINE Alu -6 141 1 9 1008 280 304 216 29 chr9 55572281 55572420 -68503752 + RSINE1 SINE B4 1 165 0 1 1008 592 147 26 0 chr9 55572549 55572665 -68503507 + CT-rich Low_complexity Low_complexity 2 120 0 1 15 16555 66 11 11 chr9 55572698 55575249 -68500923 - L1Md_Gf LINE L1 -2408 3478 832 1 1009 324 302 136 28 chr9 55575574 55575860 -68500312 + L1M5 LINE L1 5317 5633 -607 1 1009 1172 180 338 3 chr9 55577052 55577398 -68498774 - RMER15 LTR ERVL -92 483 22 1 1009 556 73 0 0 chr9 55577741 55577823 -68498349 + L1_Mus2 LINE L1 6485 6566 0 1 1009 1295 101 17 0 chr9 55577844 55578022 -68498150 + B2_Mm2 SINE B2 1 181 -14 1 1009 301 358 29 36 chr9 55578381 55578520 -68497652 - L1ME2 LINE L1 -17 6147 6010 1 1009 1046 141 0 0 chr9 55578558 55578707 -68497465 + B1_Mur4 SINE Alu 1 149 -1 1 1009 338 214 122 84 chr9 55579921 55580028 -68496144 + PB1 SINE Alu 8 127 0 1 1009 345 47 0 0 chr9 55580152 55580195 -68495977 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1009 432 51 0 0 chr9 55580196 55580255 -68495917 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1009 500 301 35 0 chr9 55580538 55580651 -68495521 - RSINE1 SINE B4 -14 151 35 1 1009 418 319 94 25 chr9 55580700 55581060 -68495112 - L1M2c LINE L1 -3560 3285 2901 1 1009 1273 289 24 35 chr9 55581132 55581501 -68494671 - MTE2b LTR MaLR -5 374 10 1 1009 308 322 111 42 chr9 55581585 55582128 -68494044 - L1M2c LINE L1 -4109 2740 2148 1 1009 220 370 0 0 chr9 55582185 55582312 -68493860 + A-rich Low_complexity Low_complexity 4 130 0 1 1009 225 314 0 0 chr9 55582235 55582305 -68493867 + GA-rich Low_complexity Low_complexity 3 72 0 1 1009 1631 207 154 0 chr9 55583077 55583331 -68492841 - MTC LTR MaLR -8 413 142 1 1009 616 24 24 0 chr9 55583331 55583413 -68492759 + (CTCA)n Simple_repeat Simple_repeat 1 84 0 1 1009 1631 207 154 0 chr9 55583413 55583516 -68492656 - MTC LTR MaLR -280 141 2 1 1009 375 274 104 0 chr9 55584262 55584368 -68491804 - B3 SINE B2 -94 122 6 1 1009 345 75 0 0 chr9 55584446 55584499 -68491673 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1009 979 78 6 31 chr9 55585001 55585160 -68491012 - L1Md_F3 LINE L1 0 6584 6430 1 1009 254 345 39 34 chr9 55585161 55585365 -68490807 - L1MEg LINE L1 -2037 4109 3905 1 1009 296 205 115 0 chr9 55585633 55585711 -68490461 - L1MEg LINE L1 -4958 1284 1198 1 1009 852 176 209 0 chr9 55585718 55585905 -68490267 + URR1A DNA MER1_type 1 226 0 1 1009 5255 77 0 1 chr9 55586150 55586839 -68489333 - L1_Mus2 LINE L1 -1 6565 5878 1 1009 4262 95 2 0 chr9 55586839 55587419 -68488753 + L1_Mus2 LINE L1 5280 5860 -23 1 1009 237 318 32 0 chr9 55587630 55587693 -68488479 - L1MEg LINE L1 -5492 644 580 1 1009 622 238 31 8 chr9 55588273 55588400 -68487772 + RSINE1 SINE B4 4 133 -32 1 1009 464 198 225 0 chr9 55589152 55589263 -68486909 + B1_Mur3 SINE Alu 5 140 -9 1 1009 322 299 12 34 chr9 55590209 55590358 -68485814 + MER5A1 DNA MER1_type 9 174 -15 1 1009 1862 72 245 3 chr9 55591632 55591804 -68484368 + MTB LTR MaLR 1 186 -214 1 1009 2094 72 34 0 chr9 55591804 55592096 -68484076 + L1_Mus1 LINE L1 6266 6567 0 1 1009 191 36 0 35 chr9 55592101 55592130 -68484042 + (CAAG)n Simple_repeat Simple_repeat 2 29 0 1 1009 1862 72 245 3 chr9 55592130 55592273 -68483899 + MTB LTR MaLR 192 399 -1 1 1009 7456 87 20 6 chr9 55592679 55593867 -68482305 - L1_Mus3 LINE L1 -5 6633 5430 1 1009 11428 105 21 5 chr9 55593865 55595609 -68480563 + L1_Mus3 LINE L1 3644 5416 -467 1 1009 386 272 52 23 chr9 55596704 55596877 -68479295 + RLTR42-int LTR ERVK 1223 1400 -4122 1 1009 7482 69 4 1 chr9 55597778 55599037 -68477135 - L1_Mus1 LINE L1 -1 6566 5305 1 1009 10297 94 5 11 chr9 55599033 55601252 -68474920 + L1_Mus2 LINE L1 4359 6566 0 1 1009 347 162 12 0 chr9 55601482 55601562 -68474610 - Lx4A LINE L1 0 7058 6978 1 1009 27 62 0 0 chr9 55601675 55601723 -68474449 + AT_rich Low_complexity Low_complexity 1 48 0 1 1009 688 247 90 25 chr9 55601760 55602038 -68474134 - L1MC LINE L1 -2449 3697 3402 1 1009 462 322 69 21 chr9 55602609 55602942 -68473230 - L1M2 LINE L1 -646 5645 5297 1 1009 410 36 0 0 chr9 55602983 55603039 -68473133 + L1Md_F3 LINE L1 6515 6570 -14 1 1009 904 296 169 35 chr9 55603161 55603984 -68472188 - L1M2 LINE L1 -1088 5055 4123 1 1009 533 259 34 17 chr9 55604134 55604311 -68471861 - L1M2 LINE L1 -2486 3657 3478 1 1009 556 130 264 29 chr9 55604923 55605144 -68471028 + RMER6C LTR ERVK 4 303 -387 1 1009 572 306 102 27 chr9 55605151 55605601 -68470571 - L1MC LINE L1 -2905 3241 2758 1 1009 310 315 107 66 chr9 55606511 55606783 -68469389 + B4 SINE B4 2 284 -8 1 1009 311 336 119 4 chr9 55606827 55607054 -68469118 - L1M4 LINE L1 -3755 2391 2139 1 1009 364 338 37 15 chr9 55607500 55607516 -68468656 + B4 SINE B4 70 88 -204 1 1009 706 194 1 13 chr9 55607516 55607664 -68468508 + B1_Mur4 SINE Alu 1 140 -9 1 1009 237 308 37 46 chr9 55607935 55608044 -68468128 + PB1D9 SINE Alu 2 109 -11 1 1009 297 186 0 0 chr9 55608050 55608120 -68468052 + (CAT)n Simple_repeat Simple_repeat 3 72 0 1 1009 304 309 23 40 chr9 55608195 55608370 -68467802 + GA-rich Low_complexity Low_complexity 2 173 0 1 1009 470 264 216 11 chr9 55608414 55608590 -68467582 - B3 SINE B2 -4 212 1 1 1009 183 299 44 59 chr9 55608611 55608746 -68467426 - L2 LINE L2 -752 2667 2535 1 1009 735 95 0 0 chr9 55610262 55610367 -68465805 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1009 185 298 35 0 chr9 55610452 55610509 -68465663 - L2c LINE L2 -1 3386 3328 1 1009 648 334 100 41 chr9 55610862 55611374 -68464798 + L2 LINE L2 1142 1683 -1736 1 1009 26 30 0 0 chr9 55611410 55611443 -68464729 + AT_rich Low_complexity Low_complexity 1 33 0 1 1009 2942 40 0 0 chr9 55611443 55611795 -68464377 - L1Md_T LINE L1 -2 6580 6229 1 1009 2241 30 0 3 chr9 55611795 55612091 -68464081 + L1Md_A LINE L1 923 1205 -5519 1 1009 1951 133 133 3 chr9 55612370 55612761 -68463411 - Lx3A LINE L1 0 6981 6540 1 1009 752 206 62 12 chr9 55612809 55612971 -68463201 - RMER19B LTR ERVK -378 524 355 1 1009 287 169 17 17 chr9 55612969 55613029 -68463143 + RMER19B LTR ERVK 832 891 -11 1 1009 189 0 0 0 chr9 55613435 55613456 -68462716 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1009 1109 82 7 0 chr9 55613456 55613602 -68462570 - B1_Mm SINE Alu 0 147 1 1 1009 295 289 44 0 chr9 55613603 55613693 -68462479 - B4A SINE B4 -197 95 2 1 1009 444 311 120 66 chr9 55613793 55614051 -68462121 + B4 SINE B4 12 283 -9 1 1009 2564 239 72 27 chr9 55614082 55614898 -68461274 + Lx9 LINE L1 6620 7472 -172 1 1009 345 141 0 0 chr9 55614904 55614975 -68461197 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1009 374 297 175 33 chr9 55615226 55615466 -68460706 + B4A SINE B4 1 274 -18 1 1009 7651 43 3 1 chr9 55616247 55617562 -68458610 - L1Md_F2 LINE L1 -14 6568 5252 1 1009 33208 56 3 26 chr9 55617562 55623822 -68452350 - L1Md_A LINE L1 0 6585 379 1 1009 252 212 235 12 chr9 55623971 55624052 -68452120 - B1F2 SINE Alu -45 104 6 1 1009 210 37 0 0 chr9 55624823 55624850 -68451322 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1009 468 264 126 0 chr9 55624850 55625009 -68451163 - Lx7 LINE L1 -388 7308 7130 1 1009 1367 234 45 0 chr9 55625033 55625387 -68450785 + Lx7 LINE L1 6745 7114 -582 1 1009 305 0 50 0 chr9 55625503 55625543 -68450629 + (TATG)n Simple_repeat Simple_repeat 3 44 0 1 1009 1166 43 7 0 chr9 55625545 55625685 -68450487 - B1_Mus1 SINE Alu -6 142 2 1 1009 376 307 11 11 chr9 55625846 55625935 -68450237 + B1F1 SINE Alu 3 91 -58 1 1009 4386 129 3 1 chr9 55626003 55626731 -68449441 - Lx3B LINE L1 -1103 4783 4055 1 1009 8058 123 15 7 chr9 55626733 55628893 -68447279 + Lx3B LINE L1 4793 6970 -3 1 1009 13158 105 22 23 chr9 55629303 55632395 -68443777 + L1Md_F LINE L1 31 3097 -2786 1 1009 14747 147 45 8 chr9 55632882 55636467 -68439705 + L1VL4 LINE L1 598 4317 -1569 1 1009 4496 148 38 1 chr9 55636472 55637271 -68438901 + Lx2 LINE L1 6026 6853 -144 1 1009 746 278 73 23 chr9 55637271 55637613 -68438559 + RLTR10D LTR ERVK 1 359 0 1 1009 751 135 57 0 chr9 55637613 55637754 -68438418 + Lx2 LINE L1 6848 6996 -1 1 1009 1526 113 4 64 chr9 55638041 55638306 -68437866 + Lx LINE L1 6399 6647 -7 1 1009 1211 54 0 0 chr9 55638495 55638643 -68437529 - B1_Mus1 SINE Alu 0 148 1 1 1009 2414 186 28 37 chr9 55639762 55640297 -68435875 + Lx2B LINE L1 6471 7000 0 1 1009 525 335 62 29 chr9 55641219 55641493 -68434679 + L1MC LINE L1 2312 2594 -3552 1 1009 7035 106 56 16 chr9 55642427 55643410 -68432762 + Lx3A LINE L1 5850 6852 -129 1 1009 194 0 39 0 chr9 55643410 55643436 -68432736 + (TGG)n Simple_repeat Simple_repeat 1 27 0 1 1009 7035 106 56 16 chr9 55643436 55643540 -68432632 + Lx3A LINE L1 6853 6979 -2 1 1009 695 45 27 18 chr9 55643660 55643772 -68432400 + L1Md_F3 LINE L1 6470 6582 -2 1 1009 850 227 46 69 chr9 55643991 55644209 -68431963 + B3 SINE B2 2 214 -2 1 1009 23 0 0 0 chr9 55644209 55644232 -68431940 + AT_rich Low_complexity Low_complexity 1 23 0 1 1009 246 265 0 0 chr9 55644282 55644331 -68431841 + PB1 SINE Alu 75 123 -4 1 1009 690 179 0 0 chr9 55644370 55644504 -68431668 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 1 1009 380 311 206 26 chr9 55644826 55645054 -68431118 + B4 SINE B4 18 286 -6 1 1009 438 20 0 0 chr9 55645228 55645279 -68430893 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1009 937 236 21 0 chr9 55645279 55645470 -68430702 - B3 SINE B2 -21 195 1 1 1009 22 0 0 0 chr9 55645481 55645503 -68430669 + AT_rich Low_complexity Low_complexity 1 22 0 1 1009 411 294 109 0 chr9 55645544 55645663 -68430509 + RSINE1 SINE B4 4 135 -30 1 1009 426 20 0 0 chr9 55645664 55645715 -68430457 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1009 2809 172 40 23 chr9 55646007 55646577 -68429595 - RMER1B Other Other 0 1066 487 1 1009 576 231 149 3 chr9 55646579 55646742 -68429430 - RMER1B Other Other -750 316 182 1 1009 414 0 0 0 chr9 55647016 55647062 -68429110 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1009 1036 201 71 5 chr9 55647064 55647274 -68428898 + URR1A DNA MER1_type 2 225 -1 2 1009 712 107 0 69 chr9 55647923 55648019 -68428153 + B2_Mm1t SINE B2 64 155 -38 2 1009 315 0 0 0 chr9 55648019 55648054 -68428118 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 1009 712 107 0 69 chr9 55648054 55648087 -68428085 + B2_Mm1t SINE B2 156 184 -9 2 1009 728 62 0 0 chr9 55649272 55649369 -68426803 - L1_Mus2 LINE L1 -256 6310 6214 2 1009 1937 67 4 46 chr9 55649369 55649649 -68426523 + L1_Mus2 LINE L1 6298 6565 -1 2 1009 289 302 103 11 chr9 55649664 55649838 -68426334 + L1ME3 LINE L1 5879 6068 -94 2 1009 1247 27 0 14 chr9 55650757 55650905 -68425267 + B1_Mus2 SINE Alu 2 147 0 2 1009 648 70 0 0 chr9 55650986 55651072 -68425100 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 1009 356 282 49 49 chr9 55652033 55652197 -68423975 - RNLTR23 LTR ERVK 0 642 479 2 1009 318 284 0 54 chr9 55653480 55653573 -68422599 + B4 SINE B4 4 91 -201 2 1009 22 35 0 0 chr9 55653725 55653754 -68422418 + AT_rich Low_complexity Low_complexity 1 29 0 2 1009 50 51 0 0 chr9 55653930 55654008 -68422164 + AT_rich Low_complexity Low_complexity 1 78 0 2 1009 650 250 73 21 chr9 55654180 55654372 -68421800 - B3A SINE B2 -6 210 9 2 1009 244 262 69 38 chr9 55654398 55654529 -68421643 - B2_Mm2 SINE B2 -8 187 53 2 1009 443 245 10 48 chr9 55654479 55654582 -68421590 - RSINE1 SINE B4 -62 103 5 2 1009 264 100 0 0 chr9 55655032 55655072 -68421100 + (TGGA)n Simple_repeat Simple_repeat 2 41 0 2 1009 28 61 0 0 chr9 55656785 55656834 -68419338 + AT_rich Low_complexity Low_complexity 1 49 0 2 1009 2613 143 215 5 chr9 55657383 55658029 -68418143 + L1_Mur3 LINE L1 2269 3050 -2830 2 1009 534 103 0 0 chr9 55658038 55658125 -68418047 + (GGA)n Simple_repeat Simple_repeat 3 89 0 2 1009 361 152 89 0 chr9 55658162 55658250 -68417922 + Lx7 LINE L1 5158 5252 -634 2 1009 10296 66 1 1 chr9 55658247 55660344 -68415828 - L1Md_F2 LINE L1 -8 6574 4479 2 1009 2761 188 101 20 chr9 55660343 55661462 -68414710 + Lx7 LINE L1 5260 6489 -1207 2 1009 3357 152 41 37 chr9 55661465 55662081 -68414091 + Lx3C LINE L1 6352 6969 -7 2 1009 413 300 118 25 chr9 55662538 55662869 -68413303 + L1M4 LINE L1 2573 2938 -3208 2 1009 24 67 0 0 chr9 55663499 55663544 -68412628 + AT_rich Low_complexity Low_complexity 1 45 0 2 1009 228 257 39 19 chr9 55663606 55663709 -68412463 + L1M4 LINE L1 4289 4393 -1753 2 1009 2022 211 58 52 chr9 55663709 55664157 -68412015 + MT2A LTR ERVL 1 453 -80 2 1009 327 113 0 0 chr9 55664157 55664210 -68411962 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1009 2022 211 58 52 chr9 55664210 55664277 -68411895 + MT2A LTR ERVL 454 518 -15 2 1009 603 117 0 0 chr9 55664278 55664372 -68411800 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 1009 180 341 0 0 chr9 55664402 55664446 -68411726 + L2b LINE L2 3316 3359 -16 2 1009 843 163 256 0 chr9 55664671 55664843 -68411329 - B3 SINE B2 0 216 1 2 1009 391 48 16 16 chr9 55664874 55664937 -68411235 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1009 446 274 52 12 chr9 55664941 55665074 -68411098 - B3A SINE B2 -41 175 27 2 1009 664 279 135 10 chr9 55665656 55666043 -68410129 - L1MA4 LINE L1 -387 6925 6498 2 1009 226 262 187 12 chr9 55666159 55666325 -68409847 - L1MA4 LINE L1 -2912 4252 4058 2 1009 886 169 0 21 chr9 55666333 55666478 -68409694 - B1_Mur3 SINE Alu -7 142 1 2 1009 472 335 122 64 chr9 55666515 55666999 -68409173 - L1MA4 LINE L1 -3199 3965 3454 2 1009 249 259 117 42 chr9 55667025 55667239 -68408933 - L1_Rod LINE L1 -3419 2428 2199 2 1009 22 56 0 0 chr9 55667259 55667295 -68408877 + AT_rich Low_complexity Low_complexity 1 36 0 2 1009 254 234 0 0 chr9 55667627 55667704 -68408468 - L1MA4 LINE L1 -5139 2029 1953 2 1009 261 0 0 0 chr9 55667875 55667904 -68408268 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1009 427 264 123 35 chr9 55668185 55668299 -68407873 + RSINE1 SINE B4 3 126 -39 2 1009 295 253 12 12 chr9 55668955 55669035 -68407137 + B4 SINE B4 4 83 -209 2 1009 381 289 22 0 chr9 55669715 55669805 -68406367 + ID_B1 SINE B4 73 164 -60 2 1009 30980 109 8 16 chr9 55669813 55671452 -68404720 + L1Md_F3 LINE L1 446 2055 -3828 2 1009 2156 93 3 48 chr9 55671452 55671789 -68404383 + RLTRETN_Mm LTR ERVK 1 322 0 2 1009 30980 66 8 5 chr9 55671789 55675295 -68400877 + L1Md_F3 LINE L1 2056 5586 -297 2 1009 8020 38 20 2 chr9 55675296 55676275 -68399897 + L1Md_F3 LINE L1 5588 6584 0 2 1009 329 272 0 12 chr9 55676298 55676380 -68399792 + ID_B1 SINE B4 143 223 -1 2 1009 33859 35 0 2 chr9 55676450 55681945 -68394227 + L1Md_T LINE L1 8 5589 -297 2 1009 9056 4 0 0 chr9 55681945 55682941 -68393231 + L1Md_T LINE L1 5590 6585 0 2 1009 37 39 0 0 chr9 55682941 55682992 -68393180 + AT_rich Low_complexity Low_complexity 1 51 0 2 1009 265 301 73 52 chr9 55683018 55683271 -68392901 + L1M2 LINE L1 2339 2606 -3537 2 1009 7439 28 0 0 chr9 55683271 55684137 -68392035 + L1Md_T LINE L1 5716 6581 -1 2 1009 265 301 73 52 chr9 55684137 55684226 -68391946 + L1M2 LINE L1 2607 2688 -3455 2 1009 338 294 35 23 chr9 55684331 55684418 -68391754 + ID_B1 SINE B4 137 224 0 2 1009 805 241 39 0 chr9 55684635 55684838 -68391334 + Lx5 LINE L1 6829 7039 -11 2 1009 470 323 0 52 chr9 55685084 55685257 -68390915 + RSINE1 SINE B4 2 165 0 2 1009 180 111 0 0 chr9 55685260 55685287 -68390885 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1009 259 224 99 37 chr9 55685463 55685625 -68390547 + L1ME1 LINE L1 5800 5971 -208 2 1009 858 327 73 10 chr9 55686260 55686655 -68389517 + Lx8 LINE L1 6923 7342 -131 2 1009 960 268 92 6 chr9 55686949 55687298 -68388874 + MTEa LTR MaLR 1 379 0 2 1009 3640 39 5 22 chr9 55687551 55687995 -68388177 + RLTR10C LTR ERVK 1 436 0 2 1009 203 279 114 9 chr9 55688029 55688134 -68388038 + MIRc SINE MIR 88 203 -65 2 1009 246 370 49 69 chr9 55688773 55688976 -68387196 + MLT1F2 LTR MaLR 166 364 -196 2 1009 427 262 28 17 chr9 55689204 55689370 -68386802 - L1M3 LINE L1 -621 5621 5457 2 1009 219 173 0 0 chr9 55689490 55689542 -68386630 + CT-rich Low_complexity Low_complexity 1 52 0 2 1009 412 307 19 7 chr9 55689648 55689802 -68386370 + Lx9 LINE L1 7254 7409 -235 2 1009 634 315 156 47 chr9 55689967 55690502 -68385670 + Lx8 LINE L1 6662 7263 -210 2 1009 342 45 0 0 chr9 55690502 55690546 -68385626 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1009 478 321 67 77 chr9 55690546 55690761 -68385411 + Lx8 LINE L1 7264 7468 -5 2 1009 543 304 47 31 chr9 55690815 55691424 -68384748 - L1M3 LINE L1 -803 5488 4842 2 1009 851 203 112 0 chr9 55691424 55691611 -68384561 + B3 SINE B2 2 209 -7 2 1009 543 321 53 48 chr9 55691611 55691848 -68384324 - L1M3 LINE L1 -1299 4841 4623 2 1009 8010 126 15 11 chr9 55691969 55693889 -68382283 + L1VL4 LINE L1 195 2123 -1436 2 1009 7280 124 28 48 chr9 55693861 55696137 -68380035 + L1_Mus4 LINE L1 4422 6630 -6 2 1009 238 304 85 16 chr9 55697118 55697267 -68378905 - L1M3e LINE L1 -4964 2073 1914 2 1009 5152 61 3 6 chr9 55697267 55697932 -68378240 - L1Md_F2 LINE L1 0 6582 5920 2 1009 237 326 90 35 chr9 55697932 55697982 -68378190 - L1M3e LINE L1 -5124 1913 1863 2 1009 4899 61 6 5 chr9 55698621 55699286 -68376886 + L1_Mus2 LINE L1 5936 6566 0 2 1009 36193 13 0 9 chr9 55699346 55704218 -68371954 + L1Md_A LINE L1 471 5301 -582 2 1009 1553 43 0 0 chr9 55704218 55704406 -68371766 + B2_Mm1a SINE B2 2 189 -4 2 1009 36193 11 0 2 chr9 55704406 55704699 -68371473 + L1Md_A LINE L1 5302 5586 -297 2 126 8880 12 0 0 chr9 55704699 55705745 -68370427 + L1Md_A LINE L1 5587 6582 0 2 1010 1105 277 22 11 chr9 55706422 55706699 -68369473 - B4 SINE B4 -4 288 9 2 1010 378 0 0 0 chr9 55707804 55707846 -68368326 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1010 23 0 0 0 chr9 55708186 55708209 -68367963 + AT_rich Low_complexity Low_complexity 1 23 0 2 1010 235 254 240 11 chr9 55708250 55708529 -68367643 + L1MEc LINE L1 2112 2454 -3946 2 1010 649 277 30 37 chr9 55708802 55709072 -68367100 + L1M4 LINE L1 5551 5818 -360 2 1010 3279 148 40 2 chr9 55709340 55709964 -68366208 + L1_Mur1 LINE L1 4396 5043 -843 2 1010 325 246 0 0 chr9 55710131 55710196 -68365976 + ID4 SINE ID 2 66 -17 2 1010 316 306 104 4 chr9 55710205 55710454 -68365718 + L1ME1 LINE L1 5673 5946 -233 2 1010 307 264 9 0 chr9 55710577 55710687 -68365485 + L1MA10 LINE L1 6213 6323 -11 2 1010 27 0 0 0 chr9 55711156 55711183 -68364989 + AT_rich Low_complexity Low_complexity 1 27 0 2 1010 299 333 30 55 chr9 55711206 55711406 -68364766 - Lx7 LINE L1 -513 7183 6989 2 1010 605 121 8 0 chr9 55712543 55712667 -68363505 + (TC)n Simple_repeat Simple_repeat 2 126 0 2 1010 26 30 0 0 chr9 55712807 55712840 -68363332 + AT_rich Low_complexity Low_complexity 1 33 0 2 1010 406 318 37 9 chr9 55712879 55712987 -68363185 - RSINE1 SINE B4 -53 112 2 2 1010 3057 137 0 0 chr9 55713225 55713950 -68362222 - Lx2 LINE L1 -980 6017 5293 2 1010 7901 36 0 3 chr9 55713950 55715404 -68360768 - L1Md_F3 LINE L1 0 6584 5151 2 1010 4949 156 42 3 chr9 55715401 55716369 -68359803 - Lx2 LINE L1 -581 5296 4291 2 1010 696 96 0 0 chr9 55716789 55716883 -68359289 - Lx3_Mus LINE L1 -1319 5690 5597 2 1010 8978 74 16 24 chr9 55716883 55718224 -68357948 + Lx3_Mus LINE L1 5671 7001 -8 2 1010 22 0 0 0 chr9 55718224 55718246 -68357926 + AT_rich Low_complexity Low_complexity 1 22 0 2 1010 612 254 0 16 chr9 55718892 55719020 -68357152 + B1_Mur1 SINE Alu 1 126 -23 2 1010 2698 180 44 2 chr9 55719021 55719500 -68356672 + Lx2A1 LINE L1 6501 6999 -9 2 1010 435 299 22 36 chr9 55719674 55719813 -68356359 + ID_B1 SINE B4 87 223 -1 2 1010 363 260 0 19 chr9 55719825 55719922 -68356250 + ID4 SINE ID 11 104 -48 2 1010 31 0 0 0 chr9 55720109 55720140 -68356032 + AT_rich Low_complexity Low_complexity 1 31 0 2 1010 4876 122 6 15 chr9 55720285 55721017 -68355155 - Lx2 LINE L1 -7 6990 6266 2 1010 1688 105 14 17 chr9 55721017 55721308 -68354864 + Lx2 LINE L1 5960 6249 -748 2 1010 286 311 48 0 chr9 55721644 55721747 -68354425 + PB1D10 SINE Alu 2 109 -8 2 1010 343 310 0 41 chr9 55721769 55721890 -68354282 + PB1D10 SINE Alu 1 116 -1 2 1010 388 248 215 0 chr9 55721890 55722011 -68354161 + RSINE1 SINE B4 2 148 -17 2 1010 246 179 282 27 chr9 55722011 55722039 -68354133 + B2_Mm1t SINE B2 1 187 -6 2 1010 337 153 28 0 chr9 55722825 55722897 -68353275 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1010 984 60 97 0 chr9 55722905 55723039 -68353133 - B1_Mus2 SINE Alu 0 147 1 2 1010 6441 62 26 5 chr9 55723740 55724588 -68351584 - L1Md_F2 LINE L1 -12 6570 5705 2 1010 244 337 130 16 chr9 55724688 55725119 -68351053 - L1M5 LINE L1 -2341 3805 3326 2 1010 512 264 54 31 chr9 55725528 55725657 -68350515 - RSINE1 SINE B4 -29 136 5 3 1010 309 298 34 26 chr9 55725820 55725937 -68350235 + L1MEg LINE L1 44 161 -5923 3 1010 192 77 0 0 chr9 55726402 55726428 -68349744 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1010 378 0 0 0 chr9 55726439 55726481 -68349691 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1010 351 227 40 13 chr9 55726547 55726623 -68349549 - RSINE1 SINE B4 -43 122 45 3 1010 10304 46 2 0 chr9 55727423 55728713 -68347459 - L1_Mm LINE L1 -1522 4361 3069 3 1010 2845 72 165 1 chr9 55728711 55729401 -68346771 + L1_Mus3 LINE L1 5834 6636 -2 3 1010 321 85 0 78 chr9 55729402 55729466 -68346706 + Lx3A LINE L1 6923 6981 0 3 1010 298 22 65 0 chr9 55729475 55729521 -68346651 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1010 333 279 88 54 chr9 55729762 55729910 -68346262 - L1MEf LINE L1 -4501 1699 1547 3 1010 364 362 109 0 chr9 55729919 55730093 -68346079 - L1MEf LINE L1 -4770 1430 1238 3 1010 296 328 32 11 chr9 55730095 55730280 -68345892 - L1MEf LINE L1 -4842 1358 1170 3 1010 387 286 71 10 chr9 55730435 55730534 -68345638 - B1F2 SINE Alu -11 138 34 3 1010 228 315 18 9 chr9 55730813 55730925 -68345247 - HAL1 LINE L1 -846 1661 1549 3 1010 351 250 43 69 chr9 55730951 55731067 -68345105 + MLT1A0 LTR MaLR 236 348 -17 3 1010 245 296 0 0 chr9 55731262 55731316 -68344856 - ID2 SINE ID -17 66 13 3 1010 991 150 7 0 chr9 55731406 55731553 -68344619 - B1_Mur4 SINE Alu -1 149 2 3 1010 829 248 102 145 chr9 55732581 55732973 -68343199 + MTEa LTR MaLR 5 379 0 3 1010 301 311 43 129 chr9 55733364 55733504 -68342668 + B4A SINE B4 4 131 -161 3 1010 756 255 5 41 chr9 55733678 55733874 -68342298 + B3A SINE B2 9 197 -1 3 1010 14834 198 56 31 chr9 55733980 55738233 -68337939 + Lx5 LINE L1 2681 7037 -13 3 1010 373 319 35 29 chr9 55738256 55738427 -68337745 + L1M4 LINE L1 1261 1432 -5110 3 1010 1150 149 62 5 chr9 55738476 55738685 -68337487 + URR1B DNA MER1_type 5 225 0 3 1010 373 304 10 1 chr9 55738713 55738848 -68337324 - Lx8 LINE L1 -1203 6493 6358 3 1010 1757 275 52 9 chr9 55738853 55739396 -68336776 + Lx7 LINE L1 6766 7331 -365 3 1010 888 251 39 13 chr9 55739586 55739820 -68336352 - Lx8 LINE L1 -323 7150 6911 3 1010 655 225 28 0 chr9 55740348 55740490 -68335682 - B1_Mur2 SINE Alu -3 146 1 3 1010 23 0 0 0 chr9 55741092 55741115 -68335057 + AT_rich Low_complexity Low_complexity 1 23 0 3 1010 24 0 0 29 chr9 55741487 55741505 -68334667 + AT_rich Low_complexity Low_complexity 1 18 0 3 1010 207 0 0 0 chr9 55741505 55741528 -68334644 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1010 24 0 0 29 chr9 55741528 55741544 -68334628 + AT_rich Low_complexity Low_complexity 1 16 0 3 1010 784 189 34 20 chr9 55741709 55741855 -68334317 + B1_Mur3 SINE Alu 2 149 0 3 1010 977 308 18 14 chr9 55741867 55742147 -68334025 + B4A SINE B4 4 284 -8 3 1010 208 236 18 0 chr9 55742153 55742208 -68333964 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1010 419 275 85 26 chr9 55743696 55743849 -68332323 - L1M4 LINE L1 -2006 4140 3979 3 1010 386 240 0 103 chr9 55743849 55743956 -68332216 - RSINE1 SINE B4 -69 96 1 3 1010 22 0 0 0 chr9 55744407 55744429 -68331743 + AT_rich Low_complexity Low_complexity 1 22 0 3 1010 1072 214 28 5 chr9 55744485 55744696 -68331476 - B3 SINE B2 0 216 1 3 1010 246 250 29 0 chr9 55744834 55744902 -68331270 + L1MA9 LINE L1 5835 5904 -285 3 1010 341 248 104 32 chr9 55745020 55745174 -68330998 + L1MA9 LINE L1 6063 6227 -85 3 1010 216 0 0 0 chr9 55745223 55745247 -68330925 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 3 1010 269 257 81 50 chr9 55745264 55745424 -68330748 + L1MC LINE L1 4399 4563 -1583 3 1010 4224 76 14 14 chr9 55745424 55746009 -68330163 + L1_Mus3 LINE L1 6039 6623 -15 3 1010 1128 266 95 20 chr9 55746215 55746771 -68329401 + Ricksha_0 DNA MuDR 352 949 -777 3 1010 258 141 86 86 chr9 55746839 55746909 -68329263 + L1MC1 LINE L1 6244 6313 -20 3 1010 1083 149 119 0 chr9 55746911 55747112 -68329060 - URR1A DNA MER1_type -1 225 1 3 1010 723 285 151 79 chr9 55747143 55747760 -68328412 + Lx9 LINE L1 6978 7638 -6 3 1010 201 74 0 0 chr9 55747786 55747813 -68328359 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1010 235 0 57 0 chr9 55747994 55748029 -68328143 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 3 1010 210 310 0 0 chr9 55748206 55748264 -68327908 + (TATG)n Simple_repeat Simple_repeat 3 60 0 3 1010 225 0 0 0 chr9 55748311 55748336 -68327836 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1010 570 268 84 58 chr9 55748339 55748496 -68327676 - B4A SINE B4 -96 196 29 3 1010 1154 187 67 145 chr9 55748496 55748528 -68327644 + ORR1D1 LTR MaLR 1 34 -340 3 1010 207 0 0 0 chr9 55748528 55748551 -68327621 + (G)n Simple_repeat Simple_repeat 1 23 0 3 1010 1154 187 67 145 chr9 55748551 55748924 -68327248 + ORR1D1 LTR MaLR 35 373 -1 3 1010 570 268 84 58 chr9 55748924 55748956 -68327216 - B4A SINE B4 -264 28 2 3 1010 836 276 45 0 chr9 55748957 55749178 -68326994 - B4A SINE B4 -61 231 1 3 1010 822 222 45 20 chr9 55749493 55749691 -68326481 + B3 SINE B2 4 206 -10 3 1010 719 164 69 28 chr9 55750880 55751024 -68325148 - B1_Mur4 SINE Alu 0 150 1 3 1010 251 239 32 54 chr9 55751715 55751808 -68324364 + MLT1A1 LTR MaLR 313 403 -5 3 1010 932 99 7 0 chr9 55752435 55752577 -68323595 + (GTATG)n Simple_repeat Simple_repeat 3 145 0 3 1010 547 220 41 28 chr9 55752870 55753015 -68323157 + B1_Mur2 SINE Alu 1 147 -2 3 1010 27 0 0 0 chr9 55753016 55753043 -68323129 + AT_rich Low_complexity Low_complexity 1 27 0 3 1010 267 243 171 0 chr9 55753327 55753397 -68322775 - RSINE1 SINE B4 -14 151 70 3 1010 7932 138 55 15 chr9 55754058 55755588 -68320584 + Lx4B LINE L1 5440 7033 -25 3 1010 441 0 0 0 chr9 55755594 55755643 -68320529 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 3 1010 874 189 152 5 chr9 55755795 55756018 -68320154 - ORR1D1 LTR MaLR -4 370 115 3 1010 337 345 49 31 chr9 55756087 55756374 -68319798 - L1_Mur3 LINE L1 -3828 2052 1761 3 1010 1672 69 14 0 chr9 55756371 55756587 -68319585 - Lx3A LINE L1 -1122 5859 5641 3 1010 580 75 0 12 chr9 55756588 55756669 -68319503 - 4.5SRNA scRNA scRNA -1 93 14 3 1010 782 204 131 0 chr9 55757758 55757949 -68318223 + B3 SINE B2 1 216 0 3 1010 21 0 0 0 chr9 55758656 55758677 -68317495 + AT_rich Low_complexity Low_complexity 1 21 0 3 1010 459 333 26 13 chr9 55758680 55758832 -68317340 + RSINE1 SINE B4 3 156 -9 3 1010 260 329 0 0 chr9 55760205 55760281 -68315891 + Lx8 LINE L1 7133 7208 -265 3 1010 653 270 14 0 chr9 55760305 55760453 -68315719 - RSINE1 SINE B4 -13 152 3 3 1010 312 252 0 139 chr9 55760543 55760658 -68315514 + MLT1A0 LTR MaLR 267 365 0 3 1010 533 288 95 40 chr9 55763148 55763452 -68312720 + L1MC4 LINE L1 6873 7193 -849 3 1010 296 274 138 28 chr9 55763632 55763741 -68312431 - PB1 SINE Alu -2 125 5 3 1010 717 316 105 5 chr9 55764033 55764239 -68311933 + B4A SINE B4 1 227 -65 3 1010 482 309 11 90 chr9 55764239 55764417 -68311755 + RSINE1 SINE B4 2 165 0 3 1010 567 261 97 87 chr9 55764621 55764827 -68311345 + B4A SINE B4 43 250 -42 3 1010 387 0 0 0 chr9 55764828 55764871 -68311301 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1010 249 250 42 0 chr9 55764913 55764985 -68311187 + B4A SINE B4 217 291 -1 3 1010 222 261 141 50 chr9 55765309 55765430 -68310742 - L2 LINE L2 -1633 1786 1655 3 1010 207 0 0 0 chr9 55766264 55766287 -68309885 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1010 1161 30 0 0 chr9 55766287 55766422 -68309750 - B1_Mus2 SINE Alu -10 137 3 3 1010 443 280 110 14 chr9 55767147 55767292 -68308880 + RSINE1 SINE B4 5 163 -2 3 1010 545 232 164 21 chr9 55767775 55767964 -68308208 - B3 SINE B2 0 216 1 3 1010 531 290 161 0 chr9 55768143 55768329 -68307843 + B3 SINE B2 1 216 0 3 1010 186 103 0 0 chr9 55768490 55768519 -68307653 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1010 236 350 0 0 chr9 55768639 55768719 -68307453 + ID4_ SINE ID 3 82 -1 3 1010 763 289 130 10 chr9 55768767 55769159 -68307013 + L1MB7 LINE L1 5665 6103 -81 3 1010 500 232 10 0 chr9 55769653 55769752 -68306420 + PB1 SINE Alu 24 123 -4 3 1010 510 221 39 0 chr9 55769951 55770055 -68306117 - PB1D9 SINE Alu -10 110 3 3 1010 402 310 30 0 chr9 55770060 55770160 -68306012 - PB1D10 SINE Alu 0 117 15 3 1010 370 230 77 56 chr9 55770206 55770349 -68305823 + L1M4c LINE L1 2154 2299 -4085 3 1010 743 259 75 164 chr9 55770406 55770490 -68305682 + L1M4c LINE L1 2382 2476 -3903 3 1010 3336 69 100 0 chr9 55770490 55770951 -68305221 + Lx3_Mus LINE L1 6501 7007 -2 3 1010 938 257 72 99 chr9 55770951 55771679 -68304493 + L1M4c LINE L1 2477 3122 -3254 3 1010 1087 86 0 0 chr9 55771720 55771860 -68304312 + B1_Mus1 SINE Alu 1 140 -8 3 1010 205 167 20 40 chr9 55771880 55771930 -68304242 + GA-rich Low_complexity Low_complexity 4 52 0 3 1010 235 0 57 57 chr9 55772019 55772072 -68304100 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 3 1010 1194 43 0 0 chr9 55772074 55772214 -68303958 - B1_Mm SINE Alu -6 141 2 3 1010 7681 55 8 20 chr9 55772243 55773396 -68302776 + L1_Mus2 LINE L1 5427 6566 0 3 1010 312 316 14 81 chr9 55773446 55773594 -68302578 + RMER4A LTR ERVK 25 162 -304 3 1010 186 103 0 0 chr9 55773858 55773887 -68302285 + (GGGAGA)n Simple_repeat Simple_repeat 6 34 0 3 1010 1156 162 36 7 chr9 55774031 55774229 -68301943 - MTD LTR MaLR -122 297 64 3 1010 954 155 99 14 chr9 55774229 55774449 -68301723 + Lx5 LINE L1 6776 7049 -9 3 1010 1284 89 0 0 chr9 55774460 55774640 -68301532 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1010 392 195 24 12 chr9 55774648 55774721 -68301451 - MTD LTR MaLR -299 120 47 4 1010 880 124 27 14 chr9 55774721 55774868 -68301304 - URR1A DNA MER1_type 0 226 78 4 1010 215 31 31 0 chr9 55774930 55774962 -68301210 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 4 1010 253 226 0 19 chr9 55775040 55775094 -68301078 + B2_Mm2 SINE B2 1 53 -142 4 1010 1284 267 83 8 chr9 55775098 55775577 -68300595 + L1MA8 LINE L1 3300 3814 -2329 4 1010 1541 243 97 40 chr9 55775583 55776184 -68299988 + L1MA8 LINE L1 5513 6147 -144 4 1010 421 296 45 56 chr9 55776184 55776363 -68299809 + MTD LTR MaLR 1 177 -242 4 1010 535 241 58 19 chr9 55776371 55776578 -68299594 + L1ME2 LINE L1 5737 5951 -213 4 1010 2812 162 2 50 chr9 55776603 55777128 -68299044 - L1_Mm LINE L1 -190 5693 5194 4 1010 444 81 0 122 chr9 55777156 55777254 -68298918 + RMER3D-int LTR ERVK 2755 2840 -2 4 1010 2334 154 118 37 chr9 55777256 55777775 -68298397 + RLTR31_Mm LTR ERVK 1 561 0 4 1010 4157 149 54 19 chr9 55777779 55778463 -68297709 + Lx2B LINE L1 6286 6993 -7 4 1010 29 0 0 0 chr9 55778463 55778492 -68297680 + AT_rich Low_complexity Low_complexity 1 29 0 4 1010 1123 211 14 19 chr9 55778558 55778771 -68297401 + B3 SINE B2 2 213 -3 4 1010 231 390 70 25 chr9 55779562 55779762 -68296410 + MIRb SINE MIR 19 227 -41 4 1010 321 260 52 0 chr9 55780011 55780088 -68296084 + PB1D10 SINE Alu 35 115 -2 4 1010 1637 289 55 14 chr9 55780333 55780971 -68295201 + L1MB7 LINE L1 5344 6007 -177 4 1010 1183 271 51 22 chr9 55780945 55781300 -68294872 + Lx8 LINE L1 7013 7377 -96 4 1010 779 301 13 83 chr9 55781821 55782133 -68294039 + B4 SINE B4 1 290 -2 4 1010 1163 241 137 4 chr9 55782249 55782589 -68293583 - MTD LTR MaLR -14 405 1 4 1010 745 230 12 112 chr9 55782762 55783002 -68293170 - B3 SINE B2 0 216 1 4 1010 949 230 112 61 chr9 55783246 55783310 -68292862 - B4A SINE B4 0 292 220 4 1010 216 0 0 0 chr9 55783310 55783334 -68292838 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1010 949 230 112 61 chr9 55783334 55783547 -68292625 - B4A SINE B4 -73 219 2 4 1010 703 258 27 21 chr9 55783582 55783768 -68292404 - B4A SINE B4 -105 187 1 4 1010 1170 226 68 43 chr9 55784112 55784464 -68291708 + MLT1A0 LTR MaLR 1 361 -4 4 1010 233 257 56 14 chr9 55784873 55784944 -68291228 + MIRc SINE MIR 70 143 -125 4 1010 234 0 0 0 chr9 55785395 55785421 -68290751 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1010 220 95 0 67 chr9 55785926 55785971 -68290201 + (CGGGG)n Simple_repeat Simple_repeat 3 44 0 4 1010 2788 122 57 7 chr9 55787347 55787786 -68288386 - RMER6B LTR ERVK 0 461 1 4 1010 3102 227 22 34 chr9 55787791 55787909 -68288263 + Lx6 LINE L1 6793 6895 -565 4 1010 369 0 0 0 chr9 55787909 55787950 -68288222 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1010 3102 227 22 34 chr9 55787950 55788507 -68287665 + Lx6 LINE L1 6896 7460 0 4 1010 1436 234 96 40 chr9 55788613 55788987 -68287185 - MTC LTR MaLR -26 395 1 4 1010 188 417 8 24 chr9 55789603 55789726 -68286446 - MER5A DNA MER1_type 0 189 69 4 1010 1144 126 7 8 chr9 55790659 55790884 -68285288 + Lx4B LINE L1 6411 6602 -448 4 1010 204 40 0 0 chr9 55791042 55791067 -68285105 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 1010 4076 124 15 12 chr9 55791067 55791662 -68284510 - Lx4B LINE L1 -19 7039 6443 4 1010 338 298 47 28 chr9 55791663 55791770 -68284402 + B4A SINE B4 43 151 -141 4 1010 231 103 0 0 chr9 55791885 55791924 -68284248 + (TCTCTG)n Simple_repeat Simple_repeat 3 41 0 4 1010 2278 103 48 13 chr9 55792609 55792925 -68283247 + ORR1A2 LTR MaLR 1 327 0 4 1010 937 126 13 40 chr9 55793069 55793218 -68282954 + B1_Mur4 SINE Alu 5 149 -1 4 1010 1063 105 0 0 chr9 55793315 55793458 -68282714 + B1_Mus1 SINE Alu 6 148 0 4 1010 1298 67 0 6 chr9 55793468 55793647 -68282525 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1010 301 136 15 15 chr9 55793651 55793718 -68282454 + GA-rich Low_complexity Low_complexity 4 70 0 4 1010 1700 240 16 142 chr9 55793799 55794803 -68281369 + RMER1B Other Other 65 784 -558 4 1010 410 238 47 47 chr9 55794930 55795058 -68281114 + B1_Mur1 SINE Alu 21 148 -1 4 1010 835 112 41 34 chr9 55795087 55795251 -68280921 + B2_Mm1a SINE B2 36 193 0 4 1010 292 304 184 61 chr9 55795271 55795467 -68280705 - LTR16C LTR ERVL -57 511 211 4 1010 351 274 32 0 chr9 55795564 55795659 -68280513 + LTR33A LTR ERVL 46 143 -377 4 1010 311 113 0 19 chr9 55795689 55795743 -68280429 + (TCCC)n Simple_repeat Simple_repeat 2 54 0 4 1010 216 67 0 0 chr9 55795960 55795990 -68280182 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1010 389 270 97 5 chr9 55796340 55796526 -68279646 + MER33 DNA MER1_type 52 254 -70 4 1010 255 114 0 0 chr9 55796549 55796593 -68279579 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1010 933 294 35 19 chr9 55796593 55796850 -68279322 - B4A SINE B4 -26 266 6 4 1010 267 325 0 0 chr9 55796842 55796925 -68279247 + MER33 DNA MER1_type 242 324 0 4 1010 243 232 203 0 chr9 55796990 55797059 -68279113 + MLT1D LTR MaLR 2 84 -421 4 1010 379 350 47 51 chr9 55797162 55797376 -68278796 + MLT1D LTR MaLR 221 433 -72 4 1010 888 60 0 0 chr9 55797382 55797498 -68278674 + B1_Mm SINE Alu 31 146 -1 4 1010 186 43 0 0 chr9 55801615 55801638 -68274534 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1010 486 33 0 0 chr9 55801810 55801870 -68274302 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1010 1180 230 5 0 chr9 55801924 55802137 -68274035 - B3 SINE B2 -1 215 2 4 1010 21 0 0 0 chr9 55802148 55802169 -68274003 + AT_rich Low_complexity Low_complexity 1 21 0 4 1010 15691 66 1 1 chr9 55802283 55804280 -68271892 + L1Md_F2 LINE L1 3590 5586 -297 4 1010 8452 55 2 2 chr9 55804281 55805276 -68270896 + L1Md_F2 LINE L1 5588 6582 0 4 1010 30866 67 20 1 chr9 55805276 55805785 -68270387 + L1Md_F3 LINE L1 1414 1967 -3916 4 1010 228 35 0 0 chr9 55805785 55805814 -68270358 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1010 30866 67 20 1 chr9 55805814 55809402 -68266770 + L1Md_F3 LINE L1 1968 5588 -295 4 1010 8218 57 8 1 chr9 55809402 55810377 -68265795 + L1Md_F3 LINE L1 5589 6570 -14 4 1010 189 107 0 0 chr9 55810484 55810512 -68265660 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1010 37751 32 2 7 chr9 55814098 55819486 -68256686 + L1Md_T LINE L1 229 5586 -297 4 1010 8865 39 0 0 chr9 55819486 55820482 -68255690 + L1Md_T LINE L1 5587 6582 0 4 1010 741 317 40 83 chr9 55820638 55821010 -68255162 + ORR1E LTR MaLR 2 357 -2 4 1010 2089 163 3 0 chr9 55821134 55821459 -68254713 + ORR1A3 LTR MaLR 1 326 0 4 1010 726 247 32 37 chr9 55822082 55822153 -68254019 + B3 SINE B2 8 77 -139 4 1010 2435 202 5 76 chr9 55822153 55822720 -68253452 + RLTR11A2 LTR ERVK 1 527 0 4 1010 726 247 32 37 chr9 55822720 55822837 -68253335 + B3 SINE B2 78 195 -21 4 1010 419 356 46 31 chr9 55824742 55824936 -68251236 - ID_B1 SINE B4 -14 210 14 4 1010 720 103 0 0 chr9 55824939 55825046 -68251126 + (CAGAA)n Simple_repeat Simple_repeat 1 107 0 4 1010 2595 197 17 17 chr9 55826681 55827203 -68248969 + RLTR12B LTR ERVK 3 524 -4 4 1010 605 268 0 74 chr9 55827592 55827741 -68248431 - RSINE1 SINE B4 -25 140 3 4 1010 383 276 16 49 chr9 55828006 55828128 -68248044 + MTE2b LTR MaLR 248 365 -14 4 1010 215 79 0 26 chr9 55829620 55829659 -68246513 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1010 288 330 97 0 chr9 55831352 55831455 -68244717 + MTD LTR MaLR 7 119 -260 4 1010 411 352 18 57 chr9 55831389 55831669 -68244503 + MT2A LTR ERVL 52 320 -213 4 1010 387 0 0 0 chr9 55831725 55831768 -68244404 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1010 712 251 18 0 chr9 55831917 55832080 -68244092 + MTD LTR MaLR 220 385 -34 4 1010 261 0 0 0 chr9 55832292 55832321 -68243851 + (TTA)n Simple_repeat Simple_repeat 3 31 0 4 1010 430 316 25 31 chr9 55832339 55832502 -68243670 - RSINE1 SINE B4 0 165 4 4 1010 4688 63 0 0 chr9 55833622 55834205 -68241967 - L1Md_F2 LINE L1 -14 6568 5986 4 1010 186 43 0 0 chr9 55834761 55834784 -68241388 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1010 192 40 0 0 chr9 55835310 55835335 -68240837 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 4 126 817 228 68 0 chr9 55836606 55836825 -68239347 + Lx7 LINE L1 7065 7298 -398 4 1011 317 256 62 8 chr9 55836994 55837124 -68239048 + Lx7 LINE L1 7514 7650 -46 4 1011 246 265 12 12 chr9 55837408 55837492 -68238680 - MLT1A1 LTR MaLR 0 408 325 4 1011 339 339 9 18 chr9 55838406 55838517 -68237655 - RSINE1 SINE B4 -3 162 53 4 1011 325 338 9 69 chr9 55838805 55839021 -68237151 - Lx9 LINE L1 -181 7463 7261 4 1011 248 189 63 63 chr9 55841753 55841832 -68234340 - MLT1A1 LTR MaLR 0 408 330 4 1011 283 302 8 101 chr9 55842929 55843058 -68233114 - RSINE1 SINE B4 0 165 49 4 1011 252 59 0 0 chr9 55843070 55843104 -68233068 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1011 339 313 0 51 chr9 55843115 55843253 -68232919 - B3 SINE B2 -5 211 81 4 1011 7046 78 1 7 chr9 55843253 55844473 -68231699 + L1_Mus2 LINE L1 5355 6566 0 4 1011 38 22 0 0 chr9 55844508 55844553 -68231619 + AT_rich Low_complexity Low_complexity 1 45 0 4 1011 481 234 101 25 chr9 55845265 55845423 -68230749 + ORR1D2-int LTR MaLR 1072 1241 -17 4 1011 973 281 93 15 chr9 55845457 55845800 -68230372 + ORR1D2 LTR MaLR 1 370 0 4 1011 1049 293 128 48 chr9 55845800 55846310 -68229862 + ORR1D2-int LTR MaLR 1 561 -697 4 1011 180 0 0 0 chr9 55846310 55846330 -68229842 + (GTGTG)n Simple_repeat Simple_repeat 5 24 0 4 1011 1049 310 131 26 chr9 55846330 55846856 -68229316 + ORR1D2-int LTR MaLR 562 1247 -11 4 1011 1167 303 39 14 chr9 55846892 55847247 -68228925 + MTD LTR MaLR 42 405 -14 4 1011 563 324 57 46 chr9 55848104 55848470 -68227702 + MTD LTR MaLR 1 370 0 4 1011 306 270 199 10 chr9 55848470 55848676 -68227496 + MTD-int LTR MaLR 1 245 -1013 4 1011 621 257 232 55 chr9 55848665 55849065 -68227107 + MTD-int LTR MaLR 784 1254 -4 4 1011 1095 301 95 16 chr9 55849069 55849457 -68226715 + MTD LTR MaLR 1 419 0 4 1011 969 303 30 55 chr9 55849721 55850088 -68226084 + ORR1E LTR MaLR 1 358 -1 4 1011 22 0 0 0 chr9 55851566 55851588 -68224584 + AT_rich Low_complexity Low_complexity 1 22 0 4 1011 381 102 0 0 chr9 55853521 55853580 -68222592 + (TTG)n Simple_repeat Simple_repeat 2 60 0 4 1011 526 350 39 24 chr9 55853580 55853785 -68222387 - ID_B1 SINE B4 -13 211 4 4 1011 1254 138 0 5 chr9 55854175 55854371 -68221801 + B2_Mm2 SINE B2 1 195 0 4 1011 1347 72 0 0 chr9 55854382 55854562 -68221610 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1011 339 319 98 14 chr9 55854569 55854712 -68221460 + HAL1-3A_ME LINE L1 2284 2438 -420 5 1011 204 103 0 0 chr9 55854712 55854741 -68221431 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 5 1011 314 42 0 41 chr9 55854741 55854790 -68221382 + (GAAAA)n Simple_repeat Simple_repeat 3 49 0 5 1011 1321 226 82 43 chr9 55855444 55855907 -68220265 + RMER1C Other Other 859 1339 -3 5 1011 1896 147 16 84 chr9 55856171 55856551 -68219621 - ORR1B1 LTR MaLR 0 394 41 5 1011 314 227 30 15 chr9 55856717 55856784 -68219388 - B3A SINE B2 -130 68 1 5 1011 190 196 71 0 chr9 55857430 55857486 -68218686 - L3 LINE CR1 -2143 2346 2287 5 1011 307 185 70 0 chr9 55858065 55858162 -68218010 + MT2A LTR ERVL 443 556 0 5 1011 255 282 89 13 chr9 55858538 55858617 -68217555 + RSINE1 SINE B4 4 88 -77 5 1011 324 0 0 0 chr9 55858695 55858731 -68217441 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1011 878 268 45 110 chr9 55858807 55859271 -68216901 + RLTR20B3 LTR ERVK 40 490 -88 5 1011 426 39 0 0 chr9 55859271 55859323 -68216849 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1011 878 285 67 114 chr9 55859323 55859415 -68216757 + RLTR20B3 LTR ERVK 474 577 -1 5 1011 641 57 0 0 chr9 55859527 55859615 -68216557 + L1_Mus2 LINE L1 6472 6559 -7 5 1011 16345 111 10 6 chr9 55859624 55862370 -68213802 + L1_Mur1 LINE L1 1416 4172 -1714 5 1011 18309 117 72 7 chr9 55862373 55866827 -68209345 + L1Md_A LINE L1 219 5580 -297 5 1011 7756 67 0 0 chr9 55866827 55867818 -68208354 + L1Md_F2 LINE L1 5587 6577 -5 5 1011 11188 205 14 169 chr9 55867818 55867851 -68208321 + L1Md_A LINE L1 4149 4158 -1722 5 1011 1247 84 0 6 chr9 55867851 55868030 -68208142 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 5 1011 11188 205 14 169 chr9 55868030 55869121 -68207051 + L1Md_A LINE L1 4159 5248 -632 5 1011 24 0 0 0 chr9 55870390 55870414 -68205758 + AT_rich Low_complexity Low_complexity 1 24 0 5 1011 8620 121 7 8 chr9 55870414 55872186 -68203986 + Lx3_Mus LINE L1 5246 7009 0 5 1011 525 68 0 0 chr9 55872338 55872412 -68203760 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 5 1011 438 225 89 44 chr9 55872871 55873006 -68203166 + B1_Mur1 SINE Alu 8 148 -1 5 1011 303 291 89 60 chr9 55873134 55873302 -68202870 - LTR16C LTR ERVL -106 383 211 5 1011 554 349 46 77 chr9 55873400 55873878 -68202294 + LTR33A LTR ERVL 46 508 -12 5 1011 365 281 97 5 chr9 55874142 55874328 -68201844 + MER33 DNA MER1_type 52 254 -70 5 1011 348 77 0 0 chr9 55874349 55874401 -68201771 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1011 889 276 43 27 chr9 55874401 55874658 -68201514 - B4A SINE B4 -26 266 6 5 1011 304 256 12 12 chr9 55874650 55874733 -68201439 + MER33 DNA MER1_type 242 324 0 5 1011 231 233 150 0 chr9 55874798 55874858 -68201314 + MLT1D LTR MaLR 2 70 -435 5 1011 372 368 42 76 chr9 55874919 55875181 -68200991 + MLT1D LTR MaLR 181 433 -72 5 1011 435 19 0 0 chr9 55879576 55879628 -68196544 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1011 1073 206 24 9 chr9 55879682 55879893 -68196279 - B3 SINE B2 -1 215 2 5 1011 29 0 0 0 chr9 55879904 55879933 -68196239 + AT_rich Low_complexity Low_complexity 1 29 0 5 1011 358 176 52 43 chr9 55880103 55880182 -68195990 + ORR1A4 LTR MaLR 1 66 -328 5 1011 759 210 31 27 chr9 55880182 55880411 -68195761 + ORR1A4 LTR MaLR 1 244 -150 5 1011 701 230 101 0 chr9 55880391 55880539 -68195633 + B3 SINE B2 54 216 0 5 1011 39 68 0 0 chr9 55880542 55880616 -68195556 + AT_rich Low_complexity Low_complexity 1 74 0 5 1011 831 282 70 48 chr9 55880705 55881160 -68195012 + L1MA4 LINE L1 5545 6009 -291 5 1011 331 351 22 7 chr9 55881173 55881308 -68194864 - RMER15 LTR ERVL -17 558 422 5 1011 1694 16 0 0 chr9 55881850 55882040 -68194132 + B2_Mm1a SINE B2 2 191 -2 5 1011 288 144 79 45 chr9 55882100 55882166 -68194006 + PB1 SINE Alu 62 127 0 5 1011 1259 20 0 13 chr9 55882169 55882318 -68193854 + B1_Mm SINE Alu 1 147 0 5 1011 615 290 47 56 chr9 55882593 55882914 -68193258 + Lx8 LINE L1 7154 7471 -2 5 1011 613 293 82 49 chr9 55883080 55883411 -68192761 + MLT1A1 LTR MaLR 5 400 -8 5 1011 218 208 0 20 chr9 55883412 55883461 -68192711 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1011 189 121 0 0 chr9 55884781 55884814 -68191358 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1011 326 187 33 11 chr9 55885099 55885191 -68190981 - Lx9 LINE L1 -7 7637 7544 5 1011 231 286 52 62 chr9 55885322 55885419 -68190753 - PB1 SINE Alu -18 109 14 5 1011 343 253 36 60 chr9 55885512 55885596 -68190576 + B1F SINE Alu 3 84 -65 5 1011 1134 82 7 0 chr9 55885851 55885998 -68190174 - B1_Mus1 SINE Alu 0 148 1 5 1011 203 0 37 0 chr9 55886039 55886066 -68190106 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 5 1011 252 336 47 40 chr9 55886112 55886261 -68189911 - Charlie4z DNA MER1_type 0 167 18 5 1011 254 50 25 0 chr9 55886485 55886525 -68189647 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1011 5183 176 11 73 chr9 55886865 55887091 -68189081 + L1_Mur2 LINE L1 4764 4917 -960 5 1011 1260 27 0 0 chr9 55887091 55887237 -68188935 - B1_Mm SINE Alu 0 147 2 5 1011 8025 73 2 1 chr9 55887237 55888880 -68187292 + L1_Mus1 LINE L1 4923 6567 0 5 1011 217 191 222 0 chr9 55891916 55891979 -68184193 + MIRc SINE MIR 82 158 -110 5 1011 513 188 121 30 chr9 55892458 55892590 -68183582 + B1F2 SINE Alu 6 149 0 5 1011 22 56 0 0 chr9 55892619 55892655 -68183517 + AT_rich Low_complexity Low_complexity 1 36 0 5 1011 22 35 0 0 chr9 55892845 55892874 -68183298 + AT_rich Low_complexity Low_complexity 1 29 0 5 1011 327 248 108 19 chr9 55893543 55893728 -68182444 - B4A SINE B4 -9 215 7 5 1011 382 212 24 24 chr9 55893758 55893840 -68182332 - ID4 SINE ID 0 83 2 5 1011 831 202 149 47 chr9 55893845 55894120 -68182052 - L1MB2 LINE L1 -47 6124 5822 5 1011 969 133 14 0 chr9 55894157 55894300 -68181872 + B1_Mus1 SINE Alu 4 148 0 5 1011 198 91 0 0 chr9 55894340 55894373 -68181799 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 5 1011 418 281 57 7 chr9 55894521 55894661 -68181511 - L1MB2 LINE L1 -471 5712 5566 5 1011 876 171 0 7 chr9 55894773 55894920 -68181252 - B1_Mus1 SINE Alu 0 148 3 5 1011 616 196 26 77 chr9 55895303 55895458 -68180714 - B1_Mur2 SINE Alu -1 148 2 5 1011 256 172 108 10 chr9 55895520 55895627 -68180545 + MIRc SINE MIR 37 180 -96 5 1011 647 272 6 30 chr9 55895763 55895930 -68180242 + RSINE1 SINE B4 3 165 0 5 1011 873 258 10 0 chr9 55895965 55896159 -68180013 + B3 SINE B2 7 202 -14 5 1011 673 250 96 0 chr9 55896885 55897073 -68179099 + B3 SINE B2 1 206 -10 5 1011 482 234 27 0 chr9 55897334 55897445 -68178727 + PB1D9 SINE Alu 1 114 -6 5 1011 990 112 209 0 chr9 55897964 55898151 -68178021 - URR1A DNA MER1_type 0 226 1 5 1011 25 31 0 0 chr9 55898225 55898257 -68177915 + AT_rich Low_complexity Low_complexity 1 32 0 5 1011 1039 173 73 0 chr9 55898313 55898504 -68177668 - B3 SINE B2 -11 205 1 5 1011 491 171 31 16 chr9 55898504 55898603 -68177569 - B1F1 SINE Alu -58 91 2 5 1011 454 230 0 0 chr9 55898516 55898616 -68177556 - ID_B1 SINE B4 -55 169 70 5 1011 200 34 0 33 chr9 55899514 55899544 -68176628 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 5 1011 260 252 113 66 chr9 55899558 55899664 -68176508 - B1_Mur1 SINE Alu -7 142 32 5 1011 420 75 327 36 chr9 55899705 55899815 -68176357 - B2_Mm2 SINE B2 -7 188 47 5 1011 1098 68 106 0 chr9 55899862 55900023 -68176149 - B2_Mm1t SINE B2 -14 179 2 5 1011 425 265 25 17 chr9 55900175 55900186 -68175986 - PB1D7 SINE Alu 0 120 111 5 1011 339 25 0 0 chr9 55900186 55900226 -68175946 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 5 1011 425 265 25 17 chr9 55900226 55900333 -68175839 - PB1D7 SINE Alu -10 110 1 5 1011 273 57 0 0 chr9 55900673 55900708 -68175464 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1011 387 280 28 9 chr9 55902339 55902447 -68173725 - B1F SINE Alu -39 110 1 5 1011 226 265 27 81 chr9 55902350 55902461 -68173711 + YREP_Mm Unknown Unknown 222 326 -1486 5 1011 25 0 0 0 chr9 55902617 55902642 -68173530 + AT_rich Low_complexity Low_complexity 1 25 0 5 1011 524 204 211 99 chr9 55903359 55903663 -68172509 - Lx9 LINE L1 -20 7624 7287 5 1011 423 0 0 0 chr9 55904323 55904370 -68171802 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1011 687 260 90 0 chr9 55904574 55904774 -68171398 + ID_B1 SINE B4 2 219 -5 5 1011 562 67 52 104 chr9 55905012 55905146 -68171026 + L1_Mus3 LINE L1 6512 6638 0 5 1011 22 56 0 0 chr9 55906847 55906883 -68169289 + AT_rich Low_complexity Low_complexity 1 36 0 5 1011 584 212 229 6 chr9 55908464 55908630 -68167542 + ID_B1 SINE B4 21 223 -1 5 1011 183 156 0 0 chr9 55908637 55908669 -68167503 + GA-rich Low_complexity Low_complexity 3 34 0 5 1011 183 42 0 0 chr9 55908667 55908691 -68167481 + (CAG)n Simple_repeat Simple_repeat 2 25 0 5 1011 415 269 64 4 chr9 55908725 55908862 -68167310 - B1F2 SINE Alu -10 139 1 5 1011 3387 213 89 11 chr9 55909596 55910690 -68165482 - RMER1B Other Other -2 1064 86 5 1011 339 25 0 0 chr9 55910690 55910730 -68165442 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1011 262 262 159 0 chr9 55910736 55910843 -68165329 + MER20B DNA MER1_type 319 442 -341 5 1011 501 266 138 31 chr9 55911521 55911781 -68164391 + B4A SINE B4 4 291 -1 5 1011 261 0 0 0 chr9 55911784 55911813 -68164359 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1011 211 200 22 0 chr9 55912677 55912722 -68163450 + (CACCC)n Simple_repeat Simple_repeat 5 50 0 5 1011 218 245 0 19 chr9 55912756 55912810 -68163362 + MIR3 SINE MIR 143 195 -13 5 1011 982 116 10 0 chr9 55913297 55913502 -68162670 + (TCCC)n Simple_repeat Simple_repeat 1 207 0 6 1011 2291 117 6 0 chr9 55913649 55913974 -68162198 + ORR1A2 LTR MaLR 1 327 0 6 1011 231 242 74 83 chr9 55914286 55914394 -68161778 + ORR1B1 LTR MaLR 282 388 -6 6 1011 213 288 133 9 chr9 55914637 55914742 -68161430 + L2a LINE L2 2999 3116 -310 6 1011 989 212 77 91 chr9 55914761 55915114 -68161058 + RLTR20B3 LTR ERVK 21 368 -209 6 1011 761 139 0 0 chr9 55915119 55915241 -68160931 - MTB_Mm LTR MaLR -270 137 16 6 1011 745 164 62 12 chr9 55915246 55915407 -68160765 + MTC LTR MaLR 253 421 0 6 1011 1116 43 0 0 chr9 55916154 55916292 -68159880 + (GGAA)n Simple_repeat Simple_repeat 1 138 0 6 1011 432 131 0 10 chr9 55916296 55916396 -68159776 + MT2A LTR ERVL 435 533 0 6 1011 462 268 46 40 chr9 55916396 55916539 -68159633 + RMER15 LTR ERVL 432 575 0 6 1011 1138 134 0 259 chr9 55916544 55916780 -68159392 + ORR1B1 LTR MaLR 1 208 -186 6 1011 838 200 83 6 chr9 55916773 55916954 -68159218 + ORR1B1 LTR MaLR 168 362 -57 6 1011 2021 101 47 15 chr9 55916961 55917304 -68158868 + ORR1B1 LTR MaLR 41 394 0 6 1011 30 45 0 0 chr9 55917490 55917534 -68158638 + AT_rich Low_complexity Low_complexity 1 44 0 6 1011 27 0 0 0 chr9 55917619 55917646 -68158526 + AT_rich Low_complexity Low_complexity 1 27 0 6 1011 239 279 59 0 chr9 55918284 55918352 -68157820 + ID4 SINE ID 2 73 -10 6 1011 22 0 0 0 chr9 55918429 55918451 -68157721 + AT_rich Low_complexity Low_complexity 1 22 0 6 1011 369 0 0 0 chr9 55918464 55918505 -68157667 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 1011 473 245 28 19 chr9 55918505 55918613 -68157559 - PB1D9 SINE Alu -10 110 2 6 1011 215 306 20 39 chr9 55918969 55919071 -68157101 + MER5A DNA MER1_type 1 100 -89 6 1011 653 12 25 0 chr9 55919772 55919853 -68156319 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 6 1011 228 253 26 26 chr9 55919916 55919993 -68156179 - B4 SINE B4 -214 78 2 6 1011 1365 132 4 197 chr9 55921302 55921401 -68154771 + RMER17C LTR ERVK 1 82 -328 6 1011 1088 102 0 0 chr9 55921401 55921548 -68154624 + B1_Mus1 SINE Alu 2 148 0 6 1011 1365 132 4 197 chr9 55921548 55921910 -68154262 + RMER17C LTR ERVK 83 373 -37 6 1011 24 0 0 0 chr9 55922035 55922059 -68154113 + AT_rich Low_complexity Low_complexity 1 24 0 6 1011 871 163 160 16 chr9 55922078 55922265 -68153907 + B3 SINE B2 3 216 0 6 1011 721 121 186 0 chr9 55923647 55923771 -68152401 - B1_Mus1 SINE Alu -1 147 1 6 1011 360 0 0 0 chr9 55924631 55924671 -68151501 + (TTG)n Simple_repeat Simple_repeat 2 41 0 6 1011 243 247 50 38 chr9 55925277 55925357 -68150815 + PB1D10 SINE Alu 36 116 -1 6 1011 1181 101 73 6 chr9 55925362 55925541 -68150631 + B2_Mm2 SINE B2 1 191 -4 6 1011 325 324 112 19 chr9 55925894 55926152 -68150020 - L1ME4a LINE L1 -202 5922 5641 6 1011 208 338 12 12 chr9 55926912 55926993 -68149179 + MIR SINE MIR 61 141 -67 6 1011 943 107 0 62 chr9 55927833 55927993 -68148179 + B1_Mur4 SINE Alu 1 150 0 6 1011 591 15 0 0 chr9 55928144 55928212 -68147960 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 1011 261 0 0 0 chr9 55928212 55928240 -68147932 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1011 969 245 29 93 chr9 55928272 55928583 -68147589 - B4A SINE B4 -1 291 1 6 1011 251 111 73 12 chr9 55928697 55928779 -68147393 + C-rich Low_complexity Low_complexity 2 88 0 6 1011 6721 39 1 7 chr9 55928977 55929783 -68146389 - L1Md_F2 LINE L1 -13 6569 5769 6 1011 3393 30 5 0 chr9 55929814 55930208 -68145964 + MTA_Mm LTR MaLR 1 396 0 6 1011 546 91 0 0 chr9 55930387 55930464 -68145708 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 6 1011 799 91 70 70 chr9 55930465 55930607 -68145565 - B1_Mur4 SINE Alu -4 146 5 6 1011 663 325 22 35 chr9 55930607 55930974 -68145198 + L1MC4 LINE L1 7268 7629 -413 6 1011 204 265 0 29 chr9 55931055 55931125 -68145047 + CT-rich Low_complexity Low_complexity 4 71 0 6 1011 2194 72 13 0 chr9 55931381 55931688 -68144484 - ORR1A2 LTR MaLR -8 319 9 6 1011 352 252 126 0 chr9 55931764 55931867 -68144305 + B3 SINE B2 101 216 0 6 1011 224 196 0 38 chr9 55932687 55932740 -68143432 + MIR SINE MIR 93 143 -65 6 1011 244 340 58 29 chr9 55934520 55934623 -68141549 + MER45C DNA Tip100 9 114 -839 6 1011 743 207 7 22 chr9 55934638 55934776 -68141396 + B1_Mur3 SINE Alu 5 140 -9 6 1011 536 329 6 30 chr9 55934828 55934994 -68141178 - RSINE1 SINE B4 0 165 4 6 1011 788 357 135 17 chr9 55935063 55935425 -68140747 + MER45C DNA Tip100 273 677 -276 6 1011 551 234 150 38 chr9 55936668 55936828 -68139344 + B3A SINE B2 21 198 0 6 1011 193 299 82 41 chr9 55937219 55937341 -68138831 - MIRb SINE MIR -125 143 17 6 1011 235 194 52 31 chr9 55937785 55937881 -68138291 + (CCTG)n Simple_repeat Simple_repeat 3 100 0 6 1011 262 152 0 0 chr9 55938658 55938716 -68137456 + MIRc SINE MIR 92 153 -115 6 1011 240 287 46 65 chr9 55939836 55939944 -68136228 + PB1D10 SINE Alu 2 107 -10 6 1011 1277 154 38 14 chr9 55940030 55940241 -68135931 - B3 SINE B2 0 216 1 6 1011 301 180 0 0 chr9 55940290 55940340 -68135832 + Tigger15a DNA TcMar 23 72 -643 6 1011 325 253 115 90 chr9 55940514 55940792 -68135380 - B4A SINE B4 -6 286 2 6 1011 283 286 108 28 chr9 55941109 55941285 -68134887 + RMER15 LTR ERVL 384 573 -2 6 1011 479 278 38 0 chr9 55941431 55941564 -68134608 + B1F1 SINE Alu 2 139 -10 6 1011 405 0 0 0 chr9 55942041 55942086 -68134086 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1011 270 0 0 0 chr9 55942086 55942115 -68134057 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1011 752 193 0 7 chr9 55942151 55942292 -68133880 - RSINE1 SINE B4 -24 141 2 6 1011 21 0 0 0 chr9 55942992 55943013 -68133159 + AT_rich Low_complexity Low_complexity 1 21 0 6 1011 453 236 55 0 chr9 55943460 55943570 -68132602 + B1F SINE Alu 34 149 0 6 1011 267 26 0 26 chr9 55943870 55943909 -68132263 - L1MB2 LINE L1 -40 6131 6094 6 1011 503 118 12 0 chr9 55945138 55945223 -68130949 + (TCCC)n Simple_repeat Simple_repeat 2 87 0 6 1011 434 34 34 0 chr9 55945220 55945279 -68130893 + (TTTCC)n Simple_repeat Simple_repeat 3 63 0 6 1011 478 215 9 27 chr9 55946296 55946406 -68129766 + PB1D10 SINE Alu 5 112 -5 6 1011 855 214 61 19 chr9 55946431 55946645 -68129527 + B4A SINE B4 2 224 -68 6 1011 297 0 0 0 chr9 55946764 55946797 -68129375 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1011 217 295 85 14 chr9 55947231 55947372 -68128800 - L2 LINE L2 -351 3068 2918 6 1011 207 220 136 0 chr9 55947370 55947429 -68128743 + MER5B DNA MER1_type 42 108 -70 6 1011 287 242 136 4 chr9 55947581 55947719 -68128453 - L1MB3 LINE L1 -20 6163 5991 6 1011 237 284 70 58 chr9 55947727 55947899 -68128273 - MTE2a LTR MaLR -7 372 199 6 1011 213 260 20 0 chr9 55948179 55948229 -68127943 - ID4_ SINE ID -7 76 26 6 1011 360 290 65 7 chr9 55948380 55948519 -68127653 - L1MB3 LINE L1 -215 5968 5822 6 1011 315 243 46 46 chr9 55949046 55949141 -68127031 - ID_B1 SINE B4 -176 116 16 6 1011 1306 300 27 47 chr9 55949160 55949921 -68126251 - L1M4 LINE L1 -592 5582 4845 6 1011 525 255 103 0 chr9 55949921 55950066 -68126106 + B3A SINE B2 1 160 -38 6 1011 363 78 0 0 chr9 55950070 55950121 -68126051 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1011 694 168 69 0 chr9 55950185 55950316 -68125856 - B3 SINE B2 -76 140 1 6 1011 573 219 81 0 chr9 55950316 55950476 -68125696 - L1M4 LINE L1 -1316 4824 4652 6 1011 543 151 0 0 chr9 55951362 55951455 -68124717 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1011 445 253 0 0 chr9 55951458 55951553 -68124619 - B4A SINE B4 -103 189 95 6 1011 271 264 83 28 chr9 55952335 55952479 -68123693 - MIRb SINE MIR -62 206 55 6 1011 382 146 12 12 chr9 55953228 55953311 -68122861 + CT-rich Low_complexity Low_complexity 2 84 0 6 1011 752 185 15 15 chr9 55953636 55953773 -68122399 - B1_Mur2 SINE Alu -1 148 12 6 1011 366 196 0 126 chr9 55953680 55953791 -68122381 - MT2B LTR ERVL -343 258 162 6 1011 902 257 81 73 chr9 55954212 55954607 -68121565 - RMER5 LTR ERV1 -4 530 133 6 1011 303 225 25 0 chr9 55954780 55954860 -68121312 + PB1D9 SINE Alu 39 120 0 6 1011 1192 133 16 0 chr9 55954864 55955052 -68121120 + B2_Mm2 SINE B2 1 191 -4 6 1011 258 32 0 0 chr9 55955655 55955686 -68120486 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1011 218 239 30 93 chr9 55955786 55955894 -68120278 + MIRm SINE MIR 76 176 -92 6 1011 180 77 0 0 chr9 55956839 55956865 -68119307 + (CTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1011 395 326 0 10 chr9 55956867 55956966 -68119206 - PB1D10 SINE Alu -12 105 8 6 1011 207 100 0 0 chr9 55956996 55957026 -68119146 + (AGGGGG)n Simple_repeat Simple_repeat 3 32 0 6 1011 613 250 82 14 chr9 55957033 55957179 -68118993 - B4 SINE B4 -55 237 82 6 1011 1734 96 124 17 chr9 55957189 55957487 -68118685 - Lx2A1 LINE L1 -1 7007 6678 6 1011 2056 71 50 0 chr9 55957483 55957764 -68118408 - Lx2A1 LINE L1 -444 6564 6270 6 1011 266 272 31 51 chr9 55957764 55957883 -68118289 - B4 SINE B4 -151 141 24 6 1011 1325 230 18 41 chr9 55958823 55959213 -68116959 - RMER17C LTR ERVK -29 381 1 6 1011 289 328 107 20 chr9 55959213 55959384 -68116788 - MER67B LTR ERV1 -193 468 281 6 1011 721 188 62 67 chr9 55959446 55959640 -68116532 - B3A SINE B2 -2 193 1 6 1011 1108 127 72 0 chr9 55960290 55960471 -68115701 - B2_Mm2 SINE B2 -1 194 1 6 1011 215 214 0 103 chr9 55961081 55961159 -68115013 - ID4_ SINE ID -13 70 1 7 1011 306 254 0 0 chr9 55962238 55962305 -68113867 + B4A SINE B4 4 70 -222 7 1011 186 71 0 0 chr9 55962528 55962556 -68113616 + (TC)n Simple_repeat Simple_repeat 2 29 0 7 1011 465 19 0 0 chr9 55962559 55962613 -68113559 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1011 1071 105 71 16 chr9 55964274 55964458 -68111714 + B2_Mm2 SINE B2 1 194 -1 7 1011 430 181 247 32 chr9 55965833 55965987 -68110185 - B3A SINE B2 0 198 12 7 1011 213 206 222 0 chr9 55966011 55966074 -68110098 + MIR SINE MIR 63 139 -123 7 1011 287 230 168 10 chr9 55966981 55967082 -68109090 - MIR SINE MIR -126 136 20 7 1011 216 0 0 0 chr9 55967429 55967453 -68108719 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1012 207 269 15 15 chr9 55968431 55968499 -68107673 + GA-rich Low_complexity Low_complexity 5 72 0 7 1012 624 196 210 29 chr9 55968578 55968783 -68107389 - MTD LTR MaLR 0 419 178 7 1012 207 0 0 0 chr9 55970236 55970259 -68105913 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1012 645 156 0 0 chr9 55970259 55970368 -68105804 - B1_Mur1 SINE Alu -17 132 24 7 1012 225 203 0 169 chr9 55970306 55970389 -68105783 - MT2B2 LTR ERVL -344 240 172 7 1012 205 88 29 0 chr9 55970415 55970449 -68105723 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1012 276 372 46 8 chr9 55971758 55971888 -68104284 - MIR SINE MIR -137 139 5 7 1012 218 154 154 0 chr9 55972108 55972160 -68104012 + MIRc SINE MIR 112 171 -97 7 1012 257 222 48 0 chr9 55973955 55974018 -68102154 + B3A SINE B2 28 93 -105 7 1012 207 0 0 0 chr9 55974080 55974103 -68102069 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1012 1180 27 0 13 chr9 55974103 55974252 -68101920 - B1_Mus2 SINE Alu 0 147 1 7 1012 286 207 19 0 chr9 55974278 55974351 -68101821 + PB1D9 SINE Alu 1 76 -71 7 1012 284 349 49 39 chr9 55979761 55979947 -68096225 + L1M5 LINE L1 5433 5617 -2265 7 1012 331 242 139 39 chr9 55980463 55980592 -68095580 - B3A SINE B2 -55 143 2 7 1012 390 259 45 3 chr9 55980604 55980744 -68095428 - B1F SINE Alu 0 149 6 7 1012 300 258 86 0 chr9 55980817 55980910 -68095262 + B1F SINE Alu 17 117 -32 7 1012 223 161 0 51 chr9 55981660 55981719 -68094453 + (TATG)n Simple_repeat Simple_repeat 4 59 0 7 1012 352 317 160 27 chr9 55981863 55982119 -68094053 + L1MC4 LINE L1 7753 8042 0 7 1012 223 164 17 52 chr9 55984732 55984790 -68091382 + (CGAGG)n Simple_repeat Simple_repeat 2 57 0 7 1012 1138 61 7 0 chr9 55985238 55985385 -68090787 + B1_Mus1 SINE Alu 1 148 0 7 1012 231 114 0 0 chr9 55985390 55985425 -68090747 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 7 1012 4330 166 97 53 chr9 55985886 55986951 -68089221 + L1_Mur3 LINE L1 892 2067 -3810 7 1012 306 0 0 0 chr9 55986951 55986985 -68089187 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1012 4330 149 134 58 chr9 55986985 55987376 -68088796 + L1_Mur3 LINE L1 2068 2420 -3457 7 1012 195 42 0 0 chr9 55987775 55987799 -68088373 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1012 1368 69 0 16 chr9 55987819 55988011 -68088161 + L1_Mus1 LINE L1 6378 6566 -1 7 1012 829 141 0 75 chr9 55988131 55988277 -68087895 + B1_Mur3 SINE Alu 1 135 -14 7 1012 429 20 0 0 chr9 55988361 55988411 -68087761 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1012 1178 76 58 0 chr9 55988411 55988583 -68087589 - B2_Mm2 SINE B2 -13 182 1 7 1012 616 219 237 0 chr9 55988917 55989086 -68087086 + B3 SINE B2 2 210 -6 7 1012 627 191 99 0 chr9 55989094 55989246 -68086926 - B3A SINE B2 -10 188 22 7 1012 445 276 167 4 chr9 55989254 55989487 -68086685 + L1MD2 LINE L1 6074 6344 -15 7 1012 577 221 100 7 chr9 55989701 55989851 -68086321 - B3 SINE B2 -52 164 1 7 1012 312 229 29 62 chr9 55990225 55990342 -68085830 - MER58B DNA MER1_type 0 341 244 7 1012 225 0 0 0 chr9 55991064 55991089 -68085083 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 1012 1117 50 0 0 chr9 55991091 55991232 -68084940 - B1_Mus1 SINE Alu -6 142 2 7 1012 915 136 20 0 chr9 55991353 55991500 -68084672 + B1_Mur4 SINE Alu 1 150 0 7 1012 259 222 77 26 chr9 55991922 55992116 -68084056 - RMER17A LTR ERVK -275 476 273 7 1012 276 314 152 0 chr9 55992117 55992222 -68083950 + PB1 SINE Alu 4 124 -3 7 1012 851 180 142 0 chr9 55992254 55992437 -68083735 + B3 SINE B2 1 209 -7 7 1012 22 0 0 0 chr9 55992450 55992472 -68083700 + AT_rich Low_complexity Low_complexity 1 22 0 7 1012 294 339 0 18 chr9 55992487 55992628 -68083544 + ID2 SINE ID 11 146 -6 7 1012 1839 109 53 3 chr9 55992724 55993028 -68083144 + ORR1A2 LTR MaLR 1 319 -8 7 1012 207 100 0 0 chr9 55993086 55993116 -68083056 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1012 388 257 81 14 chr9 55993829 55994007 -68082165 + MER3 DNA MER1_type 1 164 -45 7 1012 274 289 183 21 chr9 55995453 55995644 -68080528 - ID_B1 SINE B4 -1 223 2 7 1012 318 67 0 0 chr9 55996140 55996185 -68079987 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1012 855 139 21 0 chr9 55996196 55996340 -68079832 - B1_Mus1 SINE Alu -1 147 1 7 1012 189 0 0 0 chr9 55996481 55996502 -68079670 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 7 1012 1011 121 28 11 chr9 55997033 55997209 -68078963 - B2_Mm2 SINE B2 -6 189 11 7 1012 267 268 49 0 chr9 55997136 55997218 -68078954 - RSINE1 SINE B4 -79 86 1 7 1012 267 176 0 89 chr9 55997344 55997400 -68078772 - B1_Mur4 SINE Alu -8 142 92 7 1012 782 50 207 0 chr9 55997915 55998036 -68078136 - B1_Mm SINE Alu 0 147 2 7 1012 467 265 36 7 chr9 55998234 55998371 -68077801 + B1_Mur2 SINE Alu 4 144 -5 7 1012 2053 187 55 13 chr9 55998521 55998997 -68077175 - MYSERV16_I-int LTR ERVK -160 2166 1671 7 1012 457 277 0 56 chr9 55999062 55999188 -68076984 + B3A SINE B2 36 154 -44 7 1012 348 24 0 0 chr9 55999188 55999229 -68076943 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1012 287 237 90 135 chr9 55999229 55999259 -68076913 + B2_Mm2 SINE B2 147 184 -11 7 1012 189 171 0 0 chr9 56000021 56000056 -68076116 + GA-rich Low_complexity Low_complexity 1 35 0 1 1012 387 0 0 0 chr9 56000914 56000957 -68075215 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1012 1141 22 58 0 chr9 56001990 56002129 -68074043 + B1_Mus2 SINE Alu 1 147 0 3 1012 207 0 0 0 chr9 56003073 56003096 -68073076 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1012 222 62 0 0 chr9 56003168 56003200 -68072972 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1012 714 135 175 0 chr9 56003200 56003326 -68072846 - B1_Mus1 SINE Alu 0 148 1 6 1012 1125 172 108 0 chr9 56003403 56003607 -68072565 + URR1A DNA MER1_type 1 226 0 7 1012 243 0 0 0 chr9 56003671 56003698 -68072474 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1012 1088 110 0 0 chr9 56003704 56003849 -68072323 + B1_Mus2 SINE Alu 2 146 -1 9 1012 729 227 168 0 chr9 56004162 56004347 -68071825 - B3 SINE B2 0 216 1 1 1012 858 223 30 10 chr9 56005162 56005361 -68070811 + B3 SINE B2 5 207 -9 1 1012 243 0 0 0 chr9 56005381 56005408 -68070764 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1012 1105 67 0 0 chr9 56005408 56005542 -68070630 - B1_Mus2 SINE Alu -13 134 1 1 1012 271 269 148 37 chr9 56005664 56005772 -68070400 + RSINE1 SINE B4 38 157 -8 1 1012 219 219 29 72 chr9 56006426 56006495 -68069677 + MIRb SINE MIR 26 91 -177 1 1012 293 185 15 0 chr9 56006725 56006790 -68069382 + (CATA)n Simple_repeat Simple_repeat 2 67 0 1 1012 555 222 71 8 chr9 56006974 56007101 -68069071 + B1_Mus2 SINE Alu 1 135 -12 1 1012 216 0 0 0 chr9 56007101 56007125 -68069047 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1012 515 190 111 79 chr9 56009468 56009594 -68066578 - RSINE1 SINE B4 0 165 36 1 1012 193 366 106 8 chr9 56009695 56009827 -68066345 - MIRb SINE MIR -120 148 4 2 1012 258 308 45 36 chr9 56010004 56010115 -68066057 - L2a LINE L2 -49 3377 3266 2 1012 241 296 38 53 chr9 56010238 56010370 -68065802 - RMER15 LTR ERVL -104 471 342 2 1012 263 311 93 20 chr9 56010588 56010770 -68065402 - L2a LINE L2 -184 3191 2991 2 1012 204 40 0 0 chr9 56010859 56010884 -68065288 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2 1012 325 190 105 23 chr9 56010884 56010970 -68065202 - B1_Mur4 SINE Alu -12 138 46 2 1012 315 0 0 0 chr9 56010987 56011022 -68065150 + (ATTG)n Simple_repeat Simple_repeat 3 37 0 2 1012 790 142 8 8 chr9 56011045 56011173 -68064999 - B3 SINE B2 -87 129 2 2 1012 210 333 153 33 chr9 56012183 56012245 -68063927 - B4A SINE B4 -5 287 86 2 1012 434 297 59 0 chr9 56012245 56012363 -68063809 - PB1 SINE Alu -2 125 1 2 1012 1248 156 14 9 chr9 56012514 56012727 -68063445 + URR1A DNA MER1_type 5 218 -8 2 1012 269 220 57 133 chr9 56012819 56012924 -68063248 + MT2B LTR ERVL 168 264 -337 3 1012 651 195 0 42 chr9 56012835 56012953 -68063219 + B1_Mur1 SINE Alu 31 143 -6 3 1012 348 24 0 0 chr9 56014698 56014739 -68061433 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1012 417 20 0 0 chr9 56014739 56014788 -68061384 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1012 239 186 0 0 chr9 56014789 56014832 -68061340 - RSINE1 SINE B4 -50 115 73 3 1012 336 286 58 103 chr9 56015844 56016000 -68060172 + MIRb SINE MIR 10 158 -110 3 1012 981 211 64 46 chr9 56016038 56016321 -68059851 + B4A SINE B4 3 290 -2 3 1012 2145 168 43 23 chr9 56016351 56016399 -68059773 - MTD LTR MaLR -14 405 363 3 1012 2157 99 17 72 chr9 56016399 56016747 -68059425 - ORR1A4 LTR MaLR 0 329 1 3 1012 2145 168 43 23 chr9 56016747 56017094 -68059078 - MTD LTR MaLR -57 362 2 3 1012 230 336 127 0 chr9 56017140 56017250 -68058922 + PB1 SINE Alu 1 124 -3 3 1012 524 164 104 7 chr9 56017550 56017685 -68058487 - RMER1B Other Other 0 1066 919 4 1012 674 277 64 35 chr9 56017972 56018174 -68057998 - B4A SINE B4 -80 212 5 4 1012 396 290 107 28 chr9 56018210 56018519 -68057653 - L1M5 LINE L1 -1550 4596 4411 4 1012 387 0 0 0 chr9 56018725 56018768 -68057404 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1012 267 216 0 0 chr9 56018848 56018899 -68057273 - ID4_ SINE ID -31 52 2 4 1012 225 252 262 0 chr9 56018963 56019070 -68057102 - L1MB1 LINE L1 -164 6004 5870 4 1012 216 0 0 0 chr9 56019143 56019167 -68057005 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1012 294 231 0 0 chr9 56019200 56019291 -68056881 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 4 1012 420 250 16 148 chr9 56019300 56019422 -68056750 - B3 SINE B2 -74 142 37 4 1012 894 63 0 0 chr9 56019424 56019550 -68056622 + (TG)n Simple_repeat Simple_repeat 2 127 0 4 1012 3244 184 30 18 chr9 56019552 56019727 -68056445 - RLTR18 LTR ERVK 0 616 431 5 1012 2347 82 212 11 chr9 56019727 56020170 -68056002 - RLTR47_MM LTR ERV1 0 532 1 5 1012 3244 184 30 18 chr9 56020170 56020603 -68055569 - RLTR18 LTR ERVK -186 430 2 5 1012 814 234 44 5 chr9 56020652 56020858 -68055314 - L1M2 LINE L1 -566 5725 5512 5 1012 821 303 59 19 chr9 56020963 56021283 -68054889 + MTD LTR MaLR 1 333 -86 5 1012 423 250 24 24 chr9 56021452 56021579 -68054593 + MTE2a LTR MaLR 253 379 0 5 1012 180 97 0 0 chr9 56021653 56021684 -68054488 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1012 1249 34 0 20 chr9 56021688 56021839 -68054333 - B1_Mus1 SINE Alu 0 148 1 5 1012 514 295 106 0 chr9 56022156 56022363 -68053809 + MIRb SINE MIR 24 252 -16 5 1012 844 180 7 0 chr9 56022474 56022613 -68053559 - B1_Mus1 SINE Alu -6 142 3 5 1012 625 219 182 0 chr9 56022655 56022792 -68053380 + RSINE1 SINE B4 3 164 -1 5 1012 980 253 32 21 chr9 56022845 56023124 -68053048 + B4A SINE B4 5 286 -6 6 1012 226 265 44 0 chr9 56023618 56023686 -68052486 + ID4_ SINE ID 3 73 -10 6 1012 255 284 54 0 chr9 56023950 56024024 -68052148 - B4A SINE B4 -151 141 64 6 1012 1025 209 20 0 chr9 56024322 56024518 -68051654 + B3 SINE B2 1 200 -16 6 1012 561 45 0 0 chr9 56024779 56024845 -68051327 - L1_Mus1 LINE L1 -712 5855 5790 6 1012 2121 32 20 0 chr9 56024845 56025092 -68051080 + L1_Mus1 LINE L1 6314 6565 -2 6 1012 243 88 0 0 chr9 56025726 56025760 -68050412 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 6 1012 1318 150 79 9 chr9 56025760 56025989 -68050183 - ORR1B1 LTR MaLR -149 245 1 6 1012 805 291 67 26 chr9 56025989 56026257 -68049915 - B4 SINE B4 -5 287 9 6 1012 263 221 58 105 chr9 56026180 56026266 -68049906 - B3A SINE B2 -114 84 3 6 1012 2373 284 89 19 chr9 56026267 56026964 -68049208 + Arthur1 DNA Tip100 337 1082 -2865 7 1012 977 298 32 27 chr9 56026959 56027297 -68048875 + Arthur1 DNA Tip100 3358 3697 -250 7 1012 319 260 25 0 chr9 56027331 56027426 -68048746 + PB1D10 SINE Alu 9 109 -11 7 1012 365 271 106 114 chr9 56027454 56027691 -68048481 + Arthur1 DNA Tip100 3713 3947 0 7 1012 229 246 0 0 chr9 56028006 56028063 -68048109 - L1MD LINE L1 -1884 4262 4206 7 1012 375 309 62 62 chr9 56028668 56028861 -68047311 + MER3 DNA MER1_type 1 193 -16 7 1012 525 292 0 8 chr9 56029095 56029216 -68046956 + RSINE1 SINE B4 2 121 -44 7 1012 243 296 14 0 chr9 56029284 56029355 -68046817 + ID4 SINE ID 2 73 -10 7 1012 881 86 47 106 chr9 56030018 56030188 -68045984 + ORR1C2 LTR MaLR 1 160 -224 7 1012 7374 120 10 11 chr9 56030191 56031666 -68044506 + Lx LINE L1 5185 6654 0 7 1012 759 100 0 0 chr9 56031689 56031799 -68044373 + (TC)n Simple_repeat Simple_repeat 1 110 0 7 1012 950 186 72 5 chr9 56031818 56032013 -68044159 + ORR1C2 LTR MaLR 177 384 0 7 1012 789 158 7 80 chr9 56032187 56032338 -68043834 + B1_Mur3 SINE Alu 3 142 -7 7 1012 243 0 0 0 chr9 56032366 56032393 -68043779 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1012 11638 38 1 3 chr9 56032439 56034512 -68041660 - L1Md_F2 LINE L1 0 6582 4517 8 1012 921 270 94 29 chr9 56034965 56035209 -68040963 - MTE2b LTR MaLR -3 376 117 8 1012 352 229 14 0 chr9 56035661 56035731 -68040441 - ID4_ SINE ID -10 73 3 8 1012 460 126 0 22 chr9 56035743 56035832 -68040340 + (TCC)n Simple_repeat Simple_repeat 3 89 0 8 1012 3785 61 8 17 chr9 56035850 56036332 -68039840 - L1_Mus1 LINE L1 0 6567 6090 8 1012 252 122 0 0 chr9 56036359 56036400 -68039772 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 8 1012 396 0 0 0 chr9 56036400 56036444 -68039728 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 1012 1307 86 11 0 chr9 56036444 56036618 -68039554 - B2_Mm1t SINE B2 -17 176 1 8 1012 1230 41 7 0 chr9 56036629 56036775 -68039397 - B1_Mm SINE Alu 0 147 1 8 1012 1134 195 19 5 chr9 56036795 56037006 -68039166 - B3 SINE B2 -1 215 2 9 1012 694 214 39 120 chr9 56037022 56037256 -68038916 - B3 SINE B2 0 216 2 9 1012 530 146 41 10 chr9 56037270 56037367 -68038805 - B1_Mur1 SINE Alu -1 148 49 9 1012 345 47 0 0 chr9 56037376 56037419 -68038753 + (GGA)n Simple_repeat Simple_repeat 2 44 0 9 1012 294 234 16 0 chr9 56037431 56037495 -68038677 + ID4_ SINE ID 3 67 -16 9 1012 771 188 0 28 chr9 56037495 56037636 -68038536 + B1_Mur2 SINE Alu 3 140 -9 9 1012 817 270 45 0 chr9 56037652 56037852 -68038320 + B3 SINE B2 3 211 -5 9 1012 873 177 0 21 chr9 56037874 56038018 -68038154 + B1_Mur3 SINE Alu 1 141 -8 9 1012 392 181 12 0 chr9 56038023 56038106 -68038066 + (TGAA)n Simple_repeat Simple_repeat 4 87 0 9 1012 483 306 90 54 chr9 56038571 56039016 -68037156 + L1ME2z LINE L1 5695 6155 -289 9 1012 291 54 0 0 chr9 56039729 56039766 -68036406 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1012 262 314 48 10 chr9 56041728 56041831 -68034341 + L2c LINE L2 3046 3152 -235 1 1012 192 296 185 0 chr9 56042097 56042178 -68033994 + MIR3 SINE MIR 82 177 -31 1 1012 788 182 22 0 chr9 56042472 56042609 -68033563 + B1_Mus2 SINE Alu 2 141 -6 1 1012 2475 170 7 2 chr9 56044576 56044995 -68031177 + MTC LTR MaLR 1 421 0 1 1012 320 260 14 0 chr9 56045279 56045352 -68030820 - ID4 SINE ID -9 74 1 1 1012 1363 77 22 0 chr9 56045631 56045812 -68030360 - B2_Mm2 SINE B2 -6 189 5 1 1012 481 220 101 0 chr9 56047027 56047136 -68029036 - B3A SINE B2 -75 123 4 1 1012 201 260 77 39 chr9 56051631 56051735 -68024437 + L3 LINE CR1 1011 1118 -3371 1 1012 1037 240 72 21 chr9 56055713 56056072 -68020100 + L1MA5 LINE L1 4899 5280 -863 1 1012 1034 92 42 7 chr9 56056072 56056214 -68019958 + B1_Mus1 SINE Alu 1 147 -1 1 1012 1037 240 72 21 chr9 56056214 56056241 -68019931 + L1MA5 LINE L1 5281 5305 -838 1 1012 387 155 0 0 chr9 56056326 56056410 -68019762 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1012 625 271 24 6 chr9 56056464 56056631 -68019541 + B3A SINE B2 2 171 -27 1 1012 825 286 193 22 chr9 56056691 56057292 -68018880 + L1MA5 LINE L1 5466 6169 -131 1 1012 4684 115 72 19 chr9 56057506 56058366 -68017806 + RMER17A2 LTR ERVK 1 906 0 1 1012 24 53 0 0 chr9 56058749 56058787 -68017385 + AT_rich Low_complexity Low_complexity 1 38 0 1 1012 273 271 112 37 chr9 56059498 56059675 -68016497 + MIRc SINE MIR 18 211 -57 1 1012 180 77 0 0 chr9 56059930 56059956 -68016216 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1012 406 232 43 58 chr9 56059956 56060121 -68016051 - B1F SINE Alu 0 149 1 1 1012 261 83 0 0 chr9 56061429 56061465 -68014707 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1 1012 485 275 0 0 chr9 56066185 56066294 -68009878 + PB1D10 SINE Alu 5 113 -4 1 1012 213 342 3 0 chr9 56066538 56066601 -68009571 - L2b LINE L2 -63 3324 3233 1 1012 353 290 70 31 chr9 56066701 56066829 -68009343 + MTE-int LTR MaLR 290 422 -1158 1 1012 480 315 35 98 chr9 56066939 56067224 -68008948 + ORR1E LTR MaLR 79 345 -14 1 1012 669 25 0 0 chr9 56067671 56067750 -68008422 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 1 1012 5758 54 25 8 chr9 56067752 56068476 -68007696 - L1Md_F2 LINE L1 -23 6559 5824 1 1012 243 241 71 12 chr9 56069111 56069195 -68006977 - MIRc SINE MIR -20 248 160 1 1012 357 357 111 30 chr9 56069480 56069751 -68006421 + MLT1B LTR MaLR 81 373 -1 1 1012 666 315 30 35 chr9 56069759 56070137 -68006035 + MLT1B-int LTR MaLR 27 521 -850 1 1012 562 220 20 54 chr9 56070187 56070336 -68005836 - ID_B1 SINE B4 0 224 81 1 1012 229 250 0 16 chr9 56070336 56070397 -68005775 + MLT1B-int LTR MaLR 608 667 -704 1 1012 528 241 18 38 chr9 56070635 56070803 -68005369 + B3A SINE B2 63 215 -1 1 1012 624 242 133 45 chr9 56071032 56071296 -68004876 + MLT-int LTR MaLR 1392 1678 -57 1 1012 773 0 0 0 chr9 56071296 56071378 -68004794 + MERVL-int LTR ERVL 1849 1930 -3555 1 1012 2665 54 89 13 chr9 56071378 56071770 -68004402 - LSU-rRNA_Hsa rRNA rRNA -23 5012 4591 1 1012 458 246 216 52 chr9 56071809 56072096 -68004076 + MLT1B LTR MaLR 4 337 -53 1 1012 238 250 0 0 chr9 56072123 56072167 -68004005 + ID4_ SINE ID 29 72 -11 1 1012 369 0 0 0 chr9 56072167 56072208 -68003964 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1012 226 246 0 66 chr9 56072211 56072272 -68003900 + MLT1B LTR MaLR 318 374 0 1 1012 339 25 0 0 chr9 56073733 56073773 -68002399 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1012 375 250 0 96 chr9 56073802 56073917 -68002255 - RSINE1 SINE B4 -58 107 4 1 1012 291 269 52 9 chr9 56073927 56074051 -68002121 + MIRb SINE MIR 64 188 -88 1 1012 1200 249 56 9 chr9 56074244 56074584 -68001588 + MTEb LTR MaLR 1 356 -23 1 1012 362 215 0 37 chr9 56074784 56074866 -68001306 + B1_Mur1 SINE Alu 34 112 -37 1 1012 823 322 78 22 chr9 56076393 56076803 -67999369 + MLT1C LTR MaLR 35 467 0 1 1012 1173 228 126 20 chr9 56076845 56077186 -67998986 + MTEa LTR MaLR 1 377 -2 1 1012 1626 21 16 0 chr9 56077335 56077523 -67998649 + B2_Mm1t SINE B2 2 192 -1 1 1012 266 186 68 0 chr9 56077759 56077818 -67998354 + ID4_ SINE ID 3 65 -18 1 1012 374 85 17 0 chr9 56077831 56077890 -67998282 + (CTAA)n Simple_repeat Simple_repeat 3 62 0 1 1012 2340 260 116 109 chr9 56077890 56078421 -67997751 + L1M4 LINE L1 3499 3995 -2151 1 1012 717 156 39 90 chr9 56078421 56078576 -67997596 - B1_Mur4 SINE Alu -1 149 3 1 1012 2340 260 116 109 chr9 56078576 56078833 -67997339 + L1M4 LINE L1 3996 4264 -1882 1 1012 811 252 22 48 chr9 56078833 56079062 -67997110 + ID_B1 SINE B4 2 224 0 1 1012 2340 260 116 109 chr9 56079062 56079797 -67996375 + L1M4 LINE L1 4265 5033 -1113 1 1012 294 159 175 0 chr9 56079805 56079868 -67996304 - ID4 SINE ID -8 75 2 1 1012 1537 242 76 23 chr9 56080163 56080732 -67995440 + L1M4 LINE L1 5188 5800 -384 1 1012 534 243 19 0 chr9 56081452 56081559 -67994613 - B3 SINE B2 -101 115 7 1 1012 218 147 43 14 chr9 56081563 56081632 -67994540 + CT-rich Low_complexity Low_complexity 2 72 0 1 1012 395 185 70 134 chr9 56081648 56081665 -67994507 - B2_Mm2 SINE B2 0 195 174 1 1012 1264 27 0 0 chr9 56081665 56081812 -67994360 - B1_Mm SINE Alu 0 147 1 1 1012 693 185 70 134 chr9 56081812 56081981 -67994191 - B3A SINE B2 -22 173 21 1 1012 205 51 25 25 chr9 56083882 56083922 -67992250 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 1 1012 241 26 26 26 chr9 56084365 56084404 -67991768 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1012 544 274 65 7 chr9 56084406 56084560 -67991612 - RSINE1 SINE B4 0 165 3 1 1012 222 262 46 27 chr9 56085090 56085181 -67990991 - L2b LINE L2 -2 3424 3303 1 1012 545 259 132 20 chr9 56085565 56085762 -67990410 - B4A SINE B4 -39 253 35 1 1012 381 259 74 0 chr9 56085800 56085908 -67990264 - PB1D10 SINE Alu -1 116 1 1 1012 347 272 0 0 chr9 56086508 56086589 -67989583 - BC1_Mm scRNA scRNA -63 89 9 1 1012 425 289 8 23 chr9 56086894 56087025 -67989147 - ID_B1 SINE B4 -3 221 93 1 1012 360 43 0 0 chr9 56087029 56087075 -67989097 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1012 277 370 0 0 chr9 56087098 56087198 -67988974 - B1F SINE Alu -47 102 3 1 1012 1193 69 0 0 chr9 56088659 56088804 -67987368 + B1_Mus2 SINE Alu 3 147 0 1 1012 278 26 26 0 chr9 56088804 56088843 -67987329 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1012 678 203 0 15 chr9 56089216 56089351 -67986821 + B1_Mur2 SINE Alu 1 133 -16 1 1012 230 291 67 17 chr9 56090103 56090222 -67985950 - B4A SINE B4 -8 284 160 1 1012 26 0 0 0 chr9 56090550 56090576 -67985596 + AT_rich Low_complexity Low_complexity 1 26 0 1 1012 288 272 118 16 chr9 56090939 56091066 -67985106 + B4 SINE B4 2 141 -151 1 1012 422 258 35 32 chr9 56091086 56091223 -67984949 + B1F SINE Alu 3 144 -5 1 1012 444 246 203 40 chr9 56091410 56091601 -67984571 - B4A SINE B4 -6 286 65 1 1012 467 268 69 6 chr9 56093132 56093305 -67982867 + MER2 DNA MER2_type 52 235 -110 1 1012 392 287 0 133 chr9 56093299 56093360 -67982812 + B1F1 SINE Alu 7 59 -90 1 1012 1505 32 26 11 chr9 56093360 56093519 -67982653 + B2_Mm1a SINE B2 2 160 -33 1 1012 186 43 0 0 chr9 56093519 56093542 -67982630 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1012 1505 32 26 11 chr9 56093542 56093571 -67982601 + B2_Mm1a SINE B2 161 193 0 1 1012 392 287 0 133 chr9 56093571 56093674 -67982498 + B1F1 SINE Alu 60 149 0 1 1012 352 317 61 38 chr9 56093677 56093808 -67982364 + MER2 DNA MER2_type 211 344 -1 1 1012 406 336 15 7 chr9 56095667 56095802 -67980370 - MIRb SINE MIR -115 153 18 1 1012 29 47 0 0 chr9 56096130 56096173 -67979999 + AT_rich Low_complexity Low_complexity 1 43 0 1 1012 250 229 313 69 chr9 56096470 56096613 -67979559 - MER20 DNA MER1_type -4 215 38 1 1012 315 287 198 30 chr9 56097041 56097278 -67978894 - L2 LINE L2 -837 2582 2306 1 1012 999 198 44 15 chr9 56097450 56097655 -67978517 - B3 SINE B2 -4 212 2 1 1012 605 173 0 8 chr9 56097670 56097798 -67978374 + CT-rich Low_complexity Low_complexity 1 127 0 1 1012 323 211 12 106 chr9 56097808 56097893 -67978279 - PB1D10 SINE Alu -20 97 21 1 1012 2217 129 128 112 chr9 56097932 56098448 -67977724 - RLTR28 LTR ERVL 0 524 1 1 1012 237 65 0 0 chr9 56098465 56098496 -67977676 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 1 1013 707 273 319 40 chr9 56099193 56100037 -67976135 - Charlie1 DNA MER1_type -260 2521 1443 1 1013 286 261 67 11 chr9 56100066 56100155 -67976017 - MTE2a LTR MaLR -4 375 282 1 1013 1625 142 95 33 chr9 56100373 56100819 -67975353 - Lx2B LINE L1 -3 6997 6444 1 1013 398 253 142 0 chr9 56100824 56100986 -67975186 - L1MA7 LINE L1 -132 6159 5975 1 1013 6299 66 45 4 chr9 56101133 56101970 -67974202 + Lx3_Mus LINE L1 6136 7007 -2 1 1013 210 37 0 0 chr9 56101975 56102002 -67974170 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 1013 373 291 0 0 chr9 56102029 56102115 -67974057 - PB1D10 SINE Alu -30 87 2 1 1013 202 269 247 0 chr9 56103001 56103094 -67973078 + MER5A DNA MER1_type 2 117 -72 1 1013 517 161 35 35 chr9 56103112 56103228 -67972944 + PB1D9 SINE Alu 5 120 0 1 1013 208 139 0 0 chr9 56103252 56103288 -67972884 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1013 459 141 0 0 chr9 56104239 56104317 -67971855 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1013 254 320 12 25 chr9 56104362 56104442 -67971730 - ID SINE ID -144 80 2 1 1013 320 247 22 11 chr9 56109280 56109370 -67966802 + MER5A1 DNA MER1_type 4 94 -72 1 1013 643 245 98 6 chr9 56109801 56109965 -67966207 - B4A SINE B4 -1 291 113 1 1013 262 274 16 0 chr9 56110224 56110286 -67965886 + ID4_ SINE ID 2 64 -19 1 1013 207 100 0 0 chr9 56110434 56110464 -67965708 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1013 180 111 0 0 chr9 56110466 56110493 -67965679 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1013 526 289 13 7 chr9 56110641 56110791 -67965381 + L1M5 LINE L1 5554 5704 -475 2 1013 440 187 22 0 chr9 56110811 56110902 -67965270 + L1ME1 LINE L1 6077 6169 -10 2 1013 527 260 32 8 chr9 56111946 56112070 -67964102 - RSINE1 SINE B4 -36 129 3 2 1013 24 67 0 0 chr9 56113113 56113158 -67963014 + AT_rich Low_complexity Low_complexity 1 45 0 2 1013 231 143 35 35 chr9 56113238 56113296 -67962876 + A-rich Low_complexity Low_complexity 2 59 0 2 1013 451 257 37 0 chr9 56113352 56113488 -67962684 - Lx7 LINE L1 -429 7267 7127 2 1013 334 172 115 0 chr9 56113485 56113572 -67962600 + Lx7 LINE L1 7015 7111 -585 2 1013 206 244 0 0 chr9 56114541 56114582 -67961590 + (ATG)n Simple_repeat Simple_repeat 2 42 0 2 1013 206 311 14 0 chr9 56115194 56115268 -67960904 + A-rich Low_complexity Low_complexity 2 76 0 2 1013 715 272 80 19 chr9 56115685 56115890 -67960282 + B4A SINE B4 4 225 -67 2 1013 522 0 0 0 chr9 56115890 56115948 -67960224 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1013 715 272 80 19 chr9 56115948 56116004 -67960168 + B4A SINE B4 226 281 -11 2 1013 519 250 15 38 chr9 56116336 56116469 -67959703 + B3A SINE B2 1 130 -68 2 1013 194 0 39 0 chr9 56117534 56117560 -67958612 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1013 580 287 153 31 chr9 56118468 56118756 -67957416 + Tigger15a DNA TcMar 283 605 -110 2 1013 425 203 160 8 chr9 56120940 56121059 -67955113 + B3 SINE B2 78 214 -2 2 1013 213 39 0 0 chr9 56121328 56121354 -67954818 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2 1013 508 208 10 10 chr9 56122073 56122175 -67953997 + ORR1D2 LTR MaLR 1 102 -268 2 1013 12575 35 5 4 chr9 56122177 56124463 -67951709 - L1Md_F2 LINE L1 0 6582 4290 2 1013 631 219 81 9 chr9 56124463 56124713 -67951459 + ORR1D2 LTR MaLR 73 370 0 2 1013 1637 166 95 58 chr9 56124898 56125193 -67950979 - Lx7 LINE L1 0 7696 7323 2 1013 387 41 0 0 chr9 56125193 56125242 -67950930 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1013 1637 183 128 18 chr9 56125242 56125664 -67950508 - Lx7 LINE L1 -374 7322 6852 2 1013 1165 75 0 0 chr9 56125783 56125930 -67950242 + B1_Mus2 SINE Alu 1 147 0 2 1013 193 298 270 6 chr9 56126068 56126227 -67949945 - MIRb SINE MIR -39 229 29 2 1013 322 20 19 39 chr9 56126630 56126682 -67949490 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 1013 378 179 51 0 chr9 56126691 56126769 -67949403 - MER5A1 DNA MER1_type -1 165 84 2 1013 217 301 0 76 chr9 56126888 56126967 -67949205 + ID2 SINE ID 11 83 0 2 1013 846 254 5 42 chr9 56127119 56127312 -67948860 + B3 SINE B2 1 186 -30 2 1013 291 28 0 0 chr9 56127312 56127348 -67948824 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1013 1486 247 115 14 chr9 56127405 56127788 -67948384 + L1MC1 LINE L1 4734 5165 -981 2 1013 219 69 0 0 chr9 56127788 56127817 -67948355 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1013 1486 267 117 11 chr9 56127817 56128357 -67947815 + L1MC1 LINE L1 5166 5789 -390 2 1013 352 308 128 70 chr9 56128450 56128834 -67947338 - MLT1A1 LTR MaLR -2 406 1 2 1013 378 258 15 8 chr9 56128895 56129028 -67947144 + L1MC1 LINE L1 5840 5973 -360 2 1013 360 0 0 0 chr9 56129124 56129164 -67947008 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1013 491 332 65 28 chr9 56129223 56129545 -67946627 + Lx8 LINE L1 6946 7279 -194 2 1013 211 242 97 0 chr9 56129880 56129942 -67946230 + B1_Mur2 SINE Alu 76 143 -6 2 1013 30 0 0 0 chr9 56130025 56130055 -67946117 + AT_rich Low_complexity Low_complexity 1 30 0 2 1013 207 0 0 0 chr9 56130396 56130419 -67945753 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1013 7442 48 11 2 chr9 56130683 56132133 -67944039 - L1Md_F2 LINE L1 -12 6570 5108 2 1013 521 271 152 0 chr9 56132330 56132481 -67943691 + MLT1D LTR MaLR 330 503 -2 2 1013 414 39 0 0 chr9 56132984 56133036 -67943136 + (GGGGA)n Simple_repeat Simple_repeat 1 52 0 2 1013 397 207 243 0 chr9 56134124 56134235 -67941937 - B1F2 SINE Alu -10 139 2 2 1013 255 381 97 60 chr9 56134489 56134757 -67941415 + L4 LINE RTE 1014 1291 -738 2 1013 482 279 58 85 chr9 56134812 56135000 -67941172 - RMER30 DNA MER1_type 0 202 20 2 1013 285 258 45 0 chr9 56135026 56135092 -67941080 + Charlie12 DNA MER1_type 415 483 -2390 2 1013 3070 122 6 6 chr9 56135102 56135572 -67940600 - RLTR31B_Mm LTR ERVK -87 470 1 2 1013 1270 239 151 31 chr9 56135794 56136304 -67939868 + Charlie12 DNA MER1_type 647 1217 -1656 2 1013 3236 271 76 45 chr9 56136362 56137551 -67938621 + Charlie12 DNA MER1_type 1498 2720 -153 2 1013 243 61 0 0 chr9 56137551 56137584 -67938588 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2 1013 3236 271 76 45 chr9 56137584 56137729 -67938443 + Charlie12 DNA MER1_type 2721 2872 -1 2 1013 546 286 20 13 chr9 56137926 56138075 -67938097 - RSINE1 SINE B4 0 165 16 2 1013 339 25 0 0 chr9 56138230 56138270 -67937902 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1013 6913 68 27 18 chr9 56138290 56139411 -67936761 + L1_Mus2 LINE L1 5436 6566 0 2 1013 861 161 6 51 chr9 56139438 56139449 -67936723 - B2_Mm2 SINE B2 -25 170 159 2 1013 702 0 0 0 chr9 56139449 56139527 -67936645 + (TTTC)n Simple_repeat Simple_repeat 1 78 0 2 1013 861 161 6 51 chr9 56139527 56139692 -67936480 - B2_Mm2 SINE B2 -37 158 2 2 1013 718 229 130 70 chr9 56139795 56140025 -67936147 + B4A SINE B4 2 245 -47 2 1013 425 363 89 31 chr9 56140304 56140662 -67935510 - L1M4 LINE L1 -1101 5045 4667 2 1013 343 325 158 25 chr9 56140680 56140958 -67935214 - L1MEa LINE L1 -3385 2761 2447 2 1013 524 219 129 51 chr9 56141034 56141212 -67934960 - B3A SINE B2 -2 196 5 2 1013 573 321 164 29 chr9 56141370 56142540 -67933632 - L1MEa LINE L1 -4450 1792 456 2 1013 200 106 0 60 chr9 56143635 56143685 -67932487 + T-rich Low_complexity Low_complexity 1 47 0 2 1013 944 155 0 19 chr9 56143951 56144320 -67931852 + (CCA)n Simple_repeat Simple_repeat 1 361 0 2 1013 23 86 0 0 chr9 56144892 56144950 -67931222 + AT_rich Low_complexity Low_complexity 1 58 0 2 1013 27 29 0 0 chr9 56145055 56145089 -67931083 + AT_rich Low_complexity Low_complexity 1 34 0 2 1013 352 263 0 0 chr9 56146269 56146345 -67929827 + PB1D10 SINE Alu 41 116 -1 2 1013 1479 199 78 3 chr9 56146634 56146967 -67929205 - L1_Mur3 LINE L1 -18 5862 5505 2 1013 1397 301 60 102 chr9 56146988 56147438 -67928734 + Lx5 LINE L1 6046 6465 -593 2 1013 429 109 0 0 chr9 56147438 56147502 -67928670 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1013 1715 302 56 97 chr9 56147502 56148115 -67928057 + Lx5 LINE L1 6446 7032 -18 2 1013 769 238 34 29 chr9 56148247 56148455 -67927717 + B3 SINE B2 2 210 -6 2 1013 21 36 0 0 chr9 56148468 56148496 -67927676 + AT_rich Low_complexity Low_complexity 1 28 0 2 1013 378 350 94 40 chr9 56148730 56148879 -67927293 + B3A SINE B2 4 160 -38 2 1013 644 245 0 109 chr9 56149269 56149285 -67926887 + B1_Mur1 SINE Alu 2 17 -132 2 1013 1642 157 63 29 chr9 56149285 56149632 -67926540 + RLTR15 LTR ERVK 1 359 0 2 1013 644 245 0 109 chr9 56149632 56149754 -67926418 + B1_Mur1 SINE Alu 18 133 -16 2 1013 2128 115 48 6 chr9 56149754 56150070 -67926102 - ORR1A4 LTR MaLR 0 329 1 2 1013 644 245 0 109 chr9 56150070 56150081 -67926091 + B1_Mur1 SINE Alu 134 139 -10 2 1013 255 31 0 0 chr9 56150081 56150113 -67926059 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 2 1013 644 245 0 109 chr9 56150113 56150126 -67926046 + B1_Mur1 SINE Alu 140 148 -1 2 1013 24 32 0 0 chr9 56150153 56150184 -67925988 + AT_rich Low_complexity Low_complexity 1 31 0 2 1013 187 114 0 43 chr9 56150334 56150380 -67925792 + (CATA)n Simple_repeat Simple_repeat 3 46 0 2 1013 29 28 0 0 chr9 56150504 56150540 -67925632 + AT_rich Low_complexity Low_complexity 1 36 0 2 1013 21 0 0 0 chr9 56151815 56151836 -67924336 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 486 0 0 0 chr9 56152020 56152074 -67924098 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1013 678 179 9 0 chr9 56152864 56152976 -67923196 - B1_Mus1 SINE Alu 0 148 36 2 1013 381 256 0 11 chr9 56152977 56153068 -67923104 - 4.5SRNA scRNA scRNA -4 90 1 2 1013 239 302 0 0 chr9 56153527 56153590 -67922582 + ID4 SINE ID 19 81 -2 2 1013 208 184 0 39 chr9 56153595 56153646 -67922526 + GA-rich Low_complexity Low_complexity 3 51 0 2 1013 952 226 27 31 chr9 56154210 56154434 -67921738 - ID_B1 SINE B4 0 224 2 2 1013 880 215 22 28 chr9 56154680 56154862 -67921310 - B3 SINE B2 -31 185 5 2 1013 216 0 0 0 chr9 56154862 56154886 -67921286 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1013 499 309 117 36 chr9 56154894 56155264 -67920908 + L1MC LINE L1 3700 4100 -2046 2 1013 237 208 0 0 chr9 56155399 56155460 -67920712 + L1M5 LINE L1 4288 4348 -1798 2 1013 250 382 27 0 chr9 56155528 56155638 -67920534 + B1F2 SINE Alu 1 113 -36 2 1013 523 0 30 0 chr9 56155655 56155722 -67920450 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1013 354 205 64 64 chr9 56155725 56155850 -67920322 + L1M5 LINE L1 4478 4602 -1544 2 1013 446 313 128 12 chr9 56155853 56156102 -67920070 - L1ME4a LINE L1 -233 5891 5614 2 1013 22 0 0 0 chr9 56156267 56156289 -67919883 + AT_rich Low_complexity Low_complexity 1 22 0 2 1013 237 252 34 22 chr9 56157762 56157869 -67918303 - L1MD LINE L1 -2053 4093 3979 2 1013 501 264 0 9 chr9 56157979 56158086 -67918086 - PB1D7 SINE Alu -10 110 5 2 1013 571 274 169 45 chr9 56158104 56158328 -67917844 - L1ME4a LINE L1 -2273 3873 3621 2 1013 550 290 75 35 chr9 56158328 56158528 -67917644 + B3 SINE B2 1 208 -8 2 1013 666 265 140 27 chr9 56158528 56159192 -67916980 - L1ME4a LINE L1 -2526 3620 2875 2 1013 652 267 28 47 chr9 56159200 56159412 -67916760 + ID_B1 SINE B4 2 209 -15 2 1013 399 335 44 7 chr9 56159451 56159750 -67916422 - L1M4 LINE L1 -406 5772 5463 2 1013 893 200 124 0 chr9 56160395 56160580 -67915592 + B3 SINE B2 2 209 -7 2 1013 182 273 230 10 chr9 56161720 56161820 -67914352 + MIRb SINE MIR 26 147 -121 2 1013 917 299 85 0 chr9 56161907 56162201 -67913971 + MLT1A0 LTR MaLR 23 341 -24 2 1013 2541 220 27 17 chr9 56162258 56162956 -67913216 + Lx7 LINE L1 6885 7676 -20 2 1013 1227 250 90 6 chr9 56162964 56163298 -67912874 + ORR1D2 LTR MaLR 9 370 0 2 1013 315 0 0 0 chr9 56164298 56164333 -67911839 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1013 402 288 32 76 chr9 56165127 56165285 -67910887 + B4A SINE B4 1 151 -141 2 1013 897 209 96 147 chr9 56165318 56165671 -67910501 + MTE2a LTR MaLR 3 337 -42 2 1013 289 244 11 79 chr9 56165680 56165769 -67910403 + B4A SINE B4 210 292 0 2 1013 522 0 0 0 chr9 56166633 56166691 -67909481 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1013 21 36 0 0 chr9 56167093 56167121 -67909051 + AT_rich Low_complexity Low_complexity 1 28 0 2 1013 416 291 206 57 chr9 56167796 56168452 -67907720 - L1MEf LINE L1 -3967 2433 1647 3 1013 576 278 8 0 chr9 56168630 56168756 -67907416 - RSINE1 SINE B4 -36 129 3 3 1013 428 95 109 59 chr9 56169453 56169554 -67906618 - URR1B DNA MER1_type 0 225 120 3 1013 504 48 0 0 chr9 56169699 56169762 -67906410 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1013 288 154 0 0 chr9 56169762 56169814 -67906358 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1013 22 0 0 0 chr9 56169954 56169976 -67906196 + AT_rich Low_complexity Low_complexity 1 22 0 3 1013 585 154 66 91 chr9 56170039 56170160 -67906012 + B1_Mur4 SINE Alu 1 118 -32 3 1013 343 231 53 175 chr9 56170160 56170222 -67905950 + MT2B LTR ERVL 172 324 -277 3 1013 237 108 0 0 chr9 56170315 56170352 -67905820 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1013 688 48 4 0 chr9 56170352 56170449 -67905723 - B1_Mm SINE Alu 0 149 49 3 1013 485 271 96 38 chr9 56170482 56170639 -67905533 + MTEa LTR MaLR 1 166 -213 3 1013 1903 177 96 47 chr9 56170776 56171203 -67904969 + RMER4A LTR ERVK 17 464 -2 3 1013 297 255 168 28 chr9 56171241 56171339 -67904833 - B1F1 SINE Alu -13 104 1 3 1013 801 284 90 36 chr9 56171516 56171794 -67904378 + MER58B DNA MER1_type 1 293 -48 3 1013 534 279 99 101 chr9 56173127 56173523 -67902649 + L1MEc LINE L1 795 1191 -5209 3 1013 402 302 51 57 chr9 56173523 56173681 -67902491 + RSINE1 SINE B4 4 160 -5 3 1013 534 279 99 101 chr9 56173681 56173698 -67902474 + L1MEc LINE L1 1192 1207 -5193 3 1013 296 233 11 64 chr9 56173988 56174076 -67902096 - BC1_Mm scRNA scRNA -69 83 2 3 1013 333 119 25 25 chr9 56174137 56174206 -67901966 + PB1 SINE Alu 56 147 -2 3 1013 341 285 65 38 chr9 56174749 56175203 -67900969 + L1MEc LINE L1 2968 3433 -2886 3 1013 481 265 61 0 chr9 56175238 56175370 -67900802 + Tigger7 DNA MER2_type 335 474 -2017 3 1013 518 191 26 9 chr9 56175749 56175865 -67900307 - PB1D9 SINE Alu -1 119 2 3 1013 339 299 56 41 chr9 56175965 56176160 -67900012 + L1MC1 LINE L1 5946 6143 -190 3 1013 927 291 47 33 chr9 56177492 56177766 -67898406 + B4 SINE B4 15 292 0 3 1013 30 0 0 0 chr9 56177978 56178008 -67898164 + AT_rich Low_complexity Low_complexity 1 30 0 3 1013 637 207 72 22 chr9 56178057 56178195 -67897977 + B1_Mur1 SINE Alu 3 147 -2 3 1013 210 185 19 0 chr9 56178197 56178251 -67897921 + (TAA)n Simple_repeat Simple_repeat 1 55 0 3 1013 413 252 126 0 chr9 56178296 56178399 -67897773 - B1F SINE Alu -14 135 20 3 1013 945 103 18 6 chr9 56178974 56179140 -67897032 + L1_Mur2 LINE L1 5221 5388 -489 3 1013 187 343 158 28 chr9 56179860 56180037 -67896135 + MIRb SINE MIR 46 245 -23 3 1013 624 256 15 8 chr9 56180826 56180956 -67895216 - B1_Mur1 SINE Alu -1 148 18 3 1013 984 58 178 6 chr9 56180962 56181119 -67895053 + B2_Mm2 SINE B2 1 184 -11 3 1013 192 299 102 11 chr9 56181895 56181983 -67894189 + MIRc SINE MIR 106 201 -67 3 1013 1568 202 44 78 chr9 56182982 56183416 -67892756 - MTD LTR MaLR 0 419 1 3 1013 562 263 53 0 chr9 56183418 56183551 -67892621 + RSINE1 SINE B4 3 142 -23 3 1013 258 32 0 0 chr9 56183720 56183751 -67892421 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1013 196 328 61 113 chr9 56184496 56184709 -67891463 + L2c LINE L2 3026 3227 -160 3 1013 2935 58 63 0 chr9 56185915 56186311 -67889861 - BGLII LTR ERVK 0 421 1 3 1013 785 188 202 17 chr9 56187077 56187250 -67888922 + B3 SINE B2 2 206 -10 3 1013 504 258 24 24 chr9 56187718 56187845 -67888327 + B3 SINE B2 1 127 -89 3 1013 538 137 137 0 chr9 56188214 56188309 -67887863 - B1_Mur1 SINE Alu 0 149 42 3 1013 891 107 0 15 chr9 56188333 56188466 -67887706 + B1_Mur3 SINE Alu 7 137 -12 3 1013 188 0 74 0 chr9 56188468 56188495 -67887677 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1013 448 315 21 0 chr9 56188938 56189081 -67887091 + B1F1 SINE Alu 3 148 -1 3 1013 618 239 18 24 chr9 56189466 56189619 -67886553 + B3A SINE B2 6 167 -26 3 1013 21 0 0 0 chr9 56189727 56189748 -67886424 + AT_rich Low_complexity Low_complexity 1 21 0 3 1013 308 330 161 21 chr9 56190706 56191185 -67884987 - L1MC4 LINE L1 -372 7670 7125 3 1013 604 269 54 37 chr9 56191754 56192051 -67884121 - L1MC3 LINE L1 -26 7759 7458 3 1013 182 118 29 0 chr9 56192107 56192141 -67884031 + (TATG)n Simple_repeat Simple_repeat 4 38 0 3 1013 216 346 118 10 chr9 56192175 56192277 -67883895 - PB1D7 SINE Alu -5 115 3 3 1013 599 266 14 14 chr9 56192277 56192364 -67883808 - B4 SINE B4 -205 87 1 3 1013 487 335 33 42 chr9 56196314 56196526 -67879646 + B3 SINE B2 3 212 -4 3 1013 237 284 242 0 chr9 56196956 56197051 -67879121 + MIRb SINE MIR 103 220 -48 3 1013 431 241 112 130 chr9 56197723 56197794 -67878378 - B4A SINE B4 -18 274 215 3 1013 1139 14 65 7 chr9 56197794 56197933 -67878239 - B1_Mm SINE Alu 0 147 1 3 1013 431 241 112 130 chr9 56197933 56198138 -67878034 - B4A SINE B4 -78 214 3 3 1013 3753 187 116 48 chr9 56198752 56199740 -67876432 + RMER1B Other Other 6 1061 -5 3 1013 763 256 147 55 chr9 56199905 56200252 -67875920 - MTEa LTR MaLR 0 379 1 3 1013 24 0 0 0 chr9 56200476 56200500 -67875672 + AT_rich Low_complexity Low_complexity 1 24 0 3 1013 234 91 0 0 chr9 56200507 56200540 -67875632 + (TATG)n Simple_repeat Simple_repeat 3 35 0 3 1013 1176 68 7 0 chr9 56200614 56200760 -67875412 + B1_Mm SINE Alu 1 147 0 3 1013 645 278 68 19 chr9 56201200 56201464 -67874708 + B4A SINE B4 1 277 -15 3 1013 637 214 8 33 chr9 56201992 56202113 -67874059 - B3A SINE B2 -80 118 1 3 1013 204 40 0 0 chr9 56202135 56202160 -67874012 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1013 1220 48 0 0 chr9 56202160 56202306 -67873866 - B1_Mus2 SINE Alu 0 147 2 3 1013 758 85 229 0 chr9 56202530 56202648 -67873524 + B1_Mus2 SINE Alu 2 146 -1 3 1013 800 159 13 0 chr9 56202653 56202804 -67873368 + GA-rich Low_complexity Low_complexity 1 153 0 3 1013 1148 43 43 0 chr9 56202885 56203026 -67873146 - B1_Mus2 SINE Alu 0 147 1 3 1013 189 0 0 0 chr9 56203807 56203828 -67872344 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1013 3389 39 12 0 chr9 56203863 56204278 -67871894 + L1Md_F2 LINE L1 6151 6570 -12 3 1013 513 300 20 77 chr9 56205349 56205544 -67870628 - B3A SINE B2 0 198 15 3 1013 323 314 9 19 chr9 56206214 56206321 -67869851 + L2c LINE L2 3282 3387 0 3 1013 557 0 0 0 chr9 56208184 56208254 -67867918 + L1Md_A LINE L1 6513 6582 0 3 1013 479 109 230 56 chr9 56209163 56209289 -67866883 - B1_Mur4 SINE Alu -2 148 1 3 1013 1076 210 5 5 chr9 56209678 56209874 -67866298 + B3 SINE B2 1 196 -20 3 1013 1366 198 53 30 chr9 56210432 56210770 -67865402 - Lx9 LINE L1 -821 6823 6478 3 1013 210 37 0 0 chr9 56212902 56212929 -67863243 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1013 1014 40 0 0 chr9 56213047 56213173 -67862999 - B1_Mm SINE Alu 0 147 22 3 1013 351 194 42 0 chr9 56213171 56213243 -67862929 + PB1D9 SINE Alu 41 115 -5 3 1013 542 237 63 21 chr9 56213294 56213436 -67862736 + RSINE1 SINE B4 5 152 -13 3 1013 611 143 0 0 chr9 56213547 56213638 -67862534 + B3 SINE B2 1 91 -125 3 1013 411 182 102 0 chr9 56213635 56213723 -67862449 + Tigger5 DNA MER2_type 2187 2283 -123 3 1013 974 284 51 45 chr9 56213749 56214255 -67861917 - L1M4 LINE L1 -907 5239 4731 3 1013 558 283 57 94 chr9 56214282 56214524 -67861648 - B4 SINE B4 0 292 70 3 1013 2174 157 102 0 chr9 56214524 56214906 -67861266 - MTC LTR MaLR 0 421 1 3 1013 558 296 79 79 chr9 56214906 56214973 -67861199 - B4 SINE B4 -223 69 3 3 1013 776 261 189 38 chr9 56214973 56215728 -67860444 - L1M4 LINE L1 -1394 4752 3867 3 1013 22 0 0 0 chr9 56215808 56215830 -67860342 + AT_rich Low_complexity Low_complexity 1 22 0 3 1013 603 291 77 23 chr9 56216119 56216379 -67859793 + B4A SINE B4 1 274 -18 3 1013 247 275 26 119 chr9 56217379 56217518 -67858654 - B1_Mm SINE Alu -13 135 6 3 1013 1283 151 27 0 chr9 56217568 56217753 -67858419 - URR1A DNA MER1_type -1 225 40 3 1013 237 65 0 0 chr9 56217753 56217784 -67858388 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1013 1283 151 27 0 chr9 56217784 56217817 -67858355 - URR1A DNA MER1_type -187 39 2 3 1013 21 36 0 0 chr9 56217983 56218011 -67858161 + AT_rich Low_complexity Low_complexity 1 28 0 3 1013 610 172 189 0 chr9 56218951 56219073 -67857099 + B1_Mur4 SINE Alu 1 145 -5 3 1013 644 295 111 36 chr9 56220115 56220449 -67855723 + MER76 LTR ERVL 94 452 -239 3 1013 354 200 0 0 chr9 56220571 56220646 -67855526 + L1MB7 LINE L1 5785 5859 -325 3 1013 456 293 0 0 chr9 56220743 56220883 -67855289 + L1MB7 LINE L1 6034 6173 -11 3 1013 602 260 42 42 chr9 56221161 56221378 -67854794 - ID_B1 SINE B4 -5 219 3 3 1013 380 281 30 38 chr9 56221708 56221841 -67854331 + B1_Mur1 SINE Alu 5 136 -13 3 1013 30 0 0 0 chr9 56221848 56221878 -67854294 + AT_rich Low_complexity Low_complexity 1 30 0 3 1013 1186 183 220 7 chr9 56222428 56222714 -67853458 + MTD LTR MaLR 1 347 -72 3 1013 375 212 0 14 chr9 56222793 56222878 -67853294 - ID4_ SINE ID -66 86 3 3 1013 662 310 70 55 chr9 56222918 56223174 -67852998 - B4A SINE B4 0 292 33 3 1013 251 247 0 162 chr9 56223076 56223187 -67852985 - B3A SINE B2 -81 117 25 3 1013 180 77 0 0 chr9 56223287 56223313 -67852859 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1013 28 0 0 0 chr9 56223358 56223386 -67852786 + AT_rich Low_complexity Low_complexity 1 28 0 3 1013 465 276 94 0 chr9 56223551 56223678 -67852494 + RSINE1 SINE B4 8 146 -19 4 1013 249 33 0 0 chr9 56223709 56223739 -67852433 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1013 212 171 24 0 chr9 56223986 56224027 -67852145 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 4 1013 373 185 12 24 chr9 56224037 56224120 -67852052 + MLT1I LTR MaLR 328 409 -2 4 1013 365 344 48 0 chr9 56224313 56224438 -67851734 + B4A SINE B4 30 160 -132 4 1013 2835 231 118 37 chr9 56224650 56225565 -67850607 + Lx8 LINE L1 6101 7089 -384 4 1013 277 186 77 4 chr9 56225567 56225656 -67850516 - B3A SINE B2 -89 104 14 4 1013 973 196 85 5 chr9 56226072 56226272 -67849900 + B3 SINE B2 1 216 0 4 1013 1601 226 28 20 chr9 56226615 56227179 -67848993 + L1_Mur3 LINE L1 860 1430 -4450 4 1013 774 215 7 0 chr9 56227183 56227332 -67848840 + B1_Mur4 SINE Alu 1 150 0 4 1013 1181 179 108 26 chr9 56227341 56227685 -67848487 + L1_Mur3 LINE L1 1430 1801 -4079 4 1013 1473 146 67 232 chr9 56227866 56228302 -67847870 + ORR1B2 LTR MaLR 1 364 -3 4 1013 777 216 7 0 chr9 56229292 56229431 -67846741 + B1_Mur3 SINE Alu 1 140 -9 4 1013 570 190 0 0 chr9 56229444 56229560 -67846612 + GA-rich Low_complexity Low_complexity 2 117 0 4 126 2233 133 41 79 chr9 56229648 56229972 -67846200 - MTC LTR MaLR 0 421 112 4 1014 1122 215 5 5 chr9 56229972 56230196 -67845976 + URR1B DNA MER1_type 1 224 -1 4 1014 2233 133 41 79 chr9 56230196 56230288 -67845884 - MTC LTR MaLR -310 111 21 4 1014 1104 174 56 5 chr9 56230341 56230554 -67845618 + URR1A DNA MER1_type 3 226 0 4 1014 1406 89 16 0 chr9 56231189 56231380 -67844792 - B2_Mm2 SINE B2 0 195 2 4 1014 1490 214 65 14 chr9 56231458 56231814 -67844358 + ORR1D1 LTR MaLR 1 374 0 4 1014 573 173 106 0 chr9 56232049 56232153 -67844019 + B1_Mur1 SINE Alu 25 139 -10 4 1014 228 111 0 0 chr9 56232154 56232190 -67843982 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 4 1014 247 287 56 0 chr9 56232353 56232461 -67843711 - L1MA4 LINE L1 -364 5936 5823 4 1014 887 152 14 0 chr9 56233216 56233354 -67842818 - B1_Mus1 SINE Alu -6 142 3 4 1014 21 0 0 0 chr9 56233645 56233666 -67842506 + AT_rich Low_complexity Low_complexity 1 21 0 4 1014 866 176 7 14 chr9 56233851 56233995 -67842177 - B1_Mur2 SINE Alu -1 148 6 4 1014 800 286 30 30 chr9 56234135 56234333 -67841839 - B3A SINE B2 0 198 1 4 1014 1615 257 68 26 chr9 56234333 56234864 -67841308 + Lx8 LINE L1 6116 6668 -805 4 1014 901 151 7 0 chr9 56235131 56235270 -67840902 - B1_Mur2 SINE Alu -9 140 1 4 1014 34 24 0 0 chr9 56235339 56235380 -67840792 + AT_rich Low_complexity Low_complexity 1 41 0 4 1014 599 243 154 17 chr9 56235689 56235854 -67840318 + B3A SINE B2 1 182 -16 4 1014 552 68 0 0 chr9 56235854 56235927 -67840245 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1014 289 275 78 136 chr9 56235927 56235967 -67840205 + B2_Mm2 SINE B2 162 194 -1 4 1014 445 274 0 70 chr9 56236631 56236745 -67839427 - ID_B1 SINE B4 -117 107 2 4 1014 317 337 0 19 chr9 56237669 56237775 -67838397 + B1F1 SINE Alu 1 104 -45 4 1014 2190 150 20 55 chr9 56237969 56238372 -67837800 + Lx2 LINE L1 6607 6995 -2 4 1014 238 130 43 0 chr9 56238432 56238478 -67837694 + MTE2b LTR MaLR 1 48 -331 4 1014 572 101 0 11 chr9 56238486 56238576 -67837596 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 4 1014 1173 247 71 20 chr9 56238580 56238877 -67837295 + MTE2b LTR MaLR 55 366 -13 4 1014 217 322 51 139 chr9 56239076 56239116 -67837056 + B4 SINE B4 62 165 -127 4 1014 403 292 0 22 chr9 56239116 56239207 -67836965 + PB1D10 SINE Alu 1 89 -28 4 1014 374 39 19 0 chr9 56239221 56239273 -67836899 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1014 581 243 185 34 chr9 56239792 56240059 -67836113 + Tigger7 DNA MER2_type 107 430 -2061 4 1014 1968 189 48 15 chr9 56240134 56240527 -67835645 + MTC LTR MaLR 16 421 0 4 1014 305 304 130 11 chr9 56241479 56241628 -67834544 + MIRc SINE MIR 1 160 -108 4 1014 676 210 50 14 chr9 56242434 56242574 -67833598 - B1F SINE Alu -4 145 1 4 1014 754 196 0 14 chr9 56242671 56242816 -67833356 + B1_Mus2 SINE Alu 5 147 0 4 1014 632 203 177 22 chr9 56242898 56243079 -67833093 - B3 SINE B2 -7 209 1 4 1014 22 0 0 0 chr9 56243229 56243251 -67832921 + AT_rich Low_complexity Low_complexity 1 22 0 4 1014 354 208 228 24 chr9 56243560 56243683 -67832489 + B1F SINE Alu 2 149 0 4 1014 446 216 102 80 chr9 56243882 56244058 -67832114 + B4A SINE B4 112 291 -1 4 1014 24 0 0 0 chr9 56244158 56244182 -67831990 + AT_rich Low_complexity Low_complexity 1 24 0 4 1014 291 289 48 0 chr9 56244945 56245028 -67831144 + MTEb LTR MaLR 10 96 -283 4 1014 669 206 22 7 chr9 56245103 56245240 -67830932 - B1_Mur2 SINE Alu -9 140 2 4 1014 1228 204 89 39 chr9 56245244 56245525 -67830647 + MTEb LTR MaLR 85 379 0 4 1014 780 215 106 15 chr9 56245647 56245845 -67830327 - B3 SINE B2 0 216 1 4 1014 324 325 42 0 chr9 56246063 56246183 -67829989 + MIR SINE MIR 44 168 -94 4 1014 383 241 62 9 chr9 56246316 56246429 -67829743 + PB1D9 SINE Alu 2 120 0 4 1014 957 274 99 0 chr9 56246639 56246891 -67829281 + B4A SINE B4 9 285 -7 4 1014 546 224 36 36 chr9 56247070 56247209 -67828963 - B1F SINE Alu -10 139 1 4 1014 304 264 110 0 chr9 56247277 56247368 -67828804 - MIR SINE MIR -24 238 138 4 1014 290 228 0 66 chr9 56247909 56247970 -67828202 + ID4_ SINE ID 26 82 -1 4 1014 492 299 127 0 chr9 56248009 56248206 -67827966 - MIR SINE MIR -13 249 28 4 1014 302 254 0 29 chr9 56248348 56248417 -67827755 + PB1D9 SINE Alu 32 98 -22 4 1014 527 305 105 69 chr9 56248355 56248689 -67827483 + MT2B LTR ERVL 195 540 -61 4 1014 195 167 0 0 chr9 56248689 56248731 -67827441 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 4 1014 541 255 152 16 chr9 56248731 56248922 -67827250 + MTE2b LTR MaLR 16 232 -147 4 1014 554 297 160 27 chr9 56249501 56249757 -67826415 - B4A SINE B4 0 292 3 4 1014 302 238 0 70 chr9 56249757 56249838 -67826334 - PB1D10 SINE Alu -41 76 2 4 1014 313 292 22 169 chr9 56250024 56250160 -67826012 + PB1D10 SINE Alu 1 116 -1 4 1014 948 236 0 35 chr9 56250291 56250489 -67825683 - B3 SINE B2 -25 191 1 4 1014 255 271 125 34 chr9 56250528 56250616 -67825556 - PB1D10 SINE Alu -7 110 15 4 1014 457 187 112 0 chr9 56251141 56251248 -67824924 + MER33 DNA MER1_type 23 141 -183 4 1014 670 255 56 0 chr9 56252006 56252167 -67824005 + B3A SINE B2 4 173 -25 4 1014 409 211 0 0 chr9 56252173 56252249 -67823923 - B1F SINE Alu -50 99 24 4 1014 642 149 98 63 chr9 56252275 56252418 -67823754 + B1_Mur4 SINE Alu 2 149 -1 4 1014 311 327 157 6 chr9 56253811 56253977 -67822195 - MIR SINE MIR -59 203 13 4 1014 25 0 0 0 chr9 56254753 56254778 -67821394 + AT_rich Low_complexity Low_complexity 1 25 0 4 1014 924 223 9 23 chr9 56254926 56255142 -67821030 + B3 SINE B2 2 214 -2 4 1014 485 300 5 46 chr9 56255355 56255383 -67820789 - ID_B1 SINE B4 -46 246 158 4 1014 750 174 0 0 chr9 56255383 56255504 -67820668 - B1_Mur1 SINE Alu -10 139 19 4 1014 485 300 5 46 chr9 56255504 56255526 -67820646 - ID_B1 SINE B4 -46 157 80 4 1014 291 311 232 33 chr9 56255795 56255940 -67820232 + L2a LINE L2 2245 2418 -1001 4 1014 562 228 88 7 chr9 56255940 56256077 -67820095 + B1_Mur2 SINE Alu 1 148 -1 4 1014 291 311 232 33 chr9 56256077 56256263 -67819909 + L2a LINE L2 2419 2642 -777 4 1014 758 236 209 0 chr9 56256343 56256639 -67819533 + L1MD3 LINE L1 6685 7042 -953 4 1014 1146 147 55 20 chr9 56256672 56256873 -67819299 + B3 SINE B2 8 215 -1 4 1014 359 248 27 9 chr9 56256889 56256999 -67819173 + L1MD3 LINE L1 7116 7227 -655 4 1014 581 234 46 15 chr9 56257032 56257162 -67819010 + B1F2 SINE Alu 2 135 -14 4 1014 180 0 0 0 chr9 56257162 56257182 -67818990 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 4 1014 468 274 35 0 chr9 56257214 56257327 -67818845 + RSINE1 SINE B4 1 117 -48 4 1014 957 214 88 0 chr9 56257330 56257522 -67818650 + B3 SINE B2 2 210 -6 4 1014 236 278 0 85 chr9 56257544 56257603 -67818569 + RSINE1 SINE B4 108 161 -4 4 1014 30 27 0 0 chr9 56257603 56257640 -67818532 + AT_rich Low_complexity Low_complexity 1 37 0 4 1014 303 273 13 25 chr9 56257730 56257809 -67818363 - B4A SINE B4 -5 287 210 4 1014 445 298 123 9 chr9 56257837 56258057 -67818115 + L1MC LINE L1 5101 5345 -801 4 1014 572 259 95 95 chr9 56258058 56258301 -67817871 - B4 SINE B4 -49 243 1 4 1014 247 188 130 40 chr9 56258301 56258401 -67817771 + L1MD3 LINE L1 7526 7634 -248 4 1014 359 266 21 0 chr9 56258577 56258671 -67817501 - MER20 DNA MER1_type 0 219 124 4 1014 490 205 0 0 chr9 56258806 56258889 -67817283 - ID4 SINE ID 0 83 1 4 1014 634 189 74 22 chr9 56258916 56259051 -67817121 - B1_Mur1 SINE Alu -7 142 1 4 1014 379 308 39 0 chr9 56259252 56259356 -67816816 + RSINE1 SINE B4 4 111 -54 4 1014 391 268 9 35 chr9 56259410 56259526 -67816646 + PB1D10 SINE Alu 3 115 -2 4 1014 216 309 24 24 chr9 56259614 56259697 -67816475 + L2a LINE L2 3338 3420 -6 4 1014 210 188 104 0 chr9 56259798 56259846 -67816326 + MIRc SINE MIR 104 156 -112 4 1014 353 184 39 13 chr9 56260601 56260678 -67815494 + MT2A LTR ERVL 1 79 -454 4 1014 1060 158 93 10 chr9 56260654 56260859 -67815313 + MTC LTR MaLR 200 421 0 4 1014 226 337 0 22 chr9 56260905 56260996 -67815176 + CT-rich Low_complexity Low_complexity 3 91 0 4 1014 256 298 119 0 chr9 56261135 56261219 -67814953 + MT2A LTR ERVL 165 258 -343 4 1014 300 167 50 0 chr9 56261154 56261214 -67814958 + ID_B1 SINE B4 116 178 -46 4 1014 239 234 78 0 chr9 56261214 56261231 -67814941 + PB1D10 SINE Alu 35 117 0 4 1014 274 58 0 55 chr9 56261231 56261286 -67814886 + (CAAAAA)n Simple_repeat Simple_repeat 5 56 0 4 1014 972 48 0 45 chr9 56261315 56261431 -67814741 + B1_Mm SINE Alu 22 137 -10 5 1014 207 0 0 0 chr9 56261431 56261454 -67814718 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1014 972 48 0 45 chr9 56261454 56261469 -67814703 + B1_Mm SINE Alu 138 147 0 5 1014 230 243 116 45 chr9 56261598 56261710 -67814462 + L2 LINE L2 2035 2154 -1265 5 1014 503 301 28 0 chr9 56261896 56262039 -67814133 - RSINE1 SINE B4 -17 148 2 5 1014 688 167 335 13 chr9 56262288 56262446 -67813726 - B3 SINE B2 -6 210 2 5 1014 391 264 24 16 chr9 56262579 56262702 -67813470 + MER33 DNA MER1_type 44 167 -157 5 1014 225 196 0 0 chr9 56264588 56264634 -67811538 + A-rich Low_complexity Low_complexity 2 47 0 5 1014 1892 184 204 11 chr9 56268067 56268615 -67807557 + Lx7 LINE L1 7039 7692 -4 5 1014 258 225 0 145 chr9 56268637 56268720 -67807452 + ID4 SINE ID 3 73 -10 5 1014 186 103 0 0 chr9 56268721 56268750 -67807422 + (CAAAAA)n Simple_repeat Simple_repeat 5 33 0 5 1014 854 136 8 0 chr9 56268767 56268899 -67807273 + B1_Mur1 SINE Alu 10 142 -7 5 1014 188 279 183 0 chr9 56270146 56270250 -67805922 - L2a LINE L2 -1 3425 3303 5 1014 197 365 47 28 chr9 56270449 56270556 -67805616 + MIR SINE MIR 13 121 -141 5 1014 295 244 51 0 chr9 56271847 56271925 -67804247 - L1MA4 LINE L1 -1571 5902 5821 5 1014 644 230 44 0 chr9 56272051 56272186 -67803986 - B1_Mur1 SINE Alu -8 141 1 5 1014 198 0 0 0 chr9 56272202 56272224 -67803948 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1014 568 211 48 33 chr9 56272321 56272543 -67803629 - L1MA4 LINE L1 -322 5849 5537 5 1014 665 243 102 99 chr9 56272563 56272846 -67803326 - B4A SINE B4 0 292 9 5 1014 977 230 80 111 chr9 56272841 56273193 -67802979 - MTE2a LTR MaLR -13 366 26 5 1014 232 273 52 0 chr9 56273197 56273274 -67802898 - L1_Mur3 LINE L1 -402 5478 5398 5 1014 690 251 19 7 chr9 56273280 56273440 -67802732 - B3 SINE B2 -4 194 30 5 1014 498 295 15 5 chr9 56273462 56273686 -67802486 - L1MA4 LINE L1 -765 5419 5190 5 1014 564 278 11 0 chr9 56273696 56273876 -67802296 - L1_Mur3 LINE L1 -1717 4163 3982 5 1014 954 129 0 0 chr9 56273930 56274070 -67802102 - B1_Mur3 SINE Alu -1 148 9 5 1014 567 252 20 39 chr9 56273935 56274088 -67802084 - ID_B1 SINE B4 -6 218 69 5 1014 463 291 39 23 chr9 56274248 56274378 -67801794 - RSINE1 SINE B4 -30 135 4 5 1014 740 289 86 44 chr9 56274379 56274951 -67801221 - L1MA4 LINE L1 -2357 3786 3191 5 1014 277 214 97 18 chr9 56275006 56275120 -67801052 - L1MA4 LINE L1 -3286 2857 2735 5 1014 628 151 19 0 chr9 56275130 56275236 -67800936 + B1_Mur3 SINE Alu 42 149 0 5 1014 294 246 24 73 chr9 56275241 56275364 -67800808 - L1_Rod LINE L1 -3118 2729 2613 5 1014 297 250 110 9 chr9 56275400 56275509 -67800663 - PB1D9 SINE Alu 0 120 1 5 1014 387 306 64 43 chr9 56275583 56275723 -67800449 + B1F SINE Alu 1 143 -6 5 1014 676 124 36 0 chr9 56275726 56275863 -67800309 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 5 1014 390 310 77 23 chr9 56275867 56276177 -67799995 - L1MA4 LINE L1 -3585 2558 2232 5 1014 264 122 0 0 chr9 56276197 56276238 -67799934 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 5 1014 636 280 30 0 chr9 56276744 56276876 -67799296 - RSINE1 SINE B4 -28 137 2 5 1014 3567 15 0 0 chr9 56277157 56277553 -67798619 + MTA_Mm LTR MaLR 1 396 0 5 1014 9301 36 2 1 chr9 56277553 56278650 -67797522 + MTA_Mm-int LTR MaLR 1 1098 0 5 1014 3615 15 0 0 chr9 56278650 56279046 -67797126 + MTA_Mm LTR MaLR 1 396 0 5 1014 635 311 35 52 chr9 56279463 56279694 -67796478 + B4A SINE B4 64 290 -2 5 1014 481 320 46 0 chr9 56280087 56280240 -67795932 + RSINE1 SINE B4 2 161 -4 5 1014 884 257 145 15 chr9 56280536 56280868 -67795304 - MTE2b LTR MaLR -4 375 1 5 1014 255 256 12 0 chr9 56281002 56281088 -67795084 + MLT1D LTR MaLR 419 505 0 5 1014 701 246 154 9 chr9 56281165 56281489 -67794683 + L1ME3A LINE L1 2938 3308 -2838 5 1014 358 244 164 10 chr9 56281596 56281803 -67794369 + L1ME3A LINE L1 3312 3550 -2596 5 1014 261 209 10 104 chr9 56281807 56281903 -67794269 + MT2B LTR ERVL 155 241 -360 5 1014 620 159 0 34 chr9 56281823 56281940 -67794232 + PB1D9 SINE Alu 8 120 0 5 1014 877 111 0 0 chr9 56282069 56282195 -67793977 - B1_Mm SINE Alu -3 144 19 5 1014 566 289 91 69 chr9 56282257 56282462 -67793710 + L1ME3A LINE L1 5270 5490 -672 5 1014 507 278 35 7 chr9 56282462 56282607 -67793565 + B1F1 SINE Alu 1 149 0 5 1014 566 288 91 76 chr9 56282607 56282841 -67793331 + L1ME3A LINE L1 5491 5708 -454 5 1014 387 291 114 28 chr9 56282917 56283171 -67793001 + L1ME3A LINE L1 5873 6148 -25 5 1014 203 312 207 12 chr9 56283448 56283704 -67792468 + L2 LINE L2 2178 2483 -936 5 1014 575 202 49 28 chr9 56283757 56283899 -67792273 + RSINE1 SINE B4 12 158 -7 5 1014 761 263 111 0 chr9 56283931 56284121 -67792051 - B3 SINE B2 -5 211 1 5 1014 418 221 155 14 chr9 56284254 56284396 -67791776 + L2 LINE L2 2665 2826 -593 5 1014 387 226 36 0 chr9 56284403 56284487 -67791685 + RSINE1 SINE B4 11 97 -68 5 1014 1919 70 4 0 chr9 56284509 56284751 -67791421 - L1_Mus1 LINE L1 -4 6563 6321 5 1014 492 18 0 0 chr9 56284866 56284923 -67791249 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1014 183 359 125 0 chr9 56285143 56285207 -67790965 + L2b LINE L2 3266 3337 -38 5 1014 23 0 0 0 chr9 56285343 56285366 -67790806 + GC_rich Low_complexity Low_complexity 1 23 0 5 1014 23 33 0 0 chr9 56285383 56285413 -67790759 + GC_rich Low_complexity Low_complexity 1 30 0 5 1014 258 32 0 0 chr9 56286232 56286263 -67789909 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1014 1603 304 78 95 chr9 56286925 56287306 -67788866 - L1MA5 LINE L1 -1490 6154 5769 5 1014 1110 103 7 0 chr9 56287306 56287452 -67788720 + B1_Mm SINE Alu 1 147 0 5 1014 1603 245 91 74 chr9 56287452 56287967 -67788205 - L1MA5 LINE L1 -499 5801 5298 5 1014 752 232 52 0 chr9 56288125 56288319 -67787853 - B3 SINE B2 -5 211 8 5 1014 1419 66 28 0 chr9 56288336 56288517 -67787655 - B2_Mm1a SINE B2 -7 186 1 5 1014 768 186 64 0 chr9 56289580 56289720 -67786452 + B1_Mur3 SINE Alu 1 149 0 5 1014 721 103 338 0 chr9 56289723 56289868 -67786304 + B2_Mm2 SINE B2 1 194 -1 5 1014 214 316 18 0 chr9 56289931 56289988 -67786184 - ID SINE ID -142 82 25 5 1014 226 342 14 0 chr9 56290013 56290086 -67786086 - PB1D10 SINE Alu -8 109 36 5 1014 592 299 38 0 chr9 56290239 56290396 -67785776 + RSINE1 SINE B4 3 165 0 5 1014 696 234 42 0 chr9 56290665 56290832 -67785340 + B4A SINE B4 3 176 -116 5 1014 267 54 0 0 chr9 56290933 56290970 -67785202 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1014 273 119 0 0 chr9 56291811 56291853 -67784319 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1014 473 241 68 47 chr9 56291853 56292001 -67784171 - RSINE1 SINE B4 -11 154 4 5 1014 49 32 0 0 chr9 56292017 56292080 -67784092 + AT_rich Low_complexity Low_complexity 1 63 0 5 1014 1013 109 236 0 chr9 56292087 56292261 -67783911 + B3 SINE B2 2 216 0 5 1014 24 32 0 0 chr9 56292384 56292415 -67783757 + AT_rich Low_complexity Low_complexity 1 31 0 5 1014 6873 196 86 29 chr9 56292639 56293834 -67782338 - Lx6 LINE L1 -160 7536 5975 5 1014 3375 45 0 2 chr9 56293834 56294231 -67781941 - MTA_Mm LTR MaLR 0 396 1 5 1014 6873 196 85 30 chr9 56294231 56294369 -67781803 - Lx6 LINE L1 -1486 5974 5839 5 1014 1400 70 16 5 chr9 56294369 56294556 -67781616 - B2_Mm2 SINE B2 -6 189 1 5 1014 6873 196 85 30 chr9 56294556 56294735 -67781437 - Lx6 LINE L1 -1622 5838 5665 5 1014 2592 142 112 12 chr9 56294741 56295240 -67780932 + RMER4B LTR ERVK 37 585 0 5 1014 7283 123 27 4 chr9 56295240 56296384 -67779788 - Lx6 LINE L1 -205 5675 4506 5 1014 210 109 239 0 chr9 56296735 56296781 -67779391 - BC1_Mm scRNA scRNA -95 57 1 5 1014 1276 27 0 0 chr9 56296820 56296967 -67779205 - B1_Mm SINE Alu 0 147 1 5 1014 362 198 52 43 chr9 56297033 56297149 -67779023 + B1F SINE Alu 26 142 -7 5 1014 821 224 14 55 chr9 56297943 56298160 -67778012 + B4 SINE B4 2 209 -83 5 1014 335 304 70 61 chr9 56298205 56298499 -67777673 + B4 SINE B4 5 274 -18 5 1014 1130 176 24 5 chr9 56298566 56298777 -67777395 + B3 SINE B2 1 215 -1 5 1014 791 220 53 42 chr9 56298781 56298971 -67777201 - B3A SINE B2 -6 192 1 5 1014 1652 31 0 25 chr9 56299106 56299304 -67776868 + B2_Mm1a SINE B2 1 193 0 5 1014 813 274 18 14 chr9 56299979 56300201 -67775971 + ID_B1 SINE B4 1 223 -1 5 1014 1220 41 0 0 chr9 56300227 56300374 -67775798 - B1_Mm SINE Alu 0 147 1 5 1014 379 155 0 17 chr9 56300565 56300624 -67775548 + Lx2A1 LINE L1 6702 6759 -249 5 1014 288 130 0 0 chr9 56300630 56300676 -67775496 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1014 1687 102 0 4 chr9 56300676 56300932 -67775240 + Lx2A1 LINE L1 6754 7008 0 5 1014 264 219 51 110 chr9 56301588 56301706 -67774466 - L1ME2 LINE L1 -136 6028 5918 5 1014 380 227 4 0 chr9 56301742 56301821 -67774351 - PB1D10 SINE Alu -37 112 31 5 1014 297 0 0 0 chr9 56301972 56302005 -67774167 + (GGGGA)n Simple_repeat Simple_repeat 1 33 0 5 1014 649 247 13 20 chr9 56302148 56302297 -67773875 - B1_Mur1 SINE Alu 0 149 2 5 1014 306 73 0 0 chr9 56302330 56302371 -67773801 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1014 468 278 50 64 chr9 56302371 56302412 -67773760 + MTE2a LTR MaLR 20 62 -357 5 1014 704 158 0 50 chr9 56302412 56302532 -67773640 - PB1D9 SINE Alu -5 115 2 5 1014 553 249 30 22 chr9 56302532 56302709 -67773463 + MTE2a LTR MaLR 58 234 -185 5 1014 297 214 0 0 chr9 56302778 56302834 -67773338 + MTE2a LTR MaLR 291 346 -13 5 1014 344 260 26 0 chr9 56303107 56303184 -67772988 - B3A SINE B2 -119 79 1 5 1014 22 70 0 0 chr9 56303238 56303281 -67772891 + AT_rich Low_complexity Low_complexity 1 43 0 5 1014 26 0 0 0 chr9 56303582 56303608 -67772564 + AT_rich Low_complexity Low_complexity 1 26 0 5 1014 240 59 0 0 chr9 56303901 56303935 -67772237 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1014 242 262 33 87 chr9 56304099 56304191 -67771981 - PB1D7 SINE Alu -12 108 22 5 1014 315 240 93 28 chr9 56304164 56304271 -67771901 - ID_B1 SINE B4 -95 129 16 5 1014 331 266 54 69 chr9 56305358 56305469 -67770703 - B1F1 SINE Alu 0 120 7 5 1014 269 290 16 0 chr9 56305415 56305477 -67770695 - ID_B1 SINE B4 -83 141 79 5 1014 707 216 83 29 chr9 56305523 56305728 -67770444 + B3 SINE B2 1 216 0 5 1014 184 0 62 31 chr9 56305820 56305852 -67770320 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 5 1014 615 191 101 22 chr9 56305854 56305993 -67770179 - B1_Mur4 SINE Alu 0 150 1 6 1014 752 279 9 18 chr9 56305997 56306220 -67769952 - ID_B1 SINE B4 -2 222 2 6 1014 2422 107 0 11 chr9 56306229 56306578 -67769594 - L1_Mus4 LINE L1 -50 6586 6242 6 1014 343 293 234 3 chr9 56307468 56307844 -67768328 + L2a LINE L2 2620 3082 -337 6 1014 258 270 156 16 chr9 56307953 56308081 -67768091 + L2a LINE L2 3281 3426 0 6 1014 532 254 0 35 chr9 56308255 56308398 -67767774 - ID_B1 SINE B4 0 224 87 6 1014 833 228 44 15 chr9 56308424 56308629 -67767543 - B3 SINE B2 -5 211 1 6 1014 221 254 16 16 chr9 56308662 56308726 -67767446 - B1F1 SINE Alu -58 91 28 6 1014 503 293 24 70 chr9 56308935 56309148 -67767024 + Tigger13a DNA MER2_type 15 217 -554 6 1014 2693 225 167 24 chr9 56309197 56310224 -67765948 - L1MC1 LINE L1 0 6333 5161 6 1014 384 206 96 30 chr9 56310227 56310362 -67765810 - L1MC1 LINE L1 -3799 2347 2204 6 1014 297 306 59 0 chr9 56310397 56310482 -67765690 - RSINE1 SINE B4 -1 164 75 6 1014 292 353 35 0 chr9 56310636 56310752 -67765420 - RSINE1 SINE B4 -14 151 32 6 1014 465 242 115 24 chr9 56310892 56311057 -67765115 - B4A SINE B4 -4 288 109 6 1014 4261 130 28 23 chr9 56313771 56314479 -67761693 + Lx LINE L1 5937 6648 -6 6 1014 561 301 33 75 chr9 56314637 56314942 -67761230 - B4A SINE B4 0 292 1 6 1014 306 273 22 43 chr9 56315660 56315798 -67760374 - B4A SINE B4 -113 179 45 6 1014 782 175 142 37 chr9 56315865 56316055 -67760117 + B3 SINE B2 1 210 -6 6 1014 266 0 29 0 chr9 56316262 56316296 -67759876 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1014 726 206 15 0 chr9 56316296 56316432 -67759740 - B1_Mus2 SINE Alu -9 138 1 6 1014 550 219 18 0 chr9 56316698 56316812 -67759360 + PB1D9 SINE Alu 2 117 -3 6 1014 657 233 7 20 chr9 56316901 56317050 -67759122 - B1F SINE Alu -2 147 1 6 1014 187 372 75 51 chr9 56317134 56317389 -67758783 - L2a LINE L2 -205 3221 2961 6 1014 311 248 155 26 chr9 56317433 56317549 -67758623 - MER5A1 DNA MER1_type -35 131 1 6 1014 217 285 124 7 chr9 56317595 56317740 -67758432 - L2a LINE L2 -569 2850 2689 6 1014 218 319 0 28 chr9 56317745 56317816 -67758356 - L2 LINE L2 -1411 2008 1940 6 1014 678 314 134 63 chr9 56317816 56318243 -67757929 - L2a LINE L2 -731 2688 2214 6 1014 239 179 0 0 chr9 56318243 56318282 -67757890 - L1MCb LINE L1 -5837 208 170 6 1014 678 314 134 63 chr9 56318282 56318812 -67757360 - L2a LINE L2 -731 2213 1622 6 1014 863 225 107 0 chr9 56319078 56319265 -67756907 - B3 SINE B2 -8 208 2 6 1014 778 176 6 75 chr9 56319591 56319618 -67756554 - B1_Mur1 SINE Alu 0 149 127 6 1014 1350 84 21 21 chr9 56319618 56319812 -67756360 + B2_Mm2 SINE B2 1 194 -1 6 1014 778 176 6 75 chr9 56319812 56319944 -67756228 - B1_Mur1 SINE Alu -23 126 1 6 1014 1978 260 66 134 chr9 56320222 56321035 -67755137 - Lx5 LINE L1 -75 6975 6218 6 1014 182 37 37 0 chr9 56321830 56321857 -67754315 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 6 1014 293 43 43 0 chr9 56323669 56323715 -67752457 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 6 1014 608 203 55 0 chr9 56323717 56323845 -67752327 - B1_Mus2 SINE Alu -12 135 1 6 1014 649 210 7 21 chr9 56324352 56324493 -67751679 + B1F SINE Alu 11 149 0 6 1014 1334 147 4 51 chr9 56324540 56324777 -67751395 - URR1A DNA MER1_type 0 226 1 6 1014 435 267 116 58 chr9 56325261 56325416 -67750756 + B3A SINE B2 1 164 -34 6 1014 180 0 0 0 chr9 56325423 56325443 -67750729 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1014 271 343 29 19 chr9 56325506 56325610 -67750562 + B1F1 SINE Alu 12 116 -33 6 1014 264 307 39 19 chr9 56325534 56325637 -67750535 + ID_B1 SINE B4 119 223 -1 6 1014 290 296 154 10 chr9 56325895 56326096 -67750076 + MLT1C LTR MaLR 87 316 -151 6 1014 469 227 201 51 chr9 56327045 56327259 -67748913 - L1MC4 LINE L1 0 8042 7797 6 1014 372 172 168 21 chr9 56327859 56327954 -67748218 + B1_Mur2 SINE Alu 29 137 -12 6 1014 236 286 0 0 chr9 56327997 56328046 -67748126 + PB1D9 SINE Alu 1 49 -71 6 1014 504 154 32 1 chr9 56328245 56328366 -67747806 - B1_Mus2 SINE Alu -4 145 20 6 1014 248 214 19 67 chr9 56328456 56328561 -67747611 - L1MC4 LINE L1 -833 7049 6950 6 1014 394 302 94 0 chr9 56329056 56329205 -67746967 - RSINE1 SINE B4 0 165 3 6 1014 205 320 50 40 chr9 56329928 56330029 -67746143 - L2b LINE L2 -8 3367 3266 6 1014 432 0 0 0 chr9 56330474 56330522 -67745650 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1014 508 258 170 29 chr9 56331704 56331937 -67744235 + B4 SINE B4 9 274 -18 6 1014 1180 176 50 5 chr9 56332196 56332396 -67743776 + B3 SINE B2 1 209 -7 6 1014 1021 130 0 20 chr9 56332424 56332573 -67743599 + B1_Mus2 SINE Alu 1 146 -1 6 1014 719 153 8 0 chr9 56332573 56332704 -67743468 + (TGGA)n Simple_repeat Simple_repeat 2 133 0 6 1014 324 0 0 0 chr9 56334257 56334293 -67741879 + (TTG)n Simple_repeat Simple_repeat 2 37 0 6 1014 227 217 43 0 chr9 56334361 56334407 -67741765 - PB1D9 SINE Alu -19 101 54 6 1014 207 0 0 0 chr9 56334718 56334741 -67741431 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 6 1014 1181 181 48 10 chr9 56335816 56336023 -67740149 + B3 SINE B2 2 216 0 6 1014 653 212 8 0 chr9 56336794 56336926 -67739246 + B1_Mur2 SINE Alu 17 149 0 6 1014 743 180 71 7 chr9 56336928 56337068 -67739104 + B1_Mur2 SINE Alu 1 149 0 6 1014 210 37 0 0 chr9 56337099 56337126 -67739046 + (GGAAA)n Simple_repeat Simple_repeat 2 28 0 6 1014 317 238 25 12 chr9 56337371 56337452 -67738720 - ORR1D2 LTR MaLR -288 82 1 6 1014 273 230 93 13 chr9 56338293 56338368 -67737804 + MT2B2 LTR ERVL 163 243 -341 6 1014 298 133 0 62 chr9 56338318 56338382 -67737790 + PB1D10 SINE Alu 37 96 -21 6 1014 795 244 60 91 chr9 56338396 56338668 -67737504 + B4 SINE B4 26 290 -2 6 1014 488 277 67 0 chr9 56338694 56338813 -67737359 + B1F2 SINE Alu 21 147 -2 6 1014 654 204 83 8 chr9 56338824 56338957 -67737215 + B1_Mur3 SINE Alu 2 144 -5 6 1014 1498 58 37 0 chr9 56338967 56339155 -67737017 + B2_Mm2 SINE B2 1 195 0 6 1014 904 214 11 6 chr9 56339165 56339339 -67736833 + B3A SINE B2 3 177 -21 6 1014 261 0 0 0 chr9 56339339 56339368 -67736804 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 6 1014 579 212 26 128 chr9 56339368 56339388 -67736784 + B2_Mm2 SINE B2 162 176 -19 6 1014 747 224 0 27 chr9 56339496 56339643 -67736529 - B1_Mur1 SINE Alu -5 144 2 6 1014 698 171 260 17 chr9 56339819 56339992 -67736180 + B3 SINE B2 2 216 0 6 1014 513 32 0 0 chr9 56341085 56341148 -67735024 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1014 188 0 74 0 chr9 56341318 56341345 -67734827 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1014 1209 44 0 0 chr9 56341345 56341482 -67734690 - B1_Mm SINE Alu -10 137 1 6 1014 724 296 0 12 chr9 56341748 56341912 -67734260 - RSINE1 SINE B4 0 165 4 6 1014 189 0 0 0 chr9 56342299 56342320 -67733852 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1014 207 0 0 0 chr9 56343422 56343445 -67732727 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1014 249 308 54 21 chr9 56345317 56345410 -67730762 - MLT1J LTR MaLR -1 511 416 6 1014 198 0 0 0 chr9 56345416 56345438 -67730734 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1014 728 198 118 27 chr9 56346581 56346768 -67729404 + B3 SINE B2 2 205 -11 6 1014 430 252 36 27 chr9 56346872 56346982 -67729190 - B4A SINE B4 -4 288 178 6 1014 258 240 198 10 chr9 56347053 56347154 -67729018 + PB1D9 SINE Alu 1 120 0 6 1014 216 0 0 0 chr9 56347184 56347208 -67728964 + (GGGGA)n Simple_repeat Simple_repeat 3 26 0 6 1014 560 232 50 21 chr9 56347421 56347562 -67728610 + B3 SINE B2 69 213 -3 6 1014 235 45 44 22 chr9 56348173 56348218 -67727954 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 6 1014 457 235 0 38 chr9 56348218 56348316 -67727856 - B1_Mm SINE Alu -7 140 47 6 1014 309 244 12 35 chr9 56348369 56348454 -67727718 - ID_B1 SINE B4 -1 223 141 6 1014 769 188 13 34 chr9 56348660 56348809 -67727363 + B1_Mus2 SINE Alu 2 147 0 6 1014 651 139 104 0 chr9 56349176 56349291 -67726881 + B1_Mur2 SINE Alu 14 140 -9 6 1014 243 279 16 16 chr9 56349506 56349568 -67726604 + ID2 SINE ID 9 70 -13 6 1014 227 229 40 54 chr9 56349568 56349580 -67726592 + B4 SINE B4 8 80 -212 6 1014 252 0 0 0 chr9 56349580 56349608 -67726564 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1014 249 290 39 39 chr9 56349620 56349724 -67726448 - L2 LINE L2 -866 2553 2450 6 1014 733 252 51 42 chr9 56349724 56349939 -67726233 + ID_B1 SINE B4 5 221 -3 6 1014 460 310 49 72 chr9 56351081 56351190 -67724982 - Charlie4a DNA MER1_type -6 502 403 6 1014 667 209 90 0 chr9 56351190 56351324 -67724848 + B1_Mur1 SINE Alu 1 146 -3 6 1014 460 310 49 72 chr9 56351324 56351478 -67724694 - Charlie4a DNA MER1_type -106 402 245 6 1014 529 223 0 26 chr9 56352046 56352161 -67724011 + PB1D9 SINE Alu 1 112 -8 6 1014 207 0 0 0 chr9 56352798 56352821 -67723351 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1014 277 253 27 7 chr9 56354568 56354715 -67721457 + GA-rich Low_complexity Low_complexity 2 151 0 6 1014 261 0 0 0 chr9 56354768 56354797 -67721375 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1014 216 0 0 0 chr9 56354797 56354820 -67721352 + (CG)n Simple_repeat Simple_repeat 2 25 0 6 1014 205 319 76 17 chr9 56355670 56355788 -67720384 + MIRc SINE MIR 63 187 -81 6 1014 478 186 0 11 chr9 56356003 56356090 -67720082 + PB1D10 SINE Alu 32 117 0 6 1014 513 0 0 0 chr9 56356167 56356224 -67719948 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1014 825 194 26 46 chr9 56356226 56356421 -67719751 + B2_Mm2 SINE B2 3 193 -2 7 1014 243 0 0 0 chr9 56356459 56356486 -67719686 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1014 21 36 0 0 chr9 56356553 56356581 -67719591 + GC_rich Low_complexity Low_complexity 1 28 0 7 1014 224 338 12 0 chr9 56356977 56357057 -67719115 + L2b LINE L2 3283 3363 -12 7 1014 193 304 85 31 chr9 56357424 56357553 -67718619 + L2 LINE L2 2347 2482 -937 7 1014 448 298 26 78 chr9 56357652 56357845 -67718327 + B4A SINE B4 42 224 -68 7 1014 216 0 0 0 chr9 56358053 56358077 -67718095 + (TC)n Simple_repeat Simple_repeat 1 24 0 7 1014 2468 146 98 99 chr9 56358080 56358713 -67717459 - RMER1B Other Other -20 1046 415 7 1014 578 279 70 0 chr9 56358713 56358842 -67717330 - B1F SINE Alu -11 138 1 7 1014 1221 41 0 7 chr9 56359082 56359229 -67716943 + B1_Mm SINE Alu 1 146 -1 7 1014 554 145 401 32 chr9 56359281 56359438 -67716734 + B3 SINE B2 1 215 -1 7 1014 459 0 0 0 chr9 56359471 56359522 -67716650 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 7 1014 1192 58 0 0 chr9 56359522 56359661 -67716511 + B1_Mus2 SINE Alu 1 139 -8 7 1014 2557 164 53 62 chr9 56359805 56360198 -67715974 - RLTR31_Mm LTR ERVK 0 561 177 7 1014 1500 58 11 0 chr9 56360198 56360389 -67715783 + B2_Mm1t SINE B2 1 193 0 7 1014 2557 164 53 62 chr9 56360389 56360561 -67715611 - RLTR31_Mm LTR ERVK -385 176 1 7 126 187 295 32 16 chr9 56360943 56361005 -67715167 - MIRc SINE MIR -177 91 29 7 1015 743 194 44 22 chr9 56362052 56362189 -67713983 - B1_Mur1 SINE Alu -8 141 2 7 1015 879 194 200 0 chr9 56362216 56362396 -67713776 + B3 SINE B2 1 216 0 7 1015 200 171 11 109 chr9 56362524 56362587 -67713585 + T-rich Low_complexity Low_complexity 26 83 0 7 1015 205 140 20 20 chr9 56362533 56362584 -67713588 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1015 1388 60 49 0 chr9 56362587 56362771 -67713401 - B2_Mm2 SINE B2 -2 193 1 7 1015 200 171 11 109 chr9 56362771 56362799 -67713373 + T-rich Low_complexity Low_complexity 1 25 0 7 1015 599 243 7 91 chr9 56362799 56362953 -67713219 - B1F SINE Alu 0 149 9 7 1015 339 25 0 0 chr9 56363678 56363718 -67712454 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1015 216 0 0 0 chr9 56363718 56363741 -67712431 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1015 275 271 0 0 chr9 56363741 56363800 -67712372 - ID4 SINE ID -23 60 2 7 1015 378 191 221 11 chr9 56363800 56363895 -67712277 - PB1D10 SINE Alu -2 115 1 7 1015 180 269 19 19 chr9 56365013 56365066 -67711106 - MIRm SINE MIR -140 136 84 7 1015 880 77 17 0 chr9 56365496 56365613 -67710559 - PB1D9 SINE Alu 0 120 2 7 1015 1544 62 16 0 chr9 56365626 56365818 -67710354 - B2_Mm2 SINE B2 0 195 1 7 1015 4233 66 9 4 chr9 56365823 56366354 -67709818 - L1_Mus1 LINE L1 -1 6566 6033 7 1015 1299 27 0 0 chr9 56366384 56366531 -67709641 + B1_Mm SINE Alu 1 147 0 7 1015 695 282 105 8 chr9 56366854 56367111 -67709061 - B4 SINE B4 -8 284 3 7 1015 280 268 28 85 chr9 56367415 56367466 -67708706 + Arthur1A DNA Tip100 61 111 -66 7 1015 540 248 86 14 chr9 56367466 56367605 -67708567 - B1F2 SINE Alu 0 149 1 7 1015 280 268 28 85 chr9 56367605 56367659 -67708513 + Arthur1A DNA Tip100 112 160 -17 7 1015 1263 208 48 22 chr9 56367874 56368145 -67708027 + B4 SINE B4 13 290 -2 7 1015 401 345 11 11 chr9 56368221 56368400 -67707772 + (CATA)n Simple_repeat Simple_repeat 1 179 0 7 1015 495 247 72 20 chr9 56368424 56368577 -67707595 + L1MC4 LINE L1 7059 7219 -823 7 1015 236 264 33 33 chr9 56368583 56368673 -67707499 + ORR1E LTR MaLR 6 95 -264 7 1015 296 290 45 56 chr9 56368988 56369167 -67707005 + L1MC4 LINE L1 7205 7381 -661 7 1015 1124 212 0 19 chr9 56369175 56369391 -67706781 + B3 SINE B2 5 216 0 7 1015 921 89 0 0 chr9 56369398 56369521 -67706651 + B1_Mur4 SINE Alu 1 123 -27 7 1015 427 138 11 11 chr9 56369521 56369609 -67706563 + (CATA)n Simple_repeat Simple_repeat 1 88 0 7 1015 611 88 11 0 chr9 56369622 56369713 -67706459 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 7 1015 830 199 7 20 chr9 56369741 56369890 -67706282 + B1_Mur2 SINE Alu 2 148 -1 7 1015 472 238 34 20 chr9 56369979 56370125 -67706047 + L1MC4 LINE L1 7478 7625 -257 7 1015 530 283 200 13 chr9 56370359 56370672 -67705500 - MLT1B LTR MaLR -9 381 9 7 1015 267 302 13 62 chr9 56370678 56370883 -67705289 + L1ME2 LINE L1 5739 5930 -234 7 1015 180 0 0 0 chr9 56370892 56370912 -67705260 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1015 1152 37 7 0 chr9 56370913 56371048 -67705124 - B1_Mus1 SINE Alu -11 137 2 7 1015 1195 82 0 0 chr9 56371154 56371301 -67704871 + B1_Mus1 SINE Alu 1 147 -1 7 1015 1322 91 0 11 chr9 56371753 56371931 -67704241 + B2_Mm2 SINE B2 1 176 -19 7 1015 371 201 13 13 chr9 56372682 56372833 -67703339 + (TG)n Simple_repeat Simple_repeat 2 152 0 7 1015 435 187 17 17 chr9 56372852 56373026 -67703146 + (TG)n Simple_repeat Simple_repeat 1 174 0 7 1015 429 20 0 0 chr9 56373155 56373205 -67702967 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1015 294 29 0 0 chr9 56373289 56373324 -67702848 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1015 525 256 27 122 chr9 56373325 56373472 -67702700 - B4 SINE B4 -77 215 83 7 1015 440 241 0 0 chr9 56373480 56373567 -67702605 - B1_Mur1 SINE Alu 0 149 63 7 1015 366 292 36 45 chr9 56373568 56373679 -67702493 - B4 SINE B4 -181 111 2 7 1015 393 58 0 0 chr9 56373905 56373957 -67702215 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1015 404 345 0 9 chr9 56373957 56374071 -67702101 - RSINE1 SINE B4 -51 114 2 7 1015 376 246 147 96 chr9 56374185 56374342 -67701830 - RSINE1 SINE B4 0 165 1 7 1015 2301 107 28 0 chr9 56375317 56375635 -67700537 - ORR1A2 LTR MaLR 0 327 1 7 1015 281 333 63 0 chr9 56375994 56376120 -67700052 + L2b LINE L2 3238 3371 -4 7 1015 580 308 19 25 chr9 56376507 56376667 -67699505 + RSINE1 SINE B4 5 163 -2 7 1015 22 0 0 0 chr9 56376667 56376689 -67699483 + AT_rich Low_complexity Low_complexity 1 22 0 7 1015 216 111 0 0 chr9 56376694 56376730 -67699442 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1015 238 284 44 15 chr9 56376735 56376803 -67699369 + MIRb SINE MIR 114 183 -85 7 1015 412 227 40 40 chr9 56376808 56377014 -67699158 - ORR1E LTR MaLR -14 365 165 7 1015 578 14 14 0 chr9 56377014 56377085 -67699087 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 1015 375 294 97 74 chr9 56377085 56377179 -67698993 - ORR1E LTR MaLR -189 170 78 7 1015 1291 215 149 63 chr9 56377680 56377910 -67698262 + MTD LTR MaLR 1 249 -170 7 1015 1054 55 6 82 chr9 56377910 56378069 -67698103 - B1_Mm SINE Alu 0 147 1 7 1015 1291 215 149 63 chr9 56378069 56378200 -67697972 + MTD LTR MaLR 250 393 -26 7 1015 370 197 39 13 chr9 56378203 56378280 -67697892 - B3 SINE B2 -5 211 133 7 1015 284 79 0 0 chr9 56378309 56378347 -67697825 - B3A SINE B2 -158 40 3 7 1015 409 242 263 0 chr9 56378759 56378854 -67697318 + B1_Mur2 SINE Alu 1 120 -29 7 1015 856 261 23 28 chr9 56378902 56379119 -67697053 - B3 SINE B2 0 216 1 7 1015 232 196 59 0 chr9 56379131 56379182 -67696990 - ID4_ SINE ID -29 54 1 7 1015 26 30 0 0 chr9 56379191 56379224 -67696948 + AT_rich Low_complexity Low_complexity 1 33 0 7 1015 650 295 38 13 chr9 56379225 56379383 -67696789 - RSINE1 SINE B4 0 165 4 7 1015 682 191 107 13 chr9 56380808 56380957 -67695215 + RSINE1 SINE B4 3 165 0 7 1015 542 184 280 0 chr9 56381022 56381190 -67694982 + B3 SINE B2 1 215 -1 7 1015 803 191 0 60 chr9 56381203 56381353 -67694819 + B1_Mur4 SINE Alu 4 144 -6 7 1015 458 108 0 13 chr9 56381353 56381428 -67694744 + (GGA)n Simple_repeat Simple_repeat 2 75 0 7 1015 603 74 0 0 chr9 56381434 56381515 -67694657 + (GGGGA)n Simple_repeat Simple_repeat 1 81 0 7 1015 551 207 8 57 chr9 56381535 56381658 -67694514 - B1_Mur1 SINE Alu 0 149 33 7 1015 276 294 80 80 chr9 56382136 56382273 -67693899 - MIR3 SINE MIR -41 167 31 7 1015 723 71 0 0 chr9 56382963 56383061 -67693111 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 7 1015 22 0 0 0 chr9 56383176 56383198 -67692974 + AT_rich Low_complexity Low_complexity 1 22 0 7 1015 377 306 64 58 chr9 56383749 56383905 -67692267 - MIR SINE MIR -69 193 37 7 1015 256 203 13 26 chr9 56384680 56384756 -67691416 + T-rich Low_complexity Low_complexity 6 80 0 7 1015 1176 56 21 0 chr9 56384756 56384900 -67691272 - B1_Mus2 SINE Alu 0 147 1 7 1015 495 295 0 0 chr9 56384904 56385026 -67691146 - ID_B1 SINE B4 0 224 103 7 1015 1355 93 6 0 chr9 56385058 56385240 -67690932 - B2_Mm2 SINE B2 -9 186 4 7 1015 286 253 30 11 chr9 56385952 56386039 -67690133 - MTEb LTR MaLR -15 364 269 7 1015 900 138 31 0 chr9 56386580 56386710 -67689462 + B1_Mur4 SINE Alu 3 136 -14 7 1015 22 35 0 0 chr9 56388011 56388040 -67688132 + AT_rich Low_complexity Low_complexity 1 29 0 7 1015 187 294 28 56 chr9 56388126 56388198 -67687974 + MIR SINE MIR 35 104 -158 7 1015 628 252 36 0 chr9 56388452 56388591 -67687581 + ID_B1 SINE B4 78 221 -3 7 1015 1320 94 16 0 chr9 56388619 56388810 -67687362 + B2_Mm2 SINE B2 1 194 -1 7 1015 660 260 0 0 chr9 56388819 56388958 -67687214 + B1_Mur2 SINE Alu 1 139 -10 7 1015 297 0 0 0 chr9 56388958 56388991 -67687181 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1015 788 230 20 41 chr9 56388997 56389192 -67686980 + B3A SINE B2 2 192 -6 7 1015 512 263 0 0 chr9 56389482 56389596 -67686576 - ID_B1 SINE B4 -9 215 102 7 1015 677 184 32 0 chr9 56390135 56390260 -67685912 - B1_Mur4 SINE Alu -17 133 5 8 1015 401 300 101 88 chr9 56390260 56390285 -67685887 + MLT1J LTR MaLR 31 56 -456 8 1015 1727 169 99 0 chr9 56390285 56390629 -67685543 - ORR1C1 LTR MaLR 0 378 1 8 1015 401 300 101 88 chr9 56390629 56390899 -67685273 + MLT1J LTR MaLR 57 330 -182 8 1015 646 220 0 0 chr9 56391053 56391194 -67684978 + B1_Mur2 SINE Alu 1 141 -8 8 1015 261 75 0 0 chr9 56391303 56391343 -67684829 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1015 366 312 40 60 chr9 56391897 56392098 -67684074 - L1MD LINE L1 -3780 2366 2170 8 1015 231 218 0 0 chr9 56392230 56392285 -67683887 + GA-rich Low_complexity Low_complexity 2 56 0 8 1015 1290 101 11 0 chr9 56392296 56392484 -67683688 + B2_Mm2 SINE B2 1 190 -5 8 1015 657 0 0 0 chr9 56392851 56392924 -67683248 + (GA)n Simple_repeat Simple_repeat 1 73 0 8 1015 654 269 136 25 chr9 56393335 56393533 -67682639 + B4A SINE B4 9 228 -64 8 1015 508 185 22 0 chr9 56393540 56393632 -67682540 + PB1D9 SINE Alu 7 100 -20 8 1015 956 262 34 102 chr9 56394553 56394565 -67681607 - ORR1D2 LTR MaLR -13 357 347 8 1015 1069 90 7 0 chr9 56394565 56394710 -67681462 - B1_Mus1 SINE Alu -1 147 2 8 1015 956 262 34 102 chr9 56394710 56395080 -67681092 - ORR1D2 LTR MaLR -24 346 1 8 1015 240 263 0 0 chr9 56395810 56395867 -67680305 - L2c LINE L2 -199 3188 3132 8 1015 289 360 56 0 chr9 56395880 56395963 -67680209 - MER3 DNA MER1_type -2 207 118 8 1015 1044 245 38 34 chr9 56395963 56396229 -67679943 + B4A SINE B4 3 269 -23 8 1015 408 97 0 0 chr9 56396231 56396293 -67679879 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1015 1894 124 55 25 chr9 56396642 56397040 -67679132 - RMER17C LTR ERVK 0 410 1 8 1015 278 318 65 43 chr9 56397514 56397796 -67678376 + MLT1G LTR MaLR 14 330 -265 8 1015 358 347 16 0 chr9 56397843 56397967 -67678205 + MLT1G LTR MaLR 435 560 -31 8 1015 556 123 38 13 chr9 56398695 56398852 -67677320 + (CA)n Simple_repeat Simple_repeat 1 161 0 8 1015 384 22 0 0 chr9 56398945 56398990 -67677182 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1015 201 182 0 0 chr9 56398990 56399023 -67677149 + T-rich Low_complexity Low_complexity 1 33 0 8 1015 1117 75 7 0 chr9 56399023 56399170 -67677002 - B1_Mus1 SINE Alu 0 148 1 8 1015 335 23 23 0 chr9 56399248 56399292 -67676880 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1015 204 331 27 116 chr9 56400394 56400541 -67675631 + L2b LINE L2 3112 3245 -130 8 1015 209 245 38 0 chr9 56400630 56400683 -67675489 + MIR3 SINE MIR 104 158 -50 8 1015 309 229 39 78 chr9 56402609 56402737 -67673435 + L1MA4A LINE L1 5814 5936 -361 8 1015 536 213 14 0 chr9 56402745 56402886 -67673286 + (CATATA)n Simple_repeat Simple_repeat 5 147 0 8 1015 672 110 263 0 chr9 56402905 56403023 -67673149 - B1_Mur4 SINE Alu 0 150 2 8 1015 401 250 18 9 chr9 56405969 56406082 -67670090 + PB1D9 SINE Alu 2 115 -5 8 1015 645 80 0 0 chr9 56406082 56406170 -67670002 + (GA)n Simple_repeat Simple_repeat 1 88 0 8 1015 1164 106 0 0 chr9 56406172 56406351 -67669821 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 8 1015 201 250 0 0 chr9 56407844 56407884 -67668288 + polypurine Low_complexity Low_complexity 3 42 0 8 1015 318 312 31 13 chr9 56408428 56408587 -67667585 + (TATG)n Simple_repeat Simple_repeat 3 164 0 8 1015 1336 62 23 0 chr9 56409809 56409985 -67666187 + B2_Mm2 SINE B2 2 181 -14 8 1015 378 245 70 21 chr9 56410013 56410124 -67666048 + B2_Mm2 SINE B2 47 162 -33 8 1015 1081 69 7 0 chr9 56410124 56410268 -67665904 - B1_Mm SINE Alu -1 146 2 8 1015 378 245 70 21 chr9 56410268 56410298 -67665874 + B2_Mm2 SINE B2 163 194 -1 8 1015 202 121 30 0 chr9 56410298 56410331 -67665841 + GA-rich Low_complexity Low_complexity 3 36 0 8 1015 383 329 40 13 chr9 56410491 56410642 -67665530 + RSINE1 SINE B4 3 157 -8 8 1015 318 106 0 0 chr9 56412905 56412952 -67663220 + (TTAA)n Simple_repeat Simple_repeat 2 48 0 8 1015 659 266 0 0 chr9 56412963 56413091 -67663081 - RSINE1 SINE B4 -35 130 3 8 1015 2263 148 32 65 chr9 56413873 56414306 -67661866 - MTC LTR MaLR -2 419 1 8 1015 590 99 11 0 chr9 56414324 56414415 -67661757 + (GGAA)n Simple_repeat Simple_repeat 2 93 0 8 1015 616 212 0 0 chr9 56414429 56414542 -67661630 + RSINE1 SINE B4 31 143 -22 8 1015 772 263 0 25 chr9 56414610 56414809 -67661363 + B3A SINE B2 5 198 0 8 1015 690 13 0 0 chr9 56414836 56414915 -67661257 + (GA)n Simple_repeat Simple_repeat 2 80 0 8 1015 1131 62 0 0 chr9 56415396 56415542 -67660630 + B1_Mm SINE Alu 2 147 0 8 1015 627 255 184 3 chr9 56415554 56415853 -67660319 + L1M4 LINE L1 4316 4668 -1478 8 1015 334 270 8 126 chr9 56415852 56415922 -67660250 + L1MC1 LINE L1 5534 5593 -740 8 1015 1256 80 17 0 chr9 56415922 56416097 -67660075 + B2_Mm2 SINE B2 2 179 -16 8 1015 334 270 8 126 chr9 56416097 56416153 -67660019 + L1MC1 LINE L1 5594 5645 -688 8 1015 217 319 77 83 chr9 56416167 56416218 -67659954 + B4 SINE B4 48 200 -92 8 1015 333 287 81 8 chr9 56416218 56416341 -67659831 + B1F2 SINE Alu 18 149 0 8 1015 382 273 10 20 chr9 56416348 56416449 -67659723 + Lx8 LINE L1 7075 7174 -299 8 1015 236 300 86 52 chr9 56416642 56416874 -67659298 + ORR1B1-int LTR MaLR 515 754 -755 8 1015 453 218 43 104 chr9 56416747 56416911 -67659261 + B4A SINE B4 71 224 -68 8 1015 1063 43 7 0 chr9 56416774 56416912 -67659260 + B1_Mus1 SINE Alu 9 147 -1 8 1015 380 326 27 13 chr9 56416941 56417090 -67659082 + L1MC1 LINE L1 5674 5824 -509 8 1015 611 164 355 19 chr9 56417095 56417250 -67658922 + B3 SINE B2 1 207 -9 8 1015 1154 206 0 0 chr9 56417300 56417499 -67658673 + B3 SINE B2 1 199 -17 8 1015 608 211 0 0 chr9 56417542 56417656 -67658516 + RSINE1 SINE B4 11 124 -41 8 1015 1314 263 105 23 chr9 56417704 56418179 -67657993 + L1MC1 LINE L1 5817 6330 -3 8 1015 1345 217 20 48 chr9 56418177 56418531 -67657641 + L1M4 LINE L1 4663 5006 -1140 8 1015 400 342 168 46 chr9 56418920 56419159 -67657013 + MLT1H LTR MaLR 56 319 -230 8 1015 1185 186 5 0 chr9 56419159 56419374 -67656798 + B3 SINE B2 1 216 0 8 1015 400 342 168 46 chr9 56419374 56419545 -67656627 + MLT1H LTR MaLR 320 516 -33 8 1015 189 0 0 0 chr9 56420067 56420088 -67656084 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1015 1183 178 10 5 chr9 56421762 56421971 -67654201 + B3 SINE B2 1 210 -6 8 1015 810 202 153 0 chr9 56423509 56423692 -67652480 + B3 SINE B2 5 215 -1 8 1015 342 0 0 0 chr9 56424346 56424384 -67651788 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 1015 526 171 16 93 chr9 56425780 56425909 -67650263 - PB1D9 SINE Alu 0 120 2 8 1015 442 289 54 40 chr9 56426224 56426372 -67649800 - B4A SINE B4 0 292 143 8 1015 417 287 129 35 chr9 56427243 56427413 -67648759 + MIR SINE MIR 63 248 -14 8 1015 190 243 0 0 chr9 56427836 56427873 -67648299 + MIR SINE MIR 113 149 -59 8 1015 312 188 0 0 chr9 56430949 56431013 -67645159 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1015 616 274 7 0 chr9 56431046 56431192 -67644980 - RSINE1 SINE B4 -17 148 2 8 1015 817 157 35 7 chr9 56432723 56432864 -67643308 + B1_Mus1 SINE Alu 3 147 -1 8 1015 276 243 77 10 chr9 56433497 56433601 -67642571 + L2 LINE L2 2941 3051 -368 8 1015 194 278 56 0 chr9 56434040 56434112 -67642060 - MIRc SINE MIR -129 139 64 8 1015 640 325 29 5 chr9 56435818 56436022 -67640150 + MLT1A0 LTR MaLR 157 365 0 8 1015 504 0 0 0 chr9 56436038 56436094 -67640078 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1015 215 280 0 0 chr9 56436299 56436349 -67639823 - MIRb SINE MIR -3 265 216 8 1015 506 250 0 24 chr9 56436488 56436615 -67639557 + ID_B1 SINE B4 94 217 -7 8 1015 395 219 0 12 chr9 56436618 56436701 -67639471 + RSINE1 SINE B4 84 165 0 8 1015 393 236 0 0 chr9 56436707 56436855 -67639317 + (CA)n Simple_repeat Simple_repeat 1 148 0 8 1015 465 239 0 0 chr9 56436917 56437097 -67639075 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1015 287 277 42 49 chr9 56438446 56438590 -67637582 + MER113 DNA MER1_type 290 432 -89 8 1015 674 232 110 10 chr9 56438623 56438823 -67637349 + ID_B1 SINE B4 1 220 -4 8 1015 473 174 0 10 chr9 56440319 56440418 -67635754 + CT-rich Low_complexity Low_complexity 3 100 0 8 1015 413 263 22 14 chr9 56440480 56440619 -67635553 - B1F SINE Alu -5 144 5 8 1015 301 302 119 76 chr9 56441147 56441398 -67634774 + MIR SINE MIR 1 262 0 8 1015 4807 159 42 9 chr9 56442095 56442973 -67633199 + RMER13B LTR ERVK 2 908 0 8 1015 481 311 6 73 chr9 56443743 56443920 -67632252 - RSINE1 SINE B4 0 165 1 8 1015 2466 288 69 17 chr9 56444023 56444614 -67631558 - Lx8 LINE L1 -2 7471 6838 8 1015 2262 146 33 11 chr9 56444614 56444973 -67631199 + ORR1B2 LTR MaLR 1 367 0 8 1015 2466 288 69 17 chr9 56444973 56445202 -67630970 - Lx8 LINE L1 -636 6837 6608 8 1015 590 275 246 13 chr9 56445457 56445689 -67630483 + B4A SINE B4 5 290 -2 8 1015 293 172 16 0 chr9 56445691 56445755 -67630417 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1015 604 275 12 6 chr9 56445975 56446136 -67630036 + MER33 DNA MER1_type 1 162 -162 8 1015 347 396 31 10 chr9 56446263 56446457 -67629715 + MER58C DNA MER1_type 1 198 -17 8 1015 369 323 0 68 chr9 56446482 56446615 -67629557 + L2a LINE L2 3303 3426 0 8 1015 535 193 139 9 chr9 56447165 56447305 -67628867 - B1_Mur2 SINE Alu 0 149 6 8 1015 263 237 0 33 chr9 56447953 56448014 -67628158 - B1F SINE Alu -90 59 1 8 1015 351 302 51 8 chr9 56448027 56448144 -67628028 + RSINE1 SINE B4 3 124 -41 8 1015 852 39 0 0 chr9 56448144 56448248 -67627924 + (CA)n Simple_repeat Simple_repeat 2 105 0 8 1015 25 51 0 0 chr9 56449044 56449083 -67627089 + AT_rich Low_complexity Low_complexity 1 39 0 8 1015 935 128 43 0 chr9 56449084 56449225 -67626947 + B1_Mus1 SINE Alu 1 147 -1 8 1015 877 181 176 0 chr9 56449248 56449430 -67626742 - B3 SINE B2 -1 215 2 9 1015 1261 83 53 0 chr9 56449459 56449628 -67626544 + B2_Mm1t SINE B2 2 179 -14 9 1015 213 273 0 0 chr9 56449686 56449741 -67626431 + B3 SINE B2 47 101 -115 9 1015 26 30 0 0 chr9 56449777 56449810 -67626362 + AT_rich Low_complexity Low_complexity 1 33 0 9 1015 685 213 19 187 chr9 56449814 56449989 -67626183 - B3A SINE B2 -16 182 33 9 1015 422 212 223 25 chr9 56449989 56450110 -67626062 - B1_Mus2 SINE Alu 0 147 3 9 1015 685 213 19 187 chr9 56450110 56450148 -67626024 - B3A SINE B2 -166 32 5 9 1015 198 150 39 0 chr9 56450240 56450291 -67625881 - L2c LINE L2 -222 3165 3106 9 1015 4195 162 179 27 chr9 56450303 56451223 -67624949 + RMER1B Other Other 1 1060 -6 9 1015 294 29 0 0 chr9 56451287 56451322 -67624850 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1015 497 242 0 0 chr9 56451322 56451417 -67624755 - RSINE1 SINE B4 -41 124 30 9 1015 504 268 18 0 chr9 56451501 56451613 -67624559 + ID_B1 SINE B4 4 117 -107 9 1015 423 267 82 22 chr9 56452081 56452215 -67623957 + B1F SINE Alu 1 142 -7 9 1015 198 71 0 0 chr9 56453132 56453160 -67623012 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1015 541 0 29 0 chr9 56453160 56453228 -67622944 + (GA)n Simple_repeat Simple_repeat 2 72 0 9 1015 234 0 0 0 chr9 56453521 56453547 -67622625 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1015 209 276 32 0 chr9 56453620 56453691 -67622481 - MIR SINE MIR -113 155 83 9 1015 452 222 16 48 chr9 56453766 56453893 -67622279 - PB1D7 SINE Alu -19 130 14 9 1015 220 298 36 63 chr9 56453820 56453931 -67622241 - B4A SINE B4 -118 174 67 9 1015 719 179 0 0 chr9 56454689 56454806 -67621366 + PB1D9 SINE Alu 2 118 -2 9 1015 190 0 41 82 chr9 56454806 56454855 -67621317 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1015 255 274 143 16 chr9 56454920 56454989 -67621183 - RSINE1 SINE B4 -23 142 72 9 1015 180 0 0 0 chr9 56454989 56455009 -67621163 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 9 1015 255 274 143 16 chr9 56455009 56455065 -67621107 - RSINE1 SINE B4 -94 71 3 9 1015 2088 143 66 88 chr9 56455227 56455679 -67620493 + RMER10A LTR ERVL 1 442 0 9 1015 214 250 15 15 chr9 56456578 56456643 -67619529 + MER5B DNA MER1_type 5 69 -109 9 1015 384 22 0 0 chr9 56457817 56457862 -67618310 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1015 459 0 0 0 chr9 56457862 56457912 -67618260 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 1015 554 217 251 0 chr9 56457913 56458124 -67618048 - B4 SINE B4 -26 266 3 9 1015 369 281 344 5 chr9 56458849 56459044 -67617128 - MIR SINE MIR 0 268 8 9 1015 357 24 0 0 chr9 56459188 56459230 -67616942 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1015 189 254 0 0 chr9 56459605 56459660 -67616512 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1015 993 148 179 5 chr9 56462173 56462363 -67613809 + URR1B DNA MER1_type 1 223 -2 9 1015 333 285 74 32 chr9 56462640 56462848 -67613324 + MLT1G1 LTR MaLR 302 545 -34 9 1015 728 256 103 5 chr9 56463024 56463209 -67612963 - ID_B1 SINE B4 -19 205 3 9 1015 576 162 63 0 chr9 56464906 56465017 -67611155 + PB1D9 SINE Alu 2 119 -1 9 1015 227 282 230 23 chr9 56465018 56465105 -67611067 - MIRc SINE MIR -116 152 48 9 1015 213 178 0 0 chr9 56465303 56465348 -67610824 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 9 1015 999 227 16 16 chr9 56466280 56466526 -67609646 - MIRc SINE MIR -17 251 6 9 1015 213 175 0 0 chr9 56466797 56466837 -67609335 + GA-rich Low_complexity Low_complexity 1 40 0 9 1015 181 270 126 94 chr9 56470342 56470469 -67605703 - MIRm SINE MIR -86 190 60 9 1015 848 306 161 0 chr9 56471745 56471993 -67604179 - B4A SINE B4 -2 290 3 9 1015 232 244 49 74 chr9 56473069 56473175 -67602997 - MIR3 SINE MIR -32 176 71 9 1015 387 41 0 0 chr9 56473223 56473272 -67602900 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1015 848 170 21 0 chr9 56473824 56473965 -67602207 + B1_Mur2 SINE Alu 3 146 -3 9 1015 249 280 43 78 chr9 56476277 56476393 -67599779 + MT2B LTR ERVL 146 257 -344 9 1015 594 238 30 15 chr9 56476307 56476439 -67599733 + B1_Mur1 SINE Alu 15 148 -1 9 1015 403 250 41 29 chr9 56476594 56476782 -67599390 - MIR SINE MIR -80 196 17 9 1015 432 0 0 0 chr9 56478545 56478593 -67597579 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1015 482 350 102 43 chr9 56478762 56479273 -67596899 + L1ME3B LINE L1 5409 5949 -291 9 1015 460 241 0 0 chr9 56479303 56479386 -67596786 - ID4 SINE ID 0 83 1 9 1015 738 208 0 7 chr9 56479565 56479710 -67596462 - B1F2 SINE Alu 0 149 6 9 1015 692 333 17 21 chr9 56479956 56480195 -67595977 - MIR SINE MIR -3 259 22 9 1015 239 54 27 0 chr9 56483497 56483534 -67592638 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 9 1015 22 35 0 0 chr9 56483705 56483734 -67592438 + GC_rich Low_complexity Low_complexity 1 29 0 9 1015 273 22 65 0 chr9 56484036 56484082 -67592090 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1015 408 318 16 0 chr9 56485040 56485190 -67590982 - MIR SINE MIR -64 204 45 9 1015 261 0 0 0 chr9 56485477 56485506 -67590666 + (CGGGGG)n Simple_repeat Simple_repeat 3 31 0 9 1015 290 252 105 61 chr9 56486509 56486623 -67589549 + PB1D7 SINE Alu 2 120 0 9 1015 219 295 25 13 chr9 56487172 56487251 -67588921 + MIR SINE MIR 53 132 -76 9 1015 255 306 143 9 chr9 56488233 56488345 -67587827 + MIR SINE MIR 2 129 -79 9 1015 234 258 61 61 chr9 56488352 56488451 -67587721 + MLT1F2 LTR MaLR 6 104 -456 9 1015 486 341 246 11 chr9 56488531 56488905 -67587267 + MLT1F2 LTR MaLR 99 560 0 9 1015 257 231 92 5 chr9 56489476 56489575 -67586597 - MIR SINE MIR -45 223 111 9 1015 435 19 0 0 chr9 56489761 56489813 -67586359 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1015 228 321 45 9 chr9 56489961 56490094 -67586078 - MIR SINE MIR -69 199 56 9 1015 318 98 0 0 chr9 56491015 56491066 -67585106 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 1016 1038 82 0 0 chr9 56493556 56493715 -67582457 + (TC)n Simple_repeat Simple_repeat 1 159 0 9 1016 747 156 0 41 chr9 56493718 56493865 -67582307 - B1_Mus2 SINE Alu 0 147 7 9 1016 374 227 0 129 chr9 56493752 56493899 -67582273 - MT2B LTR ERVL -332 269 142 9 1016 1156 94 0 16 chr9 56496335 56496518 -67579654 + (GGA)n Simple_repeat Simple_repeat 1 180 0 9 1016 216 200 0 0 chr9 56496518 56496563 -67579609 + GA-rich Low_complexity Low_complexity 1 45 0 9 1016 200 213 43 0 chr9 56497324 56497371 -67578801 - MIR SINE MIR -104 158 110 9 1016 227 172 0 0 chr9 56497399 56497446 -67578726 - MIRb SINE MIR -1 261 216 9 1016 824 262 111 37 chr9 56498081 56498351 -67577821 - B4 SINE B4 0 292 3 9 1016 348 269 0 0 chr9 56498389 56498467 -67577705 + BC1_Mm scRNA scRNA 13 90 -62 9 1016 387 0 0 0 chr9 56499302 56499345 -67576827 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1016 466 324 126 23 chr9 56500130 56500392 -67575780 - B4A SINE B4 -2 290 2 1 1016 2607 45 0 12 chr9 56500868 56501205 -67574967 + MTA_Mm LTR MaLR 1 333 -63 2 1016 221 340 107 0 chr9 56501700 56501846 -67574326 + MIRc SINE MIR 93 265 -3 3 1016 457 16 32 0 chr9 56502023 56502085 -67574087 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1016 228 399 21 57 chr9 56503019 56503160 -67573012 + MLT1J2 LTR MaLR 19 154 -294 5 1016 207 341 27 55 chr9 56503367 56503513 -67572659 - MIRc SINE MIR -122 146 5 6 1016 188 225 0 0 chr9 56506370 56506410 -67569762 - MIR SINE MIR -59 149 110 7 1016 182 37 37 0 chr9 56506914 56506941 -67569231 + (TCTCCC)n Simple_repeat Simple_repeat 5 32 0 8 1016 234 188 27 0 chr9 56508137 56508193 -67567979 + MIR SINE MIR 183 245 -23 9 1016 311 113 0 19 chr9 56510951 56511005 -67565167 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1016 189 273 73 29 chr9 56512991 56513059 -67563113 + MIR SINE MIR 69 139 -123 1 1016 941 277 35 28 chr9 56513138 56513420 -67562752 + B4 SINE B4 9 292 0 1 1016 188 67 0 32 chr9 56513460 56513491 -67562681 + (GGGGA)n Simple_repeat Simple_repeat 4 33 0 1 1016 291 54 0 0 chr9 56515140 56515177 -67560995 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1016 596 265 175 24 chr9 56515943 56516417 -67559755 + L1MB7 LINE L1 5596 6171 0 1 1016 180 407 22 0 chr9 56516587 56516722 -67559450 - MIRm SINE MIR -102 174 37 1 1016 224 249 54 27 chr9 56518109 56518184 -67557988 + MIRb SINE MIR 114 201 -67 1 1016 1059 251 79 53 chr9 56518472 56518813 -67557359 + ORR1D2 LTR MaLR 21 370 0 1 1016 343 338 80 0 chr9 56519239 56519476 -67556696 + L2a LINE L2 2193 2448 -971 1 1016 244 361 15 22 chr9 56519516 56519652 -67556520 + MER45A DNA Tip100 43 177 -1 2 1016 304 210 16 0 chr9 56519883 56519945 -67556227 - YREP_Mm Unknown Unknown -1518 294 232 2 1016 594 0 0 0 chr9 56519952 56520018 -67556154 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 1016 1021 174 9 76 chr9 56520028 56520252 -67555920 - B3 SINE B2 -7 209 1 2 1016 323 374 57 6 chr9 56520279 56520438 -67555734 + L2a LINE L2 3259 3425 -1 1 1016 260 362 107 46 chr9 56520444 56520901 -67555271 + L1MC LINE L1 5312 5796 -2086 2 1016 315 0 0 0 chr9 56520954 56520989 -67555183 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1016 1026 130 0 0 chr9 56521553 56521699 -67554473 - B1_Mus1 SINE Alu 0 148 3 2 1016 1617 289 117 18 chr9 56523169 56523834 -67552338 - L1ME1 LINE L1 -18 6161 5431 2 1016 1074 163 36 55 chr9 56523942 56524162 -67552010 - B3 SINE B2 0 216 1 2 1016 297 253 48 0 chr9 56524252 56524335 -67551837 - MIR SINE MIR -38 224 138 2 1016 207 362 30 23 chr9 56524431 56524564 -67551608 - MIR SINE MIR -114 148 15 3 1016 1181 70 0 0 chr9 56525298 56525440 -67550732 + B1_Mus1 SINE Alu 1 142 -6 3 1016 761 222 18 18 chr9 56526228 56526393 -67549779 - B3 SINE B2 0 216 52 3 1016 195 69 0 0 chr9 56527707 56527736 -67548436 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 3 1016 1073 326 63 11 chr9 56528218 56528867 -67547305 + L1M5 LINE L1 5133 5822 -302 3 1016 251 278 24 73 chr9 56529351 56529475 -67546697 - MIR SINE MIR -45 163 45 3 1016 186 322 96 32 chr9 56529842 56529967 -67546205 + L2c LINE L2 3216 3348 -39 3 1016 271 300 88 80 chr9 56531124 56531363 -67544809 - L4 LINE RTE -1 2028 1788 3 1016 198 192 18 55 chr9 56532051 56532106 -67544066 - MIR SINE MIR -72 136 84 3 1016 248 336 35 35 chr9 56532489 56532634 -67543538 + MLT1K LTR MaLR 391 535 -60 3 1016 1197 74 0 0 chr9 56532665 56532813 -67543359 - B1_Mus1 SINE Alu 0 148 1 4 1016 201 275 37 56 chr9 56534308 56534432 -67541740 - L2c LINE L2 -146 3229 3103 4 1016 271 369 104 39 chr9 56534445 56534781 -67541391 - L2c LINE L2 -507 2912 2555 4 1016 33 0 0 0 chr9 56535977 56536010 -67540162 + AT_rich Low_complexity Low_complexity 1 33 0 4 1016 1164 174 14 24 chr9 56536014 56536226 -67539946 - B3 SINE B2 -4 212 3 4 1016 198 308 12 49 chr9 56536719 56536801 -67539371 - MIR SINE MIR -63 145 67 4 1016 671 0 13 0 chr9 56537268 56537347 -67538825 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1016 226 232 167 10 chr9 56537810 56537906 -67538266 + MIRc SINE MIR 60 170 -98 4 1016 222 37 0 0 chr9 56538826 56538853 -67537319 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 4 1016 364 318 60 20 chr9 56539155 56539306 -67536866 - L2 LINE L2 -527 2892 2736 4 1016 2115 185 22 5 chr9 56540973 56541374 -67534798 - MTD LTR MaLR -11 408 1 4 1016 3854 131 110 25 chr9 56542610 56543434 -67532738 + RMER17A2 LTR ERVK 1 894 -12 5 1016 286 338 75 7 chr9 56543488 56543634 -67532538 + MIRb SINE MIR 21 176 -92 5 1016 266 346 48 30 chr9 56545044 56545215 -67530957 + MIRb SINE MIR 16 183 -25 5 1016 681 173 129 47 chr9 56545487 56545657 -67530515 + B3A SINE B2 15 198 0 5 1016 181 264 0 86 chr9 56545991 56546049 -67530123 + MIRb SINE MIR 213 265 -3 5 1016 234 309 144 16 chr9 56546185 56546310 -67529862 - MIRb SINE MIR -83 185 45 5 1016 213 121 0 0 chr9 56547269 56547302 -67528870 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1016 554 296 81 13 chr9 56547304 56547540 -67528632 + MLT1C LTR MaLR 213 464 -3 5 1016 1561 191 111 26 chr9 56547981 56548325 -67527847 + ORR1D1 LTR MaLR 2 374 0 5 1016 191 156 0 0 chr9 56548431 56548463 -67527709 - L2b LINE L2 -11 3364 3333 5 1016 194 278 19 0 chr9 56549874 56549928 -67526244 + MIRc SINE MIR 122 176 -92 5 1016 462 235 10 0 chr9 56550054 56550156 -67526016 + PB1D10 SINE Alu 15 117 0 6 1016 491 261 28 14 chr9 56550481 56550625 -67525547 + B1F SINE Alu 2 147 -2 6 1016 461 198 0 36 chr9 56550636 56550720 -67525452 + ID4_ SINE ID 3 83 0 6 1016 217 230 13 13 chr9 56550735 56550810 -67525362 + GA-rich Low_complexity Low_complexity 2 76 0 6 1016 425 261 0 57 chr9 56550859 56550981 -67525191 + PB1D10 SINE Alu 3 117 0 6 1016 779 254 20 15 chr9 56551647 56551802 -67524370 + B3 SINE B2 11 168 -48 6 1016 243 0 0 0 chr9 56551802 56551829 -67524343 + (CATA)n Simple_repeat Simple_repeat 4 30 0 6 1016 779 254 20 15 chr9 56551829 56551873 -67524299 + B3 SINE B2 169 210 -6 6 1016 214 292 14 14 chr9 56553649 56553722 -67522450 - PB1D10 SINE Alu -7 110 38 6 1016 234 0 0 0 chr9 56555049 56555075 -67521097 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1016 456 245 49 59 chr9 56556023 56556199 -67519973 + B4A SINE B4 3 174 -118 6 1016 243 0 0 0 chr9 56556724 56556751 -67519421 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1016 209 312 88 17 chr9 56558056 56558220 -67517952 + L2c LINE L2 2970 3154 -233 7 1016 286 326 21 31 chr9 56559136 56559267 -67516905 + MIRb SINE MIR 1 123 -145 7 1016 1411 91 0 21 chr9 56559367 56559557 -67516615 + B2_Mm2 SINE B2 1 186 -9 7 1016 466 182 0 29 chr9 56559575 56559677 -67516495 - B1_Mur1 SINE Alu 0 149 51 7 1016 336 238 108 19 chr9 56561695 56561858 -67514314 - MIRc SINE MIR -36 226 46 7 1016 192 179 0 0 chr9 56562104 56562143 -67514029 + CT-rich Low_complexity Low_complexity 3 41 0 7 1016 944 167 7 0 chr9 56562143 56562287 -67513885 - B1_Mur4 SINE Alu -5 145 1 7 1016 377 214 88 73 chr9 56562856 56562992 -67513180 + ID_B1 SINE B4 86 223 -1 7 1016 371 268 54 84 chr9 56563019 56563186 -67512986 + RSINE1 SINE B4 4 165 0 7 1016 222 207 0 0 chr9 56563186 56563244 -67512928 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1016 961 163 0 0 chr9 56563285 56563426 -67512746 + B1_Mur3 SINE Alu 3 143 -6 8 1016 720 309 48 39 chr9 56563434 56563857 -67512315 + L1MB2 LINE L1 5473 5898 -273 8 1016 497 297 179 5 chr9 56563897 56564093 -67512079 + MIR SINE MIR 33 262 0 8 1016 519 17 0 0 chr9 56564261 56564321 -67511851 + (GA)n Simple_repeat Simple_repeat 2 61 0 8 1016 824 244 64 21 chr9 56565173 56565408 -67510764 + B4A SINE B4 6 250 -42 8 1016 504 32 0 0 chr9 56565422 56565484 -67510688 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1016 332 265 78 0 chr9 56565796 56565898 -67510274 + MLT1A1 LTR MaLR 299 408 0 8 1016 317 336 123 22 chr9 56565968 56566356 -67509816 + MLT-int LTR MaLR 168 594 -1141 8 1016 494 312 128 11 chr9 56566765 56566953 -67509219 + MLT-int LTR MaLR 1513 1722 -13 8 1016 243 271 14 0 chr9 56567382 56567452 -67508720 - PB1D10 SINE Alu -46 71 1 8 1016 755 258 83 4 chr9 56567487 56567717 -67508455 + B4A SINE B4 2 249 -43 9 1016 239 98 0 38 chr9 56567719 56567772 -67508400 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 9 1016 320 357 58 42 chr9 56567821 56567834 -67508338 - MIR SINE MIR -58 204 195 9 1016 243 0 0 0 chr9 56567834 56567861 -67508311 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1016 320 357 58 42 chr9 56567861 56568037 -67508135 - MIR SINE MIR -68 194 12 9 1016 182 195 24 0 chr9 56568298 56568339 -67507833 + MIRc SINE MIR 112 153 -115 9 1016 314 280 25 58 chr9 56568470 56568623 -67507549 + MIR SINE MIR 45 190 -78 9 1016 924 188 0 0 chr9 56568837 56569261 -67506911 + (CA)n Simple_repeat Simple_repeat 1 424 0 9 1016 215 289 0 67 chr9 56569769 56569858 -67506314 - MIRc SINE MIR -142 126 44 9 1016 338 254 145 0 chr9 56572679 56572817 -67503355 - MER5A DNA MER1_type -31 158 1 9 1016 351 0 0 0 chr9 56572884 56572923 -67503249 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1016 423 189 16 124 chr9 56573027 56573148 -67503024 + MT2B LTR ERVL 155 262 -339 1 1016 822 106 22 29 chr9 56573050 56573186 -67502986 + B1_Mus2 SINE Alu 11 145 -2 1 1016 1247 136 116 0 chr9 56573512 56573711 -67502461 + URR1A DNA MER1_type 5 226 0 1 1016 416 183 56 87 chr9 56574075 56574201 -67501971 + MT2B LTR ERVL 157 278 -323 1 1016 757 143 0 0 chr9 56574092 56574211 -67501961 + B1_Mur4 SINE Alu 15 133 -17 1 1016 555 56 0 0 chr9 56574348 56574419 -67501753 + (GGGA)n Simple_repeat Simple_repeat 2 72 0 1 1016 328 336 97 60 chr9 56576465 56576763 -67499409 - L2b LINE L2 -9 3366 3058 1 1016 183 337 102 0 chr9 56577712 56577810 -67498362 - MIR SINE MIR -56 152 45 1 1016 323 277 42 12 chr9 56577871 56578039 -67498133 + L1MCc LINE L1 87 259 -6164 1 1016 330 282 0 49 chr9 56578360 56578483 -67497689 + C-rich Low_complexity Low_complexity 3 119 0 1 1016 188 211 75 19 chr9 56579065 56579118 -67497054 + L2c LINE L2 3329 3384 -3 1 1016 264 344 77 41 chr9 56579491 56579661 -67496511 - MIRb SINE MIR -28 240 65 1 1016 239 346 41 47 chr9 56580743 56580913 -67495259 - MIR3 SINE MIR -3 205 37 1 1016 1407 167 9 0 chr9 56580935 56581157 -67495015 + URR1B DNA MER1_type 2 225 0 1 1016 201 279 44 0 chr9 56581835 56581903 -67494269 - MIRc SINE MIR -159 109 39 1 1016 219 269 59 15 chr9 56582193 56582261 -67493911 + MIRb SINE MIR 113 183 -85 1 1016 803 18 35 0 chr9 56583315 56583428 -67492744 + (GA)n Simple_repeat Simple_repeat 1 117 0 1 1016 181 415 27 20 chr9 56584029 56584179 -67491993 - L2b LINE L2 0 3375 3225 1 1016 318 254 8 34 chr9 56586846 56586964 -67489208 + GA-rich Low_complexity Low_complexity 1 115 0 1 1016 795 97 0 0 chr9 56586967 56587081 -67489091 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 1 1016 204 211 77 0 chr9 56587581 56587633 -67488539 + MIRm SINE MIR 97 152 -124 1 1016 194 286 18 0 chr9 56588056 56588089 -67488083 - MIR3 SINE MIR -43 165 132 1 1016 208 293 112 16 chr9 56588089 56588214 -67487958 + MIRb SINE MIR 4 140 -128 1 1016 198 0 0 0 chr9 56589351 56589373 -67486799 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1016 342 111 0 0 chr9 56590230 56590268 -67485904 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1016 1716 26 0 0 chr9 56590268 56590461 -67485711 - B2_Mm1a SINE B2 0 193 1 1 1016 342 111 0 0 chr9 56590461 56590476 -67485696 + (T)n Simple_repeat Simple_repeat 1 15 0 1 1016 270 0 0 0 chr9 56591067 56591097 -67485075 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1016 258 156 0 0 chr9 56591488 56591533 -67484639 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1016 307 365 20 27 chr9 56591737 56591886 -67484286 + MIRb SINE MIR 108 255 -13 1 1016 191 339 16 0 chr9 56593947 56594009 -67482163 + MIRm SINE MIR 214 276 0 1 1016 196 274 71 60 chr9 56594615 56594769 -67481403 - MIRc SINE MIR -50 218 55 1 1016 376 302 108 42 chr9 56595287 56595645 -67480527 + L1M5 LINE L1 5133 5513 -660 1 1016 417 300 69 0 chr9 56595896 56596056 -67480116 + HAL1 LINE L1 49 219 -2288 1 1016 460 56 0 40 chr9 56596191 56596265 -67479907 + (TCTCCC)n Simple_repeat Simple_repeat 3 73 0 1 1016 220 181 20 50 chr9 56596267 56596366 -67479806 + (TCTCTG)n Simple_repeat Simple_repeat 1 96 0 1 1016 225 132 0 0 chr9 56596372 56596410 -67479762 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 1 1016 781 310 40 11 chr9 56596982 56597256 -67478916 + B4A SINE B4 9 290 -2 1 1016 308 216 13 51 chr9 56597292 56597370 -67478802 + HAL1-3A_ME LINE L1 1976 2050 -808 1 1016 1169 202 9 5 chr9 56597390 56597604 -67478568 + B3 SINE B2 2 216 0 1 1016 1069 77 19 13 chr9 56597619 56597778 -67478394 + B2_Mm2 SINE B2 36 195 0 1 1016 226 306 37 111 chr9 56597816 56597832 -67478340 + B1F SINE Alu 20 29 -120 1 1016 4536 117 98 5 chr9 56597832 56598504 -67477668 + RMER19A LTR ERVK 3 737 0 1 1016 314 326 0 22 chr9 56598504 56598595 -67477577 + PB1D10 SINE Alu 28 116 -1 1 1016 216 0 0 0 chr9 56598883 56598907 -67477265 + (TTAGGG)n Simple_repeat Simple_repeat 5 28 0 1 1016 266 175 17 17 chr9 56599110 56599168 -67477004 + HAL1 LINE L1 1578 1635 -872 1 1016 331 315 53 26 chr9 56599316 56599430 -67476742 + PB1D10 SINE Alu 1 117 0 1 1016 333 0 0 0 chr9 56600000 56600037 -67476135 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1016 322 280 129 0 chr9 56600148 56600241 -67475931 - L2b LINE L2 -2 3373 3269 1 1016 371 38 0 19 chr9 56604443 56604497 -67471675 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1016 189 384 0 0 chr9 56606440 56606513 -67469659 - MIR SINE MIR -57 205 133 1 1016 303 296 59 59 chr9 56606763 56606932 -67469240 - MLT1C LTR MaLR -32 435 267 1 1016 253 315 90 0 chr9 56607022 56607133 -67469039 - MLT1C LTR MaLR -384 121 1 1 1016 303 289 166 25 chr9 56607314 56607419 -67468753 + L2 LINE L2 2642 2769 -650 1 1016 212 0 0 35 chr9 56607419 56607448 -67468724 + (TCC)n Simple_repeat Simple_repeat 2 29 0 1 1016 303 289 166 25 chr9 56607448 56607583 -67468589 + L2 LINE L2 2770 2916 -503 1 1016 601 171 11 0 chr9 56608640 56608815 -67467357 + CT-rich Low_complexity Low_complexity 2 178 0 1 1016 276 281 0 16 chr9 56608816 56608939 -67467233 + (TCTCTG)n Simple_repeat Simple_repeat 2 122 0 1 1016 396 0 0 0 chr9 56610265 56610309 -67465863 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1016 1839 188 47 69 chr9 56610544 56610966 -67465206 - MTD LTR MaLR -4 415 3 1 1016 292 341 44 0 chr9 56614407 56614498 -67461674 - MIRc SINE MIR -139 129 35 1 1016 459 0 0 0 chr9 56615772 56615823 -67460349 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1016 226 344 95 26 chr9 56616081 56616293 -67459879 - MIR3 SINE MIR -23 239 10 1 1016 1231 54 0 0 chr9 56616414 56616562 -67459610 + B1_Mus1 SINE Alu 1 148 0 1 1016 234 0 0 0 chr9 56616566 56616592 -67459580 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 1 1016 1437 17 0 16 chr9 56616592 56616775 -67459397 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1 1016 207 305 102 70 chr9 56616787 56616851 -67459321 - MIRc SINE MIR -36 232 168 1 1016 1348 93 55 0 chr9 56616851 56617034 -67459138 + B2_Mm2 SINE B2 1 193 -2 1 1016 214 305 102 70 chr9 56617034 56617156 -67459016 - MIRb SINE MIR -101 167 40 1 1016 230 290 0 0 chr9 56617429 56617491 -67458681 + PB1D10 SINE Alu 42 103 -14 1 1016 226 308 46 0 chr9 56617495 56617560 -67458612 + ID4_ SINE ID 2 69 -14 1 1016 346 283 26 94 chr9 56617565 56617756 -67458416 + MLT1C LTR MaLR 27 204 -263 1 1016 192 77 0 0 chr9 56617757 56617783 -67458389 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1016 555 304 52 0 chr9 56617787 56617922 -67458250 + RSINE1 SINE B4 5 146 -19 1 1016 186 319 190 0 chr9 56618639 56618755 -67457417 + L3 LINE CR1 4256 4393 -96 1 1016 528 284 97 44 chr9 56618793 56618999 -67457173 + B4 SINE B4 3 219 -73 1 1016 261 0 0 0 chr9 56619002 56619031 -67457141 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1016 1450 247 71 0 chr9 56619147 56619487 -67456685 + ORR1D2 LTR MaLR 1 364 -6 1 1016 199 344 75 0 chr9 56619889 56619982 -67456190 - L2 LINE L2 -498 2921 2822 1 1016 857 82 47 0 chr9 56620055 56620226 -67455946 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1 1016 186 43 0 0 chr9 56620226 56620249 -67455923 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1016 773 268 43 0 chr9 56621753 56621988 -67454184 + L1ME4a LINE L1 5699 5943 -181 1 15 195 312 12 49 chr9 56623078 56623159 -67453013 - L3 LINE CR1 -942 3547 3470 1 1017 278 270 122 34 chr9 56623642 56623759 -67452413 + MIRc SINE MIR 22 151 -117 1 1017 624 27 0 0 chr9 56624136 56624210 -67451962 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1017 401 318 72 13 chr9 56624274 56624510 -67451662 + MER113A DNA MER1_type 3 252 -62 1 1017 1435 107 9 0 chr9 56626487 56626703 -67449469 + URR1A DNA MER1_type 9 226 0 1 1017 339 297 0 0 chr9 56627795 56627886 -67448286 + L1M5 LINE L1 5116 5206 -940 1 1017 1359 277 58 36 chr9 56627902 56628452 -67447720 + L1M5 LINE L1 5256 5817 -307 1 1017 192 77 0 0 chr9 56629348 56629374 -67446798 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 1 1017 495 0 0 0 chr9 56629786 56629841 -67446331 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1017 858 87 0 0 chr9 56629841 56629978 -67446194 + (TG)n Simple_repeat Simple_repeat 1 138 0 1 1017 682 288 0 12 chr9 56629982 56630144 -67446028 - B3A SINE B2 -38 160 1 1 1017 191 296 24 36 chr9 56631954 56632038 -67444134 + MIR3 SINE MIR 106 188 -20 1 1017 290 260 93 28 chr9 56634662 56634769 -67441403 + MIRb SINE MIR 88 201 -67 1 1017 456 109 45 0 chr9 56635866 56635976 -67440196 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 1 1017 231 36 0 0 chr9 56635978 56636006 -67440166 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1017 236 269 64 0 chr9 56636439 56636517 -67439655 + MIRm SINE MIR 64 146 -130 1 1017 291 306 0 0 chr9 56636578 56636676 -67439496 + L1MC5 LINE L1 7696 7793 -168 1 1017 271 338 80 12 chr9 56638064 56638226 -67437946 - MIRc SINE MIR -31 237 65 1 1017 827 240 54 0 chr9 56638667 56638871 -67437301 + B3 SINE B2 1 215 -1 1 1017 634 265 0 45 chr9 56638926 56639080 -67437092 + ID_B1 SINE B4 78 224 0 1 1017 254 356 75 7 chr9 56638953 56639100 -67437072 - YREP_Mm Unknown Unknown -1519 293 137 1 1017 304 400 0 37 chr9 56639227 56639430 -67436742 - MIRb SINE MIR -13 195 6 1 1017 186 300 110 11 chr9 56639961 56640052 -67436120 + MIRc SINE MIR 40 139 -129 2 1017 181 254 141 0 chr9 56640101 56640172 -67436000 - MIRm SINE MIR -103 173 93 2 1017 191 234 71 86 chr9 56640406 56640476 -67435696 - L3 LINE CR1 -3377 1112 1044 2 1017 261 171 0 0 chr9 56640700 56640755 -67435417 - L2c LINE L2 0 3426 3344 2 1017 214 222 74 0 chr9 56641589 56641643 -67434529 + ID4 SINE ID 26 83 0 2 1017 441 0 0 0 chr9 56643945 56643994 -67432178 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1017 314 314 76 0 chr9 56645121 56645226 -67430946 + MIR3 SINE MIR 82 194 -14 2 1017 504 181 11 11 chr9 56646048 56646143 -67430029 + B1_Mur3 SINE Alu 9 103 -46 2 1017 298 238 17 118 chr9 56646143 56646157 -67430015 + MT2B LTR ERVL 205 272 -329 2 1017 214 341 189 7 chr9 56647744 56648117 -67428055 - L2b LINE L2 -113 3262 2830 2 1017 640 196 6 12 chr9 56649551 56649711 -67426461 + GA-rich Low_complexity Low_complexity 2 160 0 2 1017 202 319 86 21 chr9 56650693 56650786 -67425386 - MIR SINE MIR -107 155 57 2 1017 21 0 0 0 chr9 56651047 56651068 -67425104 + AT_rich Low_complexity Low_complexity 1 21 0 2 1017 358 286 20 0 chr9 56651650 56651748 -67424424 + MIRb SINE MIR 36 135 -133 2 1017 1259 34 0 0 chr9 56651762 56651908 -67424264 + B1_Mm SINE Alu 2 147 0 2 1017 234 0 0 0 chr9 56651908 56651934 -67424238 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1017 192 72 4 0 chr9 56651991 56652024 -67424148 + L2b LINE L2 3127 3160 -227 2 1017 401 0 20 0 chr9 56652066 56652115 -67424057 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1017 181 267 33 16 chr9 56652169 56652230 -67423942 + MIRb SINE MIR 37 98 -170 2 1017 348 247 145 13 chr9 56652238 56652390 -67423782 + L2 LINE L2 2430 2601 -818 2 1017 493 298 12 12 chr9 56653080 56653243 -67422929 + MIR SINE MIR 96 258 -4 2 1017 373 345 146 6 chr9 56654079 56654257 -67421915 - MIR SINE MIR -28 234 32 2 1017 725 230 14 122 chr9 56654695 56654727 -67421445 + B3A SINE B2 9 26 -172 2 1017 5374 68 3 49 chr9 56654727 56655454 -67420718 + L1_Mus2 LINE L1 5869 6562 -4 2 1017 372 22 0 0 chr9 56655454 56655499 -67420673 + (CATA)n Simple_repeat Simple_repeat 2 46 0 2 1017 725 230 14 122 chr9 56655499 56655663 -67420509 + B3A SINE B2 27 183 -15 2 1017 396 0 0 0 chr9 56655663 56655707 -67420465 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1017 725 230 14 122 chr9 56655707 56655726 -67420446 + B3A SINE B2 184 198 0 2 1017 214 234 92 15 chr9 56656536 56656601 -67419571 - MIRm SINE MIR -130 146 77 2 1017 1015 31 0 15 chr9 56656706 56656740 -67419432 + (GAA)n Simple_repeat Simple_repeat 3 36 0 2 1017 1193 101 6 0 chr9 56656740 56656919 -67419253 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1017 1015 31 0 15 chr9 56656919 56656943 -67419229 + (GAA)n Simple_repeat Simple_repeat 1 24 0 2 1017 1547 0 11 0 chr9 56656943 56657121 -67419051 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1017 1015 31 0 15 chr9 56657121 56657194 -67418978 + (GAA)n Simple_repeat Simple_repeat 1 73 0 2 1017 617 195 93 0 chr9 56657963 56658081 -67418091 + RSINE1 SINE B4 18 146 -19 2 1017 25 51 0 0 chr9 56658104 56658143 -67418029 + AT_rich Low_complexity Low_complexity 1 39 0 2 1017 930 244 5 19 chr9 56658169 56658378 -67417794 + B3 SINE B2 6 211 -5 2 1017 378 0 0 0 chr9 56658706 56658748 -67417424 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1017 237 362 85 21 chr9 56659336 56659477 -67416695 - MIR3 SINE MIR -41 167 18 2 1017 333 312 57 14 chr9 56661003 56661143 -67415029 + MIR SINE MIR 10 155 -107 2 1017 352 109 47 0 chr9 56661868 56661932 -67414240 - HAL1-3A_ME LINE L1 -816 2042 1976 2 1017 243 0 0 0 chr9 56661932 56661959 -67414213 + (CG)n Simple_repeat Simple_repeat 1 27 0 2 1017 227 253 179 12 chr9 56663014 56663098 -67413074 + MER5A1 DNA MER1_type 33 130 -36 2 1017 275 281 78 25 chr9 56663100 56663218 -67412954 + MIRc SINE MIR 58 190 -78 2 1017 1253 28 0 0 chr9 56663263 56663404 -67412768 + B1_Mus2 SINE Alu 1 141 -6 2 1017 468 0 0 0 chr9 56663406 56663458 -67412714 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1017 257 114 0 103 chr9 56663494 56663572 -67412600 + B2_Mm2 SINE B2 120 189 -6 2 1017 517 275 49 7 chr9 56663575 56663718 -67412454 + MLT1A0 LTR MaLR 217 365 0 2 1017 1435 50 45 0 chr9 56663929 56664108 -67412064 - B2_Mm2 SINE B2 -7 188 2 2 1017 449 439 8 8 chr9 56664218 56664482 -67411690 + L1MEd LINE L1 867 1130 -4989 2 1017 904 184 137 0 chr9 56664583 56664773 -67411399 + B3 SINE B2 1 216 0 2 1017 826 282 184 0 chr9 56664786 56665063 -67411109 - MTD LTR MaLR -26 393 66 2 1017 423 366 75 70 chr9 56665296 56665766 -67410406 + L1MEd LINE L1 1346 1817 -4332 2 1017 881 311 28 11 chr9 56666022 56666386 -67409786 - L1M3 LINE L1 -1355 4791 4422 2 1017 216 269 0 37 chr9 56666431 56666485 -67409687 - ID SINE ID -171 53 2 2 1017 391 143 0 14 chr9 56666510 56666581 -67409591 - PB1D10 SINE Alu -38 79 10 2 1017 287 236 27 14 chr9 56666523 56666596 -67409576 - B4A SINE B4 -141 151 78 2 1017 1131 263 127 13 chr9 56666597 56666990 -67409182 - L1M3 LINE L1 -1744 4396 3953 2 1017 1213 61 0 0 chr9 56666990 56667137 -67409035 - B1_Mus1 SINE Alu 0 148 2 2 1017 1111 264 126 13 chr9 56667137 56667201 -67408971 - L1M3 LINE L1 -2188 3952 3888 2 1017 778 220 71 33 chr9 56667237 56667273 -67408899 + ID SINE ID 35 68 -156 2 1017 3092 61 0 38 chr9 56667273 56667696 -67408476 + MTB_Mm LTR MaLR 1 407 0 2 1017 778 231 69 39 chr9 56667696 56667861 -67408311 + ID_B1 SINE B4 69 242 -50 2 1017 261 143 0 0 chr9 56667873 56667915 -67408257 - RSINE1 SINE B4 -121 44 3 2 1017 745 269 93 21 chr9 56668059 56668409 -67407763 - L1M3 LINE L1 -2471 3675 3289 2 1017 673 142 16 0 chr9 56668410 56668537 -67407635 + CT-rich Low_complexity Low_complexity 2 130 0 2 1017 744 134 81 15 chr9 56668538 56668674 -67407498 - B1_Mus2 SINE Alu 0 147 3 2 1017 1049 159 34 0 chr9 56668737 56668913 -67407259 + URR1B DNA MER1_type 1 182 -43 2 1017 1027 285 44 30 chr9 56668930 56669124 -67407048 - L1M3 LINE L1 -2906 3240 3036 2 1017 927 257 23 0 chr9 56669124 56669342 -67406830 - ID_B1 SINE B4 -1 223 1 2 1017 1027 285 44 30 chr9 56669342 56669642 -67406530 - L1M3 LINE L1 -3111 3035 2739 2 1017 395 352 83 6 chr9 56669660 56669932 -67406240 + L1MB4 LINE L1 5535 5827 -344 2 1017 610 234 29 0 chr9 56669933 56670070 -67406102 + B1_Mur1 SINE Alu 1 141 -8 2 1017 2997 46 20 27 chr9 56670082 56670483 -67405689 + MTB LTR MaLR 3 400 0 2 1017 224 275 0 42 chr9 56670543 56670615 -67405557 + BC1_Mm scRNA scRNA 24 92 -60 2 1017 389 320 58 10 chr9 56670892 56671097 -67405075 + L1MB4 LINE L1 5964 6178 -2 2 1017 323 294 19 10 chr9 56671264 56671367 -67404805 + RSINE1 SINE B4 38 141 -24 2 1017 401 81 16 0 chr9 56671367 56671429 -67404743 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1017 406 291 9 35 chr9 56671698 56671812 -67404360 - ID_B1 SINE B4 -5 219 109 2 1017 498 321 8 0 chr9 56671921 56672055 -67404117 - RSINE1 SINE B4 -29 136 2 2 1017 441 0 0 0 chr9 56673008 56673057 -67403115 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1017 477 0 0 0 chr9 56673057 56673109 -67403063 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1017 291 279 37 46 chr9 56673119 56673228 -67402944 + ID_B1 SINE B4 116 223 -1 2 1017 697 287 89 7 chr9 56674172 56674442 -67401730 + L1MB4 LINE L1 5797 6088 -92 2 1017 1415 64 5 5 chr9 56675314 56675503 -67400669 + B2_Mm2 SINE B2 2 190 -5 2 1017 198 143 0 0 chr9 56675720 56675755 -67400417 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 2 1017 303 359 24 49 chr9 56675790 56675995 -67400177 + L2c LINE L2 3188 3387 0 2 1017 219 139 0 0 chr9 56676368 56676404 -67399768 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1017 234 296 48 48 chr9 56676412 56676618 -67399554 + L1ME3B LINE L1 5735 5940 -300 2 1017 254 275 11 91 chr9 56676892 56676980 -67399192 + MLT1I LTR MaLR 325 405 -6 2 1017 378 256 25 1 chr9 56677285 56677381 -67398791 + RSINE1 SINE B4 1 98 -194 2 1017 21 0 0 0 chr9 56677521 56677542 -67398630 + AT_rich Low_complexity Low_complexity 1 21 0 2 1017 618 148 172 0 chr9 56677548 56677676 -67398496 + B1_Mur4 SINE Alu 1 150 0 2 1017 403 262 9 18 chr9 56677846 56677955 -67398217 - PB1D10 SINE Alu -9 108 1 2 1017 762 192 0 7 chr9 56678966 56679113 -67397059 + B1_Mur1 SINE Alu 3 148 -1 2 1017 1838 150 25 17 chr9 56679291 56679650 -67396522 - RLTR24 LTR ERV1 0 529 168 2 1017 369 0 0 0 chr9 56679667 56679708 -67396464 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 2 1017 343 142 0 22 chr9 56679722 56679788 -67396384 - B2_Mm2 SINE B2 -107 109 47 2 1017 1089 107 65 12 chr9 56679835 56680005 -67396167 - B2_Mm1t SINE B2 -14 179 1 2 1017 1092 151 16 0 chr9 56680009 56680194 -67395978 - RLTR24 LTR ERV1 -334 195 8 2 1017 472 256 30 15 chr9 56681454 56681585 -67394587 - MER102a DNA MER1_type -164 166 34 2 1017 341 159 12 19 chr9 56682131 56682246 -67393926 - B2_Mm2 SINE B2 0 195 43 2 1017 1213 87 35 0 chr9 56682289 56682462 -67393710 - B2_Mm1t SINE B2 -14 179 1 2 1017 906 212 40 10 chr9 56683457 56683657 -67392515 - B3 SINE B2 -6 210 5 2 1017 261 224 17 0 chr9 56683876 56683934 -67392238 - ID4 SINE ID -13 70 12 2 1017 381 284 42 0 chr9 56683979 56684074 -67392098 - PB1D9 SINE Alu -21 99 1 2 1017 233 256 21 118 chr9 56683994 56684087 -67392085 - MT2B LTR ERVL -362 239 156 2 1017 430 275 58 7 chr9 56684153 56684292 -67391880 - RSINE1 SINE B4 -13 152 7 2 1017 383 254 0 26 chr9 56684309 56684422 -67391750 - PB1D10 SINE Alu -4 113 4 2 1017 754 181 118 71 chr9 56684987 56685225 -67390947 - MTD LTR MaLR -1 418 170 2 1017 207 208 0 19 chr9 56685303 56685333 -67390839 + A-rich Low_complexity Low_complexity 5 33 0 2 1017 1224 75 6 28 chr9 56685333 56685493 -67390679 + B2_Mm1a SINE B2 1 161 -32 2 1017 459 0 0 0 chr9 56685493 56685544 -67390628 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3 1017 1224 75 6 28 chr9 56685544 56685562 -67390610 + B2_Mm1a SINE B2 162 175 -18 2 1017 207 208 0 19 chr9 56685562 56685585 -67390587 + A-rich Low_complexity Low_complexity 34 56 0 3 1017 195 69 0 0 chr9 56687233 56687262 -67388910 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1017 391 254 131 17 chr9 56689164 56689365 -67386807 + MIR3 SINE MIR 13 234 -28 3 1017 495 0 0 0 chr9 56689403 56689458 -67386714 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1017 334 286 119 0 chr9 56689460 56689586 -67386586 - MER2 DNA MER2_type -204 141 1 3 1017 278 335 152 0 chr9 56689623 56689781 -67386391 + MER113A DNA MER1_type 96 277 -37 3 1017 654 267 0 0 chr9 56690658 56690989 -67385183 + (CA)n Simple_repeat Simple_repeat 1 331 0 3 1017 210 260 0 0 chr9 56690990 56691040 -67385132 + (CATA)n Simple_repeat Simple_repeat 2 51 0 3 1017 277 235 162 10 chr9 56691183 56691282 -67384890 + MIR SINE MIR 41 154 -108 3 1017 216 262 58 23 chr9 56691796 56691882 -67384290 - MIR SINE MIR -55 153 65 3 1017 189 74 0 0 chr9 56692302 56692329 -67383843 + (CCCCAG)n Simple_repeat Simple_repeat 2 28 0 3 1017 207 100 0 0 chr9 56692624 56692654 -67383518 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1017 797 184 0 13 chr9 56693114 56693345 -67382827 + (TATG)n Simple_repeat Simple_repeat 1 227 0 3 1017 865 131 7 35 chr9 56693969 56694112 -67382060 + B1_Mur3 SINE Alu 3 141 -8 3 1017 195 42 0 0 chr9 56694219 56694243 -67381929 + (CCCCCA)n Simple_repeat Simple_repeat 4 27 0 3 1017 432 0 0 0 chr9 56694354 56694402 -67381770 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1017 383 198 167 59 chr9 56694644 56694746 -67381426 + PB1D10 SINE Alu 3 115 -2 3 1017 887 267 95 4 chr9 56694756 56695019 -67381153 + B4A SINE B4 2 288 -4 3 1017 390 172 0 0 chr9 56695070 56695134 -67381038 + B1_Mus2 SINE Alu 71 134 -13 3 1017 423 0 0 0 chr9 56695134 56695181 -67380991 + (TAAAA)n Simple_repeat Simple_repeat 1 47 0 3 1017 387 213 0 13 chr9 56695181 56695192 -67380980 + B1_Mur4 SINE Alu 138 148 -2 3 1017 1084 65 0 7 chr9 56695803 56695942 -67380230 + B1_Mus1 SINE Alu 1 138 -10 3 1017 345 191 97 11 chr9 56697527 56697620 -67378552 - B1_Mur1 SINE Alu 0 149 34 3 1017 200 214 0 23 chr9 56697949 56697992 -67378180 + MIRm SINE MIR 110 151 -125 3 1017 344 274 75 50 chr9 56698877 56699038 -67377134 - MIRb SINE MIR -48 220 56 3 1017 224 329 0 0 chr9 56699151 56699230 -67376942 + ID4_ SINE ID 2 80 -3 3 1017 296 48 0 23 chr9 56701439 56701482 -67374690 + (TCC)n Simple_repeat Simple_repeat 2 43 0 3 1017 1145 47 135 6 chr9 56701749 56701919 -67374253 - B2_Mm1a SINE B2 0 193 2 3 1017 715 267 23 19 chr9 56701987 56702201 -67373971 + B3 SINE B2 1 215 -1 3 1017 465 314 76 52 chr9 56702201 56702621 -67373551 + L2 LINE L2 1798 2227 -1192 3 1017 293 205 25 25 chr9 56702621 56702701 -67373471 + L1MC4 LINE L1 7290 7369 -673 3 1017 734 261 178 17 chr9 56702716 56702946 -67373226 + B4A SINE B4 18 284 -8 3 1017 274 214 247 0 chr9 56703016 56703105 -67373067 - RSINE1 SINE B4 -45 120 10 3 1017 696 155 15 8 chr9 56703121 56703251 -67372921 - B1_Mur2 SINE Alu -10 139 9 3 1017 288 291 109 74 chr9 56703325 56703555 -67372617 + L1MC4 LINE L1 7411 7648 -394 3 1017 560 189 141 10 chr9 56703574 56703738 -67372434 - B3 SINE B2 -19 176 2 3 1017 326 319 101 0 chr9 56703760 56703898 -67372274 + L1MC4 LINE L1 7703 7854 -188 3 1017 492 59 0 0 chr9 56703912 56703980 -67372192 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 3 1017 230 342 0 27 chr9 56703990 56704065 -67372107 + MT2B LTR ERVL 178 250 -351 3 1017 487 202 32 88 chr9 56704000 56704125 -67372047 + B1_Mus1 SINE Alu 30 147 -1 3 1017 463 226 9 0 chr9 56704131 56704237 -67371935 + L1MC4 LINE L1 7936 8042 0 3 1017 211 316 28 112 chr9 56704279 56704386 -67371786 + B4 SINE B4 51 148 -144 3 1017 417 54 0 0 chr9 56704398 56704454 -67371718 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1017 432 0 0 0 chr9 56704454 56704502 -67371670 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1017 825 220 6 11 chr9 56704739 56704918 -67371254 - ID_B1 SINE B4 -46 178 1 3 1017 407 320 102 10 chr9 56705170 56705366 -67370806 + B4A SINE B4 7 220 -72 3 1017 594 229 86 29 chr9 56705386 56705561 -67370611 + B3A SINE B2 3 187 -11 3 1017 395 286 87 0 chr9 56705596 56705722 -67370450 + RSINE1 SINE B4 2 138 -27 3 1017 474 18 0 0 chr9 56705726 56705781 -67370391 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1017 801 193 7 0 chr9 56705800 56705935 -67370237 + B1_Mur4 SINE Alu 3 138 -12 3 1017 1235 98 44 0 chr9 56705942 56706125 -67370047 + B2_Mm2 SINE B2 5 195 0 3 1017 328 256 10 72 chr9 56706132 56706158 -67370014 + B4A SINE B4 202 224 -68 3 1017 972 115 97 11 chr9 56706158 56706334 -67369838 + B2_Mm2 SINE B2 3 193 -2 3 1017 328 256 10 72 chr9 56706334 56706404 -67369768 + B4A SINE B4 225 292 0 3 1017 997 308 119 25 chr9 56706698 56707178 -67368994 - MLT1F LTR MaLR -17 531 7 3 1017 300 276 0 0 chr9 56707222 56707298 -67368874 - B4A SINE B4 -1 291 216 3 1017 438 291 124 11 chr9 56707311 56707488 -67368684 - B3A SINE B2 -1 197 1 3 1017 697 266 33 38 chr9 56707488 56707688 -67368484 - B4A SINE B4 -60 232 34 3 1017 213 281 167 8 chr9 56707966 56708089 -67368083 - MIR SINE MIR -127 141 4 3 1017 1204 41 0 0 chr9 56709236 56709383 -67366789 + B1_Mus1 SINE Alu 1 147 -1 3 1017 201 158 0 0 chr9 56709384 56709422 -67366750 + A-rich Low_complexity Low_complexity 1 38 0 3 1017 339 89 0 0 chr9 56710023 56710079 -67366093 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1017 434 298 9 0 chr9 56710094 56710208 -67365964 - ID_B1 SINE B4 -33 191 77 3 1017 259 244 89 13 chr9 56710243 56710322 -67365850 + RSINE1 SINE B4 2 86 -79 3 1017 1048 55 73 73 chr9 56710255 56710433 -67365739 + B2_Mm2 SINE B2 12 189 -6 3 1017 864 271 5 10 chr9 56710450 56710644 -67365528 - B3A SINE B2 0 198 6 3 1017 454 196 11 11 chr9 56710644 56710737 -67365435 - ID_B1 SINE B4 -129 95 3 3 1017 340 224 30 0 chr9 56710759 56710826 -67365346 - ID4 SINE ID -8 75 7 3 1017 181 242 0 0 chr9 56711408 56711441 -67364731 - L2b LINE L2 -10 3365 3333 3 1017 240 310 0 15 chr9 56711568 56711660 -67364512 - MIRb SINE MIR -15 261 167 3 1017 208 297 77 51 chr9 56711740 56711857 -67364315 + MIRm SINE MIR 33 152 -124 3 1017 241 293 170 37 chr9 56712219 56712400 -67363772 + MIRc SINE MIR 2 200 -62 3 1017 499 265 14 42 chr9 56714424 56714566 -67361606 + B1F SINE Alu 5 142 -7 3 1017 235 169 0 71 chr9 56714579 56714649 -67361523 + GA-rich Low_complexity Low_complexity 4 68 0 3 1017 228 67 40 0 chr9 56717011 56717053 -67359119 - MIRc SINE MIR -119 149 100 3 1017 234 0 0 0 chr9 56717319 56717345 -67358827 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1017 495 209 29 0 chr9 56718034 56718139 -67358033 + PB1D10 SINE Alu 2 109 -8 3 1017 182 37 0 36 chr9 56718142 56718170 -67358002 + (ATG)n Simple_repeat Simple_repeat 3 29 0 3 1017 804 220 17 76 chr9 56718177 56718413 -67357759 + ID_B1 SINE B4 3 224 0 3 1017 219 241 44 44 chr9 56721651 56721764 -67354408 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 3 1017 1123 197 34 0 chr9 56723434 56723642 -67352530 + B3 SINE B2 2 216 0 3 1017 306 190 17 0 chr9 56723812 56723870 -67352302 + tRNA-Ala-GCA tRNA tRNA 1 59 -16 3 1017 188 111 0 27 chr9 56723873 56723910 -67352262 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1017 288 137 0 0 chr9 56724099 56724150 -67352022 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 3 1017 189 229 0 0 chr9 56726485 56726533 -67349639 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1017 381 264 0 0 chr9 56726593 56726741 -67349431 + (CA)n Simple_repeat Simple_repeat 2 149 0 3 1017 414 0 0 0 chr9 56727470 56727516 -67348656 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 3 1017 344 341 59 79 chr9 56731970 56732260 -67343912 - MamGypLTR3 LTR Gypsy -32 807 524 3 1017 589 248 37 31 chr9 56732371 56732533 -67343639 + RSINE1 SINE B4 3 165 0 3 1017 428 168 10 0 chr9 56732533 56732634 -67343538 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 1017 658 177 0 0 chr9 56737148 56737261 -67338911 + B1_Mur4 SINE Alu 1 113 -37 3 1017 1257 99 81 0 chr9 56737362 56737534 -67338638 + B2_Mm2 SINE B2 1 186 -9 3 1017 324 0 0 0 chr9 56738443 56738479 -67337693 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1017 1052 118 6 6 chr9 56738479 56738649 -67337523 - B2_Mm2 SINE B2 -20 175 6 3 1017 591 190 78 0 chr9 56742983 56743099 -67333073 + PB1 SINE Alu 1 125 -2 3 1017 299 300 129 22 chr9 56743221 56743446 -67332726 - L2 LINE L2 -822 2597 2349 3 1017 282 278 0 14 chr9 56743810 56743883 -67332289 + ID4_ SINE ID 5 76 -7 3 1017 213 236 55 0 chr9 56743901 56743956 -67332216 + B1F SINE Alu 92 149 0 3 1017 180 0 0 0 chr9 56747650 56747670 -67328502 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1017 327 339 39 39 chr9 56748139 56748200 -67327972 + ID_B1 SINE B4 91 154 -70 3 1017 1251 120 22 0 chr9 56748200 56748383 -67327789 - B2_Mm2 SINE B2 -8 187 1 3 1017 327 339 39 39 chr9 56748383 56748450 -67327722 + ID_B1 SINE B4 155 219 -5 3 1017 198 0 0 0 chr9 56749222 56749244 -67326928 + (CCCTG)n Simple_repeat Simple_repeat 3 24 0 3 1017 441 0 0 0 chr9 56749367 56749416 -67326756 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1017 785 207 131 24 chr9 56749516 56749711 -67326461 + B3 SINE B2 2 189 -6 3 1017 1237 35 7 0 chr9 56749712 56749857 -67326315 + B1_Mus2 SINE Alu 1 146 -1 3 1017 815 134 0 56 chr9 56750253 56750395 -67325777 + B1_Mus1 SINE Alu 10 143 -5 3 1017 1728 21 0 0 chr9 56750417 56750609 -67325563 + B2_Mm1a SINE B2 2 193 0 4 1017 457 147 0 21 chr9 56750609 56750695 -67325477 + GA-rich Low_complexity Low_complexity 13 97 0 4 1017 1605 36 0 35 chr9 56750798 56750997 -67325175 + B2_Mm1a SINE B2 2 193 0 4 1017 456 252 45 9 chr9 56752045 56752157 -67324015 + PB1D10 SINE Alu 1 116 -1 4 1017 909 26 0 0 chr9 56752329 56752443 -67323729 + B1_Mus2 SINE Alu 29 142 -5 4 1017 300 53 0 0 chr9 56752448 56752486 -67323686 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 4 1017 180 0 0 0 chr9 56752506 56752526 -67323646 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 4 1017 422 283 9 17 chr9 56753090 56753205 -67322967 + PB1D10 SINE Alu 1 114 -3 4 1017 228 246 53 0 chr9 56753459 56753516 -67322656 - MIR SINE MIR -91 117 58 4 1017 1221 48 0 13 chr9 56753731 56753880 -67322292 - B1_Mus2 SINE Alu 0 147 1 4 127 645 184 0 0 chr9 56754036 56754194 -67321978 + (CA)n Simple_repeat Simple_repeat 1 158 0 4 1018 364 127 56 14 chr9 56754226 56754298 -67321874 + RSINE1 SINE B4 56 130 -35 4 1018 29 28 0 0 chr9 56754311 56754347 -67321825 + AT_rich Low_complexity Low_complexity 1 36 0 4 1018 862 131 0 8 chr9 56754353 56754484 -67321688 - B3 SINE B2 -86 130 1 4 1018 286 303 56 24 chr9 56754900 56755025 -67321147 + MIR3 SINE MIR 61 189 -19 4 1018 241 256 0 82 chr9 56755707 56755792 -67320380 - L2b LINE L2 -17 3358 3281 4 1018 470 207 71 9 chr9 56755831 56755943 -67320229 + ID_B1 SINE B4 101 219 -5 4 1018 334 202 0 97 chr9 56756073 56756096 -67320076 + ID_B1 SINE B4 140 223 -1 4 1018 401 157 14 0 chr9 56756096 56756166 -67320006 + B1F SINE Alu 79 149 0 4 1018 873 199 0 7 chr9 56756170 56756317 -67319855 + B1_Mus2 SINE Alu 1 146 -1 4 1018 316 299 45 27 chr9 56756333 56756443 -67319729 + L1M5 LINE L1 3073 3184 -2962 4 1018 456 263 0 10 chr9 56756767 56756867 -67319305 + ID_B1 SINE B4 122 220 -4 4 1018 441 0 0 0 chr9 56756899 56756948 -67319224 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1018 464 301 42 26 chr9 56757751 56757802 -67318370 + B4 SINE B4 36 225 -63 4 1018 906 88 81 0 chr9 56757802 56757938 -67318234 + B1_Mus1 SINE Alu 2 148 0 4 1018 1972 155 78 8 chr9 56757948 56758318 -67317854 + RMER10B LTR ERVL 1 396 -2 4 1018 457 231 9 61 chr9 56758663 56758778 -67317394 - B1F SINE Alu 0 149 41 4 1018 192 300 0 0 chr9 56758945 56758995 -67317177 - L2b LINE L2 -6 3369 3320 4 1018 1361 96 16 11 chr9 56759283 56759473 -67316699 - B2_Mm2 SINE B2 -4 191 1 4 1018 482 283 28 0 chr9 56761049 56761155 -67315017 + PB1D7 SINE Alu 1 109 -11 4 1018 941 169 0 7 chr9 56761155 56761303 -67314869 + B1_Mus1 SINE Alu 1 148 0 4 1018 524 156 67 0 chr9 56763405 56763495 -67312677 - B1_Mur2 SINE Alu -51 98 3 4 1018 273 241 46 92 chr9 56763419 56763506 -67312666 - MT2B LTR ERVL -362 239 157 4 1018 645 231 18 65 chr9 56764314 56764489 -67311683 + B4A SINE B4 3 168 -124 4 1018 425 191 36 0 chr9 56764414 56764498 -67311674 + PB1D9 SINE Alu 6 92 -28 4 1018 731 195 58 79 chr9 56764515 56764704 -67311468 + B4A SINE B4 108 292 0 4 1018 200 352 72 49 chr9 56765686 56765949 -67310223 + L2c LINE L2 3055 3323 -52 4 1018 724 243 26 42 chr9 56767578 56767767 -67308405 - B3A SINE B2 -6 192 7 4 1018 289 184 0 0 chr9 56767800 56767849 -67308323 - ID_B1 SINE B4 -3 221 173 4 1018 360 281 0 12 chr9 56767858 56767941 -67308231 - ID4_ SINE ID 0 83 2 4 1018 1444 72 0 6 chr9 56768394 56768575 -67307597 + B2_Mm2 SINE B2 3 182 -13 4 1018 288 170 0 0 chr9 56768578 56768631 -67307541 + GA-rich Low_complexity Low_complexity 2 54 0 4 1018 1678 31 0 5 chr9 56768749 56768941 -67307231 + B2_Mm1t SINE B2 2 192 -1 4 1018 1215 202 5 9 chr9 56769063 56769273 -67306899 + B3 SINE B2 1 209 -7 4 1018 1497 171 54 7 chr9 56769483 56769777 -67306395 + ORR1D1 LTR MaLR 1 308 -66 4 1018 242 301 114 0 chr9 56770218 56770341 -67305831 + MIR SINE MIR 122 258 -4 4 1018 249 139 0 0 chr9 56770364 56770407 -67305765 + (TATG)n Simple_repeat Simple_repeat 1 43 0 4 1018 587 130 0 10 chr9 56770485 56770586 -67305586 + (GGA)n Simple_repeat Simple_repeat 2 101 0 4 1018 214 343 18 37 chr9 56771990 56772099 -67304073 - MIR SINE MIR -57 151 45 4 1018 272 200 0 0 chr9 56775786 56775940 -67300232 + A-rich Low_complexity Low_complexity 1 154 0 4 1018 680 194 54 0 chr9 56777020 56777149 -67299023 + B1_Mur4 SINE Alu 3 138 -12 4 1018 525 32 0 0 chr9 56777193 56777256 -67298916 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1018 215 186 156 91 chr9 56777481 56777558 -67298614 + PB1D10 SINE Alu 35 116 -1 4 1018 263 322 0 22 chr9 56777618 56777707 -67298465 + B4A SINE B4 82 168 -124 4 1018 529 191 19 19 chr9 56777632 56777739 -67298433 + PB1D9 SINE Alu 9 115 -5 4 1018 455 258 129 0 chr9 56777847 56777979 -67298193 + B1F2 SINE Alu 1 149 0 4 1018 423 258 31 0 chr9 56778180 56778277 -67297895 - B1F2 SINE Alu -5 144 45 4 1018 299 294 45 45 chr9 56778569 56778701 -67297471 - B1F SINE Alu 0 149 18 4 1018 287 302 36 65 chr9 56779019 56779157 -67297015 - B4A SINE B4 0 292 159 4 1018 441 0 0 0 chr9 56779253 56779302 -67296870 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 4 1018 808 151 94 5 chr9 56779484 56779770 -67296402 - RLTR25B LTR ERVK 0 1028 610 4 1018 450 0 0 0 chr9 56779914 56779964 -67296208 + (TTA)n Simple_repeat Simple_repeat 3 52 0 4 1018 1133 83 0 0 chr9 56779964 56780120 -67296052 - B2_Mm2 SINE B2 -38 157 2 4 1018 2660 165 40 42 chr9 56781100 56781674 -67294498 - RLTR25A LTR ERVK -386 717 145 4 1018 339 191 0 0 chr9 56781696 56781764 -67294408 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1018 297 306 23 46 chr9 56781802 56781932 -67294240 - B4A SINE B4 -162 130 4 4 1018 632 219 36 14 chr9 56781954 56782093 -67294079 - B1_Mur2 SINE Alu 0 149 8 4 1018 330 170 0 0 chr9 56782405 56782458 -67293714 + PB1D10 SINE Alu 1 53 -64 4 1018 1236 35 0 0 chr9 56782492 56782633 -67293539 + B1_Mm SINE Alu 1 141 -6 4 1018 272 48 24 0 chr9 56782636 56782678 -67293494 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1018 724 173 0 8 chr9 56782681 56782830 -67293342 + B1_Mur1 SINE Alu 1 148 -1 4 1018 1724 162 103 30 chr9 56783007 56783304 -67292868 - RMER1B Other Other -2 1064 736 4 1018 2005 131 25 9 chr9 56783304 56783628 -67292544 - ORR1A4 LTR MaLR 0 329 1 4 1018 1724 162 103 30 chr9 56783628 56783700 -67292472 - RMER1B Other Other -331 735 668 4 1018 543 198 50 0 chr9 56784088 56784209 -67291963 + B1_Mur2 SINE Alu 23 149 0 4 1018 255 301 33 66 chr9 56784216 56784337 -67291835 + PB1D10 SINE Alu 1 117 0 4 1018 824 184 52 23 chr9 56784546 56784718 -67291454 - B2_Mm2 SINE B2 -14 181 5 4 1018 709 117 171 47 chr9 56784880 56785050 -67291122 + B2_Mm2 SINE B2 1 191 -4 4 1018 607 197 72 14 chr9 56786622 56786761 -67289411 + B1_Mus1 SINE Alu 2 148 0 4 1018 405 0 0 0 chr9 56786902 56786947 -67289225 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1018 412 226 19 38 chr9 56786947 56787042 -67289130 - PB1D7 SINE Alu -9 111 15 4 1018 254 240 214 40 chr9 56787042 56787065 -67289107 - ID_B1 SINE B4 -9 215 75 4 1018 405 257 9 45 chr9 56787084 56787194 -67288978 + RSINE1 SINE B4 3 108 -57 4 1018 1366 97 38 0 chr9 56787249 56787434 -67288738 + B2_Mm2 SINE B2 2 193 -2 4 1018 268 216 0 0 chr9 56787811 56787865 -67288307 + B3 SINE B2 3 56 -139 4 1018 330 192 38 212 chr9 56787953 56788085 -67288087 + PB1D9 SINE Alu 1 109 -11 4 1018 311 291 87 10 chr9 56788199 56788303 -67287869 + B3A SINE B2 86 197 -1 4 1018 806 157 64 0 chr9 56788324 56788464 -67287708 + B1_Mur4 SINE Alu 2 150 0 4 1018 1177 62 0 0 chr9 56788492 56788636 -67287536 + B1_Mus2 SINE Alu 2 145 -2 4 1018 1298 164 226 0 chr9 56788712 56789017 -67287155 - RLTR14 LTR ERV1 -6 376 3 4 1018 772 273 28 23 chr9 56789050 56789264 -67286908 + B3 SINE B2 2 216 0 4 1018 808 178 13 27 chr9 56789398 56789548 -67286624 - B1_Mus1 SINE Alu 0 148 1 4 1018 456 278 48 0 chr9 56789572 56789698 -67286474 - B1_Mur1 SINE Alu -17 132 1 4 1018 817 156 22 0 chr9 56789763 56789898 -67286274 - B1_Mur2 SINE Alu -11 138 1 4 1018 449 282 16 33 chr9 56789903 56790024 -67286148 - PB1 SINE Alu -8 119 1 4 1018 685 232 14 0 chr9 56790060 56790202 -67285970 + B1_Mur4 SINE Alu 2 145 -5 4 1018 668 256 29 86 chr9 56790206 56790390 -67285782 - B3A SINE B2 0 198 26 4 1018 2548 145 14 12 chr9 56790390 56790810 -67285362 + MTC LTR MaLR 1 421 0 4 1018 668 256 29 86 chr9 56790810 56790834 -67285338 - B3A SINE B2 -173 25 2 4 1018 223 236 67 40 chr9 56790866 56790941 -67285231 + PB1 SINE Alu 49 125 -2 4 1018 2527 126 206 10 chr9 56790971 56791460 -67284712 + RMER4B LTR ERVK 1 585 0 4 1018 892 221 38 24 chr9 56791460 56791669 -67284503 + B3 SINE B2 5 216 0 4 1018 1233 48 0 0 chr9 56792741 56792888 -67283284 + B1_Mus2 SINE Alu 1 147 0 4 1018 603 228 79 0 chr9 56792907 56793034 -67283138 - B1_Mur2 SINE Alu -12 137 1 4 1018 1248 263 62 60 chr9 56793153 56793651 -67282521 - RLTR19 LTR ERVK 0 499 1 4 1018 590 225 0 0 chr9 56793947 56794067 -67282105 + PB1D7 SINE Alu 1 120 0 5 1018 2030 61 203 3 chr9 56794144 56794440 -67281732 + L1Md_F2 LINE L1 5232 5586 -297 5 1018 7778 50 29 6 chr9 56794440 56795413 -67280759 + L1Md_F2 LINE L1 5587 6581 -1 5 1018 273 213 88 0 chr9 56795415 56795496 -67280676 - B2_Mm2 SINE B2 -35 181 85 5 1018 8876 58 16 57 chr9 56795569 56796012 -67280160 - RLTR22_Mus LTR ERVK -486 1322 887 5 1018 1653 37 0 0 chr9 56796012 56796203 -67279969 + B2_Mm1t SINE B2 1 191 -2 5 1018 8876 58 16 57 chr9 56796203 56796490 -67279682 - RLTR22_Mus LTR ERVK -922 886 602 5 1018 1214 48 0 0 chr9 56796490 56796637 -67279535 + B1_Mm SINE Alu 1 147 0 5 1018 8876 58 16 57 chr9 56796637 56797178 -67278994 - RLTR22_Mus LTR ERVK -1207 601 75 5 1018 1265 40 0 0 chr9 56797178 56797326 -67278846 + B1_Mus1 SINE Alu 1 148 0 5 1018 8876 58 16 57 chr9 56797326 56797431 -67278741 - RLTR22_Mus LTR ERVK -1734 74 1 5 1018 487 221 39 0 chr9 56797471 56797575 -67278597 - B1_Mus1 SINE Alu -35 113 6 5 1018 861 25 0 63 chr9 56797947 56798073 -67278099 + B1_Mm SINE Alu 9 126 -21 5 1018 477 50 0 0 chr9 56798073 56798133 -67278039 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1018 1121 74 22 11 chr9 56798133 56798311 -67277861 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1018 657 118 168 30 chr9 56799317 56799448 -67276724 + B1_Mur3 SINE Alu 1 149 0 5 1018 622 213 112 56 chr9 56799610 56799789 -67276383 - B3 SINE B2 0 216 28 5 1018 1420 66 11 11 chr9 56799825 56800010 -67276162 - B2_Mm2 SINE B2 -10 185 1 5 1018 301 198 185 0 chr9 56800084 56800165 -67276007 + L1MB2 LINE L1 6035 6130 -41 5 1018 265 307 0 13 chr9 56800257 56800333 -67275839 - ID4_ SINE ID -5 78 4 5 1018 658 243 131 20 chr9 56800340 56800528 -67275644 - B3 SINE B2 -30 186 3 5 1018 429 210 7 101 chr9 56800543 56800681 -67275491 - ID_B1 SINE B4 0 224 100 5 1018 293 289 35 69 chr9 56800708 56800853 -67275319 - B1F SINE Alu -1 148 9 5 1018 227 273 12 61 chr9 56800853 56800935 -67275237 + MurSatRep1 Unknown Unknown 136 213 -1924 5 1018 1134 82 0 0 chr9 56801155 56801302 -67274870 - B1_Mus2 SINE Alu 0 147 1 5 1018 377 176 108 21 chr9 56801334 56801427 -67274745 - PB1D9 SINE Alu -3 117 17 5 1018 322 212 26 0 chr9 56801441 56801535 -67274637 - Lx8 LINE L1 -1722 5751 5657 5 1018 607 192 8 8 chr9 56801539 56801660 -67274512 + B3 SINE B2 96 216 0 5 1018 191 0 0 94 chr9 56801690 56801722 -67274450 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1018 1135 77 0 14 chr9 56801845 56801990 -67274182 - B1_Mm SINE Alu 0 147 5 5 1018 1145 186 108 12 chr9 56801993 56802244 -67273928 - MTD LTR MaLR -3 416 142 5 1018 688 208 23 15 chr9 56802254 56802386 -67273786 + Lx5 LINE L1 6548 6680 -370 5 1018 298 200 211 0 chr9 56802367 56802462 -67273710 + Lx4B LINE L1 6938 7052 -6 5 1018 335 205 22 98 chr9 56802462 56802533 -67273639 - MTD LTR MaLR -291 128 67 5 1018 381 194 355 18 chr9 56802533 56802643 -67273529 - B1_Mur2 SINE Alu -1 148 2 5 1018 335 205 22 98 chr9 56802643 56802663 -67273509 - MTD LTR MaLR -353 66 45 5 1018 1141 74 134 6 chr9 56802680 56802844 -67273328 - B2_Mm2 SINE B2 -9 186 2 5 1018 564 263 83 34 chr9 56802863 56803068 -67273104 - B3 SINE B2 0 216 2 5 1018 351 190 0 48 chr9 56803070 56803153 -67273019 - MTD LTR MaLR -340 79 1 5 1018 463 225 36 157 chr9 56803153 56803355 -67272817 - Lx8 LINE L1 -667 5636 5438 5 1018 1449 73 0 35 chr9 56803355 56803554 -67272618 - B2_Mm2 SINE B2 -3 192 1 5 1018 457 225 36 157 chr9 56803554 56803580 -67272592 - L1M1 LINE L1 -863 5440 5440 5 1018 636 221 182 0 chr9 56803580 56803761 -67272411 - B3 SINE B2 -2 214 1 5 1018 457 164 0 95 chr9 56803761 56803835 -67272337 - Lx8 LINE L1 -722 5440 5374 5 1018 550 288 33 0 chr9 56803835 56803988 -67272184 - RSINE1 SINE B4 -6 159 2 5 1018 1164 74 126 56 chr9 56804102 56804153 -67272019 - ORR1A2 LTR MaLR 0 327 287 5 1018 1167 48 149 6 chr9 56804153 56804176 -67271996 - B2_Mm1a SINE B2 -1 192 159 5 1018 306 0 0 0 chr9 56804176 56804210 -67271962 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 5 1018 1167 48 149 6 chr9 56804210 56804354 -67271818 - B2_Mm1a SINE B2 -35 158 1 5 1018 1164 74 126 56 chr9 56804354 56804517 -67271655 - ORR1A2 LTR MaLR -41 286 98 5 1018 248 0 0 98 chr9 56804539 56804557 -67271615 + (T)n Simple_repeat Simple_repeat 1 18 0 5 1018 1191 61 0 0 chr9 56804557 56804704 -67271468 - B1_Mus2 SINE Alu 0 147 1 5 1018 248 0 0 98 chr9 56804704 56804726 -67271446 + (T)n Simple_repeat Simple_repeat 1 19 0 5 1018 222 62 0 0 chr9 56805725 56805757 -67270415 + (CACCT)n Simple_repeat Simple_repeat 4 35 0 5 1018 201 74 0 0 chr9 56805761 56805788 -67270384 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1018 1119 101 0 0 chr9 56805788 56805936 -67270236 - B1_Mus1 SINE Alu 0 148 1 5 1018 656 250 6 48 chr9 56806149 56806317 -67269855 + RSINE1 SINE B4 4 164 -1 5 1018 589 233 142 54 chr9 56806453 56806657 -67269515 + B4 SINE B4 2 223 -69 5 1018 911 25 25 0 chr9 56806538 56806659 -67269513 + B1_Mm SINE Alu 24 147 0 5 1018 479 321 76 5 chr9 56806684 56806869 -67269303 + B4A SINE B4 95 292 0 5 1018 455 287 33 0 chr9 56806977 56807099 -67269073 - ID_B1 SINE B4 -94 130 5 5 1018 663 85 242 25 chr9 56807268 56807388 -67268784 - B1_Mus1 SINE Alu 0 148 3 5 1018 1111 72 30 18 chr9 56807497 56807666 -67268506 + B2_Mm2 SINE B2 1 171 -24 5 1018 308 73 0 52 chr9 56807686 56807744 -67268428 + B2_Mm2 SINE B2 120 174 -21 5 1018 186 128 0 0 chr9 56807744 56807783 -67268389 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1018 1168 61 0 39 chr9 56807808 56807962 -67268210 - B1_Mus1 SINE Alu 0 148 1 5 1018 438 103 0 0 chr9 56807974 56808032 -67268140 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1018 822 141 6 13 chr9 56808033 56808191 -67267981 + A-rich Low_complexity Low_complexity 4 160 0 5 1018 539 271 56 28 chr9 56808200 56808344 -67267828 + B1_Mur1 SINE Alu 1 148 -1 5 1018 579 239 8 0 chr9 56808384 56808501 -67267671 + RSINE1 SINE B4 23 140 -25 5 1018 378 129 0 0 chr9 56808534 56808596 -67267576 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1018 1036 141 20 20 chr9 56808640 56808835 -67267337 - B2_Mm2 SINE B2 0 195 1 5 1018 1297 77 55 0 chr9 56808964 56809147 -67267025 - B2_Mm2 SINE B2 0 195 3 5 1018 710 257 44 55 chr9 56809240 56809350 -67266822 + B3A SINE B2 2 117 -81 5 1018 1110 148 145 20 chr9 56809350 56809550 -67266622 - URR1B DNA MER1_type 0 225 1 5 1018 710 257 44 55 chr9 56809550 56809620 -67266552 + B3A SINE B2 118 180 -18 5 1018 230 264 28 0 chr9 56809628 56809700 -67266472 + B1F SINE Alu 76 149 0 5 1018 865 179 0 0 chr9 56809704 56809849 -67266323 + B1_Mur2 SINE Alu 5 149 0 5 1018 627 217 43 7 chr9 56810129 56810268 -67265904 - B1_Mur2 SINE Alu 0 149 6 5 1018 670 216 0 25 chr9 56811098 56811217 -67264955 + B1_Mur2 SINE Alu 1 116 -33 5 1018 453 19 0 0 chr9 56811233 56811287 -67264885 + (CAAAC)n Simple_repeat Simple_repeat 1 54 0 5 1018 278 262 0 32 chr9 56811461 56811524 -67264648 - ID SINE ID -163 61 1 5 1018 315 280 130 0 chr9 56811544 56811644 -67264528 - PB1D9 SINE Alu -5 115 3 5 1018 461 192 124 8 chr9 56811656 56811777 -67264395 - B1_Mur1 SINE Alu -5 144 10 5 1018 405 221 0 16 chr9 56812209 56812315 -67263857 - B3A SINE B2 -94 101 2 5 1018 225 158 0 0 chr9 56812315 56812353 -67263819 - B3A SINE B2 -157 41 4 5 1018 454 301 75 0 chr9 56812393 56812526 -67263646 - ID_B1 SINE B4 -3 221 79 5 1018 528 242 71 42 chr9 56812549 56812827 -67263345 - RLTR15 LTR ERVK -65 294 48 5 1018 223 175 36 36 chr9 56812875 56812958 -67263214 + (TATAA)n Simple_repeat Simple_repeat 5 87 0 5 1018 322 91 81 0 chr9 56812959 56813058 -67263114 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 1018 232 156 22 0 chr9 56813064 56813109 -67263063 - L1M LINE L1 -810 5370 5325 5 1018 575 261 99 0 chr9 56813184 56813395 -67262777 - L1MB8 LINE L1 -274 5904 5673 5 1018 259 194 101 89 chr9 56813649 56813728 -67262444 - ID4_ SINE ID -3 80 1 5 1018 31 26 0 0 chr9 56813903 56813941 -67262231 + AT_rich Low_complexity Low_complexity 1 38 0 5 1018 1615 184 111 16 chr9 56813956 56814326 -67261846 + MTD LTR MaLR 1 405 -14 5 1018 676 290 7 0 chr9 56814332 56814487 -67261685 - RSINE1 SINE B4 -6 159 4 5 1018 873 150 18 3 chr9 56814519 56814690 -67261482 - B3 SINE B2 -11 182 1 5 1018 852 260 49 5 chr9 56814720 56814925 -67261247 - B3 SINE B2 0 216 3 5 1018 860 264 30 0 chr9 56815062 56815263 -67260909 + B3 SINE B2 4 210 -6 5 1018 1008 107 13 0 chr9 56815421 56815570 -67260602 - Lx2 LINE L1 -72 6925 6775 5 1018 1949 81 8 0 chr9 56815568 56815827 -67260345 - Lx2 LINE L1 -352 6645 6385 5 1018 3202 58 5 2 chr9 56815831 56816226 -67259946 + MTA_Mm LTR MaLR 1 396 0 5 1018 319 214 76 33 chr9 56816294 56816386 -67259786 - B1_Mur1 SINE Alu -16 133 38 5 1018 188 79 53 0 chr9 56816394 56816432 -67259740 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1018 421 248 41 66 chr9 56816433 56816554 -67259618 - PB1D9 SINE Alu -1 119 2 5 1018 435 127 13 0 chr9 56816613 56816697 -67259475 - B1_Mur2 SINE Alu -23 127 42 5 1018 1185 75 0 0 chr9 56816707 56816854 -67259318 - B1_Mus1 SINE Alu 0 148 2 5 1018 653 257 103 20 chr9 56816930 56817125 -67259047 + B3 SINE B2 1 211 -5 5 1018 821 147 0 0 chr9 56817302 56817431 -67258741 - B1_Mus1 SINE Alu -14 134 6 5 1018 437 286 0 0 chr9 56817435 56817540 -67258632 + ID_B1 SINE B4 99 203 -21 5 1018 295 352 76 0 chr9 56817533 56817638 -67258534 - PB1 SINE Alu -8 119 7 5 1018 400 314 29 65 chr9 56818567 56818737 -67257435 + RSINE1 SINE B4 2 165 0 5 1018 2333 123 49 103 chr9 56818834 56818905 -67257267 - MTC LTR MaLR 0 421 365 5 1018 1230 55 0 0 chr9 56818905 56819051 -67257121 + B1_Mus2 SINE Alu 2 147 0 6 1018 2333 123 49 103 chr9 56819051 56819424 -67256748 - MTC LTR MaLR -57 364 1 5 1018 346 360 35 14 chr9 56819530 56819671 -67256501 - ID_B1 SINE B4 0 224 81 6 1018 1232 54 0 0 chr9 56819698 56819845 -67256327 + B1_Mus2 SINE Alu 1 147 0 6 1018 21 0 0 0 chr9 56819930 56819951 -67256221 + AT_rich Low_complexity Low_complexity 1 21 0 6 1018 837 255 28 28 chr9 56819951 56820165 -67256007 - B3 SINE B2 -2 214 1 6 1018 550 312 58 10 chr9 56820169 56820376 -67255796 - ID_B1 SINE B4 -2 222 6 6 1018 337 268 31 0 chr9 56820381 56820478 -67255694 - ID_B1 SINE B4 -7 217 118 6 1018 257 292 112 20 chr9 56821732 56821830 -67254342 - ID_B1 SINE B4 0 224 118 6 1018 1167 49 14 0 chr9 56822111 56822255 -67253917 + B1_Mus2 SINE Alu 2 147 0 6 1018 198 0 0 0 chr9 56822255 56822277 -67253895 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1018 329 281 145 23 chr9 56822277 56822408 -67253764 + B1F SINE Alu 1 147 -2 6 1018 419 269 27 55 chr9 56822416 56822526 -67253646 + ID_B1 SINE B4 85 191 -33 6 1018 284 266 40 121 chr9 56822526 56822540 -67253632 + PB1D10 SINE Alu 4 117 0 6 1018 1497 77 0 5 chr9 56822582 56822777 -67253395 + B2_Mm2 SINE B2 1 194 -1 6 1018 921 162 0 45 chr9 56823337 56823492 -67252680 - B1_Mus1 SINE Alu 0 148 1 6 1018 663 84 0 0 chr9 56823804 56823899 -67252273 + (TCCCC)n Simple_repeat Simple_repeat 3 97 0 6 1018 589 185 37 0 chr9 56823899 56824007 -67252165 - PB1D9 SINE Alu -6 114 3 6 1018 412 208 10 30 chr9 56824093 56824192 -67251980 - PB1D7 SINE Alu -1 119 23 6 1018 216 189 0 86 chr9 56824369 56824427 -67251745 + PB1D10 SINE Alu 60 112 -5 6 1018 642 197 180 31 chr9 56824435 56824629 -67251543 + ID_B1 SINE B4 1 223 -1 6 1018 253 272 58 37 chr9 56824829 56824969 -67251203 + MIR SINE MIR 32 181 -87 6 1018 201 182 0 0 chr9 56824972 56825005 -67251167 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 6 1018 802 179 0 7 chr9 56825013 56825154 -67251018 - B1_Mur4 SINE Alu -5 145 6 6 1018 553 202 58 8 chr9 56825184 56825304 -67250868 + B1_Mus1 SINE Alu 8 133 -15 6 1018 461 258 78 0 chr9 56825952 56826080 -67250092 - B1F SINE Alu -7 142 5 6 1018 470 170 0 11 chr9 56826080 56826175 -67249997 + CT-rich Low_complexity Low_complexity 3 96 0 6 1018 1092 113 38 110 chr9 56826184 56826350 -67249822 - B2_Mm2 SINE B2 -1 194 42 6 1018 1088 83 0 14 chr9 56826350 56826497 -67249675 - B1_Mus2 SINE Alu 0 147 3 6 1018 1092 113 38 110 chr9 56826497 56826539 -67249633 - B2_Mm2 SINE B2 -154 41 1 6 1018 561 68 0 0 chr9 56826539 56826613 -67249559 + (TTCTC)n Simple_repeat Simple_repeat 3 76 0 6 1018 877 188 0 0 chr9 56826616 56826760 -67249412 - B1_Mur4 SINE Alu -5 145 2 6 1018 878 173 124 10 chr9 56826766 56826959 -67249213 - B3 SINE B2 -1 215 1 6 1018 1190 27 7 26 chr9 56827150 56827301 -67248871 + B1_Mus1 SINE Alu 1 148 0 6 1018 254 260 51 111 chr9 56827426 56827543 -67248629 + PB1D10 SINE Alu 1 110 -7 6 1018 423 0 0 0 chr9 56827653 56827700 -67248472 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1018 2763 179 58 9 chr9 56827755 56828303 -67247869 - RMER15 LTR ERVL 0 575 1 6 1018 343 212 11 19 chr9 56828308 56828401 -67247771 - B1_Mur1 SINE Alu -9 140 27 6 1018 287 205 69 103 chr9 56828477 56828564 -67247608 - PB1D10 SINE Alu -5 112 29 6 1018 200 111 28 0 chr9 56829602 56829638 -67246534 + (GGGTG)n Simple_repeat Simple_repeat 5 41 0 6 1018 295 279 57 9 chr9 56829998 56830103 -67246069 - PB1D7 SINE Alu -1 119 10 6 1018 569 198 85 23 chr9 56830205 56830334 -67245838 + B1_Mur2 SINE Alu 1 137 -12 6 1018 423 0 0 0 chr9 56830341 56830388 -67245784 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 6 1018 1201 62 0 0 chr9 56832322 56832468 -67243704 + B1_Mus2 SINE Alu 2 147 0 6 1018 324 70 0 0 chr9 56832468 56832511 -67243661 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1018 1105 109 36 52 chr9 56832519 56832713 -67243459 + B2_Mm2 SINE B2 2 192 -3 6 1018 1114 91 0 0 chr9 56832717 56832860 -67243312 + B1_Mus1 SINE Alu 1 143 -5 6 1018 240 301 29 19 chr9 56833532 56833637 -67242535 - ID_B1 SINE B4 -33 191 86 6 1018 566 259 0 0 chr9 56833802 56833918 -67242254 + PB1D7 SINE Alu 5 120 0 6 1018 3151 217 75 27 chr9 56834250 56835023 -67241149 + RMER1C Other Other 518 1327 -15 6 1018 262 289 51 26 chr9 56835050 56835128 -67241044 + PB1D10 SINE Alu 10 89 -28 6 1018 246 151 113 0 chr9 56835127 56835180 -67240992 - MT2B LTR ERVL -387 214 156 6 1018 270 262 11 67 chr9 56835223 56835313 -67240859 - ID SINE ID -139 85 1 6 1018 382 190 0 48 chr9 56835415 56835498 -67240674 - B4A SINE B4 0 292 214 6 1018 233 240 53 0 chr9 56835502 56835577 -67240595 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 6 1018 31 26 0 0 chr9 56835649 56835687 -67240485 + AT_rich Low_complexity Low_complexity 1 38 0 6 1018 544 239 55 0 chr9 56835687 56835796 -67240376 - B1_Mur1 SINE Alu -32 117 3 6 1018 42 0 0 0 chr9 56835802 56835844 -67240328 + AT_rich Low_complexity Low_complexity 1 42 0 6 1018 798 204 0 20 chr9 56836044 56836194 -67239978 + B1_Mur1 SINE Alu 2 148 -1 6 1018 351 300 74 37 chr9 56836208 56836343 -67239829 + RSINE1 SINE B4 20 159 -6 6 1018 348 146 216 10 chr9 56836433 56836530 -67239642 + ID_B1 SINE B4 100 216 -8 6 1018 373 304 34 17 chr9 56836595 56836712 -67239460 + PB1D7 SINE Alu 1 119 -1 6 1018 1600 21 5 30 chr9 56836795 56836993 -67239179 - B2_Mm1t SINE B2 0 193 1 6 1018 195 42 0 0 chr9 56837315 56837339 -67238833 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 6 1018 399 316 60 0 chr9 56837589 56837722 -67238450 + ID_B1 SINE B4 84 224 0 6 1018 362 273 34 34 chr9 56837743 56837891 -67238281 + B1_Mur1 SINE Alu 1 148 -1 6 1018 786 179 50 0 chr9 56837906 56838046 -67238126 + B1_Mus2 SINE Alu 1 147 0 6 1018 441 0 0 0 chr9 56838048 56838097 -67238075 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1018 535 244 79 29 chr9 56838610 56838749 -67237423 - B1_Mus1 SINE Alu -2 146 1 6 1018 901 149 192 38 chr9 56838851 56839116 -67237056 - ORR1B1 LTR MaLR 0 329 24 6 1018 658 237 96 68 chr9 56839108 56839498 -67236674 + RMER4B LTR ERVK 80 448 -18 6 1018 3530 20 2 0 chr9 56839564 56839959 -67236213 - MTA_Mm LTR MaLR 0 396 1 6 1018 9844 16 0 0 chr9 56839959 56841057 -67235115 - MTA_Mm-int LTR MaLR 0 1098 1 6 1018 3541 20 2 0 chr9 56841057 56841452 -67234720 - MTA_Mm LTR MaLR 0 396 1 6 1018 349 273 15 1 chr9 56841492 56841603 -67234569 - B3 SINE B2 -81 114 1 6 1018 609 158 133 0 chr9 56841825 56841945 -67234227 + B1_Mur2 SINE Alu 6 141 -8 6 1018 26 0 0 0 chr9 56842048 56842074 -67234098 + AT_rich Low_complexity Low_complexity 1 26 0 6 1018 202 312 9 18 chr9 56842651 56842762 -67233410 + (CCCCG)n Simple_repeat Simple_repeat 5 114 0 6 1018 204 173 0 37 chr9 56842663 56842717 -67233455 + (CTCCG)n Simple_repeat Simple_repeat 2 53 0 6 1018 21 0 0 0 chr9 56843266 56843287 -67232885 + GC_rich Low_complexity Low_complexity 1 21 0 6 1018 656 167 333 0 chr9 56844588 56844750 -67231422 - B3 SINE B2 0 216 1 6 1018 1240 33 23 170 chr9 56844901 56845119 -67231053 - B2_Mm2 SINE B2 -5 190 5 6 1018 216 0 0 0 chr9 56845298 56845322 -67230850 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1018 729 160 0 77 chr9 56845322 56845478 -67230694 - B1_Mur4 SINE Alu 0 150 7 6 1018 24 0 0 0 chr9 56845489 56845513 -67230659 + AT_rich Low_complexity Low_complexity 1 24 0 6 1018 1174 68 0 0 chr9 56845637 56845785 -67230387 + B1_Mus1 SINE Alu 1 148 0 6 1018 315 96 0 0 chr9 56845785 56845837 -67230335 + (A)n Simple_repeat Simple_repeat 1 52 0 6 1018 657 217 58 0 chr9 56845849 56845987 -67230185 + B1_Mus2 SINE Alu 2 147 0 6 1018 425 19 19 0 chr9 56845987 56846041 -67230131 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 6 1018 624 245 14 0 chr9 56846264 56846275 -67229897 - B1_Mur1 SINE Alu 0 149 139 6 1018 237 65 0 0 chr9 56846275 56846306 -67229866 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 6 1018 624 245 14 0 chr9 56846306 56846441 -67229731 - B1_Mur1 SINE Alu -11 138 2 6 1018 210 238 0 0 chr9 56846451 56846493 -67229679 - PB1D10 SINE Alu -74 43 2 6 1018 318 148 0 0 chr9 56846501 56846555 -67229617 + (TCC)n Simple_repeat Simple_repeat 1 54 0 6 1018 559 156 164 0 chr9 56846555 56846567 -67229605 - B1_Mur3 SINE Alu 0 149 138 6 1018 324 0 0 0 chr9 56846567 56846603 -67229569 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1018 559 156 164 0 chr9 56846603 56846718 -67229454 - B1_Mur3 SINE Alu -12 137 2 6 1018 374 198 11 23 chr9 56846749 56846837 -67229335 + PB1D9 SINE Alu 34 120 0 6 1018 180 111 0 0 chr9 56846844 56846871 -67229301 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1018 180 0 0 0 chr9 56847179 56847199 -67228973 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 6 1018 1162 81 0 0 chr9 56847199 56847347 -67228825 - B1_Mus1 SINE Alu 0 148 1 6 1018 21 0 0 0 chr9 56847519 56847540 -67228632 + AT_rich Low_complexity Low_complexity 1 21 0 6 1018 570 252 0 16 chr9 56847564 56847693 -67228479 - RSINE1 SINE B4 -21 144 18 6 1018 468 225 36 30 chr9 56847825 56848024 -67228148 + RMER4B LTR ERVK 343 576 -9 6 1018 496 232 30 0 chr9 56848045 56848144 -67228028 + PB1D7 SINE Alu 8 109 -11 6 1018 770 244 24 19 chr9 56848157 56848362 -67227810 + B4 SINE B4 1 206 -86 6 1018 1161 69 7 0 chr9 56848541 56848686 -67227486 - B1_Mm SINE Alu 0 147 2 6 1018 226 333 0 0 chr9 56848819 56848882 -67227290 - tRNA-Ala-GCY_ tRNA tRNA -8 67 5 7 1018 29 47 0 0 chr9 56848895 56848938 -67227234 + AT_rich Low_complexity Low_complexity 1 43 0 7 1018 444 286 45 8 chr9 56848938 56849072 -67227100 - B1F2 SINE Alu -10 139 1 7 1018 24 0 0 0 chr9 56849371 56849395 -67226777 + AT_rich Low_complexity Low_complexity 1 24 0 7 1018 298 200 31 0 chr9 56849396 56849461 -67226711 - B1_Mur1 SINE Alu -1 148 82 7 1018 198 91 0 0 chr9 56849490 56849523 -67226649 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1018 517 209 181 47 chr9 56849525 56849696 -67226476 - B3A SINE B2 0 198 5 7 1018 1145 134 26 21 chr9 56849817 56849849 -67226323 - B2_Mm2 SINE B2 -4 191 159 7 1018 306 0 0 0 chr9 56849849 56849883 -67226289 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 7 1018 1145 134 26 21 chr9 56849883 56850040 -67226132 - B2_Mm2 SINE B2 -37 158 2 7 1018 1198 34 0 20 chr9 56850053 56850202 -67225970 - B1_Mus2 SINE Alu -1 146 1 7 1018 192 40 0 0 chr9 56850231 56850256 -67225916 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 7 1018 2384 171 30 15 chr9 56850256 56850718 -67225454 - RLTR17 LTR ERVK -16 676 208 7 1018 958 142 0 20 chr9 56850810 56850961 -67225211 - B1_Mur4 SINE Alu -2 148 1 7 1018 240 160 100 0 chr9 56851777 56851827 -67224345 + B1F SINE Alu 95 149 0 7 1018 1222 99 66 6 chr9 56852117 56852299 -67223873 + B2_Mm2 SINE B2 3 195 0 7 1018 230 239 76 43 chr9 56852374 56852466 -67223706 - PB1D10 SINE Alu -18 99 5 7 1018 641 167 12 183 chr9 56852597 56852766 -67223406 - B1_Mur3 SINE Alu -9 140 1 7 1018 972 159 26 5 chr9 56852920 56853109 -67223063 - B3 SINE B2 0 216 24 7 1018 471 250 22 52 chr9 56853280 56853415 -67222757 + ID_B1 SINE B4 91 221 -3 7 1018 329 65 0 0 chr9 56853431 56853477 -67222695 - B3 SINE B2 -170 46 1 7 1018 519 227 101 32 chr9 56853497 56853683 -67222489 - B3A SINE B2 -8 208 8 7 1018 1080 179 202 85 chr9 56854045 56854112 -67222060 - ORR1C2 LTR MaLR 0 384 345 7 1018 1127 82 7 0 chr9 56854112 56854259 -67221913 - B1_Mus1 SINE Alu 0 148 1 7 1018 1080 179 202 85 chr9 56854259 56854533 -67221639 - ORR1C2 LTR MaLR -40 344 4 7 1018 811 188 7 26 chr9 56854584 56854737 -67221435 - B1_Mur4 SINE Alu 0 150 1 7 1018 1224 106 72 0 chr9 56854787 56854967 -67221205 + B2_Mm2 SINE B2 2 194 -1 7 1018 1170 103 0 6 chr9 56855149 56855324 -67220848 - B2_Mm2 SINE B2 -21 174 1 7 1018 724 217 0 38 chr9 56855432 56855590 -67220582 + B3A SINE B2 3 154 -44 7 1018 336 127 0 0 chr9 56855590 56855645 -67220527 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1018 900 163 0 26 chr9 56855864 56856015 -67220157 + B1_Mur4 SINE Alu 2 148 -2 7 1018 231 36 0 0 chr9 56856110 56856138 -67220034 + (CTCA)n Simple_repeat Simple_repeat 1 28 0 7 1018 378 0 0 0 chr9 56856332 56856374 -67219798 + (TTA)n Simple_repeat Simple_repeat 2 43 0 7 1018 222 245 0 0 chr9 56856425 56856478 -67219694 - ID4_ SINE ID -29 54 2 7 1018 304 312 97 35 chr9 56856510 56856623 -67219549 - PB1 SINE Alu -4 123 4 7 1018 348 315 28 0 chr9 56856834 56856942 -67219230 - ID_B1 SINE B4 -22 202 92 7 1018 393 294 94 62 chr9 56857003 56857059 -67219113 - B4A SINE B4 -13 279 223 7 1018 1329 67 55 11 chr9 56857059 56857240 -67218932 - B2_Mm2 SINE B2 -6 189 1 7 1018 393 294 94 62 chr9 56857240 56857375 -67218797 - B4A SINE B4 -70 222 82 7 1018 720 165 118 0 chr9 56857404 56857531 -67218641 - B1_Mur4 SINE Alu -6 144 3 7 1018 289 308 22 0 chr9 56857536 56857627 -67218545 - B4A SINE B4 -199 93 1 7 1018 1423 68 6 0 chr9 56858384 56858561 -67217611 - B2_Mm1t SINE B2 -14 179 2 7 1018 611 216 14 150 chr9 56859030 56859237 -67216935 - RLTR42-int LTR ERVK -3654 1868 1690 7 1018 636 159 62 0 chr9 56859788 56859901 -67216271 - B1_Mm SINE Alu -16 131 12 7 1018 304 288 45 53 chr9 56859901 56859920 -67216252 - ID_B1 SINE B4 -16 208 78 7 1018 467 184 16 102 chr9 56859946 56860073 -67216099 + MT2B LTR ERVL 149 264 -337 7 1018 965 59 15 0 chr9 56859971 56860106 -67216066 + B1_Mus1 SINE Alu 12 148 0 7 1018 230 314 29 0 chr9 56860612 56860682 -67215490 - ID4_ SINE ID -9 74 3 7 1018 938 92 0 0 chr9 56860944 56861075 -67215097 - B1_Mus1 SINE Alu 0 148 18 7 1018 918 126 0 20 chr9 56861177 56861323 -67214849 - B1_Mus1 SINE Alu 0 148 6 7 1018 304 218 0 6 chr9 56861361 56861432 -67214740 + B3 SINE B2 2 69 -129 7 1018 411 193 0 0 chr9 56861953 56862036 -67214136 + (TG)n Simple_repeat Simple_repeat 2 84 0 7 1018 3691 24 0 0 chr9 56862088 56862508 -67213664 + L1Md_T LINE L1 6160 6579 -3 7 1018 881 247 131 0 chr9 56862890 56863181 -67212991 + L1MA7 LINE L1 5894 6222 -69 7 1018 1307 94 67 0 chr9 56863226 56863406 -67212766 + B2_Mm2 SINE B2 2 193 -2 7 1018 622 220 42 7 chr9 56863534 56863676 -67212496 + B1_Mur1 SINE Alu 3 149 0 7 1018 403 339 0 0 chr9 56863734 56863849 -67212323 - B1F2 SINE Alu -34 115 1 7 1018 243 383 34 41 chr9 56863849 56863880 -67212292 - B4 SINE B4 -87 204 60 7 1018 932 147 133 30 chr9 56863897 56864100 -67212072 + URR1A DNA MER1_type 3 226 0 7 1018 296 227 29 58 chr9 56864140 56864243 -67211929 + RMER15 LTR ERVL 19 118 -457 7 1018 563 299 150 16 chr9 56864262 56864568 -67211604 + RMER15 LTR ERVL 211 557 -18 7 1018 1163 51 13 0 chr9 56864794 56864951 -67211221 + B2_Mm2 SINE B2 1 159 -36 7 1018 324 0 0 0 chr9 56864951 56864987 -67211185 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 7 1018 665 217 36 0 chr9 56865011 56865149 -67211023 + B1F2 SINE Alu 1 143 -6 7 1018 323 278 73 73 chr9 56865922 56866046 -67210126 - B1F2 SINE Alu -9 140 17 7 1018 308 277 118 10 chr9 56866078 56866180 -67209992 - B1_Mur2 SINE Alu -10 139 27 7 1018 216 67 0 0 chr9 56866296 56866326 -67209846 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 7 1018 1230 41 0 0 chr9 56866328 56866475 -67209697 - B1_Mus1 SINE Alu 0 148 2 7 1018 562 172 8 41 chr9 56866556 56866677 -67209495 - B1_Mur2 SINE Alu 0 149 33 7 1018 2024 130 65 0 chr9 56867049 56867356 -67208816 + ORR1A2 LTR MaLR 1 327 0 7 1018 34 24 0 0 chr9 56867359 56867400 -67208772 + AT_rich Low_complexity Low_complexity 1 41 0 7 1018 324 0 0 0 chr9 56868284 56868320 -67207852 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 7 1018 328 193 0 0 chr9 56868340 56868397 -67207775 - B1_Mur4 SINE Alu -93 57 1 7 1018 24 0 0 0 chr9 56868399 56868423 -67207749 + AT_rich Low_complexity Low_complexity 1 24 0 7 1018 1222 75 87 0 chr9 56868423 56868596 -67207576 - B2_Mm2 SINE B2 -6 189 2 7 1018 533 172 214 32 chr9 56868599 56868725 -67207447 - B1_Mur3 SINE Alu 0 149 1 7 1018 197 371 124 25 chr9 56869397 56869842 -67206330 - L2 LINE L2 -665 2754 2266 7 1018 549 167 83 9 chr9 56871395 56871504 -67204668 + PB1D9 SINE Alu 2 118 -2 7 1018 956 81 81 0 chr9 56871533 56871669 -67204503 + B1_Mm SINE Alu 1 147 0 7 1018 1126 214 5 0 chr9 56871727 56871926 -67204246 + B3 SINE B2 1 200 -16 7 1018 270 0 0 0 chr9 56871926 56871956 -67204216 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 7 1018 1126 214 5 0 chr9 56871956 56871971 -67204201 + B3 SINE B2 201 215 -1 7 1018 538 301 45 76 chr9 56871989 56872072 -67204100 + ID SINE ID 5 80 -144 7 1018 589 264 35 7 chr9 56872072 56872217 -67203955 + B1F2 SINE Alu 1 149 0 7 1018 710 143 8 0 chr9 56872307 56872440 -67203732 + (TAGA)n Simple_repeat Simple_repeat 2 135 0 7 1018 679 243 0 0 chr9 56872443 56872583 -67203589 + B1_Mur1 SINE Alu 2 141 -8 7 1018 916 221 39 10 chr9 56872604 56872810 -67203362 + B3 SINE B2 5 216 0 7 1018 286 315 67 0 chr9 56872826 56872915 -67203257 + PB1D7 SINE Alu 24 118 -2 7 1018 603 0 0 0 chr9 56873067 56873134 -67203038 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 7 1018 746 204 7 7 chr9 56873134 56873273 -67202899 - B1_Mus1 SINE Alu -8 140 2 7 1018 246 32 0 0 chr9 56874140 56874171 -67202001 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1018 1113 72 0 0 chr9 56874173 56874312 -67201860 - B1_Mus1 SINE Alu -8 140 2 7 1018 327 230 0 94 chr9 56874704 56874800 -67201372 + B1F SINE Alu 12 98 -51 7 1018 461 321 12 70 chr9 56874895 56875066 -67201106 + RSINE1 SINE B4 4 164 -1 7 1018 752 52 276 0 chr9 56875486 56875602 -67200570 + B1_Mus1 SINE Alu 1 148 0 7 1018 446 318 8 0 chr9 56875645 56875771 -67200401 + B1F SINE Alu 5 131 -18 7 1018 966 108 148 18 chr9 56875893 56876047 -67200125 + B2_Mm2 SINE B2 1 177 -18 7 1018 315 0 0 0 chr9 56876047 56876082 -67200090 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 7 1018 966 108 148 18 chr9 56876082 56876096 -67200076 + B2_Mm2 SINE B2 178 191 -4 7 1018 1144 256 29 15 chr9 56876427 56876701 -67199471 - B4 SINE B4 -12 280 3 7 1018 395 253 256 6 chr9 56876745 56876901 -67199271 + ID_B1 SINE B4 3 197 -27 7 1018 1230 221 127 6 chr9 56876896 56877219 -67198953 - ORR1D1 LTR MaLR -7 367 6 7 1018 708 140 49 42 chr9 56877295 56877437 -67198735 - B2_Mm2 SINE B2 -14 181 39 7 1018 2611 73 55 0 chr9 56877442 56877826 -67198346 - RLTR10A LTR ERVK 0 411 7 7 1018 221 118 0 0 chr9 56877834 56877868 -67198304 - B2_Mm2 SINE B2 -161 34 1 7 1018 297 0 0 0 chr9 56877875 56877908 -67198264 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 7 1018 949 100 50 7 chr9 56877922 56878063 -67198109 - B1_Mus1 SINE Alu -1 147 1 7 1018 225 204 0 39 chr9 56878165 56878216 -67197956 + PB1D10 SINE Alu 63 111 -6 7 1018 564 174 0 35 chr9 56878500 56878613 -67197559 + B1_Mur1 SINE Alu 41 149 0 7 1018 1187 55 0 0 chr9 56878618 56878764 -67197408 + B1_Mus1 SINE Alu 3 148 0 8 1018 298 190 375 0 chr9 56878849 56878945 -67197227 + B3A SINE B2 1 132 -66 8 1018 198 103 0 0 chr9 56878957 56878986 -67197186 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 8 1018 221 261 28 28 chr9 56879070 56879141 -67197031 - B1_Mur1 SINE Alu 0 149 79 8 1018 518 280 125 79 chr9 56879516 56879795 -67196377 - B4 SINE B4 0 292 1 8 1018 180 152 0 0 chr9 56880014 56880047 -67196125 + (CATG)n Simple_repeat Simple_repeat 2 34 0 8 1018 1154 80 68 0 chr9 56880272 56880434 -67195738 + B2_Mm1t SINE B2 2 174 -19 8 1018 210 316 107 78 chr9 56880517 56880620 -67195552 + RSINE1 SINE B4 1 106 -59 8 1018 287 270 0 0 chr9 56881376 56881439 -67194733 + ID4_ SINE ID 12 74 -9 8 1018 242 256 11 58 chr9 56881512 56881599 -67194573 + ID SINE ID 1 83 -141 8 1018 280 261 0 54 chr9 56881599 56881644 -67194528 + ID4_ SINE ID 1 120 -32 8 1018 269 256 67 113 chr9 56881718 56881868 -67194304 - B1F SINE Alu 0 149 7 8 1018 547 259 7 36 chr9 56882045 56882185 -67193987 + ID_B1 SINE B4 88 223 -1 8 1018 702 158 0 82 chr9 56882238 56882397 -67193775 - B1_Mm SINE Alu -1 146 1 8 1018 1223 47 0 0 chr9 56882984 56883132 -67193040 + B1_Mus1 SINE Alu 1 148 0 8 1018 203 171 0 0 chr9 56883135 56883176 -67192996 + A-rich Low_complexity Low_complexity 1 41 0 8 1018 504 221 142 0 chr9 56883195 56883308 -67192864 - B3 SINE B2 -36 180 52 8 1018 211 278 222 0 chr9 56883402 56883492 -67192680 + B3A SINE B2 4 113 -85 8 1018 324 0 0 0 chr9 56883525 56883561 -67192611 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1018 633 14 0 0 chr9 56883561 56883634 -67192538 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1018 390 200 10 135 chr9 56884745 56884849 -67191323 + PB1D9 SINE Alu 2 92 -28 8 1018 436 301 21 14 chr9 56884885 56885030 -67191142 + B4A SINE B4 20 165 -127 8 127 1428 59 21 11 chr9 56885166 56885353 -67190819 - B2_Mm1a SINE B2 -3 190 2 8 1019 1155 56 14 0 chr9 56885442 56885586 -67190586 - B1_Mus1 SINE Alu -1 147 2 8 1019 219 69 0 0 chr9 56885681 56885710 -67190462 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1019 541 185 103 16 chr9 56885713 56885839 -67190333 - B1F2 SINE Alu 0 149 13 8 1019 1661 31 5 0 chr9 56885893 56886085 -67190087 + B2_Mm1t SINE B2 1 193 0 8 1019 246 174 0 0 chr9 56886415 56886461 -67189711 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 8 1019 497 242 75 15 chr9 56886484 56886618 -67189554 - B1_Mur1 SINE Alu -1 148 7 8 1019 898 189 97 0 chr9 56886658 56886854 -67189318 - B3 SINE B2 0 216 2 8 1019 584 236 26 53 chr9 56887229 56887381 -67188791 + RSINE1 SINE B4 4 151 -14 8 1019 1058 62 7 0 chr9 56887445 56887591 -67188581 + B2_Mm2 SINE B2 1 147 -48 8 1019 186 43 0 0 chr9 56887607 56887630 -67188542 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 8 1019 848 173 0 39 chr9 56887762 56887918 -67188254 + B1_Mur4 SINE Alu 1 150 0 8 1019 265 296 78 0 chr9 56888024 56888132 -67188040 - B1F1 SINE Alu -34 115 1 8 1019 589 277 0 13 chr9 56888179 56888329 -67187843 - ID_B1 SINE B4 -15 209 66 8 1019 26 0 0 0 chr9 56888679 56888705 -67187467 + AT_rich Low_complexity Low_complexity 1 26 0 8 1019 758 150 22 22 chr9 56888726 56888862 -67187310 + B1_Mur4 SINE Alu 7 142 -8 8 1019 203 189 19 0 chr9 56888902 56888955 -67187217 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 8 1019 868 270 121 12 chr9 56889039 56889362 -67186810 + ORR1D2 LTR MaLR 1 358 -12 8 1019 390 188 0 0 chr9 56889371 56889435 -67186737 - B1_Mus2 SINE Alu -83 64 1 8 1019 426 20 0 0 chr9 56889505 56889556 -67186616 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1019 28 51 0 17 chr9 56889564 56889593 -67186579 + AT_rich Low_complexity Low_complexity 1 29 0 8 1019 2361 104 3 15 chr9 56889593 56889924 -67186248 - ORR1A2 LTR MaLR 0 327 1 8 1019 28 51 0 17 chr9 56889924 56889954 -67186218 + AT_rich Low_complexity Low_complexity 1 30 0 8 1019 756 252 43 19 chr9 56889959 56890169 -67186003 - B3 SINE B2 0 216 2 8 1019 842 81 8 0 chr9 56890215 56890339 -67185833 + (TC)n Simple_repeat Simple_repeat 1 125 0 8 1019 953 128 6 45 chr9 56890343 56890499 -67185673 - B1_Mur4 SINE Alu 0 150 1 8 1019 912 136 7 0 chr9 56890648 56890788 -67185384 + B1_Mus1 SINE Alu 2 142 -6 8 1019 1430 78 16 5 chr9 56890987 56891180 -67184992 + B2_Mm2 SINE B2 1 195 0 8 1019 337 306 102 0 chr9 56891281 56891389 -67184783 + RSINE1 SINE B4 16 134 -31 8 1019 22 35 0 0 chr9 56891414 56891443 -67184729 + AT_rich Low_complexity Low_complexity 1 29 0 8 1019 637 247 126 5 chr9 56891731 56891922 -67184250 - ID_B1 SINE B4 -9 215 2 8 1019 315 269 0 157 chr9 56892477 56892565 -67183607 - B1_Mur4 SINE Alu 0 150 75 8 1019 1176 55 0 7 chr9 56892565 56892712 -67183460 - B1_Mus2 SINE Alu 0 147 2 8 1019 315 269 0 157 chr9 56892712 56892782 -67183390 - B1_Mur4 SINE Alu -76 74 17 8 1019 453 113 0 0 chr9 56892784 56892855 -67183317 + B1_Mur4 SINE Alu 80 150 0 8 1019 385 315 30 15 chr9 56892889 56893021 -67183151 - RSINE1 SINE B4 -7 158 25 8 1019 414 303 14 21 chr9 56893086 56893231 -67182941 + RSINE1 SINE B4 3 146 -19 8 1019 1060 103 0 27 chr9 56893729 56893879 -67182293 - B1_Mus2 SINE Alu 0 147 2 8 1019 1279 34 0 0 chr9 56893908 56894055 -67182117 + B1_Mm SINE Alu 1 147 0 8 1019 798 254 14 64 chr9 56894485 56894704 -67181468 - ID_B1 SINE B4 -14 210 3 8 1019 682 221 112 7 chr9 56894756 56894958 -67181214 - MTD LTR MaLR -15 404 196 8 1019 222 231 0 0 chr9 56894962 56895027 -67181145 + T-rich Low_complexity Low_complexity 1 65 0 8 1019 1196 61 0 0 chr9 56895028 56895175 -67180997 - B1_Mus1 SINE Alu -1 147 1 8 1019 713 12 12 0 chr9 56895264 56895350 -67180822 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 8 1019 1020 45 91 0 chr9 56895350 56895482 -67180690 - B1_Mm SINE Alu -3 144 1 8 1019 470 232 79 18 chr9 56895491 56895605 -67180567 - B1F2 SINE Alu -7 142 22 8 1019 645 49 0 0 chr9 56895642 56895723 -67180449 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 8 1019 1040 208 51 0 chr9 56896146 56896343 -67179829 - B3 SINE B2 -9 207 1 8 1019 411 21 0 0 chr9 56896447 56896495 -67179677 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1019 613 151 0 19 chr9 56896495 56896603 -67179569 - B1_Mus2 SINE Alu -22 125 20 8 1019 1115 84 0 0 chr9 56896648 56896791 -67179381 - B1_Mus1 SINE Alu -5 143 1 8 1019 289 276 141 13 chr9 56897178 56897314 -67178858 + B1F SINE Alu 2 149 0 8 1019 443 274 17 8 chr9 56897598 56897716 -67178456 - ID_B1 SINE B4 -18 206 88 8 1019 1122 83 0 0 chr9 56897846 56897990 -67178182 - B1_Mus1 SINE Alu -4 144 1 8 1019 189 0 0 0 chr9 56898014 56898035 -67178137 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1019 283 247 0 110 chr9 56898049 56898061 -67178111 + MT2B LTR ERVL 156 236 -365 8 1019 538 89 0 0 chr9 56898061 56898140 -67178032 + B1_Mus2 SINE Alu 1 79 -68 8 1019 236 208 141 13 chr9 56898141 56898219 -67177953 - MIRb SINE MIR -132 136 49 8 1019 260 259 0 0 chr9 56898329 56898383 -67177789 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1019 772 230 120 34 chr9 56898383 56898649 -67177523 - B4A SINE B4 0 292 4 8 1019 442 305 0 8 chr9 56898839 56898958 -67177214 - PB1D7 SINE Alu -2 118 1 8 1019 557 237 0 25 chr9 56898987 56899108 -67177064 - ID_B1 SINE B4 -8 216 99 8 1019 965 222 19 19 chr9 56899286 56899497 -67176675 - B3 SINE B2 -5 211 1 8 1019 790 166 7 0 chr9 56899612 56899751 -67176421 - B1_Mus1 SINE Alu 0 148 9 8 1019 275 279 0 0 chr9 56900023 56900091 -67176081 + PB1D10 SINE Alu 44 111 -6 8 1019 367 206 0 0 chr9 56900277 56900340 -67175832 - tRNA-Ala-GCY_ tRNA tRNA -12 63 1 8 1019 350 206 0 93 chr9 56900340 56900352 -67175820 - ID4_ SINE ID -14 69 2 8 1019 960 227 50 0 chr9 56900379 56900577 -67175595 - B3 SINE B2 -1 215 8 8 1019 346 248 27 54 chr9 56900835 56900946 -67175226 + B4 SINE B4 116 223 -69 8 1019 1258 80 0 138 chr9 56901234 56901410 -67174762 - B2_Mm2 SINE B2 -7 188 39 8 1019 1224 48 0 0 chr9 56901410 56901557 -67174615 - B1_Mus2 SINE Alu 0 147 1 8 1019 1258 80 0 138 chr9 56901557 56901598 -67174574 - B2_Mm2 SINE B2 -157 38 1 8 1019 410 285 102 28 chr9 56901822 56901999 -67174173 + B3A SINE B2 2 191 -7 8 1019 770 67 0 0 chr9 56902004 56902108 -67174064 + B1_Mus2 SINE Alu 1 104 -43 8 1019 768 104 0 23 chr9 56902100 56902228 -67173944 + B2_Mm2 SINE B2 66 190 -5 8 1019 446 245 9 9 chr9 56902238 56902349 -67173823 + B1_Mus1 SINE Alu 38 148 0 8 1019 394 202 24 0 chr9 56902705 56902789 -67173383 - PB1D9 SINE Alu 0 120 35 8 1019 386 250 10 10 chr9 56902879 56902980 -67173192 - B1_Mus1 SINE Alu -10 138 38 8 1019 1251 84 67 6 chr9 56902990 56903169 -67173003 - B2_Mm2 SINE B2 -5 190 1 8 1019 1186 21 20 20 chr9 56903835 56903982 -67172190 - B1_Mus1 SINE Alu -1 147 1 8 1019 1336 82 18 0 chr9 56903982 56904153 -67172019 - B2_Mm2 SINE B2 -19 176 3 9 1019 378 257 148 0 chr9 56904153 56904254 -67171918 - B3 SINE B2 -5 211 96 9 1019 300 191 271 21 chr9 56904332 56904428 -67171744 + B1F SINE Alu 19 138 -11 9 1019 405 274 62 0 chr9 56905733 56905846 -67170326 + B1_Mur4 SINE Alu 9 128 -22 9 1019 446 270 30 0 chr9 56905908 56906008 -67170164 + B1_Mur2 SINE Alu 1 103 -46 9 1019 1290 89 6 11 chr9 56906113 56906295 -67169877 + B2_Mm2 SINE B2 1 181 -14 9 1019 238 286 42 14 chr9 56906386 56906457 -67169715 + PB1D10 SINE Alu 41 113 -4 9 1019 523 319 57 34 chr9 56906465 56906728 -67169444 + B4A SINE B4 1 269 -23 9 1019 480 248 0 82 chr9 56906800 56906958 -67169214 - B1_Mur1 SINE Alu -3 146 2 9 1019 812 47 0 0 chr9 56907008 56907114 -67169058 - B1_Mus1 SINE Alu -6 142 37 9 1019 297 154 70 93 chr9 56907045 56907131 -67169041 - RLTR25B LTR ERVK -519 509 426 9 1019 701 248 88 23 chr9 56907133 56907393 -67168779 - Lx9 LINE L1 -16 7628 7352 9 1019 183 87 42 42 chr9 56907415 56907463 -67168709 + (TAA)n Simple_repeat Simple_repeat 1 48 0 9 1019 365 336 0 0 chr9 56908215 56908331 -67167841 - PB1D10 SINE Alu -1 116 1 9 1019 250 288 0 0 chr9 56909462 56909521 -67166651 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1019 228 259 0 108 chr9 56910859 56910924 -67165248 - B1F2 SINE Alu -90 59 2 9 1019 219 36 0 0 chr9 56911149 56911177 -67164995 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1019 362 226 11 45 chr9 56911202 56911290 -67164882 - PB1D10 SINE Alu -1 116 32 9 1019 519 208 8 8 chr9 56911844 56911965 -67164207 + ID_B1 SINE B4 104 224 0 9 1019 717 190 26 66 chr9 56912443 56912595 -67163577 - B1_Mur4 SINE Alu -4 146 1 9 1019 423 56 0 0 chr9 56912608 56912662 -67163510 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 9 1019 272 47 0 0 chr9 56912662 56912705 -67163467 - B1_Mur4 SINE Alu 0 150 108 9 1019 22 0 0 0 chr9 56912707 56912729 -67163443 + AT_rich Low_complexity Low_complexity 1 22 0 9 1019 424 284 106 61 chr9 56912742 56913036 -67163136 - B4 SINE B4 -18 274 4 9 1019 28 0 0 0 chr9 56913036 56913064 -67163108 + AT_rich Low_complexity Low_complexity 1 28 0 9 1019 323 290 0 0 chr9 56913068 56913137 -67163035 - B1F1 SINE Alu -77 72 4 9 1019 257 363 69 26 chr9 56913137 56913253 -67162919 - PB1 SINE Alu -4 123 3 9 1019 516 207 36 0 chr9 56913309 56913420 -67162752 - PB1D10 SINE Alu -2 115 1 9 1019 378 0 0 0 chr9 56913580 56913622 -67162550 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1019 264 59 0 0 chr9 56914047 56914081 -67162091 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1019 1169 68 0 0 chr9 56914081 56914228 -67161944 - B1_Mus1 SINE Alu 0 148 2 9 1019 556 241 113 0 chr9 56914456 56914589 -67161583 + B1_Mur2 SINE Alu 1 148 -1 9 1019 1190 62 7 0 chr9 56915537 56915683 -67160489 + B1_Mm SINE Alu 1 147 0 9 1019 201 176 0 0 chr9 56915683 56915717 -67160455 + A-rich Low_complexity Low_complexity 1 34 0 9 1019 295 133 152 51 chr9 56916010 56916089 -67160083 + ID_B1 SINE B4 130 216 -8 9 1019 348 83 0 0 chr9 56916395 56916443 -67159729 + (CAGAC)n Simple_repeat Simple_repeat 5 52 0 9 1019 269 303 80 10 chr9 56916447 56916547 -67159625 + B4A SINE B4 34 140 -152 9 1019 684 279 66 66 chr9 56917212 56917469 -67158703 + B4A SINE B4 1 257 -35 9 1019 356 279 12 0 chr9 56918319 56918405 -67157767 - PB1D10 SINE Alu -12 105 19 9 1019 769 243 98 5 chr9 56918561 56918764 -67157408 + ID_B1 SINE B4 1 222 -2 9 1019 405 0 0 0 chr9 56919111 56919156 -67157016 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1019 317 187 147 0 chr9 56919422 56919497 -67156675 - 5S rRNA rRNA -35 86 1 9 1019 21 0 0 0 chr9 56919704 56919725 -67156447 + AT_rich Low_complexity Low_complexity 1 21 0 9 1019 30 0 0 0 chr9 56920242 56920272 -67155900 + AT_rich Low_complexity Low_complexity 1 30 0 9 1019 189 0 0 0 chr9 56922565 56922586 -67153586 + (TTA)n Simple_repeat Simple_repeat 1 21 0 9 1019 1269 98 6 0 chr9 56922586 56922759 -67153413 - B2_Mm1a SINE B2 -18 175 2 9 1019 195 42 0 0 chr9 56924257 56924281 -67151891 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 9 1019 252 250 132 107 chr9 56926004 56926125 -67150047 - B2_Mm2 SINE B2 -71 124 1 9 1019 672 216 57 7 chr9 56926441 56926581 -67149591 - B1_Mus1 SINE Alu 0 148 2 9 1019 1174 49 0 0 chr9 56927211 56927353 -67148819 + B1_Mus2 SINE Alu 1 142 -5 9 1019 241 209 119 0 chr9 56927582 56927649 -67148523 - PB1D7 SINE Alu -22 98 24 9 1019 395 271 29 52 chr9 56927685 56927821 -67148351 + RSINE1 SINE B4 4 136 -29 9 1019 239 271 14 14 chr9 56928134 56928205 -67147967 + RSINE1 SINE B4 2 72 -93 9 1019 413 216 26 26 chr9 56928272 56928386 -67147786 + ID_B1 SINE B4 104 217 -7 9 1019 283 290 176 23 chr9 56928537 56928708 -67147464 + ID_B1 SINE B4 28 224 0 9 1019 220 312 89 25 chr9 56928713 56928792 -67147380 + RSINE1 SINE B4 3 86 -79 9 1019 580 230 17 80 chr9 56928843 56929018 -67147154 - L1MB3 LINE L1 -15 6168 6005 9 1019 255 195 16 22 chr9 56929126 56929211 -67146961 - B1_Mus2 SINE Alu -28 120 40 9 1019 234 238 246 78 chr9 56929211 56929319 -67146853 - L1MB3 LINE L1 -327 5856 5720 9 1019 802 259 91 0 chr9 56929319 56929516 -67146656 - B3 SINE B2 0 216 2 9 1019 234 238 246 78 chr9 56929516 56929639 -67146533 - L1MB3 LINE L1 -464 5719 5586 9 1019 787 231 64 0 chr9 56929696 56929869 -67146303 + B3 SINE B2 6 189 -27 9 1019 657 172 96 15 chr9 56929887 56930023 -67146149 - B1_Mus2 SINE Alu 0 147 1 9 1019 712 270 22 6 chr9 56930488 56930667 -67145505 - B3A SINE B2 -16 182 1 9 1019 472 196 97 10 chr9 56931054 56931157 -67145015 - PB1D9 SINE Alu 0 120 9 9 1019 481 314 63 54 chr9 56931199 56931404 -67144768 + B4A SINE B4 10 216 -76 9 1019 534 190 8 49 chr9 56931467 56931589 -67144583 - B3 SINE B2 -99 117 1 9 1019 261 0 0 0 chr9 56931649 56931678 -67144494 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 9 1019 284 182 0 35 chr9 56931704 56931761 -67144411 - B2_Mm2 SINE B2 -94 101 47 9 1019 840 127 14 40 chr9 56931775 56931923 -67144249 - B2_Mm1t SINE B2 -48 145 2 9 1019 331 62 21 0 chr9 56932145 56932193 -67143979 - B1_Mus1 SINE Alu -99 49 1 9 1019 624 134 169 23 chr9 56932243 56932373 -67143799 + B1_Mur4 SINE Alu 2 150 0 9 1019 1050 107 154 0 chr9 56932630 56932799 -67143373 + B2_Mm2 SINE B2 1 195 0 9 1019 1078 73 0 0 chr9 56932799 56932936 -67143236 + B1_Mus1 SINE Alu 1 137 -11 9 1019 249 57 0 0 chr9 56932938 56932973 -67143199 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1019 338 309 43 42 chr9 56933054 56933257 -67142915 - B3A SINE B2 -2 214 1 9 1019 568 282 28 0 chr9 56933299 56933441 -67142731 - RSINE1 SINE B4 -11 154 9 9 1019 874 212 121 107 chr9 56933736 56934101 -67142071 - ORR1D1 LTR MaLR -4 370 1 9 1019 273 274 54 45 chr9 56934869 56934980 -67141192 - PB1D10 SINE Alu 0 117 6 9 1019 300 373 38 0 chr9 56934895 56935053 -67141119 - ID_B1 SINE B4 -49 175 12 9 1019 804 167 42 0 chr9 56935175 56935319 -67140853 - B1_Mur4 SINE Alu 0 150 1 9 1019 24 0 0 0 chr9 56935319 56935343 -67140829 + AT_rich Low_complexity Low_complexity 1 24 0 9 1019 357 186 150 30 chr9 56935389 56935489 -67140683 - PB1D9 SINE Alu -8 112 1 9 1019 228 273 18 0 chr9 56935507 56935562 -67140610 - ID4_ SINE ID 0 83 28 9 1019 201 147 0 0 chr9 56935931 56935965 -67140207 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 9 1019 817 86 133 0 chr9 56935967 56936095 -67140077 - B1_Mur3 SINE Alu 0 149 5 9 1019 625 306 36 36 chr9 56936189 56936413 -67139759 - ID_B1 SINE B4 0 224 1 9 1019 311 291 56 14 chr9 56936658 56936801 -67139371 - B1F SINE Alu 0 149 1 9 1019 541 225 18 0 chr9 56936877 56936988 -67139184 - B1_Mm SINE Alu -30 117 5 9 1019 551 308 86 86 chr9 56938180 56938681 -67137491 + MER44B DNA MER2_type 26 526 -24 9 1019 343 219 50 42 chr9 56939056 56939068 -67137104 - PB1D7 SINE Alu 0 120 109 9 1019 1225 54 0 0 chr9 56939068 56939215 -67136957 - B1_Mus2 SINE Alu 0 147 1 9 1019 343 219 50 42 chr9 56939215 56939321 -67136851 - PB1D7 SINE Alu -12 108 1 9 1019 33 25 0 0 chr9 56939685 56939725 -67136447 + AT_rich Low_complexity Low_complexity 1 40 0 9 1019 436 282 86 80 chr9 56939737 56939899 -67136273 - RSINE1 SINE B4 0 165 3 9 1019 251 288 27 0 chr9 56939984 56940057 -67136115 - ID4_ SINE ID -7 76 2 9 1019 1028 191 189 13 chr9 56940106 56940424 -67135748 - ORR1C2 LTR MaLR -3 381 8 9 1019 603 252 14 0 chr9 56940472 56940619 -67135553 + B1_Mur1 SINE Alu 1 149 0 9 1019 477 286 76 25 chr9 56940798 56940956 -67135216 + B4 SINE B4 55 220 -72 9 1019 222 281 23 58 chr9 56941035 56941122 -67135050 + ID SINE ID 2 85 -139 9 1019 223 170 0 0 chr9 56942709 56942756 -67133416 + T-rich Low_complexity Low_complexity 2 48 0 9 1019 203 294 32 11 chr9 56943279 56943372 -67132800 + (CCCCAG)n Simple_repeat Simple_repeat 3 97 0 9 1019 237 310 99 10 chr9 56943826 56943927 -67132245 + PB1D10 SINE Alu 1 110 -7 9 1019 257 270 13 63 chr9 56944022 56944101 -67132071 - Charlie5 DNA MER1_type -2529 95 21 1 1019 1106 54 0 45 chr9 56944830 56944984 -67131188 - B1_Mus1 SINE Alu 0 148 2 1 1019 340 215 0 0 chr9 56944999 56945064 -67131108 - PB1 SINE Alu -36 91 27 1 1019 1552 38 0 11 chr9 56946353 56946540 -67129632 - B2_Mm1a SINE B2 -8 185 1 1 1019 470 312 7 0 chr9 56947296 56947437 -67128735 - B1F1 SINE Alu -7 142 1 1 1019 267 196 0 0 chr9 56947544 56947595 -67128577 + PB1D9 SINE Alu 62 112 -8 1 1019 21 0 0 0 chr9 56947670 56947691 -67128481 + AT_rich Low_complexity Low_complexity 1 21 0 1 1019 3806 218 106 25 chr9 56947737 56948722 -67127450 - MTC-int LTR MaLR -17 1241 178 1 1019 339 288 0 0 chr9 56948725 56948798 -67127374 + 4.5SRNA scRNA scRNA 4 76 -18 1 1019 323 256 106 49 chr9 56949164 56949287 -67126885 - B1F SINE Alu 0 149 20 1 1019 1402 90 16 5 chr9 56949343 56949533 -67126639 - B2_Mm2 SINE B2 -2 193 2 1 1019 343 342 0 34 chr9 56949557 56949675 -67126497 - PB1D9 SINE Alu 0 120 7 1 1019 305 343 0 79 chr9 56949580 56949732 -67126440 - ID_B1 SINE B4 -48 176 37 1 1019 348 341 43 29 chr9 56949763 56949902 -67126270 - ID_B1 SINE B4 -3 221 81 1 1019 471 184 117 18 chr9 56951059 56951170 -67125002 - B4A SINE B4 0 292 171 1 1019 1393 154 26 56 chr9 56951174 56951443 -67124729 - ORR1B1 LTR MaLR -8 386 126 1 1019 396 160 198 10 chr9 56951947 56952048 -67124124 + PB1D9 SINE Alu 1 120 0 1 1019 1975 161 125 5 chr9 56952886 56953262 -67122910 - MTC LTR MaLR 0 421 1 1 1019 1341 183 196 0 chr9 56953958 56954269 -67121903 - ORR1D1 LTR MaLR -2 372 1 1 1019 713 154 40 16 chr9 56954317 56954442 -67121730 - B1_Mus1 SINE Alu -20 128 1 1 1019 233 268 113 0 chr9 56954503 56954574 -67121598 + B1F2 SINE Alu 22 100 -49 1 1019 316 272 87 9 chr9 56954711 56954816 -67121356 + PB1 SINE Alu 18 124 -3 1 1019 283 224 17 0 chr9 56955600 56955658 -67120514 + ID4 SINE ID 3 61 -22 1 1019 200 140 23 23 chr9 56955818 56955862 -67120310 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1019 537 312 29 0 chr9 56956023 56956161 -67120011 + B1F SINE Alu 1 142 -7 1 1019 220 328 52 14 chr9 56956244 56956366 -67119806 + B1F2 SINE Alu 21 147 -2 1 1019 2953 15 0 0 chr9 56956903 56957234 -67118938 - L1Md_A LINE L1 0 6582 6252 1 1019 2446 24 58 0 chr9 56957535 56957828 -67118344 - L1Md_F2 LINE L1 0 6582 6273 1 1019 245 321 90 18 chr9 56958007 56958118 -67118054 - B1F1 SINE Alu -25 124 6 1 1019 760 199 14 7 chr9 56958164 56958311 -67117861 - B1_Mur4 SINE Alu -1 149 2 1 1019 233 194 13 20 chr9 56959039 56959098 -67117074 + MIRb SINE MIR 35 99 -169 1 1019 301 216 65 43 chr9 56960278 56960370 -67115802 - B4A SINE B4 -132 160 67 1 1019 294 247 95 21 chr9 56960544 56960639 -67115533 - B1_Mm SINE Alu 0 147 46 1 1019 342 67 0 0 chr9 56960647 56960692 -67115480 + (CATA)n Simple_repeat Simple_repeat 3 47 0 1 1019 356 243 145 14 chr9 56961789 56961927 -67114245 - RMER15 LTR ERVL -145 430 275 1 1019 335 265 108 0 chr9 56962428 56962530 -67113642 - PB1D7 SINE Alu -6 114 2 1 1019 623 237 78 39 chr9 56962917 56963123 -67113049 + ID_B1 SINE B4 3 216 -8 1 1019 568 180 133 0 chr9 56964435 56964563 -67111609 - B1_Mm SINE Alu 0 147 3 1 1019 492 266 133 41 chr9 56964600 56964796 -67111376 + B3 SINE B2 1 214 -2 1 1019 239 222 0 0 chr9 56965026 56965071 -67111101 + PB1D7 SINE Alu 1 45 -75 1 1019 25 0 0 0 chr9 56965088 56965113 -67111059 + AT_rich Low_complexity Low_complexity 1 25 0 1 1019 234 0 0 0 chr9 56965491 56965517 -67110655 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1019 430 213 237 17 chr9 56965525 56965702 -67110470 - B3 SINE B2 0 216 1 1 1019 216 0 0 0 chr9 56965825 56965849 -67110323 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1019 415 158 39 13 chr9 56966082 56966159 -67110013 - B3A SINE B2 -119 79 1 1 1019 188 222 0 43 chr9 56966284 56966331 -67109841 - L3 LINE CR1 -3192 1297 1253 1 1019 369 0 0 0 chr9 56966697 56966738 -67109434 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 1019 319 215 217 22 chr9 56967212 56967350 -67108822 - MER68 LTR ERVL -29 534 370 1 1019 528 221 39 0 chr9 56967361 56967482 -67108690 + B1_Mur3 SINE Alu 4 131 -18 1 1019 378 286 0 0 chr9 56967747 56967824 -67108348 + B1F SINE Alu 15 91 -58 1 1019 702 196 339 143 chr9 56967838 56968284 -67107888 - MT2A LTR ERVL 0 533 1 1 1019 316 258 129 6 chr9 56968544 56968655 -67107517 - PB1D9 SINE Alu -20 127 12 1 1019 800 178 199 6 chr9 56968731 56968912 -67107260 + B3 SINE B2 1 216 0 1 1019 527 259 72 119 chr9 56968931 56969124 -67107048 + B3 SINE B2 27 210 -6 1 1019 613 236 81 25 chr9 56969332 56969493 -67106679 - B3A SINE B2 0 198 29 1 1019 943 57 89 0 chr9 56969555 56969679 -67106493 - B1_Mus1 SINE Alu -12 136 2 1 1019 29 28 0 0 chr9 56969730 56969766 -67106406 + AT_rich Low_complexity Low_complexity 1 36 0 1 1019 1560 62 0 0 chr9 56969767 56969960 -67106212 + B2_Mm1a SINE B2 1 193 0 1 1019 1168 111 40 23 chr9 56969973 56970149 -67106023 + B2_Mm2 SINE B2 3 181 -14 1 1019 27 73 0 0 chr9 56970483 56970538 -67105634 + AT_rich Low_complexity Low_complexity 1 55 0 1 1019 703 210 28 0 chr9 56970618 56970761 -67105411 - B1_Mur2 SINE Alu 0 149 3 1 1019 351 105 0 0 chr9 56970817 56970874 -67105298 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 1 1019 286 329 32 52 chr9 56970881 56971035 -67105137 - RSINE1 SINE B4 -13 152 2 1 1019 226 283 141 0 chr9 56971219 56971318 -67104854 + PB1D10 SINE Alu 4 116 -1 1 1019 21 82 0 0 chr9 56971720 56971769 -67104403 + AT_rich Low_complexity Low_complexity 1 49 0 1 1019 461 122 0 13 chr9 56971947 56972022 -67104150 + B1_Mur4 SINE Alu 77 150 0 1 1019 234 274 123 0 chr9 56972084 56972157 -67104015 - PB1D10 SINE Alu -14 103 22 1 1019 358 345 96 27 chr9 56972182 56972328 -67103844 - Charlie1a DNA MER1_type -1299 156 1 1 1019 374 278 0 27 chr9 56972391 56972502 -67103670 - PB1D10 SINE Alu -9 108 1 1 1019 234 262 15 62 chr9 56973366 56973431 -67102741 + ID4 SINE ID 8 69 -14 1 1019 1003 149 72 0 chr9 56973987 56974168 -67102004 - B2_Mm2 SINE B2 0 195 2 1 1019 645 257 79 0 chr9 56974386 56974538 -67101634 - RSINE1 SINE B4 0 165 2 1 1019 390 261 73 6 chr9 56974573 56974719 -67101453 + B3A SINE B2 2 155 -40 1 1019 503 220 35 77 chr9 56974719 56974862 -67101310 + B1F2 SINE Alu 4 140 -9 1 1019 316 293 70 23 chr9 56974862 56974886 -67101286 + B2_Mm2 SINE B2 156 179 -16 1 1019 324 102 0 0 chr9 56975213 56975262 -67100910 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1019 180 0 0 0 chr9 56975529 56975549 -67100623 + (TGGA)n Simple_repeat Simple_repeat 1 20 0 1 1019 474 316 45 32 chr9 56976304 56976461 -67099711 + RSINE1 SINE B4 2 160 -5 1 1019 692 172 82 0 chr9 56976626 56976748 -67099424 + B1_Mur2 SINE Alu 12 143 -6 1 1019 334 222 264 18 chr9 56976773 56976883 -67099289 - RSINE1 SINE B4 -2 163 27 1 1019 405 177 12 25 chr9 56977092 56977173 -67098999 + RSINE1 SINE B4 2 81 -84 1 1019 987 80 0 7 chr9 56977265 56977403 -67098769 + B1_Mm SINE Alu 11 147 0 1 1019 247 286 0 0 chr9 56977420 56977476 -67098696 - PB1D7 SINE Alu -64 56 1 1 1019 234 259 0 0 chr9 56978293 56978347 -67097825 - ID SINE ID -169 55 2 1 1019 431 151 27 0 chr9 56979569 56979642 -67096530 - B2_Mm2 SINE B2 -41 154 80 1 1019 1247 41 0 0 chr9 56979976 56980123 -67096049 + B1_Mm SINE Alu 1 147 0 1 1019 188 100 25 0 chr9 56980127 56980167 -67096005 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 1 1019 276 321 18 54 chr9 56980350 56980462 -67095710 - PB1D10 SINE Alu -9 108 1 1 1019 1296 64 15 55 chr9 56980513 56980712 -67095460 + B2_Mm2 SINE B2 1 191 -4 1 1019 624 186 214 0 chr9 56980781 56980921 -67095251 - RLTR28 LTR ERVL -14 510 341 1 1019 879 135 13 45 chr9 56980966 56981121 -67095051 - RLTR28 LTR ERVL -374 150 1 1 1019 308 254 78 78 chr9 56981528 56981561 -67094611 - L1M4b LINE L1 -5082 2252 2220 1 1019 1150 48 0 52 chr9 56981561 56981716 -67094456 - B1_Mus1 SINE Alu 0 148 2 1 1019 308 254 78 78 chr9 56981716 56981810 -67094362 - L1M4b LINE L1 -5115 2219 2126 1 1019 845 171 21 7 chr9 56981919 56982060 -67094112 - B1_Mur2 SINE Alu 0 149 7 1 1019 207 0 0 0 chr9 56982093 56982116 -67094056 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1019 846 133 20 53 chr9 56982128 56982279 -67093893 - B1_Mus1 SINE Alu 0 148 3 1 1019 192 271 133 67 chr9 56983721 56983796 -67092376 - L2b LINE L2 -173 3202 3123 1 1019 369 281 60 26 chr9 56983909 56984026 -67092146 - B1F SINE Alu -23 126 6 1 1019 227 232 174 8 chr9 56988725 56988838 -67087334 - MIRb SINE MIR -103 165 32 1 1019 835 117 2 17 chr9 56990659 56990790 -67085382 + B1_Mus1 SINE Alu 19 147 -1 1 1019 355 276 51 73 chr9 56990810 56990947 -67085225 + ID_B1 SINE B4 86 219 -5 1 1019 184 233 23 0 chr9 56993159 56993202 -67082970 + MIRb SINE MIR 122 165 -103 1 1019 487 214 19 10 chr9 56993220 56993324 -67082848 + PB1D7 SINE Alu 1 105 -15 1 1019 189 0 0 0 chr9 56993330 56993351 -67082821 + (CG)n Simple_repeat Simple_repeat 1 21 0 1 1019 244 221 0 161 chr9 56993377 56993458 -67082714 + B4 SINE B4 72 139 -153 1 1019 351 270 39 39 chr9 56993411 56993515 -67082657 + PB1D7 SINE Alu 6 109 -11 1 1019 282 313 118 34 chr9 56996826 56996945 -67079227 - B1F1 SINE Alu -9 140 12 1 1019 259 86 0 0 chr9 56996945 56996980 -67079192 + ORR1D1 LTR MaLR 1 35 -339 1 1019 488 252 118 25 chr9 56997088 56997291 -67078881 + L1MB1 LINE L1 5777 5998 -170 1 1019 212 111 28 0 chr9 56997658 56997694 -67078478 - RSINE1 SINE B4 -126 39 3 1 1019 659 136 0 28 chr9 56997922 56998028 -67078144 - B1_Mur3 SINE Alu -5 144 42 1 1019 866 149 7 7 chr9 56998046 56998195 -67077977 - B1_Mur4 SINE Alu -1 149 1 1 1019 552 256 50 25 chr9 56998229 56998389 -67077783 - RSINE1 SINE B4 0 165 2 1 1019 359 228 25 0 chr9 56998453 56998532 -67077640 - ID4_ SINE ID 0 83 3 1 1019 325 217 0 0 chr9 56998581 56998641 -67077531 - PB1D7 SINE Alu -54 66 7 1 1019 347 276 102 17 chr9 56998906 56999024 -67077148 - B1_Mm SINE Alu -21 128 1 1 1019 425 247 31 10 chr9 56998930 56999028 -67077144 - ID_B1 SINE B4 -47 177 78 1 1019 542 172 152 0 chr9 56999141 56999240 -67076932 - B1_Mus2 SINE Alu -23 124 11 1 1019 1403 85 0 11 chr9 56999253 56999444 -67076728 - B2_Mm2 SINE B2 -6 189 1 1 1019 1158 51 0 0 chr9 56999474 56999612 -67076560 - B1_Mm SINE Alu -9 138 1 1 1019 223 184 0 0 chr9 56999775 56999813 -67076359 - PB1D9 SINE Alu -80 40 3 1 1019 235 178 0 0 chr9 56999955 57000000 -67076172 - B3 SINE B2 -7 209 165 1 1019 484 244 22 0 chr9 57000018 57000153 -67076019 - B3 SINE B2 -78 138 1 1 1019 274 107 0 35 chr9 57000159 57000217 -67075955 + (TTAA)n Simple_repeat Simple_repeat 1 56 0 2 1019 220 238 45 45 chr9 57000416 57000482 -67075690 + B1_Mur1 SINE Alu 84 149 0 3 1019 233 257 149 0 chr9 57000594 57000668 -67075504 + B1F SINE Alu 3 87 -62 4 1019 249 33 0 0 chr9 57000680 57000710 -67075462 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1019 253 210 244 12 chr9 57000869 57000951 -67075221 - L1MC4 LINE L1 -1123 6919 6819 6 1019 290 280 166 6 chr9 57000991 57001160 -67075012 - MLT1B LTR MaLR -8 382 187 7 1019 2064 75 0 86 chr9 57001188 57001473 -67074699 + ORR1A2 LTR MaLR 1 269 -58 8 1019 3129 37 8 8 chr9 57001473 57001855 -67074317 + L1Md_F3 LINE L1 6201 6582 -2 9 1019 2064 75 0 86 chr9 57001855 57001906 -67074266 + ORR1A2 LTR MaLR 270 308 -19 8 1019 754 250 75 47 chr9 57002230 57002324 -67073848 + ID_B1 SINE B4 2 95 -129 1 1019 2264 121 73 14 chr9 57002324 57002692 -67073480 + ORR1B1 LTR MaLR 1 390 -4 1 1019 754 250 75 47 chr9 57002692 57002811 -67073361 + ID_B1 SINE B4 96 221 -3 1 1019 276 218 59 9 chr9 57003097 57003179 -67072993 + B1_Mur1 SINE Alu 39 113 -36 1 1019 254 167 182 0 chr9 57005232 57005298 -67070874 - ID4 SINE ID -1 82 5 1 1019 373 255 10 21 chr9 57006417 57006513 -67069659 + PB1D10 SINE Alu 5 99 -18 1 1019 226 265 0 56 chr9 57006544 57006616 -67069556 + RSINE1 SINE B4 51 118 -47 1 1019 441 0 0 0 chr9 57006641 57006690 -67069482 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1019 359 322 20 92 chr9 57006709 57006904 -67069268 + B4A SINE B4 102 282 -10 1 1019 261 0 0 0 chr9 57006912 57006941 -67069231 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1019 311 286 60 120 chr9 57007000 57007167 -67069005 - L1ME3A LINE L1 -16 6157 6001 1 1019 3987 173 67 67 chr9 57007173 57007350 -67068822 - RMER1A Other Other -4 1026 862 2 1019 1114 96 0 0 chr9 57007350 57007496 -67068676 + B1_Mus1 SINE Alu 2 147 -1 2 1019 3987 173 67 67 chr9 57007496 57007518 -67068654 - RMER1A Other Other -169 861 855 2 1019 546 16 0 0 chr9 57007518 57007581 -67068591 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 2 1019 3987 173 67 67 chr9 57007581 57008295 -67067877 - RMER1A Other Other -176 854 112 2 1019 468 242 77 67 chr9 57008434 57008629 -67067543 - B3A SINE B2 -1 197 1 2 1019 2967 93 8 91 chr9 57011094 57011569 -67064603 + RLTR9B LTR ERVK 2 437 0 2 1019 4005 85 67 34 chr9 57011920 57012506 -67063666 + RLTR1D LTR ERV1 1 605 0 2 1019 344 271 47 0 chr9 57012577 57012684 -67063488 + PB1D10 SINE Alu 5 116 -1 2 1019 4498 208 125 26 chr9 57012992 57013557 -67062615 + ORR1C1-int LTR MaLR 93 712 -797 2 1019 435 127 14 27 chr9 57013557 57013630 -67062542 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 2 1019 4498 208 125 26 chr9 57013630 57013648 -67062524 + ORR1C1-int LTR MaLR 713 781 -728 2 1019 1229 54 0 0 chr9 57013648 57013795 -67062377 + B1_Mus1 SINE Alu 2 148 0 2 1019 4498 208 125 26 chr9 57013795 57014499 -67061673 + ORR1C1-int LTR MaLR 782 1507 -2 2 1019 308 221 0 0 chr9 57014499 57014567 -67061605 + ORR1C1 LTR MaLR 1 68 -316 2 1019 1568 250 55 92 chr9 57014567 57015434 -67060738 + RMER12 LTR ERVK 1 802 -1046 3 1019 263 93 0 23 chr9 57015520 57015564 -67060608 + (TCCCC)n Simple_repeat Simple_repeat 3 45 0 3 1019 422 214 201 28 chr9 57015564 57015708 -67060464 + RMER12 LTR ERVK 995 1163 -159 3 1019 1519 169 62 3 chr9 57015775 57016066 -67060106 + ORR1C1 LTR MaLR 63 370 -8 2 1019 992 59 0 0 chr9 57016135 57016270 -67059902 - B1_Mus1 SINE Alu -5 143 9 3 127 538 345 77 0 chr9 57016306 57016567 -67059605 - Lx8 LINE L1 -189 7284 7004 3 1020 1451 252 108 8 chr9 57016576 57016964 -67059208 + Lx8 LINE L1 6129 6555 -918 3 1020 1688 114 15 157 chr9 57016966 57017388 -67058784 - ORR1B1 LTR MaLR 0 394 1 3 1020 1398 142 298 6 chr9 57017389 57017715 -67058457 - MTC LTR MaLR 0 421 1 3 1020 714 262 26 16 chr9 57017715 57017905 -67058267 + RMER15-int LTR ERVL 4482 4673 -326 3 1020 204 125 0 0 chr9 57017922 57017954 -67058218 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1020 1610 155 40 5 chr9 57017954 57018276 -67057896 + L1_Mur3 LINE L1 4144 4482 -1401 3 1020 672 177 5 75 chr9 57018245 57018446 -67057726 - Lx7 LINE L1 -148 7548 7362 4 1020 238 255 0 0 chr9 57018446 57018493 -67057679 + polypurine Low_complexity Low_complexity 2 48 0 4 1020 1956 110 32 0 chr9 57018513 57018822 -67057350 - ORR1A2 LTR MaLR -8 319 1 4 1020 180 0 0 0 chr9 57018825 57018845 -67057327 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1020 1187 54 0 0 chr9 57018851 57018998 -67057174 - B1_Mm SINE Alu 0 147 1 4 1020 384 22 0 0 chr9 57019039 57019084 -67057088 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1020 241 189 22 11 chr9 57019240 57019331 -67056841 + RMER17C LTR ERVK 169 260 -150 4 1020 255 266 63 0 chr9 57019353 57019432 -67056740 + RMER15 LTR ERVL 492 575 0 3 1020 910 143 21 0 chr9 57019540 57019680 -67056492 - B1_Mur2 SINE Alu -6 143 1 4 1020 344 312 0 35 chr9 57019779 57019922 -67056250 + C-rich Low_complexity Low_complexity 1 138 0 4 1020 614 277 17 17 chr9 57020090 57020270 -67055902 + B3A SINE B2 3 182 -16 4 1020 231 114 0 0 chr9 57020277 57020312 -67055860 - B1F2 SINE Alu -106 43 9 5 1020 522 0 0 0 chr9 57020643 57020701 -67055471 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 5 1020 1001 29 151 0 chr9 57020701 57020840 -67055332 - B2_Mm1a SINE B2 -33 160 1 5 1020 1788 193 61 151 chr9 57020841 57021495 -67054677 - RMER19C LTR ERVK -16 595 1 5 1020 1982 171 92 7 chr9 57021900 57022313 -67053859 - Lx9 LINE L1 0 7644 7197 5 1020 1573 43 0 0 chr9 57022480 57022666 -67053506 - B2_Mm1a SINE B2 -6 187 2 5 1020 389 300 76 45 chr9 57022805 57022962 -67053210 - RSINE1 SINE B4 -1 164 3 5 1020 515 241 52 15 chr9 57023370 57023505 -67052667 - B1_Mur2 SINE Alu -9 140 1 5 1020 1570 22 22 0 chr9 57023612 57023793 -67052379 - B2_Mm2 SINE B2 -10 185 1 5 1020 203 152 0 21 chr9 57025712 57025759 -67050413 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1020 1382 85 26 0 chr9 57026465 57026654 -67049518 + B2_Mm2 SINE B2 2 195 0 6 1020 304 233 84 37 chr9 57026740 57026847 -67049325 + L1_Mur3 LINE L1 703 814 -6898 6 1020 678 244 15 0 chr9 57026917 57027048 -67049124 + ETnERV2-int LTR ERVK 7070 7202 -204 6 1020 290 248 20 0 chr9 57027597 57027698 -67048474 + L1_Mur3 LINE L1 827 929 -6783 6 1020 589 274 42 33 chr9 57028455 57028670 -67047502 + ID_B1 SINE B4 8 224 0 6 1020 872 234 30 0 chr9 57029374 57029575 -67046597 + B3 SINE B2 1 207 -9 6 1020 824 285 50 91 chr9 57029955 57030318 -67045854 - ORR1E LTR MaLR -6 353 6 6 1020 664 126 99 0 chr9 57030318 57030372 -67045800 + RMER6-int LTR ERVK 239 293 -2884 6 1020 414 0 0 0 chr9 57030372 57030418 -67045754 + (CAGA)n Simple_repeat Simple_repeat 4 49 0 6 1020 664 126 99 0 chr9 57030418 57030474 -67045698 + RMER6-int LTR ERVK 294 358 -2819 6 1020 252 226 0 0 chr9 57030898 57030951 -67045221 + B4 SINE B4 2 54 -238 6 1020 207 0 0 0 chr9 57031204 57031227 -67044945 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 6 1020 652 246 7 7 chr9 57031241 57031384 -67044788 - B3 SINE B2 0 216 74 7 1020 519 17 0 0 chr9 57031632 57031692 -67044480 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1020 1166 69 0 0 chr9 57031692 57031836 -67044336 - B1_Mus2 SINE Alu -3 144 1 7 1020 506 234 7 84 chr9 57032856 57033010 -67043162 - RLTR33 LTR ERVK -85 593 452 7 1020 252 239 28 0 chr9 57033245 57033316 -67042856 - RLTR19C LTR ERVK -409 97 25 7 1020 228 35 0 0 chr9 57033384 57033413 -67042759 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1020 1252 131 23 23 chr9 57033588 57033806 -67042366 - URR1A DNA MER1_type -1 225 8 7 1020 394 283 26 9 chr9 57034546 57034660 -67041512 + ID_B1 SINE B4 49 164 -60 7 1020 250 398 21 54 chr9 57034760 57034946 -67041226 + B3 SINE B2 3 182 -34 7 1020 537 44 0 0 chr9 57035736 57035804 -67040368 + (TC)n Simple_repeat Simple_repeat 1 68 0 7 1020 525 308 10 83 chr9 57036301 57036579 -67039593 - ORR1E LTR MaLR -5 374 90 8 1020 262 156 91 30 chr9 57036594 57036660 -67039512 + ORR1C1-int LTR MaLR 1440 1509 0 8 1020 1755 202 18 54 chr9 57036661 57037049 -67039123 + ORR1C1 LTR MaLR 5 378 0 8 1020 403 18 18 18 chr9 57037055 57037112 -67039060 + (TTA)n Simple_repeat Simple_repeat 2 58 0 8 1020 3443 34 55 7 chr9 57037185 57037601 -67038571 + RLTR10C LTR ERVK 1 436 0 8 1020 1260 58 105 0 chr9 57038020 57038191 -67037981 + B2_Mm2 SINE B2 1 189 -6 8 1020 2196 94 65 0 chr9 57038242 57038549 -67037623 + ORR1A2 LTR MaLR 1 327 0 8 1020 236 306 210 0 chr9 57038775 57038899 -67037273 + RSINE1 SINE B4 2 151 -14 8 1020 351 377 12 25 chr9 57039046 57039209 -67036963 + RSINE1 SINE B4 2 162 -3 8 1020 220 349 15 31 chr9 57040009 57040139 -67036033 + RSINE1 SINE B4 3 130 -35 8 1020 310 228 43 9 chr9 57041983 57042098 -67034074 + (TA)n Simple_repeat Simple_repeat 2 120 0 8 1020 1866 169 93 16 chr9 57042254 57042639 -67033533 + RMER16-int LTR ERVK 3565 3979 -1427 9 1020 1976 269 19 56 chr9 57042874 57043420 -67032752 + RMER16-int LTR ERVK 3980 4503 -903 9 1020 369 0 0 0 chr9 57043420 57043461 -67032711 + (TTG)n Simple_repeat Simple_repeat 2 42 0 9 1020 1095 89 0 0 chr9 57043461 57043602 -67032570 - B1_Mus2 SINE Alu 0 147 7 9 1020 1976 285 49 33 chr9 57043602 57044053 -67032119 + RMER16-int LTR ERVK 4504 5031 -375 9 1020 3343 144 82 58 chr9 57045555 57046587 -67029585 - RLTR13D1 LTR ERVK 0 1023 1 9 1020 873 263 19 5 chr9 57046736 57046946 -67029226 + B3 SINE B2 1 213 -3 9 1020 3228 137 9 13 chr9 57047204 57047759 -67028413 + RLTR1D LTR ERV1 37 589 -16 9 1020 1500 43 32 5 chr9 57048075 57048263 -67027909 + B2_Mm1t SINE B2 1 193 0 9 1020 1214 34 0 33 chr9 57048804 57048956 -67027216 + B1_Mus1 SINE Alu 2 148 0 9 1020 764 236 78 41 chr9 57051143 57051413 -67024759 - MYSERV-int LTR ERVK -2045 4505 4226 9 1020 1579 274 58 36 chr9 57051420 57052002 -67024170 + RLTR1 LTR ERV1 30 624 0 9 1020 4270 215 5 6 chr9 57052003 57052860 -67023312 - MurERV4-int LTR ERVK -267 4993 4138 1 1020 3643 83 34 40 chr9 57052860 57053453 -67022719 + RLTR1D LTR ERV1 1 589 -16 1 1020 3459 179 49 63 chr9 57053468 57053954 -67022218 - MurERV4-int LTR ERVK -5371 3588 3084 1 1020 1661 32 0 0 chr9 57053954 57054143 -67022029 + B2_Mm1a SINE B2 1 189 -4 1 1020 3459 179 49 63 chr9 57054143 57054403 -67021769 - MurERV4-int LTR ERVK -5876 3083 2838 1 1020 1248 48 0 0 chr9 57054403 57054550 -67021622 + B1_Mus2 SINE Alu 1 147 0 1 1020 3459 179 49 63 chr9 57054550 57054594 -67021578 - MurERV4-int LTR ERVK -6122 2837 2808 1 1020 1683 239 171 12 chr9 57054589 57055149 -67021023 - MYSERV6-int LTR ERVK -2131 3129 2481 1 1020 1464 274 20 83 chr9 57055123 57055200 -67020972 - MYSERV6-int LTR ERVK -7033 1926 1855 1 1020 967 67 82 0 chr9 57055200 57055335 -67020837 - B1_Mm SINE Alu 0 147 2 1 1020 1382 61 44 0 chr9 57055339 57055519 -67020653 - B2_Mm2 SINE B2 -7 188 1 1 1020 1464 274 20 82 chr9 57055519 57056049 -67020123 - MYSERV6-int LTR ERVK -7105 1854 1360 1 1020 1299 57 57 6 chr9 57056049 57056226 -67019946 - B2_Mm2 SINE B2 -9 186 1 1 1020 1332 303 24 75 chr9 57056226 57056427 -67019745 - MYSERV6-int LTR ERVK -1681 1496 1134 1 1020 1240 61 0 38 chr9 57056431 57056617 -67019555 + B2_Mm2 SINE B2 9 187 -8 1 1020 1868 276 40 35 chr9 57056617 57057293 -67018879 - MYSERV6-int LTR ERVK -7814 1145 467 1 1020 249 174 50 10 chr9 57057930 57058029 -67018143 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 1020 477 0 0 0 chr9 57058057 57058110 -67018062 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1020 360 143 0 28 chr9 57058342 57058414 -67017758 + RLTR42-int LTR ERVK 1538 1607 -3915 1 1020 1237 64 12 6 chr9 57058490 57058662 -67017510 + B2_Mm2 SINE B2 9 181 -14 1 1020 1422 78 5 0 chr9 57058730 57058922 -67017250 + B2_Mm1a SINE B2 1 193 0 1 1020 225 0 0 0 chr9 57059580 57059605 -67016567 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1020 864 252 145 53 chr9 57059605 57060138 -67016034 + RLTR18 LTR ERVK 31 502 -10 1 1020 297 205 82 24 chr9 57060140 57060225 -67015947 - RLTR23 LTR ERV1 -2 428 339 1 1020 207 0 0 0 chr9 57060574 57060597 -67015575 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1020 433 155 12 12 chr9 57060672 57060757 -67015415 + RLTR42-int LTR ERVK 1929 2013 -3509 1 1020 311 344 0 58 chr9 57060883 57061074 -67015098 + CT-rich Low_complexity Low_complexity 1 180 0 1 1020 292 211 0 0 chr9 57061193 57061250 -67014922 + B2_Mm2 SINE B2 8 64 -131 1 1020 219 125 0 0 chr9 57061278 57061318 -67014854 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1020 1638 16 0 0 chr9 57061347 57061536 -67014636 - B2_Mm1a SINE B2 -3 190 2 1 1020 557 151 0 11 chr9 57061536 57061625 -67014547 + RLTR42-int LTR ERVK 2165 2253 -3269 1 1020 388 200 12 0 chr9 57062093 57062173 -67013999 + B3 SINE B2 50 130 -86 1 1020 300 173 36 63 chr9 57062204 57062315 -67013857 + RLTR42-int LTR ERVK 2222 2329 -3193 1 1020 450 189 184 24 chr9 57062318 57062443 -67013729 + RLTR18B LTR ERVK 364 508 -4 1 1020 1841 193 87 54 chr9 57062443 57062904 -67013268 + RLTR42-int LTR ERVK 2373 2848 -2674 1 1020 297 271 21 10 chr9 57063118 57063215 -67012957 - PB1 SINE Alu -2 125 28 1 1020 336 268 30 101 chr9 57063431 57063630 -67012542 - RLTR13D3 LTR ERVK -42 1072 888 1 1020 219 214 0 0 chr9 57063806 57063848 -67012324 - B2_Mm2 SINE B2 -153 42 1 1 1020 207 0 0 0 chr9 57064230 57064253 -67011919 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1020 1926 147 70 6 chr9 57064279 57064634 -67011538 + ORR1C1 LTR MaLR 1 378 0 1 1020 527 0 0 16 chr9 57065143 57065207 -67010965 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1020 340 337 0 0 chr9 57065903 57066001 -67010171 + C-rich Low_complexity Low_complexity 4 101 0 1 1020 823 105 37 8 chr9 57066544 57066678 -67009494 + B1_Mus2 SINE Alu 10 147 0 1 1020 544 230 42 35 chr9 57067077 57067221 -67008951 + B1F2 SINE Alu 4 148 -1 1 1020 365 155 14 14 chr9 57068054 57068126 -67008046 + B1_Mus2 SINE Alu 76 147 0 1 1020 193 0 94 0 chr9 57068126 57068158 -67008014 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 1 1020 1200 87 35 0 chr9 57069446 57069619 -67006553 + B2_Mm2 SINE B2 3 181 -14 1 1020 230 122 0 68 chr9 57069670 57069714 -67006458 + B2_Mm2 SINE B2 47 87 -108 1 1020 180 0 0 0 chr9 57069735 57069755 -67006417 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1020 1225 123 9 38 chr9 57069756 57069920 -67006252 + LTRIS4 LTR ERV1 303 466 -41 1 1020 2325 71 113 11 chr9 57069920 57070274 -67005898 + RLTR10 LTR ERVK 1 390 0 1 1020 1225 123 9 38 chr9 57070274 57070320 -67005852 + LTRIS4 LTR ERV1 467 507 0 1 1020 844 84 30 8 chr9 57070320 57070451 -67005721 + ORR1A0 LTR MaLR 213 346 0 1 1020 2413 120 8 16 chr9 57070451 57070831 -67005341 + ORR1A0-int LTR MaLR 1 377 -1586 1 1020 414 102 0 0 chr9 57070821 57070880 -67005292 + ORR1A0-int LTR MaLR 899 957 -835 1 1020 295 111 0 0 chr9 57070880 57070925 -67005247 - MT-int LTR MaLR -1053 45 1 1 1020 1449 72 48 31 chr9 57070926 57071155 -67005017 + MTB LTR MaLR 168 400 0 1 1020 1079 193 4 44 chr9 57071773 57071834 -67004338 - RLTR42 LTR ERVK 0 239 182 1 1020 2163 143 27 11 chr9 57071834 57072208 -67003964 + RLTR14 LTR ERV1 1 380 -2 1 1020 1079 193 4 44 chr9 57072208 57072395 -67003777 - RLTR42 LTR ERVK -58 181 1 1 1020 293 111 109 16 chr9 57072395 57072459 -67003713 - RLTR42-int LTR ERVK 0 5522 5453 1 1020 397 217 37 19 chr9 57072529 57072637 -67003535 - RLTR42-int LTR ERVK -193 5329 5220 1 1020 1341 148 169 89 chr9 57072651 57072896 -67003276 + ORR1B2 LTR MaLR 1 285 -82 1 1020 1133 75 0 0 chr9 57072896 57073043 -67003129 + B1_Mus2 SINE Alu 1 147 0 1 1020 1341 148 169 89 chr9 57073043 57073123 -67003049 + ORR1B2 LTR MaLR 286 352 -15 1 1020 628 111 111 0 chr9 57073135 57073252 -67002920 - RLTR42-int LTR ERVK -333 5189 5060 1 1020 805 37 9 0 chr9 57073252 57073359 -67002813 + B1_Mus2 SINE Alu 40 147 0 1 1020 7118 141 85 62 chr9 57073365 57074603 -67001569 - RLTR42-int LTR ERVK -461 5061 3744 1 1020 1330 68 17 0 chr9 57074603 57074780 -67001392 + B2_Mm2 SINE B2 2 181 -14 1 1020 1036 113 0 0 chr9 57074780 57074922 -67001250 - B1_Mus1 SINE Alu -5 143 2 1 1020 7118 141 85 62 chr9 57074922 57075223 -67000949 - RLTR42-int LTR ERVK -1779 3743 3487 1 1020 512 82 0 0 chr9 57075223 57075296 -67000876 - RLTR9D LTR ERVK 0 420 348 1 1020 998 106 88 6 chr9 57075292 57075463 -67000709 - RLTR9D LTR ERVK -218 185 1 1 1020 6505 168 81 75 chr9 57075463 57076936 -66999236 - RLTR42-int LTR ERVK -2031 3491 1985 1 1020 819 169 162 11 chr9 57076936 57077121 -66999051 + B3 SINE B2 1 213 -3 1 1020 6505 168 81 75 chr9 57077121 57077178 -66998994 - RLTR42-int LTR ERVK -3538 1984 1955 1 1020 198 103 0 0 chr9 57077178 57077207 -66998965 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1020 6505 168 81 75 chr9 57077207 57077312 -66998860 - RLTR42-int LTR ERVK -3568 1954 1846 1 1020 640 189 61 114 chr9 57077552 57077821 -66998351 - RLTR42-int LTR ERVK -3653 1869 1624 1 1020 2980 224 57 92 chr9 57078201 57079114 -66997058 + RMER1B Other Other 185 1065 -1 1 1020 276 169 68 0 chr9 57079155 57079214 -66996958 + PB1D10 SINE Alu 45 107 -10 1 1020 419 291 62 23 chr9 57079449 57079625 -66996547 - MER5A DNA MER1_type -2 187 5 1 1020 474 244 8 17 chr9 57080577 57080694 -66995478 + PB1D10 SINE Alu 2 117 0 1 1020 747 266 20 15 chr9 57081262 57081464 -66994708 - ID_B1 SINE B4 -20 204 2 1 1020 547 250 61 0 chr9 57081501 57081633 -66994539 - B1F2 SINE Alu 0 149 10 1 1020 274 268 27 27 chr9 57082340 57082413 -66993759 + ID_B1 SINE B4 152 224 0 1 1020 320 318 49 55 chr9 57082380 57082435 -66993737 + ID_B1 SINE B4 43 224 0 1 1020 407 291 16 8 chr9 57082435 57082563 -66993609 + B1F SINE Alu 21 149 0 1 1020 1335 74 26 0 chr9 57082565 57082754 -66993418 + B2_Mm2 SINE B2 2 195 0 1 1020 405 288 50 7 chr9 57082763 57082903 -66993269 + B1F SINE Alu 3 148 -1 1 1020 443 295 85 0 chr9 57082909 57083038 -66993134 - ID_B1 SINE B4 -8 216 77 1 1020 447 68 0 0 chr9 57083552 57083611 -66992561 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1020 1121 62 0 7 chr9 57083821 57083967 -66992205 + B1_Mm SINE Alu 3 147 0 1 1020 438 250 0 27 chr9 57084965 57085076 -66991096 - PB1D10 SINE Alu 0 117 10 1 1020 413 202 42 42 chr9 57085128 57085247 -66990925 - PB1D9 SINE Alu -1 119 1 1 1020 212 175 0 0 chr9 57085398 57085438 -66990734 + A-rich Low_complexity Low_complexity 1 40 0 1 1020 1200 47 0 0 chr9 57085441 57085589 -66990583 + B1_Mus1 SINE Alu 1 148 0 1 1020 236 30 30 0 chr9 57085589 57085622 -66990550 + (GAA)n Simple_repeat Simple_repeat 2 35 0 1 1020 404 257 62 28 chr9 57086158 57086302 -66989870 + B1F SINE Alu 1 149 0 1 1020 1547 219 102 5 chr9 57086707 57087078 -66989094 - MTD LTR MaLR -12 407 1 1 1020 23 0 0 0 chr9 57087817 57087840 -66988332 + AT_rich Low_complexity Low_complexity 1 23 0 1 1020 230 203 43 0 chr9 57088007 57088076 -66988096 - ID4 SINE ID -9 74 3 1 1020 476 136 95 19 chr9 57091002 57091107 -66985065 - B1_Mus1 SINE Alu 0 148 36 1 1020 549 166 185 58 chr9 57091125 57091298 -66984874 - B2_Mm2 SINE B2 0 195 1 1 1020 368 221 111 37 chr9 57091423 57091531 -66984641 - PB1D10 SINE Alu 0 117 2 1 1020 279 133 0 0 chr9 57092633 57092678 -66983494 + (TTC)n Simple_repeat Simple_repeat 2 46 0 1 1020 1109 75 0 0 chr9 57092680 57092826 -66983346 - B1_Mus2 SINE Alu 0 147 2 1 1020 361 313 83 48 chr9 57095337 57095565 -66980607 - Cheshire DNA MER1_type -2143 277 42 1 1020 1128 82 0 0 chr9 57096827 57096973 -66979199 + B1_Mm SINE Alu 2 147 0 1 1020 598 231 8 0 chr9 57097355 57097476 -66978696 - B1F1 SINE Alu -21 128 7 1 1020 189 0 0 0 chr9 57099277 57099298 -66976874 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 1 1020 234 200 55 0 chr9 57100002 57100057 -66976115 + MLT1A0 LTR MaLR 24 81 -284 1 1020 211 234 64 0 chr9 57100309 57100356 -66975816 + B1_Mur1 SINE Alu 99 148 -1 1 1020 464 206 138 14 chr9 57101463 57101601 -66974571 - MIRb SINE MIR -80 188 34 1 1020 252 0 0 0 chr9 57103369 57103397 -66972775 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1020 2020 147 12 14 chr9 57103629 57103973 -66972199 + ORR1B1 LTR MaLR 41 383 -11 1 1020 326 304 0 0 chr9 57104690 57104792 -66971380 + (CTGGGG)n Simple_repeat Simple_repeat 1 102 0 1 1020 443 163 50 37 chr9 57107086 57107205 -66968967 - B1_Mur2 SINE Alu -20 129 9 1 1020 352 237 48 81 chr9 57107119 57107243 -66968929 - ID_B1 SINE B4 -51 173 54 1 1020 228 35 0 0 chr9 57107476 57107505 -66968667 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1020 216 0 0 0 chr9 57107889 57107913 -66968259 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1020 210 143 0 0 chr9 57107913 57107948 -66968224 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 1 1020 385 163 35 0 chr9 57107961 57108047 -66968125 + CT-rich Low_complexity Low_complexity 4 92 0 1 1020 297 255 133 0 chr9 57108512 57108610 -66967562 - B1_Mus1 SINE Alu 0 148 38 1 1020 235 0 0 54 chr9 57110416 57110453 -66965719 + (CGGGG)n Simple_repeat Simple_repeat 2 36 0 1 1020 432 171 0 0 chr9 57110657 57110733 -66965439 + MIRc SINE MIR 69 144 -124 1 1020 271 192 3 0 chr9 57110803 57110870 -66965302 + B1F SINE Alu 40 107 -13 2 1020 662 215 28 7 chr9 57110890 57111035 -66965137 - B1_Mur2 SINE Alu -1 148 1 2 1020 427 270 8 34 chr9 57112635 57112754 -66963418 + B1F SINE Alu 24 139 -10 2 1020 267 103 0 0 chr9 57112754 57112793 -66963379 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1020 223 156 44 0 chr9 57112795 57112840 -66963332 + B1F SINE Alu 99 145 -4 2 1020 213 196 0 121 chr9 57112865 57112906 -66963266 + B1F SINE Alu 99 139 -10 2 1020 249 33 0 0 chr9 57112906 57112936 -66963236 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1020 213 196 0 121 chr9 57112936 57112952 -66963220 + B1F SINE Alu 140 149 0 2 1020 376 265 0 0 chr9 57113471 57113554 -66962618 + ID_B1 SINE B4 72 154 -70 2 1020 207 307 103 40 chr9 57114178 57114359 -66961813 + L2c LINE L2 3132 3327 -48 2 1020 521 267 30 8 chr9 57114439 57114571 -66961601 + B1F SINE Alu 15 149 0 2 1020 369 0 0 0 chr9 57114600 57114641 -66961531 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1020 261 0 0 0 chr9 57114838 57114867 -66961305 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1020 550 176 73 18 chr9 57115805 57115915 -66960257 - PB1D10 SINE Alu -1 116 1 2 1020 180 0 0 0 chr9 57116203 57116223 -66959949 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 2 1020 23 0 0 0 chr9 57116620 57116643 -66959529 + AT_rich Low_complexity Low_complexity 1 23 0 2 1020 388 346 49 10 chr9 57116671 57116875 -66959297 + MIR SINE MIR 49 260 -2 2 1020 381 162 0 0 chr9 57117587 57117655 -66958517 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1020 295 314 39 130 chr9 57117726 57118011 -66958161 + MLT1A0 LTR MaLR 34 292 -73 2 1020 1024 240 9 39 chr9 57119240 57119470 -66956702 + ID_B1 SINE B4 2 224 0 2 1020 248 170 19 0 chr9 57119548 57119601 -66956571 + CT-rich Low_complexity Low_complexity 2 55 0 2 1020 180 0 0 0 chr9 57120038 57120058 -66956114 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1020 327 315 81 0 chr9 57120099 57120210 -66955962 - B1F2 SINE Alu -29 120 1 2 1020 234 273 0 147 chr9 57120210 57120334 -66955838 + MLT1L LTR MaLR 227 328 -282 2 1020 282 254 0 0 chr9 57121536 57121599 -66954573 + B1F SINE Alu 87 149 0 2 1020 351 0 0 0 chr9 57121601 57121640 -66954532 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1020 315 326 0 11 chr9 57121991 57122081 -66954091 + polypyrimidine Low_complexity Low_complexity 3 91 0 2 1020 292 270 89 10 chr9 57122491 57122592 -66953580 - RSINE1 SINE B4 -53 112 4 2 1020 255 373 22 22 chr9 57122638 57122651 -66953521 - YREP_Mm Unknown Unknown -1498 314 268 2 1020 589 184 48 0 chr9 57122651 57122754 -66953418 + B1F SINE Alu 15 122 -27 2 1020 255 373 22 22 chr9 57122754 57122775 -66953397 - YREP_Mm Unknown Unknown -1498 267 178 2 1020 214 196 19 19 chr9 57123283 57123335 -66952837 + MIRb SINE MIR 114 165 -103 2 1020 457 209 127 25 chr9 57123341 57123459 -66952713 + B3A SINE B2 2 131 -67 2 1020 693 117 39 0 chr9 57123498 57123601 -66952571 + B3 SINE B2 1 107 -109 2 1020 826 86 16 8 chr9 57123670 57123799 -66952373 + (GAAA)n Simple_repeat Simple_repeat 3 132 0 2 1020 233 171 173 62 chr9 57123801 57123882 -66952290 + PB1D7 SINE Alu 24 113 -7 2 1020 1044 66 0 0 chr9 57124615 57124752 -66951420 + (CA)n Simple_repeat Simple_repeat 2 138 0 2 1020 887 200 130 0 chr9 57124797 57124982 -66951190 - B3 SINE B2 -7 209 1 2 1020 228 67 0 0 chr9 57124999 57125029 -66951143 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1020 244 297 239 11 chr9 57125031 57125123 -66951049 - PB1D9 SINE Alu -5 115 3 2 1020 183 80 0 0 chr9 57125135 57125160 -66951012 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2 1020 382 225 25 0 chr9 57125160 57125240 -66950932 - ID_B1 SINE B4 0 224 143 2 1020 225 238 0 31 chr9 57125246 57125311 -66950861 + (TATG)n Simple_repeat Simple_repeat 4 66 0 2 1020 671 272 73 23 chr9 57125330 57125590 -66950582 - B4A SINE B4 -18 274 2 2 1020 203 143 0 111 chr9 57125972 57126035 -66950137 + GA-rich Low_complexity Low_complexity 2 57 0 2 1020 514 306 47 48 chr9 57126699 57126937 -66949235 + MIR SINE MIR 1 240 -22 2 1020 391 224 84 147 chr9 57127791 57128016 -66948156 - MER33 DNA MER1_type 0 324 114 2 1020 1419 94 16 0 chr9 57128110 57128301 -66947871 + B2_Mm2 SINE B2 1 194 -1 2 1020 449 224 103 0 chr9 57128368 57128475 -66947697 - B1F1 SINE Alu -17 132 15 2 1020 220 186 0 44 chr9 57129307 57129352 -66946820 - MIR SINE MIR -107 155 113 2 1020 274 324 92 42 chr9 57130348 57130490 -66945682 - MIRm SINE MIR -94 182 34 2 1020 190 289 86 32 chr9 57131287 57131380 -66944792 + MIR3 SINE MIR 83 183 -85 2 1020 252 86 0 0 chr9 57131536 57131571 -66944601 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1020 389 300 84 21 chr9 57131625 57131768 -66944404 - MER63B DNA AcHobo 0 436 285 2 1020 219 146 0 0 chr9 57131831 57131872 -66944300 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 2 1020 532 242 31 8 chr9 57131954 57132083 -66944089 - B1F SINE Alu 0 149 18 2 1020 1355 58 58 6 chr9 57132178 57132352 -66943820 + B2_Mm1a SINE B2 2 184 -9 2 1020 207 365 23 12 chr9 57132439 57132525 -66943647 + L2a LINE L2 3336 3422 -4 2 1020 731 118 0 52 chr9 57132554 57132670 -66943502 + B1_Mus1 SINE Alu 1 110 -38 2 1020 315 0 0 0 chr9 57132675 57132710 -66943462 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1020 290 372 42 50 chr9 57132814 57133052 -66943120 - MER45C DNA Tip100 -348 605 370 2 1020 987 120 38 32 chr9 57133240 57133429 -66942743 + ORR1B1 LTR MaLR 1 157 -237 2 1020 3145 147 52 33 chr9 57133432 57134072 -66942100 + ORR1B1-int LTR MaLR 684 1370 0 2 1020 646 76 0 11 chr9 57134072 57134165 -66942007 + ORR1B1 LTR MaLR 1 92 -302 2 1020 314 48 24 0 chr9 57134155 57134197 -66941975 + ORR1B1 LTR MaLR 344 386 -8 2 1020 391 188 0 59 chr9 57134601 57134669 -66941503 + ID4 SINE ID 16 79 -4 2 1020 346 284 92 112 chr9 57134669 57134807 -66941365 + ID_B1 SINE B4 16 217 -7 2 1020 180 0 0 0 chr9 57134809 57134829 -66941343 + (CCA)n Simple_repeat Simple_repeat 3 22 0 2 1020 366 23 0 0 chr9 57134914 57134957 -66941215 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1020 369 0 0 0 chr9 57134957 57134997 -66941175 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1020 29 0 0 0 chr9 57135032 57135061 -66941111 + AT_rich Low_complexity Low_complexity 1 29 0 2 1020 1507 247 92 99 chr9 57135773 57136371 -66939801 - MT2B LTR ERVL -7 594 1 2 1020 302 252 64 80 chr9 57136379 57136504 -66939668 + MIRb SINE MIR 88 210 -58 2 1020 281 256 39 0 chr9 57136566 57136644 -66939528 + PB1D7 SINE Alu 1 81 -39 2 1020 1542 144 54 108 chr9 57136672 57137029 -66939143 + ORR1B1-int LTR MaLR 791 1127 -382 2 1020 378 130 0 0 chr9 57136995 57137049 -66939123 + RLTR20D LTR ERVK 515 568 0 2 1020 352 312 8 92 chr9 57137049 57137169 -66939003 + RSINE1 SINE B4 25 134 -31 2 1020 483 18 0 0 chr9 57137170 57137226 -66938946 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1020 276 276 0 0 chr9 57137244 57137302 -66938870 + tRNA-Ala-GCY_ tRNA tRNA 1 58 -17 2 1020 225 94 0 0 chr9 57137311 57137343 -66938829 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1020 4386 97 73 2 chr9 57137540 57138173 -66937999 + RLTR33 LTR ERVK 1 678 0 2 1020 189 147 0 0 chr9 57138174 57138208 -66937964 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 2 1020 234 342 0 71 chr9 57138398 57138483 -66937689 + PB1D7 SINE Alu 35 113 -7 2 1020 664 242 16 0 chr9 57138488 57138612 -66937560 + RSINE1 SINE B4 2 127 -38 2 1020 378 0 0 0 chr9 57138622 57138664 -66937508 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1020 500 276 126 15 chr9 57138695 57138894 -66937278 + Lx8 LINE L1 7038 7258 -215 2 1020 767 220 6 51 chr9 57138971 57139170 -66937002 + MT2B LTR ERVL 1 176 -357 2 1020 686 207 8 0 chr9 57139333 57139454 -66936718 - B1_Mur2 SINE Alu -27 122 1 2 1020 24 0 0 0 chr9 57139456 57139480 -66936692 + AT_rich Low_complexity Low_complexity 1 24 0 2 1020 2488 116 21 10 chr9 57139501 57139884 -66936288 - RMER6A LTR ERVK 0 756 370 2 1020 898 105 0 0 chr9 57139884 57140008 -66936164 + ORR1A2 LTR MaLR 1 124 -203 2 1020 240 289 67 108 chr9 57140437 57140631 -66935541 + RLTR41 LTR ERV1 199 384 -62 2 1020 1246 109 117 6 chr9 57140655 57140868 -66935304 + ORR1A3 LTR MaLR 122 374 0 2 1020 2055 121 60 43 chr9 57140868 57141236 -66934936 - RMER6A LTR ERVK -382 374 1 2 1020 802 225 70 12 chr9 57141236 57141398 -66934774 - B3 SINE B2 -41 175 4 2 1020 441 229 73 0 chr9 57141409 57141518 -66934654 - PB1 SINE Alu 0 127 11 2 1020 533 338 100 56 chr9 57141548 57142009 -66934163 - MER21B LTR ERV1 -285 578 98 2 1020 26 50 0 0 chr9 57142131 57142171 -66934001 + AT_rich Low_complexity Low_complexity 1 40 0 2 1020 199 275 101 84 chr9 57142434 57142553 -66933619 - MIR SINE MIR -71 137 17 2 1020 321 167 200 0 chr9 57143113 57143203 -66932969 - MER34A1 LTR ERV1 -454 133 26 2 1020 183 238 71 0 chr9 57143352 57143394 -66932778 - L4 LINE RTE -826 1203 1159 2 1020 380 266 0 0 chr9 57143696 57143775 -66932397 + MLT1A1 LTR MaLR 3 81 -327 2 1020 426 259 101 84 chr9 57144308 57144616 -66931556 + RMER10A LTR ERVL 123 435 -7 2 1020 273 215 116 116 chr9 57145510 57145631 -66930541 + ID_B1 SINE B4 78 198 -26 2 1020 207 0 0 0 chr9 57145632 57145655 -66930517 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1020 180 333 0 16 chr9 57146659 57146723 -66929449 + L3 LINE CR1 4337 4399 -90 2 1020 1250 48 0 0 chr9 57146894 57147039 -66929133 + B1_Mus1 SINE Alu 2 146 -2 3 1020 186 133 0 0 chr9 57147049 57147079 -66929093 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1021 217 171 24 0 chr9 57147552 57147593 -66928579 + CT-rich Low_complexity Low_complexity 1 42 0 3 1021 587 250 106 27 chr9 57147641 57147968 -66928204 + MER54A LTR ERVL 127 427 -474 3 1021 812 192 137 31 chr9 57147998 57148183 -66927989 + MTC LTR MaLR 1 209 -212 3 1021 546 275 91 0 chr9 57148183 57148358 -66927814 + B3 SINE B2 1 192 -6 3 1021 682 251 85 11 chr9 57148345 57148522 -66927650 + MTD LTR MaLR 194 383 -36 3 1021 2304 104 28 0 chr9 57148834 57149152 -66927020 + ORR1A2 LTR MaLR 1 327 0 3 1021 489 102 57 16 chr9 57149152 57149244 -66926928 + ORR1A2-int LTR MaLR 1 96 -1162 3 1021 728 231 7 20 chr9 57149454 57149604 -66926568 - B1_Mur3 SINE Alu 0 149 2 3 1021 498 33 0 0 chr9 57149721 57149781 -66926391 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1021 2144 130 145 64 chr9 57149799 57150269 -66925903 - RLTR28 LTR ERVL -14 510 3 3 1021 180 0 0 0 chr9 57151012 57151032 -66925140 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1021 355 289 145 24 chr9 57151036 57151160 -66925012 - B1F1 SINE Alu -8 141 3 3 1021 294 73 0 0 chr9 57151301 57151342 -66924830 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1021 228 278 42 0 chr9 57151794 57151866 -66924306 - MT2B2 LTR ERVL -319 265 191 3 1021 248 329 118 47 chr9 57151918 57152087 -66924085 + RMER15 LTR ERVL 233 413 -162 3 1021 1657 89 57 0 chr9 57152116 57152362 -66923810 + Lx2B LINE L1 6629 6888 -112 3 1021 1558 56 0 15 chr9 57152449 57152649 -66923523 + ORR1A1 LTR MaLR 1 197 -149 3 1021 1389 212 95 29 chr9 57152649 57153135 -66923037 + RLTR1 LTR ERV1 1 624 0 3 1021 1202 74 31 0 chr9 57153135 57153284 -66922888 + ORR1A1 LTR MaLR 193 346 0 3 1021 3595 25 0 0 chr9 57153289 57153685 -66922487 - MTA_Mm LTR MaLR 0 396 1 3 1021 9210 40 3 1 chr9 57153685 57154781 -66921391 - MTA_Mm-int LTR MaLR 0 1098 1 3 1021 3566 28 0 0 chr9 57154781 57155177 -66920995 - MTA_Mm LTR MaLR 0 396 1 3 1021 220 305 0 0 chr9 57155728 57155787 -66920385 - PB1D10 SINE Alu -1 116 58 3 1021 214 246 152 15 chr9 57155790 57155856 -66920316 + B2_Mm1t SINE B2 3 77 -116 3 1021 1053 111 81 11 chr9 57156026 57156200 -66919972 - B2_Mm2 SINE B2 -8 187 2 3 1021 693 247 140 0 chr9 57156237 57156415 -66919757 - ID_B1 SINE B4 -7 217 15 3 1021 207 0 0 0 chr9 57156724 57156747 -66919425 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1021 1082 89 0 0 chr9 57156748 57156883 -66919289 - B1_Mus2 SINE Alu -12 135 1 3 1021 449 277 100 0 chr9 57156892 57157022 -66919150 - B1F SINE Alu -6 143 1 3 1021 421 219 259 0 chr9 57157114 57157256 -66918916 + MER34A LTR ERV1 229 407 -164 3 1021 251 271 43 0 chr9 57157312 57157382 -66918790 - ID4 SINE ID -1 82 10 3 1021 269 237 38 38 chr9 57157406 57157485 -66918687 - PB1D10 SINE Alu -1 116 38 3 1021 340 253 102 102 chr9 57157491 57157707 -66918465 + Charlie1a DNA MER1_type 889 1104 -351 3 1021 430 263 8 58 chr9 57157713 57157834 -66918338 + PB1D10 SINE Alu 2 116 -1 3 1021 243 206 36 126 chr9 57157853 57157964 -66918208 + Charlie1a DNA MER1_type 1091 1191 -264 3 1021 200 226 16 16 chr9 57157990 57158030 -66918142 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 1021 1160 97 86 0 chr9 57158030 57158205 -66917967 - B2_Mm1t SINE B2 -2 191 2 3 1021 200 226 16 16 chr9 57158205 57158227 -66917945 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1021 510 17 0 0 chr9 57158259 57158318 -66917854 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 3 1021 1457 65 5 11 chr9 57158318 57158497 -66917675 - B2_Mm1a SINE B2 -14 179 1 3 1021 1626 141 64 133 chr9 57158511 57158637 -66917535 - RLTR9D LTR ERVK -41 362 254 3 1021 1064 62 0 0 chr9 57158637 57158767 -66917405 + B1_Mm SINE Alu 1 130 -17 3 1021 1626 141 64 133 chr9 57158767 57159016 -66917156 - RLTR9D LTR ERVK -150 253 13 3 1021 508 200 0 45 chr9 57159007 57159096 -66917076 - B1_Mus1 SINE Alu -63 85 1 3 1021 876 162 7 0 chr9 57159124 57159260 -66916912 - B1_Mur1 SINE Alu -3 146 10 3 1021 32 67 0 0 chr9 57159276 57159336 -66916836 + AT_rich Low_complexity Low_complexity 1 60 0 3 1021 257 312 78 0 chr9 57159355 57159432 -66916740 - RSINE1 SINE B4 -6 159 77 3 1021 514 324 20 33 chr9 57159428 57159578 -66916594 - RSINE1 SINE B4 -10 155 8 3 1021 290 171 11 165 chr9 57159616 57159707 -66916465 + MTEa LTR MaLR 244 320 -59 3 1021 515 276 37 7 chr9 57159712 57159847 -66916325 + ID_B1 SINE B4 86 224 0 3 1021 359 218 35 7 chr9 57160044 57160141 -66916031 - PB1D10 SINE Alu -9 108 11 3 1021 1252 112 37 0 chr9 57160177 57160364 -66915808 - B2_Mm2 SINE B2 0 195 2 3 1021 247 253 139 0 chr9 57160368 57160447 -66915725 - L1M5 LINE L1 -342 5782 5693 3 1021 443 274 113 27 chr9 57160721 57160871 -66915301 + RSINE1 SINE B4 2 164 -1 3 1021 493 250 15 65 chr9 57160924 57161110 -66915062 + B1F2 SINE Alu 1 148 -1 3 1021 366 80 0 0 chr9 57161110 57161160 -66915012 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 3 1021 290 324 38 29 chr9 57161320 57161331 -66914841 + B4A SINE B4 74 120 -172 3 1021 366 185 24 24 chr9 57161331 57161414 -66914758 + PB1D10 SINE Alu 1 83 -34 3 1021 290 324 38 29 chr9 57161414 57161425 -66914747 + B4A SINE B4 121 179 -113 3 1021 1634 249 70 8 chr9 57161453 57161952 -66914220 + L1MB2 LINE L1 5600 6129 -42 3 1021 413 254 0 192 chr9 57161954 57162051 -66914121 + B4A SINE B4 2 96 -196 3 1021 1161 55 14 0 chr9 57162051 57162196 -66913976 + B1_Mus2 SINE Alu 1 147 0 3 1021 413 254 0 192 chr9 57162196 57162254 -66913918 + B4A SINE B4 97 127 -165 3 1021 447 35 0 0 chr9 57162255 57162312 -66913860 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1021 437 208 292 0 chr9 57162316 57162436 -66913736 + RSINE1 SINE B4 11 165 0 3 1021 270 326 44 44 chr9 57162464 57162554 -66913618 + PB1D10 SINE Alu 1 90 -27 3 1021 706 197 73 0 chr9 57162774 57162911 -66913261 - B3A SINE B2 -51 147 1 3 1021 341 313 40 0 chr9 57162950 57163049 -66913123 - PB1D7 SINE Alu -6 114 12 3 1021 2440 161 39 7 chr9 57163049 57163457 -66912715 + MTC LTR MaLR 1 421 0 3 1021 2941 57 217 9 chr9 57163511 57163935 -66912237 + RLTR1B LTR ERV1 1 512 0 3 1021 838 130 0 8 chr9 57164296 57164420 -66911752 + B1_Mur4 SINE Alu 10 132 -18 3 1021 1367 217 243 22 chr9 57165867 57166328 -66909844 + RMER15 LTR ERVL 10 572 -3 3 1021 2252 136 2 96 chr9 57166329 57166768 -66909404 - RMER10B LTR ERVL 0 398 1 3 1021 270 254 143 0 chr9 57166932 57166994 -66909178 + B3 SINE B2 122 192 -24 3 1021 4346 74 2 28 chr9 57166994 57167253 -66908919 + RLTR19B LTR ERVK 1 257 -458 3 1021 1406 71 11 0 chr9 57167253 57167435 -66908737 + B2_Mm1a SINE B2 2 185 -8 3 1021 4067 74 2 28 chr9 57167435 57167774 -66908398 + RLTR19B LTR ERVK 258 583 -132 3 1021 238 256 46 12 chr9 57167799 57167899 -66908273 + L1M4b LINE L1 1467 1613 -5291 3 1021 1530 62 0 10 chr9 57167971 57168166 -66908006 + B2_Mm2 SINE B2 2 194 -1 3 1021 1209 41 7 0 chr9 57168312 57168458 -66907714 + B1_Mus2 SINE Alu 1 147 0 3 1021 1666 62 4 32 chr9 57168491 57168690 -66907482 + MT2B2 LTR ERVL 10 208 -376 3 1021 2574 119 76 35 chr9 57168690 57169153 -66907019 - RLTR45 LTR ERVK 0 482 1 3 1021 1666 62 4 32 chr9 57169153 57169201 -66906971 + MT2B2 LTR ERVL 209 250 -334 3 1021 517 244 192 63 chr9 57169164 57169466 -66906706 - RLTR9A LTR ERVK -27 341 1 3 1021 2501 60 0 12 chr9 57169466 57169806 -66906366 + MT2B2 LTR ERVL 249 584 0 3 1021 483 221 11 0 chr9 57169842 57169937 -66906235 + B1_Mur2 SINE Alu 2 97 -52 3 1021 422 297 45 11 chr9 57169937 57170114 -66906058 - RLTR41 LTR ERV1 0 446 264 3 1021 648 238 28 51 chr9 57170434 57170611 -66905561 + B3 SINE B2 42 214 -2 3 1021 241 321 82 9 chr9 57170682 57170792 -66905380 - PB1D7 SINE Alu 0 120 3 3 1021 301 300 7 171 chr9 57170801 57170871 -66905301 - L1MB3 LINE L1 -61 6122 6067 3 1021 788 203 21 0 chr9 57170871 57171014 -66905158 - B1_Mur2 SINE Alu -1 148 3 3 1021 301 300 7 171 chr9 57171014 57171056 -66905116 - L1MB3 LINE L1 -117 6066 6034 3 1021 2336 78 0 50 chr9 57171056 57171395 -66904777 - RLTRETN_Mm LTR ERVK 0 322 1 3 1021 301 300 7 171 chr9 57171395 57171473 -66904699 - L1MB3 LINE L1 -150 6033 5967 3 1021 831 215 129 0 chr9 57171473 57171659 -66904513 - B3 SINE B2 -6 210 1 3 1021 301 300 7 171 chr9 57171659 57171747 -66904425 - L1MB3 LINE L1 -217 5966 5889 3 1021 1249 83 48 27 chr9 57171768 57171954 -66904218 + B2_Mm2 SINE B2 1 190 -5 3 1021 562 246 30 0 chr9 57171954 57172088 -66904084 + L1M4b LINE L1 5729 5866 -1140 3 1021 1703 135 175 47 chr9 57172162 57172567 -66903605 - RMER20A LTR ERVK 0 516 60 3 1021 407 234 71 28 chr9 57172832 57172973 -66903199 + RLTR41 LTR ERV1 300 446 0 3 1021 628 269 18 42 chr9 57172977 57173144 -66903028 - B3A SINE B2 -35 163 1 3 1021 391 294 7 68 chr9 57173166 57173312 -66902860 - B3 SINE B2 0 216 80 3 1021 290 235 41 32 chr9 57173375 57173498 -66902674 + L1M4b LINE L1 5919 6042 -964 3 1021 466 280 16 31 chr9 57173498 57173627 -66902545 + ID_B1 SINE B4 72 198 -26 3 1021 309 156 19 19 chr9 57174059 57174127 -66902045 - MLT1C LTR MaLR -14 453 320 3 1021 2473 98 0 18 chr9 57174134 57174467 -66901705 + ORR1A2 LTR MaLR 1 327 0 3 1021 325 191 89 106 chr9 57174673 57174796 -66901376 - B2_Mm2 SINE B2 -74 121 1 3 1021 213 156 44 0 chr9 57174826 57174871 -66901301 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1021 1173 185 184 22 chr9 57174946 57175383 -66900789 + RMER15 LTR ERVL 27 560 -15 3 1021 270 224 0 0 chr9 57175413 57175462 -66900710 - RSINE1 SINE B4 -38 127 79 3 1021 1790 156 21 34 chr9 57175463 57175789 -66900383 - MTC LTR MaLR 0 421 100 3 1021 21 0 0 0 chr9 57176281 57176302 -66899870 + AT_rich Low_complexity Low_complexity 1 21 0 3 1021 225 0 0 0 chr9 57177122 57177147 -66899025 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1021 427 225 3 64 chr9 57177410 57177460 -66898712 - MTC LTR MaLR -297 122 78 3 1021 2448 69 25 0 chr9 57177460 57177779 -66898393 - ORR1A2 LTR MaLR 0 327 1 4 1021 427 186 0 65 chr9 57177779 57177839 -66898333 - MTC LTR MaLR -344 77 18 3 1021 298 303 0 26 chr9 57177841 57177919 -66898253 - RSINE1 SINE B4 -89 76 1 3 1021 1160 190 65 3 chr9 57178010 57178301 -66897871 + RMER12 LTR ERVK 659 967 -355 4 1021 335 322 50 0 chr9 57178294 57178415 -66897757 + RMER20A LTR ERVK 390 516 0 4 1021 1755 246 82 68 chr9 57178546 57178930 -66897242 + RMER1A Other Other 1 455 -611 4 1021 1605 227 56 160 chr9 57178930 57179501 -66896671 - RMER19C LTR ERVK 0 611 129 4 1021 477 0 0 0 chr9 57179501 57179554 -66896618 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1021 1605 227 56 160 chr9 57179554 57179664 -66896508 - RMER19C LTR ERVK -483 128 1 4 1021 3079 198 89 22 chr9 57179664 57180314 -66895858 + RMER1B Other Other 1 718 -348 4 1021 2038 184 82 106 chr9 57180314 57180612 -66895560 + RMER16 LTR ERVK 1 255 -278 4 1021 1376 83 5 16 chr9 57180612 57180796 -66895376 - B2_Mm1t SINE B2 -9 184 3 4 1021 2038 184 82 106 chr9 57180796 57181043 -66895129 + RMER16 LTR ERVK 256 533 0 4 1021 3079 181 16 16 chr9 57181043 57181197 -66894975 + RMER1B Other Other 719 869 -197 4 1021 2068 82 3 50 chr9 57181197 57181518 -66894654 + ORR1A2 LTR MaLR 14 319 -8 4 1021 823 181 100 0 chr9 57181523 57181683 -66894489 + RMER1B Other Other 880 1055 -11 4 1021 342 211 0 0 chr9 57181731 57181802 -66894370 - MT2A LTR ERVL -445 88 18 4 1021 332 148 0 0 chr9 57181823 57181877 -66894295 + RLTR14 LTR ERV1 3 56 -326 4 1021 198 0 0 0 chr9 57182601 57182623 -66893549 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1021 1501 182 11 0 chr9 57182623 57182908 -66893264 + RLTR14 LTR ERV1 44 331 -51 4 1021 289 331 64 14 chr9 57182984 57183125 -66893047 - B1F2 SINE Alu -1 148 1 4 1021 413 306 24 0 chr9 57183002 57183126 -66893046 - ID_B1 SINE B4 -17 207 81 4 1021 321 280 46 9 chr9 57183154 57183262 -66892910 + PB1D10 SINE Alu 2 113 -4 4 1021 343 301 145 46 chr9 57183314 57183617 -66892555 + HAL1 LINE L1 1432 1764 -743 4 1021 1207 162 104 194 chr9 57183678 57184091 -66892081 + ORR1C1 LTR MaLR 1 376 -2 4 1021 326 269 16 122 chr9 57184091 57184214 -66891958 + PB1D7 SINE Alu 10 119 -1 4 1021 610 247 17 17 chr9 57184220 57184401 -66891771 + B3A SINE B2 3 183 -15 4 1021 683 254 87 16 chr9 57184427 57184611 -66891561 + B3 SINE B2 2 198 -18 4 1021 704 103 324 20 chr9 57184620 57184768 -66891404 - B2_Mm2 SINE B2 0 195 3 4 1021 301 140 0 0 chr9 57184769 57184819 -66891353 + MTB_Mm LTR MaLR 2 51 -356 4 1021 4820 143 99 6 chr9 57185235 57186060 -66890112 + RMER19B LTR ERVK 1 902 0 4 1021 279 0 0 0 chr9 57186105 57186136 -66890036 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1021 2046 156 62 3 chr9 57186252 57186605 -66889567 + ORR1D1 LTR MaLR 1 374 0 4 1021 331 262 9 27 chr9 57188182 57188292 -66887880 - PB1D10 SINE Alu -9 108 1 4 1021 378 270 129 61 chr9 57188340 57188541 -66887631 - Looper DNA PiggyBac -802 756 531 4 1021 369 0 0 0 chr9 57188541 57188582 -66887590 + (TTA)n Simple_repeat Simple_repeat 3 43 0 4 1021 1250 48 0 0 chr9 57188583 57188730 -66887442 - B1_Mus2 SINE Alu 0 147 1 4 1021 378 270 129 61 chr9 57188730 57188821 -66887351 - Looper DNA PiggyBac -1028 530 439 4 1021 219 88 0 0 chr9 57188821 57188855 -66887317 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 4 1021 378 270 129 61 chr9 57188855 57188910 -66887262 - Looper DNA PiggyBac -1120 438 382 4 1021 1305 91 0 33 chr9 57188910 57189092 -66887080 - B2_Mm2 SINE B2 -19 176 1 4 1021 378 270 129 61 chr9 57189092 57189135 -66887037 - Looper DNA PiggyBac -1177 381 338 4 1021 1221 55 0 0 chr9 57189150 57189296 -66886876 - B1_Mus2 SINE Alu 0 147 2 4 1021 1931 158 77 28 chr9 57189331 57189760 -66886412 + RMER4A LTR ERVK 17 466 0 4 1021 215 264 172 21 chr9 57190384 57190477 -66885695 + MIR SINE MIR 14 120 -142 4 1021 595 265 0 0 chr9 57191274 57191406 -66884766 + B1_Mur1 SINE Alu 5 136 -13 4 1021 1195 49 0 0 chr9 57191441 57191584 -66884588 + B1_Mus1 SINE Alu 1 143 -5 4 1021 210 71 0 0 chr9 57191681 57191709 -66884463 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 4 1021 512 330 97 26 chr9 57191977 57192245 -66883927 + B4A SINE B4 4 290 -2 4 1021 342 0 0 0 chr9 57192261 57192299 -66883873 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1021 321 26 0 0 chr9 57192299 57192336 -66883836 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1021 260 268 0 0 chr9 57192379 57192435 -66883737 - B1_Mus2 SINE Alu -91 56 1 4 1021 319 76 358 9 chr9 57192441 57192550 -66883622 - B2_Mm2 SINE B2 -2 193 47 4 1021 1241 112 6 22 chr9 57192596 57192779 -66883393 - B2_Mm1t SINE B2 -13 180 1 4 1021 301 271 73 18 chr9 57192807 57192916 -66883256 + PB1D10 SINE Alu 1 115 -2 4 1021 2340 152 59 11 chr9 57192945 57193482 -66882690 + RMER4B LTR ERVK 1 585 0 4 1021 6664 192 79 94 chr9 57193482 57194245 -66881927 + MurERV4-int LTR ERVK 1 702 -4558 4 1021 3102 23 0 0 chr9 57194245 57194591 -66881581 + ORR1A0 LTR MaLR 1 346 0 4 1021 14552 49 5 3 chr9 57194591 57196379 -66879793 + ORR1A0-int LTR MaLR 1 1792 0 4 1021 3117 20 0 0 chr9 57196379 57196725 -66879447 + ORR1A0 LTR MaLR 1 346 0 4 1021 6664 192 79 94 chr9 57196725 57197192 -66878980 + MurERV4-int LTR ERVK 703 1150 -4110 4 1021 297 0 0 0 chr9 57197192 57197225 -66878947 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1021 6664 192 79 94 chr9 57197225 57197753 -66878419 + MurERV4-int LTR ERVK 1151 1733 -3527 4 1021 1759 158 67 0 chr9 57197753 57198051 -66878121 + MurERV4-int LTR ERVK 4943 5260 0 4 1021 2162 134 307 7 chr9 57198051 57198228 -66877944 + RMER4B LTR ERVK 1 221 -364 4 1021 405 0 0 0 chr9 57198228 57198273 -66877899 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1021 2162 134 307 7 chr9 57198273 57198545 -66877627 + RMER4B LTR ERVK 222 585 0 4 1021 316 224 47 0 chr9 57198551 57198636 -66877536 + MER2 DNA MER2_type 78 166 -179 4 1021 307 234 84 11 chr9 57199090 57199185 -66876987 + MER2 DNA MER2_type 161 262 -83 4 1021 328 259 36 24 chr9 57199284 57199367 -66876805 + B3 SINE B2 121 204 -12 4 1021 1971 132 12 0 chr9 57199515 57199834 -66876338 - ORR1A4 LTR MaLR -6 323 1 4 1021 2656 129 72 28 chr9 57199834 57200559 -66875613 - ORR1A4-int LTR MaLR -191 1772 1002 4 1021 708 227 101 69 chr9 57200794 57200832 -66875340 + MTEa LTR MaLR 3 39 -340 4 1021 3024 101 26 45 chr9 57200832 57201254 -66874918 + Lx LINE L1 6158 6578 -76 4 1021 2911 49 3 0 chr9 57201254 57201599 -66874573 + ORR1A1 LTR MaLR 1 346 0 4 1021 3024 101 26 45 chr9 57201599 57201683 -66874489 + Lx LINE L1 6579 6654 0 4 1021 708 227 101 69 chr9 57201683 57201859 -66874313 + MTEa LTR MaLR 40 224 -155 4 1021 600 297 39 27 chr9 57201859 57202115 -66874057 - RMER20B LTR ERVK -1 515 257 4 1021 1473 161 118 43 chr9 57202115 57202519 -66873653 - RMER16 LTR ERVK 0 533 1 4 1021 687 284 26 5 chr9 57202519 57202714 -66873458 - RMER20B LTR ERVK -369 258 60 4 1021 985 189 161 28 chr9 57202763 57202910 -66873262 - MTC LTR MaLR -130 291 128 4 1021 1684 166 65 3 chr9 57202910 57203219 -66872953 - ORR1A4 LTR MaLR 0 329 2 4 1021 985 189 161 28 chr9 57203219 57203326 -66872846 - MTC LTR MaLR -294 127 3 4 1021 438 240 23 60 chr9 57203332 57203465 -66872707 + MTEa LTR MaLR 251 378 -1 4 1021 1446 272 48 27 chr9 57203468 57203906 -66872266 + MTEa-int LTR MaLR 5 451 -1129 4 1021 894 241 47 70 chr9 57203914 57204114 -66872058 + MTEa-int LTR MaLR 1060 1251 -329 4 1021 3293 134 146 7 chr9 57204114 57204716 -66871456 - RMER6C LTR ERVK -4 686 1 4 1021 894 241 47 70 chr9 57204716 57204814 -66871358 + MTEa-int LTR MaLR 1252 1351 -229 4 1021 1111 89 14 0 chr9 57204815 57204961 -66871211 - B1_Mus1 SINE Alu 0 148 1 4 1021 479 31 0 30 chr9 57204962 57205028 -66871144 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 4 1021 1136 215 14 0 chr9 57205144 57205353 -66870819 - B3 SINE B2 0 216 5 4 1021 835 189 7 26 chr9 57205425 57205577 -66870595 + B1_Mur1 SINE Alu 1 149 0 4 1021 1102 263 58 22 chr9 57205607 57205972 -66870200 + MTEb LTR MaLR 2 379 0 4 1021 2223 141 41 3 chr9 57206328 57206692 -66869480 - RLTR30 LTR ERV1 0 379 2 4 1021 718 255 0 19 chr9 57206893 57207053 -66869119 - RSINE1 SINE B4 -6 159 3 4 1021 542 240 104 0 chr9 57207277 57207402 -66868770 - ID_B1 SINE B4 -5 219 82 4 1021 306 215 0 12 chr9 57207409 57207489 -66868683 - HAL1-2a_MD LINE L1 -520 2504 2426 4 1021 568 285 56 0 chr9 57207489 57207668 -66868504 - B3 SINE B2 0 216 28 4 1021 693 118 0 0 chr9 57208092 57208202 -66867970 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 1021 458 274 0 45 chr9 57208207 57208341 -66867831 - B1F2 SINE Alu -6 143 16 4 1021 1626 150 18 68 chr9 57208881 57209217 -66866955 + ORR1A4 LTR MaLR 1 319 -10 4 1021 1749 159 62 6 chr9 57209213 57209549 -66866623 + ORR1C1 LTR MaLR 24 378 0 4 1021 1165 190 224 115 chr9 57210077 57210493 -66865679 - RMER6B LTR ERVK 0 461 1 4 1021 506 231 51 29 chr9 57211074 57211212 -66864960 + B1F SINE Alu 4 144 -5 4 1021 432 216 43 6 chr9 57211279 57211425 -66864747 + (CA)n Simple_repeat Simple_repeat 1 151 0 4 1021 2265 69 25 109 chr9 57211425 57211782 -66864390 - ORR1A2 LTR MaLR 0 327 1 4 1021 432 188 41 12 chr9 57211782 57211877 -66864295 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1021 267 161 80 12 chr9 57211894 57212057 -66864115 + (CA)n Simple_repeat Simple_repeat 2 175 0 4 1021 207 115 62 37 chr9 57212075 57212156 -66864016 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 1021 1159 62 7 0 chr9 57212160 57212305 -66863867 + B1_Mus2 SINE Alu 2 147 0 4 1021 203 183 27 40 chr9 57212314 57212388 -66863784 + (CACAA)n Simple_repeat Simple_repeat 2 74 0 4 1021 267 31 0 0 chr9 57212388 57212420 -66863752 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1021 378 0 0 0 chr9 57212420 57212461 -66863711 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1021 232 279 44 0 chr9 57212494 57212562 -66863610 - ID_B1 SINE B4 -31 193 123 4 1021 614 230 99 20 chr9 57212597 57212748 -66863424 - RSINE1 SINE B4 0 165 3 4 1021 384 297 25 0 chr9 57212749 57212867 -66863305 - B1F SINE Alu -7 142 22 4 1021 615 233 23 52 chr9 57212902 57213074 -66863098 - B3 SINE B2 -4 212 46 4 1021 826 206 50 40 chr9 57213104 57213306 -66862866 + Lx9 LINE L1 7064 7267 -377 4 1021 393 226 11 0 chr9 57213307 57213400 -66862772 - B4A SINE B4 -197 95 2 4 1021 334 292 107 16 chr9 57213401 57213523 -66862649 - B1F1 SINE Alu -1 148 16 4 1021 970 267 95 8 chr9 57213638 57213997 -66862175 + MLT1A1 LTR MaLR 8 397 -11 4 1021 4228 66 9 9 chr9 57214007 57214556 -66861616 + L1_Mus3 LINE L1 6084 6632 -6 4 1021 28 0 0 0 chr9 57214556 57214584 -66861588 + AT_rich Low_complexity Low_complexity 1 28 0 4 1021 579 53 0 0 chr9 57214642 57214717 -66861455 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1021 328 258 0 73 chr9 57214719 57214815 -66861357 - PB1D7 SINE Alu -30 90 2 4 1021 453 186 157 0 chr9 57214838 57214940 -66861232 - B1_Mur2 SINE Alu -2 147 30 4 1021 2905 246 67 33 chr9 57215260 57215741 -66860431 - Lx8 LINE L1 -322 7151 6672 4 1021 3347 30 76 7 chr9 57215741 57216149 -66860023 + RLTR10C LTR ERVK 1 436 0 4 1021 2905 246 67 33 chr9 57216149 57216476 -66859696 - Lx8 LINE L1 -802 6671 6316 4 1021 361 214 0 0 chr9 57216525 57216595 -66859577 - ID4_ SINE ID -9 74 5 4 1021 2946 118 26 20 chr9 57216705 57217162 -66859010 + Lx4A LINE L1 6598 7057 -1 4 1021 252 0 0 0 chr9 57217163 57217191 -66858981 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 5 1021 662 150 44 9 chr9 57217243 57217357 -66858815 + B1_Mur4 SINE Alu 1 118 -32 5 1021 14337 263 16 25 chr9 57217361 57221259 -66854913 + IAP-d-int LTR ERVK 36 3898 -2644 5 1021 668 226 79 83 chr9 57221274 57221564 -66854608 - RLTR12B LTR ERVK -198 330 42 5 1021 18681 208 74 64 chr9 57221594 57224845 -66851327 - MYSERV-int LTR ERVK -56 8903 3256 5 1021 3432 28 8 0 chr9 57224845 57225238 -66850934 - MTA_Mm LTR MaLR 0 396 1 5 1021 18681 233 85 75 chr9 57225238 57228168 -66848004 - MYSERV-int LTR ERVK -3295 3255 298 5 1021 388 267 99 43 chr9 57228956 57229167 -66847005 - RLTR12B LTR ERVK -42 486 264 5 1021 242 283 134 76 chr9 57229167 57229324 -66846848 - RLTR12B LTR ERVK -214 314 149 5 1021 3486 112 33 0 chr9 57229354 57229837 -66846335 + RLTR19 LTR ERVK 1 499 0 5 1021 298 331 94 69 chr9 57230545 57230704 -66845468 + RSINE1 SINE B4 3 165 0 5 1021 347 349 47 8 chr9 57230763 57230890 -66845282 - ID_B1 SINE B4 -7 217 86 5 1021 319 355 35 21 chr9 57230882 57230927 -66845245 - B3 SINE B2 -1 215 168 5 1021 348 77 0 0 chr9 57230927 57230979 -66845193 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1021 357 291 6 4 chr9 57230979 57231074 -66845098 - B3A SINE B2 -49 167 73 5 1021 263 189 101 104 chr9 57231533 57231634 -66844538 - B3A SINE B2 -93 100 2 5 1021 413 162 38 0 chr9 57231765 57231845 -66844327 - B1F SINE Alu 0 149 67 5 1021 391 306 8 8 chr9 57231958 57232080 -66844092 - B1F SINE Alu -22 127 6 5 1021 344 290 98 38 chr9 57232084 57232267 -66843905 - L1MEc LINE L1 -5436 964 771 5 1021 679 254 53 44 chr9 57232283 57232489 -66843683 - B3 SINE B2 -4 212 5 5 1021 308 267 168 0 chr9 57232608 57232709 -66843463 - MTEb LTR MaLR 0 379 262 5 1021 1761 141 115 0 chr9 57232808 57233120 -66843052 - RMER15 LTR ERVL -1 574 227 5 1021 725 218 23 0 chr9 57233211 57233344 -66842828 - B3 SINE B2 -80 136 1 5 1021 874 270 9 0 chr9 57233511 57233733 -66842439 - ID_B1 SINE B4 0 224 1 5 1021 318 282 11 86 chr9 57233750 57233788 -66842384 - B1_Mur2 SINE Alu 0 149 112 5 1021 1305 167 269 29 chr9 57233788 57234096 -66842076 - ORR1C2 LTR MaLR 0 384 3 5 1021 318 282 11 86 chr9 57234096 57234150 -66842022 - B1_Mur2 SINE Alu -38 111 64 5 1021 422 308 15 37 chr9 57234135 57234270 -66841902 + B1F SINE Alu 13 144 -5 5 1021 930 232 64 44 chr9 57234438 57234641 -66841531 + B3 SINE B2 5 211 -5 5 1021 714 241 0 8 chr9 57234670 57234804 -66841368 + RSINE1 SINE B4 12 144 -21 5 1021 395 276 172 0 chr9 57234850 57234966 -66841206 - ID_B1 SINE B4 -9 215 80 5 1021 520 281 24 12 chr9 57234966 57235132 -66841040 - L1M5 LINE L1 -402 5762 5595 5 1021 308 193 0 0 chr9 57235211 57235268 -66840904 - ID4_ SINE ID -13 70 14 5 1021 414 284 0 27 chr9 57235332 57235444 -66840728 - PB1D10 SINE Alu -8 109 1 5 1021 884 164 7 7 chr9 57235463 57235610 -66840562 + B1_Mur4 SINE Alu 3 149 -1 5 1021 486 325 37 86 chr9 57235614 57235765 -66840407 - L1MC LINE L1 -886 5260 5120 5 1021 541 273 0 0 chr9 57235765 57235875 -66840297 - PB1D7 SINE Alu -7 113 4 5 1021 486 325 37 86 chr9 57235875 57236049 -66840123 - L1MC LINE L1 -1027 5119 4951 5 1021 265 392 13 25 chr9 57236144 57236301 -66839871 + B4 SINE B4 2 156 -136 5 1021 576 0 0 0 chr9 57236340 57236404 -66839768 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1021 301 288 36 8 chr9 57237229 57237330 -66838842 + B1F1 SINE Alu 15 116 -4 5 1021 234 283 0 0 chr9 57237337 57237390 -66838782 - tRNA-Ala-GCA tRNA tRNA -13 62 10 5 1021 658 197 173 0 chr9 57237429 57237556 -66838616 - B1_Mur4 SINE Alu 0 150 2 5 1021 1250 105 12 0 chr9 57237712 57237884 -66838288 + B2_Mm1t SINE B2 6 179 -14 5 1021 456 97 310 26 chr9 57237941 57238057 -66838115 + B2_Mm2 SINE B2 47 195 0 5 1021 791 214 295 8 chr9 57238063 57238200 -66837972 - ORR1C1 LTR MaLR -33 345 184 5 1021 567 0 0 0 chr9 57238200 57238263 -66837909 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1021 791 214 295 8 chr9 57238263 57238393 -66837779 - ORR1C1 LTR MaLR -195 183 1 5 1021 342 0 0 0 chr9 57238417 57238455 -66837717 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1021 279 0 0 0 chr9 57238455 57238485 -66837687 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1021 372 171 26 26 chr9 57238521 57238580 -66837592 - B1F1 SINE Alu -19 130 71 5 1021 3106 151 62 25 chr9 57238580 57239132 -66837040 - RMER15 LTR ERVL -3 572 1 5 1021 372 171 26 26 chr9 57239132 57239150 -66837022 - B1F1 SINE Alu -79 70 53 5 1021 316 270 0 91 chr9 57239254 57239364 -66836808 - PB1D10 SINE Alu -1 116 17 5 1021 827 239 164 75 chr9 57239424 57239808 -66836364 - RMER21B LTR ERV1 -275 567 150 5 1021 415 278 20 10 chr9 57239766 57239864 -66836308 + PB1D10 SINE Alu 14 112 -5 5 1021 878 177 7 0 chr9 57239871 57240018 -66836154 + B1_Mus1 SINE Alu 1 148 0 5 1021 322 265 0 78 chr9 57240036 57240126 -66836046 + ID4_ SINE ID 1 83 0 5 1021 21 0 0 0 chr9 57240266 57240287 -66835885 + AT_rich Low_complexity Low_complexity 1 21 0 5 1021 428 97 93 37 chr9 57240288 57240395 -66835777 + L1Md_F3 LINE L1 6472 6584 0 5 1021 482 214 37 73 chr9 57240472 57240608 -66835564 - RLTR23 LTR ERV1 0 430 300 5 1021 1461 261 20 18 chr9 57240628 57241018 -66835154 + RLTR22_Mur LTR ERVK 415 805 -1043 5 1021 347 319 8 17 chr9 57241084 57241202 -66834970 + RLTR22_Mur LTR ERVK 1591 1707 -141 5 1021 928 162 7 0 chr9 57241318 57241472 -66834700 + B3 SINE B2 61 215 -1 5 1021 316 290 181 55 chr9 57242243 57242493 -66833679 + B4 SINE B4 2 292 0 5 1021 351 196 6 45 chr9 57242495 57242671 -66833501 + (CA)n Simple_repeat Simple_repeat 2 170 0 5 1021 295 222 14 27 chr9 57242689 57242763 -66833409 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1021 360 186 22 50 chr9 57242765 57242946 -66833226 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 5 1021 317 232 12 47 chr9 57242961 57243047 -66833125 + HAL1-3A_ME LINE L1 1975 2057 -801 5 1021 1511 218 74 20 chr9 57243720 57244070 -66832102 - MTD LTR MaLR -2 417 49 5 1021 990 34 0 0 chr9 57244070 57244189 -66831983 + B1_Mm SINE Alu 4 122 -25 5 1021 288 229 0 16 chr9 57244186 57244248 -66831924 - MTD LTR MaLR -358 61 1 5 1021 486 70 0 0 chr9 57244301 57244372 -66831800 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1021 226 338 25 12 chr9 57244426 57244507 -66831665 + MIRb SINE MIR 95 176 -92 5 1021 477 308 92 111 chr9 57245234 57245451 -66830721 - RMER12 LTR ERVK -100 1222 1013 5 1021 741 79 0 0 chr9 57245451 57245552 -66830620 + (GAGAA)n Simple_repeat Simple_repeat 5 105 0 5 1021 1602 247 49 84 chr9 57245552 57246478 -66829694 - RMER12 LTR ERVK -310 1012 35 5 1021 2027 142 41 60 chr9 57246478 57246846 -66829326 - ORR1C2 LTR MaLR 0 384 24 5 1021 1250 54 0 0 chr9 57246879 57247027 -66829145 - B1_Mus1 SINE Alu 0 148 1 5 1021 237 185 0 36 chr9 57247288 57247337 -66828835 + RLTR43A LTR ERVK 256 303 -61 5 1021 564 15 0 0 chr9 57247337 57247402 -66828770 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 1021 1041 138 58 10 chr9 57247633 57247816 -66828356 + ORR1C2 LTR MaLR 218 419 0 5 1021 429 177 12 25 chr9 57248154 57248235 -66827937 - RLTR23 LTR ERV1 -23 407 328 5 1021 2003 193 15 13 chr9 57248290 57248684 -66827488 + RLTR22_Mur LTR ERVK 415 809 -1039 5 1021 229 227 288 0 chr9 57248757 57248823 -66827349 + RLTR22_Mus LTR ERVK 1542 1626 -182 5 1021 1183 118 5 65 chr9 57249175 57249375 -66826797 + B2_Mm2 SINE B2 2 189 -6 5 1021 298 211 51 38 chr9 57249585 57249664 -66826508 + MIRb SINE MIR 107 186 -82 5 1021 274 131 49 0 chr9 57251481 57251542 -66824630 + CT-rich Low_complexity Low_complexity 2 65 0 5 1021 243 208 0 0 chr9 57251557 57251605 -66824567 - ID_B1 SINE B4 0 224 177 5 1021 181 265 19 58 chr9 57251605 57251657 -66824515 + L2c LINE L2 3272 3321 -66 5 1021 1063 57 36 0 chr9 57251788 57251928 -66824244 - B1_Mur4 SINE Alu -5 145 1 5 1021 458 200 69 39 chr9 57251988 57252118 -66824054 - RLTR14 LTR ERV1 -50 332 199 5 1021 2157 164 122 9 chr9 57252145 57252588 -66823584 + MT2A LTR ERVL 1 493 -40 5 1021 228 289 0 0 chr9 57252588 57252640 -66823532 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1021 318 125 0 0 chr9 57252640 57252704 -66823468 + MT2A LTR ERVL 466 529 -4 5 1021 203 0 0 36 chr9 57252945 57252973 -66823199 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1021 772 115 82 0 chr9 57252975 57253097 -66823075 - B1_Mus2 SINE Alu -6 141 10 5 1021 502 243 101 27 chr9 57253324 57253366 -66822806 - MTD LTR MaLR -15 404 365 5 1021 213 39 0 0 chr9 57253366 57253392 -66822780 + (GGGGA)n Simple_repeat Simple_repeat 1 26 0 5 1021 502 248 101 26 chr9 57253392 57253511 -66822661 - MTD LTR MaLR -55 364 217 5 1021 462 293 113 26 chr9 57253674 57253825 -66822347 - RSINE1 SINE B4 0 165 2 5 1021 652 181 8 8 chr9 57253847 57253964 -66822208 - B1_Mm SINE Alu -30 117 1 5 1021 275 355 48 24 chr9 57253973 57253984 -66822188 - B1_Mus1 SINE Alu -20 128 76 5 1021 442 277 50 0 chr9 57253984 57254085 -66822087 - ID_B1 SINE B4 -28 196 91 5 1021 275 355 48 24 chr9 57254085 57254097 -66822075 - B1_Mus1 SINE Alu -20 75 2 5 1021 372 198 256 0 chr9 57254499 57254585 -66821587 + B3 SINE B2 1 108 -108 5 1021 654 170 0 9 chr9 57254868 57254975 -66821197 + PB1D10 SINE Alu 3 108 -9 5 1021 257 340 108 41 chr9 57255255 57255571 -66820601 - L2c LINE L2 -116 3259 2934 5 1021 6826 76 0 19 chr9 57255803 57256714 -66819458 - L1Md_Gf LINE L1 -5503 1019 126 5 1021 4138 41 0 0 chr9 57256714 57257198 -66818974 + L1Md_T LINE L1 6099 6582 0 5 1021 231 36 0 0 chr9 57257254 57257282 -66818890 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1021 406 238 95 0 chr9 57257497 57257602 -66818570 - PB1D9 SINE Alu -5 115 1 5 1021 591 161 16 74 chr9 57257616 57257737 -66818435 - PB1D9 SINE Alu -6 114 1 5 1021 2232 137 77 28 chr9 57257770 57258162 -66818010 + MTD LTR MaLR 1 411 -8 5 1021 242 338 0 0 chr9 57258504 57258575 -66817597 - B1F SINE Alu -12 137 67 6 1021 233 75 0 24 chr9 57258668 57258709 -66817463 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1021 659 288 7 0 chr9 57258730 57258883 -66817289 - RSINE1 SINE B4 -2 163 10 6 1021 258 158 0 0 chr9 57258951 57258989 -66817183 + RLTR13D3 LTR ERVK 1 38 -1076 6 1021 1087 63 28 0 chr9 57259366 57259509 -66816663 + B1_Mm SINE Alu 1 147 0 6 1021 186 43 0 0 chr9 57259512 57259535 -66816637 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1021 346 251 86 105 chr9 57259658 57259927 -66816245 + RLTR13C2 LTR ERVK 638 1072 -42 6 1021 684 299 151 47 chr9 57260512 57260857 -66815315 + Tigger7 DNA MER2_type 5 397 -2094 6 1021 733 214 7 0 chr9 57260857 57261002 -66815170 + B1_Mus2 SINE Alu 2 147 0 6 1021 684 299 151 47 chr9 57261002 57261060 -66815112 + Tigger7 DNA MER2_type 398 450 -2041 6 1021 605 287 0 113 chr9 57261098 57261283 -66814889 - RSINE1 SINE B4 0 165 2 6 1021 564 214 147 23 chr9 57261330 57261507 -66814665 + Tigger7 DNA MER2_type 2283 2481 -10 6 1021 198 265 143 12 chr9 57261513 57261597 -66814575 - MIRb SINE MIR -54 214 120 6 1021 555 226 120 0 chr9 57261977 57262110 -66814062 - B1F SINE Alu 0 149 1 6 1021 302 309 153 8 chr9 57262733 57262857 -66813315 - MIRb SINE MIR -36 232 91 6 1021 370 266 108 35 chr9 57263545 57263717 -66812455 - MIRb SINE MIR -38 230 43 6 1021 491 255 0 0 chr9 57263873 57263975 -66812197 + PB1D10 SINE Alu 2 103 -14 6 1021 1257 102 11 0 chr9 57264003 57264180 -66811992 + B2_Mm1t SINE B2 1 179 -14 6 1021 301 140 258 95 chr9 57264264 57264392 -66811780 + B2_Mm2 SINE B2 47 195 0 6 1021 672 228 27 14 chr9 57264393 57264540 -66811632 + B1_Mur1 SINE Alu 1 149 0 6 1021 398 282 72 8 chr9 57264598 57264723 -66811449 - ID_B1 SINE B4 -6 218 86 6 1021 225 245 80 20 chr9 57265860 57265949 -66810223 + B1F2 SINE Alu 1 96 -53 6 1021 1079 211 49 0 chr9 57265949 57266153 -66810019 - B3 SINE B2 -1 215 2 6 1021 420 250 43 16 chr9 57266635 57266761 -66809411 - PB1D10 SINE Alu -24 123 3 6 1021 332 303 2 4 chr9 57266843 57266937 -66809235 + B1F2 SINE Alu 1 93 -24 6 1021 189 0 0 0 chr9 57269996 57270017 -66806155 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 6 1021 1629 42 0 0 chr9 57270040 57270232 -66805940 - B2_Mm1t SINE B2 0 193 2 6 1021 1215 180 14 0 chr9 57270415 57270637 -66805535 + URR1B DNA MER1_type 1 225 0 6 1021 613 196 19 0 chr9 57270930 57271037 -66805135 + PB1D10 SINE Alu 1 109 -8 6 1021 906 214 31 36 chr9 57271043 57271266 -66804906 + ID_B1 SINE B4 1 222 -2 6 1021 221 147 0 0 chr9 57271309 57271343 -66804829 + ID4_ SINE ID 48 81 -2 6 1021 639 269 27 0 chr9 57271417 57271566 -66804606 + RSINE1 SINE B4 3 155 -10 6 1021 278 292 84 9 chr9 57271610 57271717 -66804455 + PB1D10 SINE Alu 1 115 -2 6 1021 233 292 42 0 chr9 57271726 57271798 -66804374 + ID4 SINE ID 5 79 -4 6 1021 814 234 63 19 chr9 57272446 57272651 -66803521 - B3 SINE B2 -2 214 1 6 1021 273 193 0 66 chr9 57272733 57272794 -66803378 + RMER1B Other Other 414 470 -596 6 1021 2879 185 137 16 chr9 57272795 57273425 -66802747 + RMER1B Other Other 361 1066 0 6 1021 612 239 0 0 chr9 57273437 57273567 -66802605 + B1_Mur1 SINE Alu 3 132 -17 6 1021 243 0 0 0 chr9 57273753 57273780 -66802392 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 6 1021 427 274 35 0 chr9 57273810 57273923 -66802249 + PB1D10 SINE Alu 1 117 0 6 1021 189 0 0 0 chr9 57273923 57273944 -66802228 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1021 710 236 132 0 chr9 57274382 57274564 -66801608 - ID_B1 SINE B4 -11 213 8 6 1021 629 243 75 101 chr9 57274741 57274914 -66801258 + B3A SINE B2 13 181 -14 6 1021 1251 48 0 0 chr9 57274914 57275061 -66801111 + B1_Mus2 SINE Alu 1 147 0 6 1021 472 243 75 101 chr9 57275061 57275075 -66801097 + B2_Mm2 SINE B2 182 195 0 6 1021 584 194 18 27 chr9 57275165 57275276 -66800896 - PB1D9 SINE Alu 0 120 11 6 1021 286 195 26 0 chr9 57276045 57276122 -66800050 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 1021 1589 202 48 28 chr9 57276912 57277269 -66798903 - ORR1D2 LTR MaLR 0 370 7 6 1021 555 291 55 42 chr9 57277421 57277568 -66798604 - B3A SINE B2 -31 167 13 6 1021 2908 139 18 86 chr9 57277568 57278136 -66798036 - RLTR24 LTR ERV1 0 529 1 6 1021 566 291 55 42 chr9 57278136 57278153 -66798019 - B3A SINE B2 -186 12 1 6 1021 984 205 56 0 chr9 57278157 57278352 -66797820 - ID_B1 SINE B4 -17 207 2 6 127 801 203 7 7 chr9 57278369 57278513 -66797659 - B1_Mur1 SINE Alu -2 147 4 6 1022 243 349 0 67 chr9 57278584 57278673 -66797499 + ID4 SINE ID 1 83 0 6 1022 290 246 46 0 chr9 57278681 57278746 -66797426 - MER58C DNA MER1_type -128 87 20 6 1022 384 291 0 57 chr9 57279989 57280113 -66796059 - PB1D10 SINE Alu 0 117 1 6 1022 671 286 21 26 chr9 57280113 57280194 -66795978 - ID SINE ID -143 81 2 6 1022 321 319 70 64 chr9 57283939 57284110 -66792062 + MIR3 SINE MIR 10 181 -27 6 1022 874 240 30 10 chr9 57284449 57284651 -66791521 - B3 SINE B2 -8 208 3 6 1022 454 247 96 106 chr9 57284840 57285039 -66791133 - B3A SINE B2 -1 197 1 6 1022 501 140 11 55 chr9 57285075 57285166 -66791006 - B1_Mur3 SINE Alu -1 148 62 6 1022 240 176 0 0 chr9 57285520 57285588 -66790584 + GA-rich Low_complexity Low_complexity 1 68 0 6 1022 519 246 93 0 chr9 57286612 57286730 -66789442 + B1_Mur2 SINE Alu 5 133 -16 6 1022 201 208 14 27 chr9 57286730 57286804 -66789368 + GA-rich Low_complexity Low_complexity 4 76 0 6 1022 428 225 132 8 chr9 57287414 57287535 -66788637 + RSINE1 SINE B4 8 143 -22 6 1022 22 0 0 0 chr9 57287559 57287581 -66788591 + AT_rich Low_complexity Low_complexity 1 22 0 6 1022 329 276 82 0 chr9 57288083 57288217 -66787955 - L1MEe LINE L1 -4041 813 669 6 1022 392 272 0 0 chr9 57288234 57288326 -66787846 - B1_Mm SINE Alu -51 96 5 6 1022 1969 127 15 71 chr9 57288557 57288897 -66787275 + ORR1A4 LTR MaLR 1 321 -8 6 1022 264 149 0 0 chr9 57291295 57291342 -66784830 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 6 1022 467 246 125 44 chr9 57291803 57291939 -66784233 + ID_B1 SINE B4 78 224 0 6 1022 946 111 27 27 chr9 57291945 57292093 -66784079 + B1_Mus1 SINE Alu 1 148 0 6 1022 194 150 25 0 chr9 57292095 57292135 -66784037 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1022 1500 62 15 15 chr9 57292208 57292403 -66783769 + B2_Mm2 SINE B2 1 195 0 6 1022 407 63 16 0 chr9 57292459 57292522 -66783650 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1022 198 0 0 0 chr9 57292522 57292543 -66783629 + (GA)n Simple_repeat Simple_repeat 1 22 0 6 1022 564 279 105 42 chr9 57292546 57292785 -66783387 - B4 SINE B4 -35 257 4 6 1022 533 272 109 27 chr9 57292833 57293090 -66783082 - B4A SINE B4 -14 278 1 6 1022 1160 61 0 7 chr9 57293596 57293744 -66782428 + B1_Mus1 SINE Alu 2 148 0 6 1022 208 0 0 59 chr9 57293746 57293780 -66782392 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1022 546 90 60 0 chr9 57295247 57295347 -66780825 + (GGGAGA)n Simple_repeat Simple_repeat 3 108 0 6 1022 1622 47 0 0 chr9 57296574 57296765 -66779407 - B2_Mm1a SINE B2 -2 191 1 6 1022 331 154 19 0 chr9 57296812 57296864 -66779308 - HAL1-3A_ME LINE L1 -831 2027 1975 6 1022 186 133 0 0 chr9 57296864 57296894 -66779278 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1022 382 264 161 18 chr9 57296894 57297006 -66779166 - RSINE1 SINE B4 0 165 38 6 1022 745 243 0 0 chr9 57297243 57297379 -66778793 - B1_Mur1 SINE Alu -1 148 13 6 1022 945 182 89 25 chr9 57297635 57297838 -66778334 - B3 SINE B2 0 216 1 6 1022 348 301 87 108 chr9 57298129 57298360 -66777812 - B4 SINE B4 0 292 67 6 1022 861 310 86 51 chr9 57300023 57300397 -66775775 + MTD LTR MaLR 5 391 -28 6 1022 793 225 7 14 chr9 57300401 57300545 -66775627 - B1_Mur1 SINE Alu -2 147 5 6 1022 416 278 68 17 chr9 57300637 57300754 -66775418 + RSINE1 SINE B4 1 123 -42 6 1022 198 118 0 0 chr9 57300861 57300895 -66775277 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 6 1022 697 161 0 33 chr9 57300927 57301049 -66775123 + PB1D9 SINE Alu 3 120 0 6 1022 742 249 62 52 chr9 57301478 57301766 -66774406 + RLTR15 LTR ERVK 1 291 -68 6 1022 1084 96 0 52 chr9 57301783 57301937 -66774235 + B1_Mm SINE Alu 2 147 0 6 1022 319 241 0 44 chr9 57302387 57302478 -66773694 + PB1D10 SINE Alu 2 88 -29 6 1022 585 315 6 58 chr9 57302553 57302725 -66773447 + RSINE1 SINE B4 3 165 0 6 1022 773 262 0 150 chr9 57302752 57302999 -66773173 + B3 SINE B2 1 210 -6 6 1022 576 260 110 0 chr9 57303141 57303295 -66772877 - B3 SINE B2 -8 208 38 6 1022 475 153 14 0 chr9 57303724 57303796 -66772376 - B3 SINE B2 -131 85 13 6 1022 567 308 52 62 chr9 57303855 57304146 -66772026 + B4A SINE B4 5 292 0 6 1022 360 248 195 18 chr9 57304330 57304494 -66771678 + L1MC4 LINE L1 7295 7487 -555 6 1022 228 333 36 27 chr9 57304505 57304616 -66771556 + PB1D10 SINE Alu 1 112 -5 6 1022 1268 98 60 0 chr9 57304660 57304843 -66771329 + B2_Mm2 SINE B2 2 195 0 6 1022 694 219 125 0 chr9 57305393 57305553 -66770619 + B3A SINE B2 1 180 -18 7 1022 471 263 66 8 chr9 57305769 57305907 -66770265 - B1F SINE Alu -4 145 1 7 1022 541 252 84 80 chr9 57305963 57306226 -66769946 + B4A SINE B4 2 265 -27 7 1022 717 151 0 8 chr9 57306191 57306311 -66769861 + B1_Mur3 SINE Alu 31 149 0 7 1022 284 347 14 0 chr9 57306309 57306381 -66769791 + RSINE1 SINE B4 82 154 -11 7 1022 588 243 6 176 chr9 57306450 57306615 -66769557 - B1_Mur1 SINE Alu -6 143 7 7 1022 23 68 0 0 chr9 57306621 57306665 -66769507 + AT_rich Low_complexity Low_complexity 1 44 0 7 1022 499 277 21 21 chr9 57306735 57306879 -66769293 - Lx9 LINE L1 -152 7492 7349 7 1022 21 0 0 0 chr9 57306882 57306903 -66769269 + AT_rich Low_complexity Low_complexity 1 21 0 7 1022 391 286 8 59 chr9 57306924 57307043 -66769129 + ID_B1 SINE B4 95 207 -17 7 1022 327 81 22 169 chr9 57307048 57307137 -66769035 + B1F SINE Alu 73 148 -1 7 1022 539 223 32 63 chr9 57307159 57307317 -66768855 + RSINE1 SINE B4 11 163 -2 7 1022 271 190 17 0 chr9 57307563 57307621 -66768551 - B1F1 SINE Alu 0 149 91 7 1022 243 238 133 38 chr9 57307621 57307668 -66768504 - ID_B1 SINE B4 0 224 110 7 1022 976 192 17 17 chr9 57307671 57307846 -66768326 - B3 SINE B2 -41 175 1 7 1022 469 271 107 112 chr9 57308239 57308316 -66767856 - MT2B LTR ERVL -215 386 197 7 1022 1126 57 7 0 chr9 57308316 57308457 -66767715 - B1_Mus2 SINE Alu 0 147 6 7 1022 469 271 107 112 chr9 57308457 57308472 -66767700 - MT2B LTR ERVL -215 196 155 7 1022 433 299 14 27 chr9 57308478 57308607 -66767565 + ID_B1 SINE B4 79 205 -19 7 1022 539 294 27 21 chr9 57308607 57308779 -66767393 + B3A SINE B2 4 177 -21 7 1022 297 0 0 0 chr9 57308779 57308812 -66767360 + (CATA)n Simple_repeat Simple_repeat 4 36 0 7 1022 539 294 27 21 chr9 57308812 57308827 -66767345 + B3A SINE B2 178 192 -6 7 1022 433 299 14 27 chr9 57308827 57308845 -66767327 + ID_B1 SINE B4 206 223 -1 7 1022 510 247 12 61 chr9 57308909 57309073 -66767099 + ID_B1 SINE B4 62 217 -7 7 1022 866 108 0 44 chr9 57308946 57309082 -66767090 + B1_Mur2 SINE Alu 20 149 0 7 1022 1060 72 7 0 chr9 57309154 57309292 -66766880 - B1_Mus2 SINE Alu 0 147 9 7 1022 392 225 8 159 chr9 57309189 57309321 -66766851 - MT2B LTR ERVL -337 264 153 7 1022 654 307 33 0 chr9 57309615 57309768 -66766404 + RSINE1 SINE B4 8 165 0 7 1022 994 159 101 50 chr9 57309796 57309995 -66766177 - B3 SINE B2 -6 210 2 7 1022 770 226 0 19 chr9 57310016 57310172 -66766000 - B3 SINE B2 -6 210 58 7 1022 480 147 0 0 chr9 57310172 57310247 -66765925 - LTRIS_Mus LTR ERV1 0 587 513 7 1022 365 43 0 0 chr9 57310250 57310296 -66765876 + LTRIS_Mus LTR ERV1 212 257 -330 7 1022 339 206 0 0 chr9 57310288 57310351 -66765821 - B3 SINE B2 -153 63 1 7 1022 257 181 126 11 chr9 57310642 57310737 -66765435 + B3 SINE B2 111 216 0 7 1022 231 309 47 47 chr9 57310753 57310838 -66765334 + PB1D9 SINE Alu 3 87 -33 7 1022 529 319 84 0 chr9 57310853 57311019 -66765153 + ID_B1 SINE B4 26 205 -19 7 1022 491 263 0 0 chr9 57311337 57311451 -66764721 + PB1D9 SINE Alu 2 115 -5 7 1022 930 185 73 20 chr9 57311471 57311675 -66764497 + B3 SINE B2 2 216 0 7 1022 1312 20 0 0 chr9 57312649 57312796 -66763376 + B1_Mus2 SINE Alu 1 147 0 7 1022 189 0 0 0 chr9 57312796 57312817 -66763355 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1022 603 241 35 7 chr9 57312854 57312996 -66763176 - B1F1 SINE Alu 0 149 4 7 1022 509 263 0 0 chr9 57313712 57313807 -66762365 - PB1D7 SINE Alu -8 112 18 7 1022 395 342 8 24 chr9 57313727 57313850 -66762322 - ID_B1 SINE B4 -49 175 55 7 1022 803 172 138 0 chr9 57314341 57314515 -66761657 + B3 SINE B2 5 202 -14 7 1022 189 74 0 0 chr9 57315772 57315799 -66760373 + (CGCTG)n Simple_repeat Simple_repeat 5 31 0 7 1022 234 192 0 71 chr9 57316122 57316178 -66759994 + MIRb SINE MIR 124 175 -93 7 1022 586 200 74 37 chr9 57316221 57316373 -66759799 + B3 SINE B2 1 142 -53 7 1022 441 245 29 29 chr9 57316313 57316418 -66759754 + B1_Mur2 SINE Alu 26 130 -19 7 1022 360 308 21 63 chr9 57316455 57316597 -66759575 + B1_Mur2 SINE Alu 7 142 -7 7 1022 29 78 0 0 chr9 57317165 57317229 -66758943 + AT_rich Low_complexity Low_complexity 1 64 0 7 1022 768 214 46 51 chr9 57317229 57317446 -66758726 - B3 SINE B2 0 216 1 7 1022 472 253 50 19 chr9 57317678 57317839 -66758333 - RLTR42-int LTR ERVK -4122 1400 1235 7 1022 1228 36 0 0 chr9 57317840 57317980 -66758192 + B1_Mus1 SINE Alu 3 142 -6 7 1022 188 35 35 0 chr9 57317984 57318013 -66758159 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1022 1101 51 0 28 chr9 57318422 57318563 -66757609 + B2_Mm2 SINE B2 1 137 -58 7 1022 292 183 50 0 chr9 57318827 57318887 -66757285 - MTE2b LTR MaLR -1 378 316 7 1022 187 54 26 26 chr9 57318898 57318936 -66757236 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 7 1022 526 280 32 0 chr9 57318937 57319062 -66757110 + RSINE1 SINE B4 35 163 -2 7 1022 205 179 0 0 chr9 57319075 57319114 -66757058 + GA-rich Low_complexity Low_complexity 2 40 0 7 1022 383 180 0 0 chr9 57319116 57319177 -66756995 + B3 SINE B2 8 68 -148 7 1022 1709 16 0 0 chr9 57319636 57319824 -66756348 - B2_Mm1a SINE B2 -5 188 1 7 1022 246 81 0 0 chr9 57319826 57319863 -66756309 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1022 376 284 0 11 chr9 57319868 57319957 -66756215 - MTE2a LTR MaLR -291 88 1 7 1022 190 263 0 0 chr9 57319982 57320020 -66756152 + L2a LINE L2 3374 3411 -15 7 1022 275 264 75 21 chr9 57320421 57320514 -66755658 - MIR SINE MIR -76 186 89 7 1022 1220 174 5 10 chr9 57320573 57320782 -66755390 - B3 SINE B2 -6 210 3 7 1022 679 243 31 113 chr9 57320799 57321124 -66755048 + MTE2a LTR MaLR 1 371 -8 7 1022 180 0 0 0 chr9 57321471 57321491 -66754681 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1022 423 0 0 0 chr9 57321736 57321783 -66754389 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1022 5663 112 101 3 chr9 57321803 57322673 -66753499 + RMER17B LTR ERVK 1 955 -3 7 1022 26 0 0 0 chr9 57322693 57322719 -66753453 + AT_rich Low_complexity Low_complexity 1 26 0 7 1022 194 105 0 26 chr9 57322725 57322764 -66753408 + (GTTTG)n Simple_repeat Simple_repeat 3 40 0 7 1022 1553 43 27 0 chr9 57322765 57322952 -66753220 - B2_Mm1a SINE B2 0 193 2 7 1022 836 166 14 7 chr9 57322962 57323102 -66753070 - B1_Mur2 SINE Alu -8 141 1 7 1022 369 109 0 0 chr9 57323111 57323166 -66753006 + (CCTG)n Simple_repeat Simple_repeat 4 58 0 7 1022 431 301 26 0 chr9 57323284 57323397 -66752775 - PB1D10 SINE Alu 0 117 2 7 1022 352 171 134 17 chr9 57323665 57323784 -66752388 + L1M4 LINE L1 5198 5330 -816 7 1022 743 187 7 29 chr9 57323788 57323926 -66752246 + B1_Mur2 SINE Alu 1 135 -14 7 1022 375 23 0 0 chr9 57323928 57323972 -66752200 + (TAA)n Simple_repeat Simple_repeat 2 45 0 7 1022 220 341 103 7 chr9 57323977 57324113 -66752059 + B1F SINE Alu 1 149 0 7 1022 667 225 61 103 chr9 57324116 57324329 -66751843 + B3 SINE B2 2 205 -11 7 1022 1143 95 7 0 chr9 57324369 57324516 -66751656 - B1_Mus1 SINE Alu 0 148 1 7 1022 368 282 0 0 chr9 57324540 57324611 -66751561 + ID4_ SINE ID 2 72 -11 7 1022 1607 132 78 31 chr9 57324619 57324908 -66751264 - RLTR11B LTR ERVK 0 453 148 7 1022 2835 64 143 139 chr9 57324908 57325418 -66750754 - RLTR1B LTR ERV1 0 512 1 7 1022 1607 132 78 31 chr9 57325418 57325448 -66750724 - RLTR11B LTR ERVK -306 147 119 7 1022 15995 113 40 39 chr9 57325448 57328636 -66747536 - RLTR1B-int LTR ERV1 -30 3269 1 7 1022 2764 73 143 139 chr9 57328636 57329146 -66747026 - RLTR1B LTR ERV1 0 512 1 7 1022 881 141 7 13 chr9 57329146 57329297 -66746875 - RLTR11B LTR ERVK -301 152 3 7 1022 1246 61 0 0 chr9 57329297 57329444 -66746728 + B1_Mm SINE Alu 1 147 0 7 1022 955 236 50 23 chr9 57329463 57329762 -66746410 - MYSERV-int LTR ERVK -2 6548 6242 7 1022 377 253 13 0 chr9 57330020 57330099 -66746073 - ID4 SINE ID -1 82 3 7 1022 327 343 46 0 chr9 57330122 57330230 -66745942 + PB1D10 SINE Alu 2 114 -3 7 1022 273 233 40 0 chr9 57330241 57330359 -66745813 + L1M4 LINE L1 5613 5739 -439 7 1022 878 180 19 112 chr9 57330382 57330588 -66745584 + B3 SINE B2 25 211 -5 7 1022 25 31 0 0 chr9 57330588 57330620 -66745552 + AT_rich Low_complexity Low_complexity 1 32 0 7 1022 807 179 30 0 chr9 57330630 57330764 -66745408 + B1_Mur2 SINE Alu 12 149 0 7 1022 481 169 0 35 chr9 57331455 57331541 -66744631 + PB1D10 SINE Alu 34 116 -1 7 1022 276 30 0 0 chr9 57332397 57332430 -66743742 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1022 22 70 0 0 chr9 57333151 57333194 -66742978 + AT_rich Low_complexity Low_complexity 1 43 0 7 1022 244 280 146 29 chr9 57333430 57333533 -66742639 + PB1D10 SINE Alu 2 116 -1 7 1022 252 0 0 0 chr9 57334267 57334295 -66741877 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7 1022 692 211 14 0 chr9 57334304 57334446 -66741726 - RSINE1 SINE B4 -19 146 3 7 1022 1696 199 102 16 chr9 57334672 57335055 -66741117 + MTD LTR MaLR 3 418 -1 7 1022 629 251 62 12 chr9 57336361 57336522 -66739650 + MTEa LTR MaLR 1 169 -210 7 1022 378 0 0 0 chr9 57336616 57336658 -66739514 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1022 220 262 0 0 chr9 57336662 57336704 -66739468 - B1F SINE Alu -107 42 1 7 1022 787 129 35 0 chr9 57336777 57336893 -66739279 - B1_Mur1 SINE Alu -9 140 21 7 1022 343 191 19 113 chr9 57336804 57336910 -66739262 - MT2B LTR ERVL -338 263 168 8 1022 512 252 85 16 chr9 57336914 57337043 -66739129 - ID_B1 SINE B4 -3 221 84 8 1022 213 65 0 0 chr9 57337049 57337080 -66739092 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1022 1149 58 0 0 chr9 57337080 57337217 -66738955 - B1_Mus1 SINE Alu -10 138 2 8 1022 349 288 155 14 chr9 57337344 57337492 -66738680 - MER63D DNA AcHobo -700 361 193 8 1022 655 261 57 5 chr9 57337494 57337706 -66738466 + ID_B1 SINE B4 2 224 0 8 1022 667 179 14 0 chr9 57337706 57337851 -66738321 + GA-rich Low_complexity Low_complexity 2 148 0 8 1022 532 219 55 70 chr9 57337851 57338052 -66738120 - MER63D DNA AcHobo -846 215 18 8 1022 459 0 0 0 chr9 57338136 57338187 -66737985 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 8 1022 1904 147 78 23 chr9 57338271 57338483 -66737689 + ORR1B2 LTR MaLR 1 235 -132 8 1022 2623 81 268 31 chr9 57338483 57338939 -66737233 - LTRIS2 LTR ERV1 0 564 1 8 1022 1904 147 78 23 chr9 57338939 57339074 -66737098 + ORR1B2 LTR MaLR 236 367 0 8 1022 467 248 28 92 chr9 57339075 57339217 -66736955 - ID_B1 SINE B4 -90 134 2 8 1022 590 218 97 87 chr9 57339581 57339775 -66736397 - B3 SINE B2 0 216 21 8 1022 748 189 147 40 chr9 57339775 57339973 -66736199 - MTC LTR MaLR 0 421 203 8 1022 408 237 92 42 chr9 57339919 57340038 -66736134 - RSINE1 SINE B4 -38 127 3 8 1022 245 206 47 16 chr9 57340038 57340100 -66736072 - Tigger13a DNA MER2_type -421 350 287 8 1022 309 269 75 23 chr9 57340457 57340590 -66735582 - LTR16B2 LTR ERVL -57 405 266 8 1022 446 227 30 20 chr9 57340646 57340745 -66735427 - RSINE1 SINE B4 -47 118 19 8 1022 567 78 0 0 chr9 57340762 57340839 -66735333 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 8 1022 592 209 95 157 chr9 57340850 57340874 -66735298 - B3A SINE B2 0 198 180 8 1022 438 20 0 0 chr9 57340874 57340925 -66735247 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 8 1022 1079 88 0 135 chr9 57340925 57341055 -66735117 - B2_Mm2 SINE B2 -34 161 47 8 1022 1429 81 5 0 chr9 57341055 57341241 -66734931 + B2_Mm1a SINE B2 3 189 -4 8 1022 1079 88 0 135 chr9 57341241 57341295 -66734877 - B2_Mm2 SINE B2 -149 46 2 8 1022 1040 78 0 21 chr9 57341808 57341951 -66734221 - MT2B2 LTR ERVL -443 141 2 8 1022 1467 218 203 39 chr9 57342114 57342508 -66733664 - RMER2 LTR ERV1 0 567 107 8 1022 2050 104 33 54 chr9 57342508 57342762 -66733410 - ORR1A2 LTR MaLR 0 327 90 8 1022 1325 63 46 0 chr9 57342762 57342937 -66733235 + B2_Mm2 SINE B2 2 184 -11 8 1022 2050 104 33 54 chr9 57342937 57343016 -66733156 - ORR1A2 LTR MaLR -238 89 1 8 1022 1467 218 203 39 chr9 57343016 57343108 -66733064 - RMER2 LTR ERV1 -461 106 1 8 1022 419 242 105 0 chr9 57343208 57343303 -66732869 - B3A SINE B2 -50 148 44 8 1022 864 192 0 7 chr9 57343464 57343611 -66732561 + B1_Mus2 SINE Alu 2 147 0 8 1022 487 224 10 0 chr9 57343630 57343728 -66732444 - RSINE1 SINE B4 -22 143 45 8 1022 26 0 0 0 chr9 57343757 57343783 -66732389 + AT_rich Low_complexity Low_complexity 1 26 0 8 1022 561 339 158 43 chr9 57343789 57344208 -66731964 + MLT1G3 LTR MaLR 93 559 -36 8 1022 834 120 0 0 chr9 57344288 57344405 -66731767 + B1_Mus1 SINE Alu 1 117 -31 8 1022 433 244 8 75 chr9 57344291 57344424 -66731748 + MT2B LTR ERVL 168 291 -310 8 1022 376 228 38 0 chr9 57344697 57344776 -66731396 + ID4 SINE ID 2 83 0 8 1022 240 291 28 106 chr9 57344794 57344936 -66731236 + Lx8 LINE L1 6992 7122 -351 8 1022 1171 219 158 0 chr9 57344970 57345267 -66730905 - MTD LTR MaLR -2 417 74 8 1022 550 244 87 0 chr9 57345294 57345409 -66730763 + RSINE1 SINE B4 5 129 -36 8 1022 306 50 0 0 chr9 57345419 57345459 -66730713 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1022 922 117 13 33 chr9 57345490 57345640 -66730532 + B1_Mur4 SINE Alu 3 149 -1 8 1022 449 296 11 86 chr9 57345652 57345826 -66730346 + RSINE1 SINE B4 1 161 -4 8 1022 355 323 84 64 chr9 57345910 57346161 -66730011 - LTR84b LTR ERVL -499 262 7 8 1022 634 166 391 0 chr9 57346858 57347009 -66729163 - B3 SINE B2 -6 210 1 8 1022 705 255 54 36 chr9 57347035 57347202 -66728970 - B3 SINE B2 0 216 47 8 1022 337 154 153 8 chr9 57347424 57347515 -66728657 + MLT1F1 LTR MaLR 3 100 -455 8 1022 379 346 61 30 chr9 57347656 57347820 -66728352 + MLT1F2 LTR MaLR 392 560 0 8 1022 727 221 29 0 chr9 57347890 57348030 -66728142 + B1_Mur2 SINE Alu 1 144 -5 8 1022 222 118 0 0 chr9 57348050 57348084 -66728088 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1022 638 230 48 5 chr9 57348086 57348239 -66727933 - B3A SINE B2 -53 163 1 8 1022 255 196 139 102 chr9 57348242 57348350 -66727822 - PB1D7 SINE Alu 0 120 9 8 1022 357 264 82 77 chr9 57348412 57348641 -66727531 + RSINE1 SINE B4 1 219 -73 8 1022 299 299 18 61 chr9 57348551 57348665 -66727507 + PB1D10 SINE Alu 6 114 -3 8 1022 466 150 78 20 chr9 57348677 57348779 -66727393 - B1_Mur1 SINE Alu 0 149 42 8 1022 367 267 29 29 chr9 57348951 57349055 -66727117 - ID_B1 SINE B4 0 224 121 8 1022 354 176 39 15 chr9 57349142 57349228 -66726944 - MIR SINE MIR -100 162 84 8 1022 400 252 17 78 chr9 57349230 57349346 -66726826 + Arthur1A DNA Tip100 19 127 -50 8 1022 501 161 65 0 chr9 57354167 57354260 -66721912 - PB1D10 SINE Alu -1 116 18 8 1022 225 300 134 18 chr9 57354185 57354297 -66721875 - B4 SINE B4 -105 187 63 8 1022 614 306 11 45 chr9 57354371 57354522 -66721650 + ID_B1 SINE B4 5 157 -67 8 1022 1318 61 66 0 chr9 57354522 57354703 -66721469 + B2_Mm2 SINE B2 3 195 0 8 1022 614 306 11 45 chr9 57354703 57354729 -66721443 + ID_B1 SINE B4 158 176 -48 8 1022 1196 75 0 0 chr9 57354860 57355007 -66721165 + B1_Mus1 SINE Alu 2 148 0 8 1022 3013 38 0 0 chr9 57355264 57355610 -66720562 + ORR1A0 LTR MaLR 1 346 0 8 1022 14260 46 16 7 chr9 57355610 57357387 -66718785 + ORR1A0-int LTR MaLR 1 1792 0 8 1022 2720 43 61 0 chr9 57357387 57357713 -66718459 + ORR1A0 LTR MaLR 1 346 0 8 1022 559 271 47 28 chr9 57358007 57358220 -66717952 - RMER15 LTR ERVL -12 563 347 8 1022 380 313 44 30 chr9 57358695 57358717 -66717455 + ID_B1 SINE B4 77 213 -11 8 1022 422 257 71 0 chr9 57358717 57358830 -66717342 + B1F SINE Alu 18 138 -11 8 1022 495 0 0 0 chr9 57358962 57359017 -66717155 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 8 1022 1415 75 32 5 chr9 57359089 57359278 -66716894 + B2_Mm2 SINE B2 1 194 -1 8 1022 1079 70 27 34 chr9 57359278 57359411 -66716761 + B1_Mus2 SINE Alu 1 137 -10 8 1022 180 0 0 0 chr9 57359411 57359431 -66716741 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 1022 1079 70 27 34 chr9 57359431 57359444 -66716728 + B1_Mus2 SINE Alu 138 145 -2 8 1022 939 150 14 0 chr9 57359470 57359617 -66716555 + B1_Mur4 SINE Alu 2 150 0 8 1022 207 0 0 0 chr9 57360217 57360240 -66715932 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 8 1022 795 259 6 6 chr9 57360241 57360408 -66715764 - B3 SINE B2 -46 170 4 8 1022 361 234 13 13 chr9 57360507 57360585 -66715587 + RSINE1 SINE B4 35 112 -53 8 1022 374 234 111 9 chr9 57360644 57360752 -66715420 + B1F1 SINE Alu 10 128 -21 8 1022 895 154 6 6 chr9 57360829 57360999 -66715173 + GA-rich Low_complexity Low_complexity 4 173 0 8 1022 1553 171 95 20 chr9 57361073 57361295 -66714877 + ORR1D1 LTR MaLR 1 228 -146 8 1022 631 55 31 31 chr9 57361295 57361425 -66714747 + (CCTG)n Simple_repeat Simple_repeat 1 130 0 8 1022 1553 171 95 20 chr9 57361425 57361548 -66714624 + ORR1D1 LTR MaLR 229 372 -2 8 1022 424 302 28 126 chr9 57361589 57361654 -66714518 + MLT1C LTR MaLR 103 158 -309 8 1022 564 217 181 29 chr9 57361654 57361825 -66714347 + B3A SINE B2 1 197 -1 8 1022 424 302 28 126 chr9 57361825 57362013 -66714159 + MLT1C LTR MaLR 159 331 -136 8 1022 532 174 3 0 chr9 57362032 57362138 -66714034 - B1_Mus2 SINE Alu -39 108 1 8 1022 196 225 50 0 chr9 57362368 57362408 -66713764 + MIR SINE MIR 103 144 -64 8 1022 516 258 19 19 chr9 57362486 57362640 -66713532 + RSINE1 SINE B4 8 161 -4 8 1022 1434 63 5 25 chr9 57362667 57362863 -66713309 + B2_Mm2 SINE B2 1 192 -3 8 1022 681 240 0 0 chr9 57362866 57362995 -66713177 - B1_Mur2 SINE Alu -20 129 1 8 1022 1127 82 123 0 chr9 57363015 57363185 -66712987 + B2_Mm1a SINE B2 1 191 -2 8 1022 1194 69 0 0 chr9 57363185 57363329 -66712843 + B1_Mm SINE Alu 1 145 -2 8 1022 237 65 0 0 chr9 57363330 57363361 -66712811 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 8 1022 549 253 93 12 chr9 57363695 57363867 -66712305 - B3A SINE B2 -11 187 2 8 1022 1269 34 0 0 chr9 57363904 57364051 -66712121 + B1_Mus2 SINE Alu 1 147 0 8 1022 209 22 87 22 chr9 57364053 57364099 -66712073 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 8 1022 584 280 30 0 chr9 57364101 57364233 -66711939 - B3A SINE B2 -8 190 55 8 1022 303 146 0 0 chr9 57364302 57364357 -66711815 + (T)n Simple_repeat Simple_repeat 1 55 0 8 1022 993 55 86 0 chr9 57364368 57364496 -66711676 - B1_Mus1 SINE Alu -9 139 1 8 1022 449 260 10 20 chr9 57364534 57364636 -66711536 + PB1D10 SINE Alu 16 116 -1 8 1022 645 199 11 120 chr9 57364642 57364825 -66711347 + RSINE1 SINE B4 3 165 0 8 1022 240 35 0 0 chr9 57364922 57364951 -66711221 + (TGG)n Simple_repeat Simple_repeat 3 31 0 8 1022 265 300 25 12 chr9 57364968 57365049 -66711123 - ID2 SINE ID 0 83 2 8 1022 304 285 145 8 chr9 57365343 57365447 -66710725 + L1MB8 LINE L1 5559 5679 -499 8 1022 414 0 0 0 chr9 57365447 57365493 -66710679 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1022 304 285 145 8 chr9 57365493 57365512 -66710660 + L1MB8 LINE L1 5680 5698 -480 8 1022 225 321 55 28 chr9 57365513 57365622 -66710550 - L1M4 LINE L1 -1998 4148 4037 8 1022 296 308 15 0 chr9 57365750 57365815 -66710357 + RSINE1 SINE B4 3 68 -97 8 1022 279 182 91 0 chr9 57365876 57365931 -66710241 + RSINE1 SINE B4 85 144 -21 8 1022 514 197 40 2 chr9 57366022 57366135 -66710037 + MLT1B LTR MaLR 1 115 -352 9 1022 280 294 69 0 chr9 57366135 57366237 -66709935 + PB1D9 SINE Alu 3 111 -9 9 1022 257 176 36 3 chr9 57366275 57366342 -66709830 + L1MB8 LINE L1 5879 5946 -228 8 1022 485 197 102 36 chr9 57366349 57366486 -66709686 + B1F SINE Alu 2 147 -2 9 1022 598 233 142 16 chr9 57366572 57366755 -66709417 + B3 SINE B2 2 207 -9 9 1022 669 115 164 47 chr9 57366800 57366928 -66709244 - B1_Mus1 SINE Alu -6 144 2 9 1022 210 214 0 0 chr9 57367122 57367164 -66709008 - ID4_ SINE ID -39 44 3 9 1022 3087 53 3 0 chr9 57367178 57367555 -66708617 - L1_Mus2 LINE L1 -4 6562 6185 9 1022 309 225 37 24 chr9 57367572 57367648 -66708524 + MTEb LTR MaLR 293 369 -10 9 1022 493 171 19 2 chr9 57367648 57367751 -66708421 + PB1D9 SINE Alu 1 103 -17 9 1022 2251 108 78 9 chr9 57367749 57368095 -66708077 - ORR1C1 LTR MaLR -8 370 1 9 1022 650 234 51 103 chr9 57368249 57368444 -66707728 - B3A SINE B2 0 198 14 9 1022 229 279 101 0 chr9 57368563 57368642 -66707530 - PB1D10 SINE Alu -28 89 3 9 1022 238 275 43 0 chr9 57370039 57370108 -66706064 - ID2 SINE ID -11 72 1 9 1022 326 239 34 0 chr9 57370144 57370232 -66705940 - B1_Mur4 SINE Alu 0 150 60 9 1022 364 214 112 60 chr9 57370244 57370378 -66705794 - B1F SINE Alu -7 142 2 9 1022 372 280 118 8 chr9 57370739 57370858 -66705314 - ID_B1 SINE B4 -13 211 80 9 1022 354 221 424 26 chr9 57370876 57371027 -66705145 + B3A SINE B2 5 216 0 9 1022 280 321 87 51 chr9 57371238 57371255 -66704917 - B4A SINE B4 -73 219 146 9 1022 435 321 0 19 chr9 57371255 57371363 -66704809 - B1F SINE Alu -43 106 1 9 1022 280 321 87 51 chr9 57371363 57371376 -66704796 - B4A SINE B4 -73 145 77 9 1022 931 102 0 0 chr9 57371383 57371510 -66704662 - B1_Mur4 SINE Alu -15 135 9 9 1022 441 246 56 56 chr9 57371402 57371527 -66704645 - B4 SINE B4 -88 204 80 9 1022 230 283 33 52 chr9 57371408 57371561 -66704611 - ORR1B1-int LTR MaLR -755 754 605 9 1022 325 250 174 20 chr9 57372184 57372282 -66703890 + B1_Mus2 SINE Alu 1 113 -34 9 1022 255 103 0 0 chr9 57372291 57372330 -66703842 + (GGA)n Simple_repeat Simple_repeat 1 39 0 9 1022 1083 111 153 5 chr9 57372480 57372670 -66703502 - URR1A DNA MER1_type 0 226 9 9 1022 220 323 98 29 chr9 57372714 57372816 -66703356 - B4A SINE B4 -127 165 57 9 1022 909 28 0 0 chr9 57372842 57372950 -66703222 + (TTTCC)n Simple_repeat Simple_repeat 2 109 0 9 1022 238 140 220 34 chr9 57372957 57373016 -66703156 - ID_B1 SINE B4 -14 210 141 9 1022 189 0 0 0 chr9 57373115 57373136 -66703036 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 1022 310 307 128 26 chr9 57373500 57373617 -66702555 - ID_B1 SINE B4 -29 195 67 9 1022 255 260 88 80 chr9 57373745 57373858 -66702314 + MT2B LTR ERVL 143 256 -345 9 1022 375 230 191 17 chr9 57373770 57373885 -66702287 + ID_B1 SINE B4 82 216 -8 9 1022 440 217 36 22 chr9 57374300 57374428 -66701744 - PB1D9 SINE Alu 0 149 23 9 1022 223 208 0 70 chr9 57374479 57374536 -66701636 - PB1D7 SINE Alu -1 119 67 9 1022 312 246 32 88 chr9 57374899 57374977 -66701195 - L1M5 LINE L1 -506 5658 5585 9 1022 1104 76 21 0 chr9 57374977 57375121 -66701051 + B1_Mus2 SINE Alu 1 147 0 9 1022 312 246 32 88 chr9 57375121 57375167 -66701005 - L1M5 LINE L1 -580 5584 5541 9 1022 1686 16 16 0 chr9 57375596 57375786 -66700386 + B2_Mm1a SINE B2 1 193 0 9 1022 519 298 52 17 chr9 57375796 57375973 -66700199 + B3A SINE B2 27 212 -4 9 1022 460 292 44 31 chr9 57375984 57376143 -66700029 - RSINE1 SINE B4 -1 164 4 9 1022 434 250 82 10 chr9 57376143 57376240 -66699932 - PB1D10 SINE Alu -11 106 3 9 1022 220 204 35 69 chr9 57376281 57376339 -66699833 - B1F SINE Alu -1 148 93 9 1022 1248 48 0 0 chr9 57376344 57376491 -66699681 + B1_Mm SINE Alu 1 147 0 9 1022 216 269 12 60 chr9 57376509 57376592 -66699580 + PB1 SINE Alu 49 127 0 9 1022 218 253 132 13 chr9 57377879 57377955 -66698217 - MIR SINE MIR -63 145 61 9 1022 246 200 93 214 chr9 57378286 57378426 -66697746 + MT2B2 LTR ERVL 142 264 -320 9 1022 674 128 22 127 chr9 57378317 57378451 -66697721 + B1_Mur2 SINE Alu 17 136 -13 9 1022 1460 54 38 0 chr9 57378466 57378652 -66697520 - B2_Mm1a SINE B2 0 193 1 9 1022 711 185 161 78 chr9 57378677 57378870 -66697302 + B3 SINE B2 4 212 -4 9 1022 563 224 51 25 chr9 57378874 57379037 -66697135 + B3 SINE B2 11 168 -27 9 1022 207 0 0 0 chr9 57379037 57379060 -66697112 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1022 396 289 28 83 chr9 57379060 57379077 -66697095 + B2_Mm2 SINE B2 169 181 -14 9 1022 281 236 200 59 chr9 57379299 57379434 -66696738 - ID_B1 SINE B4 -69 155 2 9 1022 554 286 25 12 chr9 57379644 57379807 -66696365 - RSINE1 SINE B4 0 165 1 9 1022 403 199 35 44 chr9 57380275 57380406 -66695766 + PB1D9 SINE Alu 1 128 -21 9 1022 1196 102 73 6 chr9 57380886 57381064 -66695108 + B2_Mm2 SINE B2 1 190 -5 9 1022 941 144 20 0 chr9 57381067 57381213 -66694959 + B1_Mur4 SINE Alu 2 150 0 9 1022 183 156 0 0 chr9 57381224 57381256 -66694916 + GA-rich Low_complexity Low_complexity 3 34 0 9 1022 252 203 43 14 chr9 57381631 57381701 -66694471 - B1F2 SINE Alu -73 76 5 9 1022 937 159 12 52 chr9 57382115 57382287 -66693885 - URR1B DNA MER1_type -60 165 1 9 1022 402 294 54 31 chr9 57382414 57382544 -66693628 + RSINE1 SINE B4 4 136 -29 9 1022 421 272 79 0 chr9 57382647 57382761 -66693411 + B1_Mus2 SINE Alu 8 130 -17 9 1022 636 152 132 31 chr9 57382814 57382943 -66693229 - B1_Mus2 SINE Alu 0 147 6 9 1022 361 234 140 61 chr9 57382991 57383105 -66693067 - RSINE1 SINE B4 -33 132 10 9 1022 945 111 15 0 chr9 57383521 57383656 -66692516 + B1_Mus1 SINE Alu 1 137 -11 9 1022 378 0 0 0 chr9 57383671 57383713 -66692459 + (TTA)n Simple_repeat Simple_repeat 2 43 0 9 1022 231 246 48 16 chr9 57383882 57383944 -66692228 - ID4_ SINE ID -16 67 4 9 1022 532 263 26 0 chr9 57383991 57384105 -66692067 + PB1D10 SINE Alu 1 117 0 9 1022 333 245 147 0 chr9 57384494 57384596 -66691576 - PB1D10 SINE Alu 0 117 1 9 1022 231 232 0 0 chr9 57384615 57384671 -66691501 + GA-rich Low_complexity Low_complexity 3 58 0 9 1022 1051 64 0 28 chr9 57384763 57384908 -66691264 + B1_Mus1 SINE Alu 8 148 0 9 1022 216 311 150 63 chr9 57386298 57386425 -66689747 - L4 LINE RTE -167 1862 1725 9 1022 215 302 239 0 chr9 57387305 57387510 -66688662 - L3 LINE CR1 -16 4473 4220 9 1022 772 107 36 0 chr9 57388098 57388210 -66687962 - B1_Mus1 SINE Alu -23 125 10 9 1022 219 200 138 0 chr9 57389578 57389643 -66686529 + BC1_Mm scRNA scRNA 22 95 -57 9 1022 1160 48 0 13 chr9 57389762 57389911 -66686261 - B1_Mus1 SINE Alu 0 148 2 9 1022 714 151 23 23 chr9 57391029 57391158 -66685014 - B1_Mur4 SINE Alu 0 150 22 9 1022 709 262 47 43 chr9 57391169 57391380 -66684792 - B3 SINE B2 -4 212 1 9 1022 1127 239 26 63 chr9 57391430 57391733 -66684439 + B4A SINE B4 1 292 0 9 1022 281 26 26 0 chr9 57392146 57392184 -66683988 + (TTCCC)n Simple_repeat Simple_repeat 5 43 0 9 1022 435 239 8 25 chr9 57393439 57393559 -66682613 + PB1D7 SINE Alu 1 118 -2 9 1022 281 259 83 62 chr9 57393592 57393736 -66682436 + B4A SINE B4 40 186 -106 9 1022 371 235 86 29 chr9 57394578 57394683 -66681489 + PB1D7 SINE Alu 1 111 -9 9 1022 1033 240 0 0 chr9 57394690 57394907 -66681265 + ID_B1 SINE B4 3 219 -5 9 1022 237 339 35 35 chr9 57395091 57395204 -66680968 + MER81 DNA AcHobo 2 114 0 9 1022 322 290 43 11 chr9 57397275 57397369 -66678803 + ID_B1 SINE B4 121 217 -7 9 1022 1101 178 45 0 chr9 57397380 57397582 -66678590 + B3 SINE B2 1 211 -5 9 1022 1026 78 43 0 chr9 57397606 57397747 -66678425 + B1_Mm SINE Alu 1 147 0 9 1022 930 228 24 10 chr9 57397758 57397966 -66678206 + B3 SINE B2 5 215 -1 9 1022 250 241 0 49 chr9 57398660 57398721 -66677451 - tRNA-Ala-GCA tRNA tRNA -5 70 13 9 1022 732 198 24 72 chr9 57398887 57399094 -66677078 + B3A SINE B2 1 197 -1 9 1022 25 31 0 0 chr9 57399094 57399126 -66677046 + AT_rich Low_complexity Low_complexity 1 32 0 9 1022 461 333 7 0 chr9 57399152 57399290 -66676882 + ID_B1 SINE B4 86 224 0 9 1022 1146 55 0 7 chr9 57399293 57399441 -66676731 + B1_Mus2 SINE Alu 1 147 0 9 1022 669 206 24 0 chr9 57399515 57399641 -66676531 + B1_Mur3 SINE Alu 1 129 -20 9 1022 189 0 0 0 chr9 57399646 57399667 -66676505 + (TC)n Simple_repeat Simple_repeat 1 21 0 9 1022 190 354 158 14 chr9 57400733 57400879 -66675293 - L2a LINE L2 -22 3404 3238 9 1022 346 317 0 0 chr9 57400879 57400961 -66675211 + B1F1 SINE Alu 1 82 -67 9 1022 233 259 0 0 chr9 57401126 57401184 -66674988 + (CACG)n Simple_repeat Simple_repeat 2 59 0 9 1022 278 311 65 19 chr9 57401336 57401444 -66674728 + MIRb SINE MIR 115 227 -41 9 1022 449 133 0 39 chr9 57401700 57401802 -66674370 + GA-rich Low_complexity Low_complexity 5 102 0 9 1022 755 140 154 46 chr9 57401833 57402028 -66674144 + B3 SINE B2 1 216 0 9 1022 391 191 74 7 chr9 57402338 57402446 -66673726 - PB1D9 SINE Alu -21 128 23 1 1022 478 224 153 85 chr9 57402613 57402789 -66673383 - B3A SINE B2 -2 196 9 1 1022 993 68 15 0 chr9 57402837 57402970 -66673202 + B1_Mus2 SINE Alu 2 136 -11 1 1022 425 296 14 22 chr9 57402992 57403130 -66673042 + ID_B1 SINE B4 88 224 0 1 1022 846 104 0 89 chr9 57403148 57403295 -66672877 + B1_Mus1 SINE Alu 4 137 -11 1 1022 200 59 29 0 chr9 57403295 57403329 -66672843 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1022 416 312 18 141 chr9 57403339 57403491 -66672681 + ID_B1 SINE B4 3 132 -92 1 1022 2349 102 49 8 chr9 57403491 57403858 -66672314 - RLTR14 LTR ERV1 0 382 1 1 1022 416 312 18 141 chr9 57403858 57403925 -66672247 + ID_B1 SINE B4 133 195 -29 1 1022 657 25 0 0 chr9 57403927 57404006 -66672166 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 1 1022 291 157 0 0 chr9 57404034 57404085 -66672087 + GA-rich Low_complexity Low_complexity 4 54 0 1 1022 909 117 0 67 chr9 57404116 57404309 -66671863 + GA-rich Low_complexity Low_complexity 1 180 0 1 1022 234 0 0 0 chr9 57404309 57404335 -66671837 + (GAAA)n Simple_repeat Simple_repeat 1 26 0 1 1022 284 129 68 54 chr9 57404336 57404384 -66671788 + L1Md_F2 LINE L1 6502 6549 -33 1 1022 1463 53 11 0 chr9 57404384 57404574 -66671598 + B2_Mm1a SINE B2 2 193 0 1 1022 284 156 18 112 chr9 57404574 57404667 -66671505 + L1Md_F2 LINE L1 6545 6584 0 1 1022 285 259 111 11 chr9 57404689 57404779 -66671393 + PB1D9 SINE Alu 5 103 -17 1 1022 500 246 102 0 chr9 57404849 57404967 -66671205 - B1F SINE Alu -15 134 5 1 1022 512 261 8 8 chr9 57405399 57405527 -66670645 + ID_B1 SINE B4 90 213 -11 1 1022 25 31 0 0 chr9 57405527 57405559 -66670613 + AT_rich Low_complexity Low_complexity 1 32 0 1 1022 774 289 43 50 chr9 57405734 57406011 -66670161 - B4A SINE B4 -17 275 1 1 1022 1062 24 0 0 chr9 57406016 57406141 -66670031 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 1 1022 496 163 0 23 chr9 57406141 57406223 -66669949 - ID_B1 SINE B4 -9 215 135 1 1022 815 228 41 20 chr9 57406227 57406424 -66669748 - B3 SINE B2 -15 201 1 1 1022 182 344 8 30 chr9 57407216 57407348 -66668824 - L2b LINE L2 -307 3068 2940 1 1022 452 276 63 24 chr9 57407399 57407525 -66668647 + RSINE1 SINE B4 7 137 -28 1 1022 225 0 0 0 chr9 57407598 57407623 -66668549 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1022 310 252 19 13 chr9 57407946 57408103 -66668069 + A-rich Low_complexity Low_complexity 3 160 0 1 1022 279 296 9 44 chr9 57408548 57408661 -66667511 + BC1_Mm scRNA scRNA 2 110 -42 1 1023 235 270 32 0 chr9 57410020 57410083 -66666089 - ID4_ SINE ID -3 80 16 1 1023 377 288 22 50 chr9 57410109 57410248 -66665924 - ID_B1 SINE B4 -6 218 84 1 1023 207 100 0 0 chr9 57411242 57411272 -66664900 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 1 1023 475 179 131 9 chr9 57411803 57411910 -66664262 - RSINE1 SINE B4 -38 127 8 1 1023 315 0 0 0 chr9 57412023 57412058 -66664114 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1023 288 0 0 0 chr9 57412060 57412092 -66664080 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1023 812 137 23 0 chr9 57412099 57412230 -66663942 - B1_Mus1 SINE Alu 0 148 15 1 1023 420 213 30 90 chr9 57412131 57412265 -66663907 - MT2B LTR ERVL -337 264 139 1 1023 1400 69 5 0 chr9 57412283 57412471 -66663701 - B2_Mm1t SINE B2 -3 190 2 1 1023 242 295 179 7 chr9 57412495 57412635 -66663537 - MER103 DNA DNA -1 165 2 1 1023 298 266 167 60 chr9 57412732 57412803 -66663369 - B4A SINE B4 -4 288 217 1 1023 261 0 0 0 chr9 57412803 57412832 -66663340 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1023 298 266 167 60 chr9 57412832 57412928 -66663244 - B4A SINE B4 -76 216 103 1 1023 492 246 105 82 chr9 57412928 57413116 -66663056 - B3A SINE B2 -6 210 20 1 1023 624 229 14 7 chr9 57413163 57413304 -66662868 + B1_Mur1 SINE Alu 1 142 -7 1 1023 243 257 26 39 chr9 57413317 57413394 -66662778 - B4 SINE B4 -216 76 1 1 1023 601 231 39 0 chr9 57414190 57414320 -66661852 - ID_B1 SINE B4 -9 215 81 1 1023 1034 207 19 15 chr9 57414374 57414580 -66661592 + B3 SINE B2 1 207 -9 1 1023 637 144 120 8 chr9 57415635 57415768 -66660404 - B1_Mur1 SINE Alu -1 148 1 1 1023 615 254 7 0 chr9 57415781 57415919 -66660253 - ID_B1 SINE B4 -3 221 83 1 1023 212 276 35 0 chr9 57416620 57416678 -66659494 + B1F2 SINE Alu 2 61 -88 1 1023 197 178 0 22 chr9 57416702 57416748 -66659424 + GA-rich Low_complexity Low_complexity 4 48 0 1 1023 1701 122 84 0 chr9 57416788 57417084 -66659088 - ORR1A4 LTR MaLR -8 321 1 1 1023 455 237 17 8 chr9 57417103 57417222 -66658950 + PB1D9 SINE Alu 1 120 0 1 1023 234 278 199 38 chr9 57417651 57417782 -66658390 - B4 SINE B4 -38 254 103 1 1023 470 222 0 66 chr9 57417678 57417784 -66658388 - PB1D7 SINE Alu -6 114 16 1 1023 247 259 21 105 chr9 57417712 57417807 -66658365 - MT2B2 LTR ERVL -343 241 155 1 1023 381 179 15 0 chr9 57417808 57417875 -66658297 - B1_Mur1 SINE Alu -6 143 76 1 1023 1179 87 36 47 chr9 57417876 57418069 -66658103 + B2_Mm2 SINE B2 3 193 -2 1 1023 1137 62 0 0 chr9 57418072 57418217 -66657955 + B1_Mus2 SINE Alu 3 147 0 1 1023 233 29 29 0 chr9 57418229 57418263 -66657909 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1023 576 272 63 11 chr9 57418271 57418446 -66657726 - ID_B1 SINE B4 -33 191 8 1 1023 436 237 109 44 chr9 57418661 57418798 -66657374 - B1F1 SINE Alu -2 147 2 1 1023 1077 216 56 151 chr9 57419102 57419512 -66656660 - MTE2a LTR MaLR -5 374 4 1 1023 225 0 0 0 chr9 57419737 57419762 -66656410 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1023 1161 61 0 0 chr9 57419762 57419909 -66656263 - B1_Mus2 SINE Alu 0 147 1 1 1023 249 318 55 74 chr9 57420330 57420376 -66655796 + MIRb SINE MIR 47 90 -178 1 1023 483 230 82 132 chr9 57420376 57420596 -66655576 - B3 SINE B2 -7 209 1 1 1023 249 318 55 74 chr9 57420596 57420712 -66655460 + MIRb SINE MIR 91 206 -62 1 1023 1233 91 37 5 chr9 57420774 57420962 -66655210 - B2_Mm2 SINE B2 0 195 2 1 1023 210 271 0 0 chr9 57420997 57421045 -66655127 + CT-rich Low_complexity Low_complexity 4 51 0 1 1023 509 205 179 0 chr9 57421052 57421164 -66655008 - RSINE1 SINE B4 -31 134 3 1 1023 401 272 44 0 chr9 57421214 57421328 -66654844 + B1F SINE Alu 5 123 -26 1 1023 28 0 0 0 chr9 57421394 57421422 -66654750 + AT_rich Low_complexity Low_complexity 1 28 0 1 1023 213 97 0 0 chr9 57421516 57421547 -66654625 + L2c LINE L2 3340 3370 -17 1 1023 240 122 0 0 chr9 57421561 57421602 -66654570 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 1 1023 180 0 0 0 chr9 57422056 57422076 -66654096 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1023 1197 91 28 6 chr9 57422077 57422253 -66653919 - B2_Mm2 SINE B2 -15 180 1 1 1023 1563 47 0 0 chr9 57422955 57423148 -66653024 + B2_Mm1t SINE B2 1 193 0 1 1023 1627 26 0 0 chr9 57423166 57423358 -66652814 + B2_Mm1a SINE B2 2 193 0 1 1023 467 312 43 0 chr9 57423375 57423513 -66652659 + ID_B1 SINE B4 80 223 -1 1 1023 476 234 7 93 chr9 57423761 57423912 -66652260 - B1F1 SINE Alu 0 149 12 1 1023 750 171 16 0 chr9 57423956 57424085 -66652087 - B1_Mus2 SINE Alu -16 131 1 1 1023 630 49 0 0 chr9 57424124 57424206 -66651966 - B1_Mus2 SINE Alu -8 139 58 1 1023 24 0 0 0 chr9 57424208 57424232 -66651940 + AT_rich Low_complexity Low_complexity 1 24 0 1 1023 1226 129 10 20 chr9 57424251 57424448 -66651724 + B2_Mm2 SINE B2 1 195 0 1 1023 277 316 63 0 chr9 57424626 57424721 -66651451 + BC1_Mm scRNA scRNA 1 101 -51 1 1023 245 264 153 0 chr9 57425823 57425895 -66650277 - ID4_ SINE ID 0 83 1 1 1023 308 292 30 30 chr9 57427470 57427590 -66648582 + B1F SINE Alu 1 120 0 1 1023 588 176 127 22 chr9 57428214 57428348 -66647824 + B1_Mur2 SINE Alu 1 148 -1 1 1023 767 183 96 11 chr9 57429977 57430165 -66646007 + ID_B1 SINE B4 4 207 -17 1 1023 372 71 0 0 chr9 57430258 57430314 -66645858 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1023 685 203 0 29 chr9 57430317 57430454 -66645718 - B3 SINE B2 -76 140 8 1 1023 228 35 0 0 chr9 57430472 57430501 -66645671 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1023 282 267 167 0 chr9 57430532 57430622 -66645550 - RSINE1 SINE B4 -59 106 2 1 1023 2037 187 131 47 chr9 57430846 57431374 -66644798 - RMER15 LTR ERVL -1 574 3 1 1023 300 280 13 0 chr9 57431396 57431471 -66644701 - ID4 SINE ID 0 83 8 1 1023 402 212 50 0 chr9 57431550 57431649 -66644523 - B1F2 SINE Alu -40 109 6 1 1023 471 274 188 7 chr9 57431776 57431930 -66644242 - ID_B1 SINE B4 -42 182 1 1 1023 505 221 73 16 chr9 57432346 57432470 -66643702 + ID_B1 SINE B4 92 222 -2 1 1023 653 219 14 14 chr9 57432472 57432620 -66643552 + B1_Mur2 SINE Alu 1 148 -1 1 1023 225 0 0 0 chr9 57432632 57432657 -66643515 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1 1023 347 362 20 7 chr9 57432838 57432991 -66643181 - RSINE1 SINE B4 0 165 11 1 1023 332 199 260 82 chr9 57433003 57433084 -66643088 - L1M4 LINE L1 -1019 5121 5028 1 1023 528 225 65 7 chr9 57433084 57433223 -66642949 - B1F2 SINE Alu -1 148 2 1 1023 332 199 260 82 chr9 57433223 57433349 -66642823 - L1M4 LINE L1 -1113 5027 4877 1 1023 1316 77 38 6 chr9 57433362 57433545 -66642627 - B2_Mm2 SINE B2 -6 189 1 1 1023 471 281 104 0 chr9 57433598 57433733 -66642439 - RSINE1 SINE B4 -15 150 2 1 1023 730 191 0 0 chr9 57433768 57433894 -66642278 + B3 SINE B2 5 130 -86 1 1023 1123 76 38 0 chr9 57433941 57434098 -66642074 - B2_Mm2 SINE B2 -6 189 27 1 1023 1307 101 11 0 chr9 57434119 57434308 -66641864 - B2_Mm1t SINE B2 -2 191 1 1 1023 334 219 171 0 chr9 57434310 57434433 -66641739 - L1M4 LINE L1 -1286 4860 4717 1 1023 193 271 41 41 chr9 57434435 57434508 -66641664 - MIRm SINE MIR -120 156 84 1 1023 510 174 261 0 chr9 57436822 57436937 -66639235 + B1_Mus2 SINE Alu 2 146 -1 1 1023 323 243 0 0 chr9 57436956 57437030 -66639142 - RSINE1 SINE B4 -27 138 65 1 1023 369 43 0 0 chr9 57438332 57438379 -66637793 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1023 383 58 0 0 chr9 57438393 57438449 -66637723 - B1_Mm SINE Alu -9 138 53 1 1023 878 109 7 0 chr9 57443690 57443827 -66632345 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 1 1023 422 18 18 0 chr9 57443828 57443883 -66632289 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1023 252 0 0 0 chr9 57445438 57445466 -66630706 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1023 218 208 0 59 chr9 57447832 57447883 -66628289 + B4A SINE B4 84 131 -161 1 1023 270 192 385 0 chr9 57447845 57447923 -66628249 + PB1D10 SINE Alu 9 116 -1 1 1023 905 185 126 11 chr9 57447923 57448114 -66628058 + B3 SINE B2 1 213 -3 1 1023 806 269 39 0 chr9 57448141 57448349 -66627823 + ID_B1 SINE B4 9 224 0 1 1023 216 204 74 0 chr9 57448379 57448433 -66627739 + GA-rich Low_complexity Low_complexity 3 60 0 1 1023 307 187 49 74 chr9 57448637 57448718 -66627454 + ID4 SINE ID 1 79 -4 1 1023 236 294 128 0 chr9 57449454 57449556 -66626616 - MIR3 SINE MIR -16 192 78 1 1023 423 0 0 0 chr9 57449830 57449877 -66626295 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1023 313 271 91 51 chr9 57450605 57450630 -66625542 - B2_Mm1a SINE B2 -8 185 159 1 1023 423 0 0 0 chr9 57450630 57450677 -66625495 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1023 708 218 14 7 chr9 57450677 57450826 -66625346 - B3A SINE B2 -35 158 4 1 1023 664 173 54 67 chr9 57450869 57451018 -66625154 + B1_Mur3 SINE Alu 2 148 -1 1 1023 793 193 7 33 chr9 57451044 57451182 -66624990 + B1_Mur1 SINE Alu 1 138 -11 1 1023 236 30 30 0 chr9 57451182 57451215 -66624957 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1023 793 193 7 33 chr9 57451215 57451226 -66624946 + B1_Mur1 SINE Alu 139 146 -3 1 1023 397 289 0 0 chr9 57451228 57451311 -66624861 + ID_B1 SINE B4 90 172 -52 1 1023 329 319 31 21 chr9 57451311 57451324 -66624848 + PB1D10 SINE Alu 9 105 -12 1 1023 306 326 26 77 chr9 57451330 57451486 -66624686 - MIRb SINE MIR -120 148 1 1 1023 288 0 0 0 chr9 57452372 57452404 -66623768 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1 1023 633 295 42 54 chr9 57453084 57453347 -66622825 - MIR SINE MIR -1 261 6 1 1023 360 274 40 40 chr9 57455302 57455401 -66620771 - PB1D10 SINE Alu 0 117 19 1 1023 189 0 0 0 chr9 57455506 57455527 -66620645 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1023 263 308 60 23 chr9 57455529 57455662 -66620510 + L2c LINE L2 3029 3166 -221 1 1023 1468 74 16 0 chr9 57456394 57456583 -66619589 + B2_Mm1t SINE B2 1 192 -1 1 1023 199 79 0 50 chr9 57456583 57456623 -66619549 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1023 600 261 15 7 chr9 57457570 57457705 -66618467 + B4A SINE B4 1 136 -156 1 1023 245 257 24 98 chr9 57459187 57459269 -66616903 + RSINE1 SINE B4 66 141 -24 1 1023 443 18 0 18 chr9 57459269 57459326 -66616846 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1023 441 0 0 0 chr9 57459326 57459374 -66616798 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1023 476 212 37 39 chr9 57460078 57460201 -66615971 - PB1D9 SINE Alu -16 131 11 1 1023 659 254 5 68 chr9 57461006 57461196 -66614976 - ID_B1 SINE B4 0 224 47 1 1023 486 0 0 0 chr9 57462316 57462370 -66613802 + (TCCC)n Simple_repeat Simple_repeat 2 55 0 1 1023 572 303 33 27 chr9 57462653 57462836 -66613336 + MIR SINE MIR 78 261 -1 1 1023 234 62 0 0 chr9 57463328 57463360 -66612812 + (GGGTG)n Simple_repeat Simple_repeat 1 32 0 1 1023 1082 226 0 0 chr9 57464169 57464377 -66611795 + ID_B1 SINE B4 1 208 -16 1 1023 695 210 40 70 chr9 57464379 57464579 -66611593 + B4A SINE B4 1 194 -98 1 1023 514 258 8 38 chr9 57464579 57464712 -66611460 + B4A SINE B4 86 214 -78 1 1023 399 127 0 0 chr9 57464727 57464790 -66611382 + (TCCC)n Simple_repeat Simple_repeat 4 66 0 1 1023 539 170 64 0 chr9 57464793 57464887 -66611285 + B3 SINE B2 31 130 -86 1 1023 360 0 0 0 chr9 57464913 57464953 -66611219 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 1023 659 125 152 0 chr9 57465025 57465137 -66611035 + B1_Mus1 SINE Alu 1 129 -19 1 1023 429 20 0 0 chr9 57465237 57465287 -66610885 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1023 315 161 0 0 chr9 57465291 57465347 -66610825 + (CACCAT)n Simple_repeat Simple_repeat 6 61 0 1 1023 307 274 23 197 chr9 57465932 57466002 -66610170 - ID_B1 SINE B4 -42 182 123 1 1023 1376 94 16 0 chr9 57466002 57466194 -66609978 - B2_Mm2 SINE B2 0 195 1 1 1023 307 274 23 197 chr9 57466194 57466255 -66609917 - ID_B1 SINE B4 -102 122 74 1 1023 279 250 15 15 chr9 57466260 57466325 -66609847 - ID4_ SINE ID -17 66 2 1 1023 212 0 36 0 chr9 57466329 57466357 -66609815 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1023 370 63 84 0 chr9 57466357 57466431 -66609741 - B1_Mm SINE Alu -8 139 22 1 1023 369 0 0 0 chr9 57466463 57466504 -66609668 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1023 414 309 27 81 chr9 57466506 57466654 -66609518 - RSINE1 SINE B4 -15 150 11 1 1023 495 194 65 37 chr9 57466659 57466766 -66609406 - PB1D10 SINE Alu -5 112 3 1 1023 234 161 0 35 chr9 57467380 57467438 -66608734 + T-rich Low_complexity Low_complexity 6 61 0 1 1023 1253 20 7 7 chr9 57467438 57467585 -66608587 - B1_Mm SINE Alu 0 147 1 1 1023 198 0 0 0 chr9 57468861 57468883 -66607289 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1023 447 213 73 9 chr9 57469094 57469203 -66606969 + PB1D10 SINE Alu 2 117 0 1 1023 745 102 76 0 chr9 57469239 57469357 -66606815 - B1_Mus2 SINE Alu -1 146 20 1 1023 249 302 109 85 chr9 57469421 57469438 -66606734 + L1MC5 LINE L1 7542 7557 -404 1 1023 1143 68 7 7 chr9 57469438 57469585 -66606587 - B1_Mm SINE Alu 0 147 1 1 1023 249 302 109 85 chr9 57469585 57469722 -66606450 + L1MC5 LINE L1 7558 7695 -266 1 1023 1282 34 0 0 chr9 57469722 57469869 -66606303 - B1_Mm SINE Alu 0 147 1 1 1023 249 302 109 85 chr9 57469869 57470042 -66606130 + L1MC5 LINE L1 7696 7878 -83 1 1023 280 330 0 0 chr9 57470044 57470132 -66606040 - ID_B1 SINE B4 0 224 137 1 1023 794 169 28 21 chr9 57470188 57470333 -66605839 - B1_Mus2 SINE Alu -1 146 1 1 1023 457 255 19 0 chr9 57470355 57470461 -66605711 - B1_Mur1 SINE Alu -3 146 39 1 1023 318 211 113 0 chr9 57470486 57470557 -66605615 - ID4 SINE ID -1 82 4 1 1023 564 271 109 20 chr9 57470834 57471120 -66605052 + RMER15 LTR ERVL 39 441 -134 1 1023 302 223 22 104 chr9 57471380 57471515 -66604657 - BC1_Mm scRNA scRNA -14 138 15 1 1023 355 185 31 0 chr9 57471457 57471522 -66604650 - ID SINE ID -150 74 8 1 1023 321 47 0 0 chr9 57471526 57471569 -66604603 + (CCCCG)n Simple_repeat Simple_repeat 5 47 0 1 1023 386 322 107 0 chr9 57471580 57471729 -66604443 - ID_B1 SINE B4 -55 169 5 1 1023 272 318 14 79 chr9 57472034 57472174 -66603998 - ORR1C2 LTR MaLR -165 219 89 1 1023 342 164 45 0 chr9 57472143 57472210 -66603962 - B1_Mur1 SINE Alu -5 144 75 1 1023 337 250 31 20 chr9 57472707 57472805 -66603367 - PB1D7 SINE Alu 0 120 22 1 1023 1242 14 21 0 chr9 57476218 57476362 -66599810 - B1_Mus2 SINE Alu 0 147 1 1 1023 205 204 0 0 chr9 57477697 57477743 -66598429 + MIRc SINE MIR 110 154 -122 1 1023 271 268 0 14 chr9 57480567 57480639 -66595533 + PB1D10 SINE Alu 42 112 -5 1 1023 628 186 25 10 chr9 57480677 57480830 -66595342 + B3 SINE B2 14 176 -22 1 1023 216 67 0 0 chr9 57480831 57480861 -66595311 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1 1023 192 288 137 0 chr9 57481449 57481522 -66594650 - MIRm SINE MIR -107 169 87 1 1023 360 291 73 103 chr9 57481759 57482006 -66594166 - MIRb SINE MIR 0 268 22 1 1023 1232 35 7 0 chr9 57482819 57482963 -66593209 + B1_Mus2 SINE Alu 3 147 0 1 1023 938 281 63 11 chr9 57482985 57483255 -66592917 + B4 SINE B4 5 288 -4 1 1023 437 234 105 68 chr9 57483461 57483594 -66592578 + RSINE1 SINE B4 28 165 0 1 1023 364 140 0 0 chr9 57483697 57483754 -66592418 - B1F2 SINE Alu -92 57 1 1 1023 1136 66 17 221 chr9 57483763 57483998 -66592174 - B2_Mm2 SINE B2 -7 188 2 1 1023 1109 89 7 0 chr9 57484024 57484170 -66592002 - B1_Mus2 SINE Alu 0 147 1 1 1023 360 243 117 0 chr9 57484172 57484275 -66591897 - PB1D10 SINE Alu 0 117 3 1 1023 614 306 13 0 chr9 57484321 57484478 -66591694 - RSINE1 SINE B4 -4 161 3 1 1023 1053 224 15 0 chr9 57484557 57484762 -66591410 + B3 SINE B2 3 210 -6 1 1023 282 309 216 40 chr9 57484851 57485041 -66591131 - ID_B1 SINE B4 0 224 2 1 1023 183 284 26 39 chr9 57485112 57485189 -66590983 + L2b LINE L2 3122 3197 -178 1 1023 225 157 0 38 chr9 57485337 57485390 -66590782 + GA-rich Low_complexity Low_complexity 4 54 0 1 1023 324 70 0 0 chr9 57485982 57486025 -66590147 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1023 417 211 66 15 chr9 57487387 57487503 -66588669 + PB1D7 SINE Alu 11 126 -22 1 1023 189 0 0 0 chr9 57488260 57488281 -66587891 + (GGCTG)n Simple_repeat Simple_repeat 5 25 0 1 1023 210 173 0 88 chr9 57488578 57488635 -66587537 + MIRm SINE MIR 100 151 -125 1 1023 351 211 0 53 chr9 57489565 57489640 -66586532 + PB1D10 SINE Alu 5 75 -42 1 1023 213 39 0 0 chr9 57489655 57489681 -66586491 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1023 266 258 260 24 chr9 57490462 57490589 -66585583 - B4A SINE B4 -44 248 92 1 1023 479 267 0 8 chr9 57490475 57490592 -66585580 - PB1D10 SINE Alu 0 117 2 1 1023 239 300 0 99 chr9 57490493 57490604 -66585568 - MT2B LTR ERVL -346 255 156 1 1023 30 0 0 0 chr9 57493120 57493150 -66583022 + GC_rich Low_complexity Low_complexity 1 30 0 1 1023 22 56 0 0 chr9 57493234 57493270 -66582902 + GC_rich Low_complexity Low_complexity 1 36 0 1 1023 231 167 0 0 chr9 57493748 57493790 -66582382 + CT-rich Low_complexity Low_complexity 1 42 0 1 1023 375 134 0 35 chr9 57493886 57493971 -66582201 + CT-rich Low_complexity Low_complexity 3 84 0 1 1023 780 106 81 0 chr9 57493990 57494113 -66582059 - B1_Mur2 SINE Alu 0 149 17 1 1023 1195 55 7 0 chr9 57494117 57494262 -66581910 + B1_Mus1 SINE Alu 3 148 0 1 1023 412 330 20 51 chr9 57494628 57494823 -66581349 + MIR SINE MIR 74 262 0 1 1023 298 323 44 22 chr9 57495346 57495505 -66580667 + MIRb SINE MIR 35 200 -68 1 1023 381 43 0 0 chr9 57495519 57495566 -66580606 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1023 516 16 0 0 chr9 57495566 57495626 -66580546 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1023 216 0 0 0 chr9 57495626 57495649 -66580523 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1023 236 355 0 0 chr9 57495945 57496007 -66580165 + MIRb SINE MIR 27 88 -180 1 1023 546 16 0 0 chr9 57496012 57496075 -66580097 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1023 1582 41 0 54 chr9 57496780 57496984 -66579188 + B2_Mm1a SINE B2 1 193 0 1 1023 374 278 109 16 chr9 57497021 57497149 -66579023 + RSINE1 SINE B4 13 152 -13 1 1023 1391 100 5 10 chr9 57497193 57497385 -66578787 + B2_Mm2 SINE B2 2 192 -3 1 1023 460 335 13 13 chr9 57497417 57497568 -66578604 + ID_B1 SINE B4 3 153 -71 1 1023 1306 78 0 54 chr9 57497571 57497774 -66578398 + B2_Mm1a SINE B2 1 192 -1 1 1023 1385 69 40 0 chr9 57497796 57497970 -66578202 + B2_Mm2 SINE B2 1 181 -14 1 1023 960 54 8 0 chr9 57497985 57498115 -66578057 - B1_Mm SINE Alu 0 147 17 1 1023 394 227 83 90 chr9 57497987 57498132 -66578040 - B4A SINE B4 -68 224 81 1 1023 385 290 13 80 chr9 57498029 57498179 -66577993 - MT2B LTR ERVL -344 257 118 1 1023 907 246 5 11 chr9 57500010 57500195 -66575977 - ID_B1 SINE B4 -33 191 8 1 1023 195 213 156 21 chr9 57500222 57500318 -66575854 - MIR SINE MIR -89 173 65 2 1023 311 239 0 0 chr9 57500432 57500499 -66575673 - ID4 SINE ID -15 68 2 3 1023 561 239 35 0 chr9 57500569 57500682 -66575490 - RSINE1 SINE B4 -46 119 3 4 1023 297 75 0 0 chr9 57500812 57500852 -66575320 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1023 270 243 0 108 chr9 57502632 57502715 -66573457 - ID4 SINE ID 0 83 10 6 1023 734 189 116 106 chr9 57502738 57502945 -66573227 - B3 SINE B2 0 216 8 7 1023 214 179 0 0 chr9 57502945 57502984 -66573188 - B3 SINE B2 -177 39 1 7 1023 391 236 61 35 chr9 57502984 57503098 -66573074 - B1F SINE Alu -3 146 30 8 1023 660 273 28 0 chr9 57503123 57503266 -66572906 - B1_Mur2 SINE Alu -2 147 1 9 1023 249 288 90 96 chr9 57503266 57503415 -66572757 - YREP_Mm Unknown Unknown -1478 334 187 1 1023 525 205 31 39 chr9 57503301 57503428 -66572744 + ID_B1 SINE B4 99 224 0 1 1023 307 269 133 9 chr9 57503485 57503590 -66572582 - B1F SINE Alu -8 141 24 1 1023 1174 62 0 0 chr9 57504322 57504468 -66571704 - B1_Mus1 SINE Alu 0 148 3 1 1023 388 291 156 21 chr9 57505028 57505214 -66570958 + B3 SINE B2 2 212 -4 1 1023 1388 262 73 28 chr9 57505286 57505722 -66570450 - RMER5 LTR ERV1 -78 456 1 1 1023 561 252 27 34 chr9 57506141 57506289 -66569883 + B1F1 SINE Alu 1 147 -2 1 1023 837 201 0 0 chr9 57506296 57506440 -66569732 + B1_Mur2 SINE Alu 5 148 -1 1 1023 324 279 244 51 chr9 57506486 57506720 -66569452 + B4 SINE B4 3 281 -11 1 1023 204 288 17 0 chr9 57506812 57506871 -66569301 + CT-rich Low_complexity Low_complexity 2 61 0 1 1023 1161 176 48 19 chr9 57506880 57507089 -66569083 - B3 SINE B2 -1 215 1 2 1023 568 279 23 0 chr9 57507397 57507526 -66568646 - B1F1 SINE Alu -17 132 1 2 1023 427 268 32 121 chr9 57507864 57507878 -66568294 + ID_B1 SINE B4 79 135 -89 2 1023 688 195 0 56 chr9 57507878 57508003 -66568169 + B1_Mur1 SINE Alu 10 127 -22 2 1023 427 268 32 121 chr9 57508003 57508021 -66568151 + ID_B1 SINE B4 136 221 -3 2 1023 24 0 0 0 chr9 57508046 57508070 -66568102 + GC_rich Low_complexity Low_complexity 1 24 0 2 1023 282 220 0 17 chr9 57508085 57508145 -66568027 - PB1D9 SINE Alu 0 120 62 2 1023 322 322 6 115 chr9 57508207 57508318 -66567854 - B1F1 SINE Alu -1 148 55 2 1023 863 153 55 97 chr9 57508318 57508535 -66567637 - B3 SINE B2 -7 209 2 2 1023 322 322 6 115 chr9 57508535 57508588 -66567584 - B1F1 SINE Alu -95 54 2 2 1023 393 276 197 49 chr9 57508770 57508846 -66567326 + ID_B1 SINE B4 14 223 -1 2 1023 542 126 159 37 chr9 57508846 57508953 -66567219 + B1_Mur4 SINE Alu 29 148 -2 2 1023 547 42 0 40 chr9 57509066 57509141 -66567031 + B1_Mus2 SINE Alu 76 147 0 3 1023 399 271 58 161 chr9 57509180 57509368 -66566804 + ID_B1 SINE B4 6 168 -56 3 1023 1274 219 133 3 chr9 57509368 57509698 -66566474 + ORR1D1 LTR MaLR 1 373 -1 3 1023 399 271 58 161 chr9 57509698 57509751 -66566421 + ID_B1 SINE B4 169 222 -2 3 1023 247 198 30 50 chr9 57509751 57509800 -66566372 + A-rich Low_complexity Low_complexity 1 50 0 3 1023 1194 69 7 0 chr9 57509800 57509944 -66566228 + B1_Mus2 SINE Alu 2 146 -1 3 1023 247 198 30 50 chr9 57509944 57509995 -66566177 + A-rich Low_complexity Low_complexity 51 98 0 3 1023 744 220 6 45 chr9 57510054 57510211 -66565961 + RSINE1 SINE B4 11 161 -4 3 1023 1597 58 0 0 chr9 57510324 57510515 -66565657 + B2_Mm1a SINE B2 2 192 -1 3 1023 863 166 14 0 chr9 57510568 57510707 -66565465 + B1_Mur4 SINE Alu 1 141 -9 3 1023 294 29 0 0 chr9 57510707 57510742 -66565430 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1023 302 273 9 100 chr9 57510776 57510886 -66565286 + ID_B1 SINE B4 77 176 -48 4 1023 460 200 9 79 chr9 57510789 57510903 -66565269 + PB1D10 SINE Alu 6 111 -6 4 1023 504 297 0 26 chr9 57510917 57511031 -66565141 - RLTR33 LTR ERVK -51 627 517 4 1023 234 0 0 0 chr9 57511035 57511061 -66565111 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4 1023 1193 76 0 6 chr9 57511062 57511221 -66564951 - B2_Mm2 SINE B2 -37 158 1 4 1023 1837 133 130 19 chr9 57511223 57511645 -66564527 - RLTR33 LTR ERVK -146 532 1 4 1023 858 197 45 6 chr9 57511782 57511961 -66564211 + B3 SINE B2 31 216 0 4 1023 930 239 35 5 chr9 57512199 57512401 -66563771 - B3 SINE B2 0 216 9 4 1023 500 158 198 27 chr9 57512416 57512527 -66563645 - B1_Mur1 SINE Alu -1 148 19 4 1023 357 64 0 0 chr9 57512710 57512757 -66563415 - B1_Mus2 SINE Alu -100 47 1 4 1023 1005 22 28 39 chr9 57512787 57513069 -66563103 + (TC)n Simple_repeat Simple_repeat 1 279 0 4 1023 532 289 8 38 chr9 57513182 57513315 -66562857 - ID_B1 SINE B4 -6 218 90 5 1023 261 235 0 147 chr9 57513453 57513548 -66562624 + MT2B2 LTR ERVL 160 240 -344 5 1023 460 232 0 57 chr9 57513484 57513589 -66562583 + PB1D7 SINE Alu 22 120 0 5 1023 21 36 0 0 chr9 57513615 57513643 -66562529 + AT_rich Low_complexity Low_complexity 1 28 0 5 1023 245 333 37 0 chr9 57513648 57513729 -66562443 + B1F SINE Alu 7 90 -59 5 1023 631 250 0 0 chr9 57513814 57513938 -66562234 + B1_Mur3 SINE Alu 12 135 -14 5 1023 539 260 65 0 chr9 57513972 57514095 -66562077 + ID_B1 SINE B4 92 222 -2 5 1023 552 286 40 33 chr9 57514126 57514278 -66561894 + RSINE1 SINE B4 11 163 -2 5 1023 1190 54 0 13 chr9 57514872 57515021 -66561151 + B1_Mus1 SINE Alu 2 148 0 5 1023 591 15 0 0 chr9 57516002 57516070 -66560102 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1023 347 281 22 0 chr9 57516091 57516180 -66559992 - MIRb SINE MIR -55 213 123 6 1023 539 221 29 0 chr9 57517924 57518028 -66558144 + PB1D9 SINE Alu 3 109 -11 6 1023 225 83 0 0 chr9 57518028 57518064 -66558108 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1023 571 101 0 91 chr9 57518097 57518294 -66557878 + (CCAA)n Simple_repeat Simple_repeat 2 180 0 6 1023 637 123 35 12 chr9 57518311 57518484 -66557688 + (CCAA)n Simple_repeat Simple_repeat 4 180 0 6 1023 208 121 0 0 chr9 57518624 57518657 -66557515 + (CAA)n Simple_repeat Simple_repeat 2 34 0 6 1023 1135 193 64 0 chr9 57518662 57518864 -66557308 - B3 SINE B2 0 216 2 6 1023 581 252 73 30 chr9 57518882 57519046 -66557126 - MTEa LTR MaLR -206 173 3 6 1023 1151 255 221 8 chr9 57519048 57519582 -66556590 + Lx8 LINE L1 6587 7234 -239 6 1023 332 319 11 0 chr9 57519582 57519673 -66556499 + RMER15 LTR ERVL 371 462 -113 6 1023 183 80 0 0 chr9 57520386 57520411 -66555761 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 1023 599 200 96 0 chr9 57520422 57520547 -66555625 - B3A SINE B2 -56 142 6 7 1023 461 234 131 0 chr9 57520596 57520733 -66555439 - Lx8 LINE L1 -432 7041 6887 7 1023 866 155 21 8 chr9 57520980 57521125 -66555047 + B1_Mur1 SINE Alu 1 140 -9 7 1023 209 241 17 0 chr9 57521509 57521567 -66554605 + T-rich Low_complexity Low_complexity 3 61 0 7 1023 794 239 21 59 chr9 57521579 57521766 -66554406 - B3A SINE B2 -16 182 3 7 1023 414 0 0 0 chr9 57521766 57521812 -66554360 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 7 1023 1189 57 7 0 chr9 57521814 57521955 -66554217 - B1_Mus1 SINE Alu -6 142 1 7 1023 195 114 0 0 chr9 57522228 57522263 -66553909 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 7 1023 3013 58 50 0 chr9 57522339 57522720 -66553452 - MTB LTR MaLR 0 400 1 7 1023 574 259 20 20 chr9 57522761 57522911 -66553261 - MTEa LTR MaLR 0 379 230 7 1023 433 208 8 53 chr9 57522917 57523049 -66553123 - L1M4 LINE L1 -589 5585 5460 8 1023 1888 196 46 6 chr9 57523051 57523400 -66552772 + MTD LTR MaLR 1 363 -56 8 1023 533 216 0 0 chr9 57523359 57523447 -66552725 - PB1D9 SINE Alu -32 88 1 8 1023 569 225 18 9 chr9 57523460 57523572 -66552600 - PB1 SINE Alu -10 117 5 8 1023 322 235 0 0 chr9 57523574 57523655 -66552517 - L1M4 LINE L1 -739 5441 5361 8 1023 1151 209 0 24 chr9 57523675 57523886 -66552286 - B3 SINE B2 -10 206 1 8 1023 298 294 97 12 chr9 57523889 57524054 -66552118 - L1M4 LINE L1 -780 5366 5188 8 1023 275 19 57 19 chr9 57524056 57524109 -66552063 + (TTGTG)n Simple_repeat Simple_repeat 5 59 0 8 1023 886 271 75 16 chr9 57524163 57524418 -66551754 - B4A SINE B4 -22 270 1 8 1023 485 211 65 0 chr9 57524687 57524810 -66551362 + L1MB8 LINE L1 5842 5972 -206 8 1023 22 0 0 0 chr9 57524967 57524989 -66551183 + AT_rich Low_complexity Low_complexity 1 22 0 8 1023 724 239 62 38 chr9 57525427 57525636 -66550536 - ID_B1 SINE B4 -8 216 3 8 1023 263 183 21 31 chr9 57525698 57525794 -66550378 + Lx6 LINE L1 7340 7434 -26 9 1023 549 301 8 0 chr9 57525857 57525990 -66550182 - RSINE1 SINE B4 -29 136 3 9 1023 608 83 9 27 chr9 57526366 57526478 -66549694 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 9 1023 512 219 68 38 chr9 57526478 57526611 -66549561 - B1F SINE Alu -1 148 12 9 1023 354 108 0 0 chr9 57528252 57528317 -66547855 + (TC)n Simple_repeat Simple_repeat 2 66 0 9 1023 523 261 0 9 chr9 57528376 57528488 -66547684 + PB1D7 SINE Alu 1 111 -9 9 1023 757 206 22 0 chr9 57531044 57531180 -66544992 + RSINE1 SINE B4 3 141 -24 9 1023 258 56 0 0 chr9 57531184 57531220 -66544952 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 9 1023 228 111 0 0 chr9 57531223 57531259 -66544913 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1023 234 206 48 0 chr9 57531865 57531928 -66544244 - MTEa LTR MaLR 0 379 314 9 1023 268 83 42 0 chr9 57531930 57531978 -66544194 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 1 1023 1206 257 80 0 chr9 57531979 57532093 -66544079 - MTEa LTR MaLR -55 324 202 9 1023 369 0 0 0 chr9 57532093 57532134 -66544038 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1023 234 0 0 0 chr9 57532134 57532159 -66544013 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1023 1206 257 80 0 chr9 57532159 57532343 -66543829 - MTEa LTR MaLR -178 201 3 9 1023 261 83 0 0 chr9 57532379 57532415 -66543757 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1023 635 154 111 0 chr9 57532612 57532729 -66543443 + B3 SINE B2 1 130 -86 1 1023 933 43 0 8 chr9 57532755 57532872 -66543300 + B1_Mus1 SINE Alu 31 146 -2 1 1023 820 201 20 14 chr9 57533106 57533252 -66542920 + B1_Mur2 SINE Alu 2 148 -1 1 1023 1853 171 52 35 chr9 57533443 57533812 -66542360 - ORR1C2 LTR MaLR -5 379 5 1 1023 273 265 9 38 chr9 57533812 57533918 -66542254 + L1MC4 LINE L1 7800 7902 -140 1 1023 628 209 163 0 chr9 57533930 57534059 -66542113 + RSINE1 SINE B4 2 151 -14 1 1023 426 156 69 3 chr9 57534159 57534254 -66541918 + B1_Mur4 SINE Alu 4 107 -43 1 1023 432 0 0 0 chr9 57534265 57534313 -66541859 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1023 694 203 15 8 chr9 57534544 57534678 -66541494 - B1_Mur1 SINE Alu -2 147 13 1 1023 3020 155 158 170 chr9 57534966 57535983 -66540189 + RMER1B Other Other 60 1064 -2 1 1023 1037 200 28 28 chr9 57535992 57536203 -66539969 - B3 SINE B2 -5 211 1 1 1023 578 282 135 73 chr9 57536204 57536640 -66539532 - L1MC3 LINE L1 -194 7591 7129 1 1023 987 252 14 0 chr9 57536707 57536925 -66539247 + ID_B1 SINE B4 2 222 -2 1 1023 225 159 0 0 chr9 57537094 57537138 -66539034 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1023 317 206 0 10 chr9 57537150 57537248 -66538924 + GA-rich Low_complexity Low_complexity 1 97 0 1 1023 354 315 13 12 chr9 57537674 57537803 -66538369 - PB1D10 SINE Alu -16 133 1 1 1023 296 297 118 8 chr9 57537845 57537964 -66538208 - L1ME3A LINE L1 -111 6062 5931 1 1023 594 259 85 15 chr9 57537975 57538175 -66537997 - B3 SINE B2 0 216 3 1 1023 1312 87 21 11 chr9 57538181 57538367 -66537805 - B2_Mm2 SINE B2 -7 188 1 1 1023 641 223 69 41 chr9 57538390 57538535 -66537637 - B1_Mur1 SINE Alu 0 149 1 1 1023 695 228 15 0 chr9 57538543 57538679 -66537493 - B1_Mur2 SINE Alu -10 139 2 1 1023 32 43 0 0 chr9 57538683 57538729 -66537443 + AT_rich Low_complexity Low_complexity 1 46 0 1 1023 2335 125 59 18 chr9 57538732 57539123 -66537049 - MTB_Mm LTR MaLR 0 407 1 1 1023 771 216 175 0 chr9 57539123 57539294 -66536878 - B3 SINE B2 -14 202 2 1 1023 824 183 0 7 chr9 57539294 57539437 -66536735 - B3 SINE B2 0 216 75 1 1023 473 267 0 9 chr9 57539499 57539605 -66536567 - PB1D9 SINE Alu -2 118 14 1 1023 639 267 20 7 chr9 57539608 57539755 -66536417 - B4A SINE B4 -61 231 83 1 1023 248 333 103 28 chr9 57539846 57539991 -66536181 - B4 SINE B4 -23 269 114 1 127 782 236 99 0 chr9 57540420 57540611 -66535561 + ID_B1 SINE B4 2 211 -13 1 1024 964 151 6 6 chr9 57541200 57541380 -66534792 + CT-rich Low_complexity Low_complexity 1 180 0 1 1024 183 80 0 0 chr9 57541386 57541411 -66534761 + (TCC)n Simple_repeat Simple_repeat 3 27 0 1 1024 215 209 0 23 chr9 57542544 57542588 -66533584 + CT-rich Low_complexity Low_complexity 4 46 0 1 1024 364 227 149 32 chr9 57542617 57542738 -66533434 - B1F1 SINE Alu -7 142 2 1 1024 345 342 187 19 chr9 57543561 57543877 -66532295 + L2a LINE L2 3056 3424 -2 1 1024 315 0 0 0 chr9 57545535 57545570 -66530602 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 1 1024 252 0 0 0 chr9 57545632 57545660 -66530512 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1024 1058 97 7 0 chr9 57546271 57546416 -66529756 - B1_Mur4 SINE Alu 0 150 5 1 1024 262 327 41 66 chr9 57547395 57547516 -66528656 + MIR SINE MIR 18 135 -127 1 1024 371 21 0 20 chr9 57547552 57547601 -66528571 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1024 877 105 14 7 chr9 57548914 57549058 -66527114 + (TTTC)n Simple_repeat Simple_repeat 3 147 0 1 1024 1222 91 28 11 chr9 57549058 57549235 -66526937 - B2_Mm2 SINE B2 -15 180 1 1 1024 428 290 43 58 chr9 57551277 57551416 -66524756 - ID_B1 SINE B4 -8 216 80 1 1024 324 0 0 0 chr9 57552028 57552064 -66524108 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1024 2806 150 21 118 chr9 57552065 57552676 -66523496 - RMER1B Other Other -23 1043 492 1 1024 535 285 192 0 chr9 57553033 57553205 -66522967 + ID_B1 SINE B4 4 208 -16 1 1024 3766 70 2 15 chr9 57553242 57553723 -66522449 + MT2C_Mm LTR ERVL 1 475 0 1 1024 264 265 204 7 chr9 57553743 57553895 -66522277 + L1MB8 LINE L1 5925 6106 -72 1 1024 633 301 7 0 chr9 57553928 57554074 -66522098 + B3A SINE B2 15 161 -37 1 1024 363 258 78 31 chr9 57554209 57554337 -66521835 + B4A SINE B4 70 203 -89 1 1024 779 175 0 0 chr9 57554235 57554361 -66521811 + B1_Mus2 SINE Alu 10 135 -12 1 1024 335 293 88 137 chr9 57554392 57554677 -66521495 + L1MC5 LINE L1 6645 6915 -1046 1 1024 304 266 102 41 chr9 57554683 57554781 -66521391 + B1F2 SINE Alu 5 108 -9 1 1024 681 188 311 6 chr9 57554859 57555020 -66521152 - B3 SINE B2 -6 210 1 1 1024 235 173 18 71 chr9 57555076 57555132 -66521040 - MTC-int LTR MaLR -872 1091 1039 1 1024 321 193 240 116 chr9 57555099 57555228 -66520944 + ID_B1 SINE B4 74 218 -6 1 1024 535 128 283 35 chr9 57555121 57555234 -66520938 + B1_Mus1 SINE Alu 8 148 0 1 1024 1653 164 97 95 chr9 57555245 57555430 -66520742 - MTC-int LTR MaLR -844 414 247 1 1024 1274 34 0 0 chr9 57555430 57555577 -66520595 - B1_Mus2 SINE Alu 0 147 1 1 1024 1653 164 97 95 chr9 57555577 57555802 -66520370 - MTC-int LTR MaLR -1012 246 3 1 1024 2024 171 89 18 chr9 57555802 57556195 -66519977 - MTC LTR MaLR 0 421 1 1 1024 546 124 0 0 chr9 57556638 57556727 -66519445 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 1024 289 320 124 59 chr9 57557377 57557465 -66518707 - MT2B LTR ERVL -235 366 201 1 1024 496 181 0 0 chr9 57557465 57557548 -66518624 - B1_Mur2 SINE Alu -46 103 21 1 1024 289 320 124 59 chr9 57557548 57557563 -66518609 - MT2B LTR ERVL -235 200 169 1 1024 263 290 16 0 chr9 57557624 57557686 -66518486 - PB1D7 SINE Alu -57 63 1 1 1024 279 279 124 0 chr9 57557859 57557993 -66518179 + L1ME3A LINE L1 5818 5966 -198 1 1024 1223 48 7 0 chr9 57558020 57558167 -66518005 - B1_Mus1 SINE Alu 0 148 1 1 1024 324 298 85 0 chr9 57558259 57558353 -66517819 + PB1D7 SINE Alu 6 107 -13 1 1024 379 270 104 139 chr9 57558463 57558539 -66517633 + ID SINE ID 4 79 -145 1 1024 297 0 0 0 chr9 57558539 57558572 -66517600 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1024 379 270 104 139 chr9 57558572 57558586 -66517586 + ID SINE ID 80 87 -137 1 1024 677 161 76 0 chr9 57558586 57558704 -66517468 + B1_Mur3 SINE Alu 1 127 -22 1 1024 417 20 0 0 chr9 57558824 57558874 -66517298 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1024 255 299 0 61 chr9 57558894 57558976 -66517196 - ID4_ SINE ID -2 81 5 1 1024 495 278 7 7 chr9 57559000 57559145 -66517027 - B1_Mur3 SINE Alu 0 149 5 1 1024 1222 59 87 12 chr9 57559364 57559536 -66516636 + B2_Mm2 SINE B2 2 186 -9 1 1024 202 143 0 39 chr9 57559584 57559617 -66516555 + T-rich Low_complexity Low_complexity 24 54 0 1 1024 1151 62 14 0 chr9 57559617 57559762 -66516410 - B1_Mus2 SINE Alu 0 147 1 1 1024 202 143 0 39 chr9 57559762 57559779 -66516393 + T-rich Low_complexity Low_complexity 7 23 0 1 1024 517 175 167 0 chr9 57559933 57560059 -66516113 - B1_Mur4 SINE Alu -2 148 2 1 1024 25 71 0 14 chr9 57560089 57560123 -66516049 + AT_rich Low_complexity Low_complexity 1 34 0 1 1024 914 204 86 5 chr9 57560123 57560320 -66515852 - B3 SINE B2 -3 213 1 1 1024 25 71 0 14 chr9 57560320 57560356 -66515816 + AT_rich Low_complexity Low_complexity 1 36 0 1 1024 251 62 0 0 chr9 57560378 57560410 -66515762 + B1_Mur4 SINE Alu 110 141 -9 1 1024 291 28 0 0 chr9 57560410 57560446 -66515726 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1024 764 200 0 0 chr9 57560591 57560716 -66515456 - B1_Mur4 SINE Alu -22 128 4 1 1024 388 221 0 150 chr9 57560604 57560737 -66515435 - MT2B LTR ERVL -337 264 152 1 1024 341 228 98 0 chr9 57560784 57560876 -66515296 - B1_Mur2 SINE Alu 0 149 49 1 1024 537 267 104 0 chr9 57560894 57561029 -66515143 + B1_Mur1 SINE Alu 1 149 0 1 1024 21 0 0 0 chr9 57561694 57561715 -66514457 + AT_rich Low_complexity Low_complexity 1 21 0 1 1024 296 93 0 0 chr9 57561733 57561787 -66514385 - B2_Mm1t SINE B2 -3 190 137 1 1024 588 281 62 12 chr9 57561882 57562044 -66514128 - RCHARR1 DNA MER1_type -796 178 9 1 1024 197 311 26 78 chr9 57562090 57562205 -66513967 + L2c LINE L2 2355 2463 -956 1 1024 465 241 201 6 chr9 57562440 57562604 -66513568 - B3 SINE B2 -19 197 2 1 1024 471 208 19 56 chr9 57562615 57562722 -66513450 - B1_Mur1 SINE Alu -6 143 41 1 1024 1170 62 7 0 chr9 57562774 57562920 -66513252 - B1_Mus1 SINE Alu 0 148 2 1 1024 383 308 51 0 chr9 57563064 57563181 -66512991 - B1F2 SINE Alu -26 123 1 1 1024 267 328 16 49 chr9 57563358 57563480 -66512692 + L2c LINE L2 3270 3387 0 1 1024 270 295 26 0 chr9 57564508 57564586 -66511586 - ID4 SINE ID -1 82 3 1 1024 611 246 23 0 chr9 57564634 57564764 -66511408 - RSINE1 SINE B4 -31 134 2 1 1024 767 296 14 5 chr9 57565018 57565232 -66510940 + B3 SINE B2 1 216 0 1 1024 678 239 63 111 chr9 57565257 57565303 -66510869 + B3A SINE B2 2 36 -162 1 1024 1704 21 0 5 chr9 57565303 57565497 -66510675 - B2_Mm1a SINE B2 0 193 1 2 1024 678 239 63 111 chr9 57565497 57565657 -66510515 + B3A SINE B2 37 198 0 1 1024 2058 185 51 24 chr9 57565686 57566096 -66510076 - MTC LTR MaLR 0 421 1 2 1024 441 235 124 32 chr9 57566406 57566591 -66509581 + B3 SINE B2 14 215 -1 2 1024 1098 96 7 0 chr9 57566889 57567035 -66509137 + B1_Mus2 SINE Alu 1 147 0 2 1024 342 247 247 0 chr9 57567140 57567233 -66508939 - B3 SINE B2 -98 118 3 2 1024 567 324 66 4 chr9 57567235 57567492 -66508680 - L1MC3 LINE L1 -310 7475 7203 2 1024 705 231 0 7 chr9 57567601 57567749 -66508423 - B1_Mur1 SINE Alu -2 147 1 2 1024 618 282 119 23 chr9 57567862 57568032 -66508140 - B4A SINE B4 -6 286 108 2 1024 428 51 17 0 chr9 57568032 57568091 -66508081 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1024 618 282 119 23 chr9 57568091 57568181 -66507991 - B4A SINE B4 -185 107 2 2 1024 451 244 270 9 chr9 57568262 57568541 -66507631 - L1MC3 LINE L1 -1026 6969 6583 2 1024 1578 224 45 28 chr9 57568600 57568959 -66507213 + MTD LTR MaLR 1 365 -54 2 1024 449 222 131 31 chr9 57569008 57569138 -66507034 - B3 SINE B2 -6 210 68 2 1024 359 237 174 8 chr9 57569157 57569289 -66506883 - L1MC3 LINE L1 -1239 6546 6393 2 1024 884 248 179 21 chr9 57569593 57570017 -66506155 - L1MC3 LINE L1 -1391 6394 5904 2 1024 951 193 22 11 chr9 57570034 57570212 -66505960 - MTC LTR MaLR 0 421 242 2 1024 706 231 37 24 chr9 57570298 57570462 -66505710 + ID_B1 SINE B4 4 169 -55 2 1024 26 0 0 0 chr9 57570481 57570507 -66505665 + AT_rich Low_complexity Low_complexity 1 26 0 2 1024 198 272 52 52 chr9 57570585 57570682 -66505490 + L3 LINE CR1 79 175 -4314 2 1024 352 296 46 9 chr9 57570714 57570823 -66505349 + B3A SINE B2 83 195 -3 2 1024 1365 100 21 0 chr9 57572158 57572348 -66503824 - B2_Mm2 SINE B2 -1 194 1 2 1024 333 354 95 9 chr9 57572426 57572637 -66503535 - Charlie7 DNA MER1_type -2383 229 1 2 1024 829 211 164 8 chr9 57572874 57573118 -66503054 + B4A SINE B4 2 283 -9 2 1024 34 24 0 0 chr9 57573472 57573513 -66502659 + AT_rich Low_complexity Low_complexity 1 41 0 2 1024 320 215 150 70 chr9 57573623 57573723 -66502449 - PB1D10 SINE Alu 0 117 10 2 1024 232 246 18 0 chr9 57573788 57573845 -66502327 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1024 521 320 136 33 chr9 57573873 57574115 -66502057 - B4A SINE B4 -25 267 1 2 1024 665 202 111 18 chr9 57575833 57576004 -66500168 - B3 SINE B2 -5 211 25 2 1024 673 136 0 69 chr9 57576467 57576656 -66499516 + CT-rich Low_complexity Low_complexity 1 176 0 2 1024 551 53 0 13 chr9 57576682 57576758 -66499414 + (CCCCCT)n Simple_repeat Simple_repeat 1 75 0 2 1024 738 152 113 8 chr9 57576762 57576895 -66499277 - B1_Mus1 SINE Alu 0 148 2 2 1024 886 158 13 40 chr9 57578006 57578158 -66498014 + B1_Mur3 SINE Alu 1 148 -1 2 1024 239 329 14 0 chr9 57578187 57578257 -66497915 + ID4 SINE ID 2 72 -11 2 1024 302 136 383 0 chr9 57578657 57578751 -66497421 - B2_Mm2 SINE B2 -2 193 64 2 1024 1199 107 0 0 chr9 57578804 57578972 -66497200 - B2_Mm2 SINE B2 -26 169 2 2 1024 24 0 0 0 chr9 57578976 57579000 -66497172 + AT_rich Low_complexity Low_complexity 1 24 0 2 1024 515 236 164 0 chr9 57579022 57579162 -66497010 - RSINE1 SINE B4 0 165 3 2 1024 2407 164 105 8 chr9 57579820 57580288 -66495884 - RMER20A LTR ERVK -3 513 1 2 1024 225 0 0 0 chr9 57580858 57580883 -66495289 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1024 392 281 127 69 chr9 57580974 57581265 -66494907 - L1MC4 LINE L1 -43 7999 7692 2 1024 261 321 35 18 chr9 57581295 57581409 -66494763 - PB1D10 SINE Alu -1 116 1 2 1024 233 228 235 9 chr9 57581497 57581612 -66494560 - RSINE1 SINE B4 -22 143 3 2 1024 363 237 50 42 chr9 57581624 57581743 -66494429 - PB1D9 SINE Alu 0 120 1 2 1024 689 224 14 27 chr9 57581884 57582031 -66494141 - B1_Mur2 SINE Alu 0 149 5 2 1024 356 313 265 13 chr9 57582041 57582271 -66493901 - L1MC4 LINE L1 -453 7589 7302 2 1024 23 33 0 0 chr9 57582339 57582369 -66493803 + AT_rich Low_complexity Low_complexity 1 30 0 2 1024 2243 219 70 38 chr9 57582401 57582957 -66493215 - Lx8 LINE L1 -360 7113 6540 2 1024 1261 86 0 17 chr9 57583067 57583227 -66492945 + B2_Mm2 SINE B2 1 157 -38 2 1024 189 0 0 0 chr9 57583227 57583248 -66492924 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2 1024 1261 86 0 17 chr9 57583248 57583264 -66492908 + B2_Mm2 SINE B2 158 173 -22 2 1024 668 172 133 0 chr9 57583277 57583405 -66492767 + B1_Mur4 SINE Alu 1 145 -5 2 1024 428 330 0 9 chr9 57583421 57583534 -66492638 + RSINE1 SINE B4 46 157 -8 2 1024 25 31 0 0 chr9 57583536 57583568 -66492604 + AT_rich Low_complexity Low_complexity 1 32 0 2 1024 767 182 88 83 chr9 57586011 57586215 -66489957 - B3 SINE B2 -10 206 2 2 1024 869 206 51 0 chr9 57586909 57587084 -66489088 - URR1B DNA MER1_type -1 224 41 2 1024 653 175 25 0 chr9 57587227 57587347 -66488825 - B1_Mur4 SINE Alu -23 127 5 2 1024 771 271 36 36 chr9 57587379 57587601 -66488571 + ID_B1 SINE B4 3 224 0 2 1024 393 283 16 66 chr9 57588733 57588854 -66487318 - PB1D10 SINE Alu -1 116 2 2 1024 898 97 13 82 chr9 57588897 57588944 -66487228 - B1_Mur4 SINE Alu -2 148 105 2 1024 1988 129 178 19 chr9 57588944 57589315 -66486857 - RLTR23 LTR ERV1 0 430 1 2 1024 898 97 13 82 chr9 57589315 57589425 -66486747 - B1_Mur4 SINE Alu -46 104 2 2 1024 251 257 16 148 chr9 57589317 57589445 -66486727 - MT2B LTR ERVL -343 258 148 2 1024 224 337 46 46 chr9 57589521 57589695 -66486477 - MIRb SINE MIR -31 237 64 2 1024 1066 160 130 0 chr9 57589841 57590041 -66486131 - URR1A DNA MER1_type 0 226 1 2 1024 464 237 10 10 chr9 57590648 57590746 -66485426 + RMER1B Other Other 617 714 -352 2 1024 4112 202 230 19 chr9 57590880 57591979 -66484193 + RMER1C Other Other 12 1342 0 2 1024 391 304 22 0 chr9 57592796 57592888 -66483284 + PB1D10 SINE Alu 9 102 -15 2 1024 282 56 0 0 chr9 57592895 57592931 -66483241 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1024 531 69 0 0 chr9 57592988 57593060 -66483112 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1024 703 174 83 0 chr9 57593255 57593387 -66482785 + B1_Mur2 SINE Alu 1 143 -6 2 1024 185 275 182 8 chr9 57593455 57593576 -66482596 - L2 LINE L2 -453 2966 2825 2 1024 467 213 6 14 chr9 57593598 57593706 -66482466 - B1_Mur1 SINE Alu -5 143 35 2 1024 716 201 197 22 chr9 57593977 57594160 -66482012 + B3 SINE B2 2 216 0 2 1024 256 248 93 28 chr9 57594481 57594589 -66481583 - L2 LINE L2 -1385 2034 1920 2 1024 1311 108 132 126 chr9 57594851 57595169 -66481003 - ORR1A4 LTR MaLR -8 321 2 2 1024 386 221 200 30 chr9 57595434 57595569 -66480603 - RSINE1 SINE B4 -3 162 5 2 1024 697 191 301 0 chr9 57598168 57598341 -66477831 - URR1B DNA MER1_type 0 225 1 2 1024 347 245 67 19 chr9 57600725 57600829 -66475343 - PB1D10 SINE Alu -8 109 1 2 1024 1075 105 49 22 chr9 57600830 57601015 -66475157 - B2_Mm2 SINE B2 -5 190 1 2 1024 225 0 0 0 chr9 57603972 57603997 -66472175 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1024 21 0 0 0 chr9 57604095 57604116 -66472056 + AT_rich Low_complexity Low_complexity 1 21 0 2 1024 1151 91 5 78 chr9 57604116 57604307 -66471865 - B2_Mm2 SINE B2 -14 181 5 2 1024 1729 21 0 0 chr9 57604354 57604547 -66471625 + B2_Mm1a SINE B2 1 193 0 2 1024 1188 30 0 0 chr9 57604550 57604685 -66471487 - B1_Mus1 SINE Alu -13 135 1 2 1024 326 205 115 0 chr9 57607916 57607994 -66468178 + PB1D10 SINE Alu 30 116 -1 2 1024 314 250 24 48 chr9 57608005 57608089 -66468083 + ID4_ SINE ID 1 82 -1 2 1024 391 284 118 38 chr9 57611210 57611422 -66464750 + MIRb SINE MIR 20 248 -20 2 1024 351 317 87 0 chr9 57611525 57611629 -66464543 + MIRc SINE MIR 43 155 -113 2 1024 290 28 0 0 chr9 57615218 57615254 -66460918 - U2 snRNA snRNA -152 36 1 2 1024 1033 53 0 0 chr9 57615557 57615690 -66460482 + Lx LINE L1 6242 6374 -280 2 1024 1565 30 25 0 chr9 57615690 57615888 -66460284 + MT2_Mm LTR ERVL 291 493 0 2 1024 5523 23 0 0 chr9 57615888 57616533 -66459639 - MERVL-int LTR ERVL -1165 4320 3676 2 1024 1723 78 4 19 chr9 57616534 57616796 -66459376 + Lx LINE L1 6396 6653 -1 2 1024 422 65 16 0 chr9 57618124 57618186 -66457986 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1024 304 245 70 60 chr9 57618368 57618468 -66457704 - L1M4b LINE L1 -5014 2320 2220 2 1024 1115 62 7 0 chr9 57618468 57618614 -66457558 - B1_Mm SINE Alu 0 147 1 2 1024 1141 61 0 0 chr9 57619036 57619183 -66456989 - B1_Mus1 SINE Alu 0 148 2 2 1024 613 104 0 0 chr9 57620358 57620452 -66455720 + ORR1C2 LTR MaLR 5 98 -286 2 1024 1161 93 0 0 chr9 57620452 57620613 -66455559 + B2_Mm2 SINE B2 1 161 -34 2 1024 333 0 0 0 chr9 57620613 57620650 -66455522 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 2 1024 650 19 65 0 chr9 57620683 57620791 -66455381 + (TC)n Simple_repeat Simple_repeat 2 116 0 2 1024 1162 163 9 19 chr9 57620799 57621012 -66455160 + ORR1C2 LTR MaLR 174 384 0 2 1024 546 239 34 0 chr9 57621267 57621384 -66454788 + ID_B1 SINE B4 98 218 -6 2 1024 1005 237 40 8 chr9 57621680 57621931 -66454241 - RMER15 LTR ERVL -21 554 296 2 1024 371 213 160 56 chr9 57621921 57622065 -66454107 - RMER15 LTR ERVL -390 185 27 2 1024 919 161 5 27 chr9 57622093 57622278 -66453894 + B2_Mm2 SINE B2 1 181 -14 2 1024 665 77 0 0 chr9 57622279 57622370 -66453802 - B1_Mus2 SINE Alu -4 143 53 2 1024 210 258 16 16 chr9 57622459 57622522 -66453650 + ID4_ SINE ID 15 77 -6 2 1024 945 88 45 1 chr9 57622470 57622626 -66453546 + B2_Mm2 SINE B2 29 188 -7 2 1024 327 307 167 0 chr9 57622849 57622999 -66453173 - MLT1B LTR MaLR -215 175 1 2 1024 1149 15 0 0 chr9 57624273 57624407 -66451765 - B1_Mus2 SINE Alu -12 135 2 2 1024 182 224 190 0 chr9 57625541 57625599 -66450573 - MIRm SINE MIR -120 156 88 2 1024 1616 154 212 25 chr9 57625733 57626087 -66450085 + MTC LTR MaLR 1 420 -1 3 1024 5144 168 80 97 chr9 57626087 57626493 -66449679 + MTC-int LTR MaLR 6 444 -814 3 1024 1106 48 0 52 chr9 57626493 57626647 -66449525 + B1_Mus2 SINE Alu 2 147 0 3 1024 5144 168 80 97 chr9 57626647 57627281 -66448891 + MTC-int LTR MaLR 445 1054 -204 3 1024 867 150 188 32 chr9 57627281 57627467 -66448705 - B3 SINE B2 0 216 2 3 1024 5144 168 80 97 chr9 57627467 57627648 -66448524 + MTC-int LTR MaLR 1055 1207 -51 3 1024 1149 35 0 20 chr9 57627648 57627786 -66448386 + B1_Mus1 SINE Alu 1 138 -10 3 1024 234 0 0 0 chr9 57627786 57627812 -66448360 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1024 5144 168 80 97 chr9 57627819 57627870 -66448302 + MTC-int LTR MaLR 1208 1258 0 3 1024 2403 129 40 2 chr9 57627870 57628265 -66447907 + MTC LTR MaLR 1 410 -11 3 1024 857 299 86 37 chr9 57628270 57628676 -66447496 - RLTR23 LTR ERV1 0 430 5 3 1024 354 342 0 16 chr9 57629220 57629342 -66446830 - PB1 SINE Alu -7 120 1 3 1024 951 116 0 39 chr9 57629453 57629606 -66446566 - B1_Mus1 SINE Alu 0 148 2 3 1024 2808 128 42 21 chr9 57629732 57630230 -66445942 - MT2B LTR ERVL 0 601 16 3 1024 601 138 83 0 chr9 57630366 57630475 -66445697 + MTB_Mm LTR MaLR 1 118 -289 3 1024 2788 134 7 0 chr9 57630480 57630921 -66445251 - RLTR19 LTR ERVK 0 499 56 3 1024 1010 101 0 63 chr9 57630969 57631127 -66445045 - B1_Mus1 SINE Alu 0 148 1 3 1024 350 176 2 0 chr9 57631129 57631198 -66444974 + MTB_Mm LTR MaLR 277 360 -61 3 1024 180 0 0 0 chr9 57631220 57631240 -66444932 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 1024 4249 57 20 5 chr9 57631240 57631801 -66444371 - L1_Mus4 LINE L1 -24 6612 6044 3 1024 4181 150 69 67 chr9 57631812 57632696 -66443476 - RMER19B LTR ERVK -15 887 2 3 1024 388 181 0 14 chr9 57632697 57632770 -66443402 + MTB_Mm LTR MaLR 348 419 0 3 1024 188 191 199 45 chr9 57633069 57633190 -66442982 + MIR SINE MIR 57 181 -81 3 1024 1579 179 65 25 chr9 57633190 57633546 -66442626 - ORR1D1 LTR MaLR -4 370 1 3 1024 183 242 122 108 chr9 57633546 57633573 -66442599 + MIR SINE MIR 182 206 -56 3 1024 387 0 0 0 chr9 57633806 57633849 -66442323 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1024 573 15 0 0 chr9 57633849 57633914 -66442258 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1024 442 257 9 0 chr9 57634053 57634162 -66442010 - ID_B1 SINE B4 -4 220 111 3 1024 332 169 28 0 chr9 57634277 57634348 -66441824 + CT-rich Low_complexity Low_complexity 1 73 0 3 1024 249 108 0 0 chr9 57634353 57634390 -66441782 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1024 495 192 184 0 chr9 57634391 57634516 -66441656 - B1_Mur1 SINE Alu -1 148 1 3 1024 917 218 43 0 chr9 57634516 57634704 -66441468 - B3 SINE B2 -1 215 20 3 1024 1143 187 73 88 chr9 57634840 57635157 -66441015 + ORR1D1 LTR MaLR 57 368 -6 3 1024 248 172 86 0 chr9 57635268 57635326 -66440846 - B1_Mur2 SINE Alu 0 149 87 3 1024 1495 147 219 20 chr9 57635329 57635674 -66440498 + MT2A LTR ERVL 1 424 -109 3 1024 848 124 167 25 chr9 57635674 57635872 -66440300 - URR1A DNA MER1_type 0 226 1 3 1024 244 132 207 86 chr9 57635872 57635942 -66440230 + MT2A LTR ERVL 425 493 -40 3 1024 873 142 18 9 chr9 57635943 57636173 -66439999 + (CATA)n Simple_repeat Simple_repeat 1 232 0 3 1024 1227 97 32 5 chr9 57636239 57636425 -66439747 - B2_Mm2 SINE B2 -2 193 3 3 1024 471 35 0 0 chr9 57636437 57636494 -66439678 + (TATG)n Simple_repeat Simple_repeat 4 60 0 3 1024 646 241 255 48 chr9 57636513 57636824 -66439348 - MT2B LTR ERVL -221 380 4 3 1024 248 218 45 86 chr9 57636835 57636946 -66439226 - PB1D9 SINE Alu 0 117 17 3 1024 689 169 28 7 chr9 57636998 57637141 -66439031 + B1_Mus1 SINE Alu 2 147 -1 3 1024 259 237 34 0 chr9 57637154 57637213 -66438959 - RSINE1 SINE B4 -21 144 84 3 1024 434 202 173 0 chr9 57637349 57637453 -66438719 - RSINE1 SINE B4 -35 130 9 3 1024 21 0 0 0 chr9 57639370 57639391 -66436781 + AT_rich Low_complexity Low_complexity 1 21 0 3 1024 213 94 0 0 chr9 57640397 57640429 -66435743 + (CTG)n Simple_repeat Simple_repeat 3 34 0 3 1024 1438 164 27 54 chr9 57641876 57642173 -66433999 + RLTR12B LTR ERVK 240 528 0 3 1024 1374 81 16 0 chr9 57642175 57642361 -66433811 + B2_Mm2 SINE B2 1 189 -6 3 1024 312 180 0 0 chr9 57642372 57642422 -66433750 + B1_Mus2 SINE Alu 87 136 -11 3 1024 300 91 0 0 chr9 57642444 57642488 -66433684 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1024 333 159 0 0 chr9 57644395 57644458 -66431714 + (CAG)n Simple_repeat Simple_repeat 1 63 0 3 1024 578 194 59 86 chr9 57645137 57645289 -66430883 - RSINE1 SINE B4 -16 149 2 3 1024 203 0 0 36 chr9 57647082 57647110 -66429062 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 3 1024 916 229 30 5 chr9 57647293 57647491 -66428681 + B3 SINE B2 1 203 -13 3 1024 644 214 0 51 chr9 57647491 57647629 -66428543 + B1_Mur1 SINE Alu 4 134 -15 3 1024 254 250 14 27 chr9 57647644 57647718 -66428454 - B4A SINE B4 -1 291 219 3 1024 280 299 74 9 chr9 57647875 57647983 -66428189 + PB1 SINE Alu 10 124 -3 3 1024 193 278 13 53 chr9 57648913 57648989 -66427183 + L2a LINE L2 3280 3352 -74 3 1024 343 158 196 21 chr9 57648998 57649095 -66427077 + ID_B1 SINE B4 93 206 -18 3 1024 924 133 7 0 chr9 57649635 57649778 -66426394 - B1_Mur4 SINE Alu -6 144 1 3 1024 264 30 0 0 chr9 57651711 57651744 -66424428 + (CAGG)n Simple_repeat Simple_repeat 1 33 0 3 1024 31 0 0 0 chr9 57651921 57651952 -66424220 + AT_rich Low_complexity Low_complexity 1 31 0 3 1024 1137 78 36 5 chr9 57652229 57652423 -66423749 + MusHAL1 LINE L1 1886 2085 -627 3 1024 222 118 0 0 chr9 57652490 57652524 -66423648 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 3 1024 247 347 34 77 chr9 57655906 57656140 -66420032 + YREP_Mm Unknown Unknown 73 296 -1516 3 1024 644 243 15 0 chr9 57656024 57656160 -66420012 - ID_B1 SINE B4 -6 218 81 3 1024 485 285 56 12 chr9 57656159 57656319 -66419853 + MER20 DNA MER1_type 53 219 0 3 1024 235 294 11 32 chr9 57657078 57657173 -66418999 + GA-rich Low_complexity Low_complexity 4 96 0 3 1024 731 184 0 0 chr9 57660884 57661009 -66415163 - B1_Mus1 SINE Alu -9 139 15 3 1024 180 0 0 0 chr9 57661120 57661140 -66415032 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1024 192 250 27 40 chr9 57662140 57662215 -66413957 - MIRb SINE MIR -131 137 64 3 1024 255 31 0 0 chr9 57662972 57663004 -66413168 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1024 494 47 47 0 chr9 57663031 57663117 -66413055 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 1024 315 0 0 0 chr9 57663199 57663234 -66412938 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1024 229 305 109 44 chr9 57663859 57663996 -66412176 - L2a LINE L2 -1 3425 3280 3 1024 889 197 93 5 chr9 57664125 57664319 -66411853 - B3 SINE B2 -3 213 3 3 1024 699 196 34 40 chr9 57664370 57664519 -66411653 - B1_Mur1 SINE Alu 0 149 2 3 1024 522 193 240 0 chr9 57664551 57664722 -66411450 - B3 SINE B2 -4 212 1 3 1024 180 234 0 0 chr9 57665671 57665718 -66410454 + GA-rich Low_complexity Low_complexity 2 48 0 3 1024 283 262 73 18 chr9 57666884 57666993 -66409179 - PB1D10 SINE Alu -2 115 1 3 1024 524 239 32 64 chr9 57667022 57667210 -66408962 - B3A SINE B2 -16 182 1 3 1024 260 273 13 13 chr9 57667266 57667344 -66408828 + ID2 SINE ID 3 80 -3 3 1024 402 252 48 0 chr9 57667585 57667688 -66408484 + PB1D7 SINE Alu 4 111 -9 3 1024 741 223 7 0 chr9 57667703 57667842 -66408330 - B1_Mur1 SINE Alu 0 149 10 3 1024 316 263 175 18 chr9 57667902 57668119 -66408053 + L1ME4a LINE L1 5873 6123 -1 3 1024 348 250 159 6 chr9 57668149 57668306 -66407866 - ID_B1 SINE B4 -11 213 33 3 1024 24 67 0 0 chr9 57669057 57669102 -66407070 + AT_rich Low_complexity Low_complexity 1 45 0 3 1024 736 219 0 52 chr9 57669222 57669376 -66406796 - B1_Mur1 SINE Alu -1 148 3 3 1024 663 226 92 16 chr9 57669950 57670134 -66406038 - B3A SINE B2 0 198 1 3 1024 1122 81 0 33 chr9 57670184 57670337 -66405835 - B1_Mus1 SINE Alu 0 148 1 3 1024 27 29 0 0 chr9 57670373 57670407 -66405765 + AT_rich Low_complexity Low_complexity 1 34 0 3 1024 582 280 0 14 chr9 57670931 57671076 -66405096 + RSINE1 SINE B4 16 158 -7 3 1024 339 290 0 9 chr9 57671099 57671207 -66404965 + PB1 SINE Alu 19 125 -2 3 1024 221 315 0 0 chr9 57671207 57671299 -66404873 + GA-rich Low_complexity Low_complexity 4 95 0 3 1024 229 108 0 0 chr9 57671364 57671401 -66404771 + tRNA-Ala-GCA tRNA tRNA 6 42 -33 3 1024 220 260 0 64 chr9 57671401 57671441 -66404731 + ID4_ SINE ID 12 83 0 3 15 309 322 93 83 chr9 57671528 57671681 -66404491 + L1M5 LINE L1 2625 2781 -3365 3 1025 514 286 170 0 chr9 57671681 57671863 -66404309 + ID_B1 SINE B4 2 214 -10 3 1025 309 322 93 83 chr9 57671863 57672010 -66404162 + L1M5 LINE L1 2782 2928 -3218 3 1025 207 0 0 0 chr9 57672075 57672098 -66404074 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 1025 367 167 222 0 chr9 57672337 57672427 -66403745 + L1MC1 LINE L1 6021 6130 -203 3 1025 373 297 100 14 chr9 57672428 57672568 -66403604 + RSINE1 SINE B4 4 155 -10 3 1025 387 218 48 29 chr9 57672636 57672740 -66403432 + L1MC1 LINE L1 6124 6229 -104 3 1025 1447 118 22 22 chr9 57673155 57673381 -66402791 + URR1A DNA MER1_type 1 226 0 3 1025 374 280 0 0 chr9 57673979 57674072 -66402100 + ID_B1 SINE B4 112 204 -20 3 1025 584 91 11 0 chr9 57674141 57674229 -66401943 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 3 1025 898 144 0 0 chr9 57674229 57674368 -66401804 - B1_Mus1 SINE Alu -3 145 7 3 1025 356 152 37 37 chr9 57674618 57674700 -66401472 + B2_Mm2 SINE B2 114 195 0 3 1025 577 170 0 169 chr9 57675733 57675910 -66400262 + B1_Mus2 SINE Alu 1 147 0 3 1025 256 315 89 65 chr9 57676109 57676323 -66399849 - MER20 DNA MER1_type 0 219 1 3 1025 413 351 78 5 chr9 57676654 57676860 -66399312 - ID_B1 SINE B4 -2 222 2 3 1025 331 295 92 8 chr9 57678409 57678539 -66397633 + RSINE1 SINE B4 25 165 0 4 1025 402 283 45 65 chr9 57678616 57678771 -66397401 + RSINE1 SINE B4 12 163 -2 4 1025 241 373 9 35 chr9 57679772 57679886 -66396286 - B1F SINE Alu -26 123 13 4 1025 182 244 0 0 chr9 57679895 57679936 -66396236 - MIRc SINE MIR -112 156 116 4 1025 751 230 0 0 chr9 57680766 57680905 -66395267 - B1_Mur1 SINE Alu -6 143 5 4 1025 24 0 0 0 chr9 57680910 57680934 -66395238 + AT_rich Low_complexity Low_complexity 1 24 0 4 1025 255 284 157 11 chr9 57680963 57681052 -66395120 - PB1D10 SINE Alu -7 110 9 4 1025 309 68 0 0 chr9 57681913 57681957 -66394215 + (CTG)n Simple_repeat Simple_repeat 3 46 0 4 1025 180 111 0 0 chr9 57682288 57682315 -66393857 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1025 200 158 0 50 chr9 57685351 57685391 -66390781 + CT-rich Low_complexity Low_complexity 3 40 0 4 1025 643 293 35 0 chr9 57685407 57685581 -66390591 - B4A SINE B4 -103 189 10 4 1025 243 0 0 0 chr9 57686194 57686221 -66389951 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1025 1199 48 0 7 chr9 57686221 57686367 -66389805 - B1_Mm SINE Alu -2 145 1 4 1025 546 327 104 62 chr9 57686973 57687611 -66388561 - L2a LINE L2 -154 3272 2607 4 1025 288 0 0 0 chr9 57687770 57687802 -66388370 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1025 231 132 0 0 chr9 57687832 57687870 -66388302 + L1M5 LINE L1 5860 5897 -267 4 1025 487 258 88 25 chr9 57687977 57688136 -66388036 - B4A SINE B4 -12 280 112 4 1025 210 71 0 0 chr9 57688209 57688237 -66387935 + (TTCTCC)n Simple_repeat Simple_repeat 3 30 0 4 1025 337 261 0 0 chr9 57688396 57688465 -66387707 - ID4_ SINE ID -14 69 1 4 1025 780 147 37 0 chr9 57688543 57688679 -66387493 + B1_Mur4 SINE Alu 10 150 0 4 1025 713 281 28 56 chr9 57688721 57688904 -66387268 + B4 SINE B4 1 181 -111 4 1025 2552 13 90 3 chr9 57688904 57689205 -66386967 - IAPLTR2b LTR ERVK 0 327 1 4 1025 713 281 28 56 chr9 57689205 57689307 -66386865 + B4 SINE B4 182 278 -14 4 1025 1368 289 46 60 chr9 57690115 57690194 -66385978 + RMER1B Other Other 17 88 -978 4 1025 705 0 0 0 chr9 57690194 57690279 -66385893 + L1Md_A LINE L1 6498 6582 0 4 1025 4442 206 68 100 chr9 57690279 57691434 -66384738 + RMER1A Other Other 22 603 -427 4 1025 3169 112 57 4 chr9 57691434 57691908 -66384264 + RLTR19 LTR ERVK 1 499 0 4 1025 4442 161 38 146 chr9 57691908 57692188 -66383984 + RMER1A Other Other 604 876 -154 4 1025 1211 54 0 0 chr9 57692188 57692335 -66383837 - B1_Mus1 SINE Alu -1 147 1 4 1025 4442 161 38 146 chr9 57692335 57692504 -66383668 + RMER1A Other Other 877 1030 0 4 1025 5056 32 2 2 chr9 57692549 57693136 -66383036 + LTRIS_Mus LTR ERV1 1 587 0 4 1025 2300 145 169 110 chr9 57693305 57693605 -66382567 - RMER6C LTR ERVK 0 690 412 4 1025 182 91 30 0 chr9 57693605 57693638 -66382534 + (CACTG)n Simple_repeat Simple_repeat 2 35 0 4 1025 2300 145 169 110 chr9 57693638 57693750 -66382422 - RMER6C LTR ERVK -279 411 335 4 1025 852 6 84 6 chr9 57693750 57693916 -66382256 + (TC)n Simple_repeat Simple_repeat 1 179 0 4 1025 2300 145 169 110 chr9 57693916 57694154 -66382018 - RMER6C LTR ERVK -356 334 2 4 1025 1322 101 16 0 chr9 57695110 57695298 -66380874 + B2_Mm2 SINE B2 4 194 -1 4 1025 1389 95 11 0 chr9 57695403 57695593 -66380579 + B2_Mm1t SINE B2 2 193 0 4 1025 219 69 0 0 chr9 57695600 57695629 -66380543 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 1025 30 27 0 0 chr9 57695639 57695676 -66380496 + AT_rich Low_complexity Low_complexity 1 37 0 4 1025 243 0 0 0 chr9 57695688 57695715 -66380457 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1025 1120 60 7 0 chr9 57695727 57695878 -66380294 + B2_Mm1t SINE B2 2 153 -40 4 1025 231 22 20 80 chr9 57695878 57695928 -66380244 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 4 1025 316 314 0 76 chr9 57696480 57696652 -66379520 - RMER4A LTR ERVK -282 184 26 4 1025 1192 48 0 7 chr9 57696933 57697080 -66379092 - B1_Mm SINE Alu 0 147 2 4 1025 1007 95 47 111 chr9 57697082 57697272 -66378900 - B2_Mm2 SINE B2 -16 179 2 4 1025 917 314 77 9 chr9 57697275 57697625 -66378547 + Tigger7 DNA MER2_type 38 411 -2080 4 1025 435 269 0 37 chr9 57698295 57698403 -66377769 + B1F SINE Alu 38 141 -8 4 1025 697 87 9 9 chr9 57698414 57698530 -66377642 + (TG)n Simple_repeat Simple_repeat 1 116 0 4 1025 621 244 0 0 chr9 57698731 57698858 -66377314 + RSINE1 SINE B4 1 127 -38 4 1025 1094 83 14 0 chr9 57698903 57699048 -66377124 - B1_Mus1 SINE Alu 0 148 2 4 1025 713 198 77 53 chr9 57699469 57699677 -66376495 + B3 SINE B2 3 215 -1 4 1025 389 259 0 6 chr9 57699743 57699918 -66376254 + (TG)n Simple_repeat Simple_repeat 2 175 0 4 1025 465 239 0 16 chr9 57699957 57700140 -66376032 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1025 234 178 0 118 chr9 57700142 57700193 -66375979 - ID SINE ID -177 47 3 4 1025 338 260 143 9 chr9 57700324 57700429 -66375743 - B3 SINE B2 -90 126 8 4 1025 251 288 0 0 chr9 57700444 57700503 -66375669 - PB1D10 SINE Alu -7 110 52 4 1025 34 0 0 0 chr9 57700784 57700818 -66375354 + AT_rich Low_complexity Low_complexity 1 34 0 4 1025 1628 26 0 30 chr9 57700824 57701022 -66375150 + B2_Mm1a SINE B2 2 193 0 4 1025 2197 255 25 41 chr9 57701033 57701590 -66374582 - Lx5 LINE L1 -17 7033 6486 4 1025 230 114 0 43 chr9 57701596 57701642 -66374530 - Lx6 LINE L1 -1587 5873 5830 4 1025 1172 161 6 8 chr9 57701627 57701832 -66374340 - Lx6 LINE L1 -268 5609 5380 4 1025 296 220 33 11 chr9 57702542 57702634 -66373538 + ID_B1 SINE B4 115 208 -16 4 1025 414 0 0 0 chr9 57702634 57702680 -66373492 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1025 405 239 121 26 chr9 57702702 57702818 -66373354 + RSINE1 SINE B4 8 134 -31 4 1025 180 0 0 0 chr9 57702830 57702850 -66373322 + (CG)n Simple_repeat Simple_repeat 2 21 0 4 1025 450 0 0 0 chr9 57702850 57702899 -66373273 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1025 273 238 34 151 chr9 57702913 57703032 -66373140 + B3A SINE B2 1 105 -93 4 1025 456 244 84 0 chr9 57703097 57703216 -66372956 + RSINE1 SINE B4 31 159 -6 4 1025 1362 71 33 0 chr9 57703233 57703417 -66372755 - B2_Mm1t SINE B2 -2 191 2 4 1025 339 169 24 72 chr9 57704092 57704175 -66371997 + L1MC LINE L1 5716 5794 -395 4 1025 316 250 13 40 chr9 57704288 57704363 -66371809 + ID SINE ID 11 83 -141 4 1025 402 217 11 25 chr9 57704408 57704523 -66371649 + B1_Mur4 SINE Alu 14 119 -1 4 1025 249 242 145 32 chr9 57704529 57704653 -66371519 + ID_B1 SINE B4 87 224 0 4 1025 29 0 0 0 chr9 57704772 57704801 -66371371 + AT_rich Low_complexity Low_complexity 1 29 0 4 1025 745 113 17 162 chr9 57704801 57704845 -66371327 - B2_Mm2 SINE B2 -8 187 149 4 1025 1230 48 0 0 chr9 57704845 57704991 -66371181 + B1_Mm SINE Alu 2 147 0 4 1025 255 31 0 0 chr9 57705000 57705032 -66371140 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1025 745 113 17 162 chr9 57705032 57705156 -66371016 - B2_Mm2 SINE B2 -47 148 35 4 1025 206 191 57 29 chr9 57705156 57705188 -66370984 + A-rich Low_complexity Low_complexity 4 39 0 4 1025 609 152 455 0 chr9 57705188 57705333 -66370839 + B3 SINE B2 1 211 -5 4 1025 206 191 57 29 chr9 57705333 57705370 -66370802 + A-rich Low_complexity Low_complexity 40 75 0 4 1025 3182 63 5 0 chr9 57705399 57705797 -66370375 + MTB LTR MaLR 1 400 0 4 1025 406 304 97 62 chr9 57706066 57706325 -66369847 - MLT1J-int LTR MaLR -221 1166 899 4 1025 279 79 0 0 chr9 57706535 57706573 -66369599 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1025 1429 73 15 25 chr9 57706639 57706836 -66369336 - B2_Mm2 SINE B2 0 195 1 4 1025 3781 164 87 47 chr9 57706956 57707817 -66368355 - RMER19B LTR ERVK -6 896 1 4 1025 266 87 22 0 chr9 57708088 57708134 -66368038 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1025 427 347 14 14 chr9 57708161 57708307 -66367865 - RSINE1 SINE B4 -8 157 12 4 1025 762 134 21 7 chr9 57708876 57709019 -66367153 - URR1B DNA MER1_type -2 223 79 4 1025 1455 83 0 0 chr9 57709094 57709286 -66366886 - B2_Mm1a SINE B2 0 193 2 4 1025 507 191 25 25 chr9 57709308 57709426 -66366746 - URR1B DNA MER1_type -93 132 15 4 1025 7671 97 15 3 chr9 57710619 57712170 -66364002 + L1_Mus4 LINE L1 5099 6636 0 4 1025 196 77 51 0 chr9 57712182 57712221 -66363951 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1025 468 171 0 22 chr9 57712285 57712375 -66363797 + MT2A LTR ERVL 1 88 -445 4 1025 646 212 1 23 chr9 57712354 57712513 -66363659 + MT2A LTR ERVL 345 529 -55 4 1025 335 192 13 0 chr9 57712513 57712591 -66363581 + CT-rich Low_complexity Low_complexity 4 82 0 4 1025 390 21 0 0 chr9 57712591 57712638 -66363534 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1025 812 188 0 59 chr9 57712938 57713091 -66363081 + B1_Mur4 SINE Alu 2 145 -5 4 1025 631 238 13 13 chr9 57713217 57713228 -66362944 + MTD LTR MaLR 5 15 -404 4 1025 180 0 0 0 chr9 57713228 57713248 -66362924 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 4 1025 631 216 481 10 chr9 57713248 57713520 -66362652 + MTD LTR MaLR 16 415 -4 4 1025 1028 194 39 15 chr9 57713718 57713922 -66362250 + B3 SINE B2 1 209 -7 4 1025 568 219 35 5 chr9 57713939 57714095 -66362077 - B3 SINE B2 -1 197 31 4 1025 419 281 21 0 chr9 57714087 57714183 -66361989 - ID_B1 SINE B4 -121 103 6 4 1025 255 293 108 68 chr9 57715047 57715223 -66360949 - MLT1J2 LTR MaLR 0 448 266 4 1025 387 351 104 0 chr9 57716121 57716255 -66359917 + RSINE1 SINE B4 5 152 -13 4 1025 395 52 0 17 chr9 57716258 57716317 -66359855 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1025 513 266 46 29 chr9 57716468 57716687 -66359485 + L1M5 LINE L1 5303 5527 -646 4 1025 951 196 19 29 chr9 57717020 57717225 -66358947 - B3 SINE B2 0 216 14 4 1025 474 132 13 0 chr9 57717228 57717304 -66358868 + ORR1D1 LTR MaLR 6 82 -292 4 1025 1899 173 50 55 chr9 57717304 57717720 -66358452 - MTC LTR MaLR 0 421 8 4 1025 1134 207 79 7 chr9 57717721 57717998 -66358174 + ORR1D1 LTR MaLR 78 374 0 4 1025 329 95 16 0 chr9 57718086 57718149 -66358023 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1025 391 317 54 18 chr9 57718668 57718835 -66357337 + MTEa LTR MaLR 1 173 -206 5 1025 593 299 121 20 chr9 57718862 57719111 -66357061 + B4 SINE B4 1 274 -18 5 1025 405 0 0 0 chr9 57719135 57719180 -66356992 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1025 239 378 139 5 chr9 57719282 57719476 -66356696 + MT2A LTR ERVL 305 524 -9 5 1025 307 336 103 18 chr9 57719485 57719758 -66356414 + MERVL-int LTR ERVL 4141 4436 -1049 5 1025 561 292 77 20 chr9 57719816 57720012 -66356160 - RMER15 LTR ERVL -10 565 359 5 1025 710 189 79 7 chr9 57720060 57720199 -66355973 - B1F1 SINE Alu 0 149 1 5 1025 453 66 0 0 chr9 57720367 57720428 -66355744 + (TATG)n Simple_repeat Simple_repeat 2 62 0 5 1025 631 192 8 0 chr9 57720430 57720550 -66355622 - B1_Mur1 SINE Alu -20 129 9 5 1025 242 353 9 38 chr9 57720455 57720561 -66355611 - B4A SINE B4 -107 185 83 5 1025 224 30 30 0 chr9 57721471 57721504 -66354668 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1025 312 218 50 25 chr9 57722178 57722258 -66353914 - ID2 SINE ID -1 82 1 5 1025 936 102 66 0 chr9 57722444 57722581 -66353591 - B1_Mus1 SINE Alu 0 148 3 5 1025 207 0 0 0 chr9 57722679 57722702 -66353470 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1025 231 114 0 0 chr9 57723510 57723545 -66352627 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1025 1022 263 99 6 chr9 57723569 57723932 -66352240 - L1MC4 LINE L1 -143 7899 7503 5 1025 348 244 126 33 chr9 57724162 57724190 -66351982 - L1MC4 LINE L1 -1228 6654 6616 5 1025 1673 164 146 29 chr9 57724190 57724419 -66351753 - MTC LTR MaLR 0 421 146 5 1025 854 144 20 27 chr9 57724419 57724569 -66351603 + B1_Mur4 SINE Alu 1 149 -1 5 1025 1673 164 146 29 chr9 57724569 57724716 -66351456 - MTC LTR MaLR -276 145 2 5 1025 358 244 126 33 chr9 57724716 57724869 -66351303 - L1MC4 LINE L1 -1267 6615 6456 5 1025 325 197 40 40 chr9 57725357 57725431 -66350741 - B1F SINE Alu 0 149 76 5 1025 1510 28 55 0 chr9 57725589 57725771 -66350401 - B2_Mm1a SINE B2 0 193 2 5 1025 668 219 0 30 chr9 57725891 57726017 -66350155 + B1F SINE Alu 12 133 -16 5 1025 402 21 0 0 chr9 57726017 57726064 -66350108 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1025 320 229 71 0 chr9 57726069 57726134 -66350038 + ID_B1 SINE B4 148 222 -2 5 1025 250 336 35 17 chr9 57726249 57726364 -66349808 - L2a LINE L2 -27 3399 3283 5 1025 448 253 55 85 chr9 57726375 57726539 -66349633 + RSINE1 SINE B4 2 160 -5 5 1025 270 81 0 0 chr9 57726553 57726590 -66349582 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1025 476 93 13 0 chr9 57726682 57726757 -66349415 + (CATA)n Simple_repeat Simple_repeat 3 78 0 5 1025 343 226 199 6 chr9 57726757 57726910 -66349262 + MER2 DNA MER2_type 23 207 -138 5 1025 23 33 0 0 chr9 57726915 57726945 -66349227 + AT_rich Low_complexity Low_complexity 1 30 0 5 1025 629 200 97 86 chr9 57727287 57727462 -66348710 + B4 SINE B4 2 178 -114 5 1025 485 305 78 78 chr9 57727509 57727740 -66348432 + B4A SINE B4 2 232 -60 5 1025 570 100 30 0 chr9 57728058 57728158 -66348014 + (TCC)n Simple_repeat Simple_repeat 3 105 0 5 1025 655 163 0 17 chr9 57728702 57728822 -66347350 + B1_Mur1 SINE Alu 7 114 -6 5 1025 445 154 0 21 chr9 57729205 57729298 -66346874 + CT-rich Low_complexity Low_complexity 2 92 0 5 1025 344 237 0 186 chr9 57729300 57729440 -66346732 - ID_B1 SINE B4 -2 222 109 5 1025 423 0 0 0 chr9 57729457 57729504 -66346668 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 1025 607 214 16 16 chr9 57729506 57729634 -66346538 - B1_Mur4 SINE Alu -14 136 9 5 1025 1449 189 196 151 chr9 57729694 57729844 -66346328 + MT2A LTR ERVL 1 114 -419 5 1025 1127 82 7 0 chr9 57729844 57729990 -66346182 - B1_Mus1 SINE Alu -1 147 1 5 1025 1449 189 196 151 chr9 57729990 57730349 -66345823 + MT2A LTR ERVL 115 533 0 5 1025 726 196 14 7 chr9 57730598 57730742 -66345430 + B1_Mur1 SINE Alu 5 149 0 5 1025 368 153 13 40 chr9 57730745 57730820 -66345352 + ORR1E LTR MaLR 287 359 0 5 1025 209 108 27 0 chr9 57731209 57731246 -66344926 + (GAAAA)n Simple_repeat Simple_repeat 5 42 0 5 1025 1005 148 55 0 chr9 57731925 57732107 -66344065 + B2_Mm2 SINE B2 1 192 -3 5 1025 1196 237 27 57 chr9 57732446 57733158 -66343014 + Lx7 LINE L1 828 1529 -4351 5 1025 35 41 0 0 chr9 57733182 57733231 -66342941 + AT_rich Low_complexity Low_complexity 1 49 0 5 1025 1152 50 0 0 chr9 57733382 57733523 -66342649 + B1_Mus1 SINE Alu 2 142 -6 5 1025 564 106 0 0 chr9 57733528 57733613 -66342559 + (GA)n Simple_repeat Simple_repeat 2 86 0 5 1025 537 44 0 0 chr9 57733707 57733775 -66342397 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1025 183 42 0 0 chr9 57733885 57733909 -66342263 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1025 713 203 70 0 chr9 57733909 57734037 -66342135 - B1_Mus1 SINE Alu -9 139 3 5 1025 1848 190 21 21 chr9 57734048 57734430 -66341742 + Lx7 LINE L1 1549 1930 -3950 5 1025 1896 165 149 7 chr9 57734406 57734821 -66341351 + Lx7 LINE L1 2258 2731 -3149 5 1025 356 292 30 122 chr9 57734821 57734843 -66341329 + B4 SINE B4 77 184 -108 5 1025 867 134 0 15 chr9 57734843 57734979 -66341193 + B1_Mur3 SINE Alu 9 142 -7 5 1025 419 157 0 0 chr9 57734991 57735061 -66341111 + Lx7 LINE L1 2727 2796 -3084 5 1025 6221 43 20 0 chr9 57735085 57735839 -66340333 + L1_Mus1 LINE L1 5812 6567 0 5 1025 1246 41 0 0 chr9 57735839 57735985 -66340187 + B1_Mus2 SINE Alu 2 147 0 5 1025 221 130 0 18 chr9 57735985 57736026 -66340146 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 5 1025 1387 220 138 9 chr9 57736117 57736191 -66339981 - RLTR16 LTR ERVK -14 491 415 5 1025 324 0 0 0 chr9 57736191 57736227 -66339945 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1025 1387 220 138 9 chr9 57736227 57736587 -66339585 - RLTR16 LTR ERVK -91 414 3 5 1025 538 175 0 32 chr9 57736589 57736713 -66339459 + Lx7 LINE L1 2789 2908 -2972 5 1025 303 225 32 43 chr9 57736780 57736873 -66339299 + RMER1B Other Other 60 151 -915 5 1025 201 147 0 0 chr9 57736971 57737005 -66339167 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1025 4132 164 55 155 chr9 57737389 57738410 -66337762 + RMER1B Other Other 44 940 -126 5 1025 192 40 0 0 chr9 57738410 57738435 -66337737 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 5 1025 4132 164 55 155 chr9 57738435 57738548 -66337624 + RMER1B Other Other 941 1065 -1 5 1025 935 137 0 20 chr9 57738562 57738711 -66337461 + B1_Mur4 SINE Alu 5 150 0 5 1025 299 25 0 24 chr9 57738716 57738757 -66337415 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 1025 13927 184 40 24 chr9 57738757 57740232 -66335940 + Lx7 LINE L1 2897 4429 -1451 5 1025 1096 79 0 0 chr9 57740232 57740372 -66335800 + B1_Mus1 SINE Alu 1 140 -8 5 1025 486 46 0 0 chr9 57740372 57740437 -66335735 + (CCAA)n Simple_repeat Simple_repeat 2 66 0 5 1025 13927 192 48 30 chr9 57740437 57742040 -66334132 + Lx7 LINE L1 4430 6137 -1557 5 1025 518 149 252 0 chr9 57742040 57742147 -66334025 + B1_Mur3 SINE Alu 9 142 -7 5 1025 717 12 0 0 chr9 57742149 57742231 -66333941 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 1025 5645 236 91 63 chr9 57742231 57743466 -66332706 + Lx7 LINE L1 6140 7416 -280 5 1025 986 67 0 0 chr9 57743724 57743858 -66332314 + B2_Mm2 SINE B2 2 135 -60 5 1025 4952 41 2 2 chr9 57743864 57744452 -66331720 + L1Md_F2 LINE L1 5994 6581 -1 5 1025 586 279 0 95 chr9 57745030 57745240 -66330932 + B3 SINE B2 27 216 0 5 1025 1239 47 0 0 chr9 57745257 57745405 -66330767 + B1_Mus1 SINE Alu 1 148 0 5 1025 29 47 0 0 chr9 57745405 57745448 -66330724 + AT_rich Low_complexity Low_complexity 1 43 0 5 1025 341 271 76 8 chr9 57745492 57745611 -66330561 + B1F SINE Alu 18 144 -5 5 1025 462 18 0 0 chr9 57745640 57745695 -66330477 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1025 1243 25 0 42 chr9 57746075 57746243 -66329929 + B2_Mm2 SINE B2 1 161 -34 5 1025 189 0 0 0 chr9 57746244 57746265 -66329907 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1025 33 56 0 0 chr9 57746483 57746537 -66329635 + AT_rich Low_complexity Low_complexity 1 54 0 5 1025 233 267 209 0 chr9 57746935 57747021 -66329151 + B4A SINE B4 134 237 -55 5 1025 216 224 41 0 chr9 57747136 57747185 -66328987 + GA-rich Low_complexity Low_complexity 2 52 0 5 1025 629 174 32 89 chr9 57747226 57747384 -66328788 + B1_Mur3 SINE Alu 1 149 0 5 1025 465 19 0 0 chr9 57747494 57747548 -66328624 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 5 1025 964 67 0 69 chr9 57747616 57747761 -66328411 + B1_Mus2 SINE Alu 1 135 -12 5 1025 605 69 0 11 chr9 57747761 57747849 -66328323 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 5 1025 628 306 136 4 chr9 57748526 57748798 -66327374 + Tigger7 DNA MER2_type 1 308 -2183 5 1025 451 252 41 41 chr9 57749900 57749988 -66326184 + B1F SINE Alu 5 93 -56 5 1025 1902 166 124 3 chr9 57749988 57750351 -66325821 - MTB_Mm LTR MaLR 0 407 1 5 1025 451 252 41 41 chr9 57750351 57750407 -66325765 + B1F SINE Alu 94 149 0 5 1025 350 283 69 44 chr9 57750431 57750590 -66325582 + L1ME3 LINE L1 5486 5648 -525 5 1025 478 292 187 70 chr9 57750595 57750699 -66325473 - MTD LTR MaLR -13 383 255 5 1025 1141 62 7 0 chr9 57750699 57750844 -66325328 + B1_Mm SINE Alu 1 146 -1 5 1025 1121 196 32 14 chr9 57750844 57751081 -66325091 - MTD LTR MaLR -142 254 2 5 1025 382 270 76 62 chr9 57751098 57751323 -66324849 + L1ME3 LINE L1 5651 5878 -284 5 1025 279 288 17 0 chr9 57751332 57751391 -66324781 + ID4_ SINE ID 19 78 -5 5 1025 672 167 68 42 chr9 57751391 57751518 -66324654 + B2_Mm2 SINE B2 19 194 -1 5 1025 4155 156 52 1 chr9 57751557 57752256 -66323916 + RMER1B Other Other 1 1052 -14 5 1025 325 261 72 67 chr9 57752238 57752431 -66323741 + L1ME3 LINE L1 5942 6135 -38 5 1025 377 258 53 28 chr9 57752565 57752780 -66323392 - MLT1H LTR MaLR -303 186 1 5 1025 1268 132 11 0 chr9 57753022 57753212 -66322960 - B2_Mm1t SINE B2 0 193 2 5 1025 304 229 36 27 chr9 57753514 57753626 -66322546 - L1MB4 LINE L1 -10 6170 6058 5 1025 289 274 45 54 chr9 57753633 57753745 -66322427 + L1MC4 LINE L1 7775 7885 -157 5 1025 220 314 0 0 chr9 57753781 57753832 -66322340 + ID4 SINE ID 1 51 -32 5 1025 990 104 176 6 chr9 57753841 57754006 -66322166 + B2_Mm2 SINE B2 2 194 -1 5 1025 680 247 60 6 chr9 57754091 57754274 -66321898 - B3A SINE B2 -5 193 1 5 1025 244 282 35 23 chr9 57754543 57754630 -66321542 + L1M5 LINE L1 4674 4761 -1385 5 1025 989 205 61 5 chr9 57754631 57754827 -66321345 + B3 SINE B2 1 207 -9 6 1025 1090 196 14 0 chr9 57754863 57755072 -66321100 + B3 SINE B2 2 213 -3 6 1025 250 81 0 0 chr9 57755106 57755143 -66321029 + B2_Mm2 SINE B2 128 164 -31 6 1025 1213 88 3 7 chr9 57755701 57755891 -66320281 + B2_Mm2 SINE B2 1 193 0 6 1025 275 209 56 103 chr9 57756077 57756177 -66319995 + RSINE1 SINE B4 23 122 -170 6 1025 1275 102 27 5 chr9 57756818 57757006 -66319166 - B2_Mm1a SINE B2 -1 192 1 6 1025 1187 41 7 0 chr9 57757505 57757650 -66318522 - B1_Mus2 SINE Alu 0 147 2 6 1025 1255 104 22 0 chr9 57757695 57757877 -66318295 - B2_Mm2 SINE B2 -7 188 3 6 1025 400 198 145 8 chr9 57757912 57758029 -66318143 - RSINE1 SINE B4 -31 134 2 6 1025 370 239 35 17 chr9 57758960 57759085 -66317087 + MIRb SINE MIR 59 192 -76 6 1025 1244 47 0 0 chr9 57760064 57760212 -66315960 - B1_Mus1 SINE Alu 0 148 1 6 1025 857 48 176 0 chr9 57761144 57761269 -66314903 - B1_Mus1 SINE Alu 0 148 2 6 1025 541 191 72 9 chr9 57761409 57761520 -66314652 - PB1D9 SINE Alu 0 120 3 6 1025 353 22 0 21 chr9 57761531 57761578 -66314594 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6 1025 1215 43 0 0 chr9 57761580 57761721 -66314451 - B1_Mm SINE Alu -5 142 2 6 1025 259 310 0 0 chr9 57761754 57761825 -66314347 - ID4_ SINE ID -10 73 3 6 1025 643 277 94 23 chr9 57761984 57762250 -66313922 - B4A SINE B4 -7 285 1 6 1025 26 50 0 0 chr9 57762665 57762705 -66313467 + AT_rich Low_complexity Low_complexity 1 40 0 6 1025 1184 48 14 0 chr9 57763201 57763346 -66312826 - B1_Mm SINE Alu 0 147 1 6 1025 910 290 158 4 chr9 57763421 57763916 -66312256 + MER90 LTR ERV1 4 574 -1 6 1025 194 375 154 15 chr9 57764019 57764149 -66312023 - MIRm SINE MIR -127 149 2 6 1025 243 370 28 0 chr9 57764358 57764466 -66311706 + PB1D10 SINE Alu 1 111 -6 6 1025 777 213 0 0 chr9 57764600 57764774 -66311398 + (TA)n Simple_repeat Simple_repeat 2 175 0 6 1025 1082 86 115 44 chr9 57765306 57765488 -66310684 - B2_Mm2 SINE B2 0 195 1 6 1025 321 26 0 0 chr9 57765673 57765711 -66310461 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1025 617 243 124 26 chr9 57766282 57766476 -66309696 + B3 SINE B2 1 213 -3 6 1025 607 163 6 6 chr9 57768583 57768750 -66307422 + GA-rich Low_complexity Low_complexity 1 167 0 6 1025 461 237 33 80 chr9 57769144 57769295 -66306877 + B1F2 SINE Alu 2 145 -4 6 1025 1403 93 0 15 chr9 57769971 57770168 -66306004 + B2_Mm2 SINE B2 1 194 -1 6 1025 186 43 0 0 chr9 57771305 57771328 -66304844 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 6 1025 259 150 0 0 chr9 57772662 57772702 -66303470 + L1MC LINE L1 5697 5736 -2146 6 1025 1460 202 27 24 chr9 57772729 57772756 -66303416 + MTC LTR MaLR 1 21 -400 6 1025 275 326 33 0 chr9 57772756 57772848 -66303324 + PB1D10 SINE Alu 5 99 -18 6 1025 1460 202 27 24 chr9 57772848 57773149 -66303023 + MTC LTR MaLR 22 330 -91 6 1025 312 257 0 73 chr9 57773223 57773332 -66302840 - RLTR21 LTR ERVK -34 1538 1438 6 1025 456 19 0 0 chr9 57773350 57773403 -66302769 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1025 360 0 0 0 chr9 57773403 57773443 -66302729 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1025 5375 160 74 16 chr9 57773454 57773678 -66302494 - RMER12B LTR ERVK -231 1173 943 6 1025 1324 101 21 21 chr9 57773678 57773871 -66302301 - B2_Mm2 SINE B2 -2 193 1 6 1025 5375 160 74 16 chr9 57773871 57774755 -66301417 - RMER12B LTR ERVK -462 942 1 6 1025 458 207 0 11 chr9 57774757 57774845 -66301327 + MTC LTR MaLR 327 413 -6 6 1025 528 286 70 23 chr9 57774906 57775035 -66301137 + ID_B1 SINE B4 81 215 -9 6 1025 270 181 41 14 chr9 57775039 57775112 -66301060 + A-rich Low_complexity Low_complexity 1 75 0 6 1025 371 312 88 82 chr9 57775132 57775460 -66300712 - Lx8 LINE L1 -1 7472 7143 6 1025 272 203 107 13 chr9 57775542 57775617 -66300555 - B4 SINE B4 -210 82 1 6 1025 2355 254 123 19 chr9 57775645 57776458 -66299714 - Lx8 LINE L1 -364 7109 6212 6 1025 357 24 0 0 chr9 57776802 57776844 -66299328 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1025 270 0 0 0 chr9 57776892 57776922 -66299250 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1025 1195 61 0 7 chr9 57776984 57777132 -66299040 + B1_Mus1 SINE Alu 2 148 0 6 1025 1065 82 51 0 chr9 57777160 57777318 -66298854 + B2_Mm2 SINE B2 3 168 -27 6 1025 191 384 30 0 chr9 57779769 57779868 -66296304 - MIR SINE MIR -91 171 70 6 1025 210 308 104 19 chr9 57781523 57781629 -66294543 - MIRb SINE MIR -3 265 151 6 1025 1161 81 6 0 chr9 57782096 57782256 -66293916 + B2_Mm2 SINE B2 1 161 -34 6 1025 384 77 0 0 chr9 57782258 57782310 -66293862 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 6 1025 315 227 61 0 chr9 57782399 57782465 -66293707 + B3A SINE B2 85 154 -44 6 1025 720 33 0 0 chr9 57782468 57782559 -66293613 + (CA)n Simple_repeat Simple_repeat 2 92 0 6 1025 552 239 0 26 chr9 57783119 57783235 -66292937 + PB1D7 SINE Alu 8 120 0 6 1025 519 177 0 22 chr9 57783235 57783413 -66292759 + GA-rich Low_complexity Low_complexity 1 174 0 6 1025 351 60 0 0 chr9 57784242 57784292 -66291880 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6 1025 837 220 137 6 chr9 57784292 57784475 -66291697 - B3 SINE B2 -9 207 1 6 1025 294 296 120 0 chr9 57784548 57784673 -66291499 + Charlie8 DNA MER1_type 92 231 -2197 6 1025 408 339 87 50 chr9 57785790 57786038 -66290134 + MIR SINE MIR 17 262 0 6 1025 30 0 0 0 chr9 57788138 57788168 -66288004 + GC_rich Low_complexity Low_complexity 1 30 0 6 1025 194 62 0 30 chr9 57788636 57788669 -66287503 + (CCCCCG)n Simple_repeat Simple_repeat 4 35 0 6 1025 450 0 0 0 chr9 57790204 57790254 -66285918 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1025 672 91 0 0 chr9 57791358 57791468 -66284704 + (GA)n Simple_repeat Simple_repeat 1 110 0 6 1025 692 205 0 16 chr9 57792030 57792159 -66284013 - B1_Mur1 SINE Alu -22 127 1 6 1025 323 232 16 118 chr9 57792048 57792175 -66283997 - MT2B LTR ERVL -338 263 150 6 1025 248 289 103 14 chr9 57793363 57793505 -66282667 - MIRm SINE MIR -15 193 46 6 1025 423 312 62 34 chr9 57794980 57795191 -66280981 + MIR SINE MIR 16 232 -36 6 1025 221 42 0 78 chr9 57795242 57795293 -66280879 + (CCCCCT)n Simple_repeat Simple_repeat 5 51 0 6 1025 221 329 0 0 chr9 57795868 57795938 -66280234 + MIRc SINE MIR 121 190 -78 6 1025 228 342 13 0 chr9 57800125 57800201 -66275971 + L3b LINE CR1 188 264 -218 6 1025 224 91 23 0 chr9 57800314 57800358 -66275814 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 6 1025 287 281 39 123 chr9 57801731 57801885 -66274287 + MIR SINE MIR 16 156 -106 6 1026 217 211 0 0 chr9 57804900 57804938 -66271234 + polypyrimidine Low_complexity Low_complexity 1 38 0 6 1026 706 182 0 16 chr9 57805585 57805708 -66270464 + B1_Mur1 SINE Alu 8 128 -21 6 1026 664 282 67 5 chr9 57807296 57807520 -66268652 + L1MD3 LINE L1 7729 7966 -29 6 1026 411 373 33 0 chr9 57807570 57807720 -66268452 + MIRb SINE MIR 21 175 -93 6 1026 67 55 0 0 chr9 57811329 57811438 -66264734 + AT_rich Low_complexity Low_complexity 1 109 0 6 1026 986 177 27 0 chr9 57811445 57811631 -66264541 - B3 SINE B2 0 216 26 6 1026 279 339 17 17 chr9 57813195 57813312 -66262860 + L2a LINE L2 3310 3426 0 6 1026 745 166 71 7 chr9 57814252 57814392 -66261780 - B1_Mur2 SINE Alu 0 149 1 6 1026 692 245 29 96 chr9 57814407 57814615 -66261557 - B3A SINE B2 -4 194 1 6 1026 442 305 55 28 chr9 57814638 57814783 -66261389 - B1F2 SINE Alu 0 149 1 6 1026 337 171 65 54 chr9 57814783 57814799 -66261373 + MER33 DNA MER1_type 229 242 -82 6 1026 363 44 0 0 chr9 57814799 57814844 -66261328 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1026 337 171 65 54 chr9 57814844 57814920 -66261252 + MER33 DNA MER1_type 243 322 -2 6 1026 298 300 40 10 chr9 57814921 57815022 -66261150 + L2a LINE L2 3321 3424 -2 6 1026 198 325 80 11 chr9 57816515 57816669 -66259503 - MIR SINE MIR -78 190 30 6 1026 1256 305 21 21 chr9 57816965 57817343 -66258829 - MTE2a LTR MaLR -1 378 1 6 1026 209 83 0 27 chr9 57818263 57818300 -66257872 + (TGGGGG)n Simple_repeat Simple_repeat 5 40 0 6 1026 1157 48 0 70 chr9 57818536 57818694 -66257478 + B1_Mus2 SINE Alu 1 147 0 6 1026 207 0 0 0 chr9 57818694 57818717 -66257455 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1026 627 209 6 32 chr9 57818928 57819086 -66257086 + RSINE1 SINE B4 10 163 -2 6 1026 420 20 0 0 chr9 57819188 57819237 -66256935 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1026 245 290 65 0 chr9 57819239 57819301 -66256871 - ID4_ SINE ID -13 70 5 6 1026 229 250 21 0 chr9 57819929 57819977 -66256195 + ID4 SINE ID 2 50 -33 6 1026 512 324 156 23 chr9 57820591 57821194 -66254978 - L1MB4 LINE L1 0 6180 5498 6 1026 324 0 0 0 chr9 57821754 57821790 -66254382 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1026 216 0 0 0 chr9 57821790 57821813 -66254359 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1026 3189 50 0 0 chr9 57822747 57823129 -66253043 - L1Md_T LINE L1 0 6582 6201 6 1026 311 323 40 35 chr9 57824037 57824210 -66251962 + L1MC4a LINE L1 5714 5887 -1995 6 1026 262 287 63 62 chr9 57824336 57824531 -66251641 - MIRb SINE MIR -36 232 24 6 1026 585 196 35 33 chr9 57824550 57824695 -66251477 - B1_Mur2 SINE Alu 0 149 3 6 1026 678 216 67 51 chr9 57824967 57825162 -66251010 + B3A SINE B2 1 198 0 6 1026 1280 175 9 36 chr9 57825416 57825636 -66250536 + B3 SINE B2 1 214 -2 7 1026 366 276 0 0 chr9 57825655 57825731 -66250441 + RSINE1 SINE B4 66 141 -24 7 1026 234 308 55 0 chr9 57828957 57829048 -66247124 + L2a LINE L2 3072 3167 -259 7 1026 3042 43 52 0 chr9 57829540 57829909 -66246263 - RLTR10 LTR ERVK -2 388 1 7 1026 8111 32 10 10 chr9 57829909 57830906 -66245266 - RLTR10-int LTR ERVK -1 1986 990 7 1026 618 323 25 21 chr9 57830988 57831273 -66244899 - RLTR10-int LTR ERVK -5987 1594 1309 7 1026 3963 46 39 3 chr9 57831428 57832279 -66243893 - RLTR10-int LTR ERVK -995 992 54 7 1026 1331 81 42 21 chr9 57832279 57832468 -66243704 - B2_Mm1a SINE B2 0 193 1 7 1026 3297 64 53 2 chr9 57832468 57832504 -66243668 - RLTR10-int LTR ERVK -1934 53 1 7 1026 2789 54 105 0 chr9 57832506 57832857 -66243315 - RLTR10 LTR ERVK -2 388 1 7 1026 707 274 17 71 chr9 57833250 57833490 -66242682 - MER115 DNA Tip100 -4 689 463 7 1026 203 178 22 0 chr9 57834745 57834790 -66241382 + C-rich Low_complexity Low_complexity 3 48 0 7 1026 180 0 0 0 chr9 57835088 57835108 -66241064 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1026 195 364 30 0 chr9 57836218 57836317 -66239855 + MIR SINE MIR 18 119 -89 7 1026 317 351 61 74 chr9 57836693 57837019 -66239153 - L2b LINE L2 -20 3355 3034 7 1026 1478 209 63 99 chr9 57838768 57839202 -66236970 - MTD LTR MaLR -14 405 1 7 1026 1216 68 0 0 chr9 57839480 57839627 -66236545 - B1_Mus1 SINE Alu -1 147 1 7 1026 261 178 69 0 chr9 57839778 57839845 -66236327 - MIR SINE MIR -149 127 56 7 1026 671 192 13 0 chr9 57840317 57840468 -66235704 + CT-rich Low_complexity Low_complexity 1 153 0 7 1026 718 167 8 0 chr9 57840482 57840602 -66235570 - B1_Mur1 SINE Alu -9 140 20 7 1026 459 0 0 0 chr9 57840624 57840675 -66235497 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1026 272 306 65 1 chr9 57841371 57841499 -66234673 - MIR3 SINE MIR -38 170 42 7 1026 270 0 0 0 chr9 57841499 57841529 -66234643 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1026 262 312 55 28 chr9 57841529 57841569 -66234603 - MIRm SINE MIR -233 43 4 7 1026 180 0 0 0 chr9 57841588 57841608 -66234564 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1026 671 211 146 10 chr9 57841775 57841981 -66234191 + MER63D DNA AcHobo 36 269 -792 7 1026 502 202 76 9 chr9 57842901 57843006 -66233166 - PB1D9 SINE Alu -8 112 1 7 1026 196 85 0 60 chr9 57843474 57843524 -66232648 + (TTTTTG)n Simple_repeat Simple_repeat 6 52 0 7 1026 349 208 0 14 chr9 57843976 57844049 -66232123 - MLT1A1 LTR MaLR -306 102 31 7 1026 234 179 0 0 chr9 57844236 57844275 -66231897 - RMER15 LTR ERVL -113 462 424 7 1026 359 341 51 0 chr9 57844277 57844415 -66231757 - Lx8 LINE L1 -214 7259 7115 7 1026 1226 258 131 28 chr9 57844584 57845011 -66231161 - Lx8 LINE L1 -626 6847 6377 7 1026 1234 14 7 14 chr9 57845209 57845355 -66230817 + B1_Mm SINE Alu 1 145 -2 7 1026 189 0 0 0 chr9 57846446 57846467 -66229705 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1026 625 270 34 6 chr9 57846852 57847027 -66229145 + B3A SINE B2 1 180 -18 7 1026 305 62 21 0 chr9 57847128 57847176 -66228996 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1026 504 279 61 6 chr9 57847255 57847435 -66228737 + ORSL-2b DNA Tip100 93 282 -226 7 1026 588 84 0 0 chr9 57848023 57848106 -66228066 + (GA)n Simple_repeat Simple_repeat 2 84 0 7 1026 374 238 12 0 chr9 57848544 57848624 -66227548 + ID4 SINE ID 3 83 0 7 1026 1890 217 22 2 chr9 57848916 57848992 -66227180 - MTD LTR MaLR 0 419 341 7 1026 3219 58 8 5 chr9 57848992 57849391 -66226781 - MTB LTR MaLR 0 400 1 7 1026 1890 217 22 2 chr9 57849391 57849725 -66226447 - MTD LTR MaLR -79 340 2 7 1026 794 238 108 62 chr9 57849842 57850102 -66226070 + B4A SINE B4 3 274 -18 7 1026 243 0 0 0 chr9 57850152 57850179 -66225993 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1026 459 0 0 0 chr9 57850179 57850229 -66225943 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1026 834 209 51 46 chr9 57850427 57850623 -66225549 - B3A SINE B2 0 198 2 7 1026 422 357 0 23 chr9 57850742 57850914 -66225258 - MIRb SINE MIR -67 201 34 7 1026 228 309 32 11 chr9 57851309 57851404 -66224768 + MLT1K LTR MaLR 492 588 -7 7 1026 738 223 144 5 chr9 57851679 57851873 -66224299 + ID_B1 SINE B4 1 221 -3 7 1026 246 350 41 24 chr9 57852313 57852436 -66223736 + MLT1J LTR MaLR 126 250 -262 7 1026 227 216 0 26 chr9 57852440 57852516 -66223656 + C-rich Low_complexity Low_complexity 1 74 0 7 1026 322 289 86 0 chr9 57852678 57852806 -66223366 + MLT1J LTR MaLR 372 510 -2 7 1026 288 0 0 0 chr9 57852832 57852864 -66223308 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1026 21 0 0 0 chr9 57853226 57853247 -66222925 + GC_rich Low_complexity Low_complexity 1 21 0 7 1026 27 0 0 0 chr9 57854642 57854669 -66221503 + AT_rich Low_complexity Low_complexity 1 27 0 7 1026 306 189 38 75 chr9 57854673 57854753 -66221419 - ID_B1 SINE B4 0 224 148 7 1026 373 224 0 35 chr9 57854753 57854776 -66221396 - PB1D9 SINE Alu -1 148 53 7 1026 486 188 0 30 chr9 57854978 57855077 -66221095 + B1_Mur1 SINE Alu 54 149 0 7 1026 1680 31 0 0 chr9 57855458 57855651 -66220521 - B2_Mm1a SINE B2 0 193 1 7 1026 689 333 119 52 chr9 57855969 57856472 -66219700 + MLT1F1 LTR MaLR 14 550 -19 7 1026 243 0 0 0 chr9 57857298 57857325 -66218847 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1026 532 258 26 3 chr9 57857332 57857461 -66218711 - B1F SINE Alu -7 142 14 7 1026 1122 164 69 5 chr9 57857525 57857727 -66218445 - B3 SINE B2 -1 215 1 7 1026 246 162 36 36 chr9 57857727 57857810 -66218362 + (TTATA)n Simple_repeat Simple_repeat 2 84 0 7 1026 753 149 0 0 chr9 57857974 57858149 -66218023 + (TC)n Simple_repeat Simple_repeat 2 176 0 7 1026 27 0 0 0 chr9 57858211 57858238 -66217934 + AT_rich Low_complexity Low_complexity 1 27 0 7 1026 1222 61 0 0 chr9 57858243 57858390 -66217782 - B1_Mus1 SINE Alu -1 147 1 7 1026 741 261 121 0 chr9 57858394 57858593 -66217579 - B4A SINE B4 -68 224 2 7 1026 202 189 109 36 chr9 57859795 57859850 -66216322 + MIRm SINE MIR 104 162 -46 7 1026 392 330 30 46 chr9 57859948 57860158 -66216014 + MIRb SINE MIR 2 215 -47 7 1026 347 238 60 0 chr9 57861097 57861181 -66214991 - ID_B1 SINE B4 -8 216 128 7 1026 581 208 117 0 chr9 57861436 57861556 -66214616 + B1_Mur1 SINE Alu 1 134 -15 7 1026 273 326 98 39 chr9 57861631 57861733 -66214439 + PB1D10 SINE Alu 1 108 -9 7 1026 280 241 0 0 chr9 57861811 57861869 -66214303 + PB1D10 SINE Alu 8 65 -52 7 1026 213 156 15 45 chr9 57861880 57861901 -66214271 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 7 1026 679 186 253 62 chr9 57861901 57862079 -66214093 + B3 SINE B2 5 216 0 7 1026 213 156 15 45 chr9 57862079 57862124 -66214048 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 7 1026 1023 9 0 0 chr9 57863189 57863305 -66212867 + (CTGGGG)n Simple_repeat Simple_repeat 1 116 0 7 1026 248 178 0 0 chr9 57863524 57863574 -66212598 - B3A SINE B2 -140 55 6 7 1026 414 0 0 0 chr9 57864256 57864302 -66211870 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1026 289 312 0 0 chr9 57864509 57864573 -66211599 - L2b LINE L2 -20 3355 3292 7 1026 218 149 46 0 chr9 57864664 57864751 -66211421 + (TA)n Simple_repeat Simple_repeat 1 91 0 7 1026 408 258 104 40 chr9 57864770 57864895 -66211277 - B1_Mur2 SINE Alu -14 135 3 7 1026 311 214 16 0 chr9 57864903 57864979 -66211193 + L1M5 LINE L1 5471 5547 -615 7 1026 222 171 0 0 chr9 57865146 57865187 -66210985 + A-rich Low_complexity Low_complexity 1 41 0 7 1026 535 281 118 39 chr9 57865544 57865722 -66210450 - B3A SINE B2 -5 193 2 7 1026 506 154 39 0 chr9 57865772 57865876 -66210296 + B1_Mus1 SINE Alu 1 108 -40 7 1026 186 321 81 45 chr9 57866492 57866603 -66209569 - L2b LINE L2 -230 3157 3043 7 1026 701 253 88 66 chr9 57867501 57867652 -66208520 + B3A SINE B2 1 160 -38 7 1026 389 70 18 0 chr9 57867652 57867709 -66208463 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1026 405 253 88 66 chr9 57867709 57867739 -66208433 + B2_Mm2 SINE B2 156 185 -10 7 1026 851 227 138 36 chr9 57867925 57868172 -66208000 + B4 SINE B4 17 288 -4 7 1026 823 239 32 8 chr9 57868200 57868391 -66207781 + B3 SINE B2 2 188 -7 7 1026 945 233 4 133 chr9 57868943 57869100 -66207072 - ID_B1 SINE B4 -4 220 96 7 1026 1008 204 75 0 chr9 57869100 57869301 -66206871 - B3 SINE B2 0 216 1 7 1026 945 233 4 133 chr9 57869301 57869391 -66206781 - ID_B1 SINE B4 -129 95 5 7 1026 646 230 0 0 chr9 57869411 57869537 -66206635 - B1F SINE Alu -1 148 23 7 1026 395 254 239 0 chr9 57869584 57869785 -66206387 - MLT1B LTR MaLR -27 363 115 7 1026 893 111 7 0 chr9 57869865 57870000 -66206172 + B1_Mur3 SINE Alu 14 149 0 7 1026 542 214 0 23 chr9 57870004 57870134 -66206038 + GA-rich Low_complexity Low_complexity 2 128 0 7 1026 1287 84 0 0 chr9 57870134 57870312 -66205860 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 7 1026 542 214 0 23 chr9 57870312 57870339 -66205833 + polypurine Low_complexity Low_complexity 129 155 0 7 1026 1158 122 0 0 chr9 57870339 57870519 -66205653 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1026 542 214 0 23 chr9 57870519 57870532 -66205640 + polypurine Low_complexity Low_complexity 156 168 0 7 1026 1620 48 3 11 chr9 57870532 57870895 -66205277 + (GAA)n Simple_repeat Simple_repeat 1 359 0 7 1026 315 208 59 12 chr9 57871471 57871561 -66204611 - MIR SINE MIR -92 176 70 7 1026 511 202 0 9 chr9 57872243 57872348 -66203824 - B1_Mm SINE Alu -39 108 5 7 1026 423 0 0 0 chr9 57872394 57872441 -66203731 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1026 382 228 341 12 chr9 57872576 57872740 -66203432 - ID_B1 SINE B4 -6 218 1 7 1026 730 164 7 7 chr9 57875571 57875718 -66200454 + CT-rich Low_complexity Low_complexity 3 149 0 7 1026 1480 84 16 0 chr9 57876279 57876469 -66199703 + B2_Mm2 SINE B2 2 194 -1 7 1026 417 314 6 76 chr9 57877077 57877249 -66198923 + ID_B1 SINE B4 58 217 -7 8 1026 794 159 0 29 chr9 57877120 57877256 -66198916 + B1_Mur4 SINE Alu 19 150 0 8 1026 1035 223 63 5 chr9 57878462 57878669 -66197503 - ID_B1 SINE B4 -4 220 2 8 1026 180 125 0 0 chr9 57881375 57881407 -66194765 + (CTCTG)n Simple_repeat Simple_repeat 4 35 0 8 1026 307 326 119 52 chr9 57882108 57882302 -66193870 - MIRb SINE MIR -3 259 53 8 1026 228 214 0 0 chr9 57882323 57882379 -66193793 + T-rich Low_complexity Low_complexity 1 56 0 8 1026 629 155 7 0 chr9 57882445 57882593 -66193579 + (TG)n Simple_repeat Simple_repeat 1 149 0 8 1026 939 139 0 0 chr9 57882608 57882788 -66193384 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1026 465 348 37 68 chr9 57882794 57883090 -66193082 - B4 SINE B4 -4 288 2 8 1026 405 0 0 0 chr9 57883155 57883200 -66192972 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1026 531 0 0 0 chr9 57883200 57883258 -66192914 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 1026 438 36 0 0 chr9 57883709 57883765 -66192407 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1026 387 0 0 0 chr9 57890870 57890913 -66185259 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1026 210 389 100 28 chr9 57890953 57891133 -66185039 + MIRb SINE MIR 70 262 -6 8 1026 349 234 225 0 chr9 57892005 57892116 -66184056 + B1F SINE Alu 12 147 -2 8 1026 233 57 0 28 chr9 57892567 57892603 -66183569 + (AGGGGG)n Simple_repeat Simple_repeat 3 37 0 8 1026 275 244 92 41 chr9 57893168 57893297 -66182875 + MIRb SINE MIR 34 163 -45 8 1026 403 301 18 35 chr9 57893373 57893542 -66182630 + MER90 LTR ERV1 172 337 -238 8 1026 480 117 0 0 chr9 57893966 57894043 -66182129 + (TG)n Simple_repeat Simple_repeat 2 78 0 8 1026 363 248 32 64 chr9 57894184 57894309 -66181863 - RMER30 DNA MER1_type -1 201 81 8 1026 275 353 53 7 chr9 57894196 57894347 -66181825 + Charlie12 DNA MER1_type 7 164 -2709 8 1026 1259 234 108 9 chr9 57894851 57895192 -66180980 + MTE2b LTR MaLR 1 375 -4 8 1026 1694 190 111 11 chr9 57895268 57895645 -66180527 - MTD LTR MaLR 0 419 5 8 1026 501 17 0 0 chr9 57896844 57896902 -66179270 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1026 236 303 43 33 chr9 57897078 57897170 -66179002 + MER115 DNA Tip100 61 153 -540 8 1026 264 173 0 37 chr9 57898403 57898457 -66177715 - MIR SINE MIR -60 148 97 8 1026 189 211 0 0 chr9 57898803 57898841 -66177331 - MIRc SINE MIR -148 120 83 8 1026 236 324 44 18 chr9 57899920 57900033 -66176139 - MIRc SINE MIR -83 185 70 8 1026 455 301 17 6 chr9 57900154 57900331 -66175841 + CT-rich Low_complexity Low_complexity 2 180 0 8 1026 329 109 0 18 chr9 57900379 57900435 -66175737 + (TATG)n Simple_repeat Simple_repeat 1 55 0 8 1026 210 310 46 0 chr9 57901159 57901246 -66174926 - MIR3 SINE MIR -32 176 86 8 1026 215 280 13 13 chr9 57902065 57902141 -66174031 + GA-rich Low_complexity Low_complexity 1 76 0 8 1026 267 157 0 0 chr9 57902163 57902214 -66173958 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1026 636 218 0 0 chr9 57902229 57902403 -66173769 + (TG)n Simple_repeat Simple_repeat 2 175 0 8 1026 464 156 11 0 chr9 57904987 57905077 -66171095 + CT-rich Low_complexity Low_complexity 4 94 0 8 1026 246 343 107 35 chr9 57906286 57906689 -66169483 + L2b LINE L2 2934 3368 -19 8 1026 582 15 0 0 chr9 57906823 57906890 -66169282 + (TCC)n Simple_repeat Simple_repeat 2 68 0 8 1026 326 78 0 0 chr9 57907014 57907065 -66169107 + B1_Mur4 SINE Alu 100 150 0 8 1026 288 111 0 0 chr9 57907075 57907129 -66169043 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1026 222 94 0 0 chr9 57907133 57907165 -66169007 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1026 252 0 0 0 chr9 57907170 57907198 -66168974 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 8 1026 865 231 39 39 chr9 57907488 57907691 -66168481 + B3 SINE B2 14 216 0 8 1026 627 244 0 64 chr9 57910291 57910431 -66165741 + RSINE1 SINE B4 11 141 -24 8 1026 396 59 0 0 chr9 57910432 57910483 -66165689 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1026 211 238 46 31 chr9 57910786 57910851 -66165321 - MIRm SINE MIR -96 180 115 8 1026 180 0 0 0 chr9 57911297 57911317 -66164855 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1026 360 0 0 0 chr9 57913820 57913860 -66162312 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1026 339 250 11 35 chr9 57913866 57913953 -66162219 - RSINE1 SINE B4 -38 127 43 8 1026 663 317 87 20 chr9 57914630 57914929 -66161243 + MLT1E2 LTR MaLR 171 489 -138 8 1026 512 216 106 32 chr9 57915671 57915810 -66160362 + ID_B1 SINE B4 91 246 -46 8 1026 296 184 35 106 chr9 57915840 57915925 -66160247 - ID4 SINE ID -2 81 3 8 1026 258 355 84 0 chr9 57915984 57916091 -66160081 - ID_B1 SINE B4 -31 193 78 8 1026 279 140 0 0 chr9 57916156 57916206 -66159966 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 1026 219 273 45 133 chr9 57916249 57916378 -66159794 - MIRm SINE MIR -129 147 24 8 1026 953 136 14 0 chr9 57916661 57916801 -66159371 + B1_Mus1 SINE Alu 3 144 -4 8 1026 450 0 0 0 chr9 57917192 57917242 -66158930 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1026 291 54 0 0 chr9 57917875 57917912 -66158260 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 8 1026 481 267 0 24 chr9 57918101 57918224 -66157948 + ID_B1 SINE B4 91 210 -14 8 1026 203 309 0 8 chr9 57918328 57918455 -66157717 + (TG)n Simple_repeat Simple_repeat 1 126 0 8 1026 658 264 0 79 chr9 57918455 57918632 -66157540 - RSINE1 SINE B4 0 165 3 8 1026 396 0 0 0 chr9 57920035 57920079 -66156093 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1026 294 308 7 78 chr9 57921531 57921672 -66154500 + MLT1L LTR MaLR 141 271 -339 8 1026 241 267 17 0 chr9 57922041 57922101 -66154071 - MIRb SINE MIR -159 109 49 8 1026 198 275 70 70 chr9 57922151 57922237 -66153935 - MIR3 SINE MIR -14 194 109 8 1026 430 329 88 0 chr9 57923085 57923222 -66152950 + RSINE1 SINE B4 4 152 -13 8 1026 356 279 10 0 chr9 57923297 57923401 -66152771 + PB1D10 SINE Alu 6 110 -7 8 1026 782 243 137 5 chr9 57923480 57923690 -66152482 + B4A SINE B4 1 238 -54 8 1026 782 218 0 7 chr9 57923690 57923833 -66152339 + RSINE1 SINE B4 4 145 -20 8 1026 251 54 27 0 chr9 57923939 57923976 -66152196 + (TCC)n Simple_repeat Simple_repeat 3 40 0 8 1026 268 320 149 11 chr9 57926325 57926499 -66149673 + L2a LINE L2 3202 3399 -27 8 1026 191 303 0 73 chr9 57927557 57927653 -66148519 + MIRc SINE MIR 116 204 -64 8 1026 435 83 0 0 chr9 57928303 57928363 -66147809 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1026 302 324 69 26 chr9 57929164 57929361 -66146811 - MIR SINE MIR -5 257 21 8 1026 215 265 71 29 chr9 57929418 57929488 -66146684 + L2b LINE L2 3303 3375 0 8 1026 522 234 34 34 chr9 57930162 57930308 -66145864 + RMER15 LTR ERVL 268 413 -162 8 1026 1583 195 106 14 chr9 57930310 57930694 -66145478 + MTD LTR MaLR 2 402 -17 8 1026 942 190 75 61 chr9 57931137 57931350 -66144822 + B3 SINE B2 1 216 0 8 1026 965 234 28 9 chr9 57931408 57931619 -66144553 - B3 SINE B2 -1 215 1 8 1026 242 299 0 15 chr9 57931970 57932038 -66144134 + G-rich Low_complexity Low_complexity 1 67 0 8 1026 200 250 132 12 chr9 57932323 57932416 -66143756 + MIRb SINE MIR 26 131 -137 8 1026 192 77 0 0 chr9 57933296 57933322 -66142850 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 8 1027 362 272 0 0 chr9 57934107 57934188 -66141984 + Tigger15a DNA TcMar 630 710 -5 8 1027 221 119 24 0 chr9 57936819 57936861 -66139311 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1027 909 243 119 37 chr9 57936966 57937235 -66138937 - B4A SINE B4 0 292 2 8 1027 560 70 0 0 chr9 57938252 57938363 -66137809 + B2_Mm2 SINE B2 2 153 -42 8 1027 549 0 0 0 chr9 57938363 57938424 -66137748 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 8 1027 910 239 133 7 chr9 57938775 57939038 -66137134 + MTD LTR MaLR 100 417 -2 8 1027 637 248 80 0 chr9 57939184 57939321 -66136851 + B1F2 SINE Alu 2 149 0 8 1027 186 336 126 7 chr9 57940147 57940282 -66135890 + MIRb SINE MIR 2 152 -116 8 1027 294 148 6 4 chr9 57941127 57941186 -66134986 - MIR SINE MIR -144 124 65 8 1027 501 17 0 0 chr9 57941186 57941244 -66134928 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 8 1027 270 247 35 23 chr9 57941244 57941271 -66134901 - MIRc SINE MIR -204 64 37 8 1027 195 226 116 21 chr9 57941940 57942035 -66134137 - L2 LINE L2 -1232 2187 2084 8 1027 624 237 92 57 chr9 57942655 57942883 -66133289 - L1MA9 LINE L1 -223 6089 5854 8 1027 590 223 77 0 chr9 57942985 57943115 -66133057 - RSINE1 SINE B4 -15 150 11 8 1027 303 312 26 53 chr9 57943122 57943274 -66132898 - L1MA9 LINE L1 -810 5502 5355 8 1027 858 270 32 18 chr9 57943283 57943502 -66132670 - ID_B1 SINE B4 0 224 3 8 1027 258 56 0 0 chr9 57943561 57943597 -66132575 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1027 386 203 0 75 chr9 57943605 57943685 -66132487 - ID4 SINE ID -9 74 1 8 1027 683 185 30 0 chr9 57943740 57943875 -66132297 - B1_Mur1 SINE Alu -2 147 9 8 1027 345 256 55 148 chr9 57943875 57943941 -66132231 - B4 SINE B4 -68 223 42 8 1027 555 244 98 57 chr9 57943949 57944193 -66131979 - L1MA9 LINE L1 -892 5248 4995 8 1027 644 213 21 28 chr9 57946626 57946771 -66129401 + ID_B1 SINE B4 80 223 -1 8 1027 232 315 11 53 chr9 57946939 57947033 -66129139 + RMER30 DNA MER1_type 112 201 -1 8 1027 243 0 0 0 chr9 57947226 57947253 -66128919 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 8 1027 267 242 40 0 chr9 57948734 57948833 -66127339 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 9 1027 369 0 0 0 chr9 57948864 57948905 -66127267 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1027 306 297 0 0 chr9 57949181 57949255 -66126917 + ID4 SINE ID 8 81 -2 9 1027 303 235 29 14 chr9 57949323 57949392 -66126780 + ID4_ SINE ID 3 72 -11 9 1027 670 213 196 21 chr9 57950426 57950661 -66125511 + B4A SINE B4 5 280 -12 9 1027 289 323 23 46 chr9 57951129 57951259 -66124913 + MIRc SINE MIR 24 150 -118 9 1027 268 352 124 16 chr9 57952590 57952775 -66123397 - MIRb SINE MIR -14 254 50 9 1027 192 250 130 0 chr9 57954406 57954498 -66121674 + L2b LINE L2 3266 3369 -6 9 1027 732 232 0 0 chr9 57954728 57954870 -66121302 - B1F2 SINE Alu -2 147 6 9 1027 278 306 22 82 chr9 57954753 57954888 -66121284 - MT2B LTR ERVL -323 278 152 9 1027 643 270 50 50 chr9 57954907 57955106 -66121066 + ID_B1 SINE B4 2 200 -24 9 1027 393 188 0 0 chr9 57955110 57955190 -66120982 + GA-rich Low_complexity Low_complexity 2 81 0 9 1027 202 143 29 0 chr9 57956102 57956137 -66120035 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 9 1027 222 118 0 0 chr9 57956144 57956178 -66119994 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1027 270 0 0 0 chr9 57956190 57956220 -66119952 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1027 24 32 0 0 chr9 57956249 57956280 -66119892 + AT_rich Low_complexity Low_complexity 1 31 0 9 1027 387 0 0 0 chr9 57956341 57956384 -66119788 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 9 1027 428 292 29 0 chr9 57956386 57956523 -66119649 + MER2 DNA MER2_type 89 229 -116 9 1027 371 290 7 7 chr9 57956531 57956639 -66119533 + PB1D10 SINE Alu 1 105 -12 9 1027 348 138 0 0 chr9 57956639 57956704 -66119468 + (CTA)n Simple_repeat Simple_repeat 2 66 0 9 1027 225 65 0 0 chr9 57956728 57956759 -66119413 + (CTA)n Simple_repeat Simple_repeat 1 31 0 9 1027 395 312 39 16 chr9 57956769 57956896 -66119276 + MER2 DNA MER2_type 209 338 -7 9 1027 329 252 77 10 chr9 57957207 57957311 -66118861 - MIRb SINE MIR -65 203 93 9 1027 468 0 0 0 chr9 57957609 57957661 -66118511 + (CATAT)n Simple_repeat Simple_repeat 3 54 0 9 1027 214 196 0 21 chr9 57958625 57958672 -66117500 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 9 1027 183 189 0 0 chr9 57959198 57959251 -66116921 + CT-rich Low_complexity Low_complexity 1 53 0 9 1027 195 42 0 0 chr9 57959272 57959296 -66116876 + (TC)n Simple_repeat Simple_repeat 2 25 0 9 1027 447 19 0 0 chr9 57959298 57959350 -66116822 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1027 320 291 21 69 chr9 57959733 57959921 -66116251 - MIRb SINE MIR -69 199 21 9 1027 360 0 0 0 chr9 57960637 57960677 -66115495 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1027 200 225 25 0 chr9 57962984 57963024 -66113148 - L2c LINE L2 -231 3156 3116 9 1027 258 123 45 15 chr9 57964272 57964338 -66111834 + GA-rich Low_complexity Low_complexity 4 71 0 9 1027 192 369 54 47 chr9 57966006 57966154 -66110018 - MIRm SINE MIR -94 182 34 9 1027 505 297 48 18 chr9 57966758 57966926 -66109246 - L2a LINE L2 0 3426 3254 9 1027 658 241 238 33 chr9 57966934 57967174 -66108998 + B4 SINE B4 2 290 -2 9 1027 261 282 0 0 chr9 57967212 57967336 -66108836 + (CA)n Simple_repeat Simple_repeat 1 124 0 9 1027 216 67 0 0 chr9 57967413 57967443 -66108729 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1027 249 173 0 0 chr9 57967989 57968003 -66108169 + (TA)n Simple_repeat Simple_repeat 1 14 0 9 1027 279 0 0 0 chr9 57968003 57968034 -66108138 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1027 249 173 0 0 chr9 57968034 57968071 -66108101 + (TA)n Simple_repeat Simple_repeat 2 38 0 9 1027 924 152 218 11 chr9 57968101 57968280 -66107892 - B3 SINE B2 0 216 1 9 1027 181 397 59 25 chr9 57968637 57968756 -66107416 - MIRb SINE MIR -92 176 54 9 1027 180 0 0 0 chr9 57969689 57969709 -66106463 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1027 697 255 18 24 chr9 57969750 57969915 -66106257 + RSINE1 SINE B4 1 164 -1 9 1027 332 291 57 68 chr9 57969756 57969916 -66106256 + B2_Mm2 SINE B2 6 160 -35 9 1027 566 99 11 0 chr9 57969916 57970007 -66106165 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 9 1027 332 291 57 68 chr9 57970007 57970038 -66106134 + B2_Mm2 SINE B2 161 195 0 9 1027 702 233 145 0 chr9 57970046 57970218 -66105954 + ID_B1 SINE B4 5 201 -23 9 1027 354 45 0 0 chr9 57970258 57970302 -66105870 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 1027 509 267 58 72 chr9 57970312 57970590 -66105582 - L1MB2 LINE L1 -46 6125 5852 9 1027 1075 217 14 0 chr9 57970905 57971112 -66105060 + B3 SINE B2 2 211 -5 9 1027 1089 58 0 0 chr9 57972823 57972977 -66103195 + (TG)n Simple_repeat Simple_repeat 2 155 0 9 1027 734 264 82 0 chr9 57973042 57973224 -66102948 + B4 SINE B4 24 220 -72 9 1027 369 222 0 0 chr9 57973274 57973409 -66102763 + (CA)n Simple_repeat Simple_repeat 1 135 0 9 1027 246 32 0 0 chr9 57973409 57973440 -66102732 + (GA)n Simple_repeat Simple_repeat 1 31 0 9 1027 394 289 0 0 chr9 57973491 57973581 -66102591 + B1F SINE Alu 1 90 -59 9 1027 354 345 62 0 chr9 57974570 57974794 -66101378 - MLT1J LTR MaLR -164 348 107 9 1027 630 37 0 0 chr9 57975663 57975744 -66100428 + (CA)n Simple_repeat Simple_repeat 2 82 0 9 1027 1287 21 0 0 chr9 57975895 57976039 -66100133 + B1_Mm SINE Alu 1 144 -3 9 1027 234 0 0 0 chr9 57976039 57976065 -66100107 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 9 1027 23 0 0 0 chr9 57976065 57976088 -66100084 + AT_rich Low_complexity Low_complexity 1 23 0 9 1027 329 0 24 0 chr9 57978294 57978335 -66097837 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1027 302 267 12 5 chr9 57981355 57981439 -66094733 + L2a LINE L2 3307 3426 0 9 1027 408 305 8 33 chr9 57981466 57981588 -66094584 + RSINE1 SINE B4 2 120 -45 9 1027 216 219 0 0 chr9 57982788 57982829 -66093343 + T-rich Low_complexity Low_complexity 1 41 0 9 1027 377 264 49 68 chr9 57983050 57983229 -66092943 + MIRm SINE MIR 5 192 -84 9 1027 767 277 164 33 chr9 57984729 57985058 -66091114 - MTEa LTR MaLR -7 372 1 9 1027 230 237 34 0 chr9 57985843 57985902 -66090270 + C-rich Low_complexity Low_complexity 2 62 0 9 1027 417 379 45 0 chr9 57986140 57986317 -66089855 - MER91A DNA Tip100 -1 195 11 9 1027 228 254 85 0 chr9 57988654 57988713 -66087459 - MIR SINE MIR -119 143 80 9 1027 225 299 146 46 chr9 57989485 57989636 -66086536 - L2c LINE L2 0 3387 3222 9 1027 209 361 40 20 chr9 57989621 57989720 -66086452 + MIRm SINE MIR 86 186 -90 9 1027 571 207 25 33 chr9 57989735 57989855 -66086317 + PB1D7 SINE Alu 1 119 -1 9 1027 438 20 0 0 chr9 57989940 57989991 -66086181 + (TC)n Simple_repeat Simple_repeat 1 51 0 9 1027 272 333 24 57 chr9 57990139 57990263 -66085909 - RMER12 LTR ERVK -454 868 749 9 1027 680 281 29 17 chr9 57990218 57990392 -66085780 - B3 SINE B2 -34 182 7 9 1027 369 0 0 0 chr9 57990393 57990434 -66085738 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1027 333 0 0 0 chr9 57990907 57990944 -66085228 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1027 264 59 0 0 chr9 57990944 57990977 -66085195 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1027 261 0 0 0 chr9 57990977 57991005 -66085167 + (GA)n Simple_repeat Simple_repeat 1 29 0 9 1027 450 212 61 0 chr9 57991017 57991116 -66085056 - RSINE1 SINE B4 -42 123 19 9 1027 537 250 84 21 chr9 57991582 57991725 -66084447 + ID_B1 SINE B4 18 169 -55 9 1027 309 210 36 36 chr9 57991665 57991749 -66084423 + PB1D10 SINE Alu 29 112 -5 9 1027 180 77 0 0 chr9 57992362 57992388 -66083784 + (C)n Simple_repeat Simple_repeat 1 26 0 9 1027 207 162 0 0 chr9 57993163 57993200 -66082972 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 9 1027 246 322 67 51 chr9 57994055 57994251 -66081921 + MIRb SINE MIR 32 228 -48 9 1027 924 228 79 0 chr9 57994251 57994453 -66081719 + ID_B1 SINE B4 7 224 0 9 1027 253 307 93 30 chr9 57994476 57994642 -66081530 - MIR SINE MIR -80 188 18 9 1027 315 0 0 0 chr9 57994678 57994713 -66081459 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1027 243 0 0 0 chr9 57994716 57994743 -66081429 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 9 1027 1218 209 51 12 chr9 57994743 57994999 -66081173 - B4 SINE B4 -26 266 1 9 1027 201 275 172 22 chr9 57998284 57998418 -66077754 + L3 LINE CR1 4318 4471 -18 9 1027 322 239 8 0 chr9 57998796 57998873 -66077299 - MIRb SINE MIR -83 185 102 9 1027 224 291 0 112 chr9 57999388 57999477 -66076695 - ID4_ SINE ID -3 80 2 9 1027 186 189 0 0 chr9 58000918 58000955 -66075217 + CT-rich Low_complexity Low_complexity 3 39 0 1 1027 461 219 298 48 chr9 58002943 58003111 -66073061 - ID_B1 SINE B4 -12 212 3 2 1027 294 29 0 0 chr9 58004075 58004110 -66072062 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1027 267 276 51 82 chr9 58006164 58006322 -66069850 - MIR3 SINE MIR -45 163 11 4 1027 431 35 0 17 chr9 58007066 58007124 -66069048 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1027 381 70 0 0 chr9 58007538 58007595 -66068577 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 6 1027 180 0 0 0 chr9 58007596 58007616 -66068556 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1027 23 33 0 0 chr9 58007707 58007737 -66068435 + AT_rich Low_complexity Low_complexity 1 30 0 8 1027 536 260 39 39 chr9 58008834 58008857 -66067315 + ID_B1 SINE B4 68 222 -1 9 1027 824 144 45 0 chr9 58008857 58008989 -66067183 + B1_Mur2 SINE Alu 12 149 0 1 1027 363 130 13 25 chr9 58009013 58009092 -66067080 + GA-rich Low_complexity Low_complexity 4 81 0 1 1027 929 87 41 0 chr9 58009096 58009268 -66066904 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1027 180 196 50 67 chr9 58009289 58009349 -66066823 - L3 LINE CR1 -3516 973 915 1 1027 192 309 47 23 chr9 58009521 58009607 -66066565 - MIR3 SINE MIR -31 177 90 1 1027 1285 108 38 0 chr9 58009743 58009929 -66066243 - B2_Mm2 SINE B2 -1 194 2 1 1027 189 0 0 0 chr9 58010842 58010863 -66065309 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1027 398 261 124 33 chr9 58011708 58011939 -66064233 + L2a LINE L2 3100 3407 -19 1 1027 289 47 0 0 chr9 58011944 58011987 -66064185 + ORR1B2 LTR MaLR 59 101 -266 1 1027 1182 176 19 0 chr9 58012089 58012294 -66063878 - URR1B DNA MER1_type 0 225 17 1 1027 278 260 138 17 chr9 58012367 58012513 -66063659 - MER115 DNA Tip100 -13 680 520 2 1027 330 288 95 121 chr9 58012537 58012810 -66063362 + MLT1C LTR MaLR 169 434 -33 2 1027 1057 230 9 23 chr9 58012918 58013132 -66063040 + B3 SINE B2 1 211 -5 2 1027 703 199 24 49 chr9 58013163 58013327 -66062845 + RSINE1 SINE B4 2 161 -4 2 1027 5191 104 11 9 chr9 58013587 58014342 -66061830 - RMER6A LTR ERVK 0 756 1 2 1027 207 0 0 0 chr9 58014380 58014403 -66061769 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1027 207 167 0 0 chr9 58014889 58014925 -66061247 + CT-rich Low_complexity Low_complexity 6 41 0 2 1027 444 301 60 3 chr9 58015218 58015456 -66060716 + Lx7 LINE L1 6973 7234 -239 2 1027 1093 187 246 20 chr9 58015465 58015495 -66060677 + ORR1D1 LTR MaLR 1 36 -338 2 1027 1124 53 0 0 chr9 58015495 58015626 -66060546 + B1_Mus2 SINE Alu 1 131 -16 2 1027 1093 187 246 20 chr9 58015626 58015728 -66060444 + ORR1D1 LTR MaLR 37 163 -211 2 1027 414 0 0 0 chr9 58015728 58015774 -66060398 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1027 1093 187 246 20 chr9 58015774 58015945 -66060227 + ORR1D1 LTR MaLR 164 373 -1 2 1027 229 123 354 0 chr9 58015956 58016021 -66060151 + Lx8 LINE L1 7384 7471 -2 3 1027 206 246 0 17 chr9 58016355 58016413 -66059759 + GA-rich Low_complexity Low_complexity 1 57 0 3 1027 547 269 26 118 chr9 58017068 58017338 -66058834 + L1M5 LINE L1 5527 5771 -408 3 1027 221 200 83 0 chr9 58017449 58017509 -66058663 + B4A SINE B4 86 150 -142 3 1027 222 195 57 22 chr9 58017509 58017538 -66058634 + B1F2 SINE Alu 1 96 -21 3 1027 431 261 154 0 chr9 58017529 58017659 -66058513 + RSINE1 SINE B4 6 155 -10 3 1027 1620 32 5 0 chr9 58017693 58017879 -66058293 + B2_Mm1a SINE B2 2 188 -5 3 1027 1019 227 19 14 chr9 58018155 58018365 -66057807 - B3 SINE B2 -4 212 2 3 1027 712 171 0 0 chr9 58018800 58018905 -66057267 + B3 SINE B2 1 105 -111 3 1027 988 259 42 41 chr9 58019298 58019706 -66056466 + L1MA6 LINE L1 5436 5828 -472 4 1027 1127 245 151 22 chr9 58019707 58020024 -66056148 - ORR1D2 LTR MaLR 0 370 13 4 1027 1403 82 5 0 chr9 58020159 58020343 -66055829 + B2_Mm1t SINE B2 1 185 -8 4 1027 361 216 29 7 chr9 58020673 58020813 -66055359 + CT-rich Low_complexity Low_complexity 1 143 0 4 1027 24 0 0 0 chr9 58021084 58021108 -66055064 + AT_rich Low_complexity Low_complexity 1 24 0 4 1027 493 178 234 0 chr9 58021371 58021478 -66054694 - ID_B1 SINE B4 0 224 93 4 1027 1333 216 125 8 chr9 58021501 58021852 -66054320 - MTD LTR MaLR -21 398 7 4 1027 216 0 0 0 chr9 58022149 58022173 -66053999 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1027 1128 65 0 0 chr9 58022173 58022311 -66053861 - B1_Mus1 SINE Alu -10 138 1 4 1027 307 137 40 27 chr9 58022315 58022390 -66053782 - Lx6 LINE L1 -13 7447 7372 4 1027 342 0 0 0 chr9 58023840 58023878 -66052294 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1027 468 0 0 0 chr9 58023878 58023929 -66052243 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1027 281 247 36 40 chr9 58024150 58024243 -66051929 + B1F SINE Alu 47 144 -5 5 1027 258 196 0 61 chr9 58024263 58024312 -66051860 + ID4 SINE ID 10 55 -28 5 1027 251 28 28 0 chr9 58024328 58024364 -66051808 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1027 830 152 0 6 chr9 58024545 58024704 -66051468 + CT-rich Low_complexity Low_complexity 2 159 0 5 1027 731 283 116 53 chr9 58024862 58025242 -66050930 - MER92A LTR ERV1 0 412 9 5 1027 280 360 61 0 chr9 58025756 58025870 -66050302 - MLT1H2 LTR MaLR -3 486 366 5 1027 643 184 0 9 chr9 58026397 58026507 -66049665 + PB1D9 SINE Alu 9 117 -3 5 1027 586 261 0 0 chr9 58026536 58026651 -66049521 + B1F2 SINE Alu 22 136 -13 5 1027 425 297 54 0 chr9 58026663 58026774 -66049398 + ID_B1 SINE B4 88 204 -20 6 1027 528 16 0 0 chr9 58026792 58026853 -66049319 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1027 272 296 80 0 chr9 58026874 58026962 -66049210 + Arthur1B DNA Tip100 804 898 -327 6 1027 330 87 0 0 chr9 58026978 58027024 -66049148 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 6 1027 315 316 0 0 chr9 58027056 58027135 -66049037 + ID4 SINE ID 5 83 0 6 1027 942 295 217 37 chr9 58027176 58027686 -66048486 + MLT2F LTR ERVL 4 604 -59 6 1027 325 272 113 32 chr9 58027760 58027946 -66048226 + Arthur1B DNA Tip100 950 1150 -75 6 1027 297 75 0 0 chr9 58028129 58028169 -66048003 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1027 405 305 113 5 chr9 58028170 58028391 -66047781 + HAL1 LINE L1 2034 2278 -229 6 1027 703 168 11 33 chr9 58028782 58029153 -66047019 + (TG)n Simple_repeat Simple_repeat 1 362 0 6 1027 227 317 0 79 chr9 58029189 58029278 -66046894 - RSINE1 SINE B4 0 165 84 6 1027 294 284 124 12 chr9 58029265 58029446 -66046726 - B3 SINE B2 -2 193 4 7 1027 400 295 14 77 chr9 58029480 58029623 -66046549 - B4 SINE B4 -151 141 8 7 1027 433 298 8 8 chr9 58029682 58029804 -66046368 - ID_B1 SINE B4 -21 203 82 7 1027 288 295 8 118 chr9 58029702 58029821 -66046351 - MT2B2 LTR ERVL -326 258 153 7 1027 315 364 57 16 chr9 58029847 58029970 -66046202 + L1ME3A LINE L1 2580 2707 -3439 7 1027 189 0 0 0 chr9 58029987 58030008 -66046164 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 1027 474 183 106 11 chr9 58030017 58030111 -66046061 + RSINE1 SINE B4 3 105 -60 7 1027 342 0 0 0 chr9 58030131 58030169 -66046003 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 7 1027 825 214 7 14 chr9 58030309 58030494 -66045678 + B3 SINE B2 1 179 -14 7 1027 573 247 122 12 chr9 58030915 58031087 -66045085 + B3 SINE B2 24 214 -2 7 1027 421 313 45 77 chr9 58031161 58031407 -66044765 + L1ME3A LINE L1 3070 3307 -2839 7 1027 271 260 104 57 chr9 58031440 58031546 -66044626 + PB1D7 SINE Alu 3 113 -7 8 1027 676 259 0 26 chr9 58031574 58031725 -66044447 + B1F SINE Alu 1 147 -2 8 1027 1235 48 7 0 chr9 58031728 58031875 -66044297 + B1_Mus1 SINE Alu 1 148 0 8 1027 1117 289 108 22 chr9 58031950 58032673 -66043499 + L1MD LINE L1 4232 5045 -1101 8 1027 185 0 40 0 chr9 58032673 58032698 -66043474 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1027 675 302 56 23 chr9 58032698 58032967 -66043205 + L1MD LINE L1 5046 5323 -823 8 1027 342 0 0 0 chr9 58033126 58033164 -66043008 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1027 423 0 0 0 chr9 58033164 58033210 -66042962 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1027 285 192 0 71 chr9 58033249 58033305 -66042867 - PB1D10 SINE Alu -14 103 52 8 1027 558 244 16 8 chr9 58033318 58033489 -66042683 + L1MD LINE L1 5375 5549 -615 8 1027 459 237 168 8 chr9 58033521 58033635 -66042537 + B1F SINE Alu 3 136 -13 8 1027 243 88 0 0 chr9 58033635 58033669 -66042503 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 9 1027 320 274 18 70 chr9 58033677 58033791 -66042381 + PB1D10 SINE Alu 4 111 -6 9 1027 240 111 0 0 chr9 58033792 58033828 -66042344 + (CAAG)n Simple_repeat Simple_repeat 3 38 0 9 1027 329 267 150 15 chr9 58033934 58034067 -66042105 + L1ME3A LINE L1 4976 5126 -1020 7 1027 722 245 21 109 chr9 58034115 58034353 -66041819 + ID_B1 SINE B4 5 221 -3 9 1027 507 304 15 15 chr9 58034353 58034490 -66041682 + RSINE1 SINE B4 4 140 -25 9 1027 432 292 199 1 chr9 58034625 58035126 -66041046 + L1ME3A LINE L1 5334 5946 -227 7 1027 252 0 0 0 chr9 58035255 58035283 -66040889 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 9 1027 356 311 57 16 chr9 58035572 58035856 -66040316 + L1M5 LINE L1 2776 3072 -3074 9 1027 552 102 10 20 chr9 58036158 58036258 -66039914 + (GGGAA)n Simple_repeat Simple_repeat 1 99 0 9 1027 183 80 0 0 chr9 58036299 58036324 -66039848 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1027 498 282 50 19 chr9 58036710 58036869 -66039303 + MER3 DNA MER1_type 40 203 -6 9 1027 486 0 0 0 chr9 58036915 58036969 -66039203 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 1 1027 521 258 8 30 chr9 58036987 58037119 -66039053 - B1_Mur1 SINE Alu -18 131 3 1 1027 548 318 54 33 chr9 58037160 58037436 -66038736 + B4A SINE B4 1 282 -10 1 1027 282 227 0 0 chr9 58037454 58037529 -66038643 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1027 240 341 154 0 chr9 58037591 58037837 -66038335 - L1ME3 LINE L1 -89 6073 5790 1 1027 308 290 78 31 chr9 58037928 58038056 -66038116 - L1ME3 LINE L1 -490 5683 5550 1 1027 186 133 0 0 chr9 58038184 58038214 -66037958 + (TTCTCC)n Simple_repeat Simple_repeat 6 35 0 1 1027 3499 239 97 16 chr9 58038215 58039212 -66036960 - Lx8 LINE L1 -54 7419 6342 1 1027 396 277 40 0 chr9 58039251 58039352 -66036820 - B1F SINE Alu -2 147 43 1 1027 1489 70 16 0 chr9 58039366 58039553 -66036619 - B2_Mm2 SINE B2 -5 190 1 1 1027 197 276 119 119 chr9 58039739 58039916 -66036256 + MIR SINE MIR 86 262 0 1 1027 311 48 65 0 chr9 58040225 58040287 -66035885 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1027 1399 62 78 0 chr9 58040415 58040433 -66035739 - B2_Mm1t SINE B2 0 193 176 1 1027 207 0 0 0 chr9 58040433 58040456 -66035716 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1027 1399 62 78 0 chr9 58040456 58040616 -66035556 - B2_Mm1t SINE B2 -18 175 2 1 1027 270 0 0 0 chr9 58041729 58041759 -66034413 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1027 540 136 0 0 chr9 58042823 58042911 -66033261 + (GGA)n Simple_repeat Simple_repeat 3 90 0 1 1027 736 111 12 18 chr9 58043211 58043376 -66032796 + (CA)n Simple_repeat Simple_repeat 2 165 0 1 1027 391 157 9 9 chr9 58043405 58043514 -66032658 + (CA)n Simple_repeat Simple_repeat 1 109 0 1 1027 393 110 0 0 chr9 58043715 58043788 -66032384 + (CAGA)n Simple_repeat Simple_repeat 4 76 0 1 1027 251 257 14 0 chr9 58044303 58044377 -66031795 + C-rich Low_complexity Low_complexity 2 76 0 1 1027 315 0 0 0 chr9 58049562 58049597 -66026575 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1027 244 183 191 24 chr9 58052974 58053058 -66023114 + LTR48 LTR ERV1 115 212 -575 1 1027 225 340 114 57 chr9 58053008 58053254 -66022918 + ORSL-2a DNA Tip100 54 313 -29 1 1027 459 0 0 0 chr9 58053356 58053407 -66022765 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1027 419 208 35 52 chr9 58053599 58053763 -66022409 + B3A SINE B2 1 183 -10 1 1027 587 290 47 20 chr9 58054668 58054816 -66021356 + RSINE1 SINE B4 14 165 0 1 1027 562 208 175 102 chr9 58054845 58055022 -66021150 + B3A SINE B2 2 191 -4 1 1027 2132 252 21 25 chr9 58055275 58055792 -66020380 + RCHARR1 DNA MER1_type 7 521 -453 1 1027 1314 91 32 11 chr9 58056362 58056550 -66019622 + B2_Mm1t SINE B2 2 193 0 1 1027 216 97 0 0 chr9 58056617 58056648 -66019524 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 1027 236 130 65 0 chr9 58056657 58056703 -66019469 + B3A SINE B2 1 49 -149 1 1027 506 88 12 12 chr9 58056688 58056769 -66019403 + B2_Mm2 SINE B2 111 191 -4 1 1027 1389 202 65 30 chr9 58056756 58057124 -66019048 + RCHARR1 DNA MER1_type 512 892 -82 1 1027 245 266 0 72 chr9 58057751 58057785 -66018387 + ORR1D1-int LTR MaLR 620 643 -866 1 1027 736 155 12 20 chr9 58057785 58057927 -66018245 + B1_Mur2 SINE Alu 1 147 0 1 1027 953 239 60 57 chr9 58058099 58058414 -66017758 + ORR1D1 LTR MaLR 1 316 -58 1 1027 753 145 80 8 chr9 58058636 58058761 -66017411 - B1_Mur4 SINE Alu -15 135 2 1 1027 511 286 129 0 chr9 58058774 58058921 -66017251 - ID_B1 SINE B4 -58 166 1 1 1027 429 20 0 0 chr9 58059004 58059054 -66017118 + (TATTG)n Simple_repeat Simple_repeat 1 50 0 1 1027 3650 43 2 7 chr9 58059306 58059755 -66016417 - L1Md_F2 LINE L1 -12 6570 6124 1 1027 239 266 94 21 chr9 58060445 58060541 -66015631 - LTR16A1 LTR ERVL -4 452 350 1 1027 507 33 0 0 chr9 58060548 58060609 -66015563 + (GGA)n Simple_repeat Simple_repeat 2 62 0 1 1027 213 39 0 0 chr9 58062589 58062615 -66013557 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1027 256 242 28 104 chr9 58063107 58063213 -66012959 + MER106B DNA MER1_type 962 1059 0 1 1028 208 300 38 64 chr9 58065130 58065238 -66010934 - MIRb SINE MIR -53 215 107 1 1028 1208 136 14 55 chr9 58066202 58066420 -66009752 + URR1A DNA MER1_type 1 209 -17 1 1028 242 48 0 67 chr9 58068809 58068854 -66007318 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1028 1115 71 0 0 chr9 58069106 58069246 -66006926 + B1_Mus1 SINE Alu 2 141 -7 1 1028 952 221 102 27 chr9 58069961 58070266 -66005906 + MTD LTR MaLR 5 356 -63 1 1028 232 214 155 14 chr9 58071873 58071944 -66004228 + MER5B DNA MER1_type 92 172 -6 1 1028 252 184 0 0 chr9 58072952 58073001 -66003171 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1 1028 1176 49 21 0 chr9 58074863 58075007 -66001165 + B1_Mm SINE Alu 1 147 0 1 1028 212 369 97 8 chr9 58075839 58075973 -66000199 - L3 LINE CR1 -1 4488 4343 1 1028 1732 182 14 61 chr9 58076036 58076191 -65999981 + ORR1D1 LTR MaLR 1 153 -221 1 1028 1453 63 5 21 chr9 58076191 58076385 -65999787 + B2_Mm2 SINE B2 1 191 -4 1 1028 1732 182 14 61 chr9 58076385 58076574 -65999598 + ORR1D1 LTR MaLR 154 329 -45 1 1028 877 150 13 33 chr9 58076629 58076781 -65999391 - B1_Mur4 SINE Alu -1 149 1 1 1028 254 269 108 24 chr9 58078808 58078919 -65997253 + MIRc SINE MIR 59 177 -99 1 1028 276 343 56 67 chr9 58079058 58079088 -65997084 + B2_Mm2 SINE B2 6 35 -160 1 1028 1533 33 5 22 chr9 58079088 58079273 -65996899 + B2_Mm1t SINE B2 2 183 -10 1 1028 189 0 0 0 chr9 58079273 58079294 -65996878 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1028 327 259 66 57 chr9 58079294 58079440 -65996732 + B3 SINE B2 36 216 0 1 1028 277 231 12 37 chr9 58079449 58079530 -65996642 + L1M4 LINE L1 5607 5685 -489 1 1028 241 286 0 28 chr9 58079536 58079608 -65996564 + ID4_ SINE ID 1 70 -13 1 1028 822 258 0 0 chr9 58082853 58083008 -65993164 + RSINE1 SINE B4 11 165 0 1 1028 240 314 79 51 chr9 58083008 58083030 -65993142 + B2_Mm2 SINE B2 10 191 -4 1 1028 198 205 22 43 chr9 58083234 58083280 -65992892 - MIR SINE MIR -105 157 113 1 1028 1370 80 27 0 chr9 58083326 58083513 -65992659 + B2_Mm2 SINE B2 2 193 -2 1 1028 1183 69 7 0 chr9 58083516 58083661 -65992511 + B1_Mus1 SINE Alu 3 148 0 1 1028 222 37 0 0 chr9 58083662 58083689 -65992483 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 1 1028 252 0 0 0 chr9 58083819 58083847 -65992325 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1028 760 104 9 0 chr9 58083860 58083966 -65992206 + B2_Mm2 SINE B2 1 107 -88 1 1028 1002 71 0 0 chr9 58083976 58084102 -65992070 + B2_Mm2 SINE B2 27 152 -43 1 1028 1448 78 5 5 chr9 58084119 58084312 -65991860 - B2_Mm1a SINE B2 0 193 1 1 1028 1540 63 16 0 chr9 58084313 58084504 -65991668 - B2_Mm2 SINE B2 0 195 2 1 1028 366 188 73 57 chr9 58084763 58084887 -65991285 + L1MA8 LINE L1 6158 6283 -8 1 1028 990 245 0 20 chr9 58084998 58085194 -65990978 + B3 SINE B2 1 192 -24 1 1028 207 0 0 0 chr9 58085196 58085219 -65990953 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1 1028 196 248 0 13 chr9 58085390 58085447 -65990725 - MIR SINE MIR -15 261 207 1 1028 336 111 0 0 chr9 58085656 58085710 -65990462 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1028 535 282 176 0 chr9 58085780 58085950 -65990222 + B4A SINE B4 93 292 0 1 1028 699 172 0 0 chr9 58085960 58086123 -65990049 + (CA)n Simple_repeat Simple_repeat 1 163 0 1 1028 378 169 0 0 chr9 58086149 58086238 -65989934 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1028 261 83 0 0 chr9 58086315 58086351 -65989821 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1028 1291 34 0 0 chr9 58086351 58086498 -65989674 - B1_Mus2 SINE Alu 0 147 1 1 1028 297 130 415 9 chr9 58086589 58086695 -65989477 - B2_Mm2 SINE B2 0 195 47 1 1028 1217 102 5 68 chr9 58086761 58086951 -65989221 - B2_Mm1t SINE B2 -14 179 2 1 1028 207 0 0 0 chr9 58087407 58087430 -65988742 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1028 2699 127 24 7 chr9 58087549 58087963 -65988209 - MTC LTR MaLR 0 421 1 1 1028 289 164 206 0 chr9 58088023 58088096 -65988076 + B4A SINE B4 1 88 -204 1 1028 211 199 69 261 chr9 58088096 58088128 -65988044 + B3A SINE B2 1 59 -139 1 1028 278 265 44 0 chr9 58088128 58088196 -65987976 + B4A SINE B4 211 281 -11 1 1028 211 199 69 261 chr9 58088196 58088268 -65987904 + B3A SINE B2 60 198 0 1 1028 341 348 47 5 chr9 58088308 58088519 -65987653 + HAL1b LINE L1 1108 1327 -682 1 1028 516 56 0 0 chr9 58088572 58088644 -65987528 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1028 474 235 83 25 chr9 58088663 58088787 -65987385 - RSINE1 SINE B4 -33 132 1 1 1028 220 184 0 0 chr9 58088861 58088899 -65987273 + CT-rich Low_complexity Low_complexity 1 38 0 1 1028 330 228 24 37 chr9 58088899 58088981 -65987191 - ID4_ SINE ID -2 81 1 1 1028 189 0 0 0 chr9 58089646 58089667 -65986505 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 1 1028 678 156 87 22 chr9 58091676 58091814 -65984358 + B1_Mur3 SINE Alu 3 149 0 1 1028 1297 92 38 11 chr9 58092438 58092624 -65983548 - B2_Mm2 SINE B2 -3 192 2 1 1028 189 107 0 0 chr9 58092807 58092835 -65983337 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1028 349 89 35 18 chr9 58092888 58092945 -65983227 + 4.5SRNA scRNA scRNA 29 86 -8 1 1028 825 47 9 0 chr9 58092895 58093002 -65983170 + B1_Mus2 SINE Alu 40 147 0 1 1028 720 222 0 0 chr9 58093103 58093229 -65982943 - B1_Mur1 SINE Alu -5 144 19 1 1028 27 0 0 0 chr9 58093517 58093544 -65982628 + AT_rich Low_complexity Low_complexity 1 27 0 1 1028 361 279 40 32 chr9 58093813 58093939 -65982233 + L1MB4 LINE L1 5301 5427 -697 1 1028 1045 237 69 25 chr9 58095590 58095953 -65980219 + L1MB4 LINE L1 5589 5967 -213 1 1028 853 43 69 0 chr9 58096010 58096126 -65980046 + B1_Mm SINE Alu 24 147 0 1 1028 258 246 95 170 chr9 58096012 58096159 -65980013 + B4A SINE B4 111 246 -46 2 1028 726 199 28 7 chr9 58096374 58096516 -65979656 + B1_Mur1 SINE Alu 5 149 0 2 1028 402 291 27 41 chr9 58096639 58096786 -65979386 - B1F1 SINE Alu -1 148 4 2 1028 1088 75 7 14 chr9 58097007 58097155 -65979017 - B1_Mus1 SINE Alu 0 148 2 2 1028 1363 87 16 0 chr9 58098762 58098946 -65977226 + B2_Mm2 SINE B2 2 188 -7 2 1028 775 119 0 101 chr9 58098969 58099086 -65977086 + MERVL_2A-int LTR ERVL 5483 5584 -177 2 1028 1517 42 16 5 chr9 58099086 58099279 -65976893 + B2_Mm2 SINE B2 1 195 0 2 1028 775 119 0 101 chr9 58099279 58099320 -65976852 + MERVL_2A-int LTR ERVL 5585 5625 -136 2 1028 331 16 62 31 chr9 58099320 58099385 -65976787 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 1028 1118 90 7 0 chr9 58099388 58099533 -65976639 - B1_Mm SINE Alu 0 147 2 2 1028 401 165 13 0 chr9 58099533 58099612 -65976560 + MERVL_2A-int LTR ERVL 5611 5690 -71 2 1028 248 219 0 52 chr9 58099618 58099695 -65976477 + ORR1A3-int LTR MaLR 567 639 -1324 2 1028 323 47 0 0 chr9 58099700 58099743 -65976429 + MERVL_2A-int LTR ERVL 5719 5761 0 2 1028 320 140 0 0 chr9 58099746 58099796 -65976376 + MT2A LTR ERVL 5 54 -479 2 1028 2217 146 82 5 chr9 58099818 58100198 -65975974 - MTC LTR MaLR -8 413 5 2 1028 204 172 0 0 chr9 58101736 58101794 -65974378 + T-rich Low_complexity Low_complexity 1 58 0 2 1028 1215 61 0 0 chr9 58101794 58101941 -65974231 - B1_Mm SINE Alu 0 147 1 2 1028 216 86 0 0 chr9 58102190 58102225 -65973947 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2 1028 276 195 68 68 chr9 58102976 58103064 -65973108 + MT2B2 LTR ERVL 1 88 -496 2 1028 929 228 107 86 chr9 58102995 58103389 -65972783 + MTD LTR MaLR 18 419 0 2 1028 186 133 0 0 chr9 58105411 58105441 -65970731 + (TTC)n Simple_repeat Simple_repeat 2 31 0 2 1028 200 313 49 65 chr9 58105860 58105983 -65970189 - MIRc SINE MIR -122 146 26 2 1028 1139 67 0 0 chr9 58106074 58106209 -65969963 + B1_Mus1 SINE Alu 2 136 -12 2 1028 1673 31 0 0 chr9 58107249 58107440 -65968732 - B2_Mm1a SINE B2 -2 191 1 2 1028 1123 14 0 21 chr9 58108841 58108984 -65967188 + (TTCCC)n Simple_repeat Simple_repeat 1 140 0 2 1028 1307 66 11 16 chr9 58109015 58109199 -65966973 - B2_Mm1t SINE B2 -1 192 10 2 1028 222 37 0 0 chr9 58111017 58111044 -65965128 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1028 1610 26 0 35 chr9 58111051 58111250 -65964922 - B2_Mm1t SINE B2 0 193 2 2 1028 3410 43 3 0 chr9 58111250 58111641 -65964531 - MTA_Mm LTR MaLR -4 392 1 2 1028 2964 194 40 38 chr9 58111666 58111816 -65964356 - Lx6 LINE L1 -1003 6457 6308 2 1028 1631 161 116 103 chr9 58111816 58111893 -65964279 - ORR1B1 LTR MaLR 0 394 353 2 1028 1231 55 0 0 chr9 58111893 58112038 -65964134 - B1_Mus2 SINE Alu -1 146 2 2 1028 1631 161 116 103 chr9 58112038 58112279 -65963893 - ORR1B1 LTR MaLR -42 352 79 2 1028 426 20 0 0 chr9 58112279 58112330 -65963842 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1028 1631 161 116 103 chr9 58112330 58112399 -65963773 - ORR1B1 LTR MaLR -316 78 1 2 1028 2964 194 40 38 chr9 58112399 58112914 -65963258 - Lx6 LINE L1 -1153 6307 5790 2 1028 637 167 8 24 chr9 58112956 58113079 -65963093 - B1_Mur4 SINE Alu -8 142 22 2 1028 837 155 0 1 chr9 58113084 58113231 -65962941 - Lx6 LINE L1 -352 5810 5658 2 1028 387 73 0 0 chr9 58113997 58114052 -65962120 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1028 344 333 169 39 chr9 58115155 58115245 -65960927 + B4A SINE B4 3 94 -198 2 1028 728 89 152 0 chr9 58115245 58115357 -65960815 + B1_Mus1 SINE Alu 1 129 -19 2 1028 278 26 26 0 chr9 58115361 58115400 -65960772 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 1028 344 333 169 39 chr9 58115400 58115535 -65960637 + B4A SINE B4 95 263 -29 2 1028 191 100 0 48 chr9 58115606 58115620 -65960552 + (GGAA)n Simple_repeat Simple_repeat 3 16 0 2 1028 1482 83 16 0 chr9 58115620 58115812 -65960360 + B2_Mm2 SINE B2 1 195 0 2 1028 191 100 0 48 chr9 58115812 58115824 -65960348 + (GGAA)n Simple_repeat Simple_repeat 1 12 0 2 1028 1576 43 16 0 chr9 58115824 58116011 -65960161 + B2_Mm1a SINE B2 1 190 -3 2 1028 191 100 0 48 chr9 58116011 58116025 -65960147 + (GGAA)n Simple_repeat Simple_repeat 1 13 0 2 1028 1033 82 0 43 chr9 58116025 58116166 -65960006 + B1_Mus1 SINE Alu 2 136 -12 2 1028 798 11 0 0 chr9 58116166 58116257 -65959915 + (GAGAA)n Simple_repeat Simple_repeat 5 95 0 2 1028 836 28 0 44 chr9 58116574 58116688 -65959484 - B2_Mm1t SINE B2 -80 113 5 2 1028 180 0 0 0 chr9 58116688 58116708 -65959464 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 2 1028 920 107 33 0 chr9 58116710 58116860 -65959312 - B2_Mm2 SINE B2 0 195 41 2 1028 1149 74 0 26 chr9 58117108 58117260 -65958912 - B1_Mus1 SINE Alu 0 148 1 2 1028 273 300 28 116 chr9 58117614 58117829 -65958343 - ORSL-2b DNA Tip100 -255 253 58 2 1028 324 350 34 74 chr9 58117864 58118012 -65958160 + B4 SINE B4 63 204 -88 2 1028 661 218 15 8 chr9 58117907 58118041 -65958131 + B1_Mur1 SINE Alu 10 144 -5 2 1028 560 269 34 62 chr9 58118052 58118268 -65957904 + B3A SINE B2 9 198 0 2 1028 873 309 68 81 chr9 58118418 58118655 -65957517 + Lx8 LINE L1 6748 6964 -509 2 1028 1202 48 0 0 chr9 58118655 58118802 -65957370 + B1_Mus1 SINE Alu 2 148 0 2 1028 873 309 68 81 chr9 58118802 58119008 -65957164 + Lx8 LINE L1 6965 7185 -288 2 1028 492 72 0 0 chr9 58119059 58119128 -65957044 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1028 1175 75 0 0 chr9 58119320 58119466 -65956706 - B1_Mus2 SINE Alu 0 147 2 2 1028 1180 48 0 20 chr9 58119665 58119815 -65956357 + B1_Mus2 SINE Alu 1 147 0 2 1028 1101 68 14 7 chr9 58120027 58120174 -65955998 + B1_Mus1 SINE Alu 1 148 0 2 1028 706 299 76 8 chr9 58120177 58120440 -65955732 + MER89 LTR ERV1 33 313 -246 2 1028 693 261 25 0 chr9 58120656 58120813 -65955359 - RSINE1 SINE B4 -3 162 2 2 1028 231 371 68 114 chr9 58121025 58121180 -65954992 + MER21B LTR ERV1 18 175 -688 2 1028 248 0 31 0 chr9 58121180 58121212 -65954960 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1028 986 83 23 0 chr9 58121212 58121345 -65954827 - B1_Mus2 SINE Alu -11 136 1 2 1028 231 371 68 114 chr9 58121345 58121556 -65954616 + MER21B LTR ERV1 176 367 -496 2 1028 1654 170 132 35 chr9 58121573 58121945 -65954227 + MTC LTR MaLR 1 408 -13 2 1028 265 288 156 23 chr9 58121982 58122110 -65954062 + MER21B LTR ERV1 416 560 -303 2 1028 1172 55 14 0 chr9 58122186 58122332 -65953840 + B1_Mus1 SINE Alu 1 148 0 2 1028 644 294 81 39 chr9 58122500 58122940 -65953232 - L1MD2 LINE L1 -138 6041 5584 2 1028 253 269 115 0 chr9 58123320 58123424 -65952748 + L1MD3 LINE L1 130 245 -6178 2 1028 1290 34 0 0 chr9 58123968 58124114 -65952058 + B1_Mm SINE Alu 2 147 0 2 1028 929 278 39 18 chr9 58124408 58124796 -65951376 + L1MD3 LINE L1 3404 3799 -3142 2 1028 730 239 12 12 chr9 58124828 58124997 -65951175 + B3 SINE B2 48 216 0 2 1028 303 287 40 81 chr9 58125090 58125144 -65951028 + MT2B LTR ERVL 99 152 -449 2 1028 1105 85 25 206 chr9 58125144 58125273 -65950899 + B2_Mm2 SINE B2 1 90 -105 2 1028 252 77 0 0 chr9 58125273 58125312 -65950860 + (CAA)n Simple_repeat Simple_repeat 1 39 0 2 1028 1105 85 25 206 chr9 58125312 58125420 -65950752 + B2_Mm2 SINE B2 91 195 0 2 1028 303 287 40 81 chr9 58125420 58125513 -65950659 + MT2B LTR ERVL 153 239 -362 2 1028 575 253 26 46 chr9 58125427 58125545 -65950627 + B1_Mur4 SINE Alu 1 118 -32 2 1028 324 0 0 0 chr9 58125545 58125581 -65950591 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1028 575 253 26 46 chr9 58125581 58125615 -65950557 + B1_Mur4 SINE Alu 119 150 0 2 1028 317 263 132 0 chr9 58125650 58125764 -65950408 + L1MD3 LINE L1 6057 6185 -789 2 1028 1209 48 7 0 chr9 58125764 58125909 -65950263 + B1_Mus2 SINE Alu 2 147 0 2 1028 290 67 0 22 chr9 58125909 58125955 -65950217 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2 1028 1229 61 0 0 chr9 58126097 58126244 -65949928 - B1_Mus1 SINE Alu 0 148 2 2 1028 286 373 25 19 chr9 58126247 58126408 -65949764 + L1MD3 LINE L1 6373 6534 -425 2 1028 3005 182 38 38 chr9 58126724 58126846 -65949326 + RLTR25B LTR ERVK 19 236 -792 2 1028 511 92 34 11 chr9 58126846 58126934 -65949238 + L1Md_F2 LINE L1 6491 6580 -2 2 1028 3005 191 86 84 chr9 58126934 58127726 -65948446 + RLTR25B LTR ERVK 237 1028 0 2 1028 710 268 34 14 chr9 58127750 58127958 -65948214 + ID_B1 SINE B4 12 223 -1 2 1028 300 259 82 47 chr9 58127960 58128130 -65948042 + L1MA7 LINE L1 6116 6291 0 2 1028 264 318 31 0 chr9 58128130 58128259 -65947913 + L1MD3 LINE L1 6646 6778 -2012 2 1028 1504 165 70 58 chr9 58128312 58128654 -65947518 - RLTR30 LTR ERV1 -33 346 1 2 1028 527 262 112 0 chr9 58128683 58128843 -65947329 - B3 SINE B2 -24 192 15 2 1028 208 197 15 29 chr9 58128919 58128987 -65947185 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 1028 1715 31 0 0 chr9 58128987 58129179 -65946993 - B2_Mm1a SINE B2 0 193 2 2 1028 1191 49 14 0 chr9 58129182 58129326 -65946846 - B1_Mm SINE Alu -1 146 1 2 1028 1500 52 0 0 chr9 58129740 58129914 -65946258 + B2_Mm1a SINE B2 4 177 -16 2 1028 1005 147 5 6 chr9 58129927 58130113 -65946059 - MTD LTR MaLR -14 405 233 2 1028 405 91 0 5 chr9 58130136 58130201 -65945971 - B2_Mm2 SINE B2 -107 109 47 2 1028 930 53 80 0 chr9 58130228 58130374 -65945798 - B2_Mm1t SINE B2 -14 179 3 2 1028 771 185 43 134 chr9 58130375 58130606 -65945566 - MTD LTR MaLR -209 210 1 2 1028 432 291 29 15 chr9 58130729 58130865 -65945307 + B1F SINE Alu 1 138 -11 2 1028 228 239 179 0 chr9 58130888 58130955 -65945217 + ID4 SINE ID 2 80 -3 2 1028 553 229 22 22 chr9 58130988 58131122 -65945050 + B1F SINE Alu 16 149 0 2 1028 1070 51 0 7 chr9 58131792 58131930 -65944242 + B1_Mus1 SINE Alu 2 138 -10 2 1028 465 19 0 0 chr9 58132040 58132094 -65944078 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1028 1496 73 16 0 chr9 58133285 58133477 -65942695 - B2_Mm2 SINE B2 0 195 1 2 1028 234 150 0 0 chr9 58133757 58133797 -65942375 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1028 1239 28 7 0 chr9 58133797 58133942 -65942230 - B1_Mus2 SINE Alu 0 147 2 2 1028 212 130 22 0 chr9 58135383 58135429 -65940743 + (TGG)n Simple_repeat Simple_repeat 2 48 0 2 1028 238 276 177 8 chr9 58135526 58135650 -65940522 - MIRc SINE MIR -80 188 44 2 1028 236 200 0 15 chr9 58136025 58136091 -65940081 + (TGG)n Simple_repeat Simple_repeat 1 65 0 2 1028 211 292 108 27 chr9 58139202 58139276 -65936896 + ID SINE ID 1 80 -144 2 1028 785 235 39 0 chr9 58139318 58139497 -65936675 + B3 SINE B2 29 214 -2 2 1028 22 0 0 0 chr9 58139501 58139523 -65936649 + AT_rich Low_complexity Low_complexity 1 22 0 3 1028 549 28 0 0 chr9 58139743 58139814 -65936358 - B1_Mus2 SINE Alu -1 146 76 3 1028 254 95 0 23 chr9 58140835 58140878 -65935294 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 3 1028 1257 48 0 0 chr9 58140878 58141025 -65935147 - B1_Mus2 SINE Alu 0 147 1 3 1028 1008 151 0 0 chr9 58141029 58141175 -65934997 - B1_Mus1 SINE Alu 0 148 3 3 1028 1663 42 0 0 chr9 58141791 58141983 -65934189 - B2_Mm1a SINE B2 -1 192 1 3 1028 747 348 33 4 chr9 58142678 58142952 -65933220 + B4 SINE B4 9 290 -2 3 1028 411 21 0 0 chr9 58143542 58143590 -65932582 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1028 242 358 12 0 chr9 58143881 58143962 -65932210 + MIR SINE MIR 46 127 -81 3 1028 329 338 82 7 chr9 58144528 58144674 -65931498 - Charlie10b DNA MER1_type -64 178 22 3 1028 23 0 0 0 chr9 58144791 58144814 -65931358 + AT_rich Low_complexity Low_complexity 1 23 0 3 1028 1039 58 7 0 chr9 58146340 58146478 -65929694 + B1_Mm SINE Alu 9 147 0 3 1028 315 0 0 0 chr9 58146481 58146516 -65929656 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1028 278 206 15 0 chr9 58146927 58146995 -65929177 + CT-rich Low_complexity Low_complexity 3 71 0 3 1028 480 206 0 0 chr9 58147020 58147151 -65929021 + (CA)n Simple_repeat Simple_repeat 1 131 0 3 1028 1152 186 0 61 chr9 58148312 58148351 -65927821 + B3 SINE B2 2 40 -176 3 1028 1624 26 16 16 chr9 58148351 58148543 -65927629 - B2_Mm1t SINE B2 -1 192 1 3 1028 1152 186 0 61 chr9 58148543 58148732 -65927440 + B3 SINE B2 41 216 0 3 1028 307 291 54 16 chr9 58148747 58148876 -65927296 - L1ME2 LINE L1 -1 6163 6030 3 1028 1204 55 0 0 chr9 58148979 58149125 -65927047 - B1_Mus2 SINE Alu 0 147 2 3 1028 1414 45 79 0 chr9 58149685 58149863 -65926309 - B2_Mm1t SINE B2 0 193 2 3 1028 633 148 2 1 chr9 58149892 58150005 -65926167 + B1_Mm SINE Alu 2 115 -5 3 1028 574 191 19 0 chr9 58150098 58150203 -65925969 + B3 SINE B2 1 107 -109 3 1028 351 287 8 31 chr9 58150362 58150485 -65925687 + B3 SINE B2 83 215 -1 3 1028 181 183 45 104 chr9 58151451 58151518 -65924654 + MIRm SINE MIR 119 181 -95 3 1028 194 281 169 0 chr9 58151615 58151704 -65924468 - L3b LINE CR1 -159 323 220 3 1028 305 330 66 26 chr9 58152736 58152963 -65923209 + L2a LINE L2 3030 3265 -161 3 1028 377 301 111 15 chr9 58154233 58154447 -65921725 + MIRc SINE MIR 8 235 -33 3 1028 229 209 0 0 chr9 58154900 58154943 -65921229 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 3 1028 1048 82 20 20 chr9 58156925 58157075 -65919097 - B1_Mur4 SINE Alu 0 150 1 3 1028 813 269 150 12 chr9 58158439 58158778 -65917394 + MER96B DNA hAT 1 386 -31 3 1028 1293 27 0 0 chr9 58158919 58159066 -65917106 - B1_Mm SINE Alu 0 147 1 3 1028 363 78 0 0 chr9 58159854 58159905 -65916267 + (CTGGGG)n Simple_repeat Simple_repeat 6 56 0 3 1028 1120 52 15 0 chr9 58162294 58162428 -65913744 - B1_Mm SINE Alu -11 136 1 3 1028 367 317 16 48 chr9 58163409 58163535 -65912637 - B4 SINE B4 -37 255 134 3 1028 800 274 73 28 chr9 58164025 58164298 -65911874 + B4 SINE B4 1 288 -4 3 1028 483 202 0 0 chr9 58165485 58165589 -65910583 + CT-rich Low_complexity Low_complexity 1 104 0 3 1028 285 283 17 0 chr9 58166013 58166073 -65910099 - RSINE1 SINE B4 -100 65 5 3 1028 265 143 0 39 chr9 58166064 58166115 -65910057 - B4A SINE B4 -51 241 193 3 1028 324 70 0 0 chr9 58166481 58166524 -65909648 + (CATA)n Simple_repeat Simple_repeat 1 43 0 3 1028 478 335 31 56 chr9 58166760 58166956 -65909216 - B4A SINE B4 -79 213 23 3 1028 212 226 208 0 chr9 58166957 58167010 -65909162 - B4A SINE B4 -227 65 2 3 1028 272 257 40 0 chr9 58167161 58167262 -65908910 + (TG)n Simple_repeat Simple_repeat 1 105 0 3 1028 968 173 58 16 chr9 58167268 58167456 -65908716 - B3 SINE B2 -16 200 5 3 1028 670 294 121 74 chr9 58167741 58168064 -65908108 + MLT1F2 LTR MaLR 100 437 -123 3 1028 392 123 270 95 chr9 58168101 58168227 -65907945 - B2_Mm2 SINE B2 -1 194 47 3 1028 1284 102 11 0 chr9 58168312 58168488 -65907684 - B2_Mm1t SINE B2 -14 179 2 3 1028 540 320 58 10 chr9 58168742 58168947 -65907225 - MER21B LTR ERV1 -99 764 550 3 1028 950 268 111 33 chr9 58168948 58169280 -65906892 - MER21B LTR ERV1 -488 375 18 3 1028 229 323 0 16 chr9 58169467 58169530 -65906642 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1028 1031 196 11 5 chr9 58169596 58169781 -65906391 - B3 SINE B2 -2 214 29 3 1028 1225 48 0 13 chr9 58169812 58169961 -65906211 - B1_Mm SINE Alu 0 147 1 3 1028 443 18 18 0 chr9 58169995 58170051 -65906121 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 3 1028 478 188 35 0 chr9 58170052 58170137 -65906035 - B1_Mur2 SINE Alu -13 136 49 3 1028 610 277 49 68 chr9 58170116 58170157 -65906015 - B4A SINE B4 -89 203 167 3 1028 1961 135 8 77 chr9 58170157 58170224 -65905948 - ORR1A4 LTR MaLR 0 329 270 3 1028 1025 173 39 11 chr9 58170224 58170405 -65905767 + B2_Mm2 SINE B2 2 187 -8 3 1028 1961 135 8 77 chr9 58170405 58170690 -65905482 - ORR1A4 LTR MaLR -60 269 2 3 1028 610 277 49 68 chr9 58170690 58170853 -65905319 - B4A SINE B4 -126 166 3 3 1028 268 402 62 22 chr9 58171261 58171485 -65904687 - LTR33A LTR ERVL -29 491 259 3 1028 225 211 105 0 chr9 58171592 58171649 -65904523 - LTR33A LTR ERVL -425 90 28 3 1028 1462 78 5 0 chr9 58171712 58171904 -65904268 - B2_Mm1a SINE B2 0 193 1 3 1028 764 200 0 29 chr9 58172384 58172523 -65903649 + B1_Mur1 SINE Alu 1 135 -14 3 1028 536 237 79 0 chr9 58172663 58172777 -65903395 - B1_Mur1 SINE Alu -6 143 21 3 1028 1604 31 5 5 chr9 58173657 58173849 -65902323 - B2_Mm1a SINE B2 -1 192 1 3 1028 1168 82 0 0 chr9 58173852 58173998 -65902174 - B1_Mm SINE Alu 0 147 2 3 1028 687 239 15 0 chr9 58174166 58174296 -65901876 - RSINE1 SINE B4 -31 134 3 3 1028 237 224 20 0 chr9 58174455 58174504 -65901668 + C-rich Low_complexity Low_complexity 5 54 0 3 1028 659 213 103 0 chr9 58174684 58174820 -65901352 + B3A SINE B2 1 150 -48 3 1028 369 62 0 0 chr9 58174824 58174872 -65901300 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1028 1196 97 74 6 chr9 58174945 58175121 -65901051 - B2_Mm2 SINE B2 -3 192 5 3 1028 381 22 0 0 chr9 58175770 58175816 -65900356 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1028 818 226 109 16 chr9 58175894 58176087 -65900085 + B3 SINE B2 6 216 0 3 1028 477 0 0 0 chr9 58176295 58176348 -65899824 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1028 301 175 17 17 chr9 58176916 58176974 -65899198 + ORR1C1 LTR MaLR 112 169 -198 3 1028 1069 168 95 3 chr9 58176986 58177204 -65898968 + ORR1C1 LTR MaLR 148 378 0 3 1028 486 342 84 15 chr9 58178978 58179180 -65896992 - MIRb SINE MIR -49 219 4 3 1028 556 195 0 12 chr9 58179360 58179511 -65896661 + GA-rich Low_complexity Low_complexity 2 151 0 3 1028 297 128 0 0 chr9 58179511 58179558 -65896614 + (CAGG)n Simple_repeat Simple_repeat 2 48 0 3 1028 556 195 0 12 chr9 58179558 58179577 -65896595 + polypurine Low_complexity Low_complexity 152 170 0 3 1028 231 125 0 0 chr9 58180205 58180245 -65895927 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1028 3590 25 0 0 chr9 58180250 58180655 -65895517 - L1Md_T LINE L1 -11 6571 6167 3 1028 278 192 19 0 chr9 58181035 58181087 -65895085 - RLTR40 LTR ERVK -5 812 760 3 1028 1525 165 144 38 chr9 58181088 58181239 -65894933 + ORR1C2 LTR MaLR 1 173 -211 3 1028 371 96 27 0 chr9 58181239 58181312 -65894860 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 3 1028 1525 165 144 38 chr9 58181312 58181500 -65894672 + ORR1C2 LTR MaLR 174 375 -9 3 1028 3334 151 80 92 chr9 58181500 58181856 -65894316 - RLTR40 LTR ERVK -54 763 406 3 1028 180 0 0 0 chr9 58181856 58181876 -65894296 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 3 1028 3334 151 80 92 chr9 58181876 58182042 -65894130 - RLTR40 LTR ERVK -412 405 245 3 1028 1295 113 11 5 chr9 58182042 58182229 -65893943 + B2_Mm1t SINE B2 2 189 -4 3 1028 3334 151 80 92 chr9 58182229 58182323 -65893849 - RLTR40 LTR ERVK -573 244 174 3 1028 1209 68 0 0 chr9 58182323 58182470 -65893702 - B1_Mus2 SINE Alu 0 147 1 3 1028 3334 151 80 92 chr9 58182470 58182544 -65893628 - RLTR40 LTR ERVK -644 173 90 3 1028 3657 157 21 19 chr9 58182544 58183169 -65893003 - Lx4B LINE L1 0 7058 6433 3 1028 3334 151 80 92 chr9 58183169 58183247 -65892925 - RLTR40 LTR ERVK -728 89 3 3 1028 32 57 0 0 chr9 58183715 58183768 -65892404 + AT_rich Low_complexity Low_complexity 1 53 0 3 1028 294 29 0 0 chr9 58186664 58186699 -65889473 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1028 977 39 8 0 chr9 58186699 58186828 -65889344 + (CA)n Simple_repeat Simple_repeat 1 131 0 3 1028 626 276 55 0 chr9 58187268 58187413 -65888759 + RSINE1 SINE B4 3 155 -10 3 1028 229 94 0 54 chr9 58189550 58189606 -65886566 + (TTTTTG)n Simple_repeat Simple_repeat 1 53 0 3 1028 1363 76 11 21 chr9 58189735 58189923 -65886249 - B2_Mm2 SINE B2 -9 186 1 3 1028 1394 64 21 36 chr9 58190646 58190840 -65885332 + B2_Mm2 SINE B2 1 191 -4 3 1028 861 175 37 24 chr9 58190863 58191027 -65885145 + B3 SINE B2 49 214 -2 3 1028 189 0 0 0 chr9 58192169 58192190 -65883982 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1028 432 0 0 0 chr9 58192216 58192264 -65883908 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1028 445 364 7 27 chr9 58193441 58193588 -65882584 - MER63A DNA AcHobo -62 148 5 3 1028 623 309 95 24 chr9 58193730 58194077 -65882095 - LTR16C LTR ERVL -41 497 94 3 1028 455 310 100 57 chr9 58195023 58195252 -65880920 + MLT1D LTR MaLR 89 327 -178 3 1028 413 252 107 0 chr9 58195255 58195358 -65880814 + B4A SINE B4 1 114 -178 3 1029 547 105 64 16 chr9 58196099 58196350 -65879822 + (TG)n Simple_repeat Simple_repeat 1 262 0 3 1029 638 83 71 6 chr9 58196405 58196574 -65879598 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1029 642 206 175 11 chr9 58196753 58196930 -65879242 - RLTR17 LTR ERVK 0 692 487 3 1029 229 231 30 15 chr9 58196933 58196999 -65879173 - RLTR31_Mm LTR ERVK -146 415 349 3 1029 2396 151 35 125 chr9 58196994 58197592 -65878580 - RLTR31_Mm LTR ERVK -17 544 1 3 1029 2786 98 42 0 chr9 58197601 58197979 -65878193 - ORR1B1 LTR MaLR 0 394 1 3 1029 285 252 58 0 chr9 58198349 58198452 -65877720 + Charlie5 DNA MER1_type 2403 2511 -113 4 1029 396 255 97 10 chr9 58198475 58198578 -65877594 - PB1D10 SINE Alu -5 112 1 4 1029 30 27 0 0 chr9 58198586 58198623 -65877549 + AT_rich Low_complexity Low_complexity 1 37 0 4 1029 336 48 0 0 chr9 58198961 58199003 -65877169 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1029 664 266 74 5 chr9 58199486 58199701 -65876471 + Ricksha_c DNA MuDR 582 811 -1237 4 1029 416 304 115 37 chr9 58199790 58199981 -65876191 - RLTR14 LTR ERV1 0 382 177 4 1029 325 321 55 0 chr9 58200319 58200428 -65875744 - Tigger5 DNA MER2_type 0 2406 2292 4 1029 368 298 0 9 chr9 58200495 58200600 -65875572 + PB1D10 SINE Alu 1 104 -13 4 1029 306 0 0 0 chr9 58200604 58200638 -65875534 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1029 1399 65 38 0 chr9 58200639 58200823 -65875349 + B2_Mm2 SINE B2 4 194 -1 4 1029 230 250 107 0 chr9 58200860 58200916 -65875256 + tRNA-Ala-GCY_ tRNA tRNA 8 69 -6 4 1029 351 302 0 87 chr9 58200912 58201039 -65875133 - Tigger5 DNA MER2_type -2285 121 6 4 1029 229 312 61 30 chr9 58200916 58200949 -65875223 + BC1_Mm scRNA scRNA 25 105 -47 4 1029 891 219 182 98 chr9 58201613 58201948 -65874224 + RMER15 LTR ERVL 1 363 -212 4 1029 3321 155 44 176 chr9 58201948 58202992 -65873180 + RMER1B Other Other 161 1066 0 4 1029 283 322 46 53 chr9 58204017 58204168 -65872004 + MLT1A1 LTR MaLR 1 150 -258 4 1029 923 259 32 0 chr9 58204169 58204385 -65871787 + ID_B1 SINE B4 1 223 -1 4 1029 2250 165 156 26 chr9 58204489 58204956 -65871216 - RLTR24 LTR ERV1 0 529 2 4 1029 435 19 0 0 chr9 58205681 58205733 -65870439 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1029 599 276 37 0 chr9 58205749 58205883 -65870289 - RSINE1 SINE B4 -22 143 5 4 1029 879 219 10 53 chr9 58205912 58206102 -65870070 + B3A SINE B2 1 184 -14 4 1029 473 0 18 0 chr9 58206102 58206159 -65870013 + (CATA)n Simple_repeat Simple_repeat 3 60 0 4 1029 879 219 10 53 chr9 58206159 58206175 -65869997 + B3A SINE B2 185 198 0 4 1029 246 95 0 0 chr9 58206222 58206264 -65869908 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1029 279 0 0 0 chr9 58206794 58206825 -65869347 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1029 840 169 11 6 chr9 58208001 58208180 -65867992 + GA-rich Low_complexity Low_complexity 1 180 0 4 1029 410 36 18 0 chr9 58208339 58208395 -65867777 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1029 336 111 0 0 chr9 58210394 58210457 -65865715 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 4 1029 501 194 0 32 chr9 58211384 58211570 -65864602 + CT-rich Low_complexity Low_complexity 1 180 0 4 1029 294 264 54 40 chr9 58211908 58212031 -65864141 + MIRb SINE MIR 55 185 -77 4 1029 227 314 114 0 chr9 58212069 58212174 -65863998 + MLT1C LTR MaLR 10 126 -264 4 1029 315 0 0 0 chr9 58212215 58212250 -65863922 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1029 264 284 94 75 chr9 58212250 58212463 -65863709 + MLT1C LTR MaLR 235 451 -16 4 1029 180 298 19 105 chr9 58212894 58212999 -65863173 - MIRb SINE MIR -60 208 113 4 1029 396 0 0 0 chr9 58213169 58213213 -65862959 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1029 499 248 83 25 chr9 58213223 58213343 -65862829 - RSINE1 SINE B4 -36 129 3 4 1029 1960 214 44 8 chr9 58213485 58213871 -65862301 + MTD LTR MaLR 13 412 -7 4 1029 348 322 89 89 chr9 58214858 58215117 -65861055 + L1ME4a LINE L1 5639 5897 -227 4 1029 516 256 58 29 chr9 58215326 58215463 -65860709 + B1F2 SINE Alu 2 142 -7 4 1029 1179 192 14 0 chr9 58215538 58215751 -65860421 + B3 SINE B2 1 216 0 4 1029 851 242 116 0 chr9 58215766 58215964 -65860208 + ID_B1 SINE B4 1 221 -3 4 1029 287 49 0 24 chr9 58216669 58216711 -65859461 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1029 901 323 14 21 chr9 58216718 58217003 -65859169 - B4A SINE B4 -8 284 2 4 1029 187 363 47 38 chr9 58217220 58217326 -65858846 + MIR SINE MIR 125 231 -31 4 1029 595 226 0 17 chr9 58217947 58218064 -65858108 + PB1D10 SINE Alu 2 116 -1 4 1029 828 231 130 32 chr9 58218606 58218642 -65857530 - B4 SINE B4 -21 271 238 4 1029 189 0 0 0 chr9 58218642 58218663 -65857509 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1029 920 199 141 15 chr9 58218663 58218872 -65857300 - B4A SINE B4 -55 237 2 4 1029 915 158 7 7 chr9 58218974 58219121 -65857051 + B1_Mur2 SINE Alu 2 148 -1 4 1029 351 121 0 0 chr9 58220265 58220323 -65855849 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1029 2552 70 123 3 chr9 58220336 58220693 -65855479 + MTB LTR MaLR 1 400 0 4 1029 616 291 38 48 chr9 58220746 58220955 -65855217 - B4A SINE B4 -85 207 1 4 1029 273 145 0 0 chr9 58221080 58221142 -65855030 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1029 523 267 64 17 chr9 58221378 58221524 -65854648 - B4 SINE B4 -74 218 66 4 1029 189 283 0 36 chr9 58221532 58221587 -65854585 + MIRb SINE MIR 16 68 -200 4 1029 519 17 0 0 chr9 58222478 58222538 -65853634 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1029 192 338 122 0 chr9 58223012 58223086 -65853086 + L2 LINE L2 686 768 -2651 4 1029 180 0 0 0 chr9 58223768 58223788 -65852384 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1029 806 146 0 22 chr9 58224653 58225311 -65850861 + (CA)n Simple_repeat Simple_repeat 1 643 0 4 1029 452 212 30 10 chr9 58226485 58226585 -65849587 - MIR SINE MIR -77 131 30 4 1029 186 71 0 0 chr9 58226819 58226847 -65849325 + (CAGGG)n Simple_repeat Simple_repeat 4 31 0 4 1029 223 245 19 0 chr9 58227233 58227286 -65848886 - MIR SINE MIR -133 129 76 4 1029 378 0 0 0 chr9 58227307 58227349 -65848823 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1029 462 36 0 0 chr9 58227349 58227404 -65848768 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1029 183 139 0 0 chr9 58227468 58227504 -65848668 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1029 1003 256 85 15 chr9 58227567 58227837 -65848335 - B4 SINE B4 -2 290 2 4 1029 862 194 0 14 chr9 58228055 58228201 -65847971 - B1_Mur1 SINE Alu -5 144 1 4 1029 584 238 76 23 chr9 58228233 58228405 -65847767 - B3A SINE B2 -17 181 1 4 1029 257 191 147 116 chr9 58228626 58228721 -65847451 - Lx8 LINE L1 -331 7142 7045 4 1029 391 370 30 35 chr9 58229077 58229276 -65846896 + MER44D DNA MER2_type 4 201 -504 4 1029 468 217 15 91 chr9 58229284 58229416 -65846756 + MER44D DNA MER2_type 456 576 -129 4 1029 924 220 166 71 chr9 58229540 58229932 -65846240 + Lx8 LINE L1 7045 7473 0 4 1029 756 318 126 31 chr9 58230033 58230543 -65845629 - L1MEf LINE L1 -3317 3227 2670 4 1029 493 258 68 6 chr9 58230567 58230700 -65845472 - ID_B1 SINE B4 -77 215 81 4 1029 240 259 111 95 chr9 58230702 58230742 -65845430 - L1MEf LINE L1 -3950 2675 2650 4 1029 944 128 50 0 chr9 58230742 58230883 -65845289 - B1_Mur2 SINE Alu -1 148 1 4 1029 383 226 148 42 chr9 58230883 58231119 -65845053 - L1MEf LINE L1 -3993 2647 2387 4 1029 429 246 18 178 chr9 58231120 58231283 -65844889 - ID_B1 SINE B4 -2 222 86 4 1029 396 0 0 0 chr9 58231341 58231385 -65844787 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1029 470 263 7 89 chr9 58231401 58231514 -65844658 - RSINE1 SINE B4 -20 145 41 4 1029 704 85 240 33 chr9 58231514 58231635 -65844537 - B1_Mm SINE Alu 0 147 2 4 1029 470 263 7 89 chr9 58231635 58231667 -65844505 - RSINE1 SINE B4 -125 40 12 4 1029 1185 86 19 0 chr9 58231666 58231828 -65844344 + B2_Mm2 SINE B2 25 189 -6 4 1029 308 278 23 83 chr9 58231828 58232044 -65844128 - L1MEf LINE L1 -4306 2334 2132 4 1029 259 303 148 22 chr9 58232184 58232319 -65843853 - ORR1E LTR MaLR -157 202 51 4 1029 1156 267 93 15 chr9 58232375 58232850 -65843322 - L1MEf LINE L1 -4544 2096 1585 4 1029 231 289 88 0 chr9 58232893 58233007 -65843165 - L1MEf LINE L1 -5153 1487 1364 4 1029 799 217 53 48 chr9 58233009 58233198 -65842974 - B3A SINE B2 -2 196 7 4 1029 725 168 0 13 chr9 58233238 58233389 -65842783 + (CATA)n Simple_repeat Simple_repeat 3 151 0 4 1029 347 276 11 0 chr9 58233392 58233479 -65842693 - L1MEf LINE L1 -5419 1221 1134 4 1029 313 273 81 0 chr9 58233588 58233687 -65842485 - L1MEf LINE L1 -5798 842 736 4 1029 1926 198 28 0 chr9 58233799 58234163 -65842009 - ORR1D1 LTR MaLR 0 374 1 4 1029 4741 96 39 20 chr9 58234265 58234834 -65841338 + RMER6A LTR ERVK 2 576 -180 4 1029 357 24 0 0 chr9 58234834 58234876 -65841296 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 4 1029 4741 96 39 20 chr9 58234876 58235047 -65841125 + RMER6A LTR ERVK 577 755 -1 4 1029 194 62 31 0 chr9 58235242 58235274 -65840898 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1029 313 285 7 65 chr9 58235345 58235484 -65840688 - L1MEf LINE L1 -6390 157 27 4 1029 906 256 9 62 chr9 58236202 58236427 -65839745 - ID_B1 SINE B4 0 224 12 4 1029 186 250 207 35 chr9 58236976 58237063 -65839109 + MIR SINE MIR 33 134 -74 4 1029 943 101 11 49 chr9 58238810 58239076 -65837096 + (TG)n Simple_repeat Simple_repeat 1 255 0 4 1029 238 248 86 0 chr9 58239378 58239477 -65836695 - MIR SINE MIR -84 184 74 4 1029 331 274 62 44 chr9 58240728 58240916 -65835256 - MLT1H2 LTR MaLR -294 195 38 4 1029 276 91 0 0 chr9 58241089 58241133 -65835039 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1029 413 165 38 0 chr9 58242064 58242143 -65834029 + ID4 SINE ID 1 82 -1 4 1029 891 284 167 26 chr9 58242836 58243298 -65832874 + MER73 LTR ERVL 90 616 -28 4 1029 873 240 58 44 chr9 58243282 58243487 -65832685 + ID_B1 SINE B4 15 222 -2 4 1029 491 0 17 0 chr9 58244218 58244277 -65831895 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1029 444 246 136 0 chr9 58244377 58244495 -65831677 - B1_Mur1 SINE Alu 0 149 16 4 1029 411 270 38 45 chr9 58244521 58244653 -65831519 - B4 SINE B4 -161 131 1 4 1029 664 181 8 0 chr9 58244783 58244916 -65831256 - RMER1B Other Other -13 1053 920 4 1029 2404 121 14 39 chr9 58244902 58245333 -65830839 + Lx5 LINE L1 5693 6112 -938 4 1029 584 204 105 8 chr9 58245344 58245477 -65830695 + B3 SINE B2 69 214 -2 4 1029 285 304 47 16 chr9 58245830 58245957 -65830215 + B1F SINE Alu 1 131 -18 4 1029 41 36 0 0 chr9 58245971 58246026 -65830146 + AT_rich Low_complexity Low_complexity 1 55 0 4 1029 295 371 50 84 chr9 58246068 58246330 -65829842 - MIRb SINE MIR 0 268 16 4 1029 706 358 28 0 chr9 58246610 58246895 -65829277 - LTR16A LTR ERVL -126 325 33 5 1029 884 248 55 121 chr9 58247906 58247942 -65828230 - B4 SINE B4 -22 270 248 5 1029 447 19 0 0 chr9 58247942 58247994 -65828178 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1029 884 248 55 121 chr9 58247994 58248246 -65827926 - B4 SINE B4 -45 247 1 5 1029 320 252 49 25 chr9 58248294 58248416 -65827756 - Lx8 LINE L1 0 7473 7349 5 1029 1997 186 89 0 chr9 58249527 58249898 -65826274 + MTD LTR MaLR 16 419 0 5 1029 648 247 77 10 chr9 58250195 58250391 -65825781 - Tigger7 DNA MER2_type -12 2479 2271 5 1029 394 312 25 84 chr9 58250454 58250657 -65825515 - MLT1D LTR MaLR -297 208 18 5 1029 198 292 208 0 chr9 58250736 58250842 -65825330 + MIR3 SINE MIR 45 172 -36 5 1029 229 330 108 17 chr9 58250904 58251024 -65825148 - MLT1J LTR MaLR -377 135 5 5 1029 416 286 133 16 chr9 58251150 58251278 -65824894 + ID_B1 SINE B4 79 221 -3 5 1029 514 341 77 17 chr9 58251953 58252186 -65823986 + L4 LINE RTE 1592 1838 -191 5 1029 301 338 61 37 chr9 58253141 58253304 -65822868 + HAL1-3A_ME LINE L1 2264 2430 -428 5 1029 593 304 51 37 chr9 58253908 58254181 -65821991 - MLT1B LTR MaLR -52 338 62 5 1029 520 290 42 28 chr9 58254312 58254552 -65821620 + L1MA4 LINE L1 5697 5930 -370 5 1029 541 261 93 97 chr9 58255217 58255506 -65820666 + ORR1E LTR MaLR 71 358 -1 5 1029 664 147 15 0 chr9 58256449 58256585 -65819587 + (TG)n Simple_repeat Simple_repeat 1 138 0 5 1029 1414 228 7 40 chr9 58256585 58256887 -65819285 - B4A SINE B4 0 292 1 5 1029 265 257 0 39 chr9 58257849 58257926 -65818246 - L3b LINE CR1 -167 315 242 5 1029 242 312 139 75 chr9 58259820 58259993 -65816179 + LTR33B LTR ERVL 25 208 -295 5 1029 184 77 51 0 chr9 58260162 58260201 -65815971 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1029 712 296 84 74 chr9 58260208 58260493 -65815679 - B4A SINE B4 0 292 5 5 1029 239 200 0 68 chr9 58260523 58260582 -65815590 + LTR33B LTR ERVL 429 483 -20 5 1029 288 296 99 30 chr9 58260604 58260705 -65815467 - MLT1J LTR MaLR -340 172 65 5 1029 484 257 55 98 chr9 58261113 58261277 -65814895 - RMER30 DNA MER1_type -5 197 41 5 1029 460 286 36 50 chr9 58261284 58261412 -65814760 + RSINE1 SINE B4 11 137 -28 5 1029 477 50 0 0 chr9 58261412 58261472 -65814700 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1029 460 286 36 50 chr9 58261472 58261483 -65814689 + RSINE1 SINE B4 138 148 -17 5 1029 328 319 50 29 chr9 58263058 58263197 -65812975 + MER5A DNA MER1_type 1 142 -47 5 1029 484 239 43 0 chr9 58263449 58263566 -65812606 + B4A SINE B4 2 123 -169 5 1029 471 18 0 0 chr9 58263578 58263634 -65812538 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1029 648 0 0 0 chr9 58263634 58263706 -65812466 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1029 405 0 0 0 chr9 58263773 58263818 -65812354 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1029 517 260 275 14 chr9 58264181 58264388 -65811784 - RMER15 LTR ERVL -38 537 277 5 1029 477 0 0 0 chr9 58264918 58264971 -65811201 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1029 2983 148 81 27 chr9 58265068 58265623 -65810549 - RMER4B LTR ERVK 0 585 1 5 1029 641 246 136 32 chr9 58265829 58266123 -65810049 - MTD LTR MaLR -15 404 1 5 1029 452 231 231 0 chr9 58266405 58266526 -65809646 + B1F SINE Alu 1 149 0 5 1029 509 238 115 0 chr9 58266530 58266652 -65809520 + ID_B1 SINE B4 81 216 -8 5 1029 405 0 0 0 chr9 58266842 58266887 -65809285 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1029 231 191 141 87 chr9 58267650 58267742 -65808430 + Tigger7 DNA MER2_type 1486 1582 -909 5 1029 940 115 0 18 chr9 58268407 58268629 -65807543 + (TG)n Simple_repeat Simple_repeat 1 218 0 5 1029 711 280 83 19 chr9 58268629 58268895 -65807277 - B4A SINE B4 -9 283 1 5 1029 189 321 57 0 chr9 58269790 58269843 -65806329 - L2c LINE L2 0 3387 3332 5 1029 189 378 0 24 chr9 58269792 58269876 -65806296 - MIRm SINE MIR 0 276 195 5 1029 539 155 10 0 chr9 58270204 58270307 -65805865 + GA-rich Low_complexity Low_complexity 1 104 0 5 1029 333 0 0 0 chr9 58270438 58270475 -65805697 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1029 807 266 40 5 chr9 58270482 58270682 -65805490 - ID_B1 SINE B4 -17 207 1 5 1029 414 0 0 0 chr9 58271230 58271276 -65804896 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1029 3313 160 25 75 chr9 58271311 58271952 -65804220 - RMER19C LTR ERVK 0 611 3 5 1029 739 238 152 5 chr9 58271963 58272174 -65803998 - B4A SINE B4 -50 242 1 5 1029 319 296 29 39 chr9 58272678 58272780 -65803392 + RSINE1 SINE B4 57 157 -8 5 1029 396 0 0 0 chr9 58272783 58272827 -65803345 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1029 330 366 8 8 chr9 58273185 58273317 -65802855 + MIRc SINE MIR 94 225 -43 5 1029 402 233 0 32 chr9 58273547 58273640 -65802532 - RMER30 DNA MER1_type -8 194 105 5 1029 274 281 37 0 chr9 58273618 58273700 -65802472 - RMER30 DNA MER1_type -108 94 10 5 1029 28 0 0 0 chr9 58273800 58273828 -65802344 + AT_rich Low_complexity Low_complexity 1 28 0 5 1029 702 259 32 0 chr9 58273838 58273996 -65802176 - RSINE1 SINE B4 0 165 3 5 1029 1175 270 35 18 chr9 58275152 58275435 -65800737 - B4A SINE B4 -4 288 1 5 1029 812 296 18 95 chr9 58275780 58276053 -65800119 + B4 SINE B4 2 253 -39 5 1029 287 180 0 16 chr9 58276509 58276571 -65799601 + MADE2 DNA Mariner 20 80 0 5 1029 222 62 0 0 chr9 58277437 58277469 -65798703 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 1029 795 11 0 0 chr9 58278078 58278170 -65798002 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 1029 880 193 0 0 chr9 58279497 58279647 -65796525 - B1_Mur4 SINE Alu 0 150 1 5 1029 517 276 44 29 chr9 58279649 58279854 -65796318 - RLTR42-int LTR ERVK -4151 1371 1164 5 1029 1132 55 7 0 chr9 58280349 58280494 -65795678 + B1_Mm SINE Alu 2 147 0 5 1029 210 354 51 42 chr9 58281257 58281375 -65794797 + MIR SINE MIR 8 126 -136 5 1029 425 66 16 0 chr9 58282620 58282681 -65793491 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1029 1339 125 4 30 chr9 58283038 58283269 -65792903 + URR1B DNA MER1_type 1 225 0 5 1029 298 275 9 35 chr9 58284224 58284337 -65791835 + CT-rich Low_complexity Low_complexity 1 110 0 5 1029 970 270 21 21 chr9 58284979 58285263 -65790909 - MER58B DNA MER1_type -18 323 40 5 1029 670 276 91 36 chr9 58285447 58285778 -65790394 + MamRep605 Unknown Unknown 464 812 -64 5 1029 450 0 0 0 chr9 58286566 58286616 -65789556 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1029 181 195 0 0 chr9 58287287 58287328 -65788844 + MIR SINE MIR 110 150 -112 5 1029 460 226 23 31 chr9 58287328 58287456 -65788716 + B1F2 SINE Alu 1 127 -22 5 1029 246 355 0 22 chr9 58289453 58289492 -65786680 + ID SINE ID 47 83 -141 5 1029 277 244 112 25 chr9 58289492 58289572 -65786600 + PB1D10 SINE Alu 3 89 -28 5 1029 290 305 75 9 chr9 58291616 58291722 -65784450 + MER81 DNA AcHobo 1 113 -1 5 1029 312 256 66 11 chr9 58293415 58293506 -65782666 + L1MCa LINE L1 2178 2273 -4235 5 1029 669 219 15 0 chr9 58293512 58293649 -65782523 + B1_Mur3 SINE Alu 3 141 -8 5 1029 235 374 59 113 chr9 58293661 58293848 -65782324 - MLT1J LTR MaLR -92 420 237 5 1029 1094 185 130 49 chr9 58293848 58294155 -65782017 - IAPEY3_LTR LTR ERVK 0 332 1 5 1029 235 374 59 113 chr9 58294155 58294175 -65781997 - MLT1J LTR MaLR -276 236 220 5 1029 940 102 156 0 chr9 58294175 58294342 -65781830 + B2_Mm2 SINE B2 1 193 -2 5 1029 235 374 59 113 chr9 58294342 58294504 -65781668 - MLT1J LTR MaLR -293 219 70 5 1029 439 294 0 58 chr9 58295147 58295338 -65780834 + GA-rich Low_complexity Low_complexity 1 180 0 5 1029 1093 141 55 45 chr9 58295580 58295781 -65780391 + URR1A DNA MER1_type 7 209 -17 5 1029 488 141 82 0 chr9 58296232 58296317 -65779855 - URR1A DNA MER1_type -96 130 39 5 1029 399 41 0 0 chr9 58296330 58296379 -65779793 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1029 280 264 0 0 chr9 58296386 58296458 -65779714 - MIRm SINE MIR -125 151 80 5 1029 1212 131 48 77 chr9 58296664 58296855 -65779317 + RMER10B LTR ERVL 1 193 -205 5 1029 1273 67 0 16 chr9 58296855 58297038 -65779134 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5 1029 1212 131 48 77 chr9 58297038 58297119 -65779053 + RMER10B LTR ERVL 194 265 -133 5 1029 221 231 0 0 chr9 58297119 58297158 -65779014 + polypyrimidine Low_complexity Low_complexity 3 41 0 5 1029 956 144 45 25 chr9 58297162 58297361 -65778811 + RMER10B LTR ERVL 194 396 -2 5 1029 813 131 20 46 chr9 58298135 58298287 -65777885 - B1_Mur2 SINE Alu 0 149 2 5 1029 631 280 61 32 chr9 58298329 58298609 -65777563 - B4A SINE B4 0 292 5 5 1029 979 164 124 0 chr9 58298884 58299085 -65777087 - URR1A DNA MER1_type 0 226 1 5 1029 544 295 50 58 chr9 58300728 58301005 -65775167 + B4A SINE B4 3 277 -15 5 1029 1427 163 43 16 chr9 58302526 58302781 -65773391 - RLTR41 LTR ERV1 -40 406 145 5 1029 847 167 58 29 chr9 58302801 58302974 -65773198 - RLTR41 LTR ERV1 -268 178 1 5 1029 207 325 39 0 chr9 58302974 58303051 -65773121 - L2c LINE L2 -39 3348 3269 5 1029 281 290 40 126 chr9 58304190 58304385 -65771787 - MIRb SINE MIR 0 262 86 5 1029 440 298 99 0 chr9 58306223 58306364 -65769808 + B3A SINE B2 2 156 -42 5 1029 224 150 0 0 chr9 58307807 58307847 -65768325 - MIRc SINE MIR -144 124 85 5 1029 2006 114 6 58 chr9 58308778 58309122 -65767050 + ORR1A3 LTR MaLR 1 326 0 5 1029 7972 122 3 3 chr9 58309128 58310277 -65765895 + MERVL_2A-int LTR ERVL 2610 3758 -2003 5 1029 434 208 189 0 chr9 58310666 58310772 -65765400 + MTEa LTR MaLR 2 127 -252 6 1029 615 208 22 37 chr9 58310800 58310935 -65765237 - RSINE1 SINE B4 -31 134 2 6 1029 487 203 6 193 chr9 58310935 58311063 -65765109 - MLT1A0 LTR MaLR -211 154 49 6 1029 506 316 10 15 chr9 58311063 58311262 -65764910 - B3A SINE B2 0 198 1 6 1029 487 203 6 193 chr9 58311262 58311304 -65764868 - MLT1A0 LTR MaLR -317 48 16 6 1029 21 0 0 0 chr9 58311580 58311601 -65764571 + AT_rich Low_complexity Low_complexity 1 21 0 6 1029 279 0 0 0 chr9 58311601 58311632 -65764540 + (TGG)n Simple_repeat Simple_repeat 1 31 0 6 1029 741 148 94 0 chr9 58311632 58311760 -65764412 - B1_Mus2 SINE Alu -7 140 1 6 1029 561 30 0 0 chr9 58311856 58311923 -65764249 + (GGGA)n Simple_repeat Simple_repeat 2 68 0 6 1029 1146 55 0 0 chr9 58311956 58312102 -65764070 + B1_Mm SINE Alu 2 147 0 6 1029 241 216 0 19 chr9 58312140 58312192 -65763980 + L1M5 LINE L1 3609 3659 -2487 6 1029 1183 238 45 31 chr9 58313146 58313433 -65762739 - B4A SINE B4 0 292 2 6 1029 231 305 102 2 chr9 58313504 58313613 -65762559 + MIRc SINE MIR 39 158 -110 6 1029 932 121 6 6 chr9 58313635 58313793 -65762379 - URR1B DNA MER1_type 0 225 68 6 1029 190 306 67 67 chr9 58314655 58314760 -65761412 + L2b LINE L2 3270 3374 -1 6 1029 200 213 0 21 chr9 58314760 58314808 -65761364 + GA-rich Low_complexity Low_complexity 1 47 0 6 1029 405 0 0 0 chr9 58315519 58315564 -65760608 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1029 497 289 144 21 chr9 58316888 58317082 -65759090 + ID_B1 SINE B4 1 218 -6 6 1029 219 69 0 0 chr9 58317259 58317288 -65758884 + (CTCA)n Simple_repeat Simple_repeat 4 32 0 6 1029 224 345 112 0 chr9 58317289 58317405 -65758767 + MIR SINE MIR 83 211 -51 6 1029 396 301 72 85 chr9 58317721 58317957 -65758215 - MIRb SINE MIR -1 267 35 6 1029 614 320 58 37 chr9 58319227 58319662 -65756510 + L1M5 LINE L1 3833 4276 -1870 6 1029 219 199 91 53 chr9 58320156 58320250 -65755922 + BC1_Mm scRNA scRNA 6 101 -51 6 1029 676 284 4 174 chr9 58320242 58320329 -65755843 + ID SINE ID 6 86 -138 6 1029 819 254 114 8 chr9 58320329 58320575 -65755597 + B4 SINE B4 3 274 -18 6 1029 676 284 4 174 chr9 58320575 58320751 -65755421 + ID_B1 SINE B4 87 224 0 6 1029 742 184 88 6 chr9 58323110 58323269 -65752903 + B2_Mm2 SINE B2 2 173 -22 6 1029 413 270 232 0 chr9 58323501 58323734 -65752438 + L1M5 LINE L1 5535 5821 -303 6 1029 519 160 91 36 chr9 58324150 58324260 -65751912 + B1_Mur1 SINE Alu 34 149 0 6 1029 267 252 382 8 chr9 58324377 58324500 -65751672 - ID_B1 SINE B4 -55 169 1 6 1029 31 26 0 0 chr9 58324626 58324664 -65751508 + AT_rich Low_complexity Low_complexity 1 38 0 6 1029 695 267 87 0 chr9 58325906 58326112 -65750060 - ID_B1 SINE B4 0 224 1 6 1029 23 0 0 0 chr9 58326279 58326302 -65749870 + AT_rich Low_complexity Low_complexity 1 23 0 6 1029 251 215 15 0 chr9 58326345 58326410 -65749762 + CT-rich Low_complexity Low_complexity 2 67 0 6 1029 953 155 0 0 chr9 58326411 58326559 -65749613 - B1_Mus1 SINE Alu 0 148 1 6 1030 708 194 23 0 chr9 58328524 58328653 -65747519 + B1_Mur1 SINE Alu 12 143 -6 6 1030 941 160 9 16 chr9 58328653 58329153 -65747019 + GA-rich Low_complexity Low_complexity 1 496 0 6 1030 305 324 52 33 chr9 58329160 58329313 -65746859 + L1MEe LINE L1 707 862 -3992 6 1030 675 209 30 0 chr9 58329815 58329949 -65746223 + B1_Mur1 SINE Alu 10 147 -2 6 1030 832 263 15 0 chr9 58330058 58330256 -65745916 + ID_B1 SINE B4 7 207 -17 6 1030 729 215 0 7 chr9 58330719 58330864 -65745308 + B1_Mur3 SINE Alu 4 147 -2 6 1030 626 232 226 0 chr9 58331691 58331881 -65744291 - B4 SINE B4 -59 233 1 6 1030 214 236 18 0 chr9 58331905 58331960 -65744212 - MIRb SINE MIR -169 99 44 6 1030 241 306 16 0 chr9 58332302 58332364 -65743808 - MLT1K LTR MaLR -383 212 150 6 1030 295 116 0 0 chr9 58332824 58332867 -65743305 - MIRc SINE MIR -147 121 79 6 1030 216 352 169 0 chr9 58333082 58333355 -65742817 - L3 LINE CR1 -286 4203 3885 6 1030 236 328 124 48 chr9 58333926 58334176 -65741996 + L2 LINE L2 1917 2185 -1234 6 1030 216 0 0 0 chr9 58334721 58334745 -65741427 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1030 720 136 113 8 chr9 58334757 58334890 -65741282 - B1_Mur4 SINE Alu -1 149 3 6 1030 579 180 0 0 chr9 58335322 58335433 -65740739 + GA-rich Low_complexity Low_complexity 2 112 0 6 1030 261 242 30 0 chr9 58335499 58335565 -65740607 + L2b LINE L2 3300 3367 -8 6 1030 22 0 0 0 chr9 58335881 58335903 -65740269 + GC_rich Low_complexity Low_complexity 1 22 0 6 1030 27 49 0 0 chr9 58335963 58336004 -65740168 + GC_rich Low_complexity Low_complexity 1 41 0 6 1030 221 0 0 33 chr9 58336038 58336068 -65740104 + (CAGGG)n Simple_repeat Simple_repeat 3 31 0 6 1030 297 0 0 0 chr9 58337338 58337371 -65738801 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 6 1030 21 36 0 0 chr9 58338770 58338798 -65737374 + AT_rich Low_complexity Low_complexity 1 28 0 6 1030 447 372 0 0 chr9 58339640 58339793 -65736379 - MIR3 SINE MIR -22 186 34 6 1030 396 276 102 14 chr9 58341149 58341296 -65734876 + MIR3 SINE MIR 21 180 -28 6 1030 299 267 13 39 chr9 58341348 58341426 -65734746 - ID4 SINE ID -4 79 4 6 1030 211 324 0 26 chr9 58342760 58342836 -65733336 + (CACG)n Simple_repeat Simple_repeat 4 77 0 6 1030 188 324 95 0 chr9 58344220 58344294 -65731878 - MIRb SINE MIR -141 127 47 6 1030 207 233 0 0 chr9 58345031 58345074 -65731098 - MIRc SINE MIR -137 131 89 6 1030 779 200 144 62 chr9 58346316 58346524 -65729648 - B4 SINE B4 -67 225 1 6 1030 477 0 0 0 chr9 58346609 58346662 -65729510 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1030 477 0 0 0 chr9 58346662 58346714 -65729458 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1030 204 182 0 0 chr9 58347215 58347259 -65728913 + GA-rich Low_complexity Low_complexity 2 45 0 6 1030 24 0 0 0 chr9 58347528 58347552 -65728620 + AT_rich Low_complexity Low_complexity 1 24 0 6 1030 366 202 16 3 chr9 58348446 58348540 -65727632 - MIRc SINE MIR -85 177 80 6 1030 283 358 97 0 chr9 58348583 58348748 -65727424 + MIRc SINE MIR 64 244 -24 6 1030 184 263 0 0 chr9 58349397 58349435 -65726737 - MIRm SINE MIR -121 155 118 6 1030 502 256 112 25 chr9 58349975 58350171 -65726001 - MIRb SINE MIR 0 268 56 6 1030 369 0 0 0 chr9 58350918 58350959 -65725213 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1030 27 49 0 0 chr9 58352459 58352500 -65723672 + AT_rich Low_complexity Low_complexity 1 41 0 6 1030 25 31 0 0 chr9 58352605 58352637 -65723535 + AT_rich Low_complexity Low_complexity 1 32 0 6 1030 272 352 74 0 chr9 58352664 58352786 -65723386 - Lx8 LINE L1 -186 7287 7157 6 1030 396 252 151 88 chr9 58352948 58353187 -65722985 - ORR1E LTR MaLR -43 316 63 6 1030 234 343 10 39 chr9 58353231 58353334 -65722838 - ORR1E LTR MaLR -259 100 1 6 1030 581 0 14 0 chr9 58354160 58354229 -65721943 + (TTTTG)n Simple_repeat Simple_repeat 3 72 0 6 1030 907 131 0 14 chr9 58354229 58354368 -65721804 - B1_Mur4 SINE Alu -12 138 2 6 1030 28 0 0 0 chr9 58355075 58355103 -65721069 + AT_rich Low_complexity Low_complexity 1 28 0 6 1030 871 219 85 113 chr9 58355678 58355961 -65720211 - MTE2a LTR MaLR -5 374 100 6 1030 231 383 0 45 chr9 58356304 58356416 -65719756 + MIRb SINE MIR 33 139 -129 6 1030 1540 45 0 6 chr9 58356714 58356894 -65719278 + B2_Mm2 SINE B2 2 180 -15 6 1030 732 103 0 0 chr9 58356894 58357001 -65719171 + (GAAA)n Simple_repeat Simple_repeat 1 107 0 6 1030 219 318 0 15 chr9 58358915 58358982 -65717190 - B4A SINE B4 -141 151 86 6 1030 542 229 65 8 chr9 58358996 58359119 -65717053 - ID_B1 SINE B4 -92 132 3 6 1030 637 285 193 55 chr9 58359204 58359503 -65716669 - MLT1D LTR MaLR -74 431 92 6 1030 445 306 97 11 chr9 58359503 58359577 -65716595 + RMER30 DNA MER1_type 1 77 -125 6 1030 1335 87 5 21 chr9 58359577 58359766 -65716406 + B2_Mm2 SINE B2 1 186 -9 6 1030 445 306 97 11 chr9 58359766 58359876 -65716296 + RMER30 DNA MER1_type 78 201 -1 6 1030 637 285 193 55 chr9 58359876 58359955 -65716217 - MLT1D LTR MaLR -414 91 2 6 1030 242 274 0 0 chr9 58360054 58360105 -65716067 + polypyrimidine Low_complexity Low_complexity 3 53 0 6 1030 1187 245 50 11 chr9 58360430 58360711 -65715461 - B4 SINE B4 0 292 1 6 1030 579 247 287 30 chr9 58360902 58361132 -65715040 + B4 SINE B4 1 289 -3 6 1030 399 214 0 0 chr9 58361137 58361263 -65714909 + (CA)n Simple_repeat Simple_repeat 1 126 0 6 1030 454 290 92 50 chr9 58363795 58364013 -65712159 - MamRep434 DNA TcMar -179 247 21 6 1030 360 173 13 51 chr9 58364647 58364726 -65711446 + B3 SINE B2 1 76 -140 6 1030 706 267 109 18 chr9 58364817 58365046 -65711126 + B4A SINE B4 2 251 -41 6 1030 1265 87 49 11 chr9 58365164 58365349 -65710823 - B2_Mm2 SINE B2 -2 193 2 6 1030 378 0 0 0 chr9 58366244 58366286 -65709886 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1030 388 269 88 51 chr9 58366318 58366455 -65709717 + MER5B DNA MER1_type 25 166 -12 6 1030 556 246 119 7 chr9 58367287 58367430 -65708742 + ID_B1 SINE B4 40 198 -26 6 1030 1194 115 0 115 chr9 58367621 58367838 -65708334 + B2_Mm1a SINE B2 1 192 -1 6 1030 216 0 0 0 chr9 58367840 58367864 -65708308 + (GAA)n Simple_repeat Simple_repeat 2 25 0 6 1030 354 336 106 0 chr9 58367864 58368081 -65708091 + L1ME3 LINE L1 5880 6119 -43 6 1030 211 314 57 0 chr9 58368319 58368389 -65707783 + B4A SINE B4 14 87 -205 6 1030 350 231 26 0 chr9 58368461 58368539 -65707633 + B4A SINE B4 195 274 -18 6 1030 180 0 0 0 chr9 58368586 58368606 -65707566 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1030 191 277 125 57 chr9 58369210 58369298 -65706874 - MIRc SINE MIR -59 209 116 7 1030 1041 237 14 14 chr9 58369628 58369850 -65706322 - ID_B1 SINE B4 -2 222 1 7 1030 1983 166 69 3 chr9 58370327 58370702 -65705470 + MTD LTR MaLR 12 411 -8 7 1030 6819 111 95 18 chr9 58370752 58371861 -65704311 + Lx2 LINE L1 5801 6994 -3 7 1030 523 200 64 0 chr9 58372169 58372279 -65703893 - B1_Mus1 SINE Alu 0 148 32 7 1030 270 314 58 36 chr9 58372948 58373210 -65702962 + RLTR15 LTR ERVK 48 298 -61 7 1030 396 286 57 25 chr9 58374877 58375035 -65701137 + MLT1J LTR MaLR 83 245 -267 7 1030 204 125 0 0 chr9 58376506 58376538 -65699634 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1030 806 241 32 213 chr9 58376539 58376887 -65699285 - B4A SINE B4 -7 285 1 7 1030 539 180 18 18 chr9 58377531 58377644 -65698528 + B3 SINE B2 2 114 -102 7 1030 26 50 0 0 chr9 58377679 58377719 -65698453 + AT_rich Low_complexity Low_complexity 1 40 0 7 1030 707 300 75 20 chr9 58377919 58378171 -65698001 - B4A SINE B4 0 292 27 7 1030 241 271 29 0 chr9 58378225 58378295 -65697877 + MLT1J LTR MaLR 337 408 0 7 1030 297 135 0 0 chr9 58378331 58378383 -65697789 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1030 912 134 69 11 chr9 58378923 58379097 -65697075 - B2_Mm2 SINE B2 0 195 12 7 1030 236 194 48 16 chr9 58379100 58379163 -65697009 + MLT1A1 LTR MaLR 340 404 -4 7 1030 250 325 58 25 chr9 58379417 58379537 -65696635 + Cheshire DNA MER1_type 1 124 -2296 7 1030 748 232 58 43 chr9 58379562 58379769 -65696403 + ID_B1 SINE B4 5 214 -10 7 1030 594 225 14 35 chr9 58380646 58380789 -65695383 + RSINE1 SINE B4 25 164 -1 7 1030 28 48 0 0 chr9 58380904 58380946 -65695226 + AT_rich Low_complexity Low_complexity 1 42 0 7 1030 234 81 0 0 chr9 58381812 58381849 -65694323 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 7 1030 198 0 0 0 chr9 58381853 58381875 -65694297 + (TTG)n Simple_repeat Simple_repeat 2 23 0 7 1030 249 33 0 0 chr9 58381894 58381924 -65694248 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1030 691 270 0 33 chr9 58381933 58382117 -65694055 - B3A SINE B2 -19 179 2 7 1030 234 0 0 0 chr9 58385760 58385786 -65690386 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1030 262 167 0 0 chr9 58386110 58386158 -65690014 - L2b LINE L2 -301 3074 3027 7 1030 241 216 37 110 chr9 58386439 58386466 -65689706 + RLTR25B LTR ERVK 411 486 -542 7 1030 504 133 0 0 chr9 58386466 58386541 -65689631 + B1F2 SINE Alu 33 107 -42 7 1030 1393 144 88 63 chr9 58386649 58386967 -65689205 + ORR1D1 LTR MaLR 1 326 -48 7 1030 1263 48 0 0 chr9 58386980 58387127 -65689045 + B1_Mus1 SINE Alu 2 148 0 7 1030 303 219 112 20 chr9 58387127 58387215 -65688957 + L1MEg LINE L1 1857 1955 -4129 7 1030 567 78 0 0 chr9 58387215 58387292 -65688880 + (GGGA)n Simple_repeat Simple_repeat 1 77 0 7 1030 893 164 7 14 chr9 58387631 58387779 -65688393 + B1_Mur2 SINE Alu 2 148 -1 7 1030 429 335 65 62 chr9 58387944 58388250 -65687922 - L2a LINE L2 -62 3364 3058 7 1030 197 218 33 105 chr9 58388255 58388359 -65687813 - MIRc SINE MIR -77 199 100 7 1030 695 288 13 22 chr9 58390053 58390277 -65685895 + ID_B1 SINE B4 1 222 -2 7 1030 195 268 18 0 chr9 58390429 58390485 -65685687 + L2 LINE L2 2806 2862 -557 7 1030 741 266 45 81 chr9 58391386 58391632 -65684540 + B4 SINE B4 38 274 -18 7 1030 198 0 0 0 chr9 58391659 58391681 -65684491 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1030 1157 242 114 6 chr9 58391751 58392067 -65684105 + ORR1D1 LTR MaLR 2 351 -23 7 1030 1188 170 19 14 chr9 58392136 58392345 -65683827 + B3 SINE B2 1 210 -6 7 1030 387 244 56 0 chr9 58392431 58392521 -65683651 - RSINE1 SINE B4 -58 107 13 7 1030 627 307 144 22 chr9 58392707 58393067 -65683105 + MLT1J LTR MaLR 74 477 -35 7 1030 233 294 116 24 chr9 58393645 58393809 -65682363 - L3 LINE CR1 -146 4343 4165 7 1030 180 0 0 0 chr9 58393858 58393878 -65682294 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1030 408 205 238 42 chr9 58394003 58394171 -65682001 - B4 SINE B4 -91 201 1 7 1030 600 40 0 0 chr9 58394764 58394839 -65681333 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 1030 283 303 144 31 chr9 58394990 58395184 -65680988 + MLT1K LTR MaLR 138 353 -242 7 1030 311 165 0 151 chr9 58395221 58395314 -65680858 + B4A SINE B4 1 79 -213 7 1030 1084 127 196 0 chr9 58395316 58395505 -65680667 + URR1A DNA MER1_type 1 226 0 7 1030 225 0 0 0 chr9 58395546 58395571 -65680601 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1030 219 152 0 0 chr9 58395600 58395646 -65680526 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1030 23 0 0 0 chr9 58396351 58396374 -65679798 + GC_rich Low_complexity Low_complexity 1 23 0 7 1030 267 288 158 22 chr9 58396487 58396631 -65679541 + MIR SINE MIR 10 177 -91 7 1030 182 333 0 0 chr9 58397960 58398017 -65678155 + MIRb SINE MIR 135 191 -77 7 1030 281 68 0 22 chr9 58398067 58398112 -65678060 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1030 234 318 15 15 chr9 58398126 58398193 -65677979 - RSINE1 SINE B4 -21 144 78 7 1030 245 205 205 0 chr9 58398267 58398345 -65677827 - B4A SINE B4 -196 96 3 7 1030 399 315 54 0 chr9 58398376 58398493 -65677679 - ID_B1 SINE B4 -2 222 99 7 1030 645 247 320 38 chr9 58398493 58398965 -65677207 + RMER20B LTR ERVK 1 605 -22 7 1030 736 224 79 42 chr9 58400914 58401128 -65675044 - ID_B1 SINE B4 0 224 3 7 1030 588 196 27 0 chr9 58401630 58401742 -65674430 + PB1D9 SINE Alu 6 120 0 7 1030 189 0 0 0 chr9 58403638 58403659 -65672513 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1030 194 312 71 51 chr9 58403840 58403938 -65672234 - MIRb SINE MIR -83 185 86 7 1030 405 258 62 31 chr9 58404018 58404178 -65671994 - MIR SINE MIR -34 228 64 7 1030 221 319 14 0 chr9 58404285 58404357 -65671815 - RSINE1 SINE B4 -14 151 79 7 1030 225 0 0 0 chr9 58404373 58404398 -65671774 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1030 563 146 10 0 chr9 58404860 58404956 -65671216 + ORR1D1 LTR MaLR 1 97 -277 7 1030 2818 22 0 6 chr9 58404957 58405281 -65670891 - RLTRETN_Mm LTR ERVK 0 322 1 7 1030 1106 211 23 9 chr9 58405291 58405506 -65670666 - ID_B1 SINE B4 -6 218 1 7 1030 263 350 75 13 chr9 58405509 58405668 -65670504 - LTR84b LTR ERVL -582 179 11 7 1030 951 272 9 0 chr9 58406355 58406584 -65669588 + B4A SINE B4 1 231 -61 7 1030 733 189 15 8 chr9 58406584 58406717 -65669455 + B1_Mur1 SINE Alu 1 134 -15 7 1030 496 308 62 71 chr9 58406717 58406793 -65669379 + B4 SINE B4 86 292 0 7 1030 1056 75 0 13 chr9 58407916 58408065 -65668107 + B1_Mus1 SINE Alu 1 147 -1 7 1030 496 216 94 8 chr9 58408308 58408579 -65667593 - ORR1D1 LTR MaLR -15 359 1 7 1030 603 273 0 0 chr9 58408682 58408810 -65667362 - B1F1 SINE Alu -16 133 6 7 1030 291 340 34 61 chr9 58408706 58408853 -65667319 - B4 SINE B4 -94 198 56 7 1030 615 189 22 29 chr9 58408827 58408963 -65667209 + RSINE1 SINE B4 19 153 -12 7 1030 425 66 16 0 chr9 58408987 58409048 -65667124 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1030 357 169 20 69 chr9 58409596 58409698 -65666474 - PB1D10 SINE Alu -19 98 2 7 1030 339 314 153 24 chr9 58409742 58410121 -65666051 + L2 LINE L2 2173 2600 -819 7 1030 461 252 9 9 chr9 58410438 58410550 -65665622 - PB1D10 SINE Alu 0 117 6 7 1030 599 291 69 81 chr9 58410850 58410988 -65665184 + RMER19B LTR ERVK 1 150 -587 7 1030 1096 89 0 0 chr9 58410988 58411134 -65665038 + B1_Mus2 SINE Alu 2 147 0 7 1030 4159 167 60 24 chr9 58411134 58411971 -65664201 + RMER19B LTR ERVK 71 895 -7 7 1030 683 279 64 10 chr9 58412068 58412271 -65663901 - B3 SINE B2 -1 215 2 7 1030 276 53 0 0 chr9 58412997 58413035 -65663137 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 1030 230 141 81 12 chr9 58413050 58413136 -65663036 + (TA)n Simple_repeat Simple_repeat 2 93 0 7 1030 254 132 19 0 chr9 58413147 58413200 -65662972 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 7 1030 688 266 71 24 chr9 58413247 58413459 -65662713 + ID_B1 SINE B4 1 222 -2 7 1030 186 43 0 0 chr9 58414016 58414039 -65662133 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1030 1204 54 0 0 chr9 58414039 58414186 -65661986 - B1_Mm SINE Alu 0 147 1 7 1030 279 173 39 0 chr9 58414575 58414627 -65661545 + B1_Mur1 SINE Alu 86 139 -10 7 1030 243 0 0 0 chr9 58414792 58414819 -65661353 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1030 1208 68 0 0 chr9 58415002 58415149 -65661023 + B1_Mus1 SINE Alu 2 148 0 7 1030 330 132 0 0 chr9 58415149 58415202 -65660970 + (A)n Simple_repeat Simple_repeat 1 53 0 7 1030 304 269 72 58 chr9 58415202 58415340 -65660832 + L1MA5 LINE L1 5793 5932 -368 7 1030 21 0 0 0 chr9 58415354 58415375 -65660797 + AT_rich Low_complexity Low_complexity 1 21 0 7 1030 22 0 0 0 chr9 58415455 58415477 -65660695 + AT_rich Low_complexity Low_complexity 1 22 0 7 1030 469 202 21 11 chr9 58415595 58415690 -65660482 - B3 SINE B2 0 216 121 7 1030 420 290 0 0 chr9 58415684 58415784 -65660388 + ID_B1 SINE B4 93 192 -32 7 1030 315 295 34 43 chr9 58415784 58415801 -65660371 + B1_Mur1 SINE Alu 12 127 -22 7 1030 1164 196 10 0 chr9 58415840 58416049 -65660123 + B3 SINE B2 1 211 -5 8 1030 25 0 0 0 chr9 58416130 58416155 -65660017 + AT_rich Low_complexity Low_complexity 1 25 0 8 1030 1153 62 7 0 chr9 58416155 58416301 -65659871 - B1_Mus2 SINE Alu 0 147 1 8 1030 574 235 64 29 chr9 58416742 58416882 -65659290 + B1_Mur4 SINE Alu 1 145 -5 8 1030 255 351 26 33 chr9 58416752 58416905 -65659267 + B4A SINE B4 95 246 -46 8 1030 1753 104 111 101 chr9 58416913 58417319 -65658853 + RMER17C LTR ERVK 1 410 0 8 1030 1167 84 0 0 chr9 58417644 58417787 -65658385 - B1_Mus1 SINE Alu -5 143 1 8 1030 802 232 72 0 chr9 58417845 58418026 -65658146 + B3A SINE B2 4 197 -1 8 1030 845 188 0 26 chr9 58418032 58418185 -65657987 + B1_Mur2 SINE Alu 1 149 0 8 1030 1208 28 0 14 chr9 58418218 58418357 -65657815 + B1_Mm SINE Alu 1 139 -8 8 1030 201 39 0 0 chr9 58418357 58418383 -65657789 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1030 693 280 64 103 chr9 58418700 58419030 -65657142 - MTE2a LTR MaLR 0 379 63 8 1030 640 233 105 9 chr9 58419185 58419366 -65656806 + B3 SINE B2 5 187 -8 8 1030 207 0 0 0 chr9 58419552 58419575 -65656597 + (CTTG)n Simple_repeat Simple_repeat 4 26 0 8 1030 1224 98 6 11 chr9 58419954 58420110 -65656062 + B2_Mm2 SINE B2 3 158 -37 8 1030 330 26 0 0 chr9 58420110 58420149 -65656023 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 8 1030 1224 98 6 11 chr9 58420149 58420167 -65656005 + B2_Mm2 SINE B2 159 176 -19 8 1030 464 345 73 35 chr9 58420170 58420209 -65655963 + HAL1 LINE L1 866 902 -1605 8 1030 1087 70 35 0 chr9 58420209 58420351 -65655821 + B1_Mus2 SINE Alu 1 147 0 8 1030 464 345 73 35 chr9 58420351 58420654 -65655518 + HAL1 LINE L1 903 1220 -1287 8 1030 528 262 48 0 chr9 58420842 58420987 -65655185 - RSINE1 SINE B4 -8 157 6 8 1030 582 98 0 0 chr9 58421103 58421185 -65654987 + B2_Mm1a SINE B2 79 160 -33 8 1030 252 0 0 0 chr9 58421185 58421213 -65654959 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 8 1030 1551 41 5 45 chr9 58421237 58421439 -65654733 + B2_Mm2 SINE B2 2 195 0 8 1030 378 281 35 0 chr9 58422296 58422410 -65653762 + ID_B1 SINE B4 102 219 -5 8 1030 983 24 0 0 chr9 58422451 58422577 -65653595 + B1_Mus1 SINE Alu 2 127 -21 8 1030 1209 54 0 0 chr9 58422845 58422993 -65653179 - B1_Mus1 SINE Alu 0 148 1 8 1030 1351 62 79 0 chr9 58423000 58423019 -65653153 - B2_Mm1t SINE B2 -1 192 164 8 1030 564 77 0 0 chr9 58423019 58423097 -65653075 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 8 1030 1351 62 79 0 chr9 58423097 58423255 -65652917 - B2_Mm1t SINE B2 -30 163 3 8 1030 392 306 64 28 chr9 58423266 58423515 -65652657 + L1_Mur2 LINE L1 1663 1920 -3957 8 1030 651 182 157 25 chr9 58423535 58423771 -65652401 - RMER4B LTR ERVK 0 585 319 8 1030 446 155 42 25 chr9 58423771 58423890 -65652282 + CT-rich Low_complexity Low_complexity 4 124 0 8 1030 1577 106 120 4 chr9 58423890 58424164 -65652008 - RMER4B LTR ERVK -246 339 34 8 1030 342 0 0 0 chr9 58424192 58424230 -65651942 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 8 1030 1183 45 0 0 chr9 58424231 58424385 -65651787 - B2_Mm1a SINE B2 -38 155 2 8 1030 245 264 207 9 chr9 58424571 58424682 -65651490 + MER5A DNA MER1_type 29 161 -28 8 1030 303 293 12 12 chr9 58424719 58424802 -65651370 + ID SINE ID 1 83 -141 8 1030 1253 21 7 0 chr9 58424897 58425042 -65651130 + B1_Mus1 SINE Alu 3 148 0 8 1030 590 202 0 0 chr9 58425062 58425171 -65651001 - B3 SINE B2 -105 111 3 8 1030 182 264 132 0 chr9 58425199 58425252 -65650920 - MER5B DNA MER1_type -73 105 46 8 1030 24 0 0 0 chr9 58425261 58425285 -65650887 + AT_rich Low_complexity Low_complexity 1 24 0 8 1030 779 283 76 25 chr9 58425310 58425586 -65650586 - B4A SINE B4 -2 290 1 8 1030 251 273 32 120 chr9 58425695 58425820 -65650352 + MER5B DNA MER1_type 64 177 -1 8 1030 408 272 49 49 chr9 58426823 58426966 -65649206 - B1F SINE Alu -4 145 3 8 1030 240 329 29 7 chr9 58427006 58427144 -65649028 + Charlie23a DNA MER1_type 179 319 -20 8 1030 967 243 9 0 chr9 58427521 58427731 -65648441 + B3 SINE B2 2 213 -3 8 1030 398 292 46 8 chr9 58427933 58428064 -65648108 - MLT1I LTR MaLR -242 169 34 8 1030 225 239 40 66 chr9 58428067 58428143 -65648029 + MIRc SINE MIR 70 143 -125 8 1030 303 93 0 0 chr9 58428330 58428373 -65647799 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 8 1030 767 65 0 0 chr9 58428374 58428481 -65647691 - B1_Mm SINE Alu 0 147 41 8 1030 252 189 77 51 chr9 58428417 58428495 -65647677 - RLTR25B LTR ERVK -519 509 430 8 1030 1662 31 0 5 chr9 58428495 58428689 -65647483 - B2_Mm1a SINE B2 0 193 1 8 1030 252 86 0 0 chr9 58428978 58429013 -65647159 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 8 1030 639 225 101 39 chr9 58429022 58429230 -65646942 - B4A SINE B4 -67 225 5 8 1030 238 290 21 0 chr9 58430120 58430213 -65645959 + C-rich Low_complexity Low_complexity 3 97 0 8 1030 27 29 0 0 chr9 58430342 58430376 -65645796 + GC_rich Low_complexity Low_complexity 1 34 0 8 1030 315 0 0 0 chr9 58432978 58433013 -65643159 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1030 367 213 203 8 chr9 58433135 58433258 -65642914 + MIRb SINE MIR 56 202 -66 8 1030 255 125 0 0 chr9 58434201 58434241 -65641931 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1030 1036 148 93 15 chr9 58434443 58434648 -65641524 + URR1A DNA MER1_type 1 221 -5 8 1030 240 333 14 0 chr9 58434691 58434760 -65641412 - ID_B1 SINE B4 -129 95 26 8 1030 276 220 0 0 chr9 58434869 58434919 -65641253 - RSINE1 SINE B4 -76 89 40 8 1030 786 76 195 0 chr9 58434994 58435112 -65641060 + B1_Mus2 SINE Alu 2 142 -5 8 1030 291 238 60 0 chr9 58435198 58435282 -65640890 - PB1D10 SINE Alu 0 117 29 8 1030 1120 63 7 0 chr9 58435509 58435652 -65640520 - B1_Mm SINE Alu -2 145 2 8 1030 316 275 310 39 chr9 58435857 58436012 -65640160 + B3A SINE B2 1 197 -1 8 1030 1209 77 50 91 chr9 58436239 58436301 -65639871 - B2_Mm2 SINE B2 -3 192 122 8 1030 1167 68 7 0 chr9 58436301 58436448 -65639724 + B1_Mus1 SINE Alu 1 148 0 8 1030 1209 77 50 91 chr9 58436448 58436584 -65639588 - B2_Mm2 SINE B2 -74 121 2 8 1030 35 24 0 0 chr9 58437115 58437157 -65639015 + AT_rich Low_complexity Low_complexity 1 42 0 8 1030 1134 69 7 0 chr9 58437430 58437575 -65638597 + B1_Mus1 SINE Alu 2 147 -1 8 1030 376 286 0 0 chr9 58437597 58437681 -65638491 - RSINE1 SINE B4 -39 126 43 8 1030 225 277 0 0 chr9 58437674 58437721 -65638451 + PB1D10 SINE Alu 64 110 -7 8 1030 497 254 163 23 chr9 58437774 58437903 -65638269 + RSINE1 SINE B4 4 150 -15 8 1030 1575 62 0 0 chr9 58438106 58438298 -65637874 - B2_Mm1a SINE B2 -1 192 1 8 1030 1273 78 56 0 chr9 58438589 58438768 -65637404 - B2_Mm1a SINE B2 -4 189 1 8 1030 293 266 254 0 chr9 58438887 58439060 -65637112 - L3 LINE CR1 -48 4441 4225 8 1030 33 56 0 0 chr9 58439195 58439249 -65636923 + AT_rich Low_complexity Low_complexity 1 54 0 8 1030 825 124 98 0 chr9 58439723 58439876 -65636296 + URR1A DNA MER1_type 59 226 0 8 1030 22 80 0 0 chr9 58439876 58439926 -65636246 + AT_rich Low_complexity Low_complexity 1 50 0 8 1030 198 0 0 0 chr9 58440081 58440103 -65636069 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1030 390 259 0 16 chr9 58440114 58440206 -65635966 - PB1D7 SINE Alu -16 104 14 8 1030 216 314 0 0 chr9 58440154 58440224 -65635948 - B4A SINE B4 -142 150 81 8 1030 661 226 166 0 chr9 58440231 58440412 -65635760 - B3 SINE B2 0 216 6 8 1030 215 79 26 0 chr9 58442523 58442561 -65633611 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 8 1030 23 0 0 0 chr9 58442915 58442938 -65633234 + AT_rich Low_complexity Low_complexity 1 23 0 8 1030 22 0 0 0 chr9 58442973 58442995 -65633177 + AT_rich Low_complexity Low_complexity 1 22 0 8 1030 657 138 139 42 chr9 58443252 58443418 -65632754 - B2_Mm2 SINE B2 -9 186 5 8 1030 1124 50 43 0 chr9 58443723 58443863 -65632309 + B1_Mus2 SINE Alu 2 147 0 8 1030 833 74 131 0 chr9 58444253 58444375 -65631797 + B1_Mus1 SINE Alu 1 138 -10 8 1030 216 0 0 0 chr9 58444375 58444399 -65631773 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1030 195 100 0 0 chr9 58446087 58446117 -65630055 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1030 1115 75 0 0 chr9 58446119 58446265 -65629907 - B1_Mus2 SINE Alu 0 147 2 8 1030 255 336 99 35 chr9 58446826 58446968 -65629204 - RSINE1 SINE B4 -9 156 6 8 1030 1479 73 16 0 chr9 58446976 58447167 -65629005 - B2_Mm2 SINE B2 -1 194 1 8 1030 180 0 0 0 chr9 58447173 58447193 -65628979 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1030 679 227 165 0 chr9 58447201 58447377 -65628795 - B3 SINE B2 -10 206 2 8 1030 283 246 198 58 chr9 58447383 58447504 -65628668 - B1F SINE Alu -7 142 5 8 1030 348 273 80 10 chr9 58447530 58447630 -65628542 - PB1D10 SINE Alu -7 110 4 8 1030 432 288 0 9 chr9 58447869 58447974 -65628198 + B4A SINE B4 189 292 0 8 1030 413 36 0 18 chr9 58447976 58448032 -65628140 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1030 745 274 25 8 chr9 58448192 58448435 -65627737 - L1MC1 LINE L1 -285 6048 5802 8 1030 449 275 91 8 chr9 58448876 58448997 -65627175 - RSINE1 SINE B4 -32 133 3 8 1030 786 317 32 69 chr9 58449312 58449637 -65626535 - B4 SINE B4 -2 290 1 8 1030 357 288 38 9 chr9 58449643 58449748 -65626424 - PB1D10 SINE Alu -8 109 2 9 1030 477 238 0 45 chr9 58449992 58450102 -65626070 + PB1D9 SINE Alu 3 107 -13 9 1030 282 56 0 0 chr9 58450102 58450138 -65626034 + (T)n Simple_repeat Simple_repeat 1 36 0 9 1030 1146 75 0 0 chr9 58450140 58450286 -65625886 - B1_Mus2 SINE Alu 0 147 2 9 1030 1155 89 0 0 chr9 58450377 58450523 -65625649 + B1_Mus2 SINE Alu 2 147 0 9 1030 3007 219 116 22 chr9 58451714 58452540 -65623632 - Lx8 LINE L1 -326 7147 6244 9 1030 297 0 0 0 chr9 58452583 58452616 -65623556 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1030 656 189 78 0 chr9 58452657 58452810 -65623362 - Lx8 LINE L1 -970 6503 6339 9 1030 327 162 37 12 chr9 58452810 58452891 -65623281 - L1_Rod LINE L1 -505 5342 5260 9 1030 2275 258 103 27 chr9 58452943 58453989 -65622183 - L1_Mur3 LINE L1 -744 5136 4011 9 1030 308 198 1 1 chr9 58454158 58454233 -65621939 - L1_Rod LINE L1 -2122 4018 3922 9 1030 619 198 0 0 chr9 58454234 58454335 -65621837 - B1_Mur2 SINE Alu 0 149 49 9 1030 295 323 95 16 chr9 58454547 58454673 -65621499 + ID_B1 SINE B4 81 216 -8 9 1030 284 298 60 0 chr9 58454911 58454995 -65621177 + MER5A DNA MER1_type 101 189 0 9 1030 232 309 134 42 chr9 58455181 58455323 -65620849 + B4 SINE B4 69 223 -69 9 1030 486 184 8 99 chr9 58455204 58455325 -65620847 + PB1D9 SINE Alu 11 120 0 9 1030 245 127 48 0 chr9 58455325 58455388 -65620784 + A-rich Low_complexity Low_complexity 1 66 0 9 1030 1138 272 91 56 chr9 58455790 58456010 -65620162 - MER31A LTR ERV1 -6 479 251 9 1030 831 93 0 0 chr9 58456010 58456128 -65620044 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 9 1030 712 157 80 29 chr9 58456130 58456268 -65619904 - B1_Mur3 SINE Alu 0 149 5 9 1030 1138 272 91 56 chr9 58456268 58456507 -65619665 - MER31A LTR ERV1 -235 250 5 9 1030 358 241 58 0 chr9 58456845 58456932 -65619240 + PB1D10 SINE Alu 2 93 -24 9 1030 258 217 112 112 chr9 58457341 58457372 -65618800 - YREP_Mm Unknown Unknown -1471 341 222 9 1030 729 191 57 0 chr9 58457372 58457513 -65618659 + B1_Mur2 SINE Alu 1 149 0 9 1030 258 217 112 112 chr9 58457513 58457528 -65618644 - YREP_Mm Unknown Unknown -1471 221 155 9 1030 671 254 64 101 chr9 58457594 58457772 -65618400 - B3 SINE B2 -5 211 41 9 1030 941 107 50 0 chr9 58457772 58457912 -65618260 - B1_Mus2 SINE Alu 0 147 1 9 1030 671 254 64 101 chr9 58457912 58457952 -65618220 - B3 SINE B2 -176 40 1 9 128 1220 69 62 11 chr9 58457984 58458161 -65618011 + B2_Mm2 SINE B2 7 192 -3 9 1031 26 30 0 0 chr9 58458183 58458216 -65617956 + AT_rich Low_complexity Low_complexity 1 33 0 9 1031 444 261 95 9 chr9 58458309 58458425 -65617747 + RSINE1 SINE B4 5 130 -35 9 1031 318 256 56 64 chr9 58458461 58458474 -65617698 + MT2B LTR ERVL 153 164 -437 9 1031 584 164 92 33 chr9 58458474 58458594 -65617578 + B1_Mur1 SINE Alu 1 127 -22 9 1031 203 138 39 87 chr9 58458637 58458740 -65617432 + CT-rich Low_complexity Low_complexity 3 100 0 9 1031 1091 82 7 0 chr9 58458744 58458891 -65617281 - B1_Mus1 SINE Alu 0 148 1 9 1031 257 289 138 22 chr9 58458997 58459135 -65617037 - MIRb SINE MIR -19 249 96 9 1031 545 232 49 7 chr9 58459314 58459457 -65616715 - B1_Mur1 SINE Alu 0 149 1 9 1031 468 260 71 107 chr9 58459902 58460070 -65616102 + RSINE1 SINE B4 3 164 -1 9 1031 690 274 122 0 chr9 58460506 58460736 -65615436 - MIR SINE MIR -1 261 4 9 1031 210 37 0 0 chr9 58462149 58462176 -65613996 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1031 185 327 25 119 chr9 58462213 58462304 -65613868 + MIRc SINE MIR 2 88 -180 9 1031 1484 43 32 0 chr9 58462304 58462490 -65613682 - B2_Mm2 SINE B2 -3 192 1 9 1031 185 327 25 119 chr9 58462490 58462516 -65613656 + MIRc SINE MIR 89 108 -160 9 1031 709 219 48 48 chr9 58462956 58463143 -65613029 + Lx8 LINE L1 7157 7343 -130 9 1031 270 83 0 0 chr9 58463293 58463329 -65612843 + B2_Mm2 SINE B2 2 37 -158 9 1031 646 129 42 25 chr9 58463434 58463553 -65612619 + B2_Mm2 SINE B2 9 129 -66 9 1031 416 253 121 61 chr9 58463616 58463814 -65612358 - B3 SINE B2 -6 210 1 9 1031 22 70 0 0 chr9 58463817 58463860 -65612312 + AT_rich Low_complexity Low_complexity 1 43 0 9 1031 698 165 62 35 chr9 58463909 58464053 -65612119 - B1_Mur3 SINE Alu 0 149 2 9 1031 186 43 0 0 chr9 58466368 58466391 -65609781 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 9 1031 216 0 0 0 chr9 58466994 58467018 -65609154 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1031 353 222 289 0 chr9 58471782 58471872 -65604300 + RSINE1 SINE B4 2 117 -48 9 1031 1519 37 27 0 chr9 58471953 58472140 -65604032 - B2_Mm1t SINE B2 0 193 2 9 1031 575 202 143 0 chr9 58472140 58472259 -65603913 + B1_Mur4 SINE Alu 15 150 0 9 1031 959 73 7 0 chr9 58472546 58472696 -65603476 + (TG)n Simple_repeat Simple_repeat 1 151 0 9 1031 563 235 29 50 chr9 58472715 58472854 -65603318 - B1_Mur2 SINE Alu -12 137 2 9 1031 211 356 87 0 chr9 58472854 58472958 -65603214 - MER5B DNA MER1_type -62 116 4 9 1031 195 246 89 76 chr9 58473133 58473212 -65602960 + L4 LINE RTE 803 882 -1147 9 1031 209 333 17 59 chr9 58473545 58473663 -65602509 - MIRb SINE MIR -109 159 47 9 1031 663 80 0 0 chr9 58473903 58473991 -65602181 - B2_Mm2 SINE B2 -66 129 42 9 1031 33 0 0 0 chr9 58474004 58474037 -65602135 + AT_rich Low_complexity Low_complexity 1 33 0 9 1031 795 182 8 0 chr9 58474060 58474186 -65601986 - B3 SINE B2 -86 130 4 9 1031 189 0 0 0 chr9 58474287 58474308 -65601864 + (C)n Simple_repeat Simple_repeat 1 21 0 9 1031 312 48 0 0 chr9 58474521 58474563 -65601609 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1031 285 89 0 0 chr9 58475042 58475087 -65601085 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 9 1031 366 371 62 6 chr9 58475820 58475996 -65600176 + MIR SINE MIR 2 187 -75 9 1031 1457 53 27 0 chr9 58476093 58476280 -65599892 - B2_Mm1t SINE B2 0 193 2 9 1031 187 373 98 18 chr9 58476510 58476622 -65599550 - MIR SINE MIR -68 140 20 9 1031 477 284 58 29 chr9 58477321 58477459 -65598713 + RSINE1 SINE B4 1 142 -23 9 1031 395 263 107 21 chr9 58477646 58477786 -65598386 + B4 SINE B4 6 157 -135 9 1031 994 222 58 68 chr9 58478810 58479105 -65597067 + B4A SINE B4 1 292 0 9 1031 221 344 37 37 chr9 58480018 58480154 -65596018 - MIR SINE MIR -105 157 22 9 1031 221 397 36 29 chr9 58480182 58480322 -65595850 + MIR3 SINE MIR 37 177 -31 9 1031 8795 76 19 4 chr9 58480333 58481574 -65594598 - ORR1A1-int LTR MaLR -533 1259 1 9 1031 1611 97 60 2 chr9 58481574 58481873 -65594299 - ORR1A1 LTR MaLR 0 378 39 9 1031 771 116 0 28 chr9 58481873 58482015 -65594157 - L1_Mur2 LINE L1 -522 5355 5218 9 1031 4541 181 61 127 chr9 58482007 58482314 -65593858 + L1_Mur1 LINE L1 3859 4161 -1725 9 1031 799 123 196 19 chr9 58482314 58482472 -65593700 + B2_Mm2 SINE B2 2 187 -8 9 1031 4541 181 61 127 chr9 58482472 58482903 -65593269 + L1_Mur1 LINE L1 4162 4588 -1298 9 1031 1356 80 0 11 chr9 58482903 58483092 -65593080 - B2_Mm2 SINE B2 -8 187 1 9 1031 4541 181 61 127 chr9 58483092 58483646 -65592526 + L1_Mur1 LINE L1 4589 5213 -673 9 1031 408 159 14 0 chr9 58483750 58483819 -65592353 - Lx4B LINE L1 -788 6270 6201 9 1031 1477 226 5 52 chr9 58483816 58484203 -65591969 - Lx9 LINE L1 -316 7328 6960 9 1031 180 195 71 24 chr9 58484738 58484780 -65591392 - MIRc SINE MIR -87 181 138 9 1031 3793 169 79 16 chr9 58485270 58486143 -65590029 - Lx9 LINE L1 -1 7643 6716 9 1031 4564 171 98 24 chr9 58486150 58487380 -65588792 - Lx9 LINE L1 -1716 5928 4575 9 1031 252 77 0 0 chr9 58487551 58487590 -65588582 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 9 1031 752 154 0 0 chr9 58487592 58487709 -65588463 - B1_Mus1 SINE Alu -9 139 23 9 1031 1165 133 16 16 chr9 58487908 58488092 -65588080 - B2_Mm2 SINE B2 -10 185 2 9 1031 775 250 60 11 chr9 58489050 58489232 -65586940 - B3A SINE B2 -6 192 2 9 1031 264 30 0 0 chr9 58489259 58489292 -65586880 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1031 868 291 43 18 chr9 58489303 58489579 -65586593 - B4A SINE B4 -9 283 1 9 1031 489 302 17 8 chr9 58490530 58490650 -65585522 - RSINE1 SINE B4 -22 143 23 9 1031 720 228 60 20 chr9 58495487 58495688 -65580484 + ID_B1 SINE B4 1 209 -15 9 1031 198 91 0 0 chr9 58497113 58497146 -65579026 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 9 1031 197 83 0 27 chr9 58500050 58500087 -65576085 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1031 313 291 0 0 chr9 58501432 58501511 -65574661 + ID4 SINE ID 5 83 0 2 1031 287 245 94 0 chr9 58501982 58502088 -65574084 + Tigger5 DNA MER2_type 2291 2406 0 3 1031 228 197 227 38 chr9 58502093 58502225 -65573947 - L1MD LINE L1 -2106 5889 5733 4 1031 213 333 36 54 chr9 58502248 58502359 -65573813 - PB1D10 SINE Alu 0 117 9 5 1031 224 389 0 0 chr9 58502536 58502608 -65573564 - RSINE1 SINE B4 -15 150 79 6 1031 355 237 45 13 chr9 58502688 58502777 -65573395 - RSINE1 SINE B4 -201 91 1 7 1031 385 243 81 0 chr9 58502787 58502898 -65573274 - L1M5 LINE L1 -697 5482 5363 8 1031 221 306 129 43 chr9 58502943 58503059 -65573113 + B4 SINE B4 1 126 -166 9 1031 458 188 69 0 chr9 58503078 58503179 -65572993 - ID_B1 SINE B4 -17 207 100 1 1031 242 212 116 43 chr9 58503118 58503187 -65572985 - PB1D7 SINE Alu -33 87 14 1 1031 335 60 20 0 chr9 58503371 58503421 -65572751 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1031 1004 129 91 23 chr9 58503944 58504119 -65572053 - B2_Mm2 SINE B2 -7 188 2 1 1031 327 300 26 26 chr9 58506632 58506745 -65569427 - MIRb SINE MIR -150 118 6 1 1031 246 321 90 21 chr9 58507069 58507257 -65568915 - Charlie1a DNA MER1_type -621 834 634 1 1031 271 279 58 11 chr9 58507835 58507922 -65568250 - B3A SINE B2 -26 172 82 1 1031 22 35 0 0 chr9 58508417 58508446 -65567726 + AT_rich Low_complexity Low_complexity 1 29 0 1 1031 1031 212 25 0 chr9 58508567 58508808 -65567364 + B4A SINE B4 2 248 -44 1 1031 613 194 14 27 chr9 58509988 58510136 -65566036 - B3A SINE B2 -52 146 1 1 1031 520 202 10 0 chr9 58510687 58510786 -65565386 + RSINE1 SINE B4 25 124 -41 2 1031 708 278 117 55 chr9 58511032 58511375 -65564797 - MTEb LTR MaLR -15 364 1 2 1031 701 220 116 23 chr9 58511616 58511788 -65564384 + B3A SINE B2 5 192 -6 2 1031 263 271 385 0 chr9 58511917 58512039 -65564133 - Lx9 LINE L1 -373 7271 7103 2 1031 294 235 196 0 chr9 58512327 58512429 -65563743 - Charlie4a DNA MER1_type -357 151 30 2 1031 213 121 0 0 chr9 58512580 58512613 -65563559 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 2 1031 1009 99 0 7 chr9 58512623 58512765 -65563407 - B1_Mur3 SINE Alu -8 141 1 2 1031 389 258 0 40 chr9 58512891 58513016 -65563156 - B3A SINE B2 -6 192 73 2 1031 735 194 35 7 chr9 58513133 58513278 -65562894 - B1_Mur1 SINE Alu 0 149 1 2 1031 1635 36 0 20 chr9 58514474 58514671 -65561501 - B2_Mm1a SINE B2 0 193 1 2 1031 620 153 18 0 chr9 58514721 58514832 -65561340 + PB1D9 SINE Alu 8 120 0 3 1031 421 219 157 9 chr9 58515270 58515385 -65560787 - RSINE1 SINE B4 -21 144 13 3 1031 225 0 0 0 chr9 58515521 58515546 -65560626 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1031 424 162 319 18 chr9 58515818 58515931 -65560241 + B1F SINE Alu 1 147 -2 3 1031 366 247 32 0 chr9 58516126 58516219 -65559953 - B1F1 SINE Alu -51 98 3 3 1031 285 261 0 0 chr9 58516163 58516228 -65559944 - B4A SINE B4 -149 143 79 3 1031 351 0 0 0 chr9 58517471 58517510 -65558662 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1031 1853 190 158 39 chr9 58518006 58518543 -65557629 + RMER1B Other Other 48 1061 -5 3 1031 464 281 14 7 chr9 58518901 58519041 -65557131 - MER58B DNA MER1_type -125 216 76 3 1031 601 323 39 17 chr9 58519068 58519298 -65556874 + B4 SINE B4 58 292 0 3 1031 286 226 16 0 chr9 58519563 58519625 -65556547 - L1MC5 LINE L1 -726 7235 7173 4 1031 558 242 80 31 chr9 58519978 58520140 -65556032 + ID_B1 SINE B4 54 223 -1 4 1031 1055 192 15 15 chr9 58520149 58520355 -65555817 - B3 SINE B2 -10 206 1 4 1031 1229 41 7 0 chr9 58521497 58521643 -65554529 + B1_Mus1 SINE Alu 2 148 0 4 1031 322 303 100 33 chr9 58521896 58522046 -65554126 + MLT1K LTR MaLR 4 163 -432 4 1031 547 307 87 29 chr9 58523703 58523911 -65552261 + B4A SINE B4 1 220 -72 4 1031 251 305 31 31 chr9 58523996 58524155 -65552017 + L1_Rod LINE L1 490 648 -6524 4 1031 385 289 6 23 chr9 58524339 58524516 -65551656 + (TGGG)n Simple_repeat Simple_repeat 1 174 0 4 1031 283 269 25 25 chr9 58524535 58524695 -65551477 + (TGGG)n Simple_repeat Simple_repeat 2 161 0 4 1031 892 272 50 61 chr9 58524709 58525234 -65550938 + L1_Mur3 LINE L1 1318 1836 -4044 4 1031 3937 169 155 38 chr9 58525234 58525611 -65550561 + RMER12 LTR ERVK 1 370 -952 4 1031 1153 48 14 0 chr9 58525611 58525757 -65550415 + B1_Mus1 SINE Alu 1 148 0 5 1031 3937 169 155 38 chr9 58525757 58526131 -65550041 + RMER12 LTR ERVK 371 765 -557 4 1031 207 88 0 0 chr9 58526131 58526165 -65550007 + (TCCA)n Simple_repeat Simple_repeat 2 35 0 5 1031 3937 169 155 38 chr9 58526165 58526436 -65549736 + RMER12 LTR ERVK 766 1144 -178 4 1031 621 221 52 52 chr9 58526705 58526877 -65549295 + RMER12 LTR ERVK 1145 1316 -6 4 1031 3077 279 45 52 chr9 58527065 58528302 -65547870 + L1_Mur3 LINE L1 2310 3540 -2340 4 1031 1233 102 16 36 chr9 58528302 58528495 -65547677 + B2_Mm2 SINE B2 2 190 -5 5 1031 3077 279 45 52 chr9 58528495 58528760 -65547412 + L1_Mur3 LINE L1 3541 3802 -2078 4 1031 677 71 26 6 chr9 58528777 58528882 -65547290 + B2_Mm2 SINE B2 76 191 -25 5 1031 852 238 83 0 chr9 58528901 58529094 -65547078 + B3 SINE B2 5 213 -3 5 1031 518 75 12 0 chr9 58529522 58529602 -65546570 + (TCTCC)n Simple_repeat Simple_repeat 3 83 0 5 1031 1416 87 16 0 chr9 58529675 58529860 -65546312 + B2_Mm2 SINE B2 3 190 -5 5 1031 290 267 124 31 chr9 58529872 58530065 -65546107 - L1ME1 LINE L1 -6 6173 5963 5 1031 222 37 0 0 chr9 58530533 58530560 -65545612 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 1031 4260 143 102 22 chr9 58530993 58531815 -65544357 - RMER19B LTR ERVK -14 888 1 5 1031 246 192 0 0 chr9 58532465 58532517 -65543655 - MTEa LTR MaLR -324 55 4 6 1031 1140 95 0 0 chr9 58532884 58533023 -65543149 + B1_Mus1 SINE Alu 1 139 -9 6 1031 187 31 62 0 chr9 58533023 58533055 -65543117 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 6 1031 4087 48 0 0 chr9 58533592 58534076 -65542096 - L1Md_T LINE L1 0 5883 5400 6 1031 6554 16 0 5 chr9 58534076 58534813 -65541359 + L1Md_T LINE L1 5850 6582 0 6 1031 297 233 88 11 chr9 58536133 58536224 -65539948 + B4A SINE B4 184 281 -11 6 1031 482 295 65 83 chr9 58536818 58537038 -65539134 + L1MC4a LINE L1 7012 7233 -649 6 1031 309 256 227 23 chr9 58537038 58537170 -65539002 + RSINE1 SINE B4 3 161 -4 6 1031 482 295 65 83 chr9 58537170 58537382 -65538790 + L1MC4a LINE L1 7234 7436 -446 6 1031 234 254 28 0 chr9 58537385 58537456 -65538716 + L1MC4a LINE L1 7612 7684 -311 6 1031 884 127 27 34 chr9 58537603 58537750 -65538422 + B1_Mur4 SINE Alu 3 148 -2 6 1031 201 220 0 33 chr9 58537750 58537811 -65538361 + A-rich Low_complexity Low_complexity 1 59 0 6 1031 544 172 20 10 chr9 58537862 58537962 -65538210 - MTE2b LTR MaLR -245 134 34 6 1031 1204 58 0 0 chr9 58538281 58538437 -65537735 + B2_Mm2 SINE B2 2 157 -38 7 1031 240 35 0 0 chr9 58538437 58538466 -65537706 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 7 1031 574 237 71 95 chr9 58538509 58538719 -65537453 - B3A SINE B2 0 216 12 7 1031 1597 42 5 0 chr9 58539609 58539799 -65536373 + B2_Mm1t SINE B2 1 191 -2 7 1031 540 283 48 11 chr9 58539928 58540114 -65536058 + B4 SINE B4 2 194 -98 7 1031 692 299 42 12 chr9 58540270 58540510 -65535662 + B4A SINE B4 2 248 -44 7 1031 21 0 0 0 chr9 58541362 58541383 -65534789 + AT_rich Low_complexity Low_complexity 1 21 0 7 1031 3058 134 114 33 chr9 58541925 58542231 -65533941 - RMER6C LTR ERVK 0 690 382 7 1031 186 143 0 0 chr9 58542231 58542266 -65533906 + (CACTG)n Simple_repeat Simple_repeat 2 36 0 7 1031 3058 134 114 33 chr9 58542266 58542597 -65533575 - RMER6C LTR ERVK -309 381 1 7 1031 303 248 101 37 chr9 58542631 58542791 -65533381 + L1M5 LINE L1 5404 5576 -586 7 1031 333 125 0 0 chr9 58542983 58543039 -65533133 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1031 326 268 68 154 chr9 58543105 58543339 -65532833 - B4 SINE B4 0 292 79 8 1031 1012 194 56 5 chr9 58543342 58543539 -65532633 - B3 SINE B2 -9 207 1 8 1031 300 175 0 16 chr9 58543921 58543985 -65532187 - RLTR19B LTR ERVK 0 715 653 8 1031 4288 100 18 13 chr9 58544005 58544415 -65531757 - RLTR19B LTR ERVK -41 674 258 8 1031 3567 20 0 0 chr9 58544415 58544811 -65531361 + MTA_Mm LTR MaLR 1 396 0 8 1031 9263 34 6 1 chr9 58544811 58545903 -65530269 + MTA_Mm-int LTR MaLR 1 1098 0 8 1031 3567 20 0 0 chr9 58545903 58546299 -65529873 + MTA_Mm LTR MaLR 1 396 0 8 1031 4288 100 18 13 chr9 58546299 58546557 -65529615 - RLTR19B LTR ERVK -458 257 3 8 1031 362 302 46 8 chr9 58546640 58546770 -65529402 + L1M5 LINE L1 5612 5746 -427 7 1031 241 225 27 53 chr9 58547196 58547271 -65528901 + L1ME2 LINE L1 5588 5660 -519 8 1031 316 196 47 125 chr9 58547284 58547412 -65528760 + MT2B LTR ERVL 130 247 -354 8 1031 730 136 27 48 chr9 58547323 58547470 -65528702 + B1_Mur4 SINE Alu 7 150 0 8 1031 595 252 96 0 chr9 58547473 58547671 -65528501 + L1ME2 LINE L1 5689 5905 -259 8 1031 407 247 0 0 chr9 58548996 58549081 -65527091 + PB1D10 SINE Alu 33 117 0 8 1031 1534 58 16 0 chr9 58549085 58549275 -65526897 + B2_Mm2 SINE B2 2 194 -1 8 1031 219 69 0 0 chr9 58549285 58549314 -65526858 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 9 1031 1216 198 5 0 chr9 58549893 58550105 -65526067 - B3 SINE B2 -3 213 1 9 1031 422 300 50 0 chr9 58550550 58550741 -65525431 + L1MB3 LINE L1 5477 5681 -502 9 1031 1125 246 66 100 chr9 58551079 58551626 -65524546 + L1MB3 LINE L1 5621 6154 -26 9 1031 345 173 0 2 chr9 58552522 58552589 -65523583 + L1MA9 LINE L1 5216 5284 -859 9 1031 543 190 90 0 chr9 58552641 58552778 -65523394 - B1_Mur4 SINE Alu 0 150 2 9 1031 229 214 18 0 chr9 58552823 58552879 -65523293 + L1M3 LINE L1 3888 3944 -2196 9 1031 450 83 0 0 chr9 58553486 58553558 -65522614 + (TC)n Simple_repeat Simple_repeat 1 72 0 9 1031 243 0 0 0 chr9 58553558 58553585 -65522587 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1031 505 297 107 7 chr9 58553588 58553737 -65522435 - B3A SINE B2 -34 164 1 9 1031 910 283 90 25 chr9 58553774 58554176 -65521996 + L1MA9 LINE L1 5484 5911 -401 9 1031 339 293 34 8 chr9 58554174 58554291 -65521881 + Lx9 LINE L1 5855 5974 -1670 9 1031 798 205 134 35 chr9 58554568 58554770 -65521402 + Lx8 LINE L1 6460 6681 -792 1 1031 277 105 0 0 chr9 58554838 58554888 -65521284 - MT2A LTR ERVL -2 565 489 1 1031 575 164 99 0 chr9 58554901 58555022 -65521150 + B1_Mus1 SINE Alu 11 143 -5 1 1031 265 262 8 8 chr9 58555023 58555150 -65521022 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 1031 926 188 338 37 chr9 58555176 58555475 -65520697 - MT2A LTR ERVL -141 392 4 1 1031 670 291 82 19 chr9 58555659 58555915 -65520257 + Lx8 LINE L1 7069 7340 -133 1 1031 934 230 0 10 chr9 58556081 58556274 -65519898 - B3 SINE B2 -13 203 13 1 1031 287 302 35 0 chr9 58556289 58556375 -65519797 + B1F SINE Alu 1 89 -60 1 1031 579 261 59 25 chr9 58556620 58556854 -65519318 - B4A SINE B4 -52 240 1 1 1031 205 70 0 65 chr9 58557411 58557457 -65518715 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 1 1031 770 123 144 15 chr9 58557457 58557589 -65518583 - B1_Mur4 SINE Alu -1 149 1 1 1031 521 266 30 11 chr9 58558113 58558326 -65517846 + L1M5 LINE L1 4443 4659 -1481 1 1031 222 37 0 0 chr9 58559252 58559279 -65516893 + (TCTCCC)n Simple_repeat Simple_repeat 3 29 0 1 1031 879 118 0 0 chr9 58560059 58560194 -65515978 + (CATATA)n Simple_repeat Simple_repeat 4 138 0 1 1031 583 279 77 31 chr9 58560569 58560765 -65515407 - B3 SINE B2 -10 206 2 1 1031 578 194 107 15 chr9 58560845 58560976 -65515196 - B1_Mur4 SINE Alu -1 149 7 1 1031 601 299 33 38 chr9 58561007 58561191 -65514981 - B3A SINE B2 -14 184 2 1 1031 204 40 0 0 chr9 58561263 58561288 -65514884 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1031 4699 139 44 31 chr9 58561390 58561648 -65514524 + RMER19B LTR ERVK 3 265 -637 1 1031 1404 56 73 0 chr9 58561648 58561667 -65514505 - B2_Mm1a SINE B2 0 193 175 1 1031 228 67 0 0 chr9 58561667 58561697 -65514475 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1031 1404 56 73 0 chr9 58561697 58561856 -65514316 - B2_Mm1a SINE B2 -19 174 3 1 1031 4699 139 44 31 chr9 58561856 58562486 -65513686 + RMER19B LTR ERVK 266 902 0 1 1031 579 312 93 44 chr9 58562585 58563081 -65513091 + L2 LINE L2 2356 2875 -544 1 1031 275 327 116 32 chr9 58563545 58563700 -65512472 + L1MEf LINE L1 1531 1698 -4544 1 1031 436 250 120 0 chr9 58563751 58563859 -65512313 - RSINE1 SINE B4 -36 129 9 1 1031 293 167 30 0 chr9 58564199 58564265 -65511907 + B1_Mur3 SINE Alu 81 148 -1 1 1031 358 270 11 63 chr9 58564302 58564476 -65511696 - Lx7 LINE L1 -8 7688 7524 1 1031 2185 143 55 3 chr9 58564479 58564858 -65511314 - MTC LTR MaLR 0 421 23 1 1031 267 74 0 69 chr9 58564862 58564920 -65511252 - MTC-int LTR MaLR -1 1257 1204 1 1031 520 131 168 0 chr9 58564905 58565012 -65511160 - MTC-int LTR MaLR -1131 127 3 1 1031 2041 152 81 5 chr9 58565016 58565400 -65510772 - MTC LTR MaLR -8 413 1 1 1031 1799 234 14 21 chr9 58565427 58565854 -65510318 - Lx7 LINE L1 -346 7350 6927 1 1031 276 30 0 0 chr9 58565905 58565938 -65510234 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1031 420 233 146 11 chr9 58565976 58566154 -65510018 + L1MEf LINE L1 2414 2615 -3531 1 1031 210 91 0 0 chr9 58566210 58566243 -65509929 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1031 267 241 0 54 chr9 58566481 58566573 -65509599 + L1M2 LINE L1 4969 5055 -1088 1 1031 1369 85 17 0 chr9 58566582 58566759 -65509413 + B2_Mm2 SINE B2 1 180 -15 1 1031 242 266 12 81 chr9 58566760 58566846 -65509326 + B4A SINE B4 95 174 -118 1 1031 288 0 0 0 chr9 58566874 58566906 -65509266 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1031 360 0 0 0 chr9 58566907 58566947 -65509225 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1031 875 286 102 18 chr9 58566949 58567533 -65508639 + L1M2 LINE L1 5076 5723 -433 1 1031 333 219 113 8 chr9 58567711 58567835 -65508337 + L1MA6 LINE L1 6126 6262 -38 1 1031 246 295 96 6 chr9 58567860 58568017 -65508155 + L1MEf LINE L1 2779 2949 -3197 1 1031 325 280 152 32 chr9 58568112 58568458 -65507714 + L1MEf LINE L1 3953 4343 -1803 1 1031 398 274 329 4 chr9 58568459 58568729 -65507443 + ORR1E LTR MaLR 1 359 0 1 1031 708 265 69 30 chr9 58568936 58569313 -65506859 + MLT1D LTR MaLR 25 504 -1 1 1031 472 233 82 51 chr9 58569355 58569513 -65506659 + RSINE1 SINE B4 3 165 0 1 1031 24 32 0 0 chr9 58569531 58569562 -65506610 + AT_rich Low_complexity Low_complexity 1 31 0 1 1031 805 247 10 40 chr9 58569662 58569860 -65506312 - B3A SINE B2 -6 192 1 1 1031 216 257 68 0 chr9 58569963 58570037 -65506135 - L2a LINE L2 -5 3421 3343 1 1031 716 313 52 107 chr9 58570868 58571337 -65504835 - Tigger2b DNA MER2_type -53 673 245 1 1031 614 247 123 0 chr9 58571337 58571499 -65504673 - B3A SINE B2 -16 182 1 1 1031 716 313 52 107 chr9 58571499 58571665 -65504507 - Tigger2b DNA MER2_type -482 244 73 1 1031 1132 289 40 11 chr9 58571740 58572087 -65504085 + ORR1D2 LTR MaLR 9 365 -5 1 1031 378 290 89 19 chr9 58572392 58572550 -65503622 + MER97c DNA MER1_type? 554 722 -368 1 1031 507 211 0 21 chr9 58572558 58572655 -65503517 - B1F SINE Alu -51 98 4 1 1031 217 283 235 17 chr9 58572687 58572802 -65503370 + RSINE1 SINE B4 2 141 -24 1 1031 573 64 0 0 chr9 58572811 58572889 -65503283 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1031 388 259 37 15 chr9 58573156 58573324 -65502848 + MER97a DNA MER1_type? 776 1090 0 1 1031 282 29 0 0 chr9 58573491 58573526 -65502646 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1031 259 224 17 0 chr9 58573627 58573685 -65502487 - B1F SINE Alu -64 85 27 1 1031 1885 107 31 104 chr9 58574114 58574468 -65501704 + ORR1A4 LTR MaLR 2 329 0 1 1031 670 154 76 7 chr9 58575198 58575342 -65500830 + Lx LINE L1 6490 6643 -11 1 1031 567 304 128 31 chr9 58575594 58576008 -65500164 - L1_Mur3 LINE L1 -1247 4633 4180 1 1031 478 266 10 83 chr9 58576119 58576324 -65499848 + B4A SINE B4 84 273 -19 1 1031 375 60 0 0 chr9 58576334 58576384 -65499788 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1031 24 77 0 0 chr9 58576950 58577002 -65499170 + AT_rich Low_complexity Low_complexity 1 52 0 1 1031 337 328 52 47 chr9 58577725 58577917 -65498255 + B4A SINE B4 41 233 -59 1 1031 411 264 26 35 chr9 58578023 58578137 -65498035 + PB1D10 SINE Alu 4 116 -1 1 1031 3084 58 18 0 chr9 58578218 58578611 -65497561 - MTB LTR MaLR 0 400 1 1 1031 204 279 0 0 chr9 58579519 58579562 -65496610 + MIRb SINE MIR 41 83 -185 1 1031 1392 262 92 7 chr9 58579649 58580072 -65496100 + RCHARR1 DNA MER1_type 39 497 -477 1 1031 524 167 0 11 chr9 58580074 58580165 -65496007 + B1_Mur2 SINE Alu 40 129 -20 1 1031 1580 198 52 17 chr9 58580170 58580515 -65495657 + ORR1D1 LTR MaLR 4 360 -14 1 1031 957 200 42 0 chr9 58580568 58580758 -65495414 + B3 SINE B2 2 199 -17 1 1031 740 208 6 56 chr9 58580776 58580954 -65495218 + RCHARR1 DNA MER1_type 479 647 -327 1 1031 520 219 8 8 chr9 58580959 58581083 -65495089 + RCHARR1 DNA MER1_type 851 974 0 1 1031 308 230 59 50 chr9 58581252 58581371 -65494801 - MLT1A1 LTR MaLR -5 403 284 1 1031 1102 226 151 115 chr9 58581915 58582280 -65493892 - MTE2b LTR MaLR 0 379 2 1 1031 2171 82 130 22 chr9 58582494 58582855 -65493317 + L1_Mus3 LINE L1 6158 6557 -81 1 1031 1470 39 11 6 chr9 58582894 58583073 -65493099 - B2_Mm2 SINE B2 -14 181 2 1 1031 281 238 86 0 chr9 58583532 58583637 -65492535 + PB1D10 SINE Alu 2 115 -2 1 1031 368 317 75 28 chr9 58584065 58584318 -65491854 + L1MEc LINE L1 467 731 -5669 1 1031 969 162 279 26 chr9 58584358 58584630 -65491542 + ORR1B1 LTR MaLR 52 392 -2 1 1031 324 284 0 0 chr9 58584651 58584746 -65491426 + L1MEc LINE L1 752 846 -5554 1 1031 259 294 89 20 chr9 58584908 58585054 -65491118 + MIRb SINE MIR 26 181 -87 1 1031 690 196 65 0 chr9 58585078 58585216 -65490956 + B1_Mur1 SINE Alu 3 149 0 1 1031 266 299 33 41 chr9 58585836 58585958 -65490214 + MER5A1 DNA MER1_type 9 129 -37 1 1031 459 0 0 0 chr9 58586208 58586259 -65489913 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1031 869 18 0 0 chr9 58586262 58586372 -65489800 - B1_Mm SINE Alu -7 140 31 1 1031 276 132 71 106 chr9 58586298 58586383 -65489789 - RLTR25B LTR ERVK -519 509 428 1 1031 257 317 12 0 chr9 58588583 58588665 -65487507 + ID4_ SINE ID 1 83 0 1 1031 206 348 0 0 chr9 58588922 58588991 -65487181 + L2a LINE L2 3358 3426 0 1 1032 285 51 0 0 chr9 58589506 58589545 -65486627 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1032 192 342 68 19 chr9 58590004 58590165 -65486007 - MIRc SINE MIR -32 236 68 1 1032 398 280 28 0 chr9 58590363 58590470 -65485702 - PB1D9 SINE Alu -10 110 1 1 1032 1018 157 43 5 chr9 58590591 58590777 -65485395 + B2_Mm2 SINE B2 3 195 0 1 1032 340 250 0 0 chr9 58591355 58591431 -65484741 + MIRc SINE MIR 44 119 -149 1 1032 607 241 0 72 chr9 58592196 58592348 -65483824 - B1_Mur2 SINE Alu -7 142 2 1 1032 429 242 121 0 chr9 58592572 58592696 -65483476 - ID_B1 SINE B4 0 224 86 1 1032 251 222 27 27 chr9 58592819 58592893 -65483279 - ID4_ SINE ID -8 75 2 1 1032 353 249 216 10 chr9 58593407 58593601 -65482571 + LTR16C LTR ERVL 235 468 -21 1 1032 257 78 0 56 chr9 58593843 58593856 -65482316 + (A)n Simple_repeat Simple_repeat 1 11 0 1 1032 1215 35 14 0 chr9 58593856 58594000 -65482172 + B1_Mm SINE Alu 2 147 0 1 1032 257 78 0 56 chr9 58594000 58594040 -65482132 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1032 261 378 14 36 chr9 58594073 58594213 -65481959 - RMER15 LTR ERVL -92 483 347 1 1032 871 241 20 25 chr9 58594665 58594869 -65481303 + ID_B1 SINE B4 22 224 0 1 1032 734 120 8 0 chr9 58594869 58594994 -65481178 + (GGAA)n Simple_repeat Simple_repeat 1 126 0 1 1032 23 33 0 0 chr9 58596360 58596390 -65479782 + AT_rich Low_complexity Low_complexity 1 30 0 1 1032 194 0 0 37 chr9 58596819 58596846 -65479326 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1032 429 325 95 24 chr9 58596967 58597178 -65478994 - MER82 DNA MER2_type -424 229 4 1 1032 324 295 9 26 chr9 58597240 58597355 -65478817 + B4 SINE B4 1 113 -179 1 1032 320 290 10 39 chr9 58597402 58597506 -65478666 + B4A SINE B4 1 101 -191 1 1032 561 99 0 0 chr9 58597508 58597589 -65478583 + (CAA)n Simple_repeat Simple_repeat 1 81 0 1 1032 702 244 59 12 chr9 58597621 58597791 -65478381 + B4 SINE B4 109 286 -6 1 1032 543 31 0 0 chr9 58597796 58597861 -65478311 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1032 490 261 138 9 chr9 58597900 58598117 -65478055 + MER2 DNA MER2_type 101 345 0 1 1032 207 307 0 0 chr9 58598327 58598415 -65477757 + T-rich Low_complexity Low_complexity 1 88 0 2 1032 465 264 18 0 chr9 58598883 58598993 -65477179 + ID_B1 SINE B4 3 114 -110 2 1032 2953 92 5 21 chr9 58599232 58599663 -65476509 - L1_Mus3 LINE L1 -22 6616 6193 2 1032 1594 153 75 118 chr9 58599769 58600168 -65476004 + ORR1C2 LTR MaLR 1 382 -2 2 1032 250 87 43 0 chr9 58600256 58600302 -65475870 + (CCCCCA)n Simple_repeat Simple_repeat 5 52 0 2 1032 448 241 28 0 chr9 58600677 58600785 -65475387 - Lx8 LINE L1 -360 7113 7003 2 1032 207 0 0 0 chr9 58600865 58600888 -65475284 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1032 912 277 28 14 chr9 58600890 58601172 -65475000 - B4A SINE B4 -6 286 1 2 1032 1573 190 80 15 chr9 58602192 58602579 -65473593 - MTD LTR MaLR -16 403 1 2 1032 204 333 0 17 chr9 58602686 58602744 -65473428 - L2c LINE L2 -1 3386 3330 2 1032 444 308 89 28 chr9 58603468 58603682 -65472490 - MIR SINE MIR -3 259 33 2 1032 610 266 94 42 chr9 58603735 58603927 -65472245 + B4 SINE B4 1 202 -90 2 1032 267 103 0 0 chr9 58603997 58604036 -65472136 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1032 199 259 0 0 chr9 58604237 58604291 -65471881 - L2c LINE L2 -587 2832 2779 2 1032 302 223 14 14 chr9 58604717 58604797 -65471375 - PB1D10 SINE Alu -31 89 2 2 1032 230 316 26 0 chr9 58604805 58604881 -65471291 + MER20B DNA MER1_type 65 142 -641 2 1032 183 42 0 0 chr9 58605046 58605070 -65471102 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1032 188 32 97 0 chr9 58605072 58605103 -65471069 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2 1032 254 302 0 48 chr9 58605105 58605272 -65470900 + (TG)n Simple_repeat Simple_repeat 1 159 0 2 1032 210 265 35 69 chr9 58605355 58605529 -65470643 + (TATATG)n Simple_repeat Simple_repeat 4 171 0 2 1032 2027 164 78 25 chr9 58605695 58606094 -65470078 - MTC LTR MaLR -1 420 1 2 1032 201 39 0 0 chr9 58606201 58606227 -65469945 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 2 1032 519 280 16 23 chr9 58608044 58608172 -65468000 - RSINE1 SINE B4 -10 155 29 2 1032 272 309 72 30 chr9 58608326 58608542 -65467630 + MLT1L LTR MaLR 357 602 -8 2 1032 583 282 43 6 chr9 58608751 58608936 -65467236 - L1MB2 LINE L1 -1 6188 6004 2 1032 408 172 172 0 chr9 58609026 58609113 -65467059 + B1_Mur4 SINE Alu 42 143 -7 2 1032 723 215 0 4 chr9 58609116 58609359 -65466813 + GA-rich Low_complexity Low_complexity 1 242 0 2 1032 722 152 28 94 chr9 58609382 58609563 -65466609 - MTEa LTR MaLR 0 379 211 2 1032 1209 239 15 8 chr9 58609541 58609806 -65466366 - MTEb LTR MaLR -93 286 20 2 1032 207 167 0 0 chr9 58610021 58610057 -65466115 + G-rich Low_complexity Low_complexity 6 41 0 2 1032 195 100 0 0 chr9 58610977 58611007 -65465165 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1032 1128 191 9 5 chr9 58611182 58611392 -65464780 + B3 SINE B2 5 215 -1 2 1032 345 296 183 27 chr9 58611685 58611942 -65464230 - MT2A LTR ERVL 0 533 237 2 1032 1069 168 64 0 chr9 58611956 58612159 -65464013 + B3 SINE B2 1 216 0 2 1032 340 349 0 36 chr9 58612489 58612626 -65463546 + ERVL-E-int LTR ERVL 1151 1282 -3714 2 1032 437 303 41 45 chr9 58613101 58613322 -65462850 + ERVL-E-int LTR ERVL 1789 2008 -3659 2 1032 932 192 119 0 chr9 58613561 58613754 -65462418 - B3 SINE B2 0 216 1 2 1032 270 291 81 80 chr9 58613994 58614265 -65461907 + ERVL-E-int LTR ERVL 2820 3102 -2659 2 1032 266 350 18 6 chr9 58614537 58614701 -65461471 + ERVL-E-int LTR ERVL 3425 3590 -2171 2 1032 764 136 25 0 chr9 58615255 58615417 -65460755 + (TG)n Simple_repeat Simple_repeat 2 167 0 2 1032 491 271 273 15 chr9 58615693 58616019 -65460153 - L1M4 LINE L1 -374 5804 5395 2 1032 370 289 110 117 chr9 58616157 58616466 -65459706 + MLT1A0 LTR MaLR 21 327 -38 2 1032 231 257 64 51 chr9 58616507 58616585 -65459587 + ID_B1 SINE B4 144 222 -2 2 1032 1212 198 166 27 chr9 58616588 58616916 -65459256 + MTD LTR MaLR 1 370 -49 2 1032 411 73 0 0 chr9 58616916 58616971 -65459201 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1032 1212 198 166 27 chr9 58616971 58617010 -65459162 + MTD LTR MaLR 371 418 -1 2 1032 582 244 76 23 chr9 58617015 58617187 -65458985 + B4A SINE B4 5 185 -107 2 1032 338 207 219 0 chr9 58617998 58618080 -65458092 + B4A SINE B4 1 100 -192 2 1032 316 300 0 0 chr9 58618227 58618297 -65457875 + RSINE1 SINE B4 64 133 -32 2 1032 207 0 0 0 chr9 58618308 58618331 -65457841 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 2 1032 209 301 99 35 chr9 58619133 58619274 -65456898 + MIRc SINE MIR 2 151 -117 2 1032 1410 66 22 0 chr9 58619369 58619551 -65456621 - B2_Mm2 SINE B2 -5 190 5 2 1032 1473 49 11 21 chr9 58619565 58619752 -65456420 - B2_Mm2 SINE B2 -10 185 1 2 1032 382 236 189 0 chr9 58619998 58620146 -65456026 - L1ME3A LINE L1 -246 5927 5752 2 1032 356 293 49 0 chr9 58620239 58620362 -65455810 - L1ME3A LINE L1 -638 5602 5474 2 1032 465 189 0 0 chr9 58620499 58620589 -65455583 + Lx7 LINE L1 456 545 -7183 2 1032 8354 210 48 23 chr9 58620590 58621161 -65455011 + Lx7 LINE L1 5590 6170 -1526 2 1032 423 0 0 0 chr9 58621161 58621208 -65454964 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1032 8354 210 48 23 chr9 58621208 58622573 -65453599 + Lx7 LINE L1 6171 7573 -123 2 1032 732 214 0 27 chr9 58622580 58622729 -65453443 - B1_Mur4 SINE Alu -2 148 4 2 1032 358 125 182 0 chr9 58622736 58622824 -65453348 + Lx7 LINE L1 7565 7668 -28 2 1032 242 250 0 15 chr9 58623189 58623254 -65452918 - L1ME3A LINE L1 -1334 4812 4749 2 1032 749 127 388 13 chr9 58623296 58623448 -65452724 - B3 SINE B2 -7 209 1 2 1032 236 311 79 39 chr9 58623459 58623496 -65452676 - L1ME3A LINE L1 -1402 4744 4708 2 1032 268 288 24 48 chr9 58623496 58623580 -65452592 - ID4 SINE ID 0 83 2 2 1032 236 311 79 39 chr9 58623580 58623796 -65452376 - L1ME3A LINE L1 -1439 4707 4482 2 1032 1627 211 149 3 chr9 58624266 58624628 -65451544 + MTD LTR MaLR 5 419 0 2 1032 711 0 0 0 chr9 58624996 58625075 -65451097 + (TTCTC)n Simple_repeat Simple_repeat 4 82 0 2 1032 326 271 153 53 chr9 58625085 58625274 -65450898 - B4A SINE B4 0 224 15 2 1032 279 0 0 0 chr9 58625519 58625550 -65450622 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1032 511 320 13 13 chr9 58625790 58625945 -65450227 + ID_B1 SINE B4 58 212 -12 2 1032 468 51 0 0 chr9 58625945 58626004 -65450168 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2 1032 3171 8 5 47 chr9 58626183 58626566 -65449606 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1032 987 86 159 0 chr9 58626566 58626729 -65449443 + IAPEz-int LTR ERVK 8 196 -6285 2 1032 53350 27 12 3 chr9 58626700 58633109 -65443063 + IAPEz-int LTR ERVK 67 6481 0 2 1032 3171 8 5 47 chr9 58633109 58633492 -65442680 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1032 827 266 80 46 chr9 58634307 58634544 -65441628 - B4A SINE B4 -24 268 24 2 1032 340 339 85 0 chr9 58634703 58634833 -65441339 + L1MB7 LINE L1 4545 4685 -1461 2 1032 416 324 84 40 chr9 58634930 58635155 -65441017 + B4A SINE B4 2 236 -56 2 1032 333 270 44 44 chr9 58635280 58635485 -65440687 + L1MB7 LINE L1 4981 5185 -961 2 1032 2174 176 22 3 chr9 58635600 58635971 -65440201 + ORR1C1 LTR MaLR 1 378 0 2 1032 773 249 15 7 chr9 58636265 58636428 -65439744 + B3A SINE B2 1 151 -47 2 1032 204 125 0 0 chr9 58636428 58636460 -65439712 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1032 554 263 36 82 chr9 58636460 58636491 -65439681 + B2_Mm2 SINE B2 150 186 -9 2 1032 397 200 188 0 chr9 58636703 58636788 -65439384 + B3 SINE B2 116 216 0 2 1032 495 0 0 0 chr9 58636956 58637011 -65439161 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 2 1032 989 78 0 43 chr9 58637165 58637352 -65438820 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 1032 736 299 25 10 chr9 58637379 58637582 -65438590 - B4 SINE B4 -30 262 57 2 1032 521 249 68 51 chr9 58637755 58638051 -65438121 - L1MC5 LINE L1 -30 7931 7631 2 1032 1479 281 90 47 chr9 58638114 58638617 -65437555 + Zaphod DNA Tip100 166 700 -3331 2 1032 964 224 142 52 chr9 58638617 58638885 -65437287 - B4A SINE B4 0 292 1 2 1032 1479 281 90 47 chr9 58638885 58639048 -65437124 + Zaphod DNA Tip100 701 861 -3170 2 1032 835 261 138 0 chr9 58639151 58639484 -65436688 + L1MB7 LINE L1 5417 5795 -389 2 1032 301 329 0 12 chr9 58639493 58639576 -65436596 + MER21B LTR ERV1 17 98 -765 2 1032 459 320 208 42 chr9 58639709 58639993 -65436179 - MER21B LTR ERV1 -235 628 298 2 1032 1770 229 53 3 chr9 58640143 58640520 -65435652 - MTD LTR MaLR -17 402 7 2 1032 383 279 28 7 chr9 58640538 58640679 -65435493 + L1MB7 LINE L1 6039 6182 -2 2 1032 1507 218 23 90 chr9 58641714 58642113 -65434059 + MTE2a LTR MaLR 1 372 -7 2 1032 390 244 129 64 chr9 58643210 58643381 -65432791 - MIRb SINE MIR -11 257 76 2 1032 756 144 30 0 chr9 58643413 58643545 -65432627 + MT2A LTR ERVL 3 138 -395 2 1032 1409 75 35 0 chr9 58643545 58643745 -65432427 + Lx2 LINE L1 6438 6644 -353 2 1032 1422 104 5 5 chr9 58643745 58643957 -65432215 + Lx2 LINE L1 6775 6986 -11 2 1032 1499 226 145 3 chr9 58643969 58644328 -65431844 + MT2A LTR ERVL 122 531 -2 2 1032 333 0 0 0 chr9 58644449 58644486 -65431686 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1032 281 316 0 12 chr9 58644894 58644974 -65431198 - ID4 SINE ID -4 79 1 2 1032 398 233 13 0 chr9 58644983 58645067 -65431105 - PB1D10 SINE Alu 0 127 34 2 1032 228 35 0 0 chr9 58645707 58645736 -65430436 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1032 278 309 10 21 chr9 58647970 58648066 -65428106 + CT-rich Low_complexity Low_complexity 40 134 0 2 1032 216 0 0 0 chr9 58648296 58648320 -65427852 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1032 1377 61 6 0 chr9 58648323 58648503 -65427669 - L1_Mus2 LINE L1 -1 6565 6385 2 1032 2507 49 3 27 chr9 58648503 58648838 -65427334 + L1_Mus2 LINE L1 6059 6385 -181 2 1032 431 309 59 54 chr9 58648869 58649091 -65427081 + MLT1K LTR MaLR 152 374 -221 2 1032 297 0 0 0 chr9 58649100 58649133 -65427039 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 2 1032 231 103 0 0 chr9 58649134 58649173 -65426999 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1032 184 283 197 14 chr9 58649274 58649421 -65426751 + L3 LINE CR1 4286 4459 -30 2 1032 295 295 119 51 chr9 58649405 58649523 -65426649 - MIRb SINE MIR -25 243 118 2 1032 323 226 50 117 chr9 58649923 58650043 -65426129 - Charlie4z DNA MER1_type -41 126 15 2 1032 201 271 42 0 chr9 58651478 58651526 -65424646 - L2a LINE L2 0 3426 3377 2 1032 218 192 19 0 chr9 58651981 58652033 -65424139 + CT-rich Low_complexity Low_complexity 2 54 0 2 1032 1094 209 18 22 chr9 58653081 58653306 -65422866 - ID_B1 SINE B4 0 224 1 2 1032 230 338 30 15 chr9 58655535 58655670 -65420502 - LTR88b LTR Gypsy? -17 820 684 2 1032 292 200 129 0 chr9 58655967 58656037 -65420135 - MLT1D LTR MaLR -7 498 420 2 1032 506 239 57 78 chr9 58656042 58656183 -65419989 + B1F SINE Alu 12 149 0 2 1032 524 203 93 79 chr9 58656188 58656327 -65419845 + B3A SINE B2 2 142 -56 3 1032 587 67 11 0 chr9 58656330 58656419 -65419753 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 1032 1070 261 136 50 chr9 58656559 58657043 -65419129 + Lx8 LINE L1 6131 6656 -817 3 1032 830 198 33 17 chr9 58657042 58657222 -65418950 + Lx8 LINE L1 7056 7238 -235 3 1032 381 86 0 0 chr9 58657284 58657342 -65418830 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1032 267 212 35 12 chr9 58657364 58657450 -65418722 + Lx8 LINE L1 7383 7470 -3 3 1032 442 277 118 66 chr9 58657476 58657704 -65418468 - MLT1D LTR MaLR -57 448 209 2 1032 347 289 41 0 chr9 58657777 58657874 -65418298 - MLT1D LTR MaLR -401 104 4 2 1032 992 262 55 11 chr9 58658536 58658735 -65417437 + B4 SINE B4 1 198 -94 3 1032 441 0 0 0 chr9 58658735 58658784 -65417388 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1032 992 262 55 11 chr9 58658784 58658858 -65417314 + B4 SINE B4 199 285 -7 3 1032 303 192 0 0 chr9 58658868 58658946 -65417226 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1032 249 33 0 0 chr9 58658974 58659004 -65417168 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1032 450 0 0 0 chr9 58659004 58659053 -65417119 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1032 366 349 91 22 chr9 58659200 58659519 -65416653 - L2 LINE L2 -531 2888 2548 3 1032 468 0 0 0 chr9 58659677 58659729 -65416443 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1032 342 0 0 0 chr9 58659729 58659766 -65416406 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1032 1049 61 69 0 chr9 58659791 58659922 -65416250 + B1_Mus1 SINE Alu 2 141 -7 3 1032 414 0 0 0 chr9 58659933 58659979 -65416193 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 1032 717 278 26 73 chr9 58660592 58660708 -65415464 + ID_B1 SINE B4 1 109 -115 3 1032 594 0 0 0 chr9 58660708 58660774 -65415398 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1032 717 278 26 73 chr9 58660774 58660890 -65415282 + ID_B1 SINE B4 110 222 -2 3 1032 843 234 112 0 chr9 58660897 58661085 -65415087 + B3 SINE B2 1 209 -7 3 1032 871 277 112 23 chr9 58661465 58661911 -65414261 - MER67A LTR ERV1 -5 538 2 3 1032 559 305 0 6 chr9 58662457 58662625 -65413547 + MIRb SINE MIR 94 260 -8 3 1032 271 311 0 120 chr9 58662952 58663069 -65413103 + B1F SINE Alu 19 121 -28 3 1032 246 261 0 42 chr9 58663069 58663141 -65413031 + GA-rich Low_complexity Low_complexity 3 71 0 3 1032 317 229 71 30 chr9 58663334 58663433 -65412739 - ORR1E LTR MaLR -248 111 9 3 1032 480 18 0 0 chr9 58665495 58665552 -65410620 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1032 395 274 50 91 chr9 58667476 58667697 -65408475 - Charlie18a DNA MER1_type -4 338 127 3 1032 261 0 0 0 chr9 58667741 58667770 -65408402 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1032 202 334 86 2 chr9 58667807 58667925 -65408247 + MIR SINE MIR 3 130 -146 3 1032 378 0 0 0 chr9 58668004 58668046 -65408126 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 1032 850 154 0 0 chr9 58668114 58668244 -65407928 - B3 SINE B2 -86 130 1 3 1032 629 257 70 33 chr9 58668244 58668451 -65407721 + B4A SINE B4 50 264 -28 3 1032 197 196 100 67 chr9 58668466 58668526 -65407646 + L2b LINE L2 3116 3177 -198 3 1032 21 57 0 0 chr9 58670566 58670601 -65405571 + GC_rich Low_complexity Low_complexity 1 35 0 3 1032 32 43 0 0 chr9 58671025 58671071 -65405101 + GC_rich Low_complexity Low_complexity 1 46 0 3 1032 222 357 0 23 chr9 58675377 58675463 -65400709 + MIRm SINE MIR 72 155 -121 3 1032 211 326 11 44 chr9 58677824 58677914 -65398258 + L3 LINE CR1 4286 4372 -117 3 1032 1102 266 20 40 chr9 58678049 58678347 -65397825 + B4A SINE B4 1 292 0 3 1032 646 173 7 14 chr9 58678347 58678625 -65397547 + (CA)n Simple_repeat Simple_repeat 1 275 0 3 1032 317 316 87 36 chr9 58678899 58679120 -65397052 - MIRb SINE MIR -6 262 38 3 1032 1650 26 0 20 chr9 58682097 58682294 -65393878 - B2_Mm1a SINE B2 0 193 1 3 1032 1758 198 71 11 chr9 58682304 58682686 -65393486 - MTD LTR MaLR -14 405 1 3 1032 324 152 0 0 chr9 58683508 58683574 -65392598 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1032 860 209 166 10 chr9 58684435 58684628 -65391544 + ID_B1 SINE B4 1 223 -1 3 1032 615 251 137 22 chr9 58685480 58685663 -65390509 + ID_B1 SINE B4 2 205 -19 3 1032 300 27 0 0 chr9 58686860 58686897 -65389275 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1032 389 346 63 0 chr9 58686897 58687056 -65389116 + MIR SINE MIR 93 261 -1 3 1032 339 25 0 0 chr9 58688331 58688371 -65387801 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1032 446 343 63 0 chr9 58689250 58689425 -65386747 + MIRb SINE MIR 29 214 -54 3 1032 342 0 0 0 chr9 58690791 58690829 -65385343 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1032 194 358 35 44 chr9 58691137 58691251 -65384921 - MIRm SINE MIR -128 148 36 3 1032 283 393 81 27 chr9 58692442 58692701 -65383471 - LTR16A1 LTR ERVL 0 456 184 3 1032 1437 220 145 21 chr9 58693028 58693400 -65382772 - MTD LTR MaLR 0 419 2 3 1032 240 323 9 57 chr9 58693752 58693857 -65382315 - MIR SINE MIR -92 116 17 3 1032 263 200 0 35 chr9 58694072 58694129 -65382043 - MIRc SINE MIR -98 170 116 3 1032 181 308 45 15 chr9 58694523 58694589 -65381583 + L4 LINE RTE 1718 1785 -244 3 1032 231 341 39 54 chr9 58696242 58696372 -65379800 - MIRb SINE MIR -29 239 112 3 1032 404 309 91 38 chr9 58697133 58697342 -65378830 + B4A SINE B4 1 220 -72 3 1032 294 244 0 0 chr9 58699479 58699561 -65376611 + CT-rich Low_complexity Low_complexity 1 82 0 3 1032 947 234 53 33 chr9 58699596 58699839 -65376333 - B4 SINE B4 -44 248 1 3 1032 207 315 45 0 chr9 58700328 58700417 -65375755 - L2 LINE L2 -2506 913 821 3 1032 407 343 77 10 chr9 58700611 58700820 -65375352 - MIRb SINE MIR -15 253 31 3 1032 323 329 65 7 chr9 58702085 58702238 -65373934 - MER121 Unknown Unknown -135 277 116 3 1032 200 176 0 0 chr9 58704189 58704223 -65371949 + G-rich Low_complexity Low_complexity 1 34 0 3 1032 222 37 0 0 chr9 58704758 58704785 -65371387 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1032 351 217 24 0 chr9 58704826 58704909 -65371263 + (CAGG)n Simple_repeat Simple_repeat 2 86 0 3 1032 627 127 0 52 chr9 58704909 58705025 -65371147 + B1_Mur4 SINE Alu 41 150 0 3 1032 345 47 0 0 chr9 58705030 58705073 -65371099 + (CCA)n Simple_repeat Simple_repeat 1 43 0 3 1032 399 313 49 106 chr9 58706151 58706418 -65369754 - MLT1A LTR MaLR 0 374 121 3 1032 589 209 50 14 chr9 58706418 58706559 -65369613 - RSINE1 SINE B4 -18 147 2 3 1032 399 313 49 106 chr9 58706559 58706641 -65369531 - MLT1A LTR MaLR -254 120 45 3 1032 246 62 0 0 chr9 58708773 58708805 -65367367 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 3 1032 203 133 0 22 chr9 58709095 58709141 -65367031 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 3 1032 324 266 256 56 chr9 58709517 58709712 -65366460 - MIRb SINE MIR -13 255 22 3 1032 835 258 58 33 chr9 58709760 58710001 -65366171 + MIRb SINE MIR 16 262 -6 3 1032 27 0 0 0 chr9 58710948 58710975 -65365197 + AT_rich Low_complexity Low_complexity 1 27 0 3 1032 195 268 113 0 chr9 58712074 58712145 -65364027 - MIRb SINE MIR -18 250 172 3 1032 265 333 91 8 chr9 58712320 58712441 -65363731 + MER97c DNA MER1_type? 59 189 -901 3 1032 333 0 0 0 chr9 58712572 58712609 -65363563 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1032 334 180 0 32 chr9 58712609 58712672 -65363500 - ID4 SINE ID -19 64 4 3 1032 363 242 108 39 chr9 58712676 58712805 -65363367 - B1F SINE Alu -6 143 6 3 1032 901 266 37 0 chr9 58713848 58714062 -65362110 + ID_B1 SINE B4 2 223 -1 3 1032 586 296 92 67 chr9 58714315 58714717 -65361455 - L1M5 LINE L1 -573 5667 5256 3 1032 185 140 34 34 chr9 58714785 58714844 -65361328 + CT-rich Low_complexity Low_complexity 3 61 0 3 1032 915 298 56 61 chr9 58715071 58715479 -65360693 - MTD LTR MaLR -13 406 1 3 1032 710 272 180 11 chr9 58715610 58716024 -65360148 - L1ME1 LINE L1 -17 6162 5669 3 1032 457 318 89 13 chr9 58716033 58716703 -65359469 - L1MA8 LINE L1 -7 6284 5126 3 1032 996 259 94 18 chr9 58716728 58717268 -65358904 + L1M4c LINE L1 2260 2827 -3555 3 1032 374 286 45 0 chr9 58717446 58717558 -65358614 + PB1D10 SINE Alu 1 117 0 3 1032 491 223 217 0 chr9 58717558 58717733 -65358439 + L1M4c LINE L1 2833 3045 -3337 3 1032 333 0 0 0 chr9 58717778 58717815 -65358357 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1032 429 20 0 0 chr9 58717815 58717864 -65358308 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1032 307 300 148 16 chr9 58718759 58718881 -65357291 - B4A SINE B4 -153 139 2 3 1032 214 175 25 0 chr9 58719635 58719675 -65356497 + GA-rich Low_complexity Low_complexity 6 46 0 3 1033 1138 102 83 22 chr9 58720396 58720577 -65355595 - B2_Mm2 SINE B2 -3 192 1 3 1033 763 281 60 103 chr9 58720807 58721224 -65354948 + MTD LTR MaLR 8 406 -13 3 1033 32 0 0 0 chr9 58724413 58724445 -65351727 + AT_rich Low_complexity Low_complexity 1 32 0 3 1033 489 296 219 26 chr9 58726192 58726635 -65349537 + Charlie1a DNA MER1_type 1 529 -926 3 1033 255 61 0 0 chr9 58726641 58726674 -65349498 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 3 1033 1273 99 0 0 chr9 58726677 58726849 -65349323 - B2_Mm2 SINE B2 -23 172 1 3 1033 559 273 274 19 chr9 58726849 58727220 -65348952 + Charlie1a DNA MER1_type 543 1008 -447 3 1033 353 274 97 0 chr9 58727316 58727440 -65348732 + Charlie1a DNA MER1_type 993 1128 -327 3 1033 258 252 68 17 chr9 58727487 58727604 -65348568 + Charlie1a DNA MER1_type 1277 1399 -56 3 1033 493 174 294 0 chr9 58728103 58728212 -65347960 + B1_Mur4 SINE Alu 4 144 -6 3 1033 203 196 54 0 chr9 58728239 58728295 -65347877 + A-rich Low_complexity Low_complexity 2 60 0 3 1033 397 269 95 41 chr9 58729290 58729437 -65346735 + MIRb SINE MIR 6 160 -108 3 1033 366 195 0 0 chr9 58729452 58729529 -65346643 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 1033 294 29 0 0 chr9 58734098 58734133 -65342039 + (CAGCC)n Simple_repeat Simple_repeat 1 35 0 3 1033 674 29 0 46 chr9 58734133 58734241 -65341931 + (CCAA)n Simple_repeat Simple_repeat 4 107 0 4 1033 243 0 0 0 chr9 58734406 58734433 -65341739 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 4 1033 398 245 59 0 chr9 58734959 58735061 -65341111 - PB1D10 SINE Alu -8 109 2 4 1033 249 301 19 31 chr9 58734978 58735080 -65341092 - B4A SINE B4 -124 168 65 4 1033 567 242 41 78 chr9 58735084 58735271 -65340901 - B3A SINE B2 0 216 6 4 1033 268 370 46 86 chr9 58735614 58735765 -65340407 - RSINE1 SINE B4 -16 149 5 4 1033 1175 199 5 9 chr9 58735824 58736037 -65340135 - B3 SINE B2 -3 213 2 4 1033 481 263 22 7 chr9 58737111 58737249 -65338923 + B1F1 SINE Alu 2 141 -8 4 1033 234 311 61 66 chr9 58738055 58738251 -65337921 - L2 LINE L2 -412 3007 2813 4 1033 738 245 242 24 chr9 58738546 58738835 -65337337 - ORR1E LTR MaLR 0 359 8 4 1033 376 291 121 6 chr9 58739146 58739319 -65336853 + MER2 DNA MER2_type 21 213 -132 4 1033 731 174 44 29 chr9 58739862 58739998 -65336174 + B1_Mur1 SINE Alu 1 138 -11 4 1033 217 231 0 0 chr9 58739999 58740038 -65336134 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1033 514 281 176 32 chr9 58740291 58740541 -65335631 - B4A SINE B4 -4 288 3 4 1033 570 245 88 25 chr9 58740605 58740764 -65335408 + B3A SINE B2 3 171 -27 4 1033 600 84 0 0 chr9 58740771 58740854 -65335318 + (CCA)n Simple_repeat Simple_repeat 1 83 0 4 1033 728 243 62 72 chr9 58741146 58741341 -65334831 - B3A SINE B2 -2 193 1 4 1033 845 261 23 84 chr9 58742191 58742454 -65333718 + B4 SINE B4 5 251 -41 4 1033 244 338 0 0 chr9 58742684 58742755 -65333417 - L2a LINE L2 -9 3417 3347 4 1033 180 111 0 0 chr9 58742819 58742846 -65333326 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1033 339 223 241 0 chr9 58742919 58743031 -65333141 + U17 snRNA snRNA 68 206 -1 4 1033 394 127 42 14 chr9 58743188 58743260 -65332912 - URR1B DNA MER1_type -1 224 151 4 1033 441 287 98 23 chr9 58743320 58743452 -65332720 + B1F SINE Alu 7 148 -1 4 1033 226 320 51 0 chr9 58743606 58743684 -65332488 + B4A SINE B4 46 127 -165 4 1033 246 329 38 0 chr9 58743663 58743742 -65332430 + B4A SINE B4 46 127 -165 4 1033 218 320 51 0 chr9 58743778 58743856 -65332316 + B4A SINE B4 46 127 -165 4 1033 214 333 51 0 chr9 58743835 58743913 -65332259 + B4A SINE B4 46 127 -165 4 1033 226 320 51 0 chr9 58743892 58743970 -65332202 + B4A SINE B4 46 127 -165 4 1033 246 329 38 0 chr9 58743949 58744028 -65332144 + B4A SINE B4 46 127 -165 4 1033 218 320 51 0 chr9 58744007 58744085 -65332087 + B4A SINE B4 46 127 -165 4 1033 218 320 51 0 chr9 58744064 58744142 -65332030 + B4A SINE B4 46 127 -165 4 1033 226 320 51 0 chr9 58744121 58744199 -65331973 + B4A SINE B4 46 127 -165 4 1033 226 320 51 0 chr9 58744178 58744256 -65331916 + B4A SINE B4 46 127 -165 4 1033 218 320 51 0 chr9 58744235 58744313 -65331859 + B4A SINE B4 46 127 -165 4 1033 309 348 78 0 chr9 58744292 58744433 -65331739 + B4A SINE B4 46 197 -95 4 1033 603 314 15 25 chr9 58745371 58745570 -65330602 - B3A SINE B2 -1 197 1 4 1033 225 202 136 98 chr9 58746262 58746394 -65329778 + BLACKJACK DNA AcHobo 758 894 -2050 4 1033 831 241 58 0 chr9 58746317 58746508 -65329664 - B3 SINE B2 -3 213 12 4 1033 190 274 322 53 chr9 58747936 58748088 -65328084 + MIRm SINE MIR 68 260 -2 4 1033 212 77 0 25 chr9 58748694 58748734 -65327438 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1033 324 0 0 0 chr9 58750203 58750239 -65325933 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 1033 1165 59 32 7 chr9 58750239 58750393 -65325779 - B2_Mm1t SINE B2 -35 158 1 4 1033 203 293 101 79 chr9 58750492 58750581 -65325591 - L4 LINE RTE -797 1232 1142 4 1033 623 231 13 77 chr9 58751409 58751529 -65324643 + B1_Mm SINE Alu 3 124 -23 4 1033 423 0 0 0 chr9 58751529 58751576 -65324596 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1033 623 231 13 77 chr9 58751576 58751610 -65324562 + B1_Mm SINE Alu 125 147 0 4 1033 1238 34 0 7 chr9 58752958 58753107 -65323065 + B1_Mus1 SINE Alu 1 148 0 4 1033 533 213 79 0 chr9 58753368 58753495 -65322677 + B1_Mur1 SINE Alu 3 139 -10 4 1033 222 213 0 0 chr9 58753503 58753550 -65322622 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 4 1033 381 338 84 20 chr9 58754023 58754225 -65321947 - MIRc SINE MIR -49 219 5 4 1033 952 119 106 0 chr9 58756784 58756944 -65319228 + URR1A DNA MER1_type 50 226 0 4 1033 511 291 73 60 chr9 58756944 58757099 -65319073 - CYRA11_Mm Unknown Y-chromosome -446 171 13 4 1033 2324 143 53 25 chr9 58758042 58758437 -65317735 + MTC LTR MaLR 2 407 -14 4 1033 575 280 214 18 chr9 58758540 58759209 -65316963 - L1ME2 LINE L1 -8 6156 5356 4 1033 416 230 101 18 chr9 58759226 58759443 -65316729 - L1ME2 LINE L1 -767 5379 5145 4 1033 704 263 33 55 chr9 58759447 58759628 -65316544 + B3 SINE B2 3 179 -37 4 1033 378 283 132 8 chr9 58759611 58759630 -65316542 - RSINE1 SINE B4 -28 137 119 4 1033 513 0 0 0 chr9 58759630 58759687 -65316485 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1033 378 283 132 8 chr9 58759687 58759788 -65316384 - RSINE1 SINE B4 -47 118 2 4 1033 302 198 46 11 chr9 58760209 58760296 -65315876 + L1MC4 LINE L1 7224 7313 -729 4 1033 429 287 155 58 chr9 58760331 58760900 -65315272 + L1MC4 LINE L1 7418 8041 -1 4 1033 222 353 29 22 chr9 58762401 58762537 -65313635 - MIR3 SINE MIR -23 185 49 4 1033 814 201 113 5 chr9 58763176 58763371 -65312801 - B3 SINE B2 0 216 1 4 1033 1128 85 0 0 chr9 58763614 58763755 -65312417 + B1_Mus1 SINE Alu 4 144 -4 4 1033 267 317 0 52 chr9 58765052 58765082 -65311090 - YREP_Mm Unknown Unknown -1470 342 321 4 1033 709 208 0 181 chr9 58765082 58765264 -65310908 + B1_Mur1 SINE Alu 1 149 0 4 1033 537 266 112 12 chr9 58765360 58765520 -65310652 + RMER30 DNA MER1_type 26 201 -1 4 1033 311 192 36 151 chr9 58765720 58765840 -65310332 + B1F SINE Alu 40 149 0 4 1033 1041 118 209 0 chr9 58766682 58766869 -65309303 + URR1A DNA MER1_type 1 226 0 4 1033 337 314 55 55 chr9 58768410 58768592 -65307580 - L1MC4 LINE L1 -509 7533 7352 4 1033 213 39 0 0 chr9 58769157 58769183 -65306989 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1033 635 278 64 39 chr9 58769994 58770275 -65305897 - B4A SINE B4 -4 288 1 4 1033 263 314 0 0 chr9 58771962 58772032 -65304140 + L2b LINE L2 3285 3354 -21 4 1033 250 276 64 75 chr9 58772115 58772209 -65303963 - Charlie4z DNA MER1_type -35 132 40 4 1033 200 289 7 59 chr9 58772717 58772778 -65303394 + L2b LINE L2 3292 3402 -24 4 1033 381 22 0 0 chr9 58773969 58774015 -65302157 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1033 360 0 0 0 chr9 58774015 58774054 -65302118 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1033 23 33 0 0 chr9 58774137 58774167 -65302005 + AT_rich Low_complexity Low_complexity 1 30 0 4 1033 4635 32 16 7 chr9 58775141 58775701 -65300471 - L1Md_F2 LINE L1 -2 6580 6016 4 1033 232 364 68 0 chr9 58775781 58775869 -65300303 - MER58B DNA MER1_type -243 98 5 4 1033 522 139 0 0 chr9 58777244 58777330 -65298842 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 4 1033 405 0 0 0 chr9 58777616 58777661 -65298511 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1033 190 333 66 66 chr9 58777711 58777817 -65298355 - L2b LINE L2 -44 3331 3226 4 1033 212 301 0 0 chr9 58779034 58779117 -65297055 + A-rich Low_complexity Low_complexity 1 83 0 4 1033 231 267 66 13 chr9 58779790 58779866 -65296306 - L3 LINE CR1 -149 4340 4261 4 1033 186 283 208 20 chr9 58780194 58780295 -65295877 - MIR SINE MIR -77 185 66 4 1033 2787 134 86 76 chr9 58781822 58782428 -65293744 + RLTR18 LTR ERVK 1 612 -4 4 1033 260 83 21 0 chr9 58782911 58782959 -65293213 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 4 1033 917 181 0 0 chr9 58782960 58783109 -65293063 - B1_Mur3 SINE Alu 0 149 1 4 1033 334 276 197 30 chr9 58783414 58783683 -65292489 + L1MC4a LINE L1 7326 7639 -243 4 1033 351 0 0 0 chr9 58784156 58784195 -65291977 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1033 1205 54 0 0 chr9 58784195 58784342 -65291830 - B1_Mm SINE Alu 0 147 1 4 1033 266 260 57 94 chr9 58784460 58784566 -65291606 + PB1D7 SINE Alu 18 119 -1 4 1033 515 201 214 7 chr9 58784634 58784779 -65291393 - MTE2a LTR MaLR -11 368 194 4 1033 706 123 132 0 chr9 58785843 58785957 -65290215 + B3 SINE B2 2 130 -86 4 1033 1169 96 60 22 chr9 58786014 58786196 -65289976 + B2_Mm2 SINE B2 1 189 -6 4 1033 2814 196 42 35 chr9 58787383 58788003 -65288169 - Lx7 LINE L1 -215 7481 6858 4 1033 584 229 112 46 chr9 58788009 58788206 -65287966 + Lx7 LINE L1 7485 7694 -2 4 1033 27 0 0 0 chr9 58788226 58788253 -65287919 + AT_rich Low_complexity Low_complexity 1 27 0 4 1033 381 22 0 0 chr9 58791608 58791654 -65284518 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1033 576 246 14 0 chr9 58792521 58792659 -65283513 - B1F SINE Alu -7 142 3 4 1033 24 32 0 0 chr9 58792662 58792693 -65283479 + AT_rich Low_complexity Low_complexity 1 31 0 4 1033 230 218 34 68 chr9 58792899 58792958 -65283214 - B4 SINE B4 -159 133 77 4 1033 2030 179 33 45 chr9 58792977 58793403 -65282769 + MTC LTR MaLR 1 421 0 4 1033 339 366 27 0 chr9 58793585 58793697 -65282475 - PB1D10 SINE Alu 0 117 3 4 1033 3017 51 0 0 chr9 58793789 58794160 -65282012 + L1_Mus3 LINE L1 5748 6118 -520 5 1033 2623 54 0 0 chr9 58794209 58794540 -65281632 - L1_Mus1 LINE L1 0 6567 6237 5 1033 256 325 95 48 chr9 58794550 58794676 -65281496 - ORR1E LTR MaLR 0 379 248 5 1033 453 274 9 27 chr9 58794745 58794886 -65281286 - ORR1E LTR MaLR -236 134 1 5 1033 24 53 0 0 chr9 58795454 58795492 -65280680 + AT_rich Low_complexity Low_complexity 1 38 0 5 1033 186 301 110 55 chr9 58795591 58795700 -65280472 - MIR3 SINE MIR -41 167 53 5 1033 491 216 80 22 chr9 58795730 58795867 -65280305 + B1F SINE Alu 5 149 0 5 1033 379 279 11 18 chr9 58796551 58796675 -65279497 - PB1D10 SINE Alu -26 123 1 5 1033 591 279 11 75 chr9 58797054 58797228 -65278944 - RSINE1 SINE B4 -2 163 1 5 1033 21 36 0 0 chr9 58797336 58797364 -65278808 + AT_rich Low_complexity Low_complexity 1 28 0 5 1033 4583 31 0 0 chr9 58797454 58798010 -65278162 - L1_Mm LINE L1 -1219 4664 4109 5 1033 8957 5 0 1 chr9 58798010 58799007 -65277165 + L1Md_T LINE L1 5587 6582 0 5 1033 545 299 80 60 chr9 58799355 58799554 -65276618 - MER58A DNA MER1_type 0 224 22 5 1033 327 230 58 0 chr9 58800567 58800654 -65275518 - L1M4b LINE L1 -4656 2431 2291 5 1033 720 272 53 26 chr9 58800723 58800912 -65275260 + B3A SINE B2 1 194 -4 5 1033 407 215 167 60 chr9 58801079 58801247 -65274925 + B3A SINE B2 2 187 -11 5 1033 228 211 0 0 chr9 58802195 58802233 -65273939 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1033 442 314 28 39 chr9 58802367 58802549 -65273623 + LTR41 LTR ERVL 8 187 -581 5 1033 722 324 149 16 chr9 58802557 58802933 -65273239 + LTR41 LTR ERVL 317 742 -26 5 1033 906 139 195 27 chr9 58803240 58803425 -65272747 - B3 SINE B2 0 216 1 5 1033 733 202 190 0 chr9 58803443 58803601 -65272571 - B3 SINE B2 -14 202 15 5 1033 1337 66 71 0 chr9 58804399 58804581 -65271591 - B2_Mm2 SINE B2 0 195 1 5 1033 556 261 82 22 chr9 58804591 58804775 -65271397 - B4A SINE B4 -86 206 12 5 1033 275 274 20 59 chr9 58804824 58804925 -65271247 - B1F1 SINE Alu -51 98 2 5 1033 787 203 0 0 chr9 58805152 58805285 -65270887 + B1_Mur2 SINE Alu 1 133 -16 5 1033 240 282 28 0 chr9 58805290 58805361 -65270811 + GA-rich Low_complexity Low_complexity 2 74 0 5 1033 210 266 61 30 chr9 58805455 58805521 -65270651 + MIR SINE MIR 39 106 -156 5 1033 27 49 0 0 chr9 58805953 58805994 -65270178 + AT_rich Low_complexity Low_complexity 1 41 0 5 1033 489 285 67 0 chr9 58806287 58806466 -65269706 - Lx9 LINE L1 -161 7483 7293 5 1033 4484 171 113 6 chr9 58806464 58807338 -65268834 + Lx5 LINE L1 6083 7050 0 5 1033 25 31 0 0 chr9 58808789 58808821 -65267351 + AT_rich Low_complexity Low_complexity 1 32 0 5 1033 207 100 0 0 chr9 58809656 58809686 -65266486 + (CG)n Simple_repeat Simple_repeat 2 31 0 5 1033 426 20 0 0 chr9 58809686 58809736 -65266436 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1033 24 32 0 0 chr9 58810290 58810321 -65265851 + AT_rich Low_complexity Low_complexity 1 31 0 5 1033 1918 284 78 14 chr9 58810511 58811092 -65265080 + MER21B LTR ERV1 89 706 -157 5 1033 335 336 101 18 chr9 58811113 58811331 -65264841 + L1ME1 LINE L1 5509 5744 -2138 5 1033 317 355 92 57 chr9 58811523 58811750 -65264422 + Arthur1B DNA Tip100 207 441 -784 5 1033 283 228 169 8 chr9 58811879 58811941 -65264231 + Arthur1B DNA Tip100 1003 1067 -158 5 1033 252 0 0 0 chr9 58811941 58811969 -65264203 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1033 283 221 225 48 chr9 58811969 58812095 -65264077 + Arthur1B DNA Tip100 1068 1225 0 5 1033 1260 87 66 0 chr9 58812307 58812490 -65263682 + B2_Mm2 SINE B2 1 195 0 5 1033 227 288 87 35 chr9 58812835 58813008 -65263164 + L1M5 LINE L1 4905 5086 -1060 5 1033 234 287 175 19 chr9 58813117 58813220 -65262952 - ID_B1 SINE B4 -12 212 94 5 1033 324 294 95 33 chr9 58813270 58813651 -65262521 + L1ME1 LINE L1 5689 6090 -74 5 1033 751 148 55 0 chr9 58813818 58813946 -65262226 + MT2A LTR ERVL 1 135 -398 5 1033 24 0 0 0 chr9 58813974 58813998 -65262174 + AT_rich Low_complexity Low_complexity 1 24 0 5 1033 3083 119 59 22 chr9 58813998 58814538 -65261634 - Lx4A LINE L1 0 7058 6499 5 1033 5397 109 42 4 chr9 58814538 58815357 -65260815 + Lx4A LINE L1 5698 6547 -511 5 1033 2863 167 18 19 chr9 58815357 58815870 -65260302 + RLTR11A LTR ERVK 17 528 0 5 1033 1624 197 57 34 chr9 58815870 58816253 -65259919 + MT2A LTR ERVL 131 522 -11 5 1033 359 322 40 27 chr9 58816425 58816575 -65259597 + MER58A DNA MER1_type 42 193 -31 5 1033 635 294 116 9 chr9 58818443 58818676 -65257496 + MLT2B1 LTR ERVL 8 265 -255 5 1033 344 233 117 104 chr9 58818732 58818895 -65257277 + MLT2B1 LTR ERVL 390 554 -2 5 1033 1230 91 0 6 chr9 58819116 58819282 -65256890 - B2_Mm2 SINE B2 -27 168 4 5 1033 499 325 40 16 chr9 58819410 58819657 -65256515 + L1ME2z LINE L1 5333 5585 -859 5 1033 437 300 90 6 chr9 58819675 58819965 -65256207 + L1ME2z LINE L1 5817 6135 -309 5 1033 1014 83 14 0 chr9 58820024 58820169 -65256003 + B1_Mur4 SINE Alu 2 148 -2 5 1033 888 209 84 0 chr9 58820192 58820383 -65255789 + B3 SINE B2 10 216 0 5 1033 36 40 0 0 chr9 58820538 58820588 -65255584 + AT_rich Low_complexity Low_complexity 1 50 0 5 1033 4549 46 23 0 chr9 58820591 58821156 -65255016 - L1_Mus1 LINE L1 0 6567 5990 5 1033 459 180 340 0 chr9 58821399 58821549 -65254623 + B3 SINE B2 2 202 -14 5 1033 25 0 0 0 chr9 58821552 58821577 -65254595 + AT_rich Low_complexity Low_complexity 1 25 0 5 1033 25 0 0 0 chr9 58822236 58822261 -65253911 + AT_rich Low_complexity Low_complexity 1 25 0 5 1033 236 135 0 0 chr9 58822503 58822540 -65253632 - L1M5 LINE L1 -566 5607 5571 5 1033 333 82 0 0 chr9 58822892 58822941 -65253231 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1033 233 311 16 0 chr9 58823156 58823217 -65252955 - ID4_ SINE ID -19 64 3 5 1033 334 341 98 58 chr9 58823218 58823442 -65252730 - L1M5 LINE L1 -3493 2653 2421 5 1033 279 260 94 19 chr9 58823473 58823579 -65252593 + PB1D7 SINE Alu 5 118 -2 5 1033 559 187 103 17 chr9 58823613 58823787 -65252385 - L1MA9 LINE L1 -6 6285 6097 5 1033 1044 254 88 9 chr9 58823788 58824129 -65252043 - L1MA9 LINE L1 -339 5973 5606 5 1033 849 230 74 89 chr9 58824124 58824665 -65251507 - L1MA9 LINE L1 -827 5464 4938 5 1033 305 336 58 29 chr9 58824714 58824852 -65251320 - MLT1G LTR MaLR -408 183 42 5 1033 266 289 9 118 chr9 58824847 58824957 -65251215 - B3 SINE B2 -118 98 1 5 1033 22 35 0 0 chr9 58825092 58825121 -65251051 + AT_rich Low_complexity Low_complexity 1 29 0 5 1033 518 283 41 41 chr9 58825965 58826160 -65250012 + B4A SINE B4 17 211 -81 5 1033 21 0 0 0 chr9 58827148 58827169 -65249003 + AT_rich Low_complexity Low_complexity 1 21 0 5 1033 401 95 40 13 chr9 58827508 58827583 -65248589 - L1Md_F2 LINE L1 -10 6572 6496 5 1033 209 98 0 136 chr9 58827697 58827756 -65248416 + (CACAC)n Simple_repeat Simple_repeat 3 53 0 5 1033 483 291 133 7 chr9 58829163 58829298 -65246874 + MER20 DNA MER1_type 7 158 -61 5 1033 517 203 164 0 chr9 58830462 58830590 -65245582 + B1_Mur1 SINE Alu 1 149 0 5 1033 266 323 144 88 chr9 58831502 58831855 -65244317 - L2a LINE L2 -95 3331 2959 5 1033 1871 178 108 8 chr9 58831942 58832322 -65243850 + MTD LTR MaLR 1 418 -1 5 1033 210 128 0 0 chr9 58832649 58832688 -65243484 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1033 277 211 56 14 chr9 58832815 58832887 -65243285 - B1F1 SINE Alu -42 75 1 5 1033 603 205 17 0 chr9 58832924 58833041 -65243131 - PB1D9 SINE Alu 0 120 2 5 1033 915 174 0 7 chr9 58833087 58833237 -65242935 - B1_Mur2 SINE Alu 0 149 1 5 1033 392 323 94 32 chr9 58833851 58834051 -65242121 + L1MC4 LINE L1 6489 6707 -1175 5 1033 507 33 0 0 chr9 58834051 58834112 -65242060 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1033 592 296 183 28 chr9 58834112 58834794 -65241378 + L1MC4 LINE L1 6733 7520 -522 5 1033 679 271 43 77 chr9 58834920 58835095 -65241077 + L1MC4 LINE L1 7738 7917 -125 5 1033 1235 178 261 3 chr9 58835095 58835428 -65240744 + MTD LTR MaLR 1 419 0 5 1033 679 271 43 77 chr9 58835428 58835552 -65240620 + L1MC4 LINE L1 7918 8026 -16 5 1033 350 328 130 34 chr9 58835580 58835788 -65240384 + MIR SINE MIR 5 232 -30 5 1033 1157 151 0 0 chr9 58836959 58837138 -65239034 - URR1B DNA MER1_type 0 225 47 5 1033 485 278 61 30 chr9 58836960 58837190 -65238982 + CYRA11_Mm Unknown Y-chromosome 172 408 -209 5 1033 240 35 0 0 chr9 58837771 58837800 -65238372 + (CG)n Simple_repeat Simple_repeat 2 30 0 5 1033 198 0 0 0 chr9 58837800 58837821 -65238351 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1033 26 0 0 0 chr9 58838786 58838812 -65237360 + AT_rich Low_complexity Low_complexity 1 26 0 5 1033 626 287 136 25 chr9 58838817 58839060 -65237112 + B4A SINE B4 5 274 -18 5 1033 1373 64 21 26 chr9 58839184 58839377 -65236795 - B2_Mm2 SINE B2 -2 193 2 5 1033 582 208 194 11 chr9 58839412 58839587 -65236585 - B3 SINE B2 -9 207 1 5 1033 518 43 0 14 chr9 58839830 58839900 -65236272 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 5 1033 391 258 157 29 chr9 58840326 58840509 -65235663 - MIR SINE MIR -16 246 50 5 1033 424 227 193 51 chr9 58842525 58842799 -65233373 + MER33 DNA MER1_type 2 314 -10 5 1033 365 215 10 79 chr9 58843321 58843422 -65232750 + MTEb LTR MaLR 272 365 -14 5 1033 848 258 37 9 chr9 58843477 58843692 -65232480 + ID_B1 SINE B4 1 221 -3 5 1033 416 198 76 17 chr9 58845219 58845337 -65230835 + L1MC5 LINE L1 5351 5475 -2407 5 1033 359 289 59 20 chr9 58846188 58846340 -65229832 + L1MC5 LINE L1 6620 6777 -1184 5 1033 881 208 92 20 chr9 58846349 58846545 -65229627 + B3 SINE B2 1 210 -6 5 1033 261 119 0 0 chr9 58846779 58846821 -65229351 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 5 1033 1306 85 26 11 chr9 58846822 58847012 -65229160 - B2_Mm2 SINE B2 -1 194 2 5 1033 241 313 84 34 chr9 58847175 58847294 -65228878 - MER58C DNA MER1_type -5 210 86 5 1033 404 214 0 0 chr9 58847300 58847370 -65228802 + RSINE1 SINE B4 20 89 -76 5 1033 681 13 0 0 chr9 58847395 58847473 -65228699 + (GGGGA)n Simple_repeat Simple_repeat 3 80 0 5 1033 252 315 6 30 chr9 58847660 58847827 -65228345 + L1MC5 LINE L1 7322 7484 -477 5 1033 231 235 41 102 chr9 58847901 58848048 -65228124 + L1M4 LINE L1 5693 5830 -348 5 1033 660 199 29 7 chr9 58848048 58848185 -65227987 + RMER15 LTR ERVL 1 140 -435 6 1033 948 255 95 20 chr9 58848208 58848556 -65227616 + L1MC3 LINE L1 7321 7694 -91 6 1033 263 268 54 53 chr9 58849384 58849499 -65226673 - ORR1E LTR MaLR -168 191 22 6 1033 425 345 98 37 chr9 58849524 58849738 -65226434 + MIR SINE MIR 5 231 -31 6 1033 28 0 0 0 chr9 58849777 58849805 -65226367 + AT_rich Low_complexity Low_complexity 1 28 0 6 1033 23 54 0 0 chr9 58849904 58849941 -65226231 + AT_rich Low_complexity Low_complexity 1 37 0 6 1033 21 0 0 0 chr9 58849994 58850015 -65226157 + AT_rich Low_complexity Low_complexity 1 21 0 6 1033 655 275 0 30 chr9 58850157 58850322 -65225850 - B4A SINE B4 -2 290 131 6 1033 198 0 0 0 chr9 58850328 58850350 -65225822 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 129 1447 222 4 4 chr9 58851237 58851508 -65224664 - RLTR20A LTR ERVK 0 541 271 6 1034 32 0 0 0 chr9 58851517 58851549 -65224623 + AT_rich Low_complexity Low_complexity 1 32 0 6 1034 782 141 2 31 chr9 58852101 58852243 -65223929 + B1_Mus1 SINE Alu 17 148 -1 6 1034 180 0 0 0 chr9 58852244 58852264 -65223908 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1034 1520 259 88 45 chr9 58852453 58852655 -65223517 + L1MD LINE L1 3544 3778 -2368 6 1034 535 245 13 13 chr9 58852655 58852804 -65223368 + B1F SINE Alu 1 149 0 6 1034 1520 259 88 45 chr9 58852804 58853304 -65222868 + L1MD LINE L1 3779 4276 -1870 6 1034 707 317 51 16 chr9 58853503 58853955 -65222217 + L1MD LINE L1 4562 5029 -1117 6 1034 367 224 0 0 chr9 58854155 58854222 -65221950 + PB1D9 SINE Alu 2 68 -52 6 1034 2664 267 30 0 chr9 58854244 58854869 -65221303 - Lx9 LINE L1 -613 7031 6388 6 1034 1045 71 0 0 chr9 58854871 58855011 -65221161 + B2_Mm2 SINE B2 1 140 -55 6 1034 455 228 7 0 chr9 58855071 58855220 -65220952 + (CA)n Simple_repeat Simple_repeat 1 150 0 6 1034 203 323 0 10 chr9 58855220 58855317 -65220855 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 6 1034 1398 256 33 12 chr9 58855332 58855731 -65220441 + Lx9 LINE L1 7055 7461 -183 6 1034 209 108 27 0 chr9 58855741 58855778 -65220394 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 6 1034 28 29 0 0 chr9 58855822 58855857 -65220315 + AT_rich Low_complexity Low_complexity 1 35 0 6 1034 803 153 51 0 chr9 58856016 58856153 -65220019 - B1_Mus1 SINE Alu 0 148 5 6 1034 781 311 37 15 chr9 58856156 58856462 -65219710 + L1ME1 LINE L1 5348 5673 -506 6 1034 234 0 0 0 chr9 58856462 58856488 -65219684 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1034 781 306 35 16 chr9 58856488 58856518 -65219654 + L1ME1 LINE L1 5674 5699 -480 6 1034 425 242 135 0 chr9 58856552 58856730 -65219442 + L1ME1 LINE L1 5794 5995 -184 6 1034 477 203 121 8 chr9 58856756 58856880 -65219292 + B1_Mur1 SINE Alu 11 148 -1 6 1034 27 49 0 0 chr9 58856960 58857001 -65219171 + AT_rich Low_complexity Low_complexity 1 41 0 6 1034 243 0 0 0 chr9 58857075 58857102 -65219070 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 1034 538 264 88 40 chr9 58857115 58857478 -65218694 + L1MA4A LINE L1 5599 6013 -284 6 1034 282 271 126 11 chr9 58857901 58858084 -65218088 + L1MA8 LINE L1 5595 5798 -493 6 1034 325 214 28 14 chr9 58858190 58858261 -65217911 + PB1D10 SINE Alu 7 78 -39 6 1034 329 162 0 9 chr9 58858319 58858385 -65217787 + L1MA8 LINE L1 5869 5934 -378 6 1034 1248 87 20 10 chr9 58858385 58858582 -65217590 + L1Md_F2 LINE L1 6384 6582 0 6 1034 307 242 0 57 chr9 58858582 58858620 -65217552 + L1MA8 LINE L1 5935 5967 -345 6 1034 359 224 108 36 chr9 58858747 58858858 -65217314 + RLTR41 LTR ERV1 263 381 -65 6 1034 332 313 133 4 chr9 58858884 58859163 -65217009 + L1MA8 LINE L1 5936 6250 -41 6 1034 21 0 0 0 chr9 58859185 58859206 -65216966 + AT_rich Low_complexity Low_complexity 1 21 0 6 1034 286 322 119 15 chr9 58859430 58859632 -65216540 + L1M5 LINE L1 5399 5621 -573 6 1034 1698 233 48 32 chr9 58859623 58860035 -65216137 + Lx5 LINE L1 6629 7047 -3 6 1034 335 310 18 0 chr9 58860164 58860277 -65215895 + L1ME5 LINE L1 5788 5902 -292 6 1034 223 295 153 15 chr9 58860291 58860422 -65215750 - MIRb SINE MIR -67 201 53 6 1034 280 169 231 0 chr9 58860507 58860572 -65215600 + RSINE1 SINE B4 54 133 -32 6 1034 1156 155 86 10 chr9 58862032 58862241 -65213931 - URR1B DNA MER1_type 0 225 1 6 1034 662 300 58 0 chr9 58863271 58863461 -65212711 + ID_B1 SINE B4 1 201 -23 6 1034 207 0 0 0 chr9 58863463 58863486 -65212686 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1034 184 30 61 0 chr9 58863590 58863623 -65212549 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1034 28 0 0 0 chr9 58864219 58864247 -65211925 + AT_rich Low_complexity Low_complexity 1 28 0 6 1034 524 282 30 15 chr9 58864248 58864381 -65211791 - B1F2 SINE Alu -14 135 1 6 1034 229 216 39 0 chr9 58864422 58864473 -65211699 - MIR SINE MIR -123 139 87 6 1034 263 320 118 29 chr9 58864670 58864929 -65211243 + L2b LINE L2 3101 3387 0 6 1034 516 16 0 0 chr9 58865188 58865249 -65210923 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1034 4471 69 5 2 chr9 58866136 58866728 -65209444 - L1_Mus3 LINE L1 -4 6634 6041 6 1034 369 225 12 0 chr9 58867081 58867161 -65209011 + ID4_ SINE ID 3 83 0 6 1034 4574 4 0 0 chr9 58867455 58867961 -65208211 - L1Md_A LINE L1 -1 6581 6076 6 1034 261 0 0 0 chr9 58868688 58868717 -65207455 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1034 646 264 84 34 chr9 58868730 58868993 -65207179 - B4A SINE B4 -12 280 5 6 1034 442 330 111 45 chr9 58868993 58869282 -65206890 + L1MEg LINE L1 455 762 -5480 6 1034 321 250 84 28 chr9 58869349 58869456 -65206716 + L1MEg LINE L1 896 1008 -5234 6 1034 204 179 0 0 chr9 58869566 58869605 -65206567 + GA-rich Low_complexity Low_complexity 3 41 0 6 1034 759 271 104 51 chr9 58869605 58869621 -65206551 + L1MEg LINE L1 1184 1200 -5042 6 1034 237 33 0 0 chr9 58869621 58869651 -65206521 + (CAGAA)n Simple_repeat Simple_repeat 2 31 0 6 1034 759 271 104 51 chr9 58869651 58870257 -65205915 + L1MEg LINE L1 1201 1839 -4403 6 1034 391 146 12 24 chr9 58870395 58870479 -65205693 + GA-rich Low_complexity Low_complexity 3 85 0 6 1034 282 355 56 31 chr9 58870479 58870639 -65205533 + RSINE1 SINE B4 2 165 0 6 1034 195 188 0 0 chr9 58870667 58870715 -65205457 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1034 29 47 0 0 chr9 58870819 58870862 -65205310 + AT_rich Low_complexity Low_complexity 1 43 0 6 1034 335 300 79 45 chr9 58870920 58870952 -65205220 + L1MEg LINE L1 2327 2357 -3789 6 1034 1042 250 0 18 chr9 58870952 58871172 -65205000 + B3 SINE B2 1 216 0 6 1034 335 300 79 45 chr9 58871172 58871317 -65204855 + L1MEg LINE L1 2358 2510 -3636 6 1034 403 289 95 48 chr9 58871768 58871957 -65204215 + RMER30 DNA MER1_type 4 201 -1 6 1034 496 228 110 0 chr9 58871961 58872088 -65204084 + B1F SINE Alu 9 149 0 6 1034 480 35 0 0 chr9 58872092 58872150 -65204022 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 6 1034 238 314 57 41 chr9 58872403 58872526 -65203646 - MIR SINE MIR 0 262 138 6 1034 1313 68 0 33 chr9 58872941 58873123 -65203049 + B2_Mm2 SINE B2 2 177 -18 6 1034 255 231 76 15 chr9 58873246 58873312 -65202860 - MLT1A1 LTR MaLR -4 404 335 6 1034 311 344 55 51 chr9 58873583 58873856 -65202316 + B4 SINE B4 2 275 -17 6 1034 284 286 30 53 chr9 58873895 58874028 -65202144 + L1MC LINE L1 5416 5545 -2337 6 1034 36 40 0 0 chr9 58874480 58874530 -65201642 + AT_rich Low_complexity Low_complexity 1 50 0 6 1034 206 95 0 23 chr9 58875251 58875294 -65200878 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1034 192 200 0 0 chr9 58875374 58875414 -65200758 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1034 1229 41 0 0 chr9 58875522 58875669 -65200503 + B1_Mus2 SINE Alu 1 147 0 6 1034 255 61 0 0 chr9 58875669 58875702 -65200470 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 6 1034 428 177 156 0 chr9 58876062 58876158 -65200014 + B1_Mur4 SINE Alu 3 113 -37 6 1034 405 239 35 60 chr9 58876286 58876402 -65199770 + PB1D7 SINE Alu 1 113 -7 6 1034 1094 221 53 8 chr9 58877082 58877328 -65198844 - MTE2b LTR MaLR 0 379 123 6 1034 1558 169 46 50 chr9 58877360 58877882 -65198290 - RLTR12B LTR ERVK -88 480 1 6 1034 371 290 56 20 chr9 58878779 58878952 -65197220 + B3 SINE B2 2 189 -9 6 1034 1496 148 254 9 chr9 58879568 58879798 -65196374 - MTD LTR MaLR -2 417 104 6 1034 243 0 0 0 chr9 58879798 58879825 -65196347 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1034 1496 148 254 9 chr9 58879825 58879929 -65196243 - MTD LTR MaLR -316 103 2 6 1034 187 327 116 18 chr9 58880985 58881097 -65195075 + L3 LINE CR1 4223 4345 -144 6 1034 525 202 16 16 chr9 58882005 58882131 -65194041 + RSINE1 SINE B4 38 163 -2 6 1034 198 0 0 0 chr9 58882132 58882154 -65194018 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 6 1034 255 267 0 0 chr9 58882931 58883006 -65193166 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 1034 272 137 0 19 chr9 58883831 58883883 -65192289 + (CAG)n Simple_repeat Simple_repeat 2 52 0 6 1034 197 65 0 31 chr9 58884031 58884063 -65192109 + (CCCGG)n Simple_repeat Simple_repeat 2 32 0 6 1034 21 71 0 0 chr9 58884253 58884295 -65191877 + GC_rich Low_complexity Low_complexity 1 42 0 6 1034 25 0 0 0 chr9 58884475 58884500 -65191672 + GC_rich Low_complexity Low_complexity 1 25 0 6 1034 229 189 0 19 chr9 58885719 58885773 -65190399 + MIRc SINE MIR 199 251 -17 6 1034 1465 126 126 0 chr9 58887014 58887292 -65188880 - Lx LINE L1 -2 6652 6340 6 1034 185 309 0 147 chr9 58887460 58887555 -65188617 - L2b LINE L2 0 3375 3295 6 1034 211 389 57 14 chr9 58887752 58887893 -65188279 - L2b LINE L2 -604 2815 2669 6 1034 1192 118 0 36 chr9 58888047 58888241 -65187931 + B2_Mm1a SINE B2 2 188 -5 6 1034 207 305 85 0 chr9 58888242 58888301 -65187871 - L2b LINE L2 -985 2434 2371 6 1034 198 71 0 0 chr9 58888781 58888809 -65187363 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 6 1034 1190 48 7 0 chr9 58888814 58888960 -65187212 - B1_Mus1 SINE Alu -1 147 1 6 1034 1010 256 70 23 chr9 58889315 58889630 -65186542 + ORR1D2 LTR MaLR 1 325 -34 6 1034 956 167 9 86 chr9 58889628 58889838 -65186334 + RLTR18B LTR ERVK 6 199 -313 6 1034 1539 225 51 24 chr9 58889845 58890218 -65185954 + RLTR18B LTR ERVK 129 511 -1 6 1034 213 39 0 0 chr9 58890347 58890373 -65185799 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1034 725 85 42 21 chr9 58890373 58890517 -65185655 - RMER17B LTR ERVK -500 458 312 7 1034 240 402 0 0 chr9 58891017 58891144 -65185028 - L2b LINE L2 -1272 2147 2021 6 1034 21 0 0 0 chr9 58891148 58891169 -65185003 + AT_rich Low_complexity Low_complexity 1 21 0 7 1034 283 247 26 0 chr9 58891743 58891820 -65184352 + ID_B1 SINE B4 83 161 -63 7 1034 259 292 19 19 chr9 58891750 58891858 -65184314 + PB1D10 SINE Alu 10 117 0 7 1034 312 262 160 65 chr9 58892273 58892473 -65183699 + MLT1A0 LTR MaLR 147 365 0 7 1034 216 0 0 0 chr9 58892569 58892593 -65183579 + (GA)n Simple_repeat Simple_repeat 1 24 0 7 1034 590 241 94 6 chr9 58893491 58893650 -65182522 - B3 SINE B2 -35 181 9 7 1034 379 229 181 0 chr9 58893671 58893776 -65182396 - PB1 SINE Alu -3 124 1 7 1034 800 248 29 29 chr9 58893842 58894050 -65182122 - B4A SINE B4 -83 209 2 7 1034 4369 20 2 12 chr9 58894076 58894574 -65181598 - MT2_Mm LTR ERVL 0 493 1 7 1034 321 0 0 0 chr9 58894574 58894612 -65181560 - MERVL-int LTR ERVL 0 5485 5448 7 1034 362 167 46 35 chr9 58894612 58894699 -65181473 - ORR1A3-int LTR MaLR -1323 640 553 7 1034 48449 15 6 0 chr9 58894699 58900025 -65176147 - MERVL-int LTR ERVL -125 5360 1 7 1034 4369 20 2 12 chr9 58900025 58900523 -65175649 - MT2_Mm LTR ERVL 0 493 1 7 1034 647 262 24 6 chr9 58901141 58901306 -65174866 + ID_B1 SINE B4 2 169 -55 7 1034 336 246 0 0 chr9 58902005 58902085 -65174087 - BC1_Mm scRNA scRNA -65 87 8 7 1034 231 36 0 0 chr9 58902184 58902212 -65173960 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 7 1034 851 181 7 0 chr9 58902212 58902356 -65173816 - B1_Mus1 SINE Alu -1 147 3 7 1034 716 191 0 0 chr9 58902457 58902583 -65173589 - B1_Mur3 SINE Alu -1 148 23 7 1034 268 247 79 45 chr9 58902767 58902945 -65173227 - L1M4 LINE L1 -1738 4408 4225 7 1034 231 312 13 0 chr9 58903235 58903312 -65172860 + MLT1M LTR MaLR 108 185 -487 7 1034 238 148 37 0 chr9 58903653 58903707 -65172465 + CT-rich Low_complexity Low_complexity 2 57 0 7 1034 615 262 7 0 chr9 58903743 58903888 -65172284 - RSINE1 SINE B4 -4 161 16 7 1034 293 402 8 27 chr9 58904861 58905122 -65171050 + LFSINE_Vert SINE SINE 70 325 -134 7 1034 253 196 0 0 chr9 58906109 58906160 -65170012 + B4A SINE B4 18 68 -224 7 1034 225 154 0 0 chr9 58906250 58906289 -65169883 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 7 1034 441 270 108 93 chr9 58906290 58906568 -65169604 + B4 SINE B4 1 282 -10 7 1034 198 347 186 17 chr9 58906825 58907016 -65169156 + L2c LINE L2 2981 3189 -186 7 1034 533 88 12 0 chr9 58908351 58908431 -65167741 + (TC)n Simple_repeat Simple_repeat 1 81 0 7 1034 228 239 0 0 chr9 58908594 58908640 -65167532 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1034 716 227 52 11 chr9 58908640 58908814 -65167358 - B3A SINE B2 -16 182 2 7 1034 207 0 0 0 chr9 58908926 58908949 -65167223 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 7 1034 818 243 39 65 chr9 58908996 58909225 -65166947 - ID_B1 SINE B4 0 224 2 7 1034 504 32 0 0 chr9 58909234 58909296 -65166876 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 7 1034 324 211 104 10 chr9 58909302 58909398 -65166774 - PB1D7 SINE Alu -7 113 9 7 1034 326 330 68 11 chr9 58911197 58911387 -65164785 + MER121 Unknown Unknown 57 257 -155 7 1034 210 37 0 0 chr9 58911420 58911447 -65164725 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 7 1034 191 36 36 0 chr9 58911489 58911517 -65164655 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1034 886 202 17 103 chr9 58911914 58912146 -65164026 - B3 SINE B2 0 216 5 7 1034 354 298 21 0 chr9 58912183 58912277 -65163895 - PB1D7 SINE Alu -19 101 6 7 1034 496 291 7 45 chr9 58912741 58912896 -65163276 - B3A SINE B2 -4 194 46 7 1034 377 339 81 0 chr9 58912881 58913005 -65163167 - B4A SINE B4 -142 150 17 7 1034 289 271 83 25 chr9 58913423 58913544 -65162628 - MIRb SINE MIR -54 214 87 7 1034 182 246 13 104 chr9 58913795 58913872 -65162300 - L3 LINE CR1 0 4489 4420 7 1034 211 338 24 24 chr9 58914151 58914233 -65161939 + MIR SINE MIR 40 121 -141 7 1034 236 289 35 0 chr9 58914261 58914348 -65161824 + MIR SINE MIR 121 207 -61 7 1034 1077 180 57 0 chr9 58916940 58917134 -65159038 - B3 SINE B2 -9 207 3 7 1034 324 0 0 0 chr9 58917661 58917697 -65158475 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1034 356 293 31 16 chr9 58918538 58918678 -65157494 - MIRb SINE MIR -93 175 36 7 1034 476 327 51 14 chr9 58918754 58918968 -65157204 + B4A SINE B4 2 223 -69 7 1034 207 292 0 15 chr9 58920742 58920808 -65155364 - MIRc SINE MIR -31 237 173 7 1034 684 275 153 40 chr9 58921180 58921506 -65154666 - MLT1A LTR MaLR -9 365 3 7 1034 260 262 92 72 chr9 58922066 58922218 -65153954 - L1MD3 LINE L1 0 7995 7841 7 1034 464 261 8 25 chr9 58922226 58922344 -65153828 + B4A SINE B4 7 122 -170 7 1034 892 228 17 0 chr9 58922469 58922649 -65153523 + B3 SINE B2 1 183 -33 7 1034 342 0 0 0 chr9 58922720 58922758 -65153414 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1034 250 297 33 11 chr9 58923530 58923622 -65152550 + L1MC LINE L1 5714 5807 -2075 7 1034 194 0 0 37 chr9 58923951 58923978 -65152194 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 7 1034 1056 67 0 0 chr9 58923978 58924113 -65152059 - B1_Mus1 SINE Alu -13 135 1 7 1034 21 0 0 0 chr9 58924146 58924167 -65152005 + AT_rich Low_complexity Low_complexity 1 21 0 7 1034 912 238 109 38 chr9 58924191 58924457 -65151715 - B4 SINE B4 0 292 8 7 1034 493 279 16 38 chr9 58924660 58924846 -65151326 + B3A SINE B2 14 195 -3 7 1034 378 256 194 77 chr9 58924907 58925182 -65150990 - ORR1E LTR MaLR -52 307 1 7 1034 452 255 38 25 chr9 58925502 58925659 -65150513 - L1M3 LINE L1 -709 5415 5257 7 1034 980 147 20 0 chr9 58925751 58925955 -65150217 - RLTR28 LTR ERVL 0 524 317 7 1034 654 172 0 0 chr9 58926038 58926166 -65150006 + CT-rich Low_complexity Low_complexity 2 129 0 7 1034 484 238 81 62 chr9 58926199 58926360 -65149812 - RSINE1 SINE B4 0 165 2 7 1034 229 181 81 27 chr9 58926546 58926620 -65149552 - L1M3 LINE L1 -1334 4806 4729 7 1034 21 36 0 0 chr9 58926724 58926752 -65149420 + AT_rich Low_complexity Low_complexity 1 28 0 7 1034 492 242 41 77 chr9 58926753 58926952 -65149220 - MTD LTR MaLR 0 419 125 7 1034 580 222 150 52 chr9 58926981 58927214 -65148958 + RMER21B LTR ERV1 312 567 -275 7 1034 619 138 63 31 chr9 58927267 58927394 -65148778 - MTD LTR MaLR -288 131 1 7 1034 210 170 21 0 chr9 58927424 58927471 -65148701 + A-rich Low_complexity Low_complexity 1 48 0 7 1034 239 217 28 28 chr9 58928066 58928137 -65148035 + MTEa LTR MaLR 309 379 0 7 1034 429 167 0 0 chr9 58928733 58928811 -65147361 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 1034 611 284 82 37 chr9 58930138 58930383 -65145789 - B4 SINE B4 0 292 37 7 1034 1815 173 72 11 chr9 58930383 58930745 -65145427 + MTD LTR MaLR 1 384 -35 7 1034 795 188 0 63 chr9 58930760 58930919 -65145253 + B1_Mur1 SINE Alu 1 149 0 7 1034 234 272 12 47 chr9 58931097 58931182 -65144990 + MamGypLTR2 LTR Gypsy 1108 1189 0 7 1034 378 0 0 0 chr9 58932155 58932197 -65143975 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1034 601 217 132 0 chr9 58932241 58932370 -65143802 - B1_Mur1 SINE Alu -2 147 2 7 1034 819 287 17 0 chr9 58932371 58932601 -65143571 - B4A SINE B4 -57 235 2 7 1034 2348 63 12 31 chr9 58932677 58933002 -65143170 - L1_Mus3 LINE L1 -3 6635 6317 7 1034 201 39 0 0 chr9 58933003 58933029 -65143143 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1034 531 245 0 0 chr9 58933043 58933149 -65143023 - PB1D10 SINE Alu -7 110 5 7 1034 532 335 152 44 chr9 58933175 58933675 -65142497 + L2a LINE L2 2509 3062 -357 7 1034 509 219 106 15 chr9 58933832 58933989 -65142183 + RLTR12B LTR ERVK 11 196 -372 7 1034 502 110 24 12 chr9 58933982 58934065 -65142107 + ORR1A3 LTR MaLR 243 326 0 7 1034 255 272 174 0 chr9 58934302 58934394 -65141778 + L2a LINE L2 3318 3425 -1 7 1034 237 132 0 0 chr9 58934552 58934590 -65141582 + (CACCAT)n Simple_repeat Simple_repeat 4 41 0 7 1034 268 367 122 5 chr9 58934856 58935045 -65141127 + MIR SINE MIR 34 244 -18 7 1034 474 274 30 0 chr9 58935660 58935795 -65140377 + RSINE1 SINE B4 4 142 -23 7 1034 186 43 0 0 chr9 58936054 58936077 -65140095 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 7 1034 4287 64 0 7 chr9 58936180 58936718 -65139454 - L1Md_F2 LINE L1 -12 6570 6037 7 1034 477 276 118 0 chr9 58937210 58937337 -65138835 + RSINE1 SINE B4 2 143 -22 7 1034 429 70 0 0 chr9 58937396 58937453 -65138719 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1034 696 182 64 21 chr9 58937730 58937870 -65138302 + B1_Mur1 SINE Alu 4 149 0 7 1034 752 230 14 0 chr9 58937911 58938050 -65138122 + B1_Mur2 SINE Alu 1 141 -8 7 1034 456 257 156 7 chr9 58938082 58938223 -65137949 - RSINE1 SINE B4 -2 163 2 7 1034 411 280 22 83 chr9 58938231 58938410 -65137762 + L1MC LINE L1 5381 5548 -576 7 1034 557 354 0 0 chr9 58938784 58938931 -65137241 - RSINE1 SINE B4 -17 148 2 7 1034 882 229 9 158 chr9 58939034 58939350 -65136822 - B4A SINE B4 -20 272 4 7 1034 1022 205 25 15 chr9 58940493 58940696 -65135476 - B3 SINE B2 -11 205 1 7 1034 292 192 0 0 chr9 58941093 58941145 -65135027 - B1F2 SINE Alu -42 107 56 7 1034 456 19 0 0 chr9 58941145 58941198 -65134974 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1034 24 67 0 0 chr9 58942617 58942662 -65133510 + AT_rich Low_complexity Low_complexity 1 45 0 7 1034 498 238 27 19 chr9 58943062 58943272 -65132900 - B4A SINE B4 -2 290 42 8 1034 449 207 0 0 chr9 58943349 58943431 -65132741 - ID4_ SINE ID 0 83 2 8 1034 21 36 0 0 chr9 58944270 58944298 -65131874 + AT_rich Low_complexity Low_complexity 1 28 0 8 1034 216 86 0 0 chr9 58945120 58945155 -65131017 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 8 1034 194 273 35 35 chr9 58946417 58946474 -65129698 + MER5A DNA MER1_type 10 66 -123 8 1034 395 255 26 39 chr9 58946596 58946751 -65129421 - MER5B DNA MER1_type -23 155 3 8 1034 762 208 58 6 chr9 58947626 58947800 -65128372 + ID_B1 SINE B4 35 217 -7 8 1034 399 262 10 0 chr9 58947958 58948061 -65128111 - L1MB8 LINE L1 -237 5941 5838 8 1034 390 21 0 0 chr9 58948109 58948156 -65128016 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1034 22 0 0 0 chr9 58948273 58948295 -65127877 + AT_rich Low_complexity Low_complexity 1 22 0 8 1034 225 0 0 0 chr9 58948298 58948323 -65127849 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1034 230 250 224 35 chr9 58948323 58948439 -65127733 - RSINE1 SINE B4 -26 139 2 8 1034 482 275 91 58 chr9 58948478 58948647 -65127525 - L1M4 LINE L1 -539 5625 5442 8 1034 432 0 0 0 chr9 58948647 58948695 -65127477 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1034 253 296 0 0 chr9 58948700 58948771 -65127401 - ID2 SINE ID -11 72 2 8 1034 482 275 91 58 chr9 58948771 58948838 -65127334 - L1M4 LINE L1 -723 5441 5375 8 1034 1366 270 158 45 chr9 58949123 58950038 -65126134 - L1M4 LINE L1 -1105 5041 4023 8 1034 425 321 196 30 chr9 58950066 58950438 -65125734 + MLT1D LTR MaLR 9 442 -63 8 1034 1136 285 69 21 chr9 58950450 58950645 -65125527 + RCHARR1 DNA MER1_type 4 206 -768 8 1034 3169 106 25 35 chr9 58950645 58951125 -65125047 - MT2C_Mm LTR ERVL 0 475 1 8 1034 1136 285 69 21 chr9 58951125 58951262 -65124910 + RCHARR1 DNA MER1_type 207 352 -622 8 1034 6831 54 1 1 chr9 58951334 58952904 -65123268 - L1Md_F LINE L1 -3892 1991 422 8 1034 271 274 27 0 chr9 58953054 58953127 -65123045 + GA-rich Low_complexity Low_complexity 3 77 0 8 1034 256 140 75 0 chr9 58953574 58953681 -65122491 + (TA)n Simple_repeat Simple_repeat 1 115 0 8 1034 1151 200 233 3 chr9 58953905 58954206 -65121966 + ORR1D1 LTR MaLR 1 370 -4 8 1034 1268 39 0 37 chr9 58954214 58954401 -65121771 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 1034 478 268 99 0 chr9 58954570 58954712 -65121460 + MTEb LTR MaLR 1 156 -223 8 1034 3662 143 56 26 chr9 58954738 58955432 -65120740 - RMER6D LTR ERVK -5 715 1 8 1034 1085 243 0 5 chr9 58955432 58955655 -65120517 + MTEb LTR MaLR 153 374 -5 8 1034 2051 194 13 0 chr9 58955869 58956265 -65119907 - MTD LTR MaLR -18 401 1 8 1034 266 283 142 0 chr9 58956341 58956447 -65119725 - MLT1B LTR MaLR -8 382 262 8 1034 1435 205 27 60 chr9 58956591 58956964 -65119208 + ORR1E LTR MaLR 1 379 0 8 1034 1002 278 63 93 chr9 58956964 58957449 -65118723 - L1MA8 LINE L1 -143 6148 5673 8 1034 1130 64 21 0 chr9 58957449 58957590 -65118582 + B1_Mus2 SINE Alu 2 145 -2 8 1034 1002 278 63 93 chr9 58957590 58957671 -65118501 - L1MA8 LINE L1 -619 5672 5599 8 1034 802 213 132 11 chr9 58957676 58957866 -65118306 - ID_B1 SINE B4 -7 217 5 8 1034 234 0 0 0 chr9 58957886 58957912 -65118260 + (TAA)n Simple_repeat Simple_repeat 2 27 0 8 1034 589 33 11 22 chr9 58957957 58958049 -65118123 + L1_Mus2 LINE L1 6476 6566 0 8 1034 360 0 0 0 chr9 58958094 58958134 -65118038 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 8 1034 300 195 92 0 chr9 58958144 58958231 -65117941 - PB1D7 SINE Alu -21 99 5 8 1034 542 266 60 65 chr9 58958251 58958518 -65117654 - L1MA8 LINE L1 -802 5489 5254 8 1034 596 310 25 0 chr9 58958518 58958676 -65117496 - RSINE1 SINE B4 0 165 4 8 1034 542 290 110 118 chr9 58958676 58958952 -65117220 - L1MA8 LINE L1 -887 5253 4937 8 1034 536 241 0 0 chr9 58958961 58959073 -65117099 - RSINE1 SINE B4 -29 136 25 8 1034 530 299 14 7 chr9 58959085 58959230 -65116942 - B4A SINE B4 -61 231 86 8 1034 4675 162 36 12 chr9 58959438 58960207 -65115965 + Lx5 LINE L1 6263 7050 0 8 1034 345 291 81 6 chr9 58960219 58960392 -65115780 - L1MA8 LINE L1 -1441 4699 4514 8 1034 408 298 37 0 chr9 58960477 58960665 -65115507 - L1MA8 LINE L1 -1634 4506 4312 8 1034 250 189 0 19 chr9 58960704 58960758 -65115414 - L1MA8 LINE L1 -2133 4010 3958 8 1034 2194 307 86 95 chr9 58960956 58962329 -65113843 + MLT1D-int LTR MaLR 7 1367 -4 8 1034 394 275 56 81 chr9 58962356 58962554 -65113618 + MLT1D LTR MaLR 27 219 -286 8 1034 1026 241 21 35 chr9 58962555 58962839 -65113333 + B4 SINE B4 3 282 -10 8 1034 528 30 0 0 chr9 58962866 58962932 -65113240 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 1034 791 245 47 132 chr9 58962958 58963254 -65112918 + MLT1D LTR MaLR 235 505 0 8 1034 390 21 0 0 chr9 58963296 58963343 -65112829 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1034 180 0 0 0 chr9 58963441 58963461 -65112711 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1034 710 243 138 0 chr9 58963461 58963642 -65112530 - ID_B1 SINE B4 -13 211 6 8 1034 293 296 0 0 chr9 58964067 58964155 -65112017 - L1M4 LINE L1 -3106 3040 2953 8 1034 917 286 88 24 chr9 58965022 58965544 -65110628 - L1ME1 LINE L1 -84 6095 5525 8 1034 404 300 157 41 chr9 58965579 58965797 -65110375 + B4 SINE B4 3 245 -47 8 1034 323 306 28 7 chr9 58965835 58965980 -65110192 - RMER15 LTR ERVL -92 483 336 8 1034 798 11 0 0 chr9 58966211 58966302 -65109870 + (CA)n Simple_repeat Simple_repeat 2 92 0 8 1034 248 288 17 0 chr9 58966335 58966394 -65109778 + B4 SINE B4 229 288 -4 8 1034 389 227 7 0 chr9 58966443 58966584 -65109588 + (CA)n Simple_repeat Simple_repeat 1 142 0 8 1034 599 279 52 7 chr9 58966611 58966980 -65109192 - L1ME1 LINE L1 -756 5423 5031 8 1034 39094 37 0 2 chr9 58966964 58973129 -65103043 - L1Md_T LINE L1 -2 6583 338 8 1034 219 225 35 35 chr9 58973432 58973547 -65102625 + (CATAA)n Simple_repeat Simple_repeat 1 115 0 8 1034 238 191 0 0 chr9 58974363 58974410 -65101762 - MLT1D LTR MaLR 0 505 459 8 1034 814 218 220 8 chr9 58974428 58974669 -65101503 + B4A SINE B4 1 292 0 8 1034 288 0 0 0 chr9 58974694 58974726 -65101446 + (CATA)n Simple_repeat Simple_repeat 4 35 0 8 1034 653 304 5 5 chr9 58974727 58974922 -65101250 - MLT1D LTR MaLR -52 453 259 8 1034 433 339 61 64 chr9 58975421 58975629 -65100543 - MLT1D LTR MaLR -115 296 99 8 1034 324 0 0 0 chr9 58975629 58975665 -65100507 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1034 433 339 61 64 chr9 58975665 58975752 -65100420 - MLT1D LTR MaLR -313 98 3 8 1034 566 282 87 41 chr9 58976414 58976555 -65099617 - B4 SINE B4 -14 278 78 8 1034 1213 219 120 15 chr9 58976555 58976889 -65099283 + ORR1D1 LTR MaLR 5 373 -1 8 1034 566 282 82 75 chr9 58976889 58977024 -65099148 - B4 SINE B4 -159 133 9 8 1034 1307 224 86 29 chr9 58979097 58979447 -65096725 + ORR1D2 LTR MaLR 1 370 0 8 1034 248 224 0 0 chr9 58979651 58979700 -65096472 - B4 SINE B4 -163 129 81 8 1034 260 87 42 28 chr9 58979703 58979774 -65096398 + A-rich Low_complexity Low_complexity 2 73 0 8 1034 233 266 0 99 chr9 58979774 58979845 -65096327 - B4 SINE B4 -216 76 13 8 1034 2292 134 23 0 chr9 58979880 58980222 -65095950 - Lx4A LINE L1 -617 6441 6092 8 1034 688 104 28 21 chr9 58980221 58980404 -65095768 + Lx4A LINE L1 6811 7049 -9 8 1034 21 0 0 0 chr9 58980404 58980425 -65095747 + AT_rich Low_complexity Low_complexity 1 21 0 8 1034 281 26 26 0 chr9 58980425 58980463 -65095709 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1034 201 74 0 0 chr9 58980459 58980486 -65095686 + (GGA)n Simple_repeat Simple_repeat 2 28 0 8 1035 28 29 0 0 chr9 58982947 58982982 -65093190 + AT_rich Low_complexity Low_complexity 1 35 0 8 1035 669 270 92 38 chr9 58983079 58983341 -65092831 + B4 SINE B4 12 287 -5 8 1035 462 18 0 0 chr9 58983341 58983396 -65092776 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1035 460 308 70 27 chr9 58983665 58984024 -65092148 + L1MC4 LINE L1 7009 7385 -657 8 1035 309 314 72 18 chr9 58984325 58984515 -65091657 + L1MC4 LINE L1 7603 7890 -152 8 1035 964 306 141 5 chr9 58984735 58984824 -65091348 - Lx8 LINE L1 -6 7467 7367 8 1035 639 71 0 0 chr9 58984824 58984909 -65091263 + (TCC)n Simple_repeat Simple_repeat 1 85 0 8 1035 964 306 141 5 chr9 58984909 58985252 -65090920 - Lx8 LINE L1 -107 7366 6976 8 1035 456 330 101 0 chr9 58985268 58985526 -65090646 + MER2 DNA MER2_type 2 285 -60 8 1035 690 231 123 88 chr9 58985583 58985781 -65090391 + B4A SINE B4 11 220 -72 8 1035 725 212 14 0 chr9 58985781 58985927 -65090245 + B1_Mur2 SINE Alu 1 148 -1 8 1035 690 231 123 88 chr9 58985927 58985979 -65090193 + B4A SINE B4 221 270 -22 8 1035 622 24 0 23 chr9 58985980 58986066 -65090106 + (CA)n Simple_repeat Simple_repeat 2 85 0 8 1035 22 0 0 0 chr9 58987466 58987488 -65088684 + AT_rich Low_complexity Low_complexity 1 22 0 8 1035 610 286 108 55 chr9 58987599 58987961 -65088211 - L1ME4a LINE L1 -27 6097 5717 8 1035 234 0 0 0 chr9 58988138 58988164 -65088008 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1035 558 0 0 0 chr9 58988164 58988225 -65087947 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 1035 275 298 0 156 chr9 58988245 58988412 -65087760 - B4A SINE B4 -16 276 136 8 1035 486 0 0 0 chr9 58989434 58989488 -65086684 + (GA)n Simple_repeat Simple_repeat 2 55 0 8 1035 641 244 192 5 chr9 58990029 58990243 -65085929 - B4A SINE B4 -4 288 35 8 1035 276 130 0 0 chr9 58990469 58990515 -65085657 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1035 180 339 0 0 chr9 58990996 58991052 -65085120 - L2c LINE L2 -75 3312 3257 8 1035 256 343 9 57 chr9 58992583 58992688 -65083484 + MLT1D LTR MaLR 3 102 -403 8 1035 372 111 0 0 chr9 58992813 58992876 -65083296 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1035 213 323 0 0 chr9 58992922 58992984 -65083188 - PB1D10 SINE Alu -19 98 37 8 1035 1141 68 18 0 chr9 58993018 58993181 -65082991 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 8 1035 258 349 0 0 chr9 58993231 58993314 -65082858 + ID4_ SINE ID 1 83 0 8 1035 484 228 62 8 chr9 58994491 58994619 -65081553 + L1MA5 LINE L1 6141 6275 -25 8 1035 282 95 0 0 chr9 58994621 58994663 -65081509 + ORR1A2 LTR MaLR 1 42 -287 8 1035 1452 90 30 0 chr9 58994665 58994865 -65081307 + MusHAL1 LINE L1 559 764 -1948 8 1035 2062 97 3 0 chr9 58994865 58995163 -65081009 + ORR1A2 LTR MaLR 29 327 0 8 1035 1214 48 7 0 chr9 58995193 58995339 -65080833 + B1_Mm SINE Alu 1 147 0 8 1035 611 285 174 30 chr9 58996849 58996907 -65079265 - MT2A LTR ERVL 0 533 463 8 1035 480 62 37 0 chr9 58996907 58996988 -65079184 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 8 1035 611 285 174 30 chr9 58996988 58997395 -65078777 - MT2A LTR ERVL -71 462 1 8 1035 527 288 25 71 chr9 58997454 58997652 -65078520 + B3A SINE B2 4 192 -6 8 1035 1277 230 88 17 chr9 58997751 58998105 -65078067 + MTEa LTR MaLR 1 379 0 8 1035 333 246 194 42 chr9 58998494 58998638 -65077534 - B3 SINE B2 -43 173 8 8 1035 931 135 0 20 chr9 58999025 58999176 -65076996 - B1_Mus1 SINE Alu 0 148 1 9 1035 210 71 0 0 chr9 58999384 58999412 -65076760 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1035 806 227 0 0 chr9 58999419 58999569 -65076603 - B3A SINE B2 -48 150 1 9 1035 205 329 14 42 chr9 58999582 58999725 -65076447 + (TATATG)n Simple_repeat Simple_repeat 3 141 0 9 1035 781 251 4 24 chr9 58999758 58999960 -65076212 - B3A SINE B2 -14 202 1 9 1035 210 71 0 0 chr9 59001415 59001443 -65074729 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1035 213 39 0 0 chr9 59001443 59001468 -65074704 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1035 1684 244 43 34 chr9 59001468 59001909 -65074263 + Lx8 LINE L1 6177 6621 -852 3 1035 510 207 99 0 chr9 59001928 59002049 -65074123 - ORR1D1 LTR MaLR -78 296 164 4 1035 240 111 0 43 chr9 59002042 59002089 -65074083 - B3 SINE B2 -171 45 1 5 1035 778 226 23 28 chr9 59002542 59002760 -65073412 - Ricksha_0 DNA MuDR -22 1711 1495 6 1035 822 178 2 0 chr9 59002920 59003424 -65072748 + (TG)n Simple_repeat Simple_repeat 1 505 0 7 1035 920 280 90 0 chr9 59003440 59003740 -65072432 - ORR1D2 LTR MaLR -13 357 31 8 1035 570 252 15 35 chr9 59003752 59003920 -65072252 - L1MA4 LINE L1 -375 5925 5762 9 1035 22 0 0 0 chr9 59003987 59004009 -65072163 + AT_rich Low_complexity Low_complexity 1 22 0 1 1035 1490 54 11 5 chr9 59004019 59004206 -65071966 + B2_Mm2 SINE B2 2 189 -6 1 1035 464 291 22 7 chr9 59004431 59004566 -65071606 + B1_Mur1 SINE Alu 8 144 -5 1 1035 255 274 0 0 chr9 59004612 59004674 -65071498 + RSINE1 SINE B4 73 134 -31 1 1035 266 192 65 2 chr9 59004661 59004740 -65071432 - B4A SINE B4 -76 89 2 1 1035 331 243 0 0 chr9 59004741 59004815 -65071357 - Ricksha_0 DNA MuDR -488 1238 1165 6 1035 247 255 120 20 chr9 59004820 59004920 -65071252 - PB1D10 SINE Alu 0 117 8 1 1035 463 213 82 18 chr9 59004931 59005041 -65071131 - Ricksha_0 DNA MuDR -557 1169 1053 6 1035 442 273 16 204 chr9 59005058 59005114 -65071058 - Ricksha_0 DNA MuDR -870 863 816 6 1035 686 174 13 83 chr9 59005114 59005130 -65071042 - B1_Mur2 SINE Alu 0 149 137 1 1035 221 0 0 33 chr9 59005130 59005160 -65071012 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1035 686 174 13 83 chr9 59005160 59005300 -65070872 - B1_Mur2 SINE Alu -13 136 4 1 1035 442 273 16 204 chr9 59005300 59005625 -65070547 - Ricksha_0 DNA MuDR -918 815 554 6 1035 503 282 8 0 chr9 59006164 59006288 -65069884 - Ricksha_0 DNA MuDR -1226 507 383 6 1035 929 268 42 18 chr9 59006309 59006594 -65069578 + B4A SINE B4 1 292 0 1 1035 453 275 259 58 chr9 59006778 59007122 -65069050 - MER31A LTR ERV1 -54 431 4 1 1035 411 274 118 17 chr9 59007219 59007457 -65068715 + MLT1K LTR MaLR 332 593 -2 2 1035 306 0 0 0 chr9 59007989 59008023 -65068149 + (CCA)n Simple_repeat Simple_repeat 1 34 0 2 1035 189 0 0 0 chr9 59008023 59008044 -65068128 + (CAA)n Simple_repeat Simple_repeat 3 23 0 2 1035 249 108 0 0 chr9 59008426 59008463 -65067709 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1035 222 37 0 0 chr9 59008474 59008501 -65067671 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1035 792 243 68 64 chr9 59008536 59008800 -65067372 - B4A SINE B4 -27 265 1 2 1035 1281 152 99 16 chr9 59009039 59009464 -65066708 + RLTR24 LTR ERV1 3 529 0 2 1035 268 314 139 35 chr9 59010087 59010288 -65065884 - MLT1C LTR MaLR -2 465 244 2 1035 922 280 13 54 chr9 59010319 59010617 -65065555 - B4A SINE B4 -6 286 1 2 1035 737 218 201 0 chr9 59010642 59010821 -65065351 - B3 SINE B2 0 216 2 2 1035 260 176 0 19 chr9 59011921 59011973 -65064199 - L1MB7 LINE L1 0 6184 6134 3 1035 10141 49 16 11 chr9 59012068 59012623 -65063549 - L1VL4 LINE L1 -1335 2224 1666 3 1035 207 0 0 0 chr9 59012623 59012646 -65063526 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1035 1157 70 0 0 chr9 59012649 59012792 -65063380 - B1_Mus1 SINE Alu -5 143 1 3 1035 10141 69 12 8 chr9 59012792 59014240 -65061932 - L1VL4 LINE L1 -1894 1665 207 3 1035 924 270 26 4 chr9 59014240 59014467 -65061705 - B4A SINE B4 -60 232 1 3 1035 1455 266 40 73 chr9 59014484 59014947 -65061225 - L1MB7 LINE L1 -77 6107 5648 3 1035 963 212 40 20 chr9 59014947 59015149 -65061023 - B3 SINE B2 -10 206 1 3 1035 1455 266 40 73 chr9 59015149 59015261 -65060911 - L1MB7 LINE L1 -537 5647 5551 3 1035 279 278 20 49 chr9 59015396 59015498 -65060674 + MER5A DNA MER1_type 83 181 -8 3 1035 456 255 20 0 chr9 59016534 59016636 -65059536 + B4A SINE B4 1 104 -188 3 1035 900 127 7 0 chr9 59016734 59016876 -65059296 - ORR1C2 LTR MaLR 0 384 242 3 1035 315 0 0 0 chr9 59016880 59016915 -65059257 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1035 656 151 16 0 chr9 59016932 59017058 -65059114 - ORR1C2 LTR MaLR -246 128 1 3 1035 984 239 10 0 chr9 59017129 59017338 -65058834 - B3 SINE B2 -5 211 1 4 1035 603 277 56 94 chr9 59017422 59017709 -65058463 - B4 SINE B4 -14 278 3 4 1035 225 229 13 67 chr9 59017968 59018043 -65058129 + L1MC5 LINE L1 7763 7833 -128 4 1035 912 255 5 41 chr9 59018059 59018280 -65057892 - ID_B1 SINE B4 -8 216 4 4 1035 718 269 40 0 chr9 59018362 59018481 -65057691 - MER2 DNA MER2_type -42 303 182 4 1035 2633 134 40 0 chr9 59018481 59018884 -65057288 + MTC LTR MaLR 3 421 0 4 1035 718 269 40 0 chr9 59018884 59018987 -65057185 - MER2 DNA MER2_type -164 181 73 4 1035 633 49 0 0 chr9 59018988 59019069 -65057103 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1035 453 289 23 31 chr9 59019274 59019501 -65056671 - L1MC4a LINE L1 -2042 5840 5614 4 1035 289 298 24 47 chr9 59019627 59019754 -65056418 - MER5A DNA MER1_type -59 130 7 4 1035 235 274 12 23 chr9 59020049 59020135 -65056037 - MLT1N2 LTR MaLR -3 559 475 4 1035 445 254 0 39 chr9 59020137 59020264 -65055908 + ID_B1 SINE B4 85 206 -18 5 1035 235 231 0 0 chr9 59020268 59020320 -65055852 + PB1D10 SINE Alu 52 103 -14 5 1035 486 0 0 0 chr9 59020340 59020394 -65055778 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1035 923 236 80 21 chr9 59021084 59021322 -65054850 + B4 SINE B4 37 288 -4 5 1035 1609 180 146 3 chr9 59021502 59021864 -65054308 - MTD LTR MaLR -5 414 1 5 1035 1071 151 38 84 chr9 59021903 59022141 -65054031 + RMER19B LTR ERVK 1 227 -675 5 1035 2499 137 87 42 chr9 59022163 59022690 -65053482 + RMER19B LTR ERVK 340 890 -12 5 1035 397 341 66 23 chr9 59022997 59023300 -65052872 - LTR16B1 LTR ERVL -66 414 99 5 1035 2612 35 45 0 chr9 59024396 59024709 -65051463 - IAPLTR2b LTR ERVK 0 327 1 5 1035 1154 238 113 21 chr9 59024715 59025041 -65051131 - ORR1E LTR MaLR 0 359 4 5 1035 290 294 167 17 chr9 59025126 59025306 -65050866 - MamGypLTR2b LTR Gypsy -208 714 508 5 1035 1733 218 51 14 chr9 59026313 59026666 -65049506 + Lx6 LINE L1 6784 7149 -311 6 1035 627 156 102 0 chr9 59026661 59026789 -65049383 - RMER1C Other Other -1 1341 1201 6 1035 1277 76 0 13 chr9 59026789 59027015 -65049157 + (GGGAA)n Simple_repeat Simple_repeat 1 222 0 6 1035 1473 178 111 86 chr9 59027015 59027038 -65049134 - RMER1C Other Other -119 1223 1200 6 1035 1338 73 0 0 chr9 59027038 59027217 -65048955 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 6 1035 1473 178 111 86 chr9 59027217 59027389 -65048783 - RMER1C Other Other -143 1199 1040 6 1035 2000 82 7 4 chr9 59027389 59027660 -65048512 + L1_Mus3 LINE L1 6362 6633 -5 6 1035 1473 178 111 86 chr9 59027660 59027870 -65048302 - RMER1C Other Other -303 1039 807 6 1035 1209 41 0 14 chr9 59027888 59028035 -65048137 - B1_Mm SINE Alu -2 145 1 6 1035 1263 94 0 0 chr9 59028085 59028265 -65047907 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1035 405 102 0 0 chr9 59028265 59028324 -65047848 + (TTCTCC)n Simple_repeat Simple_repeat 5 63 0 6 1035 1173 222 21 12 chr9 59028324 59028566 -65047606 + Lx6 LINE L1 7196 7439 -21 6 1035 631 264 57 102 chr9 59028613 59028852 -65047320 + B4 SINE B4 1 228 -64 6 1035 480 250 213 48 chr9 59028852 59029101 -65047071 + B4A SINE B4 1 290 -2 6 1035 238 135 132 19 chr9 59029523 59029576 -65046596 - L1M3 LINE L1 -345 5844 5786 7 1035 475 330 49 22 chr9 59029630 59029856 -65046316 + B4A SINE B4 1 232 -60 7 1035 198 0 0 0 chr9 59029917 59029939 -65046233 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1035 399 292 67 6 chr9 59030494 59030673 -65045499 + LTR78 LTR ERV1 950 1139 -165 7 1035 820 242 63 55 chr9 59030896 59031167 -65045005 + B4 SINE B4 2 274 -18 7 1035 456 93 0 0 chr9 59031195 59031270 -65044902 + (TC)n Simple_repeat Simple_repeat 1 75 0 7 1035 432 0 0 0 chr9 59031508 59031556 -65044616 + (CAGA)n Simple_repeat Simple_repeat 2 49 0 7 1035 278 159 0 24 chr9 59031575 59031659 -65044513 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 7 1035 576 77 0 0 chr9 59031666 59031744 -65044428 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 1035 226 220 0 0 chr9 59031744 59031794 -65044378 + GA-rich Low_complexity Low_complexity 2 51 0 7 1035 266 184 13 38 chr9 59031796 59031875 -65044297 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 8 1035 294 162 0 0 chr9 59031899 59031973 -65044199 + CT-rich Low_complexity Low_complexity 2 75 0 8 1035 352 274 39 0 chr9 59032278 59032380 -65043792 - L1MA6 LINE L1 -112 6188 6083 8 1035 395 274 11 0 chr9 59033257 59033352 -65042820 + B3A SINE B2 1 96 -102 8 1035 378 0 0 0 chr9 59033774 59033816 -65042356 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1035 408 187 215 0 chr9 59033816 59033923 -65042249 + B3 SINE B2 86 215 -1 8 1035 490 303 126 51 chr9 59034114 59034448 -65041724 + L1ME2 LINE L1 5705 6063 -110 8 1035 217 138 24 36 chr9 59034485 59034568 -65041604 + (CA)n Simple_repeat Simple_repeat 2 83 0 8 1035 791 280 64 82 chr9 59034678 59034958 -65041214 - B4 SINE B4 -16 276 2 8 1035 903 142 0 0 chr9 59035000 59035248 -65040924 + (CA)n Simple_repeat Simple_repeat 1 248 0 8 1035 364 358 139 9 chr9 59035935 59036279 -65039893 + LTR84a LTR ERVL 19 407 -350 8 1035 191 270 108 0 chr9 59036596 59036670 -65039502 + MIRb SINE MIR 130 211 -57 9 1035 1925 122 68 81 chr9 59037599 59037984 -65038188 - ORR1B1 LTR MaLR -14 380 1 9 1035 441 66 0 0 chr9 59038025 59038086 -65038086 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 1035 1774 183 99 17 chr9 59039450 59039795 -65036377 - ORR1D1 LTR MaLR 0 374 2 9 1035 719 254 12 0 chr9 59039804 59039962 -65036210 + B4 SINE B4 118 277 -15 9 1035 234 0 0 0 chr9 59039962 59039988 -65036184 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1035 2640 136 37 24 chr9 59040002 59040462 -65035710 + RMER4A LTR ERVK 1 466 0 9 1035 324 188 0 0 chr9 59040750 59040814 -65035358 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1035 1775 257 81 48 chr9 59040815 59041446 -65034726 + L1MC2 LINE L1 5675 6314 -30 9 1035 382 289 0 0 chr9 59041898 59041993 -65034179 + B4 SINE B4 1 95 -197 9 1035 624 292 14 0 chr9 59041993 59042137 -65034035 + RSINE1 SINE B4 3 148 -17 1 1035 741 288 42 39 chr9 59042261 59042546 -65033626 + B4A SINE B4 1 286 -6 1 1035 186 191 0 0 chr9 59042624 59042671 -65033501 + GA-rich Low_complexity Low_complexity 1 47 0 1 1035 796 227 82 14 chr9 59042725 59042940 -65033232 + B4A SINE B4 1 230 -62 1 1035 565 285 78 88 chr9 59042940 59043144 -65033028 + B3A SINE B2 2 203 -13 1 1035 858 101 16 0 chr9 59043263 59043392 -65032780 + B1_Mur3 SINE Alu 18 148 -1 1 1035 249 33 0 0 chr9 59043416 59043446 -65032726 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 1035 258 293 27 0 chr9 59043505 59043580 -65032592 - ID4_ SINE ID -6 77 1 1 1035 628 209 75 0 chr9 59043860 59043994 -65032178 - B1_Mus1 SINE Alu 0 148 5 1 1035 478 235 20 0 chr9 59044069 59044171 -65032001 - RSINE1 SINE B4 -60 105 2 1 1035 210 164 0 37 chr9 59044985 59045067 -65031105 + G-rich Low_complexity Low_complexity 1 79 0 1 1035 447 177 25 12 chr9 59045249 59045329 -65030843 + ID4_ SINE ID 1 81 -2 1 1035 398 346 44 34 chr9 59046644 59046937 -65029235 - LTR16A1 LTR ERVL -153 303 8 1 1035 24 0 0 0 chr9 59046986 59047010 -65029162 + AT_rich Low_complexity Low_complexity 1 24 0 1 1035 667 261 13 0 chr9 59047045 59047198 -65028974 - RSINE1 SINE B4 -1 164 10 1 1035 674 267 93 47 chr9 59047697 59047976 -65028196 - MER121 Unknown Unknown -22 390 99 1 1035 225 0 0 0 chr9 59048250 59048275 -65027897 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1035 322 265 61 0 chr9 59048324 59048422 -65027750 - B4A SINE B4 -27 265 162 1 1035 224 195 0 0 chr9 59048461 59048502 -65027670 - B4A SINE B4 -207 85 45 1 1035 1550 146 32 7 chr9 59048649 59048931 -65027241 + ORR1B1 LTR MaLR 100 388 -6 1 1035 252 232 48 24 chr9 59049746 59049760 -65026412 - B4 SINE B4 -206 86 1 1 1035 390 171 0 0 chr9 59049760 59049830 -65026342 - B3 SINE B2 -146 70 1 1 1035 545 308 32 26 chr9 59049933 59050110 -65026062 + B4A SINE B4 102 283 -9 1 1035 189 0 0 0 chr9 59050110 59050131 -65026041 + (TGGA)n Simple_repeat Simple_repeat 2 22 0 1 1035 545 308 32 26 chr9 59050131 59050143 -65026029 + B4A SINE B4 284 292 0 1 1035 198 342 51 0 chr9 59051015 59051094 -65025078 - MIR SINE MIR -75 133 51 1 1035 741 267 51 31 chr9 59051681 59051936 -65024236 + L1MEc LINE L1 491 750 -5650 1 1035 255 156 0 0 chr9 59052201 59052246 -65023926 - L1P5 LINE L1 -318 5838 5794 1 1035 450 0 0 0 chr9 59052261 59052311 -65023861 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1035 878 155 0 0 chr9 59052347 59052489 -65023683 - B1_Mur4 SINE Alu 0 150 9 1 1035 365 214 0 127 chr9 59052392 59052510 -65023662 - MT2B LTR ERVL -344 257 155 1 1035 728 293 20 12 chr9 59052515 59052767 -65023405 - L1M2 LINE L1 -491 5800 5547 1 1035 950 145 0 0 chr9 59052870 59053008 -65023164 + B1_Mus2 SINE Alu 2 139 -8 1 1035 461 17 17 0 chr9 59053008 59053066 -65023106 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1 1035 292 216 125 9 chr9 59053092 59053204 -65022968 + L1MEc LINE L1 871 995 -5405 1 1035 1933 323 74 19 chr9 59053220 59054032 -65022140 + Lx7 LINE L1 6340 7208 -265 1 1035 513 0 0 0 chr9 59054032 59054089 -65022083 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1035 1501 330 44 30 chr9 59054089 59054241 -65021931 + Lx7 LINE L1 7209 7350 -123 1 1035 407 242 139 6 chr9 59054338 59054504 -65021668 + L1MEc LINE L1 996 1183 -5217 1 1035 320 283 123 0 chr9 59054589 59054695 -65021477 - B1F SINE Alu -30 119 1 1 1035 853 306 15 15 chr9 59054746 59055018 -65021154 + B4A SINE B4 1 272 -20 1 1035 414 0 0 0 chr9 59055028 59055074 -65021098 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1035 286 274 0 0 chr9 59055217 59055279 -65020893 - ID4_ SINE ID -17 66 5 1 1035 383 276 30 7 chr9 59055291 59055426 -65020746 - B1F SINE Alu -7 142 5 1 1035 844 230 43 24 chr9 59055565 59055774 -65020398 + B3 SINE B2 1 213 -3 1 1035 275 290 37 49 chr9 59055854 59056017 -65020155 + L1MEc LINE L1 2245 2405 -3995 1 1035 662 308 12 77 chr9 59056022 59056268 -65019904 + MLT2B3 LTR ERVL 269 498 -56 1 1035 594 24 36 0 chr9 59056268 59056352 -65019820 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 1 1035 2269 161 23 5 chr9 59056355 59056742 -65019430 - ORR1B1 LTR MaLR 0 394 1 1 1035 491 82 14 0 chr9 59056762 59056835 -65019337 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 1 1035 280 274 61 114 chr9 59057473 59057828 -65018344 - MLT1C LTR MaLR -2 465 62 1 1035 529 297 146 10 chr9 59057856 59058262 -65017910 + L1MEc LINE L1 2473 2934 -3385 1 1035 709 235 26 0 chr9 59058364 59058517 -65017655 - B3A SINE B2 -41 157 1 1 1035 308 279 124 9 chr9 59058518 59058623 -65017549 - PB1D10 SINE Alu 0 117 1 1 1035 389 244 51 68 chr9 59058713 59058890 -65017282 + L1MEc LINE L1 2923 3095 -3224 1 1035 1621 47 0 0 chr9 59058890 59059083 -65017089 + B2_Mm1a SINE B2 1 193 0 1 1035 303 261 35 113 chr9 59059083 59059108 -65017064 + L1MEc LINE L1 3089 3109 -3210 1 1035 23 54 0 0 chr9 59059206 59059243 -65016929 + AT_rich Low_complexity Low_complexity 1 37 0 1 1035 296 235 167 52 chr9 59059299 59059431 -65016741 + L1MD LINE L1 3047 3203 -2943 1 1035 727 237 103 0 chr9 59059431 59059625 -65016547 + B3 SINE B2 1 214 -2 1 1035 296 235 167 52 chr9 59059625 59059743 -65016429 + L1MD LINE L1 3204 3325 -2821 1 1035 230 271 56 28 chr9 59059770 59059842 -65016330 - ID2 SINE ID -7 76 3 1 1035 314 308 152 31 chr9 59059845 59060136 -65016036 + L1MEc LINE L1 3632 3955 -2364 1 1035 682 235 35 17 chr9 59060255 59060428 -65015744 + MLT1A0 LTR MaLR 168 343 -22 1 1035 834 294 107 49 chr9 59060508 59060940 -65015232 - Lx8 LINE L1 0 7473 7017 1 1035 207 100 0 0 chr9 59060962 59060992 -65015180 + (TTG)n Simple_repeat Simple_repeat 3 32 0 1 1035 4773 163 48 37 chr9 59061012 59061903 -65014269 - Lx5 LINE L1 0 7050 6150 1 1035 3438 143 59 9 chr9 59061903 59062603 -65013569 + Lx5 LINE L1 5209 5955 -1095 1 1035 1199 233 41 94 chr9 59062619 59062960 -65013212 - Lx8 LINE L1 -489 6984 6662 1 1035 595 298 124 28 chr9 59062946 59063405 -65012767 + L1MD LINE L1 3896 4398 -1748 1 1035 1268 188 0 0 chr9 59063477 59063685 -65012487 + B3 SINE B2 1 208 -8 1 1035 295 191 0 0 chr9 59063687 59063734 -65012438 + MurSatRep1 Unknown Unknown 235 281 -1856 1 1035 422 269 135 52 chr9 59063761 59064028 -65012144 + L1MD LINE L1 4442 4730 -1416 1 1035 382 196 0 121 chr9 59064600 59064716 -65011456 + B4A SINE B4 189 290 -2 1 1035 530 240 0 23 chr9 59064891 59065031 -65011141 + PB1D7 SINE Alu 9 135 -15 1 1035 375 330 23 53 chr9 59065128 59065209 -65010963 + L1MC LINE L1 4985 5065 -1081 1 1035 1362 65 15 51 chr9 59065209 59065404 -65010768 + B2_Mm2 SINE B2 1 188 -7 1 1035 375 330 23 53 chr9 59065404 59065664 -65010508 + L1MC LINE L1 5066 5316 -830 1 1035 283 255 93 47 chr9 59065670 59065777 -65010395 - PB1D10 SINE Alu 0 117 6 1 1035 338 287 157 6 chr9 59065790 59065962 -65010210 + L1ME2 LINE L1 5319 5516 -657 1 1035 855 288 123 57 chr9 59065984 59066529 -65009643 + L1ME2 LINE L1 5582 6162 -2 1 1035 275 305 20 28 chr9 59066685 59066820 -65009352 - MIRc SINE MIR -112 156 21 1 1035 431 274 109 16 chr9 59067609 59067802 -65008370 - MLT1D LTR MaLR -7 498 288 1 1035 353 335 34 68 chr9 59067823 59068028 -65008144 - MLT1D LTR MaLR -290 215 18 1 1035 1009 207 5 10 chr9 59068102 59068307 -65007865 + B3 SINE B2 4 207 -9 1 1035 332 285 95 38 chr9 59068387 59068558 -65007614 - B4A SINE B4 -109 183 3 1 1035 612 0 0 0 chr9 59068785 59068853 -65007319 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 1 1035 333 0 0 0 chr9 59068913 59068950 -65007222 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1035 579 74 0 0 chr9 59068950 59069030 -65007142 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1035 690 224 121 62 chr9 59069075 59069332 -65006840 - B4A SINE B4 -19 273 2 1 1035 238 295 16 0 chr9 59069708 59069769 -65006403 + Charlie12 DNA MER1_type 7 68 -2805 1 1035 984 264 89 0 chr9 59070111 59070391 -65005781 + MTEa LTR MaLR 1 305 -74 1 1035 423 0 0 0 chr9 59071040 59071087 -65005085 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1035 819 259 25 15 chr9 59071376 59071576 -65004596 - ID_B1 SINE B4 -7 217 16 1 1035 337 169 30 30 chr9 59071623 59071690 -65004482 - MLT1F2 LTR MaLR -426 134 68 1 1035 1504 32 26 21 chr9 59072172 59072203 -65003969 - B2_Mm1a SINE B2 0 193 161 1 1035 243 0 0 0 chr9 59072203 59072230 -65003942 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1035 1504 32 26 21 chr9 59072230 59072389 -65003783 - B2_Mm1a SINE B2 -33 160 2 1 1035 687 210 0 68 chr9 59072466 59072614 -65003558 + ID_B1 SINE B4 56 193 -31 1 1035 237 160 0 107 chr9 59074128 59074184 -65001988 + MER5B DNA MER1_type 128 177 -1 1 1035 632 238 0 0 chr9 59074374 59074496 -65001676 + RSINE1 SINE B4 3 124 -41 1 1035 368 40 20 0 chr9 59074497 59074547 -65001625 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1035 209 240 40 0 chr9 59074552 59074602 -65001570 - L2a LINE L2 -91 3335 3284 1 1035 693 163 30 0 chr9 59075036 59075171 -65001001 - B1_Mur4 SINE Alu -2 148 10 1 1035 486 212 46 99 chr9 59075171 59075187 -65000985 - B4 SINE B4 -68 223 81 1 1035 4748 118 39 12 chr9 59075479 59076197 -64999975 + RMER19A LTR ERVK 1 737 0 1 1035 24 0 0 0 chr9 59076347 59076371 -64999801 + AT_rich Low_complexity Low_complexity 1 24 0 1 1035 699 202 133 0 chr9 59076429 59076587 -64999585 - B3 SINE B2 -37 179 1 1 1035 21 36 0 0 chr9 59076643 59076671 -64999501 + AT_rich Low_complexity Low_complexity 1 28 0 1 1035 277 227 68 0 chr9 59076673 59076761 -64999411 + MER58B DNA MER1_type 93 186 -155 1 1035 548 226 94 6 chr9 59076800 59076960 -64999212 - MER2 DNA MER2_type -34 311 138 1 1035 249 308 25 13 chr9 59077537 59077616 -64998556 + B4A SINE B4 3 82 -210 1 1035 209 367 98 25 chr9 59077856 59078060 -64998112 + MIR SINE MIR 36 254 -8 1 1035 570 309 112 62 chr9 59078514 59078667 -64997505 - B4A SINE B4 -1 291 125 1 1035 351 0 0 0 chr9 59078667 59078706 -64997466 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1035 570 309 112 62 chr9 59078706 59078828 -64997344 - B4A SINE B4 -168 124 2 1 1035 254 254 29 73 chr9 59080105 59080241 -64995931 - L1MC4 LINE L1 -1337 6705 6576 1 1035 594 41 0 0 chr9 59080488 59080561 -64995611 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1035 290 284 23 0 chr9 59080954 59081042 -64995130 + L1MB5 LINE L1 4014 4103 -2043 2 1035 308 202 252 9 chr9 59081160 59081275 -64994897 + L1MB5 LINE L1 5093 5235 -911 2 1035 926 268 56 126 chr9 59081307 59081809 -64994363 + L1MB5 LINE L1 5347 5818 -356 2 1035 932 185 0 0 chr9 59081809 59081955 -64994217 + B1_Mus1 SINE Alu 1 146 -2 2 1035 926 273 60 132 chr9 59081955 59082285 -64993887 + L1MB5 LINE L1 5819 6104 -74 2 1035 429 276 197 0 chr9 59082375 59082527 -64993645 + B3A SINE B2 1 182 -16 2 1035 387 0 0 0 chr9 59082548 59082591 -64993581 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1035 475 356 39 25 chr9 59082609 59082894 -64993278 + B4A SINE B4 1 289 -3 2 1035 240 314 44 19 chr9 59083183 59083342 -64992830 + L2 LINE L2 2336 2498 -921 2 1035 255 61 0 0 chr9 59083595 59083628 -64992544 + (CCCCCT)n Simple_repeat Simple_repeat 3 35 0 2 1035 5749 51 42 5 chr9 59083666 59084431 -64991741 + MusHAL1 LINE L1 1869 2661 -51 2 1035 267 322 75 53 chr9 59085161 59085348 -64990824 + B4A SINE B4 52 242 -50 2 1035 513 61 0 35 chr9 59085445 59085530 -64990642 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1035 267 279 89 16 chr9 59086041 59086165 -64990007 + L1MEc LINE L1 91 223 -6177 2 1035 945 249 20 56 chr9 59086220 59086522 -64989650 + B4A SINE B4 2 292 0 2 1035 329 291 9 88 chr9 59086593 59086706 -64989466 + RSINE1 SINE B4 16 119 -46 2 1035 405 0 0 0 chr9 59086713 59086758 -64989414 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1035 1386 310 146 41 chr9 59086904 59086971 -64989201 + L1MA10 LINE L1 3083 3160 -2980 2 1035 441 178 256 0 chr9 59086971 59087061 -64989111 + PB1D9 SINE Alu 1 113 -7 2 1035 1386 310 146 41 chr9 59087061 59087912 -64988260 + L1MA10 LINE L1 3161 4107 -2033 2 1035 366 23 0 0 chr9 59087912 59087955 -64988217 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2 1035 1717 289 142 26 chr9 59087955 59088968 -64987204 + L1MA10 LINE L1 4115 5245 -901 2 1035 422 205 116 43 chr9 59089305 59089507 -64986665 + L1MA10 LINE L1 5246 5454 -725 2 1035 1082 121 11 37 chr9 59089524 59089557 -64986615 - B2_Mm2 SINE B2 -9 186 160 2 1035 255 61 0 0 chr9 59089557 59089590 -64986582 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 1035 1082 121 11 37 chr9 59089590 59089745 -64986427 - B2_Mm2 SINE B2 -36 159 3 2 1035 386 20 20 0 chr9 59089792 59089843 -64986329 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1035 1195 206 32 38 chr9 59089941 59090284 -64985888 - RLTR15 LTR ERVK -18 341 1 2 1035 344 248 57 20 chr9 59090300 59090451 -64985721 + L1MA10 LINE L1 5819 5977 -202 2 1035 891 19 0 0 chr9 59090543 59090648 -64985524 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1035 574 200 96 0 chr9 59090650 59090785 -64985387 - B3A SINE B2 -48 150 3 2 1035 567 159 0 0 chr9 59090894 59091007 -64985165 + CT-rich Low_complexity Low_complexity 2 114 0 2 1035 243 0 0 0 chr9 59091009 59091036 -64985136 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1035 432 313 105 60 chr9 59091042 59091290 -64984882 + MLT1F2 LTR MaLR 287 545 -15 2 1035 351 241 57 39 chr9 59091336 59091500 -64984672 + L1MA10 LINE L1 6175 6321 -13 2 1035 234 0 0 0 chr9 59091756 59091782 -64984390 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2 1035 236 330 179 0 chr9 59091836 59091942 -64984230 - MER2B DNA MER2_type -24 312 188 2 1035 709 249 105 49 chr9 59092200 59092582 -64983590 + RLTR11B LTR ERVK 1 414 -27 2 1035 254 330 182 0 chr9 59092610 59092786 -64983386 - B4A SINE B4 -82 210 3 2 1035 305 298 99 7 chr9 59092849 59092991 -64983181 - L2 LINE L2 -1520 1899 1745 2 1035 434 259 140 0 chr9 59093190 59093333 -64982839 + Charlie20a DNA Charlie 153 315 -492 2 1035 198 0 0 0 chr9 59093353 59093375 -64982797 + (G)n Simple_repeat Simple_repeat 1 22 0 2 1035 226 284 8 41 chr9 59093412 59093533 -64982639 + Charlie20a DNA Charlie 429 545 -262 2 1035 849 257 68 22 chr9 59093892 59094170 -64982002 + B4A SINE B4 1 291 -1 2 1035 227 295 135 61 chr9 59095071 59095219 -64980953 - MER102a DNA MER1_type -69 261 103 2 1035 1032 244 64 19 chr9 59095778 59096137 -64980035 + L1_Rod LINE L1 464 838 -6334 2 1035 215 336 33 27 chr9 59097363 59097513 -64978659 - L2a LINE L2 -13 3413 3263 2 1035 647 239 135 61 chr9 59097643 59097888 -64978284 - B4 SINE B4 -28 264 2 2 1035 703 230 40 17 chr9 59098195 59098372 -64977800 + B3 SINE B2 32 212 -4 2 1035 389 292 96 14 chr9 59098545 59098691 -64977481 + RSINE1 SINE B4 2 159 -6 2 1035 757 350 152 15 chr9 59098704 59099286 -64976886 + MLT1-int LTR MaLR 279 983 -506 2 1035 5141 35 0 0 chr9 59099303 59099897 -64976275 + L1Md_T LINE L1 5989 6582 0 2 1035 328 196 71 20 chr9 59099952 59100051 -64976121 + B3A SINE B2 19 122 -76 2 1035 369 0 0 0 chr9 59100054 59100095 -64976077 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1035 207 0 0 0 chr9 59100095 59100117 -64976055 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1035 26 30 0 0 chr9 59100117 59100150 -64976022 + AT_rich Low_complexity Low_complexity 1 33 0 2 1035 299 320 31 62 chr9 59100293 59100450 -64975722 - MLT1H-int LTR MaLR -165 1244 1093 2 1035 806 246 157 39 chr9 59100450 59100786 -64975386 - MTD LTR MaLR 0 419 44 2 1035 1523 179 46 28 chr9 59100786 59101113 -64975059 + ORR1C2 LTR MaLR 1 333 -51 2 1035 819 130 15 8 chr9 59101121 59101253 -64974919 + B1_Mur4 SINE Alu 12 144 -6 2 1035 1227 48 0 0 chr9 59101258 59101404 -64974768 + B1_Mus1 SINE Alu 1 146 -2 2 1035 1074 20 39 0 chr9 59101404 59101557 -64974615 + (GA)n Simple_repeat Simple_repeat 2 160 0 2 1035 260 152 65 0 chr9 59101557 59101603 -64974569 + ORR1C2 LTR MaLR 336 384 0 2 1035 342 323 58 29 chr9 59101657 59101794 -64974378 - MLT1H-int LTR MaLR -321 1088 948 2 1035 418 200 99 50 chr9 59101813 59101934 -64974238 - B1F1 SINE Alu 0 149 23 2 1035 225 273 116 62 chr9 59101824 59101953 -64974219 - B4A SINE B4 -73 219 84 2 1035 745 325 115 38 chr9 59101954 59102008 -64974164 - MLT1H-int LTR MaLR -452 957 904 2 1035 405 0 0 0 chr9 59102008 59102053 -64974119 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1035 745 326 151 27 chr9 59102053 59102853 -64973319 - MLT1H-int LTR MaLR -506 903 1 2 1035 324 48 0 0 chr9 59103077 59103119 -64973053 + (GGCTG)n Simple_repeat Simple_repeat 3 44 0 2 1035 2045 143 68 3 chr9 59104771 59105122 -64971050 - ORR1D1 LTR MaLR 0 374 1 2 1035 5511 171 64 43 chr9 59105122 59106359 -64969813 - ORR1D1-int LTR MaLR 0 1370 108 2 1035 261 206 184 40 chr9 59106359 59106435 -64969737 - ORR1D1-int LTR MaLR -1170 200 114 2 1035 291 190 195 37 chr9 59106437 59106519 -64969653 - ORR1D1-int LTR MaLR -1168 202 108 2 1035 760 173 42 52 chr9 59106506 59106707 -64969465 - ORR1D1-int LTR MaLR -909 189 1 2 1035 1323 192 156 9 chr9 59106708 59107034 -64969138 - ORR1D1 LTR MaLR 0 374 1 2 1035 324 0 0 0 chr9 59107365 59107401 -64968771 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1035 2752 149 53 12 chr9 59108665 59109174 -64966998 - RMER5 LTR ERV1 -4 530 1 2 1035 495 269 58 31 chr9 59109411 59109732 -64966440 + RMER17C LTR ERVK 1 364 -46 2 1035 314 256 85 0 chr9 59109753 59109835 -64966337 - MER57A-int LTR ERV1 -275 5912 5824 2 1035 495 134 0 0 chr9 59110198 59110280 -64965892 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1035 894 203 52 31 chr9 59110295 59110524 -64965648 + LTR85c LTR Gypsy? 23 256 -567 2 1035 678 208 27 14 chr9 59111105 59111251 -64964921 - B3A SINE B2 -45 153 6 2 1035 218 250 49 24 chr9 59111819 59111901 -64964271 - L2c LINE L2 -38 3349 3266 2 1035 1048 296 13 26 chr9 59111965 59112277 -64963895 - MTD LTR MaLR -107 312 5 2 1035 182 391 64 21 chr9 59112685 59112826 -64963346 - L2c LINE L2 -216 3159 3013 2 1035 891 0 65 0 chr9 59112875 59113014 -64963158 + (GA)n Simple_repeat Simple_repeat 1 148 0 2 1036 24 0 0 0 chr9 59113582 59113606 -64962566 + GC_rich Low_complexity Low_complexity 1 24 0 2 1036 377 335 86 21 chr9 59114119 59114305 -64961867 + MER74B LTR ERVL 125 322 -300 2 1036 33 25 0 0 chr9 59114526 59114566 -64961606 + AT_rich Low_complexity Low_complexity 1 40 0 2 1036 243 0 0 0 chr9 59114568 59114595 -64961577 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1036 1185 44 0 0 chr9 59114595 59114732 -64961440 - B1_Mm SINE Alu -9 138 2 2 1036 5678 59 0 1 chr9 59114732 59115426 -64960746 - L1_Mus1 LINE L1 -9 6558 5866 2 1036 314 287 97 66 chr9 59115514 59115759 -64960413 + MLT1G1 LTR MaLR 1 248 -347 2 1036 590 311 49 61 chr9 59115785 59116115 -64960057 + MER74A LTR ERVL 23 393 -229 2 1036 254 247 85 11 chr9 59116249 59116343 -64959829 - L2 LINE L2 -1465 1954 1854 2 1036 232 226 247 0 chr9 59116545 59116638 -64959534 - MLT1F1 LTR MaLR -265 304 189 2 1036 696 246 36 0 chr9 59116906 59117044 -64959128 + RSINE1 SINE B4 11 153 -12 2 1036 461 258 123 26 chr9 59117103 59117258 -64958914 + B4A SINE B4 119 288 -4 2 1036 555 254 22 30 chr9 59117971 59118105 -64958067 - B1F1 SINE Alu -11 138 6 2 1036 366 74 0 0 chr9 59118153 59118207 -64957965 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1036 547 263 193 45 chr9 59118237 59118460 -64957712 + B4A SINE B4 37 292 0 2 1036 262 149 21 0 chr9 59118511 59118558 -64957614 - MER21B LTR ERV1 -369 494 447 2 1036 771 299 85 46 chr9 59118621 59118926 -64957246 - MER21B LTR ERV1 -546 317 1 2 1036 748 256 78 9 chr9 59118994 59119211 -64956961 - MER21-int LTR ERV1 -60 4131 3900 2 1036 230 271 43 49 chr9 59119409 59119572 -64956600 - RMER17A2 LTR ERVK -542 364 203 2 1036 534 116 48 26 chr9 59120286 59120713 -64955459 + (TG)n Simple_repeat Simple_repeat 1 436 0 2 1036 628 251 262 44 chr9 59120731 59120960 -64955212 - B4 SINE B4 -12 280 2 2 1036 710 236 83 41 chr9 59121102 59121291 -64954881 - B3A SINE B2 -3 192 12 2 1036 513 0 0 0 chr9 59121297 59121354 -64954818 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 2 1036 688 125 38 91 chr9 59121371 59121503 -64954669 - B1_Mus1 SINE Alu -13 135 11 2 1036 567 186 240 181 chr9 59121523 59121684 -64954488 - B3 SINE B2 0 216 38 2 1036 1143 77 0 0 chr9 59121684 59121827 -64954345 - B1_Mus1 SINE Alu -2 146 4 2 1036 567 186 240 181 chr9 59121827 59121869 -64954303 - B3 SINE B2 -179 37 1 2 1036 486 0 0 0 chr9 59121873 59121927 -64954245 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1036 1414 289 39 28 chr9 59122177 59122612 -64953560 + Zaphod DNA Tip100 126 565 -3466 2 1036 3256 146 36 6 chr9 59122655 59122713 -64953459 - RLTR20D LTR ERVK -29 539 478 2 1036 270 0 0 0 chr9 59122713 59122743 -64953429 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1036 3256 146 36 6 chr9 59122743 59123207 -64952965 - RLTR20D LTR ERVK -91 477 1 2 1036 980 290 33 69 chr9 59123285 59123372 -64952800 + Zaphod DNA Tip100 3321 3397 -634 2 1036 535 299 81 0 chr9 59123372 59123546 -64952626 - B3A SINE B2 -9 189 2 2 1036 980 290 33 69 chr9 59123546 59123847 -64952325 + Zaphod DNA Tip100 3398 3695 -336 2 1036 348 24 0 0 chr9 59123859 59123900 -64952272 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1036 276 30 0 0 chr9 59123900 59123933 -64952239 + (TGG)n Simple_repeat Simple_repeat 3 35 0 2 1036 312 266 109 0 chr9 59124006 59124070 -64952102 + B1F1 SINE Alu 8 78 -39 2 1036 310 259 12 24 chr9 59124106 59124189 -64951983 + BC1_Mm scRNA scRNA 13 94 -58 2 1036 2559 133 21 83 chr9 59124195 59124539 -64951633 - RLTR11B LTR ERVK 0 453 105 3 1036 1224 49 0 0 chr9 59124539 59124683 -64951489 + B1_Mm SINE Alu 1 144 -3 3 1036 2559 133 21 83 chr9 59124683 59124716 -64951456 - RLTR11B LTR ERVK -349 104 103 3 1036 477 0 0 0 chr9 59124716 59124769 -64951403 + (GAAA)n Simple_repeat Simple_repeat 1 53 0 3 1036 2559 133 21 83 chr9 59124769 59124873 -64951299 - RLTR11B LTR ERVK -351 102 1 3 1036 843 281 92 36 chr9 59125481 59125987 -64950185 - L1M5 LINE L1 -477 5717 5187 3 1036 492 264 284 9 chr9 59126111 59126340 -64949832 + B4A SINE B4 1 292 0 3 1036 886 232 33 19 chr9 59126526 59126737 -64949435 + Lx8 LINE L1 6949 7162 -311 3 1036 325 258 23 38 chr9 59126725 59126858 -64949314 + Lx8 LINE L1 7340 7470 -3 3 1036 759 247 148 0 chr9 59127032 59127214 -64948958 - B4A SINE B4 -83 209 1 3 1036 341 335 121 19 chr9 59127535 59127742 -64948430 - MIRb SINE MIR -32 236 9 3 1036 289 362 89 11 chr9 59128453 59128643 -64947529 + L1MC LINE L1 5437 5641 -2241 3 1036 342 0 0 0 chr9 59128649 59128687 -64947485 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1036 294 254 18 0 chr9 59128695 59128750 -64947422 + B1F2 SINE Alu 1 56 -93 3 1036 535 313 112 81 chr9 59128774 59129122 -64947050 + ORR1E LTR MaLR 1 359 0 3 1036 234 281 91 30 chr9 59129162 59129261 -64946911 + BC1_Mm scRNA scRNA 3 107 -45 3 1036 1304 97 0 0 chr9 59129259 59129435 -64946737 + ORR1B1 LTR MaLR 219 394 0 3 1036 764 163 65 13 chr9 59129446 59129475 -64946697 + B4 SINE B4 57 93 -199 3 1036 349 233 35 83 chr9 59129475 59129620 -64946552 + B1_Mus1 SINE Alu 2 139 -9 3 1036 351 0 0 0 chr9 59129727 59129766 -64946406 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1036 861 44 0 130 chr9 59130107 59130314 -64945858 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1036 539 186 40 20 chr9 59130857 59130956 -64945216 + B1_Mur2 SINE Alu 49 149 0 3 1036 344 241 25 0 chr9 59131163 59131242 -64944930 + ID4 SINE ID 2 82 -1 3 1036 569 229 0 25 chr9 59131399 59131520 -64944652 + PB1D9 SINE Alu 3 120 0 3 1036 378 0 0 0 chr9 59131552 59131594 -64944578 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1036 237 311 40 26 chr9 59131838 59131914 -64944258 + ID_B1 SINE B4 80 156 -68 3 1036 302 305 31 10 chr9 59131850 59131946 -64944226 + PB1D10 SINE Alu 10 107 -10 3 1036 549 114 0 0 chr9 59132451 59132556 -64943616 + (TC)n Simple_repeat Simple_repeat 1 105 0 3 1036 463 101 29 0 chr9 59132556 59132625 -64943547 - B1F1 SINE Alu -5 144 74 3 1036 465 184 0 0 chr9 59133072 59133148 -64943024 + B1_Mur3 SINE Alu 37 112 -37 3 1036 279 0 0 0 chr9 59133148 59133179 -64942993 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1036 452 216 0 30 chr9 59133179 59133202 -64942970 + B1_Mur2 SINE Alu 113 132 -17 3 1036 31 26 0 0 chr9 59133354 59133392 -64942780 + AT_rich Low_complexity Low_complexity 1 38 0 3 1036 526 186 82 0 chr9 59133394 59133491 -64942681 - RSINE1 SINE B4 -23 142 38 3 1036 236 330 83 0 chr9 59133585 59133694 -64942478 - L2a LINE L2 -95 3331 3214 3 1036 536 268 56 91 chr9 59133858 59133905 -64942267 - MLT1H LTR MaLR -24 525 494 3 1036 1450 75 0 0 chr9 59133905 59134091 -64942081 + B2_Mm2 SINE B2 1 186 -9 3 1036 536 264 81 178 chr9 59134091 59134301 -64941871 - MLT1H LTR MaLR -56 535 335 3 1036 684 276 107 15 chr9 59134601 59134862 -64941310 + B4A SINE B4 1 285 -7 3 1036 337 177 25 0 chr9 59134876 59134955 -64941217 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1036 338 243 92 18 chr9 59134958 59135067 -64941105 + MLT1B LTR MaLR 38 154 -236 3 1036 226 253 10 170 chr9 59135703 59135803 -64940369 - MT2B2 LTR ERVL -334 250 167 3 1036 443 160 13 13 chr9 59135729 59135805 -64940367 - B1_Mur3 SINE Alu -73 76 1 3 1036 389 192 13 40 chr9 59135738 59135814 -64940358 - B4 SINE B4 -139 153 80 3 1036 427 273 35 35 chr9 59135855 59135969 -64940203 - B3A SINE B2 -31 167 54 3 1036 294 50 0 0 chr9 59136609 59136649 -64939523 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1036 249 108 0 0 chr9 59137120 59137157 -64939015 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1036 272 273 106 0 chr9 59138018 59138084 -64938088 + ID_B1 SINE B4 83 155 -69 3 1036 320 91 73 0 chr9 59138085 59138140 -64938032 + B2_Mm2 SINE B2 1 59 -136 3 1036 411 81 0 0 chr9 59138152 59138214 -64937958 + B2_Mm1a SINE B2 127 188 -5 3 1036 300 259 0 0 chr9 59138210 59138264 -64937908 + ID_B1 SINE B4 143 196 -28 3 1036 235 323 15 0 chr9 59138213 59138278 -64937894 + B1F SINE Alu 68 133 -16 3 1036 22 0 0 0 chr9 59140388 59140410 -64935762 + AT_rich Low_complexity Low_complexity 1 22 0 3 1036 752 145 16 0 chr9 59140562 59140686 -64935486 - B1_Mur4 SINE Alu -6 144 19 3 1036 709 265 89 85 chr9 59140796 59141121 -64935051 - MLT1B LTR MaLR -11 379 51 3 1036 1792 182 65 6 chr9 59141121 59141474 -64934698 - ORR1D1 LTR MaLR 0 374 1 3 1036 493 292 71 116 chr9 59141474 59141528 -64934644 - MLT1B LTR MaLR -324 50 1 3 1036 494 323 171 14 chr9 59141643 59142081 -64934091 - MLT1G3 LTR MaLR 0 489 17 3 1036 250 148 74 0 chr9 59142225 59142276 -64933896 + PB1 SINE Alu 1 57 -70 3 1036 921 202 44 158 chr9 59142277 59142682 -64933490 - RLTR15 LTR ERVK 0 359 1 3 1036 387 0 0 0 chr9 59144246 59144289 -64931883 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1036 214 216 0 0 chr9 59144584 59144621 -64931551 - B1F SINE Alu -110 39 3 3 1036 216 0 0 0 chr9 59144628 59144652 -64931520 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1036 282 291 93 43 chr9 59144928 59145068 -64931104 - MIRb SINE MIR -36 232 86 3 1036 311 256 70 47 chr9 59145919 59146005 -64930167 + B1F2 SINE Alu 15 102 -47 3 1036 207 0 0 0 chr9 59146106 59146129 -64930043 + (GTTTG)n Simple_repeat Simple_repeat 1 23 0 3 1036 581 171 18 45 chr9 59146129 59146239 -64929933 - B1_Mur3 SINE Alu -13 136 30 3 1036 326 351 76 25 chr9 59146399 59146557 -64929615 - MER20 DNA MER1_type -25 194 29 3 1036 273 312 125 0 chr9 59146668 59146764 -64929408 - MER5A DNA MER1_type -80 109 2 3 1036 832 256 217 21 chr9 59146993 59147380 -64928792 - RLTR11A2 LTR ERVK -60 467 5 3 1036 277 297 75 32 chr9 59148141 59148235 -64927937 + L4 LINE RTE 1206 1303 -726 3 1036 1085 287 115 20 chr9 59148772 59149181 -64926991 - Tigger6b DNA MER2_type -1149 448 1 3 1036 357 290 58 44 chr9 59149251 59149337 -64926835 + B1F SINE Alu 1 85 -64 3 1036 913 166 67 22 chr9 59149337 59149516 -64926656 - B2_Mm2 SINE B2 -7 188 2 3 1036 357 290 58 44 chr9 59149516 59149566 -64926606 + B1F SINE Alu 86 139 -10 3 1036 263 255 0 0 chr9 59149612 59149663 -64926509 + PB1D9 SINE Alu 1 51 -69 3 1036 258 208 125 0 chr9 59149705 59149777 -64926395 + ID4 SINE ID 2 82 -1 3 1036 180 295 110 39 chr9 59149836 59149991 -64926181 + L4 LINE RTE 1775 1940 -89 3 1036 492 203 161 15 chr9 59149998 59150128 -64926044 - B1_Mur3 SINE Alu 0 149 1 3 1036 662 225 156 71 chr9 59150394 59150718 -64925454 - RMER13A LTR ERVK -376 532 177 3 1036 293 327 12 70 chr9 59150782 59150953 -64925219 - YREP_Mm Unknown Unknown -1472 340 180 3 1036 704 246 7 40 chr9 59150811 59150963 -64925209 + ID_B1 SINE B4 78 224 0 3 1036 818 190 115 22 chr9 59150997 59151180 -64924992 + B3 SINE B2 11 210 -6 3 1036 376 314 78 69 chr9 59151821 59152070 -64924102 - MIR SINE MIR -1 267 21 3 1036 270 264 0 19 chr9 59152182 59152236 -64923936 + ID4 SINE ID 29 81 -2 3 1036 423 0 0 0 chr9 59152240 59152287 -64923885 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1036 229 111 0 27 chr9 59152299 59152336 -64923836 - B3 SINE B2 -175 41 6 3 1036 542 125 104 0 chr9 59152422 59152518 -64923654 - B1_Mus2 SINE Alu -1 146 41 3 1036 246 284 99 118 chr9 59152426 59152466 -64923706 - B4 SINE B4 -73 219 129 3 1036 317 256 67 34 chr9 59152466 59152555 -64923617 - RLTR25B LTR ERVK -530 498 407 3 1036 246 284 99 118 chr9 59152555 59152578 -64923594 - B4 SINE B4 -73 128 71 3 1036 392 286 87 36 chr9 59152579 59152717 -64923455 - L1MEc LINE L1 -2390 4616 4472 3 1036 225 0 0 0 chr9 59152844 59152869 -64923303 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1036 1239 61 0 0 chr9 59152869 59153017 -64923155 - B1_Mus1 SINE Alu 0 148 1 3 1036 378 200 18 26 chr9 59153359 59153472 -64922700 + T-rich Low_complexity Low_complexity 2 113 0 3 1036 471 35 0 0 chr9 59153475 59153532 -64922640 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 3 1036 198 0 0 0 chr9 59153532 59153554 -64922618 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 3 1036 1145 65 0 0 chr9 59153558 59153696 -64922476 - B1_Mus2 SINE Alu -9 138 1 3 1036 546 272 112 70 chr9 59153724 59153888 -64922284 - L1MEc LINE L1 -3919 3168 3035 3 1036 1179 170 173 66 chr9 59153888 59154235 -64921937 + ORR1C2 LTR MaLR 1 384 0 3 1036 546 263 124 76 chr9 59154235 59154439 -64921733 - L1MEc LINE L1 -4053 3034 2801 3 1036 1003 216 55 0 chr9 59154439 59154638 -64921534 - B3 SINE B2 -4 212 3 3 1036 546 263 124 76 chr9 59154638 59154666 -64921506 - L1MEc LINE L1 -4287 2800 2781 3 1036 388 312 96 0 chr9 59154666 59154823 -64921349 - RMER15 LTR ERVL -1 574 403 3 1036 346 305 102 0 chr9 59154922 59155050 -64921122 - Lx8 LINE L1 -297 7176 7036 3 1036 223 140 20 20 chr9 59155620 59155637 -64920535 + (TA)n Simple_repeat Simple_repeat 1 18 0 3 1036 707 156 164 0 chr9 59155637 59155765 -64920407 - B1_Mur1 SINE Alu 0 149 1 3 1036 223 140 20 20 chr9 59155765 59155798 -64920374 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1036 291 219 0 110 chr9 59155804 59155886 -64920286 - RSINE1 SINE B4 -6 159 87 3 1036 384 219 55 79 chr9 59155970 59156134 -64920038 - L1MEc LINE L1 -4535 2552 2393 3 1036 338 211 88 44 chr9 59156152 59156266 -64919906 - L1MEc LINE L1 -6196 891 773 3 1036 3407 45 0 0 chr9 59156582 59156978 -64919194 + MTA_Mm LTR MaLR 1 396 0 3 1036 465 221 0 21 chr9 59157343 59157440 -64918732 + PB1D10 SINE Alu 22 116 -1 3 1036 364 236 57 34 chr9 59157492 59157617 -64918555 - MLT1B LTR MaLR -7 460 279 3 1036 242 323 158 0 chr9 59157626 59157753 -64918419 - MLT1B LTR MaLR -319 148 2 3 1036 188 34 0 33 chr9 59161926 59161956 -64914216 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1036 21 0 0 0 chr9 59163935 59163956 -64912216 + AT_rich Low_complexity Low_complexity 1 21 0 4 1036 24 0 0 0 chr9 59163972 59163996 -64912176 + AT_rich Low_complexity Low_complexity 1 24 0 4 1036 292 179 194 0 chr9 59164428 59164495 -64911677 + B1_Mus2 SINE Alu 62 141 -6 4 1036 279 227 164 52 chr9 59165510 59165626 -64910546 + MIRb SINE MIR 110 238 -30 4 1036 485 270 113 44 chr9 59166092 59166367 -64909805 - L1M4 LINE L1 -876 5568 5275 4 1036 246 322 35 0 chr9 59166485 59166572 -64909600 - L1M4 LINE L1 -1088 5058 4969 4 1036 358 246 219 22 chr9 59166665 59166765 -64909407 - L1MC1 LINE L1 -394 5939 5813 4 1036 1437 65 32 0 chr9 59166765 59166950 -64909222 - B2_Mm2 SINE B2 -3 192 2 4 1036 364 251 240 32 chr9 59166950 59167164 -64909008 - L1MC1 LINE L1 -2212 5830 5557 4 1036 523 250 44 36 chr9 59167563 59167700 -64908472 + ID_B1 SINE B4 82 219 -5 4 1036 931 121 84 0 chr9 59168157 59168323 -64907849 - URR1A DNA MER1_type 0 226 47 4 1036 5718 35 0 0 chr9 59168326 59168992 -64907180 - L1Md_T LINE L1 0 6582 5917 4 1036 968 19 0 0 chr9 59168992 59169100 -64907072 + L1Md_T LINE L1 5813 5920 -662 4 1036 21 36 0 0 chr9 59169796 59169824 -64906348 + AT_rich Low_complexity Low_complexity 1 28 0 4 1036 468 200 12 0 chr9 59169938 59170018 -64906154 - ID4 SINE ID 0 83 3 4 1036 243 0 0 0 chr9 59172062 59172089 -64904083 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 4 1036 802 94 0 25 chr9 59173127 59173247 -64902925 + B1_Mur4 SINE Alu 34 150 0 4 1036 253 181 0 148 chr9 59173279 59173371 -64902801 - B1F SINE Alu 0 149 37 4 1036 782 30 0 0 chr9 59173376 59173477 -64902695 + B1_Mus2 SINE Alu 47 147 0 4 1036 408 320 86 0 chr9 59173569 59173697 -64902475 + RSINE1 SINE B4 2 140 -25 4 1036 195 42 0 0 chr9 59173853 59173877 -64902295 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1036 1163 75 0 0 chr9 59173877 59174024 -64902148 - B1_Mus2 SINE Alu 0 147 1 4 1036 565 209 63 182 chr9 59174201 59174295 -64901877 + ID SINE ID 1 79 -145 4 1036 613 296 48 11 chr9 59174295 59174483 -64901689 + B3A SINE B2 1 195 -3 4 1036 565 209 63 182 chr9 59174483 59174503 -64901669 + ID_B1 SINE B4 80 222 -2 4 1036 618 179 51 22 chr9 59174503 59174640 -64901532 + B1_Mur1 SINE Alu 7 147 -2 4 1036 1535 48 0 21 chr9 59174700 59174891 -64901281 - B2_Mm1a SINE B2 -5 188 2 4 1036 23 0 0 0 chr9 59175603 59175626 -64900546 + AT_rich Low_complexity Low_complexity 1 23 0 4 1036 223 255 0 0 chr9 59176223 59176274 -64899898 + ID SINE ID 24 74 -150 4 1036 5288 77 27 3 chr9 59176599 59177311 -64898861 + L1_Mus4 LINE L1 5905 6633 -3 4 1036 24 32 0 0 chr9 59177311 59177342 -64898830 + AT_rich Low_complexity Low_complexity 1 31 0 4 1036 1204 41 0 7 chr9 59178367 59178515 -64897657 - B1_Mus1 SINE Alu 0 148 2 4 1036 1216 108 31 56 chr9 59178769 59178965 -64897207 + B2_Mm1t SINE B2 1 191 -2 4 1036 1454 67 0 6 chr9 59178966 59179146 -64897026 - B2_Mm2 SINE B2 -15 180 2 4 1036 400 235 20 0 chr9 59180163 59180265 -64895907 + B1_Mur2 SINE Alu 45 148 -1 4 1036 425 132 36 0 chr9 59180497 59180580 -64895592 + L1Md_F2 LINE L1 6497 6582 0 4 1036 540 281 24 68 chr9 59181049 59181255 -64894917 - RMER30 DNA MER1_type -1 201 5 4 1036 191 194 0 0 chr9 59181783 59181819 -64894353 - L2a LINE L2 -1 3425 3390 4 1036 625 225 56 0 chr9 59182527 59182669 -64893503 + B3 SINE B2 58 207 -9 4 1036 651 116 75 122 chr9 59182675 59182822 -64893350 + B1_Mur3 SINE Alu 2 141 -8 4 1036 943 118 21 0 chr9 59183046 59183190 -64892982 + B1_Mur3 SINE Alu 2 148 -1 4 1036 1040 116 7 0 chr9 59183193 59183339 -64892833 + B1_Mus1 SINE Alu 1 147 -1 4 1036 239 271 0 0 chr9 59183341 59183400 -64892772 + A-rich Low_complexity Low_complexity 1 59 0 4 1036 525 16 0 0 chr9 59183449 59183511 -64892661 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 4 1036 299 220 123 23 chr9 59183539 59183636 -64892536 - PB1D7 SINE Alu -3 117 12 4 1036 1388 76 32 0 chr9 59183784 59183969 -64892203 - B2_Mm1a SINE B2 -2 191 1 4 1036 886 214 20 20 chr9 59184429 59184629 -64891543 + B3 SINE B2 3 202 -14 4 1036 977 172 52 38 chr9 59185817 59186028 -64890144 + B3 SINE B2 3 216 0 4 1036 460 210 20 20 chr9 59187312 59187414 -64888758 + B1_Mur1 SINE Alu 48 149 0 4 1036 1180 41 14 0 chr9 59187415 59187560 -64888612 + B1_Mus2 SINE Alu 1 147 0 4 1036 1304 20 0 0 chr9 59188131 59188278 -64887894 + B1_Mm SINE Alu 1 147 0 4 1036 484 179 42 10 chr9 59189275 59189371 -64886801 + B3A SINE B2 2 100 -98 4 1036 1003 88 49 12 chr9 59189371 59189533 -64886639 - B2_Mm2 SINE B2 -27 168 1 4 1036 542 211 8 39 chr9 59189533 59189650 -64886522 + B3 SINE B2 87 202 -14 4 1036 288 0 0 0 chr9 59189650 59189682 -64886490 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 4 1036 1107 84 0 0 chr9 59189683 59189825 -64886347 - B1_Mus2 SINE Alu -4 143 2 4 1036 21 0 0 0 chr9 59189832 59189853 -64886319 + AT_rich Low_complexity Low_complexity 1 21 0 4 1036 1282 88 0 81 chr9 59189928 59190139 -64886033 - B2_Mm2 SINE B2 0 195 2 4 1036 1013 105 14 0 chr9 59190591 59190734 -64885438 + B1_Mur3 SINE Alu 5 149 0 4 1036 473 238 62 155 chr9 59190747 59190941 -64885231 + B3 SINE B2 30 205 -11 4 1036 328 337 0 0 chr9 59190982 59191071 -64885101 + PB1D10 SINE Alu 2 90 -27 4 1036 418 276 103 0 chr9 59190992 59191108 -64885064 + ID_B1 SINE B4 93 220 -4 4 1036 631 216 90 0 chr9 59191186 59191320 -64884852 + B1_Mur1 SINE Alu 3 148 -1 4 1036 420 301 87 0 chr9 59192240 59192343 -64883829 - RSINE1 SINE B4 -8 157 46 4 1036 361 225 70 0 chr9 59192391 59192462 -64883710 + ID4_ SINE ID 4 79 -4 4 1036 1150 58 0 0 chr9 59192941 59193079 -64883093 + B1_Mus1 SINE Alu 2 139 -9 4 1036 1482 79 16 0 chr9 59193284 59193474 -64882698 + B2_Mm2 SINE B2 1 193 -2 4 1036 22 0 0 0 chr9 59193579 59193601 -64882571 + AT_rich Low_complexity Low_complexity 1 22 0 4 1036 337 315 93 27 chr9 59193988 59194138 -64882034 - RSINE1 SINE B4 -2 163 4 4 1036 463 257 194 0 chr9 59194165 59194371 -64881801 + B4A SINE B4 11 256 -36 4 1036 432 219 138 15 chr9 59194474 59194604 -64881568 + B1_Mm SINE Alu 2 147 0 4 1036 1089 205 24 5 chr9 59194697 59194903 -64881269 - B3 SINE B2 -3 213 4 4 1036 341 268 43 26 chr9 59195047 59195162 -64881010 + PB1D9 SINE Alu 4 120 0 4 1036 853 228 31 10 chr9 59195167 59195362 -64880810 + B3 SINE B2 1 199 -17 4 1036 232 280 40 0 chr9 59195477 59195527 -64880645 + ID4_ SINE ID 21 72 -11 4 1036 1085 103 0 0 chr9 59195597 59195743 -64880429 - B1_Mus1 SINE Alu 0 148 3 4 1036 255 326 115 7 chr9 59196245 59196384 -64879788 + RMER15 LTR ERVL 422 575 0 4 1036 962 298 121 13 chr9 59196384 59196772 -64879400 + RMER15-int LTR ERVL 1 430 -4569 4 1036 918 253 151 7 chr9 59196851 59197142 -64879030 + RMER15-int LTR ERVL 580 912 -4087 4 1036 243 256 33 44 chr9 59197146 59197236 -64878936 + RLTR13B3 LTR ERVK 552 640 -289 4 1036 1299 173 216 3 chr9 59197278 59197579 -64878593 + ORR1B1 LTR MaLR 21 385 -9 4 1036 478 259 49 35 chr9 59197596 59197740 -64878432 + RSINE1 SINE B4 20 165 0 4 1036 650 259 21 7 chr9 59197794 59197934 -64878238 + RSINE1 SINE B4 11 152 -13 4 1036 189 0 0 0 chr9 59197936 59197957 -64878215 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1036 1089 43 0 0 chr9 59197966 59198106 -64878066 + B1_Mus2 SINE Alu 8 147 0 4 1036 1932 145 12 6 chr9 59198123 59198449 -64877723 + RLTR14 LTR ERV1 55 382 0 4 1036 402 255 29 10 chr9 59198877 59198980 -64877192 + PB1D10 SINE Alu 13 117 0 4 1036 454 308 17 40 chr9 59198985 59199161 -64877011 + L1MA5 LINE L1 5617 5788 -512 4 1036 5159 79 23 1 chr9 59199355 59200016 -64876156 + RLTR33 LTR ERVK 1 675 -3 4 1036 458 208 150 0 chr9 59200028 59200148 -64876024 + L1MA5 LINE L1 5800 5937 -363 4 1036 254 295 71 31 chr9 59200148 59200246 -64875926 + MT2B2 LTR ERVL 155 256 -328 4 1036 236 245 136 48 chr9 59200163 59200266 -64875906 + PB1D9 SINE Alu 8 119 -1 4 1036 263 227 0 16 chr9 59200267 59200341 -64875831 + L1MA5 LINE L1 5939 6011 -289 4 1036 390 178 45 36 chr9 59200435 59200546 -64875626 + L1MA5 LINE L1 6188 6299 -1 4 1036 219 296 85 12 chr9 59200548 59200630 -64875542 + PB1D10 SINE Alu 1 88 -29 4 1036 183 139 0 0 chr9 59201127 59201163 -64875009 + (CCCGG)n Simple_repeat Simple_repeat 4 39 0 4 1036 439 319 91 15 chr9 59201593 59201857 -64874315 + L1MC LINE L1 5506 5789 -2093 4 1036 1187 63 0 0 chr9 59202030 59202173 -64873999 + B1_Mm SINE Alu 5 147 0 4 1036 270 0 0 0 chr9 59202305 59202335 -64873837 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1036 692 42 0 0 chr9 59202335 59202430 -64873742 - B1_Mus2 SINE Alu -10 137 43 4 1036 542 211 14 86 chr9 59202415 59202555 -64873617 + B1_Mur2 SINE Alu 20 149 0 4 1036 339 263 105 48 chr9 59202629 59202753 -64873419 + ID_B1 SINE B4 80 210 -14 4 1036 180 0 0 0 chr9 59202753 59202773 -64873399 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 4 1036 189 107 0 0 chr9 59202795 59202823 -64873349 + (TGGA)n Simple_repeat Simple_repeat 1 28 0 4 1036 494 273 14 20 chr9 59202854 59203000 -64873172 + B1F SINE Alu 3 147 -2 4 1036 352 224 35 23 chr9 59202999 59203086 -64873086 + B1F2 SINE Alu 1 88 -61 4 1036 402 243 43 39 chr9 59203162 59203347 -64872825 + B3A SINE B2 6 194 -1 4 1036 565 243 97 5 chr9 59203350 59203536 -64872636 + B3 SINE B2 6 208 -8 4 1036 432 0 0 0 chr9 59204301 59204349 -64871823 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1036 272 284 15 0 chr9 59204692 59204759 -64871413 + B3A SINE B2 1 68 -130 5 1036 311 293 12 0 chr9 59204869 59204951 -64871221 + B3 SINE B2 85 167 -49 5 1036 1661 167 19 80 chr9 59204958 59205335 -64870837 + ORR1B1 LTR MaLR 41 394 0 5 1036 1447 226 84 41 chr9 59205599 59206061 -64870111 - RMER1C Other Other -3 1339 858 5 1036 714 144 14 14 chr9 59206727 59206875 -64869297 + CT-rich Low_complexity Low_complexity 3 150 0 5 1036 1313 133 0 5 chr9 59206878 59207074 -64869098 - B2_Mm2 SINE B2 0 195 1 5 1036 430 361 38 24 chr9 59207466 59207679 -64868493 + ID_B1 SINE B4 4 219 -5 5 1036 279 93 0 0 chr9 59209548 59209591 -64866581 + (T)n Simple_repeat Simple_repeat 1 43 0 5 1036 1240 34 0 7 chr9 59209593 59209741 -64866431 - B1_Mus2 SINE Alu 0 147 1 5 1036 321 26 0 0 chr9 59209855 59209893 -64866279 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 5 1036 3921 60 40 1 chr9 59211073 59211715 -64864457 - L1_Mus2 LINE L1 -584 5982 5325 5 1036 341 86 0 17 chr9 59211813 59211872 -64864300 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 5 1036 1301 20 0 0 chr9 59213265 59213412 -64862760 - B1_Mus1 SINE Alu 0 148 2 5 1036 1026 252 99 68 chr9 59214718 59215230 -64860942 - Lx7 LINE L1 -46 7650 7065 5 1036 234 62 0 0 chr9 59216126 59216158 -64860014 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 5 1036 201 39 0 0 chr9 59217372 59217398 -64858774 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 5 1036 548 290 59 50 chr9 59217516 59217857 -64858315 - RLTR10D LTR ERVK 0 359 16 5 1036 1416 179 31 19 chr9 59217857 59218113 -64858059 - IAP-d-int LTR ERVK -21 6521 6263 5 1036 15309 271 27 25 chr9 59218300 59223373 -64852799 - IAP-d-int LTR ERVK -1361 5181 67 5 1036 406 183 96 0 chr9 59223369 59223473 -64852699 - IAP-d-int LTR ERVK -6407 135 22 5 1036 431 287 98 42 chr9 59223537 59223824 -64852348 - RLTR10D LTR ERVK -56 303 1 5 1036 1676 26 0 0 chr9 59223966 59224159 -64852013 - B2_Mm1t SINE B2 0 193 1 5 1036 395 341 22 58 chr9 59226038 59226312 -64849860 - MT2A LTR ERVL -218 315 52 5 1036 316 317 96 0 chr9 59226245 59226349 -64849823 - MTE2a LTR MaLR -259 120 7 5 1036 216 0 0 0 chr9 59227839 59227863 -64848309 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 5 1036 249 331 148 39 chr9 59227863 59228045 -64848127 + ID_B1 SINE B4 15 216 -8 5 1036 490 217 13 44 chr9 59228611 59228767 -64847405 - MTD LTR MaLR 0 419 235 5 1036 630 249 21 27 chr9 59228802 59228988 -64847184 - RLTR11A2 LTR ERVK -205 322 138 5 1036 605 198 0 0 chr9 59228996 59229097 -64847075 - RLTR11A2 LTR ERVK -359 168 68 5 1036 18824 101 59 66 chr9 59229097 59229400 -64846772 - L1_Mur1 LINE L1 -1050 4836 4493 5 1036 240 300 47 60 chr9 59229400 59229549 -64846623 - MLT1E1 LTR MaLR -292 362 216 5 1036 18824 101 59 66 chr9 59229549 59230209 -64845963 - L1_Mur1 LINE L1 -1050 4492 3741 5 1036 1200 41 0 0 chr9 59230209 59230355 -64845817 - B1_Mus2 SINE Alu 0 147 2 5 1036 18824 101 59 66 chr9 59230355 59232666 -64843506 - L1_Mur1 LINE L1 -2146 3740 1428 5 1036 2378 70 3 0 chr9 59232666 59232979 -64843193 - L1_Mus2 LINE L1 0 6566 6253 5 1036 18824 162 112 45 chr9 59232979 59234059 -64842113 - L1_Mur1 LINE L1 -4459 1427 4 5 1036 681 281 99 138 chr9 59234449 59234541 -64841631 - RLTR20B3 LTR ERVK 0 541 452 5 1036 261 0 0 0 chr9 59234541 59234570 -64841602 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1036 724 283 92 135 chr9 59234570 59235039 -64841133 - RLTR20B3 LTR ERVK -90 451 21 5 1036 322 253 88 12 chr9 59235174 59235254 -64840918 - RSINE1 SINE B4 -77 88 3 5 1036 749 227 111 26 chr9 59235641 59235910 -64840262 + ORR1D1 LTR MaLR 14 369 -5 5 1036 403 242 0 29 chr9 59236608 59236710 -64839462 + PB1D7 SINE Alu 14 112 -8 5 1036 727 224 22 7 chr9 59236782 59236917 -64839255 + ID_B1 SINE B4 81 217 -7 5 1036 242 275 75 0 chr9 59241371 59241451 -64834721 - BC1_Mm scRNA scRNA -53 99 14 5 1036 563 231 122 7 chr9 59241768 59241910 -64834262 + B1_Mur4 SINE Alu 7 149 0 5 1036 644 256 96 18 chr9 59241940 59242107 -64834065 + B3A SINE B2 1 180 -18 5 1036 1154 35 35 0 chr9 59242149 59242290 -64833882 + B1_Mm SINE Alu 2 147 0 5 1036 428 97 16 0 chr9 59242907 59242969 -64833203 - B2_Mm2 SINE B2 -132 63 1 5 1036 431 289 73 24 chr9 59242972 59243096 -64833076 - B1_Mur1 SINE Alu -7 142 13 5 1036 584 256 80 0 chr9 59243179 59243316 -64832856 - B1_Mur1 SINE Alu 0 149 2 5 1036 297 344 30 48 chr9 59243316 59243350 -64832822 - B4 SINE B4 -203 89 59 5 1036 275 257 29 0 chr9 59243365 59243435 -64832737 + MIRb SINE MIR 182 253 -15 5 1036 890 86 224 0 chr9 59243445 59243597 -64832575 + B2_Mm1t SINE B2 1 186 -7 5 1036 336 204 132 28 chr9 59243730 59243836 -64832336 + PB1D10 SINE Alu 1 117 0 5 1036 201 74 0 0 chr9 59244059 59244086 -64832086 + (A)n Simple_repeat Simple_repeat 1 27 0 5 129 883 285 70 59 chr9 59244482 59244775 -64831397 + L1MA7 LINE L1 5424 5717 -574 5 1037 981 45 113 0 chr9 59244775 59244908 -64831264 + B1_Mus1 SINE Alu 1 148 0 5 1037 883 285 70 59 chr9 59244908 59245170 -64831002 + L1MA7 LINE L1 5718 5985 -306 5 1037 250 276 91 13 chr9 59245479 59245556 -64830616 - MER3 DNA MER1_type -122 87 5 5 1037 2019 142 13 0 chr9 59245568 59245885 -64830287 + ORR1A3 LTR MaLR 6 326 0 5 1037 594 195 99 23 chr9 59246092 59246223 -64829949 - B1_Mur4 SINE Alu 0 150 10 5 1037 22 0 0 0 chr9 59246327 59246349 -64829823 + AT_rich Low_complexity Low_complexity 1 22 0 5 1037 670 270 11 49 chr9 59246356 59246539 -64829633 - B3 SINE B2 -38 178 3 5 1037 833 8 256 0 chr9 59246583 59246700 -64829472 - B1_Mus2 SINE Alu 0 147 1 5 1037 249 234 109 0 chr9 59246759 59246823 -64829349 + B1_Mur2 SINE Alu 73 143 -6 5 1037 1307 69 39 28 chr9 59246859 59247037 -64829135 + B2_Mm2 SINE B2 2 181 -14 5 1037 380 321 145 7 chr9 59247144 59247282 -64828890 + RSINE1 SINE B4 3 159 -6 5 1037 387 292 123 16 chr9 59247411 59247533 -64828639 + B1F1 SINE Alu 2 136 -13 5 1037 441 129 0 0 chr9 59247983 59248053 -64828119 + (TATG)n Simple_repeat Simple_repeat 3 72 0 5 1037 303 283 21 35 chr9 59248063 59248206 -64827966 + (CATATA)n Simple_repeat Simple_repeat 6 146 0 5 1037 795 110 31 8 chr9 59248206 59248334 -64827838 + B1_Mus1 SINE Alu 17 147 -1 5 1037 267 210 0 31 chr9 59248334 59248398 -64827774 + GA-rich Low_complexity Low_complexity 1 62 0 5 1037 489 17 0 0 chr9 59248491 59248549 -64827623 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 5 1037 402 21 0 0 chr9 59248555 59248602 -64827570 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 5 1037 263 243 72 72 chr9 59248629 59248740 -64827432 - PB1D9 SINE Alu -8 112 2 5 1037 373 220 10 108 chr9 59248980 59248997 -64827175 + MT2B LTR ERVL 150 156 -445 5 1037 493 222 0 22 chr9 59248997 59249089 -64827083 + B1_Mus2 SINE Alu 1 90 -57 5 1037 242 116 23 0 chr9 59249107 59249150 -64827022 + (CAT)n Simple_repeat Simple_repeat 1 44 0 5 1037 246 366 50 44 chr9 59249273 59249433 -64826739 + MER58A DNA MER1_type 10 170 -54 5 1037 264 321 0 12 chr9 59249682 59249764 -64826408 - B4A SINE B4 -70 222 142 5 1037 276 341 41 69 chr9 59249867 59250012 -64826160 - B1F1 SINE Alu -8 141 1 5 1037 263 304 72 0 chr9 59250159 59250228 -64825944 - PB1D10 SINE Alu -38 79 6 5 1037 274 295 93 28 chr9 59250911 59251019 -64825153 + PB1D10 SINE Alu 3 117 0 5 1037 528 234 27 14 chr9 59251863 59252010 -64824162 - B1_Mur1 SINE Alu 0 149 1 5 1037 605 72 12 0 chr9 59252204 59252287 -64823885 - BC1_Mm scRNA scRNA -68 84 1 5 1037 249 222 37 0 chr9 59252248 59252302 -64823870 - ZP3AR Satellite Satellite -130 82 27 5 1037 588 312 7 0 chr9 59252384 59252525 -64823647 + B3A SINE B2 9 150 -48 5 1037 654 285 100 52 chr9 59252674 59252944 -64823228 + MER2 DNA MER2_type 48 330 -15 5 1037 240 170 0 0 chr9 59253840 59253893 -64822279 + T-rich Low_complexity Low_complexity 1 53 0 5 1037 1242 27 7 0 chr9 59253899 59254045 -64822127 - B1_Mm SINE Alu 0 147 1 5 1037 745 171 64 7 chr9 59254047 59254188 -64821984 - B1_Mur4 SINE Alu -1 149 1 5 1037 411 261 105 132 chr9 59254223 59254413 -64821759 - B3 SINE B2 -8 187 3 5 1037 1182 91 37 21 chr9 59254731 59254921 -64821251 - B2_Mm1t SINE B2 0 193 1 5 1037 342 268 61 61 chr9 59254954 59255101 -64821071 - B1_Mm SINE Alu 0 147 1 5 1037 848 294 43 28 chr9 59255153 59255408 -64820764 - B4A SINE B4 -3 289 31 5 1037 253 241 35 0 chr9 59256699 59256716 -64819456 + B4A SINE B4 67 123 -166 5 1037 262 158 0 0 chr9 59256716 59256754 -64819418 + B1F SINE Alu 1 38 -111 5 1037 189 107 0 0 chr9 59256759 59256787 -64819385 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1037 786 234 39 197 chr9 59257248 59257456 -64818716 + B3 SINE B2 8 204 -12 5 1037 24 0 0 0 chr9 59257457 59257481 -64818691 + AT_rich Low_complexity Low_complexity 1 24 0 5 1037 1246 34 0 0 chr9 59257536 59257682 -64818490 + B1_Mus1 SINE Alu 1 146 -2 5 1037 235 328 172 25 chr9 59257781 59257984 -64818188 - B4 SINE B4 -49 243 11 5 1037 283 234 0 59 chr9 59258259 59258327 -64817845 + MLT1A0 LTR MaLR 19 82 -283 5 1037 342 237 42 50 chr9 59258330 59258450 -64817722 + PB1D9 SINE Alu 2 120 0 5 1037 502 297 92 11 chr9 59258566 59258750 -64817422 + MLT1A0 LTR MaLR 165 363 -2 5 1037 683 316 90 33 chr9 59258752 59259174 -64816998 + MLT1A0-int LTR MaLR 21 466 -1269 5 1037 24 67 0 0 chr9 59259232 59259277 -64816895 + AT_rich Low_complexity Low_complexity 1 45 0 5 1037 383 216 75 7 chr9 59259907 59259998 -64816174 + B1F1 SINE Alu 6 97 -20 5 1037 302 220 154 41 chr9 59260489 59260612 -64815560 - L1M5 LINE L1 -2192 3954 3818 5 1037 289 258 61 0 chr9 59260629 59260695 -64815477 - ID SINE ID -153 71 2 5 1037 1178 75 0 0 chr9 59260840 59260986 -64815186 - B1_Mus2 SINE Alu 0 147 2 5 1037 288 283 9 45 chr9 59261100 59261211 -64814961 - PB1D10 SINE Alu -8 109 3 5 1037 518 214 25 25 chr9 59261638 59261758 -64814414 - PB1D9 SINE Alu 0 120 1 6 1037 471 196 348 45 chr9 59261850 59262005 -64814167 - B3 SINE B2 -12 204 3 6 1037 679 142 26 0 chr9 59262157 59262270 -64813902 + PB1D9 SINE Alu 5 120 0 6 1037 414 263 30 7 chr9 59262389 59262505 -64813667 + PB1D9 SINE Alu 30 145 -5 6 1037 342 0 0 0 chr9 59263352 59263390 -64812782 + (CAG)n Simple_repeat Simple_repeat 1 38 0 6 1037 614 254 0 51 chr9 59263393 59263530 -64812642 - B1_Mur2 SINE Alu -7 142 13 6 1037 375 321 13 97 chr9 59263530 59263548 -64812624 - ID_B1 SINE B4 -7 217 76 6 1037 272 245 20 60 chr9 59263684 59263784 -64812388 + L1M4 LINE L1 5579 5674 -500 6 1037 1436 51 0 22 chr9 59263787 59263968 -64812204 + B2_Mm2 SINE B2 1 177 -18 6 1037 1776 185 58 50 chr9 59265017 59265415 -64810757 - MTC LTR MaLR -20 401 1 6 1037 524 270 94 7 chr9 59266371 59266509 -64809663 + RSINE1 SINE B4 4 153 -12 6 1037 238 247 234 11 chr9 59266633 59266821 -64809351 + L1M5 LINE L1 5522 5751 -411 6 1037 329 291 26 60 chr9 59266922 59267039 -64809133 + RSINE1 SINE B4 38 150 -15 6 1037 22 0 0 0 chr9 59267077 59267099 -64809073 + AT_rich Low_complexity Low_complexity 1 22 0 6 1037 234 116 0 0 chr9 59267421 59267464 -64808708 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1037 412 231 77 0 chr9 59267681 59267772 -64808400 + B1F1 SINE Alu 1 98 -51 6 1037 227 189 0 0 chr9 59268248 59268285 -64807887 + ID4_ SINE ID 2 38 -45 6 1037 359 283 93 31 chr9 59269338 59269531 -64806641 + L1M4b LINE L1 1328 1532 -5802 6 1037 22 0 0 0 chr9 59269553 59269575 -64806597 + AT_rich Low_complexity Low_complexity 1 22 0 6 1037 520 44 0 0 chr9 59269766 59269834 -64806338 + B1_Mur4 SINE Alu 82 149 -1 6 1037 227 125 0 59 chr9 59269834 59269885 -64806287 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 6 1037 351 277 127 42 chr9 59270072 59270238 -64805934 + B4A SINE B4 46 225 -67 6 1037 1217 42 0 0 chr9 59270322 59270465 -64805707 + B1_Mus2 SINE Alu 5 147 0 6 1037 392 208 0 13 chr9 59270488 59270566 -64805606 + B3A SINE B2 81 157 -41 6 1037 385 219 96 12 chr9 59270561 59270644 -64805528 + PB1D9 SINE Alu 18 107 -13 6 1037 27 0 0 0 chr9 59270678 59270705 -64805467 + AT_rich Low_complexity Low_complexity 1 27 0 6 1037 201 108 0 0 chr9 59270836 59270873 -64805299 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1037 342 0 0 0 chr9 59271205 59271243 -64804929 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1037 338 264 27 106 chr9 59271272 59271455 -64804717 - B4 SINE B4 -20 272 5 6 1037 381 241 279 50 chr9 59271992 59272132 -64804040 - ID_B1 SINE B4 -8 216 45 6 1037 382 154 0 15 chr9 59272246 59272312 -64803860 + B1_Mus2 SINE Alu 77 141 -6 6 1037 291 224 0 0 chr9 59272324 59272400 -64803772 + G-rich Low_complexity Low_complexity 5 80 0 6 1037 320 274 12 12 chr9 59272409 59272494 -64803678 + RSINE1 SINE B4 2 86 -79 6 1037 1229 118 16 0 chr9 59272505 59272691 -64803481 + B2_Mm2 SINE B2 7 195 0 6 1037 1382 85 11 0 chr9 59272789 59272978 -64803194 + B2_Mm1t SINE B2 1 191 -2 6 1037 247 289 68 58 chr9 59273549 59273652 -64802520 - BC1_Mm scRNA scRNA -48 104 1 6 1037 217 281 31 0 chr9 59274014 59274078 -64802094 - L2a LINE L2 -5 3421 3356 6 1037 554 242 50 10 chr9 59274747 59274937 -64801235 + L1MB8 LINE L1 5357 5551 -746 6 1037 754 220 154 3 chr9 59275005 59275314 -64800858 - ORR1D1 LTR MaLR 0 374 19 6 1037 574 262 186 118 chr9 59275382 59275983 -64800189 + RMER13A LTR ERVK 95 736 -124 6 1037 587 280 96 79 chr9 59276035 59276493 -64799679 + L1MB8 LINE L1 5612 6077 -101 6 1037 1096 148 11 6 chr9 59276537 59276714 -64799458 + B2_Mm1t SINE B2 1 178 -15 6 1037 332 175 286 46 chr9 59276714 59276864 -64799308 + B2_Mm2 SINE B2 1 186 -9 6 1037 263 284 78 69 chr9 59277231 59277333 -64798839 + MT2B2 LTR ERVL 167 269 -315 6 1037 222 348 8 42 chr9 59277333 59277349 -64798823 + PB1D10 SINE Alu 3 116 -1 6 1037 256 291 0 37 chr9 59277869 59277951 -64798221 + 7SLRNA srpRNA srpRNA 228 306 -8 6 1037 374 236 94 129 chr9 59278183 59278353 -64797819 - B3A SINE B2 -7 191 28 6 1037 345 149 0 0 chr9 59278405 59278472 -64797700 + (T)n Simple_repeat Simple_repeat 1 67 0 6 1037 1179 62 0 0 chr9 59278473 59278618 -64797554 - B1_Mus2 SINE Alu -1 146 2 6 1037 293 215 204 20 chr9 59278913 59279012 -64797160 - B1_Mus2 SINE Alu -1 119 1 6 1037 597 71 293 0 chr9 59279106 59279205 -64796967 - B1_Mm SINE Alu -15 132 5 6 1037 32 0 0 0 chr9 59280826 59280858 -64795314 + AT_rich Low_complexity Low_complexity 1 32 0 6 1037 545 235 10 0 chr9 59280889 59280987 -64795185 - B1_Mur2 SINE Alu -46 103 5 6 1037 25 0 0 0 chr9 59281049 59281074 -64795098 + AT_rich Low_complexity Low_complexity 1 25 0 6 1037 260 320 9 99 chr9 59281123 59281136 -64795036 + MT2B2 LTR ERVL 154 156 -428 6 1037 408 297 42 45 chr9 59281136 59281285 -64794887 + PB1D10 SINE Alu 1 147 -2 6 1037 264 268 34 68 chr9 59281788 59281876 -64794296 + MTEb LTR MaLR 22 106 -253 6 1037 311 282 12 12 chr9 59282047 59282133 -64794039 + MTEb LTR MaLR 282 367 -12 6 1037 823 286 125 36 chr9 59282179 59282514 -64793658 + MTEa LTR MaLR 9 373 -6 6 1037 371 296 30 30 chr9 59282514 59282615 -64793557 + RSINE1 SINE B4 3 103 -62 6 1037 985 101 86 29 chr9 59282991 59283165 -64793007 - B2_Mm2 SINE B2 -10 185 2 6 1037 769 106 108 50 chr9 59283545 59283684 -64792488 - B1_Mus1 SINE Alu -1 147 1 6 1037 24 53 0 0 chr9 59285181 59285219 -64790953 + AT_rich Low_complexity Low_complexity 1 38 0 6 1037 365 248 8 41 chr9 59285399 59285521 -64790651 - PB1D9 SINE Alu 0 120 3 6 1037 587 241 69 34 chr9 59285896 59286143 -64790029 - B4 SINE B4 -15 277 3 6 1037 555 217 9 0 chr9 59286207 59286313 -64789859 - RSINE1 SINE B4 -55 110 4 6 1037 1091 55 7 0 chr9 59287169 59287314 -64788858 - B1_Mus2 SINE Alu 0 147 2 6 1037 430 244 90 26 chr9 59287323 59287482 -64788690 - B3A SINE B2 -8 185 19 6 1037 319 148 2 2 chr9 59287482 59287544 -64788628 + B1_Mur4 SINE Alu 1 62 -87 6 1037 411 21 0 0 chr9 59287554 59287602 -64788570 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1037 207 0 0 0 chr9 59287602 59287625 -64788547 + (CATG)n Simple_repeat Simple_repeat 2 24 0 6 1037 603 277 88 0 chr9 59287628 59287776 -64788396 - B3 SINE B2 -54 162 2 6 1037 360 0 0 0 chr9 59288323 59288363 -64787809 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1037 534 31 0 0 chr9 59288455 59288519 -64787653 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1037 180 0 0 0 chr9 59288641 59288661 -64787511 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1037 287 235 22 76 chr9 59289425 59289517 -64786655 + ID SINE ID 2 88 -136 6 1037 25 31 0 0 chr9 59289819 59289851 -64786321 + AT_rich Low_complexity Low_complexity 1 32 0 6 1037 420 264 180 27 chr9 59289897 59290080 -64786092 + B3 SINE B2 2 212 -4 6 1037 460 304 103 37 chr9 59290370 59290665 -64785507 - ORR1D2 LTR MaLR 0 370 1 6 1037 400 246 102 51 chr9 59290738 59290935 -64785237 - Tigger2b DNA MER2_type -305 421 215 6 1037 236 288 17 17 chr9 59291334 59291394 -64784778 - AluF_3 SINE Alu -115 196 137 6 1037 546 247 153 16 chr9 59291589 59291723 -64784449 + B3 SINE B2 1 148 -68 6 1037 279 0 0 0 chr9 59291723 59291754 -64784418 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1037 582 41 0 0 chr9 59291755 59291828 -64784344 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1037 546 247 153 16 chr9 59291828 59291880 -64784292 + B3 SINE B2 149 210 -6 6 1037 230 277 83 21 chr9 59291867 59291963 -64784209 - YREP_Mm Unknown Unknown -1454 358 257 6 1037 372 258 118 0 chr9 59291910 59292003 -64784169 + PB1D10 SINE Alu 8 111 -6 6 1037 393 227 1 51 chr9 59292024 59292136 -64784036 + B1_Mur2 SINE Alu 8 115 -34 6 1037 1345 79 10 64 chr9 59292160 59292363 -64783809 + B2_Mm2 SINE B2 1 192 -3 6 1037 277 319 84 11 chr9 59292835 59292930 -64783242 + RSINE1 SINE B4 3 104 -61 6 1037 891 154 0 26 chr9 59293574 59293727 -64782445 + B1_Mur3 SINE Alu 1 149 0 6 1037 470 239 11 0 chr9 59294145 59294237 -64781935 - PB1D10 SINE Alu -16 101 9 6 1037 285 29 0 0 chr9 59294967 59295001 -64781171 + (ATTG)n Simple_repeat Simple_repeat 4 37 0 6 1037 1074 81 0 39 chr9 59295001 59295156 -64781016 - B2_Mm2 SINE B2 -46 149 1 6 1037 228 313 142 22 chr9 59295506 59295640 -64780532 - RSINE1 SINE B4 -14 151 2 6 1037 1354 77 0 101 chr9 59296523 59296740 -64779432 + B2_Mm2 SINE B2 1 195 0 6 1037 1275 93 27 11 chr9 59296774 59296958 -64779214 + B2_Mm2 SINE B2 2 188 -7 6 1037 21 36 0 0 chr9 59296992 59297020 -64779152 + AT_rich Low_complexity Low_complexity 1 28 0 6 1037 516 32 0 0 chr9 59297326 59297388 -64778784 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 6 1037 428 327 9 35 chr9 59297388 59297502 -64778670 + B3A SINE B2 54 164 -34 6 1037 438 20 0 0 chr9 59297502 59297553 -64778619 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1037 288 291 25 12 chr9 59297862 59297942 -64778230 - ID4 SINE ID 0 83 3 6 1037 302 257 93 7 chr9 59297951 59298069 -64778103 - B1F SINE Alu -9 140 1 6 1037 230 269 0 69 chr9 59298132 59298204 -64777968 - PB1 SINE Alu -1 126 60 7 1037 21 0 0 0 chr9 59298445 59298466 -64777706 + AT_rich Low_complexity Low_complexity 1 21 0 7 1037 1020 60 30 0 chr9 59298812 59298946 -64777226 - B1_Mus1 SINE Alu -9 139 2 7 1037 521 217 92 8 chr9 59299005 59299135 -64777037 - B1_Mus2 SINE Alu 0 147 7 7 1037 227 187 169 23 chr9 59299186 59299281 -64776891 - L1MC LINE L1 -798 5348 5248 7 1037 1191 111 52 0 chr9 59299498 59299670 -64776502 + B2_Mm2 SINE B2 1 181 -14 7 1037 311 117 199 5 chr9 59299717 59299825 -64776347 + B2_Mm2 SINE B2 48 193 -2 7 1037 610 258 84 42 chr9 59300314 59300504 -64775668 + B3A SINE B2 1 198 0 7 1037 915 169 0 0 chr9 59300583 59300731 -64775441 - B1_Mus1 SINE Alu 0 148 1 7 1037 426 229 12 167 chr9 59301132 59301300 -64774872 + B1F2 SINE Alu 8 149 0 7 1037 381 277 32 0 chr9 59302342 59302436 -64773736 - PB1D10 SINE Alu -20 97 1 7 1037 285 343 105 0 chr9 59302712 59302817 -64773355 + PB1D10 SINE Alu 1 116 -1 7 1037 23 54 0 0 chr9 59302889 59302926 -64773246 + AT_rich Low_complexity Low_complexity 1 37 0 7 1037 425 220 110 0 chr9 59303180 59303280 -64772892 + PB1D7 SINE Alu 2 112 -8 7 1037 948 123 12 30 chr9 59303370 59303538 -64772634 + RMER17C LTR ERVK 245 409 -1 7 1037 1372 85 37 0 chr9 59303634 59303822 -64772350 + B2_Mm2 SINE B2 1 195 0 7 1037 295 322 0 136 chr9 59303995 59304135 -64772037 + ID_B1 SINE B4 49 169 -55 7 1037 460 237 0 31 chr9 59304052 59304148 -64772024 + B1_Mur3 SINE Alu 11 103 -46 7 1037 983 59 89 0 chr9 59304437 59304572 -64771600 + B1_Mm SINE Alu 1 147 0 7 1037 24 32 0 0 chr9 59304770 59304801 -64771371 + AT_rich Low_complexity Low_complexity 1 31 0 7 1037 371 356 40 6 chr9 59304819 59304959 -64771213 + B1F SINE Alu 1 150 0 7 1037 248 268 115 11 chr9 59305008 59305095 -64771077 - PB1D10 SINE Alu -1 116 21 7 1037 294 289 13 38 chr9 59305444 59305523 -64770649 - Tigger7 DNA MER2_type -11 2480 2404 7 1037 398 182 43 43 chr9 59305597 59305688 -64770484 + MTD-int LTR MaLR 1 91 -1167 7 1037 1581 202 89 21 chr9 59305688 59305953 -64770219 - MTD LTR MaLR 0 419 132 7 1037 222 37 0 0 chr9 59305953 59305980 -64770192 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 7 1037 1581 202 89 21 chr9 59305980 59306094 -64770078 - MTD LTR MaLR -288 131 14 7 1037 1257 27 0 0 chr9 59306094 59306242 -64769930 + B1_Mus1 SINE Alu 1 148 0 7 1037 3099 194 169 99 chr9 59306274 59306426 -64769746 + MTD-int LTR MaLR 91 218 -1040 7 1037 600 209 14 56 chr9 59306426 59306568 -64769604 + B1_Mur3 SINE Alu 2 137 -12 7 1037 3099 194 169 99 chr9 59306568 59307360 -64768812 + MTD-int LTR MaLR 219 1114 -144 7 1037 382 230 58 58 chr9 59307360 59307480 -64768692 - PB1D9 SINE Alu 0 120 1 7 1037 3099 194 169 99 chr9 59307480 59307626 -64768546 + MTD-int LTR MaLR 1115 1258 0 7 1037 1519 202 137 45 chr9 59307631 59308010 -64768162 + MTD LTR MaLR 6 419 0 7 1037 297 261 86 11 chr9 59308134 59308227 -64767945 + PB1D10 SINE Alu 1 100 -17 7 1037 264 303 13 0 chr9 59308231 59308307 -64767865 + ID4_ SINE ID 2 78 -5 7 1037 496 258 39 46 chr9 59308761 59308891 -64767281 + RSINE1 SINE B4 2 130 -35 7 1037 351 0 0 0 chr9 59308904 59308943 -64767229 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1037 300 250 98 20 chr9 59308978 59309080 -64767092 + L1MEf LINE L1 1630 1739 -4503 7 1037 846 113 90 39 chr9 59309259 59309415 -64766757 + B2_Mm2 SINE B2 6 169 -26 7 1037 194 91 0 29 chr9 59309420 59309454 -64766718 + (TAA)n Simple_repeat Simple_repeat 2 34 0 7 1037 248 250 130 14 chr9 59309456 59309525 -64766647 + ID_B1 SINE B4 94 170 -54 7 1037 244 277 157 0 chr9 59309525 59309539 -64766633 + PB1D10 SINE Alu 13 108 -9 7 1037 288 219 146 9 chr9 59309641 59309749 -64766423 + L1MEf LINE L1 5016 5139 -1007 7 1037 252 369 27 54 chr9 59309749 59309783 -64766389 + ID_B1 SINE B4 59 203 -21 7 1037 415 307 17 9 chr9 59309783 59309898 -64766274 + B1F SINE Alu 13 128 -21 7 1037 198 0 0 0 chr9 59310078 59310100 -64766072 + (TTTTTG)n Simple_repeat Simple_repeat 6 27 0 7 1037 1184 55 7 0 chr9 59310100 59310246 -64765926 - B1_Mus2 SINE Alu 0 147 1 7 1037 248 227 31 102 chr9 59310605 59310703 -64765469 + B4A SINE B4 6 96 -196 7 1037 646 171 47 39 chr9 59310897 59311025 -64765147 + B3A SINE B2 11 139 -59 7 1037 24 32 0 0 chr9 59311034 59311065 -64765107 + AT_rich Low_complexity Low_complexity 1 31 0 7 1037 722 229 0 0 chr9 59311122 59311244 -64764928 + B1_Mus1 SINE Alu 1 122 -26 7 1037 339 283 42 117 chr9 59311324 59311444 -64764728 + RSINE1 SINE B4 6 116 -49 7 1037 263 289 82 101 chr9 59311662 59311820 -64764352 - B2_Mm2 SINE B2 -4 191 37 7 1037 865 244 23 10 chr9 59311886 59312082 -64764090 - B3A SINE B2 0 216 8 7 1037 1082 125 22 33 chr9 59312455 59312637 -64763535 - B2_Mm2 SINE B2 -14 181 2 7 1037 411 188 227 10 chr9 59312791 59312888 -64763284 - B1_Mur3 SINE Alu -5 144 27 7 1037 228 67 0 0 chr9 59312911 59312941 -64763231 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1037 1394 59 11 11 chr9 59312950 59313139 -64763033 + B2_Mm2 SINE B2 2 190 -5 7 1037 290 279 25 0 chr9 59313483 59313562 -64762610 + ID4_ SINE ID 2 82 -1 7 1037 431 299 17 17 chr9 59313772 59313891 -64762281 - RSINE1 SINE B4 -43 122 4 7 1037 180 171 57 0 chr9 59314147 59314182 -64761990 - MIRm SINE MIR -195 81 45 7 1037 284 297 44 18 chr9 59315877 59315990 -64760182 - PB1D10 SINE Alu -1 116 1 7 1037 598 270 75 0 chr9 59315990 59316061 -64760111 - ID SINE ID -141 83 1 7 1037 681 296 91 75 chr9 59316842 59317240 -64758932 + RMER5 LTR ERV1 15 418 -116 7 1037 515 229 187 30 chr9 59317442 59317672 -64758500 - L1MB7 LINE L1 -35 6149 5884 7 1037 190 0 67 0 chr9 59317933 59317963 -64758209 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 7 1037 1105 83 0 0 chr9 59317966 59318110 -64758062 - B1_Mus2 SINE Alu -2 145 2 7 1037 369 269 167 0 chr9 59318571 59318679 -64757493 - B1F SINE Alu -21 128 3 7 1037 189 0 0 0 chr9 59318679 59318700 -64757472 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 7 1037 558 180 393 0 chr9 59320135 59320285 -64755887 - B3 SINE B2 -7 209 1 7 1037 301 44 0 0 chr9 59320289 59320334 -64755838 - B1_Mur4 SINE Alu 0 150 106 7 1037 484 316 101 11 chr9 59320456 59320645 -64755527 + B4A SINE B4 1 206 -86 7 1037 842 231 59 5 chr9 59320645 59320849 -64755323 + B3 SINE B2 2 216 0 7 1037 444 274 49 49 chr9 59321415 59321557 -64754615 - B1_Mur1 SINE Alu -7 142 1 7 1037 247 310 42 14 chr9 59321577 59321649 -64754523 - ID_B1 SINE B4 -119 105 32 7 1037 285 314 0 0 chr9 59321598 59321668 -64754504 - ID4_ SINE ID -2 81 12 7 1037 287 231 123 37 chr9 59321681 59321762 -64754410 - B1F SINE Alu -23 126 39 7 1037 605 213 0 136 chr9 59321983 59322130 -64754042 - B1_Mus1 SINE Alu -20 128 2 7 1037 312 248 0 215 chr9 59322008 59322152 -64754020 - MT2B LTR ERVL -344 257 145 7 1037 269 214 310 35 chr9 59322246 59322333 -64753839 - PB1D9 SINE Alu -7 113 3 7 1037 263 218 70 43 chr9 59322357 59322472 -64753700 - Lx8 LINE L1 0 7473 7356 7 1037 22 0 0 0 chr9 59322582 59322604 -64753568 + AT_rich Low_complexity Low_complexity 1 22 0 7 1037 282 322 33 64 chr9 59323065 59323211 -64752961 + MLT1D LTR MaLR 2 143 -362 7 1037 806 249 100 16 chr9 59323232 59323481 -64752691 + MLT1D LTR MaLR 223 492 -13 7 1037 673 125 125 0 chr9 59323483 59323595 -64752577 + B1_Mus1 SINE Alu 1 126 -22 7 1037 369 62 0 0 chr9 59323595 59323643 -64752529 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1037 846 147 0 22 chr9 59323878 59324017 -64752155 + B1_Mus1 SINE Alu 11 146 -2 7 1037 381 264 0 0 chr9 59324412 59324499 -64751673 + PB1D10 SINE Alu 23 109 -8 7 1037 275 273 0 18 chr9 59324684 59324740 -64751432 + ID4 SINE ID 20 74 -9 7 1037 244 281 18 0 chr9 59324777 59324830 -64751342 + B4 SINE B4 44 97 -195 7 1037 902 105 0 31 chr9 59324830 59325002 -64751170 + B2_Mm2 SINE B2 2 167 -26 7 1037 405 285 103 17 chr9 59325010 59325212 -64750960 + B4 SINE B4 75 276 -16 7 1037 456 246 62 18 chr9 59325301 59325413 -64750759 + PB1D9 SINE Alu 4 120 0 7 1037 320 157 0 0 chr9 59325470 59325521 -64750651 - B2_Mm2 SINE B2 -144 51 1 7 1037 346 274 45 45 chr9 59325576 59325687 -64750485 + B1F SINE Alu 38 148 -1 7 1037 239 259 19 0 chr9 59325694 59325748 -64750424 + ID2 SINE ID 3 57 -26 7 1037 632 239 14 21 chr9 59325856 59325997 -64750175 + B1_Mur2 SINE Alu 5 144 -5 7 1037 368 266 241 37 chr9 59326132 59326323 -64749849 - L1MEg LINE L1 -5036 1048 819 7 1037 342 218 123 47 chr9 59326323 59326429 -64749743 + B3 SINE B2 95 208 -8 7 1037 738 276 297 36 chr9 59326731 59327137 -64749035 - Charlie1a DNA MER1_type -641 814 301 7 1037 513 261 7 40 chr9 59327137 59327285 -64748887 + B1F1 SINE Alu 1 143 -6 7 1037 738 281 202 39 chr9 59327285 59327447 -64748725 - Charlie1a DNA MER1_type -1155 300 116 7 1037 667 268 0 0 chr9 59327603 59327745 -64748427 + B1_Mur1 SINE Alu 2 143 -6 7 1037 681 136 102 36 chr9 59327785 59327922 -64748250 + B1_Mur1 SINE Alu 1 146 -3 7 1037 493 208 126 16 chr9 59327965 59328092 -64748080 + B1_Mur3 SINE Alu 1 141 -8 7 1037 184 398 27 18 chr9 59328298 59328408 -64747764 - L2c LINE L2 -38 3349 3239 7 1037 949 82 8 0 chr9 59329179 59329313 -64746859 + B1_Mus1 SINE Alu 14 148 0 7 1037 540 159 27 36 chr9 59329920 59330031 -64746141 + B1_Mur2 SINE Alu 40 149 0 7 1037 577 239 45 44 chr9 59330298 59330516 -64745656 + B3A SINE B2 3 216 0 8 1037 261 299 8 93 chr9 59330583 59330701 -64745471 + PB1 SINE Alu 18 125 -2 8 1037 280 190 0 49 chr9 59330771 59330832 -64745340 + B1F SINE Alu 89 146 -3 8 1037 304 189 38 0 chr9 59330852 59330905 -64745267 + ID4_ SINE ID 5 59 -24 8 1037 697 190 13 47 chr9 59330986 59331135 -64745037 - B1_Mur2 SINE Alu 0 149 6 8 1037 346 323 15 8 chr9 59332721 59332855 -64743317 - B1_Mur1 SINE Alu -10 139 5 8 1037 255 61 0 0 chr9 59333890 59333923 -64742249 + (CCG)n Simple_repeat Simple_repeat 2 34 0 8 1037 258 306 0 0 chr9 59334037 59334145 -64742027 + (TCG)n Simple_repeat Simple_repeat 2 109 0 8 1037 207 250 0 16 chr9 59334307 59334368 -64741804 + G-rich Low_complexity Low_complexity 2 61 0 8 1037 293 372 16 40 chr9 59335824 59335950 -64740222 - RSINE1 SINE B4 -33 132 10 8 1037 252 0 0 0 chr9 59335950 59335978 -64740194 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1037 360 255 59 0 chr9 59335978 59336080 -64740092 - PB1D10 SINE Alu -9 108 1 8 1037 946 271 80 33 chr9 59336253 59336615 -64739557 - MTEa LTR MaLR 0 379 1 8 1037 1157 68 0 13 chr9 59337221 59337370 -64738802 + B1_Mus1 SINE Alu 2 148 0 8 1037 476 256 91 40 chr9 59337560 59337735 -64738437 + MTEb LTR MaLR 186 369 -10 8 1037 2109 264 80 71 chr9 59337755 59337905 -64738267 + MTEa-int LTR MaLR 648 798 -782 8 1037 360 0 0 0 chr9 59337905 59337945 -64738227 + (TAA)n Simple_repeat Simple_repeat 1 40 0 8 1037 2109 264 80 71 chr9 59337945 59338155 -64738017 + MTEa-int LTR MaLR 799 1030 -550 8 1037 472 304 0 0 chr9 59338155 59338267 -64737905 + PB1D9 SINE Alu 1 112 -8 8 1037 2109 264 80 71 chr9 59338267 59338679 -64737493 + MTEa-int LTR MaLR 1031 1428 -152 8 1037 900 317 85 9 chr9 59338830 59339161 -64737011 - Lx8 LINE L1 -184 7289 6934 8 1037 299 219 27 0 chr9 59339162 59339235 -64736937 + MTEa-int LTR MaLR 1501 1575 -5 8 1037 1127 263 13 36 chr9 59339254 59339558 -64736614 + MTEa LTR MaLR 27 323 -56 8 1037 3923 152 63 15 chr9 59339569 59339932 -64736240 - RMER6A LTR ERVK -3 753 385 8 1037 546 16 0 0 chr9 59339932 59339995 -64736177 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1037 3923 152 63 15 chr9 59339995 59340350 -64735822 - RMER6A LTR ERVK -372 384 1 8 1037 375 257 0 0 chr9 59340732 59340806 -64735366 + ID4 SINE ID 6 79 -4 8 1037 520 305 16 8 chr9 59340866 59340995 -64735177 + B1_Mur2 SINE Alu 14 143 -6 8 1037 491 268 43 7 chr9 59341068 59341207 -64734965 + B1_Mus1 SINE Alu 5 148 0 8 1037 793 278 109 15 chr9 59341372 59341639 -64734533 - B4A SINE B4 0 292 1 8 1037 791 201 0 0 chr9 59342172 59342316 -64733856 + B1_Mus1 SINE Alu 3 146 -2 8 1037 342 0 0 0 chr9 59342321 59342359 -64733813 + (TTA)n Simple_repeat Simple_repeat 3 40 0 8 1037 245 299 204 10 chr9 59342374 59342472 -64733700 + PB1 SINE Alu 1 117 -10 8 1037 345 256 13 38 chr9 59342472 59342577 -64733595 + PB1D10 SINE Alu 7 111 -6 8 1037 715 191 7 0 chr9 59343028 59343169 -64733003 - B1_Mus2 SINE Alu 0 147 6 8 1037 22 0 0 0 chr9 59343189 59343211 -64732961 + AT_rich Low_complexity Low_complexity 1 22 0 8 1037 372 125 0 0 chr9 59343211 59343275 -64732897 + (TATG)n Simple_repeat Simple_repeat 1 64 0 8 1037 768 197 27 0 chr9 59343285 59343432 -64732740 - B3 SINE B2 -65 151 1 8 1037 312 294 0 0 chr9 59343879 59343947 -64732225 + ID_B1 SINE B4 129 196 -28 8 1037 280 333 31 0 chr9 59343947 59343972 -64732200 + B1F SINE Alu 48 143 -6 8 1037 3614 220 58 7 chr9 59343972 59344788 -64731384 - MurERV4-int LTR ERVK -1398 3862 3006 8 1037 520 310 32 0 chr9 59345128 59345283 -64730889 + RSINE1 SINE B4 4 163 -2 8 1037 244 304 0 28 chr9 59346045 59346116 -64730056 + ID2 SINE ID 2 70 -13 8 1037 667 252 48 0 chr9 59346346 59346493 -64729679 + RSINE1 SINE B4 3 156 -9 8 1037 4270 86 84 20 chr9 59346830 59347161 -64729011 - Lx3A LINE L1 -699 6282 5914 8 1037 207 0 0 0 chr9 59347161 59347184 -64728988 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 8 1037 4320 75 40 3 chr9 59347184 59347796 -64728376 - Lx3A LINE L1 -1068 5913 5285 8 1037 3628 60 16 0 chr9 59347796 59348245 -64727927 + Lx3_Mus LINE L1 6305 6760 -249 8 1037 693 220 50 0 chr9 59348630 59348771 -64727401 - B1_Mur2 SINE Alu 0 149 2 8 1037 949 123 14 14 chr9 59348829 59348977 -64727195 + B1_Mur4 SINE Alu 3 150 0 8 1037 239 246 0 90 chr9 59349071 59349138 -64727034 + 5S rRNA rRNA 23 83 -38 8 1037 1415 73 17 0 chr9 59349380 59349557 -64726615 + B2_Mm2 SINE B2 2 181 -14 8 1037 465 19 0 0 chr9 59350078 59350132 -64726040 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1037 896 189 0 0 chr9 59350133 59350281 -64725891 - B1_Mus1 SINE Alu 0 148 1 8 1037 210 207 0 0 chr9 59350511 59350569 -64725603 + CT-rich Low_complexity Low_complexity 4 61 0 8 1037 775 272 18 56 chr9 59350818 59351102 -64725070 - B4A SINE B4 -19 273 1 8 1037 328 257 49 28 chr9 59351193 59351306 -64724866 + PB1D10 SINE Alu 3 115 -2 8 1037 414 286 15 15 chr9 59351329 59351464 -64724708 - MT2A LTR ERVL -372 161 27 8 1037 395 297 12 66 chr9 59351709 59351875 -64724297 + MIRb SINE MIR 112 268 0 8 1037 277 299 240 10 chr9 59352244 59352423 -64723749 + B4 SINE B4 7 230 -62 8 1037 487 219 23 175 chr9 59352423 59352464 -64723708 + B3A SINE B2 1 40 -158 8 1037 1190 48 7 0 chr9 59352464 59352609 -64723563 + B1_Mus2 SINE Alu 1 146 -1 8 1037 487 219 23 175 chr9 59352609 59352744 -64723428 + B3A SINE B2 41 150 -48 8 1037 1837 137 12 68 chr9 59352755 59353092 -64723080 - ORR1A3 LTR MaLR -8 318 1 8 1037 10184 121 98 76 chr9 59353092 59355011 -64721161 - ORR1A3-int LTR MaLR 0 1963 1 8 1037 1736 149 9 65 chr9 59355011 59355348 -64720824 - ORR1A3 LTR MaLR -8 318 1 8 1037 1535 59 0 11 chr9 59355431 59355620 -64720552 - B2_Mm1a SINE B2 -6 187 1 8 1037 1007 111 14 0 chr9 59355624 59355768 -64720404 - B1_Mus2 SINE Alu 0 147 2 8 1037 294 245 96 78 chr9 59355890 59355985 -64720187 + PB1D10 SINE Alu 1 103 -14 8 1037 252 0 0 0 chr9 59355985 59356013 -64720159 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1037 294 245 96 78 chr9 59356013 59356032 -64720140 + PB1D10 SINE Alu 104 117 0 8 1037 324 48 0 0 chr9 59356220 59356262 -64719910 + (AGGGGG)n Simple_repeat Simple_repeat 2 43 0 8 1037 991 91 0 0 chr9 59356557 59356700 -64719472 + ORR1A2 LTR MaLR 1 143 -184 8 1037 612 197 126 7 chr9 59357426 59357569 -64718603 + B3 SINE B2 28 187 -29 8 1037 1321 99 11 0 chr9 59357729 59357911 -64718261 + B2_Mm1t SINE B2 1 184 -9 8 1037 692 219 95 86 chr9 59357915 59358125 -64718047 - B3 SINE B2 -4 212 1 8 1037 527 279 63 19 chr9 59358134 59358339 -64717833 + L1ME2 LINE L1 5636 5849 -315 8 1037 774 236 89 35 chr9 59358412 59358614 -64717558 - ID_B1 SINE B4 -11 213 1 8 1037 209 327 0 0 chr9 59359260 59359315 -64716857 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1037 252 329 37 0 chr9 59359485 59359567 -64716605 + ORR1E LTR MaLR 1 85 -274 8 1037 1191 41 0 7 chr9 59359653 59359801 -64716371 + B1_Mus2 SINE Alu 1 147 0 8 1037 198 0 0 0 chr9 59359801 59359823 -64716349 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1037 396 320 32 19 chr9 59359823 59359979 -64716193 + B3A SINE B2 27 184 -14 8 1037 1842 104 7 22 chr9 59360015 59360268 -64715904 + Lx3A LINE L1 6712 6966 -15 8 1037 198 0 0 0 chr9 59360268 59360290 -64715882 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 8 1037 1842 104 7 22 chr9 59360290 59360310 -64715862 + Lx3A LINE L1 6967 6981 0 8 1037 847 156 57 0 chr9 59360331 59360472 -64715700 + B1_Mur2 SINE Alu 1 149 0 8 1037 345 24 0 0 chr9 59360488 59360530 -64715642 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1037 226 26 50 50 chr9 59360737 59360777 -64715395 + B1_Mus2 SINE Alu 20 59 -88 8 1037 357 275 0 0 chr9 59360782 59360960 -64715212 + GA-rich Low_complexity Low_complexity 2 179 0 8 1037 650 112 0 0 chr9 59360963 59361061 -64715111 + B1_Mm SINE Alu 42 139 -8 8 1037 1016 38 0 0 chr9 59361071 59361202 -64714970 + B1_Mus2 SINE Alu 7 137 -10 8 1037 204 40 0 0 chr9 59361227 59361252 -64714920 + (CATA)n Simple_repeat Simple_repeat 2 26 0 8 1037 432 283 8 24 chr9 59361471 59361594 -64714578 + B4A SINE B4 110 230 -62 8 1037 720 225 74 10 chr9 59361595 59361797 -64714375 + B3 SINE B2 2 216 0 8 1037 378 324 92 38 chr9 59362076 59362615 -64713557 - L1MC4 LINE L1 -81 7961 7368 8 1037 701 279 0 50 chr9 59362830 59363011 -64713161 - B3A SINE B2 -24 174 3 8 1037 246 272 99 0 chr9 59363048 59363129 -64713043 - PB1 SINE Alu -38 89 1 8 1037 1438 93 0 10 chr9 59363198 59363393 -64712779 - B2_Mm1a SINE B2 0 193 1 8 1037 834 119 15 0 chr9 59363398 59363532 -64712640 - B1_Mus2 SINE Alu 0 147 12 8 1037 22 0 0 0 chr9 59363606 59363628 -64712544 + AT_rich Low_complexity Low_complexity 1 22 0 8 1037 767 232 46 15 chr9 59363630 59363827 -64712345 - B3 SINE B2 -9 207 5 8 1037 423 263 32 19 chr9 59363875 59364030 -64712142 + MTE2b LTR MaLR 6 162 -217 8 1037 919 112 7 15 chr9 59364256 59364392 -64711780 + B1_Mus1 SINE Alu 2 136 -12 8 1037 778 192 66 28 chr9 59364394 59364576 -64711596 + B3 SINE B2 28 216 0 8 1037 910 252 44 5 chr9 59364593 59364796 -64711376 - ID_B1 SINE B4 -13 211 1 8 1037 408 296 107 76 chr9 59364999 59365262 -64710910 - B4A SINE B4 -2 290 20 8 1037 385 145 0 0 chr9 59365825 59365887 -64710285 - B1_Mus2 SINE Alu -11 136 75 8 1037 558 314 0 7 chr9 59366230 59366371 -64709801 + B3A SINE B2 21 160 -38 8 1037 306 0 0 0 chr9 59366382 59366416 -64709756 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1037 261 0 0 0 chr9 59366416 59366444 -64709728 + (GA)n Simple_repeat Simple_repeat 2 30 0 8 1037 298 222 86 0 chr9 59366597 59366678 -64709494 - B4A SINE B4 -203 89 2 9 1037 183 307 53 0 chr9 59367185 59367260 -64708912 + MIR SINE MIR 48 126 -136 9 1037 708 182 35 0 chr9 59368108 59368251 -64707921 + B1F1 SINE Alu 1 148 -1 9 1037 275 287 160 0 chr9 59368406 59368500 -64707672 - PB1D10 SINE Alu -8 109 1 9 1037 203 79 26 0 chr9 59368710 59368748 -64707424 + (TA)n Simple_repeat Simple_repeat 1 39 0 9 1037 1189 75 0 0 chr9 59368811 59368958 -64707214 - B1_Mm SINE Alu 0 147 1 9 1037 204 91 61 0 chr9 59368968 59369001 -64707171 + T-rich Low_complexity Low_complexity 2 36 0 9 1037 530 248 41 34 chr9 59369002 59369148 -64707024 - ID_B1 SINE B4 0 224 78 9 1037 739 113 104 8 chr9 59369261 59369386 -64706786 + B1_Mur1 SINE Alu 12 148 -1 9 1037 383 325 0 8 chr9 59369415 59369536 -64706636 + ID_B1 SINE B4 92 211 -13 9 1037 1100 111 6 0 chr9 59369536 59369707 -64706465 + (GAA)n Simple_repeat Simple_repeat 1 172 0 9 1037 632 261 44 0 chr9 59369775 59369955 -64706217 + B3A SINE B2 1 188 -10 9 1037 991 151 11 16 chr9 59370145 59370327 -64705845 - B2_Mm2 SINE B2 -12 183 3 9 1037 1385 80 0 36 chr9 59370354 59370548 -64705624 + B2_Mm2 SINE B2 1 187 -8 9 1037 469 212 30 0 chr9 59371089 59371188 -64704984 + RSINE1 SINE B4 2 103 -62 9 1037 318 26 0 0 chr9 59371240 59371279 -64704893 + (TC)n Simple_repeat Simple_repeat 1 39 0 9 1037 288 0 0 0 chr9 59371279 59371310 -64704862 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1037 498 264 9 0 chr9 59371321 59371427 -64704745 - PB1D10 SINE Alu -9 108 2 9 1037 202 143 24 0 chr9 59371427 59371469 -64704703 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 1037 1076 34 0 175 chr9 59371469 59371568 -64704604 - B1_Mm SINE Alu 0 147 65 9 1037 1650 42 0 0 chr9 59371568 59371760 -64704412 + B2_Mm1a SINE B2 2 193 0 9 1037 1076 34 0 175 chr9 59371760 59371837 -64704335 - B1_Mm SINE Alu -83 64 2 9 1037 327 244 32 32 chr9 59371891 59371984 -64704188 - PB1D7 SINE Alu -27 93 1 9 1037 418 240 139 0 chr9 59371984 59372048 -64704124 - ID SINE ID -141 83 2 9 1037 1041 124 60 22 chr9 59372905 59373087 -64703085 + B2_Mm2 SINE B2 2 190 -5 9 1037 388 126 0 22 chr9 59373384 59373473 -64702699 + (GA)n Simple_repeat Simple_repeat 1 87 0 9 1037 450 312 44 76 chr9 59374162 59374387 -64701785 - B4A SINE B4 -2 290 73 9 1037 1294 87 55 0 chr9 59374420 59374603 -64701569 - B2_Mm2 SINE B2 -1 194 2 9 1037 478 260 138 44 chr9 59374630 59374811 -64701361 - B3A SINE B2 0 198 1 9 1037 579 246 8 8 chr9 59375227 59375354 -64700818 + B1F SINE Alu 7 133 -16 9 1037 214 192 18 55 chr9 59375347 59375402 -64700770 + PB1D7 SINE Alu 68 120 0 9 129 757 216 25 61 chr9 59375457 59375654 -64700518 + Lx8 LINE L1 6363 6552 -921 9 1038 361 113 0 0 chr9 59376112 59376165 -64700007 + B2_Mm2 SINE B2 2 54 -141 9 1038 547 198 60 8 chr9 59376153 59376270 -64699902 + RLTR18B LTR ERVK 386 508 -4 9 1038 372 138 0 0 chr9 59376499 59376564 -64699608 + (T)n Simple_repeat Simple_repeat 1 65 0 9 1038 1202 68 0 0 chr9 59376564 59376710 -64699462 - B1_Mus1 SINE Alu 0 148 3 9 1038 22 0 0 0 chr9 59377027 59377049 -64699123 + AT_rich Low_complexity Low_complexity 1 22 0 9 1038 347 206 146 42 chr9 59377071 59377167 -64699005 + PB1D10 SINE Alu 4 109 -8 9 1038 1270 179 77 72 chr9 59377232 59377635 -64698537 - RMER16 LTR ERVK 0 533 1 9 1038 712 234 67 15 chr9 59377873 59378068 -64698104 - B3 SINE B2 -11 205 1 9 1038 602 271 159 20 chr9 59378509 59378761 -64697411 + B4A SINE B4 6 292 0 9 1038 24 67 0 0 chr9 59378937 59378982 -64697190 + AT_rich Low_complexity Low_complexity 1 45 0 9 1038 290 297 13 7 chr9 59379782 59379874 -64696298 + PB1D10 SINE Alu 13 101 -46 9 1038 242 176 39 0 chr9 59379877 59379928 -64696244 + GA-rich Low_complexity Low_complexity 2 54 0 9 1038 677 257 19 82 chr9 59379928 59380136 -64696036 + B3 SINE B2 1 195 -21 9 1038 1031 100 134 6 chr9 59380180 59380351 -64695821 + B2_Mm2 SINE B2 2 194 -1 9 1038 559 252 64 7 chr9 59380800 59380940 -64695232 + B1_Mur1 SINE Alu 1 148 -1 9 1038 1090 77 28 0 chr9 59381101 59381244 -64694928 + B1_Mus1 SINE Alu 2 148 0 9 1038 231 167 0 0 chr9 59381244 59381286 -64694886 + A-rich Low_complexity Low_complexity 1 42 0 9 1038 706 190 29 7 chr9 59381400 59381538 -64694634 - B3A SINE B2 -56 142 2 9 1038 566 322 63 26 chr9 59382403 59382671 -64693501 + B4A SINE B4 15 292 0 9 1038 665 232 117 15 chr9 59382987 59383184 -64692988 + MTD LTR MaLR 201 417 -2 9 1038 786 235 64 15 chr9 59383261 59383464 -64692708 + B3 SINE B2 1 213 -3 9 1038 346 250 33 49 chr9 59383475 59383597 -64692575 + PB1D9 SINE Alu 1 120 0 9 1038 684 277 36 5 chr9 59383685 59383881 -64692291 + ID_B1 SINE B4 2 203 -21 9 1038 342 288 58 36 chr9 59383767 59383904 -64692268 + B1F1 SINE Alu 5 144 -5 9 1038 733 182 0 14 chr9 59384068 59384207 -64691965 - B1_Mur2 SINE Alu -1 148 12 9 1038 806 172 0 0 chr9 59384216 59384344 -64691828 + B1_Mur3 SINE Alu 11 138 -11 9 1038 216 0 0 0 chr9 59384344 59384368 -64691804 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1038 308 293 0 0 chr9 59384389 59384464 -64691708 + MTEb LTR MaLR 5 79 -300 9 1038 1031 161 0 57 chr9 59384472 59384683 -64691489 - ORR1C2 LTR MaLR -12 372 174 9 1038 221 83 0 27 chr9 59384686 59384723 -64691449 + (GGAGA)n Simple_repeat Simple_repeat 4 39 0 9 1038 974 175 0 30 chr9 59384734 59384934 -64691238 - ORR1C2 LTR MaLR -190 194 1 9 1038 810 204 26 57 chr9 59384934 59385162 -64691010 + MTEb LTR MaLR 114 334 -45 9 1038 821 169 7 26 chr9 59385197 59385349 -64690823 - B1_Mur4 SINE Alu -1 149 1 9 1038 472 185 0 0 chr9 59386080 59386161 -64690011 - RLTR18B LTR ERVK -6 506 426 9 1038 646 256 60 40 chr9 59386278 59386477 -64689695 + ID_B1 SINE B4 4 206 -18 9 1038 1610 6 55 0 chr9 59386508 59386690 -64689482 + B2_Mm1a SINE B2 2 193 0 9 1038 220 347 0 0 chr9 59386821 59386893 -64689279 - ID4 SINE ID -8 75 4 9 1038 220 329 0 48 chr9 59386937 59387020 -64689152 - B1F1 SINE Alu -70 79 1 9 1038 342 311 33 0 chr9 59387020 59387116 -64689056 - B1F SINE Alu -41 108 9 9 1038 414 0 0 0 chr9 59388040 59388086 -64688086 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 9 1038 446 282 115 33 chr9 59388610 59388793 -64687379 + ID_B1 SINE B4 17 214 -10 9 1038 211 354 62 0 chr9 59389499 59389564 -64686608 + ID4 SINE ID 4 72 -11 9 1038 497 216 9 35 chr9 59389841 59389956 -64686216 + B1_Mur1 SINE Alu 24 135 -14 9 1038 411 132 0 0 chr9 59389963 59390031 -64686141 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1038 1203 68 0 0 chr9 59390183 59390330 -64685842 + B1_Mus1 SINE Alu 2 148 0 9 1038 291 220 0 0 chr9 59391466 59391525 -64684647 + ID SINE ID 5 63 -161 9 1038 424 154 0 0 chr9 59391554 59391619 -64684553 + ID_B1 SINE B4 124 188 -36 9 1038 249 235 0 105 chr9 59391619 59391630 -64684542 + PB1D10 SINE Alu 43 110 -7 9 1038 333 0 0 0 chr9 59392470 59392507 -64683665 + (GGA)n Simple_repeat Simple_repeat 1 37 0 9 1038 323 286 268 14 chr9 59393116 59393325 -64682847 + L1M5 LINE L1 4904 5165 -981 9 1038 1224 61 0 0 chr9 59393333 59393481 -64682691 + B1_Mus1 SINE Alu 1 148 0 9 1038 375 78 0 0 chr9 59393481 59393532 -64682640 + (GAAAA)n Simple_repeat Simple_repeat 4 54 0 9 1038 384 324 29 0 chr9 59393553 59393658 -64682514 + PB1D7 SINE Alu 5 112 -8 9 1038 1375 73 10 10 chr9 59393843 59394036 -64682136 + B2_Mm2 SINE B2 2 194 -1 9 1038 400 106 106 0 chr9 59394188 59394254 -64681918 - B2_Mm2 SINE B2 -6 189 117 9 1038 810 219 100 20 chr9 59394563 59394763 -64681409 + B3 SINE B2 1 216 0 9 1038 311 228 67 38 chr9 59394960 59395065 -64681107 + L2b LINE L2 3242 3349 -26 9 1038 563 273 155 10 chr9 59395652 59395852 -64680320 - L2c LINE L2 0 3387 3159 9 1038 246 277 0 88 chr9 59396146 59396237 -64679935 - ID4 SINE ID 0 83 1 9 1038 534 31 0 0 chr9 59396585 59396649 -64679523 + (GA)n Simple_repeat Simple_repeat 2 65 0 9 1038 1235 192 103 65 chr9 59396826 59397214 -64678958 - RMER16 LTR ERVK 0 533 1 9 1038 189 0 0 0 chr9 59397214 59397235 -64678937 + (GGA)n Simple_repeat Simple_repeat 2 22 0 9 1038 777 182 14 21 chr9 59397325 59397465 -64678707 - B1_Mur1 SINE Alu -1 148 10 9 1038 318 283 9 53 chr9 59397556 59397670 -64678502 + L2c LINE L2 3262 3385 -2 9 1038 294 381 58 20 chr9 59397871 59398028 -64678144 - MIRb SINE MIR -69 193 28 9 1038 706 252 111 30 chr9 59398485 59398755 -64677417 - B4A SINE B4 0 292 1 9 1038 182 216 78 0 chr9 59399649 59399700 -64676472 + MIRm SINE MIR 189 243 -33 9 1038 421 279 81 0 chr9 59400828 59400939 -64675233 + PB1D7 SINE Alu 1 120 0 9 1038 198 0 0 0 chr9 59400952 59400974 -64675198 + (TAA)n Simple_repeat Simple_repeat 2 23 0 9 1038 621 252 0 9 chr9 59401351 59401492 -64674680 + B1F2 SINE Alu 6 144 -5 9 1038 1118 95 0 0 chr9 59402242 59402390 -64673782 + B1_Mur3 SINE Alu 1 148 -1 9 1038 732 307 59 42 chr9 59402784 59403070 -64673102 - B4A SINE B4 0 292 2 9 1038 439 285 45 54 chr9 59403393 59403527 -64672645 + PB1 SINE Alu 3 117 0 1 1038 3612 24 7 0 chr9 59403793 59404209 -64671963 - L1Md_F3 LINE L1 0 6584 6166 1 1038 227 288 96 78 chr9 59404450 59404616 -64671556 + LTR50 LTR ERVL 349 517 -278 1 1038 279 294 99 18 chr9 59406280 59406312 -64669860 + B4A SINE B4 173 203 -89 1 1038 1512 133 70 192 chr9 59406312 59406411 -64669761 - ORR1B2 LTR MaLR -1 366 310 1 1038 1073 22 89 0 chr9 59406411 59406546 -64669626 - B1_Mus2 SINE Alu 0 147 1 1 1038 1512 133 70 192 chr9 59406546 59406863 -64669309 - ORR1B2 LTR MaLR -58 309 1 1 1038 279 294 99 18 chr9 59406863 59406941 -64669231 + B4A SINE B4 204 291 -1 1 1038 622 262 169 22 chr9 59407552 59407735 -64668437 + B3 SINE B2 1 210 -6 1 1038 239 125 42 0 chr9 59407748 59407796 -64668376 + (TATG)n Simple_repeat Simple_repeat 3 52 0 1 1038 281 305 104 10 chr9 59407805 59407901 -64668271 + B1F1 SINE Alu 2 106 -43 1 1038 219 286 139 144 chr9 59408011 59408061 -64668111 + B4 SINE B4 57 200 -92 1 1038 660 133 142 0 chr9 59408061 59408181 -64667991 + B1_Mus2 SINE Alu 11 147 0 1 1038 268 195 11 163 chr9 59409180 59409272 -64666900 + B3A SINE B2 28 105 -93 1 1038 186 309 223 49 chr9 59411855 59412039 -64664133 - MIRb SINE MIR -34 234 19 1 1038 405 0 0 0 chr9 59412179 59412224 -64663948 + (TTG)n Simple_repeat Simple_repeat 3 47 0 1 1038 262 248 139 52 chr9 59413269 59413384 -64662788 - B1F SINE Alu 0 149 25 1 1038 375 248 126 18 chr9 59413285 59413396 -64662776 - ID_B1 SINE B4 -11 213 91 1 1038 240 154 0 0 chr9 59414092 59414131 -64662041 - B3 SINE B2 -9 207 169 1 1038 267 317 148 0 chr9 59414142 59414243 -64661929 - B3A SINE B2 -82 116 1 1 1038 207 0 0 0 chr9 59414251 59414274 -64661898 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1038 288 0 0 0 chr9 59414276 59414308 -64661864 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1038 506 230 38 12 chr9 59414308 59414425 -64661747 - PB1D9 SINE Alu 0 120 5 1 1038 720 81 0 10 chr9 59414770 59414870 -64661302 - BC1_Mm scRNA scRNA -53 99 1 1 1038 256 276 69 0 chr9 59415765 59415823 -64660349 - ID2 SINE ID -20 63 2 1 1038 864 153 0 0 chr9 59416116 59416247 -64659925 + B1_Mus1 SINE Alu 12 142 -6 1 1038 468 234 138 15 chr9 59416251 59416381 -64659791 - ID_B1 SINE B4 0 224 83 1 1038 1292 262 24 81 chr9 59416846 59417228 -64658944 - MTE2b LTR MaLR -8 371 12 1 1038 373 299 110 15 chr9 59417433 59417569 -64658603 - B1F SINE Alu 0 149 1 1 1038 573 271 53 7 chr9 59417569 59417599 -64658573 - ID SINE ID -136 88 52 1 1038 213 37 0 115 chr9 59417966 59418027 -64658145 + (CTGGGG)n Simple_repeat Simple_repeat 2 55 0 1 1038 246 271 0 17 chr9 59418029 59418081 -64658091 + polypyrimidine Low_complexity Low_complexity 11 62 0 1 1038 2528 139 80 45 chr9 59418081 59418592 -64657580 - RLTR24 LTR ERV1 0 529 1 1 1038 390 205 24 12 chr9 59418605 59418689 -64657483 - B1F SINE Alu -48 101 17 1 1038 286 314 17 111 chr9 59418689 59418772 -64657400 - ID_B1 SINE B4 -41 178 28 1 1038 812 184 0 0 chr9 59419067 59419208 -64656964 + B1_Mus1 SINE Alu 2 142 -6 1 1038 487 290 75 54 chr9 59419419 59419605 -64656567 - B3A SINE B2 -3 195 6 1 1038 672 206 23 33 chr9 59419906 59420050 -64656122 + ID_B1 SINE B4 86 225 -67 1 1038 312 273 28 111 chr9 59419928 59420109 -64656063 - YREP_Mm Unknown Unknown -1518 294 129 1 1038 257 235 108 39 chr9 59420124 59420210 -64655962 + L1M5 LINE L1 4511 4607 -1539 1 1038 913 176 0 0 chr9 59420210 59420352 -64655820 - B1_Mur2 SINE Alu -5 144 3 1 1038 257 235 108 39 chr9 59420352 59420367 -64655805 + L1M5 LINE L1 4608 4619 -1527 1 1038 1535 59 27 0 chr9 59420452 59420639 -64655533 - B2_Mm1t SINE B2 -1 192 1 1 1038 25 31 0 0 chr9 59420663 59420695 -64655477 + AT_rich Low_complexity Low_complexity 1 32 0 1 1038 573 153 189 61 chr9 59420695 59420827 -64655345 - B1_Mur3 SINE Alu 0 149 1 1 1038 1278 34 0 0 chr9 59420925 59421071 -64655101 - B1_Mus1 SINE Alu 0 148 3 1 1038 424 235 37 0 chr9 59421153 59421234 -64654938 + ID_B1 SINE B4 78 161 -63 1 1038 403 216 72 94 chr9 59421232 59421300 -64654872 - RLTR20D LTR ERVK -433 135 73 1 1038 1520 23 51 0 chr9 59421300 59421476 -64654696 + B2_Mm1t SINE B2 2 186 -7 1 1038 403 216 72 94 chr9 59421476 59421545 -64654627 - RLTR20D LTR ERVK -496 72 1 1 1038 629 205 8 8 chr9 59421545 59421668 -64654504 + B1_Mur4 SINE Alu 28 150 0 1 1038 732 125 25 8 chr9 59421964 59422085 -64654087 + B1_Mus1 SINE Alu 14 136 -12 1 1038 248 0 0 30 chr9 59422092 59422125 -64654047 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 1 1038 386 237 0 13 chr9 59422433 59422510 -64653662 + B4A SINE B4 1 76 -216 1 1038 385 329 41 33 chr9 59423020 59423265 -64652907 + L1MCa LINE L1 1270 1516 -4992 1 1038 252 236 28 5 chr9 59423297 59423391 -64652781 + L1MCa LINE L1 4643 4737 -1584 1 1038 300 111 0 0 chr9 59423400 59423445 -64652727 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1038 669 203 63 31 chr9 59423445 59423572 -64652600 - RSINE1 SINE B4 -24 141 11 1 1038 312 194 48 0 chr9 59423613 59423675 -64652497 + L1MCa LINE L1 4734 4798 -1523 1 1038 933 242 237 25 chr9 59423686 59424017 -64652155 + MTD LTR MaLR 18 405 -14 1 1038 394 275 18 18 chr9 59424309 59424420 -64651752 + PB1D10 SINE Alu 2 112 -5 1 1038 422 292 35 0 chr9 59424498 59424611 -64651561 + ID_B1 SINE B4 76 192 -32 1 1038 796 170 75 94 chr9 59424605 59424806 -64651366 + B3 SINE B2 16 212 -4 1 1038 279 141 21 42 chr9 59424826 59424922 -64651250 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1038 393 309 28 14 chr9 59425055 59425196 -64650976 - B4A SINE B4 -148 144 2 1 1038 234 0 0 0 chr9 59426457 59426483 -64649689 + (CAGCC)n Simple_repeat Simple_repeat 1 26 0 1 1038 203 200 22 0 chr9 59426502 59426547 -64649625 + (CCCCAA)n Simple_repeat Simple_repeat 2 47 0 1 1038 357 283 128 50 chr9 59428782 59429024 -64647148 + L2 LINE L2 2794 3054 -365 1 1038 254 163 23 0 chr9 59429132 59429175 -64646997 - ID4_ SINE ID -38 45 2 1 1038 180 254 162 15 chr9 59429517 59429585 -64646587 + L3b LINE CR1 283 360 -122 1 1038 182 242 42 83 chr9 59431311 59431347 -64644825 + MIRc SINE MIR 76 107 -161 1 1038 679 215 44 0 chr9 59431347 59431482 -64644690 + B1_Mur2 SINE Alu 3 143 -6 1 1038 182 242 42 83 chr9 59431482 59431517 -64644655 + MIRc SINE MIR 108 143 -125 1 1038 1553 38 0 31 chr9 59431756 59431947 -64644225 + B2_Mm1a SINE B2 1 185 -8 1 1038 430 229 149 25 chr9 59432276 59432397 -64643775 - MIR SINE MIR -41 221 86 1 1038 180 319 52 71 chr9 59432886 59433041 -64643131 + L2 LINE L2 356 507 -2912 1 1038 206 245 41 0 chr9 59433416 59433465 -64642707 - L2 LINE L2 -608 2811 2761 1 1038 201 357 135 48 chr9 59434158 59434550 -64641622 + L2 LINE L2 2532 2957 -462 1 1038 851 293 60 13 chr9 59435073 59435308 -64640864 + B4A SINE B4 4 249 -43 1 1038 1092 204 11 0 chr9 59435297 59435488 -64640684 + B3 SINE B2 24 216 0 1 1038 249 119 0 0 chr9 59435502 59435544 -64640628 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1038 506 264 87 8 chr9 59435557 59435683 -64640489 + B1F SINE Alu 6 141 -8 1 1038 183 370 0 0 chr9 59435711 59435765 -64640407 + MIRb SINE MIR 5 58 -210 1 1038 279 302 12 0 chr9 59435842 59435937 -64640235 + MIRb SINE MIR 105 207 -61 1 1038 215 81 54 0 chr9 59436874 59436911 -64639261 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1038 269 245 20 69 chr9 59437226 59437327 -64638845 - MIRc SINE MIR -9 259 164 1 1038 286 290 61 9 chr9 59437916 59438019 -64638153 - MIRc SINE MIR -131 137 28 1 1038 784 251 0 11 chr9 59440669 59440850 -64635322 - B3A SINE B2 -16 182 4 1 1038 633 174 34 25 chr9 59440927 59441045 -64635127 - PB1D9 SINE Alu -1 119 1 1 1038 853 42 168 0 chr9 59441070 59441189 -64634983 - B2_Mm1a SINE B2 -53 140 2 1 1038 1590 32 5 11 chr9 59441200 59441389 -64634783 - B2_Mm1a SINE B2 -4 189 2 1 1038 649 241 15 0 chr9 59441649 59441786 -64634386 + B1F SINE Alu 11 149 0 1 1038 29 0 0 0 chr9 59441793 59441822 -64634350 + AT_rich Low_complexity Low_complexity 1 29 0 1 1038 571 321 0 13 chr9 59441834 59441992 -64634180 + RSINE1 SINE B4 8 163 -2 1 1038 198 0 0 0 chr9 59442082 59442104 -64634068 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1038 369 0 0 0 chr9 59442492 59442533 -64633639 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1038 257 276 4 24 chr9 59442704 59442789 -64633383 + B1F SINE Alu 1 80 -234 1 1038 336 254 15 0 chr9 59443126 59443193 -64632979 - PB1D10 SINE Alu -45 72 5 1 1038 863 216 9 23 chr9 59443196 59443406 -64632766 - B3 SINE B2 0 198 1 1 1038 683 126 59 0 chr9 59443424 59443559 -64632613 - Lx9 LINE L1 0 7644 7502 1 1038 254 219 0 27 chr9 59443871 59443946 -64632226 + CT-rich Low_complexity Low_complexity 3 75 0 1 1038 21 0 0 0 chr9 59444312 59444333 -64631839 + AT_rich Low_complexity Low_complexity 1 21 0 1 1038 532 259 6 58 chr9 59444333 59444353 -64631819 - B3A SINE B2 -9 189 171 1 1038 509 0 16 0 chr9 59444353 59444414 -64631758 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1038 532 259 6 58 chr9 59444414 59444565 -64631607 - B3A SINE B2 -28 170 27 1 1038 645 181 0 0 chr9 59444590 59444706 -64631466 - B1_Mus2 SINE Alu -8 139 24 1 1038 988 60 0 0 chr9 59445088 59445221 -64630951 - B1_Mus1 SINE Alu 0 148 16 1 1038 828 236 74 15 chr9 59445375 59445577 -64630595 + B3 SINE B2 1 214 -2 1 1038 315 204 118 0 chr9 59445586 59445679 -64630493 - L1MB2 LINE L1 -37 6134 6031 1 1038 1002 206 134 20 chr9 59445682 59445935 -64630237 + B4A SINE B4 5 286 -6 1 1038 809 328 56 3 chr9 59446003 59446361 -64629811 - L1MB2 LINE L1 -134 6037 5661 1 1038 663 222 80 35 chr9 59446367 59446568 -64629604 + L1MA7 LINE L1 5899 6108 -183 1 1038 859 129 6 6 chr9 59446604 59446783 -64629389 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1 1038 259 203 0 26 chr9 59446785 59446861 -64629311 + CT-rich Low_complexity Low_complexity 2 75 0 1 1038 552 170 0 0 chr9 59446908 59447014 -64629158 + CT-rich Low_complexity Low_complexity 1 106 0 1 1038 507 173 0 148 chr9 59447015 59447164 -64629008 - B1_Mur4 SINE Alu -2 148 22 1 1038 180 0 0 0 chr9 59447373 59447393 -64628779 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1038 660 290 0 6 chr9 59447522 59447678 -64628494 - B3 SINE B2 -61 155 1 1 1038 234 0 0 0 chr9 59448330 59448356 -64627816 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1038 995 30 0 8 chr9 59448356 59448481 -64627691 - B1_Mus2 SINE Alu -9 138 14 1 1038 180 111 0 0 chr9 59448859 59448886 -64627286 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1038 491 236 141 14 chr9 59448888 59449030 -64627142 - RSINE1 SINE B4 -2 163 4 1 1038 1675 36 0 0 chr9 59453059 59453251 -64622921 - B2_Mm1t SINE B2 -1 192 1 1 1038 216 302 0 0 chr9 59453647 59453710 -64622462 + G-rich Low_complexity Low_complexity 4 66 0 1 1038 26 30 0 0 chr9 59454096 59454129 -64622043 + AT_rich Low_complexity Low_complexity 1 33 0 1 1038 585 0 0 0 chr9 59454542 59454607 -64621565 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1038 534 338 65 62 chr9 59455624 59455914 -64620258 + B4 SINE B4 1 291 -1 1 1038 384 301 0 0 chr9 59456343 59456426 -64619746 + Cheshire DNA MER1_type 1 83 -2337 1 1038 21 0 0 0 chr9 59456431 59456452 -64619720 + AT_rich Low_complexity Low_complexity 1 21 0 1 1038 762 232 17 6 chr9 59456486 59456664 -64619508 - B3A SINE B2 -16 182 3 1 1038 219 36 0 0 chr9 59456668 59456696 -64619476 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1038 228 250 100 0 chr9 59456748 59456808 -64619364 + Cheshire DNA MER1_type 2358 2420 0 1 1038 348 330 141 11 chr9 59456878 59457062 -64619110 - MLT1K LTR MaLR 0 595 388 1 1038 744 281 73 85 chr9 59457880 59458280 -64617892 - MTE2a LTR MaLR 0 419 18 1 1038 2030 128 72 27 chr9 59458843 59459245 -64616927 + RMER6A LTR ERVK 1 420 -336 1 1038 278 254 0 0 chr9 59459758 59459813 -64616359 - LTR16D1 LTR ERVL -2 673 619 1 1038 295 348 135 33 chr9 59459830 59460074 -64616098 - LTR16D1 LTR ERVL -106 569 301 1 1038 560 309 60 21 chr9 59460461 59460696 -64615476 + B4A SINE B4 2 245 -47 1 1038 391 283 134 57 chr9 59460684 59460997 -64615175 - RMER10A LTR ERVL -4 438 98 1 1038 189 0 0 0 chr9 59460997 59461018 -64615154 + (G)n Simple_repeat Simple_repeat 1 21 0 1 1038 391 283 134 57 chr9 59461018 59461093 -64615079 - RMER10A LTR ERVL -345 97 20 1 1038 306 222 16 0 chr9 59461740 59461803 -64614369 + B3 SINE B2 84 147 -69 1 1038 408 40 0 0 chr9 59461808 59461858 -64614314 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1038 402 273 58 36 chr9 59462536 59462673 -64613499 - MTEb LTR MaLR 0 379 240 1 1038 713 301 39 19 chr9 59462849 59463056 -64613116 + B4A SINE B4 5 215 -77 1 1038 369 141 0 0 chr9 59463111 59463182 -64612990 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 1 1038 664 179 90 0 chr9 59463651 59463785 -64612387 - B1_Mur4 SINE Alu 0 150 5 1 1038 1049 144 32 5 chr9 59463790 59463978 -64612194 - B2_Mm2 SINE B2 -2 193 1 1 1038 765 236 14 29 chr9 59463998 59464207 -64611965 - B3 SINE B2 -9 207 2 1 1038 227 203 76 30 chr9 59464222 59464288 -64611884 - B1F SINE Alu 0 149 81 1 1038 297 190 35 0 chr9 59464231 59464289 -64611883 - ID_B1 SINE B4 -7 217 158 1 1038 987 58 7 0 chr9 59464295 59464432 -64611740 + B1_Mus1 SINE Alu 11 148 0 1 1038 196 53 26 26 chr9 59464438 59464477 -64611695 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1038 387 284 51 51 chr9 59464477 59464633 -64611539 - ID_B1 SINE B4 -68 156 1 1 1038 34 65 0 0 chr9 59465148 59465210 -64610962 + GC_rich Low_complexity Low_complexity 1 62 0 1 1038 983 97 39 7 chr9 59466708 59466863 -64609309 + B2_Mm2 SINE B2 1 160 -35 1 1038 283 271 0 18 chr9 59467232 59467329 -64608843 - B1_Mur2 SINE Alu -28 121 28 1 1038 690 169 96 0 chr9 59467344 59467480 -64608692 - B1_Mur4 SINE Alu 0 150 2 1 1038 213 256 0 0 chr9 59467481 59467520 -64608652 - PB1D9 SINE Alu -81 39 1 1 1038 27 29 0 0 chr9 59467587 59467621 -64608551 + AT_rich Low_complexity Low_complexity 1 34 0 1 1038 484 290 66 33 chr9 59467915 59468097 -64608075 - MER5A DNA MER1_type -1 188 1 1 1038 1394 76 32 0 chr9 59468655 59468840 -64607332 - B2_Mm2 SINE B2 -4 191 1 1 1038 22 56 0 0 chr9 59468905 59468941 -64607231 + AT_rich Low_complexity Low_complexity 1 36 0 1 1038 497 250 9 0 chr9 59468958 59469066 -64607106 - B3A SINE B2 -88 110 2 1 1038 237 321 60 68 chr9 59469077 59469194 -64606978 - PB1D10 SINE Alu -1 116 1 1 1038 1625 42 0 0 chr9 59469232 59469422 -64606750 + B2_Mm1a SINE B2 1 190 -3 1 1038 626 284 55 25 chr9 59469431 59469666 -64606506 + B4A SINE B4 1 242 -50 1 1038 450 275 0 0 chr9 59470556 59470665 -64605507 + PB1D7 SINE Alu 1 109 -11 1 1038 514 41 0 27 chr9 59471592 59471667 -64604505 + (TCCC)n Simple_repeat Simple_repeat 1 73 0 1 1038 338 238 140 47 chr9 59472860 59473010 -64603162 + RMER30 DNA MER1_type 5 168 -34 1 1038 270 73 0 0 chr9 59474248 59474289 -64601883 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 1 1038 286 259 113 149 chr9 59474314 59474482 -64601690 - RSINE1 SINE B4 -2 163 2 1 1038 748 202 75 70 chr9 59474535 59474748 -64601424 - B3 SINE B2 0 216 3 1 1038 263 238 32 0 chr9 59474748 59474811 -64601361 - L2 LINE L2 -563 2856 2792 1 1038 562 196 104 15 chr9 59474864 59474999 -64601173 + B1_Mur4 SINE Alu 2 148 -2 1 1038 781 196 169 0 chr9 59476736 59476920 -64599252 - B3 SINE B2 0 216 2 1 1038 325 97 271 150 chr9 59476993 59477126 -64599046 - B2_Mm2 SINE B2 0 195 47 1 1038 3500 28 2 0 chr9 59477470 59477865 -64598307 - MTA_Mm LTR MaLR 0 396 1 1 1038 1139 69 14 0 chr9 59477885 59478029 -64598143 - B1_Mus2 SINE Alu -1 146 1 1 1038 342 0 0 0 chr9 59478245 59478283 -64597889 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1038 588 153 27 0 chr9 59478283 59478394 -64597778 - B1_Mur4 SINE Alu -9 141 28 1 1038 1405 173 0 0 chr9 59479405 59479630 -64596542 - URR1B DNA MER1_type 0 225 1 1 1038 21 0 0 0 chr9 59479719 59479740 -64596432 + AT_rich Low_complexity Low_complexity 1 21 0 1 1038 288 53 0 0 chr9 59479798 59479836 -64596336 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1038 822 168 0 21 chr9 59480062 59480202 -64595970 - B1_Mur4 SINE Alu -13 137 1 1 1038 357 297 55 78 chr9 59480246 59480374 -64595798 - RSINE1 SINE B4 0 165 41 1 1038 783 212 14 14 chr9 59481449 59481597 -64594575 + B1F2 SINE Alu 2 149 0 1 1038 1379 64 15 56 chr9 59481649 59481847 -64594325 - B2_Mm2 SINE B2 -5 190 1 1 1038 1031 244 14 5 chr9 59482325 59482539 -64593633 - B3 SINE B2 0 216 1 1 1038 581 246 30 8 chr9 59483033 59483164 -64593008 + B1F SINE Alu 11 144 -5 1 1038 291 331 71 27 chr9 59483179 59483362 -64592810 + MIRb SINE MIR 19 209 -59 1 1038 893 294 99 83 chr9 59483371 59483876 -64592296 - MLT2B4 LTR ERVL -6 550 38 1 1038 840 108 31 0 chr9 59483882 59484011 -64592161 - B1_Mus1 SINE Alu -5 143 11 1 1038 188 203 0 48 chr9 59485253 59485315 -64590857 - L3 LINE CR1 -1996 2493 2435 1 1038 1025 245 15 42 chr9 59486258 59486522 -64589650 + B4 SINE B4 26 282 -10 1 1038 1126 83 6 29 chr9 59487004 59487020 -64589152 - B2_Mm1a SINE B2 -23 170 159 1 1038 696 83 0 0 chr9 59487020 59487116 -64589056 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 1 1038 1126 83 6 29 chr9 59487116 59487273 -64588899 - B2_Mm1a SINE B2 -35 158 1 1 1038 236 167 13 53 chr9 59487337 59487413 -64588759 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1038 1158 65 0 0 chr9 59488463 59488601 -64587571 + B1_Mus1 SINE Alu 2 139 -9 1 1038 243 0 0 0 chr9 59488601 59488628 -64587544 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1038 497 234 121 0 chr9 59489914 59490038 -64586134 - ID_B1 SINE B4 0 224 86 1 1038 398 274 10 10 chr9 59490565 59490668 -64585504 + PB1D10 SINE Alu 10 112 -5 1 1038 229 320 26 13 chr9 59490681 59490757 -64585415 + ID4_ SINE ID 5 81 -2 1 1038 507 239 26 0 chr9 59490906 59491023 -64585149 + B1_Mur1 SINE Alu 23 142 -7 1 1038 428 86 14 0 chr9 59491511 59491581 -64584591 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1038 545 191 0 0 chr9 59491593 59491687 -64584485 - B1_Mur4 SINE Alu -7 143 50 1 1038 1388 90 11 5 chr9 59491698 59491887 -64584285 - B2_Mm2 SINE B2 -4 191 2 1 1038 608 199 227 27 chr9 59492006 59492156 -64584016 + B3 SINE B2 1 180 -36 1 1038 26 30 0 0 chr9 59492156 59492189 -64583983 + AT_rich Low_complexity Low_complexity 1 33 0 1 1038 231 311 171 32 chr9 59492212 59492335 -64583837 + B1F1 SINE Alu 1 140 -9 1 1038 626 248 37 31 chr9 59492718 59492880 -64583292 - RSINE1 SINE B4 0 165 3 1 1038 382 326 48 44 chr9 59493154 59493461 -64582711 + B4 SINE B4 3 280 -12 1 1038 198 0 0 0 chr9 59494214 59494236 -64581936 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1038 1190 62 0 0 chr9 59494236 59494382 -64581790 - B1_Mus1 SINE Alu 0 148 3 1 1038 243 125 0 0 chr9 59494423 59494463 -64581709 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1038 1357 99 11 0 chr9 59494479 59494670 -64581502 - B2_Mm1t SINE B2 0 193 1 1 1038 472 208 98 11 chr9 59494698 59494834 -64581338 + B1_Mur1 SINE Alu 3 149 0 1 1038 23 0 0 0 chr9 59495255 59495278 -64580894 + AT_rich Low_complexity Low_complexity 1 23 0 1 1038 984 148 0 20 chr9 59495278 59495430 -64580742 + B1_Mur3 SINE Alu 1 149 0 1 1038 2613 88 62 0 chr9 59495832 59496247 -64579925 - RMER16 LTR ERVK 0 533 1 1 1038 372 335 50 68 chr9 59496389 59496610 -64579562 + L2b LINE L2 3171 3387 0 1 1038 1178 68 0 0 chr9 59498210 59498357 -64577815 + B1_Mus2 SINE Alu 1 147 0 1 1038 1357 87 16 5 chr9 59498416 59498602 -64577570 - B2_Mm2 SINE B2 -7 188 1 1 1038 729 227 7 14 chr9 59499161 59499304 -64576868 - B1_Mur1 SINE Alu -7 142 1 1 1038 235 47 93 0 chr9 59499420 59499463 -64576709 + (TTTTC)n Simple_repeat Simple_repeat 5 51 0 1 1038 356 209 12 0 chr9 59499460 59499546 -64576626 + CT-rich Low_complexity Low_complexity 4 90 0 1 1038 847 162 0 34 chr9 59499560 59499707 -64576465 - B1_Mur3 SINE Alu -6 143 2 1 1038 363 260 142 33 chr9 59500281 59500461 -64575711 - MIR SINE MIR -27 235 37 1 1038 430 266 68 45 chr9 59500484 59500539 -64575633 + CYRA11_Mm Unknown Y-chromosome 115 173 -444 2 1038 833 122 16 0 chr9 59500539 59500662 -64575510 - URR1B DNA MER1_type 0 225 101 3 1038 837 159 34 20 chr9 59501901 59502049 -64574123 - B1_Mur4 SINE Alu 0 150 1 4 1038 236 320 0 0 chr9 59502933 59502983 -64573189 - PB1D7 SINE Alu -69 51 2 5 1038 244 200 244 12 chr9 59506462 59506548 -64569624 + PB1D7 SINE Alu 3 108 -12 6 1039 24 0 0 0 chr9 59506777 59506801 -64569371 + AT_rich Low_complexity Low_complexity 1 24 0 7 1039 571 143 82 0 chr9 59506828 59506926 -64569246 + B1_Mus2 SINE Alu 31 136 -11 8 1039 207 0 0 0 chr9 59507388 59507411 -64568761 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1039 231 166 85 0 chr9 59507968 59508026 -64568146 + B1_Mur2 SINE Alu 83 148 -1 1 1039 252 312 95 21 chr9 59508058 59508153 -64568019 + ID_B1 SINE B4 48 149 -75 1 1039 241 222 15 60 chr9 59508662 59508729 -64567443 + RLTR25B LTR ERVK 422 485 -543 1 1039 636 69 46 0 chr9 59508693 59508780 -64567392 + B1_Mus2 SINE Alu 48 138 -9 1 1039 233 352 102 47 chr9 59510495 59510623 -64565549 + RSINE1 SINE B4 3 137 -28 1 1039 351 272 57 28 chr9 59511450 59511556 -64564616 + ID_B1 SINE B4 63 171 -53 1 1039 462 252 9 28 chr9 59511468 59511574 -64564598 + PB1D10 SINE Alu 5 108 -9 1 1039 235 178 260 0 chr9 59511832 59511905 -64564267 - LTR64 LTR ERV1 -31 497 406 1 1039 298 340 87 0 chr9 59512099 59512202 -64563970 + B1F SINE Alu 26 137 -12 1 1039 186 43 0 0 chr9 59512301 59512324 -64563848 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 1 1039 1126 45 0 8 chr9 59514123 59514257 -64561915 - B1_Mm SINE Alu -14 133 1 2 1039 832 96 94 14 chr9 59517082 59517220 -64558952 + B2_Mm2 SINE B2 1 149 -46 2 1039 331 151 0 19 chr9 59517251 59517305 -64558867 + B2_Mm2 SINE B2 49 101 -94 2 1039 249 33 0 0 chr9 59517332 59517362 -64558810 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2 1039 331 151 0 19 chr9 59517390 59517444 -64558728 + B2_Mm2 SINE B2 49 101 -94 2 1039 327 49 0 0 chr9 59517471 59517512 -64558660 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 2 1039 303 276 126 0 chr9 59517686 59517773 -64558399 - PB1D10 SINE Alu -9 108 11 2 1039 1202 55 7 0 chr9 59517773 59517919 -64558253 + B1_Mm SINE Alu 1 147 0 2 1039 498 221 19 37 chr9 59517966 59518074 -64558098 - B1_Mus2 SINE Alu -9 138 33 2 1039 310 283 134 54 chr9 59517991 59518103 -64558069 - MT2B LTR ERVL -332 269 149 2 1039 184 234 188 0 chr9 59518736 59518800 -64557372 - MIR3 SINE MIR -18 190 115 3 1039 317 256 116 0 chr9 59520472 59520558 -64555614 + PB1D7 SINE Alu 23 118 -2 3 1039 383 286 100 8 chr9 59522367 59522487 -64553685 + B1F SINE Alu 10 140 -9 3 1039 573 236 16 31 chr9 59523799 59523926 -64552246 + B1_Mus2 SINE Alu 1 125 -22 3 1039 280 274 33 77 chr9 59523923 59524014 -64552158 + B4 SINE B4 11 97 -195 3 1039 23 33 0 0 chr9 59524106 59524136 -64552036 + AT_rich Low_complexity Low_complexity 1 30 0 3 1039 370 250 144 63 chr9 59524155 59524266 -64551906 + B3 SINE B2 7 126 -90 3 1039 235 300 27 67 chr9 59524362 59524373 -64551799 + ID SINE ID 78 85 -139 3 1039 254 325 36 0 chr9 59524373 59524456 -64551716 + PB1D10 SINE Alu 3 88 -29 3 1039 1180 78 86 38 chr9 59524963 59525149 -64551023 - B2_Mm2 SINE B2 0 195 1 3 1039 1300 116 11 0 chr9 59525164 59525354 -64550818 - B2_Mm1t SINE B2 0 193 2 4 1039 183 42 0 0 chr9 59528421 59528445 -64547727 + (TCTCC)n Simple_repeat Simple_repeat 1 24 0 4 1039 544 281 15 152 chr9 59528696 59528893 -64547279 + ID_B1 SINE B4 24 193 -31 4 1039 201 274 155 21 chr9 59529816 59529913 -64546259 + MIRm SINE MIR 18 127 -149 4 1039 382 263 257 38 chr9 59530385 59530622 -64545550 + B4A SINE B4 1 289 -3 4 1039 567 107 0 0 chr9 59530626 59530710 -64545462 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1039 1158 75 0 0 chr9 59530876 59531014 -64545158 + B1_Mus1 SINE Alu 2 139 -9 4 1039 197 33 33 0 chr9 59531014 59531044 -64545128 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1039 233 277 169 0 chr9 59531193 59531258 -64544914 - ID2 SINE ID -6 77 2 4 1039 27 29 0 0 chr9 59531266 59531300 -64544872 + AT_rich Low_complexity Low_complexity 1 34 0 4 1039 1451 62 17 0 chr9 59531422 59531600 -64544572 - B2_Mm2 SINE B2 -14 181 1 5 1039 231 250 23 0 chr9 59531700 59531744 -64544428 - PB1D9 SINE Alu -72 48 4 5 1039 227 282 0 90 chr9 59531787 59531865 -64544307 - B4 SINE B4 -219 73 3 5 1039 237 287 277 0 chr9 59531913 59532007 -64544165 - PB1 SINE Alu -7 120 1 5 1039 612 40 0 0 chr9 59532147 59532222 -64543950 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 5 1039 1417 83 0 6 chr9 59532223 59532404 -64543768 - B2_Mm2 SINE B2 -15 180 1 5 1039 279 325 0 12 chr9 59532623 59532707 -64543465 - ID4_ SINE ID 0 83 1 5 1039 22 0 0 0 chr9 59532826 59532848 -64543324 + AT_rich Low_complexity Low_complexity 1 22 0 5 1039 246 105 0 0 chr9 59532870 59532908 -64543264 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1039 359 265 56 56 chr9 59532912 59533020 -64543152 - PB1D7 SINE Alu -12 108 1 5 1039 883 223 6 44 chr9 59533054 59533237 -64542935 + B3 SINE B2 15 190 -26 6 1039 392 296 65 37 chr9 59533329 59533543 -64542629 - L1MC5 LINE L1 -727 7234 7015 6 1039 969 115 206 6 chr9 59533543 59533718 -64542454 + B3 SINE B2 1 210 -6 6 1039 385 304 87 65 chr9 59533757 59534127 -64542045 - L1MC5 LINE L1 -930 7031 6654 6 1039 1235 145 5 5 chr9 59534280 59534481 -64541691 + URR1A DNA MER1_type 26 226 0 6 1039 405 320 0 31 chr9 59534908 59534921 -64541251 + ID_B1 SINE B4 96 219 -4 6 1039 754 165 0 0 chr9 59534921 59535036 -64541136 + B1_Mus2 SINE Alu 28 142 -5 6 1039 287 152 34 0 chr9 59535037 59535096 -64541076 + GA-rich Low_complexity Low_complexity 2 62 0 6 1039 202 229 0 0 chr9 59535097 59535145 -64541027 + T-rich Low_complexity Low_complexity 1 48 0 6 1039 269 264 0 0 chr9 59535460 59535513 -64540659 - ID4 SINE ID -26 57 5 6 1039 1487 235 91 34 chr9 59535513 59535794 -64540378 - MTD LTR MaLR -1 418 121 6 1039 1433 78 16 0 chr9 59535794 59535985 -64540187 + B2_Mm2 SINE B2 2 195 0 7 1039 1487 235 91 34 chr9 59535985 59536086 -64540086 - MTD LTR MaLR -299 120 14 6 1039 826 178 7 7 chr9 59536151 59536298 -64539874 - B1_Mur4 SINE Alu -2 148 2 7 1039 329 277 19 102 chr9 59536298 59536338 -64539834 - MT2B LTR ERVL -450 151 125 7 1039 229 330 72 121 chr9 59536303 59536510 -64539662 - B3A SINE B2 0 198 2 7 1039 1373 97 11 0 chr9 59536518 59536704 -64539468 - B2_Mm1t SINE B2 -5 188 1 7 1039 1648 21 5 0 chr9 59536713 59536899 -64539273 - B2_Mm1t SINE B2 -5 188 2 7 1039 329 146 0 0 chr9 59536925 59536980 -64539192 - L1MD2 LINE L1 -1 6358 6304 7 1039 447 68 0 0 chr9 59536985 59537044 -64539128 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1039 355 256 14 92 chr9 59537044 59537182 -64538990 - RSINE1 SINE B4 -142 150 37 7 1039 324 248 36 62 chr9 59537195 59537307 -64538865 - PB1D10 SINE Alu 0 117 9 7 1039 259 301 171 0 chr9 59537197 59537320 -64538852 - B4 SINE B4 -69 223 80 8 1039 1169 61 7 0 chr9 59537563 59537710 -64538462 + B1_Mus1 SINE Alu 1 148 0 8 1039 360 0 0 0 chr9 59537715 59537755 -64538417 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 8 1039 717 124 0 42 chr9 59537770 59537902 -64538270 + B1_Mur3 SINE Alu 32 149 0 8 1039 675 252 48 34 chr9 59537917 59538126 -64538046 - B3 SINE B2 -4 212 1 8 1039 25 65 0 0 chr9 59538181 59538227 -64537945 + AT_rich Low_complexity Low_complexity 1 46 0 8 1039 485 222 25 6 chr9 59538242 59538357 -64537815 + B1F SINE Alu 1 122 -25 8 1039 418 204 114 0 chr9 59538701 59538789 -64537383 - B1F SINE Alu -51 98 1 8 1039 208 191 48 0 chr9 59539074 59539116 -64537056 + CT-rich Low_complexity Low_complexity 3 46 0 8 1039 726 101 0 10 chr9 59539120 59539220 -64536952 - B1_Mus2 SINE Alu 0 147 49 8 1039 279 257 14 54 chr9 59539203 59539277 -64536895 - B4A SINE B4 -221 71 1 8 1039 757 144 0 39 chr9 59540387 59540517 -64535655 - B1_Mus2 SINE Alu 0 147 23 9 1039 218 211 0 0 chr9 59540529 59540567 -64535605 - B1_Mur4 SINE Alu -109 41 4 9 1039 622 260 27 54 chr9 59540821 59541081 -64535091 - L1MB7 LINE L1 -62 6122 5870 9 1039 357 225 6 13 chr9 59541103 59541179 -64534993 + B3A SINE B2 1 145 -53 9 1039 248 316 43 0 chr9 59541298 59541415 -64534757 - L1MB7 LINE L1 -399 5779 5658 9 1039 847 180 41 18 chr9 59541455 59541625 -64534547 - B3A SINE B2 -16 182 9 9 1039 860 298 80 8 chr9 59541625 59542001 -64534171 - L1MB7 LINE L1 -500 5674 5272 9 1039 229 295 0 32 chr9 59542004 59542067 -64534105 + ID_B1 SINE B4 81 141 -83 9 1039 354 207 0 60 chr9 59542012 59542095 -64534077 + PB1D9 SINE Alu 6 84 -66 9 1039 274 133 67 0 chr9 59542125 59542185 -64533987 - L1MB2 LINE L1 -18 6153 6090 9 1039 429 316 53 0 chr9 59542198 59542312 -64533860 + RSINE1 SINE B4 46 165 0 9 1039 670 204 70 23 chr9 59545335 59545506 -64530666 + ID_B1 SINE B4 23 201 -23 9 1039 255 294 128 24 chr9 59546161 59546325 -64529847 - MLT1M LTR MaLR -357 315 135 1 1039 1319 102 21 0 chr9 59546701 59546887 -64529285 + B2_Mm2 SINE B2 4 193 -2 1 1039 1180 44 0 0 chr9 59546887 59547023 -64529149 + B1_Mus2 SINE Alu 1 137 -10 1 1039 441 0 0 0 chr9 59547023 59547072 -64529100 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1039 302 312 111 12 chr9 59547613 59547785 -64528387 + L1M5 LINE L1 5612 5800 -373 1 1039 719 222 136 25 chr9 59547824 59548023 -64528149 + ID_B1 SINE B4 4 224 0 1 1039 639 203 59 0 chr9 59548234 59548352 -64527820 + B1_Mur2 SINE Alu 10 134 -15 1 1039 513 84 0 0 chr9 59548367 59548438 -64527734 + (GGGA)n Simple_repeat Simple_repeat 2 72 0 1 1039 531 289 166 50 chr9 59548532 59548811 -64527361 - B4 SINE B4 0 292 5 1 1039 288 352 46 0 chr9 59548828 59548936 -64527236 - B1F2 SINE Alu -28 121 9 1 1039 208 180 39 20 chr9 59549489 59549540 -64526632 + CT-rich Low_complexity Low_complexity 3 54 0 1 1039 979 94 54 178 chr9 59549540 59549798 -64526374 - RMER10B LTR ERVL 0 398 173 1 1039 1711 75 18 0 chr9 59549804 59550031 -64526141 + MT2C_Mm LTR ERVL 1 231 -244 1 1039 199 234 0 113 chr9 59550128 59550181 -64525991 - L2 LINE L2 -1038 2381 2335 1 1039 543 56 0 0 chr9 59550399 59550470 -64525702 + (GGGA)n Simple_repeat Simple_repeat 4 74 0 1 1039 751 245 46 46 chr9 59550681 59550878 -64525294 + B3A SINE B2 1 197 -1 1 1039 306 0 0 0 chr9 59551235 59551269 -64524903 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1039 324 0 0 0 chr9 59551269 59551304 -64524868 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1039 705 241 28 0 chr9 59551312 59551457 -64524715 - RSINE1 SINE B4 -14 151 3 1 1039 454 279 36 7 chr9 59551464 59551601 -64524571 - B1F2 SINE Alu -6 143 3 1 1039 189 0 0 0 chr9 59551608 59551629 -64524543 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 1 1039 281 314 57 0 chr9 59551668 59551738 -64524434 - RSINE1 SINE B4 0 165 92 1 1039 816 158 34 54 chr9 59551746 59551893 -64524279 + B1_Mur4 SINE Alu 6 149 -1 1 1039 338 279 48 114 chr9 59551750 59551916 -64524256 + B4A SINE B4 94 248 -44 1 1039 1041 92 73 12 chr9 59551935 59552100 -64524072 + B2_Mm2 SINE B2 1 175 -20 1 1039 450 282 52 22 chr9 59552056 59552190 -64523982 - RSINE1 SINE B4 -15 150 13 1 1039 805 55 109 0 chr9 59552341 59552451 -64523721 - B1_Mus1 SINE Alu 0 148 27 1 1039 504 228 59 0 chr9 59552545 59552646 -64523526 + RSINE1 SINE B4 42 148 -17 1 1039 851 150 0 8 chr9 59552954 59553082 -64523090 + B1_Mus2 SINE Alu 3 129 -18 1 1039 980 100 13 0 chr9 59553095 59553245 -64522927 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 1 1039 558 108 0 0 chr9 59553246 59553329 -64522843 + (GGAAA)n Simple_repeat Simple_repeat 1 83 0 1 1039 753 145 129 8 chr9 59553635 59553767 -64522405 - B1_Mur4 SINE Alu -1 149 2 1 1039 898 232 70 16 chr9 59554472 59554730 -64521442 - B4 SINE B4 -18 274 3 1 1039 308 321 7 30 chr9 59555527 59555662 -64520510 + L1M5 LINE L1 5436 5567 -557 1 1039 986 267 36 85 chr9 59555989 59556224 -64519948 + B4 SINE B4 1 225 -67 1 1039 1204 62 0 7 chr9 59556224 59556370 -64519802 - B1_Mm SINE Alu 0 147 3 1 1039 923 267 36 85 chr9 59556370 59556441 -64519731 + B4 SINE B4 226 292 0 1 1039 294 194 0 0 chr9 59556452 59556519 -64519653 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1039 315 71 0 0 chr9 59556527 59556569 -64519603 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 1 1039 204 40 0 0 chr9 59558144 59558169 -64518003 + (GGGTG)n Simple_repeat Simple_repeat 4 28 0 1 1039 312 91 0 0 chr9 59558926 59558970 -64517202 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 1 1039 730 253 5 110 chr9 59560272 59560481 -64515691 + B3 SINE B2 1 187 -29 1 1039 211 114 0 28 chr9 59560486 59560522 -64515650 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 1 1039 228 263 18 0 chr9 59560927 59560984 -64515188 + Lx8 LINE L1 7213 7270 -203 1 1039 965 101 60 7 chr9 59561025 59561174 -64514998 + B2_Mm2 SINE B2 2 158 -37 1 1039 243 88 0 0 chr9 59561175 59561209 -64514963 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 1039 243 219 0 173 chr9 59561230 59561357 -64514815 + Lx8 LINE L1 7356 7460 -13 1 1039 482 192 93 0 chr9 59563132 59563256 -64512916 + B1F SINE Alu 8 149 0 1 1039 272 250 147 0 chr9 59563285 59563353 -64512819 + ID4 SINE ID 4 81 -2 1 1039 811 278 5 0 chr9 59563300 59563494 -64512678 + ID_B1 SINE B4 30 224 0 1 1039 565 212 169 73 chr9 59563496 59563674 -64512498 + B3A SINE B2 1 195 0 1 1039 207 0 0 0 chr9 59566704 59566727 -64509445 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1039 262 233 0 0 chr9 59566729 59566772 -64509400 - B4 SINE B4 -29 263 221 1 1039 486 0 0 0 chr9 59566778 59566832 -64509340 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1039 1836 139 154 11 chr9 59566832 59567189 -64508983 - RMER1B Other Other -19 1047 640 1 1039 516 270 98 26 chr9 59567190 59567384 -64508788 - B4 SINE B4 -84 208 1 1 1039 485 252 141 6 chr9 59567411 59567567 -64508605 - B3 SINE B2 -5 211 35 1 1039 682 265 97 5 chr9 59567626 59567832 -64508340 + B4A SINE B4 9 234 -58 1 1039 810 210 6 6 chr9 59567832 59567995 -64508177 + B3A SINE B2 3 165 -33 1 1039 291 233 0 0 chr9 59568021 59568124 -64508048 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 1039 1321 111 30 8 chr9 59568371 59568608 -64507564 + RMER12 LTR ERVK 530 771 -551 1 1039 23 33 0 0 chr9 59568616 59568646 -64507526 + AT_rich Low_complexity Low_complexity 1 30 0 1 1039 849 150 0 0 chr9 59568701 59568841 -64507331 + B1_Mur4 SINE Alu 10 149 -1 1 1039 2496 165 153 24 chr9 59568888 59569429 -64506743 - RMER19C LTR ERVK 0 611 1 1 1039 339 130 0 0 chr9 59569695 59569749 -64506423 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 1 1039 1573 162 176 18 chr9 59569825 59570165 -64506007 - ORR1B1 LTR MaLR 0 394 1 1 1039 1089 109 0 0 chr9 59570564 59570711 -64505461 + B1_Mus1 SINE Alu 1 147 -1 1 1039 867 97 0 0 chr9 59570711 59570856 -64505316 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 1 1039 618 332 43 19 chr9 59572876 59573085 -64503087 - MER20 DNA MER1_type -4 215 2 1 1039 351 0 0 0 chr9 59573143 59573182 -64502990 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1039 267 236 0 65 chr9 59573182 59573259 -64502913 - ID4_ SINE ID -10 73 2 1 1039 304 219 152 0 chr9 59573698 59573803 -64502369 + RSINE1 SINE B4 2 122 -43 1 1039 254 320 62 0 chr9 59573849 59573946 -64502226 - L2 LINE L2 -959 2460 2358 1 1039 407 193 0 35 chr9 59573964 59574050 -64502122 - PB1D9 SINE Alu -5 115 33 1 1039 629 206 27 47 chr9 59574067 59574215 -64501957 - B1F SINE Alu 0 149 5 1 1039 932 146 35 0 chr9 59574494 59574638 -64501534 + B1_Mur4 SINE Alu 2 150 0 1 1039 374 220 0 31 chr9 59574659 59574781 -64501391 - B1F SINE Alu -21 128 15 1 1039 201 39 0 0 chr9 59574822 59574848 -64501324 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1039 402 274 0 0 chr9 59574929 59575108 -64501064 + C-rich Low_complexity Low_complexity 2 180 0 1 1039 432 266 0 0 chr9 59575125 59575294 -64500878 + C-rich Low_complexity Low_complexity 1 169 0 1 1039 447 289 18 0 chr9 59575323 59575437 -64500735 - PB1D10 SINE Alu -1 116 1 1 1039 388 276 20 10 chr9 59575636 59575735 -64500437 - RMER30 DNA MER1_type -2 200 101 1 1039 441 224 41 0 chr9 59575932 59576030 -64500142 - RMER30 DNA MER1_type -100 102 1 1 1039 832 229 104 0 chr9 59576379 59576571 -64499601 - B3 SINE B2 -4 212 1 1 1039 366 141 28 0 chr9 59576598 59576669 -64499503 - B1_Mus2 SINE Alu 0 147 75 1 1039 479 216 25 41 chr9 59576829 59576950 -64499222 + ID_B1 SINE B4 86 204 -20 1 1039 296 265 32 49 chr9 59576840 59576963 -64499209 + B1_Mus1 SINE Alu 17 137 -11 1 1039 846 29 0 0 chr9 59576968 59577073 -64499099 + (TC)n Simple_repeat Simple_repeat 1 105 0 1 1039 1128 42 20 27 chr9 59577160 59577308 -64498864 + B1_Mus1 SINE Alu 2 148 0 1 1039 351 65 0 0 chr9 59577308 59577354 -64498818 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1039 865 234 21 0 chr9 59577432 59577624 -64498548 + B3A SINE B2 1 196 -2 1 1039 463 258 84 23 chr9 59577875 59578006 -64498166 + B1F2 SINE Alu 10 148 -1 1 1039 267 304 39 19 chr9 59578179 59578283 -64497889 - PB1D10 SINE Alu -10 107 2 1 1039 585 269 30 8 chr9 59578461 59578592 -64497580 - RSINE1 SINE B4 -29 136 3 1 1039 756 41 0 0 chr9 59578725 59578823 -64497349 + B1_Mm SINE Alu 38 135 -12 1 1039 926 93 7 0 chr9 59578823 59578962 -64497210 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 1 1039 244 204 0 75 chr9 59579512 59579565 -64496607 - BC1_Mm scRNA scRNA -94 58 10 1 1039 1149 75 0 0 chr9 59579652 59579799 -64496373 + B1_Mus1 SINE Alu 2 148 0 1 1039 463 282 34 47 chr9 59580006 59580155 -64496017 - B1F2 SINE Alu 0 149 3 1 1039 202 111 74 0 chr9 59580187 59580241 -64495931 + (CAGAGA)n Simple_repeat Simple_repeat 1 58 0 1 1039 261 184 132 0 chr9 59580256 59580332 -64495840 - L2 LINE L2 -774 2645 2560 1 1039 198 280 35 64 chr9 59580343 59580484 -64495688 - L2 LINE L2 -924 2495 2359 1 1039 877 241 34 19 chr9 59581330 59581537 -64494635 - B3 SINE B2 -4 212 3 1 1039 465 214 137 0 chr9 59582137 59582254 -64493918 + ID_B1 SINE B4 82 214 -10 1 1039 248 123 32 81 chr9 59582393 59582455 -64493717 + B1_Mur4 SINE Alu 90 148 -2 1 1039 180 77 0 0 chr9 59582455 59582481 -64493691 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1039 30 45 0 0 chr9 59582701 59582745 -64493427 + AT_rich Low_complexity Low_complexity 1 44 0 2 1039 363 312 82 41 chr9 59582915 59583062 -64493110 - RSINE1 SINE B4 -4 161 9 2 1039 1058 122 7 0 chr9 59585826 59585973 -64490199 + B1_Mus1 SINE Alu 1 148 0 2 1039 200 217 0 0 chr9 59585974 59586020 -64490152 + A-rich Low_complexity Low_complexity 1 46 0 2 1039 684 208 15 0 chr9 59586188 59586318 -64489854 + ID_B1 SINE B4 85 216 -8 2 1039 488 370 18 6 chr9 59586809 59586972 -64489200 - RSINE1 SINE B4 0 165 1 2 1039 608 229 38 0 chr9 59587076 59587207 -64488965 - B1_Mur1 SINE Alu -1 148 13 2 1039 709 223 7 7 chr9 59587723 59587872 -64488300 + B1_Mur4 SINE Alu 1 149 -1 2 1039 1290 84 39 0 chr9 59588113 59588291 -64487881 + B2_Mm2 SINE B2 3 187 -8 2 1039 402 252 9 45 chr9 59588293 59588405 -64487767 - B1F2 SINE Alu -8 141 34 2 1039 501 208 120 0 chr9 59588756 59588881 -64487291 - B1F SINE Alu -1 148 9 2 1039 1403 94 113 0 chr9 59589170 59589373 -64486799 + URR1A DNA MER1_type 1 226 0 2 1039 214 158 0 0 chr9 59589535 59589573 -64486599 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1039 209 339 110 24 chr9 59589701 59589828 -64486344 + MIRc SINE MIR 20 157 -111 2 1039 1188 74 0 0 chr9 59589849 59589997 -64486175 - B1_Mus1 SINE Alu 0 148 1 2 1039 1218 82 43 11 chr9 59590190 59590347 -64485825 + B2_Mm1a SINE B2 1 160 -33 2 1039 303 28 0 0 chr9 59590347 59590383 -64485789 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 2 1039 1218 82 43 11 chr9 59590383 59590411 -64485761 + B2_Mm1a SINE B2 161 192 -1 2 1039 937 114 50 0 chr9 59590419 59590559 -64485613 + B1_Mus2 SINE Alu 1 147 0 2 1039 588 181 25 17 chr9 59590841 59590959 -64485213 - PB1D9 SINE Alu 0 120 2 2 1039 23 33 0 0 chr9 59590971 59591001 -64485171 + AT_rich Low_complexity Low_complexity 1 30 0 2 1039 473 288 114 20 chr9 59591001 59591150 -64485022 - RSINE1 SINE B4 -1 164 2 2 1039 229 217 33 0 chr9 59591505 59591565 -64484607 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1039 966 268 48 0 chr9 59591571 59591843 -64484329 - B4A SINE B4 -6 286 2 2 1039 383 263 42 0 chr9 59591939 59592034 -64484138 + PB1D10 SINE Alu 2 100 -49 2 1039 1644 180 43 46 chr9 59592121 59592493 -64483679 - ORR1D1 LTR MaLR -3 371 1 2 1039 1040 205 29 5 chr9 59592844 59593050 -64483122 + B3 SINE B2 2 212 -4 2 1039 243 360 0 29 chr9 59593164 59593267 -64482905 + L1MC LINE L1 5555 5654 -2228 2 1039 226 329 14 0 chr9 59593393 59593463 -64482709 + ID4 SINE ID 3 73 -10 2 1039 422 227 11 0 chr9 59594323 59594411 -64481761 - 5S rRNA rRNA -31 90 2 2 1039 1239 48 0 0 chr9 59594429 59594575 -64481597 + B1_Mus2 SINE Alu 2 147 0 2 1039 399 41 0 0 chr9 59594575 59594624 -64481548 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1039 261 0 0 0 chr9 59594863 59594892 -64481280 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1039 251 288 0 0 chr9 59594898 59594964 -64481208 - PB1D7 SINE Alu -31 89 24 2 1039 551 248 24 0 chr9 59595046 59595171 -64481001 - B1_Mur2 SINE Alu -16 133 6 2 1039 384 40 0 0 chr9 59595369 59595419 -64480753 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1039 954 240 159 17 chr9 59595600 59596020 -64480152 + Charlie4a DNA MER1_type 24 503 -5 2 1039 1211 41 0 0 chr9 59596021 59596167 -64480005 + B1_Mm SINE Alu 2 147 0 2 1039 288 214 0 0 chr9 59597494 59597550 -64478622 - B1_Mur1 SINE Alu -6 143 88 2 1039 252 0 0 0 chr9 59597563 59597591 -64478581 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1039 21 0 0 0 chr9 59598729 59598750 -64477422 + GC_rich Low_complexity Low_complexity 1 21 0 2 1039 1335 98 38 0 chr9 59601361 59601545 -64474627 + B2_Mm2 SINE B2 2 192 -3 2 1039 628 251 15 30 chr9 59601774 59601975 -64474197 - B3A SINE B2 0 198 1 2 1039 736 316 43 5 chr9 59601986 59602193 -64473979 - ID_B1 SINE B4 -7 217 3 2 1039 30 21 0 21 chr9 59602657 59602673 -64473499 + AT_rich Low_complexity Low_complexity 1 16 0 2 1039 1159 68 0 20 chr9 59602673 59602822 -64473350 + B1_Mus2 SINE Alu 2 147 0 2 1039 30 21 0 21 chr9 59602822 59602853 -64473319 + AT_rich Low_complexity Low_complexity 1 31 0 2 1039 183 100 0 0 chr9 59602989 59603019 -64473153 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1039 221 320 67 0 chr9 59603757 59603832 -64472340 - ID4 SINE ID -1 82 3 2 1039 264 122 0 0 chr9 59604276 59604317 -64471855 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1039 1200 48 7 0 chr9 59604322 59604467 -64471705 - B1_Mus2 SINE Alu 0 147 2 2 1039 628 189 0 0 chr9 59604547 59604669 -64471503 - B1_Mur3 SINE Alu -1 148 27 2 1039 1700 26 0 0 chr9 59604783 59604975 -64471197 - B2_Mm1a SINE B2 0 193 2 2 1039 569 223 23 8 chr9 59605274 59605405 -64470767 - RSINE1 SINE B4 0 165 33 2 1039 339 44 0 0 chr9 59605430 59605475 -64470697 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2 1039 263 311 27 0 chr9 59605491 59605565 -64470607 - B1F SINE Alu -52 97 22 2 1039 322 287 72 14 chr9 59605734 59605872 -64470300 - L1ME3A LINE L1 -27 6146 6001 2 1039 670 174 16 0 chr9 59605970 59606091 -64470081 - B1_Mus1 SINE Alu -1 147 25 2 1039 325 242 0 0 chr9 59606116 59606178 -64469994 - B1F2 SINE Alu -87 62 1 2 1039 227 64 82 41 chr9 59606799 59606848 -64469324 - B1_Mus2 SINE Alu 0 147 97 2 1039 826 181 7 13 chr9 59607063 59607214 -64468958 - B1_Mur4 SINE Alu 0 150 1 2 1039 343 205 87 27 chr9 59607493 59607604 -64468568 + B1_Mus1 SINE Alu 2 131 -18 2 1039 198 0 0 0 chr9 59607828 59607850 -64468322 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1039 1034 52 75 0 chr9 59608038 59608172 -64468000 + B1_Mm SINE Alu 3 146 -1 2 1039 233 102 68 0 chr9 59608340 59608399 -64467773 + CT-rich Low_complexity Low_complexity 2 64 0 2 1039 646 189 77 23 chr9 59608418 59608548 -64467624 - B1_Mur4 SINE Alu -13 137 1 2 1039 462 264 77 21 chr9 59608607 59608750 -64467422 - RSINE1 SINE B4 -12 153 3 2 1039 548 267 66 6 chr9 59609277 59609443 -64466729 - RMER30 DNA MER1_type -22 180 5 2 1039 625 157 0 0 chr9 59610030 59610138 -64466034 - B1_Mur4 SINE Alu 0 150 43 2 1039 525 209 102 22 chr9 59610490 59610627 -64465545 + B1_Mur4 SINE Alu 1 148 -2 2 1039 337 356 39 52 chr9 59610640 59610794 -64465378 + B4 SINE B4 67 218 -74 2 1039 1430 77 0 39 chr9 59610796 59610999 -64465173 - B2_Mm2 SINE B2 0 195 1 2 1039 404 0 0 38 chr9 59611002 59611055 -64465117 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 2 1039 659 161 107 0 chr9 59611055 59611167 -64465005 - B1_Mur2 SINE Alu -10 139 16 2 1039 1224 250 30 13 chr9 59611389 59611693 -64464479 - Lx7 LINE L1 -329 7367 7059 2 1039 619 176 9 0 chr9 59611726 59611834 -64464338 + B1_Mus1 SINE Alu 1 109 -39 2 1039 243 301 135 62 chr9 59612414 59612800 -64463372 - L1MEg LINE L1 -403 6010 5597 2 1039 195 146 0 0 chr9 59612830 59612871 -64463301 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 2 1039 420 287 52 0 chr9 59612873 59613002 -64463170 - B1F SINE Alu 0 149 14 2 1039 382 265 36 90 chr9 59613008 59613174 -64462998 - L1MEg LINE L1 -778 5541 5385 2 1039 331 250 23 0 chr9 59613178 59613266 -64462906 - ID_B1 SINE B4 -21 203 114 2 1039 240 212 62 124 chr9 59613296 59613393 -64462779 - B4A SINE B4 -200 92 2 2 1039 664 162 0 0 chr9 59613550 59613661 -64462511 + B1_Mur2 SINE Alu 4 114 -35 2 1039 504 246 85 0 chr9 59613662 59613780 -64462392 - B3A SINE B2 -24 174 47 2 1039 316 288 168 53 chr9 59613874 59614083 -64462089 - L1MC LINE L1 -1255 4891 4659 2 1039 553 263 60 8 chr9 59614092 59614226 -64461946 - ID_B1 SINE B4 -2 222 82 2 1039 201 74 0 0 chr9 59614232 59614259 -64461913 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2 1039 348 24 0 0 chr9 59615112 59615153 -64461019 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1039 1192 61 0 0 chr9 59615153 59615301 -64460871 - B1_Mus1 SINE Alu 0 148 1 2 1039 232 185 0 18 chr9 59615309 59615364 -64460808 - L1MC LINE L1 -1486 4660 4607 2 1039 233 311 24 46 chr9 59615366 59615461 -64460711 - ID4_ SINE ID -57 95 2 2 1039 22 0 0 0 chr9 59615461 59615483 -64460689 + AT_rich Low_complexity Low_complexity 1 22 0 2 1039 219 292 121 15 chr9 59615524 59615590 -64460582 - PB1D10 SINE Alu -22 95 23 2 1039 474 272 116 75 chr9 59615641 59615834 -64460338 - L1MEg LINE L1 -1545 4774 4571 2 1039 1144 48 7 7 chr9 59615834 59615981 -64460191 - B1_Mm SINE Alu 0 147 1 2 1039 474 272 116 75 chr9 59615981 59616280 -64459892 - L1MEg LINE L1 -1749 4570 4262 2 1039 368 309 30 69 chr9 59616280 59616482 -64459690 - L1MEg LINE L1 -4535 1865 1672 2 1039 1192 137 11 5 chr9 59616483 59616674 -64459498 - B2_Mm1t SINE B2 0 193 2 2 1039 487 179 20 50 chr9 59616686 59616786 -64459386 + PB1D9 SINE Alu 24 120 0 2 1039 410 236 94 15 chr9 59616811 59616986 -64459186 - L1MEg LINE L1 -4692 1723 1516 2 1039 756 260 14 14 chr9 59616986 59617193 -64458979 - B3 SINE B2 -7 209 3 2 1039 231 276 110 73 chr9 59617193 59617318 -64458854 - L1MEg LINE L1 -4900 1515 1379 2 1039 183 80 0 0 chr9 59617421 59617446 -64458726 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1039 282 141 164 45 chr9 59617600 59617667 -64458505 - B1_Mur2 SINE Alu -5 144 70 2 1039 1167 48 7 0 chr9 59618176 59618322 -64457850 - B1_Mus2 SINE Alu 0 147 1 2 1039 446 241 0 0 chr9 59618365 59618452 -64457720 - 5S rRNA rRNA -33 88 2 2 1039 40 0 0 0 chr9 59618943 59618983 -64457189 + AT_rich Low_complexity Low_complexity 1 40 0 2 1039 1015 102 7 7 chr9 59618983 59619131 -64457041 - B1_Mus1 SINE Alu 0 148 1 2 1039 391 258 53 11 chr9 59619353 59619447 -64456725 + MER58B DNA MER1_type 219 316 -25 3 1039 453 19 0 0 chr9 59619447 59619501 -64456671 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1039 328 217 14 14 chr9 59620457 59620527 -64455645 - B4A SINE B4 -16 276 207 3 1039 936 112 28 14 chr9 59620568 59620713 -64455459 + B1_Mus1 SINE Alu 1 147 -1 3 1039 748 217 49 98 chr9 59620729 59620954 -64455218 - B3 SINE B2 -2 214 1 3 1039 574 306 114 24 chr9 59620954 59621165 -64455007 - B4A SINE B4 -62 230 1 3 1039 234 304 16 94 chr9 59621196 59621234 -64454938 - YREP_Mm Unknown Unknown -1462 350 312 3 1039 455 243 156 61 chr9 59621234 59621414 -64454758 - B3 SINE B2 -19 197 1 3 1039 234 304 16 94 chr9 59621414 59621502 -64454670 - YREP_Mm Unknown Unknown -1501 311 235 3 1039 457 244 143 0 chr9 59621429 59621548 -64454624 + ID_B1 SINE B4 88 223 -1 3 1039 369 43 0 0 chr9 59621606 59621653 -64454519 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1039 248 375 92 24 chr9 59621800 59622013 -64454159 + L2a LINE L2 2900 3127 -299 3 1039 409 290 60 80 chr9 59622081 59622280 -64453892 + MER58C DNA MER1_type 5 199 -16 3 1039 825 124 0 0 chr9 59622390 59622519 -64453653 + (TA)n Simple_repeat Simple_repeat 1 129 0 3 1039 1193 61 0 0 chr9 59622570 59622718 -64453454 + B1_Mus1 SINE Alu 1 148 0 3 1039 192 40 0 0 chr9 59623203 59623228 -64452944 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1039 1139 82 0 0 chr9 59623250 59623397 -64452775 - B1_Mus2 SINE Alu 0 147 1 3 1039 26 30 0 0 chr9 59624570 59624603 -64451569 + AT_rich Low_complexity Low_complexity 1 33 0 3 1039 228 396 84 18 chr9 59624935 59625161 -64451011 - B4A SINE B4 -42 250 10 3 1039 256 191 45 117 chr9 59625262 59625416 -64450756 - L1_Mur1 LINE L1 -1517 4369 4227 3 1039 272 242 106 61 chr9 59625492 59625624 -64450548 - B4A SINE B4 0 292 155 3 1039 586 279 12 24 chr9 59625970 59626135 -64450037 - RSINE1 SINE B4 0 165 3 3 1039 318 195 111 33 chr9 59626252 59626342 -64449830 - MT2_Mm LTR ERVL -196 297 201 3 1039 5604 83 96 14 chr9 59626407 59627237 -64448935 - L1_Mus3 LINE L1 -2 6636 5739 3 1039 713 221 0 49 chr9 59628311 59628454 -64447718 - B1_Mur2 SINE Alu -13 136 1 3 1039 297 342 91 20 chr9 59628783 59629135 -64447037 - L1M4 LINE L1 -5486 1056 680 3 1039 684 244 103 10 chr9 59629240 59629435 -64446737 - B3 SINE B2 -2 214 2 3 1039 283 53 0 35 chr9 59629448 59629506 -64446666 - B2_Mm2 SINE B2 -3 192 137 3 1039 227 278 56 0 chr9 59629489 59629561 -64446611 - B3 SINE B2 -95 121 46 3 1039 1310 69 34 0 chr9 59629582 59629757 -64446415 - B2_Mm2 SINE B2 -13 182 2 3 1039 320 264 51 107 chr9 59629807 59629985 -64446187 - L1M4 LINE L1 -6026 516 349 3 1039 216 0 0 0 chr9 59630790 59630814 -64445358 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 3 1039 888 114 23 0 chr9 59630815 59630946 -64445226 - B1_Mur3 SINE Alu -2 147 14 3 1039 214 217 22 0 chr9 59630979 59631025 -64445147 + (TATATG)n Simple_repeat Simple_repeat 6 52 0 3 1039 351 292 134 35 chr9 59631087 59631229 -64444943 - B4A SINE B4 -56 236 81 3 1039 31 26 0 0 chr9 59631236 59631274 -64444898 + AT_rich Low_complexity Low_complexity 1 38 0 3 1039 234 237 17 17 chr9 59631402 59631462 -64444710 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 3 1039 961 223 21 16 chr9 59631473 59631660 -64444512 - B3 SINE B2 -28 188 1 3 1039 1015 267 77 33 chr9 59632058 59632487 -64443685 - L1MC2 LINE L1 -6 6338 5891 3 1039 23 0 0 0 chr9 59634104 59634127 -64442045 + AT_rich Low_complexity Low_complexity 1 23 0 3 1039 1278 77 55 0 chr9 59634210 59634369 -64441803 + B2_Mm1a SINE B2 2 160 -33 3 1039 315 0 0 0 chr9 59634369 59634404 -64441768 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 1039 1278 77 55 0 chr9 59634404 59634426 -64441746 + B2_Mm1a SINE B2 161 192 -1 3 1039 35 63 0 0 chr9 59634534 59634597 -64441575 + AT_rich Low_complexity Low_complexity 1 63 0 3 1039 1510 59 5 14 chr9 59634822 59635029 -64441143 - MTB LTR MaLR 0 400 196 3 1039 1043 58 65 0 chr9 59635035 59635174 -64440998 - B1_Mus1 SINE Alu 0 148 1 3 1039 5093 164 19 34 chr9 59635174 59636152 -64440020 - MYSERV16_I-int LTR ERVK -1011 1315 352 3 1039 525 224 93 43 chr9 59636789 59636929 -64439243 + B1F SINE Alu 3 149 0 3 1040 497 309 8 23 chr9 59638323 59638452 -64437720 + B3A SINE B2 3 129 -69 3 1040 513 195 21 105 chr9 59638450 59638593 -64437579 + B3A SINE B2 67 197 -1 3 1040 464 303 195 34 chr9 59638625 59638861 -64437311 + B4A SINE B4 1 274 -18 3 1040 196 30 61 0 chr9 59638927 59638960 -64437212 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1040 263 125 0 48 chr9 59639009 59639051 -64437121 + PB1D9 SINE Alu 20 59 -61 3 1040 357 233 11 84 chr9 59639055 59639233 -64436939 + G-rich Low_complexity Low_complexity 6 170 0 3 1040 493 202 0 39 chr9 59639237 59639340 -64436832 + B1_Mus2 SINE Alu 40 138 -9 3 1040 702 176 261 36 chr9 59639435 59639600 -64436572 + B3 SINE B2 1 202 -14 3 1040 1219 54 0 0 chr9 59639642 59639789 -64436383 + B1_Mus1 SINE Alu 2 148 0 3 1040 456 335 71 53 chr9 59639804 59639829 -64436343 + B3A SINE B2 8 25 -173 3 1040 1586 42 0 15 chr9 59639829 59640024 -64436148 - B2_Mm1t SINE B2 0 193 2 3 1040 456 294 91 60 chr9 59640024 59640197 -64435975 + B3A SINE B2 26 212 -4 3 1040 1331 92 11 5 chr9 59640198 59640383 -64435789 - B2_Mm2 SINE B2 -9 186 1 3 1040 318 87 0 0 chr9 59640523 59640569 -64435603 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 3 1040 27 62 0 0 chr9 59640876 59640924 -64435248 + AT_rich Low_complexity Low_complexity 1 48 0 3 1040 209 322 0 0 chr9 59641112 59641171 -64435001 + MIRb SINE MIR 63 121 -147 3 1040 461 242 99 8 chr9 59641318 59641439 -64434733 + B1F SINE Alu 18 149 0 3 1040 464 324 131 50 chr9 59641730 59641990 -64434182 - B4 SINE B4 -9 283 3 3 1040 186 103 0 0 chr9 59642147 59642176 -64433996 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1040 1150 120 38 11 chr9 59642250 59642436 -64433736 + B2_Mm2 SINE B2 1 191 -4 3 1040 393 202 107 0 chr9 59642478 59642562 -64433610 - PB1D9 SINE Alu -27 93 1 3 1040 271 263 88 124 chr9 59642562 59642602 -64433570 - B4 SINE B4 -199 93 58 3 1040 791 274 95 111 chr9 59643377 59643755 -64432417 + MTE2a LTR MaLR 1 372 -7 3 1040 1302 113 40 5 chr9 59644290 59644512 -64431660 + Lx3_Mus LINE L1 6772 7001 -8 3 1040 390 330 19 0 chr9 59644553 59644656 -64431516 + PB1D7 SINE Alu 3 107 -13 3 1040 23 33 0 0 chr9 59644656 59644686 -64431486 + AT_rich Low_complexity Low_complexity 1 30 0 3 1040 234 284 0 0 chr9 59644773 59644868 -64431304 + A-rich Low_complexity Low_complexity 1 95 0 3 1040 3859 269 55 61 chr9 59644891 59645397 -64430775 - Lx7 LINE L1 -396 7300 6750 3 1040 984 161 4 167 chr9 59645397 59645666 -64430506 - URR1B DNA MER1_type 0 225 1 3 1040 3859 269 55 61 chr9 59645666 59645677 -64430495 - Lx7 LINE L1 -947 6749 6742 3 1040 609 14 0 0 chr9 59645677 59645747 -64430425 + (TAG)n Simple_repeat Simple_repeat 1 70 0 3 1040 3859 269 55 61 chr9 59645747 59646070 -64430102 - Lx7 LINE L1 -955 6741 6432 3 1040 1223 41 0 0 chr9 59646070 59646217 -64429955 - B1_Mus2 SINE Alu 0 147 1 3 1040 3859 269 55 61 chr9 59646217 59646483 -64429689 - Lx7 LINE L1 -1265 6431 6196 3 1040 1255 27 0 0 chr9 59646483 59646629 -64429543 - B1_Mm SINE Alu -1 146 1 3 1040 3859 269 55 61 chr9 59646629 59646950 -64429222 - Lx7 LINE L1 -1501 6195 5879 3 1040 514 168 26 0 chr9 59647690 59647803 -64428369 + Lx2A LINE L1 6893 7008 0 3 1040 442 300 0 0 chr9 59647959 59648069 -64428103 - PB1D10 SINE Alu -3 114 5 3 1040 633 311 58 42 chr9 59648108 59648299 -64427873 - B3A SINE B2 -3 195 2 3 1040 271 347 11 0 chr9 59648351 59648446 -64427726 - ID_B1 SINE B4 -37 187 92 3 1040 45 19 0 0 chr9 59648466 59648518 -64427654 + AT_rich Low_complexity Low_complexity 1 52 0 3 1040 430 319 6 42 chr9 59648544 59648711 -64427461 - RSINE1 SINE B4 0 165 5 3 1040 32 0 0 0 chr9 59648717 59648749 -64427423 + AT_rich Low_complexity Low_complexity 1 32 0 3 1040 654 270 48 29 chr9 59648925 59649135 -64427037 - B3 SINE B2 -1 215 2 3 1040 21 57 0 0 chr9 59649268 59649303 -64426869 + AT_rich Low_complexity Low_complexity 1 35 0 3 1040 2411 258 93 14 chr9 59649964 59650672 -64425500 - Lx8 LINE L1 -107 7366 6603 3 1040 1493 53 0 31 chr9 59650729 59650923 -64425249 + B2_Mm1a SINE B2 3 190 -3 3 1040 242 328 81 8 chr9 59650963 59651086 -64425086 - Charlie4z DNA MER1_type -34 133 2 3 1040 275 260 13 40 chr9 59651382 59651458 -64424714 + B4A SINE B4 2 75 -217 3 1040 1246 282 164 15 chr9 59652371 59653097 -64423075 - L1MC3 LINE L1 -1103 6682 5849 3 1040 818 157 0 18 chr9 59653120 59653272 -64422900 + B1_Mur2 SINE Alu 2 148 -1 3 1040 304 284 31 21 chr9 59653281 59653378 -64422794 - L1MC3 LINE L1 -1961 5824 5727 3 1040 2576 82 98 18 chr9 59653414 59653812 -64422360 - Lx3_Mus LINE L1 0 7009 6580 3 1040 418 200 20 84 chr9 59653820 59654022 -64422150 - RMER17C LTR ERVK -136 274 86 3 1040 7046 68 24 16 chr9 59654022 59655611 -64420561 - Lx3_Mus LINE L1 -422 6587 4977 3 1040 579 285 28 109 chr9 59655611 59655859 -64420313 + B4A SINE B4 14 241 -51 3 1040 739 181 43 7 chr9 59655852 59655991 -64420181 + B1_Mur1 SINE Alu 6 149 0 3 1040 23 0 0 0 chr9 59656047 59656070 -64420102 + AT_rich Low_complexity Low_complexity 1 23 0 3 1040 23 0 0 0 chr9 59656202 59656225 -64419947 + AT_rich Low_complexity Low_complexity 1 23 0 3 1040 703 279 61 5 chr9 59656313 59656511 -64419661 - B3 SINE B2 -7 209 1 3 1040 276 242 250 11 chr9 59656538 59656630 -64419542 + PB1D10 SINE Alu 1 114 -3 3 1040 21 36 0 0 chr9 59656687 59656715 -64419457 + AT_rich Low_complexity Low_complexity 1 28 0 3 1040 381 22 0 0 chr9 59656819 59656865 -64419307 + (CATA)n Simple_repeat Simple_repeat 3 48 0 4 1040 2040 198 194 4 chr9 59657482 59657900 -64418272 - Lx7 LINE L1 -176 7284 6766 4 1040 255 31 0 0 chr9 59657900 59657932 -64418240 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1040 2040 219 189 7 chr9 59657932 59658244 -64417928 - Lx7 LINE L1 -816 6828 6481 4 1040 673 232 181 0 chr9 59658258 59658435 -64417737 - B3 SINE B2 -7 209 1 4 1040 265 312 0 0 chr9 59658472 59658536 -64417636 - ID4_ SINE ID -19 64 1 4 1040 240 312 90 42 chr9 59658860 59659004 -64417168 - MTEa LTR MaLR -162 197 47 4 1040 261 348 0 80 chr9 59659031 59659131 -64417041 - MTEa LTR MaLR -287 92 1 4 1040 1066 112 35 51 chr9 59659443 59659640 -64416532 - B2_Mm2 SINE B2 -1 194 1 4 1040 726 168 0 49 chr9 59660163 59660307 -64415865 + B1_Mus2 SINE Alu 1 137 -10 4 1040 324 0 0 0 chr9 59660307 59660343 -64415829 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1040 632 228 20 14 chr9 59660762 59660909 -64415263 - B1_Mur2 SINE Alu 0 149 2 4 1040 1089 165 5 15 chr9 59661173 59661370 -64414802 - B2_Mm2 SINE B2 0 195 1 4 1040 602 212 25 0 chr9 59661765 59661883 -64414289 - RSINE1 SINE B4 -35 130 10 4 1040 207 200 0 0 chr9 59662557 59662602 -64413570 + A-rich Low_complexity Low_complexity 1 45 0 4 1040 647 282 22 22 chr9 59662696 59662877 -64413295 - B3A SINE B2 -17 181 1 4 1040 557 242 271 6 chr9 59663570 59663736 -64412436 + B3 SINE B2 1 210 -6 4 1040 22 0 0 0 chr9 59664069 59664091 -64412081 + AT_rich Low_complexity Low_complexity 1 22 0 4 1040 25 0 0 0 chr9 59664123 59664148 -64412024 + AT_rich Low_complexity Low_complexity 1 25 0 4 1040 252 86 0 0 chr9 59664148 59664183 -64411989 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1040 516 280 25 80 chr9 59664194 59664357 -64411815 - RSINE1 SINE B4 0 165 12 4 1040 1284 92 0 6 chr9 59664971 59665337 -64410835 + (TTTC)n Simple_repeat Simple_repeat 1 363 0 4 1040 1574 214 25 8 chr9 59665670 59666032 -64410140 + MYSERV-int LTR ERVK 6175 6542 -8 4 1040 1859 194 121 21 chr9 59666035 59666515 -64409657 + RLTR11A LTR ERVK 1 528 0 4 1040 333 0 0 0 chr9 59667028 59667065 -64409107 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1040 260 192 96 0 chr9 59667392 59667465 -64408707 + L1MEg LINE L1 1904 1983 -4259 4 1040 226 300 0 0 chr9 59667902 59667982 -64408190 + L1MEg LINE L1 2438 2517 -3629 4 1040 834 181 7 32 chr9 59668246 59668400 -64407772 + B1_Mur4 SINE Alu 1 150 0 4 1040 1078 75 0 7 chr9 59668575 59668722 -64407450 + B1_Mus2 SINE Alu 2 147 0 4 1040 753 310 88 16 chr9 59668854 59669325 -64406847 + L1_Mur3 LINE L1 4314 4823 -1063 4 1040 373 326 21 28 chr9 59669571 59669716 -64406456 - B1_Mur3 SINE Alu -5 144 1 4 1040 276 245 0 0 chr9 59670029 59670082 -64406090 - B1F2 SINE Alu -82 67 15 4 1040 459 274 0 0 chr9 59670094 59670196 -64405976 - Lx8 LINE L1 -132 7341 7240 4 1040 326 244 48 2 chr9 59670245 59670344 -64405828 - PB1D10 SINE Alu -2 125 17 4 1040 467 336 44 0 chr9 59670405 59670542 -64405630 - RSINE1 SINE B4 -11 154 12 4 1040 451 44 31 52 chr9 59670583 59670679 -64405493 + Lx3_Mus LINE L1 6911 7004 -5 4 1040 647 338 125 10 chr9 59671111 59671422 -64404750 - MTE-int LTR MaLR -1110 470 124 4 1040 640 195 76 0 chr9 59671731 59671849 -64404323 + B1_Mur1 SINE Alu 5 131 -18 4 1040 251 208 104 0 chr9 59672203 59672280 -64403892 - Lx8 LINE L1 0 7473 7389 4 1040 447 263 90 8 chr9 59672758 59672892 -64403280 - ID_B1 SINE B4 0 224 80 4 1040 855 81 0 16 chr9 59673745 59673871 -64402301 - B1_Mus1 SINE Alu 0 148 25 4 1040 1353 237 82 12 chr9 59674013 59674342 -64401830 - ORR1D2 LTR MaLR -5 365 14 4 1040 1157 48 14 0 chr9 59674530 59674675 -64401497 + B1_Mm SINE Alu 1 147 0 4 1040 1218 219 117 24 chr9 59675315 59675656 -64400516 - ORR1D1 LTR MaLR -1 373 1 4 1040 500 180 0 33 chr9 59676282 59676374 -64399798 + B1_Mur2 SINE Alu 61 149 0 4 1040 1795 174 42 50 chr9 59676446 59676827 -64399345 - ORR1C1 LTR MaLR 0 378 1 4 1040 820 234 44 34 chr9 59676885 59677095 -64399077 + B3A SINE B2 2 186 -9 4 1040 1086 87 0 0 chr9 59677422 59677560 -64398612 + B1_Mus2 SINE Alu 4 141 -6 4 1040 24 53 0 0 chr9 59678302 59678340 -64397832 + AT_rich Low_complexity Low_complexity 1 38 0 4 1040 1672 26 0 0 chr9 59678853 59679045 -64397127 - B2_Mm1t SINE B2 0 193 2 4 1040 26 50 0 0 chr9 59679102 59679142 -64397030 + AT_rich Low_complexity Low_complexity 1 40 0 4 1040 204 40 0 0 chr9 59679184 59679209 -64396963 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1040 285 51 0 0 chr9 59681477 59681516 -64394656 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1040 11956 75 17 10 chr9 59681520 59684225 -64391947 - Lx3_Mus LINE L1 0 7009 4281 4 1040 405 0 0 0 chr9 59684231 59684276 -64391896 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 4 1040 1021 113 0 7 chr9 59684276 59684411 -64391761 - B1_Mus1 SINE Alu -12 136 2 4 1040 11956 72 14 7 chr9 59684411 59684452 -64391720 - Lx3_Mus LINE L1 -1606 4280 4243 4 1040 14544 80 10 4 chr9 59684448 59686509 -64389663 + Lx3_Mus LINE L1 2190 4262 -1624 4 1040 1533 42 0 30 chr9 59686584 59686781 -64389391 + B2_Mm1a SINE B2 1 191 -2 4 1040 522 371 92 37 chr9 59687459 59687786 -64388386 + MLT1F2 LTR MaLR 125 469 -91 4 1040 331 294 13 0 chr9 59687843 59687936 -64388236 + ID4 SINE ID 6 99 -53 4 1040 3840 166 60 3 chr9 59688295 59689006 -64387166 - Lx2B LINE L1 -416 6584 5833 4 1040 1084 204 43 109 chr9 59689006 59689113 -64387059 + Lx2B LINE L1 6600 6700 -300 4 1040 3848 112 3 33 chr9 59689113 59689711 -64386461 + L1_Mus4 LINE L1 6050 6629 -7 4 1040 1084 204 43 109 chr9 59689711 59689978 -64386194 + Lx2B LINE L1 6701 6948 -52 4 1040 229 249 216 16 chr9 59690016 59690261 -64385911 - L1M4c LINE L1 -1620 4759 4466 4 1040 25 0 0 0 chr9 59690402 59690427 -64385745 + AT_rich Low_complexity Low_complexity 1 25 0 4 1040 280 255 202 0 chr9 59690997 59691086 -64385086 - B1F1 SINE Alu -8 109 3 4 1040 21 0 0 0 chr9 59691447 59691468 -64384704 + AT_rich Low_complexity Low_complexity 1 21 0 4 1040 460 293 52 15 chr9 59691667 59691802 -64384370 - ID_B1 SINE B4 -5 219 80 4 1040 363 235 39 97 chr9 59691802 59692009 -64384163 - L1M4c LINE L1 -5450 934 740 4 1040 610 310 133 18 chr9 59692448 59692845 -64383327 - L1M4c LINE L1 -5685 699 257 4 1040 252 316 0 25 chr9 59692952 59693033 -64383139 + MER44D DNA MER2_type 53 131 -574 4 1040 1012 32 0 0 chr9 59693097 59693221 -64382951 - B1_Mus1 SINE Alu 0 148 25 4 1040 732 236 7 7 chr9 59693223 59693372 -64382800 - B1_Mur3 SINE Alu 0 149 1 4 1040 280 176 68 0 chr9 59693372 59693440 -64382732 + MER44D DNA MER2_type 524 596 -109 4 1040 1824 173 66 6 chr9 59693445 59693794 -64382378 - ORR1C1 LTR MaLR -8 370 1 4 1040 273 187 78 26 chr9 59693873 59693950 -64382222 - L1M4c LINE L1 -6269 115 35 4 1040 270 292 15 0 chr9 59694002 59694067 -64382105 - ID4_ SINE ID -17 66 1 4 1040 441 286 54 31 chr9 59694085 59694215 -64381957 - B1F1 SINE Alu -1 148 16 4 1040 180 0 0 0 chr9 59694243 59694263 -64381909 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1040 1019 52 89 0 chr9 59694263 59694398 -64381774 - B1_Mus2 SINE Alu 0 147 1 4 1040 284 204 18 18 chr9 59694525 59694580 -64381592 - B1F SINE Alu 0 149 95 4 1040 234 298 8 126 chr9 59694547 59694666 -64381506 - MT2B2 LTR ERVL -333 251 147 4 1040 537 355 104 17 chr9 59694936 59695283 -64380889 + L2a LINE L2 2550 2926 -493 4 1040 261 243 95 19 chr9 59695405 59695436 -64380736 - PB1D10 SINE Alu -7 142 18 4 1040 249 259 81 23 chr9 59695436 59695523 -64380649 - ID_B1 SINE B4 -34 190 99 4 1040 196 332 187 14 chr9 59695554 59695768 -64380404 + L2a LINE L2 3136 3386 -40 4 1040 412 226 145 0 chr9 59695962 59696086 -64380086 - B1_Mur2 SINE Alu -6 143 2 4 1040 17229 88 35 15 chr9 59696146 59699456 -64376716 + L1VL2 LINE L1 210 3591 -24 4 1040 261 163 0 0 chr9 59699456 59699505 -64376667 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 4 1040 1151 66 40 0 chr9 59699505 59699656 -64376516 - L1_Mus2 LINE L1 -252 6314 6158 4 1040 10248 78 2 2 chr9 59699656 59701151 -64375021 - L1_Mus2 LINE L1 -583 5983 4490 4 1040 9816 107 13 1 chr9 59701145 59702627 -64373545 + L1_Mus2 LINE L1 2985 4483 -1400 4 1040 199 324 0 0 chr9 59703946 59704014 -64372158 - MIR SINE MIR -62 200 133 4 1040 180 111 0 0 chr9 59704672 59704699 -64371473 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1040 1197 54 0 0 chr9 59704699 59704846 -64371326 - B1_Mus2 SINE Alu 0 147 1 4 1040 1217 98 33 0 chr9 59704988 59705171 -64371001 - B2_Mm2 SINE B2 -4 191 3 4 1040 389 342 0 8 chr9 59705436 59705554 -64370618 - MER58B DNA MER1_type -70 271 155 4 1040 671 112 9 0 chr9 59705537 59705644 -64370528 + URR1B DNA MER1_type 117 224 -1 4 1040 547 268 217 4 chr9 59705750 59706031 -64370141 + L1M3de LINE L1 2201 2404 -4523 4 1040 318 319 111 12 chr9 59706067 59706229 -64369943 + L1M3de LINE L1 2295 2472 -4862 4 1040 2210 80 26 0 chr9 59706348 59706659 -64369513 - ORR1A2 LTR MaLR -8 319 1 4 1040 1139 289 65 36 chr9 59706664 59707322 -64368850 + L1M3de LINE L1 4942 5618 -1382 4 1040 267 350 0 12 chr9 59707380 59707461 -64368711 + B4A SINE B4 3 82 -210 4 1040 470 261 153 37 chr9 59708289 59708452 -64367720 + B3A SINE B2 1 182 -16 4 1040 180 152 0 0 chr9 59708455 59708488 -64367684 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1040 378 256 23 0 chr9 59708740 59708826 -64367346 + PB1D10 SINE Alu 5 92 -25 4 1040 372 302 15 52 chr9 59708826 59708876 -64367296 + ID_B1 SINE B4 86 216 -8 4 1040 1115 75 14 0 chr9 59709651 59709798 -64366374 + B1_Mur4 SINE Alu 2 150 0 4 1040 180 111 0 0 chr9 59709798 59709825 -64366347 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 1040 327 292 15 0 chr9 59709943 59710008 -64366164 - RSINE1 SINE B4 -2 163 98 4 1040 588 258 56 37 chr9 59710071 59710232 -64365940 + RSINE1 SINE B4 2 165 0 4 1040 2316 146 52 50 chr9 59710520 59710980 -64365192 - RMER6B LTR ERVK 0 461 1 4 1040 268 263 10 10 chr9 59711849 59711945 -64364227 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 1040 652 282 33 14 chr9 59712544 59712756 -64363416 - B3 SINE B2 0 216 1 4 1040 273 232 0 0 chr9 59712836 59712905 -64363267 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1040 1327 40 0 17 chr9 59713075 59713252 -64362920 - L1Md_A LINE L1 0 6582 6409 5 1040 384 168 17 26 chr9 59713636 59713752 -64362420 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 5 1040 597 64 0 0 chr9 59713762 59713840 -64362332 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 1040 495 0 0 0 chr9 59713840 59713894 -64362278 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1040 533 250 52 0 chr9 59713894 59714010 -64362162 - RSINE1 SINE B4 -41 124 3 5 1040 26 0 0 0 chr9 59714141 59714167 -64362005 + AT_rich Low_complexity Low_complexity 1 26 0 5 1040 425 310 35 9 chr9 59714173 59714287 -64361885 + RSINE1 SINE B4 14 130 -35 5 1040 498 31 0 0 chr9 59714762 59714827 -64361345 - L1_Mus2 LINE L1 -1 6565 6501 5 1040 401 325 39 31 chr9 59714926 59715056 -64361116 + ID_B1 SINE B4 86 216 -8 5 1040 207 0 0 0 chr9 59715189 59715212 -64360960 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1040 1173 61 0 0 chr9 59715216 59715363 -64360809 - B1_Mm SINE Alu 0 147 1 5 1040 1101 294 170 23 chr9 59716196 59716638 -64359534 - Lx6 LINE L1 0 7460 6954 5 1040 321 318 55 0 chr9 59718039 59718149 -64358023 + PB1 SINE Alu 5 120 -7 5 1040 690 189 98 0 chr9 59720410 59720542 -64355630 - B1_Mur1 SINE Alu 0 149 5 5 1040 773 147 72 30 chr9 59721373 59721563 -64354609 - B3 SINE B2 -5 190 1 5 1040 733 311 3 84 chr9 59721718 59722016 -64354156 + B4A SINE B4 1 274 -18 5 1040 501 182 190 0 chr9 59722205 59722326 -64353846 + B1_Mur2 SINE Alu 5 148 -1 5 1040 605 305 66 31 chr9 59723519 59723715 -64352457 - MER58A DNA MER1_type -17 207 5 5 1040 247 276 0 0 chr9 59723888 59723946 -64352226 + PB1D10 SINE Alu 59 116 -1 5 1040 324 299 93 8 chr9 59723947 59724065 -64352107 + B1F SINE Alu 19 146 -3 5 1040 718 312 73 5 chr9 59724340 59724556 -64351616 + B4A SINE B4 1 231 -61 5 1040 345 224 191 27 chr9 59724556 59724666 -64351506 + B1_Mur1 SINE Alu 1 128 -21 5 1040 2778 41 3 3 chr9 59725146 59725492 -64350680 - L1Md_T LINE L1 0 6582 6237 5 1040 1584 27 11 0 chr9 59725536 59725721 -64350451 + B2_Mm1a SINE B2 1 187 -6 5 1040 24 53 0 0 chr9 59725794 59725832 -64350340 + AT_rich Low_complexity Low_complexity 1 38 0 5 1040 455 82 0 14 chr9 59726733 59726807 -64349365 - Lx LINE L1 -8 6646 6574 5 1040 232 210 32 16 chr9 59726948 59727011 -64349161 - L1MC4 LINE L1 -4562 1653 1590 5 1040 307 133 0 0 chr9 59727011 59727056 -64349116 + B2_Mm2 SINE B2 1 45 -150 5 1040 498 280 199 7 chr9 59727179 59727460 -64348712 - L1MC4 LINE L1 -4612 1603 1269 5 1040 225 0 0 0 chr9 59727722 59727747 -64348425 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 5 1040 825 310 73 6 chr9 59727797 59728283 -64347889 - Lx8 LINE L1 -227 7246 6713 5 1040 504 198 37 9 chr9 59728311 59728418 -64347754 - B1_Mur3 SINE Alu 0 149 40 5 1040 318 271 0 0 chr9 59728418 59728477 -64347695 - Lx8 LINE L1 -756 6717 6659 5 1040 667 267 24 12 chr9 59728478 59728645 -64347527 + Lx8 LINE L1 6457 6625 -848 5 1040 443 341 90 37 chr9 59728671 59728994 -64347178 - L1MC4 LINE L1 -5414 801 462 5 1040 325 345 9 17 chr9 59729013 59729128 -64347044 - PB1D7 SINE Alu -6 114 1 5 1040 729 219 0 0 chr9 59729593 59729730 -64346442 + B1_Mur1 SINE Alu 12 148 -1 5 1040 372 313 85 20 chr9 59729748 59729901 -64346271 + B3A SINE B2 36 198 0 5 1040 22 0 0 0 chr9 59730085 59730107 -64346065 + AT_rich Low_complexity Low_complexity 1 22 0 5 1040 738 342 25 29 chr9 59730398 59730603 -64345569 - B4 SINE B4 0 292 84 5 1040 194 91 0 29 chr9 59730603 59730637 -64345535 + (CCA)n Simple_repeat Simple_repeat 1 33 0 5 1040 738 342 25 29 chr9 59730637 59730708 -64345464 - B4 SINE B4 -209 83 17 5 1040 186 71 0 0 chr9 59731361 59731389 -64344783 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1040 1191 54 0 0 chr9 59731389 59731537 -64344635 - B1_Mus1 SINE Alu 0 148 1 5 1040 357 239 202 37 chr9 59731575 59731818 -64344354 - L1MEc LINE L1 -5357 1043 761 5 1040 751 171 0 8 chr9 59732503 59732633 -64343539 - B3 SINE B2 -86 130 2 5 1040 31 58 0 0 chr9 59732637 59732689 -64343483 + AT_rich Low_complexity Low_complexity 1 52 0 5 1040 180 0 0 0 chr9 59732856 59732876 -64343296 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1040 856 256 20 30 chr9 59733667 59733868 -64342304 + B3 SINE B2 2 200 -16 5 1040 28 48 0 0 chr9 59734037 59734079 -64342093 + AT_rich Low_complexity Low_complexity 1 42 0 5 1040 23 33 0 0 chr9 59734109 59734139 -64342033 + AT_rich Low_complexity Low_complexity 1 30 0 5 1040 6781 55 56 0 chr9 59734465 59735340 -64340832 + L1_Mus1 LINE L1 5644 6567 0 5 1040 758 216 15 0 chr9 59735440 59735574 -64340598 - B1_Mur4 SINE Alu -13 137 2 5 1040 1386 166 8 12 chr9 59735623 59735879 -64340293 - Lx4A LINE L1 -1 7057 6803 5 1040 690 312 100 48 chr9 59735940 59736209 -64339963 - B4A SINE B4 0 292 10 5 1040 345 321 119 18 chr9 59736300 59736468 -64339704 + HAL1 LINE L1 628 812 -1695 5 1040 314 269 80 51 chr9 59736496 59736633 -64339539 + ID_B1 SINE B4 84 224 0 5 1040 716 205 25 42 chr9 59736663 59736882 -64339290 - ORR1D2 LTR MaLR 0 370 142 5 1040 6335 55 0 0 chr9 59737565 59738348 -64337824 - L1_Mus2 LINE L1 0 6566 5784 5 1040 4618 83 15 1 chr9 59738348 59739013 -64337159 + MusHAL1 LINE L1 1746 2419 -293 5 1040 204 388 48 35 chr9 59739072 59739299 -64336873 - MIR SINE MIR -1 261 32 5 1040 4163 191 33 15 chr9 59739408 59740252 -64335920 - RMER1A Other Other 0 1030 43 5 1040 345 327 19 0 chr9 59740291 59740398 -64335774 - PB1D10 SINE Alu -6 111 3 5 1040 760 318 70 64 chr9 59740448 59740821 -64335351 - MTE2b LTR MaLR -4 375 1 5 1040 295 325 12 0 chr9 59743350 59743433 -64332739 + PB1D10 SINE Alu 2 85 -32 5 1040 627 290 89 22 chr9 59743877 59744057 -64332115 + ID_B1 SINE B4 1 192 -32 5 1040 328 276 82 0 chr9 59744562 59744696 -64331476 - L1MB7 LINE L1 -212 5972 5828 5 1040 241 344 0 0 chr9 59744737 59744801 -64331371 - ID4_ SINE ID -17 66 3 5 1040 484 276 82 22 chr9 59744848 59745196 -64330976 - L1MB7 LINE L1 -501 5677 5301 5 1040 441 241 95 17 chr9 59745226 59745445 -64330727 + L1M2 LINE L1 4876 5142 -738 5 1040 323 292 83 0 chr9 59745445 59745589 -64330583 + L1M2 LINE L1 5264 5419 -461 5 1040 712 281 6 25 chr9 59745601 59745881 -64330291 + L1MA4 LINE L1 4460 4763 -1380 5 1040 602 58 0 11 chr9 59745887 59745975 -64330197 + Lx LINE L1 6558 6644 -10 5 1040 1157 260 142 19 chr9 59746403 59746633 -64329539 + L1MA4 LINE L1 5352 5613 -687 5 1040 2191 143 82 3 chr9 59746633 59746998 -64329174 - ORR1B1 LTR MaLR 0 394 1 5 1040 1157 260 118 20 chr9 59746998 59747287 -64328885 + L1MA4 LINE L1 5614 5924 -376 5 1040 647 220 35 7 chr9 59747486 59747628 -64328544 + B1_Mur1 SINE Alu 3 148 -1 5 1040 376 258 268 30 chr9 59747711 59747879 -64328293 + Charlie1a DNA MER1_type 1248 1455 0 5 1040 1870 315 96 55 chr9 59748293 59749167 -64327005 - ORR1E-int LTR MaLR -670 910 1 5 1040 472 308 198 40 chr9 59749171 59749469 -64326703 - ORR1E LTR MaLR -6 353 9 5 1040 1149 102 209 0 chr9 59749585 59749772 -64326400 - URR1A DNA MER1_type 0 226 1 5 1040 323 232 24 0 chr9 59750057 59750139 -64326033 - PB1D9 SINE Alu 0 120 37 5 1040 299 286 26 18 chr9 59750881 59750995 -64325177 - MER112 DNA MER1_type 0 261 147 5 1040 800 196 7 20 chr9 59751216 59751367 -64324805 - B1_Mur2 SINE Alu 0 149 1 5 1040 1307 196 79 18 chr9 59751382 59751662 -64324510 + MTC LTR MaLR 123 419 -2 5 1040 258 292 54 70 chr9 59751998 59752127 -64324045 + L1MEg1 LINE L1 503 629 -5606 5 1040 255 277 243 44 chr9 59752162 59752298 -64323874 - RSINE1 SINE B4 0 165 3 5 1040 21 57 0 0 chr9 59752549 59752584 -64323588 + AT_rich Low_complexity Low_complexity 1 35 0 5 1040 472 264 72 0 chr9 59753113 59753238 -64322934 - B1F SINE Alu 0 149 16 5 1040 540 215 289 0 chr9 59753118 59753287 -64322885 - ID_B1 SINE B4 -5 219 2 5 1040 756 232 0 0 chr9 59756111 59756249 -64319923 - B1_Mur2 SINE Alu -6 143 6 5 1040 327 328 103 8 chr9 59756138 59756264 -64319908 - B4 SINE B4 -87 205 68 5 1040 313 279 0 0 chr9 59756315 59756376 -64319796 + ID4 SINE ID 5 65 -18 5 1040 796 200 200 0 chr9 59756755 59756930 -64319242 + B3 SINE B2 1 210 -6 5 1040 3414 33 2 0 chr9 59756938 59757333 -64318839 - MTA_Mm LTR MaLR 0 396 1 5 1040 358 292 98 61 chr9 59758071 59758235 -64317937 - MER5B DNA MER1_type -6 172 3 5 1040 1663 204 71 51 chr9 59759487 59759533 -64316639 - MTD LTR MaLR 0 419 383 5 1040 225 0 0 0 chr9 59759533 59759558 -64316614 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1040 189 0 0 0 chr9 59759558 59759578 -64316594 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1040 1663 204 71 51 chr9 59759578 59759939 -64316233 - MTD LTR MaLR -37 382 4 5 1040 754 124 57 21 chr9 59761448 59761588 -64314584 - URR1A DNA MER1_type 0 226 82 5 1040 319 319 153 67 chr9 59761658 59762004 -64314168 - Charlie1a DNA MER1_type -762 693 318 5 1040 668 339 48 63 chr9 59762024 59762295 -64313877 - Charlie1a DNA MER1_type -1184 271 5 5 1040 230 267 133 0 chr9 59762306 59762366 -64313806 + ID4_ SINE ID 4 71 -12 5 1040 320 356 81 6 chr9 59763506 59763667 -64312505 - L1ME3 LINE L1 -222 5940 5768 5 1040 296 155 7 76 chr9 59763712 59763786 -64312386 - L1ME3 LINE L1 -492 5670 5598 5 1040 272 307 30 0 chr9 59764024 59764125 -64312047 - L1ME3 LINE L1 -867 5279 5176 5 1040 291 350 0 57 chr9 59764127 59764251 -64311921 + PB1D10 SINE Alu 1 117 0 5 1040 3102 14 0 0 chr9 59764269 59764615 -64311557 + ORR1A0 LTR MaLR 1 346 0 5 1040 346 282 169 82 chr9 59764903 59765158 -64311014 - B4 SINE B4 -14 278 2 5 1040 468 269 204 11 chr9 59765489 59765846 -64310326 - L1ME3 LINE L1 -1777 4369 3944 5 1040 267 289 48 0 chr9 59765900 59765983 -64310189 - PB1D9 SINE Alu -8 112 26 5 1040 825 149 21 14 chr9 59766154 59766297 -64309875 + B1_Mur1 SINE Alu 2 145 -4 5 1040 765 74 0 18 chr9 59766627 59766737 -64309435 + B1_Mus2 SINE Alu 40 147 0 5 1040 577 202 8 98 chr9 59766749 59766881 -64309291 - B1_Mur4 SINE Alu -13 137 18 5 1040 449 179 261 17 chr9 59766912 59767031 -64309141 - B1F SINE Alu -1 148 1 6 1040 237 33 0 0 chr9 59767155 59767185 -64308987 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 1040 1118 37 0 0 chr9 59767185 59767319 -64308853 - B1_Mm SINE Alu -13 134 1 6 1040 1007 197 20 10 chr9 59767351 59767551 -64308621 - B3 SINE B2 -14 202 1 6 1040 293 280 133 48 chr9 59768177 59768342 -64307830 - L1ME3 LINE L1 -5458 784 606 5 1040 459 261 42 8 chr9 59768535 59768655 -64307517 - MER58B DNA MER1_type 0 341 218 6 1041 244 309 42 76 chr9 59768933 59769052 -64307120 - Tigger7 DNA MER2_type -1951 540 426 6 1041 287 290 80 0 chr9 59769123 59769223 -64306949 + MER3 DNA MER1_type 2 109 -100 6 1041 188 250 39 59 chr9 59769791 59769842 -64306330 - MIRm SINE MIR -16 260 211 6 1041 233 288 136 0 chr9 59771084 59771150 -64305022 - MIR3 SINE MIR -23 185 111 6 1041 941 231 0 73 chr9 59771638 59771857 -64304315 + B3 SINE B2 3 205 -11 6 1041 447 218 0 0 chr9 59771857 59771958 -64304214 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 6 1041 1069 15 90 0 chr9 59771978 59772112 -64304060 - B1_Mm SINE Alu 0 147 2 6 1041 254 253 41 103 chr9 59772134 59772152 -64304020 + MT2B LTR ERVL 155 243 -356 6 1041 332 187 156 26 chr9 59772152 59772229 -64303943 + PB1D9 SINE Alu 1 87 -33 6 1041 188 135 27 0 chr9 59774267 59774304 -64301868 + CT-rich Low_complexity Low_complexity 3 40 0 6 1041 630 253 58 7 chr9 59778563 59778718 -64297454 + RSINE1 SINE B4 3 165 0 6 1041 1302 285 155 15 chr9 59778797 59779770 -64296402 + L1M2 LINE L1 1794 2909 -3936 6 1041 439 207 231 0 chr9 59779770 59779891 -64296281 + B1F1 SINE Alu 1 149 0 6 1041 520 270 53 24 chr9 59779891 59779998 -64296174 + L1M2 LINE L1 2910 3027 -3818 6 1041 198 71 0 0 chr9 59780001 59780029 -64296143 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1041 13944 57 6 1 chr9 59780032 59782548 -64293624 - L1Md_F2 LINE L1 0 6582 4055 6 1041 265 248 46 37 chr9 59782533 59782642 -64293530 + L1M2 LINE L1 3019 3128 -3714 6 1041 581 292 23 64 chr9 59782840 59783012 -64293160 + RSINE1 SINE B4 1 165 0 6 1041 973 289 142 31 chr9 59783037 59783667 -64292505 + L1M2 LINE L1 3142 3847 -2998 6 1041 941 174 0 0 chr9 59783667 59783816 -64292356 + B1_Mur3 SINE Alu 1 149 0 6 1041 973 289 142 31 chr9 59783816 59783831 -64292341 + L1M2 LINE L1 3848 3859 -2986 6 1041 2702 56 0 3 chr9 59783833 59784156 -64292016 + RLTRETN_Mm LTR ERVK 1 322 0 6 1041 1529 42 0 5 chr9 59784170 59784359 -64291813 - RLTRETN_Mm LTR ERVK -134 188 1 6 1041 2169 275 138 108 chr9 59784361 59784909 -64291263 + L1M2 LINE L1 3852 4458 -2387 6 1041 307 277 125 0 chr9 59784909 59785021 -64291151 + B1F1 SINE Alu 1 126 -23 6 1041 2169 275 138 108 chr9 59785021 59785202 -64290970 + L1M2 LINE L1 4459 4660 -2185 6 1041 777 167 22 29 chr9 59785202 59785338 -64290834 + B1_Mus1 SINE Alu 3 137 -11 6 1041 2169 275 138 108 chr9 59785338 59786469 -64289703 + L1M2 LINE L1 4661 5883 -962 6 1041 413 226 51 41 chr9 59786561 59786796 -64289376 + L1M2 LINE L1 5870 6106 -940 6 1041 316 132 19 0 chr9 59786797 59786850 -64289322 - B3A SINE B2 -56 142 89 6 1041 962 286 161 3 chr9 59786969 59787285 -64288887 - MTD LTR MaLR -36 383 18 6 1041 199 266 125 58 chr9 59787399 59787519 -64288653 + MIRc SINE MIR 7 137 -131 6 1041 603 243 72 3 chr9 59788566 59788715 -64287457 + B3A SINE B2 55 212 -4 6 1041 456 91 0 0 chr9 59788715 59788781 -64287391 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 6 1041 21 0 0 0 chr9 59788955 59788976 -64287196 + GC_rich Low_complexity Low_complexity 1 21 0 6 1041 185 224 48 95 chr9 59789146 59789230 -64286942 + L4 LINE RTE 1309 1388 -641 6 1041 216 0 0 0 chr9 59789397 59789421 -64286751 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 6 1041 493 291 38 50 chr9 59789422 59789581 -64286591 - RSINE1 SINE B4 -4 161 5 6 1041 702 0 0 0 chr9 59790241 59790319 -64285853 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1041 402 21 0 0 chr9 59790319 59790365 -64285807 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1041 227 210 97 0 chr9 59790595 59790657 -64285515 - L1ME3 LINE L1 -2 6160 6093 6 1041 366 305 138 65 chr9 59790868 59791159 -64285013 - L1ME3A LINE L1 -280 5893 5582 6 1041 366 74 0 0 chr9 59791557 59791611 -64284561 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1041 627 278 124 30 chr9 59791617 59791851 -64284321 - B4A SINE B4 -1 291 36 6 1041 185 100 50 0 chr9 59792163 59792203 -64283969 + (CCCA)n Simple_repeat Simple_repeat 1 42 0 6 1041 351 361 105 12 chr9 59792383 59792554 -64283618 + ID_B1 SINE B4 33 219 -5 6 1041 254 107 119 51 chr9 59792715 59792774 -64283398 - B4A SINE B4 -13 279 217 6 1041 249 301 94 31 chr9 59792765 59792861 -64283311 - B3 SINE B2 0 216 115 6 1041 703 331 26 45 chr9 59792814 59793083 -64283089 - B4A SINE B4 -2 290 27 6 1041 217 261 28 28 chr9 59793031 59793102 -64283070 - B3A SINE B2 -121 77 7 6 1041 361 262 163 23 chr9 59793093 59793222 -64282950 - B4A SINE B4 -59 233 87 6 1041 225 0 0 0 chr9 59793810 59793835 -64282337 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1041 736 142 66 22 chr9 59794366 59794503 -64281669 - B1_Mus2 SINE Alu 0 147 5 6 1041 222 62 0 0 chr9 59797766 59797798 -64278374 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 6 1041 338 296 83 32 chr9 59798573 59798730 -64277442 + MIRb SINE MIR 69 233 -35 6 1041 186 341 26 35 chr9 59799569 59799689 -64276483 - MIR SINE MIR -80 182 65 6 1041 368 224 13 0 chr9 59801043 59801119 -64275053 - ID_B1 SINE B4 -14 210 134 6 1041 533 274 96 0 chr9 59801498 59801644 -64274528 - ID_B1 SINE B4 -60 164 5 6 1041 682 339 30 30 chr9 59801894 59802162 -64274010 - LTR83 LTR ERVL -18 762 495 6 1041 186 43 0 0 chr9 59802272 59802295 -64273877 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1041 635 172 17 22 chr9 59802327 59802505 -64273667 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 6 1041 370 205 17 8 chr9 59802530 59802648 -64273524 + (TATG)n Simple_repeat Simple_repeat 2 120 0 6 1041 662 326 86 7 chr9 59802649 59802918 -64273254 - B4A SINE B4 0 292 3 6 1041 180 0 0 0 chr9 59803228 59803248 -64272924 + (CACCC)n Simple_repeat Simple_repeat 4 23 0 6 1041 237 87 371 90 chr9 59803395 59803484 -64272688 - PB1D9 SINE Alu -2 118 5 6 1041 1212 79 0 0 chr9 59804113 59804278 -64271894 + (TC)n Simple_repeat Simple_repeat 2 166 0 6 1041 215 125 25 0 chr9 59804278 59804318 -64271854 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1041 586 316 67 26 chr9 59804329 59804599 -64271573 - B4A SINE B4 -11 281 1 6 1041 379 259 12 0 chr9 59804762 59804843 -64271329 - ID2 SINE ID 0 83 2 6 1041 837 121 53 0 chr9 59806185 59806317 -64269855 + B1_Mur4 SINE Alu 9 147 -3 6 1041 254 284 149 0 chr9 59806506 59806573 -64269599 - RSINE1 SINE B4 -43 122 46 6 1041 1086 142 15 45 chr9 59806619 59806818 -64269354 - B2_Mm2 SINE B2 0 195 3 6 1041 3799 152 183 18 chr9 59807564 59808329 -64267843 + RMER17B LTR ERVK 1 891 -67 6 1041 614 224 0 99 chr9 59808551 59808774 -64267398 - Lx2B LINE L1 -10 6990 6790 6 1041 561 189 30 22 chr9 59809323 59809458 -64266714 + L1_Mur3 LINE L1 2880 3015 -2865 6 1041 267 31 0 0 chr9 59810220 59810252 -64265920 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 1041 230 229 79 32 chr9 59810260 59810323 -64265849 - ID_B1 SINE B4 -33 191 126 6 1041 518 43 14 0 chr9 59810364 59810433 -64265739 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1041 317 268 0 47 chr9 59811207 59811293 -64264879 - B4 SINE B4 -206 86 5 6 1041 3324 48 2 5 chr9 59811812 59812209 -64263963 - MTA_Mm LTR MaLR 0 396 1 6 1041 524 265 83 45 chr9 59812381 59812718 -64263454 + RMER17C LTR ERVK 1 381 -577 6 1041 1205 235 117 18 chr9 59813286 59813620 -64262552 + ORR1D2 LTR MaLR 2 368 -2 6 1041 195 42 0 0 chr9 59813629 59813653 -64262519 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 6 1041 574 237 168 19 chr9 59813725 59814012 -64262160 + MTD LTR MaLR 18 404 -15 6 1041 1636 138 195 59 chr9 59814358 59814539 -64261633 + ORR1C2 LTR MaLR 1 170 -214 6 1041 180 0 0 0 chr9 59814539 59814559 -64261613 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 6 1041 1636 138 195 59 chr9 59814559 59814715 -64261457 + ORR1C2 LTR MaLR 171 383 -1 6 1041 360 0 0 0 chr9 59816435 59816475 -64259697 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1041 1177 204 91 8 chr9 59816478 59816730 -64259442 - B4 SINE B4 -18 274 2 6 1041 423 0 0 0 chr9 59817478 59817525 -64258647 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1041 246 262 88 0 chr9 59818247 59818327 -64257845 - L3 LINE CR1 -167 4322 4236 6 1041 196 304 55 69 chr9 59819599 59819744 -64256428 + MIRc SINE MIR 99 241 -27 6 1041 459 123 0 0 chr9 59820474 59820555 -64255617 + (TATG)n Simple_repeat Simple_repeat 1 81 0 6 1041 1249 48 0 0 chr9 59820726 59820873 -64255299 + B1_Mus1 SINE Alu 2 148 0 6 1041 350 227 53 0 chr9 59820909 59820984 -64255188 + B4A SINE B4 214 292 0 6 1041 240 236 13 40 chr9 59820964 59821039 -64255133 - RLTR22_Mur LTR ERVK -483 1365 1293 6 1041 432 224 0 12 chr9 59821045 59821131 -64255041 - B4A SINE B4 -207 85 1 6 1041 905 76 231 12 chr9 59821146 59821306 -64254866 - B2_Mm2 SINE B2 0 195 1 6 1041 576 230 76 151 chr9 59821659 59821884 -64254288 - ID_B1 SINE B4 -12 212 5 6 1041 393 370 49 21 chr9 59822062 59822305 -64253867 - L1M5 LINE L1 -913 5233 4984 6 1041 265 290 0 0 chr9 59822320 59822389 -64253783 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1041 226 265 59 0 chr9 59822579 59822647 -64253525 - L1M5 LINE L1 -1407 4739 4668 6 1041 382 307 126 33 chr9 59822750 59822932 -64253240 + B4 SINE B4 45 243 -49 6 1041 709 311 106 7 chr9 59823065 59823347 -64252825 + Kanga11a DNA Tc2 200 509 -461 6 1041 724 250 46 0 chr9 59823363 59823559 -64252613 - ID_B1 SINE B4 -4 220 16 6 1041 265 288 110 35 chr9 59823624 59823797 -64252375 + Kanga11a DNA Tc2 511 696 -274 6 1041 29 0 0 0 chr9 59824488 59824517 -64251655 + AT_rich Low_complexity Low_complexity 1 29 0 6 1041 995 222 19 14 chr9 59824635 59824850 -64251322 + B3 SINE B2 1 216 0 6 1041 252 86 0 0 chr9 59824855 59824890 -64251282 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1041 720 189 53 8 chr9 59825006 59825139 -64251033 - B1_Mur1 SINE Alu -5 144 6 7 1041 798 193 7 7 chr9 59825173 59825324 -64250848 - RSINE1 SINE B4 -8 157 7 7 1041 45 19 0 0 chr9 59825328 59825380 -64250792 + AT_rich Low_complexity Low_complexity 1 52 0 7 1041 444 116 116 0 chr9 59825386 59825455 -64250717 - ID_B1 SINE B4 -4 220 144 7 1041 557 305 103 42 chr9 59825476 59825787 -64250385 - Lx8 LINE L1 -3 7470 7141 7 1041 291 281 28 103 chr9 59825788 59825895 -64250277 - PB1 SINE Alu -28 99 1 7 1041 844 196 46 0 chr9 59825895 59825971 -64250201 - ID SINE ID -137 87 5 7 1041 291 306 40 24 chr9 59826006 59826130 -64250042 - L1MC5 LINE L1 -517 7444 7319 7 1041 1652 42 0 0 chr9 59826311 59826501 -64249671 + B2_Mm1a SINE B2 1 190 -3 7 1041 511 176 0 71 chr9 59826636 59826734 -64249438 - B1_Mur4 SINE Alu -1 149 59 7 1041 246 267 0 0 chr9 59826766 59826826 -64249346 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1041 680 260 52 78 chr9 59826827 59826901 -64249271 - B4A SINE B4 0 292 232 7 1041 441 0 0 0 chr9 59826901 59826950 -64249222 + (TATG)n Simple_repeat Simple_repeat 2 50 0 7 1041 709 203 22 0 chr9 59826950 59827088 -64249084 - B1_Mur2 SINE Alu -8 141 1 7 1041 680 260 52 78 chr9 59827088 59827204 -64248968 - B4A SINE B4 -61 231 107 7 1041 768 169 48 0 chr9 59827891 59828015 -64248157 + B3 SINE B2 1 130 -86 7 1041 760 291 89 0 chr9 59828085 59828288 -64247884 + B4A SINE B4 1 221 -71 7 1041 1604 100 8 8 chr9 59828290 59828531 -64247641 + L1_Mus3 LINE L1 6398 6638 0 7 1041 309 22 0 0 chr9 59828871 59828916 -64247256 + L1_Mus2 LINE L1 6522 6566 0 7 1041 903 191 0 23 chr9 59829371 59829548 -64246624 + B2_Mm2 SINE B2 2 174 -21 7 1041 207 200 0 24 chr9 59829550 59829591 -64246581 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1041 648 293 22 96 chr9 59829593 59829906 -64246266 - B4A SINE B4 0 292 3 7 1041 22 0 0 0 chr9 59829917 59829939 -64246233 + AT_rich Low_complexity Low_complexity 1 22 0 7 1041 925 136 0 14 chr9 59829943 59830085 -64246087 - B1_Mus2 SINE Alu -6 141 2 7 1041 229 272 141 0 chr9 59830215 59830307 -64245865 + L2a LINE L2 3316 3420 -6 7 1041 325 330 28 9 chr9 59830855 59830962 -64245210 + MER44D DNA MER2_type 10 118 -587 7 1041 678 242 6 19 chr9 59831298 59831454 -64244718 - B4A SINE B4 -4 288 135 7 1041 257 321 122 61 chr9 59831448 59831793 -64244379 + MER34 LTR ERV1 158 523 -19 7 1041 887 87 151 0 chr9 59831971 59832097 -64244075 + B1_Mus2 SINE Alu 3 147 0 7 1041 915 176 0 13 chr9 59832208 59832358 -64243814 + B1_Mur1 SINE Alu 1 148 -1 7 1041 541 310 18 6 chr9 59832385 59832558 -64243614 + B3A SINE B2 30 203 -13 7 1041 234 278 126 29 chr9 59832520 59832664 -64243508 - RLTR21 LTR ERVK -316 1256 1092 7 1041 539 92 0 11 chr9 59832664 59832752 -64243420 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 1041 234 278 126 29 chr9 59832752 59832781 -64243391 - RLTR21 LTR ERVK -481 1091 1066 7 1041 712 224 14 7 chr9 59833349 59833497 -64242675 - B1_Mur1 SINE Alu 0 149 1 7 1041 777 230 136 10 chr9 59833508 59833706 -64242466 - B4A SINE B4 -68 224 2 7 1041 2040 162 21 21 chr9 59834370 59834748 -64241424 + ORR1C1 LTR MaLR 1 378 0 7 1041 258 307 49 10 chr9 59834823 59834925 -64241247 + RMER15 LTR ERVL 378 483 -92 7 1041 359 65 348 18 chr9 59837302 59837414 -64238758 - B2_Mm2 SINE B2 0 195 47 7 1041 1274 108 11 0 chr9 59837450 59837626 -64238546 - B2_Mm1t SINE B2 -14 179 2 7 1041 954 254 57 0 chr9 59838315 59838563 -64237609 + Lx8 LINE L1 6671 6932 -541 7 1041 933 211 58 14 chr9 59838915 59839122 -64237050 - B3 SINE B2 0 216 1 7 1041 1332 68 5 59 chr9 59839917 59840119 -64236053 + B2_Mm2 SINE B2 4 194 -1 7 1041 523 301 77 51 chr9 59840387 59840583 -64235589 - RMER30 DNA MER1_type 0 202 2 7 1041 565 249 162 11 chr9 59840963 59841142 -64235030 + B3 SINE B2 2 207 -9 7 1041 1264 204 50 78 chr9 59841520 59841896 -64234276 + MTEb LTR MaLR 1 364 -15 7 1041 237 155 0 0 chr9 59842701 59842759 -64233413 + CT-rich Low_complexity Low_complexity 1 58 0 7 1041 631 325 46 35 chr9 59842759 59843043 -64233129 - B4 SINE B4 -4 288 2 7 1041 1319 58 23 0 chr9 59843273 59843444 -64232728 + B2_Mm2 SINE B2 13 187 -8 7 1041 1151 259 58 77 chr9 59843472 59843899 -64232273 + LTR65 LTR ERV1 251 669 0 7 1041 524 121 96 32 chr9 59844161 59844255 -64231917 - B1_Mus2 SINE Alu -5 142 43 7 1041 273 256 61 49 chr9 59844189 59844271 -64231901 - RLTR25B LTR ERVK -518 510 428 7 1041 265 287 119 65 chr9 59844287 59844455 -64231717 + MER77 LTR ERVL 73 249 -358 7 1041 307 292 193 0 chr9 59844502 59844694 -64231478 + MER77 LTR ERVL 370 598 -9 7 1041 782 220 114 10 chr9 59845270 59845463 -64230709 + B3 SINE B2 1 213 -3 7 1041 350 379 64 45 chr9 59845524 59845964 -64230208 + L1MC LINE L1 5352 5799 -2083 7 1041 24 0 0 0 chr9 59846744 59846768 -64229404 + AT_rich Low_complexity Low_complexity 1 24 0 7 1041 192 97 0 0 chr9 59846847 59846878 -64229294 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 7 1041 514 327 55 25 chr9 59846963 59847198 -64228974 - B4A SINE B4 -1 291 50 7 1041 609 265 155 9 chr9 59847268 59847481 -64228691 + MLT1D LTR MaLR 253 496 -9 7 1041 231 36 0 0 chr9 59847668 59847696 -64228476 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 1041 211 122 12 108 chr9 59848477 59848522 -64227650 + A-rich Low_complexity Low_complexity 4 42 0 7 1041 387 0 0 0 chr9 59848522 59848565 -64227607 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1041 211 122 12 108 chr9 59848565 59848602 -64227570 + A-rich Low_complexity Low_complexity 43 78 0 7 1041 26 30 0 0 chr9 59849677 59849710 -64226462 + AT_rich Low_complexity Low_complexity 1 33 0 7 1041 927 240 129 8 chr9 59849804 59850060 -64226112 - B4 SINE B4 -5 287 1 7 1041 231 340 61 25 chr9 59851175 59851338 -64224834 + Charlie8 DNA MER1_type 37 205 -2223 7 1041 1859 157 72 23 chr9 59851379 59851724 -64224448 - Lx4B LINE L1 -7 7051 6690 7 1041 180 0 0 0 chr9 59851857 59851877 -64224295 + (TC)n Simple_repeat Simple_repeat 2 21 0 7 1041 279 0 0 0 chr9 59851877 59851907 -64224265 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1041 469 312 117 57 chr9 59851914 59852162 -64224010 - B4A SINE B4 -29 263 1 7 1041 1174 214 112 14 chr9 59852275 59852560 -64223612 + ORR1E LTR MaLR 2 314 -45 7 1041 1182 187 153 23 chr9 59852763 59853070 -64223102 + Lx8 LINE L1 6773 7119 -354 7 1041 227 193 0 81 chr9 59853089 59853151 -64223021 + Lx8 LINE L1 7301 7357 -116 7 1041 1211 50 0 0 chr9 59853390 59853531 -64222641 + B1_Mus1 SINE Alu 1 141 -7 7 1041 360 0 0 0 chr9 59853533 59853573 -64222599 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 1041 246 263 17 42 chr9 59853579 59853698 -64222474 - L1MC5 LINE L1 -44 7917 7802 7 1041 923 243 18 40 chr9 59853854 59854077 -64222095 + ID_B1 SINE B4 7 224 0 7 1041 1248 196 0 0 chr9 59854086 59854300 -64221872 + B3 SINE B2 2 215 -1 7 1041 463 276 85 40 chr9 59854337 59854529 -64221643 + B3A SINE B2 7 193 -2 7 1041 249 33 0 0 chr9 59854731 59854761 -64221411 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1041 375 41 0 0 chr9 59854786 59854835 -64221337 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1041 312 111 0 0 chr9 59854835 59854888 -64221284 + (CAGAGA)n Simple_repeat Simple_repeat 4 57 0 7 1041 699 182 22 15 chr9 59854888 59855013 -64221159 - B1_Mus1 SINE Alu -19 129 3 7 1041 228 335 76 19 chr9 59855422 59855580 -64220592 + L1M5 LINE L1 5537 5703 -421 7 1041 435 19 0 0 chr9 59855724 59855776 -64220396 + (TATG)n Simple_repeat Simple_repeat 1 52 0 7 1041 326 310 195 70 chr9 59855809 59856066 -64220106 - B4 SINE B4 -2 290 2 7 1041 26 0 0 0 chr9 59856070 59856096 -64220076 + AT_rich Low_complexity Low_complexity 1 26 0 7 1041 387 60 0 0 chr9 59856173 59856223 -64219949 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1041 573 187 0 9 chr9 59856337 59856445 -64219727 - B1F2 SINE Alu -8 141 35 7 1041 366 252 111 0 chr9 59857288 59857387 -64218785 - PB1D10 SINE Alu -5 112 3 7 1041 573 294 80 25 chr9 59857387 59857565 -64218607 - B4 SINE B4 -44 248 60 7 1041 246 229 16 0 chr9 59857548 59857609 -64218563 + B4A SINE B4 231 292 0 7 1041 239 222 12 0 chr9 59857609 59857690 -64218482 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1041 2042 211 7 19 chr9 59858474 59858895 -64217277 - MTD LTR MaLR -3 416 1 7 1041 378 0 0 0 chr9 59859897 59859939 -64216233 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1041 1855 138 113 57 chr9 59860153 59860507 -64215665 - ORR1C1 LTR MaLR 0 378 5 7 1041 2856 16 3 0 chr9 59860616 59860937 -64215235 + RLTRETN_Mm LTR ERVK 1 322 0 7 1041 518 255 41 34 chr9 59861073 59861219 -64214953 + RSINE1 SINE B4 2 148 -17 7 1041 248 325 0 67 chr9 59861751 59861840 -64214332 + MER5A DNA MER1_type 4 86 -103 7 1041 336 268 96 55 chr9 59861855 59862001 -64214171 - MLT1A1 LTR MaLR -5 403 252 7 1041 471 73 0 0 chr9 59862168 59862236 -64213936 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1041 231 288 69 170 chr9 59862264 59862423 -64213749 - B1F1 SINE Alu -6 143 1 7 1041 672 265 41 12 chr9 59862460 59862632 -64213540 - B3A SINE B2 -20 178 2 7 1041 481 245 10 10 chr9 59862632 59862727 -64213445 - B4A SINE B4 -196 96 2 8 1041 495 48 0 0 chr9 59863292 59863354 -64212818 + (TC)n Simple_repeat Simple_repeat 2 63 0 8 1041 202 234 0 0 chr9 59864121 59864168 -64212004 + T-rich Low_complexity Low_complexity 1 47 0 8 1041 351 0 0 0 chr9 59864168 59864207 -64211965 + (CAAAA)n Simple_repeat Simple_repeat 4 42 0 8 1041 817 304 75 20 chr9 59864211 59864466 -64211706 - B4A SINE B4 -22 270 2 8 1041 364 223 77 10 chr9 59864467 59864571 -64211601 - L1MEf LINE L1 -2206 3940 3830 8 1041 405 0 0 0 chr9 59864644 59864689 -64211483 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1041 565 275 45 8 chr9 59864702 59864834 -64211338 - RSINE1 SINE B4 -17 148 12 8 1041 503 244 120 13 chr9 59864851 59865099 -64211073 - L1MA6 LINE L1 -4 6296 5997 8 1041 626 306 45 67 chr9 59865114 59865693 -64210479 - L1MD LINE L1 -2309 3837 3272 8 1041 24 0 0 0 chr9 59865723 59865747 -64210425 + AT_rich Low_complexity Low_complexity 1 24 0 8 1041 369 0 0 0 chr9 59865764 59865805 -64210367 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1041 998 256 128 14 chr9 59865812 59866101 -64210071 - ORR1D2 LTR MaLR 0 370 49 8 1041 298 238 23 35 chr9 59866088 59866175 -64209997 + ORR1D2 LTR MaLR 282 367 -3 8 1041 611 192 80 0 chr9 59866249 59866374 -64209798 - B3 SINE B2 -74 142 8 8 1041 248 253 236 55 chr9 59866388 59866681 -64209491 - L1MB8 LINE L1 -12 6166 5821 8 1041 565 246 24 0 chr9 59866695 59866821 -64209351 - RSINE1 SINE B4 -26 139 11 8 1041 465 299 57 72 chr9 59866821 59867084 -64209088 - L1MD LINE L1 -3229 2917 2659 8 1041 613 241 27 33 chr9 59867198 59867348 -64208824 - B1_Mur2 SINE Alu 0 149 1 8 1041 334 293 123 39 chr9 59867356 59867713 -64208459 - L1MEf LINE L1 -3870 2276 1890 8 1041 961 301 0 48 chr9 59868365 59868585 -64207587 + B4 SINE B4 52 261 -31 8 1041 549 0 0 0 chr9 59868585 59868646 -64207526 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 8 1041 961 301 0 48 chr9 59868646 59868676 -64207496 + B4 SINE B4 262 290 -2 8 1041 521 308 0 34 chr9 59869504 59869679 -64206493 - MER5B DNA MER1_type 0 178 10 8 1041 422 79 16 0 chr9 59870524 59870587 -64205585 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1041 499 189 225 0 chr9 59870952 59871063 -64205109 - B1_Mur1 SINE Alu -7 142 7 8 1041 859 266 61 22 chr9 59871339 59871616 -64204556 + B4A SINE B4 5 292 0 8 1041 319 253 12 0 chr9 59871616 59871786 -64204386 + (CA)n Simple_repeat Simple_repeat 1 172 0 8 1041 455 216 6 0 chr9 59871811 59871978 -64204194 + (CA)n Simple_repeat Simple_repeat 2 169 0 8 1041 216 212 0 0 chr9 59872019 59872085 -64204087 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1041 1142 148 128 0 chr9 59873932 59874128 -64202044 + URR1A DNA MER1_type 3 223 -3 8 1041 591 149 213 8 chr9 59875496 59875618 -64200554 + B1_Mur1 SINE Alu 2 148 -1 8 1041 242 288 0 27 chr9 59876040 59876115 -64200057 + MIR3 SINE MIR 109 181 -27 8 1041 1081 217 14 0 chr9 59876700 59876912 -64199260 - B3 SINE B2 -1 215 1 8 1041 297 270 0 86 chr9 59877203 59877233 -64198939 - B4 SINE B4 0 292 265 8 1041 345 102 0 0 chr9 59877233 59877292 -64198880 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 8 1041 372 22 0 0 chr9 59877295 59877340 -64198832 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1041 297 270 0 86 chr9 59877340 59877386 -64198786 - B4 SINE B4 -28 264 219 8 1041 481 219 140 70 chr9 59877408 59877565 -64198607 - B2_Mm2 SINE B2 -27 168 1 8 1041 756 278 27 18 chr9 59877578 59877798 -64198374 - B4 SINE B4 -69 223 2 8 1041 1247 185 24 0 chr9 59878247 59878458 -64197714 + B3 SINE B2 1 216 0 8 1041 660 243 13 20 chr9 59878496 59878647 -64197525 - RSINE1 SINE B4 -14 151 2 8 1041 2929 52 27 47 chr9 59879158 59879500 -64196672 + MTA_Mm LTR MaLR 2 342 -54 8 1041 1943 151 174 11 chr9 59879500 59879861 -64196311 + RLTR9B2 LTR ERVK 1 420 0 8 1041 2929 52 27 47 chr9 59879861 59879921 -64196251 + MTA_Mm LTR MaLR 343 396 0 8 1041 1365 296 52 59 chr9 59879944 59880604 -64195568 - L1MA9 LINE L1 -271 6041 5387 8 1041 317 294 210 11 chr9 59881273 59881621 -64194551 - L1MC4 LINE L1 -5709 506 90 8 1041 652 286 58 48 chr9 59881684 59881890 -64194282 - B4A SINE B4 0 292 85 8 1041 228 397 15 0 chr9 59882254 59882385 -64193787 - MIR SINE MIR -5 257 125 8 1041 277 186 85 0 chr9 59882442 59882501 -64193671 - MIRc SINE MIR -122 146 83 8 1041 312 183 33 0 chr9 59883445 59883505 -64192667 + L1MD2 LINE L1 6293 6354 -5 8 1041 323 45 0 22 chr9 59884003 59884049 -64192123 + (TATG)n Simple_repeat Simple_repeat 2 46 0 8 1041 616 266 21 14 chr9 59884054 59884199 -64191973 - B3 SINE B2 -67 149 4 8 1041 604 244 10 82 chr9 59884243 59884439 -64191733 - B3A SINE B2 -15 183 2 8 1041 196 269 11 11 chr9 59887402 59887496 -64188676 + (TG)n Simple_repeat Simple_repeat 2 95 0 8 1041 255 324 144 23 chr9 59887499 59887673 -64188499 - B4 SINE B4 0 292 98 8 1041 957 227 31 5 chr9 59887771 59887966 -64188206 - B3 SINE B2 0 216 17 8 1041 564 217 57 32 chr9 59887964 59888121 -64188051 - ORR1E LTR MaLR -175 184 24 8 1041 715 216 55 17 chr9 59888174 59888369 -64187803 - B3 SINE B2 0 216 11 8 1041 535 285 147 23 chr9 59888399 59888658 -64187514 + B4A SINE B4 2 292 0 8 1041 198 0 0 0 chr9 59888798 59888820 -64187352 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1041 394 169 130 0 chr9 59889905 59889982 -64186190 - 5S rRNA rRNA -30 91 5 8 1041 207 0 0 0 chr9 59890079 59890102 -64186070 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 8 1041 3051 32 215 12 chr9 59890119 59890529 -64185643 - MT2_Mm LTR ERVL 0 493 1 8 1041 784 255 10 30 chr9 59891033 59891235 -64184937 + B3A SINE B2 1 198 0 8 1041 862 171 14 7 chr9 59891864 59892011 -64184161 + B1_Mur1 SINE Alu 2 149 0 8 1041 280 323 7 51 chr9 59892600 59892737 -64183435 + L1M5 LINE L1 4518 4648 -1498 8 1041 297 272 133 20 chr9 59892908 59893058 -64183114 + L1M5 LINE L1 4853 5019 -1127 8 1041 36152 36 0 0 chr9 59893306 59898603 -64177569 + L1Md_T LINE L1 196 5589 -297 8 1041 9107 6 0 3 chr9 59898603 59899636 -64176536 + L1Md_T LINE L1 5590 6585 0 8 1042 537 239 92 97 chr9 59899962 59900157 -64176015 - B3A SINE B2 0 195 2 8 1042 743 234 31 71 chr9 59900293 59900518 -64175654 - B3 SINE B2 0 216 1 8 1042 317 226 0 0 chr9 59901302 59901364 -64174808 - B3 SINE B2 -89 127 66 8 1042 221 348 14 0 chr9 59901373 59901442 -64174730 + PB1D10 SINE Alu 41 110 -7 8 1042 283 73 0 0 chr9 59901543 59901584 -64174588 + B3 SINE B2 2 42 -174 8 1042 223 293 0 0 chr9 59902068 59902126 -64174046 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 1042 503 274 94 50 chr9 59902131 59902408 -64173764 - B4A SINE B4 0 292 4 8 1042 936 243 98 12 chr9 59903071 59903317 -64172855 + B4 SINE B4 4 270 -22 8 1042 969 42 21 0 chr9 59903339 59903482 -64172690 + (CA)n Simple_repeat Simple_repeat 2 147 0 8 1042 415 293 41 16 chr9 59903603 59903797 -64172375 + MIR SINE MIR 33 231 -31 8 1042 282 287 244 0 chr9 59903898 59904013 -64172159 + B1F SINE Alu 1 143 -6 8 1042 503 292 114 42 chr9 59904974 59905238 -64170934 + B4A SINE B4 2 284 -8 8 1042 300 118 0 0 chr9 59906837 59906888 -64169284 + B3A SINE B2 1 51 -147 8 1042 771 253 26 74 chr9 59906889 59907239 -64168933 + RLTR15 LTR ERVK 1 333 -26 8 1042 730 207 87 0 chr9 59907260 59907410 -64168762 + B3 SINE B2 54 216 0 8 1042 694 273 199 13 chr9 59907476 59907788 -64168384 + ORR1D2 LTR MaLR 1 370 0 8 1042 246 162 186 29 chr9 59907962 59908032 -64168140 - MTEa LTR MaLR -43 336 256 8 1042 459 251 89 21 chr9 59909450 59909641 -64166531 - L1MC4a LINE L1 -1 7881 7678 8 1042 1143 276 53 41 chr9 59909722 59910134 -64166038 + MTD LTR MaLR 1 417 -2 8 1042 232 340 9 0 chr9 59910199 59910305 -64165867 + MIRc SINE MIR 3 109 -159 8 1042 369 0 0 0 chr9 59910839 59910880 -64165292 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1042 225 0 0 0 chr9 59911412 59911437 -64164735 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 8 1042 226 277 44 44 chr9 59911717 59911853 -64164319 + L1M5 LINE L1 5638 5773 -351 8 1042 661 297 21 0 chr9 59912061 59912253 -64163919 + MER58A DNA MER1_type 4 199 -25 8 1042 255 246 0 30 chr9 59912483 59912550 -64163622 + B4A SINE B4 1 65 -227 8 1042 607 246 57 48 chr9 59914083 59914292 -64161880 + ID_B1 SINE B4 8 218 -6 8 1042 228 233 33 0 chr9 59915636 59915696 -64160476 - MIR SINE MIR -56 152 91 8 1042 694 267 71 95 chr9 59916448 59916532 -64159640 - B4A SINE B4 -2 290 217 8 1042 867 182 104 50 chr9 59916532 59916734 -64159438 - B3 SINE B2 -3 213 1 8 1042 694 267 71 95 chr9 59916734 59916943 -64159229 - B4A SINE B4 -76 216 4 8 1042 4136 43 0 0 chr9 59917265 59917752 -64158420 + L1Md_T LINE L1 6096 6582 0 8 1042 21 36 0 0 chr9 59919228 59919256 -64156916 + AT_rich Low_complexity Low_complexity 1 28 0 8 1042 229 250 51 51 chr9 59920264 59920382 -64155790 + B4A SINE B4 115 232 -60 8 1042 705 236 194 44 chr9 59920570 59920595 -64155577 - B4A SINE B4 0 292 269 8 1042 390 42 0 0 chr9 59920595 59920643 -64155529 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1042 705 236 194 44 chr9 59920643 59920869 -64155303 - B4A SINE B4 -24 268 3 8 1042 8038 77 16 0 chr9 59921119 59922308 -64153864 + L1_Mus4 LINE L1 5427 6633 -3 8 1042 405 0 0 0 chr9 59922351 59922396 -64153776 + (TAA)n Simple_repeat Simple_repeat 2 46 0 8 1042 252 367 94 12 chr9 59922464 59922635 -64153537 - MIRb SINE MIR -70 198 14 8 1042 258 282 13 0 chr9 59922702 59922780 -64153392 + MIRc SINE MIR 74 152 -116 8 1042 728 219 34 83 chr9 59922783 59922987 -64153185 + B3A SINE B2 2 195 -3 8 1042 210 213 80 0 chr9 59922993 59923068 -64153104 + MIR SINE MIR 131 211 -51 8 1042 1159 307 33 50 chr9 59923236 59923781 -64152391 - Lx8 LINE L1 -1 7472 6937 8 1042 225 0 0 0 chr9 59923998 59924023 -64152149 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 1042 351 0 0 0 chr9 59924023 59924061 -64152111 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1042 999 264 8 20 chr9 59924901 59925152 -64151020 + B4A SINE B4 1 248 -44 9 1042 600 14 0 0 chr9 59925180 59925249 -64150923 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1042 388 307 23 35 chr9 59925408 59925580 -64150592 + L1MA6 LINE L1 5899 6068 -232 9 1042 676 258 35 40 chr9 59925593 59925791 -64150381 - B3A SINE B2 0 198 2 9 1042 551 203 16 0 chr9 59925866 59925994 -64150178 + G-rich Low_complexity Low_complexity 3 132 0 9 1042 235 315 107 7 chr9 59925994 59926144 -64150028 + L1MA6 LINE L1 6135 6299 -1 9 1042 1015 216 98 0 chr9 59926176 59926421 -64149751 - ORR1D2 LTR MaLR 0 370 102 9 1042 511 333 61 46 chr9 59926711 59926991 -64149181 - B4A SINE B4 0 292 9 9 1042 288 266 17 60 chr9 59927946 59928062 -64148110 - MIRb SINE MIR -99 169 59 9 1042 393 22 0 0 chr9 59928242 59928288 -64147884 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1042 324 0 0 0 chr9 59928288 59928323 -64147849 + (GA)n Simple_repeat Simple_repeat 1 36 0 9 1042 198 0 0 0 chr9 59928324 59928346 -64147826 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 9 1042 891 277 34 53 chr9 59928366 59928629 -64147543 - B4 SINE B4 -19 273 16 9 1042 820 221 146 23 chr9 59928811 59929164 -64147008 - MTD LTR MaLR -14 405 10 9 1042 246 32 0 0 chr9 59929323 59929354 -64146818 + (CCTTG)n Simple_repeat Simple_repeat 3 33 0 9 1042 537 263 13 38 chr9 59929389 59929547 -64146625 + MER20 DNA MER1_type 7 160 -59 9 1042 711 35 0 0 chr9 59929712 59929798 -64146374 + (TCCCC)n Simple_repeat Simple_repeat 3 88 0 9 1042 321 26 0 0 chr9 59929798 59929836 -64146336 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 9 1042 211 140 23 23 chr9 59929877 59929921 -64146251 - ID4 SINE ID -38 45 2 9 1042 270 278 89 0 chr9 59931066 59931156 -64145016 + ID_B1 SINE B4 107 204 -20 9 1042 634 289 46 35 chr9 59931156 59931439 -64144733 + B4A SINE B4 3 288 -4 9 1042 1119 56 75 0 chr9 59931597 59931757 -64144415 + ORR1A3 LTR MaLR 155 326 0 9 1042 601 214 67 99 chr9 59933030 59933253 -64142919 + B4A SINE B4 2 217 -75 9 1042 830 276 106 8 chr9 59934628 59935004 -64141168 - Lx9 LINE L1 0 7644 7232 9 1042 423 0 0 0 chr9 59935029 59935076 -64141096 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1042 506 200 19 74 chr9 59935122 59935230 -64140942 + B3A SINE B2 1 102 -96 9 1042 287 49 24 0 chr9 59935264 59935305 -64140867 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1042 295 329 83 32 chr9 59935347 59935564 -64140608 + LTR16A LTR ERVL 71 298 -153 9 1042 270 0 0 0 chr9 59936181 59936211 -64139961 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1042 24 0 0 0 chr9 59936239 59936263 -64139909 + AT_rich Low_complexity Low_complexity 1 24 0 9 1042 192 40 0 0 chr9 59936605 59936630 -64139542 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 9 1042 1153 206 9 0 chr9 59936808 59937022 -64139150 + B3 SINE B2 1 216 0 9 1042 198 150 0 0 chr9 59937166 59937206 -64138966 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1042 473 296 120 68 chr9 59938130 59938380 -64137792 - B4 SINE B4 -28 264 2 9 1042 240 35 0 0 chr9 59938574 59938603 -64137569 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 9 1042 664 272 12 24 chr9 59939275 59939441 -64136731 - RSINE1 SINE B4 0 165 2 9 1042 202 340 121 14 chr9 59941197 59941412 -64134760 - L3 LINE CR1 -49 4440 4203 9 1042 297 128 0 0 chr9 59941601 59941648 -64134524 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1042 336 102 0 0 chr9 59941644 59941693 -64134479 + (GGA)n Simple_repeat Simple_repeat 2 50 0 9 1042 202 346 13 0 chr9 59941773 59941851 -64134321 - L3 LINE CR1 -428 4061 3983 9 1042 625 292 86 19 chr9 59942350 59942619 -64133553 + B4A SINE B4 4 290 -2 9 1042 244 196 0 36 chr9 59942650 59942761 -64133411 + (CAGA)n Simple_repeat Simple_repeat 4 110 0 9 1042 357 251 0 0 chr9 59942783 59942933 -64133239 + (CA)n Simple_repeat Simple_repeat 1 150 0 9 1042 405 0 0 0 chr9 59942933 59942978 -64133194 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 1042 357 251 0 0 chr9 59942978 59943002 -64133170 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1042 181 229 0 28 chr9 59945093 59945129 -64131043 + L2c LINE L2 3332 3366 -21 9 1042 224 163 0 104 chr9 59945101 59945149 -64131023 + MIR SINE MIR 220 262 0 9 1042 717 300 39 17 chr9 59945952 59946183 -64129989 - B4A SINE B4 -56 236 1 9 1042 1048 86 14 0 chr9 59946209 59946349 -64129823 + B1_Mus1 SINE Alu 1 142 -6 9 1042 324 0 0 0 chr9 59946351 59946387 -64129785 + (TAA)n Simple_repeat Simple_repeat 2 37 0 9 1042 356 107 0 26 chr9 59946784 59946861 -64129311 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 9 1042 849 334 113 19 chr9 59947951 59948154 -64128018 + L2 LINE L2 1928 2142 -1277 9 1042 225 0 0 0 chr9 59948154 59948179 -64127993 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 9 1042 849 334 113 19 chr9 59948179 59948549 -64127623 + L2 LINE L2 2143 2554 -865 9 1042 195 229 114 57 chr9 59949202 59949290 -64126882 + MIRb SINE MIR 43 135 -133 9 1042 327 266 282 6 chr9 59949305 59949475 -64126697 - L1MB7 LINE L1 -24 6160 5944 9 1042 576 228 6 29 chr9 59949903 59950221 -64125951 + (CATA)n Simple_repeat Simple_repeat 1 310 0 9 1042 272 228 0 17 chr9 59950222 59950280 -64125892 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1042 387 230 0 0 chr9 59950708 59950821 -64125351 + (CA)n Simple_repeat Simple_repeat 1 113 0 9 1042 358 245 10 96 chr9 59951129 59951233 -64124939 + B4 SINE B4 198 292 0 9 1042 184 312 140 18 chr9 59951381 59951495 -64124677 - L2c LINE L2 -228 3159 3032 9 1042 886 251 159 4 chr9 59952681 59952933 -64123239 - B4 SINE B4 -1 291 1 9 1042 1207 153 63 0 chr9 59953479 59953668 -64122504 - B3 SINE B2 -14 202 2 9 1042 714 44 0 0 chr9 59953741 59953831 -64122341 + (CA)n Simple_repeat Simple_repeat 2 91 0 9 1042 456 19 0 0 chr9 59955510 59955563 -64120609 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1042 198 0 0 0 chr9 59956615 59956637 -64119535 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 9 1042 212 204 91 18 chr9 59956829 59956884 -64119288 + MIRc SINE MIR 10 68 -200 9 1042 486 278 39 71 chr9 59957331 59957486 -64118686 - B4 SINE B4 -41 251 102 9 1042 282 79 51 26 chr9 59959018 59959096 -64117076 + (TA)n Simple_repeat Simple_repeat 1 80 0 9 1042 24 67 0 0 chr9 59959128 59959173 -64116999 + AT_rich Low_complexity Low_complexity 1 45 0 9 1042 806 247 46 0 chr9 59959194 59959388 -64116784 - B3 SINE B2 -13 203 1 9 1042 550 139 222 0 chr9 59959423 59959531 -64116641 - B1_Mur4 SINE Alu -9 141 10 9 1042 335 265 59 24 chr9 59959743 59959828 -64116344 + RSINE1 SINE B4 72 159 -6 9 1042 452 292 16 8 chr9 59959844 59959965 -64116207 + MLT1E LTR MaLR 423 544 -109 9 1042 1809 195 47 15 chr9 59960195 59960601 -64115571 + MTD LTR MaLR 1 419 0 9 1042 437 254 149 38 chr9 59960657 59960972 -64115200 + L1M3c LINE L1 1201 1550 -4591 9 1042 743 127 35 18 chr9 59960984 59961153 -64115019 + GA-rich Low_complexity Low_complexity 3 174 0 9 1042 599 162 9 54 chr9 59961397 59961508 -64114664 - B1_Mur1 SINE Alu -5 144 39 9 1042 314 289 64 45 chr9 59961537 59961693 -64114479 - Charlie18a DNA MER1_type -104 238 80 9 1042 969 236 11 0 chr9 59961886 59962077 -64114095 + B3 SINE B2 1 193 -23 9 1042 1013 273 85 32 chr9 59962323 59962728 -64113444 + Lx8 LINE L1 6896 7322 -151 9 1042 543 118 0 0 chr9 59962728 59962813 -64113359 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 9 1042 1013 273 85 32 chr9 59962813 59962899 -64113273 + Lx8 LINE L1 7323 7413 -60 9 1042 258 32 0 0 chr9 59964022 59964053 -64112119 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1042 751 259 156 12 chr9 59964673 59964923 -64111249 + B4 SINE B4 1 286 -6 9 1042 333 68 0 0 chr9 59964980 59965024 -64111148 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1042 369 282 79 74 chr9 59965565 59965768 -64110404 - B4A SINE B4 -4 288 85 9 1042 416 298 55 34 chr9 59965823 59965969 -64110203 - RSINE1 SINE B4 -16 149 1 9 1042 620 276 98 46 chr9 59965998 59966192 -64109980 + B3 SINE B2 1 204 -12 9 1042 274 23 0 44 chr9 59966354 59966399 -64109773 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 9 1042 1054 255 50 23 chr9 59966566 59966827 -64109345 + B4A SINE B4 1 268 -24 9 1042 231 36 0 0 chr9 59966894 59966922 -64109250 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1042 360 369 17 40 chr9 59967888 59968063 -64108109 - MIR3 SINE MIR -4 204 34 9 1042 1207 251 118 15 chr9 59968082 59968421 -64107751 + MTEa LTR MaLR 1 374 -5 9 1042 480 344 16 26 chr9 59968525 59968719 -64107453 + ORR1E LTR MaLR 1 192 -167 9 1042 702 241 24 37 chr9 59969269 59969433 -64106739 + RSINE1 SINE B4 3 164 -1 9 1042 261 139 0 0 chr9 59970202 59970245 -64105927 + (TTG)n Simple_repeat Simple_repeat 2 44 0 9 1042 185 117 49 16 chr9 59970690 59970751 -64105421 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1042 218 81 27 0 chr9 59970773 59970810 -64105362 + (TC)n Simple_repeat Simple_repeat 2 39 0 9 1042 333 0 0 0 chr9 59970810 59970847 -64105325 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1042 295 321 46 52 chr9 59971029 59971203 -64104969 + LTR16C LTR ERVL 202 374 -115 9 1042 781 229 100 11 chr9 59971540 59971730 -64104442 - ID_B1 SINE B4 -16 208 2 9 1042 665 272 10 49 chr9 59973472 59973677 -64102495 - B3A SINE B2 -1 197 1 9 1042 241 274 18 64 chr9 59973969 59974078 -64102094 + MER46C DNA MER2_type 59 162 -176 1 1042 211 367 13 75 chr9 59974186 59974345 -64101827 + L2b LINE L2 3036 3184 -191 1 1042 307 294 3 11 chr9 59974372 59974461 -64101711 + ID4 SINE ID 1 89 -63 1 1042 238 300 98 18 chr9 59974659 59974771 -64101401 + MamRep564 Unknown Unknown 106 226 -131 1 1042 238 297 32 21 chr9 59976330 59976423 -64099749 + MIR3 SINE MIR 86 179 -29 1 1042 270 224 0 118 chr9 59976592 59976668 -64099504 - PB1D10 SINE Alu -50 67 1 1 1042 681 220 7 29 chr9 59976668 59976755 -64099417 - B4A SINE B4 -207 85 2 1 1042 510 326 139 40 chr9 59976835 59977158 -64099014 - ORR1E LTR MaLR -4 355 1 1 1042 289 326 64 70 chr9 59977769 59977995 -64098177 + L2b LINE L2 2975 3198 -228 1 1042 198 0 0 0 chr9 59978146 59978168 -64098004 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1042 257 0 30 0 chr9 59978566 59978599 -64097573 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 1 1042 1492 221 119 3 chr9 59978599 59978944 -64097228 + MTD LTR MaLR 21 405 -14 1 1042 1078 285 35 25 chr9 59978944 59979228 -64096944 - B4 SINE B4 -5 287 1 1 1042 825 253 257 26 chr9 59980070 59980555 -64095617 + L1MA4 LINE L1 5672 6296 -4 1 1042 649 314 72 47 chr9 59980569 59980846 -64095326 + B4 SINE B4 8 291 -1 1 1042 579 246 0 23 chr9 59981335 59981468 -64094704 + B1_Mur1 SINE Alu 1 130 -19 1 1042 394 329 129 60 chr9 59981541 59982023 -64094149 + L1M5 LINE L1 4347 4867 -1279 1 1042 461 162 10 0 chr9 59982189 59982255 -64093917 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1042 978 107 35 0 chr9 59982255 59982424 -64093748 + (TATG)n Simple_repeat Simple_repeat 4 178 0 1 1042 461 162 10 0 chr9 59982424 59982456 -64093716 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1042 300 302 127 21 chr9 59982586 59982823 -64093349 + L1M5 LINE L1 5021 5282 -864 1 1042 339 355 75 25 chr9 59982921 59983242 -64092930 + L1M5 LINE L1 5412 5748 -492 1 1042 1117 210 0 0 chr9 59983244 59983444 -64092728 + B3 SINE B2 1 200 -16 1 1042 814 209 0 0 chr9 59983718 59983857 -64092315 - B1_Mur2 SINE Alu -5 144 6 1 1042 310 370 88 56 chr9 59984422 59984671 -64091501 + L1M5 LINE L1 3859 4115 -2031 1 1042 977 268 98 4 chr9 59984704 59984981 -64091191 + Lx8 LINE L1 7171 7473 0 1 1042 1476 171 82 43 chr9 59984987 59985378 -64090794 + Lx9 LINE L1 7239 7644 0 1 1042 240 59 0 0 chr9 59985423 59985457 -64090715 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1042 430 237 0 20 chr9 59985552 59985651 -64090521 - L1MB7 LINE L1 -72 6112 6016 1 1042 594 226 106 58 chr9 59986033 59986221 -64089951 + B3A SINE B2 2 198 0 1 1042 639 286 33 52 chr9 59990766 59990976 -64085196 - MER58A DNA MER1_type 0 224 19 1 1042 644 311 13 51 chr9 59990923 59991157 -64085015 - B4 SINE B4 -66 226 2 1 1042 762 310 99 8 chr9 59991312 59991676 -64084496 - L1MB4 LINE L1 -10 6170 5774 1 1042 276 355 0 0 chr9 59991708 59991801 -64084371 - L1MB4 LINE L1 -480 5700 5608 1 1042 367 310 38 19 chr9 59991866 59992024 -64084148 - L1MB4 LINE L1 -572 5606 5446 1 1042 314 316 8 0 chr9 59992928 59993045 -64083127 - L1MD3 LINE L1 -89 7906 7789 1 1042 1239 276 88 18 chr9 59993101 59993599 -64082573 - L1MD3 LINE L1 -427 7568 7036 1 1042 369 0 0 0 chr9 59993747 59993788 -64082384 + (CCA)n Simple_repeat Simple_repeat 3 43 0 1 1042 328 261 0 22 chr9 59994011 59994101 -64082071 - PB1D10 SINE Alu -1 116 29 1 1042 195 42 0 0 chr9 59994136 59994160 -64082012 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1042 333 275 21 21 chr9 59994393 59994486 -64081686 + MER33 DNA MER1_type 1 93 -231 1 1042 279 0 0 0 chr9 59995091 59995122 -64081050 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1042 1094 114 57 47 chr9 59995829 59996022 -64080150 + B2_Mm2 SINE B2 1 195 0 1 1042 302 331 87 16 chr9 59996035 59996161 -64080011 + MER5A DNA MER1_type 12 146 -43 1 1042 27 0 0 0 chr9 59996274 59996301 -64079871 + AT_rich Low_complexity Low_complexity 1 27 0 1 1042 325 336 128 63 chr9 59996313 59996742 -64079430 + L1M5 LINE L1 4763 5219 -927 1 1042 215 350 50 59 chr9 59996772 59996929 -64079243 - L2a LINE L2 -40 3386 3177 1 1042 323 250 130 0 chr9 59997836 59997944 -64078228 + L1MA7 LINE L1 6170 6291 0 1 1042 1554 183 153 3 chr9 59998018 59998358 -64077814 + MTD LTR MaLR 1 391 -28 1 1042 1010 206 29 5 chr9 59998383 59998588 -64077584 - B3 SINE B2 -6 210 1 1 1042 263 116 47 0 chr9 59998589 59998632 -64077540 + ORR1D1 LTR MaLR 330 374 0 1 1042 675 302 72 32 chr9 59998669 59998946 -64077226 + MLT1D LTR MaLR 100 387 -118 1 1042 200 111 28 0 chr9 59998948 59998984 -64077188 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1 1042 494 313 7 37 chr9 59998999 59999135 -64077037 - RSINE1 SINE B4 -2 163 32 1 1042 673 280 102 16 chr9 59999161 59999412 -64076760 + L1MB8 LINE L1 5839 6107 -71 1 1042 252 0 0 0 chr9 59999412 59999440 -64076732 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1042 673 280 102 16 chr9 59999440 59999493 -64076679 + L1MB8 LINE L1 6108 6169 -9 1 1042 1950 220 32 23 chr9 60000237 60000670 -64075502 + Lx6 LINE L1 7024 7460 0 1 1042 667 257 87 99 chr9 60001526 60001855 -64074317 - MTE2a LTR MaLR -82 337 1 2 1042 184 30 0 57 chr9 60002430 60002465 -64073707 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1042 858 273 24 14 chr9 60002465 60002677 -64073495 - B4 SINE B4 -69 223 10 4 1042 313 308 57 16 chr9 60002931 60003053 -64073119 - MIR SINE MIR -122 140 14 5 1042 286 283 83 0 chr9 60003051 60003171 -64073001 + L2 LINE L2 2629 2758 -661 6 1042 2287 261 79 39 chr9 60003265 60004058 -64072114 + Lx8 LINE L1 6647 7471 -2 7 1042 274 178 185 65 chr9 60004075 60004183 -64071989 + Lx8 LINE L1 7353 7473 0 8 1042 291 396 90 0 chr9 60005929 60006151 -64070021 - MLT1J1 LTR MaLR -3 441 200 9 1042 928 122 7 45 chr9 60007046 60007201 -64068971 + ORR1D1 LTR MaLR 1 149 -225 1 1042 388 167 15 0 chr9 60007204 60007270 -64068902 + ORR1D1 LTR MaLR 308 374 0 1 1042 812 229 112 19 chr9 60007384 60007589 -64068583 + ID_B1 SINE B4 1 224 0 1 1042 258 267 0 0 chr9 60007648 60007738 -64068434 + GA-rich Low_complexity Low_complexity 2 91 0 1 1042 457 285 473 8 chr9 60008028 60008287 -64067885 - MLT1A1 LTR MaLR -4 404 25 1 1042 774 278 14 112 chr9 60009388 60009464 -64066708 - B4 SINE B4 -32 260 205 1 1042 504 236 98 46 chr9 60009464 60009637 -64066535 - B3A SINE B2 -16 182 1 1 1042 774 278 14 112 chr9 60009637 60009847 -64066325 - B4 SINE B4 -88 204 2 1 1042 423 269 50 19 chr9 60010100 60010259 -64065913 + MIR SINE MIR 43 206 -56 1 1042 596 94 71 20 chr9 60010261 60010359 -64065813 + B1_Mur4 SINE Alu 48 150 0 1 1042 455 301 44 7 chr9 60010382 60010519 -64065653 - B1F1 SINE Alu -7 142 1 1 1042 2947 145 83 32 chr9 60010694 60011251 -64064921 - RMER4B LTR ERVK 0 585 1 1 1042 319 271 40 54 chr9 60011276 60011424 -64064748 - MER117 DNA MER1_type -30 167 22 2 1042 336 237 204 25 chr9 60012238 60012368 -64063804 + MLT1C LTR MaLR 28 172 -333 2 1042 1062 260 50 0 chr9 60012383 60012625 -64063547 - B4A SINE B4 0 292 39 2 1042 435 297 15 92 chr9 60012690 60012820 -64063352 - B4A SINE B4 -170 122 3 2 1042 411 270 26 18 chr9 60013156 60013269 -64062903 + PB1D10 SINE Alu 3 116 -1 2 1042 1263 254 52 23 chr9 60013910 60014253 -64061919 + ORR1E LTR MaLR 3 355 -4 2 1042 377 284 39 168 chr9 60015385 60015539 -64060633 - ORR1E LTR MaLR -1 358 207 2 1042 699 99 0 0 chr9 60015539 60015640 -64060532 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 2 1042 377 284 39 168 chr9 60015640 60015896 -64060276 - ORR1E LTR MaLR -153 206 1 2 1042 1962 151 14 135 chr9 60016309 60016739 -64059433 + ORR1C1 LTR MaLR 1 378 0 2 1042 1912 136 66 66 chr9 60017498 60017876 -64058296 - ORR1C1 LTR MaLR 0 378 1 2 1042 331 228 86 38 chr9 60017939 60018044 -64058128 + RMER10A LTR ERVL 318 427 -15 3 1042 238 299 15 15 chr9 60018148 60018216 -64057956 - B4A SINE B4 -1 291 224 3 1042 754 243 124 0 chr9 60018234 60018419 -64057753 - B3 SINE B2 -7 209 2 3 1042 318 89 11 53 chr9 60018430 60018525 -64057647 + T-rich Low_complexity Low_complexity 5 95 0 3 1042 408 319 153 41 chr9 60018531 60018658 -64057514 - B4 SINE B4 -70 222 77 3 1042 180 97 0 0 chr9 60018658 60018689 -64057483 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1042 408 319 153 41 chr9 60018689 60018757 -64057415 - B4 SINE B4 -216 76 5 3 1042 210 375 23 0 chr9 60018760 60018848 -64057324 + L2b LINE L2 3279 3368 -7 3 1042 290 339 138 12 chr9 60018848 60019015 -64057157 + MIRb SINE MIR 1 188 -80 3 1042 739 286 126 24 chr9 60019696 60019950 -64056222 + B4 SINE B4 1 280 -12 3 1042 495 0 0 0 chr9 60019951 60020006 -64056166 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1042 398 332 47 96 chr9 60021207 60021636 -64054536 + L1ME4a LINE L1 5533 5940 -184 3 1042 225 264 27 14 chr9 60021744 60021817 -64054355 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1042 764 291 64 23 chr9 60022113 60022331 -64053841 - B4A SINE B4 -52 240 14 4 1042 486 220 40 0 chr9 60022344 60022444 -64053728 - ID_B1 SINE B4 -119 105 2 4 1042 3954 73 8 11 chr9 60022485 60023013 -64053159 + L1_Mus4 LINE L1 6109 6634 -2 4 1042 324 301 16 112 chr9 60023481 60023668 -64052504 - L1ME1 LINE L1 -1 6163 5995 4 1042 338 222 11 0 chr9 60023737 60023827 -64052345 + CT-rich Low_complexity Low_complexity 3 93 0 4 1042 709 216 45 35 chr9 60023840 60024041 -64052131 - B3 SINE B2 -11 205 3 4 1042 348 277 234 75 chr9 60024046 60024589 -64051583 - L1ME1 LINE L1 -297 5882 5254 4 1042 225 105 158 0 chr9 60024874 60024912 -64051260 - ORR1E LTR MaLR -12 347 304 4 1042 220 324 55 45 chr9 60025237 60025347 -64050825 + L2b LINE L2 3261 3421 -5 4 1042 592 228 185 22 chr9 60025734 60025918 -64050254 + ID_B1 SINE B4 2 215 -9 4 1042 690 328 24 12 chr9 60026064 60026314 -64049858 + MLT1A0 LTR MaLR 113 365 0 5 1042 663 251 58 16 chr9 60026314 60026556 -64049616 + L1MB8 LINE L1 5719 5981 -197 5 1042 955 316 62 52 chr9 60026572 60026973 -64049199 - MTD LTR MaLR -14 405 1 5 1042 306 0 0 0 chr9 60027044 60027078 -64049094 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1042 361 318 0 0 chr9 60027080 60027165 -64049007 + (CTAGGG)n Simple_repeat Simple_repeat 6 90 0 5 1042 603 246 70 70 chr9 60027357 60027558 -64048614 + MTE2a LTR MaLR 1 201 -178 5 1042 440 350 58 43 chr9 60028362 60028666 -64047506 + B4 SINE B4 2 281 -11 5 1042 556 270 24 59 chr9 60028952 60029121 -64047051 + RSINE1 SINE B4 3 165 0 5 1042 261 0 0 0 chr9 60029131 60029160 -64047012 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 5 1042 990 236 5 5 chr9 60029757 60029974 -64046198 - ID_B1 SINE B4 -5 219 3 5 1042 216 0 0 0 chr9 60030101 60030125 -64046047 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1042 237 299 15 0 chr9 60030771 60030838 -64045334 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 130 559 291 87 36 chr9 60030838 60031113 -64045059 - B4A SINE B4 -3 289 1 6 1043 320 320 100 84 chr9 60031207 60031446 -64044726 - B4A SINE B4 -49 243 1 6 1043 180 208 36 54 chr9 60032028 60032084 -64044088 - L4 LINE RTE -1101 928 874 6 1043 361 343 57 7 chr9 60032308 60032449 -64043723 - LTR40c LTR ERVL -15 447 300 6 1043 237 83 0 0 chr9 60032482 60032518 -64043654 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1043 1144 243 11 11 chr9 60032527 60032806 -64043366 - B4A SINE B4 -11 281 3 6 1043 651 260 101 0 chr9 60032806 60032975 -64043197 + RMER30 DNA MER1_type 17 202 0 6 1043 234 337 12 0 chr9 60032980 60033066 -64043106 - LTR40c LTR ERVL -211 254 168 6 1043 554 310 29 33 chr9 60033095 60033305 -64042867 + B4A SINE B4 29 237 -55 6 1043 366 321 52 0 chr9 60033420 60033554 -64042618 - LTR40c LTR ERVL -324 141 1 6 1043 570 238 124 70 chr9 60033755 60033940 -64042232 + B3A SINE B2 4 198 0 7 1043 1009 201 63 0 chr9 60033969 60034158 -64042014 + B3 SINE B2 8 208 -8 7 1043 21 0 0 0 chr9 60034159 60034180 -64041992 + AT_rich Low_complexity Low_complexity 1 21 0 7 1043 424 316 39 26 chr9 60034185 60034341 -64041831 + B4A SINE B4 1 158 -134 7 1043 217 180 20 0 chr9 60034716 60034766 -64041406 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 7 1043 642 263 12 131 chr9 60035023 60035268 -64040904 + ID_B1 SINE B4 2 217 -7 7 1043 604 314 102 8 chr9 60036274 60036666 -64039506 + L1MD3 LINE L1 7440 7868 -127 7 1043 870 312 49 38 chr9 60036964 60037227 -64038945 + B4 SINE B4 27 292 0 7 1043 250 311 36 36 chr9 60037200 60037337 -64038835 - RLTR22_Mur LTR ERVK -388 1460 1324 7 1043 298 100 119 104 chr9 60037846 60037913 -64038259 + ID4_ SINE ID 5 72 -11 7 1043 192 152 0 0 chr9 60038748 60038781 -64037391 + (CATG)n Simple_repeat Simple_repeat 3 35 0 8 1043 572 164 187 27 chr9 60038883 60039033 -64037139 + Lx5 LINE L1 6875 7048 -2 8 1043 722 289 6 19 chr9 60039093 60039255 -64036917 - RSINE1 SINE B4 -4 161 2 8 1043 207 0 0 0 chr9 60039284 60039307 -64036865 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1043 531 0 0 0 chr9 60039341 60039400 -64036772 + (TC)n Simple_repeat Simple_repeat 1 59 0 8 1043 686 154 22 89 chr9 60040890 60041025 -64035147 + RSINE1 SINE B4 2 127 -38 8 1043 618 202 12 0 chr9 60041039 60041387 -64034785 + (TG)n Simple_repeat Simple_repeat 1 352 0 8 1043 201 237 0 0 chr9 60041419 60041478 -64034694 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1043 274 247 68 0 chr9 60041502 60041575 -64034597 + ID4_ SINE ID 2 79 -4 8 1043 690 316 43 18 chr9 60041614 60041894 -64034278 + B4 SINE B4 2 288 -4 8 1043 406 293 21 108 chr9 60043289 60043405 -64032767 - L1MA4 LINE L1 -370 5930 5825 8 1043 745 230 31 63 chr9 60043405 60043628 -64032544 - B3 SINE B2 0 216 1 9 1043 406 293 21 108 chr9 60043628 60043752 -64032420 - L1MA4 LINE L1 -476 5824 5711 8 1043 287 240 213 8 chr9 60044127 60044249 -64031923 - ID_B1 SINE B4 -1 223 77 9 1043 621 265 133 43 chr9 60045627 60045883 -64030289 - B4 SINE B4 -12 280 2 9 1043 635 222 138 16 chr9 60047042 60047230 -64028942 + ID_B1 SINE B4 2 212 -12 9 1043 989 136 26 0 chr9 60047243 60047397 -64028775 - URR1A DNA MER1_type -24 202 45 9 1043 1124 239 36 18 chr9 60047880 60048161 -64028011 + B4 SINE B4 3 288 -4 9 1043 3196 49 3 0 chr9 60048568 60048953 -64027219 - L1_Mus1 LINE L1 -1 6566 6181 9 1043 650 294 68 26 chr9 60049433 60049625 -64026547 + B4 SINE B4 91 290 -2 9 1043 375 78 0 0 chr9 60049652 60049703 -64026469 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1043 497 332 13 101 chr9 60049943 60050171 -64026001 - MER58A DNA MER1_type -12 212 5 9 1043 337 241 230 14 chr9 60050359 60050498 -64025674 + L1ME4a LINE L1 5956 6124 0 1 1043 21 0 0 0 chr9 60050651 60050672 -64025500 + AT_rich Low_complexity Low_complexity 1 21 0 1 1043 213 39 0 0 chr9 60050672 60050698 -64025474 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1043 861 228 23 12 chr9 60050699 60050872 -64025300 - B3A SINE B2 -23 175 1 1 1043 305 297 19 19 chr9 60051084 60051204 -64024968 + L1M7 LINE L1 1641 1768 -4543 1 1043 558 370 118 24 chr9 60051251 60051921 -64024251 + L1M7 LINE L1 3144 3876 -2338 1 1043 239 226 88 51 chr9 60051921 60052136 -64024036 + RMER17D LTR ERVK 239 461 -428 1 1043 532 204 142 0 chr9 60052147 60052260 -64023912 - B1_Mur2 SINE Alu -10 139 11 1 1043 224 211 14 0 chr9 60052715 60052786 -64023386 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1043 441 0 0 0 chr9 60053349 60053398 -64022774 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1043 578 317 41 0 chr9 60053404 60053549 -64022623 + RSINE1 SINE B4 4 154 -11 1 1043 441 90 0 0 chr9 60053565 60053632 -64022540 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1043 195 302 192 48 chr9 60053825 60053950 -64022222 - MIRb SINE MIR -71 197 55 1 1043 898 254 75 130 chr9 60054099 60054498 -64021674 + MTE2a LTR MaLR 1 377 -2 1 1043 22 35 0 0 chr9 60054635 60054664 -64021508 + AT_rich Low_complexity Low_complexity 1 29 0 1 1043 429 36 0 0 chr9 60054908 60054963 -64021209 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1043 658 265 151 29 chr9 60055008 60055253 -64020919 - B4 SINE B4 -16 276 2 1 1043 289 303 22 0 chr9 60056219 60056308 -64019864 + MIRc SINE MIR 114 204 -64 1 1043 2030 282 62 24 chr9 60056403 60057076 -64019096 + Lx8 LINE L1 6584 7282 -191 1 1043 396 0 0 0 chr9 60057099 60057143 -64019029 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1043 235 333 0 11 chr9 60057616 60057704 -64018468 - MTEb LTR MaLR -14 365 279 1 1043 501 235 163 105 chr9 60057962 60058171 -64018001 + B4 SINE B4 9 229 -63 1 1043 351 0 0 0 chr9 60058183 60058222 -64017950 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1043 435 38 0 0 chr9 60058700 60058753 -64017419 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1043 1621 139 31 145 chr9 60059449 60059615 -64016557 + ORR1D1 LTR MaLR 1 166 -208 1 1043 636 14 0 0 chr9 60059615 60059688 -64016484 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1043 207 0 0 0 chr9 60059688 60059710 -64016462 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1043 1621 144 34 138 chr9 60059710 60059943 -64016229 + ORR1D1 LTR MaLR 167 342 -32 1 1043 603 289 19 126 chr9 60060028 60060242 -64015930 + B3A SINE B2 2 192 -6 1 1043 23 92 0 0 chr9 60060357 60060422 -64015750 + AT_rich Low_complexity Low_complexity 1 65 0 1 1043 495 167 0 0 chr9 60061780 60061870 -64014302 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 1043 2377 171 61 52 chr9 60061949 60062268 -64013904 + RLTR12B LTR ERVK 1 313 -215 1 1043 429 20 0 0 chr9 60062268 60062318 -64013854 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1043 2377 171 61 52 chr9 60062318 60062503 -64013669 + RLTR12B LTR ERVK 314 510 -18 1 1043 1651 256 14 8 chr9 60062511 60062881 -64013291 + MTE2b LTR MaLR 6 377 -2 1 1043 966 251 68 10 chr9 60063261 60063466 -64012706 - B4 SINE B4 -74 218 2 1 1043 4515 150 102 67 chr9 60063468 60064334 -64011838 + RMER19B LTR ERVK 1 896 -6 1 1043 324 0 0 0 chr9 60065155 60065191 -64010981 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1043 244 289 66 0 chr9 60065681 60065757 -64010415 + RSINE1 SINE B4 11 91 -74 1 1043 360 0 0 0 chr9 60065796 60065836 -64010336 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1043 204 242 46 46 chr9 60066056 60066121 -64010051 - MIRb SINE MIR -79 189 125 1 1043 270 239 214 26 chr9 60067354 60067471 -64008701 - MIRb SINE MIR -74 194 57 1 1043 249 300 44 11 chr9 60067988 60068079 -64008093 + MIRb SINE MIR 36 129 -139 1 1043 227 376 0 45 chr9 60068223 60068312 -64007860 - L2b LINE L2 -5 3370 3286 1 1043 687 251 78 10 chr9 60068699 60068904 -64007268 + ID_B1 SINE B4 1 219 -5 1 1043 493 306 40 30 chr9 60069203 60069402 -64006770 + MLT1J LTR MaLR 9 209 -303 1 1043 306 275 0 24 chr9 60069407 60069489 -64006683 - ID4_ SINE ID -3 80 1 1 1043 601 282 18 12 chr9 60069519 60069684 -64006488 - B3A SINE B2 -20 178 13 1 1043 378 304 0 11 chr9 60069958 60070051 -64006121 + MER34 LTR ERV1 5 96 -446 1 1043 334 271 48 66 chr9 60071147 60071210 -64004962 - B4A SINE B4 0 292 232 1 1043 1114 263 30 0 chr9 60071210 60071476 -64004696 - B4A SINE B4 -18 274 1 1 1043 334 271 48 66 chr9 60071476 60071578 -64004594 - B4A SINE B4 -61 231 130 1 1043 281 254 0 17 chr9 60071614 60071674 -64004498 - B4A SINE B4 -232 60 2 1 1043 462 242 329 0 chr9 60071706 60071867 -64004305 + B3 SINE B2 1 214 -2 1 1043 494 296 0 9 chr9 60072708 60072824 -64003348 + PB1D10 SINE Alu 1 115 -2 1 1043 201 279 64 85 chr9 60072844 60072938 -64003234 + L3 LINE CR1 917 1008 -3481 1 1043 1442 308 91 64 chr9 60074005 60074955 -64001217 + L3 LINE CR1 3322 4296 -193 1 1043 415 277 27 74 chr9 60074957 60075105 -64001067 + B1F SINE Alu 1 141 -8 1 1043 732 279 118 4 chr9 60075277 60075522 -64000650 + B4 SINE B4 2 274 -18 1 1043 303 28 0 0 chr9 60075578 60075614 -64000558 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1043 244 300 120 67 chr9 60076207 60076357 -63999815 + ORR1E LTR MaLR 20 177 -182 1 1043 207 0 0 0 chr9 60076431 60076454 -63999718 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1043 592 266 15 61 chr9 60076505 60076701 -63999471 - B4A SINE B4 -105 187 1 1 1043 189 0 0 0 chr9 60077968 60077989 -63998183 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1043 665 210 89 22 chr9 60078042 60078222 -63997950 + B3A SINE B2 3 194 -4 1 1043 481 288 0 94 chr9 60078633 60078813 -63997359 + RSINE1 SINE B4 3 165 0 1 1043 390 255 0 113 chr9 60079693 60079860 -63996312 - PB1D9 SINE Alu 0 149 1 1 1043 259 267 9 129 chr9 60079764 60079880 -63996292 - B4 SINE B4 -123 169 68 1 1043 603 250 297 0 chr9 60080648 60080914 -63995258 + MTEa LTR MaLR 34 377 -2 1 1043 424 240 39 135 chr9 60080914 60081042 -63995130 + MT2B2 LTR ERVL 154 264 -320 1 1043 1037 73 0 0 chr9 60080941 60081077 -63995095 + B1_Mus2 SINE Alu 12 147 0 1 1043 1836 149 39 27 chr9 60081256 60081600 -63994572 + MTC LTR MaLR 6 332 -75 1 1043 363 23 0 0 chr9 60081952 60081996 -63994176 + (CAGAGA)n Simple_repeat Simple_repeat 1 44 0 1 1043 567 303 68 50 chr9 60082619 60082838 -63993334 - B4A SINE B4 -68 224 2 1 1043 189 170 18 70 chr9 60082917 60082974 -63993198 - L3 LINE CR1 -2441 2048 1995 1 1043 857 221 106 15 chr9 60083107 60083305 -63992867 - B3 SINE B2 0 216 1 1 1043 617 199 0 7 chr9 60084622 60084759 -63991413 + CT-rich Low_complexity Low_complexity 3 138 0 1 1043 1179 107 3 0 chr9 60084759 60085068 -63991104 + (TCC)n Simple_repeat Simple_repeat 1 310 0 1 1043 599 238 126 26 chr9 60085073 60085263 -63990909 - ID_B1 SINE B4 -12 212 4 1 1043 1142 224 113 24 chr9 60086093 60086470 -63989702 + MTD LTR MaLR 1 403 -16 1 1043 415 292 0 0 chr9 60086589 60086678 -63989494 + B3 SINE B2 28 116 -100 1 1043 482 218 55 0 chr9 60086717 60086827 -63989345 + B3 SINE B2 100 215 -1 1 1043 1162 103 158 10 chr9 60087050 60087246 -63988926 - URR1B DNA MER1_type 0 225 1 1 1043 2424 92 3 0 chr9 60087707 60088033 -63988139 - ORR1A2 LTR MaLR 0 327 1 1 1043 1092 179 61 5 chr9 60088570 60088783 -63987389 - URR1B DNA MER1_type 0 225 1 1 1043 355 127 0 40 chr9 60089219 60089293 -63986879 + G-rich Low_complexity Low_complexity 4 74 0 1 1043 238 307 33 66 chr9 60089956 60090078 -63986094 + MT2B LTR ERVL 124 241 -360 1 1043 497 255 9 0 chr9 60090001 60090107 -63986065 + PB1D10 SINE Alu 6 112 -5 1 1043 900 135 34 74 chr9 60090389 60090565 -63985607 - RLTR20B3 LTR ERVK 0 577 409 1 1043 363 154 31 0 chr9 60090586 60090651 -63985521 - RLTR20B3 LTR ERVK -510 67 1 1 1043 879 208 76 19 chr9 60090871 60091082 -63985090 - ID_B1 SINE B4 0 224 2 1 1043 214 26 25 50 chr9 60091435 60091475 -63984697 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1043 324 242 50 40 chr9 60092233 60092332 -63983840 - MIRb SINE MIR -58 210 111 1 1043 719 272 0 44 chr9 60093270 60093451 -63982721 + B4 SINE B4 3 175 -117 1 1043 729 249 65 69 chr9 60093550 60093766 -63982406 + B3 SINE B2 1 215 -1 1 1043 324 255 53 0 chr9 60094065 60094159 -63982013 + PB1D7 SINE Alu 1 99 -21 1 1043 278 69 21 103 chr9 60094218 60094315 -63981857 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 1 1043 363 261 80 48 chr9 60094644 60094769 -63981403 - B1F SINE Alu -20 129 1 1 1043 258 191 0 0 chr9 60095263 60095305 -63980867 + L1MC LINE L1 5434 5475 -2407 1 1043 385 268 106 84 chr9 60095430 60095573 -63980599 - B3A SINE B2 -15 183 39 1 1043 483 33 0 0 chr9 60095573 60095634 -63980538 + (CAGG)n Simple_repeat Simple_repeat 2 62 0 1 1043 385 268 106 84 chr9 60095634 60095669 -63980503 - B3A SINE B2 -160 38 2 1 1043 251 0 59 0 chr9 60095764 60095798 -63980374 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 1 1043 525 71 0 0 chr9 60095796 60095866 -63980306 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 1043 416 294 102 60 chr9 60097273 60097508 -63978664 - 7SK RNA RNA -55 276 32 1 1043 342 80 0 0 chr9 60097748 60097798 -63978374 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1043 500 216 90 0 chr9 60098064 60098175 -63977997 + RSINE1 SINE B4 5 125 -40 1 1043 369 0 0 0 chr9 60098210 60098251 -63977921 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1043 694 292 11 22 chr9 60098323 60098505 -63977667 + B4A SINE B4 99 278 -14 1 1043 414 0 0 0 chr9 60098508 60098554 -63977618 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1043 572 276 88 27 chr9 60098947 60099208 -63976964 + B4A SINE B4 1 277 -15 2 1043 370 265 78 45 chr9 60100747 60100901 -63975271 - L1MB8 LINE L1 -76 6102 5944 2 1043 450 242 20 0 chr9 60101174 60101273 -63974899 + ID_B1 SINE B4 4 104 -120 2 1043 1538 216 64 35 chr9 60101304 60101679 -63974493 + MTD LTR MaLR 34 419 0 2 1043 235 200 185 0 chr9 60101679 60101728 -63974444 + B1F SINE Alu 89 149 0 2 1043 228 143 0 0 chr9 60101767 60101809 -63974363 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 2 1043 782 274 128 39 chr9 60101824 60102105 -63974067 + MTEa LTR MaLR 67 372 -7 2 1043 212 260 80 0 chr9 60102176 60102226 -63973946 + MIRm SINE MIR 218 271 -5 2 1043 537 317 96 0 chr9 60102858 60103025 -63973147 + B4A SINE B4 106 288 -4 2 1043 549 42 0 0 chr9 60103027 60103099 -63973073 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1043 689 191 84 0 chr9 60103402 60103533 -63972639 - B1_Mur3 SINE Alu -7 142 1 2 1043 279 216 101 20 chr9 60103549 60103648 -63972524 + L1M4 LINE L1 2328 2434 -3712 2 1043 745 304 59 80 chr9 60103735 60103793 -63972379 + MTE2a LTR MaLR 4 54 -365 2 1043 5023 75 123 15 chr9 60103793 60104538 -63971634 + L1_Mus3 LINE L1 5812 6637 -1 2 1043 926 302 41 64 chr9 60104538 60104904 -63971268 + MTE2a LTR MaLR 41 419 0 2 1043 355 242 50 97 chr9 60105055 60105191 -63970981 - MLT1A0 LTR MaLR -335 132 1 2 1043 647 266 42 13 chr9 60105193 60105429 -63970743 + L1MB8 LINE L1 5706 5948 -230 2 1043 1246 80 23 0 chr9 60105582 60105758 -63970414 - B2_Mm1t SINE B2 -4 189 10 2 1043 651 339 96 36 chr9 60105858 60106264 -63969908 - LTR40c LTR ERVL -26 436 7 2 1043 352 252 171 15 chr9 60106267 60106472 -63969700 + HAL1 LINE L1 1369 1605 -902 2 1043 265 308 192 0 chr9 60106511 60106615 -63969557 + HAL1 LINE L1 1664 1787 -720 2 1043 266 253 37 37 chr9 60106654 60106736 -63969436 + B4A SINE B4 86 167 -125 2 1043 511 159 56 11 chr9 60106674 60106763 -63969409 + PB1D10 SINE Alu 18 110 -7 2 1043 706 200 7 28 chr9 60108239 60108383 -63967789 - RMER1C Other Other -1 1341 1201 2 1043 477 192 8 16 chr9 60108383 60108510 -63967662 + GA-rich Low_complexity Low_complexity 1 126 0 2 1043 550 146 50 40 chr9 60108510 60108610 -63967562 - RMER1C Other Other -127 1215 1115 2 1043 308 152 0 0 chr9 60108751 60108797 -63967375 - ID_B1 SINE B4 -8 216 171 2 1043 1923 219 18 15 chr9 60108827 60109221 -63966951 + MTD LTR MaLR 25 419 0 2 1043 581 248 105 26 chr9 60109221 60109371 -63966801 - ID_B1 SINE B4 -57 167 6 2 1043 250 333 86 62 chr9 60109395 60109523 -63966649 - MIRm SINE MIR -137 139 2 2 1043 207 416 33 13 chr9 60110378 60110529 -63965643 + L2c LINE L2 3005 3158 -229 2 1043 454 303 104 56 chr9 60110851 60111120 -63965052 + B4 SINE B4 1 282 -10 2 1043 2033 214 14 35 chr9 60111658 60112085 -63964087 - MTD LTR MaLR -1 418 1 2 1043 208 236 0 35 chr9 60112086 60112143 -63964029 + G-rich Low_complexity Low_complexity 2 56 0 2 1043 189 226 24 12 chr9 60112157 60112242 -63963930 + GA-rich Low_complexity Low_complexity 2 87 0 2 1043 315 290 28 21 chr9 60113270 60113411 -63962761 + (TATATG)n Simple_repeat Simple_repeat 3 144 0 2 1043 414 328 78 28 chr9 60113486 60113665 -63962507 - B4A SINE B4 -102 190 3 2 1043 657 282 28 28 chr9 60113779 60113961 -63962211 + B3A SINE B2 1 182 -16 2 1043 359 224 23 23 chr9 60113979 60113991 -63962181 + MT2B LTR ERVL 154 165 -436 2 1043 480 193 80 35 chr9 60113991 60114104 -63962068 + PB1D9 SINE Alu 2 119 -1 2 1043 204 40 0 0 chr9 60114287 60114312 -63961860 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1043 235 333 58 0 chr9 60115465 60115552 -63960620 + B4A SINE B4 1 92 -200 2 1043 254 316 13 13 chr9 60115560 60115637 -63960535 + B4A SINE B4 215 291 -1 2 1043 333 294 113 40 chr9 60115686 60115863 -63960309 + MIRb SINE MIR 53 242 -26 2 1043 426 228 0 0 chr9 60115911 60116012 -63960160 + (CCTG)n Simple_repeat Simple_repeat 3 103 0 2 1043 640 282 19 0 chr9 60116535 60116691 -63959481 - RSINE1 SINE B4 -4 161 3 2 1043 349 260 90 0 chr9 60116695 60116795 -63959377 - PB1D10 SINE Alu -1 116 8 2 1043 976 233 230 13 chr9 60116826 60117130 -63959042 + ORR1D2 LTR MaLR 1 370 0 2 1043 410 169 11 0 chr9 60117229 60117318 -63958854 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 1043 752 175 0 0 chr9 60118023 60118146 -63958026 + MTE2b LTR MaLR 58 180 -199 2 1043 384 152 15 15 chr9 60118146 60118213 -63957959 + B2_Mm2 SINE B2 1 67 -128 2 1043 1255 14 0 0 chr9 60118249 60118387 -63957785 - B1_Mus2 SINE Alu -9 138 1 2 1043 735 213 41 126 chr9 60118516 60118660 -63957512 + MTE2b LTR MaLR 162 300 -79 2 1043 180 0 0 0 chr9 60118660 60118680 -63957492 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1043 735 188 38 165 chr9 60118680 60118815 -63957357 + MTE2b LTR MaLR 251 374 0 2 1043 728 260 234 10 chr9 60118815 60118984 -63957188 + L1MB2 LINE L1 5502 5683 -488 2 1043 399 21 0 0 chr9 60118984 60119032 -63957140 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1043 728 260 234 10 chr9 60119032 60119247 -63956925 + L1MB2 LINE L1 5684 5971 -200 2 1043 803 263 84 81 chr9 60119280 60119565 -63956607 - B4A SINE B4 -6 286 1 2 1043 352 286 51 29 chr9 60119567 60119704 -63956468 + L1MB2 LINE L1 6006 6145 -26 2 1043 426 102 0 0 chr9 60119751 60119810 -63956362 - URR1B DNA MER1_type 0 225 167 2 1043 3312 156 39 30 chr9 60119903 60120469 -63955703 + RLTR17 LTR ERVK 98 671 -21 2 1043 1241 61 0 0 chr9 60120469 60120616 -63955556 - B1_Mus1 SINE Alu 0 148 2 2 1043 3312 156 39 30 chr9 60120616 60120639 -63955533 + RLTR17 LTR ERVK 672 692 0 2 1043 1182 148 21 11 chr9 60120639 60120811 -63955361 - URR1B DNA MER1_type -52 173 1 2 1043 843 270 113 28 chr9 60121759 60122113 -63954059 - Lx8 LINE L1 -2 7471 7088 2 1043 563 298 6 0 chr9 60122096 60122257 -63953915 + Lx8 LINE L1 6333 6494 -979 2 1043 2408 141 35 17 chr9 60122335 60122740 -63953432 + MTC LTR MaLR 1 412 -9 2 1043 543 315 20 7 chr9 60122743 60122893 -63953279 - B4 SINE B4 -54 238 87 2 1043 313 266 96 88 chr9 60123094 60123333 -63952839 + RMER17C LTR ERVK 162 402 -8 2 1043 270 73 0 0 chr9 60124049 60124090 -63952082 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1043 233 224 0 20 chr9 60125056 60125106 -63951066 + CT-rich Low_complexity Low_complexity 1 49 0 2 1043 670 285 62 21 chr9 60125422 60125624 -63950548 - B3A SINE B2 -1 194 1 2 1043 674 238 0 58 chr9 60125657 60125831 -63950341 - RSINE1 SINE B4 0 165 2 2 1043 1212 68 0 0 chr9 60127101 60127248 -63948924 + B1_Mus2 SINE Alu 1 147 0 2 1043 198 0 0 0 chr9 60127248 60127270 -63948902 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1043 200 231 39 0 chr9 60127273 60127325 -63948847 - L2c LINE L2 -222 3165 3112 2 1043 492 261 18 54 chr9 60127544 60127710 -63948462 - RSINE1 SINE B4 -4 161 2 2 1043 932 88 0 7 chr9 60128102 60128239 -63947933 + (TTTC)n Simple_repeat Simple_repeat 3 138 0 2 1043 319 184 119 95 chr9 60128241 60128325 -63947847 - B1_Mur4 SINE Alu -6 144 59 2 1043 437 0 19 0 chr9 60128537 60128590 -63947582 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1043 584 269 211 16 chr9 60128716 60128901 -63947271 - B4 SINE B4 -69 223 3 2 1043 950 238 75 36 chr9 60129802 60130081 -63946091 + B4 SINE B4 3 292 0 2 1043 703 280 39 87 chr9 60130138 60130424 -63945748 + B4A SINE B4 1 272 -20 2 1043 215 103 26 0 chr9 60130429 60130468 -63945704 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1043 31 26 0 0 chr9 60130470 60130508 -63945664 + AT_rich Low_complexity Low_complexity 1 38 0 2 1043 877 221 14 50 chr9 60130511 60130730 -63945442 - B3 SINE B2 -5 211 1 2 1043 958 239 64 8 chr9 60131829 60132065 -63944107 + MTD LTR MaLR 1 249 -170 2 1043 431 159 0 0 chr9 60132085 60132148 -63944024 - PB1D9 SINE Alu -48 72 10 2 1043 963 247 192 7 chr9 60132139 60132420 -63943752 + MTD LTR MaLR 73 405 -14 2 1043 450 248 84 15 chr9 60132431 60132562 -63943610 + B1_Mur2 SINE Alu 2 141 -8 2 1043 254 322 17 0 chr9 60132563 60132622 -63943550 + B4A SINE B4 221 280 -12 2 1043 521 291 176 48 chr9 60132770 60133105 -63943067 + LTR37A LTR ERV1 4 381 -45 2 1043 203 190 0 23 chr9 60133167 60133210 -63942962 + (CTACT)n Simple_repeat Simple_repeat 5 46 0 2 1043 1837 144 28 82 chr9 60133724 60134201 -63941971 + RMER17C LTR ERVK 16 439 -519 2 1043 325 269 30 0 chr9 60134309 60134376 -63941796 - B4 SINE B4 -15 277 209 2 1043 615 259 64 12 chr9 60134376 60134548 -63941624 - B3A SINE B2 -16 182 2 2 1043 590 259 163 0 chr9 60134597 60134763 -63941409 - B4 SINE B4 -98 194 2 2 1043 3592 58 0 54 chr9 60134853 60135164 -63941008 - L1_Mus1 LINE L1 -489 6078 5793 2 1043 823 103 17 8 chr9 60135164 60135282 -63940890 - PB1D9 SINE Alu 0 120 2 2 1043 3592 58 0 54 chr9 60135282 60135479 -63940693 - L1_Mus1 LINE L1 -775 5792 5597 2 1043 4128 54 12 0 chr9 60135479 60135977 -63940195 + L1_Mus1 LINE L1 6064 6567 0 2 1043 255 21 41 41 chr9 60135984 60136033 -63940139 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1043 408 20 0 0 chr9 60136488 60136537 -63939635 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2 1043 1661 147 218 29 chr9 60137195 60137613 -63938559 + RMER17C LTR ERVK 1 416 -542 2 1043 265 250 0 0 chr9 60137951 60138011 -63938161 + B1F SINE Alu 1 60 -89 2 1043 221 288 0 43 chr9 60137956 60138025 -63938147 + ID_B1 SINE B4 87 152 -72 2 1043 230 357 36 0 chr9 60138650 60138734 -63937438 - MIRb SINE MIR -165 103 17 2 1043 342 0 0 0 chr9 60139183 60139221 -63936951 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1043 207 0 0 0 chr9 60139221 60139244 -63936928 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1043 1149 59 0 0 chr9 60139244 60139380 -63936792 - B1_Mus1 SINE Alu -11 137 2 2 1043 474 279 77 13 chr9 60139381 60139537 -63936635 + ID_B1 SINE B4 48 213 -11 2 1043 482 320 62 84 chr9 60139812 60140085 -63936087 + B4 SINE B4 1 267 -25 3 1043 459 125 0 0 chr9 60140085 60140157 -63936015 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1043 935 179 141 0 chr9 60140422 60140606 -63935566 + B3 SINE B2 2 211 -5 3 1043 443 329 42 56 chr9 60141756 60141972 -63934200 + B4 SINE B4 33 245 -47 3 1043 457 267 136 85 chr9 60142230 60142488 -63933684 + RLTR18 LTR ERVK 345 615 -1 3 1043 423 0 0 0 chr9 60142562 60142609 -63933563 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1043 459 0 0 0 chr9 60142609 60142659 -63933513 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1043 234 268 24 12 chr9 60142881 60142964 -63933208 + CT-rich Low_complexity Low_complexity 5 88 0 3 1043 764 282 52 9 chr9 60143777 60143988 -63932184 + ID_B1 SINE B4 2 221 -3 3 1043 183 80 0 0 chr9 60144517 60144542 -63931630 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1043 504 48 0 0 chr9 60144880 60144943 -63931229 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1043 620 218 9 0 chr9 60144966 60145076 -63931096 - RSINE1 SINE B4 -36 129 19 3 1043 1114 254 88 44 chr9 60145546 60145928 -63930244 + MTE2a LTR MaLR 2 405 -14 3 1043 551 273 60 70 chr9 60146065 60146246 -63929926 - B4 SINE B4 -26 266 79 3 1043 426 39 0 0 chr9 60146246 60146298 -63929874 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1043 419 322 93 69 chr9 60146298 60146363 -63929809 - B4A SINE B4 -214 78 15 3 1043 679 280 155 0 chr9 60146394 60146587 -63929585 - ID_B1 SINE B4 0 224 2 3 1043 625 275 97 50 chr9 60147020 60147299 -63928873 + B4A SINE B4 1 292 0 3 1043 743 296 45 74 chr9 60147386 60147447 -63928725 + L1MC4 LINE L1 6646 6700 -1342 3 1043 477 0 0 0 chr9 60147447 60147500 -63928672 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1043 743 296 45 74 chr9 60147500 60147619 -63928553 + L1MC4 LINE L1 6701 6819 -1223 3 1043 1633 168 180 18 chr9 60147619 60147958 -63928214 + ORR1B1 LTR MaLR 1 394 0 3 1043 743 296 45 74 chr9 60147958 60148195 -63927977 + L1MC4 LINE L1 6820 7052 -990 3 1043 1167 75 0 0 chr9 60148202 60148348 -63927824 + B1_Mus1 SINE Alu 3 148 0 3 1043 461 306 95 30 chr9 60148458 60148825 -63927347 + L1MC4 LINE L1 7443 7833 -209 3 1043 3104 84 5 7 chr9 60148835 60149243 -63926929 - MTB_Mm LTR MaLR 0 407 1 3 1043 508 316 46 98 chr9 60149461 60149920 -63926252 + MLT1C LTR MaLR 1 435 -32 3 1043 479 281 157 66 chr9 60150734 60150932 -63925240 - B4 SINE B4 -60 232 17 3 1043 243 146 0 0 chr9 60151011 60151052 -63925120 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1043 212 304 29 0 chr9 60151265 60151334 -63924838 + GA-rich Low_complexity Low_complexity 4 74 0 3 1043 311 311 154 7 chr9 60151335 60151484 -63924688 + HAL1-3A_ME LINE L1 2285 2455 -403 3 1043 211 298 71 80 chr9 60151976 60152089 -63924083 + MIRm SINE MIR 84 195 -81 3 1043 749 258 114 25 chr9 60152516 60152803 -63923369 + MTD LTR MaLR 1 354 -65 3 1043 530 243 62 56 chr9 60153509 60153688 -63922484 + L1MA6 LINE L1 6079 6258 -42 3 1043 189 0 0 0 chr9 60153812 60153833 -63922339 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1043 195 313 109 20 chr9 60153837 60153938 -63922234 - MIR SINE MIR -75 187 78 3 1043 407 19 19 0 chr9 60154817 60154869 -63921303 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1043 798 209 7 7 chr9 60155139 60155288 -63920884 - B1_Mur1 SINE Alu 0 149 1 3 1043 492 312 126 23 chr9 60155453 60155715 -63920457 + B4 SINE B4 1 289 -3 3 1043 468 0 0 0 chr9 60156516 60156568 -63919604 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1043 378 0 0 0 chr9 60156568 60156609 -63919563 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1043 938 82 14 43 chr9 60156612 60156752 -63919420 - B1_Mur3 SINE Alu -8 141 6 3 1043 294 213 55 39 chr9 60156652 60156779 -63919393 - ORR1B1-int LTR MaLR -762 747 619 3 1043 590 255 119 13 chr9 60156776 60156935 -63919237 - ID_B1 SINE B4 -48 176 1 3 1043 401 312 88 65 chr9 60156961 60157177 -63918995 - ID_B1 SINE B4 -1 223 3 3 1043 456 72 0 0 chr9 60157243 60157312 -63918860 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 3 1043 281 292 42 0 chr9 60158694 60158766 -63917406 + L2c LINE L2 3283 3357 -30 3 1043 371 347 104 64 chr9 60158941 60159161 -63917011 + B4A SINE B4 1 229 -63 3 1043 432 0 0 0 chr9 60159161 60159209 -63916963 + (GGGGA)n Simple_repeat Simple_repeat 3 50 0 3 1043 371 347 104 64 chr9 60159209 60159268 -63916904 + B4A SINE B4 230 291 -1 3 1043 252 59 0 0 chr9 60159288 60159322 -63916850 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1043 187 320 62 25 chr9 60160124 60160204 -63915968 - L2a LINE L2 -25 3401 3319 3 1043 897 329 122 34 chr9 60160549 60160967 -63915205 + LTR16B2 LTR ERVL 1 455 -7 3 1044 303 271 131 29 chr9 60162144 60162281 -63913891 - MIRb SINE MIR -31 237 83 3 1044 1145 220 5 0 chr9 60162350 60162568 -63913604 + ID_B1 SINE B4 5 223 -1 3 1044 288 227 144 0 chr9 60162649 60162746 -63913426 - L1MA4A LINE L1 -373 5930 5820 3 1044 26 0 0 0 chr9 60162885 60162911 -63913261 + AT_rich Low_complexity Low_complexity 1 26 0 3 1044 655 244 52 0 chr9 60162911 60163046 -63913126 + B3 SINE B2 1 142 -74 3 1044 536 304 39 10 chr9 60163107 60163310 -63912862 - B3 SINE B2 -7 209 1 3 1044 740 322 57 29 chr9 60163818 60164099 -63912073 + B4A SINE B4 2 290 -2 3 1044 993 280 20 50 chr9 60164710 60165011 -63911161 - B4A SINE B4 0 292 1 3 1044 236 276 17 17 chr9 60165400 60165459 -63910713 + MIRm SINE MIR 213 271 -5 3 1044 2939 40 43 0 chr9 60165642 60165994 -63910178 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1044 213 39 0 0 chr9 60167401 60167427 -63908745 + (CACCAT)n Simple_repeat Simple_repeat 2 27 0 3 1044 224 356 8 8 chr9 60167443 60167576 -63908596 + (CAT)n Simple_repeat Simple_repeat 3 135 0 3 1044 356 333 26 63 chr9 60167605 60167794 -63908378 + HAL1-2a_MD LINE L1 2326 2507 -517 3 1044 244 339 0 46 chr9 60167821 60167951 -63908221 + (CACCAT)n Simple_repeat Simple_repeat 5 128 0 3 1044 365 318 67 38 chr9 60167952 60168149 -63908023 - MIR SINE MIR -25 237 40 3 1044 797 229 51 62 chr9 60168570 60168765 -63907407 + B3A SINE B2 6 198 0 3 1044 490 306 26 33 chr9 60168890 60169042 -63907130 + RMER30 DNA MER1_type 42 192 -10 3 1044 338 42 21 0 chr9 60169174 60169222 -63906950 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1044 399 41 0 0 chr9 60169708 60169757 -63906415 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1044 317 338 65 19 chr9 60169757 60169911 -63906261 + L1M4b LINE L1 1762 1922 -5412 3 1044 222 206 0 0 chr9 60169912 60169985 -63906187 + GA-rich Low_complexity Low_complexity 2 74 0 3 1044 207 146 0 0 chr9 60170021 60170062 -63906110 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1044 539 258 63 19 chr9 60170201 60170359 -63905813 - ID_B1 SINE B4 -14 210 46 3 1044 1159 184 5 5 chr9 60170403 60170605 -63905567 - B3 SINE B2 -14 202 1 3 1044 872 282 59 23 chr9 60171113 60171418 -63904754 - MER2 DNA MER2_type 0 345 30 3 1044 255 186 48 63 chr9 60171402 60171465 -63904707 + B3 SINE B2 11 72 -144 3 1044 275 309 42 56 chr9 60171491 60171635 -63904537 + MLT1G LTR MaLR 444 585 -6 3 1044 1072 187 4 103 chr9 60172329 60172562 -63903610 + URR1B DNA MER1_type 1 210 -15 3 1044 237 294 22 76 chr9 60172576 60172668 -63903504 + MIRb SINE MIR 65 151 -117 3 1044 521 278 88 22 chr9 60173150 60173286 -63902886 + RSINE1 SINE B4 20 164 -1 3 1044 3113 135 179 2 chr9 60174161 60174680 -63901492 - RMER19C LTR ERVK 0 611 1 3 1044 1243 220 114 16 chr9 60174746 60175124 -63901048 - MTD LTR MaLR 0 419 5 3 1044 1236 262 7 36 chr9 60175412 60175713 -63900459 + B4 SINE B4 1 292 0 3 1044 254 0 0 77 chr9 60175746 60175785 -63900387 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1044 290 282 42 8 chr9 60177202 60177320 -63898852 + CT-rich Low_complexity Low_complexity 4 125 0 3 1044 538 350 28 24 chr9 60177459 60177711 -63898461 + MLT1J2 LTR MaLR 38 290 -158 3 1044 228 214 0 0 chr9 60177722 60177764 -63898408 + MLT1J2 LTR MaLR 395 436 -12 3 1044 389 216 0 110 chr9 60178062 60178171 -63898001 + B1_Mur1 SINE Alu 24 149 0 3 1044 479 230 30 0 chr9 60178511 60178611 -63897561 + PB1D7 SINE Alu 1 103 -17 3 1044 441 0 0 0 chr9 60178615 60178664 -63897508 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 3 1044 373 372 57 7 chr9 60179551 60179830 -63896342 + L5 LINE RTE 524 816 -1449 3 1044 550 330 76 36 chr9 60179915 60180308 -63895864 + Lx9 LINE L1 7007 7415 -229 3 1044 314 250 41 14 chr9 60180362 60180435 -63895737 + RSINE1 SINE B4 80 154 -11 3 1044 363 105 0 0 chr9 60180966 60181023 -63895149 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1044 1245 274 41 27 chr9 60181834 60182172 -63894000 + MTE2a LTR MaLR 1 343 -36 3 1044 234 250 0 0 chr9 60182285 60182337 -63893835 + GA-rich Low_complexity Low_complexity 5 56 0 3 1044 1045 105 12 0 chr9 60182337 60182508 -63893664 + (GGGAGA)n Simple_repeat Simple_repeat 5 177 0 3 1044 442 299 45 94 chr9 60182633 60182878 -63893294 - MLT1B LTR MaLR -202 265 1 3 1044 346 293 61 69 chr9 60183475 60183708 -63892464 + MLT1J LTR MaLR 61 342 -170 3 1044 315 111 0 137 chr9 60183708 60183781 -63892391 + ID4_ SINE ID 5 67 -16 3 1044 346 321 74 97 chr9 60183781 60183970 -63892202 + MLT1J LTR MaLR 343 512 0 3 1044 229 308 55 79 chr9 60184055 60184182 -63891990 + MTC-int LTR MaLR 483 606 -652 3 1044 336 24 0 0 chr9 60184477 60184518 -63891654 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 3 1044 531 264 97 16 chr9 60184535 60184720 -63891452 + L1MB8 LINE L1 4853 5052 -1094 3 1044 949 105 0 0 chr9 60184718 60184842 -63891330 - L1_Mus1 LINE L1 -356 6211 6088 4 1044 2710 66 14 0 chr9 60184842 60185190 -63890982 + L1_Mus1 LINE L1 6215 6567 0 4 1044 1225 282 107 18 chr9 60185190 60186029 -63890143 + L1MB8 LINE L1 5038 5967 -211 3 1044 239 231 35 82 chr9 60186069 60186154 -63890018 + Helitron1Nb_Mam RC Helitron 34 114 -1002 4 1044 259 289 0 26 chr9 60186465 60186543 -63889629 + (TATG)n Simple_repeat Simple_repeat 3 78 0 4 1044 363 23 0 0 chr9 60186619 60186663 -63889509 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1044 714 168 0 42 chr9 60186663 60186781 -63889391 - B1_Mur2 SINE Alu -10 139 27 4 1044 462 307 70 73 chr9 60186855 60187252 -63888920 - Lx9 LINE L1 -27 7617 7222 4 1044 628 317 59 135 chr9 60187673 60188264 -63887908 + MER77 LTR ERVL 10 555 -52 4 1044 1091 112 17 23 chr9 60188273 60188447 -63887725 + URR1A DNA MER1_type 54 226 0 4 1044 411 113 0 0 chr9 60188838 60188900 -63887272 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1044 1007 311 23 0 chr9 60188905 60189169 -63887003 - B4A SINE B4 -17 275 6 4 1044 2872 239 182 14 chr9 60189189 60190423 -63885749 + RMER1A Other Other 1 1016 -14 4 1044 299 130 0 18 chr9 60190445 60190500 -63885672 + (GGA)n Simple_repeat Simple_repeat 2 55 0 4 1044 1305 243 87 39 chr9 60190500 60190856 -63885316 + MTD LTR MaLR 47 419 0 4 1044 608 192 136 0 chr9 60193251 60193376 -63882796 - B1_Mur1 SINE Alu -7 142 1 4 1044 525 181 0 186 chr9 60194180 60194309 -63881863 + B1F2 SINE Alu 16 149 0 4 1044 297 128 0 0 chr9 60196919 60196966 -63879206 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 4 1044 1250 242 156 12 chr9 60197071 60197578 -63878594 + L1MB7 LINE L1 4690 5269 -877 4 1044 1266 271 35 27 chr9 60197615 60197991 -63878181 - MTEa LTR MaLR 0 379 1 4 1044 804 169 14 34 chr9 60198015 60198162 -63878010 + B1_Mur4 SINE Alu 1 144 -6 4 1044 504 182 115 14 chr9 60198242 60198381 -63877791 + L1MB7 LINE L1 5320 5472 -712 4 1044 293 284 21 10 chr9 60198461 60198557 -63877615 + PB1D10 SINE Alu 15 111 -6 4 1044 283 307 184 12 chr9 60198772 60198940 -63877232 - MIR SINE MIR -36 226 30 4 1044 285 234 31 0 chr9 60199312 60199376 -63876796 + MER5A DNA MER1_type 28 93 -96 4 1044 345 183 160 19 chr9 60199322 60199428 -63876744 - MER5A DNA MER1_type -26 163 43 4 1044 1113 269 132 34 chr9 60199429 60200013 -63876159 + L1MB7 LINE L1 5523 6163 -21 4 1044 938 267 160 15 chr9 60200043 60200355 -63875817 + MTE2b LTR MaLR 23 374 -5 4 1044 186 341 47 35 chr9 60200411 60200496 -63875676 - MIR SINE MIR -77 131 46 4 1044 362 249 118 77 chr9 60202503 60202600 -63873572 + HAL1 LINE L1 616 719 -1788 4 1044 568 48 24 0 chr9 60202600 60202684 -63873488 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 1044 362 249 118 77 chr9 60202684 60202874 -63873298 + HAL1 LINE L1 720 920 -1587 4 1044 880 240 81 18 chr9 60202874 60203146 -63873026 + B4 SINE B4 2 290 -2 4 1044 362 249 118 77 chr9 60203146 60203170 -63873002 + HAL1 LINE L1 921 940 -1567 4 1044 1417 230 166 25 chr9 60203256 60203733 -63872439 + MLT2B4 LTR ERVL 5 548 -8 4 1044 217 48 71 0 chr9 60203746 60203788 -63872384 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 4 1044 1150 61 13 7 chr9 60203788 60203937 -63872235 - B1_Mur4 SINE Alu 0 150 1 4 1044 24 0 0 0 chr9 60203946 60203970 -63872202 + AT_rich Low_complexity Low_complexity 1 24 0 4 1044 752 234 104 0 chr9 60204062 60204213 -63871959 + B3 SINE B2 1 163 -53 4 1044 271 78 0 72 chr9 60204213 60204282 -63871890 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1044 752 234 104 0 chr9 60204282 60204322 -63871850 + B3 SINE B2 164 211 -5 4 1044 695 258 74 149 chr9 60204944 60205213 -63870959 - B4 SINE B4 -4 288 40 4 1044 240 301 119 33 chr9 60205246 60205397 -63870775 + Kanga2_a DNA Tc2 341 504 -384 4 1044 272 326 0 34 chr9 60206001 60206090 -63870082 + RMER30 DNA MER1_type 7 92 -110 4 1044 200 86 0 28 chr9 60206091 60206127 -63870045 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1044 405 184 75 65 chr9 60206139 60206232 -63869940 + RMER30 DNA MER1_type 109 202 0 4 1044 228 250 26 13 chr9 60207014 60207091 -63869081 + CT-rich Low_complexity Low_complexity 2 79 0 4 1044 1031 248 4 13 chr9 60207092 60207317 -63868855 - ID_B1 SINE B4 0 224 2 4 1044 972 300 42 35 chr9 60207420 60207688 -63868484 + B4A SINE B4 1 274 -18 4 1044 422 36 18 0 chr9 60207688 60207744 -63868428 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1044 972 300 42 35 chr9 60207744 60207762 -63868410 + B4A SINE B4 275 289 -3 4 1044 332 121 69 0 chr9 60208133 60208191 -63867981 - MTEa LTR MaLR -8 371 310 4 1044 881 236 71 11 chr9 60208568 60208850 -63867322 + L1_Rod LINE L1 464 762 -6410 4 1044 764 227 9 100 chr9 60209399 60209629 -63866543 - Tigger12c DNA MER2_type -5 729 521 4 1044 750 278 91 28 chr9 60209948 60210200 -63865972 + B4A SINE B4 2 269 -23 4 1044 399 21 0 0 chr9 60210202 60210250 -63865922 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1044 358 123 55 0 chr9 60210518 60210591 -63865581 + GA-rich Low_complexity Low_complexity 3 79 0 4 1044 523 250 50 33 chr9 60210696 60210816 -63865356 + ID_B1 SINE B4 102 223 -1 4 1044 233 167 0 18 chr9 60211316 60211371 -63864801 + CT-rich Low_complexity Low_complexity 1 54 0 4 1044 283 170 0 0 chr9 60211371 60211418 -63864754 - ID_B1 SINE B4 -4 220 174 4 1044 250 194 65 44 chr9 60211374 60211458 -63864714 - PB1D10 SINE Alu -7 142 54 4 1044 540 56 0 0 chr9 60212712 60212784 -63863388 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1044 216 183 0 48 chr9 60213341 60213385 -63862787 + T-rich Low_complexity Low_complexity 19 60 0 4 1044 626 239 16 114 chr9 60213385 60213631 -63862541 - ID_B1 SINE B4 -1 223 2 4 1044 216 183 0 48 chr9 60213631 60213649 -63862523 + T-rich Low_complexity Low_complexity 1 18 0 4 1044 847 282 59 44 chr9 60214577 60214848 -63861324 + B4 SINE B4 16 290 -2 4 1044 208 143 0 0 chr9 60214882 60214917 -63861255 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1044 766 255 4 52 chr9 60215184 60215416 -63860756 + ID_B1 SINE B4 4 224 0 4 1044 1023 248 38 30 chr9 60216595 60216857 -63859315 - B4 SINE B4 -22 270 7 4 1044 231 286 25 25 chr9 60217770 60217849 -63858323 + B4A SINE B4 15 93 -199 4 1044 682 246 75 6 chr9 60217868 60218177 -63857995 - L1M2 LINE L1 -818 5473 5137 4 1044 1634 136 173 18 chr9 60218199 60218528 -63857644 - ORR1C2 LTR MaLR 0 384 5 4 1044 186 71 0 0 chr9 60218788 60218816 -63857356 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1044 514 306 0 8 chr9 60218840 60218962 -63857210 - RSINE1 SINE B4 -41 124 4 4 1044 771 186 47 73 chr9 60218984 60219175 -63856997 - B3 SINE B2 0 216 31 4 1044 289 226 0 0 chr9 60219271 60219324 -63856848 - B3 SINE B2 -162 54 2 4 1044 1008 303 49 48 chr9 60219333 60219880 -63856292 - L1ME2 LINE L1 -1 6163 5616 4 1044 306 0 0 0 chr9 60220039 60220073 -63856099 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1044 319 259 3 36 chr9 60220128 60220228 -63855944 + Tigger7 DNA MER2_type 2236 2403 -88 4 1044 1361 225 21 108 chr9 60220228 60220617 -63855555 + ORR1E LTR MaLR 3 357 -2 4 1044 259 321 17 78 chr9 60220617 60220697 -63855475 + Tigger7 DNA MER2_type 2404 2478 -13 4 1044 599 57 0 11 chr9 60221442 60221531 -63854641 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 1044 859 262 188 0 chr9 60221574 60221814 -63854358 - B4 SINE B4 -6 286 2 4 1044 597 266 85 136 chr9 60222010 60222429 -63853743 - MLT1C LTR MaLR -6 461 65 4 1044 277 182 0 0 chr9 60222429 60222473 -63853699 - MTD LTR MaLR 0 419 376 4 1044 760 238 0 20 chr9 60222474 60222620 -63853552 + B1_Mus2 SINE Alu 1 143 -4 4 1044 243 0 0 0 chr9 60222620 60222647 -63853525 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 4 1044 1689 167 116 39 chr9 60222654 60223016 -63853156 - MTD LTR MaLR -29 390 1 4 1044 973 92 0 28 chr9 60223114 60223259 -63852913 + URR1B DNA MER1_type 85 225 0 4 1044 286 350 107 0 chr9 60223388 60223565 -63852607 + MLT1K LTR MaLR 400 595 0 4 1044 339 271 0 0 chr9 60223618 60223688 -63852484 + ID_B1 SINE B4 77 146 -78 4 1044 231 288 68 14 chr9 60223980 60224054 -63852118 + ID4 SINE ID 4 81 -2 4 1044 616 267 97 71 chr9 60224093 60224331 -63851841 + B4A SINE B4 3 246 -46 4 1044 1671 240 74 16 chr9 60224331 60224818 -63851354 + Lx9 LINE L1 7126 7640 -4 4 1044 239 234 0 135 chr9 60224818 60224907 -63851265 + B4A SINE B4 216 292 0 4 1044 223 328 101 58 chr9 60225187 60225326 -63850846 - MIR SINE MIR -22 240 96 4 1044 461 202 22 34 chr9 60225725 60225904 -63850268 + (TATG)n Simple_repeat Simple_repeat 2 178 0 4 1044 306 98 0 0 chr9 60225903 60225954 -63850218 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1044 236 348 0 0 chr9 60226587 60226656 -63849516 + RSINE1 SINE B4 3 71 -94 4 1044 395 19 19 0 chr9 60226660 60226712 -63849460 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1044 206 333 31 20 chr9 60226866 60226964 -63849208 - MIR SINE MIR -61 147 49 4 1044 463 236 34 0 chr9 60227179 60227292 -63848880 + ORR1D1 LTR MaLR 5 129 -249 4 1044 1949 187 47 21 chr9 60227292 60227834 -63848338 + L1Md_T LINE L1 5514 6204 -1492 4 1044 671 249 172 78 chr9 60227835 60228231 -63847941 - RMER10A LTR ERVL -9 433 1 4 1044 5629 206 77 8 chr9 60228231 60229418 -63846754 + Lx6 LINE L1 6192 7460 0 4 1044 273 250 100 0 chr9 60229504 60229584 -63846588 + B4A SINE B4 2 89 -203 4 1044 593 316 142 9 chr9 60229584 60229916 -63846256 + L1Md_T LINE L1 6937 7312 -384 4 1044 258 156 44 0 chr9 60230069 60230114 -63846058 + polypurine Low_complexity Low_complexity 1 47 0 4 1044 515 142 9 0 chr9 60230123 60230229 -63845943 + GA-rich Low_complexity Low_complexity 2 108 0 4 1044 729 227 138 69 chr9 60231783 60232029 -63844143 + B4A SINE B4 1 263 -29 4 1044 207 0 0 0 chr9 60232078 60232101 -63844071 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1044 875 269 29 9 chr9 60232682 60232892 -63843280 - ID_B1 SINE B4 0 224 11 4 1044 597 40 0 0 chr9 60232935 60233011 -63843161 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1044 203 0 0 36 chr9 60233011 60233038 -63843134 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1044 217 234 0 0 chr9 60233529 60233576 -63842596 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1044 503 306 105 29 chr9 60233595 60233804 -63842368 - B4 SINE B4 -18 274 50 5 1044 678 273 0 57 chr9 60234042 60234217 -63841955 - RSINE1 SINE B4 0 165 1 5 1044 408 158 0 0 chr9 60234295 60234371 -63841801 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1044 5255 41 0 0 chr9 60235167 60235782 -63840390 - L1Md_T LINE L1 0 6582 5968 5 1044 1507 133 4 0 chr9 60235870 60236095 -63840077 + URR1A DNA MER1_type 1 226 0 5 1044 283 244 90 121 chr9 60236493 60236584 -63839588 - PB1D10 SINE Alu -16 104 17 5 1044 738 170 316 0 chr9 60237055 60237226 -63838946 + URR1B DNA MER1_type 1 225 0 5 1044 264 390 16 0 chr9 60237621 60237744 -63838428 + LTR89 LTR ERVL? 273 397 -482 5 1044 1310 313 97 6 chr9 60237734 60238219 -63837953 + MER68 LTR ERVL 31 559 -4 5 1044 230 308 15 0 chr9 60238249 60238314 -63837858 + LTR89 LTR ERVL? 416 481 -398 5 1044 1725 143 95 13 chr9 60238439 60238743 -63837429 + ORR1A4 LTR MaLR 1 329 0 5 1044 526 244 114 0 chr9 60239017 60239148 -63837024 - B1_Mur2 SINE Alu -1 148 3 5 1044 605 232 83 6 chr9 60239199 60239368 -63836804 + B3A SINE B2 1 182 -16 5 1044 361 150 0 20 chr9 60239391 60239493 -63836679 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 1044 330 26 0 0 chr9 60239494 60239533 -63836639 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 1044 324 0 0 0 chr9 60239533 60239568 -63836604 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1044 263 238 175 0 chr9 60239790 60239870 -63836302 - MIRc SINE MIR -6 262 169 5 1044 379 244 0 0 chr9 60239881 60239963 -63836209 - ID4 SINE ID 0 83 2 5 1044 323 359 4 120 chr9 60240609 60240843 -63835329 - MamRep38 DNA hAT 0 295 89 5 1044 694 229 72 3 chr9 60240928 60241109 -63835063 + B4A SINE B4 1 241 -51 5 1044 751 274 19 19 chr9 60241083 60241295 -63834877 + B3 SINE B2 5 216 0 5 1044 228 122 0 0 chr9 60241532 60241573 -63834599 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 5 1044 780 110 0 0 chr9 60241573 60241682 -63834490 - B1_Mus2 SINE Alu -37 110 2 5 1044 386 238 0 82 chr9 60241584 60241694 -63834478 - MT2B LTR ERVL -347 254 154 5 1044 279 0 0 0 chr9 60241713 60241744 -63834428 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1044 183 42 0 0 chr9 60242705 60242729 -63833443 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1044 242 182 106 0 chr9 60243182 60243248 -63832924 + ID2 SINE ID 2 74 -9 5 1044 534 232 9 54 chr9 60243298 60243460 -63832712 - B3A SINE B2 -18 177 37 5 1044 285 300 12 12 chr9 60243767 60243848 -63832324 + MIR3 SINE MIR 126 206 -2 5 1044 265 211 38 50 chr9 60244464 60244544 -63831628 + B3A SINE B2 2 80 -118 5 1044 457 270 71 9 chr9 60244554 60244666 -63831506 + B4A SINE B4 152 270 -22 5 1044 237 185 18 53 chr9 60245377 60245434 -63830738 - MER5A1 DNA MER1_type -108 58 4 5 1044 811 262 124 118 chr9 60246339 60246685 -63829487 + MTE2a LTR MaLR 1 348 -31 5 1044 284 189 44 167 chr9 60246777 60246891 -63829281 + MIR SINE MIR 31 130 -132 5 1044 297 303 30 101 chr9 60247402 60247571 -63828601 - MER5A1 DNA MER1_type -1 165 9 5 1044 201 359 39 0 chr9 60247962 60248040 -63828132 + L2b LINE L2 3270 3350 -25 5 1044 991 175 90 0 chr9 60248062 60248251 -63827921 + B3 SINE B2 2 207 -9 5 1044 998 290 7 24 chr9 60248599 60248892 -63827280 + B4 SINE B4 3 290 -2 5 1044 1254 236 127 20 chr9 60249843 60250237 -63825935 + Lx8 LINE L1 7032 7467 -6 5 1044 1038 226 23 5 chr9 60250282 60250500 -63825672 + ID_B1 SINE B4 1 222 -2 5 1044 405 0 0 0 chr9 60250523 60250568 -63825604 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1044 414 0 0 0 chr9 60250568 60250613 -63825559 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1044 659 187 42 28 chr9 60250834 60250977 -63825195 + B1F SINE Alu 5 149 0 5 1044 237 65 0 0 chr9 60251527 60251558 -63824614 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 5 1044 940 191 46 0 chr9 60251626 60251799 -63824373 + B3 SINE B2 36 216 0 5 1044 489 34 0 0 chr9 60251911 60251970 -63824202 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1044 401 317 39 4 chr9 60252544 60252760 -63823412 + B4 SINE B4 1 286 -6 5 1044 770 252 28 23 chr9 60254179 60254394 -63821778 - B3 SINE B2 0 216 1 5 1044 369 0 0 0 chr9 60255779 60255820 -63820352 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1044 315 0 0 0 chr9 60255820 60255854 -63820318 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1044 299 154 15 0 chr9 60255924 60255989 -63820183 + CT-rich Low_complexity Low_complexity 2 67 0 5 1044 668 180 6 27 chr9 60256010 60256193 -63819979 + CT-rich Low_complexity Low_complexity 2 180 0 5 1044 710 239 53 14 chr9 60256193 60256401 -63819771 - B4 SINE B4 -67 225 10 5 1044 301 225 41 27 chr9 60256336 60256409 -63819763 - ID2 SINE ID -9 74 1 5 1044 590 284 64 134 chr9 60257108 60257421 -63818751 + B4 SINE B4 2 292 0 5 1044 250 319 51 67 chr9 60257931 60258109 -63818063 - MLT1D LTR MaLR -184 321 147 5 1044 21 36 0 0 chr9 60258271 60258299 -63817873 + AT_rich Low_complexity Low_complexity 1 28 0 5 1044 510 226 30 61 chr9 60258304 60258436 -63817736 - MLT1D LTR MaLR -353 152 25 5 1044 198 71 0 0 chr9 60260001 60260029 -63816143 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1044 648 261 108 11 chr9 60260035 60260221 -63815951 + B3A SINE B2 7 210 -6 5 1044 229 333 39 39 chr9 60260364 60260467 -63815705 - MIRc SINE MIR -31 237 135 5 1044 481 270 24 24 chr9 60260835 60261010 -63815162 + ID_B1 SINE B4 1 219 -5 5 1044 401 264 71 8 chr9 60260889 60261015 -63815157 + B1F SINE Alu 16 149 0 5 1044 272 271 78 4 chr9 60261054 60261169 -63815003 - MIR SINE MIR -57 151 25 5 1044 653 266 28 34 chr9 60261503 60261711 -63814461 + B3A SINE B2 11 216 0 5 1044 2140 199 70 92 chr9 60262574 60263228 -63812944 - Lx7 LINE L1 -2 7694 7055 5 1044 1256 255 62 62 chr9 60263253 60263767 -63812405 - Lx9 LINE L1 -5 7639 7126 5 1044 298 320 101 41 chr9 60264137 60264355 -63811817 + MLT1D LTR MaLR 272 502 -3 5 1044 210 342 120 35 chr9 60264650 60264850 -63811322 + L2b LINE L2 2970 3186 -189 5 1044 616 292 150 61 chr9 60265381 60265727 -63810445 + MTE2a LTR MaLR 3 379 0 5 1044 204 274 177 72 chr9 60265975 60266156 -63810016 + MIRc SINE MIR 23 222 -46 5 1044 482 281 47 147 chr9 60266819 60267119 -63809053 + Lx8 LINE L1 7058 7327 -146 5 1044 3061 234 122 98 chr9 60268006 60269357 -63806815 + RMER1A Other Other 8 1020 -10 5 1044 1372 274 121 84 chr9 60269468 60269716 -63806456 + L1MB3 LINE L1 5329 5600 -583 5 1044 701 236 0 42 chr9 60269716 60269884 -63806288 + RSINE1 SINE B4 3 163 -2 5 1044 1372 274 121 84 chr9 60269884 60270232 -63805940 + L1MB3 LINE L1 5601 5953 -230 5 1044 3288 27 22 24 chr9 60270232 60270644 -63805528 + IAPLTR2a LTR ERVK 1 411 0 5 1044 1372 274 121 84 chr9 60270644 60270831 -63805341 + L1MB3 LINE L1 5954 6142 -41 5 1044 843 216 85 81 chr9 60271503 60271699 -63804473 - B4A SINE B4 0 292 108 5 1044 459 0 0 0 chr9 60271699 60271750 -63804422 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1044 843 216 85 81 chr9 60271750 60271800 -63804372 - B4A SINE B4 -185 107 47 5 1044 590 255 117 48 chr9 60271806 60272012 -63804160 - MTE2b LTR MaLR -115 264 45 5 1044 384 40 0 0 chr9 60272173 60272223 -63803949 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1044 402 100 0 0 chr9 60272223 60272282 -63803890 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1044 216 289 54 2 chr9 60273093 60273181 -63802991 + MIRb SINE MIR 31 128 -140 5 1044 535 292 39 113 chr9 60273282 60273591 -63802581 + MER46C DNA MER2_type 14 299 -39 5 1044 424 275 136 68 chr9 60273798 60273925 -63802247 - Lx8 LINE L1 -6 7467 7355 5 1044 216 97 0 0 chr9 60273925 60273956 -63802216 + (TATG)n Simple_repeat Simple_repeat 4 34 0 5 1044 424 275 136 68 chr9 60273956 60274093 -63802079 - Lx8 LINE L1 -119 7354 7186 5 1044 239 216 0 38 chr9 60274263 60274308 -63801864 - MTC LTR MaLR 0 421 377 5 1044 1242 55 0 0 chr9 60274308 60274454 -63801718 + B1_Mus2 SINE Alu 1 146 -1 5 1044 1658 167 0 66 chr9 60274499 60274801 -63801371 - MTC LTR MaLR -31 390 109 5 1044 1301 27 0 0 chr9 60274801 60274948 -63801224 + B1_Mus1 SINE Alu 2 148 0 5 1044 288 102 0 0 chr9 60274951 60275000 -63801172 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1044 2101 166 31 52 chr9 60275003 60275384 -63800788 - MTC LTR MaLR -31 390 18 5 1044 488 296 106 73 chr9 60275562 60275751 -63800421 + B4 SINE B4 1 212 -80 5 1044 315 0 0 0 chr9 60275751 60275786 -63800386 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1044 488 296 106 73 chr9 60275786 60275869 -63800303 + B4 SINE B4 213 282 -10 5 1044 1799 182 165 104 chr9 60276542 60277064 -63799108 + MT2B LTR ERVL 1 528 -73 5 1044 558 98 0 0 chr9 60277064 60277146 -63799026 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 5 1044 1799 182 165 104 chr9 60277146 60277188 -63798984 + MT2B LTR ERVL 529 598 -3 5 1044 805 270 114 46 chr9 60277205 60277360 -63798812 + MTEa LTR MaLR 72 224 -155 5 1044 288 0 0 0 chr9 60277360 60277392 -63798780 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1044 805 270 114 46 chr9 60277392 60277516 -63798656 + MTEa LTR MaLR 225 370 -9 5 1044 888 224 210 12 chr9 60278105 60278519 -63797653 + RMER5 LTR ERV1 33 527 -7 5 1044 946 293 41 52 chr9 60278585 60278976 -63797196 - MTE2a LTR MaLR -15 404 6 5 1044 207 0 0 0 chr9 60279085 60279108 -63797064 + (GCTG)n Simple_repeat Simple_repeat 4 26 0 5 1044 207 306 22 0 chr9 60279226 60279293 -63796879 - MIRc SINE MIR -114 162 89 5 1044 1239 165 63 0 chr9 60279419 60279625 -63796547 - URR1B DNA MER1_type -4 221 3 5 1044 250 257 0 28 chr9 60280673 60280745 -63795427 + MLT1B LTR MaLR 288 357 -33 5 1044 215 314 0 0 chr9 60282129 60282199 -63793973 - MIRb SINE MIR -8 260 191 5 1044 207 250 0 0 chr9 60283192 60283248 -63792924 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1044 1253 260 7 27 chr9 60283250 60283543 -63792629 - B4 SINE B4 -2 290 4 6 1044 1717 217 31 42 chr9 60284284 60284708 -63791464 + MTD LTR MaLR 1 419 0 6 1044 422 308 126 0 chr9 60284708 60284851 -63791321 + RSINE1 SINE B4 5 165 0 6 1044 392 223 18 0 chr9 60284851 60284963 -63791209 + (CATATA)n Simple_repeat Simple_repeat 5 118 0 6 1044 255 250 200 40 chr9 60285269 60285394 -63790778 - B1F1 SINE Alu 0 149 5 6 1044 252 0 0 0 chr9 60286288 60286316 -63789856 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 6 1044 1232 229 38 38 chr9 60286448 60286738 -63789434 + B4A SINE B4 3 292 0 6 1044 462 249 11 6 chr9 60286747 60286921 -63789251 + GA-rich Low_complexity Low_complexity 6 180 0 6 1044 189 348 104 42 chr9 60287384 60287528 -63788644 + MER5A DNA MER1_type 3 155 -34 6 1044 438 258 108 0 chr9 60288678 60288798 -63787374 + B4A SINE B4 4 136 -156 6 1044 979 94 36 0 chr9 60289083 60289221 -63786951 + B1_Mur4 SINE Alu 2 144 -6 6 1044 207 329 48 12 chr9 60289457 60289540 -63786632 + L2c LINE L2 3250 3335 -52 6 1044 312 343 15 15 chr9 60289593 60289729 -63786443 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 6 1044 211 302 139 23 chr9 60289888 60290017 -63786155 + L2b LINE L2 2068 2211 -1208 6 1044 221 351 0 81 chr9 60290490 60290651 -63785521 + L2b LINE L2 3055 3202 -173 6 1044 826 272 32 54 chr9 60290859 60291139 -63785033 - B4 SINE B4 -18 274 1 6 1044 24 32 0 0 chr9 60291241 60291272 -63784900 + AT_rich Low_complexity Low_complexity 1 31 0 6 1044 26 30 0 0 chr9 60291838 60291871 -63784301 + AT_rich Low_complexity Low_complexity 1 33 0 6 1044 462 254 76 21 chr9 60291889 60292034 -63784138 - RSINE1 SINE B4 -9 156 4 6 1044 391 285 5 58 chr9 60292205 60292395 -63783777 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1044 207 316 0 10 chr9 60292452 60292548 -63783624 + (CA)n Simple_repeat Simple_repeat 1 95 0 6 1044 363 23 0 0 chr9 60292577 60292621 -63783551 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1044 201 280 202 8 chr9 60292797 60292916 -63783256 - MIRb SINE MIR -92 176 35 6 1045 370 262 0 4 chr9 60293372 60293464 -63782708 + ID4_ SINE ID 5 94 -58 6 1045 1578 304 32 34 chr9 60294241 60294809 -63781363 + Lx9 LINE L1 6858 7424 -220 6 1045 189 0 0 0 chr9 60294832 60294853 -63781319 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1045 726 152 0 0 chr9 60294905 60295030 -63781142 + GA-rich Low_complexity Low_complexity 3 127 0 6 1045 261 0 0 0 chr9 60295028 60295057 -63781115 + (CAG)n Simple_repeat Simple_repeat 2 30 0 6 1045 585 0 0 0 chr9 60295057 60295122 -63781050 + (CCA)n Simple_repeat Simple_repeat 1 65 0 6 1045 576 248 234 0 chr9 60295933 60296232 -63779940 - Lx9 LINE L1 -45 7599 7231 6 1045 405 0 0 0 chr9 60296842 60296887 -63779285 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1045 236 299 81 0 chr9 60297662 60297749 -63778423 - MIRb SINE MIR -60 208 115 6 1045 712 296 5 48 chr9 60297797 60298006 -63778166 + B4 SINE B4 33 232 -60 6 1045 657 38 0 0 chr9 60298019 60298099 -63778073 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 1045 207 0 0 0 chr9 60299537 60299560 -63776612 + (CAAAC)n Simple_repeat Simple_repeat 3 25 0 6 1045 508 239 225 10 chr9 60299979 60300197 -63775975 - B4A SINE B4 -26 266 2 6 1045 519 123 0 0 chr9 60300608 60300689 -63775483 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 6 1045 4246 121 20 11 chr9 60300689 60301331 -63774841 - Lx4A LINE L1 -17 7041 6394 6 1045 1092 90 7 0 chr9 60303023 60303168 -63773004 + B1_Mus1 SINE Alu 1 146 -2 6 1045 227 164 36 0 chr9 60303168 60303223 -63772949 + A-rich Low_complexity Low_complexity 1 57 0 6 1045 243 146 0 0 chr9 60303469 60303510 -63772662 + (GGA)n Simple_repeat Simple_repeat 2 42 0 6 1045 231 292 44 0 chr9 60303529 60303611 -63772561 + MIRm SINE MIR 165 265 -11 6 1045 343 212 0 15 chr9 60303875 60303942 -63772230 + ID4 SINE ID 2 67 -16 6 1045 572 200 0 6 chr9 60303958 60304119 -63772053 + (CA)n Simple_repeat Simple_repeat 2 161 0 6 1045 207 182 0 0 chr9 60304953 60304986 -63771186 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6 1045 195 42 0 0 chr9 60305244 60305268 -63770904 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 6 1045 369 280 28 0 chr9 60305962 60306069 -63770103 + PB1D7 SINE Alu 3 112 -8 6 1045 305 358 26 26 chr9 60306132 60306287 -63769885 + HAL1-3A_ME LINE L1 2284 2438 -420 6 1045 351 0 0 0 chr9 60306847 60306886 -63769286 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1045 522 0 0 0 chr9 60306886 60306943 -63769229 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1045 364 346 111 9 chr9 60306967 60307125 -63769047 - B4A SINE B4 -10 282 105 6 1045 2835 18 0 47 chr9 60307125 60307468 -63768704 + IAPLTR2b LTR ERVK 1 327 0 6 1045 364 346 111 9 chr9 60307468 60307525 -63768647 - B4A SINE B4 -188 104 46 6 1045 565 203 103 73 chr9 60309123 60309288 -63766884 + RMER30 DNA MER1_type 31 200 -2 6 1045 249 305 9 71 chr9 60309713 60309826 -63766346 + L2a LINE L2 2989 3094 -332 6 1045 282 125 0 0 chr9 60309828 60309876 -63766296 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 6 1045 242 282 295 18 chr9 60309883 60309995 -63766177 - RSINE1 SINE B4 -21 144 2 6 1045 225 0 0 0 chr9 60310528 60310553 -63765619 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1045 550 248 15 68 chr9 60310571 60310770 -63765402 + B3A SINE B2 2 188 -5 6 1045 294 29 0 0 chr9 60311109 60311144 -63765028 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1045 351 270 82 65 chr9 60311144 60311360 -63764812 - B4 SINE B4 -11 281 1 6 1045 429 20 0 0 chr9 60311539 60311589 -63764583 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1045 306 0 0 0 chr9 60311589 60311622 -63764550 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1045 392 187 19 125 chr9 60311626 60311730 -63764442 - B1F1 SINE Alu -54 95 3 6 1045 626 283 152 10 chr9 60312178 60312370 -63763802 + L1MA4A LINE L1 5519 5789 -514 6 1045 195 100 0 0 chr9 60312370 60312400 -63763772 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1045 626 281 156 4 chr9 60312400 60312522 -63763650 + L1MA4A LINE L1 5790 5931 -372 6 1045 304 253 82 31 chr9 60313124 60313222 -63762950 - HAL1-3A_ME LINE L1 -780 2078 1976 6 1045 207 259 0 0 chr9 60313222 60313280 -63762892 + (TATG)n Simple_repeat Simple_repeat 4 61 0 6 1045 519 270 83 26 chr9 60313285 60313441 -63762731 - RSINE1 SINE B4 0 165 1 6 1045 358 280 48 29 chr9 60313680 60313783 -63762389 + MER20 DNA MER1_type 29 133 -86 6 1045 487 263 80 96 chr9 60313907 60314157 -63762015 + B4A SINE B4 4 238 -54 6 1045 600 265 122 14 chr9 60314255 60314469 -63761703 - MIR SINE MIR -7 255 19 6 1045 411 21 0 0 chr9 60315471 60315519 -63760653 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 6 1045 320 282 23 100 chr9 60315526 60315656 -63760516 - L1M4b LINE L1 -3655 3679 3598 6 1045 789 284 78 26 chr9 60315691 60315962 -63760210 - B4 SINE B4 0 292 8 6 1045 483 258 0 0 chr9 60315978 60316071 -63760101 - PB1 SINE Alu 0 127 35 6 1045 262 302 109 25 chr9 60316363 60316482 -63759690 + ORR1E LTR MaLR 21 149 -210 6 1045 268 380 0 0 chr9 60317290 60317361 -63758811 - B4 SINE B4 0 292 222 6 1045 564 233 123 0 chr9 60317373 60317519 -63758653 - MT2A LTR ERVL 0 533 370 6 1045 336 303 52 22 chr9 60317526 60317661 -63758511 - MTD LTR MaLR -280 139 1 6 1045 564 294 49 43 chr9 60317665 60317850 -63758322 - B4 SINE B4 -105 187 2 6 1045 320 260 20 83 chr9 60317937 60318178 -63757994 - L1ME2z LINE L1 -83 6079 5867 6 1045 727 207 145 0 chr9 60318207 60318352 -63757820 + B3A SINE B2 5 170 -28 6 1045 333 47 0 0 chr9 60318362 60318405 -63757767 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1045 381 271 94 6 chr9 60318475 60318635 -63757537 - L1ME1 LINE L1 -12 6167 5994 6 1045 475 290 48 11 chr9 60318667 60318855 -63757317 - L1ME1 LINE L1 -754 5392 5198 6 1045 750 254 86 0 chr9 60318883 60319080 -63757092 - B3 SINE B2 0 216 3 6 1045 1288 294 185 30 chr9 60319080 60319210 -63756962 - L1ME1 LINE L1 -980 5163 5035 6 1045 1306 102 92 5 chr9 60319210 60319417 -63756755 - URR1A DNA MER1_type 0 226 2 6 1045 1288 291 124 35 chr9 60319417 60320330 -63755842 - L1ME1 LINE L1 -1110 5036 3958 6 1045 665 343 97 29 chr9 60320369 60320813 -63755359 - L1MEc LINE L1 -1186 5133 4660 6 1045 314 276 136 29 chr9 60320801 60321081 -63755091 - L1MEc LINE L1 -4189 2211 1902 6 1045 289 197 45 0 chr9 60321286 60321352 -63754820 - L1MEc LINE L1 -4555 1845 1777 6 1045 449 343 62 7 chr9 60321361 60321505 -63754667 + RSINE1 SINE B4 4 155 -10 6 1045 320 0 0 24 chr9 60321506 60321547 -63754625 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1045 471 185 85 21 chr9 60321581 60321675 -63754497 - PB1D10 SINE Alu -5 112 13 6 1045 213 295 33 0 chr9 60321624 60321685 -63754487 - B4A SINE B4 -145 147 85 6 1045 298 261 152 0 chr9 60321733 60321825 -63754347 - L1MEc LINE L1 -4696 1719 1614 6 1045 649 332 131 58 chr9 60321850 60323137 -63753035 - L1MEc LINE L1 -4879 1521 142 6 1045 335 324 154 29 chr9 60323278 60323694 -63752478 - L1ME2z LINE L1 -377 5787 5320 6 1045 227 224 20 0 chr9 60324199 60324248 -63751924 - L1ME2z LINE L1 -1061 5085 5036 6 1045 5001 94 7 3 chr9 60324275 60324955 -63751217 - L1_Mus1 LINE L1 -1 6566 5884 6 1045 6192 84 10 0 chr9 60324955 60325777 -63750395 + L1_Mus1 LINE L1 5052 5881 -2 6 1045 735 291 124 12 chr9 60326245 60326495 -63749677 + B4A SINE B4 15 292 0 6 1045 342 0 0 0 chr9 60326636 60326674 -63749498 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1045 260 338 0 0 chr9 60327305 60327379 -63748793 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 6 1045 801 280 108 11 chr9 60327401 60327661 -63748511 - B4 SINE B4 -6 286 2 6 1045 756 296 20 0 chr9 60327693 60327892 -63748280 + MER58A DNA MER1_type 1 203 -21 6 1045 510 283 72 0 chr9 60328426 60328564 -63747608 + RSINE1 SINE B4 2 149 -16 6 1045 264 122 0 0 chr9 60328564 60328605 -63747567 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1045 268 200 18 18 chr9 60328941 60328997 -63747175 - L2a LINE L2 -2 3424 3369 6 1045 824 173 58 0 chr9 60329512 60329668 -63746504 - URR1A DNA MER1_type 0 226 62 6 1045 186 43 0 0 chr9 60329767 60329790 -63746382 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 6 1045 244 322 43 43 chr9 60330885 60330979 -63745193 + MIRb SINE MIR 48 141 -127 6 1045 942 257 14 60 chr9 60331049 60331334 -63744838 + B4 SINE B4 2 273 -19 7 1045 1087 100 0 16 chr9 60331349 60331532 -63744640 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1045 1205 141 92 5 chr9 60331955 60332162 -63744010 + URR1B DNA MER1_type 1 225 0 7 1045 434 268 0 20 chr9 60332352 60332451 -63743721 - B1F SINE Alu -10 139 43 7 1045 225 292 94 58 chr9 60332375 60332513 -63743659 - RLTR25A LTR ERVK -514 589 447 7 1045 426 160 28 74 chr9 60332714 60332822 -63743350 - Lx6 LINE L1 -2 7458 7356 7 1045 6093 194 50 32 chr9 60332839 60333570 -63742602 - Lx6 LINE L1 -573 6887 6174 7 1045 423 56 0 0 chr9 60333570 60333624 -63742548 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1045 6093 161 25 56 chr9 60333624 60334606 -63741566 - Lx6 LINE L1 -1287 6173 5192 7 1045 321 89 0 0 chr9 60334612 60334657 -63741515 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 7 1045 443 279 50 6 chr9 60334688 60334858 -63741314 + B4A SINE B4 108 292 0 7 1045 262 294 40 59 chr9 60334767 60334861 -63741311 - RMER12 LTR ERVK -431 891 794 7 1045 219 69 0 0 chr9 60334861 60334890 -63741282 + (TATG)n Simple_repeat Simple_repeat 3 31 0 7 1045 262 294 40 59 chr9 60334890 60334947 -63741225 - RMER12 LTR ERVK -529 793 744 7 1045 296 255 42 21 chr9 60335135 60335231 -63740941 + MIRc SINE MIR 84 181 -87 7 1045 180 0 0 0 chr9 60335594 60335614 -63740558 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 7 1045 345 320 8 15 chr9 60335742 60335872 -63740300 + B4 SINE B4 2 130 -162 7 1045 387 218 21 0 chr9 60335891 60336033 -63740139 + (CA)n Simple_repeat Simple_repeat 2 146 0 7 1045 219 291 194 0 chr9 60336044 60336147 -63740025 + L2a LINE L2 3304 3426 0 7 1045 195 100 0 0 chr9 60337051 60337081 -63739091 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1045 362 225 28 0 chr9 60337575 60337646 -63738526 + ID_B1 SINE B4 150 222 -2 7 1045 231 146 0 0 chr9 60337658 60337699 -63738473 + (GGA)n Simple_repeat Simple_repeat 2 42 0 7 1045 286 222 0 0 chr9 60337983 60338037 -63738135 - ID_B1 SINE B4 -60 164 111 7 1045 627 233 55 45 chr9 60338465 60338685 -63737487 + ID_B1 SINE B4 1 222 -2 7 1045 307 183 12 12 chr9 60338689 60338772 -63737400 + GA-rich Low_complexity Low_complexity 2 84 0 7 1045 1221 242 113 43 chr9 60339431 60339846 -63736326 + Tigger13a DNA MER2_type 303 746 -25 7 1045 260 327 85 19 chr9 60340040 60340146 -63736026 - PB1D10 SINE Alu -4 113 1 7 1045 268 266 0 15 chr9 60340191 60340256 -63735916 + CT-rich Low_complexity Low_complexity 2 65 0 7 1045 520 335 96 43 chr9 60340391 60340859 -63735313 - MamRep1161 DNA TcMar -309 648 156 7 1045 759 258 100 26 chr9 60340931 60341202 -63734970 + B4A SINE B4 2 292 0 7 1045 379 266 124 0 chr9 60341985 60342098 -63734074 + RSINE1 SINE B4 3 129 -36 7 1045 323 119 15 0 chr9 60342098 60342165 -63734007 + (TC)n Simple_repeat Simple_repeat 1 68 0 7 1045 857 287 28 28 chr9 60342905 60343120 -63733052 + ID_B1 SINE B4 6 220 -4 7 1045 32 0 0 23 chr9 60343915 60343937 -63732235 + AT_rich Low_complexity Low_complexity 1 22 0 7 1045 335 244 297 8 chr9 60343937 60344065 -63732107 - RSINE1 SINE B4 0 165 1 7 1045 32 0 0 23 chr9 60344065 60344085 -63732087 + AT_rich Low_complexity Low_complexity 1 20 0 7 1045 286 357 118 8 chr9 60344097 60344224 -63731948 - ID_B1 SINE B4 -28 196 56 7 1045 282 260 27 0 chr9 60344797 60344870 -63731302 - ID4 SINE ID -1 82 8 7 1045 554 243 0 141 chr9 60345118 60345295 -63730877 + RSINE1 SINE B4 14 165 0 7 1045 1340 267 33 44 chr9 60345416 60345655 -63730517 + MTEa LTR MaLR 1 232 -147 7 1045 1917 152 87 16 chr9 60345655 60346022 -63730150 + ORR1B1 LTR MaLR 2 394 0 7 1045 1340 267 33 44 chr9 60346022 60346143 -63730029 + MTEa LTR MaLR 233 357 -22 7 1045 198 294 85 21 chr9 60346152 60346246 -63729926 + MIRb SINE MIR 64 163 -105 7 1045 198 91 0 0 chr9 60346348 60346381 -63729791 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 7 1045 1192 68 0 0 chr9 60346382 60346529 -63729643 - B1_Mus1 SINE Alu -1 147 1 7 1045 504 259 97 29 chr9 60346529 60346736 -63729436 + L1MB8 LINE L1 5896 6116 -62 7 1045 2238 187 52 69 chr9 60346870 60347433 -63728739 + RLTR31_Mur LTR ERVK 1 553 0 7 1045 694 302 57 0 chr9 60347438 60347630 -63728542 + ID_B1 SINE B4 2 204 -20 7 1045 343 227 66 36 chr9 60348668 60348786 -63727386 - ID_B1 SINE B4 -166 126 5 7 1045 313 274 105 40 chr9 60348877 60349029 -63727143 + Charlie7 DNA MER1_type 2417 2578 -34 7 1045 341 179 193 45 chr9 60349094 60349182 -63726990 - PB1D10 SINE Alu -3 124 24 7 1045 402 280 37 29 chr9 60349303 60349439 -63726733 + MER112 DNA MER1_type 4 140 -121 7 1045 818 224 76 5 chr9 60350849 60350954 -63725218 - RMER30 DNA MER1_type 0 202 84 7 1045 243 0 0 0 chr9 60350954 60350981 -63725191 + (ATTG)n Simple_repeat Simple_repeat 1 27 0 7 1045 818 224 76 5 chr9 60350981 60351059 -63725113 - RMER30 DNA MER1_type -119 83 7 7 1045 346 279 0 0 chr9 60351397 60351465 -63724707 - B4A SINE B4 -8 284 217 7 1045 237 65 0 0 chr9 60351490 60351521 -63724651 + (TTG)n Simple_repeat Simple_repeat 2 32 0 7 1045 606 118 0 0 chr9 60351522 60351615 -63724557 + (TTC)n Simple_repeat Simple_repeat 3 95 0 7 1045 488 340 29 41 chr9 60351653 60351895 -63724277 - B4A SINE B4 -52 240 2 7 1045 765 254 37 10 chr9 60351895 60352102 -63724070 - B4A SINE B4 -62 230 25 7 1045 402 21 0 0 chr9 60353705 60353752 -63722420 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1045 736 72 9 18 chr9 60354380 60354493 -63721679 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 7 1045 440 319 45 35 chr9 60355302 60355564 -63720608 + B4A SINE B4 1 269 -23 7 1045 351 0 0 0 chr9 60355564 60355603 -63720569 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1045 440 319 45 35 chr9 60355603 60355629 -63720543 + B4A SINE B4 270 292 0 7 1045 346 315 0 0 chr9 60355762 60355851 -63720321 + PB1D10 SINE Alu 22 110 -7 7 1045 396 277 156 4 chr9 60355957 60356182 -63719990 - L1MDa LINE L1 -5064 1569 1311 7 1045 1443 301 89 13 chr9 60356187 60357291 -63718881 + L1MA7 LINE L1 5008 6220 -80 7 1045 265 300 33 0 chr9 60357372 60357432 -63718740 + ID4_ SINE ID 16 77 -6 7 1045 205 169 16 33 chr9 60357454 60357515 -63718657 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 7 1045 403 112 51 0 chr9 60357564 60357662 -63718510 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 7 1045 818 289 104 17 chr9 60357665 60358010 -63718162 - L1MDa LINE L1 -5357 1276 902 7 1045 355 206 0 0 chr9 60359372 60359435 -63716737 - MER2 DNA MER2_type -57 288 226 7 1045 441 214 0 0 chr9 60359435 60359533 -63716639 + (TA)n Simple_repeat Simple_repeat 2 99 0 7 1045 558 272 60 62 chr9 60359588 60359821 -63716351 - MER2 DNA MER2_type -59 277 52 7 1045 719 185 52 0 chr9 60359821 60359956 -63716216 + B1_Mus1 SINE Alu 1 142 -6 7 1045 324 0 0 0 chr9 60359981 60360017 -63716155 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1045 633 49 0 0 chr9 60360095 60360176 -63715996 + (TA)n Simple_repeat Simple_repeat 2 82 0 7 1045 566 296 121 9 chr9 60360354 60360670 -63715502 + ORR1D2 LTR MaLR 9 364 -6 7 1045 300 225 0 0 chr9 60360817 60360946 -63715226 + GA-rich Low_complexity Low_complexity 2 130 0 7 1045 325 316 25 33 chr9 60360997 60361009 -63715163 + MER58B DNA MER1_type 160 172 -169 7 1045 617 296 21 5 chr9 60361009 60361199 -63714973 - B3A SINE B2 -5 193 1 7 1045 444 347 12 6 chr9 60361199 60361367 -63714805 + MER58B DNA MER1_type 173 341 0 7 1045 414 0 0 0 chr9 60361949 60361995 -63714177 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1045 591 267 52 31 chr9 60362100 60362293 -63713879 - B3A SINE B2 0 198 2 7 1045 566 294 83 70 chr9 60362306 60362606 -63713566 + ORR1E LTR MaLR 51 354 -5 7 1045 1155 7 0 0 chr9 60363321 60363456 -63712716 + B1_Mus1 SINE Alu 14 148 0 7 1045 455 118 0 13 chr9 60363461 60363538 -63712634 + (GAGAA)n Simple_repeat Simple_repeat 4 79 0 7 1045 928 157 86 43 chr9 60363551 60363737 -63712435 + B3A SINE B2 5 198 0 7 1045 225 0 0 0 chr9 60363794 60363819 -63712353 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1045 309 181 41 14 chr9 60363902 60363975 -63712197 + MTC LTR MaLR 344 418 -3 7 1045 373 255 10 31 chr9 60363975 60364066 -63712106 + B4A SINE B4 204 292 0 7 1045 640 104 17 9 chr9 60364071 60364187 -63711985 + (CATA)n Simple_repeat Simple_repeat 4 120 0 7 1045 440 164 24 37 chr9 60364683 60364765 -63711407 + ID4_ SINE ID 2 82 -1 7 1045 249 313 98 38 chr9 60365459 60365592 -63710580 - MIR SINE MIR -91 171 31 7 1045 211 94 31 0 chr9 60366762 60366794 -63709378 - MIRm SINE MIR -20 256 224 7 1045 243 0 0 0 chr9 60367192 60367219 -63708953 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1045 342 0 0 0 chr9 60367483 60367521 -63708651 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1045 319 285 43 17 chr9 60367576 60367703 -63708469 + L2b LINE L2 3263 3417 -9 7 1045 306 379 76 0 chr9 60369404 60369549 -63706623 + HAL1-3A_ME LINE L1 2284 2439 -419 7 1045 562 248 33 31 chr9 60371041 60371196 -63704976 + ID_B1 SINE B4 73 224 -68 7 1045 375 315 9 9 chr9 60371196 60371308 -63704864 + PB1D10 SINE Alu 1 112 -5 7 1045 356 215 25 0 chr9 60371320 60371399 -63704773 + ID4_ SINE ID 2 82 -1 7 1045 712 189 150 23 chr9 60371521 60371652 -63704520 + B3A SINE B2 4 149 -49 7 1045 225 0 0 0 chr9 60371652 60371677 -63704495 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1045 369 0 0 0 chr9 60371677 60371717 -63704455 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1045 712 189 150 23 chr9 60371717 60371757 -63704415 + B3A SINE B2 150 197 -1 7 1045 619 199 0 22 chr9 60371886 60372066 -63704106 + (TATG)n Simple_repeat Simple_repeat 4 179 0 7 1045 319 205 179 0 chr9 60372259 60372337 -63703835 - L1MC4a LINE L1 -1188 6694 6603 7 1045 1086 162 0 0 chr9 60372348 60372521 -63703651 - B2_Mm2 SINE B2 -18 177 5 7 1045 357 194 192 10 chr9 60373465 60373564 -63702608 + MTEa LTR MaLR 7 123 -256 7 1045 618 178 0 9 chr9 60373642 60373750 -63702422 + RSINE1 SINE B4 2 108 -57 7 1045 24 32 0 0 chr9 60374818 60374849 -63701323 + AT_rich Low_complexity Low_complexity 1 31 0 8 1045 266 314 29 0 chr9 60375446 60375516 -63700656 - B4 SINE B4 -5 287 216 8 1045 971 252 30 0 chr9 60375519 60375721 -63700451 - B3 SINE B2 -3 213 6 8 1045 822 241 12 6 chr9 60375712 60375879 -63700293 - B4A SINE B4 -55 237 70 8 1045 23 33 0 0 chr9 60376276 60376306 -63699866 + AT_rich Low_complexity Low_complexity 1 30 0 8 1045 183 42 0 0 chr9 60376727 60376751 -63699421 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1045 708 191 30 0 chr9 60376756 60376887 -63699285 - B1_Mus1 SINE Alu -13 135 1 8 1045 387 0 0 0 chr9 60376981 60377024 -63699148 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1045 226 283 149 9 chr9 60377822 60377929 -63698243 + MIRm SINE MIR 40 161 -115 8 1045 383 267 0 0 chr9 60378664 60378754 -63697418 + MLT1I LTR MaLR 43 132 -279 8 1045 266 236 287 47 chr9 60378854 60378983 -63697189 + MLT1I LTR MaLR 230 389 -22 8 1045 255 284 0 24 chr9 60379777 60379860 -63696312 - B4A SINE B4 0 292 212 8 1045 1317 231 29 11 chr9 60379851 60380131 -63696041 + RMER4A LTR ERVK 27 311 -155 8 1045 309 340 52 0 chr9 60380150 60380247 -63695925 + MER21B LTR ERV1 126 227 -636 8 1045 459 331 85 11 chr9 60380525 60380714 -63695458 + MER21B LTR ERV1 606 808 -55 8 1045 597 234 170 20 chr9 60381143 60381396 -63694776 + B4A SINE B4 2 292 0 8 1045 505 200 105 0 chr9 60381838 60381943 -63694229 - RSINE1 SINE B4 -36 129 14 8 1045 5942 115 9 0 chr9 60381959 60382971 -63693201 - Lx LINE L1 -681 5955 4936 8 1045 3309 100 12 31 chr9 60382961 60383447 -63692725 + Lx LINE L1 5959 6435 -219 8 1045 192 77 0 0 chr9 60384103 60384129 -63692043 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 8 1045 409 217 127 15 chr9 60384138 60384253 -63691919 + PB1 SINE Alu 1 127 0 8 1045 263 327 0 65 chr9 60384568 60384676 -63691496 + ORR1A3 LTR MaLR 39 139 -187 8 1045 364 252 9 19 chr9 60384690 60384795 -63691377 + (CA)n Simple_repeat Simple_repeat 2 105 0 8 1045 335 348 36 24 chr9 60384911 60385076 -63691096 + L1MEf LINE L1 782 948 -5294 8 1045 216 341 35 35 chr9 60385086 60385171 -63691001 + B4 SINE B4 7 91 -201 8 1045 501 320 37 52 chr9 60385175 60385445 -63690727 + Lx7 LINE L1 7094 7359 -337 8 1045 247 283 34 34 chr9 60385529 60385646 -63690526 + Lx7 LINE L1 7578 7694 -2 8 1045 763 224 114 6 chr9 60385660 60385835 -63690337 + B4A SINE B4 97 290 -2 8 1045 355 256 11 0 chr9 60385838 60386014 -63690158 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 1045 470 307 72 52 chr9 60386088 60386569 -63689603 + L1MEf LINE L1 1033 1572 -4594 8 1045 383 261 103 71 chr9 60386580 60386875 -63689297 + B4A SINE B4 5 285 -7 8 1045 1014 164 0 1 chr9 60386876 60387665 -63688507 + (CA)n Simple_repeat Simple_repeat 1 788 0 8 1045 873 170 0 0 chr9 60387695 60387922 -63688250 + (CA)n Simple_repeat Simple_repeat 1 227 0 8 1045 352 74 18 36 chr9 60387925 60387981 -63688191 + HAL1-3A_ME LINE L1 1975 2029 -829 8 1045 275 318 30 15 chr9 60388415 60388546 -63687626 - L1MEf LINE L1 -4534 1666 1534 8 1045 337 270 39 19 chr9 60388571 60388695 -63687477 - MTD LTR MaLR -204 175 50 8 1045 289 279 13 0 chr9 60388677 60388756 -63687416 - MTD LTR MaLR -244 175 96 8 1045 524 203 139 7 chr9 60388754 60388898 -63687274 - MTD LTR MaLR -244 175 13 8 1045 285 271 163 11 chr9 60388909 60389099 -63687073 + L1MEf LINE L1 2492 2710 -3436 8 1045 272 333 31 10 chr9 60390164 60390261 -63685911 - PB1D10 SINE Alu -13 104 6 8 1045 231 36 0 0 chr9 60390285 60390313 -63685859 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 8 1045 535 283 14 28 chr9 60390323 60390465 -63685707 - RSINE1 SINE B4 -22 143 4 8 1045 573 227 57 46 chr9 60390594 60390743 -63685429 + B3A SINE B2 2 154 -44 8 1045 306 0 0 0 chr9 60390743 60390777 -63685395 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1045 573 227 57 46 chr9 60390777 60390821 -63685351 + B3A SINE B2 155 197 -1 8 1045 438 299 82 34 chr9 60390841 60391049 -63685123 + MER2 DNA MER2_type 86 303 -42 8 1045 715 259 67 5 chr9 60392049 60392243 -63683929 + ID_B1 SINE B4 1 206 -18 8 1045 734 296 96 38 chr9 60394289 60394738 -63681434 - RMER5 LTR ERV1 -15 519 45 8 1045 1073 151 132 29 chr9 60395031 60395236 -63680936 + URR1A DNA MER1_type 1 226 0 8 1045 285 204 815 34 chr9 60395860 60395979 -63680193 + B4A SINE B4 21 232 -60 8 1045 320 64 21 0 chr9 60396979 60397026 -63679146 + (TATG)n Simple_repeat Simple_repeat 1 48 0 8 1045 6218 41 0 1 chr9 60397614 60398351 -63677821 - L1Md_T LINE L1 -1 6581 5846 8 1045 5776 19 6 0 chr9 60398351 60399028 -63677144 + L1_Mm LINE L1 2964 3644 -2239 8 1045 342 0 0 0 chr9 60399106 60399144 -63677028 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1045 810 188 131 0 chr9 60399144 60399320 -63676852 + B3 SINE B2 11 209 -7 8 1045 735 152 0 0 chr9 60399390 60399535 -63676637 + (CA)n Simple_repeat Simple_repeat 1 145 0 8 1045 917 212 22 0 chr9 60399754 60399933 -63676239 - B3 SINE B2 0 216 34 8 1045 198 0 0 0 chr9 60399933 60399955 -63676217 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 8 1045 867 44 0 0 chr9 60399955 60400068 -63676104 - B1_Mus2 SINE Alu -3 144 32 8 1045 239 125 50 0 chr9 60400071 60400111 -63676061 - B3A SINE B2 -156 42 1 8 1045 222 379 0 77 chr9 60400200 60400343 -63675829 + MIRm SINE MIR 20 151 -125 8 1045 559 232 210 24 chr9 60400524 60400825 -63675347 + MTE2a LTR MaLR 13 368 -11 8 1045 544 297 21 21 chr9 60400897 60401038 -63675134 - RSINE1 SINE B4 -5 160 20 8 1045 486 279 43 35 chr9 60401398 60401480 -63674692 + B4 SINE B4 133 220 -72 8 1045 438 53 0 0 chr9 60401480 60401537 -63674635 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1045 486 279 43 35 chr9 60401537 60401595 -63674577 + B4 SINE B4 221 274 -18 8 1045 3552 15 5 0 chr9 60401623 60402017 -63674155 + MTA_Mm LTR MaLR 1 396 0 8 1045 327 25 0 0 chr9 60402051 60402091 -63674081 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1045 827 325 79 12 chr9 60402093 60402522 -63673650 - MER68 LTR ERVL -97 466 9 8 1045 1033 211 48 52 chr9 60402717 60402987 -63673185 + Lx8 LINE L1 7148 7416 -57 8 1045 1403 152 7 44 chr9 60403004 60403279 -63672893 + RMER19B LTR ERVK 47 311 -591 8 1045 713 95 78 0 chr9 60403279 60403395 -63672777 + RMER19B LTR ERVK 777 901 -1 8 1045 8185 156 35 31 chr9 60403436 60405170 -63671002 + Lx5 LINE L1 5308 7049 -1 8 1045 383 260 101 79 chr9 60405634 60405949 -63670223 + MTEa LTR MaLR 3 372 -7 8 1045 270 0 0 0 chr9 60406083 60406113 -63670059 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1045 396 0 0 0 chr9 60406113 60406156 -63670016 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1045 414 309 0 0 chr9 60407032 60407126 -63669046 + PB1D10 SINE Alu 11 104 -13 8 1045 288 120 0 0 chr9 60407126 60407176 -63668996 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 8 1045 462 18 0 0 chr9 60407177 60407232 -63668940 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1045 978 230 73 46 chr9 60407757 60408125 -63668047 + MTD LTR MaLR 6 405 -14 8 1045 253 335 95 28 chr9 60408136 60408571 -63667601 + L2a LINE L2 2870 3343 -83 8 1045 482 319 7 28 chr9 60408645 60408787 -63667385 - RSINE1 SINE B4 -17 148 10 8 1045 772 230 52 19 chr9 60409759 60409972 -63666200 + B4 SINE B4 1 220 -72 8 1045 297 0 0 0 chr9 60410038 60410071 -63666101 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1045 234 0 0 0 chr9 60410083 60410109 -63666063 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1045 350 283 92 61 chr9 60411330 60411526 -63664646 + B3 SINE B2 1 202 -14 8 1045 227 273 12 61 chr9 60411597 60411679 -63664493 - RSINE1 SINE B4 0 165 88 8 1045 344 309 100 11 chr9 60412352 60412542 -63663630 - L1M5 LINE L1 -2230 3916 3710 8 1045 192 40 0 0 chr9 60412572 60412597 -63663575 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1045 819 212 19 0 chr9 60412598 60412758 -63663414 - B3A SINE B2 -34 164 2 8 1045 503 298 125 33 chr9 60412766 60413165 -63663007 - L1MD LINE L1 -2452 3694 3259 8 1045 404 128 0 13 chr9 60413174 60413253 -63662919 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 1045 547 309 78 41 chr9 60413277 60413547 -63662625 - B4A SINE B4 -5 287 8 8 1045 396 0 0 0 chr9 60413701 60413745 -63662427 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1045 830 191 0 0 chr9 60413755 60413902 -63662270 - B3 SINE B2 -67 149 3 8 1045 221 259 187 29 chr9 60413953 60413982 -63662190 - B4 SINE B4 -37 255 95 8 1045 342 193 43 53 chr9 60413982 60414092 -63662080 - PB1D7 SINE Alu -2 118 10 8 1045 301 329 98 0 chr9 60414187 60414330 -63661842 - RSINE1 SINE B4 -6 159 3 8 1045 398 313 121 26 chr9 60414493 60414841 -63661331 - L1MD LINE L1 -3336 2810 2430 8 1045 235 91 0 0 chr9 60415120 60415153 -63661019 - PB1D9 SINE Alu -87 33 1 8 1045 708 311 107 3 chr9 60416154 60416454 -63659718 + MLT1A0 LTR MaLR 19 349 -16 8 1045 303 111 0 0 chr9 60416799 60416844 -63659328 + B2_Mm2 SINE B2 2 46 -149 8 1045 197 224 17 0 chr9 60416889 60416947 -63659225 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1045 287 265 96 22 chr9 60417154 60417307 -63658865 - L1MC4 LINE L1 -945 6937 6779 8 1045 885 222 53 5 chr9 60417437 60417627 -63658545 + ID_B1 SINE B4 1 199 -25 8 1045 675 288 38 48 chr9 60418427 60418706 -63657466 + B4A SINE B4 3 292 0 8 1045 387 0 0 0 chr9 60418823 60418866 -63657306 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1045 242 362 52 0 chr9 60419038 60419154 -63657018 - Tigger8 DNA MER2_type -456 210 89 8 1045 1482 164 108 86 chr9 60419209 60419617 -63656555 + MTD LTR MaLR 3 419 0 8 1045 330 153 0 27 chr9 60419755 60419829 -63656343 - RMER19C LTR ERVK -539 72 1 8 1045 640 162 201 53 chr9 60419984 60420153 -63656019 + B3A SINE B2 3 196 -2 8 1045 908 254 0 5 chr9 60420376 60420590 -63655582 + B3 SINE B2 1 213 -3 8 1045 511 342 168 21 chr9 60420596 60421223 -63654949 + Charlie25 DNA MER1_type 619 1337 -1187 8 1045 333 0 0 0 chr9 60421301 60421338 -63654834 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1045 1160 231 37 30 chr9 60421358 60421626 -63654546 - B4A SINE B4 -21 271 2 9 1045 226 241 71 44 chr9 60421786 60421837 -63654335 + Lx8 LINE L1 6914 6967 -506 9 1045 405 95 0 0 chr9 60421837 60421900 -63654272 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1045 238 292 0 0 chr9 60421900 60421972 -63654200 + Lx7 LINE L1 6956 7027 -669 9 1045 449 231 19 0 chr9 60421987 60422091 -63654081 + Lx7 LINE L1 7220 7325 -371 9 1045 207 186 0 0 chr9 60423336 60423379 -63652793 + A-rich Low_complexity Low_complexity 2 44 0 9 1045 379 296 9 9 chr9 60423384 60423500 -63652672 + PB1D7 SINE Alu 2 117 -3 9 1045 280 271 81 23 chr9 60423635 60423722 -63652450 - LTR52 LTR ERVL -3 418 327 9 1045 344 183 48 24 chr9 60423753 60423837 -63652335 + L1M5 LINE L1 2849 2934 -3212 9 1045 338 285 143 16 chr9 60423901 60424090 -63652082 + L1M5 LINE L1 3696 3908 -2238 9 130 895 265 106 51 chr9 60424067 60424537 -63651635 - L1MB7 LINE L1 -59 6125 5630 9 1046 21 0 0 0 chr9 60424590 60424611 -63651561 + AT_rich Low_complexity Low_complexity 1 21 0 9 1046 1538 215 86 17 chr9 60424648 60425065 -63651107 - RLTR20B3 LTR ERVK -65 512 67 9 1046 259 278 14 57 chr9 60425399 60425540 -63650632 + L1M5 LINE L1 4115 4249 -1897 9 1046 629 343 6 78 chr9 60425602 60425934 -63650238 + MER82 DNA MER2_type 22 329 -324 9 1046 216 0 0 0 chr9 60425960 60425984 -63650188 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 9 1046 936 82 82 0 chr9 60425984 60426130 -63650042 - B2_Mm2 SINE B2 -36 159 2 9 1046 800 306 58 6 chr9 60426130 60426423 -63649749 + MER82 DNA MER2_type 343 652 -1 9 1046 1155 254 29 7 chr9 60426561 60426839 -63649333 - B4A SINE B4 -5 287 4 9 1046 385 336 31 53 chr9 60427328 60427686 -63648486 + L1M5 LINE L1 4610 4959 -1187 9 1046 426 257 71 45 chr9 60427691 60427713 -63648459 + ID_B1 SINE B4 66 224 0 9 1046 507 215 98 23 chr9 60427713 60427846 -63648326 + B1F SINE Alu 7 149 0 9 1046 878 113 215 0 chr9 60427934 60428111 -63648061 - URR1B DNA MER1_type -10 215 1 9 1046 1356 236 73 33 chr9 60428886 60429285 -63646887 - MTD LTR MaLR -4 415 1 9 1046 194 33 0 62 chr9 60429408 60429440 -63646732 + (CATA)n Simple_repeat Simple_repeat 1 30 0 9 1046 264 248 5 10 chr9 60429521 60429721 -63646451 + (CA)n Simple_repeat Simple_repeat 1 198 0 9 1046 412 329 0 0 chr9 60429902 60430057 -63646115 + (TG)n Simple_repeat Simple_repeat 2 156 0 9 1046 1231 48 0 0 chr9 60430081 60430228 -63645944 - B1_Mus1 SINE Alu 0 148 2 9 1046 291 312 70 31 chr9 60430859 60430988 -63645184 - L4 LINE RTE -94 1935 1802 9 1046 774 226 135 81 chr9 60431289 60431549 -63644623 + B4A SINE B4 2 275 -17 9 1046 486 46 0 0 chr9 60431561 60431626 -63644546 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 1046 1075 68 7 39 chr9 60431742 60431895 -63644277 + B1_Mus1 SINE Alu 1 148 0 9 1046 243 356 37 6 chr9 60432176 60432340 -63643832 + L2 LINE L2 2592 2760 -659 9 1046 851 76 0 0 chr9 60432510 60432628 -63643544 - B1_Mus1 SINE Alu 0 148 31 9 1046 430 252 0 10 chr9 60432742 60432846 -63643326 + RSINE1 SINE B4 34 136 -29 9 1046 228 67 0 0 chr9 60432853 60432883 -63643289 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1046 2369 136 74 0 chr9 60433307 60433674 -63642498 + ORR1B1 LTR MaLR 1 394 0 9 1046 303 206 13 52 chr9 60436303 60436380 -63639792 + BC1_Mm scRNA scRNA 1 74 -78 9 1046 225 0 0 0 chr9 60436383 60436408 -63639764 + (TC)n Simple_repeat Simple_repeat 1 25 0 9 1046 1176 75 0 7 chr9 60436550 60436689 -63639483 + B1_Mus1 SINE Alu 1 139 -9 9 1046 224 0 65 0 chr9 60436689 60436720 -63639452 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 9 1046 270 321 27 0 chr9 60437260 60437372 -63638800 - MIRc SINE MIR -152 116 2 9 1046 1715 209 39 0 chr9 60437874 60438257 -63637915 + MTD LTR MaLR 20 417 -2 9 1046 998 121 74 11 chr9 60438420 60438595 -63637577 + B2_Mm2 SINE B2 2 187 -8 9 1046 902 300 9 120 chr9 60438693 60439019 -63637153 - B4A SINE B4 -2 290 1 9 1046 502 287 132 0 chr9 60439171 60439345 -63636827 - B3A SINE B2 0 198 2 9 1046 435 184 0 0 chr9 60439655 60439742 -63636430 + (CATA)n Simple_repeat Simple_repeat 2 88 0 9 1046 432 0 0 0 chr9 60439743 60439791 -63636381 + (TTA)n Simple_repeat Simple_repeat 1 48 0 9 1046 287 138 0 33 chr9 60440438 60440498 -63635674 + CT-rich Low_complexity Low_complexity 4 61 0 9 1046 252 0 0 0 chr9 60441187 60441215 -63634957 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1046 273 29 0 0 chr9 60441262 60441296 -63634876 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1046 306 0 0 0 chr9 60441343 60441377 -63634795 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1046 325 253 33 11 chr9 60441737 60441829 -63634343 - PB1D9 SINE Alu -9 111 18 9 1046 338 52 0 33 chr9 60442293 60442353 -63633819 + B3 SINE B2 157 214 -2 9 1046 507 90 0 0 chr9 60442387 60442465 -63633707 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1046 1236 264 91 5 chr9 60443360 60443733 -63632439 - MTD LTR MaLR -1 418 14 9 1046 1300 107 37 0 chr9 60443935 60444122 -63632050 + B2_Mm2 SINE B2 2 195 0 9 1046 541 155 27 7 chr9 60444982 60445131 -63631041 + (TG)n Simple_repeat Simple_repeat 1 152 0 9 1046 1039 229 22 65 chr9 60445131 60445407 -63630765 - B4A SINE B4 0 292 29 9 1046 270 0 0 0 chr9 60445511 60445541 -63630631 + (TATG)n Simple_repeat Simple_repeat 1 30 0 9 1046 295 273 10 5 chr9 60446301 60446510 -63629662 + (TG)n Simple_repeat Simple_repeat 1 210 0 9 1046 219 254 11 34 chr9 60446470 60446649 -63629523 + (TATG)n Simple_repeat Simple_repeat 4 178 0 9 1046 550 296 104 19 chr9 60446729 60446997 -63629175 - B4A SINE B4 -1 291 1 9 1046 477 282 42 28 chr9 60447047 60447259 -63628913 - B4A SINE B4 -76 216 2 9 1046 213 350 16 0 chr9 60448834 60448957 -63627215 + (TG)n Simple_repeat Simple_repeat 2 126 0 9 1046 23 54 0 0 chr9 60451031 60451068 -63625104 + AT_rich Low_complexity Low_complexity 1 37 0 9 1046 22 70 0 0 chr9 60451160 60451203 -63624969 + AT_rich Low_complexity Low_complexity 1 43 0 9 1046 253 177 12 12 chr9 60453361 60453441 -63622731 + (TA)n Simple_repeat Simple_repeat 2 81 0 9 1046 277 219 15 59 chr9 60454078 60454146 -63622026 + tRNA-Ala-GCA tRNA tRNA 2 66 -9 9 1046 603 81 0 0 chr9 60454168 60454254 -63621918 + (GA)n Simple_repeat Simple_repeat 2 87 0 9 1046 203 250 129 10 chr9 60454493 60454594 -63621578 + MIRb SINE MIR 117 229 -39 9 1046 21 0 0 0 chr9 60456359 60456380 -63619792 + AT_rich Low_complexity Low_complexity 1 21 0 9 1046 239 350 0 41 chr9 60457514 60457636 -63618536 - ID_B1 SINE B4 0 224 108 9 1046 278 279 92 11 chr9 60457567 60457654 -63618518 - PB1D10 SINE Alu -23 94 1 9 1046 677 222 76 76 chr9 60458630 60458815 -63617357 - B3A SINE B2 -9 186 2 9 1046 1042 195 49 0 chr9 60459302 60459507 -63616665 - B3 SINE B2 0 216 2 9 1046 292 167 28 0 chr9 60459528 60459600 -63616572 + (TG)n Simple_repeat Simple_repeat 2 75 0 9 1046 254 324 0 0 chr9 60459600 60459668 -63616504 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 9 1046 614 270 6 30 chr9 60459669 60459837 -63616335 - RSINE1 SINE B4 0 165 2 9 1046 22 35 0 0 chr9 60461811 60461840 -63614332 + AT_rich Low_complexity Low_complexity 1 29 0 9 1046 1639 275 172 32 chr9 60463262 60464172 -63612000 + L1_Mur3 LINE L1 3714 4751 -1129 9 1046 241 222 27 40 chr9 60464187 60464262 -63611910 + GA-rich Low_complexity Low_complexity 3 76 0 9 1046 180 0 0 0 chr9 60464406 60464426 -63611746 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1046 314 98 0 19 chr9 60465150 60465202 -63610970 + (TATG)n Simple_repeat Simple_repeat 2 52 0 9 1046 474 65 0 0 chr9 60465470 60465532 -63610640 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1046 234 0 0 0 chr9 60465784 60465810 -63610362 + (TA)n Simple_repeat Simple_repeat 2 27 0 9 1046 1553 27 27 0 chr9 60465826 60466009 -63610163 - B2_Mm1a SINE B2 -5 188 1 9 1046 1402 55 22 16 chr9 60466020 60466205 -63609967 - B2_Mm2 SINE B2 -8 187 2 9 1046 560 182 27 0 chr9 60466391 60466501 -63609671 + B1_Mur1 SINE Alu 35 147 -2 9 1046 882 240 79 15 chr9 60466527 60466730 -63609442 + B3 SINE B2 1 216 0 9 1046 326 150 17 0 chr9 60466810 60466870 -63609302 - L1_Mur2 LINE L1 -937 4940 4880 9 1046 1565 113 16 16 chr9 60466870 60467122 -63609050 + Lx2B LINE L1 6737 6988 -12 9 1046 408 40 0 0 chr9 60467195 60467245 -63608927 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1046 269 289 85 49 chr9 60467252 60467416 -63608756 - MER58C DNA MER1_type -45 170 1 9 1046 362 198 216 0 chr9 60469597 60469713 -63606459 - B1F1 SINE Alu -1 148 8 9 1046 268 153 69 0 chr9 60469740 60469804 -63606368 - L1MC3 LINE L1 -26 7759 7700 9 1046 353 307 92 5 chr9 60469878 60470084 -63606088 - L1MC3 LINE L1 -948 6837 6614 9 1046 971 282 205 30 chr9 60470088 60471189 -63604983 - L1MC3 LINE L1 -1303 6482 5222 9 1046 469 244 26 9 chr9 60471225 60471341 -63604831 - RSINE1 SINE B4 -1 164 47 9 1046 289 217 59 24 chr9 60471617 60471702 -63604470 - L1MC3 LINE L1 -1077 5069 4982 9 1046 246 220 0 0 chr9 60473116 60473216 -63602956 + (CA)n Simple_repeat Simple_repeat 2 101 0 9 1046 216 219 24 12 chr9 60473403 60473486 -63602686 + G-rich Low_complexity Low_complexity 2 85 0 9 1046 410 0 20 0 chr9 60473984 60474034 -63602138 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1046 213 94 0 0 chr9 60474034 60474066 -63602106 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 9 1046 204 369 0 0 chr9 60474396 60474480 -63601692 - MER5A DNA MER1_type -86 103 20 9 1046 292 206 297 62 chr9 60475101 60475158 -63601014 + L1MA8 LINE L1 5330 5406 -777 9 1046 555 56 0 0 chr9 60475158 60475229 -63600943 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 9 1046 292 206 297 62 chr9 60475229 60475316 -63600856 + L1MA8 LINE L1 5407 5507 -676 9 1046 689 261 114 8 chr9 60475635 60475890 -63600282 + L1MA8 LINE L1 5504 5785 -527 9 1046 674 266 90 61 chr9 60476009 60476353 -63599819 + L1MA8 LINE L1 5769 6122 -169 9 1046 1170 213 152 6 chr9 60476387 60476717 -63599455 - MTD LTR MaLR 0 419 42 9 1046 673 178 29 29 chr9 60477025 60477164 -63599008 - B1_Mur1 SINE Alu -1 148 10 9 1046 276 235 73 0 chr9 60477410 60477478 -63598694 + MLT1A0 LTR MaLR 38 110 -255 1 1046 414 294 16 81 chr9 60478003 60478207 -63597965 + B3A SINE B2 1 192 -24 1 1046 473 105 0 11 chr9 60478207 60478294 -63597878 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1046 273 331 29 59 chr9 60478294 60478314 -63597858 + B3 SINE B2 193 212 -4 1 1046 652 186 61 48 chr9 60478319 60478466 -63597706 + B1_Mur2 SINE Alu 1 149 0 1 1046 257 270 54 33 chr9 60478529 60478621 -63597551 + LTR79 LTR ERVL 420 513 -14 1 1046 257 270 54 33 chr9 60479557 60479649 -63596523 - LTR79 LTR ERVL -14 513 420 1 1046 289 277 35 24 chr9 60481119 60481204 -63594968 + B3 SINE B2 107 192 -24 1 1046 185 59 0 56 chr9 60481464 60481500 -63594672 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1046 351 0 0 0 chr9 60482155 60482194 -63593978 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1046 401 0 20 0 chr9 60482194 60482242 -63593930 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1046 1227 222 12 0 chr9 60482443 60482686 -63593486 - L1_Rod LINE L1 -2 5845 5600 1 1046 3607 245 97 36 chr9 60482695 60483314 -63592858 + Lx8 LINE L1 6270 6920 -553 1 1046 306 123 0 0 chr9 60483314 60483371 -63592801 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1046 3607 245 97 36 chr9 60483371 60483591 -63592581 + Lx8 LINE L1 6921 7173 -300 1 1046 1066 166 59 36 chr9 60483591 60483810 -63592362 + URR1B DNA MER1_type 1 224 -1 1 1046 3607 245 97 36 chr9 60483810 60484102 -63592070 + Lx8 LINE L1 7174 7471 -2 1 1046 182 159 45 0 chr9 60484898 60484942 -63591230 + CT-rich Low_complexity Low_complexity 3 48 0 1 1046 402 21 0 0 chr9 60485494 60485541 -63590631 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1046 1048 248 9 0 chr9 60485620 60485830 -63590342 - B3 SINE B2 -2 214 3 1 1046 1866 90 11 0 chr9 60485899 60486165 -63590007 + L1_Mus3 LINE L1 6366 6634 -4 1 1046 491 259 66 7 chr9 60486174 60486310 -63589862 + RSINE1 SINE B4 1 144 -21 1 1046 231 114 0 0 chr9 60486325 60486360 -63589812 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1046 685 260 0 20 chr9 60486411 60486564 -63589608 + B3A SINE B2 1 150 -48 1 1046 838 258 62 21 chr9 60487087 60487376 -63588796 + L1MB2 LINE L1 5792 6092 -79 1 1046 866 146 2 11 chr9 60487383 60487551 -63588621 - ORR1B1 LTR MaLR -8 359 177 1 1046 1327 156 40 0 chr9 60487586 60487836 -63588336 - ORR1B1 LTR MaLR -134 260 1 1 1046 7910 161 47 36 chr9 60487836 60489329 -63586843 - ORR1B1-int LTR MaLR 0 1509 1 1 1046 2096 162 26 18 chr9 60489333 60489716 -63586456 - ORR1B1 LTR MaLR -8 386 1 1 1046 2040 131 20 82 chr9 60490033 60490424 -63585748 - ORR1B2 LTR MaLR 0 367 1 1 1046 853 248 117 111 chr9 60490535 60490593 -63585579 + ORR1D1 LTR MaLR 3 40 -334 1 1046 919 165 15 55 chr9 60490593 60490792 -63585380 - B2_Mm2 SINE B2 -4 191 1 1 1046 853 248 117 111 chr9 60490792 60491056 -63585116 + ORR1D1 LTR MaLR 41 333 -41 1 1046 3295 33 10 0 chr9 60491056 60491448 -63584724 - MTA_Mm LTR MaLR 0 396 1 1 1046 853 248 117 111 chr9 60491448 60491492 -63584680 + ORR1D1 LTR MaLR 334 372 -2 1 1046 6471 76 26 23 chr9 60492240 60493943 -63582229 + L1VL2 LINE L1 117 1826 -1789 1 1046 309 296 3 0 chr9 60494087 60494186 -63581986 - PB1D10 SINE Alu -2 118 17 1 1046 378 195 0 0 chr9 60496201 60496283 -63579889 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1046 205 377 11 6 chr9 60498169 60498345 -63577827 + (CGGG)n Simple_repeat Simple_repeat 4 180 0 1 1046 691 273 36 5 chr9 60498860 60499055 -63577117 - B3 SINE B2 -15 201 1 1 1046 1095 117 12 0 chr9 60499071 60499242 -63576930 - B2_Mm1t SINE B2 -20 173 1 1 1046 25 0 0 0 chr9 60499244 60499269 -63576903 + AT_rich Low_complexity Low_complexity 1 25 0 1 1046 656 174 222 10 chr9 60499308 60499511 -63576661 - Lx9 LINE L1 -8 7636 7391 1 1046 3884 69 15 8 chr9 60500000 60500507 -63575665 + L1_Mus3 LINE L1 6112 6624 -14 1 1046 1110 56 7 14 chr9 60500507 60500652 -63575520 + B1_Mm SINE Alu 3 146 -1 2 1046 3884 69 15 8 chr9 60500652 60500713 -63575459 + L1_Mus3 LINE L1 6625 6638 0 1 1046 261 0 0 0 chr9 60500869 60500898 -63575274 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1046 180 0 0 0 chr9 60501891 60501911 -63574261 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1046 1285 63 97 0 chr9 60502640 60502815 -63573357 + L1_Mus1 LINE L1 6376 6567 0 5 1046 279 0 0 0 chr9 60503080 60503111 -63573061 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1046 327 149 0 0 chr9 60503111 60503134 -63573038 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1046 1154 68 0 13 chr9 60503134 60503283 -63572889 - B1_Mus2 SINE Alu 0 147 1 8 1046 327 149 0 0 chr9 60503283 60503326 -63572846 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1046 299 295 79 0 chr9 60503337 60503476 -63572696 + L1ME2 LINE L1 4963 5112 -1034 1 1046 320 135 14 0 chr9 60503600 60503674 -63572498 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 1046 509 269 103 36 chr9 60504354 60504578 -63571594 + L1ME2 LINE L1 5919 6157 -7 1 1046 341 279 57 9 chr9 60505555 60505660 -63570512 - B4A SINE B4 -88 204 95 1 1046 227 190 0 23 chr9 60505659 60505702 -63570470 + RSINE1 SINE B4 88 129 -36 1 1046 198 118 0 0 chr9 60505747 60505781 -63570391 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 1046 341 354 87 13 chr9 60505781 60506010 -63570162 - Kanga1 DNA Tc2 -1134 611 366 1 1046 303 330 3 0 chr9 60506084 60506217 -63569955 - L1MC4 LINE L1 -476 7566 7413 1 1046 241 300 25 0 chr9 60506416 60506496 -63569676 + L1M5 LINE L1 2400 2481 -3665 1 1046 750 308 28 0 chr9 60506709 60506920 -63569252 + B4A SINE B4 65 281 -11 1 1046 423 132 0 0 chr9 60506940 60507008 -63569164 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1046 2868 92 5 26 chr9 60507059 60507484 -63568688 + L1Md_F2 LINE L1 6167 6582 0 2 1046 223 173 38 19 chr9 60507535 60507588 -63568584 + ID4_ SINE ID 22 75 -8 2 1046 25 0 0 0 chr9 60507614 60507639 -63568533 + AT_rich Low_complexity Low_complexity 1 25 0 2 1046 25 65 0 0 chr9 60507998 60508044 -63568128 + AT_rich Low_complexity Low_complexity 1 46 0 2 1046 1478 201 54 115 chr9 60509077 60509634 -63566538 + RLTR11A LTR ERVK 2 524 -4 2 1046 1253 215 61 11 chr9 60509895 60510158 -63566014 - Lx9 LINE L1 -251 7393 7118 2 1046 236 328 50 0 chr9 60510529 60510648 -63565524 + L1M5 LINE L1 5783 5907 -333 2 1046 476 214 19 136 chr9 60511003 60511165 -63565007 - B1F SINE Alu -2 147 5 2 1046 623 243 48 15 chr9 60511422 60511610 -63564562 + B3A SINE B2 2 185 -10 2 1046 472 272 38 0 chr9 60511629 60511761 -63564411 + ID_B1 SINE B4 81 213 -11 2 1046 274 306 0 0 chr9 60511891 60511989 -63564183 + PB1D9 SINE Alu 5 102 -18 3 1046 211 246 70 0 chr9 60512331 60512473 -63563699 + (CAAGC)n Simple_repeat Simple_repeat 1 152 0 3 1046 1187 199 23 0 chr9 60513358 60513574 -63562598 - URR1B DNA MER1_type 0 225 5 3 1046 293 291 64 43 chr9 60513680 60513820 -63562352 - MIR3 SINE MIR -52 156 14 3 1046 631 204 166 0 chr9 60514905 60515062 -63561110 + B3A SINE B2 1 183 -15 3 1046 1702 233 67 0 chr9 60516114 60516505 -63559667 + MTD LTR MaLR 3 419 0 3 1046 1761 173 47 60 chr9 60516628 60517010 -63559162 - RLTR30 LTR ERV1 0 379 3 3 1046 614 206 21 28 chr9 60517114 60517259 -63558913 - RSINE1 SINE B4 -17 148 5 3 1046 1582 252 42 10 chr9 60517753 60518161 -63558011 + MT2A LTR ERVL 4 424 -109 3 1046 2379 146 37 15 chr9 60518195 60518599 -63557573 - MTC LTR MaLR -8 413 1 3 1046 278 100 0 0 chr9 60518599 60518644 -63557528 + MT2A LTR ERVL 487 531 -2 3 1046 260 137 0 19 chr9 60519026 60519078 -63557094 + GA-rich Low_complexity Low_complexity 4 54 0 4 1046 425 258 0 95 chr9 60519390 60519527 -63556645 + PB1 SINE Alu 2 125 -2 4 1046 216 0 0 0 chr9 60520324 60520348 -63555824 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1046 253 225 56 14 chr9 60520490 60520562 -63555610 - MER5A DNA MER1_type 0 189 115 4 1046 297 0 0 0 chr9 60520649 60520682 -63555490 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1046 226 227 27 0 chr9 60520726 60520801 -63555371 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 4 1046 692 268 111 5 chr9 60520917 60521116 -63555056 - B4A SINE B4 -72 220 1 4 1046 209 167 0 40 chr9 60521573 60521623 -63554549 + GA-rich Low_complexity Low_complexity 6 53 0 4 1046 1492 68 16 0 chr9 60521635 60521825 -63554347 - B2_Mm2 SINE B2 -1 194 2 4 1046 717 219 36 57 chr9 60522719 60522913 -63553259 - B3A SINE B2 -8 190 1 4 1046 789 241 16 15 chr9 60523753 60523971 -63552201 + B3A SINE B2 4 216 0 5 1046 244 250 36 0 chr9 60524262 60524318 -63551854 - ID4 SINE ID -8 75 18 5 1046 431 356 22 61 chr9 60524422 60524700 -63551472 + B4A SINE B4 13 279 -13 5 1046 271 252 9 9 chr9 60524712 60524824 -63551348 + (CATATA)n Simple_repeat Simple_repeat 1 112 0 5 1046 714 246 25 15 chr9 60525198 60525400 -63550772 + B3 SINE B2 3 206 -10 5 1046 367 269 107 16 chr9 60526365 60526486 -63549686 + B1_Mus2 SINE Alu 1 132 -15 5 1046 372 276 166 11 chr9 60527549 60527736 -63548436 - L2a LINE L2 -20 3406 3191 5 1046 216 0 0 0 chr9 60528785 60528809 -63547363 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1046 902 187 34 43 chr9 60528872 60529079 -63547093 + B3 SINE B2 4 208 -8 5 1046 1720 26 0 0 chr9 60529209 60529401 -63546771 + B2_Mm1a SINE B2 2 193 0 5 1046 297 0 0 0 chr9 60531856 60531889 -63544283 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 6 1046 192 40 0 0 chr9 60532647 60532672 -63543500 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 6 1046 796 278 22 11 chr9 60533021 60533313 -63542859 + L1MB5 LINE L1 5879 6170 -10 6 1046 655 215 21 2 chr9 60534276 60534437 -63541735 + B3A SINE B2 1 161 -55 6 1046 327 25 0 0 chr9 60534437 60534477 -63541695 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1046 230 243 28 14 chr9 60536665 60536736 -63539436 - MIR3 SINE MIR -13 195 124 6 1046 198 272 252 0 chr9 60537242 60537345 -63538827 + MIR SINE MIR 10 138 -124 6 1046 1345 290 65 23 chr9 60537738 60538250 -63537922 + MT2A LTR ERVL 1 533 0 6 1046 284 327 109 0 chr9 60538599 60538709 -63537463 - MIR3 SINE MIR -20 188 67 6 1046 764 248 0 0 chr9 60538757 60538914 -63537258 + RSINE1 SINE B4 7 163 -2 6 1046 2221 95 12 61 chr9 60539023 60539369 -63536803 + ORR1A4 LTR MaLR 1 329 0 7 1046 561 128 19 19 chr9 60539369 60539477 -63536695 - ORR1B1 LTR MaLR -208 151 43 7 1046 414 253 125 57 chr9 60539612 60539788 -63536384 + B3A SINE B2 5 192 -6 7 1046 29 0 0 0 chr9 60540924 60540953 -63535219 + AT_rich Low_complexity Low_complexity 1 29 0 7 1046 568 275 82 27 chr9 60541732 60541915 -63534257 - B4 SINE B4 -18 274 82 7 1046 429 319 15 54 chr9 60541925 60542135 -63534037 - B3 SINE B2 -4 194 1 7 1046 324 258 67 0 chr9 60542135 60542222 -63533950 - B4 SINE B4 -197 95 3 7 1046 394 201 45 109 chr9 60542458 60542649 -63533523 - RMER4B LTR ERVK -25 560 335 7 1046 759 153 0 0 chr9 60542694 60542825 -63533347 + CT-rich Low_complexity Low_complexity 2 132 0 7 1046 905 142 164 14 chr9 60542832 60543046 -63533126 - RMER4B LTR ERVK -339 246 1 7 1046 1115 156 87 64 chr9 60543079 60543298 -63532874 - URR1B DNA MER1_type -1 224 1 7 1046 370 284 26 8 chr9 60543654 60543771 -63532401 + MER5A DNA MER1_type 2 120 -69 7 1046 440 18 18 0 chr9 60543785 60543842 -63532330 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1046 744 240 182 18 chr9 60543849 60544074 -63532098 - B4 SINE B4 -25 267 6 8 1046 252 0 0 0 chr9 60544865 60544893 -63531279 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1046 1226 55 0 0 chr9 60544896 60545042 -63531130 - B1_Mus2 SINE Alu -1 146 1 8 1046 1423 138 4 18 chr9 60545238 60545467 -63530705 + URR1A DNA MER1_type 1 226 0 8 1046 381 259 26 69 chr9 60545483 60545599 -63530573 + MTEa LTR MaLR 55 165 -214 8 1046 569 190 28 11 chr9 60545600 60545776 -63530396 + GA-rich Low_complexity Low_complexity 1 179 0 8 1046 180 172 0 49 chr9 60545787 60545848 -63530324 + GA-rich Low_complexity Low_complexity 3 60 0 8 1046 374 268 127 25 chr9 60545888 60546045 -63530127 + MTEa LTR MaLR 193 365 -14 8 1046 370 313 31 57 chr9 60546767 60546847 -63529325 + MTD LTR MaLR 18 99 -320 8 1046 306 0 0 0 chr9 60546847 60546881 -63529291 + (TC)n Simple_repeat Simple_repeat 2 35 0 8 1046 270 0 0 0 chr9 60546881 60546910 -63529262 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1046 370 313 31 57 chr9 60546910 60546987 -63529185 + MTD LTR MaLR 100 171 -248 8 1046 245 283 87 17 chr9 60547046 60547161 -63529011 + MTD LTR MaLR 134 256 -144 8 1046 366 100 0 0 chr9 60547162 60547212 -63528960 - MERVL_2A-int LTR ERVL -1156 4605 4556 9 1046 640 219 7 7 chr9 60547218 60547356 -63528816 + MTD LTR MaLR 268 405 -14 8 1046 262 316 7 35 chr9 60547784 60547925 -63528247 - LTR88b LTR Gypsy? -578 259 123 9 1046 408 292 26 34 chr9 60548122 60548239 -63527933 - RSINE1 SINE B4 -2 163 48 9 1046 200 260 80 0 chr9 60548436 60548486 -63527686 + MER5B DNA MER1_type 121 174 -4 9 1046 383 229 56 24 chr9 60548833 60548958 -63527214 - ORR1E LTR MaLR -7 372 244 9 1046 401 228 18 31 chr9 60549012 60549126 -63527046 - ORR1E LTR MaLR -229 141 41 9 1046 662 207 7 35 chr9 60549219 60549364 -63526808 - RSINE1 SINE B4 -22 143 3 9 1046 12621 80 5 3 chr9 60549448 60551868 -63524304 - L1_Mus1 LINE L1 0 6654 4147 9 1046 338 322 65 26 chr9 60552550 60552703 -63523469 - MLT1J LTR MaLR -341 171 13 9 1046 775 228 67 79 chr9 60552707 60552960 -63523212 + Lx8 LINE L1 6898 7147 -326 9 1046 261 0 0 0 chr9 60552985 60553014 -63523158 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1046 604 166 6 6 chr9 60553014 60553178 -63522994 + GA-rich Low_complexity Low_complexity 2 165 0 1 1046 233 69 0 0 chr9 60553179 60553208 -63522964 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 1 1046 254 238 73 16 chr9 60553208 60553332 -63522840 + Lx8 LINE L1 7342 7472 -1 9 1046 707 274 14 18 chr9 60553889 60554108 -63522064 + B4 SINE B4 1 218 -74 1 1046 669 110 0 0 chr9 60554188 60554288 -63521884 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 130 4424 254 67 80 chr9 60554644 60555860 -63520312 + Lx5 LINE L1 5590 6775 -275 1 1047 346 0 40 20 chr9 60555860 60555910 -63520262 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 1 1047 1109 66 0 7 chr9 60555910 60556047 -63520125 - B1_Mm SINE Alu -10 137 2 1 1047 4424 254 67 80 chr9 60556047 60556216 -63519956 + Lx5 LINE L1 6776 6939 -111 1 1047 207 0 0 0 chr9 60556216 60556239 -63519933 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1047 4424 238 72 72 chr9 60556239 60556343 -63519829 + Lx5 LINE L1 6940 7029 -21 1 1047 234 234 0 0 chr9 60556901 60556948 -63519224 - Charlie16a DNA MER1_type -221 121 75 1 1047 317 270 115 101 chr9 60556968 60557134 -63519038 - B4A SINE B4 -1 291 121 1 1047 1329 145 27 9 chr9 60557134 60557356 -63518816 - URR1A DNA MER1_type 0 226 1 1 1047 317 270 115 101 chr9 60557356 60557376 -63518796 - B4A SINE B4 -172 120 102 1 1047 2918 122 118 6 chr9 60557376 60557885 -63518287 - RMER4B LTR ERVK 0 585 20 1 1047 1508 229 89 17 chr9 60558040 60558387 -63517785 + MTEa LTR MaLR 8 379 0 1 1047 865 230 9 67 chr9 60558499 60558709 -63517463 - B3A SINE B2 0 198 1 1 1047 489 17 0 0 chr9 60559092 60559150 -63517022 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1047 1075 199 5 0 chr9 60559258 60559444 -63516728 - B3 SINE B2 -7 209 23 1 1047 506 260 73 0 chr9 60559487 60559610 -63516562 + B1_Mur1 SINE Alu 5 136 -13 1 1047 1058 39 0 8 chr9 60559633 60559764 -63516408 - B1_Mm SINE Alu -10 137 8 1 1047 25 75 0 0 chr9 60559818 60559871 -63516301 + AT_rich Low_complexity Low_complexity 1 53 0 1 1047 281 285 48 16 chr9 60560396 60560521 -63515651 - MER5A1 DNA MER1_type -7 159 31 1 1047 182 125 172 125 chr9 60561318 60561382 -63514790 + MER5A DNA MER1_type 95 161 -28 1 1047 188 388 0 0 chr9 60563323 60563390 -63512782 + L2c LINE L2 3283 3349 -38 1 1047 187 346 84 24 chr9 60563390 60563404 -63512768 + MIRm SINE MIR 157 242 -34 1 1047 1318 286 74 7 chr9 60563903 60564322 -63511850 + RCHARR1 DNA MER1_type 66 512 -462 1 1047 703 265 49 0 chr9 60564287 60564449 -63511723 - B3A SINE B2 -1 197 28 1 1047 237 65 0 0 chr9 60564449 60564480 -63511692 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1 1047 1451 278 60 35 chr9 60564480 60564817 -63511355 + RCHARR1 DNA MER1_type 479 817 -157 1 1047 925 176 121 16 chr9 60564817 60565007 -63511165 + B3 SINE B2 2 211 -5 1 1047 1451 278 60 35 chr9 60565007 60565153 -63511019 + RCHARR1 DNA MER1_type 818 974 0 1 1047 347 276 9 9 chr9 60565452 60565558 -63510614 - L1M2 LINE L1 -2259 3884 3779 1 1047 741 270 2 8 chr9 60565560 60565773 -63510399 - B3A SINE B2 -5 211 1 1 1047 337 272 27 64 chr9 60565794 60565904 -63510268 - PB1 SINE Alu 0 127 22 1 1047 692 298 28 28 chr9 60565940 60566195 -63509977 - L1M2 LINE L1 -2396 3747 3493 1 1047 393 300 57 32 chr9 60566210 60566334 -63509838 - B3 SINE B2 -5 211 85 1 1047 367 279 121 57 chr9 60566497 60566812 -63509360 - L1MC4 LINE L1 -986 7056 6722 1 1047 1031 45 8 0 chr9 60566921 60567053 -63509119 + B2_Mm1t SINE B2 54 186 -7 1 1047 1107 276 172 2 chr9 60568126 60568619 -63507553 + L1MC3 LINE L1 7201 7777 -8 1 1047 346 206 162 0 chr9 60568822 60568890 -63507282 + B4A SINE B4 1 79 -213 1 1047 298 185 131 36 chr9 60568890 60568906 -63507266 + B3A SINE B2 1 92 -106 1 1047 336 303 20 40 chr9 60569181 60569332 -63506840 + B1F SINE Alu 1 148 -1 1 1047 308 265 0 0 chr9 60569354 60569422 -63506750 + ID4 SINE ID 2 69 -14 1 1047 947 242 5 0 chr9 60569746 60569936 -63506236 + ID_B1 SINE B4 9 199 -25 1 1047 281 178 0 22 chr9 60569936 60569982 -63506190 + ID_B1 SINE B4 171 215 -9 1 1047 226 235 99 142 chr9 60570324 60570557 -63505615 + RMER21B LTR ERV1 587 809 -33 1 1047 1293 275 7 4 chr9 60571116 60571393 -63504779 - B4A SINE B4 -2 290 13 1 1047 249 266 36 60 chr9 60571443 60571527 -63504645 - MLT1C LTR MaLR -4 463 382 1 1047 494 330 21 46 chr9 60571685 60571926 -63504246 - MLT1C LTR MaLR -231 236 2 1 1047 186 43 0 0 chr9 60572291 60572314 -63503858 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1047 643 206 200 118 chr9 60572336 60572606 -63503566 + B4 SINE B4 1 292 0 1 1047 3058 21 0 0 chr9 60574022 60574359 -63501813 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1047 54440 21 13 4 chr9 60574359 60580778 -63495394 - IAPEz-int LTR ERVK 0 6481 8 1 1047 3047 24 0 0 chr9 60580778 60581115 -63495057 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1047 1117 311 4 0 chr9 60581118 60581388 -63494784 - MTEb LTR MaLR -108 271 1 1 1047 1055 208 40 0 chr9 60581459 60581661 -63494511 - B3 SINE B2 -6 210 1 1 1047 1546 44 16 0 chr9 60582478 60582661 -63493511 - B2_Mm2 SINE B2 -9 186 1 1 1047 429 235 68 10 chr9 60582803 60582906 -63493266 + PB1D10 SINE Alu 9 117 0 1 1047 353 22 22 0 chr9 60583083 60583129 -63493043 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1047 1118 236 65 11 chr9 60583135 60583397 -63492775 - B4 SINE B4 -16 276 1 1 1047 180 307 147 0 chr9 60583418 60583493 -63492679 - MIRc SINE MIR -89 179 94 1 1047 1262 109 116 24 chr9 60583552 60583759 -63492413 + URR1A DNA MER1_type 1 226 0 1 1047 374 304 9 0 chr9 60583796 60583908 -63492264 + BC1_Mm scRNA scRNA 1 113 -39 1 1047 365 272 13 161 chr9 60583950 60584219 -63491953 + Lx7 LINE L1 5628 5896 -1800 1 1047 231 36 0 0 chr9 60584703 60584731 -63491441 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 1 1047 226 317 24 24 chr9 60586524 60586608 -63489564 - LTR41 LTR ERVL -613 155 72 1 1047 321 299 148 34 chr9 60586545 60586637 -63489535 + MER5A DNA MER1_type 24 128 -61 1 1047 819 234 30 50 chr9 60586637 60586839 -63489333 - B3A SINE B2 0 198 1 1 1047 321 299 148 34 chr9 60586839 60586895 -63489277 + MER5A DNA MER1_type 129 189 0 1 1047 705 97 0 0 chr9 60587412 60587515 -63488657 + (TGG)n Simple_repeat Simple_repeat 1 103 0 1 1047 262 269 30 0 chr9 60587519 60587586 -63488586 - PB1D10 SINE Alu -6 111 43 1 1047 449 267 5 157 chr9 60587677 60587868 -63488304 - RSINE1 SINE B4 -2 163 2 1 1047 616 288 41 47 chr9 60588108 60588279 -63487893 - ID_B1 SINE B4 -34 190 21 1 1047 976 268 66 52 chr9 60589948 60590235 -63485937 - B4 SINE B4 0 292 2 1 1047 222 37 0 0 chr9 60590316 60590343 -63485829 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1047 1058 216 163 28 chr9 60591148 60591467 -63484705 - MTD LTR MaLR -14 405 44 1 1047 651 243 35 6 chr9 60591552 60591722 -63484450 - RCHARR1 DNA MER1_type 0 974 800 1 1047 1588 298 62 39 chr9 60591716 60592340 -63483832 - RCHARR1 DNA MER1_type -303 671 33 1 1047 563 326 31 41 chr9 60593136 60593430 -63482742 + B4A SINE B4 2 292 0 1 1047 450 0 0 0 chr9 60593442 60593492 -63482680 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1047 216 0 0 0 chr9 60594052 60594076 -63482096 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1047 528 274 16 0 chr9 60594087 60594211 -63481961 - RSINE1 SINE B4 -36 129 4 1 1047 182 327 36 0 chr9 60594876 60594931 -63481241 - MIRm SINE MIR -62 214 158 1 1047 241 270 32 0 chr9 60595097 60595160 -63481012 + CT-rich Low_complexity Low_complexity 5 69 0 1 1047 387 191 0 0 chr9 60595215 60595278 -63480894 - RSINE1 SINE B4 -100 65 3 1 1047 2306 129 97 11 chr9 60595816 60596177 -63479995 - ORR1B1 LTR MaLR -2 392 1 1 1047 2109 225 30 68 chr9 60596190 60596616 -63479556 + RLTR11A2 LTR ERVK 9 420 -107 1 1047 934 50 117 0 chr9 60596616 60596736 -63479436 - B1_Mus1 SINE Alu -13 135 2 1 1047 2109 225 30 68 chr9 60596736 60596849 -63479323 + RLTR11A2 LTR ERVK 421 527 0 1 1047 743 257 17 30 chr9 60597000 60597194 -63478978 + B3A SINE B2 16 214 -2 1 1047 207 0 0 0 chr9 60597291 60597314 -63478858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1047 303 330 40 20 chr9 60597512 60597755 -63478417 + L1M4 LINE L1 5591 5842 -342 1 1047 346 336 133 59 chr9 60597800 60598056 -63478116 + B4 SINE B4 1 275 -17 1 1047 309 51 0 0 chr9 60598313 60598352 -63477820 + (TGG)n Simple_repeat Simple_repeat 1 39 0 1 1047 945 205 70 5 chr9 60599225 60599426 -63476746 + B3 SINE B2 3 216 0 1 1047 611 208 46 0 chr9 60599457 60599587 -63476585 + B4 SINE B4 147 282 -10 1 1047 222 91 0 0 chr9 60600096 60600129 -63476043 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1047 223 316 116 0 chr9 60600294 60600389 -63475783 + MIR SINE MIR 34 139 -69 1 1047 286 130 56 0 chr9 60600466 60600520 -63475652 + ID4 SINE ID 2 58 -25 1 1047 885 238 21 21 chr9 60600535 60600724 -63475448 - B3A SINE B2 -5 193 5 1 1047 5478 84 21 1 chr9 60601335 60602089 -63474083 - L1_Mus3 LINE L1 -12 6626 5858 1 1047 2865 112 0 0 chr9 60602092 60602503 -63473669 + L1_Mus3 LINE L1 5454 5864 -19 1 1047 697 318 122 16 chr9 60602633 60602879 -63473293 + B4A SINE B4 1 272 -20 1 1047 645 101 0 0 chr9 60602902 60603001 -63473171 + (TCCA)n Simple_repeat Simple_repeat 2 100 0 1 1047 322 233 0 0 chr9 60603032 60603092 -63473080 + B4 SINE B4 122 181 -111 1 1047 311 0 26 0 chr9 60603108 60603147 -63473025 + (CATA)n Simple_repeat Simple_repeat 2 41 0 1 1047 994 242 99 36 chr9 60603257 60603510 -63472662 - B4A SINE B4 -22 270 2 1 1047 1397 194 132 30 chr9 60603712 60604074 -63472098 + MTD LTR MaLR 2 387 -32 1 1047 190 329 73 0 chr9 60604136 60604218 -63471954 + MIR SINE MIR 161 248 -14 1 1047 183 245 19 58 chr9 60604187 60604239 -63471933 + L2a LINE L2 3376 3425 -1 1 1047 253 302 53 47 chr9 60604827 60604997 -63471175 + B4A SINE B4 36 206 -86 1 1047 270 0 0 0 chr9 60605067 60605097 -63471075 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1047 333 0 0 0 chr9 60605097 60605133 -63471039 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1047 536 278 54 81 chr9 60605163 60605386 -63470786 + B4 SINE B4 66 282 -10 1 1047 379 259 0 0 chr9 60606719 60606800 -63469372 - 5S rRNA rRNA -31 90 10 2 1047 492 18 0 0 chr9 60606845 60606902 -63469270 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1047 243 256 37 49 chr9 60607114 60607196 -63468976 - MER5A DNA MER1_type -44 145 65 2 1047 557 293 58 35 chr9 60607726 60607972 -63468200 + MIR SINE MIR 9 259 -3 2 1047 519 138 0 0 chr9 60608420 60608507 -63467665 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 2 1047 1384 223 23 146 chr9 60608590 60608671 -63467501 + MTE2a LTR MaLR 1 54 -325 2 1047 1168 143 79 28 chr9 60608671 60608886 -63467286 - URR1A DNA MER1_type 0 226 1 2 1047 1384 223 23 146 chr9 60608886 60609235 -63466937 + MTE2a LTR MaLR 55 378 -1 2 1047 2016 158 123 21 chr9 60609960 60610281 -63465891 + MTC LTR MaLR 1 366 -55 2 1047 1923 139 5 120 chr9 60610281 60610649 -63465523 - ORR1A3 LTR MaLR 0 326 1 2 1047 2016 158 123 21 chr9 60610649 60610709 -63465463 + MTC LTR MaLR 367 421 0 2 1047 243 0 0 0 chr9 60611028 60611055 -63465117 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1047 765 257 44 33 chr9 60611538 60611719 -63464453 + B3A SINE B2 1 183 -15 2 1047 218 239 78 107 chr9 60611842 60611879 -63464293 - PB1D10 SINE Alu -1 116 88 2 1047 2458 104 0 0 chr9 60611879 60612205 -63463967 + ORR1A2 LTR MaLR 2 327 0 2 1047 218 239 78 107 chr9 60612205 60612270 -63463902 - PB1D10 SINE Alu -30 87 17 2 1047 568 318 17 29 chr9 60612442 60612617 -63463555 - MLT1H2 LTR MaLR -316 173 1 2 1047 232 293 172 0 chr9 60613337 60613436 -63462736 - MIRm SINE MIR -133 143 28 2 1047 183 204 0 0 chr9 60613876 60613920 -63462252 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1047 300 341 0 83 chr9 60613922 60614018 -63462154 - B4A SINE B4 0 292 205 2 1047 220 333 99 15 chr9 60614314 60614445 -63461727 - MIRc SINE MIR -125 143 2 2 1047 757 238 45 45 chr9 60614597 60614795 -63461377 - B3A SINE B2 0 198 1 2 1047 737 247 45 6 chr9 60615430 60615616 -63460556 - B4 SINE B4 -93 199 3 2 1047 455 0 18 0 chr9 60615762 60615817 -63460355 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2 1047 182 324 68 0 chr9 60617314 60617388 -63458784 - MIR SINE MIR -118 144 66 2 1047 210 37 0 0 chr9 60619502 60619529 -63456643 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1047 255 219 83 111 chr9 60619554 60619698 -63456474 - LTRIS_Mus LTR ERV1 -446 141 2 2 1047 284 325 42 36 chr9 60620102 60620268 -63455904 - RMER15 LTR ERVL -4 571 405 2 1047 2157 138 5 91 chr9 60620664 60621047 -63455125 + ORR1B1 LTR MaLR 41 390 -4 2 1047 668 225 21 115 chr9 60621237 60621428 -63454744 + B3 SINE B2 39 211 -5 2 1047 748 199 123 17 chr9 60622132 60622311 -63453861 - ORR1C2 LTR MaLR -2 382 185 2 1047 441 0 0 0 chr9 60622312 60622361 -63453811 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1047 225 241 155 0 chr9 60622361 60622419 -63453753 - ORR1C2 LTR MaLR -293 81 15 2 1047 601 240 8 37 chr9 60622864 60622998 -63453174 + RSINE1 SINE B4 2 131 -34 2 1047 239 189 38 0 chr9 60622995 60623048 -63453124 - RMER15 LTR ERVL -116 459 405 2 1047 450 0 0 0 chr9 60623070 60623120 -63453052 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1047 369 0 0 0 chr9 60623151 60623192 -63452980 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2 1047 529 308 39 56 chr9 60623775 60624009 -63452163 - Charlie7 DNA MER1_type -2381 231 2 2 1047 644 226 189 81 chr9 60624031 60624291 -63451881 + B4 SINE B4 5 292 0 2 1047 579 316 107 75 chr9 60624341 60624752 -63451420 + MLT1C LTR MaLR 34 457 -10 2 1047 1405 75 16 5 chr9 60625319 60625506 -63450666 + B2_Mm2 SINE B2 1 189 -6 2 1047 23 33 0 0 chr9 60625541 60625571 -63450601 + AT_rich Low_complexity Low_complexity 1 30 0 2 1047 611 275 22 7 chr9 60625745 60625884 -63450288 - RSINE1 SINE B4 -22 143 3 2 1047 326 299 137 25 chr9 60626488 60626649 -63449523 + MLT1D LTR MaLR 319 497 -8 2 1047 447 35 0 0 chr9 60626754 60626811 -63449361 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1047 626 251 51 103 chr9 60626821 60626915 -63449257 - B3 SINE B2 -31 185 101 2 1047 3285 74 2 16 chr9 60626915 60627366 -63448806 - L1Md_F2 LINE L1 0 6582 6138 2 1047 626 251 51 103 chr9 60627366 60627466 -63448706 - B3 SINE B2 -116 100 1 2 1047 304 316 218 53 chr9 60627578 60628160 -63448012 + L2 LINE L2 1830 2507 -912 2 1047 29 28 0 0 chr9 60628173 60628209 -63447963 + AT_rich Low_complexity Low_complexity 1 36 0 2 1047 819 133 0 16 chr9 60628262 60628384 -63447788 - B3 SINE B2 -95 121 2 2 1047 720 228 136 18 chr9 60628384 60628582 -63447590 - MTD LTR MaLR -225 194 1 2 1047 189 328 42 33 chr9 60628627 60628747 -63447425 + L2 LINE L2 2873 2993 -426 2 1047 486 348 7 7 chr9 60629185 60629327 -63446845 + RSINE1 SINE B4 4 145 -20 2 1047 495 0 0 0 chr9 60629361 60629416 -63446756 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 2 1047 251 93 23 0 chr9 60629818 60629861 -63446311 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1047 437 220 62 78 chr9 60630342 60630470 -63445702 + MER63B DNA AcHobo 307 432 -4 2 1047 315 265 35 90 chr9 60630767 60630912 -63445260 + MIRb SINE MIR 121 257 -11 2 1047 472 328 129 30 chr9 60631520 60632054 -63444118 + L2 LINE L2 1897 2483 -936 2 1047 264 30 0 0 chr9 60632631 60632664 -63443508 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2 1047 592 268 82 0 chr9 60633956 60634139 -63442033 - B4A SINE B4 -94 198 1 2 1047 1223 48 7 0 chr9 60634491 60634637 -63441535 - B1_Mm SINE Alu 0 147 1 2 1047 472 254 3 0 chr9 60634639 60634753 -63441419 - PB1D10 SINE Alu -2 115 3 2 1047 433 281 55 67 chr9 60634809 60634973 -63441199 - RSINE1 SINE B4 0 165 4 2 1047 456 19 0 0 chr9 60635154 60635207 -63440965 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2 1047 795 242 139 58 chr9 60635899 60636158 -63440014 + B4 SINE B4 3 282 -10 2 1047 821 172 27 14 chr9 60637227 60637374 -63438798 - B1_Mur4 SINE Alu -1 149 1 2 1047 989 230 0 20 chr9 60637404 60637604 -63438568 + B3A SINE B2 1 196 -2 2 1047 222 37 0 0 chr9 60637719 60637746 -63438426 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1047 633 124 20 10 chr9 60637746 60637844 -63438328 - B1_Mur4 SINE Alu -9 141 43 2 1047 474 163 0 0 chr9 60637844 60637950 -63438222 + (TCTCTG)n Simple_repeat Simple_repeat 1 106 0 2 1047 361 150 0 32 chr9 60637950 60638012 -63438160 - B1_Mur4 SINE Alu -90 60 1 2 1047 858 253 56 67 chr9 60638750 60639034 -63437138 + B4A SINE B4 3 283 -9 2 1047 201 39 0 0 chr9 60639167 60639193 -63436979 + (AGGGGG)n Simple_repeat Simple_repeat 2 27 0 2 1047 538 200 8 25 chr9 60639300 60639418 -63436754 + PB1D10 SINE Alu 1 116 -1 2 1047 318 167 0 0 chr9 60639807 60639867 -63436305 + CT-rich Low_complexity Low_complexity 1 60 0 2 1047 222 231 115 0 chr9 60639869 60639921 -63436251 - PB1D10 SINE Alu -16 101 44 2 1047 1095 232 102 7 chr9 60639928 60640231 -63435941 + ORR1D2 LTR MaLR 39 370 0 2 1047 1553 233 69 6 chr9 60640360 60640709 -63435463 - MTD LTR MaLR -46 373 3 2 1047 24 0 0 0 chr9 60640898 60640922 -63435250 + GC_rich Low_complexity Low_complexity 1 24 0 2 1047 450 49 0 0 chr9 60640968 60641029 -63435143 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1047 679 254 0 0 chr9 60641600 60641742 -63434430 - B3 SINE B2 -71 145 4 2 1047 1252 27 0 7 chr9 60643440 60643588 -63432584 + B1_Mus2 SINE Alu 1 147 0 2 1047 663 241 0 0 chr9 60643617 60643750 -63432422 + ID_B1 SINE B4 84 216 -8 2 1047 180 0 0 0 chr9 60643755 60643775 -63432397 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1047 198 0 0 0 chr9 60644044 60644066 -63432106 + (CTG)n Simple_repeat Simple_repeat 1 22 0 2 1047 23 0 0 0 chr9 60644259 60644282 -63431890 + AT_rich Low_complexity Low_complexity 1 23 0 2 1047 429 20 0 0 chr9 60644413 60644463 -63431709 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1047 342 0 0 0 chr9 60644678 60644716 -63431456 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1047 297 100 0 0 chr9 60644718 60644768 -63431404 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1047 726 96 0 0 chr9 60644833 60644937 -63431235 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 2 1047 585 257 90 0 chr9 60644950 60645094 -63431078 - RSINE1 SINE B4 -4 161 5 2 1047 687 194 59 15 chr9 60645470 60645606 -63430566 - B1_Mur2 SINE Alu -6 143 2 2 1047 789 204 7 14 chr9 60646083 60646227 -63429945 - B1F SINE Alu -1 148 6 2 1047 289 312 79 67 chr9 60646650 60646815 -63429357 - B3A SINE B2 -16 182 16 2 1047 378 0 0 0 chr9 60646955 60646997 -63429175 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1047 928 249 78 24 chr9 60647453 60647708 -63428464 + B4 SINE B4 3 271 -21 2 1047 463 234 40 21 chr9 60647867 60647993 -63428179 - B3A SINE B2 0 216 88 2 1047 203 143 23 23 chr9 60647999 60648042 -63428130 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1047 959 227 82 39 chr9 60648223 60648503 -63427669 - B4 SINE B4 0 292 1 2 1047 298 279 165 60 chr9 60648577 60648893 -63427279 + L1MC5 LINE L1 6741 7089 -872 2 1047 240 177 258 0 chr9 60649182 60649244 -63426928 + L1MC5 LINE L1 7356 7433 -528 2 1047 600 295 109 57 chr9 60649639 60649970 -63426202 + RMER10A LTR ERVL 68 415 -27 2 1047 914 286 62 16 chr9 60650082 60650324 -63425848 + B4 SINE B4 40 292 0 2 1047 1198 61 7 0 chr9 60650499 60650646 -63425526 - B1_Mus1 SINE Alu 0 148 1 2 1047 221 57 29 0 chr9 60650660 60650695 -63425477 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1047 180 258 103 96 chr9 60650768 60650914 -63425258 - L3 LINE CR1 -2244 2245 2099 2 1047 565 259 6 41 chr9 60651835 60652004 -63424168 + RSINE1 SINE B4 3 165 0 2 1047 213 132 26 0 chr9 60652373 60652411 -63423761 + PB1D9 SINE Alu 76 114 -6 2 1047 189 0 0 0 chr9 60653143 60653164 -63423008 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1047 2637 43 3 60 chr9 60653233 60653580 -63422592 - ORR1A2 LTR MaLR 0 327 1 3 1047 279 79 0 0 chr9 60653652 60653690 -63422482 + (TCC)n Simple_repeat Simple_repeat 2 39 0 3 1047 1837 212 40 33 chr9 60653886 60654285 -63421887 + MTD LTR MaLR 18 419 0 3 1047 494 242 58 0 chr9 60654610 60654730 -63421442 - ID_B1 SINE B4 -14 210 84 3 1047 616 211 57 51 chr9 60654814 60654989 -63421183 - B3A SINE B2 -3 195 20 3 1047 225 360 75 57 chr9 60655159 60655371 -63420801 + MIRb SINE MIR 4 219 -49 3 1047 490 170 80 0 chr9 60655875 60655975 -63420197 - L1MB5 LINE L1 -104 6070 5963 3 1047 654 217 82 36 chr9 60656232 60656428 -63419744 + B3 SINE B2 1 205 -11 3 1047 976 100 6 6 chr9 60656428 60656589 -63419583 + (TCTA)n Simple_repeat Simple_repeat 2 162 0 3 1047 429 116 0 0 chr9 60656606 60656675 -63419497 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 3 1047 420 20 0 0 chr9 60656686 60656735 -63419437 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1047 22 0 0 0 chr9 60656735 60656757 -63419415 + AT_rich Low_complexity Low_complexity 1 22 0 3 1047 401 36 18 0 chr9 60657371 60657426 -63418746 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1047 547 280 8 0 chr9 60657428 60657546 -63418626 - RSINE1 SINE B4 -38 127 9 3 1047 1094 197 39 0 chr9 60657682 60657885 -63418287 + B3 SINE B2 4 214 -2 3 1047 533 323 90 17 chr9 60658530 60658725 -63417447 - B4A SINE B4 -6 286 79 3 1047 195 100 0 0 chr9 60658725 60658755 -63417417 + (CATG)n Simple_repeat Simple_repeat 3 32 0 3 1047 401 332 95 43 chr9 60658755 60658770 -63417402 - B4 SINE B4 -214 78 65 3 1047 21 0 0 0 chr9 60658815 60658836 -63417336 + AT_rich Low_complexity Low_complexity 1 21 0 3 1047 182 270 0 0 chr9 60659175 60659212 -63416960 + L2c LINE L2 3335 3371 -16 3 1047 450 0 0 0 chr9 60660116 60660166 -63416006 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1047 692 253 134 5 chr9 60660173 60660360 -63415812 + ID_B1 SINE B4 1 211 -13 3 1047 523 51 25 0 chr9 60660360 60660439 -63415733 + (TAAA)n Simple_repeat Simple_repeat 1 81 0 3 1047 25 31 0 0 chr9 60660515 60660547 -63415625 + AT_rich Low_complexity Low_complexity 1 32 0 3 1047 206 30 91 0 chr9 60661345 60661378 -63414794 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1047 330 143 0 67 chr9 60662001 60662061 -63414111 + B3A SINE B2 1 56 -142 3 1047 826 322 88 24 chr9 60662193 60662521 -63413651 + MLT1E2 LTR MaLR 227 575 -52 3 1047 366 269 39 0 chr9 60662535 60662639 -63413533 + L1MCa LINE L1 1872 1979 -4529 3 1047 449 300 93 0 chr9 60663084 60663234 -63412938 - RSINE1 SINE B4 0 165 2 3 1047 423 0 0 0 chr9 60663815 60663862 -63412310 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1047 444 251 51 87 chr9 60664002 60664198 -63411974 + B2_Mm2 SINE B2 5 193 -2 3 1047 236 271 0 17 chr9 60664713 60664773 -63411399 + MT2B LTR ERVL 163 221 -380 3 1047 243 265 28 93 chr9 60666093 60666201 -63409971 + RMER12 LTR ERVK 732 832 -490 3 1047 858 298 55 29 chr9 60666181 60666454 -63409718 - B4A SINE B4 -4 288 9 3 1047 2961 24 0 0 chr9 60666640 60666972 -63409200 + L1Md_F2 LINE L1 5995 6326 -256 3 1047 795 210 60 65 chr9 60667607 60667806 -63408366 - B3A SINE B2 0 198 1 3 1047 250 173 58 0 chr9 60668521 60668573 -63407599 - B4A SINE B4 -237 55 1 3 1047 234 0 0 0 chr9 60668604 60668630 -63407542 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1047 1473 210 58 64 chr9 60668825 60669202 -63406970 - MTE2a LTR MaLR -1 378 4 3 1047 795 181 216 64 chr9 60669419 60669637 -63406535 + ORR1B2 LTR MaLR 1 251 -116 3 1047 1095 229 24 12 chr9 60669632 60669880 -63406292 - ORR1D2 LTR MaLR -100 270 20 3 1047 394 331 39 24 chr9 60669888 60670015 -63406157 + MER58B DNA MER1_type 213 341 0 3 1047 631 197 40 47 chr9 60670180 60670329 -63405843 + B3A SINE B2 1 148 -50 3 1047 536 301 85 63 chr9 60670330 60670788 -63405384 - MLT1H LTR MaLR -47 502 35 3 1047 257 232 12 35 chr9 60671010 60671095 -63405077 + (TATG)n Simple_repeat Simple_repeat 2 84 0 3 1047 460 297 179 20 chr9 60671104 60671355 -63404817 - B4A SINE B4 0 292 2 3 1047 259 237 0 0 chr9 60671713 60671772 -63404400 - B3A SINE B2 -139 59 1 3 1047 2128 197 45 5 chr9 60672342 60672707 -63403465 + MTC LTR MaLR 3 383 -38 3 1047 3433 28 8 0 chr9 60672707 60673100 -63403072 - MTA_Mm LTR MaLR 0 396 1 3 1047 2128 197 45 5 chr9 60673100 60673137 -63403035 + MTC LTR MaLR 384 420 -1 3 1047 258 290 0 0 chr9 60673181 60673243 -63402929 - ID4 SINE ID -20 63 2 3 1047 517 257 64 0 chr9 60673253 60673393 -63402779 - B1F1 SINE Alu 0 149 1 3 1047 680 279 74 29 chr9 60673727 60673783 -63402389 - B4A SINE B4 -8 284 231 3 1047 1658 198 89 28 chr9 60673783 60674178 -63401994 + MTD LTR MaLR 1 419 0 3 1047 680 279 74 29 chr9 60674178 60674365 -63401807 - B4A SINE B4 -62 230 30 3 1047 398 220 40 10 chr9 60675101 60675202 -63400970 - PB1D9 SINE Alu -13 107 4 3 1047 371 297 188 0 chr9 60675231 60675359 -63400813 - RSINE1 SINE B4 -11 154 3 3 1047 189 0 111 0 chr9 60675362 60675398 -63400774 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1047 368 279 40 13 chr9 60675545 60675694 -63400478 + (TG)n Simple_repeat Simple_repeat 1 153 0 3 1047 280 284 60 120 chr9 60675694 60675810 -63400362 - B3 SINE B2 -13 203 1 3 1047 352 260 120 0 chr9 60675810 60675910 -63400262 - B4A SINE B4 -180 112 1 3 1047 834 193 21 0 chr9 60676429 60676574 -63399598 - B1_Mur1 SINE Alu -1 148 1 3 1047 332 338 70 63 chr9 60676574 60676612 -63399560 - MT2B LTR ERVL -444 157 119 3 1047 548 314 93 34 chr9 60676784 60677020 -63399152 + MER21B LTR ERV1 378 627 -236 3 1047 397 248 7 110 chr9 60677020 60677174 -63398998 - MLT1A1 LTR MaLR 0 408 271 3 1047 488 304 12 31 chr9 60677555 60677718 -63398454 - RSINE1 SINE B4 -4 161 2 3 1047 216 0 0 0 chr9 60677832 60677856 -63398316 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1047 399 323 65 36 chr9 60677982 60678120 -63398052 - MER21B LTR ERV1 -62 801 660 3 1047 282 280 53 11 chr9 60678401 60678495 -63397677 - MLT1A1 LTR MaLR -275 133 36 3 1047 840 160 27 40 chr9 60678614 60678764 -63397408 - B1_Mur2 SINE Alu 0 149 2 3 1047 722 224 100 153 chr9 60678883 60679274 -63396898 - ORR1D2 LTR MaLR 0 370 1 3 1047 494 265 157 0 chr9 60679456 60679518 -63396654 + B4 SINE B4 4 88 -204 3 1047 256 321 35 18 chr9 60679518 60679632 -63396540 + PB1D9 SINE Alu 2 117 -3 3 1047 201 269 0 0 chr9 60679649 60679716 -63396456 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1047 1857 182 102 0 chr9 60679801 60680174 -63395998 - MTD LTR MaLR -8 411 1 3 1047 368 275 134 21 chr9 60680621 60680807 -63395365 - L1MB2 LINE L1 -48 6123 5917 3 1047 346 152 7 28 chr9 60680841 60680978 -63395194 + GA-rich Low_complexity Low_complexity 1 134 0 3 1047 261 218 0 0 chr9 60681173 60681228 -63394944 - L1MB2 LINE L1 -679 5492 5438 3 1047 240 273 140 54 chr9 60681205 60681484 -63394688 + L1M3 LINE L1 4877 5179 -961 3 1047 467 244 193 0 chr9 60681529 60681664 -63394508 - RSINE1 SINE B4 0 165 5 3 1047 274 305 125 38 chr9 60681676 60681860 -63394312 - L1MB2 LINE L1 -2193 3947 3748 3 1047 723 194 229 0 chr9 60682158 60682333 -63393839 - B3 SINE B2 0 216 2 3 1047 303 271 79 69 chr9 60682576 60682778 -63393394 - L1MC5 LINE L1 -585 7376 7173 3 1047 892 252 34 15 chr9 60682825 60683030 -63393142 + ID_B1 SINE B4 16 224 0 3 1047 21 0 0 0 chr9 60683109 60683130 -63393042 + AT_rich Low_complexity Low_complexity 1 21 0 3 1047 282 215 0 0 chr9 60684537 60684663 -63391509 + (CA)n Simple_repeat Simple_repeat 1 126 0 3 1047 21 36 0 0 chr9 60684945 60684973 -63391199 + AT_rich Low_complexity Low_complexity 1 28 0 3 1047 375 89 0 0 chr9 60686253 60686309 -63389863 + (TCC)n Simple_repeat Simple_repeat 2 57 0 3 1048 213 108 0 0 chr9 60686835 60686872 -63389300 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1048 722 222 0 47 chr9 60687024 60687194 -63388978 - RSINE1 SINE B4 -2 163 2 3 1048 944 117 256 6 chr9 60687360 60687532 -63388640 - B3 SINE B2 0 216 2 3 1048 278 273 0 105 chr9 60688325 60688411 -63387761 + MT2B LTR ERVL 164 240 -361 3 1048 631 161 116 0 chr9 60688344 60688456 -63387716 + B1_Mur4 SINE Alu 20 144 -6 3 1048 631 238 21 14 chr9 60689769 60689914 -63386258 - B1_Mur1 SINE Alu -1 148 3 3 1048 903 141 6 45 chr9 60690473 60690629 -63385543 - B1_Mur4 SINE Alu 0 150 1 3 1048 725 248 46 46 chr9 60690707 60690923 -63385249 - B3 SINE B2 0 216 1 3 1048 349 169 90 0 chr9 60691045 60691134 -63385038 + B3A SINE B2 86 182 -16 3 1048 296 83 21 0 chr9 60691171 60691219 -63384953 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1048 307 170 0 19 chr9 60691220 60691274 -63384898 + HAL1-3A_ME LINE L1 1976 2028 -830 3 1048 231 342 31 62 chr9 60691935 60692097 -63384075 - L2a LINE L2 -61 3365 3209 3 1048 485 294 106 0 chr9 60692354 60692524 -63383648 - B3A SINE B2 -10 188 1 3 1048 475 326 107 37 chr9 60692798 60693050 -63383122 + B4A SINE B4 3 278 -14 3 1048 729 110 0 0 chr9 60693050 60693177 -63382995 + (CA)n Simple_repeat Simple_repeat 1 127 0 3 1048 475 326 107 37 chr9 60693177 60693195 -63382977 + B4A SINE B4 279 292 0 3 1048 1234 163 25 0 chr9 60693542 60693738 -63382434 - B3 SINE B2 -14 202 2 3 1048 242 179 18 0 chr9 60693909 60693965 -63382207 + CT-rich Low_complexity Low_complexity 3 59 0 3 1048 756 238 73 16 chr9 60694112 60694304 -63381868 - B3 SINE B2 0 216 14 3 1048 229 250 60 84 chr9 60694236 60694319 -63381853 - RSINE1 SINE B4 -84 81 1 4 1048 467 294 14 27 chr9 60694974 60695121 -63381051 - RSINE1 SINE B4 -18 147 3 4 1048 515 238 57 70 chr9 60695483 60695641 -63380531 + RSINE1 SINE B4 2 157 -8 4 1048 423 0 0 0 chr9 60695680 60695727 -63380445 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1048 970 172 113 15 chr9 60695808 60696003 -63380169 - B3 SINE B2 0 216 3 4 1048 236 172 56 111 chr9 60696033 60696105 -63380067 - L2b LINE L2 -23 3352 3285 4 1048 978 34 0 0 chr9 60696154 60696272 -63379900 + (TG)n Simple_repeat Simple_repeat 2 119 0 4 1048 698 239 70 75 chr9 60697468 60697667 -63378505 + B3A SINE B2 1 198 0 4 1048 381 269 74 22 chr9 60698330 60698524 -63377648 - RMER4B LTR ERVK -24 561 345 4 1048 1008 167 66 20 chr9 60698532 60698728 -63377444 - RMER4B LTR ERVK -353 232 28 4 1048 366 67 406 19 chr9 60698711 60698817 -63377355 - B2_Mm2 SINE B2 -2 193 47 4 1048 1251 102 11 17 chr9 60698883 60699063 -63377109 - B2_Mm1t SINE B2 -14 179 1 4 1048 1304 241 118 23 chr9 60699388 60699769 -63376403 - MTD LTR MaLR -14 405 1 4 1048 183 184 0 0 chr9 60701304 60701342 -63374830 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 1048 813 259 47 9 chr9 60701344 60701558 -63374614 - ID_B1 SINE B4 -1 223 2 4 1048 334 292 52 0 chr9 60701781 60701877 -63374295 + ID_B1 SINE B4 87 187 -37 4 1048 382 227 99 32 chr9 60702333 60702478 -63373694 - B3A SINE B2 -10 206 57 4 1048 409 171 121 12 chr9 60702668 60702751 -63373421 - B1_Mur2 SINE Alu -1 148 57 4 1048 29 0 0 0 chr9 60702770 60702799 -63373373 + AT_rich Low_complexity Low_complexity 1 29 0 4 1048 877 229 10 5 chr9 60702806 60702999 -63373173 - B3A SINE B2 -2 196 3 4 1048 660 291 73 0 chr9 60703448 60703627 -63372545 + B3A SINE B2 7 198 0 4 1048 352 204 135 58 chr9 60704424 60704528 -63371644 - PB1D10 SINE Alu -1 116 5 4 1048 205 376 79 16 chr9 60705345 60705472 -63370700 - L2b LINE L2 -5 3370 3236 4 1048 1174 146 85 33 chr9 60706662 60706874 -63369298 + URR1B DNA MER1_type 2 224 -1 4 1048 302 295 0 0 chr9 60707076 60707154 -63369018 + RSINE1 SINE B4 16 93 -72 4 1048 378 0 0 0 chr9 60707168 60707210 -63368962 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1048 506 266 0 0 chr9 60707787 60707900 -63368272 + PB1D7 SINE Alu 2 114 -6 4 1048 749 271 21 0 chr9 60707915 60708103 -63368069 + B3A SINE B2 2 193 -5 4 1048 632 266 76 5 chr9 60708503 60708518 -63367654 - B3A SINE B2 0 198 184 4 1048 312 27 0 0 chr9 60708518 60708555 -63367617 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1048 632 266 76 5 chr9 60708555 60708724 -63367448 - B3A SINE B2 -15 183 2 4 1048 592 257 91 28 chr9 60709404 60709580 -63366592 + B3A SINE B2 12 198 0 4 1048 279 156 0 0 chr9 60712376 60712421 -63363751 - B3 SINE B2 -11 205 161 4 1048 640 281 7 0 chr9 60712458 60712593 -63363579 + B3 SINE B2 20 155 -61 4 1048 516 299 98 14 chr9 60712871 60713085 -63363087 + MER2 DNA MER2_type 4 235 -110 4 1048 709 255 20 0 chr9 60714393 60714542 -63361630 - B3 SINE B2 -57 159 8 4 1048 778 206 97 6 chr9 60714834 60715010 -63361162 - B3A SINE B2 -5 193 2 4 1048 629 139 208 24 chr9 60715332 60715457 -63360715 + B1_Mur1 SINE Alu 2 149 0 4 1048 684 254 24 6 chr9 60715851 60716021 -63360151 + ID_B1 SINE B4 32 204 -20 4 1048 535 246 8 0 chr9 60716756 60716878 -63359294 + RSINE1 SINE B4 3 125 -40 4 1048 180 0 0 0 chr9 60717357 60717377 -63358795 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1048 1381 65 54 0 chr9 60720331 60720516 -63355656 - B2_Mm2 SINE B2 0 195 1 4 1048 338 279 88 195 chr9 60721222 60721427 -63354745 + B3 SINE B2 9 191 -25 4 1048 209 182 36 0 chr9 60722027 60722082 -63354090 + (TGAG)n Simple_repeat Simple_repeat 2 58 0 4 1048 530 178 0 32 chr9 60722090 60722276 -63353896 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1048 287 202 12 0 chr9 60722306 60722390 -63353782 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1048 682 266 35 0 chr9 60723455 60723598 -63352574 + B3A SINE B2 2 149 -49 4 1048 1083 97 0 0 chr9 60723607 60723920 -63352252 + (CA)n Simple_repeat Simple_repeat 1 313 0 4 1048 711 271 94 15 chr9 60725329 60725595 -63350577 + B4A SINE B4 3 289 -3 4 1048 1035 139 0 0 chr9 60725611 60725791 -63350381 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1048 1137 106 0 0 chr9 60725803 60725983 -63350189 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1048 465 160 0 0 chr9 60726426 60726532 -63349640 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 1048 842 268 25 25 chr9 60726547 60726826 -63349346 - B4A SINE B4 -13 279 1 4 1048 327 304 104 0 chr9 60727047 60727061 -63349111 - ID_B1 SINE B4 -4 220 84 4 1048 379 282 45 0 chr9 60727061 60727171 -63349001 - PB1D10 SINE Alu 0 117 3 4 1048 304 88 35 0 chr9 60727219 60727276 -63348896 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1048 316 275 74 8 chr9 60727485 60727606 -63348566 + B4A SINE B4 2 130 -162 4 1048 600 106 0 0 chr9 60727646 60727740 -63348432 + (CA)n Simple_repeat Simple_repeat 2 95 0 4 1048 921 152 0 27 chr9 60728310 60728459 -63347713 - B1_Mur3 SINE Alu 0 149 5 4 1048 857 274 63 26 chr9 60728635 60728905 -63347267 + B4A SINE B4 1 280 -12 4 1048 1863 152 3 75 chr9 60728967 60729329 -63346843 - RLTR31A_Mm LTR ERVK -248 336 1 4 1048 598 344 11 6 chr9 60730024 60730205 -63345967 - B4A SINE B4 -7 285 104 4 1048 21 0 0 0 chr9 60730247 60730268 -63345904 + AT_rich Low_complexity Low_complexity 1 21 0 4 1048 295 319 66 15 chr9 60730520 60730657 -63345515 - Lx9 LINE L1 -1739 5905 5762 4 1048 716 244 18 35 chr9 60730871 60731041 -63345131 - B3A SINE B2 0 198 32 4 1048 938 80 170 12 chr9 60731422 60731587 -63344585 - B2_Mm2 SINE B2 -1 194 4 4 1048 180 0 0 0 chr9 60731643 60731663 -63344509 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1048 503 239 0 50 chr9 60731755 60731874 -63344298 + B3 SINE B2 58 170 -46 4 1048 223 203 0 68 chr9 60731922 60731996 -63344176 + RSINE1 SINE B4 94 162 -3 4 1048 192 125 0 0 chr9 60732551 60732583 -63343589 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1048 504 0 0 0 chr9 60733348 60733404 -63342768 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1048 306 0 0 0 chr9 60733404 60733438 -63342734 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1048 378 0 0 0 chr9 60733511 60733553 -63342619 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1048 342 0 0 0 chr9 60733553 60733591 -63342581 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1048 303 232 36 24 chr9 60733591 60733675 -63342497 - B4A SINE B4 -30 262 178 4 1048 207 0 0 0 chr9 60733675 60733698 -63342474 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1048 309 235 44 0 chr9 60733729 60733797 -63342375 - B4 SINE B4 -214 78 8 4 1048 672 278 35 6 chr9 60735443 60735613 -63340559 + B3 SINE B2 4 178 -38 4 1048 405 0 0 0 chr9 60735627 60735672 -63340500 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1048 396 0 0 0 chr9 60735760 60735804 -63340368 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1048 598 314 117 18 chr9 60736016 60736350 -63339822 + MER31A LTR ERV1 10 376 -109 4 1048 427 301 84 13 chr9 60736775 60736930 -63339242 + B4A SINE B4 7 172 -120 4 1048 722 261 97 11 chr9 60737215 60737401 -63338771 - MTD LTR MaLR -216 203 2 4 1048 652 356 8 8 chr9 60737401 60737633 -63338539 - B4A SINE B4 -60 232 1 4 1048 711 269 39 10 chr9 60738040 60738243 -63337929 - ID_B1 SINE B4 -1 223 15 4 1048 232 284 88 35 chr9 60738616 60738729 -63337443 + L2c LINE L2 3048 3166 -221 4 1048 644 321 20 52 chr9 60738774 60739024 -63337148 - MLT1D LTR MaLR 0 505 264 4 1048 510 205 55 8 chr9 60739628 60739756 -63336416 + B1F SINE Alu 14 147 -2 4 1048 199 313 58 35 chr9 60739959 60740045 -63336127 + MIRc SINE MIR 41 128 -140 4 1048 234 245 34 94 chr9 60741488 60741605 -63334567 - MLT1D-int LTR MaLR -41 1346 1237 4 1048 448 222 11 33 chr9 60743017 60743199 -63332973 + CT-rich Low_complexity Low_complexity 1 178 0 4 1048 736 242 120 5 chr9 60743820 60744057 -63332115 - B4A SINE B4 -3 289 18 4 1048 261 0 0 0 chr9 60744175 60744204 -63331968 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 4 1048 324 266 92 59 chr9 60744922 60745074 -63331098 + MLT1A1 LTR MaLR 252 408 0 4 1048 249 347 76 8 chr9 60745409 60745528 -63330644 - L3 LINE CR1 -792 3697 3571 4 1048 369 62 0 0 chr9 60745836 60745884 -63330288 + (TCTCCC)n Simple_repeat Simple_repeat 2 49 0 4 1048 770 257 164 29 chr9 60745941 60746226 -63329946 + L1MB8 LINE L1 5800 6119 -59 4 1048 184 255 117 0 chr9 60746646 60746719 -63329453 + L2a LINE L2 3274 3380 -46 4 1048 297 0 0 0 chr9 60746726 60746759 -63329413 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 4 1048 444 374 10 10 chr9 60746780 60746972 -63329200 - MER20 DNA MER1_type -1 218 27 4 1048 181 224 129 65 chr9 60747052 60747114 -63329058 - L3 LINE CR1 -900 3589 3524 4 1048 288 314 171 40 chr9 60747213 60747535 -63328637 - L3 LINE CR1 -1556 2933 2570 4 1048 301 365 53 48 chr9 60747843 60748050 -63328122 - RMER15 LTR ERVL -22 553 346 4 1048 388 243 239 18 chr9 60748557 60748670 -63327502 + B4 SINE B4 127 264 -28 4 1048 371 313 106 51 chr9 60748725 60748981 -63327191 - LTR16C LTR ERVL -53 436 167 4 1048 267 307 96 43 chr9 60749092 60749279 -63326893 + LTR16A LTR ERVL 233 429 -22 4 1048 184 100 24 24 chr9 60749611 60749652 -63326520 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 4 1048 582 260 118 63 chr9 60749660 60749898 -63326274 - B4A SINE B4 -41 251 1 4 1048 228 208 247 14 chr9 60750638 60750711 -63325461 + MIRb SINE MIR 65 154 -114 4 1048 915 121 24 6 chr9 60751420 60751586 -63324586 + CT-rich Low_complexity Low_complexity 1 169 0 5 1048 444 82 0 0 chr9 60751672 60751733 -63324439 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 5 1048 909 317 37 37 chr9 60752838 60753212 -63322960 + MTEa LTR MaLR 2 375 -4 5 1048 288 294 112 69 chr9 60753246 60753824 -63322348 + L1ME3B LINE L1 2783 3406 -2740 5 1048 312 27 0 0 chr9 60753898 60753935 -63322237 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1048 598 226 76 13 chr9 60753978 60754113 -63322059 - MTD LTR MaLR -2 417 271 5 1048 180 0 0 0 chr9 60754113 60754133 -63322039 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1048 708 227 70 52 chr9 60754133 60754311 -63321861 - MTD LTR MaLR -149 270 1 5 1048 219 139 0 0 chr9 60754354 60754390 -63321782 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1048 885 192 67 57 chr9 60754391 60754601 -63321571 - B4 SINE B4 -80 212 1 5 1048 250 248 118 96 chr9 60754617 60754697 -63321475 + L1ME3B LINE L1 3496 3580 -2566 5 1048 1075 298 44 6 chr9 60754697 60755062 -63321110 - MTEa LTR MaLR 0 379 1 5 1048 250 248 118 96 chr9 60755062 60755159 -63321013 + L1ME3B LINE L1 3581 3677 -2469 5 1048 329 297 0 32 chr9 60755199 60755305 -63320867 + B1F SINE Alu 13 148 -1 5 1048 325 284 172 55 chr9 60755358 60755838 -63320334 + L1ME3B LINE L1 3755 4294 -1852 5 1048 584 246 22 15 chr9 60755838 60755974 -63320198 + ID_B1 SINE B4 87 223 -1 5 1048 538 277 203 33 chr9 60755975 60756353 -63319819 + L1ME3B LINE L1 4276 4717 -1429 5 1048 633 143 229 0 chr9 60756406 60756546 -63319626 - MTD LTR MaLR -17 402 231 5 1048 761 319 66 45 chr9 60756928 60757397 -63318775 + L1ME3B LINE L1 5616 6094 -146 5 1048 207 240 19 37 chr9 60757456 60757564 -63318608 + (TAAA)n Simple_repeat Simple_repeat 3 108 0 5 1048 307 310 114 47 chr9 60757611 60757693 -63318479 - LTR33C LTR ERVL -181 448 359 5 1048 1152 214 136 67 chr9 60757693 60758039 -63318133 - ORR1D2 LTR MaLR 0 370 1 5 1048 307 310 114 47 chr9 60758039 60758209 -63317963 - LTR33C LTR ERVL -271 358 179 5 1048 318 372 65 0 chr9 60758209 60758362 -63317810 - RMER15 LTR ERVL 0 575 413 5 1048 1578 252 58 28 chr9 60758356 60758821 -63317351 + RMER20A LTR ERVK 38 516 0 5 1048 330 262 30 76 chr9 60758948 60759080 -63317092 - RMER15 LTR ERVL -449 126 1 5 1048 180 0 0 0 chr9 60759165 60759185 -63316987 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1048 2151 275 43 19 chr9 60759256 60759878 -63316294 - RMER15-int LTR ERVL -208 4791 4155 5 1048 1005 199 6 11 chr9 60760180 60760363 -63315809 + ORR1E LTR MaLR 18 199 -160 5 1048 2552 292 61 21 chr9 60760363 60761238 -63314934 - RMER15-int LTR ERVL -3894 1105 196 5 1048 1711 164 61 0 chr9 60761254 60761565 -63314607 - MTD LTR MaLR -46 373 44 5 1048 259 289 40 30 chr9 60761577 60761677 -63314495 - RMER15 LTR ERVL -177 398 298 5 1048 979 285 40 11 chr9 60762339 60762612 -63313560 - B4A SINE B4 0 292 12 5 1048 864 333 47 77 chr9 60762765 60763364 -63312808 - LTR86C LTR ERVL -21 600 20 5 1048 366 325 70 0 chr9 60764227 60764341 -63311831 - ID_B1 SINE B4 -1 223 102 5 1048 328 216 14 0 chr9 60765296 60765370 -63310802 + L1MB2 LINE L1 6073 6147 -24 5 1048 489 76 0 0 chr9 60765456 60765522 -63310650 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 5 1048 379 328 53 38 chr9 60765636 60765845 -63310327 + L1M5 LINE L1 5257 5468 -696 5 1048 738 266 16 21 chr9 60766155 60766347 -63309825 - ID_B1 SINE B4 -33 191 1 5 1048 1473 153 0 5 chr9 60766357 60766580 -63309592 - URR1B DNA MER1_type -3 222 1 5 1048 2212 172 44 10 chr9 60766839 60767226 -63308946 + MTC LTR MaLR 15 414 -7 5 1048 207 0 0 0 chr9 60767916 60767939 -63308233 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1048 212 300 25 0 chr9 60769027 60769107 -63307065 + (TTTA)n Simple_repeat Simple_repeat 3 84 0 5 1048 535 281 124 23 chr9 60769206 60769465 -63306707 - B4A SINE B4 -7 285 1 5 1048 608 303 126 51 chr9 60770061 60770260 -63305912 + MT2A LTR ERVL 1 226 -307 5 1048 222 37 0 0 chr9 60770260 60770287 -63305885 + (CTG)n Simple_repeat Simple_repeat 3 29 0 5 1048 608 303 126 51 chr9 60770287 60770477 -63305695 + MT2A LTR ERVL 227 419 -114 5 1048 2400 241 138 13 chr9 60770514 60771132 -63305040 - Lx6 LINE L1 -26 7434 6740 5 1048 458 108 14 0 chr9 60771132 60771206 -63304966 + (TCC)n Simple_repeat Simple_repeat 3 77 0 5 1048 357 316 0 0 chr9 60771208 60771303 -63304869 - Lx6 LINE L1 -734 6726 6632 5 1048 258 130 0 98 chr9 60771342 60771355 -63304817 + MLT2D LTR ERVL 517 528 -34 5 1048 453 19 0 0 chr9 60771355 60771409 -63304763 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1048 260 115 0 5 chr9 60771409 60771446 -63304726 + MLT2D LTR ERVL 526 562 0 5 1048 255 342 184 15 chr9 60771446 60771847 -63304325 + L2 LINE L2 1631 2099 -1320 5 1048 687 247 89 50 chr9 60771965 60772182 -63303990 - B4 SINE B4 0 292 84 5 1048 261 244 152 22 chr9 60772196 60772288 -63303884 + Tigger5 DNA MER2_type 152 255 -2151 5 1048 692 235 48 6 chr9 60772291 60772458 -63303714 + Tigger5 DNA MER2_type 2172 2345 -61 5 1048 369 261 0 0 chr9 60774543 60774654 -63301518 + (CA)n Simple_repeat Simple_repeat 2 112 0 5 1048 330 155 17 0 chr9 60774654 60774712 -63301460 + HAL1-3A_ME LINE L1 1973 2031 -827 5 1048 405 0 0 0 chr9 60775426 60775471 -63300701 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1048 265 257 57 0 chr9 60775544 60775614 -63300558 + ID4 SINE ID 1 74 -9 5 1048 229 211 42 0 chr9 60775634 60775705 -63300467 + GA-rich Low_complexity Low_complexity 2 75 0 5 1048 946 195 25 64 chr9 60775876 60776079 -63300093 + B3 SINE B2 22 216 0 5 1048 727 285 91 23 chr9 60776289 60776508 -63299664 + B4 SINE B4 5 238 -54 5 1048 311 350 27 27 chr9 60776732 60776917 -63299255 + RMER15 LTR ERVL 380 564 -11 5 1048 2680 163 80 77 chr9 60777155 60777250 -63298922 - RMER15 LTR ERVL 0 575 485 5 1048 2115 150 29 47 chr9 60777250 60777634 -63298538 - ORR1C1 LTR MaLR 0 378 2 5 1048 2682 163 80 77 chr9 60777634 60778111 -63298061 - RMER15 LTR ERVL -91 484 1 5 1048 245 170 0 0 chr9 60778351 60778398 -63297774 - ORR1E LTR MaLR 0 379 333 5 1048 757 206 69 50 chr9 60778390 60778604 -63297568 - ORR1E LTR MaLR -155 215 1 5 1048 513 341 33 26 chr9 60778745 60779016 -63297156 - HERV16-int LTR ERVL -3000 1996 1724 5 1048 1892 146 47 91 chr9 60779739 60780123 -63296049 - ORR1B2 LTR MaLR 0 367 1 5 1048 1792 238 42 37 chr9 60780163 60780644 -63295528 - RMER5 LTR ERV1 -19 515 33 5 1048 611 324 88 18 chr9 60781556 60781940 -63294232 - L1MC1 LINE L1 -5 6328 5918 5 1048 1013 260 147 18 chr9 60782418 60782814 -63293358 - L1MC1 LINE L1 -412 5921 5475 5 1048 301 336 129 62 chr9 60783167 60783241 -63292931 + L1M5 LINE L1 2423 2485 -3661 5 1048 529 252 72 0 chr9 60783241 60783380 -63292792 + B1F SINE Alu 1 149 0 5 1048 301 336 129 62 chr9 60783380 60783799 -63292373 + L1M5 LINE L1 2486 2954 -3192 5 1048 894 226 91 48 chr9 60783799 60784008 -63292164 - ID_B1 SINE B4 -5 219 2 5 1048 301 336 129 62 chr9 60784008 60784142 -63292030 + L1M5 LINE L1 2955 3093 -3053 5 1048 186 43 0 0 chr9 60784361 60784384 -63291788 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1048 245 316 70 0 chr9 60784814 60784928 -63291244 - ORR1D1 LTR MaLR 0 374 253 5 1048 349 306 18 18 chr9 60785139 60785252 -63290920 - MLT1A1 LTR MaLR -294 114 2 5 1048 632 290 22 28 chr9 60785515 60785696 -63290476 + B3A SINE B2 1 180 -18 5 1048 29 28 0 0 chr9 60785709 60785745 -63290427 + AT_rich Low_complexity Low_complexity 1 36 0 5 1048 335 260 552 30 chr9 60785818 60785981 -63290191 + B4 SINE B4 3 250 -42 5 1048 369 0 0 0 chr9 60785982 60786023 -63290149 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1048 336 64 0 0 chr9 60786023 60786070 -63290102 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1048 445 317 99 46 chr9 60786357 60786641 -63289531 - MLT1J LTR MaLR -213 299 1 5 1048 223 237 213 73 chr9 60786703 60786867 -63289305 - L2c LINE L2 -61 3326 3140 5 1048 696 141 0 0 chr9 60787304 60787439 -63288733 + (TG)n Simple_repeat Simple_repeat 1 135 0 5 1048 244 322 38 76 chr9 60787495 60787680 -63288492 - MIR3 SINE MIR -29 179 2 5 1048 840 234 17 6 chr9 60789289 60789461 -63286711 - ID_B1 SINE B4 -16 208 35 5 1048 1103 180 5 11 chr9 60789550 60789735 -63286437 - B3 SINE B2 -32 184 1 5 1048 366 171 0 0 chr9 60790560 60790630 -63285542 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1048 244 365 88 18 chr9 60791029 60791143 -63285029 - MIR SINE MIR -97 165 48 5 1048 206 300 144 0 chr9 60791168 60791258 -63284914 + L2b LINE L2 3273 3375 0 5 1048 1377 216 144 9 chr9 60792659 60793021 -63283151 + MTD LTR MaLR 1 401 -18 5 1048 386 121 15 0 chr9 60793532 60793598 -63282574 + (GGA)n Simple_repeat Simple_repeat 3 69 0 5 1048 222 184 0 39 chr9 60794210 60794261 -63281911 + CT-rich Low_complexity Low_complexity 2 50 0 5 1048 902 253 17 13 chr9 60794271 60794503 -63281669 - B4A SINE B4 -59 233 1 5 1048 441 288 36 0 chr9 60794633 60794744 -63281428 + MER5A1 DNA MER1_type 1 115 -51 5 1048 310 330 63 54 chr9 60794776 60794981 -63281191 + L3 LINE CR1 4188 4394 -95 5 1048 363 337 42 32 chr9 60795731 60795969 -63280203 + MIRb SINE MIR 9 265 -3 5 1048 230 56 28 0 chr9 60796234 60796270 -63279902 + (CAA)n Simple_repeat Simple_repeat 2 38 0 5 1048 274 206 29 73 chr9 60797319 60797387 -63278785 - B4 SINE B4 -18 274 210 5 1048 299 342 0 0 chr9 60797385 60797464 -63278708 - B4 SINE B4 -212 80 2 5 1048 209 220 100 0 chr9 60797837 60797887 -63278285 + L2c LINE L2 3324 3378 -9 5 1048 183 340 66 28 chr9 60798208 60798314 -63277858 + MIRm SINE MIR 151 260 -16 5 1048 384 292 167 5 chr9 60799459 60799669 -63276503 - MLT1D LTR MaLR 0 505 262 5 1048 1273 258 82 19 chr9 60799808 60800187 -63275985 + MTD LTR MaLR 20 405 -14 5 1048 689 241 57 6 chr9 60800457 60800632 -63275540 - ID_B1 SINE B4 -29 195 12 5 1048 297 0 0 0 chr9 60801330 60801363 -63274809 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1048 223 250 19 19 chr9 60801368 60801421 -63274751 - ID4 SINE ID -26 57 5 5 1048 421 365 0 7 chr9 60801429 60801575 -63274597 - B1F1 SINE Alu 0 149 5 5 1048 372 249 32 41 chr9 60801754 60801876 -63274296 - B1F SINE Alu -2 147 18 5 1048 235 309 29 58 chr9 60801790 60801893 -63274279 - MT2B LTR ERVL -341 260 161 5 1048 987 107 12 6 chr9 60801894 60802064 -63274108 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 1048 1540 295 103 33 chr9 60802065 60802696 -63273476 + Zaphod DNA Tip100 104 778 -3253 5 1048 533 231 65 82 chr9 60802700 60802945 -63273227 + Lx7 LINE L1 5877 6117 -1579 6 1048 2580 201 107 41 chr9 60802941 60802978 -63273194 + Lx7 LINE L1 6632 6668 -1028 6 1048 1997 114 35 70 chr9 60802978 60803319 -63272853 - ORR1A4 LTR MaLR 0 329 1 6 1048 2580 201 107 41 chr9 60803319 60803966 -63272206 + Lx7 LINE L1 6669 7361 -335 6 1048 314 215 107 8 chr9 60804030 60804152 -63272020 + Lx7 LINE L1 7563 7696 0 6 1048 641 226 22 0 chr9 60804232 60804369 -63271803 + RSINE1 SINE B4 3 142 -23 6 1048 899 262 90 4 chr9 60804660 60804928 -63271244 + B4A SINE B4 2 292 0 6 1048 290 156 0 15 chr9 60804930 60804995 -63271177 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1048 432 298 117 13 chr9 60804997 60805228 -63270944 + Zaphod DNA Tip100 3644 3898 -133 5 1048 444 0 79 0 chr9 60805285 60805361 -63270811 + (CCTG)n Simple_repeat Simple_repeat 4 85 0 6 1048 227 349 102 16 chr9 60806647 60806775 -63269397 + RMER12 LTR ERVK 712 850 -472 6 1048 184 88 51 34 chr9 60806893 60806952 -63269220 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 6 1048 403 261 27 122 chr9 60807018 60807166 -63269006 + MT2B LTR ERVL 145 278 -323 6 1048 443 260 43 145 chr9 60807034 60807054 -63269118 + B4A SINE B4 81 217 -75 6 1048 921 132 0 0 chr9 60807054 60807183 -63268989 + B1_Mus2 SINE Alu 9 137 -10 6 1048 336 24 0 0 chr9 60807183 60807224 -63268948 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1048 443 260 43 145 chr9 60807224 60807281 -63268891 + B4A SINE B4 218 266 -26 6 1048 568 304 0 0 chr9 60807264 60807389 -63268783 + RSINE1 SINE B4 35 159 -6 6 1048 1223 173 216 58 chr9 60807671 60808045 -63268127 + RMER20A LTR ERVK 12 431 -85 6 1048 390 281 103 106 chr9 60808041 60808352 -63267820 - ORR1E LTR MaLR -47 312 3 6 1048 1084 114 6 6 chr9 60808432 60808609 -63267563 + (TTC)n Simple_repeat Simple_repeat 1 177 0 6 1048 466 297 25 86 chr9 60808724 60808886 -63267286 - B4A SINE B4 -44 248 97 6 1048 555 295 88 74 chr9 60808889 60809105 -63267067 - B4A SINE B4 -73 219 1 6 1048 254 307 75 62 chr9 60809590 60809631 -63266541 + MLT1J-int LTR MaLR 1203 1245 -142 6 1048 536 293 79 0 chr9 60809631 60809771 -63266401 + MER20 DNA MER1_type 1 151 -68 6 1048 2662 118 148 12 chr9 60810528 60811040 -63265132 + RMER1B Other Other 484 1065 -1 6 1048 628 221 7 37 chr9 60811067 60811203 -63264969 - B3A SINE B2 -4 194 63 6 1048 902 238 63 30 chr9 60811201 60811438 -63264734 + MTD LTR MaLR 170 405 -14 6 1048 228 292 69 0 chr9 60812729 60812801 -63263371 - ID4 SINE ID -5 78 2 6 1048 327 245 30 54 chr9 60813077 60813245 -63262927 + (TG)n Simple_repeat Simple_repeat 2 165 0 6 1048 317 264 0 0 chr9 60813488 60813575 -63262597 + CT-rich Low_complexity Low_complexity 2 88 0 6 1048 2426 105 77 0 chr9 60813607 60813969 -63262203 + ORR1B1 LTR MaLR 1 390 -4 6 1048 418 298 0 0 chr9 60813969 60814073 -63262099 - PB1D10 SINE Alu -12 105 2 6 1048 748 216 22 0 chr9 60814568 60814707 -63261465 + B1F1 SINE Alu 2 143 -6 6 1048 307 158 13 26 chr9 60814737 60814750 -63261422 + polypurine Low_complexity Low_complexity 3 15 0 6 1048 327 49 0 0 chr9 60814750 60814791 -63261381 + (GGGAA)n Simple_repeat Simple_repeat 2 42 0 6 1048 307 158 13 26 chr9 60814791 60814815 -63261357 + polypurine Low_complexity Low_complexity 16 38 0 6 1048 1148 103 0 6 chr9 60814815 60814990 -63261182 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 6 1048 307 158 13 26 chr9 60814990 60815029 -63261143 + polypurine Low_complexity Low_complexity 39 77 0 6 1048 288 251 0 35 chr9 60815733 60815906 -63260266 + (TATG)n Simple_repeat Simple_repeat 4 170 0 6 1048 372 43 0 0 chr9 60816022 60816068 -63260104 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1048 192 77 0 0 chr9 60816412 60816438 -63259734 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 6 1048 225 219 67 79 chr9 60816618 60816707 -63259465 + RLTR13A LTR ERVK 249 336 -519 6 1048 226 171 0 0 chr9 60816940 60816981 -63259191 - MIRc SINE MIR -155 113 73 6 1049 482 286 66 5 chr9 60817514 60817711 -63258461 - L1MD LINE L1 -3447 2699 2491 6 1049 557 267 49 30 chr9 60817736 60817982 -63258190 - L1M3 LINE L1 -1524 4622 4410 6 1049 953 199 96 5 chr9 60817982 60818179 -63257993 - B3 SINE B2 0 216 2 6 1049 527 269 99 118 chr9 60818179 60818366 -63257806 - L1M3 LINE L1 -1735 4411 4197 6 1049 932 289 83 26 chr9 60818355 60818824 -63257348 + L1MA8 LINE L1 5767 6262 -29 6 1049 180 333 47 23 chr9 60819541 60819627 -63256545 + MIRb SINE MIR 49 136 -132 6 1049 227 280 13 51 chr9 60820268 60820347 -63255825 - LTR68 LTR ERV1 -538 202 127 6 1049 239 316 112 62 chr9 60821042 60821221 -63254951 - LTR16A LTR ERVL -19 432 245 6 1049 524 300 106 53 chr9 60821233 60821497 -63254675 - MER68 LTR ERVL -8 555 278 6 1049 1252 288 33 14 chr9 60821499 60821858 -63254314 - MTE2b LTR MaLR -3 376 11 6 1049 276 285 85 152 chr9 60821861 60821911 -63254261 - MER68 LTR ERVL -277 286 246 6 1049 1465 218 88 34 chr9 60821911 60822262 -63253910 - ORR1D2 LTR MaLR 0 370 1 6 1049 276 285 85 152 chr9 60822262 60822422 -63253750 - MER68 LTR ERVL -318 245 90 6 1049 188 400 135 6 chr9 60823211 60823367 -63252805 - L3 LINE CR1 -109 4380 4205 6 1049 538 279 51 25 chr9 60823367 60823389 -63252783 - RSINE1 SINE B4 -1 164 144 6 1049 333 0 0 0 chr9 60823389 60823426 -63252746 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1049 306 0 0 0 chr9 60823426 60823459 -63252713 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1049 538 279 51 25 chr9 60823459 60823593 -63252579 - RSINE1 SINE B4 -22 143 4 6 1049 883 244 38 43 chr9 60823593 60823824 -63252348 - B4A SINE B4 -62 230 1 6 1049 1071 210 235 10 chr9 60823885 60824174 -63251998 - MTD LTR MaLR 0 419 66 6 1049 1079 269 170 3 chr9 60824215 60824532 -63251640 - ORR1D2 LTR MaLR 0 370 1 6 1049 504 154 32 6 chr9 60825445 60825602 -63250570 + (TG)n Simple_repeat Simple_repeat 2 162 0 6 1049 874 234 23 50 chr9 60825734 60825954 -63250218 - B3 SINE B2 -1 215 2 6 1049 2804 61 5 81 chr9 60826004 60826399 -63249773 - RLTR10B2 LTR ERVK 0 365 1 6 1049 225 0 0 0 chr9 60826733 60826758 -63249414 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6 1049 819 204 18 36 chr9 60826789 60826957 -63249215 - RSINE1 SINE B4 0 165 1 6 1049 1025 213 78 92 chr9 60827512 60827894 -63248278 - MTE2a LTR MaLR 0 379 3 6 1049 1203 239 123 27 chr9 60828670 60829036 -63247136 - MTD LTR MaLR -15 404 4 6 1049 3217 46 18 0 chr9 60829802 60830191 -63245981 + MTA_Mm LTR MaLR 1 396 0 6 1049 214 234 0 21 chr9 60830757 60830805 -63245367 + MIRc SINE MIR 77 123 -145 6 1049 257 106 14 70 chr9 60830934 60831005 -63245167 + CT-rich Low_complexity Low_complexity 2 68 0 6 1049 251 333 127 8 chr9 60831012 60831130 -63245042 - B4A SINE B4 -119 173 42 6 1049 282 244 87 22 chr9 60831536 60831628 -63244544 + MIRc SINE MIR 43 140 -128 6 1049 1450 208 89 0 chr9 60834273 60834609 -63241563 + ORR1D2 LTR MaLR 5 370 0 6 1049 542 242 105 0 chr9 60834673 60834797 -63241375 + ID_B1 SINE B4 5 141 -83 6 1049 223 346 12 0 chr9 60835031 60835112 -63241060 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1049 532 283 45 60 chr9 60835122 60835321 -63240851 - B4A SINE B4 -8 284 89 6 1049 452 309 96 35 chr9 60836246 60836444 -63239728 + B4A SINE B4 2 211 -81 6 1049 717 251 102 53 chr9 60836938 60837044 -63239128 + L1MB5 LINE L1 5580 5685 -489 6 1049 342 0 0 0 chr9 60837044 60837082 -63239090 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1049 717 265 100 50 chr9 60837082 60837358 -63238814 + L1MB5 LINE L1 5685 5982 -201 6 1049 26 0 0 0 chr9 60837425 60837451 -63238721 + AT_rich Low_complexity Low_complexity 1 26 0 6 1049 806 287 136 21 chr9 60837665 60838003 -63238169 - MTEa LTR MaLR 0 379 3 6 1049 578 241 137 16 chr9 60838291 60838481 -63237691 - B3 SINE B2 -3 213 1 6 1049 218 236 26 53 chr9 60838495 60838571 -63237601 - B4 SINE B4 -206 86 13 6 1049 301 240 148 10 chr9 60838607 60838708 -63237464 - PB1D10 SINE Alu -10 117 3 6 1049 455 96 27 0 chr9 60839663 60839736 -63236436 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 6 1049 202 271 152 30 chr9 60840127 60840226 -63235946 + MIRc SINE MIR 46 156 -112 6 1049 464 273 204 29 chr9 60840900 60841213 -63234959 + RLTR9A LTR ERVK 1 368 0 6 1049 514 332 31 71 chr9 60841906 60842130 -63234042 - MTEa LTR MaLR -153 226 12 6 1049 738 238 0 12 chr9 60842448 60842614 -63233558 + MTD LTR MaLR 33 196 -223 6 1049 620 202 194 12 chr9 60842826 60842991 -63233181 + MTD LTR MaLR 169 363 -56 6 1049 4310 134 107 17 chr9 60843738 60844555 -63231617 - RMER19B LTR ERVK -8 894 5 6 1049 225 75 37 19 chr9 60844924 60844978 -63231194 + (TTTG)n Simple_repeat Simple_repeat 3 57 0 6 1049 244 193 105 0 chr9 60844978 60845035 -63231137 - RMER10A LTR ERVL -62 380 318 6 1049 941 239 31 31 chr9 60845440 60845669 -63230503 - B4 SINE B4 -22 270 42 6 1049 369 0 0 0 chr9 60845749 60845790 -63230382 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1049 323 74 72 24 chr9 60845792 60845875 -63230297 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 6 1049 276 352 19 58 chr9 60846264 60846418 -63229754 - MIR SINE MIR -114 148 1 6 1049 200 34 0 33 chr9 60846460 60846490 -63229682 + (TGGGGG)n Simple_repeat Simple_repeat 6 34 0 6 1049 189 305 40 50 chr9 60847043 60847143 -63229029 - MIRc SINE MIR -116 152 54 6 1049 189 107 0 0 chr9 60847495 60847523 -63228649 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1049 555 165 0 0 chr9 60847542 60847675 -63228497 + CT-rich Low_complexity Low_complexity 2 134 0 6 1049 429 20 0 0 chr9 60847675 60847725 -63228447 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1049 542 93 12 0 chr9 60848388 60848474 -63227698 + (TG)n Simple_repeat Simple_repeat 1 87 0 6 1049 856 123 7 21 chr9 60849054 60849195 -63226977 + Lx5 LINE L1 6728 6866 -184 6 1049 472 205 87 39 chr9 60849320 60849447 -63226725 + MTE-int LTR MaLR 1 133 -1447 6 1049 231 114 0 0 chr9 60849747 60849782 -63226390 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1049 1612 234 44 61 chr9 60849909 60850199 -63225973 - RCHARR1 DNA MER1_type -191 783 482 7 1049 377 331 25 12 chr9 60850199 60850361 -63225811 + RSINE1 SINE B4 2 165 0 7 1049 1612 234 44 61 chr9 60850361 60850548 -63225624 - RCHARR1 DNA MER1_type -493 481 314 7 1049 600 165 7 57 chr9 60850548 60850689 -63225483 + B1_Mur1 SINE Alu 1 134 -15 7 1049 244 200 33 0 chr9 60850701 60850761 -63225411 - RCHARR1 DNA MER1_type -753 221 160 7 1049 973 204 48 5 chr9 60851803 60852010 -63224162 + MTD LTR MaLR 1 216 -203 7 1049 3429 136 8 52 chr9 60852041 60852639 -63223533 + RMER1B Other Other 494 1065 -1 7 1049 198 167 0 0 chr9 60852651 60852687 -63223485 + GA-rich Low_complexity Low_complexity 1 36 0 7 1049 672 239 179 11 chr9 60852692 60852882 -63223290 + MTD LTR MaLR 196 417 -2 7 1049 309 373 81 11 chr9 60853675 60853849 -63222323 - MIRb SINE MIR -54 214 35 7 1049 997 250 29 46 chr9 60853905 60854099 -63222073 + MTD LTR MaLR 16 205 -214 7 1049 793 168 0 0 chr9 60854099 60854230 -63221942 + B1_Mus2 SINE Alu 5 135 -12 7 1049 189 0 0 0 chr9 60854230 60854251 -63221921 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 7 1049 997 262 93 62 chr9 60854251 60854414 -63221758 + MTD LTR MaLR 191 406 -1 7 1049 375 78 0 0 chr9 60854644 60854695 -63221477 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1049 545 299 98 19 chr9 60854695 60854910 -63221262 - B4A SINE B4 -23 269 38 7 1049 1017 62 0 192 chr9 60854972 60855170 -63221002 + B2_Mm2 SINE B2 2 161 -34 7 1049 333 0 0 0 chr9 60855170 60855207 -63220965 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 7 1049 216 0 0 0 chr9 60855373 60855397 -63220775 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1049 181 143 0 106 chr9 60855908 60855955 -63220217 - L2c LINE L2 -82 3305 3264 7 1049 409 361 60 34 chr9 60856477 60856694 -63219478 + B4A SINE B4 5 228 -64 7 1049 1097 43 36 0 chr9 60856694 60856834 -63219338 + B1_Mm SINE Alu 1 145 -2 7 1049 180 0 0 0 chr9 60856834 60856854 -63219318 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1049 409 361 60 34 chr9 60856854 60856904 -63219268 + B4A SINE B4 229 279 -13 7 1049 579 66 0 0 chr9 60856906 60856982 -63219190 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1049 1156 83 0 0 chr9 60856998 60857154 -63219018 + B2_Mm2 SINE B2 1 156 -39 7 1049 387 0 0 0 chr9 60857157 60857200 -63218972 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1049 317 315 0 11 chr9 60858132 60858222 -63217950 + C-rich Low_complexity Low_complexity 6 94 0 7 1049 286 181 27 27 chr9 60858526 60858600 -63217572 + (CAGA)n Simple_repeat Simple_repeat 1 74 0 7 1049 704 288 116 30 chr9 60858604 60859002 -63217170 - L1M2 LINE L1 -376 5780 5334 7 1049 681 214 44 25 chr9 60859034 60859192 -63216980 - B3A SINE B2 -30 168 8 7 1049 195 69 0 0 chr9 60859257 60859286 -63216886 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1049 1710 314 66 56 chr9 60859301 60859582 -63216590 + L1M2 LINE L1 4254 4555 -1588 7 1049 4955 39 0 3 chr9 60859582 60860197 -63215975 + L1Md_F3 LINE L1 5960 6572 -12 7 1049 1710 314 66 56 chr9 60860197 60860928 -63215244 + L1M2 LINE L1 4556 5276 -867 7 1049 196 344 0 0 chr9 60861506 60861570 -63214602 + MIRc SINE MIR 26 89 -179 7 1049 719 264 27 77 chr9 60862663 60862962 -63213210 + B4 SINE B4 2 285 -7 7 1049 330 254 0 0 chr9 60862969 60863079 -63213093 + (CA)n Simple_repeat Simple_repeat 1 110 0 7 1049 359 96 0 0 chr9 60863085 60863137 -63213035 + HAL1-3A_ME LINE L1 1975 2026 -832 7 1049 181 366 0 0 chr9 60863383 60863465 -63212707 + MIRb SINE MIR 173 254 -14 7 1049 289 136 0 29 chr9 60863821 60863889 -63212283 + G-rich Low_complexity Low_complexity 5 70 0 7 1049 289 300 44 51 chr9 60863892 60864029 -63212143 - MIR3 SINE MIR -36 172 37 7 1049 272 324 157 46 chr9 60864061 60864278 -63211894 - MIRb SINE MIR -6 262 22 7 1049 584 247 30 60 chr9 60865515 60865683 -63210489 - RSINE1 SINE B4 -1 164 2 7 1049 327 271 9 0 chr9 60865738 60865845 -63210327 + (CA)n Simple_repeat Simple_repeat 1 108 0 7 1049 364 188 14 0 chr9 60865853 60865922 -63210250 + HAL1-3A_ME LINE L1 1977 2046 -812 7 1049 261 0 0 0 chr9 60866021 60866050 -63210122 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1049 235 337 10 21 chr9 60867186 60867283 -63208889 - MER53 DNA hAT 0 193 98 7 1049 329 239 0 0 chr9 60868870 60868941 -63207231 + L1M5 LINE L1 5365 5435 -729 7 1049 930 210 11 5 chr9 60868942 60869112 -63207060 + B3 SINE B2 25 196 -20 7 1049 192 40 0 0 chr9 60869112 60869137 -63207035 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 7 1049 930 210 11 5 chr9 60869137 60869153 -63207019 + B3 SINE B2 197 212 -4 7 1049 1013 294 35 84 chr9 60869160 60869647 -63206525 + L1_Rod LINE L1 5375 5837 -10 7 1049 225 0 0 0 chr9 60870497 60870522 -63205650 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1049 629 249 64 0 chr9 60871223 60871262 -63204910 + B3 SINE B2 33 74 -142 7 1049 1924 137 122 6 chr9 60871262 60871615 -63204557 + ORR1B1 LTR MaLR 1 394 0 7 1049 629 249 64 0 chr9 60871615 60871748 -63204424 + B3 SINE B2 75 215 -1 7 1049 773 214 0 4 chr9 60871791 60872049 -63204123 + (ATG)n Simple_repeat Simple_repeat 1 257 0 7 1049 323 219 37 0 chr9 60872052 60872134 -63204038 + MER117 DNA MER1_type 79 163 -34 7 1049 624 271 141 9 chr9 60872964 60873184 -63202988 - B4A SINE B4 -41 251 3 7 1049 182 62 0 30 chr9 60874035 60874068 -63202104 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 7 1049 223 140 60 0 chr9 60875433 60875483 -63200689 + GA-rich Low_complexity Low_complexity 2 54 0 7 1049 1200 73 17 0 chr9 60875488 60875665 -63200507 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7 1049 1424 67 4 0 chr9 60875680 60875949 -63200223 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 7 1049 238 20 0 89 chr9 60877704 60877760 -63198412 + (GGA)n Simple_repeat Simple_repeat 3 53 0 7 1049 212 318 0 0 chr9 60879955 60880021 -63196151 + C-rich Low_complexity Low_complexity 1 66 0 7 1049 252 200 0 0 chr9 60881420 60881480 -63194692 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1049 227 206 10 52 chr9 60881753 60881850 -63194322 + CT-rich Low_complexity Low_complexity 2 94 0 7 1049 757 289 55 84 chr9 60881864 60882246 -63193926 - MER74A LTR ERVL 0 558 188 7 1049 1153 48 0 7 chr9 60882297 60882445 -63193727 + B1_Mus2 SINE Alu 1 147 0 7 1049 21 36 0 0 chr9 60882445 60882473 -63193699 + AT_rich Low_complexity Low_complexity 1 28 0 7 1049 21 0 0 0 chr9 60882798 60882819 -63193353 + AT_rich Low_complexity Low_complexity 1 21 0 7 1049 334 246 7 20 chr9 60882971 60883072 -63193100 - MIRm SINE MIR -99 177 74 7 1049 190 120 80 0 chr9 60884907 60884957 -63191215 + (TCTCTG)n Simple_repeat Simple_repeat 4 57 0 7 1049 354 45 0 0 chr9 60884959 60885003 -63191169 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1049 351 0 0 0 chr9 60885050 60885089 -63191083 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1049 501 255 9 9 chr9 60885100 60885211 -63190961 - B4 SINE B4 -18 274 164 7 1049 534 155 10 10 chr9 60885231 60885329 -63190843 - B4 SINE B4 -194 98 1 7 1049 262 244 51 13 chr9 60885850 60885929 -63190243 + MIRb SINE MIR 126 207 -61 7 1049 298 284 12 0 chr9 60886799 60886880 -63189292 + RSINE1 SINE B4 75 156 -9 7 1049 449 0 0 35 chr9 60886891 60886949 -63189223 + (CATA)n Simple_repeat Simple_repeat 4 59 0 7 1049 1389 51 0 0 chr9 60887802 60887980 -63188192 + (CCA)n Simple_repeat Simple_repeat 2 179 0 7 1049 315 0 0 0 chr9 60887996 60888031 -63188141 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1049 1182 69 0 0 chr9 60888403 60888547 -63187625 + B1_Mus1 SINE Alu 5 148 0 7 1049 300 83 0 0 chr9 60888547 60888595 -63187577 + (A)n Simple_repeat Simple_repeat 1 48 0 7 1049 696 147 24 18 chr9 60888936 60889102 -63187070 + CT-rich Low_complexity Low_complexity 2 168 0 7 1049 203 288 62 15 chr9 60889185 60889271 -63186901 + MIRc SINE MIR 63 156 -112 7 1049 944 261 64 29 chr9 60889379 60889659 -63186513 + B4A SINE B4 2 291 -1 7 1049 333 0 0 0 chr9 60889660 60889697 -63186475 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1049 263 93 0 23 chr9 60890089 60890133 -63186039 + (TCC)n Simple_repeat Simple_repeat 2 44 0 7 1049 303 339 55 8 chr9 60890967 60891095 -63185077 + MIRb SINE MIR 18 151 -117 7 1049 1019 315 74 43 chr9 60891157 60891542 -63184630 - MT2A LTR ERVL -8 525 132 7 1049 2408 110 0 3 chr9 60891542 60891869 -63184303 + ORR1A3 LTR MaLR 1 326 0 7 1049 1019 315 74 43 chr9 60891869 60891971 -63184201 - MT2A LTR ERVL -402 131 23 7 1049 2895 278 58 20 chr9 60892230 60893091 -63183081 - RCHARR1 DNA MER1_type -1 973 80 7 1049 484 224 12 0 chr9 60893176 60893261 -63182911 - MER58A DNA MER1_type -132 92 7 7 1049 409 353 114 70 chr9 60893782 60893922 -63182250 - L1MEd LINE L1 -4929 1190 1063 7 1049 1329 102 0 58 chr9 60893922 60894129 -63182043 - B2_Mm2 SINE B2 0 195 1 7 1049 409 353 114 70 chr9 60894129 60894390 -63181782 - L1MEd LINE L1 -5057 1062 771 7 1049 254 236 0 136 chr9 60894394 60894497 -63181675 + MER20 DNA MER1_type 1 89 -130 7 1049 777 212 29 0 chr9 60894863 60895000 -63181172 - RSINE1 SINE B4 -23 142 2 7 1049 517 355 63 20 chr9 60895172 60895471 -63180701 + MER46C DNA MER2_type 14 325 -13 7 1049 1205 254 14 44 chr9 60895790 60896087 -63180085 + B4A SINE B4 3 290 -2 7 1049 297 0 0 0 chr9 60896291 60896324 -63179848 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1049 593 292 100 20 chr9 60896835 60897189 -63178983 - L1ME2 LINE L1 -2 6160 5782 7 1049 304 288 117 23 chr9 60897558 60897686 -63178486 + L1MCa LINE L1 1829 1968 -4540 7 1049 307 254 253 97 chr9 60897715 60897978 -63178194 - B4 SINE B4 0 292 3 7 1049 528 16 0 0 chr9 60898370 60898431 -63177741 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1049 28 0 0 0 chr9 60898447 60898475 -63177697 + AT_rich Low_complexity Low_complexity 1 28 0 7 1049 462 204 145 99 chr9 60898990 60899142 -63177030 + B3A SINE B2 2 160 -38 7 1049 315 0 0 0 chr9 60899150 60899185 -63176987 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1049 595 259 92 131 chr9 60899299 60899636 -63176536 - ORR1E LTR MaLR -44 326 3 8 1049 24 53 0 0 chr9 60899666 60899704 -63176468 + AT_rich Low_complexity Low_complexity 1 38 0 8 1049 262 253 0 0 chr9 60899711 60899786 -63176386 + L1MA6 LINE L1 6225 6299 -1 8 1049 231 253 13 51 chr9 60900285 60900364 -63175808 + ID4_ SINE ID 4 79 -4 8 1049 353 204 33 22 chr9 60900773 60900863 -63175309 - L1MB5 LINE L1 -34 6140 6050 8 1049 558 0 0 0 chr9 60901047 60901109 -63175063 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 1049 447 184 36 7 chr9 60901595 60901732 -63174440 + GA-rich Low_complexity Low_complexity 5 145 0 8 1049 380 72 0 18 chr9 60903112 60903169 -63173003 + (TCCA)n Simple_repeat Simple_repeat 4 59 0 8 1049 645 14 0 0 chr9 60903210 60903284 -63172888 + (GA)n Simple_repeat Simple_repeat 2 75 0 8 1049 184 122 49 0 chr9 60904750 60904791 -63171381 + CT-rich Low_complexity Low_complexity 3 45 0 8 1049 569 240 0 30 chr9 60905493 60905626 -63170546 - B1F SINE Alu 0 149 21 8 1049 264 246 58 0 chr9 60905734 60905803 -63170369 - MIRb SINE MIR -71 197 125 8 1049 216 0 0 0 chr9 60906096 60906120 -63170052 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1049 565 304 58 94 chr9 60906151 60906420 -63169752 - B4 SINE B4 -4 288 56 8 1049 21 89 0 0 chr9 60906888 60906944 -63169228 + AT_rich Low_complexity Low_complexity 1 56 0 8 1049 1654 32 0 0 chr9 60906944 60907131 -63169041 + B2_Mm1a SINE B2 1 187 -6 8 1049 1115 193 64 0 chr9 60907134 60907336 -63168836 - B3 SINE B2 0 216 2 8 1049 351 308 486 109 chr9 60907487 60907667 -63168505 - B4 SINE B4 0 292 40 8 1049 1472 232 88 6 chr9 60907667 60907997 -63168175 + ORR1E LTR MaLR 1 357 -2 8 1049 351 287 13 145 chr9 60907997 60908038 -63168134 - B4 SINE B4 -253 39 9 8 1049 837 68 86 0 chr9 60908260 60908377 -63167795 + B1_Mur3 SINE Alu 23 149 0 8 1049 211 85 21 21 chr9 60908384 60908432 -63167740 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 8 1049 639 265 132 5 chr9 60908436 60908626 -63167546 - ID_B1 SINE B4 -8 216 3 8 1049 366 261 0 14 chr9 60908956 60909104 -63167068 + L1MA9 LINE L1 5568 5709 -462 8 1049 315 0 0 0 chr9 60909124 60909159 -63167013 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1049 444 99 0 0 chr9 60909159 60909230 -63166942 + (GA)n Simple_repeat Simple_repeat 1 71 0 8 1049 1231 36 0 0 chr9 60909342 60909482 -63166690 - B1_Mus2 SINE Alu -7 140 1 8 1049 596 241 269 10 chr9 60909482 60909779 -63166393 + L1MA9 LINE L1 5939 6312 0 8 1049 229 227 67 22 chr9 60909803 60909893 -63166279 + L1MB5 LINE L1 6072 6165 -9 8 1049 186 71 0 0 chr9 60909896 60909924 -63166248 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 8 1049 203 320 99 31 chr9 60910036 60910169 -63166003 + MIRb SINE MIR 61 208 -60 8 1049 1444 69 0 16 chr9 60910214 60910406 -63165766 + B2_Mm2 SINE B2 2 190 -5 8 1049 197 309 101 20 chr9 60911092 60911191 -63164981 - MIRc SINE MIR -89 179 73 8 1049 441 0 0 0 chr9 60911885 60911934 -63164238 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1049 255 205 102 0 chr9 60912099 60912180 -63163992 + PB1D7 SINE Alu 11 107 -13 8 1049 665 239 117 61 chr9 60912183 60912311 -63163861 + ID_B1 SINE B4 2 150 -74 8 1049 1179 81 0 26 chr9 60912311 60912463 -63163709 + B1_Mus1 SINE Alu 1 148 0 8 1049 665 239 117 61 chr9 60912463 60912530 -63163642 + ID_B1 SINE B4 151 208 -16 8 1049 202 269 30 61 chr9 60912706 60912805 -63163367 + MIRb SINE MIR 125 220 -48 8 1049 520 294 36 5 chr9 60913509 60913704 -63162468 - RMER30 DNA MER1_type 0 202 2 8 1049 248 362 27 47 chr9 60913829 60913977 -63162195 - MLT1A LTR MaLR 0 374 230 8 1049 252 291 25 0 chr9 60914754 60914833 -63161339 + B4 SINE B4 3 83 -209 8 1049 351 291 120 0 chr9 60914830 60914947 -63161225 + ID_B1 SINE B4 81 211 -13 8 1049 264 59 0 0 chr9 60914947 60914981 -63161191 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 8 1049 408 40 0 0 chr9 60915607 60915657 -63160515 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1049 254 50 25 0 chr9 60915882 60915922 -63160250 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 8 1049 1257 41 7 0 chr9 60915928 60916074 -63160098 - B1_Mm SINE Alu 0 147 1 8 1049 230 326 32 63 chr9 60916074 60916169 -63160003 - MER63B DNA AcHobo -9 427 336 8 1049 21 0 0 0 chr9 60918418 60918439 -63157733 + AT_rich Low_complexity Low_complexity 1 21 0 8 1049 205 375 0 8 chr9 60919324 60919453 -63156719 + (TCCA)n Simple_repeat Simple_repeat 4 131 0 8 1049 407 127 0 0 chr9 60919509 60919580 -63156592 - B1_Mur3 SINE Alu 0 149 79 8 1049 396 0 0 0 chr9 60919954 60919998 -63156174 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1049 237 307 137 14 chr9 60920288 60920427 -63155745 - MER104 DNA Tc2 0 181 26 8 1049 684 257 34 93 chr9 60920800 60921036 -63155136 + ID_B1 SINE B4 3 224 0 8 1049 258 229 32 16 chr9 60921306 60921368 -63154804 + MLT1D LTR MaLR 24 86 -419 8 1049 641 316 16 33 chr9 60921399 60921644 -63154528 + MLT1D LTR MaLR 257 497 -8 8 1049 1049 251 50 8 chr9 60921699 60921960 -63154212 + B4A SINE B4 4 275 -17 8 1049 396 0 0 0 chr9 60921966 60922010 -63154162 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1049 1185 194 170 33 chr9 60922039 60922381 -63153791 - MTD LTR MaLR -15 404 25 8 1049 232 78 0 56 chr9 60922383 60922437 -63153735 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 8 1049 342 0 0 0 chr9 60922669 60922707 -63153465 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 8 1049 180 0 0 0 chr9 60922707 60922727 -63153445 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1049 452 353 64 5 chr9 60923368 60923570 -63152602 + MIR SINE MIR 13 226 -36 8 1049 288 0 0 0 chr9 60924210 60924242 -63151930 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1049 606 249 136 78 chr9 60924867 60925215 -63150957 - LTR33A LTR ERVL -4 516 66 8 1049 255 369 70 7 chr9 60925930 60926072 -63150100 - MLT1H LTR MaLR -318 231 81 8 1049 2664 121 18 0 chr9 60926427 60926814 -63149358 + ORR1B1 LTR MaLR 1 394 0 8 1049 278 295 134 94 chr9 60927126 60927425 -63148747 - MLT1J LTR MaLR -103 409 99 8 1049 966 210 10 49 chr9 60927756 60927961 -63148211 - B3A SINE B2 0 198 2 8 1049 837 256 92 103 chr9 60928436 60928815 -63147357 - MTE2a LTR MaLR 0 379 5 8 1049 1152 219 14 0 chr9 60928896 60929106 -63147066 + B3 SINE B2 4 216 0 8 1049 240 306 71 0 chr9 60930375 60930473 -63145699 - MIRm SINE MIR -154 122 18 8 1049 222 259 0 17 chr9 60930553 60930612 -63145560 + GA-rich Low_complexity Low_complexity 2 59 0 8 1049 234 91 0 0 chr9 60930739 60930772 -63145400 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 8 1049 874 250 78 0 chr9 60930774 60930978 -63145194 - ID_B1 SINE B4 -2 222 3 8 1049 215 274 52 37 chr9 60931503 60931590 -63144582 - MIRb SINE MIR -67 201 109 8 1049 288 0 0 0 chr9 60931731 60931763 -63144409 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1049 259 262 74 10 chr9 60931781 60931897 -63144275 + MLT1J LTR MaLR 65 191 -253 8 1049 1143 95 0 0 chr9 60932125 60932272 -63143900 - B1_Mm SINE Alu 0 147 1 8 1049 770 249 46 27 chr9 60933281 60933500 -63142672 - ID_B1 SINE B4 0 224 2 8 1049 292 333 82 77 chr9 60933864 60934046 -63142126 - MER5A DNA MER1_type -5 184 2 8 1049 1133 211 33 74 chr9 60934673 60934944 -63141228 - B4 SINE B4 -26 266 7 8 1049 874 206 159 0 chr9 60936630 60936819 -63139353 + ID_B1 SINE B4 3 221 -3 8 1049 268 180 66 0 chr9 60936822 60936883 -63139289 + (CATG)n Simple_repeat Simple_repeat 3 67 0 8 1049 429 20 0 0 chr9 60937512 60937562 -63138610 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1049 656 281 31 126 chr9 60937562 60937855 -63138317 - B4 SINE B4 -26 266 2 8 1049 744 272 81 94 chr9 60938242 60938624 -63137548 + MTE2a LTR MaLR 1 377 -2 8 1049 521 311 113 6 chr9 60939238 60939541 -63136631 - Tigger5 DNA MER2_type -2143 263 6 8 1049 223 319 106 62 chr9 60939543 60939646 -63136526 - MIRm SINE MIR -16 260 161 8 1049 475 325 88 8 chr9 60939646 60939897 -63136275 - B4A SINE B4 -18 274 4 8 1049 223 319 106 62 chr9 60939897 60940020 -63136152 - MIRm SINE MIR -116 160 24 8 1049 233 250 51 38 chr9 60940129 60940208 -63135964 + MIRc SINE MIR 102 181 -87 8 1049 587 280 25 25 chr9 60940327 60940488 -63135684 + RSINE1 SINE B4 5 165 0 8 1049 1115 240 62 103 chr9 60942421 60942626 -63133546 + MTE2a LTR MaLR 1 187 -192 8 1049 192 77 0 0 chr9 60942626 60942652 -63133520 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 8 1049 1115 240 62 103 chr9 60942652 60942836 -63133336 + MTE2a LTR MaLR 188 373 -6 8 1049 755 236 19 0 chr9 60942841 60943002 -63133170 - ID_B1 SINE B4 -56 168 5 8 1049 225 310 34 11 chr9 60943467 60943555 -63132617 - MLT1A LTR MaLR -36 354 265 8 1049 267 307 33 22 chr9 60943686 60943776 -63132396 - MLT1A LTR MaLR -283 91 1 8 1049 288 324 231 0 chr9 60944237 60944345 -63131827 + MTEa LTR MaLR 2 134 -245 8 1049 309 289 223 35 chr9 60944345 60944632 -63131540 + MT2A LTR ERVL 182 522 -11 8 1049 299 293 122 46 chr9 60944893 60945090 -63131082 - LTR81B LTR ERV1? -1170 223 12 8 1049 244 239 29 29 chr9 60945249 60945318 -63130854 + CT-rich Low_complexity Low_complexity 6 74 0 8 1049 331 230 231 56 chr9 60945328 60945471 -63130701 - ID_B1 SINE B4 -54 170 3 8 1049 669 11 33 0 chr9 60945528 60945618 -63130554 + (TG)n Simple_repeat Simple_repeat 1 93 0 8 1049 214 356 32 75 chr9 60945642 60945736 -63130436 - L2b LINE L2 -2 3373 3284 8 1049 687 260 82 16 chr9 60946504 60946688 -63129484 - B3A SINE B2 0 198 3 9 1049 432 0 0 0 chr9 60946705 60946753 -63129419 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1049 1114 265 22 7 chr9 60946766 60947036 -63129136 - B4A SINE B4 -8 284 11 9 1049 246 345 26 33 chr9 60947061 60947214 -63128958 + MIR3 SINE MIR 57 208 0 9 1049 270 160 0 0 chr9 60947853 60947903 -63128269 + CT-rich Low_complexity Low_complexity 4 53 0 9 1049 666 296 143 8 chr9 60948139 60948391 -63127781 - B4A SINE B4 -4 288 3 9 131 635 247 25 112 chr9 60948437 60948633 -63127539 - B3A SINE B2 -13 182 4 9 1050 387 0 0 0 chr9 60948703 60948746 -63127426 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1050 339 25 0 0 chr9 60949170 60949210 -63126962 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1050 770 281 25 111 chr9 60949229 60949445 -63126727 - B4 SINE B4 -1 291 99 9 1050 693 193 74 0 chr9 60949445 60949580 -63126592 - B1_Mur1 SINE Alu -3 146 2 9 1050 770 281 25 111 chr9 60949580 60949679 -63126493 - B4 SINE B4 -194 98 3 9 1050 348 234 20 50 chr9 60950017 60950116 -63126056 - MER5A1 DNA MER1_type -70 96 1 9 1050 245 217 126 46 chr9 60951945 60952032 -63124140 + RLTR18 LTR ERVK 480 573 -43 9 1050 206 339 83 25 chr9 60952095 60952216 -63123956 + MIR SINE MIR 39 166 -96 9 1050 191 298 85 19 chr9 60953844 60953950 -63122222 - L2 LINE L2 -500 2919 2807 9 1050 838 211 75 50 chr9 60954326 60954526 -63121646 + B3 SINE B2 1 205 -11 9 1050 252 0 0 0 chr9 60954632 60954660 -63121512 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1050 1218 55 0 7 chr9 60954660 60954799 -63121373 - B1_Mus1 SINE Alu -9 139 1 9 1050 360 0 0 0 chr9 60954832 60954872 -63121300 + (TC)n Simple_repeat Simple_repeat 1 40 0 9 1050 606 14 0 0 chr9 60954872 60954942 -63121230 + (CA)n Simple_repeat Simple_repeat 1 71 0 9 1050 327 267 105 0 chr9 60954951 60955056 -63121116 - RSINE1 SINE B4 -37 128 13 9 1050 1084 294 73 57 chr9 60955086 60955171 -63121001 - L1ME2 LINE L1 -17 6162 6078 9 1050 387 0 0 0 chr9 60955171 60955214 -63120958 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1050 1116 284 75 49 chr9 60955214 60955336 -63120836 - L1ME2 LINE L1 -102 6077 5962 9 1050 1071 242 129 20 chr9 60955336 60955677 -63120495 + MTEa LTR MaLR 1 378 -1 9 1050 1116 281 76 46 chr9 60955677 60955949 -63120223 - L1ME2 LINE L1 -198 5966 5676 9 1050 432 0 0 0 chr9 60955949 60955997 -63120175 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1050 1116 281 76 46 chr9 60955997 60956335 -63119837 - L1ME2 LINE L1 -489 5675 5332 9 1050 193 75 0 48 chr9 60956358 60956400 -63119772 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1050 318 123 0 0 chr9 60956402 60956459 -63119713 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 9 1050 315 0 0 0 chr9 60956462 60956497 -63119675 + (TA)n Simple_repeat Simple_repeat 1 35 0 9 1050 261 0 0 0 chr9 60956496 60956525 -63119647 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 1050 683 195 16 0 chr9 60956525 60956648 -63119524 - RSINE1 SINE B4 -40 125 1 9 1050 1061 261 101 18 chr9 60956683 60957019 -63119153 + ORR1D2 LTR MaLR 3 366 -4 9 1050 181 366 0 14 chr9 60957335 60957407 -63118765 - L4 LINE RTE -250 1779 1709 9 1050 633 208 191 32 chr9 60957732 60957921 -63118251 - ID_B1 SINE B4 -5 219 1 9 1050 300 229 89 50 chr9 60958003 60958104 -63118068 + MER5B DNA MER1_type 25 129 -49 9 1050 432 0 0 0 chr9 60958145 60958193 -63117979 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1050 732 263 109 20 chr9 60958237 60958485 -63117687 + B4 SINE B4 2 271 -21 9 1050 561 52 0 0 chr9 60958519 60958596 -63117576 + (CAGA)n Simple_repeat Simple_repeat 4 80 0 9 1050 258 329 0 0 chr9 60958599 60958669 -63117503 + GA-rich Low_complexity Low_complexity 4 73 0 9 1050 29 28 0 0 chr9 60959375 60959411 -63116761 + AT_rich Low_complexity Low_complexity 1 36 0 9 1050 252 0 0 0 chr9 60959698 60959726 -63116446 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1050 336 102 0 0 chr9 60962633 60962682 -63113490 + (TCC)n Simple_repeat Simple_repeat 2 50 0 9 1050 781 224 0 25 chr9 60962792 60962952 -63113220 - B4 SINE B4 -136 156 1 9 1050 1139 204 171 3 chr9 60963112 60963398 -63112774 - MTE2a LTR MaLR -27 352 19 9 1050 182 272 95 32 chr9 60964050 60964145 -63112027 + L3 LINE CR1 3026 3126 -1363 9 1050 1134 126 85 72 chr9 60964441 60964664 -63111508 - URR1A DNA MER1_type 0 226 1 9 1050 262 222 0 18 chr9 60964707 60964762 -63111410 - MLT1F LTR MaLR -7 553 500 9 1050 256 304 51 0 chr9 60964767 60964846 -63111326 + ID SINE ID 2 84 -140 9 1050 710 265 81 23 chr9 60965077 60965336 -63110836 - MLT1F LTR MaLR -156 392 119 9 1050 355 295 0 13 chr9 60965613 60965692 -63110480 + ID4 SINE ID 1 78 -5 9 1050 234 191 0 0 chr9 60965693 60965740 -63110432 + (TAA)n Simple_repeat Simple_repeat 3 49 0 9 1050 751 285 20 20 chr9 60965782 60965817 -63110355 - B3A SINE B2 -1 197 165 9 1050 246 125 0 0 chr9 60965817 60965865 -63110307 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1050 751 285 20 20 chr9 60965865 60966026 -63110146 - B3A SINE B2 -34 164 1 9 1050 185 274 214 0 chr9 60966143 60966227 -63109945 - MIRm SINE MIR -135 141 40 9 1050 352 308 23 8 chr9 60966789 60966920 -63109252 - RMER20B LTR ERVK -264 363 231 9 1050 251 319 99 47 chr9 60967640 60967831 -63108341 - MIRc SINE MIR -16 252 52 9 1050 387 0 0 0 chr9 60968204 60968247 -63107925 + (TC)n Simple_repeat Simple_repeat 1 43 0 9 1050 351 0 0 0 chr9 60968247 60968285 -63107887 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1050 986 169 0 7 chr9 60968635 60968784 -63107388 - B1_Mur2 SINE Alu 0 149 2 9 1050 489 34 0 0 chr9 60969304 60969363 -63106809 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1050 335 272 36 109 chr9 60969518 60969683 -63106489 - HAL1-3A_ME LINE L1 -423 2435 2283 9 1050 515 15 15 0 chr9 60971040 60971094 -63105078 + (GA)n Simple_repeat Simple_repeat 2 55 0 9 1050 654 13 0 0 chr9 60971094 60971169 -63105003 + (GAA)n Simple_repeat Simple_repeat 3 77 0 9 1050 515 15 15 0 chr9 60971169 60971180 -63104992 + (GA)n Simple_repeat Simple_repeat 2 13 0 9 1050 510 96 0 0 chr9 60971180 60971253 -63104919 + (TATG)n Simple_repeat Simple_repeat 3 75 0 9 1050 581 260 61 7 chr9 60971292 60971439 -63104733 - RMER30 DNA MER1_type -2 200 46 9 1050 386 247 82 10 chr9 60971586 60971684 -63104488 - PB1D10 SINE Alu 0 117 13 9 1050 279 0 0 0 chr9 60972528 60972559 -63103613 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 1050 423 211 12 199 chr9 60972560 60972726 -63103446 - B4A SINE B4 0 292 158 9 1050 229 337 32 11 chr9 60973122 60973215 -63102957 + MIR SINE MIR 35 129 -79 9 1050 562 262 132 66 chr9 60974294 60974551 -63101621 + B4 SINE B4 1 274 -18 9 1050 378 85 0 0 chr9 60974563 60974622 -63101550 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1050 414 0 0 0 chr9 60974704 60974750 -63101422 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1050 229 270 225 0 chr9 60974753 60974842 -63101330 + PB1D10 SINE Alu 1 109 -8 9 1050 407 92 0 15 chr9 60975202 60975268 -63100904 + (TG)n Simple_repeat Simple_repeat 1 65 0 9 1050 394 346 83 87 chr9 60975268 60975556 -63100616 - B4A SINE B4 -3 289 3 9 1050 254 299 120 30 chr9 60975682 60975782 -63100390 + PB1D10 SINE Alu 1 109 -8 9 1050 769 158 24 0 chr9 60975784 60975911 -63100261 - B1_Mur2 SINE Alu -7 142 13 9 1050 440 396 0 0 chr9 60975983 60976152 -63100020 + C-rich Low_complexity Low_complexity 2 170 0 9 1050 230 210 109 31 chr9 60976260 60976324 -63099848 + MLT1B LTR MaLR 18 86 -304 9 1050 363 105 0 0 chr9 60976408 60976465 -63099707 + (TTCA)n Simple_repeat Simple_repeat 2 58 0 9 1050 627 208 100 0 chr9 60976479 60976609 -63099563 - B1_Mur3 SINE Alu 0 149 7 9 1050 393 288 97 55 chr9 60976609 60976700 -63099472 - ID_B1 SINE B4 0 224 5 9 1050 205 175 25 0 chr9 60977161 60977201 -63098971 + G-rich Low_complexity Low_complexity 2 42 0 9 1050 231 36 0 0 chr9 60977456 60977484 -63098688 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 9 1050 291 282 47 39 chr9 60977550 60977718 -63098454 + MIRc SINE MIR 11 183 -79 9 1050 259 181 14 14 chr9 60979191 60979264 -63096908 + CT-rich Low_complexity Low_complexity 2 74 0 9 1050 216 0 0 0 chr9 60979266 60979290 -63096882 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 9 1050 1211 69 0 0 chr9 60979291 60979436 -63096736 - B1_Mus2 SINE Alu -1 146 2 9 1050 911 252 63 2 chr9 60979436 60979642 -63096530 - ID_B1 SINE B4 -67 225 1 9 1050 227 238 59 59 chr9 60979659 60979744 -63096428 - PB1D10 SINE Alu -51 98 14 9 1050 2272 158 70 13 chr9 60980517 60980915 -63095257 + MTC LTR MaLR 1 421 0 9 1050 747 261 117 0 chr9 60981470 60981658 -63094514 + B4A SINE B4 1 210 -82 9 1050 231 266 108 78 chr9 60981667 60981769 -63094403 + MTC LTR MaLR 10 114 -307 9 1050 762 231 30 56 chr9 60981737 60981934 -63094238 - MTD LTR MaLR -218 201 10 9 1050 559 256 444 0 chr9 60982869 60983065 -63093107 + B4 SINE B4 5 287 -5 9 1050 378 0 0 0 chr9 60983088 60983130 -63093042 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1050 252 275 14 14 chr9 60983186 60983256 -63092916 + (CACG)n Simple_repeat Simple_repeat 4 73 0 9 1050 216 67 0 0 chr9 60983563 60983593 -63092579 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 9 1050 2527 126 80 0 chr9 60984323 60984713 -63091459 + MTC LTR MaLR 1 421 0 9 1050 532 148 26 0 chr9 60985067 60985182 -63090990 - Lx9 LINE L1 -1 7643 7526 9 1050 297 0 0 0 chr9 60985189 60985222 -63090950 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1050 329 173 193 35 chr9 60985223 60985265 -63090907 - Lx9 LINE L1 -164 7480 7419 9 1050 180 0 0 0 chr9 60985265 60985285 -63090887 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1050 180 0 0 0 chr9 60985285 60985304 -63090868 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1050 329 173 193 35 chr9 60985304 60985374 -63090798 - Lx9 LINE L1 -226 7418 7350 9 1050 904 136 0 64 chr9 60985390 60985547 -63090625 - B1_Mur4 SINE Alu -1 149 3 1 1050 23 0 0 0 chr9 60985549 60985572 -63090600 + AT_rich Low_complexity Low_complexity 1 23 0 1 1050 600 310 106 12 chr9 60985582 60985922 -63090250 + L1MB7 LINE L1 5793 6164 -20 1 1050 588 53 0 0 chr9 60985922 60985998 -63090174 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1050 205 71 0 87 chr9 60986242 60986288 -63089884 + (CGGGG)n Simple_repeat Simple_repeat 3 44 0 1 1050 293 215 139 0 chr9 60986760 60986839 -63089333 + MIRc SINE MIR 65 154 -114 1 1050 617 282 0 20 chr9 60987310 60987462 -63088710 + RSINE1 SINE B4 2 150 -15 1 1050 293 0 27 0 chr9 60987466 60987503 -63088669 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1050 621 40 0 0 chr9 60987503 60987578 -63088594 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1050 733 266 153 4 chr9 60987608 60987857 -63088315 + B4 SINE B4 3 288 -4 1 1050 1589 222 88 8 chr9 60988351 60988727 -63087445 + MTD LTR MaLR 14 419 0 1 1050 246 105 0 0 chr9 60988836 60988874 -63087298 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1050 230 365 93 61 chr9 60989483 60989559 -63086613 + L3 LINE CR1 3745 3834 -655 1 1050 513 0 0 0 chr9 60989559 60989616 -63086556 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1050 230 365 93 61 chr9 60989616 60990064 -63086108 + L3 LINE CR1 3835 4286 -203 1 1050 240 59 0 0 chr9 60990064 60990098 -63086074 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1050 324 0 0 0 chr9 60990147 60990183 -63085989 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1050 385 346 81 29 chr9 60990783 60991164 -63085008 - L1M5 LINE L1 -307 5817 5417 1 1050 228 207 16 49 chr9 60991175 60991236 -63084936 - LTR29 LTR ERV1 -100 522 464 1 1050 791 192 0 5 chr9 60991403 60991625 -63084547 + (CA)n Simple_repeat Simple_repeat 1 220 0 1 1050 950 296 21 13 chr9 60991892 60992125 -63084047 - B4A SINE B4 0 292 58 1 1050 21 36 0 0 chr9 60993344 60993372 -63082800 + AT_rich Low_complexity Low_complexity 1 28 0 1 1050 719 237 51 28 chr9 60993398 60993576 -63082596 - B3A SINE B2 -16 182 1 1 1050 240 338 135 18 chr9 60993922 60994082 -63082090 + MT2A LTR ERVL 39 217 -316 1 1050 1092 167 103 0 chr9 60994082 60994286 -63081886 + URR1A DNA MER1_type 2 226 0 1 1050 747 329 62 7 chr9 60994293 60994581 -63081591 + MT2A LTR ERVL 230 533 0 1 1050 250 215 237 0 chr9 60994738 60994831 -63081341 + MIR SINE MIR 33 147 -115 1 1050 6180 63 0 0 chr9 60995450 60996257 -63079915 - L1_Mm LINE L1 -377 5506 4700 1 1050 1342 37 0 0 chr9 60996256 60996417 -63079755 + L1Md_F2 LINE L1 5426 5586 -297 1 1050 8284 45 2 3 chr9 60996417 60997414 -63078758 + L1Md_F2 LINE L1 5587 6582 0 1 1050 246 322 0 139 chr9 60998323 60998424 -63077748 - B4A SINE B4 -205 87 1 1 1050 1116 253 53 53 chr9 60998778 60999133 -63077039 + ORR1E LTR MaLR 5 359 0 1 1050 272 329 33 26 chr9 60999314 60999467 -63076705 + MLT1K LTR MaLR 441 594 -1 1 1050 780 276 12 45 chr9 61000470 61000702 -63075470 - B4 SINE B4 -2 290 83 1 1050 989 184 38 0 chr9 61000713 61000898 -63075274 - B3 SINE B2 -2 214 23 2 1050 1002 128 0 22 chr9 61000920 61001104 -63075068 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1050 872 148 11 17 chr9 61001109 61001466 -63074706 + CT-rich Low_complexity Low_complexity 1 354 0 4 1050 1131 90 11 11 chr9 61001468 61001648 -63074524 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1050 259 355 78 39 chr9 61002298 61002427 -63073745 + L2b LINE L2 3241 3374 -1 6 1050 696 107 0 0 chr9 61002928 61003040 -63073132 + (GA)n Simple_repeat Simple_repeat 1 112 0 7 1050 520 266 34 45 chr9 61004355 61004532 -63071640 - B4 SINE B4 0 292 118 8 1050 564 302 64 4 chr9 61004771 61005004 -63071168 - Lx8 LINE L1 -341 7132 6886 9 1050 432 0 0 0 chr9 61005411 61005459 -63070713 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1050 208 163 10 58 chr9 61005584 61005596 -63070576 + A-rich Low_complexity Low_complexity 4 15 0 1 1050 438 188 178 0 chr9 61005596 61005697 -63070475 + PB1D9 SINE Alu 2 120 0 1 1050 208 163 10 58 chr9 61005697 61005788 -63070384 + A-rich Low_complexity Low_complexity 16 102 0 1 1050 276 242 0 114 chr9 61005825 61005895 -63070277 + RSINE1 SINE B4 104 165 0 1 1050 229 316 42 0 chr9 61007014 61007109 -63069063 - MIRc SINE MIR -124 144 46 1 1050 23 0 0 0 chr9 61007295 61007318 -63068854 + AT_rich Low_complexity Low_complexity 1 23 0 1 1050 525 285 134 46 chr9 61007948 61008209 -63067963 + B4 SINE B4 2 285 -7 1 1050 24 0 0 0 chr9 61008240 61008264 -63067908 + AT_rich Low_complexity Low_complexity 1 24 0 1 1050 195 333 14 42 chr9 61008572 61008644 -63067528 + L2c LINE L2 3303 3372 -15 1 1050 324 312 0 61 chr9 61009392 61009507 -63066665 - MIR SINE MIR -115 153 48 2 1050 432 0 0 0 chr9 61009732 61009780 -63066392 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1050 306 0 0 0 chr9 61009780 61009813 -63066359 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1050 787 299 95 8 chr9 61009815 61010058 -63066114 - B4A SINE B4 -28 264 1 2 1050 528 325 45 78 chr9 61010804 61011054 -63065118 - MLT1K LTR MaLR -236 359 91 2 1050 1285 262 60 3 chr9 61011220 61011568 -63064604 + MTEb LTR MaLR 5 372 -7 2 1050 244 23 93 0 chr9 61013253 61013296 -63062876 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 1050 23 0 0 0 chr9 61013372 61013395 -63062777 + AT_rich Low_complexity Low_complexity 1 23 0 2 1050 209 57 0 28 chr9 61013409 61013445 -63062727 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1050 656 248 15 0 chr9 61013445 61013582 -63062590 - B1_Mur3 SINE Alu -10 139 1 2 1050 1003 257 28 0 chr9 61013582 61013800 -63062372 - B4A SINE B4 -62 230 7 3 1050 333 230 192 35 chr9 61014448 61014603 -63061569 + B3A SINE B2 35 197 -1 3 1050 207 0 0 0 chr9 61015009 61015032 -63061140 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1050 194 289 80 30 chr9 61015237 61015337 -63060835 - L3 LINE CR1 -11 4478 4374 3 1050 186 250 65 103 chr9 61015722 61015829 -63060343 + L4 LINE RTE 507 609 -1420 3 1050 495 0 0 0 chr9 61015919 61015974 -63060198 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1050 872 262 113 21 chr9 61015981 61016219 -63059953 - B4 SINE B4 -32 260 1 3 1050 233 227 0 0 chr9 61016451 61016495 -63059677 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 3 1050 887 299 62 23 chr9 61017335 61017643 -63058529 - L3 LINE CR1 -616 3873 3554 3 1050 664 269 100 48 chr9 61018569 61018838 -63057334 - B4A SINE B4 -7 285 3 3 1050 244 236 0 35 chr9 61018960 61019017 -63057155 - MIRb SINE MIR -93 175 121 3 1050 492 291 19 0 chr9 61019306 61019409 -63056763 - B3A SINE B2 -93 105 1 4 1050 242 234 108 15 chr9 61019422 61019487 -63056685 + MLT1A1 LTR MaLR 10 80 -328 4 1050 1082 244 63 67 chr9 61020265 61020581 -63055591 + MTD LTR MaLR 1 315 -104 4 1050 357 24 0 0 chr9 61020583 61020625 -63055547 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 4 1050 356 335 40 40 chr9 61021390 61021564 -63054608 - MER5B DNA MER1_type -4 174 1 4 1050 650 187 0 6 chr9 61021750 61021906 -63054266 + (CA)n Simple_repeat Simple_repeat 1 155 0 4 1050 208 230 47 47 chr9 61022274 61022338 -63053834 - MIRb SINE MIR -87 181 118 4 1050 1004 238 58 147 chr9 61022561 61022941 -63053231 - MTD LTR MaLR -28 391 46 4 1050 608 178 270 79 chr9 61023075 61023264 -63052908 - URR1A DNA MER1_type -1 225 1 4 1050 426 247 59 91 chr9 61023818 61024005 -63052167 - HAL1-2a_MD LINE L1 -499 2525 2345 4 1050 386 354 95 32 chr9 61025303 61025796 -63050376 + HAL1 LINE L1 95 618 -1889 5 1050 539 252 0 24 chr9 61025972 61026098 -63050074 + B1F1 SINE Alu 27 149 0 5 1050 349 284 0 0 chr9 61026099 61026173 -63049999 + polypurine Low_complexity Low_complexity 2 75 0 5 1050 736 159 13 7 chr9 61026173 61026325 -63049847 + GA-rich Low_complexity Low_complexity 2 154 0 5 1050 941 33 17 0 chr9 61026325 61026445 -63049727 + (GGAAA)n Simple_repeat Simple_repeat 4 125 0 5 1050 247 234 43 86 chr9 61026867 61026984 -63049188 + HAL1 LINE L1 2189 2300 -207 5 1050 303 258 69 40 chr9 61027171 61027272 -63048900 + MIRb SINE MIR 53 156 -112 5 1050 1146 181 23 32 chr9 61027276 61027493 -63048679 + B3 SINE B2 1 215 -1 5 1050 694 250 0 13 chr9 61027996 61028154 -63048018 - B3 SINE B2 -6 210 55 5 1050 26 30 0 0 chr9 61028545 61028578 -63047594 + AT_rich Low_complexity Low_complexity 1 33 0 5 1050 992 232 0 0 chr9 61028587 61028751 -63047421 - RSINE1 SINE B4 0 165 2 6 1050 395 103 14 42 chr9 61028811 61028882 -63047290 + B1_Mur4 SINE Alu 80 148 -2 6 1050 243 0 0 0 chr9 61028900 61028927 -63047245 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1050 377 319 109 62 chr9 61029279 61029497 -63046675 + L1MD2 LINE L1 5309 5546 -696 6 1050 810 211 10 51 chr9 61029497 61029692 -63046480 + B3A SINE B2 2 188 -10 6 1050 377 319 109 62 chr9 61029692 61029777 -63046395 + L1MD2 LINE L1 5547 5626 -616 6 1050 251 232 0 79 chr9 61029836 61029925 -63046247 + L1M5 LINE L1 5691 5772 -392 6 1050 391 330 67 39 chr9 61030011 61030191 -63045981 + L1MD2 LINE L1 5852 6036 -323 6 1050 293 68 23 0 chr9 61030192 61030236 -63045936 + (AGGGGG)n Simple_repeat Simple_repeat 6 50 0 6 1050 218 322 0 0 chr9 61030589 61030648 -63045524 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1050 310 160 0 0 chr9 61030721 61030771 -63045401 - B4A SINE B4 -86 206 157 6 1050 367 281 136 64 chr9 61030783 61031034 -63045138 + L1MC4 LINE L1 7275 7543 -499 6 1050 265 125 0 35 chr9 61031141 61031199 -63044973 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1050 218 370 62 8 chr9 61031829 61031957 -63044215 + MIRc SINE MIR 26 160 -108 7 1050 386 346 0 0 chr9 61031972 61032073 -63044099 - PB1D10 SINE Alu -16 101 1 7 1050 2648 150 7 2 chr9 61032152 61032560 -63043612 - MTC LTR MaLR -5 416 7 7 1050 322 185 25 25 chr9 61032637 61032759 -63043413 + (CATA)n Simple_repeat Simple_repeat 1 122 0 7 1050 639 97 17 9 chr9 61032804 61032919 -63043253 + (CATA)n Simple_repeat Simple_repeat 1 116 0 7 1050 240 111 0 0 chr9 61032966 61033002 -63043170 + (CATA)n Simple_repeat Simple_repeat 1 36 0 7 1050 342 270 31 19 chr9 61033015 61033177 -63042995 + (TCCA)n Simple_repeat Simple_repeat 3 166 0 7 1050 2839 125 42 11 chr9 61033800 61034252 -63041920 - RMER4A LTR ERVK 0 466 1 7 1050 254 204 56 0 chr9 61035308 61035362 -63040810 - MTE2b LTR MaLR -2 377 321 7 1050 588 250 24 0 chr9 61035369 61035493 -63040679 + RSINE1 SINE B4 9 135 -30 7 1050 306 107 0 0 chr9 61035498 61035554 -63040618 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1050 1299 246 53 59 chr9 61035567 61035922 -63040250 - MTE2b LTR MaLR -24 355 3 7 1050 225 0 0 0 chr9 61036373 61036398 -63039774 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 8 1050 828 173 16 0 chr9 61036432 61036559 -63039613 - B3 SINE B2 -86 130 2 8 1050 3222 205 44 9 chr9 61036585 61037285 -63038887 - RCHARR1 DNA MER1_type 0 974 250 8 1050 615 248 62 7 chr9 61037348 61037482 -63038690 + B4A SINE B4 94 235 -57 8 1050 508 307 135 31 chr9 61037482 61037741 -63038431 + B4A SINE B4 3 288 -4 8 1050 218 255 0 0 chr9 61037749 61037796 -63038376 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1050 279 0 0 0 chr9 61038490 61038521 -63037651 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1050 1202 284 41 35 chr9 61038633 61039049 -63037123 + RLTR16 LTR ERVK 4 491 -14 8 1050 339 218 0 0 chr9 61039179 61039257 -63036915 + HAL1 LINE L1 1569 1646 -861 8 1050 597 278 256 0 chr9 61039300 61039527 -63036645 - B4A SINE B4 -6 286 2 8 1050 305 325 87 58 chr9 61039606 61039812 -63036360 - MIR SINE MIR 0 262 51 9 1050 1202 248 7 30 chr9 61039814 61040084 -63036088 + B4 SINE B4 2 265 -27 9 1050 1495 270 75 5 chr9 61040095 61040471 -63035701 + MTD LTR MaLR 18 419 0 9 1050 582 15 0 0 chr9 61040523 61040590 -63035582 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 1050 368 304 49 3 chr9 61040667 61040866 -63035306 + L1MEe LINE L1 1521 1774 -733 9 1050 387 278 107 41 chr9 61041067 61041311 -63034861 + L1MA6 LINE L1 6039 6298 -2 9 1050 245 359 0 37 chr9 61041389 61041496 -63034676 - MLT1E2 LTR MaLR -399 228 126 9 1050 360 169 230 46 chr9 61041496 61041583 -63034589 + RSINE1 SINE B4 3 105 -60 9 1050 414 0 0 0 chr9 61041584 61041630 -63034542 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1050 217 324 41 54 chr9 61042163 61042289 -63033883 + MIR SINE MIR 90 215 -61 9 1050 387 0 0 0 chr9 61043421 61043464 -63032708 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1050 1057 246 64 39 chr9 61043543 61043747 -63032425 + B4 SINE B4 1 214 -78 1 1050 207 0 0 0 chr9 61043747 61043770 -63032402 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1 1050 1057 246 64 39 chr9 61043770 61043848 -63032324 + B4 SINE B4 215 290 -2 1 1050 242 286 11 21 chr9 61043850 61043943 -63032229 + (CATA)n Simple_repeat Simple_repeat 1 92 0 1 1050 845 193 14 0 chr9 61044143 61044283 -63031889 + B1_Mur2 SINE Alu 1 142 -7 1 1050 225 331 44 55 chr9 61044358 61044387 -63031785 - B2_Mm2 SINE B2 -10 185 10 1 1050 595 264 20 7 chr9 61044387 61044536 -63031636 - RSINE1 SINE B4 -4 161 11 1 1050 492 276 146 0 chr9 61044594 61044717 -63031455 - RSINE1 SINE B4 -13 152 12 1 1050 501 313 112 51 chr9 61044731 61045243 -63030929 - L1ME3 LINE L1 -45 6117 5569 1 1050 188 366 21 95 chr9 61045565 61045755 -63030417 - MER5B DNA MER1_type -2 176 1 1 1050 483 118 0 0 chr9 61046711 61046787 -63029385 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1050 225 198 37 0 chr9 61046842 61046923 -63029249 + CT-rich Low_complexity Low_complexity 1 84 0 1 1050 468 0 0 0 chr9 61046925 61046977 -63029195 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1050 1002 41 0 0 chr9 61047481 61047604 -63028568 + (TC)n Simple_repeat Simple_repeat 1 123 0 1 1050 220 339 66 41 chr9 61047916 61048113 -63028059 + MIRc SINE MIR 52 253 -15 1 1050 351 0 0 0 chr9 61048738 61048777 -63027395 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1050 408 20 0 0 chr9 61048777 61048825 -63027347 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1050 220 200 0 0 chr9 61048825 61048875 -63027297 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 1 1050 824 262 31 16 chr9 61048878 61049072 -63027100 - B3A SINE B2 0 198 2 1 1050 204 158 0 0 chr9 61050273 61050311 -63025861 + CT-rich Low_complexity Low_complexity 1 38 0 1 1050 897 117 0 0 chr9 61050539 61050676 -63025496 + (TG)n Simple_repeat Simple_repeat 1 137 0 1 1050 278 102 24 71 chr9 61050765 61050849 -63025323 + (TCTCTG)n Simple_repeat Simple_repeat 4 83 0 1 1050 388 244 133 30 chr9 61051406 61051541 -63024631 + B1F SINE Alu 1 149 0 1 1050 265 333 0 0 chr9 61051541 61051622 -63024550 + ID4_ SINE ID 2 82 -1 1 1050 615 175 22 26 chr9 61051622 61051851 -63024321 + GA-rich Low_complexity Low_complexity 1 227 0 1 1050 312 283 26 78 chr9 61052123 61052238 -63023934 + L2b LINE L2 3265 3373 -2 1 1050 962 162 0 6 chr9 61053540 61053720 -63022452 + CT-rich Low_complexity Low_complexity 2 180 0 1 1050 346 275 57 29 chr9 61054031 61054136 -63022036 + PB1D10 SINE Alu 9 116 -1 1 1050 781 277 15 10 chr9 61054169 61054373 -63021799 + ID_B1 SINE B4 3 207 -17 1 1050 269 109 22 0 chr9 61054393 61054439 -63021733 + (GGGA)n Simple_repeat Simple_repeat 2 48 0 1 1050 216 0 0 0 chr9 61054688 61054712 -63021460 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1050 1202 166 228 59 chr9 61055611 61055931 -63020241 + ORR1D1 LTR MaLR 1 374 0 1 1050 762 276 52 0 chr9 61056146 61056356 -63019816 + ID_B1 SINE B4 3 223 -1 1 1050 489 211 22 11 chr9 61056498 61056589 -63019583 - RSINE1 SINE B4 -12 153 62 1 1050 23 0 0 0 chr9 61057118 61057141 -63019031 + GC_rich Low_complexity Low_complexity 1 23 0 1 1050 988 224 72 93 chr9 61057245 61057535 -63018637 + B4A SINE B4 1 284 -8 1 1050 405 0 0 0 chr9 61057586 61057631 -63018541 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1050 1115 256 58 40 chr9 61058089 61058467 -63017705 - Lx8 LINE L1 -2 7471 7087 1 1050 947 230 19 28 chr9 61059092 61059307 -63016865 - B3 SINE B2 -3 213 1 1 1050 231 305 98 30 chr9 61059583 61059715 -63016457 - L1M5 LINE L1 -563 5561 5421 1 1050 358 217 98 65 chr9 61059941 61060064 -63016108 - B1F SINE Alu 0 149 23 1 1050 314 284 76 85 chr9 61060114 61060399 -63015773 - B4A SINE B4 -11 281 2 1 1050 276 188 0 0 chr9 61060416 61060485 -63015687 + (TGGA)n Simple_repeat Simple_repeat 1 69 0 1 1050 484 294 19 81 chr9 61061176 61061387 -63014785 + B3A SINE B2 1 198 0 1 1050 828 373 37 86 chr9 61061604 61062201 -63013971 + MLT1G3 LTR MaLR 1 572 -23 1 1050 2496 185 107 14 chr9 61062201 61062689 -63013483 + MT2A LTR ERVL 1 533 0 1 1050 828 373 37 86 chr9 61062689 61062707 -63013465 + MLT1G3 LTR MaLR 573 586 -9 1 1050 450 0 0 0 chr9 61062973 61063023 -63013149 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1050 22 0 0 0 chr9 61063175 61063197 -63012975 + GC_rich Low_complexity Low_complexity 1 22 0 1 1050 1011 279 82 32 chr9 61064878 61065193 -63010979 - MTE2a LTR MaLR 0 379 49 1 1050 423 276 0 10 chr9 61066832 61066931 -63009241 + RSINE1 SINE B4 3 100 -65 1 1050 780 231 7 7 chr9 61066941 61067089 -63009083 + B1_Mur1 SINE Alu 2 149 0 1 1050 792 138 0 0 chr9 61067102 61067232 -63008940 + (GA)n Simple_repeat Simple_repeat 1 130 0 1 1050 215 325 67 67 chr9 61067474 61067609 -63008563 + MIR SINE MIR 16 150 -58 1 1050 348 295 19 19 chr9 61068229 61068336 -63007836 + B4A SINE B4 17 123 -169 1 1050 234 345 74 16 chr9 61068348 61068469 -63007703 + B4 SINE B4 160 287 -5 1 1050 1439 268 31 31 chr9 61069448 61069806 -63006366 - MTE2b LTR MaLR -21 358 1 1 1050 270 0 0 0 chr9 61070307 61070337 -63005835 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1050 180 0 0 0 chr9 61070337 61070356 -63005816 + (CG)n Simple_repeat Simple_repeat 2 21 0 1 1050 1331 221 40 140 chr9 61070917 61071338 -63004834 + MTE2a LTR MaLR 1 379 0 1 1050 573 52 0 0 chr9 61071801 61071878 -63004294 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 1 1050 211 175 0 34 chr9 61071880 61071939 -63004233 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1050 512 273 119 0 chr9 61072260 61072403 -63003769 - RMER30 DNA MER1_type -34 168 9 1 1050 233 234 21 0 chr9 61072453 61072500 -63003672 + B4 SINE B4 40 87 -205 1 1050 215 211 0 0 chr9 61072581 61072619 -63003553 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1050 411 56 0 0 chr9 61072663 61072717 -63003455 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1050 353 22 22 0 chr9 61072745 61072791 -63003381 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1050 952 174 6 28 chr9 61073472 61073649 -63002523 + B2_Mm2 SINE B2 4 176 -19 1 1050 504 0 0 0 chr9 61073650 61073706 -63002466 + (GAGAA)n Simple_repeat Simple_repeat 5 60 0 1 1050 225 314 324 6 chr9 61074275 61074445 -63001727 - MIR SINE MIR -11 251 28 1 1050 22 0 0 0 chr9 61074481 61074503 -63001669 + GC_rich Low_complexity Low_complexity 1 22 0 1 1050 300 340 85 0 chr9 61074570 61074723 -63001449 + MIRb SINE MIR 71 236 -32 1 1050 545 337 10 35 chr9 61075032 61075232 -63000940 + MER20 DNA MER1_type 1 195 -24 1 1050 292 263 79 0 chr9 61075210 61075286 -63000886 - B4 SINE B4 -210 82 1 1 1050 1145 211 118 21 chr9 61076377 61076759 -62999413 - MTD LTR MaLR 0 419 1 1 1050 399 160 0 0 chr9 61077351 61077426 -62998746 + T-rich Low_complexity Low_complexity 1 75 0 1 1050 1238 48 0 0 chr9 61077427 61077572 -62998600 - B1_Mus2 SINE Alu -1 146 2 1 1050 1122 211 25 60 chr9 61077616 61077898 -62998274 - B4A SINE B4 -1 291 20 1 1050 384 158 0 0 chr9 61078048 61078124 -62998048 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1050 504 48 0 0 chr9 61078461 61078524 -62997648 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1050 1049 330 35 65 chr9 61078686 61079227 -62996945 + MT2A LTR ERVL 1 525 -8 1 1051 294 268 160 19 chr9 61079572 61079677 -62996495 + PB1D10 SINE Alu 4 122 -5 1 1051 228 311 94 0 chr9 61080539 61080645 -62995527 + MIRm SINE MIR 22 137 -139 1 1051 405 250 31 10 chr9 61080731 61080828 -62995344 - ID_B1 SINE B4 -5 219 121 1 1051 229 179 26 0 chr9 61080882 61080921 -62995251 - B1F SINE Alu -106 43 4 1 1051 917 228 49 5 chr9 61081892 61082095 -62994077 + ID_B1 SINE B4 3 214 -10 1 1051 180 245 0 0 chr9 61082103 61082156 -62994016 + (CAGT)n Simple_repeat Simple_repeat 4 56 0 1 1051 363 78 0 0 chr9 61082651 61082702 -62993470 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1051 619 222 0 38 chr9 61082761 61082892 -62993280 - RSINE1 SINE B4 -37 128 3 1 1051 396 0 0 0 chr9 61083164 61083208 -62992964 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1051 1070 260 7 75 chr9 61083235 61083543 -62992629 - B4 SINE B4 -4 288 2 1 1051 672 263 38 0 chr9 61083943 61084152 -62992020 - L1MC LINE L1 -2370 5512 5296 1 1051 1000 246 60 49 chr9 61084297 61084562 -62991610 + B4A SINE B4 3 270 -22 1 1051 567 53 0 0 chr9 61084582 61084657 -62991515 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1051 324 0 0 0 chr9 61085950 61085986 -62990186 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 1 1051 266 171 14 0 chr9 61086719 61086789 -62989383 + (AATTG)n Simple_repeat Simple_repeat 3 73 0 1 1051 387 0 0 0 chr9 61087208 61087251 -62988921 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1051 354 358 90 101 chr9 61087492 61087859 -62988313 + L2b LINE L2 3013 3375 0 1 1051 501 250 48 107 chr9 61090362 61090568 -62985604 - B3A SINE B2 -3 195 2 1 1051 342 0 0 0 chr9 61090639 61090677 -62985495 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1051 328 238 0 0 chr9 61090679 61090742 -62985430 - B1F1 SINE Alu -86 63 1 1 1051 423 0 0 0 chr9 61090823 61090870 -62985302 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 1 1051 809 155 35 7 chr9 61090975 61091118 -62985054 + B1_Mus2 SINE Alu 1 147 0 1 1051 216 0 0 0 chr9 61091285 61091309 -62984863 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1051 303 233 46 11 chr9 61091454 61091541 -62984631 - MLT1K LTR MaLR -1 594 505 2 1051 628 191 6 6 chr9 61091573 61091747 -62984425 + CT-rich Low_complexity Low_complexity 3 176 0 2 1051 248 364 51 62 chr9 61091777 61092052 -62984120 - MLT1K LTR MaLR -164 431 160 2 1051 865 286 54 40 chr9 61092320 61092597 -62983575 + B4A SINE B4 5 285 -7 2 1051 948 155 0 0 chr9 61092652 61092794 -62983378 - B1_Mus1 SINE Alu -2 146 5 2 1051 582 15 0 0 chr9 61092808 61092875 -62983297 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1051 1157 317 68 4 chr9 61092985 61093438 -62982734 - Lx8 LINE L1 -550 6923 6442 2 1051 418 266 96 0 chr9 61093972 61094066 -62982106 + RSINE1 SINE B4 12 114 -51 2 1051 233 296 51 85 chr9 61094066 61094085 -62982087 + B2_Mm2 SINE B2 12 120 -75 2 1051 340 152 17 0 chr9 61094377 61094436 -62981736 + B3A SINE B2 1 60 -138 2 1051 494 219 19 28 chr9 61094446 61094554 -62981618 + ID_B1 SINE B4 103 209 -15 2 1051 440 350 8 0 chr9 61094552 61094669 -62981503 + MER2 DNA MER2_type 214 331 -14 2 1051 520 228 263 0 chr9 61095169 61095340 -62980832 - B3 SINE B2 0 216 1 2 1051 560 114 71 6 chr9 61095577 61095745 -62980427 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1051 357 198 49 12 chr9 61095767 61095848 -62980324 - B4A SINE B4 -2 290 207 2 1051 775 138 9 0 chr9 61095848 61095964 -62980208 + MTC LTR MaLR 1 117 -304 2 1051 837 48 0 0 chr9 61095973 61096076 -62980096 - B1_Mus2 SINE Alu -3 144 42 2 1051 331 182 89 25 chr9 61096013 61096092 -62980080 - RLTR25B LTR ERVK -519 509 426 2 1051 273 83 42 0 chr9 61096101 61096149 -62980023 - Lx9 LINE L1 0 7644 7595 2 1051 1957 104 5 181 chr9 61097250 61097649 -62978523 - ORR1A4 LTR MaLR 0 329 1 2 1051 461 236 37 28 chr9 61098927 61099036 -62977136 + PB1D10 SINE Alu 7 116 -1 2 1051 507 107 0 0 chr9 61099041 61099116 -62977056 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1051 33 66 0 0 chr9 61099949 61100010 -62976162 + AT_rich Low_complexity Low_complexity 1 61 0 2 1051 232 250 0 0 chr9 61100338 61100390 -62975782 + L2a LINE L2 3134 3185 -241 2 1051 402 294 42 49 chr9 61100719 61100862 -62975310 + MER20 DNA MER1_type 26 167 -52 2 1051 223 255 0 18 chr9 61101294 61101350 -62974822 + GA-rich Low_complexity Low_complexity 2 56 0 2 1051 395 231 105 53 chr9 61101374 61101464 -62974708 + MTEa LTR MaLR 3 101 -278 2 1051 1832 172 35 37 chr9 61101464 61101839 -62974333 - ORR1D1 LTR MaLR 0 374 1 2 1051 395 231 105 53 chr9 61101839 61101862 -62974310 + MTEa LTR MaLR 102 122 -257 2 1051 1107 83 0 11 chr9 61101898 61102504 -62973668 + (TC)n Simple_repeat Simple_repeat 1 599 0 2 1051 436 214 169 54 chr9 61102504 61102520 -62973652 + MTEa LTR MaLR 201 210 -169 2 1051 918 122 0 0 chr9 61102520 61102700 -62973472 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1051 436 214 169 54 chr9 61102700 61102831 -62973341 + MTEa LTR MaLR 211 365 -14 2 1051 191 307 67 38 chr9 61102965 61103070 -62973102 - L2c LINE L2 -26 3361 3254 2 1051 852 212 10 77 chr9 61103665 61103874 -62972298 + B3A SINE B2 1 195 -3 2 1051 1000 287 78 42 chr9 61103893 61104227 -62971945 - MTE2a LTR MaLR -32 347 2 2 1051 987 274 55 15 chr9 61104563 61104837 -62971335 + B4A SINE B4 8 292 0 2 1051 480 307 38 32 chr9 61104989 61105174 -62970998 + MIR SINE MIR 6 191 -71 2 1051 193 297 120 11 chr9 61105382 61105474 -62970698 + MIRc SINE MIR 6 107 -161 2 1051 336 301 11 0 chr9 61105481 61105574 -62970598 - MIR3 SINE MIR -23 185 92 2 1051 387 0 0 0 chr9 61105639 61105682 -62970490 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1051 414 196 0 0 chr9 61105682 61105774 -62970398 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1051 310 327 134 21 chr9 61106540 61106759 -62969413 + MIR SINE MIR 9 258 -10 2 1051 469 254 117 21 chr9 61106935 61107080 -62969092 - MER58A DNA MER1_type -36 188 30 2 1051 509 261 179 18 chr9 61108342 61108510 -62967662 + B4 SINE B4 10 204 -88 2 1051 721 157 0 23 chr9 61108512 61108642 -62967530 + B1_Mus2 SINE Alu 1 127 -20 2 1051 180 320 0 51 chr9 61108976 61109055 -62967117 - L3 LINE CR1 -3493 996 922 2 1051 263 312 169 28 chr9 61110493 61110671 -62965501 - MIRb SINE MIR -33 235 33 2 1051 895 278 67 97 chr9 61110817 61111116 -62965056 + B4 SINE B4 2 291 -1 2 1051 230 197 33 0 chr9 61111124 61111185 -62964987 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1051 320 233 78 104 chr9 61111557 61111672 -62964500 + MT2B LTR ERVL 153 264 -337 2 1051 823 123 61 8 chr9 61111577 61111708 -62964464 + B1_Mus2 SINE Alu 10 147 0 2 1051 273 287 53 82 chr9 61111672 61111728 -62964444 + B4A SINE B4 81 246 -46 2 1051 3716 144 16 25 chr9 61112444 61113120 -62963052 + RMER6A LTR ERVK 87 756 0 2 1051 1553 210 81 31 chr9 61113355 61113738 -62962434 + MTD LTR MaLR 18 419 0 2 1051 1365 152 4 0 chr9 61114039 61114270 -62961902 + RMER6A LTR ERVK 82 313 -443 2 1051 894 135 7 7 chr9 61116856 61117005 -62959167 + B1_Mur1 SINE Alu 1 149 0 2 1051 520 239 22 23 chr9 61117839 61118007 -62958165 + B3 SINE B2 18 194 -4 2 1051 748 277 24 0 chr9 61118296 61118502 -62957670 + ID_B1 SINE B4 2 212 -12 2 1051 252 0 0 0 chr9 61118514 61118542 -62957630 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2 1051 476 235 0 10 chr9 61118559 61118658 -62957514 + ID_B1 SINE B4 124 221 -3 2 1051 434 18 18 0 chr9 61119108 61119163 -62957009 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1051 246 346 65 0 chr9 61119234 61119341 -62956831 + MIRb SINE MIR 52 165 -103 2 1051 844 317 85 18 chr9 61119745 61120129 -62956043 - MLT2B1 LTR ERVL -101 419 7 2 1051 405 221 8 110 chr9 61120612 61120739 -62955433 - MTE2b LTR MaLR -11 368 255 2 1051 216 0 0 0 chr9 61120772 61120796 -62955376 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1051 822 273 18 39 chr9 61121158 61121387 -62954785 - MTE2b LTR MaLR -152 227 4 2 1051 543 280 89 61 chr9 61121481 61121694 -62954478 + MER2 DNA MER2_type 106 324 -21 2 1051 1414 212 155 58 chr9 61121697 61122078 -62954094 - MTD LTR MaLR 0 419 2 2 1051 342 0 0 0 chr9 61122310 61122348 -62953824 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2 1051 247 240 0 0 chr9 61122378 61122428 -62953744 - RSINE1 SINE B4 -35 130 81 2 1051 319 304 19 38 chr9 61122549 61122655 -62953517 + RSINE1 SINE B4 62 165 0 2 1051 230 121 0 0 chr9 61123452 61123485 -62952687 + (TGGG)n Simple_repeat Simple_repeat 4 36 0 2 1051 772 187 9 0 chr9 61123494 61123718 -62952454 + (TGGA)n Simple_repeat Simple_repeat 1 226 0 2 1051 277 208 0 19 chr9 61123719 61123773 -62952399 + (TGGG)n Simple_repeat Simple_repeat 3 55 0 2 1051 849 153 11 6 chr9 61123775 61123952 -62952220 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 2 1051 251 240 10 0 chr9 61123974 61124078 -62952094 + (TGGA)n Simple_repeat Simple_repeat 4 108 0 2 1051 1064 82 7 0 chr9 61124893 61125039 -62951133 + B1_Mus1 SINE Alu 2 148 0 2 1051 406 230 33 58 chr9 61125283 61125403 -62950769 - B1F SINE Alu -30 119 3 2 1051 297 0 0 0 chr9 61126119 61126152 -62950020 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1051 228 220 0 48 chr9 61127439 61127501 -62948671 - MIR3 SINE MIR -41 167 109 2 1051 378 0 0 0 chr9 61127565 61127607 -62948565 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1051 1256 254 45 12 chr9 61127625 61127956 -62948216 + MTE2b LTR MaLR 1 342 -37 2 1051 414 134 0 0 chr9 61127966 61128033 -62948139 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1051 1174 182 208 7 chr9 61128227 61128525 -62947647 + MTD LTR MaLR 62 419 0 2 1051 246 62 0 0 chr9 61128550 61128582 -62947590 + (CAT)n Simple_repeat Simple_repeat 3 34 0 2 1051 306 0 0 0 chr9 61129414 61129448 -62946724 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1051 459 112 31 0 chr9 61129448 61129546 -62946626 + (TG)n Simple_repeat Simple_repeat 1 101 0 2 1051 1020 67 30 0 chr9 61133280 61133414 -62942758 - B1_Mus2 SINE Alu -9 138 1 2 1051 1010 261 59 34 chr9 61133998 61134355 -62941817 + ORR1D2 LTR MaLR 1 366 -4 2 1051 278 231 15 30 chr9 61134361 61134428 -62941744 - RSINE1 SINE B4 -42 123 58 2 1051 207 179 0 0 chr9 61134428 61134467 -62941705 + C-rich Low_complexity Low_complexity 6 44 0 2 1051 240 35 0 0 chr9 61134469 61134498 -62941674 + (CAG)n Simple_repeat Simple_repeat 1 29 0 2 1051 653 179 41 2 chr9 61134555 61134685 -62941487 - B1_Mus2 SINE Alu -1 146 14 2 1051 1121 194 5 0 chr9 61134749 61134960 -62941212 + B3 SINE B2 1 212 -4 2 1051 385 253 0 31 chr9 61135316 61135395 -62940777 + B3 SINE B2 122 199 -17 2 1051 1204 21 7 0 chr9 61135395 61135540 -62940632 + B1_Mus1 SINE Alu 2 147 -1 2 1051 385 253 0 31 chr9 61135540 61135558 -62940614 + B3 SINE B2 200 216 0 2 1051 2300 233 119 51 chr9 61135578 61136441 -62939731 + L1M2 LINE L1 4383 5318 -825 2 1051 657 186 253 6 chr9 61136441 61136603 -62939569 + B3 SINE B2 1 202 -14 2 1051 2300 233 119 51 chr9 61136603 61136680 -62939492 + L1M2 LINE L1 5319 5387 -756 2 1051 410 227 126 9 chr9 61136700 61136811 -62939361 + RSINE1 SINE B4 9 132 -33 2 1051 346 318 86 1 chr9 61136917 61137114 -62939058 + L1M2 LINE L1 5568 5778 -522 2 1051 633 238 85 80 chr9 61137169 61137393 -62938779 + B4 SINE B4 67 291 -1 2 1051 216 158 0 0 chr9 61137427 61137465 -62938707 + GA-rich Low_complexity Low_complexity 6 43 0 2 1051 688 238 0 13 chr9 61138606 61138759 -62937413 + RSINE1 SINE B4 15 165 0 2 1051 312 91 0 0 chr9 61138764 61138808 -62937364 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 1051 872 314 70 37 chr9 61138992 61139451 -62936721 + MLT1D LTR MaLR 25 498 -7 2 1051 342 45 0 0 chr9 61139788 61139832 -62936340 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1051 450 246 135 0 chr9 61139871 61139997 -62936175 - B4 SINE B4 -114 178 36 3 1051 345 257 29 38 chr9 61140212 61140317 -62935855 + MLT1A1 LTR MaLR 305 408 0 3 1051 835 159 14 0 chr9 61140579 61140724 -62935448 + B1_Mus2 SINE Alu 1 147 0 3 1051 23 54 0 0 chr9 61140733 61140770 -62935402 + AT_rich Low_complexity Low_complexity 1 37 0 3 1051 817 230 15 46 chr9 61140864 61141060 -62935112 + ID_B1 SINE B4 4 193 -31 3 1051 710 270 138 20 chr9 61142019 61142272 -62933900 - B4A SINE B4 0 292 10 3 1051 1020 244 4 49 chr9 61143795 61144041 -62932131 - MTD LTR MaLR -184 235 1 3 1051 180 0 0 0 chr9 61145991 61146011 -62930161 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1051 667 221 0 60 chr9 61146043 61146192 -62929980 - RSINE1 SINE B4 -20 145 6 3 1051 191 367 25 76 chr9 61146415 61146533 -62929639 - MIR SINE MIR -67 141 30 3 1051 877 119 0 65 chr9 61147087 61147240 -62928932 + URR1B DNA MER1_type 83 225 0 3 1051 245 280 102 9 chr9 61147439 61147547 -62928625 + MIRc SINE MIR 2 119 -149 3 1051 418 337 35 47 chr9 61147583 61147754 -62928418 + B4 SINE B4 55 223 -69 3 1051 678 200 44 7 chr9 61147621 61147757 -62928415 + B1_Mur1 SINE Alu 9 149 0 3 1051 270 0 0 0 chr9 61148006 61148036 -62928136 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1051 519 78 0 0 chr9 61148036 61148113 -62928059 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1051 236 241 59 17 chr9 61148123 61148241 -62927931 + (TG)n Simple_repeat Simple_repeat 2 124 0 3 1051 186 227 0 0 chr9 61148419 61148463 -62927709 + (TCCGG)n Simple_repeat Simple_repeat 4 47 0 3 1051 191 294 82 52 chr9 61149347 61149444 -62926728 + MIRc SINE MIR 44 143 -125 3 1051 270 297 67 29 chr9 61149608 61149712 -62926460 + B4A SINE B4 109 216 -76 3 1051 450 0 0 0 chr9 61149802 61149852 -62926320 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1051 234 0 0 0 chr9 61149852 61149877 -62926295 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1051 235 118 78 0 chr9 61150240 61150291 -62925881 + 4.5SRNA scRNA scRNA 32 86 -8 3 1051 565 137 49 0 chr9 61150247 61150349 -62925823 + B1_Mus2 SINE Alu 41 147 0 3 1051 838 182 17 0 chr9 61150349 61150586 -62925586 + GA-rich Low_complexity Low_complexity 1 241 0 3 1051 182 321 0 0 chr9 61151026 61151079 -62925093 + MIRc SINE MIR 73 125 -143 3 1051 294 241 25 0 chr9 61151205 61151284 -62924888 - MIR SINE MIR -139 123 43 3 1051 216 0 0 0 chr9 61151320 61151344 -62924828 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1051 213 39 0 0 chr9 61151484 61151510 -62924662 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1051 507 263 123 7 chr9 61151526 61151664 -62924508 - RSINE1 SINE B4 0 165 12 3 1051 411 296 0 17 chr9 61151801 61151918 -62924254 - PB1D10 SINE Alu -2 115 1 3 1051 766 274 122 11 chr9 61152089 61152351 -62923821 + B4A SINE B4 2 292 0 3 1051 1135 82 51 39 chr9 61152425 61152603 -62923569 - B2_Mm2 SINE B2 -14 181 2 3 1051 21 0 0 0 chr9 61152635 61152656 -62923516 + AT_rich Low_complexity Low_complexity 1 21 0 3 1051 2020 208 27 168 chr9 61152917 61153589 -62922583 + RMER19C LTR ERVK 1 577 -34 3 1051 341 240 59 20 chr9 61153827 61153929 -62922243 + PB1D7 SINE Alu 3 108 -12 3 1051 353 316 35 48 chr9 61154268 61154497 -62921675 + L1M5 LINE L1 4866 5091 -1055 3 1051 653 179 185 0 chr9 61154801 61154952 -62921220 - B3A SINE B2 -19 179 1 3 1051 510 263 18 82 chr9 61155091 61155261 -62920911 + B4A SINE B4 2 160 -132 3 1051 1081 126 65 105 chr9 61155265 61155513 -62920659 - ORR1C1 LTR MaLR -140 238 1 3 1051 275 65 22 0 chr9 61155594 61155640 -62920532 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1051 2468 65 6 6 chr9 61155778 61156105 -62920067 + ORR1A2 LTR MaLR 1 327 0 3 1051 302 315 26 26 chr9 61156162 61156276 -62919896 - PB1D10 SINE Alu -3 114 1 3 1051 952 181 80 0 chr9 61156301 61156489 -62919683 + B3 SINE B2 3 205 -11 3 1051 434 250 90 69 chr9 61156712 61156901 -62919271 - B3A SINE B2 -1 194 2 3 1051 267 287 99 0 chr9 61157190 61157291 -62918881 + B4A SINE B4 170 280 -12 3 1051 657 227 26 13 chr9 61158170 61158249 -62917923 + ID SINE ID 2 82 -142 3 1051 221 356 24 73 chr9 61158249 61158373 -62917799 + B1_Mus2 SINE Alu 1 118 -29 3 1051 287 268 20 10 chr9 61158579 61158677 -62917495 - MIRc SINE MIR -106 162 64 3 1051 266 318 38 38 chr9 61158826 61158986 -62917186 + MER102a DNA MER1_type 145 304 -26 3 1051 405 0 0 0 chr9 61159275 61159320 -62916852 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1051 459 52 0 0 chr9 61159322 61159380 -62916792 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1051 243 0 0 0 chr9 61160221 61160248 -62915924 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1051 276 53 0 0 chr9 61160248 61160286 -62915886 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1051 395 212 26 82 chr9 61160301 61160438 -62915734 - B4A SINE B4 -57 235 105 3 1051 880 264 51 55 chr9 61161222 61161515 -62914657 - B4A SINE B4 0 292 1 3 1051 281 255 101 28 chr9 61161937 61162089 -62914083 + MIR3 SINE MIR 19 176 -32 3 1051 240 236 0 0 chr9 61162954 61163009 -62913163 - MIR SINE MIR -76 132 78 3 1051 258 237 17 0 chr9 61163903 61163962 -62912210 + MER102b DNA MER1_type 87 146 -195 3 1051 378 0 0 0 chr9 61164629 61164671 -62911501 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1051 331 317 16 24 chr9 61164675 61164801 -62911371 - B4A SINE B4 -27 265 141 3 1051 202 305 0 33 chr9 61166304 61166365 -62909807 - MIRb SINE MIR -93 175 117 3 1051 539 288 138 28 chr9 61166667 61166956 -62909216 - MTE2a LTR MaLR -3 376 56 3 1051 485 174 148 0 chr9 61166947 61167062 -62909110 + B1_Mur3 SINE Alu 16 147 -2 3 1051 213 94 0 0 chr9 61167062 61167094 -62909078 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 3 1051 370 194 28 0 chr9 61167107 61167179 -62908993 - MTE2a LTR MaLR -305 74 1 3 1051 458 331 7 0 chr9 61167313 61167455 -62908717 - MIRb SINE MIR -123 145 3 3 1051 220 154 39 0 chr9 61168788 61168840 -62907332 + GA-rich Low_complexity Low_complexity 4 57 0 3 1051 1244 34 11 28 chr9 61168841 61169021 -62907151 + (GAGAA)n Simple_repeat Simple_repeat 3 179 0 3 1051 216 368 113 9 chr9 61169104 61169219 -62906953 + B1F SINE Alu 1 127 -22 3 1051 249 57 0 0 chr9 61169222 61169257 -62906915 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1051 466 314 21 31 chr9 61170107 61170298 -62905874 - MIRb SINE MIR -39 229 41 3 1051 240 196 0 19 chr9 61173077 61173129 -62903043 - MER90a LTR ERV1 -14 600 550 3 1051 495 306 160 14 chr9 61173273 61173555 -62902617 - MER90a LTR ERV1 -220 394 72 3 1051 328 288 96 19 chr9 61174442 61174598 -62901574 + MIRb SINE MIR 22 189 -79 3 1051 379 341 81 17 chr9 61174742 61174915 -62901257 + MIRm SINE MIR 3 186 -90 3 1051 1099 232 10 0 chr9 61175165 61175372 -62900800 + ID_B1 SINE B4 1 209 -15 3 1051 396 0 0 0 chr9 61175373 61175417 -62900755 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 3 1051 288 290 50 64 chr9 61175426 61175566 -62900606 + B1F1 SINE Alu 5 142 -7 3 1051 395 232 0 12 chr9 61176412 61176495 -62899677 + PB1D10 SINE Alu 1 82 -35 3 1051 409 361 6 92 chr9 61176495 61176669 -62899503 + ID_B1 SINE B4 18 176 -48 3 1051 306 268 0 0 chr9 61176609 61176680 -62899492 + PB1D10 SINE Alu 36 106 -11 3 1051 221 183 32 32 chr9 61176694 61176756 -62899416 + GA-rich Low_complexity Low_complexity 4 65 0 3 1051 1407 69 16 21 chr9 61176843 61177036 -62899136 + B2_Mm2 SINE B2 2 193 -2 3 1051 449 317 107 0 chr9 61177868 61178111 -62898061 + HAL1 LINE L1 1493 1761 -746 3 1051 827 167 7 14 chr9 61179340 61179486 -62896686 + B1_Mus1 SINE Alu 1 145 -3 3 1051 1173 86 0 0 chr9 61179499 61179662 -62896510 + (GAGAA)n Simple_repeat Simple_repeat 5 167 0 3 1051 347 191 14 56 chr9 61179678 61179750 -62896422 + RSINE1 SINE B4 16 84 -81 3 1051 405 0 0 0 chr9 61179796 61179841 -62896331 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1051 1018 245 143 32 chr9 61181650 61182023 -62894149 - MTD LTR MaLR -14 405 5 3 1051 195 139 0 0 chr9 61182268 61182304 -62893868 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1051 240 59 0 0 chr9 61182304 61182338 -62893834 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1051 346 338 33 75 chr9 61182348 61182562 -62893610 - L1MC LINE L1 -2169 5713 5509 3 1051 948 249 10 5 chr9 61183397 61183603 -62892569 - ID_B1 SINE B4 -16 208 2 3 1051 766 226 117 10 chr9 61184593 61184790 -62891382 + ID_B1 SINE B4 1 218 -6 3 1051 232 296 62 0 chr9 61185742 61185823 -62890349 + MIR3 SINE MIR 91 176 -32 3 1051 240 405 0 0 chr9 61185836 61185925 -62890247 - MIRc SINE MIR -43 225 137 3 1051 187 326 0 0 chr9 61186600 61186646 -62889526 + L2c LINE L2 3291 3336 -51 3 1051 277 315 26 51 chr9 61186705 61186822 -62889350 + RMER30 DNA MER1_type 1 114 -88 3 1051 264 324 181 35 chr9 61186741 61186885 -62889287 - Charlie12 DNA MER1_type -2700 173 9 3 1051 224 309 0 0 chr9 61186900 61186955 -62889217 + MIRc SINE MIR 104 158 -110 3 1051 2129 147 118 16 chr9 61188137 61188517 -62887655 - MTD LTR MaLR 0 419 1 3 1051 481 318 78 44 chr9 61188596 61188665 -62887507 + B4 SINE B4 8 81 -211 3 1051 333 0 0 0 chr9 61188665 61188702 -62887470 + (TAA)n Simple_repeat Simple_repeat 3 39 0 4 1051 481 318 78 44 chr9 61188702 61188836 -62887336 + B4 SINE B4 82 217 -75 3 1051 641 276 66 29 chr9 61188854 61189126 -62887046 + B4A SINE B4 1 282 -10 4 1051 532 309 80 50 chr9 61189579 61189780 -62886392 - B4A SINE B4 -2 290 84 4 1051 282 245 0 130 chr9 61189797 61189923 -62886249 - B3A SINE B2 -45 153 42 4 1051 370 286 11 0 chr9 61189942 61190033 -62886139 - B4 SINE B4 -200 92 1 4 1051 481 341 12 0 chr9 61190060 61190227 -62885945 - MER5B DNA MER1_type -6 172 4 4 1051 568 271 7 14 chr9 61190344 61190486 -62885686 + Tigger15a DNA TcMar 573 713 -2 4 1051 426 69 0 0 chr9 61190533 61190591 -62885581 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1051 763 257 50 37 chr9 61190913 61191131 -62885041 + ID_B1 SINE B4 1 221 -3 4 1051 242 303 95 32 chr9 61191370 61191496 -62884676 + L2c LINE L2 3249 3382 -5 4 1051 369 0 0 0 chr9 61191635 61191676 -62884496 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1051 253 306 35 0 chr9 61191884 61191969 -62884203 - B4A SINE B4 -2 290 203 4 1051 223 194 27 14 chr9 61193086 61193159 -62883013 + G-rich Low_complexity Low_complexity 4 77 0 4 1051 259 288 0 0 chr9 61193237 61193296 -62882876 + PB1D7 SINE Alu 1 59 -61 4 1051 220 345 68 17 chr9 61193296 61193355 -62882817 + ID_B1 SINE B4 82 205 -19 4 1051 711 305 50 21 chr9 61194481 61194722 -62881450 + B4A SINE B4 5 252 -40 4 1051 450 0 0 0 chr9 61194749 61194799 -62881373 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1051 288 0 0 0 chr9 61194802 61194834 -62881338 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1051 622 219 0 31 chr9 61195532 61195659 -62880513 + RSINE1 SINE B4 2 124 -41 4 1051 387 0 0 0 chr9 61195659 61195702 -62880470 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1051 948 265 65 108 chr9 61197080 61197452 -62878720 - MTE2b LTR MaLR -19 360 5 4 1051 290 331 126 0 chr9 61197659 61197786 -62878386 - MLT1J2 LTR MaLR -305 143 1 4 1051 463 276 0 30 chr9 61197813 61197944 -62878228 + RSINE1 SINE B4 6 132 -33 4 1051 270 0 0 0 chr9 61197951 61197981 -62878191 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1051 559 274 137 34 chr9 61198521 61198755 -62877417 + B4A SINE B4 8 265 -27 4 1051 366 273 52 29 chr9 61199410 61199546 -62876626 - B1F1 SINE Alu -2 147 9 4 1051 497 246 18 0 chr9 61199444 61199558 -62876614 - ID_B1 SINE B4 -31 193 78 4 1051 1053 216 14 14 chr9 61199620 61199836 -62876336 + B3 SINE B2 1 216 0 4 1051 600 296 20 36 chr9 61200583 61200779 -62875393 - RMER30 DNA MER1_type -2 200 8 4 1051 469 198 0 16 chr9 61201574 61201702 -62874470 + (CA)n Simple_repeat Simple_repeat 2 127 0 4 1051 942 219 83 0 chr9 61201935 61202140 -62874032 + ID_B1 SINE B4 1 222 -2 4 1051 339 25 0 0 chr9 61202496 61202536 -62873636 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1051 270 231 0 0 chr9 61202567 61202632 -62873540 - B4A SINE B4 -13 279 215 4 1051 513 131 0 0 chr9 61202650 61202734 -62873438 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 4 1051 968 69 15 22 chr9 61202749 61202883 -62873289 - B1_Mus1 SINE Alu -14 134 2 4 1051 1575 202 66 28 chr9 61202926 61203318 -62872854 - MTD LTR MaLR 0 419 13 4 1051 1331 86 11 17 chr9 61203319 61203497 -62872675 + B2_Mm2 SINE B2 1 177 -18 4 1051 279 0 0 0 chr9 61203506 61203537 -62872635 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1051 317 312 20 92 chr9 61203569 61203659 -62872513 - B4A SINE B4 -105 187 103 4 1051 713 58 298 0 chr9 61203659 61203763 -62872409 + B1_Mm SINE Alu 5 139 -8 4 1051 297 0 0 0 chr9 61203763 61203796 -62872376 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 4 1051 317 312 20 92 chr9 61203796 61203856 -62872316 - B4A SINE B4 -190 102 48 4 1051 880 273 104 90 chr9 61204331 61204697 -62871475 - MTE2b LTR MaLR 0 379 9 4 1051 211 89 44 0 chr9 61204812 61204846 -62871326 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 4 1051 1095 90 14 0 chr9 61204846 61204991 -62871181 - B1_Mus2 SINE Alu 0 147 1 4 1051 211 89 44 0 chr9 61204991 61205001 -62871171 + (TTTTTG)n Simple_repeat Simple_repeat 3 12 0 4 1051 319 289 60 26 chr9 61205002 61205119 -62871053 - ID_B1 SINE B4 0 224 104 4 1051 318 217 231 19 chr9 61205474 61205582 -62870590 + RSINE1 SINE B4 11 141 -24 4 1051 910 229 45 5 chr9 61205619 61205821 -62870351 - B3 SINE B2 -6 210 1 4 1051 817 273 101 125 chr9 61205821 61206494 -62869678 - L1MC1 LINE L1 -31 6302 5646 4 1051 295 250 24 24 chr9 61206515 61206597 -62869575 - ID4_ SINE ID 0 83 2 4 1051 195 279 151 41 chr9 61206887 61207059 -62869113 + MIR3 SINE MIR 11 201 -7 4 1051 360 0 0 0 chr9 61207386 61207426 -62868746 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1051 686 298 83 21 chr9 61207440 61207680 -62868492 - B4 SINE B4 -36 256 2 4 1051 241 315 22 52 chr9 61208106 61208240 -62867932 - L2 LINE L2 -469 2950 2821 4 1051 762 293 10 5 chr9 61208409 61208618 -62867554 - MTE2b LTR MaLR -162 217 8 4 1051 481 274 31 77 chr9 61209612 61209806 -62866366 - MER53 DNA hAT -1 192 8 4 1051 243 0 0 0 chr9 61210390 61210417 -62865755 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1052 1615 297 62 12 chr9 61210716 61211374 -62864798 - L1MB2 LINE L1 0 6171 5481 4 1052 195 100 0 0 chr9 61211384 61211414 -62864758 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 4 1052 368 304 35 76 chr9 61211445 61211616 -62864556 - RSINE1 SINE B4 0 165 2 4 1052 619 244 22 7 chr9 61211657 61211793 -62864379 - B1_Mur1 SINE Alu -11 138 1 4 1052 226 288 45 0 chr9 61212208 61212274 -62863898 + PB1D10 SINE Alu 36 104 -13 4 1052 348 24 0 0 chr9 61212274 61212315 -62863857 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 4 1052 770 235 23 26 chr9 61212318 61212537 -62863635 + B3A SINE B2 1 216 0 4 1052 453 251 35 9 chr9 61213099 61213235 -62862937 + MTE2b LTR MaLR 224 374 -5 4 1052 552 146 0 0 chr9 61213345 61213434 -62862738 + RSINE1 SINE B4 48 136 -29 4 1052 186 43 0 0 chr9 61213465 61213488 -62862684 + (TTA)n Simple_repeat Simple_repeat 3 25 0 4 1052 500 238 9 0 chr9 61213496 61213601 -62862571 - MER20 DNA MER1_type -110 109 4 4 1052 203 255 20 0 chr9 61214572 61214623 -62861549 - MIRc SINE MIR -106 162 111 4 1052 379 277 51 62 chr9 61215419 61215596 -62860576 - MIRb SINE MIR -8 260 86 4 1052 414 307 81 49 chr9 61215735 61215958 -62860214 + MIR SINE MIR 28 257 -5 4 1052 255 61 0 0 chr9 61216997 61217030 -62859142 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 4 1052 252 214 0 0 chr9 61218016 61218072 -62858100 + T-rich Low_complexity Low_complexity 1 56 0 4 1052 26 30 0 0 chr9 61218867 61218900 -62857272 + GC_rich Low_complexity Low_complexity 1 33 0 4 1052 208 182 23 0 chr9 61220277 61220321 -62855851 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1052 199 54 26 26 chr9 61222402 61222440 -62853732 + (CAGGG)n Simple_repeat Simple_repeat 5 42 0 4 1052 222 118 0 0 chr9 61223291 61223325 -62852847 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1052 30 0 0 0 chr9 61223393 61223423 -62852749 + AT_rich Low_complexity Low_complexity 1 30 0 4 1052 183 42 0 0 chr9 61223785 61223809 -62852363 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1052 290 115 77 0 chr9 61223985 61224037 -62852135 - MIR SINE MIR -63 145 90 4 1052 411 21 0 0 chr9 61225971 61226019 -62850153 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1052 219 321 50 59 chr9 61226698 61226817 -62849355 - MIR3 SINE MIR -9 199 82 4 1052 243 0 0 0 chr9 61227144 61227171 -62849001 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1052 207 342 135 73 chr9 61228286 61228545 -62847627 - L2b LINE L2 -4 3371 3097 4 1052 198 71 0 0 chr9 61229283 61229311 -62846861 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 4 1052 333 0 0 0 chr9 61230057 61230094 -62846078 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1052 214 224 0 33 chr9 61233146 61233206 -62842966 + G-rich Low_complexity Low_complexity 2 59 0 4 1052 271 233 17 0 chr9 61235093 61235153 -62841019 - MTE2b LTR MaLR 0 379 319 4 1052 803 234 97 47 chr9 61235153 61235431 -62840741 + B4A SINE B4 1 292 0 4 1052 319 307 33 85 chr9 61235495 61235648 -62840524 - MTE2b LTR MaLR -198 181 37 4 1052 969 168 114 38 chr9 61237425 61237557 -62838615 - URR1A DNA MER1_type 0 226 94 4 1052 726 108 0 98 chr9 61237557 61237690 -62838482 + PB1D9 SINE Alu 1 120 0 4 1052 969 168 114 38 chr9 61237690 61237767 -62838405 - URR1A DNA MER1_type -133 93 1 4 1052 1132 290 14 3 chr9 61238754 61239041 -62837131 + B4A SINE B4 1 290 -2 4 1052 219 32 0 0 chr9 61240448 61240479 -62835693 + B3A SINE B2 1 31 -167 4 1052 387 0 0 0 chr9 61240858 61240901 -62835271 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1052 396 0 0 0 chr9 61240901 61240944 -62835228 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1052 326 194 9 69 chr9 61241769 61241865 -62834307 - L1MC1 LINE L1 -1 6343 6246 4 1052 402 367 6 37 chr9 61243478 61243642 -62832530 - RSINE1 SINE B4 -6 159 1 4 1052 461 299 88 5 chr9 61243772 61243888 -62832284 - MER20 DNA MER1_type -11 208 82 4 1052 285 29 0 0 chr9 61243888 61243922 -62832250 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1052 461 299 88 5 chr9 61243922 61243997 -62832175 - MER20 DNA MER1_type -138 81 2 4 1052 364 324 53 43 chr9 61246937 61247124 -62829048 - MIR SINE MIR -56 206 18 4 1052 21 36 0 0 chr9 61247684 61247712 -62828460 + AT_rich Low_complexity Low_complexity 1 28 0 4 1052 280 0 24 24 chr9 61249874 61249915 -62826257 + (GGCTG)n Simple_repeat Simple_repeat 5 45 0 4 1052 921 254 14 5 chr9 61250250 61250460 -62825712 + ID_B1 SINE B4 4 215 -9 5 1052 23 0 0 0 chr9 61250922 61250945 -62825227 + AT_rich Low_complexity Low_complexity 1 23 0 5 1052 216 208 38 0 chr9 61252468 61252521 -62823651 + (CCCCAA)n Simple_repeat Simple_repeat 2 56 0 5 1052 456 281 135 41 chr9 61254038 61254333 -62821839 - ORR1E LTR MaLR -9 370 8 5 1052 2384 131 40 5 chr9 61258057 61258456 -62817716 - MTC LTR MaLR -8 413 1 5 1052 192 291 139 0 chr9 61260406 61260485 -62815687 + MIR SINE MIR 60 149 -113 5 1052 324 0 0 0 chr9 61263950 61263986 -62812186 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1052 251 54 27 0 chr9 61265045 61265082 -62811090 + (TTTTC)n Simple_repeat Simple_repeat 4 41 0 5 1052 195 42 0 0 chr9 61265399 61265423 -62810749 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 5 1052 25 31 0 0 chr9 61265605 61265637 -62810535 + AT_rich Low_complexity Low_complexity 1 32 0 5 1052 260 281 31 0 chr9 61266418 61266482 -62809690 + C-rich Low_complexity Low_complexity 2 67 0 5 1052 457 258 0 0 chr9 61267577 61267670 -62808502 + B1_Mus2 SINE Alu 4 96 -51 5 1052 317 284 0 113 chr9 61267670 61267687 -62808485 + MT2B LTR ERVL 168 264 -337 5 1052 536 211 0 0 chr9 61267713 61267808 -62808364 + B1F SINE Alu 44 138 -11 5 1052 28 29 0 0 chr9 61267898 61267933 -62808239 + AT_rich Low_complexity Low_complexity 1 35 0 5 1052 546 16 0 0 chr9 61268228 61268291 -62807881 + (TCCA)n Simple_repeat Simple_repeat 1 63 0 5 1052 243 297 68 30 chr9 61268440 61268572 -62807600 - L2b LINE L2 -202 3173 3037 5 1052 311 234 19 13 chr9 61268995 61269151 -62807021 + (TGGA)n Simple_repeat Simple_repeat 3 159 0 5 1052 210 262 16 0 chr9 61269157 61269218 -62806954 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 5 1052 624 304 42 24 chr9 61269830 61270042 -62806130 + B4A SINE B4 69 284 -8 5 1052 321 26 0 0 chr9 61270297 61270335 -62805837 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 1052 1087 213 24 9 chr9 61270607 61270820 -62805352 - B3 SINE B2 0 216 1 5 1052 24 32 0 0 chr9 61270939 61270970 -62805202 + AT_rich Low_complexity Low_complexity 1 31 0 5 1052 244 280 135 17 chr9 61271051 61271229 -62804943 + L1MD LINE L1 4133 4331 -1815 5 1052 382 326 154 22 chr9 61271238 61271549 -62804623 + L1M5 LINE L1 4342 4693 -1453 5 1052 190 51 24 49 chr9 61272002 61272019 -62804153 + (CAA)n Simple_repeat Simple_repeat 1 17 0 5 1052 420 37 0 0 chr9 61272019 61272073 -62804099 + (CCA)n Simple_repeat Simple_repeat 1 54 0 5 1052 190 51 24 49 chr9 61272073 61272096 -62804076 + (CAA)n Simple_repeat Simple_repeat 3 25 0 5 1052 1325 21 28 3 chr9 61272538 61272832 -62803340 + (TAGA)n Simple_repeat Simple_repeat 1 301 0 5 1052 361 346 92 15 chr9 61273073 61273346 -62802826 + L1M5 LINE L1 5394 5687 -553 5 1052 1093 116 0 0 chr9 61273533 61273680 -62802492 + B1_Mus1 SINE Alu 2 148 0 5 1052 459 12 12 59 chr9 61273684 61273769 -62802403 + (GAGAA)n Simple_repeat Simple_repeat 4 84 0 5 1052 202 162 86 12 chr9 61273833 61273914 -62802258 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 5 1052 441 0 0 0 chr9 61274133 61274182 -62801990 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1052 190 175 121 17 chr9 61274386 61274444 -62801728 + MIR SINE MIR 61 124 -84 5 1052 564 297 40 79 chr9 61274834 61275212 -62800960 + ORR1E LTR MaLR 1 371 -3 5 1052 306 0 0 0 chr9 61275697 61275731 -62800441 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1052 213 39 0 0 chr9 61276027 61276053 -62800119 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 5 1052 182 217 79 48 chr9 61276282 61276345 -62799827 + L3 LINE CR1 1350 1414 -3075 5 1052 233 263 57 48 chr9 61276948 61277072 -62799100 - L1MC4 LINE L1 -844 7117 6993 5 1052 252 298 218 51 chr9 61277151 61277367 -62798805 + B4 SINE B4 2 253 -39 5 1052 284 348 20 34 chr9 61277591 61277737 -62798435 - L1MC4 LINE L1 -1186 6856 6713 5 1052 245 295 6 0 chr9 61277775 61277941 -62798231 + (TG)n Simple_repeat Simple_repeat 2 168 0 5 1052 432 0 0 0 chr9 61278208 61278256 -62797916 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1052 261 0 0 0 chr9 61278256 61278284 -62797888 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1052 1558 228 59 8 chr9 61279183 61279537 -62796635 + MTE2b LTR MaLR 3 374 -5 5 1052 266 197 36 12 chr9 61279591 61279651 -62796521 - MIR3 SINE MIR -104 172 110 5 1052 390 245 10 10 chr9 61280230 61280329 -62795843 + ID_B1 SINE B4 120 218 -6 5 1052 196 367 33 0 chr9 61280481 61280571 -62795601 - L2b LINE L2 -183 3192 3100 5 1052 754 283 23 9 chr9 61280877 61281078 -62795094 + ID_B1 SINE B4 8 212 -12 5 1052 180 0 0 0 chr9 61281078 61281098 -62795074 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 5 1052 754 283 23 9 chr9 61281098 61281110 -62795062 + ID_B1 SINE B4 213 224 0 5 1052 23 33 0 0 chr9 61282507 61282537 -62793635 + AT_rich Low_complexity Low_complexity 1 30 0 5 1052 652 247 148 6 chr9 61282537 61282720 -62793452 - ID_B1 SINE B4 -13 211 3 5 1052 870 38 0 0 chr9 61282730 61282836 -62793336 + (CTTTG)n Simple_repeat Simple_repeat 2 107 0 5 1052 672 126 143 0 chr9 61282837 61282956 -62793216 - B1_Mus1 SINE Alu -12 136 1 5 1052 1667 197 19 115 chr9 61283373 61283792 -62792380 + MTE2a LTR MaLR 1 379 0 5 1052 182 179 136 51 chr9 61283819 61283878 -62792294 + MIR3 SINE MIR 131 194 -14 5 1052 294 202 75 12 chr9 61284262 61284342 -62791830 - ID_B1 SINE B4 -2 222 138 5 1052 664 242 69 25 chr9 61286220 61286423 -62789749 + ID_B1 SINE B4 1 212 -12 5 1052 1507 175 127 15 chr9 61288115 61288437 -62787735 - MTD LTR MaLR -40 379 21 5 1052 195 69 0 0 chr9 61288437 61288466 -62787706 + (CAA)n Simple_repeat Simple_repeat 3 31 0 5 1052 192 255 0 0 chr9 61290089 61290147 -62786025 + MIRc SINE MIR 93 147 -61 5 1052 227 250 0 0 chr9 61290198 61290246 -62785926 + ID4 SINE ID 2 49 -34 5 1052 298 147 0 29 chr9 61290262 61290332 -62785840 + GA-rich Low_complexity Low_complexity 3 70 0 5 1052 485 302 0 0 chr9 61290348 61290454 -62785718 + ID_B1 SINE B4 85 190 -34 5 1052 264 286 0 0 chr9 61290460 61290530 -62785642 + GA-rich Low_complexity Low_complexity 4 73 0 5 1052 317 268 80 80 chr9 61290557 61290695 -62785477 + ID_B1 SINE B4 81 218 -6 5 1052 215 190 17 0 chr9 61290699 61290757 -62785415 + GA-rich Low_complexity Low_complexity 1 59 0 5 1052 486 232 109 23 chr9 61292119 61292247 -62783925 + RSINE1 SINE B4 3 141 -24 5 1052 185 94 0 30 chr9 61292260 61292293 -62783879 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 5 1052 241 329 91 0 chr9 61292405 61292548 -62783624 + MER5B DNA MER1_type 9 164 -14 5 1052 210 37 0 0 chr9 61292609 61292636 -62783536 + (CAG)n Simple_repeat Simple_repeat 1 27 0 5 1052 198 91 0 0 chr9 61293260 61293293 -62782879 + (C)n Simple_repeat Simple_repeat 1 33 0 5 1052 292 133 0 32 chr9 61294137 61294199 -62781973 + GA-rich Low_complexity Low_complexity 2 61 0 5 1052 1331 197 71 14 chr9 61296207 61296490 -62779682 - MTD LTR MaLR -90 329 31 5 1052 456 19 0 0 chr9 61297584 61297637 -62778535 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1052 1237 52 122 0 chr9 61298017 61298189 -62777983 + B2_Mm1a SINE B2 1 193 0 5 1052 225 270 52 39 chr9 61298239 61298316 -62777856 + ID4_ SINE ID 4 81 -2 5 1052 4941 153 50 7 chr9 61298363 61299244 -62776928 - Lx5 LINE L1 -9 7041 6123 5 1052 186 338 29 0 chr9 61299359 61299427 -62776745 - MIR SINE MIR -8 254 185 5 1052 781 256 63 0 chr9 61299514 61299705 -62776467 + B4 SINE B4 88 290 -2 5 1052 278 255 73 21 chr9 61301067 61301163 -62775009 + MIRb SINE MIR 88 188 -80 5 1052 258 329 59 26 chr9 61301499 61301660 -62774512 - MIR SINE MIR -61 207 40 5 1052 260 53 26 0 chr9 61302180 61302218 -62773954 + (ATGGTG)n Simple_repeat Simple_repeat 1 39 0 5 1052 1002 125 11 6 chr9 61302219 61302396 -62773776 + (TGG)n Simple_repeat Simple_repeat 1 178 0 5 1052 572 250 46 25 chr9 61302398 61302595 -62773577 - HAL1-2a_MD LINE L1 -505 2519 2319 5 1052 473 333 77 35 chr9 61302686 61302947 -62773225 - MER2 DNA MER2_type -49 296 25 5 1052 229 190 190 0 chr9 61303397 61303476 -62772696 + MLT1H-int LTR MaLR 1183 1276 -133 5 1052 203 322 152 0 chr9 61303965 61304083 -62772089 - MIRb SINE MIR -116 152 17 5 1052 207 0 0 0 chr9 61305812 61305835 -62770337 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1052 297 312 9 18 chr9 61306074 61306185 -62769987 + MLT1L LTR MaLR 336 445 -165 5 1052 1128 168 77 0 chr9 61306421 61306630 -62769542 - URR1B DNA MER1_type 0 225 1 5 1052 225 267 25 62 chr9 61306803 61306816 -62769356 - PB1 SINE Alu -40 87 75 5 1052 261 57 0 0 chr9 61306816 61306851 -62769321 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1052 1092 52 0 0 chr9 61306851 61306987 -62769185 - B1_Mus1 SINE Alu -10 138 3 5 1052 225 267 25 62 chr9 61306987 61307052 -62769120 - PB1 SINE Alu -53 74 13 5 1052 430 237 62 0 chr9 61307052 61307084 -62769088 - ID_B1 SINE B4 -67 157 55 5 1052 330 290 139 9 chr9 61309010 61309226 -62766946 - L2a LINE L2 -273 3153 2910 5 1052 322 349 27 69 chr9 61309676 61309864 -62766308 + MIRb SINE MIR 65 244 -24 5 1052 747 152 11 22 chr9 61309987 61310056 -62766116 + polypurine Low_complexity Low_complexity 1 70 0 5 1052 1025 145 0 6 chr9 61310056 61310236 -62765936 + GA-rich Low_complexity Low_complexity 1 179 0 5 1052 747 152 11 22 chr9 61310236 61310348 -62765824 + polypurine Low_complexity Low_complexity 71 180 0 5 1052 927 151 24 0 chr9 61310343 61310580 -62765592 + GA-rich Low_complexity Low_complexity 1 242 0 5 1052 536 244 81 49 chr9 61311559 61311744 -62764428 - B3A SINE B2 -7 191 1 5 1052 524 183 242 0 chr9 61311804 61311924 -62764248 - B1_Mur2 SINE Alu 0 149 1 5 1052 504 0 0 0 chr9 61312181 61312237 -62763935 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1052 693 279 37 41 chr9 61312331 61312574 -62763598 + LTR40b LTR ERVL 171 412 -50 6 1052 243 286 0 67 chr9 61312657 61312732 -62763440 - MLT1J LTR MaLR -202 310 241 6 1052 306 0 0 0 chr9 61312732 61312766 -62763406 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1052 1847 161 66 14 chr9 61312804 61313169 -62763003 + ORR1C2 LTR MaLR 1 384 0 6 1052 1926 174 44 35 chr9 61313169 61313597 -62762575 + ORR1C2-int LTR MaLR 1 432 -1077 6 1052 1106 162 0 10 chr9 61313580 61313780 -62762392 + MTC LTR MaLR 224 421 0 6 1052 240 111 0 0 chr9 61313785 61313821 -62762351 - tRNA-Leu-TTA tRNA tRNA 0 86 51 6 1052 458 148 25 14 chr9 61313804 61313901 -62762271 + ORR1C2 LTR MaLR 234 382 -2 6 1052 308 308 38 9 chr9 61314275 61314380 -62761792 - L2c LINE L2 -187 3200 3093 6 1052 905 298 107 26 chr9 61314512 61314970 -62761202 + RMER5 LTR ERV1 40 534 0 6 1052 715 207 0 14 chr9 61315026 61315168 -62761004 - B1F2 SINE Alu -4 145 6 6 1052 203 324 69 0 chr9 61315371 61315473 -62760699 - MIR SINE MIR -26 236 128 6 1052 936 51 0 0 chr9 61316664 61316782 -62759390 + (TC)n Simple_repeat Simple_repeat 1 118 0 6 1052 324 0 0 0 chr9 61316782 61316817 -62759355 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1052 958 168 8 12 chr9 61317338 61317596 -62758576 + CT-rich Low_complexity Low_complexity 1 256 0 6 1052 222 305 0 17 chr9 61317606 61317688 -62758484 + L2a LINE L2 3310 3426 0 6 1052 763 279 51 0 chr9 61318221 61318458 -62757714 - B4A SINE B4 -30 262 14 6 1052 618 39 0 0 chr9 61320038 61320115 -62756057 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 6 1052 305 177 0 12 chr9 61320410 61320490 -62755682 + CT-rich Low_complexity Low_complexity 2 80 0 6 1052 26 0 0 0 chr9 61321213 61321239 -62754933 + AT_rich Low_complexity Low_complexity 1 26 0 6 1052 1121 62 7 0 chr9 61321254 61321399 -62754773 + B1_Mus1 SINE Alu 3 148 0 6 1052 508 197 113 35 chr9 61321485 61321627 -62754545 - URR1B DNA MER1_type -14 211 59 6 1052 411 213 56 68 chr9 61322535 61322696 -62753476 - MLT1H LTR MaLR -352 197 39 6 1052 401 214 10 0 chr9 61322729 61322832 -62753340 + (TCTG)n Simple_repeat Simple_repeat 3 106 0 6 1052 387 0 0 0 chr9 61322885 61322928 -62753244 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1052 468 0 0 0 chr9 61322928 61322979 -62753193 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1052 928 220 178 55 chr9 61322979 61323388 -62752784 - RMER5 LTR ERV1 -20 514 56 6 1052 328 283 75 0 chr9 61323634 61323740 -62752432 + PB1D7 SINE Alu 7 120 0 6 1052 945 122 0 13 chr9 61323779 61323928 -62752244 + B1_Mur3 SINE Alu 1 147 -2 6 1052 549 110 0 0 chr9 61323930 61324012 -62752160 + (GGA)n Simple_repeat Simple_repeat 3 84 0 6 1052 221 193 17 17 chr9 61325417 61325475 -62750697 - MIR SINE MIR -94 168 111 6 1052 643 239 14 0 chr9 61325862 61326000 -62750172 + RSINE1 SINE B4 2 141 -24 6 1052 432 296 14 29 chr9 61326003 61326142 -62750030 - B4 SINE B4 -153 139 3 6 1052 234 237 111 102 chr9 61326234 61326342 -62749830 + B4A SINE B4 184 292 0 6 1052 282 244 0 0 chr9 61326430 61326512 -62749660 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1052 373 60 0 0 chr9 61326578 61326628 -62749544 + HAL1-3A_ME LINE L1 1976 2025 -833 6 1052 357 222 102 0 chr9 61326818 61326926 -62749246 - MER5A1 DNA MER1_type -4 162 44 6 1052 382 232 69 132 chr9 61327070 61327244 -62748928 + RSINE1 SINE B4 2 164 -1 6 1052 545 285 38 6 chr9 61327890 61328049 -62748123 + RSINE1 SINE B4 2 165 0 6 1052 528 238 0 0 chr9 61328050 61328218 -62747954 + (CA)n Simple_repeat Simple_repeat 2 169 0 6 1052 750 295 43 43 chr9 61328772 61328957 -62747215 - B4 SINE B4 -12 280 89 6 1052 1011 120 0 0 chr9 61328957 61329115 -62747057 + (CCTG)n Simple_repeat Simple_repeat 2 159 0 6 1052 750 295 43 43 chr9 61329115 61329209 -62746963 - B4 SINE B4 -204 88 1 6 1052 208 310 17 42 chr9 61329386 61329504 -62746668 - MIRb SINE MIR -71 197 83 6 1052 895 291 102 15 chr9 61329863 61330128 -62746044 + B4 SINE B4 1 288 -4 6 1052 186 43 0 0 chr9 61330349 61330372 -62745800 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1052 643 269 12 12 chr9 61330372 61330390 -62745782 - RSINE1 SINE B4 -3 162 145 6 1052 360 0 0 0 chr9 61330390 61330430 -62745742 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1052 643 269 12 12 chr9 61330430 61330573 -62745599 - RSINE1 SINE B4 -21 144 1 6 1052 1149 40 14 0 chr9 61330771 61330919 -62745253 + B1_Mur4 SINE Alu 1 150 0 6 1052 475 233 112 40 chr9 61331482 61331634 -62744538 + RSINE1 SINE B4 3 165 0 6 1052 1346 196 129 18 chr9 61331707 61332040 -62744132 - ORR1D2 LTR MaLR 0 370 1 6 1052 258 308 0 32 chr9 61332816 61332910 -62743262 + CT-rich Low_complexity Low_complexity 5 95 0 6 1052 714 325 34 48 chr9 61333114 61333322 -62742850 + B4A SINE B4 2 208 -84 6 1052 920 201 0 11 chr9 61333322 61333484 -62742688 + B3A SINE B2 1 160 -38 6 1052 396 0 0 0 chr9 61333484 61333528 -62742644 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1052 920 201 0 11 chr9 61333528 61333546 -62742626 + B3A SINE B2 161 178 -20 6 1052 714 325 34 48 chr9 61333546 61333631 -62742541 + B4A SINE B4 209 291 -1 6 1052 500 260 75 54 chr9 61334545 61334785 -62741387 + MIRc SINE MIR 23 267 -1 6 1052 679 225 51 0 chr9 61336574 61336712 -62739460 + B4A SINE B4 11 155 -137 6 1052 558 43 0 0 chr9 61336714 61336783 -62739389 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 1052 287 298 75 56 chr9 61337666 61337826 -62738346 + MIRb SINE MIR 51 213 -55 6 1052 188 152 0 42 chr9 61338290 61338338 -62737834 + CT-rich Low_complexity Low_complexity 1 46 0 6 1052 425 155 28 0 chr9 61338615 61338686 -62737486 - ID4 SINE ID -7 76 4 6 1052 265 232 65 26 chr9 61338929 61339014 -62737158 + MIRc SINE MIR 84 170 -92 6 1052 240 395 17 9 chr9 61339810 61339925 -62736247 + ID_B1 SINE B4 5 120 -104 6 1052 423 210 0 0 chr9 61340116 61340216 -62735956 + (CA)n Simple_repeat Simple_repeat 2 101 0 6 1052 378 42 0 0 chr9 61340570 61340618 -62735554 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1052 569 296 216 9 chr9 61341149 61341367 -62734805 + B4A SINE B4 26 288 -4 6 1053 809 171 14 14 chr9 61341954 61342102 -62734070 + B1_Mur4 SINE Alu 2 149 -1 6 1053 645 229 41 71 chr9 61342164 61342333 -62733839 + RSINE1 SINE B4 2 165 0 6 1053 851 255 32 52 chr9 61342666 61342914 -62733258 - B4A SINE B4 -49 243 1 6 1053 819 80 0 0 chr9 61343125 61343237 -62732935 + (TTTTG)n Simple_repeat Simple_repeat 1 112 0 6 1053 624 234 225 12 chr9 61343462 61343513 -62732659 - B3 SINE B2 -6 210 142 6 1053 216 0 0 0 chr9 61343513 61343537 -62732635 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1053 624 234 225 12 chr9 61343537 61343658 -62732514 - B3 SINE B2 -75 141 2 6 1053 477 0 0 0 chr9 61344255 61344308 -62731864 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 6 1053 367 206 78 10 chr9 61344320 61344440 -62731732 - L1MB4 LINE L1 -18 6156 6025 6 1053 239 218 0 18 chr9 61344962 61345018 -62731154 - MLT1D LTR MaLR -10 495 441 6 1053 554 248 53 0 chr9 61345021 61345154 -62731018 + B1_Mur3 SINE Alu 1 140 -9 6 1053 781 127 23 0 chr9 61345633 61345806 -62730366 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 6 1053 219 36 0 0 chr9 61345829 61345857 -62730315 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 6 1053 552 310 38 29 chr9 61346220 61346429 -62729743 - B4 SINE B4 -81 211 1 6 1053 568 269 67 7 chr9 61346606 61346741 -62729431 + RSINE1 SINE B4 2 144 -21 6 1053 404 274 51 22 chr9 61346810 61346948 -62729224 + B4A SINE B4 149 290 -2 6 1053 183 242 20 10 chr9 61346951 61347051 -62729121 + (CA)n Simple_repeat Simple_repeat 2 102 0 6 1053 340 340 85 62 chr9 61347329 61347589 -62728583 - L1M4 LINE L1 -1069 5077 4812 6 1053 401 281 9 9 chr9 61347697 61347812 -62728360 + PB1D10 SINE Alu 1 115 -2 6 1053 844 229 83 58 chr9 61347843 61348189 -62727983 + ORR1C1 LTR MaLR 5 378 0 6 1053 279 160 0 0 chr9 61348310 61348385 -62727787 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 6 1053 563 330 60 43 chr9 61348600 61348951 -62727221 - L1MC LINE L1 -2143 5739 5383 6 1053 21 57 0 0 chr9 61349043 61349078 -62727094 + AT_rich Low_complexity Low_complexity 1 35 0 6 1053 257 204 74 0 chr9 61349819 61349873 -62726299 + MTEa LTR MaLR 1 58 -321 6 1053 877 192 23 11 chr9 61349879 61350053 -62726119 + MTEa LTR MaLR 204 379 0 6 1053 328 292 11 11 chr9 61350054 61350144 -62726028 - L1MC LINE L1 -1602 4544 4455 6 1053 379 382 46 29 chr9 61350190 61350430 -62725742 + MER102a DNA MER1_type 78 321 -9 6 1053 184 292 9 111 chr9 61350867 61350975 -62725197 - L2c LINE L2 0 3387 3291 6 1053 295 348 79 16 chr9 61351230 61351420 -62724752 + MIR3 SINE MIR 5 206 -2 6 1053 548 276 0 0 chr9 61352280 61352403 -62723769 + RSINE1 SINE B4 4 126 -39 6 1053 318 50 0 0 chr9 61353057 61353097 -62723075 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 6 1053 545 305 70 48 chr9 61353290 61353562 -62722610 + B4A SINE B4 1 278 -14 6 1053 209 108 0 26 chr9 61353624 61353662 -62722510 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1053 183 216 0 0 chr9 61354124 61354161 -62722011 + MIR SINE MIR 55 91 -171 6 1053 302 282 56 71 chr9 61354195 61354211 -62721961 + ID_B1 SINE B4 78 91 -133 6 1053 593 202 114 0 chr9 61354211 61354325 -62721847 + B1_Mur3 SINE Alu 1 127 -22 6 1053 717 73 0 0 chr9 61354325 61354421 -62721751 + (TC)n Simple_repeat Simple_repeat 1 96 0 6 1053 219 36 0 0 chr9 61354421 61354449 -62721723 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1053 378 0 0 0 chr9 61354449 61354490 -62721682 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1053 1025 240 243 0 chr9 61354564 61354856 -62721316 - MTD LTR MaLR -14 405 43 7 1053 275 237 0 0 chr9 61355430 61355489 -62720683 - RSINE1 SINE B4 -104 61 3 7 1053 708 237 0 100 chr9 61356520 61356740 -62719432 - B3A SINE B2 0 198 1 7 1053 225 0 0 0 chr9 61356756 61356781 -62719391 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 7 1053 200 360 72 44 chr9 61356836 61357016 -62719156 - L2c LINE L2 -40 3347 3163 7 1053 872 309 43 15 chr9 61357043 61357372 -62718800 + ORSL-2a DNA Tip100 5 342 0 7 1053 504 0 0 0 chr9 61358674 61358730 -62717442 + (TC)n Simple_repeat Simple_repeat 2 57 0 7 1053 504 0 0 0 chr9 61358730 61358785 -62717387 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1053 255 306 102 31 chr9 61359787 61359915 -62716257 + L2b LINE L2 3266 3426 0 7 1053 356 278 46 47 chr9 61359981 61360132 -62716040 - MLT1A1 LTR MaLR -10 398 182 7 1053 360 0 0 0 chr9 61360132 61360172 -62716000 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1053 332 338 110 64 chr9 61360172 61360355 -62715817 - MLT1A1 LTR MaLR -184 181 6 7 1053 281 26 26 0 chr9 61360412 61360450 -62715722 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 1053 361 257 24 124 chr9 61360535 61360744 -62715428 - L1M3 LINE L1 -2590 3553 3366 7 1053 387 0 0 0 chr9 61360760 61360803 -62715369 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1053 536 245 62 4 chr9 61360898 61361109 -62715063 + B4A SINE B4 5 278 -14 7 1053 1030 275 77 59 chr9 61361198 61361759 -62714413 - L1M3 LINE L1 -3018 3122 2552 7 1053 947 246 63 0 chr9 61361793 61362000 -62714172 + ID_B1 SINE B4 5 224 0 7 1053 438 380 39 31 chr9 61362810 61363168 -62713004 + ERVL-B4-int LTR ERVL 2890 3250 -2464 7 1053 251 330 108 17 chr9 61363442 61363618 -62712554 + ERVL-B4-int LTR ERVL 3362 3553 -1443 7 1053 302 286 60 0 chr9 61364617 61364701 -62711471 - Lx8 LINE L1 -1571 5902 5814 7 1053 306 73 0 0 chr9 61364824 61364865 -62711307 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 7 1053 624 313 28 17 chr9 61364944 61365233 -62710939 + B4A SINE B4 1 292 0 7 1053 202 182 0 0 chr9 61365238 61365271 -62710901 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1053 24 0 0 0 chr9 61365500 61365524 -62710648 + AT_rich Low_complexity Low_complexity 1 24 0 7 1053 201 296 198 0 chr9 61365556 61365637 -62710535 + MIRc SINE MIR 44 140 -128 7 1053 810 276 87 62 chr9 61367034 61367389 -62708783 - MTEa LTR MaLR -2 377 14 7 1053 294 312 54 0 chr9 61368091 61368184 -62707988 + LTR16A1 LTR ERVL 5 102 -354 7 1053 1295 253 70 94 chr9 61368196 61368611 -62707561 - MTD LTR MaLR -14 405 1 7 1053 369 0 0 0 chr9 61368717 61368758 -62707414 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1053 1118 257 25 4 chr9 61368777 61369019 -62707153 + B4 SINE B4 10 256 -36 7 1053 304 349 94 44 chr9 61369790 61369970 -62706202 + L1MEe LINE L1 679 867 -5505 7 1053 443 174 47 0 chr9 61370211 61370297 -62705875 + B3A SINE B2 1 90 -108 7 1053 263 358 79 15 chr9 61370482 61370749 -62705423 + L1MEe LINE L1 1208 1491 -4881 7 1053 755 268 0 12 chr9 61370885 61371051 -62705121 - RSINE1 SINE B4 0 165 2 7 1053 1203 52 0 0 chr9 61371068 61371223 -62704949 + L1_Mus4 LINE L1 5638 5792 -844 7 1053 411 238 104 7 chr9 61371218 61371362 -62704810 + RMER1B Other Other 908 1065 -1 7 1053 491 45 0 15 chr9 61371461 61371528 -62704644 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 7 1053 2898 41 9 6 chr9 61371569 61371914 -62704258 - ORR1A1 LTR MaLR 0 346 1 7 1053 311 294 67 40 chr9 61372058 61372098 -62704074 + MT2B LTR ERVL 126 169 -432 7 1053 761 109 24 2 chr9 61372098 61372224 -62703948 + B1_Mur4 SINE Alu 2 138 -10 7 1053 463 242 0 32 chr9 61372231 61372347 -62703825 + PB1D10 SINE Alu 2 110 -7 7 1053 578 309 0 36 chr9 61372793 61372961 -62703211 + RSINE1 SINE B4 4 165 0 7 1053 254 337 24 0 chr9 61372963 61373046 -62703126 + (CA)n Simple_repeat Simple_repeat 1 85 0 7 1053 564 354 71 42 chr9 61373048 61373418 -62702754 + L1MEe LINE L1 2170 2554 -3848 7 1053 330 26 0 0 chr9 61373620 61373659 -62702513 + (CAAAA)n Simple_repeat Simple_repeat 4 42 0 7 1053 831 286 10 0 chr9 61373736 61373932 -62702240 + B3A SINE B2 1 198 0 7 1053 285 75 0 0 chr9 61373934 61373974 -62702198 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1053 683 167 13 19 chr9 61373974 61374133 -62702039 + GA-rich Low_complexity Low_complexity 6 163 0 7 1053 251 153 40 27 chr9 61374513 61374529 -62701643 - RMER17C LTR ERVK -151 259 242 7 1053 243 0 0 0 chr9 61374529 61374556 -62701616 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1053 251 153 40 27 chr9 61374556 61374613 -62701559 - RMER17C LTR ERVK -169 241 185 7 1053 882 95 0 0 chr9 61374708 61374834 -62701338 + (CCCCCT)n Simple_repeat Simple_repeat 5 130 0 7 1053 432 293 97 66 chr9 61375343 61375602 -62700570 + MLT1M LTR MaLR 103 369 -303 7 1053 422 298 17 3 chr9 61376622 61376977 -62699195 + (TG)n Simple_repeat Simple_repeat 1 360 0 7 1053 410 188 40 23 chr9 61376987 61377161 -62699011 + (TATG)n Simple_repeat Simple_repeat 2 178 0 7 1053 193 274 19 0 chr9 61377247 61377353 -62698819 + (TG)n Simple_repeat Simple_repeat 2 109 0 7 1053 673 257 46 82 chr9 61377495 61377690 -62698482 + B4A SINE B4 97 284 -8 7 1053 342 0 0 0 chr9 61377701 61377739 -62698433 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1053 186 71 0 0 chr9 61377872 61377900 -62698272 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1053 1300 202 107 4 chr9 61378731 61378974 -62697198 + B4A SINE B4 1 271 -21 7 1053 315 65 0 0 chr9 61378974 61379020 -62697152 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 7 1053 1300 202 107 4 chr9 61379020 61379039 -62697133 + B4A SINE B4 272 290 -2 7 1053 671 249 50 15 chr9 61379204 61379404 -62696768 + RMER15 LTR ERVL 348 554 -21 7 1053 275 280 117 23 chr9 61380254 61380420 -62695752 + MIR3 SINE MIR 2 192 -84 7 1053 867 288 14 84 chr9 61380563 61380859 -62695313 - B4A SINE B4 -17 275 1 7 1053 362 270 117 29 chr9 61381001 61381104 -62695068 - MER2 DNA MER2_type -6 339 228 7 1053 270 309 133 10 chr9 61382056 61382154 -62694018 - MER2 DNA MER2_type -227 118 9 7 1053 1980 157 9 24 chr9 61382819 61383159 -62693013 - MTC LTR MaLR -8 413 79 7 1053 463 167 0 0 chr9 61383158 61383230 -62692942 - B1_Mus2 SINE Alu -30 117 46 7 1053 392 147 67 0 chr9 61383228 61383303 -62692869 - MTC LTR MaLR -338 83 4 7 1053 423 0 0 0 chr9 61383583 61383630 -62692542 + (TCTG)n Simple_repeat Simple_repeat 3 49 0 7 1053 412 279 192 0 chr9 61383639 61383811 -62692361 - ID_B1 SINE B4 -19 205 1 7 1053 289 152 76 0 chr9 61384073 61384139 -62692033 + L1MB7 LINE L1 6114 6184 0 7 1053 450 325 129 80 chr9 61384152 61384416 -62691756 + B4 SINE B4 5 281 -11 7 1053 395 38 0 19 chr9 61384437 61384491 -62691681 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1053 306 0 0 0 chr9 61384548 61384582 -62691590 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 7 1053 339 333 0 38 chr9 61385579 61385824 -62690348 + G-rich Low_complexity Low_complexity 1 235 0 7 1053 296 48 0 23 chr9 61386141 61386184 -62689988 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1053 280 227 255 18 chr9 61386629 61386757 -62689415 - MIRb SINE MIR -5 203 51 7 1053 206 58 75 19 chr9 61387598 61387651 -62688521 + (GGGTG)n Simple_repeat Simple_repeat 3 58 0 7 1053 5481 106 18 65 chr9 61388102 61389032 -62687140 + RMER17D LTR ERVK 1 887 -2 7 1053 1306 214 82 90 chr9 61389304 61389659 -62686513 + ORR1D1 LTR MaLR 23 374 0 7 1053 258 143 0 0 chr9 61389733 61389782 -62686390 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 7 1053 383 341 61 39 chr9 61390000 61390180 -62685992 + MIRb SINE MIR 47 230 -38 7 1053 708 256 61 0 chr9 61391864 61392044 -62684128 + ID_B1 SINE B4 34 224 0 7 1053 265 345 121 20 chr9 61392167 61392365 -62683807 + MLT1J LTR MaLR 32 249 -263 7 1053 240 35 0 0 chr9 61392685 61392714 -62683458 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 1053 894 179 387 4 chr9 61392717 61392986 -62683186 + ORR1D1 LTR MaLR 1 372 -2 7 1053 496 336 52 0 chr9 61392988 61393122 -62683050 - RSINE1 SINE B4 -9 156 16 7 1053 678 247 0 0 chr9 61393139 61393317 -62682855 + CT-rich Low_complexity Low_complexity 3 180 0 7 1053 304 265 40 10 chr9 61393370 61393469 -62682703 - Lx8 LINE L1 -216 7257 7156 7 1053 291 316 11 92 chr9 61393874 61394059 -62682113 + B3A SINE B2 20 189 -9 7 1053 808 186 7 20 chr9 61394199 61394347 -62681825 + B1F SINE Alu 3 148 -1 7 1053 191 245 0 39 chr9 61394431 61394482 -62681690 + L2a LINE L2 3354 3402 -24 7 1053 4283 55 2 2 chr9 61394690 61395202 -62680970 + RLTR1B LTR ERV1 1 512 0 7 1053 441 0 0 0 chr9 61395923 61395972 -62680200 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1053 411 275 102 61 chr9 61396505 61396652 -62679520 + RSINE1 SINE B4 13 165 0 7 1053 21 0 0 0 chr9 61396668 61396689 -62679483 + AT_rich Low_complexity Low_complexity 1 21 0 7 1053 451 250 71 51 chr9 61397743 61397903 -62678269 + MIRb SINE MIR 53 219 -49 7 1053 621 339 36 66 chr9 61398073 61398376 -62677796 + MER2 DNA MER2_type 5 298 -47 7 1053 235 270 127 63 chr9 61398829 61398987 -62677185 + MIR SINE MIR 92 259 -3 7 1053 437 195 12 24 chr9 61399430 61399514 -62676658 + B4 SINE B4 5 87 -205 7 1053 223 287 0 85 chr9 61399431 61399517 -62676655 + BC1_Mm scRNA scRNA 6 84 -68 7 1053 1029 221 14 23 chr9 61399517 61399735 -62676437 + B3 SINE B2 1 216 0 7 1053 223 287 0 85 chr9 61399735 61399789 -62676383 + BC1_Mm scRNA scRNA 85 134 -18 7 1053 1061 219 5 24 chr9 61399819 61400029 -62676143 + B4 SINE B4 85 290 -2 7 1053 759 155 0 0 chr9 61400081 61400255 -62675917 + (CA)n Simple_repeat Simple_repeat 1 174 0 7 1053 367 248 23 93 chr9 61400465 61400594 -62675578 + MER3 DNA MER1_type 78 197 -12 7 1053 988 215 27 50 chr9 61400789 61401009 -62675163 + ID_B1 SINE B4 9 223 -1 7 1053 294 29 0 0 chr9 61401279 61401314 -62674858 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1053 597 14 0 0 chr9 61401314 61401383 -62674789 + (GA)n Simple_repeat Simple_repeat 2 71 0 8 1053 710 267 7 7 chr9 61401877 61402024 -62674148 - RSINE1 SINE B4 -16 149 3 8 1053 668 262 64 41 chr9 61402132 61402303 -62673869 + B4 SINE B4 118 292 0 8 1053 186 250 78 132 chr9 61402657 61402786 -62673386 + MIRc SINE MIR 29 150 -118 8 1053 219 200 20 20 chr9 61402998 61403049 -62673123 + (CATG)n Simple_repeat Simple_repeat 1 51 0 8 1053 585 176 31 23 chr9 61403049 61403177 -62672995 - RSINE1 SINE B4 0 165 37 8 1053 235 242 9 209 chr9 61403391 61403506 -62672666 + MT2A LTR ERVL 1 92 -441 8 1053 1381 244 91 16 chr9 61403410 61403784 -62672388 + MTD LTR MaLR 18 419 0 8 1053 444 15 43 14 chr9 61403889 61403958 -62672214 + (TTTTG)n Simple_repeat Simple_repeat 2 72 0 8 1053 272 318 126 9 chr9 61404275 61404386 -62671786 - L2 LINE L2 -498 2921 2798 8 1053 511 294 10 115 chr9 61404410 61404602 -62671570 + B4A SINE B4 1 172 -120 8 1053 912 264 112 47 chr9 61404623 61405069 -62671103 - L2 LINE L2 -650 2769 2295 8 1053 300 331 103 21 chr9 61407199 61407344 -62668828 + B4 SINE B4 125 281 -11 8 1053 416 258 59 59 chr9 61407403 61407605 -62668567 + ORR1E LTR MaLR 44 245 -114 8 1053 358 325 44 83 chr9 61408447 61408652 -62667520 + LTR88b LTR Gypsy? 641 837 0 8 1053 1010 257 43 0 chr9 61408830 61409083 -62667089 + MTEa LTR MaLR 23 286 -93 8 1053 387 0 0 0 chr9 61410044 61410087 -62666085 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1053 225 0 0 0 chr9 61410680 61410705 -62665467 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1053 186 43 0 0 chr9 61411770 61411793 -62664379 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1053 871 217 7 0 chr9 61411851 61412003 -62664169 + RSINE1 SINE B4 2 154 -11 8 1053 262 292 18 122 chr9 61412072 61412220 -62663952 - MLT1B LTR MaLR -53 337 180 8 1053 378 0 0 0 chr9 61412220 61412262 -62663910 + (TC)n Simple_repeat Simple_repeat 2 43 0 8 1053 453 36 0 0 chr9 61412262 61412316 -62663856 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1053 259 292 18 122 chr9 61412316 61412330 -62663842 - MLT1B LTR MaLR -186 179 166 8 1053 31 44 0 0 chr9 61412349 61412394 -62663778 + AT_rich Low_complexity Low_complexity 1 45 0 8 1053 944 167 0 0 chr9 61412810 61412948 -62663224 - B1_Mur3 SINE Alu -10 139 2 8 1053 664 248 121 24 chr9 61412948 61413155 -62663017 - B4 SINE B4 -65 227 1 8 1053 390 306 86 125 chr9 61413551 61413783 -62662389 - MLT1A1 LTR MaLR -4 404 187 8 1053 1362 94 15 20 chr9 61413783 61413979 -62662193 - B2_Mm2 SINE B2 0 195 1 8 1053 390 306 86 125 chr9 61413979 61414153 -62662019 - MLT1A1 LTR MaLR -222 186 14 8 1053 677 12 12 0 chr9 61414199 61414281 -62661891 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 1053 1326 157 117 4 chr9 61414314 61414563 -62661609 - B4 SINE B4 -13 279 3 8 1053 258 208 95 83 chr9 61414739 61414823 -62661349 - MLT1K LTR MaLR -317 278 194 8 1053 749 99 4 63 chr9 61414926 61415166 -62661006 + (CA)n Simple_repeat Simple_repeat 1 225 0 8 1053 561 167 11 39 chr9 61415184 61415365 -62660807 + (CA)n Simple_repeat Simple_repeat 2 177 0 8 1053 309 160 0 54 chr9 61415386 61415498 -62660674 + (CA)n Simple_repeat Simple_repeat 1 106 0 8 1053 294 341 160 46 chr9 61415509 61415816 -62660356 + LTR89 LTR ERVL? 308 649 -230 8 1053 228 328 70 43 chr9 61415864 61416049 -62660123 - L1MD2 LINE L1 -22 6337 6148 8 1053 938 205 82 31 chr9 61416282 61416478 -62659694 + B3 SINE B2 10 215 -1 8 1053 861 128 0 0 chr9 61416724 61416904 -62659268 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 1053 1482 181 71 48 chr9 61417293 61417647 -62658525 - ORR1D2 LTR MaLR -4 366 5 8 1053 242 307 88 0 chr9 61417768 61417905 -62658267 + LTR88c LTR Genie? 3 151 -711 8 1053 479 101 13 0 chr9 61418354 61418433 -62657739 + (TCC)n Simple_repeat Simple_repeat 2 81 0 8 1053 215 201 49 21 chr9 61418424 61418566 -62657606 + CT-rich Low_complexity Low_complexity 3 148 0 8 1053 1683 159 98 38 chr9 61418707 61419154 -62657018 - RLTR12B LTR ERVK 0 528 1 8 1053 184 324 53 44 chr9 61420489 61420602 -62655570 + MIRc SINE MIR 2 115 -153 8 1053 942 262 121 55 chr9 61422559 61422803 -62653369 - MTD LTR MaLR -14 405 143 8 1053 447 0 48 0 chr9 61422803 61422866 -62653306 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1053 942 262 121 55 chr9 61422866 61423001 -62653171 - MTD LTR MaLR -277 142 1 8 1053 608 297 123 9 chr9 61424626 61424837 -62651335 - MTEa LTR MaLR -2 377 143 8 1053 572 286 68 0 chr9 61424977 61425110 -62651062 - RSINE1 SINE B4 -22 143 2 8 1053 1974 206 46 8 chr9 61425433 61425825 -62650347 + MTB_Mm LTR MaLR 1 407 0 8 1053 568 211 36 27 chr9 61427600 61427712 -62648460 - PB1D10 SINE Alu -2 115 3 8 1053 741 270 153 12 chr9 61427921 61428176 -62647996 + B4 SINE B4 2 292 0 8 1053 741 155 0 0 chr9 61428177 61428325 -62647847 + (CA)n Simple_repeat Simple_repeat 2 149 0 8 1053 582 194 294 0 chr9 61430906 61431059 -62645113 - ID_B1 SINE B4 -19 205 8 8 1053 182 322 0 0 chr9 61432171 61432230 -62643942 - MIR3 SINE MIR -4 204 146 8 1053 851 240 177 12 chr9 61432315 61432564 -62643608 + B4 SINE B4 3 292 0 8 1053 258 243 14 54 chr9 61432826 61432842 -62643330 - B1F SINE Alu -77 72 3 8 1053 307 193 18 0 chr9 61432842 61432899 -62643273 - ID_B1 SINE B4 -83 141 84 8 1053 678 25 0 0 chr9 61433205 61433285 -62642887 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 8 1053 483 188 17 17 chr9 61433357 61433536 -62642636 + (TA)n Simple_repeat Simple_repeat 2 180 0 8 1053 22 35 0 0 chr9 61433676 61433705 -62642467 + AT_rich Low_complexity Low_complexity 1 29 0 8 1053 611 0 27 0 chr9 61433706 61433780 -62642392 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 8 1053 468 0 0 0 chr9 61433861 61433913 -62642259 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 8 1053 363 191 218 0 chr9 61433922 61434032 -62642140 - ID_B1 SINE B4 0 224 91 8 1053 234 352 46 9 chr9 61434266 61434375 -62641797 + L3 LINE CR1 3300 3412 -1077 8 1053 1426 236 98 18 chr9 61434428 61434816 -62641356 - MTD LTR MaLR 0 419 1 8 1053 432 0 0 0 chr9 61435082 61435130 -62641042 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1053 1106 67 0 29 chr9 61435202 61435341 -62640831 + B1_Mus1 SINE Alu 2 136 -12 8 1053 861 76 0 0 chr9 61435342 61435473 -62640699 + (GA)n Simple_repeat Simple_repeat 2 132 0 8 1053 292 179 0 51 chr9 61435475 61435534 -62640638 + B4 SINE B4 22 77 -215 8 1053 414 0 0 0 chr9 61436068 61436114 -62640058 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1053 250 325 12 12 chr9 61436854 61436935 -62639237 - ID4_ SINE ID -1 82 2 8 1053 376 309 43 14 chr9 61436944 61437082 -62639090 - B1F1 SINE Alu -7 142 1 8 1053 681 255 0 47 chr9 61437565 61437734 -62638438 - RSINE1 SINE B4 -3 162 2 8 1053 440 245 0 54 chr9 61438630 61438763 -62637409 + B4 SINE B4 21 143 -149 8 1053 228 241 0 0 chr9 61438715 61438769 -62637403 + PB1D10 SINE Alu 11 64 -53 8 1053 837 113 0 0 chr9 61438773 61438932 -62637240 + (CA)n Simple_repeat Simple_repeat 1 159 0 8 1053 189 195 0 0 chr9 61438953 61438994 -62637178 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1053 793 282 116 14 chr9 61439039 61439323 -62636849 + MLT1A1 LTR MaLR 84 396 -12 8 1053 22 0 0 0 chr9 61439715 61439737 -62636435 + AT_rich Low_complexity Low_complexity 1 22 0 8 1053 358 314 49 49 chr9 61439952 61440096 -62636076 + MLT1J LTR MaLR 227 370 -142 8 1053 283 224 45 0 chr9 61441447 61441514 -62634658 - MER5A DNA MER1_type -87 102 33 8 1053 542 288 110 5 chr9 61442260 61442502 -62633670 + B4 SINE B4 2 271 -21 8 1053 205 135 0 51 chr9 61442504 61442543 -62633629 + C-rich Low_complexity Low_complexity 2 38 0 8 1053 21 0 0 0 chr9 61443902 61443923 -62632249 + AT_rich Low_complexity Low_complexity 1 21 0 8 1053 280 277 0 0 chr9 61443931 61443996 -62632176 - ID4 SINE ID -17 66 2 8 1053 225 209 0 0 chr9 61444204 61444247 -62631925 - L4 LINE RTE -195 1834 1792 8 1053 343 0 43 0 chr9 61446248 61446295 -62629877 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 8 1053 1155 238 66 7 chr9 61446305 61446609 -62629563 - MTEa LTR MaLR -31 348 27 8 1053 858 267 69 11 chr9 61447933 61448209 -62627963 + B4A SINE B4 1 292 0 8 1053 495 0 0 0 chr9 61448678 61448733 -62627439 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 8 1053 690 281 34 77 chr9 61449296 61449531 -62626641 - B4A SINE B4 -67 225 1 8 1053 222 148 0 0 chr9 61449538 61449592 -62626580 + (T)n Simple_repeat Simple_repeat 1 54 0 8 1053 393 267 0 25 chr9 61449593 61449712 -62626460 - PB1D10 SINE Alu -1 116 1 8 1053 489 230 0 0 chr9 61450108 61450286 -62625886 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 1053 600 138 0 0 chr9 61450303 61450419 -62625753 + (CA)n Simple_repeat Simple_repeat 2 117 0 8 1053 549 239 0 0 chr9 61451552 61451711 -62624461 + (TG)n Simple_repeat Simple_repeat 1 159 0 8 1053 356 285 40 8 chr9 61451783 61451907 -62624265 - B1F1 SINE Alu -21 128 1 8 1053 553 344 100 52 chr9 61451944 61452465 -62623707 + Arthur1 DNA Tip100 3435 3775 -172 8 1053 508 306 116 12 chr9 61452507 61452765 -62623407 - B4A SINE B4 -5 287 3 8 1053 431 111 207 12 chr9 61452904 61452986 -62623186 - B1_Mur4 SINE Alu 0 150 53 8 1053 1305 135 18 5 chr9 61453702 61453925 -62622247 + URR1A DNA MER1_type 1 226 0 8 1053 1074 97 17 0 chr9 61454760 61454935 -62621237 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 8 1053 216 0 0 0 chr9 61454937 61454961 -62621211 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 8 1053 838 284 8 16 chr9 61455273 61455520 -62620652 + MER58B DNA MER1_type 39 283 -58 8 1053 291 275 43 32 chr9 61455528 61455622 -62620550 + B4A SINE B4 3 97 -195 8 1053 286 245 8 109 chr9 61455651 61455770 -62620402 + B4A SINE B4 186 292 0 8 1053 297 0 0 0 chr9 61455784 61455817 -62620355 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1053 847 43 17 0 chr9 61455822 61455938 -62620234 + (GAAAA)n Simple_repeat Simple_repeat 2 119 0 9 1053 777 265 47 87 chr9 61456328 61456604 -62619568 - B4A SINE B4 0 292 28 9 1053 1099 208 243 3 chr9 61456604 61456942 -62619230 - MTD LTR MaLR 0 419 1 9 1053 709 209 109 33 chr9 61457193 61457376 -62618796 - RMER30 DNA MER1_type 0 202 6 9 1053 791 288 70 33 chr9 61457375 61457648 -62618524 + B4A SINE B4 7 289 -3 9 1053 769 13 90 0 chr9 61458113 61458268 -62617904 + (TC)n Simple_repeat Simple_repeat 1 169 0 9 1053 597 297 117 40 chr9 61458457 61458731 -62617441 - MTEa LTR MaLR -84 295 1 9 1053 270 314 10 19 chr9 61458979 61459083 -62617089 + L1MB5 LINE L1 6025 6127 -47 9 1053 747 225 134 0 chr9 61459517 61459704 -62616468 - ID_B1 SINE B4 -9 215 4 9 1053 332 226 14 28 chr9 61459988 61460129 -62616043 + GA-rich Low_complexity Low_complexity 2 140 0 9 1053 1123 101 6 16 chr9 61460472 61460654 -62615518 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 9 1053 3273 119 78 69 chr9 61460683 61461289 -62614883 - RMER19C LTR ERVK 0 611 1 9 1053 380 221 113 19 chr9 61461339 61461445 -62614727 + ID_B1 SINE B4 104 219 -5 9 1053 264 367 0 72 chr9 61461454 61461551 -62614621 + B1F1 SINE Alu 1 90 -59 9 1053 234 207 0 0 chr9 61461578 61461636 -62614536 + GA-rich Low_complexity Low_complexity 3 60 0 9 1053 408 247 0 0 chr9 61461794 61461875 -62614297 + RSINE1 SINE B4 6 86 -79 9 1053 272 337 33 0 chr9 61461875 61461886 -62614286 + B3 SINE B2 5 99 -117 9 1053 360 0 0 0 chr9 61462192 61462232 -62613940 + (ATG)n Simple_repeat Simple_repeat 2 41 0 9 1053 964 230 10 20 chr9 61462237 61462432 -62613740 - B3 SINE B2 -22 194 2 9 1053 1156 233 96 48 chr9 61462785 61463119 -62613053 - MTE2b LTR MaLR -22 357 8 9 1053 231 250 0 91 chr9 61463909 61463975 -62612197 + ID_B1 SINE B4 96 155 -69 9 1053 219 261 7 229 chr9 61463975 61464053 -62612119 + B1_Mm SINE Alu 15 126 -21 9 1053 934 151 172 0 chr9 61464973 61465165 -62611007 - URR1B DNA MER1_type 0 225 1 9 1053 962 270 76 33 chr9 61465417 61465784 -62610388 - MLT1B LTR MaLR -2 388 6 9 1053 180 0 0 0 chr9 61466178 61466198 -62609974 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1053 348 240 148 8 chr9 61466651 61466773 -62609399 + MIRb SINE MIR 86 224 -44 9 1053 220 188 0 40 chr9 61467154 61467204 -62608968 + MIRc SINE MIR 114 161 -107 9 1053 577 240 13 19 chr9 61467371 61467528 -62608644 - B4A SINE B4 -126 166 11 9 1053 21 0 0 0 chr9 61468528 61468549 -62607623 + AT_rich Low_complexity Low_complexity 1 21 0 9 1053 222 380 22 7 chr9 61469647 61469785 -62606387 - MIR SINE MIR -44 218 79 9 1053 576 322 37 66 chr9 61470256 61470529 -62605643 - B4 SINE B4 -14 278 14 9 1053 315 274 32 0 chr9 61471287 61471382 -62604790 + MIRc SINE MIR 84 184 -84 9 1053 396 0 0 0 chr9 61471391 61471435 -62604737 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1053 508 295 102 19 chr9 61471601 61471867 -62604305 + B4A SINE B4 3 290 -2 9 1053 427 334 229 10 chr9 61472029 61472422 -62603750 + MLT1H1 LTR MaLR 69 547 -8 9 131 688 167 9 18 chr9 61472572 61472801 -62603371 + (TG)n Simple_repeat Simple_repeat 1 226 0 9 1054 250 294 126 8 chr9 61472803 61472930 -62603242 - L2a LINE L2 -262 3164 3023 9 1054 190 290 29 0 chr9 61473219 61473288 -62602884 - MIRm SINE MIR -130 146 76 9 1054 180 0 0 0 chr9 61473321 61473341 -62602831 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 9 1054 1066 76 7 0 chr9 61473346 61473491 -62602681 - B1_Mus1 SINE Alu -1 147 2 9 1054 956 232 5 10 chr9 61473656 61473861 -62602311 + ID_B1 SINE B4 11 214 -10 9 1054 198 257 252 43 chr9 61474000 61474101 -62602071 - MIRm SINE MIR -147 129 6 9 1054 4329 132 62 53 chr9 61474150 61475098 -62601074 - RMER17B LTR ERVK 0 958 2 9 1054 441 0 0 0 chr9 61475551 61475600 -62600572 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1054 496 289 33 7 chr9 61476475 61476628 -62599544 + RSINE1 SINE B4 4 160 -5 9 1054 373 257 208 0 chr9 61477414 61477558 -62598614 + MTEb LTR MaLR 3 176 -203 9 1054 1970 230 88 84 chr9 61477564 61478220 -62597952 + RMER13A LTR ERVK 1 659 -201 9 1054 662 165 196 24 chr9 61478332 61478500 -62597672 + MTEb LTR MaLR 181 377 -2 9 1054 310 341 129 36 chr9 61478811 61479091 -62597081 - Lx8 LINE L1 -4 7469 7164 9 1054 190 302 16 16 chr9 61480459 61480523 -62595649 + MIRc SINE MIR 38 101 -167 9 1054 1801 173 41 25 chr9 61480868 61481236 -62594936 + ORR1D1 LTR MaLR 1 374 0 9 1054 193 330 19 48 chr9 61481246 61481351 -62594821 - MIRb SINE MIR -117 151 50 9 1054 273 183 0 0 chr9 61481614 61481674 -62594498 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 1054 30 0 0 0 chr9 61482420 61482450 -62593722 + AT_rich Low_complexity Low_complexity 1 30 0 9 1054 1339 196 219 3 chr9 61482877 61483220 -62592952 - MTD LTR MaLR 0 419 3 9 1054 930 245 179 18 chr9 61485300 61485641 -62590531 - MTD LTR MaLR -14 405 10 9 1054 591 71 0 0 chr9 61487584 61487669 -62588503 + (CA)n Simple_repeat Simple_repeat 1 85 0 9 1054 289 291 47 37 chr9 61487852 61487959 -62588213 - RSINE1 SINE B4 0 165 58 9 1054 710 218 233 30 chr9 61488085 61488355 -62587817 + MLT1A0 LTR MaLR 39 363 -2 9 1054 2282 132 36 0 chr9 61489735 61490100 -62586072 - ORR1C1 LTR MaLR 0 378 1 9 1054 293 282 141 79 chr9 61490184 61490361 -62585811 - B4 SINE B4 0 292 105 9 1054 283 188 0 0 chr9 61490375 61490423 -62585749 + ID_B1 SINE B4 176 223 -1 9 1054 765 137 0 0 chr9 61490447 61490578 -62585594 + (GA)n Simple_repeat Simple_repeat 2 132 0 9 1054 207 0 0 0 chr9 61491248 61491271 -62584901 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1054 2599 104 71 0 chr9 61492553 61492946 -62583226 - MTC LTR MaLR 0 421 1 9 1054 242 257 42 14 chr9 61493117 61493188 -62582984 + MER53 DNA hAT 35 107 -86 9 1054 390 42 0 0 chr9 61494164 61494212 -62581960 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1054 227 375 27 0 chr9 61494424 61494536 -62581636 + MIRb SINE MIR 73 187 -81 9 1054 310 294 91 71 chr9 61495072 61495226 -62580946 - L1ME4a LINE L1 -2 6122 5966 9 1054 247 288 93 31 chr9 61495231 61495360 -62580812 - MLT1K LTR MaLR 0 595 459 9 1054 225 333 0 29 chr9 61495471 61495576 -62580596 - MLT1K LTR MaLR -331 264 163 9 1054 950 222 14 19 chr9 61495628 61495844 -62580328 + B3 SINE B2 2 216 0 9 1054 830 117 7 65 chr9 61495873 61496028 -62580144 + B1_Mm SINE Alu 2 147 0 9 1054 330 122 17 42 chr9 61496028 61496039 -62580133 + A-rich Low_complexity Low_complexity 1 11 0 9 1054 516 59 451 0 chr9 61496039 61496141 -62580031 + B1_Mus1 SINE Alu 1 148 0 9 1054 330 122 17 42 chr9 61496141 61496249 -62579923 + A-rich Low_complexity Low_complexity 12 117 0 9 1054 293 299 0 100 chr9 61496949 61497079 -62579093 - PB1D10 SINE Alu 0 117 1 9 1054 183 314 24 56 chr9 61497645 61497770 -62578402 - L2b LINE L2 -115 3260 3140 9 1054 830 294 119 17 chr9 61497896 61498256 -62577916 - MTD LTR MaLR -21 398 2 9 1054 822 254 49 0 chr9 61499451 61499636 -62576536 + ID_B1 SINE B4 18 211 -13 9 1054 292 351 7 29 chr9 61499526 61499664 -62576508 - YREP_Mm Unknown Unknown -1516 296 162 9 1054 279 208 12 49 chr9 61500699 61500780 -62575392 + PB1D10 SINE Alu 40 117 0 1 1054 322 314 38 103 chr9 61501576 61501789 -62574383 - MIR3 SINE MIR -3 205 7 2 1054 1111 265 9 0 chr9 61501826 61502045 -62574127 + ID_B1 SINE B4 1 221 -3 3 1054 516 16 0 0 chr9 61502177 61502238 -62573934 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1054 214 293 0 0 chr9 61502300 61502358 -62573814 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1054 508 117 71 0 chr9 61502371 61502525 -62573647 + (TG)n Simple_repeat Simple_repeat 2 166 0 5 1054 279 132 29 14 chr9 61502564 61502633 -62573539 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1054 630 263 179 20 chr9 61502644 61502896 -62573276 - B4A SINE B4 0 292 1 6 1054 504 146 0 0 chr9 61504024 61504113 -62572059 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 7 1054 231 360 47 23 chr9 61504858 61504986 -62571186 + MLT1J LTR MaLR 205 335 -177 8 1054 843 226 60 92 chr9 61504990 61505273 -62570899 + B4A SINE B4 2 275 -17 9 1054 333 0 0 0 chr9 61505276 61505313 -62570859 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1054 233 186 0 0 chr9 61505334 61505377 -62570795 + MLT1J LTR MaLR 325 367 -145 8 1054 191 149 42 21 chr9 61506075 61506123 -62570049 + L3 LINE CR1 4295 4343 -146 1 1054 306 0 0 0 chr9 61506502 61506536 -62569636 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1054 459 0 0 0 chr9 61506536 61506586 -62569586 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1054 371 295 49 8 chr9 61506892 61507015 -62569157 + MIR SINE MIR 19 146 -116 1 1054 246 62 0 0 chr9 61507175 61507207 -62568965 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1 1054 504 117 0 0 chr9 61507947 61508024 -62568148 + (GGA)n Simple_repeat Simple_repeat 1 77 0 1 1054 682 328 100 28 chr9 61508459 61509046 -62567126 + L1M3 LINE L1 2195 2837 -3303 1 1054 796 214 14 0 chr9 61509070 61509210 -62566962 + B1_Mur4 SINE Alu 1 142 -8 1 1054 349 237 18 0 chr9 61509214 61509257 -62566915 + polypurine Low_complexity Low_complexity 2 44 0 1 1054 1296 84 0 0 chr9 61509257 61509436 -62566736 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 2 1054 349 237 18 0 chr9 61509436 61509506 -62566666 + polypurine Low_complexity Low_complexity 45 116 0 2 1054 25 0 0 0 chr9 61509578 61509603 -62566569 + AT_rich Low_complexity Low_complexity 1 25 0 2 1054 683 270 6 25 chr9 61509670 61509833 -62566339 + RSINE1 SINE B4 4 163 -2 2 1054 384 308 154 30 chr9 61509900 61510295 -62565877 + L1M3 LINE L1 3014 3457 -2683 1 1054 425 333 60 34 chr9 61510524 61510822 -62565350 + MT2A LTR ERVL 72 377 -156 2 1054 301 237 198 16 chr9 61510831 61510951 -62565221 + L1M3 LINE L1 4289 4445 -1695 1 1054 793 129 68 61 chr9 61510951 61511099 -62565073 + B1_Mur3 SINE Alu 1 149 0 2 1054 407 207 79 8 chr9 61511099 61511235 -62564937 + L1M3 LINE L1 4446 4595 -1548 1 1054 291 284 62 0 chr9 61511243 61511324 -62564848 + MLT1A0 LTR MaLR 1 86 -279 2 1054 470 248 38 9 chr9 61511407 61511513 -62564659 - RSINE1 SINE B4 -22 143 35 2 1054 312 192 30 0 chr9 61511513 61511612 -62564560 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 2 1054 199 326 70 0 chr9 61511614 61511700 -62564472 - L2b LINE L2 0 3375 3284 2 1054 658 172 13 0 chr9 61511708 61511865 -62564307 + (TGGA)n Simple_repeat Simple_repeat 3 161 0 3 1054 402 21 0 0 chr9 61512803 61512850 -62563322 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1054 852 254 45 10 chr9 61512870 61513069 -62563103 - B4A SINE B4 -3 289 84 3 1054 183 188 0 0 chr9 61513245 61513293 -62562879 + (CAT)n Simple_repeat Simple_repeat 2 49 0 3 1054 229 267 52 87 chr9 61513316 61513431 -62562741 + L2b LINE L2 3235 3345 -30 3 1054 858 144 0 0 chr9 61514374 61514554 -62561618 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1054 756 264 99 85 chr9 61514580 61514862 -62561310 - B4 SINE B4 -4 288 3 3 1054 252 122 0 0 chr9 61515909 61515950 -62560222 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1054 322 208 46 44 chr9 61515951 61516029 -62560143 - B3 SINE B2 -46 152 74 3 1054 390 195 0 118 chr9 61517067 61517160 -62559012 + ID_B1 SINE B4 94 175 -49 3 1054 326 292 0 103 chr9 61517160 61517174 -62558998 + PB1D10 SINE Alu 13 108 -9 4 1054 204 392 3 0 chr9 61518696 61518794 -62557378 - MIRb SINE MIR -38 230 128 4 1054 189 147 0 0 chr9 61518904 61518938 -62557234 + (GGA)n Simple_repeat Simple_repeat 2 35 0 4 1054 286 309 74 0 chr9 61519219 61519381 -62556791 - HAL1 LINE L1 -833 1674 1501 4 1054 238 170 43 0 chr9 61519385 61519432 -62556740 - HAL1 LINE L1 -893 1614 1566 4 1054 486 216 10 0 chr9 61519478 61519575 -62556597 - ID_B1 SINE B4 -4 220 123 4 1054 180 0 0 0 chr9 61519655 61519675 -62556497 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 1054 358 276 123 48 chr9 61519687 61519996 -62556176 - HAL1 LINE L1 -1048 1459 1128 4 1054 483 179 0 0 chr9 61519997 61520103 -62556069 + (TATG)n Simple_repeat Simple_repeat 1 106 0 4 1054 534 114 0 0 chr9 61520121 61520209 -62555963 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1054 740 242 150 27 chr9 61520224 61520411 -62555761 - ID_B1 SINE B4 -14 210 1 4 1054 297 250 17 0 chr9 61520418 61520478 -62555694 - ID_B1 SINE B4 -5 219 159 5 1054 277 354 87 33 chr9 61520494 61520678 -62555494 - MIR SINE MIR -38 224 31 5 1054 204 303 89 27 chr9 61520685 61520797 -62555375 + MIR SINE MIR 101 219 -43 5 1054 262 208 0 70 chr9 61520853 61520910 -62555262 - RSINE1 SINE B4 -4 161 109 5 1054 441 300 128 104 chr9 61522521 61522897 -62553275 + MLT1E1A LTR MaLR 288 672 -8 5 1054 654 286 68 0 chr9 61522933 61523139 -62553033 + ID_B1 SINE B4 1 220 -4 5 1054 246 239 182 0 chr9 61523946 61524034 -62552138 + MLT1K LTR MaLR 465 568 -27 5 1054 529 144 22 0 chr9 61524428 61524518 -62551654 - ID_B1 SINE B4 -2 222 131 5 1054 393 228 39 123 chr9 61524518 61524558 -62551614 - B1_Mur1 SINE Alu -2 147 29 5 1054 24 0 0 0 chr9 61524804 61524828 -62551344 + AT_rich Low_complexity Low_complexity 1 24 0 5 1054 279 0 0 0 chr9 61527535 61527566 -62548606 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1054 468 0 0 0 chr9 61527566 61527617 -62548555 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1054 228 306 92 53 chr9 61528099 61528226 -62547946 + RSINE1 SINE B4 3 124 -41 6 1054 360 0 0 0 chr9 61528226 61528266 -62547906 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1054 228 306 92 53 chr9 61528266 61528290 -62547882 + RSINE1 SINE B4 125 159 -6 6 1054 181 300 68 29 chr9 61528625 61528728 -62547444 + MIR3 SINE MIR 56 162 -46 6 1054 219 136 0 43 chr9 61529022 61529068 -62547104 + A-rich Low_complexity Low_complexity 1 44 0 6 1054 355 52 17 17 chr9 61529158 61529217 -62546955 + (TGGGGG)n Simple_repeat Simple_repeat 2 60 0 6 1054 494 122 9 0 chr9 61529735 61529842 -62546330 + (TC)n Simple_repeat Simple_repeat 1 108 0 6 1054 420 20 0 0 chr9 61529842 61529891 -62546281 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1054 306 0 0 0 chr9 61529954 61529988 -62546184 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1054 264 274 47 23 chr9 61530308 61530394 -62545778 + MIR3 SINE MIR 95 182 -26 7 1054 772 229 94 16 chr9 61532024 61532215 -62543957 - ID_B1 SINE B4 -14 210 5 7 1054 1572 198 82 19 chr9 61532517 61532892 -62543280 + MT2A LTR ERVL 13 538 -63 7 1054 315 0 0 0 chr9 61532892 61532927 -62543245 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1054 818 286 53 56 chr9 61532927 61532980 -62543192 + MT2A LTR ERVL 539 600 -1 7 1054 1229 206 140 22 chr9 61532982 61533260 -62542912 - MTE2a LTR MaLR -68 311 1 7 1054 686 310 40 66 chr9 61533860 61533906 -62542266 - MLT1D LTR MaLR -13 492 453 7 1054 486 284 152 39 chr9 61533906 61534162 -62542010 + B4 SINE B4 4 288 -4 7 1054 686 310 40 66 chr9 61534162 61534388 -62541784 - MLT1D LTR MaLR -53 452 227 7 1054 556 241 9 0 chr9 61534474 61534586 -62541586 + B4 SINE B4 2 114 -178 7 1054 245 311 14 0 chr9 61534649 61534723 -62541449 - MLT1D LTR MaLR -324 181 107 7 1054 1049 251 32 32 chr9 61535159 61535439 -62540733 - B4A SINE B4 -11 281 2 7 1054 567 301 92 63 chr9 61536030 61536314 -62539858 + B4 SINE B4 1 292 0 7 1054 729 190 0 0 chr9 61536325 61536877 -62539295 + (CA)n Simple_repeat Simple_repeat 1 552 0 8 1054 808 233 80 42 chr9 61538143 61538407 -62537765 + B4 SINE B4 1 274 -18 8 1054 306 0 0 0 chr9 61538446 61538480 -62537692 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1054 286 277 64 71 chr9 61538614 61538754 -62537418 + B1F2 SINE Alu 3 141 -8 8 1054 216 271 0 17 chr9 61538860 61538920 -62537252 + MIR SINE MIR 59 117 -145 8 1054 691 198 0 0 chr9 61538955 61539066 -62537106 + PB1D10 SINE Alu 2 112 -5 8 1054 723 252 7 20 chr9 61539822 61539972 -62536200 + RSINE1 SINE B4 4 151 -14 8 1054 297 0 0 0 chr9 61540486 61540519 -62535653 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1054 609 310 13 0 chr9 61540534 61540692 -62535480 - RSINE1 SINE B4 -4 161 2 8 1054 188 322 81 16 chr9 61540692 61540815 -62535357 - L2 LINE L2 -600 2819 2689 8 1054 190 320 82 10 chr9 61541237 61541335 -62534837 - MIRb SINE MIR -66 202 98 9 1054 866 188 0 0 chr9 61541380 61541518 -62534654 + B1_Mur1 SINE Alu 2 139 -10 9 1054 415 278 116 23 chr9 61541673 61541802 -62534370 + B4A SINE B4 2 142 -150 9 1054 510 298 36 24 chr9 61541815 61541980 -62534192 + B4A SINE B4 64 230 -62 9 1054 254 143 20 0 chr9 61542063 61542112 -62534060 + GA-rich Low_complexity Low_complexity 4 53 0 9 1054 1293 126 87 0 chr9 61542684 61542890 -62533282 + URR1A DNA MER1_type 1 224 -2 9 1054 312 246 251 9 chr9 61543120 61543228 -62532944 - MIR SINE MIR -123 153 21 9 1054 393 136 0 0 chr9 61544105 61544171 -62532001 + (A)n Simple_repeat Simple_repeat 1 66 0 9 1054 715 262 91 26 chr9 61544205 61544430 -62531742 - MTD LTR MaLR -147 260 18 9 1054 1480 209 11 25 chr9 61545243 61545260 -62530912 + ORSL-2b DNA Tip100 76 92 -416 9 1054 396 0 0 0 chr9 61545260 61545304 -62530868 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1054 1480 209 11 25 chr9 61545304 61545639 -62530533 + ORSL-2b DNA Tip100 93 423 -85 9 1054 546 16 0 0 chr9 61546164 61546227 -62529945 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1054 501 309 12 12 chr9 61546322 61546489 -62529683 + L1M5 LINE L1 5652 5818 -306 1 1054 614 268 20 53 chr9 61547487 61547637 -62528535 - B4 SINE B4 -126 166 22 1 1054 372 320 0 8 chr9 61548797 61548923 -62527249 + CT-rich Low_complexity Low_complexity 3 127 0 1 1054 270 319 43 17 chr9 61548952 61549067 -62527105 - MIRb SINE MIR -112 156 39 1 1054 905 236 27 93 chr9 61549177 61549351 -62526821 + B4A SINE B4 53 217 -75 1 1054 657 240 79 35 chr9 61549351 61549554 -62526618 + B3 SINE B2 3 214 -2 1 1054 905 236 27 93 chr9 61549554 61549570 -62526602 + B4A SINE B4 218 225 -67 1 1054 1418 53 26 26 chr9 61549570 61549763 -62526409 + B2_Mm2 SINE B2 1 193 -2 1 1054 905 236 27 93 chr9 61549763 61549828 -62526344 + B4A SINE B4 226 292 0 1 1054 213 224 0 0 chr9 61549828 61549886 -62526286 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1054 214 26 25 50 chr9 61550983 61551023 -62525149 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1054 437 345 117 60 chr9 61551406 61551705 -62524467 + ORR1E LTR MaLR 9 324 -35 1 1054 414 0 0 0 chr9 61551724 61551770 -62524402 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1054 944 199 87 0 chr9 61551903 61552099 -62524073 + B3 SINE B2 2 214 -2 1 1054 270 0 0 0 chr9 61552222 61552252 -62523920 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1054 995 115 0 0 chr9 61552252 61552382 -62523790 - B1_Mus2 SINE Alu -17 130 1 1 1054 550 290 20 7 chr9 61552383 61552529 -62523643 - B1F SINE Alu -1 148 1 1 1054 227 337 0 3 chr9 61552539 61552623 -62523549 + MIRc SINE MIR 30 108 -100 1 1054 560 276 37 0 chr9 61553121 61553255 -62522917 - ID_B1 SINE B4 -5 219 81 1 1054 294 95 0 0 chr9 61553265 61553307 -62522865 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1054 1596 267 26 29 chr9 61553873 61554251 -62521921 - MTE2a LTR MaLR -2 377 1 1 1054 1119 117 112 0 chr9 61554477 61554665 -62521507 - URR1A DNA MER1_type 0 226 18 1 1054 200 342 66 46 chr9 61555824 61556020 -62520152 - L3 LINE CR1 -603 3886 3687 1 1054 184 366 138 0 chr9 61556086 61556209 -62519963 + MIRm SINE MIR 4 143 -133 1 1054 200 287 176 52 chr9 61556310 61556446 -62519726 - L3 LINE CR1 -909 3580 3428 1 1054 527 146 0 0 chr9 61556497 61556586 -62519586 - RLTR11B LTR ERVK -362 91 3 1 1054 408 318 23 6 chr9 61557722 61557893 -62518279 + (CATA)n Simple_repeat Simple_repeat 4 177 0 1 1054 237 211 41 21 chr9 61557903 61558000 -62518172 + Lx9 LINE L1 7419 7517 -127 1 1054 192 257 0 0 chr9 61558011 61558081 -62518091 + (CATA)n Simple_repeat Simple_repeat 2 71 0 1 1054 240 260 0 26 chr9 61558108 61558262 -62517910 + (CATATA)n Simple_repeat Simple_repeat 1 150 0 1 1054 209 303 12 50 chr9 61558427 61558507 -62517665 - L2b LINE L2 -23 3352 3276 1 1054 194 352 88 0 chr9 61558753 61558844 -62517328 - L2b LINE L2 -173 3202 3104 1 1054 284 288 110 16 chr9 61559534 61559672 -62516500 - MIR SINE MIR -75 193 35 1 1054 314 317 23 68 chr9 61560571 61560703 -62515469 + MLT1H LTR MaLR 1 126 -423 1 1054 295 265 48 12 chr9 61560701 61560785 -62515387 + MLT1A0 LTR MaLR 21 107 -258 1 1054 963 274 81 15 chr9 61560832 61561091 -62515081 + B4A SINE B4 2 277 -15 1 1054 420 97 0 0 chr9 61561092 61561154 -62515018 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1054 204 102 40 20 chr9 61561209 61561259 -62514913 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1054 565 337 39 0 chr9 61561262 61561440 -62514732 + MLT1A0 LTR MaLR 181 365 0 1 1054 237 265 84 42 chr9 61561442 61561513 -62514659 + MLT1H2 LTR MaLR 70 143 -346 1 1054 264 365 9 9 chr9 61563220 61563336 -62512836 + (TATG)n Simple_repeat Simple_repeat 1 116 0 1 1054 828 327 5 0 chr9 61563356 61563555 -62512617 - B4A SINE B4 -81 211 12 1 1054 398 323 24 93 chr9 61564108 61564350 -62511822 + B4A SINE B4 6 230 -62 1 1054 499 292 23 85 chr9 61564350 61564526 -62511646 + B3A SINE B2 2 166 -32 1 1054 321 26 0 0 chr9 61564526 61564564 -62511608 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1054 315 0 0 0 chr9 61564564 61564598 -62511574 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1054 506 90 0 22 chr9 61565719 61565810 -62510362 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 1 1054 1402 90 104 5 chr9 61565995 61566206 -62509966 - MTC LTR MaLR -189 232 1 1 1054 679 238 41 14 chr9 61567052 61567197 -62508975 - B1F SINE Alu 0 149 1 1 1054 1151 231 204 120 chr9 61567224 61567574 -62508598 - MTD LTR MaLR 0 379 1 1 1054 663 269 40 57 chr9 61570134 61570285 -62505887 + B4 SINE B4 1 141 -151 1 1054 531 0 0 0 chr9 61570285 61570344 -62505828 + (CCCTAA)n Simple_repeat Simple_repeat 6 64 0 1 1054 663 269 40 57 chr9 61570344 61570369 -62505803 + B4 SINE B4 142 173 -119 1 1054 217 327 92 36 chr9 61570379 61570657 -62505515 - L2c LINE L2 -191 3235 2951 1 1054 197 252 157 64 chr9 61570968 61571108 -62505064 - L2c LINE L2 -601 2818 2666 1 1054 312 299 73 15 chr9 61571133 61571337 -62504835 - L2c LINE L2 -723 2696 2481 1 1054 1263 48 0 0 chr9 61571640 61571787 -62504385 - B1_Mus2 SINE Alu 0 147 1 1 1054 186 71 0 0 chr9 61571808 61571836 -62504336 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1054 366 23 0 0 chr9 61571927 61571970 -62504202 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1054 540 0 0 0 chr9 61571970 61572029 -62504143 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1054 501 230 176 7 chr9 61572029 61572165 -62504007 - B3A SINE B2 -38 160 2 1 1054 475 107 24 0 chr9 61573198 61573282 -62502890 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 1054 349 157 263 53 chr9 61573287 61573401 -62502771 - B4 SINE B4 -37 255 118 1 1054 35 24 0 0 chr9 61573685 61573727 -62502445 + AT_rich Low_complexity Low_complexity 1 42 0 1 1054 366 302 103 57 chr9 61574003 61574266 -62501906 + B4A SINE B4 2 276 -16 1 1054 435 19 0 0 chr9 61574343 61574395 -62501777 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1054 621 231 115 0 chr9 61575986 61576116 -62500056 + RSINE1 SINE B4 2 146 -19 1 1054 949 225 33 19 chr9 61576455 61576668 -62499504 + B4 SINE B4 1 216 -76 1 1054 315 122 0 0 chr9 61576668 61576717 -62499455 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1054 360 0 0 0 chr9 61576717 61576756 -62499416 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1054 249 271 196 21 chr9 61576779 61576922 -62499250 - MER46C DNA MER2_type -90 248 81 1 1054 921 249 35 0 chr9 61577109 61577306 -62498866 - B3 SINE B2 -10 206 3 1 1054 520 243 6 125 chr9 61577318 61577478 -62498694 - B1F1 SINE Alu -8 141 1 1 1054 569 236 24 0 chr9 61577757 61577884 -62498288 - B1F SINE Alu -19 130 1 1 1054 242 284 11 33 chr9 61578137 61578228 -62497944 - MLT1F LTR MaLR 0 548 460 1 1054 280 315 178 7 chr9 61578391 61578672 -62497500 - MLT1F-int LTR MaLR -1160 329 1 1 1054 514 276 60 35 chr9 61578707 61578906 -62497266 - MLT1F LTR MaLR -38 510 307 1 1054 190 377 7 14 chr9 61579165 61579305 -62496867 - L2b LINE L2 -297 3078 2940 1 1054 415 48 0 31 chr9 61579305 61579342 -62496830 + (GGGTG)n Simple_repeat Simple_repeat 1 37 0 1 1054 1545 44 0 0 chr9 61579342 61579522 -62496650 + (GGATG)n Simple_repeat Simple_repeat 1 184 -186 1 1054 415 48 0 31 chr9 61579522 61579532 -62496640 + (GGGTG)n Simple_repeat Simple_repeat 1 10 0 1 1054 1545 44 0 0 chr9 61579532 61579712 -62496460 + (GGATG)n Simple_repeat Simple_repeat 185 370 0 1 1054 415 48 0 31 chr9 61579712 61579727 -62496445 + (GGGTG)n Simple_repeat Simple_repeat 1 15 0 1 1054 1620 12 0 0 chr9 61579727 61580234 -62495938 + (GGATG)n Simple_repeat Simple_repeat 1 507 0 1 1054 1238 169 17 52 chr9 61580823 61581054 -62495118 + URR1B DNA MER1_type 3 225 0 1 1054 202 132 26 0 chr9 61581274 61581312 -62494860 + (CAGAG)n Simple_repeat Simple_repeat 5 43 0 1 1054 290 312 62 0 chr9 61581367 61581447 -62494725 - MER96 DNA hAT -82 93 9 1 1054 599 209 50 2 chr9 61581743 61581917 -62494255 + B4A SINE B4 20 230 -62 1 1054 499 229 41 77 chr9 61581917 61582087 -62494085 + RSINE1 SINE B4 2 165 0 1 1054 451 115 64 14 chr9 61582091 61582232 -62493940 + (CA)n Simple_repeat Simple_repeat 1 148 0 1 1054 601 118 50 17 chr9 61582258 61582504 -62493668 + (CA)n Simple_repeat Simple_repeat 1 254 0 1 1054 301 179 179 0 chr9 61582504 61582588 -62493584 + HAL1-3A_ME LINE L1 1977 2075 -783 1 1054 183 204 0 0 chr9 61582628 61582672 -62493500 + (CATA)n Simple_repeat Simple_repeat 4 47 0 1 1054 229 346 7 122 chr9 61583394 61583542 -62492630 - B4A SINE B4 -161 131 1 1 1054 515 295 50 0 chr9 61583552 61583691 -62492481 - B1F1 SINE Alu -2 147 2 1 1054 233 326 126 35 chr9 61583573 61583716 -62492456 - RMER6C LTR ERVK -170 520 365 1 1054 455 178 9 47 chr9 61583997 61584103 -62492069 - ORR1E LTR MaLR -257 102 1 1 1054 977 170 17 69 chr9 61584136 61584359 -62491813 + B2_Mm2 SINE B2 1 214 -2 1 1054 23 33 0 0 chr9 61584359 61584389 -62491783 + AT_rich Low_complexity Low_complexity 1 30 0 1 1054 508 269 6 114 chr9 61584710 61584886 -62491286 - RSINE1 SINE B4 -6 159 3 1 1054 226 163 0 109 chr9 61585058 61585113 -62491059 - L3 LINE CR1 -2365 2124 2076 1 1054 232 132 14 29 chr9 61585160 61585230 -62490942 + (CAGAGA)n Simple_repeat Simple_repeat 3 71 0 1 1054 211 104 62 0 chr9 61585371 61585419 -62490753 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1054 964 235 127 8 chr9 61585492 61585737 -62490435 + B4 SINE B4 15 288 -4 1 1054 1594 168 238 79 chr9 61586178 61586202 -62489970 - MT2A LTR ERVL -2 531 508 1 1054 356 59 20 0 chr9 61586202 61586253 -62489919 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1054 1594 168 238 79 chr9 61586253 61586686 -62489486 - MT2A LTR ERVL -26 507 3 1 1054 1230 69 46 0 chr9 61586732 61586906 -62489266 - L1Md_T LINE L1 0 6582 6401 1 1054 701 215 85 0 chr9 61586906 61587031 -62489141 - ID_B1 SINE B4 -3 221 86 1 1054 566 308 108 0 chr9 61587031 61587226 -62488946 - MER20 DNA MER1_type -3 216 1 1 1054 342 0 0 0 chr9 61587494 61587532 -62488640 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1054 268 250 0 48 chr9 61587745 61587808 -62488364 - MLT1I LTR MaLR -1 410 351 2 1054 297 293 141 73 chr9 61588273 61588389 -62487783 + B3A SINE B2 3 135 -63 2 1054 1266 109 5 20 chr9 61588389 61588585 -62487587 - B2_Mm2 SINE B2 -1 194 2 2 1054 297 293 141 73 chr9 61588585 61588608 -62487564 + B3A SINE B2 136 158 -40 2 1054 306 0 0 0 chr9 61588608 61588642 -62487530 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1054 198 0 0 0 chr9 61588642 61588663 -62487509 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1054 342 0 0 0 chr9 61588663 61588700 -62487472 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1054 297 293 141 73 chr9 61588700 61588734 -62487438 + B3A SINE B2 159 189 -9 2 1054 864 276 50 10 chr9 61588789 61588987 -62487185 - ID_B1 SINE B4 -7 217 12 2 1054 443 221 0 0 chr9 61588988 61589065 -62487107 + ID_B1 SINE B4 127 203 -21 2 1054 2349 163 12 21 chr9 61589574 61589995 -62486177 - MTC LTR MaLR -4 417 1 2 1054 347 283 63 32 chr9 61590708 61590803 -62485369 + B4A SINE B4 5 102 -190 2 1054 222 105 0 0 chr9 61591189 61591227 -62484945 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 2 1054 927 206 20 64 chr9 61592111 61592313 -62483859 + B3A SINE B2 6 198 0 2 1054 523 311 55 11 chr9 61592327 61592509 -62483663 + B4 SINE B4 79 268 -24 2 1054 366 61 0 0 chr9 61592513 61592562 -62483610 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1054 183 80 0 0 chr9 61592625 61592650 -62483522 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1054 318 50 0 0 chr9 61592709 61592749 -62483423 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2 1054 239 246 18 0 chr9 61592758 61592815 -62483357 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1054 180 259 165 66 chr9 61593781 61593872 -62482300 - MIRb SINE MIR -36 232 133 2 1054 370 313 101 13 chr9 61595306 61595455 -62480717 + RSINE1 SINE B4 2 163 -2 2 1054 193 39 77 19 chr9 61595483 61595535 -62480637 + (TTAA)n Simple_repeat Simple_repeat 2 56 0 2 1054 730 315 60 41 chr9 61595874 61596142 -62480030 + B4A SINE B4 2 274 -18 2 1054 324 360 25 36 chr9 61596796 61596992 -62479180 - MIRb SINE MIR -1 267 74 2 1054 366 23 0 0 chr9 61596998 61597041 -62479131 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1054 2919 159 15 6 chr9 61597327 61597846 -62478326 + RLTR28 LTR ERVL 1 524 0 2 1054 535 246 140 49 chr9 61597965 61598361 -62477811 + L1MA4 LINE L1 5127 5543 -757 2 1054 2420 172 100 16 chr9 61598365 61598855 -62477317 + RMER15 LTR ERVL 3 533 -42 2 1054 444 306 140 35 chr9 61598973 61599173 -62476999 + RMER21B LTR ERV1 347 567 -275 2 1054 1045 284 49 62 chr9 61599285 61599380 -62476792 + L1MA4 LINE L1 5541 5650 -650 2 1054 3439 33 0 8 chr9 61599380 61599779 -62476393 + MTA_Mm LTR MaLR 1 396 0 2 1054 1045 284 49 62 chr9 61599779 61600089 -62476083 + L1MA4 LINE L1 5651 5941 -359 2 1054 575 81 12 0 chr9 61600104 61600190 -62475982 + (CATA)n Simple_repeat Simple_repeat 2 88 0 2 1054 325 272 12 36 chr9 61600203 61600287 -62475885 + RSINE1 SINE B4 41 122 -43 2 1054 221 232 14 0 chr9 61600483 61600552 -62475620 + GA-rich Low_complexity Low_complexity 2 71 0 2 1054 215 280 26 26 chr9 61600659 61600736 -62475436 + MIRb SINE MIR 95 171 -97 2 1054 243 0 0 0 chr9 61601162 61601189 -62474983 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1054 282 253 120 16 chr9 61602011 61602138 -62474034 + MIR SINE MIR 21 149 -119 2 1054 532 0 0 29 chr9 61602248 61602318 -62473854 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1054 1160 237 8 31 chr9 61602381 61602642 -62473530 - B4A SINE B4 -37 255 1 2 1054 653 194 7 0 chr9 61602915 61603070 -62473102 + (TG)n Simple_repeat Simple_repeat 1 156 0 2 1055 506 236 32 16 chr9 61605179 61605304 -62470868 + MIRb SINE MIR 22 148 -120 2 1055 567 222 208 45 chr9 61605699 61605943 -62470229 + B4 SINE B4 8 292 0 2 1055 641 107 19 0 chr9 61605946 61606049 -62470123 + (GGAGA)n Simple_repeat Simple_repeat 3 107 0 2 1055 223 295 55 47 chr9 61606117 61606245 -62469927 + L2 LINE L2 487 615 -2804 2 1055 207 0 0 0 chr9 61606760 61606783 -62469389 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1055 422 255 0 7 chr9 61606783 61606921 -62469251 + (TA)n Simple_repeat Simple_repeat 2 138 0 2 1055 399 222 89 0 chr9 61607044 61607134 -62469038 - B4 SINE B4 -192 100 3 2 1055 838 282 73 29 chr9 61608115 61608389 -62467783 + B4A SINE B4 7 292 0 2 1055 21 0 0 0 chr9 61609322 61609343 -62466829 + AT_rich Low_complexity Low_complexity 1 21 0 2 1055 668 279 0 7 chr9 61609362 61609510 -62466662 - RSINE1 SINE B4 -16 149 3 2 1055 317 293 9 69 chr9 61610015 61610130 -62466042 - MLT1A1 LTR MaLR -1 504 304 2 1055 24 67 0 0 chr9 61611953 61611998 -62464174 + AT_rich Low_complexity Low_complexity 1 45 0 2 1055 437 267 31 104 chr9 61612005 61612168 -62464004 - RSINE1 SINE B4 -13 152 2 2 1055 262 207 17 49 chr9 61612287 61612362 -62463810 - B2_Mm2 SINE B2 -145 71 2 2 1055 369 164 0 0 chr9 61612446 61612519 -62463653 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1055 327 265 7 0 chr9 61612545 61612823 -62463349 + (TG)n Simple_repeat Simple_repeat 1 280 0 2 1055 961 219 118 37 chr9 61612828 61613098 -62463074 - B4A SINE B4 0 292 1 2 1055 197 132 0 26 chr9 61613439 61613478 -62462694 + GA-rich Low_complexity Low_complexity 3 40 0 2 1055 748 297 90 41 chr9 61613699 61613966 -62462206 + B4A SINE B4 1 280 -12 2 1055 513 58 0 0 chr9 61613973 61614042 -62462130 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1055 809 265 131 22 chr9 61614046 61614536 -62461636 + L1MDa LINE L1 1074 1616 -5017 2 1055 880 218 19 83 chr9 61614558 61614763 -62461409 + B3A SINE B2 1 192 -6 2 1055 468 280 124 18 chr9 61614851 61615069 -62461103 + L1MDa LINE L1 2114 2354 -4279 2 1055 542 246 95 0 chr9 61615095 61615221 -62460951 + B4A SINE B4 1 138 -154 2 1055 272 347 0 14 chr9 61615265 61615338 -62460834 + RSINE1 SINE B4 3 74 -91 2 1055 259 226 103 63 chr9 61616474 61616649 -62459523 + L1MDa LINE L1 5408 5589 -948 2 1055 273 258 0 0 chr9 61616660 61616722 -62459450 + L1MDa LINE L1 6149 6210 -540 2 1055 907 250 6 6 chr9 61616888 61617069 -62459103 + B3A SINE B2 2 182 -16 2 1055 338 268 48 12 chr9 61617071 61617154 -62459018 + HAL1-3A_ME LINE L1 1981 2066 -792 2 1055 180 271 0 63 chr9 61617467 61617530 -62458642 - L2 LINE L2 -999 2420 2362 2 1055 383 323 12 23 chr9 61617765 61617936 -62458236 + CT-rich Low_complexity Low_complexity 2 170 0 2 1055 254 231 68 88 chr9 61618402 61618549 -62457623 + MIRc SINE MIR 33 176 -92 2 1055 336 294 134 39 chr9 61618558 61618792 -62457380 + RSINE1 SINE B4 1 270 -22 2 1055 231 146 0 0 chr9 61618889 61618930 -62457242 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1055 417 272 4 4 chr9 61618930 61619175 -62456997 + (CA)n Simple_repeat Simple_repeat 1 245 0 2 1055 348 216 6 35 chr9 61619190 61619363 -62456809 + (CATA)n Simple_repeat Simple_repeat 3 170 0 2 1055 499 260 10 0 chr9 61619940 61620044 -62456128 + ID_B1 SINE B4 1 105 -119 2 1055 182 224 174 41 chr9 61620498 61620619 -62455553 - L3 LINE CR1 -2449 2040 1904 2 1055 405 240 170 0 chr9 61621123 61621223 -62454949 + ID_B1 SINE B4 1 117 -107 2 1055 324 328 8 8 chr9 61621260 61621377 -62454795 + GA-rich Low_complexity Low_complexity 4 120 0 2 1055 7719 42 13 5 chr9 61622069 61623003 -62453169 + L1Md_F2 LINE L1 5642 6582 0 2 1055 782 278 11 27 chr9 61623583 61623768 -62452404 - B3 SINE B2 -30 186 5 2 1055 514 260 16 24 chr9 61623776 61623902 -62452270 - ID_B1 SINE B4 -2 222 98 2 1055 1636 202 60 37 chr9 61624106 61624455 -62451717 - ORR1C2 LTR MaLR -27 357 1 2 1055 926 197 11 43 chr9 61624455 61624533 -62451639 + ID_B1 SINE B4 37 108 -116 2 1055 4168 71 40 20 chr9 61624533 61625082 -62451090 + LTRIS2 LTR ERV1 5 564 0 2 1055 926 215 24 51 chr9 61625082 61625214 -62450958 + ID_B1 SINE B4 109 246 -46 2 1055 347 299 116 7 chr9 61625356 61625494 -62450678 - HAL1-3A_ME LINE L1 -420 2438 2286 2 1055 219 240 0 20 chr9 61625536 61625587 -62450585 + CT-rich Low_complexity Low_complexity 2 51 0 2 1055 549 221 11 6 chr9 61625912 61626089 -62450083 + CT-rich Low_complexity Low_complexity 3 180 0 2 1055 408 340 92 81 chr9 61628134 61628770 -62447402 + LTR85a LTR Gypsy? 21 700 -2 2 1055 236 295 0 37 chr9 61628974 61629055 -62447117 + B4A SINE B4 1 78 -214 2 1055 719 214 8 8 chr9 61629061 61629193 -62446979 + B1F2 SINE Alu 3 134 -15 2 1055 321 172 0 0 chr9 61629201 61629265 -62446907 + GA-rich Low_complexity Low_complexity 3 66 0 2 1055 288 0 0 0 chr9 61629502 61629534 -62446638 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1055 295 245 0 0 chr9 61629584 61629637 -62446535 - B4A SINE B4 -22 270 218 2 1055 1349 298 85 12 chr9 61629667 61630255 -62445917 - Lx8 LINE L1 -29 7444 6814 2 1055 701 245 143 15 chr9 61630278 61630481 -62445691 - B4A SINE B4 -62 230 2 2 1055 212 200 93 112 chr9 61631498 61631579 -62444593 - MIRc SINE MIR -75 187 111 2 1055 1777 170 41 134 chr9 61631579 61631691 -62444481 - MTD LTR MaLR 0 419 303 2 1055 1323 96 32 5 chr9 61631691 61631880 -62444292 + B2_Mm2 SINE B2 2 195 0 2 1055 1777 170 41 134 chr9 61631880 61632229 -62443943 - MTD LTR MaLR -117 302 1 2 1055 212 288 58 70 chr9 61632229 61632254 -62443918 - MIRc SINE MIR -158 110 87 2 1055 233 125 196 0 chr9 61632593 61632633 -62443539 + B4 SINE B4 2 52 -240 2 1055 318 288 0 0 chr9 61632633 61632699 -62443473 + MTE2b LTR MaLR 1 66 -313 2 1055 348 24 0 0 chr9 61633092 61633133 -62443039 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 2 1055 330 250 98 20 chr9 61633135 61633237 -62442935 - PB1D10 SINE Alu -7 110 1 2 1055 395 296 67 22 chr9 61633237 61633300 -62442872 - ID SINE ID -140 84 16 2 1055 606 234 27 27 chr9 61633628 61633777 -62442395 + B1F SINE Alu 1 149 0 2 1055 415 250 152 0 chr9 61634818 61634910 -62441262 + RSINE1 SINE B4 4 109 -56 2 1055 515 197 13 19 chr9 61634910 61635065 -62441107 + CT-rich Low_complexity Low_complexity 3 156 0 2 1055 401 238 8 151 chr9 61635550 61635669 -62440503 + B4 SINE B4 2 103 -189 2 1055 254 87 22 0 chr9 61635727 61635773 -62440399 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 2 1055 368 272 35 17 chr9 61635949 61636065 -62440107 + MER5A1 DNA MER1_type 1 118 -48 3 1055 252 330 43 0 chr9 61636193 61636287 -62439885 - MER117 DNA MER1_type -3 194 97 3 1055 881 277 60 8 chr9 61636555 61636806 -62439366 + B4A SINE B4 26 289 -3 3 1055 527 183 29 9 chr9 61637605 61637710 -62438462 + PB1D10 SINE Alu 1 107 -10 3 1055 605 136 39 10 chr9 61637808 61637912 -62438260 + B1_Mm SINE Alu 41 147 0 3 1055 233 273 121 24 chr9 61638057 61638181 -62437991 + MIRc SINE MIR 115 250 -18 3 1055 364 328 0 27 chr9 61638386 61638571 -62437601 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1055 532 277 47 7 chr9 61638596 61638745 -62437427 + MTEa LTR MaLR 225 379 0 3 1055 711 98 0 0 chr9 61639173 61639296 -62436876 + (CA)n Simple_repeat Simple_repeat 1 123 0 3 1055 429 20 0 0 chr9 61639546 61639596 -62436576 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1055 867 48 0 0 chr9 61639997 61640101 -62436071 + B2_Mm2 SINE B2 2 105 -90 3 1055 1508 213 105 42 chr9 61640237 61640619 -62435553 + MTD LTR MaLR 6 411 -8 3 1055 906 229 73 19 chr9 61640685 61640890 -62435282 + B3 SINE B2 1 216 0 3 1055 190 255 192 80 chr9 61641213 61641426 -62434746 - L2 LINE L2 -1199 2220 1984 3 1055 1973 145 6 57 chr9 61641429 61641780 -62434392 - ORR1C2 LTR MaLR -3 381 49 3 1055 276 313 113 0 chr9 61641850 61641965 -62434207 - MIR3 SINE MIR -47 161 34 3 1055 395 316 46 37 chr9 61642022 61642219 -62433953 - HAL1-2a_MD LINE L1 -517 2507 2344 3 1055 1529 272 83 11 chr9 61642809 61643277 -62432895 - RMER5 LTR ERV1 0 534 33 3 1055 479 17 17 0 chr9 61644394 61644454 -62431718 + (TCCA)n Simple_repeat Simple_repeat 4 64 0 3 1055 25 0 0 0 chr9 61645854 61645879 -62430293 + AT_rich Low_complexity Low_complexity 1 25 0 3 1055 188 222 0 0 chr9 61645959 61645995 -62430177 - MIR SINE MIR -6 256 221 3 1055 326 229 0 28 chr9 61646168 61646240 -62429932 - PB1D10 SINE Alu -1 116 47 3 1055 698 255 243 17 chr9 61646301 61646536 -62429636 + B4A SINE B4 1 288 -4 3 1055 180 346 12 36 chr9 61647013 61647097 -62429075 - L2b LINE L2 -2 3373 3292 3 1055 267 281 119 24 chr9 61647181 61647265 -62428907 + ID_B1 SINE B4 5 96 -128 3 1055 207 162 0 0 chr9 61647334 61647371 -62428801 + GA-rich Low_complexity Low_complexity 1 37 0 3 1055 281 358 34 7 chr9 61647486 61647635 -62428537 + L3 LINE CR1 3790 3942 -547 3 1055 9515 60 1 3 chr9 61647710 61648958 -62427214 + L1_Mm LINE L1 4349 5593 -290 3 1055 3402 98 31 18 chr9 61648963 61649453 -62426719 + L1Md_F2 LINE L1 6085 6580 -2 3 1055 183 100 0 0 chr9 61649462 61649492 -62426680 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3 1055 450 0 0 0 chr9 61649615 61649665 -62426507 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1055 502 246 183 12 chr9 61649665 61649834 -62426338 - B4A SINE B4 -93 199 2 3 1055 361 258 71 10 chr9 61649840 61649938 -62426234 - B1_Mur2 SINE Alu 0 149 46 3 1055 283 278 160 1 chr9 61649979 61650097 -62426075 + MIRb SINE MIR 102 231 -31 3 1055 250 322 18 40 chr9 61650470 61650601 -62425571 - LTR16C LTR ERVL -3 535 406 3 1055 633 303 93 25 chr9 61650647 61651052 -62425120 + MLT1D LTR MaLR 5 505 0 3 1055 357 373 44 31 chr9 61651319 61651612 -62424560 + L2b LINE L2 3025 3321 -54 3 1055 288 0 0 0 chr9 61652035 61652067 -62424105 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1055 241 362 108 16 chr9 61652719 61652848 -62423324 + LTR33B LTR ERVL 91 231 -272 3 1055 423 0 0 0 chr9 61653537 61653584 -62422588 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1055 773 252 0 7 chr9 61653585 61653733 -62422439 - B3A SINE B2 -50 148 2 3 1055 749 262 171 0 chr9 61657428 61657615 -62418557 + ID_B1 SINE B4 4 222 -2 3 1055 3089 116 40 22 chr9 61658486 61658988 -62417184 + RLTR28 LTR ERVL 1 511 -13 3 1055 1146 172 64 0 chr9 61659627 61659830 -62416342 + ID_B1 SINE B4 1 216 -8 3 1055 495 0 0 0 chr9 61660026 61660081 -62416091 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 3 1055 1160 45 0 0 chr9 61660081 61660215 -62415957 - B1_Mus1 SINE Alu -13 135 2 3 1055 742 279 5 20 chr9 61660437 61660593 -62415579 + B3A SINE B2 1 154 -44 3 1055 366 42 0 0 chr9 61660593 61660641 -62415531 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1055 742 279 5 20 chr9 61660641 61660685 -62415487 + B3A SINE B2 155 198 0 3 1055 889 255 77 0 chr9 61660857 61661053 -62415119 + ID_B1 SINE B4 2 212 -12 3 1055 1295 220 61 97 chr9 61661249 61661641 -62414531 - MTE2a LTR MaLR -1 378 1 3 1055 904 261 69 62 chr9 61661984 61662274 -62413898 + B4 SINE B4 1 292 0 3 1055 232 299 126 26 chr9 61662951 61663102 -62413070 - MLT1J LTR MaLR -83 429 264 3 1055 765 130 20 14 chr9 61663298 61663446 -62412726 + GA-rich Low_complexity Low_complexity 1 149 0 3 1055 2124 184 53 2 chr9 61665737 61666136 -62410036 - MTD LTR MaLR 0 419 1 3 1055 601 244 143 24 chr9 61666188 61666356 -62409816 - MLT1B LTR MaLR -11 379 192 3 1055 892 259 14 118 chr9 61666394 61666674 -62409498 + B4 SINE B4 42 292 0 3 1055 576 0 0 0 chr9 61666708 61666772 -62409400 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1055 318 302 83 51 chr9 61666814 61666971 -62409201 - MLT1B LTR MaLR -201 189 28 3 1055 205 372 13 13 chr9 61668097 61668176 -62407996 - L2b LINE L2 -22 3353 3275 3 1055 365 260 0 0 chr9 61668257 61668330 -62407842 + RSINE1 SINE B4 2 74 -91 3 1055 216 352 11 11 chr9 61668855 61668947 -62407225 - MIRc SINE MIR -75 193 102 3 1055 1329 167 12 50 chr9 61668947 61669206 -62406966 + B4A SINE B4 6 254 -38 3 1055 357 82 0 0 chr9 61669238 61669287 -62406885 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1055 353 331 81 108 chr9 61669671 61670040 -62406132 + ORR1E LTR MaLR 1 359 0 3 1055 998 237 8 81 chr9 61670125 61670229 -62405943 + ID SINE ID 2 88 -136 3 1055 3121 20 3 0 chr9 61670229 61670574 -62405598 - ORR1A0 LTR MaLR 0 346 1 3 1055 998 237 8 81 chr9 61670574 61670703 -62405469 + ID_B1 SINE B4 89 218 -6 3 1055 1808 185 61 22 chr9 61670752 61671112 -62405060 - ORR1D1 LTR MaLR 0 374 1 3 1055 329 149 42 11 chr9 61671114 61671209 -62404963 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 3 1055 216 97 0 0 chr9 61671225 61671256 -62404916 + (TATG)n Simple_repeat Simple_repeat 2 32 0 3 1055 806 247 58 5 chr9 61672091 61672282 -62403890 - ID_B1 SINE B4 -16 208 8 3 1055 242 404 53 0 chr9 61672524 61672638 -62403534 - Tigger12 DNA MER2_type -13 1946 1827 3 1055 459 113 0 0 chr9 61672673 61672744 -62403428 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1055 1192 167 42 5 chr9 61672865 61673082 -62403090 - URR1B DNA MER1_type 0 225 1 3 1055 698 114 18 0 chr9 61673462 61673576 -62402596 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 3 1055 214 312 45 84 chr9 61673686 61673840 -62402332 - L2b LINE L2 -24 3351 3204 3 1055 408 315 109 30 chr9 61673854 61674140 -62402032 + ORR1D2 LTR MaLR 1 366 -4 3 1055 263 357 8 43 chr9 61675315 61675432 -62400740 - MIRb SINE MIR -57 211 99 3 1055 546 280 42 7 chr9 61675763 61675907 -62400265 + RSINE1 SINE B4 3 151 -14 3 1055 472 196 37 9 chr9 61678500 61678608 -62397564 + PB1D10 SINE Alu 1 111 -6 3 1055 404 19 19 0 chr9 61678827 61678880 -62397292 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1055 258 32 0 0 chr9 61678880 61678911 -62397261 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1055 580 270 43 48 chr9 61679048 61679235 -62396937 - RMER30 DNA MER1_type 0 202 17 3 1055 227 167 0 77 chr9 61679293 61679345 -62396827 + Charlie12 DNA MER1_type 2810 2857 -16 3 1055 377 319 42 0 chr9 61679450 61679569 -62396603 - MLT2C2 LTR ERVL -340 124 1 3 1055 1448 258 36 14 chr9 61679738 61680096 -62396076 - MTE2b LTR MaLR -11 368 3 3 1055 435 279 204 25 chr9 61680096 61680331 -62395841 + B4A SINE B4 2 278 -14 3 1055 787 314 46 18 chr9 61680725 61681010 -62395162 - MamRep434 DNA TcMar 0 426 134 3 1055 333 267 54 12 chr9 61681013 61681160 -62395012 - B3A SINE B2 -18 198 1 3 1055 323 262 137 38 chr9 61681430 61681561 -62394611 + MIRb SINE MIR 99 242 -26 3 1055 342 0 0 0 chr9 61681988 61682026 -62394146 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 3 1055 1065 108 0 0 chr9 61682028 61682186 -62393986 + (GAA)n Simple_repeat Simple_repeat 1 158 0 3 1055 911 262 37 70 chr9 61682303 61682366 -62393806 - B4A SINE B4 -2 290 241 3 1055 234 0 0 0 chr9 61682366 61682392 -62393780 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1055 911 262 37 70 chr9 61682392 61682627 -62393545 - B4A SINE B4 -52 240 2 3 1055 219 253 24 71 chr9 61682718 61682803 -62393369 - MIR SINE MIR -105 157 77 3 1055 1112 241 131 10 chr9 61683201 61683498 -62392674 - MTE2b LTR MaLR -46 333 1 3 1055 392 0 21 0 chr9 61683763 61683811 -62392361 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1055 2451 118 11 8 chr9 61683825 61684191 -62391981 + ORR1B2 LTR MaLR 1 367 0 3 1055 559 242 88 8 chr9 61684208 61684333 -62391839 - B1_Mur1 SINE Alu -12 137 3 3 1055 506 201 75 31 chr9 61684347 61684506 -62391666 - Lx9 LINE L1 0 7644 7479 3 1055 297 0 0 0 chr9 61684506 61684539 -62391633 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 3 1055 345 24 0 0 chr9 61684540 61684582 -62391590 + (TAGG)n Simple_repeat Simple_repeat 2 43 0 3 1055 383 226 165 28 chr9 61684585 61684694 -62391478 - B1_Mur1 SINE Alu -20 129 6 4 1055 519 17 0 0 chr9 61684733 61684793 -62391379 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 4 1055 1134 198 19 14 chr9 61685263 61685478 -62390694 + B3 SINE B2 1 216 0 4 1055 594 250 9 0 chr9 61685633 61685745 -62390427 - PB1D9 SINE Alu -6 114 2 4 1055 1161 41 7 52 chr9 61685970 61686125 -62390047 - B1_Mus1 SINE Alu 0 148 1 4 1055 323 295 10 21 chr9 61686128 61686225 -62389947 - B1F SINE Alu 0 149 54 4 1055 279 79 0 0 chr9 61686229 61686267 -62389905 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1055 280 319 0 0 chr9 61686296 61686365 -62389807 - B4A SINE B4 -8 284 216 4 1055 468 0 0 0 chr9 61686428 61686480 -62389692 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 4 1055 783 235 33 0 chr9 61686842 61686995 -62389177 - B3A SINE B2 -38 160 3 4 1055 21 36 0 0 chr9 61687644 61687672 -62388500 + AT_rich Low_complexity Low_complexity 1 28 0 4 1055 277 190 129 12 chr9 61687672 61687757 -62388415 + Lx8 LINE L1 6932 7026 -447 4 1055 255 229 0 0 chr9 61687833 61687894 -62388278 + (CATA)n Simple_repeat Simple_repeat 4 64 0 4 1055 413 269 55 135 chr9 61688165 61688399 -62387773 + MIRc SINE MIR 22 242 -26 4 1055 268 250 15 15 chr9 61688401 61688466 -62387706 - MIRm SINE MIR 0 276 212 4 1055 523 250 19 39 chr9 61688472 61688626 -62387546 - L1MB5 LINE L1 -17 6157 6007 4 1055 243 0 0 0 chr9 61688651 61688678 -62387494 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1055 556 284 39 0 chr9 61688682 61688809 -62387363 - RSINE1 SINE B4 -32 133 2 4 1055 246 221 0 206 chr9 61689707 61689804 -62386368 + LTR33A_ LTR ERVL 141 217 -314 4 1055 447 52 0 0 chr9 61689812 61689870 -62386302 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1055 943 261 62 15 chr9 61689870 61690137 -62386035 - B4A SINE B4 -6 286 6 4 1055 1144 258 29 18 chr9 61690612 61690892 -62385280 + B4 SINE B4 2 284 -8 4 1055 432 37 0 0 chr9 61690911 61690965 -62385207 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1055 351 0 0 0 chr9 61691054 61691093 -62385079 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1055 706 241 73 0 chr9 61691096 61691233 -62384939 - B3A SINE B2 -48 150 4 4 1055 562 246 29 15 chr9 61691586 61691722 -62384450 - B3A SINE B2 -60 138 1 4 1055 237 33 0 0 chr9 61691796 61691826 -62384346 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 4 1055 389 282 143 49 chr9 61692586 61692851 -62383321 + B4A SINE B4 1 290 -2 4 1055 1418 89 15 15 chr9 61692893 61693088 -62383084 + B2_Mm2 SINE B2 1 195 0 4 1055 652 257 0 7 chr9 61693206 61693347 -62382825 + B1_Mur1 SINE Alu 3 142 -7 4 1055 192 77 0 0 chr9 61693347 61693373 -62382799 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1055 1011 221 19 0 chr9 61693377 61693585 -62382587 + B3 SINE B2 5 216 0 4 1055 370 294 10 0 chr9 61693683 61693785 -62382387 + MER45A DNA Tip100 59 161 -17 4 1055 995 250 53 23 chr9 61694004 61694266 -62381906 + B4 SINE B4 5 274 -18 4 1055 413 36 0 18 chr9 61694274 61694330 -62381842 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1055 427 265 64 35 chr9 61694588 61694729 -62381443 - MLT1A1 LTR MaLR 0 408 264 4 1055 382 287 15 58 chr9 61694923 61695060 -62381112 - MLT1A1 LTR MaLR -228 146 16 4 1055 820 250 5 25 chr9 61695212 61695413 -62380759 + B3A SINE B2 1 197 -1 4 1055 950 146 33 71 chr9 61695433 61695617 -62380555 + B2_Mm2 SINE B2 2 178 -17 4 1055 234 150 0 0 chr9 61695617 61695657 -62380515 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1055 259 284 0 15 chr9 61695738 61695806 -62380366 + RSINE1 SINE B4 3 69 -96 4 1055 303 170 0 0 chr9 61696031 61696084 -62380088 + B3A SINE B2 1 53 -145 4 1055 430 295 84 65 chr9 61696088 61696349 -62379823 - ORSL-2a DNA Tip100 -57 285 20 4 1055 592 282 128 16 chr9 61696465 61696714 -62379458 - MamRep434 DNA TcMar -13 413 137 4 1055 353 217 0 14 chr9 61697017 61697087 -62379085 + ID4_ SINE ID 2 70 -13 4 1055 296 222 31 72 chr9 61697098 61697113 -62379059 + PB1D9 SINE Alu 27 119 -1 4 1055 560 122 0 0 chr9 61697113 61697195 -62378977 + ID_B1 SINE B4 142 223 -1 4 1055 553 266 44 0 chr9 61697203 61697316 -62378856 + RSINE1 SINE B4 7 124 -41 4 1055 1131 104 0 0 chr9 61697327 61697500 -62378672 + (CA)n Simple_repeat Simple_repeat 1 173 0 4 1055 609 270 109 58 chr9 61698073 61698348 -62377824 - B4 SINE B4 -2 290 2 4 1055 1264 214 148 6 chr9 61698729 61699053 -62377119 - ORR1D2 LTR MaLR 0 370 1 4 1055 578 276 87 38 chr9 61699203 61699404 -62376768 - MTEb LTR MaLR -4 415 169 4 1055 966 228 34 19 chr9 61700496 61700702 -62375470 - B3 SINE B2 -6 210 2 4 1055 910 202 60 0 chr9 61700706 61700874 -62375298 - MTEb LTR MaLR -201 178 1 4 1055 257 348 111 52 chr9 61701105 61701411 -62374761 - MLT1M LTR MaLR -227 445 122 4 1055 248 264 38 0 chr9 61702160 61702213 -62373959 - MIRb SINE MIR -158 110 56 4 1055 261 170 19 0 chr9 61702524 61702577 -62373595 + B4A SINE B4 2 55 -237 4 1055 1215 41 0 7 chr9 61702578 61702725 -62373447 + B1_Mus2 SINE Alu 2 147 0 4 1055 2027 133 0 10 chr9 61704882 61705185 -62370987 + ORR1A3 LTR MaLR 27 326 0 4 1055 850 249 35 0 chr9 61705526 61705723 -62370449 + ID_B1 SINE B4 3 206 -18 4 1055 234 0 0 0 chr9 61705768 61705794 -62370378 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1055 1029 248 0 9 chr9 61706503 61706719 -62369453 + B3 SINE B2 3 216 0 4 1055 427 206 11 0 chr9 61707630 61707805 -62368367 + CT-rich Low_complexity Low_complexity 2 178 0 4 1055 189 0 0 0 chr9 61707806 61707827 -62368345 + (TCTCTG)n Simple_repeat Simple_repeat 2 22 0 4 1055 688 295 82 48 chr9 61708256 61708587 -62367585 + MT2A LTR ERVL 39 380 -153 4 1055 366 279 146 35 chr9 61708702 61708873 -62367299 - MLT1K LTR MaLR -359 236 47 4 1055 807 210 14 20 chr9 61709138 61709284 -62366888 - B1_Mur1 SINE Alu 0 149 5 4 1055 306 0 0 0 chr9 61709422 61709456 -62366716 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1055 207 0 0 0 chr9 61709456 61709478 -62366694 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 1055 1056 205 106 8 chr9 61709484 61709730 -62366442 - B4A SINE B4 -20 272 3 4 1055 195 69 0 0 chr9 61709885 61709914 -62366258 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 4 1055 252 250 151 19 chr9 61710355 61710461 -62365711 + MER5A1 DNA MER1_type 44 163 -3 4 1055 449 231 202 0 chr9 61710639 61710743 -62365429 + RSINE1 SINE B4 2 126 -39 4 1055 186 133 0 0 chr9 61710779 61710809 -62365363 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1055 300 264 189 42 chr9 61710837 61710932 -62365240 + PB1D10 SINE Alu 7 115 -2 4 1055 432 288 18 0 chr9 61711020 61711131 -62365041 - MER81 DNA AcHobo -1 113 1 4 1055 3182 90 45 36 chr9 61711151 61711622 -62364550 + MT2C_Mm LTR ERVL 1 475 0 4 1055 254 313 30 0 chr9 61711698 61711797 -62364375 + MER5A1 DNA MER1_type 47 148 -18 4 1055 254 254 0 31 chr9 61711839 61711904 -62364268 - MTE2b LTR MaLR -38 341 279 4 1055 711 255 19 7 chr9 61712006 61712160 -62364012 - RSINE1 SINE B4 -8 157 2 4 1055 387 0 0 0 chr9 61713069 61713112 -62363060 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1055 243 331 90 26 chr9 61713544 61713699 -62362473 + MER115 DNA Tip100 526 690 -3 4 1055 180 260 20 20 chr9 61714095 61714146 -62362026 - MIR3 SINE MIR 0 208 158 4 1055 825 196 185 0 chr9 61714161 61714334 -62361838 + B3 SINE B2 2 206 -10 4 1055 501 304 30 108 chr9 61714337 61714405 -62361767 + B4 SINE B4 25 81 -211 4 1055 917 166 193 0 chr9 61714405 61714586 -62361586 + B3 SINE B2 1 216 0 4 1055 501 304 30 108 chr9 61714586 61714720 -62361452 + B4 SINE B4 82 211 -81 4 1055 653 297 61 0 chr9 61714720 61714868 -62361304 + RSINE1 SINE B4 2 158 -7 4 1055 185 65 32 0 chr9 61714949 61714980 -62361192 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1055 186 333 0 0 chr9 61715043 61715094 -62361078 - MIR SINE MIR -76 132 82 4 1055 1049 272 20 31 chr9 61716177 61716469 -62359703 - B4A SINE B4 -3 289 1 4 1055 217 365 59 0 chr9 61716719 61716804 -62359368 + ID_B1 SINE B4 8 97 -127 4 1055 1042 218 29 19 chr9 61717170 61717376 -62358796 + ID_B1 SINE B4 11 218 -6 4 1055 3873 53 20 2 chr9 61717383 61717870 -62358302 + LTRIS2 LTR ERV1 69 564 0 4 1055 2001 172 34 8 chr9 61717983 61718340 -62357832 + ORR1D1 LTR MaLR 1 366 -8 4 1055 2018 164 100 6 chr9 61718472 61718833 -62357339 + MTC LTR MaLR 13 407 -14 4 1055 423 0 0 0 chr9 61718838 61718885 -62357287 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 4 1055 270 346 26 0 chr9 61719589 61719667 -62356505 + RSINE1 SINE B4 72 151 -14 4 1055 203 98 24 0 chr9 61721695 61721717 -62354455 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1055 1624 31 5 0 chr9 61721717 61721908 -62354264 + B2_Mm1a SINE B2 2 193 0 4 1055 203 98 24 0 chr9 61721908 61721926 -62354246 + (CAAAA)n Simple_repeat Simple_repeat 1 18 0 4 1055 510 17 0 0 chr9 61721996 61722055 -62354117 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1055 434 275 18 0 chr9 61722564 61722673 -62353499 + PB1D10 SINE Alu 1 111 -6 4 1055 990 279 38 35 chr9 61722677 61722967 -62353205 + B4A SINE B4 2 292 0 4 1055 222 295 33 82 chr9 61723688 61723810 -62352362 + MIR SINE MIR 117 232 -30 5 1055 24 0 0 0 chr9 61723958 61723982 -62352190 + AT_rich Low_complexity Low_complexity 1 24 0 5 1055 1344 259 95 5 chr9 61724046 61724264 -62351908 + MTD LTR MaLR 6 226 -193 5 1055 1031 45 104 7 chr9 61724264 61724399 -62351773 + B1_Mus1 SINE Alu 1 148 0 5 1055 1344 259 95 5 chr9 61724399 61724560 -62351612 + MTD LTR MaLR 227 418 -1 5 1055 225 261 75 54 chr9 61725105 61725198 -62350974 - B1_Mur2 SINE Alu -32 117 23 5 1055 713 203 60 7 chr9 61725132 61725281 -62350891 - ID_B1 SINE B4 -52 172 16 5 1055 738 246 149 15 chr9 61726245 61726467 -62349705 - ID_B1 SINE B4 -40 252 8 5 1055 189 302 54 65 chr9 61726543 61726635 -62349537 + MIRb SINE MIR 109 199 -69 5 1055 184 319 143 14 chr9 61726985 61727055 -62349117 + MIRm SINE MIR 82 160 -116 5 1055 1217 69 6 0 chr9 61727239 61727398 -62348774 + B2_Mm1t SINE B2 1 160 -33 5 1055 207 0 0 0 chr9 61727398 61727421 -62348751 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1055 707 314 177 21 chr9 61727975 61728495 -62347677 + L1MB5 LINE L1 5574 6174 0 5 1055 520 255 65 26 chr9 61728516 61728669 -62347503 + RSINE1 SINE B4 3 161 -4 5 1055 670 224 11 96 chr9 61728725 61728903 -62347269 + RSINE1 SINE B4 3 165 0 5 1055 1381 29 6 0 chr9 61728970 61729140 -62347032 - L1_Mus1 LINE L1 0 6567 6397 5 1055 437 0 19 0 chr9 61729195 61729248 -62346924 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1055 659 278 55 40 chr9 61729721 61729923 -62346249 + ID_B1 SINE B4 4 208 -16 5 1055 753 255 123 7 chr9 61730014 61730302 -62345870 + ORR1D2 LTR MaLR 1 368 -6 5 1055 294 233 45 23 chr9 61730343 61730431 -62345741 - BC1_Mm scRNA scRNA -62 90 1 5 1055 772 340 92 17 chr9 61730420 61730864 -62345308 + MLT1F1 LTR MaLR 29 486 -83 5 1055 725 255 14 0 chr9 61731032 61731177 -62344995 + RSINE1 SINE B4 2 148 -17 5 1055 1207 52 112 22 chr9 61731187 61731365 -62344807 - B2_Mm2 SINE B2 0 195 2 5 1055 1720 131 26 7 chr9 61731373 61731642 -62344530 - MTC LTR MaLR -2 419 146 5 1055 310 229 57 0 chr9 61731613 61731683 -62344489 + PB1D7 SINE Alu 20 93 -27 5 1055 243 0 0 0 chr9 61731763 61731790 -62344382 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1055 459 100 0 0 chr9 61731824 61731894 -62344278 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1055 616 189 9 0 chr9 61731903 61732009 -62344163 - B3A SINE B2 -91 107 1 5 1055 253 277 67 38 chr9 61732104 61732209 -62343963 + MLT1C LTR MaLR 279 386 -81 5 1055 1046 246 29 32 chr9 61733236 61733517 -62342655 + B4 SINE B4 3 282 -10 5 1055 417 54 0 0 chr9 61733525 61733581 -62342591 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1055 291 260 30 30 chr9 61733590 61733689 -62342483 + L2b LINE L2 3270 3368 -7 5 1055 248 280 14 0 chr9 61734261 61734404 -62341768 + (CATA)n Simple_repeat Simple_repeat 2 146 0 5 1055 596 186 11 33 chr9 61734433 61734616 -62341556 + (CATA)n Simple_repeat Simple_repeat 2 180 0 5 1055 318 277 0 0 chr9 61734603 61734744 -62341428 + (CA)n Simple_repeat Simple_repeat 2 142 0 5 1056 750 245 7 7 chr9 61734931 61735079 -62341093 - RSINE1 SINE B4 -16 149 2 5 1056 224 268 68 27 chr9 61735116 61735189 -62340983 - B1_Mus2 SINE Alu -1 146 71 5 1056 282 29 0 0 chr9 61735538 61735573 -62340599 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 5 1056 403 100 14 14 chr9 61736183 61736254 -62339918 + (CCCCCT)n Simple_repeat Simple_repeat 6 76 0 5 1056 519 269 115 73 chr9 61736290 61736551 -62339621 - B4A SINE B4 -19 273 2 5 1056 431 248 84 14 chr9 61736644 61736787 -62339385 - RSINE1 SINE B4 -10 155 3 5 1056 1157 186 14 14 chr9 61736874 61737081 -62339091 - B3 SINE B2 0 216 10 5 1056 228 67 0 0 chr9 61737185 61737215 -62338957 + (CATA)n Simple_repeat Simple_repeat 3 32 0 5 1056 188 304 139 0 chr9 61737655 61737734 -62338438 - MIR SINE MIR -86 122 33 5 1056 296 250 0 27 chr9 61738232 61738306 -62337866 + ID4_ SINE ID 2 73 -10 5 1056 261 0 0 0 chr9 61738366 61738395 -62337777 + (TTGTG)n Simple_repeat Simple_repeat 2 30 0 5 1056 1216 223 9 0 chr9 61738398 61738618 -62337554 - ID_B1 SINE B4 -1 223 2 5 1056 315 0 0 0 chr9 61738622 61738657 -62337515 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1056 814 254 0 48 chr9 61738715 61738901 -62337271 + B3A SINE B2 7 183 -15 5 1056 903 136 0 0 chr9 61738904 61739029 -62337143 + B1_Mur3 SINE Alu 18 142 -7 5 1056 599 79 0 22 chr9 61739033 61739124 -62337048 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 5 1056 409 292 17 28 chr9 61739344 61739481 -62336691 + PB1D10 SINE Alu 2 135 -14 5 1056 352 333 45 37 chr9 61739986 61740120 -62336052 + RSINE1 SINE B4 11 145 -20 5 1056 541 250 44 25 chr9 61740360 61740520 -62335652 + RSINE1 SINE B4 3 165 0 5 1056 329 287 43 0 chr9 61740844 61740959 -62335213 + L1M5 LINE L1 5480 5599 -580 5 1056 661 252 0 13 chr9 61740965 61741118 -62335054 + RSINE1 SINE B4 1 151 -14 5 1056 1395 86 37 11 chr9 61741194 61741366 -62334806 + B2_Mm2 SINE B2 3 181 -14 5 1056 1099 109 0 7 chr9 61741366 61741514 -62334658 + B1_Mus1 SINE Alu 2 148 0 5 1056 1395 86 37 11 chr9 61741514 61741529 -62334643 + B2_Mm2 SINE B2 182 195 0 5 1056 267 31 0 0 chr9 61741532 61741564 -62334608 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 5 1056 567 192 77 0 chr9 61742046 61742150 -62334022 + PB1D7 SINE Alu 5 116 -4 5 1056 750 210 172 0 chr9 61742356 61742542 -62333630 - ID_B1 SINE B4 -3 221 4 5 1056 546 16 0 0 chr9 61743173 61743236 -62332936 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 1056 246 258 161 0 chr9 61743380 61743473 -62332699 + RSINE1 SINE B4 50 157 -8 5 1056 342 0 0 0 chr9 61743746 61743784 -62332388 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1056 189 0 0 0 chr9 61744156 61744177 -62331995 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 5 1056 1218 36 0 0 chr9 61744178 61744315 -62331857 - B1_Mus1 SINE Alu -10 138 2 5 1056 707 301 15 17 chr9 61745115 61745316 -62330856 + ID_B1 SINE B4 22 220 -72 5 1056 339 300 10 77 chr9 61745185 61745380 -62330792 - YREP_Mm Unknown Unknown -1504 308 127 5 1056 877 241 117 12 chr9 61745381 61745629 -62330543 + B4A SINE B4 1 274 -18 5 1056 1361 153 0 5 chr9 61745802 61746006 -62330166 + B3 SINE B2 1 203 -13 5 1056 432 55 0 0 chr9 61746014 61746069 -62330103 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1056 313 236 0 0 chr9 61746071 61746126 -62330046 + B4 SINE B4 236 290 -2 5 1056 465 19 0 0 chr9 61746137 61746191 -62329981 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1056 193 293 47 47 chr9 61746227 61746313 -62329859 - MIRm SINE MIR -157 119 34 5 1056 199 318 157 9 chr9 61746641 61746749 -62329423 + MIRb SINE MIR 23 146 -122 5 1056 303 331 62 5 chr9 61746936 61747062 -62329110 - MIRb SINE MIR -125 143 2 5 1056 450 309 121 9 chr9 61747904 61748136 -62328036 - L1MA7 LINE L1 0 6291 6034 5 1056 613 189 137 16 chr9 61748209 61748333 -62327839 + B1F2 SINE Alu 1 139 -10 5 1056 305 24 0 23 chr9 61748704 61748747 -62327425 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 5 1056 1205 43 0 0 chr9 61748749 61748887 -62327285 - B1_Mm SINE Alu -6 141 4 5 1056 380 219 151 9 chr9 61749028 61749134 -62327038 + B1F SINE Alu 21 141 -8 5 1056 425 154 9 26 chr9 61749194 61749307 -62326865 + GA-rich Low_complexity Low_complexity 1 111 0 5 1056 764 220 93 19 chr9 61749911 61750073 -62326099 + B3 SINE B2 1 174 -42 5 1056 721 221 7 27 chr9 61751055 61751204 -62324968 + B1_Mur1 SINE Alu 3 148 -1 5 1056 388 123 14 14 chr9 61751229 61751303 -62324869 + GA-rich Low_complexity Low_complexity 2 75 0 5 1056 186 341 23 0 chr9 61751303 61751391 -62324781 - MIR SINE MIR -77 131 42 5 1056 511 217 25 34 chr9 61752746 61752865 -62323307 + ID_B1 SINE B4 105 222 -2 5 1056 809 287 43 3 chr9 61752905 61753133 -62323039 + ID_B1 SINE B4 9 246 -46 5 1056 489 200 0 62 chr9 61753857 61753969 -62322203 + RSINE1 SINE B4 56 160 -5 5 1056 1125 95 0 0 chr9 61753998 61754146 -62322026 + B1_Mus1 SINE Alu 1 148 0 5 1056 316 258 0 31 chr9 61754149 61754213 -62321959 + L1MEg LINE L1 1892 1953 -4131 5 1056 305 209 14 56 chr9 61754214 61754285 -62321887 + B3A SINE B2 5 72 -126 5 1056 418 176 15 0 chr9 61754272 61754340 -62321832 + B1_Mur3 SINE Alu 69 137 -12 5 1056 837 188 0 0 chr9 61754354 61754492 -62321680 + B1_Mur2 SINE Alu 6 143 -6 5 1056 539 202 0 162 chr9 61755221 61755326 -62320846 - RSINE1 SINE B4 -38 127 42 5 1056 6431 165 42 41 chr9 61755326 61756565 -62319607 - Lx5 LINE L1 0 7050 5811 5 1056 539 202 0 162 chr9 61756565 61756601 -62319571 - RSINE1 SINE B4 -124 41 9 5 1056 195 129 0 0 chr9 61756605 61756636 -62319536 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 1056 791 196 0 7 chr9 61756636 61756785 -62319387 - B1_Mur1 SINE Alu -1 148 1 5 1056 417 302 60 48 chr9 61756794 61756961 -62319211 - B3A SINE B2 -6 192 24 5 1056 419 174 69 11 chr9 61756981 61757068 -62319104 - RSINE1 SINE B4 -71 94 3 5 1056 306 284 51 102 chr9 61757953 61758149 -62318023 + B4 SINE B4 34 219 -73 5 1056 564 261 0 14 chr9 61758016 61758156 -62318016 + B1F SINE Alu 12 149 0 5 1056 1239 35 14 0 chr9 61759058 61759203 -62316969 + B1_Mus2 SINE Alu 1 147 0 5 1056 211 227 0 0 chr9 61759280 61759324 -62316848 + ID SINE ID 2 45 -179 6 1056 286 191 0 0 chr9 61760063 61760110 -62316062 + B1F1 SINE Alu 94 140 -9 6 1056 755 102 74 25 chr9 61760396 61760517 -62315655 - B1_Mus1 SINE Alu -21 127 1 6 1056 261 296 2 14 chr9 61761876 61761968 -62314204 + B4 SINE B4 1 89 -203 6 1056 283 194 48 33 chr9 61763082 61763158 -62313014 + MTD LTR MaLR 337 413 -8 6 1056 180 0 0 0 chr9 61763479 61763499 -62312673 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1056 478 283 141 0 chr9 61763502 61763686 -62312486 - ID_B1 SINE B4 -14 210 1 6 1056 1202 74 0 0 chr9 61763730 61763878 -62312294 - B1_Mus1 SINE Alu 0 148 1 6 1056 448 291 78 8 chr9 61763878 61764005 -62312167 - B1F SINE Alu -11 138 2 6 1056 22 0 0 0 chr9 61765287 61765309 -62310863 + AT_rich Low_complexity Low_complexity 1 22 0 6 1056 1190 68 0 0 chr9 61765742 61765888 -62310284 + B1_Mus1 SINE Alu 1 146 -2 6 1056 434 188 24 48 chr9 61766042 61766126 -62310046 + B1_Mur4 SINE Alu 2 83 -67 6 1056 1094 82 0 20 chr9 61766126 61766275 -62309897 + B1_Mus1 SINE Alu 2 147 -1 6 1056 239 257 83 66 chr9 61766275 61766311 -62309861 + PB1 SINE Alu 91 123 -4 6 1056 459 0 0 0 chr9 61767193 61767244 -62308928 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1056 245 310 67 39 chr9 61768326 61768430 -62307742 - B1F1 SINE Alu -16 133 27 6 1056 468 232 0 0 chr9 61768539 61768621 -62307551 + B3 SINE B2 4 85 -131 6 1056 23 0 0 0 chr9 61770671 61770694 -62305478 + AT_rich Low_complexity Low_complexity 1 23 0 6 1056 192 200 0 0 chr9 61771248 61771288 -62304884 + GA-rich Low_complexity Low_complexity 2 41 0 6 1056 323 250 44 0 chr9 61771321 61771389 -62304783 + ID4 SINE ID 12 82 -1 6 1056 753 219 14 0 chr9 61772159 61772305 -62303867 - B1_Mur1 SINE Alu 0 149 2 6 1056 437 62 15 0 chr9 61773049 61773114 -62303058 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1056 218 311 54 22 chr9 61773547 61773639 -62302533 + B4 SINE B4 3 97 -195 6 1056 223 246 0 47 chr9 61774600 61774632 -62301540 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 6 1056 1174 55 0 40 chr9 61774632 61774784 -62301388 + B1_Mus2 SINE Alu 2 147 0 6 1056 223 246 0 47 chr9 61774784 61774815 -62301357 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 6 1056 500 0 17 0 chr9 61775533 61775593 -62300579 + (GA)n Simple_repeat Simple_repeat 1 61 0 6 1056 748 236 53 48 chr9 61775630 61775839 -62300333 - B3 SINE B2 -5 211 2 6 1056 1515 77 0 5 chr9 61775845 61776040 -62300132 - B2_Mm2 SINE B2 -1 194 1 6 1056 797 128 78 57 chr9 61776044 61776185 -62299987 - B1_Mm SINE Alu 0 147 4 6 1056 228 147 0 0 chr9 61776193 61776227 -62299945 - B3A SINE B2 -161 37 4 6 1056 1582 188 42 91 chr9 61776254 61776640 -62299532 + ORR1D1 LTR MaLR 1 367 -7 6 1056 283 278 120 12 chr9 61777074 61777165 -62299007 + B1F1 SINE Alu 1 98 -19 6 1056 204 109 35 52 chr9 61777171 61777229 -62298943 + (CAAA)n Simple_repeat Simple_repeat 3 59 0 6 1056 356 217 145 0 chr9 61777242 61777325 -62298847 + RSINE1 SINE B4 4 98 -67 6 1056 592 146 173 0 chr9 61777618 61777728 -62298444 + B1_Mus1 SINE Alu 20 148 0 6 1056 1172 28 35 0 chr9 61777798 61777940 -62298232 - B1_Mm SINE Alu 0 147 1 6 1056 1434 88 0 5 chr9 61778239 61778434 -62297738 + B2_Mm2 SINE B2 2 195 0 6 1056 1112 219 0 10 chr9 61778474 61778677 -62297495 + B3 SINE B2 16 216 0 6 1056 180 273 91 0 chr9 61778788 61778843 -62297329 + L4 LINE RTE 795 854 -1175 6 1056 187 239 0 42 chr9 61778887 61778935 -62297237 - MIRc SINE MIR -173 95 50 6 1056 216 233 195 11 chr9 61779017 61779104 -62297068 + PB1D7 SINE Alu 18 120 0 6 1056 221 308 0 0 chr9 61779103 61779155 -62297017 + B1F1 SINE Alu 1 52 -97 6 1056 518 183 0 0 chr9 61779196 61779300 -62296872 + Lx9 LINE L1 7533 7636 -8 6 1056 229 219 61 30 chr9 61780099 61780165 -62296007 - ID4 SINE ID -11 72 5 6 1056 972 66 80 14 chr9 61780333 61780471 -62295701 - B1_Mus1 SINE Alu -1 147 1 6 1056 875 198 24 18 chr9 61780523 61780688 -62295484 - B3 SINE B2 -50 166 1 6 1056 23 0 0 0 chr9 61780688 61780711 -62295461 + AT_rich Low_complexity Low_complexity 1 23 0 6 1056 635 189 19 0 chr9 61780724 61780830 -62295342 - RSINE1 SINE B4 -36 129 22 6 1056 1339 55 43 11 chr9 61781431 61781616 -62294556 + B2_Mm2 SINE B2 5 195 0 6 1056 218 346 86 0 chr9 61781626 61781707 -62294465 + B4A SINE B4 87 174 -118 6 1056 292 240 41 10 chr9 61781996 61782093 -62294079 + PB1D7 SINE Alu 1 100 -20 6 1056 742 138 26 8 chr9 61782894 61783011 -62293161 + PB1D9 SINE Alu 2 120 0 6 1056 1715 170 106 63 chr9 61783427 61783554 -62292618 + MTD LTR MaLR 1 121 -298 6 1056 1128 69 14 0 chr9 61783554 61783698 -62292474 - B1_Mus1 SINE Alu 0 148 3 6 1056 1715 170 106 63 chr9 61783698 61783773 -62292399 + MTD LTR MaLR 122 206 -213 6 1056 1356 109 16 0 chr9 61783773 61783965 -62292207 + B2_Mm2 SINE B2 1 195 0 6 1056 1715 170 106 63 chr9 61783965 61784157 -62292015 + MTD LTR MaLR 207 413 -6 6 1056 219 259 11 69 chr9 61784678 61784692 -62291480 - PB1 SINE Alu -41 86 5 6 1056 259 292 0 14 chr9 61784692 61784765 -62291407 - ID_B1 SINE B4 -67 157 86 6 1056 523 229 57 0 chr9 61785613 61785735 -62290437 + B1F SINE Alu 21 149 0 6 1056 819 169 28 7 chr9 61785771 61785914 -62290258 + B1_Mus1 SINE Alu 2 147 -1 6 1056 491 226 56 35 chr9 61785984 61786126 -62290046 - B1F2 SINE Alu -3 146 2 6 1056 615 289 26 7 chr9 61786178 61786331 -62289841 + RSINE1 SINE B4 10 165 0 6 1056 817 182 6 63 chr9 61786428 61786586 -62289586 - B1_Mur4 SINE Alu 0 150 2 6 1056 297 0 0 0 chr9 61786641 61786674 -62289498 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1056 614 232 24 16 chr9 61786708 61786835 -62289337 - ID_B1 SINE B4 -6 218 91 6 1056 359 295 56 70 chr9 61786835 61786850 -62289322 + YREP_Mm Unknown Unknown 183 322 -1490 6 1056 305 235 0 56 chr9 61787040 61787112 -62289060 - ID4 SINE ID -13 70 3 6 1056 472 156 1 0 chr9 61787292 61787374 -62288798 - B3A SINE B2 -133 83 1 6 1056 678 184 137 22 chr9 61787457 61787596 -62288576 + B3 SINE B2 58 212 -4 6 1056 412 75 0 0 chr9 61787927 61787980 -62288192 - B1_Mus2 SINE Alu -94 53 1 6 1056 388 197 42 0 chr9 61787980 61787998 -62288174 - ID_B1 SINE B4 -90 134 61 6 1056 276 333 45 0 chr9 61788786 61788897 -62287275 - L2 LINE L2 -567 2852 2737 6 1056 245 366 53 8 chr9 61788963 61789095 -62287077 + Charlie10 DNA MER1_type 95 232 -2590 6 1056 469 221 82 48 chr9 61789364 61789382 -62286790 + ID_B1 SINE B4 72 171 -53 6 1056 767 156 8 0 chr9 61789382 61789504 -62286668 + B1_Mus1 SINE Alu 5 127 -21 6 1056 303 232 128 69 chr9 61789586 61789688 -62286484 + PB1D10 SINE Alu 7 114 -3 6 1056 198 0 0 0 chr9 61789814 61789836 -62286336 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1056 444 246 10 0 chr9 61789940 61790038 -62286134 - PB1D7 SINE Alu -29 120 23 6 1056 270 274 147 0 chr9 61790207 61790302 -62285870 + PB1D7 SINE Alu 10 118 -2 6 1056 270 301 36 115 chr9 61790309 61790376 -62285796 + B4A SINE B4 47 174 -118 6 1056 296 306 0 0 chr9 61790376 61790448 -62285724 + B1F1 SINE Alu 14 85 -64 6 1056 1311 187 125 10 chr9 61790463 61790760 -62285412 + ORR1D1 LTR MaLR 44 374 0 6 1056 415 167 0 15 chr9 61790835 61790902 -62285270 + ID4 SINE ID 5 70 -13 6 1056 1258 48 0 0 chr9 61790951 61791096 -62285076 + B1_Mm SINE Alu 2 146 -1 6 1056 216 0 0 0 chr9 61791100 61791124 -62285048 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 1056 3024 55 21 0 chr9 61791153 61791536 -62284636 - L1Md_F2 LINE L1 0 6582 6192 6 1056 891 150 0 41 chr9 61791585 61791731 -62284441 + B1_Mur2 SINE Alu 10 149 0 6 1056 341 162 0 14 chr9 61791756 61791825 -62284347 + GA-rich Low_complexity Low_complexity 3 70 0 6 1056 355 279 28 19 chr9 61792209 61792315 -62283857 - PB1D7 SINE Alu 0 120 14 6 1056 220 333 26 13 chr9 61792567 61792643 -62283529 + ID_B1 SINE B4 56 132 -92 6 1056 270 0 0 0 chr9 61793121 61793151 -62283021 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1056 22 0 0 0 chr9 61793578 61793600 -62282572 + AT_rich Low_complexity Low_complexity 1 22 0 6 1056 241 232 0 28 chr9 61794884 61794955 -62281217 + T-rich Low_complexity Low_complexity 3 71 0 6 1056 248 155 48 79 chr9 61794957 61795020 -62281152 - PB1D7 SINE Alu 0 120 60 6 1056 321 219 0 40 chr9 61794965 61795041 -62281131 - ID_B1 SINE B4 -4 220 148 6 1056 351 0 0 0 chr9 61795098 61795137 -62281035 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1056 405 0 0 0 chr9 61795137 61795181 -62280991 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1056 312 276 13 26 chr9 61795181 61795259 -62280913 - ID4 SINE ID -4 79 3 6 1056 339 130 0 0 chr9 61796183 61796237 -62279935 + (T)n Simple_repeat Simple_repeat 1 54 0 6 1056 977 87 43 0 chr9 61796240 61796378 -62279794 - B1_Mus1 SINE Alu 0 148 5 6 1056 180 0 0 0 chr9 61796400 61796420 -62279752 + (C)n Simple_repeat Simple_repeat 1 20 0 7 1056 1963 229 166 53 chr9 61796424 61797163 -62279009 - Lx7 LINE L1 -211 7485 6663 7 1056 845 195 7 7 chr9 61797285 61797435 -62278737 - B1_Mur4 SINE Alu 0 150 1 7 1056 618 235 7 24 chr9 61797461 61797640 -62278532 + B3A SINE B2 12 179 -37 7 1056 23 78 0 0 chr9 61797657 61797708 -62278464 + AT_rich Low_complexity Low_complexity 1 51 0 7 1056 1039 82 15 0 chr9 61797708 61797843 -62278329 + B1_Mus1 SINE Alu 2 138 -10 7 1056 240 35 0 0 chr9 61797843 61797872 -62278300 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1056 234 103 77 0 chr9 61797873 61797912 -62278260 - B2_Mm2 SINE B2 -150 45 4 7 1056 637 229 87 44 chr9 61797974 61798157 -62278015 + ID_B1 SINE B4 32 222 -2 7 1056 779 215 14 0 chr9 61798174 61798318 -62277854 + B1_Mur2 SINE Alu 2 147 -2 7 1056 385 313 58 19 chr9 61798477 61798682 -62277490 - L1ME2 LINE L1 -305 5859 5647 7 1056 1255 181 28 0 chr9 61799178 61799393 -62276779 - URR1B DNA MER1_type 0 225 5 7 1056 280 319 0 0 chr9 61799665 61799734 -62276438 + RSINE1 SINE B4 2 70 -95 7 1056 451 244 0 0 chr9 61800533 61800615 -62275557 - URR1B DNA MER1_type -143 82 1 7 1056 773 242 52 38 chr9 61800647 61800658 -62275514 - ID_B1 SINE B4 0 224 214 7 1056 1241 34 0 14 chr9 61800658 61800806 -62275366 - B1_Mm SINE Alu 0 147 2 7 1056 773 242 52 38 chr9 61800806 61801004 -62275168 - ID_B1 SINE B4 -11 213 12 7 1056 568 285 115 22 chr9 61801746 61801972 -62274200 - B4A SINE B4 -7 285 39 7 1056 408 211 0 0 chr9 61803024 61803095 -62273077 - RSINE1 SINE B4 -86 79 9 7 1056 521 259 46 0 chr9 61803248 61803379 -62272793 - ID_B1 SINE B4 -54 170 34 7 1056 863 142 7 7 chr9 61803373 61803508 -62272664 + B1_Mur2 SINE Alu 13 147 -2 7 1056 278 214 18 0 chr9 61803536 61803592 -62272580 - ID SINE ID -167 57 1 7 1056 235 267 83 0 chr9 61804188 61804248 -62271924 + RSINE1 SINE B4 88 152 -13 7 1056 324 70 0 0 chr9 61804249 61804292 -62271880 + (CATA)n Simple_repeat Simple_repeat 1 43 0 7 1056 583 227 53 0 chr9 61804431 61804563 -62271609 - ID_B1 SINE B4 -8 216 78 7 1056 893 255 115 33 chr9 61804597 61804664 -62271508 + B4A SINE B4 8 73 -219 7 1056 3563 23 2 0 chr9 61804664 61805059 -62271113 - MTA_Mm LTR MaLR 0 396 1 7 1056 893 255 115 33 chr9 61805059 61805234 -62270938 + B4A SINE B4 74 270 -22 7 1056 350 209 30 0 chr9 61805280 61805414 -62270758 + (CA)n Simple_repeat Simple_repeat 2 139 0 7 1056 1264 40 0 0 chr9 61805575 61805723 -62270449 - B1_Mus1 SINE Alu 0 148 1 7 1056 260 292 0 103 chr9 61805730 61805837 -62270335 - PB1D10 SINE Alu -3 114 19 7 1056 400 297 69 48 chr9 61805976 61806121 -62270051 + MTEa LTR MaLR 1 148 -231 7 1056 1123 68 7 0 chr9 61806137 61806283 -62269889 + B1_Mus1 SINE Alu 2 148 0 7 1056 237 108 0 0 chr9 61806298 61806335 -62269837 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1056 381 70 0 0 chr9 61806593 61806650 -62269522 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 7 1056 4891 89 17 24 chr9 61806660 61807405 -62268767 + RMER17A LTR ERVK 1 740 -11 7 1056 392 0 21 0 chr9 61807419 61807467 -62268705 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1056 1190 212 175 15 chr9 61808326 61808651 -62267521 + MTEa LTR MaLR 3 379 0 7 1056 201 271 60 40 chr9 61808799 61808899 -62267273 - MER5A DNA MER1_type -58 131 30 7 1056 189 107 0 0 chr9 61809605 61809633 -62266539 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 7 1056 304 275 0 24 chr9 61810197 61810279 -62265893 + B1F SINE Alu 68 147 -2 7 1056 451 309 45 22 chr9 61810939 61811118 -62265054 - MIRb SINE MIR -63 205 23 7 1056 755 247 19 0 chr9 61812350 61812508 -62263664 + ID_B1 SINE B4 1 161 -63 7 1056 265 280 0 85 chr9 61812555 61812637 -62263535 + ID_B1 SINE B4 149 223 -1 7 1056 1375 102 16 0 chr9 61812640 61812826 -62263346 + B2_Mm2 SINE B2 2 190 -5 7 1056 468 0 0 0 chr9 61813822 61813874 -62262298 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1056 198 290 69 42 chr9 61815565 61815637 -62260535 - MIRm SINE MIR -106 170 97 7 1056 238 216 78 0 chr9 61815793 61815844 -62260328 + MTE2b LTR MaLR 1 55 -324 7 1056 442 155 0 20 chr9 61815857 61815887 -62260285 + polypyrimidine Low_complexity Low_complexity 72 100 0 7 1056 1512 68 16 0 chr9 61815887 61816078 -62260094 - B2_Mm2 SINE B2 0 195 2 7 1056 442 155 0 20 chr9 61816078 61816146 -62260026 + polypyrimidine Low_complexity Low_complexity 4 71 0 7 1056 861 282 141 44 chr9 61816153 61816450 -62259722 + MTE2b LTR MaLR 50 375 -4 7 1056 309 109 0 0 chr9 61816911 61816957 -62259215 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1056 366 357 72 13 chr9 61816961 61817118 -62259054 - MIR SINE MIR -89 187 14 7 1056 1032 192 29 29 chr9 61817415 61817619 -62258553 - URR1B DNA MER1_type -2 223 20 7 1056 463 287 94 47 chr9 61817727 61817939 -62258233 + B4 SINE B4 71 292 0 7 1056 404 226 145 17 chr9 61818435 61818552 -62257620 + B3 SINE B2 46 177 -39 7 1056 808 236 35 10 chr9 61818580 61818787 -62257385 + ID_B1 SINE B4 9 236 -56 7 1056 295 110 27 27 chr9 61818819 61818894 -62257278 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 7 1056 405 39 0 0 chr9 61819550 61819601 -62256571 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1056 360 0 0 0 chr9 61819601 61819640 -62256532 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1056 265 204 0 0 chr9 61820227 61820281 -62255891 + MER63D DNA AcHobo 330 383 -678 7 1056 221 361 55 9 chr9 61820839 61820948 -62255224 - L3 LINE CR1 -72 4417 4304 7 1056 308 197 48 84 chr9 61821407 61821419 -62254753 + PB1D7 SINE Alu 40 119 -1 7 1056 427 155 28 0 chr9 61821419 61821490 -62254682 + ID_B1 SINE B4 151 223 -1 7 1056 506 243 0 45 chr9 61821747 61821859 -62254313 - PB1D10 SINE Alu -9 108 2 7 1056 1128 86 113 11 chr9 61821885 61822062 -62254110 + B2_Mm2 SINE B2 1 195 0 7 1056 530 276 11 114 chr9 61822122 61822306 -62253866 - RSINE1 SINE B4 0 165 1 7 1056 286 315 161 0 chr9 61822687 61822817 -62253355 + MER2 DNA MER2_type 5 155 -190 7 1056 679 252 117 0 chr9 61822822 61823036 -62253136 + MER2 DNA MER2_type 101 339 -6 7 1056 930 185 120 0 chr9 61823272 61823472 -62252700 - ID_B1 SINE B4 0 224 1 7 1056 287 295 69 35 chr9 61823481 61823597 -62252575 - MIRb SINE MIR -56 212 93 7 1056 654 290 60 100 chr9 61824663 61824886 -62251286 + B4A SINE B4 2 220 -72 7 1056 855 188 29 0 chr9 61824886 61825024 -62251148 + B1_Mur1 SINE Alu 2 143 -6 7 1056 654 290 60 100 chr9 61825024 61825099 -62251073 + B4A SINE B4 221 288 -4 7 1056 320 355 69 30 chr9 61825286 61825489 -62250683 - MER20 DNA MER1_type -8 211 1 7 1056 471 295 0 0 chr9 61825499 61825611 -62250561 - PB1D7 SINE Alu -8 112 1 7 1056 780 175 8 0 chr9 61825667 61825787 -62250385 + RSINE1 SINE B4 5 125 -40 7 1056 417 86 0 0 chr9 61825787 61825845 -62250327 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1056 339 302 44 1 chr9 61826118 61826234 -62249938 + PB1D7 SINE Alu 17 134 -15 7 1056 1357 241 46 122 chr9 61826297 61826731 -62249441 - MTD LTR MaLR -14 405 5 7 1056 682 218 81 13 chr9 61826847 61826996 -62249176 + B3 SINE B2 1 159 -57 7 1056 716 154 103 0 chr9 61827141 61827277 -62248895 - B1_Mur4 SINE Alu 0 150 1 7 1056 303 205 33 98 chr9 61827195 61827287 -62248885 - MT2B2 LTR ERVL -344 240 155 7 1056 22 0 0 0 chr9 61827346 61827368 -62248804 + AT_rich Low_complexity Low_complexity 1 22 0 7 1056 755 223 125 0 chr9 61827389 61827573 -62248599 - ID_B1 SINE B4 -4 220 14 7 1056 245 308 0 37 chr9 61827504 61827585 -62248587 - BC1_Mm scRNA scRNA -73 79 2 7 1056 602 269 98 5 chr9 61827880 61828034 -62248138 + B3 SINE B2 5 171 -45 7 1056 510 17 0 0 chr9 61828034 61828093 -62248079 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 7 1056 602 269 98 5 chr9 61828093 61828132 -62248040 + B3 SINE B2 172 215 -1 7 1056 462 286 117 0 chr9 61828282 61828436 -62247736 - MER31A LTR ERV1 -141 344 173 7 1056 773 234 81 11 chr9 61828635 61828821 -62247351 + ID_B1 SINE B4 2 200 -24 7 1056 297 167 0 0 chr9 61828827 61828881 -62247291 + GA-rich Low_complexity Low_complexity 3 56 0 7 1056 180 77 0 0 chr9 61829940 61829966 -62246206 + (TGG)n Simple_repeat Simple_repeat 2 27 0 7 1056 792 214 139 0 chr9 61830174 61830347 -62245825 - ID_B1 SINE B4 -26 198 2 7 1056 442 245 152 23 chr9 61830347 61830564 -62245608 + MLT1B LTR MaLR 80 324 -66 7 1056 568 278 15 0 chr9 61830699 61830832 -62245340 - ID_B1 SINE B4 -6 218 84 7 1056 317 273 60 72 chr9 61831135 61831301 -62244871 + ORR1E LTR MaLR 75 238 -121 7 1056 830 114 120 15 chr9 61831370 61831503 -62244669 + B1_Mus1 SINE Alu 1 147 -1 7 1056 409 315 150 60 chr9 61831862 61831983 -62244189 + Zaphod DNA Tip100 2453 2579 -1452 7 1056 982 218 50 0 chr9 61831983 61832185 -62243987 - B3 SINE B2 -4 212 1 7 1056 409 315 150 60 chr9 61832185 61832509 -62243663 + Zaphod DNA Tip100 2580 2938 -1093 7 1056 797 208 0 26 chr9 61832684 61832837 -62243335 + B1_Mur2 SINE Alu 1 149 0 7 1056 518 220 280 0 chr9 61833077 61833245 -62242927 + B3 SINE B2 2 216 0 7 1056 24 0 0 0 chr9 61833250 61833274 -62242898 + AT_rich Low_complexity Low_complexity 1 24 0 7 1056 407 266 0 60 chr9 61833297 61833413 -62242759 + B1F2 SINE Alu 1 109 -40 7 1056 339 257 0 0 chr9 61833642 61833716 -62242456 - RSINE1 SINE B4 -45 120 47 7 1056 414 0 0 0 chr9 61833927 61833973 -62242199 + (TATG)n Simple_repeat Simple_repeat 1 46 0 7 1056 243 322 54 9 chr9 61834039 61834175 -62241997 + LTR16A LTR ERVL 312 454 -2 7 1056 741 241 128 5 chr9 61834313 61834501 -62241671 - ID_B1 SINE B4 -11 213 3 8 1056 413 198 250 0 chr9 61834584 61834700 -62241472 + B1_Mur4 SINE Alu 1 145 -5 8 1056 369 0 0 0 chr9 61835146 61835187 -62240985 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1056 867 263 78 19 chr9 61835203 61835474 -62240698 - B4 SINE B4 -5 287 1 8 1056 349 212 12 0 chr9 61836335 61836415 -62239757 + PB1D10 SINE Alu 1 81 -36 8 1056 904 182 65 40 chr9 61837073 61837273 -62238899 + ID_B1 SINE B4 7 211 -13 8 1056 216 0 0 0 chr9 61837273 61837297 -62238875 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1056 603 179 84 17 chr9 61837307 61837426 -62238746 - B1_Mur3 SINE Alu -8 141 15 8 1056 1159 68 0 0 chr9 61837446 61837593 -62238579 - B1_Mus2 SINE Alu 0 147 1 8 1056 858 266 96 32 chr9 61837704 61838012 -62238160 + MLT1A0 LTR MaLR 26 498 -7 8 1056 343 267 0 65 chr9 61838208 61838300 -62237872 + RSINE1 SINE B4 11 96 -69 8 1056 288 0 0 0 chr9 61838300 61838332 -62237840 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 8 1056 25 51 0 0 chr9 61838410 61838449 -62237723 + AT_rich Low_complexity Low_complexity 1 39 0 8 1056 270 0 0 0 chr9 61838535 61838565 -62237607 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1056 441 0 0 0 chr9 61838907 61838956 -62237216 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1056 279 71 0 0 chr9 61839002 61839044 -62237128 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1056 1282 252 36 81 chr9 61839566 61839959 -62236213 - MTE2a LTR MaLR -4 375 1 8 1056 923 256 14 19 chr9 61840053 61840268 -62235904 + ID_B1 SINE B4 8 221 -3 8 1056 1154 155 87 0 chr9 61840689 61840896 -62235276 + URR1A DNA MER1_type 2 226 0 8 1056 296 341 22 37 chr9 61840905 61841039 -62235133 + LTR48 LTR ERV1 5 136 -651 8 1056 234 0 0 0 chr9 61841325 61841351 -62234821 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1056 698 268 125 10 chr9 61841356 61841556 -62234616 - B4 SINE B4 -10 282 60 8 1056 447 287 82 15 chr9 61841546 61841708 -62234464 - ID_B1 SINE B4 -22 270 98 8 1056 355 258 43 0 chr9 61841807 61841900 -62234272 - ID_B1 SINE B4 -126 98 2 8 1056 495 0 0 0 chr9 61841955 61842010 -62234162 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1056 195 69 0 0 chr9 61842010 61842038 -62234134 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1056 779 224 16 22 chr9 61842224 61842407 -62233765 + B3A SINE B2 1 182 -16 8 1056 244 269 167 29 chr9 61843334 61843472 -62232700 + LTR82B Low_complexity ERVL 491 647 -183 8 1056 402 333 14 14 chr9 61843580 61843723 -62232449 - MER104 DNA Tc2 -2 179 37 8 1056 623 248 118 0 chr9 61843736 61843897 -62232275 + B4A SINE B4 1 180 -112 8 1056 1063 176 311 0 chr9 61843900 61844189 -62231983 + MTE2b LTR MaLR 1 379 0 8 1056 903 144 80 11 chr9 61844316 61844349 -62231823 - B2_Mm1t SINE B2 -6 187 143 8 1056 266 67 22 0 chr9 61844349 61844394 -62231778 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1056 1044 78 0 0 chr9 61844394 61844535 -62231637 - B2_Mm2 SINE B2 -54 141 1 8 1056 821 110 158 25 chr9 61844782 61844940 -62231232 + B2_Mm2 SINE B2 1 179 -16 8 1056 862 101 31 0 chr9 61844947 61845076 -62231096 + B1_Mus1 SINE Alu 10 142 -6 8 1056 260 298 53 11 chr9 61845105 61845200 -62230972 + L1M3 LINE L1 5372 5470 -710 8 1056 648 282 24 6 chr9 61845262 61845465 -62230707 + B4A SINE B4 63 282 -10 8 1056 261 0 0 0 chr9 61845602 61845631 -62230541 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1056 228 297 165 0 chr9 61846056 61846147 -62230025 + Charlie9 DNA MER1_type 10 115 -2642 8 1056 204 97 0 0 chr9 61846210 61846241 -62229931 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1056 279 239 0 57 chr9 61846603 61846727 -62229445 + (CAGAC)n Simple_repeat Simple_repeat 1 117 0 8 1056 473 214 42 8 chr9 61848340 61848458 -62227714 + L1MC2 LINE L1 6058 6179 -165 8 1056 376 192 64 0 chr9 61848478 61848556 -62227616 + ID_B1 SINE B4 86 168 -56 8 1056 366 208 47 103 chr9 61848556 61848585 -62227587 + PB1D10 SINE Alu 5 105 -12 8 1056 772 203 77 22 chr9 61848717 61848898 -62227274 + ID_B1 SINE B4 29 219 -5 8 1056 1373 35 0 6 chr9 61849029 61849201 -62226971 + (TTTCC)n Simple_repeat Simple_repeat 4 174 0 8 1056 423 0 0 0 chr9 61849202 61849249 -62226923 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 8 1056 288 0 0 0 chr9 61849249 61849280 -62226892 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 1056 1104 49 14 0 chr9 61849299 61849442 -62226730 - B1_Mus1 SINE Alu -1 147 3 8 1056 385 231 265 0 chr9 61849694 61849811 -62226361 + RSINE1 SINE B4 2 149 -16 8 1056 315 0 0 0 chr9 61850266 61850301 -62225871 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 8 1056 600 276 6 24 chr9 61850655 61850822 -62225350 - RSINE1 SINE B4 0 165 2 8 1056 450 250 52 91 chr9 61850832 61850986 -62225186 + Tigger7 DNA MER2_type 2344 2491 0 8 1056 180 0 0 0 chr9 61851679 61851699 -62224473 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1056 312 242 71 0 chr9 61852663 61852762 -62223410 + PB1D10 SINE Alu 4 109 -8 8 1056 363 23 0 0 chr9 61852992 61853036 -62223136 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 8 1056 180 0 0 0 chr9 61853065 61853085 -62223087 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1056 1122 54 0 13 chr9 61853103 61853253 -62222919 - B1_Mus1 SINE Alu 0 148 1 8 1056 1173 154 31 46 chr9 61853257 61853582 -62222590 + URR1B DNA MER1_type 1 225 0 8 1056 1285 104 10 5 chr9 61853667 61853861 -62222311 - B2_Mm2 SINE B2 0 195 1 8 1056 855 104 59 7 chr9 61853898 61854034 -62222138 + B1_Mur4 SINE Alu 7 149 -1 8 1056 1119 96 0 0 chr9 61854313 61854480 -62221692 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 8 1056 252 0 0 0 chr9 61856166 61856194 -62219978 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1056 452 233 222 26 chr9 61856721 61857000 -62219172 + MTEb LTR MaLR 19 351 -28 8 1056 906 221 19 29 chr9 61857029 61857225 -62218947 + B3 SINE B2 8 203 -13 8 1056 3105 53 2 5 chr9 61857225 61857625 -62218547 + MTB LTR MaLR 2 400 0 8 1056 906 221 19 29 chr9 61857625 61857638 -62218534 + B3 SINE B2 204 215 -1 8 1056 288 53 0 0 chr9 61858050 61858088 -62218084 + (TTG)n Simple_repeat Simple_repeat 2 39 0 8 1056 447 311 105 62 chr9 61858133 61858390 -62217782 + B4A SINE B4 3 270 -22 8 1056 351 0 0 0 chr9 61858424 61858463 -62217709 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1056 180 0 0 0 chr9 61858472 61858492 -62217680 + (GGA)n Simple_repeat Simple_repeat 3 22 0 8 1056 3109 181 42 15 chr9 61859040 61859357 -62216815 + Lx5 LINE L1 6416 6739 -311 8 1056 495 60 0 0 chr9 61859357 61859424 -62216748 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1056 3109 181 42 15 chr9 61859424 61859550 -62216622 + Lx5 LINE L1 6740 6867 -183 8 1056 1091 42 0 40 chr9 61859550 61859698 -62216474 + B1_Mus1 SINE Alu 1 142 -6 8 1056 3109 181 42 15 chr9 61859698 61859870 -62216302 + Lx5 LINE L1 6868 7048 -2 8 1056 346 127 0 0 chr9 61859880 61859935 -62216237 + ORR1C1 LTR MaLR 324 378 0 8 1056 231 222 24 12 chr9 61859996 61860078 -62216094 + (TA)n Simple_repeat Simple_repeat 1 83 0 8 1056 661 197 0 11 chr9 61862038 61862430 -62213742 + (CA)n Simple_repeat Simple_repeat 1 387 0 8 1056 751 233 16 75 chr9 61862560 61862746 -62213426 - B3A SINE B2 -15 183 9 8 1056 928 178 120 0 chr9 61863586 61863777 -62212395 + B3 SINE B2 3 216 0 8 1056 414 39 0 0 chr9 61863792 61863844 -62212328 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1056 1052 194 30 5 chr9 61863946 61864143 -62212029 + ID_B1 SINE B4 23 224 0 8 1056 347 246 99 40 chr9 61864171 61864323 -62211849 + L1MC LINE L1 5273 5433 -2449 8 1056 438 338 19 6 chr9 61864334 61864492 -62211680 + RSINE1 SINE B4 3 162 -3 8 1056 25 0 0 0 chr9 61864518 61864543 -62211629 + AT_rich Low_complexity Low_complexity 1 25 0 8 1056 365 315 0 21 chr9 61864545 61864631 -62211541 + PB1D10 SINE Alu 19 104 -13 8 1056 288 0 0 0 chr9 61864631 61864663 -62211509 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1056 312 353 35 0 chr9 61864663 61864692 -62211480 + B1F1 SINE Alu 108 137 -12 8 1056 295 232 60 24 chr9 61865628 61865712 -62210460 + ORR1E LTR MaLR 15 101 -258 8 1057 680 264 11 11 chr9 61866254 61866430 -62209742 + ID_B1 SINE B4 49 224 0 8 1057 2482 58 36 3 chr9 61866785 61867116 -62209056 - ORR1A1 LTR MaLR 0 346 5 8 1057 388 260 21 0 chr9 61867735 61867831 -62208341 + PB1D10 SINE Alu 14 111 -6 8 1057 507 273 150 7 chr9 61867861 61868001 -62208171 - RSINE1 SINE B4 -2 163 4 8 1057 426 316 138 17 chr9 61868044 61868340 -62207832 + L1MB3 LINE L1 5592 5923 -260 8 1057 310 222 28 0 chr9 61868395 61868467 -62207705 + 7SK RNA RNA 166 239 -92 8 1057 367 309 144 0 chr9 61868682 61868863 -62207309 + L1MB3 LINE L1 5923 6129 -54 8 1057 390 278 280 28 chr9 61868876 61869094 -62207078 + B4 SINE B4 2 274 -18 8 1057 369 93 0 0 chr9 61869134 61869188 -62206984 + (CATA)n Simple_repeat Simple_repeat 4 57 0 8 1057 1370 142 5 9 chr9 61870048 61870269 -62205903 + URR1A DNA MER1_type 7 226 0 8 1057 258 261 43 14 chr9 61870283 61870353 -62205819 + MER20 DNA MER1_type 7 78 -141 8 1057 273 286 44 71 chr9 61870321 61870363 -62205809 + MT2B LTR ERVL 128 166 -435 8 1057 335 234 112 41 chr9 61870363 61870461 -62205711 + PB1D9 SINE Alu 1 105 -15 8 1057 773 230 56 25 chr9 61870451 61870647 -62205525 + B3 SINE B2 13 214 -2 8 1057 315 85 0 0 chr9 61870651 61870698 -62205474 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1057 234 313 110 10 chr9 61870734 61870834 -62205338 + MER20 DNA MER1_type 109 218 -1 8 1057 281 217 76 41 chr9 61870839 61870937 -62205235 - MIRc SINE MIR -52 156 48 9 1057 387 0 0 0 chr9 61871145 61871188 -62204984 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1057 279 173 0 0 chr9 61872515 61872567 -62203605 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1057 401 202 13 0 chr9 61873285 61873364 -62202808 + RSINE1 SINE B4 3 82 -83 9 1057 445 231 47 0 chr9 61873825 61873994 -62202178 + GA-rich Low_complexity Low_complexity 4 180 0 9 1057 180 0 0 0 chr9 61874187 61874207 -62201965 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1057 750 78 0 0 chr9 61875485 61875600 -62200572 + (TC)n Simple_repeat Simple_repeat 2 116 0 9 1057 405 0 0 0 chr9 61875600 61875644 -62200528 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1057 376 276 11 11 chr9 61875644 61875732 -62200440 - B4 SINE B4 -124 168 81 9 1057 405 0 0 0 chr9 61875735 61875780 -62200392 + (TC)n Simple_repeat Simple_repeat 2 46 0 9 1057 396 167 205 27 chr9 61875783 61875942 -62200230 - B3A SINE B2 -44 172 1 9 1057 352 222 36 24 chr9 61875949 61876032 -62200140 - B4 SINE B4 -205 87 4 9 1057 201 33 100 0 chr9 61876233 61876263 -62199909 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 9 1057 684 232 23 25 chr9 61876669 61876882 -62199290 + B3A SINE B2 2 212 -4 9 1057 200 226 17 102 chr9 61877021 61877080 -62199092 - MIRm SINE MIR -173 103 50 9 1057 423 248 120 7 chr9 61878151 61878293 -62197879 + RSINE1 SINE B4 4 161 -4 9 1057 217 308 19 0 chr9 61878337 61878389 -62197783 + B1F2 SINE Alu 9 61 -88 9 1057 246 207 0 0 chr9 61878400 61878458 -62197714 + GA-rich Low_complexity Low_complexity 4 61 0 9 1057 2772 180 47 18 chr9 61878928 61879487 -62196685 + RMER15 LTR ERVL 1 575 0 9 1057 229 218 204 19 chr9 61880024 61880127 -62196045 + B4A SINE B4 1 122 -170 9 1057 2202 91 74 37 chr9 61880152 61880505 -62195667 + ORR1B2 LTR MaLR 2 367 0 9 1057 549 55 0 0 chr9 61880629 61880702 -62195470 + (CATATA)n Simple_repeat Simple_repeat 1 73 0 9 1057 317 306 21 50 chr9 61881136 61881277 -62194895 - MLT1A1 LTR MaLR 0 408 272 9 1057 239 212 44 29 chr9 61881438 61881506 -62194666 - ORR1E LTR MaLR -225 134 66 9 1057 516 299 38 102 chr9 61881669 61881968 -62194204 + ID_B1 SINE B4 1 292 0 9 1057 433 191 63 11 chr9 61881996 61882091 -62194081 - PB1D10 SINE Alu -8 109 10 9 1057 288 189 42 0 chr9 61883461 61883536 -62192636 + PB1D9 SINE Alu 33 115 -34 9 1057 448 146 42 0 chr9 61883562 61883658 -62192514 + C-rich Low_complexity Low_complexity 5 104 0 9 1057 1671 203 65 8 chr9 61883663 61883764 -62192408 + MTD LTR MaLR 13 112 -307 9 1057 216 0 0 0 chr9 61883764 61883788 -62192384 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1057 1671 203 65 8 chr9 61883788 61884058 -62192114 + MTD LTR MaLR 113 404 -15 9 1057 1769 188 52 12 chr9 61885013 61885416 -62190756 + MTD LTR MaLR 1 419 0 9 1057 1038 243 43 4 chr9 61885458 61885737 -62190435 - B4A SINE B4 -12 280 3 9 1057 284 282 47 0 chr9 61885737 61885812 -62190360 - PB1D10 SINE Alu -36 81 3 9 1057 246 174 0 0 chr9 61886413 61886459 -62189713 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1057 787 267 14 19 chr9 61886461 61886675 -62189497 - ID_B1 SINE B4 -10 214 2 9 1057 531 332 28 1 chr9 61886814 61887010 -62189162 + MLT1D LTR MaLR 302 676 -4 9 1057 287 276 96 7 chr9 61887048 61887183 -62188989 - MER5A DNA MER1_type -27 162 16 9 1057 611 158 50 8 chr9 61887818 61887952 -62188220 + B1_Mur1 SINE Alu 1 131 -16 9 1057 824 150 113 0 chr9 61888751 61888884 -62187288 - B1_Mur3 SINE Alu -1 148 1 9 1057 22 0 0 0 chr9 61889004 61889026 -62187146 + AT_rich Low_complexity Low_complexity 1 22 0 9 1057 421 306 70 80 chr9 61889046 61889259 -62186913 - B4 SINE B4 0 292 82 9 1057 923 199 118 5 chr9 61889271 61889458 -62186714 - B3 SINE B2 -7 209 2 9 1057 797 228 104 108 chr9 61889477 61889920 -62186252 - RMER4A LTR ERVK -6 460 20 9 1057 364 303 0 33 chr9 61889939 61890031 -62186141 - RSINE1 SINE B4 -75 90 2 9 1057 249 268 14 14 chr9 61890040 61890112 -62186060 + Zaphod DNA Tip100 970 1041 -2990 9 1057 635 242 82 32 chr9 61890058 61890330 -62185842 - MTD LTR MaLR -99 322 19 9 1057 488 294 80 59 chr9 61890394 61890504 -62185668 - L1MA9 LINE L1 -165 6147 6029 9 1057 677 289 25 0 chr9 61890504 61890663 -62185509 - RSINE1 SINE B4 0 165 3 9 1057 488 294 80 59 chr9 61890663 61890838 -62185334 - L1MA9 LINE L1 -284 6028 5856 9 1057 222 37 0 0 chr9 61890950 61890977 -62185195 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 9 1057 264 309 51 10 chr9 61890977 61891075 -62185097 - PB1D10 SINE Alu -9 108 7 9 1057 461 290 45 6 chr9 61890998 61891154 -62185018 - ID_B1 SINE B4 -58 166 5 9 1057 423 188 59 0 chr9 61891164 61891249 -62184923 - L1MA9 LINE L1 -528 5772 5683 9 1057 1241 50 0 0 chr9 61891251 61891391 -62184781 + B1_Mus2 SINE Alu 2 141 -6 9 1057 186 71 0 0 chr9 61891392 61891420 -62184752 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9 1057 390 246 23 54 chr9 61891996 61892125 -62184047 - MTC LTR MaLR -20 401 277 9 1057 962 67 0 123 chr9 61892387 61892541 -62183631 - B1_Mus1 SINE Alu -12 136 2 9 1057 1819 21 0 0 chr9 61892582 61892775 -62183397 + B2_Mm1a SINE B2 1 193 0 9 1057 215 31 31 0 chr9 61892913 61892945 -62183227 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 9 1057 225 94 0 0 chr9 61893397 61893429 -62182743 + (CCA)n Simple_repeat Simple_repeat 1 32 0 9 1057 218 286 0 0 chr9 61893429 61893478 -62182694 - PB1 SINE Alu -12 115 67 9 1057 1254 112 0 0 chr9 61893542 61893841 -62182331 + (TTCC)n Simple_repeat Simple_repeat 1 299 0 9 1057 671 245 64 81 chr9 61894153 61894450 -62181722 - RLTR9A LTR ERVK 0 368 77 9 1057 324 64 0 0 chr9 61894506 61894553 -62181619 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 1057 180 0 0 0 chr9 61894553 61894573 -62181599 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1057 555 153 89 9 chr9 61894573 61894685 -62181487 - B2_Mm2 SINE B2 -17 178 58 9 1057 257 204 0 20 chr9 61894903 61894953 -62181219 - ORSL DNA Tip100 -195 80 32 9 1057 186 71 0 0 chr9 61895191 61895219 -62180953 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1057 996 59 1 3 chr9 61895219 61895358 -62180814 - B1_Mus1 SINE Alu 0 149 13 9 1057 322 267 52 95 chr9 61895490 61895517 -62180655 - PB1D10 SINE Alu -2 115 5 9 1057 347 244 56 34 chr9 61895517 61895606 -62180566 - ID_B1 SINE B4 -48 176 86 9 1057 378 283 40 10 chr9 61895736 61895836 -62180336 - B1F SINE Alu -17 103 1 9 1057 949 87 235 20 chr9 61895849 61896002 -62180170 - B2_Mm2 SINE B2 -8 187 2 9 1057 1311 113 0 36 chr9 61896011 61896204 -62179968 - B2_Mm2 SINE B2 -9 186 1 9 1057 312 143 0 39 chr9 61896341 61896392 -62179780 - HAL1-3A_ME LINE L1 -835 2023 1975 9 1057 574 186 14 0 chr9 61896392 61896537 -62179635 + (TG)n Simple_repeat Simple_repeat 2 148 0 9 1057 712 244 187 94 chr9 61896538 61896805 -62179367 - B4 SINE B4 0 292 1 9 1057 499 219 163 0 chr9 61896851 61896974 -62179198 - B3 SINE B2 0 216 74 9 1057 586 233 0 33 chr9 61897919 61898039 -62178133 + ID_B1 SINE B4 86 201 -23 9 1057 378 0 0 0 chr9 61899139 61899181 -62176991 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1057 904 207 84 20 chr9 61899248 61899450 -62176722 + B3 SINE B2 2 216 0 9 1057 344 22 22 0 chr9 61899466 61899511 -62176661 + (CATA)n Simple_repeat Simple_repeat 3 48 0 9 1057 642 185 197 0 chr9 61899515 61899693 -62176479 - B4A SINE B4 -78 214 2 9 1057 609 168 42 0 chr9 61899707 61899826 -62176346 - URR1A DNA MER1_type -55 171 48 9 1057 867 193 0 0 chr9 61900357 61900497 -62175675 + B1_Mur1 SINE Alu 1 140 -9 9 1057 210 37 0 0 chr9 61900520 61900547 -62175625 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1057 954 268 35 56 chr9 61900981 61901266 -62174906 - B4A SINE B4 -13 279 1 9 1057 27 0 0 0 chr9 61901331 61901358 -62174814 + AT_rich Low_complexity Low_complexity 1 27 0 9 1057 594 209 241 0 chr9 61901358 61901516 -62174656 - B3A SINE B2 -1 197 2 9 1057 261 183 0 0 chr9 61901553 61901613 -62174559 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 1057 588 176 0 10 chr9 61901653 61901756 -62174416 - B3 SINE B2 -110 106 5 9 1057 908 223 16 6 chr9 61901762 61901961 -62174211 - B3A SINE B2 -3 213 9 9 1057 2472 149 60 20 chr9 61902142 61902654 -62173518 - Lx5 LINE L1 -989 6061 5525 9 1057 2588 236 113 93 chr9 61902644 61903619 -62172553 + Lx5 LINE L1 6053 7046 -4 9 1057 905 290 138 40 chr9 61903718 61904066 -62172106 + MLT1B LTR MaLR 1 382 -8 9 1057 21 57 0 0 chr9 61908871 61908906 -62167266 + AT_rich Low_complexity Low_complexity 1 35 0 9 1057 289 288 153 18 chr9 61909193 61909363 -62166809 - MIR SINE MIR -12 250 58 9 1057 187 303 131 34 chr9 61909953 61910100 -62166072 - MIRb SINE MIR -45 223 53 9 1057 210 154 0 0 chr9 61910425 61910464 -62165708 + T-rich Low_complexity Low_complexity 1 39 0 9 1057 1257 55 7 0 chr9 61910465 61910611 -62165561 - B1_Mus2 SINE Alu 0 147 1 9 1057 1220 253 148 65 chr9 61911482 61912535 -62163637 + L1MA9 LINE L1 5073 6209 -103 9 1057 368 298 24 47 chr9 61912538 61912665 -62163507 - B3A SINE B2 -1 197 74 9 1057 443 150 98 20 chr9 61912699 61912801 -62163371 + L1MA9 LINE L1 6203 6312 0 9 1057 5905 124 35 8 chr9 61913059 61913987 -62162185 + L1_Mur2 LINE L1 3347 4299 -1578 9 1057 397 218 65 65 chr9 61913987 61914080 -62162092 + ID_B1 SINE B4 119 211 -13 1 1057 216 158 0 0 chr9 61914080 61914118 -62162054 + (TCTG)n Simple_repeat Simple_repeat 4 41 0 1 1057 360 273 11 0 chr9 61914219 61914307 -62161865 - PB1D10 SINE Alu -5 112 24 1 1057 270 0 0 0 chr9 61915758 61915788 -62160384 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1057 328 224 17 0 chr9 61915797 61915855 -62160317 + ID4 SINE ID 16 74 -9 1 1057 304 250 27 27 chr9 61915855 61915871 -62160301 + ID SINE ID 16 89 -135 1 1057 26 0 0 0 chr9 61917259 61917285 -62158887 + AT_rich Low_complexity Low_complexity 1 26 0 1 1057 316 342 0 0 chr9 61917434 61917513 -62158659 - ID4_ SINE ID -2 81 3 1 1057 376 246 48 56 chr9 61918602 61918685 -62157487 - MER119 DNA MER1_type 0 583 497 1 1057 1020 95 72 7 chr9 61918685 61918823 -62157349 + B1_Mur4 SINE Alu 1 147 -3 1 1057 376 246 48 56 chr9 61918823 61918864 -62157308 - MER119 DNA MER1_type -87 496 460 1 1057 341 279 107 61 chr9 61918874 61919137 -62157035 + L2 LINE L2 2159 2433 -986 1 1057 358 293 77 71 chr9 61919231 61919400 -62156772 + L2 LINE L2 2664 2833 -586 1 1057 325 309 92 56 chr9 61919485 61919735 -62156437 + BLACKJACK DNA AcHobo 575 833 -2111 1 1057 688 212 165 21 chr9 61919811 61919999 -62156173 - B3A SINE B2 0 216 2 1 1057 229 323 0 0 chr9 61920948 61921010 -62155162 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1057 811 261 21 31 chr9 61921053 61921247 -62154925 - B3 SINE B2 -24 192 1 1 1057 223 206 159 0 chr9 61921628 61921691 -62154481 + RSINE1 SINE B4 56 128 -37 1 1057 299 263 53 0 chr9 61922071 61922147 -62154025 + PB1D10 SINE Alu 33 112 -5 1 1057 189 0 0 0 chr9 61922428 61922449 -62153723 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1 1057 223 358 128 0 chr9 61922985 61923094 -62153078 + L2a LINE L2 3013 3135 -291 1 1057 278 358 0 21 chr9 61923178 61923275 -62152897 + L2a LINE L2 3330 3424 -2 1 1057 357 244 58 0 chr9 61923726 61923812 -62152360 + PB1D10 SINE Alu 9 99 -18 1 1057 507 210 40 0 chr9 61924109 61924209 -62151963 - B1_Mur1 SINE Alu -25 124 21 1 1057 25 31 0 0 chr9 61924326 61924358 -62151814 + AT_rich Low_complexity Low_complexity 1 32 0 1 1057 7310 95 67 30 chr9 61924872 61925952 -62150220 - Lx2 LINE L1 -1 6996 5877 1 1057 795 145 119 22 chr9 61925976 61926110 -62150062 + B1_Mur4 SINE Alu 4 150 0 1 1057 2049 307 126 24 chr9 61926211 61927159 -62149013 + Lx8 LINE L1 6428 7471 -2 1 1057 904 283 73 97 chr9 61927233 61927902 -62148270 - L1MC5 LINE L1 -590 7371 6719 1 1057 504 0 0 0 chr9 61927953 61928009 -62148163 + (CTGTG)n Simple_repeat Simple_repeat 3 58 0 1 1057 681 330 98 65 chr9 61928133 61928489 -62147683 - MLT1J LTR MaLR -75 437 70 1 1057 24 0 0 0 chr9 61928679 61928703 -62147469 + AT_rich Low_complexity Low_complexity 1 24 0 1 1057 1354 116 16 10 chr9 61929898 61930090 -62146082 - B2_Mm2 SINE B2 0 195 3 1 1057 342 217 315 0 chr9 61930126 61930218 -62145954 - B1_Mus2 SINE Alu -15 132 12 1 1057 212 283 0 0 chr9 61930183 61930229 -62145943 - ID_B1 SINE B4 -97 127 82 1 1057 28 29 0 0 chr9 61930804 61930839 -62145333 + AT_rich Low_complexity Low_complexity 1 35 0 1 1057 849 177 28 0 chr9 61931301 61931442 -62144730 - B1_Mus2 SINE Alu -1 146 2 1 1057 225 196 161 0 chr9 61931758 61931814 -62144358 + L1M4 LINE L1 5738 5802 -372 1 1057 2236 81 32 0 chr9 61931852 61932161 -62144011 + ORR1A2 LTR MaLR 1 319 -8 1 1057 24 0 0 0 chr9 61932331 61932355 -62143817 + AT_rich Low_complexity Low_complexity 1 24 0 1 1057 500 88 0 0 chr9 61932360 61932428 -62143744 + B2_Mm2 SINE B2 16 83 -112 1 1057 5267 176 31 102 chr9 61932601 61933744 -62142428 + RMER1B Other Other 1 1061 -5 1 1057 428 314 93 19 chr9 61934198 61934412 -62141760 - MER2 DNA MER2_type -26 319 90 1 1057 386 264 76 11 chr9 61934535 61934627 -62141545 - PB1D10 SINE Alu -19 98 1 1 1057 297 0 0 0 chr9 61934932 61934965 -62141207 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1 1057 831 87 20 13 chr9 61934965 61935113 -62141059 - RMER17B LTR ERVK -494 464 316 1 1057 25 0 0 0 chr9 61935118 61935143 -62141029 + AT_rich Low_complexity Low_complexity 1 25 0 1 1057 625 101 71 0 chr9 61935148 61935247 -62140925 - B1_Mur4 SINE Alu -3 147 42 1 1057 374 316 73 0 chr9 61935346 61935482 -62140690 - MER58A DNA MER1_type -78 146 1 1 1057 738 271 41 0 chr9 61935611 61935781 -62140391 - ID_B1 SINE B4 -14 210 34 1 1057 2591 55 0 0 chr9 61935851 61936160 -62140012 + L1Md_F2 LINE L1 6272 6580 -2 1 1057 509 324 67 27 chr9 61936355 61936580 -62139592 + L1MD2 LINE L1 24 257 -6290 1 1057 225 0 0 0 chr9 61936640 61936665 -62139507 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1057 513 333 41 73 chr9 61936703 61936949 -62139223 + L1MD2 LINE L1 450 687 -5860 1 1057 646 238 166 18 chr9 61936993 61937216 -62138956 - Tigger5 DNA MER2_type -1 2405 2150 1 1057 843 257 33 29 chr9 61937271 61937556 -62138616 + MT2A LTR ERVL 316 594 -7 1 1057 281 288 0 59 chr9 61937602 61937687 -62138485 + ID_B1 SINE B4 78 157 -67 1 1057 351 339 0 18 chr9 61937615 61937729 -62138443 + PB1D10 SINE Alu 6 117 0 1 1057 216 0 0 0 chr9 61937754 61937778 -62138394 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1057 760 285 60 41 chr9 61937794 61937889 -62138283 + B4A SINE B4 2 99 -193 1 1057 1451 89 16 0 chr9 61937889 61938079 -62138093 + B2_Mm1t SINE B2 1 193 0 1 1057 760 285 60 41 chr9 61938079 61938250 -62137922 + B4A SINE B4 100 273 -19 1 1057 3252 225 82 28 chr9 61939555 61940478 -62135694 + RCHARR1 DNA MER1_type 1 973 -1 1 1057 1011 281 54 22 chr9 61940960 61941236 -62134936 + B4 SINE B4 2 286 -6 1 1057 297 0 0 0 chr9 61941244 61941277 -62134895 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1057 3492 38 2 8 chr9 61941335 61941733 -62134439 - MTA_Mm LTR MaLR 0 396 1 1 1057 205 188 78 0 chr9 61941833 61941897 -62134275 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 1 1057 209 87 43 21 chr9 61941841 61941888 -62134284 + T-rich Low_complexity Low_complexity 3 50 0 1 1057 456 216 179 8 chr9 61942082 61942199 -62133973 - B1_Mur1 SINE Alu 0 149 13 1 1057 379 273 45 0 chr9 61942414 61942502 -62133670 - B1_Mur2 SINE Alu -49 100 9 1 1057 524 15 0 15 chr9 61942683 61942749 -62133423 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 1 1057 191 362 128 0 chr9 61943377 61943471 -62132701 + MER5B DNA MER1_type 6 111 -67 1 1057 189 265 238 12 chr9 61943530 61943614 -62132558 + MIR SINE MIR 40 142 -66 1 1057 258 227 61 0 chr9 61944037 61944103 -62132069 - B1F1 SINE Alu -50 99 30 1 1057 786 319 75 35 chr9 61944340 61944687 -62131485 + MLT1F2 LTR MaLR 8 368 -192 1 1057 275 300 12 0 chr9 61944713 61944793 -62131379 - ID4_ SINE ID 0 83 3 1 1057 182 238 311 0 chr9 61944838 61944960 -62131212 + L2 LINE L2 2707 2866 -553 1 1057 527 312 106 11 chr9 61945555 61945743 -62130429 + B4A SINE B4 2 207 -85 1 1057 23 78 0 0 chr9 61945960 61946011 -62130161 + AT_rich Low_complexity Low_complexity 1 51 0 1 1057 198 0 0 0 chr9 61946392 61946414 -62129758 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1057 182 33 67 0 chr9 61947012 61947042 -62129130 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1057 471 258 40 16 chr9 61947478 61947604 -62128568 + B1F SINE Alu 6 134 -15 1 1057 189 304 97 9 chr9 61948072 61948185 -62127987 + MIRb SINE MIR 107 229 -39 1 1057 5777 59 0 12 chr9 61948484 61949216 -62126956 - L1_Mus1 LINE L1 0 6567 5845 1 1057 23 55 0 18 chr9 61949508 61949539 -62126633 + AT_rich Low_complexity Low_complexity 1 31 0 1 1057 4425 144 44 29 chr9 61949539 61949952 -62126220 - Lx5 LINE L1 -3 7047 6636 1 1057 3156 38 30 15 chr9 61949952 61950357 -62125815 + RLTR10A LTR ERVK 1 411 0 1 1057 4425 144 44 29 chr9 61950357 61950699 -62125473 - Lx5 LINE L1 -415 6635 6281 1 1057 23 55 0 18 chr9 61950699 61950722 -62125450 + AT_rich Low_complexity Low_complexity 1 23 0 1 1057 459 0 0 0 chr9 61950738 61950789 -62125383 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1057 629 149 215 0 chr9 61950796 61950917 -62125255 - B1_Mus2 SINE Alu 0 147 1 1 1057 209 290 16 16 chr9 61951314 61951377 -62124795 - MIR SINE MIR -94 114 52 1 1057 1048 135 222 0 chr9 61951960 61952145 -62124027 + URR1A DNA MER1_type 1 226 0 1 1057 5539 57 2 89 chr9 61952163 61952987 -62123185 + L1Md_F2 LINE L1 5830 6582 0 1 1057 2671 40 68 0 chr9 61953093 61953417 -62122755 + ORR1A1 LTR MaLR 1 346 0 1 1057 699 163 76 23 chr9 61953890 61954022 -62122150 - B1_Mur2 SINE Alu -2 147 9 1 1057 214 246 182 25 chr9 61954265 61954386 -62121786 + L2 LINE L2 520 659 -2760 1 1057 370 286 57 0 chr9 61954752 61954857 -62121315 - B1F1 SINE Alu -35 114 4 1 1057 833 304 206 30 chr9 61954998 61956119 -62120053 + L2 LINE L2 1314 2631 -788 1 1057 1001 219 0 0 chr9 61956128 61956306 -62119866 + B3 SINE B2 38 215 -1 1 1057 356 324 52 33 chr9 61956392 61956603 -62119569 + L1MD2 LINE L1 6049 6263 -96 1 1057 439 200 108 13 chr9 61956691 61956838 -62119334 + RMER17B LTR ERVK 296 445 -461 1 1057 405 0 0 0 chr9 61956838 61956883 -62119289 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1057 439 196 114 7 chr9 61956883 61956932 -62119240 + RMER17B LTR ERVK 399 459 -499 1 1057 379 271 221 0 chr9 61957247 61957369 -62118803 + B1_Mur2 SINE Alu 1 149 0 1 1057 348 295 35 9 chr9 61957747 61957860 -62118312 - PB1D10 SINE Alu -1 116 1 1 1057 337 328 41 0 chr9 61957888 61958010 -62118162 - MIR SINE MIR -30 232 106 1 1057 502 327 6 19 chr9 61958126 61958288 -62117884 + RSINE1 SINE B4 5 164 -1 1 1057 323 290 44 30 chr9 61958418 61958553 -62117619 - L1M LINE L1 -732 5392 5256 1 1057 328 313 72 81 chr9 61958582 61958818 -62117354 + L1MD LINE L1 5595 5828 -414 1 1057 1749 184 94 23 chr9 61958838 61959222 -62116950 + MTD LTR MaLR 1 411 -8 1 1057 455 289 93 69 chr9 61959318 61959682 -62116490 + L1ME1 LINE L1 5807 6179 0 1 1057 760 200 146 62 chr9 61959878 61960070 -62116102 - B3 SINE B2 -8 208 1 1 1057 847 173 50 0 chr9 61960086 61960225 -62115947 - B1_Mus1 SINE Alu 0 148 3 1 1057 2157 168 43 18 chr9 61960281 61960675 -62115497 + MTB_Mm LTR MaLR 4 407 0 1 1057 775 146 16 0 chr9 61961007 61961130 -62115042 + B1_Mus1 SINE Alu 3 127 -21 1 1057 297 183 167 42 chr9 61961405 61961525 -62114647 + L1MC4a LINE L1 7738 7841 -41 1 1057 304 191 40 101 chr9 61961528 61961627 -62114545 + MT2B LTR ERVL 172 264 -337 1 1057 746 98 57 0 chr9 61961538 61961661 -62114511 + B1_Mus1 SINE Alu 19 148 0 1 1057 472 275 75 94 chr9 61962005 61962206 -62113966 - B3A SINE B2 -1 197 1 1 1057 274 282 39 0 chr9 61962908 61963011 -62113161 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 1 1057 637 251 74 15 chr9 61963012 61963214 -62112958 + MER2 DNA MER2_type 2 215 -130 1 1057 445 266 83 26 chr9 61964019 61964212 -62111960 + L1ME3 LINE L1 5655 5858 -321 1 1057 479 143 0 0 chr9 61964227 61964304 -62111868 + B1_Mus2 SINE Alu 69 145 -2 1 1057 190 0 32 32 chr9 61964304 61964335 -62111837 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1057 336 296 119 40 chr9 61964337 61964590 -62111582 + L1ME3 LINE L1 5849 6121 -41 1 1057 908 156 0 0 chr9 61964634 61964794 -62111378 + URR1A DNA MER1_type 58 217 -9 1 1057 252 306 42 67 chr9 61965153 61965272 -62110900 - PB1D10 SINE Alu -1 116 1 1 1057 317 108 324 9 chr9 61965320 61965431 -62110741 - B2_Mm2 SINE B2 -3 192 47 1 1057 1223 124 11 6 chr9 61965461 61965640 -62110532 - B2_Mm1t SINE B2 -12 181 2 1 1057 208 103 51 0 chr9 61967149 61967188 -62108984 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1057 228 278 82 0 chr9 61967351 61967448 -62108724 - MIR SINE MIR -69 139 35 1 1057 343 125 28 0 chr9 61968427 61968499 -62107673 + GA-rich Low_complexity Low_complexity 1 74 0 1 1057 216 0 0 0 chr9 61971542 61971566 -62104606 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 1 1057 448 168 20 0 chr9 61972435 61972536 -62103636 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 1057 1047 276 78 11 chr9 61972730 61973078 -62103094 + MTE2b LTR MaLR 9 379 0 1 1057 263 286 20 81 chr9 61973237 61973336 -62102836 + RSINE1 SINE B4 72 164 -1 1 1057 313 262 0 0 chr9 61973349 61973410 -62102762 - MER115 DNA Tip100 -447 246 186 1 1057 836 231 51 0 chr9 61974507 61974702 -62101470 + B3 SINE B2 7 211 -5 1 1057 488 278 204 28 chr9 61974983 61975261 -62100911 + MLT1F LTR MaLR 47 367 -181 1 1057 1640 210 101 84 chr9 61975261 61975302 -62100870 - MT2A LTR ERVL 0 533 489 1 1057 567 0 0 0 chr9 61975302 61975365 -62100807 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 1057 1640 210 101 84 chr9 61975365 61975754 -62100418 - MT2A LTR ERVL -45 488 97 1 1057 461 250 129 0 chr9 61975754 61975886 -62100286 + B1_Mur2 SINE Alu 1 149 0 1 1057 1640 210 101 84 chr9 61975886 61975978 -62100194 - MT2A LTR ERVL -437 96 1 1 1057 488 266 232 44 chr9 61975978 61976122 -62100050 + MLT1F LTR MaLR 368 533 -15 1 1057 438 266 28 0 chr9 61976753 61976862 -62099310 + RSINE1 SINE B4 8 119 -46 1 1057 3754 125 47 28 chr9 61977106 61977828 -62098344 + RMER17A LTR ERVK 1 736 -15 1 1057 671 267 19 0 chr9 61978260 61978421 -62097751 - ID_B1 SINE B4 -53 171 8 1 1057 191 359 72 52 chr9 61979126 61979320 -62096852 - L2c LINE L2 -150 3237 3040 1 1057 700 229 101 82 chr9 61979755 61980022 -62096150 - RMER15 LTR ERVL 0 575 304 1 1057 486 307 82 10 chr9 61980494 61980701 -62095471 + MER2 DNA MER2_type 7 228 -117 1 1057 593 255 65 0 chr9 61981028 61981181 -62094991 + ORR1E LTR MaLR 1 163 -196 1 1057 1345 191 48 37 chr9 61981183 61981564 -62094608 + RLTR20D LTR ERVK 40 475 -93 1 1057 504 0 0 0 chr9 61981564 61981620 -62094552 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1057 1345 183 51 7 chr9 61981620 61981708 -62094464 + RLTR20D LTR ERVK 476 561 -7 1 1057 662 220 62 23 chr9 61981716 61981893 -62094279 + ORR1E LTR MaLR 175 358 -1 1 1057 234 0 0 0 chr9 61982145 61982171 -62094001 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 1057 668 228 57 67 chr9 61984743 61984936 -62091236 + B3A SINE B2 1 191 -7 1 1057 180 0 0 0 chr9 61985000 61985020 -62091152 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1057 514 200 298 7 chr9 61986087 61986238 -62089934 + ID_B1 SINE B4 1 195 -29 1 1057 448 59 14 14 chr9 61986244 61986313 -62089859 + (TCC)n Simple_repeat Simple_repeat 3 71 0 1 1057 181 346 0 63 chr9 61987093 61987204 -62088968 + MIRb SINE MIR 165 268 0 1 1057 321 247 0 0 chr9 61987783 61987880 -62088292 + (TG)n Simple_repeat Simple_repeat 2 98 0 1 1057 255 328 59 25 chr9 61987883 61988002 -62088170 + MIR3 SINE MIR 83 205 -3 1 1057 629 265 89 47 chr9 61988770 61988960 -62087212 + B3A SINE B2 1 198 0 1 1057 683 229 0 0 chr9 61988972 61989116 -62087056 + B1_Mur1 SINE Alu 6 149 0 1 1057 290 191 273 45 chr9 61989130 61989218 -62086954 + PB1D10 SINE Alu 5 112 -5 1 1057 190 319 63 63 chr9 61989368 61989495 -62086677 - MER5B DNA MER1_type -25 153 27 1 1057 1572 235 48 6 chr9 61989659 61990010 -62086162 - ORR1D2 LTR MaLR -4 366 1 1 1057 300 315 17 67 chr9 61990067 61990186 -62085986 + RSINE1 SINE B4 48 160 -5 1 1057 329 344 52 0 chr9 61991090 61991244 -62084928 + MIRb SINE MIR 72 233 -35 1 1057 1030 223 60 8 chr9 61991825 61992074 -62084098 + MTEb LTR MaLR 118 379 0 1 1057 188 331 107 8 chr9 61992175 61992306 -62083866 + MIRc SINE MIR 3 146 -122 1 1057 968 243 5 5 chr9 61992309 61992524 -62083648 + B3 SINE B2 2 216 0 1 1057 348 43 0 0 chr9 61993283 61993329 -62082843 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1057 1179 41 7 0 chr9 61993329 61993474 -62082698 - B1_Mus2 SINE Alu 0 147 2 1 1057 712 217 58 0 chr9 61993474 61993612 -62082560 - B4 SINE B4 -27 265 120 1 1057 378 147 0 0 chr9 61993692 61993760 -62082412 + (TCC)n Simple_repeat Simple_repeat 3 70 0 1 1057 425 214 22 11 chr9 61993760 61993850 -62082322 - B4A SINE B4 -200 92 2 1 1057 206 133 0 62 chr9 61993934 61993949 -62082223 + A-rich Low_complexity Low_complexity 4 17 0 1 1057 1151 69 7 0 chr9 61993949 61994094 -62082078 + B1_Mus2 SINE Alu 2 147 0 1 1057 206 133 0 62 chr9 61994094 61994116 -62082056 + A-rich Low_complexity Low_complexity 18 39 0 1 1057 1064 114 0 6 chr9 61994116 61994284 -62081888 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 1 1057 213 235 0 0 chr9 61995321 61995372 -62080800 + T-rich Low_complexity Low_complexity 1 51 0 1 1057 224 288 91 25 chr9 61995381 61995502 -62080670 - BC1_Mm scRNA scRNA -23 129 1 1 1057 195 281 31 0 chr9 61995864 61995928 -62080244 - L2a LINE L2 -5 3421 3356 1 1057 258 329 0 45 chr9 61996035 61996124 -62080048 + B3A SINE B2 101 185 -13 1 1057 1879 151 6 3 chr9 61996326 61996646 -62079526 + L1_Mur2 LINE L1 5033 5353 -524 1 1058 743 279 42 78 chr9 61997126 61997410 -62078762 + B4A SINE B4 5 278 -14 1 1058 264 59 0 0 chr9 61997436 61997470 -62078702 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1058 281 299 91 42 chr9 61997480 61997623 -62078549 - MIRb SINE MIR -51 217 68 1 1058 1572 42 21 0 chr9 61998295 61998486 -62077686 - B2_Mm2 SINE B2 0 195 1 1 1058 299 175 0 0 chr9 61998589 61998646 -62077526 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1 1058 503 219 0 14 chr9 61998657 61998946 -62077226 + (TG)n Simple_repeat Simple_repeat 1 284 0 1 1058 1063 240 61 22 chr9 61998966 61999243 -62076929 - B4A SINE B4 -3 289 2 1 1058 400 196 27 0 chr9 61999827 61999915 -62076257 + B3A SINE B2 1 91 -104 1 1058 21 71 0 0 chr9 61999915 61999957 -62076215 + AT_rich Low_complexity Low_complexity 1 42 0 1 1058 240 118 0 0 chr9 61999963 61999997 -62076175 + MER46C DNA MER2_type 185 218 -120 1 1058 394 280 9 36 chr9 62000192 62000303 -62075869 - MER58B DNA MER1_type -14 327 220 1 1058 1179 253 16 62 chr9 62000326 62000630 -62075542 + B4 SINE B4 3 292 0 2 1058 560 186 0 6 chr9 62000630 62000808 -62075364 + GA-rich Low_complexity Low_complexity 1 177 0 3 1058 247 182 0 39 chr9 62000831 62000934 -62075238 + (CAGAGA)n Simple_repeat Simple_repeat 1 99 0 4 1058 212 298 23 23 chr9 62001605 62001691 -62074481 - MIR3 SINE MIR -8 200 115 5 1058 401 158 13 38 chr9 62001715 62001788 -62074384 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 6 1058 1250 267 10 38 chr9 62001788 62002080 -62074092 - B4A SINE B4 -8 284 1 7 1058 261 128 0 0 chr9 62003166 62003213 -62072959 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 8 1058 431 299 25 75 chr9 62003347 62003507 -62072665 - B4 SINE B4 -137 155 2 9 1058 299 301 30 79 chr9 62003569 62003670 -62072502 - B1F SINE Alu -18 131 36 1 1058 291 227 0 7 chr9 62005526 62005665 -62070507 + GA-rich Low_complexity Low_complexity 1 138 0 1 1058 189 0 0 0 chr9 62005879 62005900 -62070272 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1058 189 315 53 32 chr9 62006340 62006435 -62069737 - MIRb SINE MIR -94 174 78 1 1058 252 0 0 0 chr9 62006970 62006998 -62069174 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1058 279 0 0 0 chr9 62006998 62007028 -62069144 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1058 765 261 60 60 chr9 62007065 62007189 -62068983 - B4A SINE B4 -41 251 124 1 1058 180 0 0 0 chr9 62007189 62007209 -62068963 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 1 1058 765 261 60 60 chr9 62007209 62007333 -62068839 - B4A SINE B4 -169 123 3 1 1058 431 208 37 81 chr9 62007727 62007863 -62068309 + MTEb LTR MaLR 250 379 0 1 1058 331 349 65 26 chr9 62007864 62008017 -62068155 + MLT1D LTR MaLR 86 244 -261 1 1058 356 273 27 68 chr9 62008116 62008263 -62067909 - B4 SINE B4 -60 164 27 2 1058 286 305 10 21 chr9 62009069 62009166 -62067006 + GA-rich Low_complexity Low_complexity 5 100 0 2 1058 333 230 39 51 chr9 62009370 62009448 -62066724 - ID_B1 SINE B4 -14 210 134 2 1058 241 250 0 0 chr9 62009474 62009526 -62066646 + CT-rich Low_complexity Low_complexity 2 53 0 2 1058 309 271 57 34 chr9 62009569 62009657 -62066515 - RSINE1 SINE B4 -28 137 48 2 1058 614 297 50 50 chr9 62010309 62010568 -62065604 - ORSL DNA Tip100 -1 274 16 2 1058 288 53 0 0 chr9 62011294 62011332 -62064840 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1058 425 237 20 88 chr9 62011361 62011463 -62064709 - B1_Mur2 SINE Alu -46 103 9 2 1058 290 274 0 164 chr9 62011463 62011474 -62064698 - MT2B LTR ERVL -336 226 164 2 1058 290 351 26 0 chr9 62011688 62011802 -62064370 - MIRb SINE MIR -118 150 34 2 1058 1214 68 0 0 chr9 62012040 62012187 -62063985 - B1_Mus1 SINE Alu 0 148 2 3 1058 836 249 17 64 chr9 62012189 62012425 -62063747 - ORR1D2 LTR MaLR -2 368 144 3 1058 240 74 35 53 chr9 62012425 62012482 -62063690 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 3 1058 941 124 0 21 chr9 62012482 62012622 -62063550 - B1_Mur3 SINE Alu -1 148 12 3 1058 477 211 121 86 chr9 62012638 62012778 -62063394 - ORR1D2 LTR MaLR -228 146 2 3 1058 200 143 24 0 chr9 62013165 62013207 -62062965 + CT-rich Low_complexity Low_complexity 2 44 0 3 1058 276 260 77 13 chr9 62013276 62013354 -62062818 - MTEa LTR MaLR -10 369 287 3 1058 611 232 103 40 chr9 62013334 62013509 -62062663 - ID_B1 SINE B4 -38 186 1 3 1058 242 254 188 23 chr9 62013668 62013801 -62062371 + MIRb SINE MIR 112 266 -2 3 1058 213 324 15 0 chr9 62014739 62014807 -62061365 + MIRb SINE MIR 167 235 -33 3 1058 201 74 0 0 chr9 62014935 62014962 -62061210 + (TCG)n Simple_repeat Simple_repeat 2 28 0 3 1058 696 291 102 43 chr9 62014981 62015261 -62060911 + B4 SINE B4 9 275 -17 4 1058 425 19 0 18 chr9 62015262 62015317 -62060855 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1058 201 271 14 54 chr9 62015386 62015460 -62060712 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 1058 2402 159 42 15 chr9 62016062 62016470 -62059702 - MTC LTR MaLR -2 419 1 4 1058 196 324 94 62 chr9 62016533 62016842 -62059330 - L2c LINE L2 -67 3320 3002 4 1058 574 207 134 85 chr9 62018159 62018360 -62057812 - MTE2a LTR MaLR -21 358 148 4 1058 1523 109 121 74 chr9 62018691 62018989 -62057183 - ORR1B1 LTR MaLR -36 358 47 4 1058 360 0 0 0 chr9 62019365 62019405 -62056767 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1058 515 333 31 46 chr9 62019424 62019713 -62056459 - B4 SINE B4 -18 274 2 4 1058 777 313 15 5 chr9 62019719 62019915 -62056257 - ID_B1 SINE B4 -25 199 2 4 1058 275 355 107 26 chr9 62020040 62020274 -62055898 + L3 LINE CR1 3696 3948 -541 5 1058 854 282 68 23 chr9 62020866 62021131 -62055041 + B4A SINE B4 2 278 -14 5 1058 360 0 0 0 chr9 62021173 62021213 -62054959 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1058 4435 35 2 26 chr9 62021251 62021783 -62054389 - MURVY-LTR LTR ERV1 0 519 1 5 1058 293 300 14 71 chr9 62022498 62022638 -62053534 + MIRb SINE MIR 128 259 -9 5 1058 632 267 20 0 chr9 62023265 62023411 -62052761 + B3A SINE B2 2 150 -48 5 1058 325 283 133 6 chr9 62023662 62023798 -62052374 - MLT1H LTR MaLR -9 618 415 5 1058 301 306 0 96 chr9 62023878 62023972 -62052200 - B1F2 SINE Alu -64 85 1 5 1058 422 264 19 19 chr9 62023972 62024005 -62052167 - ID SINE ID -142 82 50 5 1058 299 297 35 43 chr9 62024078 62024194 -62051978 - MLT1H LTR MaLR -274 215 101 5 1058 468 336 50 36 chr9 62024564 62024783 -62051389 + MER102b DNA MER1_type 109 330 -11 5 1058 395 174 257 92 chr9 62024827 62024979 -62051193 - ID_B1 SINE B4 0 224 48 6 1058 235 0 28 28 chr9 62024999 62025035 -62051137 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1058 1251 54 0 0 chr9 62025038 62025185 -62050987 - B1_Mm SINE Alu 0 147 1 6 1058 978 270 40 72 chr9 62025207 62025554 -62050618 - ORR1D2 LTR MaLR -32 338 3 6 1058 2169 156 56 13 chr9 62025561 62025951 -62050221 + MTB_Mm LTR MaLR 1 407 0 6 1058 646 229 0 0 chr9 62026702 62026824 -62049348 + RSINE1 SINE B4 4 125 -40 6 1058 440 277 183 30 chr9 62026869 62027033 -62049139 - B3A SINE B2 -7 191 3 6 1058 1551 195 238 26 chr9 62027080 62027538 -62048634 - RMER15 LTR ERVL 0 575 21 6 1058 182 368 0 0 chr9 62027947 62028004 -62048168 + MER5A DNA MER1_type 98 154 -35 6 1058 1331 125 81 5 chr9 62028149 62028358 -62047814 - URR1B DNA MER1_type 0 225 1 6 1058 187 267 33 16 chr9 62028437 62028498 -62047674 - MER5A DNA MER1_type -84 105 44 7 1058 272 175 127 0 chr9 62029483 62029546 -62046626 + MER5A1 DNA MER1_type 5 75 -91 7 1058 712 250 0 101 chr9 62029547 62029756 -62046416 + B3A SINE B2 1 188 -10 7 1058 250 273 45 0 chr9 62030326 62030392 -62045780 + B1F2 SINE Alu 11 79 -70 7 1058 2065 144 114 72 chr9 62030425 62030853 -62045319 - RLTR41 LTR ERV1 0 446 1 7 1058 584 295 40 70 chr9 62030902 62031201 -62044971 - B4A SINE B4 0 292 3 7 1058 267 31 0 0 chr9 62031450 62031482 -62044690 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1058 1306 211 29 109 chr9 62031803 62032277 -62043895 + RMER16 LTR ERVK 3 533 0 7 1058 197 342 12 37 chr9 62032398 62032480 -62043692 - MER5B DNA MER1_type -4 174 95 7 1058 422 297 48 82 chr9 62032536 62032767 -62043405 - MER90a LTR ERV1 -9 605 383 7 1058 706 246 102 23 chr9 62032773 62032989 -62043183 + B4A SINE B4 1 233 -59 8 1058 821 246 28 16 chr9 62032988 62033170 -62043002 + B3A SINE B2 15 198 0 8 1058 274 312 85 40 chr9 62033387 62033611 -62042561 - MER90a LTR ERV1 -339 236 3 7 1058 311 0 26 0 chr9 62034006 62034045 -62042127 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1058 360 0 0 0 chr9 62034045 62034084 -62042088 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1058 475 277 7 44 chr9 62034489 62034625 -62041547 - RSINE1 SINE B4 -34 131 1 8 1058 348 246 0 0 chr9 62035561 62035630 -62040542 - B4 SINE B4 -13 279 211 8 1058 276 212 191 28 chr9 62035650 62035791 -62040381 - Lx8 LINE L1 -2 7471 7308 8 1058 268 346 35 50 chr9 62035904 62036105 -62040067 + MIRb SINE MIR 50 247 -21 8 1058 196 311 77 0 chr9 62037305 62037388 -62038784 + L2a LINE L2 3023 3119 -256 8 1058 185 0 40 0 chr9 62037982 62038007 -62038165 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1058 511 282 153 39 chr9 62038943 62039198 -62036974 - RMER15 LTR ERVL -15 560 277 9 1058 337 204 10 48 chr9 62040734 62040837 -62035335 + CT-rich Low_complexity Low_complexity 2 100 0 9 1058 426 290 170 11 chr9 62040954 62041142 -62035030 + ID_B1 SINE B4 2 219 -5 9 1058 781 297 57 4 chr9 62041524 62041754 -62034418 + B4A SINE B4 29 270 -22 9 1058 348 24 0 0 chr9 62041768 62041809 -62034363 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1058 198 103 0 0 chr9 62042516 62042545 -62033627 + (CTG)n Simple_repeat Simple_repeat 1 29 0 9 1058 201 175 0 70 chr9 62042549 62042564 -62033608 + polypurine Low_complexity Low_complexity 4 17 0 9 1058 1171 41 0 70 chr9 62042564 62042721 -62033451 + B1_Mm SINE Alu 2 147 0 9 1058 201 175 0 70 chr9 62042721 62042748 -62033424 + polypurine Low_complexity Low_complexity 18 43 0 9 1058 826 288 145 34 chr9 62042823 62043493 -62032679 - L1ME3A LINE L1 -163 6010 5267 9 1058 2602 48 90 0 chr9 62043665 62044039 -62032133 + L1_Mus1 LINE L1 6201 6567 0 1 1058 995 122 42 47 chr9 62044264 62044454 -62031718 + Lx2 LINE L1 6803 6991 -6 1 1058 240 343 51 29 chr9 62044622 62044760 -62031412 + MLT1A0 LTR MaLR 8 148 -217 1 1058 288 0 0 0 chr9 62044872 62044904 -62031268 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1058 1075 50 2 3 chr9 62044904 62045040 -62031132 - B1_Mus1 SINE Alu -12 136 3 1 1058 2534 117 35 67 chr9 62045040 62045472 -62030700 - MTC LTR MaLR -3 418 1 1 1058 256 299 0 15 chr9 62045587 62045655 -62030517 + MTE2a LTR MaLR 269 335 -44 1 1058 385 248 89 71 chr9 62045660 62045829 -62030343 + RLTR15 LTR ERVK 1 172 -187 1 1058 23 0 0 0 chr9 62046035 62046058 -62030114 + AT_rich Low_complexity Low_complexity 1 23 0 1 1058 216 0 0 0 chr9 62046234 62046258 -62029914 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1058 192 170 40 60 chr9 62046293 62046343 -62029829 - L2b LINE L2 -1 3374 3326 1 1058 268 281 147 62 chr9 62046627 62046756 -62029416 + MamGypLTR1b LTR Gypsy 159 298 -484 1 1058 440 35 17 0 chr9 62046857 62046915 -62029257 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1058 348 24 0 0 chr9 62047760 62047801 -62028371 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1058 303 93 0 0 chr9 62048978 62049021 -62027151 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1058 290 203 102 0 chr9 62049029 62049088 -62027084 - B4A SINE B4 -129 163 99 1 1058 754 249 18 29 chr9 62049120 62049290 -62026882 - B3 SINE B2 -43 173 6 1 1058 567 258 178 26 chr9 62049308 62049499 -62026673 - B4 SINE B4 -69 223 4 1 1058 606 70 10 29 chr9 62049624 62049727 -62026445 + (TTC)n Simple_repeat Simple_repeat 2 102 0 1 1058 1158 88 0 0 chr9 62049876 62050023 -62026149 + B1_Mus1 SINE Alu 2 148 0 1 1058 208 80 19 57 chr9 62050024 62050077 -62026095 + A-rich Low_complexity Low_complexity 3 53 0 1 1058 357 246 15 63 chr9 62050186 62050312 -62025860 - PB1D10 SINE Alu -3 147 21 1 1058 904 232 38 0 chr9 62050220 62050405 -62025767 - ID_B1 SINE B4 -31 193 2 1 1058 364 316 66 51 chr9 62050517 62050714 -62025458 - MIRb SINE MIR -16 252 53 1 1058 341 272 142 50 chr9 62050940 62051060 -62025112 - RSINE1 SINE B4 -28 137 7 1 1058 242 204 19 0 chr9 62051104 62051158 -62025014 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1058 29 28 0 0 chr9 62051158 62051194 -62024978 + AT_rich Low_complexity Low_complexity 1 36 0 1 1058 681 262 77 0 chr9 62051198 62051366 -62024806 + ID_B1 SINE B4 11 191 -33 1 1058 351 0 0 0 chr9 62051401 62051440 -62024732 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1058 270 0 0 0 chr9 62051862 62051892 -62024280 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1058 757 272 97 94 chr9 62052173 62052534 -62023638 - MTE2a LTR MaLR -17 362 1 1 1058 538 73 0 40 chr9 62052747 62052847 -62023325 - Lx LINE L1 0 6654 6559 1 1058 616 139 46 12 chr9 62053472 62053579 -62022593 - B3 SINE B2 -86 130 1 1 1058 808 221 40 104 chr9 62053694 62053916 -62022256 - ID_B1 SINE B4 -16 208 1 1 1058 388 181 40 53 chr9 62053994 62054070 -62022102 - PB1D9 SINE Alu -45 75 1 1 1058 219 139 0 0 chr9 62054080 62054116 -62022056 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1058 920 171 0 0 chr9 62054117 62054257 -62021915 - B1_Mus1 SINE Alu -8 140 1 1 1058 4954 45 14 0 chr9 62054307 62054886 -62021286 - LTRIS_Mus LTR ERV1 0 587 1 1 1058 723 282 0 0 chr9 62054949 62055112 -62021060 - RSINE1 SINE B4 0 165 3 1 1058 1012 74 65 14 chr9 62055998 62056136 -62020036 + B1_Mus2 SINE Alu 1 145 -2 1 1058 274 284 156 0 chr9 62056546 62056687 -62019485 + RSINE1 SINE B4 3 165 0 1 1058 481 196 2 49 chr9 62056981 62057096 -62019076 + RSINE1 SINE B4 1 106 -59 1 1058 337 250 0 42 chr9 62057136 62057232 -62018940 - ID_B1 SINE B4 -3 221 130 1 1058 1200 49 0 0 chr9 62057237 62057379 -62018793 - B1_Mus2 SINE Alu -1 146 5 1 1058 1358 98 0 40 chr9 62057499 62057701 -62018471 - B2_Mm2 SINE B2 0 195 2 1 1058 351 0 0 0 chr9 62057735 62057774 -62018398 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1058 519 17 0 0 chr9 62057774 62057833 -62018339 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1058 919 238 3 9 chr9 62058087 62058303 -62017869 - B3A SINE B2 -1 215 2 1 1058 308 233 120 22 chr9 62058348 62058378 -62017794 + L1MDa LINE L1 2401 2439 -4194 1 1058 1201 75 0 0 chr9 62058378 62058524 -62017648 + B1_Mus2 SINE Alu 2 147 0 1 1058 308 233 120 22 chr9 62058524 62058585 -62017587 + L1MDa LINE L1 2440 2501 -4132 1 1058 750 222 29 23 chr9 62058847 62059018 -62017154 - MTE2a LTR MaLR -14 365 194 1 1058 623 223 46 164 chr9 62059026 62059289 -62016883 - MTE2a LTR MaLR -146 233 2 1 1058 219 69 0 0 chr9 62060156 62060185 -62015987 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1058 509 260 37 19 chr9 62060185 62060346 -62015826 - ID_B1 SINE B4 -9 215 10 1 1058 297 0 0 0 chr9 62060346 62060379 -62015793 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1058 427 315 46 0 chr9 62060386 62060516 -62015656 + MER104 DNA Tc2 38 173 -8 1 1058 520 239 34 40 chr9 62061043 62061191 -62014981 - RSINE1 SINE B4 -17 148 2 1 1058 189 364 22 52 chr9 62061284 62061420 -62014752 - L2c LINE L2 -13 3374 3243 1 1058 1267 76 53 16 chr9 62061544 62061732 -62014440 + B2_Mm2 SINE B2 1 195 0 1 1058 435 336 50 74 chr9 62061753 62062052 -62014120 + B4A SINE B4 1 292 0 1 1058 186 43 0 0 chr9 62062068 62062091 -62014081 + (CATA)n Simple_repeat Simple_repeat 4 26 0 1 1058 447 299 21 7 chr9 62062115 62062260 -62013912 + B1F2 SINE Alu 1 147 -2 1 1058 510 243 9 9 chr9 62062487 62062599 -62013573 + ID_B1 SINE B4 84 195 -29 1 1058 509 279 15 7 chr9 62062636 62062773 -62013399 + ID_B1 SINE B4 20 157 -67 1 1058 521 235 211 24 chr9 62062773 62062939 -62013233 + B3A SINE B2 2 198 0 1 1058 272 250 125 0 chr9 62062946 62063018 -62013154 + ID_B1 SINE B4 143 223 -1 1 1058 649 223 217 0 chr9 62063862 62064057 -62012115 + MTEa LTR MaLR 1 227 -152 1 1058 291 159 37 0 chr9 62064057 62064164 -62012008 + (TCTCTG)n Simple_repeat Simple_repeat 2 112 0 1 1058 409 234 29 184 chr9 62064166 62064302 -62011870 + MTEa LTR MaLR 259 373 -6 1 1058 208 352 26 44 chr9 62064873 62064986 -62011186 - L2b LINE L2 -25 3350 3240 1 1058 1281 27 0 0 chr9 62065315 62065461 -62010711 + B1_Mm SINE Alu 2 147 0 1 1058 189 154 0 0 chr9 62065461 62065500 -62010672 + A-rich Low_complexity Low_complexity 1 39 0 1 1058 434 198 177 0 chr9 62065533 62065629 -62010543 + B1_Mur1 SINE Alu 37 149 0 1 1058 238 118 0 56 chr9 62065629 62065683 -62010489 + GA-rich Low_complexity Low_complexity 2 52 0 1 1058 525 197 469 0 chr9 62065857 62065880 -62010292 + ID_B1 SINE B4 14 223 -1 1 1058 274 286 58 67 chr9 62065880 62066000 -62010172 + B1F2 SINE Alu 30 148 -1 1 1058 360 200 41 139 chr9 62066049 62066171 -62010001 + RMER10A LTR ERVL 19 128 -314 1 1058 203 167 0 0 chr9 62066430 62066466 -62009706 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1058 973 207 52 5 chr9 62066476 62066670 -62009502 - B3 SINE B2 -5 211 9 1 1058 25 65 0 0 chr9 62066691 62066737 -62009435 + AT_rich Low_complexity Low_complexity 1 46 0 1 1058 937 154 0 20 chr9 62066738 62066890 -62009282 - B1_Mur3 SINE Alu 0 149 1 1 1058 285 298 186 0 chr9 62066934 62067058 -62009114 - RSINE1 SINE B4 -17 148 2 1 1058 353 236 135 0 chr9 62067079 62067168 -62009004 - PB1D10 SINE Alu -4 113 13 1 1058 771 187 73 61 chr9 62067100 62067265 -62008907 - ID_B1 SINE B4 -54 170 4 1 1058 722 276 6 35 chr9 62067538 62067615 -62008557 - B3A SINE B2 -30 168 95 1 1058 1737 155 55 40 chr9 62067615 62068019 -62008153 - RMER17C LTR ERVK 0 410 1 1 1058 722 276 6 35 chr9 62068019 62068114 -62008058 - B3A SINE B2 -104 94 1 1 1058 506 261 38 52 chr9 62068152 62068362 -62007810 - RLTR42-int LTR ERVK -4122 1400 1194 1 1058 228 35 0 0 chr9 62069092 62069121 -62007051 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 1 1058 450 0 0 0 chr9 62069499 62069549 -62006623 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1058 620 272 56 95 chr9 62069554 62069623 -62006549 - B4 SINE B4 -50 242 190 1 1058 189 0 0 0 chr9 62069623 62069644 -62006528 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 1058 620 272 56 95 chr9 62069644 62069826 -62006346 - B4 SINE B4 -103 189 1 1 1058 264 59 0 0 chr9 62069894 62069928 -62006244 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1058 245 230 0 13 chr9 62070169 62070244 -62005928 + CT-rich Low_complexity Low_complexity 3 76 0 1 1058 233 139 0 0 chr9 62070670 62070706 -62005466 - L1M2 LINE L1 -2291 3852 3817 1 1058 478 312 62 14 chr9 62070788 62070999 -62005173 - L1M2 LINE L1 -4231 2618 2398 1 1058 883 219 22 44 chr9 62071064 62071289 -62004883 - ID_B1 SINE B4 -3 221 2 1 1058 30 27 0 0 chr9 62071452 62071489 -62004683 + AT_rich Low_complexity Low_complexity 1 37 0 1 1058 29608 92 70 4 chr9 62071489 62077280 -61998892 - L1_Mus1 LINE L1 -2 6565 368 1 1058 258 32 0 0 chr9 62077382 62077413 -61998759 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1058 851 157 43 7 chr9 62077413 62077554 -61998618 - B1_Mur4 SINE Alu -2 148 3 1 1058 613 261 44 6 chr9 62077580 62077738 -61998434 - RSINE1 SINE B4 0 165 2 1 1058 315 135 39 0 chr9 62077738 62077790 -61998382 - B4A SINE B4 -62 230 177 1 1058 483 18 0 0 chr9 62077791 62077847 -61998325 + (CAGGA)n Simple_repeat Simple_repeat 5 60 0 1 1058 315 0 0 0 chr9 62078016 62078051 -61998121 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1058 369 0 0 0 chr9 62078852 62078893 -61997279 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1058 620 228 77 6 chr9 62079102 62079278 -61996894 + ID_B1 SINE B4 2 190 -34 2 1058 559 234 96 62 chr9 62079278 62079456 -61996716 + B3A SINE B2 2 185 -10 2 1058 1889 130 139 0 chr9 62079511 62079835 -61996337 - RMER1B Other Other 0 1066 698 2 1058 1308 159 179 0 chr9 62079850 62080102 -61996070 - RMER1B Other Other -769 297 1 2 1058 999 110 35 0 chr9 62081000 62081145 -61995027 - B1_Mur4 SINE Alu 0 150 1 2 1058 21 0 0 0 chr9 62081211 62081232 -61994940 + AT_rich Low_complexity Low_complexity 1 21 0 2 1058 486 0 0 0 chr9 62081232 62081286 -61994886 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1058 1188 55 0 0 chr9 62081415 62081561 -61994611 - B1_Mm SINE Alu 0 147 2 2 1058 4290 44 2 6 chr9 62081712 62082234 -61993938 - L1Md_F2 LINE L1 0 6582 6063 2 1058 457 315 47 60 chr9 62082397 62082593 -61993579 - ID_B1 SINE B4 -23 269 80 2 1058 1611 208 69 0 chr9 62082897 62083095 -61993077 - ORR1D1 LTR MaLR 0 374 165 2 1058 417 39 0 0 chr9 62083095 62083146 -61993026 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1058 1611 208 69 0 chr9 62083146 62083294 -61992878 - ORR1D1 LTR MaLR -210 164 5 2 1058 3517 45 28 5 chr9 62083834 62084260 -61991912 - RLTR10C LTR ERVK 0 436 1 2 1058 1180 292 75 37 chr9 62084440 62084921 -61991251 - RMER5 LTR ERV1 -17 517 19 2 1058 204 40 0 0 chr9 62085236 62085261 -61990911 + (CCCTG)n Simple_repeat Simple_repeat 2 26 0 2 1058 524 215 148 34 chr9 62086196 62086345 -61989827 + ID_B1 SINE B4 58 223 -1 2 1058 471 240 0 20 chr9 62086407 62086509 -61989663 - PB1D10 SINE Alu -7 110 11 2 1058 180 217 0 0 chr9 62086743 62086789 -61989383 + (ATGGTG)n Simple_repeat Simple_repeat 4 49 0 2 1058 1816 188 64 37 chr9 62086821 62087229 -61988943 + MTD LTR MaLR 1 419 0 2 1058 209 204 0 18 chr9 62088177 62088232 -61987940 + GA-rich Low_complexity Low_complexity 3 56 0 2 1058 758 302 117 13 chr9 62088633 62088942 -61987230 - MT2A LTR ERVL 0 533 193 2 1058 288 323 0 0 chr9 62088980 62088996 -61987176 - MT2A LTR ERVL -437 96 1 2 1058 343 300 0 0 chr9 62088996 62089076 -61987096 - MTE2b LTR MaLR -299 80 1 2 1058 432 317 135 19 chr9 62089076 62089312 -61986860 + RMER15 LTR ERVL 290 556 -19 2 1058 270 0 0 0 chr9 62089442 62089472 -61986700 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1058 566 261 176 59 chr9 62089994 62090250 -61985922 - B4A SINE B4 0 292 7 2 1058 847 225 21 5 chr9 62090384 62090403 -61985769 - B3A SINE B2 0 198 179 2 1058 2324 132 52 0 chr9 62090403 62090752 -61985420 - ORR1B2 LTR MaLR 0 367 1 2 1058 847 225 21 5 chr9 62090752 62090924 -61985248 - B3A SINE B2 -20 178 5 2 1058 587 254 8 0 chr9 62091189 62091323 -61984849 - RSINE1 SINE B4 -28 137 3 2 1058 646 230 7 7 chr9 62091441 62091581 -61984591 - ID_B1 SINE B4 0 224 85 2 1058 1752 212 84 16 chr9 62092435 62092818 -61983354 + MTD LTR MaLR 7 415 -4 2 1058 557 278 18 47 chr9 62092822 62092992 -61983180 - MTE2b LTR MaLR -9 370 206 2 1058 231 284 0 129 chr9 62092983 62093084 -61983088 - B1F2 SINE Alu -61 88 1 2 1058 436 293 13 91 chr9 62093084 62093161 -61983011 - B4A SINE B4 -219 73 9 2 1058 1112 27 6 58 chr9 62094580 62094736 -61981436 + B2_Mm2 SINE B2 2 149 -46 2 1058 222 116 0 0 chr9 62094759 62094802 -61981370 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1058 766 239 0 19 chr9 62094821 62094979 -61981193 + RSINE1 SINE B4 1 155 -10 2 1058 450 141 0 27 chr9 62095089 62095162 -61981010 + MTC LTR MaLR 1 71 -350 2 1058 387 0 0 0 chr9 62095162 62095205 -61980967 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1058 3242 155 142 17 chr9 62095219 62095862 -61980310 - RMER1A Other Other -13 1017 295 2 1058 601 203 41 29 chr9 62095862 62096001 -61980171 + MTC LTR MaLR 55 224 -197 2 1058 212 143 0 23 chr9 62096044 62096087 -61980085 + GA-rich Low_complexity Low_complexity 3 44 0 2 1058 1449 127 27 0 chr9 62096093 62096313 -61979859 + MTC LTR MaLR 196 421 0 2 1058 712 154 101 34 chr9 62096341 62096489 -61979683 - MTC LTR MaLR -263 158 1 2 1058 520 291 288 0 chr9 62096714 62096866 -61979306 + B4 SINE B4 22 215 -77 2 1058 246 32 0 0 chr9 62096866 62096897 -61979275 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2 1058 457 235 59 0 chr9 62096897 62096967 -61979205 + B4A SINE B4 216 290 -2 2 1058 702 285 18 12 chr9 62097421 62097521 -61978651 + B3A SINE B2 1 100 -98 2 1058 2519 103 68 0 chr9 62097521 62097890 -61978282 - ORR1B1 LTR MaLR 0 394 1 2 1058 7247 159 67 21 chr9 62097890 62099332 -61976840 - ORR1B1-int LTR MaLR 0 1509 1 2 1058 2026 138 39 94 chr9 62099332 62099748 -61976424 - ORR1B1 LTR MaLR 0 394 2 2 1058 702 263 42 33 chr9 62099748 62099857 -61976315 + B3A SINE B2 99 211 -5 2 1058 360 271 152 32 chr9 62099863 62100080 -61976092 + L1MEc LINE L1 1915 2157 -4245 2 1058 1221 103 0 71 chr9 62100126 62100324 -61975848 + B2_Mm2 SINE B2 2 185 -10 2 1058 579 308 25 10 chr9 62100426 62100623 -61975549 + B3 SINE B2 3 202 -14 2 1058 691 294 68 21 chr9 62100661 62100897 -61975275 + B4A SINE B4 7 253 -39 2 1058 315 0 0 0 chr9 62100901 62100936 -61975236 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1058 317 256 0 0 chr9 62100937 62101019 -61975153 + L1MEc LINE L1 2285 2366 -4142 2 1058 233 228 85 21 chr9 62101026 62101120 -61975052 + L1MEc LINE L1 2982 3081 -3240 2 1058 351 318 60 7 chr9 62101234 62101383 -61974789 + L1M5 LINE L1 2880 3036 -3110 2 1058 281 280 18 53 chr9 62101392 62101505 -61974667 - B3A SINE B2 0 198 90 2 1058 209 282 176 0 chr9 62101669 62101754 -61974418 - MIRc SINE MIR -119 149 50 2 1058 819 80 0 0 chr9 62102445 62102557 -61973615 + (TC)n Simple_repeat Simple_repeat 1 112 0 2 1058 1191 48 14 0 chr9 62102632 62102777 -61973395 + B1_Mus1 SINE Alu 2 148 0 2 1058 1277 222 73 135 chr9 62102850 62103048 -61973124 + MTD LTR MaLR 10 200 -219 2 1058 1139 84 0 0 chr9 62103048 62103190 -61972982 + B1_Mus1 SINE Alu 2 143 -5 2 1058 1277 222 73 135 chr9 62103190 62103413 -61972759 + MTD LTR MaLR 201 405 -14 2 1058 2090 190 8 22 chr9 62103473 62103844 -61972328 - ORR1C1 LTR MaLR -12 366 1 2 1058 689 241 147 65 chr9 62103995 62104370 -61971802 - RMER15 LTR ERVL -15 560 1 2 1058 1041 75 0 70 chr9 62104769 62104927 -61971245 - B1_Mus2 SINE Alu 0 147 1 2 1058 294 244 8 16 chr9 62105059 62105180 -61970992 + CT-rich Low_complexity Low_complexity 2 121 0 2 1058 437 283 8 10 chr9 62105186 62105300 -61970872 + B3A SINE B2 86 203 -13 2 1058 1193 68 0 0 chr9 62106308 62106456 -61969716 + B1_Mus1 SINE Alu 1 148 0 2 1058 192 77 0 0 chr9 62106456 62106482 -61969690 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 2 1058 255 193 0 0 chr9 62106495 62106578 -61969594 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1058 2885 184 81 52 chr9 62106688 62107359 -61968813 + RMER6C LTR ERVK 1 690 0 2 1058 917 188 141 35 chr9 62107400 62107500 -61968672 + ID_B1 SINE B4 3 100 -124 2 1058 4812 80 22 132 chr9 62107500 62108409 -61967763 + RMER17D2 LTR ERVK 1 809 0 2 1058 917 188 141 35 chr9 62108409 62108507 -61967665 + ID_B1 SINE B4 101 222 -2 2 1058 505 284 45 90 chr9 62109680 62110023 -61966149 + MTD LTR MaLR 1 371 -29 2 1058 1132 53 0 0 chr9 62110024 62110157 -61966015 + B1_Mus2 SINE Alu 2 134 -13 2 1058 206 32 32 0 chr9 62110157 62110188 -61965984 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1058 721 254 36 7 chr9 62110206 62110405 -61965767 + B3 SINE B2 1 195 -3 2 1058 748 292 111 21 chr9 62110787 62110854 -61965318 + Lx6 LINE L1 6507 6577 -473 2 1058 315 0 0 0 chr9 62110854 62110889 -61965283 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1058 781 286 219 42 chr9 62110889 62111309 -61964863 + Lx6 LINE L1 6993 7457 -3 2 1058 619 144 84 77 chr9 62111318 62111461 -61964711 + B1_Mur1 SINE Alu 1 144 -5 2 1058 281 237 26 0 chr9 62111503 62111579 -61964593 + AluG_3 SINE Alu 137 214 -97 2 1058 863 145 0 28 chr9 62112027 62112169 -61964003 + B1_Mur4 SINE Alu 8 145 -5 2 1058 1236 55 0 0 chr9 62112578 62112724 -61963448 - B1_Mus2 SINE Alu 0 147 2 2 1058 2972 32 6 0 chr9 62112801 62113145 -61963027 - ORR1A1 LTR MaLR 0 346 1 2 1058 357 281 45 0 chr9 62113641 62113730 -61962442 - ID_B1 SINE B4 -117 107 15 2 1058 393 217 55 164 chr9 62114176 62114286 -61961886 - B3A SINE B2 -56 160 49 2 1058 486 0 0 0 chr9 62114304 62114358 -61961814 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1058 285 249 128 145 chr9 62114377 62114659 -61961513 - B4 SINE B4 -15 277 1 2 1058 847 244 16 22 chr9 62114902 62115086 -61961086 + ID_B1 SINE B4 3 185 -39 2 1058 181 245 39 58 chr9 62115152 62115204 -61960968 + L2 LINE L2 2535 2585 -834 2 1058 555 316 154 36 chr9 62115336 62115556 -61960616 - B4A SINE B4 -46 246 1 2 1058 1126 205 5 0 chr9 62115577 62115792 -61960380 - B3 SINE B2 0 216 1 2 1058 632 276 139 8 chr9 62116023 62116275 -61959897 - B4A SINE B4 -6 286 2 2 1058 538 307 156 28 chr9 62116389 62116600 -61959572 - B4A SINE B4 -53 239 2 2 1058 263 206 18 0 chr9 62116772 62116837 -61959335 + L1MC1 LINE L1 6148 6217 -127 2 1058 320 287 75 37 chr9 62116849 62116887 -61959285 + ID_B1 SINE B4 81 121 -103 2 1058 369 0 0 0 chr9 62116887 62116928 -61959244 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1058 320 287 75 37 chr9 62116928 62117023 -61959149 + ID_B1 SINE B4 122 218 -6 2 1058 706 196 86 11 chr9 62117056 62117231 -61958941 - B2_Mm2 SINE B2 -7 188 1 2 1058 580 279 56 51 chr9 62117486 62117707 -61958465 + B4A SINE B4 11 232 -60 2 1058 569 305 37 51 chr9 62117707 62117921 -61958251 + B3 SINE B2 1 211 -5 2 1058 315 310 0 44 chr9 62117915 62118006 -61958166 + B4A SINE B4 202 288 -4 2 1058 568 255 7 54 chr9 62118142 62118291 -61957881 + B3A SINE B2 3 144 -54 2 1058 396 0 0 0 chr9 62118295 62118339 -61957833 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1058 358 303 67 33 chr9 62118361 62118631 -61957541 + L1MC5 LINE L1 7354 7632 -329 2 1058 188 278 19 0 chr9 62119055 62119109 -61957063 + L2b LINE L2 2755 2809 -610 3 1058 239 397 134 32 chr9 62119205 62119577 -61956595 + L2b LINE L2 2964 3373 -2 3 1058 23 0 0 0 chr9 62120062 62120085 -61956087 + AT_rich Low_complexity Low_complexity 1 23 0 3 1058 3547 121 53 38 chr9 62121638 62122246 -61953926 - Lx4B LINE L1 0 7058 6442 3 1058 395 241 134 76 chr9 62122307 62122478 -61953694 + MER63D DNA AcHobo 69 249 -812 3 1058 477 62 0 0 chr9 62122535 62122600 -61953572 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1058 564 250 25 37 chr9 62122603 62122835 -61953337 - B4 SINE B4 -27 265 2 3 1058 2163 199 78 5 chr9 62123083 62123493 -61952679 + Lx5 LINE L1 6611 7050 0 3 1058 1425 80 16 0 chr9 62123564 62123751 -61952421 + B2_Mm2 SINE B2 1 190 -5 3 1058 733 269 49 95 chr9 62123772 62124076 -61952096 + B4 SINE B4 1 290 -2 3 1058 244 312 0 0 chr9 62124358 62124438 -61951734 + L1MC5 LINE L1 7713 7792 -169 3 1058 612 226 97 51 chr9 62125417 62125613 -61950559 + B4A SINE B4 2 206 -86 3 1058 448 187 140 0 chr9 62125816 62125923 -61950249 - ID_B1 SINE B4 -11 213 92 3 1058 762 181 43 0 chr9 62126265 62126403 -61949769 - B1_Mur2 SINE Alu -5 144 1 3 1058 229 26 53 0 chr9 62126411 62126449 -61949723 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1058 191 167 24 0 chr9 62126603 62126645 -61949527 + (TTA)n Simple_repeat Simple_repeat 3 45 0 3 1058 845 236 6 28 chr9 62126676 62126855 -61949317 + B3 SINE B2 37 211 -5 3 1058 333 0 0 0 chr9 62126971 62127008 -61949164 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1058 315 333 73 24 chr9 62127051 62127174 -61948998 + L1MDa LINE L1 1812 1940 -4693 3 1058 362 221 95 118 chr9 62127230 62127399 -61948773 + RSINE1 SINE B4 1 165 0 3 1058 267 383 25 55 chr9 62127700 62127863 -61948309 + B4A SINE B4 1 158 -134 3 1058 556 38 12 12 chr9 62127932 62128012 -61948160 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 1059 260 309 184 14 chr9 62128602 62128743 -61947429 + MLT1H2 LTR MaLR 66 230 -259 3 1059 794 257 4 18 chr9 62128745 62128971 -61947201 + ID_B1 SINE B4 1 223 -1 3 1059 280 174 22 0 chr9 62129030 62129122 -61947050 + GA-rich Low_complexity Low_complexity 1 94 0 3 1059 24 32 0 0 chr9 62129189 62129220 -61946952 + AT_rich Low_complexity Low_complexity 1 31 0 3 1059 391 340 31 19 chr9 62129410 62129569 -61946603 - MER58B DNA MER1_type 0 341 181 3 1059 518 266 38 48 chr9 62130530 62130739 -61945433 - ID_B1 SINE B4 -17 207 1 3 1059 188 86 0 28 chr9 62130782 62130818 -61945354 + (TTTTTG)n Simple_repeat Simple_repeat 5 39 0 3 1059 407 280 83 0 chr9 62131241 62131373 -61944799 - L1M2 LINE L1 -548 5743 5601 3 1059 390 265 87 109 chr9 62131405 62131571 -61944601 + ID_B1 SINE B4 1 172 -52 3 1059 216 0 0 0 chr9 62131571 62131595 -61944577 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3 1059 1120 121 11 27 chr9 62131595 62131615 -61944557 + B2_Mm2 SINE B2 164 184 -11 3 1059 390 265 87 109 chr9 62131615 62131657 -61944515 + ID_B1 SINE B4 173 224 0 3 1059 257 304 11 11 chr9 62132200 62132293 -61943879 - L2 LINE L2 -1421 1998 1906 3 1059 225 250 94 83 chr9 62132541 62132637 -61943535 + MLT1A0 LTR MaLR 4 100 -274 3 1059 329 250 235 34 chr9 62132683 62132832 -61943340 + MLT1A0 LTR MaLR 179 357 -8 3 1059 929 262 30 30 chr9 62132878 62133114 -61943058 + B4A SINE B4 1 236 -56 3 1059 693 180 141 53 chr9 62133647 62133817 -61942355 + B3A SINE B2 14 198 0 3 1059 1525 233 140 0 chr9 62133957 62134322 -61941850 - MTD LTR MaLR -3 416 1 3 1059 568 238 181 110 chr9 62134325 62134463 -61941709 - B4A SINE B4 -44 248 96 3 1059 1369 84 16 5 chr9 62134463 62134655 -61941517 - B2_Mm2 SINE B2 0 195 2 3 1059 568 238 181 110 chr9 62134655 62134743 -61941429 - B4A SINE B4 -197 95 6 3 1059 228 319 68 14 chr9 62134819 62134892 -61941280 + B1F SINE Alu 10 86 -63 3 1059 590 254 165 28 chr9 62135465 62135647 -61940525 - B3 SINE B2 -5 211 5 3 1059 898 268 79 36 chr9 62136156 62136435 -61939737 + B4 SINE B4 2 292 0 3 1059 312 164 0 0 chr9 62136438 62136505 -61939667 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1059 219 103 0 0 chr9 62136813 62136852 -61939320 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1059 1574 43 0 16 chr9 62136859 62137049 -61939123 + B2_Mm1a SINE B2 2 188 -5 3 1059 328 325 95 0 chr9 62137220 62137346 -61938826 - MLT1B LTR MaLR -12 378 241 3 1059 428 155 120 30 chr9 62137415 62137515 -61938657 + B1F1 SINE Alu 35 143 -6 3 1059 236 243 0 54 chr9 62137515 62137589 -61938583 + G-rich Low_complexity Low_complexity 3 72 0 3 1059 517 213 139 56 chr9 62137591 62137735 -61938437 - MLT1B LTR MaLR -234 156 1 3 1059 506 209 207 7 chr9 62138743 62138883 -61937289 - MTD LTR MaLR -14 405 238 3 1059 4108 76 30 13 chr9 62138894 62139451 -61936721 - RMER2 LTR ERV1 0 567 1 3 1059 994 151 0 0 chr9 62139604 62139750 -61936422 + B1_Mur4 SINE Alu 3 148 -2 3 1059 783 273 19 19 chr9 62140159 62140368 -61935804 - MTD LTR MaLR -210 209 1 3 1059 195 129 0 0 chr9 62140576 62140607 -61935565 + (CACCC)n Simple_repeat Simple_repeat 2 32 0 3 1059 332 245 234 0 chr9 62140737 62140831 -61935341 + B3A SINE B2 23 138 -60 3 1059 342 0 0 0 chr9 62140839 62140877 -61935295 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1059 1179 219 35 38 chr9 62140905 62141194 -61934978 - B4A SINE B4 -4 288 1 3 1059 613 226 8 30 chr9 62141548 62141683 -61934489 + RSINE1 SINE B4 2 134 -31 3 1059 1392 66 11 16 chr9 62141736 62141922 -61934250 + B2_Mm1t SINE B2 2 186 -7 3 1059 184 170 19 19 chr9 62142276 62142330 -61933842 + T-rich Low_complexity Low_complexity 2 55 0 3 1059 419 254 161 0 chr9 62143386 62143504 -61932668 - B1_Mus1 SINE Alu 0 148 12 3 1059 319 286 94 45 chr9 62143994 62144170 -61932002 + L1MEf LINE L1 1978 2138 -4104 3 1059 476 242 47 39 chr9 62144418 62144547 -61931625 - LTR48 LTR ERV1 -655 132 3 3 1059 878 258 161 36 chr9 62144650 62145107 -61931065 - RMER5 LTR ERV1 -8 526 13 3 1059 1181 43 155 0 chr9 62145322 62145483 -61930689 + B2_Mm2 SINE B2 2 187 -8 3 1059 347 279 119 6 chr9 62145598 62145757 -61930415 + L1M5 LINE L1 2461 2637 -3509 3 1059 328 336 55 95 chr9 62145769 62146117 -61930055 - ORR1E LTR MaLR 0 359 26 3 1059 1240 228 213 29 chr9 62146127 62146651 -61929521 + RMER19C LTR ERVK 28 611 0 3 1059 703 184 34 34 chr9 62146734 62146880 -61929292 - B1_Mur1 SINE Alu -3 146 1 3 1059 706 130 130 0 chr9 62147131 62147246 -61928926 - B1_Mur3 SINE Alu 0 149 20 3 1059 698 118 113 45 chr9 62147288 62147421 -61928751 + B1_Mur4 SINE Alu 3 144 -6 3 1059 269 89 0 22 chr9 62147425 62147434 -61928738 + (GGAA)n Simple_repeat Simple_repeat 1 9 0 3 1059 849 20 0 0 chr9 62147434 62147533 -61928639 + (GA)n Simple_repeat Simple_repeat 1 99 0 3 1059 269 89 0 22 chr9 62147533 62147569 -61928603 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 3 1059 830 215 114 10 chr9 62147646 62147839 -61928333 + MTEa LTR MaLR 12 224 -155 3 1059 777 274 60 14 chr9 62147835 62148053 -61928119 + MLT1A0 LTR MaLR 77 304 -61 3 1059 690 294 50 11 chr9 62148057 62148239 -61927933 - ID_B1 SINE B4 -21 203 15 3 1059 586 182 182 0 chr9 62148259 62148385 -61927787 + B1_Mur1 SINE Alu 1 149 0 3 1059 1042 90 14 0 chr9 62148497 62148641 -61927531 - B1_Mus2 SINE Alu -1 146 1 3 1059 491 99 14 0 chr9 62148659 62148730 -61927442 + ORR1B1 LTR MaLR 1 72 -322 3 1059 653 174 64 14 chr9 62148888 62149028 -61927144 + ORR1B1 LTR MaLR 52 198 -196 3 1059 1292 111 26 0 chr9 62149153 62149343 -61926829 + B2_Mm2 SINE B2 1 195 0 3 1059 35 0 0 0 chr9 62149347 62149382 -61926790 + AT_rich Low_complexity Low_complexity 1 35 0 3 1059 1261 41 0 0 chr9 62149451 62149597 -61926575 + B1_Mus2 SINE Alu 2 147 0 3 1059 207 0 0 0 chr9 62149990 62150013 -61926159 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1059 2543 162 243 9 chr9 62150170 62150743 -61925429 - RMER1B Other Other 0 1066 360 3 1059 555 29 0 0 chr9 62150787 62150856 -61925316 + (TTTA)n Simple_repeat Simple_repeat 4 72 0 3 1059 1171 64 0 0 chr9 62150858 62150999 -61925173 - B1_Mus1 SINE Alu -6 142 2 3 1059 207 0 0 0 chr9 62151002 62151025 -61925147 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1059 469 226 26 2 chr9 62151294 62151415 -61924757 + B3A SINE B2 2 129 -64 3 1059 794 272 39 35 chr9 62151592 62151878 -61924294 + RMER15 LTR ERVL 289 575 0 3 1059 22 70 0 0 chr9 62151907 62151950 -61924222 + AT_rich Low_complexity Low_complexity 1 43 0 3 1059 447 150 38 0 chr9 62151978 62152058 -61924114 + B1_Mus2 SINE Alu 65 147 0 3 1059 1614 31 5 20 chr9 62152299 62152495 -61923677 + B2_Mm1a SINE B2 1 193 0 3 1059 558 0 0 0 chr9 62152887 62152949 -61923223 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1059 348 200 237 152 chr9 62152962 62153139 -61923033 + B3A SINE B2 1 192 -6 3 1059 1355 81 32 0 chr9 62153174 62153359 -61922813 + B2_Mm1a SINE B2 2 192 -1 3 1059 352 233 27 0 chr9 62153403 62153476 -61922696 + RSINE1 SINE B4 78 152 -13 3 1059 24 32 0 0 chr9 62153483 62153514 -61922658 + AT_rich Low_complexity Low_complexity 1 31 0 3 1059 602 181 129 0 chr9 62153665 62153781 -61922391 - B1_Mur4 SINE Alu -6 144 14 3 1059 324 303 88 44 chr9 62153781 62153816 -61922356 - ID_B1 SINE B4 -1 196 58 3 1059 403 239 22 11 chr9 62154819 62154908 -61921264 + B4A SINE B4 1 90 -202 3 1059 1149 48 7 20 chr9 62154930 62155079 -61921093 + B1_Mm SINE Alu 1 147 0 3 1059 413 322 30 30 chr9 62155079 62155348 -61920824 + L1MDa LINE L1 1720 1988 -4645 4 1059 232 214 0 0 chr9 62155356 62155398 -61920774 - B3A SINE B2 -156 42 1 4 1059 1162 21 0 88 chr9 62155422 62155581 -61920591 - B1_Mus1 SINE Alu -1 147 3 4 1059 1039 151 36 31 chr9 62155626 62155818 -61920354 + B2_Mm2 SINE B2 1 193 -2 4 1059 327 259 129 27 chr9 62155819 62155966 -61920206 + L1MDa LINE L1 2091 2252 -4381 4 1059 522 249 96 72 chr9 62156069 62156277 -61919895 + B4A SINE B4 18 230 -62 4 1059 234 0 0 0 chr9 62156297 62156323 -61919849 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1059 531 0 0 0 chr9 62156323 62156381 -61919791 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1059 701 159 0 66 chr9 62156381 62156502 -61919670 - B3 SINE B2 -103 113 1 4 1059 399 250 82 106 chr9 62156504 62156786 -61919386 + L1MDa LINE L1 3157 3431 -3106 4 1059 546 239 25 8 chr9 62156788 62156906 -61919266 + B3A SINE B2 1 120 -78 4 1059 488 227 0 0 chr9 62156906 62156994 -61919178 - B1_Mur3 SINE Alu -59 90 3 4 1059 712 276 35 0 chr9 62157029 62157199 -61918973 + B3A SINE B2 1 176 -22 4 1059 212 265 29 14 chr9 62157264 62157333 -61918839 + B4A SINE B4 14 83 -209 4 1059 229 337 22 22 chr9 62157326 62157417 -61918755 - YREP_Mm Unknown Unknown -1510 302 212 4 1059 555 214 0 0 chr9 62157337 62157435 -61918737 + ID_B1 SINE B4 108 205 -19 4 1059 408 140 0 0 chr9 62157437 62157530 -61918642 + (CAGA)n Simple_repeat Simple_repeat 4 96 0 4 1059 449 331 16 41 chr9 62157537 62157783 -61918389 - L1MC4 LINE L1 -496 7546 7307 4 1059 874 291 76 8 chr9 62157796 62158032 -61918140 + B4A SINE B4 2 253 -39 4 1059 243 103 0 0 chr9 62158036 62158075 -61918097 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1059 546 152 0 0 chr9 62158077 62158117 -61918055 + A-rich Low_complexity Low_complexity 1 40 0 4 1059 1131 102 0 0 chr9 62158117 62158264 -61917908 + B1_Mus2 SINE Alu 1 147 0 4 1059 546 152 0 0 chr9 62158264 62158322 -61917850 + A-rich Low_complexity Low_complexity 41 98 0 4 1059 412 103 0 0 chr9 62158322 62158380 -61917792 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 4 1059 777 153 19 0 chr9 62158381 62158538 -61917634 + GA-rich Low_complexity Low_complexity 1 160 0 4 1059 619 303 7 19 chr9 62158567 62158722 -61917450 + RSINE1 SINE B4 2 154 -11 4 1059 276 30 0 0 chr9 62158740 62158773 -61917399 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1059 1330 65 65 0 chr9 62158793 62158962 -61917210 + B2_Mm2 SINE B2 2 181 -14 4 1059 606 313 20 20 chr9 62159038 62159191 -61916981 - RSINE1 SINE B4 -10 155 3 4 1059 270 261 139 0 chr9 62159254 62159369 -61916803 - L1MC4 LINE L1 -970 7072 6942 4 1059 271 44 44 0 chr9 62159389 62159434 -61916738 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1059 1196 37 0 0 chr9 62159434 62159570 -61916602 - B1_Mm SINE Alu -11 136 1 4 1059 961 174 40 15 chr9 62160379 62160578 -61915594 + B3 SINE B2 2 205 -11 4 1059 276 310 23 121 chr9 62161202 62161261 -61914911 - RSINE1 SINE B4 0 165 108 4 1059 1544 62 0 0 chr9 62161261 62161453 -61914719 - B2_Mm1a SINE B2 -1 192 1 4 1059 276 310 23 121 chr9 62161453 62161524 -61914648 - RSINE1 SINE B4 -58 107 48 4 1059 754 234 103 0 chr9 62161524 62161699 -61914473 + B3 SINE B2 1 193 -23 4 1059 396 192 26 0 chr9 62161706 62161784 -61914388 - B1_Mus2 SINE Alu 0 147 68 4 1059 781 201 15 0 chr9 62161894 62162028 -61914144 + RSINE1 SINE B4 3 138 -27 4 1059 23 54 0 0 chr9 62162050 62162087 -61914085 + AT_rich Low_complexity Low_complexity 1 37 0 4 1059 373 297 80 35 chr9 62162128 62162327 -61913845 - L1MB7 LINE L1 -69 6115 5908 4 1059 506 114 286 0 chr9 62162399 62162504 -61913668 + B1_Mus1 SINE Alu 1 135 -13 4 1059 183 156 0 0 chr9 62162511 62162543 -61913629 + GA-rich Low_complexity Low_complexity 4 35 0 4 1059 400 207 9 9 chr9 62162538 62162650 -61913522 + G-rich Low_complexity Low_complexity 2 113 0 4 1059 724 164 5 43 chr9 62162657 62162842 -61913330 + A-rich Low_complexity Low_complexity 1 178 0 4 1059 228 267 118 45 chr9 62163058 62163168 -61913004 - LTR78 LTR ERV1 -336 968 851 4 1059 406 256 11 0 chr9 62163171 62163261 -61912911 + ID_B1 SINE B4 121 211 -13 4 1059 573 255 98 53 chr9 62163289 62163568 -61912604 - L1MB7 LINE L1 -347 5837 5504 4 1059 556 211 40 24 chr9 62163714 62163835 -61912337 + ID_B1 SINE B4 2 124 -100 4 1059 3104 48 43 0 chr9 62163835 62164228 -61911944 + RLTR10C LTR ERVK 1 410 -26 4 1059 297 135 0 0 chr9 62164795 62164847 -61911325 + (GGA)n Simple_repeat Simple_repeat 3 54 0 4 1059 503 0 32 0 chr9 62165039 62165101 -61911071 + (GAAA)n Simple_repeat Simple_repeat 4 67 0 4 1059 975 18 0 0 chr9 62165101 62165213 -61910959 + (GGGA)n Simple_repeat Simple_repeat 4 116 0 4 1059 523 202 13 7 chr9 62165246 62165350 -61910822 + PB1D7 SINE Alu 23 120 0 4 1059 1144 111 57 28 chr9 62165350 62165526 -61910646 + B2_Mm2 SINE B2 2 182 -13 4 1059 292 291 48 103 chr9 62165526 62165652 -61910520 + FAM SINE Alu 251 311 0 4 1059 806 211 7 26 chr9 62165657 62165808 -61910364 + B1_Mur2 SINE Alu 1 148 -1 4 1059 452 244 31 54 chr9 62165937 62166067 -61910105 - RSINE1 SINE B4 -5 160 34 4 1059 245 329 56 14 chr9 62166174 62166316 -61909856 - L1M5 LINE L1 -272 5852 5705 4 1059 642 276 20 7 chr9 62166382 62166535 -61909637 + RSINE1 SINE B4 4 158 -7 4 1059 501 68 0 0 chr9 62166547 62166621 -61909551 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 1059 272 243 81 54 chr9 62166666 62166740 -61909432 + ORR1E LTR MaLR 1 76 -283 4 1059 190 160 40 0 chr9 62167055 62167105 -61909067 + CT-rich Low_complexity Low_complexity 3 54 0 4 1059 477 0 0 0 chr9 62167555 62167608 -61908564 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1059 383 270 139 78 chr9 62167615 62167900 -61908272 + B4A SINE B4 2 276 -16 4 1059 27 0 0 0 chr9 62167901 62167928 -61908244 + AT_rich Low_complexity Low_complexity 1 27 0 4 1059 905 181 87 36 chr9 62168062 62168257 -61907915 - RMER10B LTR ERVL 0 398 194 4 1059 1900 43 0 0 chr9 62168264 62168498 -61907674 - ORR1A1 LTR MaLR -112 234 1 4 1059 365 248 74 20 chr9 62168573 62168721 -61907451 - L1ME1 LINE L1 -247 5932 5777 4 1059 1109 241 0 18 chr9 62168767 62168987 -61907185 - B3 SINE B2 0 216 1 4 1059 1001 135 7 0 chr9 62169289 62169437 -61906735 - B1_Mur4 SINE Alu 0 150 2 4 1059 1205 244 121 45 chr9 62169593 62170039 -61906133 + Lx8 LINE L1 6297 6776 -697 4 1059 691 177 87 16 chr9 62170169 62170295 -61905877 - B1_Mus2 SINE Alu -6 141 7 4 1059 1200 110 40 6 chr9 62170321 62170495 -61905677 + B2_Mm2 SINE B2 2 181 -14 4 1059 345 24 0 0 chr9 62170503 62170545 -61905627 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1059 766 283 70 31 chr9 62170553 62170812 -61905360 + B4A SINE B4 1 269 -23 4 1059 731 224 109 5 chr9 62171159 62171343 -61904829 - B3 SINE B2 -12 204 2 4 1059 641 276 62 11 chr9 62171390 62171566 -61904606 + RMER5 LTR ERV1 13 197 -337 4 1059 1134 215 75 99 chr9 62171623 62171811 -61904361 + RMER5 LTR ERV1 195 378 -156 4 1059 895 132 27 14 chr9 62171811 62171957 -61904215 - B1_Mus1 SINE Alu 0 148 1 4 1059 1134 215 75 99 chr9 62171957 62172113 -61904059 + RMER5 LTR ERV1 379 531 -3 4 1059 234 91 0 0 chr9 62172245 62172278 -61903894 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 1059 680 169 68 0 chr9 62172735 62172853 -61903319 - RSINE1 SINE B4 -36 129 4 4 1059 473 204 10 144 chr9 62172928 62173048 -61903124 - L1M2 LINE L1 -1441 4702 4596 4 1059 385 298 7 54 chr9 62173048 62173197 -61902975 - B1F2 SINE Alu -4 145 4 4 1059 473 204 10 144 chr9 62173197 62173271 -61902901 - L1M2 LINE L1 -1548 4595 4534 4 1059 439 317 0 54 chr9 62173295 62173425 -61902747 - RSINE1 SINE B4 0 165 43 4 1059 798 240 22 0 chr9 62173835 62174014 -61902158 + B3A SINE B2 1 183 -15 4 1059 1026 149 21 32 chr9 62174044 62174231 -61901941 + B2_Mm2 SINE B2 4 188 -7 4 1059 1529 33 44 0 chr9 62174236 62174419 -61901753 + B2_Mm1a SINE B2 2 192 -1 4 1059 642 215 16 8 chr9 62174451 62174573 -61901599 + B1_Mus1 SINE Alu 1 123 -25 4 1059 312 145 32 0 chr9 62174596 62174658 -61901514 - ORR1A3 LTR MaLR -265 64 1 4 1059 10060 125 67 121 chr9 62174658 62176733 -61899439 - ORR1A3-int LTR MaLR 0 1963 1 4 1059 2351 108 0 6 chr9 62176733 62177060 -61899112 - ORR1A3 LTR MaLR 0 326 2 4 1059 2408 201 87 62 chr9 62177060 62177638 -61898534 + RMER19C LTR ERVK 1 594 -17 4 1059 1144 88 7 0 chr9 62177638 62177785 -61898387 + B1_Mus1 SINE Alu 1 148 0 4 1059 1169 75 0 0 chr9 62177812 62177958 -61898214 - B1_Mus2 SINE Alu -1 146 1 4 1059 242 267 13 20 chr9 62178012 62178040 -61898132 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 4 1059 1083 71 36 0 chr9 62178040 62178180 -61897992 - B1_Mus2 SINE Alu -2 145 1 4 1059 242 267 13 20 chr9 62178180 62178210 -61897962 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1059 784 191 0 58 chr9 62178210 62178366 -61897806 - B1_Mur3 SINE Alu 0 149 3 4 1059 242 267 13 20 chr9 62178366 62178432 -61897740 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 4 1059 538 282 153 6 chr9 62178432 62178589 -61897583 - B3A SINE B2 -18 180 1 4 1059 242 267 13 20 chr9 62178589 62178611 -61897561 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 4 1059 275 164 16 0 chr9 62178649 62178710 -61897462 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1059 287 325 92 13 chr9 62178710 62178863 -61897309 - RSINE1 SINE B4 0 165 1 4 1059 289 305 12 0 chr9 62178867 62178880 -61897292 - ID4 SINE ID 0 83 1 4 1059 330 232 14 0 chr9 62178880 62178949 -61897223 - ID SINE ID -154 70 1 4 1059 533 230 120 53 chr9 62179113 62179246 -61896926 + B1_Mur2 SINE Alu 8 149 0 4 1059 352 170 156 21 chr9 62179298 62179394 -61896778 + PB1D7 SINE Alu 11 119 -1 4 1059 235 335 123 53 chr9 62179436 62179606 -61896566 + B3A SINE B2 17 198 0 4 1059 380 192 48 39 chr9 62179626 62179729 -61896443 + PB1D7 SINE Alu 16 119 -1 5 1059 756 118 110 0 chr9 62179735 62179862 -61896310 + B1_Mus2 SINE Alu 7 147 0 5 1059 549 0 0 0 chr9 62179877 62179938 -61896234 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 5 1059 521 265 58 7 chr9 62179971 62180108 -61896064 + B4A SINE B4 1 144 -148 5 1059 314 237 0 0 chr9 62180410 62180469 -61895703 - 5S rRNA rRNA -31 90 32 5 1059 534 53 0 26 chr9 62180543 62180620 -61895552 - B1_Mur3 SINE Alu 0 149 75 5 1059 1646 32 0 0 chr9 62180947 62181134 -61895038 + B2_Mm1a SINE B2 2 188 -5 5 1059 468 225 41 16 chr9 62181316 62181438 -61894734 + B1F1 SINE Alu 16 140 -9 5 1059 349 230 54 0 chr9 62181464 62181538 -61894634 + ID4 SINE ID 6 83 0 5 1059 368 264 169 14 chr9 62181614 62181756 -61894416 - RSINE1 SINE B4 0 165 2 5 1059 511 321 24 36 chr9 62181896 62182061 -61894111 - MLT1J2 LTR MaLR -283 165 3 5 1059 1230 246 72 6 chr9 62182235 62182582 -61893590 + ORR1D2 LTR MaLR 1 370 0 5 1059 294 143 0 0 chr9 62182665 62182714 -61893458 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1059 234 324 37 37 chr9 62182822 62182931 -61893241 - B1F1 SINE Alu -23 126 18 5 1059 395 189 33 22 chr9 62183286 62183378 -61892794 + ID_B1 SINE B4 118 210 -14 5 1059 629 240 32 0 chr9 62183780 62183905 -61892267 + RSINE1 SINE B4 2 130 -35 5 1059 456 189 125 7 chr9 62184280 62184381 -61891791 - B1_Mus1 SINE Alu -10 110 1 5 1059 361 255 57 38 chr9 62184289 62184395 -61891777 - MT2B LTR ERVL -341 260 153 5 1059 656 120 85 8 chr9 62184482 62184600 -61891572 - B1_Mus1 SINE Alu 0 148 22 5 1059 544 202 41 1 chr9 62184700 62184818 -61891354 - B3 SINE B2 -75 123 1 5 1059 617 256 36 0 chr9 62184836 62184973 -61891199 - ID_B1 SINE B4 -2 222 81 5 1059 1015 240 9 9 chr9 62184970 62185180 -61890992 - B3 SINE B2 0 216 7 5 1059 21 0 0 0 chr9 62185203 62185224 -61890948 + AT_rich Low_complexity Low_complexity 1 21 0 5 1059 434 56 0 0 chr9 62185227 62185281 -61890891 + B1_Mus1 SINE Alu 1 54 -94 5 1059 844 72 0 0 chr9 62185281 62185392 -61890780 + B2_Mm1a SINE B2 77 187 -6 5 1059 1084 199 41 0 chr9 62185392 62185588 -61890584 - B3 SINE B2 -11 205 2 5 1059 634 238 88 7 chr9 62185860 62186008 -61890164 + RSINE1 SINE B4 4 163 -2 5 1059 681 250 35 50 chr9 62186459 62186661 -61889511 + B3A SINE B2 1 198 0 5 1059 606 97 0 61 chr9 62186880 62186979 -61889193 - B1_Mus2 SINE Alu -5 142 50 5 1059 280 226 9 105 chr9 62186979 62186990 -61889182 - ID_B1 SINE B4 -1 219 121 5 1059 405 58 0 0 chr9 62187205 62187257 -61888915 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1059 201 233 22 65 chr9 62188822 62188914 -61887258 + C-rich Low_complexity Low_complexity 2 89 0 5 1059 266 286 0 0 chr9 62190100 62190163 -61886009 + CT-rich Low_complexity Low_complexity 1 63 0 5 1059 405 315 137 22 chr9 62193533 62193760 -61882412 - MIR SINE MIR 0 262 10 5 1059 200 254 50 17 chr9 62194277 62194337 -61881835 + MER5A DNA MER1_type 27 88 -101 5 1059 185 304 36 0 chr9 62194287 62194343 -61881829 - MER5A DNA MER1_type -25 164 107 5 1059 360 247 148 58 chr9 62194460 62194615 -61881557 + MER58D DNA MER1_type 157 325 -61 5 1059 1468 38 11 21 chr9 62195600 62195789 -61880383 - B2_Mm2 SINE B2 -8 187 1 5 1059 771 296 19 10 chr9 62196424 62196632 -61879540 + ID_B1 SINE B4 13 222 -2 5 1059 405 230 43 80 chr9 62197331 62197495 -61878677 + B4A SINE B4 1 160 -132 5 1059 339 85 0 0 chr9 62197576 62197623 -61878549 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1059 251 273 188 53 chr9 62197942 62197957 -61878215 - B3 SINE B2 -23 193 179 5 1059 522 0 0 0 chr9 62197957 62198015 -61878157 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1059 501 257 113 35 chr9 62198020 62198161 -61878011 - RSINE1 SINE B4 -6 159 8 5 1059 245 279 74 25 chr9 62198256 62198337 -61877835 + PB1D10 SINE Alu 33 117 0 5 1059 306 0 0 0 chr9 62198940 62198974 -61877198 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1059 793 142 23 23 chr9 62199414 62199544 -61876628 - B1_Mur3 SINE Alu -15 134 5 5 1059 375 363 0 16 chr9 62199798 62199924 -61876248 - B1F1 SINE Alu -13 136 13 5 1059 236 339 0 0 chr9 62199975 62200034 -61876138 - B1F1 SINE Alu -86 63 5 5 1059 480 262 16 39 chr9 62200048 62200175 -61875997 - PB1 SINE Alu -2 125 2 5 1059 878 145 6 22 chr9 62200358 62200500 -61875672 + polypyrimidine Low_complexity Low_complexity 41 180 0 5 1059 1249 67 0 22 chr9 62200500 62200683 -61875489 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 1059 878 145 6 22 chr9 62200683 62200723 -61875449 + polypyrimidine Low_complexity Low_complexity 1 40 0 5 1059 587 238 79 0 chr9 62200726 62200852 -61875320 - B1_Mur1 SINE Alu -13 136 1 5 1059 378 0 0 0 chr9 62201323 62201365 -61874807 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1059 296 266 117 49 chr9 62201832 62201994 -61874178 + MER5A DNA MER1_type 3 175 -14 5 1059 1303 103 16 0 chr9 62202268 62202453 -61873719 + B2_Mm1t SINE B2 2 189 -4 5 1059 665 275 56 15 chr9 62202460 62202687 -61873485 + B4A SINE B4 2 261 -31 5 1059 252 59 0 0 chr9 62203867 62203901 -61872271 - L2b LINE L2 -216 3159 3126 5 1059 273 241 86 70 chr9 62203944 62204083 -61872089 + PB1 SINE Alu 5 149 0 5 1059 429 213 154 23 chr9 62204090 62204220 -61871952 + ID_B1 SINE B4 8 154 -70 5 1059 303 28 0 0 chr9 62204416 62204452 -61871720 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1059 221 341 64 35 chr9 62204853 62205026 -61871146 - MIR SINE MIR -69 193 16 5 1059 183 203 127 36 chr9 62205583 62205674 -61870498 - MIR SINE MIR -59 209 106 5 1059 685 222 104 35 chr9 62206477 62206678 -61869494 + ID_B1 SINE B4 2 216 -8 5 1059 484 246 80 0 chr9 62206847 62206985 -61869187 - RSINE1 SINE B4 -14 151 3 5 1059 601 282 18 4 chr9 62207743 62207882 -61868290 - RSINE1 SINE B4 -21 144 1 5 1059 241 214 0 0 chr9 62207921 62207963 -61868209 - ID2 SINE ID -36 47 6 5 1059 1130 88 7 0 chr9 62208170 62208317 -61867855 + B1_Mus1 SINE Alu 1 148 0 5 1059 1002 95 0 86 chr9 62208343 62208505 -61867667 + B1_Mur3 SINE Alu 2 149 0 5 1059 216 248 18 27 chr9 62208643 62208755 -61867417 + CT-rich Low_complexity Low_complexity 4 114 0 5 1059 802 267 16 32 chr9 62209265 62209451 -61866721 - ID_B1 SINE B4 -35 189 7 5 1059 261 263 90 10 chr9 62210718 62210818 -61865354 - MIR SINE MIR -74 134 27 5 1059 583 244 118 37 chr9 62211175 62211362 -61864810 + B3 SINE B2 1 202 -14 5 1059 22 0 0 0 chr9 62212049 62212071 -61864101 + GC_rich Low_complexity Low_complexity 1 22 0 5 1059 617 233 51 14 chr9 62212149 62212332 -61863840 + B3A SINE B2 2 183 -12 5 1059 557 228 50 85 chr9 62212453 62212654 -61863518 - B3A SINE B2 -4 194 1 5 1059 869 147 66 7 chr9 62213469 62213620 -61862552 - URR1B DNA MER1_type -65 160 1 5 1059 425 266 11 0 chr9 62213882 62213976 -61862196 - ID_B1 SINE B4 -3 221 127 5 1059 263 231 62 0 chr9 62214047 62214112 -61862060 + MER45A DNA Tip100 110 178 0 5 1059 324 0 0 0 chr9 62214219 62214255 -61861917 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 1059 266 257 42 14 chr9 62216335 62216406 -61859766 - ID_B1 SINE B4 -5 219 147 5 1059 522 0 0 0 chr9 62216561 62216619 -61859553 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1059 262 294 76 0 chr9 62218436 62218528 -61857644 - MER3 DNA MER1_type -110 99 1 5 1059 202 200 0 0 chr9 62218702 62218742 -61857430 + G-rich Low_complexity Low_complexity 2 41 0 5 1059 210 37 0 0 chr9 62218931 62218958 -61857214 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1059 298 134 340 28 chr9 62219012 62219118 -61857054 - B2_Mm2 SINE B2 -10 185 47 5 1059 1135 124 12 0 chr9 62219165 62219334 -61856838 - B2_Mm1t SINE B2 -14 179 9 5 1059 248 250 0 106 chr9 62219263 62219348 -61856824 - ID4_ SINE ID -6 77 2 5 1059 219 188 0 0 chr9 62222491 62222539 -61853633 + GA-rich Low_complexity Low_complexity 1 48 0 5 1059 751 188 0 8 chr9 62222827 62222956 -61853216 - RSINE1 SINE B4 -36 129 2 5 1059 849 20 0 0 chr9 62222966 62223065 -61853107 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 5 1059 895 180 0 7 chr9 62223065 62223209 -61852963 - B1_Mur4 SINE Alu -6 144 1 5 1059 321 47 0 0 chr9 62223972 62224015 -61852157 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1059 965 249 22 5 chr9 62224797 62225019 -61851153 - B4A SINE B4 0 292 67 5 1059 191 340 30 96 chr9 62226402 62226568 -61849604 + L2 LINE L2 496 650 -2769 5 1059 504 0 0 0 chr9 62226862 62226918 -61849254 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 5 1059 463 292 9 0 chr9 62227343 62227449 -61848723 - RSINE1 SINE B4 -48 117 11 5 1059 514 165 44 0 chr9 62227511 62227602 -61848570 - B1_Mur1 SINE Alu -21 128 34 5 1059 857 215 147 24 chr9 62228165 62228417 -61847755 + B4 SINE B4 5 287 -5 5 1059 423 266 95 16 chr9 62228864 62228990 -61847182 + ID_B1 SINE B4 89 224 0 6 1059 270 289 0 0 chr9 62229019 62229095 -61847077 - MIRc SINE MIR -142 126 51 6 1059 511 259 83 100 chr9 62229953 62230163 -61846009 - B3A SINE B2 -5 193 7 6 1059 617 151 167 0 chr9 62230201 62230327 -61845845 + B1_Mur1 SINE Alu 2 148 -1 6 1059 397 357 17 28 chr9 62230817 62230993 -61845179 - MIRb SINE MIR -64 204 31 6 1059 272 191 0 0 chr9 62231100 62231142 -61845030 + RSINE1 SINE B4 9 50 -115 6 1059 1194 112 21 11 chr9 62231218 62231408 -61844764 + B2_Mm2 SINE B2 2 193 -2 6 1059 1275 34 0 13 chr9 62231409 62231558 -61844614 + B1_Mus2 SINE Alu 1 147 0 6 1059 1593 193 34 91 chr9 62232272 62232762 -61843410 + MT2B LTR ERVL 1 601 0 6 1059 180 329 82 49 chr9 62232762 62233005 -61843167 - L2 LINE L2 -1774 1645 1395 6 1059 957 262 14 0 chr9 62233052 62233262 -61842910 + ID_B1 SINE B4 1 213 -11 6 1059 306 0 0 0 chr9 62233262 62233296 -61842876 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1059 453 283 19 0 chr9 62233477 62233583 -61842589 + ID_B1 SINE B4 110 217 -7 6 1059 229 279 48 48 chr9 62233734 62233817 -61842355 + MTEa LTR MaLR 290 372 -7 6 1059 998 253 94 75 chr9 62234044 62234416 -61841756 - MTEa LTR MaLR 0 379 1 6 1059 429 316 59 0 chr9 62234469 62234605 -61841567 + RSINE1 SINE B4 21 164 -1 6 1059 321 26 0 0 chr9 62234619 62234657 -61841515 + (CATA)n Simple_repeat Simple_repeat 2 39 0 6 1059 272 314 21 82 chr9 62235707 62235854 -61840318 - ORR1D2 LTR MaLR -167 192 54 6 1059 237 288 45 0 chr9 62235922 62235988 -61840184 - ORR1D2 LTR MaLR -290 69 1 6 1059 781 288 68 30 chr9 62236082 62236329 -61839843 - ID_B1 SINE B4 -26 266 5 6 1059 237 99 20 276 chr9 62236374 62236472 -61839700 - PB1D10 SINE Alu 0 117 45 6 1059 742 261 16 115 chr9 62236385 62236628 -61839544 - B4A SINE B4 -72 220 2 6 1059 378 0 0 0 chr9 62236637 62236679 -61839493 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1059 389 179 0 29 chr9 62236688 62236757 -61839415 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 6 1059 1016 251 116 27 chr9 62236763 62237176 -61838996 + L1ME2z LINE L1 5921 6370 -74 6 1059 274 274 24 12 chr9 62237399 62237484 -61838688 + RSINE1 SINE B4 59 144 -21 6 1059 441 0 0 0 chr9 62237486 62237535 -61838637 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1059 584 252 0 0 chr9 62237564 62237675 -61838497 + B1_Mur1 SINE Alu 27 137 -12 6 1059 201 74 0 0 chr9 62237678 62237705 -61838467 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 6 1059 201 211 0 0 chr9 62238318 62238375 -61837797 + (TTG)n Simple_repeat Simple_repeat 3 59 0 6 1059 709 204 93 38 chr9 62238471 62238504 -61837668 - B3A SINE B2 -1 197 154 6 1059 432 0 0 0 chr9 62238504 62238552 -61837620 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1059 709 204 93 38 chr9 62238552 62238701 -61837471 - B3A SINE B2 -45 153 5 6 1059 1207 88 43 27 chr9 62238965 62239152 -61837020 - B2_Mm2 SINE B2 -4 191 2 6 1059 826 224 85 15 chr9 62239499 62239698 -61836474 + B3 SINE B2 1 213 -3 6 1059 919 138 14 0 chr9 62239721 62239859 -61836313 - B1_Mus2 SINE Alu -6 141 2 6 1059 695 255 59 15 chr9 62239964 62240167 -61836005 - ID_B1 SINE B4 -12 212 1 6 1059 390 42 0 0 chr9 62240341 62240389 -61835783 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1059 566 267 12 28 chr9 62240648 62240818 -61835354 + ID_B1 SINE B4 4 171 -121 6 1059 396 0 0 0 chr9 62240953 62240997 -61835175 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1059 396 130 0 0 chr9 62241435 62241504 -61834668 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 1059 423 256 40 109 chr9 62241511 62241686 -61834486 + RSINE1 SINE B4 3 165 0 6 1059 304 341 27 88 chr9 62242296 62242315 -61833857 - B1F1 SINE Alu -3 146 63 6 1059 858 258 19 75 chr9 62242315 62242379 -61833793 - ID_B1 SINE B4 -20 204 149 6 1059 1161 0 0 0 chr9 62242379 62242508 -61833664 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 6 1059 1098 47 0 0 chr9 62242514 62242642 -61833530 - B1_Mus2 SINE Alu -18 129 2 6 1059 304 341 27 88 chr9 62242642 62242699 -61833473 - B1F1 SINE Alu -87 62 8 6 1059 858 258 19 75 chr9 62242699 62242784 -61833388 - ID_B1 SINE B4 -76 148 3 6 1059 1463 49 0 27 chr9 62242807 62242995 -61833177 + B2_Mm2 SINE B2 3 185 -10 6 1059 833 68 8 0 chr9 62243104 62243221 -61832951 + (TTCC)n Simple_repeat Simple_repeat 1 118 0 6 1059 439 246 141 16 chr9 62243232 62243360 -61832812 - B1F SINE Alu -1 148 5 6 1059 190 333 61 61 chr9 62243450 62243581 -61832591 - MIR SINE MIR -31 231 101 6 1059 1221 36 0 0 chr9 62243678 62243817 -61832355 + B1_Mus2 SINE Alu 1 139 -8 6 1059 201 39 0 0 chr9 62243817 62243843 -61832329 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1059 711 155 0 0 chr9 62243846 62243949 -61832223 + B3 SINE B2 27 129 -87 6 1059 648 157 29 0 chr9 62244061 62244163 -61832009 + B3A SINE B2 1 105 -93 6 1059 351 207 0 22 chr9 62244185 62244368 -61831804 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 6 1059 561 164 11 17 chr9 62244416 62244590 -61831582 + (TGGG)n Simple_repeat Simple_repeat 3 175 0 6 1059 454 297 6 55 chr9 62244596 62244760 -61831412 - RSINE1 SINE B4 0 165 10 6 1059 216 0 0 0 chr9 62244776 62244800 -61831372 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1059 250 325 13 0 chr9 62244805 62244882 -61831290 + ID4 SINE ID 3 80 -3 6 1059 648 214 84 0 chr9 62244906 62245037 -61831135 - B1_Mur2 SINE Alu -7 142 1 6 1059 421 244 118 56 chr9 62245307 62245485 -61830687 + RLTR14 LTR ERV1 194 382 0 6 1059 1473 243 0 23 chr9 62245595 62245941 -61830231 - Lx9 LINE L1 -267 7377 7040 6 1059 367 205 200 24 chr9 62246014 62246139 -61830033 - B1F2 SINE Alu -1 148 2 6 1059 257 319 0 0 chr9 62246163 62246235 -61829937 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1059 350 247 0 0 chr9 62246242 62246315 -61829857 - B4 SINE B4 -2 290 218 6 1059 778 199 204 0 chr9 62246331 62246507 -61829665 - B3 SINE B2 0 216 5 6 1059 227 94 0 0 chr9 62246510 62246542 -61829630 - MTE2a LTR MaLR -42 337 306 6 1059 1442 78 21 0 chr9 62246553 62246744 -61829428 - B2_Mm2 SINE B2 0 195 1 6 1059 844 159 14 7 chr9 62246752 62246891 -61829281 - B1_Mus1 SINE Alu -6 142 3 6 1059 252 291 13 113 chr9 62246921 62246940 -61829232 - B3 SINE B2 0 216 202 6 1059 1157 68 0 33 chr9 62246940 62247091 -61829081 - B1_Mus2 SINE Alu 0 147 2 6 1059 402 261 8 75 chr9 62247091 62247234 -61828938 - B3A SINE B2 -15 201 71 6 1059 246 305 25 0 chr9 62247263 62247365 -61828807 - PB1D10 SINE Alu -7 113 6 6 1059 511 274 29 29 chr9 62247316 62247455 -61828717 - B4 SINE B4 -153 139 1 6 1059 484 353 34 66 chr9 62247467 62247816 -61828356 - Kanga1 DNA Tc2 -101 1644 1307 6 1059 744 260 25 7 chr9 62247915 62248101 -61828071 + ID_B1 SINE B4 28 214 -10 6 1059 576 0 0 0 chr9 62248103 62248167 -61828005 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 6 1059 192 352 45 0 chr9 62248261 62248349 -61827823 - MIRc SINE MIR -81 187 96 6 1059 577 304 122 0 chr9 62248769 62248950 -61827222 - ID_B1 SINE B4 0 224 22 6 1059 1128 92 0 0 chr9 62248967 62249130 -61827042 + (TCCCC)n Simple_repeat Simple_repeat 4 166 0 6 1059 414 317 20 0 chr9 62249415 62249516 -61826656 - B1_Mur3 SINE Alu -46 103 1 6 1059 222 274 0 0 chr9 62249518 62249569 -61826603 + CT-rich Low_complexity Low_complexity 1 51 0 6 1059 313 217 17 0 chr9 62249570 62249630 -61826542 - ID_B1 SINE B4 -3 221 161 6 1059 745 168 168 0 chr9 62249630 62249779 -61826393 - MTD LTR MaLR -209 210 37 6 1059 4398 151 75 67 chr9 62249779 62250674 -61825498 + RMER19B LTR ERVK 1 902 0 6 1059 22 70 0 0 chr9 62250742 62250785 -61825387 + AT_rich Low_complexity Low_complexity 1 43 0 6 1059 564 236 93 24 chr9 62250785 62250966 -61825206 - B3A SINE B2 -14 181 4 6 1059 230 0 0 32 chr9 62251015 62251046 -61825126 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1059 706 213 78 26 chr9 62251046 62251190 -61824982 - B3A SINE B2 -44 154 1 6 1059 1122 59 0 22 chr9 62251257 62251396 -61824776 - B1_Mus2 SINE Alu -11 136 1 6 1059 2719 178 91 54 chr9 62251440 62252034 -61824138 + RLTR18 LTR ERVK 1 616 0 6 1059 567 296 31 6 chr9 62252237 62252400 -61823772 - ID_B1 SINE B4 -38 186 20 6 1059 519 125 0 0 chr9 62252503 62252607 -61823565 + (GA)n Simple_repeat Simple_repeat 2 105 0 6 1059 413 305 186 8 chr9 62252610 62252739 -61823433 - RSINE1 SINE B4 -13 152 1 6 1059 859 136 0 8 chr9 62252772 62252879 -61823293 - B1_Mur3 SINE Alu -5 144 20 6 1059 269 368 56 66 chr9 62252879 62252898 -61823274 - B4A SINE B4 -16 276 256 6 1059 4830 109 9 65 chr9 62252898 62253379 -61822793 - RMER6A LTR ERVK 0 756 324 6 1059 1181 68 0 7 chr9 62253379 62253527 -61822645 - B1_Mus2 SINE Alu 0 147 1 6 1059 4830 109 9 65 chr9 62253527 62253846 -61822326 - RMER6A LTR ERVK -433 323 1 6 1059 269 368 56 66 chr9 62253846 62253868 -61822304 - B4A SINE B4 -37 255 236 6 1059 938 180 208 0 chr9 62253868 62254046 -61822126 - B3 SINE B2 -1 215 1 6 1059 558 301 13 8 chr9 62254046 62254201 -61821971 - ID_B1 SINE B4 -57 235 82 6 1059 1035 236 9 9 chr9 62254970 62255184 -61820988 + B3 SINE B2 3 216 0 6 1059 674 223 113 49 chr9 62255264 62255467 -61820705 - B3 SINE B2 0 216 1 6 1059 308 320 10 0 chr9 62255494 62255597 -61820575 - PB1D10 SINE Alu 0 117 14 6 1059 329 216 65 47 chr9 62255674 62255781 -61820391 - LTR85a LTR Gypsy? -587 115 7 6 1059 336 222 26 37 chr9 62256029 62256121 -61820051 - B1F SINE Alu 0 120 22 6 1059 3173 34 3 10 chr9 62256121 62256512 -61819660 + RLTR1B LTR ERV1 1 388 -124 6 1059 2499 7 0 0 chr9 62256511 62256794 -61819378 - MT2_Mm LTR ERVL -210 283 1 6 1059 237 252 33 83 chr9 62256794 62256823 -61819349 - ORR1A3-int LTR MaLR -1350 613 591 7 1059 399 167 46 35 chr9 62256832 62256919 -61819253 - ORR1A3-int LTR MaLR -1323 640 553 7 1059 1149 46 7 0 chr9 62256919 62257072 -61819100 - MERVL-int LTR ERVL -125 5360 5207 7 1059 5612 21 1 0 chr9 62257242 62257906 -61818266 - MERVL-int LTR ERVL -4820 665 1 7 1059 1469 27 71 0 chr9 62257906 62258089 -61818083 - MT2_Mm LTR ERVL 0 493 298 7 1059 969 65 0 0 chr9 62258099 62258222 -61817950 + RLTR1B LTR ERV1 388 510 -2 7 1059 239 69 50 33 chr9 62258239 62258299 -61817873 + T-rich Low_complexity Low_complexity 1 61 0 7 1059 683 252 20 13 chr9 62258302 62258451 -61817721 - ID_B1 SINE B4 -6 218 69 7 1059 2218 107 6 58 chr9 62258543 62258890 -61817282 + ORR1A4 LTR MaLR 1 329 0 7 1060 677 242 12 25 chr9 62259772 62259944 -61816228 - ID_B1 SINE B4 -58 234 69 7 1060 2178 136 34 28 chr9 62260036 62260393 -61815779 - ORR1B2 LTR MaLR -8 359 1 7 1060 442 229 45 53 chr9 62260550 62260683 -61815489 - ID_B1 SINE B4 -152 140 12 7 1060 295 252 42 93 chr9 62260811 62260929 -61815243 + PB1D10 SINE Alu 6 117 0 7 1060 792 230 46 0 chr9 62261183 62261357 -61814815 + B3 SINE B2 35 216 0 7 1060 436 230 8 96 chr9 62261380 62261505 -61814667 + PB1D10 SINE Alu 3 116 -1 7 1060 398 283 0 45 chr9 62261507 62261618 -61814554 + ID_B1 SINE B4 113 218 -6 7 1060 303 245 247 71 chr9 62261654 62261698 -61814474 - B3A SINE B2 -15 183 148 7 1060 564 56 0 0 chr9 62261698 62261770 -61814402 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1060 303 245 247 71 chr9 62261770 62261879 -61814293 - B3A SINE B2 -51 147 3 7 1060 572 294 50 15 chr9 62262342 62262542 -61813630 + ID_B1 SINE B4 2 208 -16 7 1060 219 69 0 0 chr9 62262875 62262904 -61813268 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 7 1060 187 236 36 0 chr9 62263286 62263341 -61812831 - MIR SINE MIR -108 100 44 7 1060 798 31 0 0 chr9 62263481 62263578 -61812594 + (TCCC)n Simple_repeat Simple_repeat 3 99 0 7 1060 594 0 0 0 chr9 62263855 62263921 -61812251 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 1060 739 0 22 0 chr9 62264136 62264227 -61811945 + (CA)n Simple_repeat Simple_repeat 1 93 0 7 1060 230 0 33 0 chr9 62264993 62265023 -61811149 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1060 871 227 93 0 chr9 62265023 62265217 -61810955 - ID_B1 SINE B4 -9 215 4 7 1060 233 296 156 23 chr9 62265680 62265853 -61810319 - MIR3 SINE MIR -9 199 4 7 1060 1068 238 5 5 chr9 62266236 62266439 -61809733 - ID_B1 SINE B4 -13 211 9 7 1060 459 252 19 37 chr9 62266455 62266562 -61809610 - PB1D7 SINE Alu -6 114 10 7 1060 21 0 0 0 chr9 62266606 62266627 -61809545 + AT_rich Low_complexity Low_complexity 1 21 0 7 1060 874 179 7 0 chr9 62266634 62266785 -61809387 + B3 SINE B2 6 157 -59 7 1060 21 0 0 0 chr9 62266803 62266824 -61809348 + AT_rich Low_complexity Low_complexity 1 21 0 7 1060 329 215 46 92 chr9 62266824 62266911 -61809261 - RSINE1 SINE B4 0 165 83 7 1060 411 310 50 25 chr9 62266969 62267128 -61809044 + MER20 DNA MER1_type 40 202 -17 7 1060 306 297 277 35 chr9 62268254 62268456 -61807716 + MIRc SINE MIR 14 264 -4 7 1060 337 169 0 105 chr9 62269509 62269595 -61806577 - PB1D10 SINE Alu -1 116 40 7 1060 328 274 11 45 chr9 62269625 62269713 -61806459 - ID_B1 SINE B4 -21 203 119 7 1060 696 258 75 0 chr9 62269728 62269887 -61806285 - ID_B1 SINE B4 -2 222 52 7 1060 316 290 79 10 chr9 62269991 62270092 -61806080 + Tigger13a DNA MER2_type 21 128 -643 7 1060 764 197 145 35 chr9 62270079 62270279 -61805893 + MTD LTR MaLR 198 419 0 7 1060 845 231 97 0 chr9 62270521 62270716 -61805456 + ID_B1 SINE B4 1 214 -10 7 1060 549 209 17 0 chr9 62270739 62270854 -61805318 - B1F SINE Alu -32 117 1 7 1060 957 67 20 13 chr9 62271466 62271617 -61804555 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 7 1060 1242 34 0 0 chr9 62271628 62271775 -61804397 - B1_Mus2 SINE Alu 0 147 1 7 1060 575 273 8 8 chr9 62271843 62271972 -61804200 - ID_B1 SINE B4 -94 130 2 7 1060 705 306 180 37 chr9 62272122 62272489 -61803683 + MLT1F2 LTR MaLR 72 495 -65 7 1060 977 226 159 47 chr9 62272489 62272810 -61803362 + ORR1E LTR MaLR 1 357 -2 7 1060 705 306 180 37 chr9 62272810 62272870 -61803302 + MLT1F2 LTR MaLR 496 560 0 7 1060 246 105 0 0 chr9 62273901 62273939 -61802233 + (CCCG)n Simple_repeat Simple_repeat 4 41 0 7 1060 228 132 0 95 chr9 62274620 62274662 -61801510 - ID_B1 SINE B4 -13 211 174 7 1060 214 125 0 0 chr9 62274636 62274668 -61801504 - B1F SINE Alu -57 92 61 7 1060 181 312 27 135 chr9 62274880 62275028 -61801144 + MIRm SINE MIR 7 138 -138 7 1060 191 114 29 0 chr9 62275223 62275258 -61800914 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1060 299 286 0 45 chr9 62275258 62275346 -61800826 - PB1D10 SINE Alu -6 111 28 7 1060 332 253 27 49 chr9 62275978 62276161 -61800011 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1060 325 212 39 56 chr9 62276077 62276257 -61799915 + (TATG)n Simple_repeat Simple_repeat 1 177 0 7 1060 209 198 67 29 chr9 62276290 62276394 -61799778 + (TATG)n Simple_repeat Simple_repeat 4 111 0 7 1060 491 326 108 34 chr9 62277215 62277510 -61798662 + MLT1D LTR MaLR 12 328 -177 7 1060 355 242 0 99 chr9 62277511 62277612 -61798560 + PB1D10 SINE Alu 27 117 0 7 1060 315 277 24 24 chr9 62277615 62277700 -61798472 + B4 SINE B4 2 86 -206 7 1060 413 288 63 0 chr9 62277714 62277825 -61798347 + RSINE1 SINE B4 16 133 -32 7 1060 415 232 226 6 chr9 62277879 62278047 -61798125 + B4A SINE B4 82 286 -6 7 1060 273 296 140 53 chr9 62278084 62278255 -61797917 + MLT1D LTR MaLR 320 505 0 7 1060 509 254 17 0 chr9 62278442 62278560 -61797612 - ID_B1 SINE B4 -83 141 22 7 1060 632 226 345 0 chr9 62279426 62279693 -61796479 + MTE2b LTR MaLR 21 379 0 7 1060 267 265 92 0 chr9 62280458 62280556 -61795616 - PB1D10 SINE Alu 0 117 11 7 1060 756 219 18 41 chr9 62280480 62280651 -61795521 - ID_B1 SINE B4 -54 170 4 7 1060 324 0 0 0 chr9 62281303 62281339 -61794833 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1060 626 234 80 25 chr9 62281345 62281507 -61794665 - B3A SINE B2 -27 171 1 7 1060 1092 194 61 103 chr9 62281532 62281690 -61794482 + ORR1D2 LTR MaLR 3 147 -223 7 1060 627 14 0 0 chr9 62281690 62281762 -61794410 + (TC)n Simple_repeat Simple_repeat 1 72 0 7 1060 1025 133 0 0 chr9 62281770 62281913 -61794259 - B1_Mus1 SINE Alu -5 143 1 7 1060 1092 194 61 103 chr9 62281913 62282124 -61794048 + ORR1D2 LTR MaLR 156 364 -6 7 1060 540 0 0 0 chr9 62282724 62282784 -61793388 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1060 320 274 25 8 chr9 62282890 62283008 -61793164 + (TA)n Simple_repeat Simple_repeat 2 121 0 7 1060 468 51 0 0 chr9 62283010 62283069 -61793103 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1060 248 324 14 0 chr9 62283085 62283159 -61793013 + MIRc SINE MIR 75 149 -119 7 1060 243 0 0 0 chr9 62283583 62283610 -61792562 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1060 196 385 69 8 chr9 62284147 62284278 -61791894 + MIRb SINE MIR 62 200 -68 7 1060 2558 150 32 15 chr9 62284335 62284747 -61791425 + MTC LTR MaLR 3 421 0 7 1060 274 225 0 36 chr9 62284871 62284954 -61791218 + Lx6 LINE L1 7362 7441 -19 7 1060 693 270 99 22 chr9 62284977 62285159 -61791013 - B3A SINE B2 -2 196 1 7 1060 230 343 80 22 chr9 62285162 62285299 -61790873 - ID_B1 SINE B4 0 224 80 7 1060 204 200 0 0 chr9 62285659 62285694 -61790478 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1060 320 302 0 11 chr9 62285696 62285783 -61790389 - B4A SINE B4 -206 86 1 7 1060 495 0 0 0 chr9 62285796 62285851 -61790321 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 7 1060 619 281 2 22 chr9 62285852 62286064 -61790108 - ID_B1 SINE B4 -19 205 6 7 1060 200 238 16 0 chr9 62286247 62286310 -61789862 + CT-rich Low_complexity Low_complexity 1 64 0 7 1060 361 227 53 0 chr9 62286310 62286385 -61789787 - ID4_ SINE ID 0 83 5 7 1060 1429 129 39 24 chr9 62286980 62287284 -61788888 + RLTR4_Mm LTR ERV1 1 274 -468 7 1060 2066 42 20 24 chr9 62287261 62287554 -61788618 + RLTR4_Mm LTR ERV1 451 742 0 7 1060 61319 50 4 0 chr9 62287554 62295126 -61781046 + RLTR4_MM-int LTR ERV1 1 7601 0 7 1060 1429 75 33 0 chr9 62295126 62295340 -61780832 + RLTR4_Mm LTR ERV1 1 221 -521 7 1060 450 179 62 39 chr9 62295341 62295469 -61780703 + RLTR4_Mm LTR ERV1 144 274 -468 7 1060 2066 42 20 24 chr9 62295446 62295739 -61780433 + RLTR4_Mm LTR ERV1 451 742 0 7 1060 8576 134 10 120 chr9 62295840 62296127 -61780045 - RLTR21 LTR ERVK 0 1572 1287 7 1060 429 20 0 0 chr9 62296127 62296177 -61779995 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1060 8576 134 10 120 chr9 62296177 62296202 -61779970 - RLTR21 LTR ERVK -286 1286 1275 7 1060 1224 42 0 0 chr9 62296202 62296344 -61779828 + B1_Mus1 SINE Alu 1 142 -6 7 1060 270 0 0 0 chr9 62296345 62296375 -61779797 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 7 1060 8576 134 10 120 chr9 62296375 62296659 -61779513 - RLTR21 LTR ERVK -298 1274 1058 7 1060 890 102 23 0 chr9 62296659 62296835 -61779337 + (CACAC)n Simple_repeat Simple_repeat 1 180 0 7 1060 8576 134 10 120 chr9 62296835 62296896 -61779276 - RLTR21 LTR ERVK -515 1057 1057 7 1060 2861 57 2 88 chr9 62296896 62297318 -61778854 + RLTR10 LTR ERVK 1 386 -4 7 1060 8576 134 10 120 chr9 62297318 62298422 -61777750 - RLTR21 LTR ERVK -515 1057 1 7 1060 229 366 92 10 chr9 62300030 62300226 -61775946 - MIR SINE MIR -21 241 30 7 1060 460 0 33 0 chr9 62301106 62301166 -61775006 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 7 1060 258 243 14 0 chr9 62301168 62301242 -61774930 + (TCCA)n Simple_repeat Simple_repeat 4 78 0 7 1060 252 0 0 0 chr9 62301306 62301334 -61774838 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1060 234 306 69 23 chr9 62301342 62301429 -61774743 - L2b LINE L2 -44 3331 3241 7 1060 338 244 0 23 chr9 62301680 62301768 -61774404 - B4 SINE B4 -206 86 1 7 1060 216 276 0 17 chr9 62301988 62302047 -61774125 + CT-rich Low_complexity Low_complexity 1 58 0 7 1060 760 300 51 29 chr9 62303000 62303275 -61772897 - B4 SINE B4 -1 291 11 7 1060 664 241 91 0 chr9 62303284 62303471 -61772701 - B3 SINE B2 -5 211 8 7 1060 315 300 22 0 chr9 62303486 62303576 -61772596 - PB1D7 SINE Alu -28 92 1 7 1060 504 310 6 31 chr9 62303576 62303659 -61772513 - ID SINE ID -144 80 2 7 1060 1333 89 0 22 chr9 62304214 62304238 -61771934 - B2_Mm2 SINE B2 -15 180 159 8 1060 387 0 0 0 chr9 62304238 62304281 -61771891 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 8 1060 1333 89 0 22 chr9 62304281 62304440 -61771732 - B2_Mm2 SINE B2 -37 158 1 8 1060 310 343 125 28 chr9 62304508 62304652 -61771520 - RSINE1 SINE B4 0 165 8 8 1060 702 264 77 5 chr9 62304664 62304873 -61771299 - ID_B1 SINE B4 0 224 1 8 1060 741 274 5 9 chr9 62304915 62305125 -61771047 - MER63D DNA AcHobo -851 210 2 8 1060 214 143 41 0 chr9 62305204 62305253 -61770919 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 1060 248 262 48 36 chr9 62305253 62305336 -61770836 + PB1D9 SINE Alu 35 118 -2 8 1060 777 306 92 8 chr9 62305547 62305807 -61770365 + B4A SINE B4 1 282 -10 8 1060 885 116 0 0 chr9 62305818 62305964 -61770208 + (CA)n Simple_repeat Simple_repeat 1 146 0 8 1060 936 149 69 6 chr9 62306613 62306788 -61769384 + B2_Mm2 SINE B2 2 187 -8 8 1060 887 232 6 0 chr9 62306830 62306994 -61769178 - RSINE1 SINE B4 0 165 1 8 1060 571 253 129 21 chr9 62306996 62307190 -61768982 - ID_B1 SINE B4 -2 222 8 8 1060 2265 159 58 39 chr9 62307514 62307534 -61768638 + MTC LTR MaLR 1 17 -404 8 1060 198 0 0 0 chr9 62307534 62307556 -61768616 + (TTG)n Simple_repeat Simple_repeat 2 23 0 8 1060 2265 159 58 39 chr9 62307556 62307948 -61768224 + MTC LTR MaLR 18 421 0 8 1060 531 245 45 65 chr9 62307988 62308189 -61767983 - B3A SINE B2 0 198 2 8 1060 21 0 0 0 chr9 62308194 62308215 -61767957 + AT_rich Low_complexity Low_complexity 1 21 0 8 1060 276 203 188 0 chr9 62308366 62308430 -61767742 - ID SINE ID -144 80 5 8 1060 958 185 79 35 chr9 62308509 62308711 -61767461 + B3 SINE B2 2 212 -4 8 1060 659 175 0 0 chr9 62309155 62309269 -61766903 + ID_B1 SINE B4 104 217 -7 8 1060 232 326 12 0 chr9 62309471 62309557 -61766615 + (TG)n Simple_repeat Simple_repeat 2 88 0 8 1060 228 67 0 0 chr9 62310152 62310182 -61765990 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 8 1060 709 258 0 41 chr9 62310182 62310352 -61765820 - RSINE1 SINE B4 -1 164 2 8 1060 418 280 66 59 chr9 62310392 62310544 -61765628 - RSINE1 SINE B4 -11 154 2 8 1060 227 353 57 6 chr9 62310631 62310788 -61765384 + MER5B DNA MER1_type 13 177 -1 8 1060 1630 145 39 118 chr9 62311166 62311548 -61764624 + ORR1B1 LTR MaLR 35 386 -8 8 1060 214 255 19 105 chr9 62312698 62312803 -61763369 - MIRm SINE MIR -123 153 58 8 1060 1203 54 0 20 chr9 62313029 62313179 -61762993 + B1_Mus2 SINE Alu 1 147 0 8 1060 1434 61 22 0 chr9 62313196 62313376 -61762796 + B2_Mm2 SINE B2 2 185 -10 8 1060 675 166 159 0 chr9 62313625 62313788 -61762384 + MTD LTR MaLR 30 218 -201 8 1060 408 145 169 0 chr9 62314317 62314400 -61761772 + MTD LTR MaLR 74 170 -249 8 1060 441 54 0 0 chr9 62314403 62314459 -61761713 + (TATG)n Simple_repeat Simple_repeat 3 58 0 8 1060 201 256 0 0 chr9 62314462 62314505 -61761667 + (CATA)n Simple_repeat Simple_repeat 2 44 0 8 1060 499 235 10 0 chr9 62314544 62314646 -61761526 - RSINE1 SINE B4 -29 136 34 8 1060 364 242 159 30 chr9 62314855 62314987 -61761185 - ID_B1 SINE B4 -70 154 6 8 1060 414 0 0 0 chr9 62315728 62315774 -61760398 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1060 333 0 0 0 chr9 62315774 62315810 -61760362 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1060 243 358 145 4 chr9 62315930 62316100 -61760072 + L2a LINE L2 3143 3344 -82 8 1060 533 42 0 14 chr9 62316100 62316173 -61759999 + (TTTC)n Simple_repeat Simple_repeat 4 75 0 8 1060 243 358 145 4 chr9 62316173 62316229 -61759943 + L2a LINE L2 3345 3400 -26 8 1060 378 0 0 0 chr9 62316310 62316352 -61759820 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 1060 398 223 90 72 chr9 62316356 62316467 -61759705 - B3A SINE B2 -10 188 76 8 1060 531 305 96 10 chr9 62316623 62316822 -61759350 - MIRc SINE MIR -34 234 19 8 1060 1187 216 110 50 chr9 62317400 62317737 -61758435 - ORR1D2 LTR MaLR -13 357 1 8 1060 611 228 125 8 chr9 62317812 62317977 -61758195 - B3A SINE B2 -2 193 6 8 1060 468 335 30 6 chr9 62318031 62318199 -61757973 - B4A SINE B4 -120 172 1 8 1060 240 208 19 0 chr9 62318199 62318251 -61757921 - MT2B LTR ERVL -355 246 194 8 1060 326 178 39 64 chr9 62318205 62318283 -61757889 - B1F2 SINE Alu -64 85 10 8 1060 514 256 17 0 chr9 62318475 62318592 -61757580 - RSINE1 SINE B4 -44 121 3 8 1060 750 249 28 32 chr9 62319043 62319259 -61756913 + ID_B1 SINE B4 10 224 0 8 1060 326 279 5 44 chr9 62319881 62319994 -61756178 + MIRb SINE MIR 47 157 -51 8 1060 537 248 26 0 chr9 62320126 62320243 -61755929 + PB1D9 SINE Alu 1 120 0 8 1060 725 250 35 11 chr9 62320251 62320425 -61755747 + B4A SINE B4 2 179 -113 8 1060 330 242 32 32 chr9 62321308 62321402 -61754770 + B4A SINE B4 7 100 -192 8 1060 396 88 0 0 chr9 62321684 62321741 -61754431 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1060 988 133 0 7 chr9 62321747 62321891 -61754281 - B1_Mus1 SINE Alu -4 144 2 8 1060 336 265 0 24 chr9 62321899 62321984 -61754188 - RMER30 DNA MER1_type -110 92 10 8 1060 360 0 0 0 chr9 62322084 62322124 -61754048 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1060 387 0 0 0 chr9 62322693 62322736 -61753436 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1060 30 27 0 0 chr9 62322746 62322783 -61753389 + AT_rich Low_complexity Low_complexity 1 37 0 8 1060 249 280 130 0 chr9 62322820 62322920 -61753252 + L1ME2z LINE L1 6325 6437 -7 8 1060 359 297 184 26 chr9 62322996 62323186 -61752986 + L1M5 LINE L1 4113 4332 -1811 8 1060 975 209 78 52 chr9 62323281 62323549 -61752623 + B4A SINE B4 1 275 -17 8 1060 1187 69 0 0 chr9 62323976 62324121 -61752051 + B1_Mus1 SINE Alu 3 147 -1 8 1060 769 204 45 19 chr9 62324249 62324404 -61751768 - RSINE1 SINE B4 -4 161 3 8 1060 279 0 0 0 chr9 62324412 62324443 -61751729 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1060 597 76 0 0 chr9 62324485 62324577 -61751595 + (TC)n Simple_repeat Simple_repeat 2 93 0 8 1060 387 0 0 0 chr9 62324577 62324619 -61751553 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1060 425 266 0 58 chr9 62324785 62324905 -61751267 + RSINE1 SINE B4 11 123 -42 8 1060 279 293 179 0 chr9 62325342 62325482 -61750690 - MIR3 SINE MIR -13 195 31 8 1060 540 0 0 0 chr9 62325836 62325896 -61750276 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 1060 297 236 13 65 chr9 62325915 62325992 -61750180 - ID4_ SINE ID -10 73 1 8 1060 1468 68 11 0 chr9 62325999 62326190 -61749982 - B2_Mm1t SINE B2 0 193 1 8 1060 575 263 123 76 chr9 62326505 62326781 -61749391 + B4A SINE B4 1 289 -3 8 1060 205 250 16 16 chr9 62326794 62326855 -61749317 + MIR SINE MIR 72 132 -76 8 1060 221 346 161 0 chr9 62328226 62328356 -61747816 - MIRb SINE MIR -8 260 110 8 1060 279 54 0 0 chr9 62328839 62328876 -61747296 + (TC)n Simple_repeat Simple_repeat 1 37 0 8 1060 257 319 40 65 chr9 62329405 62329473 -61746699 + L2a LINE L2 3302 3370 -56 8 1060 628 175 164 16 chr9 62329473 62329601 -61746571 - B1_Mur1 SINE Alu 0 149 3 8 1060 257 319 40 65 chr9 62329601 62329656 -61746516 + L2a LINE L2 3371 3422 -4 8 1060 543 268 0 0 chr9 62329700 62329879 -61746293 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 8 1060 294 364 71 0 chr9 62330105 62330245 -61745927 - MIR3 SINE MIR -15 193 44 8 1060 240 325 32 49 chr9 62330364 62330487 -61745685 + B1F SINE Alu 1 121 -28 8 1060 743 117 50 0 chr9 62331209 62331329 -61744843 - B1_Mus2 SINE Alu -11 136 11 8 1060 232 283 130 17 chr9 62331652 62331767 -61744405 + MIRm SINE MIR 29 159 -117 8 1060 189 324 14 14 chr9 62332337 62332409 -61743763 + MIRc SINE MIR 83 154 -114 8 1060 357 233 52 0 chr9 62332424 62332557 -61743615 - ID_B1 SINE B4 -33 191 2 8 1060 917 99 7 34 chr9 62332711 62332857 -61743315 - B1_Mur4 SINE Alu 0 150 9 8 1060 383 271 66 73 chr9 62332723 62332874 -61743298 - B4A SINE B4 -72 220 71 8 1060 241 290 78 78 chr9 62333014 62333029 -61743143 + B2_Mm2 SINE B2 35 73 -122 8 1060 330 337 11 0 chr9 62333029 62333121 -61743051 + RSINE1 SINE B4 56 148 -17 8 1060 241 290 78 78 chr9 62333121 62333156 -61743016 + B2_Mm2 SINE B2 74 176 -19 8 1060 937 301 48 91 chr9 62333158 62333390 -61742782 + Charlie1b DNA MER1_type 42 281 -242 8 1060 301 247 78 0 chr9 62333390 62333467 -61742705 - ID4 SINE ID 0 83 1 8 1060 937 301 48 91 chr9 62333467 62333603 -61742569 + Charlie1b DNA MER1_type 282 396 -127 8 1060 907 218 37 46 chr9 62333603 62333819 -61742353 - ID_B1 SINE B4 -9 215 2 8 1060 937 301 48 91 chr9 62333819 62333931 -61742241 + Charlie1b DNA MER1_type 397 502 -21 8 1060 438 53 0 0 chr9 62334098 62334155 -61742017 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1060 541 183 114 0 chr9 62334219 62334350 -61741822 + ORR1C2 LTR MaLR 1 146 -238 8 1060 276 30 0 0 chr9 62334350 62334383 -61741789 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1060 492 99 0 0 chr9 62334470 62334541 -61741631 + (TGG)n Simple_repeat Simple_repeat 1 71 0 8 1060 685 181 16 16 chr9 62334568 62334697 -61741475 + B1_Mur1 SINE Alu 11 139 -10 8 1060 398 207 46 0 chr9 62334726 62334813 -61741359 - B1F1 SINE Alu -51 98 8 8 1060 252 318 0 0 chr9 62334759 62334825 -61741347 - B4A SINE B4 -146 146 81 8 1060 304 260 36 71 chr9 62334833 62334945 -61741227 - PB1D10 SINE Alu -1 116 9 8 1060 636 270 12 30 chr9 62335456 62335620 -61740552 + RSINE1 SINE B4 5 165 0 8 1060 802 111 14 45 chr9 62335628 62335981 -61740191 + (CA)n Simple_repeat Simple_repeat 1 341 0 9 1060 216 197 32 32 chr9 62335981 62336044 -61740128 + (CATA)n Simple_repeat Simple_repeat 3 65 0 9 1060 501 158 28 14 chr9 62336055 62336196 -61739976 + (CA)n Simple_repeat Simple_repeat 1 143 0 9 1060 504 0 0 0 chr9 62336196 62336252 -61739920 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1060 204 191 0 0 chr9 62337807 62337849 -61738323 - MIR SINE MIR -142 120 79 9 1060 785 116 0 16 chr9 62338409 62338532 -61737640 - B1_Mur2 SINE Alu 0 149 29 9 1060 295 226 92 28 chr9 62338532 62338641 -61737531 + MER113A DNA MER1_type 67 182 -132 9 1060 234 150 0 0 chr9 62338656 62338696 -61737476 + (GGA)n Simple_repeat Simple_repeat 3 42 0 9 1060 268 295 36 32 chr9 62339272 62339442 -61736730 + MIR SINE MIR 19 180 -88 9 1060 220 286 0 31 chr9 62339585 62339650 -61736522 + CT-rich Low_complexity Low_complexity 6 68 0 9 1060 845 259 9 7 chr9 62339740 62339943 -61736229 - ID_B1 SINE B4 -64 228 15 9 1060 217 254 48 0 chr9 62339954 62340017 -61736155 - PB1D9 SINE Alu -1 119 54 9 1060 822 11 0 0 chr9 62340698 62340793 -61735379 + (TG)n Simple_repeat Simple_repeat 1 95 0 9 1060 351 0 0 0 chr9 62340793 62340831 -61735341 + (GA)n Simple_repeat Simple_repeat 1 39 0 9 1060 709 137 25 18 chr9 62341568 62341850 -61734322 + (TG)n Simple_repeat Simple_repeat 1 284 0 9 1060 737 268 55 29 chr9 62341851 62342089 -61734083 - B4A SINE B4 -1 291 48 9 1060 428 307 57 93 chr9 62342095 62342375 -61733797 + MTD LTR MaLR 149 418 -1 9 1060 928 123 0 55 chr9 62342792 62342956 -61733216 - URR1B DNA MER1_type 0 225 71 9 1060 191 271 148 9 chr9 62344054 62344162 -61732010 + MIRb SINE MIR 30 152 -116 9 1060 1009 256 48 45 chr9 62344168 62344458 -61731714 + B4 SINE B4 1 291 -1 9 1060 451 257 0 22 chr9 62344479 62344662 -61731510 + (CATA)n Simple_repeat Simple_repeat 1 179 0 9 1060 327 316 0 0 chr9 62344638 62344812 -61731360 + (CA)n Simple_repeat Simple_repeat 2 175 0 9 1060 192 306 0 0 chr9 62344826 62344947 -61731225 + (CA)n Simple_repeat Simple_repeat 2 122 0 9 1060 327 275 0 0 chr9 62344989 62345109 -61731063 + (CA)n Simple_repeat Simple_repeat 1 120 0 9 1060 408 286 8 138 chr9 62345122 62345369 -61730803 + MLT1L LTR MaLR 232 446 -164 9 1060 349 260 9 74 chr9 62345566 62345674 -61730498 + ORR1D1 LTR MaLR 274 374 0 9 1060 286 288 38 0 chr9 62345887 62345967 -61730205 - MER91A DNA Tip100 -108 88 6 9 1060 295 250 29 0 chr9 62346616 62346684 -61729488 + RSINE1 SINE B4 3 72 -93 9 1060 183 42 0 0 chr9 62346692 62346716 -61729456 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1060 274 371 48 62 chr9 62346933 62347269 -61728903 + L1ME1 LINE L1 5848 6178 -1 9 1060 1166 248 88 66 chr9 62347359 62347722 -61728450 - MTEa LTR MaLR -8 371 1 9 1060 270 321 12 0 chr9 62348223 62348307 -61727865 + PB1D10 SINE Alu 9 93 -24 9 1060 236 139 23 0 chr9 62348396 62348439 -61727733 + B4A SINE B4 58 101 -191 9 1060 229 280 0 0 chr9 62348488 62348538 -61727634 + RMER1C Other Other 41 90 -1252 9 1060 190 395 0 24 chr9 62348615 62348698 -61727474 + L3 LINE CR1 4292 4372 -117 9 1060 334 296 85 57 chr9 62348717 62348928 -61727244 + ID_B1 SINE B4 4 220 -4 9 1060 1413 70 21 0 chr9 62348937 62349123 -61727049 + B2_Mm2 SINE B2 1 190 -5 9 1060 269 315 28 7 chr9 62349153 62349297 -61726875 + (CATATA)n Simple_repeat Simple_repeat 6 152 0 9 1060 347 119 15 0 chr9 62349970 62350037 -61726135 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1060 916 240 108 19 chr9 62350054 62350322 -61725850 - B4 SINE B4 0 292 1 9 1060 573 15 0 0 chr9 62350736 62350802 -61725370 + (TGG)n Simple_repeat Simple_repeat 2 67 0 9 1060 840 185 0 0 chr9 62350803 62350938 -61725234 - B1_Mus2 SINE Alu -12 135 1 9 1060 209 233 0 0 chr9 62351113 62351156 -61725016 - L4 LINE RTE -207 1822 1780 9 1060 960 132 88 187 chr9 62351222 62351312 -61724860 + URR1A DNA MER1_type 1 109 -117 9 1060 1199 56 7 0 chr9 62351312 62351455 -61724717 + B1_Mus2 SINE Alu 2 145 -2 9 1060 960 132 88 187 chr9 62351455 62351615 -61724557 + URR1A DNA MER1_type 110 226 0 9 1060 33 56 0 0 chr9 62352326 62352380 -61723792 + AT_rich Low_complexity Low_complexity 1 54 0 9 1060 435 38 0 0 chr9 62352381 62352434 -61723738 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1060 377 250 11 0 chr9 62352473 62352561 -61723611 - RSINE1 SINE B4 -74 91 3 9 1060 196 194 0 0 chr9 62352916 62352952 -61723220 + L2a LINE L2 3376 3411 -15 9 1060 1237 68 0 0 chr9 62352955 62353103 -61723069 + B1_Mus1 SINE Alu 1 148 0 9 1060 216 97 0 0 chr9 62353103 62353134 -61723038 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1060 288 91 0 0 chr9 62354869 62354913 -61721259 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1060 324 374 0 44 chr9 62355402 62355539 -61720633 - MLT1A0 LTR MaLR -69 305 175 9 1060 628 258 91 76 chr9 62355567 62355764 -61720408 - ID_B1 SINE B4 -7 217 18 9 1060 395 255 26 43 chr9 62355759 62355874 -61720298 - MLT1A0 LTR MaLR -230 135 23 9 1060 453 304 22 7 chr9 62355875 62356014 -61720158 + B1F SINE Alu 4 144 -5 9 1060 276 296 23 0 chr9 62357455 62357543 -61718629 - MER5A DNA MER1_type -50 139 50 9 1060 484 376 94 11 chr9 62357648 62358022 -61718150 - Charlie20a DNA Charlie -316 491 87 9 1060 1020 231 5 9 chr9 62358025 62358243 -61717929 + ID_B1 SINE B4 7 223 -1 9 1060 277 232 0 28 chr9 62358532 62358603 -61717569 + MLT1J LTR MaLR 100 168 -344 9 1060 220 336 94 0 chr9 62359082 62359231 -61716941 - MIR3 SINE MIR -22 186 24 9 1060 261 167 0 0 chr9 62360081 62360135 -61716037 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1060 510 219 15 208 chr9 62360147 62360261 -61715911 - B4A SINE B4 -3 289 127 9 1060 552 148 0 0 chr9 62360261 62360349 -61715823 - B1_Mur1 SINE Alu -20 129 42 9 1060 365 0 0 162 chr9 62360352 62360549 -61715623 + (CTCTG)n Simple_repeat Simple_repeat 1 165 0 9 1060 270 208 0 0 chr9 62360555 62360608 -61715564 - B1F2 SINE Alu -92 57 5 9 1060 513 261 69 44 chr9 62360842 62361002 -61715170 - RSINE1 SINE B4 0 165 2 9 1060 387 208 228 0 chr9 62361068 62361169 -61715003 - B4 SINE B4 0 292 169 9 1060 324 0 0 0 chr9 62361182 62361218 -61714954 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1060 214 274 14 14 chr9 62361218 62361292 -61714880 - B4 SINE B4 -215 77 4 9 1060 828 301 19 9 chr9 62361294 62361574 -61714598 - L1ME4a LINE L1 -296 5828 5546 9 1060 332 308 72 62 chr9 62362300 62362508 -61713664 - MIRb SINE MIR -32 236 27 9 1060 364 338 55 7 chr9 62362615 62362789 -61713383 - MLT1B LTR MaLR -3 371 189 9 1060 440 218 0 0 chr9 62362835 62362922 -61713250 + 5S rRNA rRNA 1 87 -34 9 1060 964 266 51 14 chr9 62363141 62363416 -61712756 + B4 SINE B4 4 288 -4 9 1060 1191 70 0 0 chr9 62363475 62363618 -61712554 - B1_Mus1 SINE Alu -5 143 1 9 1060 216 0 0 0 chr9 62363749 62363773 -61712399 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 9 1060 435 252 84 0 chr9 62364289 62364396 -61711776 - PB1D10 SINE Alu -1 116 1 9 1060 252 194 210 0 chr9 62364486 62364548 -61711624 + PB1D10 SINE Alu 43 117 0 9 1060 387 0 0 0 chr9 62365500 62365543 -61710629 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1060 200 226 47 9 chr9 62366091 62366198 -61709974 + (CATG)n Simple_repeat Simple_repeat 4 114 0 9 1060 1334 146 56 0 chr9 62367011 62367224 -61708948 + URR1B DNA MER1_type 1 225 0 9 1060 314 339 31 73 chr9 62368300 62368491 -61707681 + MIRb SINE MIR 26 208 -60 9 1060 684 36 0 0 chr9 62368726 62368809 -61707363 + (GA)n Simple_repeat Simple_repeat 2 84 0 9 1060 313 355 46 7 chr9 62370505 62370658 -61705514 - MIRc SINE MIR -50 218 60 9 1060 207 0 0 0 chr9 62373198 62373221 -61702951 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 9 1060 647 288 13 68 chr9 62373652 62373887 -61702285 + ID_B1 SINE B4 1 222 -2 9 1060 877 269 48 5 chr9 62375116 62375325 -61700847 + ID_B1 SINE B4 3 220 -4 9 1060 321 89 0 0 chr9 62376060 62376105 -61700067 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1060 1091 228 33 4 chr9 62376105 62376347 -61699825 - B4A SINE B4 -38 254 6 9 1060 189 346 122 0 chr9 62376705 62376812 -61699360 - MIRc SINE MIR -133 135 16 9 1060 388 210 12 47 chr9 62377026 62377111 -61699061 - ID4 SINE ID -1 82 1 9 1060 446 259 165 34 chr9 62377131 62377307 -61698865 + B4A SINE B4 2 200 -92 9 1060 353 184 9 0 chr9 62377319 62377428 -61698744 + CT-rich Low_complexity Low_complexity 2 111 0 9 1060 423 0 0 0 chr9 62377428 62377475 -61698697 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1060 328 341 49 18 chr9 62378670 62378864 -61697308 - MIR SINE MIR -36 232 27 9 1060 225 0 0 0 chr9 62379108 62379133 -61697039 + (C)n Simple_repeat Simple_repeat 1 25 0 9 1060 1023 70 0 0 chr9 62379144 62379286 -61696886 + B1_Mm SINE Alu 6 147 0 9 1060 201 322 58 17 chr9 62379336 62379456 -61696716 + MIRb SINE MIR 22 146 -122 9 1060 432 0 0 0 chr9 62380534 62380582 -61695590 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1060 990 144 198 26 chr9 62381214 62381406 -61694766 - URR1B DNA MER1_type 0 225 1 9 1060 360 235 0 36 chr9 62382462 62382546 -61693626 - MIR SINE MIR -91 117 37 9 1060 421 261 103 33 chr9 62382901 62383027 -61693145 + MIRb SINE MIR 10 150 -118 9 1060 30 0 0 0 chr9 62384631 62384661 -61691511 + GC_rich Low_complexity Low_complexity 1 30 0 9 1060 324 0 0 0 chr9 62385441 62385477 -61690695 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1060 290 268 0 99 chr9 62386195 62386286 -61689886 + B4A SINE B4 205 286 -6 1 1060 339 44 0 0 chr9 62386287 62386332 -61689840 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1060 924 259 62 52 chr9 62386420 62386709 -61689463 + B4A SINE B4 1 292 0 1 1060 232 319 0 42 chr9 62386725 62386797 -61689375 + ID4_ SINE ID 9 77 -6 1 1060 419 100 14 0 chr9 62388479 62388549 -61687623 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1060 324 0 0 0 chr9 62389116 62389152 -61687020 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1060 421 250 177 7 chr9 62389575 62389716 -61686456 - B3A SINE B2 -33 165 1 1 132 239 320 90 30 chr9 62390178 62390278 -61685894 + MIR SINE MIR 8 113 -149 1 1061 473 269 69 28 chr9 62390338 62390483 -61685689 + RSINE1 SINE B4 2 152 -13 1 1061 549 291 135 16 chr9 62391172 62391357 -61684815 - B4A SINE B4 -85 207 1 1 1061 305 235 12 36 chr9 62391726 62391810 -61684362 + MER5A DNA MER1_type 40 121 -68 1 1061 413 274 53 0 chr9 62392371 62392484 -61683688 + RSINE1 SINE B4 47 165 0 1 1061 515 280 131 6 chr9 62392517 62392700 -61683472 - FordPrefect DNA Tip100 -199 1484 1279 1 1061 227 273 0 132 chr9 62392745 62392821 -61683351 + MER34A LTR ERV1 4 69 -502 1 1061 441 215 112 0 chr9 62393377 62393484 -61682688 + PB1D7 SINE Alu 2 120 0 1 1061 369 0 0 0 chr9 62393512 62393553 -61682619 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1061 226 256 0 0 chr9 62393553 62393596 -61682576 - B4 SINE B4 -23 269 227 1 1061 849 103 12 29 chr9 62393596 62393746 -61682426 + (TCCC)n Simple_repeat Simple_repeat 1 149 0 1 1061 1263 94 0 0 chr9 62393746 62393926 -61682246 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1061 849 103 12 29 chr9 62393926 62393945 -61682227 + (TCCC)n Simple_repeat Simple_repeat 3 20 0 1 1061 408 336 7 7 chr9 62394239 62394377 -61681795 + MIR SINE MIR 33 170 -92 1 1061 716 296 41 23 chr9 62394415 62394636 -61681536 + B4 SINE B4 54 278 -14 1 1061 761 186 3 36 chr9 62394657 62394991 -61681181 + (CATA)n Simple_repeat Simple_repeat 1 323 0 1 1061 759 219 0 0 chr9 62395015 62395193 -61680979 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1061 723 176 28 7 chr9 62395826 62395969 -61680203 + B1_Mur2 SINE Alu 3 148 -1 1 1061 446 298 82 31 chr9 62396014 62396208 -61679964 + B4A SINE B4 2 205 -87 1 1061 624 314 73 56 chr9 62396229 62396802 -61679370 - L1MEe LINE L1 -2889 3257 2675 1 1061 417 271 94 82 chr9 62396809 62397066 -61679106 - MLT1A0 LTR MaLR -7 617 226 1 1061 22 0 0 0 chr9 62397133 62397155 -61679017 + AT_rich Low_complexity Low_complexity 1 22 0 1 1061 342 299 142 28 chr9 62397200 62397538 -61678634 - L1MEe LINE L1 -3509 2637 2267 1 1061 291 333 0 50 chr9 62397562 62397682 -61678490 - MER53 DNA hAT -3 190 77 1 1061 189 208 83 0 chr9 62399175 62399223 -61676949 + MIRc SINE MIR 36 87 -181 1 1061 210 114 22 22 chr9 62399326 62399371 -61676801 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 1 1061 198 0 0 0 chr9 62399936 62399958 -61676214 + (TTCTG)n Simple_repeat Simple_repeat 4 25 0 1 1061 905 130 20 0 chr9 62399984 62400130 -61676042 - B1_Mur3 SINE Alu 0 149 1 1 1061 198 0 0 0 chr9 62400183 62400205 -61675967 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 1 1061 1972 142 116 0 chr9 62400231 62400576 -61675596 - ORR1B1 LTR MaLR -8 386 2 1 1061 638 221 39 0 chr9 62400576 62400703 -61675469 - B1_Mur1 SINE Alu -15 134 3 1 1061 183 281 94 0 chr9 62401740 62401804 -61674368 + L2c LINE L2 3094 3163 -224 1 1061 302 330 0 0 chr9 62401837 62401928 -61674244 - MLT1D LTR MaLR -11 494 404 1 1061 248 326 99 37 chr9 62401989 62402180 -61673992 - MLT1D LTR MaLR -405 222 20 1 1061 185 266 92 131 chr9 62402276 62402406 -61673766 + L2c LINE L2 3261 3385 -2 1 1061 2096 93 20 88 chr9 62404171 62404453 -61671719 + ORR1A2 LTR MaLR 1 273 -54 1 1061 1127 59 0 0 chr9 62404453 62404589 -61671583 + B1_Mus1 SINE Alu 2 137 -11 1 1061 2096 93 20 88 chr9 62404589 62404648 -61671524 + ORR1A2 LTR MaLR 274 319 -8 1 1061 284 325 68 37 chr9 62406158 62406321 -61669851 + ERVL-E-int LTR ERVL 2767 2934 -2733 1 1061 540 0 0 0 chr9 62406726 62406786 -61669386 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1061 486 0 0 0 chr9 62406786 62406839 -61669333 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1061 459 276 149 42 chr9 62406927 62407188 -61668984 + B4 SINE B4 2 290 -2 1 1061 182 180 16 0 chr9 62407191 62407252 -61668920 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1061 334 308 22 65 chr9 62408304 62408501 -61667671 + ID_B1 SINE B4 9 224 0 1 1061 1324 151 19 0 chr9 62408426 62408629 -61667543 + MTC LTR MaLR 2 208 -213 1 1061 1314 103 9 8 chr9 62408629 62408824 -61667348 + B2_Mm2 SINE B2 1 206 -10 1 1061 561 105 42 13 chr9 62408815 62408949 -61667223 + MTC LTR MaLR 193 421 0 1 1061 1778 181 72 9 chr9 62409003 62409338 -61666834 + MTD LTR MaLR 12 367 -52 1 1061 230 217 87 0 chr9 62409339 62409384 -61666788 + ID_B1 SINE B4 162 210 -14 1 1061 1023 264 67 92 chr9 62409384 62409696 -61666476 + MTE2b LTR MaLR 1 302 -77 1 1061 207 0 0 0 chr9 62409696 62409719 -61666453 + (C)n Simple_repeat Simple_repeat 1 23 0 1 1061 1023 264 67 92 chr9 62409719 62409777 -61666395 + MTE2b LTR MaLR 303 362 -17 1 1061 621 227 83 0 chr9 62409782 62409914 -61666258 + RSINE1 SINE B4 1 143 -22 1 1061 327 288 0 0 chr9 62410005 62410085 -61666087 + MLT1I LTR MaLR 102 181 -230 1 1061 510 277 14 7 chr9 62410586 62410724 -61665448 + RSINE1 SINE B4 3 141 -24 1 1061 297 0 0 0 chr9 62410724 62410757 -61665415 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1061 875 122 0 86 chr9 62411075 62411227 -61664945 + B1_Mur4 SINE Alu 3 141 -9 1 1061 217 65 87 0 chr9 62411331 62411377 -61664795 + (CAGAGA)n Simple_repeat Simple_repeat 5 54 0 1 1061 463 206 54 11 chr9 62411392 62411485 -61664687 - ID_B1 SINE B4 -23 201 105 1 1061 1177 236 115 15 chr9 62411490 62411830 -61664342 + ORR1D1 LTR MaLR 1 374 0 1 1061 402 270 11 0 chr9 62411830 62411916 -61664256 - ID SINE ID -136 88 2 1 1061 1772 265 112 36 chr9 62411924 62412534 -61663638 + Charlie1a DNA MER1_type 380 1035 -420 1 1061 470 293 190 13 chr9 62412534 62412766 -61663406 + B4A SINE B4 2 274 -18 1 1061 859 154 42 7 chr9 62412859 62413003 -61663169 + B1_Mur4 SINE Alu 1 149 -1 1 1061 2934 134 125 90 chr9 62413036 62413626 -61662546 - RMER19C LTR ERVK 0 611 1 1 1061 659 316 22 9 chr9 62413717 62413947 -61662225 + Charlie1a DNA MER1_type 1030 1262 -193 1 1061 2523 98 11 19 chr9 62414007 62414373 -61661799 - RLTR8 LTR ERVK -2 363 1 1 1061 293 93 0 18 chr9 62415020 62415075 -61661097 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1061 192 137 59 0 chr9 62415261 62415312 -61660860 + (CTATA)n Simple_repeat Simple_repeat 1 54 0 1 1061 489 269 86 40 chr9 62415431 62415605 -61660567 - MER58A DNA MER1_type -2 222 41 1 1061 301 284 44 22 chr9 62415692 62415782 -61660390 - MLT2E LTR ERVL -505 123 32 1 1061 1846 123 56 174 chr9 62416143 62416575 -61659597 - ORR1C2 LTR MaLR -3 381 1 1 1061 353 235 37 0 chr9 62416818 62416899 -61659273 + ID_B1 SINE B4 85 168 -56 1 1061 346 237 144 0 chr9 62416899 62416912 -61659260 + PB1D10 SINE Alu 4 111 -6 1 1061 879 239 54 10 chr9 62417914 62418117 -61658055 + B3 SINE B2 2 213 -3 1 1061 26 30 0 0 chr9 62418248 62418281 -61657891 + AT_rich Low_complexity Low_complexity 1 33 0 1 1061 1233 41 0 20 chr9 62418604 62418754 -61657418 - B1_Mus1 SINE Alu 0 148 2 1 1061 1263 213 117 5 chr9 62418787 62419084 -61657088 + MTD LTR MaLR 1 344 -56 1 1061 776 140 19 57 chr9 62419085 62419244 -61656928 + ORR1D1 LTR MaLR 1 153 -221 1 1061 664 279 19 0 chr9 62419224 62419382 -61656790 - MTEb LTR MaLR -218 161 1 1 1061 501 312 109 44 chr9 62419968 62420139 -61656033 + L1MEc LINE L1 1557 1735 -4898 1 1061 2871 0 0 0 chr9 62420139 62420451 -61655721 + L1Md_T LINE L1 6271 6582 0 1 1061 501 312 109 44 chr9 62420451 62420500 -61655672 + L1MEc LINE L1 1736 1777 -4856 1 1061 360 64 0 0 chr9 62420500 62420547 -61655625 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1061 568 296 96 7 chr9 62420547 62420873 -61655299 + L1MEc LINE L1 1778 2146 -4472 1 1061 372 252 127 22 chr9 62420948 62421251 -61654921 + L1MEc LINE L1 2453 2801 -3736 1 1061 352 200 27 144 chr9 62421251 62421283 -61654889 + MT2B LTR ERVL 136 150 -451 1 1061 746 221 0 14 chr9 62421283 62421425 -61654747 + B1_Mur1 SINE Alu 2 141 -8 1 1061 203 161 18 0 chr9 62421653 62421709 -61654463 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1061 561 223 0 0 chr9 62421729 62421895 -61654277 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 1061 246 316 69 20 chr9 62421895 62422098 -61654074 + L1MEc LINE L1 3090 3302 -3235 1 1061 382 200 157 28 chr9 62422405 62422513 -61653659 - RSINE1 SINE B4 -29 136 15 1 1061 1533 218 166 92 chr9 62422526 62423081 -61653091 + RMER20B LTR ERVK 3 598 -29 1 1061 588 265 15 0 chr9 62423102 62423234 -61652938 - ID_B1 SINE B4 -5 219 86 1 1061 1457 70 11 0 chr9 62423470 62423656 -61652516 + B2_Mm1t SINE B2 1 188 -5 1 1061 455 206 76 38 chr9 62423740 62423871 -61652301 + RMER17C LTR ERVK 23 158 -252 1 1061 435 339 0 0 chr9 62423912 62424024 -61652148 + RSINE1 SINE B4 35 146 -19 1 1061 604 352 38 13 chr9 62424093 62424329 -61651843 + B4A SINE B4 42 283 -9 1 1061 253 287 50 0 chr9 62424401 62424502 -61651670 + L1ME1 LINE L1 6045 6150 -29 1 1061 662 254 120 11 chr9 62424574 62424765 -61651407 - B4 SINE B4 -77 215 4 1 1061 1105 108 11 0 chr9 62425722 62425898 -61650274 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 1061 351 0 0 0 chr9 62425898 62425937 -61650235 + (GAA)n Simple_repeat Simple_repeat 3 41 0 1 1061 354 23 0 0 chr9 62425937 62425980 -61650192 + (CAG)n Simple_repeat Simple_repeat 2 44 0 1 1061 819 323 20 69 chr9 62425983 62426201 -61649971 + B4A SINE B4 1 212 -80 1 1061 357 43 0 0 chr9 62426201 62426248 -61649924 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1061 819 323 20 69 chr9 62426248 62426335 -61649837 + B4A SINE B4 213 291 -1 1 1061 3645 38 28 0 chr9 62426606 62427030 -61649142 + RLTR10C LTR ERVK 1 436 0 1 1061 2841 58 0 3 chr9 62427030 62427374 -61648798 + MMERVK10C-int LTR ERVK 1 343 -7238 1 1061 751 203 33 8 chr9 62427372 62427630 -61648542 + MMERVK10C-int LTR ERVK 729 952 -6629 1 1061 827 182 261 27 chr9 62427702 62427962 -61648210 + MMERVK10C-int LTR ERVK 291 611 -4795 1 1061 369 231 148 40 chr9 62427958 62428107 -61648065 + MMERVK10C-int LTR ERVK 524 688 -5449 1 1061 404 117 6 58 chr9 62428091 62428219 -61647953 + MMERVK10C-int LTR ERVK 1721 1947 -5634 1 1061 28690 29 0 0 chr9 62428225 62431483 -61644689 + MMERVK10C-int LTR ERVK 2552 5810 -1771 1 1061 317 71 0 0 chr9 62431474 62431516 -61644656 + MMERVK10C-int LTR ERVK 6651 6692 -889 1 1061 2755 60 6 0 chr9 62431544 62431878 -61644294 + MMERVK10C-int LTR ERVK 6688 7023 -558 1 1061 1320 60 0 0 chr9 62431878 62432045 -61644127 + RLTR10C LTR ERVK 270 436 0 1 1061 427 200 160 0 chr9 62432045 62432142 -61644030 + B1_Mur2 SINE Alu 36 148 -1 1 1061 839 133 59 0 chr9 62432467 62432602 -61643570 - B1_Mus2 SINE Alu 0 147 5 1 1061 346 322 50 23 chr9 62433100 62433361 -61642811 + L1MEg LINE L1 708 975 -5267 1 1061 868 314 82 35 chr9 62433415 62434148 -61642024 + L1MEg LINE L1 1122 1888 -4354 1 1061 21 36 0 0 chr9 62434206 62434234 -61641938 + AT_rich Low_complexity Low_complexity 1 28 0 1 1061 293 261 93 43 chr9 62434288 62434428 -61641744 + L1MEg LINE L1 2110 2256 -3890 1 1061 3461 211 122 11 chr9 62434459 62435395 -61640777 + Lx6 LINE L1 6387 7447 -13 1 1061 23 0 0 0 chr9 62435427 62435450 -61640722 + AT_rich Low_complexity Low_complexity 1 23 0 1 1061 345 82 0 0 chr9 62435451 62435500 -61640672 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1061 213 175 0 0 chr9 62435518 62435558 -61640614 + GA-rich Low_complexity Low_complexity 1 40 0 1 1061 421 266 114 54 chr9 62435558 62435954 -61640218 + RLTR15 LTR ERVK 5 341 -18 1 1061 601 287 112 25 chr9 62435961 62436122 -61640050 - B3A SINE B2 -22 176 2 1 1061 351 0 0 0 chr9 62436166 62436205 -61639967 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1061 544 200 40 0 chr9 62436344 62436444 -61639728 + PB1D10 SINE Alu 5 108 -9 1 1061 964 179 196 0 chr9 62436444 62436623 -61639549 + B3 SINE B2 3 216 0 1 1061 189 121 0 0 chr9 62436714 62436747 -61639425 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 1 1061 1690 89 73 146 chr9 62436926 62436988 -61639184 - ORR1A3 LTR MaLR -8 318 270 1 1061 1123 73 0 0 chr9 62436988 62437125 -61639047 + B1_Mus1 SINE Alu 2 138 -10 1 1061 1690 89 73 146 chr9 62437125 62437404 -61638768 - ORR1A3 LTR MaLR -57 269 2 1 1061 241 344 11 0 chr9 62437406 62437499 -61638673 + CT-rich Low_complexity Low_complexity 1 94 0 1 1061 1010 221 39 113 chr9 62437535 62437917 -61638255 + ORR1E LTR MaLR 1 354 -5 1 1061 291 272 0 46 chr9 62438271 62438379 -61637793 + GA-rich Low_complexity Low_complexity 3 105 0 1 1061 1746 178 132 14 chr9 62439375 62439745 -61636427 - MTC LTR MaLR -7 414 1 1 1061 1051 218 62 65 chr9 62440271 62440317 -61635855 + B4 SINE B4 3 41 -251 1 1061 1606 172 43 107 chr9 62440317 62440708 -61635464 + ORR1B2 LTR MaLR 2 367 0 1 1061 1051 218 62 65 chr9 62440708 62440951 -61635221 + B4 SINE B4 42 291 -1 1 1061 241 213 21 0 chr9 62441321 62441368 -61634804 + MIRc SINE MIR 114 161 -107 1 1061 974 146 332 14 chr9 62441511 62441788 -61634384 + ORR1D2 LTR MaLR 1 365 -5 1 1061 202 344 62 31 chr9 62441879 62441975 -61634197 - MIRc SINE MIR -143 125 27 1 1061 1648 170 47 152 chr9 62442481 62442910 -61633262 + ORR1C2 LTR MaLR 1 384 0 1 1061 255 318 135 65 chr9 62443185 62443400 -61632772 + Kanga1 DNA Tc2 5 234 -1511 1 1061 834 271 19 5 chr9 62443403 62443611 -61632561 - ID_B1 SINE B4 -13 211 1 1 1061 365 331 106 61 chr9 62443657 62443921 -61632251 + Kanga1 DNA Tc2 305 580 -1165 1 1061 257 132 74 19 chr9 62444220 62444274 -61631898 - PB1D10 SINE Alu -1 116 60 1 1061 717 202 0 0 chr9 62444447 62444566 -61631606 - B1_Mur1 SINE Alu -29 120 2 1 1061 340 313 36 72 chr9 62444566 62444601 -61631571 - B4A SINE B4 -202 90 61 1 1061 274 205 35 46 chr9 62444715 62444802 -61631370 - B2_Mm2 SINE B2 -2 193 108 1 1061 229 125 24 24 chr9 62444816 62444857 -61631315 + B2_Mm2 SINE B2 50 90 -105 1 1061 307 295 80 123 chr9 62445018 62445352 -61630820 + MLT1A1 LTR MaLR 5 309 -65 1 1061 477 0 0 0 chr9 62445352 62445405 -61630767 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1061 252 296 98 157 chr9 62445405 62445440 -61630732 + MLT1A1 LTR MaLR 310 353 -21 1 1061 465 266 179 23 chr9 62445453 62445715 -61630457 + L1M5 LINE L1 4096 4398 -1748 1 1061 339 78 0 0 chr9 62446325 62446376 -61629796 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1061 473 194 8 194 chr9 62446385 62446519 -61629653 - RSINE1 SINE B4 -40 125 17 1 1061 767 262 32 23 chr9 62446850 62447069 -61629103 + B4A SINE B4 8 228 -64 1 1061 38896 22 0 6 chr9 62447137 62453132 -61623040 - L1Md_T LINE L1 -1 6581 631 1 1061 604 290 190 19 chr9 62453264 62453535 -61622637 - MLT1D LTR MaLR 0 505 186 1 1061 673 250 39 103 chr9 62453535 62453847 -61622325 - B4 SINE B4 0 292 1 1 1061 604 290 190 19 chr9 62453847 62453891 -61622281 - MLT1D LTR MaLR -320 185 136 1 1061 2373 115 50 68 chr9 62453915 62454315 -61621857 + ORR1B1 LTR MaLR 2 394 0 1 1061 513 84 0 0 chr9 62454834 62454905 -61621267 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1061 533 284 77 94 chr9 62455412 62455431 -61620741 - B4 SINE B4 -51 241 203 1 1061 604 139 173 39 chr9 62455431 62455558 -61620614 - B1_Mur2 SINE Alu 0 149 6 1 1061 533 284 77 94 chr9 62455558 62455645 -61620527 - B4 SINE B4 -51 202 13 1 1061 469 238 26 71 chr9 62455714 62455868 -61620304 - B1F SINE Alu 0 149 3 1 1061 508 301 48 48 chr9 62456082 62456291 -61619881 - MLT2B1 LTR ERVL -9 558 350 1 1061 729 53 0 0 chr9 62456386 62456480 -61619692 + (GAATG)n Simple_repeat Simple_repeat 2 95 0 1 1061 1977 154 94 0 chr9 62456499 62456817 -61619355 + MTC LTR MaLR 2 349 -72 1 1061 301 285 148 26 chr9 62456846 62457001 -61619171 + L1MEe LINE L1 652 825 -4029 1 1061 232 302 14 87 chr9 62457003 62457141 -61619031 + RMER4B LTR ERVK 33 160 -425 1 1061 522 149 125 17 chr9 62457255 62457400 -61618772 + MTC LTR MaLR 256 421 0 1 1061 2652 147 75 28 chr9 62457410 62457914 -61618258 + RLTR12B LTR ERVK 1 528 0 1 1061 517 213 343 30 chr9 62458018 62458219 -61617953 - MTE2b LTR MaLR -115 264 1 1 1061 2775 110 16 126 chr9 62458438 62458939 -61617233 + RLTR41 LTR ERV1 1 446 0 1 1061 881 281 30 20 chr9 62459008 62459211 -61616961 - ID_B1 SINE B4 -10 214 10 1 1061 478 297 74 25 chr9 62460048 62460210 -61615962 + MIR SINE MIR 13 182 -80 1 1061 239 196 107 0 chr9 62460380 62460436 -61615736 + MIR SINE MIR 197 258 -4 1 1061 227 344 21 16 chr9 62462775 62462898 -61613274 + MIRc SINE MIR 12 136 -72 1 1061 271 241 0 17 chr9 62463036 62463095 -61613077 + ID4_ SINE ID 17 74 -9 1 1061 271 228 206 0 chr9 62463246 62463338 -61612834 - PB1 SINE Alu -2 125 15 1 1061 443 226 24 211 chr9 62463256 62463469 -61612703 - ID_B1 SINE B4 -46 178 6 1 1061 255 269 269 8 chr9 62463984 62464112 -61612060 + MIRc SINE MIR 13 157 -111 1 1061 1163 153 81 0 chr9 62464176 62464385 -61611787 - URR1A DNA MER1_type 0 226 1 1 1061 934 237 20 10 chr9 62465434 62465634 -61610538 + ID_B1 SINE B4 4 205 -19 1 1061 221 245 0 0 chr9 62465636 62465689 -61610483 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1061 543 279 56 97 chr9 62465689 62465894 -61610278 - L1MA8 LINE L1 -27 6264 6089 1 1061 962 144 0 0 chr9 62465894 62466033 -61610139 - B1_Mus2 SINE Alu -8 139 1 1 1061 543 279 56 97 chr9 62466033 62466168 -61610004 - L1MA8 LINE L1 -203 6088 5938 1 1061 1486 58 0 0 chr9 62466251 62466424 -61609748 + B2_Mm1a SINE B2 2 174 -19 1 1061 576 185 201 19 chr9 62466450 62466604 -61609568 - Lx8 LINE L1 -395 7078 6897 1 1061 988 181 67 6 chr9 62466667 62466845 -61609327 - B3 SINE B2 0 216 28 1 1061 501 292 35 80 chr9 62466861 62466886 -61609286 - B3A SINE B2 -4 194 171 1 1061 408 67 0 0 chr9 62466886 62466946 -61609226 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1061 501 292 35 80 chr9 62466946 62467121 -61609051 - B3A SINE B2 -28 170 3 1 1061 387 266 17 34 chr9 62467213 62467330 -61608842 - L1MA8 LINE L1 -413 5776 5662 1 1061 486 0 0 0 chr9 62467425 62467479 -61608693 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1061 1169 234 68 132 chr9 62468060 62468531 -61607641 - RMER4B LTR ERVK 0 466 39 1 1061 216 0 0 0 chr9 62468531 62468555 -61607617 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1061 1169 244 147 32 chr9 62468555 62468581 -61607591 - RMER4B LTR ERVK -546 39 2 1 1061 195 306 95 43 chr9 62469120 62469236 -61606936 + MIRb SINE MIR 3 124 -144 1 1061 416 298 198 8 chr9 62469297 62469361 -61606811 - B4A SINE B4 -6 286 215 1 1061 687 84 0 0 chr9 62469361 62469456 -61606716 + (TTTC)n Simple_repeat Simple_repeat 1 95 0 1 1061 416 298 198 8 chr9 62469456 62469628 -61606544 - B4A SINE B4 -78 214 5 1 1061 227 333 10 0 chr9 62470342 62470438 -61605734 - L1MC3 LINE L1 -167 7618 7522 1 1061 3383 30 5 5 chr9 62470927 62471323 -61604849 + MTA_Mm LTR MaLR 1 396 0 1 1061 204 40 0 0 chr9 62471403 62471428 -61604744 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1061 423 0 0 0 chr9 62471428 62471474 -61604698 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1061 468 283 18 0 chr9 62471474 62471587 -61604585 - RSINE1 SINE B4 -50 115 1 1 1061 634 286 43 43 chr9 62471587 62471772 -61604400 + RMER30 DNA MER1_type 8 192 -10 1 1061 978 286 30 11 chr9 62471939 62472208 -61603964 + B4 SINE B4 5 278 -14 1 1061 333 0 0 0 chr9 62472228 62472265 -61603907 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1061 297 0 0 0 chr9 62472265 62472297 -61603875 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1061 261 57 0 0 chr9 62472979 62473014 -61603158 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1061 369 0 0 0 chr9 62473019 62473060 -61603112 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1061 945 259 70 26 chr9 62473068 62473341 -61602831 - B4A SINE B4 -3 289 5 1 1061 225 159 0 0 chr9 62473354 62473398 -61602774 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1061 998 258 54 88 chr9 62473424 62473718 -61602454 - B4 SINE B4 -8 284 1 1 1061 227 254 18 0 chr9 62473783 62473838 -61602334 + L2a LINE L2 3370 3425 -1 1 1061 1305 105 130 0 chr9 62474116 62474316 -61601856 + URR1A DNA MER1_type 1 226 0 1 1061 939 171 56 51 chr9 62476528 62476725 -61599447 - URR1B DNA MER1_type -27 198 1 1 1061 940 243 34 38 chr9 62477556 62477791 -61598381 + B4A SINE B4 1 234 -58 1 1061 450 0 0 0 chr9 62478081 62478131 -61598041 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1061 1094 194 88 16 chr9 62478131 62478433 -61597739 + ORR1D1 LTR MaLR 2 376 -8 1 1061 312 27 0 0 chr9 62478435 62478472 -61597700 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1061 242 56 0 27 chr9 62478689 62478726 -61597446 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 1 1061 299 164 36 18 chr9 62479079 62479135 -61597037 - MTEa LTR MaLR 0 379 323 1 1061 326 296 10 20 chr9 62479122 62479222 -61596950 + MTE-int LTR MaLR 1475 1573 -7 1 1061 1045 260 127 87 chr9 62479290 62479795 -61596377 - Lx8 LINE L1 -60 7413 6889 1 1061 227 224 99 62 chr9 62479875 62479956 -61596216 - MLT1H-int LTR MaLR -462 947 864 1 1061 187 189 35 86 chr9 62480239 62480297 -61595875 + MIR3 SINE MIR 101 155 -53 1 1061 578 269 99 5 chr9 62481014 62481227 -61594945 + Lx8 LINE L1 6902 7134 -339 1 1061 283 73 0 35 chr9 62481248 62481305 -61594867 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 1 1061 416 313 55 173 chr9 62481595 62481924 -61594248 + B4 SINE B4 1 290 -2 1 1061 369 0 0 0 chr9 62481950 62481991 -61594181 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1061 342 0 0 0 chr9 62481991 62482028 -61594144 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1061 482 133 11 0 chr9 62482028 62482118 -61594054 + (GA)n Simple_repeat Simple_repeat 1 91 0 1 1061 1024 216 40 5 chr9 62482143 62482343 -61593829 + ID_B1 SINE B4 1 207 -17 1 1061 426 151 0 0 chr9 62482352 62482425 -61593747 + (TGGA)n Simple_repeat Simple_repeat 3 75 0 1 1061 3394 53 0 0 chr9 62482682 62483078 -61593094 + MTA_Mm LTR MaLR 1 396 0 1 1061 227 235 167 56 chr9 62483090 62483180 -61592992 - MLT1K LTR MaLR -75 520 421 1 1061 376 200 0 67 chr9 62483252 62483445 -61592727 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1061 1227 254 21 7 chr9 62483445 62483731 -61592441 - B4 SINE B4 0 292 3 1 1061 180 294 58 14 chr9 62483979 62484048 -61592124 - MIR SINE MIR -157 105 34 1 1061 309 298 35 9 chr9 62484329 62484444 -61591728 - L1MD1 LINE L1 -25 6334 6217 1 1061 1548 266 60 28 chr9 62484802 62485364 -61590808 - L1MD1 LINE L1 -120 6122 5539 1 1061 943 120 13 0 chr9 62485364 62485522 -61590650 + (TTCCC)n Simple_repeat Simple_repeat 1 160 0 1 1061 478 268 113 5 chr9 62485524 62485719 -61590453 - ID_B1 SINE B4 -7 217 2 1 1061 1225 292 79 49 chr9 62485719 62486591 -61589581 - L1MD1 LINE L1 -821 5538 4641 1 1061 396 0 0 0 chr9 62486613 62486657 -61589515 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1061 918 150 0 22 chr9 62486795 62486979 -61589193 + G-rich Low_complexity Low_complexity 1 180 0 1 1061 283 189 249 25 chr9 62487008 62487100 -61589072 - B3A SINE B2 -104 112 1 1 1061 333 302 105 12 chr9 62487110 62487281 -61588891 - L1MD1 LINE L1 -1499 4647 4461 1 1061 317 292 230 40 chr9 62487387 62487944 -61588228 - L1MD1 LINE L1 -1701 4445 3783 1 1061 330 26 0 0 chr9 62488189 62488228 -61587944 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1061 247 200 22 0 chr9 62488258 62488303 -61587869 + B4A SINE B4 2 47 -245 1 1061 228 371 146 0 chr9 62488328 62488417 -61587755 - L2b LINE L2 -2 3373 3272 1 1061 332 104 88 99 chr9 62488638 62488819 -61587353 + (CAGCC)n Simple_repeat Simple_repeat 1 179 0 1 1061 184 396 59 10 chr9 62489296 62489398 -61586774 + L2b LINE L2 3259 3365 -10 1 1061 964 100 0 15 chr9 62489654 62489786 -61586386 - B2_Mm2 SINE B2 -64 131 2 1 1061 222 153 27 27 chr9 62490525 62490599 -61585573 + T-rich Low_complexity Low_complexity 4 77 0 1 1061 971 137 0 20 chr9 62490604 62490753 -61585419 - B1_Mur3 SINE Alu -1 148 3 1 1061 1041 170 75 5 chr9 62491062 62491263 -61584909 + B3 SINE B2 1 215 -1 1 1061 25 0 0 0 chr9 62491264 62491289 -61584883 + AT_rich Low_complexity Low_complexity 1 25 0 1 1061 748 306 115 0 chr9 62491309 62491561 -61584611 + B4A SINE B4 8 288 -4 1 1061 807 263 134 8 chr9 62491916 62492169 -61584003 + B4 SINE B4 8 292 0 1 1061 215 253 47 104 chr9 62493101 62493207 -61582965 - L2c LINE L2 -262 3125 3026 1 1061 238 291 133 19 chr9 62494378 62494483 -61581689 + MIRc SINE MIR 35 151 -117 1 1061 308 64 0 21 chr9 62495077 62495125 -61581047 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1061 333 62 0 0 chr9 62495125 62495173 -61580999 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1061 708 154 0 0 chr9 62495182 62495357 -61580815 + (TG)n Simple_repeat Simple_repeat 1 175 0 1 1061 1173 248 43 11 chr9 62495370 62495546 -61580626 - B4A SINE B4 0 292 108 1 1061 306 0 0 0 chr9 62495546 62495580 -61580592 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1061 1173 248 43 11 chr9 62495580 62495680 -61580492 - B4A SINE B4 -185 107 9 1 1061 222 37 0 0 chr9 62496058 62496085 -61580087 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1061 522 266 9 18 chr9 62496158 62496269 -61579903 - PB1D10 SINE Alu -6 111 2 1 1061 542 141 0 12 chr9 62496843 62496929 -61579243 + B1_Mur4 SINE Alu 54 138 -12 1 1061 509 230 62 0 chr9 62496935 62497048 -61579124 + B4 SINE B4 110 229 -63 1 1061 198 0 0 0 chr9 62497050 62497072 -61579100 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1061 921 240 58 10 chr9 62497076 62497282 -61578890 + B4A SINE B4 1 216 -76 1 1061 28 29 0 0 chr9 62497947 62497982 -61578190 + AT_rich Low_complexity Low_complexity 1 35 0 1 1061 1271 217 13 22 chr9 62498230 62498541 -61577631 - Lx7 LINE L1 -1800 5896 5589 1 1061 645 279 72 13 chr9 62498556 62498792 -61577380 - L1M5 LINE L1 -976 5170 4921 1 1061 249 305 37 0 chr9 62498868 62498950 -61577222 - L1M5 LINE L1 -1346 4800 4716 1 1061 1195 161 14 47 chr9 62499006 62499221 -61576951 - B3 SINE B2 -7 209 2 1 1061 263 307 76 20 chr9 62499278 62499527 -61576645 - L1M5 LINE L1 -1465 4681 4419 1 1061 209 225 0 0 chr9 62499549 62499569 -61576603 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1061 225 0 0 0 chr9 62499569 62499594 -61576578 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1061 209 225 0 0 chr9 62499594 62499613 -61576559 + (TG)n Simple_repeat Simple_repeat 1 19 0 1 1061 338 345 61 35 chr9 62499801 62499999 -61576173 - L1ME3A LINE L1 -298 5875 5673 1 1061 267 294 43 11 chr9 62500128 62500221 -61575951 - PB1 SINE Alu -31 96 1 1 1061 749 239 0 13 chr9 62500221 62500299 -61575873 - ID SINE ID -146 78 3 2 1061 1087 123 35 6 chr9 62500848 62501019 -61575153 + B2_Mm2 SINE B2 2 177 -18 3 1061 25 0 0 0 chr9 62501033 62501058 -61575114 + AT_rich Low_complexity Low_complexity 1 25 0 4 1061 202 270 106 53 chr9 62501063 62501157 -61575015 - MIRc SINE MIR -150 118 20 5 1061 1143 274 65 35 chr9 62501225 62501592 -61574580 + MTE2a LTR MaLR 2 379 0 6 1061 655 163 36 4 chr9 62501730 62501983 -61574189 + GA-rich Low_complexity Low_complexity 1 260 0 7 1061 182 274 59 0 chr9 62502543 62502594 -61573578 - L2c LINE L2 -76 3311 3258 8 1061 412 250 9 37 chr9 62502635 62502743 -61573429 - U6 snRNA snRNA -1 106 2 9 1061 262 213 66 0 chr9 62502848 62502909 -61573263 - MIR SINE MIR -61 147 83 1 1061 293 245 204 0 chr9 62503183 62503281 -61572891 + L2c LINE L2 3270 3387 0 1 1061 1054 238 24 5 chr9 62503536 62503743 -61572429 + ID_B1 SINE B4 14 224 0 1 1061 552 244 15 85 chr9 62503746 62503876 -61572296 + B1_Mur2 SINE Alu 2 122 -27 1 1061 378 0 0 0 chr9 62503886 62503928 -61572244 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1061 970 274 112 60 chr9 62503947 62504296 -61571876 - Lx6 LINE L1 -30 7430 7064 1 1061 413 191 405 7 chr9 62504310 62504463 -61571709 - B3 SINE B2 0 216 3 1 1061 334 289 121 0 chr9 62504496 62504579 -61571593 + LTR53 LTR ERVL 1 93 -426 1 1061 687 235 178 32 chr9 62504580 62504861 -61571311 + LTR53 LTR ERVL 198 519 0 1 1061 232 324 0 0 chr9 62505433 62505501 -61570671 + CT-rich Low_complexity Low_complexity 1 68 0 1 1061 543 229 99 63 chr9 62505615 62505806 -61570366 - B3A SINE B2 0 198 1 1 1061 226 372 39 10 chr9 62505807 62505910 -61570262 + MLT1L LTR MaLR 159 264 -346 2 1061 867 199 0 0 chr9 62506254 62506400 -61569772 - B1_Mur1 SINE Alu -2 147 2 2 1061 198 163 184 0 chr9 62506443 62506492 -61569680 + L2a LINE L2 3367 3424 -2 2 1061 186 71 0 0 chr9 62506766 62506794 -61569378 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1061 726 44 0 0 chr9 62507318 62507408 -61568764 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 2 1061 3304 48 2 10 chr9 62507419 62507818 -61568354 + MTA_Mm LTR MaLR 1 396 0 2 1061 379 348 20 34 chr9 62507912 62508058 -61568114 + B4 SINE B4 1 144 -148 2 1061 237 65 0 0 chr9 62508253 62508284 -61567888 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1061 495 0 0 0 chr9 62508284 62508338 -61567834 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1061 574 320 77 141 chr9 62508346 62508759 -61567413 + L1MEg LINE L1 1031 1434 -4808 2 1061 1277 21 7 0 chr9 62508759 62508903 -61567269 - B1_Mus2 SINE Alu -1 146 2 3 1061 574 320 77 141 chr9 62508903 62509046 -61567126 + L1MEg LINE L1 1435 1543 -4699 2 1061 1203 186 5 23 chr9 62509046 62509266 -61566906 + B3 SINE B2 1 216 0 3 1061 574 320 77 141 chr9 62509266 62509360 -61566812 + L1MEg LINE L1 1544 1640 -4602 2 1061 278 254 16 0 chr9 62509360 62509453 -61566719 - ID4 SINE ID -51 101 5 3 1061 369 308 45 8 chr9 62509483 62509617 -61566555 - B1F SINE Alu -10 139 1 3 1061 528 309 17 33 chr9 62509734 62509915 -61566257 + B3A SINE B2 5 182 -16 3 1061 317 362 45 30 chr9 62510042 62510244 -61565928 + L1MEg LINE L1 1878 2082 -4160 2 1061 862 221 23 5 chr9 62510296 62510491 -61565681 + ORR1E LTR MaLR 3 193 -191 3 1061 396 103 0 0 chr9 62510500 62510558 -61565614 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 3 1061 756 212 77 22 chr9 62510560 62510743 -61565429 + ORR1E LTR MaLR 171 363 -7 3 1061 284 325 45 41 chr9 62510825 62510955 -61565217 + L1MEg LINE L1 2265 2400 -3746 2 1061 1017 149 10 96 chr9 62510955 62511163 -61565009 + B2_Mm2 SINE B2 1 190 -5 3 1061 284 325 45 41 chr9 62511163 62511298 -61564874 + L1MEg LINE L1 2401 2531 -3615 2 1061 608 319 52 0 chr9 62511347 62511538 -61564634 - MIR SINE MIR -20 242 42 3 1061 408 184 0 0 chr9 62511540 62511616 -61564556 - MLT2B3 LTR ERVL -478 76 1 3 1061 193 300 0 16 chr9 62512300 62512361 -61563811 - MIRb SINE MIR 0 268 209 4 1061 273 208 113 19 chr9 62512385 62512516 -61563656 + MIR SINE MIR 8 160 -116 4 1061 1184 233 118 63 chr9 62512804 62513040 -61563132 - MTE2b LTR MaLR 0 379 147 4 1061 1286 264 13 63 chr9 62513040 62513437 -61562735 + MTE2a LTR MaLR 2 378 -1 4 1061 1184 233 118 63 chr9 62513437 62513548 -61562624 - MTE2b LTR MaLR -233 146 13 4 1061 273 109 0 0 chr9 62514570 62514616 -61561556 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1061 215 154 0 0 chr9 62514754 62514793 -61561379 + MIR SINE MIR 45 83 -179 4 1061 348 365 48 24 chr9 62514892 62515100 -61561072 - LTR16C LTR ERVL -94 395 183 4 1061 239 118 0 0 chr9 62515660 62515694 -61560478 - tRNA-Lys-AAG tRNA tRNA -40 36 3 4 1061 910 219 48 0 chr9 62515730 62515917 -61560255 - B3A SINE B2 -2 196 1 4 1061 349 96 0 19 chr9 62516340 62516393 -61559779 - HAL1-3A_ME LINE L1 -831 2027 1976 4 1061 231 103 0 0 chr9 62516424 62516463 -61559709 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 5 1061 543 169 24 16 chr9 62516466 62516720 -61559452 + (TG)n Simple_repeat Simple_repeat 1 256 0 5 1061 699 227 111 43 chr9 62516968 62517175 -61558997 - ID_B1 SINE B4 -3 221 1 5 1061 186 262 82 0 chr9 62517410 62517471 -61558701 + MIRc SINE MIR 30 95 -173 5 1061 377 211 151 55 chr9 62518026 62518156 -61558016 - PB1D10 SINE Alu -4 144 1 5 1061 961 262 68 116 chr9 62518211 62518398 -61557774 + Lx8 LINE L1 6924 7123 -350 5 1061 751 164 107 0 chr9 62518398 62518520 -61557652 + B1_Mus2 SINE Alu 1 135 -12 5 1061 961 262 68 116 chr9 62518520 62518910 -61557262 + Lx8 LINE L1 7124 7473 0 5 1061 396 0 0 0 chr9 62519378 62519422 -61556750 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1061 306 0 0 0 chr9 62519838 62519872 -61556300 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1061 329 345 0 0 chr9 62519882 62519966 -61556206 - PB1D10 SINE Alu -29 88 5 5 1061 292 342 0 0 chr9 62519961 62520040 -61556132 + MER81 DNA AcHobo 25 103 -11 6 1061 310 355 122 58 chr9 62520537 62520881 -61555291 + MLT1K LTR MaLR 129 494 -101 6 1061 246 258 75 68 chr9 62520935 62521068 -61555104 + MLT1K LTR MaLR 455 588 -7 6 1061 198 366 61 0 chr9 62521071 62521153 -61555019 + MIRb SINE MIR 126 212 -56 6 1061 515 255 22 0 chr9 62521182 62521334 -61554838 + L1MB7 LINE L1 5511 5656 -230 6 1062 1234 252 73 18 chr9 62521475 62521924 -61554248 + L1MB7 LINE L1 5647 6120 -64 6 1062 759 251 151 0 chr9 62522132 62522331 -61553841 + B4A SINE B4 2 233 -59 6 1062 783 257 70 1 chr9 62522331 62522519 -61553653 + B3A SINE B2 1 204 -12 6 1062 3000 234 137 13 chr9 62522519 62523419 -61552753 - RMER1A Other Other -5 1025 15 6 1062 279 207 67 33 chr9 62523403 62523493 -61552679 - RMER1B Other Other -651 415 323 6 1062 448 234 0 0 chr9 62523493 62523570 -61552602 + ID4 SINE ID 3 79 -4 6 1062 282 299 0 60 chr9 62523732 62524002 -61552170 + (CCTAG)n Simple_repeat Simple_repeat 1 253 0 6 1062 238 305 0 60 chr9 62523972 62524157 -61552015 + (TCCTG)n Simple_repeat Simple_repeat 1 174 0 7 1062 420 244 0 0 chr9 62524369 62524496 -61551676 + CT-rich Low_complexity Low_complexity 1 127 0 7 1062 189 0 0 0 chr9 62527737 62527758 -61548414 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1062 479 206 0 6 chr9 62527908 62528074 -61548098 + (TG)n Simple_repeat Simple_repeat 1 165 0 7 1062 567 296 26 140 chr9 62528074 62528302 -61547870 - B4 SINE B4 0 292 91 7 1062 246 358 63 0 chr9 62528574 62528669 -61547503 + MIRb SINE MIR 125 225 -43 7 1062 976 237 87 11 chr9 62529575 62529840 -61546332 + B4A SINE B4 2 286 -6 7 1062 258 274 171 0 chr9 62530135 62530252 -61545920 + MIR SINE MIR 13 149 -113 7 1062 558 272 5 99 chr9 62530392 62530604 -61545568 - B3A SINE B2 -5 193 2 7 1062 218 234 28 130 chr9 62530708 62530816 -61545356 - B4A SINE B4 -167 125 29 7 1062 252 194 107 143 chr9 62530750 62530834 -61545338 - ID4_ SINE ID -1 82 2 8 1062 207 0 0 0 chr9 62531295 62531318 -61544854 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 8 1062 387 308 67 37 chr9 62531913 62532048 -61544124 - MER45A DNA Tip100 0 178 40 8 1062 1189 223 80 55 chr9 62532900 62533261 -61542911 - ORR1D2 LTR MaLR 0 370 1 8 1062 219 248 184 19 chr9 62533462 62533565 -61542607 + L2a LINE L2 3307 3426 0 8 1062 1056 247 23 0 chr9 62534665 62534884 -61541288 - ID_B1 SINE B4 0 224 1 8 1062 357 123 0 0 chr9 62535247 62535312 -61540860 + (TG)n Simple_repeat Simple_repeat 1 65 0 8 1062 634 286 140 47 chr9 62535335 62535570 -61540602 - B4 SINE B4 -22 270 14 8 1062 231 290 71 45 chr9 62535717 62535829 -61540343 - L3 LINE CR1 -85 4404 4290 8 1062 637 213 0 30 chr9 62535864 62535987 -61540185 + B1_Mur3 SINE Alu 19 138 -11 8 1062 198 0 0 0 chr9 62535987 62536009 -61540163 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1062 181 254 56 56 chr9 62536651 62536722 -61539450 - MIR3 SINE MIR -38 170 100 9 1062 238 214 200 12 chr9 62536852 62536937 -61539235 - L2b LINE L2 -1 3374 3274 9 1062 546 16 0 0 chr9 62536990 62537053 -61539119 + (GA)n Simple_repeat Simple_repeat 1 63 0 9 1062 739 249 157 21 chr9 62537095 62537337 -61538835 - B4 SINE B4 -16 276 2 9 1062 352 296 161 27 chr9 62537338 62537487 -61538685 - MER63A DNA AcHobo -41 169 1 9 1062 227 268 55 158 chr9 62537692 62537838 -61538334 + ZP3AR Satellite Satellite 46 176 -36 9 1062 1123 225 63 33 chr9 62537822 62538093 -61538079 + B4 SINE B4 14 292 0 9 1062 252 114 71 0 chr9 62538120 62538190 -61537982 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 9 1062 452 148 33 0 chr9 62538384 62538506 -61537666 + (TG)n Simple_repeat Simple_repeat 1 126 0 9 1062 991 137 0 11 chr9 62538654 62538831 -61537341 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 1 1062 243 88 0 0 chr9 62540101 62540135 -61536037 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1062 338 298 47 76 chr9 62540233 62540404 -61535768 + HAL1-3A_ME LINE L1 2283 2448 -410 1 1062 248 306 50 20 chr9 62541129 62541229 -61534943 - MIR SINE MIR -89 119 17 1 1062 1243 216 111 80 chr9 62541503 62541855 -61534317 - MTE2b LTR MaLR -16 363 1 1 1062 200 309 79 31 chr9 62542335 62542462 -61533710 - MIR SINE MIR -57 151 19 1 1062 1043 271 54 33 chr9 62542651 62542930 -61533242 + B4 SINE B4 5 288 -4 1 1062 228 163 0 0 chr9 62542946 62542989 -61533183 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1 1062 181 333 48 0 chr9 62543015 62543078 -61533094 + MIR SINE MIR 80 145 -117 1 1062 201 108 0 0 chr9 62543890 62543927 -61532245 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1062 2649 160 52 52 chr9 62544959 62545512 -61530660 - RLTR31_Mur LTR ERVK 0 553 1 1 1062 306 260 6 13 chr9 62546137 62546293 -61529879 + CT-rich Low_complexity Low_complexity 2 156 0 1 1062 322 266 35 0 chr9 62546433 62546537 -61529635 - L1ME3 LINE L1 -133 6040 5934 1 1062 458 236 7 0 chr9 62546570 62546714 -61529458 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1062 344 319 81 70 chr9 62546718 62547160 -61529012 - L1ME3 LINE L1 -242 5920 5474 1 1062 1076 220 18 18 chr9 62547299 62547517 -61528655 + ID_B1 SINE B4 1 218 -6 1 1062 262 315 181 3 chr9 62547537 62547928 -61528244 - L1ME3 LINE L1 -1425 4721 4258 1 1062 420 20 0 0 chr9 62547955 62548004 -61528168 + (TTA)n Simple_repeat Simple_repeat 1 49 0 1 1062 655 253 18 55 chr9 62548006 62548169 -61528003 - RSINE1 SINE B4 -1 164 8 1 1062 226 316 83 57 chr9 62548213 62548441 -61527731 - L1ME3 LINE L1 -1950 4196 3963 1 1062 245 51 26 0 chr9 62548448 62548487 -61527685 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1062 750 271 81 14 chr9 62548494 62548704 -61527468 - ID_B1 SINE B4 0 224 1 1 1062 224 227 0 0 chr9 62548865 62548909 -61527263 + T-rich Low_complexity Low_complexity 4 47 0 1 1062 433 132 44 0 chr9 62548959 62549050 -61527122 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 1 1062 572 94 125 0 chr9 62549065 62549161 -61527011 - B1_Mur3 SINE Alu -2 147 40 1 1062 321 102 41 0 chr9 62549191 62549240 -61526932 - PB1D9 SINE Alu -61 59 9 1 1062 581 248 14 7 chr9 62549302 62549448 -61526724 - Lx7 LINE L1 -664 7032 6886 1 1062 258 309 96 56 chr9 62549505 62549772 -61526400 - L1ME3 LINE L1 -2707 3439 3167 1 1062 932 172 200 0 chr9 62549772 62549952 -61526220 - B3 SINE B2 0 216 1 1 1062 368 280 121 30 chr9 62549952 62550321 -61525851 - L1ME3 LINE L1 -2980 3166 2776 1 1062 772 234 158 0 chr9 62550322 62550506 -61525666 - B3 SINE B2 -3 213 1 1 1062 286 123 30 15 chr9 62550574 62550640 -61525532 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 1 1062 884 163 28 0 chr9 62550659 62550800 -61525372 - B1_Mur3 SINE Alu -1 148 4 1 1062 383 296 61 34 chr9 62550914 62551061 -61525111 - L1ME3 LINE L1 -3557 2589 2439 1 1062 372 214 128 10 chr9 62551070 62551207 -61524965 - MTC LTR MaLR -39 380 220 1 1062 611 23 34 11 chr9 62551364 62551453 -61524719 - L1Md_F2 LINE L1 -2 6580 6490 1 1062 561 258 65 45 chr9 62551454 62551653 -61524519 - MTC LTR MaLR -218 203 1 1 1062 180 111 0 0 chr9 62551727 62551754 -61524418 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 1062 306 312 65 0 chr9 62551755 62551848 -61524324 - L1ME3 LINE L1 -3795 2351 2253 1 1062 697 298 0 0 chr9 62551904 62552082 -61524090 - B3A SINE B2 -18 180 3 1 1062 246 232 126 74 chr9 62552084 62552219 -61523953 - L1ME3 LINE L1 -3889 2277 2136 1 1062 289 189 54 0 chr9 62552232 62552306 -61523866 - ID4_ SINE ID -1 82 5 1 1062 252 0 0 0 chr9 62552370 62552398 -61523774 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1062 517 243 0 0 chr9 62552513 62552616 -61523556 - RSINE1 SINE B4 -60 105 3 1 1062 1200 62 7 0 chr9 62553039 62553185 -61522987 - B1_Mus2 SINE Alu 0 147 1 1 1062 240 224 206 15 chr9 62553353 62553421 -61522751 - ID2 SINE ID -2 81 1 1 1062 704 269 32 38 chr9 62553472 62553674 -61522498 - B3A SINE B2 -13 203 3 1 1062 1101 271 39 0 chr9 62553727 62554007 -61522165 + B4A SINE B4 1 291 -1 1 1062 232 188 15 15 chr9 62554052 62554117 -61522055 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 1 1062 243 289 34 26 chr9 62554124 62554241 -61521931 + (CATA)n Simple_repeat Simple_repeat 1 118 0 1 1062 580 234 9 0 chr9 62554282 62554393 -61521779 + ID_B1 SINE B4 45 156 -68 1 1062 1460 221 47 14 chr9 62555167 62555530 -61520642 - MTE2b LTR MaLR -4 375 1 1 1062 498 17 0 0 chr9 62555541 62555600 -61520572 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1062 199 284 136 17 chr9 62555782 62555900 -61520272 + MIRc SINE MIR 38 169 -99 1 1062 1354 258 28 20 chr9 62556889 62557245 -61518927 - MTEa LTR MaLR -1 378 20 1 1062 369 175 19 10 chr9 62557496 62557600 -61518572 + CT-rich Low_complexity Low_complexity 3 107 0 1 1062 477 0 0 0 chr9 62557615 62557668 -61518504 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1062 598 216 127 35 chr9 62558488 62558685 -61517487 + B3 SINE B2 2 216 0 1 1062 905 243 176 60 chr9 62558697 62559016 -61517156 + MTD LTR MaLR 24 404 -15 1 1062 213 384 15 39 chr9 62559273 62559403 -61516769 - MIRc SINE MIR -93 175 49 1 1062 781 240 42 60 chr9 62559641 62559858 -61516314 + ID_B1 SINE B4 1 213 -11 1 1062 331 293 8 16 chr9 62561331 62561456 -61514716 + MER2 DNA MER2_type 104 227 -118 1 1062 1587 57 0 0 chr9 62561456 62561648 -61514524 + B2_Mm1t SINE B2 2 193 0 1 1062 351 0 0 0 chr9 62561712 62561751 -61514421 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1062 663 260 175 36 chr9 62561801 62562052 -61514120 - B4A SINE B4 -6 286 1 1 1062 329 318 34 0 chr9 62562060 62562148 -61514024 + MER2 DNA MER2_type 254 344 -1 1 1062 384 309 32 8 chr9 62562156 62562172 -61514000 - B4 SINE B4 -75 217 91 1 1062 667 176 0 0 chr9 62562172 62562280 -61513892 - PB1D9 SINE Alu -7 113 6 1 1062 258 257 16 132 chr9 62562187 62562308 -61513864 - MT2B LTR ERVL -350 251 145 1 1062 258 0 71 0 chr9 62562360 62562402 -61513770 + (CCCCCA)n Simple_repeat Simple_repeat 3 47 0 1 1062 210 37 0 0 chr9 62562488 62562515 -61513657 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1062 1018 224 30 0 chr9 62563480 62563681 -61512491 + B3 SINE B2 3 209 -7 1 1062 333 93 0 0 chr9 62563932 62563986 -61512186 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1062 645 267 24 6 chr9 62564002 62564168 -61512004 + ID_B1 SINE B4 2 170 -54 1 1062 212 0 36 0 chr9 62564180 62564208 -61511964 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1062 269 214 71 0 chr9 62564449 62564519 -61511653 - ID4 SINE ID -8 75 1 1 1062 501 302 40 30 chr9 62564878 62565076 -61511096 - RMER30 DNA MER1_type -2 200 1 1 1062 263 272 79 39 chr9 62565538 62565644 -61510528 - MIR3 SINE MIR -53 155 45 1 1062 602 266 81 6 chr9 62567265 62567439 -61508733 + B4 SINE B4 1 187 -105 1 1062 357 62 0 0 chr9 62567443 62567491 -61508681 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1062 204 40 0 0 chr9 62567524 62567549 -61508623 + (GGGAGA)n Simple_repeat Simple_repeat 4 28 0 1 1062 448 209 11 0 chr9 62568030 62568121 -61508051 + RSINE1 SINE B4 37 128 -37 1 1062 285 278 89 0 chr9 62568209 62568299 -61507873 + PB1D10 SINE Alu 15 112 -5 1 1062 369 117 0 0 chr9 62568331 62568391 -61507781 + (GGA)n Simple_repeat Simple_repeat 2 61 0 1 1062 448 215 9 45 chr9 62568995 62569107 -61507065 - RSINE1 SINE B4 -48 117 10 1 1062 857 323 61 6 chr9 62569182 62569525 -61506647 - MLT2B4 LTR ERVL -186 370 9 1 1062 204 125 0 0 chr9 62569759 62569791 -61506381 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1062 432 0 0 0 chr9 62569922 62569970 -61506202 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1062 888 207 0 0 chr9 62571021 62571166 -61505006 + RSINE1 SINE B4 3 147 -18 1 1062 243 0 0 0 chr9 62571167 62571194 -61504978 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1062 789 167 0 0 chr9 62571402 62571812 -61504360 + (CA)n Simple_repeat Simple_repeat 1 410 0 1 1062 208 242 153 31 chr9 62572411 62572509 -61503663 + MIRc SINE MIR 58 167 -101 1 1062 201 292 77 22 chr9 62572762 62572853 -61503319 - MIRc SINE MIR -89 179 84 1 1062 492 68 0 0 chr9 62573661 62573734 -61502438 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1062 893 258 97 48 chr9 62573763 62574032 -61502140 - B4 SINE B4 -8 284 3 1 1062 1493 50 11 0 chr9 62574044 62574066 -61502106 - B2_Mm1a SINE B2 -8 185 162 1 1062 315 0 0 0 chr9 62574066 62574101 -61502071 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1062 1493 50 11 0 chr9 62574101 62574260 -61501912 - B2_Mm1a SINE B2 -32 161 3 1 1062 250 272 86 0 chr9 62574767 62574848 -61501324 - MLT1D LTR MaLR -140 365 278 1 1062 227 299 68 31 chr9 62574869 62575031 -61501141 - MLT1D LTR MaLR -283 222 55 1 1062 722 298 91 25 chr9 62575713 62575954 -61500218 + B4 SINE B4 30 286 -6 1 1062 206 309 137 0 chr9 62576312 62576436 -61499736 - MIRb SINE MIR -118 150 4 1 1062 738 34 0 0 chr9 62576528 62576617 -61499555 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1062 183 222 37 0 chr9 62577120 62577174 -61498998 + MIRc SINE MIR 75 130 -138 1 1062 731 240 88 5 chr9 62577241 62577446 -61498726 + ID_B1 SINE B4 3 224 0 1 1062 306 257 0 0 chr9 62577776 62577881 -61498291 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1062 347 41 0 20 chr9 62578685 62578735 -61497437 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1062 1347 72 0 0 chr9 62579006 62579186 -61496986 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1062 858 154 0 0 chr9 62579187 62579336 -61496836 + CT-rich Low_complexity Low_complexity 1 149 0 1 1062 1527 22 0 0 chr9 62579337 62579516 -61496656 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1062 1312 192 38 0 chr9 62580895 62581134 -61495038 + B4A SINE B4 10 257 -35 1 1062 300 91 0 0 chr9 62581135 62581179 -61494993 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1062 265 24 48 0 chr9 62581276 62581318 -61494854 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 2 1062 652 234 50 0 chr9 62581389 62581530 -61494642 - B1_Mur2 SINE Alu 0 149 2 2 1062 1146 200 54 0 chr9 62581538 62581743 -61494429 - B3 SINE B2 0 216 1 2 1062 492 182 0 0 chr9 62581854 62581986 -61494186 + GA-rich Low_complexity Low_complexity 2 133 0 2 1062 596 239 75 0 chr9 62581986 62582120 -61494052 + ID_B1 SINE B4 80 223 -1 2 1062 329 313 135 1 chr9 62582150 62582324 -61493848 - MIRb SINE MIR -44 224 16 2 1062 869 254 47 83 chr9 62582663 62582964 -61493208 + B4 SINE B4 1 290 -2 2 1062 226 324 76 29 chr9 62583727 62583832 -61492340 + PB1D9 SINE Alu 4 113 -7 2 1062 413 262 73 18 chr9 62583772 62583881 -61492291 + B4 SINE B4 160 274 -18 2 1062 1165 26 18 36 chr9 62583893 62584173 -61491999 + (CA)n Simple_repeat Simple_repeat 1 274 0 2 1062 1204 143 10 0 chr9 62584471 62584667 -61491505 + URR1A DNA MER1_type 29 226 0 2 1062 460 276 50 45 chr9 62584667 62584720 -61491452 - CYRA11_Mm Unknown Y-chromosome -445 172 119 2 1062 784 224 19 0 chr9 62584807 62584968 -61491204 - B4A SINE B4 -2 290 127 2 1062 270 0 0 0 chr9 62585326 62585356 -61490816 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1062 306 0 0 0 chr9 62585356 62585390 -61490782 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1062 2217 132 25 0 chr9 62585564 62585882 -61490290 + ORR1A3 LTR MaLR 1 326 0 2 1062 1931 141 111 3 chr9 62586078 62586419 -61489753 - ORR1C1 LTR MaLR 0 378 1 2 1062 413 331 128 14 chr9 62586659 62586947 -61489225 - MLT1G1 LTR MaLR -258 321 1 2 1062 530 223 18 0 chr9 62586972 62587084 -61489088 + ID_B1 SINE B4 2 115 -109 2 1062 243 298 0 0 chr9 62587086 62587143 -61489029 + ID4_ SINE ID 18 74 -9 2 1062 219 114 0 0 chr9 62587152 62587187 -61488985 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 2 1062 269 254 0 0 chr9 62588223 62588284 -61487888 - PB1D10 SINE Alu -5 115 55 2 1062 216 137 19 56 chr9 62588366 62588420 -61487752 + T-rich Low_complexity Low_complexity 2 53 0 2 1062 1013 221 53 10 chr9 62588816 62589022 -61487150 + B3 SINE B2 2 216 0 2 1062 264 120 0 0 chr9 62589043 62589093 -61487079 + (CAAG)n Simple_repeat Simple_repeat 2 51 0 2 1062 698 253 30 37 chr9 62589436 62589600 -61486572 - RSINE1 SINE B4 -1 164 2 2 1062 460 269 176 13 chr9 62590486 62590713 -61485459 + B4A SINE B4 3 266 -26 2 1062 450 125 0 0 chr9 62590716 62590796 -61485376 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1062 968 154 0 6 chr9 62590847 62591023 -61485149 + GA-rich Low_complexity Low_complexity 1 175 0 2 1062 272 279 54 62 chr9 62591032 62591162 -61485010 + MER5B DNA MER1_type 50 178 0 2 1062 689 255 147 46 chr9 62591277 62591536 -61484636 + B4A SINE B4 7 291 -1 2 1062 297 0 0 0 chr9 62592610 62592643 -61483529 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1062 610 210 238 28 chr9 62592875 62593056 -61483116 + ID_B1 SINE B4 5 223 -1 2 1062 969 177 13 4 chr9 62593795 62594033 -61482139 + CT-rich Low_complexity Low_complexity 1 239 0 2 1062 254 197 82 0 chr9 62595001 62595062 -61481110 - MTEa LTR MaLR -1 418 315 2 1062 218 195 0 24 chr9 62595062 62595104 -61481068 + G-rich Low_complexity Low_complexity 1 41 0 2 1062 1037 247 143 11 chr9 62595104 62595390 -61480782 - MTEa LTR MaLR -55 324 1 2 1062 266 277 15 0 chr9 62596127 62596192 -61479980 - MER20 DNA MER1_type -150 69 4 2 1062 2506 39 12 29 chr9 62596629 62596971 -61479201 + RLTR10B2 LTR ERVK 1 336 -29 2 1062 1104 90 7 0 chr9 62597000 62597145 -61479027 + B1_Mus2 SINE Alu 1 146 -1 2 1062 248 268 103 0 chr9 62597440 62597575 -61478597 + MIR SINE MIR 58 220 -48 2 1062 224 268 0 18 chr9 62597945 62598002 -61478170 + ID4_ SINE ID 22 77 -6 2 1062 297 0 0 0 chr9 62598022 62598055 -61478117 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 2 1062 521 254 79 0 chr9 62598055 62598181 -61477991 - ID_B1 SINE B4 -69 155 20 2 1062 805 276 98 0 chr9 62598202 62598448 -61477724 - B4 SINE B4 -22 270 1 2 1062 245 29 29 0 chr9 62599788 62599822 -61476350 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1062 216 366 12 0 chr9 62600855 62600937 -61475235 - MIR SINE MIR -91 117 35 2 1062 369 299 12 48 chr9 62601211 62601376 -61474796 + (CACCC)n Simple_repeat Simple_repeat 2 160 0 2 1062 1096 214 23 0 chr9 62601744 62601959 -61474213 - ID_B1 SINE B4 -4 220 1 2 1062 693 145 0 88 chr9 62601993 62602129 -61474043 + B1_Mur2 SINE Alu 1 124 -25 2 1062 235 9 4 0 chr9 62602272 62602309 -61473863 + B3A SINE B2 2 39 -156 2 1062 357 109 0 0 chr9 62602350 62602405 -61473767 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1062 409 298 145 0 chr9 62603991 62604115 -61472057 - B3 SINE B2 -48 168 27 2 1062 591 200 148 119 chr9 62604136 62604346 -61471826 - B3 SINE B2 0 216 1 2 1062 642 26 0 0 chr9 62604383 62604459 -61471713 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1062 246 273 61 0 chr9 62604488 62604554 -61471618 - PB1D9 SINE Alu -1 119 50 2 1062 279 0 0 0 chr9 62604562 62604593 -61471579 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1062 244 416 56 11 chr9 62604606 62604890 -61471282 - Lx8 LINE L1 -125 7348 7052 2 1062 289 341 0 0 chr9 62605010 62605092 -61471080 - ID2 SINE ID -1 82 1 2 1062 356 16 16 47 chr9 62605096 62605160 -61471012 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2 1062 245 329 71 24 chr9 62605168 62605252 -61470920 - B1F2 SINE Alu -61 88 1 2 1062 494 133 117 43 chr9 62605993 62606087 -61470085 - B1_Mur1 SINE Alu -28 121 21 2 1062 313 222 222 7 chr9 62606480 62606624 -61469548 - ID_B1 SINE B4 -46 178 4 2 1062 2267 123 0 30 chr9 62606815 62607151 -61469021 - ORR1A3 LTR MaLR 0 326 1 2 1062 943 182 106 30 chr9 62607535 62607733 -61468439 - B3 SINE B2 -3 213 1 2 1062 678 109 0 0 chr9 62607835 62607936 -61468236 + (TC)n Simple_repeat Simple_repeat 2 102 0 2 1062 363 73 0 0 chr9 62609993 62610048 -61466124 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 2 1062 315 200 28 14 chr9 62610152 62610211 -61465961 + PB1D10 SINE Alu 25 85 -32 2 1062 297 0 0 0 chr9 62610211 62610244 -61465928 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1062 315 200 28 14 chr9 62610244 62610255 -61465917 + PB1D10 SINE Alu 86 96 -21 2 1062 188 35 35 0 chr9 62610946 62610975 -61465197 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1062 1008 45 90 0 chr9 62610975 62611108 -61465064 - B1_Mus2 SINE Alu -2 145 1 2 1062 1070 217 5 24 chr9 62612145 62612357 -61463815 + ID_B1 SINE B4 1 208 -16 2 1062 189 200 35 35 chr9 62613778 62613835 -61462337 + MIR SINE MIR 70 126 -82 2 1062 708 249 89 11 chr9 62613926 62614117 -61462055 + ID_B1 SINE B4 1 206 -18 2 1062 550 227 55 0 chr9 62614140 62614250 -61461922 + PB1D9 SINE Alu 4 119 -1 2 1062 1152 180 5 43 chr9 62614266 62614475 -61461697 + B3 SINE B2 4 204 -12 2 1062 1178 62 14 0 chr9 62614535 62614681 -61461491 + B1_Mus1 SINE Alu 1 148 0 2 1062 683 248 48 0 chr9 62614777 62614902 -61461270 + RSINE1 SINE B4 2 132 -33 2 1062 254 191 0 21 chr9 62615067 62615115 -61461057 - L4 LINE RTE -197 1832 1786 2 1062 243 209 104 0 chr9 62615764 62615831 -61460341 - MTE2a LTR MaLR -191 188 115 2 1062 1044 131 191 0 chr9 62616548 62616731 -61459441 + ID_B1 SINE B4 5 222 -2 2 1062 683 186 14 0 chr9 62616731 62616876 -61459296 + GA-rich Low_complexity Low_complexity 1 147 0 2 1062 806 212 166 129 chr9 62617483 62617689 -61458483 - MTEa LTR MaLR 0 379 177 2 1062 2496 60 0 0 chr9 62617689 62618004 -61458168 - L1Md_A LINE L1 0 6582 6268 2 1062 806 212 166 129 chr9 62618004 62618122 -61458050 - MTEa LTR MaLR -203 176 43 2 1062 880 247 0 0 chr9 62619389 62619567 -61456605 + B3A SINE B2 3 180 -18 2 1062 995 39 118 0 chr9 62619599 62619726 -61456446 - B1_Mus1 SINE Alu -5 143 2 2 1062 483 18 0 0 chr9 62619839 62619895 -61456277 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1062 408 71 0 0 chr9 62619920 62619976 -61456196 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1062 513 227 159 72 chr9 62619979 62620174 -61455998 + ID_B1 SINE B4 5 216 -8 2 1062 318 67 0 0 chr9 62620181 62620226 -61455946 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 2 1062 363 167 0 0 chr9 62620228 62620294 -61455878 + GA-rich Low_complexity Low_complexity 3 68 0 2 1062 290 344 45 12 chr9 62620922 62621057 -61455115 + MIR3 SINE MIR 28 158 -50 2 1062 844 136 0 130 chr9 62621090 62621259 -61454913 + B1_Mus1 SINE Alu 2 148 0 2 1062 286 231 167 37 chr9 62621380 62621488 -61454684 - MLT1J LTR MaLR -196 316 195 2 1062 254 191 46 31 chr9 62622303 62622368 -61453804 + RSINE1 SINE B4 7 72 -93 2 1062 324 0 0 0 chr9 62622369 62622405 -61453767 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1062 282 73 0 0 chr9 62622427 62622468 -61453704 + (TCTCTG)n Simple_repeat Simple_repeat 4 44 0 2 1062 1222 68 0 0 chr9 62622579 62622727 -61453445 + B1_Mus1 SINE Alu 1 148 0 2 1062 306 0 0 0 chr9 62622727 62622761 -61453411 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1062 1549 62 0 10 chr9 62622777 62622971 -61453201 + B2_Mm2 SINE B2 1 192 -3 2 1062 1024 120 0 7 chr9 62623088 62623231 -61452941 - B1_Mur4 SINE Alu -6 144 3 2 1062 342 0 0 0 chr9 62623508 62623546 -61452626 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1062 687 203 33 80 chr9 62623549 62623699 -61452473 - RSINE1 SINE B4 -21 144 2 3 1062 198 0 0 0 chr9 62624023 62624045 -61452127 + (ATTG)n Simple_repeat Simple_repeat 1 22 0 3 1062 282 237 247 0 chr9 62624834 62624927 -61451245 + B4A SINE B4 109 224 -68 3 1062 290 87 22 0 chr9 62624948 62624994 -61451178 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1062 917 104 30 0 chr9 62626118 62626252 -61449920 - B1_Mur4 SINE Alu -7 143 6 3 1062 661 207 5 59 chr9 62626252 62626278 -61449894 - ID_B1 SINE B4 -1 192 70 3 1062 185 260 139 67 chr9 62627010 62627175 -61448997 - L2 LINE L2 -647 2772 2596 3 1062 323 39 62 25 chr9 62627465 62627545 -61448627 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 3 1062 1177 62 14 0 chr9 62627546 62627691 -61448481 - B1_Mm SINE Alu 0 147 1 3 1062 565 266 4 60 chr9 62627692 62627848 -61448324 - B3A SINE B2 0 216 67 3 1062 655 79 25 44 chr9 62627878 62628036 -61448136 + (TC)n Simple_repeat Simple_repeat 2 156 0 3 1062 638 196 49 35 chr9 62628092 62628235 -61447937 - B1_Mur3 SINE Alu 0 149 5 3 1062 232 361 37 9 chr9 62628271 62628380 -61447792 + B4 SINE B4 2 113 -179 3 1062 859 236 74 74 chr9 62628424 62628708 -61447464 + B4A SINE B4 2 285 -7 3 1062 1244 78 89 0 chr9 62628748 62628927 -61447245 + B2_Mm2 SINE B2 1 195 0 3 1062 1272 41 0 0 chr9 62628951 62629098 -61447074 + B1_Mus2 SINE Alu 1 147 0 3 1062 34 42 0 0 chr9 62629226 62629274 -61446898 + AT_rich Low_complexity Low_complexity 1 48 0 3 1062 261 267 53 0 chr9 62629277 62629352 -61446820 + ID_B1 SINE B4 146 224 0 3 1062 22 0 0 0 chr9 62630079 62630101 -61446071 + AT_rich Low_complexity Low_complexity 1 22 0 3 1062 480 35 0 0 chr9 62631359 62631417 -61444755 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1062 435 19 0 0 chr9 62632167 62632219 -61443953 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1062 404 246 13 147 chr9 62632672 62632829 -61443343 + ID_B1 SINE B4 87 222 -2 3 1062 966 182 0 0 chr9 62632835 62632983 -61443189 + B1_Mur2 SINE Alu 1 148 -1 3 1062 3668 36 15 33 chr9 62632988 62633444 -61442728 + L1_Mus1 LINE L1 6120 6567 0 3 1062 442 221 96 0 chr9 62633530 62633634 -61442538 + PB1D10 SINE Alu 4 117 0 3 1062 300 27 0 0 chr9 62633680 62633717 -61442455 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1062 181 185 227 15 chr9 62634155 62634221 -61441951 - L4 LINE RTE -250 1779 1700 3 1062 222 287 160 34 chr9 62635202 62635321 -61440851 + MIR SINE MIR 18 151 -57 3 1062 499 196 62 0 chr9 62635330 62635427 -61440745 + B3 SINE B2 4 106 -110 3 1062 1422 63 17 0 chr9 62635603 62635778 -61440394 + B2_Mm2 SINE B2 1 178 -17 3 1062 564 140 0 0 chr9 62635778 62635871 -61440301 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1062 191 114 29 0 chr9 62635892 62635927 -61440245 + (GGA)n Simple_repeat Simple_repeat 2 37 0 3 1062 736 240 115 16 chr9 62635955 62636137 -61440035 + ID_B1 SINE B4 5 204 -20 3 1062 588 263 62 9 chr9 62636269 62636438 -61439734 - B3 SINE B2 -42 174 1 3 1062 344 307 29 93 chr9 62636457 62636597 -61439575 + RSINE1 SINE B4 2 132 -33 3 1062 470 96 0 14 chr9 62636619 62636693 -61439479 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1062 1039 110 13 27 chr9 62636702 62636852 -61439320 - B1_Mus1 SINE Alu 0 148 1 3 1062 1483 63 21 0 chr9 62636866 62637057 -61439115 - B2_Mm2 SINE B2 0 195 1 3 1062 694 231 106 11 chr9 62637471 62637659 -61438513 + B3 SINE B2 1 206 -10 3 1062 338 319 108 58 chr9 62638273 62638418 -61437754 + L1M4b LINE L1 2001 2160 -5174 3 1062 1350 61 72 6 chr9 62638418 62638579 -61437593 + B2_Mm1t SINE B2 1 160 -33 3 1062 222 37 0 0 chr9 62638579 62638606 -61437566 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1062 1350 61 72 6 chr9 62638606 62638624 -61437548 + B2_Mm1t SINE B2 161 191 -2 3 1062 338 319 108 58 chr9 62638624 62638718 -61437454 + L1M4b LINE L1 2161 2252 -5082 3 1062 439 280 82 27 chr9 62638756 62638903 -61437269 + RSINE1 SINE B4 3 157 -8 3 1062 534 308 32 96 chr9 62645792 62646043 -61430129 + B4A SINE B4 3 237 -55 3 1062 1003 162 168 0 chr9 62646308 62646499 -61429673 + URR1B DNA MER1_type 3 225 0 3 1062 2125 172 70 70 chr9 62646578 62646980 -61429192 - RLTR12B LTR ERVK -27 501 95 3 1062 1047 83 13 52 chr9 62646980 62647133 -61429039 + B1_Mus2 SINE Alu 1 147 0 3 1062 2125 172 70 70 chr9 62647133 62647231 -61428941 - RLTR12B LTR ERVK -434 94 1 3 1062 1275 106 26 5 chr9 62647355 62647545 -61428627 + B2_Mm2 SINE B2 1 194 -1 3 1062 1136 82 7 0 chr9 62647557 62647704 -61428468 + B1_Mus1 SINE Alu 1 148 0 3 1062 458 245 109 38 chr9 62648277 62648528 -61427644 + MLT1A1 LTR MaLR 108 407 -1 3 1062 204 125 0 0 chr9 62648638 62648670 -61427502 + (G)n Simple_repeat Simple_repeat 1 32 0 3 1062 410 252 114 0 chr9 62648679 62648802 -61427370 - RSINE1 SINE B4 -28 137 1 3 1062 1076 37 73 15 chr9 62648863 62649000 -61427172 - B1_Mus2 SINE Alu 0 147 3 3 1062 3384 38 8 5 chr9 62649078 62649477 -61426695 + MTB LTR MaLR 1 400 0 3 1062 333 153 218 23 chr9 62649610 62649697 -61426475 + RLTR25B LTR ERVK 406 509 -519 3 1062 903 9 0 18 chr9 62649631 62649742 -61426430 + B1_Mm SINE Alu 39 147 0 3 1062 288 0 0 0 chr9 62649742 62649774 -61426398 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1062 1670 37 0 0 chr9 62649957 62650146 -61426026 - B2_Mm1a SINE B2 -3 190 2 3 1062 558 277 121 15 chr9 62650160 62650292 -61425880 - RSINE1 SINE B4 -12 153 8 3 1062 744 261 174 8 chr9 62650296 62650651 -61425521 - L1ME3 LINE L1 -60 6104 5691 3 1062 230 200 18 18 chr9 62650652 62650708 -61425464 - PB1D9 SINE Alu 0 120 65 3 1062 299 189 38 0 chr9 62650702 62650755 -61425417 - B3 SINE B2 -150 66 12 3 1062 1251 55 0 0 chr9 62650800 62650946 -61425226 + B1_Mus2 SINE Alu 1 146 -1 3 1062 1339 71 55 0 chr9 62650988 62651171 -61425001 + B2_Mm2 SINE B2 2 194 -1 3 1062 444 189 0 13 chr9 62651276 62651351 -61424821 - ID4_ SINE ID -9 74 1 3 1062 333 127 0 35 chr9 62651655 62651712 -61424460 - B2_Mm2 SINE B2 -94 101 47 3 1062 1292 80 23 6 chr9 62651740 62651916 -61424256 - B2_Mm1t SINE B2 -14 179 1 3 1062 247 348 30 24 chr9 62651928 62652093 -61424079 - L1ME3 LINE L1 -1603 4543 4378 3 1062 466 306 36 7 chr9 62652256 62652277 -61423895 - ID_B1 SINE B4 0 224 84 3 1062 548 216 54 8 chr9 62652277 62652393 -61423779 - B1F1 SINE Alu -5 112 3 3 1063 960 54 131 0 chr9 62652450 62652580 -61423592 + B2_Mm2 SINE B2 2 148 -47 3 1063 414 39 0 0 chr9 62652580 62652632 -61423540 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1063 272 313 145 0 chr9 62652656 62652739 -61423433 + PB1D10 SINE Alu 1 95 -22 3 1063 408 40 0 0 chr9 62652762 62652812 -61423360 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 3 1063 275 158 0 50 chr9 62652825 62652885 -61423287 - B1F1 SINE Alu 0 149 93 3 1063 498 33 0 0 chr9 62653108 62653168 -61423004 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1063 1312 106 11 5 chr9 62653229 62653419 -61422753 - B2_Mm1t SINE B2 -2 191 1 3 1063 611 236 66 61 chr9 62653495 62653693 -61422479 - B3 SINE B2 -17 199 1 3 1063 630 181 86 8 chr9 62653842 62653970 -61422202 + B1_Mur3 SINE Alu 10 147 -2 3 1063 1172 68 0 20 chr9 62653987 62654137 -61422035 + B1_Mus2 SINE Alu 1 147 0 3 1063 723 175 36 14 chr9 62654150 62654289 -61421883 - B1_Mur2 SINE Alu 0 149 8 3 1063 584 301 39 0 chr9 62654320 62654476 -61421696 - RSINE1 SINE B4 -1 164 3 3 1063 715 154 163 0 chr9 62654839 62654962 -61421210 - B1_Mus1 SINE Alu -4 144 2 3 1063 239 312 52 0 chr9 62655057 62655134 -61421038 + RSINE1 SINE B4 1 81 -84 3 1063 21 71 0 0 chr9 62655134 62655176 -61420996 + AT_rich Low_complexity Low_complexity 1 42 0 3 1063 1422 70 0 11 chr9 62655336 62655525 -61420647 + B2_Mm2 SINE B2 1 187 -8 3 1063 972 82 90 0 chr9 62655916 62656050 -61420122 + B1_Mm SINE Alu 2 147 0 3 1063 921 142 199 66 chr9 62656449 62656645 -61419527 - URR1A DNA MER1_type 0 226 5 3 1063 268 302 109 124 chr9 62656722 62656979 -61419193 + L2c LINE L2 3122 3374 -13 3 1063 543 206 114 8 chr9 62657093 62657225 -61418947 - B1_Mur1 SINE Alu -2 147 2 3 1063 195 69 0 0 chr9 62657663 62657692 -61418480 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1063 198 0 0 0 chr9 62657708 62657730 -61418442 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1063 327 256 129 6 chr9 62657731 62657820 -61418352 + PB1D10 SINE Alu 15 104 -13 3 1063 255 61 0 0 chr9 62657840 62657873 -61418299 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 3 1063 373 306 144 45 chr9 62660577 62660868 -61415304 - L2 LINE L2 -370 3049 2730 3 1063 409 246 103 71 chr9 62661013 62661197 -61414975 - B2_Mm2 SINE B2 -5 190 1 3 1063 1450 223 73 97 chr9 62661386 62661594 -61414578 + MTD LTR MaLR 3 210 -209 3 1063 1203 48 0 13 chr9 62661594 62661743 -61414429 + B1_Mm SINE Alu 1 147 0 3 1063 1450 223 73 97 chr9 62661743 62661947 -61414225 + MTD LTR MaLR 211 405 -14 3 1063 1319 30 38 77 chr9 62662025 62662208 -61413964 + B2_Mm1a SINE B2 3 178 -15 3 1063 249 33 0 0 chr9 62662209 62662239 -61413933 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1063 299 253 9 3 chr9 62663571 62663636 -61412536 + B1F SINE Alu 1 67 -50 3 1063 1297 67 0 0 chr9 62663784 62663948 -61412224 - B2_Mm2 SINE B2 -31 164 1 4 1063 247 330 124 49 chr9 62664210 62664395 -61411777 - MIR SINE MIR -29 233 35 4 1063 420 20 0 0 chr9 62664558 62664607 -61411565 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1063 241 348 14 75 chr9 62664839 62664985 -61411187 + MIR SINE MIR 24 160 -102 4 1063 276 231 38 25 chr9 62665065 62665145 -61411027 + MIR3 SINE MIR 121 201 -7 4 1063 227 286 104 9 chr9 62665276 62665382 -61410790 + MIRb SINE MIR 153 268 0 4 1063 503 200 21 0 chr9 62665433 62665528 -61410644 + PB1D10 SINE Alu 3 99 -18 4 1063 198 103 0 0 chr9 62665528 62665557 -61410615 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 1063 271 237 40 57 chr9 62665575 62665711 -61410461 + MIR SINE MIR 108 243 -25 4 1063 185 284 165 10 chr9 62665725 62665828 -61410344 - MIRb SINE MIR -122 146 28 4 1063 378 282 94 47 chr9 62666558 62666707 -61409465 + RSINE1 SINE B4 4 159 -6 4 1063 203 61 30 0 chr9 62666797 62666830 -61409342 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1063 1207 43 14 0 chr9 62666834 62666975 -61409197 - B1_Mus1 SINE Alu -5 143 1 4 1063 1129 36 0 28 chr9 62667109 62667253 -61408919 + B1_Mus1 SINE Alu 1 140 -8 4 1063 192 40 0 0 chr9 62667279 62667304 -61408868 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1063 240 245 0 0 chr9 62667424 62667477 -61408695 + C-rich Low_complexity Low_complexity 1 53 0 4 1063 570 222 55 68 chr9 62667501 62667698 -61408474 + MTE2a LTR MaLR 172 378 -1 4 1063 300 148 0 0 chr9 62667732 62667770 -61408402 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 4 1063 961 75 0 125 chr9 62667770 62667938 -61408234 - B1_Mus2 SINE Alu 0 147 1 4 1063 300 148 0 0 chr9 62667938 62667953 -61408219 + (TTTC)n Simple_repeat Simple_repeat 4 18 0 4 1063 255 237 131 33 chr9 62667989 62668111 -61408061 - B4 SINE B4 -158 134 1 4 1063 547 54 163 0 chr9 62668159 62668251 -61407921 - B1_Mus2 SINE Alu 0 147 41 4 1063 374 279 64 111 chr9 62668261 62668361 -61407811 + Tigger7 DNA MER2_type 2269 2344 -147 4 1063 798 244 39 19 chr9 62668361 62668566 -61407606 - B3 SINE B2 -6 210 2 4 1063 374 279 64 111 chr9 62668566 62668699 -61407473 + Tigger7 DNA MER2_type 2345 2491 0 4 1063 249 275 73 60 chr9 62669076 62669227 -61406945 + RMER15 LTR ERVL 423 575 0 4 1063 679 209 143 0 chr9 62669310 62669520 -61406652 + MTD LTR MaLR 150 389 -30 4 1063 1087 76 0 0 chr9 62669545 62669690 -61406482 - B1_Mus2 SINE Alu -2 145 1 4 1063 241 167 21 0 chr9 62669691 62669739 -61406433 + MTD LTR MaLR 363 411 -8 4 1063 661 213 18 72 chr9 62669743 62669910 -61406262 + B3A SINE B2 38 195 -3 4 1063 365 253 0 0 chr9 62669957 62670036 -61406136 + B1_Mur4 SINE Alu 9 87 -63 4 1063 405 146 0 14 chr9 62670301 62670389 -61405783 + B1_Mur1 SINE Alu 56 141 -8 4 1063 22 0 0 0 chr9 62670396 62670418 -61405754 + AT_rich Low_complexity Low_complexity 1 22 0 4 1063 1107 54 0 0 chr9 62670518 62670665 -61405507 + B1_Mus2 SINE Alu 1 147 0 4 1063 520 259 67 0 chr9 62671163 62671298 -61404874 - B1_Mur2 SINE Alu -5 144 1 4 1063 1147 61 0 0 chr9 62671305 62671452 -61404720 - B1_Mus2 SINE Alu 0 147 1 4 1063 1430 63 16 0 chr9 62671474 62671664 -61404508 - B2_Mm2 SINE B2 -2 193 1 4 1063 432 91 0 0 chr9 62671699 62671765 -61404407 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1063 457 260 181 0 chr9 62671782 62671909 -61404263 - RSINE1 SINE B4 -10 155 6 4 1063 303 273 17 76 chr9 62671924 62672043 -61404129 - PB1D10 SINE Alu -3 114 3 4 1063 289 240 35 138 chr9 62672209 62672265 -61403907 - Charlie4a DNA MER1_type -291 217 164 4 1063 1604 31 0 0 chr9 62672265 62672458 -61403714 - B2_Mm1t SINE B2 0 193 1 4 1063 289 240 35 138 chr9 62672458 62672496 -61403676 - Charlie4a DNA MER1_type -345 163 136 4 1063 180 0 0 0 chr9 62672496 62672516 -61403656 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1063 1102 75 0 0 chr9 62672516 62672657 -61403515 - B1_Mus2 SINE Alu 0 147 7 4 1063 289 240 35 138 chr9 62672657 62672739 -61403433 - Charlie4a DNA MER1_type -373 135 63 4 1063 674 203 14 7 chr9 62673078 62673217 -61402955 - B1_Mur4 SINE Alu -10 140 1 4 1063 1723 147 7 93 chr9 62673284 62673703 -61402469 + RMER17C LTR ERVK 1 383 -27 4 1063 1126 241 23 43 chr9 62673738 62674042 -61402130 + ORR1D2 LTR MaLR 73 370 0 4 1063 1427 120 152 30 chr9 62674048 62674410 -61401762 + RMER17C LTR ERVK 2 407 -3 4 1063 219 211 0 0 chr9 62674794 62674832 -61401340 + polypyrimidine Low_complexity Low_complexity 4 41 0 4 1063 32 0 0 0 chr9 62674837 62674869 -61401303 + AT_rich Low_complexity Low_complexity 1 32 0 4 1063 352 135 50 75 chr9 62674887 62674967 -61401205 + B3A SINE B2 6 83 -115 4 1063 531 118 0 0 chr9 62675008 62675093 -61401079 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1063 235 234 0 0 chr9 62675131 62675178 -61400994 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1063 457 216 108 0 chr9 62675423 62675534 -61400638 + B3A SINE B2 4 126 -72 4 1063 387 0 0 0 chr9 62675608 62675651 -61400521 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1063 342 0 0 0 chr9 62675704 62675742 -61400430 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1063 346 296 6 90 chr9 62676059 62676226 -61399946 + ID_B1 SINE B4 67 219 -5 4 1063 558 266 0 7 chr9 62676086 62676230 -61399942 + B1_Mur1 SINE Alu 6 148 -1 4 1063 249 33 0 0 chr9 62676456 62676486 -61399686 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1063 2775 58 37 0 chr9 62677009 62677391 -61398781 - MTA_Mm LTR MaLR 0 396 1 4 1063 956 66 73 7 chr9 62677411 62677548 -61398624 - B1_Mus1 SINE Alu 0 148 3 4 1063 2062 120 67 103 chr9 62677609 62677669 -61398503 + RLTR23 LTR ERV1 1 60 -370 4 1063 819 88 103 8 chr9 62677669 62677795 -61398377 + B1_Mus1 SINE Alu 1 138 -10 4 1063 2062 120 67 103 chr9 62677795 62678179 -61397993 + RLTR23 LTR ERV1 61 429 -1 4 1063 426 279 9 0 chr9 62678660 62678771 -61397401 + PB1D10 SINE Alu 6 117 0 4 1063 204 125 0 0 chr9 62678771 62678803 -61397369 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 4 1063 183 42 0 0 chr9 62678810 62678834 -61397338 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 4 1063 331 280 66 29 chr9 62679348 62679484 -61396688 + B1_Mus2 SINE Alu 1 141 -6 4 1063 196 85 20 41 chr9 62679669 62679718 -61396454 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 1063 1084 42 0 14 chr9 62679718 62679862 -61396310 - B1_Mus1 SINE Alu -1 147 6 4 1063 510 200 58 97 chr9 62679726 62679881 -61396291 - B4 SINE B4 -73 219 71 4 1063 648 130 0 0 chr9 62679891 62680006 -61396166 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1063 505 304 99 5 chr9 62680064 62680256 -61395916 + B3 SINE B2 5 214 -2 4 1063 845 34 17 8 chr9 62680261 62680380 -61395792 + B1_Mus1 SINE Alu 29 148 0 4 1063 535 230 63 8 chr9 62680413 62680529 -61395643 + B1_Mur1 SINE Alu 16 139 -10 4 1063 207 0 0 0 chr9 62680529 62680552 -61395620 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1063 328 280 30 10 chr9 62680567 62680668 -61395504 + ID_B1 SINE B4 81 183 -41 4 1063 936 38 181 64 chr9 62680692 62680863 -61395309 + B2_Mm1a SINE B2 3 193 0 4 1063 740 209 0 0 chr9 62680867 62681001 -61395171 + B1_Mur1 SINE Alu 11 144 -5 4 1063 692 276 120 16 chr9 62681030 62681288 -61394884 + B4A SINE B4 8 292 0 4 1063 3116 3 0 0 chr9 62681677 62682054 -61394118 + L1Md_A LINE L1 6226 6582 0 4 1063 1120 61 0 20 chr9 62682207 62682358 -61393814 - B1_Mus1 SINE Alu 0 148 1 4 1063 225 302 81 30 chr9 62682453 62682552 -61393620 - ID_B1 SINE B4 -36 188 85 4 1063 671 316 114 11 chr9 62682563 62682922 -61393250 - L1ME1 LINE L1 -2045 5950 5555 4 1063 235 188 30 141 chr9 62682940 62683039 -61393133 + MT2B2 LTR ERVL 153 240 -344 4 1063 586 176 12 139 chr9 62682950 62683122 -61393050 + B1_Mur4 SINE Alu 1 150 0 4 1063 588 121 0 0 chr9 62683127 62683218 -61392954 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1063 376 241 25 92 chr9 62684042 62684083 -61392089 + ID_B1 SINE B4 114 154 -70 4 1063 617 144 208 38 chr9 62684083 62684242 -61391930 + B2_Mm2 SINE B2 1 186 -9 4 1063 376 241 25 92 chr9 62684242 62684319 -61391853 + ID_B1 SINE B4 155 224 0 4 1063 805 236 173 4 chr9 62684618 62684844 -61391328 + B4A SINE B4 16 279 -13 4 1063 203 280 40 0 chr9 62684874 62684949 -61391223 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 1063 216 311 14 0 chr9 62685016 62685089 -61391083 - MIRc SINE MIR -40 168 92 4 1063 197 59 0 56 chr9 62686243 62686279 -61389893 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1063 404 263 0 69 chr9 62686381 62686569 -61389603 + C-rich Low_complexity Low_complexity 1 175 0 4 1063 226 271 0 0 chr9 62687157 62687205 -61388967 - MIRm SINE MIR -11 265 218 4 1063 326 118 27 0 chr9 62687303 62687364 -61388808 + PB1D9 SINE Alu 2 67 -80 4 1063 290 229 84 0 chr9 62687363 62687446 -61388726 + ID_B1 SINE B4 7 96 -128 4 1063 683 158 57 14 chr9 62688279 62688420 -61387752 - B1_Mus2 SINE Alu 0 147 1 4 1063 1173 47 0 0 chr9 62690192 62690340 -61385832 - B1_Mus1 SINE Alu 0 148 1 4 1063 195 42 0 0 chr9 62690343 62690367 -61385805 + (TTTTC)n Simple_repeat Simple_repeat 4 27 0 4 1063 667 150 37 22 chr9 62690368 62690504 -61385668 - B1_Mur4 SINE Alu -11 139 2 4 1063 606 116 1 2 chr9 62692012 62692111 -61384061 - B2_Mm2 SINE B2 -94 99 2 4 1063 346 239 155 36 chr9 62693145 62693317 -61382855 + L1_Mur3 LINE L1 4234 4411 -1469 4 1063 22 56 0 0 chr9 62693500 62693536 -61382636 + AT_rich Low_complexity Low_complexity 1 36 0 4 1063 254 135 0 37 chr9 62693874 62693928 -61382244 + CT-rich Low_complexity Low_complexity 3 54 0 4 1063 431 303 98 0 chr9 62693962 62694094 -61382078 + RSINE1 SINE B4 9 153 -12 5 1063 1369 81 16 0 chr9 62694124 62694309 -61381863 + B2_Mm2 SINE B2 2 189 -6 5 1063 379 237 113 0 chr9 62694992 62695089 -61381083 - ID_B1 SINE B4 -22 202 95 5 1063 425 202 62 31 chr9 62695165 62695262 -61380910 + PB1D10 SINE Alu 3 102 -15 5 1063 348 152 0 0 chr9 62696332 62696398 -61379774 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1063 934 31 110 0 chr9 62697117 62697244 -61378928 + B1_Mus2 SINE Alu 1 141 -6 5 1063 1332 80 27 0 chr9 62697745 62697932 -61378240 + B2_Mm2 SINE B2 4 195 0 5 1063 239 280 196 0 chr9 62697982 62698089 -61378083 - B1_Mur2 SINE Alu -21 128 1 5 1063 376 240 191 40 chr9 62698109 62698235 -61377937 - B1_Mus2 SINE Alu -2 145 1 5 1063 224 204 0 0 chr9 62700171 62700220 -61375952 + G-rich Low_complexity Low_complexity 1 49 0 5 1063 279 238 32 0 chr9 62700328 62700391 -61375781 - Arthur1C DNA Tip100 -1 362 298 5 1063 1086 68 0 7 chr9 62700400 62700547 -61375625 + B1_Mus1 SINE Alu 3 148 0 5 1063 924 282 24 59 chr9 62700586 62700661 -61375511 - B4 SINE B4 -11 281 215 5 1063 1497 57 5 0 chr9 62700661 62700853 -61375319 - B2_Mm1a SINE B2 0 193 1 5 1063 924 282 24 59 chr9 62700853 62701067 -61375105 - B4 SINE B4 -78 214 2 5 1063 691 232 73 29 chr9 62702067 62702271 -61373901 - ID_B1 SINE B4 -11 213 1 5 1063 484 279 23 8 chr9 62702672 62702802 -61373370 + ID_B1 SINE B4 93 224 0 5 1063 687 275 66 0 chr9 62702809 62702991 -61373181 + B3A SINE B2 5 198 0 5 1063 283 202 0 23 chr9 62702998 62703084 -61373088 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 1063 1145 107 83 0 chr9 62703084 62703253 -61372919 - B2_Mm2 SINE B2 -11 184 2 5 1063 928 81 72 14 chr9 62703284 62703422 -61372750 + B1_Mus2 SINE Alu 2 147 0 5 1063 1031 146 93 37 chr9 62703519 62703733 -61372439 + URR1A DNA MER1_type 1 226 0 5 1063 471 113 0 0 chr9 62705497 62705568 -61370604 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1063 512 298 43 22 chr9 62707090 62707275 -61368897 + B3A SINE B2 1 189 -9 5 1063 212 264 107 40 chr9 62707508 62707583 -61368589 + MIRc SINE MIR 98 177 -91 5 1063 369 0 0 0 chr9 62707773 62707814 -61368358 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1063 457 216 108 0 chr9 62708062 62708173 -61367999 + B3A SINE B2 4 126 -72 5 1063 215 270 58 39 chr9 62708208 62708312 -61367860 + RSINE1 SINE B4 25 130 -35 5 1063 1449 57 0 15 chr9 62708441 62708638 -61367534 + B2_Mm2 SINE B2 1 194 -1 5 1063 284 266 53 44 chr9 62709324 62709438 -61366734 + B3A SINE B2 83 197 -1 5 1063 416 230 184 9 chr9 62709524 62709638 -61366534 - RSINE1 SINE B4 0 165 32 5 1063 4270 14 2 0 chr9 62709638 62710130 -61366042 - MT2_Mm LTR ERVL 0 493 1 5 1063 301 0 0 0 chr9 62710130 62710168 -61366004 - MERVL-int LTR ERVL 0 5485 5448 5 1063 379 167 46 35 chr9 62710168 62710255 -61365917 - ORR1A3-int LTR MaLR -1323 640 553 5 1063 46464 16 0 0 chr9 62710255 62715614 -61360558 - MERVL-int LTR ERVL -125 5360 1 5 1063 4270 14 2 0 chr9 62715614 62716106 -61360066 - MT2_Mm LTR ERVL 0 493 1 5 1063 676 255 19 0 chr9 62716151 62716308 -61359864 - ID_B1 SINE B4 -2 222 63 5 1063 229 143 0 39 chr9 62716392 62716443 -61359729 + G-rich Low_complexity Low_complexity 1 49 0 5 1063 413 294 28 0 chr9 62716876 62716985 -61359187 - PB1D10 SINE Alu -5 112 1 5 1063 315 232 0 0 chr9 62717266 62717348 -61358824 + T-rich Low_complexity Low_complexity 1 82 0 5 1063 1154 62 0 0 chr9 62717348 62717493 -61358679 - B1_Mus1 SINE Alu 0 148 4 5 1063 1314 78 21 5 chr9 62717497 62717689 -61358483 - B2_Mm2 SINE B2 0 195 1 5 1063 355 238 241 95 chr9 62718377 62718572 -61357600 - MTE2a LTR MaLR -16 363 133 5 1063 2442 99 12 34 chr9 62718572 62718979 -61357193 + RMER10B LTR ERVL 1 398 0 5 1063 355 238 241 95 chr9 62718979 62719015 -61357157 - MTE2a LTR MaLR -247 132 98 5 1063 233 269 44 15 chr9 62719519 62719587 -61356585 - RMER30 DNA MER1_type -115 87 18 5 1063 566 258 64 78 chr9 62719604 62719685 -61356487 + B4A SINE B4 1 80 -212 5 1063 262 0 26 26 chr9 62719685 62719724 -61356448 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1063 566 258 64 78 chr9 62719724 62719924 -61356248 + B4A SINE B4 81 278 -14 5 1063 386 20 20 0 chr9 62721274 62721325 -61354847 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 5 1063 780 40 0 129 chr9 62721355 62721587 -61354585 + (TCTA)n Simple_repeat Simple_repeat 1 202 0 5 1063 483 221 19 19 chr9 62721590 62721696 -61354476 - PB1D9 SINE Alu -14 106 1 5 1063 479 186 128 30 chr9 62721747 62721880 -61354292 + B1_Mur3 SINE Alu 4 149 0 5 1063 686 250 35 18 chr9 62721905 62722076 -61354096 - B3A SINE B2 -24 174 1 5 1063 496 167 167 0 chr9 62722934 62723030 -61353142 + RSINE1 SINE B4 39 150 -15 5 1063 237 282 0 41 chr9 62723876 62723998 -61352174 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 1063 201 94 0 0 chr9 62724816 62724848 -61351324 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1063 660 264 127 0 chr9 62725315 62725512 -61350660 - ID_B1 SINE B4 0 224 3 5 1063 916 151 22 0 chr9 62725548 62725687 -61350485 - B1_Mur3 SINE Alu -5 144 3 5 1063 192 143 0 0 chr9 62727624 62727666 -61348506 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 5 1063 237 132 0 0 chr9 62728005 62728043 -61348129 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 5 1063 222 118 0 0 chr9 62728726 62728760 -61347412 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 5 1063 183 129 0 0 chr9 62729181 62729212 -61346960 + (CACG)n Simple_repeat Simple_repeat 4 34 0 5 1063 243 88 0 0 chr9 62729510 62729544 -61346628 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1063 23 0 0 0 chr9 62730652 62730675 -61345497 + AT_rich Low_complexity Low_complexity 1 23 0 5 1063 263 250 103 0 chr9 62730873 62730941 -61345231 - Lx8 LINE L1 -202 7271 7197 5 1063 391 304 47 20 chr9 62731300 62731448 -61344724 + RSINE1 SINE B4 5 156 -9 5 1063 546 194 19 120 chr9 62732752 62732830 -61343342 + B1_Mur1 SINE Alu 8 72 -77 5 1063 1394 73 72 17 chr9 62732830 62732988 -61343184 + B2_Mm1a SINE B2 1 158 -35 5 1063 283 23 45 0 chr9 62732988 62733032 -61343140 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 5 1063 1394 73 72 17 chr9 62733032 62733053 -61343119 + B2_Mm1a SINE B2 159 190 -3 5 1063 546 194 19 120 chr9 62733053 62733132 -61343040 + B1_Mur1 SINE Alu 73 149 0 5 1063 270 106 0 0 chr9 62733140 62733187 -61342985 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1063 450 321 122 11 chr9 62733318 62733357 -61342815 - ID_B1 SINE B4 -13 211 157 5 1063 1446 90 11 11 chr9 62733357 62733548 -61342624 - B2_Mm1t SINE B2 -2 191 1 5 1063 450 321 122 11 chr9 62733548 62733697 -61342475 - ID_B1 SINE B4 -68 156 2 5 1063 244 328 0 0 chr9 62733884 62733945 -61342227 + B1F2 SINE Alu 2 62 -87 5 1063 329 203 29 0 chr9 62734362 62734431 -61341741 + PB1D9 SINE Alu 50 120 0 5 1063 703 262 40 0 chr9 62734508 62734657 -61341515 + RSINE1 SINE B4 5 159 -6 5 1063 516 280 0 39 chr9 62734659 62734789 -61341383 + B1F2 SINE Alu 12 136 -13 5 1063 499 70 0 14 chr9 62735425 62735497 -61340675 + L1Md_F2 LINE L1 6500 6570 -12 5 1063 1375 167 297 9 chr9 62735746 62736073 -61340099 + MTC LTR MaLR 1 421 0 5 1063 1007 74 51 15 chr9 62736404 62736541 -61339631 + B1_Mur4 SINE Alu 1 142 -8 5 1063 180 0 0 0 chr9 62736557 62736577 -61339595 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 5 1063 293 372 103 0 chr9 62736876 62737032 -61339140 - B4 SINE B4 -114 178 7 5 1063 203 188 0 20 chr9 62738798 62738847 -61337325 + C-rich Low_complexity Low_complexity 3 50 0 5 1063 235 328 0 0 chr9 62738866 62738933 -61337239 - PB1D9 SINE Alu -6 114 48 5 1063 315 323 129 0 chr9 62738939 62739032 -61337140 + RSINE1 SINE B4 32 136 -29 5 1063 315 194 38 28 chr9 62739032 62739138 -61337034 + A-rich Low_complexity Low_complexity 3 109 0 5 1063 550 218 120 8 chr9 62739211 62739336 -61336836 - B3A SINE B2 -33 165 27 5 1063 189 0 0 0 chr9 62739336 62739357 -61336815 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1063 1229 64 0 0 chr9 62739536 62739692 -61336480 - B2_Mm2 SINE B2 -39 156 1 5 1063 229 175 0 0 chr9 62739693 62739733 -61336439 - B3A SINE B2 -158 40 1 5 1063 659 146 9 28 chr9 62740333 62740439 -61335733 + B1_Mur2 SINE Alu 19 122 -27 5 1063 330 267 0 0 chr9 62740603 62740663 -61335509 + B1_Mus2 SINE Alu 1 60 -87 5 1063 236 204 0 0 chr9 62740687 62740736 -61335436 + A-rich Low_complexity Low_complexity 1 49 0 5 1063 610 284 7 7 chr9 62741283 62741418 -61334754 - RSINE1 SINE B4 -2 163 29 5 1063 1343 91 40 0 chr9 62741657 62741832 -61334340 + B2_Mm2 SINE B2 4 185 -10 5 1063 342 262 285 21 chr9 62742650 62742794 -61333378 - B3A SINE B2 -12 186 5 5 1063 189 107 0 0 chr9 62742804 62742832 -61333340 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 5 1063 324 0 0 0 chr9 62742917 62742953 -61333219 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1063 1289 48 12 24 chr9 62743091 62743249 -61332923 + B2_Mm2 SINE B2 2 160 -35 5 1063 180 0 0 0 chr9 62743249 62743269 -61332903 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 5 1063 1289 48 12 24 chr9 62743269 62743280 -61332892 + B2_Mm2 SINE B2 161 169 -26 5 1063 1421 227 70 44 chr9 62743909 62744289 -61331883 + Lx9 LINE L1 7085 7515 -129 5 1063 254 29 29 0 chr9 62744289 62744324 -61331848 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1063 341 226 89 15 chr9 62744324 62744442 -61331730 + Lx9 LINE L1 7516 7643 -1 5 1063 295 248 19 0 chr9 62744590 62744655 -61331517 - ID2 SINE ID -15 68 2 5 1063 604 143 27 0 chr9 62745459 62745571 -61330601 - Lx2A1 LINE L1 -5 7003 6889 5 1063 1433 35 92 0 chr9 62745586 62745760 -61330412 - L1_Mus1 LINE L1 -2 6565 6376 5 1063 666 112 20 0 chr9 62745760 62745858 -61330314 - PB1D9 SINE Alu -9 111 12 5 1063 472 250 177 21 chr9 62746463 62746655 -61329517 + ID_B1 SINE B4 1 222 -2 5 1063 1813 21 0 0 chr9 62748869 62749061 -61327111 - B2_Mm1t SINE B2 0 193 2 5 1063 1311 41 0 0 chr9 62749072 62749218 -61326954 - B1_Mus2 SINE Alu 0 147 2 6 1063 207 100 0 0 chr9 62749490 62749520 -61326652 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 6 1063 469 193 8 107 chr9 62749702 62749824 -61326348 - PB1D10 SINE Alu -5 112 3 6 1063 351 0 0 0 chr9 62749827 62749866 -61326306 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1063 241 229 209 8 chr9 62749911 62750021 -61326151 - B1_Mur3 SINE Alu 0 117 1 6 1063 1021 16 0 8 chr9 62750066 62750194 -61325978 - B1_Mus2 SINE Alu 0 147 21 6 1063 1688 125 121 10 chr9 62751369 62751675 -61324497 + ORR1C2 LTR MaLR 45 384 0 6 1063 754 134 195 0 chr9 62752120 62752269 -61323903 + B2_Mm2 SINE B2 1 178 -17 6 1063 394 216 38 45 chr9 62752519 62752643 -61323529 + B1F SINE Alu 1 149 0 6 1063 522 252 67 92 chr9 62752836 62753076 -61323096 + MLT2B3 LTR ERVL 321 554 0 6 1063 1434 75 26 11 chr9 62753429 62753618 -61322554 - B2_Mm1t SINE B2 -1 192 1 6 1063 593 90 440 0 chr9 62754253 62754353 -61321819 - B1_Mus2 SINE Alu -3 144 1 6 1063 274 256 173 48 chr9 62754521 62754689 -61321483 - L1MD LINE L1 -1529 4617 4429 6 1063 636 266 81 42 chr9 62754860 62755119 -61321053 - L1MC LINE L1 -1967 4179 3911 6 1063 574 102 34 0 chr9 62755120 62755208 -61320964 + B1_Mur4 SINE Alu 60 150 0 6 1063 294 289 26 39 chr9 62755285 62755426 -61320746 + L1M4 LINE L1 4807 4948 -1198 6 1063 309 253 68 11 chr9 62755605 62755693 -61320479 - MER3 DNA MER1_type -49 160 68 6 1063 231 36 0 0 chr9 62756242 62756270 -61319902 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 6 1063 368 189 149 19 chr9 62756740 62756856 -61319316 - PB1D9 SINE Alu -23 126 2 6 1063 446 282 24 55 chr9 62757293 62757458 -61318714 + RSINE1 SINE B4 4 163 -2 6 1063 218 333 63 20 chr9 62757810 62757977 -61318195 + L2b LINE L2 3175 3323 -52 6 1063 1431 71 16 16 chr9 62758265 62758451 -61317721 - B2_Mm1t SINE B2 -7 186 1 6 1063 948 163 0 45 chr9 62758566 62758720 -61317452 - B1_Mur3 SINE Alu -1 148 2 6 1063 428 245 14 0 chr9 62759286 62759374 -61316798 - PB1 SINE Alu -49 78 1 6 1063 307 308 0 13 chr9 62759303 62759382 -61316790 - B4A SINE B4 -137 155 78 6 1063 380 204 118 0 chr9 62759658 62759751 -61316421 + PB1D7 SINE Alu 5 111 -38 6 1063 188 321 35 12 chr9 62759996 62760081 -61316091 - MIR3 SINE MIR -37 171 85 6 1063 279 299 173 34 chr9 62760743 62760842 -61315330 - MIRb SINE MIR -6 262 142 6 1063 423 0 0 0 chr9 62760842 62760889 -61315283 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1063 279 299 173 34 chr9 62760889 62760997 -61315175 - MIRb SINE MIR -127 141 27 6 1063 181 306 115 50 chr9 62761504 62761686 -61314486 - MIRc SINE MIR -24 244 51 6 1063 333 118 0 0 chr9 62761797 62761848 -61314324 + (CCCA)n Simple_repeat Simple_repeat 2 52 0 6 1063 242 288 30 0 chr9 62761850 62761916 -61314256 - ID4_ SINE ID -12 71 4 6 1063 270 0 0 0 chr9 62762295 62762325 -61313847 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1063 353 298 8 90 chr9 62762904 62763037 -61313135 - PB1 SINE Alu -3 124 3 6 1063 1116 143 16 32 chr9 62763173 62763361 -61312811 - B2_Mm2 SINE B2 -10 185 1 6 1063 280 128 0 0 chr9 62763390 62763429 -61312743 + B1_Mus1 SINE Alu 1 39 -109 6 1063 476 335 23 92 chr9 62763685 62763859 -61312313 - ID_B1 SINE B4 -61 163 2 6 1063 719 227 50 0 chr9 62763948 62764089 -61312083 + B1_Mur1 SINE Alu 2 149 0 6 1063 26 0 0 0 chr9 62766079 62766105 -61310067 + AT_rich Low_complexity Low_complexity 1 26 0 6 1063 335 310 180 15 chr9 62766731 62767003 -61309169 + L1ME4a LINE L1 5553 5869 -255 6 1063 189 0 0 0 chr9 62767345 62767366 -61308806 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 6 1063 627 45 22 0 chr9 62767500 62767589 -61308583 - L1_Mus3 LINE L1 -2 6636 6546 6 1063 1760 27 0 0 chr9 62767645 62767833 -61308339 - B2_Mm1t SINE B2 -4 189 2 6 1063 719 272 96 38 chr9 62768521 62768865 -61307307 + Tigger2b DNA MER2_type 2 365 -361 6 1063 466 217 170 7 chr9 62769123 62769265 -61306907 + Tigger2b DNA MER2_type 502 667 -59 6 1063 484 257 10 0 chr9 62769265 62769366 -61306806 + PB1D9 SINE Alu 2 103 -17 6 1063 181 155 187 53 chr9 62769557 62769632 -61306540 + L4 LINE RTE 1724 1808 -221 6 1063 1113 180 5 16 chr9 62769711 62769903 -61306269 - Lx9 LINE L1 -168 7476 7287 6 1063 670 166 319 0 chr9 62770347 62770510 -61305662 + B3 SINE B2 2 216 0 6 1063 24 0 0 0 chr9 62771014 62771038 -61305134 + AT_rich Low_complexity Low_complexity 1 24 0 6 1063 399 214 80 80 chr9 62771866 62771978 -61304194 - PB1D10 SINE Alu -2 115 4 6 1063 397 240 73 55 chr9 62772258 62772368 -61303804 + B4A SINE B4 155 266 -26 6 1063 294 73 0 0 chr9 62772372 62772413 -61303759 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1063 636 281 109 15 chr9 62772477 62772679 -61303493 + ID_B1 SINE B4 3 223 -1 6 1063 601 188 27 113 chr9 62774124 62774274 -61301898 - B1_Mur3 SINE Alu -6 143 7 6 1063 279 233 0 16 chr9 62774222 62774283 -61301889 - B4A SINE B4 -150 142 83 6 1063 848 267 52 36 chr9 62774562 62774811 -61301361 - B4A SINE B4 -1 291 39 6 1063 807 233 62 0 chr9 62774969 62775145 -61301027 + B3A SINE B2 1 187 -11 6 1063 1681 182 120 31 chr9 62775183 62775540 -61300632 - Lx5 LINE L1 -3 7047 6659 6 1063 263 239 90 74 chr9 62775540 62775662 -61300510 - RMER4B LTR ERVK -2 583 460 6 1063 372 43 0 0 chr9 62775662 62775708 -61300464 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 6 1063 1596 77 0 5 chr9 62776391 62776586 -61299586 - B2_Mm2 SINE B2 0 195 2 6 1063 469 224 31 0 chr9 62776944 62777042 -61299130 + PB1D9 SINE Alu 2 102 -18 6 1063 699 142 17 26 chr9 62777061 62777177 -61298995 + B1_Mus1 SINE Alu 34 148 0 6 1063 1397 105 21 10 chr9 62777208 62777401 -61298771 + B2_Mm2 SINE B2 1 195 0 6 1063 225 256 0 0 chr9 62777558 62777601 -61298571 + PB1D10 SINE Alu 51 93 -24 6 1063 243 146 0 0 chr9 62777648 62777689 -61298483 + (GGGAGA)n Simple_repeat Simple_repeat 2 42 0 6 1063 920 268 74 42 chr9 62777936 62778407 -61297765 + L1MB4 LINE L1 4790 5275 -871 6 1063 336 300 54 9 chr9 62778413 62778524 -61297648 + PB1D10 SINE Alu 1 116 -1 6 1063 445 287 17 46 chr9 62778561 62778773 -61297399 + B4 SINE B4 3 255 -37 6 1063 378 59 0 68 chr9 62778775 62778848 -61297324 + (GGGGA)n Simple_repeat Simple_repeat 1 68 0 6 1063 961 285 118 83 chr9 62778849 62779001 -61297171 + L1MB4 LINE L1 5313 5474 -706 6 1063 546 16 0 0 chr9 62779001 62779064 -61297108 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 6 1063 961 285 118 83 chr9 62779064 62779572 -61296600 + L1MB4 LINE L1 5475 5996 -184 6 1063 307 196 17 51 chr9 62780035 62780094 -61296078 + RSINE1 SINE B4 4 60 -105 6 1063 473 240 143 8 chr9 62781191 62781317 -61294855 + B1F1 SINE Alu 2 144 -5 6 1063 745 270 52 33 chr9 62781416 62781627 -61294545 - ID_B1 SINE B4 -5 219 5 6 1063 1067 201 9 64 chr9 62781710 62781928 -61294244 + B3 SINE B2 3 208 -8 6 1063 754 176 79 8 chr9 62781971 62782097 -61294075 + B1_Mus1 SINE Alu 3 137 -11 6 1063 460 139 0 48 chr9 62782911 62782994 -61293178 + ID_B1 SINE B4 134 212 -12 6 1063 236 357 12 12 chr9 62783219 62783304 -61292868 + RSINE1 SINE B4 2 86 -79 6 1063 1066 120 13 6 chr9 62783228 62783387 -61292785 + B2_Mm2 SINE B2 11 170 -25 6 132 392 82 336 52 chr9 62783474 62783590 -61292582 + B2_Mm2 SINE B2 47 195 0 6 1064 458 304 37 37 chr9 62783953 62784117 -61292055 - RSINE1 SINE B4 0 165 2 6 1064 189 289 104 32 chr9 62784217 62784342 -61291830 + L2 LINE L2 1678 1811 -1608 6 1064 371 331 143 52 chr9 62784606 62784858 -61291314 + MLT1K LTR MaLR 157 431 -164 6 1064 269 292 64 28 chr9 62784868 62784977 -61291195 - L2a LINE L2 -4 3422 3310 6 1064 236 313 0 29 chr9 62785045 62785114 -61291058 - L2a LINE L2 -294 3132 3066 6 1064 381 215 10 51 chr9 62785215 62785313 -61290859 + PB1D10 SINE Alu 23 116 -1 6 1064 289 309 216 11 chr9 62785386 62785576 -61290596 - L2a LINE L2 -580 2839 2611 6 1064 219 175 52 17 chr9 62785779 62785837 -61290335 + GA-rich Low_complexity Low_complexity 4 63 0 6 1064 180 143 0 0 chr9 62786448 62786490 -61289682 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1064 549 288 22 0 chr9 62786490 62786629 -61289543 - ID_B1 SINE B4 0 224 83 6 1064 853 268 14 9 chr9 62786677 62786888 -61289284 + B3 SINE B2 1 212 -4 6 1064 908 203 67 38 chr9 62786924 62787134 -61289038 + B3 SINE B2 1 216 0 6 1064 493 269 14 41 chr9 62787168 62787315 -61288857 + B1F1 SINE Alu 5 147 -2 6 1064 271 341 0 0 chr9 62787492 62787574 -61288598 - ID2 SINE ID 0 83 2 6 1064 349 179 294 12 chr9 62787588 62787673 -61288499 - PB1D10 SINE Alu -8 109 1 6 1064 542 140 125 50 chr9 62787733 62787853 -61288319 - B1_Mur4 SINE Alu -1 149 21 6 1064 388 325 58 33 chr9 62787823 62787944 -61288228 + RSINE1 SINE B4 5 128 -37 6 1064 1664 162 178 26 chr9 62788279 62788621 -61287551 + ORR1B1 LTR MaLR 1 394 0 6 1064 420 67 0 0 chr9 62788734 62788794 -61287378 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1064 304 286 98 11 chr9 62788811 62788903 -61287269 + PB1D10 SINE Alu 1 100 -17 6 1064 1434 229 55 35 chr9 62788977 62789208 -61286964 + ORR1D1 LTR MaLR 1 234 -140 6 1064 216 0 0 0 chr9 62789208 62789232 -61286940 + (CCTG)n Simple_repeat Simple_repeat 1 24 0 6 1064 1434 229 55 35 chr9 62789232 62789367 -61286805 + ORR1D1 LTR MaLR 235 374 0 6 1064 351 0 0 0 chr9 62789701 62789740 -61286432 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1064 403 211 216 45 chr9 62790043 62790177 -61285995 + Lx8 LINE L1 6218 6374 -1099 7 1064 257 267 85 17 chr9 62790194 62790312 -61285860 + L1M5 LINE L1 5559 5684 -495 7 1064 212 146 98 59 chr9 62790515 62790566 -61285606 - PB1D10 SINE Alu 0 117 65 7 1064 527 206 29 10 chr9 62790567 62790670 -61285502 - ID_B1 SINE B4 -109 115 11 7 1064 285 246 0 55 chr9 62790609 62790682 -61285490 - BC1_Mm scRNA scRNA -82 70 2 7 1064 1293 28 14 0 chr9 62791141 62791286 -61284886 + B1_Mus2 SINE Alu 1 147 0 7 1064 207 69 0 0 chr9 62791292 62791321 -61284851 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 1064 1242 47 0 20 chr9 62791611 62791762 -61284410 - B1_Mus1 SINE Alu 0 148 1 7 1064 228 289 62 62 chr9 62791987 62791998 -61284174 + B1F SINE Alu 2 97 -52 7 1064 258 288 12 59 chr9 62791998 62792083 -61284089 + ID_B1 SINE B4 95 175 -49 7 1064 426 333 19 0 chr9 62792106 62792211 -61283961 + B1F SINE Alu 11 117 -32 7 1064 525 309 36 14 chr9 62792392 62792530 -61283642 - ID_B1 SINE B4 0 224 84 7 1064 1038 244 49 0 chr9 62792557 62792762 -61283410 - B3 SINE B2 0 216 2 7 1064 1025 145 7 0 chr9 62793485 62793630 -61282542 - B1_Mus2 SINE Alu -1 146 1 7 1064 685 162 0 8 chr9 62793851 62793969 -61282203 + B3 SINE B2 14 130 -86 7 1064 246 62 0 0 chr9 62793971 62794003 -61282169 + (TAG)n Simple_repeat Simple_repeat 1 32 0 7 1064 833 144 35 14 chr9 62794030 62794171 -61282001 - B1_Mur4 SINE Alu 0 150 7 7 1064 647 271 144 10 chr9 62794241 62794435 -61281737 + ID_B1 SINE B4 1 220 -4 7 1064 2284 116 0 71 chr9 62794627 62794981 -61281191 + ORR1A4 LTR MaLR 1 329 0 7 1064 566 209 174 0 chr9 62795358 62795473 -61280699 + B1_Mur1 SINE Alu 2 136 -13 7 1064 299 268 236 70 chr9 62795777 62796018 -61280154 + MER82 DNA MER2_type 2 282 -371 7 1064 276 30 0 0 chr9 62796181 62796214 -61279958 + (GGGGA)n Simple_repeat Simple_repeat 3 35 0 7 1064 195 42 0 0 chr9 62796359 62796383 -61279789 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1064 315 306 36 18 chr9 62796466 62796576 -61279596 - MER58C DNA MER1_type 0 215 104 7 1064 333 279 47 0 chr9 62796587 62796673 -61279499 - RSINE1 SINE B4 -17 148 59 7 1064 900 138 0 0 chr9 62796760 62796890 -61279282 + B3 SINE B2 2 131 -85 7 1064 36 0 0 0 chr9 62796903 62796939 -61279233 + AT_rich Low_complexity Low_complexity 1 36 0 7 1064 954 185 106 15 chr9 62796939 62797137 -61279035 + B3 SINE B2 1 216 0 7 1064 844 162 13 39 chr9 62797154 62797308 -61278864 - B1_Mur4 SINE Alu 0 150 1 7 1064 23 0 0 0 chr9 62797316 62797339 -61278833 + AT_rich Low_complexity Low_complexity 1 23 0 7 1064 290 315 146 0 chr9 62797361 62797450 -61278722 + RSINE1 SINE B4 4 105 -60 7 1064 588 264 88 16 chr9 62797618 62797810 -61278362 + Lx8 LINE L1 7266 7471 -2 7 1064 385 276 36 102 chr9 62797847 62797909 -61278263 + ID_B1 SINE B4 91 147 -77 7 1064 1239 112 73 0 chr9 62797909 62798087 -61278085 + B2_Mm2 SINE B2 3 193 -2 7 1064 385 276 36 102 chr9 62798087 62798161 -61278011 + ID_B1 SINE B4 148 218 -6 7 1064 243 250 43 14 chr9 62798242 62798311 -61277861 - MER58B DNA MER1_type 0 341 271 7 1064 372 100 36 48 chr9 62798526 62798592 -61277580 + T-rich Low_complexity Low_complexity 19 84 0 7 1064 231 36 0 0 chr9 62798592 62798620 -61277552 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 7 1064 372 100 36 48 chr9 62798620 62798637 -61277535 + T-rich Low_complexity Low_complexity 2 18 0 7 1064 782 78 250 0 chr9 62798638 62798754 -61277418 - B1_Mus1 SINE Alu 0 148 4 7 1064 464 234 91 30 chr9 62799221 62799353 -61276819 + B1_Mur3 SINE Alu 1 140 -9 7 1064 1081 171 60 91 chr9 62800943 62801175 -61274997 - URR1B DNA MER1_type 0 225 1 7 1064 552 176 156 25 chr9 62801840 62801962 -61274210 + B1F2 SINE Alu 2 139 -10 7 1064 618 254 28 90 chr9 62802104 62802316 -61273856 - B3 SINE B2 -17 199 1 7 1064 374 265 10 30 chr9 62802358 62802459 -61273713 + PB1D10 SINE Alu 19 117 0 7 1064 1405 227 105 3 chr9 62802508 62802831 -61273341 - ORR1D2 LTR MaLR -13 357 2 7 1064 1347 236 48 54 chr9 62802862 62803216 -61272956 - MTE2b LTR MaLR -25 354 3 7 1064 752 221 56 126 chr9 62804395 62804578 -61271594 - B3A SINE B2 -6 189 20 7 1064 834 51 254 0 chr9 62804588 62804706 -61271466 - B1_Mus1 SINE Alu 0 148 1 7 1064 23 33 0 0 chr9 62804717 62804747 -61271425 + AT_rich Low_complexity Low_complexity 1 30 0 7 1064 1042 196 77 0 chr9 62804751 62804945 -61271227 - B3 SINE B2 -6 210 2 7 1064 322 279 110 91 chr9 62805135 62805344 -61270828 - HAL1 LINE L1 -328 2179 1967 7 1064 438 281 48 32 chr9 62805440 62805565 -61270607 - B1F SINE Alu 0 149 23 7 1064 292 320 116 10 chr9 62805608 62805807 -61270365 - HAL1 LINE L1 -630 1877 1658 7 1064 1140 82 0 27 chr9 62805818 62805968 -61270204 - B1_Mm SINE Alu 0 147 2 7 1064 907 246 40 0 chr9 62806049 62806248 -61269924 + B3 SINE B2 2 208 -8 7 1064 21 36 0 0 chr9 62806257 62806285 -61269887 + AT_rich Low_complexity Low_complexity 1 28 0 7 1064 528 227 0 9 chr9 62806310 62806421 -61269751 + ID_B1 SINE B4 110 219 -5 7 1064 254 304 64 49 chr9 62806429 62806633 -61269539 - HAL1 LINE L1 -1005 1502 1296 7 1064 234 0 0 0 chr9 62806797 62806823 -61269349 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1064 1348 89 50 0 chr9 62806936 62807115 -61269057 + B2_Mm2 SINE B2 1 188 -7 7 1064 392 262 46 69 chr9 62807358 62807489 -61268683 + B1F2 SINE Alu 1 128 -21 7 1064 21 82 0 0 chr9 62807528 62807577 -61268595 + AT_rich Low_complexity Low_complexity 1 49 0 7 1064 405 226 38 38 chr9 62807670 62807776 -61268396 + B1F SINE Alu 42 147 -2 7 1064 231 112 35 81 chr9 62807781 62807868 -61268304 + GA-rich Low_complexity Low_complexity 4 86 0 7 1064 669 266 38 12 chr9 62808783 62808943 -61267229 + RSINE1 SINE B4 2 165 0 7 1064 300 27 0 0 chr9 62808961 62808998 -61267174 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1064 198 0 0 0 chr9 62808998 62809019 -61267153 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1064 381 265 102 0 chr9 62809024 62809122 -61267050 + PB1D10 SINE Alu 2 109 -8 7 1064 757 213 27 20 chr9 62809339 62809529 -61266643 + B3 SINE B2 1 191 -4 7 1064 1426 62 17 22 chr9 62809678 62809859 -61266313 + B2_Mm1t SINE B2 1 180 -13 7 1064 419 131 162 0 chr9 62809917 62810018 -61266154 + B2_Mm2 SINE B2 47 184 -9 7 1064 1115 167 0 31 chr9 62810466 62810658 -61265514 + B3 SINE B2 1 186 -30 7 1064 234 0 0 0 chr9 62810689 62810715 -61265457 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1064 399 41 0 0 chr9 62810715 62810764 -61265408 + (GGGGA)n Simple_repeat Simple_repeat 3 51 0 7 1064 333 0 0 0 chr9 62810764 62810801 -61265371 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1064 543 66 0 0 chr9 62811157 62811233 -61264939 + (CA)n Simple_repeat Simple_repeat 2 77 0 7 1064 948 221 70 39 chr9 62812085 62812415 -61263757 + L1MA4 LINE L1 5593 5932 -368 7 1064 314 315 125 8 chr9 62812783 62812910 -61263262 - B4A SINE B4 -22 270 129 7 1064 2805 169 40 51 chr9 62812910 62813483 -61262689 - RMER15 LTR ERVL 0 575 9 7 1064 464 286 23 31 chr9 62813500 62813630 -61262542 - B4A SINE B4 -163 129 1 7 1064 25 0 0 0 chr9 62813640 62813665 -61262507 + AT_rich Low_complexity Low_complexity 1 25 0 7 1064 255 31 0 0 chr9 62813666 62813698 -61262474 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 7 1064 1230 75 0 0 chr9 62813699 62813858 -61262314 - B2_Mm2 SINE B2 -35 160 2 7 1064 822 204 185 6 chr9 62813868 62814041 -61262131 - B3 SINE B2 -10 206 3 7 1064 557 268 27 0 chr9 62814140 62814252 -61261920 - B1F SINE Alu -34 115 1 7 1064 542 168 48 77 chr9 62815023 62815230 -61260942 + RMER17C LTR ERVK 73 273 -137 7 1064 269 109 0 21 chr9 62815250 62815297 -61260875 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 7 1064 343 256 0 12 chr9 62815349 62815432 -61260740 + ID4 SINE ID 2 83 0 7 1064 621 123 43 78 chr9 62815479 62815620 -61260552 - MTD LTR MaLR 0 419 284 7 1064 268 162 0 0 chr9 62815621 62815658 -61260514 - B1_Mus2 SINE Alu -110 37 1 7 1064 242 300 0 16 chr9 62815658 62815672 -61260500 - MT2B2 LTR ERVL -281 281 244 7 1064 236 250 0 0 chr9 62815687 62815739 -61260433 + PB1D9 SINE Alu 69 120 0 7 1064 281 317 0 24 chr9 62815750 62815822 -61260350 + ID_B1 SINE B4 88 157 -67 7 1064 922 276 9 31 chr9 62815822 62816046 -61260126 + ID_B1 SINE B4 4 222 -2 7 1064 1676 241 90 54 chr9 62816100 62816200 -61259972 - Charlie1a DNA MER1_type -561 894 801 7 1064 370 238 59 110 chr9 62816200 62816318 -61259854 + PB1D7 SINE Alu 1 112 -8 7 1064 1676 241 90 54 chr9 62816318 62816831 -61259341 - Charlie1a DNA MER1_type -655 800 259 7 1064 219 167 0 0 chr9 62816875 62816917 -61259255 + GA-rich Low_complexity Low_complexity 1 42 0 7 1064 345 24 0 0 chr9 62816919 62816961 -61259211 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1064 221 353 0 0 chr9 62816961 62817029 -61259143 - ID4 SINE ID -14 69 2 7 1064 498 312 95 67 chr9 62817463 62817779 -61258393 + ORR1E LTR MaLR 1 325 -34 7 1064 252 0 0 0 chr9 62817864 62817892 -61258280 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1064 486 167 156 62 chr9 62817907 62818035 -61258137 - B1_Mur1 SINE Alu -8 141 2 7 1064 661 184 53 66 chr9 62818458 62818527 -61257645 - B1_Mur4 SINE Alu 0 150 88 8 1064 3416 26 39 3 chr9 62818527 62818909 -61257263 - MTA_Mm LTR MaLR 0 396 1 8 1064 661 184 53 66 chr9 62818909 62818990 -61257182 - B1_Mur4 SINE Alu -63 87 2 8 1064 375 297 0 0 chr9 62819188 62819289 -61256883 + PB1D10 SINE Alu 17 117 0 8 1064 871 176 15 0 chr9 62819858 62819994 -61256178 - B1_Mur3 SINE Alu -11 138 1 8 1064 394 274 52 17 chr9 62820719 62820834 -61255338 + PB1D7 SINE Alu 2 120 0 8 1064 603 290 80 11 chr9 62821538 62821726 -61254446 + ID_B1 SINE B4 4 204 -20 8 1064 225 94 0 0 chr9 62821782 62821814 -61254358 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 8 1064 252 184 0 0 chr9 62821845 62821894 -61254278 + (TA)n Simple_repeat Simple_repeat 1 49 0 8 1064 1204 88 0 0 chr9 62821972 62822120 -61254052 - B1_Mus1 SINE Alu 0 148 1 8 1064 25 0 0 0 chr9 62822178 62822203 -61253969 + AT_rich Low_complexity Low_complexity 1 25 0 8 1064 972 205 47 28 chr9 62822301 62822512 -61253660 + B3 SINE B2 2 216 0 8 1064 1035 104 0 0 chr9 62822559 62822694 -61253478 + B1_Mus1 SINE Alu 1 135 -13 8 1064 339 85 0 0 chr9 62822696 62822743 -61253429 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 1064 549 270 10 9 chr9 62822836 62822986 -61253186 + B1_Mur1 SINE Alu 1 146 -3 8 1064 1113 51 244 0 chr9 62823254 62823410 -61252762 + B2_Mm2 SINE B2 2 195 0 8 1064 439 322 26 0 chr9 62823417 62823532 -61252640 + ID_B1 SINE B4 86 203 -21 8 1064 390 264 45 9 chr9 62824357 62824468 -61251704 + PB1D7 SINE Alu 5 119 -1 8 1064 1329 134 45 18 chr9 62824510 62824730 -61251442 + URR1A DNA MER1_type 1 226 0 8 1064 396 255 21 21 chr9 62824790 62824886 -61251286 - PB1D10 SINE Alu -1 116 21 8 1064 221 0 0 33 chr9 62824899 62824929 -61251243 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 8 1064 769 144 21 41 chr9 62824939 62825084 -61251088 + B1_Mur1 SINE Alu 6 147 -2 8 1064 768 197 35 14 chr9 62826111 62826255 -61249917 - B1_Mur2 SINE Alu -1 148 2 8 1064 1011 96 0 70 chr9 62826436 62826593 -61249579 + B1_Mur4 SINE Alu 5 150 0 8 1064 622 238 6 83 chr9 62826770 62826926 -61249246 + B1_Mur1 SINE Alu 1 144 -5 8 1064 261 0 0 0 chr9 62827086 62827115 -61249057 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1064 25 31 0 0 chr9 62827191 62827223 -61248949 + AT_rich Low_complexity Low_complexity 1 32 0 8 1064 27 49 0 0 chr9 62828122 62828163 -61248009 + GC_rich Low_complexity Low_complexity 1 41 0 8 1064 198 0 0 0 chr9 62829203 62829225 -61246947 + (TA)n Simple_repeat Simple_repeat 2 23 0 8 1064 216 297 27 0 chr9 62830139 62830213 -61245959 + CT-rich Low_complexity Low_complexity 2 77 0 8 1064 233 221 169 42 chr9 62830214 62830285 -61245887 - B1_Mur2 SINE Alu -18 131 52 8 1064 249 143 102 51 chr9 62830233 62830292 -61245880 + 4.5SRNA scRNA scRNA 25 86 -8 8 1064 550 155 0 12 chr9 62830246 62830331 -61245841 + B1_Mur3 SINE Alu 47 130 -19 8 1064 314 207 24 0 chr9 62830351 62830433 -61245739 + GA-rich Low_complexity Low_complexity 3 86 0 8 1064 532 281 147 45 chr9 62830603 62830801 -61245371 + ID_B1 SINE B4 3 220 -4 8 1064 207 0 0 0 chr9 62830818 62830841 -61245331 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 8 1064 641 200 103 8 chr9 62830855 62830981 -61245191 + B1_Mur1 SINE Alu 3 140 -9 8 1064 261 83 0 0 chr9 62830982 62831018 -61245154 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 8 1064 234 0 0 0 chr9 62831139 62831165 -61245007 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 1064 200 373 93 7 chr9 62831165 62831316 -61244856 + L2 LINE L2 2535 2698 -721 8 1064 512 236 0 68 chr9 62831496 62831614 -61244558 + B1F SINE Alu 26 135 -14 8 1064 367 284 38 133 chr9 62831986 62832228 -61243944 - MTEb LTR MaLR 0 379 168 8 1064 297 153 0 0 chr9 62832228 62832300 -61243872 + (TCTCTG)n Simple_repeat Simple_repeat 6 77 0 8 1064 383 330 20 0 chr9 62832300 62832400 -61243772 - PB1D9 SINE Alu -17 103 2 8 1064 280 275 0 0 chr9 62832402 62832471 -61243701 - MTEb-int LTR MaLR -118 1252 1184 8 1064 677 294 71 60 chr9 62832476 62832565 -61243607 + Lx8 LINE L1 6986 7072 -401 8 1064 433 16 16 32 chr9 62832565 62832628 -61243544 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 8 1064 1138 59 22 0 chr9 62832628 62832763 -61243409 - B1_Mus1 SINE Alu -9 139 2 8 1064 677 294 71 60 chr9 62832763 62832954 -61243218 + Lx8 LINE L1 7073 7269 -204 8 1064 258 246 0 0 chr9 62832960 62833021 -61243151 + RMER15 LTR ERVL 409 469 -106 8 1064 1100 115 17 0 chr9 62833251 62833425 -61242747 + ORR1B1 LTR MaLR 1 177 -217 8 1064 2389 152 69 9 chr9 62833433 62833883 -61242289 + RMER4B LTR ERVK 17 493 -92 8 1064 323 44 22 0 chr9 62833883 62833928 -61242244 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1064 597 148 47 39 chr9 62833928 62834055 -61242117 + RMER4B LTR ERVK 458 585 0 8 1064 1142 157 27 27 chr9 62834055 62834176 -61241996 + ORR1B1 LTR MaLR 172 291 -103 8 1064 1857 133 83 48 chr9 62834176 62834375 -61241797 - RMER17C LTR ERVK 0 410 182 8 1064 676 33 0 21 chr9 62834375 62834468 -61241704 + (GGAGA)n Simple_repeat Simple_repeat 2 92 0 8 1064 1857 133 83 48 chr9 62834468 62834664 -61241508 - RMER17C LTR ERVK -229 181 1 8 1064 1142 157 27 27 chr9 62834664 62834682 -61241490 + ORR1B1 LTR MaLR 292 306 -88 8 1064 468 0 0 0 chr9 62834682 62834734 -61241438 + (GGAGA)n Simple_repeat Simple_repeat 1 52 0 8 1064 1142 157 27 27 chr9 62834734 62834816 -61241356 + ORR1B1 LTR MaLR 307 392 -2 8 1064 1107 265 93 6 chr9 62834816 62835138 -61241034 - MTE-int LTR MaLR -270 1310 960 8 1064 226 268 0 0 chr9 62835667 62835723 -61240449 + CT-rich Low_complexity Low_complexity 2 57 0 8 1064 227 160 80 148 chr9 62835910 62835998 -61240174 + MLT1I LTR MaLR 323 404 -7 8 1064 211 176 0 50 chr9 62836120 62836180 -61239992 + T-rich Low_complexity Low_complexity 4 60 0 8 1064 714 252 0 26 chr9 62836181 62836332 -61239840 - B1_Mur2 SINE Alu -2 147 1 8 1064 482 263 67 72 chr9 62836334 62836514 -61239658 - B3A SINE B2 -1 197 19 8 1064 417 35 17 0 chr9 62836546 62836604 -61239568 - ORR1C2 LTR MaLR 0 346 288 8 1064 5141 72 23 4 chr9 62836592 62837377 -61238795 - ORR1C2-int LTR MaLR -992 800 1 8 1064 3276 68 72 2 chr9 62837377 62837821 -61238351 - MT2C_Mm LTR ERVL 0 475 1 8 1064 1680 156 18 53 chr9 62837821 62838160 -61238012 - ORR1C2 LTR MaLR -56 328 2 8 1064 1261 262 87 40 chr9 62838240 62838686 -61237486 + Lx8 LINE L1 6951 7417 -56 8 1064 1011 185 256 52 chr9 62838750 62839058 -61237114 + ORR1D1 LTR MaLR 2 372 -2 8 1064 532 244 44 0 chr9 62839058 62839193 -61236979 - Lx8 LINE L1 -363 7110 6970 8 1064 418 295 0 0 chr9 62839195 62839290 -61236882 + B3A SINE B2 9 103 -95 8 1064 1119 286 47 53 chr9 62839823 62839834 -61236338 + L1M2 LINE L1 4441 4448 -1695 8 1064 351 0 0 0 chr9 62839834 62839873 -61236299 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1064 1119 286 47 53 chr9 62839873 62839941 -61236231 + L1M2 LINE L1 4449 4512 -1631 8 1064 4140 110 7 0 chr9 62839941 62840521 -61235651 - MT2B2 LTR ERVL 0 584 1 8 1064 1119 286 47 53 chr9 62840521 62840971 -61235201 + L1M2 LINE L1 4513 4968 -1175 8 1064 405 153 0 0 chr9 62840980 62841052 -61235120 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1064 311 173 30 38 chr9 62841510 62841642 -61234530 + (TATG)n Simple_repeat Simple_repeat 4 134 0 8 1064 21 57 0 0 chr9 62841691 62841726 -61234446 + AT_rich Low_complexity Low_complexity 1 35 0 8 1064 655 242 0 0 chr9 62841739 62841871 -61234301 - RSINE1 SINE B4 -31 134 3 8 1064 756 262 34 13 chr9 62841871 62842095 -61234077 - B4A SINE B4 -62 230 2 8 1064 348 24 0 0 chr9 62842119 62842160 -61234012 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1064 1036 271 45 27 chr9 62842169 62842545 -61233627 - L1MA4 LINE L1 -366 5934 5552 8 1064 231 250 14 14 chr9 62842622 62842695 -61233477 - L1_Mur3 LINE L1 -509 5371 5299 8 1064 626 202 0 24 chr9 62843610 62843737 -61232435 - B1_Mus1 SINE Alu -13 135 12 8 1064 683 309 45 5 chr9 62843779 62844001 -61232171 + B4A SINE B4 1 231 -61 8 1064 226 289 111 0 chr9 62844001 62844091 -61232081 + B3A SINE B2 1 100 -98 8 1064 231 338 68 0 chr9 62844247 62844321 -61231851 + RSINE1 SINE B4 86 164 -1 8 1064 441 225 98 9 chr9 62844343 62844455 -61231717 - B1F SINE Alu 0 149 28 8 1064 493 250 117 0 chr9 62844602 62844722 -61231450 - ID_B1 SINE B4 -5 219 86 8 1064 649 239 71 16 chr9 62844880 62845063 -61231109 + B3A SINE B2 3 195 -3 8 1064 583 250 161 0 chr9 62845111 62845291 -61230881 - B3 SINE B2 -4 212 4 8 1064 254 221 152 9 chr9 62846090 62846195 -61229977 - MER2 DNA MER2_type -145 200 81 8 1064 412 239 191 20 chr9 62846203 62846351 -61229821 + B3A SINE B2 44 216 0 8 1064 1059 243 38 21 chr9 62846353 62846643 -61229529 + Lx6 LINE L1 7139 7433 -27 8 1064 646 175 31 16 chr9 62846666 62846794 -61229378 + B1_Mur1 SINE Alu 8 137 -12 8 1064 276 298 115 8 chr9 62847481 62847603 -61228569 + MamGypLTR1c LTR Gypsy 14 148 -655 8 1064 513 0 0 0 chr9 62848563 62848620 -61227552 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 1064 324 0 0 0 chr9 62848620 62848655 -61227517 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1064 244 259 0 0 chr9 62848659 62848713 -61227459 + CT-rich Low_complexity Low_complexity 4 57 0 8 1064 721 172 16 8 chr9 62848733 62848862 -61227310 - B1_Mur1 SINE Alu -19 130 1 8 1064 364 336 0 0 chr9 62849042 62849152 -61227020 + PB1D7 SINE Alu 1 110 -10 8 1064 1450 306 23 7 chr9 62849153 62849590 -61226582 + Lx8 LINE L1 6811 7254 -219 8 1064 207 220 0 0 chr9 62849642 62849692 -61226480 + GA-rich Low_complexity Low_complexity 1 50 0 8 1064 376 284 48 10 chr9 62849897 62850000 -61226172 - MER47B DNA MER2_type -203 215 109 8 1064 382 228 21 42 chr9 62850191 62850287 -61225885 - B4 SINE B4 -193 99 6 8 1064 22 35 0 0 chr9 62850304 62850333 -61225839 + AT_rich Low_complexity Low_complexity 1 29 0 8 1064 706 161 91 32 chr9 62850345 62850531 -61225641 + Tigger5 DNA MER2_type 2135 2331 -75 8 1064 1974 109 0 70 chr9 62850544 62850889 -61225283 + ORR1A4 LTR MaLR 1 321 -8 9 1064 575 263 99 33 chr9 62850902 62851083 -61225089 - B3A SINE B2 -4 194 2 9 1064 902 178 200 0 chr9 62851096 62851276 -61224896 - B3 SINE B2 0 216 1 9 1064 305 197 56 0 chr9 62851298 62851369 -61224803 + Tigger5 DNA MER2_type 2326 2400 -6 8 1064 235 312 17 67 chr9 62851397 62851517 -61224655 - PB1D10 SINE Alu -1 116 3 9 1064 516 303 32 26 chr9 62851760 62851916 -61224256 + RSINE1 SINE B4 3 159 -6 9 1064 899 245 48 10 chr9 62852674 62852880 -61223292 - ID_B1 SINE B4 -8 216 3 9 1064 261 0 0 0 chr9 62852992 62853021 -61223151 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 9 1064 456 296 134 27 chr9 62853336 62853485 -61222687 - RSINE1 SINE B4 0 165 1 9 1064 251 226 194 0 chr9 62853485 62853576 -61222596 - MER63D DNA AcHobo -950 111 3 9 1064 508 300 47 12 chr9 62853710 62853882 -61222290 - RMER30 DNA MER1_type 0 202 25 9 1064 580 217 116 0 chr9 62854547 62854676 -61221496 + B1_Mur2 SINE Alu 1 144 -5 9 1064 701 191 93 55 chr9 62854685 62854868 -61221304 - B3A SINE B2 -2 196 7 9 1064 834 171 64 0 chr9 62854882 62855022 -61221150 - B1_Mur3 SINE Alu 0 149 1 9 1064 435 106 0 0 chr9 62855040 62855106 -61221066 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 9 1064 273 286 24 0 chr9 62855331 62855415 -61220757 - 4.5SRNA scRNA scRNA -8 86 1 9 1064 201 381 54 23 chr9 62855481 62855610 -61220562 + L2 LINE L2 2695 2827 -592 9 1064 564 241 66 0 chr9 62855800 62855937 -61220235 + RSINE1 SINE B4 4 149 -16 9 1064 1047 203 155 37 chr9 62856332 62856629 -61219543 + IAPEY3_LTR LTR ERVK 1 332 0 9 1064 254 151 14 0 chr9 62857133 62857206 -61218966 + (TTTG)n Simple_repeat Simple_repeat 1 74 0 9 1064 858 44 9 0 chr9 62857206 62857320 -61218852 - B1_Mus1 SINE Alu -1 147 33 9 1064 431 290 15 0 chr9 62857515 62857646 -61218526 + ID_B1 SINE B4 88 220 -4 9 1064 350 260 3 28 chr9 62857971 62858086 -61218086 + ID4 SINE ID 2 113 -39 9 1064 570 41 0 0 chr9 62858486 62858559 -61217613 + (TC)n Simple_repeat Simple_repeat 2 74 0 9 1064 250 179 96 78 chr9 62858571 62858686 -61217486 - Lx8 LINE L1 -29 7444 7328 9 1064 5504 232 31 44 chr9 62858717 62859878 -61216294 - Lx7 LINE L1 -278 7418 6277 9 1064 1406 63 17 0 chr9 62859878 62860053 -61216119 - B2_Mm2 SINE B2 -15 180 3 9 1064 5504 232 31 44 chr9 62860053 62860224 -61215948 - Lx7 LINE L1 -1420 6276 6103 9 1064 14682 131 36 19 chr9 62860242 62862153 -61214019 - MYSERV6-int LTR ERVK -20 8939 7008 9 1064 755 81 18 0 chr9 62862153 62862264 -61213908 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 9 1064 1372 73 17 0 chr9 62862264 62862442 -61213730 - B2_Mm2 SINE B2 -14 181 1 9 1064 14682 121 119 15 chr9 62862442 62863020 -61213152 - MYSERV6-int LTR ERVK -1952 7007 6357 9 1064 215 293 0 0 chr9 62863020 62863031 -61213141 - ID_B1 SINE B4 -72 152 95 9 1064 249 213 0 0 chr9 62863031 62863078 -61213094 - B1_Mus1 SINE Alu -87 61 15 9 1064 247 209 0 0 chr9 62863074 62863117 -61213055 - B1_Mus1 SINE Alu -100 48 6 9 1064 567 108 181 47 chr9 62863182 62863309 -61212863 - MYSERV6-int LTR ERVK -3942 5017 4874 9 1064 2020 133 45 11 chr9 62863324 62863663 -61212509 - MYSERV6-int LTR ERVK -4262 4697 4346 9 1064 3314 130 16 0 chr9 62863663 62864154 -61212018 + RLTR19 LTR ERVK 1 499 0 9 1064 2020 133 45 11 chr9 62864154 62864170 -61212002 - MYSERV6-int LTR ERVK -4614 4345 4330 9 1064 727 139 0 16 chr9 62864168 62864292 -61211880 + MYSERV6-int LTR ERVK 3291 3412 -5547 9 1064 6524 118 19 23 chr9 62864287 62865304 -61210868 - MYSERV6-int LTR ERVK -5666 3293 2281 9 1064 453 36 0 0 chr9 62865304 62865359 -61210813 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 9 1064 2081 145 0 3 chr9 62865378 62865717 -61210455 - ORR1A1 LTR MaLR -8 338 1 9 1064 3336 128 20 0 chr9 62865731 62866229 -61209943 - MYSERV6-int LTR ERVK -6761 2198 1691 9 1064 740 124 317 0 chr9 62866229 62866415 -61209757 + RMER15 LTR ERVL 331 575 0 9 1064 284 139 395 0 chr9 62866556 62866642 -61209530 - PB1D9 SINE Alu 0 120 1 9 1064 270 293 77 124 chr9 62866733 62867006 -61209166 - ORR1E LTR MaLR -21 338 79 9 1064 742 249 33 0 chr9 62867560 62867741 -61208431 + ID_B1 SINE B4 38 224 0 9 1064 325 281 49 0 chr9 62867898 62867980 -61208192 + B1F SINE Alu 1 86 -63 9 1064 320 167 22 0 chr9 62868220 62868310 -61207862 + (TATG)n Simple_repeat Simple_repeat 4 95 0 9 1064 1228 48 0 0 chr9 62868405 62868552 -61207620 - B1_Mus1 SINE Alu 0 148 2 9 1064 423 98 0 0 chr9 62868596 62868657 -61207515 + (CATA)n Simple_repeat Simple_repeat 2 62 0 9 1064 1053 115 0 0 chr9 62868797 62868945 -61207227 + B1_Mus1 SINE Alu 1 148 0 9 1064 381 187 0 0 chr9 62868945 62869020 -61207152 + A-rich Low_complexity Low_complexity 1 75 0 9 1064 558 43 0 0 chr9 62869539 62869608 -61206564 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 9 1064 360 43 0 0 chr9 62869608 62869654 -61206518 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 9 1064 489 158 0 0 chr9 62869964 62870046 -61206126 + PB1D9 SINE Alu 1 82 -38 9 1064 273 282 41 49 chr9 62870108 62870231 -61205941 - Charlie1a DNA MER1_type -574 881 760 9 1064 755 197 60 26 chr9 62870262 62870413 -61205759 - RSINE1 SINE B4 -8 157 2 9 1064 947 286 52 58 chr9 62870414 62870918 -61205254 - Charlie1a DNA MER1_type -684 771 271 9 1064 347 289 80 131 chr9 62870942 62871141 -61205031 - ID_B1 SINE B4 -33 191 3 9 1064 1229 27 0 26 chr9 62871257 62871409 -61204763 - B1_Mus1 SINE Alu 0 148 1 9 1064 1176 52 218 0 chr9 62871520 62871694 -61204478 + L1_Mus2 LINE L1 6354 6565 -1 9 1064 252 287 30 96 chr9 62871778 62871913 -61204259 - MIRb SINE MIR -100 168 43 9 1064 717 269 50 5 chr9 62872294 62872492 -61203680 - ID_B1 SINE B4 -2 222 16 9 1064 1000 219 5 33 chr9 62872567 62872582 -61203590 - B3 SINE B2 -6 210 199 9 1064 3073 18 9 0 chr9 62872582 62872925 -61203247 + ORR1A0 LTR MaLR 1 346 0 9 1064 1000 219 5 33 chr9 62872925 62873122 -61203050 - B3 SINE B2 -18 198 4 9 1064 742 200 21 0 chr9 62873140 62873280 -61202892 - B1_Mur1 SINE Alu -6 143 1 9 1064 345 136 0 0 chr9 62873652 62873665 -61202507 + (TTCTCC)n Simple_repeat Simple_repeat 4 16 0 9 1064 1620 0 0 0 chr9 62873665 62873845 -61202327 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 1064 345 136 0 0 chr9 62873845 62873890 -61202282 + (TTCTCC)n Simple_repeat Simple_repeat 1 45 0 9 1064 1476 92 0 0 chr9 62873901 62874258 -61201914 + (TTC)n Simple_repeat Simple_repeat 1 357 0 9 1064 969 172 0 0 chr9 62874288 62874468 -61201704 + CT-rich Low_complexity Low_complexity 1 180 0 9 1064 387 265 28 100 chr9 62874657 62874837 -61201335 + B4A SINE B4 1 167 -125 9 1064 608 196 28 35 chr9 62874765 62874895 -61201277 + B1_Mur2 SINE Alu 8 137 -12 9 1064 225 0 0 0 chr9 62874895 62874920 -61201252 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 1064 608 196 28 35 chr9 62874920 62874932 -61201240 + B1_Mur2 SINE Alu 138 149 0 9 1064 429 267 49 16 chr9 62874959 62875081 -61201091 + B4A SINE B4 82 207 -85 9 1064 833 224 102 0 chr9 62875091 62875287 -61200885 + B3 SINE B2 1 216 0 9 1064 659 242 38 0 chr9 62875366 62875523 -61200649 + U1 snRNA snRNA 1 163 -2 9 1064 312 27 0 0 chr9 62875642 62875679 -61200493 + (TC)n Simple_repeat Simple_repeat 1 37 0 9 1064 294 50 0 0 chr9 62875679 62875718 -61200454 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1064 719 321 18 43 chr9 62876520 62876797 -61199375 + RCHARR1 DNA MER1_type 3 272 -702 9 1064 796 221 112 97 chr9 62876820 62876911 -61199261 + RCHARR1 DNA MER1_type 407 484 -490 9 1064 741 212 80 0 chr9 62876911 62877062 -61199110 + RSINE1 SINE B4 3 165 0 9 1064 796 221 112 97 chr9 62877062 62877300 -61198872 + RCHARR1 DNA MER1_type 485 741 -233 9 1064 806 146 7 21 chr9 62877302 62877442 -61198730 - B1_Mus2 SINE Alu -1 146 9 9 1064 286 173 0 0 chr9 62877459 62877511 -61198661 + RCHARR1 DNA MER1_type 762 813 -161 9 1064 305 174 14 0 chr9 62877535 62877604 -61198568 + (TA)n Simple_repeat Simple_repeat 2 71 0 9 1064 205 122 0 75 chr9 62877638 62877691 -61198481 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1064 422 287 48 74 chr9 62877719 62877953 -61198219 - B4 SINE B4 -11 281 67 9 1064 234 150 0 0 chr9 62877990 62878030 -61198142 + (GGA)n Simple_repeat Simple_repeat 1 40 0 9 1064 267 339 52 0 chr9 62878236 62878351 -61197821 + MER44D DNA MER2_type 1 121 -584 9 1064 436 288 28 61 chr9 62878346 62878527 -61197645 + MER44D DNA MER2_type 490 664 -41 9 1064 384 225 76 59 chr9 62879642 62879760 -61196412 - ID_B1 SINE B4 -19 205 86 9 1064 24 0 0 0 chr9 62879763 62879787 -61196385 + AT_rich Low_complexity Low_complexity 1 24 0 9 1064 450 254 105 88 chr9 62879787 62879968 -61196204 - B3A SINE B2 -1 197 14 9 1064 243 0 0 0 chr9 62879968 62879995 -61196177 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 1064 853 70 0 0 chr9 62880000 62880115 -61196057 - B1_Mm SINE Alu -32 115 1 9 1064 263 258 15 15 chr9 62880008 62880138 -61196034 - ORR1B1-int LTR MaLR -755 754 625 9 1064 816 152 0 35 chr9 62880179 62880322 -61195850 - B3 SINE B2 -76 140 3 9 1064 211 179 26 0 chr9 62880472 62880511 -61195661 - ID4 SINE ID -42 41 2 9 1064 528 195 29 6 chr9 62880548 62880723 -61195449 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1064 210 182 146 0 chr9 62880773 62880828 -61195344 - ID4 SINE ID -20 63 1 9 1064 395 272 10 0 chr9 62880981 62881084 -61195088 + MER102c DNA MER1_type 219 322 -9 9 1064 711 272 47 24 chr9 62881219 62881430 -61194742 - B3 SINE B2 0 216 1 9 1064 889 243 23 9 chr9 62881550 62881766 -61194406 + ID_B1 SINE B4 1 219 -5 9 1064 339 179 0 0 chr9 62882529 62882596 -61193576 - HAL1-3A_ME LINE L1 -817 2041 1975 9 1064 206 222 0 31 chr9 62882597 62882662 -61193510 + (TATG)n Simple_repeat Simple_repeat 1 63 0 9 1064 781 293 44 68 chr9 62882678 62882974 -61193198 - B4 SINE B4 0 292 4 9 1064 1188 111 0 0 chr9 62883765 62883945 -61192227 + (TCC)n Simple_repeat Simple_repeat 1 180 0 9 1064 201 175 0 0 chr9 62883947 62883987 -61192185 + CT-rich Low_complexity Low_complexity 4 43 0 9 1064 396 294 7 14 chr9 62884841 62884979 -61191193 + MER106B DNA MER1_type 133 269 -790 9 1064 260 239 76 86 chr9 62885140 62885245 -61190927 + MER106B DNA MER1_type 946 1049 -10 9 1064 290 248 127 8 chr9 62885451 62885569 -61190603 - LTR16E1 LTR ERVL -1 537 406 9 1064 661 243 140 34 chr9 62885833 62886097 -61190075 - RMER15 LTR ERVL 0 575 284 1 1064 309 349 40 33 chr9 62886274 62886425 -61189747 + LTR33 LTR ERVL 166 317 -198 1 1064 594 0 0 0 chr9 62886453 62886519 -61189653 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 1 1064 3749 35 7 7 chr9 62886679 62887133 -61189039 - L1Md_F3 LINE L1 -1 6583 6130 1 1064 232 250 83 0 chr9 62887685 62887745 -61188427 + B4A SINE B4 82 146 -146 1 1064 394 219 14 0 chr9 62887694 62887767 -61188405 + PB1D10 SINE Alu 10 83 -34 1 1064 228 148 29 10 chr9 62887773 62887875 -61188297 + GA-rich Low_complexity Low_complexity 1 103 0 1 1064 647 275 6 101 chr9 62888187 62888365 -61187807 - RSINE1 SINE B4 -2 163 3 1 1064 198 0 0 0 chr9 62888437 62888459 -61187713 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 1 1064 230 136 0 22 chr9 62888456 62888501 -61187671 + CT-rich Low_complexity Low_complexity 4 47 0 1 1064 393 262 0 0 chr9 62888524 62888604 -61187568 - ID4 SINE ID -2 81 2 1 1064 323 328 52 32 chr9 62888700 62888907 -61187265 - L2b LINE L2 -5 3382 3181 1 1064 564 15 0 0 chr9 62889236 62889301 -61186871 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1064 655 269 6 71 chr9 62889333 62889501 -61186671 - B3A SINE B2 -41 157 1 1 1064 324 0 0 0 chr9 62889648 62889684 -61186488 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1064 272 281 34 45 chr9 62889686 62889794 -61186378 - PB1D10 SINE Alu -26 123 12 1 1064 441 0 0 0 chr9 62889982 62890031 -61186141 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1064 189 303 214 0 chr9 62890282 62890371 -61185801 - MIRm SINE MIR -165 111 4 1 1064 456 35 0 0 chr9 62890456 62890514 -61185658 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1064 212 122 0 24 chr9 62890942 62890984 -61185188 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 1064 1146 154 69 5 chr9 62891565 62891767 -61184405 - B3 SINE B2 0 216 2 1 1064 645 279 81 84 chr9 62891767 62892384 -61183788 - L1M2 LINE L1 -803 5494 4873 1 1064 6905 24 0 0 chr9 62892536 62893314 -61182858 + L1Md_F2 LINE L1 5804 6581 -1 1 1064 387 168 351 0 chr9 62893562 62893673 -61182499 - B3 SINE B2 -58 137 2 1 1064 342 195 124 79 chr9 62893676 62893765 -61182407 - PB1D10 SINE Alu -6 121 29 1 1064 441 221 148 47 chr9 62893809 62893937 -61182235 + B1F SINE Alu 9 149 0 1 1064 342 225 99 0 chr9 62893963 62894074 -61182098 - L1MC4 LINE L1 -188 7854 7733 1 1064 310 308 190 51 chr9 62894140 62894335 -61181837 - ID_B1 SINE B4 0 224 3 1 1064 288 0 0 0 chr9 62894360 62894392 -61181780 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1064 663 217 23 0 chr9 62894392 62894521 -61181651 - B3A SINE B2 -65 133 2 1 1064 552 254 94 36 chr9 62894535 62894806 -61181366 - L1MC4 LINE L1 -482 7560 7234 1 1064 468 0 0 0 chr9 62894814 62894866 -61181306 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1064 224 286 0 0 chr9 62894868 62894917 -61181255 - ID4 SINE ID -17 66 18 1 1064 380 154 15 0 chr9 62894975 62895040 -61181132 - B1_Mur4 SINE Alu -70 80 15 1 1064 281 264 14 27 chr9 62894982 62895056 -61181116 - B4A SINE B4 -136 156 84 1 1064 632 247 84 0 chr9 62895084 62895250 -61180922 - B3A SINE B2 -16 182 3 1 1064 252 100 0 0 chr9 62895261 62895301 -61180871 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1064 1032 86 7 14 chr9 62895324 62895466 -61180706 - B1_Mus2 SINE Alu -1 146 6 1 1064 195 100 0 0 chr9 62895466 62895496 -61180676 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1 1064 471 200 139 70 chr9 62895564 62895693 -61180479 + B1_Mur2 SINE Alu 12 149 0 1 1064 454 269 28 0 chr9 62895708 62895816 -61180356 - ID_B1 SINE B4 -16 208 98 1 1064 285 209 0 0 chr9 62895867 62895934 -61180238 + CT-rich Low_complexity Low_complexity 1 67 0 1 1064 301 291 126 41 chr9 62896037 62896306 -61179866 - L1MC4 LINE L1 -973 7069 6778 1 1064 328 246 14 0 chr9 62896432 62896501 -61179671 - ID4_ SINE ID -9 74 5 1 1064 840 319 12 56 chr9 62896757 62897006 -61179166 + B4 SINE B4 51 288 -4 1 1064 363 254 138 29 chr9 62897358 62897532 -61178640 + ID_B1 SINE B4 4 196 -28 1 1064 870 146 14 27 chr9 62897686 62897834 -61178338 + B1_Mur3 SINE Alu 3 148 -1 1 1064 195 42 0 0 chr9 62898198 62898222 -61177950 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1064 441 271 0 86 chr9 62898225 62898342 -61177830 - PB1D9 SINE Alu -13 107 1 1 1064 408 229 130 28 chr9 62898378 62898486 -61177686 + PB1D7 SINE Alu 1 119 -1 1 1064 720 167 87 0 chr9 62898564 62898702 -61177470 + B1_Mur4 SINE Alu 1 150 0 1 1064 838 135 0 0 chr9 62898836 62898962 -61177210 + B1_Mus1 SINE Alu 22 147 -1 1 1064 234 150 0 0 chr9 62898966 62899006 -61177166 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1064 320 314 16 16 chr9 62899008 62899134 -61177038 + L1MEg LINE L1 1804 1929 -4155 1 1064 619 258 20 92 chr9 62899140 62899336 -61176836 + B3A SINE B2 1 182 -16 1 1064 252 137 0 0 chr9 62899336 62899387 -61176785 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1064 1656 279 47 35 chr9 62899402 62900076 -61176096 + L1MB7 LINE L1 5358 6066 -118 1 1064 291 257 27 0 chr9 62900078 62900152 -61176020 + B3A SINE B2 19 94 -104 1 1064 363 23 0 0 chr9 62900282 62900326 -61175846 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1064 359 171 232 0 chr9 62900483 62900565 -61175607 + ID_B1 SINE B4 124 224 0 1 1064 249 299 14 7 chr9 62900558 62900706 -61175466 + ORR1B1-int LTR MaLR 605 753 -756 1 1064 1088 66 0 0 chr9 62900604 62900741 -61175431 + B1_Mus1 SINE Alu 6 142 -6 1 1064 216 67 0 0 chr9 62900741 62900771 -61175401 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1064 1361 294 38 35 chr9 62900783 62901525 -61174647 + L1MA6 LINE L1 5143 5861 -439 1 1064 350 302 0 0 chr9 62901987 62902083 -61174089 + PB1D10 SINE Alu 11 106 -11 1 1064 1697 93 0 4 chr9 62902153 62902380 -61173792 - URR1A DNA MER1_type 0 226 1 1 1064 297 218 0 0 chr9 62902952 62903007 -61173165 + RSINE1 SINE B4 111 165 0 1 1064 1351 85 10 31 chr9 62903048 62903243 -61172929 + B2_Mm1t SINE B2 2 192 -1 1 1064 1306 75 20 46 chr9 62903268 62903463 -61172709 + B2_Mm2 SINE B2 2 191 -4 1 1064 641 165 26 9 chr9 62903540 62903656 -61172516 + PB1D9 SINE Alu 2 119 -1 1 1064 25 65 0 0 chr9 62904123 62904169 -61172003 + AT_rich Low_complexity Low_complexity 1 46 0 1 1064 384 222 12 24 chr9 62904271 62904354 -61171818 + ID4_ SINE ID 2 83 0 1 1064 244 189 113 0 chr9 62904401 62904454 -61171718 + B3A SINE B2 1 59 -139 1 1064 311 327 9 0 chr9 62904772 62904882 -61171290 - Lx8 LINE L1 -605 6868 6758 1 1064 583 219 66 40 chr9 62904883 62904977 -61171195 - RLTR20C LTR ERVK 0 578 490 1 1064 303 28 0 0 chr9 62904977 62905013 -61171159 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1064 1105 192 99 56 chr9 62905013 62905367 -61170805 - RLTR20C LTR ERVK -89 489 1 1 1064 744 259 108 18 chr9 62905367 62905747 -61170425 - Lx8 LINE L1 -711 6762 6322 1 1064 643 264 0 14 chr9 62905828 62905970 -61170202 - RSINE1 SINE B4 -24 141 2 1 1064 23 0 0 0 chr9 62906290 62906313 -61169859 + AT_rich Low_complexity Low_complexity 1 23 0 1 1064 185 65 32 0 chr9 62907646 62907677 -61168495 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1064 405 90 0 0 chr9 62907677 62907744 -61168428 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1064 277 267 35 35 chr9 62907744 62907874 -61168298 - B3A SINE B2 -62 133 4 1 1064 848 225 88 20 chr9 62907879 62908083 -61168089 - ID_B1 SINE B4 -5 219 2 1 1064 322 244 85 50 chr9 62908341 62908466 -61167706 - B1F2 SINE Alu 0 120 1 1 1064 618 302 68 60 chr9 62908493 62908743 -61167429 - MTE2a LTR MaLR 0 379 128 1 1064 218 271 17 0 chr9 62908760 62908819 -61167353 + ID4_ SINE ID 23 82 -1 1 1064 657 213 8 0 chr9 62908770 62908892 -61167280 + ID_B1 SINE B4 35 157 -67 1 1064 579 266 141 0 chr9 62908920 62909104 -61167068 + L1M3 LINE L1 5385 5594 -586 1 1064 415 218 32 56 chr9 62909147 62909273 -61166899 + L1MB7 LINE L1 5844 5966 -218 1 1064 932 207 38 14 chr9 62909273 62909484 -61166688 + B3 SINE B2 1 216 0 1 1064 339 279 93 0 chr9 62909696 62909782 -61166390 + PB1D10 SINE Alu 13 106 -11 1 1064 483 266 75 19 chr9 62910084 62910244 -61165928 - B3A SINE B2 -1 197 29 1 1064 246 127 247 2 chr9 62910244 62910310 -61165862 - ORR1E LTR MaLR -2 377 280 1 1064 3712 120 158 186 chr9 62910311 62910910 -61165262 + RLTR25B LTR ERVK 3 616 -412 1 1064 1251 114 11 0 chr9 62910910 62911086 -61165086 + B2_Mm1t SINE B2 2 179 -14 1 1064 3712 120 158 186 chr9 62911086 62911161 -61165011 + RLTR25B LTR ERVK 617 617 -411 1 1064 1164 68 0 7 chr9 62911161 62911308 -61164864 + B1_Mm SINE Alu 2 147 0 1 1064 3712 120 158 186 chr9 62911308 62911376 -61164796 + RLTR25B LTR ERVK 617 620 -408 1 1064 216 0 0 0 chr9 62911376 62911400 -61164772 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1064 3712 120 158 186 chr9 62911400 62911701 -61164471 + RLTR25B LTR ERVK 621 1019 -9 1 1064 1514 206 43 22 chr9 62911700 62912023 -61164149 - MTD LTR MaLR -77 342 13 1 1064 742 258 12 18 chr9 62912293 62912459 -61163713 + RSINE1 SINE B4 1 165 0 1 1064 507 260 169 14 chr9 62912577 62912784 -61163388 + MIR SINE MIR 9 247 -15 1 1064 492 259 44 100 chr9 62912975 62912993 -61163179 - B2_Mm1t SINE B2 -23 170 150 1 1064 441 0 0 0 chr9 62912993 62913042 -61163130 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1064 850 216 26 2 chr9 62913042 62913203 -61162969 - B3A SINE B2 -36 162 1 1 1064 244 273 88 29 chr9 62913394 62913414 -61162758 - BC1_Mm scRNA scRNA -43 109 91 1 1064 1362 86 37 11 chr9 62913414 62913603 -61162569 - B2_Mm2 SINE B2 0 195 2 1 1064 244 273 88 29 chr9 62913603 62913684 -61162488 - BC1_Mm scRNA scRNA -62 90 2 1 16 342 260 146 0 chr9 62914542 62914638 -61161534 - PB1D10 SINE Alu -7 110 1 1 1065 627 270 96 5 chr9 62914662 62914859 -61161313 - ID_B1 SINE B4 0 224 10 1 1065 492 319 35 0 chr9 62915213 62915354 -61160818 + RSINE1 SINE B4 4 149 -16 1 1065 216 0 0 0 chr9 62915355 62915379 -61160793 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1065 204 40 0 0 chr9 62915403 62915428 -61160744 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1065 390 278 113 117 chr9 62915933 62916136 -61160036 + ORR1E LTR MaLR 92 298 -61 1 1065 1647 21 11 0 chr9 62916136 62916323 -61159849 - B2_Mm1a SINE B2 -4 189 1 1 1065 390 278 113 117 chr9 62916323 62916384 -61159788 + ORR1E LTR MaLR 299 355 -4 1 1065 562 258 77 100 chr9 62916465 62916727 -61159445 + ORR1E LTR MaLR 3 258 -116 1 1065 921 179 14 76 chr9 62916826 62917037 -61159135 + B3A SINE B2 1 198 0 1 1065 636 228 106 47 chr9 62917314 62917484 -61158688 + B3 SINE B2 37 216 0 1 1065 346 244 24 24 chr9 62917666 62917750 -61158422 - PB1D10 SINE Alu -28 89 6 1 1065 629 196 44 15 chr9 62917696 62917831 -61158341 - ID_B1 SINE B4 -83 141 3 1 1065 329 292 20 30 chr9 62917898 62917997 -61158175 - MLT1A1 LTR MaLR -8 400 303 1 1065 619 288 12 25 chr9 62918363 62918523 -61157649 - RSINE1 SINE B4 0 165 8 1 1065 377 274 122 7 chr9 62918572 62918719 -61157453 - Lx8 LINE L1 -135 7338 7175 1 1065 1382 306 96 16 chr9 62918719 62919356 -61156816 - Charlie1a DNA MER1_type -27 1428 741 1 1065 234 0 0 0 chr9 62919468 62919494 -61156678 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1065 214 97 0 0 chr9 62919504 62919535 -61156637 - B1_Mus1 SINE Alu -88 60 30 1 1065 201 138 0 0 chr9 62919536 62919565 -61156607 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1065 710 238 112 36 chr9 62919571 62919767 -61156405 + B3 SINE B2 1 211 -5 1 1065 488 286 84 7 chr9 62919795 62919950 -61156222 + B4A SINE B4 109 275 -17 1 1065 510 274 82 22 chr9 62919949 62920132 -61156040 - Charlie1a DNA MER1_type -719 736 543 1 1065 798 167 150 36 chr9 62920109 62920302 -61155870 - ID_B1 SINE B4 -1 223 9 1 1065 273 224 0 17 chr9 62920323 62920382 -61155790 - Charlie1a DNA MER1_type -923 532 475 1 1065 532 163 184 0 chr9 62920534 62920632 -61155540 - B1_Mus1 SINE Alu -32 116 1 1 1065 504 211 0 10 chr9 62920642 62920738 -61155434 - PB1D10 SINE Alu -21 96 2 1 1065 795 126 39 0 chr9 62921016 62921143 -61155029 + B1_Mus1 SINE Alu 6 137 -11 1 1065 257 303 50 50 chr9 62921020 62921159 -61155013 + B4A SINE B4 94 232 -60 1 1065 726 232 19 50 chr9 62921199 62921358 -61154814 + B3A SINE B2 7 160 -38 1 1065 252 0 0 0 chr9 62921364 62921392 -61154780 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1065 737 224 118 21 chr9 62921394 62921581 -61154591 + ID_B1 SINE B4 13 217 -7 1 1065 464 86 0 14 chr9 62923753 62923824 -61152348 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 1 1065 944 215 65 0 chr9 62923831 62924031 -61152141 - ID_B1 SINE B4 -9 215 3 1 1065 423 0 0 0 chr9 62924156 62924203 -61151969 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1065 1506 221 80 36 chr9 62924819 62925180 -61150992 + MTE2a LTR MaLR 3 379 0 1 1065 990 127 0 0 chr9 62925323 62925481 -61150691 + (TTCC)n Simple_repeat Simple_repeat 3 160 0 1 1065 598 260 32 8 chr9 62925522 62925646 -61150526 - RSINE1 SINE B4 -4 161 35 1 1065 503 269 38 15 chr9 62925646 62925778 -61150394 - ID_B1 SINE B4 -8 216 82 1 1065 381 226 0 12 chr9 62925804 62925889 -61150283 - B3 SINE B2 0 216 133 1 1065 511 258 46 13 chr9 62925903 62926056 -61150116 - MLT1A0 LTR MaLR -204 161 4 1 1065 375 293 0 0 chr9 62926147 62926229 -61149943 - B1F SINE Alu -55 94 13 1 1065 270 309 123 31 chr9 62926385 62926515 -61149657 - RSINE1 SINE B4 -15 150 9 1 1065 373 299 30 106 chr9 62926901 62927137 -61149035 - Charlie16a DNA MER1_type -114 228 11 1 1065 557 173 8 0 chr9 62927270 62927397 -61148775 + (CA)n Simple_repeat Simple_repeat 2 129 0 1 1065 1345 272 36 28 chr9 62927519 62927878 -61148294 + MTE2b LTR MaLR 6 367 -12 1 1065 486 262 29 0 chr9 62928768 62928871 -61147301 + B1F SINE Alu 7 112 -37 1 1065 706 198 127 22 chr9 62928869 62929050 -61147122 + B3 SINE B2 17 216 0 1 1065 410 296 71 8 chr9 62929074 62929200 -61146972 + B3A SINE B2 27 160 -38 1 1065 459 0 0 0 chr9 62929202 62929253 -61146919 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1065 555 219 28 9 chr9 62929283 62929389 -61146783 + B1_Mur1 SINE Alu 1 108 -41 1 1065 234 91 0 0 chr9 62929396 62929429 -61146743 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 1 1065 256 148 201 0 chr9 62929779 62929855 -61146317 + B1_Mus2 SINE Alu 1 96 -53 1 1065 810 30 0 0 chr9 62929877 62929978 -61146194 + (CAAAA)n Simple_repeat Simple_repeat 2 102 0 1 1065 902 216 71 10 chr9 62929978 62930174 -61145998 - B4 SINE B4 -84 208 1 1 1065 1965 146 179 3 chr9 62930474 62930832 -61145340 - MTC LTR MaLR 0 421 1 1 1065 878 222 39 43 chr9 62930899 62931106 -61145066 + B3 SINE B2 10 215 -1 1 1065 1654 16 22 0 chr9 62931143 62931328 -61144844 - B2_Mm1a SINE B2 -4 189 1 1 1065 678 186 57 0 chr9 62931332 62931456 -61144716 - B1_Mur4 SINE Alu -16 134 4 1 1065 198 0 0 0 chr9 62931500 62931522 -61144650 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1065 204 277 28 65 chr9 62931661 62931769 -61144403 + MIR3 SINE MIR 81 184 -24 1 1065 700 111 0 17 chr9 62932409 62932528 -61143644 + (TTCC)n Simple_repeat Simple_repeat 2 118 0 1 1065 250 362 12 0 chr9 62932532 62932612 -61143560 - ID4_ SINE ID -1 82 2 1 1065 851 131 0 14 chr9 62932721 62932868 -61143304 + (TTTC)n Simple_repeat Simple_repeat 1 145 0 1 1065 180 0 0 0 chr9 62932888 62932908 -61143264 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1 1065 1415 73 6 0 chr9 62932909 62933086 -61143086 - B2_Mm1a SINE B2 -15 178 1 1 1065 244 277 261 0 chr9 62933431 62933496 -61142676 - B4 SINE B4 -72 220 139 1 1065 236 28 0 53 chr9 62933559 62933597 -61142575 + (TTTTTG)n Simple_repeat Simple_repeat 5 40 0 1 1065 658 279 24 75 chr9 62933660 62933873 -61142299 - B4 SINE B4 -89 203 2 1 1065 1005 219 70 0 chr9 62933967 62934168 -61142004 - B3 SINE B2 0 216 2 1 1065 613 339 71 38 chr9 62934489 62934854 -61141318 + HAL1 LINE L1 804 1180 -1327 1 1065 418 287 10 0 chr9 62934864 62934965 -61141207 + RSINE1 SINE B4 46 147 -18 1 1065 189 0 0 0 chr9 62934990 62935011 -61141161 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1 1065 21 57 0 0 chr9 62935011 62935046 -61141126 + AT_rich Low_complexity Low_complexity 1 35 0 1 1065 822 316 100 15 chr9 62935098 62935619 -61140553 + HAL1 LINE L1 1248 1812 -695 1 1065 1010 81 81 0 chr9 62935638 62935774 -61140398 + B1_Mus1 SINE Alu 2 148 0 1 1065 225 0 0 0 chr9 62935774 62935799 -61140373 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1065 288 0 0 0 chr9 62936041 62936073 -61140099 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1065 455 95 0 0 chr9 62936073 62936136 -61140036 + B2_Mm2 SINE B2 2 64 -131 1 1065 1205 54 0 7 chr9 62936398 62936547 -61139625 + B1_Mus1 SINE Alu 1 148 0 1 1065 307 237 98 73 chr9 62936962 62937126 -61139046 - B4 SINE B4 -123 169 2 1 1065 353 301 62 47 chr9 62937134 62937199 -61138973 - B4 SINE B4 -159 133 68 1 1065 320 0 25 0 chr9 62937199 62937239 -61138933 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1065 342 0 0 0 chr9 62937239 62937276 -61138896 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1065 353 301 62 47 chr9 62937276 62937338 -61138834 - B4 SINE B4 -225 67 4 1 1065 439 188 167 0 chr9 62937348 62937444 -61138728 + PB1D10 SINE Alu 5 116 -1 1 1065 887 166 14 0 chr9 62937465 62937610 -61138562 - B1_Mur3 SINE Alu -2 147 1 1 1065 36 76 0 19 chr9 62937610 62937694 -61138478 + AT_rich Low_complexity Low_complexity 1 84 0 1 1065 704 185 96 0 chr9 62937694 62937829 -61138343 + B1_Mur3 SINE Alu 2 149 0 1 1065 36 76 0 19 chr9 62937829 62937851 -61138321 + AT_rich Low_complexity Low_complexity 1 21 0 1 1065 388 289 111 43 chr9 62938154 62938389 -61137783 + MIR SINE MIR 12 262 0 1 1065 241 334 35 26 chr9 62938363 62938519 -61137653 - MIR SINE MIR -97 179 23 1 1065 240 100 0 0 chr9 62938644 62938684 -61137488 + (TCTCTG)n Simple_repeat Simple_repeat 6 45 0 1 1065 325 265 0 24 chr9 62938684 62938758 -61137414 - ID SINE ID -150 74 1 1 1065 213 316 0 0 chr9 62940099 62940156 -61136016 + G-rich Low_complexity Low_complexity 1 57 0 1 1065 303 278 79 51 chr9 62940175 62940353 -61135819 - LTR33 LTR ERVL -13 502 320 1 1065 292 258 10 73 chr9 62940403 62940499 -61135673 - B3 SINE B2 -15 201 112 1 1065 378 0 0 0 chr9 62940697 62940739 -61135433 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1065 342 0 0 0 chr9 62940739 62940776 -61135396 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1065 764 149 19 96 chr9 62940810 62940966 -61135206 + B1_Mus1 SINE Alu 5 148 0 1 1065 516 72 0 0 chr9 62941081 62941150 -61135022 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1065 197 86 57 0 chr9 62941142 62941177 -61134995 + (TTCCC)n Simple_repeat Simple_repeat 1 37 0 1 1065 473 208 208 0 chr9 62941216 62941336 -61134836 - B1_Mus1 SINE Alu -2 146 2 1 1065 266 346 35 47 chr9 62941485 62941570 -61134602 + PB1D10 SINE Alu 32 115 -5 1 1065 318 148 0 0 chr9 62941576 62941630 -61134542 + (GAAA)n Simple_repeat Simple_repeat 2 55 0 1 1065 845 247 20 10 chr9 62941638 62941834 -61134338 + B3A SINE B2 1 198 0 1 1065 239 237 51 0 chr9 62941878 62941937 -61134235 + B1_Mus1 SINE Alu 36 97 -51 1 1065 260 180 0 39 chr9 62941907 62941959 -61134213 + ID_B1 SINE B4 175 224 0 1 1065 518 277 105 14 chr9 62942145 62942288 -61133884 + B4A SINE B4 32 187 -105 1 1065 2123 201 81 21 chr9 62942292 62942414 -61133758 + RLTR16 LTR ERVK 6 133 -372 1 1065 555 56 0 0 chr9 62942414 62942485 -61133687 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1065 2123 201 81 21 chr9 62942485 62942834 -61133338 + RLTR16 LTR ERVK 134 504 -1 1 1065 231 229 0 0 chr9 62942834 62942882 -61133290 + B4A SINE B4 182 229 -63 1 1065 1582 261 127 41 chr9 62942882 62943589 -61132583 + Lx8 LINE L1 6698 7465 -8 1 1065 225 267 0 0 chr9 62943692 62943752 -61132420 + B4A SINE B4 216 275 -17 1 1065 393 22 0 0 chr9 62943757 62943803 -61132369 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1065 267 133 0 0 chr9 62943871 62943916 -61132256 + (ATGGTG)n Simple_repeat Simple_repeat 3 47 0 1 1065 642 236 0 77 chr9 62943918 62944074 -61132098 - B1_Mur2 SINE Alu -5 144 1 1 1065 465 19 0 0 chr9 62944090 62944144 -61132028 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1065 464 241 19 102 chr9 62944199 62944356 -61131816 - RSINE1 SINE B4 -2 163 20 1 1065 3832 79 89 28 chr9 62944376 62944939 -61131233 + MT2B LTR ERVL 5 601 0 1 1065 238 184 20 0 chr9 62944965 62945014 -61131158 - L1MB3 LINE L1 -35 6148 6099 1 1065 1068 299 22 39 chr9 62945006 62945414 -61130758 - L1MB3 LINE L1 -201 5982 5582 1 1065 551 301 14 0 chr9 62945643 62945786 -61130386 + RSINE1 SINE B4 3 147 -18 1 1065 752 182 25 11 chr9 62945811 62945977 -61130195 - RLTR16 LTR ERVK -356 212 12 1 1065 351 0 0 0 chr9 62945977 62946016 -61130156 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1065 234 0 0 0 chr9 62946016 62946041 -61130131 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1065 951 219 70 33 chr9 62946104 62946448 -61129724 + MTD LTR MaLR 18 405 -14 1 1065 565 244 68 6 chr9 62946642 62946803 -61129369 + L1MA5 LINE L1 6086 6256 -44 1 1065 209 33 33 0 chr9 62947042 62947072 -61129100 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1065 276 30 0 0 chr9 62947145 62947178 -61128994 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1065 748 258 33 13 chr9 62947215 62947443 -61128729 + B3A SINE B2 1 216 0 1 1065 693 280 64 4 chr9 62947469 62947734 -61128438 + L1MB5 LINE L1 5856 6136 -38 1 1065 271 332 20 59 chr9 62947742 62947809 -61128363 - B2_Mm2 SINE B2 0 195 2 1 1065 709 201 7 7 chr9 62947809 62947944 -61128228 - RSINE1 SINE B4 -28 137 3 1 1065 244 151 0 19 chr9 62947947 62948001 -61128171 + L1MB4 LINE L1 6128 6180 0 1 1065 282 333 9 9 chr9 62948036 62948148 -61128024 + L1MEg LINE L1 17 128 -5956 1 1065 528 250 0 0 chr9 62948272 62948380 -61127792 + B3A SINE B2 3 110 -88 1 1065 262 332 67 36 chr9 62948563 62948757 -61127415 - MER21-int LTR ERV1 -773 3418 3219 1 1065 5167 139 26 25 chr9 62948762 62949669 -61126503 + RMER13B LTR ERVK 1 908 0 1 1065 428 227 0 10 chr9 62949697 62949795 -61126377 + PB1D10 SINE Alu 21 117 0 1 1065 547 318 13 0 chr9 62949799 62949950 -61126222 + B3A SINE B2 1 153 -45 1 1065 333 0 0 0 chr9 62950025 62950062 -61126110 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1065 747 215 7 0 chr9 62950071 62950215 -61125957 + B1_Mus1 SINE Alu 3 147 -1 1 1065 728 316 50 19 chr9 62950227 62950546 -61125626 - MER21-int LTR ERV1 -984 3207 2879 1 1065 681 171 0 0 chr9 62950573 62950748 -61125424 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 1065 282 106 0 0 chr9 62950763 62950810 -61125362 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1065 372 206 0 0 chr9 62950809 62950935 -61125237 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 1065 2295 113 57 16 chr9 62951423 62951791 -61124381 - RLTR9A2 LTR ERVK 0 383 1 1 1065 302 153 53 40 chr9 62951791 62951866 -61124306 - ETnERV2-int LTR ERVK 0 7406 7331 1 1065 280 284 45 18 chr9 62952090 62952201 -61123971 - ETnERV2-int LTR ERVK -987 6419 6306 1 1065 1112 245 63 75 chr9 62952509 62952871 -61123301 - MTE2a LTR MaLR -2 377 20 1 1065 194 220 16 63 chr9 62952876 62952939 -61123233 + L2 LINE L2 2825 2884 -535 1 1065 1286 187 25 68 chr9 62954099 62954420 -61121752 - ORR1C2 LTR MaLR 0 384 78 1 1065 512 302 35 50 chr9 62954441 62954640 -61121532 - B3A SINE B2 -1 197 2 1 1065 616 181 15 42 chr9 62954640 62954722 -61121450 - ORR1D1 LTR MaLR -293 77 1 1 1065 716 235 36 49 chr9 62954919 62955143 -61121029 + ID_B1 SINE B4 4 224 0 1 1065 1741 206 55 17 chr9 62955322 62955727 -61120445 - MTD LTR MaLR -8 411 1 1 1065 21 57 0 0 chr9 62955727 62955762 -61120410 + AT_rich Low_complexity Low_complexity 1 35 0 1 1065 331 226 108 88 chr9 62955771 62956008 -61120164 + L1MC2 LINE L1 5715 5967 -1818 1 1065 665 241 20 74 chr9 62956071 62956252 -61119920 - MTE2b LTR MaLR -36 343 91 1 1065 1146 41 7 0 chr9 62956252 62956398 -61119774 + B1_Mus2 SINE Alu 1 147 0 1 1065 665 274 20 106 chr9 62956398 62956502 -61119670 - MTE2b LTR MaLR -289 90 1 1 1065 216 289 206 28 chr9 62957304 62957411 -61118761 + MIR SINE MIR 28 153 -109 1 1065 281 320 82 38 chr9 62957594 62957753 -61118419 - MIR SINE MIR -79 183 18 1 1065 637 234 20 7 chr9 62957832 62957978 -61118194 + B1F SINE Alu 2 149 0 1 1065 387 188 59 0 chr9 62958006 62958091 -61118081 + RSINE1 SINE B4 44 133 -32 1 1065 291 114 0 0 chr9 62958100 62958144 -61118028 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1 1065 454 205 121 16 chr9 62958145 62958269 -61117903 - B1_Mur2 SINE Alu -3 146 10 1 1065 365 364 17 0 chr9 62958374 62958492 -61117680 + L1MEg LINE L1 1863 1982 -4102 1 1065 603 78 0 0 chr9 62958965 62959055 -61117117 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 1065 1517 38 0 0 chr9 62959383 62959568 -61116604 - B2_Mm1a SINE B2 -8 185 1 1 1065 438 153 35 59 chr9 62959890 62960008 -61116164 - MLT1J LTR MaLR -346 166 23 1 1065 800 127 14 50 chr9 62960017 62960158 -61116014 + B1_Mur4 SINE Alu 1 136 -14 1 1065 351 0 0 0 chr9 62960160 62960199 -61115973 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 1065 392 0 0 20 chr9 62960707 62960756 -61115416 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1065 1046 202 34 10 chr9 62960958 62961163 -61115009 + B3 SINE B2 1 210 -6 1 1065 497 263 86 38 chr9 62961180 62961366 -61114806 - B3A SINE B2 0 198 4 1 1065 1796 162 40 40 chr9 62961411 62961783 -61114389 + ORR1D1 LTR MaLR 3 374 0 1 1065 1736 123 106 21 chr9 62961884 62962223 -61113949 - RLTR9A LTR ERVK 0 368 1 1 1065 330 192 40 27 chr9 62962223 62962298 -61113874 - ETnERV2-int LTR ERVK 0 7406 7331 1 1065 1418 206 3 27 chr9 62962697 62962997 -61113175 - ETnERV2-int LTR ERVK -1195 6211 5919 1 1065 369 265 60 8 chr9 62963249 62963375 -61112797 - ORR1D2 LTR MaLR -221 138 1 1 1065 513 260 7 30 chr9 62963375 62963504 -61112668 - RSINE1 SINE B4 -29 136 11 1 1065 1539 259 63 2 chr9 62963635 62964114 -61112058 - L1MCa LINE L1 -3069 3252 2745 1 1065 23 0 0 0 chr9 62964128 62964151 -61112021 + AT_rich Low_complexity Low_complexity 1 23 0 1 1065 2520 41 161 9 chr9 62964166 62964513 -61111659 - MTB LTR MaLR 0 400 1 1 1065 548 203 248 0 chr9 62964515 62964668 -61111504 - B3 SINE B2 -24 192 2 1 1065 797 276 55 19 chr9 62964670 62964959 -61111213 - L1MCa LINE L1 -3567 2754 2454 1 1065 268 297 0 19 chr9 62965723 62965826 -61110346 - L1MCa LINE L1 -4166 2342 2242 1 1065 273 181 155 12 chr9 62965830 62965914 -61110258 - PB1 SINE Alu -6 121 26 1 1065 215 194 0 0 chr9 62965986 62966022 -61110150 + polypyrimidine Low_complexity Low_complexity 3 38 0 1 1065 1276 231 65 26 chr9 62966095 62966446 -61109726 - ORR1D2 LTR MaLR -5 365 1 1 1065 1197 148 37 9 chr9 62966527 62966745 -61109427 + URR1B DNA MER1_type 2 225 0 1 1065 493 300 45 40 chr9 62966747 62966834 -61109338 - L1MCa LINE L1 -5055 1453 1367 1 1065 832 184 0 26 chr9 62966834 62966985 -61109187 - B1_Mur2 SINE Alu -1 148 2 1 1065 493 300 45 40 chr9 62966985 62967095 -61109077 - L1MCa LINE L1 -5142 1366 1255 1 1065 207 0 0 0 chr9 62967121 62967144 -61109028 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1 1065 330 292 0 0 chr9 62967359 62967448 -61108724 + CT-rich Low_complexity Low_complexity 6 94 0 1 1065 253 218 36 18 chr9 62967592 62967648 -61108524 + RSINE1 SINE B4 97 153 -12 1 1065 519 56 0 0 chr9 62967652 62967723 -61108449 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1065 565 89 0 0 chr9 62967746 62967825 -61108347 + B2_Mm2 SINE B2 3 81 -114 1 1065 387 109 310 52 chr9 62967850 62967966 -61108206 - B2_Mm1t SINE B2 0 193 48 1 1065 800 87 9 0 chr9 62968050 62968165 -61108007 - B2_Mm1t SINE B2 -76 117 2 1 1065 437 233 112 41 chr9 62968848 62969018 -61107154 - MTE2b LTR MaLR -15 364 183 1 1065 812 147 0 20 chr9 62969167 62969313 -61106859 - URR1B DNA MER1_type 0 225 83 1 1065 411 229 43 67 chr9 62969313 62969324 -61106848 + CYRA11_Mm Unknown Y-chromosome 214 322 -295 1 1065 303 299 50 20 chr9 62969361 62969460 -61106712 - MTE2b LTR MaLR -308 111 10 1 1065 371 202 58 39 chr9 62969471 62969574 -61106598 + PB1D9 SINE Alu 3 107 -13 1 1065 261 0 0 0 chr9 62969574 62969603 -61106569 + (CAA)n Simple_repeat Simple_repeat 1 29 0 1 1065 673 269 28 19 chr9 62969663 62969875 -61106297 + B3 SINE B2 1 214 -2 1 1065 1091 266 37 12 chr9 62970053 62970376 -61105796 + L1ME4a LINE L1 5508 5838 -286 1 1065 212 359 0 0 chr9 62970472 62970550 -61105622 - MIRb SINE MIR -59 209 132 1 1065 870 102 94 0 chr9 62970652 62970780 -61105392 - B1_Mur4 SINE Alu -10 140 1 1 1065 700 230 82 0 chr9 62970802 62970998 -61105174 - B3 SINE B2 0 216 5 1 1065 320 256 17 29 chr9 62971031 62971109 -61105063 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 1 1065 549 170 62 0 chr9 62971109 62971221 -61104951 - PB1D9 SINE Alu -1 119 1 1 1065 320 256 17 29 chr9 62971221 62971315 -61104857 + (TTTG)n Simple_repeat Simple_repeat 2 96 0 1 1065 440 167 184 10 chr9 62972637 62972740 -61103432 + B3A SINE B2 1 121 -77 1 1065 426 20 0 0 chr9 62972770 62972821 -61103351 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1065 471 235 154 19 chr9 62973333 62973489 -61102683 + ID_B1 SINE B4 48 224 0 1 1065 840 212 10 25 chr9 62973506 62973704 -61102468 + B3A SINE B2 3 197 -1 1 1065 816 127 104 7 chr9 62973704 62973838 -61102334 + B1_Mus1 SINE Alu 1 148 0 1 1065 520 267 44 0 chr9 62974238 62974373 -61101799 + MTE-int LTR MaLR 1220 1360 -220 1 1065 381 187 0 0 chr9 62974462 62974537 -61101635 + T-rich Low_complexity Low_complexity 1 75 0 1 1065 496 64 115 0 chr9 62974537 62974615 -61101557 - B1_Mus2 SINE Alu 0 147 61 1 1065 227 184 0 0 chr9 62974610 62974648 -61101524 - B3A SINE B2 -152 46 9 1 1065 1083 64 0 0 chr9 62974705 62974846 -61101326 + B1_Mus1 SINE Alu 3 143 -5 1 1065 902 138 121 15 chr9 62975247 62975330 -61100842 + Lx LINE L1 6436 6518 -136 1 1065 225 0 0 0 chr9 62975330 62975355 -61100817 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 1 1065 902 138 121 15 chr9 62975355 62975469 -61100703 + Lx LINE L1 6519 6653 -1 1 1065 355 299 60 107 chr9 62975474 62975610 -61100562 + B4A SINE B4 82 212 -80 1 1065 777 204 42 26 chr9 62975610 62975801 -61100371 + B3A SINE B2 3 196 -2 1 1065 355 299 60 107 chr9 62975801 62975814 -61100358 + B4A SINE B4 213 224 -68 1 1065 796 156 7 28 chr9 62975834 62975979 -61100193 + B1_Mur3 SINE Alu 1 142 -7 1 1065 1083 82 0 0 chr9 62975988 62976135 -61100037 + B1_Mus2 SINE Alu 1 147 0 1 1065 261 146 0 0 chr9 62976156 62976204 -61099968 + (GGA)n Simple_repeat Simple_repeat 2 49 0 1 1065 667 245 173 5 chr9 62976227 62976424 -61099748 + B4A SINE B4 3 232 -60 1 1065 658 241 39 39 chr9 62976420 62976601 -61099571 + B3A SINE B2 10 190 -8 1 1065 225 250 0 122 chr9 62977819 62977901 -61098271 - MLT2B1 LTR ERVL -261 259 188 1 1065 995 94 0 7 chr9 62977933 62978073 -61098099 + B1_Mm SINE Alu 1 139 -8 1 1065 180 0 0 0 chr9 62978075 62978095 -61098077 + (CAT)n Simple_repeat Simple_repeat 1 20 0 1 1065 310 267 11 34 chr9 62978469 62978558 -61097614 - MLT1A1 LTR MaLR -2 406 320 1 1065 1332 66 0 37 chr9 62978678 62978866 -61097306 + B2_Mm2 SINE B2 2 182 -13 1 1065 669 211 58 52 chr9 62979107 62979262 -61096910 - RSINE1 SINE B4 0 165 10 1 1065 198 186 15 92 chr9 62980440 62980505 -61095667 + MIRc SINE MIR 107 166 -102 1 1065 959 0 0 0 chr9 62981089 62981196 -61094976 + U6 snRNA snRNA 1 107 0 1 1065 604 255 7 0 chr9 62981369 62981510 -61094662 - ID_B1 SINE B4 -1 223 82 1 1065 219 36 0 0 chr9 62986102 62986130 -61090042 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1 1065 301 178 48 12 chr9 62986955 62987044 -61089128 - MIR SINE MIR -103 165 79 1 1065 229 135 39 0 chr9 62987166 62987218 -61088954 + (CCCA)n Simple_repeat Simple_repeat 3 56 0 1 1065 288 0 0 0 chr9 62987247 62987279 -61088893 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 1065 24 32 0 0 chr9 62987732 62987763 -61088409 + AT_rich Low_complexity Low_complexity 1 31 0 1 1065 223 290 16 0 chr9 62987972 62988034 -61088138 + C-rich Low_complexity Low_complexity 4 66 0 1 1065 461 163 11 0 chr9 62988642 62988734 -61087438 + GA-rich Low_complexity Low_complexity 2 94 0 1 1065 209 338 25 0 chr9 62990951 62991031 -61085141 + CT-rich Low_complexity Low_complexity 4 85 0 1 1065 215 146 0 18 chr9 62992906 62992962 -61083210 + (CCG)n Simple_repeat Simple_repeat 3 57 0 1 1065 294 270 8 90 chr9 62994645 62994767 -61081405 - MIRb SINE MIR -117 151 40 1 1065 220 215 23 31 chr9 62994927 62995002 -61081170 + GA-rich Low_complexity Low_complexity 1 74 0 1 1065 204 206 15 45 chr9 62996666 62996732 -61079440 + (CGGG)n Simple_repeat Simple_repeat 1 64 0 1 1065 31 58 0 0 chr9 62997063 62997115 -61079057 + GC_rich Low_complexity Low_complexity 1 52 0 1 1065 393 22 0 0 chr9 62997776 62997822 -61078350 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1065 23 54 0 0 chr9 62998044 62998081 -61078091 + GC_rich Low_complexity Low_complexity 1 37 0 1 1065 225 0 0 0 chr9 63001100 63001125 -61075047 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1 1065 457 195 190 8 chr9 63001361 63001479 -61074693 + B1F SINE Alu 2 135 -13 2 1065 1252 147 212 28 chr9 63001488 63001775 -61074397 + ORR1D1 LTR MaLR 3 342 -32 3 1065 1014 63 0 0 chr9 63001852 63001978 -61074194 + B1_Mm SINE Alu 22 147 0 4 1065 228 317 18 73 chr9 63002026 63002135 -61074037 - MER96 DNA hAT -11 164 62 5 1065 903 251 102 149 chr9 63002394 63002720 -61073452 - L1MB8 LINE L1 -81 6097 5825 6 1065 506 325 32 26 chr9 63002720 63002875 -61073297 - RSINE1 SINE B4 -7 158 3 7 1065 903 252 98 138 chr9 63002875 63003103 -61073069 - L1MB8 LINE L1 -354 5824 5567 6 1065 351 145 0 0 chr9 63003409 63003478 -61072694 + (TG)n Simple_repeat Simple_repeat 1 69 0 8 1065 335 309 17 95 chr9 63003486 63003665 -61072507 - RSINE1 SINE B4 0 165 1 9 1065 22 0 0 0 chr9 63003836 63003858 -61072314 + AT_rich Low_complexity Low_complexity 1 22 0 1 1065 799 229 20 9 chr9 63003887 63004050 -61072122 + B3A SINE B2 2 161 -37 1 1065 288 0 0 0 chr9 63004050 63004082 -61072090 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1065 207 0 0 0 chr9 63004082 63004104 -61072068 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1065 594 235 49 81 chr9 63004104 63004124 -61072048 + B2_Mm2 SINE B2 161 179 -16 1 1065 549 42 0 0 chr9 63004149 63004221 -61071951 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 1065 315 296 20 10 chr9 63004223 63004322 -61071850 - PB1D10 SINE Alu -16 101 2 1 1065 1215 61 0 0 chr9 63004349 63004496 -61071676 - B1_Mus1 SINE Alu 0 148 2 1 1065 405 272 16 31 chr9 63004498 63004627 -61071545 - L1M5 LINE L1 -1089 5057 4931 1 1065 491 287 20 6 chr9 63005227 63005382 -61070790 - MIR SINE MIR -106 156 7 1 1065 318 291 25 0 chr9 63005474 63005553 -61070619 + ID SINE ID 1 81 -143 1 1065 32 26 0 0 chr9 63005593 63005632 -61070540 + AT_rich Low_complexity Low_complexity 1 39 0 2 1065 463 297 142 31 chr9 63006252 63006506 -61069666 - B4A SINE B4 -10 282 1 2 1065 190 120 39 39 chr9 63007797 63007849 -61068323 + (CATG)n Simple_repeat Simple_repeat 3 54 0 2 1065 405 326 0 0 chr9 63007851 63007986 -61068186 + (TG)n Simple_repeat Simple_repeat 2 136 0 2 1065 447 305 23 24 chr9 63008312 63008520 -61067652 + MIR SINE MIR 24 230 -38 2 1065 231 269 24 82 chr9 63008554 63008639 -61067533 + BC1_Mm scRNA scRNA 2 81 -71 2 1065 613 247 0 107 chr9 63008567 63008744 -61067428 + ID_B1 SINE B4 16 173 -51 2 1065 250 310 9 123 chr9 63008642 63008756 -61067416 + PB1D10 SINE Alu 5 105 -12 2 1065 347 244 12 12 chr9 63009379 63009462 -61066710 - B4A SINE B4 -13 279 197 2 1065 506 306 147 23 chr9 63010137 63010395 -61065777 - B4A SINE B4 -2 290 1 2 1065 368 291 55 85 chr9 63010447 63010507 -61065665 - ID_B1 SINE B4 -11 213 157 3 1065 1129 50 50 0 chr9 63010507 63010648 -61065524 - B1_Mus1 SINE Alu 0 148 1 3 1065 368 291 55 85 chr9 63010648 63010752 -61065420 - ID_B1 SINE B4 -68 156 54 3 1065 619 228 8 31 chr9 63012046 63012173 -61063999 + ID_B1 SINE B4 1 124 -100 3 1065 511 165 226 24 chr9 63012242 63012366 -61063806 + B1_Mur4 SINE Alu 2 150 0 3 1065 192 49 47 47 chr9 63012411 63012454 -61063718 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1065 513 325 12 6 chr9 63012551 63012673 -61063499 + RSINE1 SINE B4 3 124 -41 3 1065 338 100 17 0 chr9 63012673 63012733 -61063439 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1065 513 325 12 6 chr9 63012733 63012771 -61063401 + RSINE1 SINE B4 125 163 -2 3 1065 228 200 0 0 chr9 63014867 63014917 -61061255 + GA-rich Low_complexity Low_complexity 2 51 0 3 1065 194 213 43 0 chr9 63015778 63015825 -61060347 - MIR SINE MIR -112 150 102 3 1065 213 39 0 0 chr9 63016057 63016083 -61060089 + (CAG)n Simple_repeat Simple_repeat 3 28 0 3 1065 563 224 48 20 chr9 63017055 63017201 -61058971 - B3 SINE B2 0 216 67 4 1065 441 273 27 9 chr9 63017208 63017319 -61058853 + B1F SINE Alu 15 127 -22 4 1065 474 18 0 0 chr9 63017363 63017418 -61058754 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 4 1065 332 258 258 26 chr9 63017852 63018007 -61058165 + B3A SINE B2 1 191 -7 4 1065 336 294 42 99 chr9 63017985 63018213 -61057959 + MT2B LTR ERVL 30 264 -320 4 1065 821 222 0 0 chr9 63018104 63018248 -61057924 + B1_Mur1 SINE Alu 6 149 0 4 1065 436 93 0 26 chr9 63018324 63018401 -61057771 + (GGA)n Simple_repeat Simple_repeat 2 76 0 4 1065 207 0 0 0 chr9 63018399 63018422 -61057750 + (CAG)n Simple_repeat Simple_repeat 2 24 0 4 1065 676 255 28 19 chr9 63018842 63019054 -61057118 - ID_B1 SINE B4 -9 215 2 4 1065 26 30 0 0 chr9 63019160 63019193 -61056979 + AT_rich Low_complexity Low_complexity 1 33 0 4 1065 189 0 0 0 chr9 63019386 63019407 -61056765 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1065 441 36 0 0 chr9 63019408 63019463 -61056709 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1065 664 255 87 10 chr9 63019471 63019677 -61056495 - B4A SINE B4 -52 240 19 5 1065 354 23 0 0 chr9 63019743 63019786 -61056386 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 1065 318 50 0 0 chr9 63019786 63019826 -61056346 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1065 218 339 0 0 chr9 63020133 63020195 -61055977 + CT-rich Low_complexity Low_complexity 3 64 0 5 1065 315 0 0 0 chr9 63021255 63021290 -61054882 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 5 1065 575 318 19 19 chr9 63021294 63021448 -61054724 - RSINE1 SINE B4 -2 163 10 5 1065 242 271 71 30 chr9 63021575 63021674 -61054498 - MIRc SINE MIR -74 194 92 5 1065 250 343 131 14 chr9 63021754 63021899 -61054273 + ID_B1 SINE B4 40 201 -23 5 1065 320 322 58 3 chr9 63021798 63021932 -61054240 + PB1D10 SINE Alu 7 150 0 6 1065 354 23 0 0 chr9 63022095 63022138 -61054034 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1065 387 227 109 67 chr9 63023085 63023250 -61052922 + L1M5 LINE L1 5319 5490 -634 6 1065 713 302 0 0 chr9 63023352 63023514 -61052658 - RSINE1 SINE B4 0 165 4 6 1065 1183 48 7 14 chr9 63025211 63025359 -61050813 + B1_Mus1 SINE Alu 1 147 -1 6 1065 607 263 195 26 chr9 63025421 63025616 -61050556 + B4 SINE B4 3 230 -62 6 1065 2651 140 15 2 chr9 63025626 63026033 -61050139 - MTC LTR MaLR 0 421 10 6 1065 417 20 0 0 chr9 63026128 63026178 -61049994 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1065 1036 234 9 5 chr9 63026832 63027051 -61049121 - ID_B1 SINE B4 -4 220 1 6 1065 601 232 16 8 chr9 63027276 63027402 -61048770 - ID_B1 SINE B4 -14 210 84 6 1065 275 333 45 36 chr9 63028519 63028631 -61047541 - PB1 SINE Alu -2 125 13 7 1065 214 281 43 86 chr9 63029040 63029110 -61047062 - L2c LINE L2 -41 3346 3280 7 1065 528 269 103 7 chr9 63032640 63032786 -61043386 + RSINE1 SINE B4 6 165 0 7 1065 189 0 0 0 chr9 63032942 63032963 -61043209 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1065 217 200 0 0 chr9 63033515 63033550 -61042622 + polypurine Low_complexity Low_complexity 1 35 0 7 1065 381 248 17 88 chr9 63035424 63035553 -61040619 - Charlie24 DNA MER1_type -21 2429 2330 7 1065 1254 154 19 9 chr9 63036552 63036762 -61039410 - URR1B DNA MER1_type 0 225 14 7 1065 221 196 54 0 chr9 63037112 63037168 -61039004 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1065 577 236 108 84 chr9 63037175 63037263 -61038909 - B4A SINE B4 -2 290 210 7 1065 4087 123 106 18 chr9 63037263 63037940 -61038232 + RMER19A LTR ERVK 1 737 0 7 1065 577 236 108 84 chr9 63037940 63038054 -61038118 - B4A SINE B4 -83 209 83 7 1065 578 218 391 0 chr9 63038087 63038279 -61037893 - B4A SINE B4 0 292 26 8 1065 1152 181 10 25 chr9 63038327 63038531 -61037641 - B3 SINE B2 -12 204 4 8 1065 648 38 0 0 chr9 63038534 63038613 -61037559 + (TATG)n Simple_repeat Simple_repeat 2 80 0 8 1065 661 268 67 0 chr9 63038614 63038778 -61037394 - B3A SINE B2 -14 184 10 8 1065 1229 61 0 0 chr9 63039031 63039179 -61036993 - B1_Mus1 SINE Alu 0 148 1 8 1065 1523 43 5 11 chr9 63040100 63040288 -61035884 + B2_Mm2 SINE B2 2 188 -7 8 1065 208 139 0 0 chr9 63041319 63041355 -61034817 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1065 262 329 0 0 chr9 63041550 63041632 -61034540 + ID4_ SINE ID 2 83 0 8 1065 870 261 19 5 chr9 63041721 63041929 -61034243 - ID_B1 SINE B4 -12 212 2 8 1065 1372 98 16 0 chr9 63042227 63042410 -61033762 + B2_Mm2 SINE B2 1 186 -9 8 1065 644 242 126 21 chr9 63042462 63042652 -61033520 - B3 SINE B2 -6 210 1 9 1065 300 146 11 89 chr9 63045020 63045110 -61031062 + G-rich Low_complexity Low_complexity 5 87 0 9 1066 483 18 0 0 chr9 63047090 63047146 -61029026 + (TC)n Simple_repeat Simple_repeat 1 56 0 9 1066 597 261 43 0 chr9 63047168 63047306 -61028866 + B1_Mur2 SINE Alu 1 144 -5 9 1066 527 227 0 18 chr9 63047519 63047631 -61028541 - PB1D9 SINE Alu -6 114 5 9 1066 366 23 0 0 chr9 63048336 63048379 -61027793 + (GAA)n Simple_repeat Simple_repeat 2 44 0 9 1066 594 0 0 0 chr9 63048379 63048445 -61027727 + (TAG)n Simple_repeat Simple_repeat 2 67 0 9 1066 1145 70 0 0 chr9 63048801 63048944 -61027228 + B1_Mm SINE Alu 4 146 -1 9 1066 432 0 0 0 chr9 63049207 63049255 -61026917 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1066 270 0 0 0 chr9 63049588 63049618 -61026554 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1066 669 188 107 53 chr9 63049859 63050028 -61026144 + B3 SINE B2 39 216 0 1 1066 371 256 210 34 chr9 63050780 63051018 -61025154 + B4A SINE B4 1 280 -12 1 1066 222 37 0 0 chr9 63051107 63051134 -61025038 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1 1066 464 179 40 8 chr9 63051134 63051231 -61024941 - B1_Mur2 SINE Alu -10 139 2 1 1066 737 260 71 9 chr9 63051676 63051886 -61024286 + ID_B1 SINE B4 2 224 0 1 1066 653 333 25 56 chr9 63051991 63052277 -61023895 + B4A SINE B4 6 282 -10 1 1066 316 269 0 143 chr9 63056061 63056152 -61020020 - ID_B1 SINE B4 -2 222 145 1 1066 30 45 0 0 chr9 63056198 63056242 -61019930 + AT_rich Low_complexity Low_complexity 1 44 0 1 1066 426 213 117 27 chr9 63056257 63056368 -61019804 - B3A SINE B2 -77 121 1 1 1066 1214 54 0 0 chr9 63056466 63056614 -61019558 + B1_Mus1 SINE Alu 1 148 0 1 1066 282 143 0 0 chr9 63056614 63056677 -61019495 + (A)n Simple_repeat Simple_repeat 1 63 0 1 1066 270 220 34 0 chr9 63056714 63056773 -61019399 + B1F2 SINE Alu 1 61 -88 1 1066 263 313 36 0 chr9 63056774 63056857 -61019315 - L1M4 LINE L1 -546 5632 5547 1 1066 268 185 225 12 chr9 63056965 63057106 -61019066 - L1M4 LINE L1 -766 5374 5203 1 1066 236 260 0 0 chr9 63057120 63057170 -61019002 - PB1D10 SINE Alu -30 87 38 1 1066 586 238 126 18 chr9 63057331 63057510 -61018662 - B3A SINE B2 -11 182 1 1 1066 434 256 29 50 chr9 63057512 63057652 -61018520 - L1M4 LINE L1 -1461 4685 4549 1 1066 22 0 0 0 chr9 63057655 63057677 -61018495 + AT_rich Low_complexity Low_complexity 1 22 0 1 1066 601 288 0 30 chr9 63057703 63057871 -61018301 - RSINE1 SINE B4 0 165 3 1 1066 435 204 35 26 chr9 63058322 63058438 -61017734 - L1M4 LINE L1 -2258 3888 3772 1 1066 937 227 143 46 chr9 63058441 63058743 -61017429 - MTD LTR MaLR -13 406 60 1 1066 234 62 0 0 chr9 63058743 63058775 -61017397 + (TATG)n Simple_repeat Simple_repeat 2 33 0 1 1066 937 227 143 46 chr9 63058775 63058842 -61017330 - MTD LTR MaLR -360 59 1 1 1066 327 261 107 56 chr9 63058889 63058941 -61017231 - L1M4 LINE L1 -2393 3753 3699 1 1066 636 264 25 19 chr9 63058941 63059103 -61017069 - RSINE1 SINE B4 0 165 3 1 1066 327 261 107 56 chr9 63059103 63059302 -61016870 - L1M4 LINE L1 -2448 3698 3489 1 1066 198 0 0 0 chr9 63059393 63059415 -61016757 + (CTACT)n Simple_repeat Simple_repeat 5 26 0 1 1066 359 216 0 0 chr9 63059549 63059623 -61016549 - 7SK RNA RNA -191 140 67 1 1066 435 19 0 0 chr9 63059647 63059699 -61016473 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1066 1268 45 20 91 chr9 63061747 63061944 -61014228 + B2_Mm2 SINE B2 2 184 -11 1 1066 576 250 55 60 chr9 63062401 63062584 -61013588 - B3A SINE B2 -15 183 2 1 1066 291 235 47 84 chr9 63062809 63062916 -61013256 - PB1D7 SINE Alu 0 120 18 1 1066 216 0 0 0 chr9 63064053 63064077 -61012095 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1066 294 192 82 0 chr9 63066167 63066240 -61009932 - PB1D10 SINE Alu -20 97 19 1 1066 716 230 6 24 chr9 63066884 63067049 -61009123 + RSINE1 SINE B4 3 164 -1 1 1066 23 0 0 0 chr9 63067126 63067149 -61009023 + AT_rich Low_complexity Low_complexity 1 23 0 1 1066 280 45 22 43 chr9 63069764 63069810 -61006362 + PB1D9 SINE Alu 64 108 -12 1 1066 207 146 0 0 chr9 63070579 63070620 -61005552 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1066 855 128 0 32 chr9 63070677 63070862 -61005310 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1066 1993 135 144 17 chr9 63071579 63071940 -61004232 + MTB_Mm LTR MaLR 1 407 0 1 1066 986 192 57 5 chr9 63072049 63072243 -61003929 + B3 SINE B2 3 206 -10 1 1066 1159 82 0 0 chr9 63074574 63074721 -61001451 - B1_Mus2 SINE Alu 0 147 1 1 1066 21 0 0 0 chr9 63074733 63074754 -61001418 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 636 206 61 0 chr9 63074791 63074922 -61001250 + B1_Mur1 SINE Alu 11 149 0 1 1066 771 231 25 12 chr9 63074924 63075086 -61001086 - B3A SINE B2 -30 168 5 1 1066 707 259 40 0 chr9 63075115 63075289 -61000883 - B3A SINE B2 -16 182 2 1 1066 288 229 14 14 chr9 63075516 63075587 -61000585 - ID4 SINE ID -11 72 2 1 1066 974 215 28 19 chr9 63075873 63076086 -61000086 - B3 SINE B2 0 216 2 1 1066 549 199 98 14 chr9 63076087 63076230 -60999942 - B4 SINE B4 -62 230 76 1 1066 486 193 8 81 chr9 63076903 63077027 -60999145 + PB1D10 SINE Alu 3 117 0 1 1066 525 198 18 9 chr9 63079520 63079632 -60996540 - ID_B1 SINE B4 -1 223 111 1 1066 920 225 31 5 chr9 63080905 63081097 -60995075 - B3A SINE B2 0 198 2 1 1066 420 223 9 19 chr9 63081564 63081669 -60994503 - RSINE1 SINE B4 -28 137 34 1 1066 380 192 222 0 chr9 63083858 63083957 -60992215 - B1_Mm SINE Alu -6 141 21 1 1066 435 293 0 17 chr9 63085363 63085481 -60990691 + PB1D10 SINE Alu 1 116 -1 1 1066 369 0 0 0 chr9 63087308 63087349 -60988823 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1066 351 0 0 0 chr9 63087349 63087387 -60988785 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1066 264 210 16 16 chr9 63089040 63089103 -60987069 - MIR SINE MIR -82 126 64 1 1066 441 0 0 0 chr9 63090274 63090323 -60985849 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1066 300 238 69 0 chr9 63092143 63092244 -60983928 + MLT1H1 LTR MaLR 440 547 -8 1 1066 191 245 127 36 chr9 63092623 63092733 -60983439 + MIR SINE MIR 33 152 -56 1 1066 763 190 21 14 chr9 63093652 63093787 -60982385 + B1_Mus2 SINE Alu 3 138 -9 1 1066 279 0 0 0 chr9 63093787 63093818 -60982354 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1066 503 231 19 0 chr9 63094819 63094927 -60981245 + B1F2 SINE Alu 40 149 0 1 1066 712 182 0 31 chr9 63095414 63095544 -60980628 - B1_Mus2 SINE Alu -16 131 6 1 1066 235 286 0 0 chr9 63095585 63095634 -60980538 - B3 SINE B2 -86 130 82 1 1066 470 139 0 0 chr9 63095770 63095842 -60980330 - B3 SINE B2 -143 73 2 1 1066 589 190 32 24 chr9 63096020 63096144 -60980028 - B1_Mur3 SINE Alu -21 128 4 1 1066 311 272 119 2 chr9 63096475 63096579 -60979593 + B1F2 SINE Alu 14 128 -21 1 1066 1714 228 101 6 chr9 63097189 63097666 -60978506 + RMER5 LTR ERV1 13 534 0 1 1066 363 231 171 16 chr9 63099111 63099234 -60976938 - B1_Mur3 SINE Alu -1 148 7 1 1066 372 289 84 32 chr9 63099274 63099428 -60976744 - RSINE1 SINE B4 -2 163 2 1 1066 574 233 0 0 chr9 63099435 63099551 -60976621 - PB1D10 SINE Alu 0 117 2 1 1066 264 122 0 0 chr9 63101085 63101126 -60975046 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1066 1232 54 0 0 chr9 63101126 63101274 -60974898 - B1_Mus1 SINE Alu 0 148 1 1 1066 183 80 0 0 chr9 63101366 63101391 -60974781 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1 1066 867 243 102 40 chr9 63101561 63101835 -60974337 - B4 SINE B4 0 292 2 1 1066 345 214 29 0 chr9 63101854 63101924 -60974248 - PB1D10 SINE Alu -28 89 18 1 1066 852 202 121 0 chr9 63103045 63103243 -60972929 - ID_B1 SINE B4 -1 223 2 1 1066 315 49 0 0 chr9 63104984 63105025 -60971147 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1066 255 169 67 17 chr9 63105771 63105831 -60970341 + B4A SINE B4 161 223 -69 1 1066 273 115 56 37 chr9 63107053 63107107 -60969065 - L1MEg LINE L1 -5172 912 858 1 1066 652 246 60 44 chr9 63107141 63107324 -60968848 - B3A SINE B2 -5 193 8 1 1066 356 225 12 0 chr9 63108773 63108853 -60967319 + RSINE1 SINE B4 3 83 -82 1 1066 767 143 55 35 chr9 63109034 63109179 -60966993 + B1_Mus1 SINE Alu 1 148 0 1 1066 375 23 0 0 chr9 63111380 63111424 -60964748 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1066 195 220 60 0 chr9 63112172 63112222 -60963950 + L2a LINE L2 3301 3353 -73 1 1066 203 370 0 0 chr9 63113065 63113138 -60963034 + L2a LINE L2 3065 3137 -289 1 1066 216 67 0 0 chr9 63114099 63114129 -60962043 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1066 1183 158 22 18 chr9 63114296 63114521 -60961651 - URR1A DNA MER1_type 0 226 1 1 1066 408 253 22 0 chr9 63116306 63116397 -60959775 + PB1 SINE Alu 25 117 -10 1 1066 352 292 0 25 chr9 63116646 63116759 -60959413 + B1F1 SINE Alu 11 113 -7 1 1066 733 280 54 76 chr9 63116798 63117313 -60958859 + L1MB8 LINE L1 5679 6179 0 1 1066 288 0 0 0 chr9 63117478 63117510 -60958662 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1066 24 32 0 0 chr9 63117531 63117562 -60958610 + AT_rich Low_complexity Low_complexity 1 31 0 1 1066 610 230 39 19 chr9 63118255 63118410 -60957762 - RSINE1 SINE B4 -4 161 4 1 1066 336 253 0 8 chr9 63119057 63119148 -60957024 - ID4 SINE ID -56 96 9 1 1066 286 316 32 32 chr9 63119404 63119558 -60956614 - MIRb SINE MIR -25 243 90 1 1066 246 361 19 0 chr9 63119934 63120042 -60956130 + MIRb SINE MIR 94 203 -65 1 1066 2288 176 42 2 chr9 63121029 63121434 -60954738 + MTC LTR MaLR 1 421 0 1 1066 1216 312 45 11 chr9 63121437 63121988 -60954184 - L1MD1 LINE L1 -17 6225 5656 1 1066 344 271 12 0 chr9 63123490 63123575 -60952597 + RSINE1 SINE B4 3 88 -77 1 1066 31 26 0 0 chr9 63123612 63123650 -60952522 + AT_rich Low_complexity Low_complexity 1 38 0 1 1066 1607 42 0 5 chr9 63123657 63123846 -60952326 - B2_Mm2 SINE B2 -5 190 3 1 1066 243 255 59 96 chr9 63124144 63124339 -60951833 - L1M5 LINE L1 -562 5797 5622 1 1066 305 214 39 0 chr9 63124496 63124599 -60951573 + (TA)n Simple_repeat Simple_repeat 2 108 0 1 1066 296 229 60 21 chr9 63124901 63125039 -60951133 - PB1D10 SINE Alu -4 145 1 1 1066 233 222 63 0 chr9 63124987 63125050 -60951122 - B4 SINE B4 -152 140 74 2 1066 749 171 0 7 chr9 63126800 63126947 -60949225 + (CA)n Simple_repeat Simple_repeat 2 147 0 2 1066 1037 206 10 0 chr9 63129248 63129452 -60946720 - B3 SINE B2 0 216 11 2 1066 284 250 13 53 chr9 63130248 63130324 -60945848 + ID4_ SINE ID 11 83 0 2 1066 301 308 93 0 chr9 63134895 63135002 -60941170 - RSINE1 SINE B4 -46 119 3 2 1066 668 191 37 0 chr9 63135255 63135391 -60940781 - B1_Mur3 SINE Alu -8 141 1 2 1066 216 0 0 0 chr9 63136229 63136253 -60939919 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1066 286 286 102 0 chr9 63138446 63138544 -60937628 + L2a LINE L2 3303 3410 -16 2 1066 307 270 58 47 chr9 63138734 63138932 -60937240 + L1M4b LINE L1 1524 1762 -5142 2 1066 453 291 130 65 chr9 63138968 63139398 -60936774 - L1M4 LINE L1 -455 5728 5271 2 1066 358 264 55 0 chr9 63139560 63139670 -60936502 + RSINE1 SINE B4 39 154 -11 2 1066 571 263 211 24 chr9 63139730 63140104 -60936068 + L1MB7 LINE L1 5725 6168 -16 2 1066 246 204 32 0 chr9 63140233 63140326 -60935846 + (TG)n Simple_repeat Simple_repeat 2 97 0 2 1066 402 219 35 28 chr9 63140346 63140487 -60935685 + (TG)n Simple_repeat Simple_repeat 2 143 0 2 1066 350 115 16 0 chr9 63140506 63140567 -60935605 + (TATG)n Simple_repeat Simple_repeat 1 62 0 2 1066 228 209 60 0 chr9 63140580 63140647 -60935525 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1066 207 0 0 0 chr9 63141689 63141712 -60934460 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1066 220 292 20 20 chr9 63144861 63144959 -60931213 - MIRm SINE MIR -140 136 39 2 1066 736 264 202 3 chr9 63145617 63145933 -60930239 + MTEa LTR MaLR 1 379 0 2 1066 210 325 31 2 chr9 63146032 63146126 -60930046 + MIR SINE MIR 57 153 -115 2 1066 245 75 25 0 chr9 63146151 63146191 -60929981 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1066 458 250 10 0 chr9 63146284 63146388 -60929784 + B1_Mur1 SINE Alu 43 147 -2 2 1066 369 0 0 0 chr9 63146416 63146457 -60929715 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1066 313 318 89 9 chr9 63146462 63146687 -60929485 + L1MEc LINE L1 124 366 -6034 2 1066 294 273 160 80 chr9 63146816 63147105 -60929067 + L1MEc LINE L1 611 944 -5456 2 1066 2384 163 26 17 chr9 63147105 63147522 -60928650 - MTC LTR MaLR 0 421 1 2 1066 294 273 160 80 chr9 63147522 63147758 -60928414 + L1MEc LINE L1 945 1178 -5222 2 1066 621 137 8 25 chr9 63148148 63148269 -60927903 + ORR1C2 LTR MaLR 282 419 0 2 1066 1138 272 107 8 chr9 63148360 63149091 -60927081 + L1MEc LINE L1 2253 3059 -3260 2 1066 257 315 152 12 chr9 63150250 63150414 -60925758 + MIRb SINE MIR 65 251 -17 2 1066 305 299 228 24 chr9 63150647 63150853 -60925319 + B4A SINE B4 36 283 -9 2 1066 1142 82 7 0 chr9 63151182 63151329 -60924843 + B1_Mus1 SINE Alu 1 148 0 2 1066 194 358 57 28 chr9 63151375 63151516 -60924656 - MIRc SINE MIR -110 158 14 2 1066 910 194 275 11 chr9 63151802 63152078 -60924094 + ORR1D1 LTR MaLR 26 374 0 2 1066 386 189 0 21 chr9 63152236 63152333 -60923839 + (CATA)n Simple_repeat Simple_repeat 4 98 0 2 1066 286 216 74 86 chr9 63153535 63153616 -60922556 + MT2A LTR ERVL 70 149 -384 2 1066 650 246 42 24 chr9 63153657 63153869 -60922303 + B3 SINE B2 1 216 0 2 1066 334 319 126 53 chr9 63153897 63154348 -60921824 - L1MD LINE L1 -3552 2594 2111 2 1066 21 0 0 0 chr9 63154413 63154434 -60921738 + AT_rich Low_complexity Low_complexity 1 21 0 2 1066 181 400 33 0 chr9 63154579 63154699 -60921473 - L2 LINE L2 -429 2990 2867 2 1066 912 224 62 0 chr9 63155170 63155362 -60920810 + B3 SINE B2 3 206 -10 2 1066 787 254 229 15 chr9 63157683 63158136 -60918036 - Lx8 LINE L1 -101 7372 6823 2 1066 207 0 0 0 chr9 63161333 63161356 -60914816 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1066 203 374 158 6 chr9 63162187 63162351 -60913821 + L2a LINE L2 2973 3161 -265 2 1066 1302 124 31 48 chr9 63164751 63164980 -60911192 - URR1A DNA MER1_type 0 226 2 2 1066 293 264 193 31 chr9 63165065 63165288 -60910884 - Charlie19a DNA Charlie -16 370 112 2 1066 283 298 12 0 chr9 63166589 63166673 -60909499 - MIR SINE MIR -62 200 116 2 1066 284 375 116 0 chr9 63167599 63167711 -60908461 + PB1 SINE Alu 1 125 -2 2 1066 734 169 14 21 chr9 63168122 63168267 -60907905 + B1_Mur1 SINE Alu 1 144 -5 2 1066 206 81 27 0 chr9 63168651 63168688 -60907484 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2 1066 641 189 16 0 chr9 63168842 63168964 -60907208 - B1_Mur2 SINE Alu -11 138 15 2 1066 1173 45 0 0 chr9 63170404 63170560 -60905612 + (TG)n Simple_repeat Simple_repeat 2 157 0 2 1066 26 50 0 0 chr9 63172503 63172543 -60903629 + AT_rich Low_complexity Low_complexity 1 40 0 2 1066 863 207 52 38 chr9 63172550 63172761 -60903411 + B3 SINE B2 3 216 0 2 1066 637 215 0 0 chr9 63172764 63172894 -60903278 + B1_Mur1 SINE Alu 2 131 -18 2 1066 741 133 18 0 chr9 63172909 63173022 -60903150 + PB1D9 SINE Alu 3 117 -3 2 1066 204 40 0 0 chr9 63173022 63173047 -60903125 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2 1066 761 328 33 7 chr9 63173795 63174068 -60902104 + B4A SINE B4 5 284 -8 2 1066 221 57 0 28 chr9 63175818 63175854 -60900318 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1066 186 103 0 0 chr9 63176059 63176088 -60900084 + (CGTG)n Simple_repeat Simple_repeat 3 31 0 2 1067 651 237 82 10 chr9 63177834 63178030 -60898142 + ID_B1 SINE B4 2 211 -13 2 1067 975 213 10 20 chr9 63179125 63179326 -60896846 + B3 SINE B2 3 201 -15 2 1067 189 74 0 0 chr9 63179329 63179356 -60896816 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 2 1067 582 131 0 0 chr9 63179370 63179469 -60896703 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 2 1067 423 0 0 0 chr9 63180275 63180322 -60895850 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1067 914 186 17 0 chr9 63180940 63181112 -60895060 + B3 SINE B2 2 176 -40 2 1067 360 380 0 0 chr9 63181137 63181279 -60894893 + B1F SINE Alu 1 142 -7 2 1067 1199 41 20 0 chr9 63183366 63183513 -60892659 + B1_Mur4 SINE Alu 1 150 0 2 1067 228 122 0 0 chr9 63183522 63183563 -60892609 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1067 509 0 16 0 chr9 63183580 63183641 -60892531 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1067 421 230 40 10 chr9 63184130 63184231 -60891941 + PB1D10 SINE Alu 7 110 -7 2 1067 774 229 32 11 chr9 63184258 63184448 -60891724 + B3 SINE B2 14 207 -9 2 1067 1086 276 18 0 chr9 63185370 63185642 -60890530 - B4A SINE B4 -6 286 10 2 1067 306 0 0 0 chr9 63186183 63186217 -60889955 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1067 25 63 0 16 chr9 63187805 63187830 -60888342 + AT_rich Low_complexity Low_complexity 1 25 0 2 1067 981 178 98 10 chr9 63187830 63188023 -60888149 + B3 SINE B2 2 211 -5 2 1067 25 63 0 16 chr9 63188023 63188061 -60888111 + AT_rich Low_complexity Low_complexity 1 38 0 2 1067 973 235 194 29 chr9 63188723 63189069 -60887103 - MTD LTR MaLR -16 403 1 2 1067 1168 171 102 5 chr9 63189319 63189524 -60886648 - URR1B DNA MER1_type 0 225 1 2 1067 1023 143 111 50 chr9 63192101 63192300 -60883872 - B3 SINE B2 -4 212 2 2 1067 662 148 135 90 chr9 63192463 63192641 -60883531 + B3 SINE B2 1 186 -9 2 1067 180 350 118 31 chr9 63194564 63194691 -60881481 + MIRc SINE MIR 53 190 -78 2 1067 234 0 0 0 chr9 63194705 63194731 -60881441 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2 1067 217 294 92 31 chr9 63196783 63196913 -60879259 + MIRc SINE MIR 61 198 -70 2 1067 315 0 0 0 chr9 63198612 63198647 -60877525 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1067 650 212 72 14 chr9 63200652 63200791 -60875381 - B1_Mur1 SINE Alu -1 148 2 2 1067 1481 166 22 16 chr9 63200813 63201125 -60875047 - L1_Mur3 LINE L1 -2502 3378 3065 2 1067 380 111 0 0 chr9 63201125 63201179 -60874993 - ORR1B1 LTR MaLR 0 394 341 2 1067 4832 31 0 0 chr9 63201179 63201735 -60874437 - L1Md_T LINE L1 0 6582 6027 2 1067 594 88 49 16 chr9 63201737 63201868 -60874304 - ORR1B1 LTR MaLR -237 157 1 2 1067 363 162 86 12 chr9 63201877 63201958 -60874214 - L1_Mur3 LINE L1 -2820 3060 2974 2 1067 1899 253 78 31 chr9 63201943 63202453 -60873719 + Lx6 LINE L1 6900 7433 -27 2 1067 25 51 0 0 chr9 63202465 63202504 -60873668 + AT_rich Low_complexity Low_complexity 1 39 0 2 1067 1246 35 0 0 chr9 63202639 63202784 -60873388 + B1_Mus1 SINE Alu 2 146 -2 2 1067 692 137 143 15 chr9 63202994 63203127 -60873045 + B1_Mur4 SINE Alu 1 150 0 2 1067 633 260 44 33 chr9 63203305 63203488 -60872684 - B3A SINE B2 -6 192 8 2 1067 417 287 103 71 chr9 63203671 63203952 -60872220 + B4 SINE B4 2 291 -1 2 1067 380 270 40 26 chr9 63204653 63204805 -60871367 - MIRc SINE MIR -25 243 90 2 1067 469 261 51 0 chr9 63205572 63205710 -60870462 + RSINE1 SINE B4 5 149 -16 2 1067 306 125 0 0 chr9 63205710 63205758 -60870414 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1067 257 297 15 66 chr9 63207442 63207579 -60868593 + MARNA DNA Mariner 235 364 -222 2 1067 611 301 20 0 chr9 63207600 63207753 -60868419 + RSINE1 SINE B4 10 165 0 2 1067 297 75 0 0 chr9 63207764 63207804 -60868368 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 2 1067 478 295 64 15 chr9 63208881 63209054 -60867118 + B4A SINE B4 121 288 -4 2 1067 197 245 19 19 chr9 63211242 63211296 -60864876 - MIRm SINE MIR -24 252 199 2 1067 23 0 0 0 chr9 63211998 63212021 -60864151 + AT_rich Low_complexity Low_complexity 1 23 0 2 1067 195 49 48 24 chr9 63212302 63212344 -60863828 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 1067 204 97 0 0 chr9 63212644 63212675 -60863497 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1067 904 201 38 22 chr9 63212939 63213122 -60863050 + B3 SINE B2 3 188 -28 3 1067 700 220 93 82 chr9 63213233 63213416 -60862756 + B3A SINE B2 3 187 -8 3 1067 25 0 0 0 chr9 63214054 63214079 -60862093 + AT_rich Low_complexity Low_complexity 1 25 0 3 1067 315 0 0 0 chr9 63214280 63214315 -60861857 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1067 823 165 105 0 chr9 63214833 63214966 -60861206 + B1_Mur4 SINE Alu 3 149 -1 3 1067 735 221 11 23 chr9 63214973 63215149 -60861023 + B2_Mm2 SINE B2 3 176 -19 3 1067 929 182 13 0 chr9 63215428 63215587 -60860585 + RSINE1 SINE B4 5 165 0 3 1067 249 304 0 0 chr9 63216653 63216709 -60859463 + polypurine Low_complexity Low_complexity 3 58 0 3 1067 294 305 75 40 chr9 63216884 63217058 -60859114 + MIRb SINE MIR 60 239 -29 3 1067 282 207 102 59 chr9 63217155 63217273 -60858899 + RSINE1 SINE B4 43 165 0 3 1067 528 65 0 0 chr9 63217294 63217371 -60858801 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1067 256 300 0 12 chr9 63218533 63218614 -60857558 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 1067 495 296 72 72 chr9 63218626 63218903 -60857269 - B4 SINE B4 -14 278 2 3 1067 22 0 0 0 chr9 63219401 63219423 -60856749 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 234 0 0 0 chr9 63219862 63219888 -60856284 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1067 209 350 121 53 chr9 63219933 63220123 -60856049 + MIRb SINE MIR 52 254 -14 3 1067 591 71 0 0 chr9 63220873 63220958 -60855214 - B1_Mus2 SINE Alu 0 147 63 3 1067 895 236 236 0 chr9 63221381 63221674 -60854498 + MTEa LTR MaLR 1 362 -17 3 1067 186 254 226 22 chr9 63222553 63222690 -60853482 - MIRb SINE MIR -76 192 28 3 1067 240 269 35 69 chr9 63222691 63222807 -60853365 + ID_B1 SINE B4 111 222 -2 3 1067 388 284 108 18 chr9 63222917 63223028 -60853144 - RSINE1 SINE B4 -14 151 31 3 1067 688 219 128 228 chr9 63223818 63224138 -60852034 + B4 SINE B4 1 288 -4 3 1067 352 338 58 19 chr9 63224366 63224520 -60851652 + MER104 DNA Tc2 11 170 -11 3 1067 196 284 45 0 chr9 63224705 63224772 -60851400 + L2c LINE L2 3281 3350 -37 3 1067 195 42 0 0 chr9 63226039 63226063 -60850109 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1067 269 357 106 26 chr9 63227382 63227609 -60848563 + ORR1E LTR MaLR 2 246 -113 3 1067 862 135 6 86 chr9 63227734 63227880 -60848292 + B1_Mur3 SINE Alu 1 140 -9 3 1067 216 0 0 0 chr9 63227880 63227904 -60848268 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1067 862 135 6 86 chr9 63227904 63227919 -60848253 + B1_Mur3 SINE Alu 141 149 0 3 1067 1880 149 78 6 chr9 63228180 63228511 -60847661 + ORR1B2 LTR MaLR 5 359 -8 3 1067 1051 271 95 9 chr9 63228540 63228983 -60847189 - L1MB2 LINE L1 -5 6166 5686 3 1067 235 281 62 0 chr9 63229002 63229066 -60847106 + ID4 SINE ID 2 69 -14 3 1067 2811 98 74 60 chr9 63229067 63229554 -60846618 + RLTR19A LTR ERVK 1 494 -2 3 1067 290 219 295 33 chr9 63229733 63229974 -60846198 - Lx7 LINE L1 -28 7668 7365 3 1067 360 218 12 71 chr9 63229982 63230066 -60846106 + MT2B LTR ERVL 165 243 -358 3 1067 449 231 37 28 chr9 63229994 63230101 -60846071 + PB1D9 SINE Alu 13 120 0 3 1067 989 241 13 0 chr9 63230101 63230338 -60845834 - Lx7 LINE L1 -332 7364 7125 3 1067 426 39 0 0 chr9 63230774 63230826 -60845346 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1067 486 75 0 0 chr9 63231025 63231092 -60845080 + (TCTCCC)n Simple_repeat Simple_repeat 1 67 0 3 1067 875 174 0 0 chr9 63231105 63231249 -60844923 - B1_Mur4 SINE Alu -6 144 1 3 1067 896 223 72 0 chr9 63231602 63231795 -60844377 - B4A SINE B4 -18 274 68 3 1067 244 316 111 33 chr9 63231846 63232026 -60844146 + L2a LINE L2 2934 3127 -299 3 1067 734 297 40 43 chr9 63232036 63232314 -60843858 - B4A SINE B4 -10 282 6 3 1067 183 344 94 0 chr9 63232990 63233086 -60843086 - MIRb SINE MIR -115 153 49 3 1067 183 176 137 68 chr9 63233265 63233338 -60842834 - L3 LINE CR1 -2294 2195 2118 3 1067 213 196 0 0 chr9 63233396 63233442 -60842730 + (ATGGTG)n Simple_repeat Simple_repeat 5 50 0 3 1067 734 109 0 0 chr9 63233707 63233808 -60842364 - B2_Mm2 SINE B2 -93 102 2 3 1067 1013 226 38 5 chr9 63234165 63234374 -60841798 + B3 SINE B2 1 216 0 3 1067 1025 237 79 16 chr9 63235797 63236114 -60840058 - Lx8 LINE L1 -11 7462 7126 3 1067 1491 172 108 37 chr9 63236215 63236595 -60839577 + RMER1C Other Other 936 1342 0 3 1067 660 279 29 31 chr9 63236760 63236965 -60839207 + B3A SINE B2 2 212 -4 3 1067 538 288 0 41 chr9 63237881 63238051 -60838121 - RSINE1 SINE B4 0 165 3 3 1067 876 234 39 15 chr9 63238213 63238417 -60837755 - B3 SINE B2 -6 210 2 3 1067 513 47 0 0 chr9 63238639 63238703 -60837469 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 3 1067 645 286 23 11 chr9 63238723 63238900 -60837272 + B3A SINE B2 5 183 -15 3 1067 246 0 71 36 chr9 63238940 63238996 -60837176 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1067 230 140 0 39 chr9 63239183 63239235 -60836937 - L1M1 LINE L1 -434 5869 5820 3 1067 498 33 0 0 chr9 63239429 63239489 -60836683 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 3 1067 500 290 47 33 chr9 63239632 63239782 -60836390 - RSINE1 SINE B4 -6 159 8 3 1067 198 0 0 0 chr9 63239839 63239861 -60836311 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 3 1067 485 244 53 30 chr9 63241520 63241651 -60834521 - ID_B1 SINE B4 -1 223 90 3 1067 227 147 57 29 chr9 63241682 63241752 -60834420 + A-rich Low_complexity Low_complexity 1 72 0 3 1067 446 143 28 9 chr9 63242083 63242189 -60833983 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1067 21 71 0 0 chr9 63242741 63242783 -60833389 + AT_rich Low_complexity Low_complexity 1 42 0 3 1067 469 80 13 0 chr9 63245436 63245511 -60830661 - Lx3C LINE L1 -2 6974 6899 3 1067 633 21 0 21 chr9 63245902 63245998 -60830174 + L1_Mus3 LINE L1 6539 6632 -6 3 1067 387 233 39 0 chr9 63247524 63247627 -60828545 + PB1D10 SINE Alu 1 107 -10 3 1067 247 309 91 0 chr9 63247532 63247642 -60828530 + ID_B1 SINE B4 93 212 -12 3 1067 1082 125 54 0 chr9 63248013 63248181 -60827991 - B2_Mm2 SINE B2 -15 180 4 3 1067 24 0 0 0 chr9 63248523 63248547 -60827625 + AT_rich Low_complexity Low_complexity 1 24 0 3 1067 186 43 0 0 chr9 63248924 63248947 -60827225 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1067 336 309 80 9 chr9 63248950 63249175 -60826997 + L1M5 LINE L1 5278 5518 -655 3 1067 652 286 92 0 chr9 63249221 63249406 -60826766 - B3 SINE B2 0 216 15 3 1067 243 203 0 0 chr9 63249472 63249531 -60826641 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1067 259 246 58 0 chr9 63249534 63249603 -60826569 - PB1D10 SINE Alu -3 114 42 3 1067 469 286 102 71 chr9 63249669 63250003 -60826169 - MLT1B LTR MaLR 0 390 1 3 1067 233 263 13 13 chr9 63250003 63250080 -60826092 + L1M5 LINE L1 5646 5722 -451 3 1067 232 286 0 0 chr9 63250170 63250219 -60825953 - ID4 SINE ID -32 51 3 3 1067 431 331 0 8 chr9 63250345 63250473 -60825699 - PB1 SINE Alu 0 127 1 3 1067 636 263 143 4 chr9 63250545 63250797 -60825375 + MER44A DNA MER2_type 41 327 -12 3 1067 3004 69 0 19 chr9 63251620 63252034 -60824138 + L1_Mus1 LINE L1 6162 6567 0 3 1067 1638 105 104 71 chr9 63252931 63253239 -60822933 - ORR1A3 LTR MaLR -8 318 1 3 1067 300 200 0 0 chr9 63253514 63253589 -60822583 + T-rich Low_complexity Low_complexity 1 75 0 3 1067 1235 41 7 0 chr9 63253592 63253739 -60822433 - B1_Mus1 SINE Alu 0 148 1 3 1067 189 0 0 0 chr9 63254292 63254313 -60821859 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1067 22 0 0 0 chr9 63254313 63254335 -60821837 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 217 269 45 0 chr9 63255346 63255413 -60820759 - B4 SINE B4 -220 72 3 3 1067 25 0 0 0 chr9 63255818 63255843 -60820329 + AT_rich Low_complexity Low_complexity 1 25 0 3 1067 617 296 29 6 chr9 63255850 63256023 -60820149 - B3A SINE B2 -18 180 4 3 1067 240 321 136 45 chr9 63256145 63256497 -60819675 - L2a LINE L2 -17 3409 3026 3 1067 279 0 0 0 chr9 63256811 63256842 -60819330 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1067 757 211 0 8 chr9 63256867 63256996 -60819176 + B1_Mur1 SINE Alu 1 128 -21 3 1067 429 310 0 52 chr9 63256996 63257013 -60819159 + ID_B1 SINE B4 111 220 -4 3 1067 304 40 0 39 chr9 63257494 63257546 -60818626 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 3 1067 5445 57 0 40 chr9 63257546 63258317 -60817855 - L1Md_F2 LINE L1 -40 6542 5803 3 1067 8018 59 7 0 chr9 63258312 63259378 -60816794 + L1Md_F2 LINE L1 4685 5757 -126 3 1067 1061 244 47 90 chr9 63259569 63259848 -60816324 + B4 SINE B4 3 269 -23 3 1067 477 0 0 0 chr9 63259848 63259901 -60816271 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1067 405 0 0 0 chr9 63259901 63259945 -60816227 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1067 229 292 82 10 chr9 63260190 63260287 -60815885 - MIR3 SINE MIR 0 208 105 3 1067 236 250 78 0 chr9 63260854 63260918 -60815254 + MER67A LTR ERV1 64 132 -411 3 1067 2938 224 140 19 chr9 63260927 63261794 -60814378 + RCHARR1 DNA MER1_type 3 974 0 3 1067 951 292 107 18 chr9 63261794 63262169 -60814003 + MER67A LTR ERV1 132 541 -2 3 1067 434 272 94 13 chr9 63262380 63262615 -60813557 - L1ME2z LINE L1 -585 5859 5606 4 1067 231 88 0 0 chr9 63262783 63262817 -60813355 + (TATG)n Simple_repeat Simple_repeat 1 34 0 4 1067 937 277 31 54 chr9 63262944 63263009 -60813163 + B4 SINE B4 3 72 -220 4 1067 189 0 0 0 chr9 63263009 63263030 -60813142 + (TTG)n Simple_repeat Simple_repeat 2 22 0 4 1067 937 277 31 54 chr9 63263030 63263258 -60812914 + B4 SINE B4 73 288 -4 4 1067 194 326 96 22 chr9 63263637 63263772 -60812400 - MIRc SINE MIR -2 266 122 4 1067 352 254 42 44 chr9 63263966 63264117 -60812055 - MLT1A1 LTR MaLR 0 408 216 4 1067 2394 33 23 3 chr9 63264308 63264614 -60811558 + L1Md_F3 LINE L1 6271 6582 -2 4 1067 371 244 23 0 chr9 63264746 63264832 -60811340 + 5S rRNA rRNA 3 90 -31 4 1067 223 330 50 20 chr9 63264751 63264850 -60811322 + AmnSINE1 SINE SINE 8 109 -466 4 1067 214 299 32 44 chr9 63265052 63265179 -60810993 + MIRc SINE MIR 138 268 0 4 1067 1595 31 0 49 chr9 63265687 63265890 -60810282 - B2_Mm1a SINE B2 0 193 1 4 1067 1964 161 49 3 chr9 63265890 63266074 -60810098 - ORR1C1 LTR MaLR -5 373 182 4 1067 210 37 0 0 chr9 63266074 63266101 -60810071 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 4 1067 1964 161 49 3 chr9 63266101 63266265 -60809907 - ORR1C1 LTR MaLR -197 181 9 4 1067 3357 71 11 2 chr9 63266284 63266723 -60809449 - L1_Mus2 LINE L1 -9 6557 6115 4 1067 806 193 21 7 chr9 63266915 63267056 -60809116 + B1_Mur1 SINE Alu 6 148 -1 4 1067 258 315 10 71 chr9 63267913 63268012 -60808160 + MamRep434 DNA TcMar 310 402 -24 4 1067 430 288 170 15 chr9 63269877 63270148 -60806024 + MER5C DNA MER1_type 1 313 0 4 1067 1178 262 110 93 chr9 63270317 63271554 -60804618 - L1MB7 LINE L1 -121 6063 4802 4 1067 180 0 0 0 chr9 63272160 63272180 -60803992 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1067 27 0 0 0 chr9 63272282 63272309 -60803863 + AT_rich Low_complexity Low_complexity 1 27 0 4 1067 21 0 0 0 chr9 63273460 63273481 -60802691 + AT_rich Low_complexity Low_complexity 1 21 0 4 1067 318 148 0 0 chr9 63273859 63273913 -60802259 + (TTG)n Simple_repeat Simple_repeat 2 55 0 4 1067 506 160 106 0 chr9 63273915 63274009 -60802163 - PB1D9 SINE Alu -15 105 2 4 1067 511 210 15 38 chr9 63274395 63274511 -60801661 + B1_Mus2 SINE Alu 1 119 -1 4 1067 208 231 84 4 chr9 63275394 63275492 -60800680 + MIRm SINE MIR 81 184 -24 4 1067 348 24 0 0 chr9 63277213 63277254 -60798918 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1067 297 0 0 0 chr9 63277254 63277286 -60798886 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1067 324 64 0 0 chr9 63277286 63277333 -60798839 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1067 243 61 0 0 chr9 63277334 63277367 -60798805 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1067 727 272 132 42 chr9 63277379 63277644 -60798528 + B4 SINE B4 2 290 -2 4 1067 694 206 96 6 chr9 63277787 63277953 -60798219 + ORR1C2 LTR MaLR 1 181 -193 4 1067 688 101 40 44 chr9 63277953 63278210 -60797962 + CT-rich Low_complexity Low_complexity 1 255 0 4 1067 1040 155 24 43 chr9 63278210 63278223 -60797949 + ORR1C2 LTR MaLR 177 187 -197 4 1067 916 82 47 0 chr9 63278223 63278393 -60797779 + (TC)n Simple_repeat Simple_repeat 2 179 0 4 1067 1040 155 24 43 chr9 63278393 63278588 -60797584 + ORR1C2 LTR MaLR 188 381 -3 4 1067 1598 178 21 0 chr9 63278596 63278876 -60797296 + ORR1C2-int LTR MaLR 1 286 -1084 4 1067 471 18 0 0 chr9 63278876 63278932 -60797240 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1067 206 174 22 0 chr9 63278938 63278984 -60797188 + GA-rich Low_complexity Low_complexity 2 48 0 4 1067 480 35 0 0 chr9 63278975 63279033 -60797139 + (GAAAA)n Simple_repeat Simple_repeat 5 62 0 4 1067 929 193 12 0 chr9 63279033 63279204 -60796968 + ORR1C2-int LTR MaLR 289 461 -909 4 1067 1347 189 105 13 chr9 63279204 63279488 -60796684 + Lx7 LINE L1 1113 1416 -4464 4 1067 1477 85 21 0 chr9 63279488 63279676 -60796496 + B2_Mm2 SINE B2 1 192 -3 4 1067 1347 205 63 47 chr9 63279676 63279901 -60796271 + Lx7 LINE L1 1417 1655 -4225 4 1067 10759 186 63 41 chr9 63279894 63281686 -60794486 + Lx7 LINE L1 3331 5197 -683 4 1067 2996 149 105 29 chr9 63281686 63282210 -60793962 + RLTR12A LTR ERVK 1 564 -4 4 1067 10759 205 78 22 chr9 63282210 63282643 -60793529 + Lx7 LINE L1 5198 5659 -2037 4 1067 251 91 159 0 chr9 63282643 63282687 -60793485 + MT2B2 LTR ERVL 534 584 0 4 1067 10759 205 78 22 chr9 63282687 63284144 -60792028 + Lx7 LINE L1 5660 7216 -480 4 1067 651 286 17 23 chr9 63284663 63284835 -60791337 + MLT1I LTR MaLR 2 172 -239 4 1067 279 329 96 31 chr9 63285227 63285436 -60790736 + MLT1I-int LTR MaLR 208 431 -956 4 1067 422 246 69 38 chr9 63285436 63285567 -60790605 + RSINE1 SINE B4 2 136 -29 4 1067 233 270 155 65 chr9 63286033 63286166 -60790006 + L1MEg LINE L1 955 1106 -4978 4 1067 2857 53 21 0 chr9 63286166 63286505 -60789667 + ORR1A0 LTR MaLR 1 346 0 4 1067 233 270 155 65 chr9 63286505 63286648 -60789524 + L1MEg LINE L1 1107 1256 -4828 4 1067 22 0 0 0 chr9 63287050 63287072 -60789100 + AT_rich Low_complexity Low_complexity 1 22 0 4 1067 4026 82 11 2 chr9 63287145 63287689 -60788483 - L1_Mur1 LINE L1 0 5886 5361 4 1067 449 269 172 37 chr9 63287682 63287808 -60788364 - Lx7 LINE L1 0 7696 7547 4 1067 1318 48 0 0 chr9 63287808 63287955 -60788217 + B1_Mm SINE Alu 1 147 0 4 1067 449 269 172 37 chr9 63287955 63288089 -60788083 - Lx7 LINE L1 -150 7546 7389 4 1067 924 125 7 65 chr9 63288089 63288243 -60787929 + B1_Mm SINE Alu 1 145 -2 4 1067 449 269 172 37 chr9 63288243 63288382 -60787790 - Lx7 LINE L1 -308 7388 7243 4 1067 218 314 66 9 chr9 63289117 63289223 -60786949 + MIRb SINE MIR 135 246 -22 4 1067 382 250 19 48 chr9 63289273 63289378 -60786794 + PB1D7 SINE Alu 19 120 0 4 1067 311 127 16 0 chr9 63289587 63289650 -60786522 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1067 279 0 0 0 chr9 63289651 63289682 -60786490 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1067 202 182 15 15 chr9 63289710 63289777 -60786395 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1067 923 119 0 7 chr9 63290135 63290270 -60785902 + U4 snRNA snRNA 11 144 -1 4 1067 315 0 0 0 chr9 63290877 63290912 -60785260 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1067 433 225 67 20 chr9 63292447 63292641 -60783531 + MLT1B LTR MaLR 15 238 -229 4 1067 370 321 23 15 chr9 63292789 63292810 -60783362 + MLT1B LTR MaLR 173 193 -181 4 1067 360 0 0 0 chr9 63292810 63292850 -60783322 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1067 370 297 25 32 chr9 63292850 63292976 -60783196 + MLT1B LTR MaLR 194 334 -56 4 1067 1339 233 58 64 chr9 63293440 63293940 -60782232 - L1MC3 LINE L1 -1 7784 7288 4 1067 225 267 0 0 chr9 63294421 63294496 -60781676 - L1MA5 LINE L1 -1 6299 6225 4 1067 182 37 0 36 chr9 63295032 63295060 -60781112 + (TCTCCC)n Simple_repeat Simple_repeat 4 30 0 4 1067 211 136 0 22 chr9 63295276 63295321 -60780851 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 4 1067 1347 27 0 0 chr9 63295321 63295468 -60780704 - B1_Mus1 SINE Alu 0 148 2 4 1067 420 205 54 108 chr9 63295473 63295659 -60780513 - L1MA6 LINE L1 0 6300 6125 4 1067 26 0 0 0 chr9 63296470 63296496 -60779676 + AT_rich Low_complexity Low_complexity 1 26 0 4 1067 247 353 91 11 chr9 63297286 63297472 -60778700 + MIRb SINE MIR 29 229 -39 4 1067 225 254 85 0 chr9 63297906 63297965 -60778207 - MIR3 SINE MIR -33 175 112 4 1067 306 176 0 0 chr9 63299114 63299165 -60777007 - HAL1-3A_ME LINE L1 -831 2027 1977 4 1067 400 309 370 0 chr9 63299210 63299418 -60776754 - B4A SINE B4 -6 286 2 4 1067 5153 193 108 25 chr9 63300315 63301523 -60774649 + Lx7 LINE L1 6257 7674 -22 4 1067 958 164 7 7 chr9 63301523 63301670 -60774502 - B1_Mus2 SINE Alu 0 147 1 4 1067 338 254 87 68 chr9 63301670 63301688 -60774484 + Lx7 LINE L1 7675 7692 -4 4 1067 240 171 0 0 chr9 63303199 63303240 -60772932 - L2b LINE L2 0 3375 3335 4 1067 1339 27 0 0 chr9 63303557 63303703 -60772469 + B1_Mm SINE Alu 2 147 0 4 1067 237 33 0 0 chr9 63303703 63303733 -60772439 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1067 254 308 133 0 chr9 63303824 63303944 -60772228 - MIRb SINE MIR -118 150 15 4 1067 458 291 0 26 chr9 63304979 63305092 -60771080 + PB1D10 SINE Alu 3 112 -5 4 1067 189 385 54 30 chr9 63305928 63306094 -60770078 - MIR3 SINE MIR -23 185 16 4 1067 205 102 0 71 chr9 63306167 63306177 -60769995 + (CAAA)n Simple_repeat Simple_repeat 4 11 0 4 1067 1245 62 7 0 chr9 63306177 63306323 -60769849 + B1_Mm SINE Alu 1 147 0 4 1067 205 102 0 71 chr9 63306323 63306354 -60769818 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 4 1067 352 239 26 0 chr9 63306673 63306758 -60769414 + Charlie5 DNA MER1_type 1 89 -2535 4 1067 327 247 106 37 chr9 63306738 63306927 -60769245 + Charlie5 DNA MER1_type 2395 2596 -28 4 133 4568 97 0 10 chr9 63307432 63308034 -60768138 + L1_Mus4 LINE L1 6041 6636 0 4 1068 393 352 89 35 chr9 63308840 63309243 -60766929 - L2 LINE L2 -573 2846 2422 4 1068 381 295 0 0 chr9 63309717 63309795 -60766377 + ID4_ SINE ID 3 80 -3 4 1068 22 56 0 0 chr9 63310649 63310685 -60765487 + AT_rich Low_complexity Low_complexity 1 36 0 4 1068 897 176 13 39 chr9 63310694 63310848 -60765324 + B1_Mur4 SINE Alu 1 150 0 4 1068 185 270 121 45 chr9 63312303 63312369 -60763803 + L2c LINE L2 3300 3370 -17 4 1068 302 273 43 50 chr9 63312414 63312553 -60763619 + L1M5 LINE L1 5569 5706 -738 4 1068 1096 275 74 28 chr9 63312698 63313128 -60763044 + L1MB7 LINE L1 5726 6175 -9 4 1068 205 275 43 14 chr9 63314051 63314121 -60762051 - MIRb SINE MIR -80 188 117 4 1068 22 0 0 0 chr9 63315765 63315787 -60760385 + AT_rich Low_complexity Low_complexity 1 22 0 4 1068 333 0 0 0 chr9 63315962 63315999 -60760173 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 4 1068 420 276 87 0 chr9 63316789 63316916 -60759256 + MIRb SINE MIR 23 160 -108 4 1068 572 234 122 6 chr9 63317333 63317505 -60758667 + L1MA9 LINE L1 5285 5476 -692 4 1068 662 233 0 0 chr9 63317536 63317656 -60758516 + B1_Mur2 SINE Alu 9 128 -21 4 1068 865 196 153 22 chr9 63317737 63317920 -60758252 + B3 SINE B2 1 207 -9 4 1068 1247 227 59 68 chr9 63317972 63318327 -60757845 + L1MA9 LINE L1 5593 5944 -368 4 1068 408 154 0 4 chr9 63318391 63318466 -60757706 + RLTR1B LTR ERV1 355 410 -102 4 1068 1064 134 6 0 chr9 63318454 63318618 -60757554 + RLTR1B LTR ERV1 348 512 0 4 1068 435 119 0 0 chr9 63318618 63318677 -60757495 + MMVL30-int LTR ERV1 1 59 -3240 4 1068 582 66 0 0 chr9 63318666 63318742 -60757430 + MMVL30-int LTR ERV1 838 913 -2386 4 1068 2508 27 38 0 chr9 63318739 63319031 -60757141 + MMVL30-int LTR ERV1 1806 2108 -1191 4 1068 3367 140 169 14 chr9 63319033 63319677 -60756495 + MMVL30-int LTR ERV1 2955 3698 0 4 1068 3109 45 27 20 chr9 63319677 63320084 -60756088 + RLTR1B LTR ERV1 1 410 -102 4 1068 553 157 0 0 chr9 63320091 63320180 -60755992 + RLTR1B LTR ERV1 348 436 -76 4 1068 198 0 0 0 chr9 63320180 63320202 -60755970 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1068 529 291 28 0 chr9 63320293 63320434 -60755738 + L1MA9 LINE L1 6168 6312 0 4 1068 457 200 0 0 chr9 63321713 63321798 -60754374 - L2a LINE L2 0 3426 3342 5 1068 529 258 8 0 chr9 63322731 63322863 -60753309 - Lx5 LINE L1 -432 6618 6486 5 1068 1446 226 89 42 chr9 63322859 63323265 -60752907 + Lx6 LINE L1 6990 7414 -46 5 1068 195 129 0 0 chr9 63323270 63323301 -60752871 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1068 539 308 17 17 chr9 63323497 63323578 -60752594 + B4A SINE B4 3 83 -209 5 1068 321 220 83 92 chr9 63323578 63323698 -60752474 + PB1D9 SINE Alu 1 119 -1 5 1068 488 226 170 58 chr9 63323707 63323895 -60752277 + B4A SINE B4 82 290 -2 5 1068 978 145 0 0 chr9 63323898 63324224 -60751948 + (CA)n Simple_repeat Simple_repeat 1 326 0 5 1068 375 241 24 140 chr9 63324661 63324825 -60751347 + L2a LINE L2 3231 3414 -12 5 1068 450 0 0 0 chr9 63325514 63325564 -60750608 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 5 1068 437 243 78 35 chr9 63326274 63326415 -60749757 - MLT1D LTR MaLR -290 215 69 5 1068 249 290 30 0 chr9 63326645 63326745 -60749427 - L1M5 LINE L1 -279 5845 5743 5 1068 223 158 35 58 chr9 63327534 63327621 -60748551 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1068 466 317 60 24 chr9 63328688 63328897 -60747275 + MIRb SINE MIR 42 267 -1 5 1068 189 74 0 0 chr9 63329086 63329113 -60747059 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 5 1068 182 395 42 0 chr9 63329400 63329519 -60746653 + MIR SINE MIR 112 235 -27 5 1068 234 280 95 27 chr9 63330723 63330870 -60745302 + MIR3 SINE MIR 21 177 -31 5 1068 2109 170 133 96 chr9 63331128 63331714 -60744458 - RMER19C LTR ERVK -3 608 1 5 1068 203 299 15 0 chr9 63333180 63333247 -60742925 + CT-rich Low_complexity Low_complexity 4 71 0 5 1068 1069 86 0 0 chr9 63333798 63333937 -60742235 + B1_Mus1 SINE Alu 1 139 -9 5 1068 234 0 0 0 chr9 63333937 63333963 -60742209 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1068 447 19 0 0 chr9 63334921 63334973 -60741199 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1068 242 192 9 0 chr9 63335679 63335728 -60740444 - MIRc SINE MIR -175 93 39 5 1068 265 243 81 65 chr9 63336139 63336262 -60739910 + MLT1L LTR MaLR 353 477 -133 5 1068 243 0 0 0 chr9 63340503 63340530 -60735642 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1068 234 320 119 11 chr9 63344734 63344911 -60731261 - MIR SINE MIR -3 259 64 5 1068 2533 137 50 2 chr9 63345297 63345699 -60730473 - MTC LTR MaLR 0 421 1 5 1068 25 31 0 0 chr9 63347184 63347216 -60728956 + AT_rich Low_complexity Low_complexity 1 32 0 5 1068 348 284 34 17 chr9 63348320 63348438 -60727734 + PB1D7 SINE Alu 1 120 0 5 1068 622 156 28 9 chr9 63349727 63349950 -60726222 + CT-rich Low_complexity Low_complexity 1 227 0 5 1068 507 309 18 12 chr9 63349969 63350133 -60726039 + MIRb SINE MIR 93 257 -11 5 1068 237 323 31 10 chr9 63350363 63350460 -60725712 + RMER12 LTR ERVK 748 846 -476 5 1068 2116 178 91 42 chr9 63350891 63351346 -60724826 - RCHARR1 DNA MER1_type 0 974 494 5 1068 517 244 156 17 chr9 63351346 63351525 -60724647 - B3 SINE B2 -10 206 3 5 1068 2116 178 91 42 chr9 63351525 63351683 -60724489 - RCHARR1 DNA MER1_type -481 493 331 5 1068 684 164 152 0 chr9 63351683 63351848 -60724324 + MTD LTR MaLR 1 190 -229 5 1068 310 191 32 0 chr9 63351823 63351886 -60724286 + B3A SINE B2 36 100 -98 5 1068 930 232 68 8 chr9 63351884 63352132 -60724040 + MTD LTR MaLR 149 411 -8 5 1068 403 299 5 148 chr9 63352113 63352220 -60723952 - RCHARR1 DNA MER1_type -616 358 253 5 1068 917 229 15 0 chr9 63352220 63352421 -60723751 + B3 SINE B2 1 204 -12 5 1068 403 299 5 148 chr9 63352421 63352509 -60723663 - RCHARR1 DNA MER1_type -722 252 191 5 1068 337 200 0 14 chr9 63352777 63352848 -60723324 + L1MB2 LINE L1 6077 6146 -25 5 1068 585 255 85 0 chr9 63353167 63353308 -60722864 + B3A SINE B2 1 153 -45 5 1068 383 52 17 0 chr9 63353310 63353368 -60722804 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1068 248 333 68 10 chr9 63357204 63357307 -60718865 + MIRm SINE MIR 50 158 -118 5 1068 945 241 28 9 chr9 63357503 63357721 -60718451 - ID_B1 SINE B4 -1 223 2 5 1068 181 276 17 17 chr9 63361709 63361768 -60714404 + MIRc SINE MIR 173 231 -37 5 1068 920 215 11 0 chr9 63361981 63362158 -60714014 - B3A SINE B2 -18 180 2 5 1068 4424 186 43 13 chr9 63362395 63363229 -60712943 + Lx5 LINE L1 6189 7047 -3 5 1068 471 335 99 50 chr9 63363537 63363920 -60712252 + MLT1D LTR MaLR 37 438 -67 5 1068 189 0 0 0 chr9 63363951 63363972 -60712200 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1068 357 24 0 0 chr9 63363972 63364013 -60712159 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1068 300 53 0 0 chr9 63364014 63364052 -60712120 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 5 1068 393 286 79 0 chr9 63364057 63364183 -60711989 - B3A SINE B2 -62 136 1 5 1068 905 122 7 52 chr9 63364213 63364368 -60711804 - B1_Mur3 SINE Alu 0 149 2 5 1068 221 180 20 0 chr9 63364677 63364727 -60711445 + CT-rich Low_complexity Low_complexity 2 52 0 5 1068 353 198 88 0 chr9 63364754 63364845 -60711327 - B4A SINE B4 0 292 194 5 1068 658 237 0 0 chr9 63365167 63365302 -60710870 - B1_Mur1 SINE Alu -2 147 13 5 1068 416 234 26 26 chr9 63366435 63366549 -60709623 + Charlie1 DNA MER1_type 1 114 -2667 5 1068 305 225 25 12 chr9 63366645 63366726 -60709446 + Charlie1 DNA MER1_type 2307 2388 -393 5 1068 209 277 0 0 chr9 63366877 63366924 -60709248 + CT-rich Low_complexity Low_complexity 2 48 0 5 1068 373 256 0 0 chr9 63366933 63367015 -60709157 - PB1D10 SINE Alu -12 105 24 5 1068 22 56 0 0 chr9 63368521 63368557 -60707615 + AT_rich Low_complexity Low_complexity 1 36 0 5 1068 1747 16 0 0 chr9 63370423 63370616 -60705556 + B2_Mm1a SINE B2 1 193 0 5 1068 380 123 14 0 chr9 63372146 63372219 -60703953 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1068 27 29 0 0 chr9 63373282 63373316 -60702856 + AT_rich Low_complexity Low_complexity 1 34 0 5 1068 35 24 0 0 chr9 63373365 63373407 -60702765 + AT_rich Low_complexity Low_complexity 1 42 0 5 1068 411 73 0 0 chr9 63373520 63373575 -60702597 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1068 234 0 0 0 chr9 63373575 63373601 -60702571 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 1068 358 237 65 29 chr9 63373883 63374022 -60702150 + B1F SINE Alu 3 146 -3 5 1068 273 119 0 0 chr9 63376348 63376390 -60699782 + (TTA)n Simple_repeat Simple_repeat 2 43 0 5 1068 295 261 15 0 chr9 63376398 63376463 -60699709 - ID4 SINE ID -16 67 2 5 1068 455 242 21 0 chr9 63376493 63376588 -60699584 - PB1D10 SINE Alu -3 114 18 5 1068 491 296 120 27 chr9 63376591 63376775 -60699397 + B3 SINE B2 3 203 -13 5 1068 243 305 32 0 chr9 63377481 63377576 -60698596 + MIRm SINE MIR 54 151 -125 5 1068 563 328 5 37 chr9 63377802 63377992 -60698180 - ID_B1 SINE B4 -38 186 3 5 1068 288 209 7 29 chr9 63379848 63379986 -60696186 + (CAGA)n Simple_repeat Simple_repeat 2 136 0 5 1068 222 227 0 0 chr9 63380039 63380114 -60696058 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 5 1068 301 86 35 0 chr9 63380146 63380204 -60695968 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1068 232 149 52 70 chr9 63380284 63380399 -60695773 + (TTAAA)n Simple_repeat Simple_repeat 4 116 0 5 1068 21 0 0 0 chr9 63380401 63380422 -60695750 + AT_rich Low_complexity Low_complexity 1 21 0 5 1068 407 200 12 0 chr9 63383798 63383878 -60692294 + ID4 SINE ID 1 81 -2 5 1068 315 243 37 37 chr9 63385253 63385360 -60690812 + L1M2 LINE L1 5443 5549 -751 5 1068 240 155 239 0 chr9 63385710 63385781 -60690391 + L1M2 LINE L1 5535 5622 -561 5 1068 251 271 43 85 chr9 63385759 63385900 -60690272 + L1MA6 LINE L1 5896 6030 -270 5 1068 1419 206 107 74 chr9 63385912 63386306 -60689866 - MTD LTR MaLR -12 407 1 5 1068 467 300 44 40 chr9 63386306 63386556 -60689616 + L1MA6 LINE L1 6046 6296 -4 5 1068 832 263 171 19 chr9 63386641 63387262 -60688910 + L1MD1 LINE L1 1187 1901 -4732 5 1068 663 144 54 0 chr9 63387284 63387395 -60688777 + B3 SINE B2 2 118 -98 5 1068 360 0 0 0 chr9 63387403 63387443 -60688729 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1068 299 266 128 34 chr9 63387498 63387732 -60688440 + L1MD1 LINE L1 1907 2162 -4471 5 1068 229 275 132 0 chr9 63387771 63387862 -60688310 + L1MD1 LINE L1 5992 6094 -539 5 1068 1288 261 61 61 chr9 63388001 63388641 -60687531 + L1MA4A LINE L1 3748 4387 -1753 5 1068 180 0 0 0 chr9 63388644 63388664 -60687508 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 5 1068 462 198 0 0 chr9 63388668 63388749 -60687423 + L1MA4A LINE L1 4531 4611 -1532 5 1068 4455 164 170 28 chr9 63388757 63389655 -60686517 + RMER1B Other Other 41 1066 0 5 1068 325 268 81 32 chr9 63389683 63389868 -60686304 + L1MA4A LINE L1 4599 4792 -1351 5 1068 296 330 65 65 chr9 63389868 63390160 -60686012 + B4A SINE B4 1 292 0 5 1068 1339 297 31 10 chr9 63390189 63390679 -60685493 + L1MA4A LINE L1 4805 5304 -839 5 1068 476 289 95 18 chr9 63390753 63391090 -60685082 + L1MA4A LINE L1 5477 5856 -447 5 1068 854 245 146 12 chr9 63391334 63391521 -60684651 + L1MD1 LINE L1 6269 6483 -150 5 1068 306 188 27 80 chr9 63391521 63391596 -60684576 + ID4_ SINE ID 3 73 -10 5 1068 854 245 146 12 chr9 63391596 63391730 -60684442 + L1MD1 LINE L1 6484 6633 0 5 1068 239 323 31 0 chr9 63391727 63391823 -60684349 + L1M5 LINE L1 5175 5273 -873 5 1068 3187 43 0 8 chr9 63391957 63392355 -60683817 - L1Md_F2 LINE L1 0 6582 6188 5 1068 751 201 17 28 chr9 63395143 63395322 -60680850 + B3 SINE B2 40 216 0 5 1068 186 326 180 7 chr9 63395508 63395647 -60680525 - MIR3 SINE MIR -3 205 43 5 1068 607 268 78 19 chr9 63397080 63397350 -60678822 - B4A SINE B4 -5 287 2 5 1068 307 362 19 26 chr9 63398355 63398511 -60677661 - MER5B DNA MER1_type -12 166 12 5 1068 228 342 0 0 chr9 63399127 63399206 -60676966 + ID4 SINE ID 5 83 0 5 1068 234 62 0 0 chr9 63399506 63399538 -60676634 + (TTA)n Simple_repeat Simple_repeat 2 33 0 5 1068 701 231 137 0 chr9 63399538 63399720 -60676452 - ID_B1 SINE B4 -10 214 8 5 1068 4318 133 73 65 chr9 63399806 63400684 -60675488 + RMER19B LTR ERVK 1 885 -17 5 1068 1213 28 14 0 chr9 63400684 63400827 -60675345 + B1_Mm SINE Alu 1 145 -2 5 1068 456 31 31 0 chr9 63401141 63401205 -60674967 + B1_Mm SINE Alu 80 145 -2 5 1068 619 317 96 4 chr9 63401330 63401590 -60674582 + MLT1A0 LTR MaLR 82 365 0 5 1068 765 160 21 0 chr9 63402481 63402625 -60673547 + RMER19B LTR ERVK 756 902 0 6 1068 509 268 137 18 chr9 63403019 63403361 -60672811 - HAL1b LINE L1 -1275 734 352 6 1068 230 259 0 36 chr9 63405799 63405855 -60670317 + G-rich Low_complexity Low_complexity 2 55 0 6 1068 667 225 40 0 chr9 63405994 63406145 -60670027 + B3A SINE B2 1 157 -41 6 1068 936 83 0 53 chr9 63406148 63406338 -60669834 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1068 216 97 0 0 chr9 63406848 63406879 -60669293 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1068 287 254 0 0 chr9 63406880 63406947 -60669225 - RSINE1 SINE B4 -34 131 65 6 1068 798 247 191 7 chr9 63407739 63408037 -60668135 + ORR1E LTR MaLR 5 357 -2 6 1068 225 331 64 32 chr9 63408046 63408171 -60668001 + MIRb SINE MIR 9 137 -131 6 1068 1130 206 5 5 chr9 63408186 63408401 -60667771 - B3 SINE B2 0 216 2 6 1068 270 0 0 0 chr9 63408875 63408905 -60667267 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1068 742 290 111 4 chr9 63409086 63409339 -60666833 - B4 SINE B4 -12 280 1 6 1068 581 280 26 82 chr9 63410708 63410941 -60665231 + B4A SINE B4 2 221 -71 6 1068 198 0 0 0 chr9 63411578 63411600 -60664572 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1068 938 106 6 53 chr9 63411600 63411769 -60664403 - B2_Mm2 SINE B2 -34 161 1 6 1068 412 245 12 0 chr9 63411882 63411976 -60664196 - PB1D7 SINE Alu -3 117 23 6 1068 387 0 0 0 chr9 63412038 63412081 -60664091 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1068 407 204 61 9 chr9 63412269 63412354 -60663818 - Charlie4a DNA MER1_type -31 477 388 6 1068 608 189 45 0 chr9 63412354 63412465 -60663707 + PB1D10 SINE Alu 1 116 -1 6 1068 407 204 61 9 chr9 63412465 63412493 -60663679 - Charlie4a DNA MER1_type -121 387 359 6 1068 588 123 0 0 chr9 63412592 63412706 -60663466 + (GA)n Simple_repeat Simple_repeat 1 114 0 6 1068 23 0 0 0 chr9 63413292 63413315 -60662857 + AT_rich Low_complexity Low_complexity 1 23 0 6 1068 26 0 0 0 chr9 63413382 63413408 -60662764 + AT_rich Low_complexity Low_complexity 1 26 0 6 1068 225 283 128 21 chr9 63413706 63413800 -60662372 + MIRb SINE MIR 125 228 -40 6 1068 910 236 35 0 chr9 63414387 63414586 -60661586 - B3 SINE B2 -7 209 4 6 1068 334 296 229 10 chr9 63415050 63415251 -60660921 - MIRb SINE MIR -17 251 7 6 1068 216 0 0 0 chr9 63416499 63416523 -60659649 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1068 23 68 0 0 chr9 63418082 63418126 -60658046 + AT_rich Low_complexity Low_complexity 1 44 0 6 1068 294 164 0 0 chr9 63418185 63418240 -60657932 + (TATG)n Simple_repeat Simple_repeat 3 57 0 6 1068 372 22 0 0 chr9 63419549 63419594 -60656578 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1068 276 170 0 0 chr9 63421301 63421354 -60654818 + (TATG)n Simple_repeat Simple_repeat 1 53 0 6 1068 539 266 27 11 chr9 63421449 63421635 -60654537 - L1MB7 LINE L1 -101 6083 5895 6 1068 374 275 45 9 chr9 63422700 63422810 -60653362 + PB1D10 SINE Alu 3 116 -1 6 1068 583 264 12 6 chr9 63422830 63422990 -60653182 + RSINE1 SINE B4 5 165 0 6 1068 299 277 0 24 chr9 63422995 63423080 -60653092 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1068 323 243 0 28 chr9 63423118 63423190 -60652982 + ID4 SINE ID 3 72 -11 6 1068 305 218 115 29 chr9 63424193 63424297 -60651875 + MIRc SINE MIR 129 241 -27 6 1068 589 239 14 0 chr9 63424847 63424989 -60651183 + ID_B1 SINE B4 78 221 -3 6 1068 185 344 21 0 chr9 63425954 63426050 -60650122 - L2 LINE L2 -2088 1331 1234 6 1068 358 281 67 20 chr9 63426973 63427122 -60649050 - RSINE1 SINE B4 -2 163 8 6 1068 297 0 0 0 chr9 63427229 63427262 -60648910 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1068 243 0 0 0 chr9 63427262 63427288 -60648884 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1068 286 169 91 0 chr9 63427318 63427395 -60648777 - RCHARR1 DNA MER1_type -211 763 680 6 1068 291 321 91 9 chr9 63427650 63427760 -60648412 + RSINE1 SINE B4 29 147 -18 6 1068 29 0 0 0 chr9 63427789 63427818 -60648354 + AT_rich Low_complexity Low_complexity 1 29 0 6 1068 275 282 43 51 chr9 63428061 63428199 -60647973 - RCHARR1 DNA MER1_type -782 192 56 6 1068 1772 49 12 4 chr9 63428200 63428447 -60647725 + MTB LTR MaLR 1 249 -151 6 1068 24 0 0 0 chr9 63428514 63428538 -60647634 + AT_rich Low_complexity Low_complexity 1 24 0 6 1068 1165 58 0 6 chr9 63428568 63428724 -60647448 + MTB LTR MaLR 242 396 0 6 1068 242 329 84 69 chr9 63429840 63430186 -60645986 + L2c LINE L2 2961 3311 -76 6 1068 328 239 156 41 chr9 63430439 63430561 -60645611 - ID_B1 SINE B4 -4 220 85 6 1068 389 328 0 0 chr9 63430588 63430704 -60645468 - PB1 SINE Alu -1 126 11 6 1068 279 194 46 0 chr9 63431048 63431123 -60645049 + B1F SINE Alu 27 141 -8 6 1068 1105 206 103 3 chr9 63431445 63431747 -60644425 + MTEb LTR MaLR 35 366 -13 6 1068 666 180 0 0 chr9 63432197 63432336 -60643836 + CT-rich Low_complexity Low_complexity 3 141 0 6 1068 578 214 14 78 chr9 63432350 63432492 -60643680 - B1_Mur2 SINE Alu -10 139 7 6 1068 464 117 13 0 chr9 63432817 63432894 -60643278 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 6 1068 352 94 0 0 chr9 63432894 63432947 -60643225 - B1_Mus2 SINE Alu -93 54 2 6 1068 244 289 0 118 chr9 63433095 63433205 -60642967 + L2b LINE L2 3219 3315 -60 6 1068 265 328 125 28 chr9 63433725 63433901 -60642271 + MIR SINE MIR 3 195 -67 6 1068 448 279 86 0 chr9 63434096 63434236 -60641936 + MLT1A0 LTR MaLR 214 365 0 6 1068 2239 249 141 36 chr9 63434252 63435172 -60641000 + L1_Mur3 LINE L1 3248 4264 -1616 6 1068 1011 207 97 0 chr9 63435344 63435398 -60640774 + Lx6 LINE L1 7059 7112 -348 6 1068 297 0 0 0 chr9 63435398 63435431 -60640741 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1068 1011 207 97 0 chr9 63435431 63435593 -60640579 + Lx6 LINE L1 7113 7295 -165 6 1068 1677 159 7 0 chr9 63435601 63435877 -60640295 + MTC LTR MaLR 91 368 -53 6 1068 398 279 92 7 chr9 63435919 63436060 -60640112 - L1MB7 LINE L1 -5 6179 6027 6 1068 22 0 0 0 chr9 63436757 63436779 -60639393 + AT_rich Low_complexity Low_complexity 1 22 0 6 1068 910 147 148 60 chr9 63437222 63437439 -60638733 + RMER16 LTR ERVK 211 446 -87 6 1068 542 15 15 0 chr9 63437448 63437515 -60638657 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 1068 744 261 12 0 chr9 63438132 63438293 -60637879 + RSINE1 SINE B4 3 165 0 6 1068 221 252 105 62 chr9 63438535 63438728 -60637444 + MIRc SINE MIR 36 236 -32 6 133 395 302 63 81 chr9 63438824 63439382 -60636790 - L1M3e LINE L1 -5249 1781 1234 6 1069 276 276 40 0 chr9 63440446 63440522 -60635650 + PB1D7 SINE Alu 1 79 -41 6 1069 319 287 103 32 chr9 63440772 63440927 -60635245 + MLT1F2 LTR MaLR 390 555 -5 6 1069 671 233 16 189 chr9 63441409 63441663 -60634509 - B3 SINE B2 -6 210 1 6 1069 597 133 0 0 chr9 63442692 63442790 -60633382 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 1069 270 0 0 0 chr9 63442790 63442820 -60633352 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1069 657 251 105 25 chr9 63442851 63443051 -60633121 - ID_B1 SINE B4 -7 217 2 6 1069 1547 235 54 16 chr9 63446112 63446500 -60629672 - MTD LTR MaLR -14 405 18 6 1069 278 246 139 0 chr9 63446583 63446705 -60629467 - Zaphod DNA Tip100 -3268 763 625 6 1069 439 289 212 19 chr9 63447116 63447328 -60628844 + RMER15 LTR ERVL 310 562 -13 6 1069 1296 120 21 5 chr9 63447581 63447773 -60628399 - B2_Mm2 SINE B2 0 195 1 6 1069 774 283 220 41 chr9 63447948 63448408 -60627764 + MER77 LTR ERVL 45 586 -21 6 1069 4272 43 18 4 chr9 63448736 63449248 -60626924 + MURVY-LTR LTR ERV1 1 519 0 6 1069 252 111 0 0 chr9 63449300 63449345 -60626827 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1069 1084 72 0 0 chr9 63449506 63449644 -60626528 + B1_Mus1 SINE Alu 11 148 0 6 1069 438 271 28 9 chr9 63449841 63449949 -60626223 + B1F1 SINE Alu 3 112 -37 6 1069 251 299 15 0 chr9 63449978 63450045 -60626127 + ID4 SINE ID 3 70 -13 6 1069 186 71 0 0 chr9 63450915 63450943 -60625229 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1069 1519 241 68 43 chr9 63450959 63451444 -60624728 + RMER5 LTR ERV1 30 526 -8 6 1069 203 0 37 0 chr9 63451649 63451676 -60624496 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1069 342 0 0 0 chr9 63451706 63451744 -60624428 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1069 270 260 42 48 chr9 63451824 63451964 -60624208 + MIRm SINE MIR 22 156 -120 6 1069 22 35 0 0 chr9 63452565 63452594 -60623578 + AT_rich Low_complexity Low_complexity 1 29 0 6 1069 207 0 0 0 chr9 63452620 63452643 -60623529 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1069 324 264 14 0 chr9 63452643 63452715 -60623457 - ID2 SINE ID -10 73 1 6 1069 315 0 0 0 chr9 63453145 63453180 -60622992 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1069 584 132 9 0 chr9 63453779 63453885 -60622287 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 1069 443 306 32 0 chr9 63453918 63454042 -60622130 - RSINE1 SINE B4 -36 129 2 6 1069 805 267 15 41 chr9 63454539 63454734 -60621438 - B3 SINE B2 -22 194 5 6 1069 818 162 35 0 chr9 63455389 63455531 -60620641 - B1_Mur1 SINE Alu -1 148 2 6 1069 35 0 0 0 chr9 63455553 63455588 -60620584 + AT_rich Low_complexity Low_complexity 1 35 0 6 1069 207 0 0 0 chr9 63457657 63457680 -60618492 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1069 420 266 134 45 chr9 63457852 63458053 -60618119 - MER20 DNA MER1_type 0 219 1 7 1069 768 263 31 67 chr9 63458099 63458323 -60617849 + B3 SINE B2 1 216 0 7 1069 222 37 0 0 chr9 63458586 63458613 -60617559 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1069 832 230 101 11 chr9 63459564 63459753 -60616419 - B3 SINE B2 -5 211 6 7 1069 702 239 25 25 chr9 63460077 63460240 -60615932 + ID_B1 SINE B4 2 164 -60 7 1069 287 310 0 0 chr9 63461831 63461918 -60614254 - L1MB8 LINE L1 -1 6177 6091 7 1069 492 227 131 96 chr9 63462659 63462888 -60613284 + B4A SINE B4 1 237 -55 7 1069 1008 96 20 7 chr9 63464913 63465060 -60611112 - B2_Mm2 SINE B2 -11 184 36 7 1069 279 0 0 0 chr9 63465575 63465606 -60610566 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1069 190 56 56 0 chr9 63465599 63465635 -60610537 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 7 1069 1110 64 43 0 chr9 63465638 63465778 -60610394 - B1_Mus1 SINE Alu -1 147 2 7 1069 749 221 76 26 chr9 63466195 63466384 -60609788 - B3 SINE B2 -4 212 36 7 1069 599 239 143 12 chr9 63466462 63466623 -60609549 - B3A SINE B2 -16 182 1 7 1069 1480 70 16 0 chr9 63467061 63467248 -60608924 - B2_Mm2 SINE B2 -4 191 2 7 1069 1161 101 6 17 chr9 63467257 63467429 -60608743 - B2_Mm2 SINE B2 -24 171 2 7 1069 1104 98 80 11 chr9 63467680 63467855 -60608317 - B2_Mm2 SINE B2 -8 187 1 7 1069 420 270 118 41 chr9 63468666 63468836 -60607336 - MLT1C LTR MaLR -243 224 42 7 1069 395 301 58 94 chr9 63469481 63469705 -60606467 + MER2 DNA MER2_type 25 240 -105 7 1069 345 222 35 16 chr9 63469793 63469897 -60606275 + MTD LTR MaLR 255 418 -1 7 1069 409 255 276 5 chr9 63470429 63470646 -60605526 - B4 SINE B4 -14 278 3 7 1069 489 167 33 0 chr9 63470703 63470793 -60605379 + Lx8 LINE L1 7141 7233 -240 7 1069 254 292 78 11 chr9 63470793 63470883 -60605289 + RMER15 LTR ERVL 371 466 -109 7 1069 481 264 122 15 chr9 63471346 63471550 -60604622 + L1MB7 LINE L1 5927 6152 -32 7 1069 223 247 121 24 chr9 63471690 63471773 -60604399 - MER5B DNA MER1_type -16 162 72 7 1069 751 242 11 33 chr9 63471849 63472033 -60604139 - B3A SINE B2 -16 182 3 7 1069 190 278 0 0 chr9 63472600 63472654 -60603518 - L2b LINE L2 -5 3370 3317 7 1069 232 359 130 16 chr9 63472950 63473134 -60603038 - L2b LINE L2 -467 2952 2748 7 1069 200 396 8 49 chr9 63473292 63473414 -60602758 - L3 LINE CR1 -27 4462 4346 7 1069 461 266 26 34 chr9 63473624 63473741 -60602431 + PB1D10 SINE Alu 2 117 0 7 1069 640 259 180 12 chr9 63474054 63474304 -60601868 - B4A SINE B4 0 292 1 7 1069 256 264 149 11 chr9 63474401 63474536 -60601636 - MIR3 SINE MIR -47 161 10 7 1069 190 167 116 23 chr9 63474798 63474841 -60601331 - L4 LINE RTE -211 1818 1772 7 1069 1866 152 120 0 chr9 63475400 63475742 -60600430 - ORR1C2 LTR MaLR 0 384 2 7 1069 267 157 0 0 chr9 63477204 63477255 -60598917 + (CACCAT)n Simple_repeat Simple_repeat 5 55 0 7 1069 430 247 22 0 chr9 63477266 63477355 -60598817 - PB1D10 SINE Alu -26 91 1 7 1069 346 342 18 18 chr9 63477355 63477379 -60598793 - ID_B1 SINE B4 -52 172 60 7 1069 266 184 154 33 chr9 63477412 63477532 -60598640 + MIR SINE MIR 1 134 -142 7 1069 1005 217 43 0 chr9 63478465 63478672 -60597500 - B3 SINE B2 0 216 1 7 1069 189 0 0 0 chr9 63478686 63478707 -60597465 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1069 1441 80 5 0 chr9 63479011 63479199 -60596973 + B2_Mm1t SINE B2 2 190 -3 7 1069 203 75 71 48 chr9 63479385 63479427 -60596745 + T-rich Low_complexity Low_complexity 6 48 0 7 1069 644 331 99 50 chr9 63479505 63479848 -60596324 + Tigger7 DNA MER2_type 20 379 -2112 7 1069 759 216 102 11 chr9 63479983 63480170 -60596002 - B3 SINE B2 -10 206 3 7 1069 329 219 105 0 chr9 63480177 63480282 -60595890 + Tigger7 DNA MER2_type 2278 2393 -98 7 1069 22 56 0 0 chr9 63481173 63481209 -60594963 + AT_rich Low_complexity Low_complexity 1 36 0 7 1069 23 0 0 0 chr9 63481521 63481544 -60594628 + AT_rich Low_complexity Low_complexity 1 23 0 7 1069 192 77 0 0 chr9 63482691 63482717 -60593455 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1069 799 111 207 0 chr9 63482717 63482852 -60593320 - B2_Mm2 SINE B2 -32 163 1 7 1069 1248 41 0 0 chr9 63482863 63483009 -60593163 - B1_Mm SINE Alu 0 147 2 7 1069 225 0 0 0 chr9 63483409 63483434 -60592738 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7 1069 646 231 206 21 chr9 63483694 63483937 -60592235 - B4 SINE B4 0 292 5 7 1069 293 308 121 26 chr9 63484436 63484626 -60591546 + L2 LINE L2 1952 2159 -1260 7 1069 2107 177 239 32 chr9 63484708 63485308 -60590864 - RMER1B Other Other -9 1057 15 7 1069 234 290 0 0 chr9 63485884 63485953 -60590219 + (TGGA)n Simple_repeat Simple_repeat 3 71 0 7 1069 390 250 182 59 chr9 63486163 63486333 -60589839 + B3A SINE B2 2 192 -6 7 1069 194 302 112 34 chr9 63489901 63489990 -60586182 + L2b LINE L2 3270 3365 -10 7 1069 871 192 42 42 chr9 63490441 63490631 -60585541 - B3 SINE B2 0 216 27 7 1069 869 211 0 6 chr9 63491438 63491600 -60584572 - RSINE1 SINE B4 -2 163 3 7 1069 333 267 133 0 chr9 63492235 63492340 -60583832 - MER5A DNA MER1_type -66 123 5 7 1069 743 281 16 29 chr9 63506237 63506505 -60569667 + ORR1E LTR MaLR 2 264 -106 1 1069 474 65 0 0 chr9 63507537 63507599 -60568573 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1069 421 228 263 15 chr9 63507615 63507820 -60568352 - B4 SINE B4 -31 261 6 3 1069 2054 145 6 3 chr9 63508544 63508869 -60567303 + MTC LTR MaLR 1 326 -95 4 1069 189 0 0 0 chr9 63512489 63512510 -60563662 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1069 501 17 0 0 chr9 63513542 63513600 -60562572 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 6 1069 246 62 0 0 chr9 63513600 63513631 -60562541 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1069 755 254 153 36 chr9 63517285 63517534 -60558638 + B4 SINE B4 1 278 -14 8 1069 225 294 0 0 chr9 63517558 63517626 -60558546 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 1069 352 368 16 31 chr9 63517712 63517903 -60558269 + L1ME2 LINE L1 4820 5007 -1139 1 1069 540 319 13 67 chr9 63518187 63518236 -60557936 + L1ME2 LINE L1 5387 5432 -747 1 1069 1090 219 5 19 chr9 63518236 63518450 -60557722 + B3 SINE B2 1 211 -5 1 1069 540 319 13 67 chr9 63518450 63518625 -60557547 + L1ME2 LINE L1 5433 5599 -580 1 1069 252 163 0 0 chr9 63518642 63518691 -60557481 - ORR1E LTR MaLR 0 379 331 1 1069 1098 266 55 0 chr9 63518691 63518966 -60557206 + MTE2b LTR MaLR 1 290 -89 1 1069 951 279 117 19 chr9 63518996 63519303 -60556869 - ORR1E LTR MaLR -16 343 7 1 1069 428 228 76 56 chr9 63519524 63519668 -60556504 - B1F1 SINE Alu -1 148 2 1 1069 229 277 60 0 chr9 63519819 63519902 -60556270 + L1ME2 LINE L1 6066 6153 -11 1 1069 2661 152 9 2 chr9 63521820 63522256 -60553916 + Lx LINE L1 6216 6654 0 1 1069 246 128 0 0 chr9 63523062 63523101 -60553071 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1069 1218 92 0 0 chr9 63524011 63524185 -60551987 + (GAA)n Simple_repeat Simple_repeat 3 176 0 1 1069 1914 139 78 0 chr9 63524417 63524749 -60551423 + ORR1B2 LTR MaLR 2 359 -8 1 1069 204 205 18 18 chr9 63525695 63525804 -60550368 + CT-rich Low_complexity Low_complexity 1 109 0 1 1069 211 182 30 15 chr9 63525946 63526013 -60550159 + GA-rich Low_complexity Low_complexity 4 71 0 2 1069 329 286 0 0 chr9 63526430 63526507 -60549665 - ID4_ SINE ID -1 82 6 2 1069 236 30 30 0 chr9 63526614 63526647 -60549525 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 1069 302 322 99 0 chr9 63526651 63526772 -60549400 - B3A SINE B2 -21 177 45 2 1069 760 114 0 15 chr9 63527542 63527678 -60548494 + B1_Mur4 SINE Alu 16 150 0 2 1069 1514 65 16 0 chr9 63527973 63528159 -60548013 + B2_Mm2 SINE B2 1 189 -6 2 1069 296 268 18 24 chr9 63528174 63528286 -60547886 + GA-rich Low_complexity Low_complexity 1 111 0 2 1069 750 113 0 22 chr9 63528299 63528435 -60547737 + (GGA)n Simple_repeat Simple_repeat 1 133 0 2 1069 240 59 0 0 chr9 63528682 63528716 -60547456 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1069 1193 68 0 0 chr9 63529944 63530090 -60546082 - B1_Mus2 SINE Alu 0 147 2 2 1069 228 100 0 0 chr9 63531616 63531656 -60544516 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 3 1069 1057 104 23 0 chr9 63531656 63531828 -60544344 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 3 1069 468 0 0 0 chr9 63531831 63531883 -60544289 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 3 1069 281 276 30 53 chr9 63531990 63532107 -60544065 + PB1D10 SINE Alu 3 125 -2 3 1069 21 0 0 0 chr9 63532584 63532605 -60543567 + AT_rich Low_complexity Low_complexity 1 21 0 3 1069 488 273 147 16 chr9 63532637 63532827 -60543345 - B3 SINE B2 -1 215 1 3 1069 338 336 129 18 chr9 63532843 63532896 -60543276 + L1ME1 LINE L1 5782 5834 -345 3 1069 200 35 35 0 chr9 63532896 63532925 -60543247 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1069 338 336 129 18 chr9 63532925 63533213 -60542959 + L1ME1 LINE L1 5835 6160 -19 3 1069 1181 232 14 57 chr9 63533780 63534077 -60542095 + B4 SINE B4 7 290 -2 3 1069 186 43 0 0 chr9 63534092 63534115 -60542057 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1069 441 0 0 0 chr9 63534115 63534163 -60542009 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1069 1677 270 62 25 chr9 63534285 63534816 -60541356 + Lx7 LINE L1 6867 7417 -279 4 1069 472 230 214 0 chr9 63535542 63535591 -60540581 + Charlie8 DNA MER1_type 3 58 -2370 4 1069 189 0 0 0 chr9 63535591 63535612 -60540560 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1069 472 230 214 0 chr9 63535612 63535749 -60540423 + Charlie8 DNA MER1_type 59 228 -2200 4 1069 746 267 100 119 chr9 63536005 63536366 -60539806 + MTEa LTR MaLR 18 371 -8 4 1069 1729 309 128 36 chr9 63536370 63537671 -60538501 + MTEa-int LTR MaLR 1 1575 -5 4 1069 1436 222 73 25 chr9 63537674 63537867 -60538305 + MTEa LTR MaLR 1 198 -181 4 1069 792 65 0 0 chr9 63537867 63537974 -60538198 + (TC)n Simple_repeat Simple_repeat 2 108 0 4 1069 1436 222 73 25 chr9 63537974 63538136 -60538036 + MTEa LTR MaLR 199 372 -7 4 1069 650 213 21 14 chr9 63539381 63539524 -60536648 + RSINE1 SINE B4 1 144 -21 4 1069 479 16 32 0 chr9 63539527 63539590 -60536582 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 4 1069 247 175 0 0 chr9 63539592 63539632 -60536540 + C-rich Low_complexity Low_complexity 2 41 0 4 1069 353 179 0 12 chr9 63539634 63539719 -60536453 + CT-rich Low_complexity Low_complexity 2 85 0 4 1069 315 0 0 0 chr9 63539719 63539754 -60536418 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1069 300 316 80 14 chr9 63540542 63540680 -60535492 + ID_B1 SINE B4 78 224 0 5 1069 390 169 0 0 chr9 63540686 63540751 -60535421 + ID4 SINE ID 6 70 -13 5 1069 306 0 0 0 chr9 63540751 63540785 -60535387 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1069 495 0 0 0 chr9 63540785 63540839 -60535333 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1069 395 217 120 0 chr9 63541491 63541583 -60534589 + PB1D10 SINE Alu 6 108 -9 5 1069 1627 189 56 69 chr9 63541593 63541680 -60534492 + ORR1D2-int LTR MaLR 931 993 -377 5 1069 231 61 0 0 chr9 63541680 63541713 -60534459 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 1069 1627 189 56 69 chr9 63541713 63542000 -60534172 + ORR1D2-int LTR MaLR 994 1300 -70 5 1069 529 180 36 0 chr9 63542033 63542144 -60534028 + ORR1D2 LTR MaLR 1 115 -255 5 1069 239 343 23 40 chr9 63542167 63542193 -60533979 - B2_Mm2 SINE B2 -13 182 10 5 1069 769 235 0 7 chr9 63542193 63542343 -60533829 - RSINE1 SINE B4 -6 159 11 5 1069 364 67 33 0 chr9 63542528 63542588 -60533584 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1069 313 246 245 18 chr9 63543091 63543206 -60532966 + MIRb SINE MIR 8 154 -114 6 1069 646 270 89 116 chr9 63543209 63543290 -60532882 + B4 SINE B4 2 82 -210 6 1069 267 54 0 0 chr9 63543290 63543327 -60532845 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1069 646 270 89 116 chr9 63543327 63543453 -60532719 + B4 SINE B4 83 227 -65 6 1069 782 240 125 0 chr9 63543453 63543590 -60532582 + B3 SINE B2 1 145 -71 6 1069 324 0 0 0 chr9 63543590 63543626 -60532546 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1069 782 240 125 0 chr9 63543626 63543680 -60532492 + B3 SINE B2 146 215 -1 6 1069 646 270 89 116 chr9 63543680 63543764 -60532408 + B4 SINE B4 228 285 -7 6 1069 318 50 0 0 chr9 63543772 63543812 -60532360 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1069 210 195 0 0 chr9 63545065 63545106 -60531066 + BC1_Mm scRNA scRNA 1 41 -111 6 1069 353 280 0 41 chr9 63545121 63545244 -60530928 + GA-rich Low_complexity Low_complexity 2 119 0 6 1069 241 135 19 19 chr9 63545283 63545336 -60530836 + GA-rich Low_complexity Low_complexity 1 53 0 6 1069 282 95 0 0 chr9 63546378 63546420 -60529752 + (GGGGA)n Simple_repeat Simple_repeat 1 42 0 6 1069 319 309 135 0 chr9 63547069 63547174 -60528998 + MIRb SINE MIR 35 161 -107 7 1069 204 67 0 0 chr9 63547174 63547204 -60528968 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 7 1069 319 309 135 0 chr9 63547204 63547276 -60528896 + MIRb SINE MIR 162 235 -33 7 1069 810 160 259 6 chr9 63547555 63547725 -60528447 - B3 SINE B2 -1 215 3 7 1069 225 65 0 0 chr9 63547812 63547843 -60528329 + (CAA)n Simple_repeat Simple_repeat 1 31 0 7 1069 589 221 231 12 chr9 63548083 63548252 -60527920 + B3 SINE B2 1 206 -10 7 1069 857 182 0 11 chr9 63548267 63548445 -60527727 + GA-rich Low_complexity Low_complexity 4 179 0 7 1069 703 239 136 24 chr9 63548445 63548651 -60527521 + B4A SINE B4 1 229 -63 7 1069 297 0 0 0 chr9 63548652 63548685 -60527487 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1069 306 283 45 45 chr9 63548691 63548802 -60527370 - MIRb SINE MIR -141 127 17 7 1069 450 0 0 0 chr9 63549803 63549853 -60526319 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1069 243 367 41 8 chr9 63549909 63550030 -60526142 - L2a LINE L2 -18 3408 3284 8 1069 26 0 0 0 chr9 63551672 63551698 -60524474 + AT_rich Low_complexity Low_complexity 1 26 0 8 1069 239 132 59 0 chr9 63552455 63552523 -60523649 + CT-rich Low_complexity Low_complexity 1 72 0 8 1069 206 292 0 0 chr9 63552588 63552636 -60523536 + (CATG)n Simple_repeat Simple_repeat 3 50 0 8 1069 334 247 82 0 chr9 63552638 63552725 -60523447 - B4 SINE B4 0 292 198 8 1069 487 252 106 14 chr9 63552725 63552866 -60523306 + B3 SINE B2 1 154 -62 8 1069 288 0 0 0 chr9 63552866 63552898 -60523274 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1069 605 217 0 112 chr9 63555106 63555267 -60520905 - B1_Mur1 SINE Alu -1 148 6 8 1069 218 211 0 0 chr9 63555296 63555334 -60520838 + RSINE1 SINE B4 3 40 -125 8 1069 882 260 9 24 chr9 63556436 63556649 -60519523 - ID_B1 SINE B4 -7 217 8 8 1069 215 152 22 0 chr9 63556795 63556841 -60519331 + CT-rich Low_complexity Low_complexity 1 47 0 9 1069 487 269 119 40 chr9 63556943 63557094 -60519078 + RSINE1 SINE B4 3 165 0 9 1069 785 229 8 20 chr9 63557153 63557341 -60518831 + B3A SINE B2 2 172 -23 9 1069 318 67 0 0 chr9 63557341 63557386 -60518786 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1069 534 236 20 108 chr9 63557386 63557401 -60518771 + B2_Mm2 SINE B2 173 187 -8 9 1069 1170 257 128 6 chr9 63558251 63558580 -60517592 + MTD LTR MaLR 1 369 -50 9 1069 988 265 0 0 chr9 63558978 63559178 -60516994 + ID_B1 SINE B4 17 216 -8 9 1069 856 249 15 15 chr9 63560285 63560481 -60515691 + ID_B1 SINE B4 9 204 -20 9 1069 304 328 97 68 chr9 63561258 63561536 -60514636 - B4A SINE B4 0 292 7 9 1069 214 214 0 35 chr9 63561745 63561803 -60514369 + (CATA)n Simple_repeat Simple_repeat 2 57 0 9 1069 532 314 47 59 chr9 63561873 63562127 -60514045 + B4A SINE B4 1 251 -41 9 1069 226 310 17 17 chr9 63562128 63562146 -60514026 + RMER12 LTR ERVK 750 766 -556 1 1069 192 77 0 0 chr9 63562146 63562172 -60514000 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1069 226 310 17 17 chr9 63562172 63562271 -60513901 + RMER12 LTR ERVK 767 866 -456 1 1069 399 339 209 40 chr9 63562432 63562853 -60513319 + L1MB7 LINE L1 4741 5232 -914 1 1069 474 311 294 27 chr9 63562940 63563496 -60512676 + L1MB7 LINE L1 5384 6087 -97 1 1069 406 270 0 20 chr9 63563785 63563887 -60512285 + PB1D10 SINE Alu 18 117 0 1 1069 342 0 0 0 chr9 63564308 63564346 -60511826 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1069 198 179 179 0 chr9 63564497 63564553 -60511619 - MIRc SINE MIR -120 148 83 1 1069 486 263 60 0 chr9 63564832 63564965 -60511207 + B4A SINE B4 2 142 -150 1 1069 318 106 0 0 chr9 63564979 63565026 -60511146 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1069 739 215 106 77 chr9 63565793 63566000 -60510172 + ID_B1 SINE B4 8 220 -4 1 1069 200 338 73 23 chr9 63567458 63567606 -60508566 - MIRc SINE MIR -69 199 44 1 1069 408 201 7 25 chr9 63568273 63568393 -60507779 - B1F SINE Alu -12 115 1 1 1069 456 221 113 19 chr9 63568397 63568503 -60507669 - PB1D10 SINE Alu 0 117 2 1 1069 270 0 0 0 chr9 63568732 63568762 -60507410 + (CCTG)n Simple_repeat Simple_repeat 3 32 0 1 1069 603 0 0 0 chr9 63569809 63569876 -60506296 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1070 336 230 11 22 chr9 63570596 63570685 -60505487 + 5S rRNA rRNA 2 89 -32 1 1070 844 290 60 11 chr9 63571456 63571721 -60504451 + B4A SINE B4 2 279 -13 1 1070 249 119 0 0 chr9 63571731 63571773 -60504399 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1070 528 227 0 0 chr9 63571811 63571987 -60504185 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1070 630 207 0 0 chr9 63572005 63572184 -60503988 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1070 226 319 0 21 chr9 63572444 63572540 -60503632 + MIRb SINE MIR 45 138 -130 1 1070 1038 217 51 23 chr9 63573053 63573270 -60502902 - ID_B1 SINE B4 -1 223 1 1 1070 288 0 0 0 chr9 63574934 63574966 -60501206 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1070 798 286 122 8 chr9 63574971 63575225 -60500947 - B4 SINE B4 -8 284 2 1 1070 208 200 17 52 chr9 63575303 63575361 -60500811 - MIR SINE MIR -90 172 117 1 1070 240 273 120 10 chr9 63575631 63575731 -60500441 - MIRc SINE MIR -55 213 103 1 1070 354 290 68 49 chr9 63575747 63575910 -60500262 - MIRb SINE MIR -77 191 26 1 1070 429 226 9 28 chr9 63576263 63576372 -60499800 + B1F1 SINE Alu 1 107 -42 1 1070 399 21 0 0 chr9 63576378 63576426 -60499746 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1070 770 315 139 43 chr9 63576597 63577178 -60498994 - MER45B DNA Tip100 -341 699 63 1 1070 694 281 6 0 chr9 63577244 63577408 -60498764 + RSINE1 SINE B4 1 165 0 1 1070 480 281 41 64 chr9 63577482 63577653 -60498519 - RMER30 DNA MER1_type -29 173 7 1 1070 658 232 75 50 chr9 63577880 63578080 -60498092 + B3 SINE B2 12 216 0 1 1070 219 304 0 28 chr9 63578218 63578289 -60497883 - MIRc SINE MIR -123 145 77 1 1070 632 234 3 32 chr9 63579584 63579928 -60496244 + G-rich Low_complexity Low_complexity 1 333 0 1 1070 377 258 0 29 chr9 63579897 63580069 -60496103 + GA-rich Low_complexity Low_complexity 2 168 0 1 1070 646 301 71 5 chr9 63580169 63580379 -60495793 + LTR33A_ LTR ERVL 304 527 -4 1 1070 466 180 130 0 chr9 63581069 63581169 -60495003 + PB1D10 SINE Alu 5 117 0 1 1070 253 145 39 26 chr9 63581173 63581251 -60494921 + GA-rich Low_complexity Low_complexity 2 80 0 1 1070 506 240 101 0 chr9 63581277 63581406 -60494766 + RSINE1 SINE B4 24 165 0 1 1070 230 185 24 24 chr9 63581409 63581492 -60494680 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1070 306 0 0 0 chr9 63581535 63581569 -60494603 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1070 335 247 239 30 chr9 63582307 63582474 -60493698 + RMER15 LTR ERVL 324 525 -50 1 1070 183 42 0 0 chr9 63582480 63582504 -60493668 + (G)n Simple_repeat Simple_repeat 1 24 0 1 1070 282 379 0 10 chr9 63585605 63585709 -60490463 - MER5B DNA MER1_type -2 176 74 1 1070 1315 254 15 80 chr9 63585733 63585960 -60490212 + MTEa LTR MaLR 4 209 -170 1 1070 252 0 0 0 chr9 63585960 63585988 -60490184 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1070 1315 254 15 80 chr9 63585988 63586162 -60490010 + MTEa LTR MaLR 210 379 0 1 1070 198 0 0 0 chr9 63586173 63586195 -60489977 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1070 205 210 129 0 chr9 63586433 63586495 -60489677 - MIR SINE MIR -58 150 81 1 1070 1643 148 236 15 chr9 63587112 63587455 -60488717 + MTD LTR MaLR 1 419 0 1 1070 352 213 213 0 chr9 63587872 63587980 -60488192 - ID_B1 SINE B4 -4 220 90 1 1070 741 275 51 67 chr9 63588900 63589153 -60487019 + B4A SINE B4 26 274 -18 1 1070 333 0 0 0 chr9 63589169 63589206 -60486966 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1070 298 143 0 31 chr9 63591093 63591158 -60485014 + GA-rich Low_complexity Low_complexity 3 65 0 1 1070 1063 214 14 5 chr9 63591955 63592162 -60484010 + B3 SINE B2 1 209 -7 1 1070 515 292 88 107 chr9 63592427 63592745 -60483427 + ORR1E LTR MaLR 8 319 -40 1 1070 501 322 27 27 chr9 63593521 63593671 -60482501 - RSINE1 SINE B4 -8 157 8 1 1070 604 195 26 0 chr9 63593681 63593794 -60482378 - PB1D10 SINE Alu -1 116 1 1 1070 352 262 105 14 chr9 63595050 63595193 -60480979 - MER115 DNA Tip100 -90 603 448 1 1070 204 364 123 8 chr9 63596036 63596166 -60480006 - MIRb SINE MIR 0 268 124 1 1070 928 156 6 11 chr9 63596470 63596651 -60479521 + GA-rich Low_complexity Low_complexity 1 180 0 1 1070 615 197 64 32 chr9 63597585 63597742 -60478430 + RSINE1 SINE B4 2 163 -2 1 1070 351 0 0 0 chr9 63597919 63597958 -60478214 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1070 434 274 0 0 chr9 63598635 63598741 -60477431 + RSINE1 SINE B4 3 108 -57 1 1070 1246 48 0 7 chr9 63598955 63599103 -60477069 - B1_Mus2 SINE Alu 0 147 1 1 1070 1129 269 172 9 chr9 63599135 63599461 -60476711 + MTE2b LTR MaLR 1 379 0 1 1070 371 258 34 0 chr9 63599994 63600083 -60476089 + RSINE1 SINE B4 18 109 -56 1 1070 408 302 94 12 chr9 63600129 63600300 -60475872 + B3A SINE B2 3 187 -11 1 1070 497 110 11 0 chr9 63600703 63600794 -60475378 + (CA)n Simple_repeat Simple_repeat 2 93 0 1 1070 612 283 6 86 chr9 63601388 63601562 -60474610 + RSINE1 SINE B4 3 162 -3 1 1070 397 256 0 0 chr9 63603164 63603246 -60472926 + ID4 SINE ID 2 83 0 1 1070 21 57 0 0 chr9 63605705 63605740 -60470432 + GC_rich Low_complexity Low_complexity 1 35 0 1 1070 189 0 0 0 chr9 63605886 63605907 -60470265 + (TCC)n Simple_repeat Simple_repeat 2 22 0 1 1070 678 141 49 62 chr9 63607329 63607473 -60468699 - B1_Mus1 SINE Alu 0 148 7 1 1070 212 186 23 0 chr9 63607518 63607561 -60468611 - MIRm SINE MIR -184 92 49 1 1070 600 162 14 3 chr9 63607981 63608123 -60468049 + B1_Mus1 SINE Alu 1 146 -1 1 1070 279 236 0 0 chr9 63608767 63608822 -60467350 + RSINE1 SINE B4 92 146 -19 1 1070 1340 290 108 32 chr9 63609013 63609597 -60466575 + L1MB3 LINE L1 5512 6139 -44 1 1070 985 217 43 19 chr9 63609598 63609809 -60466363 + B3 SINE B2 1 216 0 1 1070 936 180 75 37 chr9 63610276 63610490 -60465682 + ID_B1 SINE B4 2 223 -1 1 1070 25 0 0 0 chr9 63611147 63611172 -60465000 + AT_rich Low_complexity Low_complexity 1 25 0 1 1070 1129 264 91 17 chr9 63611291 63611696 -60464476 + L1MB3 LINE L1 5638 6072 -111 1 1070 727 246 0 0 chr9 63611696 63611834 -60464338 + RSINE1 SINE B4 3 140 -25 1 1070 270 81 0 0 chr9 63611834 63611871 -60464301 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1070 249 222 19 0 chr9 63611944 63611998 -60464174 - ID_B1 SINE B4 -3 221 167 1 1070 964 150 0 0 chr9 63612080 63612227 -60463945 + B1_Mur4 SINE Alu 3 149 -1 1 1070 503 259 66 56 chr9 63612920 63613116 -60463056 + Lx8 LINE L1 6882 7079 -394 1 1070 1935 112 0 17 chr9 63613132 63613422 -60462750 + ORR1A3 LTR MaLR 1 285 -41 1 1070 1115 83 0 14 chr9 63613422 63613569 -60462603 + B1_Mus1 SINE Alu 2 146 -2 1 1070 200 29 0 103 chr9 63613569 63613608 -60462564 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1070 1050 153 175 0 chr9 63613630 63613813 -60462359 + B3 SINE B2 2 216 0 1 1070 21 0 0 0 chr9 63613813 63613834 -60462338 + AT_rich Low_complexity Low_complexity 1 21 0 1 1070 393 73 0 18 chr9 63613844 63613900 -60462272 + ORR1A3 LTR MaLR 272 326 0 1 1070 254 267 137 20 chr9 63613971 63614124 -60462048 + Lx8 LINE L1 7301 7471 -2 1 1070 416 327 90 24 chr9 63614223 63614389 -60461783 + B3A SINE B2 15 191 -7 1 1070 763 254 28 37 chr9 63614389 63614606 -60461566 + B3 SINE B2 2 216 0 1 1070 21 36 0 0 chr9 63614620 63614648 -60461524 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 617 164 29 0 chr9 63614671 63614775 -60461397 + B1_Mus1 SINE Alu 34 140 -8 1 1070 1188 68 0 13 chr9 63615381 63615531 -60460641 - B1_Mus1 SINE Alu 0 148 1 1 1070 270 0 0 0 chr9 63615788 63615818 -60460354 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1070 1308 45 0 0 chr9 63615818 63615975 -60460197 - B2_Mm2 SINE B2 -38 157 1 1 1070 213 231 0 0 chr9 63615975 63616027 -60460145 + (TTG)n Simple_repeat Simple_repeat 2 53 0 1 1070 995 230 129 16 chr9 63616281 63616537 -60459635 - B4A SINE B4 -7 285 1 1 1070 713 259 108 49 chr9 63617073 63617276 -60458896 - B3A SINE B2 0 216 2 1 1070 519 285 124 5 chr9 63617290 63617491 -60458681 - MER33 DNA MER1_type -99 225 1 1 1070 214 179 70 18 chr9 63617629 63617686 -60458486 - ID4 SINE ID -23 60 1 2 1070 189 315 31 52 chr9 63617894 63617991 -60458181 + L2c LINE L2 3279 3373 -14 2 1070 1128 174 70 6 chr9 63617991 63618268 -60457904 + Lx9 LINE L1 5596 5930 -1714 2 1070 363 211 25 112 chr9 63618281 63618441 -60457731 + Lx9 LINE L1 7015 7160 -484 2 1070 411 226 87 0 chr9 63618490 63618605 -60457567 + Lx9 LINE L1 7297 7421 -223 2 1070 294 29 0 0 chr9 63618626 63618661 -60457511 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1070 884 147 42 0 chr9 63618693 63618836 -60457336 + B1_Mur3 SINE Alu 1 149 0 2 1070 23 68 0 0 chr9 63618955 63618999 -60457173 + AT_rich Low_complexity Low_complexity 1 44 0 2 1070 198 0 0 0 chr9 63620648 63620670 -60455502 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 2 1070 491 249 0 4 chr9 63621293 63621531 -60454641 + (TG)n Simple_repeat Simple_repeat 1 236 0 2 1070 246 234 0 0 chr9 63621535 63621582 -60454590 - B3A SINE B2 -20 178 132 2 1070 760 221 7 0 chr9 63621628 63621768 -60454404 - B4A SINE B4 -151 141 1 2 1070 932 191 14 72 chr9 63621970 63622179 -60453993 - B3A SINE B2 0 198 2 2 1070 237 250 117 0 chr9 63622579 63622639 -60453533 + ID4_ SINE ID 17 83 0 2 1070 454 233 144 37 chr9 63622938 63623125 -60453047 + B4A SINE B4 68 274 -18 2 1070 424 230 65 29 chr9 63623841 63624011 -60452161 + L1M5 LINE L1 5024 5199 -947 2 1070 286 281 38 76 chr9 63624028 63624159 -60452013 + MT2B LTR ERVL 153 278 -323 2 1070 761 167 60 15 chr9 63624049 63624183 -60451989 + B1_Mur3 SINE Alu 7 146 -3 2 1070 455 289 58 92 chr9 63624203 63624263 -60451909 + L1M5 LINE L1 5261 5309 -864 2 1070 827 193 0 36 chr9 63624263 63624403 -60451769 + B1_Mur2 SINE Alu 4 138 -11 2 1070 844 77 14 20 chr9 63624403 63624549 -60451623 + (GAA)n Simple_repeat Simple_repeat 2 146 0 2 1070 455 289 58 92 chr9 63624549 63624834 -60451338 + L1M5 LINE L1 5310 5594 -579 2 1070 280 224 17 0 chr9 63624886 63624944 -60451228 + B4A SINE B4 2 60 -232 2 1070 444 62 0 0 chr9 63624951 63625015 -60451157 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1070 411 324 48 27 chr9 63625028 63625174 -60450998 + RSINE1 SINE B4 7 155 -10 2 1070 213 39 0 0 chr9 63625213 63625239 -60450933 + (TAG)n Simple_repeat Simple_repeat 1 26 0 2 1070 315 0 0 0 chr9 63625317 63625352 -60450820 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1070 594 295 38 6 chr9 63625403 63625560 -60450612 + RSINE1 SINE B4 4 165 0 2 1070 218 273 0 0 chr9 63625560 63625604 -60450568 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1070 296 287 67 47 chr9 63625839 63625989 -60450183 + MIRb SINE MIR 4 156 -112 2 1070 245 313 81 0 chr9 63626318 63626417 -60449755 + LTR78 LTR ERV1 282 388 -916 2 1070 985 238 6 0 chr9 63627164 63627345 -60448827 - ID_B1 SINE B4 -31 193 12 2 1070 261 0 0 0 chr9 63627347 63627376 -60448796 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 2 1070 187 327 139 9 chr9 63627462 63627570 -60448602 + MIRb SINE MIR 73 194 -74 2 1070 220 304 57 82 chr9 63627612 63627734 -60448438 - MIRc SINE MIR -62 206 88 2 1070 192 77 0 0 chr9 63628397 63628423 -60447749 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2 1070 1386 246 35 22 chr9 63629093 63629463 -60446709 - MTEa LTR MaLR 0 379 5 2 1070 343 328 66 0 chr9 63630119 63630302 -60445870 + LTR16C LTR ERVL 293 487 -2 2 1070 225 285 83 40 chr9 63630302 63630423 -60445749 - MIR SINE MIR -107 169 35 2 1070 405 309 40 23 chr9 63630437 63630647 -60445525 - MTEb LTR MaLR -8 371 152 2 1070 252 0 0 0 chr9 63631098 63631126 -60445046 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1070 558 136 23 34 chr9 63631132 63631307 -60444865 + (TCTCTG)n Simple_repeat Simple_repeat 2 174 0 2 1070 921 44 0 0 chr9 63631465 63631579 -60444593 + (TCCA)n Simple_repeat Simple_repeat 4 117 0 2 1070 429 90 0 0 chr9 63632150 63632217 -60443955 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1070 1054 236 80 25 chr9 63632225 63632499 -60443673 - B4A SINE B4 -2 290 2 2 1070 570 51 0 0 chr9 63632774 63632852 -60443320 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1070 247 255 48 87 chr9 63633930 63634033 -60442139 + MIRm SINE MIR 37 135 -141 2 1070 499 254 10 0 chr9 63634532 63634743 -60441429 + (CA)n Simple_repeat Simple_repeat 1 213 0 2 1070 196 372 0 44 chr9 63634897 63634987 -60441185 - MIR SINE MIR -149 113 28 2 1070 513 0 0 0 chr9 63635336 63635393 -60440779 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1070 315 0 0 0 chr9 63635393 63635427 -60440745 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1070 264 349 147 14 chr9 63636260 63636545 -60439627 - L2 LINE L2 -401 3018 2696 2 1070 241 339 154 26 chr9 63636591 63636824 -60439348 - L2 LINE L2 -823 2596 2334 2 1070 1050 70 41 27 chr9 63636831 63636961 -60439211 + B1_Mur4 SINE Alu 2 137 -13 2 1070 270 0 0 0 chr9 63636961 63636991 -60439181 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 1070 1050 70 41 27 chr9 63636991 63637007 -60439165 + B1_Mur4 SINE Alu 138 150 0 2 1070 651 229 88 13 chr9 63637132 63637291 -60438881 - RMER30 DNA MER1_type -1 201 31 2 1070 318 306 24 32 chr9 63637394 63637519 -60438653 - MIR3 SINE MIR -18 190 67 2 1070 237 257 74 65 chr9 63637792 63637900 -60438272 + MT2A LTR ERVL 71 179 -354 2 1070 1268 232 7 14 chr9 63637819 63638094 -60438078 + MTEa LTR MaLR 105 377 -2 2 1070 659 254 87 22 chr9 63638523 63638708 -60437464 - ID_B1 SINE B4 -1 223 27 2 1070 315 0 0 0 chr9 63638709 63638744 -60437428 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1070 837 83 8 0 chr9 63638744 63638865 -60437307 - B1_Mus1 SINE Alu -9 139 15 2 1070 225 328 65 79 chr9 63638853 63638895 -60437277 - B4A SINE B4 -75 217 121 2 1070 342 256 24 49 chr9 63638895 63638977 -60437195 - PB1D7 SINE Alu -35 85 6 2 1070 225 328 65 79 chr9 63638977 63638992 -60437180 - B4A SINE B4 -75 120 81 2 1070 231 88 0 0 chr9 63639270 63639304 -60436868 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 2 1070 825 130 106 8 chr9 63640051 63640183 -60435989 + B1_Mur4 SINE Alu 2 146 -4 2 1070 714 24 0 0 chr9 63640206 63640290 -60435882 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 1070 193 337 129 0 chr9 63640532 63640633 -60435539 - MIR SINE MIR -36 226 113 2 1070 656 313 114 31 chr9 63640971 63641225 -60434947 + B4A SINE B4 2 276 -16 2 1070 294 260 0 25 chr9 63641791 63641870 -60434302 + CT-rich Low_complexity Low_complexity 2 78 0 2 1070 401 294 202 26 chr9 63642873 63643366 -60432806 + L2a LINE L2 2756 3349 -77 2 1070 780 278 28 0 chr9 63643494 63643710 -60432462 + ID_B1 SINE B4 2 223 -1 2 1070 685 40 39 23 chr9 63643970 63644099 -60432073 + (CA)n Simple_repeat Simple_repeat 1 131 0 2 1070 292 221 38 19 chr9 63644117 63644223 -60431949 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 1070 669 251 28 101 chr9 63644927 63645144 -60431028 - B3 SINE B2 -1 215 15 2 1070 894 321 92 20 chr9 63645305 63646105 -60430067 - L1MA4 LINE L1 -383 5917 5011 2 1070 292 204 23 93 chr9 63646147 63646247 -60429925 + ORR1E LTR MaLR 44 155 -204 2 1070 2160 148 116 5 chr9 63646306 63646693 -60429479 + RLTR24 LTR ERV1 1 430 -99 2 1070 1765 209 176 45 chr9 63646712 63647222 -60428950 - RMER20B LTR ERVK -41 586 10 2 1070 419 183 0 0 chr9 63647245 63647316 -60428856 + RLTR24 LTR ERV1 459 529 0 2 1070 491 258 63 16 chr9 63647316 63647425 -60428747 - RSINE1 SINE B4 -49 116 2 2 1070 357 125 0 0 chr9 63647454 63647510 -60428662 + (T)n Simple_repeat Simple_repeat 1 56 0 2 1070 1164 82 0 0 chr9 63647510 63647656 -60428516 - B1_Mus2 SINE Alu 0 147 2 2 1070 524 116 12 0 chr9 63647712 63647798 -60428374 + (GA)n Simple_repeat Simple_repeat 1 87 0 2 1070 2476 198 156 3 chr9 63647834 63648432 -60427740 + RMER1B Other Other 233 921 -145 2 1070 640 182 7 20 chr9 63649616 63649767 -60426405 + RMER1B Other Other 915 1063 -3 2 1070 762 199 152 11 chr9 63650606 63650784 -60425388 + B3 SINE B2 14 216 0 2 1070 201 311 36 58 chr9 63650869 63650993 -60425179 - MIRb SINE MIR -96 180 55 2 1070 925 206 84 70 chr9 63651652 63651939 -60424233 - B4 SINE B4 0 292 2 2 1070 186 43 0 0 chr9 63652254 63652277 -60423895 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1070 206 62 31 0 chr9 63652439 63652471 -60423701 + (TCTG)n Simple_repeat Simple_repeat 1 33 0 2 1070 214 125 40 40 chr9 63652497 63652547 -60423625 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 2 1070 848 173 14 7 chr9 63652548 63652688 -60423484 - B1_Mur2 SINE Alu -6 143 3 2 1070 245 284 62 10 chr9 63653049 63653145 -60423027 + L2c LINE L2 3284 3384 -3 2 1070 420 20 0 0 chr9 63653244 63653293 -60422879 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2 1070 615 275 56 0 chr9 63653315 63653457 -60422715 + ID_B1 SINE B4 20 169 -55 2 1070 243 375 39 0 chr9 63653487 63653591 -60422581 - MIR3 SINE MIR -1 207 100 2 1070 750 269 75 29 chr9 63654761 63655040 -60421132 + B4A SINE B4 1 292 0 2 1070 251 71 24 0 chr9 63655402 63655444 -60420728 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 2 1070 329 307 0 0 chr9 63656117 63656192 -60419980 - B4A SINE B4 -4 288 214 2 1070 1167 186 29 0 chr9 63656205 63656409 -60419763 - B3 SINE B2 -6 210 1 2 1070 252 258 0 0 chr9 63656614 63656676 -60419496 - L1MD LINE L1 -1367 4779 4718 2 1070 1404 201 23 8 chr9 63656925 63657190 -60418982 + B4A SINE B4 1 269 -23 2 1070 783 72 0 0 chr9 63657190 63657301 -60418871 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1070 294 229 26 172 chr9 63657791 63657907 -60418265 - PB1 SINE Alu -22 105 7 2 1070 623 234 0 0 chr9 63657805 63657912 -60418260 - ID_B1 SINE B4 -35 189 83 2 1070 532 281 8 0 chr9 63657906 63658027 -60418145 - ID_B1 SINE B4 -102 122 1 2 1070 203 182 54 18 chr9 63658402 63658458 -60417714 + (TCCG)n Simple_repeat Simple_repeat 2 59 0 2 1070 367 239 168 20 chr9 63659049 63659199 -60416973 + B4 SINE B4 1 194 -98 3 1070 185 279 0 0 chr9 63660241 63660284 -60415888 + MIR SINE MIR 215 257 -5 3 1070 1086 261 35 66 chr9 63660302 63660589 -60415583 + B4 SINE B4 2 279 -13 3 1070 1101 285 30 72 chr9 63660683 63660726 -60415446 + MTE2a LTR MaLR 19 54 -365 3 1070 1200 36 149 46 chr9 63660726 63660901 -60415271 - B2_Mm1t SINE B2 0 193 1 3 1070 1263 234 46 77 chr9 63660901 63661274 -60414898 + MTE2a LTR MaLR 53 405 -14 3 1070 404 169 156 0 chr9 63661313 63661390 -60414782 + B1_Mur3 SINE Alu 61 149 0 3 1070 291 297 102 0 chr9 63661431 63661549 -60414623 - MLT1F1-int LTR MaLR -872 617 488 3 1070 530 260 279 32 chr9 63662251 63662624 -60413548 - MLT1F1-int LTR MaLR -1023 466 2 3 1070 268 336 51 29 chr9 63662625 63662763 -60413409 - MLT1F1 LTR MaLR 0 569 429 3 1070 807 238 150 85 chr9 63662764 63663126 -60413046 - MTE2a LTR MaLR -13 394 10 3 1070 656 314 71 30 chr9 63663146 63663421 -60412751 - MLT1F1 LTR MaLR -187 382 87 3 1070 582 267 98 4 chr9 63663754 63663939 -60412233 + L1MD LINE L1 4053 4255 -1891 3 1070 204 40 0 0 chr9 63663939 63663964 -60412208 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1070 582 267 98 4 chr9 63663964 63664034 -60412138 + L1MD LINE L1 4256 4331 -1815 3 1070 397 313 36 43 chr9 63664045 63664185 -60411987 - B1F2 SINE Alu -10 139 1 3 1070 457 291 57 17 chr9 63664259 63664445 -60411727 - MLT1F1-int LTR MaLR -476 1013 781 3 1070 466 252 146 70 chr9 63664445 63664616 -60411556 + B3A SINE B2 1 184 -14 3 1070 24 53 0 0 chr9 63664616 63664654 -60411518 + AT_rich Low_complexity Low_complexity 1 38 0 3 1070 1181 83 47 6 chr9 63664842 63665011 -60411161 - B2_Mm2 SINE B2 -18 177 2 3 1070 315 301 123 46 chr9 63665033 63665228 -60410944 + L1MC LINE L1 4644 4853 -1293 3 1070 267 175 70 0 chr9 63665244 63665301 -60410871 - B3 SINE B2 -4 212 152 3 1070 1108 205 32 0 chr9 63665341 63665531 -60410641 - B3 SINE B2 -19 197 2 3 1070 636 267 16 67 chr9 63665535 63665788 -60410384 - L1M4 LINE L1 -759 5387 5148 3 1070 759 298 52 43 chr9 63665927 63666373 -60409799 + L1M4 LINE L1 5254 5703 -475 3 1070 219 224 207 0 chr9 63666406 63666464 -60409708 - B1F1 SINE Alu -1 148 79 3 1070 328 243 8 116 chr9 63666444 63666565 -60409607 - B1F SINE Alu -22 127 20 3 1070 999 228 34 0 chr9 63666581 63666787 -60409385 - B3 SINE B2 -3 213 1 3 1070 427 254 161 0 chr9 63667328 63667446 -60408726 + RSINE1 SINE B4 1 137 -28 3 1070 1001 101 7 13 chr9 63667535 63667686 -60408486 - B1_Mur4 SINE Alu 0 150 1 3 1070 440 304 17 42 chr9 63667712 63667832 -60408340 + RSINE1 SINE B4 49 165 0 3 1070 279 269 13 13 chr9 63667833 63667912 -60408260 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 3 1070 607 248 8 0 chr9 63667964 63668089 -60408083 + ID_B1 SINE B4 95 220 -4 3 1070 225 217 100 0 chr9 63668036 63668096 -60408076 + FAM SINE Alu 243 308 -3 3 1070 186 344 86 0 chr9 63668118 63668246 -60407926 - L2c LINE L2 -231 3156 3018 3 1070 697 230 37 13 chr9 63668596 63668780 -60407392 + B3 SINE B2 1 192 -3 3 1070 674 230 24 0 chr9 63668788 63668914 -60407258 + B1_Mur1 SINE Alu 18 146 -3 3 1070 459 152 0 0 chr9 63668954 63669066 -60407106 + GA-rich Low_complexity Low_complexity 1 112 0 3 1070 703 216 88 6 chr9 63669077 63669259 -60406913 + B3A SINE B2 1 197 -1 3 1070 369 302 91 4 chr9 63669326 63669483 -60406689 + B3A SINE B2 42 215 -1 3 1070 530 266 253 6 chr9 63670016 63670190 -60405982 + ID_B1 SINE B4 7 223 -1 3 1070 260 303 26 13 chr9 63670261 63670338 -60405834 + MER45A DNA Tip100 61 138 -40 3 1070 731 264 145 42 chr9 63670611 63670852 -60405320 + B4A SINE B4 27 292 0 3 1070 528 214 120 25 chr9 63670873 63671031 -60405141 - MER53 DNA hAT -6 187 15 3 1070 183 242 0 0 chr9 63671787 63671820 -60404352 + MIRm SINE MIR 118 150 -126 3 1070 329 197 0 0 chr9 63671976 63672037 -60404135 - PB1D10 SINE Alu -17 100 40 3 1070 181 154 0 0 chr9 63672641 63672667 -60403505 + L2c LINE L2 3286 3311 -76 3 1070 491 311 43 0 chr9 63673062 63673223 -60402949 - MIRb SINE MIR -35 233 66 3 1070 634 241 36 0 chr9 63673480 63673617 -60402555 + B4A SINE B4 1 142 -150 3 1070 330 26 0 0 chr9 63673702 63673741 -60402431 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1070 1499 57 15 20 chr9 63675523 63675719 -60400453 + B2_Mm2 SINE B2 1 195 0 3 1070 605 196 0 0 chr9 63675886 63675983 -60400189 + PB1D10 SINE Alu 19 115 -2 3 1070 21 36 0 0 chr9 63676179 63676207 -60399965 + AT_rich Low_complexity Low_complexity 1 28 0 3 1070 751 263 88 74 chr9 63676379 63676744 -60399428 - MTE2a LTR MaLR -5 374 5 3 1070 459 329 6 12 chr9 63677033 63677193 -60398979 - ERVL-E-int LTR ERVL -859 4808 4650 3 1070 1260 48 0 0 chr9 63677196 63677343 -60398829 + B1_Mus2 SINE Alu 1 147 0 3 1070 1519 214 54 39 chr9 63677710 63678087 -60398085 + RMER1C Other Other 920 1306 -36 3 1070 1213 55 0 7 chr9 63678087 63678235 -60397937 + B1_Mus2 SINE Alu 1 147 0 3 1070 1519 214 54 39 chr9 63678235 63678266 -60397906 + RMER1C Other Other 1307 1334 -8 3 1070 607 246 33 27 chr9 63678339 63678497 -60397675 + B3A SINE B2 7 162 -31 3 1070 189 0 0 0 chr9 63678497 63678518 -60397654 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1070 216 319 76 83 chr9 63678518 63678538 -60397634 + B2_Mm1t SINE B2 163 183 -10 3 1070 244 304 128 51 chr9 63678937 63679093 -60397079 - MIR SINE MIR -81 181 14 3 1070 545 204 10 10 chr9 63679121 63679225 -60396947 + RSINE1 SINE B4 2 105 -60 3 1070 387 257 18 9 chr9 63679210 63679320 -60396852 - MTB_Mm LTR MaLR -296 111 1 3 1070 1656 173 77 21 chr9 63679333 63679669 -60396503 + MTD LTR MaLR 29 383 -36 3 1070 270 0 0 0 chr9 63679669 63679699 -60396473 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1070 1005 200 55 0 chr9 63679723 63679923 -60396249 + B3 SINE B2 6 216 0 3 1070 1133 99 0 0 chr9 63679954 63680096 -60396076 + B1_Mus1 SINE Alu 1 142 -6 3 1070 282 258 52 0 chr9 63680115 63680212 -60395960 + L1MC3 LINE L1 7091 7192 -593 3 1070 822 237 72 16 chr9 63680340 63680533 -60395639 + ID_B1 SINE B4 8 211 -13 3 1070 228 311 14 0 chr9 63681231 63681305 -60394867 - MLT1N2 LTR MaLR -338 224 150 3 1070 702 194 23 0 chr9 63682776 63682951 -60393221 + GA-rich Low_complexity Low_complexity 2 180 0 3 1070 219 358 7 15 chr9 63683172 63683308 -60392864 + CT-rich Low_complexity Low_complexity 1 135 0 3 1070 1148 227 104 4 chr9 63683874 63684144 -60392028 + MTEa LTR MaLR 72 368 -11 3 1070 639 277 149 5 chr9 63685282 63685496 -60390676 - B4A SINE B4 -47 245 1 3 1070 534 70 0 0 chr9 63685798 63685869 -60390303 + (CTG)n Simple_repeat Simple_repeat 1 71 0 3 1070 885 19 0 0 chr9 63685985 63686088 -60390084 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 3 1070 569 220 58 81 chr9 63686902 63687075 -60389097 + MER117 DNA MER1_type 18 186 -11 3 1070 348 337 28 40 chr9 63687725 63687901 -60388271 + MIRb SINE MIR 4 177 -91 3 1070 752 149 0 76 chr9 63688157 63688302 -60387870 + B1_Mur2 SINE Alu 11 144 -5 3 1070 238 279 91 23 chr9 63689737 63689825 -60386347 - MLT1I LTR MaLR 0 411 318 3 1070 1405 55 43 16 chr9 63690261 63690445 -60385727 - B2_Mm2 SINE B2 -5 190 2 3 1070 988 232 74 107 chr9 63690536 63690927 -60385245 - MTE2a LTR MaLR 0 379 2 3 1070 432 0 0 0 chr9 63691110 63691158 -60385014 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1070 1045 190 18 44 chr9 63692933 63693159 -60383013 - ID_B1 SINE B4 -2 222 3 3 1070 1686 26 0 0 chr9 63694126 63694318 -60381854 + B2_Mm1t SINE B2 2 193 0 3 1070 221 253 105 13 chr9 63694435 63694511 -60381661 - MIR3 SINE MIR -38 170 88 3 1070 959 324 22 135 chr9 63695040 63695421 -60380751 + RCHARR1 DNA MER1_type 38 361 -613 3 1070 1091 215 5 10 chr9 63695421 63695628 -60380544 - B3 SINE B2 -10 206 1 3 1070 959 324 22 135 chr9 63695628 63695749 -60380423 + RCHARR1 DNA MER1_type 362 483 -491 3 1070 1062 69 7 0 chr9 63695763 63695907 -60380265 + URR1A DNA MER1_type 82 226 0 3 1070 279 160 0 0 chr9 63695907 63695953 -60380219 + RCHARR1 DNA MER1_type 463 508 -466 3 1070 576 330 36 0 chr9 63696162 63696356 -60379816 + RCHARR1 DNA MER1_type 38 238 -736 3 1070 1156 271 69 19 chr9 63696333 63696694 -60379478 + RCHARR1 DNA MER1_type 596 974 0 3 1070 184 244 0 0 chr9 63696749 63696790 -60379382 - MIR SINE MIR -142 120 80 3 1070 443 287 134 41 chr9 63697073 63697342 -60378830 - MLT1J LTR MaLR -118 394 101 3 1070 835 219 35 5 chr9 63697450 63697647 -60378525 + B3 SINE B2 1 203 -13 3 1070 246 143 0 0 chr9 63697653 63697702 -60378470 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1070 218 227 0 0 chr9 63697714 63697758 -60378414 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1070 198 0 0 0 chr9 63698711 63698733 -60377439 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1070 1211 81 0 0 chr9 63698733 63698881 -60377291 - B1_Mus1 SINE Alu 0 148 1 3 1070 743 261 76 73 chr9 63699045 63699334 -60376838 + B4 SINE B4 3 292 0 3 1070 216 261 0 0 chr9 63699340 63699405 -60376767 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1070 234 0 0 0 chr9 63699572 63699598 -60376574 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 3 1070 375 78 0 0 chr9 63700504 63700555 -60375617 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1070 302 180 0 0 chr9 63700642 63700692 -60375480 - B4 SINE B4 -46 246 197 3 1070 1120 194 9 28 chr9 63700690 63700902 -60375270 - B3 SINE B2 -1 215 8 3 133 270 295 216 15 chr9 63700908 63701042 -60375130 - B4 SINE B4 -82 210 50 3 1071 418 61 30 0 chr9 63701423 63701489 -60374683 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1071 1221 61 0 0 chr9 63701583 63701730 -60374442 + B1_Mm SINE Alu 1 147 0 3 1071 214 211 0 0 chr9 63701730 63701768 -60374404 + A-rich Low_complexity Low_complexity 1 38 0 4 1071 259 352 81 27 chr9 63701925 63702074 -60374098 + MER77 LTR ERVL 233 389 -218 4 1071 443 266 141 26 chr9 63702162 63702432 -60373740 + L1MB2 LINE L1 5859 6159 -12 4 1071 677 239 5 62 chr9 63702474 63702684 -60373488 + B3A SINE B2 1 198 0 4 1071 532 168 23 6 chr9 63703156 63703330 -60372842 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 1071 278 123 18 0 chr9 63703355 63703412 -60372760 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1071 262 306 0 9 chr9 63703625 63703737 -60372435 + (TG)n Simple_repeat Simple_repeat 1 111 0 4 1071 389 107 0 0 chr9 63703743 63703799 -60372373 - HAL1-3A_ME LINE L1 -836 2022 1967 4 1071 414 0 0 0 chr9 63704585 63704631 -60371541 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1071 306 0 0 0 chr9 63704631 63704664 -60371508 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1071 652 258 30 8 chr9 63704803 63704936 -60371236 - RSINE1 SINE B4 -28 137 2 4 1071 273 296 30 145 chr9 63705724 63705764 -60370408 - ORR1E LTR MaLR -126 233 201 4 1071 207 0 0 0 chr9 63705764 63705787 -60370385 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1071 273 296 30 145 chr9 63705787 63705912 -60370260 - ORR1E LTR MaLR -159 200 87 4 1071 733 227 108 5 chr9 63706054 63706249 -60369923 + B3 SINE B2 2 216 0 4 1071 198 103 0 0 chr9 63706254 63706283 -60369889 + (GGA)n Simple_repeat Simple_repeat 3 31 0 4 1071 1085 199 24 0 chr9 63706699 63706910 -60369262 - B3 SINE B2 0 216 1 4 1071 464 245 13 59 chr9 63706910 63706962 -60369210 - LTR37A LTR ERV1 -4 422 374 4 1071 1834 153 17 101 chr9 63706962 63707163 -60369009 - ORR1D1 LTR MaLR 0 374 187 4 1071 1271 78 0 11 chr9 63707163 63707345 -60368827 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1071 1834 153 17 101 chr9 63707345 63707551 -60368621 - ORR1D1 LTR MaLR -188 186 1 4 1071 464 245 13 59 chr9 63707551 63707650 -60368522 - LTR37A LTR ERV1 -53 373 278 4 1071 229 294 29 80 chr9 63708214 63708351 -60367821 - Lx8 LINE L1 -292 7181 7052 4 1071 262 284 184 10 chr9 63708475 63708578 -60367594 + MIR3 SINE MIR 45 165 -43 4 1071 432 0 0 0 chr9 63708584 63708632 -60367540 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1071 372 304 56 55 chr9 63708691 63708919 -60367253 + MIRb SINE MIR 6 245 -23 4 1071 421 280 74 34 chr9 63709688 63709836 -60366336 - MLT1A1 LTR MaLR -7 401 248 4 1071 698 301 23 68 chr9 63710070 63710136 -60366036 - B3A SINE B2 -4 212 153 4 1071 510 61 0 0 chr9 63710136 63710202 -60365970 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1071 698 305 22 28 chr9 63710202 63710356 -60365816 - B3A SINE B2 -43 155 2 4 1071 1047 282 55 27 chr9 63710832 63711197 -60364975 + MTEa LTR MaLR 1 375 -4 4 1071 1259 191 5 0 chr9 63712644 63712859 -60363313 + ID_B1 SINE B4 1 216 -8 4 1071 264 333 56 0 chr9 63713174 63713282 -60362890 - MER5A DNA MER1_type -74 115 2 4 1071 655 227 47 0 chr9 63713582 63713710 -60362462 - B3 SINE B2 -77 139 6 4 1071 1999 125 73 0 chr9 63713716 63714021 -60362151 + MTC LTR MaLR 1 328 -93 4 1071 2032 163 49 0 chr9 63714021 63714371 -60361801 + ORR1B2 LTR MaLR 1 367 0 4 1071 355 233 133 0 chr9 63714371 63714459 -60361713 + MTC LTR MaLR 320 419 0 4 1071 440 119 2 3 chr9 63714459 63714531 -60361641 - ORR1C1 LTR MaLR -18 403 314 4 1071 1788 193 48 56 chr9 63714536 63714998 -60361174 + RMER1C Other Other 881 1338 -4 4 1071 1362 186 60 50 chr9 63715019 63715336 -60360836 - ORR1C1 LTR MaLR -58 320 1 4 1071 5439 215 43 25 chr9 63715336 63715909 -60360263 - ORR1C1-int LTR MaLR -2 1368 770 4 1071 603 0 0 0 chr9 63715909 63715976 -60360196 + (TTTTG)n Simple_repeat Simple_repeat 2 68 0 4 1071 1177 44 0 0 chr9 63715978 63716113 -60360059 - B1_Mus2 SINE Alu -12 135 1 4 1071 5439 215 43 25 chr9 63716113 63716734 -60359438 - ORR1C1-int LTR MaLR -601 769 150 4 1071 714 172 67 0 chr9 63717191 63717325 -60358847 - ORR1C1-int LTR MaLR -1366 143 1 4 1071 1087 190 45 5 chr9 63717325 63717526 -60358646 - ORR1C1 LTR MaLR 0 384 176 4 1071 1022 194 132 15 chr9 63717710 63717982 -60358190 - Lx8 LINE L1 -326 7147 6844 4 1071 2651 103 174 0 chr9 63718036 63718415 -60357757 - RLTR41 LTR ERV1 0 446 2 4 1071 926 162 0 18 chr9 63718473 63718636 -60357536 + ORR1B1 LTR MaLR 1 160 -207 4 1071 181 118 19 19 chr9 63718655 63718707 -60357465 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 4 1071 784 21 0 21 chr9 63718708 63718805 -60357367 - B1_Mus2 SINE Alu -1 146 52 4 1071 610 197 39 78 chr9 63718806 63718960 -60357212 + RMER20B LTR ERVK 6 153 -474 4 1071 1396 105 18 22 chr9 63719186 63719420 -60356752 + ORR1B1 LTR MaLR 133 386 -8 4 1071 634 297 38 5 chr9 63719512 63719698 -60356474 - MLT1F1 LTR MaLR -346 223 32 4 1071 318 319 8 89 chr9 63719973 63720097 -60356075 + PB1D10 SINE Alu 2 115 -2 4 1071 446 351 109 48 chr9 63720124 63720519 -60355653 - L1MEd LINE L1 -4159 1990 1575 4 1071 1300 98 43 0 chr9 63720519 63720703 -60355469 - B2_Mm2 SINE B2 -3 192 1 4 1071 446 351 109 48 chr9 63720703 63720804 -60355368 - L1MEd LINE L1 -4575 1574 1464 4 1071 522 0 0 0 chr9 63720838 63720896 -60355276 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1071 277 271 29 0 chr9 63720896 63720966 -60355206 - B3A SINE B2 -44 154 83 4 1071 519 330 146 17 chr9 63721043 63721469 -60354703 - L1MEd LINE L1 -4848 1377 872 4 1071 261 40 0 74 chr9 63721469 63721523 -60354649 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 4 1071 341 219 27 0 chr9 63721543 63721616 -60354556 + B1_Mur4 SINE Alu 19 93 -57 4 1071 296 310 40 79 chr9 63722074 63722200 -60353972 + PB1 SINE Alu 5 125 -2 4 1071 609 115 0 0 chr9 63722284 63722380 -60353792 + (GGGA)n Simple_repeat Simple_repeat 2 97 0 4 1071 1170 34 0 13 chr9 63722451 63722600 -60353572 + B1_Mus2 SINE Alu 1 147 0 4 1071 28 48 0 0 chr9 63722602 63722644 -60353528 + AT_rich Low_complexity Low_complexity 1 42 0 4 1071 608 191 79 0 chr9 63722825 63722951 -60353221 + B1_Mur1 SINE Alu 14 149 0 4 1071 314 98 20 0 chr9 63722951 63723002 -60353170 + (GAAAA)n Simple_repeat Simple_repeat 3 54 0 4 1071 728 250 10 39 chr9 63723079 63723283 -60352889 + B3A SINE B2 1 198 0 4 1071 336 267 22 11 chr9 63723501 63723592 -60352580 - MIR SINE MIR -74 188 97 4 1071 198 0 0 0 chr9 63724775 63724797 -60351375 + (CCCCCG)n Simple_repeat Simple_repeat 2 23 0 4 1071 206 260 0 0 chr9 63725074 63725124 -60351048 - MIRc SINE MIR -132 136 87 4 1071 802 257 77 2 chr9 63725166 63725382 -60350790 - ID_B1 SINE B4 -63 229 2 4 1071 461 224 185 7 chr9 63726106 63726241 -60349931 - RSINE1 SINE B4 -4 161 3 4 1071 352 278 11 0 chr9 63726246 63726336 -60349836 - PB1D10 SINE Alu 0 117 27 4 1071 1424 55 0 6 chr9 63726496 63726677 -60349495 - B2_Mm2 SINE B2 -14 181 2 4 1071 185 196 0 19 chr9 63727177 63727199 -60348973 + polypurine Low_complexity Low_complexity 2 23 0 4 1071 333 0 0 0 chr9 63727199 63727236 -60348936 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1071 185 196 0 19 chr9 63727236 63727265 -60348907 + polypurine Low_complexity Low_complexity 24 52 0 4 1071 447 271 62 8 chr9 63727271 63727286 -60348886 - B1F1 SINE Alu -12 137 1 4 1071 451 278 43 0 chr9 63727286 63727401 -60348771 - ID_B1 SINE B4 -23 201 82 4 1071 266 346 59 11 chr9 63727673 63727860 -60348312 - MER91A DNA Tip100 0 196 1 4 1071 189 107 0 0 chr9 63728145 63728173 -60347999 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1071 324 231 88 44 chr9 63728183 63728296 -60347876 + Lx7 LINE L1 7563 7680 -16 4 1071 438 20 0 0 chr9 63729787 63729838 -60346334 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1071 619 187 67 0 chr9 63730074 63730208 -60345964 + B1_Mur1 SINE Alu 2 144 -5 4 1071 905 223 113 51 chr9 63730211 63730394 -60345778 + ORR1E LTR MaLR 45 248 -111 4 1071 264 120 0 0 chr9 63730394 63730444 -60345728 + (CCTG)n Simple_repeat Simple_repeat 3 52 0 4 1071 905 218 120 47 chr9 63730444 63730555 -60345617 + ORR1E LTR MaLR 249 357 -2 4 1071 1323 274 31 70 chr9 63730563 63731080 -60345092 + L1MB3 LINE L1 5623 6119 -64 4 1071 447 228 11 0 chr9 63731157 63731249 -60344923 + RSINE1 SINE B4 8 100 -65 4 1071 405 0 0 0 chr9 63731298 63731343 -60344829 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 4 1071 209 163 0 44 chr9 63731503 63731548 -60344624 + CT-rich Low_complexity Low_complexity 1 43 0 4 1071 714 55 0 0 chr9 63732224 63732315 -60343857 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 4 1071 361 335 188 26 chr9 63732383 63732766 -60343406 + L3 LINE CR1 3341 3785 -704 4 1071 252 233 0 62 chr9 63733283 63733347 -60342825 + B4A SINE B4 2 61 -231 4 1071 483 60 0 0 chr9 63733391 63733458 -60342714 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 1071 886 219 160 16 chr9 63733842 63734092 -60342080 + B4A SINE B4 1 286 -6 4 1071 286 107 36 0 chr9 63734123 63734179 -60341993 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1071 255 232 33 89 chr9 63734656 63734746 -60341426 + B1F SINE Alu 36 120 -29 4 1071 189 0 0 0 chr9 63734779 63734800 -60341372 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1071 403 253 110 114 chr9 63734907 63735188 -60340984 - B4 SINE B4 -11 281 2 4 1071 249 180 0 0 chr9 63735685 63735735 -60340437 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1071 637 285 161 4 chr9 63735760 63736003 -60340169 - B4A SINE B4 -7 285 5 4 1071 555 248 44 29 chr9 63736078 63736215 -60339957 + ID_B1 SINE B4 79 217 -7 4 1071 200 114 0 28 chr9 63736244 63736280 -60339892 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1071 446 242 148 0 chr9 63736301 63736429 -60339743 - RSINE1 SINE B4 -16 149 3 4 1071 690 169 0 0 chr9 63736618 63736736 -60339436 + RSINE1 SINE B4 25 142 -23 4 1071 555 184 8 26 chr9 63736775 63736892 -60339280 - PB1D9 SINE Alu -3 117 3 4 1071 375 60 0 0 chr9 63737711 63737761 -60338411 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1071 262 244 24 24 chr9 63737783 63737867 -60338305 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 4 1071 203 271 0 17 chr9 63737879 63737999 -60338173 + (TATATG)n Simple_repeat Simple_repeat 6 123 0 4 1071 225 273 12 6 chr9 63737985 63738147 -60338025 + (TG)n Simple_repeat Simple_repeat 1 163 0 4 1071 730 204 202 51 chr9 63738176 63738429 -60337743 - B4 SINE B4 -1 291 1 4 1071 676 180 214 0 chr9 63739452 63739630 -60336542 + B3 SINE B2 1 216 0 4 1071 3036 63 2 2 chr9 63741080 63741480 -60334692 + MTB LTR MaLR 1 400 0 5 1071 819 249 5 43 chr9 63741627 63741837 -60334335 + B4 SINE B4 81 282 -10 5 1071 588 53 0 0 chr9 63741875 63741951 -60334221 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1071 391 292 36 7 chr9 63742136 63742274 -60333898 + MLT1A0 LTR MaLR 70 211 -154 5 1071 624 274 24 57 chr9 63742308 63742434 -60333738 - RMER30 DNA MER1_type 0 202 77 5 1071 3276 137 39 16 chr9 63742434 63743005 -60333167 + RMER4B LTR ERVK 1 584 -1 5 1071 624 274 24 57 chr9 63743005 63743087 -60333085 - RMER30 DNA MER1_type -126 76 1 5 1071 814 214 100 79 chr9 63743730 63744009 -60332163 - B4 SINE B4 -6 286 2 5 1071 184 237 81 48 chr9 63744564 63744626 -60331546 - L2b LINE L2 -15 3360 3297 5 1071 447 106 0 0 chr9 63744649 63744715 -60331457 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1071 297 214 78 112 chr9 63744721 63744837 -60331335 - RSINE1 SINE B4 -1 164 53 5 1071 351 135 187 13 chr9 63744778 63744853 -60331319 - B2_Mm2 SINE B2 -71 124 37 5 1071 318 148 0 0 chr9 63744871 63744925 -60331247 + (TCC)n Simple_repeat Simple_repeat 2 55 0 5 1071 577 227 60 60 chr9 63745279 63745495 -60330677 + B3 SINE B2 1 216 0 5 1071 272 216 0 0 chr9 63745498 63745549 -60330623 + B4 SINE B4 15 65 -227 5 1071 368 283 93 9 chr9 63745612 63745719 -60330453 + B4 SINE B4 77 192 -100 5 1071 22 35 0 0 chr9 63745887 63745916 -60330256 + AT_rich Low_complexity Low_complexity 1 29 0 5 1071 574 239 74 46 chr9 63747292 63747454 -60328718 + ID_B1 SINE B4 60 224 0 5 1071 981 205 20 5 chr9 63747923 63748124 -60328048 - B3 SINE B2 -11 205 2 5 1071 483 313 95 44 chr9 63748124 63748418 -60327754 + L1MB5 LINE L1 5853 6161 -13 5 1071 221 289 35 24 chr9 63748425 63748510 -60327662 + B2_Mm1t SINE B2 1 86 -107 5 1071 700 202 0 0 chr9 63748434 63748553 -60327619 + RSINE1 SINE B4 11 129 -36 5 1071 27 49 0 0 chr9 63748591 63748632 -60327540 + AT_rich Low_complexity Low_complexity 1 41 0 5 1071 763 238 28 36 chr9 63748712 63748919 -60327253 - B3A SINE B2 -4 191 4 5 1071 2815 114 2 7 chr9 63749075 63749498 -60326674 - MTC LTR MaLR 0 421 1 5 1071 35 54 0 0 chr9 63749511 63749567 -60326605 + AT_rich Low_complexity Low_complexity 1 56 0 5 1071 192 97 0 0 chr9 63749580 63749611 -60326561 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1071 608 264 5 107 chr9 63749617 63749804 -60326368 - B3A SINE B2 -30 168 1 5 1071 1569 185 139 6 chr9 63749813 63750166 -60326006 - MTD LTR MaLR -14 405 6 5 1071 189 107 0 0 chr9 63750169 63750197 -60325975 + (CATA)n Simple_repeat Simple_repeat 3 30 0 5 1071 436 101 14 0 chr9 63750364 63750433 -60325739 - RLTR20D LTR ERVK 0 568 499 5 1071 1434 134 59 46 chr9 63750434 63750740 -60325432 + MYSERV16_I-int LTR ERVK 2011 2320 -6 5 1071 1332 209 82 66 chr9 63750746 63751143 -60325029 + RLTR16 LTR ERVK 1 397 -108 5 1071 474 18 0 0 chr9 63751143 63751198 -60324974 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1071 1332 209 82 66 chr9 63751198 63751297 -60324875 + RLTR16 LTR ERVK 398 505 0 5 1071 822 250 20 15 chr9 63751672 63751871 -60324301 + B3 SINE B2 17 216 0 5 1071 397 266 29 45 chr9 63752036 63752169 -60324003 - MIRm SINE MIR -45 223 83 5 1071 253 247 121 24 chr9 63752174 63752257 -60323915 - Tigger7 DNA MER2_type -4 2487 2397 5 1071 808 198 75 10 chr9 63752420 63752619 -60323553 + B3 SINE B2 1 212 -4 5 1071 1087 159 20 29 chr9 63752645 63752880 -60323292 + ORR1D1 LTR MaLR 1 211 -163 5 1071 365 263 104 102 chr9 63752907 63753074 -60323098 - L1MEf LINE L1 -5161 1479 1298 5 1071 240 35 0 0 chr9 63753074 63753103 -60323069 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 5 1071 905 109 7 33 chr9 63753103 63753255 -60322917 - B1_Mus1 SINE Alu 0 148 1 5 1071 365 263 104 102 chr9 63753255 63753395 -60322777 - L1MEf LINE L1 -5343 1297 1161 5 1071 270 0 0 0 chr9 63753395 63753425 -60322747 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 5 1071 365 263 104 102 chr9 63753425 63753463 -60322709 - L1MEf LINE L1 -5480 1160 1131 5 1071 261 57 0 0 chr9 63753463 63753498 -60322674 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1071 1075 51 0 7 chr9 63753498 63753637 -60322535 - B1_Mus1 SINE Alu -8 140 3 5 1071 365 263 104 102 chr9 63753637 63753689 -60322483 - L1MEf LINE L1 -5510 1130 1079 5 1071 1355 194 122 73 chr9 63753713 63754110 -60322062 - MTD LTR MaLR -14 405 2 5 1071 279 306 82 66 chr9 63754111 63754307 -60321865 - L1MEf LINE L1 -5486 1061 863 5 1071 812 239 31 7 chr9 63754941 63755149 -60321023 + B4A SINE B4 11 230 -62 5 1071 780 195 126 5 chr9 63755149 63755340 -60320832 + B3 SINE B2 2 215 -1 5 1071 454 237 104 9 chr9 63755368 63755483 -60320689 + RSINE1 SINE B4 5 130 -35 5 1071 293 118 0 19 chr9 63755494 63755546 -60320626 + (GGA)n Simple_repeat Simple_repeat 2 52 0 5 1071 276 220 80 139 chr9 63755678 63755815 -60320357 + LTR16B2 LTR ERVL 334 462 0 5 1071 270 255 9 109 chr9 63756077 63756118 -60320054 + MT2B LTR ERVL 127 156 -445 5 1071 502 81 63 3 chr9 63756118 63756219 -60319953 + B1_Mus1 SINE Alu 1 120 0 5 1071 276 155 50 33 chr9 63756358 63756418 -60319754 + MIRc SINE MIR 84 144 -124 5 1071 227 222 25 0 chr9 63756707 63756788 -60319384 + T-rich Low_complexity Low_complexity 5 87 0 5 1071 963 47 16 0 chr9 63756788 63756915 -60319257 - B1_Mus1 SINE Alu 0 148 20 5 1071 453 36 0 0 chr9 63757429 63757484 -60318688 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1071 1430 207 126 9 chr9 63757811 63758137 -60318035 - MTD LTR MaLR -14 405 42 5 1071 751 121 65 0 chr9 63758730 63758854 -60317318 + RMER19B LTR ERVK 1 132 -770 5 1071 1111 183 43 35 chr9 63758836 63759068 -60317104 + RMER19B LTR ERVK 55 288 -614 5 1071 236 321 25 0 chr9 63759309 63759390 -60316782 - MIR SINE MIR -80 182 100 5 1071 532 248 181 10 chr9 63759465 63759669 -60316503 + B4A SINE B4 10 248 -44 5 1071 417 123 0 0 chr9 63759698 63759763 -60316409 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1071 247 306 97 0 chr9 63759782 63759854 -60316318 + PB1D10 SINE Alu 30 108 -9 5 1071 676 285 14 14 chr9 63759898 63760115 -60316057 + L1MC LINE L1 5339 5555 -2327 5 1071 293 244 13 0 chr9 63760153 63760231 -60315941 - ID4_ SINE ID 0 83 5 5 1071 1108 101 53 0 chr9 63760277 63760446 -60315726 + B2_Mm1t SINE B2 2 179 -14 5 1071 295 146 0 35 chr9 63760480 63760537 -60315635 + B2_Mm2 SINE B2 47 101 -94 5 1071 290 89 0 0 chr9 63760536 63760592 -60315580 + B2_Mm1t SINE B2 138 193 0 5 1071 351 0 0 0 chr9 63760811 63760850 -60315322 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1071 599 246 8 0 chr9 63760875 63760993 -60315179 - B3A SINE B2 -78 120 2 5 1071 1389 51 17 0 chr9 63761113 63761290 -60314882 + B2_Mm2 SINE B2 2 181 -14 5 1071 1034 82 7 7 chr9 63761290 63761437 -60314735 + B1_Mus1 SINE Alu 2 148 0 5 1071 422 246 49 42 chr9 63761443 63761587 -60314585 + RSINE1 SINE B4 5 149 -16 5 1071 325 244 0 12 chr9 63761750 63761833 -60314339 + ID4_ SINE ID 2 83 0 5 1071 1156 96 11 0 chr9 63761895 63762072 -60314100 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 1071 260 154 0 19 chr9 63762072 63762125 -60314047 + CT-rich Low_complexity Low_complexity 2 53 0 5 1071 349 299 37 0 chr9 63762129 63762263 -60313909 - ID_B1 SINE B4 -84 140 2 5 1071 477 250 60 0 chr9 63762347 63762463 -60313709 + MTE2b LTR MaLR 201 323 -56 5 1071 226 159 23 0 chr9 63762463 63762507 -60313665 + GA-rich Low_complexity Low_complexity 2 46 0 5 1071 417 342 61 22 chr9 63762588 63762818 -60313354 + L1M5 LINE L1 5552 5790 -389 5 1071 317 222 12 12 chr9 63762979 63763061 -60313111 + L1ME1 LINE L1 6040 6121 -58 5 1071 315 296 125 16 chr9 63764144 63764272 -60311900 + MIR SINE MIR 8 150 -58 5 1071 228 348 11 21 chr9 63764477 63764571 -60311601 + MIRm SINE MIR 61 153 -123 5 1071 437 234 54 39 chr9 63765203 63765332 -60310840 + L1MC5 LINE L1 7700 7830 -131 5 1071 310 304 70 56 chr9 63765518 63765593 -60310579 + RSINE1 SINE B4 14 90 -75 5 1071 860 19 9 0 chr9 63765593 63765699 -60310473 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 5 1071 310 304 70 56 chr9 63765699 63765766 -60310406 + RSINE1 SINE B4 91 157 -8 5 1071 21 0 0 0 chr9 63765808 63765829 -60310343 + AT_rich Low_complexity Low_complexity 1 21 0 5 1071 1238 101 17 0 chr9 63765837 63766015 -60310157 + B2_Mm2 SINE B2 1 181 -14 5 1071 21 0 0 0 chr9 63766015 63766036 -60310136 + AT_rich Low_complexity Low_complexity 1 21 0 5 1071 462 217 0 0 chr9 63766039 63766131 -60310041 + ID_B1 SINE B4 126 217 -7 5 1071 387 252 10 20 chr9 63767944 63768045 -60308127 - MTEa LTR MaLR -34 345 246 5 1071 878 222 138 72 chr9 63768259 63768608 -60307564 + RMER20B LTR ERVK 235 606 -21 5 1071 636 265 36 80 chr9 63768602 63768852 -60307320 - MTEa LTR MaLR -137 242 4 5 1071 2412 123 22 95 chr9 63769721 63769960 -60306212 + RMER4A LTR ERVK 1 239 -227 5 1071 1251 91 32 0 chr9 63769960 63770147 -60306025 + B2_Mm2 SINE B2 1 193 -2 5 1071 2412 123 22 95 chr9 63770147 63770410 -60305762 + RMER4A LTR ERVK 240 466 0 5 1071 193 306 28 0 chr9 63770707 63770779 -60305393 + MIRc SINE MIR 51 124 -144 5 1071 352 281 94 58 chr9 63771341 63771564 -60304608 - L1ME2 LINE L1 -71 6093 5863 5 1071 851 143 57 0 chr9 63771642 63771782 -60304390 - B1_Mur3 SINE Alu -1 148 1 5 1071 822 214 94 10 chr9 63771931 63772134 -60304038 - ID_B1 SINE B4 -1 223 4 5 1071 490 264 34 27 chr9 63772141 63772289 -60303883 - B1F SINE Alu 0 149 1 5 1071 714 159 0 0 chr9 63772290 63772435 -60303737 + (TG)n Simple_repeat Simple_repeat 2 146 0 5 1071 639 241 8 0 chr9 63772443 63772576 -60303596 - B1F1 SINE Alu -11 138 5 5 1071 548 175 54 31 chr9 63773283 63773413 -60302759 + ID_B1 SINE B4 78 210 -14 5 1071 395 245 75 0 chr9 63774011 63774117 -60302055 - PB1D10 SINE Alu -1 116 3 5 1071 26 0 0 0 chr9 63774566 63774592 -60301580 + AT_rich Low_complexity Low_complexity 1 26 0 6 1071 593 218 0 8 chr9 63774628 63774762 -60301410 - B1_Mur3 SINE Alu -8 141 9 6 1071 268 303 34 0 chr9 63774889 63774978 -60301194 - MIRb SINE MIR -126 142 51 6 1071 212 287 66 44 chr9 63775049 63775140 -60301032 - B1F2 SINE Alu -48 101 9 6 1071 721 222 74 6 chr9 63775067 63775230 -60300942 - ID_B1 SINE B4 -50 174 1 6 1071 331 305 21 0 chr9 63776217 63776312 -60299860 - MamRep137 DNA TcMar? -164 280 184 6 1071 396 264 78 3 chr9 63777095 63777214 -60298958 - MLT1J LTR MaLR -327 185 36 6 1071 270 0 0 0 chr9 63777415 63777445 -60298727 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1071 1340 58 29 0 chr9 63777445 63777618 -60298554 - B2_Mm2 SINE B2 -16 179 2 6 1071 254 211 105 0 chr9 63777664 63777721 -60298451 + B1_Mur1 SINE Alu 82 144 -5 6 1071 21 0 0 0 chr9 63777721 63777742 -60298430 + AT_rich Low_complexity Low_complexity 1 21 0 6 1071 487 165 146 0 chr9 63777753 63777854 -60298318 + B3 SINE B2 5 120 -96 6 1071 978 272 54 45 chr9 63777854 63778040 -60298132 + ORR1C2 LTR MaLR 1 161 -351 6 1071 376 212 0 76 chr9 63778040 63778132 -60298040 + B3 SINE B2 38 122 -94 6 1071 978 272 54 45 chr9 63778132 63778259 -60297913 + ORR1C2 LTR MaLR 162 272 -240 6 1071 841 161 114 25 chr9 63778526 63778725 -60297447 + ORR1C2 LTR MaLR 114 382 -2 6 1071 21 71 0 0 chr9 63778792 63778834 -60297338 + AT_rich Low_complexity Low_complexity 1 42 0 6 1071 685 237 15 0 chr9 63778836 63778971 -60297201 + B3A SINE B2 1 137 -61 6 1071 1431 70 48 0 chr9 63779222 63779408 -60296764 + B2_Mm2 SINE B2 1 195 0 6 1071 1175 62 79 63 chr9 63779619 63779808 -60296364 + B2_Mm1t SINE B2 2 193 0 6 1071 572 330 76 55 chr9 63780019 63780560 -60295612 - MLT1F2 LTR MaLR 0 654 1 6 1071 428 225 35 26 chr9 63781108 63781222 -60294950 + MER31B LTR ERV1 1 115 -351 6 1071 1340 202 132 19 chr9 63781323 63781686 -60294486 - MTD LTR MaLR -15 404 1 6 1071 272 326 123 32 chr9 63782115 63782302 -60293870 + MLT1J LTR MaLR 276 479 -33 6 1071 315 0 0 0 chr9 63782524 63782559 -60293613 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1071 206 152 130 0 chr9 63782563 63782609 -60293563 - MIR SINE MIR -126 136 85 6 1071 631 164 77 15 chr9 63782686 63782816 -60293356 + B1_Mur3 SINE Alu 11 148 -1 6 1071 604 301 195 8 chr9 63782818 63783177 -60292995 - L1MC LINE L1 -1170 4976 4551 6 1071 785 186 65 12 chr9 63783200 63783369 -60292803 + ID_B1 SINE B4 45 222 -2 6 1071 877 145 0 16 chr9 63783425 63783681 -60292491 + (TG)n Simple_repeat Simple_repeat 1 251 0 6 1071 269 304 0 32 chr9 63785854 63785949 -60290223 - ID_B1 SINE B4 0 224 133 6 1071 339 316 76 85 chr9 63786063 63786274 -60289898 - B4 SINE B4 -1 291 83 6 1071 232 211 13 13 chr9 63786298 63786375 -60289797 + (TATG)n Simple_repeat Simple_repeat 1 77 0 6 1071 399 228 3 24 chr9 63786532 63786629 -60289543 - B4 SINE B4 -66 99 2 6 1071 239 330 26 35 chr9 63786643 63786756 -60289416 - PB1D10 SINE Alu -5 112 1 6 1071 275 284 61 44 chr9 63786763 63786877 -60289295 - MER5A1 DNA MER1_type -3 163 48 6 1071 1626 47 0 10 chr9 63786910 63787105 -60289067 + B2_Mm1a SINE B2 1 193 0 6 1071 314 36 0 0 chr9 63787105 63787160 -60289012 + B2_Mm1t SINE B2 139 193 0 6 1071 348 257 127 114 chr9 63787197 63787270 -60288902 - RMER30 DNA MER1_type -42 160 90 6 1071 180 0 0 0 chr9 63787270 63787290 -60288882 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 1071 348 257 127 114 chr9 63787290 63787374 -60288798 - RMER30 DNA MER1_type -113 89 1 6 1071 551 208 9 0 chr9 63787528 63787634 -60288538 + RSINE1 SINE B4 3 109 -56 6 1071 588 101 0 0 chr9 63787634 63787723 -60288449 + (TC)n Simple_repeat Simple_repeat 2 90 0 6 1071 198 0 0 0 chr9 63787723 63787745 -60288427 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1071 2226 151 79 3 chr9 63787976 63788104 -60288068 + ORR1B1 LTR MaLR 1 156 -238 6 1071 378 0 0 0 chr9 63788104 63788146 -60288026 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1071 2226 151 79 3 chr9 63788146 63788383 -60287789 + ORR1B1 LTR MaLR 157 393 -1 6 1071 2493 146 49 5 chr9 63788383 63788832 -60287340 + ORR1B1-int LTR MaLR 1 469 -1494 6 1071 1232 149 17 9 chr9 63788851 63789081 -60287091 - ORR1B1-int LTR MaLR 0 1509 1278 6 1071 873 223 57 26 chr9 63789035 63789265 -60286907 + ORR1B1 LTR MaLR 29 265 -129 6 1071 225 286 16 0 chr9 63789441 63789504 -60286668 - MER5A DNA MER1_type -125 64 1 6 1071 507 191 19 0 chr9 63790041 63790198 -60285974 + (CA)n Simple_repeat Simple_repeat 2 161 0 6 1071 189 0 0 0 chr9 63791035 63791056 -60285116 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1071 519 305 8 0 chr9 63791060 63791188 -60284984 - ID_B1 SINE B4 -42 182 54 6 1071 246 221 147 71 chr9 63791425 63791559 -60284613 + MIRc SINE MIR 58 203 -65 6 1071 291 279 29 0 chr9 63791565 63791633 -60284539 + ID4 SINE ID 8 77 -6 6 1071 224 305 23 78 chr9 63791693 63791821 -60284351 + MIRc SINE MIR 35 155 -113 6 1071 226 219 0 0 chr9 63791885 63791926 -60284246 + (CCA)n Simple_repeat Simple_repeat 3 43 0 6 1071 180 0 0 0 chr9 63792029 63792049 -60284123 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1071 967 71 0 0 chr9 63792049 63792176 -60283996 - B1_Mur4 SINE Alu -10 140 14 6 1071 311 300 50 0 chr9 63792206 63792306 -60283866 - MER5A DNA MER1_type -84 105 1 6 1071 406 268 105 23 chr9 63793282 63793454 -60282718 + B3A SINE B2 2 187 -11 6 1071 751 211 0 0 chr9 63793703 63793831 -60282341 - B1_Mur3 SINE Alu -21 128 1 6 1071 311 287 52 44 chr9 63794291 63794426 -60281746 + RSINE1 SINE B4 26 161 -4 6 1071 739 276 61 19 chr9 63794453 63794667 -60281505 - ID_B1 SINE B4 0 224 2 6 1071 1433 132 22 22 chr9 63795374 63795599 -60280573 - URR1B DNA MER1_type 0 225 1 6 1071 539 116 33 0 chr9 63795756 63795877 -60280295 + (TG)n Simple_repeat Simple_repeat 1 125 0 6 1071 277 327 57 43 chr9 63796034 63796245 -60279927 - MIR SINE MIR -2 260 47 6 1071 263 307 0 13 chr9 63796510 63796586 -60279586 + B4A SINE B4 217 291 -1 6 1071 211 299 7 15 chr9 63796602 63796738 -60279434 + (CATA)n Simple_repeat Simple_repeat 4 138 0 6 1071 284 255 134 18 chr9 63796879 63796991 -60279181 + MIR3 SINE MIR 66 190 -18 6 1071 242 199 74 65 chr9 63797737 63797855 -60278317 - MIRc SINE MIR -88 188 65 6 1071 1176 42 14 7 chr9 63798946 63799091 -60277081 + B1_Mm SINE Alu 1 146 -1 6 1071 577 287 31 25 chr9 63799111 63799272 -60276900 + RSINE1 SINE B4 1 162 -3 6 1071 349 265 19 38 chr9 63800658 63800764 -60275408 - ID_B1 SINE B4 -38 186 83 6 1071 203 161 0 0 chr9 63801032 63801063 -60275109 + polypurine Low_complexity Low_complexity 2 32 0 6 1071 23 68 0 0 chr9 63801177 63801221 -60274951 + AT_rich Low_complexity Low_complexity 1 44 0 6 1071 239 314 32 41 chr9 63802149 63802272 -60273900 - L2c LINE L2 -26 3361 3240 6 1071 261 247 195 0 chr9 63802489 63802566 -60273606 + PB1 SINE Alu 6 97 -30 6 1071 299 266 172 0 chr9 63802508 63802636 -60273536 + LTR89 LTR ERVL? 47 196 -683 6 1071 1015 110 7 40 chr9 63802723 63802874 -60273298 + B1_Mus1 SINE Alu 3 148 0 6 1071 459 0 0 0 chr9 63802880 63802931 -60273241 + (CAA)n Simple_repeat Simple_repeat 1 51 0 6 1071 709 121 59 22 chr9 63804127 63804262 -60271910 - URR1B DNA MER1_type 0 225 86 6 1071 274 149 0 0 chr9 63804325 63804372 -60271800 + MIR SINE MIR 93 139 -69 6 1071 315 0 0 0 chr9 63805113 63805148 -60271024 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1071 327 49 0 0 chr9 63805148 63805188 -60270984 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 1071 302 169 17 0 chr9 63805189 63805248 -60270924 - ID2 SINE ID -22 61 2 6 1071 215 318 47 16 chr9 63805492 63805556 -60270616 - MIR SINE MIR -103 105 40 6 1071 239 79 0 26 chr9 63806815 63806854 -60269318 + (GGA)n Simple_repeat Simple_repeat 3 40 0 6 1071 276 259 116 12 chr9 63807716 63807802 -60268370 - MIR SINE MIR -84 124 30 6 1071 206 222 60 60 chr9 63808605 63808672 -60267500 - MIR SINE MIR -86 122 56 6 1071 209 276 17 0 chr9 63808702 63808760 -60267412 + MIRc SINE MIR 27 85 -183 6 1071 283 298 0 23 chr9 63809229 63809315 -60266857 + MIR SINE MIR 88 171 -91 6 1071 369 0 0 0 chr9 63809528 63809569 -60266603 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1071 709 240 52 151 chr9 63809697 63810021 -60266151 - B4 SINE B4 0 292 1 6 1071 257 230 14 0 chr9 63811297 63811371 -60264801 + GA-rich Low_complexity Low_complexity 2 76 0 6 1071 578 224 53 26 chr9 63811706 63811857 -60264315 - ID_B1 SINE B4 -67 157 3 6 1071 216 127 339 18 chr9 63812684 63812740 -60263432 + B4 SINE B4 11 84 -208 6 1071 21 0 0 0 chr9 63813072 63813093 -60263079 + AT_rich Low_complexity Low_complexity 1 21 0 6 1071 546 312 56 0 chr9 63813124 63813268 -60262904 - RSINE1 SINE B4 -12 153 2 6 1071 193 356 47 28 chr9 63813272 63813379 -60262793 - MIRc SINE MIR -63 205 97 6 1071 546 315 71 16 chr9 63814077 63814261 -60261911 + ID_B1 SINE B4 4 197 -27 6 1071 338 277 25 59 chr9 63814414 63814533 -60261639 + PB1D10 SINE Alu 2 116 -1 6 1071 252 0 0 0 chr9 63814563 63814591 -60261581 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1071 251 250 141 0 chr9 63814921 63814985 -60261187 - ID4_ SINE ID -6 77 5 6 1071 452 185 54 36 chr9 63814994 63815106 -60261066 - PB1D10 SINE Alu -3 114 1 6 1071 264 59 0 0 chr9 63815802 63815836 -60260336 + (CAG)n Simple_repeat Simple_repeat 1 34 0 6 1071 1023 273 35 41 chr9 63815956 63816179 -60259993 + B4 SINE B4 1 215 -77 7 1071 243 0 0 0 chr9 63816179 63816206 -60259966 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1071 1023 273 35 41 chr9 63816206 63816272 -60259900 + B4 SINE B4 216 287 -5 7 1071 337 39 19 19 chr9 63816285 63816337 -60259835 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1071 235 219 0 0 chr9 63817058 63817113 -60259059 + ID4_ SINE ID 24 78 -74 7 1071 278 260 13 25 chr9 63818709 63818788 -60257384 - MER5A DNA MER1_type -57 132 55 7 1071 303 318 38 22 chr9 63819060 63819216 -60256956 + MIRc SINE MIR 32 192 -76 7 1071 1773 10 0 0 chr9 63819222 63819414 -60256758 + B2_Mm1a SINE B2 2 193 0 7 1071 697 123 26 0 chr9 63819844 63819958 -60256214 - B3A SINE B2 -81 117 1 7 1071 471 163 11 21 chr9 63820057 63820151 -60256021 + MTD LTR MaLR 327 419 0 7 1071 416 173 0 0 chr9 63820165 63820240 -60255932 + B1_Mur4 SINE Alu 15 89 -61 7 1071 364 208 13 0 chr9 63821284 63821361 -60254811 - B1_Mur2 SINE Alu -1 148 71 7 1071 180 0 0 0 chr9 63821962 63821982 -60254190 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1071 264 59 0 0 chr9 63822710 63822744 -60253428 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1071 216 279 58 11 chr9 63822842 63822929 -60253243 - MIR3 SINE MIR -37 171 81 7 1071 198 203 13 92 chr9 63822956 63823032 -60253140 + MIRm SINE MIR 34 103 -173 7 1071 248 360 0 18 chr9 63823074 63823187 -60252985 - MIR3 SINE MIR -87 121 11 7 1071 1035 179 5 10 chr9 63823316 63823508 -60252664 - URR1B DNA MER1_type -30 195 5 7 1071 190 281 17 17 chr9 63824616 63824674 -60251498 + MIR SINE MIR 87 144 -64 7 1071 221 246 16 0 chr9 63824696 63824757 -60251415 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1071 1206 242 58 7 chr9 63824762 63825037 -60251135 - B4A SINE B4 -3 289 1 7 1071 817 162 7 47 chr9 63826867 63827016 -60249156 + B1_Mus1 SINE Alu 1 143 -5 7 1071 591 155 0 0 chr9 63827016 63827119 -60249053 + GA-rich Low_complexity Low_complexity 2 104 0 7 1071 207 0 0 0 chr9 63827531 63827554 -60248618 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 7 1071 225 200 117 0 chr9 63827677 63827737 -60248435 + ID_B1 SINE B4 127 193 -31 7 1071 318 173 92 13 chr9 63828978 63829054 -60247118 - PB1 SINE Alu -2 125 44 7 1071 224 231 0 19 chr9 63829183 63829236 -60246936 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1071 725 225 168 16 chr9 63829236 63829480 -60246692 - B4A SINE B4 0 292 12 7 1071 202 150 25 0 chr9 63829558 63829598 -60246574 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1071 731 152 8 0 chr9 63830514 63830632 -60245540 - B1_Mur4 SINE Alu -19 131 13 7 1071 756 242 19 5 chr9 63830625 63830811 -60245361 - ID_B1 SINE B4 -102 190 1 7 1071 480 226 157 7 chr9 63830834 63830981 -60245191 - B3 SINE B2 -1 215 47 7 1071 207 250 0 0 chr9 63831534 63831590 -60244582 - MIR SINE MIR -87 121 66 7 1072 184 404 0 17 chr9 63832509 63832625 -60243547 + L2c LINE L2 3254 3367 -20 7 1072 324 192 90 0 chr9 63832863 63832941 -60243231 + L1M5 LINE L1 5618 5702 -422 7 1072 424 276 29 0 chr9 63833449 63833554 -60242618 + ID_B1 SINE B4 107 214 -10 7 1072 249 139 0 0 chr9 63833555 63833598 -60242574 + (CATA)n Simple_repeat Simple_repeat 2 44 0 7 1072 572 291 45 15 chr9 63833613 63833815 -60242357 + B3 SINE B2 9 216 0 7 1072 551 283 97 63 chr9 63833817 63833856 -60242316 + B4A SINE B4 2 43 -249 7 1072 899 107 45 8 chr9 63833856 63833988 -60242184 + B1_Mur4 SINE Alu 1 137 -13 7 1072 551 283 97 63 chr9 63833988 63834216 -60241956 + B4A SINE B4 44 278 -14 7 1072 291 338 0 0 chr9 63834238 63834318 -60241854 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1072 797 97 36 22 chr9 63835235 63835372 -60240800 + B1_Mus2 SINE Alu 9 147 0 7 1072 399 89 0 0 chr9 63835562 63835618 -60240554 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1072 829 154 14 42 chr9 63835628 63835770 -60240402 - B1_Mur3 SINE Alu -9 140 3 7 1072 339 25 0 0 chr9 63836170 63836210 -60239962 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1072 445 246 0 22 chr9 63836210 63836393 -60239779 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1072 189 224 0 0 chr9 63836438 63836496 -60239676 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1072 309 234 65 0 chr9 63836520 63836597 -60239575 - ID4 SINE ID -1 82 1 7 1072 262 300 131 20 chr9 63837437 63837451 -60238721 - B4A SINE B4 -46 246 173 7 1072 594 128 121 57 chr9 63837451 63837575 -60238597 - B1_Mur1 SINE Alu -1 148 17 7 1072 262 300 131 20 chr9 63837575 63837590 -60238582 - B4A SINE B4 -46 172 77 7 1072 183 42 0 0 chr9 63837616 63837640 -60238532 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 7 1072 327 290 60 22 chr9 63838307 63838441 -60237731 + MER53 DNA hAT 19 157 -36 7 1072 425 233 58 0 chr9 63838451 63838554 -60237618 + PB1D10 SINE Alu 1 109 -8 7 1072 625 281 163 62 chr9 63838575 63838833 -60237339 + B4A SINE B4 5 288 -4 7 1072 461 206 75 0 chr9 63838993 63839100 -60237072 - PB1D7 SINE Alu -1 119 5 7 1072 1120 194 30 0 chr9 63839488 63839689 -60236483 + B3 SINE B2 1 207 -9 7 1072 541 288 87 20 chr9 63839725 63839874 -60236298 + RSINE1 SINE B4 5 163 -2 7 1072 474 271 142 98 chr9 63840062 63840336 -60235836 + B4 SINE B4 1 286 -6 7 1072 297 0 0 0 chr9 63840381 63840414 -60235758 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1072 661 201 27 40 chr9 63841108 63841258 -60234914 + RSINE1 SINE B4 18 165 0 7 1072 784 302 19 0 chr9 63841386 63841598 -60234574 - ID_B1 SINE B4 -4 220 5 7 1072 770 175 22 0 chr9 63841630 63841767 -60234405 + B1_Mur4 SINE Alu 5 144 -6 7 1072 411 327 57 98 chr9 63841909 63842191 -60233981 + L1M4 LINE L1 4565 4847 -1299 7 1072 753 284 73 5 chr9 63842191 63842396 -60233776 - ID_B1 SINE B4 -5 219 1 7 1072 1314 113 16 11 chr9 63842406 63842594 -60233578 - B2_Mm2 SINE B2 -4 191 3 7 1072 411 327 57 98 chr9 63842594 63842666 -60233506 + L1M4 LINE L1 4848 4915 -1231 7 1072 585 208 0 0 chr9 63842696 63842802 -60233370 + B1_Mus1 SINE Alu 1 106 -42 7 1072 286 278 133 77 chr9 63842864 63842903 -60233269 + L1MD LINE L1 4942 4973 -1173 7 1072 965 134 257 0 chr9 63842903 63843074 -60233098 + B3 SINE B2 2 216 0 7 1072 401 274 92 42 chr9 63843074 63843376 -60232796 + L1MD LINE L1 4974 5310 -836 7 1072 843 157 43 0 chr9 63843376 63843516 -60232656 + B1_Mus2 SINE Alu 1 146 -1 7 1072 286 278 133 77 chr9 63843516 63843602 -60232570 + L1MD LINE L1 5311 5393 -753 7 1072 440 273 36 138 chr9 63843646 63843871 -60232301 - ID_B1 SINE B4 -21 203 2 7 1072 419 308 34 14 chr9 63844101 63844314 -60231858 + MIRb SINE MIR 26 246 -22 7 1072 654 262 42 119 chr9 63844551 63844863 -60231309 + B4A SINE B4 1 288 -4 7 1072 706 174 17 11 chr9 63844884 63845058 -60231114 + GA-rich Low_complexity Low_complexity 1 175 0 7 1072 396 0 0 0 chr9 63845064 63845108 -60231064 + (CAG)n Simple_repeat Simple_repeat 3 46 0 7 1072 903 207 78 5 chr9 63845109 63845313 -60230859 + ID_B1 SINE B4 6 224 0 7 1072 183 42 0 0 chr9 63845561 63845585 -60230587 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 7 1072 1111 241 32 60 chr9 63846495 63846778 -60229394 + B4 SINE B4 18 292 0 7 1072 413 19 0 18 chr9 63847074 63847129 -60229043 + (CAG)n Simple_repeat Simple_repeat 3 56 0 7 1072 429 292 80 48 chr9 63847174 63847265 -60228907 + B4A SINE B4 1 97 -195 7 1072 231 305 8 63 chr9 63847265 63847391 -60228781 + B1F SINE Alu 1 119 -30 7 1072 1125 207 23 5 chr9 63847843 63848057 -60228115 - ID_B1 SINE B4 -5 219 2 7 1072 531 297 45 25 chr9 63849012 63849212 -60226960 + RMER15 LTR ERVL 336 539 -36 7 1072 555 238 98 29 chr9 63849293 63849492 -60226680 + MIR SINE MIR 15 230 -32 7 1072 186 43 0 0 chr9 63849523 63849546 -60226626 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1072 408 40 0 0 chr9 63849546 63849595 -60226577 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1072 245 363 40 45 chr9 63849781 63849957 -60226215 + L2c LINE L2 2990 3164 -223 7 1072 199 313 45 41 chr9 63850162 63850257 -60225915 - MIRm SINE MIR -143 133 37 7 1072 23 0 0 0 chr9 63850368 63850391 -60225781 + AT_rich Low_complexity Low_complexity 1 23 0 7 1072 422 229 42 78 chr9 63850643 63850809 -60225363 + RSINE1 SINE B4 6 165 0 7 1072 290 294 43 52 chr9 63851058 63851214 -60224958 - MIR SINE MIR -106 162 8 7 1072 215 234 103 28 chr9 63852333 63852436 -60223736 + MIRb SINE MIR 32 136 -132 7 1072 804 140 59 0 chr9 63853579 63853715 -60222457 - B1_Mur4 SINE Alu -1 149 6 7 1072 258 245 91 36 chr9 63853774 63853884 -60222288 - B1_Mur1 SINE Alu 0 149 34 7 1072 240 280 70 47 chr9 63855000 63855086 -60221086 - PB1D10 SINE Alu -25 92 5 7 1072 270 176 0 0 chr9 63855128 63855179 -60220993 + (CG)n Simple_repeat Simple_repeat 1 51 0 7 1072 929 249 0 19 chr9 63855523 63855728 -60220444 - ID_B1 SINE B4 -23 201 1 7 1072 219 167 0 0 chr9 63856004 63856046 -60220126 + CT-rich Low_complexity Low_complexity 4 45 0 7 1072 741 245 154 67 chr9 63856996 63857020 -60219152 - B4 SINE B4 0 292 273 7 1072 198 0 0 0 chr9 63857020 63857042 -60219130 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1072 741 245 154 67 chr9 63857042 63857284 -60218888 - B4 SINE B4 -20 272 3 7 1072 471 99 14 0 chr9 63857519 63857599 -60218573 + B2_Mm2 SINE B2 5 85 -113 7 1072 324 280 0 86 chr9 63857961 63858078 -60218094 + PB1D10 SINE Alu 1 107 -10 7 1072 213 197 0 0 chr9 63858220 63858291 -60217881 + T-rich Low_complexity Low_complexity 1 71 0 7 1072 893 125 66 0 chr9 63858293 63858380 -60217792 - B1_Mus2 SINE Alu -2 145 50 7 1072 234 0 0 0 chr9 63858380 63858406 -60217766 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 8 1072 893 125 66 0 chr9 63858406 63858454 -60217718 - B1_Mus2 SINE Alu -98 49 2 7 1072 192 77 0 0 chr9 63859258 63859284 -60216888 + (TTAG)n Simple_repeat Simple_repeat 1 26 0 8 1072 930 210 5 16 chr9 63859307 63859491 -60216681 - B3A SINE B2 -16 182 1 8 1072 321 26 0 0 chr9 63859754 63859792 -60216380 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 8 1072 422 332 64 50 chr9 63860204 63860423 -60215749 + MIRb SINE MIR 46 267 -1 8 1072 393 324 23 34 chr9 63860465 63860641 -60215531 - MER53 DNA hAT -2 191 18 8 1072 494 340 13 0 chr9 63860730 63860883 -60215289 + RSINE1 SINE B4 2 156 -9 8 1072 437 240 183 0 chr9 63861646 63861750 -60214422 - B1_Mur3 SINE Alu -1 148 26 8 1072 653 223 50 37 chr9 63861763 63861955 -60214217 - B3 SINE B2 -9 186 2 8 1072 209 267 258 19 chr9 63862031 63862162 -60214010 - MIRc SINE MIR -84 184 25 8 1072 342 0 0 0 chr9 63862646 63862684 -60213488 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1072 480 283 31 23 chr9 63862684 63862814 -60213358 - ID_B1 SINE B4 -11 213 83 8 1072 216 0 0 0 chr9 63862842 63862866 -60213306 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1072 222 286 83 93 chr9 63863101 63863209 -60212963 - B4A SINE B4 -95 197 91 8 1072 280 221 161 11 chr9 63863123 63863210 -60212962 - B1F SINE Alu -45 104 5 8 1072 233 69 0 0 chr9 63863372 63863401 -60212771 + (GGA)n Simple_repeat Simple_repeat 3 31 0 8 1072 515 90 13 0 chr9 63863401 63863479 -60212693 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 8 1072 441 211 22 0 chr9 63863584 63863674 -60212498 + B1_Mur4 SINE Alu 59 150 0 8 1072 209 79 79 0 chr9 63863692 63863730 -60212442 + A-rich Low_complexity Low_complexity 2 42 0 8 1072 2082 226 42 1 chr9 63863748 63864213 -60211959 - L1MB7 LINE L1 -29 6155 5634 8 1072 183 42 0 0 chr9 63865086 63865110 -60211062 + (CGGGG)n Simple_repeat Simple_repeat 1 24 0 8 1072 191 36 36 0 chr9 63865820 63865848 -60210324 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 8 1072 192 380 62 0 chr9 63866298 63866411 -60209761 + L4 LINE RTE 1771 1890 -139 8 1072 360 0 0 0 chr9 63867177 63867217 -60208955 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1072 237 65 0 0 chr9 63869021 63869052 -60207120 + (CCGGG)n Simple_repeat Simple_repeat 5 35 0 8 1072 23 86 0 0 chr9 63869981 63870039 -60206133 + GC_rich Low_complexity Low_complexity 1 58 0 8 1072 27 62 0 0 chr9 63870884 63870932 -60205240 + GC_rich Low_complexity Low_complexity 1 48 0 8 1072 540 287 10 17 chr9 63871395 63871559 -60204613 + ID_B1 SINE B4 57 219 -73 8 1072 198 152 48 0 chr9 63871707 63871754 -60204418 - MIR SINE MIR -103 165 110 8 1072 232 236 66 53 chr9 63872529 63872605 -60203567 + B4A SINE B4 216 292 0 8 1072 215 383 90 28 chr9 63873453 63873598 -60202574 - MIRb SINE MIR -49 219 66 8 1072 360 329 142 8 chr9 63874150 63874404 -60201768 - L2a LINE L2 -18 3408 3121 8 1072 387 300 50 0 chr9 63874602 63874742 -60201430 - L2a LINE L2 -467 2952 2806 8 1072 204 262 244 8 chr9 63874826 63874949 -60201223 - L2a LINE L2 -599 2820 2669 8 1072 331 203 0 0 chr9 63875059 63875123 -60201049 - ID_B1 SINE B4 0 224 161 8 1072 249 261 63 74 chr9 63875066 63875161 -60201011 - PB1D9 SINE Alu -7 113 20 8 1072 882 245 20 0 chr9 63875160 63875360 -60200812 - B3 SINE B2 -9 207 4 8 1072 307 56 37 0 chr9 63875691 63875745 -60200427 + B2_Mm1t SINE B2 127 182 -11 8 1072 192 40 0 0 chr9 63875745 63875770 -60200402 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1072 629 257 151 0 chr9 63875770 63875949 -60200223 - ID_B1 SINE B4 -18 206 1 8 1072 1462 75 16 0 chr9 63876167 63876354 -60199818 + B2_Mm2 SINE B2 2 191 -4 8 1072 830 164 0 30 chr9 63876831 63876963 -60199209 - B1_Mus1 SINE Alu -19 129 2 8 1072 568 268 7 47 chr9 63877157 63877306 -60198866 - ID_B1 SINE B4 0 224 82 8 1072 443 209 43 52 chr9 63877555 63877671 -60198501 - PB1D10 SINE Alu -2 115 1 8 1072 22 0 0 0 chr9 63877695 63877717 -60198455 + AT_rich Low_complexity Low_complexity 1 22 0 8 1072 510 273 45 0 chr9 63877722 63877854 -60198318 - RSINE1 SINE B4 -15 150 13 8 1072 254 336 58 0 chr9 63878432 63878536 -60197636 - ORSL DNA Tip100 0 275 166 8 1072 374 311 94 58 chr9 63878581 63878772 -60197400 - ID_B1 SINE B4 -25 199 2 8 1072 350 247 103 0 chr9 63878772 63878869 -60197303 - ORSL DNA Tip100 -168 107 1 8 1072 713 143 219 0 chr9 63878939 63879058 -60197114 + B1_Mus1 SINE Alu 1 145 -3 8 1072 300 70 0 0 chr9 63879058 63879101 -60197071 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1072 333 0 0 0 chr9 63879457 63879494 -60196678 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1072 3953 121 39 67 chr9 63879504 63880251 -60195921 + RMER6A LTR ERVK 1 726 -30 8 1072 242 240 0 0 chr9 63880273 63880323 -60195849 - B1F SINE Alu -99 50 1 8 1072 2448 168 16 18 chr9 63880379 63880822 -60195350 - Lx9 LINE L1 -492 7152 6711 8 1072 976 263 5 0 chr9 63880822 63881020 -60195152 - B3 SINE B2 -14 202 4 8 1072 886 209 75 5 chr9 63881061 63881249 -60194923 + ID_B1 SINE B4 3 203 -21 8 1072 273 210 0 0 chr9 63881256 63881318 -60194854 + GA-rich Low_complexity Low_complexity 1 62 0 8 1072 363 239 0 32 chr9 63881632 63881727 -60194445 - PB1D10 SINE Alu -25 92 1 8 1072 1093 75 0 0 chr9 63882664 63882798 -60193374 + B1_Mus1 SINE Alu 2 135 -13 8 1072 297 0 0 0 chr9 63882818 63882851 -60193321 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 8 1072 526 292 45 0 chr9 63882927 63883081 -60193091 - B4A SINE B4 -22 270 110 8 1072 331 248 47 60 chr9 63883102 63883252 -60192920 + HAL1-2a_MD LINE L1 2363 2510 -514 8 1072 255 293 0 0 chr9 63883257 63883315 -60192857 - B4A SINE B4 -226 66 9 8 1072 721 260 55 0 chr9 63883400 63883581 -60192591 + B3 SINE B2 4 194 -22 8 1072 501 260 24 31 chr9 63883570 63883697 -60192475 - B3A SINE B2 -72 126 1 8 1072 1369 209 38 148 chr9 63883911 63884074 -60192098 + ORR1D1 LTR MaLR 1 163 -211 8 1072 576 0 0 0 chr9 63884074 63884138 -60192034 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 1072 1369 209 38 148 chr9 63884138 63884394 -60191778 + ORR1D1 LTR MaLR 164 374 0 8 1072 787 152 14 14 chr9 63884409 63884549 -60191623 + B1_Mur3 SINE Alu 5 144 -5 8 1072 21 0 0 0 chr9 63884582 63884603 -60191569 + AT_rich Low_complexity Low_complexity 1 21 0 8 1072 252 349 56 119 chr9 63884783 63884926 -60191246 + MLT1J LTR MaLR 227 360 -152 8 1072 275 286 115 20 chr9 63885105 63885307 -60190865 + MLT1A0 LTR MaLR 1 253 -112 8 1072 360 289 80 15 chr9 63885421 63885558 -60190614 + B1F SINE Alu 3 148 -1 8 1072 2070 45 0 0 chr9 63885583 63885828 -60190344 + L1Md_A LINE L1 6338 6582 0 8 1072 658 228 72 24 chr9 63885837 63886003 -60190169 - B3A SINE B2 -24 174 1 8 1072 1154 147 11 6 chr9 63886755 63886933 -60189239 - B2_Mm2 SINE B2 -16 179 1 8 1072 705 251 132 77 chr9 63886933 63887000 -60189172 + MTD LTR MaLR 46 112 -307 8 1072 351 0 0 0 chr9 63887000 63887039 -60189133 + (TTA)n Simple_repeat Simple_repeat 2 40 0 8 1072 705 251 132 77 chr9 63887039 63887136 -60189036 + MTD LTR MaLR 113 238 -181 8 1072 512 42 14 0 chr9 63887136 63887207 -60188965 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 8 1072 705 251 132 77 chr9 63887207 63887352 -60188820 + MTD LTR MaLR 239 372 -47 8 1072 727 183 13 47 chr9 63887674 63887823 -60188349 + B1_Mur3 SINE Alu 1 144 -5 8 1072 423 0 0 0 chr9 63887825 63887872 -60188300 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1072 201 294 0 0 chr9 63888176 63888227 -60187945 + GA-rich Low_complexity Low_complexity 1 51 0 8 1072 278 301 182 44 chr9 63888447 63888628 -60187544 - MLT1H LTR MaLR -326 223 18 8 1072 356 308 46 8 chr9 63888790 63888921 -60187251 - MLT1D LTR MaLR -8 497 362 8 1072 523 289 33 0 chr9 63888984 63889136 -60187036 - RSINE1 SINE B4 -6 159 3 8 1072 378 291 146 82 chr9 63889145 63889474 -60186698 - MLT1D LTR MaLR -148 357 8 8 1072 398 235 0 12 chr9 63889712 63889794 -60186378 + PB1D10 SINE Alu 1 81 -36 8 1072 383 286 40 93 chr9 63889751 63889851 -60186321 + CYRA11_Mm Unknown Y-chromosome 83 169 -448 8 1072 881 137 0 14 chr9 63889851 63889999 -60186173 - URR1A DNA MER1_type 0 226 81 8 1072 1296 222 60 30 chr9 63890026 63890360 -60185812 + MTEa LTR MaLR 36 379 0 8 1072 216 208 19 19 chr9 63891536 63891590 -60184582 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1072 532 253 115 22 chr9 63892177 63892403 -60183769 - B4A SINE B4 -43 249 3 8 1072 860 247 0 30 chr9 63892627 63892827 -60183345 + RMER30 DNA MER1_type 2 195 -7 8 1072 589 253 6 99 chr9 63893672 63893791 -60182381 - RSINE1 SINE B4 -16 149 38 8 1072 1234 41 0 33 chr9 63893791 63893804 -60182368 - B1_Mm SINE Alu 0 147 139 8 1072 207 0 0 0 chr9 63893804 63893827 -60182345 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1072 1234 41 0 33 chr9 63893827 63893965 -60182207 - B1_Mm SINE Alu -9 138 1 8 1072 589 253 6 99 chr9 63893965 63894007 -60182165 - RSINE1 SINE B4 -128 37 3 8 1072 847 227 78 9 chr9 63894310 63894528 -60181644 + B4A SINE B4 5 237 -55 8 1072 604 267 90 11 chr9 63894520 63894698 -60181474 + B3A SINE B2 7 198 0 8 1072 204 179 0 0 chr9 63894820 63894859 -60181313 + GA-rich Low_complexity Low_complexity 6 44 0 8 1072 229 288 36 36 chr9 63895392 63895475 -60180697 + MER70B LTR ERVL 490 572 -6 8 1072 808 200 51 0 chr9 63895431 63895606 -60180566 - ORR1D1 LTR MaLR -190 184 1 8 1072 500 292 35 64 chr9 63895606 63895778 -60180394 - ID_B1 SINE B4 -56 168 2 8 1072 811 271 16 0 chr9 63895814 63896006 -60180166 + B3A SINE B2 2 196 -2 8 1072 416 214 29 39 chr9 63896302 63896404 -60179768 + 5S rRNA rRNA 1 101 -20 8 1072 336 24 0 0 chr9 63896601 63896642 -60179530 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1072 201 162 0 0 chr9 63896695 63896732 -60179440 + A-rich Low_complexity Low_complexity 1 37 0 8 1072 230 278 61 91 chr9 63897181 63897197 -60178975 - B1F SINE Alu 0 149 137 9 1072 769 58 213 8 chr9 63897197 63897319 -60178853 - B1_Mus1 SINE Alu 0 148 2 9 1072 230 278 61 91 chr9 63897319 63897401 -60178771 - B1F SINE Alu -13 136 54 9 1072 242 267 116 8 chr9 63897552 63897673 -60178499 - MIRb SINE MIR -72 196 63 9 1072 216 278 186 0 chr9 63898517 63898614 -60177558 + L2 LINE L2 2956 3070 -349 9 1072 386 298 5 140 chr9 63898757 63898869 -60177303 + MLT1B LTR MaLR 1 98 -292 9 1072 980 264 28 35 chr9 63898869 63899155 -60177017 + B4 SINE B4 1 284 -8 9 1072 386 298 5 140 chr9 63899155 63899169 -60177003 + MLT1B LTR MaLR 99 100 -290 9 1072 207 88 0 0 chr9 63899169 63899203 -60176969 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1072 386 298 5 140 chr9 63899203 63899282 -60176890 + MLT1B LTR MaLR 101 179 -211 9 1072 283 305 95 41 chr9 63899350 63899497 -60176675 + MLT1B LTR MaLR 208 362 -12 9 1072 1680 32 0 0 chr9 63899815 63900005 -60176167 - B2_Mm1a SINE B2 -3 190 1 9 1072 347 297 174 11 chr9 63900010 63900194 -60175978 - L1MC LINE L1 -2693 3453 3240 9 1072 187 79 0 50 chr9 63900209 63900249 -60175923 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1072 376 289 62 67 chr9 63900257 63900479 -60175693 - B4 SINE B4 -4 288 75 9 1072 257 281 0 15 chr9 63900487 63900552 -60175620 - RSINE1 SINE B4 -88 77 14 9 1072 237 207 69 0 chr9 63900592 63900650 -60175522 - PB1D10 SINE Alu -39 78 17 9 1072 704 236 94 30 chr9 63900655 63900856 -60175316 + B3 SINE B2 3 216 0 9 1072 489 270 6 68 chr9 63900915 63901078 -60175094 - RSINE1 SINE B4 -12 153 1 9 1072 480 238 107 8 chr9 63901665 63901796 -60174376 + RSINE1 SINE B4 11 154 -11 9 1072 289 242 0 0 chr9 63902049 63902111 -60174061 - MIRc SINE MIR -119 149 88 9 1072 589 262 67 0 chr9 63902481 63902630 -60173542 - ID_B1 SINE B4 -3 221 63 9 1072 243 208 0 0 chr9 63903569 63903617 -60172555 + L2b LINE L2 3122 3169 -206 9 1072 458 242 0 29 chr9 63904883 63904985 -60171187 + PB1D10 SINE Alu 19 117 0 9 1072 312 312 10 10 chr9 63905316 63905413 -60170759 + MIRc SINE MIR 61 157 -111 9 1072 445 297 26 40 chr9 63905416 63905428 -60170744 + ID_B1 SINE B4 74 218 -2 9 1072 724 167 37 22 chr9 63905428 63905563 -60170609 + B1_Mus1 SINE Alu 6 142 -6 9 1072 639 211 116 49 chr9 63905584 63905748 -60170424 + B3 SINE B2 1 175 -41 9 1072 823 267 46 51 chr9 63906563 63906780 -60169392 + ID_B1 SINE B4 1 216 -8 9 1072 280 284 154 8 chr9 63907497 63907614 -60168558 - ID_B1 SINE B4 -3 221 88 9 1072 659 190 0 17 chr9 63910302 63910420 -60165752 - PB1D9 SINE Alu -3 117 2 9 1072 427 184 13 13 chr9 63910468 63910545 -60165627 - ID4_ SINE ID -4 79 3 9 1072 369 0 0 0 chr9 63910550 63910591 -60165581 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1072 1108 219 40 40 chr9 63910591 63910867 -60165305 - B4A SINE B4 -16 276 1 9 1072 362 217 12 12 chr9 63910986 63911070 -60165102 + B4A SINE B4 2 85 -207 9 1072 1167 76 0 0 chr9 63911079 63911224 -60164948 + B1_Mm SINE Alu 2 146 -1 9 1072 289 115 0 60 chr9 63911441 63911524 -60164648 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1072 1273 80 22 33 chr9 63911639 63911821 -60164351 + B2_Mm2 SINE B2 2 181 -14 9 1072 610 185 0 15 chr9 63911847 63911945 -60164227 + polypurine Low_complexity Low_complexity 3 100 0 9 1072 1295 39 11 11 chr9 63911945 63912125 -60164047 + (GAA)n Simple_repeat Simple_repeat 1 180 0 9 1072 610 185 0 15 chr9 63912125 63912163 -60164009 + polypurine Low_complexity Low_complexity 101 137 0 9 1072 266 242 30 15 chr9 63912192 63912259 -60163913 + B2_Mm2 SINE B2 2 69 -126 9 1072 783 189 0 0 chr9 63912760 63913036 -60163136 + (TCCA)n Simple_repeat Simple_repeat 1 276 0 9 1072 698 259 174 40 chr9 63914042 63914295 -60161877 - B4A SINE B4 -4 288 2 9 1072 818 269 107 8 chr9 63915314 63915558 -60160614 + B4 SINE B4 9 276 -16 9 1072 364 77 51 13 chr9 63916751 63916830 -60159342 + (TGGGGG)n Simple_repeat Simple_repeat 3 84 0 9 1072 228 135 0 0 chr9 63916832 63916869 -60159303 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1072 645 256 18 24 chr9 63917413 63917577 -60158595 + RSINE1 SINE B4 3 165 0 9 1072 1172 62 14 0 chr9 63917677 63917821 -60158351 + B1_Mm SINE Alu 2 147 0 9 1072 558 228 117 45 chr9 63918007 63918081 -60158091 - ID_B1 SINE B4 -32 192 122 9 1072 1258 41 0 0 chr9 63918081 63918228 -60157944 - B1_Mm SINE Alu 0 147 1 9 1072 558 228 117 45 chr9 63918228 63918332 -60157840 - ID_B1 SINE B4 -103 121 1 9 1072 183 318 72 43 chr9 63918346 63918484 -60157688 - MIR SINE MIR -119 143 2 9 1072 838 222 43 22 chr9 63919103 63919287 -60156885 + B3 SINE B2 9 196 -20 9 1072 183 42 0 0 chr9 63919290 63919314 -60156858 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 9 1072 780 236 141 0 chr9 63919999 63920190 -60155982 + ID_B1 SINE B4 2 219 -5 9 1072 772 305 42 28 chr9 63920200 63920487 -60155685 + B4A SINE B4 1 291 -1 9 1072 319 281 15 11 chr9 63920508 63920633 -60155539 - MIRb SINE MIR -74 194 63 9 1072 1223 113 17 0 chr9 63920633 63920810 -60155362 + B2_Mm1t SINE B2 1 180 -13 9 1072 230 105 0 0 chr9 63920849 63920887 -60155285 + B2_Mm2 SINE B2 64 101 -94 9 1072 558 146 0 0 chr9 63921276 63921386 -60154786 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 9 1072 276 211 0 73 chr9 63921388 63921407 -60154765 - B2_Mm2 SINE B2 -19 176 159 9 1072 207 0 0 0 chr9 63921407 63921430 -60154742 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 9 1072 334 153 0 48 chr9 63921430 63921492 -60154680 - B2_Mm1a SINE B2 -33 160 102 9 1072 1189 42 14 14 chr9 63921515 63921661 -60154511 - B1_Mm SINE Alu -1 146 1 9 1072 752 109 0 0 chr9 63921662 63921772 -60154400 - B2_Mm2 SINE B2 -83 112 3 9 1072 210 403 0 0 chr9 63922240 63922312 -60153860 - ID4_ SINE ID -11 72 1 9 1072 882 125 0 29 chr9 63922399 63922539 -60153633 - URR1B DNA MER1_type -89 136 1 9 1072 702 203 0 0 chr9 63923707 63923934 -60152238 + (CA)n Simple_repeat Simple_repeat 1 227 0 9 1072 397 176 88 0 chr9 63924050 63924152 -60152020 - PB1D10 SINE Alu -6 111 1 9 1072 585 211 123 13 chr9 63924152 63924220 -60151952 - ID SINE ID -139 85 1 9 1072 434 136 12 0 chr9 63924225 63924306 -60151866 + (TTTTC)n Simple_repeat Simple_repeat 2 83 0 9 1072 243 252 26 88 chr9 63924630 63924667 -60151505 - Zaphod DNA Tip100 -5 4026 3990 9 1072 1051 101 7 13 chr9 63924667 63924818 -60151354 - B1_Mur4 SINE Alu 0 150 1 9 1072 243 252 26 88 chr9 63924818 63924893 -60151279 - Zaphod DNA Tip100 -42 3989 3922 9 1072 214 304 0 0 chr9 63925254 63925310 -60150862 - MIR SINE MIR -98 164 109 9 1072 184 273 0 18 chr9 63925577 63925633 -60150539 - MIRc SINE MIR -117 151 97 9 1072 703 255 99 5 chr9 63925839 63926040 -60150132 - ID_B1 SINE B4 -4 220 1 9 1072 288 0 0 0 chr9 63926644 63926676 -60149496 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1072 205 287 70 53 chr9 63927251 63927365 -60148807 - MIR SINE MIR -72 136 21 9 1072 1231 69 12 0 chr9 63927613 63927628 -60148544 - B2_Mm2 SINE B2 -20 175 159 9 1072 229 26 26 26 chr9 63927628 63927667 -60148505 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 9 1072 1231 69 12 0 chr9 63927667 63927824 -60148348 - B2_Mm2 SINE B2 -37 158 2 9 1072 521 312 0 30 chr9 63927920 63928085 -60148087 + MIR SINE MIR 60 219 -43 9 1072 315 341 11 22 chr9 63928685 63928765 -60147407 + polypurine Low_complexity Low_complexity 1 79 0 9 1072 222 37 0 0 chr9 63928765 63928792 -60147380 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 9 1072 315 341 11 22 chr9 63928792 63928891 -60147281 + polypurine Low_complexity Low_complexity 80 177 0 9 1072 375 290 110 92 chr9 63929528 63929756 -60146416 - B4 SINE B4 -6 286 55 9 1072 299 283 21 11 chr9 63929832 63929925 -60146247 - B1_Mm SINE Alu -51 96 3 9 1072 515 310 58 6 chr9 63930039 63930195 -60145977 + RSINE1 SINE B4 2 165 0 9 1072 210 71 0 0 chr9 63930197 63930225 -60145947 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1072 1385 84 21 21 chr9 63930274 63930468 -60145704 - B2_Mm2 SINE B2 0 195 2 9 1072 560 225 58 7 chr9 63930471 63930610 -60145562 - B1_Mus2 SINE Alu 0 147 2 9 1072 630 232 14 0 chr9 63930617 63930755 -60145417 - B1_Mur2 SINE Alu -1 148 9 9 1072 21 36 0 0 chr9 63930760 63930788 -60145384 + AT_rich Low_complexity Low_complexity 1 28 0 9 1072 222 416 0 0 chr9 63930803 63930964 -60145208 + (TG)n Simple_repeat Simple_repeat 1 161 0 9 1072 519 280 38 101 chr9 63930987 63931225 -60144947 - B4A SINE B4 -69 223 1 9 1072 677 209 110 28 chr9 63931259 63931441 -60144731 - B3A SINE B2 -1 197 1 9 1072 380 336 114 9 chr9 63931501 63931711 -60144461 - MER2 DNA MER2_type -23 322 91 9 1072 281 302 23 0 chr9 63932073 63932159 -60144013 - L1M5 LINE L1 -457 5667 5580 9 1072 1127 93 0 0 chr9 63933463 63933624 -60142548 - B2_Mm2 SINE B2 -33 162 2 9 1072 315 141 0 0 chr9 63933626 63933690 -60142482 + (T)n Simple_repeat Simple_repeat 1 64 0 9 1072 192 40 0 0 chr9 63933691 63933716 -60142456 + (TTGG)n Simple_repeat Simple_repeat 4 28 0 9 1072 607 171 106 23 chr9 63934637 63934769 -60141403 - B1_Mur4 SINE Alu 0 150 8 9 1072 748 183 42 7 chr9 63935712 63935855 -60140317 - B1_Mur3 SINE Alu 0 149 2 9 1072 211 282 95 40 chr9 63935968 63936042 -60140130 + MIRm SINE MIR 82 159 -117 9 1072 733 249 93 0 chr9 63936271 63936461 -60139711 + ID_B1 SINE B4 1 209 -15 9 1072 609 52 0 0 chr9 63936461 63936538 -60139634 + (CA)n Simple_repeat Simple_repeat 1 77 0 9 1072 733 249 93 0 chr9 63936538 63936552 -60139620 + ID_B1 SINE B4 210 223 -1 9 1072 425 213 64 9 chr9 63938129 63938238 -60137934 + PB1D10 SINE Alu 3 117 0 1 1072 587 284 34 0 chr9 63938304 63938452 -60137720 + RSINE1 SINE B4 3 155 -10 1 1072 30 45 0 0 chr9 63938472 63938516 -60137656 + AT_rich Low_complexity Low_complexity 1 44 0 1 1072 734 132 0 0 chr9 63938534 63938648 -60137524 + B1_Mus1 SINE Alu 35 148 0 1 1072 274 322 6 33 chr9 63938829 63939012 -60137160 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1072 1358 210 180 25 chr9 63939109 63939470 -60136702 - MTD LTR MaLR -2 417 1 1 1072 301 263 407 54 chr9 63939470 63939687 -60136485 - MTD LTR MaLR -124 295 2 1 1072 727 143 66 22 chr9 63939871 63940007 -60136165 - B1_Mus1 SINE Alu -5 143 2 1 1072 429 265 10 0 chr9 63940385 63940487 -60135685 + PB1D9 SINE Alu 18 120 0 1 1072 415 247 145 31 chr9 63941443 63941602 -60134570 - RMER15 LTR ERVL -58 517 341 1 1072 218 227 73 29 chr9 63941967 63942035 -60134137 + L2b LINE L2 3305 3375 0 1 1072 188 273 0 0 chr9 63943354 63943398 -60132774 + MIR SINE MIR 108 151 -111 1 1072 223 248 93 76 chr9 63943837 63943955 -60132217 - MIR SINE MIR -71 137 18 1 1072 939 112 0 22 chr9 63944297 63944434 -60131738 - B1_Mur2 SINE Alu 0 149 16 1 1072 1204 172 0 50 chr9 63944570 63944662 -60131510 - URR1B DNA MER1_type 0 225 134 1 1072 1468 69 11 0 chr9 63944662 63944851 -60131321 - B2_Mm1a SINE B2 -1 192 2 1 1072 1204 172 0 50 chr9 63944851 63944978 -60131194 - URR1B DNA MER1_type -92 133 17 1 1072 228 258 159 72 chr9 63945072 63945095 -60131077 + YREP_Mm Unknown Unknown 142 291 -1521 1 1072 559 235 26 0 chr9 63945095 63945210 -60130962 - ID_B1 SINE B4 0 224 107 1 1072 1196 68 0 0 chr9 63945351 63945498 -60130674 + B1_Mus2 SINE Alu 1 147 0 1 1072 227 29 57 0 chr9 63945498 63945533 -60130639 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 1 1072 342 264 231 6 chr9 63945589 63945618 -60130554 - B3A SINE B2 -2 196 167 1 1072 249 33 0 0 chr9 63945618 63945648 -60130524 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1072 342 264 231 6 chr9 63945648 63945778 -60130394 - B3A SINE B2 -32 166 1 1 1072 1559 169 108 103 chr9 63946351 63946685 -60129487 - MTD LTR MaLR 0 419 66 1 1072 855 157 15 0 chr9 63946685 63946819 -60129353 - B1_Mur2 SINE Alu -13 136 1 1 1072 1559 169 108 103 chr9 63946819 63946900 -60129272 - MTD LTR MaLR -354 65 2 1 1072 682 301 0 7 chr9 63946909 63947063 -60129109 + RSINE1 SINE B4 12 164 -1 1 1072 557 225 0 26 chr9 63947100 63947214 -60128958 + B3 SINE B2 106 216 0 1 1072 355 273 50 20 chr9 63947662 63947763 -60128409 - L2a LINE L2 -13 3413 3310 1 1072 465 256 40 0 chr9 63948583 63948708 -60127464 + B1_Mur1 SINE Alu 1 130 -19 1 1072 285 29 0 0 chr9 63949014 63949048 -60127124 + (CACG)n Simple_repeat Simple_repeat 1 34 0 1 1072 303 28 0 0 chr9 63949169 63949205 -60126967 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1072 828 153 219 6 chr9 63949237 63949415 -60126757 - B3 SINE B2 0 216 1 1 1072 222 62 0 0 chr9 63950024 63950056 -60126116 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1072 698 97 0 0 chr9 63950124 63950217 -60125955 + B1_Mus1 SINE Alu 1 93 -55 1 1072 546 228 0 19 chr9 63950219 63950322 -60125850 + RSINE1 SINE B4 29 129 -36 1 1072 216 0 0 0 chr9 63950329 63950353 -60125819 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1072 1087 199 82 0 chr9 63951212 63951408 -60124764 - ID_B1 SINE B4 -12 212 1 1 1072 360 43 0 0 chr9 63951420 63951466 -60124706 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1072 1292 82 12 0 chr9 63951470 63951640 -60124532 - B2_Mm2 SINE B2 -23 172 1 1 1072 1593 47 0 25 chr9 63951808 63952006 -60124166 + B2_Mm1t SINE B2 1 193 0 1 1072 189 0 0 0 chr9 63952006 63952027 -60124145 + (GAAA)n Simple_repeat Simple_repeat 1 21 0 1 1072 841 263 14 19 chr9 63952761 63952974 -60123198 + ID_B1 SINE B4 8 219 -5 1 1072 641 226 6 0 chr9 63953834 63953921 -60122251 + polypurine Low_complexity Low_complexity 2 88 0 1 1072 1032 131 206 0 chr9 63953921 63954096 -60122076 + B3 SINE B2 2 212 -4 1 1072 641 226 6 0 chr9 63954096 63954151 -60122021 + polypurine Low_complexity Low_complexity 89 143 0 1 1072 1037 226 32 0 chr9 63954151 63954368 -60121804 + ID_B1 SINE B4 1 224 0 1 1072 641 226 6 0 chr9 63954368 63954401 -60121771 + polypurine Low_complexity Low_complexity 144 177 0 1 1072 315 0 0 0 chr9 63954470 63954505 -60121667 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1072 721 229 82 5 chr9 63954607 63954791 -60121381 + B3A SINE B2 1 198 0 1 1072 249 122 339 36 chr9 63954851 63954960 -60121212 - B2_Mm2 SINE B2 -7 188 47 1 1072 974 105 56 0 chr9 63955007 63955150 -60121022 - B2_Mm1t SINE B2 -14 179 29 1 1072 1757 87 52 15 chr9 63955155 63955424 -60120748 + RLTR44B LTR ERVK 171 449 0 1 1072 668 116 15 117 chr9 63955424 63955544 -60120628 + B2_Mm1t SINE B2 87 192 -1 1 1072 462 37 0 0 chr9 63955540 63955594 -60120578 + ORR1A3 LTR MaLR 272 325 -1 1 1072 258 149 44 15 chr9 63955617 63955685 -60120487 + CT-rich Low_complexity Low_complexity 4 73 0 1 1072 844 127 49 14 chr9 63955687 63955831 -60120341 - B1_Mur3 SINE Alu 0 149 1 1 1072 459 245 0 20 chr9 63955914 63956014 -60120158 - PB1D10 SINE Alu -2 115 18 1 1072 925 138 28 0 chr9 63956051 63956196 -60119976 - B1_Mur4 SINE Alu 0 150 2 1 1072 458 33 17 0 chr9 63956238 63956298 -60119874 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1072 219 212 51 133 chr9 63956363 63956461 -60119711 - B4A SINE B4 -149 143 54 1 1072 815 199 151 0 chr9 63956535 63956721 -60119451 - B3 SINE B2 0 216 3 1 1072 221 83 0 27 chr9 63957481 63957518 -60118654 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 1 1072 1256 48 0 0 chr9 63957541 63957688 -60118484 - B1_Mm SINE Alu 0 147 1 1 1072 1185 68 0 20 chr9 63957848 63957998 -60118174 + B1_Mm SINE Alu 1 147 0 1 1072 363 96 0 0 chr9 63958377 63958429 -60117743 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1072 189 107 0 0 chr9 63958429 63958456 -60117716 + (CG)n Simple_repeat Simple_repeat 2 29 0 1 1072 1101 108 0 0 chr9 63958684 63958832 -60117340 + B1_Mus1 SINE Alu 1 148 0 1 1072 641 322 27 22 chr9 63958845 63959029 -60117143 + B3A SINE B2 1 185 -13 1 1072 330 26 0 0 chr9 63959070 63959109 -60117063 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1072 243 0 0 0 chr9 63959109 63959135 -60117037 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1072 872 216 85 41 chr9 63959261 63959507 -60116665 - B4 SINE B4 0 292 36 1 1072 532 238 20 0 chr9 63959530 63959631 -60116541 - PB1D10 SINE Alu 0 117 15 1 1072 230 167 0 0 chr9 63959777 63959819 -60116353 + PB1D10 SINE Alu 69 110 -7 1 1072 860 240 14 48 chr9 63959832 63960042 -60116130 + B3 SINE B2 9 211 -5 1 1072 753 160 84 0 chr9 63960062 63960193 -60115979 + B1_Mur4 SINE Alu 1 142 -8 1 1072 495 0 0 0 chr9 63960193 63960248 -60115924 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 1072 789 124 30 23 chr9 63960254 63960386 -60115786 - B1_Mur4 SINE Alu -9 141 9 1 1072 348 192 36 116 chr9 63960293 63960405 -60115767 - MT2B LTR ERVL -344 257 155 1 1072 529 291 66 7 chr9 63961262 63961283 -60114889 - RSINE1 SINE B4 -2 163 143 1 1072 180 77 0 0 chr9 63961283 63961309 -60114863 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1072 529 291 66 7 chr9 63961309 63961439 -60114733 - RSINE1 SINE B4 -23 142 3 1 1072 530 222 117 53 chr9 63961600 63961771 -60114401 + B3A SINE B2 1 182 -16 1 1072 1076 99 86 17 chr9 63961790 63961964 -60114208 - B2_Mm2 SINE B2 -7 188 3 1 1072 354 23 0 0 chr9 63962519 63962562 -60113610 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1073 867 193 199 0 chr9 63963161 63963337 -60112835 + B3 SINE B2 2 212 -4 1 1073 1150 82 0 0 chr9 63963342 63963488 -60112684 + B1_Mus2 SINE Alu 2 147 0 1 1073 222 37 0 0 chr9 63963488 63963515 -60112657 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1 1073 516 79 0 26 chr9 63963544 63963622 -60112550 + L1_Mus2 LINE L1 6490 6565 -1 1 1073 462 263 66 33 chr9 63963780 63963962 -60112210 - MTEa LTR MaLR -122 257 6 1 1073 1224 29 0 0 chr9 63963988 63964127 -60112045 - B1_Mus1 SINE Alu -6 142 4 1 1073 357 289 0 0 chr9 63965887 63965963 -60110209 - ID4 SINE ID -6 77 2 1 1073 1064 116 69 0 chr9 63966020 63966193 -60109979 + B2_Mm2 SINE B2 2 186 -9 1 1073 536 253 45 67 chr9 63966186 63966364 -60109808 + B3A SINE B2 25 198 0 1 1073 315 0 0 0 chr9 63966957 63966992 -60109180 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1073 431 285 133 26 chr9 63967763 63967996 -60108176 - MLT1A1 LTR MaLR 0 408 102 1 1073 356 187 13 102 chr9 63968030 63968050 -60108122 + B4A SINE B4 65 69 -155 1 1073 215 254 0 174 chr9 63968050 63968136 -60108036 + B1F2 SINE Alu 1 71 -78 1 1073 1203 49 0 0 chr9 63968181 63968323 -60107849 + B1_Mus1 SINE Alu 2 143 -5 1 1073 238 290 14 14 chr9 63968493 63968563 -60107609 - B4 SINE B4 -209 83 14 1 1073 377 167 0 0 chr9 63968505 63968565 -60107607 - BC1_Mm scRNA scRNA -81 71 12 1 1073 225 233 0 0 chr9 63969240 63969283 -60106889 - ID_B1 SINE B4 -39 185 143 1 1073 752 180 57 7 chr9 63969295 63969435 -60106737 - B1_Mm SINE Alu 0 147 1 1 1073 398 236 0 109 chr9 63969332 63969451 -60106721 - MT2B LTR ERVL -344 257 152 1 1073 363 230 0 5 chr9 63969435 63969516 -60106656 - ID_B1 SINE B4 -69 155 82 1 1073 285 98 0 0 chr9 63969627 63969668 -60106504 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1073 1041 71 50 0 chr9 63969668 63969808 -60106364 - B1_Mus2 SINE Alu 0 147 1 1 1073 301 319 141 3 chr9 63970435 63970740 -60105432 - L2 LINE L2 -2667 752 406 1 1073 1115 48 7 33 chr9 63970928 63971079 -60105093 + B1_Mus1 SINE Alu 2 148 0 1 1073 1399 63 31 36 chr9 63971105 63971301 -60104871 - B2_Mm2 SINE B2 0 195 1 1 1073 999 198 15 5 chr9 63971351 63971549 -60104623 - B3 SINE B2 -16 200 1 1 1073 3386 105 28 2 chr9 63971637 63972144 -60104028 + RLTR28 LTR ERVL 1 520 -4 1 1073 431 263 0 10 chr9 63972235 63972331 -60103841 + B4 SINE B4 1 95 -197 1 1073 1087 150 103 10 chr9 63972354 63972549 -60103623 - ORR1C2 LTR MaLR 0 384 172 1 1073 346 347 7 14 chr9 63972552 63972656 -60103516 + polypurine Low_complexity Low_complexity 1 104 0 1 1073 321 26 0 0 chr9 63972656 63972694 -60103478 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1073 346 347 7 14 chr9 63972694 63972735 -60103437 + polypurine Low_complexity Low_complexity 105 145 0 1 1073 752 148 125 31 chr9 63972735 63972895 -60103277 - ORR1C2 LTR MaLR -197 187 13 1 1073 823 29 0 29 chr9 63972893 63972998 -60103174 - B1_Mm SINE Alu 0 147 46 1 1073 1839 150 11 14 chr9 63973013 63973358 -60102814 - MTC LTR MaLR -2 419 2 1 1073 633 253 205 6 chr9 63973359 63973530 -60102642 + B4 SINE B4 88 292 0 1 1073 186 43 0 0 chr9 63973530 63973553 -60102619 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1073 301 295 76 15 chr9 63973729 63973860 -60102312 + ID_B1 SINE B4 86 224 0 1 1073 247 319 14 14 chr9 63974018 63974088 -60102084 + ID SINE ID 2 71 -153 1 1073 425 275 92 28 chr9 63974297 63974439 -60101733 + RSINE1 SINE B4 10 160 -5 1 1073 857 277 3 105 chr9 63974908 63975119 -60101053 - B4 SINE B4 -1 291 81 1 1073 297 0 0 0 chr9 63975119 63975152 -60101020 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1073 857 277 3 105 chr9 63975152 63975263 -60100909 - B4 SINE B4 -212 80 2 1 1073 1424 89 11 0 chr9 63975298 63975488 -60100684 + B2_Mm1t SINE B2 1 192 -1 1 1073 348 156 94 0 chr9 63975500 63975564 -60100608 - B4 SINE B4 -221 71 2 1 1073 210 132 57 0 chr9 63975829 63975882 -60100290 + G-rich Low_complexity Low_complexity 3 58 0 1 1073 450 214 216 18 chr9 63975897 63976065 -60100107 + L1_Rod LINE L1 5334 5563 -317 1 1073 583 179 0 67 chr9 63976096 63976216 -60099956 + RSINE1 SINE B4 4 115 -50 1 1073 1200 54 0 0 chr9 63976348 63976495 -60099677 + B1_Mm SINE Alu 1 147 0 1 1073 681 82 27 0 chr9 63976558 63976668 -60099504 + (TTTC)n Simple_repeat Simple_repeat 2 114 0 1 1073 807 152 8 8 chr9 63976668 63976801 -60099371 - B1_Mur4 SINE Alu 0 150 18 1 1073 1279 34 0 0 chr9 63976807 63976954 -60099218 + B1_Mm SINE Alu 1 147 0 1 1073 234 0 0 0 chr9 63976954 63976980 -60099192 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1073 976 144 0 18 chr9 63977380 63977543 -60098629 - B2_Mm2 SINE B2 -34 161 2 1 1073 951 241 34 15 chr9 63977775 63977981 -60098191 - B3 SINE B2 -6 210 1 1 1073 1661 31 0 0 chr9 63978179 63978370 -60097802 - B2_Mm1a SINE B2 -1 192 2 1 1073 244 280 12 62 chr9 63978614 63978694 -60097478 - ID4 SINE ID -3 80 5 1 1073 990 183 11 22 chr9 63978738 63978922 -60097250 + B3 SINE B2 1 182 -34 1 1073 657 167 0 18 chr9 63978930 63979040 -60097132 - B1_Mur4 SINE Alu -42 108 1 1 1073 844 228 65 15 chr9 63979064 63979264 -60096908 - B3 SINE B2 -3 213 4 1 1073 368 339 0 38 chr9 63979715 63979847 -60096325 + ID_B1 SINE B4 78 204 -20 1 1073 458 202 316 30 chr9 63979921 63980089 -60096083 - B3 SINE B2 0 216 1 1 1073 306 342 90 39 chr9 63980116 63980350 -60095822 - Lx8 LINE L1 -16 7457 7212 1 1073 795 179 8 0 chr9 63981747 63981881 -60094291 - B1_Mus1 SINE Alu -13 135 1 1 1073 325 211 52 21 chr9 63981939 63982036 -60094136 + B3A SINE B2 90 189 -9 1 1073 1186 68 0 0 chr9 63982109 63982256 -60093916 - B1_Mus2 SINE Alu 0 147 1 1 1073 263 229 27 41 chr9 63982394 63982467 -60093705 + ID_B1 SINE B4 152 223 -1 1 1073 21 36 0 0 chr9 63982824 63982852 -60093320 + AT_rich Low_complexity Low_complexity 1 28 0 1 1073 1168 61 0 13 chr9 63982955 63983105 -60093067 - B1_Mus1 SINE Alu 0 148 1 1 1073 660 233 19 26 chr9 63983299 63983453 -60092719 - RSINE1 SINE B4 -10 155 3 1 1073 1004 198 33 19 chr9 63983460 63983671 -60092501 - B3 SINE B2 0 216 3 1 1073 438 282 68 0 chr9 63983681 63983798 -60092374 - B1F SINE Alu -7 142 18 1 1073 192 352 65 11 chr9 63983807 63983899 -60092273 - L2a LINE L2 -9 3417 3321 1 1073 712 196 243 0 chr9 63983921 63984094 -60092078 - B3 SINE B2 -1 215 1 1 1073 245 163 20 0 chr9 63984105 63984154 -60092018 - B1_Mus2 SINE Alu -7 140 91 1 1073 1203 54 0 13 chr9 63984168 63984317 -60091855 + B1_Mus1 SINE Alu 2 148 0 1 1073 180 0 0 0 chr9 63984317 63984337 -60091835 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1073 1098 105 0 0 chr9 63984461 63984604 -60091568 - B1_Mus1 SINE Alu -5 143 1 1 1073 609 146 205 31 chr9 63985096 63985223 -60090949 - B1_Mur3 SINE Alu 0 149 1 1 1073 724 145 133 30 chr9 63986285 63986420 -60089752 + B1_Mur2 SINE Alu 1 149 0 1 1073 1220 48 7 0 chr9 63986456 63986602 -60089570 - B1_Mm SINE Alu 0 147 1 1 1073 186 43 0 0 chr9 63986722 63986745 -60089427 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1073 352 328 65 71 chr9 63986855 63987177 -60088995 + RLTR46 LTR ERVK 1 320 0 1 1073 729 229 14 0 chr9 63987194 63987338 -60088834 - B1_Mus1 SINE Alu 0 148 3 1 1073 973 167 0 0 chr9 63988190 63988334 -60087838 - B1_Mur3 SINE Alu -3 146 3 1 1073 1649 37 0 0 chr9 63988397 63988588 -60087584 + B2_Mm1a SINE B2 2 192 -1 1 1073 912 117 167 0 chr9 63988818 63988980 -60087192 - B2_Mm1t SINE B2 -3 190 2 1 1073 555 254 38 15 chr9 63989121 63989253 -60086919 - ID_B1 SINE B4 -11 213 79 1 1073 245 226 0 131 chr9 63989299 63989360 -60086812 - B1F SINE Alu -21 128 76 1 1073 237 232 107 0 chr9 63989416 63989472 -60086700 - ID4 SINE ID -8 75 14 1 1073 26 30 0 0 chr9 63989613 63989646 -60086526 + AT_rich Low_complexity Low_complexity 1 33 0 1 1073 206 128 26 0 chr9 63989651 63989690 -60086482 + CT-rich Low_complexity Low_complexity 1 40 0 1 1073 324 0 0 0 chr9 63989690 63989726 -60086446 + (TATG)n Simple_repeat Simple_repeat 4 39 0 1 1073 758 85 152 8 chr9 63989733 63989851 -60086321 - B2_Mm2 SINE B2 -59 136 2 1 1073 585 188 45 0 chr9 63989957 63990069 -60086103 - B1_Mur3 SINE Alu 0 149 33 1 1073 21 57 0 0 chr9 63990164 63990199 -60085973 + AT_rich Low_complexity Low_complexity 1 35 0 1 1073 668 221 99 144 chr9 63990199 63990400 -60085772 - B3A SINE B2 0 195 4 1 1073 1149 92 35 70 chr9 63990466 63990635 -60085537 + B2_Mm2 SINE B2 1 169 -26 1 1073 1522 62 5 0 chr9 63990635 63990827 -60085345 + B2_Mm1a SINE B2 1 193 0 1 1073 1149 92 35 70 chr9 63990827 63990856 -60085316 + B2_Mm2 SINE B2 170 192 -3 1 1073 1153 243 48 24 chr9 63990962 63991295 -60084877 + MTE2a LTR MaLR 39 379 0 1 1073 441 239 225 32 chr9 63991362 63991579 -60084593 + MTE2b LTR MaLR 6 264 -115 1 1073 895 60 17 0 chr9 63991577 63991694 -60084478 - B2_Mm2 SINE B2 -73 122 4 1 1073 666 0 0 0 chr9 63992066 63992140 -60084032 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 1 1073 186 348 43 0 chr9 63992160 63992252 -60083920 - L2c LINE L2 -38 3349 3254 1 1073 770 159 220 6 chr9 63992294 63992471 -60083701 + B3 SINE B2 2 216 0 1 1073 527 228 78 8 chr9 63992511 63992639 -60083533 + B1F1 SINE Alu 1 137 -12 1 1073 28 29 0 0 chr9 63992821 63992856 -60083316 + AT_rich Low_complexity Low_complexity 1 35 0 1 1073 448 223 139 46 chr9 63992882 63992990 -60083182 + RSINE1 SINE B4 45 162 -3 1 1073 551 252 24 59 chr9 63993030 63993199 -60082973 + RSINE1 SINE B4 3 165 0 1 1073 286 274 11 87 chr9 63993353 63993445 -60082727 - B3 SINE B2 -131 85 1 1 1073 436 269 16 63 chr9 63993525 63993652 -60082520 - RSINE1 SINE B4 -1 164 44 1 1073 506 237 87 22 chr9 63993709 63993847 -60082325 - B1F2 SINE Alu 0 149 3 1 1073 244 342 27 0 chr9 63993927 63994000 -60082172 + PB1D10 SINE Alu 36 110 -7 1 1073 1339 101 21 0 chr9 63994241 63994430 -60081742 - B2_Mm2 SINE B2 -2 193 1 1 1073 491 328 23 0 chr9 63995703 63995831 -60080341 + MLT1E LTR MaLR 3 133 -520 1 1073 211 244 18 60 chr9 63995881 63996047 -60080125 + (TTATA)n Simple_repeat Simple_repeat 5 163 0 1 1073 315 0 0 0 chr9 63996051 63996086 -60080086 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1073 694 171 35 35 chr9 63996238 63996383 -60079789 + B1_Mur2 SINE Alu 4 148 -1 1 1073 1089 82 7 0 chr9 63996391 63996537 -60079635 + B1_Mus1 SINE Alu 2 148 0 1 1073 235 202 136 45 chr9 63996563 63996651 -60079521 + MLT1E LTR MaLR 268 363 -291 1 1073 1249 48 0 0 chr9 63996775 63996922 -60079250 + B1_Mus2 SINE Alu 1 147 0 1 1073 256 98 0 47 chr9 63996922 63996986 -60079186 + (CAAA)n Simple_repeat Simple_repeat 1 61 0 1 1073 198 278 96 67 chr9 63997072 63997176 -60078996 + L2a LINE L2 3258 3415 -11 1 1073 1221 43 0 0 chr9 63997452 63997593 -60078579 + B1_Mus1 SINE Alu 1 141 -7 1 1073 401 261 87 0 chr9 63997639 63997754 -60078418 + RSINE1 SINE B4 7 131 -34 1 1073 454 233 256 22 chr9 63998290 63998470 -60077702 + ID_B1 SINE B4 3 224 0 1 1073 1224 78 83 6 chr9 63998492 63998672 -60077500 + B2_Mm2 SINE B2 2 195 0 1 1073 658 204 68 16 chr9 63999725 63999916 -60076256 + B3 SINE B2 2 195 0 1 1073 282 53 0 0 chr9 63999962 64000000 -60076172 - B1_Mm SINE Alu 0 147 110 1 1073 451 208 65 101 chr9 64000002 64000105 -60076067 - B4 SINE B4 -94 198 89 1 1073 340 318 27 18 chr9 64000105 64000217 -60075955 - PB1D10 SINE Alu -2 115 3 2 1073 451 208 65 101 chr9 64000217 64000252 -60075920 - B4 SINE B4 -204 88 65 1 1073 237 273 96 38 chr9 64000388 64000573 -60075599 - MIRc SINE MIR -3 259 78 3 1073 222 91 0 0 chr9 64000966 64000999 -60075173 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 4 1073 627 251 106 15 chr9 64001106 64001304 -60074868 + B3 SINE B2 1 216 0 5 1073 957 32 0 8 chr9 64001504 64001631 -60074541 - B1_Mus2 SINE Alu -1 146 21 6 1073 1076 75 0 64 chr9 64001634 64001791 -60074381 - B1_Mus2 SINE Alu 0 147 1 7 1073 922 116 72 0 chr9 64001963 64002101 -60074071 - B1_Mus1 SINE Alu 0 148 1 8 1073 360 177 119 59 chr9 64002146 64002260 -60073912 + PB1D7 SINE Alu 3 120 0 9 1073 1191 54 0 0 chr9 64002306 64002453 -60073719 + B1_Mus2 SINE Alu 1 147 0 1 1073 917 182 0 0 chr9 64002815 64002963 -60073209 - B1_Mur3 SINE Alu -1 148 1 1 1073 589 147 45 9 chr9 64003345 64003455 -60072717 - B1_Mur1 SINE Alu -34 115 2 1 1073 212 308 95 95 chr9 64003464 64003611 -60072561 - B1_Mus2 SINE Alu 0 147 1 1 1073 955 214 88 5 chr9 64004026 64004219 -60071953 - B3 SINE B2 -6 210 2 1 1073 387 320 114 5 chr9 64004230 64004450 -60071722 - MIR SINE MIR -15 247 4 1 1073 553 250 33 0 chr9 64005114 64005234 -60070938 + RSINE1 SINE B4 3 126 -39 1 1073 30 69 0 0 chr9 64005252 64005310 -60070862 + AT_rich Low_complexity Low_complexity 1 58 0 1 1073 449 268 77 120 chr9 64005750 64005885 -60070287 + L1MB8 LINE L1 5610 5745 -433 1 1073 1469 58 21 16 chr9 64005885 64006078 -60070094 + B2_Mm2 SINE B2 2 195 0 1 1073 449 268 77 120 chr9 64006078 64006175 -60069997 + L1MB8 LINE L1 5746 5832 -346 1 1073 614 90 30 2 chr9 64007125 64007230 -60068942 - B1_Mm SINE Alu 0 147 1 2 1073 730 128 34 0 chr9 64007270 64007387 -60068785 + B2_Mm2 SINE B2 38 158 -37 2 1073 207 0 0 0 chr9 64007397 64007420 -60068752 + (C)n Simple_repeat Simple_repeat 1 23 0 2 1073 1018 15 8 0 chr9 64007420 64007551 -60068621 + B1_Mus1 SINE Alu 16 147 -1 2 1073 613 188 309 0 chr9 64007700 64007865 -60068307 - B3 SINE B2 0 216 1 2 1073 180 111 0 0 chr9 64008012 64008039 -60068133 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1073 671 98 40 47 chr9 64008041 64008191 -60067981 - RMER17B LTR ERVK -498 460 312 2 1073 900 125 27 20 chr9 64008202 64008349 -60067823 - B1_Mur2 SINE Alu -1 148 1 2 1073 225 94 0 0 chr9 64009267 64009299 -60066873 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 2 1073 747 208 35 0 chr9 64009342 64009486 -60066686 + B1_Mur4 SINE Alu 2 150 0 2 1073 317 264 54 8 chr9 64009518 64009648 -60066524 + Lx6 LINE L1 7324 7459 -1 3 1073 421 244 128 45 chr9 64009657 64009790 -60066382 + B1_Mur1 SINE Alu 1 144 -5 3 1073 325 262 52 10 chr9 64009800 64009916 -60066256 + B1F SINE Alu 1 120 0 3 1073 22 56 0 0 chr9 64010166 64010202 -60065970 + AT_rich Low_complexity Low_complexity 1 36 0 3 1073 210 382 0 0 chr9 64010625 64010701 -60065471 + ID4_ SINE ID 1 76 -7 3 1073 546 331 25 13 chr9 64010818 64010977 -60065195 + B3A SINE B2 5 165 -33 3 1073 1228 61 0 0 chr9 64011208 64011356 -60064816 - B1_Mus1 SINE Alu 0 148 1 3 1073 21 36 0 0 chr9 64011399 64011427 -60064745 + AT_rich Low_complexity Low_complexity 1 28 0 3 1073 276 264 14 0 chr9 64011604 64011676 -60064496 + ID4_ SINE ID 1 73 -10 3 1073 704 188 23 0 chr9 64011693 64011826 -60064346 + B1_Mur4 SINE Alu 2 137 -13 3 1073 495 0 0 0 chr9 64011828 64011883 -60064289 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1073 842 80 168 0 chr9 64011995 64012120 -60064052 + B1_Mus1 SINE Alu 3 148 0 4 1073 230 111 0 0 chr9 64012349 64012385 -60063787 + B3 SINE B2 3 38 -178 4 1073 544 162 34 67 chr9 64012380 64012499 -60063673 - B3A SINE B2 -82 116 2 4 1073 288 0 0 0 chr9 64012817 64012849 -60063323 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 4 1073 561 103 247 0 chr9 64012850 64012947 -60063225 - B1_Mus1 SINE Alu -10 138 18 4 1073 217 250 83 0 chr9 64012902 64012962 -60063210 - B4A SINE B4 -146 146 82 4 1073 1234 71 6 0 chr9 64013416 64013584 -60062588 + B2_Mm2 SINE B2 4 172 -23 4 1073 545 274 219 4 chr9 64013605 64013843 -60062329 + B4A SINE B4 2 290 -2 4 1073 324 276 20 30 chr9 64014136 64014237 -60061935 - RSINE1 SINE B4 0 165 66 4 1073 585 166 330 5 chr9 64014556 64014747 -60061425 + RMER4B LTR ERVK 327 579 -6 5 1073 388 294 165 48 chr9 64014830 64015205 -60060967 + MLT1C LTR MaLR 41 459 -8 5 1073 869 191 137 5 chr9 64015486 64015676 -60060496 - B3 SINE B2 0 216 2 5 1073 639 248 28 0 chr9 64015781 64015922 -60060250 - B1_Mus2 SINE Alu -1 146 2 5 1073 248 111 0 0 chr9 64016053 64016089 -60060083 + B1_Mus1 SINE Alu 2 37 -111 5 1073 262 327 116 11 chr9 64016094 64016369 -60059803 + L1ME1 LINE L1 5874 6177 -2 5 1073 330 191 180 0 chr9 64016649 64016738 -60059434 + PB1D9 SINE Alu 11 115 -5 5 1073 750 199 53 34 chr9 64016777 64016985 -60059187 + B3 SINE B2 5 216 0 5 1073 569 218 48 0 chr9 64017046 64017170 -60059002 - B3A SINE B2 -64 134 5 5 1073 285 336 29 9 chr9 64017220 64017325 -60058847 + PB1D10 SINE Alu 11 117 0 5 1073 1220 48 0 0 chr9 64017327 64017474 -60058698 + B1_Mm SINE Alu 1 147 0 6 1073 1213 86 86 0 chr9 64017567 64017742 -60058430 + B2_Mm2 SINE B2 2 191 -4 6 1073 1596 32 27 0 chr9 64017747 64017935 -60058237 + B2_Mm1a SINE B2 1 193 0 6 1073 282 329 35 12 chr9 64018475 64018561 -60057611 - RSINE1 SINE B4 -7 158 71 6 1073 348 336 75 7 chr9 64019182 64019253 -60056919 + ID SINE ID 1 81 -143 6 1073 211 365 0 45 chr9 64019253 64019342 -60056830 + PB1D10 SINE Alu 1 85 -32 6 1073 1069 98 0 0 chr9 64019449 64019592 -60056580 + B1_Mus2 SINE Alu 5 147 0 6 1073 663 164 0 8 chr9 64019653 64019782 -60056390 + B1_Mus1 SINE Alu 1 128 -20 6 1073 198 0 0 0 chr9 64019784 64019806 -60056366 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1073 1091 43 50 0 chr9 64019806 64019946 -60056226 - B1_Mus2 SINE Alu 0 147 1 6 1073 322 263 67 17 chr9 64020086 64020206 -60055966 + MER5A DNA MER1_type 40 165 -24 7 1073 1139 74 0 7 chr9 64024255 64024404 -60051768 - B1_Mus1 SINE Alu 0 148 1 7 1073 212 245 0 20 chr9 64025932 64025982 -60050190 - PB1D7 SINE Alu -65 55 7 7 1073 21 0 0 0 chr9 64026444 64026465 -60049707 + AT_rich Low_complexity Low_complexity 1 21 0 7 1073 226 302 45 23 chr9 64027925 64028013 -60048159 - B1_Mur4 SINE Alu -12 138 49 7 1073 609 188 36 0 chr9 64028032 64028144 -60048028 + B1_Mur4 SINE Alu 10 125 -25 7 1073 344 311 30 22 chr9 64028144 64028165 -60048007 + ID_B1 SINE B4 90 223 -1 7 1073 314 250 0 0 chr9 64028554 64028618 -60047554 - ID4_ SINE ID -19 64 1 7 1073 656 122 186 8 chr9 64029492 64029616 -60046556 - B1_Mm SINE Alu 0 147 2 7 1073 1467 73 5 0 chr9 64029688 64029879 -60046293 + B2_Mm1a SINE B2 2 193 0 7 1073 300 111 0 0 chr9 64030019 64030064 -60046108 + (GGA)n Simple_repeat Simple_repeat 1 45 0 8 1073 707 273 44 5 chr9 64030177 64030383 -60045789 + B4A SINE B4 8 221 -71 8 1073 319 130 65 34 chr9 64030843 64030923 -60045249 + B1_Mur2 SINE Alu 40 143 -6 8 1073 1202 61 0 0 chr9 64031059 64031206 -60044966 + B1_Mus2 SINE Alu 1 147 0 8 1073 453 280 110 0 chr9 64031267 64031385 -60044787 - RSINE1 SINE B4 0 165 35 8 1073 1111 67 0 0 chr9 64031444 64031579 -60044593 + B1_Mus1 SINE Alu 2 136 -12 8 1073 1165 75 0 0 chr9 64031751 64031898 -60044274 - B1_Mus1 SINE Alu 0 148 2 8 1073 558 147 82 0 chr9 64032171 64032290 -60043882 + MTC LTR MaLR 8 142 -277 8 1073 533 199 76 44 chr9 64032303 64032461 -60043711 + MTC LTR MaLR 227 389 -32 8 1073 536 238 41 8 chr9 64032644 64032767 -60043405 - B1_Mur2 SINE Alu 0 149 23 8 1073 1192 178 247 15 chr9 64032795 64033131 -60043041 + MTD LTR MaLR 6 419 0 8 1073 1616 146 172 9 chr9 64033191 64033523 -60042649 - ORR1B1 LTR MaLR -8 386 1 9 1073 296 273 122 47 chr9 64036094 64036230 -60039942 + PB1D7 SINE Alu 11 149 0 9 1073 266 233 40 27 chr9 64036247 64036322 -60039850 + ID4 SINE ID 8 83 0 9 1073 1152 75 0 26 chr9 64037558 64037709 -60038463 - B1_Mus2 SINE Alu 0 147 1 9 1073 365 281 31 10 chr9 64038069 64038166 -60038006 - PB1D10 SINE Alu -7 110 12 9 1073 916 231 55 0 chr9 64038231 64038430 -60037742 - B3 SINE B2 -5 211 2 9 1073 183 42 0 0 chr9 64038444 64038468 -60037704 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1073 871 134 7 7 chr9 64038468 64038611 -60037561 - B1_Mus1 SINE Alu 0 148 6 9 1073 276 252 72 0 chr9 64038501 64038640 -60037532 - ORR1B1-int LTR MaLR -748 761 613 9 1073 925 132 0 93 chr9 64038626 64038671 -60037501 - B2_Mm2 SINE B2 -19 176 148 9 1073 1542 47 5 16 chr9 64038671 64038864 -60037308 - B2_Mm1a SINE B2 -1 192 2 1 1073 925 132 0 93 chr9 64038864 64039001 -60037171 - B2_Mm2 SINE B2 -48 147 11 9 1073 180 229 0 0 chr9 64039791 64039826 -60036346 + MIRc SINE MIR 117 151 -117 1 1073 545 189 75 0 chr9 64041872 64041978 -60034194 + B1_Mus1 SINE Alu 35 148 0 1 1073 245 258 32 0 chr9 64042077 64042139 -60034033 - PB1D10 SINE Alu -53 64 1 1 1073 681 174 42 42 chr9 64042162 64042306 -60033866 - B1_Mur4 SINE Alu -6 144 1 1 1073 1264 41 0 0 chr9 64044505 64044652 -60031520 - B1_Mm SINE Alu 0 147 1 1 1073 189 0 0 0 chr9 64044667 64044688 -60031484 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1073 796 221 110 5 chr9 64045481 64045672 -60030500 - ID_B1 SINE B4 -13 211 1 1 1073 185 0 0 39 chr9 64045859 64045885 -60030287 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1073 2607 95 60 16 chr9 64046844 64047230 -60028942 + RLTR9D LTR ERVK 1 403 0 1 1073 830 229 177 12 chr9 64047426 64047674 -60028498 + B4A SINE B4 1 289 -3 1 1073 866 120 221 1 chr9 64047724 64047929 -60028243 - MTD LTR MaLR -13 406 113 1 1073 365 240 94 57 chr9 64047927 64048033 -60028139 + ID_B1 SINE B4 78 187 -37 1 1073 555 147 211 0 chr9 64047941 64048050 -60028122 + B1_Mur4 SINE Alu 6 137 -13 1 1073 305 194 0 0 chr9 64048047 64048109 -60028063 - MTD LTR MaLR -348 73 12 1 1073 443 169 34 62 chr9 64048878 64048988 -60027184 - B1_Mur1 SINE Alu -14 133 25 1 1073 189 107 0 0 chr9 64049765 64049793 -60026379 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 1 1073 1124 95 0 0 chr9 64049846 64049993 -60026179 + B1_Mus1 SINE Alu 2 148 0 1 1073 469 232 7 72 chr9 64050133 64050286 -60025886 - Lx5 LINE L1 0 7050 6908 1 1073 532 294 169 81 chr9 64050299 64050471 -60025701 - MER58B DNA MER1_type -7 334 167 1 1073 813 188 14 0 chr9 64050471 64050615 -60025557 - B1_Mur2 SINE Alu -2 147 2 1 1073 532 294 169 81 chr9 64050615 64050749 -60025423 - MER58B DNA MER1_type -175 166 1 1 1073 189 0 0 0 chr9 64050779 64050800 -60025372 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1073 284 171 70 44 chr9 64051212 64051298 -60024874 + B1_Mur3 SINE Alu 53 143 -6 1 1073 1221 94 67 0 chr9 64051305 64051485 -60024687 + B2_Mm2 SINE B2 3 194 -1 1 1073 637 182 37 15 chr9 64051508 64051642 -60024530 + B1_Mur1 SINE Alu 8 144 -5 1 1073 275 233 174 0 chr9 64051670 64051756 -60024416 - PB1D9 SINE Alu -15 105 5 1 1073 1200 68 0 0 chr9 64051811 64051959 -60024213 - B1_Mus1 SINE Alu 0 148 1 1 1073 1434 65 11 0 chr9 64051974 64052159 -60024013 - B2_Mm1t SINE B2 -6 187 1 1 1073 600 218 31 25 chr9 64052578 64052738 -60023434 + ID_B1 SINE B4 1 161 -63 1 1073 199 377 102 44 chr9 64053232 64053457 -60022715 + MIR SINE MIR 1 238 -24 1 1073 387 269 118 0 chr9 64053462 64053581 -60022591 + RSINE1 SINE B4 2 134 -31 1 1073 387 0 0 0 chr9 64053588 64053631 -60022541 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1073 839 220 17 22 chr9 64053656 64053837 -60022335 + B3 SINE B2 7 186 -30 1 1073 553 259 8 0 chr9 64053854 64053985 -60022187 - B3 SINE B2 -68 148 17 1 1073 430 61 0 29 chr9 64053985 64054053 -60022119 + (GGGGA)n Simple_repeat Simple_repeat 2 67 0 1 1073 777 209 86 45 chr9 64054242 64054463 -60021709 + B4A SINE B4 25 254 -38 1 1073 188 214 18 0 chr9 64055250 64055306 -60020866 + GA-rich Low_complexity Low_complexity 1 57 0 1 1073 216 97 0 0 chr9 64055342 64055373 -60020799 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 1073 261 301 0 14 chr9 64057445 64057519 -60018653 + B1F2 SINE Alu 2 74 -75 1 1073 363 44 0 0 chr9 64057520 64057565 -60018607 + (GGA)n Simple_repeat Simple_repeat 2 46 0 1 1073 577 250 45 0 chr9 64057583 64057715 -60018457 + B1_Mur1 SINE Alu 2 139 -10 1 1073 1833 170 88 95 chr9 64058384 64058676 -60017496 + MTD LTR MaLR 1 316 -103 1 1073 1255 34 0 0 chr9 64058676 64058823 -60017349 + B1_Mm SINE Alu 1 147 0 1 1073 1833 170 88 95 chr9 64058823 64058952 -60017220 + MTD LTR MaLR 317 419 0 1 1073 1453 77 0 6 chr9 64059355 64059537 -60016635 + B2_Mm2 SINE B2 1 181 -14 1 1073 579 26 0 13 chr9 64059553 64059631 -60016541 - B1_Mur4 SINE Alu -3 147 71 1 1073 353 259 12 0 chr9 64060643 64060724 -60015448 - ID4_ SINE ID 0 83 2 1 1073 344 268 130 0 chr9 64060731 64060854 -60015318 - B1F SINE Alu -8 141 3 1 1073 35 0 0 0 chr9 64060854 64060889 -60015283 + AT_rich Low_complexity Low_complexity 1 35 0 1 1073 252 316 13 0 chr9 64060934 64061013 -60015159 - RSINE1 SINE B4 0 165 86 1 1073 201 217 0 21 chr9 64061016 64061063 -60015109 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 1 1073 490 194 28 0 chr9 64061063 64061171 -60015001 - B3 SINE B2 -105 111 1 1 1073 1112 58 0 0 chr9 64061979 64062116 -60014056 + B1_Mus1 SINE Alu 2 138 -10 1 1073 252 0 0 0 chr9 64062116 64062144 -60014028 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1073 581 246 40 35 chr9 64062717 64062890 -60013282 + B3A SINE B2 9 182 -16 1 1073 434 252 34 51 chr9 64062914 64063031 -60013141 + PB1D10 SINE Alu 1 115 -2 1 1073 204 40 0 0 chr9 64063136 64063161 -60013011 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1073 1102 61 0 45 chr9 64063161 64063315 -60012857 - B1_Mm SINE Alu 0 147 1 1 1073 548 279 57 60 chr9 64063462 64063744 -60012428 - B4 SINE B4 -11 281 1 1 1073 429 153 0 0 chr9 64063851 64063923 -60012249 - B1_Mur2 SINE Alu -16 133 62 1 1073 284 310 71 54 chr9 64064781 64064965 -60011207 + MLT1A0 LTR MaLR 161 347 -18 1 1073 266 267 119 107 chr9 64065275 64065443 -60010729 + ID_B1 SINE B4 2 171 -53 1 1073 354 191 131 0 chr9 64065385 64065469 -60010703 + PB1D10 SINE Alu 23 117 0 1 1073 203 283 0 0 chr9 64065477 64065523 -60010649 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1073 204 246 0 44 chr9 64065669 64065737 -60010435 - MIRc SINE MIR -170 98 34 1 1073 455 244 3 0 chr9 64065937 64066046 -60010126 + B1F1 SINE Alu 10 120 0 1 1073 472 300 6 62 chr9 64066046 64066139 -60010033 + B4 SINE B4 2 85 -207 1 1073 408 176 174 12 chr9 64066139 64066225 -60009947 + B1_Mus2 SINE Alu 2 101 -46 1 1073 288 172 0 0 chr9 64067154 64067212 -60008960 + CT-rich Low_complexity Low_complexity 1 58 0 1 1073 396 0 0 0 chr9 64067213 64067257 -60008915 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1073 223 189 90 29 chr9 64067592 64067684 -60008488 - MIRc SINE MIR -32 176 83 1 1073 430 246 29 71 chr9 64067724 64067864 -60008308 - B1_Mur2 SINE Alu -13 136 3 1 1073 1164 70 0 0 chr9 64068085 64068228 -60007944 + B1_Mus2 SINE Alu 5 147 0 1 1073 266 265 0 0 chr9 64068236 64068304 -60007868 + B3A SINE B2 5 72 -126 1 1073 349 169 0 58 chr9 64068363 64068432 -60007740 - B3 SINE B2 -8 208 144 1 1073 256 294 91 9 chr9 64068576 64068686 -60007486 + PB1D7 SINE Alu 2 120 0 1 1073 327 231 189 8 chr9 64068760 64068882 -60007290 + B1_Mur1 SINE Alu 1 144 -5 1 1073 486 263 17 8 chr9 64068934 64069053 -60007119 + PB1D9 SINE Alu 1 120 0 1 1073 834 73 0 68 chr9 64069219 64069365 -60006807 + B1_Mur4 SINE Alu 15 150 0 1 1073 21 0 0 0 chr9 64069365 64069386 -60006786 + AT_rich Low_complexity Low_complexity 1 21 0 1 1073 276 30 0 0 chr9 64069423 64069456 -60006716 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1073 371 240 164 8 chr9 64070155 64070277 -60005895 - B3 SINE B2 -75 141 1 1 1073 180 0 0 0 chr9 64070286 64070306 -60005866 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1073 2478 83 6 3 chr9 64070493 64070819 -60005353 + ORR1A2 LTR MaLR 1 327 0 1 1073 415 210 393 13 chr9 64070902 64071052 -60005120 + ID_B1 SINE B4 8 216 -8 1 1073 264 59 0 0 chr9 64071052 64071086 -60005086 + (CAAAG)n Simple_repeat Simple_repeat 1 34 0 1 1073 751 225 46 6 chr9 64071105 64071279 -60004893 + B3A SINE B2 2 182 -16 1 1073 1185 50 0 0 chr9 64071287 64071427 -60004745 + B1_Mm SINE Alu 1 140 -7 1 1073 207 0 0 0 chr9 64071434 64071457 -60004715 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1073 209 260 0 0 chr9 64071461 64071511 -60004661 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1073 788 226 7 0 chr9 64071890 64072036 -60004136 + B1_Mm SINE Alu 1 147 0 1 1073 1250 48 0 0 chr9 64072048 64072195 -60003977 + B1_Mus2 SINE Alu 1 147 0 1 1073 240 35 0 0 chr9 64072195 64072224 -60003948 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1073 3385 147 139 85 chr9 64072292 64073148 -60003024 + RMER19B LTR ERVK 1 902 0 1 1073 237 295 72 21 chr9 64073145 64073169 -60003003 - PB1D10 SINE Alu -15 102 33 1 1073 271 270 0 16 chr9 64073169 64073233 -60002939 - ID_B1 SINE B4 -68 156 94 1 1073 678 181 69 5 chr9 64073347 64073477 -60002695 - B1F SINE Alu -90 221 28 1 1073 397 323 76 128 chr9 64073791 64074048 -60002124 + MER21B LTR ERV1 60 485 -378 1 1073 407 321 98 43 chr9 64074048 64074325 -60001847 + MER77 LTR ERVL 308 599 -8 1 1073 397 323 76 128 chr9 64074325 64074434 -60001738 + MER21B LTR ERV1 486 669 -194 1 1073 785 29 0 0 chr9 64074825 64074927 -60001245 - B1_Mus1 SINE Alu -45 103 2 1 1073 437 179 24 104 chr9 64074927 64074942 -60001230 - MT2B LTR ERVL -334 233 153 1 1073 300 214 8 125 chr9 64074972 64074995 -60001177 + MT2B LTR ERVL 145 152 -449 1 1073 811 176 7 7 chr9 64074995 64075144 -60001028 + B1_Mur3 SINE Alu 1 149 0 1 1073 964 114 119 12 chr9 64075148 64075308 -60000864 + B2_Mm1t SINE B2 3 179 -14 2 1073 325 95 302 50 chr9 64075321 64075440 -60000732 + B2_Mm2 SINE B2 47 195 0 2 1073 497 214 26 18 chr9 64075937 64076051 -60000121 - PB1D10 SINE Alu 0 117 3 2 1073 952 133 0 13 chr9 64076134 64076286 -59999886 - B1_Mur4 SINE Alu 0 150 1 2 1073 1350 93 0 35 chr9 64077343 64077543 -59998629 + B2_Mm2 SINE B2 2 194 -1 2 1073 212 310 0 17 chr9 64078002 64078061 -59998111 + polypyrimidine Low_complexity Low_complexity 5 62 0 2 1073 526 252 113 43 chr9 64078240 64078381 -59997791 + RSINE1 SINE B4 15 165 0 2 1073 465 305 21 126 chr9 64078439 64078630 -59997542 + B4 SINE B4 2 172 -120 2 1073 231 306 14 0 chr9 64078640 64078712 -59997460 + RSINE1 SINE B4 93 165 0 2 1073 213 39 0 0 chr9 64078728 64078754 -59997418 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1073 264 325 34 9 chr9 64079489 64079620 -59996552 - MIRb SINE MIR -100 168 38 2 1073 634 257 0 45 chr9 64080814 64080969 -59995203 - B1_Mur1 SINE Alu 0 149 2 2 1073 1375 101 21 0 chr9 64081109 64081297 -59994875 + B2_Mm2 SINE B2 3 194 -1 2 1073 399 127 0 0 chr9 64081299 64081362 -59994810 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1073 536 271 48 0 chr9 64082106 64082272 -59993900 + MER3 DNA MER1_type 18 191 -18 2 1073 202 342 26 0 chr9 64082348 64082424 -59993748 + MIRb SINE MIR 52 129 -139 2 1073 198 0 0 0 chr9 64083865 64083887 -59992285 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1073 911 177 7 0 chr9 64083930 64084077 -59992095 + B1_Mus1 SINE Alu 1 148 0 2 1073 235 146 0 0 chr9 64084283 64084324 -59991848 - RSINE1 SINE B4 -58 107 67 2 1073 3509 18 5 0 chr9 64084436 64084830 -59991342 - MTA_Mm LTR MaLR 0 396 1 2 1073 9254 35 4 1 chr9 64084830 64085925 -59990247 - MTA_Mm-int LTR MaLR 0 1098 1 2 1073 3533 15 5 0 chr9 64085925 64086319 -59989853 - MTA_Mm LTR MaLR 0 396 1 2 1073 207 100 0 0 chr9 64086972 64087002 -59989170 + (TCC)n Simple_repeat Simple_repeat 1 30 0 2 1073 428 262 133 16 chr9 64087002 64087130 -59989042 - B1_Mur1 SINE Alu -5 144 2 2 1073 22 0 0 0 chr9 64088227 64088249 -59987923 + AT_rich Low_complexity Low_complexity 1 22 0 2 1073 261 0 0 0 chr9 64088422 64088451 -59987721 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1073 297 0 0 0 chr9 64088457 64088490 -59987682 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1073 237 259 73 11 chr9 64088702 64088828 -59987344 + L2c LINE L2 3058 3188 -187 2 1073 952 62 132 0 chr9 64089244 64089373 -59986799 - B1_Mus2 SINE Alu 0 147 2 2 1073 23 33 0 0 chr9 64089418 64089448 -59986724 + AT_rich Low_complexity Low_complexity 1 30 0 2 1073 973 58 7 7 chr9 64089449 64089587 -59986585 + B1_Mus1 SINE Alu 11 148 0 2 1073 338 171 86 0 chr9 64089677 64089747 -59986425 + MTC LTR MaLR 10 85 -336 2 1073 240 59 0 0 chr9 64089813 64089847 -59986325 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1073 388 125 126 135 chr9 64089850 64089961 -59986211 - B1_Mur4 SINE Alu 0 150 41 2 1073 318 50 0 0 chr9 64089962 64090002 -59986170 + (CCTG)n Simple_repeat Simple_repeat 4 43 0 2 1073 182 118 29 0 chr9 64090003 64090037 -59986135 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 2 1073 1764 152 38 23 chr9 64090042 64090385 -59985787 + MTC LTR MaLR 74 421 0 2 1073 552 235 15 0 chr9 64090386 64090518 -59985654 + B1_Mur1 SINE Alu 13 146 -3 2 1073 252 0 0 0 chr9 64090522 64090550 -59985622 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1073 375 224 131 0 chr9 64090714 64090821 -59985351 + PB1 SINE Alu 4 124 -3 2 1073 512 214 0 41 chr9 64090841 64090963 -59985209 + RSINE1 SINE B4 3 119 -46 2 1073 342 0 0 0 chr9 64090989 64091027 -59985145 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1073 285 29 0 0 chr9 64091027 64091060 -59985112 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1073 1174 160 78 0 chr9 64091483 64091714 -59984458 + Lx9 LINE L1 6826 7074 -570 2 1073 423 0 0 0 chr9 64091899 64091946 -59984226 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1073 242 355 0 0 chr9 64092108 64092184 -59983988 + ID4 SINE ID 8 83 0 2 1073 1691 31 0 0 chr9 64092375 64092568 -59983604 + B2_Mm1a SINE B2 1 193 0 2 1073 517 241 207 0 chr9 64092765 64092939 -59983233 - ID_B1 SINE B4 -13 211 2 2 1073 397 229 0 0 chr9 64093256 64093326 -59982846 + ID4 SINE ID 3 72 -11 2 1073 806 215 146 6 chr9 64093530 64093708 -59982464 - B3 SINE B2 -13 203 1 2 1073 648 211 0 29 chr9 64093711 64093848 -59982324 - B1_Mur1 SINE Alu -7 142 10 2 1073 245 273 128 29 chr9 64093900 64094002 -59982170 - L2a LINE L2 -28 3398 3287 2 134 214 247 53 27 chr9 64094206 64094281 -59981891 - MIRc SINE MIR -94 174 98 2 1074 1152 75 87 49 chr9 64094412 64094595 -59981577 + B2_Mm2 SINE B2 2 191 -4 2 1074 396 362 36 0 chr9 64094601 64094739 -59981433 + RSINE1 SINE B4 3 145 -20 2 1074 258 32 0 0 chr9 64094739 64094770 -59981402 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1074 904 256 90 24 chr9 64095167 64095543 -59980629 + Ricksha_0 DNA MuDR 1203 1603 -130 2 1074 33 43 0 0 chr9 64095547 64095594 -59980578 + AT_rich Low_complexity Low_complexity 1 47 0 2 1074 529 299 7 0 chr9 64095598 64095735 -59980437 + B1_Mur2 SINE Alu 5 142 -7 2 1074 712 148 8 23 chr9 64095808 64095939 -59980233 - B1_Mur4 SINE Alu 0 150 22 2 1074 1048 64 0 0 chr9 64095974 64096115 -59980057 + B1_Mus1 SINE Alu 8 148 0 2 1074 1820 112 60 90 chr9 64096263 64096628 -59979544 + ORR1B1 LTR MaLR 41 394 0 2 1074 1701 21 0 0 chr9 64096667 64096856 -59979316 + B2_Mm1a SINE B2 2 190 -3 2 1074 1155 68 0 7 chr9 64096861 64097009 -59979163 + B1_Mus2 SINE Alu 1 147 0 2 1074 545 366 6 0 chr9 64097394 64097569 -59978603 + G-rich Low_complexity Low_complexity 5 180 0 2 1074 254 260 94 51 chr9 64098353 64098491 -59977681 - MIR SINE MIR -71 191 48 2 1074 246 254 0 33 chr9 64098631 64098692 -59977480 + B4A SINE B4 82 140 -152 2 1074 648 188 94 0 chr9 64098643 64098771 -59977401 + B1_Mus1 SINE Alu 8 147 -1 2 1074 497 271 56 31 chr9 64098797 64098957 -59977215 - RSINE1 SINE B4 0 165 2 2 1074 473 232 98 109 chr9 64099131 64099315 -59976857 + B3A SINE B2 2 183 -15 2 1074 1992 155 100 5 chr9 64099345 64099714 -59976458 + Lx3C LINE L1 6571 6974 -2 2 1074 37 23 0 0 chr9 64099714 64099758 -59976414 + AT_rich Low_complexity Low_complexity 1 44 0 2 1074 512 178 142 17 chr9 64101847 64101967 -59974205 + B1_Mur2 SINE Alu 15 149 0 2 1074 549 256 52 52 chr9 64102196 64102390 -59973782 + B3A SINE B2 5 198 0 2 1074 792 143 7 15 chr9 64102394 64102529 -59973643 + B1_Mus2 SINE Alu 14 147 0 2 1074 1579 48 5 0 chr9 64102530 64102719 -59973453 + B2_Mm1a SINE B2 3 192 -1 2 1074 221 200 128 118 chr9 64102796 64102809 -59973363 + B1F2 SINE Alu 34 136 -13 2 1074 350 148 34 90 chr9 64102809 64102898 -59973274 + ID_B1 SINE B4 128 211 -13 2 1074 1078 223 5 0 chr9 64103075 64103290 -59972882 + B3 SINE B2 1 216 0 2 1074 1208 278 73 0 chr9 64103614 64103956 -59972216 - MTEa LTR MaLR -8 371 5 2 1074 1285 92 54 5 chr9 64104329 64104514 -59971658 + B2_Mm2 SINE B2 2 195 0 2 1074 504 289 0 38 chr9 64104767 64104900 -59971272 + B1_Mur4 SINE Alu 11 138 -12 2 1074 441 49 0 0 chr9 64104919 64104980 -59971192 - B1_Mus2 SINE Alu -86 61 1 2 1074 353 123 0 44 chr9 64104920 64104988 -59971184 - B4 SINE B4 -147 145 81 2 1074 260 212 60 15 chr9 64105246 64105313 -59970859 - B4 SINE B4 -9 283 214 2 1074 457 282 12 69 chr9 64105334 64105355 -59970817 - B4A SINE B4 -60 232 217 2 1074 201 74 0 0 chr9 64105355 64105382 -59970790 + (GTTTG)n Simple_repeat Simple_repeat 1 27 0 2 1074 457 282 12 69 chr9 64105382 64105520 -59970652 - B4A SINE B4 -76 216 82 2 1074 3210 218 101 43 chr9 64105527 64105646 -59970526 - Lx7 LINE L1 -12 7684 7555 2 1074 1326 88 72 0 chr9 64105646 64105827 -59970345 + B2_Mm2 SINE B2 2 195 0 2 1074 3210 218 101 43 chr9 64105827 64106672 -59969500 - Lx7 LINE L1 -142 7554 6666 2 1074 180 0 0 0 chr9 64106672 64106692 -59969480 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1074 627 192 0 76 chr9 64106696 64106854 -59969318 - B4 SINE B4 -144 148 3 2 1074 556 222 0 9 chr9 64106901 64107010 -59969162 - PB1D9 SINE Alu -12 108 1 2 1074 507 147 29 19 chr9 64107013 64107117 -59969055 + B1_Mus2 SINE Alu 43 147 0 2 1074 438 94 0 0 chr9 64107141 64107205 -59968967 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 2 1074 567 102 0 0 chr9 64107242 64107330 -59968842 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1074 680 140 154 8 chr9 64107416 64107546 -59968626 - B1_Mur4 SINE Alu -1 149 1 2 1074 311 197 66 0 chr9 64107611 64107672 -59968500 - B3 SINE B2 -151 65 1 2 1074 508 246 159 53 chr9 64107699 64107888 -59968284 - B3 SINE B2 -6 210 2 2 1074 226 224 20 20 chr9 64108019 64108069 -59968103 - MurSatRep1 Unknown Unknown -1854 283 234 2 1074 27 0 0 0 chr9 64108105 64108132 -59968040 + AT_rich Low_complexity Low_complexity 1 27 0 2 1074 1160 56 0 0 chr9 64108174 64108316 -59967856 + B1_Mus1 SINE Alu 1 142 -6 2 1074 547 135 0 28 chr9 64108317 64108424 -59967748 + GA-rich Low_complexity Low_complexity 1 104 0 2 1074 1430 79 16 0 chr9 64109082 64109271 -59966901 + B2_Mm2 SINE B2 2 193 -2 2 1074 297 51 0 0 chr9 64109312 64109351 -59966821 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1074 278 240 93 0 chr9 64109416 64109491 -59966681 + ID4 SINE ID 2 83 0 3 1074 1144 191 69 24 chr9 64109594 64109841 -59966331 + MTD LTR MaLR 154 411 -8 3 1074 459 0 0 0 chr9 64110181 64110232 -59965940 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1074 272 202 173 25 chr9 64110233 64110314 -59965858 + B4A SINE B4 6 98 -194 3 1074 270 309 0 86 chr9 64110343 64110460 -59965712 + B4A SINE B4 186 292 0 3 1074 518 307 7 14 chr9 64110554 64110696 -59965476 - RSINE1 SINE B4 0 165 25 3 1074 623 192 1 69 chr9 64110712 64110890 -59965282 - RMER1B Other Other -2 1064 859 3 1074 1283 202 111 9 chr9 64111057 64111382 -59964790 - RMER1B Other Other -156 910 553 3 1074 41 0 0 0 chr9 64111403 64111444 -59964728 + AT_rich Low_complexity Low_complexity 1 41 0 3 1074 509 237 53 36 chr9 64111450 64111632 -59964540 - B3A SINE B2 -4 212 27 3 1074 180 111 0 0 chr9 64111644 64111671 -59964501 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1074 510 259 0 0 chr9 64111687 64111830 -59964342 + (TA)n Simple_repeat Simple_repeat 2 144 0 3 1074 343 227 27 0 chr9 64111839 64111914 -59964258 - B1_Mur4 SINE Alu -69 81 5 3 1074 245 258 16 16 chr9 64111861 64111924 -59964248 - B4 SINE B4 -150 142 80 3 1074 258 265 0 14 chr9 64111924 64111993 -59964179 + L1ME2 LINE L1 5919 5986 -178 3 1074 385 205 138 49 chr9 64112015 64112138 -59964034 - B1F2 SINE Alu -14 135 2 3 1074 507 266 47 8 chr9 64112192 64112321 -59963851 + B1_Mur1 SINE Alu 1 134 -15 3 1074 225 0 0 0 chr9 64112366 64112391 -59963781 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1074 1170 82 0 0 chr9 64112391 64112537 -59963635 - B1_Mus2 SINE Alu 0 147 2 3 1074 493 226 105 0 chr9 64112542 64112666 -59963506 - B1_Mm SINE Alu -6 141 5 3 1074 924 222 45 10 chr9 64112697 64112897 -59963275 - B3 SINE B2 -5 211 5 3 1074 198 156 0 0 chr9 64113079 64113124 -59963048 + T-rich Low_complexity Low_complexity 1 45 0 3 1074 3901 40 0 6 chr9 64113127 64113601 -59962571 - L1Md_F2 LINE L1 -1 6581 6111 3 1074 308 44 22 0 chr9 64113726 64113771 -59962401 + B1_Mm SINE Alu 84 129 -18 3 1074 501 17 0 0 chr9 64113778 64113836 -59962336 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 3 1074 349 253 13 0 chr9 64113872 64113951 -59962221 - B3A SINE B2 -117 81 2 3 1074 720 224 12 24 chr9 64113952 64114098 -59962074 + B3 SINE B2 33 176 -40 3 1074 276 111 0 0 chr9 64114098 64114143 -59962029 + (CATA)n Simple_repeat Simple_repeat 1 45 0 3 1074 720 224 12 24 chr9 64114143 64114165 -59962007 + B3 SINE B2 177 198 -18 3 1074 183 80 0 0 chr9 64114166 64114191 -59961981 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3 1074 1144 118 16 31 chr9 64114222 64114414 -59961758 + B2_Mm2 SINE B2 2 190 -5 3 1074 857 99 0 84 chr9 64114426 64114580 -59961592 + B1_Mm SINE Alu 6 146 -1 3 1074 237 98 0 0 chr9 64114587 64114628 -59961544 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1074 767 76 0 0 chr9 64114633 64114738 -59961434 + B1_Mus1 SINE Alu 2 106 -42 3 1074 380 100 17 0 chr9 64114734 64114794 -59961378 - B2_Mm2 SINE B2 -133 62 2 3 1074 272 0 0 73 chr9 64114794 64114821 -59961351 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 3 1074 1401 89 5 5 chr9 64114821 64115013 -59961159 - B2_Mm1t SINE B2 -1 192 1 3 1074 272 0 0 73 chr9 64115013 64115026 -59961146 + (TTTTTA)n Simple_repeat Simple_repeat 2 14 0 3 1074 276 53 0 0 chr9 64115056 64115094 -59961078 - B3A SINE B2 -160 38 1 3 1074 1676 89 116 63 chr9 64115183 64115484 -59960688 + ORR1A2 LTR MaLR 3 319 -8 3 1074 245 56 0 77 chr9 64115735 64115774 -59960398 - RMER10B LTR ERVL -1 397 362 3 1074 1193 56 0 0 chr9 64115782 64115926 -59960246 - B1_Mus1 SINE Alu 0 148 5 3 1074 519 103 22 44 chr9 64115928 64116019 -59960153 - RMER10B LTR ERVL -22 376 288 3 1074 738 148 53 7 chr9 64116016 64116166 -59960006 - RMER10B LTR ERVL -241 157 1 3 1074 234 0 0 0 chr9 64116539 64116565 -59959607 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 3 1074 421 129 233 12 chr9 64116715 64116801 -59959371 + B2_Mm2 SINE B2 1 105 -90 3 1074 1637 124 4 33 chr9 64116801 64116910 -59959262 + RLTR10E LTR ERVK 1 106 -205 3 1074 216 0 0 0 chr9 64116910 64116934 -59959238 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1074 1637 109 14 135 chr9 64116934 64117148 -59959024 + RLTR10E LTR ERVK 107 413 -23 3 1074 22 0 0 0 chr9 64117224 64117246 -59958926 + AT_rich Low_complexity Low_complexity 1 22 0 3 1074 501 223 367 6 chr9 64117255 64117413 -59958759 + B3 SINE B2 2 216 0 3 1074 24 0 0 0 chr9 64117770 64117794 -59958378 + AT_rich Low_complexity Low_complexity 1 24 0 3 1074 1235 48 0 0 chr9 64117911 64118057 -59958115 - B1_Mus1 SINE Alu 0 148 3 3 1074 1910 161 7 60 chr9 64118071 64118502 -59957670 - RMER17C LTR ERVK 0 410 3 3 1074 333 185 35 0 chr9 64118668 64118841 -59957331 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 3 1074 234 0 0 0 chr9 64118842 64118868 -59957304 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1074 203 346 0 0 chr9 64118899 64118980 -59957192 + C-rich Low_complexity Low_complexity 2 82 0 3 1074 324 0 0 0 chr9 64119486 64119522 -59956650 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1074 383 153 0 53 chr9 64119568 64119644 -59956528 + B1_Mur4 SINE Alu 2 73 -77 3 1074 345 209 261 9 chr9 64119708 64119764 -59956408 + B4A SINE B4 2 85 -207 3 1074 458 137 152 40 chr9 64119764 64119863 -59956309 + B1_Mur4 SINE Alu 2 111 -39 3 1074 1181 152 8 40 chr9 64119931 64120178 -59955994 + RMER10B LTR ERVL 6 244 -154 3 1074 849 161 74 6 chr9 64120166 64120341 -59955831 - B2_Mm2 SINE B2 -1 194 8 3 1074 951 166 26 16 chr9 64120332 64120522 -59955650 + RMER10B LTR ERVL 207 398 0 3 1074 233 191 43 29 chr9 64120525 64120595 -59955577 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 3 1074 224 224 52 0 chr9 64120633 64120691 -59955481 + B3A SINE B2 100 160 -38 3 1074 351 0 0 0 chr9 64120714 64120753 -59955419 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1074 677 158 97 8 chr9 64120774 64120908 -59955264 - B1_Mus2 SINE Alu -1 146 1 3 1074 212 265 0 0 chr9 64120941 64120990 -59955182 + ID4 SINE ID 3 51 -32 3 1074 320 253 95 16 chr9 64120995 64121152 -59955020 + L1MD2 LINE L1 5774 5941 -418 3 1074 599 192 10 0 chr9 64121169 64121273 -59954899 + B1_Mur1 SINE Alu 3 107 -42 3 1074 196 312 10 31 chr9 64121754 64121850 -59954322 + L2 LINE L2 1612 1705 -1714 3 1074 219 36 0 0 chr9 64122110 64122138 -59954034 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 1074 1066 100 0 0 chr9 64122138 64122278 -59953894 - B1_Mus1 SINE Alu -8 140 1 3 1074 566 203 27 68 chr9 64122323 64122471 -59953701 + B1_Mur2 SINE Alu 5 146 -3 3 1074 206 217 0 0 chr9 64122472 64122518 -59953654 + GA-rich Low_complexity Low_complexity 1 46 0 3 1074 744 213 39 22 chr9 64122583 64122761 -59953411 + B3A SINE B2 2 182 -16 3 1074 564 255 54 39 chr9 64122806 64123010 -59953162 + B3 SINE B2 1 207 -9 3 1074 416 253 49 74 chr9 64123152 64123314 -59952858 + B3A SINE B2 55 212 -4 3 1074 1465 69 5 11 chr9 64123398 64123589 -59952583 + B2_Mm1t SINE B2 2 191 -2 3 1074 1391 94 16 0 chr9 64123600 64123791 -59952381 + B2_Mm2 SINE B2 2 195 0 3 1074 209 103 0 25 chr9 64123792 64123817 -59952355 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 3 1074 934 149 35 60 chr9 64123817 64123848 -59952324 + B2_Mm2 SINE B2 1 30 -165 3 1074 230 56 28 0 chr9 64123854 64123890 -59952282 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 3 1074 880 89 63 56 chr9 64123890 64124025 -59952147 - B1_Mus2 SINE Alu -10 137 2 3 1074 934 149 35 60 chr9 64124025 64124193 -59951979 + B2_Mm2 SINE B2 31 195 0 3 1074 209 103 0 25 chr9 64124193 64124207 -59951965 + (GAAA)n Simple_repeat Simple_repeat 2 15 0 3 1074 1130 61 141 0 chr9 64124239 64124402 -59951770 + B2_Mm2 SINE B2 2 187 -8 3 1074 588 92 373 9 chr9 64124425 64124535 -59951637 - B1_Mur4 SINE Alu 0 150 1 3 1074 22 70 0 0 chr9 64124555 64124598 -59951574 + AT_rich Low_complexity Low_complexity 1 43 0 3 1074 315 49 0 0 chr9 64124609 64124650 -59951522 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1074 415 248 76 49 chr9 64124650 64124794 -59951378 - RSINE1 SINE B4 -5 160 13 3 1074 249 354 12 0 chr9 64124822 64124904 -59951268 - ID4_ SINE ID 0 83 1 3 1074 1218 34 0 14 chr9 64124973 64125121 -59951051 - B1_Mus2 SINE Alu 0 147 2 3 1074 1226 123 22 0 chr9 64125140 64125319 -59950853 + B2_Mm2 SINE B2 2 184 -11 3 1074 291 54 0 0 chr9 64125396 64125433 -59950739 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 3 1074 1190 55 7 0 chr9 64125452 64125598 -59950574 - B1_Mm SINE Alu 0 147 1 3 1074 725 244 71 15 chr9 64125628 64125824 -59950348 - B3 SINE B2 -6 210 4 3 1074 375 23 0 0 chr9 64125826 64125870 -59950302 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 3 1074 1173 36 22 0 chr9 64125872 64126011 -59950161 - B1_Mus1 SINE Alu -6 142 1 3 1074 1202 41 0 7 chr9 64126031 64126178 -59949994 - B1_Mm SINE Alu 0 147 2 3 1074 1602 43 0 0 chr9 64126190 64126376 -59949796 - B2_Mm1a SINE B2 -6 187 2 3 1074 207 191 0 0 chr9 64126402 64126444 -59949728 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1074 377 293 179 0 chr9 64126444 64126584 -59949588 - RSINE1 SINE B4 0 165 1 3 1074 855 203 67 29 chr9 64126606 64126767 -59949405 - B3 SINE B2 0 216 44 3 1074 2119 169 68 94 chr9 64126767 64127000 -59949172 + RLTR24 LTR ERV1 1 192 -337 3 1074 1327 92 38 0 chr9 64127000 64127185 -59948987 + B2_Mm1t SINE B2 2 193 0 3 1074 2119 169 68 94 chr9 64127185 64127494 -59948678 + RLTR24 LTR ERV1 193 529 0 3 1074 855 203 67 29 chr9 64127494 64127540 -59948632 - B3 SINE B2 -173 43 1 3 1074 1392 92 5 0 chr9 64127643 64127827 -59948345 + B2_Mm1a SINE B2 1 185 -8 4 1074 241 194 18 53 chr9 64127855 64128024 -59948148 + (CATA)n Simple_repeat Simple_repeat 2 164 0 4 1074 415 263 134 35 chr9 64128034 64128176 -59947996 - B3 SINE B2 -60 156 1 4 1074 673 262 48 14 chr9 64128187 64128396 -59947776 - B4 SINE B4 -75 217 2 4 1074 296 135 0 19 chr9 64128411 64128464 -59947708 - B1_Mur1 SINE Alu -2 147 96 4 1074 189 0 0 0 chr9 64128507 64128528 -59947644 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1074 1208 55 0 0 chr9 64128528 64128674 -59947498 - B1_Mus2 SINE Alu 0 147 2 4 1074 1404 65 43 5 chr9 64128734 64128920 -59947252 - B2_Mm2 SINE B2 -1 194 2 4 1074 189 107 0 0 chr9 64129093 64129121 -59947051 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1074 432 175 12 0 chr9 64129130 64129210 -59946962 - B1F1 SINE Alu -68 81 1 4 1074 251 211 55 128 chr9 64130271 64130380 -59945792 + RSINE1 SINE B4 20 120 -45 4 1074 377 230 140 21 chr9 64130372 64130606 -59945566 - RMER4B LTR ERVK -8 577 275 4 1074 548 174 212 24 chr9 64130617 64130782 -59945390 - RMER4B LTR ERVK -362 223 28 4 1074 1393 57 29 0 chr9 64130782 64130957 -59945215 - B2_Mm2 SINE B2 -14 181 2 4 1074 962 61 0 8 chr9 64131001 64131133 -59945039 + B1_Mus1 SINE Alu 18 148 0 4 1074 1327 82 44 0 chr9 64131318 64131501 -59944671 - B2_Mm2 SINE B2 -3 192 2 4 1074 952 109 65 0 chr9 64131553 64131691 -59944481 + B1_Mus1 SINE Alu 2 148 0 4 1074 474 238 68 15 chr9 64131753 64131885 -59944287 - B3A SINE B2 -56 142 4 4 1074 559 234 36 98 chr9 64131891 64132085 -59944087 - ID_B1 SINE B4 0 224 43 4 1074 214 291 36 0 chr9 64132133 64132188 -59943984 - PB1 SINE Alu -70 57 1 4 1074 1221 111 33 0 chr9 64132198 64132378 -59943794 + B2_Mm1t SINE B2 2 187 -6 4 1074 208 344 29 79 chr9 64132384 64132523 -59943649 - L2c LINE L2 0 3387 3256 4 1074 1514 68 5 0 chr9 64132577 64132768 -59943404 - B2_Mm1t SINE B2 0 193 2 4 1074 26 30 0 0 chr9 64132768 64132801 -59943371 + AT_rich Low_complexity Low_complexity 1 33 0 4 1074 1156 56 14 0 chr9 64132801 64132944 -59943228 + B1_Mm SINE Alu 2 146 -1 4 1074 1229 49 0 0 chr9 64132983 64133145 -59943027 - B2_Mm2 SINE B2 -32 163 2 4 1074 239 371 137 8 chr9 64133169 64133286 -59942886 + RSINE1 SINE B4 3 134 -31 4 1074 260 208 169 0 chr9 64133345 64133422 -59942750 - ID_B1 SINE B4 -33 191 102 4 1074 210 250 163 0 chr9 64133510 64133602 -59942570 + PB1 SINE Alu 19 125 -2 4 1074 481 315 61 18 chr9 64133605 64133770 -59942402 + B3A SINE B2 12 183 -15 4 1074 605 255 14 28 chr9 64133792 64133937 -59942235 + B1_Mus1 SINE Alu 2 144 -4 4 1074 375 258 175 0 chr9 64134056 64134176 -59941996 - ID_B1 SINE B4 0 224 84 4 1074 421 200 165 16 chr9 64134231 64134358 -59941814 - B1_Mur2 SINE Alu -2 147 2 4 1074 1638 26 0 45 chr9 64134378 64134578 -59941594 - B2_Mm1t SINE B2 -1 192 2 4 1074 185 246 145 40 chr9 64134737 64134813 -59941359 - L2 LINE L2 -838 2581 2498 4 1074 459 161 20 79 chr9 64134909 64135010 -59941162 + B1_Mur3 SINE Alu 46 140 -9 4 1074 722 215 107 25 chr9 64135176 64135372 -59940800 + B3 SINE B2 1 212 -4 4 1074 1457 28 79 0 chr9 64135414 64135592 -59940580 - B2_Mm1a SINE B2 0 193 2 4 1074 775 48 19 0 chr9 64135620 64135725 -59940447 - B1_Mm SINE Alu 0 147 41 4 1074 413 302 8 8 chr9 64136080 64136093 -59940079 - PB1D9 SINE Alu 0 120 108 4 1074 207 0 0 0 chr9 64136093 64136116 -59940056 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 4 1074 413 302 8 8 chr9 64136116 64136222 -59939950 - PB1D9 SINE Alu -13 107 2 4 1074 1375 93 5 15 chr9 64136239 64136435 -59939737 - B2_Mm2 SINE B2 0 195 2 4 1074 1089 117 60 22 chr9 64136442 64136458 -59939714 - B2_Mm2 SINE B2 -3 192 177 4 1074 1365 82 22 5 chr9 64136458 64136642 -59939530 - B2_Mm2 SINE B2 -8 187 1 4 1074 1089 117 60 22 chr9 64136642 64136809 -59939363 - B2_Mm2 SINE B2 -19 176 2 4 1074 1106 91 0 0 chr9 64136832 64136975 -59939197 + B1_Mus2 SINE Alu 5 147 0 4 1074 956 130 7 27 chr9 64137118 64137268 -59938904 + B1_Mur4 SINE Alu 3 149 -1 4 1074 659 136 0 0 chr9 64137373 64137476 -59938696 - B1_Mus2 SINE Alu 0 147 45 4 1074 1130 81 121 11 chr9 64137722 64137896 -59938276 - B2_Mm2 SINE B2 0 195 3 4 1074 1284 89 0 67 chr9 64137900 64138093 -59938079 - B2_Mm2 SINE B2 -15 180 1 4 1074 645 122 0 9 chr9 64138453 64138569 -59937603 + ORR1C2 LTR MaLR 36 150 -234 4 1074 390 116 0 80 chr9 64138569 64138644 -59937528 + ORR1C2 LTR MaLR 312 380 -4 4 1074 382 275 0 0 chr9 64138648 64138728 -59937444 - B1_Mur3 SINE Alu -69 80 1 4 1074 1787 145 34 10 chr9 64138764 64139057 -59937115 + Lx4A LINE L1 6759 7058 0 4 1074 1044 45 105 0 chr9 64139138 64139271 -59936901 + B1_Mus1 SINE Alu 2 148 0 4 1074 197 152 22 0 chr9 64139314 64139340 -59936832 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1074 243 0 0 0 chr9 64139340 64139367 -59936805 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1074 197 152 22 0 chr9 64139367 64139386 -59936786 + (TA)n Simple_repeat Simple_repeat 2 20 0 4 1074 243 0 0 0 chr9 64139613 64139640 -59936532 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1074 753 190 0 35 chr9 64139643 64139785 -59936387 - B1_Mus1 SINE Alu -6 142 6 4 1074 839 65 0 54 chr9 64139889 64140019 -59936153 + B1_Mus1 SINE Alu 26 148 0 4 1074 417 336 27 20 chr9 64140045 64140194 -59935978 - B3A SINE B2 -22 176 27 4 1074 303 154 0 0 chr9 64140208 64140260 -59935912 - B1_Mur4 SINE Alu -56 94 43 4 1074 1228 54 0 0 chr9 64140279 64140426 -59935746 - B1_Mus2 SINE Alu 0 147 1 4 1074 1644 47 0 0 chr9 64140603 64140795 -59935377 - B2_Mm1a SINE B2 0 193 2 4 1074 298 242 528 57 chr9 64140936 64141064 -59935108 - B4 SINE B4 -1 291 102 4 1074 1567 158 192 69 chr9 64141064 64141439 -59934733 - MTC LTR MaLR 0 421 1 4 1074 248 293 10 89 chr9 64141439 64141476 -59934696 - B4 SINE B4 -191 101 69 4 1074 233 75 0 24 chr9 64142366 64142407 -59933765 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1074 1495 92 0 5 chr9 64142652 64142848 -59933324 - B2_Mm2 SINE B2 0 195 1 4 1074 365 133 103 39 chr9 64142849 64142927 -59933245 + B1_Mus2 SINE Alu 53 135 -12 4 1074 300 274 0 177 chr9 64143124 64143166 -59933006 + PB1D9 SINE Alu 1 39 -81 4 1074 1434 59 37 0 chr9 64143166 64143353 -59932819 + B2_Mm2 SINE B2 1 194 -1 4 1074 578 217 0 16 chr9 64143353 64143471 -59932701 + B1_Mur2 SINE Alu 27 138 -11 4 1074 345 257 101 87 chr9 64143525 64143674 -59932498 + B4A SINE B4 71 221 -71 4 1074 961 68 45 0 chr9 64143547 64143680 -59932492 + B1_Mm SINE Alu 9 147 0 4 1074 662 186 0 0 chr9 64143962 64144075 -59932097 - B3A SINE B2 -85 113 1 4 1074 1185 61 0 0 chr9 64144103 64144250 -59931922 - B1_Mus1 SINE Alu 0 148 2 4 1074 1096 198 36 27 chr9 64144354 64144577 -59931595 - URR1B DNA MER1_type 0 225 1 4 1074 797 217 89 96 chr9 64145132 64145338 -59930834 + B4A SINE B4 2 230 -62 4 1074 1243 34 0 0 chr9 64145338 64145485 -59930687 + B1_Mus2 SINE Alu 1 147 0 4 1074 797 217 89 96 chr9 64145485 64145569 -59930603 + B4A SINE B4 231 290 -2 4 1074 534 272 8 23 chr9 64145580 64145708 -59930464 + RSINE1 SINE B4 40 165 0 4 1074 1353 71 38 0 chr9 64145752 64145936 -59930236 + B2_Mm1t SINE B2 2 192 -1 4 1074 246 32 0 0 chr9 64146173 64146204 -59929968 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1074 949 54 70 0 chr9 64146204 64146333 -59929839 - B1_Mus1 SINE Alu -10 138 1 4 1074 528 279 58 7 chr9 64146335 64146472 -59929700 - B1F SINE Alu 0 149 6 4 1074 403 163 204 11 chr9 64146520 64146613 -59929559 + B3 SINE B2 3 113 -103 4 1074 1050 56 0 0 chr9 64146647 64146789 -59929383 - B1_Mus1 SINE Alu 0 148 7 4 1074 1366 90 32 0 chr9 64146809 64146997 -59929175 - B2_Mm2 SINE B2 0 195 2 4 1074 394 227 0 11 chr9 64147268 64147357 -59928815 - B1_Mus2 SINE Alu -28 119 32 4 1074 257 194 32 0 chr9 64147413 64147475 -59928697 + L2 LINE L2 2816 2879 -540 4 1074 244 241 0 49 chr9 64147676 64147737 -59928435 - B1_Mus2 SINE Alu -88 59 2 4 1074 232 220 0 39 chr9 64147693 64147745 -59928427 - B4A SINE B4 -162 130 81 4 1074 1283 101 21 0 chr9 64147765 64147953 -59928219 + B2_Mm2 SINE B2 1 192 -3 4 1074 512 233 50 0 chr9 64147969 64148089 -59928083 + B1_Mm SINE Alu 1 126 -21 4 1074 483 287 38 30 chr9 64148107 64148240 -59927932 - ID_B1 SINE B4 -13 211 78 4 1074 466 255 212 0 chr9 64148246 64148430 -59927742 - ID_B1 SINE B4 -1 223 1 4 1074 1331 73 11 22 chr9 64148581 64148763 -59927409 + B2_Mm1t SINE B2 3 182 -11 4 1074 260 207 69 0 chr9 64149367 64149425 -59926747 - ID4_ SINE ID -10 73 12 4 1074 423 283 75 0 chr9 64149424 64149544 -59926628 - B1F SINE Alu -15 134 6 4 1074 236 231 43 58 chr9 64149652 64149721 -59926451 - ID4_ SINE ID -14 69 2 4 1074 295 299 18 27 chr9 64149731 64149841 -59926331 - PB1 SINE Alu -2 125 17 4 1074 210 71 0 0 chr9 64150072 64150100 -59926072 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 4 1074 530 226 0 0 chr9 64150198 64150304 -59925868 - B3A SINE B2 -92 106 1 4 1074 649 267 48 18 chr9 64150360 64150528 -59925644 + B3A SINE B2 22 194 -4 4 1074 850 155 0 27 chr9 64150572 64150718 -59925454 + B1_Mur4 SINE Alu 1 142 -8 4 1074 191 36 36 0 chr9 64150718 64150746 -59925426 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1074 499 172 21 31 chr9 64150800 64150896 -59925276 + B1_Mus1 SINE Alu 1 95 -53 5 1074 1413 120 27 58 chr9 64150928 64151185 -59924987 + Lx LINE L1 6380 6628 -26 5 1074 1174 30 0 0 chr9 64151188 64151322 -59924850 + B1_Mus2 SINE Alu 5 138 -9 5 1074 244 207 322 17 chr9 64151639 64151757 -59924415 - RSINE1 SINE B4 -8 157 4 5 1074 247 239 0 56 chr9 64151876 64151947 -59924225 - ID2 SINE ID -16 67 1 5 1074 1003 123 98 0 chr9 64152944 64153107 -59923065 + B2_Mm1t SINE B2 1 179 -14 5 1074 291 109 434 0 chr9 64153142 64153241 -59922931 + B2_Mm2 SINE B2 50 191 -4 5 1074 1244 41 0 0 chr9 64153247 64153393 -59922779 + B1_Mm SINE Alu 2 147 0 5 1074 180 0 0 0 chr9 64153393 64153413 -59922759 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1074 747 192 14 7 chr9 64154371 64154518 -59921654 + B1_Mus1 SINE Alu 1 148 0 5 1074 307 241 0 0 chr9 64154554 64154612 -59921560 + PB1D9 SINE Alu 1 58 -62 5 1074 960 108 0 0 chr9 64154630 64154760 -59921412 + B1_Mus2 SINE Alu 1 130 -17 5 1074 231 114 0 0 chr9 64154770 64154805 -59921367 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 5 1074 281 207 273 11 chr9 64155696 64155784 -59920388 - PB1D9 SINE Alu -9 111 1 5 1074 679 257 135 10 chr9 64155788 64155981 -59920191 - ID_B1 SINE B4 -5 219 3 5 1074 392 197 5 0 chr9 64156337 64156417 -59919755 + B1F SINE Alu 7 89 -61 5 1074 391 290 51 101 chr9 64156488 64156758 -59919414 + B4A SINE B4 15 274 -18 5 1074 1232 35 14 0 chr9 64156805 64156950 -59919222 - B1_Mus2 SINE Alu 0 147 1 5 1074 420 20 0 0 chr9 64156972 64157021 -59919151 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1074 461 331 39 13 chr9 64157022 64157178 -59918994 + RSINE1 SINE B4 4 163 -2 5 1074 638 217 65 7 chr9 64157259 64157398 -59918774 - B1_Mur2 SINE Alu -2 147 1 5 1074 245 243 40 54 chr9 64157417 64157491 -59918681 - PB1D10 SINE Alu -21 96 24 5 1074 518 152 21 14 chr9 64157672 64157788 -59918384 + PB1D9 SINE Alu 2 112 -8 5 1074 198 103 0 0 chr9 64157792 64157821 -59918351 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1074 255 223 164 10 chr9 64158582 64158686 -59917486 - PB1D9 SINE Alu 0 120 1 5 1074 358 202 0 81 chr9 64158745 64158831 -59917341 - B3 SINE B2 -137 79 1 5 1074 461 287 86 29 chr9 64159864 64160004 -59916168 - RSINE1 SINE B4 -2 163 16 5 1074 976 216 32 46 chr9 64160036 64160254 -59915918 - B3 SINE B2 -1 215 1 5 1074 351 60 0 0 chr9 64160379 64160429 -59915743 + (TATG)n Simple_repeat Simple_repeat 2 51 0 5 1074 268 250 21 106 chr9 64160458 64160472 -59915700 + MT2B LTR ERVL 155 160 -441 5 1074 730 142 33 0 chr9 64160472 64160592 -59915580 + B1_Mur1 SINE Alu 2 125 -24 5 1074 441 202 42 25 chr9 64162687 64162806 -59913366 + B3 SINE B2 35 140 -76 5 1074 578 299 56 35 chr9 64162801 64163033 -59913139 - B4 SINE B4 -55 237 1 5 1074 318 353 29 50 chr9 64163625 64163905 -59912267 + L1M5 LINE L1 5516 5789 -335 5 1074 554 204 18 0 chr9 64164225 64164338 -59911834 + PB1D9 SINE Alu 6 120 0 5 1074 260 53 0 26 chr9 64164345 64164384 -59911788 + (GGA)n Simple_repeat Simple_repeat 2 39 0 5 1074 1679 31 0 0 chr9 64164444 64164636 -59911536 + B2_Mm1a SINE B2 2 193 0 5 1074 648 279 68 58 chr9 64164778 64164990 -59911182 + B4A SINE B4 2 230 -62 5 1074 707 211 129 17 chr9 64164990 64165168 -59911004 + B3A SINE B2 1 198 0 5 1074 648 279 68 58 chr9 64165168 64165233 -59910939 + B4A SINE B4 231 282 -10 5 1074 333 0 0 0 chr9 64165253 64165290 -59910882 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1074 312 27 0 0 chr9 64165290 64165326 -59910846 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1074 201 159 0 0 chr9 64165326 64165370 -59910802 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1074 299 325 0 24 chr9 64166034 64166116 -59910056 + B3A SINE B2 81 160 -38 5 1074 31 26 0 0 chr9 64166121 64166159 -59910013 + AT_rich Low_complexity Low_complexity 1 38 0 5 1074 580 111 11 0 chr9 64167217 64167307 -59908865 - B1_Mus1 SINE Alu -57 91 1 5 1074 200 208 0 0 chr9 64167317 64167365 -59908807 + A-rich Low_complexity Low_complexity 1 48 0 5 1074 837 181 7 7 chr9 64167373 64167518 -59908654 + B1_Mus2 SINE Alu 1 145 -2 5 1074 443 236 203 0 chr9 64167666 64167789 -59908383 - B1_Mur2 SINE Alu -1 148 1 5 1074 533 223 66 0 chr9 64167888 64168009 -59908163 - B1_Mur2 SINE Alu -20 129 1 5 1074 321 135 0 0 chr9 64168191 64168243 -59907929 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1074 1045 278 48 0 chr9 64168245 64168515 -59907657 - B4 SINE B4 -2 290 8 5 1074 241 355 57 14 chr9 64168644 64168784 -59907388 - L2 LINE L2 -837 2582 2437 5 1074 457 224 24 79 chr9 64169585 64169711 -59906461 + PB1D9 SINE Alu 2 120 0 5 1074 470 267 148 18 chr9 64169711 64169736 -59906436 + ID_B1 SINE B4 87 247 -45 5 1074 264 270 0 60 chr9 64169737 64169804 -59906368 + tRNA-Ala-GCY_ tRNA tRNA 3 65 -10 5 1074 564 243 70 1 chr9 64169883 64170050 -59906122 + B3 SINE B2 30 206 -10 5 1074 560 167 0 0 chr9 64170072 64170174 -59905998 + L1MA8 LINE L1 6172 6273 -18 5 1074 23 0 0 0 chr9 64170444 64170467 -59905705 + GC_rich Low_complexity Low_complexity 1 23 0 5 1074 668 277 56 9 chr9 64170587 64170787 -59905385 + B4A SINE B4 24 233 -59 5 1074 320 280 134 16 chr9 64170787 64170894 -59905278 + B4A SINE B4 1 123 -169 5 1074 279 0 0 0 chr9 64170894 64170925 -59905247 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1074 320 280 134 16 chr9 64170925 64170944 -59905228 + B4A SINE B4 124 142 -150 5 1074 931 229 79 35 chr9 64171027 64171281 -59904891 + MT2A LTR ERVL 5 269 -264 5 1074 747 208 21 0 chr9 64172050 64172194 -59903978 - B1_Mur3 SINE Alu -2 147 1 5 1074 1503 57 0 10 chr9 64172751 64172945 -59903227 + B2_Mm2 SINE B2 4 195 0 5 1074 531 299 103 42 chr9 64173779 64173992 -59902180 + B4A SINE B4 45 270 -22 5 1074 310 74 37 0 chr9 64174007 64174061 -59902111 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1074 785 257 46 20 chr9 64175151 64175346 -59900826 + ID_B1 SINE B4 1 200 -24 5 1074 426 108 0 0 chr9 64175386 64175451 -59900721 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1074 263 319 178 0 chr9 64175564 64175733 -59900439 + MIR SINE MIR 2 200 -62 5 1074 272 194 75 0 chr9 64175908 64175975 -59900197 + ID4_ SINE ID 2 73 -10 5 1074 366 23 0 0 chr9 64175977 64176020 -59900152 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1074 562 231 230 44 chr9 64176190 64176391 -59899781 - B3 SINE B2 -1 215 1 5 1074 356 157 37 95 chr9 64176408 64176598 -59899574 + CT-rich Low_complexity Low_complexity 2 180 0 5 1074 342 173 32 80 chr9 64176628 64176816 -59899356 + CT-rich Low_complexity Low_complexity 2 180 0 5 1074 219 36 0 0 chr9 64176869 64176897 -59899275 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1074 703 120 135 8 chr9 64176897 64177023 -59899149 - B1_Mus2 SINE Alu -5 142 1 5 1074 600 209 0 0 chr9 64177028 64177133 -59899039 - PB1D7 SINE Alu 0 120 16 5 1074 373 250 194 50 chr9 64177133 64177188 -59898984 - ID_B1 SINE B4 0 224 42 5 1074 528 59 0 0 chr9 64177475 64177543 -59898629 + (TTTCC)n Simple_repeat Simple_repeat 2 69 0 5 1074 393 22 0 0 chr9 64177543 64177589 -59898583 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1074 283 271 0 14 chr9 64178846 64178917 -59897255 + PB1D10 SINE Alu 28 97 -20 5 1074 448 279 98 94 chr9 64178924 64179153 -59897019 + B4A SINE B4 2 239 -53 5 1074 1374 85 16 0 chr9 64179153 64179342 -59896830 + B2_Mm1a SINE B2 2 193 0 5 1074 448 279 98 94 chr9 64179342 64179389 -59896783 + B4A SINE B4 240 279 -13 5 1074 354 191 0 0 chr9 64180265 64180328 -59895844 + L1MB3 LINE L1 5595 5657 -514 5 1074 287 249 49 7 chr9 64180340 64180460 -59895712 + ID4 SINE ID 5 131 -21 5 1074 609 267 188 9 chr9 64180464 64180793 -59895379 + L1MB3 LINE L1 5673 6060 -123 5 1074 705 146 23 61 chr9 64180884 64181015 -59895157 + B1_Mur2 SINE Alu 3 128 -21 5 1074 521 198 53 26 chr9 64181239 64181353 -59894819 - PB1D9 SINE Alu -2 118 2 5 1074 392 231 10 87 chr9 64181386 64181490 -59894682 - RSINE1 SINE B4 0 165 70 5 1074 422 333 47 47 chr9 64181488 64181702 -59894470 + Charlie22a DNA MER1_type 194 407 -84 5 1074 465 180 56 0 chr9 64181812 64181901 -59894271 + ID_B1 SINE B4 129 222 -2 5 1074 416 255 39 0 chr9 64182063 64182165 -59894007 - PB1 SINE Alu -20 107 2 5 1074 234 226 59 143 chr9 64182069 64182188 -59893984 - B4 SINE B4 -114 178 70 5 1074 334 310 23 0 chr9 64182578 64182665 -59893507 - MER2B DNA MER2_type -5 331 243 5 1074 460 259 19 0 chr9 64182670 64182778 -59893394 + B3 SINE B2 2 111 -105 5 1074 355 269 9 28 chr9 64182775 64182882 -59893290 + MTEb LTR MaLR 275 379 0 5 1074 624 245 88 0 chr9 64183002 64183149 -59893023 - RSINE1 SINE B4 -4 161 2 5 1074 593 208 75 0 chr9 64183165 64183327 -59892845 - L1MB5 LINE L1 -285 5889 5703 5 1074 234 0 0 0 chr9 64183449 64183475 -59892697 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1074 502 332 72 0 chr9 64184719 64184912 -59891260 + MER2 DNA MER2_type 54 260 -85 5 1074 606 224 7 53 chr9 64184953 64185104 -59891068 - RSINE1 SINE B4 -19 146 3 5 1074 609 282 66 22 chr9 64185145 64185326 -59890846 - B3 SINE B2 -1 215 27 6 1074 1021 75 3 2 chr9 64185348 64185496 -59890676 - B1_Mus2 SINE Alu 0 150 2 6 1074 211 182 53 35 chr9 64185453 64185510 -59890662 - B3 SINE B2 -157 59 2 6 1074 330 322 23 0 chr9 64185515 64185602 -59890570 + MER2 DNA MER2_type 252 340 -5 5 1074 504 311 44 0 chr9 64185742 64185877 -59890295 - ID_B1 SINE B4 -2 222 82 6 1074 198 0 0 0 chr9 64187249 64187271 -59888901 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6 1074 204 67 0 0 chr9 64189257 64189287 -59886885 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 6 1074 1233 54 0 0 chr9 64189347 64189494 -59886678 + B1_Mus1 SINE Alu 2 148 0 6 1074 261 285 105 53 chr9 64189887 64190039 -59886133 - MIRb SINE MIR -73 195 36 6 1074 276 280 84 0 chr9 64190736 64190843 -59885329 - PB1D10 SINE Alu -1 116 1 6 1074 1199 68 0 0 chr9 64191040 64191186 -59884986 + B1_Mus1 SINE Alu 2 147 -1 6 1074 914 135 7 41 chr9 64191276 64191423 -59884749 + B1_Mur4 SINE Alu 1 142 -8 6 1074 21 0 0 0 chr9 64191441 64191462 -59884710 + AT_rich Low_complexity Low_complexity 1 21 0 6 1074 339 378 108 9 chr9 64191498 64191730 -59884442 - MLT1I LTR MaLR -132 279 25 6 1074 630 358 40 46 chr9 64191963 64192314 -59883858 + MLT1J1 LTR MaLR 20 382 -66 6 1074 202 298 0 0 chr9 64193409 64193456 -59882716 + polypyrimidine Low_complexity Low_complexity 2 48 0 6 1074 296 267 284 0 chr9 64193481 64193597 -59882575 + RSINE1 SINE B4 2 150 -15 6 1074 1414 245 20 29 chr9 64193631 64193976 -59882196 - MTE2b LTR MaLR -37 342 1 6 1074 245 298 36 143 chr9 64194252 64194475 -59881697 + RMER2 LTR ERV1 338 536 -31 6 1074 255 339 37 0 chr9 64194734 64194843 -59881329 - MIR SINE MIR -122 140 28 6 1074 243 88 0 0 chr9 64195381 64195415 -59880757 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1074 346 280 37 18 chr9 64196191 64196300 -59879872 - PB1D7 SINE Alu -1 119 9 6 1074 601 236 27 20 chr9 64196289 64196436 -59879736 - MLT1E3 LTR MaLR -474 150 3 6 1074 889 154 0 39 chr9 64196445 64196600 -59879572 - B1_Mur3 SINE Alu 0 149 1 6 1074 21 0 0 0 chr9 64196609 64196630 -59879542 + AT_rich Low_complexity Low_complexity 1 21 0 6 1074 1107 83 7 0 chr9 64196816 64196961 -59879211 + B1_Mus2 SINE Alu 2 147 0 6 1074 279 0 0 0 chr9 64196961 64196992 -59879180 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1074 555 16 0 0 chr9 64197232 64197296 -59878876 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1074 339 136 197 0 chr9 64197896 64197962 -59878210 + ID4_ SINE ID 2 80 -3 6 1074 645 242 85 15 chr9 64198212 64198413 -59877759 - B3 SINE B2 -1 215 1 6 1074 424 295 57 26 chr9 64198624 64198854 -59877318 - L1MB7 LINE L1 -305 5879 5643 6 1074 541 248 43 28 chr9 64198857 64198998 -59877174 - B1F1 SINE Alu 0 149 7 6 1074 246 297 31 0 chr9 64198943 64199007 -59877165 - B4A SINE B4 -146 146 81 6 1074 812 179 153 22 chr9 64199076 64199259 -59876913 + B3 SINE B2 2 208 -8 6 1074 658 261 36 18 chr9 64199883 64200051 -59876121 + B3A SINE B2 1 171 -27 6 1074 1053 289 24 3 chr9 64200115 64200410 -59875762 + MTE2b LTR MaLR 65 365 -14 6 1074 338 266 96 0 chr9 64200596 64200690 -59875482 - MLT1D LTR MaLR -4 463 361 6 1074 609 268 69 18 chr9 64201003 64201189 -59874983 + B4 SINE B4 4 216 -8 6 1074 382 189 27 13 chr9 64201970 64202045 -59874127 - HAL1-3A_ME LINE L1 -808 2050 1975 6 1074 225 178 0 0 chr9 64202045 64202090 -59874082 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1074 958 234 31 52 chr9 64202105 64202394 -59873778 - B4A SINE B4 -8 284 2 6 1074 225 0 0 0 chr9 64202401 64202426 -59873746 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1074 522 265 58 7 chr9 64202440 64202601 -59873571 - MLT1D LTR MaLR -333 172 5 6 1074 244 323 69 40 chr9 64202647 64202727 -59873445 - YREP_Mm Unknown Unknown -1411 401 317 6 1074 499 329 29 0 chr9 64202727 64202867 -59873305 + B1F SINE Alu 1 144 -5 6 1074 437 212 247 0 chr9 64203012 64203192 -59872980 + B4A SINE B4 2 226 -66 6 1074 811 216 19 146 chr9 64203216 64203428 -59872744 + B3 SINE B2 11 216 0 6 1074 228 210 111 16 chr9 64203408 64203471 -59872701 + B4A SINE B4 210 278 -14 6 1074 246 323 85 81 chr9 64203748 64203984 -59872188 + MER102a DNA MER1_type 92 328 -2 6 1074 404 254 213 27 chr9 64203997 64204147 -59872025 + Tigger16a DNA Tigger 746 923 -10 6 1074 231 309 0 0 chr9 64204620 64204675 -59871497 + PB1D9 SINE Alu 1 55 -65 6 1074 228 291 215 0 chr9 64204625 64204704 -59871468 + ID_B1 SINE B4 87 182 -42 6 1074 423 0 0 0 chr9 64204740 64204787 -59871385 + (CAAG)n Simple_repeat Simple_repeat 1 47 0 6 1074 596 227 69 23 chr9 64204794 64204925 -59871247 + B1_Mur4 SINE Alu 1 137 -13 6 1074 27 0 0 0 chr9 64204936 64204963 -59871209 + AT_rich Low_complexity Low_complexity 1 27 0 6 1074 518 271 54 27 chr9 64204978 64205126 -59871046 + RSINE1 SINE B4 14 165 0 6 1074 670 262 57 38 chr9 64205214 64205424 -59870748 + B4A SINE B4 6 219 -73 6 1074 356 267 81 24 chr9 64205880 64206003 -59870169 - MTEa LTR MaLR -54 325 196 6 1074 235 274 97 0 chr9 64206300 64206362 -59869810 - MTE-int LTR MaLR -124 1456 1389 6 1074 1644 191 91 88 chr9 64206378 64206559 -59869613 + MTD LTR MaLR 12 205 -214 6 1074 599 184 6 209 chr9 64206559 64206731 -59869441 + B1_Mus2 SINE Alu 1 137 -10 6 1074 1644 191 91 88 chr9 64206731 64206956 -59869216 + MTD LTR MaLR 206 419 0 6 1074 198 0 0 0 chr9 64206979 64207001 -59869171 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1074 1045 249 5 0 chr9 64207033 64207254 -59868918 + ID_B1 SINE B4 2 223 -1 6 1074 698 292 118 24 chr9 64207276 64207522 -59868650 - MTE-int LTR MaLR -208 1372 1104 6 1074 513 266 0 46 chr9 64208111 64208241 -59867931 - RSINE1 SINE B4 -30 135 12 6 1074 264 30 0 0 chr9 64208558 64208591 -59867581 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 6 1074 391 181 14 0 chr9 64208613 64208685 -59867487 - B1_Mus2 SINE Alu 0 147 75 6 1074 413 161 411 21 chr9 64208717 64208863 -59867309 - B3A SINE B2 0 216 14 6 1074 220 270 108 31 chr9 64208807 64208872 -59867300 - ID4 SINE ID -9 74 5 6 1074 289 254 0 0 chr9 64208944 64208994 -59867178 - tRNA-Lys-AAG tRNA tRNA -5 71 22 6 1074 857 10 0 0 chr9 64208994 64209098 -59867074 + B1_Mus1 SINE Alu 1 104 -44 6 1074 279 83 0 0 chr9 64209102 64209138 -59867034 - tRNA-Lys-AAG tRNA tRNA -40 36 1 6 1074 252 0 0 0 chr9 64209914 64209942 -59866230 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1074 986 130 0 46 chr9 64209942 64210095 -59866077 - B1_Mus1 SINE Alu 0 148 3 6 1074 184 191 82 41 chr9 64210604 64210653 -59865519 - MIR SINE MIR -68 140 90 6 1074 271 261 114 26 chr9 64210743 64210857 -59865315 - MIRc SINE MIR -39 229 106 6 1074 393 278 32 80 chr9 64211217 64211342 -59864830 + B1F SINE Alu 1 119 -30 6 1074 2137 147 69 3 chr9 64211346 64211708 -59864464 - ORR1B1 LTR MaLR -8 386 1 6 1074 665 120 60 0 chr9 64211754 64211854 -59864318 + B1_Mus1 SINE Alu 4 109 -39 6 1074 309 253 0 12 chr9 64211867 64211951 -59864221 + MLT1H2 LTR MaLR 358 440 -49 6 1074 437 196 262 0 chr9 64212013 64212120 -59864052 + B3 SINE B2 2 136 -80 6 1074 661 200 39 16 chr9 64212162 64212289 -59863883 + B3 SINE B2 1 130 -86 6 1074 312 248 117 58 chr9 64212374 64212511 -59863661 + L2a LINE L2 3278 3422 -4 6 1074 920 247 33 6 chr9 64212598 64212781 -59863391 + ID_B1 SINE B4 22 209 -15 6 1074 258 32 0 0 chr9 64212781 64212812 -59863360 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 1074 1210 49 14 0 chr9 64212884 64213028 -59863144 - B1_Mus1 SINE Alu 0 148 3 6 1074 224 59 0 29 chr9 64214042 64214077 -59862095 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 6 1074 1035 134 0 0 chr9 64214083 64214262 -59861910 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 6 1074 552 306 32 101 chr9 64214343 64214412 -59861760 - B4A SINE B4 -6 286 88 6 1074 739 236 7 7 chr9 64214412 64214557 -59861615 - B1_Mur1 SINE Alu -2 147 3 6 1074 851 218 106 5 chr9 64214558 64214765 -59861407 - B4A SINE B4 -62 230 3 6 1074 202 73 24 24 chr9 64214779 64214821 -59861351 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 6 1074 760 163 6 81 chr9 64214822 64214982 -59861190 - B1_Mur4 SINE Alu 0 150 3 6 1074 369 75 0 0 chr9 64215809 64215862 -59860310 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1074 809 138 0 6 chr9 64215973 64216133 -59860039 + (TCTCC)n Simple_repeat Simple_repeat 4 162 0 6 1074 203 125 25 0 chr9 64216176 64216216 -59859956 + (TTC)n Simple_repeat Simple_repeat 2 42 0 6 1074 631 207 0 17 chr9 64216981 64217099 -59859073 + PB1D7 SINE Alu 5 120 0 6 1074 262 320 62 138 chr9 64216990 64217104 -59859068 + B4A SINE B4 99 263 -29 6 1074 567 90 0 0 chr9 64217104 64217182 -59858990 + B2_Mm2 SINE B2 2 79 -116 6 1074 262 320 62 138 chr9 64217182 64217200 -59858972 + B4A SINE B4 264 292 0 6 1074 579 113 70 20 chr9 64217200 64217551 -59858621 + (CA)n Simple_repeat Simple_repeat 1 368 0 6 1074 225 0 0 0 chr9 64217597 64217622 -59858550 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1074 461 47 16 0 chr9 64217622 64217685 -59858487 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1074 311 252 56 80 chr9 64217841 64217966 -59858206 + L2b LINE L2 3239 3360 -15 6 1074 266 125 21 0 chr9 64218201 64218249 -59857923 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1074 599 235 164 32 chr9 64219028 64219217 -59856955 - ID_B1 SINE B4 -9 215 2 7 1074 483 309 104 26 chr9 64220382 64220575 -59855597 - B4A SINE B4 0 292 85 7 1074 902 58 0 8 chr9 64220587 64220709 -59855463 + (TTCTC)n Simple_repeat Simple_repeat 5 125 0 7 1074 291 114 0 0 chr9 64220710 64220754 -59855418 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 7 1074 1153 56 28 0 chr9 64220769 64220913 -59855259 - B1_Mus1 SINE Alu 0 148 1 7 1074 863 141 0 23 chr9 64220948 64221079 -59855093 + B1_Mur1 SINE Alu 22 149 0 7 1074 490 300 45 91 chr9 64221357 64221378 -59854794 - RSINE1 SINE B4 0 165 154 7 1074 326 75 14 43 chr9 64221378 64221448 -59854724 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1074 490 300 45 91 chr9 64221448 64221580 -59854592 - RSINE1 SINE B4 -12 153 19 7 1074 25 0 0 0 chr9 64221705 64221730 -59854442 + AT_rich Low_complexity Low_complexity 1 25 0 7 1074 1007 236 14 0 chr9 64221815 64222027 -59854145 - B3 SINE B2 0 216 2 7 1074 249 286 0 73 chr9 64222031 64222099 -59854073 - PB1D10 SINE Alu -54 63 1 7 1074 589 304 0 0 chr9 64222099 64222179 -59853993 - ID SINE ID -143 81 2 7 1074 877 236 0 6 chr9 64222449 64222615 -59853557 - B3A SINE B2 -33 165 1 7 1074 329 303 48 61 chr9 64222747 64222895 -59853277 + MIRb SINE MIR 113 261 -1 7 1074 251 330 101 43 chr9 64223204 64223413 -59852759 + L2c LINE L2 3114 3334 -53 7 1074 333 0 0 0 chr9 64223874 64223911 -59852261 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1074 360 0 0 0 chr9 64223911 64223950 -59852222 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1074 727 290 19 82 chr9 64223953 64224220 -59851952 - B4A SINE B4 -41 251 2 7 1074 246 302 56 44 chr9 64224327 64224417 -59851755 + L2b LINE L2 3285 3375 0 7 1074 512 326 67 65 chr9 64224473 64224814 -59851358 - L2c LINE L2 -8 3379 3038 7 1075 762 209 220 0 chr9 64225361 64225543 -59850629 + ID_B1 SINE B4 1 222 -2 7 1075 25 31 0 0 chr9 64225602 64225634 -59850538 + AT_rich Low_complexity Low_complexity 1 32 0 7 1075 222 194 0 0 chr9 64225795 64225857 -59850315 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 7 1075 297 268 22 63 chr9 64225988 64226157 -59850015 + B3 SINE B2 6 211 -5 7 1075 1147 222 5 0 chr9 64226184 64226382 -59849790 + B3 SINE B2 1 199 -17 7 1075 1089 59 0 0 chr9 64227204 64227339 -59848833 - B1_Mus1 SINE Alu 0 148 14 7 1075 203 184 0 93 chr9 64227339 64227370 -59848802 + A-rich Low_complexity Low_complexity 3 32 0 7 1075 1590 37 0 5 chr9 64227370 64227560 -59848612 + B2_Mm1a SINE B2 1 189 -4 7 1075 203 184 0 93 chr9 64227560 64227582 -59848590 + A-rich Low_complexity Low_complexity 33 51 0 7 1075 897 181 0 13 chr9 64227659 64227810 -59848362 + B1_Mur1 SINE Alu 1 149 0 7 1075 678 213 8 38 chr9 64228000 64228080 -59848092 - B1_Mur1 SINE Alu -21 128 52 7 1075 4127 35 43 2 chr9 64228080 64228268 -59847904 - RLTR1B LTR ERV1 0 512 321 7 1075 198 0 0 0 chr9 64228268 64228290 -59847882 + (CTGGGG)n Simple_repeat Simple_repeat 1 22 0 7 1075 4127 35 43 2 chr9 64228290 64228593 -59847579 - RLTR1B LTR ERV1 -192 320 2 7 1075 678 213 8 38 chr9 64228593 64228644 -59847528 - B1_Mur1 SINE Alu -98 51 1 7 1075 364 283 21 21 chr9 64228676 64228770 -59847402 - B1F2 SINE Alu -1 148 55 7 1075 828 182 117 25 chr9 64228991 64229188 -59846984 - URR1B DNA MER1_type -10 215 1 7 1075 236 323 168 0 chr9 64229233 64229309 -59846863 - B2_Mm2 SINE B2 0 195 1 7 1075 484 153 0 66 chr9 64229309 64229400 -59846772 - RSINE1 SINE B4 -79 86 2 7 1075 276 311 111 35 chr9 64229749 64229964 -59846208 + MIRb SINE MIR 7 217 -45 7 1075 742 226 20 14 chr9 64229989 64230010 -59846162 - RSINE1 SINE B4 -14 151 129 7 1075 342 0 0 0 chr9 64230010 64230048 -59846124 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1075 742 226 20 14 chr9 64230048 64230174 -59845998 - RSINE1 SINE B4 -37 128 3 7 1075 699 112 0 0 chr9 64230764 64230871 -59845301 + (TA)n Simple_repeat Simple_repeat 1 107 0 7 1075 1054 167 45 11 chr9 64230889 64231065 -59845107 + ID_B1 SINE B4 11 192 -32 7 1075 375 292 109 23 chr9 64231696 64231871 -59844301 - MIRb SINE MIR -2 266 77 7 1075 286 177 47 31 chr9 64232005 64232069 -59844103 - MER96 DNA hAT -2 173 109 7 1075 185 93 18 53 chr9 64233372 64233429 -59842743 + GA-rich Low_complexity Low_complexity 4 58 0 7 1075 241 240 0 0 chr9 64235338 64235388 -59840784 - MIR SINE MIR -60 148 99 7 1075 713 224 0 45 chr9 64236063 64236217 -59839955 + RSINE1 SINE B4 2 148 -17 7 1075 772 236 177 31 chr9 64236905 64237035 -59839137 + B4 SINE B4 2 158 -134 7 1075 189 74 0 0 chr9 64237035 64237062 -59839110 + (CAGA)n Simple_repeat Simple_repeat 1 27 0 7 1075 772 236 177 31 chr9 64237062 64237185 -59838987 + B4 SINE B4 159 292 0 7 1075 294 326 36 7 chr9 64237295 64237434 -59838738 - MER5A DNA MER1_type -38 151 9 7 1075 643 275 102 20 chr9 64237832 64238029 -59838143 + ID_B1 SINE B4 2 214 -10 7 1075 206 217 0 14 chr9 64238033 64238103 -59838069 + GA-rich Low_complexity Low_complexity 3 71 0 7 1075 388 77 31 0 chr9 64238190 64238255 -59837917 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 7 1075 297 0 0 0 chr9 64238317 64238350 -59837822 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 7 1075 490 288 153 13 chr9 64239065 64239420 -59836752 - MLT1L LTR MaLR -25 585 144 7 1075 1382 96 37 0 chr9 64239505 64239692 -59836480 + B2_Mm2 SINE B2 1 194 -1 7 1075 311 91 0 0 chr9 64239715 64239759 -59836413 + B2_Mm1t SINE B2 39 82 -111 7 1075 266 197 32 16 chr9 64239759 64239821 -59836351 + MIR SINE MIR 88 150 -112 7 1075 915 234 66 0 chr9 64240227 64240424 -59835748 - ID_B1 SINE B4 -10 214 5 7 1075 225 154 0 0 chr9 64240568 64240607 -59835565 + (CAT)n Simple_repeat Simple_repeat 2 40 0 7 1075 549 248 8 0 chr9 64240639 64240756 -59835416 - ID_B1 SINE B4 -7 217 100 7 1075 185 170 20 60 chr9 64240823 64240873 -59835299 + L4 LINE RTE 1423 1470 -559 7 1075 287 223 7 103 chr9 64241290 64241435 -59834737 + CT-rich Low_complexity Low_complexity 3 133 0 7 1075 201 74 0 0 chr9 64241762 64241789 -59834383 + (TGG)n Simple_repeat Simple_repeat 2 28 0 7 1075 681 204 110 19 chr9 64241834 64241989 -59834183 - ID_B1 SINE B4 0 224 56 7 1075 751 209 119 31 chr9 64243877 64244070 -59832102 + ID_B1 SINE B4 2 211 -13 7 1075 198 0 0 0 chr9 64244070 64244092 -59832080 + (CAA)n Simple_repeat Simple_repeat 1 22 0 7 1075 360 273 69 52 chr9 64244159 64244275 -59831897 + PB1D7 SINE Alu 2 119 -1 7 1075 539 279 52 0 chr9 64244424 64244560 -59831612 - ID_B1 SINE B4 0 224 82 7 1075 246 62 0 0 chr9 64245280 64245312 -59830860 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1075 885 227 167 16 chr9 64245773 64245839 -59830333 - B4A SINE B4 0 292 219 7 1075 441 95 0 0 chr9 64245839 64245902 -59830270 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 7 1075 885 227 167 16 chr9 64245902 64246081 -59830091 - B4A SINE B4 -74 218 11 7 1075 485 230 10 10 chr9 64246072 64246173 -59829999 + B4A SINE B4 190 290 -2 7 1075 432 171 0 0 chr9 64246185 64246267 -59829905 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1075 241 333 25 0 chr9 64247117 64247198 -59828974 + MIR SINE MIR 26 108 -154 7 1075 187 121 30 0 chr9 64247469 64247502 -59828670 + MIR SINE MIR 111 144 -118 7 1075 1200 259 11 3 chr9 64247541 64247824 -59828348 - B4A SINE B4 -6 286 2 7 1075 1105 228 18 18 chr9 64248776 64248999 -59827173 - ID_B1 SINE B4 0 224 2 7 1075 782 237 74 49 chr9 64249266 64249502 -59826670 + ID_B1 SINE B4 6 248 -44 7 1075 298 313 19 75 chr9 64249991 64250150 -59826022 + L2 LINE L2 2761 2910 -509 7 1075 213 39 0 0 chr9 64250792 64250818 -59825354 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1075 868 256 54 0 chr9 64250831 64251034 -59825138 - ID_B1 SINE B4 -10 214 1 7 1075 377 379 78 41 chr9 64251816 64252110 -59824062 - MLT1L LTR MaLR -128 482 178 7 1075 1360 197 66 72 chr9 64252135 64252512 -59823660 - MTE2a LTR MaLR 0 379 5 7 1075 387 0 0 0 chr9 64252545 64252588 -59823584 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1075 673 284 21 21 chr9 64252919 64253151 -59823021 - MTE2a LTR MaLR 0 379 166 7 1075 843 150 23 0 chr9 64253163 64253296 -59822876 + B1_Mur4 SINE Alu 5 140 -10 7 1075 414 0 0 0 chr9 64253347 64253393 -59822779 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 7 1075 198 279 92 46 chr9 64253870 64253979 -59822193 - MIRm SINE MIR -92 184 71 7 1075 252 175 0 0 chr9 64254137 64254177 -59821995 - B4 SINE B4 -248 44 5 7 1075 522 0 0 0 chr9 64254184 64254242 -59821930 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1075 439 177 22 39 chr9 64254242 64254424 -59821748 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1075 210 205 39 0 chr9 64254437 64254515 -59821657 + (TG)n Simple_repeat Simple_repeat 1 81 0 7 1075 301 258 30 0 chr9 64254520 64254586 -59821586 - ID4 SINE ID -11 72 5 7 1075 360 277 96 26 chr9 64254597 64254712 -59821460 - PB1 SINE Alu -3 124 2 7 1075 257 337 6 18 chr9 64254940 64255106 -59821066 + (TG)n Simple_repeat Simple_repeat 1 164 0 7 1075 339 292 96 34 chr9 64255484 64255661 -59820511 - B4A SINE B4 -102 190 3 7 1075 667 234 94 5 chr9 64255662 64255885 -59820287 - L1M4 LINE L1 -613 5561 5319 7 1075 360 325 81 54 chr9 64256089 64256385 -59819787 - L2c LINE L2 -5 3382 3079 7 1075 263 206 326 0 chr9 64257904 64257996 -59818176 - MLT1C LTR MaLR -330 137 16 7 1075 903 277 45 3 chr9 64258016 64258306 -59817866 - L1MD LINE L1 -578 5781 5480 7 1075 3635 53 5 2 chr9 64258307 64258742 -59817430 - RLTR10C LTR ERVK 0 436 1 8 1075 43705 14 0 0 chr9 64258742 64263770 -59812402 - MMERVK10C-int LTR ERVK 0 7581 2552 8 1075 360 95 0 0 chr9 64263776 64263839 -59812333 - MMERVK10C-int LTR ERVK -5634 1947 1885 8 1075 312 155 17 0 chr9 64263846 64263904 -59812268 - MMERVK10C-int LTR ERVK -5627 1779 1721 8 1075 603 255 144 67 chr9 64263904 64264276 -59811896 - MMERVK10C-int LTR ERVK -4819 2425 2075 8 1075 719 201 12 34 chr9 64264364 64264640 -59811532 - MMERVK10C-int LTR ERVK -6629 952 729 8 1075 778 126 0 0 chr9 64264638 64264757 -59811415 - MMERVK10C-int LTR ERVK -7238 343 225 8 1075 225 225 0 0 chr9 64264757 64264797 -59811375 - RLTR27 LTR ERVK -34 275 236 8 1075 1594 5 0 0 chr9 64264797 64264981 -59811191 - MMERVK10C-int LTR ERVK -7397 184 1 8 1075 3635 53 5 2 chr9 64264981 64265416 -59810756 - RLTR10C LTR ERVK 0 436 1 8 1075 363 233 231 37 chr9 64265649 64265783 -59810389 - RSINE1 SINE B4 -4 161 2 8 1075 346 139 64 16 chr9 64265835 64265931 -59810241 - B1_Mur1 SINE Alu -3 146 8 8 1075 510 17 0 0 chr9 64265932 64265991 -59810181 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 8 1075 787 165 24 0 chr9 64265996 64266123 -59810049 - B1_Mur4 SINE Alu -20 130 1 8 1075 364 264 43 101 chr9 64265998 64266137 -59810035 - B4 SINE B4 -86 206 76 8 1075 248 187 58 138 chr9 64266092 64266179 -59809993 - MT2B2 LTR ERVL -297 287 208 8 1075 402 302 88 6 chr9 64266183 64266343 -59809829 - L1MD LINE L1 -891 5255 5083 7 1075 194 150 25 0 chr9 64267019 64267059 -59809113 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 8 1075 814 128 23 6 chr9 64267085 64267258 -59808914 + (TG)n Simple_repeat Simple_repeat 1 176 0 8 1075 779 248 19 0 chr9 64267271 64267432 -59808740 - RSINE1 SINE B4 0 165 2 8 1075 473 256 91 32 chr9 64268010 64268157 -59808015 + B4A SINE B4 2 154 -70 8 1075 230 335 122 61 chr9 64268489 64268718 -59807454 - LTR16A LTR ERVL -106 345 103 8 1075 321 291 0 12 chr9 64268896 64268976 -59807196 + ID_B1 SINE B4 137 215 -9 8 1075 213 250 58 0 chr9 64268932 64268984 -59807188 + PB1D10 SINE Alu 62 116 -1 8 1075 252 86 0 0 chr9 64268984 64269019 -59807153 + (CAGC)n Simple_repeat Simple_repeat 4 38 0 8 1075 195 42 0 0 chr9 64269430 64269454 -59806718 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1075 553 305 28 0 chr9 64269487 64269628 -59806544 - RSINE1 SINE B4 -20 145 1 8 1075 648 248 6 60 chr9 64269628 64269785 -59806387 - ID_B1 SINE B4 -75 149 2 8 1075 23 0 0 0 chr9 64269942 64269965 -59806207 + AT_rich Low_complexity Low_complexity 1 23 0 8 1075 282 115 0 0 chr9 64271072 64271124 -59805048 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1075 707 87 10 0 chr9 64271124 64271228 -59804944 + (TG)n Simple_repeat Simple_repeat 2 106 0 8 1075 855 256 54 83 chr9 64271230 64271319 -59804853 - B4 SINE B4 -23 269 182 8 1075 3306 69 2 2 chr9 64271319 64271726 -59804446 + MTB_Mm LTR MaLR 1 407 0 8 1075 855 256 54 83 chr9 64271726 64271913 -59804259 - B4 SINE B4 -111 181 1 8 1075 737 233 114 0 chr9 64273237 64273397 -59802775 + B3 SINE B2 1 167 -49 8 1075 513 32 0 0 chr9 64273397 64273460 -59802712 + (CATA)n Simple_repeat Simple_repeat 4 66 0 8 1075 737 233 114 0 chr9 64273460 64273492 -59802680 + B3 SINE B2 168 214 -2 8 1075 402 188 0 12 chr9 64273861 64273947 -59802225 - MER3 DNA MER1_type -3 206 122 8 1075 655 244 31 5 chr9 64273950 64274144 -59802028 + L1MD LINE L1 2282 2480 -3666 8 1075 519 197 139 16 chr9 64274147 64274276 -59801896 - MTE2b LTR MaLR 0 379 235 8 1075 240 86 0 0 chr9 64274295 64274330 -59801842 + (TATG)n Simple_repeat Simple_repeat 4 38 0 8 1075 1071 190 16 16 chr9 64274332 64274514 -59801658 - B3 SINE B2 -34 182 1 8 1075 829 237 29 0 chr9 64274518 64274691 -59801481 - MTE2b LTR MaLR -201 178 1 8 1075 260 279 93 0 chr9 64274704 64274790 -59801382 - MER3 DNA MER1_type -111 98 5 8 1075 232 261 159 0 chr9 64274796 64274884 -59801288 + L2a LINE L2 3303 3404 -22 8 1075 819 164 64 26 chr9 64275076 64275232 -59800940 - RSINE1 SINE B4 0 165 4 8 1075 453 279 23 62 chr9 64276098 64276228 -59799944 - ORR1E LTR MaLR -232 127 3 8 1075 936 255 11 0 chr9 64276235 64276419 -59799753 + ID_B1 SINE B4 5 190 -34 8 1075 1373 217 60 106 chr9 64276779 64277176 -59798996 + MTEa LTR MaLR 1 379 0 8 1075 4273 189 84 12 chr9 64277237 64278141 -59798031 + RCHARR1 DNA MER1_type 5 973 -1 8 1075 718 268 16 127 chr9 64278162 64278414 -59797758 + ID_B1 SINE B4 1 224 0 8 1075 1101 68 14 0 chr9 64278417 64278563 -59797609 + B1_Mus1 SINE Alu 1 148 0 8 1075 203 0 0 36 chr9 64278566 64278594 -59797578 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1075 248 0 31 0 chr9 64278814 64278846 -59797326 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1075 855 314 47 0 chr9 64278849 64279212 -59796960 - L1M4c LINE L1 -4728 1656 1277 8 1075 28 29 0 0 chr9 64279317 64279352 -59796820 + AT_rich Low_complexity Low_complexity 1 35 0 8 1075 201 196 0 0 chr9 64279368 64279414 -59796758 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 1075 623 299 13 0 chr9 64279416 64279434 -59796738 - RSINE1 SINE B4 -4 161 144 8 1075 297 75 0 0 chr9 64279434 64279474 -59796698 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1075 623 299 13 0 chr9 64279474 64279612 -59796560 - RSINE1 SINE B4 -22 143 4 8 1075 414 252 163 36 chr9 64279791 64279942 -59796230 - L1MDa LINE L1 -4871 1762 1590 8 1075 956 189 44 15 chr9 64279942 64280146 -59796026 - B3 SINE B2 -2 214 5 8 1075 414 252 163 36 chr9 64280146 64280295 -59795877 - L1MDa LINE L1 -5044 1589 1424 8 1075 24 0 0 0 chr9 64280308 64280332 -59795840 + AT_rich Low_complexity Low_complexity 1 24 0 8 1075 180 0 0 0 chr9 64280434 64280454 -59795718 + (CG)n Simple_repeat Simple_repeat 2 21 0 8 1075 288 0 0 0 chr9 64280456 64280488 -59795684 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1075 376 129 0 96 chr9 64280488 64280528 -59795644 + ORR1D1 LTR MaLR 51 89 -285 8 1075 3187 151 183 61 chr9 64280528 64281332 -59794840 + RMER19B LTR ERVK 1 902 0 8 1075 376 129 0 96 chr9 64281332 64281385 -59794787 + ORR1D1 LTR MaLR 90 135 -239 8 1075 538 344 65 0 chr9 64281392 64281622 -59794550 - L1MDa LINE L1 -6300 333 89 8 1075 776 257 14 43 chr9 64281626 64281837 -59794335 - ID_B1 SINE B4 0 224 20 8 1075 223 278 78 22 chr9 64281917 64282024 -59794148 - MIRb SINE MIR -31 237 119 8 1075 321 212 30 0 chr9 64282125 64282191 -59793981 + ID4 SINE ID 2 69 -14 8 1075 888 172 194 0 chr9 64282377 64282557 -59793615 - B3 SINE B2 0 216 2 8 1075 33 25 0 0 chr9 64282573 64282613 -59793559 + AT_rich Low_complexity Low_complexity 1 40 0 8 1075 296 270 48 39 chr9 64282623 64282727 -59793445 - RSINE1 SINE B4 -33 132 28 8 1075 766 211 0 0 chr9 64282735 64282882 -59793290 - B1_Mur2 SINE Alu -2 147 1 8 1075 335 329 54 30 chr9 64283094 64283260 -59792912 - L1MC5 LINE L1 -284 7677 7508 8 1075 345 100 0 0 chr9 64283310 64283360 -59792812 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 8 1075 435 256 166 14 chr9 64283362 64283501 -59792671 - RSINE1 SINE B4 -4 161 2 8 1075 838 258 27 14 chr9 64283577 64283797 -59792375 - ID_B1 SINE B4 0 224 2 8 1075 1172 225 32 7 chr9 64284047 64284329 -59791843 + B4 SINE B4 4 292 0 8 1075 269 318 33 13 chr9 64285265 64285418 -59790754 + (TG)n Simple_repeat Simple_repeat 1 156 0 8 1075 739 195 7 32 chr9 64285489 64285643 -59790529 - ID_B1 SINE B4 -2 222 73 8 1075 309 330 119 20 chr9 64286248 64286302 -59789870 - CYRA11_Mm Unknown Y-chromosome -232 385 193 8 1075 721 135 121 0 chr9 64286302 64286443 -59789729 + URR1B DNA MER1_type 68 225 0 8 1075 21 0 0 0 chr9 64286946 64286967 -59789205 + AT_rich Low_complexity Low_complexity 1 21 0 8 1075 441 0 0 0 chr9 64287007 64287056 -59789116 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1075 631 247 143 6 chr9 64287481 64287656 -59788516 + ID_B1 SINE B4 9 207 -17 8 1075 180 0 0 0 chr9 64287701 64287721 -59788451 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1075 906 245 52 86 chr9 64287905 64288195 -59787977 + B4 SINE B4 8 287 -5 8 1075 1019 52 0 0 chr9 64288877 64289012 -59787160 - B1_Mus1 SINE Alu 0 148 14 8 1075 340 271 197 0 chr9 64289053 64289175 -59786997 + RSINE1 SINE B4 12 157 -8 8 1075 236 366 88 88 chr9 64289446 64289695 -59786477 + Charlie19a DNA Charlie 138 386 0 8 1075 628 101 10 12 chr9 64289863 64289982 -59786190 + ORR1A0 LTR MaLR 139 275 -71 8 1075 234 188 15 59 chr9 64289978 64290046 -59786126 + MLT1B LTR MaLR 13 77 -390 8 1075 1058 158 68 0 chr9 64290076 64290266 -59785906 + MTC LTR MaLR 219 421 0 8 1075 417 276 99 40 chr9 64290316 64290373 -59785799 + MLT1B LTR MaLR 231 296 -94 8 1075 185 0 40 0 chr9 64290373 64290398 -59785774 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 8 1075 417 276 99 40 chr9 64290398 64290491 -59785681 + MLT1B LTR MaLR 297 389 -1 8 1075 248 314 0 87 chr9 64290597 64290612 -59785560 - PB1D10 SINE Alu -2 115 11 8 1075 385 290 0 0 chr9 64290612 64290712 -59785460 - ID_B1 SINE B4 -33 191 92 8 1075 315 0 0 0 chr9 64290833 64290868 -59785304 + (TTCTG)n Simple_repeat Simple_repeat 3 37 0 8 1075 790 185 14 7 chr9 64290877 64291024 -59785148 - B1_Mur2 SINE Alu -1 148 1 8 1075 30 0 0 0 chr9 64291569 64291599 -59784573 + AT_rich Low_complexity Low_complexity 1 30 0 8 1075 214 333 28 47 chr9 64292549 64292656 -59783516 + MIRc SINE MIR 37 141 -127 8 1075 729 254 39 19 chr9 64292789 64292994 -59783178 + ID_B1 SINE B4 8 216 -8 8 1075 969 223 48 0 chr9 64293006 64293212 -59782960 + B3 SINE B2 1 216 0 8 1075 277 301 166 0 chr9 64294702 64294895 -59781277 - MIRb SINE MIR 0 268 44 8 1075 30 27 0 0 chr9 64295324 64295361 -59780811 + AT_rich Low_complexity Low_complexity 1 37 0 8 1075 477 0 0 0 chr9 64295931 64295984 -59780188 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1075 243 0 0 0 chr9 64295984 64296010 -59780162 + (GA)n Simple_repeat Simple_repeat 1 27 0 8 1075 406 268 111 32 chr9 64296259 64296448 -59779724 - MIR SINE MIR -6 256 53 8 1075 1002 203 4 40 chr9 64296465 64296691 -59779481 + ID_B1 SINE B4 6 223 -1 8 1075 231 114 0 0 chr9 64296759 64296794 -59779378 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1075 273 242 0 0 chr9 64296843 64296905 -59779267 + MIR SINE MIR 79 140 -122 8 1075 241 47 47 0 chr9 64298218 64298261 -59777911 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 8 1075 1083 78 0 0 chr9 64298261 64298402 -59777770 - B1_Mus2 SINE Alu -5 142 2 8 1075 363 23 0 0 chr9 64299629 64299673 -59776499 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1075 378 0 0 0 chr9 64299673 64299714 -59776458 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1075 297 220 55 121 chr9 64300234 64300403 -59775769 - L1ME2 LINE L1 -159 6012 5855 9 1075 780 262 52 0 chr9 64300531 64300722 -59775450 + ID_B1 SINE B4 24 224 0 9 1075 279 0 0 0 chr9 64301064 64301095 -59775077 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 9 1075 773 123 115 0 chr9 64301100 64301222 -59774950 - B1_Mus1 SINE Alu -12 136 1 9 1075 586 243 7 46 chr9 64302524 64302675 -59773497 - ID_B1 SINE B4 0 224 80 9 1075 296 194 36 0 chr9 64302677 64302747 -59773425 + PB1D10 SINE Alu 40 117 -3 9 1075 291 313 70 56 chr9 64302772 64302914 -59773258 + B1F1 SINE Alu 1 144 -5 9 1075 451 259 8 65 chr9 64302791 64302915 -59773257 + ID_B1 SINE B4 105 221 -3 9 1075 495 87 0 0 chr9 64303187 64303256 -59772916 + (TG)n Simple_repeat Simple_repeat 1 69 0 9 1075 432 267 0 19 chr9 64304389 64304492 -59771680 - RSINE1 SINE B4 -62 103 3 9 1075 405 0 0 0 chr9 64304832 64304877 -59771295 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1075 577 114 19 0 chr9 64305050 64305155 -59771017 + (GA)n Simple_repeat Simple_repeat 2 108 0 9 1075 784 250 204 20 chr9 64306804 64306896 -59769276 - B4 SINE B4 0 292 204 9 1075 3020 71 10 0 chr9 64306896 64307292 -59768880 - MTB LTR MaLR 0 400 1 9 1075 784 250 204 20 chr9 64307292 64307444 -59768728 - B4 SINE B4 -89 203 3 9 1075 285 336 142 0 chr9 64307889 64308023 -59768149 + MER3 DNA MER1_type 32 184 -25 9 1075 252 41 39 39 chr9 64308031 64308082 -59768090 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 9 1075 329 303 72 12 chr9 64308992 64309159 -59767013 - LTR33 LTR ERVL -19 496 320 9 1075 216 0 0 0 chr9 64310118 64310142 -59766030 + (CCCCAG)n Simple_repeat Simple_repeat 1 24 0 9 1075 384 238 20 0 chr9 64310761 64310908 -59765264 + (CAGC)n Simple_repeat Simple_repeat 2 151 0 9 1075 197 65 0 31 chr9 64311253 64311285 -59764887 + (AGGGGG)n Simple_repeat Simple_repeat 3 33 0 9 1075 405 204 96 10 chr9 64311544 64311648 -59764524 - RSINE1 SINE B4 0 165 53 9 1075 766 269 145 8 chr9 64312509 64312764 -59763408 + B4 SINE B4 1 290 -2 9 1075 281 285 211 0 chr9 64312855 64312978 -59763194 + RSINE1 SINE B4 1 149 -16 9 1075 220 346 76 30 chr9 64313339 64313470 -59762702 - MIRc SINE MIR -115 153 17 9 1075 953 163 0 6 chr9 64314842 64315021 -59761151 + CT-rich Low_complexity Low_complexity 1 178 0 9 1075 186 133 0 0 chr9 64315021 64315051 -59761121 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 9 1075 862 152 21 0 chr9 64315051 64315196 -59760976 - B1_Mur2 SINE Alu -1 148 1 9 1075 297 0 0 0 chr9 64315206 64315239 -59760933 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1075 296 83 0 20 chr9 64315329 64315378 -59760794 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 9 1075 600 285 32 19 chr9 64315423 64315577 -59760595 + RSINE1 SINE B4 4 159 -6 9 1075 480 290 66 24 chr9 64315810 64315976 -59760196 + B4A SINE B4 3 175 -117 9 1075 346 278 17 17 chr9 64316086 64316203 -59759969 + PB1D10 SINE Alu 1 117 0 9 1075 204 211 0 0 chr9 64316926 64316964 -59759208 + CT-rich Low_complexity Low_complexity 2 39 0 9 1075 755 251 20 73 chr9 64316964 64317047 -59759125 - ID_B1 SINE B4 -47 245 163 9 1075 1882 157 114 83 chr9 64317047 64317555 -59758617 - RLTR24 LTR ERV1 -4 525 2 9 1075 755 247 18 71 chr9 64317555 64317728 -59758444 - ID_B1 SINE B4 -119 173 1 9 1075 199 315 165 22 chr9 64317728 64317819 -59758353 + L2c LINE L2 3279 3382 -5 9 1075 807 258 62 0 chr9 64319959 64320168 -59756004 - ID_B1 SINE B4 0 224 3 9 1075 483 18 0 0 chr9 64321220 64321276 -59754896 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1075 351 0 0 0 chr9 64322215 64322254 -59753918 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1075 203 385 51 8 chr9 64324529 64324647 -59751525 - MIR SINE MIR -63 199 77 9 1075 513 301 162 16 chr9 64324735 64324968 -59751204 - B4A SINE B4 0 292 33 9 1075 3138 46 5 8 chr9 64324968 64325365 -59750807 - MTA_Mm LTR MaLR 0 396 1 9 1075 513 301 162 16 chr9 64325365 64325384 -59750788 - B4A SINE B4 -260 32 4 9 1075 323 298 21 11 chr9 64326311 64326406 -59749766 - MER2 DNA MER2_type -2 343 248 9 1075 615 144 22 15 chr9 64326433 64326497 -59749675 + polypyrimidine Low_complexity Low_complexity 73 135 0 9 1075 1212 106 0 0 chr9 64326497 64326676 -59749496 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 9 1075 615 144 22 15 chr9 64326676 64326745 -59749427 + polypyrimidine Low_complexity Low_complexity 1 72 0 9 1075 353 259 35 0 chr9 64326748 64326833 -59749339 + C-rich Low_complexity Low_complexity 1 88 0 9 1075 1051 68 0 14 chr9 64326847 64326995 -59749177 - B1_Mm SINE Alu 0 147 2 9 1075 258 312 18 35 chr9 64327005 64327118 -59749054 - PB1D10 SINE Alu -6 111 1 9 1075 435 309 68 0 chr9 64327119 64327281 -59748891 - MER2 DNA MER2_type -122 223 51 9 1075 1928 203 13 8 chr9 64327655 64328027 -59748145 - MTEa LTR MaLR -1 378 5 9 1075 1029 195 30 10 chr9 64328718 64328915 -59747257 + ID_B1 SINE B4 4 204 -20 9 1075 363 96 0 0 chr9 64328920 64328972 -59747200 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 9 1075 225 108 0 0 chr9 64330472 64330509 -59745663 + (TTG)n Simple_repeat Simple_repeat 2 38 0 9 1075 1121 71 0 0 chr9 64330509 64330650 -59745522 - B1_Mus1 SINE Alu -7 141 1 9 1075 1196 237 89 20 chr9 64330675 64331024 -59745148 + MTEb LTR MaLR 4 376 -3 9 1075 673 195 0 0 chr9 64332566 64332684 -59743488 - RSINE1 SINE B4 -45 120 3 9 1075 245 167 24 0 chr9 64332688 64332730 -59743442 - MIRm SINE MIR -119 157 115 9 1075 972 283 38 28 chr9 64333398 64333685 -59742487 + B4 SINE B4 1 290 -2 9 1075 270 0 0 0 chr9 64333747 64333777 -59742395 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1075 628 282 16 60 chr9 64334586 64334771 -59741401 + ID_B1 SINE B4 40 216 -8 9 1075 514 195 272 0 chr9 64335861 64336030 -59740142 - ID_B1 SINE B4 -9 215 1 9 1075 26 74 0 0 chr9 64337273 64337327 -59738845 + AT_rich Low_complexity Low_complexity 1 54 0 9 1075 336 235 0 0 chr9 64337413 64337481 -59738691 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1075 616 225 0 17 chr9 64337481 64337653 -59738519 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 9 1075 506 270 6 0 chr9 64337626 64337804 -59738368 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1075 486 200 254 135 chr9 64337833 64337967 -59738205 - B4 SINE B4 0 292 108 9 1075 1088 114 0 0 chr9 64337967 64338107 -59738065 + B1_Mur4 SINE Alu 1 140 -10 9 1075 486 0 0 0 chr9 64338107 64338161 -59738011 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 9 1075 486 200 254 135 chr9 64338161 64338285 -59737887 - B4 SINE B4 -185 107 3 9 1075 700 268 111 44 chr9 64338320 64338590 -59737582 - B4A SINE B4 -3 289 2 9 1075 495 305 19 0 chr9 64338663 64338817 -59737355 + L1_Mur2 LINE L1 5096 5252 -625 9 1075 420 283 64 70 chr9 64338823 64338979 -59737193 + RSINE1 SINE B4 1 155 -10 9 1075 28 29 0 0 chr9 64339026 64339061 -59737111 + AT_rich Low_complexity Low_complexity 1 35 0 9 1075 317 302 10 14 chr9 64339120 64339246 -59736926 - MIRb SINE MIR -123 153 31 9 1075 738 0 0 0 chr9 64339900 64339982 -59736190 + (TTCTC)n Simple_repeat Simple_repeat 4 85 0 9 1075 360 279 66 83 chr9 64339991 64340112 -59736060 - PB1 SINE Alu -2 125 7 9 1075 829 226 50 6 chr9 64340784 64340966 -59735206 + ID_B1 SINE B4 3 192 -32 9 1075 324 0 0 0 chr9 64340979 64341015 -59735157 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 9 1075 207 100 0 0 chr9 64342173 64342203 -59733969 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 9 1075 853 271 125 16 chr9 64343279 64343623 -59732549 + MTD LTR MaLR 8 419 0 9 1075 432 297 33 20 chr9 64343721 64343872 -59732300 + ID_B1 SINE B4 4 156 -68 9 1075 728 126 22 22 chr9 64344328 64344506 -59731666 + (TCTCTG)n Simple_repeat Simple_repeat 1 178 0 9 1075 805 267 78 0 chr9 64344522 64344728 -59731444 - ID_B1 SINE B4 -1 223 2 9 1075 401 220 0 9 chr9 64346396 64346506 -59729666 + (TG)n Simple_repeat Simple_repeat 1 109 0 9 1075 606 281 166 17 chr9 64346536 64346771 -59729401 - B4A SINE B4 -14 278 9 9 1075 275 280 13 0 chr9 64346811 64346886 -59729286 - ID4 SINE ID -5 78 3 9 1075 436 259 17 25 chr9 64347236 64347355 -59728817 - PB1D9 SINE Alu -2 118 1 9 1075 318 294 101 22 chr9 64348220 64348359 -59727813 - Charlie23a DNA MER1_type -9 330 181 9 1075 1208 285 58 8 chr9 64349697 64350058 -59726114 - MTEa LTR MaLR 0 379 1 9 1075 213 290 115 70 chr9 64350796 64350996 -59725176 + MIRc SINE MIR 20 228 -40 9 1075 190 338 54 0 chr9 64352339 64352413 -59723759 - MIRc SINE MIR -123 145 68 9 1075 204 269 0 0 chr9 64353220 64353272 -59722900 + MIR SINE MIR 124 175 -87 9 1075 1021 261 18 40 chr9 64353282 64353557 -59722615 + B4 SINE B4 18 286 -6 9 1075 314 281 7 99 chr9 64353515 64353657 -59722515 - MTE2a LTR MaLR -250 129 1 9 1075 429 312 72 64 chr9 64354097 64354333 -59721839 + LTR16C LTR ERVL 152 389 -100 9 1075 403 204 22 11 chr9 64355638 64355727 -59720445 + MIRc SINE MIR 65 154 -114 9 1076 222 143 61 0 chr9 64356926 64357003 -59719169 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 9 1076 664 303 30 4 chr9 64357929 64358154 -59718018 - MIR SINE MIR -21 241 6 9 1076 1113 214 99 48 chr9 64358387 64358721 -59717451 - MT2A LTR ERVL -2 531 181 9 1076 453 36 0 0 chr9 64358722 64358777 -59717395 + (TC)n Simple_repeat Simple_repeat 1 55 0 9 1076 413 36 0 18 chr9 64358797 64358853 -59717319 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1076 270 204 0 0 chr9 64359117 64359171 -59717001 + MIRc SINE MIR 70 123 -145 1 1076 313 304 0 0 chr9 64359575 64359667 -59716505 - MLT1I LTR MaLR -1 410 319 1 1076 354 356 93 67 chr9 64360116 64360502 -59715670 - LTR16D1 LTR ERVL -185 490 60 1 1076 332 230 99 0 chr9 64360615 64360716 -59715456 - ID4 SINE ID -36 116 6 1 1076 228 303 38 83 chr9 64360822 64360955 -59715217 - ID_B1 SINE B4 -84 140 14 1 1076 314 45 28 56 chr9 64361012 64361083 -59715089 + (TTTTTG)n Simple_repeat Simple_repeat 2 70 0 1 1076 543 300 58 12 chr9 64361208 64361220 -59714952 - B3A SINE B2 -16 182 172 1 1076 447 59 71 0 chr9 64361220 64361305 -59714867 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 1 1076 543 300 58 12 chr9 64361305 64361464 -59714708 - B3A SINE B2 -27 171 3 1 1076 335 333 133 47 chr9 64361464 64361944 -59714228 - L1MEg LINE L1 -4911 1173 651 1 1076 1189 237 86 8 chr9 64362102 64362370 -59713802 - B4A SINE B4 -2 290 2 1 1076 280 42 83 0 chr9 64362544 64362592 -59713580 + (TTTTC)n Simple_repeat Simple_repeat 5 56 0 1 1076 460 236 68 94 chr9 64362596 64362788 -59713384 - L1MB5 LINE L1 -7 6167 5981 1 1076 912 276 56 56 chr9 64363571 64363859 -59712313 + B4A SINE B4 5 292 0 1 1076 279 0 0 0 chr9 64363992 64364023 -59712149 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1076 207 0 0 0 chr9 64365234 64365257 -59710915 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1076 923 241 10 10 chr9 64365264 64365473 -59710699 + ID_B1 SINE B4 1 209 -15 1 1076 249 174 110 55 chr9 64365473 64365546 -59710626 + B1F SINE Alu 73 149 0 1 1076 866 277 24 0 chr9 64366447 64366653 -59709519 - B3 SINE B2 -5 211 1 1 1076 270 347 33 87 chr9 64366880 64367063 -59709109 + MIR SINE MIR 67 239 -23 1 1076 219 23 0 85 chr9 64367485 64367532 -59708640 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 1 1076 779 261 58 72 chr9 64367628 64367839 -59708333 + B4A SINE B4 22 229 -63 1 1076 425 331 65 7 chr9 64367839 64367994 -59708178 + RSINE1 SINE B4 2 165 0 1 1076 317 247 0 13 chr9 64368007 64368085 -59708087 + B4A SINE B4 216 292 0 1 1076 345 47 0 0 chr9 64368088 64368131 -59708041 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1076 510 17 0 0 chr9 64368131 64368189 -59707983 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1076 896 295 9 0 chr9 64369859 64370069 -59706103 + ID_B1 SINE B4 2 213 -11 1 1076 942 231 76 9 chr9 64371993 64372197 -59703975 + ID_B1 SINE B4 1 219 -5 1 1076 192 40 0 0 chr9 64372197 64372222 -59703950 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1 1076 678 313 60 12 chr9 64373510 64373762 -59702410 - B4A SINE B4 0 292 29 1 1076 180 0 0 0 chr9 64373795 64373815 -59702357 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1076 294 380 16 0 chr9 64373870 64373991 -59702181 - L2b LINE L2 0 3375 3253 1 1076 283 288 27 14 chr9 64374416 64374490 -59701682 - ID4 SINE ID -5 78 4 1 1076 865 252 107 64 chr9 64374836 64374904 -59701268 + B4 SINE B4 1 75 -217 1 1076 1973 125 165 0 chr9 64374904 64375232 -59700940 + ORR1C2 LTR MaLR 1 382 -2 1 1076 865 252 107 64 chr9 64375232 64375443 -59700729 + B4 SINE B4 76 292 0 1 1076 932 258 70 37 chr9 64376264 64376534 -59699638 - B4A SINE B4 -12 280 2 1 1076 235 273 18 0 chr9 64377338 64377393 -59698779 + MIRc SINE MIR 115 170 -98 1 1076 825 257 45 0 chr9 64377453 64377655 -59698517 + ID_B1 SINE B4 2 212 -12 1 1076 250 277 10 41 chr9 64377684 64377782 -59698390 + ID_B1 SINE B4 128 222 -2 1 1076 212 316 13 0 chr9 64377866 64377945 -59698227 + CT-rich Low_complexity Low_complexity 3 82 0 1 1076 244 376 0 0 chr9 64379670 64379763 -59696409 + L3 LINE CR1 4224 4316 -173 1 1076 207 312 72 41 chr9 64379937 64380034 -59696138 - L2b LINE L2 -163 3212 3113 1 1076 324 0 0 0 chr9 64380299 64380335 -59695837 + (TATG)n Simple_repeat Simple_repeat 3 38 0 1 1076 911 191 169 4 chr9 64380363 64380531 -59695641 - B4A SINE B4 -4 288 83 1 1076 233 29 0 29 chr9 64380531 64380566 -59695606 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1076 911 191 169 4 chr9 64380566 64380633 -59695539 - B4A SINE B4 -210 82 15 1 1076 207 0 0 0 chr9 64381047 64381070 -59695102 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1076 786 225 26 20 chr9 64381805 64382000 -59694172 + ID_B1 SINE B4 2 197 -27 1 1076 242 238 0 16 chr9 64382002 64382066 -59694106 + (CAAA)n Simple_repeat Simple_repeat 3 65 0 1 1076 1482 151 51 14 chr9 64383006 64383281 -59692891 + RMER19B LTR ERVK 158 442 -460 1 1076 347 23 0 0 chr9 64383269 64383312 -59692860 + RMER19B LTR ERVK 607 649 -253 1 1076 207 255 21 0 chr9 64384377 64384424 -59691748 + C-rich Low_complexity Low_complexity 3 50 0 1 1076 954 219 88 12 chr9 64384465 64384714 -59691458 - B4 SINE B4 0 292 25 1 1076 236 352 0 0 chr9 64385087 64385158 -59691014 + ID4_ SINE ID 11 81 -2 1 1076 796 294 10 0 chr9 64385103 64385297 -59690875 + ID_B1 SINE B4 28 223 -1 1 1076 329 266 64 0 chr9 64385422 64385531 -59690641 - LTR33 LTR ERVL -369 146 31 1 1076 458 325 25 0 chr9 64386207 64386370 -59689802 - MER58A DNA MER1_type -23 201 35 1 1076 2971 116 7 2 chr9 64386987 64387402 -59688770 - MTC LTR MaLR -3 418 2 1 1076 225 0 0 0 chr9 64387634 64387659 -59688513 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1076 234 0 0 0 chr9 64387659 64387684 -59688488 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1076 411 21 0 0 chr9 64387684 64387731 -59688441 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1076 589 272 81 0 chr9 64387868 64388004 -59688168 - RSINE1 SINE B4 -17 148 2 1 1076 195 179 51 0 chr9 64388012 64388051 -59688121 - MIR SINE MIR -71 191 151 1 1076 773 92 28 0 chr9 64388223 64388365 -59687807 + (TG)n Simple_repeat Simple_repeat 1 146 0 1 1076 974 177 56 25 chr9 64391558 64391755 -59684417 - B3 SINE B2 -13 203 1 1 1076 226 228 18 0 chr9 64391782 64391839 -59684333 + CT-rich Low_complexity Low_complexity 1 58 0 1 1076 449 297 0 26 chr9 64391841 64391955 -59684217 - PB1D10 SINE Alu -5 112 2 1 1076 605 224 30 7 chr9 64391981 64392116 -59684056 - ID_B1 SINE B4 -23 201 64 1 1076 243 0 0 0 chr9 64392708 64392735 -59683437 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1076 1725 97 0 0 chr9 64393472 64393710 -59682462 - Lx4A LINE L1 -1065 5993 5756 1 1076 2547 156 5 7 chr9 64393710 64394143 -59682029 + Lx4A LINE L1 6627 7058 0 1 1076 283 331 30 30 chr9 64395160 64395294 -59680878 - ORR1E LTR MaLR -6 373 240 1 1076 234 0 0 0 chr9 64395313 64395339 -59680833 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 1076 309 336 35 0 chr9 64395394 64395510 -59680662 - ORR1E LTR MaLR -237 122 3 1 1076 196 371 142 7 chr9 64395598 64395739 -59680433 - L3 LINE CR1 -101 4388 4229 1 1076 314 333 83 25 chr9 64396141 64396298 -59679874 - MIR SINE MIR -36 226 61 1 1076 335 301 70 52 chr9 64396876 64397048 -59679124 - L1ME4a LINE L1 -230 5894 5720 1 1076 546 250 165 0 chr9 64397118 64397306 -59678866 + ID_B1 SINE B4 2 220 -4 1 1076 501 299 6 82 chr9 64397633 64397804 -59678368 + RSINE1 SINE B4 2 159 -6 1 1076 682 208 16 0 chr9 64397862 64397987 -59678185 + ID_B1 SINE B4 92 218 -6 1 1076 717 34 0 0 chr9 64397987 64398075 -59678097 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 1076 542 288 58 0 chr9 64399441 64399646 -59676526 + ID_B1 SINE B4 4 220 -4 1 1076 290 298 79 42 chr9 64399768 64399957 -59676215 - L1MB3 LINE L1 -7 6176 5981 1 1076 645 117 39 0 chr9 64400038 64400141 -59676031 - PB1D9 SINE Alu -13 107 1 1 1076 309 265 0 46 chr9 64400336 64400423 -59675749 + ID4_ SINE ID 1 83 0 1 1076 254 283 47 0 chr9 64400469 64400575 -59675597 + L1M3 LINE L1 5339 5449 -734 1 1076 741 251 23 6 chr9 64400583 64400646 -59675526 + ID SINE ID 15 80 -144 1 1076 336 287 24 32 chr9 64400646 64400772 -59675400 + B1_Mm SINE Alu 1 125 -22 1 1076 581 299 87 19 chr9 64402040 64402306 -59673866 - B4A SINE B4 -6 286 3 1 1076 356 173 87 27 chr9 64402501 64402601 -59673571 - PB1D10 SINE Alu 0 117 15 1 1076 202 191 48 0 chr9 64404136 64404178 -59671994 - MIRb SINE MIR -174 94 51 1 1076 373 182 0 0 chr9 64404397 64404463 -59671709 - MTEa LTR MaLR -2 377 312 1 1076 1014 72 0 48 chr9 64404464 64404610 -59671562 + B1_Mus1 SINE Alu 1 139 -9 1 1076 1142 97 6 0 chr9 64404610 64404785 -59671387 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 1 1076 857 102 7 35 chr9 64404796 64404938 -59671234 + B1_Mus1 SINE Alu 10 147 -1 1 1076 907 299 104 30 chr9 64404932 64405260 -59670912 - MTEa LTR MaLR -27 352 1 1 1076 344 382 6 0 chr9 64406786 64406964 -59669208 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1 1076 265 277 0 0 chr9 64406925 64406990 -59669182 + (CCCA)n Simple_repeat Simple_repeat 2 66 0 1 1076 507 149 0 0 chr9 64406990 64407097 -59669075 + (CATA)n Simple_repeat Simple_repeat 1 107 0 1 1076 286 279 93 0 chr9 64407821 64407907 -59668265 - RSINE1 SINE B4 -5 160 67 1 1076 252 250 67 0 chr9 64407920 64407980 -59668192 + RSINE1 SINE B4 82 145 -20 1 1076 279 0 0 0 chr9 64408001 64408032 -59668140 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1076 294 280 46 18 chr9 64408241 64408350 -59667822 - Charlie9 DNA MER1_type -2635 122 11 1 1076 467 329 48 39 chr9 64408386 64408743 -59667429 + L1ME3B LINE L1 5708 6067 -173 1 1076 1021 285 11 7 chr9 64409130 64409416 -59666756 + B4A SINE B4 2 288 -4 1 1076 224 170 19 0 chr9 64409431 64409484 -59666688 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1076 200 266 0 30 chr9 64409534 64409600 -59666572 - L2b LINE L2 -211 3164 3101 1 1076 25 0 0 0 chr9 64409898 64409923 -59666249 + GC_rich Low_complexity Low_complexity 1 25 0 1 1076 411 68 0 0 chr9 64410666 64410725 -59665447 + (TGAG)n Simple_repeat Simple_repeat 4 62 0 1 1076 2054 139 8 59 chr9 64410784 64411174 -59664998 - ORR1D1 LTR MaLR 0 374 5 1 1076 593 248 0 54 chr9 64411175 64411324 -59664848 - B3A SINE B2 -57 141 1 1 1076 781 240 90 5 chr9 64411324 64411522 -59664650 - B4 SINE B4 -63 229 15 1 1076 189 291 12 48 chr9 64411740 64411823 -59664349 - L2a LINE L2 -268 3158 3079 1 1076 263 179 0 15 chr9 64412977 64413045 -59663127 + GA-rich Low_complexity Low_complexity 1 67 0 1 1076 306 294 173 12 chr9 64413154 64413316 -59662856 - MIRb SINE MIR -17 251 64 1 1076 436 248 8 42 chr9 64413386 64413504 -59662668 + PB1D7 SINE Alu 5 118 -2 1 1076 874 178 4 14 chr9 64413602 64413877 -59662295 + CT-rich Low_complexity Low_complexity 1 272 0 1 1076 207 0 0 0 chr9 64414507 64414530 -59661642 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1076 459 0 0 0 chr9 64414530 64414580 -59661592 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1076 304 250 86 11 chr9 64414607 64414700 -59661472 + MIR SINE MIR 24 123 -85 1 1076 264 196 0 0 chr9 64414773 64414819 -59661353 + MER20 DNA MER1_type 30 75 -144 1 1076 1228 75 23 17 chr9 64415035 64415211 -59660961 + B2_Mm2 SINE B2 1 177 -18 1 1076 788 100 8 0 chr9 64415211 64415331 -59660841 + (GA)n Simple_repeat Simple_repeat 2 122 0 1 1076 484 283 62 8 chr9 64415339 64415467 -59660705 + RSINE1 SINE B4 2 136 -29 1 1076 840 258 10 34 chr9 64415515 64415720 -59660452 + ID_B1 SINE B4 16 215 -9 1 1076 668 74 0 10 chr9 64415721 64415817 -59660355 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 1 1076 938 150 0 0 chr9 64415833 64415980 -59660192 + B1_Mur4 SINE Alu 3 149 -1 1 1076 255 238 0 0 chr9 64415981 64416044 -59660128 + A-rich Low_complexity Low_complexity 1 63 0 1 1076 272 333 37 37 chr9 64416685 64416819 -59659353 + MIR3 SINE MIR 10 143 -65 1 1076 352 365 8 21 chr9 64416978 64417146 -59659026 - MIR SINE MIR -6 262 96 1 1076 1095 161 34 14 chr9 64417570 64417778 -59658394 - B3 SINE B2 -3 213 2 1 1076 432 168 214 34 chr9 64417823 64417940 -59658232 + B1_Mur1 SINE Alu 9 146 -3 1 1076 198 0 0 0 chr9 64418096 64418118 -59658054 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1076 780 301 66 0 chr9 64419595 64419867 -59656305 + B4 SINE B4 1 290 -2 1 1076 261 0 0 0 chr9 64419883 64419912 -59656260 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1076 308 271 91 57 chr9 64420058 64420206 -59655966 + MIR SINE MIR 16 174 -102 1 1076 228 302 94 8 chr9 64420591 64420708 -59655464 + L2a LINE L2 2730 2856 -563 1 1076 497 256 61 28 chr9 64420981 64421162 -59655010 - MTE2b LTR MaLR 0 379 193 1 1076 744 228 146 5 chr9 64421189 64421401 -59654771 - MTE2b LTR MaLR -137 242 1 1 1076 245 285 131 56 chr9 64421439 64421599 -59654573 + L2a LINE L2 2932 3103 -323 1 1076 416 317 93 10 chr9 64421607 64421811 -59654361 - MLT1E1 LTR MaLR -2 652 432 1 1076 474 276 84 13 chr9 64422150 64422207 -59653965 - RMER30 DNA MER1_type -36 166 111 1 1076 447 68 0 0 chr9 64422207 64422266 -59653906 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1076 474 276 84 13 chr9 64422266 64422362 -59653810 - RMER30 DNA MER1_type -92 110 2 1 1076 261 345 68 34 chr9 64422397 64422574 -59653598 + L2a LINE L2 3183 3365 -61 1 1076 502 251 207 97 chr9 64422619 64422928 -59653244 - ORR1E LTR MaLR -13 346 4 1 1076 225 189 22 11 chr9 64425505 64425596 -59650576 + GA-rich Low_complexity Low_complexity 2 93 0 1 1076 237 310 124 32 chr9 64425853 64426103 -59650069 - Lx8 LINE L1 -11 7462 7190 1 1076 278 234 202 26 chr9 64427166 64427280 -59648892 - MIRc SINE MIR -94 174 41 1 1076 185 184 0 39 chr9 64427689 64427740 -59648432 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 1076 814 264 73 15 chr9 64427754 64428015 -59648157 - B4 SINE B4 -15 277 2 1 1076 232 161 28 0 chr9 64428028 64428082 -59648090 - MIRc SINE MIR -113 155 95 1 1076 957 221 55 0 chr9 64429337 64429536 -59646636 + ID_B1 SINE B4 3 212 -12 1 1076 483 48 0 0 chr9 64429617 64429679 -59646493 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 1 1076 1356 236 65 25 chr9 64430910 64431206 -59644966 + ORR1D2 LTR MaLR 1 319 -51 1 1076 990 116 181 78 chr9 64431206 64431297 -59644875 + URR1A DNA MER1_type 1 113 -113 1 1076 693 162 49 42 chr9 64431297 64431439 -59644733 + B1_Mur4 SINE Alu 2 144 -6 1 1076 340 20 41 0 chr9 64431442 64431491 -59644681 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 1 1076 990 116 181 78 chr9 64431491 64431600 -59644572 + URR1A DNA MER1_type 114 226 0 1 1076 1356 236 65 25 chr9 64431600 64431659 -59644513 + ORR1D2 LTR MaLR 320 370 0 1 1076 400 348 0 0 chr9 64431662 64431797 -59644375 + (TCCA)n Simple_repeat Simple_repeat 1 135 0 1 1076 270 301 110 31 chr9 64431859 64431986 -59644186 - MER5B DNA MER1_type -35 143 7 1 1076 233 273 0 0 chr9 64432930 64433007 -59643165 + (AGATG)n Simple_repeat Simple_repeat 1 77 0 1 1076 185 245 0 36 chr9 64433144 64433199 -59642973 - L2 LINE L2 -1885 1534 1482 1 1076 339 25 0 0 chr9 64433284 64433324 -59642848 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 1 1076 546 229 0 0 chr9 64433324 64433429 -59642743 - PB1D9 SINE Alu -13 107 3 1 1076 677 263 13 6 chr9 64433489 64433646 -59642526 - RSINE1 SINE B4 -2 163 6 1 1076 372 119 15 0 chr9 64433999 64434066 -59642106 - PB1D7 SINE Alu -48 72 5 1 1076 713 253 165 20 chr9 64434947 64435201 -59640971 - B4 SINE B4 0 292 2 1 1076 243 0 0 0 chr9 64435213 64435240 -59640932 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1076 858 157 177 5 chr9 64435519 64435711 -59640461 - URR1A DNA MER1_type 0 226 2 1 1076 195 277 0 0 chr9 64436299 64436346 -59639826 - MIRm SINE MIR -124 152 106 1 1076 208 341 33 0 chr9 64436378 64436469 -59639703 - MIRb SINE MIR -165 103 10 1 1076 931 230 25 5 chr9 64436581 64436778 -59639394 + ID_B1 SINE B4 2 202 -22 1 1076 634 132 0 9 chr9 64437004 64437111 -59639061 - B1_Mus2 SINE Alu 0 147 42 1 1076 277 158 0 95 chr9 64437200 64437263 -59638909 - B1_Mus1 SINE Alu -89 59 3 1 1076 422 165 10 0 chr9 64437459 64437562 -59638610 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 1 1076 217 188 0 24 chr9 64438158 64438240 -59637932 + C-rich Low_complexity Low_complexity 1 80 0 1 1076 515 90 13 0 chr9 64439086 64439164 -59637008 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1076 309 231 13 13 chr9 64439469 64439548 -59636624 + ID_B1 SINE B4 92 170 -54 1 1076 258 292 52 10 chr9 64439548 64439566 -59636606 + PB1D10 SINE Alu 11 111 -6 1 1076 259 222 31 16 chr9 64439569 64439633 -59636539 + GA-rich Low_complexity Low_complexity 4 68 0 1 1076 618 254 0 0 chr9 64439817 64439951 -59636221 - RSINE1 SINE B4 -30 135 2 1 1076 617 244 135 10 chr9 64439951 64440155 -59636017 - B4A SINE B4 -62 230 1 1 1076 263 279 103 11 chr9 64440158 64440245 -59635927 + MLT1C LTR MaLR 82 176 -291 1 1076 297 385 30 0 chr9 64440860 64440995 -59635177 - MER91A DNA Tip100 -57 139 1 1 1076 256 307 40 13 chr9 64442589 64442665 -59633507 + MIRc SINE MIR 101 178 -90 1 1076 382 192 41 0 chr9 64442864 64442937 -59633235 - ID4 SINE ID -5 78 3 1 1076 187 256 0 0 chr9 64442942 64442981 -59633191 - MIR SINE MIR -58 150 112 1 1076 201 308 0 0 chr9 64443591 64443643 -59632529 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1076 841 278 87 4 chr9 64443653 64443895 -59632277 - B4A SINE B4 -18 274 13 1 1076 243 337 19 19 chr9 64443972 64444078 -59632094 - MIR SINE MIR -71 191 86 1 1076 475 291 22 52 chr9 64444746 64444880 -59631292 + RSINE1 SINE B4 32 161 -4 1 1076 323 281 124 0 chr9 64444906 64444995 -59631177 + PB1D9 SINE Alu 3 102 -18 1 1076 780 194 17 91 chr9 64445812 64445988 -59630184 + B3A SINE B2 2 164 -34 1 1076 336 48 0 0 chr9 64445989 64446031 -59630141 + (CATA)n Simple_repeat Simple_repeat 1 42 0 1 1076 423 0 0 0 chr9 64446051 64446098 -59630074 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1076 242 308 97 7 chr9 64446531 64446675 -59629497 - MIRb SINE MIR -111 157 1 1 1076 323 315 55 18 chr9 64447571 64447681 -59628491 + L1MD3 LINE L1 6555 6668 -1327 1 1076 294 229 0 0 chr9 64447681 64447751 -59628421 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1076 412 211 95 0 chr9 64448418 64448513 -59627659 - MER94 DNA AcHobo -22 112 9 1 1076 937 315 62 21 chr9 64449076 64449595 -59626577 - L1ME4a LINE L1 -207 5917 5378 1 1076 1205 41 0 0 chr9 64449746 64449893 -59626279 + B1_Mm SINE Alu 1 147 0 1 1076 424 266 0 0 chr9 64449914 64450008 -59626164 - B4A SINE B4 -65 227 134 1 1076 681 201 234 6 chr9 64450035 64450210 -59625962 - B3 SINE B2 0 216 2 1 1076 642 234 8 0 chr9 64450234 64450362 -59625810 - B4A SINE B4 -163 129 1 1 1076 247 238 16 0 chr9 64450392 64450455 -59625717 - L2c LINE L2 -52 3335 3272 1 1076 275 241 67 22 chr9 64450770 64450859 -59625313 + MER5A1 DNA MER1_type 66 158 -8 1 1076 298 293 76 28 chr9 64450885 64451029 -59625143 + MER5B DNA MER1_type 17 167 -11 1 1076 239 281 0 118 chr9 64451131 64451224 -59624948 + ID_B1 SINE B4 80 161 -63 1 1076 819 146 13 6 chr9 64451239 64451398 -59624774 + GA-rich Low_complexity Low_complexity 3 162 0 1 1076 637 238 186 16 chr9 64451404 64451592 -59624580 + ID_B1 SINE B4 5 224 0 1 1076 230 219 0 0 chr9 64451592 64451633 -59624539 + polypurine Low_complexity Low_complexity 2 42 0 1 1076 1012 211 29 0 chr9 64452658 64452866 -59623306 + ID_B1 SINE B4 8 221 -3 1 1076 1092 178 210 50 chr9 64454636 64454955 -59621217 + ORR1D1 LTR MaLR 1 370 -4 1 1076 241 293 38 57 chr9 64455773 64455878 -59620294 - MIR3 SINE MIR -18 190 88 1 1076 792 286 9 18 chr9 64456428 64456649 -59619523 - ID_B1 SINE B4 -5 219 1 1 1076 319 299 75 0 chr9 64456764 64456898 -59619274 - MLT1K LTR MaLR -371 224 81 1 1076 538 250 106 0 chr9 64457150 64457282 -59618890 + RSINE1 SINE B4 3 148 -17 1 1076 369 0 0 0 chr9 64458043 64458084 -59618088 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1076 338 42 21 0 chr9 64458167 64458215 -59617957 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1 1076 593 226 8 39 chr9 64458232 64458361 -59617811 - RSINE1 SINE B4 -38 127 3 1 1076 282 39 78 0 chr9 64458365 64458416 -59617756 + (TTTTC)n Simple_repeat Simple_repeat 2 56 0 1 1076 982 213 5 10 chr9 64458416 64458620 -59617552 - B4 SINE B4 -69 223 21 1 1076 180 111 0 0 chr9 64458833 64458860 -59617312 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1076 525 291 31 19 chr9 64459943 64460104 -59616068 + RSINE1 SINE B4 3 165 0 1 1076 256 200 33 0 chr9 64460806 64460866 -59615306 - MIR SINE MIR -21 241 180 1 1076 32 0 0 0 chr9 64461064 64461096 -59615076 + AT_rich Low_complexity Low_complexity 1 32 0 1 1076 188 55 0 127 chr9 64461164 64461227 -59614945 + A-rich Low_complexity Low_complexity 2 56 0 1 1076 234 62 0 0 chr9 64461327 64461359 -59614813 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 1 1076 758 225 46 36 chr9 64461572 64461766 -59614406 + B3A SINE B2 1 196 -2 1 1076 857 228 20 5 chr9 64462153 64462356 -59613816 - ID_B1 SINE B4 -17 207 2 1 1076 199 292 31 0 chr9 64462511 64462576 -59613596 - MIRb SINE MIR -149 119 53 1 1076 280 356 8 34 chr9 64462760 64462879 -59613293 + MER63A DNA AcHobo 41 156 -54 1 1076 350 242 39 48 chr9 64463084 64463188 -59612984 + MLT1C LTR MaLR 51 153 -314 1 1076 203 379 83 8 chr9 64463904 64464037 -59612135 + MIR3 SINE MIR 45 187 -21 1 1076 719 240 99 5 chr9 64464766 64464967 -59611205 - ID_B1 SINE B4 0 224 5 1 1076 458 261 43 0 chr9 64465364 64465479 -59610693 + ID_B1 SINE B4 104 223 -1 1 1076 297 289 44 0 chr9 64465483 64465573 -59610599 - MIR SINE MIR -79 183 90 1 1076 256 159 0 0 chr9 64466095 64466139 -59610033 + ID4 SINE ID 2 45 -38 1 1076 195 42 0 0 chr9 64466141 64466165 -59610007 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 1 1076 693 229 64 43 chr9 64466475 64466662 -59609510 + ID_B1 SINE B4 2 192 -32 1 1076 623 241 7 0 chr9 64466818 64466959 -59609213 + B1_Mur2 SINE Alu 1 142 -7 1 1076 951 9 0 0 chr9 64466959 64467067 -59609105 + (GGAGA)n Simple_repeat Simple_repeat 2 109 0 1 1076 196 100 50 0 chr9 64467067 64467107 -59609065 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 1 1076 204 259 35 0 chr9 64467742 64467800 -59608372 + MIR SINE MIR 87 146 -62 1 1076 463 269 68 14 chr9 64467812 64467959 -59608213 + RSINE1 SINE B4 11 165 0 1 1076 244 368 63 42 chr9 64467959 64467997 -59608175 + B3 SINE B2 7 195 -21 1 1076 243 224 0 0 chr9 64468464 64468513 -59607659 + B1F2 SINE Alu 3 51 -98 1 1076 616 263 129 0 chr9 64468646 64468832 -59607340 - B4 SINE B4 -18 274 65 1 1076 321 260 0 0 chr9 64469088 64469161 -59607011 + ID4 SINE ID 2 74 -9 1 1076 417 95 0 0 chr9 64469175 64469238 -59606934 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 1 1076 462 88 0 0 chr9 64469732 64469800 -59606372 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1076 507 33 0 0 chr9 64470016 64470077 -59606095 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1076 369 164 0 0 chr9 64470182 64470255 -59605917 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1076 197 128 21 0 chr9 64470822 64470869 -59605303 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 1076 860 276 14 5 chr9 64470875 64471090 -59605082 - ID_B1 SINE B4 -2 222 6 1 1076 280 284 25 0 chr9 64471114 64471195 -59604977 - MIR SINE MIR -77 131 49 1 1076 947 184 126 0 chr9 64471582 64471789 -59604383 - B4A SINE B4 -14 278 46 1 1076 1164 231 35 28 chr9 64472174 64472463 -59603709 + B4 SINE B4 1 291 -1 1 1076 181 233 47 0 chr9 64472695 64472738 -59603434 - L3 LINE CR1 -106 4383 4339 1 1076 645 229 63 46 chr9 64472880 64473054 -59603118 + ID_B1 SINE B4 45 221 -3 1 1076 249 295 25 25 chr9 64473189 64473269 -59602903 - B1_Mus2 SINE Alu -67 80 1 1 1076 274 268 0 0 chr9 64473316 64473372 -59602800 - ID SINE ID -164 60 5 1 1076 180 0 0 0 chr9 64473858 64473878 -59602294 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1076 291 301 0 22 chr9 64474610 64474711 -59601461 - L2a LINE L2 0 3426 3277 1 1076 410 94 16 0 chr9 64475140 64475204 -59600968 + (GGA)n Simple_repeat Simple_repeat 1 65 0 1 1076 239 303 69 29 chr9 64475264 64475275 -59600897 + B1F2 SINE Alu 36 141 -8 1 1076 427 198 44 0 chr9 64475275 64475366 -59600806 + ID_B1 SINE B4 122 216 -8 1 1076 572 258 68 0 chr9 64475397 64475529 -59600643 + RSINE1 SINE B4 25 165 0 1 1076 465 50 0 0 chr9 64477252 64477312 -59598860 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1076 214 186 0 0 chr9 64478420 64478463 -59597709 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 1 1076 1051 269 0 83 chr9 64478474 64478543 -59597629 - B4A SINE B4 -17 275 226 1 1076 665 255 6 19 chr9 64478543 64478703 -59597469 - RSINE1 SINE B4 -6 159 2 1 1076 1051 269 0 83 chr9 64478703 64478933 -59597239 - B4A SINE B4 -67 225 1 1 1076 486 0 0 0 chr9 64478941 64478995 -59597177 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 1076 1000 269 36 65 chr9 64479460 64479979 -59596193 - RLTR11B LTR ERVK -6 522 1 1 1076 208 260 0 0 chr9 64479997 64480047 -59596125 + L2b LINE L2 3324 3373 -2 1 1076 335 283 143 19 chr9 64480581 64480790 -59595382 + L1MB7 LINE L1 5842 6076 -104 1 1076 616 219 23 0 chr9 64481006 64481134 -59595038 - ID_B1 SINE B4 -23 201 71 1 1076 421 211 31 21 chr9 64481242 64481339 -59594833 + MIRc SINE MIR 61 158 -110 1 1076 491 359 20 10 chr9 64481831 64482031 -59594141 - Tigger15a DNA TcMar -9 706 505 1 1076 514 267 230 13 chr9 64482144 64482197 -59593975 - B4A SINE B4 0 292 231 1 1076 713 230 6 24 chr9 64482197 64482362 -59593810 - RSINE1 SINE B4 -1 164 3 1 1076 514 267 230 13 chr9 64482362 64482547 -59593625 - B4A SINE B4 -62 230 2 1 1076 295 289 67 108 chr9 64482816 64483010 -59593162 - RMER15 LTR ERVL -43 532 347 1 1076 244 341 76 15 chr9 64483151 64483282 -59592890 - Lx8 LINE L1 -310 7163 7025 1 1076 228 250 186 20 chr9 64483432 64483534 -59592638 + PB1D7 SINE Alu 2 120 0 1 1076 633 316 30 30 chr9 64484087 64484319 -59591853 + B4A SINE B4 59 290 -2 1 1076 203 176 0 0 chr9 64484325 64484359 -59591813 + (CATA)n Simple_repeat Simple_repeat 3 36 0 1 1076 290 344 48 18 chr9 64484371 64484537 -59591635 - MamRep137 DNA TcMar? 0 444 274 1 1076 257 364 17 43 chr9 64484957 64485072 -59591100 - MER81 DNA AcHobo -1 113 2 1 1076 934 169 0 53 chr9 64487191 64487397 -59588775 + B2_Mm2 SINE B2 1 195 0 1 1077 182 238 48 0 chr9 64488081 64488123 -59588049 + MIRc SINE MIR 85 128 -140 1 1077 933 208 84 0 chr9 64488134 64488336 -59587836 + ID_B1 SINE B4 2 220 -4 1 1077 303 28 0 0 chr9 64488347 64488383 -59587789 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 1 1077 181 148 0 0 chr9 64489242 64489269 -59586903 + MER5A DNA MER1_type 137 163 -26 1 1077 187 333 64 11 chr9 64489545 64489639 -59586533 - MIR3 SINE MIR -104 104 6 1 1077 191 146 24 0 chr9 64489642 64489683 -59586489 + CT-rich Low_complexity Low_complexity 1 42 0 1 1077 573 154 22 0 chr9 64489714 64489773 -59586399 + polypyrimidine Low_complexity Low_complexity 81 139 0 1 1077 207 0 0 0 chr9 64489773 64489796 -59586376 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1077 573 154 22 0 chr9 64489796 64489872 -59586300 + polypyrimidine Low_complexity Low_complexity 2 80 0 1 1077 281 281 54 109 chr9 64491226 64491410 -59584762 - MLT1B LTR MaLR -12 378 205 1 1077 501 202 35 9 chr9 64491382 64491495 -59584677 - MTD LTR MaLR -201 220 105 1 1077 775 123 81 20 chr9 64491495 64491644 -59584528 + B2_Mm2 SINE B2 1 158 -37 1 1077 207 0 0 0 chr9 64491644 64491667 -59584505 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 1 1077 679 216 0 0 chr9 64491680 64491805 -59584367 - MTD LTR MaLR -293 126 2 1 1077 254 354 20 20 chr9 64491806 64491907 -59584265 - B4A SINE B4 -190 102 2 1 1077 230 236 83 0 chr9 64491919 64491991 -59584181 - MLT1B LTR MaLR -246 144 67 1 1077 554 221 23 8 chr9 64492984 64493116 -59583056 + RSINE1 SINE B4 3 136 -29 1 1077 28 29 0 0 chr9 64493118 64493153 -59583019 + AT_rich Low_complexity Low_complexity 1 35 0 1 1077 305 125 31 0 chr9 64493571 64493635 -59582537 + CT-rich Low_complexity Low_complexity 3 68 0 1 1077 369 43 0 0 chr9 64493765 64493812 -59582360 + (TCC)n Simple_repeat Simple_repeat 3 49 0 1 1077 626 171 0 19 chr9 64493820 64493927 -59582245 - PB1D9 SINE Alu -7 113 9 1 1077 346 287 47 47 chr9 64493837 64493943 -59582229 - B4 SINE B4 -105 187 82 1 1077 528 211 262 44 chr9 64493955 64493974 -59582198 - ID_B1 SINE B4 0 224 210 1 1077 207 0 0 0 chr9 64493974 64493997 -59582175 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1077 528 211 262 44 chr9 64493997 64494160 -59582012 - ID_B1 SINE B4 -15 209 2 1 1077 241 354 0 0 chr9 64494394 64494473 -59581699 - HAL1 LINE L1 -909 1598 1520 1 1077 582 250 60 0 chr9 64494592 64494776 -59581396 + B3A SINE B2 3 197 -1 1 1077 1050 88 7 0 chr9 64494834 64494981 -59581191 - B1_Mus1 SINE Alu 0 148 1 1 1077 204 347 0 13 chr9 64495048 64495124 -59581048 + CT-rich Low_complexity Low_complexity 4 78 0 1 1077 299 272 233 100 chr9 64496479 64496888 -59579284 + RLTR18 LTR ERVK 29 482 -134 1 1077 2282 161 39 15 chr9 64498440 64498507 -59577665 - MTC LTR MaLR -1 420 355 1 1077 198 0 0 0 chr9 64498507 64498529 -59577643 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1077 2282 161 39 15 chr9 64498529 64498871 -59577301 - MTC LTR MaLR -67 354 2 1 1077 265 200 60 0 chr9 64498895 64498945 -59577227 + ID4_ SINE ID 6 58 -25 1 1077 235 308 91 33 chr9 64498945 64499016 -59577156 + B4 SINE B4 6 133 -159 1 1077 392 278 18 27 chr9 64498994 64499105 -59577067 + ID_B1 SINE B4 64 173 -51 1 1077 357 254 54 54 chr9 64499121 64499250 -59576922 + RSINE1 SINE B4 2 130 -35 1 1077 1314 191 227 30 chr9 64499552 64499988 -59576184 - RMER4B LTR ERVK -15 570 49 1 1077 426 216 9 97 chr9 64500121 64500234 -59575938 + PB1D7 SINE Alu 18 120 0 1 1077 482 243 29 0 chr9 64500285 64500388 -59575784 + ID_B1 SINE B4 114 219 -5 2 1077 422 240 86 9 chr9 64500538 64500643 -59575529 - B1F SINE Alu -36 113 1 3 1077 202 246 32 16 chr9 64502372 64502434 -59573738 - L2b LINE L2 -216 3159 3097 4 1077 462 283 55 8 chr9 64503109 64503237 -59572935 - MER20 DNA MER1_type -48 171 38 5 1077 1256 97 23 0 chr9 64503430 64503605 -59572567 + B2_Mm1t SINE B2 1 179 -14 6 1077 333 97 316 17 chr9 64503612 64503726 -59572446 + B2_Mm2 SINE B2 47 194 -1 7 1077 703 210 221 0 chr9 64503744 64503925 -59572247 + ID_B1 SINE B4 4 224 0 8 1077 1061 83 89 6 chr9 64503927 64504085 -59572087 + B2_Mm2 SINE B2 1 171 -24 9 1077 1267 35 0 0 chr9 64504088 64504232 -59571940 + B1_Mus2 SINE Alu 1 144 -3 1 1077 214 218 0 37 chr9 64504293 64504374 -59571798 + GA-rich Low_complexity Low_complexity 1 78 0 1 1077 2510 138 48 136 chr9 64504484 64504696 -59571476 - RLTR24 LTR ERV1 0 529 314 1 1077 2923 64 19 0 chr9 64504696 64505073 -59571099 + L1Md_F2 LINE L1 6199 6582 0 1 1077 2510 138 48 136 chr9 64505073 64505440 -59570732 - RLTR24 LTR ERV1 -216 313 1 1 1077 364 151 25 88 chr9 64506403 64506483 -59569689 - ORR1C2 LTR MaLR -1 383 309 1 1077 725 147 85 8 chr9 64506492 64506622 -59569550 - B1_Mus1 SINE Alu -6 142 3 1 1077 295 256 140 52 chr9 64506622 64506758 -59569414 + MIRb SINE MIR 92 239 -29 1 1077 658 232 44 17 chr9 64506760 64506940 -59569232 - L1M5 LINE L1 -364 5760 5576 1 1077 233 322 90 19 chr9 64507179 64507334 -59568838 - L2a LINE L2 0 3426 3261 1 1077 695 233 45 143 chr9 64507346 64507492 -59568680 + ID_B1 SINE B4 2 154 -70 1 1077 604 283 46 0 chr9 64507492 64507644 -59568528 + RSINE1 SINE B4 2 160 -5 2 1077 695 233 45 143 chr9 64507644 64507742 -59568430 + ID_B1 SINE B4 155 222 -2 1 1077 538 191 113 53 chr9 64508651 64508784 -59567388 - B1_Mur2 SINE Alu -2 147 7 2 1077 606 28 0 0 chr9 64508791 64508863 -59567309 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 1077 303 301 65 208 chr9 64508863 64508982 -59567190 - ID SINE ID -142 82 1 2 1077 394 349 106 3 chr9 64509188 64509470 -59566702 - L1M5 LINE L1 -458 5666 5356 2 1077 223 286 130 0 chr9 64509643 64509720 -59566452 + MIRc SINE MIR 62 148 -120 2 1077 387 286 76 28 chr9 64509960 64510104 -59566068 - ID_B1 SINE B4 -4 220 70 2 1077 696 250 52 29 chr9 64510499 64510709 -59565463 + B3 SINE B2 1 215 -1 2 1077 986 261 33 0 chr9 64510968 64511179 -59564993 - ID_B1 SINE B4 -5 219 2 2 1077 3932 150 158 12 chr9 64511223 64511772 -59564400 - RMER19B LTR ERVK -12 890 235 2 1077 240 35 0 0 chr9 64511772 64511801 -59564371 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1077 3932 150 158 12 chr9 64511801 64512027 -59564145 - RMER19B LTR ERVK -668 234 2 2 1077 263 237 17 17 chr9 64512850 64512910 -59563262 + MIR SINE MIR 78 137 -71 3 1077 1446 158 71 42 chr9 64512926 64513237 -59562935 - RMER10B LTR ERVL -78 320 1 3 1077 248 217 0 0 chr9 64513310 64513356 -59562816 - ID SINE ID -178 46 1 2 1077 295 351 60 20 chr9 64513691 64513842 -59562330 - MIRb SINE MIR -43 225 69 3 1077 222 37 0 0 chr9 64514732 64514759 -59561413 + (GGAGA)n Simple_repeat Simple_repeat 1 27 0 3 1077 22 35 0 0 chr9 64515316 64515345 -59560827 + AT_rich Low_complexity Low_complexity 1 29 0 3 1077 491 252 0 70 chr9 64515370 64515485 -59560687 - RSINE1 SINE B4 -57 108 2 3 1077 420 290 59 54 chr9 64515587 64515773 -59560399 + MIR SINE MIR 21 207 -55 3 1077 434 264 0 3 chr9 64517011 64517315 -59558857 + (CA)n Simple_repeat Simple_repeat 1 302 0 3 1077 360 0 0 0 chr9 64517433 64517473 -59558699 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1077 294 164 216 14 chr9 64517473 64517547 -59558625 - RSINE1 SINE B4 -45 120 32 4 1077 1206 179 10 0 chr9 64517598 64517794 -59558378 + ID_B1 SINE B4 1 198 -26 4 1077 351 252 67 45 chr9 64518183 64518356 -59557816 - MIR3 SINE MIR -23 185 15 4 1077 299 311 70 64 chr9 64518882 64519054 -59557118 - MIRc SINE MIR -65 203 31 4 1077 460 287 0 40 chr9 64519610 64519963 -59556209 + C-rich Low_complexity Low_complexity 1 338 0 4 1077 272 173 39 0 chr9 64520116 64520168 -59556004 + PB1D10 SINE Alu 7 60 -57 4 1077 640 236 197 0 chr9 64520547 64520725 -59555447 + ID_B1 SINE B4 4 216 -8 4 1077 403 263 40 48 chr9 64521252 64521376 -59554796 + B4A SINE B4 168 290 -2 4 1077 228 254 14 29 chr9 64521387 64521456 -59554716 + (CATA)n Simple_repeat Simple_repeat 1 68 0 4 1077 183 80 0 0 chr9 64522745 64522770 -59553402 + (CAT)n Simple_repeat Simple_repeat 1 25 0 4 1077 554 237 66 15 chr9 64522997 64523134 -59553038 - RSINE1 SINE B4 -4 161 18 5 1077 574 210 28 28 chr9 64523169 64523311 -59552861 - B1F1 SINE Alu -5 144 3 5 1077 677 179 175 53 chr9 64523620 64523809 -59552363 - B3 SINE B2 0 216 5 5 1077 306 238 0 60 chr9 64523894 64523961 -59552211 - ID4 SINE ID -15 68 6 5 1077 968 152 0 7 chr9 64523983 64524129 -59552043 - B1_Mus1 SINE Alu -2 146 2 5 1077 1004 106 7 21 chr9 64524203 64524348 -59551824 + B1_Mus1 SINE Alu 6 148 0 5 1077 623 275 31 36 chr9 64524353 64524549 -59551623 - B3A SINE B2 -2 196 2 5 1077 302 306 23 82 chr9 64524595 64524619 -59551553 + YREP_Mm Unknown Unknown 154 177 -1635 5 1077 2193 164 2 52 chr9 64524619 64525019 -59551153 - RLTR14 LTR ERV1 0 382 3 5 1077 302 306 23 82 chr9 64525019 64525165 -59551007 + YREP_Mm Unknown Unknown 178 313 -1499 5 1077 901 155 101 0 chr9 64525044 64525192 -59550980 - ID_B1 SINE B4 -12 212 50 5 1077 180 302 63 56 chr9 64525787 64525913 -59550259 + MIRb SINE MIR 77 203 -65 6 1077 504 0 0 0 chr9 64525934 64525990 -59550182 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1077 270 0 0 0 chr9 64525990 64526019 -59550153 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1077 591 238 41 41 chr9 64526091 64526262 -59549910 + ID_B1 SINE B4 43 213 -11 6 1077 394 272 314 34 chr9 64526464 64526762 -59549410 - MLT1E2 LTR MaLR -175 452 63 6 1077 597 171 26 43 chr9 64526762 64526878 -59549294 + PB1D9 SINE Alu 2 115 -5 6 1077 394 272 314 34 chr9 64526878 64526929 -59549243 - MLT1E2 LTR MaLR -565 62 5 6 1077 368 235 49 12 chr9 64527430 64527512 -59548660 + B1F1 SINE Alu 13 97 -52 6 1077 564 228 51 14 chr9 64527784 64527801 -59548371 + B4 SINE B4 69 207 -81 6 1077 926 43 0 8 chr9 64527801 64527918 -59548254 + B1_Mus2 SINE Alu 2 117 -30 6 1077 549 210 0 8 chr9 64528802 64528918 -59547254 - PB1D7 SINE Alu -6 114 4 6 1077 232 318 51 60 chr9 64529663 64529780 -59546392 + MT2B LTR ERVL 142 257 -344 7 1077 710 194 93 0 chr9 64529693 64529822 -59546350 + ID_B1 SINE B4 84 224 0 7 1077 446 257 20 54 chr9 64529949 64530097 -59546075 - B1F1 SINE Alu -5 144 2 7 1077 1331 149 42 5 chr9 64530752 64530967 -59545205 - URR1B DNA MER1_type 0 225 3 7 1077 184 214 214 0 chr9 64531410 64531466 -59544706 + L2c LINE L2 3311 3378 -9 7 1077 372 228 51 0 chr9 64531637 64531716 -59544456 - B1F SINE Alu 0 149 67 7 1077 492 165 12 12 chr9 64531645 64531725 -59544447 - ID_B1 SINE B4 -8 216 137 7 1077 324 316 114 50 chr9 64532166 64532386 -59543786 - B4A SINE B4 -10 282 49 7 1077 269 218 46 103 chr9 64532317 64532404 -59543768 - B3A SINE B2 -82 116 35 7 1077 256 271 17 0 chr9 64532996 64533055 -59543117 - ID_B1 SINE B4 -20 204 145 7 1077 711 132 0 0 chr9 64533074 64533188 -59542984 + (TA)n Simple_repeat Simple_repeat 1 114 0 8 1077 395 218 200 83 chr9 64533207 64533352 -59542820 - RSINE1 SINE B4 0 165 4 8 1077 260 337 34 0 chr9 64534424 64534513 -59541659 - MIR SINE MIR -131 131 40 8 1077 996 123 0 0 chr9 64534515 64534670 -59541502 + (GAAA)n Simple_repeat Simple_repeat 3 157 0 8 1077 276 268 0 0 chr9 64534678 64534760 -59541412 + A-rich Low_complexity Low_complexity 1 82 0 8 1077 456 265 0 19 chr9 64534765 64534869 -59541303 + PB1D10 SINE Alu 3 104 -13 8 1077 389 190 51 0 chr9 64535017 64535096 -59541076 - L3 LINE CR1 -94 4395 4313 8 1077 456 272 153 32 chr9 64536561 64536751 -59539421 + B3 SINE B2 2 214 -2 8 1077 581 294 6 24 chr9 64538010 64538177 -59537995 - RSINE1 SINE B4 0 165 2 8 1077 203 318 0 12 chr9 64538951 64539037 -59537135 + C-rich Low_complexity Low_complexity 6 90 0 8 1077 195 235 150 42 chr9 64540477 64540597 -59535575 + MIRc SINE MIR 2 134 -134 9 1077 314 245 20 39 chr9 64540667 64540769 -59535403 + MIRb SINE MIR 165 264 -4 9 1077 242 263 127 7 chr9 64541164 64541280 -59534892 + MIRc SINE MIR 6 141 -135 9 1077 516 230 199 80 chr9 64546993 64547144 -59529028 + B3A SINE B2 22 190 -3 9 1077 306 268 43 120 chr9 64548541 64548782 -59527390 + MIRc SINE MIR 29 253 -15 9 1077 188 281 0 34 chr9 64548851 64548910 -59527262 - MER5A DNA MER1_type -3 186 130 9 1077 209 250 72 72 chr9 64549361 64549486 -59526686 + MIRb SINE MIR 105 229 -39 9 1077 277 278 156 31 chr9 64549975 64550135 -59526037 + MIR3 SINE MIR 15 194 -14 9 1077 186 192 189 19 chr9 64551509 64551562 -59524610 + MIRc SINE MIR 120 181 -87 9 1077 331 269 72 63 chr9 64551596 64551707 -59524465 - B1_Mus1 SINE Alu 0 148 37 9 1077 213 311 109 3 chr9 64553121 64553224 -59522948 + MIR SINE MIR 19 128 -148 1 1077 350 202 25 12 chr9 64555298 64555378 -59520794 + ID4 SINE ID 2 82 -1 1 1077 562 174 27 9 chr9 64557434 64557544 -59518628 + PB1D7 SINE Alu 8 119 -1 1 1077 477 222 99 49 chr9 64557551 64557693 -59518479 + B1F SINE Alu 1 149 0 1 1077 23 0 0 0 chr9 64557703 64557726 -59518446 + AT_rich Low_complexity Low_complexity 1 23 0 1 1077 292 175 60 60 chr9 64557729 64557796 -59518376 + ID SINE ID 15 81 -143 1 1077 318 199 60 26 chr9 64557736 64557823 -59518349 + ID4 SINE ID 18 104 -48 1 1077 244 192 98 0 chr9 64557830 64557908 -59518264 + RSINE1 SINE B4 31 124 -41 1 1077 441 0 0 0 chr9 64557909 64557958 -59518214 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1077 420 20 0 0 chr9 64557958 64558006 -59518166 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1077 1490 28 67 0 chr9 64558320 64558479 -59517693 + B2_Mm1a SINE B2 2 160 -33 1 1077 249 33 0 0 chr9 64558479 64558509 -59517663 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1077 1490 28 67 0 chr9 64558509 64558528 -59517644 + B2_Mm1a SINE B2 161 190 -3 1 1077 282 148 0 0 chr9 64558549 64558603 -59517569 + (CCA)n Simple_repeat Simple_repeat 3 56 0 1 1077 315 0 0 0 chr9 64558606 64558641 -59517531 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1077 488 246 69 0 chr9 64559493 64559623 -59516549 + RSINE1 SINE B4 2 140 -25 1 1077 240 125 0 0 chr9 64560351 64560391 -59515781 - ID_B1 SINE B4 -71 153 114 1 1077 275 314 10 10 chr9 64560520 64560623 -59515549 + PB1D10 SINE Alu 15 117 0 1 1077 30 27 0 0 chr9 64560633 64560670 -59515502 + AT_rich Low_complexity Low_complexity 1 37 0 1 1077 1448 70 21 5 chr9 64560796 64560982 -59515190 + B2_Mm2 SINE B2 2 190 -5 1 1077 991 135 14 0 chr9 64561342 64561490 -59514682 - B1_Mur4 SINE Alu 0 150 1 1 1077 377 302 15 15 chr9 64561865 64561996 -59514176 - B1_Mur3 SINE Alu 0 149 19 1 1077 24 0 0 0 chr9 64562756 64562780 -59513392 + AT_rich Low_complexity Low_complexity 1 24 0 1 1077 588 265 8 8 chr9 64564908 64565041 -59511131 + ID_B1 SINE B4 84 216 -8 1 1077 510 117 39 3 chr9 64565104 64565208 -59510964 + B1_Mur4 SINE Alu 2 150 0 1 1077 210 105 0 0 chr9 64565211 64565249 -59510923 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1077 609 209 63 21 chr9 64565541 64565683 -59510489 + B1_Mur1 SINE Alu 2 149 0 1 1077 573 237 0 112 chr9 64565883 64566035 -59510137 + B1_Mm SINE Alu 1 135 -12 1 1077 306 295 113 51 chr9 64566056 64566313 -59509859 + L1MC5 LINE L1 7507 7779 -182 1 1077 623 262 86 10 chr9 64566431 64566628 -59509544 + B3 SINE B2 5 216 0 1 1077 512 281 73 30 chr9 64566667 64566832 -59509340 + B3A SINE B2 1 172 -26 1 1077 234 0 0 0 chr9 64566850 64566876 -59509296 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1077 476 307 7 14 chr9 64567034 64567176 -59508996 + RSINE1 SINE B4 4 144 -21 1 1077 801 207 7 0 chr9 64567239 64567379 -59508793 + B1_Mus2 SINE Alu 1 141 -6 1 1077 517 247 26 52 chr9 64568486 64568640 -59507532 + B3A SINE B2 46 195 -3 1 1077 370 257 157 0 chr9 64568852 64568992 -59507180 + RSINE1 SINE B4 4 165 0 1 1077 212 146 0 24 chr9 64569081 64569123 -59507049 - PB1 SINE Alu -3 124 77 1 1077 861 271 151 52 chr9 64569274 64569789 -59506383 + L1MC4 LINE L1 7328 7887 -155 1 1077 347 0 0 77 chr9 64569789 64569841 -59506331 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1077 861 271 151 52 chr9 64569841 64569976 -59506196 + L1MC4 LINE L1 7888 8042 0 1 1077 1298 88 49 16 chr9 64570079 64570264 -59505908 + B2_Mm2 SINE B2 3 193 -2 1 1077 282 289 0 0 chr9 64570494 64570570 -59505602 + RSINE1 SINE B4 15 90 -75 1 1077 337 312 0 21 chr9 64570663 64570758 -59505414 + B1_Mus2 SINE Alu 2 94 -53 1 1077 814 161 0 0 chr9 64570942 64571072 -59505100 + B1_Mus1 SINE Alu 6 135 -13 1 1077 261 0 0 0 chr9 64571072 64571101 -59505071 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1 1077 2242 159 43 18 chr9 64571108 64571505 -59504667 + MTB_Mm LTR MaLR 1 407 0 1 1077 25 0 0 0 chr9 64571555 64571580 -59504592 + AT_rich Low_complexity Low_complexity 1 25 0 1 1077 235 238 32 0 chr9 64571637 64571700 -59504472 - MIRb SINE MIR -15 253 189 1 1077 777 287 16 0 chr9 64571899 64572087 -59504085 - B3A SINE B2 -6 192 2 1 1077 338 225 86 51 chr9 64572093 64572210 -59503962 - MIRc SINE MIR -116 152 32 1 1077 646 246 90 48 chr9 64572750 64572938 -59503234 - B3A SINE B2 0 198 3 1 1077 278 197 0 14 chr9 64573447 64573519 -59502653 - ID4 SINE ID -9 74 4 1 1077 938 168 7 0 chr9 64573555 64573704 -59502468 - B1_Mur4 SINE Alu 0 150 1 1 1077 370 243 80 156 chr9 64574706 64575008 -59501164 + B4 SINE B4 2 280 -12 1 1077 221 277 0 12 chr9 64575014 64575098 -59501074 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1077 246 183 167 0 chr9 64575193 64575253 -59500919 + B1F SINE Alu 61 130 -19 1 1077 360 0 0 0 chr9 64575261 64575301 -59500871 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1077 891 227 98 25 chr9 64575335 64575611 -59500561 + Tigger7 DNA MER2_type 37 332 -2159 1 1077 967 261 0 0 chr9 64575663 64575870 -59500302 + B3 SINE B2 4 210 -6 1 1077 288 269 26 0 chr9 64575889 64575967 -59500205 + Tigger7 DNA MER2_type 2412 2491 0 1 1077 350 269 0 0 chr9 64577172 64577250 -59498922 + RSINE1 SINE B4 3 80 -85 1 1077 2645 117 186 5 chr9 64577274 64577719 -59498453 + RLTR11A2 LTR ERVK 2 527 0 1 1077 610 195 40 10 chr9 64577752 64577912 -59498260 - B3A SINE B2 -29 166 1 1 1077 696 222 36 96 chr9 64577959 64578178 -59497994 + B3 SINE B2 2 207 -9 1 1077 478 231 18 18 chr9 64578232 64578342 -59497830 + B1_Mur1 SINE Alu 38 147 -2 1 1077 750 145 0 8 chr9 64578360 64578485 -59497687 + B1_Mus1 SINE Alu 13 136 -12 1 1077 458 299 8 8 chr9 64578538 64578656 -59497516 - PB1D7 SINE Alu -2 118 1 1 1077 413 293 35 14 chr9 64579447 64579589 -59496583 + RSINE1 SINE B4 4 148 -17 1 1077 311 200 0 32 chr9 64580064 64580126 -59496046 - B3A SINE B2 -130 68 9 1 1077 29 70 0 0 chr9 64580245 64580302 -59495870 + AT_rich Low_complexity Low_complexity 1 57 0 1 1077 1183 68 0 0 chr9 64580305 64580451 -59495721 + B1_Mus1 SINE Alu 3 148 0 1 1077 1356 103 0 30 chr9 64580645 64580846 -59495326 + B2_Mm2 SINE B2 1 195 0 1 1077 24 0 0 0 chr9 64581628 64581652 -59494520 + AT_rich Low_complexity Low_complexity 1 24 0 1 1077 447 267 8 25 chr9 64581697 64581816 -59494356 - PB1D7 SINE Alu -2 118 2 1 1077 640 264 7 20 chr9 64582808 64582959 -59493213 + RSINE1 SINE B4 9 157 -8 1 1077 1241 48 0 0 chr9 64582992 64583139 -59493033 + B1_Mm SINE Alu 1 147 0 1 1077 33 25 0 0 chr9 64583139 64583179 -59492993 + AT_rich Low_complexity Low_complexity 1 40 0 1 1077 224 232 129 14 chr9 64583246 64583316 -59492856 - MIRm SINE MIR -89 187 110 1 1077 244 139 0 0 chr9 64583318 64583361 -59492811 + Lx9 LINE L1 7602 7644 0 1 1077 207 108 0 26 chr9 64583682 64583720 -59492452 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 1 1077 679 162 94 14 chr9 64583720 64583858 -59492314 - B1_Mur2 SINE Alu 0 149 1 1 1077 214 261 0 0 chr9 64584984 64585030 -59491142 + GA-rich Low_complexity Low_complexity 1 46 0 1 1077 636 28 0 0 chr9 64585852 64585924 -59490248 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 1 1077 432 200 59 0 chr9 64587225 64587310 -59488862 + PB1D9 SINE Alu 2 91 -29 1 1077 332 232 168 0 chr9 64587348 64587443 -59488729 + PB1D7 SINE Alu 1 111 -9 1 1077 519 237 26 0 chr9 64587463 64587577 -59488595 + RSINE1 SINE B4 13 129 -36 1 1077 237 269 118 0 chr9 64587854 64587947 -59488225 + PB1D10 SINE Alu 1 104 -13 1 1077 306 252 58 135 chr9 64587999 64588155 -59488017 + MLT1D LTR MaLR 256 399 -106 1 1077 396 238 0 0 chr9 64588260 64588344 -59487828 + ID_B1 SINE B4 84 167 -57 1 1077 496 284 7 28 chr9 64588865 64589010 -59487162 + B3A SINE B2 57 198 0 1 1077 426 85 0 0 chr9 64589030 64589089 -59487083 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1077 182 118 0 29 chr9 64589338 64589373 -59486799 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1077 1538 52 0 10 chr9 64589403 64589596 -59486576 - B2_Mm2 SINE B2 -3 192 2 1 1077 189 0 0 0 chr9 64589608 64589629 -59486543 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 1 1077 1169 44 0 0 chr9 64589630 64589767 -59486405 - B1_Mus1 SINE Alu -10 138 2 1 1077 451 267 239 0 chr9 64590044 64590220 -59485952 - ID_B1 SINE B4 -2 222 5 1 1077 263 285 102 20 chr9 64590600 64590747 -59485425 - L1M LINE L1 -752 5421 5263 1 1077 182 62 31 0 chr9 64590762 64590794 -59485378 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1077 694 191 101 87 chr9 64590812 64591019 -59485153 + B3 SINE B2 1 210 -6 1 1077 616 259 15 50 chr9 64591022 64591046 -59485126 - B3A SINE B2 -4 194 172 1 1077 1257 62 0 0 chr9 64591046 64591226 -59484946 + (TG)n Simple_repeat Simple_repeat 1 182 -213 1 1077 1257 62 0 0 chr9 64591232 64591441 -59484731 + (TG)n Simple_repeat Simple_repeat 183 395 0 1 1077 616 259 15 50 chr9 64591441 64591573 -59484599 - B3A SINE B2 -32 166 39 1 1077 3002 95 0 2 chr9 64591573 64591974 -59484198 + MTB LTR MaLR 1 400 0 1 1077 616 259 15 50 chr9 64591974 64592004 -59484168 - B3A SINE B2 -160 38 8 1 1077 253 138 29 44 chr9 64592017 64592085 -59484087 + T-rich Low_complexity Low_complexity 6 72 0 1 1077 1056 57 20 41 chr9 64592085 64592231 -59483941 - B1_Mm SINE Alu 0 147 5 2 1077 291 245 156 21 chr9 64592463 64592559 -59483613 - RSINE1 SINE B4 -8 157 49 2 1077 3068 18 3 0 chr9 64592631 64592972 -59483200 - ORR1A1 LTR MaLR 0 346 5 2 1077 948 237 5 0 chr9 64593245 64593452 -59482720 - B3 SINE B2 -8 208 1 2 1077 546 219 8 16 chr9 64593452 64593577 -59482595 - MTD LTR MaLR -26 393 270 2 1077 286 167 4 0 chr9 64593590 64593648 -59482524 + MERVL-int LTR ERVL 4459 4503 -982 2 1077 619 253 89 40 chr9 64593660 64593905 -59482267 - MTD LTR MaLR -180 227 1 2 1077 351 0 0 0 chr9 64593934 64593973 -59482199 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1077 775 188 20 14 chr9 64593983 64594129 -59482043 + B1_Mur1 SINE Alu 3 149 0 2 1077 269 211 190 50 chr9 64594135 64594235 -59481937 + PB1D10 SINE Alu 1 114 -3 2 1077 484 215 0 0 chr9 64594543 64594636 -59481536 + PB1D10 SINE Alu 1 93 -24 2 1077 284 254 89 16 chr9 64594704 64594828 -59481344 - L2a LINE L2 -262 3164 3032 2 1077 320 257 10 0 chr9 64595151 64595252 -59480920 - L2a LINE L2 -578 2841 2740 2 1077 216 343 69 0 chr9 64595259 64595276 -59480896 + B4 SINE B4 70 93 -199 2 1077 458 237 26 0 chr9 64595276 64595390 -59480782 + PB1D9 SINE Alu 2 118 -2 2 1077 828 137 0 0 chr9 64595412 64595551 -59480621 + (GGAA)n Simple_repeat Simple_repeat 1 139 0 2 1077 243 250 0 0 chr9 64595611 64595659 -59480513 - Kanga1 DNA Tc2 -1660 85 38 2 1077 279 349 24 0 chr9 64595712 64595838 -59480334 - MER20B DNA MER1_type -333 450 322 2 1077 489 221 72 72 chr9 64595929 64596068 -59480104 + B3A SINE B2 1 143 -52 2 1077 501 127 0 0 chr9 64596068 64596147 -59480025 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1077 356 221 72 72 chr9 64596147 64596202 -59479970 + B2_Mm2 SINE B2 144 195 0 2 1077 1164 226 80 56 chr9 64596542 64596880 -59479292 - ORR1D2 LTR MaLR 0 370 25 2 1077 1201 54 0 0 chr9 64596920 64597067 -59479105 - B1_Mm SINE Alu 0 147 1 2 1077 212 255 21 0 chr9 64597217 64597264 -59478908 - ID SINE ID -158 66 19 2 1077 342 244 0 0 chr9 64597285 64597363 -59478809 + MTB_Mm LTR MaLR 3 80 -341 2 1077 204 143 0 0 chr9 64597376 64597397 -59478775 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1077 1112 35 27 20 chr9 64597397 64597543 -59478629 + B1_Mm SINE Alu 1 147 0 2 1077 204 143 0 0 chr9 64597543 64597570 -59478602 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1077 1270 162 155 24 chr9 64597571 64597594 -59478578 + MTB_Mm LTR MaLR 72 94 -313 2 1077 3121 17 0 3 chr9 64597594 64597941 -59478231 + ORR1A0 LTR MaLR 1 346 0 2 1077 1270 162 155 24 chr9 64597941 64598214 -59477958 + MTB_Mm LTR MaLR 95 407 0 2 1077 554 244 15 0 chr9 64598214 64598338 -59477834 - ID_B1 SINE B4 -18 206 81 2 1077 640 267 23 19 chr9 64598357 64598571 -59477601 - L1MB2 LINE L1 -96 6075 5861 2 1077 358 333 56 23 chr9 64598583 64598798 -59477374 - RMER15 LTR ERVL -18 557 336 2 1077 459 141 0 0 chr9 64599194 64599272 -59476900 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 2 1077 962 59 7 14 chr9 64599293 64599431 -59476741 - B1_Mus2 SINE Alu -2 145 9 2 1077 183 129 0 0 chr9 64599605 64599636 -59476536 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1077 598 293 25 13 chr9 64599639 64599798 -59476374 - B3A SINE B2 -35 163 3 2 1077 31 82 0 0 chr9 64599878 64599951 -59476221 + AT_rich Low_complexity Low_complexity 1 73 0 2 1077 26 0 0 0 chr9 64599971 64599997 -59476175 + AT_rich Low_complexity Low_complexity 1 26 0 2 1077 637 154 138 0 chr9 64600005 64600135 -59476037 + B3 SINE B2 1 148 -68 2 1077 409 281 141 0 chr9 64600205 64600326 -59475846 - ID_B1 SINE B4 -2 222 85 2 1077 695 201 27 27 chr9 64600437 64600585 -59475587 - B1_Mur1 SINE Alu 0 149 2 2 1077 340 235 96 40 chr9 64600585 64600762 -59475410 - L1MC5 LINE L1 -51 7910 7724 2 1077 841 248 29 10 chr9 64600955 64601159 -59475013 - B3 SINE B2 -7 209 2 2 1077 334 275 0 0 chr9 64601287 64601367 -59474805 + B4A SINE B4 195 274 -18 2 1077 336 145 0 0 chr9 64601439 64601501 -59474671 - L1MB8 LINE L1 -6 6172 6111 2 1077 618 82 0 0 chr9 64601594 64601679 -59474493 + (TTTTA)n Simple_repeat Simple_repeat 2 86 0 2 1077 1231 68 0 0 chr9 64601680 64601828 -59474344 - B1_Mus1 SINE Alu 0 148 1 2 1077 517 225 267 17 chr9 64601954 64602126 -59474046 - B3 SINE B2 -1 215 1 2 1077 523 244 244 14 chr9 64602241 64602518 -59473654 + ORR1D2 LTR MaLR 1 341 -18 2 1077 614 224 6 64 chr9 64603593 64603750 -59472422 - B1_Mur1 SINE Alu -1 148 1 2 1077 336 24 0 0 chr9 64603768 64603809 -59472363 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 2 1077 545 101 0 0 chr9 64603865 64603944 -59472228 - B2_Mm2 SINE B2 -79 116 38 2 1077 1344 156 14 0 chr9 64603981 64604192 -59471980 - B3 SINE B2 -1 215 2 2 1077 994 66 73 7 chr9 64604231 64604368 -59471804 - B1_Mus1 SINE Alu -1 147 2 2 1077 525 196 217 0 chr9 64604381 64604524 -59471648 - B3 SINE B2 -41 175 2 2 1077 469 38 109 30 chr9 64604564 64604729 -59471443 + (TGG)n Simple_repeat Simple_repeat 3 180 0 2 1077 674 85 36 45 chr9 64604733 64604954 -59471218 + (GTGTG)n Simple_repeat Simple_repeat 1 218 0 2 1077 382 294 39 8 chr9 64604966 64605093 -59471079 + ID_B1 SINE B4 87 217 -7 2 1077 752 134 102 8 chr9 64605117 64605245 -59470927 + B1_Mus2 SINE Alu 1 140 -7 2 1077 1329 154 14 0 chr9 64605374 64605582 -59470590 + B3 SINE B2 5 215 -1 2 1077 25 31 0 0 chr9 64605584 64605616 -59470556 + AT_rich Low_complexity Low_complexity 1 32 0 2 1077 690 13 0 0 chr9 64605619 64605698 -59470474 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1077 243 246 49 0 chr9 64605721 64605782 -59470390 + RMER15 LTR ERVL 403 466 -109 2 1077 239 298 60 17 chr9 64605785 64605901 -59470271 + Lx8 LINE L1 7337 7457 -16 2 1077 571 216 28 21 chr9 64606321 64606463 -59469709 + RSINE1 SINE B4 13 155 -10 2 1077 1215 61 0 0 chr9 64606539 64606686 -59469486 - B1_Mus2 SINE Alu 0 147 1 2 1077 334 228 41 52 chr9 64607329 64607426 -59468746 + ID_B1 SINE B4 123 218 -6 2 1077 1109 98 12 0 chr9 64607473 64607646 -59468526 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2 1077 1099 83 0 0 chr9 64607646 64607791 -59468381 - B1_Mus1 SINE Alu -3 145 1 2 1077 216 163 0 0 chr9 64607794 64607837 -59468335 + CT-rich Low_complexity Low_complexity 1 43 0 2 1077 750 53 0 0 chr9 64607837 64607932 -59468240 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 2 1077 972 131 0 0 chr9 64607940 64608077 -59468095 - B1_Mur4 SINE Alu -13 137 1 2 1077 629 304 0 0 chr9 64608139 64608297 -59467875 - RSINE1 SINE B4 0 165 8 2 1077 231 272 52 42 chr9 64608574 64608670 -59467502 + L1MEe LINE L1 272 368 -4486 2 1077 1161 57 0 0 chr9 64608968 64609108 -59467064 + B1_Mus1 SINE Alu 2 141 -7 2 1077 333 0 0 0 chr9 64609122 64609159 -59467013 + (GAAAA)n Simple_repeat Simple_repeat 5 41 0 2 1077 945 145 0 16 chr9 64609271 64609453 -59466719 + GA-rich Low_complexity Low_complexity 1 179 0 2 1077 406 210 138 32 chr9 64609518 64609641 -59466531 - B1F1 SINE Alu -9 140 5 2 1077 733 223 254 26 chr9 64609791 64610169 -59466003 - RMER13A LTR ERVK -396 464 1 2 1077 925 136 7 7 chr9 64610263 64610411 -59465761 - B1_Mur3 SINE Alu -1 148 1 2 1077 1131 123 60 16 chr9 64610488 64610670 -59465502 - B2_Mm1t SINE B2 -1 192 3 2 1077 206 164 0 18 chr9 64610732 64610788 -59465384 + CT-rich Low_complexity Low_complexity 2 56 0 2 1077 915 134 0 0 chr9 64610789 64610968 -59465204 + (TC)n Simple_repeat Simple_repeat 2 180 0 2 1077 375 73 0 0 chr9 64610987 64611042 -59465130 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 2 1077 402 273 150 7 chr9 64611233 64611373 -59464799 - RSINE1 SINE B4 -4 161 2 2 1077 950 154 0 13 chr9 64611461 64611612 -59464560 - B1_Mur4 SINE Alu -1 149 1 2 1077 378 0 0 0 chr9 64612374 64612416 -59463756 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1077 396 0 0 0 chr9 64612417 64612461 -59463711 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1077 252 100 0 0 chr9 64612461 64612500 -59463672 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1077 526 233 0 0 chr9 64612515 64612631 -59463541 - RSINE1 SINE B4 -45 120 5 2 1077 537 235 293 12 chr9 64613171 64613226 -59462946 + B3 SINE B2 1 96 -120 2 1077 1461 34 32 43 chr9 64613226 64613412 -59462760 + B2_Mm1a SINE B2 2 185 -8 2 1077 537 235 293 12 chr9 64613412 64613520 -59462652 + B3 SINE B2 97 210 -6 2 1077 228 35 0 0 chr9 64613552 64613581 -59462591 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1077 676 233 0 0 chr9 64613606 64613735 -59462437 + RSINE1 SINE B4 4 132 -33 2 1077 273 259 17 0 chr9 64613854 64613912 -59462260 + ID4_ SINE ID 18 76 -7 2 1077 180 0 0 0 chr9 64613917 64613937 -59462235 + (GGA)n Simple_repeat Simple_repeat 2 21 0 2 1077 833 237 14 63 chr9 64614014 64614221 -59461951 + B3A SINE B2 2 198 0 2 1077 235 224 164 0 chr9 64614232 64614299 -59461873 + PB1D9 SINE Alu 2 79 -41 2 1077 740 140 73 5 chr9 64614309 64614454 -59461718 - B2_Mm1a SINE B2 -2 191 42 2 1077 515 232 39 16 chr9 64614948 64615075 -59461097 - B1F SINE Alu -2 147 18 2 1077 334 263 159 93 chr9 64615075 64615093 -59461079 - B4 SINE B4 -62 197 70 2 1077 573 251 180 0 chr9 64615125 64615308 -59460864 - B3 SINE B2 0 216 1 2 1077 705 119 0 18 chr9 64615349 64615460 -59460712 - B1_Mus2 SINE Alu 0 147 39 2 1077 546 0 136 0 chr9 64615498 64615652 -59460520 + (CCTG)n Simple_repeat Simple_repeat 2 176 0 3 1077 880 226 15 20 chr9 64615945 64616144 -59460028 - ID_B1 SINE B4 -2 222 25 3 1077 1340 94 17 0 chr9 64616180 64616361 -59459811 - B2_Mm1t SINE B2 -8 185 2 3 1077 213 65 0 0 chr9 64616428 64616459 -59459713 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1077 1245 72 0 0 chr9 64616463 64616630 -59459542 - B2_Mm2 SINE B2 -27 168 2 3 1077 405 0 0 0 chr9 64616653 64616698 -59459474 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1077 1228 35 7 0 chr9 64616752 64616897 -59459275 + B1_Mm SINE Alu 2 147 0 3 1077 258 56 0 0 chr9 64616994 64617030 -59459142 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1077 839 267 26 0 chr9 64617894 64618085 -59458087 + B3A SINE B2 3 198 0 3 134 795 237 6 23 chr9 64618483 64618656 -59457516 - B4 SINE B4 -79 213 44 3 1078 507 254 120 16 chr9 64618708 64618892 -59457280 - MER3 DNA MER1_type -6 203 1 3 1078 3561 169 106 36 chr9 64619500 64620370 -59455802 + RMER19B LTR ERVK 24 890 -12 3 1078 446 242 10 0 chr9 64620382 64620481 -59455691 + PB1D10 SINE Alu 1 100 -17 3 1078 324 0 0 0 chr9 64620483 64620519 -59455653 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1078 582 255 11 75 chr9 64620524 64620698 -59455474 - RSINE1 SINE B4 0 165 3 3 1078 195 42 0 0 chr9 64620849 64620873 -59455299 + (GGGTG)n Simple_repeat Simple_repeat 1 24 0 3 1078 474 65 0 0 chr9 64621743 64621805 -59454367 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 1078 912 127 146 29 chr9 64621841 64622012 -59454160 - B2_Mm2 SINE B2 -3 192 2 3 1078 933 290 0 43 chr9 64622899 64623180 -59452992 + B4A SINE B4 1 269 -23 3 1078 776 239 10 67 chr9 64623565 64623758 -59452414 + B3A SINE B2 11 192 -6 3 1078 773 245 87 98 chr9 64623760 64624117 -59452055 + L1MB7 LINE L1 5816 6168 -16 3 1078 401 329 34 14 chr9 64624162 64624369 -59451803 - RMER15 LTR ERVL -18 557 347 3 1078 1708 47 0 0 chr9 64624506 64624720 -59451452 + L1Md_F2 LINE L1 6369 6582 0 3 1078 767 262 46 18 chr9 64624885 64625103 -59451069 - ID_B1 SINE B4 0 224 1 3 1078 283 238 15 45 chr9 64625162 64625228 -59450944 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 3 1078 1094 203 31 31 chr9 64625796 64626020 -59450152 + URR1B DNA MER1_type 2 225 0 3 1078 728 225 13 30 chr9 64626026 64626231 -59449941 + B3A SINE B2 9 210 -6 3 1078 896 209 47 28 chr9 64626479 64626691 -59449481 - B3 SINE B2 0 216 1 3 1078 586 256 39 39 chr9 64626886 64627065 -59449107 - B3A SINE B2 -16 182 4 3 1078 769 253 51 5 chr9 64627234 64627429 -59448743 + ID_B1 SINE B4 5 208 -16 3 1078 511 216 323 0 chr9 64628179 64628346 -59447826 + ID_B1 SINE B4 4 224 0 3 1078 455 281 106 14 chr9 64628364 64628505 -59447667 + RSINE1 SINE B4 7 160 -5 3 1078 227 208 19 19 chr9 64628662 64628716 -59447456 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1078 405 0 0 0 chr9 64629003 64629048 -59447124 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1078 513 253 38 45 chr9 64629069 64629226 -59446946 - RSINE1 SINE B4 -9 156 1 3 1078 542 225 64 14 chr9 64629494 64629634 -59446538 - B1F1 SINE Alu -1 148 2 3 1078 828 236 70 0 chr9 64629748 64629947 -59446225 - B3 SINE B2 -3 213 1 3 1078 307 259 147 0 chr9 64629992 64630089 -59446083 - B1F2 SINE Alu -2 115 6 3 1078 252 282 26 0 chr9 64630120 64630198 -59445974 - ID4 SINE ID -2 81 2 3 1078 734 263 67 0 chr9 64630276 64630455 -59445717 + B3A SINE B2 1 191 -7 3 1078 709 210 10 58 chr9 64630850 64631057 -59445115 + B3A SINE B2 1 197 -1 3 1078 293 305 24 12 chr9 64631683 64631766 -59444406 - RSINE1 SINE B4 0 165 82 3 1078 4248 52 2 0 chr9 64631780 64632297 -59443875 - L1Md_F2 LINE L1 -12 6570 6053 3 1078 416 19 19 0 chr9 64632512 64632565 -59443607 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1078 309 191 48 0 chr9 64632614 64632677 -59443495 - MIRc SINE MIR -121 147 82 3 1078 431 325 113 38 chr9 64633116 64633151 -59443021 - B4A SINE B4 -6 286 246 3 1078 638 252 19 85 chr9 64633151 64633363 -59442809 - B3A SINE B2 0 198 1 3 1078 972 242 29 20 chr9 64633363 64633592 -59442580 - ID_B1 SINE B4 -47 245 2 3 1078 230 245 19 0 chr9 64633593 64633646 -59442526 + CT-rich Low_complexity Low_complexity 4 57 0 3 1078 776 154 7 14 chr9 64634353 64634491 -59441681 - B1_Mur3 SINE Alu 0 149 13 3 1078 297 219 0 0 chr9 64634590 64634663 -59441509 + CT-rich Low_complexity Low_complexity 2 74 0 3 1078 220 227 0 15 chr9 64634777 64634844 -59441328 + T-rich Low_complexity Low_complexity 3 68 0 3 1078 803 264 69 5 chr9 64634844 64635046 -59441126 - B4 SINE B4 -72 220 6 3 1078 387 0 0 0 chr9 64635047 64635090 -59441082 + (TTG)n Simple_repeat Simple_repeat 2 44 0 3 1078 648 132 0 0 chr9 64635090 64635196 -59440976 + (TCC)n Simple_repeat Simple_repeat 1 106 0 3 1078 935 169 0 0 chr9 64635196 64635338 -59440834 - B1_Mus1 SINE Alu -5 143 2 3 1078 431 290 15 0 chr9 64635467 64635598 -59440574 - L1ME3A LINE L1 -180 5993 5861 3 1078 720 267 14 62 chr9 64636355 64636563 -59439609 + B3A SINE B2 1 198 0 3 1078 613 260 27 33 chr9 64636590 64636773 -59439399 + B3 SINE B2 3 184 -32 3 1078 333 0 0 0 chr9 64636781 64636818 -59439354 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1078 482 296 12 25 chr9 64637481 64637644 -59438528 - RSINE1 SINE B4 -1 164 4 3 1078 203 61 0 29 chr9 64637651 64637685 -59438487 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1078 1016 153 22 69 chr9 64637685 64637917 -59438255 - Lx2 LINE L1 -3 6994 6774 3 1078 1332 70 5 0 chr9 64638344 64638530 -59437642 + B2_Mm1a SINE B2 7 193 0 3 1078 239 264 88 26 chr9 64638547 64638660 -59437512 + MIRm SINE MIR 21 140 -136 3 1078 211 222 22 0 chr9 64638778 64638823 -59437349 + ID SINE ID 13 58 -166 3 1078 222 328 0 0 chr9 64639440 64639498 -59436674 + polypyrimidine Low_complexity Low_complexity 2 59 0 3 1078 303 28 0 0 chr9 64639503 64639539 -59436633 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1078 240 122 0 0 chr9 64640035 64640076 -59436096 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1078 1043 203 24 24 chr9 64640101 64640308 -59435864 - ID_B1 SINE B4 -13 211 5 3 1078 389 240 0 74 chr9 64640411 64640519 -59435653 + PB1D10 SINE Alu 18 117 0 3 1078 206 32 32 0 chr9 64640555 64640586 -59435586 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1078 387 41 0 0 chr9 64641598 64641647 -59434525 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1078 222 37 0 0 chr9 64641648 64641675 -59434497 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1078 441 291 0 9 chr9 64641675 64641786 -59434386 - RSINE1 SINE B4 -51 114 5 3 1078 433 282 36 9 chr9 64641846 64641957 -59434215 - PB1 SINE Alu -13 114 1 3 1078 285 75 0 0 chr9 64641959 64641999 -59434173 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 3 1078 234 279 15 0 chr9 64642007 64642075 -59434097 - Lx8 LINE L1 0 7473 7405 3 1078 577 240 15 8 chr9 64642110 64642240 -59433932 + ID_B1 SINE B4 88 218 -6 3 1078 642 249 35 17 chr9 64642772 64642944 -59433228 + B3 SINE B2 35 209 -7 3 1078 949 72 48 48 chr9 64643821 64643966 -59432206 + B1_Mus1 SINE Alu 4 148 0 3 1078 419 95 0 45 chr9 64643967 64644055 -59432117 + (A)n Simple_repeat Simple_repeat 1 84 0 3 1078 255 31 0 0 chr9 64644304 64644336 -59431836 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 3 1078 516 239 21 28 chr9 64644336 64644478 -59431694 - ID_B1 SINE B4 -14 210 70 3 1078 255 317 0 35 chr9 64644700 64644785 -59431387 + RSINE1 SINE B4 1 82 -83 3 1078 651 230 0 28 chr9 64644847 64644990 -59431182 + B1_Mur1 SINE Alu 2 140 -9 3 1078 261 0 0 0 chr9 64644990 64645019 -59431153 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1078 237 288 30 0 chr9 64645092 64645158 -59431014 + RSINE1 SINE B4 98 165 0 3 1078 900 27 0 0 chr9 64645218 64645330 -59430842 - B2_Mm2 SINE B2 -82 113 2 3 1078 412 225 225 0 chr9 64645611 64645762 -59430410 - MTD LTR MaLR 0 419 235 3 1078 228 245 19 0 chr9 64645752 64645805 -59430367 - B1_Mur4 SINE Alu -91 59 6 3 1078 294 29 0 0 chr9 64645859 64645894 -59430278 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1078 1149 75 6 0 chr9 64645894 64646055 -59430117 - B2_Mm2 SINE B2 -33 162 1 3 1078 865 212 55 5 chr9 64646055 64646253 -59429919 - MTD LTR MaLR -209 210 3 3 1078 1017 236 46 18 chr9 64646557 64646837 -59429335 - B4 SINE B4 0 292 5 3 1078 380 181 0 0 chr9 64646842 64646914 -59429258 - B3A SINE B2 -124 74 3 3 1078 240 35 0 0 chr9 64646937 64646966 -59429206 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1078 1059 90 6 12 chr9 64646980 64647148 -59429024 + (GAGAA)n Simple_repeat Simple_repeat 5 171 0 3 1078 656 320 40 7 chr9 64647321 64647595 -59428577 - B4A SINE B4 -8 284 2 3 1078 1129 62 0 20 chr9 64647606 64647621 -59428551 - B1_Mm SINE Alu 0 147 135 3 1078 252 0 0 0 chr9 64647621 64647649 -59428523 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1078 1129 62 0 20 chr9 64647649 64647782 -59428390 - B1_Mm SINE Alu -13 134 2 3 1078 1405 75 37 0 chr9 64647875 64648062 -59428110 - B2_Mm2 SINE B2 0 195 2 3 1078 233 260 304 16 chr9 64648078 64648193 -59427979 + L1M5 LINE L1 5677 5824 -340 3 1078 684 150 110 0 chr9 64648252 64648379 -59427793 + B1_Mur4 SINE Alu 1 141 -9 3 1078 429 288 68 7 chr9 64648410 64648557 -59427615 - RMER15 LTR ERVL 0 575 420 4 1078 1258 130 42 9 chr9 64648929 64649146 -59427026 + RLTR17 LTR ERVK 203 426 -266 4 1078 482 197 154 8 chr9 64649546 64649669 -59426503 - B1F SINE Alu -7 142 2 4 1078 527 306 96 10 chr9 64649741 64649939 -59426233 + ID_B1 SINE B4 8 222 -2 4 1078 213 121 0 0 chr9 64649939 64649972 -59426200 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 4 1078 228 35 0 0 chr9 64650111 64650140 -59426032 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1078 535 190 12 37 chr9 64650223 64650387 -59425785 + CT-rich Low_complexity Low_complexity 2 161 0 4 1078 896 235 89 31 chr9 64650428 64650687 -59425485 - B4A SINE B4 -18 274 1 4 1078 790 203 0 0 chr9 64651128 64651261 -59424911 - B1_Mur2 SINE Alu -13 136 4 4 1078 1554 219 69 100 chr9 64651412 64651964 -59424208 + RMER15 LTR ERVL 21 555 -20 4 1078 382 183 48 12 chr9 64651958 64652041 -59424131 - B1F1 SINE Alu -63 86 1 4 1078 511 347 104 40 chr9 64652041 64652394 -59423778 - LTR16A LTR ERVL -45 406 31 4 1078 263 85 0 21 chr9 64652411 64652459 -59423713 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1078 563 197 59 66 chr9 64652522 64652658 -59423514 + ID_B1 SINE B4 89 223 -1 4 1078 357 24 0 0 chr9 64652979 64653021 -59423151 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1078 180 0 0 0 chr9 64653021 64653040 -59423132 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1078 644 258 24 48 chr9 64653041 64653208 -59422964 - B3 SINE B2 -52 164 2 4 1078 598 217 0 71 chr9 64653217 64653371 -59422801 - B1_Mur2 SINE Alu -5 144 2 4 1078 268 133 183 0 chr9 64653443 64653503 -59422669 + B1_Mur4 SINE Alu 61 131 -19 4 1078 454 271 0 9 chr9 64654706 64654814 -59421358 - RSINE1 SINE B4 -56 109 3 4 1078 1148 169 19 5 chr9 64655676 64655884 -59420288 + B3 SINE B2 6 216 0 4 1078 358 271 12 0 chr9 64656013 64656098 -59420074 + B4A SINE B4 1 86 -206 4 1078 707 174 0 0 chr9 64656111 64656232 -59419940 + MTC LTR MaLR 26 146 -275 4 1078 911 237 60 138 chr9 64656233 64656566 -59419606 - MTC LTR MaLR -114 307 1 4 1078 342 333 58 26 chr9 64656913 64657067 -59419105 + ID_B1 SINE B4 20 178 -46 4 1078 281 345 26 9 chr9 64656971 64657085 -59419087 + PB1D7 SINE Alu 5 120 0 4 1078 296 321 109 7 chr9 64657095 64657233 -59418939 - L1MA10 LINE L1 -4 6330 6179 4 1078 1110 88 0 0 chr9 64657350 64657497 -59418675 + B1_Mus1 SINE Alu 2 148 0 4 1078 252 0 0 0 chr9 64658156 64658184 -59417988 + (TTG)n Simple_repeat Simple_repeat 1 28 0 4 1078 480 18 0 0 chr9 64659870 64659927 -59416245 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1078 486 0 0 0 chr9 64661560 64661614 -59414558 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 4 1078 530 198 10 0 chr9 64661817 64661918 -59414254 - PB1D10 SINE Alu 0 117 16 4 1078 283 231 0 0 chr9 64662297 64662349 -59413823 - L2c LINE L2 -40 3347 3296 4 1078 571 265 221 8 chr9 64662642 64662882 -59413290 - B4A SINE B4 0 292 2 4 1078 424 266 36 7 chr9 64663288 64663428 -59412744 - ID_B1 SINE B4 -2 222 79 4 1078 1022 252 5 0 chr9 64663583 64663793 -59412379 - B3 SINE B2 -5 211 1 4 1078 1731 173 95 17 chr9 64663952 64664299 -59411873 + ORR1D1 LTR MaLR 1 374 0 4 1078 426 179 242 0 chr9 64664308 64664403 -59411769 + B1_Mus2 SINE Alu 1 118 -29 4 1078 1369 120 81 5 chr9 64664689 64664899 -59411273 + URR1A DNA MER1_type 1 226 0 4 1078 195 129 0 0 chr9 64665189 64665220 -59410952 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 4 1078 1068 97 14 0 chr9 64665220 64665365 -59410807 - B1_Mus1 SINE Alu 0 148 2 4 1078 22 70 0 0 chr9 64665377 64665420 -59410752 + AT_rich Low_complexity Low_complexity 1 43 0 4 1078 384 318 19 25 chr9 64665555 64665713 -59410459 - B4A SINE B4 -134 158 2 4 1078 315 213 0 0 chr9 64665852 64665927 -59410245 + CT-rich Low_complexity Low_complexity 2 76 0 4 1078 24 0 0 0 chr9 64666050 64666074 -59410098 + AT_rich Low_complexity Low_complexity 1 24 0 4 1078 234 237 118 0 chr9 64666202 64666278 -59409894 - ID_B1 SINE B4 -18 206 122 4 1078 351 0 0 0 chr9 64666354 64666393 -59409779 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1078 466 279 21 14 chr9 64666398 64666540 -59409632 - RSINE1 SINE B4 -12 153 11 4 1078 508 158 202 0 chr9 64667004 64667118 -59409054 + B1_Mur4 SINE Alu 4 140 -10 4 1078 24 0 0 0 chr9 64667118 64667142 -59409030 + AT_rich Low_complexity Low_complexity 1 24 0 4 1078 629 263 72 0 chr9 64667142 64667294 -59408878 + B3 SINE B2 25 187 -29 4 1078 498 253 35 112 chr9 64667419 64667458 -59408714 + RSINE1 SINE B4 2 32 -133 4 1078 1187 61 0 0 chr9 64667458 64667606 -59408566 + B1_Mus1 SINE Alu 1 148 0 4 1078 498 253 35 112 chr9 64667606 64667735 -59408437 + RSINE1 SINE B4 33 157 -8 4 1078 1178 48 14 0 chr9 64667773 64667918 -59408254 + B1_Mus2 SINE Alu 1 147 0 4 1078 208 139 0 0 chr9 64667934 64667970 -59408202 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1078 311 323 73 0 chr9 64668064 64668188 -59407984 + MIR SINE MIR 110 242 -20 4 1078 284 254 69 0 chr9 64669413 64669519 -59406653 + B1F SINE Alu 1 149 0 4 1078 21 0 0 0 chr9 64669608 64669629 -59406543 + AT_rich Low_complexity Low_complexity 1 21 0 4 1078 228 319 28 0 chr9 64669630 64669702 -59406470 - ID2 SINE ID -6 77 4 4 1078 258 32 0 0 chr9 64669843 64669874 -59406298 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1078 253 282 128 64 chr9 64669935 64670060 -59406112 - B1F2 SINE Alu -5 144 12 4 1078 587 167 125 0 chr9 64670378 64670498 -59405674 - B1_Mur1 SINE Alu -1 148 14 4 1078 280 200 26 103 chr9 64670429 64670507 -59405665 - MT2B LTR ERVL -363 238 167 4 1078 22 56 0 0 chr9 64670754 64670790 -59405382 + AT_rich Low_complexity Low_complexity 1 36 0 4 1078 301 291 47 0 chr9 64671017 64671103 -59405069 - B1F2 SINE Alu -7 142 53 4 1078 239 106 21 21 chr9 64671660 64671708 -59404464 - B1_Mus2 SINE Alu 0 147 100 4 1078 374 108 15 0 chr9 64671802 64671867 -59404305 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1078 441 0 0 0 chr9 64671943 64671992 -59404180 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1078 290 315 2 7 chr9 64672188 64672283 -59403889 - B1F2 SINE Alu -54 93 1 4 1078 246 324 103 99 chr9 64672957 64673200 -59402972 - MLT1N2 LTR MaLR -313 249 6 4 1078 294 273 98 74 chr9 64673587 64673872 -59402300 + L1ME2z LINE L1 5595 5886 -558 4 1078 735 235 59 15 chr9 64674102 64674305 -59401867 + B3 SINE B2 1 212 -4 4 1078 181 262 278 30 chr9 64674782 64674951 -59401221 + L2 LINE L2 1840 2050 -1369 4 1078 258 289 173 26 chr9 64675312 64675468 -59400704 - L2a LINE L2 0 3426 3248 4 1078 594 256 101 0 chr9 64675484 64675613 -59400559 + B1_Mur2 SINE Alu 1 142 -7 4 1078 225 154 0 0 chr9 64675614 64675653 -59400519 + (TATG)n Simple_repeat Simple_repeat 1 39 0 4 1078 21 0 0 0 chr9 64675663 64675684 -59400488 + AT_rich Low_complexity Low_complexity 1 21 0 4 1078 509 295 44 13 chr9 64675987 64676145 -59400027 + RSINE1 SINE B4 3 165 0 4 1078 304 356 88 29 chr9 64676200 64676360 -59399812 + MIR3 SINE MIR 7 176 -32 4 1078 33 66 0 0 chr9 64676443 64676504 -59399668 + AT_rich Low_complexity Low_complexity 1 61 0 4 1078 332 132 12 0 chr9 64676589 64676652 -59399520 - B1F SINE Alu -1 148 83 4 1078 268 218 24 71 chr9 64676599 64676683 -59399489 + PB1 SINE Alu 48 127 0 4 1078 512 226 184 34 chr9 64676964 64677143 -59399029 - B3 SINE B2 -10 206 1 4 1078 231 176 53 105 chr9 64677315 64677372 -59398800 - PB1D7 SINE Alu 0 120 67 4 1078 358 284 101 29 chr9 64677321 64677459 -59398713 - ID_B1 SINE B4 0 224 77 4 1078 1129 174 0 15 chr9 64677636 64677835 -59398337 + URR1B DNA MER1_type 20 215 -10 4 1078 21 0 0 0 chr9 64678364 64678385 -59397787 + AT_rich Low_complexity Low_complexity 1 21 0 4 1078 594 75 0 0 chr9 64678498 64678578 -59397594 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1078 601 213 0 0 chr9 64678578 64678686 -59397486 - RSINE1 SINE B4 -24 141 34 4 1078 261 139 0 0 chr9 64679731 64679774 -59396398 + (CATA)n Simple_repeat Simple_repeat 2 44 0 4 1078 227 31 31 0 chr9 64679910 64679942 -59396230 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 1078 1079 92 0 0 chr9 64679945 64680086 -59396086 - B1_Mus2 SINE Alu -6 141 1 4 1078 709 224 216 23 chr9 64680105 64680415 -59395757 + BLACKJACK DNA AcHobo 1121 1490 -1454 4 1078 1471 58 5 11 chr9 64680426 64680617 -59395555 + B2_Mm2 SINE B2 2 191 -4 4 1078 522 316 36 7 chr9 64680642 64680779 -59395393 + RSINE1 SINE B4 2 142 -23 4 1078 342 0 0 0 chr9 64680783 64680821 -59395351 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1078 244 285 132 28 chr9 64680826 64681075 -59395097 + BLACKJACK DNA AcHobo 1479 1753 -1191 4 1078 411 315 9 0 chr9 64681216 64681324 -59394848 + PB1D10 SINE Alu 8 116 -1 4 1078 543 125 0 0 chr9 64681488 64681515 -59394657 + (TCC)n Simple_repeat Simple_repeat 1 27 0 4 1078 1203 107 0 0 chr9 64681515 64681693 -59394479 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 1078 543 125 0 0 chr9 64681693 64681753 -59394419 + (TCC)n Simple_repeat Simple_repeat 1 60 0 4 1078 878 166 0 6 chr9 64681746 64681922 -59394250 + CT-rich Low_complexity Low_complexity 4 178 0 5 1078 511 145 12 12 chr9 64681926 64682023 -59394149 - B1_Mur4 SINE Alu -13 136 40 5 1078 226 164 14 129 chr9 64681972 64682042 -59394130 - 4.5SRNA scRNA scRNA -8 86 25 5 1078 21 0 0 0 chr9 64683292 64683313 -59392859 + AT_rich Low_complexity Low_complexity 1 21 0 5 1078 343 260 43 22 chr9 64683339 64683428 -59392744 + PB1D10 SINE Alu 4 87 -227 5 1078 298 291 10 173 chr9 64684005 64684213 -59391959 + ID_B1 SINE B4 2 175 -49 5 1078 622 140 0 41 chr9 64684125 64684222 -59391950 + PB1D9 SINE Alu 14 106 -14 5 1078 24 53 0 0 chr9 64684347 64684385 -59391787 + AT_rich Low_complexity Low_complexity 1 38 0 5 1078 481 307 69 38 chr9 64684488 64684647 -59391525 - RSINE1 SINE B4 0 165 2 5 1078 185 108 0 26 chr9 64684924 64684962 -59391210 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1078 423 231 0 0 chr9 64685008 64685099 -59391073 - B4A SINE B4 -20 272 182 5 1078 405 190 25 0 chr9 64685142 64685221 -59390951 - B4A SINE B4 -197 95 15 5 1078 302 240 180 8 chr9 64685787 64685909 -59390263 - L1MEd LINE L1 -5359 760 618 5 1078 242 206 206 0 chr9 64686052 64686120 -59390052 - ID4 SINE ID 0 83 2 5 1078 424 200 30 10 chr9 64687052 64687166 -59389006 + B1F SINE Alu 16 128 -19 5 1078 1204 56 0 0 chr9 64687369 64687513 -59388659 - B1_Mm SINE Alu -2 145 2 5 1078 2072 272 61 17 chr9 64687673 64688480 -59387692 - L1MB8 LINE L1 -1 6177 5335 5 1078 1241 106 6 11 chr9 64688481 64688662 -59387510 - B2_Mm1a SINE B2 -3 190 11 5 1078 279 203 16 0 chr9 64688677 64688741 -59387431 - L1MB8 LINE L1 -865 5281 5217 5 1078 753 181 80 0 chr9 64688754 64688892 -59387280 + B1_Mur4 SINE Alu 2 150 0 5 1078 234 0 0 0 chr9 64688892 64688918 -59387254 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 5 1078 1119 175 57 0 chr9 64688954 64689148 -59387024 - B3 SINE B2 -11 205 1 5 1078 308 83 21 0 chr9 64689219 64689267 -59386905 + (TATG)n Simple_repeat Simple_repeat 2 50 0 5 1078 378 320 15 17 chr9 64689290 64689436 -59386736 - RSINE1 SINE B4 -148 144 2 5 1078 201 269 58 0 chr9 64689464 64689516 -59386656 - MIRc SINE MIR -142 126 72 5 1078 348 24 0 0 chr9 64689605 64689646 -59386526 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1078 23 0 0 0 chr9 64689856 64689879 -59386293 + AT_rich Low_complexity Low_complexity 1 23 0 5 1078 600 236 31 0 chr9 64690027 64690154 -59386018 - ID_B1 SINE B4 -11 213 83 5 1078 884 245 41 0 chr9 64691029 64691225 -59384947 + ID_B1 SINE B4 7 210 -14 5 1078 766 186 57 0 chr9 64691357 64691497 -59384675 - B1_Mus1 SINE Alu 0 148 1 5 1078 483 312 90 15 chr9 64691850 64692117 -59384055 + L2 LINE L2 2422 2708 -711 5 1078 506 168 93 0 chr9 64692136 64692243 -59383929 - PB1D9 SINE Alu -1 119 3 5 1078 576 62 0 0 chr9 64692251 64692332 -59383840 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1078 865 226 26 16 chr9 64692564 64692757 -59383415 + B3 SINE B2 1 195 -21 5 1078 540 282 39 33 chr9 64693100 64693280 -59382892 - B3A SINE B2 -16 182 2 5 1078 683 296 162 11 chr9 64693306 64693628 -59382544 - MER44B DNA MER2_type -74 476 99 5 1078 668 196 26 171 chr9 64693628 64693735 -59382437 + Lx8 LINE L1 7151 7222 -251 5 1078 1098 200 0 49 chr9 64693735 64693940 -59382232 - B3 SINE B2 -19 197 3 5 1078 668 196 26 171 chr9 64693940 64694066 -59382106 + Lx8 LINE L1 7223 7350 -123 5 1078 1256 14 0 0 chr9 64694444 64694585 -59381587 + B1_Mus2 SINE Alu 2 142 -5 5 1078 197 33 33 0 chr9 64694606 64694636 -59381536 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1078 302 293 121 8 chr9 64695226 64695350 -59380822 - B1F SINE Alu -11 138 1 5 1078 377 285 124 83 chr9 64695697 64695915 -59380257 + MIR SINE MIR 23 249 -13 5 1078 2517 196 65 0 chr9 64695976 64696516 -59379656 - Lx3C LINE L1 -2 6974 6400 5 1078 23 92 0 0 chr9 64697309 64697374 -59378798 + AT_rich Low_complexity Low_complexity 1 65 0 5 1078 972 46 0 0 chr9 64697842 64697972 -59378200 + (TCC)n Simple_repeat Simple_repeat 3 132 0 5 1078 743 172 47 0 chr9 64697974 64698102 -59378070 - B1_Mus2 SINE Alu -5 142 9 5 1078 205 51 51 0 chr9 64698130 64698169 -59378003 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 5 1078 1152 63 0 0 chr9 64698170 64698312 -59377860 - B1_Mus1 SINE Alu -5 143 2 5 1078 342 0 0 0 chr9 64698716 64698754 -59377418 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1078 318 287 11 11 chr9 64699585 64699673 -59376499 - MIR3 SINE MIR -23 185 98 5 1078 321 260 65 37 chr9 64699766 64699874 -59376298 - PB1D7 SINE Alu -2 118 8 5 1078 221 253 43 65 chr9 64699795 64699888 -59376284 - ID_B1 SINE B4 -53 171 81 5 1078 298 244 75 43 chr9 64699976 64700070 -59376102 + B1F SINE Alu 21 117 -32 5 1078 1241 28 0 0 chr9 64700505 64700648 -59375524 + B1_Mus1 SINE Alu 5 147 -1 5 1078 460 179 0 40 chr9 64700682 64700781 -59375391 + B1_Mur2 SINE Alu 50 144 -5 5 1078 226 356 27 0 chr9 64701056 64701129 -59375043 - BC1_Mm scRNA scRNA -69 83 9 5 1078 1693 259 111 25 chr9 64701529 64701767 -59374405 - Charlie1a DNA MER1_type -1 1454 1180 5 1078 4376 129 45 3 chr9 64701767 64702483 -59373689 - Lx2B LINE L1 -5 6995 6250 5 1078 1693 259 111 25 chr9 64702483 64702938 -59373234 - Charlie1a DNA MER1_type -276 1179 701 5 1078 651 222 32 89 chr9 64702957 64703115 -59373057 - RSINE1 SINE B4 0 165 17 5 1078 1386 301 93 80 chr9 64703237 64703665 -59372507 - Charlie1a DNA MER1_type -742 713 281 5 1078 1265 201 5 0 chr9 64703665 64703879 -59372293 - B3 SINE B2 -1 215 1 5 1078 1386 301 93 80 chr9 64703879 64704140 -59372032 - Charlie1a DNA MER1_type -1175 280 15 5 1078 342 269 109 6 chr9 64704473 64704584 -59371588 + PB1D10 SINE Alu 13 126 -21 5 1078 453 180 79 10 chr9 64704722 64704823 -59371349 - PB1 SINE Alu -19 108 1 5 1078 23 0 0 0 chr9 64704887 64704910 -59371262 + AT_rich Low_complexity Low_complexity 1 23 0 5 1078 926 66 16 0 chr9 64704985 64705107 -59371065 - B1_Mm SINE Alu 0 147 24 5 1078 279 0 0 0 chr9 64705715 64705746 -59370426 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1078 1265 27 0 0 chr9 64705746 64705893 -59370279 - B1_Mm SINE Alu 0 147 1 5 1078 615 221 39 0 chr9 64705911 64706038 -59370134 + B1F SINE Alu 18 149 0 5 1078 329 328 90 52 chr9 64706632 64706844 -59369328 - MER58A DNA MER1_type -1 223 4 5 1078 576 267 37 58 chr9 64707185 64707376 -59368796 - B3 SINE B2 -28 188 2 5 1078 892 163 7 0 chr9 64707663 64707804 -59368368 - B1_Mus1 SINE Alu -6 142 1 5 1078 594 310 76 57 chr9 64708174 64708387 -59367785 - L1MB7 LINE L1 -10 6174 5981 5 1078 432 0 0 0 chr9 64708387 64708435 -59367737 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1078 594 310 76 57 chr9 64708435 64708734 -59367438 - L1MB7 LINE L1 -204 5980 5652 5 1078 617 236 0 34 chr9 64709083 64709232 -59366940 + B1_Mur2 SINE Alu 5 148 -1 5 1078 311 296 28 9 chr9 64709351 64709460 -59366712 + PB1D10 SINE Alu 4 114 -3 5 1078 725 244 101 0 chr9 64710582 64710750 -59365422 + B3A SINE B2 1 185 -13 5 1078 292 260 14 0 chr9 64711229 64711302 -59364870 - ID4_ SINE ID -8 75 2 5 1078 1434 199 11 3 chr9 64711579 64711862 -59364310 - Lx5 LINE L1 0 7050 6766 5 1078 32 0 0 0 chr9 64711862 64711894 -59364278 + AT_rich Low_complexity Low_complexity 1 32 0 5 1078 360 0 0 0 chr9 64711989 64712029 -59364143 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 5 1078 970 99 35 0 chr9 64712030 64712172 -59364000 - B2_Mm2 SINE B2 -41 154 8 5 1078 6133 96 39 18 chr9 64712272 64713244 -59362928 - Lx LINE L1 0 6654 5662 5 1078 803 203 0 0 chr9 64713280 64713418 -59362754 + B1_Mur2 SINE Alu 1 138 -11 5 1078 1219 41 0 0 chr9 64713837 64713983 -59362189 + B1_Mus1 SINE Alu 2 147 -1 5 1078 531 0 0 0 chr9 64713983 64714042 -59362130 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1078 22 35 0 0 chr9 64714603 64714632 -59361540 + AT_rich Low_complexity Low_complexity 1 29 0 5 1078 572 290 27 14 chr9 64715899 64716046 -59360126 + B1F1 SINE Alu 1 149 0 5 1078 401 307 43 28 chr9 64716072 64716213 -59359959 + B1F1 SINE Alu 1 143 -6 5 1078 631 171 108 0 chr9 64716247 64716376 -59359796 + B1_Mur2 SINE Alu 1 143 -6 5 1078 185 224 0 17 chr9 64716385 64716444 -59359728 + GA-rich Low_complexity Low_complexity 3 60 0 5 1078 216 97 0 0 chr9 64717027 64717058 -59359114 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1078 1147 71 0 0 chr9 64717316 64717457 -59358715 + B1_Mus1 SINE Alu 2 142 -6 5 1078 260 154 19 0 chr9 64717459 64717511 -59358661 + GA-rich Low_complexity Low_complexity 3 55 0 5 1078 209 161 0 0 chr9 64717511 64717542 -59358630 + polypurine Low_complexity Low_complexity 3 33 0 5 1078 421 287 43 86 chr9 64717796 64718097 -59358075 - B4 SINE B4 0 292 5 5 1078 747 263 113 30 chr9 64718412 64718643 -59357529 - B4A SINE B4 -41 251 2 5 1078 544 214 230 15 chr9 64718767 64718923 -59357249 + B3 SINE B2 37 210 -6 5 1078 425 214 65 57 chr9 64720117 64720241 -59355931 - Charlie17a DNA MER1_type -90 129 5 5 1078 182 349 108 0 chr9 64720333 64720416 -59355756 - L2a LINE L2 -39 3387 3296 5 1078 243 290 56 28 chr9 64721175 64721246 -59354926 - RSINE1 SINE B4 -81 84 12 5 1078 839 235 52 68 chr9 64721275 64721467 -59354705 - B3A SINE B2 -6 189 1 5 1078 460 169 33 5 chr9 64721512 64721615 -59354557 + PB1D9 SINE Alu 40 149 0 5 1078 381 284 195 12 chr9 64722550 64722714 -59353458 + L1MC4 LINE L1 6643 6836 -1206 5 1078 1283 236 119 3 chr9 64722714 64723049 -59353123 - MTE2b LTR MaLR -5 374 1 6 1078 222 184 205 84 chr9 64723068 64723151 -59353021 - B3A SINE B2 -105 93 1 6 1078 22 0 0 0 chr9 64723157 64723179 -59352993 + AT_rich Low_complexity Low_complexity 1 22 0 6 1078 297 0 0 0 chr9 64723290 64723323 -59352849 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 6 1078 1245 96 0 0 chr9 64723324 64723502 -59352670 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 1078 217 233 0 0 chr9 64723999 64724042 -59352130 + B3A SINE B2 34 76 -122 6 1078 1274 239 103 55 chr9 64724058 64724154 -59352018 - RLTR20A1 LTR ERVK 0 551 457 6 1078 498 57 0 0 chr9 64724154 64724224 -59351948 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1078 1274 239 103 55 chr9 64724224 64724653 -59351519 - RLTR20A1 LTR ERVK -95 456 3 6 1078 446 283 94 51 chr9 64726185 64726557 -59349615 - HAL1 LINE L1 -960 1547 1160 6 1078 5306 201 68 11 chr9 64726564 64726691 -59349481 - Lx9 LINE L1 -4 7640 7483 6 1078 237 33 0 0 chr9 64726691 64726721 -59349451 + (TGG)n Simple_repeat Simple_repeat 3 32 0 6 1078 5306 201 68 11 chr9 64726721 64727745 -59348427 - Lx9 LINE L1 -162 7482 6425 6 1078 251 266 353 0 chr9 64727747 64727860 -59348312 - B4A SINE B4 -138 154 2 6 1078 3179 218 200 36 chr9 64728000 64729328 -59346844 - RMER1A Other Other -15 1015 1 6 1078 207 163 20 20 chr9 64729832 64729882 -59346290 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 6 1078 6543 91 34 35 chr9 64729909 64731308 -59344864 - L1_Mus3 LINE L1 -3 6635 5239 6 1078 6280 133 27 11 chr9 64731305 64732982 -59343190 - L1_Mus3 LINE L1 -3770 2113 409 6 1078 1387 80 0 6 chr9 64732986 64733163 -59343009 - B2_Mm2 SINE B2 -18 177 2 6 1078 212 86 0 28 chr9 64733308 64733344 -59342828 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6 1078 1124 76 14 0 chr9 64733344 64733489 -59342683 - B1_Mus1 SINE Alu 0 148 2 6 1078 614 177 53 9 chr9 64734352 64734466 -59341706 + PB1D9 SINE Alu 1 119 -1 6 1078 369 0 0 0 chr9 64735750 64735791 -59340381 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1078 566 144 163 41 chr9 64735791 64735914 -59340258 - B1_Mus2 SINE Alu -8 139 2 6 1078 551 177 160 65 chr9 64737645 64737814 -59338358 + B2_Mm2 SINE B2 2 186 -9 6 1078 204 40 0 0 chr9 64738384 64738409 -59337763 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1078 936 45 7 56 chr9 64738409 64738551 -59337621 - B1_Mus1 SINE Alu 0 148 14 6 1078 271 233 137 0 chr9 64738871 64738944 -59337228 - ID4 SINE ID 0 83 1 6 1078 286 299 62 49 chr9 64739002 64739164 -59337008 + L1MC4a LINE L1 7713 7876 -6 6 1078 429 279 30 37 chr9 64739235 64739399 -59336773 + RSINE1 SINE B4 3 165 0 6 1078 448 173 106 0 chr9 64740099 64740203 -59335969 - PB1D9 SINE Alu -4 116 2 6 1078 769 173 64 7 chr9 64740430 64740570 -59335602 + B1_Mur1 SINE Alu 2 149 0 6 1078 1538 147 162 8 chr9 64741528 64741885 -59334287 - MTC LTR MaLR 0 421 10 6 1078 218 359 16 0 chr9 64742409 64742473 -59333699 - RSINE1 SINE B4 -99 66 2 6 1078 507 232 28 21 chr9 64742793 64742934 -59333238 + B1_Mur2 SINE Alu 8 149 0 6 1078 22 0 0 0 chr9 64742964 64742986 -59333186 + AT_rich Low_complexity Low_complexity 1 22 0 6 1078 216 0 0 0 chr9 64743114 64743138 -59333034 + (GTTTG)n Simple_repeat Simple_repeat 4 27 0 6 1078 2829 42 36 19 chr9 64743223 64743584 -59332588 - L1_Mus1 LINE L1 -4 6563 6197 6 1078 298 88 376 9 chr9 64743666 64743775 -59332397 + B2_Mm2 SINE B2 47 195 0 6 1078 238 381 16 16 chr9 64743826 64743954 -59332218 + MIR SINE MIR 2 129 -133 6 1078 1458 65 16 0 chr9 64745369 64745553 -59330619 - B2_Mm2 SINE B2 -8 187 1 6 1078 652 257 13 44 chr9 64745569 64745728 -59330444 - B3A SINE B2 -18 180 27 6 1078 309 320 48 0 chr9 64745808 64745911 -59330261 + L1MEf LINE L1 7 114 -6121 6 1078 2757 214 84 23 chr9 64746111 64746774 -59329398 - MERVL_2A-int LTR ERVL -4182 1579 876 6 1078 257 233 158 40 chr9 64746833 64746909 -59329263 + L1MEf LINE L1 386 470 -5765 6 1078 231 254 29 15 chr9 64746994 64747062 -59329110 + ID4 SINE ID 2 70 -13 6 1078 264 348 170 0 chr9 64747095 64747236 -59328936 + L1MEf LINE L1 538 702 -5533 6 1078 393 268 116 83 chr9 64747252 64747553 -59328619 + L1MEf LINE L1 1900 2210 -5123 6 1078 662 225 57 52 chr9 64747558 64747750 -59328422 + B4 SINE B4 11 203 -89 6 1078 925 196 169 0 chr9 64747893 64748153 -59328019 - MTD LTR MaLR -95 324 21 6 1078 744 115 15 0 chr9 64748673 64748803 -59327369 + BC1_Mm scRNA scRNA 1 132 -20 6 1078 344 0 65 0 chr9 64749098 64749144 -59327028 + (ATGGTG)n Simple_repeat Simple_repeat 4 52 0 6 1078 488 260 38 38 chr9 64749152 64749284 -59326888 + ID_B1 SINE B4 86 217 -7 6 134 220 315 0 0 chr9 64749523 64749577 -59326595 + ID4_ SINE ID 1 54 -29 6 1079 751 280 43 0 chr9 64749628 64749835 -59326337 + B3 SINE B2 1 216 0 6 1079 351 312 52 24 chr9 64749849 64750059 -59326113 + L1MEf LINE L1 2168 2383 -4950 6 1079 355 278 141 16 chr9 64750062 64750190 -59325982 + RSINE1 SINE B4 1 144 -21 6 1079 225 0 0 0 chr9 64750303 64750328 -59325844 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 1079 838 164 0 0 chr9 64750328 64750462 -59325710 - B1_Mus1 SINE Alu -13 135 2 6 1079 493 285 107 15 chr9 64750486 64750757 -59325415 + L1MEf LINE L1 2463 2758 -4575 6 1079 236 286 150 8 chr9 64750869 64750996 -59325176 + RSINE1 SINE B4 2 146 -19 6 1079 25 65 0 0 chr9 64751014 64751060 -59325112 + AT_rich Low_complexity Low_complexity 1 46 0 6 1079 460 266 161 36 chr9 64751297 64751465 -59324707 + B3 SINE B2 17 205 -11 6 1079 735 281 40 10 chr9 64751501 64751702 -59324470 + B4 SINE B4 80 286 -6 6 1079 21 0 0 0 chr9 64751901 64751922 -59324250 + AT_rich Low_complexity Low_complexity 1 21 0 6 1079 2484 70 0 24 chr9 64752373 64752710 -59323462 + L1Md_F2 LINE L1 6252 6580 -2 6 1079 606 251 31 12 chr9 64753110 64753271 -59322901 + RSINE1 SINE B4 2 165 0 6 1079 679 176 20 34 chr9 64753488 64753635 -59322537 + B1_Mur4 SINE Alu 5 149 -1 6 1079 366 159 0 0 chr9 64755230 64755299 -59320873 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 6 1079 658 218 207 0 chr9 64755353 64755532 -59320640 - B3 SINE B2 0 216 1 6 1079 527 278 38 19 chr9 64755692 64755850 -59320322 - ID_B1 SINE B4 -4 220 60 6 1079 1934 204 8 20 chr9 64756050 64756451 -59319721 - RMER10B LTR ERVL -2 396 1 6 1079 512 166 0 7 chr9 64756662 64756802 -59319370 + CT-rich Low_complexity Low_complexity 2 140 0 6 1079 842 190 0 11 chr9 64757106 64757287 -59318885 + CT-rich Low_complexity Low_complexity 2 180 0 6 1079 336 214 43 0 chr9 64758425 64758495 -59317677 - ID SINE ID -149 75 3 6 1079 217 275 49 12 chr9 64758513 64758594 -59317578 - RSINE1 SINE B4 -4 161 78 6 1079 2099 157 56 3 chr9 64759037 64759427 -59316745 + MTD LTR MaLR 1 411 -8 6 1079 198 0 0 0 chr9 64760941 64760963 -59315209 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1079 688 185 62 0 chr9 64760963 64761093 -59315079 - B1_Mus1 SINE Alu -9 139 2 6 1079 486 264 8 8 chr9 64761225 64761347 -59314825 + RSINE1 SINE B4 3 124 -41 6 1079 622 234 31 25 chr9 64761355 64761517 -59314655 + RSINE1 SINE B4 3 165 0 6 1079 748 209 33 42 chr9 64761569 64761784 -59314388 + B3 SINE B2 4 216 0 6 1079 219 320 192 0 chr9 64761795 64761873 -59314299 - B3A SINE B2 -105 93 1 6 1079 189 0 0 0 chr9 64762176 64762197 -59313975 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1079 776 49 0 0 chr9 64762197 64762299 -59313873 - B1_Mus2 SINE Alu 0 147 46 6 1079 29 0 0 0 chr9 64762361 64762390 -59313782 + AT_rich Low_complexity Low_complexity 1 29 0 6 1079 423 291 138 23 chr9 64762669 64762887 -59313285 + L1MB7 LINE L1 5868 6110 -74 6 1079 254 266 177 27 chr9 64763260 64763407 -59312765 - LTR84b LTR ERVL -62 699 531 6 1079 217 326 11 34 chr9 64763560 64763589 -59312583 + B4A SINE B4 59 85 -207 6 1079 417 234 42 9 chr9 64763589 64763719 -59312453 + B1F SINE Alu 1 132 -15 6 1079 428 295 64 7 chr9 64763933 64764073 -59312099 + B1F SINE Alu 2 149 0 6 1079 21 36 0 0 chr9 64764154 64764182 -59311990 + AT_rich Low_complexity Low_complexity 1 28 0 6 1079 216 295 12 93 chr9 64764255 64764341 -59311831 - ID4 SINE ID -1 82 4 6 1079 235 167 49 111 chr9 64764350 64764431 -59311741 - PB1D10 SINE Alu -5 112 37 6 1079 29 0 0 0 chr9 64765343 64765372 -59310800 + AT_rich Low_complexity Low_complexity 1 29 0 6 1079 21 0 0 0 chr9 64768440 64768461 -59307711 + AT_rich Low_complexity Low_complexity 1 21 0 6 1079 270 81 0 0 chr9 64768701 64768738 -59307434 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1079 360 316 114 7 chr9 64768787 64768927 -59307245 + B3A SINE B2 27 181 -17 6 1079 339 25 0 0 chr9 64768930 64768970 -59307202 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1079 1092 147 53 0 chr9 64768971 64769161 -59307011 + URR1B DNA MER1_type 26 225 0 6 1079 320 138 15 0 chr9 64769205 64769270 -59306902 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1079 697 269 29 0 chr9 64769295 64769470 -59306702 + B3A SINE B2 1 180 -18 6 1079 1234 86 41 41 chr9 64769573 64769767 -59306405 - B2_Mm2 SINE B2 0 195 2 6 1079 509 312 58 25 chr9 64770145 64770385 -59305787 + B4A SINE B4 41 288 -4 6 1079 862 27 0 0 chr9 64770460 64770570 -59305602 - B1_Mus1 SINE Alu 0 148 39 6 1079 244 240 25 126 chr9 64771034 64771072 -59305100 + MT2B LTR ERVL 134 159 -442 6 1079 424 225 53 6 chr9 64771072 64771178 -59304994 + B1_Mur2 SINE Alu 1 114 -13 6 1079 201 147 0 0 chr9 64772859 64772893 -59303279 + (CCCCCA)n Simple_repeat Simple_repeat 4 37 0 6 1079 342 0 0 0 chr9 64773015 64773053 -59303119 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1079 1033 121 0 0 chr9 64773093 64773250 -59302922 + B2_Mm2 SINE B2 2 158 -37 7 1079 198 0 51 51 chr9 64773251 64773290 -59302882 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 7 1079 304 91 327 44 chr9 64773341 64773454 -59302718 + B2_Mm2 SINE B2 47 191 -4 7 1079 381 167 0 0 chr9 64775872 64775950 -59300222 + CT-rich Low_complexity Low_complexity 2 79 0 7 1079 285 311 0 0 chr9 64776101 64776478 -59299694 + CT-rich Low_complexity Low_complexity 1 377 0 7 1079 225 343 123 5 chr9 64776663 64776874 -59299298 - L3 LINE CR1 -75 4414 4179 7 1079 267 323 134 0 chr9 64777261 64777388 -59298784 - MIR SINE MIR -112 150 7 7 1079 180 286 48 0 chr9 64777433 64777496 -59298676 + MER5A DNA MER1_type 49 114 -75 7 1079 759 223 0 0 chr9 64777619 64777767 -59298405 - B1_Mur3 SINE Alu 0 149 2 7 1079 215 297 67 13 chr9 64777822 64777897 -59298275 + MER5B DNA MER1_type 97 175 -3 7 1079 336 281 9 67 chr9 64779476 64779581 -59296591 + MIRc SINE MIR 82 183 -93 7 1079 243 242 75 15 chr9 64780224 64780291 -59295881 + MIR SINE MIR 45 115 -93 7 1079 193 175 100 0 chr9 64780479 64780519 -59295653 + MIR3 SINE MIR 150 193 -15 7 1079 254 306 42 75 chr9 64781121 64781241 -59294931 + MIR SINE MIR 25 140 -122 7 1079 188 257 0 0 chr9 64781425 64781460 -59294712 - MIR3 SINE MIR -20 188 154 7 1079 180 111 0 0 chr9 64783259 64783286 -59292886 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 7 1079 188 291 36 18 chr9 64783445 64783501 -59292671 - MIR SINE MIR -117 145 89 7 1079 211 208 21 0 chr9 64784527 64784575 -59291597 + C-rich Low_complexity Low_complexity 2 50 0 7 1079 180 111 0 0 chr9 64785319 64785346 -59290826 + (TCC)n Simple_repeat Simple_repeat 3 29 0 7 1079 975 139 22 55 chr9 64785415 64785598 -59290574 - B2_Mm2 SINE B2 -18 177 1 7 1079 540 203 83 38 chr9 64786100 64786233 -59289939 - B1F SINE Alu -6 143 5 7 1079 363 78 0 0 chr9 64786245 64786296 -59289876 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 7 1079 363 121 0 0 chr9 64787404 64787462 -59288710 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1079 364 209 45 31 chr9 64787462 64787558 -59288614 - RSINE1 SINE B4 -41 124 26 7 1079 210 105 0 0 chr9 64787558 64787596 -59288576 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1079 534 280 8 8 chr9 64787600 64787726 -59288446 - B3 SINE B2 -6 210 85 7 1079 1346 86 37 0 chr9 64787860 64788047 -59288125 - B2_Mm2 SINE B2 -1 194 1 7 1079 533 185 28 9 chr9 64788176 64788285 -59287887 - PB1D9 SINE Alu -8 112 2 7 1079 473 294 75 105 chr9 64788309 64788324 -59287848 - ID_B1 SINE B4 -2 222 194 7 1079 695 164 16 41 chr9 64788324 64788445 -59287727 - B1_Mur4 SINE Alu -32 118 1 7 1079 473 294 75 105 chr9 64788445 64788537 -59287635 - ID_B1 SINE B4 -2 193 2 7 1079 263 253 55 92 chr9 64788935 64789044 -59287128 + Arthur1A DNA Tip100 54 158 -19 7 1079 1318 290 48 17 chr9 64789503 64789857 -59286315 + Tigger7 DNA MER2_type 20 384 -2107 7 1079 213 309 50 30 chr9 64790018 64790118 -59286054 + L2 LINE L2 2742 2843 -576 7 1079 450 191 11 33 chr9 64790450 64790542 -59285630 - Charlie22a DNA MER1_type -6 485 396 7 1079 360 0 0 0 chr9 64790838 64790878 -59285294 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1079 588 93 0 0 chr9 64790878 64790975 -59285197 + (GA)n Simple_repeat Simple_repeat 2 98 0 7 1079 219 212 224 15 chr9 64791582 64791649 -59284523 + RSINE1 SINE B4 4 84 -81 7 1079 902 129 14 35 chr9 64792397 64792541 -59283631 - B1_Mur4 SINE Alu -1 149 9 7 1079 447 260 30 110 chr9 64792402 64792566 -59283606 - B4 SINE B4 -72 220 70 7 1079 349 259 24 0 chr9 64792576 64792661 -59283511 - MIRc SINE MIR -111 157 71 7 1079 200 233 0 0 chr9 64793612 64793655 -59282517 + T-rich Low_complexity Low_complexity 1 43 0 7 1079 203 138 0 0 chr9 64793624 64793653 -59282519 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 7 1079 1106 83 0 7 chr9 64793655 64793800 -59282372 - B1_Mus1 SINE Alu 0 148 5 7 1079 237 346 90 19 chr9 64793854 64794010 -59282162 - MamRep434 DNA TcMar -73 353 187 7 1079 185 271 196 0 chr9 64794330 64794437 -59281735 + MIRm SINE MIR 2 129 -147 7 1079 264 331 83 33 chr9 64794510 64794699 -59281473 - MIR3 SINE MIR -10 198 5 7 1079 369 365 7 21 chr9 64795340 64795480 -59280692 + MIRb SINE MIR 44 181 -87 7 1079 203 317 135 0 chr9 64798111 64798215 -59277957 + MIRc SINE MIR 8 125 -143 7 1079 1037 245 24 5 chr9 64798372 64798581 -59277591 - ID_B1 SINE B4 -8 216 4 7 1079 1568 118 106 96 chr9 64799991 64800396 -59275776 + RMER17C LTR ERVK 1 409 -1 7 1079 240 290 52 41 chr9 64801146 64801243 -59274929 + MIR SINE MIR 132 229 -33 7 1079 275 328 21 69 chr9 64801337 64801481 -59274691 + L2a LINE L2 3247 3383 -43 7 1079 225 344 36 86 chr9 64801484 64801624 -59274548 + MT2B LTR ERVL 121 253 -348 7 1079 693 223 0 23 chr9 64801540 64801673 -59274499 + ID_B1 SINE B4 95 224 0 7 1079 1946 124 64 58 chr9 64802024 64802384 -59273788 + ORR1D1 LTR MaLR 5 366 -8 7 1079 408 286 72 55 chr9 64802847 64803028 -59273144 + B3A SINE B2 1 184 -14 7 1079 28 48 0 0 chr9 64803037 64803079 -59273093 + AT_rich Low_complexity Low_complexity 1 42 0 7 1079 600 250 9 0 chr9 64803104 64803220 -59272952 - RSINE1 SINE B4 -21 144 28 7 1079 252 38 18 71 chr9 64803238 64803294 -59272878 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 7 1079 1212 48 0 7 chr9 64803294 64803442 -59272730 - B1_Mus1 SINE Alu 0 148 2 7 1079 957 77 54 0 chr9 64803502 64803632 -59272540 + MTC LTR MaLR 1 137 -284 7 1079 510 220 0 7 chr9 64803629 64803751 -59272421 - B3A SINE B2 -78 117 1 7 1079 1083 88 0 51 chr9 64803789 64803945 -59272227 + B1_Mus1 SINE Alu 1 148 0 7 1079 637 279 121 8 chr9 64804512 64804769 -59271403 + B4A SINE B4 1 286 -6 7 1079 429 224 246 17 chr9 64804964 64805082 -59271090 + B3 SINE B2 1 145 -71 7 1079 513 299 38 19 chr9 64805100 64805260 -59270912 + B4A SINE B4 128 290 -2 7 1079 312 83 0 0 chr9 64805326 64805374 -59270798 + (T)n Simple_repeat Simple_repeat 1 48 0 7 1079 1145 96 0 0 chr9 64805378 64805524 -59270648 - B1_Mus1 SINE Alu -1 147 2 7 1079 351 258 83 0 chr9 64805529 64805661 -59270511 + L1MC5 LINE L1 7699 7841 -120 7 1079 416 250 127 17 chr9 64805740 64805858 -59270314 - B1_Mur2 SINE Alu -18 131 1 7 1079 845 234 45 36 chr9 64805862 64806084 -59270088 - ID_B1 SINE B4 0 224 1 7 1079 1534 58 21 0 chr9 64806255 64806444 -59269728 + B2_Mm1t SINE B2 1 193 0 7 1079 1184 69 0 0 chr9 64807134 64807279 -59268893 + B1_Mus2 SINE Alu 2 146 -1 7 1079 195 42 0 0 chr9 64807281 64807305 -59268867 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1079 31 0 0 0 chr9 64810088 64810119 -59266053 + AT_rich Low_complexity Low_complexity 1 31 0 7 1079 1178 56 0 0 chr9 64810119 64810263 -59265909 - B1_Mus1 SINE Alu 0 148 5 7 1079 832 181 85 37 chr9 64810507 64810696 -59265476 + B3A SINE B2 1 198 0 7 1079 310 260 35 16 chr9 64810836 64810947 -59265225 + Tigger16b DNA Tigger 179 294 -43 7 1079 529 242 83 0 chr9 64811084 64811204 -59264968 - ID_B1 SINE B4 0 224 95 7 1079 600 246 92 0 chr9 64811208 64811338 -59264834 - B1_Mur2 SINE Alu -6 143 2 7 1079 1368 41 6 0 chr9 64811918 64812088 -59264084 + B2_Mm2 SINE B2 1 171 -24 7 1079 1137 70 0 0 chr9 64812686 64812829 -59263343 - B1_Mus1 SINE Alu -4 144 2 7 1079 636 243 33 39 chr9 64813197 64813377 -59262795 + B3A SINE B2 2 180 -18 7 1079 332 265 81 10 chr9 64813493 64813592 -59262580 - PB1D10 SINE Alu -9 108 3 7 1079 234 341 110 8 chr9 64813683 64813810 -59262362 + MIR SINE MIR 17 156 -106 7 1079 1402 98 10 0 chr9 64813946 64814139 -59262033 + B2_Mm2 SINE B2 1 195 0 7 1079 189 0 0 0 chr9 64814315 64814336 -59261836 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 7 1079 1094 67 0 0 chr9 64814336 64814470 -59261702 - B1_Mus1 SINE Alu -13 135 2 7 1079 314 279 0 12 chr9 64814714 64814794 -59261378 + ID4_ SINE ID 4 82 -1 7 1079 517 240 30 0 chr9 64815577 64815677 -59260495 + PB1D7 SINE Alu 18 120 0 7 1079 218 67 0 0 chr9 64815688 64815718 -59260454 + B3A SINE B2 7 36 -162 7 1079 456 199 149 14 chr9 64815700 64815841 -59260331 + B3 SINE B2 47 214 -2 7 1079 773 257 16 36 chr9 64815868 64816062 -59260110 + B3 SINE B2 14 203 -13 7 1079 460 221 111 59 chr9 64816483 64816618 -59259554 + B3A SINE B2 1 142 -56 7 1079 1754 111 116 17 chr9 64816622 64816915 -59259257 - ORR1A4 LTR MaLR -1 328 7 7 1079 329 110 355 18 chr9 64817199 64817309 -59258863 - B2_Mm2 SINE B2 -2 193 47 7 1079 1308 27 0 0 chr9 64817394 64817541 -59258631 + B1_Mm SINE Alu 1 147 0 7 1079 181 312 0 30 chr9 64817882 64817948 -59258224 + L3 LINE CR1 2533 2596 -1893 7 1079 1448 39 39 17 chr9 64817951 64818132 -59258040 - B2_Mm1t SINE B2 -8 185 1 7 1079 1351 70 48 5 chr9 64818226 64818412 -59257760 + B2_Mm2 SINE B2 1 194 -1 7 1079 648 60 0 0 chr9 64818519 64818603 -59257569 + B1_Mur4 SINE Alu 67 150 0 7 1079 773 189 7 20 chr9 64818708 64818859 -59257313 + B1_Mur1 SINE Alu 1 149 0 7 1079 209 161 0 0 chr9 64818860 64818891 -59257281 + (TTG)n Simple_repeat Simple_repeat 3 33 0 8 1079 1482 241 113 22 chr9 64818946 64819464 -59256708 + Lx8 LINE L1 6947 7472 -1 8 1079 1183 81 0 0 chr9 64819472 64819620 -59256552 + B1_Mus1 SINE Alu 1 148 0 8 1079 243 218 0 0 chr9 64819690 64819745 -59256427 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 8 1079 204 312 134 8 chr9 64821424 64821574 -59254598 + MIRc SINE MIR 26 189 -19 8 1079 375 206 130 56 chr9 64822488 64822596 -59253576 - PB1D9 SINE Alu 0 120 5 8 1079 457 300 67 60 chr9 64822754 64823038 -59253134 - B4A SINE B4 -5 287 2 8 1079 372 236 202 11 chr9 64824213 64824307 -59251865 - PB1D7 SINE Alu -8 112 1 8 1079 394 285 37 89 chr9 64825022 64825157 -59251015 + B4 SINE B4 6 133 -159 8 1079 237 65 0 0 chr9 64825162 64825193 -59250979 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 8 1079 773 284 56 5 chr9 64825202 64825400 -59250772 + B4 SINE B4 81 288 -4 8 1079 721 189 0 64 chr9 64825480 64825621 -59250551 - B1_Mur3 SINE Alu -12 137 6 8 1079 276 242 21 52 chr9 64825632 64825728 -59250444 - L1MB7 LINE L1 -73 6111 6019 8 1079 325 284 22 22 chr9 64826319 64826409 -59249763 - PB1D10 SINE Alu -3 114 25 8 1079 239 314 65 56 chr9 64826372 64826480 -59249692 - B4 SINE B4 -146 146 38 8 1079 216 235 19 19 chr9 64826445 64826497 -59249675 - B3 SINE B2 -139 77 26 8 1079 323 281 52 11 chr9 64826542 64826676 -59249496 - MIRb SINE MIR -46 162 30 8 1079 21 0 0 0 chr9 64826913 64826934 -59249238 + AT_rich Low_complexity Low_complexity 1 21 0 8 1079 314 154 13 0 chr9 64827311 64827389 -59248783 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1079 232 312 61 26 chr9 64828079 64828194 -59247978 - ORR1E LTR MaLR -121 238 120 8 1079 475 209 66 9 chr9 64829057 64829163 -59247009 + ID_B1 SINE B4 4 115 -109 8 1079 228 247 0 0 chr9 64829226 64829311 -59246861 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 1079 26 0 0 0 chr9 64829392 64829418 -59246754 + AT_rich Low_complexity Low_complexity 1 26 0 8 1079 370 329 47 56 chr9 64829982 64830284 -59245888 - L4 LINE RTE 0 2029 1695 8 1079 613 319 25 0 chr9 64830294 64830457 -59245715 - ID_B1 SINE B4 -1 223 57 8 1079 315 0 0 0 chr9 64830466 64830501 -59245671 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1079 792 130 32 16 chr9 64830502 64830627 -59245545 - B1_Mus1 SINE Alu -20 128 2 8 1079 330 250 16 143 chr9 64830517 64830643 -59245529 - MT2B LTR ERVL -337 264 155 8 1079 285 236 485 41 chr9 64830647 64830861 -59245311 - Lx8 LINE L1 -4 7469 7161 8 1079 1018 73 22 0 chr9 64830894 64831030 -59245142 + B1_Mus1 SINE Alu 3 141 -7 8 1079 525 214 16 62 chr9 64831098 64831251 -59244921 - B1_Mur3 SINE Alu -11 138 1 8 1079 220 121 0 0 chr9 64831410 64831443 -59244729 - B3A SINE B2 -164 34 2 8 1079 885 47 15 23 chr9 64832318 64832450 -59243722 + (GGAAA)n Simple_repeat Simple_repeat 4 134 0 8 1079 274 197 64 14 chr9 64832450 64832522 -59243650 - B1F2 SINE Alu -14 135 53 8 1079 643 214 185 11 chr9 64832620 64832804 -59243368 + B3 SINE B2 1 216 0 8 1079 899 145 7 20 chr9 64835289 64835437 -59240735 + B1_Mur3 SINE Alu 4 149 0 8 1079 204 249 93 0 chr9 64836884 64836956 -59239216 + MIRb SINE MIR 104 172 -96 8 1079 530 242 0 0 chr9 64837148 64837247 -59238925 - PB1D7 SINE Alu -15 105 7 8 1079 295 301 10 70 chr9 64837171 64837271 -59238901 - B4 SINE B4 -125 167 74 8 1079 261 274 47 12 chr9 64838427 64838512 -59237660 + MIRc SINE MIR 117 204 -64 8 1079 525 215 28 9 chr9 64839185 64839293 -59236879 + PB1D9 SINE Alu 3 112 -8 8 1079 391 233 96 3 chr9 64839569 64839694 -59236478 - PB1D7 SINE Alu -2 147 10 8 1079 435 212 121 0 chr9 64840546 64840645 -59235527 - RSINE1 SINE B4 -53 112 2 8 1079 714 292 16 0 chr9 64841390 64841582 -59234590 - B3A SINE B2 0 198 4 8 1079 672 211 0 0 chr9 64841771 64841885 -59234287 - PB1D9 SINE Alu -5 115 2 8 1079 880 296 49 0 chr9 64841900 64842187 -59233985 - L1MB3 LINE L1 -62 6121 5821 8 1079 1084 88 13 13 chr9 64842193 64842342 -59233830 + B1_Mur4 SINE Alu 2 150 0 8 1079 319 302 65 32 chr9 64842397 64842520 -59233652 + L1MEg LINE L1 760 886 -5198 8 1079 1555 38 21 0 chr9 64842581 64842767 -59233405 + B2_Mm1a SINE B2 2 191 -2 8 1079 566 130 19 57 chr9 64842982 64843088 -59233084 - B1_Mur4 SINE Alu 0 150 49 8 1079 1374 71 5 21 chr9 64843350 64843536 -59232636 - B2_Mm2 SINE B2 -9 186 4 8 1079 578 128 214 63 chr9 64843548 64843707 -59232465 - B2_Mm2 SINE B2 -11 184 2 8 1079 482 298 199 0 chr9 64843708 64843869 -59232303 - B3A SINE B2 -5 193 1 8 1079 275 338 12 0 chr9 64844003 64844083 -59232089 - PB1D10 SINE Alu -1 116 36 8 1079 237 33 0 0 chr9 64844887 64844917 -59231255 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 8 1079 369 109 0 0 chr9 64844927 64844982 -59231190 + (T)n Simple_repeat Simple_repeat 1 55 0 8 1079 1235 34 0 13 chr9 64844982 64845131 -59231041 - B1_Mus2 SINE Alu 0 147 1 8 1079 189 0 0 0 chr9 64845370 64845391 -59230781 + (CCTG)n Simple_repeat Simple_repeat 2 22 0 8 1079 552 201 102 22 chr9 64845704 64845841 -59230331 + B1_Mur3 SINE Alu 2 149 0 8 1079 638 253 5 68 chr9 64846523 64846714 -59229458 + B3A SINE B2 3 181 -17 8 1079 692 166 171 33 chr9 64846770 64846951 -59229221 - B3 SINE B2 -10 206 1 8 1079 812 55 0 18 chr9 64847121 64847231 -59228941 - B1_Mus2 SINE Alu 0 147 40 8 1079 292 158 17 17 chr9 64847179 64847237 -59228935 - 4.5SRNA scRNA scRNA -6 88 31 8 1079 1490 68 16 5 chr9 64847253 64847445 -59228727 + B2_Mm2 SINE B2 1 194 -1 8 1079 219 88 0 0 chr9 64847649 64847683 -59228489 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1079 479 279 64 0 chr9 64847685 64847825 -59228347 - RSINE1 SINE B4 -14 151 3 8 1079 274 145 92 0 chr9 64848647 64848723 -59227449 + (CAGGG)n Simple_repeat Simple_repeat 2 84 0 8 1079 581 144 28 0 chr9 64849902 64850011 -59226161 + B1_Mur1 SINE Alu 17 141 -8 8 1079 478 198 6 23 chr9 64850035 64850211 -59225961 + (CACCAT)n Simple_repeat Simple_repeat 4 176 0 8 1079 630 185 11 11 chr9 64850222 64850402 -59225770 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 8 1079 1239 28 0 7 chr9 64850661 64850806 -59225366 - B1_Mus2 SINE Alu 0 147 4 8 1079 388 264 8 91 chr9 64851296 64851310 -59224862 + MT2B LTR ERVL 153 156 -445 8 1079 663 188 0 0 chr9 64851310 64851422 -59224750 + B1_Mur1 SINE Alu 3 114 -35 8 1079 600 14 0 0 chr9 64851434 64851503 -59224669 + (TAAAA)n Simple_repeat Simple_repeat 2 70 0 8 1079 717 274 39 0 chr9 64851512 64851691 -59224481 + B3 SINE B2 1 186 -30 8 1079 210 37 0 0 chr9 64852414 64852441 -59223731 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 8 1079 703 284 247 24 chr9 64852465 64852606 -59223566 + L1MC3 LINE L1 6546 6717 -1068 8 1079 480 136 553 0 chr9 64852606 64852738 -59223434 + B3 SINE B2 2 206 -10 8 1079 703 284 247 24 chr9 64852738 64853130 -59223042 + L1MC3 LINE L1 6718 7197 -588 8 1079 198 238 87 87 chr9 64854069 64854161 -59222011 - MIR3 SINE MIR -2 206 115 8 1079 256 244 0 22 chr9 64854701 64854793 -59221379 + GA-rich Low_complexity Low_complexity 2 91 0 8 1079 240 261 43 0 chr9 64854902 64854971 -59221201 + ID4_ SINE ID 2 73 -10 8 1079 241 184 20 20 chr9 64854978 64855021 -59221151 + polypurine Low_complexity Low_complexity 3 46 0 8 1079 1193 101 6 0 chr9 64855021 64855200 -59220972 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 8 1079 3370 25 7 25 chr9 64855238 64855645 -59220527 + MTB LTR MaLR 1 400 0 8 1079 447 329 43 12 chr9 64856130 64856293 -59219879 + ID_B1 SINE B4 57 224 0 8 1079 420 69 0 0 chr9 64856293 64856305 -59219867 + (A)n Simple_repeat Simple_repeat 1 12 0 8 1079 1237 61 0 0 chr9 64856305 64856452 -59219720 + B1_Mm SINE Alu 1 147 0 8 1079 420 69 0 0 chr9 64856452 64856497 -59219675 + (A)n Simple_repeat Simple_repeat 1 45 0 8 1079 401 240 38 9 chr9 64856680 64856785 -59219387 + PB1D10 SINE Alu 3 110 -7 8 1079 384 111 0 0 chr9 64856992 64857055 -59219117 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1079 1406 60 27 0 chr9 64857143 64857326 -59218846 + B2_Mm1t SINE B2 3 190 -3 8 1079 620 303 11 33 chr9 64857381 64857562 -59218610 + B3A SINE B2 6 182 -16 8 1079 216 226 0 0 chr9 64857562 64857624 -59218548 + (TA)n Simple_repeat Simple_repeat 1 62 0 8 1079 697 213 14 21 chr9 64857644 64857788 -59218384 + B1_Mur1 SINE Alu 7 149 0 8 1079 207 0 0 0 chr9 64857810 64857833 -59218339 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 8 1079 27 0 0 0 chr9 64857833 64857860 -59218312 + AT_rich Low_complexity Low_complexity 1 27 0 8 1079 1130 120 29 0 chr9 64857877 64858052 -59218120 + B2_Mm1t SINE B2 1 180 -13 8 1079 366 112 348 19 chr9 64858117 64858221 -59217951 + B2_Mm2 SINE B2 47 186 -7 8 1079 1193 51 0 0 chr9 64858968 64859106 -59217066 + B1_Mm SINE Alu 1 138 -9 8 1079 336 272 0 36 chr9 64859977 64860061 -59216111 - ID4 SINE ID -1 82 2 8 1079 858 206 95 30 chr9 64860441 64860641 -59215531 + B3 SINE B2 2 214 -2 8 1079 1045 125 0 20 chr9 64860641 64860787 -59215385 + B1_Mur3 SINE Alu 1 144 -5 9 1079 503 227 109 0 chr9 64861062 64861190 -59214982 - B1_Mus2 SINE Alu -1 146 5 9 1079 226 133 32 32 chr9 64861555 64861617 -59214555 + CT-rich Low_complexity Low_complexity 4 65 0 9 1079 251 227 0 0 chr9 64861643 64861687 -59214485 - B1F SINE Alu -35 114 71 9 1079 541 243 19 9 chr9 64861967 64862075 -59214097 + RSINE1 SINE B4 57 165 0 9 1079 321 118 0 0 chr9 64862785 64862836 -59213336 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 1079 1184 82 0 0 chr9 64862839 64862986 -59213186 - B1_Mus1 SINE Alu 0 148 2 9 1079 1998 157 3 3 chr9 64862988 64863302 -59212870 + MTC LTR MaLR 108 421 0 9 1079 415 133 80 0 chr9 64863307 64863382 -59212790 - B3 SINE B2 -135 81 1 9 1079 565 136 175 8 chr9 64863557 64863683 -59212489 + B1_Mus2 SINE Alu 1 147 0 9 1079 455 252 19 68 chr9 64864155 64864181 -59211991 + ID_B1 SINE B4 60 212 -11 9 1079 724 154 15 37 chr9 64864181 64864316 -59211856 + B1_Mus1 SINE Alu 5 136 -12 9 1079 260 27 27 0 chr9 64864319 64864356 -59211816 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1079 467 69 0 0 chr9 64864356 64864414 -59211758 + RMER10B LTR ERVL 24 81 -317 9 1079 467 292 81 60 chr9 64864433 64864717 -59211455 + L2 LINE L2 2777 3066 -353 9 1079 254 82 0 39 chr9 64864718 64864769 -59211403 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 9 1079 391 273 59 20 chr9 64865464 64865617 -59210555 + RSINE1 SINE B4 3 161 -4 9 1079 318 50 0 0 chr9 64865629 64865669 -59210503 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1079 611 167 133 0 chr9 64865691 64865811 -59210361 - B1_Mur1 SINE Alu -9 140 5 9 1079 230 296 128 40 chr9 64866499 64866627 -59209545 - MIRc SINE MIR -76 192 53 9 1079 246 328 134 38 chr9 64867206 64867444 -59208728 + MER90 LTR ERV1 3 263 -312 9 1079 895 152 14 7 chr9 64868093 64868239 -59207933 + B1_Mur1 SINE Alu 3 149 0 9 1079 227 133 22 0 chr9 64869878 64869923 -59206249 + CT-rich Low_complexity Low_complexity 4 49 0 9 1079 407 225 149 26 chr9 64869923 64870037 -59206135 - B1_Mur1 SINE Alu -20 129 2 9 1079 619 224 112 0 chr9 64870378 64870503 -59205669 + ID_B1 SINE B4 56 194 -30 9 1079 258 290 167 20 chr9 64870412 64870514 -59205658 + B1_Mus1 SINE Alu 11 127 -21 9 1079 721 257 13 19 chr9 64870905 64871060 -59205112 + ID_B1 SINE B4 6 159 -65 9 1079 336 284 28 38 chr9 64870994 64871100 -59205072 + PB1D10 SINE Alu 13 117 0 9 1079 780 307 98 0 chr9 64871782 64872046 -59204126 - B4A SINE B4 -2 290 1 9 1079 1189 48 0 33 chr9 64872112 64872264 -59203908 + B1_Mus2 SINE Alu 1 147 0 9 1079 189 0 0 0 chr9 64872264 64872285 -59203887 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1079 3256 157 260 70 chr9 64872721 64873479 -59202693 - RMER19B LTR ERVK 0 902 1 9 1079 323 0 25 0 chr9 64873699 64873739 -59202433 - MTB_Mm LTR MaLR -366 41 1 9 1079 402 273 25 45 chr9 64873837 64873994 -59202178 - RLTR42-int LTR ERVK -4216 1306 1153 9 1079 227 310 48 39 chr9 64874003 64874107 -59202065 + MamGypLTR2c LTR Gypsy 919 1023 -45 9 1079 900 273 7 71 chr9 64874415 64874723 -59201449 - B4A SINE B4 -4 288 1 9 1079 55 25 0 12 chr9 64874840 64874882 -59201290 + AT_rich Low_complexity Low_complexity 1 42 0 9 1079 1154 82 0 0 chr9 64874882 64875028 -59201144 + B1_Mm SINE Alu 2 147 0 9 1079 55 25 0 12 chr9 64875028 64875065 -59201107 + AT_rich Low_complexity Low_complexity 1 37 0 9 1079 298 200 43 0 chr9 64875687 64875757 -59200415 - B3 SINE B2 0 216 144 9 1079 29 0 0 0 chr9 64875815 64875844 -59200328 + AT_rich Low_complexity Low_complexity 1 29 0 9 1079 716 195 8 0 chr9 64875882 64876010 -59200162 - B3 SINE B2 -86 130 2 9 1079 1176 62 7 0 chr9 64876043 64876188 -59199984 - B1_Mus2 SINE Alu 0 147 2 9 1079 263 284 39 69 chr9 64876346 64876448 -59199724 - LTR75 LTR ERVL -23 539 441 9 1079 342 0 0 0 chr9 64876469 64876507 -59199665 + (CTG)n Simple_repeat Simple_repeat 1 38 0 9 1079 203 128 43 0 chr9 64876520 64876567 -59199605 + T-rich Low_complexity Low_complexity 4 52 0 9 1079 710 200 13 27 chr9 64876567 64876716 -59199456 - B1_Mur3 SINE Alu 0 149 3 9 1079 4915 50 2 14 chr9 64876788 64877381 -59198791 - LTRIS_Mus LTR ERV1 -1 586 1 9 1079 246 292 27 14 chr9 64877425 64877498 -59198674 - LTR75 LTR ERVL -204 358 285 9 1079 325 233 0 52 chr9 64877829 64877906 -59198266 - B1_Mur1 SINE Alu -12 137 65 9 1079 469 295 24 8 chr9 64877874 64877997 -59198175 - B1F SINE Alu -24 125 1 9 1079 225 256 0 159 chr9 64878088 64878109 -59198063 - MT2B LTR ERVL -343 258 243 9 1079 288 0 0 0 chr9 64878109 64878141 -59198031 + (TCTCTG)n Simple_repeat Simple_repeat 6 37 0 9 1079 403 210 12 24 chr9 64878142 64878225 -59197947 - B1F1 SINE Alu -62 87 6 9 1079 244 300 9 3 chr9 64878168 64878256 -59197916 - B4A SINE B4 -145 147 58 9 1079 1274 122 26 5 chr9 64878467 64878657 -59197515 - B2_Mm2 SINE B2 -1 194 1 9 1079 1089 154 0 30 chr9 64879155 64879356 -59196816 + B2_Mm2 SINE B2 1 195 0 9 1079 219 146 0 0 chr9 64879652 64879693 -59196479 + (A)n Simple_repeat Simple_repeat 1 41 0 9 1079 345 145 0 0 chr9 64879836 64879912 -59196260 + (GA)n Simple_repeat Simple_repeat 1 76 0 9 1079 23 0 0 0 chr9 64880303 64880326 -59195846 + GC_rich Low_complexity Low_complexity 1 23 0 9 1080 313 265 23 120 chr9 64881453 64881496 -59194676 + MT2B2 LTR ERVL 127 244 -338 9 1080 515 227 0 0 chr9 64881496 64881584 -59194588 + PB1D10 SINE Alu 1 88 -29 9 1080 251 154 53 179 chr9 64881750 64881845 -59194327 - RSINE1 SINE B4 0 165 83 9 1080 230 246 27 80 chr9 64881849 64881924 -59194248 - PB1D7 SINE Alu -10 110 40 9 1080 709 254 29 12 chr9 64882118 64882289 -59193883 - B3A SINE B2 -16 182 9 9 1080 325 190 155 40 chr9 64885144 64885288 -59190884 - B2_Mm2 SINE B2 0 195 21 9 1080 1372 90 0 0 chr9 64885288 64885466 -59190706 - B2_Mm2 SINE B2 -16 179 2 9 1080 268 301 0 61 chr9 64885466 64885477 -59190695 - B2_Mm1t SINE B2 -173 20 10 9 1080 252 175 0 0 chr9 64885477 64885540 -59190632 + T-rich Low_complexity Low_complexity 1 63 0 9 1080 536 55 0 40 chr9 64885545 64885621 -59190551 - B1_Mur3 SINE Alu -1 148 76 9 1080 241 247 23 58 chr9 64885972 64886058 -59190114 - ID4_ SINE ID 0 83 1 9 1080 619 264 31 6 chr9 64886156 64886316 -59189856 - RSINE1 SINE B4 0 165 2 9 1080 257 250 191 21 chr9 64886358 64886452 -59189720 + PB1D10 SINE Alu 3 112 -5 9 1080 212 0 36 0 chr9 64886486 64886514 -59189658 + (TTA)n Simple_repeat Simple_repeat 2 30 0 9 1080 378 213 22 66 chr9 64886543 64886679 -59189493 - Lx5 LINE L1 -3 7047 6918 9 1080 203 261 0 0 chr9 64887217 64887263 -59188909 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1080 358 270 44 18 chr9 64887392 64887505 -59188667 - ID_B1 SINE B4 -39 185 70 9 1080 599 248 7 42 chr9 64887518 64887661 -59188511 - B1F2 SINE Alu -10 139 2 9 1080 231 114 0 0 chr9 64887741 64887776 -59188396 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 9 1080 481 227 148 0 chr9 64887796 64887924 -59188248 - B1_Mus1 SINE Alu -1 147 1 9 1080 306 0 0 0 chr9 64887938 64887972 -59188200 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 9 1080 223 323 0 15 chr9 64888426 64888492 -59187680 - PB1D10 SINE Alu -33 84 20 9 1080 578 258 6 35 chr9 64889318 64889491 -59186681 + B3 SINE B2 25 192 -24 9 1080 211 318 141 0 chr9 64889574 64889659 -59186513 - PB1D10 SINE Alu -7 110 14 9 1080 234 148 0 0 chr9 64889704 64889758 -59186414 + (T)n Simple_repeat Simple_repeat 1 54 0 9 1080 501 228 26 17 chr9 64889759 64889875 -59186297 - PB1D10 SINE Alu 0 117 1 9 1080 972 256 5 10 chr9 64890404 64890609 -59185563 - B3 SINE B2 -5 211 8 9 1080 183 143 27 54 chr9 64890639 64890713 -59185459 + (TTTG)n Simple_repeat Simple_repeat 3 74 0 9 1080 281 104 40 46 chr9 64890713 64890780 -59185392 - B1F SINE Alu -1 148 65 9 1080 528 200 0 0 chr9 64891038 64891158 -59185014 + CT-rich Low_complexity Low_complexity 3 122 0 9 1080 847 146 36 0 chr9 64891158 64891295 -59184877 - B1_Mus2 SINE Alu -5 142 1 9 1080 27 29 0 0 chr9 64891863 64891897 -59184275 + AT_rich Low_complexity Low_complexity 1 34 0 9 1080 1544 49 0 11 chr9 64892063 64892249 -59183923 - B2_Mm1t SINE B2 -8 185 2 9 1080 1129 95 0 0 chr9 64892301 64892449 -59183723 + B1_Mus1 SINE Alu 1 148 0 9 1080 846 239 29 14 chr9 64892514 64892722 -59183450 + B3 SINE B2 2 212 -4 9 1080 399 280 47 31 chr9 64892768 64892897 -59183275 - RSINE1 SINE B4 -10 155 25 9 1080 553 246 13 90 chr9 64892995 64893151 -59183021 + B1_Mur2 SINE Alu 1 144 -5 9 1080 1430 69 16 0 chr9 64893775 64893964 -59182208 - B2_Mm1a SINE B2 0 193 2 9 1080 24 0 0 0 chr9 64894047 64894071 -59182101 + AT_rich Low_complexity Low_complexity 1 24 0 9 1080 722 96 82 82 chr9 64894073 64894220 -59181952 - B1_Mur4 SINE Alu -2 148 2 9 1080 1138 88 0 13 chr9 64894247 64894396 -59181776 - B1_Mus1 SINE Alu 0 148 2 9 1080 1214 110 23 0 chr9 64894396 64894569 -59181603 - B2_Mm2 SINE B2 -15 180 4 9 1080 2460 93 9 3 chr9 64894804 64895128 -59181044 - ORR1A3 LTR MaLR 0 326 1 9 1080 702 171 15 30 chr9 64895164 64895297 -59180875 + B1_Mur2 SINE Alu 19 149 0 1 1080 259 280 80 0 chr9 64895279 64895379 -59180793 + MER2B DNA MER2_type 56 163 -173 1 1080 345 329 92 44 chr9 64895489 64895718 -59180454 + MER2 DNA MER2_type 81 320 -25 1 1080 567 160 109 51 chr9 64896427 64896565 -59179607 - B1_Mus2 SINE Alu -1 146 1 1 1080 759 171 0 0 chr9 64897622 64897745 -59178427 + B1_Mus2 SINE Alu 1 123 -24 1 1080 576 216 67 25 chr9 64897795 64897914 -59178258 + PB1 SINE Alu 2 125 -2 1 1080 414 250 285 32 chr9 64897915 64898026 -59178146 + L1M5 LINE L1 5428 5584 -860 1 1080 547 38 38 0 chr9 64898026 64898106 -59178066 + L1Md_F2 LINE L1 6500 6582 0 1 1080 414 250 285 32 chr9 64898106 64898271 -59177901 + L1M5 LINE L1 5585 5774 -670 1 1080 210 273 121 0 chr9 64898271 64898285 -59177887 + ID SINE ID 63 84 -140 1 1080 256 281 50 0 chr9 64898285 64898378 -59177794 + B1_Mur3 SINE Alu 3 107 -13 1 1080 1530 181 88 40 chr9 64898379 64898507 -59177665 - ORR1D1 LTR MaLR -4 370 229 1 1080 231 36 0 0 chr9 64898507 64898535 -59177637 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 1 1080 1530 181 88 40 chr9 64898535 64898758 -59177414 - ORR1D1 LTR MaLR -146 228 2 1 1080 260 316 125 10 chr9 64899018 64899114 -59177058 - MIRb SINE MIR -160 108 2 1 1080 694 213 80 6 chr9 64899863 64900038 -59176134 - B3 SINE B2 0 216 29 1 1080 246 279 16 0 chr9 64900663 64900724 -59175448 + ID4_ SINE ID 15 76 -7 1 1080 311 180 11 53 chr9 64901014 64901123 -59175049 + B1F SINE Alu 9 141 -8 1 1080 800 235 5 38 chr9 64901751 64901937 -59174235 + B4 SINE B4 36 215 -77 1 1080 198 0 0 0 chr9 64901937 64901959 -59174213 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1080 572 208 7 81 chr9 64903836 64903972 -59172200 - RSINE1 SINE B4 -36 129 4 1 1080 225 150 25 0 chr9 64904183 64904223 -59171949 + U6 snRNA snRNA 1 41 -66 1 1080 31 26 0 0 chr9 64904237 64904275 -59171897 + AT_rich Low_complexity Low_complexity 1 38 0 1 1080 688 213 0 35 chr9 64904275 64904416 -59171756 - B1_Mur1 SINE Alu -13 136 1 1 1080 957 220 14 23 chr9 64904444 64904658 -59171514 + B3 SINE B2 5 216 0 1 1080 528 125 10 0 chr9 64904889 64904985 -59171187 - L1_Mus3 LINE L1 -2 6636 6540 1 1080 997 212 18 23 chr9 64905074 64905291 -59170881 - B3 SINE B2 0 216 1 1 1080 274 306 18 53 chr9 64905309 64905423 -59170749 - PB1D10 SINE Alu -1 116 7 1 1080 212 220 16 63 chr9 64905374 64905437 -59170735 - ID_B1 SINE B4 -87 137 78 1 1080 849 179 7 0 chr9 64905534 64905674 -59170498 - B1_Mur2 SINE Alu -5 144 4 1 1080 267 31 0 0 chr9 64906128 64906160 -59170012 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1080 1346 65 5 75 chr9 64906820 64907019 -59169153 + B2_Mm1t SINE B2 1 185 -8 1 1080 531 221 38 15 chr9 64907160 64907293 -59168879 + B1F2 SINE Alu 5 140 -9 1 1080 1649 47 0 0 chr9 64907374 64907567 -59168605 - B2_Mm1a SINE B2 0 193 1 1 1080 822 204 0 0 chr9 64907627 64907774 -59168398 - B1_Mur2 SINE Alu -1 148 2 1 1080 249 196 0 0 chr9 64907831 64907877 -59168295 - L1MB5 LINE L1 -91 6083 6038 1 1080 450 0 0 0 chr9 64908164 64908214 -59167958 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1080 412 223 241 0 chr9 64908296 64908408 -59167764 + B1_Mur2 SINE Alu 5 143 -6 1 1080 1406 23 103 0 chr9 64908419 64908593 -59167579 + B2_Mm1t SINE B2 2 193 0 1 1080 306 0 0 0 chr9 64908688 64908722 -59167450 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1080 838 219 27 0 chr9 64908723 64908906 -59167266 - B3 SINE B2 -27 189 2 1 1080 1726 26 0 0 chr9 64908978 64909170 -59167002 + B2_Mm1t SINE B2 2 193 0 1 1080 216 222 11 69 chr9 64909488 64909575 -59166597 - B1_Mur4 SINE Alu -2 148 67 1 1080 452 298 6 111 chr9 64909626 64909807 -59166365 + RSINE1 SINE B4 3 164 -1 1 1080 305 229 159 35 chr9 64910143 64910288 -59165884 + MER5A DNA MER1_type 2 164 -25 1 1080 24 53 0 0 chr9 64910560 64910598 -59165574 + AT_rich Low_complexity Low_complexity 1 38 0 1 1080 303 254 109 0 chr9 64912129 64912239 -59163933 - B1F SINE Alu -13 136 15 1 1080 556 243 141 9 chr9 64912257 64912520 -59163652 - MTE2a LTR MaLR -12 367 68 1 1080 24 32 0 0 chr9 64912558 64912589 -59163583 + AT_rich Low_complexity Low_complexity 1 31 0 1 1080 246 119 0 23 chr9 64912596 64912639 -59163533 - B1_Mus1 SINE Alu -103 45 4 1 1080 913 147 88 0 chr9 64912777 64912947 -59163225 + B2_Mm2 SINE B2 5 189 -6 1 1080 290 148 0 0 chr9 64912952 64913006 -59163166 + PB1D7 SINE Alu 67 120 0 1 1080 418 312 174 8 chr9 64913016 64913252 -59162920 + B4A SINE B4 2 276 -16 1 1080 615 231 92 0 chr9 64913337 64913467 -59162705 + B1_Mm SINE Alu 5 146 -1 1 1080 745 144 0 0 chr9 64913522 64913640 -59162532 - B3 SINE B2 -96 120 3 1 1080 26 0 0 0 chr9 64913643 64913669 -59162503 + AT_rich Low_complexity Low_complexity 1 26 0 1 1080 270 116 0 0 chr9 64914318 64914361 -59161811 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1 1080 1230 144 45 5 chr9 64914370 64914572 -59161600 - B3 SINE B2 -3 213 4 1 1080 262 267 17 0 chr9 64914633 64914693 -59161479 + B1_Mus1 SINE Alu 2 62 -86 1 1080 278 299 152 46 chr9 64914723 64914940 -59161232 + B4A SINE B4 36 275 -17 1 1080 440 153 415 30 chr9 64915450 64915585 -59160587 + B2_Mm2 SINE B2 2 188 -7 1 1080 236 304 268 0 chr9 64915606 64915718 -59160454 + B1_Mus2 SINE Alu 1 142 -5 1 1080 1349 81 42 21 chr9 64915773 64915963 -59160209 + B2_Mm2 SINE B2 2 195 0 1 1080 593 297 142 26 chr9 64916069 64916440 -59159732 + L1M3 LINE L1 5380 5796 -384 1 1080 471 353 0 7 chr9 64916440 64916594 -59159578 + RSINE1 SINE B4 3 155 -10 1 1080 480 191 287 0 chr9 64916608 64916723 -59159449 + B1_Mus1 SINE Alu 1 148 0 1 1080 280 316 137 0 chr9 64916732 64916849 -59159323 + RSINE1 SINE B4 2 134 -31 1 1080 211 242 136 0 chr9 64916952 64917018 -59159154 + ID4 SINE ID 1 75 -8 1 1080 335 316 22 36 chr9 64917058 64917083 -59159089 - ID_B1 SINE B4 -5 219 193 1 1080 189 0 0 0 chr9 64917083 64917104 -59159068 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 1 1080 335 316 22 36 chr9 64917104 64917216 -59158956 - ID_B1 SINE B4 -32 192 84 1 1080 536 214 43 0 chr9 64917305 64917422 -59158750 + RSINE1 SINE B4 3 124 -41 1 1080 309 51 0 0 chr9 64917431 64917470 -59158702 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1080 199 191 16 16 chr9 64917506 64917570 -59158602 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1080 1523 194 29 58 chr9 64917823 64918200 -59157972 - ORR1D1 LTR MaLR -8 366 1 1 1080 246 276 35 0 chr9 64918556 64918614 -59157558 + ID4_ SINE ID 15 74 -9 1 1080 744 94 0 0 chr9 64919053 64919159 -59157013 + (GA)n Simple_repeat Simple_repeat 2 107 0 1 1080 464 60 30 0 chr9 64919172 64919239 -59156933 + (GAAAA)n Simple_repeat Simple_repeat 3 71 0 1 1080 989 84 28 7 chr9 64919420 64919563 -59156609 - B1_Mus2 SINE Alu -1 146 1 1 1080 1341 85 23 0 chr9 64919646 64919823 -59156349 + B2_Mm2 SINE B2 1 181 -14 1 1080 445 47 314 0 chr9 64919854 64919960 -59156212 + B2_Mm2 SINE B2 46 190 -5 1 1080 319 321 26 18 chr9 64920205 64920319 -59155853 - PB1 SINE Alu -8 119 5 1 1080 389 278 79 50 chr9 64920375 64920515 -59155657 - RSINE1 SINE B4 -19 146 3 1 1080 688 169 138 0 chr9 64920523 64920653 -59155519 - B1_Mus1 SINE Alu 0 148 1 1 1080 320 216 94 94 chr9 64921032 64921170 -59155002 + ID_B1 SINE B4 86 223 -1 1 1080 240 246 31 123 chr9 64921163 64921185 -59154987 + ID_B1 SINE B4 78 97 -127 1 1080 213 39 0 0 chr9 64921185 64921211 -59154961 + (TGG)n Simple_repeat Simple_repeat 2 27 0 1 1080 568 208 0 44 chr9 64921214 64921350 -59154822 + B1_Mur3 SINE Alu 19 148 -1 1 1080 290 203 43 0 chr9 64921358 64921427 -59154745 + BC1_Mm scRNA scRNA 1 72 -80 1 1080 198 279 0 32 chr9 64922675 64922738 -59153434 - L3b LINE CR1 -260 222 162 1 1080 548 204 26 9 chr9 64923749 64923863 -59152309 - PB1D9 SINE Alu -4 116 1 1 1080 451 308 44 19 chr9 64924364 64924523 -59151649 + RSINE1 SINE B4 3 165 0 1 1080 264 247 136 0 chr9 64924580 64924661 -59151511 + RSINE1 SINE B4 9 100 -65 1 1080 1171 61 7 0 chr9 64924823 64924970 -59151202 + B1_Mus1 SINE Alu 1 148 0 1 1080 365 273 9 43 chr9 64925009 64925124 -59151048 - ID_B1 SINE B4 -33 191 81 1 1080 286 333 17 34 chr9 64925150 64925268 -59150904 + PB1D10 SINE Alu 1 116 -1 1 1080 213 308 92 0 chr9 64926036 64926101 -59150071 - ID4 SINE ID 0 83 13 1 1080 360 232 111 0 chr9 64927080 64927179 -59148993 + ID_B1 SINE B4 82 191 -33 1 1080 274 175 0 31 chr9 64927673 64927738 -59148434 - Charlie1a DNA MER1_type -513 942 880 1 1080 1218 54 0 0 chr9 64927739 64927886 -59148286 + B1_Mus1 SINE Alu 2 148 0 1 1080 405 209 307 48 chr9 64927917 64928083 -59148089 + B3 SINE B2 2 210 -6 1 1080 1459 51 17 0 chr9 64928098 64928275 -59147897 - B2_Mm2 SINE B2 -15 180 1 1 1080 334 274 116 0 chr9 64928355 64928450 -59147722 + ID_B1 SINE B4 112 217 -7 1 1080 3004 124 94 34 chr9 64932636 64933188 -59142984 - RMER4B LTR ERVK 0 585 1 1 1080 584 193 87 9 chr9 64933200 64933315 -59142857 - RSINE1 SINE B4 -38 127 4 1 1080 241 207 17 17 chr9 64933372 64933431 -59142741 - ID4 SINE ID -21 62 4 1 1080 668 206 111 28 chr9 64933633 64933813 -59142359 + B3 SINE B2 8 202 -14 1 1080 978 129 0 0 chr9 64933851 64933991 -59142181 + B1_Mus1 SINE Alu 5 144 -4 1 1080 243 181 0 0 chr9 64934411 64934483 -59141689 + (TTGGGG)n Simple_repeat Simple_repeat 5 76 0 1 1080 556 221 8 0 chr9 64934863 64934985 -59141187 + RSINE1 SINE B4 3 125 -40 1 1080 261 0 0 0 chr9 64934986 64935015 -59141157 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1080 200 139 28 0 chr9 64935015 64935051 -59141121 + GA-rich Low_complexity Low_complexity 1 37 0 1 1080 1113 221 136 18 chr9 64935325 64935656 -59140516 + ORR1D2 LTR MaLR 1 370 0 1 1080 223 182 0 0 chr9 64935657 64935701 -59140471 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1080 934 151 201 0 chr9 64935727 64935906 -59140266 + B3 SINE B2 2 216 0 1 1080 210 71 0 0 chr9 64935906 64935934 -59140238 + (GGAGAA)n Simple_repeat Simple_repeat 4 31 0 1 1080 220 267 52 26 chr9 64935940 64936017 -59140155 - B3 SINE B2 -84 132 54 1 1080 232 278 64 9 chr9 64936104 64936213 -59139959 - B3A SINE B2 -82 116 2 1 1080 647 214 0 0 chr9 64936283 64936400 -59139772 - PB1D10 SINE Alu 0 117 1 1 1080 314 246 179 28 chr9 64936406 64936620 -59139552 - L1M2 LINE L1 -1072 5071 4801 1 1080 435 307 100 40 chr9 64936621 64936821 -59139351 + L1M2 LINE L1 3673 3884 -2256 1 1080 575 243 166 32 chr9 64936975 64937162 -59139010 + B4 SINE B4 33 244 -48 1 1080 871 256 73 11 chr9 64937137 64937398 -59138774 + B4A SINE B4 10 286 -6 1 1080 232 265 44 0 chr9 64937435 64937503 -59138669 + B4 SINE B4 220 290 -2 1 1080 324 64 0 0 chr9 64937509 64937556 -59138616 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1080 363 193 80 0 chr9 64937557 64937645 -59138527 + L1M2 LINE L1 4673 4767 -1376 1 1080 261 333 39 45 chr9 64937741 64937895 -59138277 + MER5B DNA MER1_type 26 178 0 1 1080 782 212 115 11 chr9 64938060 64938251 -59137921 + B3 SINE B2 1 211 -5 1 1080 330 253 35 0 chr9 64938499 64938586 -59137586 + B4A SINE B4 4 93 -199 1 1080 430 282 48 27 chr9 64938635 64938781 -59137391 + RSINE1 SINE B4 14 162 -3 1 1080 378 0 0 0 chr9 64938839 64938881 -59137291 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1080 459 275 9 0 chr9 64938903 64939012 -59137160 + PB1D10 SINE Alu 1 110 -7 1 1080 807 179 107 76 chr9 64939057 64939082 -59137090 + RMER4B LTR ERVK 17 39 -546 1 1080 1453 89 16 0 chr9 64939082 64939272 -59136900 + B2_Mm2 SINE B2 1 193 -2 1 1080 807 179 107 76 chr9 64939272 64939470 -59136702 + RMER4B LTR ERVK 40 247 -338 1 1080 454 143 275 38 chr9 64939531 64939662 -59136510 + Lx8 LINE L1 6989 7150 -323 1 1080 361 241 12 0 chr9 64939664 64939747 -59136425 + B3 SINE B2 4 87 -129 1 1080 385 169 26 0 chr9 64939754 64939831 -59136341 + PB1D9 SINE Alu 32 110 -10 1 1080 215 0 0 62 chr9 64939832 64939864 -59136308 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1080 1079 67 0 15 chr9 64940041 64940177 -59135995 + B1_Mus1 SINE Alu 1 134 -14 1 1080 1371 85 5 16 chr9 64940202 64940394 -59135778 + B2_Mm2 SINE B2 2 191 -4 1 1080 1078 167 36 10 chr9 64940431 64940625 -59135547 + B3 SINE B2 2 200 -16 1 1080 580 155 68 0 chr9 64940655 64940758 -59135414 + B1_Mus2 SINE Alu 31 140 -7 1 1080 36 23 0 0 chr9 64940760 64940803 -59135369 + AT_rich Low_complexity Low_complexity 1 43 0 1 1080 631 92 0 0 chr9 64940866 64940953 -59135219 + B1_Mur4 SINE Alu 9 95 -55 1 1080 669 147 0 123 chr9 64940977 64941132 -59135040 - B1_Mur4 SINE Alu -6 144 9 1 1080 246 258 6 156 chr9 64941132 64941156 -59135016 - ID_B1 SINE B4 -6 218 67 1 1080 1198 71 18 0 chr9 64941188 64941357 -59134815 - B2_Mm2 SINE B2 -23 172 1 1 1080 370 222 42 0 chr9 64941375 64941447 -59134725 - ID_B1 SINE B4 -69 155 81 1 1080 678 273 6 0 chr9 64941491 64941652 -59134520 - RSINE1 SINE B4 -1 164 3 1 1080 252 273 45 0 chr9 64941693 64941759 -59134413 + ID4 SINE ID 10 78 -5 1 1080 1201 48 7 0 chr9 64941800 64941946 -59134226 + B1_Mus1 SINE Alu 2 148 0 1 1080 257 297 500 16 chr9 64942643 64942833 -59133339 - B4 SINE B4 -10 282 1 1 1080 217 0 0 57 chr9 64943103 64943138 -59133034 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1080 220 232 47 24 chr9 64943138 64943221 -59132951 - L2c LINE L2 -94 3293 3179 1 1080 250 246 15 30 chr9 64943278 64943345 -59132827 + MIRm SINE MIR 72 137 -139 1 1080 28 71 0 0 chr9 64943409 64943465 -59132707 + AT_rich Low_complexity Low_complexity 1 56 0 1 1080 1337 78 56 0 chr9 64943465 64943644 -59132528 + B2_Mm2 SINE B2 2 190 -5 1 1080 231 36 0 0 chr9 64944015 64944043 -59132129 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1080 338 230 130 17 chr9 64944046 64944161 -59132011 + RSINE1 SINE B4 9 136 -29 1 1080 908 179 207 0 chr9 64944203 64944382 -59131790 - B3 SINE B2 0 216 1 1 1080 1184 57 0 0 chr9 64944502 64944642 -59131530 + B1_Mus2 SINE Alu 2 141 -6 1 1080 209 33 0 32 chr9 64944646 64944677 -59131495 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1080 974 163 179 0 chr9 64944863 64945053 -59131119 + URR1B DNA MER1_type 2 225 0 1 1080 266 0 39 58 chr9 64945596 64945648 -59130524 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1 1080 1205 28 14 0 chr9 64945648 64945789 -59130383 - B1_Mus1 SINE Alu -3 145 3 1 1080 1419 133 48 32 chr9 64945822 64946071 -59130101 - Lx2A1 LINE L1 -2 7006 6754 1 1080 252 0 0 0 chr9 64946100 64946128 -59130044 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1080 436 172 194 39 chr9 64946133 64946236 -59129936 - PB1D9 SINE Alu -1 119 1 1 1080 1181 108 14 106 chr9 64946248 64946455 -59129717 - B2_Mm2 SINE B2 -7 188 1 1 1080 207 0 0 0 chr9 64946472 64946495 -59129677 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 1080 493 244 282 11 chr9 64946547 64946721 -59129451 - ID_B1 SINE B4 -3 221 1 1 1080 193 146 20 20 chr9 64946801 64946850 -59129322 + CT-rich Low_complexity Low_complexity 2 50 0 1 1080 354 229 57 0 chr9 64946870 64946940 -59129232 - ID4_ SINE ID -8 75 2 1 1080 640 297 17 6 chr9 64947685 64947861 -59128311 + ID_B1 SINE B4 6 183 -41 1 1080 950 228 34 0 chr9 64947998 64948204 -59127968 - B3 SINE B2 -3 213 1 1 1080 767 223 43 21 chr9 64948227 64948415 -59127757 - B3A SINE B2 0 198 7 1 1080 259 208 0 25 chr9 64949176 64949255 -59126917 + C-rich Low_complexity Low_complexity 3 79 0 1 1080 35 71 0 0 chr9 64949270 64949340 -59126832 + GC_rich Low_complexity Low_complexity 1 70 0 1 1080 243 88 0 0 chr9 64950782 64950816 -59125356 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1 1080 904 202 90 15 chr9 64951682 64951883 -59124289 - B3 SINE B2 0 216 1 1 1080 249 108 0 0 chr9 64952281 64952318 -59123854 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1080 384 22 0 0 chr9 64952318 64952362 -59123810 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1080 410 291 41 49 chr9 64952411 64952534 -59123638 - B3 SINE B2 -86 130 9 1 1080 812 145 76 0 chr9 64952566 64952697 -59123475 - B1_Mur4 SINE Alu -9 141 1 1 1080 303 320 10 67 chr9 64952829 64952851 -59123321 + B4A SINE B4 70 85 -207 1 1080 451 305 0 11 chr9 64952851 64952977 -59123195 + B1F SINE Alu 1 120 0 1 1080 196 229 289 0 chr9 64952995 64953078 -59123094 - MIR SINE MIR -65 143 37 1 1080 772 229 90 28 chr9 64953788 64953999 -59122173 - ID_B1 SINE B4 0 224 1 1 1080 781 193 203 6 chr9 64954315 64954497 -59121675 + ID_B1 SINE B4 2 219 -5 1 1080 260 178 22 0 chr9 64955232 64955304 -59120868 + B1F SINE Alu 42 149 0 1 1080 252 0 0 0 chr9 64955308 64955336 -59120836 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1080 226 250 46 111 chr9 64955361 64955373 -59120799 + MT2B LTR ERVL 157 161 -440 1 1080 559 211 49 11 chr9 64955373 64955502 -59120670 + B1_Mur4 SINE Alu 4 138 -12 1 1080 710 11 34 0 chr9 64955502 64955591 -59120581 + (GAAAA)n Simple_repeat Simple_repeat 1 92 0 1 1080 228 273 0 0 chr9 64955650 64955694 -59120478 + polypurine Low_complexity Low_complexity 2 45 0 1 1080 789 231 126 0 chr9 64955983 64956165 -59120007 + B3 SINE B2 1 205 -11 1 1080 192 40 0 0 chr9 64956173 64956198 -59119974 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1080 342 0 0 0 chr9 64956252 64956290 -59119882 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1080 219 69 0 0 chr9 64956294 64956323 -59119849 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1080 462 176 33 0 chr9 64956333 64956424 -59119748 - B2_Mm2 SINE B2 -56 139 46 1 1080 394 190 13 0 chr9 64956424 64956503 -59119669 - ID_B1 SINE B4 0 224 145 1 1080 370 161 0 31 chr9 64956509 64956573 -59119599 - ID4 SINE ID -6 77 16 1 1080 377 234 199 55 chr9 64956531 64956712 -59119460 - ID_B1 SINE B4 -17 207 1 1 1080 214 284 95 36 chr9 64957891 64957975 -59118197 - MIRm SINE MIR -122 154 66 1 1080 513 0 0 0 chr9 64957980 64958037 -59118135 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1080 32 43 0 0 chr9 64958387 64958433 -59117739 + AT_rich Low_complexity Low_complexity 1 46 0 1 1080 675 237 155 36 chr9 64958454 64958647 -59117525 - B3 SINE B2 0 216 1 1 1080 431 282 68 0 chr9 64958647 64958764 -59117408 - B4A SINE B4 -64 228 104 1 1080 357 24 0 0 chr9 64959027 64959069 -59117103 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1080 867 192 22 17 chr9 64959069 64959249 -59116923 - B3 SINE B2 -9 207 27 1 1080 973 110 7 0 chr9 64959255 64959401 -59116771 - B1_Mus2 SINE Alu 0 147 1 1 1080 288 268 37 0 chr9 64959401 64959436 -59116736 - B3 SINE B2 -178 38 1 1 1080 234 0 0 0 chr9 64959959 64959985 -59116187 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1080 992 230 13 40 chr9 64960264 64960490 -59115682 - ID_B1 SINE B4 -4 220 1 1 1080 954 285 121 9 chr9 64960513 64960887 -59115285 - L1MB7 LINE L1 -73 6111 5691 1 1080 615 0 0 59 chr9 64961986 64962087 -59114085 + (TTCTC)n Simple_repeat Simple_repeat 5 99 0 1 1080 829 205 141 20 chr9 64963302 64963501 -59112671 - ID_B1 SINE B4 0 224 2 1 1080 466 168 158 0 chr9 64963593 64963688 -59112484 - PB1D10 SINE Alu -6 111 2 1 1080 305 232 49 0 chr9 64963737 64963819 -59112353 - B1F SINE Alu -5 144 59 1 1080 268 222 48 0 chr9 64964229 64964292 -59111880 + (TCTG)n Simple_repeat Simple_repeat 3 68 0 1 1080 230 233 0 0 chr9 64964294 64964337 -59111835 - ID_B1 SINE B4 -8 216 174 1 1080 309 141 42 0 chr9 64964347 64964418 -59111754 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 1 1080 380 302 31 0 chr9 64964430 64964526 -59111646 - PB1D10 SINE Alu -13 104 6 1 1080 524 287 46 58 chr9 64964440 64964614 -59111558 - ID_B1 SINE B4 -52 172 1 1 1080 1220 61 0 0 chr9 64964714 64964861 -59111311 + B1_Mus2 SINE Alu 1 147 0 1 1080 201 74 0 0 chr9 64964861 64964888 -59111284 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1080 1316 41 98 6 chr9 64965186 64965359 -59110813 - B2_Mm2 SINE B2 -6 189 1 1 1080 750 303 24 0 chr9 64966410 64966621 -59109551 - ID_B1 SINE B4 -8 216 1 1 1080 272 297 58 29 chr9 64966652 64966756 -59109416 + MIRb SINE MIR 94 200 -68 1 1080 396 296 60 24 chr9 64966829 64966995 -59109177 + B3A SINE B2 8 179 -19 1 1080 1223 49 0 0 chr9 64967086 64967228 -59108944 - B1_Mus2 SINE Alu -5 142 1 1 1080 1520 74 5 0 chr9 64967281 64967471 -59108701 + B2_Mm1t SINE B2 2 192 -1 1 1080 198 0 0 0 chr9 64968283 64968305 -59107867 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 1 1080 300 247 49 12 chr9 64968702 64968784 -59107388 + MIRc SINE MIR 15 99 -169 1 1080 1224 49 0 0 chr9 64969076 64969220 -59106952 - B1_Mm SINE Alu -3 144 1 1 1080 322 253 63 0 chr9 64969819 64969898 -59106274 + RSINE1 SINE B4 82 165 0 1 1080 860 170 7 7 chr9 64969935 64970077 -59106095 + B1_Mus1 SINE Alu 1 142 -6 1 1080 231 140 0 0 chr9 64970092 64970142 -59106030 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1080 351 0 0 0 chr9 64970149 64970188 -59105984 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1080 441 0 0 0 chr9 64970188 64970236 -59105936 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1080 328 178 179 12 chr9 64970929 64971041 -59105131 + B1F1 SINE Alu 21 149 0 1 1080 279 284 112 31 chr9 64971127 64971225 -59104947 - B4 SINE B4 -76 216 111 1 1080 287 222 56 0 chr9 64971237 64971309 -59104863 + PB1D10 SINE Alu 42 117 0 1 1080 351 247 137 0 chr9 64972684 64972819 -59103353 - MIRc SINE MIR -87 181 26 1 1080 206 275 10 99 chr9 64972964 64973065 -59103107 + MIRb SINE MIR 61 152 -116 1 1080 967 246 62 40 chr9 64973364 64973639 -59102533 + B4 SINE B4 11 291 -1 1 1080 1225 134 0 15 chr9 64973837 64974034 -59102138 - B2_Mm2 SINE B2 -1 194 1 1 1080 190 284 139 11 chr9 64974847 64974952 -59101220 + MIRm SINE MIR 14 131 -137 1 1080 639 275 220 0 chr9 64975025 64975207 -59100965 + ID_B1 SINE B4 2 223 -1 1 1080 687 132 149 0 chr9 64975293 64975414 -59100758 + B1_Mus2 SINE Alu 9 147 0 1 1080 198 0 0 0 chr9 64975471 64975493 -59100679 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1080 1120 35 35 28 chr9 64975519 64975664 -59100508 + B1_Mus2 SINE Alu 2 147 0 1 1080 219 336 85 54 chr9 64975704 64975833 -59100339 + RSINE1 SINE B4 4 136 -29 1 1080 28 29 0 0 chr9 64975835 64975870 -59100302 + AT_rich Low_complexity Low_complexity 1 35 0 1 1080 1352 78 66 6 chr9 64976967 64977148 -59099024 - B2_Mm2 SINE B2 -3 192 1 1 1080 222 135 0 26 chr9 64977208 64977246 -59098926 + MIRm SINE MIR 36 72 -204 1 1080 267 309 80 18 chr9 64977254 64977366 -59098806 - L2a LINE L2 -1 3425 3307 1 1080 275 288 227 8 chr9 64977462 64977581 -59098591 + RSINE1 SINE B4 2 146 -19 1 1080 1357 82 11 32 chr9 64977649 64977838 -59098334 - B2_Mm2 SINE B2 -10 185 1 1 1080 358 250 124 57 chr9 64977893 64978043 -59098129 - MIR SINE MIR -97 165 6 1 1080 380 303 0 27 chr9 64978175 64978287 -59097885 + PB1D10 SINE Alu 2 110 -7 1 1080 260 340 48 0 chr9 64980223 64980326 -59095846 - MER45A DNA Tip100 -31 147 40 1 1080 221 191 253 22 chr9 64980312 64980336 -59095836 + B4A SINE B4 44 78 -214 1 1080 351 0 0 0 chr9 64980336 64980375 -59095797 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1080 272 213 712 19 chr9 64980375 64980501 -59095671 + B4A SINE B4 79 287 -5 1 1080 229 227 105 13 chr9 64981073 64981149 -59095023 + ID4_ SINE ID 1 83 0 1 1080 414 0 0 0 chr9 64981781 64981827 -59094345 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1080 225 0 0 0 chr9 64983528 64983553 -59092619 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1080 270 0 0 0 chr9 64984840 64984870 -59091302 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 1 1080 1029 113 31 0 chr9 64985756 64985915 -59090257 - B2_Mm1t SINE B2 0 193 30 1 1080 233 111 0 0 chr9 64985914 64985950 -59090222 - B1_Mur4 SINE Alu -113 37 2 1 1080 374 310 95 0 chr9 64985979 64986095 -59090077 - B3A SINE B2 -38 160 34 1 1080 1188 82 0 0 chr9 64986234 64986381 -59089791 + B1_Mus2 SINE Alu 1 147 0 1 1080 228 67 0 0 chr9 64987264 64987294 -59088878 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 1080 848 164 7 14 chr9 64987307 64987449 -59088723 - B1_Mur4 SINE Alu -9 141 1 1 1080 834 189 7 0 chr9 64987465 64987613 -59088559 - B1_Mur2 SINE Alu 0 149 1 1 1080 350 356 40 74 chr9 64987613 64987644 -59088528 - B4 SINE B4 -215 77 53 1 1080 462 75 0 0 chr9 64987677 64987744 -59088428 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1080 420 244 44 59 chr9 64987745 64987880 -59088292 - RSINE1 SINE B4 -18 147 15 1 1080 496 261 33 8 chr9 64987896 64988016 -59088156 + ID_B1 SINE B4 74 196 -28 1 1080 240 238 24 24 chr9 64988889 64988971 -59087201 + G-rich Low_complexity Low_complexity 2 83 0 1 1080 267 209 0 43 chr9 64989068 64989138 -59087034 + (CCCCAG)n Simple_repeat Simple_repeat 4 70 0 1 1080 21 57 0 0 chr9 64989243 64989278 -59086894 + GC_rich Low_complexity Low_complexity 1 35 0 1 1080 324 188 0 0 chr9 64989281 64989345 -59086827 + (CTG)n Simple_repeat Simple_repeat 3 66 0 1 1080 804 170 7 0 chr9 64990901 64991042 -59085130 - B1_Mus2 SINE Alu -5 142 1 1 1080 268 228 18 0 chr9 64991068 64991125 -59085047 - RLTR42 LTR ERVK -82 157 100 1 1080 447 231 169 0 chr9 64991129 64991259 -59084913 - ID_B1 SINE B4 -71 153 2 1 1080 922 215 43 19 chr9 64991510 64991719 -59084453 - B3 SINE B2 -1 215 2 1 1080 283 362 65 16 chr9 64991723 64991921 -59084251 + MIRb SINE MIR 58 265 -3 1 1080 1191 43 0 0 chr9 64992760 64992899 -59083273 - B1_Mm SINE Alu -8 139 1 1 1080 893 251 99 15 chr9 64993056 64993319 -59082853 + B4A SINE B4 1 285 -7 1 1080 339 25 0 0 chr9 64993333 64993373 -59082799 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1080 605 119 10 0 chr9 64993405 64993506 -59082666 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 1 1080 354 340 123 9 chr9 64993628 64993848 -59082324 - MIR SINE MIR -8 254 10 1 1080 1457 68 10 10 chr9 64994542 64994736 -59081436 - B2_Mm2 SINE B2 -1 194 1 1 1080 870 226 135 52 chr9 64995248 64995305 -59080867 - B4A SINE B4 -14 278 221 1 1080 1050 89 7 20 chr9 64995305 64995454 -59080718 - B1_Mus1 SINE Alu 0 148 2 1 1080 870 226 135 52 chr9 64995454 64995648 -59080524 - B4A SINE B4 -72 220 6 1 1080 437 234 54 41 chr9 64995702 64995849 -59080323 + B1_Mur2 SINE Alu 1 149 0 1 1080 756 255 115 16 chr9 64996957 64997148 -59079024 + B3 SINE B2 2 211 -5 1 1080 244 350 50 10 chr9 64997343 64997444 -59078728 - MER5A1 DNA MER1_type -38 128 24 1 1080 367 325 47 57 chr9 64997520 64997732 -59078440 + MIRb SINE MIR 7 216 -52 1 1080 3452 113 29 20 chr9 64997814 64998372 -59077800 - RLTR12A LTR ERVK -5 563 1 1 1080 347 211 9 95 chr9 64998413 64998518 -59077654 + MIRb SINE MIR 40 135 -133 1 1080 480 62 0 0 chr9 64999176 64999240 -59076932 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1080 276 51 0 78 chr9 64999341 64999381 -59076791 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1 1080 275 65 22 0 chr9 64999390 64999436 -59076736 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1080 1144 54 0 26 chr9 64999436 64999578 -59076594 - B1_Mus1 SINE Alu -9 139 1 1 1080 276 51 0 78 chr9 64999578 64999601 -59076571 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1080 486 48 0 0 chr9 64999635 64999698 -59076474 - B2_Mm2 SINE B2 -131 64 2 1 1080 715 257 0 7 chr9 64999702 64999851 -59076321 - B1_Mur1 SINE Alu 0 149 2 1 1080 566 200 17 9 chr9 64999851 64999967 -59076205 - B4 SINE B4 -64 228 112 1 1080 438 162 0 0 chr9 65000000 65000068 -59076104 - B4 SINE B4 -223 69 2 1 1080 1179 54 0 0 chr9 65000127 65000274 -59075898 + B1_Mm SINE Alu 1 147 0 2 1080 878 92 0 8 chr9 65000276 65000407 -59075765 + (GAAA)n Simple_repeat Simple_repeat 1 130 0 3 1080 264 77 0 0 chr9 65000823 65000862 -59075310 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 1080 252 0 0 0 chr9 65001506 65001534 -59074638 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1080 771 69 0 0 chr9 65001745 65001847 -59074325 + (GA)n Simple_repeat Simple_repeat 1 102 0 6 1080 493 209 36 0 chr9 65003009 65003119 -59073053 - PB1D10 SINE Alu -1 116 3 7 1080 614 271 16 47 chr9 65003160 65003350 -59072822 + B3 SINE B2 26 209 -7 8 1080 1069 37 0 22 chr9 65003372 65003510 -59072662 + B1_Mm SINE Alu 1 135 -12 9 1080 323 0 48 0 chr9 65003512 65003554 -59072618 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1080 234 376 77 11 chr9 65004036 65004219 -59071953 - MIRb SINE MIR -42 226 32 1 1080 688 245 128 0 chr9 65006341 65006537 -59069635 - ID_B1 SINE B4 -2 222 2 1 1080 705 121 0 0 chr9 65006990 65007114 -59069058 + (TCC)n Simple_repeat Simple_repeat 1 124 0 1 1080 1299 89 17 0 chr9 65007114 65007294 -59068878 - B2_Mm2 SINE B2 -11 184 2 1 1080 291 54 0 0 chr9 65007323 65007360 -59068812 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1080 1144 61 0 0 chr9 65007360 65007507 -59068665 - B1_Mus2 SINE Alu 0 147 1 1 1080 931 260 22 116 chr9 65008111 65008339 -59067833 + B4A SINE B4 3 231 -61 1 1080 588 251 45 74 chr9 65008339 65008514 -59067658 + B3A SINE B2 1 169 -29 1 1080 216 86 0 0 chr9 65008514 65008549 -59067623 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1080 588 251 45 74 chr9 65008549 65008575 -59067597 + B3A SINE B2 170 195 -3 1 1080 931 260 22 116 chr9 65008575 65008664 -59067508 + B4A SINE B4 232 290 -2 1 1080 623 209 243 0 chr9 65009288 65009465 -59066707 - ID_B1 SINE B4 -3 221 2 2 1080 22 56 0 0 chr9 65010668 65010704 -59065468 + GC_rich Low_complexity Low_complexity 1 36 0 2 1080 249 351 60 50 chr9 65011329 65011506 -59064666 + MER5A DNA MER1_type 1 187 -2 2 1080 248 273 0 57 chr9 65011605 65011675 -59064497 + BC1_Mm scRNA scRNA 1 66 -86 2 16 963 233 19 0 chr9 65011615 65011825 -59064347 + ID_B1 SINE B4 8 221 -3 2 1081 376 201 22 56 chr9 65012151 65012254 -59063918 + B1_Mur2 SINE Alu 18 117 -3 2 1081 634 249 110 11 chr9 65012254 65012445 -59063727 + B3 SINE B2 6 215 -1 2 1081 737 150 25 0 chr9 65012467 65012587 -59063585 + B1_Mur4 SINE Alu 28 150 0 2 1081 742 185 62 34 chr9 65012777 65012956 -59063216 + B2_Mm2 SINE B2 2 185 -10 2 1081 276 149 0 0 chr9 65012975 65013022 -59063150 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1081 647 268 35 12 chr9 65013654 65013824 -59062348 - B3A SINE B2 -22 176 3 3 1081 212 0 36 0 chr9 65013832 65013860 -59062312 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1081 790 201 145 0 chr9 65013866 65014045 -59062127 - ID_B1 SINE B4 -16 208 4 3 1081 205 284 13 39 chr9 65014669 65014746 -59061426 - MIR SINE MIR -71 137 63 3 1081 202 51 50 25 chr9 65015209 65015249 -59060923 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 1081 345 320 48 16 chr9 65015252 65015376 -59060796 + MIRb SINE MIR 3 130 -138 3 1081 854 115 0 28 chr9 65015457 65015600 -59060572 - B1_Mus1 SINE Alu -1 147 9 3 1081 413 192 43 137 chr9 65015502 65015641 -59060531 - MT2B LTR ERVL -345 256 131 3 1081 994 192 86 0 chr9 65015646 65015833 -59060339 - B3 SINE B2 -12 204 2 3 1081 1227 105 5 5 chr9 65015987 65016179 -59059993 - B2_Mm1a SINE B2 0 193 2 3 1081 240 127 70 35 chr9 65016385 65016442 -59059730 + G-rich Low_complexity Low_complexity 3 61 0 4 1081 180 0 0 0 chr9 65018048 65018068 -59058104 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4 1081 294 246 0 14 chr9 65018068 65018138 -59058034 + B4A SINE B4 224 292 0 4 1081 575 252 9 2 chr9 65018219 65018366 -59057806 + ID_B1 SINE B4 78 220 -4 4 1081 249 309 34 74 chr9 65018250 65018425 -59057747 - YREP_Mm Unknown Unknown -1518 294 127 4 1081 188 67 0 32 chr9 65018464 65018495 -59057677 + (TTA)n Simple_repeat Simple_repeat 2 31 0 4 1081 968 123 14 0 chr9 65018602 65018748 -59057424 - B1_Mur4 SINE Alu 0 150 3 4 1081 639 259 70 86 chr9 65018826 65019012 -59057160 - B3A SINE B2 -5 193 11 4 1081 398 314 72 14 chr9 65019125 65019264 -59056908 - ID_B1 SINE B4 -1 223 77 4 1081 1521 33 0 0 chr9 65019306 65019487 -59056685 - B2_Mm1a SINE B2 -10 183 3 4 1081 794 197 0 39 chr9 65019551 65019600 -59056572 + B1_Mur4 SINE Alu 3 46 -104 5 1081 1800 133 36 60 chr9 65019600 65019935 -59056237 + ORR1A2 LTR MaLR 1 327 0 5 1081 794 197 0 39 chr9 65019935 65020038 -59056134 + B1_Mur4 SINE Alu 47 149 -1 5 1081 468 91 0 0 chr9 65020038 65020104 -59056068 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 5 1081 235 189 0 0 chr9 65020108 65020166 -59056006 - MER33 DNA MER1_type -216 108 51 5 1081 288 0 0 0 chr9 65020241 65020273 -59055899 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1081 342 0 0 0 chr9 65020273 65020310 -59055862 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1081 417 294 9 0 chr9 65021317 65021426 -59054746 - PB1D10 SINE Alu -7 110 1 5 1081 441 218 26 43 chr9 65021454 65021569 -59054603 + PB1D10 SINE Alu 5 117 0 5 1081 318 87 0 0 chr9 65021591 65021637 -59054535 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1081 783 18 243 0 chr9 65022035 65022146 -59054026 + B1_Mus1 SINE Alu 2 139 -9 5 1081 387 0 0 0 chr9 65022146 65022189 -59053983 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1081 504 48 0 0 chr9 65022192 65022255 -59053917 + (GAAAA)n Simple_repeat Simple_repeat 4 66 0 6 1081 965 187 33 14 chr9 65022262 65022474 -59053698 + B3 SINE B2 1 216 0 6 1081 992 123 0 14 chr9 65022500 65022648 -59053524 - B1_Mus1 SINE Alu -2 146 1 6 1081 1035 152 0 0 chr9 65022678 65022856 -59053316 + GA-rich Low_complexity Low_complexity 3 180 0 6 1081 189 0 0 0 chr9 65023082 65023103 -59053069 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1081 202 139 0 0 chr9 65024623 65024659 -59051513 + MIR SINE MIR 110 145 -63 6 1081 352 308 32 71 chr9 65024848 65025002 -59051170 - RMER30 DNA MER1_type -34 168 21 6 1081 1296 168 5 5 chr9 65027294 65027515 -59048657 - URR1B DNA MER1_type -1 224 4 6 1081 233 274 130 87 chr9 65027524 65027616 -59048556 + PB1D10 SINE Alu 21 116 -1 6 1081 2004 89 7 0 chr9 65029955 65030247 -59045925 - ORR1A2 LTR MaLR -33 294 1 7 1081 244 274 13 52 chr9 65030284 65030361 -59045811 + MER91A DNA Tip100 1 74 -122 7 1081 227 380 0 61 chr9 65031053 65031081 -59045091 + MIRb SINE MIR 104 126 -142 7 1081 221 0 0 33 chr9 65031081 65031111 -59045061 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1081 227 380 0 61 chr9 65031111 65031180 -59044992 + MIRb SINE MIR 127 195 -73 7 1081 1028 209 47 0 chr9 65031213 65031424 -59044748 + ID_B1 SINE B4 3 223 -1 7 1081 310 167 0 0 chr9 65032244 65032298 -59043874 - RMER30 DNA MER1_type -44 158 105 7 1081 322 281 71 11 chr9 65032308 65032434 -59043738 + PB1D7 SINE Alu 10 149 -1 7 1081 1176 54 0 0 chr9 65032448 65032595 -59043577 + B1_Mus2 SINE Alu 1 147 0 7 1081 742 187 29 0 chr9 65032622 65032761 -59043411 + B1_Mur1 SINE Alu 7 149 0 7 1081 246 179 0 0 chr9 65033666 65033722 -59042450 + A-rich Low_complexity Low_complexity 1 56 0 7 1081 270 0 0 0 chr9 65034846 65034876 -59041296 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1081 386 200 13 0 chr9 65035105 65035180 -59040992 + ID SINE ID 14 89 -135 8 1081 207 0 0 0 chr9 65035180 65035203 -59040969 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1081 1120 81 0 0 chr9 65035203 65035351 -59040821 - B1_Mus1 SINE Alu 0 148 1 8 1081 371 270 15 96 chr9 65035434 65035479 -59040693 + B4A SINE B4 81 125 -167 8 1081 3361 25 2 0 chr9 65035479 65035874 -59040298 - MTA_Mm LTR MaLR 0 396 1 8 1081 371 270 15 96 chr9 65035874 65035963 -59040209 + B4A SINE B4 126 204 -88 8 1081 234 300 0 0 chr9 65036059 65036119 -59040053 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1081 376 193 91 0 chr9 65036142 65036230 -59039942 + ID_B1 SINE B4 127 222 -2 8 1081 311 230 135 22 chr9 65036238 65036327 -59039845 + RSINE1 SINE B4 4 102 -63 8 1081 280 66 0 32 chr9 65036338 65036401 -59039771 - L1_Mus1 LINE L1 -59 6508 6448 8 1081 362 243 0 26 chr9 65036401 65036477 -59039695 + RSINE1 SINE B4 92 165 0 8 1081 439 204 58 0 chr9 65037443 65037555 -59038617 - Lx9 LINE L1 -6 7638 7519 8 1081 378 0 0 0 chr9 65037555 65037597 -59038575 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1081 439 54 1 0 chr9 65037597 65037638 -59038534 - Lx9 LINE L1 -126 7518 7441 8 1081 239 54 27 0 chr9 65037639 65037676 -59038496 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 9 1081 880 82 0 0 chr9 65037822 65037944 -59038228 + B1_Mus1 SINE Alu 18 139 -9 9 1081 306 0 0 0 chr9 65037944 65037978 -59038194 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1081 197 248 65 101 chr9 65038004 65038143 -59038029 + MIRc SINE MIR 42 178 -98 9 1081 222 273 15 0 chr9 65038547 65038613 -59037559 + GA-rich Low_complexity Low_complexity 1 67 0 9 1081 573 221 56 28 chr9 65038628 65038772 -59037400 + B1_Mur1 SINE Alu 2 149 0 9 1081 222 118 0 0 chr9 65038853 65038887 -59037285 + (TAA)n Simple_repeat Simple_repeat 2 35 0 9 1081 374 230 11 11 chr9 65038887 65038975 -59037197 + B4A SINE B4 2 89 -203 9 1081 207 0 0 0 chr9 65039171 65039194 -59036978 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1081 203 283 0 0 chr9 65039401 65039447 -59036725 + L2c LINE L2 3331 3376 -11 1 1081 330 243 0 3 chr9 65039487 65039575 -59036597 + ID4_ SINE ID 8 94 -58 1 1081 410 150 12 24 chr9 65040462 65040544 -59035628 + B4 SINE B4 144 224 -68 1 1081 462 234 53 0 chr9 65040585 65040679 -59035493 + B1_Mur2 SINE Alu 2 100 -49 1 1081 288 320 46 39 chr9 65040679 65040709 -59035463 + ID_B1 SINE B4 96 208 -16 1 1081 235 174 0 0 chr9 65040742 65040788 -59035384 + Lx8 LINE L1 7423 7468 -5 1 1081 28 29 0 0 chr9 65040789 65040824 -59035348 + AT_rich Low_complexity Low_complexity 1 35 0 1 1081 1178 48 0 0 chr9 65040934 65041080 -59035092 - B1_Mm SINE Alu -1 146 1 1 1081 228 279 63 0 chr9 65042190 65042269 -59033903 + PB1D10 SINE Alu 33 116 -1 1 1081 451 110 0 68 chr9 65042269 65042386 -59033786 + GA-rich Low_complexity Low_complexity 1 109 0 1 1081 213 283 0 0 chr9 65042435 65042488 -59033684 - MIRc SINE MIR -114 154 102 1 1081 212 259 155 0 chr9 65044161 65044219 -59031953 - B1_Mur2 SINE Alu -41 108 42 1 1081 903 43 0 8 chr9 65044377 65044494 -59031678 - U5 snRNA snRNA 0 116 1 1 1081 380 244 13 0 chr9 65044889 65044967 -59031205 - ID4_ SINE ID -3 80 2 1 1081 1470 64 0 0 chr9 65045219 65045407 -59030765 + B2_Mm1t SINE B2 2 189 -4 1 1081 624 160 90 60 chr9 65045418 65045551 -59030621 + B1_Mur2 SINE Alu 1 137 -12 1 1081 378 107 0 0 chr9 65045551 65045607 -59030565 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 1 1081 274 336 17 52 chr9 65045748 65045780 -59030392 - ID_B1 SINE B4 -30 194 84 1 1081 299 313 24 0 chr9 65045780 65045863 -59030309 - PB1D10 SINE Alu -30 87 3 1 1081 1032 77 0 7 chr9 65046155 65046299 -59029873 - B2_Mm1t SINE B2 -14 179 37 1 1081 972 108 13 13 chr9 65046335 65046347 -59029825 - B1_Mur4 SINE Alu 0 150 140 1 1081 198 0 0 0 chr9 65046347 65046369 -59029803 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1081 972 108 13 13 chr9 65046369 65046506 -59029666 - B1_Mur4 SINE Alu -11 139 1 1 1081 538 237 247 6 chr9 65046508 65046682 -59029490 - B3 SINE B2 0 216 1 1 1081 728 162 73 0 chr9 65046950 65047086 -59029086 + B1_Mus2 SINE Alu 2 147 0 1 1081 504 45 0 0 chr9 65047123 65047190 -59028982 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1081 523 214 19 0 chr9 65047206 65047309 -59028863 + PB1D9 SINE Alu 11 115 -5 1 1081 231 36 0 0 chr9 65047313 65047341 -59028831 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1081 376 161 0 0 chr9 65047458 65047520 -59028652 - B3 SINE B2 -154 62 1 1 1081 653 227 15 0 chr9 65047551 65047683 -59028489 - RSINE1 SINE B4 -4 161 28 1 1081 704 209 98 36 chr9 65048450 65048644 -59027528 - B3 SINE B2 -10 206 1 1 1081 209 109 21 42 chr9 65048676 65048724 -59027448 + T-rich Low_complexity Low_complexity 2 48 0 1 1081 400 141 12 60 chr9 65048724 65048807 -59027365 - B1_Mur3 SINE Alu 0 149 71 1 1081 249 33 0 0 chr9 65049045 65049075 -59027097 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1081 999 95 0 13 chr9 65049091 65049241 -59026931 + B1_Mus1 SINE Alu 1 148 0 1 1081 1185 130 0 15 chr9 65049246 65049441 -59026731 + B2_Mm1a SINE B2 2 193 0 1 1081 909 35 0 9 chr9 65049532 65049648 -59026524 - U5 snRNA snRNA -1 115 1 1 1081 480 59 0 0 chr9 65050297 65050365 -59025807 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1081 305 231 167 0 chr9 65050373 65050451 -59025721 - B3A SINE B2 -72 126 36 1 1081 630 0 0 0 chr9 65050457 65050527 -59025645 + (TGG)n Simple_repeat Simple_repeat 3 72 0 1 1081 712 179 15 7 chr9 65050528 65050663 -59025509 - B1_Mus2 SINE Alu -7 140 5 1 1081 25 0 0 0 chr9 65050663 65050688 -59025484 + AT_rich Low_complexity Low_complexity 1 25 0 1 1081 246 132 0 0 chr9 65050718 65050771 -59025401 + (A)n Simple_repeat Simple_repeat 1 53 0 1 1081 230 0 33 0 chr9 65050808 65050838 -59025334 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1081 1093 37 0 7 chr9 65050838 65050975 -59025197 - B1_Mus2 SINE Alu -10 137 2 1 1081 405 279 36 48 chr9 65050997 65051171 -59025001 - B3A SINE B2 0 216 50 1 1081 276 333 35 18 chr9 65051138 65051251 -59024921 + B3A SINE B2 82 196 -2 1 1081 23 0 0 0 chr9 65051268 65051291 -59024881 + AT_rich Low_complexity Low_complexity 1 23 0 1 1081 517 252 30 30 chr9 65051291 65051422 -59024750 - B1_Mur3 SINE Alu -10 139 9 1 1081 271 361 0 12 chr9 65051485 65051569 -59024603 + ID SINE ID 2 84 -140 1 1081 1024 168 27 9 chr9 65051576 65051798 -59024374 - RLTR12A LTR ERVK 0 568 343 1 1081 503 219 8 26 chr9 65051837 65051954 -59024218 + ID_B1 SINE B4 110 224 0 1 1081 605 237 0 0 chr9 65051973 65052091 -59024081 + RSINE1 SINE B4 11 128 -37 1 1081 207 0 0 0 chr9 65052097 65052120 -59024052 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1081 995 129 5 132 chr9 65052130 65052296 -59023876 - B2_Mm2 SINE B2 -15 180 38 1 1081 4551 53 22 2 chr9 65052296 65052899 -59023273 - L1_Mus3 LINE L1 -4 6634 6020 1 1081 995 129 5 132 chr9 65052899 65052937 -59023235 - B2_Mm2 SINE B2 -158 37 2 1 1081 537 211 61 23 chr9 65053669 65053800 -59022372 - B1_Mur1 SINE Alu 0 149 14 1 1081 242 287 68 74 chr9 65053800 65053831 -59022341 - ID_B1 SINE B4 0 224 64 1 1081 353 306 57 75 chr9 65054101 65054260 -59021912 - RSINE1 SINE B4 0 165 10 1 1081 208 121 0 0 chr9 65054268 65054301 -59021871 + (TTTTTG)n Simple_repeat Simple_repeat 5 37 0 1 1081 538 129 139 0 chr9 65054302 65054403 -59021769 - B1_Mm SINE Alu 0 147 33 1 1081 236 184 0 20 chr9 65054434 65054484 -59021688 - ORR1A4 LTR MaLR 0 394 346 1 1081 351 0 0 0 chr9 65054484 65054523 -59021649 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1081 1078 89 6 6 chr9 65054524 65054682 -59021490 - B2_Mm2 SINE B2 -37 158 1 1 1081 1142 165 0 10 chr9 65054682 65054877 -59021295 - ORR1A4 LTR MaLR -43 286 94 1 1081 773 180 125 6 chr9 65054879 65055047 -59021125 - ORR1B1 LTR MaLR -186 208 21 1 1081 489 243 78 34 chr9 65055051 65055230 -59020942 - B3A SINE B2 -3 195 9 1 1081 1572 240 64 129 chr9 65055242 65055839 -59020333 + RLTR1D LTR ERV1 48 605 0 1 1081 4240 131 93 90 chr9 65056048 65056951 -59019221 + RMER17A2 LTR ERVK 1 906 0 1 1081 431 262 40 24 chr9 65057013 65057138 -59019034 + B4 SINE B4 1 127 -165 1 1081 358 278 20 20 chr9 65057155 65057254 -59018918 + B4A SINE B4 184 282 -10 1 1081 399 265 59 39 chr9 65057356 65057458 -59018714 + B1F SINE Alu 1 104 -45 1 1081 351 179 0 0 chr9 65057497 65057564 -59018608 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1081 999 61 8 0 chr9 65057576 65057707 -59018465 - B1_Mus1 SINE Alu -1 147 16 1 1081 434 279 64 58 chr9 65057735 65057891 -59018281 - B3A SINE B2 -41 157 1 1 1081 253 359 9 0 chr9 65057896 65058002 -59018170 + L1M4b LINE L1 595 701 -6633 1 1081 252 338 0 0 chr9 65058083 65058154 -59018018 + ID4 SINE ID 12 82 -1 1 1081 205 209 23 0 chr9 65058154 65058197 -59017975 + (CAA)n Simple_repeat Simple_repeat 1 44 0 1 1081 450 195 127 45 chr9 65058488 65058622 -59017550 + B1F SINE Alu 5 149 0 1 1081 342 273 73 80 chr9 65058637 65058788 -59017384 + L1M4b LINE L1 1420 1569 -5765 1 1081 327 195 75 38 chr9 65058790 65058870 -59017302 + B1F SINE Alu 48 130 -19 1 1081 30 0 0 0 chr9 65059085 65059115 -59017057 + AT_rich Low_complexity Low_complexity 1 30 0 1 1081 653 155 67 33 chr9 65059116 65059236 -59016936 - B1_Mur3 SINE Alu -1 148 25 1 1081 33 25 0 0 chr9 65059236 65059276 -59016896 + AT_rich Low_complexity Low_complexity 1 40 0 1 1081 552 30 0 0 chr9 65059295 65059361 -59016811 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1081 702 209 81 7 chr9 65059389 65059538 -59016634 - B3 SINE B2 -46 170 11 1 1081 379 228 77 24 chr9 65059541 65059692 -59016480 + L1M4b LINE L1 2086 2241 -4767 1 1081 286 158 123 47 chr9 65059908 65060014 -59016158 + L1M4b LINE L1 2734 2847 -4487 1 1081 1417 75 26 5 chr9 65060053 65060242 -59015930 + B2_Mm2 SINE B2 2 194 -1 1 1081 981 241 35 0 chr9 65060253 65060456 -59015716 - B3 SINE B2 0 216 7 1 1081 720 241 50 74 chr9 65060480 65060682 -59015490 - B3A SINE B2 0 198 2 1 1081 1128 54 54 0 chr9 65060690 65060839 -59015333 - B2_Mm2 SINE B2 -7 188 32 1 1081 228 35 0 0 chr9 65060842 65060871 -59015301 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1081 232 105 0 73 chr9 65060913 65060954 -59015218 - B2_Mm2 SINE B2 -156 39 2 1 1081 198 0 0 0 chr9 65061395 65061417 -59014755 + (TTTTTG)n Simple_repeat Simple_repeat 6 27 0 1 1081 920 136 14 7 chr9 65061439 65061587 -59014585 - B1_Mur4 SINE Alu 0 150 2 1 1081 26 0 0 0 chr9 65061723 65061749 -59014423 + AT_rich Low_complexity Low_complexity 1 26 0 1 1081 808 76 0 0 chr9 65061749 65061854 -59014318 - B1_Mm SINE Alu 0 147 43 1 1081 319 129 0 90 chr9 65061891 65061962 -59014210 - B2_Mm2 SINE B2 -107 109 47 1 1081 1209 112 6 0 chr9 65062013 65062182 -59013990 - B2_Mm1t SINE B2 -22 171 2 1 1081 235 288 107 84 chr9 65062186 65062364 -59013808 - B3A SINE B2 -6 192 11 1 1081 584 238 18 74 chr9 65062213 65062376 -59013796 - RSINE1 SINE B4 -8 157 4 1 1081 211 220 53 42 chr9 65062827 65062922 -59013250 + (CGGG)n Simple_repeat Simple_repeat 4 99 0 1 1081 384 247 144 0 chr9 65064073 65064170 -59012002 + PB1D7 SINE Alu 9 119 -1 1 1081 264 366 9 38 chr9 65064269 65064374 -59011798 + PB1D10 SINE Alu 1 102 -15 1 1081 446 275 22 37 chr9 65064280 65064416 -59011756 + ID_B1 SINE B4 90 223 -1 1 1081 287 322 25 127 chr9 65064439 65064527 -59011645 + L1M5 LINE L1 3649 3736 -2410 1 1081 1001 186 93 0 chr9 65064527 65064721 -59011451 + B3 SINE B2 2 213 -3 2 1081 287 322 25 127 chr9 65064721 65064877 -59011295 + L1M5 LINE L1 3737 3868 -2278 1 1081 727 222 38 12 chr9 65066052 65066212 -59009960 + RSINE1 SINE B4 2 165 0 2 1081 410 242 158 0 chr9 65066215 65066310 -59009862 + B1_Mur1 SINE Alu 39 148 -1 2 1081 288 0 0 0 chr9 65066323 65066355 -59009817 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2 1081 593 237 231 29 chr9 65066562 65066805 -59009367 - B4A SINE B4 0 292 1 2 1081 236 333 0 25 chr9 65066823 65066903 -59009269 - ID4_ SINE ID -1 82 5 2 1081 365 229 175 10 chr9 65066897 65066994 -59009178 - PB1D10 SINE Alu -33 116 4 2 1081 256 350 41 8 chr9 65067220 65067341 -59008831 - MER5B DNA MER1_type -4 174 50 2 1081 269 347 55 68 chr9 65067346 65067524 -59008648 - MamGypLTR2 LTR Gypsy -38 1151 975 2 1081 1541 62 0 5 chr9 65067524 65067719 -59008453 - B2_Mm2 SINE B2 -1 194 1 2 1081 269 347 55 68 chr9 65067719 65067775 -59008397 - MamGypLTR2 LTR Gypsy -215 974 920 2 1081 385 256 0 25 chr9 65067882 65067962 -59008210 - ID SINE ID -142 82 5 2 1081 525 238 8 54 chr9 65067997 65068126 -59008046 - RSINE1 SINE B4 0 165 43 2 1081 524 66 26 0 chr9 65068237 65068313 -59007859 + (TATG)n Simple_repeat Simple_repeat 1 78 0 2 1081 1146 105 48 32 chr9 65068314 65068501 -59007671 - B2_Mm2 SINE B2 -4 191 2 2 1081 263 290 119 18 chr9 65069223 65069332 -59006840 + PB1D7 SINE Alu 1 120 0 2 1081 282 164 0 0 chr9 65069453 65069508 -59006664 + CT-rich Low_complexity Low_complexity 3 57 0 2 1081 21 0 0 0 chr9 65069520 65069541 -59006631 + AT_rich Low_complexity Low_complexity 1 21 0 2 1081 800 85 0 0 chr9 65069541 65069647 -59006525 - B1_Mus2 SINE Alu -3 144 39 2 1081 306 181 52 95 chr9 65069581 65069697 -59006475 - RLTR25B LTR ERVK -519 509 399 2 1081 283 294 0 0 chr9 65069649 65069717 -59006455 - PB1D10 SINE Alu 0 117 50 2 1081 481 315 43 29 chr9 65069775 65069953 -59006219 - B3A SINE B2 -14 181 2 2 1081 186 43 0 0 chr9 65070621 65070644 -59005528 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1081 1257 48 0 0 chr9 65070644 65070790 -59005382 - B1_Mus2 SINE Alu 0 147 2 2 1081 215 309 30 60 chr9 65070800 65070900 -59005272 + MIRb SINE MIR 65 161 -107 2 1081 1836 145 83 3 chr9 65070905 65071217 -59004955 - ORR1A1 LTR MaLR -8 338 2 2 1081 222 37 0 0 chr9 65071221 65071248 -59004924 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 1081 888 127 8 0 chr9 65071248 65071382 -59004790 - B1_Mur4 SINE Alu -10 140 6 2 1081 621 242 113 21 chr9 65071408 65071594 -59004578 + ID_B1 SINE B4 7 209 -15 2 1081 319 301 11 3 chr9 65071625 65071713 -59004459 - B1_Mur2 SINE Alu -11 138 48 2 1081 305 203 0 0 chr9 65071772 65071831 -59004341 + MER53 DNA hAT 134 192 -1 2 1081 215 258 16 16 chr9 65072314 65072377 -59003795 + CT-rich Low_complexity Low_complexity 1 63 0 2 1081 302 250 89 107 chr9 65072377 65072489 -59003683 - ID_B1 SINE B4 -2 222 113 2 1081 435 254 29 0 chr9 65072544 65072660 -59003512 - PB1D7 SINE Alu 0 120 1 2 1081 390 275 0 0 chr9 65072671 65072751 -59003421 - ID4_ SINE ID 0 83 4 2 1081 333 0 0 0 chr9 65072756 65072793 -59003379 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 1081 1332 92 16 0 chr9 65072827 65073011 -59003161 - B2_Mm2 SINE B2 -2 193 7 2 1081 224 235 53 93 chr9 65073020 65073095 -59003077 - PB1D10 SINE Alu -6 111 40 2 1081 351 0 0 0 chr9 65073147 65073186 -59002986 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1081 728 197 50 28 chr9 65073198 65073339 -59002833 - RSINE1 SINE B4 -21 144 1 2 1081 249 111 0 0 chr9 65073410 65073446 -59002726 + L2b LINE L2 3320 3355 -20 2 1081 213 216 36 126 chr9 65074023 65074134 -59002038 - MER5A DNA MER1_type -4 174 74 2 1081 264 303 0 15 chr9 65074293 65074360 -59001812 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 2 1081 184 79 0 73 chr9 65074361 65074402 -59001770 + G-rich Low_complexity Low_complexity 3 40 0 2 1081 551 208 128 40 chr9 65074787 65074912 -59001260 - RSINE1 SINE B4 -27 138 3 2 1081 1504 45 17 0 chr9 65075044 65075222 -59000950 + B2_Mm2 SINE B2 1 181 -14 2 1081 1208 62 0 14 chr9 65075222 65075369 -59000803 + B1_Mus2 SINE Alu 2 146 -1 2 1081 366 119 0 0 chr9 65075610 65075657 -59000515 + (TCC)n Simple_repeat Simple_repeat 1 47 0 2 1081 1104 111 83 0 chr9 65075657 65075837 -59000335 - B2_Mm2 SINE B2 0 195 1 2 1081 366 119 0 0 chr9 65075837 65075848 -59000324 + (TCC)n Simple_repeat Simple_repeat 2 12 0 2 1081 1090 174 9 70 chr9 65076036 65076205 -58999967 - B3 SINE B2 0 216 55 2 1081 3174 73 0 2 chr9 65076205 65076602 -58999570 + MTA_Mm LTR MaLR 1 396 0 2 1081 1090 174 9 70 chr9 65076602 65076661 -58999511 - B3 SINE B2 -162 54 2 2 1081 405 295 71 0 chr9 65076666 65076778 -58999394 - PB1D7 SINE Alu 0 120 1 2 1081 820 211 34 82 chr9 65077076 65077283 -58998889 + B3A SINE B2 1 197 -1 2 1081 231 167 0 85 chr9 65077294 65077353 -58998819 - Charlie18a DNA MER1_type -49 293 240 2 1081 545 193 17 52 chr9 65077413 65077528 -58998644 - ID_B1 SINE B4 -26 198 88 2 1081 293 286 0 0 chr9 65078086 65078149 -58998023 + MER5B DNA MER1_type 1 63 -115 2 1081 637 276 104 0 chr9 65078150 65078342 -58997830 + B3 SINE B2 1 212 -4 2 1081 1000 249 5 5 chr9 65078376 65078594 -58997578 + ID_B1 SINE B4 2 219 -5 2 1081 324 252 89 20 chr9 65078598 65078699 -58997473 + MER5B DNA MER1_type 49 156 -22 2 1081 263 240 116 107 chr9 65078716 65078828 -58997344 + MER5A1 DNA MER1_type 14 126 -40 2 1081 236 185 42 147 chr9 65079764 65079859 -58996313 + B4A SINE B4 1 85 -207 2 1081 213 318 0 23 chr9 65079914 65080001 -58996171 + (CGTG)n Simple_repeat Simple_repeat 3 87 0 2 1081 872 237 195 4 chr9 65080322 65080568 -58995604 - ORR1D2 LTR MaLR -77 293 1 2 1081 1322 116 24 14 chr9 65080715 65080925 -58995247 - ORR1B2 LTR MaLR -97 270 59 2 1081 216 0 0 0 chr9 65080961 65080985 -58995187 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1081 328 159 29 14 chr9 65080985 65081055 -58995117 - ID4 SINE ID -11 72 2 2 1081 181 274 59 0 chr9 65081103 65081154 -58995018 - MIR SINE MIR -113 149 96 2 1081 813 145 8 0 chr9 65081824 65081948 -58994224 + B1_Mus1 SINE Alu 24 148 0 2 1081 1697 31 0 0 chr9 65081976 65082169 -58994003 + B2_Mm1a SINE B2 1 193 0 2 1081 934 254 14 9 chr9 65082302 65082517 -58993655 + B3 SINE B2 1 216 0 2 1081 768 225 33 137 chr9 65083110 65083321 -58992851 + ID_B1 SINE B4 33 221 -3 2 1081 681 250 28 0 chr9 65083333 65083477 -58992695 + B1_Mur1 SINE Alu 1 148 -1 2 1081 657 179 0 94 chr9 65083628 65083788 -58992384 - B1_Mur2 SINE Alu -1 148 4 2 1081 654 258 123 4 chr9 65083851 65084068 -58992104 + ID_B1 SINE B4 7 244 -48 2 1081 390 21 0 0 chr9 65084819 65084866 -58991306 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1081 261 0 0 0 chr9 65084866 65084895 -58991277 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1081 292 236 0 0 chr9 65084900 65084955 -58991217 - B3A SINE B2 -51 147 93 2 1081 477 250 21 0 chr9 65085061 65085157 -58991015 + RSINE1 SINE B4 25 122 -43 2 1081 567 29 0 0 chr9 65085160 65085229 -58990943 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1081 288 272 128 26 chr9 65087123 65087240 -58988932 - ORR1D2 LTR MaLR -241 129 1 2 1081 238 291 116 0 chr9 65087280 65087366 -58988806 - L2b LINE L2 -252 3123 3028 2 1081 705 245 0 20 chr9 65087449 65087599 -58988573 - ID_B1 SINE B4 0 224 78 2 1081 213 233 50 109 chr9 65087593 65087617 -58988555 - BC1_Mm scRNA scRNA -48 104 86 2 1081 875 220 32 41 chr9 65087617 65087835 -58988337 - B3 SINE B2 0 216 1 2 1081 251 239 46 97 chr9 65087835 65087920 -58988252 - ID4 SINE ID -67 85 1 2 1081 255 172 15 108 chr9 65089210 65089275 -58986897 + RLTR25A LTR ERVK 501 559 -544 2 1081 515 171 2 14 chr9 65089224 65089324 -58986848 + PB1D9 SINE Alu 35 128 -21 2 1081 263 235 0 19 chr9 65089422 65089474 -58986698 - PB1D7 SINE Alu -27 93 43 2 1081 1075 69 28 0 chr9 65089503 65089647 -58986525 - B1_Mus1 SINE Alu 0 148 1 2 1081 1451 74 16 0 chr9 65089716 65089906 -58986266 - B2_Mm2 SINE B2 -1 194 2 2 1081 287 274 123 0 chr9 65090265 65090371 -58985801 - PB1D7 SINE Alu 0 120 2 2 1081 1029 218 19 5 chr9 65091506 65091713 -58984459 - ID_B1 SINE B4 0 224 15 2 1081 188 306 40 40 chr9 65092892 65092967 -58983205 - L2b LINE L2 -2 3373 3299 2 1081 1387 89 21 5 chr9 65093232 65093423 -58982749 + B2_Mm2 SINE B2 2 195 0 2 1081 1263 54 0 0 chr9 65093532 65093680 -58982492 - B1_Mus1 SINE Alu 0 148 1 2 1081 300 53 0 0 chr9 65093705 65093743 -58982429 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1081 765 150 0 0 chr9 65093745 65093878 -58982294 + GA-rich Low_complexity Low_complexity 2 134 0 2 1081 614 205 110 8 chr9 65093879 65093997 -58982175 - RSINE1 SINE B4 -34 131 2 2 1081 291 71 0 0 chr9 65094001 65094043 -58982129 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 1081 1021 25 0 0 chr9 65094043 65094165 -58982007 - B1_Mus2 SINE Alu -3 144 23 2 1081 208 219 73 0 chr9 65094273 65094314 -58981858 + MIRm SINE MIR 223 266 -10 2 1081 568 250 32 0 chr9 65095231 65095355 -58980817 - B1F SINE Alu -19 130 3 2 1081 1182 61 0 7 chr9 65096524 65096673 -58979499 - B1_Mus1 SINE Alu 0 148 1 3 1081 193 395 12 0 chr9 65096748 65096834 -58979338 - L2b LINE L2 -30 3345 3259 3 1081 1640 31 0 20 chr9 65096967 65097164 -58979008 + B2_Mm1a SINE B2 1 193 0 3 1081 321 267 38 88 chr9 65097462 65097622 -58978550 + L1M3 LINE L1 3547 3701 -2442 3 1081 377 230 0 22 chr9 65097637 65097740 -58978432 + B1F SINE Alu 30 128 -20 3 1081 252 211 0 0 chr9 65097754 65097825 -58978347 + GA-rich Low_complexity Low_complexity 2 72 0 3 1081 195 42 0 0 chr9 65097909 65097933 -58978239 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 3 1081 398 279 54 9 chr9 65097954 65098066 -58978106 - RSINE1 SINE B4 -46 119 3 3 1081 450 0 0 0 chr9 65098220 65098270 -58977902 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1081 213 196 0 0 chr9 65098730 65098776 -58977396 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1081 719 225 31 6 chr9 65098856 65099017 -58977155 - B4 SINE B4 -125 167 3 3 1081 796 144 8 0 chr9 65099043 65099161 -58977011 - PB1D9 SINE Alu 0 120 2 3 1081 252 145 0 74 chr9 65099171 65099266 -58976906 - B2_Mm2 SINE B2 -10 185 47 3 1081 1294 81 29 0 chr9 65099298 65099471 -58976701 - B2_Mm1t SINE B2 -14 179 2 3 1081 531 0 0 0 chr9 65099525 65099584 -58976588 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 1081 1264 206 9 0 chr9 65099664 65099883 -58976289 + ID_B1 SINE B4 2 222 -2 3 1081 233 289 53 0 chr9 65100035 65100111 -58976061 + L2 LINE L2 2782 2861 -558 3 1081 445 257 67 79 chr9 65100402 65100567 -58975605 + RSINE1 SINE B4 3 165 0 3 1081 22 35 0 0 chr9 65100573 65100602 -58975570 + AT_rich Low_complexity Low_complexity 1 29 0 3 1081 330 271 35 0 chr9 65100646 65100731 -58975441 + PB1 SINE Alu 14 101 -26 3 1081 904 97 6 154 chr9 65100889 65101071 -58975101 + B2_Mm1a SINE B2 1 155 -38 3 1081 318 50 0 0 chr9 65101072 65101112 -58975060 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 3 1081 770 113 0 0 chr9 65101137 65101243 -58974929 + B1_Mus1 SINE Alu 2 107 -41 3 1081 469 232 18 61 chr9 65101238 65101385 -58974787 + PB1D10 SINE Alu 15 149 0 3 1081 393 333 41 7 chr9 65101393 65101531 -58974641 + MLT1G3 LTR MaLR 257 399 -196 3 1081 365 245 9 29 chr9 65101531 65101636 -58974536 - MLT1A1 LTR MaLR -1 407 305 3 1081 261 294 94 32 chr9 65101789 65101945 -58974227 + MLT1F2 LTR MaLR 337 551 -9 3 1081 492 252 36 9 chr9 65101964 65102076 -58974096 - PB1D10 SINE Alu -2 115 1 3 1081 593 244 183 22 chr9 65102297 65102477 -58973695 + ID_B1 SINE B4 16 224 0 3 1081 286 304 83 51 chr9 65102499 65102655 -58973517 + Charlie4z DNA MER1_type 6 166 -1 3 1081 833 162 14 42 chr9 65102910 65103052 -58973120 + B1_Mus1 SINE Alu 5 142 -6 3 1081 328 326 11 0 chr9 65103097 65103186 -58972986 + B1F SINE Alu 6 95 -54 3 1081 680 243 0 33 chr9 65103274 65103427 -58972745 - B1_Mur1 SINE Alu -1 148 1 3 1081 434 269 53 77 chr9 65103437 65103606 -58972566 - RSINE1 SINE B4 0 165 1 3 1081 258 193 105 0 chr9 65103606 65103661 -58972511 + B4 SINE B4 203 263 -29 3 1081 4116 171 40 38 chr9 65103661 65104502 -58971670 + RMER13B LTR ERVK 1 843 -65 3 1081 1471 58 0 77 chr9 65104624 65104831 -58971341 + B2_Mm1t SINE B2 2 192 -1 3 1081 478 222 37 0 chr9 65104881 65104989 -58971183 + PB1D7 SINE Alu 2 113 -7 3 1081 270 0 0 0 chr9 65105092 65105122 -58971050 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1081 549 0 0 0 chr9 65105122 65105182 -58970990 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1081 551 259 108 46 chr9 65105192 65105262 -58970910 - B4 SINE B4 -2 290 86 3 1081 653 188 16 49 chr9 65105262 65105385 -58970787 - PB1D9 SINE Alu -1 119 1 3 1081 1121 241 12 37 chr9 65105385 65105629 -58970543 - B4 SINE B4 -54 238 1 3 1081 308 94 19 0 chr9 65106822 65106875 -58969297 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1081 1020 290 54 4 chr9 65107038 65107315 -58968857 - B4 SINE B4 -1 291 1 3 1081 381 205 12 12 chr9 65108442 65108526 -58967646 - B3A SINE B2 -113 85 2 3 1081 216 0 0 0 chr9 65108807 65108831 -58967341 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1081 587 254 83 22 chr9 65108837 65109018 -58967154 - B3A SINE B2 -6 192 1 3 1081 777 186 210 0 chr9 65109051 65109218 -58966954 - B3 SINE B2 -14 202 1 3 1081 260 346 83 18 chr9 65109239 65109348 -58966824 - RMER12 LTR ERVK -474 848 733 3 1081 223 357 117 0 chr9 65109915 65110069 -58966103 - MIR3 SINE MIR -18 190 19 3 1081 840 222 93 11 chr9 65110181 65110363 -58965809 + ID_B1 SINE B4 2 198 -26 3 1081 1101 109 7 0 chr9 65110389 65110536 -58965636 + B1_Mus1 SINE Alu 1 148 0 3 1081 1151 63 14 0 chr9 65111150 65111293 -58964879 + B1_Mm SINE Alu 3 147 0 3 1081 650 259 43 19 chr9 65111377 65111538 -58964634 - B3 SINE B2 -13 203 39 3 1081 798 156 7 29 chr9 65111556 65111695 -58964477 - B1_Mur4 SINE Alu -9 141 6 3 1081 531 273 154 5 chr9 65111725 65111920 -58964252 - ID_B1 SINE B4 0 224 1 3 1081 396 0 0 0 chr9 65112085 65112129 -58964043 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1081 920 55 114 23 chr9 65112224 65112355 -58963817 + B1_Mus2 SINE Alu 5 147 0 3 1081 225 0 0 0 chr9 65112893 65112918 -58963254 + (CTG)n Simple_repeat Simple_repeat 2 26 0 3 1081 481 240 0 67 chr9 65113661 65113795 -58962377 - B1F SINE Alu -1 148 24 3 1081 816 210 32 130 chr9 65114549 65114795 -58961377 + ID_B1 SINE B4 3 224 0 3 1081 312 176 0 0 chr9 65115246 65115297 -58960875 - L4 LINE RTE -192 1837 1787 3 1081 965 190 101 10 chr9 65116141 65116348 -58959824 - URR1A DNA MER1_type 0 226 1 3 1081 586 178 0 63 chr9 65116742 65116868 -58959304 - PB1D9 SINE Alu 0 120 3 3 1081 245 256 0 23 chr9 65116872 65116960 -58959212 + CT-rich Low_complexity Low_complexity 4 89 0 3 1081 529 290 0 0 chr9 65116960 65117084 -58959088 - ID_B1 SINE B4 -14 210 87 3 1081 365 194 69 0 chr9 65118458 65118530 -58957642 - ID4_ SINE ID -4 79 3 3 1081 364 274 19 10 chr9 65118556 65118659 -58957513 - PB1D10 SINE Alu -11 106 3 3 1081 660 212 82 61 chr9 65118670 65118866 -58957306 - ID_B1 SINE B4 -23 201 2 3 1081 573 171 31 31 chr9 65118884 65119011 -58957161 - B1F2 SINE Alu -22 127 1 3 1081 714 102 144 0 chr9 65119062 65119180 -58956992 - B1_Mus1 SINE Alu -10 138 4 3 1081 231 114 0 0 chr9 65119251 65119286 -58956886 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 1081 449 138 90 60 chr9 65119286 65119386 -58956786 - B1_Mur4 SINE Alu 0 150 48 3 1081 385 287 76 15 chr9 65119401 65119532 -58956640 - B1F1 SINE Alu -1 148 10 3 1081 187 269 106 11 chr9 65119700 65119794 -58956378 - MIR SINE MIR -140 122 20 3 1081 467 321 18 30 chr9 65120270 65120437 -58955735 + ID_B1 SINE B4 3 167 -57 3 1081 776 146 61 8 chr9 65120975 65121106 -58955066 + B1_Mus1 SINE Alu 3 140 -8 3 1081 302 294 142 35 chr9 65121671 65121840 -58954332 + L2 LINE L2 2854 3040 -379 3 1081 1161 68 0 0 chr9 65122489 65122636 -58953536 + B1_Mus1 SINE Alu 2 148 0 3 1081 1169 54 42 6 chr9 65122661 65122829 -58953343 - B2_Mm2 SINE B2 -21 174 1 3 1081 201 365 0 37 chr9 65123191 65123299 -58952873 - MIR3 SINE MIR -42 166 63 3 1081 1206 48 7 0 chr9 65123299 65123445 -58952727 + B1_Mus2 SINE Alu 1 147 0 3 1081 387 0 0 0 chr9 65123967 65124010 -58952162 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1081 563 227 190 17 chr9 65124047 65124226 -58951946 + ID_B1 SINE B4 1 210 -14 3 1081 395 215 38 0 chr9 65124320 65124399 -58951773 + ID_B1 SINE B4 92 173 -51 3 1081 716 220 0 7 chr9 65124436 65124578 -58951594 - ID_B1 SINE B4 -2 222 82 3 1081 1133 163 31 79 chr9 65124593 65124820 -58951352 + B3 SINE B2 1 216 0 3 1081 318 261 15 0 chr9 65125109 65125174 -58950998 + ID4 SINE ID 7 72 -11 3 1081 270 0 0 0 chr9 65125207 65125237 -58950935 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1081 498 98 10 71 chr9 65125241 65125340 -58950832 - B2_Mm2 SINE B2 -101 94 2 3 1081 504 240 41 0 chr9 65125349 65125470 -58950702 + ID_B1 SINE B4 99 224 0 3 1081 235 167 30 0 chr9 65125477 65125543 -58950629 + GA-rich Low_complexity Low_complexity 2 69 0 3 1081 489 143 238 0 chr9 65128468 65128573 -58947599 - B1_Mur3 SINE Alu 0 149 20 3 1081 195 42 0 0 chr9 65128604 65128628 -58947544 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1081 599 211 49 68 chr9 65128645 65128808 -58947364 - B3A SINE B2 -38 160 1 3 1081 987 265 0 5 chr9 65128886 65129110 -58947062 - ID_B1 SINE B4 0 224 2 3 1081 423 276 29 43 chr9 65129786 65129926 -58946246 + ID_B1 SINE B4 86 223 -1 3 1081 354 204 56 11 chr9 65130494 65130583 -58945589 - ID_B1 SINE B4 -130 94 2 3 1081 813 253 132 0 chr9 65130585 65130858 -58945314 - L1M4 LINE L1 -1139 5007 4699 3 1081 949 163 7 0 chr9 65130980 65131127 -58945045 + B1_Mur4 SINE Alu 3 150 0 4 1081 1303 81 52 0 chr9 65131556 65131728 -58944444 + B2_Mm2 SINE B2 1 181 -14 4 1081 627 203 67 30 chr9 65131771 65131961 -58944211 + B3 SINE B2 1 187 -8 4 1081 753 250 115 0 chr9 65131970 65132170 -58944002 + ID_B1 SINE B4 2 224 0 4 1081 297 316 0 0 chr9 65132256 65132351 -58943821 - PB1D10 SINE Alu -5 112 18 4 1081 561 294 5 63 chr9 65132351 65132540 -58943632 - B3A SINE B2 -16 182 5 4 1081 5908 58 29 67 chr9 65132575 65133104 -58943068 + RLTR13C2 LTR ERVK 3 510 -298 4 1081 1436 84 21 0 chr9 65133104 65133294 -58942878 - B2_Mm2 SINE B2 -1 194 1 4 1081 5908 58 29 67 chr9 65133294 65133307 -58942865 + RLTR13C2 LTR ERVK 511 511 -297 4 1081 1259 20 0 20 chr9 65133307 65133457 -58942715 - B1_Mm SINE Alu 0 147 1 4 1081 5908 58 29 67 chr9 65133457 65133751 -58942421 + RLTR13C2 LTR ERVK 511 808 0 4 1081 247 386 0 0 chr9 65134063 65134164 -58942008 - B4A SINE B4 -33 259 159 4 1081 550 270 7 33 chr9 65134174 65134327 -58941845 - B1F SINE Alu 0 149 1 4 1081 397 232 0 20 chr9 65134451 65134552 -58941620 - B4A SINE B4 -11 281 183 4 1081 226 263 162 63 chr9 65134601 65134743 -58941429 + B4A SINE B4 81 236 -56 4 1081 192 77 0 0 chr9 65134776 65134802 -58941370 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1081 2426 125 30 2 chr9 65134887 65135289 -58940883 + MTC LTR MaLR 1 413 -8 4 1081 583 246 0 37 chr9 65135380 65135515 -58940657 - RSINE1 SINE B4 -35 130 1 4 1081 1036 82 0 70 chr9 65135620 65135777 -58940395 + B1_Mm SINE Alu 1 146 -1 4 1081 237 108 0 0 chr9 65135790 65135827 -58940345 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1081 456 19 0 0 chr9 65135829 65135882 -58940290 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 4 1081 322 259 16 97 chr9 65135897 65136021 -58940151 - RSINE1 SINE B4 -25 140 27 4 1081 3096 97 33 35 chr9 65136086 65136569 -58939603 + RLTR45 LTR ERVK 1 482 0 4 1081 434 298 39 62 chr9 65137251 65137430 -58938742 - B3 SINE B2 -37 179 5 4 1081 628 173 62 23 chr9 65137450 65137580 -58938592 - B1_Mur2 SINE Alu -7 142 8 4 1081 1141 76 0 0 chr9 65137760 65137904 -58938268 - B1_Mm SINE Alu 0 147 4 4 1081 730 206 28 7 chr9 65138253 65138395 -58937777 - B1_Mur1 SINE Alu 0 149 5 4 1081 513 258 45 0 chr9 65138400 65138462 -58937710 - ID_B1 SINE B4 -1 223 162 4 1081 1139 69 7 0 chr9 65138462 65138607 -58937565 - B1_Mus2 SINE Alu -1 146 1 4 1081 513 258 45 0 chr9 65138607 65138676 -58937496 - ID_B1 SINE B4 -63 161 87 4 1081 260 260 151 24 chr9 65138702 65138828 -58937344 - B3A SINE B2 -7 191 50 4 1081 471 283 35 0 chr9 65138922 65139035 -58937137 - RSINE1 SINE B4 -36 129 13 4 1081 380 306 16 0 chr9 65139342 65139466 -58936706 - B4 SINE B4 0 292 167 4 1081 271 220 17 0 chr9 65139566 65139625 -58936547 + MTE2b LTR MaLR 1 60 -319 4 1081 720 201 104 22 chr9 65140024 65140207 -58935965 + B3 SINE B2 7 204 -12 4 1081 847 196 0 7 chr9 65140210 65140359 -58935813 - B1_Mus1 SINE Alu 0 148 1 4 1081 662 222 188 0 chr9 65140393 65140569 -58935603 + B3 SINE B2 5 213 -3 4 1081 1267 20 7 0 chr9 65140588 65140735 -58935437 + B1_Mus1 SINE Alu 1 148 0 4 1081 504 167 10 0 chr9 65141360 65141456 -58934716 + B1_Mur4 SINE Alu 54 150 0 4 1081 205 195 0 24 chr9 65142057 65142099 -58934073 + GA-rich Low_complexity Low_complexity 1 41 0 4 1082 223 366 24 0 chr9 65143696 65143778 -58932394 + B3 SINE B2 2 85 -131 4 1082 207 0 0 0 chr9 65143826 65143849 -58932323 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1082 806 44 202 0 chr9 65143849 65143963 -58932209 - B1_Mus1 SINE Alu -11 137 1 4 1082 337 253 11 11 chr9 65144010 65144102 -58932070 + ID_B1 SINE B4 133 224 0 4 1082 216 306 148 34 chr9 65144101 65144189 -58931983 + B1F SINE Alu 1 98 -51 4 1082 191 36 36 0 chr9 65144228 65144256 -58931916 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1082 713 203 109 45 chr9 65144275 65144476 -58931696 + B3 SINE B2 3 216 0 4 1082 305 247 49 0 chr9 65144486 65144567 -58931605 - B1F SINE Alu -20 129 45 4 1082 266 309 145 20 chr9 65144494 65144591 -58931581 - ID_B1 SINE B4 -25 199 29 4 1082 266 222 0 18 chr9 65144591 65144646 -58931526 - ID4_ SINE ID -2 81 28 4 1082 286 248 57 81 chr9 65144662 65144785 -58931387 - PB1D7 SINE Alu 0 120 1 4 1082 1084 62 21 0 chr9 65144913 65145058 -58931114 - B1_Mus1 SINE Alu 0 148 1 4 1082 488 306 56 10 chr9 65145137 65145332 -58930840 + Charlie4a DNA MER1_type 1 204 -304 4 1082 295 305 66 9 chr9 65145791 65145897 -58930275 + RSINE1 SINE B4 52 163 -2 4 1082 193 140 0 34 chr9 65146122 65146160 -58930012 + T-rich Low_complexity Low_complexity 24 60 0 4 1082 1346 73 15 35 chr9 65146160 65146358 -58929814 - B2_Mm2 SINE B2 0 195 2 4 1082 193 140 0 34 chr9 65146358 65146378 -58929794 + T-rich Low_complexity Low_complexity 4 23 0 4 1082 395 242 74 8 chr9 65146382 65146503 -58929669 - B3 SINE B2 -3 213 85 4 1082 353 244 222 29 chr9 65146594 65146778 -58929394 - B3A SINE B2 -11 205 3 4 1082 347 242 65 24 chr9 65146781 65146904 -58929268 - ID_B1 SINE B4 -1 223 96 4 1082 359 214 44 77 chr9 65146928 65147019 -58929153 - B1F SINE Alu -51 98 11 4 1082 207 114 0 0 chr9 65147046 65147081 -58929091 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1082 263 197 121 0 chr9 65147085 65147170 -58929002 - PB1D10 SINE Alu 0 120 12 4 1082 36 23 0 0 chr9 65147188 65147231 -58928941 + AT_rich Low_complexity Low_complexity 1 43 0 4 1082 719 48 68 0 chr9 65147262 65147365 -58928807 + B1_Mus1 SINE Alu 39 148 0 4 1082 629 218 193 6 chr9 65147475 65147641 -58928531 - B3 SINE B2 -5 211 15 4 1082 369 229 221 0 chr9 65148020 65148142 -58928030 - B1_Mur3 SINE Alu 0 149 1 4 1082 1454 54 0 32 chr9 65148185 65148375 -58927797 - B2_Mm2 SINE B2 -10 185 2 4 1082 537 189 0 51 chr9 65148535 65148652 -58927520 + PB1D9 SINE Alu 10 120 0 4 1082 312 27 0 0 chr9 65148652 65148689 -58927483 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 4 1082 180 0 0 0 chr9 65148693 65148713 -58927459 + (TGGA)n Simple_repeat Simple_repeat 2 21 0 4 1082 393 152 15 0 chr9 65148718 65148784 -58927388 + B3 SINE B2 60 126 -90 4 1082 556 188 10 0 chr9 65148845 65148946 -58927226 + B1_Mur4 SINE Alu 1 102 -48 4 1082 260 311 16 0 chr9 65148954 65149015 -58927157 - PB1D7 SINE Alu -56 64 3 4 1082 901 177 14 0 chr9 65149065 65149212 -58926960 + B1_Mur4 SINE Alu 1 149 -1 4 1082 34 0 0 0 chr9 65149244 65149278 -58926894 + AT_rich Low_complexity Low_complexity 1 34 0 4 1082 979 123 129 0 chr9 65149394 65149557 -58926615 - B2_Mm2 SINE B2 -10 185 2 4 1082 2470 81 12 6 chr9 65150077 65150402 -58925770 - ORR1A2 LTR MaLR 0 327 1 4 1082 278 287 23 11 chr9 65150672 65150760 -58925412 + CT-rich Low_complexity Low_complexity 1 89 0 4 1082 269 212 139 12 chr9 65150765 65150851 -58925321 - PB1D10 SINE Alu -9 108 12 4 1082 677 197 43 21 chr9 65150903 65151043 -58925129 - B1_Mur2 SINE Alu -6 143 1 4 1082 325 233 27 0 chr9 65151439 65151512 -58924660 - MER58C DNA MER1_type 0 215 141 4 1082 363 190 24 12 chr9 65151534 65151619 -58924553 - MTEb LTR MaLR 0 379 294 4 1082 270 0 0 0 chr9 65151781 65151811 -58924361 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1082 396 0 0 0 chr9 65151811 65151854 -58924318 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1082 628 198 172 6 chr9 65152645 65152808 -58923364 - B3 SINE B2 -7 209 20 4 1082 455 275 69 64 chr9 65152811 65153013 -58923159 - B3A SINE B2 -9 207 5 4 1082 1128 96 0 0 chr9 65153096 65153242 -58922930 + B1_Mus1 SINE Alu 2 147 -1 4 1082 195 114 0 0 chr9 65153255 65153290 -58922882 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1082 1113 96 0 0 chr9 65153296 65153452 -58922720 + B2_Mm2 SINE B2 2 157 -38 4 1082 435 221 0 163 chr9 65153469 65153647 -58922525 + B2_Mm2 SINE B2 47 195 0 4 1082 431 239 322 16 chr9 65153648 65153897 -58922275 - Lx7 LINE L1 -334 7362 7038 4 1082 640 249 17 40 chr9 65153900 65154076 -58922096 + B3 SINE B2 38 209 -7 4 1082 2901 227 104 38 chr9 65154214 65155037 -58921135 - Lx8 LINE L1 -330 7143 6266 4 1082 310 383 6 19 chr9 65155083 65155240 -58920932 - B3 SINE B2 -34 182 28 4 1082 197 33 33 0 chr9 65155240 65155270 -58920902 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1082 1140 36 7 0 chr9 65155270 65155407 -58920765 - B1_Mus1 SINE Alu -9 139 2 4 1082 1384 91 21 0 chr9 65155580 65155767 -58920405 + B2_Mm2 SINE B2 1 191 -4 4 1082 406 269 125 8 chr9 65155890 65156010 -58920162 - RSINE1 SINE B4 -29 136 3 4 1082 359 308 58 29 chr9 65156042 65156179 -58919993 - ID_B1 SINE B4 -1 223 83 4 1082 311 314 67 0 chr9 65156486 65156591 -58919581 - ID_B1 SINE B4 -20 204 93 4 1082 29 0 0 0 chr9 65156622 65156651 -58919521 + AT_rich Low_complexity Low_complexity 1 29 0 4 1082 450 0 0 0 chr9 65157209 65157259 -58918913 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1082 459 243 19 0 chr9 65157267 65157370 -58918802 - PB1D10 SINE Alu -12 105 1 5 1082 819 198 56 44 chr9 65157641 65157821 -58918351 - B3A SINE B2 -16 182 1 5 1082 1314 79 21 21 chr9 65158379 65158572 -58917600 - B2_Mm1t SINE B2 0 193 1 5 1082 39 50 0 0 chr9 65159017 65159077 -58917095 + AT_rich Low_complexity Low_complexity 1 60 0 5 1082 213 65 0 0 chr9 65159572 65159603 -58916569 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 5 1082 565 121 0 10 chr9 65159620 65159720 -58916452 - B2_Mm2 SINE B2 0 195 97 5 1082 1233 61 0 0 chr9 65160131 65160278 -58915894 - B1_Mm SINE Alu 0 147 1 5 1082 1303 132 5 0 chr9 65160289 65160479 -58915693 - B2_Mm1t SINE B2 0 193 3 5 1082 308 186 0 140 chr9 65160495 65160595 -58915577 + MT2B LTR ERVL 155 240 -361 5 1082 712 175 0 49 chr9 65160516 65160660 -58915512 + B1_Mus2 SINE Alu 9 145 -2 5 1082 486 0 0 0 chr9 65160667 65160721 -58915451 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1082 686 276 26 0 chr9 65160723 65160879 -58915293 - B3A SINE B2 -38 160 1 5 1082 342 333 48 69 chr9 65160890 65161035 -58915137 + RSINE1 SINE B4 3 144 -21 5 1082 258 143 0 0 chr9 65161080 65161101 -58915071 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1082 1250 34 0 0 chr9 65161101 65161248 -58914924 - B1_Mm SINE Alu 0 147 1 5 1082 258 143 0 0 chr9 65161248 65161282 -58914890 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1082 1309 7 0 0 chr9 65161282 65161428 -58914744 - B1_Mm SINE Alu 0 147 2 5 1082 1135 63 7 0 chr9 65161433 65161576 -58914596 - B1_Mus2 SINE Alu -3 144 1 5 1082 230 241 284 25 chr9 65161645 65161726 -58914446 - PB1D10 SINE Alu -10 107 6 5 1082 857 161 191 0 chr9 65161805 65161973 -58914199 + B3 SINE B2 2 201 -15 5 1082 267 268 234 30 chr9 65162041 65162162 -58914010 + B1F1 SINE Alu 1 125 -2 5 1082 893 169 127 26 chr9 65163115 65163304 -58912868 + B3 SINE B2 1 208 -8 5 1082 254 164 18 0 chr9 65163737 65163792 -58912380 + CT-rich Low_complexity Low_complexity 2 57 0 5 1082 352 250 76 9 chr9 65163794 65163899 -58912273 - B1_Mur1 SINE Alu -20 129 18 5 1082 234 301 71 41 chr9 65163976 65164146 -58912026 - MIRc SINE MIR -25 243 69 5 1082 477 154 269 37 chr9 65164719 65164827 -58911345 + PB1D7 SINE Alu 16 148 -1 5 1082 916 123 31 0 chr9 65165746 65165908 -58910264 + URR1A DNA MER1_type 59 225 -1 5 1082 458 271 37 0 chr9 65165968 65166075 -58910097 + RSINE1 SINE B4 55 165 0 5 1082 387 0 0 0 chr9 65166690 65166733 -58909439 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1082 418 200 107 29 chr9 65166738 65166841 -58909331 - PB1D10 SINE Alu -6 111 1 5 1082 852 127 301 0 chr9 65166918 65167084 -58909088 + B3 SINE B2 1 216 0 5 1082 282 254 13 53 chr9 65167242 65167317 -58908855 + ID4_ SINE ID 10 81 -2 5 1082 183 80 0 0 chr9 65167346 65167371 -58908801 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 5 1082 1265 41 0 12 chr9 65167439 65167598 -58908574 + B2_Mm1a SINE B2 2 160 -33 5 1082 180 0 0 0 chr9 65167598 65167618 -58908554 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 1082 1265 41 0 12 chr9 65167618 65167629 -58908543 + B2_Mm1a SINE B2 161 170 -23 5 1082 344 225 42 0 chr9 65167632 65167703 -58908469 + ID_B1 SINE B4 146 219 -5 5 1082 1249 54 6 0 chr9 65168044 65168210 -58907962 + B2_Mm1a SINE B2 1 167 -26 5 1082 243 0 0 0 chr9 65168210 65168237 -58907935 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 5 1082 346 241 81 0 chr9 65168258 65168345 -58907827 + PB1D7 SINE Alu 1 94 -26 5 1082 387 219 219 0 chr9 65168975 65169089 -58907083 + B1_Mur2 SINE Alu 1 139 -10 5 1082 931 144 38 60 chr9 65169378 65169563 -58906609 - B2_Mm2 SINE B2 -14 181 1 5 1082 180 346 20 6 chr9 65170189 65170279 -58905893 + MIR SINE MIR 32 123 -145 5 1082 1512 72 0 0 chr9 65170812 65171005 -58905167 - B2_Mm1a SINE B2 0 193 1 5 1082 1175 37 0 0 chr9 65171463 65171599 -58904573 - B1_Mus2 SINE Alu -11 136 1 5 1082 700 173 24 0 chr9 65172295 65172422 -58903750 - B1_Mur4 SINE Alu -10 140 11 5 1082 526 279 157 0 chr9 65172427 65172624 -58903548 - B4A SINE B4 -57 235 8 5 1082 241 151 0 36 chr9 65172708 65172763 -58903409 + T-rich Low_complexity Low_complexity 2 54 0 5 1082 203 162 0 0 chr9 65172860 65172897 -58903275 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1082 210 338 90 8 chr9 65172901 65173035 -58903137 + B4A SINE B4 2 146 -146 5 1082 299 259 74 0 chr9 65173522 65173603 -58902569 + B1_Mus2 SINE Alu 1 87 -60 5 1082 1541 17 67 0 chr9 65174345 65174524 -58901648 + B2_Mm1t SINE B2 1 191 -2 5 1082 297 208 72 10 chr9 65175045 65175142 -58901030 - RLTR16 LTR ERVK -12 493 391 5 1082 308 209 33 44 chr9 65175265 65175355 -58900817 + RMER3D-int LTR ERVK 100 188 -2654 5 1082 1216 85 79 0 chr9 65175412 65175589 -58900583 + B2_Mm2 SINE B2 2 192 -3 5 1082 433 161 22 44 chr9 65175627 65175718 -58900454 + RMER3D-int LTR ERVK 1023 1111 -1731 5 1082 216 135 0 0 chr9 65175727 65175764 -58900408 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1082 966 95 73 0 chr9 65175764 65175901 -58900271 - B1_Mus2 SINE Alu 0 147 1 5 1082 1119 57 7 0 chr9 65175975 65176115 -58900057 - B1_Mus2 SINE Alu -6 141 1 5 1082 1108 214 56 40 chr9 65176174 65176496 -58899676 + RLTR16 LTR ERVK 6 332 -173 5 1082 1329 42 0 0 chr9 65176539 65176707 -58899465 + (TG)n Simple_repeat Simple_repeat 2 169 0 5 1082 285 231 128 0 chr9 65176850 65176928 -58899244 + ID_B1 SINE B4 132 219 -5 5 1082 235 264 250 11 chr9 65177097 65177185 -58898987 - ID_B1 SINE B4 -36 188 80 5 1082 519 299 134 0 chr9 65177249 65177436 -58898736 - MER58A DNA MER1_type -2 222 11 5 1082 1414 88 5 5 chr9 65178805 65178999 -58897173 - B2_Mm2 SINE B2 0 195 2 5 1082 633 191 0 16 chr9 65179404 65179532 -58896640 - B1_Mur2 SINE Alu -10 139 14 5 1082 1613 42 0 20 chr9 65180483 65180679 -58895493 - B2_Mm1a SINE B2 0 193 2 5 1082 588 223 12 86 chr9 65181058 65181084 -58895088 - B1_Mur4 SINE Alu 0 150 126 5 1082 1169 41 0 14 chr9 65181084 65181232 -58894940 + B1_Mm SINE Alu 2 147 0 5 1082 613 223 12 86 chr9 65181232 65181367 -58894805 - B1_Mm SINE Alu -13 134 1 5 1082 243 323 60 8 chr9 65181253 65181387 -58894785 - B4 SINE B4 -88 204 64 5 1082 404 307 65 24 chr9 65182399 65182512 -58893660 - MuRRS4-int LTR ERV1 -221 4842 4719 5 1082 594 0 0 0 chr9 65182512 65182578 -58893594 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1082 404 307 65 24 chr9 65182578 65182634 -58893538 - MuRRS4-int LTR ERV1 -345 4718 4666 5 1082 198 103 0 0 chr9 65182745 65182774 -58893398 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 5 1082 892 34 195 0 chr9 65182774 65182892 -58893280 - B1_Mus1 SINE Alu -6 142 2 5 1082 870 233 100 33 chr9 65183564 65183804 -58892368 - MuRRS4-int LTR ERV1 -1043 4020 3765 5 1082 5836 48 4 11 chr9 65185146 65185859 -58890313 - L1_Mus1 LINE L1 -1 6566 5859 5 1082 243 0 45 45 chr9 65185876 65185920 -58890252 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1082 1014 60 0 0 chr9 65185920 65186053 -58890119 - B1_Mm SINE Alu -10 137 5 5 1082 468 0 0 0 chr9 65186180 65186232 -58889940 + (A)n Simple_repeat Simple_repeat 1 52 0 5 1082 237 33 0 0 chr9 65186326 65186356 -58889816 + (TATG)n Simple_repeat Simple_repeat 1 30 0 5 1082 3835 138 51 18 chr9 65186380 65187065 -58889107 - RMER19B LTR ERVK -25 877 170 5 1082 454 269 0 141 chr9 65187242 65187324 -58888848 - RMER19B LTR ERVK -562 175 96 5 1082 4740 104 0 9 chr9 65187324 65187990 -58888182 + L1Md_F2 LINE L1 5910 6569 -13 5 1082 454 269 0 141 chr9 65187990 65188106 -58888066 - RMER19B LTR ERVK -642 95 5 5 1082 1410 225 87 134 chr9 65188121 65188744 -58887428 - RMER19C LTR ERVK -8 603 42 5 1082 5104 128 12 11 chr9 65188744 65189563 -58886609 + MYSERV6-int LTR ERVK 2239 3058 -5901 5 1082 1012 83 28 0 chr9 65190014 65190159 -58886013 + MYSERV6-int LTR ERVK 3059 3207 -5752 5 1082 1682 139 39 21 chr9 65190159 65190497 -58885675 - RMER6A LTR ERVK 0 756 413 5 1082 1382 113 14 5 chr9 65190491 65190714 -58885458 - RMER6A LTR ERVK -531 225 1 5 1082 574 94 0 96 chr9 65190714 65190808 -58885364 + MYSERV-int LTR ERVK 2977 3061 -3489 5 1082 1106 211 57 25 chr9 65190848 65191130 -58885042 - RMER19C LTR ERVK -320 291 1 5 1082 876 79 14 14 chr9 65191130 65191272 -58884900 + MYSERV6-int LTR ERVK 4853 4994 -3965 5 1082 234 229 180 0 chr9 65191272 65191333 -58884839 + B1_Mur4 SINE Alu 1 72 -78 5 1082 261 0 0 0 chr9 65191547 65191576 -58884596 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1082 457 233 49 16 chr9 65191661 65191783 -58884389 + L1MD1 LINE L1 6112 6237 -5 5 1082 637 97 0 19 chr9 65191844 65191949 -58884223 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 5 1082 653 167 0 0 chr9 65191972 65192086 -58884086 + B1_Mur4 SINE Alu 1 114 -36 5 1082 4203 46 2 18 chr9 65192110 65192621 -58883551 + RLTR1C LTR ERV1 1 503 0 5 1082 2375 58 241 149 chr9 65193159 65193628 -58882544 - RLTR1B LTR ERV1 0 512 1 5 1082 192 125 0 0 chr9 65194196 65194228 -58881944 + (CCG)n Simple_repeat Simple_repeat 3 34 0 5 1082 21 82 0 0 chr9 65194287 65194336 -58881836 + GC_rich Low_complexity Low_complexity 1 49 0 5 1082 206 274 149 43 chr9 65195553 65195694 -58880478 - MIRb SINE MIR -81 187 32 5 1082 945 222 15 10 chr9 65195809 65196014 -58880158 - B3 SINE B2 -6 210 5 5 1082 1105 206 197 20 chr9 65196052 65196443 -58879729 - Lx9 LINE L1 0 7644 7185 5 1082 2023 165 44 24 chr9 65197086 65197495 -58878677 - MTD LTR MaLR -2 417 1 5 1082 453 175 0 97 chr9 65197620 65197734 -58878438 + MT2B LTR ERVL 155 257 -344 5 1082 912 79 0 0 chr9 65197632 65197759 -58878413 + B1_Mus1 SINE Alu 2 128 -20 5 1082 564 210 8 16 chr9 65198228 65198349 -58877823 + PB1D7 SINE Alu 1 120 0 6 1082 4494 161 58 60 chr9 65198422 65199360 -58876812 - MYSERV6-int LTR ERVK -2 8957 8022 6 1082 491 147 33 61 chr9 65199368 65199549 -58876623 - RMER17C LTR ERVK -136 274 99 6 1082 899 183 48 30 chr9 65199553 65199784 -58876388 - MurERV4-int LTR ERVK -982 5568 5334 6 1082 351 239 143 0 chr9 65199784 65199900 -58876272 - RMER4A LTR ERVK -49 417 308 6 1082 1715 269 101 14 chr9 65199900 65200635 -58875537 - MurERV4-int LTR ERVK -84 5176 4244 6 1082 734 287 98 51 chr9 65201668 65202119 -58874053 - RLTR12B LTR ERVK -8 520 49 6 1082 318 50 0 0 chr9 65202740 65202780 -58873392 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1082 431 250 271 12 chr9 65202923 65203093 -58873079 + B4A SINE B4 1 215 -77 6 1082 486 237 51 34 chr9 65203105 65203223 -58872949 - B1F2 SINE Alu -1 148 29 6 1082 1197 50 0 0 chr9 65203271 65203412 -58872760 - B1_Mus2 SINE Alu -6 141 1 6 1082 1010 116 238 0 chr9 65203418 65203590 -58872582 - B3 SINE B2 0 216 4 6 1082 256 250 55 14 chr9 65203592 65203665 -58872507 + B4A SINE B4 200 275 -17 6 1082 218 178 30 61 chr9 65204172 65204238 -58871934 + GA-rich Low_complexity Low_complexity 3 66 0 6 1082 405 251 46 4 chr9 65204802 65204909 -58871263 - B1_Mus2 SINE Alu -37 112 3 6 1082 247 270 83 73 chr9 65204909 65204946 -58871226 - B4A SINE B4 -201 91 54 6 1082 263 280 23 47 chr9 65205334 65205420 -58870752 + MER82 DNA MER2_type 22 105 -548 6 1082 476 271 57 34 chr9 65205465 65205496 -58870676 - B3A SINE B2 -4 194 167 6 1082 201 39 0 0 chr9 65205496 65205522 -58870650 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1082 620 224 42 7 chr9 65205522 65205666 -58870506 - B3 SINE B2 -53 163 15 6 1082 672 276 115 28 chr9 65205658 65205979 -58870193 + MER82 DNA MER2_type 108 456 -197 6 1082 341 226 137 0 chr9 65206084 65206186 -58869986 + PB1D10 SINE Alu 1 116 -1 6 1082 22 35 0 0 chr9 65207297 65207326 -58868846 + AT_rich Low_complexity Low_complexity 1 29 0 6 1082 977 211 10 5 chr9 65208381 65208576 -58867596 - B3 SINE B2 -6 210 15 6 1082 651 260 130 0 chr9 65209756 65209925 -58866247 + ID_B1 SINE B4 2 192 -32 6 1082 335 216 13 26 chr9 65212235 65212311 -58863861 - ID4_ SINE ID -7 76 2 6 1082 530 256 32 0 chr9 65212327 65212452 -58863720 - B1F1 SINE Alu -10 139 11 6 1082 834 168 48 20 chr9 65212552 65212698 -58863474 - B1_Mur4 SINE Alu 0 150 1 6 1082 24 32 0 0 chr9 65214155 65214186 -58861986 + AT_rich Low_complexity Low_complexity 1 31 0 6 1082 759 184 131 0 chr9 65214374 65214542 -58861630 + B3 SINE B2 6 195 -21 6 1082 252 304 72 22 chr9 65214742 65214880 -58861292 - L1M5 LINE L1 -1192 4954 4810 6 1082 513 128 74 56 chr9 65214972 65215080 -58861092 - B1F2 SINE Alu 0 149 40 6 1082 377 54 18 0 chr9 65215097 65215153 -58861019 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 6 1082 493 277 57 13 chr9 65215196 65215389 -58860783 + B3A SINE B2 1 195 -21 6 1082 334 239 26 52 chr9 65215398 65215513 -58860659 - L1M5 LINE L1 -1456 4690 4579 6 1082 633 92 0 10 chr9 65215672 65215763 -58860409 - B2_Mm1a SINE B2 -6 187 97 6 1082 1473 70 5 0 chr9 65215763 65215949 -58860223 - B2_Mm1a SINE B2 -6 187 1 6 1082 718 192 7 20 chr9 65216002 65216151 -58860021 - B1_Mm SINE Alu 0 147 1 6 1082 551 293 82 25 chr9 65216175 65216542 -58859630 - L1M5 LINE L1 -1785 4361 3974 6 1082 284 236 0 68 chr9 65216599 65216658 -58859514 - RSINE1 SINE B4 -2 163 109 6 1082 441 313 7 13 chr9 65216663 65216812 -58859360 - Charlie12 DNA MER1_type -2725 148 1 6 1082 3414 11 0 0 chr9 65217481 65217860 -58858312 - L1Md_A LINE L1 0 6582 6204 6 1082 581 157 174 0 chr9 65217860 65217975 -58858197 + B1_Mur3 SINE Alu 3 137 -12 6 1082 378 255 45 18 chr9 65218319 65218431 -58857741 + PB1D10 SINE Alu 3 117 0 6 1082 262 0 0 50 chr9 65218523 65218563 -58857609 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 1082 765 292 14 0 chr9 65218565 65218784 -58857388 - ID_B1 SINE B4 -2 222 1 6 1082 297 0 0 0 chr9 65218860 65218893 -58857279 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1082 924 151 192 16 chr9 65218893 65219067 -58857105 - B3 SINE B2 -7 209 4 6 1082 267 215 0 0 chr9 65219542 65219607 -58856565 + GA-rich Low_complexity Low_complexity 2 66 0 6 1082 197 33 33 0 chr9 65220045 65220075 -58856097 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1082 1159 50 0 0 chr9 65220077 65220218 -58855954 - B1_Mus2 SINE Alu -6 141 1 6 1082 212 377 41 8 chr9 65220361 65220484 -58855688 + L2b LINE L2 3240 3366 -9 6 1082 1992 54 0 0 chr9 65220551 65220791 -58855381 - L1Md_F2 LINE L1 -540 6042 5803 6 1082 277 239 30 89 chr9 65220891 65220992 -58855180 - B1F2 SINE Alu -9 140 46 6 1082 743 249 84 31 chr9 65220909 65221100 -58855072 - ID_B1 SINE B4 -21 203 3 6 1082 454 264 9 9 chr9 65221129 65221236 -58854936 - PB1 SINE Alu -20 107 1 6 1082 336 218 13 0 chr9 65221878 65221956 -58854216 - ID4 SINE ID -3 80 2 6 1082 312 253 26 13 chr9 65223277 65223353 -58852819 - ID_B1 SINE B4 -3 221 145 6 1082 369 0 0 0 chr9 65223357 65223398 -58852774 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1082 685 293 96 33 chr9 65223408 65223680 -58852492 - B4A SINE B4 -1 291 3 6 1082 1621 26 0 0 chr9 65223705 65223897 -58852275 - B2_Mm1a SINE B2 0 193 2 6 1082 412 203 219 8 chr9 65223897 65224016 -58852156 - ID_B1 SINE B4 -68 156 13 6 1082 253 244 54 32 chr9 65224044 65224137 -58852035 - B1F1 SINE Alu -2 147 53 6 1082 359 205 16 104 chr9 65225805 65225819 -58850353 + MT2B LTR ERVL 151 153 -448 6 1082 884 151 0 0 chr9 65225819 65225965 -58850207 + B1_Mus2 SINE Alu 2 147 0 6 1082 23 0 0 0 chr9 65225969 65225992 -58850180 + AT_rich Low_complexity Low_complexity 1 23 0 6 1082 551 198 167 0 chr9 65226011 65226137 -58850035 + B1_Mus2 SINE Alu 1 147 0 6 1082 316 250 66 115 chr9 65227115 65227237 -58848935 - Lx8 LINE L1 -208 7265 7150 6 1082 380 246 26 0 chr9 65227281 65227401 -58848771 + MIR SINE MIR 30 161 -115 6 1082 1226 112 16 0 chr9 65227835 65228022 -58848150 + B2_Mm2 SINE B2 1 190 -5 6 1082 415 318 44 15 chr9 65228548 65228752 -58847420 - MLT1D LTR MaLR -295 210 1 6 1082 753 246 56 10 chr9 65229691 65229888 -58846284 + ID_B1 SINE B4 3 208 -16 6 1082 203 163 47 0 chr9 65229890 65229933 -58846239 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 6 1082 198 87 21 42 chr9 65230153 65230201 -58845971 + (TGGGGG)n Simple_repeat Simple_repeat 1 47 0 6 1082 779 31 10 0 chr9 65231026 65231124 -58845048 + (CA)n Simple_repeat Simple_repeat 2 100 0 6 1082 288 0 0 0 chr9 65231124 65231155 -58845017 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1082 197 349 54 8 chr9 65231653 65231783 -58844389 - MIR SINE MIR -87 175 40 6 1082 289 211 69 14 chr9 65232934 65233006 -58843166 + PB1 SINE Alu 43 118 -9 6 1082 519 219 16 32 chr9 65233029 65233152 -58843020 + ID_B1 SINE B4 104 224 0 6 1082 1229 185 0 5 chr9 65233224 65233436 -58842736 + B3 SINE B2 6 216 0 6 1082 789 64 16 8 chr9 65233458 65233584 -58842588 + (CA)n Simple_repeat Simple_repeat 1 127 0 6 1082 465 276 0 16 chr9 65233588 65233717 -58842455 + B1_Mur1 SINE Alu 22 148 -1 6 1082 392 312 35 21 chr9 65233818 65233959 -58842213 - B4 SINE B4 -67 225 83 6 1082 250 217 0 115 chr9 65233966 65233982 -58842190 - PB1D10 SINE Alu 0 117 49 6 1082 358 194 0 0 chr9 65233982 65234044 -58842128 - ID_B1 SINE B4 -33 191 130 6 1082 383 320 25 68 chr9 65234721 65234821 -58841351 - L2a LINE L2 -3 3423 3322 6 1082 346 250 0 0 chr9 65234821 65234893 -58841279 + ID4_ SINE ID 1 72 -11 6 1082 383 320 25 68 chr9 65234893 65235027 -58841145 - L2a LINE L2 -105 3321 3199 6 1082 1929 140 75 28 chr9 65235089 65235450 -58840722 - ORR1C1 LTR MaLR 0 378 1 6 1082 815 296 38 35 chr9 65235522 65235812 -58840360 - B4 SINE B4 -1 291 1 6 1082 405 0 0 0 chr9 65235832 65235877 -58840295 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1082 235 265 22 67 chr9 65235877 65235955 -58840217 - BC1_Mm scRNA scRNA -72 80 6 6 1082 450 208 233 0 chr9 65235975 65236095 -58840077 - B1_Mur2 SINE Alu -1 148 1 6 1082 258 292 86 34 chr9 65239700 65239817 -58836355 + RSINE1 SINE B4 1 123 -42 6 1082 189 289 0 0 chr9 65239979 65240031 -58836141 + MIR SINE MIR 111 162 -100 6 1082 391 340 21 36 chr9 65240258 65240450 -58835722 - B3 SINE B2 -27 189 1 6 1082 273 294 23 12 chr9 65240717 65240803 -58835369 - ID_B1 SINE B4 -3 221 135 6 1082 234 345 143 0 chr9 65240876 65240995 -58835177 - MIR SINE MIR -87 175 40 6 1082 39 60 0 12 chr9 65242604 65242648 -58833524 + AT_rich Low_complexity Low_complexity 1 44 0 6 1082 1372 75 16 0 chr9 65242648 65242836 -58833336 + B2_Mm2 SINE B2 3 193 -2 6 1082 39 60 0 12 chr9 65242836 65242876 -58833296 + AT_rich Low_complexity Low_complexity 1 40 0 6 1082 23 78 0 0 chr9 65242903 65242954 -58833218 + AT_rich Low_complexity Low_complexity 1 51 0 6 1082 1314 54 37 21 chr9 65242960 65243150 -58833022 - B2_Mm2 SINE B2 -1 194 2 6 1082 914 214 59 15 chr9 65243152 65243356 -58832816 - B3 SINE B2 0 216 4 6 1082 190 364 68 0 chr9 65243627 65243715 -58832457 + MIR3 SINE MIR 98 191 -17 6 1082 571 280 0 49 chr9 65244045 65244229 -58831943 - ID_B1 SINE B4 -2 222 48 6 1082 1937 146 71 6 chr9 65244764 65245115 -58831057 + RLTR14 LTR ERV1 6 379 -3 6 1082 332 43 22 0 chr9 65245348 65245394 -58830778 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 6 1082 270 200 0 0 chr9 65245825 65245880 -58830292 - RMER15 LTR ERVL -105 470 416 7 1082 454 194 113 68 chr9 65245878 65246011 -58830161 - B1F SINE Alu 0 149 11 7 1082 817 271 28 14 chr9 65247424 65247641 -58828531 - ID_B1 SINE B4 0 224 5 7 1082 1216 112 142 0 chr9 65248044 65248241 -58827931 - URR1B DNA MER1_type 0 225 1 7 1082 459 0 0 0 chr9 65248295 65248346 -58827826 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 7 1082 1052 230 0 0 chr9 65249177 65249390 -58826782 - B3 SINE B2 -1 215 3 7 1082 562 323 50 0 chr9 65249402 65249603 -58826569 + MIRb SINE MIR 43 253 -15 7 1082 697 239 0 126 chr9 65250044 65250298 -58825874 - ID_B1 SINE B4 -2 222 1 7 1082 1037 121 0 0 chr9 65250844 65250993 -58825179 + B1_Mur4 SINE Alu 1 149 -1 7 1082 183 292 41 14 chr9 65251004 65251077 -58825095 - MIRc SINE MIR -110 158 84 7 1082 186 128 179 0 chr9 65251167 65251206 -58824966 + MIRm SINE MIR 117 162 -114 7 1082 305 226 0 61 chr9 65251747 65251813 -58824359 - ID4_ SINE ID -21 62 1 7 1082 462 218 30 0 chr9 65251827 65251928 -58824244 - B1F SINE Alu -8 141 38 7 1082 673 262 51 23 chr9 65252584 65252799 -58823373 + L1MC4a LINE L1 7654 7874 -8 7 1082 877 227 69 5 chr9 65252805 65253022 -58823150 + B4A SINE B4 1 231 -61 7 1082 685 246 106 0 chr9 65253026 65253205 -58822967 + B3A SINE B2 1 198 0 7 1082 1219 91 11 17 chr9 65253235 65253414 -58822758 + B2_Mm1t SINE B2 2 179 -14 7 1082 354 105 316 9 chr9 65253480 65253594 -58822578 + B2_Mm2 SINE B2 47 195 0 7 1082 266 227 13 51 chr9 65253589 65253649 -58822523 + B4A SINE B4 217 274 -18 7 1082 351 121 0 0 chr9 65253649 65253707 -58822465 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1082 266 227 13 51 chr9 65253707 65253725 -58822447 + B4A SINE B4 275 292 0 7 1082 650 165 110 0 chr9 65253950 65254077 -58822095 + B1_Mus1 SINE Alu 2 142 -6 7 1082 242 224 0 20 chr9 65254078 65254128 -58822044 + GA-rich Low_complexity Low_complexity 4 52 0 7 1082 1144 95 0 22 chr9 65254128 65254311 -58821861 + (GAA)n Simple_repeat Simple_repeat 1 179 0 7 1082 309 135 0 19 chr9 65254447 65254500 -58821672 - HAL1-3A_ME LINE L1 -831 2027 1976 7 1082 209 117 0 62 chr9 65254532 65254596 -58821576 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1082 238 281 31 82 chr9 65254598 65254695 -58821477 - B3 SINE B2 -13 203 112 7 1082 660 309 103 19 chr9 65254647 65254908 -58821264 - B4A SINE B4 -2 290 8 7 1082 202 302 68 24 chr9 65255533 65255652 -58820520 + MIRm SINE MIR 42 171 -97 7 1082 230 293 23 68 chr9 65256792 65256880 -58819292 + MER102b DNA MER1_type 1 84 -257 7 1082 197 22 42 62 chr9 65257169 65257217 -58818955 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 7 1082 243 0 0 0 chr9 65257433 65257460 -58818712 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 1082 243 0 0 0 chr9 65257460 65257486 -58818686 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1082 384 22 0 0 chr9 65257486 65257530 -58818642 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1082 268 305 66 37 chr9 65258353 65258489 -58817683 - MIRb SINE MIR -19 249 110 7 1082 768 181 20 20 chr9 65260241 65260388 -58815784 - B1_Mur2 SINE Alu -1 148 2 7 1082 306 73 0 0 chr9 65262161 65262202 -58813970 + (GGA)n Simple_repeat Simple_repeat 3 43 0 7 1082 601 90 0 0 chr9 65262581 65262670 -58813502 - B1_Mur4 SINE Alu -60 90 2 7 1082 358 228 39 102 chr9 65262670 65262711 -58813461 - MT2B LTR ERVL -446 155 123 7 1082 514 218 44 22 chr9 65262715 65262851 -58813321 + L2a LINE L2 3270 3408 -18 7 1082 1201 271 150 73 chr9 65263263 65263835 -58812337 + RLTR22_Mur LTR ERVK 1 612 -1236 7 1082 396 0 0 0 chr9 65263835 65263879 -58812293 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1082 1201 271 150 73 chr9 65263879 65263947 -58812225 + RLTR22_Mur LTR ERVK 613 690 -1158 7 1082 256 219 31 0 chr9 65263938 65264002 -58812170 + RLTR22_Mus LTR ERVK 1419 1484 -324 7 1082 884 66 0 0 chr9 65264087 65264209 -58811963 + B1_Mus2 SINE Alu 2 123 -24 7 1082 298 212 99 108 chr9 65264181 65264292 -58811880 + RMER12 LTR ERVK 1213 1322 0 7 1082 325 273 50 20 chr9 65264329 65264430 -58811742 + B1F SINE Alu 35 138 -11 7 1082 620 301 89 8 chr9 65264452 65264710 -58811462 + RMER5 LTR ERV1 4 282 -252 7 1082 372 152 0 0 chr9 65264771 65264837 -58811335 + (CTA)n Simple_repeat Simple_repeat 1 66 0 7 1082 541 151 0 36 chr9 65264845 65264955 -58811217 + B1_Mur2 SINE Alu 42 147 -2 7 1082 353 211 14 0 chr9 65264962 65265033 -58811139 + RMER5 LTR ERV1 394 465 -69 7 1082 555 85 0 0 chr9 65265080 65265162 -58811010 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 7 1082 1223 34 0 0 chr9 65265258 65265405 -58810767 + B1_Mus2 SINE Alu 1 147 0 7 1082 243 0 0 0 chr9 65265415 65265442 -58810730 + (TA)n Simple_repeat Simple_repeat 1 27 0 7 1082 189 0 0 0 chr9 65265442 65265463 -58810709 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1082 212 154 0 0 chr9 65265537 65265576 -58810596 + C-rich Low_complexity Low_complexity 6 44 0 7 1082 281 289 35 166 chr9 65266030 65266154 -58810018 - MER33 DNA MER1_type -78 246 144 7 1082 1168 89 53 0 chr9 65266154 65266323 -58809849 - B2_Mm1a SINE B2 -14 179 2 7 1082 439 304 0 55 chr9 65266323 65266469 -58809703 - MER33 DNA MER1_type -181 143 6 7 1082 264 196 0 0 chr9 65266564 65266610 -58809562 + RMER30 DNA MER1_type 151 196 -6 7 1082 568 327 0 26 chr9 65266667 65266821 -58809351 + RSINE1 SINE B4 3 152 -13 7 1082 451 262 126 95 chr9 65267348 65267396 -58808776 + B3A SINE B2 3 44 -154 7 1082 1004 124 222 0 chr9 65267396 65267581 -58808591 + URR1A DNA MER1_type 1 226 0 7 1082 451 262 126 95 chr9 65267581 65267722 -58808450 + B3A SINE B2 45 198 0 7 1082 333 82 0 0 chr9 65268094 65268143 -58808029 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1082 230 283 17 0 chr9 65268143 65268203 -58807969 - ID4 SINE ID -11 72 12 7 1082 1103 193 9 14 chr9 65268223 65268438 -58807734 - B3 SINE B2 -1 215 2 7 1082 232 254 0 29 chr9 65268577 65268646 -58807526 + ID4 SINE ID 4 70 -13 7 1082 225 391 0 0 chr9 65268677 65268787 -58807385 + GA-rich Low_complexity Low_complexity 1 110 0 7 1082 1073 87 19 124 chr9 65269177 65269309 -58806863 - B2_Mm2 SINE B2 -7 188 69 7 1082 3938 7 0 0 chr9 65269309 65269761 -58806411 + L1Md_A LINE L1 6131 6582 0 7 1082 1073 87 19 124 chr9 65269761 65269838 -58806334 - B2_Mm2 SINE B2 -127 68 1 7 1082 321 26 0 0 chr9 65269888 65269926 -58806246 + (GA)n Simple_repeat Simple_repeat 2 39 0 7 1082 270 0 0 0 chr9 65270024 65270054 -58806118 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 7 1082 995 211 14 32 chr9 65270069 65270289 -58805883 + B3 SINE B2 1 216 0 7 1082 21 36 0 0 chr9 65270355 65270383 -58805789 + AT_rich Low_complexity Low_complexity 1 28 0 7 1082 271 330 43 43 chr9 65271384 65271501 -58804671 + RSINE1 SINE B4 49 165 0 7 1082 611 276 14 0 chr9 65271525 65271670 -58804502 + RSINE1 SINE B4 3 149 -16 7 1082 306 0 0 0 chr9 65271670 65271704 -58804468 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1082 216 0 0 0 chr9 65271704 65271727 -58804445 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1082 189 0 0 0 chr9 65271727 65271747 -58804425 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1082 23 0 0 0 chr9 65271747 65271770 -58804402 + AT_rich Low_complexity Low_complexity 1 23 0 7 1082 872 124 14 0 chr9 65271836 65271981 -58804191 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 7 1082 340 320 126 33 chr9 65272336 65272669 -58803503 - MLT1K LTR MaLR -62 533 170 7 1082 573 228 24 0 chr9 65273084 65273207 -58802965 - ID_B1 SINE B4 0 224 99 7 1082 402 208 0 0 chr9 65273208 65273280 -58802892 - PB1D9 SINE Alu -9 111 40 7 1082 252 0 0 0 chr9 65273293 65273321 -58802851 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1082 1157 107 6 0 chr9 65273339 65273508 -58802664 + B2_Mm1t SINE B2 2 171 -22 7 1082 274 177 0 39 chr9 65273559 65273626 -58802546 + B2_Mm2 SINE B2 47 109 -107 7 1082 198 0 0 0 chr9 65273640 65273662 -58802510 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 7 135 776 190 135 5 chr9 65273683 65273868 -58802304 - B3 SINE B2 -5 211 3 7 1083 549 352 19 0 chr9 65273942 65274104 -58802068 - RSINE1 SINE B4 0 165 1 7 1083 552 243 95 7 chr9 65274275 65274412 -58801760 + B1F1 SINE Alu 1 149 0 7 1083 422 302 35 114 chr9 65274434 65274662 -58801510 + ID_B1 SINE B4 2 211 -13 7 1083 513 250 0 6 chr9 65274664 65274780 -58801392 + B1_Mur3 SINE Alu 10 120 -27 7 1083 1100 65 0 0 chr9 65275014 65275153 -58801019 + B1_Mm SINE Alu 1 139 -8 7 1083 306 304 0 0 chr9 65275649 65275728 -58800444 + ID_B1 SINE B4 75 153 -71 7 1083 408 40 0 0 chr9 65275812 65275862 -58800310 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1083 402 39 0 0 chr9 65275862 65275913 -58800259 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1083 725 261 138 63 chr9 65275957 65276211 -58799961 + B4 SINE B4 6 278 -14 7 1083 209 200 0 0 chr9 65276235 65276249 -58799923 + A-rich Low_complexity Low_complexity 1 14 0 7 1083 1216 27 0 0 chr9 65276249 65276396 -58799776 + B1_Mus2 SINE Alu 1 147 0 7 1083 209 200 0 0 chr9 65276396 65276421 -58799751 + A-rich Low_complexity Low_complexity 15 39 0 7 1083 768 105 231 19 chr9 65276463 65276578 -58799594 - B2_Mm2 SINE B2 -5 190 41 7 1083 522 0 0 0 chr9 65276578 65276636 -58799536 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1083 1025 83 0 0 chr9 65276636 65276768 -58799404 - B1_Mus1 SINE Alu -16 132 1 7 1083 768 105 231 19 chr9 65276768 65276807 -58799365 - B2_Mm2 SINE B2 -155 40 3 7 1083 243 250 18 0 chr9 65277321 65277377 -58798795 + L1MD LINE L1 5524 5580 -2415 7 1083 773 187 169 6 chr9 65277480 65277663 -58798509 - B3 SINE B2 -2 214 2 8 1083 399 250 220 17 chr9 65277803 65277921 -58798251 - RSINE1 SINE B4 -22 143 2 8 1083 263 239 30 0 chr9 65277956 65278023 -58798149 + RMER30 DNA MER1_type 133 201 -1 7 1083 374 239 22 0 chr9 65278025 65278117 -58798055 + L1M4 LINE L1 5625 5718 -466 8 1083 685 238 0 39 chr9 65278289 65278442 -58797730 - B1F SINE Alu -2 147 1 8 1083 243 61 0 0 chr9 65278669 65278702 -58797470 + (GGGTG)n Simple_repeat Simple_repeat 1 33 0 8 1083 773 279 94 28 chr9 65278711 65278965 -58797207 - B4 SINE B4 -20 272 2 8 1083 885 176 181 0 chr9 65278987 65279169 -58797003 + B3 SINE B2 2 216 0 8 1083 216 358 71 45 chr9 65279265 65279310 -58796862 - B4A SINE B4 -46 246 114 8 1083 478 206 10 58 chr9 65279310 65279413 -58796759 - PB1D10 SINE Alu -8 109 12 8 1083 321 328 73 63 chr9 65279483 65279523 -58796649 - ID_B1 SINE B4 -49 243 150 8 1083 501 255 9 43 chr9 65279523 65279638 -58796534 - B1_Mur1 SINE Alu -38 111 1 8 1083 321 328 73 63 chr9 65279638 65279682 -58796490 - ID_B1 SINE B4 -49 149 41 8 1083 431 246 16 25 chr9 65279709 65279830 -58796342 - PB1D7 SINE Alu 0 120 1 8 1083 24 53 0 0 chr9 65280067 65280105 -58796067 + AT_rich Low_complexity Low_complexity 1 38 0 8 1083 298 341 89 0 chr9 65280778 65280901 -58795271 - RMER15 LTR ERVL -16 559 426 8 1083 267 307 92 30 chr9 65280937 65281068 -58795104 - Lx8 LINE L1 -256 7217 7079 8 1083 741 207 21 0 chr9 65281261 65281406 -58794766 + B1_Mus1 SINE Alu 1 148 0 8 1083 246 156 0 0 chr9 65281463 65281508 -58794664 + CT-rich Low_complexity Low_complexity 2 46 0 8 1083 1216 84 6 6 chr9 65281512 65281692 -58794480 + (TCC)n Simple_repeat Simple_repeat 1 180 0 8 1083 787 173 83 41 chr9 65281972 65282141 -58794031 - B3 SINE B2 -40 176 1 8 1083 644 202 184 0 chr9 65282152 65282315 -58793857 - B3A SINE B2 -5 193 1 8 1083 742 170 246 0 chr9 65283158 65283329 -58792843 + B3 SINE B2 4 216 0 8 1083 557 238 27 20 chr9 65284353 65284503 -58791669 - B3A SINE B2 -5 193 43 8 1083 34 42 0 0 chr9 65284590 65284638 -58791534 + AT_rich Low_complexity Low_complexity 1 48 0 8 1083 677 211 0 64 chr9 65285113 65285270 -58790902 - B1_Mur2 SINE Alu 0 149 3 8 1083 264 273 307 15 chr9 65285335 65285599 -58790573 + L2 LINE L2 2278 2618 -801 8 1083 657 152 45 0 chr9 65285760 65285793 -58790379 + B1_Mur4 SINE Alu 22 58 -92 8 1083 272 27 0 26 chr9 65285793 65285831 -58790341 + (CAG)n Simple_repeat Simple_repeat 3 39 0 8 1083 657 152 45 0 chr9 65285831 65285909 -58790263 + B1_Mur4 SINE Alu 59 137 -13 8 1083 431 130 101 0 chr9 65285916 65285985 -58790187 - B2_Mm2 SINE B2 -119 76 1 8 1083 810 174 95 144 chr9 65286351 65286398 -58789774 - B3 SINE B2 -5 211 178 8 1083 237 65 0 0 chr9 65286398 65286429 -58789743 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1083 1673 31 0 0 chr9 65286431 65286623 -58789549 - B2_Mm1a SINE B2 0 193 2 8 1083 1411 65 43 0 chr9 65286624 65286810 -58789362 - B2_Mm2 SINE B2 0 195 2 8 1083 810 174 95 144 chr9 65286810 65286979 -58789193 - B3 SINE B2 -39 177 1 8 1083 508 230 35 9 chr9 65287138 65287252 -58788920 - PB1D7 SINE Alu -3 117 1 8 1083 657 22 33 0 chr9 65287719 65287810 -58788362 + (TG)n Simple_repeat Simple_repeat 2 95 0 8 1083 594 257 22 7 chr9 65287818 65287955 -58788217 - B1F2 SINE Alu 0 149 11 8 1083 371 273 92 86 chr9 65287826 65287978 -58788194 - B4 SINE B4 -74 218 66 8 1083 233 293 82 139 chr9 65287856 65288050 -58788122 - MT2B2 LTR ERVL -321 263 81 8 1083 625 205 25 0 chr9 65288363 65288485 -58787687 + RSINE1 SINE B4 4 128 -37 8 1083 264 247 48 24 chr9 65288553 65288636 -58787536 + MT2B2 LTR ERVL 161 245 -339 8 1083 358 229 57 0 chr9 65288578 65288648 -58787524 + PB1D10 SINE Alu 30 103 -14 8 1083 279 0 0 0 chr9 65289373 65289404 -58786768 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1083 847 245 78 0 chr9 65289764 65289956 -58786216 + B3 SINE B2 6 212 -4 8 1083 350 225 99 0 chr9 65290178 65290249 -58785923 - B3 SINE B2 -79 137 60 8 1083 356 237 32 21 chr9 65290450 65290545 -58785627 + PB1D10 SINE Alu 22 117 0 8 1083 340 231 54 157 chr9 65290566 65290751 -58785421 - L1MC LINE L1 -2450 5432 5267 8 1083 2067 172 39 58 chr9 65290867 65291079 -58785093 - RLTR11A LTR ERVK -51 526 289 8 1083 186 43 0 0 chr9 65291079 65291102 -58785070 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1083 2067 195 58 60 chr9 65291102 65291377 -58784795 - RLTR11A LTR ERVK -272 305 1 8 1083 328 333 0 0 chr9 65291395 65291482 -58784690 - RSINE1 SINE B4 -76 89 3 8 1083 373 206 27 0 chr9 65292080 65292153 -58784019 - B3A SINE B2 -123 75 1 8 1083 562 231 35 7 chr9 65292155 65292299 -58783873 - B1F SINE Alu -1 148 1 8 1083 838 101 29 0 chr9 65292312 65292450 -58783722 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 8 1083 320 326 38 59 chr9 65292841 65293027 -58783145 - B3A SINE B2 -16 182 1 8 1083 925 206 71 20 chr9 65293052 65293250 -58782922 - B3 SINE B2 -7 209 2 8 1083 638 147 8 79 chr9 65293281 65293407 -58782765 + PB1D9 SINE Alu 2 118 -2 8 1083 360 77 0 0 chr9 65293545 65293597 -58782575 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1083 387 238 48 0 chr9 65293903 65294008 -58782164 - PB1D7 SINE Alu -7 113 4 8 1083 550 155 53 7 chr9 65294136 65294257 -58781915 - B1_Mur1 SINE Alu 0 150 27 8 1083 470 325 0 0 chr9 65294319 65294442 -58781730 - RSINE1 SINE B4 -42 123 1 8 1083 203 246 0 0 chr9 65295232 65295275 -58780897 + T-rich Low_complexity Low_complexity 15 57 0 8 1083 1155 48 7 27 chr9 65295275 65295425 -58780747 - B1_Mus1 SINE Alu 0 148 2 8 1083 203 246 0 0 chr9 65295425 65295438 -58780734 + T-rich Low_complexity Low_complexity 2 14 0 8 1083 253 316 136 25 chr9 65295446 65295608 -58780564 - MIRc SINE MIR -2 266 87 8 1083 1268 162 89 99 chr9 65295727 65296029 -58780143 - ORR1B1 LTR MaLR -56 338 40 8 1083 583 266 20 54 chr9 65296647 65296794 -58779378 - ID_B1 SINE B4 -3 221 80 8 1083 1656 156 104 28 chr9 65296806 65297163 -58779009 + ORR1C2 LTR MaLR 1 384 0 8 1083 310 303 190 0 chr9 65297474 65297610 -58778562 - MTD LTR MaLR -78 341 176 8 1083 652 273 112 0 chr9 65297610 65297797 -58778375 - B3 SINE B2 -8 208 1 8 1083 310 303 190 0 chr9 65297797 65297871 -58778301 - MTD LTR MaLR -244 175 92 8 1083 285 309 55 0 chr9 65297869 65297979 -58778193 - RSINE1 SINE B4 -39 126 11 8 1083 220 234 266 0 chr9 65298202 65298266 -58777906 - B4A SINE B4 -210 82 2 8 1083 365 305 31 50 chr9 65298306 65298465 -58777707 + RSINE1 SINE B4 4 159 -6 8 1083 367 250 27 55 chr9 65298507 65298617 -58777555 + B1F SINE Alu 21 127 -22 8 1083 717 173 105 0 chr9 65298658 65298791 -58777381 - B1_Mus2 SINE Alu 0 147 1 8 1083 227 314 62 62 chr9 65299121 65299233 -58776939 + MIRc SINE MIR 77 188 -80 8 1083 804 200 27 59 chr9 65299252 65299438 -58776734 - B3A SINE B2 -16 182 3 8 1083 525 191 35 9 chr9 65299616 65299732 -58776440 - PB1D9 SINE Alu 0 120 2 8 1083 778 207 53 6 chr9 65300304 65300474 -58775698 + ID_B1 SINE B4 2 179 -45 8 1083 391 222 330 64 chr9 65300550 65300682 -58775490 + ID_B1 SINE B4 3 185 -39 8 1083 1528 38 43 0 chr9 65300682 65300868 -58775304 + B2_Mm2 SINE B2 2 195 0 8 1083 391 222 330 64 chr9 65300868 65300908 -58775264 + ID_B1 SINE B4 186 221 -3 8 1083 231 331 109 8 chr9 65300921 65301049 -58775123 + MIRb SINE MIR 63 203 -65 8 1083 451 270 66 20 chr9 65301072 65301223 -58774949 + MLT2B4 LTR ERVL 2 159 -397 8 1083 791 283 45 49 chr9 65301234 65301498 -58774674 + B4A SINE B4 3 265 -27 8 1083 1029 103 14 0 chr9 65301819 65301964 -58774208 + B1_Mus1 SINE Alu 2 148 0 8 1083 21 36 0 0 chr9 65302140 65302168 -58774004 + AT_rich Low_complexity Low_complexity 1 28 0 8 1083 1539 187 91 27 chr9 65302282 65302655 -58773517 - MTC LTR MaLR -23 398 2 8 1083 455 0 18 0 chr9 65302680 65302735 -58773437 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1083 243 0 0 0 chr9 65302735 65302761 -58773411 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1083 218 231 39 0 chr9 65302809 65302861 -58773311 + (CATG)n Simple_repeat Simple_repeat 3 56 0 8 1083 252 211 104 13 chr9 65303007 65303084 -58773088 + BC1_Mm scRNA scRNA 2 85 -67 8 1083 249 309 184 0 chr9 65303092 65303228 -58772944 - MTA_Mm LTR MaLR -76 320 160 8 1083 630 208 0 46 chr9 65303339 65303490 -58772682 - B2_Mm2 SINE B2 -3 192 49 8 1083 1485 63 21 0 chr9 65303491 65303680 -58772492 + B2_Mm2 SINE B2 3 195 0 8 1083 223 208 42 0 chr9 65303680 65303728 -58772444 + GA-rich Low_complexity Low_complexity 2 51 0 8 1083 417 123 0 0 chr9 65303728 65303785 -58772387 - B2_Mm2 SINE B2 -134 61 5 8 1083 224 238 95 0 chr9 65303825 65303888 -58772284 - ID SINE ID -154 70 2 8 1083 781 286 52 0 chr9 65303971 65304184 -58771988 + ID_B1 SINE B4 1 224 0 8 1083 246 292 50 30 chr9 65304238 65304337 -58771835 - MIR3 SINE MIR -18 190 90 8 1083 1018 216 108 15 chr9 65304774 65305033 -58771139 + B4A SINE B4 4 286 -6 8 1083 582 205 0 49 chr9 65305091 65305214 -58770958 + PB1D10 SINE Alu 1 117 0 8 1083 24 0 0 0 chr9 65305240 65305264 -58770908 + AT_rich Low_complexity Low_complexity 1 24 0 8 1083 897 215 50 0 chr9 65305584 65305784 -58770388 - B3 SINE B2 -6 210 1 8 1083 918 127 0 36 chr9 65305910 65306049 -58770123 + B1_Mus2 SINE Alu 13 146 -1 8 1083 927 192 34 23 chr9 65306067 65306243 -58769929 - B3A SINE B2 -19 179 2 8 1083 240 176 19 19 chr9 65306364 65306416 -58769756 - B2_Mm2 SINE B2 -142 53 2 9 1083 1746 135 4 4 chr9 65306416 65306676 -58769496 - RLTR14 LTR ERV1 -122 260 1 9 1083 285 262 0 0 chr9 65306676 65306737 -58769435 + B1_Mur1 SINE Alu 81 141 -8 9 1083 252 0 0 0 chr9 65307169 65307197 -58768975 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1083 756 215 51 28 chr9 65307526 65307703 -58768469 + B3A SINE B2 2 182 -16 9 1083 414 187 0 0 chr9 65307703 65307794 -58768378 + (CA)n Simple_repeat Simple_repeat 1 91 0 9 1083 332 243 156 61 chr9 65307797 65307977 -58768195 + B3A SINE B2 1 197 -1 9 1083 297 0 0 0 chr9 65310313 65310346 -58765826 + (T)n Simple_repeat Simple_repeat 1 33 0 9 1083 836 159 20 40 chr9 65310860 65311011 -58765161 - B1_Mur1 SINE Alu -1 148 1 9 1083 2916 69 13 16 chr9 65311301 65311686 -58764486 - L1_Mus2 LINE L1 0 6566 6183 9 1083 262 234 29 96 chr9 65312269 65312373 -58763799 + MT2B LTR ERVL 168 264 -337 9 1083 650 176 33 8 chr9 65312288 65312408 -58763764 + B1_Mus1 SINE Alu 26 148 0 9 1083 320 212 15 15 chr9 65312544 65312611 -58763561 - ID SINE ID -155 69 3 9 1083 1791 162 78 22 chr9 65313471 65313793 -58762379 - ORR1D1 LTR MaLR -34 340 1 9 1083 3360 38 5 0 chr9 65314431 65314825 -58761347 - MTA_Mm LTR MaLR 0 396 1 9 1083 1270 90 26 26 chr9 65314920 65315113 -58761059 - B2_Mm1a SINE B2 0 193 1 9 1083 367 133 0 16 chr9 65315139 65315200 -58760972 + B1_Mus2 SINE Alu 88 147 0 9 1083 219 36 0 0 chr9 65316208 65316236 -58759936 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1083 279 0 0 0 chr9 65316236 65316266 -58759906 + (TC)n Simple_repeat Simple_repeat 1 31 0 9 1083 301 200 123 0 chr9 65316882 65316947 -58759225 - L1MEg LINE L1 -4131 1953 1881 9 1083 1238 54 0 0 chr9 65316949 65317096 -58759076 - B1_Mus2 SINE Alu 0 147 1 9 1083 2169 107 88 0 chr9 65317369 65317723 -58758449 - RLTR11B LTR ERVK 0 453 69 9 1083 1365 214 101 9 chr9 65317850 65318176 -58757996 - MTE2b LTR MaLR -4 375 20 9 1083 1008 118 14 0 chr9 65318557 65318701 -58757471 - B1_Mus2 SINE Alu -1 146 1 9 1083 537 203 112 8 chr9 65318708 65318842 -58757330 - B1_Mur3 SINE Alu 0 149 2 9 1083 617 224 40 0 chr9 65318879 65319004 -58757168 - RSINE1 SINE B4 -35 130 1 9 1083 235 238 0 0 chr9 65319124 65319166 -58757006 - RSINE1 SINE B4 -122 43 2 9 1083 545 314 87 27 chr9 65319166 65319382 -58756790 - B4A SINE B4 -62 230 2 9 1083 213 231 26 0 chr9 65319686 65319764 -58756408 + (TG)n Simple_repeat Simple_repeat 1 80 0 9 1083 285 296 28 0 chr9 65319981 65320052 -58756120 - ID SINE ID -140 84 12 9 1083 237 218 17 17 chr9 65320368 65320541 -58755631 + (CA)n Simple_repeat Simple_repeat 2 174 0 9 1083 712 264 14 2 chr9 65320936 65321122 -58755050 + B3 SINE B2 1 187 -11 9 1083 206 32 32 0 chr9 65321126 65321157 -58755015 + (TTTTG)n Simple_repeat Simple_repeat 5 36 0 9 1083 692 162 26 0 chr9 65321157 65321274 -58754898 - B1_Mus1 SINE Alu -14 134 15 9 1083 341 276 40 33 chr9 65321593 65321743 -58754429 - L1MB5 LINE L1 0 6184 6034 9 1083 1926 165 260 2 chr9 65321868 65322275 -58753897 - RLTR18B LTR ERVK 0 512 1 9 1083 486 307 62 0 chr9 65322338 65322514 -58753658 - L1MB5 LINE L1 -157 6017 5831 9 1083 272 232 70 126 chr9 65322664 65322807 -58753365 + YREP_Mm Unknown Unknown 162 296 -1516 9 1083 550 224 78 23 chr9 65322691 65322819 -58753353 - ID_B1 SINE B4 0 224 90 9 1083 251 330 9 104 chr9 65323343 65323359 -58752813 - B3A SINE B2 -78 120 17 9 1083 343 245 50 10 chr9 65323359 65323458 -58752714 - B4A SINE B4 -173 119 17 9 1083 27 29 0 0 chr9 65323504 65323538 -58752634 + AT_rich Low_complexity Low_complexity 1 34 0 9 1083 449 211 203 40 chr9 65324334 65324482 -58751690 + B4A SINE B4 109 280 -12 9 1083 231 263 0 17 chr9 65325074 65325132 -58751040 - ID2 SINE ID -25 58 2 9 1083 286 295 24 97 chr9 65325175 65325299 -58750873 + PB1D10 SINE Alu 1 115 -2 9 1083 744 191 184 5 chr9 65325444 65325634 -58750538 + URR1A DNA MER1_type 1 224 -2 9 1083 200 217 0 0 chr9 65325936 65325982 -58750190 + T-rich Low_complexity Low_complexity 2 47 0 9 1083 324 275 0 0 chr9 65325996 65326065 -58750107 - B1_Mus2 SINE Alu -78 69 1 9 1083 447 93 5 0 chr9 65326322 65326400 -58749772 + B1_Mur4 SINE Alu 41 150 0 9 1083 292 270 14 0 chr9 65327125 65327199 -58748973 - B4A SINE B4 -216 76 2 9 1083 266 235 168 36 chr9 65327320 65327457 -58748715 - MER4B-int LTR ERV1 -4612 2146 1992 9 1083 796 118 8 0 chr9 65328541 65328660 -58747512 + B1_Mur4 SINE Alu 31 150 0 9 1083 305 254 60 0 chr9 65328705 65328772 -58747400 + B3A SINE B2 1 71 -127 9 1083 590 246 70 0 chr9 65328811 65328953 -58747219 + B3A SINE B2 5 156 -42 9 1083 361 278 66 21 chr9 65328999 65329129 -58747043 + PB1D7 SINE Alu 1 123 -27 9 1083 505 200 37 30 chr9 65329897 65330031 -58746141 + B1F2 SINE Alu 3 137 -12 9 1083 581 195 139 97 chr9 65330057 65330222 -58745950 + B3 SINE B2 5 176 -19 9 1083 213 308 15 30 chr9 65330237 65330304 -58745868 - ID4 SINE ID -15 68 3 9 1083 687 232 69 110 chr9 65330446 65330540 -58745632 + B3 SINE B2 5 91 -125 9 1083 312 27 0 0 chr9 65330540 65330577 -58745595 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1083 867 109 23 8 chr9 65330585 65330714 -58745458 - B1_Mus1 SINE Alu -17 131 1 9 1083 687 232 69 110 chr9 65330714 65330828 -58745344 + B3 SINE B2 92 213 -3 9 1083 590 224 113 18 chr9 65331004 65331172 -58745000 + B3A SINE B2 1 184 -14 9 1083 398 223 43 14 chr9 65331172 65331302 -58744870 - L1M3 LINE L1 -574 5609 5478 9 1083 912 233 102 23 chr9 65331319 65331340 -58744832 + B4 SINE B4 61 81 -211 9 1083 216 0 0 0 chr9 65331340 65331364 -58744808 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1083 912 233 102 23 chr9 65331364 65331557 -58744615 + B4 SINE B4 82 292 0 9 1083 1068 162 71 0 chr9 65331703 65331900 -58744272 - B3 SINE B2 -5 211 1 9 1083 255 282 51 0 chr9 65332034 65332112 -58744060 - ID4_ SINE ID -1 82 1 9 1083 733 223 160 21 chr9 65332917 65333105 -58743067 + B3 SINE B2 3 216 0 9 1083 880 229 47 0 chr9 65333286 65333478 -58742694 + B3 SINE B2 1 201 -15 9 1083 325 233 65 0 chr9 65333719 65333807 -58742365 + B1F SINE Alu 7 103 -46 9 1083 690 220 109 9 chr9 65333933 65334137 -58742035 + B4 SINE B4 2 226 -66 9 1083 342 265 84 17 chr9 65334137 65334256 -58741916 + RSINE1 SINE B4 4 130 -35 9 1083 636 145 273 33 chr9 65334295 65334445 -58741727 + B2_Mm2 SINE B2 1 186 -9 9 1083 311 192 61 49 chr9 65334517 65334599 -58741573 + ID SINE ID 2 84 -140 9 1083 657 205 9 0 chr9 65335438 65335550 -58740622 - ID_B1 SINE B4 -12 212 100 9 1083 372 256 104 32 chr9 65335462 65335587 -58740585 + YREP_Mm Unknown Unknown 211 344 -1468 9 1083 356 279 45 9 chr9 65335764 65335876 -58740296 + B4A SINE B4 4 119 -173 9 1083 570 285 31 31 chr9 65336445 65336608 -58739564 + RSINE1 SINE B4 3 165 0 9 1083 454 243 61 11 chr9 65336630 65336738 -58739434 + B1_Mur1 SINE Alu 6 117 -3 9 1083 4016 122 99 26 chr9 65337706 65338410 -58737762 + RMER6A LTR ERVK 1 756 0 9 1083 541 267 95 14 chr9 65338887 65339035 -58737137 + RSINE1 SINE B4 1 160 -5 9 1083 296 310 80 11 chr9 65339080 65339168 -58737004 + RSINE1 SINE B4 58 151 -14 9 1083 2928 43 62 26 chr9 65339655 65339868 -58736304 - MTB LTR MaLR 0 400 191 9 1083 1465 69 16 0 chr9 65339868 65340056 -58736116 - B2_Mm2 SINE B2 -4 191 1 9 1083 2928 43 62 26 chr9 65340056 65340228 -58735944 - MTB LTR MaLR -210 190 1 9 1083 227 351 51 44 chr9 65340594 65340731 -58735441 - LTR16A LTR ERVL -313 138 1 9 1083 838 187 149 5 chr9 65340957 65341145 -58735027 + B3 SINE B2 2 216 0 9 1083 349 175 0 16 chr9 65341501 65341565 -58734607 - ID4_ SINE ID -18 65 3 9 1083 22 35 0 0 chr9 65341568 65341597 -58734575 + AT_rich Low_complexity Low_complexity 1 29 0 9 1083 1166 76 0 0 chr9 65341601 65341746 -58734426 + B1_Mus2 SINE Alu 1 145 -2 9 1083 279 0 0 0 chr9 65341746 65341777 -58734395 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9 1083 812 75 200 0 chr9 65341792 65341912 -58734260 + B1_Mus1 SINE Alu 5 148 0 9 1083 280 119 34 0 chr9 65341926 65341985 -58734187 + GA-rich Low_complexity Low_complexity 3 63 0 9 1083 257 273 63 25 chr9 65342231 65342310 -58733862 - ID4 SINE ID 0 83 2 9 1083 407 282 0 26 chr9 65342317 65342430 -58733742 - PB1D10 SINE Alu -6 111 2 9 1083 214 213 21 0 chr9 65342484 65342531 -58733641 + CT-rich Low_complexity Low_complexity 5 52 0 9 1083 298 251 37 34 chr9 65342855 65342968 -58733204 - PB1 SINE Alu -38 111 10 9 1083 326 218 23 11 chr9 65342982 65343070 -58733102 - PB1D10 SINE Alu 0 117 29 9 1083 276 299 71 79 chr9 65343192 65343372 -58732800 - ORR1D2 LTR MaLR -174 196 21 9 1083 260 313 73 15 chr9 65343393 65343461 -58732711 - PB1 SINE Alu -47 73 2 9 1083 761 228 96 0 chr9 65343546 65343713 -58732459 - B3A SINE B2 -15 183 1 9 1083 311 270 168 0 chr9 65343720 65343857 -58732315 - L1MC2 LINE L1 -20 6324 6165 9 1083 320 316 0 66 chr9 65343862 65343907 -58732265 - BC1_Mm scRNA scRNA -37 115 2 1 1083 382 234 0 0 chr9 65343907 65343984 -58732188 - ID SINE ID -146 78 2 1 1083 634 279 82 0 chr9 65343984 65344217 -58731955 - L1MC2 LINE L1 -170 6174 5923 9 1083 2298 70 9 68 chr9 65344286 65344625 -58731547 + ORR1A2 LTR MaLR 1 319 -8 1 1083 331 284 51 11 chr9 65344971 65345096 -58731076 + PB1D10 SINE Alu 3 135 -12 1 1083 1009 97 148 0 chr9 65345311 65345466 -58730706 + B2_Mm1t SINE B2 2 179 -14 1 1083 329 83 351 54 chr9 65345551 65345662 -58730510 + B2_Mm2 SINE B2 47 190 -5 1 1083 642 240 7 40 chr9 65346108 65346260 -58729912 + B1F2 SINE Alu 1 147 -2 1 1083 261 292 11 11 chr9 65346317 65346407 -58729765 + GA-rich Low_complexity Low_complexity 1 90 0 1 1083 240 100 0 0 chr9 65346661 65346701 -58729471 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1083 648 144 178 0 chr9 65346920 65347038 -58729134 + B1_Mur4 SINE Alu 3 141 -9 1 1083 357 293 127 8 chr9 65347060 65347194 -58728978 - MER3 DNA MER1_type -59 150 1 1 1083 692 198 168 16 chr9 65347232 65347417 -58728755 + B3 SINE B2 1 213 -3 1 1083 559 289 35 14 chr9 65347449 65347593 -58728579 + RSINE1 SINE B4 2 148 -17 1 1083 515 238 25 5 chr9 65347620 65347741 -58728431 + PB1D10 SINE Alu 5 117 0 1 1083 329 278 21 6 chr9 65347768 65347861 -58728311 + ID4_ SINE ID 15 105 -47 1 1083 647 285 68 58 chr9 65347969 65348174 -58727998 - B3 SINE B2 -9 207 1 1 1083 302 312 42 7 chr9 65348174 65348316 -58727856 + L1MC4a LINE L1 7736 7882 0 1 1083 207 312 14 16 chr9 65348533 65348635 -58727537 + MIR SINE MIR 49 146 -122 1 1083 947 200 18 144 chr9 65348701 65349034 -58727138 + B4 SINE B4 1 291 -1 1 1083 511 150 25 0 chr9 65349452 65349532 -58726640 + B3A SINE B2 3 84 -114 1 1083 364 320 106 64 chr9 65350424 65350688 -58725484 + B4A SINE B4 4 278 -14 1 1083 448 126 0 22 chr9 65350713 65350802 -58725370 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1083 321 89 0 0 chr9 65352141 65352186 -58723986 + (ATG)n Simple_repeat Simple_repeat 2 46 0 1 1083 799 177 14 34 chr9 65352445 65352591 -58723581 + B1_Mur2 SINE Alu 1 143 -6 1 1083 231 36 0 0 chr9 65352593 65352621 -58723551 + (CACAA)n Simple_repeat Simple_repeat 3 30 0 1 1083 699 246 12 47 chr9 65352631 65352838 -58723334 + B3A SINE B2 21 216 0 1 1083 181 243 133 88 chr9 65353254 65353367 -58722805 + MIR3 SINE MIR 84 201 -7 1 1083 227 154 43 21 chr9 65353879 65353972 -58722200 + (TTAA)n Simple_repeat Simple_repeat 2 96 0 1 1083 868 279 59 5 chr9 65353975 65354177 -58721995 - B3 SINE B2 -2 214 2 1 1083 674 205 144 50 chr9 65354200 65354380 -58721792 - B3A SINE B2 -1 197 1 1 1083 990 143 0 0 chr9 65354404 65354544 -58721628 - B1_Mur1 SINE Alu -8 141 2 1 1083 496 95 107 0 chr9 65354562 65354646 -58721526 - RLTR47_MM LTR ERV1 -86 446 354 1 1083 660 143 7 113 chr9 65354968 65355110 -58721062 + B4A SINE B4 7 133 -159 1 1083 214 306 124 44 chr9 65356587 65356701 -58719471 - MIR3 SINE MIR -15 193 75 1 1083 963 229 57 5 chr9 65356809 65357020 -58719152 + ID_B1 SINE B4 2 223 -1 1 1083 777 192 169 6 chr9 65357169 65357352 -58718820 + B3 SINE B2 1 213 -3 1 1083 286 298 26 105 chr9 65358399 65358590 -58717582 - MT2B LTR ERVL -256 345 170 1 1083 608 221 0 8 chr9 65358472 65358595 -58717577 - B1_Mur1 SINE Alu -27 122 1 1 1083 816 232 36 63 chr9 65358739 65358960 -58717212 + B3 SINE B2 2 216 0 1 1083 259 197 152 0 chr9 65359273 65359339 -58716833 + B3 SINE B2 16 91 -125 1 1083 308 231 35 22 chr9 65359390 65359475 -58716697 - B3A SINE B2 -68 125 46 1 1083 493 325 81 49 chr9 65359437 65359683 -58716489 - MLT1D LTR MaLR -251 254 1 1 1083 664 242 101 6 chr9 65359697 65359771 -58716401 + ID_B1 SINE B4 6 96 -128 1 1083 310 258 33 147 chr9 65359771 65359921 -58716251 + B1F1 SINE Alu 1 133 -16 1 1083 1107 212 29 5 chr9 65360732 65360936 -58715236 - B3 SINE B2 -7 209 1 1 1083 608 250 50 7 chr9 65361115 65361256 -58714916 - ID_B1 SINE B4 0 224 78 1 1083 245 359 35 78 chr9 65361265 65361407 -58714765 - RSINE1 SINE B4 -17 148 13 1 1083 723 248 7 0 chr9 65361432 65361569 -58714603 - B1_Mur1 SINE Alu -9 140 3 1 1083 842 240 57 48 chr9 65361620 65361830 -58714342 + ID_B1 SINE B4 1 212 -12 1 1083 393 22 0 0 chr9 65362397 65362443 -58713729 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1083 214 250 52 65 chr9 65363353 65363392 -58712780 + L2b LINE L2 3300 3340 -35 1 1083 180 111 0 0 chr9 65363392 65363419 -58712753 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1 1083 214 250 52 65 chr9 65363419 65363456 -58712716 + L2b LINE L2 3341 3375 0 1 1083 261 0 0 0 chr9 65363506 65363535 -58712637 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 1 1083 1579 43 0 5 chr9 65363610 65363797 -58712375 + B2_Mm2 SINE B2 2 187 -8 1 1083 279 199 60 65 chr9 65365101 65365194 -58710978 + B4 SINE B4 2 87 -205 1 1083 589 315 0 18 chr9 65365202 65365367 -58710805 + RSINE1 SINE B4 4 165 0 1 1083 543 333 20 36 chr9 65365410 65365606 -58710566 + B3 SINE B2 24 216 0 1 1083 715 215 15 0 chr9 65365618 65365748 -58710424 + RSINE1 SINE B4 9 140 -25 1 1083 519 17 0 0 chr9 65365756 65365816 -58710356 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1083 252 77 0 0 chr9 65365819 65365858 -58710314 + (TAAG)n Simple_repeat Simple_repeat 1 39 0 1 1083 606 290 79 82 chr9 65365869 65366136 -58710036 + B4 SINE B4 11 276 -16 1 1083 325 215 228 0 chr9 65366435 65366514 -58709658 + ID_B1 SINE B4 116 212 -12 1 1083 631 241 134 12 chr9 65366543 65366707 -58709465 + B3A SINE B2 8 191 -7 1 1083 430 226 120 19 chr9 65366707 65366815 -58709357 + B1_Mus1 SINE Alu 15 133 -15 1 1083 288 0 0 0 chr9 65366815 65366847 -58709325 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1 1083 297 0 0 0 chr9 65367282 65367315 -58708857 + (TGG)n Simple_repeat Simple_repeat 1 33 0 1 1083 1108 201 10 35 chr9 65367317 65367518 -58708654 - ID_B1 SINE B4 -14 210 15 1 1083 233 283 37 140 chr9 65367553 65367660 -58708512 + MIR SINE MIR 98 200 -76 1 1083 189 0 0 0 chr9 65367784 65367805 -58708367 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1083 432 0 0 0 chr9 65368163 65368211 -58707961 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1083 217 302 11 75 chr9 65368696 65368789 -58707383 + L2c LINE L2 3049 3135 -252 1 1083 26 0 0 0 chr9 65369672 65369698 -58706474 + AT_rich Low_complexity Low_complexity 1 26 0 1 1083 226 307 83 16 chr9 65369739 65369834 -58706338 + PB1D9 SINE Alu 15 115 -5 1 1083 201 74 0 0 chr9 65369840 65369867 -58706305 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1083 1361 77 44 0 chr9 65369918 65370100 -58706072 - B2_Mm2 SINE B2 -5 190 1 1 1083 1213 68 0 0 chr9 65370207 65370354 -58705818 + B1_Mus2 SINE Alu 1 147 0 1 1083 246 143 0 0 chr9 65370355 65370404 -58705768 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1083 282 29 0 0 chr9 65370414 65370449 -58705723 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1083 333 239 0 27 chr9 65370525 65370598 -58705574 - ID4 SINE ID -11 72 2 1 1083 1008 226 18 23 chr9 65370886 65371103 -58705069 - ID_B1 SINE B4 0 224 9 1 1083 722 169 92 35 chr9 65371112 65371126 -58705046 - B1_Mur1 SINE Alu 0 149 140 1 1083 387 0 0 0 chr9 65371126 65371169 -58705003 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1083 722 169 92 35 chr9 65371169 65371295 -58704877 - B1_Mur1 SINE Alu -10 139 1 1 1083 219 319 78 17 chr9 65371302 65371417 -58704755 - B1F SINE Alu 0 149 28 1 1083 360 256 13 0 chr9 65371664 65371742 -58704430 + ID SINE ID 5 83 -141 1 1083 239 38 56 37 chr9 65371802 65371856 -58704316 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1083 538 250 9 0 chr9 65372111 65372219 -58703953 - RSINE1 SINE B4 -37 128 20 1 1083 527 221 78 73 chr9 65372220 65372380 -58703792 - ID_B1 SINE B4 -66 226 57 1 1083 215 277 160 0 chr9 65372335 65372429 -58703743 - B3A SINE B2 -88 110 2 1 1083 413 144 9 28 chr9 65372432 65372539 -58703633 + CT-rich Low_complexity Low_complexity 4 108 0 1 1083 558 250 0 16 chr9 65372539 65372661 -58703511 - ID_B1 SINE B4 0 224 105 1 1083 466 211 121 68 chr9 65372700 65372832 -58703340 - B1F SINE Alu -9 140 2 1 1083 841 227 63 39 chr9 65372934 65373140 -58703032 + B3 SINE B2 1 211 -5 1 1083 213 39 0 0 chr9 65373164 65373190 -58702982 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1 1083 2201 133 134 19 chr9 65373214 65373588 -58702584 + MTC LTR MaLR 5 421 0 1 1083 221 325 117 0 chr9 65374067 65374144 -58702028 + BC1_Mm scRNA scRNA 7 92 -60 1 1083 719 211 241 0 chr9 65374184 65374350 -58701822 + B3 SINE B2 2 207 -9 1 1083 581 129 20 0 chr9 65374621 65374722 -58701450 + (TTTC)n Simple_repeat Simple_repeat 4 106 0 1 1083 769 153 61 0 chr9 65374740 65374871 -58701301 - B1_Mur1 SINE Alu -8 141 3 1 1083 450 263 17 42 chr9 65374932 65375051 -58701121 + PB1D10 SINE Alu 1 116 -1 1 1083 964 140 0 0 chr9 65375054 65375197 -58700975 + B1_Mur3 SINE Alu 2 144 -5 1 1083 752 200 132 0 chr9 65375235 65375425 -58700747 + B3 SINE B2 2 216 0 1 1083 207 133 0 0 chr9 65375429 65375474 -58700698 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1083 1269 41 0 0 chr9 65375476 65375623 -58700549 - B1_Mus2 SINE Alu 0 147 1 1 1083 231 280 215 21 chr9 65375629 65375866 -58700306 - L2 LINE L2 -606 2813 2531 1 1083 247 345 32 43 chr9 65376550 65376644 -58699528 + B1F1 SINE Alu 1 93 -56 1 1083 638 226 0 36 chr9 65376662 65376800 -58699372 + RSINE1 SINE B4 2 134 -31 1 1083 234 0 0 0 chr9 65376814 65376840 -58699332 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1083 1159 214 9 14 chr9 65376876 65377094 -58699078 + ID_B1 SINE B4 6 222 -2 1 1083 292 25 0 24 chr9 65377122 65377163 -58699009 + B2_Mm2 SINE B2 1 40 -155 1 1083 1212 75 0 0 chr9 65377163 65377310 -58698862 + B1_Mus2 SINE Alu 1 147 0 1 1083 203 332 22 30 chr9 65377547 65377661 -58698511 - MIRb SINE MIR -112 156 44 1 1083 241 276 17 0 chr9 65377895 65377953 -58698219 + RSINE1 SINE B4 3 61 -104 1 1083 358 157 24 0 chr9 65378002 65378085 -58698087 + CT-rich Low_complexity Low_complexity 1 85 0 1 1083 255 330 51 10 chr9 65378144 65378242 -58697930 + ID_B1 SINE B4 76 177 -47 1 1083 428 226 54 0 chr9 65378160 65378253 -58697919 + PB1D10 SINE Alu 10 107 -10 1 1083 238 326 86 0 chr9 65378271 65378458 -58697714 + L1M1 LINE L1 5716 5918 -385 1 1083 669 258 84 26 chr9 65378490 65378681 -58697491 - B3 SINE B2 -13 203 2 1 1083 740 191 0 4 chr9 65378734 65378982 -58697190 + (TG)n Simple_repeat Simple_repeat 1 246 0 1 1083 187 309 10 50 chr9 65379293 65379392 -58696780 + L2b LINE L2 3070 3164 -211 1 1083 1117 226 34 38 chr9 65379902 65380275 -58695897 + B4A SINE B4 1 276 -16 1 1083 547 200 309 0 chr9 65380315 65380480 -58695692 - B3 SINE B2 0 216 1 1 1083 1274 81 69 0 chr9 65380506 65380665 -58695507 + B2_Mm2 SINE B2 4 173 -22 1 1083 231 36 0 0 chr9 65380665 65380693 -58695479 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1083 1274 81 69 0 chr9 65380693 65380707 -58695465 + B2_Mm2 SINE B2 174 187 -8 1 1083 462 79 0 0 chr9 65380743 65380806 -58695366 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1083 235 239 155 0 chr9 65381141 65381167 -58695005 + PB1D7 SINE Alu 39 120 0 1 1083 288 156 0 0 chr9 65381167 65381212 -58694960 + ID_B1 SINE B4 180 224 0 1 1083 274 318 11 0 chr9 65381240 65381328 -58694844 - L2a LINE L2 -23 3403 3315 1 1083 298 286 78 0 chr9 65381340 65381417 -58694755 - PB1D10 SINE Alu -20 97 15 1 1083 414 0 0 0 chr9 65381452 65381498 -58694674 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1083 327 65 0 0 chr9 65381498 65381543 -58694629 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1083 384 321 0 36 chr9 65381569 65381708 -58694464 - B4A SINE B4 -2 290 157 1 1083 239 131 129 16 chr9 65381735 65381797 -58694375 + MLT1N2 LTR MaLR 105 173 -389 1 1083 316 246 0 17 chr9 65382331 65382389 -58693783 - ID_B1 SINE B4 -16 208 152 1 1083 262 270 0 0 chr9 65382423 65382486 -58693686 - ID SINE ID -155 69 7 1 1083 202 244 66 55 chr9 65382496 65382587 -58693585 + L2c LINE L2 3105 3196 -191 1 1083 966 142 7 26 chr9 65382694 65382846 -58693326 - B1_Mur4 SINE Alu -1 149 1 1 1083 429 20 0 0 chr9 65383348 65383398 -58692774 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1083 429 70 0 0 chr9 65383596 65383653 -58692519 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 1 1083 1229 48 0 0 chr9 65383653 65383800 -58692372 - B1_Mus2 SINE Alu 0 147 1 1 1083 240 246 16 0 chr9 65383806 65383867 -58692305 + MIR3 SINE MIR 108 169 -39 1 1083 335 295 27 0 chr9 65384210 65384348 -58691824 - MIR3 SINE MIR -52 156 12 1 1083 218 273 26 0 chr9 65384353 65384430 -58691742 + L3b LINE CR1 204 282 -200 1 1083 244 213 49 0 chr9 65384680 65384741 -58691431 - MIR SINE MIR -118 144 81 1 1083 390 280 19 71 chr9 65384784 65384938 -58691234 + ID_B1 SINE B4 79 224 0 1 1083 726 151 25 16 chr9 65384818 65384939 -58691233 + B1_Mur1 SINE Alu 27 148 -1 1 1083 457 267 60 15 chr9 65384957 65385090 -58691082 + B1F SINE Alu 4 142 -7 1 1083 589 256 44 19 chr9 65385228 65385387 -58690785 - RSINE1 SINE B4 0 165 3 1 1083 366 250 27 63 chr9 65385390 65385501 -58690671 - PB1D10 SINE Alu 0 117 11 1 1083 306 252 28 83 chr9 65385409 65385517 -58690655 - ID_B1 SINE B4 -45 179 78 1 1083 221 208 0 19 chr9 65385517 65385571 -58690601 + (TTA)n Simple_repeat Simple_repeat 1 53 0 1 1083 225 290 167 31 chr9 65385571 65385667 -58690505 - PB1D10 SINE Alu -8 109 1 1 1083 515 228 8 30 chr9 65386410 65386541 -58689631 + B1_Mur1 SINE Alu 22 149 0 1 1083 428 91 15 0 chr9 65386682 65386748 -58689424 + (TCCC)n Simple_repeat Simple_repeat 4 70 0 1 1083 501 224 27 45 chr9 65386762 65386874 -58689298 - PB1D10 SINE Alu -7 110 1 1 1083 507 265 8 41 chr9 65387244 65387366 -58688806 + B1F SINE Alu 3 120 -29 1 1083 973 39 130 8 chr9 65387397 65387528 -58688644 - B1_Mus1 SINE Alu 0 148 2 1 1083 188 211 35 17 chr9 65387579 65387637 -58688535 - L3 LINE CR1 -355 4134 4076 1 1083 1221 102 0 11 chr9 65387879 65388058 -58688114 + B2_Mm2 SINE B2 7 183 -12 1 1083 222 37 0 0 chr9 65388062 65388089 -58688083 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1083 751 217 66 44 chr9 65388106 65388289 -58687883 + B3A SINE B2 10 196 -2 1 1083 942 236 25 0 chr9 65388334 65388537 -58687635 + B3 SINE B2 8 215 -1 1 1083 230 235 0 0 chr9 65388590 65388641 -58687531 + PB1D9 SINE Alu 70 120 0 1 1083 311 254 0 42 chr9 65388684 65388768 -58687404 - ID4 SINE ID -65 87 9 1 1083 243 103 0 0 chr9 65388774 65388813 -58687359 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1083 941 92 0 0 chr9 65388813 65388943 -58687229 - B1_Mus1 SINE Alu -10 138 9 1 1083 261 336 8 39 chr9 65388949 65389079 -58687093 + YREP_Mm Unknown Unknown 186 311 -1501 1 1083 242 286 0 0 chr9 65389023 65389086 -58687086 - B4A SINE B4 -147 145 83 1 1083 625 248 26 0 chr9 65389121 65389274 -58686898 - RSINE1 SINE B4 -7 158 2 1 1083 1241 232 100 29 chr9 65390104 65390513 -58685659 + L1MA4 LINE L1 5430 5867 -433 1 1083 630 281 75 15 chr9 65390515 65390782 -58685390 + B4A SINE B4 2 284 -8 1 1083 343 218 119 0 chr9 65390837 65390938 -58685234 + L1MA4 LINE L1 5839 5951 -352 1 1083 571 314 20 0 chr9 65390938 65391091 -58685081 + RSINE1 SINE B4 3 158 -7 1 1083 654 253 0 7 chr9 65391126 65391273 -58684899 - B1_Mur1 SINE Alu -2 147 2 1 1083 529 224 131 29 chr9 65391301 65391476 -58684696 + B3A SINE B2 4 196 -2 1 1083 1017 113 0 7 chr9 65391476 65391626 -58684546 + B1_Mur4 SINE Alu 1 150 0 1 1083 23 0 0 0 chr9 65391634 65391657 -58684515 + AT_rich Low_complexity Low_complexity 1 23 0 1 1083 1199 106 28 6 chr9 65391667 65391848 -58684324 + B2_Mm2 SINE B2 1 185 -10 1 1083 555 198 155 0 chr9 65391860 65391976 -58684196 + B1_Mus1 SINE Alu 2 135 -13 1 1083 522 0 0 0 chr9 65391977 65392035 -58684137 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1083 605 283 55 0 chr9 65392049 65392194 -58683978 + B3A SINE B2 1 153 -45 1 1083 447 107 0 0 chr9 65392197 65392272 -58683900 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1083 28 0 0 0 chr9 65392412 65392440 -58683732 + AT_rich Low_complexity Low_complexity 1 28 0 1 1083 610 170 9 9 chr9 65392623 65392736 -58683436 - B1_Mur1 SINE Alu -1 148 36 1 1083 245 215 36 48 chr9 65392677 65392760 -58683412 - 4.5SRNA scRNA scRNA -6 88 7 1 1083 291 251 42 0 chr9 65392881 65392952 -58683220 - B1_Mur3 SINE Alu -72 76 2 1 1083 338 267 126 25 chr9 65392957 65392973 -58683199 - B1F SINE Alu -8 141 11 1 1083 380 245 97 10 chr9 65392973 65393076 -58683096 - ID_B1 SINE B4 -21 203 92 1 1083 226 239 14 82 chr9 65393029 65393102 -58683070 + YREP_Mm Unknown Unknown 260 327 -1485 1 1083 490 292 155 5 chr9 65393112 65393305 -58682867 + ID_B1 SINE B4 1 222 -2 1 1083 464 236 166 40 chr9 65394169 65394368 -58681804 - ID_B1 SINE B4 0 224 1 1 1083 396 341 8 31 chr9 65394891 65395021 -58681151 - ID_B1 SINE B4 -94 130 4 1 1083 673 179 104 0 chr9 65395111 65395245 -58680927 + B1_Mur4 SINE Alu 3 150 0 1 1083 238 323 98 12 chr9 65395282 65395445 -58680727 - MIRb SINE MIR -34 234 58 1 1083 221 255 0 0 chr9 65396155 65396206 -58679966 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1083 232 167 0 0 chr9 65396448 65396484 -58679688 - MER20 DNA MER1_type -6 213 178 1 1083 414 259 0 0 chr9 65396508 65396593 -58679579 - B4A SINE B4 -115 177 93 1 1083 180 133 50 0 chr9 65396631 65396691 -58679481 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1083 673 236 34 64 chr9 65396691 65396895 -58679277 - B3A SINE B2 0 198 1 1 1083 232 314 58 10 chr9 65397519 65397622 -58678550 + L2b LINE L2 3053 3160 -215 1 1083 243 0 0 0 chr9 65398114 65398141 -58678031 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1083 801 193 0 0 chr9 65398234 65398379 -58677793 - ID_B1 SINE B4 0 224 80 1 1083 249 306 40 20 chr9 65398484 65398584 -58677588 + MIR3 SINE MIR 106 207 -1 1 1083 302 290 21 0 chr9 65399557 65399650 -58676522 - ID_B1 SINE B4 -128 96 2 1 1083 243 0 0 0 chr9 65399774 65399801 -58676371 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1083 313 149 87 29 chr9 65399805 65399874 -58676298 - PB1D9 SINE Alu 0 120 48 1 1083 245 260 0 88 chr9 65400777 65400857 -58675315 + tRNA-Ala-GCY_ tRNA tRNA 1 73 -2 1 1083 804 142 90 0 chr9 65400970 65401104 -58675068 - B1_Mus2 SINE Alu -1 146 1 1 1083 265 278 130 22 chr9 65401177 65401269 -58674903 + ID_B1 SINE B4 95 196 -28 1 1083 338 300 9 57 chr9 65401305 65401411 -58674761 + PB1D10 SINE Alu 12 112 -5 1 1083 473 188 19 29 chr9 65401421 65401525 -58674647 + B1_Mur1 SINE Alu 47 149 0 1 1083 447 229 10 10 chr9 65401533 65401630 -58674542 + PB1D7 SINE Alu 1 97 -23 1 1083 549 219 6 141 chr9 65401652 65401822 -58674350 + B1_Mur2 SINE Alu 3 149 0 1 1083 327 85 0 0 chr9 65401822 65401869 -58674303 + (GAAA)n Simple_repeat Simple_repeat 1 47 0 1 1083 514 121 12 0 chr9 65401925 65402008 -58674164 - B1_Mur4 SINE Alu -64 86 3 1 1084 1080 205 9 0 chr9 65406763 65406973 -58669199 + ID_B1 SINE B4 2 213 -11 1 1084 195 42 0 0 chr9 65407654 65407678 -58668494 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 1 1084 363 324 56 0 chr9 65407681 65407860 -58668312 + L1MB3 LINE L1 5932 6120 -63 1 1084 361 242 33 132 chr9 65407865 65407886 -58668286 + MT2B LTR ERVL 142 147 -454 1 1084 615 197 28 90 chr9 65407886 65408031 -58668141 + B1_Mur1 SINE Alu 1 136 -13 1 1084 180 111 0 0 chr9 65408031 65408058 -58668114 + (GTTTG)n Simple_repeat Simple_repeat 1 27 0 1 1084 523 289 77 26 chr9 65408144 65408417 -58667755 - B4A SINE B4 -1 291 5 1 1084 514 252 6 81 chr9 65408447 65408620 -58667552 + ID_B1 SINE B4 2 161 -63 1 1084 333 191 90 60 chr9 65408548 65408648 -58667524 + PB1D10 SINE Alu 15 117 0 1 1084 198 214 0 0 chr9 65408785 65408827 -58667345 + MIRm SINE MIR 235 276 0 1 1084 207 352 0 27 chr9 65409880 65409953 -58666219 + G-rich Low_complexity Low_complexity 2 72 0 1 1084 957 134 149 5 chr9 65411194 65411382 -58664790 + B3 SINE B2 2 216 0 1 1084 234 114 0 0 chr9 65412466 65412501 -58663671 + RMER15 LTR ERVL 17 51 -524 1 1084 1939 127 28 45 chr9 65412512 65412866 -58663306 + RMER15 LTR ERVL 228 575 0 1 1084 396 0 0 0 chr9 65413031 65413075 -58663097 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1084 276 139 0 0 chr9 65413076 65413119 -58663053 - B1_Mur1 SINE Alu -34 115 73 1 1084 222 273 227 0 chr9 65413304 65413370 -58662802 + MER5A DNA MER1_type 36 116 -73 1 1084 673 165 0 9 chr9 65413394 65413510 -58662662 - B1_Mur3 SINE Alu -5 144 30 1 1084 810 214 48 8 chr9 65413633 65413872 -58662300 + Lx8 LINE L1 6395 6700 -773 1 1084 1045 168 73 0 chr9 65413879 65414070 -58662102 + B3 SINE B2 5 209 -7 1 1084 779 174 7 27 chr9 65414099 65414247 -58661925 - B1_Mus2 SINE Alu 0 147 3 1 1084 1802 270 88 10 chr9 65414285 65414873 -58661299 - Lx8 LINE L1 -146 7327 6694 1 1084 648 204 64 21 chr9 65414906 65415046 -58661126 + B1_Mus1 SINE Alu 2 147 -1 1 1084 576 198 111 0 chr9 65415091 65415217 -58660955 - B1_Mur3 SINE Alu 0 149 10 1 1084 333 306 74 27 chr9 65415217 65415239 -58660933 - ID_B1 SINE B4 0 224 70 1 1084 1207 41 0 0 chr9 65415326 65415472 -58660700 + B1_Mus2 SINE Alu 2 147 0 1 1084 1186 108 0 63 chr9 65415527 65415734 -58660438 + B2_Mm2 SINE B2 2 195 0 1 1084 184 319 174 17 chr9 65415919 65416034 -58660138 + MER5B DNA MER1_type 46 178 0 1 1084 240 265 0 0 chr9 65416456 65416505 -58659667 + tRNA-Ala-GCY_ tRNA tRNA 20 68 -7 1 1084 466 179 0 0 chr9 65416539 65416617 -58659555 - RSINE1 SINE B4 -50 115 38 1 1084 1650 216 61 3 chr9 65416610 65417004 -58659168 - MTD LTR MaLR -24 395 4 1 1084 365 238 0 0 chr9 65417004 65417082 -58659090 + ID_B1 SINE B4 90 167 -57 1 1084 290 315 0 43 chr9 65417082 65417118 -58659054 + PB1D10 SINE Alu 7 117 0 1 1084 351 0 0 0 chr9 65417766 65417805 -58658367 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1084 310 259 58 23 chr9 65418124 65418211 -58657961 + B1F2 SINE Alu 59 148 -1 1 1084 619 112 9 9 chr9 65418211 65418319 -58657853 + (TAGA)n Simple_repeat Simple_repeat 1 108 0 1 1084 222 37 0 0 chr9 65418519 65418546 -58657626 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1084 488 226 11 0 chr9 65418546 65418639 -58657533 - PB1D7 SINE Alu -11 109 16 1 1084 381 273 101 71 chr9 65418769 65419037 -58657135 + B4 SINE B4 1 276 -16 1 1084 276 154 96 0 chr9 65419214 65419266 -58656906 - B1_Mur4 SINE Alu -81 69 13 1 1084 1302 87 32 0 chr9 65419268 65419453 -58656719 + B2_Mm1a SINE B2 2 192 -1 1 1084 213 200 0 0 chr9 65419616 65419661 -58656511 + C-rich Low_complexity Low_complexity 1 45 0 1 1084 606 237 44 15 chr9 65419694 65419831 -58656341 + B1_Mur1 SINE Alu 8 148 -1 1 1084 991 132 6 6 chr9 65419834 65420009 -58656163 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 1 1084 787 255 59 0 chr9 65420020 65420224 -58655948 + B3 SINE B2 1 216 0 1 1084 671 172 50 43 chr9 65420526 65420666 -58655506 + B1_Mur1 SINE Alu 7 147 -2 1 1084 295 331 101 12 chr9 65421077 65421245 -58654927 - MIRb SINE MIR -66 202 20 1 1084 183 287 111 0 chr9 65421317 65421425 -58654747 - L2c LINE L2 -77 3349 3230 1 1084 437 295 42 60 chr9 65421425 65421591 -58654581 + RSINE1 SINE B4 2 164 -1 1 1084 339 85 0 0 chr9 65421592 65421639 -58654533 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1084 1024 44 0 15 chr9 65421691 65421828 -58654344 + B2_Mm2 SINE B2 6 140 -55 1 1084 895 51 65 14 chr9 65421832 65421945 -58654227 + B2_Mm1a SINE B2 49 160 -33 1 1084 387 0 0 0 chr9 65421945 65421988 -58654184 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1084 1516 42 5 0 chr9 65421988 65422179 -58653993 + B2_Mm1a SINE B2 2 193 0 1 1084 895 51 65 14 chr9 65422179 65422202 -58653970 + B2_Mm1a SINE B2 161 191 -2 1 1084 581 162 9 0 chr9 65422236 65422347 -58653825 + GA-rich Low_complexity Low_complexity 4 115 0 1 1084 184 280 70 14 chr9 65422390 65422480 -58653692 - L2c LINE L2 -203 3184 3087 1 1084 269 247 13 27 chr9 65423285 65423360 -58652812 + MIR SINE MIR 87 160 -102 1 1084 307 232 130 10 chr9 65423424 65423524 -58652648 + L2a LINE L2 3314 3425 -1 1 1084 991 83 0 46 chr9 65423909 65424060 -58652112 + B1_Mus1 SINE Alu 5 148 0 1 1084 436 210 0 34 chr9 65425134 65425244 -58650928 + B1_Mur1 SINE Alu 32 140 -9 1 1084 293 184 0 106 chr9 65425168 65425253 -58650919 + ID_B1 SINE B4 146 221 -3 1 1084 653 204 159 6 chr9 65425537 65425700 -58650472 + B3 SINE B2 1 188 -28 1 1084 441 0 0 0 chr9 65425700 65425749 -58650423 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1084 216 308 31 0 chr9 65426824 65426889 -58649283 - MIR SINE MIR -60 148 82 1 1084 234 292 14 0 chr9 65427465 65427537 -58648635 + MIRm SINE MIR 88 160 -116 1 1084 21 0 0 0 chr9 65427863 65427884 -58648288 + GC_rich Low_complexity Low_complexity 1 21 0 1 1084 213 193 0 50 chr9 65428138 65428198 -58647974 + G-rich Low_complexity Low_complexity 4 60 0 1 1084 296 48 0 23 chr9 65428230 65428273 -58647899 + (CGGGG)n Simple_repeat Simple_repeat 1 42 0 1 1084 297 0 0 0 chr9 65428767 65428800 -58647372 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1084 1180 178 5 0 chr9 65429043 65429251 -58646921 + B3 SINE B2 1 209 -7 1 1084 1170 48 0 0 chr9 65429261 65429407 -58646765 - B1_Mus2 SINE Alu 0 147 2 1 1084 525 121 12 0 chr9 65429455 65429538 -58646634 + RMER15 LTR ERVL 1 84 -491 1 1084 684 122 7 69 chr9 65429541 65429674 -58646498 + B1_Mur4 SINE Alu 17 148 -2 1 1084 2362 77 3 24 chr9 65429775 65429900 -58646272 + ORR1A2 LTR MaLR 1 124 -203 1 1084 1584 32 0 0 chr9 65429900 65430089 -58646083 - B2_Mm1a SINE B2 -4 189 1 1 1084 2362 77 3 24 chr9 65430089 65430296 -58645876 + ORR1A2 LTR MaLR 125 326 -1 1 1084 25 0 0 0 chr9 65431297 65431322 -58644850 + AT_rich Low_complexity Low_complexity 1 25 0 1 1084 1059 77 14 0 chr9 65431353 65431496 -58644676 + B1_Mus1 SINE Alu 4 148 0 1 1084 1604 31 0 0 chr9 65431500 65431692 -58644480 + B2_Mm1t SINE B2 2 193 0 1 1084 972 61 0 0 chr9 65431706 65431837 -58644335 + B1_Mus2 SINE Alu 17 147 0 1 1084 208 67 21 62 chr9 65431842 65431890 -58644282 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1084 618 109 147 8 chr9 65431916 65432045 -58644127 - B1_Mus1 SINE Alu -1 147 1 1 1084 1358 50 28 0 chr9 65432055 65432236 -58643936 - B2_Mm1a SINE B2 -1 192 7 1 1084 707 199 96 0 chr9 65432245 65432401 -58643771 + B3 SINE B2 41 211 -5 1 1084 418 256 58 36 chr9 65432460 65432598 -58643574 + B1F SINE Alu 1 141 -8 1 1084 662 143 0 0 chr9 65432613 65432718 -58643454 + B1_Mus2 SINE Alu 43 147 0 1 1084 399 21 0 0 chr9 65432719 65432767 -58643405 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1084 568 250 0 30 chr9 65432789 65432921 -58643251 - RSINE1 SINE B4 -25 140 13 1 1084 259 119 0 106 chr9 65432932 65432998 -58643174 + L1ME2z LINE L1 6379 6437 -7 1 1084 1284 90 21 16 chr9 65433031 65433223 -58642949 + B2_Mm2 SINE B2 2 194 -1 1 1084 810 64 0 0 chr9 65433232 65433342 -58642830 + B1_Mus1 SINE Alu 39 148 0 1 1084 192 77 0 0 chr9 65433342 65433368 -58642804 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 1 1084 26 0 0 0 chr9 65433422 65433448 -58642724 + AT_rich Low_complexity Low_complexity 1 26 0 1 1084 527 204 296 0 chr9 65433625 65433787 -58642385 + B3 SINE B2 2 211 -5 1 1084 392 300 60 60 chr9 65433845 65433994 -58642178 + ID_B1 SINE B4 60 208 -16 1 1084 200 59 29 0 chr9 65434012 65434046 -58642126 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 1 1084 225 292 56 0 chr9 65434067 65434139 -58642033 + MIR3 SINE MIR 130 205 -3 1 1084 301 235 43 29 chr9 65434189 65434259 -58641913 + PB1 SINE Alu 21 91 -36 1 1084 723 33 0 0 chr9 65434262 65434354 -58641818 + B1_Mus2 SINE Alu 56 147 0 1 1084 216 0 0 0 chr9 65434354 65434378 -58641794 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1084 351 220 141 11 chr9 65437933 65438025 -58638147 - ID_B1 SINE B4 -19 205 102 1 1084 223 287 155 19 chr9 65437937 65438040 -58638132 - B1F SINE Alu -26 123 7 1 1084 225 119 0 0 chr9 65438148 65438190 -58637982 + (CAAT)n Simple_repeat Simple_repeat 3 44 0 1 1084 382 239 27 18 chr9 65438201 65438312 -58637860 + PB1D10 SINE Alu 5 116 -1 1 1084 860 255 68 10 chr9 65438373 65438579 -58637593 + B4A SINE B4 3 220 -72 1 1084 261 98 0 0 chr9 65438580 65438621 -58637551 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1084 825 159 21 0 chr9 65438623 65438768 -58637404 + B1_Mur2 SINE Alu 2 149 0 1 1084 1365 64 32 0 chr9 65438845 65439033 -58637139 + B2_Mm2 SINE B2 2 195 0 1 1084 234 0 0 0 chr9 65439051 65439077 -58637095 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1084 225 94 0 0 chr9 65439082 65439114 -58637058 + (GAA)n Simple_repeat Simple_repeat 2 33 0 1 1084 234 81 0 0 chr9 65440068 65440105 -58636067 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1084 1182 54 0 0 chr9 65440105 65440253 -58635919 - B1_Mus1 SINE Alu 0 148 1 1 1084 246 200 111 28 chr9 65440727 65440799 -58635373 - B1_Mur3 SINE Alu -70 79 2 1 1084 442 283 18 0 chr9 65441445 65441558 -58634614 - ID_B1 SINE B4 -29 195 81 1 1084 961 156 10 50 chr9 65441883 65442085 -58634087 + B2_Mm2 SINE B2 1 194 -1 1 1084 181 293 48 57 chr9 65442498 65442603 -58633569 + L3 LINE CR1 993 1096 -3393 1 1084 651 289 7 0 chr9 65443004 65443156 -58633016 - RSINE1 SINE B4 -4 161 9 1 1084 325 358 74 116 chr9 65443169 65443548 -58632624 - MLT1A0 LTR MaLR -2 363 1 1 1084 1646 37 0 0 chr9 65444095 65444285 -58631887 + B2_Mm1a SINE B2 2 191 -2 1 1084 480 154 126 63 chr9 65444295 65444406 -58631766 + B3A SINE B2 1 118 -80 1 1084 495 248 50 0 chr9 65444403 65444524 -58631648 - B3A SINE B2 -45 153 27 1 1084 667 141 64 32 chr9 65444557 65444682 -58631490 - RMER6B LTR ERVK -48 413 285 1 1084 1315 85 0 0 chr9 65444682 65444858 -58631314 + B2_Mm2 SINE B2 1 176 -19 1 1084 1097 58 0 0 chr9 65444867 65445004 -58631168 + B1_Mus1 SINE Alu 11 147 -1 1 1084 1813 87 29 74 chr9 65445016 65445150 -58631022 - RMER6B LTR ERVK -165 296 172 1 1084 1207 116 25 40 chr9 65445150 65445348 -58630824 - B2_Mm2 SINE B2 0 195 1 1 1084 1813 87 29 74 chr9 65445348 65445523 -58630649 - RMER6B LTR ERVK -290 171 1 1 1084 2815 113 18 7 chr9 65445523 65445961 -58630211 - MYSERV6-int LTR ERVK -1191 7768 7326 1 1084 1137 140 6 16 chr9 65445961 65445984 -58630188 - B2_Mm2 SINE B2 -15 180 157 1 1084 180 0 0 0 chr9 65445984 65446004 -58630168 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1084 1137 140 6 16 chr9 65446004 65446162 -58630010 - B2_Mm2 SINE B2 -39 156 2 1 1084 2975 122 57 18 chr9 65446163 65446671 -58629501 - MYSERV6-int LTR ERVK -1635 7324 6797 1 1084 189 74 0 0 chr9 65446728 65446755 -58629417 + (G)n Simple_repeat Simple_repeat 1 27 0 1 1084 2127 125 37 88 chr9 65446944 65447153 -58629019 - MYSERV6-int LTR ERVK -2164 6795 6572 1 1084 207 0 0 0 chr9 65447153 65447176 -58628996 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1084 2127 125 37 88 chr9 65447176 65447351 -58628821 - MYSERV6-int LTR ERVK -2388 6571 6404 1 1084 1222 34 0 7 chr9 65447351 65447497 -58628675 + B1_Mm SINE Alu 3 147 0 1 1084 2127 125 37 88 chr9 65447497 65447567 -58628605 - MYSERV6-int LTR ERVK -2556 6403 6364 1 1084 368 160 11 22 chr9 65447567 65447641 -58628531 - B1_Mus1 SINE Alu -78 71 1 1 1084 350 109 156 0 chr9 65447641 65447705 -58628467 - MYSERV6-int LTR ERVK -2676 6283 6210 1 1084 3287 147 50 31 chr9 65448131 65448798 -58627374 - MYSERV6-int LTR ERVK -2734 6225 5547 1 1084 1405 134 128 20 chr9 65448831 65449096 -58627076 - RMER6B LTR ERVK -2 459 166 1 1084 1208 41 14 0 chr9 65449096 65449241 -58626931 - B1_Mus2 SINE Alu 0 147 1 1 1084 1405 167 53 135 chr9 65449241 65449410 -58626762 - RMER6B LTR ERVK -241 220 62 1 1084 1256 48 0 0 chr9 65449410 65449556 -58626616 + B1_Mm SINE Alu 2 147 0 1 1084 1077 174 36 162 chr9 65449556 65449634 -58626538 - RMER6B LTR ERVK -400 61 2 1 1084 374 0 22 0 chr9 65450048 65450094 -58626078 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1084 189 414 8 0 chr9 65450463 65450560 -58625612 - L2a LINE L2 -13 3413 3263 1 1084 799 321 38 35 chr9 65450642 65450680 -58625492 - MT2B LTR ERVL -8 593 558 1 1084 300 53 0 0 chr9 65450680 65450718 -58625454 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 1 1084 799 321 38 35 chr9 65450718 65450729 -58625443 - MT2B LTR ERVL -44 557 548 1 1084 1160 89 0 0 chr9 65450729 65450875 -58625297 + B1_Mus2 SINE Alu 2 147 0 1 1084 799 296 60 76 chr9 65450875 65451300 -58624872 - MT2B LTR ERVL -54 547 1 1 1084 199 191 30 60 chr9 65451300 65451367 -58624805 - L2a LINE L2 -261 3165 3101 1 1084 1297 88 33 0 chr9 65451824 65452006 -58624166 - B2_Mm2 SINE B2 -6 189 2 1 1084 454 254 34 0 chr9 65452019 65452137 -58624035 - ID_B1 SINE B4 -70 154 33 1 1084 1246 105 15 73 chr9 65452472 65452538 -58623634 + B2_Mm2 SINE B2 2 67 -128 1 1084 1228 104 6 11 chr9 65452538 65452555 -58623617 - B2_Mm1t SINE B2 -19 174 159 1 1084 198 0 0 0 chr9 65452555 65452577 -58623595 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1 1084 1228 104 6 11 chr9 65452577 65452734 -58623438 - B2_Mm1t SINE B2 -35 158 1 1 1084 1246 105 15 73 chr9 65452734 65452873 -58623299 + B2_Mm2 SINE B2 68 195 0 1 1084 762 162 7 51 chr9 65452924 65453061 -58623111 + B1_Mus1 SINE Alu 18 148 0 1 1084 465 260 12 67 chr9 65453084 65453103 -58623069 + ID_B1 SINE B4 67 222 -2 1 1084 763 168 27 20 chr9 65453103 65453249 -58622923 + B1_Mur3 SINE Alu 3 149 0 1 1084 356 261 0 14 chr9 65453942 65454012 -58622160 + B1_Mur4 SINE Alu 16 84 -66 1 1084 194 250 0 19 chr9 65455120 65455173 -58620999 - MIRc SINE MIR -139 129 78 1 1084 760 155 0 0 chr9 65455668 65455784 -58620388 - B1_Mus2 SINE Alu -5 142 27 1 1084 1161 50 0 21 chr9 65455797 65455941 -58620231 - B1_Mus1 SINE Alu -5 143 3 1 1084 2521 133 89 22 chr9 65456062 65456522 -58619650 - RMER1B Other Other -20 1046 556 1 1084 3411 120 56 100 chr9 65456525 65457165 -58619007 - RMER19B LTR ERVK -290 612 1 1 1084 1669 37 0 0 chr9 65457165 65457356 -58618816 + B2_Mm1a SINE B2 2 192 -1 1 1084 983 243 9 14 chr9 65457374 65457587 -58618585 - ID_B1 SINE B4 -2 222 11 1 1084 324 64 0 0 chr9 65457893 65457940 -58618232 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1084 204 216 0 0 chr9 65457946 65457997 -58618175 + CT-rich Low_complexity Low_complexity 3 53 0 1 1084 1089 90 28 0 chr9 65457997 65458141 -58618031 - B1_Mus1 SINE Alu 0 148 1 1 1084 580 208 78 140 chr9 65458141 65458320 -58617852 + B3A SINE B2 26 193 -5 1 1084 1172 37 0 0 chr9 65458329 65458464 -58617708 + B1_Mm SINE Alu 1 135 -12 1 1084 498 33 0 0 chr9 65458703 65458763 -58617409 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1084 348 89 0 0 chr9 65459100 65459145 -58617027 + B2_Mm2 SINE B2 1 45 -150 1 1084 1033 16 8 16 chr9 65459139 65459267 -58616905 + B1_Mm SINE Alu 21 147 0 1 1084 261 0 0 0 chr9 65459270 65459299 -58616873 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1084 185 222 0 0 chr9 65459365 65459401 -58616771 + MIR SINE MIR 116 151 -57 1 1084 332 300 134 18 chr9 65459461 65459573 -58616599 + PB1 SINE Alu 3 127 0 1 1084 1184 62 7 0 chr9 65459575 65459721 -58616451 + B1_Mus1 SINE Alu 2 148 0 1 1084 208 0 0 59 chr9 65459723 65459757 -58616415 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1084 277 290 0 16 chr9 65460099 65460162 -58616010 - ID4 SINE ID -3 80 19 1 1084 1278 82 44 0 chr9 65460232 65460414 -58615758 + B2_Mm1t SINE B2 4 193 0 1 1084 342 152 0 0 chr9 65460559 65460618 -58615554 + A-rich Low_complexity Low_complexity 1 59 0 1 1084 479 255 27 33 chr9 65460800 65460950 -58615222 - B1F2 SINE Alu 0 149 1 1 1084 512 200 92 84 chr9 65461334 65461476 -58614696 + ID_B1 SINE B4 82 224 0 1 1084 225 0 0 0 chr9 65461632 65461657 -58614515 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1084 1052 145 0 0 chr9 65461659 65461818 -58614354 - B2_Mm2 SINE B2 -35 160 2 1 1084 479 241 8 33 chr9 65461948 65462068 -58614104 + PB1D10 SINE Alu 1 117 0 1 1084 340 339 44 16 chr9 65462180 65462363 -58613809 + L1MEc LINE L1 114 301 -6099 1 1084 730 224 0 0 chr9 65462594 65462719 -58613453 + ID_B1 SINE B4 93 217 -7 1 1084 288 91 0 0 chr9 65462720 65462764 -58613408 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1084 585 275 8 0 chr9 65462765 65462885 -58613287 + B1F1 SINE Alu 8 128 -21 1 1084 843 215 65 25 chr9 65462969 65462986 -58613186 - B3 SINE B2 -8 208 185 1 1084 240 35 0 0 chr9 65462986 65463015 -58613157 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1 1084 843 215 65 25 chr9 65463015 65463197 -58612975 - B3 SINE B2 -32 184 3 1 1084 610 199 76 56 chr9 65463226 65463370 -58612802 + B1_Mur3 SINE Alu 1 147 -2 1 1084 1328 86 32 16 chr9 65463455 65463645 -58612527 - B2_Mm2 SINE B2 -1 194 2 1 1084 390 260 8 112 chr9 65463752 65463886 -58612286 + MER58B DNA MER1_type 179 298 -43 1 1084 1447 230 86 86 chr9 65463916 65464013 -58612159 + MTD LTR MaLR 1 67 -352 1 1084 1256 48 0 0 chr9 65464013 65464160 -58612012 - B1_Mus1 SINE Alu 0 148 2 1 1084 1447 230 86 86 chr9 65464160 65464480 -58611692 + MTD LTR MaLR 68 418 -1 1 1084 872 179 0 7 chr9 65464492 65464633 -58611539 + B1_Mus2 SINE Alu 1 140 -7 1 1084 575 221 0 28 chr9 65464711 65464818 -58611354 + B1_Mur4 SINE Alu 35 138 -12 1 1084 258 32 0 0 chr9 65464819 65464850 -58611322 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1084 274 140 37 49 chr9 65464869 65464955 -58611217 + PB1D9 SINE Alu 32 120 0 1 1084 499 301 21 0 chr9 65464967 65465110 -58611062 - RSINE1 SINE B4 -17 148 3 1 1084 494 278 0 9 chr9 65465227 65465336 -58610836 - PB1D10 SINE Alu -5 112 5 1 1084 245 145 0 47 chr9 65465419 65465488 -58610684 - B1_Mur4 SINE Alu 0 150 88 1 1084 186 267 114 38 chr9 65465623 65465728 -58610444 + L3 LINE CR1 826 938 -3551 1 1084 1052 86 7 7 chr9 65465950 65466086 -58610086 + B1_Mus1 SINE Alu 3 139 -9 1 1084 198 0 0 0 chr9 65466086 65466108 -58610064 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1 1084 512 253 68 55 chr9 65466341 65466504 -58609668 - RSINE1 SINE B4 0 165 1 1 1084 291 205 36 0 chr9 65466656 65466739 -58609433 - L1MB5 LINE L1 -228 5946 5861 1 1084 251 300 65 22 chr9 65466891 65466983 -58609189 - B3A SINE B2 -89 109 14 1 1084 372 197 0 53 chr9 65466909 65466984 -58609188 - ID4 SINE ID 0 83 13 1 1084 357 345 26 9 chr9 65467019 65467133 -58609039 - PB1D10 SINE Alu -1 116 1 1 1084 233 207 33 49 chr9 65467187 65467248 -58608924 - ID_B1 SINE B4 0 224 165 1 1084 259 281 52 10 chr9 65467940 65468038 -58608134 - MIRb SINE MIR -82 186 84 1 1084 949 52 0 0 chr9 65468101 65468216 -58607956 + B1_Mus1 SINE Alu 22 136 -12 1 1084 306 0 0 0 chr9 65468217 65468251 -58607921 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1084 641 152 9 37 chr9 65468277 65468386 -58607786 + B1_Mur3 SINE Alu 43 148 -1 1 1084 1615 37 0 16 chr9 65468389 65468582 -58607590 + B2_Mm1t SINE B2 1 190 -3 1 1084 198 0 0 0 chr9 65468624 65468646 -58607526 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1084 590 163 127 24 chr9 65468659 65468785 -58607387 + B1_Mur3 SINE Alu 1 139 -10 1 1084 414 0 0 0 chr9 65468785 65468831 -58607341 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1084 771 150 0 0 chr9 65469130 65469250 -58606922 + B3A SINE B2 1 120 -78 1 1084 837 163 0 39 chr9 65469947 65470100 -58606072 - B1_Mm SINE Alu 0 147 1 1 1084 570 275 0 35 chr9 65470194 65470337 -58605835 - MLT1A1 LTR MaLR -2 406 269 1 1084 253 243 41 41 chr9 65470463 65470536 -58605636 + PB1D10 SINE Alu 41 113 -4 1 1084 362 271 84 0 chr9 65470543 65470650 -58605522 + B4 SINE B4 59 174 -118 1 1084 716 203 6 92 chr9 65470980 65471018 -58605154 - B1F2 SINE Alu 0 149 123 1 1084 465 19 0 0 chr9 65471018 65471072 -58605100 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1084 716 203 6 92 chr9 65471072 65471196 -58604976 - B1F2 SINE Alu -27 122 1 1 1084 634 254 196 34 chr9 65471378 65471525 -58604647 - ID_B1 SINE B4 -5 219 46 1 1084 904 199 354 4 chr9 65471525 65471628 -58604544 - ORR1D1 LTR MaLR 0 374 229 1 1084 396 0 0 0 chr9 65471628 65471672 -58604500 + (CAGG)n Simple_repeat Simple_repeat 3 46 0 1 1084 904 199 354 4 chr9 65471672 65471845 -58604327 - ORR1D1 LTR MaLR -146 228 1 1 1084 634 254 196 34 chr9 65471845 65471876 -58604296 - ID SINE ID -179 45 12 1 1084 222 37 0 0 chr9 65472379 65472406 -58603766 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1 1084 1567 38 0 16 chr9 65472526 65472713 -58603459 - B2_Mm1a SINE B2 -9 184 1 1 1084 494 195 111 63 chr9 65472798 65472924 -58603248 - B1_Mur1 SINE Alu -1 148 17 1 1084 430 221 107 0 chr9 65472932 65473054 -58603118 - B4A SINE B4 -48 244 110 1 1084 222 37 0 0 chr9 65473416 65473443 -58602729 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1084 1189 62 0 0 chr9 65473443 65473587 -58602585 - B1_Mus2 SINE Alu 0 147 4 1 1084 626 175 143 0 chr9 65473701 65473827 -58602345 + B1_Mur3 SINE Alu 6 149 0 1 1084 498 215 130 8 chr9 65473872 65474003 -58602169 + B1F2 SINE Alu 2 148 -1 1 1084 189 0 0 0 chr9 65474662 65474683 -58601489 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1084 1168 56 28 0 chr9 65474683 65474826 -58601346 - B1_Mus1 SINE Alu 0 148 2 1 1084 380 217 75 28 chr9 65475117 65475276 -58600896 + B3 SINE B2 1 211 -5 1 1084 908 152 0 21 chr9 65475285 65475426 -58600746 - B1_Mur4 SINE Alu -3 147 10 1 1084 1090 98 0 20 chr9 65475439 65475585 -58600587 + B1_Mus2 SINE Alu 5 147 0 1 1084 222 118 0 0 chr9 65475586 65475620 -58600552 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1084 235 231 0 0 chr9 65475855 65475894 -58600278 + MIRm SINE MIR 114 152 -124 1 1084 1395 61 61 0 chr9 65475939 65476120 -58600052 + B2_Mm2 SINE B2 1 192 -3 1 1084 1169 69 0 6 chr9 65476199 65476360 -58599812 + (TTC)n Simple_repeat Simple_repeat 1 160 0 1 1084 401 21 0 0 chr9 65476372 65476419 -58599753 - B2_Mm2 SINE B2 -147 48 2 1 1084 183 339 0 17 chr9 65476741 65476801 -58599371 + L2b LINE L2 3316 3374 -1 1 1084 26 0 0 0 chr9 65477356 65477382 -58598790 + GC_rich Low_complexity Low_complexity 1 26 0 1 1084 221 208 34 27 chr9 65477629 65477710 -58598462 - MIR SINE MIR -109 159 78 1 1084 29 47 0 0 chr9 65478174 65478217 -58597955 + GC_rich Low_complexity Low_complexity 1 43 0 1 1084 49 76 0 0 chr9 65478262 65478367 -58597805 + GC_rich Low_complexity Low_complexity 1 105 0 1 1084 21 0 0 0 chr9 65478744 65478765 -58597407 + GC_rich Low_complexity Low_complexity 1 21 0 1 1084 313 310 40 0 chr9 65480484 65480584 -58595588 + U6 snRNA snRNA 1 104 -3 1 1084 418 294 91 98 chr9 65480597 65480740 -58595432 + RSINE1 SINE B4 3 144 -21 1 1084 330 212 15 29 chr9 65481473 65481541 -58594631 + PB1D10 SINE Alu 43 109 -8 1 1084 303 242 37 215 chr9 65481898 65482061 -58594111 - B1F1 SINE Alu -6 143 10 1 1084 235 247 26 13 chr9 65482072 65482150 -58594022 - L1MA10 LINE L1 -5 6329 6251 1 1084 242 315 0 92 chr9 65482166 65482264 -58593908 - BC1_Mm scRNA scRNA -56 96 8 1 1084 276 209 101 29 chr9 65482276 65482345 -58593827 - B1_Mus1 SINE Alu -49 99 26 1 1084 504 250 0 24 chr9 65482443 65482566 -58593606 - PB1D9 SINE Alu 0 120 1 1 1084 456 264 133 33 chr9 65482853 65483033 -58593139 - B3A SINE B2 0 198 1 1 1084 470 305 30 8 chr9 65483085 65483217 -58592955 + B1F SINE Alu 5 139 -10 1 1084 225 329 41 0 chr9 65483241 65483314 -58592858 + ID_B1 SINE B4 80 155 -69 1 1084 1810 165 66 66 chr9 65483326 65483360 -58592812 - ORR1C2 LTR MaLR -19 365 343 1 1084 207 0 0 0 chr9 65483360 65483383 -58592789 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1084 1021 67 0 56 chr9 65483385 65483527 -58592645 - B1_Mus1 SINE Alu -13 135 2 1 1084 1810 165 66 66 chr9 65483527 65483853 -58592319 - ORR1C2 LTR MaLR -42 342 2 1 1084 274 276 0 130 chr9 65483892 65484000 -58592172 + ID_B1 SINE B4 74 167 -57 1 1084 470 183 222 18 chr9 65483903 65484025 -58592147 + B1_Mur1 SINE Alu 2 147 -1 1 1084 489 206 128 71 chr9 65484643 65484784 -58591388 - B1_Mur2 SINE Alu 0 149 1 1 1084 1778 142 78 9 chr9 65485516 65485835 -58590337 + ORR1C2 LTR MaLR 44 384 0 1 1084 945 59 42 49 chr9 65485942 65486084 -58590088 - B1_Mus2 SINE Alu -6 141 1 1 1084 496 164 318 0 chr9 65487451 65487561 -58588611 - B1_Mus2 SINE Alu -1 146 2 1 1084 228 67 0 0 chr9 65487621 65487651 -58588521 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1084 394 216 181 16 chr9 65488282 65488409 -58587763 - B1_Mur1 SINE Alu -1 148 1 1 1084 347 200 0 198 chr9 65488429 65488535 -58587637 - B1F1 SINE Alu -64 85 1 1 1084 180 329 38 50 chr9 65488768 65488848 -58587324 + MIRm SINE MIR 76 154 -122 1 1084 307 236 42 0 chr9 65489133 65489205 -58586967 + ID4_ SINE ID 5 79 -4 1 1084 189 171 0 0 chr9 65489248 65489283 -58586889 + T-rich Low_complexity Low_complexity 1 35 0 1 1084 225 222 65 65 chr9 65489528 65489605 -58586567 - B4 SINE B4 -215 77 1 1 1084 214 259 11 66 chr9 65489829 65489920 -58586252 + B1_Mus2 SINE Alu 50 135 -12 1 1084 457 248 0 44 chr9 65490170 65490199 -58585973 + ID_B1 SINE B4 116 139 -85 1 1084 1490 140 188 20 chr9 65490199 65490550 -58585622 - RMER17C LTR ERVK 0 410 1 1 1084 457 248 0 44 chr9 65490550 65490634 -58585538 + ID_B1 SINE B4 140 223 -1 1 1084 1276 116 21 0 chr9 65490920 65491109 -58585063 - B2_Mm1t SINE B2 0 193 1 1 1084 25 0 0 0 chr9 65491109 65491134 -58585038 + AT_rich Low_complexity Low_complexity 1 25 0 1 1084 321 176 0 0 chr9 65491134 65491208 -58584964 + T-rich Low_complexity Low_complexity 1 74 0 1 1084 1146 95 0 0 chr9 65491211 65491359 -58584813 - B1_Mus1 SINE Alu 0 148 1 1 1084 881 209 118 21 chr9 65491379 65491565 -58584607 - B3 SINE B2 -11 205 2 1 1084 253 273 15 15 chr9 65491675 65491742 -58584430 + ID_B1 SINE B4 83 149 -75 1 1084 224 309 186 0 chr9 65491676 65491773 -58584399 + PB1D10 SINE Alu 3 117 0 1 1084 779 188 43 0 chr9 65491876 65492014 -58584158 + B1_Mur3 SINE Alu 6 149 0 1 1084 1437 64 5 16 chr9 65492037 65492228 -58583944 + B2_Mm2 SINE B2 1 189 -6 1 1084 417 306 13 33 chr9 65493410 65493562 -58582610 + B1F SINE Alu 1 149 0 1 1084 597 140 0 0 chr9 65493583 65493676 -58582496 - B1_Mus1 SINE Alu -55 93 1 1 1084 205 289 143 12 chr9 65494219 65494303 -58581869 + MIRm SINE MIR 17 111 -165 1 1084 848 164 28 7 chr9 65494340 65494481 -58581691 - B1_Mur4 SINE Alu -6 144 1 1 1084 446 306 102 40 chr9 65494482 65494659 -58581513 - B3 SINE B2 -1 215 28 1 1084 425 153 137 41 chr9 65494782 65494897 -58581275 + B1_Mur3 SINE Alu 1 148 0 1 1084 335 322 56 0 chr9 65495007 65495097 -58581075 + PB1D10 SINE Alu 18 112 -5 1 1084 301 232 290 10 chr9 65495121 65495221 -58580951 + B1_Mm SINE Alu 2 129 -18 1 1084 332 320 91 53 chr9 65495422 65495504 -58580668 + ID_B1 SINE B4 6 95 -129 1 1084 915 220 65 0 chr9 65495504 65495690 -58580482 + B3 SINE B2 1 198 -18 1 1084 207 0 0 0 chr9 65495691 65495714 -58580458 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1084 959 102 0 7 chr9 65495714 65495852 -58580320 - B1_Mus1 SINE Alu -10 138 2 1 1084 332 320 91 53 chr9 65495852 65495880 -58580292 + ID_B1 SINE B4 96 220 -4 1 1084 510 170 85 0 chr9 65495880 65495974 -58580198 + B1_Mur2 SINE Alu 47 148 -1 1 1084 413 231 32 42 chr9 65496073 65496168 -58580004 - ID_B1 SINE B4 -26 198 105 1 1084 553 209 43 0 chr9 65496194 65496309 -58579863 - PB1D9 SINE Alu 0 120 1 1 1084 221 317 0 0 chr9 65496566 65496626 -58579546 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1084 489 298 28 7 chr9 65496722 65496864 -58579308 - B4A SINE B4 -118 174 30 1 1084 282 294 51 68 chr9 65497325 65497442 -58578730 + MIRc SINE MIR 42 156 -112 1 1084 207 0 0 0 chr9 65497494 65497517 -58578655 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1084 302 67 22 0 chr9 65498159 65498204 -58577968 + (TCC)n Simple_repeat Simple_repeat 3 48 0 1 1084 223 263 0 123 chr9 65498242 65498307 -58577865 - ID4 SINE ID -4 79 23 1 1084 225 260 53 123 chr9 65498703 65498817 -58577355 + MLT1J2 LTR MaLR 187 292 -156 1 1084 296 274 0 0 chr9 65499636 65499698 -58576474 + B1F SINE Alu 10 71 -78 1 1084 1255 88 6 0 chr9 65499708 65499878 -58576294 - B2_Mm1a SINE B2 -22 171 1 1 1084 718 88 0 26 chr9 65499884 65500000 -58576172 - B2_Mm2 SINE B2 -9 186 74 1 1084 513 127 0 0 chr9 65500002 65500073 -58576099 - B2_Mm2 SINE B2 -124 71 1 1 1084 262 288 105 7 chr9 65500208 65500388 -58575784 + MIR SINE MIR 38 234 -28 2 1084 236 298 105 0 chr9 65500423 65500480 -58575692 - RSINE1 SINE B4 -30 135 73 3 1084 457 195 42 10 chr9 65500553 65500674 -58575498 - PB1D10 SINE Alu 0 127 1 4 1084 410 203 91 6 chr9 65500710 65500818 -58575354 - PB1D7 SINE Alu -21 127 18 5 1084 486 33 0 0 chr9 65501350 65501410 -58574762 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1084 329 258 169 0 chr9 65501501 65501590 -58574582 + MIR3 SINE MIR 57 160 -48 7 1084 219 234 35 115 chr9 65501728 65501815 -58574357 + MIR SINE MIR 44 123 -139 8 1084 1289 116 0 26 chr9 65501819 65502013 -58574159 - B2_Mm1t SINE B2 -4 189 1 9 1084 538 244 134 62 chr9 65502014 65502193 -58573979 - ID_B1 SINE B4 -32 192 1 1 1084 1247 48 0 0 chr9 65502228 65502374 -58573798 - B1_Mus2 SINE Alu -1 146 1 1 1084 1106 114 34 22 chr9 65502380 65502559 -58573613 - B2_Mm2 SINE B2 -14 181 1 1 1084 482 208 69 0 chr9 65502579 65502680 -58573492 - B1_Mus1 SINE Alu -9 139 32 1 1084 292 279 105 9 chr9 65502683 65502788 -58573384 - PB1D10 SINE Alu -2 115 1 1 1084 464 324 15 7 chr9 65503412 65503549 -58572623 + ID_B1 SINE B4 85 222 -2 1 1084 306 292 42 0 chr9 65503830 65503902 -58572270 - B1F1 SINE Alu -72 77 3 1 1084 348 24 0 0 chr9 65503915 65503956 -58572216 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 1084 1184 89 6 0 chr9 65503957 65504114 -58572058 - B2_Mm2 SINE B2 -37 158 1 1 1084 376 276 99 50 chr9 65504141 65504282 -58571890 + RSINE1 SINE B4 6 153 -12 1 1084 257 299 118 27 chr9 65504392 65504502 -58571670 - PB1D7 SINE Alu 0 120 1 2 1084 183 139 0 0 chr9 65504806 65504842 -58571330 + (CAT)n Simple_repeat Simple_repeat 2 37 0 2 1084 973 193 11 11 chr9 65506377 65506555 -58569617 + ID_B1 SINE B4 47 224 0 2 1084 478 259 144 48 chr9 65506563 65506709 -58569463 + RSINE1 SINE B4 4 163 -2 2 1084 263 215 101 16 chr9 65506741 65506837 -58569335 - MIRb SINE MIR -85 191 94 2 1084 629 186 135 205 chr9 65509889 65510143 -58566029 + MTD LTR MaLR 15 252 -127 2 1084 550 213 9 9 chr9 65510100 65510209 -58565963 - B1F2 SINE Alu -40 109 1 2 1084 366 264 116 41 chr9 65510209 65510246 -58565926 - B4 SINE B4 -94 198 42 2 1084 385 299 80 22 chr9 65510378 65510515 -58565657 + RSINE1 SINE B4 2 146 -19 2 1084 660 266 83 5 chr9 65510551 65510744 -58565428 + B4A SINE B4 8 215 -77 2 1084 312 247 71 61 chr9 65510721 65510820 -58565352 + B3A SINE B2 15 114 -84 3 1084 1213 49 0 7 chr9 65510878 65511023 -58565149 - B1_Mus2 SINE Alu -2 145 2 3 1084 604 230 82 44 chr9 65511061 65511220 -58564952 - B3 SINE B2 -4 212 48 3 1084 192 40 0 0 chr9 65511855 65511880 -58564292 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1084 451 246 87 9 chr9 65511888 65512003 -58564169 - ID_B1 SINE B4 -3 221 98 3 1084 1054 150 200 0 chr9 65512505 65512685 -58563487 + B3 SINE B2 1 216 0 3 1084 242 328 0 0 chr9 65512722 65512783 -58563389 + B4A SINE B4 90 150 -142 3 1084 432 267 19 0 chr9 65512732 65512837 -58563335 + B1F SINE Alu 15 121 -28 3 1084 241 185 293 79 chr9 65513459 65513623 -58562549 - Charlie8 DNA MER1_type -2157 271 73 3 1084 895 167 28 0 chr9 65513660 65513804 -58562368 + B1_Mur3 SINE Alu 1 148 -1 3 1084 556 286 24 0 chr9 65514113 65514239 -58561933 - ID_B1 SINE B4 -10 214 86 4 1084 492 193 193 0 chr9 65514261 65514375 -58561797 + B1_Mur2 SINE Alu 3 138 -11 4 1084 1371 42 0 23 chr9 65514400 65514412 -58561760 - B2_Mm1t SINE B2 -24 169 161 4 1084 261 0 0 0 chr9 65514412 65514441 -58561731 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 4 1084 1371 42 0 23 chr9 65514441 65514601 -58561571 - B2_Mm1t SINE B2 -33 160 1 4 1084 357 244 39 0 chr9 65514619 65514697 -58561475 - PB1D7 SINE Alu -39 81 1 4 1084 297 289 102 10 chr9 65514697 65514717 -58561455 - B4 SINE B4 -126 166 60 4 1084 1241 55 0 0 chr9 65515005 65515151 -58561021 - B1_Mm SINE Alu 0 147 2 4 1084 673 245 132 11 chr9 65515157 65515347 -58560825 - B3 SINE B2 0 216 4 4 1084 183 42 0 0 chr9 65515405 65515429 -58560743 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1084 243 88 0 0 chr9 65515754 65515788 -58560384 + (CAT)n Simple_repeat Simple_repeat 2 35 0 4 1084 643 296 7 28 chr9 65516003 65516177 -58559995 - ID_B1 SINE B4 -44 248 76 5 1084 1511 53 11 5 chr9 65516183 65516374 -58559798 - B2_Mm2 SINE B2 -2 193 2 5 1084 180 0 0 0 chr9 65516558 65516578 -58559594 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1084 1229 61 0 0 chr9 65516587 65516735 -58559437 - B1_Mus1 SINE Alu 0 148 1 5 1084 764 178 47 0 chr9 65516737 65516865 -58559307 - B1_Mus1 SINE Alu 0 148 15 5 1084 978 38 6 0 chr9 65516865 65516995 -58559177 + B1_Mus1 SINE Alu 1 138 -10 5 1084 261 0 0 0 chr9 65516995 65517024 -58559148 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1084 972 179 124 5 chr9 65517168 65517370 -58558802 + URR1A DNA MER1_type 1 226 0 5 1084 295 324 42 0 chr9 65517618 65517689 -58558483 - ID SINE ID -150 74 1 5 1084 1075 95 0 0 chr9 65517712 65517859 -58558313 - B1_Mus2 SINE Alu 0 147 1 5 1084 446 188 168 26 chr9 65517866 65517894 -58558278 - PB1D10 SINE Alu -4 143 102 5 1084 883 142 7 13 chr9 65517894 65518044 -58558128 - B1_Mur4 SINE Alu -1 149 1 6 1084 446 141 115 23 chr9 65518044 65518119 -58558053 - PB1D10 SINE Alu -11 106 22 5 1084 768 181 31 0 chr9 65518179 65518306 -58557866 - B1_Mur1 SINE Alu -14 135 5 6 1084 28 0 0 0 chr9 65518306 65518334 -58557838 + AT_rich Low_complexity Low_complexity 1 28 0 6 1084 684 234 35 0 chr9 65518334 65518479 -58557693 - B1_Mur4 SINE Alu 0 150 1 6 1084 1540 43 27 0 chr9 65518732 65518917 -58557255 - B2_Mm1t SINE B2 -2 191 2 6 1084 495 87 0 0 chr9 65519197 65519266 -58556906 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1084 288 364 34 8 chr9 65519973 65520092 -58556080 + PB1 SINE Alu 6 127 0 6 1084 276 323 92 51 chr9 65520097 65520195 -58555977 + ID_B1 SINE B4 89 190 -34 6 1084 864 169 7 26 chr9 65520210 65520362 -58555810 + B1_Mur3 SINE Alu 1 149 0 6 1084 1106 57 0 21 chr9 65520372 65520515 -58555657 + B1_Mus1 SINE Alu 9 148 0 6 1084 486 271 103 14 chr9 65520530 65520676 -58555496 + ID_B1 SINE B4 2 160 -64 7 1084 287 246 0 0 chr9 65521163 65521228 -58554944 - ID4 SINE ID -17 66 2 7 1084 351 0 0 0 chr9 65521365 65521404 -58554768 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1084 1119 73 0 0 chr9 65521404 65521540 -58554632 - B1_Mus2 SINE Alu -10 137 2 7 1084 376 234 16 112 chr9 65521612 65521626 -58554546 + MT2B LTR ERVL 152 153 -448 7 1084 770 169 15 8 chr9 65521626 65521757 -58554415 + B1_Mur4 SINE Alu 4 135 -15 7 1084 219 36 0 0 chr9 65521757 65521785 -58554387 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1084 540 286 106 42 chr9 65521824 65522061 -58554111 + B4 SINE B4 37 288 -4 7 1084 969 39 141 0 chr9 65522227 65522355 -58553817 - B1_Mm SINE Alu 0 147 2 7 1084 868 213 0 0 chr9 65522369 65522519 -58553653 - B1_Mur4 SINE Alu 0 150 1 7 1084 849 108 62 0 chr9 65522549 65522678 -58553494 - B1_Mus2 SINE Alu -9 138 2 8 1084 459 0 0 0 chr9 65523202 65523253 -58552919 + (TC)n Simple_repeat Simple_repeat 1 51 0 8 1084 527 268 0 58 chr9 65523271 65523417 -58552755 - B1_Mur1 SINE Alu -11 137 4 8 1084 455 238 97 60 chr9 65523773 65523907 -58552265 + ID_B1 SINE B4 84 222 -2 8 1084 720 223 41 50 chr9 65523928 65524125 -58552047 + B3 SINE B2 6 195 0 8 1084 205 174 13 104 chr9 65524592 65524669 -58551503 + C-rich Low_complexity Low_complexity 2 71 0 8 1084 269 256 75 32 chr9 65526125 65526218 -58549954 - MER5B DNA MER1_type -80 98 2 8 1084 676 191 0 64 chr9 65526318 65526458 -58549714 + B1_Mus1 SINE Alu 1 131 -17 8 1084 24 0 0 0 chr9 65526458 65526482 -58549690 + AT_rich Low_complexity Low_complexity 1 24 0 8 1084 195 308 0 30 chr9 65527048 65527115 -58549057 + MIR3 SINE MIR 122 186 -22 8 1084 472 235 135 100 chr9 65528355 65528512 -58547660 + B3 SINE B2 1 166 -29 9 1084 986 117 21 0 chr9 65528512 65528657 -58547515 + B1_Mur3 SINE Alu 1 148 -1 9 1084 352 235 135 100 chr9 65528657 65528669 -58547503 + B2_Mm2 SINE B2 167 176 -19 9 1084 656 208 54 39 chr9 65528678 65528808 -58547364 + B1_Mur1 SINE Alu 2 133 -16 9 1084 315 269 18 55 chr9 65529974 65530084 -58546088 - PB1D7 SINE Alu 0 120 15 9 1084 358 247 12 0 chr9 65530100 65530181 -58545991 - ID4 SINE ID 0 83 2 9 1084 547 170 10 39 chr9 65530214 65530318 -58545854 + ID_B1 SINE B4 87 187 -37 9 1084 434 250 35 35 chr9 65530318 65530330 -58545842 + B1F2 SINE Alu 6 121 -28 9 1084 22 35 0 0 chr9 65530359 65530388 -58545784 + AT_rich Low_complexity Low_complexity 1 29 0 9 1084 267 250 43 14 chr9 65530459 65530528 -58545644 - ID4_ SINE ID -11 72 2 9 1084 300 271 71 0 chr9 65530847 65530932 -58545240 - RSINE1 SINE B4 -64 101 11 9 1084 719 164 15 30 chr9 65531116 65531248 -58544924 + B1_Mur3 SINE Alu 1 130 -19 1 1084 879 164 7 0 chr9 65532879 65533025 -58543147 + B1_Mus1 SINE Alu 1 147 -1 1 1084 1211 61 0 0 chr9 65533270 65533417 -58542755 - B1_Mus2 SINE Alu 0 147 1 1 1084 1036 51 70 28 chr9 65533685 65533827 -58542345 + B1_Mus1 SINE Alu 1 148 0 1 1084 335 21 43 0 chr9 65533839 65533886 -58542286 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 1 1084 588 207 26 0 chr9 65534528 65534644 -58541528 + PB1D9 SINE Alu 2 120 0 1 1084 340 197 33 0 chr9 65534720 65534781 -58541391 - PB1D10 SINE Alu -27 90 28 1 1084 1473 68 26 0 chr9 65534873 65535063 -58541109 - B2_Mm2 SINE B2 0 195 1 1 1084 189 0 0 0 chr9 65535143 65535164 -58541008 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1084 1285 34 0 0 chr9 65535164 65535311 -58540861 - B1_Mus2 SINE Alu 0 147 1 1 1085 762 187 50 0 chr9 65536136 65536275 -58539897 - B1_Mur2 SINE Alu -2 147 2 1 1085 963 50 0 0 chr9 65538752 65538873 -58537299 - B1_Mus2 SINE Alu 0 147 27 1 1085 225 0 0 0 chr9 65539203 65539228 -58536944 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1085 221 185 0 69 chr9 65539465 65539523 -58536649 + GA-rich Low_complexity Low_complexity 4 57 0 1 1085 237 33 0 0 chr9 65540271 65540301 -58535871 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1085 259 194 48 0 chr9 65541303 65541365 -58534807 + GA-rich Low_complexity Low_complexity 1 65 0 1 1085 247 171 55 13 chr9 65543585 65543654 -58532518 + RSINE1 SINE B4 1 72 -220 1 1085 1331 242 35 11 chr9 65544277 65544561 -58531611 - B4 SINE B4 0 292 2 1 1085 994 17 0 0 chr9 65544632 65544750 -58531422 + B1_Mus1 SINE Alu 31 148 0 1 1085 233 242 38 63 chr9 65544634 65544793 -58531379 + ORR1B1-int LTR MaLR 679 833 -676 1 1085 254 289 102 10 chr9 65545812 65545910 -58530262 + PB1D10 SINE Alu 4 110 -7 1 1085 502 231 101 29 chr9 65545950 65546088 -58530084 + B1_Mur1 SINE Alu 2 149 0 1 1085 662 242 8 0 chr9 65546108 65546232 -58529940 + B1_Mm SINE Alu 2 126 -21 1 1085 690 209 38 67 chr9 65546243 65546458 -58529714 + B3A SINE B2 5 195 0 1 1085 319 198 159 23 chr9 65546631 65546719 -58529453 + PB1D10 SINE Alu 11 110 -7 1 1085 570 248 230 0 chr9 65546727 65546888 -58529284 + B3 SINE B2 2 199 -17 1 1085 812 289 83 0 chr9 65546902 65547144 -58529028 + B4A SINE B4 31 292 0 1 1085 291 220 33 99 chr9 65547152 65547273 -58528899 + PB1D9 SINE Alu 1 113 -7 1 1085 222 222 62 16 chr9 65547295 65547359 -58528813 + MIRb SINE MIR 199 265 -3 1 1085 834 161 35 14 chr9 65547725 65547870 -58528302 + B1_Mur1 SINE Alu 2 149 0 1 1085 279 0 0 0 chr9 65547895 65547926 -58528246 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 1 1085 222 284 115 57 chr9 65548185 65548342 -58527830 + L2b LINE L2 3205 3370 -5 1 1085 359 207 36 24 chr9 65549137 65549221 -58526951 + PB1D9 SINE Alu 33 117 -3 1 1085 902 230 23 0 chr9 65549385 65549559 -58526613 - B3A SINE B2 -20 178 1 1 1085 439 230 139 80 chr9 65549581 65549718 -58526454 - B1F SINE Alu -3 146 2 1 1085 202 286 20 20 chr9 65549779 65549829 -58526343 + MIR SINE MIR 24 73 -135 1 1085 189 0 0 0 chr9 65550425 65550446 -58525726 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1 1085 399 179 22 209 chr9 65552459 65552593 -58523579 - B1F SINE Alu 0 149 41 1 1085 862 94 158 0 chr9 65552596 65552723 -58523449 - B1_Mm SINE Alu 0 147 1 1 1085 1449 74 16 0 chr9 65552915 65552944 -58523228 - B2_Mm1t SINE B2 0 193 162 1 1085 420 37 0 0 chr9 65552944 65552998 -58523174 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1 1085 1449 74 16 0 chr9 65552998 65553157 -58523015 - B2_Mm1t SINE B2 -32 161 3 1 1085 433 248 86 0 chr9 65553262 65553367 -58522805 - ID_B1 SINE B4 -8 216 103 1 1085 264 312 61 30 chr9 65553279 65553411 -58522761 + YREP_Mm Unknown Unknown 204 339 -1473 1 1085 571 275 7 40 chr9 65553430 65553578 -58522594 + B1F SINE Alu 2 144 -5 1 1085 879 143 17 6 chr9 65553581 65553757 -58522415 + GA-rich Low_complexity Low_complexity 1 178 0 1 1085 740 203 191 11 chr9 65554201 65554390 -58521782 - ID_B1 SINE B4 0 224 2 1 1085 621 217 50 7 chr9 65554396 65554535 -58521637 - B1F1 SINE Alu -4 145 1 1 1085 709 262 58 6 chr9 65554695 65554868 -58521304 - B3A SINE B2 -16 182 1 1 1085 762 288 15 0 chr9 65554902 65555107 -58521065 + ID_B1 SINE B4 1 208 -16 1 1085 483 210 108 39 chr9 65555199 65555328 -58520844 + B1_Mus2 SINE Alu 3 140 -7 1 1085 213 273 18 0 chr9 65555361 65555416 -58520756 + ID4_ SINE ID 4 59 -24 1 1085 234 0 0 0 chr9 65555443 65555469 -58520703 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 1 1085 351 341 0 0 chr9 65555581 65555669 -58520503 - RSINE1 SINE B4 -25 140 53 1 1085 224 91 0 0 chr9 65555819 65555852 -58520320 - B3 SINE B2 -169 47 15 1 1085 385 279 143 71 chr9 65556003 65556178 -58519994 - ID_B1 SINE B4 -46 246 60 1 1085 233 261 0 21 chr9 65556232 65556279 -58519893 + PB1D9 SINE Alu 1 46 -74 1 1085 818 235 0 18 chr9 65556345 65556510 -58519662 + RSINE1 SINE B4 4 165 0 1 1085 1253 27 0 0 chr9 65557425 65557571 -58518601 - B1_Mus2 SINE Alu 0 147 2 1 1085 683 211 174 22 chr9 65557779 65557963 -58518209 - B3 SINE B2 0 216 5 1 1085 572 148 93 0 chr9 65557989 65558097 -58518075 - PB1D9 SINE Alu 0 120 3 1 1085 261 327 28 46 chr9 65558151 65558260 -58517912 - B4A SINE B4 0 292 186 1 1085 520 202 19 28 chr9 65558446 65558553 -58517619 - PB1D9 SINE Alu -14 106 1 1 1085 1037 134 37 16 chr9 65559088 65559278 -58516894 + B2_Mm2 SINE B2 2 195 0 1 1085 452 216 5 82 chr9 65559309 65559440 -58516732 + PB1 SINE Alu 2 126 -1 1 1085 1245 34 0 0 chr9 65559610 65559756 -58516416 - B1_Mus2 SINE Alu 0 147 2 1 1085 528 97 96 10 chr9 65559982 65560086 -58516086 - PB1D9 SINE Alu -2 118 6 1 1085 324 283 161 75 chr9 65560092 65560142 -58516030 - B3 SINE B2 0 216 154 1 1085 555 16 0 0 chr9 65560142 65560206 -58515966 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1085 324 283 161 75 chr9 65560206 65560354 -58515818 - B3 SINE B2 -63 153 1 1 1085 3397 85 4 35 chr9 65560703 65561189 -58514983 + MT2C_Mm LTR ERVL 1 471 -4 1 1085 485 202 115 0 chr9 65561194 65561298 -58514874 - ID_B1 SINE B4 -28 196 81 1 1085 404 82 16 0 chr9 65561302 65561363 -58514809 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1085 254 263 25 127 chr9 65561567 65561724 -58514448 + B3A SINE B2 3 143 -55 1 1085 573 236 154 28 chr9 65561597 65561811 -58514361 + B4A SINE B4 30 270 -22 1 1085 474 280 8 16 chr9 65562169 65562296 -58513876 + RSINE1 SINE B4 4 129 -36 1 1085 1139 71 133 23 chr9 65562542 65562715 -58513457 - B2_Mm1t SINE B2 -1 192 1 1 1085 474 277 44 37 chr9 65562733 65562868 -58513304 - RSINE1 SINE B4 -2 163 28 1 1085 597 212 6 104 chr9 65563192 65563355 -58512817 - B1_Mur2 SINE Alu -1 148 2 1 1085 228 393 0 0 chr9 65563690 65563779 -58512393 + ID_B1 SINE B4 121 209 -15 1 1085 353 225 14 130 chr9 65563738 65563876 -58512296 + MT2B LTR ERVL 143 264 -337 1 1085 925 104 30 0 chr9 65563777 65563911 -58512261 + B1_Mur4 SINE Alu 13 150 0 1 1085 257 51 32 48 chr9 65563911 65563973 -58512199 + (CAAAAA)n Simple_repeat Simple_repeat 6 66 0 1 1085 295 211 153 31 chr9 65564088 65564175 -58511997 + PB1D10 SINE Alu 8 109 -8 1 1085 204 40 0 0 chr9 65564175 65564200 -58511972 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1 1085 315 331 125 0 chr9 65564218 65564354 -58511818 + RSINE1 SINE B4 4 156 -9 1 1085 372 301 22 93 chr9 65564377 65564444 -58511728 + ID SINE ID 26 79 -145 1 1085 752 172 0 23 chr9 65564444 65564575 -58511597 + B1_Mur3 SINE Alu 2 129 -20 1 1085 471 299 39 13 chr9 65564589 65564745 -58511427 - B3 SINE B2 -56 160 1 1 1085 22 0 0 0 chr9 65564811 65564833 -58511339 + AT_rich Low_complexity Low_complexity 1 22 0 1 1085 1206 55 0 7 chr9 65564833 65564981 -58511191 - B1_Mus2 SINE Alu 0 147 1 1 1085 1003 172 102 51 chr9 65565015 65565230 -58510942 + URR1A DNA MER1_type 1 226 0 1 1085 1022 93 0 28 chr9 65565311 65565455 -58510717 + B1_Mus1 SINE Alu 1 140 -8 1 1085 240 35 0 0 chr9 65565456 65565485 -58510687 + (CCAA)n Simple_repeat Simple_repeat 2 30 0 1 1085 344 225 66 22 chr9 65565677 65565768 -58510404 + ID_B1 SINE B4 130 224 0 1 1085 183 42 0 0 chr9 65566387 65566411 -58509761 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 1 1085 1212 48 7 0 chr9 65566411 65566557 -58509615 - B1_Mus2 SINE Alu 0 147 1 1 1085 441 286 8 0 chr9 65566851 65566970 -58509202 - PB1D7 SINE Alu 0 120 1 1 1085 22 0 0 0 chr9 65566970 65566992 -58509180 + AT_rich Low_complexity Low_complexity 1 22 0 1 1085 573 15 0 0 chr9 65567155 65567221 -58508951 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1085 556 270 16 53 chr9 65567394 65567582 -58508590 - B3 SINE B2 0 216 36 1 1085 345 47 0 0 chr9 65567647 65567690 -58508482 + (AGATG)n Simple_repeat Simple_repeat 4 46 0 1 1085 327 256 126 16 chr9 65568041 65568168 -58508004 - B1F SINE Alu -8 141 1 2 1085 685 268 25 121 chr9 65568521 65568801 -58507371 - B4 SINE B4 0 292 40 2 1085 227 169 148 33 chr9 65569684 65569745 -58506427 + MLT1B LTR MaLR 1 68 -322 2 1085 885 289 140 29 chr9 65570055 65570928 -58505244 + L1ME3A LINE L1 4557 5528 -634 2 1085 585 100 70 0 chr9 65570937 65571037 -58505135 + B1_Mus2 SINE Alu 32 138 -9 2 1085 387 0 0 0 chr9 65571093 65571136 -58505036 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1085 445 236 47 0 chr9 65571316 65571422 -58504750 + PB1D9 SINE Alu 2 112 -8 2 1085 264 240 123 39 chr9 65571429 65571559 -58504613 + L1ME3A LINE L1 5831 5971 -202 2 1085 260 104 0 83 chr9 65572162 65572246 -58503926 + A-rich Low_complexity Low_complexity 2 78 0 2 1085 271 254 0 53 chr9 65572757 65572832 -58503340 + G-rich Low_complexity Low_complexity 1 71 0 2 1085 573 103 6 39 chr9 65573464 65573578 -58502594 - B2_Mm2 SINE B2 -82 116 1 2 1085 225 94 0 0 chr9 65573908 65573940 -58502232 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1085 332 226 234 0 chr9 65574647 65574771 -58501401 - RSINE1 SINE B4 -9 156 4 2 1085 432 0 0 0 chr9 65574819 65574867 -58501305 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1085 247 345 12 12 chr9 65574911 65574996 -58501176 - PB1D10 SINE Alu -10 107 23 2 1085 1214 41 7 0 chr9 65575058 65575204 -58500968 - B1_Mm SINE Alu 0 147 1 2 1085 720 123 115 0 chr9 65575257 65575379 -58500793 - B2_Mm2 SINE B2 -59 136 1 2 1085 733 230 112 5 chr9 65575616 65575804 -58500368 + B3 SINE B2 1 208 -8 2 1085 890 266 130 42 chr9 65576005 65576335 -58499837 + ORR1E LTR MaLR 1 359 0 2 1085 240 214 71 0 chr9 65576539 65576595 -58499577 + B1F2 SINE Alu 1 60 -89 2 1085 396 324 0 65 chr9 65576599 65576715 -58499457 + ID_B1 SINE B4 70 181 -43 2 1085 453 50 0 0 chr9 65576715 65576775 -58499397 + (CCAA)n Simple_repeat Simple_repeat 2 61 0 2 1085 396 324 0 65 chr9 65576775 65576813 -58499359 + ID_B1 SINE B4 182 214 -10 2 1085 1221 54 0 0 chr9 65576956 65577103 -58499069 + B1_Mus2 SINE Alu 1 147 0 2 1085 1119 108 72 0 chr9 65577122 65577289 -58498883 - B2_Mm2 SINE B2 -14 181 3 2 1085 360 217 0 0 chr9 65577327 65577396 -58498776 - B1_Mus2 SINE Alu -68 79 11 2 1085 557 258 8 8 chr9 65577794 65577919 -58498253 + ID_B1 SINE B4 87 211 -13 2 1085 549 154 0 0 chr9 65578140 65578231 -58497941 + B3 SINE B2 24 114 -102 2 1085 204 125 0 0 chr9 65579166 65579198 -58496974 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 2 1085 346 169 12 61 chr9 65579342 65579424 -58496748 - PB1D7 SINE Alu 0 120 43 2 1085 477 174 0 21 chr9 65579438 65579532 -58496640 - B1_Mur1 SINE Alu -16 133 42 2 1085 214 174 0 0 chr9 65579568 65579614 -58496558 + A-rich Low_complexity Low_complexity 5 50 0 2 1085 1406 70 16 5 chr9 65580119 65580306 -58495866 - B2_Mm2 SINE B2 -3 192 4 2 1085 21 36 0 0 chr9 65580311 65580339 -58495833 + AT_rich Low_complexity Low_complexity 1 28 0 2 1085 322 290 28 0 chr9 65580399 65580506 -58495666 - B3A SINE B2 -88 110 1 2 1085 627 219 110 22 chr9 65580586 65580768 -58495404 - B3A SINE B2 0 198 1 2 1085 530 213 0 36 chr9 65581555 65581667 -58494505 + PB1D9 SINE Alu 1 108 -12 2 1085 369 0 0 0 chr9 65581672 65581713 -58494459 + (CCAA)n Simple_repeat Simple_repeat 2 42 0 2 1085 844 290 47 36 chr9 65581724 65582003 -58494169 + B4A SINE B4 1 282 -10 2 1085 405 275 8 84 chr9 65582296 65582415 -58493757 + PB1D7 SINE Alu 1 110 -10 2 1085 834 186 7 0 chr9 65582796 65582941 -58493231 - B1_Mus2 SINE Alu -1 146 1 2 1085 926 124 163 0 chr9 65582961 65583114 -58493058 + B2_Mm1t SINE B2 2 179 -14 2 1085 328 164 0 0 chr9 65583157 65583212 -58492960 + B2_Mm2 SINE B2 47 101 -94 2 1085 386 295 14 70 chr9 65583307 65583449 -58492723 - B1F SINE Alu -12 137 4 2 1085 858 259 5 21 chr9 65583479 65583672 -58492500 - ID_B1 SINE B4 -31 193 4 2 1085 631 117 192 0 chr9 65583988 65584108 -58492064 + B1_Mus1 SINE Alu 6 148 0 2 1085 493 279 77 11 chr9 65584841 65585022 -58491150 + B3A SINE B2 3 195 -3 2 1085 1216 54 0 0 chr9 65585032 65585180 -58490992 + B1_Mus1 SINE Alu 1 148 0 2 1085 222 300 27 54 chr9 65585301 65585375 -58490797 + B1_Mus1 SINE Alu 7 78 -70 2 1085 243 312 16 0 chr9 65585312 65585376 -58490796 + ID_B1 SINE B4 94 158 -66 2 1085 519 66 0 0 chr9 65585445 65585521 -58490651 + (CCAA)n Simple_repeat Simple_repeat 4 79 0 2 1085 289 161 94 0 chr9 65585697 65585778 -58490394 - Lx6 LINE L1 -3 7457 7388 2 1085 377 288 0 46 chr9 65585915 65586046 -58490126 - B1F2 SINE Alu -1 148 24 2 1085 583 257 6 50 chr9 65586148 65586308 -58489864 + RSINE1 SINE B4 11 163 -2 2 1085 1447 238 31 11 chr9 65586375 65586728 -58489444 + ORR1D2 LTR MaLR 1 360 -10 2 1085 321 263 71 31 chr9 65586833 65586931 -58489241 - PB1 SINE Alu -20 107 6 2 1085 581 271 0 8 chr9 65586959 65587082 -58489090 - RSINE1 SINE B4 -40 125 4 2 1085 1426 80 21 0 chr9 65587512 65587700 -58488472 - B2_Mm2 SINE B2 -3 192 1 2 1085 281 339 44 66 chr9 65587743 65587772 -58488400 - B1F1 SINE Alu -7 142 114 2 1085 1197 94 78 0 chr9 65587772 65587952 -58488220 - B2_Mm2 SINE B2 -1 194 1 2 1085 281 339 44 66 chr9 65587952 65588058 -58488114 - B1F1 SINE Alu -36 113 10 2 1085 282 220 0 0 chr9 65588302 65588361 -58487811 + B3 SINE B2 33 91 -125 2 1085 195 42 0 0 chr9 65588364 65588388 -58487784 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1085 1187 49 0 0 chr9 65588391 65588534 -58487638 - B1_Mus1 SINE Alu -3 145 3 2 1085 192 232 54 0 chr9 65589001 65589057 -58487115 - MIRb SINE MIR -32 236 178 2 1085 1087 96 7 0 chr9 65589067 65589213 -58486959 + B1_Mus2 SINE Alu 1 147 0 2 1085 234 308 31 52 chr9 65589274 65589339 -58486833 - B1F SINE Alu -41 108 41 2 1085 300 53 0 0 chr9 65589339 65589377 -58486795 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 1085 234 308 31 52 chr9 65589386 65589407 -58486765 - B1F SINE Alu -109 40 15 2 1085 298 68 0 64 chr9 65589401 65589448 -58486724 - B2_Mm2 SINE B2 -150 45 2 2 1085 502 214 68 0 chr9 65589449 65589552 -58486620 - ID_B1 SINE B4 -90 134 25 2 1085 214 333 0 0 chr9 65589506 65589560 -58486612 - ID4_ SINE ID -14 69 16 2 1085 234 128 0 0 chr9 65589730 65589769 -58486403 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1085 1219 41 14 0 chr9 65589771 65589916 -58486256 - B1_Mm SINE Alu 0 147 1 2 1085 1096 79 0 0 chr9 65589969 65590108 -58486064 - B1_Mus1 SINE Alu -9 139 1 2 1085 22 35 0 0 chr9 65590334 65590363 -58485809 + AT_rich Low_complexity Low_complexity 1 29 0 2 1085 226 258 0 46 chr9 65590418 65590483 -58485689 + ID_B1 SINE B4 155 216 -8 2 1085 239 269 183 0 chr9 65590544 65590637 -58485535 + PB1D10 SINE Alu 4 113 -4 2 1085 521 241 30 0 chr9 65590721 65590854 -58485318 - ID_B1 SINE B4 -19 205 69 2 1085 335 221 221 0 chr9 65591247 65591351 -58484821 + B1F2 SINE Alu 2 128 -21 2 1085 678 204 14 14 chr9 65591456 65591595 -58484577 - B1_Mur2 SINE Alu -10 139 1 2 1085 202 216 0 0 chr9 65591667 65591704 -58484468 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 2 1085 308 359 35 0 chr9 65591744 65591886 -58484286 - L2b LINE L2 -218 3157 3011 2 1085 237 332 54 8 chr9 65593085 65593217 -58482955 - L2b LINE L2 -258 3168 3028 2 1085 299 330 78 0 chr9 65593313 65593416 -58482756 + PB1D10 SINE Alu 5 115 -2 2 1085 406 318 58 13 chr9 65593416 65593572 -58482600 + RSINE1 SINE B4 1 163 -2 2 1085 186 43 0 0 chr9 65593576 65593599 -58482573 + (CAAG)n Simple_repeat Simple_repeat 1 23 0 2 1085 239 322 45 11 chr9 65593695 65593783 -58482389 + PB1D10 SINE Alu 8 98 -19 2 1085 408 314 78 70 chr9 65593860 65594144 -58482028 + B4 SINE B4 2 287 -5 2 1085 363 23 0 0 chr9 65594417 65594461 -58481711 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1085 415 284 0 9 chr9 65594620 65594730 -58481442 - PB1D7 SINE Alu -6 114 6 2 1085 1282 91 32 21 chr9 65594760 65594950 -58481222 - B2_Mm1a SINE B2 -1 192 1 2 1085 272 163 0 0 chr9 65595003 65595024 -58481148 + T-rich Low_complexity Low_complexity 29 49 0 2 1085 1253 41 0 0 chr9 65595024 65595171 -58481001 - B1_Mus2 SINE Alu 0 147 1 2 1085 272 163 0 0 chr9 65595171 65595198 -58480974 + T-rich Low_complexity Low_complexity 2 28 0 2 1085 258 276 145 0 chr9 65595361 65595437 -58480735 - PB1D10 SINE Alu -8 119 33 2 1085 24 0 0 0 chr9 65595615 65595639 -58480533 + AT_rich Low_complexity Low_complexity 1 24 0 2 1085 208 309 125 18 chr9 65595772 65595940 -58480232 + MIRb SINE MIR 51 236 -32 2 1085 523 198 182 0 chr9 65595994 65596115 -58480057 - B1F1 SINE Alu 0 149 7 2 1085 406 260 10 0 chr9 65596140 65596240 -58479932 + RSINE1 SINE B4 7 107 -58 2 1085 265 284 71 27 chr9 65596452 65596564 -58479608 - B1F SINE Alu -9 140 24 2 1085 231 36 0 0 chr9 65597169 65597197 -58478975 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1085 248 0 0 30 chr9 65597197 65597230 -58478942 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 2 1085 234 370 7 36 chr9 65597258 65597398 -58478774 + RSINE1 SINE B4 18 153 -12 2 1085 491 202 0 0 chr9 65597737 65597767 -58478405 + B1_Mus2 SINE Alu 9 102 -45 3 1085 263 221 14 68 chr9 65597767 65597831 -58478341 + RLTR25B LTR ERVK 440 502 -526 3 1085 973 82 36 15 chr9 65597831 65597968 -58478204 + B1_Mus1 SINE Alu 1 140 -8 3 1085 219 103 0 0 chr9 65597968 65598007 -58478165 + (CAA)n Simple_repeat Simple_repeat 2 40 0 3 1085 873 189 0 0 chr9 65598032 65598180 -58477992 - B1_Mur4 SINE Alu -1 149 2 3 1085 3097 147 42 18 chr9 65598570 65599074 -58477098 - RMER1B Other Other 0 1066 551 3 1085 365 242 207 18 chr9 65599075 65599109 -58477063 - B4 SINE B4 -94 198 126 3 1085 534 92 0 0 chr9 65599109 65599185 -58476987 - B1_Mus2 SINE Alu -70 77 2 3 1085 365 242 207 18 chr9 65599185 65599239 -58476933 - B4 SINE B4 -94 125 4 3 1085 946 138 38 22 chr9 65599295 65599480 -58476692 + B2_Mm2 SINE B2 2 189 -6 3 1085 619 171 0 0 chr9 65599563 65599674 -58476498 - PB1D9 SINE Alu 0 120 10 3 1085 300 294 82 23 chr9 65599712 65599901 -58476271 - MTD LTR MaLR -183 196 28 3 1085 830 150 13 33 chr9 65600375 65600527 -58475645 + B1_Mur3 SINE Alu 1 149 0 3 1085 509 276 64 39 chr9 65600545 65600749 -58475423 - B3 SINE B2 -3 213 5 3 1085 233 309 18 0 chr9 65600791 65600846 -58475326 - RSINE1 SINE B4 -14 151 96 3 1085 946 92 0 14 chr9 65600868 65601012 -58475160 - B1_Mur4 SINE Alu 0 150 9 3 1085 400 291 0 18 chr9 65601045 65601157 -58475015 + PB1 SINE Alu 1 110 -17 3 1085 291 303 0 0 chr9 65601210 65601286 -58474886 + ID_B1 SINE B4 76 151 -73 3 1085 574 182 88 29 chr9 65601294 65601430 -58474742 + RSINE1 SINE B4 3 146 -19 3 1085 254 244 223 6 chr9 65601522 65601679 -58474493 - L1M5 LINE L1 -1678 4468 4278 3 1085 378 0 0 0 chr9 65602038 65602080 -58474092 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 3 1085 480 45 0 15 chr9 65602116 65602229 -58473943 - L1Md_F2 LINE L1 0 6582 6495 3 1085 229 230 99 106 chr9 65602245 65602386 -58473786 + MER96B DNA hAT 18 157 -260 3 1085 1380 102 16 0 chr9 65602391 65602578 -58473594 + B2_Mm2 SINE B2 2 191 -4 3 1085 30 0 0 0 chr9 65602639 65602669 -58473503 + AT_rich Low_complexity Low_complexity 1 30 0 3 1085 279 237 13 26 chr9 65602670 65602748 -58473424 + ID_B1 SINE B4 81 157 -67 3 1085 278 250 152 9 chr9 65602671 65602776 -58473396 + PB1D9 SINE Alu 1 120 0 3 1085 316 152 277 20 chr9 65602988 65603089 -58473083 + B1_Mur1 SINE Alu 23 149 0 3 1085 1030 197 9 49 chr9 65603091 65603315 -58472857 - B3 SINE B2 0 216 2 3 1085 414 0 0 0 chr9 65603363 65603409 -58472763 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1085 534 57 0 0 chr9 65603412 65603482 -58472690 + (GGGGA)n Simple_repeat Simple_repeat 1 70 0 3 1085 220 284 176 0 chr9 65604727 65604801 -58471371 + PB1D10 SINE Alu 3 89 -28 3 1085 410 283 103 34 chr9 65605305 65605422 -58470750 - RSINE1 SINE B4 -39 126 2 3 1085 1450 65 11 11 chr9 65605428 65605616 -58470556 - B2_Mm1t SINE B2 -5 188 1 3 1085 319 122 79 4 chr9 65606040 65606118 -58470054 - B1_Mur2 SINE Alu -32 117 26 3 1085 242 227 76 0 chr9 65606346 65606412 -58469760 + MIR SINE MIR 102 172 -90 3 1085 236 182 0 35 chr9 65606505 65606562 -58469610 + L1ME2z LINE L1 6388 6442 -2 3 1085 920 221 43 29 chr9 65606665 65606875 -58469297 + B3 SINE B2 1 213 -3 3 1085 452 160 0 0 chr9 65606934 65607009 -58469163 + B3 SINE B2 1 75 -141 3 1085 294 238 8 144 chr9 65607622 65607740 -58468432 + PB1D7 SINE Alu 1 102 -18 3 1085 756 158 74 15 chr9 65607759 65607894 -58468278 + B1_Mus1 SINE Alu 5 147 -1 3 1085 321 26 0 0 chr9 65608726 65608764 -58467408 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1085 405 269 66 16 chr9 65609633 65609754 -58466418 - B4 SINE B4 -164 128 2 3 1085 527 291 8 0 chr9 65609977 65610111 -58466061 + ID_B1 SINE B4 4 138 -86 3 1085 287 290 101 0 chr9 65610315 65610414 -58465758 + PB1D7 SINE Alu 3 118 -2 3 1085 844 254 9 28 chr9 65610477 65610692 -58465480 - B3 SINE B2 -5 211 1 3 1085 318 87 0 0 chr9 65611292 65611338 -58464834 - L2b LINE L2 0 3375 3330 3 1085 1033 129 73 34 chr9 65611500 65611686 -58464486 - B2_Mm2 SINE B2 -1 194 2 3 1085 361 274 87 10 chr9 65611987 65612090 -58464082 - B3A SINE B2 -6 192 82 3 1085 203 156 0 0 chr9 65612371 65612403 -58463769 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 3 1085 207 0 0 0 chr9 65612811 65612834 -58463338 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1085 584 268 91 21 chr9 65613133 65613320 -58462852 - RMER30 DNA MER1_type -1 201 2 3 1085 719 257 127 59 chr9 65613486 65613676 -58462496 + L1ME2 LINE L1 5378 5588 -745 3 1085 1524 78 5 5 chr9 65613676 65613868 -58462304 - B2_Mm2 SINE B2 -2 193 2 3 1085 596 176 0 0 chr9 65613868 65613959 -58462213 - 4.5SRNA scRNA scRNA -3 91 1 3 1085 719 247 129 55 chr9 65613959 65614134 -58462038 + L1ME2 LINE L1 5589 5765 -399 3 1085 589 278 83 45 chr9 65614160 65614450 -58461722 + L1ME2 LINE L1 5842 6142 -22 3 1085 684 278 149 0 chr9 65614633 65614827 -58461345 - ID_B1 SINE B4 0 224 2 3 1085 361 266 55 24 chr9 65615225 65615352 -58460820 + B1F SINE Alu 4 134 -15 3 1085 1199 82 17 23 chr9 65615690 65615864 -58460308 - B2_Mm2 SINE B2 -14 181 9 3 1085 496 243 64 26 chr9 65615866 65616022 -58460150 - Lx8 LINE L1 -133 7340 7179 3 1085 271 308 89 45 chr9 65616110 65616222 -58459950 - PB1D10 SINE Alu 0 117 1 3 1085 441 286 107 68 chr9 65616255 65616461 -58459711 + ID_B1 SINE B4 3 216 -8 3 1085 512 169 176 56 chr9 65616613 65616738 -58459434 + B1_Mm SINE Alu 7 146 -1 3 1085 276 136 91 0 chr9 65616745 65616789 -58459383 + PB1D9 SINE Alu 20 67 -53 3 1085 282 319 0 0 chr9 65616893 65616962 -58459210 + RSINE1 SINE B4 91 159 -6 3 1085 252 0 0 0 chr9 65616981 65617009 -58459163 + (CATG)n Simple_repeat Simple_repeat 1 28 0 3 1085 366 23 0 0 chr9 65617009 65617052 -58459120 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1085 223 256 35 58 chr9 65617143 65617230 -58458942 + B3A SINE B2 16 100 -98 3 1085 708 202 15 4 chr9 65617445 65617580 -58458592 + B1_Mur2 SINE Alu 5 135 -14 3 1085 200 143 95 0 chr9 65617778 65617820 -58458352 + GA-rich Low_complexity Low_complexity 3 48 0 3 1085 700 304 126 52 chr9 65618314 65618758 -58457414 + HAL1 LINE L1 421 897 -1610 3 1085 707 262 30 70 chr9 65619037 65619267 -58456905 + ID_B1 SINE B4 4 224 0 3 1085 931 197 5 53 chr9 65619369 65619557 -58456615 + B3 SINE B2 24 202 -14 3 1085 1266 61 0 0 chr9 65619695 65619842 -58456330 + B1_Mus1 SINE Alu 1 147 -1 3 1085 267 191 0 0 chr9 65619860 65619928 -58456244 + A-rich Low_complexity Low_complexity 1 68 0 3 1085 221 0 35 0 chr9 65620042 65620071 -58456101 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1085 501 217 51 0 chr9 65620076 65620195 -58455977 - B1F SINE Alu -11 138 13 3 1085 280 260 138 103 chr9 65620289 65620405 -58455767 + PB1D7 SINE Alu 1 120 0 3 1085 296 276 84 19 chr9 65620781 65620888 -58455284 + RSINE1 SINE B4 3 116 -49 3 1085 1077 131 22 49 chr9 65621014 65621199 -58454973 - B2_Mm2 SINE B2 -14 181 2 3 1085 624 259 30 0 chr9 65621264 65621399 -58454773 + B1_Mur1 SINE Alu 6 144 -5 3 1085 442 202 120 0 chr9 65621410 65621528 -58454644 + B1_Mur1 SINE Alu 2 149 0 3 1085 23 0 0 0 chr9 65621530 65621553 -58454619 + AT_rich Low_complexity Low_complexity 1 23 0 3 1085 798 199 186 6 chr9 65621809 65621986 -58454186 - B3 SINE B2 -7 209 1 3 1085 1465 95 5 0 chr9 65621986 65622176 -58453996 - B2_Mm1t SINE B2 -2 191 1 3 1085 299 253 11 44 chr9 65622504 65622595 -58453577 - PB1D7 SINE Alu -17 103 16 3 1085 903 59 9 8 chr9 65622632 65622779 -58453393 - B1_Mm SINE Alu 0 149 2 3 1085 462 235 120 17 chr9 65623247 65623364 -58452808 + B1F SINE Alu 21 149 0 3 1085 522 236 24 8 chr9 65623446 65623570 -58452602 + ID_B1 SINE B4 99 224 0 3 1085 333 0 0 0 chr9 65623755 65623792 -58452380 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1085 309 278 42 0 chr9 65623821 65623893 -58452279 - RSINE1 SINE B4 -75 90 16 3 1085 226 241 35 0 chr9 65624435 65624493 -58451679 + MT2B LTR ERVL 201 260 -341 3 1085 362 159 87 0 chr9 65624441 65624510 -58451662 + B1F2 SINE Alu 50 124 -25 3 1085 233 214 0 0 chr9 65625938 65625980 -58450192 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1085 1261 41 0 13 chr9 65626011 65626160 -58450012 + B1_Mus2 SINE Alu 1 147 0 3 1085 311 130 74 0 chr9 65626315 65626369 -58449803 + PB1D9 SINE Alu 51 108 -12 3 1085 285 29 0 0 chr9 65626370 65626404 -58449768 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1085 254 281 0 163 chr9 65626404 65626450 -58449722 + RLTR25A LTR ERVK 576 601 -502 3 1085 775 207 20 27 chr9 65626450 65626599 -58449573 + B1_Mur3 SINE Alu 2 149 0 3 1085 228 39 96 19 chr9 65626601 65626653 -58449519 + A-rich Low_complexity Low_complexity 1 56 0 3 1085 232 273 44 33 chr9 65626654 65626745 -58449427 - Charlie12 DNA MER1_type -2745 128 37 3 1085 398 277 152 70 chr9 65627005 65627335 -58448837 + BGLII_B LTR ERVK 58 414 -27 3 1085 446 177 0 0 chr9 65627356 65627435 -58448737 - B1_Mur4 SINE Alu -52 98 20 4 1085 580 231 149 11 chr9 65627476 65627664 -58448508 - B3 SINE B2 -1 215 2 4 1085 1223 90 0 0 chr9 65627667 65627812 -58448360 - B1_Mus2 SINE Alu -1 146 2 4 1085 290 338 0 0 chr9 65627874 65627948 -58448224 + PB1D10 SINE Alu 2 75 -42 4 1085 1043 62 0 44 chr9 65628420 65628555 -58447617 + B1_Mus2 SINE Alu 1 129 -18 4 1085 284 231 0 0 chr9 65628590 65628642 -58447530 + ID_B1 SINE B4 167 218 -6 4 1085 428 264 61 48 chr9 65628813 65629023 -58447149 - B4 SINE B4 -1 291 2 4 1085 248 412 83 5 chr9 65629024 65629241 -58446931 - MamRep137 DNA TcMar? -130 314 81 4 1085 1462 69 5 31 chr9 65629795 65629989 -58446183 - B2_Mm2 SINE B2 -5 190 2 4 1085 734 221 34 7 chr9 65630031 65630177 -58445995 + ID_B1 SINE B4 67 216 -8 4 1085 1432 242 101 67 chr9 65631079 65631544 -58444628 + Lx9 LINE L1 7154 7634 -10 4 1085 425 306 8 76 chr9 65632178 65632309 -58443863 + RSINE1 SINE B4 44 165 0 4 1085 352 164 44 15 chr9 65632751 65632819 -58443353 - PB1 SINE Alu -11 116 47 4 1085 247 356 85 0 chr9 65632838 65632956 -58443216 - MIRb SINE MIR -27 241 114 4 1085 1273 41 21 0 chr9 65633085 65633230 -58442942 + B1_Mus1 SINE Alu 1 148 0 4 1085 959 68 68 0 chr9 65633521 65633654 -58442518 + B1_Mus2 SINE Alu 6 147 0 4 1085 198 0 0 0 chr9 65633654 65633676 -58442496 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1085 502 215 27 36 chr9 65633735 65633846 -58442326 - B3 SINE B2 -106 110 1 4 1085 297 269 83 37 chr9 65633942 65634050 -58442122 - PB1D10 SINE Alu -2 115 3 4 1085 666 246 55 65 chr9 65634554 65634754 -58441418 - B3A SINE B2 0 198 1 4 1085 24 0 0 0 chr9 65635003 65635027 -58441145 + AT_rich Low_complexity Low_complexity 1 24 0 4 1085 25 0 0 0 chr9 65636032 65636057 -58440115 + AT_rich Low_complexity Low_complexity 1 25 0 4 1085 276 305 92 35 chr9 65636067 65636119 -58440053 - MIR SINE MIR -48 214 157 4 1085 812 203 35 0 chr9 65636119 65636262 -58439910 - B1_Mur2 SINE Alu 0 149 2 4 1085 276 305 92 35 chr9 65636262 65636382 -58439790 - MIR SINE MIR -106 156 32 4 1085 539 293 79 0 chr9 65636447 65636587 -58439585 - RSINE1 SINE B4 0 165 15 4 1085 188 303 60 15 chr9 65636749 65636816 -58439356 - MER5A DNA MER1_type -57 132 63 4 1085 252 0 0 0 chr9 65636820 65636848 -58439324 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 4 1085 363 301 14 128 chr9 65636895 65637036 -58439136 - RSINE1 SINE B4 -37 128 4 4 1085 402 269 18 36 chr9 65637199 65637311 -58438861 + RSINE1 SINE B4 3 112 -53 4 1085 1162 121 20 40 chr9 65637330 65637528 -58438644 + B2_Mm2 SINE B2 2 195 0 4 1085 429 321 46 52 chr9 65637599 65637773 -58438399 + B4A SINE B4 1 173 -119 4 1085 954 188 125 0 chr9 65639288 65639480 -58436692 + B3 SINE B2 1 216 0 4 1085 244 259 40 141 chr9 65640097 65640193 -58435979 + B1F2 SINE Alu 1 86 -63 4 1085 474 184 62 50 chr9 65640193 65640321 -58435851 + B1_Mus2 SINE Alu 3 148 -1 4 1085 1266 54 0 0 chr9 65644443 65644590 -58431582 + B1_Mus2 SINE Alu 1 147 0 4 1085 366 80 0 0 chr9 65644600 65644650 -58431522 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 4 1085 281 335 79 6 chr9 65644679 65644844 -58431328 + L1M6 LINE L1 706 882 -5614 4 1085 304 252 77 23 chr9 65644947 65645077 -58431095 + L1M6 LINE L1 921 1057 -5439 4 1085 519 252 38 89 chr9 65645753 65645910 -58430262 + B4 SINE B4 71 219 -73 4 1085 1038 60 0 0 chr9 65645783 65645917 -58430255 + B1_Mus2 SINE Alu 14 147 0 4 1085 225 307 200 0 chr9 65646018 65646093 -58430079 - ID_B1 SINE B4 -22 202 113 4 1085 512 289 16 32 chr9 65646105 65646230 -58429942 - PB1 SINE Alu -4 123 1 4 1085 201 74 0 0 chr9 65646244 65646271 -58429901 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1085 790 153 57 64 chr9 65646274 65646414 -58429758 + B1_Mur3 SINE Alu 1 139 -10 4 1085 788 149 81 24 chr9 65646557 65646681 -58429491 - B1_Mm SINE Alu -16 131 1 4 1085 320 306 90 8 chr9 65646714 65646836 -58429336 + B1F SINE Alu 10 141 -8 4 1085 946 207 17 0 chr9 65646979 65647153 -58429019 - B3 SINE B2 0 216 40 4 1085 222 128 0 0 chr9 65647153 65647192 -58428980 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1085 230 98 49 0 chr9 65647192 65647233 -58428939 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 4 1085 226 121 14 96 chr9 65647233 65647306 -58428866 + B2_Mm1t SINE B2 127 193 0 4 1085 760 149 0 0 chr9 65648710 65648824 -58427348 - B1_Mus2 SINE Alu -21 126 13 4 1085 411 289 60 34 chr9 65648824 65648871 -58427301 - ID_B1 SINE B4 -1 199 55 4 1085 603 300 30 64 chr9 65648891 65649094 -58427078 + B3A SINE B2 1 196 -2 4 1085 253 159 0 43 chr9 65649318 65649364 -58426808 + polypyrimidine Low_complexity Low_complexity 4 47 0 4 1085 526 173 48 9 chr9 65649365 65649470 -58426702 - PB1D9 SINE Alu -6 114 6 4 1085 259 241 0 18 chr9 65649424 65649479 -58426693 - B4A SINE B4 -157 135 82 4 1085 444 222 81 27 chr9 65649482 65649593 -58426579 - PB1D10 SINE Alu 0 117 1 4 1085 1374 121 14 0 chr9 65649683 65649890 -58426282 - Lx2 LINE L1 0 6997 6788 4 1085 350 221 279 54 chr9 65649921 65650050 -58426122 + ID_B1 SINE B4 4 161 -63 4 1085 231 261 27 55 chr9 65649990 65650063 -58426109 + B1F2 SINE Alu 6 76 -73 4 1085 355 236 33 98 chr9 65650059 65650181 -58425991 + RMER15 LTR ERVL 363 476 -99 4 1085 23 33 0 0 chr9 65650302 65650332 -58425840 + AT_rich Low_complexity Low_complexity 1 30 0 4 1085 487 222 0 0 chr9 65650428 65650509 -58425663 + ID4_ SINE ID 3 83 0 4 1085 216 97 0 0 chr9 65651515 65651546 -58424626 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 1085 244 217 116 0 chr9 65651686 65651755 -58424417 + B1_Mur2 SINE Alu 73 149 0 4 1085 266 376 56 77 chr9 65651944 65652281 -58423891 - MER47B DNA MER2_type -88 330 1 4 1085 540 185 117 8 chr9 65652307 65652427 -58423745 + B1F2 SINE Alu 10 142 -7 4 1085 823 240 61 25 chr9 65652443 65652640 -58423532 + B3 SINE B2 1 204 -12 4 1085 189 0 0 0 chr9 65652641 65652662 -58423510 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1085 1116 90 0 0 chr9 65652662 65652817 -58423355 - RLTR15 LTR ERVK -70 289 135 4 1085 23 0 0 0 chr9 65652878 65652901 -58423271 + AT_rich Low_complexity Low_complexity 1 23 0 4 1085 298 242 198 0 chr9 65653072 65653163 -58423009 + PB1D9 SINE Alu 4 112 -8 4 1085 385 281 28 37 chr9 65653229 65653336 -58422836 - RSINE1 SINE B4 -57 108 3 4 1085 24 0 0 0 chr9 65653593 65653617 -58422555 + AT_rich Low_complexity Low_complexity 1 24 0 4 1085 404 298 43 17 chr9 65653737 65653853 -58422319 + PB1 SINE Alu 7 125 -2 4 1085 25 75 0 0 chr9 65654113 65654166 -58422006 + AT_rich Low_complexity Low_complexity 1 53 0 4 1085 1240 65 6 29 chr9 65654177 65654336 -58421836 + B2_Mm1t SINE B2 1 160 -33 4 1085 321 68 0 0 chr9 65654336 65654380 -58421792 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 4 1085 1240 65 6 29 chr9 65654380 65654393 -58421779 + B2_Mm1t SINE B2 161 169 -24 4 1085 433 286 67 0 chr9 65654390 65654422 -58421750 - ID_B1 SINE B4 -11 213 182 4 1085 1598 68 0 5 chr9 65654422 65654614 -58421558 - B2_Mm2 SINE B2 -2 193 3 4 1085 433 286 67 0 chr9 65654614 65654700 -58421472 - ID_B1 SINE B4 -43 181 88 4 1085 1042 212 0 34 chr9 65654778 65654983 -58421189 + B3A SINE B2 1 198 0 4 1085 844 169 49 0 chr9 65654989 65655131 -58421041 + B1_Mur3 SINE Alu 1 149 0 4 1085 249 33 0 0 chr9 65655458 65655488 -58420684 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1085 438 69 0 0 chr9 65655488 65655546 -58420626 + (TCCC)n Simple_repeat Simple_repeat 3 60 0 4 1085 441 279 53 73 chr9 65655660 65655811 -58420361 + ID_B1 SINE B4 76 223 -1 4 1085 600 178 30 61 chr9 65655812 65655944 -58420228 + RSINE1 SINE B4 3 130 -35 4 1085 248 213 0 0 chr9 65656060 65656107 -58420065 + L1MA5 LINE L1 5885 5931 -369 4 1085 34 24 0 0 chr9 65656114 65656155 -58420017 + AT_rich Low_complexity Low_complexity 1 41 0 4 1085 461 229 10 0 chr9 65656155 65656251 -58419921 - B1_Mus2 SINE Alu -49 98 2 4 1085 266 241 21 84 chr9 65656170 65656265 -58419907 - MT2B LTR ERVL -361 240 152 4 1085 600 183 87 0 chr9 65656452 65656567 -58419605 + B1_Mur1 SINE Alu 25 149 0 4 1085 236 30 30 0 chr9 65656568 65656601 -58419571 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1085 1321 62 10 78 chr9 65656623 65656816 -58419356 + B2_Mm2 SINE B2 2 181 -14 4 1085 24 24 0 24 chr9 65656826 65656840 -58419332 + AT_rich Low_complexity Low_complexity 1 14 0 4 1085 1255 68 0 0 chr9 65656840 65656987 -58419185 - B1_Mm SINE Alu 0 147 1 4 1085 24 24 0 24 chr9 65656987 65657014 -58419158 + AT_rich Low_complexity Low_complexity 1 27 0 4 1085 682 149 130 9 chr9 65657031 65657146 -58419026 + B1_Mus1 SINE Alu 5 133 -15 4 1085 1762 36 0 0 chr9 65657298 65657490 -58418682 + B2_Mm1a SINE B2 2 193 0 4 1085 254 352 54 27 chr9 65657605 65657716 -58418456 + MLT1A0 LTR MaLR 162 275 -90 4 1085 313 113 479 0 chr9 65657931 65658002 -58418170 + B1_Mus2 SINE Alu 1 105 -42 4 1085 204 40 0 0 chr9 65658022 65658047 -58418125 + (CCA)n Simple_repeat Simple_repeat 1 25 0 4 1085 574 213 34 57 chr9 65658052 65658229 -58417943 + B3 SINE B2 1 216 0 4 1085 1066 265 161 47 chr9 65658265 65658712 -58417460 + Lx9 LINE L1 6959 7456 -188 5 1085 249 33 0 0 chr9 65658713 65658743 -58417429 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1085 316 230 46 38 chr9 65658746 65658877 -58417295 + Lx9 LINE L1 7509 7640 -4 5 1085 320 241 101 0 chr9 65659042 65659121 -58417051 + RSINE1 SINE B4 79 165 0 5 1085 513 80 0 0 chr9 65659441 65659516 -58416656 + (GGA)n Simple_repeat Simple_repeat 1 75 0 5 1085 737 274 70 0 chr9 65659516 65659717 -58416455 + ID_B1 SINE B4 2 216 -8 5 1085 1018 248 14 0 chr9 65659841 65660051 -58416121 + B3 SINE B2 1 213 -3 5 1085 306 328 0 0 chr9 65660437 65660504 -58415668 + ID_B1 SINE B4 91 157 -67 5 1085 395 169 25 38 chr9 65660713 65660793 -58415379 + ID_B1 SINE B4 146 224 0 5 1085 372 247 27 146 chr9 65660824 65661009 -58415163 + B4A SINE B4 90 252 -40 5 1085 553 316 6 45 chr9 65661140 65661296 -58414876 - B4A SINE B4 -142 150 1 5 1085 970 148 0 27 chr9 65661328 65661474 -58414698 - B1_Mur4 SINE Alu -8 142 1 5 1085 283 252 256 16 chr9 65661514 65661643 -58414529 + RSINE1 SINE B4 4 163 -2 5 1085 673 233 8 0 chr9 65661816 65661936 -58414236 + RSINE1 SINE B4 4 124 -41 5 1085 319 310 92 25 chr9 65662061 65662180 -58413992 - RSINE1 SINE B4 -34 131 5 5 1085 319 264 156 23 chr9 65662188 65662316 -58413856 - B1F SINE Alu 0 149 5 5 1085 325 296 40 20 chr9 65662348 65662448 -58413724 - PB1D10 SINE Alu -3 114 13 5 1085 937 163 14 0 chr9 65662485 65662632 -58413540 + B1_Mur4 SINE Alu 1 149 -1 5 1085 1860 118 75 10 chr9 65662797 65663104 -58413068 - ORR1A2 LTR MaLR 0 327 1 5 1085 638 230 28 56 chr9 65663193 65663336 -58412836 - B1_Mur2 SINE Alu -10 139 1 5 1085 623 175 251 29 chr9 65663535 65663706 -58412466 + B3 SINE B2 6 214 -2 5 1085 1622 197 89 59 chr9 65663950 65664322 -58411850 + ORR1C2 LTR MaLR 2 384 0 5 1085 729 129 155 0 chr9 65664531 65664647 -58411525 + B1_Mus1 SINE Alu 2 135 -13 5 1085 192 152 0 0 chr9 65664653 65664686 -58411486 + GA-rich Low_complexity Low_complexity 1 33 0 5 1085 321 26 0 0 chr9 65664924 65664962 -58411210 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1085 453 203 79 39 chr9 65665005 65665016 -58411156 - PB1D10 SINE Alu -8 109 63 5 1085 457 169 108 0 chr9 65665016 65665099 -58411073 - ID_B1 SINE B4 -39 185 94 5 1085 453 203 79 39 chr9 65665099 65665110 -58411062 - PB1D10 SINE Alu -8 62 2 5 1085 1208 48 0 27 chr9 65665616 65665766 -58410406 + B1_Mus2 SINE Alu 2 147 0 5 1085 239 129 32 0 chr9 65665768 65665830 -58410342 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 5 1085 411 200 72 16 chr9 65665897 65666011 -58410161 + B1F SINE Alu 2 116 -1 5 1085 238 357 0 0 chr9 65666037 65666107 -58410065 + L2a LINE L2 3337 3406 -20 5 135 429 314 19 50 chr9 65666919 65667080 -58409092 + RSINE1 SINE B4 2 157 -8 5 1086 246 32 0 0 chr9 65667084 65667115 -58409057 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1086 844 137 0 64 chr9 65667149 65667305 -58408867 - B1_Mus1 SINE Alu 0 148 3 5 1086 482 172 143 79 chr9 65667412 65667538 -58408634 + B1_Mur1 SINE Alu 2 135 -14 5 1086 189 0 0 0 chr9 65667538 65667559 -58408613 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 5 1086 870 268 39 0 chr9 65667566 65667771 -58408401 + B3 SINE B2 2 214 -2 5 1086 195 333 0 0 chr9 65667891 65667948 -58408224 + L2c LINE L2 3261 3317 -70 5 1086 21 0 0 0 chr9 65667958 65667979 -58408193 + AT_rich Low_complexity Low_complexity 1 21 0 5 1086 409 201 171 82 chr9 65668092 65668239 -58407933 + B3 SINE B2 1 162 -36 5 1086 210 143 0 0 chr9 65668239 65668274 -58407898 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1086 1209 48 0 0 chr9 65668721 65668867 -58407305 + B1_Mus2 SINE Alu 1 146 -1 5 1086 815 171 0 6 chr9 65668867 65669026 -58407146 + GA-rich Low_complexity Low_complexity 1 158 0 5 1086 330 272 65 58 chr9 65669027 65669335 -58406837 + RLTR15 LTR ERVK 50 359 0 5 1086 434 291 0 0 chr9 65669595 65669698 -58406474 + RSINE1 SINE B4 2 104 -61 5 1086 892 43 0 0 chr9 65669789 65669906 -58406266 + B1_Mm SINE Alu 31 147 0 5 1086 243 0 0 0 chr9 65669906 65669933 -58406239 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1086 208 229 0 20 chr9 65670132 65670181 -58405991 + G-rich Low_complexity Low_complexity 4 51 0 5 1086 644 165 18 180 chr9 65670740 65670962 -58405210 + B2_Mm1a SINE B2 1 186 -7 5 1086 22 0 0 0 chr9 65671067 65671089 -58405083 + AT_rich Low_complexity Low_complexity 1 22 0 5 1086 888 62 354 0 chr9 65672995 65673139 -58403033 + B2_Mm2 SINE B2 1 195 0 5 1086 259 227 144 22 chr9 65673554 65673644 -58402528 + PB1D10 SINE Alu 2 102 -15 5 1086 211 284 23 34 chr9 65675078 65675253 -58400919 + C-rich Low_complexity Low_complexity 3 175 0 5 1086 27 73 0 0 chr9 65675271 65675326 -58400846 + GC_rich Low_complexity Low_complexity 1 55 0 5 1086 212 106 0 60 chr9 65675377 65675427 -58400745 + (CCCCG)n Simple_repeat Simple_repeat 1 47 0 5 1086 408 40 0 0 chr9 65675465 65675515 -58400657 + (CCG)n Simple_repeat Simple_repeat 3 52 0 5 1086 672 216 43 0 chr9 65676017 65676156 -58400016 - RSINE1 SINE B4 -18 147 3 5 1086 263 302 98 28 chr9 65677047 65677190 -58398982 + MER58B DNA MER1_type 1 153 -188 5 1086 247 229 96 77 chr9 65677193 65677297 -58398875 + PB1D10 SINE Alu 6 111 -6 5 1086 239 319 53 0 chr9 65677296 65677390 -58398782 + MER58B DNA MER1_type 165 263 -78 5 1086 314 190 77 216 chr9 65677459 65677578 -58398594 + MER3 DNA MER1_type 52 145 -64 5 1086 1283 27 0 0 chr9 65677578 65677725 -58398447 - B1_Mm SINE Alu 0 147 1 5 1086 314 190 77 216 chr9 65677725 65677786 -58398386 + MER3 DNA MER1_type 146 206 -3 5 1086 379 172 0 15 chr9 65677792 65677857 -58398315 - PB1D9 SINE Alu -56 64 1 5 1086 265 191 21 0 chr9 65678776 65678823 -58397349 - B1F1 SINE Alu -100 49 2 5 1086 462 267 0 0 chr9 65680594 65680714 -58395458 + PB1D7 SINE Alu 1 120 0 5 1086 22 35 0 0 chr9 65680955 65680984 -58395188 + AT_rich Low_complexity Low_complexity 1 29 0 5 1086 463 273 12 9 chr9 65681883 65682016 -58394156 + B1F2 SINE Alu 14 149 0 5 1086 432 99 0 40 chr9 65682095 65682169 -58394003 + B3 SINE B2 1 71 -145 5 1086 1288 14 0 13 chr9 65682344 65682494 -58393678 + B1_Mus1 SINE Alu 1 148 0 5 1086 202 347 14 0 chr9 65682634 65682722 -58393450 + MIRc SINE MIR 79 171 -105 5 1086 370 290 30 0 chr9 65683084 65683184 -58392988 + ID_B1 SINE B4 120 222 -2 5 1086 374 273 77 77 chr9 65683653 65683796 -58392376 + B1F SINE Alu 6 148 -1 5 1086 942 174 194 11 chr9 65683800 65683980 -58392192 + B3 SINE B2 1 213 -3 5 1086 786 50 0 0 chr9 65684003 65684103 -58392069 + B2_Mm2 SINE B2 2 101 -94 5 1086 636 157 46 0 chr9 65684165 65684273 -58391899 + 5S rRNA rRNA 8 120 -1 5 1086 461 287 48 42 chr9 65684472 65684639 -58391533 - MER2 DNA MER2_type -28 317 150 5 1086 721 205 66 6 chr9 65684657 65684824 -58391348 - B3 SINE B2 0 216 40 5 1086 389 336 53 27 chr9 65685127 65685277 -58390895 - RSINE1 SINE B4 -1 164 11 5 1086 604 244 8 0 chr9 65685321 65685440 -58390732 + ID_B1 SINE B4 87 206 -18 5 1086 494 233 0 19 chr9 65685564 65685669 -58390503 + PB1D7 SINE Alu 18 120 0 5 1086 893 172 207 0 chr9 65685797 65685971 -58390201 + B3 SINE B2 1 210 -6 5 1086 1333 73 62 0 chr9 65686549 65686727 -58389445 + B2_Mm2 SINE B2 2 190 -5 5 1086 1202 47 0 20 chr9 65686901 65687052 -58389120 - B1_Mus1 SINE Alu 0 148 1 5 1086 22 0 0 0 chr9 65687462 65687484 -58388688 + AT_rich Low_complexity Low_complexity 1 22 0 5 1086 417 329 31 1 chr9 65687813 65687954 -58388218 + B1F SINE Alu 2 145 -4 5 1086 722 213 0 0 chr9 65687955 65688091 -58388081 + B1_Mur1 SINE Alu 13 148 -1 5 1086 294 314 49 0 chr9 65688435 65688537 -58387635 + B4A SINE B4 141 247 -45 5 1086 283 269 97 0 chr9 65688663 65688756 -58387416 - B4A SINE B4 -167 125 24 5 1086 234 0 0 0 chr9 65688757 65688783 -58387389 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 1086 685 223 46 0 chr9 65688783 65688913 -58387259 - B1_Mur2 SINE Alu -13 136 1 5 1086 367 258 10 20 chr9 65688931 65689030 -58387142 + L2a LINE L2 1982 2079 -1340 5 1086 235 185 0 115 chr9 65689032 65689093 -58387079 - PB1D9 SINE Alu -66 54 1 5 1086 441 241 0 0 chr9 65689116 65689195 -58386977 - ID4 SINE ID -2 81 3 5 1086 369 243 93 73 chr9 65689407 65689558 -58386614 + RSINE1 SINE B4 12 165 0 5 1086 759 52 0 0 chr9 65689562 65689658 -58386514 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 1086 572 261 165 10 chr9 65689703 65690116 -58386056 + L1MB4 LINE L1 5494 5971 -209 5 1086 683 104 9 0 chr9 65690287 65690393 -58385779 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 5 1086 556 256 46 36 chr9 65690409 65690578 -58385594 + B3A SINE B2 50 215 -1 5 1086 778 104 136 0 chr9 65690580 65690705 -58385467 + B1_Mur2 SINE Alu 1 142 -7 5 1086 370 260 152 25 chr9 65690727 65690924 -58385248 + L1MB4 LINE L1 5958 6179 -1 5 1086 772 229 46 0 chr9 65690947 65691122 -58385050 + B3A SINE B2 1 183 -15 5 1086 1367 63 11 0 chr9 65691147 65691321 -58384851 + B2_Mm2 SINE B2 1 176 -19 5 1086 30 0 0 0 chr9 65691326 65691356 -58384816 + AT_rich Low_complexity Low_complexity 1 30 0 5 1086 1014 269 117 60 chr9 65691362 65691825 -58384347 - RCHARR1 DNA MER1_type -451 523 35 6 1086 244 299 43 3 chr9 65691865 65691990 -58384182 + L2a LINE L2 3036 3175 -251 5 1086 255 159 14 113 chr9 65691991 65692062 -58384110 + ID4_ SINE ID 18 81 -2 6 1086 301 250 173 0 chr9 65692123 65692227 -58383945 + L2a LINE L2 3207 3328 -98 5 1086 266 265 96 0 chr9 65692314 65692397 -58383775 + B4A SINE B4 181 271 -21 6 1086 312 266 51 42 chr9 65692668 65692786 -58383386 + PB1 SINE Alu 6 124 -3 6 1086 301 176 73 0 chr9 65692796 65692864 -58383308 + ID4 SINE ID 3 75 -8 6 1086 263 264 42 0 chr9 65693506 65693578 -58382594 - ID4_ SINE ID -6 77 3 6 1086 1692 168 44 19 chr9 65693679 65693995 -58382177 + Lx5 LINE L1 6727 7050 0 6 1086 375 195 164 74 chr9 65694105 65694227 -58381945 + B1_Mur3 SINE Alu 17 149 0 6 1086 272 200 18 35 chr9 65694273 65694330 -58381842 - RSINE1 SINE B4 -107 58 3 6 1086 526 234 0 0 chr9 65694387 65694494 -58381678 + PB1D9 SINE Alu 9 115 -5 6 1086 522 83 0 0 chr9 65694502 65694574 -58381598 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 6 1086 222 320 103 0 chr9 65694594 65694691 -58381481 - L2a LINE L2 0 3426 3320 6 1086 400 211 20 31 chr9 65694856 65694954 -58381218 + B1F1 SINE Alu 2 98 -51 6 1086 953 134 14 0 chr9 65695163 65695305 -58380867 - B1_Mur4 SINE Alu -6 144 1 6 1086 393 278 94 8 chr9 65695307 65695434 -58380738 + B1_Mur1 SINE Alu 12 149 0 6 1086 814 235 56 0 chr9 65695441 65695637 -58380535 + B3 SINE B2 5 211 -5 6 1086 750 209 0 0 chr9 65696552 65696691 -58379481 - B1_Mus1 SINE Alu -7 141 3 6 1086 1083 167 5 10 chr9 65696723 65696917 -58379255 - B2_Mm2 SINE B2 -1 194 2 6 1086 231 281 141 0 chr9 65697318 65697382 -58378790 + ID4 SINE ID 1 73 -10 6 1086 336 308 8 0 chr9 65697382 65697502 -58378670 - MER103 DNA DNA -1 165 45 6 1086 232 254 0 0 chr9 65697612 65697667 -58378505 + ID4 SINE ID 20 74 -9 6 1086 715 133 115 141 chr9 65697668 65697860 -58378312 + RMER4B LTR ERVK 1 187 -398 6 1086 307 152 0 0 chr9 65697858 65697904 -58378268 + B1_Mur2 SINE Alu 98 143 -6 6 1086 22 35 0 0 chr9 65698278 65698307 -58377865 + AT_rich Low_complexity Low_complexity 1 29 0 6 1086 233 0 0 59 chr9 65698490 65698524 -58377648 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 6 1086 617 164 147 0 chr9 65698524 65698640 -58377532 - B1_Mur1 SINE Alu -12 137 5 6 1086 330 239 104 17 chr9 65698839 65698954 -58377218 + B1F SINE Alu 6 130 -19 6 1086 689 283 47 120 chr9 65699607 65700016 -58376156 + MTE2a LTR MaLR 1 379 0 6 1086 637 254 0 7 chr9 65700129 65700272 -58375900 - B1_Mur1 SINE Alu -6 143 2 6 1086 637 217 14 21 chr9 65700339 65700480 -58375692 + B1F SINE Alu 1 140 -9 6 1086 195 114 0 0 chr9 65700523 65700558 -58375614 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 6 1086 687 205 31 0 chr9 65701136 65701263 -58374909 + B1_Mur1 SINE Alu 2 132 -17 6 1086 294 302 100 65 chr9 65701267 65701437 -58374735 - B3 SINE B2 -32 184 9 6 1086 584 275 58 0 chr9 65701477 65701615 -58374557 - RSINE1 SINE B4 -9 156 11 6 1086 415 276 56 99 chr9 65702582 65702608 -58373564 + B4 SINE B4 70 157 -135 6 1086 600 165 0 76 chr9 65702608 65702726 -58373446 + B1_Mur1 SINE Alu 2 110 -39 6 1086 415 276 56 99 chr9 65702726 65702743 -58373429 + B4 SINE B4 158 223 -69 6 1086 190 29 88 0 chr9 65702743 65702777 -58373395 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1086 1166 84 126 0 chr9 65702936 65703103 -58373069 + B2_Mm2 SINE B2 2 189 -6 6 1086 306 300 12 0 chr9 65703221 65703301 -58372871 + ID4 SINE ID 2 82 -1 6 1086 263 299 39 0 chr9 65703554 65703631 -58372541 - ID4 SINE ID -1 82 3 6 1086 1524 48 0 26 chr9 65703740 65703933 -58372239 - B2_Mm1a SINE B2 -5 188 1 6 1086 1302 91 17 0 chr9 65704031 65704207 -58371965 + B2_Mm1t SINE B2 1 179 -14 6 1086 467 74 330 9 chr9 65704264 65704373 -58371799 + B2_Mm2 SINE B2 47 190 -5 6 1086 189 74 0 0 chr9 65704409 65704436 -58371736 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 6 1086 824 262 24 5 chr9 65704475 65704682 -58371490 - B3 SINE B2 0 216 6 6 1086 360 0 0 0 chr9 65704736 65704776 -58371396 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1086 434 246 9 9 chr9 65704894 65705009 -58371163 - PB1D10 SINE Alu -1 116 2 6 1086 288 206 0 0 chr9 65705419 65705470 -58370702 + T-rich Low_complexity Low_complexity 18 68 0 6 1086 194 0 39 0 chr9 65705477 65705503 -58370669 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1086 1178 68 0 0 chr9 65705503 65705642 -58370530 - B1_Mus2 SINE Alu -7 140 2 6 1086 288 206 0 0 chr9 65705642 65705658 -58370514 + T-rich Low_complexity Low_complexity 2 17 0 6 1086 752 200 13 7 chr9 65705658 65705809 -58370363 - ID_B1 SINE B4 0 224 73 6 1086 494 167 17 69 chr9 65705822 65705938 -58370234 - B1_Mus1 SINE Alu -5 143 34 6 1086 648 128 2 16 chr9 65706527 65706653 -58369519 + ORR1C2 LTR MaLR 258 384 0 6 1086 1248 84 17 0 chr9 65706668 65706846 -58369326 + B2_Mm2 SINE B2 15 195 0 6 1086 380 111 0 16 chr9 65706846 65706910 -58369262 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 6 1086 980 196 45 18 chr9 65706931 65707155 -58369017 + ORR1C2-int LTR MaLR 4 233 -1276 6 1086 285 51 0 0 chr9 65707183 65707222 -58368950 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1086 1454 80 16 0 chr9 65707324 65707512 -58368660 - B2_Mm2 SINE B2 0 195 5 6 1086 519 312 0 0 chr9 65707515 65707653 -58368519 + B1F1 SINE Alu 3 140 -9 6 1086 486 289 46 0 chr9 65707661 65707834 -58368338 + B3 SINE B2 2 182 -34 6 1086 25 51 0 0 chr9 65707834 65707873 -58368299 + AT_rich Low_complexity Low_complexity 1 39 0 6 1086 1156 74 90 17 chr9 65707922 65708100 -58368072 - B2_Mm2 SINE B2 0 195 5 6 1086 1131 56 21 0 chr9 65708136 65708280 -58367892 + B1_Mm SINE Alu 1 147 0 6 1086 1153 36 0 21 chr9 65708309 65708451 -58367721 + B1_Mus1 SINE Alu 2 140 -8 6 1086 24 32 0 0 chr9 65708497 65708528 -58367644 + AT_rich Low_complexity Low_complexity 1 31 0 6 1086 480 190 77 34 chr9 65708664 65708847 -58367325 - B3 SINE B2 0 195 1 6 1086 574 91 20 0 chr9 65708857 65708956 -58367216 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 1086 501 292 7 42 chr9 65708956 65709099 -58367073 - RSINE1 SINE B4 -25 140 3 6 1086 753 197 169 5 chr9 65709218 65709402 -58366770 - B3 SINE B2 0 216 3 6 1086 723 161 88 0 chr9 65709433 65709570 -58366602 - B1_Mur4 SINE Alu -1 149 1 6 1086 735 12 0 0 chr9 65709572 65709656 -58366516 + (TTTCC)n Simple_repeat Simple_repeat 3 86 0 6 1086 254 299 0 15 chr9 65709661 65709710 -58366462 + polypyrimidine Low_complexity Low_complexity 21 69 0 6 1086 516 32 0 0 chr9 65709710 65709772 -58366400 + (TTCTC)n Simple_repeat Simple_repeat 3 64 0 6 1086 254 299 0 15 chr9 65709772 65709790 -58366382 + polypyrimidine Low_complexity Low_complexity 3 20 0 6 1086 402 243 47 0 chr9 65709790 65709897 -58366275 - PB1D10 SINE Alu 0 117 6 6 1086 212 327 19 19 chr9 65710047 65710150 -58366022 - BC1_Mm scRNA scRNA -49 103 1 6 1086 513 308 59 70 chr9 65710310 65710582 -58365590 - B4A SINE B4 -18 274 6 6 1086 323 233 167 0 chr9 65710661 65710751 -58365421 - ID_B1 SINE B4 -27 197 93 6 1086 21 36 0 0 chr9 65710810 65710838 -58365334 + AT_rich Low_complexity Low_complexity 1 28 0 6 1086 323 259 0 0 chr9 65710846 65710927 -58365245 - ID4 SINE ID 0 83 3 6 1086 396 253 0 0 chr9 65710983 65711062 -58365110 - B1F SINE Alu -3 146 68 6 1086 227 360 13 0 chr9 65711139 65711214 -58364958 - ID4 SINE ID -6 77 2 6 1086 559 247 5 143 chr9 65711244 65711355 -58364817 - RSINE1 SINE B4 0 165 76 6 1086 563 40 14 0 chr9 65711355 65711429 -58364743 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1086 559 247 5 143 chr9 65711429 65711506 -58364666 - RSINE1 SINE B4 -90 75 3 6 1086 243 170 0 0 chr9 65711516 65711563 -58364609 + CT-rich Low_complexity Low_complexity 4 50 0 6 1086 231 356 100 65 chr9 65711648 65711909 -58364263 - B4 SINE B4 -11 281 12 6 1086 962 93 43 0 chr9 65712596 65712735 -58363437 - B1_Mus2 SINE Alu -1 146 2 6 1086 1558 48 11 0 chr9 65712880 65713068 -58363104 - B2_Mm1a SINE B2 -3 190 1 6 1086 735 158 28 21 chr9 65713103 65713245 -58362927 - B1_Mur4 SINE Alu 0 150 8 6 1086 1705 26 0 0 chr9 65713281 65713474 -58362698 + B2_Mm1a SINE B2 1 193 0 6 1086 2533 170 136 27 chr9 65713478 65713999 -58362173 - RMER1B Other Other -9 1057 480 6 1086 489 296 66 22 chr9 65714004 65714187 -58361985 - B3 SINE B2 -25 191 1 6 1086 279 0 0 0 chr9 65714564 65714595 -58361577 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 6 1086 984 121 14 0 chr9 65714649 65714790 -58361382 + B1_Mus1 SINE Alu 5 147 -1 6 1086 1169 51 0 0 chr9 65714792 65714929 -58361243 + B1_Mus1 SINE Alu 1 137 -11 6 1086 298 304 35 56 chr9 65715192 65715335 -58360837 - B1F SINE Alu -9 140 1 6 1086 1154 57 6 0 chr9 65718322 65718479 -58357693 + B2_Mm2 SINE B2 1 158 -37 6 1086 186 43 0 0 chr9 65718480 65718503 -58357669 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1086 367 317 29 0 chr9 65718504 65718608 -58357564 - PB1 SINE Alu -8 119 13 6 1086 320 265 0 97 chr9 65718759 65718872 -58357300 + MT2B LTR ERVL 156 257 -344 6 1086 860 181 0 0 chr9 65718773 65718917 -58357255 + B1_Mur3 SINE Alu 6 149 0 7 1086 681 189 314 0 chr9 65718950 65719109 -58357063 + B3 SINE B2 2 210 -6 7 1086 1385 78 15 20 chr9 65719134 65719330 -58356842 + B2_Mm2 SINE B2 1 195 0 7 1086 1138 69 0 14 chr9 65719372 65719519 -58356653 - B1_Mus1 SINE Alu -2 146 2 7 1086 21 57 0 0 chr9 65719567 65719602 -58356570 + AT_rich Low_complexity Low_complexity 1 35 0 7 1086 480 221 114 32 chr9 65719758 65719978 -58356194 - L1MC4a LINE L1 -679 7203 6966 7 1086 1182 56 0 14 chr9 65720087 65720232 -58355940 + B1_Mus1 SINE Alu 1 143 -5 7 1086 400 232 55 61 chr9 65720611 65720776 -58355396 + RNLTR23 LTR ERVK 479 642 0 7 1086 450 178 119 0 chr9 65720776 65720875 -58355297 + B1_Mus1 SINE Alu 38 148 0 7 1086 246 184 0 39 chr9 65721063 65721114 -58355058 + MT2B LTR ERVL 209 257 -327 6 1086 564 118 0 0 chr9 65721069 65721154 -58355018 + B1_Mus2 SINE Alu 58 142 -5 7 1086 1273 80 85 6 chr9 65721356 65721533 -58354639 + B2_Mm2 SINE B2 1 191 -4 7 1086 906 225 65 5 chr9 65721568 65721769 -58354403 + B3 SINE B2 1 213 -3 7 1086 327 350 8 86 chr9 65721821 65721949 -58354223 + B1F1 SINE Alu 10 127 -22 7 1086 251 193 147 30 chr9 65722111 65722190 -58353982 - MTD LTR MaLR 0 421 335 7 1086 380 147 0 13 chr9 65722224 65722300 -58353872 + (TA)n Simple_repeat Simple_repeat 1 75 0 7 1086 243 58 38 19 chr9 65722337 65722366 -58353806 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1086 1659 26 0 0 chr9 65722366 65722558 -58353614 + B2_Mm1a SINE B2 2 193 0 7 1086 243 58 38 19 chr9 65722558 65722581 -58353591 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 7 1086 1151 55 0 14 chr9 65723134 65723281 -58352891 - B1_Mm SINE Alu -1 146 2 7 1086 650 227 78 0 chr9 65723318 65723446 -58352726 - RSINE1 SINE B4 -13 152 15 7 1086 2863 139 24 30 chr9 65723468 65723965 -58352207 + RLTR12A LTR ERVK 71 564 -4 7 1086 571 260 72 39 chr9 65724004 65724184 -58351988 - ID_B1 SINE B4 -37 187 2 7 1086 242 307 13 39 chr9 65724206 65724284 -58351888 - ID4_ SINE ID -6 77 2 7 1086 349 247 49 12 chr9 65724324 65724406 -58351766 + RSINE1 SINE B4 23 107 -58 7 1086 411 21 0 0 chr9 65724406 65724454 -58351718 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1086 1367 72 11 6 chr9 65724572 65724754 -58351418 + B2_Mm2 SINE B2 2 184 -11 7 1086 1295 60 0 0 chr9 65724757 65724924 -58351248 + L1Md_T LINE L1 6416 6582 0 7 1086 406 0 37 0 chr9 65724946 65725000 -58351172 + (GAAAA)n Simple_repeat Simple_repeat 3 58 0 7 1086 272 264 82 8 chr9 65725125 65725247 -58350925 + L1M LINE L1 5294 5424 -760 7 1086 340 229 78 78 chr9 65725459 65725549 -58350623 - MER81 DNA AcHobo -13 101 12 7 1086 638 243 0 14 chr9 65725677 65725823 -58350349 - B1F1 SINE Alu -1 148 5 7 1086 543 214 25 25 chr9 65726108 65726228 -58349944 - B1F SINE Alu 0 149 30 7 1086 404 197 0 13 chr9 65726315 65726392 -58349780 - U1 snRNA snRNA -84 81 6 7 1086 432 333 60 32 chr9 65726491 65726708 -58349464 + ID_B1 SINE B4 2 224 0 7 1086 771 213 36 66 chr9 65727100 65727296 -58348876 - B2_Mm2 SINE B2 -1 194 5 7 1086 988 54 8 0 chr9 65727365 65727494 -58348678 + B1_Mus2 SINE Alu 18 147 0 7 1086 725 229 7 14 chr9 65727831 65727977 -58348195 + B1_Mus2 SINE Alu 1 145 -2 7 1086 338 235 50 30 chr9 65727992 65728093 -58348079 + B3 SINE B2 9 111 -105 7 1086 245 245 0 86 chr9 65728082 65728140 -58348032 - ID4 SINE ID -23 60 8 7 1086 210 239 0 0 chr9 65728261 65728307 -58347865 + B1F2 SINE Alu 7 52 -97 7 1086 998 101 132 29 chr9 65728336 65728510 -58347662 + URR1A DNA MER1_type 4 195 -31 7 1086 239 61 0 0 chr9 65729090 65729123 -58347049 - B1_Mus1 SINE Alu -115 33 1 7 1086 211 292 43 33 chr9 65729128 65729220 -58346952 - MIRb SINE MIR -15 253 161 7 1086 976 258 5 0 chr9 65729282 65729491 -58346681 + B3 SINE B2 1 210 -6 7 1086 1221 48 0 0 chr9 65729514 65729660 -58346512 + B1_Mus2 SINE Alu 1 146 -1 7 1086 221 0 0 33 chr9 65729660 65729690 -58346482 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1086 1039 160 38 22 chr9 65729707 65729892 -58346280 + B2_Mm2 SINE B2 6 193 -2 7 1086 613 269 6 64 chr9 65729957 65730128 -58346044 - RMER30 DNA MER1_type -24 178 18 7 1086 427 340 115 27 chr9 65730131 65730279 -58345893 + RSINE1 SINE B4 3 163 -2 7 1086 257 213 180 0 chr9 65730443 65730504 -58345668 - ID4 SINE ID 0 83 12 7 1086 457 227 47 30 chr9 65730552 65730740 -58345432 + B3 SINE B2 2 194 -1 7 1086 1212 55 0 7 chr9 65730741 65730889 -58345283 + B1_Mus1 SINE Alu 2 148 0 7 1086 192 97 0 0 chr9 65730889 65730920 -58345252 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 7 1086 21 57 0 0 chr9 65730931 65730966 -58345206 + AT_rich Low_complexity Low_complexity 1 35 0 7 1086 628 240 0 23 chr9 65730996 65731124 -58345048 + B1_Mur1 SINE Alu 12 136 -13 7 1086 1218 41 7 0 chr9 65731144 65731290 -58344882 + B1_Mus1 SINE Alu 2 148 0 7 1086 21 36 0 0 chr9 65731511 65731539 -58344633 + AT_rich Low_complexity Low_complexity 1 28 0 7 1086 428 256 116 0 chr9 65733491 65733612 -58342560 + B3 SINE B2 75 209 -7 7 1086 28 29 0 0 chr9 65733612 65733647 -58342525 + AT_rich Low_complexity Low_complexity 1 35 0 7 1086 427 243 55 18 chr9 65733668 65733777 -58342395 + PB1D9 SINE Alu 1 113 -7 7 1086 1112 71 7 0 chr9 65733788 65733928 -58342244 + B1_Mus1 SINE Alu 2 142 -6 7 1086 240 59 0 0 chr9 65733931 65733965 -58342207 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1086 646 228 45 39 chr9 65733970 65734125 -58342047 - RSINE1 SINE B4 -6 159 4 7 1086 1146 82 0 0 chr9 65734375 65734522 -58341650 - B1_Mus1 SINE Alu -1 147 1 7 1086 1587 37 0 10 chr9 65734555 65734748 -58341424 - B2_Mm1t SINE B2 -2 191 1 7 1086 300 257 0 54 chr9 65734791 65734865 -58341307 - RSINE1 SINE B4 -34 131 62 7 1086 354 152 163 0 chr9 65735053 65735145 -58341027 - B1_Mur2 SINE Alu 0 149 43 7 1086 727 306 24 0 chr9 65735198 65735404 -58340768 - ID_B1 SINE B4 -13 211 1 7 1086 293 301 34 95 chr9 65735514 65735661 -58340511 + B4A SINE B4 83 220 -72 7 1086 789 145 0 14 chr9 65735531 65735670 -58340502 + B1_Mur4 SINE Alu 13 150 0 7 1086 857 138 29 0 chr9 65735869 65736007 -58340165 + B1_Mus1 SINE Alu 1 142 -6 7 1086 1048 140 41 0 chr9 65736023 65736194 -58339978 + B2_Mm1t SINE B2 2 179 -14 7 1086 337 58 640 0 chr9 65736251 65736340 -58339832 + B2_Mm2 SINE B2 48 193 -2 7 1086 506 200 93 25 chr9 65736569 65736687 -58339485 - B1_Mus2 SINE Alu -21 126 1 7 1086 733 168 7 74 chr9 65736754 65736889 -58339283 - B3 SINE B2 -90 126 1 7 1086 445 278 84 21 chr9 65736926 65737119 -58339053 - B3A SINE B2 -3 192 8 7 1086 295 250 81 27 chr9 65737139 65737250 -58338922 - PB1D10 SINE Alu 0 117 1 7 1086 24 32 0 0 chr9 65737583 65737614 -58338558 + AT_rich Low_complexity Low_complexity 1 31 0 7 1086 250 235 14 68 chr9 65739049 65739122 -58337050 - BC1_Mm scRNA scRNA -14 69 1 7 1086 241 343 0 38 chr9 65739139 65739245 -58336927 + CT-rich Low_complexity Low_complexity 3 104 0 7 1086 481 212 10 10 chr9 65739248 65739348 -58336824 - ID_B1 SINE B4 -16 208 109 7 1086 216 0 0 0 chr9 65739349 65739373 -58336799 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1086 384 286 0 0 chr9 65739375 65739452 -58336720 - ID_B1 SINE B4 -21 203 127 7 1086 264 361 30 30 chr9 65739379 65739479 -58336693 - B1F SINE Alu -28 121 22 7 1086 259 338 28 0 chr9 65739681 65739752 -58336420 - ID4_ SINE ID -9 74 2 7 1086 297 321 15 44 chr9 65739773 65739815 -58336357 - ID_B1 SINE B4 -10 214 82 7 1086 346 277 11 11 chr9 65739815 65739910 -58336262 - PB1D10 SINE Alu -22 95 1 7 1086 245 268 71 0 chr9 65739953 65740009 -58336163 + ID4 SINE ID 8 67 -16 7 1086 26 30 0 0 chr9 65740037 65740070 -58336102 + AT_rich Low_complexity Low_complexity 1 33 0 7 1086 419 306 27 27 chr9 65740164 65740275 -58335897 - RSINE1 SINE B4 -11 154 44 7 1086 288 0 0 0 chr9 65740300 65740332 -58335840 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1086 288 0 0 0 chr9 65740332 65740363 -58335809 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 7 1086 485 238 7 176 chr9 65740386 65740481 -58335691 - B3A SINE B2 -69 129 52 7 1086 546 285 95 0 chr9 65740481 65740660 -58335512 - B3 SINE B2 -19 197 2 7 1086 485 238 7 176 chr9 65740660 65740717 -58335455 - B3A SINE B2 -147 51 3 7 1086 1504 57 0 15 chr9 65740775 65740972 -58335200 + B2_Mm2 SINE B2 2 195 0 7 1086 921 97 15 7 chr9 65740981 65741116 -58335056 + B1_Mur3 SINE Alu 1 136 -13 7 1086 341 266 35 44 chr9 65741584 65741698 -58334474 - PB1D7 SINE Alu -1 119 7 7 1086 204 321 0 0 chr9 65741712 65741768 -58334404 + T-rich Low_complexity Low_complexity 1 56 0 7 1086 241 350 12 0 chr9 65741845 65741925 -58334247 + ID4_ SINE ID 1 81 -2 7 1086 416 175 0 78 chr9 65742100 65742199 -58333973 - B1_Mur4 SINE Alu 0 150 56 7 1086 626 256 43 28 chr9 65742236 65742377 -58333795 - B1_Mur2 SINE Alu 0 149 7 7 1086 338 287 73 99 chr9 65742242 65742393 -58333779 - B4 SINE B4 -69 223 77 8 1086 630 226 124 21 chr9 65742461 65742655 -58333517 + B3 SINE B2 1 214 -2 8 1086 763 170 7 60 chr9 65742860 65743010 -58333162 + B1_Mur3 SINE Alu 1 142 -7 8 1086 1410 60 0 11 chr9 65743020 65743205 -58332967 + B2_Mm2 SINE B2 1 183 -12 8 1086 262 247 78 0 chr9 65743213 65743290 -58332882 + ID4_ SINE ID 1 83 0 8 1086 473 268 26 60 chr9 65743348 65743499 -58332673 - RSINE1 SINE B4 -18 147 2 8 1086 1605 37 0 0 chr9 65743521 65743710 -58332462 + B2_Mm1t SINE B2 2 190 -3 8 1086 1319 95 32 0 chr9 65743725 65743914 -58332258 - B2_Mm2 SINE B2 0 195 1 8 1086 809 179 15 0 chr9 65743916 65744050 -58332122 - B1_Mur1 SINE Alu -5 144 9 8 1086 697 223 29 0 chr9 65745136 65745275 -58330897 - B1_Mur4 SINE Alu -7 143 1 8 1086 244 224 172 0 chr9 65745458 65745516 -58330656 - ID_B1 SINE B4 -27 197 130 8 1086 226 233 133 0 chr9 65745524 65745584 -58330588 + ID2 SINE ID 1 68 -15 8 1086 248 53 26 0 chr9 65745589 65745627 -58330545 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1086 302 208 0 40 chr9 65745627 65745702 -58330470 - B1_Mur3 SINE Alu -11 138 67 8 1086 633 194 0 101 chr9 65745672 65745810 -58330362 - B1_Mur4 SINE Alu -24 126 3 8 1086 293 256 97 32 chr9 65745728 65745821 -58330351 - B4 SINE B4 -125 167 69 8 1086 423 333 44 22 chr9 65745844 65745979 -58330193 - B3A SINE B2 0 198 61 8 1086 365 272 96 10 chr9 65746161 65746265 -58329907 + PB1D10 SINE Alu 1 113 -4 8 1086 271 257 117 19 chr9 65746285 65746388 -58329784 + BC1_Mm scRNA scRNA 14 126 -26 8 1086 512 288 38 8 chr9 65746659 65746792 -58329380 - RSINE1 SINE B4 -6 159 23 8 1086 372 231 40 0 chr9 65746994 65747126 -58329046 - L1MA4 LINE L1 -375 5925 5776 8 1086 485 245 61 39 chr9 65747154 65747314 -58328858 - B3A SINE B2 -12 181 27 8 1086 489 127 0 0 chr9 65747317 65747396 -58328776 - B2_Mm2 SINE B2 -115 80 2 8 1086 583 298 48 5 chr9 65747639 65747828 -58328344 - B3A SINE B2 0 198 2 8 1086 571 258 32 8 chr9 65747835 65747960 -58328212 - B1F SINE Alu -1 148 21 8 1086 401 261 85 50 chr9 65747960 65747976 -58328196 - ID_B1 SINE B4 -1 223 78 8 1086 746 33 0 11 chr9 65748007 65748100 -58328072 + U6 snRNA snRNA 1 92 -15 8 1086 378 57 0 0 chr9 65748108 65748161 -58328011 - B2_Mm1a SINE B2 -14 179 127 8 1086 204 213 0 0 chr9 65748216 65748241 -58327931 + T-rich Low_complexity Low_complexity 23 47 0 8 1086 1211 78 0 166 chr9 65748241 65748256 -58327916 - B2_Mm1t SINE B2 0 193 180 8 1086 1179 69 0 0 chr9 65748256 65748401 -58327771 - B1_Mus1 SINE Alu -2 146 2 8 1086 1211 78 0 166 chr9 65748401 65748573 -58327599 - B2_Mm1t SINE B2 -14 179 35 8 1086 1077 82 0 39 chr9 65748573 65748726 -58327446 - B1_Mus1 SINE Alu 0 148 2 8 1086 1211 78 0 166 chr9 65748726 65748766 -58327406 - B2_Mm1t SINE B2 -159 34 3 8 1086 204 213 0 0 chr9 65748766 65748787 -58327385 + T-rich Low_complexity Low_complexity 2 22 0 8 1086 564 245 12 77 chr9 65748793 65748961 -58327211 - B3A SINE B2 0 198 42 8 1086 358 259 78 49 chr9 65748989 65749131 -58327041 - B1F1 SINE Alu -2 147 2 8 1086 473 65 587 0 chr9 65749781 65749873 -58326299 + B1_Mus2 SINE Alu 2 147 0 8 1086 527 212 69 55 chr9 65750018 65750163 -58326009 + B1_Mus2 SINE Alu 1 147 0 8 1086 228 227 61 0 chr9 65750363 65750429 -58325743 - B1_Mm SINE Alu -14 133 64 8 1086 518 216 97 18 chr9 65750572 65750685 -58325487 - B1_Mur1 SINE Alu -8 141 20 8 1086 297 0 0 0 chr9 65750732 65750765 -58325407 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1086 663 53 7 0 chr9 65751145 65751237 -58324935 - B1_Mus2 SINE Alu -3 147 49 8 1086 832 249 9 62 chr9 65751335 65751562 -58324610 - B3 SINE B2 0 216 2 8 1086 509 219 114 0 chr9 65751571 65751685 -58324487 - B1F SINE Alu -4 145 19 8 1086 222 37 0 0 chr9 65751727 65751754 -58324418 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1086 1154 75 43 6 chr9 65751776 65751937 -58324235 - B2_Mm2 SINE B2 -28 167 1 8 1086 554 246 118 14 chr9 65752114 65752258 -58323914 - RSINE1 SINE B4 -5 160 2 8 1086 791 166 21 21 chr9 65752348 65752490 -58323682 - B1_Mur4 SINE Alu -8 142 1 8 1086 195 100 0 0 chr9 65752566 65752596 -58323576 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1086 233 257 95 0 chr9 65752816 65752890 -58323282 - L3 LINE CR1 -294 4195 4115 8 1086 286 285 44 0 chr9 65753228 65753312 -58322860 - B1F SINE Alu -21 99 7 8 1086 1026 127 44 0 chr9 65753354 65753512 -58322660 + B2_Mm1t SINE B2 1 165 -28 8 1086 207 0 0 0 chr9 65753522 65753545 -58322627 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 8 1086 1028 46 7 14 chr9 65753551 65753692 -58322480 + B1_Mus1 SINE Alu 2 147 -1 8 1086 236 57 91 36 chr9 65753812 65753867 -58322305 + B2_Mm2 SINE B2 137 194 -1 8 1086 396 321 18 30 chr9 65754022 65754186 -58321986 + RSINE1 SINE B4 4 165 0 8 1086 1110 68 7 20 chr9 65754323 65754472 -58321700 + B1_Mus1 SINE Alu 2 148 0 8 1086 1458 67 10 5 chr9 65754497 65754691 -58321481 + B2_Mm2 SINE B2 1 195 0 8 1086 300 27 0 0 chr9 65755068 65755105 -58321067 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1086 601 208 22 30 chr9 65755452 65755586 -58320586 + B1_Mur1 SINE Alu 11 143 -6 8 1086 267 296 91 10 chr9 65755756 65755855 -58320317 - PB1D10 SINE Alu -8 109 3 8 1086 351 241 0 12 chr9 65755881 65755961 -58320211 - ID4 SINE ID -2 81 3 8 1086 219 69 0 0 chr9 65756190 65756219 -58319953 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1086 218 216 20 0 chr9 65756819 65756870 -58319302 + CT-rich Low_complexity Low_complexity 3 54 0 8 1086 210 71 0 0 chr9 65757021 65757049 -58319123 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1086 299 245 118 36 chr9 65758057 65758167 -58318005 + MIRb SINE MIR 20 138 -130 8 1086 299 44 22 0 chr9 65758366 65758411 -58317761 + (TTG)n Simple_repeat Simple_repeat 3 48 0 8 1086 264 30 0 0 chr9 65758413 65758446 -58317726 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1086 746 112 9 0 chr9 65758446 65758562 -58317610 - B1_Mur4 SINE Alu -33 117 1 8 1086 540 234 32 65 chr9 65758562 65758602 -58317570 - B4 SINE B4 -203 89 55 8 1086 313 303 73 9 chr9 65758947 65759057 -58317115 - PB1D10 SINE Alu 0 117 1 8 1086 856 163 21 0 chr9 65759221 65759362 -58316810 - B1_Mur3 SINE Alu -1 148 5 8 1086 695 284 0 0 chr9 65759412 65759553 -58316619 - B1_Mur1 SINE Alu 0 149 9 8 1086 762 172 313 0 chr9 65759624 65759787 -58316385 - B3 SINE B2 -2 214 1 8 1086 1053 48 6 99 chr9 65759884 65760046 -58316126 - B1_Mus2 SINE Alu 0 147 1 8 1086 25 83 0 0 chr9 65760806 65760866 -58315306 + AT_rich Low_complexity Low_complexity 1 60 0 8 1086 437 288 33 33 chr9 65761352 65761474 -58314698 - B1F2 SINE Alu -25 124 3 8 1086 517 274 9 0 chr9 65761372 65761478 -58314694 - ID_B1 SINE B4 -38 186 80 8 1086 261 0 0 0 chr9 65762107 65762136 -58314036 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1086 803 80 0 9 chr9 65762808 65762921 -58313251 - B1_Mus1 SINE Alu -8 140 29 8 1086 341 245 246 21 chr9 65762921 65763063 -58313109 - L1MC2 LINE L1 -10 6334 6161 8 1086 641 200 96 0 chr9 65763156 65763281 -58312891 - B1_Mur1 SINE Alu -6 143 7 8 1086 738 87 0 0 chr9 65763290 65763393 -58312779 + (TTTCC)n Simple_repeat Simple_repeat 3 105 0 8 1086 490 273 31 132 chr9 65763440 65763515 -58312657 - B4A SINE B4 -6 286 232 8 1086 989 192 57 0 chr9 65763515 65763708 -58312464 - B3 SINE B2 -10 206 3 8 1086 490 273 31 132 chr9 65763708 65763860 -58312312 - B4A SINE B4 -61 231 82 8 1086 532 233 35 0 chr9 65763862 65763978 -58312194 - PB1D9 SINE Alu 0 120 1 8 1086 321 279 189 21 chr9 65763978 65764007 -58312165 - B4A SINE B4 -182 110 58 8 1086 270 56 0 0 chr9 65764122 65764158 -58312014 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 8 1086 1060 52 0 49 chr9 65764158 65764301 -58311871 - B1_Mus1 SINE Alu -12 136 1 8 1086 504 132 60 0 chr9 65764431 65764514 -58311658 + B1_Mur1 SINE Alu 62 149 0 8 1086 810 246 0 0 chr9 65764551 65764693 -58311479 - RSINE1 SINE B4 -20 145 4 8 1086 23 33 0 0 chr9 65764695 65764725 -58311447 + AT_rich Low_complexity Low_complexity 1 30 0 8 1086 794 219 54 16 chr9 65764728 65764914 -58311258 + B3A SINE B2 1 193 -5 8 1086 335 297 34 68 chr9 65764931 65765079 -58311093 - RSINE1 SINE B4 0 165 23 8 1086 1361 77 22 6 chr9 65765101 65765284 -58310888 + B2_Mm2 SINE B2 1 186 -9 8 1086 1155 124 16 31 chr9 65765295 65765450 -58310722 + B2_Mm2 SINE B2 2 155 -40 8 1086 288 70 0 0 chr9 65765450 65765493 -58310679 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 8 1086 1155 124 16 31 chr9 65765493 65765528 -58310644 + B2_Mm2 SINE B2 156 189 -6 8 1086 775 236 42 5 chr9 65765580 65765772 -58310400 - B3 SINE B2 -15 201 3 8 1086 326 304 79 0 chr9 65765780 65765994 -58310178 - L1MC LINE L1 -984 5162 4932 8 1086 492 18 0 0 chr9 65766342 65766399 -58309773 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 8 1086 225 0 0 0 chr9 65766399 65766423 -58309749 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1086 1090 93 0 0 chr9 65766423 65766562 -58309610 - B1_Mus1 SINE Alu -9 139 1 9 1086 808 206 0 0 chr9 65766581 65766722 -58309450 - B1_Mus1 SINE Alu -6 142 2 9 1086 1229 28 0 7 chr9 65766763 65766909 -58309263 - B1_Mus2 SINE Alu -1 146 2 9 1086 655 226 118 6 chr9 65766920 65767098 -58309074 - ID_B1 SINE B4 -7 217 20 9 1086 298 359 33 41 chr9 65767311 65767433 -58308739 + RSINE1 SINE B4 45 165 0 9 1086 22 70 0 0 chr9 65767440 65767483 -58308689 + AT_rich Low_complexity Low_complexity 1 43 0 9 1086 225 351 79 36 chr9 65767484 65767623 -58308549 - MIR3 SINE MIR -26 182 38 9 1086 564 311 41 12 chr9 65767730 65767899 -58308273 + B3A SINE B2 1 174 -24 9 1086 237 263 0 0 chr9 65767932 65767989 -58308183 + T-rich Low_complexity Low_complexity 1 57 0 9 1086 591 200 0 0 chr9 65767989 65768094 -58308078 - PB1D9 SINE Alu 0 120 16 9 1086 300 263 65 102 chr9 65768024 65768163 -58308009 - MT2B LTR ERVL -344 240 107 9 1086 344 337 41 0 chr9 65769062 65769183 -58306989 - PB1D10 SINE Alu -12 135 1 9 1086 235 323 69 109 chr9 65769183 65769209 -58306963 - MT2B2 LTR ERVL -425 159 141 9 1086 325 307 135 45 chr9 65769209 65769342 -58306830 + RSINE1 SINE B4 1 145 -20 9 1086 22 0 0 0 chr9 65769459 65769481 -58306691 + AT_rich Low_complexity Low_complexity 1 22 0 9 1086 344 184 118 0 chr9 65769481 65769557 -58306615 - B1_Mur4 SINE Alu -4 146 62 9 1086 201 254 0 15 chr9 65769681 65769749 -58306423 + A-rich Low_complexity Low_complexity 2 68 0 9 1086 252 0 0 0 chr9 65769778 65769806 -58306366 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1086 601 200 64 36 chr9 65769806 65769938 -58306234 - B1_Mur4 SINE Alu -13 137 1 9 1086 216 0 0 0 chr9 65770084 65770108 -58306064 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1086 549 208 152 0 chr9 65770203 65770328 -58305844 - B1F1 SINE Alu 0 149 6 9 1086 279 231 113 19 chr9 65770235 65770341 -58305831 - MT2B LTR ERVL -332 269 154 9 1086 261 156 89 0 chr9 65770347 65770392 -58305780 + MER5A DNA MER1_type 27 75 -114 9 1086 312 27 0 0 chr9 65770442 65770479 -58305693 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1086 219 167 0 0 chr9 65770481 65770523 -58305649 + GA-rich Low_complexity Low_complexity 4 45 0 9 1086 364 250 142 9 chr9 65770875 65771093 -58305079 - L1M4 LINE L1 -3214 2926 2680 9 1086 822 258 6 12 chr9 65771097 65771262 -58304910 + RSINE1 SINE B4 2 165 0 9 1086 24 0 0 0 chr9 65771275 65771299 -58304873 + AT_rich Low_complexity Low_complexity 1 24 0 9 1086 279 0 0 0 chr9 65771614 65771645 -58304527 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1086 198 0 0 0 chr9 65772358 65772380 -58303792 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1086 1174 54 0 0 chr9 65772384 65772532 -58303640 - B1_Mus1 SINE Alu 0 148 1 9 1086 747 279 40 32 chr9 65773009 65773287 -58302885 - B4A SINE B4 -12 280 1 9 1086 25 51 0 0 chr9 65773316 65773355 -58302817 + AT_rich Low_complexity Low_complexity 1 39 0 9 1086 23 78 0 0 chr9 65773457 65773508 -58302664 + AT_rich Low_complexity Low_complexity 1 51 0 9 1086 653 144 29 0 chr9 65773678 65773782 -58302390 - B1_Mur3 SINE Alu -2 147 41 9 1086 235 258 15 15 chr9 65773940 65774007 -58302165 - B4 SINE B4 -6 286 220 9 1086 183 42 0 0 chr9 65774010 65774034 -58302138 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1086 731 209 81 7 chr9 65774047 65774196 -58301976 - B3A SINE B2 -24 174 15 9 1086 784 196 54 18 chr9 65774205 65774371 -58301801 - B3A SINE B2 0 198 27 9 1086 332 205 231 33 chr9 65774389 65774480 -58301692 - PB1D9 SINE Alu -10 110 2 9 1086 867 242 43 48 chr9 65774508 65774716 -58301456 - B3 SINE B2 -9 207 1 9 1086 327 262 155 113 chr9 65774716 65774738 -58301434 - B2_Mm2 SINE B2 -14 181 164 9 1086 640 234 28 0 chr9 65774738 65774879 -58301293 - B1_Mur1 SINE Alu -2 147 3 9 1086 467 262 155 113 chr9 65774879 65775024 -58301148 - B3A SINE B2 -32 163 7 9 1086 714 257 61 84 chr9 65774953 65775250 -58300922 - B4A SINE B4 0 292 3 9 1086 405 0 0 0 chr9 65775482 65775527 -58300645 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1086 1168 74 0 0 chr9 65775599 65775747 -58300425 - B1_Mus1 SINE Alu 0 148 1 9 1086 234 288 0 0 chr9 65775794 65775853 -58300319 - B1F1 SINE Alu -29 120 62 9 1086 321 254 0 82 chr9 65775836 65775909 -58300263 - ID4_ SINE ID -16 67 1 9 1086 1400 70 27 0 chr9 65776019 65776205 -58299967 - B2_Mm1t SINE B2 0 193 3 9 1086 219 186 0 0 chr9 65776621 65776664 -58299508 + T-rich Low_complexity Low_complexity 2 44 0 9 1086 966 129 14 0 chr9 65776667 65776806 -58299366 - B1_Mur4 SINE Alu -7 143 3 9 1086 259 222 93 0 chr9 65777171 65777225 -58298947 + B1F2 SINE Alu 23 81 -68 9 1086 717 266 69 0 chr9 65777248 65777421 -58298751 + B3 SINE B2 1 185 -31 9 1086 1817 149 24 7 chr9 65777428 65777725 -58298447 - ORR1A4 LTR MaLR -27 302 1 9 1086 253 311 142 8 chr9 65777872 65777992 -58298180 + B1F SINE Alu 1 136 -13 9 1086 458 61 0 29 chr9 65778358 65778426 -58297746 + B1_Mus2 SINE Alu 82 147 0 9 1086 312 357 97 28 chr9 65778769 65778945 -58297227 - MER5A DNA MER1_type -1 188 1 9 1086 1220 22 0 0 chr9 65778950 65779088 -58297084 + B1_Mus1 SINE Alu 2 139 -9 9 1086 206 32 0 31 chr9 65779088 65779120 -58297052 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1086 699 263 0 28 chr9 65779202 65779343 -58296829 - B1_Mur1 SINE Alu -7 142 6 9 1086 242 308 26 78 chr9 65779350 65779362 -58296810 - ID_B1 SINE B4 -11 213 104 9 1086 338 283 19 48 chr9 65779362 65779466 -58296706 - B1F2 SINE Alu -26 123 23 9 1086 333 0 0 0 chr9 65779489 65779526 -58296646 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1086 183 100 0 0 chr9 65779528 65779558 -58296614 + (CAGAGA)n Simple_repeat Simple_repeat 1 30 0 9 1086 342 0 0 0 chr9 65779561 65779599 -58296573 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 9 1086 683 239 0 0 chr9 65779599 65779729 -58296443 - B1_Mur3 SINE Alu -19 130 1 9 1086 306 164 0 0 chr9 65779729 65779784 -58296388 + T-rich Low_complexity Low_complexity 1 55 0 9 1086 435 216 34 11 chr9 65779793 65779882 -58296290 - PB1D9 SINE Alu -7 113 23 9 1086 282 253 71 81 chr9 65779809 65779908 -58296264 - MT2B LTR ERVL -350 251 154 9 1086 267 299 110 43 chr9 65779908 65779973 -58296199 - B4 SINE B4 -105 187 13 9 1086 2091 126 0 55 chr9 65779981 65780326 -58295846 - ORR1A3 LTR MaLR 0 326 1 9 1086 813 299 24 16 chr9 65780690 65781061 -58295111 - L1MA4 LINE L1 -209 5971 5603 9 1086 333 290 161 16 chr9 65781107 65781293 -58294879 - ID_B1 SINE B4 -7 217 5 9 1086 274 257 176 0 chr9 65781369 65781443 -58294729 - PB1D10 SINE Alu -28 89 3 9 1086 441 54 0 0 chr9 65781523 65781579 -58294593 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1086 305 174 14 28 chr9 65781597 65781668 -58294504 - B1_Mus2 SINE Alu -1 146 77 9 1086 681 272 25 61 chr9 65781862 65781944 -58294228 + B3 SINE B2 15 93 -123 9 1086 1910 164 126 45 chr9 65781944 65782365 -58293807 - RLTR31_Mm LTR ERVK -2 559 98 9 1086 459 0 0 0 chr9 65782365 65782416 -58293756 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 1086 1910 164 126 45 chr9 65782416 65782511 -58293661 - RLTR31_Mm LTR ERVK -464 97 3 9 1086 681 272 25 61 chr9 65782511 65782624 -58293548 + B3 SINE B2 94 203 -13 9 1086 432 205 177 9 chr9 65782685 65782798 -58293374 + ID_B1 SINE B4 93 224 0 9 1086 539 127 134 8 chr9 65782838 65782957 -58293215 - B2_Mm2 SINE B2 -5 190 57 9 1086 815 143 68 0 chr9 65783013 65783146 -58293026 - B1_Mur4 SINE Alu 0 150 9 9 1086 320 219 90 40 chr9 65783060 65783160 -58293012 - MT2B LTR ERVL -346 255 151 9 1086 630 232 36 0 chr9 65783280 65783418 -58292754 - B1_Mur2 SINE Alu -5 144 2 9 1086 293 241 125 12 chr9 65783491 65783571 -58292601 + PB1D10 SINE Alu 14 102 -15 9 1086 23 0 0 0 chr9 65783810 65783833 -58292339 + AT_rich Low_complexity Low_complexity 1 23 0 9 1086 477 301 16 31 chr9 65784056 65784183 -58291989 + PB1 SINE Alu 1 125 -2 9 1086 489 296 0 50 chr9 65784206 65784327 -58291845 - RSINE1 SINE B4 0 165 51 9 1086 225 73 68 68 chr9 65784299 65784343 -58291829 - B4 SINE B4 -215 77 34 9 1086 554 257 39 19 chr9 65784491 65784646 -58291526 - RSINE1 SINE B4 -4 161 4 9 1086 316 222 32 0 chr9 65784647 65784710 -58291462 + ID4_ SINE ID 19 83 0 9 1086 526 233 60 8 chr9 65784778 65784912 -58291260 + B1_Mur2 SINE Alu 2 142 -7 9 1086 567 209 34 48 chr9 65785914 65786060 -58290112 - ID_B1 SINE B4 0 224 81 9 1086 251 213 148 0 chr9 65786062 65786123 -58290049 - PB1D10 SINE Alu 0 117 48 9 1086 822 175 28 7 chr9 65786316 65786460 -58289712 - B1_Mur1 SINE Alu 0 149 3 9 1086 236 354 17 42 chr9 65786909 65787027 -58289145 + ID_B1 SINE B4 82 196 -28 9 1086 294 283 141 0 chr9 65787482 65787574 -58288598 - PB1D10 SINE Alu -8 109 5 9 1086 747 189 68 0 chr9 65787882 65788014 -58288158 - B1_Mur4 SINE Alu -8 142 2 9 1086 277 254 0 0 chr9 65788189 65788244 -58287928 + ID_B1 SINE B4 149 203 -21 9 1086 219 88 0 0 chr9 65788246 65788280 -58287892 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 1086 291 157 0 0 chr9 65788347 65788398 -58287774 + T-rich Low_complexity Low_complexity 1 51 0 1 1086 399 290 23 31 chr9 65788398 65788526 -58287646 - B1_Mus1 SINE Alu -21 127 1 1 1086 839 162 0 14 chr9 65788575 65788710 -58287462 + B1_Mus1 SINE Alu 3 136 -12 1 1086 231 36 0 0 chr9 65788710 65788738 -58287434 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1086 321 159 0 0 chr9 65788761 65788824 -58287348 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1086 2021 121 34 34 chr9 65789040 65789450 -58286722 - RMER17C LTR ERVK 0 410 1 1 1086 39128 3 0 0 chr9 65789484 65794826 -58281346 - L1Md_A LINE L1 0 6582 1242 1 1086 216 0 0 0 chr9 65795050 65795074 -58281098 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1086 314 203 0 15 chr9 65795074 65795129 -58281043 - B1_Mur1 SINE Alu -30 119 65 1 1086 470 201 67 0 chr9 65795474 65795598 -58280574 - B1F2 SINE Alu -8 141 1 1 1086 1254 156 194 131 chr9 65795700 65796134 -58280038 - RMER6B LTR ERVK 0 461 1 1 1086 945 235 15 26 chr9 65796143 65796360 -58279812 + B3 SINE B2 3 216 0 1 1086 606 271 0 0 chr9 65796489 65796607 -58279565 + B1F1 SINE Alu 1 118 -31 1 1086 514 240 62 31 chr9 65796611 65796740 -58279432 + B1_Mur3 SINE Alu 1 133 -16 1 1086 230 328 0 16 chr9 65796803 65796865 -58279307 + ID4_ SINE ID 4 64 -19 1 1086 319 318 57 69 chr9 65796885 65797044 -58279128 + RSINE1 SINE B4 3 159 -6 1 1086 1189 62 0 0 chr9 65797071 65797217 -58278955 - B1_Mus2 SINE Alu 0 147 2 1 1086 304 304 70 23 chr9 65797307 65797479 -58278693 + YREP_Mm Unknown Unknown 135 314 -1498 1 1086 735 279 21 16 chr9 65797357 65797550 -58278622 - ID_B1 SINE B4 -18 206 13 1 1087 265 263 35 0 chr9 65798440 65798497 -58277675 - ID4 SINE ID -10 73 15 1 1087 3036 220 181 14 chr9 65798636 65799515 -58276657 - RMER1A Other Other -2 1028 3 1 1087 311 238 39 19 chr9 65799595 65799698 -58276474 - RMER1A Other Other -925 105 1 1 1087 949 234 185 22 chr9 65799668 65799987 -58276185 - RMER1B Other Other -651 415 45 1 1087 28 48 0 0 chr9 65800821 65800863 -58275309 + AT_rich Low_complexity Low_complexity 1 42 0 1 1087 233 265 0 0 chr9 65800866 65800915 -58275257 + ID4_ SINE ID 15 63 -20 1 1087 256 252 48 19 chr9 65800962 65801067 -58275105 + L1MC LINE L1 4773 4880 -1266 1 1087 265 186 10 173 chr9 65801164 65801268 -58274904 + MT2B LTR ERVL 158 244 -357 1 1087 517 165 20 40 chr9 65801175 65801276 -58274896 + PB1D9 SINE Alu 1 99 -21 1 1087 405 227 129 90 chr9 65801271 65801426 -58274746 + B3A SINE B2 26 186 -12 1 1087 243 254 147 15 chr9 65801422 65801490 -58274682 + B3A SINE B2 122 198 0 1 1087 255 274 65 0 chr9 65801637 65801699 -58274473 + B4A SINE B4 27 92 -200 1 1087 1159 43 0 0 chr9 65801700 65801838 -58274334 + B1_Mus1 SINE Alu 1 138 -10 1 1087 347 0 23 0 chr9 65801838 65801881 -58274291 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1087 914 117 80 0 chr9 65801905 65802042 -58274130 + B2_Mm2 SINE B2 1 148 -47 1 1087 279 0 0 0 chr9 65802042 65802073 -58274099 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1087 471 212 189 24 chr9 65802206 65802375 -58273797 + B3A SINE B2 2 198 0 1 1087 851 147 36 7 chr9 65802411 65802548 -58273624 + B1_Mur4 SINE Alu 9 149 -1 1 1087 416 297 18 0 chr9 65802689 65802800 -58273372 - ID_B1 SINE B4 -7 217 105 1 1087 225 0 0 0 chr9 65803043 65803068 -58273104 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1087 675 184 73 7 chr9 65803069 65803199 -58272973 + B1_Mus1 SINE Alu 1 139 -9 1 1087 207 0 0 0 chr9 65803199 65803222 -58272950 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1087 273 270 48 0 chr9 65803959 65804022 -58272150 + PB1D9 SINE Alu 1 66 -54 1 1087 754 277 214 72 chr9 65804129 65804417 -58271755 - MER21B LTR ERV1 -53 810 502 1 1087 967 112 0 20 chr9 65804417 65804563 -58271609 + B1_Mus2 SINE Alu 1 143 -4 1 1087 754 277 214 72 chr9 65804563 65804745 -58271427 - MER21B LTR ERV1 -362 501 273 1 1087 183 129 0 0 chr9 65805345 65805376 -58270796 + (TTCCC)n Simple_repeat Simple_repeat 3 33 0 1 1087 198 0 0 0 chr9 65805407 65805429 -58270743 + (TCCCC)n Simple_repeat Simple_repeat 3 24 0 1 1087 336 247 151 0 chr9 65805444 65805537 -58270635 - B1_Mus1 SINE Alu -37 111 5 1 1087 41 21 0 0 chr9 65806739 65806787 -58269385 + AT_rich Low_complexity Low_complexity 1 48 0 1 1087 533 224 152 0 chr9 65806788 65806913 -58269259 - B1_Mm SINE Alu -3 144 1 1 1087 380 232 21 21 chr9 65806826 65806923 -58269249 - MT2B2 LTR ERVL -333 251 155 1 1087 408 348 22 0 chr9 65806933 65807071 -58269101 - B1F1 SINE Alu -8 141 1 1 1087 503 216 20 144 chr9 65807210 65807356 -58268816 - B1F2 SINE Alu -1 148 21 1 1087 855 240 0 27 chr9 65807461 65807649 -58268523 - B3A SINE B2 -15 183 1 1 1087 188 34 0 33 chr9 65808369 65808399 -58267773 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1087 713 192 24 8 chr9 65808467 65808606 -58267566 + B1_Mus1 SINE Alu 6 142 -6 1 1087 376 331 6 105 chr9 65808902 65808921 -58267251 - RSINE1 SINE B4 0 165 147 1 1087 306 0 0 0 chr9 65808921 65808955 -58267217 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1087 376 331 6 105 chr9 65808955 65809097 -58267075 - RSINE1 SINE B4 -19 146 20 1 1087 278 324 38 0 chr9 65809180 65809285 -58266887 - ID_B1 SINE B4 0 224 116 1 1087 248 291 0 0 chr9 65809528 65809583 -58266589 - B1F1 SINE Alu -93 56 2 1 1087 230 356 98 26 chr9 65809605 65809758 -58266414 - L2c LINE L2 -14 3373 3210 1 1087 469 264 209 0 chr9 65810227 65810390 -58265782 + B3 SINE B2 1 197 -19 1 1087 456 200 0 0 chr9 65810400 65810500 -58265672 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 1 1087 880 121 0 21 chr9 65810890 65811034 -58265138 + B1_Mur3 SINE Alu 9 149 0 1 1087 664 288 34 19 chr9 65811088 65811286 -58264886 + B3A SINE B2 3 198 -18 1 1087 1417 279 71 8 chr9 65811481 65811973 -58264199 - Lx8 LINE L1 -451 7022 6500 1 1087 206 308 0 0 chr9 65812053 65812105 -58264067 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1087 432 296 14 94 chr9 65812227 65812365 -58263807 + B3A SINE B2 3 129 -69 1 1087 351 0 0 0 chr9 65812381 65812420 -58263752 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1087 437 258 151 21 chr9 65812436 65812674 -58263498 + L1M4 LINE L1 5315 5583 -595 1 1087 622 163 20 112 chr9 65813128 65813196 -58262976 + URR1B DNA MER1_type 86 155 -70 1 1087 1413 56 44 0 chr9 65813196 65813376 -58262796 + B2_Mm2 SINE B2 1 188 -7 1 1087 622 163 20 112 chr9 65813376 65813459 -58262713 + URR1B DNA MER1_type 156 223 -2 1 1087 286 222 0 27 chr9 65813509 65813583 -58262589 + ID4 SINE ID 1 72 -11 1 1087 608 105 0 50 chr9 65813610 65813710 -58262462 - B1_Mur4 SINE Alu -16 134 40 1 1087 297 0 0 0 chr9 65813711 65813744 -58262428 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1087 603 250 12 159 chr9 65813986 65814106 -58262066 + ID_B1 SINE B4 1 215 -9 1 1087 970 91 15 0 chr9 65814106 65814238 -58261934 + B1_Mus1 SINE Alu 6 139 -9 1 1087 234 0 0 0 chr9 65814238 65814264 -58261908 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1087 539 264 54 8 chr9 65814364 65814494 -58261678 + ID_B1 SINE B4 81 216 -8 1 1087 492 167 0 0 chr9 65814524 65814596 -58261576 + ID4_ SINE ID 12 83 0 1 1087 292 298 12 12 chr9 65814526 65814611 -58261561 + B4 SINE B4 14 98 -194 1 1087 633 220 179 34 chr9 65814638 65814817 -58261355 - B3 SINE B2 -10 206 2 1 1087 935 102 132 46 chr9 65814837 65815011 -58261161 - B2_Mm2 SINE B2 -3 192 4 1 1087 2874 20 60 6 chr9 65815040 65815393 -58260779 + L1Md_F3 LINE L1 6199 6570 -14 1 1087 249 33 0 0 chr9 65815688 65815718 -58260454 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1087 462 264 109 45 chr9 65815730 65815885 -58260287 - B3A SINE B2 -54 162 1 1 1087 419 248 104 15 chr9 65816590 65816725 -58259447 - RSINE1 SINE B4 -17 148 2 1 1087 272 307 76 38 chr9 65816949 65817081 -58259091 - RMER15 LTR ERVL -17 558 422 1 1087 22 0 0 0 chr9 65817453 65817475 -58258697 + AT_rich Low_complexity Low_complexity 1 22 0 1 1087 242 310 180 0 chr9 65817652 65817752 -58258420 - PB1D9 SINE Alu -1 119 2 1 1087 284 286 33 0 chr9 65817889 65817980 -58258192 - MIRc SINE MIR 0 268 175 1 1087 264 314 52 88 chr9 65818321 65818352 -58257820 - ORR1E LTR MaLR -165 194 163 1 1087 315 0 0 0 chr9 65818352 65818387 -58257785 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 1 1087 264 314 52 88 chr9 65818387 65818491 -58257681 - ORR1E LTR MaLR -197 162 64 1 1087 192 294 0 56 chr9 65818599 65818653 -58257519 - MIRm SINE MIR -18 258 208 1 1087 522 0 0 0 chr9 65818709 65818767 -58257405 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1087 387 296 11 0 chr9 65818877 65818965 -58257207 + PB1D7 SINE Alu 19 107 -13 1 1087 708 12 0 0 chr9 65818968 65819049 -58257123 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 1 1087 412 256 120 0 chr9 65819051 65819176 -58256996 + B1_Mur1 SINE Alu 4 143 -6 1 1087 289 258 0 43 chr9 65819344 65819413 -58256759 + ID4_ SINE ID 3 68 -15 1 1087 586 216 7 54 chr9 65819816 65819963 -58256209 - B1_Mur1 SINE Alu -5 144 5 1 1087 563 206 0 10 chr9 65820839 65820937 -58255235 - ID_B1 SINE B4 -9 215 119 1 1087 637 233 37 60 chr9 65821633 65821663 -58254509 - B3 SINE B2 -6 210 181 1 1087 198 0 0 0 chr9 65821663 65821685 -58254487 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1087 637 233 37 60 chr9 65821685 65821869 -58254303 - B3 SINE B2 -36 180 1 1 1087 965 136 178 0 chr9 65821959 65822150 -58254022 - URR1B DNA MER1_type 0 225 1 1 1087 367 220 261 8 chr9 65822233 65822352 -58253820 - B1_Mur3 SINE Alu 0 149 1 1 1087 520 133 44 11 chr9 65822436 65822527 -58253645 + B1_Mur2 SINE Alu 43 136 -13 1 1087 204 40 0 0 chr9 65822528 65822553 -58253619 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1087 345 261 43 0 chr9 65822885 65822977 -58253195 - ID_B1 SINE B4 -7 217 122 1 1087 466 281 5 12 chr9 65822980 65823099 -58253073 - PB1D7 SINE Alu 0 120 1 1 1087 342 247 88 88 chr9 65823357 65823459 -58252713 + PB1D10 SINE Alu 15 116 -1 1 1087 225 286 0 0 chr9 65823601 65823650 -58252522 + ID4_ SINE ID 2 50 -33 1 1087 559 146 83 46 chr9 65823948 65824056 -58252116 - B1_Mus2 SINE Alu 0 147 36 1 1087 379 247 0 47 chr9 65824173 65824258 -58251914 + RSINE1 SINE B4 18 98 -67 1 1087 1183 68 0 0 chr9 65824261 65824408 -58251764 + B1_Mus1 SINE Alu 2 148 0 1 1087 406 250 179 12 chr9 65824575 65824698 -58251474 + B3A SINE B2 1 152 -64 1 1087 492 59 0 0 chr9 65824698 65824766 -58251406 + (CATA)n Simple_repeat Simple_repeat 3 70 0 1 1087 309 288 221 57 chr9 65824766 65824782 -58251390 + B3 SINE B2 153 163 -53 1 1087 367 266 43 60 chr9 65824797 65824820 -58251352 + ID SINE ID 63 83 -141 1 1087 287 319 122 17 chr9 65824820 65824935 -58251237 + PB1 SINE Alu 1 127 0 1 1087 1238 102 42 26 chr9 65824936 65825128 -58251044 + B2_Mm2 SINE B2 1 195 0 1 1087 669 238 0 0 chr9 65825147 65825273 -58250899 + ID_B1 SINE B4 99 224 0 1 1087 242 212 47 0 chr9 65825788 65825873 -58250299 + L1MA5 LINE L1 6102 6190 -110 1 1087 556 275 25 8 chr9 65825873 65825994 -58250178 + ID_B1 SINE B4 8 130 -94 1 1087 486 0 0 0 chr9 65826032 65826086 -58250086 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 1 1087 500 214 112 0 chr9 65826088 65826186 -58249986 - ID_B1 SINE B4 -6 218 110 1 1087 1748 10 0 0 chr9 65826337 65826530 -58249642 + B2_Mm1a SINE B2 1 193 0 1 1087 254 321 67 67 chr9 65826571 65826691 -58249481 - PB1D7 SINE Alu 0 120 1 1 1087 233 161 212 177 chr9 65826749 65826862 -58249310 - PB1D9 SINE Alu -1 119 3 1 1087 489 267 8 19 chr9 65827137 65827270 -58248902 - B1F SINE Alu -2 147 2 1 1087 315 0 0 0 chr9 65827449 65827484 -58248688 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1087 628 186 26 9 chr9 65827625 65827739 -58248433 + PB1D9 SINE Alu 4 119 -1 1 1087 314 291 52 66 chr9 65827939 65827971 -58248201 + MT2B LTR ERVL 132 161 -440 1 1087 450 202 69 103 chr9 65827971 65828087 -58248085 + B1F1 SINE Alu 1 112 -8 1 1087 236 289 84 53 chr9 65828288 65828383 -58247789 + B1_Mm SINE Alu 1 98 -49 1 1087 1360 148 0 28 chr9 65829235 65829450 -58246722 + B3 SINE B2 2 210 -6 1 1087 329 318 12 0 chr9 65829959 65830044 -58246128 - PB1D10 SINE Alu -31 86 1 1 1087 322 221 30 140 chr9 65829966 65830066 -58246106 - B4A SINE B4 -133 159 71 1 1087 323 331 13 111 chr9 65830113 65830266 -58245906 - B1_Mus1 SINE Alu -10 138 1 1 1087 384 304 0 11 chr9 65830497 65830595 -58245577 + PB1 SINE Alu 1 87 -40 1 1087 239 310 17 0 chr9 65830616 65830674 -58245498 + tRNA-Ala-GCA tRNA tRNA 6 64 -11 1 1087 369 0 0 0 chr9 65831119 65831160 -58245012 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1087 977 216 56 15 chr9 65831355 65831552 -58244620 - B3 SINE B2 -11 205 1 1 1087 221 250 13 0 chr9 65831578 65831654 -58244518 + CT-rich Low_complexity Low_complexity 3 79 0 1 1087 378 0 0 0 chr9 65831658 65831700 -58244472 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1087 381 259 87 22 chr9 65831707 65831845 -58244327 - B1F SINE Alu -2 147 1 1 1087 1571 32 27 0 chr9 65831992 65832179 -58243993 - B2_Mm1t SINE B2 0 193 2 1 1087 1024 122 0 0 chr9 65832182 65832330 -58243842 - B1_Mus1 SINE Alu 0 148 1 1 1087 1201 72 48 12 chr9 65832376 65832544 -58243628 - B2_Mm2 SINE B2 -18 177 4 1 1087 376 123 18 0 chr9 65832544 65832601 -58243571 - URR1B DNA MER1_type -21 204 147 1 1087 1040 236 24 19 chr9 65833077 65833289 -58242883 + B3 SINE B2 2 214 -2 1 1087 185 83 0 27 chr9 65833295 65833332 -58242840 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1087 1231 62 14 0 chr9 65833335 65833479 -58242693 + B1_Mus2 SINE Alu 2 147 0 1 1087 192 40 0 0 chr9 65833481 65833506 -58242666 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1087 353 202 98 23 chr9 65833523 65833655 -58242517 + MER33 DNA MER1_type 162 303 -21 1 1087 409 267 139 0 chr9 65833659 65833760 -58242412 + ID_B1 SINE B4 90 204 -20 1 1087 225 0 0 0 chr9 65833764 65833789 -58242383 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1087 1247 55 14 0 chr9 65833817 65833962 -58242210 + B1_Mus1 SINE Alu 2 148 0 1 1087 230 0 0 32 chr9 65833966 65833997 -58242175 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1087 486 0 0 0 chr9 65834025 65834079 -58242093 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1087 344 119 17 0 chr9 65834223 65834282 -58241890 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 1 1087 446 269 0 78 chr9 65834295 65834424 -58241748 - PB1D9 SINE Alu -1 119 1 1 1087 589 240 194 38 chr9 65834428 65834614 -58241558 - B3 SINE B2 -1 215 1 1 1087 815 246 118 0 chr9 65834680 65834867 -58241305 + B3 SINE B2 3 211 -5 1 1087 1155 61 0 70 chr9 65835587 65835745 -58240427 + B1_Mus1 SINE Alu 2 148 0 1 1087 395 212 189 33 chr9 65836568 65836690 -58239482 - B1_Mur3 SINE Alu -7 142 2 1 1087 207 0 0 0 chr9 65837063 65837086 -58239086 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1087 1656 43 0 5 chr9 65837327 65837515 -58238657 - B2_Mm2 SINE B2 -8 187 1 1 1087 4167 116 16 37 chr9 65837525 65838150 -58238022 - Lx3C LINE L1 -8 6968 6357 1 1087 376 285 142 60 chr9 65838347 65838664 -58237508 + ORR1E LTR MaLR 1 343 -16 1 1087 534 309 85 52 chr9 65839004 65839216 -58236956 + Tigger7 DNA MER2_type 35 253 -2238 1 1087 227 299 120 30 chr9 65839492 65839592 -58236580 - PB1 SINE Alu -7 120 12 1 1087 231 326 32 32 chr9 65839519 65839614 -58236558 - ID_B1 SINE B4 -63 161 67 1 1087 356 197 28 0 chr9 65840348 65840419 -58235753 + B2_Mm2 SINE B2 2 74 -121 1 1087 279 0 0 0 chr9 65840443 65840474 -58235698 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1087 25 0 0 0 chr9 65840507 65840532 -58235640 + AT_rich Low_complexity Low_complexity 1 25 0 1 1087 1128 59 7 0 chr9 65840536 65840672 -58235500 + B1_Mus1 SINE Alu 2 138 -10 1 1087 270 0 0 0 chr9 65840672 65840702 -58235470 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1087 1363 78 10 30 chr9 65840706 65840787 -58235385 + B2_Mm2 SINE B2 1 79 -116 1 1087 3161 43 70 0 chr9 65840787 65841157 -58235015 - MTA_Mm LTR MaLR 0 396 1 1 1087 1363 78 10 30 chr9 65841157 65841274 -58234898 + B2_Mm2 SINE B2 80 195 0 1 1087 928 212 0 0 chr9 65841280 65841426 -58234746 + B1_Mur3 SINE Alu 3 148 -1 1 1087 223 196 98 0 chr9 65841550 65841601 -58234571 + B1F SINE Alu 69 124 -25 1 1087 360 0 0 0 chr9 65841640 65841680 -58234492 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1087 332 303 100 10 chr9 65841751 65841851 -58234321 - PB1D7 SINE Alu -1 119 11 1 1087 29 47 0 0 chr9 65841938 65841981 -58234191 + AT_rich Low_complexity Low_complexity 1 43 0 1 1087 480 286 55 16 chr9 65842451 65842579 -58233593 + B1F SINE Alu 1 133 -16 1 1087 249 108 0 0 chr9 65842606 65842643 -58233529 + (GGA)n Simple_repeat Simple_repeat 2 38 0 1 1087 300 308 150 0 chr9 65842644 65842777 -58233395 + HAL1-3A_ME LINE L1 2285 2437 -421 1 1087 222 289 0 0 chr9 65843613 65843658 -58232514 - MER5A DNA MER1_type -67 122 78 1 1087 422 306 104 45 chr9 65844838 65844992 -58231180 + B4A SINE B4 1 163 -129 1 1087 204 286 0 18 chr9 65844994 65845051 -58231121 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1087 792 213 114 26 chr9 65845648 65845841 -58230331 + B3 SINE B2 1 210 -6 1 1087 262 272 179 107 chr9 65845891 65845906 -58230266 + B4 SINE B4 71 117 -175 1 1087 295 227 104 83 chr9 65845906 65846002 -58230170 + MT2B LTR ERVL 167 264 -337 1 1087 683 159 0 26 chr9 65845921 65846037 -58230135 + B1_Mus2 SINE Alu 35 147 0 1 1087 262 272 179 107 chr9 65846002 65846031 -58230141 + B4 SINE B4 118 220 -72 1 1087 1242 62 0 0 chr9 65846247 65846393 -58229779 - B1_Mus1 SINE Alu -1 147 2 1 1087 739 249 32 70 chr9 65848688 65848874 -58227298 + B3A SINE B2 4 182 -16 1 1087 916 74 141 0 chr9 65848960 65849081 -58227091 + B1_Mus1 SINE Alu 2 139 -9 1 1087 627 191 156 16 chr9 65849126 65849254 -58226918 - B1_Mur1 SINE Alu -1 148 3 1 1087 376 340 19 9 chr9 65849297 65849404 -58226768 + PB1 SINE Alu 1 108 -19 1 1087 657 248 37 43 chr9 65849456 65849620 -58226552 + RSINE1 SINE B4 2 164 -1 1 1087 731 186 9 0 chr9 65849667 65849780 -58226392 + PB1D9 SINE Alu 2 115 -5 1 1087 1091 167 26 21 chr9 65850433 65850623 -58225549 + B3 SINE B2 1 191 -25 1 1087 231 146 0 0 chr9 65850867 65850908 -58225264 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1087 367 219 146 0 chr9 65850929 65851011 -58225161 - PB1D9 SINE Alu -13 107 14 1 1087 233 295 24 82 chr9 65850947 65851032 -58225140 - MT2B LTR ERVL -367 234 155 1 1087 677 271 14 7 chr9 65851038 65851179 -58224993 + B1_Mur1 SINE Alu 5 146 -3 1 1087 207 0 0 0 chr9 65851616 65851639 -58224533 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1087 1189 69 14 0 chr9 65851818 65851963 -58224209 + B1_Mus2 SINE Alu 1 147 0 1 1087 279 0 0 0 chr9 65851963 65851994 -58224178 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1087 180 312 42 21 chr9 65851998 65852093 -58224079 - MIR3 SINE MIR -5 203 107 1 1087 491 0 17 0 chr9 65852258 65852317 -58223855 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1087 643 257 0 33 chr9 65852792 65852945 -58223227 + B1F SINE Alu 2 149 0 1 1087 270 0 0 0 chr9 65853205 65853235 -58222937 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1087 325 245 0 28 chr9 65853251 65853360 -58222812 - Lx8 LINE L1 -65 7408 7303 1 1087 803 236 207 11 chr9 65853376 65853646 -58222526 - Lx8 LINE L1 -235 7238 6916 1 1087 719 239 50 6 chr9 65853658 65853839 -58222333 - Lx8 LINE L1 -620 6853 6665 1 1087 300 315 9 61 chr9 65853971 65853982 -58222190 + ID_B1 SINE B4 82 116 -108 1 1087 386 211 4 26 chr9 65853982 65854066 -58222106 + PB1D10 SINE Alu 9 93 -56 1 1087 300 315 9 61 chr9 65854066 65854086 -58222086 + ID_B1 SINE B4 117 190 -34 1 1087 490 243 39 0 chr9 65854143 65854246 -58221926 - PB1D9 SINE Alu -13 107 1 1 1087 399 248 134 27 chr9 65854301 65854413 -58221759 + ID_B1 SINE B4 99 222 -2 1 1087 1152 95 0 26 chr9 65854732 65854883 -58221289 + B1_Mus1 SINE Alu 2 148 0 1 1087 243 152 0 0 chr9 65854883 65854929 -58221243 + A-rich Low_complexity Low_complexity 1 46 0 1 1087 625 149 160 32 chr9 65854973 65855098 -58221074 + B1_Mur4 SINE Alu 5 145 -5 1 1087 767 37 269 0 chr9 65856261 65856369 -58219803 - B1_Mus2 SINE Alu -9 138 2 1 1087 697 233 21 67 chr9 65857587 65857780 -58218392 + B3A SINE B2 3 186 -12 1 1087 1104 188 69 10 chr9 65858559 65858763 -58217409 + B3 SINE B2 1 216 0 1 1087 981 206 114 0 chr9 65859117 65859301 -58216871 + B3 SINE B2 3 207 -9 1 1087 6384 106 36 23 chr9 65859328 65860244 -58215928 - Lx3C LINE L1 -1 6975 6044 1 1087 321 26 0 0 chr9 65860244 65860282 -58215890 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 1 1087 6384 106 36 23 chr9 65860282 65860306 -58215866 - Lx3C LINE L1 -933 6043 6023 1 1087 672 181 87 0 chr9 65860389 65860516 -58215656 - B1_Mur2 SINE Alu -6 143 6 1 1087 1013 131 0 0 chr9 65860835 65860980 -58215192 + B1_Mur4 SINE Alu 6 150 0 1 1087 212 100 0 24 chr9 65861087 65861128 -58215044 + (GAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1087 275 247 12 72 chr9 65861267 65861350 -58214822 + ID4 SINE ID 6 83 0 1 1087 271 321 71 35 chr9 65861362 65861475 -58214697 + PB1D10 SINE Alu 1 117 0 1 1087 21 0 0 0 chr9 65861528 65861549 -58214623 + AT_rich Low_complexity Low_complexity 1 21 0 1 1087 779 162 0 47 chr9 65861638 65861787 -58214385 + B1_Mus2 SINE Alu 5 146 -2 1 1087 262 280 103 90 chr9 65861657 65861802 -58214370 + B4A SINE B4 102 248 -44 1 1087 1165 95 95 0 chr9 65862254 65862423 -58213749 + B2_Mm1t SINE B2 1 185 -8 1 1087 285 29 0 0 chr9 65862522 65862556 -58213616 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1087 291 210 321 0 chr9 65862556 65862637 -58213535 - PB1D9 SINE Alu -11 109 3 1 1087 284 220 0 0 chr9 65862593 65862643 -58213529 - ID_B1 SINE B4 -97 127 78 1 1087 612 285 87 15 chr9 65862967 65863163 -58213009 + B4A SINE B4 9 218 -74 1 1087 1297 48 0 0 chr9 65863392 65863539 -58212633 + B1_Mm SINE Alu 1 147 0 1 1087 1221 102 84 0 chr9 65863548 65863715 -58212457 - B2_Mm2 SINE B2 -14 181 1 1 1087 22 0 0 0 chr9 65863724 65863746 -58212426 + AT_rich Low_complexity Low_complexity 1 22 0 1 1087 341 250 3 0 chr9 65863887 65863972 -58212200 + B4 SINE B4 2 88 -204 1 1087 853 280 31 78 chr9 65864008 65864302 -58211870 + B4 SINE B4 7 286 -6 1 1087 407 253 27 195 chr9 65864595 65864619 -58211553 - B2_Mm2 SINE B2 -8 187 166 1 1087 234 0 0 0 chr9 65864619 65864645 -58211527 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1087 616 236 78 61 chr9 65864645 65864841 -58211331 - B3A SINE B2 -30 165 4 1 1087 473 341 31 0 chr9 65864881 65865010 -58211162 - Lx8 LINE L1 -187 7286 7154 1 1087 703 224 19 19 chr9 65865018 65865177 -58210995 - B3 SINE B2 0 198 40 1 1087 300 137 39 19 chr9 65865239 65865291 -58210881 + B1F SINE Alu 46 98 -51 1 1087 1054 95 0 75 chr9 65865460 65865619 -58210553 - B1_Mus1 SINE Alu 0 148 2 1 1087 217 325 108 0 chr9 65865694 65865777 -58210395 + PB1 SINE Alu 12 103 -24 1 1087 1010 232 61 0 chr9 65866698 65866896 -58209276 + B3 SINE B2 1 210 -6 1 1087 25 31 0 0 chr9 65866907 65866939 -58209233 + AT_rich Low_complexity Low_complexity 1 32 0 1 1087 300 391 11 0 chr9 65867013 65867105 -58209067 + PB1D7 SINE Alu 1 93 -27 1 1087 453 183 0 19 chr9 65868561 65868675 -58207497 + B1_Mur1 SINE Alu 42 148 -1 1 1087 418 144 26 43 chr9 65868678 65868794 -58207378 + GA-rich Low_complexity Low_complexity 3 116 0 1 1087 912 174 110 22 chr9 65869014 65869196 -58206976 + B3A SINE B2 1 198 0 1 1087 1026 249 20 0 chr9 65869513 65869714 -58206458 + B3 SINE B2 2 206 -10 1 1087 243 0 0 0 chr9 65870181 65870208 -58205964 + (ACTG)n Simple_repeat Simple_repeat 1 27 0 1 1087 509 270 133 56 chr9 65870445 65870599 -58205573 + B3A SINE B2 6 177 -39 1 1087 697 164 511 25 chr9 65870599 65870881 -58205291 - MTD LTR MaLR 0 419 1 1 1087 360 270 133 56 chr9 65870881 65870922 -58205250 + B3 SINE B2 178 215 -1 1 1087 255 31 0 0 chr9 65871033 65871065 -58205107 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1087 251 361 46 9 chr9 65871091 65871200 -58204972 - Lx8 LINE L1 -192 7281 7169 1 1087 304 211 70 0 chr9 65871218 65871289 -58204883 + HAL1 LINE L1 827 902 -1605 1 1087 1011 98 15 0 chr9 65871322 65871455 -58204717 + B1_Mus1 SINE Alu 2 136 -12 1 1087 756 295 23 28 chr9 65871497 65871713 -58204459 + B3 SINE B2 2 216 0 1 1087 859 176 0 21 chr9 65871754 65871899 -58204273 + B1_Mur3 SINE Alu 5 146 -3 1 1087 826 263 172 11 chr9 65871986 65872421 -58203751 + HAL1 LINE L1 1140 1644 -863 1 1087 247 209 0 0 chr9 65872494 65872537 -58203635 + RSINE1 SINE B4 86 128 -37 1 1087 1440 86 16 5 chr9 65872644 65872831 -58203341 - B2_Mm2 SINE B2 -6 189 1 1 1087 267 279 15 0 chr9 65873145 65873213 -58202959 + ID4_ SINE ID 14 82 -1 1 1087 26 50 0 0 chr9 65873266 65873306 -58202866 + AT_rich Low_complexity Low_complexity 1 40 0 1 1087 743 274 5 38 chr9 65873338 65873524 -58202648 - B3A SINE B2 -14 184 5 1 1087 380 273 68 0 chr9 65873538 65873626 -58202546 - ID_B1 SINE B4 -8 216 123 1 1087 1105 96 7 20 chr9 65873649 65873798 -58202374 - B1_Mus2 SINE Alu 0 147 1 1 1087 215 365 0 0 chr9 65873798 65873850 -58202322 - ID_B1 SINE B4 -89 135 84 1 1087 1354 60 65 21 chr9 65873872 65874058 -58202114 - B2_Mm2 SINE B2 0 195 2 1 1087 213 39 0 0 chr9 65874111 65874137 -58202035 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1087 789 186 26 52 chr9 65874140 65874293 -58201879 - B1_Mur2 SINE Alu 0 149 1 1 1087 258 326 35 0 chr9 65874323 65874409 -58201763 - PB1D10 SINE Alu -16 101 13 1 1087 1258 55 7 0 chr9 65874770 65874916 -58201256 + B1_Mus2 SINE Alu 1 147 0 1 1087 485 192 150 16 chr9 65874952 65875112 -58201060 + B3 SINE B2 4 188 -7 1 1087 1464 65 54 0 chr9 65875165 65875350 -58200822 - B2_Mm2 SINE B2 0 195 1 1 1087 434 248 0 7 chr9 65875420 65875562 -58200610 + (TATATG)n Simple_repeat Simple_repeat 4 144 0 1 1087 27 92 0 0 chr9 65875667 65875743 -58200429 + AT_rich Low_complexity Low_complexity 1 76 0 1 1087 477 0 0 0 chr9 65876008 65876061 -58200111 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1 1087 334 294 45 9 chr9 65876063 65876173 -58199999 - B1F SINE Alu -35 114 1 1 1087 1076 72 0 0 chr9 65876312 65876450 -58199722 - B2_Mm2 SINE B2 -57 138 1 1 1087 287 171 273 45 chr9 65876626 65876736 -58199436 - L1MC4 LINE L1 -1 8041 7907 1 1087 235 273 0 0 chr9 65876736 65876791 -58199381 + (CATG)n Simple_repeat Simple_repeat 4 58 0 1 1087 506 296 27 7 chr9 65877060 65877206 -58198966 - B1F1 SINE Alu 0 149 1 1 1087 552 238 211 7 chr9 65877224 65877376 -58198796 - B3 SINE B2 -32 184 2 1 1087 330 274 39 129 chr9 65877718 65877873 -58198299 + B1F SINE Alu 2 142 -7 1 1087 513 321 88 23 chr9 65878032 65878249 -58197923 - MIRb SINE MIR -14 254 24 1 1087 297 301 74 15 chr9 65879125 65879260 -58196912 + RSINE1 SINE B4 2 144 -21 1 1087 305 197 28 14 chr9 65879326 65879398 -58196774 + B4 SINE B4 2 74 -218 1 1087 280 206 21 56 chr9 65879401 65879545 -58196627 + T-rich Low_complexity Low_complexity 4 142 0 1 1087 309 205 24 71 chr9 65879560 65879644 -58196528 + B1_Mus1 SINE Alu 9 88 -60 1 1087 538 247 169 12 chr9 65879577 65879737 -58196435 + B4 SINE B4 108 292 0 1 1087 225 0 0 0 chr9 65880289 65880314 -58195858 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1087 445 260 86 49 chr9 65881397 65881559 -58194613 - MER5B DNA MER1_type -7 171 4 1 1087 468 0 0 0 chr9 65882772 65882824 -58193348 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1087 285 51 0 0 chr9 65883450 65883489 -58192683 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1087 213 39 0 0 chr9 65884704 65884730 -58191442 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1087 859 209 129 10 chr9 65884938 65885131 -58191041 + B3 SINE B2 1 216 0 1 1087 1265 41 14 0 chr9 65885200 65885346 -58190826 - B1_Mus1 SINE Alu 0 148 1 1 1087 487 315 31 0 chr9 65885531 65885658 -58190514 - ID_B1 SINE B4 -14 210 80 1 1087 421 209 0 44 chr9 65885788 65885878 -58190294 + PB1D10 SINE Alu 27 112 -5 1 1087 890 213 43 24 chr9 65886062 65886269 -58189903 + B3 SINE B2 2 212 -4 1 1087 228 163 0 0 chr9 65887989 65888032 -58188140 + CT-rich Low_complexity Low_complexity 2 44 0 1 1087 180 77 0 0 chr9 65888271 65888297 -58187875 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1087 302 342 72 26 chr9 65892986 65893139 -58183033 + RSINE1 SINE B4 4 163 -2 1 1087 771 301 61 8 chr9 65893153 65893371 -58182801 + B4A SINE B4 2 232 -60 1 1087 683 288 25 25 chr9 65893371 65893567 -58182605 + B3A SINE B2 1 196 -2 1 1087 396 270 15 29 chr9 65893625 65893744 -58182428 + ID_B1 SINE B4 72 186 -38 1 1087 465 241 36 1 chr9 65894076 65894186 -58181986 + PB1D9 SINE Alu 2 113 -7 1 1087 1166 85 108 0 chr9 65894198 65894374 -58181798 + B2_Mm2 SINE B2 1 195 0 1 1087 351 96 0 0 chr9 65894535 65894587 -58181585 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1087 1480 83 5 0 chr9 65894613 65894805 -58181367 + B2_Mm1a SINE B2 1 193 0 1 1087 1587 36 0 25 chr9 65894830 65895027 -58181145 + B2_Mm1t SINE B2 2 193 0 1 1087 375 23 0 0 chr9 65895281 65895325 -58180847 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1087 288 0 0 0 chr9 65895325 65895356 -58180816 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1087 252 0 0 0 chr9 65895464 65895492 -58180680 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1087 636 143 83 28 chr9 65895519 65895627 -58180545 - PB1D9 SINE Alu -5 115 2 1 1087 266 292 177 14 chr9 65895656 65895828 -58180344 + B4A SINE B4 2 201 -91 1 1087 661 159 151 0 chr9 65895890 65896016 -58180156 + MTC LTR MaLR 1 145 -276 1 1087 299 128 0 0 chr9 65896022 65896069 -58180103 - B3 SINE B2 -169 47 1 1 1087 231 175 188 16 chr9 65896197 65896261 -58179911 + PB1D10 SINE Alu 43 117 0 1 1087 399 183 50 141 chr9 65896259 65896380 -58179792 + MT2B LTR ERVL 148 257 -344 1 1087 868 110 50 35 chr9 65896289 65896430 -58179742 + B1_Mur4 SINE Alu 8 150 0 1 1087 884 244 6 11 chr9 65896752 65896934 -58179238 + B3A SINE B2 6 186 -12 1 1087 22 0 0 0 chr9 65896934 65896956 -58179216 + AT_rich Low_complexity Low_complexity 1 22 0 1 1087 447 135 23 34 chr9 65896979 65897076 -58179096 + B1_Mus2 SINE Alu 55 150 0 1 1087 288 0 0 0 chr9 65898257 65898289 -58177883 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 1 1087 648 0 0 0 chr9 65898783 65898855 -58177317 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1087 201 39 0 0 chr9 65899444 65899470 -58176702 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1087 566 144 20 2 chr9 65900173 65900270 -58175902 - B1_Mus1 SINE Alu -12 108 1 1 1087 441 0 0 0 chr9 65900659 65900708 -58175464 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1087 543 128 0 0 chr9 65900855 65900941 -58175231 + (GA)n Simple_repeat Simple_repeat 2 87 0 1 1087 1136 102 7 0 chr9 65900958 65901105 -58175067 + B1_Mus1 SINE Alu 1 148 0 1 1087 411 128 261 23 chr9 65901120 65901208 -58174964 + B1_Mur4 SINE Alu 41 149 -1 1 1087 26 30 0 0 chr9 65901226 65901259 -58174913 + AT_rich Low_complexity Low_complexity 1 33 0 1 1087 1306 74 36 41 chr9 65901542 65901738 -58174434 - B2_Mm2 SINE B2 0 195 1 1 1087 750 64 46 0 chr9 65901757 65901866 -58174306 - URR1B DNA MER1_type 0 225 112 1 1087 371 317 52 105 chr9 65902035 65902143 -58174029 + RLTR33 LTR ERVK 139 235 -264 1 1087 3179 144 27 63 chr9 65902143 65902322 -58173850 + RLTR12A LTR ERVK 1 173 -395 1 1087 1143 108 0 0 chr9 65902322 65902470 -58173702 - B1_Mus1 SINE Alu 0 148 1 1 1087 3179 144 27 63 chr9 65902470 65902875 -58173297 + RLTR12A LTR ERVK 174 564 -4 1 1087 1031 145 6 60 chr9 65902875 65903032 -58173140 + RLTR33 LTR ERVK 18 173 -505 1 1087 666 219 14 14 chr9 65903032 65903171 -58173001 - RodERV21-int LTR ERV1 -3350 1641 1503 1 1087 2893 195 24 19 chr9 65903195 65903823 -58172349 + MYSERV6-int LTR ERVK 747 1377 -7582 1 1087 230 73 0 24 chr9 65904173 65904215 -58171957 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1087 369 0 0 0 chr9 65904216 65904257 -58171915 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1087 714 368 43 38 chr9 65904314 65904993 -58171179 - RodERV21-int LTR ERV1 -1164 3827 3146 1 1087 229 171 0 0 chr9 65905596 65905637 -58170535 + B2_Mm2 SINE B2 1 41 -154 1 1087 570 312 122 99 chr9 65905789 65906223 -58169949 + RLTR18 LTR ERVK 135 578 -38 1 1087 943 232 31 14 chr9 65906216 65906439 -58169733 - ORR1D2 LTR MaLR -143 227 1 1 1087 270 0 0 0 chr9 65907019 65907049 -58169123 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1087 543 265 114 36 chr9 65907078 65907297 -58168875 - B4A SINE B4 -55 237 2 1 1087 408 306 32 0 chr9 65907329 65907453 -58168719 - B1_Mur1 SINE Alu -19 130 3 1 1087 604 224 37 0 chr9 65907462 65907596 -58168576 - B1F SINE Alu -8 141 3 1 1087 347 231 241 0 chr9 65908731 65908839 -58167333 - RSINE1 SINE B4 -18 147 14 1 1087 443 182 62 41 chr9 65909005 65909133 -58167039 - B3 SINE B2 -69 129 3 1 1087 347 169 325 0 chr9 65909927 65910010 -58166162 - B1_Mur3 SINE Alu -31 118 9 1 1087 1410 40 75 0 chr9 65910086 65910260 -58165912 - B2_Mm1a SINE B2 -5 188 2 1 1087 882 249 27 14 chr9 65910330 65910550 -58165622 - ID_B1 SINE B4 0 224 2 1 1087 409 294 75 8 chr9 65911116 65911236 -58164936 + RSINE1 SINE B4 23 150 -15 1 1087 417 39 0 0 chr9 65911237 65911288 -58164884 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1087 319 207 97 45 chr9 65911317 65911408 -58164764 + PB1D10 SINE Alu 1 104 -23 1 1087 732 259 96 5 chr9 65911413 65911611 -58164561 + B3 SINE B2 1 216 0 1 1087 244 200 66 16 chr9 65911620 65911681 -58164491 + 4.5SRNA scRNA scRNA 23 86 -8 1 1087 594 122 40 10 chr9 65911635 65911734 -58164438 + B1_Mm SINE Alu 44 145 -2 1 1087 243 0 0 0 chr9 65911737 65911764 -58164408 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1087 2560 105 136 2 chr9 65912544 65912963 -58163209 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1087 431 252 35 35 chr9 65913656 65913771 -58162401 + PB1 SINE Alu 1 115 -12 1 1087 256 180 65 16 chr9 65913788 65913850 -58162322 + ID4_ SINE ID 14 78 -5 1 1087 295 314 67 8 chr9 65916064 65916183 -58159989 - MER45A DNA Tip100 -1 177 52 1 1087 183 129 0 0 chr9 65918084 65918115 -58158057 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 1 1087 381 295 47 9 chr9 65918274 65918380 -58157792 + PB1 SINE Alu 1 110 -17 1 1087 854 131 39 0 chr9 65918601 65918731 -58157441 - B1_Mus1 SINE Alu -13 135 1 1 1087 1042 230 32 56 chr9 65918872 65919314 -58156858 + MT2A LTR ERVL 1 542 -42 1 1087 888 19 0 70 chr9 65919314 65919485 -58156687 + (GAGAA)n Simple_repeat Simple_repeat 5 163 0 1 1087 231 186 23 0 chr9 65919527 65919570 -58156602 + RCHARR1 DNA MER1_type 40 83 -891 1 1087 1321 76 43 0 chr9 65919645 65919830 -58156342 - B2_Mm2 SINE B2 -1 194 2 1 1087 769 181 51 0 chr9 65919843 65919981 -58156191 - B1_Mus1 SINE Alu -2 146 2 1 1087 347 221 87 0 chr9 65919981 65920076 -58156096 + RCHARR1 DNA MER1_type 313 416 -558 1 1087 254 36 35 52 chr9 65920076 65920134 -58156038 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 1 1087 1157 76 7 0 chr9 65920136 65920281 -58155891 - B1_Mus1 SINE Alu 0 148 3 1 1087 781 215 21 36 chr9 65920285 65920478 -58155694 + RCHARR1 DNA MER1_type 643 832 -142 1 1087 455 191 0 21 chr9 65921286 65921382 -58154790 + MTC LTR MaLR 7 100 -321 1 1087 625 121 61 0 chr9 65921377 65921476 -58154696 + B1_Mm SINE Alu 43 147 0 1 1087 991 137 0 14 chr9 65921490 65921638 -58154534 + B1_Mus1 SINE Alu 1 146 -2 1 1087 705 229 55 100 chr9 65921661 65921932 -58154240 + MTC LTR MaLR 83 341 -80 1 1087 626 165 18 9 chr9 65922012 65922122 -58154050 + B3 SINE B2 4 114 -102 1 1087 3816 115 26 130 chr9 65922124 65922916 -58153256 + RMER6A LTR ERVK 47 756 0 1 1087 271 250 172 0 chr9 65923010 65923074 -58153098 + ID4_ SINE ID 5 79 -4 1 1087 360 0 0 0 chr9 65923378 65923418 -58152754 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1087 299 159 0 22 chr9 65923418 65923508 -58152664 + (CAGA)n Simple_repeat Simple_repeat 2 89 0 1 1087 236 77 26 0 chr9 65924096 65924135 -58152037 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1087 487 91 319 26 chr9 65924215 65924328 -58151844 - B2_Mm2 SINE B2 -3 192 47 1 1087 1193 113 11 11 chr9 65924375 65924554 -58151618 - B2_Mm1t SINE B2 -14 179 1 1 1087 180 0 0 0 chr9 65924558 65924578 -58151594 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1 1087 1285 62 0 12 chr9 65924578 65924740 -58151432 - B2_Mm2 SINE B2 -34 161 2 1 1087 229 301 104 17 chr9 65924788 65924827 -58151345 - B3 SINE B2 -87 129 5 1 1087 355 303 0 0 chr9 65924827 65924903 -58151269 - RSINE1 SINE B4 -84 81 6 1 1087 620 186 142 0 chr9 65925058 65925171 -58151001 + ID_B1 SINE B4 86 214 -10 1 1087 1226 54 0 20 chr9 65925439 65925590 -58150582 - B1_Mus1 SINE Alu 0 148 1 1 1087 560 122 194 82 chr9 65925600 65925620 -58150552 - B1_Mur3 SINE Alu 0 149 137 1 1087 303 28 0 0 chr9 65925620 65925656 -58150516 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1087 560 122 194 82 chr9 65925656 65925769 -58150403 - B1_Mur3 SINE Alu -13 136 1 1 1087 446 204 50 10 chr9 65925935 65926034 -58150138 - RSINE1 SINE B4 -60 105 3 1 1087 212 324 87 19 chr9 65926731 65926835 -58149337 + MIRb SINE MIR 158 268 0 1 1087 659 174 114 0 chr9 65927124 65927256 -58148916 - B1_Mus2 SINE Alu 0 147 1 1 1087 666 276 80 16 chr9 65927301 65927485 -58148687 - ID_B1 SINE B4 -13 211 16 1 1087 3194 130 114 137 chr9 65927485 65928259 -58147913 + RMER6A LTR ERVK 1 756 0 1 1087 360 43 0 0 chr9 65928304 65928350 -58147822 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1087 327 200 0 140 chr9 65928364 65928457 -58147715 + MT2B LTR ERVL 174 253 -348 1 1087 709 145 46 46 chr9 65928374 65928504 -58147668 + B1_Mur4 SINE Alu 20 149 -1 1 1087 204 97 0 0 chr9 65928504 65928535 -58147637 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 135 230 284 120 56 chr9 65929116 65929258 -58146914 - YREP_Mm Unknown Unknown -1476 336 186 1 135 703 130 78 39 chr9 65929143 65929271 -58146901 + B1_Mur3 SINE Alu 17 149 0 1 1088 501 252 110 0 chr9 65929447 65929574 -58146598 + ID_B1 SINE B4 82 222 -2 1 1088 403 266 11 87 chr9 65930357 65930396 -58145776 + ID_B1 SINE B4 63 211 -81 1 1088 804 134 0 0 chr9 65930396 65930515 -58145657 + B1_Mus2 SINE Alu 14 132 -15 1 1088 1334 92 11 0 chr9 65930664 65930838 -58145334 + B2_Mm1t SINE B2 1 176 -17 1 1088 341 86 330 28 chr9 65930888 65930997 -58145175 + B2_Mm2 SINE B2 47 188 -7 1 1088 29 28 0 0 chr9 65931126 65931162 -58145010 + AT_rich Low_complexity Low_complexity 1 36 0 1 1088 288 341 77 18 chr9 65931255 65931476 -58144696 - L1ME4a LINE L1 -198 5926 5693 1 1088 756 239 102 11 chr9 65931625 65931811 -58144361 + B3 SINE B2 1 203 -13 1 1088 3481 39 53 0 chr9 65932509 65932712 -58143460 - RLTR10C LTR ERVK 0 436 234 1 1088 261 0 0 0 chr9 65932712 65932741 -58143431 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1088 3481 39 53 0 chr9 65932741 65932951 -58143221 - RLTR10C LTR ERVK -203 233 2 1 1088 868 184 7 7 chr9 65932960 65933108 -58143064 + B1_Mur3 SINE Alu 2 149 0 1 1088 272 132 0 0 chr9 65933338 65933376 -58142796 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 1 1088 642 210 58 0 chr9 65933480 65933618 -58142554 - B1F2 SINE Alu -2 147 2 1 1088 300 232 0 0 chr9 65933667 65933736 -58142436 + L1MC4 LINE L1 7546 7614 -428 1 1088 600 237 77 6 chr9 65933936 65934106 -58142066 - B3A SINE B2 -16 182 1 1 1088 395 243 76 7 chr9 65934108 65934253 -58141919 + L1MC4 LINE L1 7769 7923 -119 1 1088 609 282 17 15 chr9 65934258 65934433 -58141739 + ID_B1 SINE B4 87 258 -34 1 1088 1434 55 39 0 chr9 65934462 65934643 -58141529 + B2_Mm1t SINE B2 2 189 -4 1 1088 214 30 0 57 chr9 65934755 65934790 -58141382 - PB1D9 SINE Alu -1 119 87 1 1088 180 0 0 0 chr9 65935043 65935063 -58141109 + (CAGGA)n Simple_repeat Simple_repeat 4 23 0 1 1088 266 256 11 103 chr9 65935485 65935572 -58140600 - ID4_ SINE ID -2 81 3 1 1088 1458 70 16 0 chr9 65937866 65938051 -58138121 - B2_Mm2 SINE B2 -6 189 2 1 1088 784 191 149 35 chr9 65938053 65938252 -58137920 + B3 SINE B2 9 211 -5 1 1088 696 224 8 0 chr9 65939110 65939244 -58136928 - ID_B1 SINE B4 -2 222 88 1 1088 227 261 19 124 chr9 65939170 65939275 -58136897 - MT2B2 LTR ERVL -346 238 145 1 1088 505 248 83 0 chr9 65939633 65939766 -58136406 - B1F1 SINE Alu 0 149 6 1 1088 282 243 81 0 chr9 65941568 65941642 -58134530 - MER58C DNA MER1_type -9 206 127 1 1088 243 0 0 0 chr9 65942348 65942375 -58133797 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1088 261 136 38 6 chr9 65943002 65943058 -58133114 + B1_Mus2 SINE Alu 2 62 -87 1 1088 1280 41 0 0 chr9 65943107 65943253 -58132919 + B1_Mus1 SINE Alu 3 148 0 1 1088 621 251 120 0 chr9 65943383 65943550 -58132622 + MER20 DNA MER1_type 2 188 -31 1 1088 204 40 0 0 chr9 65943989 65944014 -58132158 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1088 987 135 0 13 chr9 65944488 65944638 -58131534 - B1_Mus1 SINE Alu 0 148 1 1 1088 1391 82 11 0 chr9 65944771 65944955 -58131217 - B2_Mm1t SINE B2 -6 187 2 1 1088 287 259 28 35 chr9 65945488 65945585 -58130587 + PB1D9 SINE Alu 33 126 -24 1 1088 696 250 67 15 chr9 65945581 65945776 -58130396 + B3 SINE B2 7 211 -5 1 1088 248 324 27 0 chr9 65945904 65945978 -58130194 + ID4_ SINE ID 1 76 -7 1 1088 275 274 41 0 chr9 65946023 65946096 -58130076 + PB1D10 SINE Alu 12 87 -30 1 1088 494 280 30 48 chr9 65946499 65946685 -58129487 + B4 SINE B4 1 181 -111 1 1088 222 299 45 27 chr9 65946597 65946707 -58129465 + PB1D7 SINE Alu 9 120 0 1 1088 601 289 14 59 chr9 65946704 65946925 -58129247 + B4A SINE B4 82 292 0 1 1088 267 133 0 0 chr9 65947268 65947313 -58128859 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1088 652 169 25 0 chr9 65947314 65947432 -58128740 + B3 SINE B2 4 124 -92 1 1088 189 0 0 0 chr9 65947454 65947475 -58128697 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1088 239 307 77 26 chr9 65947574 65947691 -58128481 + L1M5 LINE L1 5459 5581 -659 1 1088 257 266 12 0 chr9 65948202 65948270 -58127902 + B1F1 SINE Alu 1 72 -76 1 1088 451 290 0 0 chr9 65948271 65948378 -58127794 + PB1D10 SINE Alu 2 108 -9 1 1088 374 287 0 9 chr9 65948426 65948542 -58127630 - PB1D10 SINE Alu 0 117 3 1 1088 891 214 20 39 chr9 65948756 65948960 -58127212 + B3 SINE B2 1 200 -16 1 1088 216 0 0 0 chr9 65948960 65948984 -58127188 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 1 1088 500 276 114 101 chr9 65950949 65951005 -58125167 + MLT1C LTR MaLR 66 133 -334 1 1088 3415 35 0 15 chr9 65951005 65951411 -58124761 + MTB LTR MaLR 1 400 0 1 1088 500 276 114 101 chr9 65951411 65951683 -58124489 + MLT1C LTR MaLR 134 402 -65 1 1088 455 259 35 0 chr9 65951683 65951799 -58124373 - PB1D7 SINE Alu 0 120 1 1 1088 500 276 114 101 chr9 65951799 65951864 -58124308 + MLT1C LTR MaLR 403 465 -2 1 1088 343 222 161 0 chr9 65952162 65952243 -58123929 - B3A SINE B2 -104 94 1 1 1088 23 0 0 0 chr9 65952253 65952276 -58123896 + AT_rich Low_complexity Low_complexity 1 23 0 1 1088 478 273 22 15 chr9 65952283 65952417 -58123755 - RSINE1 SINE B4 -4 161 27 1 1088 251 128 0 21 chr9 65952790 65952838 -58123334 + B1_Mus2 SINE Alu 100 146 -1 1 1088 763 63 0 0 chr9 65953631 65953742 -58122430 - ORR1A2 LTR MaLR -216 111 1 1 1088 423 0 0 0 chr9 65954744 65954791 -58121381 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1 1088 1488 194 168 11 chr9 65954796 65955160 -58121012 + MTC LTR MaLR 1 421 0 1 1088 260 133 0 62 chr9 65955328 65955376 -58120796 + ID_B1 SINE B4 169 213 -11 1 1088 381 272 12 0 chr9 65955399 65955480 -58120692 + PB1D7 SINE Alu 16 97 -23 1 1088 300 111 0 0 chr9 65955501 65955546 -58120626 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1088 221 235 12 24 chr9 65955582 65955665 -58120507 + A-rich Low_complexity Low_complexity 4 85 0 1 1088 223 227 0 0 chr9 65955671 65955715 -58120457 + PB1 SINE Alu 81 124 -3 1 1088 239 267 0 32 chr9 65955723 65955785 -58120387 + ID4_ SINE ID 11 70 -13 1 1088 437 278 78 23 chr9 65956653 65956782 -58119390 + B1F2 SINE Alu 5 140 -9 1 1088 223 348 67 11 chr9 65956790 65956880 -58119292 + ID_B1 SINE B4 78 172 -52 1 1088 334 283 49 29 chr9 65956801 65956903 -58119269 + PB1D10 SINE Alu 9 112 -5 1 1088 593 236 0 71 chr9 65957066 65957221 -58118951 - ID_B1 SINE B4 0 224 81 1 1088 207 100 0 0 chr9 65957713 65957743 -58118429 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1088 1038 29 7 0 chr9 65957747 65957885 -58118287 - B1_Mus2 SINE Alu 0 147 9 1 1088 294 208 18 119 chr9 65959003 65959029 -58117143 + B4A SINE B4 70 84 -208 1 1088 491 172 0 22 chr9 65959029 65959118 -58117054 + B1_Mur3 SINE Alu 2 88 -61 1 1088 264 59 0 0 chr9 65959122 65959156 -58117016 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1088 862 34 8 32 chr9 65959160 65959283 -58116889 + B1_Mm SINE Alu 28 147 0 1 1088 566 244 144 0 chr9 65959763 65959923 -58116249 + B4A SINE B4 2 184 -108 1 1088 315 130 0 0 chr9 65959924 65959978 -58116194 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1088 435 19 0 0 chr9 65959979 65960031 -58116141 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1088 365 281 52 0 chr9 65960176 65960272 -58115900 - PB1D9 SINE Alu -18 102 2 1 1088 1145 72 0 0 chr9 65960301 65960440 -58115732 + B1_Mus2 SINE Alu 1 139 -8 1 1088 201 39 0 0 chr9 65960440 65960466 -58115706 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1088 321 26 0 0 chr9 65960466 65960504 -58115668 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1 1088 600 14 0 0 chr9 65960506 65960575 -58115597 + (GAAAA)n Simple_repeat Simple_repeat 4 72 0 1 1088 252 0 0 0 chr9 65960753 65960781 -58115391 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1088 510 256 103 63 chr9 65960781 65960956 -58115216 - B3A SINE B2 -16 182 1 1 1088 857 150 118 0 chr9 65960993 65961146 -58115026 + B2_Mm2 SINE B2 2 172 -23 1 1088 313 80 374 10 chr9 65961163 65961262 -58114910 + B2_Mm2 SINE B2 47 181 -14 1 1088 1259 34 0 0 chr9 65961398 65961545 -58114627 + B1_Mm SINE Alu 1 147 0 1 1088 1166 146 101 19 chr9 65961599 65961808 -58114364 - URR1A DNA MER1_type 0 226 1 1 1088 437 222 0 0 chr9 65961814 65961904 -58114268 + PB1D10 SINE Alu 23 112 -5 1 1088 664 266 0 0 chr9 65962539 65962678 -58113494 + RSINE1 SINE B4 3 141 -24 1 1088 438 311 48 12 chr9 65963039 65963205 -58112967 - MLT1D LTR MaLR 0 505 334 1 1088 349 82 0 0 chr9 65963422 65963471 -58112701 - B2_Mm2 SINE B2 -145 50 2 1 1088 336 264 9 54 chr9 65963476 65963588 -58112584 + Charlie4a DNA MER1_type 28 134 -374 1 1088 1320 105 11 0 chr9 65963593 65963783 -58112389 + B2_Mm1t SINE B2 1 192 -1 1 1088 393 22 0 0 chr9 65963913 65963959 -58112213 + (CCCCCA)n Simple_repeat Simple_repeat 1 46 0 1 1088 745 60 276 0 chr9 65963981 65964097 -58112075 - B1_Mus1 SINE Alu 0 148 1 1 1088 246 283 84 9 chr9 65964103 65964210 -58111962 + Charlie4a DNA MER1_type 189 303 -205 1 1088 423 322 8 0 chr9 65964231 65964349 -58111823 + PB1D7 SINE Alu 1 119 -1 1 1088 228 189 81 0 chr9 65964362 65964436 -58111736 + Charlie4a DNA MER1_type 374 453 -55 1 1088 225 211 0 0 chr9 65965273 65965325 -58110847 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1 1088 717 152 0 29 chr9 65965333 65965469 -58110703 - B1_Mur4 SINE Alu -5 145 14 1 1088 346 103 52 0 chr9 65965636 65965694 -58110478 - B1_Mur4 SINE Alu -6 144 84 1 1088 374 266 67 98 chr9 65965666 65965697 -58110475 - CYRA11_Mm Unknown Y-chromosome -209 408 228 1 1088 1144 164 37 5 chr9 65965697 65965911 -58110261 + URR1A DNA MER1_type 6 226 0 1 1088 242 290 16 0 chr9 65965920 65965982 -58110190 + MurSatRep1 Unknown Unknown 201 263 -1874 1 1088 436 219 154 0 chr9 65966273 65966396 -58109776 + B1_Mur1 SINE Alu 2 143 -6 1 1088 387 263 52 17 chr9 65966438 65966554 -58109618 + RSINE1 SINE B4 3 122 -43 1 1088 524 162 21 6 chr9 65966641 65966749 -58109423 + B4A SINE B4 2 107 -58 1 1088 741 245 132 20 chr9 65966833 65967083 -58109089 + B4 SINE B4 1 278 -14 1 1088 441 54 0 0 chr9 65967089 65967145 -58109027 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1088 210 158 0 0 chr9 65967274 65967312 -58108860 + T-rich Low_complexity Low_complexity 1 38 0 1 1088 1107 182 154 19 chr9 65967390 65967714 -58108458 + L1MB2 LINE L1 5542 5909 -262 1 1088 303 251 105 0 chr9 65967722 65967834 -58108338 + B1F SINE Alu 13 138 -11 1 1088 216 0 0 0 chr9 65967834 65967858 -58108314 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1088 428 221 42 0 chr9 65967915 65968010 -58108162 + ID_B1 SINE B4 123 221 -3 1 1088 221 309 0 14 chr9 65968039 65968108 -58108064 + ID_B1 SINE B4 77 144 -80 1 1088 299 225 91 51 chr9 65968051 65968130 -58108042 + PB1 SINE Alu 8 90 -27 1 1088 1057 88 0 0 chr9 65968130 65968267 -58107905 + B1_Mus1 SINE Alu 4 140 -8 1 1088 238 225 96 53 chr9 65968267 65968285 -58107887 + PB1D10 SINE Alu 91 108 -9 1 1088 457 271 80 24 chr9 65968299 65968424 -58107748 - RSINE1 SINE B4 -9 156 25 1 1088 470 157 57 28 chr9 65968530 65968645 -58107527 - PB1D10 SINE Alu -2 125 1 1 1088 485 111 25 0 chr9 65969624 65969705 -58106467 + (TTTC)n Simple_repeat Simple_repeat 4 86 0 1 1088 1204 54 0 0 chr9 65969868 65970015 -58106157 - B1_Mm SINE Alu 0 147 1 1 1088 357 43 0 0 chr9 65970182 65970229 -58105943 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1088 234 263 118 0 chr9 65970291 65970367 -58105805 - PB1D10 SINE Alu -6 111 27 1 1088 278 217 98 54 chr9 65970442 65970554 -58105618 + PB1D10 SINE Alu 1 117 0 1 1088 312 259 22 11 chr9 65970631 65970721 -58105451 - B1F SINE Alu -58 91 1 1 1088 294 275 14 0 chr9 65970908 65970977 -58105195 + ID4_ SINE ID 5 74 -9 1 1088 215 312 176 27 chr9 65973014 65973162 -58103010 - L2b LINE L2 -3 3372 3203 1 1088 1107 69 14 0 chr9 65973262 65973407 -58102765 + B1_Mus2 SINE Alu 1 147 0 1 1088 513 171 86 0 chr9 65973570 65973675 -58102497 - B1F SINE Alu -34 115 2 1 1088 280 148 16 16 chr9 65975446 65975508 -58100664 + CT-rich Low_complexity Low_complexity 1 62 0 1 1088 634 248 0 54 chr9 65976279 65976445 -58099727 - RSINE1 SINE B4 0 165 9 1 1088 180 0 0 0 chr9 65976513 65976533 -58099639 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1088 525 209 35 9 chr9 65976546 65976662 -58099510 - B3A SINE B2 -42 156 38 1 1088 1196 61 0 0 chr9 65977019 65977166 -58099006 - B1_Mus2 SINE Alu 0 147 1 1 1088 257 219 78 0 chr9 65977800 65977864 -58098308 - PB1D10 SINE Alu 0 117 49 1 1088 428 284 0 0 chr9 65977935 65978044 -58098128 - PB1D10 SINE Alu -8 109 1 1 1088 764 204 33 38 chr9 65978120 65978303 -58097869 + B3 SINE B2 10 191 -25 1 1088 1179 76 0 0 chr9 65978482 65978627 -58097545 - B1_Mus2 SINE Alu 0 147 3 1 1088 266 222 0 87 chr9 65978771 65978840 -58097332 - RSINE1 SINE B4 -62 103 41 1 1088 1207 49 0 0 chr9 65978936 65979080 -58097092 + B1_Mus1 SINE Alu 1 144 -4 1 1088 324 0 0 0 chr9 65979081 65979117 -58097055 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1088 284 25 0 0 chr9 65979205 65979245 -58096927 + B1_Mur4 SINE Alu 107 146 -4 1 1088 288 0 0 0 chr9 65979246 65979278 -58096894 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1088 1222 55 0 0 chr9 65979881 65980026 -58096146 + B1_Mus1 SINE Alu 4 148 0 1 1088 607 225 167 6 chr9 65980064 65980238 -58095934 + B3 SINE B2 1 202 -14 1 1088 219 69 0 0 chr9 65980506 65980535 -58095637 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1088 231 123 0 109 chr9 65980598 65980662 -58095510 - B3 SINE B2 -3 213 157 1 1088 730 124 124 0 chr9 65980780 65980901 -58095271 - B1_Mur3 SINE Alu -13 136 1 1 1088 305 299 50 17 chr9 65981385 65981504 -58094668 - L1MB8 LINE L1 -14 6164 6042 1 1088 218 114 0 0 chr9 65981576 65981611 -58094561 + PB1D10 SINE Alu 76 110 -7 1 1088 519 60 0 0 chr9 65981613 65981680 -58094492 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1088 302 261 161 22 chr9 65981752 65981975 -58094197 - L1MB8 LINE L1 -197 5977 5724 1 1088 974 179 141 0 chr9 65981990 65982174 -58093998 + B3 SINE B2 1 210 -6 1 1088 39 38 0 0 chr9 65982181 65982234 -58093938 + AT_rich Low_complexity Low_complexity 1 53 0 1 1088 470 237 0 81 chr9 65982360 65982484 -58093688 - PB1D10 SINE Alu -1 116 3 1 1088 445 257 129 10 chr9 65982485 65982678 -58093494 - L1MC4 LINE L1 -468 7574 7359 1 1088 243 240 12 85 chr9 65982662 65982744 -58093428 - L1MC4 LINE L1 -860 7101 7026 1 1088 710 194 27 40 chr9 65982754 65982904 -58093268 - B1_Mur2 SINE Alu 0 149 2 1 1088 339 222 121 11 chr9 65983072 65983163 -58093009 - RSINE1 SINE B4 -61 104 4 1 1088 627 153 149 25 chr9 65983198 65983319 -58092853 + B1_Mus2 SINE Alu 5 140 -7 1 1088 216 67 0 0 chr9 65983325 65983355 -58092817 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 1 1088 420 37 0 0 chr9 65983367 65983421 -58092751 + (CAGAGA)n Simple_repeat Simple_repeat 2 55 0 1 1088 221 219 0 0 chr9 65983424 65983465 -58092707 + MIR3 SINE MIR 147 187 -21 1 1088 683 234 28 0 chr9 65984711 65984852 -58091320 + B1_Mur1 SINE Alu 2 146 -3 1 1088 926 186 106 20 chr9 65985145 65985343 -58090829 - B3 SINE B2 0 216 2 1 1088 384 214 0 0 chr9 65985375 65985445 -58090727 - ID4 SINE ID -12 71 2 1 1088 541 207 17 8 chr9 65985468 65985585 -58090587 - PB1D9 SINE Alu -1 119 2 1 1088 654 250 21 0 chr9 65985807 65985947 -58090225 + B3A SINE B2 12 154 -44 1 1088 288 77 0 0 chr9 65985953 65985992 -58090180 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1088 1095 109 0 0 chr9 65986359 65986506 -58089666 - B1_Mus1 SINE Alu 0 148 2 1 1088 1027 154 58 62 chr9 65986965 65987173 -58088999 - B3 SINE B2 -6 210 4 1 1088 572 332 67 29 chr9 65987405 65987746 -58088426 + MLT1F LTR MaLR 1 354 -194 1 1088 856 202 5 113 chr9 65988099 65988311 -58087861 - B3 SINE B2 -27 189 1 1 1088 867 191 106 0 chr9 65988533 65988732 -58087440 + URR1A DNA MER1_type 1 220 -6 1 1088 240 154 129 71 chr9 65988784 65988854 -58087318 + LTR48B LTR ERV1 1 74 -570 1 1088 1432 64 21 0 chr9 65988878 65989066 -58087106 + B2_Mm1t SINE B2 2 193 0 1 1088 1170 68 0 20 chr9 65989076 65989227 -58086945 + B1_Mus1 SINE Alu 1 148 0 1 1088 346 231 51 0 chr9 65989253 65989331 -58086841 + B1F SINE Alu 26 107 -42 1 1088 1226 41 0 0 chr9 65989672 65989818 -58086354 + B1_Mus2 SINE Alu 2 147 0 1 1088 198 103 0 0 chr9 65989818 65989847 -58086325 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1088 262 234 12 49 chr9 65989859 65989940 -58086232 + BC1_Mm scRNA scRNA 4 81 -71 1 1088 1374 170 132 40 chr9 65989985 65990334 -58085838 - MTC LTR MaLR -40 381 1 1 1088 406 202 13 0 chr9 65990453 65990532 -58085640 + ID SINE ID 1 80 -144 1 1088 346 197 70 0 chr9 65990541 65990612 -58085560 - B1F SINE Alu -65 84 9 1 1088 391 317 0 0 chr9 65990660 65990761 -58085411 + ID_B1 SINE B4 85 185 -39 1 1088 368 324 0 53 chr9 65990761 65990774 -58085398 + PB1D10 SINE Alu 4 111 -6 1 1088 380 322 9 0 chr9 65990821 65990936 -58085236 - PB1D9 SINE Alu -2 118 3 1 1088 255 336 69 0 chr9 65990938 65991069 -58085103 - MER58B DNA MER1_type -176 165 26 1 1088 585 236 35 0 chr9 65991228 65991372 -58084800 + B1F SINE Alu 1 149 0 1 1088 381 272 45 45 chr9 65991815 65991969 -58084203 + MIRb SINE MIR 50 203 -65 1 1088 776 127 8 0 chr9 65992002 65992128 -58084044 + B1_Mus1 SINE Alu 13 139 -9 1 1088 390 42 0 0 chr9 65992128 65992176 -58083996 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 1 1088 415 192 39 0 chr9 65992497 65992575 -58083597 - B3 SINE B2 -132 84 4 1 1088 2142 80 19 0 chr9 65992712 65993025 -58083147 + ORR1A2 LTR MaLR 1 319 -8 1 1088 30 69 0 0 chr9 65993038 65993096 -58083076 + AT_rich Low_complexity Low_complexity 1 58 0 1 1088 700 276 26 0 chr9 65993186 65993378 -58082794 + B4A SINE B4 1 197 -95 1 1088 1050 197 156 23 chr9 65993380 65993682 -58082490 + Lx9 LINE L1 7117 7458 -186 1 1088 432 0 0 0 chr9 65993687 65993735 -58082437 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1088 25 31 0 0 chr9 65993855 65993887 -58082285 + AT_rich Low_complexity Low_complexity 1 32 0 1 1088 272 232 176 29 chr9 65994008 65994110 -58082062 + PB1D10 SINE Alu 1 117 0 1 1088 444 221 0 109 chr9 65994129 65994276 -58081896 + B4A SINE B4 5 135 -157 1 1088 595 236 81 82 chr9 65994284 65994670 -58081502 + RLTR18 LTR ERVK 57 333 -283 1 1088 21 0 0 0 chr9 65994690 65994711 -58081461 + AT_rich Low_complexity Low_complexity 1 21 0 1 1088 888 314 128 24 chr9 65994767 65995064 -58081108 - L1MC4a LINE L1 -1984 5898 5571 1 1088 282 29 0 0 chr9 65995064 65995099 -58081073 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1088 888 314 128 24 chr9 65995099 65995309 -58080863 - L1MC4a LINE L1 -2312 5570 5338 1 1088 420 213 98 8 chr9 65995366 65995489 -58080683 - RSINE1 SINE B4 -29 136 3 1 1088 798 228 68 19 chr9 65995807 65996013 -58080159 - B3 SINE B2 0 216 1 1 1088 589 258 114 75 chr9 65996194 65996475 -58079697 + B4 SINE B4 1 292 0 1 1088 225 246 0 0 chr9 65996475 65996540 -58079632 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1088 296 258 157 15 chr9 65996769 65996903 -58079269 + MLT1A0 LTR MaLR 1 153 -212 1 1088 766 225 225 0 chr9 65996908 65997064 -58079108 + Lx8 LINE L1 7155 7338 -135 1 1088 180 0 0 0 chr9 65997064 65997084 -58079088 + (GGA)n Simple_repeat Simple_repeat 2 21 0 1 1088 766 225 225 0 chr9 65997084 65997180 -58078992 + Lx8 LINE L1 7339 7463 -10 1 1088 591 236 24 0 chr9 65997196 65997323 -58078849 + B3 SINE B2 19 148 -68 1 1088 722 222 51 0 chr9 65997465 65997641 -58078531 - ID_B1 SINE B4 0 224 40 1 1088 1389 61 0 0 chr9 65997652 65997832 -58078340 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1088 749 144 8 0 chr9 65997836 65997968 -58078204 + CT-rich Low_complexity Low_complexity 3 135 0 1 1088 951 213 30 5 chr9 65997994 65998197 -58077975 + ID_B1 SINE B4 2 209 -15 1 1088 2427 226 100 58 chr9 65998281 65999357 -58076815 + RMER1B Other Other 83 1066 0 1 1088 203 356 0 0 chr9 66000738 66000797 -58075375 - MIRc SINE MIR -107 161 103 1 1088 201 39 0 0 chr9 66000989 66001015 -58075157 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1088 181 260 37 99 chr9 66001604 66001685 -58074487 - L2c LINE L2 -25 3362 3287 3 1088 239 317 144 0 chr9 66001824 66001928 -58074244 - MIR SINE MIR -140 122 4 1 1088 323 302 23 76 chr9 66002349 66002408 -58073764 + MT2B2 LTR ERVL 116 165 -419 4 1088 705 188 70 28 chr9 66002408 66002535 -58073637 + B1_Mur1 SINE Alu 2 136 -13 5 1088 213 39 0 0 chr9 66002535 66002561 -58073611 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 1088 986 161 0 0 chr9 66002563 66002706 -58073466 + B1_Mus1 SINE Alu 4 146 -2 7 1088 705 188 70 28 chr9 66002706 66002717 -58073455 + B1_Mur1 SINE Alu 137 149 0 5 1088 354 208 95 0 chr9 66002806 66002903 -58073269 + MIR SINE MIR 58 173 -95 8 1088 950 144 0 0 chr9 66003018 66003157 -58073015 - B2_Mm2 SINE B2 -56 139 1 9 1088 670 271 27 43 chr9 66003192 66003377 -58072795 - B3A SINE B2 -16 182 1 1 1088 306 0 0 0 chr9 66003383 66003417 -58072755 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1088 1080 149 28 11 chr9 66003429 66003606 -58072566 + B2_Mm2 SINE B2 2 181 -14 1 1088 751 224 92 12 chr9 66003719 66003902 -58072270 + MTEa LTR MaLR 1 199 -180 1 1088 324 0 0 0 chr9 66003902 66003938 -58072234 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1088 647 242 41 16 chr9 66003938 66004060 -58072112 + MTEa LTR MaLR 200 359 -20 1 1088 302 253 51 0 chr9 66004328 66004407 -58071765 + MLT1G LTR MaLR 498 580 -11 1 1088 432 230 174 81 chr9 66004907 66005068 -58071104 - MTEa LTR MaLR -7 372 197 1 1088 566 288 75 16 chr9 66005194 66005418 -58070754 - MTEa LTR MaLR -146 233 1 1 1088 255 325 0 12 chr9 66007266 66007350 -58068822 + MIR3 SINE MIR 78 160 -48 1 1088 1322 161 19 0 chr9 66008036 66008247 -58067925 + B3 SINE B2 1 215 -1 1 1088 1140 201 5 14 chr9 66008306 66008513 -58067659 - ID_B1 SINE B4 -16 208 4 1 1088 410 194 139 46 chr9 66008528 66008636 -58067536 - PB1D7 SINE Alu 0 120 3 2 1088 216 259 56 90 chr9 66009060 66009149 -58067023 - MIR SINE MIR -140 122 37 2 1088 1302 184 19 0 chr9 66009171 66009383 -58066789 - B3 SINE B2 0 216 1 2 1088 271 297 119 2 chr9 66010906 66011052 -58065120 - MIR SINE MIR -105 163 2 2 1088 239 295 0 0 chr9 66011220 66011281 -58064891 - MIRc SINE MIR -113 155 95 2 1088 1158 204 10 0 chr9 66011355 66011561 -58064611 - B3 SINE B2 -7 209 2 2 1088 322 270 67 0 chr9 66011564 66011653 -58064519 - PB1D10 SINE Alu 0 117 23 2 1088 525 270 88 0 chr9 66011804 66011941 -58064231 + B1F1 SINE Alu 1 149 0 2 1088 763 270 21 11 chr9 66011966 66012157 -58064015 + B3A SINE B2 6 198 0 2 1088 2349 140 50 30 chr9 66012180 66012390 -58063782 - MTC LTR MaLR -8 413 211 2 1088 1665 16 21 0 chr9 66012390 66012578 -58063594 - B2_Mm1a SINE B2 0 193 2 3 1088 2349 140 50 30 chr9 66012578 66012771 -58063401 - MTC LTR MaLR -211 210 2 2 1088 1140 117 145 15 chr9 66012780 66012980 -58063192 - URR1A DNA MER1_type 0 226 1 3 1088 188 287 48 73 chr9 66013911 66014035 -58062137 - MIRc SINE MIR -124 144 24 3 1088 186 71 0 0 chr9 66014486 66014514 -58061658 + (C)n Simple_repeat Simple_repeat 1 28 0 3 1088 227 330 76 59 chr9 66015214 66015452 -58060720 - L2c LINE L2 -5 3382 3141 3 1088 227 271 0 48 chr9 66015843 66015905 -58060267 + PB1 SINE Alu 65 123 -4 3 1088 292 319 25 25 chr9 66015907 66016026 -58060146 + PB1D9 SINE Alu 1 119 -1 3 1088 212 0 0 35 chr9 66016031 66016060 -58060112 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1088 1167 207 10 0 chr9 66016441 66016649 -58059523 + B3 SINE B2 1 210 -6 3 1088 660 222 68 78 chr9 66017124 66017315 -58058857 - B3A SINE B2 -8 190 2 3 1088 599 231 8 0 chr9 66017385 66017502 -58058670 - RSINE1 SINE B4 -47 118 1 4 1088 213 319 75 0 chr9 66017503 66017597 -58058575 - MIR SINE MIR -73 189 89 4 1088 216 338 107 29 chr9 66017768 66017908 -58058264 - MIRb SINE MIR -96 172 22 4 1088 330 26 0 0 chr9 66018734 66018773 -58057399 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1088 1261 88 71 6 chr9 66018921 66019103 -58057069 - B2_Mm2 SINE B2 -1 194 1 4 1088 189 107 0 0 chr9 66019131 66019159 -58057013 + (CGTG)n Simple_repeat Simple_repeat 3 30 0 4 1088 819 157 0 160 chr9 66019986 66020198 -58055974 + MTB LTR MaLR 5 182 -218 4 1088 752 268 69 40 chr9 66020243 66020546 -58055626 + MER58D DNA MER1_type 67 378 -8 4 1088 340 281 153 18 chr9 66020897 66021061 -58055111 - MIRc SINE MIR -77 191 3 4 1088 324 0 0 0 chr9 66021677 66021713 -58054459 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 1088 570 283 0 46 chr9 66021721 66021760 -58054412 + ID_B1 SINE B4 52 217 -7 5 1088 840 156 15 0 chr9 66021760 66021895 -58054277 + B1_Mur1 SINE Alu 6 142 -7 5 1088 441 0 0 0 chr9 66021945 66021994 -58054178 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1088 386 231 66 0 chr9 66022001 66022092 -58054080 + B3A SINE B2 7 103 -95 5 1088 517 217 239 6 chr9 66022092 66022259 -58053913 + B3 SINE B2 2 207 -9 5 1088 29 0 0 0 chr9 66022264 66022293 -58053879 + AT_rich Low_complexity Low_complexity 1 29 0 5 1088 553 278 0 0 chr9 66022781 66022889 -58053283 - PB1D10 SINE Alu -7 110 3 5 1088 252 186 47 0 chr9 66022949 66022992 -58053180 + B4A SINE B4 1 45 -247 5 1088 582 109 0 0 chr9 66023042 66023134 -58053038 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1088 195 277 40 34 chr9 66023190 66023306 -58052866 - MIR SINE MIR -102 166 50 5 1088 839 218 90 20 chr9 66023358 66023522 -58052650 + B3 SINE B2 2 179 -37 6 1088 387 0 0 0 chr9 66023522 66023565 -58052607 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1088 839 218 90 20 chr9 66023565 66023601 -58052571 + B3 SINE B2 180 215 -1 6 1088 242 326 67 30 chr9 66023888 66024031 -58052141 + MIRc SINE MIR 37 182 -86 6 1088 424 209 15 15 chr9 66024369 66024500 -58051672 + (TATG)n Simple_repeat Simple_repeat 4 134 0 6 1088 283 279 85 69 chr9 66024527 66024762 -58051410 - RSINE1 SINE B4 0 292 64 6 1088 315 239 24 29 chr9 66024801 66024923 -58051249 - RSINE1 SINE B4 -170 122 3 6 1088 191 282 123 27 chr9 66025617 66025690 -58050482 + L2c LINE L2 3277 3356 -31 6 1088 217 324 15 0 chr9 66026371 66026439 -58049733 - MIRc SINE MIR -191 77 9 6 1088 285 270 0 0 chr9 66026734 66026796 -58049376 + RSINE1 SINE B4 2 63 -102 6 1088 839 75 0 0 chr9 66026796 66026902 -58049270 + B2_Mm2 SINE B2 2 107 -88 6 1088 516 246 35 9 chr9 66027101 66027216 -58048956 + RSINE1 SINE B4 44 161 -4 6 1088 270 261 0 16 chr9 66027549 66027626 -58048546 - B1_Mur2 SINE Alu -40 109 34 7 1088 577 234 21 35 chr9 66028210 66028352 -58047820 - RSINE1 SINE B4 -22 143 4 7 1088 754 125 160 23 chr9 66028419 66028550 -58047622 - B1_Mur3 SINE Alu 0 149 1 7 1088 399 89 0 0 chr9 66028560 66028616 -58047556 + (TCC)n Simple_repeat Simple_repeat 3 58 0 7 1088 1291 56 0 0 chr9 66028621 66028781 -58047391 - B2_Mm2 SINE B2 -34 161 2 7 1088 188 272 85 12 chr9 66030709 66030791 -58045381 - MIRc SINE MIR -65 203 116 7 1088 218 273 128 13 chr9 66030810 66030888 -58045284 - L2a LINE L2 -2 3424 3338 7 1088 1537 225 87 15 chr9 66030994 66031383 -58044789 + MTD LTR MaLR 3 419 0 7 1088 294 325 130 25 chr9 66031509 66031670 -58044502 - MIRb SINE MIR 0 268 91 7 1088 607 306 77 5 chr9 66032056 66032250 -58043922 - MLT1C LTR MaLR 0 467 260 7 1088 441 169 0 0 chr9 66033113 66033196 -58042976 + (TATG)n Simple_repeat Simple_repeat 1 83 0 8 1088 676 229 53 0 chr9 66033196 66033327 -58042845 - B1_Mur1 SINE Alu -11 138 1 8 1088 183 344 10 70 chr9 66033401 66033501 -58042671 + MIR3 SINE MIR 106 199 -9 8 1088 2372 161 9 58 chr9 66033607 66033698 -58042474 + MTC LTR MaLR 1 80 -341 8 1088 495 0 0 0 chr9 66033698 66033753 -58042419 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1088 2372 161 9 58 chr9 66033753 66034096 -58042076 + MTC LTR MaLR 81 414 -7 8 1088 465 27 26 26 chr9 66034096 66034172 -58042000 + (CAAAA)n Simple_repeat Simple_repeat 1 76 0 8 1088 373 202 40 0 chr9 66034965 66035064 -58041108 - Lx9 LINE L1 -7 7637 7535 8 1088 297 51 0 0 chr9 66035066 66035105 -58041067 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1088 1892 231 24 34 chr9 66035108 66035606 -58040566 - Lx9 LINE L1 -226 7418 6926 8 1088 1057 71 7 0 chr9 66035623 66035764 -58040408 + B1_Mus1 SINE Alu 7 148 0 8 1088 293 275 73 0 chr9 66035777 66035886 -58040286 - Lx9 LINE L1 -709 6935 6819 8 1088 355 296 0 0 chr9 66035950 66036031 -58040141 - ID4_ SINE ID -1 82 2 8 1088 986 292 16 73 chr9 66036121 66036193 -58039979 - B4A SINE B4 -5 287 231 9 1088 867 211 136 5 chr9 66036193 66036384 -58039788 - B3 SINE B2 0 216 1 9 1088 986 292 16 73 chr9 66036384 66036614 -58039558 - B4A SINE B4 -62 230 2 9 1088 194 321 35 90 chr9 66036729 66036873 -58039299 + L2 LINE L2 2185 2320 -1099 9 1088 270 0 0 0 chr9 66037029 66037059 -58039113 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1088 204 40 0 0 chr9 66037170 66037195 -58038977 + (TC)n Simple_repeat Simple_repeat 2 26 0 9 1088 1022 269 67 0 chr9 66037267 66037535 -58038637 - B4A SINE B4 0 292 7 9 1088 414 213 0 0 chr9 66037718 66037793 -58038379 - PB1D7 SINE Alu -5 115 41 9 1088 294 29 0 0 chr9 66038010 66038045 -58038127 + (TA)n Simple_repeat Simple_repeat 2 36 0 9 1088 1024 94 65 0 chr9 66038053 66038191 -58037981 - B1_Mus1 SINE Alu 0 148 2 9 1088 23 0 0 0 chr9 66038201 66038224 -58037948 + AT_rich Low_complexity Low_complexity 1 23 0 9 1088 679 241 14 34 chr9 66038236 66038382 -58037790 + B1_Mur1 SINE Alu 2 144 -5 1 1088 1019 225 14 5 chr9 66038390 66038604 -58037568 - B3 SINE B2 0 216 1 1 1088 610 72 21 0 chr9 66038611 66038708 -58037464 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 1 1088 558 0 0 0 chr9 66038722 66038784 -58037388 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 1 1088 650 203 29 7 chr9 66038784 66038915 -58037257 - B1_Mus2 SINE Alu -12 135 2 1 1088 216 0 0 0 chr9 66038961 66038985 -58037187 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1088 529 234 35 105 chr9 66039121 66039140 -58037032 + B4 SINE B4 79 216 -76 1 1088 1069 58 0 7 chr9 66039140 66039269 -58036903 + B1_Mus2 SINE Alu 9 137 -10 1 1088 208 0 62 0 chr9 66039269 66039301 -58036871 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1088 529 234 35 105 chr9 66039309 66039324 -58036848 + B4 SINE B4 217 238 -54 1 1088 261 311 40 56 chr9 66040018 66040144 -58036028 - MER3 DNA MER1_type -33 176 53 1 1088 557 164 125 0 chr9 66040241 66040345 -58035827 - PB1D10 SINE Alu 0 117 1 1 1088 366 212 182 0 chr9 66041265 66041364 -58034808 - MER5A DNA MER1_type -72 117 1 1 1088 21 0 0 0 chr9 66041515 66041536 -58034636 + AT_rich Low_complexity Low_complexity 1 21 0 1 1088 731 275 64 0 chr9 66041567 66041738 -58034434 - B3A SINE B2 -15 183 2 1 1088 220 295 45 45 chr9 66041818 66041928 -58034244 - L2c LINE L2 -30 3357 3248 1 1088 938 204 5 52 chr9 66042375 66042566 -58033606 + B3A SINE B2 1 182 -16 1 1088 757 173 3 3 chr9 66042566 66042855 -58033317 + (CA)n Simple_repeat Simple_repeat 1 289 0 1 1088 453 36 0 0 chr9 66042950 66043005 -58033167 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1088 1035 188 19 37 chr9 66043367 66043583 -58032589 - B3 SINE B2 -3 213 2 1 1088 913 164 0 27 chr9 66043615 66043765 -58032407 + B1_Mur3 SINE Alu 2 147 -2 1 1088 447 106 0 0 chr9 66043780 66043846 -58032326 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1088 632 218 48 16 chr9 66043855 66043981 -58032191 - RSINE1 SINE B4 -31 134 5 1 1088 236 287 91 11 chr9 66044679 66044767 -58031405 + MIR SINE MIR 53 147 -61 1 1088 615 206 229 57 chr9 66044904 66045079 -58031093 - B3 SINE B2 -10 206 2 1 1088 251 270 232 21 chr9 66045135 66045374 -58030798 - MTEa LTR MaLR -7 372 64 1 1088 736 250 12 6 chr9 66045677 66045842 -58030330 - B3A SINE B2 -1 197 32 1 1088 1212 62 7 0 chr9 66045856 66046001 -58030171 - B1_Mus2 SINE Alu 0 147 2 1 1088 789 223 7 0 chr9 66046272 66046420 -58029752 - B1_Mur1 SINE Alu 0 149 1 1 1088 1089 221 111 26 chr9 66046684 66046884 -58029288 + RMER17C LTR ERVK 2 224 -186 1 1088 261 57 0 0 chr9 66046884 66046919 -58029253 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1 1088 1089 221 111 26 chr9 66046919 66047095 -58029077 + RMER17C LTR ERVK 225 410 0 1 1088 918 213 137 0 chr9 66047990 66048187 -58027985 - B4A SINE B4 -67 225 2 1 1088 537 307 29 14 chr9 66048786 66048925 -58027247 - ID_B1 SINE B4 0 224 84 1 1088 230 295 35 123 chr9 66048925 66048998 -58027174 + YREP_Mm Unknown Unknown 114 259 -1553 1 1088 847 104 9 1 chr9 66048998 66049124 -58027048 - B1_Mur1 SINE Alu -6 143 23 1 1088 230 295 35 123 chr9 66049124 66049153 -58027019 + YREP_Mm Unknown Unknown 260 321 -1491 1 1088 758 194 0 23 chr9 66049186 66049318 -58026854 - RSINE1 SINE B4 -32 133 5 1 1088 426 254 91 0 chr9 66050120 66050230 -58025942 - MER5A1 DNA MER1_type -3 163 44 1 1088 825 11 0 0 chr9 66050781 66050875 -58025297 + (TTC)n Simple_repeat Simple_repeat 2 95 0 1 1088 1177 52 0 0 chr9 66050876 66051011 -58025161 - B1_Mm SINE Alu -12 135 1 1 1088 250 242 0 19 chr9 66051107 66051169 -58025003 + B1F SINE Alu 47 107 -13 1 1088 587 211 65 0 chr9 66051407 66051530 -58024642 + B1_Mur1 SINE Alu 1 131 -18 1 1088 514 60 12 12 chr9 66051540 66051624 -58024548 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1088 211 302 19 0 chr9 66052161 66052214 -58023958 - B1F SINE Alu -93 56 3 1 1088 771 11 0 0 chr9 66052214 66052302 -58023870 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 1 1088 216 97 0 0 chr9 66052390 66052421 -58023751 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 1088 487 290 58 0 chr9 66052422 66052435 -58023737 - B1F2 SINE Alu -2 147 3 1 1088 581 274 0 0 chr9 66052435 66052559 -58023613 - ID_B1 SINE B4 -17 207 84 1 1088 510 230 0 0 chr9 66052832 66052932 -58023240 - PB1D10 SINE Alu -17 100 1 1 1088 1027 243 9 5 chr9 66053161 66053372 -58022800 + ID_B1 SINE B4 1 212 -12 1 1088 248 345 35 0 chr9 66054167 66054254 -58021918 + MIR SINE MIR 152 241 -21 1 1088 777 247 14 23 chr9 66054312 66054508 -58021664 + ID_B1 SINE B4 34 224 0 1 1088 305 280 77 71 chr9 66054386 66054555 -58021617 - YREP_Mm Unknown Unknown -1518 294 125 1 1088 197 372 46 11 chr9 66055210 66055297 -58020875 - L2b LINE L2 -22 3353 3264 1 1088 501 226 49 0 chr9 66055758 66055860 -58020312 + PB1D7 SINE Alu 1 107 -13 1 1088 313 319 58 8 chr9 66056158 66056278 -58019894 + L1M5 LINE L1 5206 5331 -815 1 1088 330 26 0 0 chr9 66056387 66056426 -58019746 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1088 302 299 39 0 chr9 66056586 66056663 -58019509 + ID4_ SINE ID 3 82 -1 1 1088 201 281 0 0 chr9 66056664 66056721 -58019451 + GA-rich Low_complexity Low_complexity 1 57 0 1 1088 485 251 0 6 chr9 66056819 66056987 -58019185 + CT-rich Low_complexity Low_complexity 2 168 0 1 1088 458 316 82 15 chr9 66057006 66057141 -58019031 + RSINE1 SINE B4 3 146 -19 1 1088 1497 39 0 0 chr9 66057202 66057381 -58018791 - B2_Mm1a SINE B2 -7 186 8 1 1088 411 266 0 21 chr9 66058883 66058979 -58017193 - RSINE1 SINE B4 -23 142 49 1 1088 999 103 15 0 chr9 66059597 66059733 -58016439 + B1_Mus1 SINE Alu 1 138 -10 1 1088 189 0 0 0 chr9 66059733 66059754 -58016418 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1088 782 245 9 75 chr9 66059754 66059966 -58016206 - B3A SINE B2 0 198 1 1 16 373 296 107 48 chr9 66060123 66060329 -58015843 + Charlie15a DNA MER1_type 7 224 0 1 1089 474 18 0 0 chr9 66061113 66061168 -58015004 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1089 378 241 0 0 chr9 66061169 66061248 -58014924 - ID4_ SINE ID -2 81 3 1 1089 419 293 13 73 chr9 66061871 66062021 -58014151 + MER97c DNA MER1_type? 20 160 -930 1 1089 438 196 2 0 chr9 66062021 66062102 -58014070 + ID4 SINE ID 3 84 -68 1 1089 441 54 0 0 chr9 66062292 66062348 -58013824 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1089 441 304 51 25 chr9 66062348 66062458 -58013714 - RSINE1 SINE B4 -19 146 34 1 1089 651 256 113 48 chr9 66062468 66062783 -58013389 - RMER10A LTR ERVL -24 418 82 1 1089 301 58 19 19 chr9 66062783 66062836 -58013336 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1089 651 256 113 48 chr9 66062836 66062856 -58013316 - RMER10A LTR ERVL -361 81 61 1 1089 293 305 55 85 chr9 66062913 66063078 -58013094 - RSINE1 SINE B4 -4 161 2 1 1089 44 63 0 0 chr9 66063124 66063203 -58012969 + AT_rich Low_complexity Low_complexity 1 79 0 1 1089 456 19 0 0 chr9 66063803 66063856 -58012316 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1089 1128 136 6 11 chr9 66064321 66064346 -58011826 - B2_Mm2 SINE B2 -17 178 154 1 1089 351 0 0 0 chr9 66064346 66064385 -58011787 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 1 1089 1159 74 7 0 chr9 66064385 66064538 -58011634 - B2_Mm1a SINE B2 -42 153 1 1 1089 344 40 20 0 chr9 66064767 66064817 -58011355 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1089 383 233 0 14 chr9 66064877 66064951 -58011221 + tRNA-Ala-GCG tRNA tRNA 1 73 -2 1 1089 814 142 13 54 chr9 66064958 66065107 -58011065 + B1_Mur4 SINE Alu 3 145 -5 1 1089 732 137 13 4 chr9 66065226 66065348 -58010824 + B1_Mur4 SINE Alu 1 148 -2 1 1089 414 288 47 16 chr9 66065668 66065795 -58010377 + MER5B DNA MER1_type 48 178 0 1 1089 240 259 21 96 chr9 66065832 66065926 -58010246 + MER5B DNA MER1_type 7 93 -85 1 1089 217 347 118 24 chr9 66066034 66066161 -58010011 - MIRb SINE MIR -108 160 22 1 1089 195 286 56 28 chr9 66069043 66069115 -58007057 - MIR SINE MIR -70 192 119 1 1089 311 306 66 107 chr9 66070061 66070332 -58005840 - L1M5 LINE L1 -286 5838 5579 1 1089 1258 48 0 0 chr9 66070411 66070558 -58005614 + B1_Mus1 SINE Alu 2 148 0 1 1089 252 0 0 0 chr9 66070623 66070651 -58005521 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1089 844 56 0 0 chr9 66070666 66070773 -58005399 - B1_Mus1 SINE Alu -9 139 33 1 1089 367 164 72 48 chr9 66070700 66070783 -58005389 - RLTR25B LTR ERVK -519 509 425 1 1089 363 263 53 0 chr9 66071393 66071488 -58004684 - PB1D7 SINE Alu -3 117 18 1 1089 972 243 101 8 chr9 66071559 66071816 -58004356 - B4A SINE B4 -11 281 1 1 1089 724 253 38 6 chr9 66072559 66072691 -58003481 - B3 SINE B2 -51 165 28 1 1089 202 29 0 54 chr9 66072691 66072728 -58003444 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1089 724 253 38 6 chr9 66072728 66072754 -58003418 - B3 SINE B2 -189 27 2 1 1089 812 278 34 5 chr9 66072802 66073008 -58003164 - ID_B1 SINE B4 0 224 13 1 1089 521 255 98 19 chr9 66073173 66073390 -58002782 + MIRc SINE MIR 20 248 -14 1 1089 2140 148 101 43 chr9 66073806 66074224 -58001948 - RMER10A LTR ERVL 0 442 1 1 1089 639 251 119 32 chr9 66074288 66074473 -58001699 - MTE2b LTR MaLR -16 363 163 1 1089 1235 48 0 0 chr9 66074494 66074640 -58001532 - B1_Mus2 SINE Alu 0 147 2 1 1089 457 241 99 0 chr9 66074660 66074822 -58001350 - Charlie5 DNA MER1_type -7 2617 2440 1 1089 216 158 0 0 chr9 66074822 66074860 -58001312 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 2 1089 719 241 77 46 chr9 66074860 66075121 -58001051 - Charlie5 DNA MER1_type -2344 280 12 1 1089 1235 47 0 13 chr9 66075139 66075289 -58000883 - B1_Mus1 SINE Alu 0 148 1 2 1089 256 260 56 65 chr9 66075510 66075617 -58000555 - MIR3 SINE MIR -29 179 74 2 1089 1204 334 157 82 chr9 66075677 66075779 -58000393 - MLT1A-int LTR MaLR -5 1730 1627 2 1089 907 174 0 20 chr9 66075779 66075931 -58000241 + B1_Mur1 SINE Alu 1 149 0 2 1089 1204 334 157 82 chr9 66075931 66076976 -57999196 - MLT1A-int LTR MaLR -109 1626 497 2 1089 659 196 9 9 chr9 66076976 66077089 -57999083 + RSINE1 SINE B4 3 115 -50 2 1089 243 103 0 0 chr9 66077092 66077131 -57999041 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1089 204 213 0 0 chr9 66077150 66077197 -57998975 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 2 1089 1118 338 83 23 chr9 66077200 66077636 -57998536 - MLT1A-int LTR MaLR -1241 494 33 2 1089 453 247 195 20 chr9 66077684 66077833 -57998339 - MLT1A LTR MaLR 0 374 200 2 1089 350 274 47 12 chr9 66078246 66078331 -57997841 - PB1D9 SINE Alu -30 90 3 2 1089 933 284 87 4 chr9 66078372 66078637 -57997535 + B4A SINE B4 2 288 -4 2 1089 466 262 0 19 chr9 66079052 66079157 -57997015 + RSINE1 SINE B4 48 150 -15 2 1089 285 135 0 0 chr9 66079915 66079967 -57996205 + (A)n Simple_repeat Simple_repeat 1 52 0 2 1089 526 248 132 52 chr9 66080436 66080557 -57995615 - ID_B1 SINE B4 -2 222 89 2 1089 222 37 0 0 chr9 66080557 66080584 -57995588 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 2 1089 526 248 132 52 chr9 66080584 66080636 -57995536 - ID SINE ID -136 88 35 2 1089 234 91 0 0 chr9 66080661 66080694 -57995478 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1089 1445 59 32 0 chr9 66080721 66080907 -57995265 - B2_Mm1t SINE B2 0 193 2 2 1089 743 197 0 42 chr9 66080908 66081051 -57995121 - B1_Mur4 SINE Alu -13 137 1 2 1089 238 316 224 0 chr9 66081460 66081612 -57994560 - L2 LINE L2 -539 2880 2695 2 1089 1207 221 94 21 chr9 66082998 66083304 -57992868 - MTE2a LTR MaLR -21 353 36 2 1089 218 337 36 0 chr9 66083334 66083417 -57992755 + L2c LINE L2 3073 3158 -229 2 1089 236 337 71 0 chr9 66083672 66083770 -57992402 - L2c LINE L2 -17 3370 3266 2 1089 293 347 100 17 chr9 66084472 66084667 -57991505 - MIRb SINE MIR -23 245 29 2 1089 627 221 66 0 chr9 66084682 66084804 -57991368 - ID_B1 SINE B4 0 224 95 2 1089 333 0 0 0 chr9 66084814 66084851 -57991321 + (TTTTC)n Simple_repeat Simple_repeat 1 37 0 2 1089 977 106 6 23 chr9 66084852 66085026 -57991146 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 2 1089 1016 142 265 0 chr9 66085081 66085292 -57990880 - RMER4B LTR ERVK 0 585 319 2 1089 282 56 0 0 chr9 66085294 66085330 -57990842 + (CCCCCT)n Simple_repeat Simple_repeat 5 40 0 2 1089 201 74 0 0 chr9 66085326 66085353 -57990819 + (TTC)n Simple_repeat Simple_repeat 2 28 0 2 1089 1205 62 0 0 chr9 66085355 66085499 -57990673 - B1_Mus2 SINE Alu -1 146 3 2 1089 587 51 13 0 chr9 66085499 66085578 -57990594 + (TCC)n Simple_repeat Simple_repeat 3 82 0 2 1089 284 294 174 12 chr9 66085893 66086087 -57990085 + MIRc SINE MIR 22 244 -24 2 1089 482 237 26 26 chr9 66086209 66086315 -57989857 + PB1D7 SINE Alu 3 110 -10 2 1089 180 0 0 0 chr9 66086315 66086335 -57989837 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1089 1082 163 72 63 chr9 66086602 66086825 -57989347 + URR1B DNA MER1_type 1 225 0 2 1089 295 259 126 59 chr9 66086861 66086980 -57989192 - MIR SINE MIR -149 127 1 2 1089 1306 51 0 0 chr9 66087980 66088138 -57988034 - B2_Mm2 SINE B2 -37 158 1 2 1089 263 316 13 0 chr9 66088152 66088228 -57987944 - MIRb SINE MIR -187 81 5 2 1089 415 236 85 16 chr9 66089400 66089529 -57986643 + MIR SINE MIR 35 172 -90 2 1089 535 327 0 25 chr9 66089925 66090085 -57986087 - B3A SINE B2 0 198 43 2 1089 224 324 110 50 chr9 66090516 66090830 -57985342 - L2c LINE L2 -5 3370 3049 2 1089 234 105 0 0 chr9 66091472 66091510 -57984662 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1089 251 242 15 0 chr9 66092189 66092255 -57983917 - L1MB8 LINE L1 -115 6063 5997 2 1089 858 154 7 20 chr9 66092257 66092409 -57983763 - B1_Mur4 SINE Alu 0 150 1 2 1089 623 252 0 41 chr9 66092446 66092591 -57983581 - RSINE1 SINE B4 -2 163 25 2 1089 1197 128 11 0 chr9 66092601 66092781 -57983391 + URR1A DNA MER1_type 45 226 0 2 1089 333 256 8 31 chr9 66092807 66092936 -57983236 - L1MB7 LINE L1 -185 5999 5874 2 1089 192 241 0 0 chr9 66092943 66093001 -57983171 + CT-rich Low_complexity Low_complexity 3 60 0 2 1089 257 258 0 0 chr9 66093096 66093158 -57983014 - L1MB7 LINE L1 -304 5874 5813 2 1089 214 339 0 0 chr9 66093214 66093270 -57982902 + ID4_ SINE ID 26 81 -2 2 1089 261 256 107 0 chr9 66093301 66093422 -57982750 - L1MB7 LINE L1 -391 5793 5660 2 1089 920 250 45 63 chr9 66094413 66094635 -57981537 + B4 SINE B4 52 269 -23 2 1089 429 20 0 0 chr9 66094642 66094692 -57981480 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1089 228 35 0 0 chr9 66094693 66094722 -57981450 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2 1089 903 232 22 6 chr9 66095486 66095664 -57980508 + B3A SINE B2 2 182 -16 2 1089 361 319 65 56 chr9 66095781 66095977 -57980195 + B4A SINE B4 2 204 -88 2 1089 294 29 0 0 chr9 66095992 66096027 -57980145 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1089 261 220 51 0 chr9 66096062 66096121 -57980051 - MER5C1 DNA MER1_type -91 172 111 2 1089 307 267 16 101 chr9 66096112 66096241 -57979931 + MT2B LTR ERVL 145 262 -339 2 1089 685 237 0 0 chr9 66096141 66096276 -57979896 + ID_B1 SINE B4 87 221 -3 2 1089 801 189 23 0 chr9 66096392 66096524 -57979648 + B1_Mus1 SINE Alu 2 136 -12 2 1089 851 296 88 12 chr9 66097629 66097968 -57978204 - MLT1A0 LTR MaLR 0 365 1 2 1089 239 292 93 46 chr9 66098588 66098739 -57977433 - MIRb SINE MIR -94 174 17 2 1089 216 322 11 11 chr9 66099196 66099287 -57976885 + CT-rich Low_complexity Low_complexity 4 94 0 2 1089 241 323 93 16 chr9 66099344 66099473 -57976699 + MIRm SINE MIR 35 173 -103 2 1089 248 297 65 11 chr9 66099779 66099871 -57976301 + MER5B DNA MER1_type 63 159 -19 2 1089 456 150 0 0 chr9 66100202 66100282 -57975890 + (TCC)n Simple_repeat Simple_repeat 3 82 0 2 1089 368 310 0 20 chr9 66100309 66100411 -57975761 - PB1D10 SINE Alu 0 117 18 2 1089 950 163 7 0 chr9 66100422 66100569 -57975603 + B1_Mur4 SINE Alu 3 150 0 2 1089 260 258 0 122 chr9 66100971 66101066 -57975106 - ID4 SINE ID -60 92 9 2 1089 195 42 0 0 chr9 66101077 66101101 -57975071 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 2 1089 650 239 0 50 chr9 66101101 66101242 -57974930 - B1_Mur1 SINE Alu -11 138 5 2 1089 440 248 55 0 chr9 66101251 66101360 -57974812 - PB1D10 SINE Alu -2 115 1 2 1089 251 324 99 0 chr9 66101360 66101394 -57974778 - B4A SINE B4 -202 90 46 2 1089 449 301 92 6 chr9 66101395 66101559 -57974613 - MIRc SINE MIR -84 184 7 2 1089 453 232 11 0 chr9 66105672 66105767 -57970405 + ID_B1 SINE B4 1 96 -128 2 1089 22 0 0 0 chr9 66106134 66106156 -57970016 + AT_rich Low_complexity Low_complexity 1 22 0 2 1089 360 219 0 0 chr9 66106536 66106659 -57969513 + (CAGAGA)n Simple_repeat Simple_repeat 2 124 0 2 1089 261 183 14 14 chr9 66108456 66108528 -57967644 - Kanga1a DNA Tc2 -4 750 679 2 1089 3671 13 0 0 chr9 66109145 66109541 -57966631 - MTA_Mm LTR MaLR 0 396 1 2 1089 236 308 10 52 chr9 66109698 66109794 -57966378 - MIR3 SINE MIR -107 101 10 2 1089 390 314 62 56 chr9 66110244 66110406 -57965766 - B4 SINE B4 0 292 130 2 1089 564 184 103 17 chr9 66110325 66110441 -57965731 - B1_Mm SINE Alu -21 126 1 2 1089 913 247 86 5 chr9 66110441 66110654 -57965518 - B4 SINE B4 -60 232 2 2 1089 399 21 0 0 chr9 66111358 66111406 -57964766 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1089 23 0 0 0 chr9 66111522 66111545 -57964627 + AT_rich Low_complexity Low_complexity 1 23 0 2 1089 1480 128 27 22 chr9 66111658 66111882 -57964290 - URR1B DNA MER1_type 0 225 1 2 1089 348 252 60 10 chr9 66112271 66112371 -57963801 - PB1D10 SINE Alu -9 108 4 2 1089 412 245 128 14 chr9 66112431 66112572 -57963600 - B4A SINE B4 -127 165 9 2 1089 201 171 0 24 chr9 66112751 66112793 -57963379 + G-rich Low_complexity Low_complexity 2 42 0 2 1089 1043 53 0 29 chr9 66112822 66112959 -57963213 - B1_Mus1 SINE Alu 0 148 16 2 1089 1421 82 0 5 chr9 66112964 66113149 -57963023 - B2_Mm2 SINE B2 -11 184 1 2 1089 252 0 0 0 chr9 66113171 66113199 -57962973 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1089 255 61 0 0 chr9 66114647 66114680 -57961492 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1089 464 241 23 0 chr9 66114723 66114810 -57961362 - RSINE1 SINE B4 -74 91 3 2 1089 278 26 26 0 chr9 66115461 66115500 -57960672 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1089 477 156 0 0 chr9 66115634 66115711 -57960461 + B3 SINE B2 1 77 -139 2 1089 513 261 8 42 chr9 66115714 66115834 -57960338 - B3A SINE B2 -67 131 16 2 1089 405 0 0 0 chr9 66116081 66116126 -57960046 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1089 462 49 0 0 chr9 66116126 66116186 -57959986 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1089 348 111 0 0 chr9 66116193 66116247 -57959925 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 2 1089 311 295 0 13 chr9 66117027 66117100 -57959072 + B1F2 SINE Alu 2 69 -80 2 1089 587 326 104 0 chr9 66117339 66117569 -57958603 + MIR SINE MIR 1 254 -8 2 1089 951 234 14 60 chr9 66118513 66118683 -57957489 + B3 SINE B2 4 176 -40 3 1089 507 33 0 0 chr9 66118683 66118744 -57957428 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1089 951 234 14 60 chr9 66118744 66118791 -57957381 + B3 SINE B2 177 211 -5 3 1089 444 304 99 19 chr9 66120277 66120438 -57955734 + MLT1B LTR MaLR 1 174 -216 3 1089 447 236 22 18 chr9 66120442 66120590 -57955582 + B3A SINE B2 2 215 -1 3 1089 467 226 0 0 chr9 66120613 66120697 -57955475 + B1F SINE Alu 3 86 -63 3 1089 244 300 41 98 chr9 66120617 66120739 -57955433 + MT2B LTR ERVL 171 285 -316 3 1089 438 222 11 11 chr9 66120719 66120810 -57955362 + PB1 SINE Alu 9 99 -28 3 1089 219 170 0 0 chr9 66120810 66120857 -57955315 + GA-rich Low_complexity Low_complexity 3 49 0 3 1089 33 0 0 0 chr9 66120909 66120942 -57955230 + AT_rich Low_complexity Low_complexity 1 33 0 3 1089 708 238 0 13 chr9 66120949 66121098 -57955074 + B1F2 SINE Alu 2 148 -1 3 1089 507 209 102 58 chr9 66121441 66121578 -57954594 + MLT1B LTR MaLR 240 382 -8 3 1089 234 0 0 0 chr9 66121811 66121837 -57954335 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1089 486 49 0 0 chr9 66121948 66122009 -57954163 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1089 214 29 57 0 chr9 66122081 66122116 -57954056 + (ATTG)n Simple_repeat Simple_repeat 3 39 0 3 1089 519 222 22 127 chr9 66122120 66122301 -57953871 - RSINE1 SINE B4 -1 164 3 3 1089 498 221 29 9 chr9 66122301 66122406 -57953766 - PB1D10 SINE Alu -1 116 10 3 1089 235 323 125 8 chr9 66123650 66123778 -57952394 - MIRc SINE MIR -83 185 43 3 1089 219 167 0 0 chr9 66123824 66123860 -57952312 + A-rich Low_complexity Low_complexity 1 36 0 3 1089 391 262 0 0 chr9 66124021 66124101 -57952071 - ID4_ SINE ID -2 81 2 3 1089 735 247 210 88 chr9 66124175 66124504 -57951668 - MLT1B LTR MaLR -19 371 3 3 1089 405 230 0 0 chr9 66124519 66124593 -57951579 + ID4_ SINE ID 2 75 -8 3 1089 404 252 34 59 chr9 66125280 66125398 -57950774 + MT2B LTR ERVL 150 264 -337 3 1089 649 162 89 57 chr9 66125302 66125426 -57950746 + B1_Mur3 SINE Alu 8 135 -14 3 1089 373 172 0 21 chr9 66125451 66125546 -57950626 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1089 248 286 35 12 chr9 66125569 66125654 -57950518 - L3 LINE CR1 -190 4299 4213 3 1089 364 252 148 12 chr9 66126045 66126183 -57949989 + MER5A DNA MER1_type 14 165 -1 3 1089 1057 246 50 14 chr9 66126190 66126470 -57949702 + B4 SINE B4 1 290 -2 3 1089 319 353 62 10 chr9 66127048 66127257 -57948915 + RMER15 LTR ERVL 339 558 -17 3 1089 1123 275 51 42 chr9 66127938 66128273 -57947899 + MTEa LTR MaLR 19 356 -23 3 1089 498 157 0 121 chr9 66128254 66128370 -57947802 - B1_Mur1 SINE Alu 0 149 48 3 1089 327 233 41 0 chr9 66128353 66128426 -57947746 + MTEa LTR MaLR 298 373 -6 3 1089 619 194 69 35 chr9 66128800 66128944 -57947228 + B1_Mur2 SINE Alu 1 149 0 3 1089 415 316 36 71 chr9 66128997 66129222 -57946950 + MIRb SINE MIR 27 243 -25 3 1089 552 182 26 26 chr9 66129759 66129872 -57946300 - PB1D10 SINE Alu 0 117 5 3 1089 285 276 11 33 chr9 66129969 66130059 -57946113 + MTEa LTR MaLR 278 365 -14 3 1089 726 232 32 38 chr9 66130085 66130242 -57945930 + ID_B1 SINE B4 66 221 -3 3 1089 1300 109 27 0 chr9 66130252 66130436 -57945736 + B2_Mm2 SINE B2 3 191 -4 3 1089 741 221 111 0 chr9 66130525 66130706 -57945466 - B3 SINE B2 -14 202 2 3 1089 543 262 62 28 chr9 66131080 66131225 -57944947 + RSINE1 SINE B4 2 151 -14 3 1089 203 279 33 0 chr9 66131228 66131289 -57944883 + (CATG)n Simple_repeat Simple_repeat 3 65 0 3 1089 213 303 171 8 chr9 66131495 66131618 -57944554 - MIRb SINE MIR -122 146 4 3 1089 297 281 0 0 chr9 66132080 66132144 -57944028 + tRNA-Ala-GCA tRNA tRNA 1 64 -11 3 1089 381 22 0 0 chr9 66132145 66132191 -57943981 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1089 530 130 9 0 chr9 66132308 66132416 -57943756 + (TA)n Simple_repeat Simple_repeat 2 110 0 3 1089 429 252 24 168 chr9 66132462 66132556 -57943616 + RSINE1 SINE B4 2 82 -83 3 1089 473 174 202 10 chr9 66132556 66132655 -57943517 + PB1D9 SINE Alu 1 118 -2 3 1089 429 252 24 168 chr9 66132655 66132727 -57943445 + RSINE1 SINE B4 83 144 -21 3 1089 1619 27 0 5 chr9 66133043 66133230 -57942942 - B2_Mm1a SINE B2 -5 188 3 3 1089 368 152 0 0 chr9 66133263 66133322 -57942850 - ID_B1 SINE B4 -1 223 165 3 1089 180 0 0 0 chr9 66133348 66133368 -57942804 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 1089 374 299 54 72 chr9 66133371 66133512 -57942660 - RSINE1 SINE B4 0 165 29 3 1089 405 0 0 0 chr9 66133512 66133557 -57942615 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1089 374 299 54 72 chr9 66133557 66133581 -57942591 - RSINE1 SINE B4 -137 28 4 3 1089 2650 198 84 52 chr9 66134134 66134195 -57941977 - Lx9 LINE L1 -7 7637 7557 3 1089 315 0 0 0 chr9 66134195 66134230 -57941942 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1089 2650 198 84 52 chr9 66134230 66134278 -57941894 - Lx9 LINE L1 -88 7556 7513 3 1089 231 61 0 0 chr9 66134278 66134311 -57941861 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1089 2650 198 84 52 chr9 66134311 66134387 -57941785 - Lx9 LINE L1 -132 7512 7426 3 1089 228 67 0 0 chr9 66134387 66134417 -57941755 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1089 886 183 0 0 chr9 66134417 66134559 -57941613 - B1_Mur4 SINE Alu -7 143 2 3 1089 2650 198 84 52 chr9 66134559 66135024 -57941148 - Lx9 LINE L1 -219 7425 6965 3 1089 445 231 72 27 chr9 66135118 66135229 -57940943 - PB1D10 SINE Alu -1 116 1 3 1089 360 0 0 0 chr9 66135236 66135276 -57940896 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1089 762 302 52 11 chr9 66135279 66135547 -57940625 - B4A SINE B4 -12 280 2 3 1089 637 286 34 0 chr9 66135585 66135732 -57940440 + B3A SINE B2 36 187 -11 3 1089 854 171 116 30 chr9 66135767 66135927 -57940245 + B3 SINE B2 1 179 -37 3 1089 261 0 0 0 chr9 66135927 66135956 -57940216 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3 1089 854 171 116 30 chr9 66135956 66135994 -57940178 + B3 SINE B2 180 216 0 3 1089 343 250 13 0 chr9 66136873 66136949 -57939223 + ID4_ SINE ID 1 77 -6 3 1089 273 221 206 0 chr9 66137004 66137072 -57939100 + ID SINE ID 1 82 -142 3 1089 245 281 99 0 chr9 66137141 66137199 -57938973 + B1F SINE Alu 8 142 -7 3 1089 257 195 0 0 chr9 66137199 66137240 -57938932 + ID_B1 SINE B4 177 217 -7 3 1089 294 29 0 0 chr9 66137639 66137674 -57938498 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 1089 581 279 62 12 chr9 66138015 66138175 -57937997 - MER2 DNA MER2_type -58 287 120 3 1089 940 295 49 28 chr9 66138189 66138475 -57937697 + B4 SINE B4 1 292 0 3 1089 453 232 2 39 chr9 66138550 66138668 -57937504 - PB1 SINE Alu 0 120 12 3 1089 306 342 127 66 chr9 66138668 66138744 -57937428 - ID_B1 SINE B4 -1 220 15 3 1089 361 161 0 51 chr9 66138965 66139122 -57937050 + (TA)n Simple_repeat Simple_repeat 1 149 0 3 1089 307 380 54 0 chr9 66139122 66139288 -57936884 - L1M LINE L1 -696 5428 5254 3 1089 1557 258 176 52 chr9 66139514 66140230 -57935942 - RMER13A LTR ERVK -55 805 1 3 1089 516 292 34 39 chr9 66140567 66140745 -57935427 + RMER15 LTR ERVL 353 529 -46 3 1089 717 230 75 134 chr9 66140772 66140941 -57935231 + B3A SINE B2 2 166 -29 3 1089 561 30 0 0 chr9 66140941 66141008 -57935164 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 1089 252 0 0 0 chr9 66141008 66141035 -57935137 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1089 408 230 75 134 chr9 66141035 66141065 -57935107 + B2_Mm2 SINE B2 167 189 -6 3 1089 287 98 0 73 chr9 66141439 66141494 -57934678 - RLTR10 LTR ERVK -360 51 1 3 1089 279 237 79 0 chr9 66141690 66141766 -57934406 - B4 SINE B4 -187 105 24 3 1089 282 218 18 0 chr9 66141712 66141767 -57934405 - ID4_ SINE ID -6 77 22 3 1089 1131 174 179 103 chr9 66141877 66142082 -57934090 - RMER17C LTR ERVK -2 408 181 3 1089 399 21 0 0 chr9 66142082 66142130 -57934042 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1089 1131 174 179 103 chr9 66142130 66142303 -57933869 - RMER17C LTR ERVK -230 180 1 3 1089 477 90 0 0 chr9 66142311 66142378 -57933794 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 1089 1075 101 0 0 chr9 66142385 66142533 -57933639 - B1_Mus1 SINE Alu 0 148 1 3 1089 225 327 183 0 chr9 66142756 66142860 -57933312 - MIRc SINE MIR -135 133 11 3 1089 244 200 12 62 chr9 66143099 66143179 -57932993 + (TCTCTG)n Simple_repeat Simple_repeat 2 77 0 3 1089 328 155 0 27 chr9 66143183 66143256 -57932916 + C-rich Low_complexity Low_complexity 4 74 0 3 1089 309 183 0 0 chr9 66143342 66143402 -57932770 + CT-rich Low_complexity Low_complexity 2 61 0 3 1089 241 167 24 0 chr9 66143427 66143469 -57932703 - ID2 SINE ID -38 45 3 3 1089 237 265 0 56 chr9 66143770 66143842 -57932330 + MIRc SINE MIR 127 194 -74 3 1089 2310 30 2 0 chr9 66143918 66144190 -57931982 - RLTR10-int LTR ERVK -1686 301 1 3 1089 3002 26 2 155 chr9 66144192 66144650 -57931522 - RLTR10 LTR ERVK -2 388 1 3 1089 910 256 43 40 chr9 66144651 66145001 -57931171 - RMER17C LTR ERVK -59 351 1 3 1089 1004 248 13 34 chr9 66145566 66145800 -57930372 + B4 SINE B4 44 272 -20 3 1089 344 22 0 22 chr9 66145804 66145850 -57930322 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1089 389 286 112 97 chr9 66146648 66146907 -57929265 - ORR1E LTR MaLR 0 359 97 3 1089 1332 182 166 3 chr9 66147009 66147328 -57928844 - ORR1D1 LTR MaLR -3 371 1 3 1089 421 227 133 8 chr9 66147503 66147623 -57928549 + B4A SINE B4 6 140 -152 3 1089 378 0 0 0 chr9 66147775 66147817 -57928355 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1089 374 235 48 24 chr9 66147854 66147937 -57928235 + PB1D10 SINE Alu 33 117 0 3 1089 582 266 36 48 chr9 66147974 66148140 -57928032 + B4 SINE B4 47 210 -82 3 1089 1161 260 72 35 chr9 66148501 66148847 -57927325 - ORR1E LTR MaLR 0 359 1 3 1089 3375 114 72 44 chr9 66149313 66149883 -57926289 + RLTR1D LTR ERV1 4 589 -16 3 1089 252 137 0 0 chr9 66150362 66150413 -57925759 + (T)n Simple_repeat Simple_repeat 1 51 0 4 1089 1088 78 43 0 chr9 66150413 66150554 -57925618 - B1_Mus2 SINE Alu 0 147 1 4 1089 314 301 0 12 chr9 66151033 66151117 -57925055 - B4 SINE B4 -207 85 3 4 1089 930 240 33 38 chr9 66151117 66151329 -57924843 - B3 SINE B2 0 216 6 4 1089 407 232 95 0 chr9 66151354 66151449 -57924723 + RSINE1 SINE B4 9 112 -53 4 1089 227 289 82 10 chr9 66152213 66152311 -57923861 + RMER12 LTR ERVK 731 835 -487 4 1089 1015 283 17 31 chr9 66152340 66152632 -57923540 - B4A SINE B4 0 292 5 4 1089 437 341 106 0 chr9 66153561 66153845 -57922327 - LTR16B2 LTR ERVL 0 462 149 4 1089 285 253 265 0 chr9 66153867 66153950 -57922222 + MIRb SINE MIR 103 207 -61 4 1089 378 239 0 0 chr9 66153953 66154024 -57922148 + B1F SINE Alu 2 72 -77 4 1089 1203 48 14 0 chr9 66154769 66154914 -57921258 + B1_Mm SINE Alu 1 147 0 4 1089 226 107 18 18 chr9 66154921 66154978 -57921194 + (CAAAAA)n Simple_repeat Simple_repeat 4 60 0 4 1089 638 288 0 0 chr9 66155673 66155812 -57920360 - ID_B1 SINE B4 -2 222 84 4 1089 1214 61 0 0 chr9 66156093 66156240 -57919932 + B1_Mus2 SINE Alu 1 147 0 4 1089 366 358 56 0 chr9 66156310 66156472 -57919700 - MIRb SINE MIR -10 258 88 4 1089 607 224 44 93 chr9 66156529 66156711 -57919461 - MTE2a LTR MaLR -2 377 205 4 1089 661 255 0 7 chr9 66156835 66156985 -57919187 - B1F2 SINE Alu 0 149 1 4 1089 898 210 47 23 chr9 66157259 66157474 -57918698 + ID_B1 SINE B4 2 221 -3 4 1089 538 224 162 11 chr9 66157550 66157735 -57918437 + B3 SINE B2 1 213 -3 4 1089 1121 285 147 10 chr9 66158185 66158681 -57917491 + L1MB4 LINE L1 5588 6151 -32 4 1089 613 264 7 14 chr9 66158735 66158877 -57917295 + ID_B1 SINE B4 80 220 -4 4 1089 314 178 39 29 chr9 66159076 66159180 -57916992 + GA-rich Low_complexity Low_complexity 6 110 0 4 1089 280 225 84 0 chr9 66159737 66159808 -57916364 + ID4_ SINE ID 3 79 -4 4 1089 367 336 25 58 chr9 66159889 66160009 -57916163 + B1F1 SINE Alu 1 116 -1 4 1089 335 23 0 22 chr9 66160323 66160368 -57915804 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1089 469 177 0 12 chr9 66160380 66160460 -57915712 + B3A SINE B2 1 79 -119 4 1089 1412 219 72 22 chr9 66160740 66161099 -57915073 + MTEa LTR MaLR 1 377 -2 4 1089 9790 71 10 0 chr9 66161099 66163115 -57913057 + L1_Mus1 LINE L1 4530 6567 0 4 1089 309 262 111 9 chr9 66163504 66163612 -57912560 + L2a LINE L2 3286 3404 -22 4 1089 473 167 13 0 chr9 66163983 66164061 -57912111 - ID4_ SINE ID -2 81 3 4 1089 189 0 0 0 chr9 66164087 66164108 -57912064 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4 1089 288 313 20 0 chr9 66164145 66164244 -57911928 - PB1D10 SINE Alu -16 101 1 4 1089 2198 108 9 61 chr9 66165249 66165593 -57910579 - ORR1A3 LTR MaLR 0 326 1 4 1089 237 33 0 0 chr9 66165740 66165770 -57910402 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1089 246 105 0 0 chr9 66165771 66165809 -57910363 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 4 1089 797 332 109 73 chr9 66165810 66167010 -57909162 + L2a LINE L2 2170 3426 0 4 1089 388 250 333 0 chr9 66167080 66167200 -57908972 - RSINE1 SINE B4 -2 163 4 4 1089 284 272 0 19 chr9 66167276 66167381 -57908791 + GA-rich Low_complexity Low_complexity 4 106 0 4 1089 639 0 0 0 chr9 66167396 66167467 -57908705 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 4 1089 40 59 0 0 chr9 66167738 66167806 -57908366 + AT_rich Low_complexity Low_complexity 1 68 0 4 1089 1063 139 0 0 chr9 66167811 66167955 -57908217 - B1_Mur4 SINE Alu -5 145 2 4 1089 390 236 245 0 chr9 66167995 66168101 -57908071 - RSINE1 SINE B4 -21 144 13 4 1089 401 254 132 25 chr9 66168197 66168318 -57907854 - B1_Mur1 SINE Alu -14 135 2 4 1089 715 136 96 0 chr9 66168348 66168473 -57907699 - B1_Mus2 SINE Alu -2 145 9 4 1089 750 191 8 0 chr9 66168678 66168809 -57907363 + ORR1D1 LTR MaLR 1 132 -242 4 1089 333 0 0 0 chr9 66168816 66168853 -57907319 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1089 2238 141 58 51 chr9 66168856 66169289 -57906883 + RMER4A LTR ERVK 25 460 -6 4 1089 272 156 139 25 chr9 66169292 66169371 -57906801 + MLT1D LTR MaLR 411 498 -7 4 1089 255 264 56 0 chr9 66169467 66169539 -57906633 + RSINE1 SINE B4 54 129 -36 4 1089 203 61 0 29 chr9 66169550 66169584 -57906588 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 4 1089 243 0 0 0 chr9 66169600 66169627 -57906545 + (GAA)n Simple_repeat Simple_repeat 2 28 0 4 1089 268 244 53 53 chr9 66169659 66169754 -57906418 + MIRb SINE MIR 113 207 -61 4 1089 450 231 9 18 chr9 66170663 66170773 -57905399 + PB1D10 SINE Alu 1 109 -8 4 1089 1059 222 64 129 chr9 66171009 66171496 -57904676 - RLTR12B LTR ERVK -32 496 42 4 1089 453 305 30 72 chr9 66171520 66171686 -57904486 - RSINE1 SINE B4 -5 160 2 4 1089 236 266 15 15 chr9 66171882 66171947 -57904225 + MIR SINE MIR 43 107 -155 4 1089 1137 109 0 0 chr9 66171960 66172099 -57904073 + B1_Mus1 SINE Alu 1 139 -9 4 1089 257 0 0 29 chr9 66172099 66172133 -57904039 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 4 1089 180 97 0 0 chr9 66172152 66172183 -57903989 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1089 816 185 14 7 chr9 66172198 66172345 -57903827 + B1_Mur3 SINE Alu 2 149 0 4 1089 748 248 0 0 chr9 66172381 66172514 -57903658 - B1_Mur2 SINE Alu -16 133 1 4 1089 490 331 27 14 chr9 66172542 66172689 -57903483 + RSINE1 SINE B4 3 151 -14 4 1089 593 317 81 55 chr9 66172785 66173129 -57903043 + ORR1E LTR MaLR 3 355 -4 4 1089 445 286 83 0 chr9 66173465 66173598 -57902574 + ID_B1 SINE B4 81 224 0 4 1089 700 238 26 113 chr9 66173601 66173795 -57902377 + B3A SINE B2 1 177 -18 4 1089 186 43 0 0 chr9 66173796 66173819 -57902353 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 4 1089 283 296 81 56 chr9 66174275 66174472 -57901700 + L1M5 LINE L1 5614 5815 -309 4 1089 592 296 58 13 chr9 66174744 66174898 -57901274 - RSINE1 SINE B4 -4 161 1 4 1089 244 143 58 58 chr9 66175370 66175422 -57900750 - PB1 SINE Alu 0 127 76 4 1089 589 243 0 34 chr9 66175380 66175527 -57900645 - ID_B1 SINE B4 -8 216 81 4 1089 474 104 0 68 chr9 66175527 66175630 -57900542 + C-rich Low_complexity Low_complexity 1 96 0 4 1089 343 283 192 11 chr9 66175630 66175812 -57900360 - HAL1-3A_ME LINE L1 -662 2196 1982 4 1089 399 252 101 0 chr9 66175820 66175919 -57900253 - PB1D10 SINE Alu 0 117 9 4 1089 382 309 178 33 chr9 66175951 66176165 -57900007 - MLT1K LTR MaLR 0 595 351 4 1089 665 246 14 21 chr9 66178059 66178200 -57897972 + ID_B1 SINE B4 79 218 -6 4 1089 472 222 89 57 chr9 66178566 66178690 -57897482 + B1F2 SINE Alu 14 141 -8 4 1089 515 246 8 58 chr9 66178861 66178982 -57897190 + PB1D10 SINE Alu 3 117 0 4 1089 225 348 62 25 chr9 66178995 66179157 -57897015 + L1MC LINE L1 5483 5650 -2232 4 1089 541 230 151 0 chr9 66179177 66179303 -57896869 + B1_Mm SINE Alu 1 145 -2 4 1089 323 203 31 39 chr9 66179305 66179433 -57896739 + GA-rich Low_complexity Low_complexity 3 129 0 4 1089 370 269 49 65 chr9 66179619 66179742 -57896430 + MLT1J LTR MaLR 87 207 -305 4 1089 234 0 0 0 chr9 66179792 66179818 -57896354 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1089 406 225 84 20 chr9 66179912 66180030 -57896142 - B4A SINE B4 -89 135 2 4 1089 324 233 0 0 chr9 66180038 66180098 -57896074 - ID4_ SINE ID -1 82 23 4 1089 475 233 41 41 chr9 66180095 66180216 -57895956 - ID_B1 SINE B4 -20 204 84 4 1089 3057 69 58 0 chr9 66180816 66181194 -57894978 - MTB LTR MaLR 0 400 1 4 1089 342 0 0 0 chr9 66181509 66181547 -57894625 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1089 216 0 0 0 chr9 66181621 66181645 -57894527 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 4 1089 324 225 0 53 chr9 66181645 66181720 -57894452 - PB1D10 SINE Alu -12 105 35 4 1089 248 293 10 89 chr9 66181757 66181858 -57894314 + MT2B LTR ERVL 155 247 -354 4 1089 469 312 7 21 chr9 66181769 66181910 -57894262 + ID_B1 SINE B4 84 222 -2 4 1089 231 353 11 23 chr9 66181919 66182006 -57894166 + ID SINE ID 2 87 -137 4 1089 325 325 43 9 chr9 66182011 66182126 -57894046 + PB1D7 SINE Alu 1 119 -1 4 1089 368 345 34 23 chr9 66182171 66182346 -57893826 + MLT1J LTR MaLR 362 538 -57 4 1089 1508 22 0 11 chr9 66182535 66182718 -57893454 - B2_Mm1a SINE B2 -3 190 10 4 1089 1620 3 34 14 chr9 66182749 66183102 -57893070 + (GGGAGA)n Simple_repeat Simple_repeat 1 359 0 4 1089 299 326 141 25 chr9 66183613 66183855 -57892317 - RMER5 LTR ERV1 -260 274 5 4 1089 269 227 30 0 chr9 66183887 66183953 -57892219 - MER34 LTR ERV1 -25 517 450 4 1089 609 290 21 0 chr9 66184186 66184331 -57891841 - B1F SINE Alu 0 149 2 4 1089 231 61 0 0 chr9 66184467 66184500 -57891672 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1089 333 0 0 0 chr9 66184821 66184858 -57891314 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1089 480 111 0 0 chr9 66184940 66185012 -57891160 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1089 350 239 54 60 chr9 66185392 66185557 -57890615 - MTE2b LTR MaLR -7 412 255 5 1089 396 0 0 0 chr9 66185633 66185677 -57890495 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1089 1214 130 22 11 chr9 66185677 66185856 -57890316 - B2_Mm2 SINE B2 -14 181 1 5 1089 264 281 67 11 chr9 66186234 66186324 -57889848 - MIRb SINE MIR -18 250 156 5 1089 204 260 0 20 chr9 66186452 66186503 -57889669 + GA-rich Low_complexity Low_complexity 3 52 0 5 1089 192 250 93 40 chr9 66187345 66187420 -57888752 + L2c LINE L2 3048 3126 -261 5 1089 237 65 0 0 chr9 66187771 66187802 -57888370 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1089 273 326 146 0 chr9 66187833 66187922 -57888250 - BC1_Mm scRNA scRNA -49 103 2 5 1089 758 219 101 25 chr9 66187925 66188084 -57888088 + B3A SINE B2 4 174 -24 5 1089 404 278 79 43 chr9 66188596 66188735 -57887437 + B1F SINE Alu 4 147 -2 5 1089 4224 138 21 1 chr9 66188742 66189404 -57886768 + L1VL4 LINE L1 1 675 -5627 5 1089 12137 134 9 9 chr9 66189385 66190516 -57885656 + L1_Mus4 LINE L1 3974 5107 -776 5 1089 1338 88 29 0 chr9 66190516 66190687 -57885485 + B2_Mm2 SINE B2 2 177 -18 5 136 12137 87 9 3 chr9 66190687 66192203 -57883969 + L1_Mus4 LINE L1 5108 6631 -5 5 1090 198 0 0 0 chr9 66192206 66192228 -57883944 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1090 239 294 17 113 chr9 66192251 66192366 -57883806 + MT2B LTR ERVL 166 269 -332 5 1090 558 280 17 0 chr9 66192263 66192381 -57883791 + ID_B1 SINE B4 91 210 -14 5 1090 500 265 59 29 chr9 66192381 66192399 -57883773 + B1F2 SINE Alu 10 149 0 5 1090 222 37 0 0 chr9 66192442 66192469 -57883703 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 1090 1335 80 17 17 chr9 66192471 66192650 -57883522 - B2_Mm2 SINE B2 -14 181 3 5 1090 363 23 0 0 chr9 66192843 66192887 -57883285 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1090 812 10 0 10 chr9 66193521 66193619 -57882553 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 5 1090 439 191 67 11 chr9 66193623 66193713 -57882459 - B1F2 SINE Alu -13 136 42 5 1090 239 276 0 116 chr9 66193656 66193742 -57882430 - 4.5SRNA scRNA scRNA -3 91 16 5 1090 401 253 13 0 chr9 66193935 66194014 -57882158 + ID4_ SINE ID 2 81 -2 5 1090 375 241 32 65 chr9 66194128 66194252 -57881920 + PB1D7 SINE Alu 1 120 0 5 1090 1248 68 0 13 chr9 66194450 66194600 -57881572 + B1_Mus1 SINE Alu 1 148 0 5 1090 198 50 58 70 chr9 66194602 66194688 -57881484 + A-rich Low_complexity Low_complexity 1 85 0 5 1090 261 379 126 19 chr9 66194934 66195141 -57881031 + L2b LINE L2 3147 3375 0 5 1090 726 231 14 0 chr9 66195180 66195327 -57880845 - B1_Mur1 SINE Alu 0 149 1 5 1090 944 257 19 9 chr9 66195956 66196168 -57880004 + B3 SINE B2 2 215 -1 5 1090 680 208 57 14 chr9 66196298 66196478 -57879694 - B3A SINE B2 -1 215 32 5 1090 1358 145 11 26 chr9 66196507 66196776 -57879396 - RMER10B LTR ERVL -133 265 1 5 1090 220 296 110 33 chr9 66196902 66197035 -57879137 - MIRb SINE MIR -67 201 56 5 1090 284 175 19 31 chr9 66197090 66197154 -57879018 - B1_Mur2 SINE Alu -47 102 33 5 1090 522 114 209 0 chr9 66197232 66197337 -57878835 + B1_Mus2 SINE Alu 21 147 0 5 1090 259 221 191 30 chr9 66197346 66197495 -57878677 - B3 SINE B2 -20 178 5 5 1090 205 237 69 88 chr9 66197554 66197656 -57878516 - L2c LINE L2 -7 3380 3281 5 1090 300 111 0 0 chr9 66198247 66198292 -57877880 + (CCG)n Simple_repeat Simple_repeat 2 46 0 5 1090 284 70 23 0 chr9 66199108 66199151 -57877021 + (TATG)n Simple_repeat Simple_repeat 4 47 0 5 1090 231 164 46 62 chr9 66199265 66199330 -57876842 - L1ME4a LINE L1 -93 6031 5968 5 1090 254 262 34 56 chr9 66200464 66200553 -57875619 + ID_B1 SINE B4 98 184 -40 5 1090 464 279 48 48 chr9 66200935 66201082 -57875090 - ID_B1 SINE B4 0 224 78 5 1090 387 187 0 13 chr9 66201085 66201161 -57875011 - PB1D9 SINE Alu 0 120 46 5 1090 544 266 92 51 chr9 66201234 66201527 -57874645 - L1MC4a LINE L1 -360 7522 7218 5 1090 391 238 98 19 chr9 66201555 66201728 -57874444 - L1MC4a LINE L1 -874 7168 6947 5 1090 360 0 0 0 chr9 66201730 66201770 -57874402 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1090 557 270 9 0 chr9 66201771 66201886 -57874286 - RSINE1 SINE B4 -42 123 8 5 1090 1187 62 7 20 chr9 66201893 66202042 -57874130 - B1_Mus2 SINE Alu 0 147 1 5 1090 3178 235 119 7 chr9 66202120 66202990 -57873182 - RCHARR1 DNA MER1_type 0 974 7 5 1090 297 284 11 80 chr9 66202996 66203084 -57873088 + MER2 DNA MER2_type 263 344 -1 5 1090 422 250 111 7 chr9 66203085 66203238 -57872934 - L1MC4a LINE L1 -1257 6625 6457 5 1090 338 294 14 7 chr9 66203312 66203456 -57872716 - L1MC4a LINE L1 -1574 6308 6164 5 1090 598 246 33 0 chr9 66203865 66203987 -57872185 - RSINE1 SINE B4 -38 127 2 5 1090 548 261 0 9 chr9 66204079 66204195 -57871977 - PB1 SINE Alu -7 120 6 5 1090 1088 257 119 45 chr9 66204356 66204759 -57871413 - L1MB5 LINE L1 -71 6103 5671 5 1090 1496 75 38 0 chr9 66204771 66204957 -57871215 - B2_Mm2 SINE B2 0 195 3 5 1090 1229 75 0 0 chr9 66204978 66205125 -57871047 - B1_Mus2 SINE Alu 0 147 1 5 1090 387 0 0 0 chr9 66205204 66205247 -57870925 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1090 295 300 14 0 chr9 66205265 66205335 -57870837 - ID2 SINE ID -11 72 2 5 1090 535 225 9 18 chr9 66205487 66205600 -57870572 - B1_Mur1 SINE Alu -2 147 36 5 1090 356 192 108 14 chr9 66205789 66205863 -57870309 + ID4 SINE ID 2 82 -1 5 1090 180 0 0 0 chr9 66206184 66206204 -57869968 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 1090 336 48 0 0 chr9 66206311 66206353 -57869819 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1090 375 343 100 54 chr9 66206357 66206616 -57869556 - B4 SINE B4 -11 281 11 5 1090 316 264 176 0 chr9 66206609 66206700 -57869472 - PB1D7 SINE Alu -1 119 13 5 1090 209 188 60 45 chr9 66206714 66206781 -57869391 + CT-rich Low_complexity Low_complexity 3 70 0 5 1090 648 232 259 35 chr9 66207398 66207660 -57868512 - RCHARR1 DNA MER1_type -39 935 617 5 1090 207 0 0 0 chr9 66207660 66207683 -57868489 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 5 1090 1275 35 7 0 chr9 66207691 66207833 -57868339 - B1_Mus1 SINE Alu -5 143 1 5 1090 648 232 259 35 chr9 66207833 66207932 -57868240 - RCHARR1 DNA MER1_type -371 603 483 5 1090 665 56 34 0 chr9 66208447 66208536 -57867636 - U6 snRNA snRNA 0 107 16 5 1090 1642 219 124 11 chr9 66208565 66209008 -57867164 - RCHARR1 DNA MER1_type -475 499 7 5 1090 36 60 0 23 chr9 66209377 66209392 -57866780 + AT_rich Low_complexity Low_complexity 1 15 0 5 1090 1497 67 39 0 chr9 66209392 66209572 -57866600 - B2_Mm2 SINE B2 -8 187 1 5 1090 36 60 0 23 chr9 66209572 66209642 -57866530 + AT_rich Low_complexity Low_complexity 1 69 0 5 1090 681 252 0 29 chr9 66209666 66209805 -57866367 - RSINE1 SINE B4 -28 137 3 5 1090 645 243 67 62 chr9 66209991 66210184 -57865988 + B3 SINE B2 17 210 -6 5 1090 857 175 46 0 chr9 66210222 66210416 -57865756 + RCHARR1 DNA MER1_type 670 872 -102 5 1090 231 227 0 0 chr9 66210437 66210481 -57865691 - tRNA-Met tRNA tRNA -32 44 1 5 1090 894 171 0 7 chr9 66211219 66211360 -57864812 + B1_Mus1 SINE Alu 2 141 -7 5 1090 984 72 0 73 chr9 66211458 66211608 -57864564 + B1_Mm SINE Alu 9 147 0 5 1090 21 57 0 0 chr9 66211608 66211643 -57864529 + AT_rich Low_complexity Low_complexity 1 35 0 5 1090 794 205 162 0 chr9 66212186 66212371 -57863801 + B3 SINE B2 2 216 0 5 1090 264 220 20 0 chr9 66212530 66212580 -57863592 + B4A SINE B4 84 134 -158 5 1090 708 120 137 0 chr9 66212536 66212653 -57863519 + B1_Mus2 SINE Alu 6 138 -9 5 1090 222 37 0 0 chr9 66212653 66212680 -57863492 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 5 1090 322 346 109 18 chr9 66213123 66213344 -57862828 - L1ME1 LINE L1 -11 6168 5928 5 1090 259 45 68 0 chr9 66213345 66213389 -57862783 + (CATA)n Simple_repeat Simple_repeat 2 48 0 5 1090 284 282 26 0 chr9 66213408 66213486 -57862686 - PB1D10 SINE Alu 0 117 38 5 1090 732 245 145 97 chr9 66213489 66213655 -57862517 - L1ME1 LINE L1 -277 5902 5766 5 1090 618 235 84 58 chr9 66213655 66213845 -57862327 - B3A SINE B2 0 198 4 5 1090 732 245 145 97 chr9 66213845 66214284 -57861888 - L1ME1 LINE L1 -414 5765 5268 5 1090 371 231 10 90 chr9 66214284 66214384 -57861788 - PB1 SINE Alu 0 127 36 5 1090 33 0 0 0 chr9 66214388 66214421 -57861751 + AT_rich Low_complexity Low_complexity 1 33 0 5 1090 325 142 12 34 chr9 66214433 66214499 -57861673 - B2_Mm2 SINE B2 -83 115 46 5 1090 1335 87 35 0 chr9 66214511 66214684 -57861488 - B2_Mm1t SINE B2 -14 179 1 5 1090 965 155 0 45 chr9 66214751 66214906 -57861266 - B1_Mur3 SINE Alu 0 149 2 5 1090 258 230 26 26 chr9 66214910 66214986 -57861186 - L1MD LINE L1 -875 5271 5196 5 1090 399 106 0 0 chr9 66215017 66215083 -57861089 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1090 522 299 21 42 chr9 66215085 66215228 -57860944 - RSINE1 SINE B4 -22 143 4 5 1090 1010 180 103 0 chr9 66215280 66215474 -57860698 - B3 SINE B2 0 216 3 5 1090 214 50 24 24 chr9 66215559 66215600 -57860572 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1090 415 278 73 21 chr9 66215704 66215982 -57860190 - L1ME1 LINE L1 -1098 5048 4742 5 1090 923 245 82 46 chr9 66216012 66216056 -57860116 - B4A SINE B4 0 292 258 5 1090 348 103 0 0 chr9 66216056 66216114 -57860058 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1090 923 245 82 46 chr9 66216114 66216351 -57859821 - B4A SINE B4 -35 257 1 5 1090 231 320 0 13 chr9 66216372 66216448 -57859724 + CT-rich Low_complexity Low_complexity 3 77 0 5 1090 319 275 36 36 chr9 66216460 66216543 -57859629 - PB1 SINE Alu -7 120 38 5 1090 359 282 12 4 chr9 66216851 66216971 -57859201 + MIR SINE MIR 60 179 -89 6 1090 198 0 0 0 chr9 66217983 66218005 -57858167 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1090 1238 41 0 27 chr9 66218005 66218155 -57858017 - B1_Mm SINE Alu 0 147 2 6 1090 227 175 108 72 chr9 66219402 66219513 -57856659 - L1MD3 LINE L1 -104 7891 7777 6 1090 243 0 0 0 chr9 66220858 66220885 -57855287 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 1090 1160 73 20 0 chr9 66220886 66221036 -57855136 - B2_Mm2 SINE B2 -41 154 2 6 1090 389 257 49 74 chr9 66221080 66221202 -57854970 - PB1D9 SINE Alu 0 120 2 6 1090 583 250 0 0 chr9 66221093 66221205 -57854967 - ID_B1 SINE B4 -33 191 80 6 1090 338 343 111 28 chr9 66221227 66221343 -57854829 - L2a LINE L2 -33 3393 3274 6 1090 1208 195 19 5 chr9 66221343 66221549 -57854623 + B3 SINE B2 1 209 -7 6 1090 338 343 111 28 chr9 66221549 66221720 -57854452 - L2a LINE L2 -153 3273 3082 6 1090 22 35 0 0 chr9 66221852 66221881 -57854291 + AT_rich Low_complexity Low_complexity 1 29 0 6 1090 620 144 135 0 chr9 66221996 66222100 -57854072 - B1_Mur1 SINE Alu -19 130 13 6 1090 270 0 0 0 chr9 66222393 66222423 -57853749 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 6 1090 446 248 15 44 chr9 66222426 66222446 -57853726 - ID_B1 SINE B4 -1 223 93 6 1090 728 174 0 0 chr9 66222446 66222561 -57853611 - B1_Mus2 SINE Alu -21 126 12 6 1090 336 24 0 0 chr9 66222734 66222775 -57853397 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1090 24 0 0 0 chr9 66223300 66223324 -57852848 + AT_rich Low_complexity Low_complexity 1 24 0 6 1090 361 298 0 0 chr9 66224549 66224633 -57851539 + RSINE1 SINE B4 28 111 -54 6 1090 6763 113 69 24 chr9 66224862 66225972 -57850200 - Lx2 LINE L1 -16 6981 5822 6 1090 1470 22 22 0 chr9 66226013 66226193 -57849979 - B2_Mm1t SINE B2 0 193 10 6 1090 1425 65 5 0 chr9 66226194 66226378 -57849794 - Lx2A1 LINE L1 -1168 5840 5656 6 1090 1851 133 25 122 chr9 66226377 66226485 -57849687 + L1_Mm LINE L1 5261 5355 -528 6 1090 1189 55 0 0 chr9 66226485 66226631 -57849541 + B1_Mm SINE Alu 2 147 0 6 1090 1851 133 25 122 chr9 66226631 66226916 -57849256 + L1_Mm LINE L1 5356 5616 -267 6 1090 1216 106 32 0 chr9 66226919 66226954 -57849218 - B2_Mm2 SINE B2 0 195 155 6 1090 468 0 0 0 chr9 66226954 66227006 -57849166 + (TATG)n Simple_repeat Simple_repeat 4 55 0 6 1090 1216 106 32 0 chr9 66227006 66227159 -57849013 - B2_Mm2 SINE B2 -41 154 2 6 1090 515 267 62 138 chr9 66227220 66227378 -57848794 - L1MC5 LINE L1 -792 7169 7033 6 1090 775 168 14 21 chr9 66227378 66227518 -57848654 - B1_Mus2 SINE Alu -8 139 1 6 1090 515 272 61 132 chr9 66227518 66227971 -57848201 - L1MC5 LINE L1 -929 7032 6636 6 1090 452 300 150 51 chr9 66228335 66228749 -57847423 - L1MC4 LINE L1 -4488 1727 1273 6 1090 22 56 0 0 chr9 66228872 66228908 -57847264 + AT_rich Low_complexity Low_complexity 1 36 0 6 1090 634 245 62 56 chr9 66228974 66229169 -57847003 - B3A SINE B2 -2 196 1 6 1090 1124 263 139 28 chr9 66229269 66229766 -57846406 - Lx8 LINE L1 0 7473 6922 6 1090 2644 53 3 6 chr9 66229918 66230257 -57845915 + ORR1A1 LTR MaLR 1 338 -8 6 1090 264 292 21 10 chr9 66230277 66230374 -57845798 + CT-rich Low_complexity Low_complexity 2 99 0 6 1090 22 0 0 0 chr9 66230759 66230781 -57845391 + AT_rich Low_complexity Low_complexity 1 22 0 6 1090 216 158 0 0 chr9 66231330 66231368 -57844804 + T-rich Low_complexity Low_complexity 1 38 0 6 1090 1127 90 101 6 chr9 66231692 66231709 -57844463 - B2_Mm2 SINE B2 0 195 179 6 1090 195 42 0 0 chr9 66231709 66231733 -57844439 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 6 1090 1127 90 101 6 chr9 66231733 66231893 -57844279 - B2_Mm2 SINE B2 -17 178 1 6 1090 558 170 100 0 chr9 66232218 66232318 -57843854 - PB1D9 SINE Alu -8 112 3 6 1090 447 274 25 25 chr9 66233246 66233366 -57842806 + PB1D9 SINE Alu 1 120 0 6 1090 234 191 0 0 chr9 66233483 66233530 -57842642 + T-rich Low_complexity Low_complexity 1 47 0 6 1090 1130 75 0 0 chr9 66233530 66233677 -57842495 - B1_Mus1 SINE Alu 0 148 2 6 1090 204 158 0 0 chr9 66233808 66233846 -57842326 + (CATA)n Simple_repeat Simple_repeat 2 39 0 6 1090 939 205 78 20 chr9 66233960 66234164 -57842008 - B3 SINE B2 0 216 1 6 1090 696 249 30 41 chr9 66234992 66235189 -57840983 + B3A SINE B2 1 195 -3 6 1090 638 123 9 36 chr9 66235224 66235334 -57840838 + B1_Mus1 SINE Alu 22 128 -20 6 1090 896 150 13 7 chr9 66235320 66235474 -57840698 + URR1B DNA MER1_type 71 225 0 6 1090 2742 36 0 9 chr9 66236956 66237291 -57838881 - L1Md_F2 LINE L1 -12 6570 6239 6 1090 952 53 0 0 chr9 66237291 66237405 -57838767 - L1_Mm LINE L1 -297 5586 5473 6 1090 275 286 129 14 chr9 66237800 66237919 -57838253 + PB1D10 SINE Alu 1 125 -2 6 1090 983 66 73 7 chr9 66238190 66238327 -57837845 - B1_Mus2 SINE Alu 0 147 2 6 1090 741 182 0 0 chr9 66238337 66238485 -57837687 + CT-rich Low_complexity Low_complexity 2 149 0 6 1090 250 365 82 10 chr9 66238485 66238582 -57837590 - PB1D10 SINE Alu -13 104 1 6 1090 672 269 77 0 chr9 66238614 66238770 -57837402 + B3A SINE B2 1 168 -30 6 1090 414 0 0 0 chr9 66238771 66238817 -57837355 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1090 186 71 0 0 chr9 66239126 66239154 -57837018 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1090 640 226 0 0 chr9 66239351 66239475 -57836697 - B1_Mur4 SINE Alu -26 124 1 6 1090 250 286 43 0 chr9 66240524 66240594 -57835578 - ID SINE ID -140 84 12 6 1090 2001 150 73 13 chr9 66240684 66241056 -57835116 - ORR1B1 LTR MaLR 0 394 1 6 1090 772 176 42 7 chr9 66241622 66241765 -57834407 - B1_Mur4 SINE Alu 0 150 3 6 1090 310 297 41 55 chr9 66241959 66241993 -57834179 - ID_B1 SINE B4 -1 223 82 6 1090 571 213 0 3 chr9 66241993 66242103 -57834069 - B1_Mur4 SINE Alu -13 107 1 6 1090 234 0 0 0 chr9 66242105 66242131 -57834041 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1090 213 39 0 0 chr9 66243041 66243067 -57833105 + (TAA)n Simple_repeat Simple_repeat 1 26 0 6 1090 575 252 14 9 chr9 66243871 66244056 -57832116 + B4A SINE B4 4 289 -3 6 1090 345 117 0 0 chr9 66244232 66244292 -57831880 + (A)n Simple_repeat Simple_repeat 1 60 0 6 1090 1033 83 14 0 chr9 66244809 66244953 -57831219 + B1_Mus1 SINE Alu 3 148 0 6 1090 459 0 0 0 chr9 66244980 66245031 -57831141 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 6 1090 743 139 41 0 chr9 66245307 66245429 -57830743 - B1_Mus2 SINE Alu -16 131 5 6 1090 225 224 0 0 chr9 66245560 66245618 -57830554 + CT-rich Low_complexity Low_complexity 1 58 0 6 1090 22 0 0 0 chr9 66246526 66246548 -57829624 + AT_rich Low_complexity Low_complexity 1 22 0 6 1090 1305 90 45 0 chr9 66246554 66246732 -57829440 + B2_Mm2 SINE B2 2 187 -8 6 1090 1245 101 28 16 chr9 66246739 66246921 -57829251 + B2_Mm2 SINE B2 2 185 -10 6 1090 300 292 96 78 chr9 66248305 66248420 -57827752 - PB1D7 SINE Alu 0 120 1 6 1090 1199 95 19 41 chr9 66248617 66248871 -57827301 - L1Md_F2 LINE L1 -1095 5878 5637 6 1090 6495 56 10 1 chr9 66248871 66249690 -57826482 + L1Md_F2 LINE L1 5745 6570 -12 6 1090 317 346 28 19 chr9 66249948 66250054 -57826118 + L2a LINE L2 3294 3400 -26 6 1090 351 240 86 74 chr9 66250731 66250893 -57825279 + MER104 DNA Tc2 9 172 -9 6 1090 21 71 0 0 chr9 66251310 66251352 -57824820 + AT_rich Low_complexity Low_complexity 1 42 0 6 1090 1022 236 235 36 chr9 66251352 66252042 -57824130 + L1_Mur3 LINE L1 3798 4647 -1233 6 1090 8353 56 3 6 chr9 66252128 66253280 -57822892 - L1Md_F LINE L1 -1575 2242 1094 6 1090 1066 95 0 0 chr9 66253289 66253437 -57822735 - B1_Mus1 SINE Alu 0 148 1 6 1090 2761 82 8 5 chr9 66253437 66253805 -57822367 - L1VL2 LINE L1 -5681 654 284 6 1090 207 0 0 0 chr9 66253993 66254016 -57822156 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1090 183 263 0 0 chr9 66254017 66254055 -57822117 + MIR SINE MIR 69 106 -102 6 1090 351 347 134 23 chr9 66254367 66254851 -57821321 - L1M5 LINE L1 -2449 3697 3160 6 1090 471 63 0 0 chr9 66254868 66254931 -57821241 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1090 1140 94 6 6 chr9 66254981 66255141 -57821031 + B2_Mm1t SINE B2 1 160 -33 6 1090 225 0 0 0 chr9 66255141 66255166 -57821006 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 1090 324 26 0 0 chr9 66255261 66255299 -57820873 + B2_Mm1a SINE B2 123 160 -33 6 1090 225 0 0 0 chr9 66255299 66255324 -57820848 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 1090 272 167 0 0 chr9 66255324 66255339 -57820833 + B2_Mm2 SINE B2 160 174 -21 6 1090 1033 173 114 0 chr9 66256228 66256430 -57819742 - URR1A DNA MER1_type 0 226 2 6 1090 534 254 59 7 chr9 66256437 66256572 -57819600 + B1F SINE Alu 1 142 -7 6 1090 2102 175 63 15 chr9 66256746 66257141 -57819031 - MTC LTR MaLR -7 414 1 6 1090 31 26 0 0 chr9 66257719 66257757 -57818415 + AT_rich Low_complexity Low_complexity 1 38 0 6 1090 909 144 7 20 chr9 66258434 66258583 -57817589 + B1_Mur4 SINE Alu 1 147 -3 6 1090 659 253 41 0 chr9 66258607 66258753 -57817419 + RSINE1 SINE B4 13 164 -1 6 1090 22 0 0 0 chr9 66258799 66258821 -57817351 + AT_rich Low_complexity Low_complexity 1 22 0 6 1090 414 194 30 176 chr9 66259531 66259662 -57816510 + PB1D7 SINE Alu 1 112 -8 6 1090 376 279 57 9 chr9 66259881 66259986 -57816186 - PB1D10 SINE Alu -5 112 3 6 1090 357 230 239 0 chr9 66260025 66260138 -57816034 + RSINE1 SINE B4 5 144 -21 7 1090 473 171 0 33 chr9 66260156 66260277 -57815895 + C-rich Low_complexity Low_complexity 5 121 0 7 1090 547 300 208 45 chr9 66261117 66261473 -57814699 + L2a LINE L2 2585 2998 -421 7 1090 245 326 83 69 chr9 66261648 66261793 -57814379 + L2a LINE L2 3272 3418 -8 7 1090 230 375 39 0 chr9 66262884 66262988 -57813184 + Tigger12 DNA MER2_type 14 121 -1838 7 1090 692 207 20 46 chr9 66263467 66263601 -57812571 + B1_Mur2 SINE Alu 2 138 -11 7 1090 309 26 0 0 chr9 66263601 66263639 -57812533 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 7 1090 692 207 20 46 chr9 66263639 66263656 -57812516 + B1_Mur2 SINE Alu 139 149 0 7 1090 947 200 48 61 chr9 66265024 66265253 -57810919 + URR1A DNA MER1_type 1 226 0 7 1090 460 199 93 49 chr9 66265275 66265427 -57810745 - MER5A DNA MER1_type -26 163 2 7 1090 321 360 96 60 chr9 66265483 66265952 -57810220 - MER34 LTR ERV1 -39 503 18 7 1090 195 292 12 100 chr9 66267207 66267287 -57808885 + L2 LINE L2 2350 2422 -997 7 1090 26 50 0 0 chr9 66269412 66269452 -57806720 + AT_rich Low_complexity Low_complexity 1 40 0 7 1090 236 204 54 27 chr9 66269832 66269943 -57806229 + (TTATA)n Simple_repeat Simple_repeat 4 117 0 7 1090 250 262 16 16 chr9 66270048 66270110 -57806062 + ID_B1 SINE B4 74 135 -89 7 1090 528 205 48 16 chr9 66271008 66271132 -57805040 + B3A SINE B2 5 132 -66 7 1090 26 93 0 0 chr9 66271251 66271326 -57804846 + AT_rich Low_complexity Low_complexity 1 75 0 7 1090 201 289 19 0 chr9 66272235 66272287 -57803885 - MIR SINE MIR -24 238 186 7 1090 25 51 0 0 chr9 66273067 66273106 -57803066 + AT_rich Low_complexity Low_complexity 1 39 0 7 1090 643 137 97 0 chr9 66273162 66273286 -57802886 - B1_Mur1 SINE Alu 0 149 14 7 1090 379 216 96 74 chr9 66273167 66273302 -57802870 - B4 SINE B4 -73 219 82 7 1090 644 308 97 0 chr9 66273375 66273570 -57802602 + MER58A DNA MER1_type 11 224 0 7 1090 25 31 0 0 chr9 66274061 66274093 -57802079 + AT_rich Low_complexity Low_complexity 1 32 0 7 1090 246 309 0 29 chr9 66274204 66274274 -57801898 - ID4 SINE ID -14 69 2 7 1090 260 301 164 33 chr9 66274300 66274544 -57801628 + B4 SINE B4 1 276 -16 7 1090 482 31 16 0 chr9 66274586 66274650 -57801522 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1090 180 0 0 0 chr9 66274651 66274671 -57801501 + (CCA)n Simple_repeat Simple_repeat 2 21 0 7 1090 245 337 12 0 chr9 66275310 66275396 -57800776 + B4A SINE B4 173 259 -33 7 1090 33 25 0 0 chr9 66275631 66275671 -57800501 + AT_rich Low_complexity Low_complexity 1 40 0 7 1090 276 53 0 0 chr9 66276983 66277021 -57799151 + (TCCCC)n Simple_repeat Simple_repeat 3 40 0 7 1090 534 303 7 21 chr9 66277074 66277219 -57798953 - RSINE1 SINE B4 -7 158 16 7 1090 469 295 33 28 chr9 66277258 66277408 -57798764 - B4A SINE B4 -136 156 9 7 1090 760 164 0 22 chr9 66277474 66277611 -57798561 - B1_Mus2 SINE Alu 0 147 14 7 1090 427 277 28 8 chr9 66277769 66277888 -57798284 + B1F SINE Alu 20 140 -9 7 1090 358 336 35 0 chr9 66278047 66278160 -57798012 + MLT1F1 LTR MaLR 15 131 -438 7 1090 300 318 64 64 chr9 66278176 66278425 -57797747 + L1MD3 LINE L1 7432 7680 -315 7 1090 584 175 17 0 chr9 66278425 66278545 -57797627 + (CATA)n Simple_repeat Simple_repeat 3 124 0 7 1090 324 231 0 0 chr9 66278619 66278697 -57797475 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 7 1090 628 191 158 37 chr9 66278724 66278914 -57797258 - RCHARR1 DNA MER1_type 0 974 762 7 1090 630 312 52 10 chr9 66278997 66279191 -57796981 - B4A SINE B4 -89 203 2 7 1090 233 200 0 0 chr9 66279317 66279357 -57796815 - B1F SINE Alu -8 141 102 7 1090 595 260 129 12 chr9 66279366 66279537 -57796635 + B3A SINE B2 1 191 -7 7 1090 462 250 7 66 chr9 66279550 66279687 -57796485 - RCHARR1 DNA MER1_type -227 747 619 7 1090 271 290 102 44 chr9 66279894 66280031 -57796141 - MIRc SINE MIR -40 228 84 7 1090 4291 137 10 7 chr9 66280075 66280766 -57795406 - Lx2B LINE L1 -3 6997 6305 7 1090 216 189 0 0 chr9 66282329 66282366 -57793806 + GA-rich Low_complexity Low_complexity 1 37 0 7 1090 542 215 43 7 chr9 66282756 66282884 -57793288 - MTE2a LTR MaLR -12 409 247 7 1090 264 208 0 0 chr9 66282898 66282946 -57793226 + MTE2b LTR MaLR 332 379 0 7 1090 549 290 25 19 chr9 66283124 66283282 -57792890 + MIR SINE MIR 97 255 -7 7 1090 189 0 0 0 chr9 66283811 66283832 -57792340 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 1090 266 238 67 56 chr9 66284455 66284544 -57791628 - PB1D10 SINE Alu -18 99 10 7 1090 285 260 0 61 chr9 66284478 66284560 -57791612 - ID_B1 SINE B4 -70 154 78 7 1090 21 57 0 0 chr9 66284708 66284743 -57791429 + AT_rich Low_complexity Low_complexity 1 35 0 7 1090 410 149 122 9 chr9 66286074 66286189 -57789983 - L1MB4 LINE L1 -13 6167 6040 7 1090 288 0 0 0 chr9 66286472 66286504 -57789668 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1090 529 293 124 96 chr9 66288010 66288544 -57787628 - RMER13B LTR ERVK -227 681 96 7 1090 763 295 49 12 chr9 66288720 66288964 -57787208 - MER2 DNA MER2_type -1 344 92 7 1090 193 216 0 105 chr9 66289468 66289525 -57786647 + L2 LINE L2 2531 2581 -838 7 1090 1062 170 199 39 chr9 66289956 66290262 -57785910 + Lx9 LINE L1 7284 7638 -6 7 1090 375 329 85 67 chr9 66290476 66290721 -57785451 - MER68 LTR ERVL -196 367 114 7 1090 225 0 0 0 chr9 66290721 66290746 -57785426 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1090 375 329 85 67 chr9 66290746 66290816 -57785356 - MER68 LTR ERVL -450 113 46 7 1090 488 262 61 15 chr9 66290846 66290978 -57785194 - MER68-int LTR ERVL -1 2989 2852 7 1090 2214 158 45 47 chr9 66291017 66291463 -57784709 - Lx2B LINE L1 -11 6989 6545 7 1090 502 134 74 21 chr9 66291473 66291577 -57784595 - PB1D9 SINE Alu 0 149 7 7 1090 1072 314 119 28 chr9 66291760 66292432 -57783740 - MER68-int LTR ERVL -327 2663 1931 7 1090 598 179 37 9 chr9 66292476 66292583 -57783589 + B3 SINE B2 1 110 -106 7 1090 200 179 53 18 chr9 66292616 66292673 -57783499 + (TATAA)n Simple_repeat Simple_repeat 3 61 0 7 1090 21 36 0 0 chr9 66293151 66293179 -57782993 + AT_rich Low_complexity Low_complexity 1 28 0 7 1090 241 235 46 13 chr9 66294649 66294800 -57781372 + (TA)n Simple_repeat Simple_repeat 1 156 0 7 1090 537 223 0 0 chr9 66294820 66294950 -57781222 + (TA)n Simple_repeat Simple_repeat 1 130 0 7 1090 21 36 0 0 chr9 66295176 66295204 -57780968 + AT_rich Low_complexity Low_complexity 1 28 0 7 1090 214 328 31 0 chr9 66296605 66296669 -57779503 - ID4 SINE ID -10 73 8 7 1090 1031 191 9 32 chr9 66296832 66297048 -57779124 - B3 SINE B2 -5 211 1 7 1090 486 263 59 15 chr9 66297068 66297203 -57778969 - B1F1 SINE Alu -7 142 2 7 1090 33 73 0 0 chr9 66297322 66297390 -57778782 + AT_rich Low_complexity Low_complexity 1 68 0 7 1090 250 307 0 26 chr9 66298131 66298208 -57777964 + Cheshire DNA MER1_type 206 280 -2140 7 1090 742 229 29 0 chr9 66299517 66299657 -57776515 + B1_Mur2 SINE Alu 6 149 0 7 1090 491 311 0 36 chr9 66299954 66300091 -57776081 + ID_B1 SINE B4 83 214 -10 7 1090 984 198 54 10 chr9 66300317 66300521 -57775651 - B3 SINE B2 -2 214 2 7 1090 294 29 0 0 chr9 66300894 66300929 -57775243 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1090 415 314 113 0 chr9 66300929 66301053 -57775119 - B1F1 SINE Alu -11 138 1 7 1090 480 278 44 22 chr9 66301778 66301914 -57774258 - RSINE1 SINE B4 -16 149 11 7 1090 286 250 37 62 chr9 66302351 66302432 -57773740 + ID4 SINE ID 4 82 -1 7 1090 447 35 0 0 chr9 66302586 66302643 -57773529 + (CATA)n Simple_repeat Simple_repeat 1 57 0 7 1090 719 281 57 5 chr9 66302765 66302976 -57773196 - ID_B1 SINE B4 -1 223 2 7 1090 207 0 0 0 chr9 66303138 66303161 -57773011 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1090 1154 68 0 0 chr9 66303165 66303311 -57772861 - B1_Mus1 SINE Alu 0 148 3 7 1090 1135 103 0 6 chr9 66303456 66303622 -57772550 + B2_Mm2 SINE B2 3 167 -28 7 1090 447 68 0 0 chr9 66303622 66303681 -57772491 + (CATA)n Simple_repeat Simple_repeat 2 60 0 7 1090 248 176 0 19 chr9 66304216 66304268 -57771904 + L1MC4 LINE L1 7498 7548 -494 7 1090 295 289 121 0 chr9 66304295 66304378 -57771794 + PB1 SINE Alu 33 125 -2 7 1090 263 295 0 16 chr9 66304389 66304451 -57771721 + ID4_ SINE ID 20 80 -3 7 1090 314 270 174 19 chr9 66304468 66304623 -57771549 + L1MC4 LINE L1 7614 7792 -250 7 1090 1122 61 0 13 chr9 66304705 66304854 -57771318 + B1_Mus2 SINE Alu 1 147 0 7 1090 27 0 0 0 chr9 66304887 66304914 -57771258 + AT_rich Low_complexity Low_complexity 1 27 0 7 1090 263 312 0 13 chr9 66305029 66305107 -57771065 - PB1D10 SINE Alu -40 77 1 7 1090 1029 108 0 0 chr9 66305505 66305681 -57770491 + (TG)n Simple_repeat Simple_repeat 2 177 0 7 1090 625 244 10 86 chr9 66305684 66305881 -57770291 - B3A SINE B2 -16 182 1 7 1090 23 0 0 0 chr9 66306322 66306345 -57769827 + AT_rich Low_complexity Low_complexity 1 23 0 7 1090 908 146 0 7 chr9 66306355 66306493 -57769679 + B1_Mur4 SINE Alu 1 137 -13 7 1090 361 254 24 24 chr9 66306578 66306696 -57769476 - ID4 SINE ID -29 123 11 7 1090 240 269 44 15 chr9 66307325 66307393 -57768779 + ID4_ SINE ID 3 72 -11 7 1090 325 186 94 128 chr9 66307689 66307806 -57768366 + PB1D9 SINE Alu 5 117 -3 7 1090 442 252 93 99 chr9 66307878 66308050 -57768122 + B4 SINE B4 122 292 0 7 1090 189 171 0 0 chr9 66308932 66308967 -57767205 + (CCA)n Simple_repeat Simple_repeat 1 35 0 7 1090 385 236 14 0 chr9 66308967 66309039 -57767133 - ID4 SINE ID -8 75 3 7 1090 40 0 0 0 chr9 66309252 66309292 -57766880 + AT_rich Low_complexity Low_complexity 1 40 0 7 1090 198 0 0 0 chr9 66310977 66310999 -57765173 + (TC)n Simple_repeat Simple_repeat 2 23 0 8 1090 6799 39 0 0 chr9 66311169 66311982 -57764190 - L1Md_T LINE L1 0 6582 5770 8 1090 378 0 0 0 chr9 66312067 66312109 -57764063 + (TA)n Simple_repeat Simple_repeat 1 42 0 8 1090 270 0 0 0 chr9 66312109 66312138 -57764034 + (GA)n Simple_repeat Simple_repeat 2 31 0 8 1090 282 29 0 0 chr9 66312290 66312325 -57763847 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1090 38 0 0 0 chr9 66313424 66313462 -57762710 + AT_rich Low_complexity Low_complexity 1 38 0 8 1090 426 202 0 45 chr9 66313590 66313678 -57762494 - B4A SINE B4 -43 249 166 8 1090 212 194 171 43 chr9 66313618 66313688 -57762484 - B1F SINE Alu -6 143 65 8 1090 983 221 19 9 chr9 66313812 66314022 -57762150 + B3 SINE B2 5 216 0 8 1090 261 0 0 0 chr9 66315922 66315951 -57760221 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1090 414 200 72 21 chr9 66315951 66316041 -57760131 - PB1D7 SINE Alu -10 110 15 8 1090 233 242 43 147 chr9 66316270 66316310 -57759862 + RLTR11A2 LTR ERVK 1 83 -444 8 1090 295 269 0 15 chr9 66316310 66316378 -57759794 - tRNA-Ala-GCA tRNA tRNA -7 68 2 8 1090 234 0 0 0 chr9 66316401 66316427 -57759745 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1090 654 238 45 64 chr9 66317335 66317537 -57758635 - B3A SINE B2 0 198 1 8 1090 440 242 144 8 chr9 66317688 66317813 -57758359 + RSINE1 SINE B4 8 149 -16 8 1090 33 66 0 0 chr9 66318507 66318568 -57757604 + AT_rich Low_complexity Low_complexity 1 61 0 8 1090 1062 257 57 38 chr9 66318922 66319343 -57756829 - L1MA6 LINE L1 -364 5936 5508 8 1090 612 115 26 0 chr9 66320070 66320183 -57755989 + (TCCC)n Simple_repeat Simple_repeat 3 118 0 8 1090 503 216 171 0 chr9 66320183 66320294 -57755878 - RSINE1 SINE B4 -24 141 12 8 1090 364 238 55 0 chr9 66320483 66320589 -57755583 + B1F SINE Alu 2 113 -7 8 1090 212 157 59 0 chr9 66320990 66321041 -57755131 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 8 1090 527 233 0 0 chr9 66321049 66321139 -57755033 - B1_Mur3 SINE Alu -58 91 2 8 1091 972 243 0 14 chr9 66323068 66323285 -57752887 + B3 SINE B2 3 216 0 8 1091 3122 231 96 8 chr9 66324692 66325518 -57750654 - RCHARR1 DNA MER1_type -8 966 69 8 1091 440 51 0 0 chr9 66325526 66325585 -57750587 + B1_Mus2 SINE Alu 88 146 -1 8 1091 327 292 54 128 chr9 66326110 66326298 -57749874 - RMER4A LTR ERVK -303 163 25 8 1091 27 0 0 0 chr9 66326914 66326941 -57749231 + AT_rich Low_complexity Low_complexity 1 27 0 8 1091 353 325 87 23 chr9 66327359 66327532 -57748640 - MIR3 SINE MIR -9 199 16 8 1091 2613 25 0 47 chr9 66327661 66327999 -57748173 - RLTRETN_Mm LTR ERVK 0 322 1 8 1091 337 285 46 0 chr9 66329346 66329429 -57746743 + L1MD3 LINE L1 7802 7888 -107 8 1091 263 104 21 0 chr9 66329429 66329477 -57746695 + (TA)n Simple_repeat Simple_repeat 2 50 0 8 1091 337 295 45 0 chr9 66329477 66329538 -57746634 + L1MD3 LINE L1 7889 7936 -59 8 1091 1232 35 0 0 chr9 66330033 66330176 -57745996 - B1_Mm SINE Alu -4 143 1 8 1091 1657 31 0 0 chr9 66330644 66330837 -57745335 + B2_Mm1t SINE B2 1 193 0 8 1091 226 300 34 10 chr9 66330942 66331043 -57745129 - MIR SINE MIR -72 204 93 8 1091 336 317 18 46 chr9 66331229 66331338 -57744834 + PB1 SINE Alu 2 107 -20 8 1091 337 275 0 0 chr9 66333334 66333403 -57742769 + RMER30 DNA MER1_type 133 201 -1 8 1091 196 53 53 0 chr9 66335085 66335123 -57741049 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1091 394 273 44 35 chr9 66335173 66335287 -57740885 + PB1D10 SINE Alu 1 115 -2 8 1091 1680 42 0 0 chr9 66336052 66336245 -57739927 - B2_Mm1a SINE B2 0 193 1 8 1091 387 299 135 28 chr9 66337899 66338040 -57738132 + RSINE1 SINE B4 6 161 -4 8 1091 28 22 0 22 chr9 66338066 66338077 -57738095 + AT_rich Low_complexity Low_complexity 1 11 0 8 1091 756 282 10 5 chr9 66338077 66338273 -57737899 + B3A SINE B2 2 198 0 8 1091 28 22 0 22 chr9 66338273 66338307 -57737865 + AT_rich Low_complexity Low_complexity 1 34 0 8 1091 3272 59 2 2 chr9 66339259 66339669 -57736503 - L1_Mus2 LINE L1 0 6566 6157 8 1091 213 121 0 0 chr9 66340678 66340711 -57735461 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 8 1091 1191 48 7 0 chr9 66340711 66340857 -57735315 - B1_Mus2 SINE Alu 0 147 1 8 1091 395 292 14 35 chr9 66341441 66341465 -57734707 + ID_B1 SINE B4 78 216 -8 8 1091 620 195 8 0 chr9 66341465 66341583 -57734589 + B1_Mur1 SINE Alu 23 141 -8 8 1091 466 229 180 0 chr9 66341644 66341766 -57734406 + B1_Mur4 SINE Alu 1 144 -6 8 1091 925 254 33 20 chr9 66341981 66342253 -57733919 + B4 SINE B4 2 288 -4 8 1091 501 47 0 0 chr9 66342635 66342699 -57733473 + (TC)n Simple_repeat Simple_repeat 2 65 0 8 1091 194 0 0 37 chr9 66342703 66342730 -57733442 + (TTTTTG)n Simple_repeat Simple_repeat 6 31 0 8 1091 1228 28 14 0 chr9 66342730 66342875 -57733297 - B1_Mus2 SINE Alu 0 147 1 8 1091 323 257 27 0 chr9 66343008 66343082 -57733090 - ID_B1 SINE B4 -7 217 142 8 1091 1730 175 67 6 chr9 66343168 66343512 -57732660 - ORR1C1 LTR MaLR -13 365 1 8 1091 480 272 208 0 chr9 66345888 66346061 -57730111 + B3 SINE B2 3 211 -5 8 1091 599 285 111 53 chr9 66348167 66348342 -57727830 + B4A SINE B4 38 227 -65 8 1091 650 220 43 0 chr9 66348342 66348483 -57727689 + B1_Mur1 SINE Alu 1 147 -2 8 1091 599 285 111 53 chr9 66348483 66348533 -57727639 + B4A SINE B4 228 276 -16 8 1091 353 153 24 0 chr9 66350830 66350915 -57725257 + GA-rich Low_complexity Low_complexity 6 92 0 8 1091 789 152 0 27 chr9 66350919 66351029 -57725143 + polypurine Low_complexity Low_complexity 1 108 0 8 1091 990 135 0 0 chr9 66351029 66351207 -57724965 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 8 1091 789 152 0 27 chr9 66351207 66351279 -57724893 + polypurine Low_complexity Low_complexity 109 178 0 8 1091 215 173 19 0 chr9 66351280 66351332 -57724840 + GA-rich Low_complexity Low_complexity 6 58 0 8 1091 1303 120 82 0 chr9 66353686 66353894 -57722278 - URR1A DNA MER1_type 0 226 2 8 1091 308 171 171 0 chr9 66354544 66354625 -57721547 + PB1D10 SINE Alu 9 103 -14 8 1091 1894 143 3 9 chr9 66354625 66354949 -57721223 - ORR1A2 LTR MaLR 0 327 6 8 1091 678 214 63 0 chr9 66355101 66355227 -57720945 + B1_Mur1 SINE Alu 1 134 -15 8 1091 24 0 0 0 chr9 66355245 66355269 -57720903 + AT_rich Low_complexity Low_complexity 1 24 0 8 1091 609 163 218 8 chr9 66355280 66355404 -57720768 + B1_Mur4 SINE Alu 1 150 0 8 1091 308 156 15 15 chr9 66361414 66361479 -57714693 - MER53 DNA hAT -128 65 1 8 1091 180 0 0 0 chr9 66363424 66363444 -57712728 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1091 1168 55 0 7 chr9 66363444 66363592 -57712580 - B1_Mm SINE Alu 0 147 1 8 1091 216 0 0 0 chr9 66366408 66366432 -57709740 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1091 704 167 71 0 chr9 66366462 66366588 -57709584 + B1_Mur2 SINE Alu 6 140 -9 8 1091 1082 42 0 0 chr9 66368648 66368790 -57707382 + B1_Mus2 SINE Alu 6 147 0 8 1091 1026 53 0 0 chr9 66369283 66369416 -57706756 - B1_Mus1 SINE Alu -9 139 7 8 1091 340 202 114 3 chr9 66370211 66370329 -57705843 + L1M3 LINE L1 4128 4258 -1888 8 1091 265 221 91 23 chr9 66370335 66370423 -57705749 + L1MC LINE L1 4520 4613 -1533 8 1091 357 259 155 15 chr9 66370782 66370982 -57705190 + L1M3 LINE L1 4251 4478 -1665 8 1091 1166 126 115 5 chr9 66371120 66371320 -57704852 - URR1B DNA MER1_type 0 225 4 8 1091 311 188 0 15 chr9 66372092 66372157 -57704015 - B1F SINE Alu 0 149 86 8 1091 463 309 120 5 chr9 66372400 66372592 -57703580 - B4 SINE B4 -8 284 71 8 1091 386 261 45 9 chr9 66374145 66374257 -57701915 + B1_Mus2 SINE Alu 3 118 -29 8 1091 1116 86 80 11 chr9 66375522 66375698 -57700474 + B2_Mm2 SINE B2 1 188 -7 8 1091 461 194 89 3 chr9 66376027 66376140 -57700032 + B1_Mur2 SINE Alu 17 135 -14 8 1091 213 39 0 0 chr9 66376140 66376166 -57700006 + (TAA)n Simple_repeat Simple_repeat 2 27 0 8 1091 2259 63 33 9 chr9 66376745 66377082 -57699090 + MTB LTR MaLR 1 345 -55 8 1091 655 140 0 50 chr9 66377134 66377254 -57698918 - B1_Mus1 SINE Alu -34 114 1 8 1091 22 35 0 0 chr9 66377437 66377466 -57698706 + AT_rich Low_complexity Low_complexity 1 29 0 8 1091 272 169 41 27 chr9 66377762 66377835 -57698337 + PB1D9 SINE Alu 47 120 0 8 1091 777 281 8 74 chr9 66378694 66378951 -57697221 + B4A SINE B4 6 245 -47 8 1091 23 0 0 0 chr9 66378952 66378975 -57697197 + AT_rich Low_complexity Low_complexity 1 23 0 8 1091 4633 64 0 0 chr9 66378975 66379541 -57696631 - L1_Mus1 LINE L1 0 6567 6002 8 1091 512 183 165 8 chr9 66379551 66379672 -57696500 + B1_Mus1 SINE Alu 1 140 -8 8 1091 180 0 0 0 chr9 66379684 66379704 -57696468 + (GGA)n Simple_repeat Simple_repeat 3 22 0 8 1091 414 0 0 0 chr9 66379778 66379824 -57696348 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 1091 21 71 0 0 chr9 66379931 66379973 -57696199 + AT_rich Low_complexity Low_complexity 1 42 0 8 1091 1718 91 51 0 chr9 66379984 66380259 -57695913 + RMER6C LTR ERVK 3 291 -399 8 1091 305 24 24 0 chr9 66380269 66380311 -57695861 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 8 1091 1258 53 0 0 chr9 66380311 66380471 -57695701 - B2_Mm1a SINE B2 -32 161 2 8 1091 1550 148 121 64 chr9 66380471 66380861 -57695311 + RMER6C LTR ERVK 279 690 0 8 1091 4417 118 43 11 chr9 66381154 66382177 -57693995 + Lx3C LINE L1 5303 6345 -631 9 1091 1966 125 6 15 chr9 66382201 66382526 -57693646 + L1_Mur2 LINE L1 5133 5454 -423 9 1091 931 86 0 0 chr9 66382523 66382640 -57693532 - L1_Mm LINE L1 -319 5564 5448 9 1091 5467 152 8 2 chr9 66382637 66383534 -57692638 - L1_Mm LINE L1 -751 5132 4231 9 1091 401 0 20 0 chr9 66383829 66383878 -57692294 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 9 1091 270 221 44 0 chr9 66384145 66384213 -57691959 + B1F2 SINE Alu 5 75 -74 9 1091 3766 174 51 4 chr9 66385467 66386020 -57690152 + Lx5 LINE L1 6336 6905 -145 9 1091 236 30 0 29 chr9 66386020 66386054 -57690118 + (TGG)n Simple_repeat Simple_repeat 1 33 0 9 1091 3766 174 51 4 chr9 66386054 66386182 -57689990 + Lx5 LINE L1 6906 7048 -2 9 1091 1501 72 0 15 chr9 66386389 66386586 -57689586 - B2_Mm2 SINE B2 0 195 2 9 1091 805 189 193 6 chr9 66387467 66387648 -57688524 + B3 SINE B2 2 216 0 9 1091 265 273 111 92 chr9 66389204 66389357 -57686815 + MLT1N2 LTR MaLR 192 347 -215 9 1091 483 316 76 0 chr9 66390703 66390874 -57685298 - ID_B1 SINE B4 -37 187 4 9 1091 275 0 0 28 chr9 66392559 66392595 -57683577 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1091 2391 157 40 12 chr9 66392629 66393030 -57683142 + MTC LTR MaLR 1 412 -9 9 1091 596 195 130 0 chr9 66393108 66393231 -57682941 + B1_Mur1 SINE Alu 2 140 -9 9 1091 512 232 46 46 chr9 66393273 66393404 -57682768 + B1_Mus2 SINE Alu 11 141 -6 9 1091 25 0 0 0 chr9 66393671 66393696 -57682476 + AT_rich Low_complexity Low_complexity 1 25 0 9 1091 918 144 72 0 chr9 66393731 66393884 -57682288 + URR1A DNA MER1_type 1 164 -62 9 1091 2398 31 60 39 chr9 66394720 66395051 -57681121 + ORR1A1 LTR MaLR 1 338 -8 9 1091 193 127 55 0 chr9 66395571 66395626 -57680546 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 9 1091 515 278 199 3 chr9 66397560 66397842 -57678330 + Charlie5 DNA MER1_type 122 458 -2166 9 1091 1381 44 58 32 chr9 66398131 66398319 -57677853 + B2_Mm2 SINE B2 1 193 -2 9 1091 494 266 88 0 chr9 66398350 66398463 -57677709 + B1_Mur1 SINE Alu 2 124 -25 9 1091 183 80 0 0 chr9 66398466 66398491 -57677681 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 9 1091 283 232 14 14 chr9 66398500 66398570 -57677602 + Charlie5 DNA MER1_type 1160 1229 -1395 9 1091 355 175 186 0 chr9 66398578 66398675 -57677497 + Lx7 LINE L1 7553 7667 -29 9 1091 582 179 54 24 chr9 66398753 66398919 -57677253 - Lx9 LINE L1 -32 7612 7442 9 1091 551 179 142 17 chr9 66398918 66399094 -57677078 - Lx7 LINE L1 -129 7567 7370 9 1091 488 145 30 22 chr9 66399096 66399230 -57676942 + GA-rich Low_complexity Low_complexity 3 137 0 9 1091 5777 195 60 22 chr9 66399248 66400621 -57675551 - Lx7 LINE L1 -328 7368 5944 9 1091 400 168 9 122 chr9 66400690 66400805 -57675367 + MT2B LTR ERVL 163 264 -337 9 1091 1045 23 8 0 chr9 66400704 66400834 -57675338 + B1_Mus2 SINE Alu 11 141 -6 9 1091 195 42 0 0 chr9 66400837 66400861 -57675311 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 9 1091 623 218 60 66 chr9 66401252 66401434 -57674738 + B3 SINE B2 36 216 0 9 1091 405 94 131 6 chr9 66401724 66401808 -57674364 + B1_Mur2 SINE Alu 69 149 0 9 1091 7646 120 12 10 chr9 66402043 66404063 -57672109 - Lx LINE L1 0 6654 4641 9 1091 180 0 0 0 chr9 66404063 66404083 -57672089 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 1091 7646 148 7 20 chr9 66404083 66404222 -57671950 - Lx LINE L1 -1243 4640 4499 9 1091 575 61 0 0 chr9 66404219 66404301 -57671871 - MusHAL1 LINE L1 -1924 788 707 9 1091 996 97 10 102 chr9 66405067 66405263 -57670909 + B2_Mm1a SINE B2 2 179 -14 9 1091 231 253 10 87 chr9 66405785 66405817 -57670355 + ID_B1 SINE B4 121 216 -8 9 1091 290 208 194 0 chr9 66405817 66405889 -57670283 + PB1D7 SINE Alu 27 112 -8 9 1091 901 151 14 0 chr9 66405927 66406073 -57670099 + B1_Mus1 SINE Alu 1 148 0 9 1091 24 32 0 0 chr9 66406120 66406151 -57670021 + AT_rich Low_complexity Low_complexity 1 31 0 9 1091 306 0 0 0 chr9 66406654 66406688 -57669484 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1091 1251 34 0 0 chr9 66406688 66406834 -57669338 - B1_Mus2 SINE Alu 0 147 2 9 1091 533 253 174 32 chr9 66407350 66407603 -57668569 + B4 SINE B4 2 290 -2 9 1091 350 283 18 62 chr9 66407683 66407796 -57668376 + PB1D10 SINE Alu 1 108 -9 9 1091 22 0 0 0 chr9 66407796 66407818 -57668354 + AT_rich Low_complexity Low_complexity 1 22 0 9 1091 1317 53 18 6 chr9 66408984 66409154 -57667018 + B2_Mm2 SINE B2 2 173 -22 9 1091 476 32 0 16 chr9 66409155 66409218 -57666954 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 9 1091 226 238 312 0 chr9 66409559 66409639 -57666533 + PB1D10 SINE Alu 4 108 -9 9 1091 369 279 36 0 chr9 66410037 66410148 -57666024 - PB1D10 SINE Alu -2 115 1 9 1091 22 0 0 0 chr9 66410508 66410530 -57665642 + AT_rich Low_complexity Low_complexity 1 22 0 9 1091 398 372 76 0 chr9 66411180 66411325 -57664847 - RSINE1 SINE B4 -7 158 3 9 1091 249 296 104 0 chr9 66411823 66411938 -57664234 + MIR SINE MIR 71 197 -65 9 1091 22 35 0 0 chr9 66412375 66412404 -57663768 + AT_rich Low_complexity Low_complexity 1 29 0 9 1091 427 237 202 8 chr9 66413563 66413682 -57662490 - B1F SINE Alu -7 142 1 9 1091 813 261 82 0 chr9 66413854 66414049 -57662123 - ID_B1 SINE B4 -9 215 5 9 1091 2372 64 51 9 chr9 66415256 66415587 -57660585 + L1_Mus4 LINE L1 6287 6631 -5 9 1091 403 63 0 31 chr9 66415592 66415657 -57660515 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 9 1091 278 292 0 65 chr9 66415741 66415818 -57660354 + ID4 SINE ID 12 83 0 9 1091 842 170 14 7 chr9 66416752 66416894 -57659278 + B1_Mur4 SINE Alu 2 144 -6 9 1091 695 233 104 16 chr9 66417146 66417338 -57658834 + B3 SINE B2 2 210 -6 9 1091 225 83 0 0 chr9 66417695 66417731 -57658441 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1091 358 307 103 31 chr9 66417806 66418001 -57658171 - MIR SINE MIR -5 257 49 9 1091 296 340 0 40 chr9 66418061 66418162 -57658010 - PB1D10 SINE Alu -18 99 3 9 1091 436 291 8 91 chr9 66418189 66418310 -57657862 - PB1 SINE Alu -2 125 6 9 1091 797 199 0 7 chr9 66418440 66418582 -57657590 + B1_Mur3 SINE Alu 1 141 -8 9 1091 26 30 0 0 chr9 66418829 66418862 -57657310 + AT_rich Low_complexity Low_complexity 1 33 0 9 1091 3131 31 33 5 chr9 66418982 66419371 -57656801 + MTB LTR MaLR 1 400 0 9 1091 204 40 0 0 chr9 66420528 66420553 -57655619 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1091 695 148 13 129 chr9 66421549 66421704 -57654468 + B1_Mur4 SINE Alu 7 143 -7 9 1091 834 164 111 17 chr9 66422022 66422202 -57653970 + B3 SINE B2 1 197 -19 9 1091 630 292 14 38 chr9 66422421 66422626 -57653546 - B3A SINE B2 -15 201 2 9 1091 808 272 45 49 chr9 66422632 66422856 -57653316 - B4A SINE B4 -67 225 3 9 1091 248 260 118 55 chr9 66422955 66423065 -57653107 - PB1D10 SINE Alu 0 117 1 9 1091 228 67 0 0 chr9 66424146 66424176 -57651996 + (TAA)n Simple_repeat Simple_repeat 1 30 0 9 1091 478 237 0 20 chr9 66424386 66424485 -57651687 + B4 SINE B4 1 97 -195 9 1091 805 141 28 14 chr9 66424486 66424630 -57651542 + B1_Mur3 SINE Alu 3 148 -1 9 1091 600 284 6 134 chr9 66424658 66424829 -57651343 + B4A SINE B4 86 234 -58 9 1091 431 215 25 0 chr9 66424854 66424933 -57651239 + RSINE1 SINE B4 47 127 -38 9 1091 332 266 0 12 chr9 66424955 66425035 -57651137 + B4A SINE B4 214 292 0 9 1091 423 330 64 4 chr9 66425388 66425669 -57650503 + L1MC4 LINE L1 6344 6650 -1392 9 1091 954 249 116 17 chr9 66425709 66426114 -57650058 + L1MC4 LINE L1 6775 7219 -823 9 1091 459 0 0 0 chr9 66426149 66426200 -57649972 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1091 396 0 0 0 chr9 66426250 66426294 -57649878 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 9 1091 239 244 0 0 chr9 66426376 66426421 -57649751 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1091 732 294 25 0 chr9 66426421 66426625 -57649547 - Lx8 LINE L1 -160 7313 7105 9 1091 195 42 0 0 chr9 66426655 66426679 -57649493 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1091 529 38 100 0 chr9 66426861 66426941 -57649231 + L1Md_F2 LINE L1 6483 6570 -12 9 1091 235 274 26 52 chr9 66427365 66427407 -57648765 + MT2B2 LTR ERVL 218 257 -327 9 1091 614 91 130 10 chr9 66427407 66427448 -57648724 + B1_Mus2 SINE Alu 1 41 -106 9 1091 183 80 0 0 chr9 66427448 66427473 -57648699 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 9 1091 614 91 130 10 chr9 66427473 66427531 -57648641 + B1_Mus2 SINE Alu 42 112 -35 9 1091 1864 163 125 8 chr9 66427546 66427899 -57648273 + ORR1B1 LTR MaLR 1 394 0 9 1091 1328 155 4 0 chr9 66427899 66428131 -57648041 + ORR1B1-int LTR MaLR 1 233 -1276 9 1091 592 252 25 38 chr9 66428227 66428384 -57647788 + RSINE1 SINE B4 5 159 -6 9 1091 1309 89 83 0 chr9 66428492 66428672 -57647500 + B2_Mm2 SINE B2 1 195 0 9 1091 189 0 0 0 chr9 66428684 66428705 -57647467 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1091 961 167 5 31 chr9 66428976 66429168 -57647004 - B2_Mm2 SINE B2 -8 187 1 9 1091 1412 28 51 0 chr9 66429179 66429355 -57646817 - B2_Mm2 SINE B2 -9 186 2 9 1091 926 203 73 0 chr9 66430474 66430666 -57645506 - B3 SINE B2 -10 206 1 9 1091 216 67 0 0 chr9 66430693 66430723 -57645449 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 9 1091 1219 28 7 0 chr9 66430723 66430868 -57645304 - B1_Mus1 SINE Alu 0 148 3 9 1091 480 231 34 75 chr9 66431168 66431320 -57644852 - B3A SINE B2 -2 196 49 9 1091 879 149 14 7 chr9 66431722 66431864 -57644308 + B1_Mus1 SINE Alu 6 148 0 9 1091 1094 184 34 5 chr9 66432062 66432269 -57643903 - B3 SINE B2 -3 213 1 9 1091 370 271 12 12 chr9 66432413 66432499 -57643673 + PB1D7 SINE Alu 1 86 -34 9 1091 685 178 108 0 chr9 66433045 66433174 -57642998 - B1_Mur4 SINE Alu -1 149 7 1 1091 24 0 0 0 chr9 66433654 66433678 -57642494 + AT_rich Low_complexity Low_complexity 1 24 0 1 1091 212 274 20 0 chr9 66434984 66435035 -57641137 + RSINE1 SINE B4 2 53 -112 1 1091 22 0 0 0 chr9 66435112 66435134 -57641038 + AT_rich Low_complexity Low_complexity 1 22 0 1 1091 279 341 0 42 chr9 66436907 66437002 -57639170 + Charlie1b DNA MER1_type 8 98 -425 1 1091 829 178 20 0 chr9 66437067 66437213 -57638959 - B1_Mur3 SINE Alu 0 149 1 1 1091 486 274 137 52 chr9 66437218 66437354 -57638818 + Charlie1b DNA MER1_type 101 230 -293 1 1091 198 0 0 0 chr9 66437354 66437376 -57638796 + (TGG)n Simple_repeat Simple_repeat 3 24 0 1 1091 486 274 137 52 chr9 66437376 66437605 -57638567 + Charlie1b DNA MER1_type 231 497 -26 1 1091 246 81 0 0 chr9 66438232 66438269 -57637903 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 1091 243 0 0 0 chr9 66438957 66438984 -57637188 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1091 450 245 19 9 chr9 66439171 66439278 -57636894 + PB1D10 SINE Alu 3 110 -7 1 1091 227 131 21 21 chr9 66440399 66440446 -57635726 + (CCGCG)n Simple_repeat Simple_repeat 5 51 0 1 1091 226 322 11 11 chr9 66441636 66441730 -57634442 - MIRb SINE MIR -49 219 126 1 1091 211 293 120 0 chr9 66442861 66442936 -57633236 + L2b LINE L2 3220 3303 -72 1 1091 965 60 113 0 chr9 66442956 66443089 -57633083 - B1_Mus1 SINE Alu 0 148 1 1 1091 192 40 0 0 chr9 66444447 66444472 -57631700 + (ACTG)n Simple_repeat Simple_repeat 2 26 0 1 1091 468 0 0 0 chr9 66444907 66444959 -57631213 + (TCC)n Simple_repeat Simple_repeat 1 52 0 1 1091 191 280 226 32 chr9 66445286 66445441 -57630731 - MIRb SINE MIR 0 268 84 1 1091 399 211 13 0 chr9 66445638 66445714 -57630458 - PB1D10 SINE Alu -1 116 40 1 1091 785 182 36 0 chr9 66445894 66446031 -57630141 - B1_Mus1 SINE Alu -6 142 1 1 1091 282 56 0 0 chr9 66446218 66446254 -57629918 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1091 975 163 120 10 chr9 66446876 66447068 -57629104 - B3 SINE B2 0 216 4 1 1091 608 277 0 28 chr9 66447112 66447253 -57628919 - ID_B1 SINE B4 -6 218 82 1 1091 242 0 0 0 chr9 66447325 66447416 -57628756 + L1Md_A LINE L1 6545 6582 0 1 1091 1377 157 5 5 chr9 66448335 66448552 -57627620 - URR1B DNA MER1_type 0 225 9 1 1091 486 336 56 0 chr9 66449715 66449858 -57626314 + RSINE1 SINE B4 8 158 -7 1 1091 312 27 0 0 chr9 66449859 66449896 -57626276 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1091 1187 68 7 0 chr9 66449921 66450068 -57626104 + B1_Mus1 SINE Alu 1 148 0 1 1091 282 116 0 0 chr9 66450379 66450422 -57625750 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1091 988 68 75 0 chr9 66450425 66450558 -57625614 - B1_Mm SINE Alu 0 147 5 1 1091 1185 140 0 45 chr9 66450575 66450777 -57625395 - B2_Mm2 SINE B2 -2 193 1 1 1091 374 114 0 14 chr9 66450912 66450983 -57625189 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1091 576 176 59 0 chr9 66450983 66451085 -57625087 + PB1D10 SINE Alu 1 108 -9 1 1091 217 291 0 48 chr9 66451418 66451501 -57624671 + CT-rich Low_complexity Low_complexity 4 82 0 1 1091 927 221 165 11 chr9 66452238 66452517 -57623655 + MTC LTR MaLR 85 406 -15 1 1091 240 302 38 45 chr9 66452609 66452748 -57623424 + MIRc SINE MIR 48 183 -79 1 1092 264 278 14 14 chr9 66453776 66453849 -57622323 - MIR3 SINE MIR -33 175 103 1 1092 231 61 0 0 chr9 66455157 66455190 -57620982 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1092 1000 122 0 22 chr9 66455447 66455631 -57620541 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1092 1008 198 6 17 chr9 66455646 66455826 -57620346 - B3A SINE B2 -20 178 1 1 1092 850 304 13 13 chr9 66455826 66456056 -57620116 - B4A SINE B4 -61 231 2 1 1092 248 292 115 0 chr9 66456456 66456552 -57619620 - MER2 DNA MER2_type -151 194 88 1 1092 581 183 141 8 chr9 66456666 66456787 -57619385 - B1_Mur3 SINE Alu -12 137 1 1 1092 244 284 68 0 chr9 66457049 66457123 -57619049 + ID4_ SINE ID 4 82 -1 1 1092 829 231 37 5 chr9 66457154 66457341 -57618831 + B3A SINE B2 1 193 -5 1 1092 423 0 0 0 chr9 66457385 66457432 -57618740 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1092 770 209 0 117 chr9 66457433 66457639 -57618533 - B3A SINE B2 -16 182 1 1 1092 27 0 0 0 chr9 66457641 66457668 -57618504 + AT_rich Low_complexity Low_complexity 1 27 0 1 1092 1446 69 21 0 chr9 66457908 66458097 -57618075 + B2_Mm2 SINE B2 2 194 -1 1 1092 180 0 0 0 chr9 66458124 66458144 -57618028 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1092 1177 48 0 0 chr9 66458144 66458291 -57617881 - B1_Mus1 SINE Alu 0 148 2 1 1092 656 159 38 0 chr9 66458291 66458410 -57617762 + B1_Mur2 SINE Alu 14 143 -6 1 1092 413 215 102 9 chr9 66458846 66458954 -57617218 + RSINE1 SINE B4 2 119 -46 1 1092 335 319 0 11 chr9 66459047 66459142 -57617030 + PB1D10 SINE Alu 4 97 -20 1 1092 243 0 0 0 chr9 66459161 66459188 -57616984 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1 1092 224 328 15 0 chr9 66460237 66460304 -57615868 + RSINE1 SINE B4 4 71 -94 1 1092 278 281 31 10 chr9 66460370 66460467 -57615705 + L1MB5 LINE L1 5788 5886 -288 1 1092 2276 95 112 3 chr9 66460471 66460819 -57615353 - ORR1B1 LTR MaLR -8 386 1 1 1092 1457 77 0 5 chr9 66460869 66461064 -57615108 + B2_Mm2 SINE B2 2 195 0 1 1092 751 199 7 0 chr9 66461077 66461213 -57614959 - B1_Mus1 SINE Alu -11 137 1 1 1092 322 225 22 11 chr9 66461214 66461304 -57614868 + L1MB5 LINE L1 5894 5984 -190 1 1092 276 291 17 50 chr9 66461322 66461478 -57614694 + L1MB5 LINE L1 6019 6174 -9 1 1092 267 31 0 0 chr9 66461799 66461831 -57614341 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1092 844 200 91 15 chr9 66462358 66462556 -57613616 - B3 SINE B2 0 216 4 1 1092 24 32 0 0 chr9 66462808 66462839 -57613333 + AT_rich Low_complexity Low_complexity 1 31 0 1 1092 261 289 145 0 chr9 66463295 66463371 -57612801 + Charlie1 DNA MER1_type 3 89 -2692 1 1092 491 340 104 44 chr9 66463417 66463572 -57612600 + Charlie1 DNA MER1_type 2332 2485 -296 1 1092 769 233 28 0 chr9 66463572 66463748 -57612424 - B3A SINE B2 -17 181 1 1 1092 491 340 104 44 chr9 66463748 66463841 -57612331 + Charlie1 DNA MER1_type 2486 2595 -186 1 1092 285 219 0 59 chr9 66463969 66464037 -57612135 - U2 snRNA snRNA -124 64 1 1 1092 426 306 0 67 chr9 66464072 66464191 -57611981 - RSINE1 SINE B4 0 165 55 1 1092 459 0 0 0 chr9 66464232 66464283 -57611889 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1092 269 293 59 20 chr9 66464304 66464332 -57611840 - B2_Mm2 SINE B2 -90 105 27 1 1092 320 203 61 30 chr9 66464332 66464398 -57611774 - RSINE1 SINE B4 -87 78 11 1 1092 437 164 36 44 chr9 66464396 66464506 -57611666 - B4 SINE B4 -46 246 130 1 1092 228 304 96 19 chr9 66465051 66465155 -57611017 + MamRep564 Unknown Unknown 62 173 -184 1 1092 496 241 86 0 chr9 66465173 66465289 -57610883 - ID_B1 SINE B4 -94 130 5 1 1092 362 312 71 43 chr9 66465291 66465475 -57610697 + MIRb SINE MIR 49 237 -31 1 1092 381 22 0 0 chr9 66465858 66465904 -57610268 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1092 897 89 110 7 chr9 66466412 66466548 -57609624 + B1_Mur4 SINE Alu 1 150 0 1 1092 504 275 36 7 chr9 66466866 66467005 -57609167 + B1F SINE Alu 6 148 -1 1 1092 991 262 64 0 chr9 66467022 66467289 -57608883 + B4A SINE B4 2 285 -7 1 1092 604 283 12 12 chr9 66467345 66467506 -57608666 + RSINE1 SINE B4 3 163 -2 1 1092 323 280 0 0 chr9 66467550 66467625 -57608547 + ID4_ SINE ID 1 75 -8 1 1092 732 191 0 0 chr9 66467892 66468065 -57608107 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 1092 230 293 0 0 chr9 66469103 66469184 -57606988 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1092 487 294 42 116 chr9 66469200 66469389 -57606783 - B4 SINE B4 -87 205 31 1 1092 196 291 135 34 chr9 66469710 66469799 -57606373 + MIRc SINE MIR 46 143 -125 1 1092 455 270 24 0 chr9 66469819 66469945 -57606227 + L1MB5 LINE L1 6046 6174 0 1 1092 677 268 79 32 chr9 66470858 66471024 -57605148 + B3A SINE B2 1 181 -17 1 1092 367 52 17 17 chr9 66471024 66471083 -57605089 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1092 677 268 79 32 chr9 66471083 66471105 -57605067 + B3A SINE B2 182 198 0 1 1092 870 175 0 20 chr9 66471119 66471265 -57604907 + B1_Mus1 SINE Alu 1 143 -5 1 1092 339 82 0 0 chr9 66471733 66471763 -57604409 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1092 1234 54 0 0 chr9 66471763 66471910 -57604262 + B1_Mm SINE Alu 1 147 0 1 1092 339 82 0 0 chr9 66471910 66471928 -57604244 + (A)n Simple_repeat Simple_repeat 1 18 0 1 1092 225 286 131 0 chr9 66472480 66472564 -57603608 + MIRb SINE MIR 47 141 -127 1 1092 291 280 98 53 chr9 66473212 66473344 -57602828 + MER5A DNA MER1_type 16 153 -36 1 1092 286 269 250 9 chr9 66473476 66473592 -57602580 + MIRb SINE MIR 43 186 -82 1 1092 340 286 71 10 chr9 66474219 66474318 -57601854 - PB1D10 SINE Alu -12 105 1 1 1092 305 217 72 0 chr9 66474993 66475062 -57601110 - L1MC4 LINE L1 -19 8023 7950 1 1092 239 276 65 13 chr9 66475108 66475185 -57600987 - B1F SINE Alu -52 97 17 1 1092 927 194 32 21 chr9 66475439 66475629 -57600543 - B3 SINE B2 -1 215 24 1 1092 338 295 220 36 chr9 66475644 66475835 -57600337 - B4A SINE B4 -66 226 1 1 1092 998 273 86 31 chr9 66475844 66476264 -57599908 - L1MC4 LINE L1 -224 7818 7376 1 1092 275 159 0 22 chr9 66476343 66476388 -57599784 + B3 SINE B2 80 123 -93 1 1092 355 340 110 16 chr9 66476398 66476589 -57599583 - MIRb SINE MIR -19 249 41 1 1092 564 285 14 14 chr9 66476980 66477119 -57599053 - B1F2 SINE Alu -1 148 10 1 1092 296 344 65 83 chr9 66476984 66477152 -57599020 - B4 SINE B4 -69 223 59 1 1092 925 249 34 0 chr9 66477195 66477404 -57598768 - B3 SINE B2 0 216 1 1 1092 231 337 48 91 chr9 66477494 66477680 -57598492 - MLT1L LTR MaLR -425 185 8 1 1092 293 304 10 61 chr9 66478233 66478331 -57597841 - ID_B1 SINE B4 -116 108 16 1 1092 315 262 0 0 chr9 66478277 66478338 -57597834 - BC1_Mm scRNA scRNA -83 69 9 1 1092 253 277 112 30 chr9 66478345 66478479 -57597693 - B1F1 SINE Alu -4 145 1 1 1092 804 162 0 0 chr9 66479357 66479631 -57596541 + CT-rich Low_complexity Low_complexity 1 274 0 1 1092 757 207 171 11 chr9 66479657 66479833 -57596339 - ID_B1 SINE B4 -16 208 5 1 1092 41996 4 0 0 chr9 66480764 66487356 -57588816 - L1Md_A LINE L1 0 6582 16 1 1092 422 248 7 104 chr9 66488040 66488175 -57587997 + MT2B LTR ERVL 143 264 -337 1 1092 974 79 14 14 chr9 66488068 66488210 -57587962 + B1_Mm SINE Alu 6 147 0 1 1092 504 32 0 0 chr9 66488949 66489011 -57587161 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1092 807 254 96 3 chr9 66489014 66489219 -57586953 - ID_B1 SINE B4 -14 210 3 1 1092 488 175 12 0 chr9 66489474 66489554 -57586618 + PB1 SINE Alu 47 127 0 1 1092 598 225 108 7 chr9 66489842 66489981 -57586191 + B3A SINE B2 1 153 -45 1 1092 25 0 0 0 chr9 66490067 66490092 -57586080 + AT_rich Low_complexity Low_complexity 1 25 0 1 1092 760 230 96 24 chr9 66490146 66490355 -57585817 + ID_B1 SINE B4 1 224 0 1 1092 223 319 33 58 chr9 66490357 66490477 -57585695 + MIRc SINE MIR 147 263 -5 1 1092 894 162 0 0 chr9 66490735 66490914 -57585258 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1092 254 388 0 12 chr9 66490935 66491016 -57585156 - PB1D10 SINE Alu -35 82 3 1 1092 895 181 7 7 chr9 66491126 66491271 -57584901 - B1_Mur4 SINE Alu -4 146 2 1 1092 770 264 98 5 chr9 66491287 66491481 -57584691 - ID_B1 SINE B4 -10 214 3 1 1092 430 277 151 56 chr9 66491545 66491797 -57584375 - B4A SINE B4 -16 276 1 1 1092 425 19 19 0 chr9 66491885 66491939 -57584233 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1092 348 265 83 144 chr9 66491982 66492211 -57583961 - B4A SINE B4 -77 215 1 1 1092 250 237 25 50 chr9 66492288 66492368 -57583804 + RLTR25B LTR ERVK 420 497 -531 1 1092 633 108 9 56 chr9 66492315 66492423 -57583749 + B1_Mus2 SINE Alu 45 147 0 1 1092 531 326 78 25 chr9 66492606 66492927 -57583245 - L1M5 LINE L1 -588 5652 5315 1 1092 855 246 24 10 chr9 66492937 66493146 -57583026 - B3 SINE B2 -4 212 1 1 1092 351 212 0 0 chr9 66493181 66493247 -57582925 - PB1D10 SINE Alu -35 82 17 1 1092 279 316 53 0 chr9 66493249 66493325 -57582847 - RSINE1 SINE B4 -4 161 82 1 1092 1733 151 3 26 chr9 66493454 66493760 -57582412 + RMER6B LTR ERVK 162 460 -1 1 1092 221 271 22 66 chr9 66495285 66495376 -57580796 - MIR SINE MIR -71 137 51 1 1092 1634 256 92 7 chr9 66495687 66496152 -57580020 + L1MB7 LINE L1 5657 6161 -23 1 1092 183 285 158 59 chr9 66496289 66496449 -57579723 + MIRb SINE MIR 1 163 -45 1 1092 790 200 53 115 chr9 66496642 66496868 -57579304 - B4A SINE B4 -80 212 1 1 1092 759 236 35 0 chr9 66497162 66497306 -57578866 - RSINE1 SINE B4 -9 156 8 1 1092 1104 72 0 0 chr9 66497399 66497538 -57578634 + B1_Mm SINE Alu 9 147 0 1 1092 384 250 85 28 chr9 66498462 66498639 -57577533 + Lx9 LINE L1 4884 5070 -777 1 1092 1023 90 0 0 chr9 66498640 66498784 -57577388 + (GGAA)n Simple_repeat Simple_repeat 3 146 0 1 1092 509 130 150 135 chr9 66498794 66498927 -57577245 + B1_Mur4 SINE Alu 16 150 0 1 1092 1996 250 75 30 chr9 66498936 66499753 -57576419 + Lx9 LINE L1 5205 6111 -1362 1 1092 345 100 0 0 chr9 66499753 66499803 -57576369 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1092 804 313 112 53 chr9 66499803 66499992 -57576180 + Lx9 LINE L1 6112 6285 -1188 1 1092 2500 221 107 4 chr9 66500000 66500562 -57575610 + Lx9 LINE L1 6436 7055 -589 1 1092 342 214 99 22 chr9 66500661 66500752 -57575420 + MIRb SINE MIR 163 260 -8 2 1092 256 244 123 57 chr9 66501003 66501125 -57575047 - MER53 DNA hAT -21 172 43 3 1092 408 228 68 25 chr9 66501407 66501529 -57574643 - RSINE1 SINE B4 -33 132 1 4 1092 841 149 0 15 chr9 66501586 66501722 -57574450 + B1_Mus2 SINE Alu 4 137 -10 5 1092 912 207 28 60 chr9 66501744 66501960 -57574212 - B3 SINE B2 -6 210 2 6 1092 659 82 0 20 chr9 66502324 66502424 -57573748 + (TTTCC)n Simple_repeat Simple_repeat 3 100 0 7 1092 1048 116 0 26 chr9 66502439 66502590 -57573582 - B1_Mus1 SINE Alu 0 148 2 8 1092 24 53 0 0 chr9 66503101 66503139 -57573033 + AT_rich Low_complexity Low_complexity 1 38 0 9 1092 821 117 8 1 chr9 66503143 66503276 -57572896 - MTC LTR MaLR -286 133 1 1 1092 577 250 69 28 chr9 66503277 66503421 -57572751 + RSINE1 SINE B4 6 155 -10 1 1092 246 262 127 76 chr9 66503569 66503726 -57572446 - L1MC4 LINE L1 -128 7914 7750 1 1092 295 304 129 31 chr9 66503940 66504164 -57572008 - L1MC4 LINE L1 -428 7614 7369 1 1092 507 248 40 4 chr9 66504171 66504300 -57571872 - ID_B1 SINE B4 -157 135 2 1 1092 198 238 0 45 chr9 66505383 66505427 -57570745 - L2b LINE L2 -22 3353 3312 1 1092 351 330 0 0 chr9 66505482 66505597 -57570575 - PB1D10 SINE Alu -2 115 1 1 1092 225 0 0 0 chr9 66505736 66505761 -57570411 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1 1092 365 295 123 9 chr9 66505762 66505868 -57570304 - PB1 SINE Alu -8 119 2 1 1092 423 257 62 41 chr9 66505950 66506096 -57570076 - RSINE1 SINE B4 0 165 17 1 1092 628 215 21 36 chr9 66506064 66506204 -57569968 + B1_Mus1 SINE Alu 11 148 0 1 1092 306 226 173 19 chr9 66506915 66507019 -57569153 - PB1D9 SINE Alu 0 120 1 2 1092 530 214 29 0 chr9 66507019 66507064 -57569108 - ID SINE ID -142 82 35 2 1092 773 179 67 67 chr9 66507240 66507420 -57568752 + B3 SINE B2 2 181 -35 2 1092 180 111 0 0 chr9 66508582 66508609 -57567563 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1092 841 156 57 0 chr9 66508631 66508772 -57567400 + B1_Mur3 SINE Alu 1 149 0 2 1092 230 29 59 0 chr9 66508787 66508821 -57567351 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1092 679 275 0 0 chr9 66508821 66508952 -57567220 - B1_Mur1 SINE Alu -13 136 6 2 1092 237 286 78 26 chr9 66509094 66509209 -57566963 + MIRb SINE MIR 23 143 -125 2 1092 182 322 139 57 chr9 66509469 66509591 -57566581 + MIRb SINE MIR 126 257 -11 2 1092 653 280 40 67 chr9 66509853 66510152 -57566020 - B4A SINE B4 -1 291 1 2 1092 256 328 16 0 chr9 66510310 66510371 -57565801 - ID4_ SINE ID -20 63 2 2 1092 210 312 37 81 chr9 66511221 66511357 -57564815 + MIRm SINE MIR 55 184 -92 3 1092 186 43 0 0 chr9 66511480 66511503 -57564669 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 1092 534 31 0 0 chr9 66511608 66511672 -57564500 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 3 1092 189 0 0 0 chr9 66511850 66511871 -57564301 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1092 223 98 73 0 chr9 66511933 66511974 -57564198 + T-rich Low_complexity Low_complexity 1 44 0 3 1092 1048 136 14 0 chr9 66511974 66512121 -57564051 - B1_Mur2 SINE Alu 0 149 1 3 1092 892 229 37 5 chr9 66512467 66512656 -57563516 + B3 SINE B2 1 195 -21 3 1092 291 140 0 0 chr9 66512665 66512715 -57563457 + (ATG)n Simple_repeat Simple_repeat 3 52 0 3 1092 378 107 0 0 chr9 66512718 66512774 -57563398 + (CAT)n Simple_repeat Simple_repeat 3 58 0 3 1092 674 305 91 49 chr9 66512924 66513497 -57562675 + MER115 DNA Tip100 3 665 -28 3 1092 255 331 60 8 chr9 66514565 66514699 -57561473 - L2 LINE L2 -434 2985 2845 4 1092 354 45 0 0 chr9 66514758 66514802 -57561370 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1092 263 187 107 0 chr9 66514868 66514943 -57561229 + Charlie4a DNA MER1_type 91 173 -335 4 1092 478 336 21 0 chr9 66514931 66515071 -57561101 + MTD LTR MaLR 24 166 -253 4 1092 611 324 51 16 chr9 66515078 66515332 -57560840 + Charlie4a DNA MER1_type 195 457 -51 4 1092 215 362 50 105 chr9 66515391 66515771 -57560401 - L2 LINE L2 -766 2653 2295 4 1092 238 239 83 14 chr9 66516278 66516350 -57559822 + MIR3 SINE MIR 114 190 -18 4 1092 662 254 8 0 chr9 66516433 66516567 -57559605 + RSINE1 SINE B4 2 136 -29 4 1092 513 0 0 0 chr9 66517265 66517322 -57558850 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1092 773 176 21 29 chr9 66517322 66517462 -57558710 - B1_Mur2 SINE Alu -10 139 1 4 1092 254 328 113 39 chr9 66517618 66517821 -57558351 - MIRb SINE MIR -22 246 29 4 1092 349 316 120 10 chr9 66518037 66518245 -57557927 + L1ME4a LINE L1 5596 5826 -298 4 1092 560 226 78 0 chr9 66518350 66518465 -57557707 + B3 SINE B2 63 186 -30 5 1092 351 0 0 0 chr9 66518465 66518504 -57557668 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1092 269 26 0 26 chr9 66518584 66518623 -57557549 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1092 1159 65 0 0 chr9 66518623 66518762 -57557410 - B1_Mus1 SINE Alu -8 140 2 5 1092 308 267 0 0 chr9 66518774 66518834 -57557338 - PB1D7 SINE Alu -5 115 56 5 1092 364 244 134 47 chr9 66518991 66519163 -57557009 + LTR16C LTR ERVL 186 372 -117 5 1092 233 241 56 0 chr9 66519561 66519615 -57556557 + LTR16C LTR ERVL 433 489 0 5 1092 247 258 70 76 chr9 66519768 66519940 -57556232 + RLTR21 LTR ERVK 1084 1254 -318 5 1092 1040 258 46 21 chr9 66519945 66520230 -57555942 - B4A SINE B4 0 292 1 5 1092 242 357 20 0 chr9 66520242 66520340 -57555832 - L1M5 LINE L1 -581 5659 5560 5 1092 394 315 31 0 chr9 66520563 66520690 -57555482 + MLT1D LTR MaLR 39 169 -336 5 1092 617 204 43 19 chr9 66520650 66520803 -57555369 - B3A SINE B2 -54 141 1 6 1092 281 315 65 94 chr9 66520804 66521081 -57555091 + LTR85a LTR Gypsy? 108 376 -326 6 1092 837 197 5 81 chr9 66521168 66521378 -57554794 + B3A SINE B2 5 198 0 6 1092 351 0 0 0 chr9 66521494 66521533 -57554639 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1092 374 0 22 0 chr9 66521533 66521578 -57554594 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1092 195 327 146 0 chr9 66521592 66521702 -57554470 + L2c LINE L2 3256 3381 -6 6 1092 293 236 13 40 chr9 66521980 66522055 -57554117 - B4 SINE B4 -218 74 2 6 1092 648 140 28 28 chr9 66522702 66522878 -57553294 + CT-rich Low_complexity Low_complexity 3 178 0 6 1092 729 178 8 23 chr9 66522911 66523043 -57553129 - B1_Mur2 SINE Alu -19 130 1 6 1092 1192 298 176 26 chr9 66523383 66524692 -57551480 + L1MEc LINE L1 31 1536 -4864 6 1092 257 282 11 23 chr9 66524692 66524779 -57551393 + CT-rich Low_complexity Low_complexity 1 86 0 7 1092 572 275 0 30 chr9 66524780 66524915 -57551257 - ID_B1 SINE B4 -2 222 92 7 1092 2073 202 35 13 chr9 66524960 66525356 -57550816 - MTD LTR MaLR -14 405 1 7 1092 461 213 0 11 chr9 66525470 66525565 -57550607 + Lx7 LINE L1 6690 6783 -913 7 1092 2444 139 13 5 chr9 66525577 66525960 -57550212 - ORR1B1 LTR MaLR -8 386 1 7 1092 965 311 126 20 chr9 66525960 66526457 -57549715 + Lx7 LINE L1 6793 7333 -140 7 1092 294 95 0 0 chr9 66526457 66526499 -57549673 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1092 864 311 126 20 chr9 66526499 66526557 -57549615 + Lx7 LINE L1 7334 7417 -56 7 1092 1080 256 20 38 chr9 66526635 66526927 -57549245 + B4A SINE B4 1 287 -5 7 1092 536 343 30 17 chr9 66527022 66527259 -57548913 + L1MEc LINE L1 2522 2761 -3558 6 1092 247 284 40 26 chr9 66528018 66528094 -57548078 - RMER15 LTR ERVL -58 517 441 7 1092 571 307 36 15 chr9 66528691 66528886 -57547286 + MIRb SINE MIR 1 199 -69 7 1092 491 195 0 0 chr9 66528959 66529046 -57547126 + RLTR18B LTR ERVK 1 87 -425 7 1092 881 176 0 7 chr9 66529811 66529960 -57546212 + B1_Mur3 SINE Alu 2 149 0 8 1092 226 261 132 33 chr9 66530013 66530104 -57546068 + PB1D10 SINE Alu 2 101 -16 8 1092 198 0 0 0 chr9 66530114 66530136 -57546036 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1092 464 160 0 10 chr9 66530475 66530576 -57545596 + GA-rich Low_complexity Low_complexity 3 102 0 8 1092 1429 207 77 28 chr9 66530588 66530941 -57545231 + ORR1D2 LTR MaLR 1 370 0 8 1092 369 255 110 20 chr9 66531145 66531245 -57544927 - RSINE1 SINE B4 -55 110 2 8 1092 807 178 0 0 chr9 66531278 66531407 -57544765 + B1_Mur2 SINE Alu 7 135 -14 8 1092 198 0 0 0 chr9 66531407 66531429 -57544743 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 8 1092 1262 160 128 0 chr9 66531666 66531916 -57544256 - ORR1D1 LTR MaLR -74 300 19 8 1092 721 215 323 5 chr9 66532152 66532372 -57543800 + B4 SINE B4 3 292 0 8 1092 198 103 0 0 chr9 66532929 66532958 -57543214 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1092 315 0 0 0 chr9 66534423 66534458 -57541714 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1092 1065 282 25 18 chr9 66534468 66534750 -57541422 - B4 SINE B4 -2 290 7 9 1092 821 309 74 9 chr9 66534996 66535433 -57540739 + MLT2B1 LTR ERVL 5 567 0 9 1092 196 257 12 146 chr9 66535961 66536043 -57540129 + L2c LINE L2 3275 3345 -42 9 1092 198 0 0 0 chr9 66536360 66536382 -57539790 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 9 1092 316 321 36 47 chr9 66536791 66536966 -57539206 - MIR SINE MIR -51 211 49 9 1092 198 71 0 0 chr9 66537450 66537478 -57538694 + (CCA)n Simple_repeat Simple_repeat 1 28 0 9 1092 2654 184 47 4 chr9 66537480 66537967 -57538205 - RMER5 LTR ERV1 -5 529 22 9 1092 273 278 219 62 chr9 66538003 66538075 -57538097 + MLT1A1 LTR MaLR 178 249 -159 9 1092 3404 43 0 2 chr9 66538075 66538472 -57537700 - MTA_Mm LTR MaLR 0 396 1 1 1092 273 278 219 62 chr9 66538472 66538591 -57537581 + MLT1A1 LTR MaLR 250 399 -9 9 1092 4480 199 45 29 chr9 66538684 66539788 -57536384 - RMER1A Other Other -13 1017 23 1 1092 299 147 42 0 chr9 66539790 66539852 -57536320 - ORR1C2 LTR MaLR -302 72 1 1 1092 481 302 59 26 chr9 66540307 66540460 -57535712 - RSINE1 SINE B4 0 165 8 1 1092 21 57 0 0 chr9 66540532 66540567 -57535605 + AT_rich Low_complexity Low_complexity 1 35 0 1 1092 189 0 0 0 chr9 66540594 66540615 -57535557 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1092 256 342 26 0 chr9 66540620 66540696 -57535476 + MLT1H LTR MaLR 78 155 -394 1 1092 412 243 27 0 chr9 66541546 66541715 -57534457 + ID_B1 SINE B4 2 202 -22 1 1092 240 179 103 35 chr9 66541847 66541905 -57534267 + tRNA-Met_ tRNA tRNA 1 62 -14 1 1092 694 262 16 107 chr9 66541932 66541990 -57534182 - MER33 DNA MER1_type -32 292 236 1 1092 398 209 133 0 chr9 66541990 66542095 -57534077 - PB1D7 SINE Alu -1 119 1 1 1092 694 261 24 95 chr9 66542095 66542386 -57533786 - MER33 DNA MER1_type -89 235 13 1 1092 573 55 0 0 chr9 66543165 66543238 -57532934 + (TTCCC)n Simple_repeat Simple_repeat 4 76 0 1 1092 644 177 94 24 chr9 66543245 66543372 -57532800 - B1_Mur3 SINE Alu -11 138 3 1 1092 276 264 86 21 chr9 66543720 66543813 -57532359 + PB1 SINE Alu 23 121 -6 1 1092 279 54 0 0 chr9 66543815 66543852 -57532320 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 1092 27 0 0 0 chr9 66543960 66543987 -57532185 + AT_rich Low_complexity Low_complexity 1 27 0 1 1092 765 167 34 27 chr9 66544003 66544151 -57532021 + B2_Mm2 SINE B2 2 150 -45 1 1092 198 0 0 0 chr9 66544158 66544180 -57531992 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 1092 266 341 7 52 chr9 66544825 66544961 -57531211 + MER3 DNA MER1_type 80 209 0 1 1092 279 0 0 0 chr9 66545042 66545073 -57531099 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1092 208 146 195 0 chr9 66545597 66545638 -57530534 - L2a LINE L2 -3 3423 3375 1 1092 219 333 46 28 chr9 66545647 66545755 -57530417 - MER91C DNA Tip100 -14 126 17 1 1092 195 186 0 0 chr9 66545800 66545843 -57530329 + CT-rich Low_complexity Low_complexity 1 43 0 1 1092 489 246 51 11 chr9 66545866 66546004 -57530168 - ID_B1 SINE B4 -150 142 3 1 1092 252 0 0 0 chr9 66546238 66546266 -57529906 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1092 2377 198 22 43 chr9 66546273 66546807 -57529365 - RMER5 LTR ERV1 -11 523 1 1 1092 247 295 0 0 chr9 66546987 66547048 -57529124 - MLT1H LTR MaLR -6 543 483 1 1092 649 248 52 0 chr9 66547291 66547444 -57528728 + RSINE1 SINE B4 3 163 -2 1 1092 256 363 41 51 chr9 66547920 66548066 -57528106 - L2c LINE L2 -12 3375 3206 1 1092 913 177 0 7 chr9 66548154 66548302 -57527870 + B1_Mur1 SINE Alu 2 148 -1 1 1092 828 258 14 23 chr9 66548322 66548540 -57527632 + B3 SINE B2 1 216 0 1 1092 2321 140 57 30 chr9 66548570 66549011 -57527161 - RLTR11B LTR ERVK 0 453 1 1 1092 302 286 30 20 chr9 66549126 66549226 -57526946 + L1MD LINE L1 4109 4209 -1937 1 1092 241 189 18 70 chr9 66549256 66549313 -57526859 - RMER10A LTR ERVL -388 54 1 1 1092 1205 260 199 42 chr9 66549410 66549882 -57526290 + Lx9 LINE L1 6973 7516 -128 1 1092 384 22 0 0 chr9 66549882 66549927 -57526245 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1092 1205 260 199 42 chr9 66549927 66550028 -57526144 + Lx9 LINE L1 7517 7636 -8 1 1092 400 192 27 0 chr9 66550158 66550231 -57525941 + B1_Mus1 SINE Alu 2 76 -72 1 1092 294 274 0 67 chr9 66550231 66550244 -57525928 + B4A SINE B4 87 166 -126 1 1092 470 200 11 11 chr9 66550447 66550559 -57525613 + B1_Mus2 SINE Alu 9 147 0 1 1092 402 21 0 0 chr9 66550661 66550708 -57525464 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1092 706 239 131 61 chr9 66551150 66551336 -57524836 + RMER1C Other Other 22 228 -1114 1 1092 2350 75 15 53 chr9 66551336 66551675 -57524497 - ORR1A3 LTR MaLR 0 326 1 1 1092 706 239 131 61 chr9 66551675 66551702 -57524470 + RMER1C Other Other 229 250 -1092 1 1092 238 195 24 0 chr9 66551773 66551814 -57524358 + RMER1C Other Other 255 296 -1046 1 1092 1819 263 34 110 chr9 66552057 66552745 -57523427 + RMER1C Other Other 375 961 -381 1 1092 321 26 0 0 chr9 66552980 66553018 -57523154 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1092 801 21 0 0 chr9 66553065 66553160 -57523012 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 1 1092 437 218 46 0 chr9 66553160 66553247 -57522925 - B1_Mur1 SINE Alu -24 125 35 1 1092 785 202 27 55 chr9 66553250 66553433 -57522739 - B3A SINE B2 0 198 21 1 1092 222 369 96 10 chr9 66553919 66554023 -57522149 + PB1D10 SINE Alu 3 115 -2 1 1092 567 305 0 0 chr9 66554545 66554686 -57521486 - ID_B1 SINE B4 0 224 84 1 1092 335 321 0 9 chr9 66555733 66555846 -57520326 - PB1D10 SINE Alu 0 117 6 1 1092 275 319 70 17 chr9 66555759 66555874 -57520298 - ID_B1 SINE B4 -52 172 52 1 1092 492 68 0 0 chr9 66556561 66556634 -57519538 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 1 1092 301 298 157 7 chr9 66556660 66556847 -57519325 - MIRc SINE MIR -39 229 15 1 1092 285 284 269 0 chr9 66557722 66557856 -57518316 + B3 SINE B2 1 170 -46 1 1092 1139 65 0 0 chr9 66558189 66558327 -57517845 + B1_Mus1 SINE Alu 1 138 -10 1 1092 216 0 0 0 chr9 66558327 66558351 -57517821 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1092 942 126 12 6 chr9 66558951 66559119 -57517053 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 1 1092 802 237 0 0 chr9 66559119 66559254 -57516918 - B1_Mur1 SINE Alu -13 136 2 1 1092 950 145 0 6 chr9 66559271 66559438 -57516734 + CT-rich Low_complexity Low_complexity 1 166 0 1 1092 487 295 7 54 chr9 66559457 66559604 -57516568 - RSINE1 SINE B4 -15 150 11 1 1092 351 221 8 18 chr9 66559617 66559733 -57516439 - PB1D7 SINE Alu -34 113 1 1 1092 190 226 30 61 chr9 66560011 66560077 -57516095 + MIR SINE MIR 87 150 -58 1 1092 315 0 0 0 chr9 66561759 66561794 -57514378 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1092 344 329 65 20 chr9 66563803 66564051 -57512121 + HAL1 LINE L1 2244 2502 -5 1 1092 324 222 0 14 chr9 66564640 66564713 -57511459 + L1MC4a LINE L1 5830 5901 -1981 1 1092 894 134 6 12 chr9 66564824 66564990 -57511182 + GA-rich Low_complexity Low_complexity 1 165 0 1 1092 207 69 0 0 chr9 66565009 66565038 -57511134 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1092 188 163 22 65 chr9 66565486 66565532 -57510640 + MIR SINE MIR 109 152 -56 1 1092 234 287 0 159 chr9 66565539 66565684 -57510488 - MER5A1 DNA MER1_type 0 166 45 1 1092 456 51 0 0 chr9 66565734 66565793 -57510379 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1092 1275 152 13 63 chr9 66567668 66567906 -57508266 + URR1A DNA MER1_type 1 226 0 1 1092 752 244 61 23 chr9 66568338 66568552 -57507620 - ID_B1 SINE B4 -1 223 2 1 1092 357 293 81 19 chr9 66569198 66569358 -57506814 + L1ME3A LINE L1 5994 6163 -10 1 1092 683 237 0 7 chr9 66569451 66569591 -57506581 + RSINE1 SINE B4 3 141 -24 1 1092 396 0 0 0 chr9 66569607 66569651 -57506521 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1092 883 256 119 11 chr9 66570143 66570404 -57505768 + B4 SINE B4 2 290 -2 1 1092 612 268 74 17 chr9 66571386 66571561 -57504611 + MER5A DNA MER1_type 3 187 -2 1 1092 441 0 0 0 chr9 66572143 66572192 -57503980 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1092 380 312 8 43 chr9 66572261 66572378 -57503794 - PB1D9 SINE Alu -6 114 2 1 1092 328 252 151 20 chr9 66572459 66572605 -57503567 - ORR1E LTR MaLR -99 260 96 1 1092 219 286 120 11 chr9 66573029 66573121 -57503051 - PB1D10 SINE Alu -5 112 11 1 1092 223 235 39 19 chr9 66573963 66574015 -57502157 + L4 LINE RTE 1766 1818 -211 1 1092 207 0 0 0 chr9 66574038 66574061 -57502111 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1 1092 848 228 156 0 chr9 66574061 66574241 -57501931 - ID_B1 SINE B4 -13 211 4 1 1092 1226 158 32 23 chr9 66574528 66574748 -57501424 - URR1A DNA MER1_type -4 222 1 1 1092 190 362 96 0 chr9 66576217 66576311 -57499861 + MIRb SINE MIR 83 185 -83 1 1092 402 21 0 0 chr9 66577055 66577102 -57499070 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1092 222 37 0 0 chr9 66577231 66577258 -57498914 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1092 788 284 26 5 chr9 66577263 66577454 -57498718 - ID_B1 SINE B4 -27 197 3 1 1092 1252 178 222 94 chr9 66577710 66577768 -57498404 - MTC LTR MaLR 0 421 372 1 1092 1734 21 0 0 chr9 66577768 66577961 -57498211 + B2_Mm1a SINE B2 1 193 0 1 1092 1252 178 222 94 chr9 66577961 66578275 -57497897 - MTC LTR MaLR -50 371 1 1 1092 221 330 54 11 chr9 66578276 66578368 -57497804 + MIR SINE MIR 96 191 -71 1 1092 508 351 27 5 chr9 66578381 66578567 -57497605 + MER58A DNA MER1_type 34 223 -1 1 1092 256 292 31 0 chr9 66578664 66578729 -57497443 + RSINE1 SINE B4 87 153 -12 1 1092 339 154 21 32 chr9 66578743 66578837 -57497335 + CT-rich Low_complexity Low_complexity 5 97 0 1 1092 721 289 64 0 chr9 66579143 66579347 -57496825 - MER20 DNA MER1_type 0 219 3 1 1092 217 225 0 0 chr9 66579594 66579634 -57496538 + polypyrimidine Low_complexity Low_complexity 4 43 0 1 1092 405 0 0 0 chr9 66579717 66579762 -57496410 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1092 255 310 0 0 chr9 66579771 66579829 -57496343 - B4A SINE B4 -8 284 227 1 1092 860 301 41 51 chr9 66579829 66580123 -57496049 - B4A SINE B4 0 292 2 1 1092 484 230 10 43 chr9 66580730 66580850 -57495322 + PB1D10 SINE Alu 13 126 -22 2 1092 659 263 65 8 chr9 66581614 66581859 -57494313 + L1MB5 LINE L1 5751 6009 -165 2 1092 673 284 35 0 chr9 66581871 66582040 -57494132 + ID_B1 SINE B4 21 195 -29 2 1092 817 186 0 0 chr9 66582110 66582239 -57493933 - B3 SINE B2 -86 130 2 2 1092 407 164 15 15 chr9 66582239 66582307 -57493865 + ID_B1 SINE B4 149 216 -8 2 1092 227 261 116 9 chr9 66582440 66582552 -57493620 + MER5B DNA MER1_type 49 172 -6 2 1092 210 306 33 100 chr9 66582566 66582686 -57493486 + MER5A DNA MER1_type 1 112 -77 2 1092 458 228 39 17 chr9 66582830 66582990 -57493182 - L1_Mm LINE L1 -50 5833 5669 2 1092 376 298 43 17 chr9 66583268 66583384 -57492788 - MER5A DNA MER1_type -7 182 64 2 1092 819 251 30 0 chr9 66583406 66583573 -57492599 - ID_B1 SINE B4 -48 176 5 2 1092 219 204 0 0 chr9 66583614 66583663 -57492509 + (ATG)n Simple_repeat Simple_repeat 1 49 0 2 1093 191 352 46 37 chr9 66585309 66585418 -57490754 + L2b LINE L2 3216 3325 -50 2 1093 1091 268 24 17 chr9 66585538 66585827 -57490345 - B4 SINE B4 -1 291 1 2 1093 359 214 10 101 chr9 66586115 66586214 -57489958 + B3A SINE B2 106 195 -3 2 1093 1218 48 7 0 chr9 66586751 66586897 -57489275 + B1_Mus2 SINE Alu 1 147 0 2 1093 377 287 39 83 chr9 66586930 66587086 -57489086 + B1F1 SINE Alu 1 149 0 2 1093 333 0 0 0 chr9 66587134 66587171 -57489001 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 2 1093 309 222 12 36 chr9 66588997 66589081 -57487091 + ID4_ SINE ID 1 82 -1 2 1093 613 274 12 25 chr9 66589133 66589294 -57486878 + RSINE1 SINE B4 2 160 -5 2 1093 495 194 20 30 chr9 66589406 66589507 -57486665 - RSINE1 SINE B4 -63 102 3 2 1093 299 233 51 82 chr9 66589539 66589637 -57486535 + RSINE1 SINE B4 66 160 -5 2 1093 480 204 20 30 chr9 66589751 66589852 -57486320 - RSINE1 SINE B4 -63 102 3 2 1093 421 295 142 34 chr9 66590307 66590602 -57485570 + L1MC5 LINE L1 7587 7913 -48 2 1093 505 192 314 29 chr9 66590960 66591132 -57485040 + ID_B1 SINE B4 4 224 0 2 1093 216 0 0 0 chr9 66591382 66591406 -57484766 + (TGG)n Simple_repeat Simple_repeat 3 26 0 2 1093 664 225 8 0 chr9 66591590 66591710 -57484462 - ID_B1 SINE B4 0 224 104 2 1093 604 249 11 85 chr9 66591711 66591887 -57484285 + B4A SINE B4 2 164 -128 2 1093 233 293 0 0 chr9 66591897 66591955 -57484217 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1093 205 312 101 48 chr9 66592661 66592829 -57483343 - MIR3 SINE MIR -16 192 16 2 1093 1214 125 124 10 chr9 66593102 66593304 -57482868 - URR1B DNA MER1_type 0 225 1 2 1093 600 238 13 40 chr9 66594732 66594750 -57481422 - MT2A LTR ERVL -388 145 129 2 1093 486 0 0 0 chr9 66594750 66594804 -57481368 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1093 600 238 13 40 chr9 66594804 66594934 -57481238 - MT2A LTR ERVL -405 128 1 2 1093 829 239 5 32 chr9 66596549 66596718 -57479454 + B3A SINE B2 1 165 -33 2 1093 402 39 0 0 chr9 66596718 66596770 -57479402 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 2 1093 829 239 5 32 chr9 66596770 66596786 -57479386 + B3A SINE B2 166 181 -17 2 1093 220 211 0 0 chr9 66596793 66596831 -57479341 - PB1D9 SINE Alu -9 111 74 2 1093 396 324 10 0 chr9 66597281 66597383 -57478789 + PB1D10 SINE Alu 1 103 -14 2 1093 696 204 68 25 chr9 66597389 66597550 -57478622 + B3 SINE B2 43 210 -6 2 1093 950 154 0 0 chr9 66597954 66598097 -57478075 + B1_Mur4 SINE Alu 2 144 -6 2 1093 307 55 18 18 chr9 66598293 66598348 -57477824 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 2 1093 387 277 0 11 chr9 66599237 66599332 -57476840 + PB1D10 SINE Alu 17 110 -7 2 1093 188 315 0 40 chr9 66599364 66599440 -57476732 - L3 LINE CR1 -3188 1301 1229 2 1093 405 0 0 0 chr9 66601022 66601067 -57475105 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1093 198 0 0 0 chr9 66602186 66602208 -57473964 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1093 421 273 20 34 chr9 66603079 66603227 -57472945 - B1F SINE Alu -1 148 3 2 1093 414 0 0 0 chr9 66604352 66604398 -57471774 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1093 581 252 66 47 chr9 66604540 66604752 -57471420 - MER20 DNA MER1_type -2 217 2 2 1093 910 201 71 20 chr9 66604865 66605063 -57471109 - B3 SINE B2 0 216 9 2 1093 323 264 7 156 chr9 66610663 66610819 -57465353 + MER5A DNA MER1_type 2 134 -32 2 1093 236 205 0 0 chr9 66611368 66611407 -57464765 + MIR SINE MIR 63 101 -161 2 1093 1197 54 7 0 chr9 66611693 66611840 -57464332 + B1_Mus1 SINE Alu 1 148 0 2 1093 282 167 0 0 chr9 66611843 66611903 -57464269 + A-rich Low_complexity Low_complexity 1 60 0 2 1093 311 256 156 0 chr9 66614972 66615062 -57461110 + B3A SINE B2 30 133 -65 2 1093 189 0 0 0 chr9 66615726 66615747 -57460425 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1093 978 79 7 0 chr9 66615747 66615886 -57460286 - B1_Mus1 SINE Alu 0 148 9 2 1093 215 281 0 15 chr9 66615991 66616056 -57460116 + PB1D10 SINE Alu 54 117 0 2 1093 687 142 30 0 chr9 66616210 66616344 -57459828 + URR1B DNA MER1_type 86 223 -2 2 1093 238 259 185 22 chr9 66616347 66616525 -57459647 - MER33 DNA MER1_type -44 280 74 2 1093 213 267 0 0 chr9 66616847 66616892 -57459280 + polypyrimidine Low_complexity Low_complexity 4 48 0 2 1093 204 135 0 0 chr9 66617600 66617637 -57458535 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1093 459 102 22 11 chr9 66617669 66617758 -57458414 + (TATG)n Simple_repeat Simple_repeat 3 92 0 2 1093 466 292 15 8 chr9 66617776 66617907 -57458265 - RSINE1 SINE B4 -22 143 12 2 1093 243 174 54 68 chr9 66618256 66618330 -57457842 + L1MB8 LINE L1 5913 5985 -193 2 1093 287 283 169 28 chr9 66619184 66619362 -57456810 + L1ME3 LINE L1 5746 5948 -214 2 1093 589 215 43 36 chr9 66619419 66619559 -57456613 - RSINE1 SINE B4 -23 142 2 2 1093 181 326 0 0 chr9 66619831 66619880 -57456292 - L2c LINE L2 -227 3160 3112 2 1093 852 258 45 23 chr9 66620008 66620274 -57455898 - L1M2 LINE L1 -1136 5007 4736 2 1093 478 32 32 0 chr9 66620272 66620334 -57455838 + L1_Mur2 LINE L1 5349 5412 -465 2 1093 235 288 14 14 chr9 66620352 66620426 -57455746 - L1MD LINE L1 -2014 4132 4059 2 1093 796 138 353 0 chr9 66620564 66620731 -57455441 + URR1A DNA MER1_type 1 226 0 2 1093 555 302 53 26 chr9 66621056 66621284 -57454888 + B4A SINE B4 3 236 -56 2 1093 926 237 19 5 chr9 66621480 66621692 -57454480 - B3 SINE B2 0 216 2 2 1093 636 294 28 22 chr9 66621821 66622002 -57454170 - B3A SINE B2 -16 182 1 2 1093 192 318 56 22 chr9 66622360 66622450 -57453722 + L2 LINE L2 1923 2015 -1404 2 1093 269 0 56 0 chr9 66622551 66622587 -57453585 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 2 1093 278 234 202 0 chr9 66622782 66622876 -57453296 - PB1D7 SINE Alu -7 113 1 2 1093 698 259 24 0 chr9 66625029 66625195 -57450977 - B3A SINE B2 -26 172 3 2 1093 197 186 131 33 chr9 66626782 66626843 -57449329 + MER5B DNA MER1_type 98 164 -14 2 1093 376 180 0 0 chr9 66627649 66627710 -57448462 + ID4_ SINE ID 14 74 -9 2 1093 212 321 23 35 chr9 66627710 66627728 -57448444 + RSINE1 SINE B4 30 92 -73 2 1093 431 301 42 0 chr9 66628741 66628884 -57447288 + B1F SINE Alu 1 149 0 2 1093 334 360 107 31 chr9 66628993 66629375 -57446797 + L1M5 LINE L1 5324 5734 -439 2 1093 422 286 136 15 chr9 66629375 66629465 -57446707 + B4A SINE B4 2 111 -181 2 1093 506 222 37 0 chr9 66629465 66629573 -57446599 + PB1D9 SINE Alu 4 115 -5 2 1093 422 286 136 15 chr9 66629573 66629688 -57446484 + B4A SINE B4 112 232 -60 2 1093 392 158 13 0 chr9 66629688 66629764 -57446408 + A-rich Low_complexity Low_complexity 3 79 0 2 1093 316 308 0 13 chr9 66629765 66629844 -57446328 + G-rich Low_complexity Low_complexity 2 79 0 2 1093 373 261 22 22 chr9 66629847 66630027 -57446145 + GA-rich Low_complexity Low_complexity 1 180 0 2 1093 228 32 0 31 chr9 66630027 66630059 -57446113 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 2 1093 243 0 0 0 chr9 66630089 66630116 -57446056 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1093 191 346 29 14 chr9 66630487 66630625 -57445547 + L2 LINE L2 2118 2257 -1162 2 1093 427 283 89 16 chr9 66630764 66630954 -57445218 + L2 LINE L2 2476 2679 -740 2 1093 222 184 20 0 chr9 66631095 66631144 -57445028 - PB1D7 SINE Alu 0 120 71 2 1093 180 0 0 0 chr9 66631368 66631388 -57444784 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2 1093 475 325 12 25 chr9 66631389 66631550 -57444622 - RSINE1 SINE B4 -4 161 3 2 1093 838 261 34 5 chr9 66632785 66632989 -57443183 - B3 SINE B2 -6 210 1 2 1093 28 29 0 0 chr9 66633105 66633140 -57443032 + AT_rich Low_complexity Low_complexity 1 35 0 2 1093 369 277 62 12 chr9 66633462 66633623 -57442549 + MER5A DNA MER1_type 17 185 -4 2 1093 231 297 61 35 chr9 66634614 66634631 -57441541 + B1F SINE Alu 32 149 0 2 1093 423 245 41 0 chr9 66634631 66634729 -57441443 + ID_B1 SINE B4 123 224 0 2 1093 207 139 0 0 chr9 66634797 66634833 -57441339 + (TATG)n Simple_repeat Simple_repeat 4 39 0 2 1093 365 338 88 0 chr9 66634934 66635082 -57441090 + RSINE1 SINE B4 1 161 -4 2 1093 272 255 58 36 chr9 66635180 66635264 -57440908 - PB1D7 SINE Alu -17 100 4 2 1093 625 11 11 11 chr9 66636889 66636980 -57439192 + L1Md_F2 LINE L1 6477 6567 -15 3 1093 345 47 0 0 chr9 66637013 66637056 -57439116 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1093 741 146 103 7 chr9 66637166 66637311 -57438861 + B2_Mm2 SINE B2 19 177 -18 3 1093 186 43 0 0 chr9 66637311 66637334 -57438838 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 3 1093 572 137 10 0 chr9 66637981 66638083 -57438089 + (TG)n Simple_repeat Simple_repeat 2 104 0 3 1093 500 200 200 57 chr9 66638186 66638361 -57437811 - B3 SINE B2 -13 203 4 3 1093 432 0 0 0 chr9 66638646 66638694 -57437478 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1093 737 222 0 14 chr9 66638694 66638833 -57437339 - B1_Mur2 SINE Alu -7 142 4 3 1093 215 347 28 0 chr9 66639174 66639186 -57436986 - ID4_ SINE ID 0 83 10 3 1093 225 283 33 0 chr9 66639186 66639246 -57436926 - tRNA-Ala-GCA tRNA tRNA -10 65 4 3 1093 28 29 0 0 chr9 66639362 66639397 -57436775 + AT_rich Low_complexity Low_complexity 1 35 0 3 1093 540 291 0 0 chr9 66640025 66640166 -57436006 + ID_B1 SINE B4 84 224 0 3 1093 398 250 135 0 chr9 66640325 66640421 -57435751 + B1_Mur1 SINE Alu 1 109 -40 3 1093 545 28 14 0 chr9 66640422 66640493 -57435679 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 3 1093 261 338 66 7 chr9 66641583 66641735 -57434437 + L2a LINE L2 3265 3425 -1 3 1093 1391 261 77 84 chr9 66644629 66645078 -57431094 - Lx8 LINE L1 -7 7466 7018 3 1093 1251 102 57 0 chr9 66645078 66645255 -57430917 - B2_Mm2 SINE B2 -7 188 2 3 1093 1391 261 77 84 chr9 66645255 66645390 -57430782 - Lx8 LINE L1 -456 7017 6886 3 1093 631 104 128 14 chr9 66645442 66645562 -57430610 - RLTR20A1 LTR ERVK -415 126 1 3 1093 228 241 0 0 chr9 66647151 66647209 -57428963 - B3 SINE B2 -158 58 1 3 1093 1116 51 36 0 chr9 66647660 66647797 -57428375 + B1_Mus1 SINE Alu 1 142 -6 3 1093 234 0 0 0 chr9 66647800 66647826 -57428346 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1093 532 81 0 0 chr9 66647909 66647983 -57428189 + BC1_Mm scRNA scRNA 3 76 -76 3 1093 234 0 0 0 chr9 66647989 66648015 -57428157 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1093 261 0 0 0 chr9 66648881 66648910 -57427262 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 3 1093 606 108 225 0 chr9 66651392 66651512 -57424660 - B1_Mus1 SINE Alu 0 148 2 3 1093 233 258 80 30 chr9 66651632 66651732 -57424440 + L1M4b LINE L1 2988 3092 -3914 3 1093 813 250 89 4 chr9 66651753 66652010 -57424162 - MT2A LTR ERVL -12 521 243 3 1093 363 256 29 140 chr9 66652007 66652143 -57424029 - MTE2a LTR MaLR -230 149 29 3 1093 1447 156 80 52 chr9 66652143 66652529 -57423643 + RMER17C LTR ERVK 1 397 -13 3 1093 226 280 0 0 chr9 66654127 66654177 -57421995 - ID4_ SINE ID 0 83 34 3 1093 241 314 10 0 chr9 66654192 66654294 -57421878 + L1M4b LINE L1 3519 3621 -3713 3 1093 1807 169 60 8 chr9 66654340 66654693 -57421479 + RLTR14 LTR ERV1 10 380 -2 3 1093 4069 199 109 48 chr9 66654775 66655283 -57420889 - RMER12 LTR ERVK -154 1168 768 3 1093 180 0 0 0 chr9 66655283 66655303 -57420869 + (TGGA)n Simple_repeat Simple_repeat 3 22 0 3 1093 4069 196 101 29 chr9 66655303 66656042 -57420130 - RMER12 LTR ERVK -555 767 1 3 1093 288 219 32 16 chr9 66656046 66656136 -57420036 + B4A SINE B4 1 96 -196 3 1093 248 260 0 99 chr9 66656217 66656298 -57419874 + RSINE1 SINE B4 93 165 0 3 1093 313 251 71 52 chr9 66656298 66656508 -57419664 + L1M4 LINE L1 2397 2610 -3536 3 1093 847 123 92 0 chr9 66656590 66656720 -57419452 + B1_Mus2 SINE Alu 1 142 -5 3 1093 1267 131 10 5 chr9 66656729 66656921 -57419251 + B2_Mm1t SINE B2 1 193 0 3 1093 278 155 0 33 chr9 66656922 66656982 -57419190 + GA-rich Low_complexity Low_complexity 3 60 0 3 1093 332 293 66 37 chr9 66656989 66657230 -57418942 + L1M4 LINE L1 2720 2967 -3179 3 1093 729 264 109 31 chr9 66657509 66657829 -57418343 - L1MA7 LINE L1 -171 6120 5776 3 1093 209 310 0 53 chr9 66657969 66658044 -57418128 - L2a LINE L2 -11 3415 3345 3 1093 306 257 123 0 chr9 66658095 66658192 -57417980 + B1_Mur1 SINE Alu 36 141 -6 3 1093 247 208 0 19 chr9 66658192 66658246 -57417926 + GA-rich Low_complexity Low_complexity 1 53 0 3 1093 1161 58 0 0 chr9 66658595 66658733 -57417439 + B1_Mus2 SINE Alu 1 138 -9 3 1093 243 270 138 31 chr9 66658915 66659045 -57417127 - L1MB5 LINE L1 -245 5929 5786 3 1093 414 250 74 176 chr9 66659105 66659227 -57416945 - L1MB5 LINE L1 -596 5584 5469 3 1093 874 151 198 16 chr9 66659227 66659409 -57416763 - B3 SINE B2 0 216 2 3 1093 414 250 74 176 chr9 66659409 66659582 -57416590 - L1MB5 LINE L1 -712 5468 5319 3 1093 243 116 23 0 chr9 66659600 66659643 -57416529 - Lx9 LINE L1 -9 7635 7592 3 1093 463 285 132 19 chr9 66659693 66659951 -57416221 - L1MB5 LINE L1 -898 5248 4962 3 1093 210 37 0 0 chr9 66661110 66661137 -57415035 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1093 267 335 59 76 chr9 66661820 66662056 -57414116 + B4 SINE B4 50 281 -11 3 1093 225 191 24 0 chr9 66662113 66662155 -57414017 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1093 707 224 85 0 chr9 66662346 66662511 -57413661 + B3 SINE B2 1 179 -37 3 1093 229 269 19 0 chr9 66662744 66662796 -57413376 + RSINE1 SINE B4 84 136 -29 3 1093 21 36 0 0 chr9 66662796 66662824 -57413348 + AT_rich Low_complexity Low_complexity 1 28 0 3 1093 1351 140 0 5 chr9 66662914 66663122 -57413050 + Lx4B LINE L1 5868 6074 -984 3 1093 1634 133 8 8 chr9 66663115 66663381 -57412791 + Lx4B LINE L1 6705 6951 -107 3 1093 679 323 4 15 chr9 66663418 66663679 -57412493 - L1_Mur3 LINE L1 -6574 1138 881 3 1093 306 239 136 9 chr9 66663901 66664011 -57412161 - L1_Mur3 LINE L1 -6874 838 715 3 1093 1018 107 7 0 chr9 66664137 66664277 -57411895 - B1_Mur4 SINE Alu -8 142 2 3 1093 306 261 68 107 chr9 66664289 66664392 -57411780 - PB1D7 SINE Alu -7 113 15 3 1093 216 0 0 0 chr9 66664578 66664602 -57411570 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 3 1093 649 139 119 6 chr9 66664617 66664752 -57411420 - B2_Mm2 SINE B2 -61 155 1 3 1093 205 169 131 33 chr9 66666863 66666924 -57409248 + MER5B DNA MER1_type 98 164 -14 3 1093 1075 71 43 0 chr9 66667596 66667737 -57408435 + B1_Mm SINE Alu 1 147 0 3 1093 183 80 0 0 chr9 66667737 66667762 -57408410 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1093 376 180 0 0 chr9 66667906 66667967 -57408205 + ID4_ SINE ID 14 74 -9 3 1093 212 321 23 35 chr9 66667967 66667985 -57408187 + RSINE1 SINE B4 30 92 -73 3 1093 264 319 34 14 chr9 66668633 66668779 -57407393 + L2 LINE L2 2543 2691 -728 3 1093 320 331 47 24 chr9 66668825 66668952 -57407220 - RSINE1 SINE B4 -17 148 19 3 1093 355 227 103 0 chr9 66669139 66669236 -57406936 + B1F SINE Alu 35 141 -8 3 1093 270 185 0 100 chr9 66671103 66671163 -57405009 + ID_B1 SINE B4 113 166 -58 3 1093 426 156 0 0 chr9 66671850 66671914 -57404258 + RSINE1 SINE B4 81 144 -21 3 1093 582 217 0 77 chr9 66672995 66673125 -57403047 - PB1D9 SINE Alu 0 120 1 3 1093 191 309 0 93 chr9 66673181 66673288 -57402884 + L2b LINE L2 3049 3145 -230 3 1093 1031 133 0 0 chr9 66674717 66674860 -57401312 + B1_Mus2 SINE Alu 2 144 -3 3 1093 393 58 0 0 chr9 66674860 66674912 -57401260 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 3 1093 401 148 12 0 chr9 66676073 66676154 -57400018 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 1093 753 181 15 18 chr9 66676228 66676436 -57399736 - B3A SINE B2 -11 205 4 3 1093 411 38 0 0 chr9 66676615 66676668 -57399504 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1093 350 286 26 26 chr9 66677757 66677872 -57398300 + PB1D10 SINE Alu 1 115 -2 3 1093 362 283 0 0 chr9 66678374 66678466 -57397706 + ID_B1 SINE B4 133 224 0 3 1093 277 269 57 113 chr9 66678548 66678565 -57397607 + B4 SINE B4 73 222 -70 3 1093 660 211 28 0 chr9 66678565 66678707 -57397465 + B1_Mur1 SINE Alu 1 146 -3 3 1093 294 241 11 63 chr9 66679656 66679691 -57396481 - ID4 SINE ID -43 109 2 3 1093 319 203 13 26 chr9 66679691 66679767 -57396405 - ID SINE ID -148 76 2 3 1093 23 54 0 0 chr9 66679851 66679888 -57396284 + AT_rich Low_complexity Low_complexity 1 37 0 3 1093 568 237 21 49 chr9 66679917 66680059 -57396113 - RSINE1 SINE B4 -22 143 6 3 1093 288 0 0 0 chr9 66680482 66680514 -57395658 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1093 519 177 129 0 chr9 66680565 66680689 -57395483 - B1_Mur2 SINE Alu 0 149 10 3 1093 212 235 14 42 chr9 66680759 66680830 -57395342 + GA-rich Low_complexity Low_complexity 1 69 0 3 1093 210 143 0 0 chr9 66680830 66680865 -57395307 + (CAGG)n Simple_repeat Simple_repeat 3 37 0 3 1093 1347 233 92 22 chr9 66683831 66684288 -57391884 + RMER5 LTR ERV1 46 534 0 3 1093 1163 276 43 17 chr9 66684627 66684977 -57391195 + ORR1E LTR MaLR 1 359 0 3 1093 641 221 61 0 chr9 66685171 66685302 -57390870 - B1_Mur1 SINE Alu -1 148 10 3 1093 661 240 42 32 chr9 66685313 66685502 -57390670 - B3A SINE B2 -1 215 25 3 1093 1501 44 6 6 chr9 66685513 66685695 -57390477 + B2_Mm2 SINE B2 1 182 -13 3 1093 47 0 0 0 chr9 66685695 66685742 -57390430 + AT_rich Low_complexity Low_complexity 1 47 0 3 1093 349 254 173 8 chr9 66685959 66686086 -57390086 - B1F SINE Alu 0 149 2 3 1093 198 338 27 0 chr9 66686140 66686214 -57389958 + L4 LINE RTE 1773 1848 -181 3 1093 225 0 0 0 chr9 66686215 66686240 -57389932 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1093 438 288 23 0 chr9 66686557 66686689 -57389483 - RSINE1 SINE B4 -28 137 3 3 1093 630 293 189 19 chr9 66687152 66687475 -57388697 - MLT1D LTR MaLR -115 390 13 3 1093 1672 115 175 7 chr9 66687659 66687939 -57388233 - ORR1A2 LTR MaLR 0 327 1 3 1093 719 240 7 2 chr9 66688017 66688162 -57388010 + RSINE1 SINE B4 2 134 -31 4 1093 860 179 7 7 chr9 66688186 66688327 -57387845 + B1_Mur4 SINE Alu 2 142 -8 4 1093 650 72 0 10 chr9 66688327 66688425 -57387747 + (GGAA)n Simple_repeat Simple_repeat 2 98 0 4 1093 1092 150 329 3 chr9 66688504 66688790 -57387382 + RLTR33 LTR ERVK 175 553 -125 4 1093 457 236 96 45 chr9 66689422 66689673 -57386499 + L1M2 LINE L1 5168 5436 -742 4 1093 296 247 14 0 chr9 66689677 66689750 -57386422 + U3 snRNA snRNA 1 74 -143 4 1093 1018 242 209 50 chr9 66689765 66690230 -57385942 + MT2B LTR ERVL 1 539 -62 4 1093 650 113 0 9 chr9 66690232 66690339 -57385833 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 1093 360 94 0 0 chr9 66690342 66690395 -57385777 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1093 228 176 84 42 chr9 66690744 66690815 -57385357 + L1M2 LINE L1 5414 5487 -813 4 1093 270 261 28 119 chr9 66690824 66690933 -57385239 + PB1D9 SINE Alu 16 114 -6 4 1093 657 279 156 3 chr9 66690961 66691249 -57384923 + L1MB1 LINE L1 5521 5852 -316 4 1093 549 0 0 0 chr9 66692999 66693060 -57383112 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 1093 459 0 0 0 chr9 66693062 66693113 -57383059 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1093 261 146 0 0 chr9 66693505 66693553 -57382619 + (A)n Simple_repeat Simple_repeat 1 48 0 4 1093 1942 153 128 5 chr9 66696805 66697041 -57379131 - MTC LTR MaLR 0 421 146 4 1093 1184 212 119 22 chr9 66697041 66697412 -57378760 + RMER17C LTR ERVK 1 407 -3 4 1093 1942 153 128 5 chr9 66697412 66697550 -57378622 - MTC LTR MaLR -276 145 3 4 1093 1609 36 0 10 chr9 66697949 66698143 -57378029 - B2_Mm1a SINE B2 0 193 2 4 1093 266 217 116 0 chr9 66698614 66698683 -57377489 - RSINE1 SINE B4 -87 78 2 4 1093 1508 149 38 133 chr9 66699577 66699838 -57376334 + RMER10B LTR ERVL 13 239 -159 4 1093 645 14 0 0 chr9 66699838 66699912 -57376260 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 4 1093 1508 149 38 133 chr9 66699912 66700077 -57376095 + RMER10B LTR ERVL 240 398 0 4 1093 1144 69 0 0 chr9 66701222 66701361 -57374811 + B1_Mus1 SINE Alu 1 139 -9 4 1093 194 0 39 0 chr9 66701361 66701387 -57374785 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1093 1091 63 21 0 chr9 66701438 66701581 -57374591 + B1_Mm SINE Alu 2 147 0 4 1093 746 240 106 34 chr9 66701647 66701997 -57374175 + RMER17C LTR ERVK 2 376 -34 4 1093 332 48 63 0 chr9 66703471 66703534 -57372638 + (GA)n Simple_repeat Simple_repeat 1 67 0 4 1093 1011 115 0 26 chr9 66704190 66704342 -57371830 + B1_Mus1 SINE Alu 1 148 0 4 1093 564 189 19 0 chr9 66704543 66704649 -57371523 - B1_Mur1 SINE Alu -25 124 17 4 1093 22 0 0 0 chr9 66704736 66704758 -57371414 + AT_rich Low_complexity Low_complexity 1 22 0 4 1093 1073 108 24 0 chr9 66704774 66704940 -57371232 + B2_Mm2 SINE B2 15 184 -11 4 1093 187 232 171 0 chr9 66705870 66705952 -57370220 - L2a LINE L2 0 3426 3331 4 1093 888 252 80 45 chr9 66706500 66706865 -57369307 + MTD LTR MaLR 13 407 0 4 1093 213 258 127 16 chr9 66707261 66707324 -57368848 - ID4_ SINE ID 0 83 14 4 1093 236 73 0 109 chr9 66707944 66707974 -57368198 + B1_Mus2 SINE Alu 107 136 -11 4 1093 261 0 0 0 chr9 66707974 66708003 -57368169 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1093 236 73 0 109 chr9 66708003 66708018 -57368154 + B1_Mus2 SINE Alu 137 147 0 4 1093 275 234 94 0 chr9 66709318 66709382 -57366790 + ID4 SINE ID 3 72 -11 4 1093 270 160 0 0 chr9 66710067 66710117 -57366055 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1093 569 300 6 36 chr9 66710195 66710361 -57365811 + MER21B LTR ERV1 595 755 -108 4 1093 782 244 65 28 chr9 66712226 66712441 -57363731 - ID_B1 SINE B4 -1 223 1 4 1093 298 237 101 20 chr9 66713204 66713289 -57362883 + RSINE1 SINE B4 47 140 -25 4 1093 387 0 0 0 chr9 66713289 66713332 -57362840 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1093 298 237 101 20 chr9 66713332 66713345 -57362827 + RSINE1 SINE B4 141 153 -12 4 1093 209 277 0 0 chr9 66713423 66713470 -57362702 + L2a LINE L2 3371 3417 -9 4 1093 613 158 0 26 chr9 66713492 66713598 -57362574 + B1_Mus1 SINE Alu 35 138 -10 4 1093 243 0 0 0 chr9 66713598 66713625 -57362547 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1093 230 174 65 0 chr9 66713668 66713714 -57362458 - B3 SINE B2 -154 62 14 4 1093 552 245 55 66 chr9 66713997 66714260 -57361912 + MER57D LTR ERV1 116 406 -5 4 1093 236 259 35 0 chr9 66714637 66714695 -57361477 - MLT1L LTR MaLR 0 610 551 4 1093 1926 183 91 36 chr9 66714953 66715428 -57360744 + RLTR12B LTR ERVK 21 521 -7 4 1093 333 0 0 0 chr9 66715481 66715518 -57360654 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1093 320 200 74 12 chr9 66715586 66715604 -57360568 - B4 SINE B4 -69 223 207 4 136 563 285 58 0 chr9 66715604 66715741 -57360431 - RSINE1 SINE B4 -19 146 2 4 1094 320 200 74 12 chr9 66715741 66715803 -57360369 - B4 SINE B4 -86 206 139 4 1094 180 0 0 0 chr9 66716940 66716960 -57359212 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1094 754 187 0 7 chr9 66717240 66717375 -57358797 + B1_Mm SINE Alu 1 134 -13 4 1094 303 28 0 0 chr9 66717375 66717411 -57358761 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1094 1020 196 20 20 chr9 66717801 66718004 -57358168 + B3 SINE B2 12 214 -2 4 1094 738 227 31 56 chr9 66718139 66718335 -57357837 - B3A SINE B2 -6 192 2 4 1094 22 0 0 0 chr9 66718335 66718357 -57357815 + AT_rich Low_complexity Low_complexity 1 22 0 4 1094 873 265 0 6 chr9 66718470 66718652 -57357520 - B3A SINE B2 -16 182 2 4 1094 1028 136 0 13 chr9 66718690 66718839 -57357333 + B1_Mur2 SINE Alu 1 147 -2 4 1094 514 294 89 48 chr9 66718873 66719144 -57357028 + B4A SINE B4 3 284 -8 4 1094 1440 136 18 0 chr9 66719340 66719561 -57356611 - URR1B DNA MER1_type 0 225 1 4 1094 1128 95 0 0 chr9 66719566 66719713 -57356459 + B1_Mm SINE Alu 1 147 0 4 1094 22 0 0 0 chr9 66719828 66719850 -57356322 + GC_rich Low_complexity Low_complexity 1 22 0 4 1094 1057 72 52 0 chr9 66720788 66720941 -57355231 + B2_Mm2 SINE B2 1 161 -34 4 1094 297 0 0 0 chr9 66720941 66720974 -57355198 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1094 352 124 14 9 chr9 66721097 66721201 -57354971 - B2_Mm2 SINE B2 -11 184 47 4 1094 1065 94 19 0 chr9 66721253 66721413 -57354759 - B2_Mm1t SINE B2 -14 179 17 4 1094 260 294 15 0 chr9 66721861 66721929 -57354243 - ID4 SINE ID 0 83 15 4 1094 275 350 0 0 chr9 66721936 66722096 -57354076 + (TACTG)n Simple_repeat Simple_repeat 5 164 0 4 1094 2509 188 33 8 chr9 66722483 66722993 -57353179 + MTEa-int LTR MaLR 65 587 -783 4 1094 1425 210 58 25 chr9 66723006 66723367 -57352805 - ORR1D1 LTR MaLR 0 374 2 4 1094 592 244 127 6 chr9 66723378 66723535 -57352637 - B3A SINE B2 -18 180 5 4 1094 869 241 107 0 chr9 66723857 66724110 -57352062 + B4 SINE B4 1 280 -12 4 1094 448 176 22 0 chr9 66724110 66724201 -57351971 - ORR1D1 LTR MaLR -146 228 136 4 1094 499 66 26 0 chr9 66724209 66724285 -57351887 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 1094 507 95 0 0 chr9 66724824 66724898 -57351274 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1094 360 212 0 50 chr9 66725568 66725747 -57350425 + (CTG)n Simple_repeat Simple_repeat 1 170 0 4 1094 1588 52 0 5 chr9 66725947 66726140 -57350032 + B2_Mm1t SINE B2 1 192 -1 4 1094 427 255 151 29 chr9 66726238 66726535 -57349637 + MTEa LTR MaLR 10 379 0 4 1094 243 88 0 0 chr9 66726679 66726713 -57349459 + (GGA)n Simple_repeat Simple_repeat 3 36 0 4 1094 890 170 0 7 chr9 66727132 66727274 -57348898 + B1_Mur4 SINE Alu 1 141 -9 4 1094 186 43 0 0 chr9 66727274 66727297 -57348875 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1094 757 296 6 11 chr9 66727399 66727663 -57348509 + L1MA4 LINE L1 5602 5930 -370 4 1094 21 36 0 0 chr9 66727818 66727846 -57348326 + AT_rich Low_complexity Low_complexity 1 28 0 4 1094 307 251 66 36 chr9 66729274 66729395 -57346777 - PB1D10 SINE Alu 0 120 1 4 1094 183 80 0 0 chr9 66729461 66729486 -57346686 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1094 225 0 0 0 chr9 66729600 66729625 -57346547 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1094 184 30 29 29 chr9 66730070 66730104 -57346068 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1094 496 259 8 17 chr9 66730917 66731035 -57345137 + PB1D10 SINE Alu 1 117 0 4 1094 259 269 60 0 chr9 66731263 66731330 -57344842 - Tigger7 DNA MER2_type -10 2481 2411 4 1094 372 64 100 0 chr9 66731664 66731740 -57344432 + B1_Mus2 SINE Alu 21 147 0 4 1094 273 119 0 0 chr9 66731742 66731784 -57344388 + (GAA)n Simple_repeat Simple_repeat 2 43 0 4 1094 301 261 129 43 chr9 66731911 66732027 -57344145 + Tigger5 DNA MER2_type 2281 2406 0 4 1094 232 322 23 0 chr9 66732113 66732200 -57343972 - Tigger7 DNA MER2_type -2370 121 33 4 1094 553 274 37 37 chr9 66732531 66732694 -57343478 + RSINE1 SINE B4 3 165 0 4 1094 1656 27 0 0 chr9 66732727 66732912 -57343260 - B2_Mm1a SINE B2 -7 186 2 4 1094 277 304 0 12 chr9 66733928 66734008 -57342164 - ID4_ SINE ID -3 80 2 4 1094 396 0 0 0 chr9 66736445 66736489 -57339683 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1094 243 0 0 0 chr9 66736489 66736515 -57339657 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1094 424 289 66 8 chr9 66736563 66736685 -57339487 - B1_Mur1 SINE Alu -20 129 1 4 1094 1131 244 36 42 chr9 66737416 66737724 -57338448 + Lx8 LINE L1 6510 6815 -658 4 1094 684 228 125 16 chr9 66737724 66737916 -57338256 - MTC LTR MaLR 0 421 209 4 1094 472 91 0 0 chr9 66737945 66738011 -57338161 - B1_Mur4 SINE Alu -7 143 78 4 1094 1025 140 78 0 chr9 66738017 66738210 -57337962 - MTC LTR MaLR -213 208 1 4 1094 1663 234 153 25 chr9 66738216 66738698 -57337474 + Lx8 LINE L1 6822 7365 -108 4 1094 15191 67 39 5 chr9 66738698 66741383 -57334789 + L1VL2 LINE L1 193 2988 -627 5 1094 24 0 0 0 chr9 66741504 66741528 -57334644 + AT_rich Low_complexity Low_complexity 1 24 0 5 1094 269 217 120 19 chr9 66741596 66741704 -57334468 + Lx8 LINE L1 7353 7471 -2 4 1094 21 36 0 0 chr9 66742175 66742203 -57333969 + AT_rich Low_complexity Low_complexity 1 28 0 5 1094 23 33 0 0 chr9 66743484 66743514 -57332658 + AT_rich Low_complexity Low_complexity 1 30 0 5 1094 586 209 230 54 chr9 66744996 66745309 -57330863 - RLTR9A LTR ERVK 0 368 1 5 1094 206 288 17 0 chr9 66745407 66745466 -57330706 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1094 274 282 25 13 chr9 66745514 66745593 -57330579 + GA-rich Low_complexity Low_complexity 3 82 0 5 1094 259 228 128 21 chr9 66747660 66747754 -57328418 - L1MA8 LINE L1 -42 6249 6146 5 1094 832 268 119 45 chr9 66747750 66747806 -57328366 + L1MA8 LINE L1 5725 5780 -511 5 1094 216 97 0 0 chr9 66747806 66747837 -57328335 + (CATA)n Simple_repeat Simple_repeat 2 32 0 5 1094 832 268 119 45 chr9 66747837 66747848 -57328324 + L1MA8 LINE L1 5781 5813 -478 5 1094 219 88 0 0 chr9 66747848 66747882 -57328290 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1094 832 268 119 45 chr9 66747882 66748340 -57327832 + L1MA8 LINE L1 5814 6289 -2 5 1094 229 200 64 96 chr9 66748465 66748478 -57327694 + ID_B1 SINE B4 134 174 -50 5 1094 298 191 15 0 chr9 66748478 66748546 -57327626 + B1_Mur2 SINE Alu 74 142 -7 5 1094 229 200 64 96 chr9 66748546 66748559 -57327613 + ID_B1 SINE B4 175 224 0 5 1094 779 80 0 9 chr9 66748559 66748672 -57327500 + (GGGA)n Simple_repeat Simple_repeat 2 113 0 5 1094 589 176 199 6 chr9 66748905 66749076 -57327096 - ORR1D1 LTR MaLR 0 374 171 5 1094 1370 100 11 0 chr9 66749078 66749268 -57326904 + B2_Mm1t SINE B2 1 192 -1 5 1094 384 22 0 0 chr9 66749268 66749313 -57326859 + (GAAA)n Simple_repeat Simple_repeat 1 45 0 5 1094 266 185 19 0 chr9 66749313 66749367 -57326805 - ORR1D1 LTR MaLR -192 182 128 5 1094 575 77 226 19 chr9 66749385 66749491 -57326681 + B1_Mus1 SINE Alu 1 128 -20 5 1094 821 141 7 0 chr9 66749496 66749638 -57326534 - ORR1D1 LTR MaLR -231 143 1 5 1094 1142 45 0 0 chr9 66749737 66749871 -57326301 + B1_Mus1 SINE Alu 1 134 -14 5 1094 267 31 0 0 chr9 66749871 66749903 -57326269 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 5 1094 28 0 0 0 chr9 66750382 66750410 -57325762 + AT_rich Low_complexity Low_complexity 1 28 0 5 1094 409 346 0 0 chr9 66750449 66750553 -57325619 - RSINE1 SINE B4 -60 105 2 5 1094 273 381 22 15 chr9 66750561 66750697 -57325475 - L2b LINE L2 -19 3356 3220 5 1094 691 205 214 22 chr9 66751706 66751935 -57324237 - B4A SINE B4 -18 274 2 5 1094 630 104 0 0 chr9 66752214 66752310 -57323862 + (TCCA)n Simple_repeat Simple_repeat 2 97 0 5 1094 559 140 32 11 chr9 66752324 66752418 -57323754 - B1F SINE Alu -32 117 22 5 1094 234 0 0 0 chr9 66752465 66752491 -57323681 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1094 288 350 55 41 chr9 66753213 66753359 -57322813 + MIR SINE MIR 114 261 -1 5 1094 455 254 39 29 chr9 66755108 66755312 -57320860 + B4 SINE B4 27 292 0 5 1094 638 244 84 13 chr9 66756181 66756335 -57319837 + B3A SINE B2 8 172 -26 5 1094 1227 41 0 0 chr9 66756350 66756497 -57319675 + B1_Mus2 SINE Alu 1 147 0 5 1094 603 0 0 0 chr9 66756749 66756816 -57319356 + (TATAA)n Simple_repeat Simple_repeat 5 71 0 5 1094 3318 244 106 71 chr9 66758360 66758834 -57317338 + Lx6 LINE L1 6062 6737 -723 5 1094 288 0 0 0 chr9 66758834 66758866 -57317306 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 5 1094 3318 213 164 15 chr9 66758866 66759447 -57316725 + Lx6 LINE L1 6738 7436 -24 5 1094 240 79 0 0 chr9 66759454 66759492 -57316680 + B3A SINE B2 1 38 -160 5 1094 21 0 0 0 chr9 66760128 66760149 -57316023 + AT_rich Low_complexity Low_complexity 1 21 0 5 1094 2628 30 0 17 chr9 66760972 66761316 -57314856 - ORR1A0 LTR MaLR -8 338 1 5 1094 284 318 68 23 chr9 66762651 66762783 -57313389 - MER58C DNA MER1_type 0 215 78 5 1094 387 0 0 0 chr9 66764693 66764736 -57311436 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1094 283 306 0 0 chr9 66764748 66764820 -57311352 - tRNA-Ala-GCY_ tRNA tRNA -1 74 3 5 1094 703 249 6 45 chr9 66765020 66765197 -57310975 - B3A SINE B2 -28 170 1 5 1094 819 251 64 0 chr9 66765685 66765888 -57310284 - B3 SINE B2 0 216 1 5 1094 983 119 23 0 chr9 66768179 66768355 -57307817 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1094 582 28 0 0 chr9 66768356 66768428 -57307744 + (GAGAA)n Simple_repeat Simple_repeat 1 72 0 5 1094 399 249 149 16 chr9 66768522 66768710 -57307462 + MIRc SINE MIR 48 260 -8 5 1094 348 184 27 72 chr9 66768989 66769100 -57307072 + Charlie1a DNA MER1_type 1325 1430 -25 5 1094 22 35 0 0 chr9 66769711 66769740 -57306432 + AT_rich Low_complexity Low_complexity 1 29 0 5 1094 733 216 18 131 chr9 66769952 66770181 -57305991 + B3 SINE B2 4 206 -10 5 1094 344 332 62 51 chr9 66771308 66771584 -57304588 - B4 SINE B4 -11 281 3 5 1094 191 289 58 123 chr9 66771936 66772090 -57304082 + L2c LINE L2 3243 3386 -1 5 1094 456 257 18 9 chr9 66773419 66773529 -57302643 - RSINE1 SINE B4 -48 117 7 5 1094 284 289 0 40 chr9 66773533 66773634 -57302538 - BC1_Mm scRNA scRNA -38 114 18 5 1094 775 211 17 50 chr9 66774917 66775097 -57301075 + B3A SINE B2 1 174 -24 5 1094 465 90 0 0 chr9 66775106 66775173 -57300999 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 5 1094 183 80 0 0 chr9 66775263 66775288 -57300884 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1094 356 221 6 28 chr9 66775930 66776107 -57300065 + (TG)n Simple_repeat Simple_repeat 1 173 0 5 1094 225 0 0 0 chr9 66776152 66776177 -57299995 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1094 949 209 151 35 chr9 66776177 66776435 -57299737 - B4A SINE B4 0 292 5 5 1094 781 278 6 155 chr9 66776520 66776861 -57299311 + B4A SINE B4 1 290 -2 5 1094 716 203 203 23 chr9 66776942 66777291 -57298881 - MTD LTR MaLR -2 417 6 5 1094 702 244 0 0 chr9 66777432 66777567 -57298605 - RSINE1 SINE B4 -28 137 3 5 1094 420 182 0 0 chr9 66777646 66777712 -57298460 + ID4_ SINE ID 2 67 -16 5 1094 1043 268 30 101 chr9 66777834 66778226 -57297946 + MTEa LTR MaLR 2 371 -8 5 1094 400 291 66 38 chr9 66779074 66779285 -57296887 - B4A SINE B4 -28 264 48 5 1094 1603 36 0 35 chr9 66779803 66780002 -57296170 - B2_Mm1t SINE B2 0 193 2 5 1094 1165 260 10 27 chr9 66780238 66780531 -57295641 - B4 SINE B4 -2 290 3 5 1094 353 75 0 19 chr9 66780596 66780650 -57295522 + (TTCA)n Simple_repeat Simple_repeat 3 55 0 5 1094 896 236 49 20 chr9 66780653 66780856 -57295316 - ID_B1 SINE B4 -12 212 4 5 1094 2267 108 12 9 chr9 66780884 66781210 -57294962 - ORR1A2 LTR MaLR 0 327 1 5 1094 539 255 55 7 chr9 66781211 66781357 -57294815 - MER2 DNA MER2_type -4 341 189 5 1094 315 315 117 8 chr9 66781373 66781501 -57294671 - MER2 DNA MER2_type -202 143 2 5 1094 866 247 180 10 chr9 66782838 66783142 -57293030 + ORR1D2 LTR MaLR 15 370 0 5 1094 203 318 0 0 chr9 66783432 66783495 -57292677 + MIRb SINE MIR 191 253 -15 5 1094 231 208 0 20 chr9 66783502 66783551 -57292621 + CT-rich Low_complexity Low_complexity 3 50 0 5 1094 2895 245 32 17 chr9 66783999 66784711 -57291461 - RMER1C Other Other -3 1339 625 5 1094 601 221 58 7 chr9 66784771 66784908 -57291264 + B1_Mur1 SINE Alu 5 148 -1 5 1094 327 49 0 0 chr9 66785856 66785897 -57290275 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1094 661 158 74 15 chr9 66786204 66786339 -57289833 + B3A SINE B2 1 143 -55 5 1094 395 260 72 16 chr9 66787113 66787238 -57288934 - B1F1 SINE Alu -8 141 10 5 1094 24 0 0 0 chr9 66787262 66787286 -57288886 + AT_rich Low_complexity Low_complexity 1 24 0 5 1094 348 64 0 0 chr9 66787297 66787344 -57288828 + (TATG)n Simple_repeat Simple_repeat 4 50 0 5 1094 477 269 47 20 chr9 66787347 66787495 -57288677 - RSINE1 SINE B4 -12 153 2 5 1094 728 160 0 0 chr9 66787529 66787648 -57288524 + B1_Mur4 SINE Alu 9 127 -23 5 1094 240 35 0 0 chr9 66787648 66787677 -57288495 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1094 823 236 136 4 chr9 66787780 66788031 -57288141 + B4A SINE B4 1 284 -8 5 1094 268 304 29 29 chr9 66788034 66788139 -57288033 + (CATATA)n Simple_repeat Simple_repeat 2 106 0 5 1094 270 0 0 0 chr9 66788144 66788174 -57287998 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1094 439 219 43 17 chr9 66789097 66789213 -57286959 - PB1D9 SINE Alu -1 119 1 5 1094 602 67 0 0 chr9 66789251 66789326 -57286846 - Lx LINE L1 -955 5699 5625 5 1094 1144 113 5 5 chr9 66789326 66789512 -57286660 + Lx2 LINE L1 6808 6993 -4 5 1094 239 259 106 49 chr9 66789531 66789660 -57286512 - MLT1A0 LTR MaLR -22 343 207 5 1094 264 170 0 36 chr9 66789660 66789715 -57286457 - MER5B DNA MER1_type 0 178 126 5 1094 379 313 45 8 chr9 66790623 66790755 -57285417 + MT2A LTR ERVL 305 441 -92 5 1094 334 278 11 11 chr9 66790755 66790846 -57285326 + CT-rich Low_complexity Low_complexity 5 95 0 5 1094 700 154 106 0 chr9 66790895 66791017 -57285155 - B1_Mur4 SINE Alu -7 143 9 5 1094 558 175 21 0 chr9 66791017 66791114 -57285058 + RMER10A LTR ERVL 2 100 -342 5 1094 556 161 98 92 chr9 66791105 66791269 -57284903 + RMER10A LTR ERVL 233 397 -1 5 1094 425 256 107 50 chr9 66791350 66791490 -57284682 - RSINE1 SINE B4 -16 149 2 5 1094 627 309 28 36 chr9 66791624 66791763 -57284409 - MLT1D LTR MaLR -12 493 353 5 1094 1570 11 15 64 chr9 66791763 66791965 -57284207 - B2_Mm1a SINE B2 0 193 2 5 1094 627 309 28 36 chr9 66791965 66792077 -57284095 - MLT1D LTR MaLR -153 352 244 5 1094 487 241 9 0 chr9 66792084 66792192 -57283980 + PB1D10 SINE Alu 9 117 0 5 1094 189 74 0 0 chr9 66792210 66792237 -57283935 + (CCCCCA)n Simple_repeat Simple_repeat 5 31 0 5 1094 1232 251 43 35 chr9 66792237 66792584 -57283588 - ORR1D2 LTR MaLR -16 354 5 5 1094 534 291 33 13 chr9 66792752 66792905 -57283267 - ID_B1 SINE B4 -52 172 17 6 1094 337 247 12 12 chr9 66793011 66793093 -57283079 - B4 SINE B4 -5 287 206 6 1094 378 259 12 0 chr9 66793273 66793354 -57282818 - ID SINE ID -142 82 1 6 1094 537 283 10 65 chr9 66793362 66793575 -57282597 - B3A SINE B2 -3 195 8 6 1094 225 0 0 0 chr9 66795511 66795536 -57280636 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1094 1253 34 0 0 chr9 66795536 66795684 -57280488 - B1_Mus1 SINE Alu 0 148 1 6 1094 593 191 376 0 chr9 66795757 66795914 -57280258 + B3 SINE B2 1 216 0 6 1094 29 104 0 0 chr9 66796269 66796375 -57279797 + AT_rich Low_complexity Low_complexity 1 106 0 6 1094 249 318 101 18 chr9 66796554 66796663 -57279509 + B4A SINE B4 77 194 -98 6 1094 661 162 34 0 chr9 66796568 66796685 -57279487 + B1_Mus2 SINE Alu 5 125 -22 6 1094 252 122 0 0 chr9 66797327 66797368 -57278804 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1094 1315 68 22 22 chr9 66797368 66797547 -57278625 - B2_Mm2 SINE B2 -16 179 1 6 1094 8264 50 3 2 chr9 66797959 66799069 -57277103 - L1Md_F2 LINE L1 0 6582 5472 6 1094 288 265 15 6 chr9 66799074 66799152 -57277020 + ID4 SINE ID 17 92 -60 6 1094 537 173 54 18 chr9 66799415 66799527 -57276645 - B1_Mur4 SINE Alu 0 150 35 6 1094 946 125 21 0 chr9 66799647 66799791 -57276381 - B1_Mur4 SINE Alu -2 148 2 6 1094 273 318 11 11 chr9 66800193 66800282 -57275890 - MLT1H LTR MaLR -7 542 454 6 1094 615 157 174 0 chr9 66800728 66800849 -57275323 - B1_Mur2 SINE Alu -6 143 2 6 1094 383 355 50 5 chr9 66801703 66801901 -57274271 - B4A SINE B4 -9 283 77 6 1094 288 226 83 64 chr9 66802162 66802271 -57273901 + MLT1F LTR MaLR 1 111 -437 6 1094 1135 78 0 0 chr9 66802790 66802932 -57273240 + B1_Mus2 SINE Alu 1 142 -5 6 1094 198 0 0 0 chr9 66802937 66802959 -57273213 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 6 1094 227 103 26 0 chr9 66802962 66803001 -57273171 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1094 284 170 247 0 chr9 66803078 66803165 -57273007 + B1F SINE Alu 10 117 0 6 1094 238 239 28 0 chr9 66805586 66805657 -57270515 - ID2 SINE ID -8 75 3 6 1094 432 234 31 21 chr9 66805966 66806062 -57270110 - PB1D10 SINE Alu -1 116 20 6 1094 226 283 17 0 chr9 66806453 66806513 -57269659 - MER5A1 DNA MER1_type -104 62 2 6 1094 190 214 51 92 chr9 66806584 66806682 -57269490 - L2c LINE L2 -381 3006 2913 6 1094 514 58 23 11 chr9 66806687 66806774 -57269398 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 6 1094 198 0 0 0 chr9 66806774 66806796 -57269376 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1094 701 132 0 0 chr9 66807269 66807375 -57268797 - B3 SINE B2 -110 106 1 6 1094 1547 145 160 30 chr9 66807573 66807936 -57268236 + RMER17C LTR ERVK 1 410 0 6 1094 827 219 60 97 chr9 66808022 66808239 -57267933 + B3 SINE B2 7 215 -1 6 1094 644 262 0 0 chr9 66808257 66808398 -57267774 - B1F SINE Alu -7 142 2 6 1094 1203 36 0 0 chr9 66808620 66808760 -57267412 + B1_Mus1 SINE Alu 1 140 -8 6 1094 207 0 0 0 chr9 66808760 66808783 -57267389 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1094 324 216 68 0 chr9 66809408 66809482 -57266690 + ID4 SINE ID 5 83 0 6 1094 531 0 0 0 chr9 66809644 66809703 -57266469 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1094 1174 62 89 36 chr9 66809939 66810107 -57266065 + B2_Mm2 SINE B2 1 177 -18 6 1094 301 320 88 0 chr9 66810759 66810884 -57265288 - B1F1 SINE Alu -9 140 5 6 1094 782 179 21 0 chr9 66811153 66811298 -57264874 - B1_Mur2 SINE Alu -1 148 1 6 1094 21 0 0 0 chr9 66811357 66811378 -57264794 + AT_rich Low_complexity Low_complexity 1 21 0 6 1094 724 152 15 36 chr9 66811395 66811518 -57264654 + B1_Mur4 SINE Alu 15 139 -11 6 1094 297 0 0 0 chr9 66811518 66811551 -57264621 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1094 724 152 15 36 chr9 66811551 66811564 -57264608 + B1_Mur4 SINE Alu 140 148 -2 6 1094 454 231 9 18 chr9 66811734 66811844 -57264328 - ID_B1 SINE B4 -107 117 9 6 1094 579 283 34 11 chr9 66811932 66812141 -57264031 + B3A SINE B2 2 205 -11 6 1094 1555 47 16 5 chr9 66812163 66812355 -57263817 + B2_Mm2 SINE B2 2 195 0 6 1094 405 287 142 65 chr9 66812589 66812850 -57263322 + B4A SINE B4 2 282 -10 6 1094 500 248 9 0 chr9 66813663 66813776 -57262396 + PB1D10 SINE Alu 3 116 -1 6 1094 641 195 55 0 chr9 66813797 66813925 -57262247 + B3A SINE B2 1 135 -63 6 1094 371 119 0 15 chr9 66813930 66813998 -57262174 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1094 303 248 44 81 chr9 66814062 66814198 -57261974 + L1MC4 LINE L1 7016 7146 -896 6 1094 427 243 175 0 chr9 66814208 66814385 -57261787 + B3 SINE B2 5 212 -4 6 1094 242 250 75 0 chr9 66814404 66814484 -57261688 + L1MC4 LINE L1 7336 7421 -621 6 1094 670 225 283 7 chr9 66814561 66814837 -57261335 + L1MC4 LINE L1 7688 8040 -2 6 1094 415 272 10 3 chr9 66815001 66815119 -57261053 - B1F SINE Alu -24 126 9 6 1094 1390 79 10 16 chr9 66815164 66815356 -57260816 + B2_Mm1t SINE B2 2 192 -1 6 1094 464 137 10 0 chr9 66816522 66816624 -57259548 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 6 1094 223 220 20 0 chr9 66816625 66816675 -57259497 + CT-rich Low_complexity Low_complexity 2 52 0 6 1094 772 180 8 0 chr9 66816676 66816804 -57259368 - B1_Mus1 SINE Alu -19 129 1 6 1094 29 0 0 0 chr9 66817025 66817054 -57259118 + AT_rich Low_complexity Low_complexity 1 29 0 6 1094 266 269 10 41 chr9 66817096 66817193 -57258979 - B3A SINE B2 -57 141 48 6 1094 561 182 44 26 chr9 66817291 66817404 -57258768 + PB1D7 SINE Alu 1 115 -5 6 1094 470 227 59 0 chr9 66817673 66817792 -57258380 + B4 SINE B4 7 132 -160 6 1094 529 189 108 0 chr9 66817790 66817901 -57258271 + RSINE1 SINE B4 10 132 -33 6 1094 314 307 0 0 chr9 66817946 66818021 -57258151 + B4 SINE B4 216 290 -2 6 1094 524 234 6 0 chr9 66818085 66818252 -57257920 + (CA)n Simple_repeat Simple_repeat 1 168 0 6 1094 1127 58 0 0 chr9 66819301 66819438 -57256734 - B1_Mus2 SINE Alu -10 137 1 6 1094 214 147 0 0 chr9 66819558 66819592 -57256580 - PB1D10 SINE Alu -21 96 63 6 1094 980 211 178 117 chr9 66819610 66820105 -57256067 + MT2A LTR ERVL 1 525 -8 6 1094 26 30 0 0 chr9 66820529 66820562 -57255610 + AT_rich Low_complexity Low_complexity 1 33 0 6 1094 321 89 0 0 chr9 66820599 66820644 -57255528 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1094 480 245 0 0 chr9 66820651 66820745 -57255427 - RSINE1 SINE B4 -31 134 41 6 1094 453 178 0 0 chr9 66820739 66820812 -57255360 + B3 SINE B2 132 204 -12 6 1094 696 200 68 7 chr9 66820812 66820958 -57255214 - B3A SINE B2 -42 156 2 6 1094 287 221 261 23 chr9 66820972 66821060 -57255112 - PB1D10 SINE Alu -7 110 2 6 1094 787 176 7 33 chr9 66821221 66821374 -57254798 + B1_Mur3 SINE Alu 1 149 0 6 1094 225 154 0 0 chr9 66821381 66821420 -57254752 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1094 1304 85 17 22 chr9 66821541 66821721 -57254451 + B2_Mm2 SINE B2 3 181 -14 6 1094 528 258 130 11 chr9 66821779 66821963 -57254209 - ID_B1 SINE B4 -16 208 3 6 1094 212 220 0 74 chr9 66822312 66822366 -57253806 - ID4 SINE ID -32 51 2 6 1094 433 340 8 35 chr9 66823412 66823677 -57252495 + CT-rich Low_complexity Low_complexity 1 257 0 6 1094 356 265 19 29 chr9 66823776 66823881 -57252291 + B4A SINE B4 10 113 -179 6 1094 211 333 26 26 chr9 66824103 66824217 -57251955 - MIRb SINE MIR -77 191 78 6 1094 865 268 154 16 chr9 66824408 66824840 -57251332 + MER67A LTR ERV1 23 649 -12 6 1094 596 226 96 0 chr9 66825113 66825259 -57250913 + ID_B1 SINE B4 3 162 -62 6 1094 261 0 0 0 chr9 66825620 66825649 -57250523 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1094 424 297 156 15 chr9 66825649 66825945 -57250227 - L1M5 LINE L1 -376 5802 5476 6 1094 689 132 0 0 chr9 66825958 66826064 -57250108 - B1_Mus2 SINE Alu -21 126 21 6 1094 277 298 9 40 chr9 66826080 66826232 -57249940 - L1M5 LINE L1 -831 5481 5341 6 1094 616 196 91 11 chr9 66826369 66826544 -57249628 - B3 SINE B2 -1 215 27 6 1094 667 190 175 17 chr9 66826723 66826900 -57249272 - B3 SINE B2 -11 205 1 6 1094 216 0 0 0 chr9 66826905 66826929 -57249243 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 6 1094 404 238 57 9 chr9 66826937 66827043 -57249129 - B1F SINE Alu -36 113 3 6 1094 27 0 0 0 chr9 66827054 66827081 -57249091 + AT_rich Low_complexity Low_complexity 1 27 0 6 1094 970 199 75 0 chr9 66827081 66827282 -57248890 - B3 SINE B2 0 216 1 6 1094 656 293 68 61 chr9 66827287 66827619 -57248553 + L1MD2 LINE L1 5915 6258 -101 6 1094 1722 21 0 0 chr9 66827619 66827810 -57248362 - B2_Mm1a SINE B2 -2 191 1 6 1094 656 293 68 61 chr9 66827810 66827917 -57248255 + L1MD2 LINE L1 6259 6356 -3 6 1094 466 286 56 30 chr9 66828339 66828537 -57247635 + B3 SINE B2 2 204 -12 6 1094 249 108 0 0 chr9 66828752 66828789 -57247383 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1094 200 143 0 23 chr9 66828835 66828878 -57247294 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1094 313 208 0 0 chr9 66828918 66828990 -57247182 - U6 snRNA snRNA -29 78 7 6 1094 1519 161 94 85 chr9 66829104 66829155 -57247017 - MTD LTR MaLR 0 419 385 6 1094 314 23 23 0 chr9 66829155 66829198 -57246974 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1094 1519 161 94 85 chr9 66829198 66829559 -57246613 - MTD LTR MaLR -35 384 3 6 1094 225 175 0 0 chr9 66829605 66829645 -57246527 + A-rich Low_complexity Low_complexity 1 40 0 7 1094 240 35 0 0 chr9 66830202 66830231 -57245941 + (TTG)n Simple_repeat Simple_repeat 3 31 0 7 1094 434 245 0 41 chr9 66830249 66830347 -57245825 + B4A SINE B4 1 94 -198 7 1094 1168 84 84 0 chr9 66830347 66830514 -57245658 + B2_Mm2 SINE B2 1 181 -14 7 1094 327 91 295 74 chr9 66830580 66830702 -57245470 + B2_Mm2 SINE B2 47 195 0 7 1094 693 227 13 20 chr9 66830702 66830855 -57245317 + B4A SINE B4 82 233 -59 7 1094 339 25 0 0 chr9 66830900 66830940 -57245232 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1094 291 169 23 35 chr9 66831843 66831929 -57244243 + CT-rich Low_complexity Low_complexity 2 86 0 7 1094 638 262 67 16 chr9 66831977 66832171 -57244001 - ID_B1 SINE B4 -19 205 2 7 1094 374 0 22 0 chr9 66832476 66832522 -57243650 + (ATTG)n Simple_repeat Simple_repeat 4 50 0 7 1094 514 276 0 0 chr9 66832557 66832680 -57243492 - RSINE1 SINE B4 -35 130 8 7 1094 272 236 112 89 chr9 66832905 66833086 -57243086 + ORR1E LTR MaLR 3 178 -206 7 1094 1131 212 123 52 chr9 66833232 66833556 -57242616 - MTEa LTR MaLR 0 379 33 7 1094 986 141 122 70 chr9 66833891 66834105 -57242067 - URR1A DNA MER1_type 0 226 2 7 1094 855 94 8 23 chr9 66834235 66834366 -57241806 - B1_Mus1 SINE Alu -12 136 8 7 1094 341 276 140 26 chr9 66834369 66834528 -57241644 - MLT1A LTR MaLR -214 176 6 7 1094 370 254 71 39 chr9 66834584 66834711 -57241461 - MLT1D LTR MaLR -332 173 43 7 1094 257 197 0 16 chr9 66834730 66834792 -57241380 + CT-rich Low_complexity Low_complexity 1 61 0 7 1094 678 85 0 0 chr9 66835217 66835311 -57240861 + (TC)n Simple_repeat Simple_repeat 1 94 0 7 1094 440 229 133 73 chr9 66835325 66835490 -57240682 - MTE2a LTR MaLR -1 378 204 7 1094 252 0 0 0 chr9 66835764 66835792 -57240380 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1094 397 199 58 56 chr9 66835803 66835910 -57240262 - PB1D10 SINE Alu -7 110 5 7 1094 180 329 27 14 chr9 66836057 66836131 -57240041 - L2a LINE L2 -7 3419 3345 7 1094 180 371 39 62 chr9 66836483 66836661 -57239511 - L2a LINE L2 -601 2818 2645 7 1094 228 267 17 0 chr9 66837290 66837350 -57238822 + (TATG)n Simple_repeat Simple_repeat 2 62 0 7 1094 1419 232 14 14 chr9 66837351 66837635 -57238537 - B4A SINE B4 0 292 9 7 1094 1449 65 38 0 chr9 66838495 66838680 -57237492 + B2_Mm2 SINE B2 2 193 -2 7 1094 491 287 44 19 chr9 66838978 66839138 -57237034 - MLT1B LTR MaLR -12 378 215 7 1094 573 88 0 0 chr9 66839211 66839291 -57236881 + (GGGGA)n Simple_repeat Simple_repeat 4 83 0 7 1094 630 96 181 94 chr9 66839597 66839735 -57236437 - B1_Mur4 SINE Alu 0 150 1 7 1094 273 283 63 45 chr9 66840329 66840440 -57235732 - ORR1E LTR MaLR 0 359 247 7 1094 1584 220 76 0 chr9 66840881 66841222 -57234950 - ORR1D2 LTR MaLR 0 370 4 7 1094 385 315 0 22 chr9 66841331 66841422 -57234750 + B4A SINE B4 2 90 -202 7 1094 474 266 135 26 chr9 66841456 66841649 -57234523 + B3 SINE B2 2 215 -1 7 1094 854 273 4 118 chr9 66841687 66841821 -57234351 + B4A SINE B4 83 201 -91 7 1094 779 171 35 28 chr9 66841821 66841965 -57234207 + B1_Mus2 SINE Alu 2 146 -1 7 1094 854 273 4 118 chr9 66841965 66842067 -57234105 + B4A SINE B4 202 292 0 7 1094 229 305 86 58 chr9 66842164 66842303 -57233869 - MIRb SINE MIR -23 245 103 7 1094 409 239 8 131 chr9 66842871 66842951 -57233221 + Charlie1a DNA MER1_type 1328 1400 -55 7 1094 967 139 14 0 chr9 66842951 66843095 -57233077 - B1_Mus1 SINE Alu -2 146 1 7 1094 409 239 8 131 chr9 66843095 66843144 -57233028 + Charlie1a DNA MER1_type 1401 1441 -14 7 1094 309 298 47 19 chr9 66843152 66843258 -57232914 - L1M4b LINE L1 -5388 1946 1838 7 1094 981 138 0 14 chr9 66843260 66843407 -57232765 - B1_Mus1 SINE Alu -3 145 1 7 1094 225 0 0 0 chr9 66843441 66843466 -57232706 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1094 914 264 54 61 chr9 66843878 66844172 -57232000 + B4 SINE B4 1 292 0 7 1094 216 182 0 0 chr9 66844172 66844216 -57231956 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1094 229 224 299 0 chr9 66844332 66844399 -57231773 + MIRc SINE MIR 61 147 -121 7 1094 279 0 0 0 chr9 66844800 66844831 -57231341 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1094 3444 33 0 10 chr9 66844841 66845239 -57230933 - MTA_Mm LTR MaLR -2 394 1 7 1094 1287 101 11 6 chr9 66845247 66845427 -57230745 + B2_Mm2 SINE B2 1 181 -14 7 1094 664 285 128 8 chr9 66845643 66845901 -57230271 - B4A SINE B4 -3 289 1 7 1094 243 0 0 0 chr9 66846034 66846061 -57230111 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 7 1094 1272 49 25 0 chr9 66846065 66846228 -57229944 - B2_Mm2 SINE B2 -24 171 5 7 1094 185 94 31 0 chr9 66846229 66846261 -57229911 + (TTG)n Simple_repeat Simple_repeat 1 33 0 7 1094 252 0 0 0 chr9 66846262 66846290 -57229882 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1094 1258 21 14 0 chr9 66846290 66846435 -57229737 - B1_Mm SINE Alu 0 147 1 7 1094 938 155 0 7 chr9 66846438 66846581 -57229591 - B1_Mur2 SINE Alu -2 147 6 7 1094 231 244 45 129 chr9 66846446 66846601 -57229571 + YREP_Mm Unknown Unknown 186 327 -1485 7 1095 25 0 0 0 chr9 66846768 66846793 -57229379 + AT_rich Low_complexity Low_complexity 1 25 0 7 1095 773 246 81 16 chr9 66846821 66847007 -57229165 - B3A SINE B2 0 198 1 7 1095 1534 50 17 0 chr9 66847031 66847212 -57228960 - B2_Mm1t SINE B2 -8 185 2 7 1095 1482 59 0 41 chr9 66847425 66847619 -57228553 - B2_Mm1a SINE B2 -7 186 1 7 1095 201 39 0 0 chr9 66847978 66848004 -57228168 + (CAAAT)n Simple_repeat Simple_repeat 2 27 0 7 1095 835 148 0 0 chr9 66848047 66848182 -57227990 - L1_Mur3 LINE L1 -691 5189 5055 7 1095 640 217 0 37 chr9 66848182 66848316 -57227856 + ID_B1 SINE B4 96 224 0 7 1095 408 268 83 109 chr9 66848304 66848420 -57227752 + MT2B LTR ERVL 41 150 -451 7 1095 856 130 0 0 chr9 66848420 66848543 -57227629 + B1_Mur4 SINE Alu 2 124 -26 7 1095 675 135 23 0 chr9 66848547 66848680 -57227492 + GA-rich Low_complexity Low_complexity 1 136 0 7 1095 1311 71 66 6 chr9 66848789 66848972 -57227200 - B2_Mm2 SINE B2 -1 194 1 7 1095 396 59 0 0 chr9 66848993 66849044 -57227128 + (A)n Simple_repeat Simple_repeat 1 51 0 7 1095 378 235 157 0 chr9 66849337 66849439 -57226733 + B3A SINE B2 8 125 -73 7 1095 195 253 181 0 chr9 66849697 66849780 -57226392 + MIR SINE MIR 91 188 -74 7 1095 339 308 0 13 chr9 66849845 66849924 -57226248 + B3A SINE B2 2 79 -119 7 1095 191 157 0 19 chr9 66849946 66849998 -57226174 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 7 1095 1185 43 0 0 chr9 66850008 66850148 -57226024 + B1_Mus2 SINE Alu 1 140 -7 7 1095 294 29 0 0 chr9 66850151 66850186 -57225986 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1095 1431 53 0 36 chr9 66850490 66850529 -57225643 - B2_Mm1a SINE B2 -4 189 156 7 1095 243 0 0 0 chr9 66850529 66850556 -57225616 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1095 1431 53 0 36 chr9 66850556 66850712 -57225460 - B2_Mm1a SINE B2 -38 155 1 7 1095 524 267 77 93 chr9 66850732 66850926 -57225246 - B3A SINE B2 -6 192 2 7 1095 228 111 0 0 chr9 66852097 66852133 -57224039 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1095 198 0 0 0 chr9 66852489 66852511 -57223661 + (TTC)n Simple_repeat Simple_repeat 2 23 0 7 1095 225 326 60 20 chr9 66852592 66852692 -57223480 - B4A SINE B4 -2 290 187 7 1095 402 198 33 11 chr9 66852727 66852819 -57223353 - B4A SINE B4 -198 94 1 7 1095 440 360 44 32 chr9 66852820 66853159 -57223013 - ORSL-2b DNA Tip100 -136 372 30 7 1095 207 100 0 0 chr9 66854989 66855019 -57221153 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1095 248 288 43 43 chr9 66855067 66855136 -57221036 - B4A SINE B4 0 292 224 7 1095 193 279 23 102 chr9 66855356 66855444 -57220728 + MIR3 SINE MIR 128 208 0 7 1095 1218 242 24 61 chr9 66855635 66855930 -57220242 + B4A SINE B4 9 292 0 7 1095 927 152 0 0 chr9 66855931 66856262 -57219910 + (CA)n Simple_repeat Simple_repeat 1 331 0 7 1095 25 0 0 0 chr9 66857170 66857195 -57218977 + AT_rich Low_complexity Low_complexity 1 25 0 7 1095 581 246 15 87 chr9 66857219 66857415 -57218757 - B3A SINE B2 -15 183 2 7 1095 523 314 66 24 chr9 66857419 66857631 -57218541 - MER58B DNA MER1_type -10 331 111 7 1095 635 251 108 33 chr9 66857666 66857880 -57218292 - B4A SINE B4 -61 231 2 7 1095 239 304 83 42 chr9 66857927 66858023 -57218149 - MER58B DNA MER1_type -241 100 1 7 1095 311 320 186 8 chr9 66858184 66858313 -57217859 + RSINE1 SINE B4 2 153 -12 7 1095 252 200 0 0 chr9 66858339 66858419 -57217753 + GA-rich Low_complexity Low_complexity 1 80 0 7 1095 924 128 6 92 chr9 66858503 66858667 -57217505 - B1_Mur4 SINE Alu 0 150 1 7 1095 316 298 122 108 chr9 66858857 66859218 -57216954 - ORR1E LTR MaLR -5 373 8 7 1095 536 273 0 83 chr9 66859478 66859610 -57216562 - B4 SINE B4 -163 129 9 7 1095 1424 247 79 8 chr9 66859799 66860190 -57215982 - MTD LTR MaLR 0 419 1 7 1095 531 0 0 0 chr9 66860505 66860564 -57215608 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1095 225 197 78 47 chr9 66861042 66861106 -57215066 + LSU-rRNA_Hsa rRNA rRNA 4322 4387 -648 7 1095 250 246 140 35 chr9 66861352 66861472 -57214700 - MIRc SINE MIR -110 158 23 7 1095 674 12 12 0 chr9 66861786 66861869 -57214303 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 7 1095 21 0 0 0 chr9 66861904 66861925 -57214247 + AT_rich Low_complexity Low_complexity 1 21 0 7 1095 781 19 83 6 chr9 66862289 66862446 -57213726 + (TC)n Simple_repeat Simple_repeat 2 170 0 7 1095 342 0 0 0 chr9 66862709 66862747 -57213425 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1095 198 0 0 0 chr9 66862747 66862768 -57213404 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1095 255 338 13 0 chr9 66862875 66862952 -57213220 - B4A SINE B4 -214 78 1 8 1095 483 191 181 0 chr9 66863159 66863253 -57212919 + B1_Mur1 SINE Alu 18 128 -21 8 1095 851 278 10 0 chr9 66863997 66864202 -57211970 - ID_B1 SINE B4 -17 207 1 8 1095 598 287 6 37 chr9 66864263 66864426 -57211746 - RSINE1 SINE B4 0 165 8 8 1095 180 125 0 0 chr9 66864616 66864648 -57211524 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 8 1095 273 57 0 0 chr9 66864902 66864937 -57211235 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1095 531 45 0 0 chr9 66865035 66865101 -57211071 + (TC)n Simple_repeat Simple_repeat 2 67 0 8 1095 971 94 0 0 chr9 66865125 66865253 -57210919 - B1_Mus1 SINE Alu -9 139 12 8 1095 285 260 47 0 chr9 66865156 66865283 -57210889 - ORR1B1-int LTR MaLR -755 754 622 8 1095 916 247 50 29 chr9 66865471 66865524 -57210648 - B4A SINE B4 -10 282 232 8 1095 688 160 240 77 chr9 66865524 66865707 -57210465 - B3 SINE B2 -3 213 1 8 1095 916 247 50 29 chr9 66865707 66865891 -57210281 - B4A SINE B4 -61 231 40 8 1095 1167 244 141 3 chr9 66866708 66867049 -57209123 - MTD LTR MaLR -1 418 31 8 1095 667 257 49 0 chr9 66867335 66867479 -57208693 - B4 SINE B4 -13 279 129 8 1095 884 182 116 11 chr9 66867501 66867690 -57208482 - B3 SINE B2 0 216 8 8 1095 189 0 0 0 chr9 66868437 66868458 -57207714 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1095 309 183 0 0 chr9 66868508 66868568 -57207604 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 8 1095 564 287 8 0 chr9 66872991 66873113 -57203059 + RSINE1 SINE B4 3 125 -40 8 1095 234 136 0 0 chr9 66874471 66874515 -57201657 + (A)n Simple_repeat Simple_repeat 1 44 0 8 1095 279 0 0 0 chr9 66874633 66874664 -57201508 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1095 229 104 104 0 chr9 66875637 66875685 -57200487 + A-rich Low_complexity Low_complexity 3 55 0 8 1095 605 260 14 0 chr9 66876813 66876959 -57199213 - B1_Mur1 SINE Alu 0 149 2 8 1095 387 0 0 0 chr9 66879160 66879203 -57196969 + (TC)n Simple_repeat Simple_repeat 1 43 0 8 1095 468 0 0 0 chr9 66879203 66879254 -57196918 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1095 846 108 30 15 chr9 66882146 66882278 -57193894 + B1_Mus2 SINE Alu 1 134 -13 8 1095 465 103 0 0 chr9 66882285 66882353 -57193819 + (GA)n Simple_repeat Simple_repeat 1 68 0 8 1095 568 78 0 0 chr9 66882495 66882572 -57193600 - B1_Mur4 SINE Alu 0 150 74 8 1095 502 152 33 0 chr9 66882609 66882701 -57193471 - B3 SINE B2 0 216 122 8 1095 1059 263 58 11 chr9 66883156 66883433 -57192739 + MTE2b LTR MaLR 1 290 -89 8 1095 838 223 81 20 chr9 66883537 66883734 -57192438 - B3 SINE B2 -7 209 1 8 1095 307 295 102 73 chr9 66884376 66884581 -57191591 + HAL1-2a_MD LINE L1 1188 1398 -1626 8 1095 1088 90 0 0 chr9 66885362 66885506 -57190666 + B1_Mus2 SINE Alu 2 145 -2 8 1095 690 198 133 41 chr9 66885828 66886023 -57190149 - B3 SINE B2 -3 213 1 8 1095 24 32 0 0 chr9 66886126 66886157 -57190015 + AT_rich Low_complexity Low_complexity 1 31 0 8 1095 243 0 0 0 chr9 66889508 66889535 -57186637 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1095 237 163 0 39 chr9 66891692 66891743 -57184429 + (CGGG)n Simple_repeat Simple_repeat 4 52 0 8 1095 414 268 129 37 chr9 66892222 66892439 -57183733 + MIR SINE MIR 8 244 -18 8 1095 183 80 0 0 chr9 66892761 66892786 -57183386 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1095 282 143 0 0 chr9 66895839 66895888 -57180284 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 1095 276 53 0 0 chr9 66897876 66897914 -57178258 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1095 1631 37 11 0 chr9 66898097 66898288 -57177884 + B2_Mm1a SINE B2 1 193 0 8 1095 324 0 0 0 chr9 66898288 66898324 -57177848 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1095 322 273 0 0 chr9 66898324 66898390 -57177782 - RSINE1 SINE B4 -97 68 3 8 1095 293 235 71 0 chr9 66899561 66899646 -57176526 - ID_B1 SINE B4 -29 195 105 8 1095 692 220 62 45 chr9 66899785 66899961 -57176211 - B4 SINE B4 -12 280 102 8 1095 552 344 169 18 chr9 66900490 66900833 -57175339 + MLT1I LTR MaLR 17 411 0 8 1095 1364 214 97 43 chr9 66901258 66901610 -57174562 - MTE2b LTR MaLR -4 375 5 8 1095 545 277 9 0 chr9 66901814 66901926 -57174246 - PB1D7 SINE Alu -7 113 1 8 1095 293 312 104 68 chr9 66901982 66902308 -57173864 - ORR1C1 LTR MaLR -5 373 36 8 1095 854 172 21 0 chr9 66902342 66902487 -57173685 - B1_Mur4 SINE Alu -2 148 1 8 1095 190 179 0 35 chr9 66902706 66902764 -57173408 + CT-rich Low_complexity Low_complexity 1 56 0 8 1095 427 281 109 0 chr9 66902788 66902916 -57173256 - B1F SINE Alu -5 144 3 8 1095 1654 27 0 0 chr9 66903581 66903769 -57172403 - B2_Mm1a SINE B2 -5 188 1 8 1095 826 206 67 67 chr9 66903922 66904115 -57172057 - B3A SINE B2 -1 194 2 8 1095 25 31 0 0 chr9 66904353 66904385 -57171787 + AT_rich Low_complexity Low_complexity 1 32 0 8 1095 544 282 128 70 chr9 66904446 66904759 -57171413 - MTEa LTR MaLR -43 336 6 8 1095 408 20 0 0 chr9 66904826 66904875 -57171297 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1095 606 262 120 5 chr9 66905228 66905420 -57170752 + ID_B1 SINE B4 2 215 -9 8 1095 712 242 37 180 chr9 66905438 66905690 -57170482 + B4 SINE B4 1 211 -81 8 1095 604 197 17 8 chr9 66905690 66905808 -57170364 - PB1D9 SINE Alu -1 119 1 8 1095 712 242 37 180 chr9 66905808 66905877 -57170295 + B4 SINE B4 212 276 -16 8 1095 1431 54 0 0 chr9 66905877 66906230 -57169942 + (CA)n Simple_repeat Simple_repeat 1 353 0 8 1095 969 248 14 19 chr9 66906594 66906808 -57169364 - B3 SINE B2 -3 213 1 8 1095 285 101 55 22 chr9 66907390 66907481 -57168691 + T-rich Low_complexity Low_complexity 6 99 0 8 1095 824 250 24 39 chr9 66908334 66908542 -57167630 - ID_B1 SINE B4 -11 213 9 8 1095 210 45 22 43 chr9 66908620 66908666 -57167506 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 8 1095 33 0 0 0 chr9 66908669 66908702 -57167470 + AT_rich Low_complexity Low_complexity 1 33 0 8 1095 699 163 15 52 chr9 66908702 66908838 -57167334 - B1_Mur3 SINE Alu -2 147 17 8 1095 668 95 46 28 chr9 66909186 66909294 -57166878 - B1_Mur2 SINE Alu 0 149 40 8 1095 22 99 0 0 chr9 66909300 66909371 -57166801 + GC_rich Low_complexity Low_complexity 1 71 0 8 1095 26 64 0 0 chr9 66909452 66909499 -57166673 + AT_rich Low_complexity Low_complexity 1 47 0 8 1095 325 219 73 0 chr9 66910006 66910088 -57166084 - L1MC4a LINE L1 -1192 6690 6603 8 1095 480 324 0 0 chr9 66910543 66910783 -57165389 + (CGG)n Simple_repeat Simple_repeat 1 240 0 8 1095 459 143 0 35 chr9 66910797 66910884 -57165288 + B1_Mus2 SINE Alu 42 125 -22 8 1095 373 250 0 0 chr9 66911929 66912001 -57164171 + MIRc SINE MIR 78 149 -119 8 1095 351 0 0 0 chr9 66912001 66912040 -57164132 + (TAA)n Simple_repeat Simple_repeat 3 41 0 8 1095 799 167 0 14 chr9 66912320 66912466 -57163706 + B1_Mm SINE Alu 4 147 0 8 1095 759 181 0 0 chr9 66912503 66912663 -57163509 + (TG)n Simple_repeat Simple_repeat 1 160 0 8 1095 762 214 12 35 chr9 66912670 66912855 -57163317 - B3A SINE B2 -12 204 28 8 1095 783 82 0 26 chr9 66912884 66912997 -57163175 - B1_Mus1 SINE Alu -1 147 38 8 1095 247 283 129 23 chr9 66913019 66913236 -57162936 - L1ME3A LINE L1 -4 6169 5930 8 1095 309 51 0 0 chr9 66914028 66914067 -57162105 + (TC)n Simple_repeat Simple_repeat 1 39 0 8 1095 810 219 96 5 chr9 66914328 66914525 -57161647 - ID_B1 SINE B4 -9 215 1 8 1095 261 0 0 0 chr9 66915398 66915427 -57160745 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1095 232 311 0 13 chr9 66915574 66915649 -57160523 + MIRb SINE MIR 115 188 -80 8 1095 765 199 210 0 chr9 66915713 66915889 -57160283 - ID_B1 SINE B4 -4 220 8 8 1095 2288 99 3 58 chr9 66915913 66916256 -57159916 + ORR1A2 LTR MaLR 1 324 -3 8 1095 21 0 0 0 chr9 66916324 66916345 -57159827 + AT_rich Low_complexity Low_complexity 1 21 0 8 1095 910 247 88 8 chr9 66916450 66916711 -57159461 - B4A SINE B4 -10 282 1 8 1095 193 308 60 30 chr9 66917307 66917374 -57158798 + MIRm SINE MIR 208 276 0 8 1095 207 204 0 0 chr9 66917535 66917579 -57158593 + T-rich Low_complexity Low_complexity 1 44 0 8 1095 772 194 8 0 chr9 66917584 66917718 -57158454 - B1_Mus2 SINE Alu -7 140 6 8 1095 895 236 62 0 chr9 66918049 66918257 -57157915 - ID_B1 SINE B4 -2 222 2 8 1095 310 257 313 34 chr9 66918258 66918520 -57157652 + Arthur1 DNA Tip100 2343 2677 -1270 8 1095 21 0 0 0 chr9 66918537 66918558 -57157614 + AT_rich Low_complexity Low_complexity 1 21 0 8 1095 349 183 0 78 chr9 66918585 66918662 -57157510 - RSINE1 SINE B4 0 165 95 8 1095 371 255 106 83 chr9 66918689 66918801 -57157371 + Arthur1 DNA Tip100 2976 3073 -874 8 1095 647 198 0 0 chr9 66918801 66918912 -57157260 - PB1D9 SINE Alu -9 111 1 8 1095 371 255 106 83 chr9 66918912 66919017 -57157155 + Arthur1 DNA Tip100 3074 3197 -750 8 1095 229 299 84 60 chr9 66919674 66919828 -57156344 + MIR3 SINE MIR 12 166 -42 8 1095 1288 84 39 6 chr9 66919842 66920022 -57156150 - B2_Mm2 SINE B2 -8 187 2 8 1095 462 289 96 0 chr9 66920078 66920213 -57155959 - RSINE1 SINE B4 -13 152 5 8 1095 426 193 53 212 chr9 66920289 66920440 -57155732 - B1_Mur4 SINE Alu 0 150 24 8 1095 1209 106 141 5 chr9 66920440 66920639 -57155533 - URR1A DNA MER1_type 0 226 1 9 1095 285 192 86 37 chr9 66920639 66920660 -57155512 - PB1D7 SINE Alu -98 22 4 9 1095 991 285 86 14 chr9 66920668 66921017 -57155155 - MTEa LTR MaLR -5 374 1 9 1095 2253 162 27 29 chr9 66921362 66921770 -57154402 + MTB_Mm LTR MaLR 1 407 0 9 1095 1582 228 56 93 chr9 66922073 66922554 -57153618 + RLTR20B1 LTR ERVK 1 471 -92 9 1095 369 0 0 0 chr9 66922554 66922595 -57153577 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1095 1582 228 56 93 chr9 66922595 66922680 -57153492 + RLTR20B1 LTR ERVK 472 546 -17 9 1095 325 352 91 46 chr9 66922693 66922787 -57153385 - MLT1A0 LTR MaLR -77 288 181 9 1095 516 261 20 34 chr9 66922787 66922934 -57153238 + B1F SINE Alu 5 149 0 9 1095 325 352 91 46 chr9 66922934 66922950 -57153222 - MLT1A0 LTR MaLR -185 180 167 9 1095 198 0 0 0 chr9 66922950 66922972 -57153200 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1095 325 352 91 46 chr9 66922972 66923101 -57153071 - MLT1A0 LTR MaLR -199 166 37 9 1095 668 288 59 87 chr9 66923288 66923488 -57152684 - Zaphod DNA Tip100 -3154 877 675 9 1095 1045 178 66 0 chr9 66923488 66923685 -57152487 + B3 SINE B2 1 210 -6 9 1095 668 288 59 87 chr9 66923685 66923956 -57152216 - Zaphod DNA Tip100 -3357 674 419 9 1095 3123 63 0 17 chr9 66923998 66924296 -57151876 + MTA_Mm LTR MaLR 1 294 -102 9 1095 2914 32 9 6 chr9 66924296 66924641 -57151531 + ORR1A1 LTR MaLR 1 346 0 9 1095 3123 63 0 17 chr9 66924641 66924745 -57151427 + MTA_Mm LTR MaLR 295 396 0 9 1095 471 35 0 0 chr9 66924761 66924818 -57151354 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1095 737 175 72 14 chr9 66924821 66924960 -57151212 - B1_Mur4 SINE Alu -1 149 3 9 1095 239 314 97 37 chr9 66924983 66925161 -57151011 - B3A SINE B2 -1 197 1 9 1095 669 310 17 6 chr9 66925204 66925379 -57150793 - Zaphod DNA Tip100 -3715 316 140 9 1095 431 238 7 80 chr9 66926574 66926589 -57149583 + ID_B1 SINE B4 73 198 -25 9 1095 730 160 8 16 chr9 66926589 66926710 -57149462 + B1_Mur3 SINE Alu 1 120 -29 9 1095 612 316 71 0 chr9 66926732 66926887 -57149285 - ID_B1 SINE B4 -58 166 1 9 1095 484 282 87 55 chr9 66926934 66927152 -57149020 + MLT1F LTR MaLR 30 254 -294 9 1095 1217 218 33 37 chr9 66927463 66927706 -57148466 - MTE2b LTR MaLR -100 279 38 9 1095 375 259 25 0 chr9 66927682 66927763 -57148409 - MTE2b LTR MaLR -279 100 18 9 1095 271 289 67 0 chr9 66927684 66927774 -57148398 - MT2A LTR ERVL -435 98 3 9 1095 537 16 0 0 chr9 66928744 66928806 -57147366 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 1095 934 243 63 0 chr9 66928815 66929004 -57147168 - ID_B1 SINE B4 -23 201 1 9 1095 271 264 107 72 chr9 66929007 66929210 -57146962 - MIRc SINE MIR -44 224 18 9 1095 387 0 0 0 chr9 66929246 66929289 -57146883 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1095 765 278 124 4 chr9 66930239 66930488 -57145684 + B4 SINE B4 1 279 -13 9 1095 444 19 0 0 chr9 66930854 66930907 -57145265 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 9 1095 472 282 163 16 chr9 66930907 66931086 -57145086 - ID_B1 SINE B4 -12 212 7 9 1095 273 279 114 101 chr9 66931272 66931491 -57144681 + RMER4A LTR ERVK 3 224 -242 9 1095 222 118 0 0 chr9 66932019 66932053 -57144119 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1095 543 254 62 52 chr9 66932053 66932297 -57143875 - L1M4c LINE L1 -4565 1819 1591 9 1095 14543 73 16 6 chr9 66932342 66934996 -57141176 - L1VL2 LINE L1 -626 2989 308 9 1095 787 209 0 0 chr9 66935171 66935310 -57140862 + B3 SINE B2 2 140 -76 9 1095 180 77 0 0 chr9 66936056 66936082 -57140090 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 9 1095 305 210 114 48 chr9 66936130 66936143 -57140029 + RLTR25B LTR ERVK 398 417 -611 9 1095 825 85 14 41 chr9 66936143 66936283 -57139889 + B1_Mus2 SINE Alu 1 148 0 9 1095 408 40 0 0 chr9 66936318 66936368 -57139804 + (TCC)n Simple_repeat Simple_repeat 3 52 0 9 1095 609 286 20 0 chr9 66936621 66936768 -57139404 + RSINE1 SINE B4 3 152 -13 9 1095 27 0 0 0 chr9 66936771 66936798 -57139374 + AT_rich Low_complexity Low_complexity 1 27 0 9 1095 617 180 10 0 chr9 66936805 66936905 -57139267 + B1_Mm SINE Alu 4 104 -43 9 1095 517 338 23 5 chr9 66937395 66937609 -57138563 + ID_B1 SINE B4 3 220 -4 9 1095 878 151 203 16 chr9 66937706 66937888 -57138284 - B3 SINE B2 0 216 1 9 1095 966 222 14 32 chr9 66937914 66938133 -57138039 + B3 SINE B2 1 215 -1 9 1095 627 168 0 0 chr9 66938199 66938342 -57137830 + (TG)n Simple_repeat Simple_repeat 1 143 0 9 1095 357 285 144 13 chr9 66938706 66938859 -57137313 - MIRb SINE MIR -68 200 28 9 1095 240 35 0 0 chr9 66938940 66938969 -57137203 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1095 819 261 96 8 chr9 66939210 66939461 -57136711 - B4A SINE B4 -19 273 1 9 1095 502 295 39 19 chr9 66940370 66940525 -57135647 + B4 SINE B4 1 162 -3 9 1095 397 328 113 17 chr9 66940867 66941106 -57135066 - L1M5 LINE L1 -3197 2949 2688 9 1095 260 205 27 243 chr9 66941111 66941259 -57134913 + L1M2 LINE L1 5711 5826 -474 9 1095 779 169 73 0 chr9 66941265 66941401 -57134771 + B1_Mus1 SINE Alu 1 146 -2 9 1095 202 143 48 0 chr9 66941401 66941443 -57134729 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 9 1095 201 218 0 83 chr9 66941581 66941641 -57134531 + G-rich Low_complexity Low_complexity 4 58 0 9 1095 473 215 65 0 chr9 66941961 66942068 -57134104 - PB1D7 SINE Alu -6 114 1 9 1095 309 311 102 51 chr9 66942086 66942262 -57133910 - L1M5 LINE L1 -3656 2490 2306 9 1095 615 214 33 204 chr9 66942273 66942484 -57133688 - B3 SINE B2 0 216 15 9 1095 569 189 113 8 chr9 66942515 66942648 -57133524 - B1_Mur2 SINE Alu -1 148 2 9 1095 207 0 0 0 chr9 66942699 66942722 -57133450 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1095 784 159 45 0 chr9 66942984 66943116 -57133056 + B1_Mus1 SINE Alu 3 140 -8 9 1095 21 0 0 0 chr9 66943129 66943150 -57133022 + AT_rich Low_complexity Low_complexity 1 21 0 9 1095 668 234 159 52 chr9 66943601 66943853 -57132319 + B4A SINE B4 2 280 -12 9 1095 270 56 0 0 chr9 66943898 66943934 -57132238 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1095 900 214 33 112 chr9 66944528 66944770 -57131402 + B4 SINE B4 3 225 -67 9 1095 407 309 153 8 chr9 66944772 66945020 -57131152 + B4A SINE B4 2 285 -7 9 1095 567 53 0 0 chr9 66945060 66945135 -57131037 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1095 261 339 70 16 chr9 66945458 66945587 -57130585 - B1F2 SINE Alu -5 144 9 9 1095 297 171 12 35 chr9 66945595 66945680 -57130492 + CT-rich Low_complexity Low_complexity 1 83 0 9 1095 790 158 15 0 chr9 66945714 66945847 -57130325 - B1_Mur4 SINE Alu -15 135 1 9 1095 461 274 0 0 chr9 66945848 66945943 -57130229 - B4A SINE B4 -197 95 1 9 1095 1419 207 182 6 chr9 66947591 66947921 -57128251 + MTD LTR MaLR 20 407 -12 9 1095 206 264 19 0 chr9 66948154 66948207 -57127965 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 9 1095 187 394 31 8 chr9 66948696 66948824 -57127348 - MIR SINE MIR -9 253 123 9 1095 870 141 14 40 chr9 66948871 66949019 -57127153 + B1_Mur2 SINE Alu 6 149 0 9 1095 563 40 0 13 chr9 66949033 66949108 -57127064 + (GAGAA)n Simple_repeat Simple_repeat 2 75 0 9 1095 672 250 32 74 chr9 66949128 66949318 -57126854 + B4 SINE B4 54 235 -57 9 1095 204 167 20 20 chr9 66949445 66949494 -57126678 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 9 1095 404 37 19 0 chr9 66949553 66949607 -57126565 + (TC)n Simple_repeat Simple_repeat 2 56 0 9 1095 543 16 0 0 chr9 66949607 66949671 -57126501 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1095 180 179 48 111 chr9 66949763 66949826 -57126346 + L2b LINE L2 3308 3366 -9 9 1095 180 0 0 0 chr9 66950056 66950076 -57126096 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 9 1095 595 300 101 4 chr9 66950134 66950336 -57125836 - ID_B1 SINE B4 -61 231 2 9 1095 240 182 0 22 chr9 66950298 66950343 -57125829 - ZP3AR Satellite Satellite -132 80 37 9 1095 22 0 0 0 chr9 66950343 66950365 -57125807 + AT_rich Low_complexity Low_complexity 1 22 0 9 1095 471 112 0 0 chr9 66950956 66951036 -57125136 + (GA)n Simple_repeat Simple_repeat 2 81 0 9 1095 1669 166 56 122 chr9 66951051 66951477 -57124695 + RMER10B LTR ERVL 1 398 0 9 1095 251 196 0 0 chr9 66951943 66951994 -57124178 + Lx8 LINE L1 7417 7467 -6 9 1095 625 234 66 0 chr9 66952024 66952161 -57124011 + U1 snRNA snRNA 18 163 -2 9 1095 278 301 31 31 chr9 66952590 66952686 -57123486 + MER81 DNA AcHobo 19 114 0 9 1095 225 65 0 0 chr9 66952786 66952817 -57123355 + (TC)n Simple_repeat Simple_repeat 1 31 0 9 1095 435 279 167 23 chr9 66952933 66953065 -57123107 + B3 SINE B2 1 151 -65 9 1095 225 0 0 0 chr9 66953067 66953092 -57123080 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1095 321 272 202 0 chr9 66954070 66954243 -57121929 + ID_B1 SINE B4 2 209 -15 9 1095 472 241 227 0 chr9 66954311 66954452 -57121720 + B3A SINE B2 1 173 -25 9 1095 287 125 84 99 chr9 66954436 66954507 -57121665 - Charlie4a DNA MER1_type -342 166 97 9 1095 922 71 35 12 chr9 66955039 66955211 -57120961 + (TG)n Simple_repeat Simple_repeat 2 177 0 9 1095 351 200 87 78 chr9 66955220 66955323 -57120849 - B4A SINE B4 0 292 189 9 1095 304 286 112 0 chr9 66955334 66955432 -57120740 - B4A SINE B4 -183 109 1 9 1095 526 257 62 14 chr9 66955544 66955690 -57120482 - B4A SINE B4 -139 153 1 9 1095 580 252 21 41 chr9 66956190 66956335 -57119837 - MTEb LTR MaLR 0 379 238 9 1095 949 254 67 96 chr9 66956445 66956881 -57119291 - RMER10A LTR ERVL -19 423 1 9 1095 384 281 21 43 chr9 66956881 66956974 -57119198 - MTEb LTR MaLR -268 91 1 9 1095 270 0 0 0 chr9 66957408 66957438 -57118734 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1095 713 301 67 34 chr9 66957964 66958232 -57117940 - B4 SINE B4 -11 281 5 1 1095 373 274 70 9 chr9 66958249 66958363 -57117809 - PB1 SINE Alu -2 125 5 1 1095 302 349 120 27 chr9 66958517 66958926 -57117246 - L2 LINE L2 -761 2658 2212 1 1095 750 265 141 15 chr9 66959106 66959305 -57116867 + B4 SINE B4 7 230 -62 1 1095 952 136 0 7 chr9 66959310 66959451 -57116721 + B1_Mus2 SINE Alu 6 145 -2 1 1095 851 131 44 0 chr9 66959459 66959596 -57116576 + B2_Mm2 SINE B2 3 145 -50 1 1095 225 132 0 0 chr9 66959602 66959640 -57116532 + (CAT)n Simple_repeat Simple_repeat 1 38 0 1 1095 381 43 0 0 chr9 66959695 66959742 -57116430 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1095 486 284 164 0 chr9 66959746 66959978 -57116194 + MLT1F1 LTR MaLR 288 556 -13 1 1095 440 304 8 0 chr9 66960177 66960302 -57115870 - Charlie13b DNA Charlie -204 308 183 1 1095 770 258 67 5 chr9 66960370 66960580 -57115592 - ID_B1 SINE B4 0 224 2 1 1095 293 299 67 17 chr9 66960650 66960769 -57115403 + L2a LINE L2 3301 3425 -1 1 1095 280 281 271 7 chr9 66961166 66961306 -57114866 - MLT1F LTR MaLR -135 413 237 1 1095 606 212 91 0 chr9 66961415 66961547 -57114625 - RSINE1 SINE B4 -19 146 3 1 1095 727 123 8 15 chr9 66962363 66962495 -57113677 + (TTCC)n Simple_repeat Simple_repeat 2 132 0 1 1095 946 250 28 0 chr9 66962510 66962726 -57113446 - ID_B1 SINE B4 -1 223 2 1 1095 269 241 139 0 chr9 66963019 66963098 -57113074 - Lx8 LINE L1 -3 7470 7381 1 1095 267 300 203 22 chr9 66963208 66963440 -57112732 + B4 SINE B4 4 277 -15 1 1095 338 367 102 42 chr9 66963588 66963824 -57112348 - B4 SINE B4 -42 250 1 1 1095 679 284 49 10 chr9 66964190 66964393 -57111779 - B3 SINE B2 -5 211 1 1 1095 662 263 43 102 chr9 66965223 66965528 -57110644 - B4 SINE B4 -4 288 2 1 1095 349 337 142 19 chr9 66965755 66965967 -57110205 - RMER15 LTR ERVL -13 562 325 1 1095 1991 145 21 54 chr9 66966108 66966532 -57109640 - RMER17C LTR ERVK 0 410 1 1 1095 227 311 14 0 chr9 66966673 66966747 -57109425 - Tigger15a DNA TcMar -176 539 465 1 1095 202 343 0 15 chr9 66967214 66967282 -57108890 - MIRm SINE MIR -202 74 8 1 1095 302 153 57 31 chr9 66967494 66967598 -57108574 - B1F SINE Alu 0 127 13 1 1095 228 196 98 0 chr9 66967555 66967606 -57108566 - B4A SINE B4 -150 142 87 1 1095 903 183 83 12 chr9 66968429 66968616 -57107556 - B3 SINE B2 0 216 17 1 1095 256 261 11 11 chr9 66968790 66968883 -57107289 + CT-rich Low_complexity Low_complexity 2 94 0 1 1095 459 0 0 0 chr9 66969182 66969233 -57106939 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1095 575 247 171 48 chr9 66969248 66969435 -57106737 + ID_B1 SINE B4 9 218 -6 1 1095 333 68 0 0 chr9 66969726 66969770 -57106402 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1095 940 236 31 31 chr9 66970373 66970596 -57105576 + MTE2b LTR MaLR 3 225 -154 1 1095 197 42 0 78 chr9 66970599 66970650 -57105522 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1095 366 38 0 54 chr9 66970657 66970713 -57105459 - B1_Mus1 SINE Alu -94 54 2 1 1095 416 244 20 65 chr9 66970713 66970832 -57105340 + MTE2b LTR MaLR 177 344 -35 1 1095 278 266 0 16 chr9 66970896 66971145 -57105027 + (TG)n Simple_repeat Simple_repeat 1 244 0 1 1095 569 253 88 80 chr9 66971145 66971394 -57104778 - B4 SINE B4 0 292 42 1 1095 644 261 19 210 chr9 66972372 66972515 -57103657 + ID_B1 SINE B4 11 146 -78 1 1095 333 0 0 0 chr9 66972515 66972552 -57103620 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1095 644 261 19 210 chr9 66972552 66972670 -57103502 + ID_B1 SINE B4 147 222 -2 1 1095 366 188 100 0 chr9 66972682 66972762 -57103410 + B1_Mur4 SINE Alu 34 121 -29 1 1095 1348 179 18 0 chr9 66973190 66973419 -57102753 + B4A SINE B4 2 234 -58 1 1095 272 140 40 0 chr9 66973420 66973470 -57102702 + PB1D9 SINE Alu 6 57 -63 1 1095 791 225 33 34 chr9 66973475 66973757 -57102415 - RLTR11B LTR ERVK -14 514 236 1 1095 1183 81 6 6 chr9 66973769 66973943 -57102229 + (TTC)n Simple_repeat Simple_repeat 2 175 0 1 1095 509 0 16 0 chr9 66973943 66974004 -57102168 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1095 24 53 0 0 chr9 66974388 66974426 -57101746 + AT_rich Low_complexity Low_complexity 1 38 0 1 1095 24 53 0 0 chr9 66974457 66974495 -57101677 + AT_rich Low_complexity Low_complexity 1 38 0 1 1095 341 261 11 0 chr9 66975195 66975283 -57100889 + PB1D10 SINE Alu 27 115 -2 1 1095 6677 67 30 6 chr9 66975427 66977077 -57099095 - L1VL2 LINE L1 -1789 1826 136 1 1095 252 158 0 0 chr9 66977175 66977232 -57098940 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1095 279 289 26 0 chr9 66977233 66977309 -57098863 - B4 SINE B4 0 292 215 1 1095 366 319 63 28 chr9 66977331 66977473 -57098699 - B1_Mus2 SINE Alu 0 147 1 1 1095 936 213 60 37 chr9 66977473 66977565 -57098607 - B4 SINE B4 -195 97 1 1 1096 448 208 83 15 chr9 66977964 66978096 -57098076 + B1F SINE Alu 1 141 -8 1 1096 308 280 0 0 chr9 66978113 66978188 -57097984 + ID4_ SINE ID 3 77 -6 1 1096 354 143 0 0 chr9 66978207 66978270 -57097902 + (TATG)n Simple_repeat Simple_repeat 1 63 0 1 1096 225 83 0 0 chr9 66979482 66979518 -57096654 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1 1096 396 316 38 112 chr9 66979542 66979565 -57096607 - B4 SINE B4 -47 245 175 1 1096 848 158 0 48 chr9 66979565 66979711 -57096461 - B1_Mus2 SINE Alu -1 146 8 1 1096 396 316 38 112 chr9 66979711 66979746 -57096426 - B4 SINE B4 -47 174 57 1 1096 392 55 0 18 chr9 66980000 66980056 -57096116 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 1 1096 237 324 0 27 chr9 66980060 66980133 -57096039 + C-rich Low_complexity Low_complexity 5 75 0 1 1096 2374 159 44 12 chr9 66981162 66981570 -57094602 + MTC LTR MaLR 1 421 0 1 1096 1157 173 111 17 chr9 66981775 66982110 -57094062 + MTD LTR MaLR 1 419 0 1 1096 315 71 0 0 chr9 66982742 66982784 -57093388 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1096 881 192 96 0 chr9 66983030 66983207 -57092965 - B3 SINE B2 -11 205 12 1 1096 348 261 148 56 chr9 66983222 66983364 -57092808 - B4A SINE B4 -137 155 1 1 1096 1492 220 116 27 chr9 66983420 66983860 -57092312 + Lx8 LINE L1 6989 7467 -6 1 1096 560 278 13 19 chr9 66984062 66984220 -57091952 - RSINE1 SINE B4 -4 161 5 1 1096 238 277 141 20 chr9 66984222 66984421 -57091751 - L2a LINE L2 -251 3175 2953 1 1096 223 301 60 0 chr9 66984681 66984764 -57091408 + L2b LINE L2 3049 3136 -239 1 1096 445 247 0 11 chr9 66985954 66986048 -57090124 + PB1D7 SINE Alu 27 119 -1 1 1096 339 119 0 0 chr9 66986049 66986116 -57090056 + (A)n Simple_repeat Simple_repeat 1 67 0 1 1096 743 158 63 0 chr9 66986118 66986245 -57089927 + B3 SINE B2 2 136 -80 1 1096 261 98 0 0 chr9 66986247 66986288 -57089884 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1096 198 0 0 0 chr9 66986288 66986309 -57089863 + (CG)n Simple_repeat Simple_repeat 1 22 0 1 1096 297 0 0 0 chr9 66986309 66986341 -57089831 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1096 3000 112 22 140 chr9 66987281 66987907 -57088265 + L1Md_F2 LINE L1 6084 6626 -432 1 1096 495 208 0 0 chr9 66988598 66988723 -57087449 + (TG)n Simple_repeat Simple_repeat 2 126 0 1 1096 763 300 48 13 chr9 66988863 66989093 -57087079 - B4 SINE B4 0 292 55 1 1096 1268 94 12 0 chr9 66989078 66989249 -57086923 + B2_Mm1t SINE B2 7 179 -14 1 1096 387 165 197 8 chr9 66989315 66989437 -57086735 + B2_Mm2 SINE B2 47 191 -4 1 1096 1620 57 0 0 chr9 66989442 66989634 -57086538 + B2_Mm1a SINE B2 2 193 0 1 1096 271 231 0 15 chr9 66989925 66989991 -57086181 - L1ME1 LINE L1 -189 5990 5926 1 1096 246 167 0 0 chr9 66990001 66990041 -57086131 - MTEb LTR MaLR -1 378 339 1 1096 1163 239 180 68 chr9 66990041 66990396 -57085776 + MTD LTR MaLR 1 395 -5 1 1096 2117 54 0 0 chr9 66990396 66990657 -57085515 - L1Md_F2 LINE L1 -620 5962 5702 1 1096 4600 61 2 10 chr9 66990668 66991251 -57084921 + L1Md_F2 LINE L1 6005 6582 0 1 1096 940 223 149 16 chr9 66991285 66991527 -57084645 - MTEb LTR MaLR -82 297 24 1 1096 345 341 71 24 chr9 66991688 66991856 -57084316 - LTR33 LTR ERVL -298 217 42 1 1096 337 304 108 29 chr9 66992660 66992799 -57083373 - RMER20B LTR ERVK -354 273 124 1 1096 825 268 88 33 chr9 66992948 66993253 -57082919 - RMER5 LTR ERV1 -212 322 1 1 1096 1639 21 0 25 chr9 66993572 66993770 -57082402 + B2_Mm1a SINE B2 1 193 0 1 1096 746 268 28 19 chr9 66995089 66995302 -57080870 + ID_B1 SINE B4 2 216 -8 1 1096 986 293 110 30 chr9 66995552 66996023 -57080149 + Helitron1Nb_Mam RC Helitron 75 583 -533 1 1096 401 279 99 20 chr9 66996437 66996638 -57079534 - L1M4 LINE L1 -1905 4241 4025 1 1096 712 218 133 30 chr9 66996670 66996873 -57079299 - ID_B1 SINE B4 0 224 1 1 1096 668 23 12 0 chr9 66996885 66996971 -57079201 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1096 768 201 89 33 chr9 66997053 66997233 -57078939 - B3 SINE B2 -15 201 12 1 1096 1254 222 59 123 chr9 66997233 66997382 -57078790 + ORR1D2 LTR MaLR 1 142 -228 1 1096 1232 102 16 26 chr9 66997382 66997573 -57078599 + B2_Mm2 SINE B2 1 189 -6 1 1096 1254 222 59 123 chr9 66997573 66997814 -57078358 + ORR1D2 LTR MaLR 143 366 -4 1 1096 444 235 112 77 chr9 66997814 66997831 -57078341 - B3A SINE B2 -179 19 4 1 1096 28 0 0 0 chr9 66997836 66997864 -57078308 + AT_rich Low_complexity Low_complexity 1 28 0 1 1096 748 242 80 8 chr9 66997926 66998176 -57077996 - L1M4 LINE L1 -2372 3774 3507 1 1096 521 286 37 43 chr9 66998675 66998836 -57077336 + RSINE1 SINE B4 2 161 -4 1 1096 344 77 19 0 chr9 66998836 66998888 -57077284 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1 1096 887 152 21 0 chr9 66999599 66999744 -57076428 + B1_Mur2 SINE Alu 1 148 -1 1 1096 214 374 109 31 chr9 67001642 67001734 -57074438 + MIRb SINE MIR 55 158 -110 1 1096 1011 216 72 32 chr9 67001734 67001804 -57074368 - B4A SINE B4 -2 290 225 2 1096 198 0 0 0 chr9 67001804 67001826 -57074346 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1096 1011 216 72 32 chr9 67001826 67002033 -57074139 - B4A SINE B4 -68 224 4 2 1096 214 374 109 31 chr9 67002033 67002133 -57074039 + MIRb SINE MIR 159 262 -6 1 1096 483 269 40 72 chr9 67002172 67002623 -57073549 - Lx7 LINE L1 0 7696 7147 4 1096 183 80 0 0 chr9 67002741 67002766 -57073406 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1096 363 96 0 0 chr9 67002784 67002836 -57073336 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1096 659 180 70 8 chr9 67003075 67003204 -57072968 - B1_Mus1 SINE Alu 0 148 12 7 1096 264 314 93 73 chr9 67003204 67003226 -57072946 - B4 SINE B4 -69 223 70 8 1096 281 118 0 19 chr9 67003408 67003460 -57072712 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1096 258 285 188 100 chr9 67003482 67003743 -57072429 - B4A SINE B4 -8 284 1 1 1096 987 34 0 0 chr9 67003759 67003877 -57072295 + B1_Mus1 SINE Alu 26 143 -5 1 1096 513 275 37 118 chr9 67003955 67004236 -57071936 + LTR37B LTR ERV1 173 430 -38 1 1096 924 149 14 0 chr9 67004236 67004384 -57071788 - B1_Mur4 SINE Alu 0 150 1 1 1096 513 275 37 118 chr9 67004384 67004424 -57071748 + LTR37B LTR ERV1 431 468 0 1 1096 2257 104 46 0 chr9 67005082 67005410 -57070762 + RMER4A LTR ERVK 1 343 -123 1 1096 747 33 0 0 chr9 67005411 67005501 -57070671 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1096 243 350 139 0 chr9 67005768 67005905 -57070267 + MIR SINE MIR 86 241 -21 1 1096 22 35 0 0 chr9 67005989 67006018 -57070154 + AT_rich Low_complexity Low_complexity 1 29 0 1 1096 515 299 182 16 chr9 67006036 67006223 -57069949 + MER44D DNA MER2_type 22 239 -466 1 1096 1254 212 49 20 chr9 67006654 67007089 -57069083 - RLTR11A2 LTR ERVK 0 527 7 1 1096 3265 53 179 2 chr9 67007642 67008077 -57068095 - RLTR1B LTR ERV1 0 512 1 2 1096 39 0 0 0 chr9 67008133 67008172 -57068000 + AT_rich Low_complexity Low_complexity 1 39 0 2 1096 492 18 0 0 chr9 67008663 67008720 -57067452 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1096 1010 273 67 4 chr9 67009494 67009748 -57066424 + B4A SINE B4 3 272 -20 2 1096 674 212 20 152 chr9 67010682 67010932 -57065240 + B4 SINE B4 7 223 -69 2 1096 981 104 0 20 chr9 67010786 67010933 -57065239 + B1_Mur4 SINE Alu 6 149 -1 2 1096 180 77 0 0 chr9 67010964 67010990 -57065182 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 1096 366 270 57 61 chr9 67011002 67011217 -57064955 + RSINE1 SINE B4 84 275 -17 2 1096 210 118 0 0 chr9 67011221 67011255 -57064917 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1096 347 186 83 102 chr9 67011273 67011381 -57064791 + MT2B LTR ERVL 152 257 -344 2 1096 920 132 0 0 chr9 67011290 67011426 -57064746 + B1_Mur2 SINE Alu 14 149 0 3 1096 287 340 102 90 chr9 67012114 67012369 -57063803 + ORR1E LTR MaLR 99 356 -3 3 1096 221 336 125 33 chr9 67012482 67012692 -57063480 - MIRb SINE MIR 0 268 32 3 1096 216 0 0 0 chr9 67012864 67012888 -57063284 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1096 1030 242 54 29 chr9 67012928 67013205 -57062967 + B4A SINE B4 5 288 -4 3 1096 241 319 55 6 chr9 67013249 67013408 -57062764 + MIRm SINE MIR 5 169 -93 3 1096 663 280 20 0 chr9 67013509 67013659 -57062513 + MTE2b LTR MaLR 1 153 -226 3 1096 584 213 95 7 chr9 67013676 67013798 -57062374 + MTE2b LTR MaLR 205 333 -46 3 1096 426 20 0 0 chr9 67013798 67013849 -57062323 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1096 2390 56 3 3 chr9 67013849 67014152 -57062020 + MTB LTR MaLR 98 400 0 3 1096 405 0 0 0 chr9 67014442 67014487 -57061685 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1096 1564 147 148 55 chr9 67014665 67014995 -57061177 + ORR1B2 LTR MaLR 5 365 -2 4 1096 1057 214 0 36 chr9 67015251 67015474 -57060698 - B3 SINE B2 0 216 2 4 1096 1541 197 139 14 chr9 67015479 67015845 -57060327 + MTD LTR MaLR 8 419 0 4 1096 750 78 0 0 chr9 67015877 67015979 -57060193 + (TG)n Simple_repeat Simple_repeat 2 103 0 4 1096 373 270 36 79 chr9 67016305 67016470 -57059702 - RMER15 LTR ERVL -3 572 415 4 1096 4773 130 50 52 chr9 67017233 67018077 -57058095 - RMER21B LTR ERV1 0 842 1 4 1096 262 298 31 31 chr9 67018725 67018822 -57057350 + LTR16E2 LTR ERVL 466 562 -6 4 1096 478 333 43 19 chr9 67018954 67019162 -57057010 - RMER15-int LTR ERVL -3352 1647 1435 4 1096 517 189 5 214 chr9 67019368 67019507 -57056665 + B3 SINE B2 92 216 0 4 1096 878 236 32 18 chr9 67019641 67019861 -57056311 + ID_B1 SINE B4 1 223 -1 4 1096 620 308 65 60 chr9 67019975 67020447 -57055725 - L1MA5 LINE L1 -5 6295 5820 4 1096 436 217 14 0 chr9 67020497 67020635 -57055537 + (TG)n Simple_repeat Simple_repeat 1 140 0 5 1096 667 300 31 28 chr9 67020635 67020926 -57055246 - B4A SINE B4 0 292 1 5 1096 387 214 70 20 chr9 67020954 67021054 -57055118 - L1MA5 LINE L1 -485 5815 5711 4 1096 328 261 14 0 chr9 67021062 67021131 -57055041 - Tigger5 DNA MER2_type -2336 70 1 5 1096 372 270 50 0 chr9 67021304 67021404 -57054768 - PB1D10 SINE Alu -9 108 4 5 1096 720 266 43 19 chr9 67021728 67021939 -57054233 + B3 SINE B2 1 216 0 5 1096 269 100 20 0 chr9 67022218 67022268 -57053904 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1096 339 25 0 0 chr9 67022268 67022307 -57053865 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1096 262 289 64 57 chr9 67023356 67023493 -57052679 - MIRm SINE MIR -75 193 65 5 1096 342 0 0 0 chr9 67024423 67024461 -57051711 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1096 222 265 0 0 chr9 67025063 67025112 -57051060 - L2b LINE L2 -219 3156 3108 5 1096 741 304 24 37 chr9 67025124 67025370 -57050802 + B4 SINE B4 2 244 -48 6 1096 1216 199 204 20 chr9 67025632 67025976 -57050196 - MTD LTR MaLR 0 419 13 6 1096 325 280 55 27 chr9 67027341 67027451 -57048721 + MT2B LTR ERVL 155 267 -334 6 1096 592 194 108 0 chr9 67027355 67027484 -57048688 + B1_Mur3 SINE Alu 7 149 0 6 1096 928 143 0 7 chr9 67027647 67027788 -57048384 + B1_Mus2 SINE Alu 1 140 -7 6 1096 224 287 52 61 chr9 67027913 67028028 -57048144 + MIRb SINE MIR 113 226 -42 6 1096 1657 126 98 35 chr9 67028343 67028681 -57047491 + ORR1B2 LTR MaLR 1 359 -8 6 1096 479 258 92 0 chr9 67028681 67028801 -57047371 - ID_B1 SINE B4 -12 212 82 6 1096 432 0 0 0 chr9 67029204 67029252 -57046920 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1096 357 24 0 0 chr9 67029372 67029414 -57046758 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1096 1124 221 74 8 chr9 67029433 67029689 -57046483 - B4A SINE B4 -11 281 9 7 1096 358 320 52 13 chr9 67030294 67030449 -57045723 + RSINE1 SINE B4 4 164 -1 7 1096 1169 81 0 0 chr9 67030643 67030791 -57045381 + B1_Mus1 SINE Alu 1 148 0 7 1096 979 214 13 39 chr9 67030923 67031156 -57045016 + B4 SINE B4 3 229 -63 7 1096 518 220 111 85 chr9 67031163 67031352 -57044820 + B3A SINE B2 4 197 -1 7 1096 362 129 29 0 chr9 67031358 67031428 -57044744 + GA-rich Low_complexity Low_complexity 3 74 0 7 1096 1666 210 96 24 chr9 67031611 67031986 -57044186 - MTD LTR MaLR 0 419 18 7 1096 653 325 48 51 chr9 67032116 67032437 -57043735 + L1ME1 LINE L1 5802 6124 -55 7 1096 1018 210 11 0 chr9 67032457 67032633 -57043539 - B3 SINE B2 0 216 39 7 1096 602 303 11 0 chr9 67032739 67032917 -57043255 + B3A SINE B2 1 180 -18 7 1096 326 326 68 21 chr9 67032985 67033176 -57042996 - L1MEc LINE L1 -5215 1185 986 8 1096 206 32 32 0 chr9 67033411 67033442 -57042730 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 8 1096 766 184 48 0 chr9 67033599 67033746 -57042426 + ID_B1 SINE B4 3 156 -68 8 1096 338 229 104 0 chr9 67033676 67033772 -57042400 + PB1 SINE Alu 6 111 -16 8 1096 182 118 29 0 chr9 67033799 67033833 -57042339 + (GGAGA)n Simple_repeat Simple_repeat 4 38 0 8 1096 619 252 62 43 chr9 67034603 67034814 -57041358 + B3 SINE B2 1 215 -1 8 1096 294 341 92 8 chr9 67035003 67035133 -57041039 + Kanga11a DNA Tc2 19 159 -811 8 1096 1019 307 145 34 chr9 67035146 67035642 -57040530 + Kanga11a DNA Tc2 420 970 0 8 1096 251 300 55 0 chr9 67035844 67035987 -57040185 + L1M5 LINE L1 5469 5660 -504 8 1096 263 93 0 23 chr9 67035989 67036033 -57040139 + (TAA)n Simple_repeat Simple_repeat 1 43 0 8 1096 1031 175 31 10 chr9 67036033 67036229 -57039943 + B3 SINE B2 1 200 -16 8 1096 2391 111 155 24 chr9 67036329 67036755 -57039417 - RLTR45 LTR ERVK 0 482 1 9 1096 618 273 168 10 chr9 67036783 67036979 -57039193 + B4 SINE B4 16 242 -50 9 1096 375 78 0 0 chr9 67036990 67037041 -57039131 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1096 500 214 0 10 chr9 67037082 67037181 -57038991 + RSINE1 SINE B4 38 135 -30 9 1096 270 261 57 0 chr9 67037477 67037565 -57038607 - L1M5 LINE L1 -363 5810 5718 9 1096 676 211 131 6 chr9 67037600 67037776 -57038396 + B3A SINE B2 1 198 0 9 1096 24 0 0 0 chr9 67037779 67037803 -57038369 + AT_rich Low_complexity Low_complexity 1 24 0 9 1096 712 135 122 43 chr9 67037809 67037948 -57038224 + B1_Mur4 SINE Alu 1 150 0 9 1096 460 259 0 9 chr9 67038010 67038123 -57038049 + PB1D10 SINE Alu 1 112 -5 9 1096 1047 228 200 10 chr9 67038620 67038964 -57037208 - MTD LTR MaLR -2 419 4 9 1096 358 328 23 23 chr9 67040298 67040426 -57035746 + MIRb SINE MIR 42 169 -99 1 1096 230 296 141 0 chr9 67040475 67040546 -57035626 + Charlie1b DNA MER1_type 3 83 -440 1 1096 1071 219 24 0 chr9 67040553 67040763 -57035409 + ID_B1 SINE B4 1 215 -9 1 1096 466 241 58 36 chr9 67040639 67040777 -57035395 + B1_Mur4 SINE Alu 10 150 0 1 1096 369 215 0 0 chr9 67040799 67040864 -57035308 + MLT1D LTR MaLR 115 179 -326 1 1096 674 213 29 22 chr9 67040892 67041031 -57035141 - B3A SINE B2 -58 140 1 1 1096 240 244 29 143 chr9 67041245 67041289 -57034883 - B4A SINE B4 -178 114 84 1 1096 255 93 0 0 chr9 67041289 67041332 -57034840 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 1 1096 240 244 29 143 chr9 67041332 67041392 -57034780 - B4A SINE B4 -209 83 22 1 1096 276 281 16 0 chr9 67041336 67041400 -57034772 - ID4 SINE ID -6 77 13 1 1096 314 267 29 29 chr9 67041400 67041504 -57034668 - MLT1D LTR MaLR -375 130 27 1 1096 803 212 50 3 chr9 67041694 67041913 -57034259 + L1MB1 LINE L1 5650 5944 -245 1 1096 459 140 280 0 chr9 67042735 67042828 -57033344 - B1_Mur4 SINE Alu -21 129 11 1 1096 278 284 113 56 chr9 67042750 67042892 -57033280 - MT2B LTR ERVL -344 257 108 1 1096 285 184 20 0 chr9 67042918 67042967 -57033205 - ID4 SINE ID -10 73 24 1 1096 656 44 33 0 chr9 67043011 67043101 -57033071 + (TCCCC)n Simple_repeat Simple_repeat 4 96 0 1 1096 373 202 74 11 chr9 67043113 67043208 -57032964 - PB1D9 SINE Alu -8 112 12 1 1096 227 275 54 11 chr9 67043127 67043219 -57032953 - ID_B1 SINE B4 -48 176 81 1 1096 267 323 43 43 chr9 67043733 67043872 -57032300 + MER5A DNA MER1_type 40 178 -11 1 1096 341 370 90 50 chr9 67043985 67044264 -57031908 + MT2A LTR ERVL 4 293 -240 1 1096 572 264 24 48 chr9 67044276 67044443 -57031729 + RSINE1 SINE B4 3 165 0 1 1096 27 0 0 0 chr9 67044467 67044494 -57031678 + AT_rich Low_complexity Low_complexity 1 27 0 1 1096 1375 82 54 0 chr9 67044888 67045072 -57031100 + B2_Mm2 SINE B2 1 194 -1 1 1096 886 105 75 0 chr9 67045090 67045223 -57030949 + B1_Mus1 SINE Alu 5 147 -1 1 1096 915 170 0 0 chr9 67045245 67045569 -57030603 + (TG)n Simple_repeat Simple_repeat 1 324 0 1 1096 231 208 0 0 chr9 67045657 67045710 -57030462 - Lx8 LINE L1 -2 7471 7419 1 1096 4528 10 2 0 chr9 67046430 67046922 -57029250 + MT2_Mm LTR ERVL 1 493 0 1 1096 48500 15 6 0 chr9 67046922 67052248 -57023924 + MERVL-int LTR ERVL 1 5360 -125 1 1096 403 167 46 35 chr9 67052248 67052335 -57023837 + ORR1A3-int LTR MaLR 553 640 -1323 1 1096 319 0 0 0 chr9 67052335 67052373 -57023799 + MERVL-int LTR ERVL 5448 5485 0 1 1096 3789 14 123 0 chr9 67052373 67052812 -57023360 + MT2_Mm LTR ERVL 1 493 0 1 1096 672 156 201 0 chr9 67053210 67053364 -57022808 - Lx8 LINE L1 -326 7147 6963 1 1096 282 188 0 59 chr9 67053364 67053432 -57022740 - B4A SINE B4 -63 229 166 1 1096 213 43 42 42 chr9 67053441 67053489 -57022683 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 1 1096 394 244 0 0 chr9 67053536 67053614 -57022558 - B4A SINE B4 -212 80 3 1 1096 317 226 24 12 chr9 67054127 67054212 -57021960 + LTR37B LTR ERV1 383 468 0 1 1096 250 292 95 51 chr9 67054296 67054433 -57021739 + MIRb SINE MIR 7 149 -119 1 1096 1028 218 93 109 chr9 67054459 67054931 -57021241 + MT2A LTR ERVL 6 601 0 1 1096 466 255 130 7 chr9 67055783 67055921 -57020251 + RSINE1 SINE B4 4 158 -7 1 1096 773 250 23 6 chr9 67056692 67056865 -57019307 + B3A SINE B2 4 179 -19 1 1096 31 26 0 0 chr9 67056898 67056936 -57019236 + AT_rich Low_complexity Low_complexity 1 38 0 1 1096 242 216 39 0 chr9 67057054 67057105 -57019067 - RSINE1 SINE B4 -5 160 108 1 1096 370 241 91 11 chr9 67057401 67057489 -57018683 - RSINE1 SINE B4 -66 99 5 1 1096 489 110 0 0 chr9 67057510 67057583 -57018589 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1096 853 280 96 32 chr9 67057585 67057836 -57018336 - B4A SINE B4 -12 280 14 1 1096 252 284 0 56 chr9 67057780 67057851 -57018321 - BC1_Mm scRNA scRNA -85 67 1 1 1096 443 256 57 24 chr9 67058073 67058197 -57017975 + RMER5 LTR ERV1 72 199 -335 1 1096 1531 195 91 49 chr9 67058414 67058764 -57017408 + ORR1C1 LTR MaLR 14 378 0 1 1096 465 108 0 0 chr9 67058722 67058787 -57017385 - ORR1B2 LTR MaLR -8 359 295 1 1096 576 90 58 39 chr9 67058785 67058889 -57017283 - ORR1B2 LTR MaLR -260 107 2 1 1096 240 220 0 0 chr9 67058889 67058935 -57017237 + ORR1C1 LTR MaLR 333 378 0 1 1096 489 252 9 18 chr9 67059294 67059407 -57016765 + RMER5 LTR ERV1 391 502 -32 1 1096 2094 201 32 10 chr9 67060146 67060557 -57015615 + MTC LTR MaLR 1 420 -1 1 1096 425 307 20 81 chr9 67062227 67062357 -57013815 + B3A SINE B2 44 165 -33 1 1096 450 0 0 0 chr9 67062357 67062407 -57013765 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1096 425 307 20 81 chr9 67062407 67062425 -57013747 + B3A SINE B2 166 183 -15 1 1096 282 184 175 44 chr9 67062766 67062880 -57013292 + B4 SINE B4 151 279 -13 1 1096 212 253 177 0 chr9 67063017 67063096 -57013076 + MIR SINE MIR 40 132 -130 1 1096 2213 112 6 0 chr9 67063099 67063411 -57012761 - ORR1A3 LTR MaLR -8 318 5 1 1096 351 0 0 0 chr9 67064717 67064756 -57011416 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1096 333 250 15 0 chr9 67065716 67065784 -57010388 - ID2 SINE ID -6 77 9 1 1096 555 252 0 9 chr9 67065792 67065908 -57010264 - PB1D10 SINE Alu -2 115 1 1 1096 306 312 190 25 chr9 67065908 67065953 -57010219 - B4 SINE B4 -184 108 38 1 1096 475 195 81 93 chr9 67067037 67067185 -57008987 + MT2B LTR ERVL 116 264 -320 1 1096 1115 49 0 14 chr9 67067076 67067220 -57008952 + B1_Mus2 SINE Alu 6 147 0 1 1096 1071 189 54 50 chr9 67067704 67067943 -57008229 - ID_B1 SINE B4 -73 219 4 1 1096 215 296 58 74 chr9 67069412 67069440 -57006732 - B2_Mm2 SINE B2 -5 190 50 1 1096 639 253 26 32 chr9 67069440 67069595 -57006577 - RSINE1 SINE B4 0 165 12 1 1096 200 302 0 0 chr9 67070085 67070138 -57006034 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 1 1096 225 196 0 0 chr9 67070138 67070189 -57005983 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 1 1096 796 231 176 35 chr9 67070191 67070447 -57005725 - B4 SINE B4 0 292 1 1 1096 573 322 63 15 chr9 67070447 67070652 -57005520 - MER2 DNA MER2_type -121 224 10 1 1096 240 258 92 77 chr9 67070734 67070864 -57005308 + MER103 DNA DNA 32 163 -3 1 1096 391 123 49 0 chr9 67071047 67071058 -57005114 + (CATA)n Simple_repeat Simple_repeat 2 12 0 1 1096 207 0 0 0 chr9 67071058 67071081 -57005091 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1096 391 123 49 0 chr9 67071081 67071150 -57005022 + (CATA)n Simple_repeat Simple_repeat 1 73 0 1 1096 400 318 176 24 chr9 67071315 67071726 -57004446 + MLT1J LTR MaLR 7 479 -33 1 1096 874 293 67 28 chr9 67072158 67072411 -57003761 - B4 SINE B4 -8 284 22 1 1096 294 346 20 65 chr9 67073007 67073063 -57003109 - B3A SINE B2 -5 193 2 1 1096 658 243 48 7 chr9 67073063 67073208 -57002964 - B4 SINE B4 -140 152 2 1 1096 539 288 42 12 chr9 67073343 67073508 -57002664 - ID_B1 SINE B4 -53 171 2 1 1096 377 214 0 10 chr9 67074038 67074142 -57002030 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 1 1096 854 175 64 19 chr9 67074151 67074308 -57001864 - RSINE1 SINE B4 0 165 2 1 1096 300 119 0 0 chr9 67075798 67075857 -57000315 + (T)n Simple_repeat Simple_repeat 1 59 0 1 1096 1348 79 15 36 chr9 67078110 67078306 -56997866 - B2_Mm1t SINE B2 -1 192 1 1 1096 454 208 119 0 chr9 67079101 67079202 -56996970 + RSINE1 SINE B4 2 114 -51 1 1096 1006 213 72 24 chr9 67079693 67079900 -56996272 + ID_B1 SINE B4 2 218 -6 1 1096 180 0 0 0 chr9 67080260 67080280 -56995892 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1096 234 0 0 0 chr9 67080319 67080345 -56995827 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1096 1205 120 40 6 chr9 67080345 67080521 -56995651 - B2_Mm2 SINE B2 -12 183 2 1 1096 185 100 0 91 chr9 67080533 67080553 -56995619 + T-rich Low_complexity Low_complexity 34 50 0 1 1096 1218 35 0 0 chr9 67080553 67080694 -56995478 - B1_Mus1 SINE Alu -7 141 1 1 1096 185 100 0 91 chr9 67080694 67080728 -56995444 + T-rich Low_complexity Low_complexity 1 33 0 1 1096 383 209 30 0 chr9 67080847 67080914 -56995258 - ID4_ SINE ID -10 73 5 1 1096 713 216 149 21 chr9 67081481 67081675 -56994497 - ID_B1 SINE B4 -4 220 2 1 1096 608 255 92 26 chr9 67081723 67081876 -56994296 - RSINE1 SINE B4 0 165 3 1 1096 1014 199 216 46 chr9 67084014 67084319 -56991853 + ORR1E LTR MaLR 1 357 -2 1 1096 1438 79 16 0 chr9 67085340 67085529 -56990643 - B2_Mm2 SINE B2 -3 192 1 1 1096 29 0 0 0 chr9 67086585 67086614 -56989558 + AT_rich Low_complexity Low_complexity 1 29 0 1 1096 1187 29 14 0 chr9 67086626 67086764 -56989408 - B1_Mur4 SINE Alu -9 141 2 1 1096 313 292 0 14 chr9 67087572 67087645 -56988527 - B4A SINE B4 -2 290 219 1 1096 773 217 37 18 chr9 67087730 67087894 -56988278 - B3A SINE B2 -29 169 3 1 1096 201 39 0 0 chr9 67087927 67087953 -56988219 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1096 535 231 41 16 chr9 67087960 67088083 -56988089 - B4A SINE B4 -164 128 3 1 1096 686 61 234 73 chr9 67088906 67089030 -56987142 - B1_Mm SINE Alu -3 144 1 1 1096 273 84 84 0 chr9 67089126 67089197 -56986975 + GA-rich Low_complexity Low_complexity 2 78 0 1 1096 1258 185 19 0 chr9 67089325 67089530 -56986642 - B3 SINE B2 -7 209 1 1 1096 312 215 77 0 chr9 67089554 67089619 -56986553 - ID4 SINE ID -13 70 1 1 1096 332 291 47 8 chr9 67089630 67089758 -56986414 - B1F1 SINE Alu -1 148 16 1 1096 215 31 31 0 chr9 67089967 67089999 -56986173 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1096 520 214 148 16 chr9 67090763 67090891 -56985281 - B1_Mus2 SINE Alu -1 146 2 1 1096 394 243 0 0 chr9 67090935 67091005 -56985167 - RSINE1 SINE B4 -94 71 2 2 1096 273 353 86 59 chr9 67091307 67091563 -56984609 + MIRb SINE MIR 6 268 0 2 1096 827 279 5 20 chr9 67091885 67091912 -56984260 - B3A SINE B2 0 198 173 2 1096 342 0 0 0 chr9 67091912 67091950 -56984222 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1096 827 279 5 20 chr9 67091950 67092123 -56984049 - B3A SINE B2 -26 172 1 2 1096 180 231 0 0 chr9 67092390 67092442 -56983730 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 2 1096 190 350 60 53 chr9 67092626 67092777 -56983395 + MIRb SINE MIR 79 230 -38 2 1096 494 52 78 0 chr9 67093015 67093092 -56983080 - L1Md_F2 LINE L1 0 6582 6500 2 1096 519 272 56 112 chr9 67093105 67093157 -56983015 + L1MD LINE L1 4031 4075 -2071 2 1096 785 193 146 0 chr9 67093157 67093328 -56982844 + B3A SINE B2 1 196 -2 2 1096 519 276 58 112 chr9 67093328 67093687 -56982485 + L1MD LINE L1 4076 4422 -1724 2 1096 245 275 38 0 chr9 67093657 67093737 -56982435 + L1MB7 LINE L1 6092 6174 -10 2 1096 234 0 0 0 chr9 67093739 67093765 -56982407 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1096 333 273 147 2 chr9 67094055 67094240 -56981932 + L1MD LINE L1 5188 5397 -749 2 1096 346 189 0 32 chr9 67094283 67094376 -56981796 + G-rich Low_complexity Low_complexity 5 94 0 2 1096 923 255 129 14 chr9 67094484 67094834 -56981338 + Lx8 LINE L1 7084 7473 0 2 1096 336 167 66 0 chr9 67094850 67094920 -56981252 + B4A SINE B4 72 145 -147 2 1096 550 149 58 0 chr9 67094867 67094954 -56981218 + PB1D10 SINE Alu 8 99 -18 2 1096 726 231 83 10 chr9 67095922 67096123 -56980049 - B3A SINE B2 -3 213 3 2 1096 604 191 0 0 chr9 67096721 67096815 -56979357 - B1_Mur4 SINE Alu -56 94 1 2 1096 324 0 0 0 chr9 67097212 67097248 -56978924 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1096 414 0 0 0 chr9 67097262 67097308 -56978864 + (CATA)n Simple_repeat Simple_repeat 4 49 0 2 1096 254 333 0 0 chr9 67097661 67097733 -56978439 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1096 916 239 124 45 chr9 67097742 67098009 -56978163 - B4A SINE B4 -1 291 4 2 1096 186 43 0 0 chr9 67098073 67098096 -56978076 + (TCC)n Simple_repeat Simple_repeat 1 23 0 2 1096 254 95 24 0 chr9 67098478 67098520 -56977652 + (GGA)n Simple_repeat Simple_repeat 3 45 0 2 1096 265 274 164 19 chr9 67099342 67099446 -56976726 + PB1 SINE Alu 1 119 -8 2 1096 483 188 208 0 chr9 67099571 67099704 -56976468 + B3 SINE B2 28 193 -5 2 1096 295 300 155 6 chr9 67100057 67100238 -56975934 + L1M5 LINE L1 5505 5712 -412 2 1096 719 260 56 25 chr9 67100250 67100447 -56975725 + ID_B1 SINE B4 20 222 -2 2 1096 1519 38 38 0 chr9 67100721 67100907 -56975265 - B2_Mm1t SINE B2 0 193 1 2 1096 1049 194 39 10 chr9 67101046 67101249 -56974923 + B3 SINE B2 1 209 -7 2 1096 595 278 44 77 chr9 67101250 67101433 -56974739 - B4 SINE B4 -10 282 106 2 1096 404 253 0 0 chr9 67101963 67102042 -56974130 - B4 SINE B4 -210 82 4 2 1096 447 258 9 47 chr9 67102262 67102368 -56973804 - PB1D7 SINE Alu -13 107 6 2 1096 263 207 105 47 chr9 67102644 67102730 -56973442 + MTEb LTR MaLR 1 91 -279 2 1096 303 304 0 80 chr9 67102852 67102977 -56973195 + MTEb LTR MaLR 265 379 0 2 1096 233 294 97 44 chr9 67103052 67103166 -56973006 + MIRc SINE MIR 30 149 -119 2 1096 601 239 355 16 chr9 67103254 67103496 -56972676 + MTEa LTR MaLR 1 324 -55 2 1096 1001 122 13 13 chr9 67104102 67104251 -56971921 - B1_Mur4 SINE Alu -1 149 1 2 1096 678 272 48 45 chr9 67104840 67105129 -56971043 - B4A SINE B4 0 292 3 2 1096 1041 251 19 5 chr9 67105584 67105800 -56970372 + ID_B1 SINE B4 3 221 -3 2 1096 272 316 120 79 chr9 67106933 67107249 -56968923 + L2c LINE L2 3058 3386 -1 2 1096 213 354 34 17 chr9 67107436 67107554 -56968618 + MIRc SINE MIR 127 246 -22 2 1096 330 26 0 0 chr9 67107878 67107917 -56968255 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 1096 218 290 82 55 chr9 67108215 67108288 -56967884 - B4 SINE B4 -214 78 4 2 1097 191 114 29 0 chr9 67108886 67108921 -56967251 + (TTAG)n Simple_repeat Simple_repeat 4 39 0 2 1097 567 0 0 0 chr9 67109541 67109604 -56966568 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1097 308 328 52 0 chr9 67110896 67111012 -56965160 + MIR SINE MIR 8 129 -133 2 1097 231 88 0 0 chr9 67111802 67111836 -56964336 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1097 261 0 0 0 chr9 67111844 67111873 -56964299 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1097 255 329 61 49 chr9 67111881 67112044 -56964128 - B4 SINE B4 -21 271 107 2 1097 345 297 35 48 chr9 67112231 67112376 -56963796 + MTD LTR MaLR 6 148 -271 2 1097 742 196 7 7 chr9 67112368 67112507 -56963665 - B3 SINE B2 -76 140 2 2 1097 923 242 99 39 chr9 67112508 67112792 -56963380 + MTE2a LTR MaLR 79 379 0 2 1097 243 0 0 0 chr9 67112942 67112969 -56963203 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1097 237 409 91 7 chr9 67113800 67113943 -56962229 - MIRb SINE MIR -9 259 105 2 1097 259 169 0 92 chr9 67114141 67114206 -56961966 - B1F SINE Alu -1 148 90 2 1097 207 213 43 0 chr9 67115075 67115122 -56961050 - L2b LINE L2 -2 3373 3325 2 1097 827 250 29 14 chr9 67115368 67115575 -56960597 - ID_B1 SINE B4 -13 211 2 2 1097 181 339 0 18 chr9 67115914 67115971 -56960201 + L2 LINE L2 83 138 -3281 2 1097 412 232 0 12 chr9 67116366 67116449 -56959723 - PB1D10 SINE Alu -9 108 27 2 1097 229 190 153 8 chr9 67116736 67116798 -56959374 + MIR3 SINE MIR 105 172 -96 2 1097 195 204 0 0 chr9 67117757 67117801 -56958371 + CT-rich Low_complexity Low_complexity 4 47 0 2 1097 1161 259 52 0 chr9 67117859 67118129 -56958043 - B4A SINE B4 -8 284 1 2 1097 288 0 0 0 chr9 67118459 67118491 -56957681 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1097 315 146 0 0 chr9 67119128 67119183 -56956989 + (GGA)n Simple_repeat Simple_repeat 3 57 0 2 1097 1406 62 45 0 chr9 67121264 67121443 -56954729 + B2_Mm2 SINE B2 1 187 -8 2 1097 481 305 52 7 chr9 67121455 67121610 -56954562 - RSINE1 SINE B4 -2 163 2 2 1097 407 257 59 0 chr9 67121659 67121760 -56954412 - PB1D10 SINE Alu -10 107 1 2 1097 262 392 52 35 chr9 67123375 67123605 -56952567 - L2c LINE L2 -162 3225 2992 2 1097 1579 201 52 68 chr9 67123896 67124281 -56951891 + MTEa LTR MaLR 1 379 0 2 1097 272 301 157 0 chr9 67126043 67126126 -56950046 + PB1D10 SINE Alu 2 97 -20 2 1097 278 259 34 34 chr9 67126758 67126846 -56949326 + MIR3 SINE MIR 3 90 -118 2 1097 4039 57 10 2 chr9 67127177 67127684 -56948488 + L1_Mus3 LINE L1 6127 6637 -1 2 1097 460 181 12 0 chr9 67127820 67127903 -56948269 + RLTR24 LTR ERV1 1 84 -445 2 1097 3615 123 63 16 chr9 67127912 67128480 -56947692 - Lx LINE L1 -7 6647 6053 2 1097 648 95 84 0 chr9 67128508 67128603 -56947569 - L1_Mur2 LINE L1 -716 5161 5059 2 1097 1601 182 100 74 chr9 67128603 67129061 -56947111 + RLTR24 LTR ERV1 58 527 -2 2 1097 180 273 43 54 chr9 67129949 67130042 -56946130 + L3 LINE CR1 860 951 -3538 2 1097 605 228 253 4 chr9 67130172 67130401 -56945771 - B4A SINE B4 -4 288 3 2 1097 269 238 8 146 chr9 67131094 67131217 -56944955 - B1F1 SINE Alu -43 106 1 2 1097 839 182 105 0 chr9 67131217 67131289 -56944883 - ID_B1 SINE B4 -126 98 8 2 1097 472 282 43 49 chr9 67131545 67131709 -56944463 - RSINE1 SINE B4 0 165 3 2 1097 483 244 97 8 chr9 67131860 67131984 -56944188 + B1F SINE Alu 10 144 -5 2 1097 725 244 55 11 chr9 67132707 67132889 -56943283 + B3A SINE B2 1 190 -8 2 1097 1105 230 131 38 chr9 67132900 67133243 -56942929 + MTD LTR MaLR 10 384 -35 2 1097 388 253 172 33 chr9 67133488 67133668 -56942504 - B3 SINE B2 -7 209 5 2 1097 315 0 0 0 chr9 67133794 67133829 -56942343 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1097 297 243 0 41 chr9 67134943 67135016 -56941156 + ID4 SINE ID 1 70 -13 2 1097 212 173 19 37 chr9 67135020 67135074 -56941098 + (CAAAC)n Simple_repeat Simple_repeat 1 53 0 2 1097 356 257 0 0 chr9 67136093 67136167 -56940005 - B4A SINE B4 -4 288 215 2 1097 961 306 71 4 chr9 67136228 67136481 -56939691 - B4A SINE B4 -18 274 5 2 1097 235 301 96 11 chr9 67136649 67136743 -56939429 - B1_Mur2 SINE Alu -47 102 1 2 1097 635 273 58 13 chr9 67136743 67136820 -56939352 - B4A SINE B4 -207 85 2 2 1097 1486 230 67 20 chr9 67137017 67137359 -56938813 + ORR1E LTR MaLR 2 359 0 2 1097 1200 62 0 0 chr9 67138926 67139072 -56937100 + B1_Mm SINE Alu 2 147 0 2 1097 240 69 16 65 chr9 67139077 67139139 -56937033 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 2 1097 463 238 19 28 chr9 67139334 67139442 -56936730 - PB1D9 SINE Alu -13 107 1 2 1097 488 156 9 0 chr9 67139616 67139725 -56936447 + (TG)n Simple_repeat Simple_repeat 1 110 0 2 1097 408 267 12 100 chr9 67139953 67140176 -56935996 + B4A SINE B4 1 251 -41 2 1097 4131 220 30 56 chr9 67140227 67141153 -56935019 + RMER19B LTR ERVK 1 902 0 2 1097 739 298 91 8 chr9 67142113 67142367 -56933805 - B4A SINE B4 -15 277 3 2 1097 201 364 166 0 chr9 67142783 67142934 -56933238 + MIR SINE MIR 86 261 -1 2 1097 1556 238 80 8 chr9 67142975 67143364 -56932808 - MTD LTR MaLR -2 417 1 2 1097 215 225 0 0 chr9 67144633 67144673 -56931499 + CT-rich Low_complexity Low_complexity 3 42 0 2 1097 342 0 0 0 chr9 67144870 67144908 -56931264 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1097 271 301 80 0 chr9 67144922 67145035 -56931137 + L1ME3A LINE L1 5879 6000 -173 3 1097 274 338 0 35 chr9 67147971 67148115 -56928057 + GA-rich Low_complexity Low_complexity 3 141 0 3 1097 444 233 151 18 chr9 67148371 67148537 -56927635 + MIR SINE MIR 6 193 -69 3 1097 652 238 170 39 chr9 67148998 67149357 -56926815 + RMER10A LTR ERVL 12 417 -25 3 1097 656 271 8 17 chr9 67149687 67149846 -56926326 - B4A SINE B4 -80 144 1 3 1097 859 248 60 11 chr9 67150732 67150997 -56925175 - MER33 DNA MER1_type -41 283 6 3 1097 1475 196 108 28 chr9 67151534 67151922 -56924250 + MTD LTR MaLR 1 419 0 3 1097 1382 218 78 24 chr9 67152161 67152494 -56923678 + MTE2a LTR MaLR 1 351 -28 3 1097 1158 122 0 0 chr9 67153314 67153494 -56922678 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1097 180 111 0 0 chr9 67153502 67153529 -56922643 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 3 1097 754 226 138 5 chr9 67155217 67155413 -56920759 + ID_B1 SINE B4 3 224 0 3 1097 187 277 62 0 chr9 67156031 67156096 -56920076 + MER5A DNA MER1_type 1 69 -120 3 1097 1390 252 81 0 chr9 67156316 67156661 -56919511 + MTEa LTR MaLR 3 375 -4 3 1097 1450 60 5 21 chr9 67157049 67157237 -56918935 - B2_Mm1a SINE B2 -6 187 3 3 1097 609 156 142 39 chr9 67157286 67157413 -56918759 - B1_Mm SINE Alu -7 140 1 3 1097 1351 258 67 19 chr9 67158176 67158536 -56917636 + MTD LTR MaLR 42 418 -1 3 1097 1008 253 86 15 chr9 67159003 67159272 -56916900 - B4 SINE B4 -4 288 1 3 1097 7894 67 21 1 chr9 67159824 67161001 -56915171 - L1_Mus3 LINE L1 -7 6631 5434 3 1097 421 337 63 16 chr9 67161629 67161882 -56914290 - L1MD LINE L1 -1147 4999 4735 3 1097 542 257 0 0 chr9 67161884 67161993 -56914179 + B3A SINE B2 1 109 -89 3 1097 312 120 0 0 chr9 67162018 67162068 -56914104 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1097 331 241 30 15 chr9 67162108 67162243 -56913929 + L1MA5 LINE L1 6163 6299 -1 3 1097 206 231 105 88 chr9 67162246 67162360 -56913812 - MIRb SINE MIR -117 151 36 3 1097 234 0 0 0 chr9 67163261 67163287 -56912885 + (C)n Simple_repeat Simple_repeat 1 26 0 3 1097 1186 276 95 15 chr9 67163811 67164149 -56912023 + MTE2b LTR MaLR 7 371 -8 3 1097 647 231 0 7 chr9 67164488 67164623 -56911549 + B1_Mur4 SINE Alu 16 149 -1 3 1097 598 319 12 128 chr9 67165274 67165601 -56910571 + B4A SINE B4 1 289 -3 3 1097 387 105 0 0 chr9 67165608 67165665 -56910507 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1097 211 136 23 0 chr9 67166604 67166648 -56909524 + A-rich Low_complexity Low_complexity 5 49 0 3 1097 307 247 85 147 chr9 67167454 67167876 -56908296 + RMER10A LTR ERVL 18 413 -29 3 1097 465 50 0 0 chr9 67167941 67168001 -56908171 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 3 1097 190 388 0 36 chr9 67168050 67168133 -56908039 - MIR SINE MIR -157 105 26 3 1097 3308 90 36 2 chr9 67168417 67168886 -56907286 - L1_Mus3 LINE L1 0 6638 6154 3 1097 418 297 100 14 chr9 67169153 67169293 -56906879 + B4 SINE B4 1 152 -140 3 1097 216 304 179 17 chr9 67170458 67170575 -56905597 + L3 LINE CR1 2245 2380 -2109 3 1097 340 332 97 26 chr9 67171540 67171809 -56904363 - L1ME3 LINE L1 -332 5830 5543 3 1097 396 309 49 49 chr9 67171914 67172057 -56904115 - MTE2a LTR MaLR -115 264 122 3 1097 1138 68 0 26 chr9 67172200 67172351 -56903821 + B1_Mus2 SINE Alu 1 147 0 3 1097 684 278 10 8 chr9 67172368 67172527 -56903645 + B3 SINE B2 27 178 -15 3 1097 244 286 36 0 chr9 67172535 67172591 -56903581 - MTE2a LTR MaLR -314 65 8 3 1097 309 122 20 0 chr9 67173261 67173310 -56902862 - HAL1-3A_ME LINE L1 -836 2022 1973 3 1097 186 115 0 55 chr9 67173329 67173384 -56902788 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1097 540 123 12 43 chr9 67173442 67173604 -56902568 + (TG)n Simple_repeat Simple_repeat 1 157 0 3 1097 851 221 0 30 chr9 67174091 67174259 -56901913 - RSINE1 SINE B4 0 165 3 3 1097 201 214 52 91 chr9 67174609 67174686 -56901486 + L3 LINE CR1 938 1011 -3478 3 1097 268 318 73 130 chr9 67175674 67176031 -56900141 + MTEa LTR MaLR 20 376 -3 3 1097 190 310 114 19 chr9 67176080 67176238 -56899934 + L2 LINE L2 2739 2911 -508 3 1097 373 238 7 7 chr9 67176953 67177097 -56899075 + GA-rich Low_complexity Low_complexity 1 144 0 3 1097 437 152 45 15 chr9 67177164 67177298 -56898874 + GA-rich Low_complexity Low_complexity 2 139 0 3 1097 400 290 234 61 chr9 67177870 67178188 -56897984 + MTEa LTR MaLR 6 378 -1 3 1097 379 232 71 104 chr9 67179306 67179460 -56896712 + RSINE1 SINE B4 12 160 -5 3 1097 261 0 0 0 chr9 67179460 67179489 -56896683 + (CAA)n Simple_repeat Simple_repeat 3 31 0 3 1097 295 301 59 59 chr9 67181266 67181418 -56894754 + ORR1E LTR MaLR 45 196 -163 3 1097 305 305 60 78 chr9 67181577 67181611 -56894561 - B4A SINE B4 -43 249 218 3 1097 248 70 0 23 chr9 67181611 67181655 -56894517 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1097 564 268 13 49 chr9 67181655 67181822 -56894350 - ID_B1 SINE B4 -75 217 53 3 1097 431 183 260 0 chr9 67182234 67182329 -56893843 + ORR1E LTR MaLR 4 125 -234 3 1097 2412 138 36 22 chr9 67182329 67182744 -56893428 - MTC LTR MaLR 0 421 1 3 1097 771 222 35 66 chr9 67182746 67182973 -56893199 + ORR1E LTR MaLR 140 359 0 3 1097 286 241 152 0 chr9 67183027 67183106 -56893066 + B3 SINE B2 52 142 -74 3 1097 360 0 0 0 chr9 67183115 67183155 -56893017 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1097 306 0 0 0 chr9 67183155 67183188 -56892984 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1097 231 36 0 0 chr9 67184248 67184276 -56891896 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1097 22 35 0 0 chr9 67184323 67184352 -56891820 + AT_rich Low_complexity Low_complexity 1 29 0 3 1097 322 254 163 54 chr9 67184381 67184510 -56891662 - B1_Mus2 SINE Alu -4 143 1 3 1097 216 0 0 0 chr9 67184569 67184593 -56891579 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1097 236 163 61 0 chr9 67184625 67184674 -56891498 + GA-rich Low_complexity Low_complexity 4 55 0 3 1097 273 57 0 0 chr9 67184682 67184717 -56891455 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 3 1097 1147 278 95 28 chr9 67185219 67185652 -56890520 + Lx8 LINE L1 7002 7463 -10 3 1097 520 235 61 0 chr9 67188360 67188492 -56887680 - Lx8 LINE L1 -338 7135 6996 3 1097 861 269 59 59 chr9 67188509 67188734 -56887438 + Lx8 LINE L1 7116 7344 -129 3 1097 810 64 0 0 chr9 67188734 67188843 -56887329 + (GGA)n Simple_repeat Simple_repeat 3 111 0 3 1097 861 269 59 59 chr9 67188843 67188973 -56887199 + Lx8 LINE L1 7345 7471 -2 3 1097 222 37 0 0 chr9 67190478 67190505 -56885667 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 1097 863 239 117 0 chr9 67191405 67191649 -56884523 + MTE2b LTR MaLR 84 363 -16 3 1097 203 0 0 36 chr9 67192117 67192145 -56884027 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1097 735 292 9 14 chr9 67192163 67192382 -56883790 - ID_B1 SINE B4 -2 222 5 3 1097 236 308 78 8 chr9 67192579 67192814 -56883358 + L1MC4a LINE L1 7620 7987 -8 3 1097 343 351 102 77 chr9 67192942 67193195 -56882977 + L1ME4a LINE L1 5511 5774 -350 3 1097 226 250 12 36 chr9 67193195 67193278 -56882894 + ID4_ SINE ID 2 82 -1 3 1097 343 351 102 77 chr9 67193278 67193376 -56882796 + L1ME4a LINE L1 5775 5871 -253 3 1097 240 376 72 44 chr9 67194986 67195167 -56881005 + MIRb SINE MIR 1 186 -82 3 1097 759 150 16 40 chr9 67195327 67195452 -56880720 - B1_Mur3 SINE Alu -11 138 17 3 1097 493 250 31 0 chr9 67195578 67195694 -56880478 + B1_Mur2 SINE Alu 17 137 -12 3 1097 327 49 0 0 chr9 67195711 67195752 -56880420 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 3 1097 371 308 119 67 chr9 67196343 67196611 -56879561 + B4A SINE B4 2 283 -9 3 1097 445 215 128 32 chr9 67197143 67197213 -56878959 + ID SINE ID 1 82 -142 3 1097 312 250 172 30 chr9 67197213 67197312 -56878860 + PB1D10 SINE Alu 1 113 -4 3 1097 449 293 52 8 chr9 67197789 67197923 -56878249 + RSINE1 SINE B4 2 141 -24 3 1097 269 26 26 0 chr9 67197940 67197978 -56878194 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1097 687 269 35 103 chr9 67198865 67199176 -56876996 - B4 SINE B4 -2 290 1 3 1097 301 276 101 37 chr9 67199377 67199486 -56876686 + Arthur1B DNA Tip100 293 408 -817 3 1097 2411 157 63 0 chr9 67199671 67200067 -56876105 + MTC LTR MaLR 1 421 0 3 1097 266 257 97 134 chr9 67200226 67200285 -56875887 + Arthur1B DNA Tip100 969 1022 -203 3 1097 730 152 106 50 chr9 67200285 67200465 -56875707 + B2_Mm2 SINE B2 3 192 -3 3 1097 266 257 97 134 chr9 67200465 67200621 -56875551 + Arthur1B DNA Tip100 1023 1176 -49 3 1097 655 297 36 0 chr9 67200624 67200819 -56875353 + ID_B1 SINE B4 4 205 -19 3 1097 606 235 26 13 chr9 67200841 67200992 -56875180 + B3A SINE B2 1 153 -45 3 1097 354 98 0 0 chr9 67200993 67201044 -56875128 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1097 706 235 94 42 chr9 67201633 67201824 -56874348 + B4 SINE B4 92 292 0 3 1097 558 155 0 0 chr9 67203404 67203501 -56872671 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1097 231 143 0 0 chr9 67203519 67203554 -56872618 + RSINE1 SINE B4 4 38 -127 3 1097 22 0 0 0 chr9 67203665 67203687 -56872485 + AT_rich Low_complexity Low_complexity 1 22 0 3 1097 372 22 0 0 chr9 67203706 67203751 -56872421 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1097 747 274 31 26 chr9 67203755 67203950 -56872222 + B4 SINE B4 93 288 -4 3 1097 375 23 0 0 chr9 67204395 67204439 -56871733 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1097 1342 198 168 9 chr9 67204968 67205284 -56870888 + ORR1D1 LTR MaLR 1 366 -8 3 1097 447 336 127 4 chr9 67205292 67205528 -56870644 + Lx8 LINE L1 7031 7295 -178 3 1097 1600 37 16 0 chr9 67205848 67206037 -56870135 - B2_Mm1a SINE B2 -1 192 1 3 1097 5841 188 64 9 chr9 67206932 67208032 -56868140 + Lx5 LINE L1 5873 7032 -18 4 1097 313 310 108 20 chr9 67208284 67208432 -56867740 - MER5A1 DNA MER1_type 0 166 6 4 1097 367 297 28 146 chr9 67208534 67208747 -56867425 + MER5A DNA MER1_type 1 188 -1 4 1097 261 248 99 76 chr9 67208832 67208963 -56867209 - MIRb SINE MIR -111 157 24 4 1097 1091 241 94 50 chr9 67209908 67210270 -56865902 + MTEb LTR MaLR 2 379 0 4 1097 225 0 0 0 chr9 67210667 67210692 -56865480 + (CAGTA)n Simple_repeat Simple_repeat 5 29 0 4 1097 206 282 22 66 chr9 67211010 67211101 -56865071 + L3 LINE CR1 2915 3001 -1488 4 1097 219 36 0 0 chr9 67211137 67211165 -56865007 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1097 1277 305 62 35 chr9 67211428 67212023 -56864149 + Lx8 LINE L1 6861 7471 -2 4 1097 348 24 0 0 chr9 67212624 67212665 -56863507 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1097 634 277 12 6 chr9 67212670 67212830 -56863342 - B3A SINE B2 -37 161 1 4 1097 967 212 29 10 chr9 67213102 67213307 -56862865 - B3 SINE B2 -7 209 1 4 1097 474 253 143 162 chr9 67214269 67214694 -56861478 + MTD LTR MaLR 2 418 -1 4 1097 260 111 22 0 chr9 67215194 67215239 -56860933 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 4 1097 276 278 54 27 chr9 67215239 67215313 -56860859 + RSINE1 SINE B4 51 126 -39 4 1097 253 306 39 31 chr9 67215359 67215487 -56860685 + L1MDa LINE L1 120 248 -6385 4 1097 536 164 130 8 chr9 67215816 67215939 -56860233 + B1_Mur1 SINE Alu 11 148 -1 4 1097 868 241 20 5 chr9 67215953 67216157 -56860015 + B3 SINE B2 3 209 -7 4 1097 473 155 0 0 chr9 67216194 67216280 -56859892 + L1MDa LINE L1 3160 3245 -3286 4 1097 23 33 0 0 chr9 67216476 67216506 -56859666 + AT_rich Low_complexity Low_complexity 1 30 0 4 1097 24 0 0 0 chr9 67216601 67216625 -56859547 + AT_rich Low_complexity Low_complexity 1 24 0 4 1097 302 282 152 8 chr9 67216790 67216922 -56859250 - HAL1 LINE L1 -104 2403 2253 4 1097 878 201 19 6 chr9 67217124 67217284 -56858888 - B3 SINE B2 -6 210 49 4 1097 966 198 162 140 chr9 67217306 67217664 -56858508 + MTD LTR MaLR 14 379 0 4 1097 363 287 49 91 chr9 67217961 67218158 -56858014 - MIRb SINE MIR -67 201 9 4 1097 265 295 63 0 chr9 67219165 67219260 -56856912 - PB1D7 SINE Alu 0 120 20 4 1097 261 0 0 0 chr9 67219492 67219521 -56856651 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1097 200 333 0 12 chr9 67219526 67219608 -56856564 + GA-rich Low_complexity Low_complexity 4 84 0 4 1097 488 262 126 58 chr9 67219898 67220072 -56856100 + B3 SINE B2 7 192 -24 4 1097 2810 127 44 2 chr9 67220258 67220693 -56855479 - L1_Mus4 LINE L1 -213 5670 5218 4 1097 6466 77 43 3 chr9 67220694 67221563 -56854609 + L1_Mus4 LINE L1 5699 6601 -35 4 1097 295 244 0 25 chr9 67221599 67221679 -56854493 + L1MC LINE L1 5710 5787 -2095 4 1097 506 266 80 73 chr9 67221711 67221861 -56854311 + B3A SINE B2 1 151 -47 4 1097 288 0 0 0 chr9 67221889 67221921 -56854251 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1097 243 0 0 0 chr9 67221922 67221949 -56854223 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 4 1097 225 0 0 0 chr9 67222072 67222097 -56854075 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 1097 359 208 78 0 chr9 67222666 67222743 -56853429 + PB1D9 SINE Alu 30 112 -8 4 1097 652 215 12 0 chr9 67222743 67222906 -56853266 + (TAGA)n Simple_repeat Simple_repeat 1 165 0 4 1097 222 208 0 0 chr9 67222938 67222986 -56853186 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 4 1097 313 255 250 35 chr9 67225866 67226126 -56850046 - L1MA9 LINE L1 -38 6274 5959 4 1097 339 96 0 0 chr9 67226141 67226193 -56849979 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 4 1097 230 225 0 0 chr9 67226193 67226233 -56849939 + polypyrimidine Low_complexity Low_complexity 1 40 0 4 1097 250 302 16 0 chr9 67226235 67226298 -56849874 - ID4 SINE ID -13 70 7 4 1097 340 272 22 0 chr9 67226822 67226914 -56849258 + MER5A DNA MER1_type 7 100 -89 4 1097 272 365 61 50 chr9 67227210 67227487 -56848685 - MLT1A0 LTR MaLR -36 329 50 4 1097 268 268 161 47 chr9 67228580 67228729 -56847443 - B4A SINE B4 -117 175 10 4 1097 630 243 73 1 chr9 67228707 67228864 -56847308 - ID_B1 SINE B4 -50 242 78 4 1097 331 256 11 53 chr9 67229096 67229191 -56846981 + B3 SINE B2 1 91 -125 4 1097 612 200 0 0 chr9 67229194 67229324 -56846848 + (TA)n Simple_repeat Simple_repeat 1 130 0 4 1097 252 260 331 0 chr9 67229392 67229513 -56846659 - ID_B1 SINE B4 -62 162 2 4 1097 478 305 61 17 chr9 67229971 67230151 -56846021 + B3A SINE B2 9 196 -2 4 1097 818 179 142 5 chr9 67230307 67230526 -56845646 + Lx9 LINE L1 7385 7633 -11 4 1097 28 29 0 0 chr9 67230526 67230561 -56845611 + AT_rich Low_complexity Low_complexity 1 35 0 4 1097 688 191 246 11 chr9 67230568 67230743 -56845429 - B3 SINE B2 0 216 1 4 1097 453 293 42 28 chr9 67231103 67231247 -56844925 - RSINE1 SINE B4 -16 149 4 4 1097 462 248 116 0 chr9 67231290 67231411 -56844761 - B1F1 SINE Alu -12 137 3 4 1097 31 0 0 0 chr9 67231548 67231579 -56844593 + AT_rich Low_complexity Low_complexity 1 31 0 4 1097 462 91 0 0 chr9 67231743 67231820 -56844352 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1097 829 270 62 4 chr9 67232428 67232703 -56843469 - B4A SINE B4 0 292 2 4 1097 1015 254 86 50 chr9 67235982 67236343 -56839829 - MTE2b LTR MaLR -5 374 1 4 1097 591 275 57 76 chr9 67236848 67236995 -56839177 - RLTR21 LTR ERVK 0 1404 1257 4 1097 180 97 0 0 chr9 67236995 67237026 -56839146 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1097 5849 172 41 35 chr9 67237026 67237084 -56839088 - RLTR21 LTR ERVK -417 1155 1095 4 1097 396 88 0 0 chr9 67237084 67237141 -56839031 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1097 5849 155 39 29 chr9 67237141 67238231 -56837941 - RLTR21 LTR ERVK -478 1094 4 4 1097 407 264 196 17 chr9 67238329 67238564 -56837608 + ORR1E LTR MaLR 42 318 -41 4 1097 588 29 0 0 chr9 67238591 67238661 -56837511 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 4 1097 550 257 54 7 chr9 67238662 67238811 -56837361 - RSINE1 SINE B4 -2 163 8 4 1097 252 0 0 0 chr9 67239209 67239237 -56836935 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1097 264 230 28 74 chr9 67239702 67239810 -56836362 + L1MC5 LINE L1 7163 7265 -696 4 1097 432 0 0 0 chr9 67239834 67239882 -56836290 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1098 181 53 0 73 chr9 67240127 67240168 -56836004 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1098 185 163 20 0 chr9 67240647 67240696 -56835476 + CT-rich Low_complexity Low_complexity 2 51 0 4 1098 540 254 1 8 chr9 67240776 67240923 -56835249 - B1_Mur2 SINE Alu -2 148 2 4 1098 451 309 67 0 chr9 67242793 67242942 -56833230 + RSINE1 SINE B4 3 161 -4 4 1098 23 0 0 0 chr9 67242963 67242986 -56833186 + AT_rich Low_complexity Low_complexity 1 23 0 4 1098 845 267 5 0 chr9 67242989 67243176 -56832996 + B3 SINE B2 1 188 -28 4 1098 378 0 0 0 chr9 67243179 67243221 -56832951 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1098 735 254 115 20 chr9 67244126 67244379 -56831793 - B4 SINE B4 -14 278 2 4 1098 232 304 43 0 chr9 67244661 67244753 -56831419 + B3 SINE B2 121 216 0 4 1098 701 194 15 0 chr9 67245080 67245214 -56830958 - B1_Mur1 SINE Alu -13 136 1 4 1098 1109 103 82 39 chr9 67247929 67248111 -56828061 - B2_Mm2 SINE B2 -5 190 1 4 1098 871 279 167 29 chr9 67249195 67249351 -56826821 - Lx8 LINE L1 -187 7286 7139 4 1098 429 66 0 0 chr9 67249351 67249412 -56826760 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1098 871 279 167 29 chr9 67249412 67249668 -56826504 - Lx8 LINE L1 -335 7138 6819 4 1098 919 145 42 26 chr9 67249922 67250113 -56826059 - B2_Mm2 SINE B2 0 195 2 4 1098 24 32 0 0 chr9 67250144 67250175 -56825997 + AT_rich Low_complexity Low_complexity 1 31 0 4 1098 1147 128 35 35 chr9 67250850 67251076 -56825096 + URR1A DNA MER1_type 1 226 0 4 1098 1286 254 38 46 chr9 67251135 67251507 -56824665 + MTE2b LTR MaLR 3 371 -8 4 1098 1037 228 160 0 chr9 67253004 67253329 -56822843 + MTEa LTR MaLR 3 379 0 4 1098 242 288 0 91 chr9 67253848 67253936 -56822236 - MTEa LTR MaLR -288 91 12 4 1098 1096 217 14 5 chr9 67255457 67255670 -56820502 + B3 SINE B2 2 216 0 4 1098 1418 45 23 0 chr9 67255696 67255872 -56820300 + B2_Mm2 SINE B2 2 181 -14 4 1098 516 341 28 16 chr9 67255988 67256235 -56819937 + Lx8 LINE L1 6980 7229 -244 4 1098 285 29 0 0 chr9 67256413 67256447 -56819725 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 4 1098 357 296 182 11 chr9 67256955 67257135 -56819037 - ID_B1 SINE B4 -12 212 2 4 1098 362 317 66 62 chr9 67257184 67257440 -56818732 + MLT1B LTR MaLR 127 383 -7 4 1098 370 197 17 25 chr9 67258125 67258245 -56817927 + (TA)n Simple_repeat Simple_repeat 1 119 0 4 1098 317 255 51 0 chr9 67259049 67259147 -56817025 + MLT1A0 LTR MaLR 263 365 0 4 1098 574 233 163 36 chr9 67259312 67259508 -56816664 + ID_B1 SINE B4 3 223 -1 4 1098 278 330 89 79 chr9 67260354 67260568 -56815604 - B4A SINE B4 -11 281 66 4 1098 586 264 89 32 chr9 67261102 67261508 -56814664 - L1M4 LINE L1 -606 5583 5123 4 1098 183 42 0 0 chr9 67261599 67261623 -56814549 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 4 1098 405 226 108 0 chr9 67261623 67261725 -56814447 - B1_Mur1 SINE Alu -28 121 9 4 1098 974 126 58 42 chr9 67261894 67262084 -56814088 + B2_Mm2 SINE B2 3 195 0 4 1098 562 283 191 8 chr9 67262112 67262285 -56813887 + B4 SINE B4 2 197 -95 4 1098 261 0 0 0 chr9 67262285 67262314 -56813858 + (CCA)n Simple_repeat Simple_repeat 3 31 0 5 1098 562 283 191 8 chr9 67262314 67262375 -56813797 + B4 SINE B4 198 278 -14 4 1098 837 273 5 28 chr9 67262922 67263137 -56813035 + B4 SINE B4 81 290 -2 5 1098 441 0 0 0 chr9 67264827 67264876 -56811296 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1098 247 324 0 0 chr9 67264928 67264999 -56811173 - RSINE1 SINE B4 -91 74 4 5 1098 272 265 15 0 chr9 67265011 67265079 -56811093 - PB1D10 SINE Alu -20 97 29 5 1098 610 137 133 25 chr9 67265482 67265602 -56810570 + B1_Mm SINE Alu 2 134 -13 5 1098 450 0 0 0 chr9 67265610 67265660 -56810512 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1098 324 0 0 0 chr9 67265668 67265704 -56810468 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1098 1103 256 103 16 chr9 67267046 67267416 -56808756 - MTD LTR MaLR 0 419 18 5 1098 248 217 16 32 chr9 67267433 67267495 -56808677 + RSINE1 SINE B4 20 80 -85 5 1098 244 204 0 0 chr9 67268673 67268722 -56807450 - B3 SINE B2 -6 210 162 5 1098 1087 233 0 5 chr9 67269042 67269258 -56806914 + B3 SINE B2 2 216 0 5 1098 786 267 9 68 chr9 67269423 67269644 -56806528 - B4 SINE B4 -1 291 84 5 1098 555 16 0 0 chr9 67269648 67269712 -56806460 + (TTTCC)n Simple_repeat Simple_repeat 2 65 0 5 1098 501 231 8 64 chr9 67269713 67269838 -56806334 - B1_Mm SINE Alu -12 135 18 5 1098 464 291 55 109 chr9 67269838 67269933 -56806239 - B4 SINE B4 -78 214 7 5 1098 206 57 57 0 chr9 67270041 67270076 -56806096 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 5 1098 864 222 91 0 chr9 67271168 67271366 -56804806 + B3 SINE B2 1 216 0 5 1098 756 209 0 0 chr9 67271374 67271508 -56804664 + B1_Mus2 SINE Alu 1 134 -13 5 1098 228 35 0 0 chr9 67271508 67271537 -56804635 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1098 193 29 29 29 chr9 67271537 67271571 -56804601 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1098 799 156 78 196 chr9 67272731 67272843 -56803329 - URR1A DNA MER1_type 0 226 147 5 1098 1316 72 27 16 chr9 67272843 67273027 -56803145 - B2_Mm2 SINE B2 -7 188 3 5 1098 799 156 78 196 chr9 67273027 67273169 -56803003 - URR1A DNA MER1_type -80 146 2 5 1098 336 237 109 8 chr9 67273390 67273509 -56802663 - MLT1C LTR MaLR -329 138 8 5 1098 389 265 245 31 chr9 67273578 67273839 -56802333 + L1MA5A LINE L1 5562 5878 -419 5 1098 416 268 6 17 chr9 67275207 67275357 -56800815 + B4 SINE B4 8 193 -99 5 1098 196 0 114 0 chr9 67275370 67275414 -56800758 + (GAAA)n Simple_repeat Simple_repeat 3 51 0 5 1098 363 96 0 0 chr9 67275410 67275462 -56800710 + (GGA)n Simple_repeat Simple_repeat 3 54 0 5 1098 579 27 60 26 chr9 67275455 67275571 -56800601 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 5 1098 323 309 0 0 chr9 67275588 67275672 -56800500 + B4 SINE B4 209 292 0 5 1098 296 260 151 26 chr9 67277110 67277294 -56798878 - B4A SINE B4 -78 214 2 5 1098 723 185 6 76 chr9 67277813 67277971 -56798201 + B1_Mur3 SINE Alu 1 147 -2 5 1098 303 360 60 20 chr9 67278023 67278173 -56797999 + RSINE1 SINE B4 4 159 -6 5 1098 1445 225 44 25 chr9 67278818 67279137 -56797035 - MTE2a LTR MaLR -29 350 26 5 1098 228 35 0 0 chr9 67279924 67279953 -56796219 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1098 482 337 75 111 chr9 67280023 67280620 -56795552 - L1ME1 LINE L1 -86 6093 5518 5 1098 554 264 157 0 chr9 67280660 67280838 -56795334 + MTC LTR MaLR 3 208 -213 5 1098 2508 158 17 10 chr9 67280867 67281065 -56795107 + MTC LTR MaLR 1 204 -217 5 1098 315 0 0 0 chr9 67281065 67281100 -56795072 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1098 2508 158 17 10 chr9 67281100 67281311 -56794861 + MTC LTR MaLR 205 413 -8 5 1098 499 267 68 8 chr9 67281330 67281462 -56794710 + MTC LTR MaLR 262 401 -20 5 1098 439 265 89 99 chr9 67281797 67282010 -56794162 + B4A SINE B4 3 219 -73 5 1098 547 255 56 7 chr9 67282010 67282152 -56794020 + B1_Mur1 SINE Alu 1 149 0 5 1098 439 265 89 99 chr9 67282152 67282231 -56793941 + B4A SINE B4 220 291 -1 5 1098 231 36 0 0 chr9 67284200 67284228 -56791944 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1098 314 309 6 32 chr9 67284230 67284387 -56791785 + (CATA)n Simple_repeat Simple_repeat 2 154 0 5 1098 675 256 52 34 chr9 67284407 67284710 -56791462 - MTE2b LTR MaLR -2 377 31 5 1098 795 266 113 0 chr9 67284741 67284963 -56791209 - MER82 DNA MER2_type -356 297 51 5 1098 345 148 0 0 chr9 67284963 67285044 -56791128 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 1098 553 309 47 0 chr9 67285177 67285368 -56790804 + ID_B1 SINE B4 9 208 -16 5 1098 698 292 15 35 chr9 67285483 67285665 -56790507 + B3A SINE B2 1 181 -17 5 1098 222 128 0 0 chr9 67285665 67285704 -56790468 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1098 698 292 15 35 chr9 67285704 67285723 -56790449 + B3A SINE B2 182 198 0 5 1098 1000 219 24 9 chr9 67285744 67285956 -56790216 + B3 SINE B2 2 216 0 5 1098 848 326 45 8 chr9 67285993 67286367 -56789805 + L1MC4 LINE L1 6700 7087 -955 5 1098 378 0 0 0 chr9 67286656 67286698 -56789474 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1098 549 83 0 0 chr9 67286714 67286798 -56789374 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1098 268 224 114 114 chr9 67286802 67286829 -56789343 - B2_Mm1t SINE B2 -61 132 2 5 1098 503 250 19 0 chr9 67286829 67286933 -56789239 - B4A SINE B4 -185 107 2 5 1098 300 258 30 82 chr9 67287302 67287437 -56788735 + MLT1A1 LTR MaLR 281 408 0 5 1098 350 30 39 145 chr9 67287936 67288437 -56787735 + (CCCTG)n Simple_repeat Simple_repeat 1 447 0 5 1098 306 89 34 176 chr9 67288500 67288704 -56787468 + (CCCTG)n Simple_repeat Simple_repeat 5 179 0 5 1098 388 88 35 163 chr9 67288799 67289212 -56786960 + (CCCTG)n Simple_repeat Simple_repeat 1 359 0 5 1098 411 129 43 86 chr9 67289248 67289434 -56786738 + (CCCTG)n Simple_repeat Simple_repeat 1 178 0 5 1098 678 117 11 0 chr9 67289961 67290055 -56786117 - Lx4A LINE L1 -251 6807 6713 5 1098 468 0 0 0 chr9 67290693 67290745 -56785427 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1098 2517 161 65 21 chr9 67291433 67292140 -56784032 - MTC-int LTR MaLR -201 1057 167 5 1098 598 192 116 50 chr9 67292140 67292321 -56783851 - B2_Mm2 SINE B2 0 195 3 5 1098 2130 191 164 11 chr9 67292321 67292478 -56783694 - MTC-int LTR MaLR -1092 166 2 5 1098 2062 171 65 8 chr9 67292477 67292848 -56783324 - MTC LTR MaLR 0 421 30 5 1098 853 236 215 88 chr9 67292975 67293305 -56782867 + MTEa LTR MaLR 3 374 -5 5 1098 626 321 58 43 chr9 67295529 67295585 -56780587 + MER58B DNA MER1_type 78 125 -216 5 1098 1633 32 5 0 chr9 67295585 67295775 -56780397 + B2_Mm1t SINE B2 2 192 -1 5 1098 626 321 58 43 chr9 67295775 67295975 -56780197 + MER58B DNA MER1_type 126 338 -3 5 1098 195 69 0 0 chr9 67296432 67296461 -56779711 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 5 1098 586 260 0 8 chr9 67296818 67296946 -56779226 + B4 SINE B4 158 284 -8 5 1098 317 308 50 32 chr9 67297304 67297525 -56778647 + L1MC4 LINE L1 6802 7026 -1016 5 1098 351 0 0 0 chr9 67297548 67297587 -56778585 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1098 234 0 0 0 chr9 67297587 67297612 -56778560 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1098 373 273 5 43 chr9 67297663 67297823 -56778349 - B4A SINE B4 -8 284 85 5 1098 589 148 0 0 chr9 67297823 67297911 -56778261 + RMER6B LTR ERVK 1 88 -373 5 1098 226 294 214 10 chr9 67297927 67298030 -56778142 - B4A SINE B4 -168 124 1 5 1098 180 0 0 0 chr9 67298745 67298765 -56777407 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 5 1098 227 239 132 15 chr9 67299535 67299603 -56776569 + ID4_ SINE ID 8 83 0 5 1098 264 156 22 0 chr9 67299891 67299936 -56776236 + B4A SINE B4 56 101 -191 5 1098 598 168 0 0 chr9 67299937 67300032 -56776140 + RMER6A LTR ERVK 1 95 -661 5 1098 1506 175 138 32 chr9 67300031 67300379 -56775793 + RMER19C LTR ERVK 227 611 0 5 1098 3424 120 51 23 chr9 67300379 67300969 -56775203 + RMER6A LTR ERVK 150 756 0 5 1098 420 283 168 6 chr9 67300969 67301133 -56775039 + B4 SINE B4 97 287 -5 5 1098 519 298 240 8 chr9 67301400 67301775 -56774397 - L1MA8 LINE L1 -86 6226 5765 5 1098 676 230 39 13 chr9 67301841 67301995 -56774177 + RSINE1 SINE B4 8 165 0 5 1098 226 244 74 37 chr9 67302038 67302119 -56774053 - L1M1 LINE L1 -602 5698 5615 5 1098 243 288 0 29 chr9 67302405 67302473 -56773699 - B2_Mm2 SINE B2 -93 102 37 5 1098 362 337 1 96 chr9 67302656 67302847 -56773325 - B4A SINE B4 -90 202 27 5 1098 311 260 152 23 chr9 67302884 67303061 -56773111 - L1MA8 LINE L1 -961 5179 4980 5 1098 787 288 47 0 chr9 67303201 67303475 -56772697 - L1MA8 LINE L1 -1204 4939 4653 5 1098 189 0 0 0 chr9 67303521 67303542 -56772630 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1098 216 237 16 33 chr9 67303642 67303703 -56772469 - B3 SINE B2 -156 60 1 5 1098 21 0 0 0 chr9 67303863 67303884 -56772288 + AT_rich Low_complexity Low_complexity 1 21 0 5 1098 535 228 24 8 chr9 67304044 67304168 -56772004 - B4A SINE B4 -121 171 46 5 1098 260 314 101 72 chr9 67304426 67304476 -56771696 - B3 SINE B2 0 216 140 5 1098 545 308 44 19 chr9 67304476 67304508 -56771664 - RSINE1 SINE B4 0 165 129 5 1098 495 0 0 0 chr9 67304508 67304563 -56771609 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1098 260 314 101 72 chr9 67304563 67304689 -56771483 - B3 SINE B2 -77 139 2 5 1098 387 41 0 0 chr9 67305987 67306036 -56770136 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1098 715 173 63 0 chr9 67306520 67306647 -56769525 - B1_Mur1 SINE Alu -13 136 2 5 1098 243 312 49 12 chr9 67306897 67306978 -56769194 - MIR SINE MIR -66 142 59 5 1098 756 33 0 0 chr9 67307608 67307699 -56768473 + (TCCC)n Simple_repeat Simple_repeat 2 92 0 5 1098 25 0 0 0 chr9 67308495 67308520 -56767652 + AT_rich Low_complexity Low_complexity 1 25 0 5 1098 643 220 103 141 chr9 67308711 67308856 -56767316 + B3A SINE B2 17 168 -30 5 1098 243 0 0 0 chr9 67308856 67308883 -56767289 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1098 378 220 103 141 chr9 67308883 67308922 -56767250 + B2_Mm2 SINE B2 162 194 -1 5 1098 918 231 14 24 chr9 67309269 67309482 -56766690 - B3 SINE B2 -5 211 1 5 1098 182 213 72 96 chr9 67309917 67310000 -56766172 + L3 LINE CR1 1640 1720 -2769 5 1098 549 30 0 0 chr9 67310272 67310339 -56765833 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1098 1133 248 140 33 chr9 67310412 67310771 -56765401 + MTD LTR MaLR 15 406 -13 6 1098 615 106 52 23 chr9 67310873 67311047 -56765125 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 6 1098 303 49 0 0 chr9 67311052 67311093 -56765079 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 6 1098 252 0 0 0 chr9 67311093 67311121 -56765051 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1098 204 292 111 11 chr9 67311183 67311273 -56764899 + MIRc SINE MIR 44 142 -126 6 1098 354 275 0 24 chr9 67311506 67311588 -56764584 - ID4 SINE ID -2 81 2 6 1098 467 238 48 134 chr9 67312690 67312733 -56763439 + B2_Mm2 SINE B2 2 44 -151 6 1098 432 0 0 0 chr9 67312733 67312781 -56763391 + (TTA)n Simple_repeat Simple_repeat 1 48 0 6 1098 863 75 113 0 chr9 67312782 67312915 -56763257 - L1_Mus3 LINE L1 -17 6621 6474 6 1098 467 238 48 134 chr9 67312915 67313078 -56763094 + B2_Mm2 SINE B2 45 192 -3 6 1098 293 282 0 13 chr9 67313105 67313184 -56762988 + MER103 DNA DNA 16 93 -73 6 1098 636 130 387 42 chr9 67313946 67314114 -56762058 - URR1A DNA MER1_type 0 226 1 6 1098 1514 229 98 19 chr9 67314324 67314703 -56761469 - MTD LTR MaLR -8 411 3 6 1098 2280 179 69 7 chr9 67314888 67315188 -56760984 + RLTR28B LTR ERVL 2 315 -166 6 1098 1200 41 14 0 chr9 67315188 67315326 -56760846 + B1_Mus1 SINE Alu 2 141 -7 6 1098 387 0 0 0 chr9 67315326 67315369 -56760803 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1098 2280 179 69 7 chr9 67315375 67315523 -56760649 + RLTR28B LTR ERVL 316 478 -3 6 1098 714 321 24 36 chr9 67316188 67316518 -56759654 + L1MC1 LINE L1 5879 6204 -129 6 1098 1154 265 240 13 chr9 67317039 67317502 -56758670 + RMER15 LTR ERVL 8 575 0 6 1098 195 42 0 0 chr9 67318042 67318066 -56758106 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1098 21 0 0 0 chr9 67318544 67318565 -56757607 + AT_rich Low_complexity Low_complexity 1 21 0 6 1098 435 38 0 0 chr9 67318568 67318621 -56757551 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1098 441 373 0 0 chr9 67318621 67318782 -56757390 + RSINE1 SINE B4 5 165 0 6 1098 643 308 96 0 chr9 67318907 67319105 -56757067 + B4A SINE B4 71 287 -5 6 1098 356 111 16 0 chr9 67319110 67319173 -56756999 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1098 23 0 0 0 chr9 67319311 67319334 -56756838 + AT_rich Low_complexity Low_complexity 1 23 0 6 1098 632 147 17 0 chr9 67319785 67319901 -56756271 + CT-rich Low_complexity Low_complexity 1 118 0 6 1098 411 235 12 0 chr9 67321279 67321364 -56754808 - ID_B1 SINE B4 -6 218 133 6 1098 626 237 8 0 chr9 67321345 67321463 -56754709 - B1_Mur2 SINE Alu -29 120 2 6 1098 328 286 22 0 chr9 67321464 67321555 -56754617 - HAL1-2a_MD LINE L1 -571 2453 2361 6 1098 1091 255 14 21 chr9 67323624 67323912 -56752260 - B4A SINE B4 -5 287 2 6 1098 454 317 29 52 chr9 67324653 67324826 -56751346 + MER20 DNA MER1_type 49 217 -2 6 1098 1099 263 37 22 chr9 67325018 67325286 -56750886 - B4 SINE B4 -2 290 19 6 1098 237 224 20 0 chr9 67325285 67325334 -56750838 - ID_B1 SINE B4 -51 173 124 6 1098 248 214 89 0 chr9 67327081 67327137 -56749035 + U6 snRNA snRNA 23 83 -24 6 1098 1197 174 301 112 chr9 67327192 67327640 -56748532 + MT2A LTR ERVL 1 533 0 6 1098 881 212 101 0 chr9 67328816 67329005 -56747167 + ID_B1 SINE B4 15 222 -2 6 1098 203 316 124 21 chr9 67329456 67329553 -56746619 - MIRb SINE MIR -81 187 81 6 1098 306 0 0 0 chr9 67331277 67331311 -56744861 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 6 1098 197 271 119 0 chr9 67331343 67331402 -56744770 - L2b LINE L2 -10 3365 3300 6 1098 1226 148 40 48 chr9 67331790 67332017 -56744155 + URR1B DNA MER1_type 1 225 0 6 1098 477 0 0 0 chr9 67332388 67332441 -56743731 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1098 25 0 0 0 chr9 67333561 67333586 -56742586 + AT_rich Low_complexity Low_complexity 1 25 0 6 1098 320 186 0 17 chr9 67333827 67333887 -56742285 + G-rich Low_complexity Low_complexity 5 63 0 6 1098 721 203 10 21 chr9 67334840 67334990 -56741182 - MTD LTR MaLR -241 178 31 6 1098 557 254 121 117 chr9 67335888 67336178 -56739994 + B4A SINE B4 2 292 0 6 1098 180 200 28 14 chr9 67336179 67336250 -56739922 + (CATA)n Simple_repeat Simple_repeat 4 75 0 6 1098 599 250 181 39 chr9 67337262 67337599 -56738573 - MTD LTR MaLR -28 391 7 6 1098 358 291 110 15 chr9 67337596 67337732 -56738440 + MER82 DNA MER2_type 505 653 0 6 1098 268 312 0 13 chr9 67337829 67337907 -56738265 + MER20 DNA MER1_type 7 83 -136 6 1098 851 245 24 19 chr9 67338044 67338256 -56737916 + B3 SINE B2 1 213 -3 6 1098 496 284 72 66 chr9 67338433 67338614 -56737558 + B3A SINE B2 1 182 -16 6 1098 315 0 0 0 chr9 67338617 67338652 -56737520 - HAL1-3A_ME LINE L1 -847 2011 1977 6 1098 429 109 0 0 chr9 67338652 67338716 -56737456 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1098 733 239 55 20 chr9 67338764 67338965 -56737207 + ID_B1 SINE B4 1 208 -16 6 1098 279 0 0 0 chr9 67339372 67339403 -56736769 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1098 2180 147 24 29 chr9 67340846 67341225 -56734947 + ORR1C1 LTR MaLR 1 377 -1 6 1098 252 59 0 0 chr9 67341289 67341323 -56734849 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1098 775 276 58 11 chr9 67341365 67341625 -56734547 - B4A SINE B4 -18 274 3 6 1098 833 264 50 0 chr9 67342613 67342814 -56733358 - ID_B1 SINE B4 -13 211 1 6 1098 541 283 14 112 chr9 67344678 67344883 -56731289 + MTD LTR MaLR 2 181 -219 6 1098 270 148 0 16 chr9 67345010 67345060 -56731112 - MTD LTR MaLR -10 411 367 6 1098 405 291 96 73 chr9 67345479 67345657 -56730515 + B3A SINE B2 1 182 -16 6 1098 602 193 71 81 chr9 67345738 67345935 -56730237 + B2_Mm2 SINE B2 1 195 0 6 1098 300 158 0 0 chr9 67345935 67345992 -56730180 + GA-rich Low_complexity Low_complexity 2 58 0 6 1098 1245 96 0 0 chr9 67345993 67346171 -56730001 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 1098 1148 58 0 0 chr9 67347554 67347692 -56728480 - B1_Mus2 SINE Alu -9 138 1 6 1098 884 129 7 0 chr9 67348069 67348216 -56727956 + (GAGAA)n Simple_repeat Simple_repeat 3 150 0 6 1098 683 232 64 37 chr9 67348396 67348584 -56727588 + MTC LTR MaLR 22 214 -207 6 1098 703 229 83 12 chr9 67348963 67349106 -56727066 + B3 SINE B2 28 183 -33 6 1098 431 35 18 0 chr9 67349106 67349163 -56727009 + (CATA)n Simple_repeat Simple_repeat 1 58 0 6 1098 703 231 58 66 chr9 67349163 67349206 -56726966 + B3 SINE B2 160 207 -9 6 1098 469 301 47 20 chr9 67349476 67349625 -56726547 + MER5B DNA MER1_type 2 154 -24 6 1098 543 247 247 17 chr9 67350042 67350277 -56725895 + B4A SINE B4 2 290 -2 6 1098 248 227 25 62 chr9 67350423 67350503 -56725669 + MER5A1 DNA MER1_type 71 147 -19 6 1098 320 309 0 12 chr9 67350734 67350816 -56725356 + MER21B LTR ERV1 36 116 -747 6 1098 2863 174 34 58 chr9 67350825 67351416 -56724756 + RLTR20A2 LTR ERVK 1 577 -1 6 1098 672 318 240 13 chr9 67351416 67351865 -56724307 + MER21B LTR ERV1 119 673 -190 6 1098 736 230 60 12 chr9 67352077 67352244 -56723928 + B3A SINE B2 9 183 -15 6 1098 513 328 8 0 chr9 67352304 67352438 -56723734 + RSINE1 SINE B4 3 137 -28 6 1098 206 203 46 71 chr9 67352962 67353036 -56723136 - MIRb SINE MIR -161 101 37 6 1098 244 345 58 33 chr9 67353041 67353161 -56723011 + MER5A1 DNA MER1_type 44 166 0 6 1098 297 75 0 0 chr9 67353524 67353564 -56722608 + (TTA)n Simple_repeat Simple_repeat 1 40 0 6 1098 227 178 22 0 chr9 67354696 67354741 -56721431 + B4 SINE B4 2 47 -245 6 1098 206 158 50 23 chr9 67355703 67355774 -56720398 + MIR SINE MIR 86 152 -56 6 1098 443 196 77 0 chr9 67355872 67355976 -56720196 - ID_B1 SINE B4 -166 126 11 6 1098 453 19 0 0 chr9 67356426 67356480 -56719692 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1098 456 67 0 0 chr9 67357198 67357258 -56718914 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1098 1280 27 0 0 chr9 67357757 67357904 -56718268 + B1_Mm SINE Alu 1 147 0 6 1098 374 139 0 14 chr9 67357981 67358054 -56718118 + G-rich Low_complexity Low_complexity 3 74 0 6 1098 523 309 0 0 chr9 67358727 67358850 -56717322 + ORR1E LTR MaLR 6 128 -231 6 1098 291 241 53 114 chr9 67359019 67359150 -56717022 + PB1 SINE Alu 1 123 -4 6 1098 344 266 52 94 chr9 67360255 67360527 -56715645 + ORR1E LTR MaLR 101 371 -8 6 1098 334 317 96 12 chr9 67360590 67360756 -56715416 + MIR SINE MIR 58 237 -25 6 1098 756 269 30 30 chr9 67360899 67361098 -56715074 - B4A SINE B4 -88 204 6 6 1098 1191 62 7 0 chr9 67361247 67361393 -56714779 + B1_Mus1 SINE Alu 2 148 0 6 1098 3371 35 149 0 chr9 67361847 67362276 -56713896 + MT2_Mm LTR ERVL 1 493 0 6 1098 1686 190 79 133 chr9 67362277 67362757 -56713415 + RMER4A LTR ERVK 2 455 -11 6 1098 289 331 72 24 chr9 67362828 67362971 -56713201 + B1F SINE Alu 1 149 0 6 1098 1603 200 72 9 chr9 67363008 67363356 -56712816 - ORR1D2 LTR MaLR 0 370 1 6 1098 354 23 0 0 chr9 67363472 67363515 -56712657 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1098 189 74 0 0 chr9 67363874 67363901 -56712271 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1098 546 208 79 0 chr9 67364070 67364171 -56712001 + RSINE1 SINE B4 18 126 -39 6 1098 878 287 99 0 chr9 67364171 67364443 -56711729 - RMER15 LTR ERVL 0 575 277 6 1098 255 125 50 0 chr9 67364496 67364536 -56711636 - RMER15 LTR ERVL -466 109 68 6 1098 484 306 34 27 chr9 67364552 67364700 -56711472 - B1_Mur1 SINE Alu 0 149 1 6 1098 234 62 0 0 chr9 67364829 67364861 -56711311 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1098 423 56 0 0 chr9 67365903 67365957 -56710215 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1098 573 292 27 0 chr9 67365982 67366129 -56710043 - B4 SINE B4 -139 153 3 7 1098 621 72 0 0 chr9 67366200 67366283 -56709889 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 1098 321 250 0 0 chr9 67367043 67367103 -56709069 + B3A SINE B2 1 60 -138 7 1098 372 272 153 17 chr9 67367733 67367909 -56708263 + B3 SINE B2 4 203 -13 7 1098 558 282 116 24 chr9 67368846 67369050 -56707122 + B4A SINE B4 7 229 -63 7 1098 536 280 40 60 chr9 67369050 67369224 -56706948 + B3A SINE B2 2 179 -19 7 1098 401 0 20 0 chr9 67369224 67369273 -56706899 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1098 536 280 40 60 chr9 67369273 67369299 -56706873 + B3A SINE B2 180 198 0 7 1098 290 362 85 0 chr9 67369711 67369910 -56706262 - MIRb SINE MIR -6 262 47 7 1098 321 179 179 0 chr9 67370893 67370960 -56705212 - RSINE1 SINE B4 -2 163 85 7 1099 1171 62 7 0 chr9 67371119 67371265 -56704907 + B1_Mus1 SINE Alu 2 148 0 7 1099 269 214 36 0 chr9 67371384 67371440 -56704732 - ID_B1 SINE B4 0 224 167 7 1099 243 253 77 88 chr9 67371440 67371474 -56704698 - B1F SINE Alu -1 147 59 7 1099 205 366 7 44 chr9 67372167 67372304 -56703868 + MIR SINE MIR 72 210 -58 7 1099 1035 277 66 42 chr9 67372471 67372803 -56703369 + MTD LTR MaLR 50 389 -30 7 1099 22 0 0 0 chr9 67373142 67373164 -56703008 + AT_rich Low_complexity Low_complexity 1 22 0 7 1099 1978 149 31 87 chr9 67373236 67373626 -56702546 - ORR1C2 LTR MaLR -16 368 1 7 1099 671 164 86 0 chr9 67373739 67373855 -56702317 + B3A SINE B2 20 145 -53 7 1099 1065 123 0 0 chr9 67373856 67374026 -56702146 + (CA)n Simple_repeat Simple_repeat 1 170 0 7 1099 2401 272 68 12 chr9 67374054 67374788 -56701384 + RCHARR1 DNA MER1_type 88 862 -112 7 1099 357 24 0 0 chr9 67374892 67374934 -56701238 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1099 956 228 56 0 chr9 67375011 67375208 -56700964 + B3 SINE B2 1 208 -8 7 1099 363 232 28 92 chr9 67375227 67375336 -56700836 + MT2B LTR ERVL 156 257 -344 7 1099 797 160 8 0 chr9 67375244 67375369 -56700803 + B1_Mus1 SINE Alu 11 136 -12 7 1099 808 121 0 4 chr9 67375424 67375555 -56700617 - Lx4A LINE L1 -719 6257 6127 7 1099 1140 182 24 9 chr9 67376292 67376503 -56699669 + B3 SINE B2 2 215 -1 7 1099 324 272 124 92 chr9 67376526 67376809 -56699363 + B4A SINE B4 1 292 0 7 1099 348 24 0 0 chr9 67377059 67377100 -56699072 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1099 1441 147 5 0 chr9 67378714 67378938 -56697234 + URR1B DNA MER1_type 1 225 0 7 1099 370 286 0 40 chr9 67379141 67379265 -56696907 + PB1D7 SINE Alu 1 119 -1 7 1099 630 201 41 14 chr9 67379338 67379484 -56696688 - B3A SINE B2 -25 173 24 7 1099 772 303 66 72 chr9 67379506 67379990 -56696182 - L1M5 LINE L1 -1158 4988 4508 7 1099 207 139 0 0 chr9 67380388 67380424 -56695748 + (GGA)n Simple_repeat Simple_repeat 2 37 0 7 1099 749 110 0 8 chr9 67380421 67380540 -56695632 + (GA)n Simple_repeat Simple_repeat 1 118 0 7 1099 324 0 0 0 chr9 67380857 67380893 -56695279 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1099 324 0 0 0 chr9 67380893 67380928 -56695244 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1099 834 144 0 0 chr9 67381626 67381806 -56694366 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1099 233 152 30 0 chr9 67381831 67381897 -56694275 + (CAGA)n Simple_repeat Simple_repeat 3 70 0 7 1099 255 196 59 0 chr9 67383208 67383259 -56692913 + B4 SINE B4 81 134 -158 7 1099 294 211 143 43 chr9 67383219 67383300 -56692872 + B1_Mur3 SINE Alu 10 98 -52 7 1099 21 0 0 0 chr9 67383300 67383321 -56692851 + AT_rich Low_complexity Low_complexity 1 21 0 7 1099 1327 154 5 9 chr9 67384255 67384471 -56691701 - B3 SINE B2 -1 215 1 7 1099 876 219 75 11 chr9 67384592 67384793 -56691379 - MTD LTR MaLR -14 405 205 7 1099 1994 155 123 21 chr9 67384793 67385168 -56691004 + MTC LTR MaLR 1 413 -8 7 1099 792 223 75 16 chr9 67385170 67385357 -56690815 - MTD LTR MaLR -210 209 12 7 1099 183 80 0 0 chr9 67386024 67386049 -56690123 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 7 1099 4434 18 2 0 chr9 67386297 67386789 -56689383 + MT2_Mm LTR ERVL 1 493 0 7 1099 21 0 0 0 chr9 67388095 67388116 -56688056 + AT_rich Low_complexity Low_complexity 1 21 0 7 1099 377 272 96 9 chr9 67388867 67388982 -56687190 + LTR84a LTR ERVL 5 129 -628 7 1099 425 209 233 124 chr9 67390127 67390329 -56685843 - ID_B1 SINE B4 0 224 1 7 1099 750 231 38 28 chr9 67390609 67390796 -56685376 - B3A SINE B2 -9 186 1 7 1099 21 0 0 0 chr9 67390864 67390885 -56685287 + AT_rich Low_complexity Low_complexity 1 21 0 7 1099 654 266 13 123 chr9 67391385 67391621 -56684551 - B4A SINE B4 -76 216 7 7 1099 444 19 0 0 chr9 67391689 67391742 -56684430 + (TCTA)n Simple_repeat Simple_repeat 3 55 0 7 1099 211 261 200 0 chr9 67391742 67391807 -56684365 - PB1D10 SINE Alu -35 82 5 7 1099 214 217 164 16 chr9 67391759 67391820 -56684352 - ID_B1 SINE B4 -92 132 63 7 1099 297 299 122 20 chr9 67391811 67391958 -56684214 + MER74A LTR ERVL 254 415 -143 7 1099 464 314 7 9 chr9 67391953 67392084 -56684088 + B4A SINE B4 149 286 -6 7 1099 297 0 0 0 chr9 67392090 67392123 -56684049 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1099 241 261 102 0 chr9 67393275 67393363 -56682809 + RMER15 LTR ERVL 421 517 -58 7 1099 282 308 80 64 chr9 67393564 67393689 -56682483 - B1F2 SINE Alu -21 128 2 7 1099 527 277 117 19 chr9 67393689 67393882 -56682290 - MLT1F1 LTR MaLR -286 262 60 7 1099 651 213 208 0 chr9 67393937 67394120 -56682052 - ID_B1 SINE B4 -2 222 2 7 1099 396 0 0 0 chr9 67394710 67394754 -56681418 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1099 554 295 138 54 chr9 67395265 67395688 -56680484 + MLT1D LTR MaLR 9 498 -7 7 1099 1888 169 34 25 chr9 67395698 67396094 -56680078 + ORR1A1 LTR MaLR 5 378 0 7 1099 230 342 33 50 chr9 67396109 67396229 -56679943 + ORR1E LTR MaLR 80 197 -162 7 1099 270 216 0 0 chr9 67396653 67396704 -56679468 + B4A SINE B4 6 56 -236 7 1099 338 216 34 59 chr9 67396720 67396838 -56679334 + B4A SINE B4 115 229 -63 7 1099 368 274 101 20 chr9 67396838 67396987 -56679185 + RSINE1 SINE B4 1 161 -4 7 1099 423 0 0 0 chr9 67398260 67398307 -56677865 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1099 1178 68 0 0 chr9 67398371 67398518 -56677654 - B1_Mus2 SINE Alu 0 147 1 7 1099 692 163 96 16 chr9 67398598 67398723 -56677449 - B1_Mur1 SINE Alu -4 145 11 7 1099 586 160 182 8 chr9 67398906 67399032 -56677140 + B1_Mur2 SINE Alu 1 148 -1 7 1099 281 301 131 29 chr9 67399379 67399516 -56676656 + LTR84b LTR ERVL 255 405 -356 7 1099 467 241 117 29 chr9 67401044 67401181 -56674991 + B1F SINE Alu 1 149 0 7 1099 329 321 43 30 chr9 67401259 67401423 -56674749 + HAL1-3A_ME LINE L1 2284 2449 -409 7 1099 8662 22 0 0 chr9 67401529 67402970 -56673202 - L1Md_T LINE L1 0 6582 5142 7 1099 682 305 91 79 chr9 67404426 67404832 -56671340 + RMER15 LTR ERVL 14 571 -4 7 1099 378 290 20 0 chr9 67404962 67405062 -56671110 + PB1D7 SINE Alu 14 115 -5 7 1099 768 65 0 0 chr9 67405848 67405955 -56670217 + (TC)n Simple_repeat Simple_repeat 1 107 0 7 1099 268 314 29 19 chr9 67406053 67406157 -56670015 + MER5A1 DNA MER1_type 13 117 -49 7 1099 739 196 0 57 chr9 67406184 67406341 -56669831 + B1_Mus1 SINE Alu 1 148 0 7 1099 337 216 40 13 chr9 67407047 67407122 -56669050 + RMER30 DNA MER1_type 10 86 -116 7 1099 201 154 0 0 chr9 67407127 67407166 -56669006 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 7 1099 213 211 0 0 chr9 67407173 67407211 -56668961 + (TAGG)n Simple_repeat Simple_repeat 2 39 0 7 1099 423 259 17 33 chr9 67407211 67407331 -56668841 + RMER30 DNA MER1_type 85 202 0 7 1099 817 164 57 0 chr9 67407566 67407706 -56668466 + B1_Mur3 SINE Alu 1 148 -1 7 1099 1153 227 116 17 chr9 67407706 67408040 -56668132 - MTEb LTR MaLR -10 369 1 7 1099 250 80 20 20 chr9 67408517 67408568 -56667604 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1099 357 362 88 30 chr9 67408761 67409091 -56667081 + ORR1E LTR MaLR 11 359 0 7 1099 203 147 0 0 chr9 67409665 67409699 -56666473 + (C)n Simple_repeat Simple_repeat 1 34 0 7 1099 428 159 23 0 chr9 67410636 67410724 -56665448 + Lx6 LINE L1 7368 7457 -3 7 1099 610 237 78 132 chr9 67410838 67411042 -56665130 - B3A SINE B2 0 198 2 7 1099 567 262 63 35 chr9 67411063 67411237 -56664935 - B3 SINE B2 0 216 38 7 1099 288 215 63 8 chr9 67411531 67411604 -56664568 - AluG_3 SINE Alu -89 222 157 7 1099 493 293 172 63 chr9 67412585 67412847 -56663325 - B4 SINE B4 -1 291 1 7 1099 841 128 122 50 chr9 67413200 67413381 -56662791 + B2_Mm2 SINE B2 1 194 -1 7 1099 318 324 0 0 chr9 67413423 67413528 -56662644 + (TG)n Simple_repeat Simple_repeat 2 106 0 7 1099 288 0 0 0 chr9 67414153 67414185 -56661987 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1099 1128 271 76 8 chr9 67414964 67415318 -56660854 - MTEa LTR MaLR -1 378 1 7 1099 616 195 98 0 chr9 67415644 67415767 -56660405 + B1_Mm SINE Alu 13 147 0 7 1099 237 139 0 0 chr9 67415767 67415810 -56660362 + (CAA)n Simple_repeat Simple_repeat 2 44 0 8 1099 203 255 0 0 chr9 67416444 67416491 -56659681 + (TCCG)n Simple_repeat Simple_repeat 3 49 0 8 1099 439 252 26 18 chr9 67416515 67416628 -56659544 - B1_Mur1 SINE Alu -34 115 2 8 1099 789 295 0 5 chr9 67416715 67416923 -56659249 + ID_B1 SINE B4 1 207 -17 8 1099 204 331 55 31 chr9 67417597 67417725 -56658447 - MIR3 SINE MIR -84 184 54 8 1099 393 22 0 0 chr9 67418727 67418773 -56657399 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1099 589 322 50 62 chr9 67418801 67419058 -56657114 - B4A SINE B4 -11 281 3 8 1099 521 304 56 25 chr9 67419071 67419267 -56656905 + MER20 DNA MER1_type 11 212 -7 8 1099 540 200 0 62 chr9 67419556 67419748 -56656424 + (CACTG)n Simple_repeat Simple_repeat 1 180 0 8 1099 324 188 0 59 chr9 67419760 67419862 -56656310 + (CACTG)n Simple_repeat Simple_repeat 1 96 0 8 1099 432 0 0 0 chr9 67420336 67420384 -56655788 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 1099 357 24 0 0 chr9 67420384 67420425 -56655747 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1099 317 156 13 0 chr9 67420427 67420504 -56655668 + GA-rich Low_complexity Low_complexity 2 79 0 8 1099 207 88 0 0 chr9 67420537 67420571 -56655601 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1099 707 283 70 49 chr9 67421811 67422097 -56654075 - B4 SINE B4 0 292 1 8 1099 189 0 0 0 chr9 67423160 67423181 -56652991 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1099 632 285 87 51 chr9 67423253 67423449 -56652723 + ID_B1 SINE B4 2 204 -20 8 1099 1144 166 25 20 chr9 67423622 67423825 -56652347 - B3 SINE B2 -11 205 2 8 1099 710 266 112 54 chr9 67423849 67424067 -56652105 + ORR1E LTR MaLR 72 295 -64 8 1099 811 186 21 0 chr9 67424067 67424212 -56651960 - B1_Mur2 SINE Alu -1 148 1 8 1099 710 267 34 123 chr9 67424212 67424277 -56651895 + ORR1E LTR MaLR 296 359 0 8 1099 1807 138 101 7 chr9 67424594 67424892 -56651280 - ORR1A3 LTR MaLR 0 326 1 8 1099 757 104 77 14 chr9 67425104 67425243 -56650929 - B2_Mm2 SINE B2 0 195 53 8 1099 198 103 0 0 chr9 67425282 67425311 -56650861 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1099 1041 211 27 14 chr9 67425311 67425532 -56650640 - ID_B1 SINE B4 0 224 1 8 1099 636 250 56 61 chr9 67425704 67425917 -56650255 - B3 SINE B2 0 216 5 8 1099 390 179 0 15 chr9 67426747 67426815 -56649357 + B4A SINE B4 5 71 -221 8 1099 478 226 47 9 chr9 67426826 67426933 -56649239 + B4A SINE B4 168 278 -14 8 1099 192 77 0 0 chr9 67426935 67426961 -56649211 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1099 581 214 213 7 chr9 67427211 67427352 -56648820 - B3A SINE B2 -23 175 6 8 1099 432 0 0 0 chr9 67427909 67427957 -56648215 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1099 281 285 118 108 chr9 67428235 67428514 -56647658 + B4 SINE B4 10 291 -1 8 1099 1062 262 42 21 chr9 67428569 67428955 -56647217 + L1MA4 LINE L1 5518 5911 -389 8 1099 308 292 175 55 chr9 67429168 67429494 -56646678 + MLT1A0 LTR MaLR 1 365 0 8 1099 310 263 13 0 chr9 67430091 67430167 -56646005 + B4 SINE B4 1 77 -215 8 1099 547 261 0 8 chr9 67430202 67430333 -56645839 - B1_Mur1 SINE Alu -17 132 3 8 1099 386 215 12 48 chr9 67430458 67430541 -56645631 + B4 SINE B4 192 271 -21 8 1099 565 229 37 43 chr9 67431620 67431784 -56644388 + RSINE1 SINE B4 3 165 0 8 1099 206 140 16 66 chr9 67433648 67433689 -56642483 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 8 1099 1489 57 0 0 chr9 67433689 67433865 -56642307 - B2_Mm2 SINE B2 -18 177 2 8 1099 206 140 16 66 chr9 67433865 67433884 -56642288 + (TTTA)n Simple_repeat Simple_repeat 3 21 0 8 1099 423 267 114 30 chr9 67434212 67434378 -56641794 + MER53 DNA hAT 11 190 -3 8 1099 605 275 22 33 chr9 67434593 67434777 -56641395 + B3A SINE B2 1 182 -16 8 1099 369 0 0 0 chr9 67435423 67435464 -56640708 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1099 1413 80 5 11 chr9 67435565 67435755 -56640417 + B2_Mm2 SINE B2 1 189 -6 8 1099 285 239 221 19 chr9 67435903 67435933 -56640239 - B2_Mm2 SINE B2 -5 190 150 8 1099 423 98 0 0 chr9 67435933 67435994 -56640178 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1099 586 196 91 9 chr9 67435994 67436121 -56640051 - B3A SINE B2 -46 149 1 8 1099 2238 186 44 17 chr9 67436754 67437164 -56639008 - MTC LTR MaLR 0 421 1 8 1099 723 214 35 6 chr9 67437452 67437621 -56638551 - MTE2b LTR MaLR -31 348 175 8 1099 648 221 21 28 chr9 67438191 67438335 -56637837 - B1_Mur1 SINE Alu -1 148 6 8 1099 869 244 6 0 chr9 67438386 67438558 -56637614 - B3A SINE B2 -25 173 1 8 1099 314 200 69 28 chr9 67438633 67438705 -56637467 + RLTR25B LTR ERVK 435 509 -519 8 1099 790 57 19 0 chr9 67438643 67438748 -56637424 + B1_Mm SINE Alu 41 147 0 8 1099 929 124 0 27 chr9 67438776 67438953 -56637219 + GA-rich Low_complexity Low_complexity 3 175 0 8 1099 765 106 0 0 chr9 67438953 67439066 -56637106 + (GGGGA)n Simple_repeat Simple_repeat 4 116 0 8 1099 258 246 77 0 chr9 67439136 67439201 -56636971 - MER103 DNA DNA -77 89 20 8 1099 268 200 0 39 chr9 67439498 67439550 -56636622 - B1_Mur3 SINE Alu -46 103 54 8 1099 289 209 186 17 chr9 67439638 67439757 -56636415 - B3A SINE B2 -35 181 3 8 1099 270 0 0 0 chr9 67439767 67439797 -56636375 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1099 432 0 0 0 chr9 67439797 67439844 -56636328 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1099 242 337 99 30 chr9 67439844 67439945 -56636227 - MIR SINE MIR -83 125 18 8 1099 194 0 0 37 chr9 67439968 67439995 -56636177 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 8 1099 225 0 0 0 chr9 67440367 67440392 -56635780 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1099 568 335 38 34 chr9 67440460 67440726 -56635446 - B4A SINE B4 -7 285 19 8 1099 1146 84 0 0 chr9 67441740 67441883 -56634289 + B1_Mus1 SINE Alu 1 143 -5 8 1099 456 213 89 36 chr9 67441884 67441996 -56634176 - B3A SINE B2 -80 118 1 8 1099 244 178 101 73 chr9 67442590 67442699 -56633473 + MLT1D LTR MaLR 324 435 -70 8 1099 374 357 0 57 chr9 67442781 67442903 -56633269 + B4A SINE B4 4 118 -174 8 1099 244 273 33 98 chr9 67442922 67443044 -56633128 - Arthur1A DNA Tip100 -62 115 2 8 1099 807 205 46 0 chr9 67443751 67443902 -56632270 - ID_B1 SINE B4 -1 223 66 8 1099 1418 265 111 140 chr9 67444093 67444489 -56631683 + RMER19C LTR ERVK 2 559 -343 8 1099 216 0 0 0 chr9 67444489 67444513 -56631659 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 8 1099 1478 228 4 87 chr9 67444513 67444874 -56631298 + RMER19C LTR ERVK 293 902 0 8 1099 228 281 25 140 chr9 67444874 67444916 -56631256 - RLTR22_Mur LTR ERVK -389 1459 1436 8 1099 1168 75 0 0 chr9 67445765 67445912 -56630260 + B1_Mus2 SINE Alu 1 147 0 8 1099 298 224 0 0 chr9 67446715 67446773 -56629399 + RSINE1 SINE B4 108 165 0 8 1099 34 24 0 0 chr9 67446817 67446858 -56629314 + AT_rich Low_complexity Low_complexity 1 41 0 8 1099 222 37 0 0 chr9 67446864 67446891 -56629281 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1099 297 0 0 0 chr9 67446891 67446923 -56629249 + (TA)n Simple_repeat Simple_repeat 2 34 0 8 1099 638 284 19 73 chr9 67447733 67447938 -56628234 + B4A SINE B4 99 292 0 8 1099 649 244 75 6 chr9 67448552 67448713 -56627459 + Lx8 LINE L1 7058 7229 -244 8 1099 533 241 26 52 chr9 67449824 67449977 -56626195 + B4A SINE B4 27 175 -117 8 1099 227 235 43 76 chr9 67449897 67449989 -56626183 + PB1 SINE Alu 13 101 -26 8 1099 22 35 0 0 chr9 67450088 67450117 -56626055 + AT_rich Low_complexity Low_complexity 1 29 0 8 1099 656 241 57 8 chr9 67451382 67451556 -56624616 + B3A SINE B2 29 205 -11 8 1099 868 189 0 20 chr9 67451591 67451742 -56624430 + B1_Mur3 SINE Alu 2 149 0 8 1099 454 259 70 21 chr9 67452118 67452260 -56623912 + MLT1A1 LTR MaLR 248 396 -12 8 1099 228 111 0 0 chr9 67453550 67453586 -56622586 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1099 216 97 0 0 chr9 67454378 67454409 -56621763 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 8 1099 221 0 35 0 chr9 67454738 67454767 -56621405 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8 1099 1112 35 14 34 chr9 67454767 67454905 -56621267 - B1_Mm SINE Alu -9 138 1 8 1099 337 161 0 0 chr9 67456352 67456408 -56619764 - MTEb LTR MaLR -10 369 314 8 1099 1232 177 69 40 chr9 67456425 67456672 -56619500 - MTEb LTR MaLR -124 255 2 8 1099 180 77 0 0 chr9 67457043 67457069 -56619103 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1099 577 157 138 23 chr9 67457073 67457203 -56618969 - B1F2 SINE Alu 0 149 5 8 1099 809 228 144 0 chr9 67457311 67457489 -56618683 + B4 SINE B4 24 227 -65 8 1099 656 213 24 8 chr9 67457489 67457612 -56618560 + B3A SINE B2 1 125 -73 8 1099 1244 138 0 5 chr9 67457616 67457805 -56618367 - MTC LTR MaLR -233 188 1 8 1099 346 202 111 16 chr9 67457901 67458027 -56618145 + (TAGG)n Simple_repeat Simple_repeat 3 140 0 8 1099 577 259 36 6 chr9 67458211 67458368 -56617804 + B3A SINE B2 2 171 -22 8 1099 372 289 149 41 chr9 67458652 67458847 -56617325 + MER20 DNA MER1_type 4 219 0 8 1099 1108 191 5 37 chr9 67459967 67460185 -56615987 - B3 SINE B2 -5 211 1 8 1099 810 246 36 44 chr9 67460203 67460215 -56615957 - B4 SINE B4 -69 223 217 8 1099 252 0 0 0 chr9 67460215 67460243 -56615929 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1099 810 246 36 44 chr9 67460243 67460455 -56615717 - B4 SINE B4 -76 216 1 8 1099 1330 199 181 31 chr9 67460876 67461229 -56614943 - MTD LTR MaLR -1 418 13 8 1099 407 219 128 37 chr9 67461663 67461772 -56614400 + RSINE1 SINE B4 3 121 -44 8 1099 324 0 0 0 chr9 67461802 67461838 -56614334 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 9 1099 528 226 31 24 chr9 67461888 67462015 -56614157 + MER67C LTR ERV1 581 708 -3 9 1099 33 0 0 0 chr9 67462206 67462239 -56613933 + AT_rich Low_complexity Low_complexity 1 33 0 9 1099 191 269 35 82 chr9 67463062 67463147 -56613025 - MER5A DNA MER1_type -100 89 9 9 1099 759 228 45 45 chr9 67463406 67463608 -56612564 - MER2 DNA MER2_type -19 326 125 9 1099 513 206 78 19 chr9 67463629 67463759 -56612413 - ID_B1 SINE B4 -72 220 78 9 1099 2000 133 86 16 chr9 67464173 67464556 -56611616 + RMER17C LTR ERVK 1 410 0 9 1099 473 255 31 75 chr9 67464682 67464843 -56611329 - ID_B1 SINE B4 -70 154 1 9 1099 216 320 51 0 chr9 67465308 67465386 -56610786 + MIR SINE MIR 49 130 -78 9 1099 261 320 0 60 chr9 67466184 67466317 -56609855 + G-rich Low_complexity Low_complexity 6 130 0 9 1099 185 261 123 55 chr9 67466558 67466631 -56609541 - MER5A DNA MER1_type -83 106 29 9 1099 676 234 151 35 chr9 67466867 67467066 -56609106 - ID_B1 SINE B4 -2 222 1 9 1099 1092 39 0 0 chr9 67467720 67467848 -56608324 + B1_Mus1 SINE Alu 2 129 -19 9 1099 1083 139 0 0 chr9 67467878 67468058 -56608114 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1099 438 108 0 0 chr9 67468061 67468126 -56608046 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1099 918 133 59 0 chr9 67468143 67468278 -56607894 + B1_Mus2 SINE Alu 2 144 -3 9 1099 21 0 0 0 chr9 67468283 67468304 -56607868 + AT_rich Low_complexity Low_complexity 1 21 0 9 1099 494 189 0 78 chr9 67468314 67468417 -56607755 + B1_Mus2 SINE Alu 33 127 -20 9 1099 307 0 47 0 chr9 67468434 67468477 -56607695 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 9 1099 635 282 36 50 chr9 67469602 67469822 -56606350 + ID_B1 SINE B4 1 217 -7 9 1099 703 241 29 46 chr9 67470236 67470410 -56605762 - B3A SINE B2 -27 171 1 9 1099 21 0 0 0 chr9 67470458 67470479 -56605693 + AT_rich Low_complexity Low_complexity 1 21 0 9 1099 1068 177 43 29 chr9 67470703 67470912 -56605260 + ID_B1 SINE B4 1 212 -12 9 1099 531 74 0 0 chr9 67470969 67471050 -56605122 + (TC)n Simple_repeat Simple_repeat 2 82 0 9 1099 351 0 0 0 chr9 67471050 67471089 -56605083 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1099 801 288 85 30 chr9 67471679 67472008 -56604164 + MLT1B LTR MaLR 38 384 -6 9 1099 264 30 0 0 chr9 67472839 67472872 -56603300 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1099 375 41 0 0 chr9 67472906 67472955 -56603217 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1099 477 0 0 0 chr9 67472989 67473042 -56603130 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1099 975 242 0 28 chr9 67473122 67473339 -56602833 - B4 SINE B4 -69 223 13 9 1099 282 29 0 0 chr9 67474374 67474409 -56601763 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1099 299 284 165 0 chr9 67474421 67474530 -56601642 - B1F1 SINE Alu -21 128 2 9 1099 678 282 14 67 chr9 67474552 67474761 -56601411 - B3A SINE B2 0 198 1 9 1099 796 304 18 14 chr9 67474773 67474990 -56601182 - B4A SINE B4 -73 219 2 9 1099 786 189 0 27 chr9 67475357 67475504 -56600668 + B1_Mur3 SINE Alu 1 143 -6 9 1099 463 273 71 49 chr9 67475532 67475717 -56600455 - B3A SINE B2 -4 212 28 9 1099 701 238 14 7 chr9 67475787 67475931 -56600241 + B1_Mur1 SINE Alu 5 149 0 9 1099 228 67 0 0 chr9 67475952 67475982 -56600190 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 9 1099 932 185 102 10 chr9 67476030 67476227 -56599945 + B3 SINE B2 2 216 0 9 1099 235 304 115 24 chr9 67476246 67476411 -56599761 - L2 LINE L2 -1540 1879 1700 9 1099 26 0 0 0 chr9 67476792 67476818 -56599354 + AT_rich Low_complexity Low_complexity 1 26 0 9 1099 776 235 96 15 chr9 67476895 67477094 -56599078 - B3 SINE B2 0 216 2 9 1099 478 212 108 121 chr9 67478434 67478600 -56597572 + RSINE1 SINE B4 2 165 0 9 1099 366 80 0 0 chr9 67478615 67478665 -56597507 + (CAGG)n Simple_repeat Simple_repeat 2 51 0 9 1099 794 11 0 0 chr9 67478691 67478782 -56597390 - B1_Mm SINE Alu 0 147 57 9 1099 722 254 40 11 chr9 67478886 67479061 -56597111 + B3A SINE B2 16 195 -3 9 1099 228 67 0 0 chr9 67481766 67481796 -56594376 + (CCG)n Simple_repeat Simple_repeat 3 32 0 9 1099 453 191 82 0 chr9 67482218 67482328 -56593844 - PB1D9 SINE Alu 0 120 2 9 1099 23 54 0 0 chr9 67482621 67482658 -56593514 + AT_rich Low_complexity Low_complexity 1 37 0 9 1099 1228 160 0 66 chr9 67482903 67483131 -56593041 + URR1A DNA MER1_type 8 220 -6 9 1099 552 252 105 38 chr9 67482960 67483170 -56593002 - CYRA11_Mm Unknown Y-chromosome -272 345 122 9 1099 542 168 22 2 chr9 67483591 67483692 -56592480 - PB1D9 SINE Alu -13 107 5 9 1099 223 254 234 17 chr9 67483820 67483923 -56592249 + L2a LINE L2 3277 3421 -5 9 1099 560 253 20 0 chr9 67483952 67484098 -56592074 - B1F1 SINE Alu 0 149 1 9 1099 526 235 148 87 chr9 67484244 67484542 -56591630 + RMER10A LTR ERVL 122 437 -5 9 1099 497 240 108 62 chr9 67486156 67486285 -56589887 + ID_B1 SINE B4 80 214 -10 9 1099 216 0 0 0 chr9 67486292 67486316 -56589856 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1099 291 209 33 50 chr9 67486430 67486493 -56589679 - B1_Mur1 SINE Alu -2 147 87 9 1099 276 30 0 0 chr9 67486493 67486526 -56589646 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 1099 279 264 25 89 chr9 67486526 67486541 -56589631 - B1F1 SINE Alu -63 86 74 9 1099 406 218 105 140 chr9 67486549 67486720 -56589452 + RSINE1 SINE B4 82 290 -2 9 1099 231 36 0 0 chr9 67486798 67486826 -56589346 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1099 472 306 8 0 chr9 67486864 67486985 -56589187 - B3A SINE B2 -76 122 1 9 1099 355 287 24 176 chr9 67487029 67487194 -56588978 - B1_Mur1 SINE Alu -7 142 3 9 1099 569 39 38 25 chr9 67488348 67488427 -56587745 - B2_Mm2 SINE B2 -22 173 94 9 1099 1259 41 0 0 chr9 67488432 67488577 -56587595 + B1_Mm SINE Alu 2 146 -1 9 1099 332 21 64 0 chr9 67488582 67488629 -56587543 + (TAAAAA)n Simple_repeat Simple_repeat 3 52 0 9 1099 645 99 83 320 chr9 67488658 67488911 -56587261 - B2_Mm2 SINE B2 0 195 3 9 1099 733 220 122 11 chr9 67489004 67489192 -56586980 - B3 SINE B2 -6 210 2 9 1099 237 268 0 0 chr9 67489433 67489451 -56586721 + ID4_ SINE ID 8 63 -20 9 1099 242 158 0 0 chr9 67489451 67489489 -56586683 + ID SINE ID 27 64 -160 9 1099 230 261 0 55 chr9 67489516 67489589 -56586583 + CT-rich Low_complexity Low_complexity 1 69 0 9 1099 596 165 19 10 chr9 67489589 67489693 -56586479 - B1_Mur2 SINE Alu -20 129 25 9 1099 714 216 20 9 chr9 67489989 67490140 -56586032 - B1F SINE Alu -1 148 6 9 1099 4971 53 10 2 chr9 67490174 67490794 -56585378 - L1_Mus3 LINE L1 -4 6634 6010 9 1099 1043 71 21 0 chr9 67490794 67490934 -56585238 + L1_Mus3 LINE L1 5894 6036 -602 9 1099 818 252 38 28 chr9 67491393 67491605 -56584567 - ID_B1 SINE B4 0 224 11 9 1099 376 264 143 47 chr9 67491618 67491876 -56584296 - L1MC5 LINE L1 -427 7534 7252 9 1099 360 152 0 0 chr9 67491908 67491974 -56584198 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 1099 779 182 7 13 chr9 67491978 67492128 -56584044 - B1_Mur3 SINE Alu 0 149 1 9 1099 1162 82 0 0 chr9 67492223 67492370 -56583802 + B1_Mm SINE Alu 1 147 0 9 1099 723 188 15 8 chr9 67492389 67492523 -56583649 - B1_Mur1 SINE Alu -13 136 2 9 1099 2889 19 0 0 chr9 67492562 67492884 -56583288 - RLTRETN_Mm LTR ERVK 0 322 1 9 1099 1310 238 142 0 chr9 67492886 67493209 -56582963 - MTE2b LTR MaLR -8 371 3 9 1099 1107 75 0 7 chr9 67493391 67493538 -56582634 - B1_Mm SINE Alu 0 147 2 9 1099 783 227 47 0 chr9 67493725 67493897 -56582275 + B3 SINE B2 37 216 0 9 1099 2443 156 5 70 chr9 67494001 67494331 -56581841 - MTC LTR MaLR -8 413 96 9 1099 234 0 0 0 chr9 67494331 67494357 -56581815 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1099 2443 156 5 70 chr9 67494357 67494369 -56581803 - MTC LTR MaLR -326 95 95 9 1099 697 188 56 28 chr9 67494369 67494511 -56581661 - B1_Mus1 SINE Alu 0 148 3 9 1099 2443 156 5 70 chr9 67494511 67494609 -56581563 - MTC LTR MaLR -326 95 1 9 1099 191 261 40 92 chr9 67495048 67495124 -56581048 + L2b LINE L2 3064 3135 -240 9 1099 562 230 8 16 chr9 67495140 67495268 -56580904 + RSINE1 SINE B4 3 129 -36 9 1099 661 258 25 61 chr9 67495397 67495595 -56580577 - B3A SINE B2 -7 191 1 9 1099 774 241 134 96 chr9 67495599 67495934 -56580238 - ORR1E LTR MaLR -11 348 1 9 1099 222 37 0 0 chr9 67496083 67496110 -56580062 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1099 2449 102 79 0 chr9 67496260 67496641 -56579531 - IAPLTR2a LTR ERVK 0 411 1 9 1099 6262 38 3 19 chr9 67496643 67497399 -56578773 - IAPEz-int LTR ERVK -2 6479 5736 9 1099 2288 65 0 0 chr9 67497398 67497676 -56578496 - IAPEz-int LTR ERVK -4845 1636 1359 9 1099 3968 55 2 18 chr9 67497676 67498179 -56577993 - IAPEz-int LTR ERVK -5819 662 168 9 1099 234 267 0 0 chr9 67498179 67498224 -56577948 - RLTR27 LTR ERVK -34 275 231 9 1099 566 148 0 142 chr9 67498224 67498358 -56577814 - IAPEz-int LTR ERVK -6358 123 9 9 1099 1447 67 151 0 chr9 67498359 67498584 -56577588 - IAPLTR2a LTR ERVK 0 411 153 9 1099 2502 82 127 2 chr9 67498584 67498977 -56577195 - IAPLTR2_Mm LTR ERVK -33 442 1 9 1099 329 0 0 24 chr9 67499531 67499573 -56576599 + (TAA)n Simple_repeat Simple_repeat 2 42 0 9 1099 290 98 20 0 chr9 67499755 67499806 -56576366 + (CAGA)n Simple_repeat Simple_repeat 4 55 0 9 1099 524 240 161 8 chr9 67499870 67500000 -56576172 + MTD LTR MaLR 196 345 -74 9 1099 344 138 15 0 chr9 67500000 67500065 -56576107 + MTD LTR MaLR 346 411 -8 1 1099 197 33 33 0 chr9 67500098 67500128 -56576044 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1099 879 53 2 4 chr9 67500128 67500258 -56575914 - B1_Mm SINE Alu -2 147 20 3 1099 835 211 52 52 chr9 67500428 67500638 -56575534 + B3 SINE B2 1 210 -6 4 1099 963 118 0 0 chr9 67500801 67500937 -56575235 + Lx3A LINE L1 6587 6722 -259 5 1099 1091 92 0 28 chr9 67500937 67501115 -56575057 - MTB_Mm LTR MaLR -234 173 1 6 1099 243 0 0 0 chr9 67501363 67501390 -56574782 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1099 319 36 35 35 chr9 67501390 67501447 -56574725 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 8 1099 562 230 8 0 chr9 67501596 67501722 -56574450 + B1_Mur3 SINE Alu 1 127 -22 9 1099 434 330 42 37 chr9 67501738 67501927 -56574245 + B3 SINE B2 21 210 -6 1 1099 198 171 0 0 chr9 67502022 67502063 -56574109 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 1100 720 167 16 0 chr9 67502086 67502212 -56573960 - B1_Mur3 SINE Alu -19 130 3 1 1100 1136 198 146 7 chr9 67502212 67502487 -56573685 + MTD LTR MaLR 107 419 0 1 1100 745 218 38 47 chr9 67502686 67502898 -56573274 + B3 SINE B2 1 210 -6 1 1100 737 226 7 0 chr9 67503572 67503718 -56572454 + B1_Mur1 SINE Alu 1 147 -2 1 1100 197 258 50 30 chr9 67503957 67504057 -56572115 + MIRc SINE MIR 92 193 -75 1 1100 563 152 0 19 chr9 67504230 67504337 -56571835 - B1_Mur3 SINE Alu -2 147 43 1 1100 1097 201 14 14 chr9 67504371 67504583 -56571589 - B3 SINE B2 0 216 5 1 1100 351 287 30 0 chr9 67504617 67504718 -56571454 + ID_B1 SINE B4 2 105 -119 1 1100 1789 154 60 19 chr9 67504698 67505062 -56571110 + ORR1B1 LTR MaLR 16 394 0 2 1100 384 219 20 20 chr9 67505062 67505157 -56571015 + PB1D10 SINE Alu 22 116 -1 2 1100 553 296 43 11 chr9 67505165 67505409 -56570763 - L1MB7 LINE L1 -9 6165 5916 2 1100 198 0 0 0 chr9 67505508 67505530 -56570642 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1100 473 282 14 0 chr9 67505810 67505846 -56570326 - B3A SINE B2 0 198 161 2 1100 372 22 0 0 chr9 67505846 67505891 -56570281 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1100 473 282 14 0 chr9 67505891 67505996 -56570176 - B3A SINE B2 -38 160 56 2 1100 439 237 8 48 chr9 67506000 67506124 -56570048 - RSINE1 SINE B4 -46 119 1 2 1100 567 113 28 9 chr9 67506165 67506272 -56569900 + CT-rich Low_complexity Low_complexity 2 110 0 2 1100 1094 176 54 0 chr9 67507397 67507601 -56568571 - B3 SINE B2 0 216 2 2 1100 324 0 0 0 chr9 67507785 67507821 -56568351 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1100 2216 222 76 15 chr9 67507947 67508472 -56567700 - Lx2B LINE L1 -7 6993 6437 3 1100 589 218 49 0 chr9 67508562 67508704 -56567468 + B3 SINE B2 55 203 -13 3 1100 463 239 11 0 chr9 67508712 67509062 -56567110 + (CA)n Simple_repeat Simple_repeat 1 354 0 3 1100 325 257 6 6 chr9 67509073 67509253 -56566919 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1100 248 259 7 0 chr9 67509272 67509407 -56566765 + (CA)n Simple_repeat Simple_repeat 1 136 0 3 1100 401 245 4 0 chr9 67509418 67509666 -56566506 + (CA)n Simple_repeat Simple_repeat 1 248 0 3 1100 422 243 6 0 chr9 67509677 67509854 -56566318 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1100 546 274 15 0 chr9 67509923 67510058 -56566114 + B1_Mur1 SINE Alu 5 141 -8 3 1100 324 0 0 0 chr9 67510168 67510204 -56565968 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1100 433 312 16 76 chr9 67510287 67510471 -56565701 - B4A SINE B4 -118 174 2 3 1100 357 162 54 10 chr9 67510936 67511033 -56565139 + MTD LTR MaLR 275 419 0 3 1100 313 131 63 32 chr9 67511035 67511098 -56565074 + B4A SINE B4 209 273 -19 3 1100 360 0 0 0 chr9 67511144 67511184 -56564988 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1100 716 257 91 0 chr9 67511185 67511372 -56564800 + B4A SINE B4 86 289 -3 3 1100 251 190 33 33 chr9 67511426 67511486 -56564686 + RLTR25A LTR ERVK 513 572 -531 4 1100 733 43 0 0 chr9 67511433 67511526 -56564646 + B1_Mus2 SINE Alu 46 138 -9 4 1100 369 0 0 0 chr9 67511526 67511567 -56564605 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1100 226 231 19 0 chr9 67511618 67511670 -56564502 - B3A SINE B2 -145 53 1 4 1100 492 197 173 0 chr9 67512289 67512416 -56563756 + B1F2 SINE Alu 1 149 0 4 1100 600 176 144 0 chr9 67512421 67512546 -56563626 - B1_Mur1 SINE Alu -6 143 1 4 1100 563 219 186 47 chr9 67512546 67512717 -56563455 - B3A SINE B2 -1 197 2 4 1100 856 203 268 76 chr9 67513138 67513310 -56562862 - ORR1D1 LTR MaLR 0 374 175 4 1100 666 84 0 0 chr9 67513310 67513417 -56562755 + (GA)n Simple_repeat Simple_repeat 2 108 0 4 1100 856 203 268 76 chr9 67513417 67513529 -56562643 - ORR1D1 LTR MaLR -200 174 29 4 1100 1112 119 32 11 chr9 67513529 67513716 -56562456 - B2_Mm2 SINE B2 -3 192 2 4 1100 856 203 268 76 chr9 67513716 67513744 -56562428 - ORR1D1 LTR MaLR -346 28 1 4 1100 21 57 0 0 chr9 67513925 67513960 -56562212 + AT_rich Low_complexity Low_complexity 1 35 0 5 1100 758 310 94 32 chr9 67513971 67514237 -56561935 - MT2A LTR ERVL -8 525 236 5 1100 201 39 0 0 chr9 67514237 67514263 -56561909 + (CAG)n Simple_repeat Simple_repeat 1 26 0 5 1100 758 310 94 32 chr9 67514263 67514402 -56561770 - MT2A LTR ERVL -298 235 96 5 1100 277 338 110 0 chr9 67514347 67514483 -56561689 - MTEa LTR MaLR -228 151 1 5 1100 471 282 92 20 chr9 67514814 67514966 -56561206 + RSINE1 SINE B4 3 165 0 5 1100 1158 67 6 6 chr9 67515111 67515277 -56560895 + B2_Mm2 SINE B2 9 174 -21 5 1100 870 158 50 0 chr9 67515294 67515433 -56560739 + B1_Mur4 SINE Alu 1 146 -4 5 1100 426 39 0 0 chr9 67515467 67515519 -56560653 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1100 251 282 193 35 chr9 67515519 67515633 -56560539 - B1F SINE Alu -10 139 8 5 1100 531 203 137 8 chr9 67515654 67515778 -56560394 - B1_Mur2 SINE Alu 0 149 10 5 1100 468 62 0 0 chr9 67516034 67516098 -56560074 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1100 541 316 130 12 chr9 67516112 67516365 -56559807 - B4A SINE B4 -9 283 1 6 1100 473 232 36 71 chr9 67516684 67516883 -56559289 + L1MA4 LINE L1 5177 5380 -911 6 1100 240 35 0 0 chr9 67516883 67516912 -56559260 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1100 187 31 62 0 chr9 67516921 67516953 -56559219 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 6 1100 473 215 15 79 chr9 67516953 67517020 -56559152 + L1MA4 LINE L1 5386 5450 -841 6 1100 760 219 7 0 chr9 67517181 67517327 -56558845 - B1_Mur1 SINE Alu -2 147 1 6 1100 303 213 0 0 chr9 67517525 67517600 -56558572 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1100 339 315 54 18 chr9 67517719 67517887 -56558285 + L1MA4 LINE L1 5444 5617 -695 6 1100 1321 233 38 63 chr9 67518781 67518858 -56557314 + MTE2b LTR MaLR 1 82 -297 6 1100 297 0 0 0 chr9 67518858 67518891 -56557281 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1100 1321 233 38 63 chr9 67518891 67519180 -56556992 + MTE2b LTR MaLR 83 357 -22 6 1100 600 299 114 7 chr9 67519372 67519645 -56556527 + L1MA4 LINE L1 5604 5905 -395 6 1100 315 338 79 7 chr9 67519907 67520047 -56556125 + Tigger5 DNA MER2_type 13 162 -2244 6 1100 297 345 9 0 chr9 67520108 67520221 -56555951 + Tigger5 DNA MER2_type 2292 2405 -1 6 1100 1218 15 0 0 chr9 67520539 67520676 -56555496 + B1_Mus2 SINE Alu 1 137 -10 7 1100 338 0 24 0 chr9 67520676 67520718 -56555454 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 7 1100 441 66 0 0 chr9 67520891 67520952 -56555220 - MT2B LTR ERVL -540 61 1 7 1100 1382 150 102 16 chr9 67521152 67521481 -56554691 + RLTR24 LTR ERV1 1 287 -242 7 1100 2905 15 0 21 chr9 67521481 67521815 -56554357 + IAPLTR2b LTR ERVK 1 327 0 7 1100 1382 171 34 44 chr9 67521815 67521983 -56554189 + RLTR24 LTR ERV1 288 456 -73 7 1100 479 258 29 43 chr9 67522033 67522171 -56554001 + B1F1 SINE Alu 1 136 -13 7 1100 1120 264 76 3 chr9 67522171 67522486 -56553686 - MTE2b LTR MaLR -40 339 2 7 1100 752 261 56 9 chr9 67522948 67523161 -56553011 + ID_B1 SINE B4 1 223 -1 7 1100 797 232 31 22 chr9 67523221 67523420 -56552752 - B3 SINE B2 -11 205 27 7 1100 250 62 62 0 chr9 67523438 67523486 -56552686 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1100 1222 61 0 0 chr9 67523491 67523638 -56552534 - B1_Mus2 SINE Alu 0 147 1 8 1100 340 314 16 64 chr9 67524095 67524282 -56551890 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1100 517 308 95 12 chr9 67524360 67524613 -56551559 - B4A SINE B4 -8 284 11 8 1100 344 268 7 0 chr9 67525086 67525228 -56550944 + (TG)n Simple_repeat Simple_repeat 2 144 0 8 1100 902 292 3 76 chr9 67525235 67525550 -56550622 - B4A SINE B4 0 292 1 8 1100 472 165 0 19 chr9 67526381 67526416 -56549756 + polypyrimidine Low_complexity Low_complexity 71 104 0 8 1100 1038 144 0 0 chr9 67526416 67526596 -56549576 + (TCC)n Simple_repeat Simple_repeat 1 180 0 8 1100 472 165 0 19 chr9 67526596 67526665 -56549507 + polypyrimidine Low_complexity Low_complexity 3 70 0 8 1100 710 165 0 23 chr9 67526674 67526804 -56549368 - B1_Mur2 SINE Alu -4 145 19 8 1100 1064 118 0 0 chr9 67526822 67526966 -56549206 - B1_Mus1 SINE Alu -2 146 3 8 1100 835 211 53 11 chr9 67527142 67527329 -56548843 + B3A SINE B2 1 195 -3 9 1100 732 178 6 175 chr9 67527492 67527669 -56548503 - B1_Mur4 SINE Alu -1 148 2 9 1100 297 0 0 0 chr9 67527866 67527899 -56548273 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 9 1100 194 33 0 62 chr9 67527900 67527932 -56548240 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 9 1100 1041 66 0 0 chr9 67527935 67528086 -56548086 + (TG)n Simple_repeat Simple_repeat 2 152 0 9 1100 477 293 57 0 chr9 67528120 67528243 -56547929 - RSINE1 SINE B4 -35 130 1 9 1100 403 282 109 8 chr9 67528499 67528639 -56547533 - L1MC4 LINE L1 -1196 6846 6643 9 1100 1027 202 46 5 chr9 67529062 67529256 -56546916 + B3 SINE B2 1 202 -14 9 1100 189 0 0 0 chr9 67529725 67529746 -56546426 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 9 1100 602 201 171 3 chr9 67529751 67529929 -56546243 - B3A SINE B2 -15 201 1 9 1100 376 342 52 19 chr9 67530305 67530460 -56545712 - B3 SINE B2 -46 170 11 1 1100 242 247 0 13 chr9 67530641 67530719 -56545453 + GA-rich Low_complexity Low_complexity 4 80 0 1 1100 1007 234 55 55 chr9 67531458 67531747 -56544425 + B4A SINE B4 4 292 0 1 1100 346 229 16 0 chr9 67531748 67531870 -56544302 + (CA)n Simple_repeat Simple_repeat 2 125 0 1 1100 786 144 0 50 chr9 67531990 67532129 -56544043 - B1_Mus2 SINE Alu -7 140 9 1 1100 400 271 13 77 chr9 67532129 67532146 -56544026 - ID_B1 SINE B4 -7 217 72 1 1100 387 219 0 40 chr9 67532314 67532414 -56543758 - RSINE1 SINE B4 -62 103 8 1 1100 363 243 16 14 chr9 67532774 67532872 -56543300 - B1_Mus1 SINE Alu 0 117 13 1 1100 2677 110 14 10 chr9 67532985 67533398 -56542774 - RLTR9F LTR ERVK 0 415 1 1 1100 1003 212 19 10 chr9 67533672 67533881 -56542291 - B3 SINE B2 -5 211 1 1 1100 2299 92 33 6 chr9 67534076 67534435 -56541737 - LTRIS4 LTR ERV1 -17 490 122 1 1100 287 95 0 0 chr9 67534443 67534485 -56541687 - MuRRS4-int LTR ERV1 0 5063 5022 1 1100 339 260 45 130 chr9 67534521 67534698 -56541474 + RSINE1 SINE B4 3 164 -1 1 1100 544 165 18 35 chr9 67534921 67535034 -56541138 - B1_Mus1 SINE Alu -1 147 37 1 1100 254 98 0 24 chr9 67535208 67535250 -56540922 + URR1B DNA MER1_type 185 225 0 1 1100 1671 75 0 0 chr9 67535338 67535552 -56540620 - L1_Mus2 LINE L1 -1 6565 6352 1 1100 663 172 94 0 chr9 67535575 67535703 -56540469 + B3 SINE B2 2 141 -75 1 1100 25 31 0 0 chr9 67535805 67535837 -56540335 + AT_rich Low_complexity Low_complexity 1 32 0 1 1100 8147 39 16 3 chr9 67536120 67537139 -56539033 - L1Md_F2 LINE L1 -11 6571 5542 1 1100 225 0 0 0 chr9 67537142 67537167 -56539005 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1100 708 84 19 0 chr9 67537167 67537274 -56538898 - B2_Mm2 SINE B2 -40 155 47 1 1100 213 146 0 0 chr9 67537329 67537377 -56538795 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1100 587 190 56 14 chr9 67537439 67537583 -56538589 - RMER1C Other Other -1 1341 1192 1 1100 411 21 0 0 chr9 67538825 67538873 -56537299 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1100 198 0 0 0 chr9 67539740 67539762 -56536410 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1100 621 157 0 0 chr9 67540196 67540311 -56535861 + (TG)n Simple_repeat Simple_repeat 1 115 0 1 1100 441 0 0 0 chr9 67542004 67542053 -56534119 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1100 696 139 61 15 chr9 67542333 67542464 -56533708 + B1_Mur3 SINE Alu 13 149 0 1 1100 324 248 97 83 chr9 67542334 67542479 -56533693 + B4A SINE B4 99 245 -47 1 1100 270 89 40 0 chr9 67542573 67542623 -56533549 - MTD LTR MaLR -24 395 312 1 1100 356 281 30 38 chr9 67542900 67543033 -56533139 + MT2B LTR ERVL 145 276 -325 1 1100 547 206 78 16 chr9 67542934 67543062 -56533110 + B1_Mus1 SINE Alu 13 148 0 1 1100 845 210 202 22 chr9 67543126 67543403 -56532769 - MTD LTR MaLR -92 327 1 1 1100 1600 296 80 39 chr9 67543521 67544447 -56531725 + L1M2 LINE L1 3115 4078 -2065 1 1100 1256 148 15 10 chr9 67544448 67544653 -56531519 + B3 SINE B2 1 206 -10 1 1100 472 249 22 67 chr9 67544752 67545010 -56531162 + MTEa LTR MaLR 107 359 -20 1 1100 772 283 118 55 chr9 67545061 67545644 -56530528 + L1M2 LINE L1 4124 4743 -1400 1 1100 221 341 0 24 chr9 67549737 67549821 -56526351 + ID4_ SINE ID 2 83 0 1 1100 816 198 63 42 chr9 67550502 67550692 -56525480 - B2_Mm2 SINE B2 -1 194 1 1 1100 25 0 0 0 chr9 67550702 67550727 -56525445 + AT_rich Low_complexity Low_complexity 1 25 0 1 1100 410 162 15 0 chr9 67552325 67552393 -56523779 + URR1B DNA MER1_type 6 74 -151 1 1100 1207 126 134 15 chr9 67552765 67552966 -56523206 + URR1B DNA MER1_type 1 225 0 1 1100 740 152 14 57 chr9 67553576 67553716 -56522456 - B1_Mur3 SINE Alu -15 134 1 1 1100 744 181 0 17 chr9 67554625 67554799 -56521373 + CT-rich Low_complexity Low_complexity 1 171 0 1 1100 348 319 182 18 chr9 67555935 67556155 -56520017 + L1M2 LINE L1 4742 4997 -1146 1 1100 427 325 6 12 chr9 67557272 67557440 -56518732 + L1M2 LINE L1 5593 5759 -412 1 1100 180 0 0 0 chr9 67557530 67557550 -56518622 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1100 237 65 0 0 chr9 67558873 67558904 -56517268 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1100 243 318 16 0 chr9 67560341 67560404 -56515768 - Cheshire DNA MER1_type -4 2416 2353 1 1100 315 0 0 0 chr9 67560872 67560907 -56515265 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1100 216 0 0 0 chr9 67561212 67561236 -56514936 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1100 189 107 0 0 chr9 67561617 67561645 -56514527 + (CCCCG)n Simple_repeat Simple_repeat 2 29 0 1 1100 27 0 0 0 chr9 67562925 67562952 -56513220 + AT_rich Low_complexity Low_complexity 1 27 0 1 1100 240 86 0 0 chr9 67564299 67564334 -56511838 + (CCA)n Simple_repeat Simple_repeat 1 35 0 1 1100 731 344 31 31 chr9 67567065 67567353 -56508819 + B4A SINE B4 1 288 -4 1 1100 1241 212 25 199 chr9 67568159 67568607 -56507565 + ORR1D2 LTR MaLR 1 370 0 1 1100 343 283 80 0 chr9 67568898 67569011 -56507161 - RMER30 DNA MER1_type -1 201 80 1 1100 488 272 122 33 chr9 67571391 67571661 -56504511 - L1MB5 LINE L1 0 6174 5881 1 1100 382 282 30 24 chr9 67571977 67572144 -56504028 - L1M1 LINE L1 -763 5537 5370 1 1100 466 312 128 41 chr9 67572174 67572642 -56503530 - L1MB5 LINE L1 -853 5293 4785 1 1100 445 233 73 22 chr9 67574134 67574270 -56501902 + MER68 LTR ERVL 409 551 -12 1 1100 324 64 0 0 chr9 67576335 67576382 -56499790 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 1 1100 270 0 0 0 chr9 67578216 67578246 -56497926 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1100 236 211 77 0 chr9 67578693 67578745 -56497427 + Charlie4z DNA MER1_type 9 64 -103 1 1100 747 210 109 16 chr9 67580873 67581057 -56495115 + RMER1C Other Other 1088 1288 -54 1 1100 228 35 0 0 chr9 67581831 67581860 -56494312 + (GGGTG)n Simple_repeat Simple_repeat 4 32 0 1 1100 21 36 0 0 chr9 67583944 67583972 -56492200 + AT_rich Low_complexity Low_complexity 1 28 0 1 1100 327 319 33 21 chr9 67586011 67586161 -56490011 + MIRb SINE MIR 42 196 -72 1 1100 457 202 13 0 chr9 67586526 67586605 -56489567 - ID4_ SINE ID -3 80 1 1 1100 381 321 37 86 chr9 67587320 67587340 -56488832 - L1MC LINE L1 -1901 4245 4227 1 1100 226 295 33 67 chr9 67587340 67587460 -56488712 - PB1D10 SINE Alu 0 117 2 1 1100 381 321 37 86 chr9 67587460 67587593 -56488579 - L1MC LINE L1 -1920 4226 4102 1 1100 258 81 0 0 chr9 67587593 67587630 -56488542 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 1100 381 321 35 84 chr9 67587630 67587862 -56488310 - L1MC LINE L1 -2042 4104 3882 1 1100 244 139 0 0 chr9 67587972 67588008 -56488164 - B3A SINE B2 -162 36 1 1 1100 396 0 0 0 chr9 67588166 67588210 -56487962 + (CAG)n Simple_repeat Simple_repeat 1 44 0 1 1100 234 0 0 0 chr9 67588307 67588333 -56487839 + (CAG)n Simple_repeat Simple_repeat 1 26 0 1 1100 480 207 105 123 chr9 67588798 67588969 -56487203 + RMER30 DNA MER1_type 34 201 -1 1 1100 1148 68 7 0 chr9 67589872 67590018 -56486154 + B1_Mus1 SINE Alu 1 147 -1 1 1100 894 174 134 15 chr9 67590214 67590475 -56485697 - ORR1D1 LTR MaLR -8 370 50 1 1100 217 191 24 0 chr9 67590873 67590915 -56485257 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1100 244 184 131 95 chr9 67590983 67591067 -56485105 + MTE2a LTR MaLR 290 376 -3 1 1100 455 0 18 0 chr9 67591834 67591889 -56484283 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1100 464 231 0 0 chr9 67591889 67591993 -56484179 - PB1D9 SINE Alu -12 108 5 1 1100 325 250 42 0 chr9 67592268 67592340 -56483832 + PB1D7 SINE Alu 15 89 -31 1 1100 1714 156 78 6 chr9 67592473 67592808 -56483364 - RLTR15 LTR ERVK 0 359 1 1 1100 6544 231 78 40 chr9 67592808 67594809 -56481363 - MYSERV16_I-int LTR ERVK -1 2325 249 1 1100 755 221 14 113 chr9 67594809 67595048 -56481124 + RMER19C LTR ERVK 1 279 -332 1 1100 1346 245 69 97 chr9 67596537 67596948 -56479224 + RMER19C LTR ERVK 253 676 -226 1 1100 1097 224 16 69 chr9 67596951 67597288 -56478884 - MYSERV16_I-int LTR ERVK -2075 251 1 1 1100 513 256 15 67 chr9 67597397 67597531 -56478641 - B1_Mur3 SINE Alu -2 147 21 1 1100 312 196 47 158 chr9 67597967 67598094 -56478078 - MYSERV6-int LTR ERVK -2285 6674 6562 1 1100 888 254 5 30 chr9 67598096 67598295 -56477877 - RLTR41 LTR ERV1 -2 444 251 1 1100 1842 235 24 26 chr9 67598303 67598727 -56477445 - MuRRS4-int LTR ERV1 -1108 3955 3533 1 1100 553 305 73 92 chr9 67598906 67599332 -56476840 - RLTR6-int LTR ERV1 -3162 4444 4027 1 1100 1146 292 86 69 chr9 67599387 67600364 -56475808 - RLTR6-int LTR ERV1 -5191 2415 1423 1 1100 1736 197 125 12 chr9 67601519 67601920 -56474252 - RLTR41 LTR ERV1 0 446 1 1 1100 1064 78 43 0 chr9 67601953 67602094 -56474078 + B1_Mus1 SINE Alu 2 148 0 1 1100 312 274 0 66 chr9 67602481 67602589 -56473583 - B1_Mur3 SINE Alu -48 102 3 1 1100 2099 133 20 0 chr9 67603099 67603451 -56472721 - RLTR15 LTR ERVK 0 359 1 1 1100 1014 260 0 0 chr9 67603451 67603647 -56472525 - B3 SINE B2 -20 196 1 1 1100 410 138 147 78 chr9 67604374 67604476 -56471696 + PB1D10 SINE Alu 7 115 -2 1 1100 243 277 157 10 chr9 67604587 67604689 -56471483 + MIRb SINE MIR 88 204 -64 1 1100 558 291 128 108 chr9 67605187 67605760 -56470412 + RLTR18 LTR ERVK 27 611 -5 1 1100 441 234 133 0 chr9 67605803 67605931 -56470241 + B1F SINE Alu 1 145 -4 1 1100 1217 42 7 0 chr9 67606172 67606316 -56469856 - B1_Mm SINE Alu -1 146 2 1 1100 36 53 0 0 chr9 67608059 67608116 -56468056 + GC_rich Low_complexity Low_complexity 1 57 0 1 1100 833 298 42 34 chr9 67608949 67609213 -56466959 + B4 SINE B4 5 270 -22 1 1100 702 211 65 11 chr9 67609673 67609861 -56466311 - B3 SINE B2 -1 194 1 1 1100 636 272 30 40 chr9 67609886 67610085 -56466087 - B3A SINE B2 0 198 2 1 1100 216 0 0 0 chr9 67610486 67610510 -56465662 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1100 458 321 92 74 chr9 67610813 67610876 -56465296 - B4A SINE B4 0 292 246 2 1100 2921 105 87 35 chr9 67610876 67611369 -56464803 + MURVY-LTR LTR ERV1 1 519 0 2 1100 458 321 92 74 chr9 67611369 67611588 -56464584 - B4A SINE B4 -47 245 5 2 1100 207 443 13 20 chr9 67611795 67611947 -56464225 + L2b LINE L2 3222 3372 -3 2 1100 1374 281 122 12 chr9 67612118 67612543 -56463629 + MTEa-int LTR MaLR 880 1351 -229 2 1100 439 273 160 35 chr9 67612595 67612739 -56463433 - RSINE1 SINE B4 -2 163 2 2 1100 851 257 65 0 chr9 67612739 67612953 -56463219 + MTEa-int LTR MaLR 1344 1571 -9 2 1100 759 164 64 0 chr9 67612964 67613104 -56463068 - B1_Mur4 SINE Alu 0 150 2 2 1100 339 262 0 0 chr9 67613120 67613200 -56462972 + MTEa LTR MaLR 5 84 -295 2 1100 603 127 17 83 chr9 67613159 67613279 -56462893 + B1_Mus1 SINE Alu 36 147 -1 2 1100 859 102 15 0 chr9 67613279 67613416 -56462756 + (GA)n Simple_repeat Simple_repeat 2 140 0 2 1100 728 276 61 31 chr9 67613439 67613667 -56462505 + MTEa LTR MaLR 99 333 -46 2 1100 207 0 0 0 chr9 67614063 67614086 -56462086 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1100 297 0 0 0 chr9 67614271 67614304 -56461868 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1100 2432 184 52 62 chr9 67614821 67615383 -56460789 + RLTR20B3 LTR ERVK 6 561 -16 2 1100 217 242 306 0 chr9 67615891 67615953 -56460219 + B4A SINE B4 1 81 -211 2 1100 200 347 23 76 chr9 67616641 67616772 -56459400 + L2b LINE L2 3237 3360 -15 2 1100 330 26 0 0 chr9 67617134 67617173 -56458999 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2 1100 1152 194 194 13 chr9 67617805 67618119 -56458053 - ORR1D1 LTR MaLR -3 371 1 2 1100 402 247 11 0 chr9 67618484 67618573 -56457599 - PB1D10 SINE Alu -21 96 7 2 1100 1102 59 0 7 chr9 67618635 67618771 -56457401 + B1_Mus1 SINE Alu 2 136 -12 2 1100 1026 72 13 7 chr9 67618776 67618930 -56457242 + (GAA)n Simple_repeat Simple_repeat 2 156 0 2 1100 180 0 0 0 chr9 67619014 67619034 -56457138 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1100 281 261 31 0 chr9 67619043 67619108 -56457064 - ID_B1 SINE B4 -34 190 124 2 1100 542 273 104 26 chr9 67619633 67619825 -56456347 - B3 SINE B2 -3 213 7 2 1100 273 222 40 53 chr9 67619838 67619905 -56456267 - B4 SINE B4 -74 218 153 2 1100 966 286 26 44 chr9 67619905 67620176 -56455996 + B4A SINE B4 4 269 -23 2 1100 342 98 0 0 chr9 67620178 67620229 -56455943 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1100 409 313 52 0 chr9 67620384 67620499 -56455673 + ID_B1 SINE B4 83 203 -21 2 1100 441 66 0 0 chr9 67620530 67620591 -56455581 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1100 288 0 0 0 chr9 67620591 67620622 -56455550 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1100 230 204 259 0 chr9 67621288 67621342 -56454830 + tRNA-Ala-GCA tRNA tRNA 2 69 -6 2 1100 1105 269 3 109 chr9 67621356 67621669 -56454503 + B4A SINE B4 5 284 -8 2 1100 774 188 34 20 chr9 67623505 67623652 -56452520 + B1_Mur3 SINE Alu 1 149 0 2 1100 213 94 0 0 chr9 67623680 67623712 -56452460 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 2 1100 1755 204 24 19 chr9 67623794 67624164 -56452008 - ORR1D1 LTR MaLR -2 372 1 2 1100 3045 40 8 11 chr9 67624452 67624833 -56451339 - L1_Mus3 LINE L1 0 6638 6259 2 1100 230 234 106 30 chr9 67625039 67625105 -56451067 - B4A SINE B4 -153 139 69 2 1100 242 250 0 71 chr9 67625084 67625140 -56451032 - ID4 SINE ID -26 57 6 2 1100 537 131 0 0 chr9 67625429 67625536 -56450636 + (GA)n Simple_repeat Simple_repeat 2 108 0 2 1100 960 264 5 5 chr9 67625834 67626036 -56450136 + B3 SINE B2 15 216 0 2 1100 857 58 39 50 chr9 67626849 67627031 -56449141 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1100 861 108 42 0 chr9 67627049 67627215 -56448957 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 2 1100 603 216 95 0 chr9 67627215 67627331 -56448841 - B1F SINE Alu -16 133 7 2 1100 245 355 0 0 chr9 67627277 67627353 -56448819 - B4 SINE B4 -147 145 70 2 1100 186 43 0 0 chr9 67627388 67627411 -56448761 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 1100 1104 104 0 0 chr9 67627416 67627560 -56448612 - B1_Mur4 SINE Alu -6 144 1 2 1100 591 281 21 48 chr9 67627591 67627778 -56448394 - B3A SINE B2 -16 182 1 2 1100 1781 164 75 12 chr9 67627817 67628163 -56448009 - MTD LTR MaLR -15 404 37 2 1100 2017 90 135 0 chr9 67628316 67628604 -56447568 - ORR1A2 LTR MaLR 0 327 1 2 1100 1896 251 46 26 chr9 67629039 67629538 -56446634 - Lx8 LINE L1 -1 7472 6964 2 1100 646 162 15 0 chr9 67629554 67629690 -56446482 + (TCTA)n Simple_repeat Simple_repeat 2 139 0 2 1100 234 333 144 27 chr9 67630150 67630338 -56445834 + MIRb SINE MIR 16 225 -43 2 1100 343 291 52 0 chr9 67631583 67631717 -56444455 - Lx9 LINE L1 -22 7622 7482 2 1100 29 47 0 0 chr9 67631794 67631837 -56444335 + AT_rich Low_complexity Low_complexity 1 43 0 2 1100 1136 228 10 0 chr9 67631839 67632045 -56444127 - B3 SINE B2 0 216 9 2 1100 633 171 247 23 chr9 67632068 67632242 -56443930 - B3 SINE B2 0 216 4 2 1100 225 94 0 0 chr9 67632487 67632519 -56443653 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1100 471 48 0 0 chr9 67632521 67632583 -56443589 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1100 319 0 0 61 chr9 67633043 67633092 -56443080 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 1101 333 0 0 0 chr9 67633157 67633194 -56442978 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1101 342 0 0 0 chr9 67633194 67633231 -56442941 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1101 402 279 30 18 chr9 67633789 67633953 -56442219 + L1MB7 LINE L1 5999 6164 -20 2 1101 409 278 23 31 chr9 67634426 67634556 -56441616 + MIRb SINE MIR 66 194 -74 2 1101 269 260 0 0 chr9 67635093 67635143 -56441029 - B4 SINE B4 -171 121 72 2 1101 417 186 71 24 chr9 67635175 67635302 -56440870 - Lx9 LINE L1 -1 7643 7511 2 1101 198 150 0 0 chr9 67635304 67635344 -56440828 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1101 1873 172 38 6 chr9 67635347 67635688 -56440484 + Lx9 LINE L1 6831 7286 -358 2 1101 1044 246 104 37 chr9 67635940 67636295 -56439877 - MTE2a LTR MaLR 0 379 1 2 1101 863 218 47 16 chr9 67636423 67636614 -56439558 - B3 SINE B2 -19 197 1 2 1101 690 279 35 6 chr9 67636650 67636823 -56439349 + B3A SINE B2 21 198 0 2 1101 249 341 111 23 chr9 67636873 67637089 -56439083 + L3 LINE CR1 3342 3576 -913 2 1101 813 266 44 64 chr9 67637166 67637463 -56438709 - B4A SINE B4 -1 291 1 2 1101 938 272 61 39 chr9 67637616 67637886 -56438286 + MTEa LTR MaLR 37 313 -66 2 1101 180 0 0 0 chr9 67637886 67637906 -56438266 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 2 1101 265 357 50 45 chr9 67637976 67638155 -56438017 + L3 LINE CR1 3732 3911 -578 2 1101 1846 268 60 37 chr9 67638407 67639181 -56436991 + RMER13A LTR ERVK 14 847 -13 2 1101 3390 35 10 0 chr9 67639717 67640113 -56436059 - MTB LTR MaLR 0 400 1 2 1101 218 325 137 13 chr9 67640431 67640585 -56435587 + MIRb SINE MIR 18 188 -88 2 1101 516 32 0 0 chr9 67640676 67640738 -56435434 + (TCC)n Simple_repeat Simple_repeat 2 63 0 2 1101 441 0 0 0 chr9 67640738 67640787 -56435385 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1101 435 162 26 71 chr9 67640841 67640954 -56435218 - B1F2 SINE Alu -2 147 40 2 1101 894 122 0 0 chr9 67640974 67641154 -56435018 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 2 1101 264 111 0 143 chr9 67641160 67641223 -56434949 - B1_Mus2 SINE Alu -92 55 2 2 1101 251 296 10 10 chr9 67642826 67642925 -56433247 + L1_Rod LINE L1 566 664 -6508 2 1101 195 42 0 0 chr9 67643437 67643461 -56432711 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 2 1101 476 251 220 43 chr9 67643948 67644155 -56432017 + B4A SINE B4 47 290 -2 2 1101 203 61 30 0 chr9 67644202 67644235 -56431937 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1101 983 251 55 11 chr9 67644394 67644668 -56431504 + B4 SINE B4 2 287 -5 2 1101 565 149 92 118 chr9 67645540 67645692 -56430480 + B1_Mur1 SINE Alu 1 148 -1 2 1101 346 341 56 3 chr9 67645810 67645943 -56430229 + B1F SINE Alu 1 139 -10 2 1101 435 38 0 0 chr9 67645943 67645996 -56430176 + (GGA)n Simple_repeat Simple_repeat 3 55 0 2 1101 260 260 10 68 chr9 67646058 67646161 -56430011 - MER96B DNA hAT -320 97 1 2 1101 25 41 0 20 chr9 67646170 67646189 -56429983 + AT_rich Low_complexity Low_complexity 1 19 0 2 1101 1149 95 0 0 chr9 67646189 67646337 -56429835 + B1_Mus1 SINE Alu 1 148 0 2 1101 25 41 0 20 chr9 67646337 67646367 -56429805 + AT_rich Low_complexity Low_complexity 1 30 0 2 1101 521 286 60 76 chr9 67646377 67646627 -56429545 - Lx8 LINE L1 -53 7420 7175 2 1101 428 259 34 17 chr9 67646642 67646760 -56429412 - RSINE1 SINE B4 -35 130 11 2 1101 23 0 0 0 chr9 67647569 67647592 -56428580 + AT_rich Low_complexity Low_complexity 1 23 0 2 1101 689 316 6 22 chr9 67647592 67647770 -56428402 - ID_B1 SINE B4 -37 187 13 2 1101 793 241 59 128 chr9 67647919 67648223 -56427949 - B4A SINE B4 -2 290 8 2 1101 2322 254 80 121 chr9 67648700 67649312 -56426860 - RCHARR1 DNA MER1_type 0 974 443 2 1101 1471 69 16 0 chr9 67649312 67649500 -56426672 + B2_Mm2 SINE B2 2 192 -3 2 1101 2322 254 80 121 chr9 67649500 67649897 -56426275 - RCHARR1 DNA MER1_type -532 442 6 2 1101 1139 62 0 20 chr9 67649908 67650040 -56426132 + B1_Mm SINE Alu 3 134 -13 2 1101 198 0 0 0 chr9 67650040 67650062 -56426110 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 2 1101 1139 62 0 20 chr9 67650062 67650077 -56426095 + B1_Mm SINE Alu 135 147 0 2 1101 209 108 27 0 chr9 67650080 67650117 -56426055 + (GGAGAA)n Simple_repeat Simple_repeat 3 40 0 3 1101 675 301 26 16 chr9 67650128 67650317 -56425855 + B3A SINE B2 4 194 -4 3 1101 4900 59 5 2 chr9 67650328 67650935 -56425237 - L1_Mus1 LINE L1 0 6567 5959 3 1101 319 242 206 29 chr9 67651317 67651419 -56424753 + LTR33A LTR ERVL 77 196 -324 3 1101 287 257 25 86 chr9 67652114 67652195 -56423977 - B4 SINE B4 -14 278 203 3 1101 2266 169 196 12 chr9 67652195 67652704 -56423468 + RMER19C LTR ERVK 1 603 -8 3 1101 361 317 56 24 chr9 67652717 67652843 -56423329 - B4 SINE B4 -162 130 1 3 1101 208 260 0 105 chr9 67653509 67653681 -56422491 + (CAGAGA)n Simple_repeat Simple_repeat 3 156 0 3 1101 239 148 0 147 chr9 67653607 67653797 -56422375 + GA-rich Low_complexity Low_complexity 3 164 0 3 1101 513 47 0 0 chr9 67654582 67654646 -56421526 + (ATGGTG)n Simple_repeat Simple_repeat 4 67 0 3 1101 256 364 0 15 chr9 67655442 67655509 -56420663 - B4A SINE B4 -3 289 224 3 1101 429 54 0 0 chr9 67655509 67655565 -56420607 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 3 1101 753 163 28 28 chr9 67655611 67655756 -56420416 - B1_Mur4 SINE Alu -4 146 2 3 1101 707 248 139 20 chr9 67655763 67655965 -56420207 - B4A SINE B4 -66 226 1 3 1101 238 291 75 25 chr9 67656411 67656531 -56419641 - MLT1K LTR MaLR 0 595 470 3 1101 907 297 94 84 chr9 67656783 67657198 -56418974 - MTD LTR MaLR 0 419 1 3 1101 206 254 0 33 chr9 67657318 67657379 -56418793 + GA-rich Low_complexity Low_complexity 2 60 0 3 1101 467 241 0 0 chr9 67657954 67658037 -56418135 - RMER30 DNA MER1_type -119 83 1 3 1101 881 217 26 5 chr9 67658442 67658632 -56417540 - B3 SINE B2 -21 195 2 3 1101 530 306 51 79 chr9 67659272 67659488 -56416684 + B4A SINE B4 81 290 -2 3 1101 283 253 12 74 chr9 67659612 67659693 -56416479 - ID4_ SINE ID -7 76 1 3 1101 492 227 4 11 chr9 67659707 67659815 -56416357 - PB1D10 SINE Alu -5 115 6 3 1101 376 289 68 54 chr9 67659907 67660105 -56416067 - MIR SINE MIR -17 251 48 3 1101 24 32 0 0 chr9 67660121 67660152 -56416020 + AT_rich Low_complexity Low_complexity 1 31 0 3 1101 798 226 9 76 chr9 67660155 67660366 -56415806 - B3A SINE B2 -1 197 1 3 1101 2501 165 73 30 chr9 67660415 67660530 -56415642 + RMER15 LTR ERVL 1 115 -460 3 1101 198 0 0 0 chr9 67660530 67660552 -56415620 + (CACCC)n Simple_repeat Simple_repeat 1 22 0 3 1101 2501 165 73 30 chr9 67660552 67660904 -56415268 + RMER15 LTR ERVL 116 488 -87 3 1101 925 129 7 7 chr9 67660923 67661064 -56415108 + ORR1B2 LTR MaLR 219 359 -8 3 1101 398 205 0 33 chr9 67661066 67661157 -56415015 + RMER15 LTR ERVL 488 575 0 3 1101 1752 0 0 0 chr9 67661314 67661510 -56414662 - L1Md_T LINE L1 0 6582 6387 3 1101 933 239 85 29 chr9 67662069 67662341 -56413831 - B4 SINE B4 -1 291 5 3 1101 789 207 112 20 chr9 67662366 67662563 -56413609 - B3 SINE B2 0 216 2 3 1101 543 16 0 0 chr9 67663389 67663453 -56412719 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1101 342 115 0 0 chr9 67663543 67663595 -56412577 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1101 1167 68 0 13 chr9 67663666 67663815 -56412357 - B1_Mus1 SINE Alu -1 147 1 3 1101 1271 241 108 68 chr9 67663981 67664480 -56411692 - RLTR11A2 LTR ERVK -8 519 1 3 1101 384 292 105 23 chr9 67664482 67664615 -56411557 + L2a LINE L2 3251 3394 -32 3 1101 679 250 45 34 chr9 67664663 67664841 -56411331 + B4 SINE B4 46 225 -67 3 1101 246 22 0 80 chr9 67664843 67664893 -56411279 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 3 1101 1250 41 0 0 chr9 67664897 67665044 -56411128 - B1_Mus2 SINE Alu 0 147 1 3 1101 1039 204 35 0 chr9 67665093 67665294 -56410878 + B3 SINE B2 4 211 -5 3 1101 204 40 0 0 chr9 67665979 67666004 -56410168 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1101 210 244 0 0 chr9 67667225 67667270 -56408902 + ID SINE ID 8 52 -172 3 1101 1992 187 25 17 chr9 67667270 67667673 -56408499 + MTD LTR MaLR 14 419 0 3 1101 445 250 9 9 chr9 67667697 67667806 -56408366 + ID_B1 SINE B4 71 179 -45 3 1101 336 102 0 0 chr9 67667806 67667855 -56408317 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1101 452 344 62 31 chr9 67667958 67668288 -56407884 + MTEb LTR MaLR 14 376 -3 3 1101 213 39 0 0 chr9 67668628 67668654 -56407518 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1101 285 287 9 38 chr9 67668907 67669012 -56407160 - B4 SINE B4 -1 291 190 3 1101 351 197 14 0 chr9 67669023 67669094 -56407078 - B4 SINE B4 -219 73 2 3 1101 22 56 0 0 chr9 67669241 67669277 -56406895 + AT_rich Low_complexity Low_complexity 1 36 0 3 1101 275 263 0 0 chr9 67669560 67669617 -56406555 - B4A SINE B4 -225 67 11 3 1101 30 0 0 0 chr9 67669956 67669986 -56406186 + AT_rich Low_complexity Low_complexity 1 30 0 3 1101 300 206 109 40 chr9 67670574 67670675 -56405497 + MT2B LTR ERVL 162 269 -332 3 1101 627 207 0 0 chr9 67670593 67670709 -56405463 + B1_Mur1 SINE Alu 34 149 0 3 1101 487 180 0 18 chr9 67670718 67670831 -56405341 + GA-rich Low_complexity Low_complexity 2 112 0 3 1101 914 280 94 36 chr9 67671344 67671896 -56404276 + L1MCb LINE L1 611 1194 -4851 3 1101 225 341 117 14 chr9 67672532 67672746 -56403426 + MER65D LTR ERV1 238 473 0 3 1101 501 254 20 98 chr9 67672781 67672934 -56403238 + ID_B1 SINE B4 81 221 -3 3 1101 314 256 83 64 chr9 67672934 67673138 -56403034 + L1MCb LINE L1 2313 2520 -4231 3 1101 272 305 74 51 chr9 67673161 67673399 -56402773 + L1ME1 LINE L1 5783 6026 -138 3 1101 749 204 0 83 chr9 67673421 67673613 -56402559 + B3A SINE B2 20 195 -3 3 1101 287 325 129 64 chr9 67674035 67674206 -56401966 - RMER30 DNA MER1_type 0 202 21 3 1101 733 309 99 20 chr9 67674526 67674869 -56401303 - MTE2b LTR MaLR -7 372 3 3 1101 216 209 0 0 chr9 67674891 67674934 -56401238 + T-rich Low_complexity Low_complexity 1 43 0 3 1101 933 231 0 11 chr9 67675019 67675203 -56400969 - B3A SINE B2 -16 182 1 3 1101 500 276 69 43 chr9 67675318 67675549 -56400623 + MER2 DNA MER2_type 83 319 -26 3 1101 465 103 0 0 chr9 67675609 67675677 -56400495 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1101 241 105 0 26 chr9 67675680 67675719 -56400453 - PB1D10 SINE Alu -9 108 71 3 1101 242 247 214 0 chr9 67675732 67675821 -56400351 - PB1D7 SINE Alu -8 112 5 3 1101 533 257 14 28 chr9 67675939 67676083 -56400089 + ID_B1 SINE B4 82 223 -1 3 1101 760 291 14 9 chr9 67677553 67677775 -56398397 - ID_B1 SINE B4 -1 223 1 3 1101 245 155 85 17 chr9 67677829 67677888 -56398284 + MIR SINE MIR 112 174 -88 3 1101 312 276 0 132 chr9 67677892 67678013 -56398159 - RSINE1 SINE B4 -40 125 21 3 1101 198 0 0 0 chr9 67680490 67680512 -56395660 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1101 404 167 48 10 chr9 67680588 67680691 -56395481 + L1ME3 LINE L1 6026 6132 -30 3 1101 201 283 164 23 chr9 67681384 67681561 -56394611 + MIRb SINE MIR 26 227 -41 3 1101 727 212 19 96 chr9 67681806 67681858 -56394314 - B3A SINE B2 -2 196 157 3 1101 189 0 0 0 chr9 67681858 67681879 -56394293 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1101 727 212 19 96 chr9 67681879 67682035 -56394137 - B3A SINE B2 -42 156 4 3 1101 506 264 25 19 chr9 67682937 67683095 -56393077 + L1MA6 LINE L1 6053 6211 -89 3 1101 1269 92 6 0 chr9 67683126 67683285 -56392887 + B2_Mm1a SINE B2 1 160 -33 3 1101 183 42 0 0 chr9 67683285 67683309 -56392863 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 3 1101 1269 92 6 0 chr9 67683309 67683322 -56392850 + B2_Mm1a SINE B2 161 173 -20 3 1101 1305 66 65 5 chr9 67683328 67683512 -56392660 + B2_Mm2 SINE B2 1 195 0 3 1101 1216 130 26 77 chr9 67683718 67683952 -56392220 + URR1A DNA MER1_type 5 226 0 3 1101 468 51 0 0 chr9 67684048 67684107 -56392065 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1101 910 208 91 0 chr9 67684280 67684477 -56391695 - B3 SINE B2 -1 215 1 3 1101 1382 197 51 40 chr9 67684565 67684935 -56391237 - Lx9 LINE L1 -2 7642 7269 3 1101 869 158 0 0 chr9 67684951 67685084 -56391088 - B1_Mur4 SINE Alu -17 133 1 3 1101 374 285 131 0 chr9 67685837 67685967 -56390205 - MTE2b LTR MaLR -20 359 213 3 1101 456 51 0 0 chr9 67685983 67686042 -56390130 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1101 318 123 0 0 chr9 67686042 67686099 -56390073 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1101 741 271 34 5 chr9 67686101 67686309 -56389863 - MTE2b LTR MaLR -165 214 1 3 1101 327 225 56 0 chr9 67686336 67686407 -56389765 - MTE2b LTR MaLR -304 75 1 3 1101 273 103 0 23 chr9 67687359 67687407 -56388765 - B1_Mur2 SINE Alu -51 99 52 3 1101 288 77 0 0 chr9 67687455 67687494 -56388678 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1101 586 252 32 19 chr9 67687533 67687687 -56388485 - RSINE1 SINE B4 -6 159 4 3 1101 313 194 75 0 chr9 67687711 67687778 -56388394 - ID_B1 SINE B4 -7 217 146 3 1101 529 234 55 37 chr9 67687786 67687950 -56388222 - ID_B1 SINE B4 -34 190 24 3 1101 486 98 0 0 chr9 67687959 67688041 -56388131 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1101 237 33 0 0 chr9 67688116 67688146 -56388026 + (CGGGG)n Simple_repeat Simple_repeat 2 31 0 3 1101 325 199 180 96 chr9 67689174 67689352 -56386820 + MER33 DNA MER1_type 36 228 -96 3 1101 1159 68 0 0 chr9 67690293 67690440 -56385732 - B1_Mus2 SINE Alu 0 147 1 3 1101 347 0 23 0 chr9 67690559 67690602 -56385570 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 3 1101 753 77 10 0 chr9 67691680 67691784 -56384388 + B2_Mm2 SINE B2 2 106 -89 3 1101 581 281 6 35 chr9 67691869 67692039 -56384133 + RSINE1 SINE B4 1 165 0 3 1101 189 0 0 0 chr9 67692076 67692097 -56384075 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3 1101 282 160 0 0 chr9 67692154 67692204 -56383968 + CT-rich Low_complexity Low_complexity 3 52 0 4 1101 729 148 56 62 chr9 67692206 67692350 -56383822 - B1_Mur4 SINE Alu -7 143 1 4 1101 205 255 59 10 chr9 67692456 67692556 -56383616 + MIRm SINE MIR 61 174 -102 4 1101 851 215 9 79 chr9 67693990 67694217 -56381955 - B3 SINE B2 -5 211 1 4 1101 1770 216 17 66 chr9 67694249 67694779 -56381393 - RLTR20C LTR ERVK -30 504 1 4 1101 275 239 8 128 chr9 67696305 67696430 -56379742 - PB1D7 SINE Alu -1 119 10 4 1101 817 167 48 70 chr9 67696579 67696766 -56379406 - B3A SINE B2 -15 183 1 4 1101 858 91 0 0 chr9 67696792 67696913 -56379259 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 4 1101 817 59 244 0 chr9 67696925 67697060 -56379112 - L1_Mus1 LINE L1 0 6567 6400 4 1101 267 152 0 0 chr9 67697063 67697109 -56379063 + T-rich Low_complexity Low_complexity 1 46 0 4 1101 832 257 0 6 chr9 67698452 67698632 -56377540 - B3 SINE B2 -36 180 2 4 1101 608 239 83 27 chr9 67699042 67699209 -56376963 + B3 SINE B2 13 183 -33 4 1101 459 0 0 0 chr9 67699210 67699261 -56376911 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1101 256 261 193 0 chr9 67699436 67699555 -56376617 - B1_Mus1 SINE Alu -3 145 4 4 1101 1157 48 0 20 chr9 67699868 67700018 -56376154 + B1_Mm SINE Alu 1 147 0 4 1101 599 100 36 0 chr9 67702133 67702243 -56373929 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 4 1101 7124 233 39 28 chr9 67702408 67703092 -56373080 - Lx6 LINE L1 -2 7458 6742 4 1101 194 0 39 0 chr9 67703092 67703118 -56373054 + (CAT)n Simple_repeat Simple_repeat 2 28 0 4 1101 7124 233 39 28 chr9 67703118 67703672 -56372500 - Lx6 LINE L1 -719 6741 6184 4 1101 465 66 0 0 chr9 67703672 67703733 -56372439 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1101 7124 233 39 28 chr9 67703733 67704153 -56372019 - Lx6 LINE L1 -1277 6183 5781 4 1101 519 115 0 55 chr9 67704158 67704268 -56371904 + CT-rich Low_complexity Low_complexity 1 104 0 4 1101 1787 169 13 3 chr9 67704268 67704577 -56371595 - Lx6 LINE L1 -90 5790 5479 4 1101 29 28 0 0 chr9 67704837 67704873 -56371299 + AT_rich Low_complexity Low_complexity 1 36 0 4 1101 491 252 55 36 chr9 67704873 67705038 -56371134 - B3A SINE B2 -30 168 1 4 1101 763 223 95 11 chr9 67705352 67705542 -56370630 + B3 SINE B2 1 206 -10 4 1101 595 214 8 0 chr9 67705869 67705986 -56370186 - ID_B1 SINE B4 -34 190 73 4 1101 24 0 0 0 chr9 67707452 67707476 -56368696 + AT_rich Low_complexity Low_complexity 1 24 0 4 1101 491 118 0 0 chr9 67707780 67707856 -56368316 - B1_Mur4 SINE Alu -6 144 69 4 1101 370 194 120 20 chr9 67707969 67708069 -56368103 - PB1D9 SINE Alu -10 110 1 4 1101 297 232 14 28 chr9 67708007 67708078 -56368094 - B4 SINE B4 -144 148 79 4 1101 559 235 156 6 chr9 67708090 67708257 -56367915 - B3A SINE B2 -6 192 1 4 1101 885 160 0 20 chr9 67708797 67708944 -56367228 - B1_Mur4 SINE Alu -6 144 1 4 1101 624 91 0 0 chr9 67710266 67710354 -56365818 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1101 216 313 20 0 chr9 67710360 67710459 -56365713 + (CATATA)n Simple_repeat Simple_repeat 4 104 0 4 1101 622 243 118 0 chr9 67711012 67711181 -56364991 - URR1A DNA MER1_type 0 226 38 4 1101 1003 75 0 135 chr9 67711428 67711598 -56364574 + B1_Mus1 SINE Alu 2 148 0 4 1101 420 164 0 0 chr9 67713190 67713300 -56362872 + GA-rich Low_complexity Low_complexity 1 110 0 4 1101 506 155 35 0 chr9 67714458 67714574 -56361598 + (TA)n Simple_repeat Simple_repeat 2 121 0 4 1101 1400 306 113 54 chr9 67715652 67716921 -56359251 + Charlie1a DNA MER1_type 111 1454 -1 4 1101 231 36 0 0 chr9 67719674 67719702 -56356470 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1101 655 306 43 2 chr9 67719919 67720208 -56355964 + L1MA8 LINE L1 5612 5924 -247 4 1101 243 176 0 0 chr9 67720211 67720262 -56355910 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1101 281 231 0 15 chr9 67720710 67720776 -56355396 + PB1D10 SINE Alu 53 117 0 4 1101 37 39 0 0 chr9 67721137 67721188 -56354984 + AT_rich Low_complexity Low_complexity 1 51 0 4 1101 868 140 141 27 chr9 67721432 67721616 -56354556 - Lx5 LINE L1 0 7050 6846 4 1101 207 0 0 0 chr9 67722026 67722049 -56354123 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1101 294 100 50 0 chr9 67722064 67722124 -56354048 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1101 24 67 0 0 chr9 67722137 67722182 -56353990 + AT_rich Low_complexity Low_complexity 1 45 0 4 1101 728 154 8 31 chr9 67723070 67723197 -56352975 - B1F2 SINE Alu 0 149 26 4 1101 207 0 0 0 chr9 67723754 67723777 -56352395 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1101 602 259 38 0 chr9 67723805 67723936 -56352236 - RSINE1 SINE B4 -24 141 6 4 1101 709 61 71 0 chr9 67726635 67726733 -56349439 + B1_Mus2 SINE Alu 1 105 -42 4 1101 240 35 0 0 chr9 67726794 67726823 -56349349 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1101 221 267 50 0 chr9 67727208 67727268 -56348904 + CT-rich Low_complexity Low_complexity 6 68 0 4 1101 23 54 0 0 chr9 67727974 67728011 -56348161 + AT_rich Low_complexity Low_complexity 1 37 0 4 1101 417 218 0 82 chr9 67728467 67728662 -56347510 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1101 1420 181 159 16 chr9 67728671 67728986 -56347186 - Lx7 LINE L1 -265 7431 7072 4 1101 297 128 0 0 chr9 67729577 67729624 -56346548 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1101 423 261 22 0 chr9 67729625 67729717 -56346455 - RSINE1 SINE B4 -42 123 30 4 1101 709 262 24 14 chr9 67729745 67729954 -56346218 - B3 SINE B2 -4 212 2 4 1101 470 283 88 0 chr9 67730206 67730319 -56345853 - B1F1 SINE Alu -26 123 1 4 1101 1211 62 7 0 chr9 67730385 67730530 -56345642 - B1_Mus2 SINE Alu 0 147 2 4 1101 200 59 29 0 chr9 67730914 67730948 -56345224 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 4 1101 423 260 96 73 chr9 67731413 67731651 -56344521 - B4A SINE B4 -6 286 9 4 1101 333 0 0 0 chr9 67731956 67731993 -56344179 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1101 888 125 0 0 chr9 67732606 67732734 -56343438 - B1_Mur2 SINE Alu -21 128 1 4 1101 266 0 29 0 chr9 67733178 67733212 -56342960 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1101 597 278 28 3 chr9 67733666 67733857 -56342315 - B3A SINE B2 -12 204 2 4 1101 189 0 0 0 chr9 67733873 67733894 -56342278 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1101 188 348 112 9 chr9 67734478 67734594 -56341578 + MIR SINE MIR 15 142 -120 4 1101 815 212 139 30 chr9 67735131 67735381 -56340791 - RLTR11A2 LTR ERVK -211 317 1 4 1101 187 273 89 25 chr9 67735392 67735471 -56340701 - L2 LINE L2 -737 2682 2599 4 1101 4001 94 17 28 chr9 67735508 67736086 -56340086 + L1_Mus3 LINE L1 6066 6637 -1 4 1101 204 250 260 0 chr9 67736159 67736255 -56339917 - L2 LINE L2 -1030 2389 2269 4 1101 418 108 0 26 chr9 67736973 67737049 -56339123 + (GGA)n Simple_repeat Simple_repeat 3 76 0 4 1101 325 336 8 0 chr9 67738744 67738872 -56337300 - L1ME3A LINE L1 -311 5862 5734 4 1101 394 221 32 0 chr9 67738893 67738988 -56337184 - L1ME3A LINE L1 -481 5683 5586 4 1101 358 250 185 12 chr9 67739032 67739194 -56336978 - L1ME3A LINE L1 -2517 5478 5289 4 1101 324 0 0 0 chr9 67739422 67739458 -56336714 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1101 21 71 0 0 chr9 67739729 67739771 -56336401 + AT_rich Low_complexity Low_complexity 1 42 0 4 1101 426 239 85 65 chr9 67739771 67739972 -56336200 - Lx8 LINE L1 0 7473 7269 4 1101 628 103 19 0 chr9 67740437 67740544 -56335628 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 1101 405 303 131 20 chr9 67742060 67742259 -56333913 + B4A SINE B4 56 276 -16 4 1101 474 318 25 31 chr9 67742360 67742522 -56333650 + RSINE1 SINE B4 3 163 -2 4 1101 229 233 209 0 chr9 67743216 67743302 -56332870 + MTC-int LTR MaLR 364 467 -791 4 1101 224 169 52 0 chr9 67743638 67743715 -56332457 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1101 297 0 0 0 chr9 67743740 67743773 -56332399 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1101 773 49 10 0 chr9 67744277 67744379 -56331793 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 4 1101 23 0 0 0 chr9 67746252 67746275 -56329897 + AT_rich Low_complexity Low_complexity 1 23 0 4 1101 25 51 0 0 chr9 67746399 67746438 -56329734 + AT_rich Low_complexity Low_complexity 1 39 0 4 1101 2626 131 63 2 chr9 67746723 67747120 -56329052 + MTC LTR MaLR 1 421 0 4 1101 268 305 44 77 chr9 67747452 67747633 -56328539 - L1ME1 LINE L1 -127 6052 5878 4 1101 372 82 0 0 chr9 67747660 67747721 -56328451 + L1_Mus3 LINE L1 6578 6638 0 4 1101 226 273 108 23 chr9 67748021 67748235 -56327937 - L1M4 LINE L1 -2940 3206 2975 4 1101 627 199 84 0 chr9 67748677 67748808 -56327364 + B1_Mur1 SINE Alu 2 143 -6 4 1101 252 0 0 0 chr9 67748817 67748845 -56327327 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1101 1183 194 42 5 chr9 67748854 67749071 -56327101 - URR1B DNA MER1_type 0 225 1 4 1101 528 168 20 10 chr9 67749501 67749603 -56326569 + B1_Mur1 SINE Alu 46 148 -1 4 1101 2793 113 106 28 chr9 67749648 67750111 -56326061 - RLTR19 LTR ERVK 0 499 1 4 1101 425 277 7 55 chr9 67751807 67751952 -56324220 - B1F1 SINE Alu 0 149 12 4 1101 377 286 7 100 chr9 67752193 67752333 -56323839 + PB1 SINE Alu 1 127 0 4 1101 2315 100 53 3 chr9 67752898 67753240 -56322932 - RLTR15 LTR ERVK 0 359 1 4 1101 196 299 126 0 chr9 67753891 67753978 -56322194 - MIRc SINE MIR -110 158 61 4 1101 790 200 128 11 chr9 67754196 67754383 -56321789 - URR1B DNA MER1_type -16 209 1 4 1101 778 213 121 50 chr9 67754749 67754947 -56321225 + B3 SINE B2 1 212 -4 4 1101 446 336 13 20 chr9 67755135 67755284 -56320888 - B1F SINE Alu -1 148 1 5 1101 239 265 45 123 chr9 67755146 67755301 -56320871 + YREP_Mm Unknown Unknown 186 328 -1484 5 1101 21 0 0 0 chr9 67755395 67755416 -56320756 + AT_rich Low_complexity Low_complexity 1 21 0 5 1101 1617 191 133 0 chr9 67756870 67757200 -56318972 - ORR1D1 LTR MaLR 0 374 1 5 1101 204 271 0 20 chr9 67757208 67757257 -56318915 + C-rich Low_complexity Low_complexity 2 49 0 5 1101 253 293 11 99 chr9 67758486 67758577 -56317595 + ID_B1 SINE B4 76 158 -66 5 1101 383 288 17 35 chr9 67758504 67758619 -56317553 + PB1D10 SINE Alu 5 117 0 5 1101 570 196 193 14 chr9 67758871 67759011 -56317161 - B3 SINE B2 -5 211 47 5 1101 254 351 11 2 chr9 67759048 67759149 -56317023 + MIRc SINE MIR 17 119 -149 5 1101 1667 212 120 3 chr9 67759688 67760062 -56316110 - MTC LTR MaLR -3 418 1 5 1101 807 272 81 18 chr9 67760286 67760570 -56315602 - Lx8 LINE L1 -1 7472 7171 5 1101 965 162 14 0 chr9 67762176 67762318 -56313854 + B1_Mur2 SINE Alu 1 144 -5 5 1102 207 0 0 0 chr9 67764410 67764433 -56311739 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1102 218 318 15 15 chr9 67764441 67764508 -56311664 - ID4_ SINE ID -14 69 3 5 1102 27 0 0 0 chr9 67765321 67765348 -56310824 + AT_rich Low_complexity Low_complexity 1 27 0 5 1102 512 240 47 20 chr9 67765834 67765983 -56310189 - B4A SINE B4 -139 153 1 5 1102 250 196 0 21 chr9 67765945 67765992 -56310180 - ZP3AR Satellite Satellite -133 79 34 5 1102 258 343 95 37 chr9 67766242 67766484 -56309688 + MIRb SINE MIR 13 268 0 5 1102 221 277 0 60 chr9 67766880 67766930 -56309242 + L2c LINE L2 3228 3302 -85 5 1102 291 54 0 0 chr9 67767340 67767377 -56308795 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1102 217 341 51 51 chr9 67767735 67767911 -56308261 - L2b LINE L2 -203 3184 3009 5 1102 313 39 39 0 chr9 67768410 67768461 -56307711 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 5 1102 886 88 12 0 chr9 67768464 67768606 -56307566 - B1_Mus2 SINE Alu 0 147 1 5 1102 832 263 81 80 chr9 67769727 67770143 -56306029 - MTE2a LTR MaLR 0 419 1 5 1102 25 31 0 0 chr9 67772163 67772195 -56303977 + AT_rich Low_complexity Low_complexity 1 32 0 5 1102 281 198 269 21 chr9 67772335 67772428 -56303744 - PB1D10 SINE Alu -1 116 1 5 1102 531 69 0 0 chr9 67772823 67772895 -56303277 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 5 1102 372 325 9 9 chr9 67772897 67773012 -56303160 - B1_Mm SINE Alu -6 141 27 5 1102 189 291 24 106 chr9 67773818 67773941 -56302231 - MIRb SINE MIR -61 207 95 5 1102 599 262 24 48 chr9 67775929 67776097 -56300075 - RSINE1 SINE B4 0 165 2 5 1102 626 239 0 69 chr9 67776239 67776404 -56299768 - ID_B1 SINE B4 -3 221 78 5 1102 213 65 0 0 chr9 67780183 67780214 -56295958 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1102 370 306 18 0 chr9 67780956 67781067 -56295105 - PB1D7 SINE Alu -7 113 1 5 1102 24 53 0 0 chr9 67782778 67782816 -56293356 + AT_rich Low_complexity Low_complexity 1 38 0 5 1102 788 87 74 68 chr9 67783154 67783411 -56292761 - L1Md_F2 LINE L1 0 6582 6434 5 1102 931 144 19 0 chr9 67787838 67787998 -56288174 + URR1A DNA MER1_type 57 219 -7 5 1102 212 200 15 0 chr9 67788606 67788671 -56287501 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1102 629 226 44 31 chr9 67788671 67788831 -56287341 - RSINE1 SINE B4 0 165 4 5 1102 348 233 11 11 chr9 67789331 67789422 -56286750 - B4A SINE B4 -194 98 8 5 1102 234 91 0 0 chr9 67789771 67789804 -56286368 + (TATG)n Simple_repeat Simple_repeat 2 34 0 5 1102 487 250 0 8 chr9 67789819 67789936 -56286236 - PB1D9 SINE Alu 0 120 5 5 1102 414 0 0 0 chr9 67790858 67790904 -56285268 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1102 338 344 127 22 chr9 67792001 67792230 -56283942 + Charlie1b DNA MER1_type 1 253 -270 5 1102 25 0 0 0 chr9 67792281 67792306 -56283866 + AT_rich Low_complexity Low_complexity 1 25 0 5 1102 1051 62 0 0 chr9 67792606 67792750 -56283422 - B1_Mus1 SINE Alu 0 148 5 5 1102 5009 212 59 22 chr9 67794305 67795503 -56280669 - Lx5 LINE L1 0 7050 5809 5 1102 995 186 37 51 chr9 67795654 67795869 -56280303 - B3 SINE B2 0 216 5 5 1102 342 0 0 0 chr9 67796273 67796311 -56279861 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 5 1102 1068 122 0 0 chr9 67797593 67797741 -56278431 + B1_Mus1 SINE Alu 1 148 0 5 1102 27 49 0 0 chr9 67797820 67797861 -56278311 + AT_rich Low_complexity Low_complexity 1 41 0 5 1102 180 337 74 0 chr9 67797911 67798006 -56278166 + MIRb SINE MIR 86 187 -81 5 1102 264 122 0 0 chr9 67798349 67798390 -56277782 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1102 423 206 97 103 chr9 67798482 67798677 -56277495 - B3A SINE B2 -3 195 2 5 1102 22 0 0 0 chr9 67800505 67800527 -56275645 + AT_rich Low_complexity Low_complexity 1 22 0 5 1102 418 194 194 0 chr9 67802093 67802191 -56273981 - PB1D10 SINE Alu 0 117 1 5 1102 491 350 43 4 chr9 67802944 67803225 -56272947 - MER46C DNA MER2_type -42 296 5 5 1102 1111 271 79 14 chr9 67803694 67804050 -56272122 - MTE2b LTR MaLR 0 379 1 5 1102 1512 250 51 25 chr9 67804055 67804566 -56271606 - MTE2b-int LTR MaLR -5 1575 897 5 1102 411 137 0 0 chr9 67804571 67804644 -56271528 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1102 324 70 0 0 chr9 67804823 67804866 -56271306 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1102 506 335 128 4 chr9 67804888 67805146 -56271026 - B4A SINE B4 -1 291 2 5 1102 417 167 0 0 chr9 67805775 67805853 -56270319 + CT-rich Low_complexity Low_complexity 2 79 0 5 1102 342 0 0 0 chr9 67806028 67806066 -56270106 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1102 1234 301 169 26 chr9 67807196 67808670 -56267502 + Cheshire DNA MER1_type 365 2049 -371 5 1102 411 315 68 42 chr9 67808724 67808881 -56267291 + B3A SINE B2 2 162 -54 5 1102 384 119 0 0 chr9 67808881 67808940 -56267232 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1102 361 325 69 51 chr9 67808940 67808957 -56267215 + B3 SINE B2 163 179 -37 5 1102 1077 161 48 14 chr9 67810219 67810427 -56265745 + B3 SINE B2 2 216 0 5 1102 422 281 9 9 chr9 67810599 67810714 -56265458 + PB1D7 SINE Alu 6 120 0 5 1102 756 127 14 7 chr9 67811163 67811306 -56264866 + (TA)n Simple_repeat Simple_repeat 2 145 0 5 1102 3265 63 2 16 chr9 67812558 67812994 -56263178 + L1Md_F2 LINE L1 6143 6572 -10 5 1102 300 27 0 0 chr9 67813114 67813151 -56263021 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 5 1102 356 282 0 12 chr9 67813151 67813237 -56262935 - PB1D9 SINE Alu -35 85 1 5 1102 747 279 70 8 chr9 67815525 67815781 -56260391 + B4 SINE B4 2 273 -19 5 1102 206 225 0 0 chr9 67816776 67816816 -56259356 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1102 424 208 58 19 chr9 67817306 67817409 -56258763 - PB1D10 SINE Alu -9 108 2 5 1102 213 39 0 0 chr9 67817435 67817461 -56258711 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 1102 7308 85 48 10 chr9 67817461 67818524 -56257648 - Lx3_Mus LINE L1 -18 6991 5886 5 1102 198 0 0 0 chr9 67818804 67818826 -56257346 + (TCCC)n Simple_repeat Simple_repeat 1 22 0 5 1102 710 253 85 14 chr9 67818826 67819119 -56257053 - Lx8 LINE L1 -55 7418 7105 5 1102 196 341 75 21 chr9 67819532 67819625 -56256547 - MIRb SINE MIR -96 172 75 5 1102 207 171 0 0 chr9 67821806 67821841 -56254331 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 5 1102 297 0 0 0 chr9 67821860 67821893 -56254279 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1102 254 241 35 71 chr9 67821953 67822038 -56254134 + L1MB8 LINE L1 4726 4807 -1339 5 1102 887 282 158 38 chr9 67822265 67823209 -56252963 + L1MB8 LINE L1 5112 6151 -27 5 1102 40271 28 4 6 chr9 67823943 67830122 -56246050 - L1Md_A LINE L1 0 6582 420 5 1102 684 307 62 62 chr9 67831956 67832248 -56243924 + B4A SINE B4 1 292 0 5 1102 22 35 0 0 chr9 67832417 67832446 -56243726 + AT_rich Low_complexity Low_complexity 1 29 0 5 1102 690 169 15 0 chr9 67832585 67832715 -56243457 - B1_Mur1 SINE Alu -1 148 17 5 1102 945 230 10 0 chr9 67835074 67835278 -56240894 - B3 SINE B2 -10 206 1 5 1102 268 244 12 49 chr9 67836427 67836509 -56239663 + CT-rich Low_complexity Low_complexity 4 82 0 5 1102 270 290 0 0 chr9 67836537 67836606 -56239566 - ID2 SINE ID -14 69 1 5 1102 364 262 75 15 chr9 67836755 67836923 -56239249 + B3A SINE B2 2 187 -8 5 1102 298 283 36 36 chr9 67837706 67837816 -56238356 + PB1 SINE Alu 11 120 -7 5 1102 254 309 59 0 chr9 67837820 67837888 -56238284 + ID4 SINE ID 6 77 -6 5 1102 37 0 0 0 chr9 67838721 67838758 -56237414 + AT_rich Low_complexity Low_complexity 1 37 0 5 1102 5450 94 38 20 chr9 67838781 67839413 -56236759 - Lx3C LINE L1 -575 6401 5752 5 1102 582 54 0 0 chr9 67839413 67839487 -56236685 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 5 1102 1196 62 0 7 chr9 67839487 67839634 -56236538 - B1_Mm SINE Alu 0 147 2 5 1102 5450 94 192 22 chr9 67839634 67840129 -56236043 - Lx3C LINE L1 -132 5754 5150 5 1102 1395 258 127 12 chr9 67840135 67840614 -56235558 - Lx8 LINE L1 -2 7471 6938 5 1102 379 211 109 36 chr9 67841240 67841378 -56234794 + RSINE1 SINE B4 17 164 -1 5 1102 369 0 0 0 chr9 67841569 67841610 -56234562 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1102 1231 209 138 21 chr9 67841953 67842286 -56233886 - ORR1D1 LTR MaLR -2 372 1 5 1102 24 32 0 0 chr9 67843888 67843919 -56232253 + AT_rich Low_complexity Low_complexity 1 31 0 6 1102 845 123 0 7 chr9 67844537 67844548 -56231624 + (TC)n Simple_repeat Simple_repeat 1 11 0 6 1102 956 119 11 17 chr9 67844548 67844727 -56231445 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 6 1102 845 123 0 7 chr9 67844727 67844854 -56231318 + (TC)n Simple_repeat Simple_repeat 2 128 0 6 1102 400 88 18 0 chr9 67844854 67844911 -56231261 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 6 1102 306 194 0 0 chr9 67844917 67844979 -56231193 + CT-rich Low_complexity Low_complexity 1 62 0 6 1102 701 154 18 0 chr9 67844984 67845094 -56231078 - PB1D9 SINE Alu -8 112 1 6 1102 291 329 88 6 chr9 67845746 67845905 -56230267 + LTR16B2 LTR ERVL 66 237 -225 6 1102 282 309 176 61 chr9 67846490 67846621 -56229551 - RSINE1 SINE B4 -19 146 1 6 1102 478 272 0 0 chr9 67846988 67847091 -56229081 + MER46C DNA MER2_type 36 138 -200 6 1102 232 306 82 0 chr9 67847150 67847235 -56228937 + MER46C DNA MER2_type 243 334 -4 6 1102 1139 274 67 19 chr9 67847263 67847576 -56228596 - MTEa LTR MaLR -51 328 1 6 1102 21 0 0 0 chr9 67847607 67847628 -56228544 + AT_rich Low_complexity Low_complexity 1 21 0 6 1102 311 240 101 30 chr9 67848378 67848477 -56227695 + MER58A DNA MER1_type 51 156 -68 6 1102 810 286 53 100 chr9 67849911 67850271 -56225901 + ORR1E LTR MaLR 1 345 -14 6 1102 696 267 0 64 chr9 67850807 67851011 -56225161 - B3A SINE B2 -4 194 4 6 1102 288 0 0 0 chr9 67851067 67851099 -56225073 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1102 372 43 0 0 chr9 67851099 67851145 -56225027 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1102 583 276 138 76 chr9 67852356 67852631 -56223541 + B4A SINE B4 1 292 0 6 1102 333 68 0 0 chr9 67852658 67852702 -56223470 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1102 230 279 62 25 chr9 67853115 67853196 -56222976 - MIRb SINE MIR -33 235 152 6 1102 577 303 47 21 chr9 67853220 67853412 -56222760 + B3A SINE B2 2 198 0 6 1102 359 339 39 16 chr9 67853637 67853766 -56222406 + L1M5 LINE L1 5237 5368 -778 6 1102 502 263 28 55 chr9 67854139 67854284 -56221888 - B4A SINE B4 -150 142 2 6 1102 453 217 47 9 chr9 67854318 67854425 -56221747 + MER2 DNA MER2_type 117 227 -118 6 1102 1372 107 88 46 chr9 67854715 67854931 -56221241 + URR1B DNA MER1_type 1 225 0 6 1102 1903 128 194 8 chr9 67855369 67855724 -56220448 + MTC LTR MaLR 1 421 0 6 1102 684 226 213 59 chr9 67856670 67856923 -56219249 - B4A SINE B4 0 292 1 6 1102 272 346 106 40 chr9 67856934 67857160 -56219012 - MamRep434 DNA TcMar -76 350 110 6 1102 345 294 12 0 chr9 67857804 67857889 -56218283 + 5S rRNA rRNA 3 88 -33 6 1102 387 344 97 55 chr9 67857901 67858190 -56217982 + MER54A LTR ERVL 62 362 -539 6 1102 1660 186 80 32 chr9 67858722 67859123 -56217049 - MTC LTR MaLR 0 421 2 6 1102 333 125 0 0 chr9 67859692 67859748 -56216424 + (T)n Simple_repeat Simple_repeat 1 56 0 6 1102 1207 61 0 0 chr9 67859748 67859895 -56216277 - B1_Mus1 SINE Alu 0 148 2 6 1102 1157 207 5 0 chr9 67859919 67860127 -56216045 - B3 SINE B2 -7 209 1 6 1102 3070 46 3 0 chr9 67860183 67860556 -56215616 - L1_Mus1 LINE L1 -490 6076 5703 6 1102 3863 69 2 28 chr9 67860556 67861066 -56215106 + L1_Mus1 LINE L1 6071 6567 0 6 1102 784 267 127 4 chr9 67861225 67861462 -56214710 + B4A SINE B4 8 273 -19 6 1102 360 0 0 0 chr9 67861464 67861504 -56214668 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1102 221 361 56 0 chr9 67861847 67861955 -56214217 + MIRb SINE MIR 147 260 -8 6 1102 751 251 76 38 chr9 67862186 67862422 -56213750 - B4A SINE B4 0 292 48 6 1102 186 196 40 80 chr9 67863175 67863225 -56212947 - L4 LINE RTE -900 1129 1082 6 1102 396 0 0 0 chr9 67864868 67864912 -56211260 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1102 747 312 86 8 chr9 67865722 67865801 -56210371 - MT2A LTR ERVL 0 533 435 6 1102 315 0 0 0 chr9 67865801 67865836 -56210336 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1102 747 312 86 8 chr9 67865836 67866024 -56210148 - MT2A LTR ERVL -99 434 246 6 1102 207 0 0 0 chr9 67866066 67866089 -56210083 + (CCCCCT)n Simple_repeat Simple_repeat 5 27 0 6 1102 355 369 56 39 chr9 67866093 67866216 -56209956 - MT2A LTR ERVL -292 241 7 6 1102 407 309 65 9 chr9 67866216 67866324 -56209848 - MTEa LTR MaLR -259 120 7 6 1102 212 189 0 0 chr9 67867200 67867237 -56208935 - L2b LINE L2 -100 3275 3239 6 1102 555 244 59 0 chr9 67867798 67867917 -56208255 - PB1 SINE Alu 0 127 2 6 1102 296 311 15 13 chr9 67867933 67868013 -56208159 - ID2 SINE ID -64 88 13 6 1102 459 0 0 0 chr9 67868027 67868078 -56208094 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 1102 309 135 0 0 chr9 67868078 67868130 -56208042 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1102 853 288 25 22 chr9 67868195 67868472 -56207700 - B4A SINE B4 -4 288 11 6 1102 194 306 65 0 chr9 67869437 67869499 -56206673 - MIR SINE MIR -75 187 122 6 1102 618 293 80 38 chr9 67869863 67870076 -56206096 + ID_B1 SINE B4 1 222 -2 6 1102 284 298 145 28 chr9 67870792 67870937 -56205235 + MER58B DNA MER1_type 113 274 -67 6 1102 273 357 121 19 chr9 67871184 67871441 -56204731 + L3 LINE CR1 3343 3625 -864 6 1102 182 293 53 13 chr9 67871682 67871758 -56204414 + L3 LINE CR1 4056 4134 -355 6 1102 664 309 61 29 chr9 67872244 67872521 -56203651 - B4A SINE B4 -4 288 3 6 1102 371 266 0 6 chr9 67873887 67874061 -56202111 + (TG)n Simple_repeat Simple_repeat 2 174 0 6 1102 421 250 40 99 chr9 67874101 67874252 -56201920 - MLT1A0 LTR MaLR -223 142 1 6 1102 237 342 80 20 chr9 67874305 67874505 -56201667 + L1ME2 LINE L1 5888 6099 -65 6 1102 186 43 0 0 chr9 67875230 67875253 -56200919 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1102 556 259 9 0 chr9 67875986 67876098 -56200074 + RSINE1 SINE B4 2 114 -51 6 1102 471 18 0 0 chr9 67876098 67876154 -56200018 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1102 764 281 21 5 chr9 67876200 67876372 -56199800 + B3A SINE B2 3 178 -20 6 1102 279 54 0 0 chr9 67876372 67876409 -56199763 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1102 764 281 21 5 chr9 67876409 67876429 -56199743 + B3A SINE B2 179 198 0 6 1102 876 249 119 11 chr9 67877024 67877284 -56198888 + B4A SINE B4 1 288 -4 6 1102 240 189 0 0 chr9 67877907 67877981 -56198191 + GA-rich Low_complexity Low_complexity 1 74 0 6 1102 511 250 24 84 chr9 67877981 67878147 -56198025 - MTEa LTR MaLR -165 214 59 6 1102 279 287 203 0 chr9 67878023 67878166 -56198006 - MLT2B3 LTR ERVL -337 217 46 6 1102 204 304 10 61 chr9 67878231 67878329 -56197843 + L2a LINE L2 3334 3426 0 6 1102 187 288 16 48 chr9 67878359 67878421 -56197751 - L2c LINE L2 -62 3325 3266 6 1102 233 252 0 39 chr9 67879653 67879756 -56196416 + (TATATG)n Simple_repeat Simple_repeat 6 104 0 6 1102 205 292 0 0 chr9 67879758 67879823 -56196349 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1102 1102 247 14 39 chr9 67879825 67880107 -56196065 - B4A SINE B4 -2 290 16 6 1102 259 355 22 11 chr9 67880314 67880405 -56195767 - MLT1A LTR MaLR -60 305 214 6 1102 365 333 0 0 chr9 67880766 67880859 -56195313 - RMER15 LTR ERVL -112 463 371 6 1102 295 308 50 17 chr9 67880891 67881010 -56195162 - MLT1A LTR MaLR -214 160 38 6 1102 786 166 224 11 chr9 67881998 67882181 -56193991 + URR1A DNA MER1_type 1 222 -4 6 1102 1605 241 8 40 chr9 67882189 67882565 -56193607 - MTEa LTR MaLR 0 379 16 6 1102 457 294 115 23 chr9 67884278 67884452 -56191720 - MER63A DNA AcHobo -20 190 1 6 1102 486 83 0 0 chr9 67884735 67884807 -56191365 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1102 825 323 27 19 chr9 67884824 67885083 -56191089 - B4 SINE B4 -4 288 28 6 1102 299 279 119 56 chr9 67885303 67885502 -56190670 - MER106B DNA MER1_type -14 1045 904 6 1102 344 273 39 0 chr9 67886631 67886708 -56189464 + MTE2b LTR MaLR 1 80 -299 6 1102 258 246 15 0 chr9 67886862 67886927 -56189245 - ID_B1 SINE B4 -9 215 150 6 1102 808 279 42 76 chr9 67887722 67887986 -56188186 - MTE2a LTR MaLR 0 379 125 6 1102 217 338 89 57 chr9 67888154 67888311 -56187861 + MIRb SINE MIR 27 188 -80 6 1102 315 0 0 0 chr9 67888645 67888680 -56187492 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1102 357 24 0 0 chr9 67889485 67889527 -56186645 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1102 572 207 42 17 chr9 67889530 67889648 -56186524 - RSINE1 SINE B4 -44 121 1 6 1102 1818 141 147 21 chr9 67890001 67890193 -56185979 - ORR1B2 LTR MaLR 0 367 171 6 1102 735 100 0 0 chr9 67890193 67890303 -56185869 + (GA)n Simple_repeat Simple_repeat 1 110 0 6 1102 1818 141 147 21 chr9 67890303 67890436 -56185736 - ORR1B2 LTR MaLR -197 170 3 6 1102 239 294 12 12 chr9 67890729 67890815 -56185357 + L1MEd LINE L1 1056 1141 -4978 6 1102 212 133 0 0 chr9 67890831 67890861 -56185311 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 6 1102 213 94 0 0 chr9 67890866 67890898 -56185274 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1102 225 0 0 0 chr9 67891384 67891409 -56184763 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1102 336 102 0 0 chr9 67891878 67891927 -56184245 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1102 213 183 16 16 chr9 67891951 67892012 -56184160 + (TTA)n Simple_repeat Simple_repeat 3 63 0 6 1102 976 257 54 54 chr9 67892013 67892326 -56183846 - Lx5 LINE L1 -19 7031 6719 6 1102 959 315 101 5 chr9 67892541 67893147 -56183025 + Arthur1 DNA Tip100 2856 3519 -428 6 1102 323 188 43 0 chr9 67893151 67893220 -56182952 + B3A SINE B2 4 75 -123 6 1102 451 282 145 50 chr9 67893386 67893565 -56182607 + B3A SINE B2 3 198 0 6 1102 633 136 0 0 chr9 67893581 67893684 -56182488 + (GGA)n Simple_repeat Simple_repeat 1 103 0 7 1102 373 326 28 7 chr9 67893937 67894115 -56182057 + L1MB8 LINE L1 5697 5889 -289 7 1102 245 237 0 26 chr9 67894226 67894304 -56181868 + L1MD3 LINE L1 6905 6980 -1015 7 1102 1161 226 28 52 chr9 67894303 67894481 -56181691 - L1M2 LINE L1 -3122 3021 2842 7 1102 1068 135 125 39 chr9 67894481 67894689 -56181483 + URR1A DNA MER1_type 1 226 0 7 1102 1161 226 28 52 chr9 67894689 67894897 -56181275 - L1M2 LINE L1 -3302 2841 2645 7 1102 326 188 43 0 chr9 67894997 67895066 -56181106 - B3A SINE B2 -123 75 4 7 137 455 284 12 0 chr9 67895148 67895317 -56180855 - L1_Mur3 LINE L1 -3303 2577 2407 7 1103 1317 297 35 35 chr9 67895313 67895833 -56180339 - Lx9 LINE L1 -216 7428 6909 7 1103 782 89 9 0 chr9 67895850 67895962 -56180210 + RLTR1B LTR ERV1 400 512 0 7 1103 5531 67 35 6 chr9 67895962 67896680 -56179492 + RLTR1B-int LTR ERV1 1 739 -2560 7 1103 2435 27 6 0 chr9 67896679 67897234 -56178938 + RLTR1B-int LTR ERV1 2592 3299 0 7 1103 2916 78 26 12 chr9 67897234 67897664 -56178508 + RLTR1B LTR ERV1 1 436 -76 7 1103 363 278 11 0 chr9 67897680 67897770 -56178402 - Lx9 LINE L1 -720 6924 6834 7 1103 1376 275 123 39 chr9 67897766 67898491 -56177681 + L1MA8 LINE L1 4615 5400 -743 7 1103 402 21 0 0 chr9 67898492 67898539 -56177633 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1103 507 208 0 0 chr9 67898540 67898660 -56177512 + (TA)n Simple_repeat Simple_repeat 1 120 0 7 1103 235 111 0 0 chr9 67898662 67898698 -56177474 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1103 1810 267 100 18 chr9 67898737 67899458 -56176714 + L1MA8 LINE L1 5448 6227 -64 7 1103 201 94 0 0 chr9 67899483 67899515 -56176657 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1103 511 339 32 11 chr9 67899548 67899733 -56176439 + B3A SINE B2 7 195 -3 7 1103 252 325 127 34 chr9 67899754 67899872 -56176300 + RSINE1 SINE B4 4 132 -33 7 1103 279 0 0 0 chr9 67899881 67899912 -56176260 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1103 315 0 0 0 chr9 67900943 67900978 -56175194 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1103 904 292 10 27 chr9 67900993 67901289 -56174883 - B4A SINE B4 0 292 2 7 1103 378 0 0 0 chr9 67902202 67902244 -56173928 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1103 954 268 78 19 chr9 67903349 67903619 -56172553 + B4A SINE B4 1 286 -6 7 1103 468 0 0 0 chr9 67903639 67903691 -56172481 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1103 654 13 0 0 chr9 67903708 67903783 -56172389 + (GA)n Simple_repeat Simple_repeat 2 76 0 7 1103 391 322 100 47 chr9 67904200 67904870 -56171302 - ERVL-E-int LTR ERVL -1112 4555 3916 7 1103 508 330 43 11 chr9 67904974 67905250 -56170922 + Charlie4a DNA MER1_type 6 290 -218 7 1103 755 232 0 57 chr9 67905364 67905574 -56170598 - B3A SINE B2 0 198 1 7 1103 1204 320 75 24 chr9 67905696 67906324 -56169848 + Charlie24 DNA MER1_type 611 1270 -1180 7 1103 5238 112 43 4 chr9 67906324 67907069 -56169103 + L1VL4 LINE L1 16 789 -5513 7 1103 25361 148 21 38 chr9 67907063 67909396 -56166776 + Lx LINE L1 1204 3542 -3112 7 1103 959 56 0 0 chr9 67909396 67909521 -56166651 + B1_Mus1 SINE Alu 3 127 -21 7 1103 25361 148 21 38 chr9 67909521 67912623 -56163549 + Lx LINE L1 3543 6654 0 7 1103 726 284 9 41 chr9 67912657 67912877 -56163295 + B4 SINE B4 2 214 -78 7 1103 216 248 0 44 chr9 67912899 67913013 -56163159 + (CATATA)n Simple_repeat Simple_repeat 3 111 0 7 1103 883 316 42 25 chr9 67913177 67913583 -56162589 + Charlie24 DNA MER1_type 1399 1811 -639 7 1103 484 335 40 106 chr9 67913886 67914236 -56161936 + ORR1E LTR MaLR 1 327 -32 7 1103 306 301 68 20 chr9 67916315 67916461 -56159711 + L1MC LINE L1 5103 5255 -891 7 1103 234 0 0 0 chr9 67916467 67916493 -56159679 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 7 1103 5277 164 69 37 chr9 67916508 67917613 -56158559 - Lx4B LINE L1 -74 6984 5845 7 1103 4147 152 13 1 chr9 67917616 67918288 -56157884 + Lx4B LINE L1 5167 5846 -31 7 1103 885 37 0 0 chr9 67919898 67920007 -56156165 + (TC)n Simple_repeat Simple_repeat 2 110 0 7 1103 546 287 96 15 chr9 67920494 67920692 -56155480 + B3A SINE B2 2 215 -1 7 1103 574 250 96 36 chr9 67921060 67921226 -56154946 - B4 SINE B4 -73 219 44 7 1103 438 308 141 20 chr9 67921488 67921687 -56154485 + L1MD2 LINE L1 623 845 -5702 7 1103 340 295 181 45 chr9 67921885 67922222 -56153950 + L1MD2 LINE L1 1079 1461 -5179 7 1103 443 299 80 20 chr9 67922558 67922858 -56153314 + L1MD2 LINE L1 4549 4866 -1678 7 1103 664 250 83 0 chr9 67923061 67923229 -56152943 - B3A SINE B2 -16 182 1 7 1103 458 298 128 16 chr9 67923262 67923699 -56152473 - L1MEf LINE L1 -2397 3749 3264 7 1103 369 253 0 0 chr9 67923726 67923805 -56152367 - ID4 SINE ID -1 82 4 7 1103 1588 236 69 3 chr9 67923852 67924239 -56151933 + MTD LTR MaLR 1 398 -21 7 1103 244 325 12 12 chr9 67924246 67924330 -56151842 - PB1D10 SINE Alu -33 84 1 7 1103 409 312 142 23 chr9 67924330 67924723 -56151449 - L1MEf LINE L1 -2883 3263 2824 7 1103 463 254 83 15 chr9 67925237 67925361 -56150811 + MTD LTR MaLR 6 138 -281 7 1103 649 169 11 54 chr9 67925361 67925521 -56150651 + ORR1B2 LTR MaLR 1 132 -195 7 1103 510 329 78 58 chr9 67925521 67926024 -56150148 - L1MEf LINE L1 -4801 1441 929 7 1103 542 242 17 0 chr9 67927654 67927774 -56148398 - ID_B1 SINE B4 -19 205 84 7 1103 366 241 0 25 chr9 67927774 67927855 -56148317 - ID4_ SINE ID -2 81 3 7 1103 276 305 31 31 chr9 67928082 67928180 -56147992 + PB1D10 SINE Alu 9 106 -11 7 1103 378 0 0 0 chr9 67928404 67928446 -56147726 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1103 464 306 8 0 chr9 67929147 67929281 -56146891 - ID_B1 SINE B4 0 224 90 7 1103 510 254 79 0 chr9 67929314 67929440 -56146732 - B1F1 SINE Alu -11 138 3 7 1103 950 290 34 15 chr9 67929538 67929801 -56146371 - B4 SINE B4 -23 269 2 7 1103 420 55 0 0 chr9 67931599 67931654 -56144518 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1103 559 290 58 6 chr9 67931655 67931811 -56144361 - B3A SINE B2 -27 171 8 7 1103 389 368 20 0 chr9 67931812 67931964 -56144208 - ID_B1 SINE B4 -69 155 1 7 1103 330 261 55 63 chr9 67932261 67932388 -56143784 + MIRb SINE MIR 66 191 -77 7 1103 569 232 58 7 chr9 67934102 67934254 -56141918 - ID_B1 SINE B4 -48 244 83 7 1103 420 108 15 0 chr9 67934740 67934805 -56141367 - B4 SINE B4 -221 71 6 7 1103 268 322 94 22 chr9 67935700 67935881 -56140291 - MIR SINE MIR -46 216 23 7 1103 387 0 0 0 chr9 67936354 67936397 -56139775 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1103 486 0 0 0 chr9 67936397 67936450 -56139722 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1103 276 294 21 11 chr9 67937429 67937522 -56138650 + CT-rich Low_complexity Low_complexity 3 96 0 7 1103 300 292 28 0 chr9 67937551 67937623 -56138549 - B1F1 SINE Alu -73 76 3 7 1103 438 20 0 0 chr9 67937675 67937726 -56138446 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1103 447 299 56 141 chr9 67937762 67937996 -56138176 - B4 SINE B4 -74 218 5 7 1103 192 353 10 10 chr9 67939392 67939495 -56136677 + MIR SINE MIR 73 175 -87 7 1103 305 331 20 20 chr9 67940042 67940190 -56135982 + CT-rich Low_complexity Low_complexity 4 151 0 7 1103 311 348 36 0 chr9 67940190 67940302 -56135870 + MLT1A LTR MaLR 173 288 -86 7 1103 992 244 149 32 chr9 67940310 67940619 -56135553 - ORR1D2 LTR MaLR -19 351 7 7 1103 486 0 0 0 chr9 67941353 67941407 -56134765 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1103 777 268 11 0 chr9 67941601 67941780 -56134392 - ID_B1 SINE B4 -38 186 6 7 1103 401 338 21 0 chr9 67943724 67943866 -56132306 + ID_B1 SINE B4 80 224 0 7 1103 731 259 98 0 chr9 67944822 67945015 -56131157 - B3 SINE B2 -1 215 4 7 1103 190 248 16 11 chr9 67945227 67945288 -56130884 - MIRb SINE MIR -94 174 116 7 1103 1736 176 56 0 chr9 67945899 67946239 -56129933 - ORR1B2 LTR MaLR -8 359 1 7 1103 228 149 0 0 chr9 67947484 67947531 -56128641 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1103 542 198 0 0 chr9 67947977 67948068 -56128104 + URR1A DNA MER1_type 1 91 -135 7 1103 306 94 0 0 chr9 67948068 67948121 -56128051 - L1_Mus4 LINE L1 -7 6629 6577 7 1103 6613 63 2 0 chr9 67948121 67948932 -56127240 + L1_Mus3 LINE L1 5648 6460 -178 7 1103 720 107 12 125 chr9 67948940 67949100 -56127072 + URR1A DNA MER1_type 85 226 0 7 1103 416 255 141 96 chr9 67949407 67949698 -56126474 - MLT1A0 LTR MaLR -28 337 34 7 1103 219 36 0 0 chr9 67949960 67949988 -56126184 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1103 180 0 0 0 chr9 67950327 67950347 -56125825 + (TC)n Simple_repeat Simple_repeat 1 20 0 7 1103 584 328 85 41 chr9 67950366 67950636 -56125536 - B4 SINE B4 -10 282 1 7 1103 428 227 254 0 chr9 67951367 67951536 -56124636 + ORR1D2 LTR MaLR 1 212 -158 7 1103 468 0 0 0 chr9 67952474 67952526 -56123646 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1103 1018 142 0 0 chr9 67952528 67952697 -56123475 - B2_Mm2 SINE B2 -26 169 1 7 1103 609 133 9 0 chr9 67952787 67952892 -56123280 - B2_Mm1t SINE B2 -85 108 3 7 1103 255 260 0 22 chr9 67953081 67953225 -56122947 + CT-rich Low_complexity Low_complexity 1 140 0 7 1103 5439 131 43 15 chr9 67953513 67954395 -56121777 - Lx4A LINE L1 0 7058 6152 7 1103 432 0 0 0 chr9 67954485 67954533 -56121639 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1103 467 293 79 13 chr9 67956121 67956273 -56119899 - RSINE1 SINE B4 0 165 4 7 1103 403 206 86 3 chr9 67956306 67956444 -56119728 + B3A SINE B2 3 164 -31 7 1103 296 319 114 0 chr9 67956977 67957143 -56119029 - MIR SINE MIR -76 186 2 7 1103 180 0 0 0 chr9 67957256 67957276 -56118896 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1103 255 316 31 0 chr9 67957387 67957485 -56118687 + MIR SINE MIR 151 251 -11 7 1103 342 0 0 0 chr9 67958461 67958499 -56117673 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1103 508 331 48 38 chr9 67959076 67959365 -56116807 - B4A SINE B4 0 292 1 7 1103 25 51 0 0 chr9 67959536 67959575 -56116597 + AT_rich Low_complexity Low_complexity 1 39 0 7 1103 938 278 119 45 chr9 67959587 67959676 -56116496 - Lx8 LINE L1 -28 7445 7331 8 1103 378 57 0 0 chr9 67959676 67959729 -56116443 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1103 938 278 119 45 chr9 67959729 67960125 -56116047 - Lx8 LINE L1 -143 7330 6924 8 1103 315 137 0 19 chr9 67960901 67960953 -56115219 + PB1D10 SINE Alu 10 60 -57 8 1103 407 268 31 0 chr9 67961390 67961487 -56114685 - Lx8 LINE L1 -531 6942 6843 8 1103 250 169 65 48 chr9 67961489 67961551 -56114621 + B3 SINE B2 1 63 -153 8 1103 318 167 0 0 chr9 67962556 67962616 -56113556 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1103 484 273 34 76 chr9 67962661 67962886 -56113286 - B4A SINE B4 -58 234 2 8 1103 225 327 144 70 chr9 67963032 67963302 -56112870 + L2b LINE L2 3066 3355 -20 8 1103 675 241 14 7 chr9 67963544 67963686 -56112486 - RSINE1 SINE B4 -17 148 6 8 1103 209 219 0 0 chr9 67964717 67964758 -56111414 - L2b LINE L2 -16 3359 3319 8 1103 216 135 0 0 chr9 67964789 67964826 -56111346 + (TATG)n Simple_repeat Simple_repeat 2 38 0 8 1103 228 328 44 15 chr9 67964827 67964895 -56111277 - B4A SINE B4 0 292 223 8 1103 21 0 0 0 chr9 67964897 67964918 -56111254 + AT_rich Low_complexity Low_complexity 1 21 0 8 1103 429 340 18 25 chr9 67964949 67965112 -56111060 - RSINE1 SINE B4 -1 164 3 8 1103 726 293 18 9 chr9 67965113 67965340 -56110832 - B4A SINE B4 -62 230 2 8 1103 958 145 0 16 chr9 67965436 67965618 -56110554 + GA-rich Low_complexity Low_complexity 1 179 0 8 1103 219 119 48 0 chr9 67965618 67965660 -56110512 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 8 1103 423 0 0 0 chr9 67966406 67966453 -56109719 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1103 6550 12 0 0 chr9 67966656 67967382 -56108790 + L1Md_T LINE L1 4861 5586 -297 8 1103 8607 32 0 0 chr9 67967382 67968377 -56107795 + L1Md_T LINE L1 5587 6581 -1 8 1103 21 0 0 0 chr9 67968862 67968883 -56107289 + AT_rich Low_complexity Low_complexity 1 21 0 8 1103 366 305 70 56 chr9 67968884 67969020 -56107152 - Lx8 LINE L1 -2 7471 7335 8 1103 450 0 0 0 chr9 67969020 67969070 -56107102 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1103 366 305 70 56 chr9 67969070 67969235 -56106937 - Lx8 LINE L1 -139 7334 7166 8 1103 338 317 64 14 chr9 67969229 67969370 -56106802 - Lx8 LINE L1 -445 7028 6881 8 1103 284 332 77 14 chr9 67969371 67969579 -56106593 + L2 LINE L2 775 995 -2424 8 1103 229 339 70 26 chr9 67969667 67969782 -56106390 + L2 LINE L2 1175 1294 -2125 8 1103 694 265 6 18 chr9 67970063 67970232 -56105940 + ID_B1 SINE B4 51 217 -7 8 1103 231 274 71 0 chr9 67970442 67970526 -56105646 + L1ME4a LINE L1 6010 6099 -25 8 1103 520 205 137 109 chr9 67970996 67971171 -56105001 - B3A SINE B2 -1 194 15 8 1103 847 347 20 32 chr9 67973221 67973629 -56102543 - MLT1A1 LTR MaLR 0 408 6 8 1103 949 19 0 0 chr9 67973820 67973927 -56102245 + L1_Mus1 LINE L1 6373 6479 -88 8 1103 300 246 0 28 chr9 67973994 67974065 -56102107 + B4A SINE B4 224 292 0 8 1103 351 269 24 40 chr9 67974936 67975060 -56101112 - RSINE1 SINE B4 0 165 44 8 1103 2772 116 124 4 chr9 67975703 67976171 -56100001 - RLTR28 LTR ERVL 0 524 1 8 1103 586 299 61 52 chr9 67976173 67976501 -56099671 - MT2A LTR ERVL -3 530 200 8 1103 2742 63 13 0 chr9 67976933 67977311 -56098861 + MTB LTR MaLR 16 398 -2 8 1103 1530 195 62 12 chr9 67977880 67978217 -56097955 - ORR1D2 LTR MaLR -16 354 1 8 1103 268 301 35 62 chr9 67978275 67978420 -56097752 - RMER15 LTR ERVL -176 399 259 8 1103 330 316 25 34 chr9 67978934 67979052 -56097120 - RSINE1 SINE B4 -6 159 43 8 1103 29 60 0 0 chr9 67979462 67979512 -56096660 + AT_rich Low_complexity Low_complexity 1 50 0 8 1103 485 274 27 27 chr9 67979518 67979668 -56096504 - RSINE1 SINE B4 -1 164 15 8 1103 287 270 21 100 chr9 67980246 67980386 -56095786 - B3A SINE B2 0 198 70 8 1103 21 71 0 0 chr9 67980808 67980850 -56095322 + AT_rich Low_complexity Low_complexity 1 42 0 8 1103 924 141 17 0 chr9 67981173 67981350 -56094822 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 8 1103 315 286 101 6 chr9 67981542 67981711 -56094461 - L1M5 LINE L1 -3016 3130 2946 8 1103 610 227 77 13 chr9 67982024 67982180 -56093992 + B4A SINE B4 4 169 -123 8 1103 531 78 0 0 chr9 67982298 67982375 -56093797 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 1103 964 296 35 23 chr9 67983208 67983640 -56092532 - L1MC4a LINE L1 -9 7873 7437 8 1103 1043 236 22 118 chr9 67983640 67983962 -56092210 + B4 SINE B4 2 292 0 8 1103 716 311 77 89 chr9 67983962 67983994 -56092178 - L1MC4a LINE L1 -588 7454 7422 8 1103 207 100 0 0 chr9 67983994 67984024 -56092148 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1103 716 311 77 89 chr9 67984024 67984340 -56091832 - L1MC4a LINE L1 -621 7421 7129 8 1103 4135 45 0 0 chr9 67984376 67984866 -56091306 - L1Md_T LINE L1 0 6582 6093 8 1103 252 0 0 0 chr9 67985038 67985066 -56091106 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1103 362 271 101 0 chr9 67985117 67985246 -56090926 - L1MC4a LINE L1 -1155 6887 6746 8 1103 657 264 46 88 chr9 67985442 67985725 -56090447 - B4A SINE B4 -18 274 4 8 1103 297 207 0 0 chr9 67985725 67985783 -56090389 - L1MC4a LINE L1 -2145 5737 5680 8 1103 22 56 0 0 chr9 67986085 67986121 -56090051 + AT_rich Low_complexity Low_complexity 1 36 0 8 1103 517 274 116 0 chr9 67986138 67986284 -56089888 - RSINE1 SINE B4 0 165 3 8 1103 24 0 0 0 chr9 67986839 67986863 -56089309 + AT_rich Low_complexity Low_complexity 1 24 0 8 1103 669 206 22 22 chr9 67987062 67987196 -56088976 + B1_Mur2 SINE Alu 3 136 -13 8 1103 576 307 32 91 chr9 67987811 67988119 -56088053 - Lx8 LINE L1 -64 7409 7120 8 1103 3598 61 0 2 chr9 67988518 67988961 -56087211 - L1Md_F2 LINE L1 -16 6566 6125 8 1103 25 31 0 0 chr9 67989089 67989121 -56087051 + AT_rich Low_complexity Low_complexity 1 32 0 8 1103 534 242 91 8 chr9 67989123 67989244 -56086928 - RSINE1 SINE B4 -33 132 2 8 1103 1282 237 91 23 chr9 67989449 67989756 -56086416 - Lx5 LINE L1 0 7050 6723 8 1103 431 270 229 4 chr9 67989828 67990077 -56086095 - Arthur1 DNA Tip100 -115 3832 3528 8 1103 244 250 0 0 chr9 67990109 67990165 -56086007 + MTEb LTR MaLR 1 56 -323 8 1103 727 317 83 12 chr9 67990184 67990436 -56085736 + MTEb LTR MaLR 108 377 -2 8 1103 1185 69 0 0 chr9 67990463 67990608 -56085564 + B1_Mus2 SINE Alu 3 147 0 8 1103 573 135 0 0 chr9 67990608 67990734 -56085438 + (A)n Simple_repeat Simple_repeat 1 126 0 8 1103 465 137 0 0 chr9 67991634 67991707 -56084465 - B3A SINE B2 -119 79 7 8 1103 832 218 20 54 chr9 67992623 67992827 -56083345 - B3A SINE B2 -1 197 1 8 1103 441 0 0 0 chr9 67992860 67992909 -56083263 + (TAA)n Simple_repeat Simple_repeat 3 51 0 8 1103 297 265 0 12 chr9 67993199 67993283 -56082889 - L1ME2 LINE L1 -266 5898 5816 8 1103 207 88 0 0 chr9 67993436 67993470 -56082702 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 1103 38717 30 0 0 chr9 67993526 67999944 -56076228 - L1Md_T LINE L1 0 6585 71 8 1103 232 214 18 0 chr9 68001129 68001185 -56074987 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1103 504 298 226 28 chr9 68001415 68001778 -56074394 - Lx8 LINE L1 -4 7469 7035 2 1103 908 261 62 4 chr9 68002229 68002502 -56073670 - Lx8 LINE L1 -405 7068 6780 3 1103 845 257 51 62 chr9 68002785 68002989 -56073183 + B4 SINE B4 1 215 -77 4 1103 348 0 19 37 chr9 68002989 68003043 -56073129 + (CAA)n Simple_repeat Simple_repeat 2 54 0 5 1103 845 257 51 62 chr9 68003043 68003095 -56073077 + B4 SINE B4 216 254 -38 4 1103 684 192 0 0 chr9 68003241 68003361 -56072811 + RSINE1 SINE B4 11 130 -35 6 1103 240 111 0 0 chr9 68004312 68004348 -56071824 + (TGG)n Simple_repeat Simple_repeat 3 38 0 7 1103 234 233 0 0 chr9 68004372 68004432 -56071740 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1103 616 306 81 53 chr9 68004445 68004728 -56071444 - B4A SINE B4 0 292 2 9 1103 1766 193 36 143 chr9 68004859 68005019 -56071153 - Lx7 LINE L1 0 7696 7526 1 1103 524 116 0 10 chr9 68005019 68005115 -56071057 + (CTATA)n Simple_repeat Simple_repeat 3 97 0 1 1103 1766 193 36 143 chr9 68005115 68005457 -56070715 - Lx7 LINE L1 -171 7525 7248 1 1103 366 70 0 0 chr9 68005461 68005518 -56070654 + Lx LINE L1 6595 6651 -3 1 1103 560 273 36 47 chr9 68005519 68005708 -56070464 + B3A SINE B2 29 216 0 1 1103 6843 27 0 0 chr9 68005900 68006684 -56069488 - L1Md_T LINE L1 -725 5158 4375 1 1103 3866 18 0 0 chr9 68006683 68007121 -56069051 + L1Md_T LINE L1 5149 5586 -297 1 1103 9078 6 3 0 chr9 68007121 68008149 -56068023 + L1Md_T LINE L1 5587 6582 0 1 1103 870 257 117 25 chr9 68009758 68010060 -56066112 - ORR1E LTR MaLR 0 374 41 1 1103 738 270 87 29 chr9 68011476 68011751 -56064421 + B4A SINE B4 2 292 0 1 1103 993 198 293 27 chr9 68011925 68012253 -56063919 - MTD LTR MaLR -2 417 3 1 1103 492 276 29 22 chr9 68013121 68013258 -56062914 - B3A SINE B2 -50 148 11 1 1103 495 0 0 0 chr9 68013276 68013331 -56062841 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 1103 274 302 92 29 chr9 68013332 68013506 -56062666 - Arthur1B DNA Tip100 -157 1068 884 2 1103 1245 60 0 0 chr9 68013665 68013832 -56062340 + (TCTCCC)n Simple_repeat Simple_repeat 4 170 0 2 1103 22 0 0 0 chr9 68015326 68015348 -56060824 + AT_rich Low_complexity Low_complexity 1 22 0 2 1103 180 111 0 0 chr9 68015361 68015388 -56060784 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1103 550 236 6 6 chr9 68015391 68015557 -56060615 + (TA)n Simple_repeat Simple_repeat 1 166 0 2 1103 768 259 11 11 chr9 68015589 68015769 -56060403 - B3 SINE B2 -36 180 1 2 1103 557 325 29 63 chr9 68015775 68015982 -56060190 - B4A SINE B4 -90 202 3 2 1103 592 277 146 29 chr9 68016699 68017048 -56059124 + MLT1B LTR MaLR 1 390 0 2 1103 362 317 46 75 chr9 68017669 68017843 -56058329 - B4A SINE B4 -122 170 2 2 1103 486 0 0 0 chr9 68018747 68018801 -56057371 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2 1103 802 237 41 5 chr9 68018810 68019005 -56057167 - ID_B1 SINE B4 0 224 23 3 1103 338 58 0 37 chr9 68020598 68020652 -56055520 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 3 1103 655 182 32 0 chr9 68020653 68020779 -56055393 - B1_Mur2 SINE Alu -15 134 5 3 1103 446 0 0 18 chr9 68021001 68021056 -56055116 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1103 647 294 46 21 chr9 68021104 68021344 -56054828 - B4 SINE B4 -4 288 43 3 1103 1677 16 11 0 chr9 68021353 68021543 -56054629 - B2_Mm1t SINE B2 0 193 2 3 1103 8478 39 7 9 chr9 68021913 68023131 -56053041 - L1Md_F2 LINE L1 -1 6581 5244 3 1103 1273 41 6 34 chr9 68023131 68023308 -56052864 - L1Md_F2 LINE L1 0 6582 6411 3 1103 417 20 0 0 chr9 68023312 68023362 -56052810 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1103 1119 159 54 41 chr9 68023362 68023407 -56052765 - L1Md_F2 LINE L1 -640 5243 5193 3 1103 437 321 69 51 chr9 68023547 68023823 -56052349 + L1MEa LINE L1 399 679 -5457 3 1103 531 296 72 7 chr9 68023866 68024019 -56052153 - RSINE1 SINE B4 0 165 3 4 1103 278 296 0 22 chr9 68024036 68024126 -56052046 + L1MEa LINE L1 682 769 -5473 3 1103 363 376 71 20 chr9 68024127 68024325 -56051847 - MLT1C LTR MaLR -4 463 256 4 1103 482 304 91 79 chr9 68024599 68024917 -56051255 + MTE2a LTR MaLR 30 351 -28 4 1103 531 273 48 115 chr9 68024942 68025272 -56050900 - ORR1E LTR MaLR -24 355 1 4 1103 776 211 15 61 chr9 68025645 68025842 -56050330 + B3A SINE B2 6 193 -5 4 1103 22 35 0 0 chr9 68026043 68026072 -56050100 + AT_rich Low_complexity Low_complexity 1 29 0 4 137 2981 35 0 3 chr9 68026163 68026509 -56049663 - IAPLTR4 LTR ERVK 0 345 1 4 1104 21 36 0 0 chr9 68026555 68026583 -56049589 + AT_rich Low_complexity Low_complexity 1 28 0 4 1104 290 282 51 0 chr9 68026603 68026681 -56049491 + L1MEa LINE L1 2416 2497 -3649 3 1104 16675 172 24 87 chr9 68026804 68030946 -56045226 + Lx5 LINE L1 902 4833 -1047 4 1104 2856 29 2 177 chr9 68030952 68031420 -56044752 - RLTR10 LTR ERVK -4 386 1 4 1104 9031 14 1 0 chr9 68031422 68032416 -56043756 - RLTR10-int LTR ERVK -3 1984 990 4 1104 8191 48 9 3 chr9 68032692 68033682 -56042490 - RLTR10-int LTR ERVK -989 998 3 4 1104 2867 26 2 177 chr9 68033690 68034158 -56042014 - RLTR10 LTR ERVK -4 386 1 4 1104 5760 153 58 4 chr9 68034160 68034424 -56041748 + Lx5 LINE L1 4829 5099 -778 4 1104 1616 37 0 0 chr9 68034424 68034611 -56041561 + B2_Mm1a SINE B2 2 188 -5 5 1104 7092 177 57 3 chr9 68034611 68036441 -56039731 + Lx5 LINE L1 5100 7045 -5 4 1104 333 305 95 27 chr9 68036792 68037078 -56039094 - MLT1E1A LTR MaLR 0 680 352 5 1104 483 317 89 6 chr9 68037194 68037362 -56038810 - B3A SINE B2 -15 183 2 5 1104 200 111 0 22 chr9 68037466 68037512 -56038660 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 5 1104 408 20 0 0 chr9 68037621 68037670 -56038502 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1104 719 298 67 0 chr9 68037676 68037884 -56038288 - MTEa LTR MaLR -157 222 1 5 1104 537 281 7 0 chr9 68038863 68038998 -56037174 + ID_B1 SINE B4 81 216 -8 5 1104 510 303 35 7 chr9 68039422 68039565 -56036607 + B3A SINE B2 3 149 -49 5 1104 412 315 0 9 chr9 68039560 68039669 -56036503 + RSINE1 SINE B4 43 150 -15 5 1104 309 311 38 8 chr9 68040006 68040139 -56036033 - L1M5 LINE L1 -457 5667 5531 5 1104 288 0 0 0 chr9 68040332 68040364 -56035808 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1104 830 207 0 0 chr9 68040382 68040532 -56035640 - B3A SINE B2 -48 150 1 6 1104 375 23 0 0 chr9 68040847 68040891 -56035281 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1104 1578 184 3 10 chr9 68040969 68041281 -56034891 - RLTR20B3 LTR ERVK -38 539 230 6 1104 217 250 206 0 chr9 68041331 68041399 -56034773 - RSINE1 SINE B4 -71 94 13 6 1104 21 0 0 0 chr9 68041411 68041432 -56034740 + AT_rich Low_complexity Low_complexity 1 21 0 6 1104 304 220 143 45 chr9 68042301 68042434 -56033738 + MLT1A1 LTR MaLR 259 404 -4 6 1104 1426 52 12 0 chr9 68042715 68042887 -56033285 + L1Md_F3 LINE L1 5413 5586 -297 6 1104 8289 22 26 0 chr9 68042887 68043848 -56032324 + L1Md_F3 LINE L1 5587 6572 -12 6 1104 21 36 0 0 chr9 68044114 68044142 -56032030 + AT_rich Low_complexity Low_complexity 1 28 0 6 1104 966 211 16 16 chr9 68044211 68044404 -56031768 + ID_B1 SINE B4 25 217 -7 6 1104 22 35 0 0 chr9 68044901 68044930 -56031242 + AT_rich Low_complexity Low_complexity 1 29 0 7 1104 1024 243 5 18 chr9 68044939 68045157 -56031015 - ID_B1 SINE B4 -2 222 8 7 1104 217 240 26 26 chr9 68045727 68045804 -56030368 + L4 LINE RTE 1941 2017 -12 7 1104 257 286 40 10 chr9 68046009 68046108 -56030064 - RMER15 LTR ERVL -36 539 438 7 1104 332 266 158 38 chr9 68046144 68046277 -56029895 + RSINE1 SINE B4 17 165 0 7 1104 1544 59 0 0 chr9 68046791 68046978 -56029194 + B2_Mm1a SINE B2 2 188 -5 7 1104 458 259 7 45 chr9 68047261 68047415 -56028757 + MER3 DNA MER1_type 42 189 -20 7 1104 892 247 151 28 chr9 68047419 68047551 -56028621 + MTEa LTR MaLR 1 155 -224 7 1104 230 0 33 0 chr9 68047551 68047581 -56028591 + (TGG)n Simple_repeat Simple_repeat 3 33 0 7 1104 892 247 151 28 chr9 68047581 68047773 -56028399 + MTEa LTR MaLR 156 365 -14 7 1104 299 217 34 17 chr9 68049342 68049459 -56026713 - Lx9 LINE L1 0 7644 7526 7 1104 261 0 0 0 chr9 68049462 68049491 -56026681 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1104 552 181 81 50 chr9 68049554 68049698 -56026474 - MTD LTR MaLR -14 405 238 8 1104 765 301 34 4 chr9 68049992 68050255 -56025917 - MTD LTR MaLR -137 282 12 8 1104 512 267 140 34 chr9 68050793 68050971 -56025201 - B3A SINE B2 -1 197 1 8 1104 366 42 0 0 chr9 68051227 68051275 -56024897 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1104 198 0 0 0 chr9 68051324 68051346 -56024826 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1104 356 301 65 11 chr9 68051964 68052142 -56024030 - MIRb SINE MIR -2 206 27 8 1104 1160 240 35 86 chr9 68052406 68052779 -56023393 + ORR1E LTR MaLR 6 359 0 8 1104 232 275 72 0 chr9 68052822 68052891 -56023281 + MIR SINE MIR 67 140 -122 8 1104 347 241 63 70 chr9 68053492 68053635 -56022537 - MLT1H LTR MaLR -27 522 381 8 1104 360 0 0 0 chr9 68053717 68053757 -56022415 + (TTCC)n Simple_repeat Simple_repeat 4 43 0 8 1104 216 0 0 0 chr9 68053757 68053781 -56022391 + (TC)n Simple_repeat Simple_repeat 2 25 0 9 1104 817 258 88 59 chr9 68054128 68054400 -56021772 + B4 SINE B4 5 284 -8 9 1104 678 25 0 0 chr9 68054407 68054487 -56021685 + (CA)n Simple_repeat Simple_repeat 1 80 0 9 1104 189 0 0 0 chr9 68054487 68054507 -56021665 + (GA)n Simple_repeat Simple_repeat 2 22 0 9 1104 249 224 15 0 chr9 68054696 68054763 -56021409 + RCHARR1 DNA MER1_type 62 129 -845 9 1104 1437 228 33 28 chr9 68054796 68055400 -56020772 + RCHARR1 DNA MER1_type 196 860 -114 9 1104 907 152 86 16 chr9 68055386 68055573 -56020599 - B3 SINE B2 0 216 17 9 1104 252 241 54 0 chr9 68055592 68055704 -56020468 + (TTTAA)n Simple_repeat Simple_repeat 3 120 0 9 1104 462 259 80 0 chr9 68055808 68055920 -56020252 + RSINE1 SINE B4 4 124 -41 9 1104 441 0 0 0 chr9 68055936 68055985 -56020187 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1104 1022 203 9 35 chr9 68056118 68056348 -56019824 - MTD LTR MaLR 0 419 196 9 1104 2283 216 20 82 chr9 68056359 68056965 -56019207 - Lx5 LINE L1 -3 7047 6480 1 1104 555 168 0 19 chr9 68056969 68057072 -56019100 - Lx5 LINE L1 -234 6816 6716 1 1104 892 148 127 5 chr9 68057073 68057270 -56018902 - MTD LTR MaLR -198 221 1 9 1104 291 54 0 0 chr9 68058275 68058312 -56017860 + (CAA)n Simple_repeat Simple_repeat 2 38 0 1 1104 1016 232 204 3 chr9 68058339 68058638 -56017534 - MTE2b LTR MaLR -20 359 1 1 1104 306 0 0 0 chr9 68058650 68058684 -56017488 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1104 336 24 0 0 chr9 68060156 68060197 -56015975 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1104 288 0 0 0 chr9 68060451 68060483 -56015689 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1104 808 272 28 23 chr9 68060638 68060856 -56015316 - B4 SINE B4 -73 219 1 1 1104 463 365 35 18 chr9 68062434 68062660 -56013512 + Tigger5 DNA MER2_type 1 230 -2176 1 1104 312 331 24 24 chr9 68062669 68062839 -56013333 + Tigger5 DNA MER2_type 2179 2348 -58 1 1104 398 348 77 41 chr9 68062830 68062891 -56013281 - ID_B1 SINE B4 -10 214 150 1 1104 2659 184 23 26 chr9 68062891 68063421 -56012751 - RLTR11A LTR ERVK 0 528 1 1 1104 398 348 77 41 chr9 68063421 68063554 -56012618 - ID_B1 SINE B4 -75 149 14 1 1104 402 175 25 0 chr9 68064899 68064979 -56011193 + ID4_ SINE ID 2 83 0 1 1104 607 211 65 0 chr9 68066010 68066133 -56010039 + RSINE1 SINE B4 3 133 -32 1 1104 181 107 0 0 chr9 68066211 68066239 -56009933 - MIRc SINE MIR -160 108 81 1 1104 828 274 126 52 chr9 68066690 68067136 -56009036 - RMER5 LTR ERV1 -17 517 39 1 1104 360 0 0 0 chr9 68068087 68068127 -56008045 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1104 687 246 0 27 chr9 68069821 68069967 -56006205 + B1_Mur2 SINE Alu 1 142 -7 1 1104 559 41 0 0 chr9 68070119 68070192 -56005980 - RLTR10E LTR ERVK 0 311 239 1 1104 10893 15 0 1 chr9 68070192 68071443 -56004729 - L1_Mm LINE L1 -1960 3923 2674 1 1104 1738 72 0 0 chr9 68071443 68071679 -56004493 - RLTR10E LTR ERVK -75 236 1 1 1104 331 331 75 23 chr9 68071926 68072059 -56004113 + B4A SINE B4 3 142 -150 1 1104 1529 253 31 48 chr9 68072087 68072544 -56003628 - RMER19C LTR ERVK 0 611 163 1 1104 1080 290 120 37 chr9 68072644 68073102 -56003070 - Lx8 LINE L1 -9 7464 6969 1 1104 1463 119 9 0 chr9 68073104 68073323 -56002849 - URR1A DNA MER1_type 0 226 6 1 1104 1739 249 54 40 chr9 68073343 68073841 -56002331 - Lx8 LINE L1 -522 6951 6447 1 1104 304 114 0 0 chr9 68073844 68073888 -56002284 - Lx8 LINE L1 -1004 6469 6426 1 1104 260 264 256 52 chr9 68074241 68074413 -56001759 + B3 SINE B2 2 208 -8 1 1104 227 229 21 0 chr9 68074511 68074559 -56001613 + GA-rich Low_complexity Low_complexity 1 49 0 1 1104 287 284 52 74 chr9 68076436 68076628 -55999544 - MLT1D LTR MaLR -37 430 264 1 1104 1407 242 41 28 chr9 68077690 68078081 -55998091 - MTD LTR MaLR -14 405 18 1 1104 236 178 0 0 chr9 68079616 68079661 -55996511 + GA-rich Low_complexity Low_complexity 2 46 0 1 1104 595 310 111 8 chr9 68079861 68080105 -55996067 - MTD LTR MaLR -150 269 1 1 1104 1765 147 25 9 chr9 68080680 68080996 -55995176 - ORR1A4 LTR MaLR -8 321 1 1 1104 332 298 29 0 chr9 68081534 68081638 -55994534 - MTE2a LTR MaLR -43 336 230 1 1104 297 246 0 28 chr9 68081966 68082037 -55994135 + B4 SINE B4 14 82 -210 1 1104 423 0 0 0 chr9 68082037 68082084 -55994088 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1104 666 68 0 0 chr9 68082093 68082181 -55993991 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 1104 28 0 0 0 chr9 68083157 68083185 -55992987 + AT_rich Low_complexity Low_complexity 1 28 0 1 1104 1173 54 0 0 chr9 68083376 68083525 -55992647 + (TCTCCC)n Simple_repeat Simple_repeat 2 150 0 1 1104 561 338 111 5 chr9 68083615 68083832 -55992340 + B4 SINE B4 51 290 -2 1 1104 856 247 106 25 chr9 68084624 68084908 -55991264 + ORR1E LTR MaLR 1 325 -54 1 1104 804 92 11 44 chr9 68084908 68085009 -55991163 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 1 1104 1241 0 41 0 chr9 68085009 68085178 -55990994 + (TTTCC)n Simple_repeat Simple_repeat 4 179 0 1 1104 804 92 11 44 chr9 68085178 68085257 -55990915 + (TTCC)n Simple_repeat Simple_repeat 1 79 0 1 1104 419 0 0 19 chr9 68085282 68085334 -55990838 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1 1104 5669 2 0 0 chr9 68085614 68086407 -55989765 - L1Md_A LINE L1 -520 6062 5270 1 1104 4891 8 0 0 chr9 68086407 68086941 -55989231 + L1Md_A LINE L1 6049 6582 0 1 1104 303 242 15 0 chr9 68087970 68088036 -55988136 + ID2 SINE ID 3 69 -14 1 1104 405 0 0 0 chr9 68088036 68088081 -55988091 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1104 853 239 34 0 chr9 68089255 68089464 -55986708 + B3 SINE B2 1 216 0 1 1104 26 0 0 0 chr9 68089828 68089854 -55986318 + AT_rich Low_complexity Low_complexity 1 26 0 1 1104 527 274 63 62 chr9 68089865 68090224 -55985948 - L1ME3 LINE L1 -10 6152 5789 1 1104 244 262 0 16 chr9 68091495 68091557 -55984615 + ID4_ SINE ID 7 67 -16 1 1104 222 180 0 39 chr9 68091564 68091616 -55984556 + (CAGAGA)n Simple_repeat Simple_repeat 5 54 0 1 1104 301 242 4 18 chr9 68091941 68092039 -55984133 - ID4 SINE ID -49 103 7 1 1104 925 234 52 142 chr9 68092129 68092537 -55983635 + MTE2a LTR MaLR 9 379 0 1 1104 207 0 0 0 chr9 68093348 68093371 -55982801 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1104 198 103 0 0 chr9 68094367 68094396 -55981776 + (ATGGTG)n Simple_repeat Simple_repeat 1 29 0 1 1104 360 161 0 0 chr9 68094399 68094480 -55981692 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1104 918 271 22 62 chr9 68094523 68094795 -55981377 - B4A SINE B4 -18 274 14 1 1104 1534 230 6 6 chr9 68094818 68095137 -55981035 - MTEb LTR MaLR -60 319 1 1 1104 186 128 0 0 chr9 68095192 68095231 -55980941 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1104 1030 91 28 7 chr9 68095231 68095375 -55980797 - B1_Mm SINE Alu 0 147 1 1 1104 338 285 141 27 chr9 68095976 68096160 -55980012 + B4A SINE B4 79 283 -9 1 1104 457 146 6 50 chr9 68097046 68097205 -55978967 + (CA)n Simple_repeat Simple_repeat 2 153 0 1 1104 653 199 147 64 chr9 68097639 68097843 -55978329 + ID_B1 SINE B4 4 224 0 1 1104 186 43 0 0 chr9 68099245 68099268 -55976904 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1104 351 44 0 0 chr9 68099282 68099327 -55976845 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1104 914 194 0 0 chr9 68099332 68099492 -55976680 - B3 SINE B2 -56 160 1 1 1104 387 0 0 0 chr9 68099524 68099567 -55976605 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1104 333 0 0 0 chr9 68099809 68099846 -55976326 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1104 586 251 61 11 chr9 68099846 68100020 -55976152 - B3A SINE B2 -13 185 3 1 1104 1027 189 43 19 chr9 68100122 68100332 -55975840 + B3 SINE B2 2 216 0 1 1104 662 286 9 52 chr9 68100600 68100832 -55975340 + B4A SINE B4 3 224 -68 1 1104 219 139 0 0 chr9 68100832 68100868 -55975304 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1 1104 261 277 156 21 chr9 68100882 68100978 -55975194 + B4 SINE B4 163 271 -21 1 1104 450 0 0 0 chr9 68101065 68101115 -55975057 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1104 189 195 0 0 chr9 68101119 68101160 -55975012 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1104 542 291 84 42 chr9 68101503 68101693 -55974479 - B3A SINE B2 0 198 1 1 1104 228 163 0 0 chr9 68102357 68102400 -55973772 + CT-rich Low_complexity Low_complexity 2 44 0 1 1104 745 291 90 12 chr9 68102716 68102960 -55973212 + B4A SINE B4 9 271 -21 1 1104 585 72 0 0 chr9 68102960 68103043 -55973129 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 1104 262 295 6 6 chr9 68103063 68103237 -55972935 + (CATA)n Simple_repeat Simple_repeat 1 174 0 1 1104 1248 27 0 7 chr9 68104998 68105145 -55971027 - B1_Mus1 SINE Alu -1 147 2 1 1104 252 0 0 0 chr9 68105198 68105226 -55970946 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1104 532 283 20 7 chr9 68105291 68105444 -55970728 + MLT1A0 LTR MaLR 194 348 -17 1 1104 387 284 82 4 chr9 68105451 68105684 -55970488 - L1M3 LINE L1 -3129 3011 2761 1 1104 281 315 90 111 chr9 68105670 68105715 -55970457 - L1M3 LINE L1 -3272 2874 2834 1 1104 3177 198 17 5 chr9 68105715 68106310 -55969862 - Lx5 LINE L1 -3 7047 6446 1 1104 281 315 90 111 chr9 68106310 68106385 -55969787 - L1M3 LINE L1 -3313 2833 2786 1 1104 764 254 15 49 chr9 68106385 68106410 -55969762 - B3A SINE B2 0 198 179 1 1104 225 0 0 0 chr9 68106410 68106435 -55969737 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1104 764 254 15 49 chr9 68106435 68106612 -55969560 - B3A SINE B2 -20 178 3 1 1104 953 295 78 16 chr9 68106612 68107014 -55969158 - L1M3 LINE L1 -3361 2785 2362 1 1104 358 296 64 96 chr9 68107043 68107200 -55968972 - MTEa LTR MaLR -227 152 1 1 1104 499 202 110 0 chr9 68108621 68108730 -55967442 - ID_B1 SINE B4 -4 220 100 1 1104 822 248 69 0 chr9 68109480 68109682 -55966490 - ID_B1 SINE B4 -4 220 5 1 1104 432 0 0 0 chr9 68109691 68109739 -55966433 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1104 454 277 39 51 chr9 68109919 68110075 -55966097 - RSINE1 SINE B4 -9 156 3 1 1104 757 246 128 75 chr9 68111181 68111502 -55964670 - MTE2b LTR MaLR -29 350 13 1 1104 484 305 50 10 chr9 68112501 68112703 -55963469 + ID_B1 SINE B4 5 214 -10 1 1104 1379 70 16 16 chr9 68112909 68113098 -55963074 - B2_Mm2 SINE B2 -6 189 1 1 1104 322 269 107 25 chr9 68113135 68113257 -55962915 - MTD LTR MaLR -7 372 241 1 1104 355 302 21 41 chr9 68113296 68113441 -55962731 - MTD LTR MaLR -272 147 6 1 1104 1256 281 16 27 chr9 68113682 68114052 -55962120 - MTEa LTR MaLR -11 368 3 1 1104 218 364 50 33 chr9 68114193 68114375 -55961797 + L4 LINE RTE 1581 1765 -264 1 1104 435 19 0 0 chr9 68114782 68114834 -55961338 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1104 291 346 86 46 chr9 68114865 68115055 -55961117 - B4 SINE B4 -20 272 75 1 1104 1055 231 111 75 chr9 68115055 68115443 -55960729 + MTD LTR MaLR 2 403 -16 1 1104 393 189 14 0 chr9 68115468 68115542 -55960630 - B4 SINE B4 -216 76 2 2 1104 351 246 0 0 chr9 68115828 68115897 -55960275 - ID4_ SINE ID -11 72 4 2 1104 234 0 0 0 chr9 68116234 68116260 -55959912 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1104 1395 257 63 42 chr9 68117050 68117432 -55958740 - Lx8 LINE L1 -892 6581 6192 2 1104 243 88 0 0 chr9 68117633 68117667 -55958505 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1104 295 140 18 0 chr9 68117669 68117726 -55958446 + Lx9 LINE L1 7517 7574 -70 2 1104 429 141 0 0 chr9 68117726 68117797 -55958375 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 1104 941 193 47 43 chr9 68117845 68118056 -55958116 + MTEb LTR MaLR 166 377 -2 2 1104 240 0 24 48 chr9 68118716 68118758 -55957414 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1104 1063 242 52 72 chr9 68119099 68119486 -55956686 + MTE2a LTR MaLR 1 379 0 2 1104 1173 69 0 0 chr9 68119943 68120087 -55956085 - B1_Mus1 SINE Alu 0 148 5 2 1104 203 125 25 0 chr9 68120179 68120219 -55955953 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1104 536 210 6 0 chr9 68120768 68120930 -55955242 + (TG)n Simple_repeat Simple_repeat 1 163 0 2 1104 330 250 0 0 chr9 68120957 68121077 -55955095 + (TG)n Simple_repeat Simple_repeat 2 121 0 2 1104 552 316 87 0 chr9 68121099 68121365 -55954807 - B4A SINE B4 -2 290 2 2 1104 371 321 167 13 chr9 68121712 68122012 -55954160 + MLT1G1 LTR MaLR 148 493 -86 2 1104 815 53 9 0 chr9 68122332 68122445 -55953727 + (TC)n Simple_repeat Simple_repeat 1 114 0 2 1104 212 200 0 83 chr9 68122470 68122530 -55953642 - PB1D10 SINE Alu -1 116 62 2 1104 462 259 168 54 chr9 68122479 68122646 -55953526 - ID_B1 SINE B4 -10 214 29 2 1104 180 221 0 0 chr9 68122678 68122755 -55953417 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1104 249 33 0 0 chr9 68122776 68122806 -55953366 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1104 398 220 0 84 chr9 68122940 68123059 -55953113 - PB1D10 SINE Alu -8 109 1 2 1104 468 0 0 0 chr9 68123551 68123603 -55952569 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1104 923 261 15 38 chr9 68124049 68124316 -55951856 + B4 SINE B4 2 262 -30 2 1104 483 270 19 84 chr9 68124402 68124556 -55951616 + ID_B1 SINE B4 81 224 0 2 1104 233 261 15 0 chr9 68124972 68125037 -55951135 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 1104 693 255 53 21 chr9 68125253 68125441 -55950731 + B3A SINE B2 4 197 -1 2 1104 237 33 0 0 chr9 68125544 68125574 -55950598 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2 1104 1147 46 0 0 chr9 68125576 68125729 -55950443 - B2_Mm2 SINE B2 -42 153 1 2 1104 345 239 120 24 chr9 68125856 68126023 -55950149 - Tigger5 DNA MER2_type -28 2378 2196 2 1104 385 242 11 0 chr9 68126031 68126126 -55950046 + RSINE1 SINE B4 35 130 -35 2 1104 905 229 188 9 chr9 68126207 68126562 -55949610 - MTD LTR MaLR -14 405 3 2 1104 420 343 12 6 chr9 68126939 68127109 -55949063 + MER5B DNA MER1_type 1 171 -7 2 1104 644 288 89 20 chr9 68128029 68128231 -55947941 - ID_B1 SINE B4 -1 223 8 2 1104 575 291 3 38 chr9 68128542 68128708 -55947464 + B3A SINE B2 37 198 0 2 1104 259 276 0 13 chr9 68128876 68128953 -55947219 + MLT1A0 LTR MaLR 263 338 -27 2 1104 475 132 44 0 chr9 68130580 68130694 -55945478 + CT-rich Low_complexity Low_complexity 1 119 0 2 1104 393 225 25 0 chr9 68130880 68130960 -55945212 - ID4_ SINE ID -1 82 1 2 1104 453 36 0 0 chr9 68131814 68131869 -55944303 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1104 450 36 0 0 chr9 68132415 68132471 -55943701 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1104 477 0 0 0 chr9 68132473 68132526 -55943646 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1104 261 0 0 0 chr9 68132526 68132554 -55943618 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1104 481 307 56 60 chr9 68132599 68132814 -55943358 - B4A SINE B4 -74 218 5 2 1104 701 295 62 33 chr9 68132946 68133188 -55942984 + B4 SINE B4 3 251 -41 2 1104 21 0 0 0 chr9 68134056 68134077 -55942095 + AT_rich Low_complexity Low_complexity 1 21 0 2 1104 330 26 0 0 chr9 68134142 68134181 -55941991 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1104 515 311 7 7 chr9 68134181 68134330 -55941842 - B3A SINE B2 -44 154 6 2 1104 256 260 117 15 chr9 68134531 68134700 -55941472 + L1MC4a LINE L1 7732 7975 -20 2 1104 378 0 0 0 chr9 68136423 68136465 -55939707 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 2 1104 1464 251 35 40 chr9 68136782 68137184 -55938988 + MTD LTR MaLR 12 411 -8 2 1104 1482 248 83 0 chr9 68137357 68137744 -55938428 + MTD LTR MaLR 1 419 0 2 1104 192 217 0 0 chr9 68139129 68139175 -55936997 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1104 217 242 0 29 chr9 68139600 68139668 -55936504 + MER5B DNA MER1_type 30 95 -83 2 1104 477 0 0 0 chr9 68140417 68140470 -55935702 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1104 342 0 0 0 chr9 68140470 68140507 -55935665 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1104 1491 256 26 9 chr9 68140769 68141108 -55935064 - MTD LTR MaLR -53 366 22 2 1104 188 111 28 0 chr9 68141109 68141145 -55935027 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1104 231 88 0 0 chr9 68141150 68141184 -55934988 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 1104 197 83 28 0 chr9 68141217 68141253 -55934919 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1104 963 288 32 47 chr9 68141565 68141908 -55934264 - ORR1E LTR MaLR -21 338 1 2 1104 609 14 0 0 chr9 68143253 68143323 -55932849 + (TC)n Simple_repeat Simple_repeat 2 71 0 2 1104 270 0 0 0 chr9 68143323 68143352 -55932820 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1104 590 312 14 47 chr9 68143559 68143771 -55932401 - MTE2a LTR MaLR -8 371 167 2 1104 330 198 107 50 chr9 68143790 68143851 -55932321 - MTD LTR MaLR -14 405 314 2 1104 330 26 0 0 chr9 68143851 68143890 -55932282 + (TTG)n Simple_repeat Simple_repeat 3 41 0 2 1104 330 199 110 51 chr9 68143890 68143954 -55932218 - MTD LTR MaLR -67 352 240 2 1104 606 333 32 16 chr9 68144011 68144261 -55931911 - MTD LTR MaLR -149 270 17 2 1104 286 237 0 62 chr9 68144301 68144382 -55931790 + CT-rich Low_complexity Low_complexity 4 79 0 2 1104 265 216 61 10 chr9 68144923 68145021 -55931151 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 1104 790 254 42 21 chr9 68145308 68145501 -55930671 - ID_B1 SINE B4 -2 222 26 2 1104 306 238 2 22 chr9 68145641 68145731 -55930441 - MTD LTR MaLR -9 410 283 2 1104 303 289 72 84 chr9 68147498 68147514 -55928658 - RSINE1 SINE B4 0 165 155 2 1104 846 0 0 0 chr9 68147514 68147608 -55928564 + (GA)n Simple_repeat Simple_repeat 2 95 0 2 1104 303 289 72 84 chr9 68147608 68147757 -55928415 - RSINE1 SINE B4 -11 154 2 2 1104 2138 169 62 15 chr9 68147781 68148183 -55927989 + MTC LTR MaLR 1 421 0 2 1104 217 197 0 76 chr9 68148450 68148516 -55927656 - MIR SINE MIR -91 171 111 2 1104 441 0 0 0 chr9 68148585 68148634 -55927538 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1104 674 269 43 70 chr9 68148789 68149089 -55927083 - B4A SINE B4 0 292 1 2 1104 300 197 0 57 chr9 68149504 68149574 -55926598 - RSINE1 SINE B4 0 165 100 2 1104 231 234 0 0 chr9 68149811 68149858 -55926314 + T-rich Low_complexity Low_complexity 3 49 0 2 1104 425 280 10 19 chr9 68149884 68150057 -55926115 - L1MA4 LINE L1 -223 5957 5755 2 1104 22 0 0 0 chr9 68150372 68150394 -55925778 + AT_rich Low_complexity Low_complexity 1 22 0 2 1104 298 316 0 0 chr9 68150573 68150652 -55925520 + ID4 SINE ID 1 79 -4 2 1104 809 239 40 67 chr9 68150788 68151012 -55925160 - ID_B1 SINE B4 0 224 7 2 1104 1997 193 50 5 chr9 68152049 68152450 -55923722 - MTD LTR MaLR 0 419 1 2 1104 724 238 180 46 chr9 68153135 68153501 -55922671 - MTD LTR MaLR 0 419 5 2 1104 245 338 12 0 chr9 68153625 68153705 -55922467 - MLT1C LTR MaLR -43 424 344 2 1104 328 207 21 79 chr9 68154604 68154861 -55921311 + (CATATA)n Simple_repeat Simple_repeat 1 242 0 2 1104 247 289 41 0 chr9 68154791 68154888 -55921284 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 2 1104 1168 238 21 28 chr9 68154923 68155208 -55920964 - B4A SINE B4 -1 291 9 2 1104 798 165 12 6 chr9 68156060 68156231 -55919941 + CT-rich Low_complexity Low_complexity 2 173 0 2 1104 435 215 0 0 chr9 68156232 68156311 -55919861 - B3A SINE B2 -116 82 4 2 1104 754 255 100 0 chr9 68156323 68156523 -55919649 - ID_B1 SINE B4 -4 220 1 2 1104 254 309 12 12 chr9 68156581 68156603 -55919569 - Lx8 LINE L1 -167 7306 7285 2 1104 596 97 11 0 chr9 68156603 68156696 -55919476 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 1104 254 309 12 12 chr9 68156696 68156755 -55919417 - Lx8 LINE L1 -189 7284 7226 2 1104 351 0 0 0 chr9 68156758 68156797 -55919375 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1104 1077 290 102 14 chr9 68156998 68157369 -55918803 - Lx8 LINE L1 -2 7471 7068 2 1105 596 300 121 35 chr9 68157674 68158210 -55917962 - L1ME1 LINE L1 -31 6148 5567 2 1105 453 240 21 0 chr9 68158304 68158400 -55917772 - RSINE1 SINE B4 -60 105 8 2 1105 324 236 32 0 chr9 68158512 68158608 -55917564 - PB1D10 SINE Alu -8 112 7 2 1105 472 273 3 5 chr9 68158657 68158848 -55917324 - L1ME1 LINE L1 -761 5385 5196 2 1105 806 230 89 0 chr9 68159186 68159377 -55916795 - B3 SINE B2 -8 208 1 2 1105 4251 58 22 4 chr9 68160179 68160731 -55915441 - L1Md_F2 LINE L1 0 6582 6021 2 1105 10781 64 4 0 chr9 68160731 68162101 -55914071 + L1_Mm LINE L1 3817 5192 -691 2 1105 269 211 26 0 chr9 68162815 68162891 -55913281 + (CATA)n Simple_repeat Simple_repeat 1 78 0 2 1105 359 259 90 90 chr9 68162897 68163041 -55913131 - B4A SINE B4 0 292 149 2 1105 227 406 8 8 chr9 68163265 68163389 -55912783 - MLT1J2 LTR MaLR -281 167 44 3 1105 863 195 0 20 chr9 68163495 68163647 -55912525 + B1_Mur3 SINE Alu 1 149 0 3 1105 424 396 5 5 chr9 68163852 68164055 -55912117 - MLT1J LTR MaLR -204 308 106 3 1105 1189 238 109 44 chr9 68164133 68164542 -55911630 + MTD LTR MaLR 1 389 -30 3 1105 24 0 0 0 chr9 68164768 68164792 -55911380 + AT_rich Low_complexity Low_complexity 1 24 0 3 1105 705 293 125 50 chr9 68164966 68165350 -55910822 + MTD LTR MaLR 1 413 -6 3 1105 248 394 20 62 chr9 68165654 68165800 -55910372 + B4A SINE B4 4 143 -149 3 1105 345 148 0 0 chr9 68166147 68166228 -55909944 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 1105 911 18 9 0 chr9 68166228 68166341 -55909831 + (CA)n Simple_repeat Simple_repeat 1 114 0 3 1105 525 144 0 0 chr9 68167200 68167290 -55908882 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 1105 410 262 39 79 chr9 68167290 68167421 -55908751 - L1MA4 LINE L1 -370 5930 5795 3 1105 2065 195 0 16 chr9 68167421 68167801 -55908371 + ORR1D1 LTR MaLR 1 374 0 3 1105 410 262 39 79 chr9 68167801 68167847 -55908325 - L1MA4 LINE L1 -506 5794 5760 3 1105 224 326 40 30 chr9 68169063 68169164 -55907008 - L2c LINE L2 -30 3357 3256 3 1105 1116 64 0 7 chr9 68169500 68169642 -55906530 + B1_Mm SINE Alu 2 142 -5 3 1105 198 0 0 0 chr9 68169656 68169678 -55906494 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 3 1105 1060 262 115 28 chr9 68170049 68170371 -55905801 - MTEa LTR MaLR -12 367 18 3 1105 3427 8 39 0 chr9 68170486 68170867 -55905305 + MTA_Mm LTR MaLR 1 396 0 3 1105 9721 22 0 0 chr9 68170867 68171965 -55904207 + MTA_Mm-int LTR MaLR 1 1098 0 3 1105 3408 11 39 0 chr9 68171965 68172346 -55903826 + MTA_Mm LTR MaLR 1 396 0 3 1105 7755 67 0 13 chr9 68172357 68173444 -55902728 - L1Md_F2 LINE L1 0 6582 5516 3 1105 1237 221 103 24 chr9 68173883 68174212 -55901960 - ORR1E LTR MaLR -2 357 3 3 1105 194 74 0 0 chr9 68175001 68175028 -55901144 + MER5B DNA MER1_type 151 177 -1 3 1105 282 320 0 37 chr9 68175337 68175444 -55900728 + (CA)n Simple_repeat Simple_repeat 2 104 0 3 1105 488 235 36 11 chr9 68175520 68175668 -55900504 - Lx2B LINE L1 0 7058 6865 3 1105 408 312 75 35 chr9 68175738 68175937 -55900235 + B4 SINE B4 84 290 -2 3 1105 190 274 6 6 chr9 68175942 68176111 -55900061 + (CA)n Simple_repeat Simple_repeat 2 170 0 3 1105 416 316 17 11 chr9 68176136 68176312 -55899860 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 3 1105 592 298 32 23 chr9 68177691 68177911 -55898261 - ID_B1 SINE B4 -1 223 2 3 1105 200 152 43 0 chr9 68178485 68178531 -55897641 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 3 1105 233 364 10 20 chr9 68178869 68178970 -55897202 + MIR3 SINE MIR 78 177 -31 3 1105 655 258 77 59 chr9 68179038 68179291 -55896881 + B4A SINE B4 8 271 -21 3 1105 336 64 0 0 chr9 68179291 68179338 -55896834 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1105 655 258 77 59 chr9 68179338 68179356 -55896816 + B4A SINE B4 272 284 -8 3 1105 225 269 15 15 chr9 68179948 68180016 -55896156 + CT-rich Low_complexity Low_complexity 5 72 0 3 1105 1335 267 20 8 chr9 68181438 68181793 -55894379 - MTEb LTR MaLR -20 359 1 3 1105 207 0 0 0 chr9 68183454 68183477 -55892695 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1105 829 262 48 0 chr9 68183764 68183974 -55892198 - ID_B1 SINE B4 0 224 5 3 1105 187 264 68 14 chr9 68184661 68184734 -55891438 + MIRc SINE MIR 63 139 -129 3 1105 180 0 0 0 chr9 68186323 68186343 -55889829 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1105 333 279 299 20 chr9 68186682 68187026 -55889146 - LTR50 LTR ERVL -277 518 79 3 1105 340 302 40 0 chr9 68187043 68187167 -55889005 + L1_Mm LINE L1 5399 5556 -741 3 1105 243 0 0 0 chr9 68187218 68187245 -55888927 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1105 613 300 52 37 chr9 68187554 68187824 -55888348 - B4 SINE B4 -18 274 1 3 1105 3791 58 6 10 chr9 68187854 68188339 -55887833 - L1Md_F2 LINE L1 -2 6580 6098 3 1105 402 21 0 0 chr9 68189159 68189206 -55886966 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1105 224 256 38 42 chr9 68189673 68189805 -55886367 + MIR SINE MIR 3 137 -131 3 1105 3060 143 29 21 chr9 68190245 68190765 -55885407 + RLTR28 LTR ERVL 1 524 0 3 1105 239 185 0 36 chr9 68190948 68191004 -55885168 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1105 447 19 0 0 chr9 68193424 68193476 -55882696 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1105 1060 76 0 0 chr9 68193481 68193612 -55882560 - B1_Mus1 SINE Alu -17 131 1 3 1105 781 234 11 39 chr9 68193983 68194165 -55882007 - ORR1E LTR MaLR -182 177 1 3 1105 181 289 153 24 chr9 68194310 68194395 -55881777 - MIRb SINE MIR -56 212 117 3 1105 745 280 16 0 chr9 68194534 68194716 -55881456 - ID_B1 SINE B4 -38 186 2 3 1105 221 232 0 0 chr9 68194937 68194993 -55881179 + CT-rich Low_complexity Low_complexity 1 56 0 3 1105 462 75 0 0 chr9 68194993 68195060 -55881112 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 3 1105 234 0 0 0 chr9 68195160 68195186 -55880986 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1105 531 273 186 80 chr9 68196214 68196477 -55879695 + B4 SINE B4 2 292 0 3 1105 283 230 0 0 chr9 68196477 68196551 -55879621 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1105 426 358 11 38 chr9 68197151 68197337 -55878835 - B3A SINE B2 -35 181 1 3 1105 22 35 0 0 chr9 68197959 68197988 -55878184 + AT_rich Low_complexity Low_complexity 1 29 0 3 1105 472 239 114 3 chr9 68198064 68198224 -55877948 - LTR16C LTR ERVL -5 533 348 3 1105 909 235 9 174 chr9 68198424 68198774 -55877398 + B4 SINE B4 1 292 0 3 1105 322 225 138 0 chr9 68199985 68200065 -55876107 + B4A SINE B4 6 96 -196 3 1105 388 244 95 44 chr9 68200110 68200247 -55875925 - B1_Mur3 SINE Alu -1 148 5 3 1105 463 242 33 0 chr9 68201125 68201245 -55874927 + B3A SINE B2 2 125 -73 3 1105 566 299 12 23 chr9 68201330 68201501 -55874671 + B3A SINE B2 2 170 -46 3 1105 676 334 91 19 chr9 68202514 68202877 -55873295 + LTR16A LTR ERVL 18 406 -45 3 1105 347 291 2 8 chr9 68202877 68202973 -55873199 + B4 SINE B4 2 95 -70 3 1105 530 259 121 7 chr9 68202971 68203111 -55873061 + B3A SINE B2 8 163 -35 3 1105 904 193 3 47 chr9 68203175 68203513 -55872659 + MTC LTR MaLR 1 421 0 3 1105 838 284 112 0 chr9 68204524 68204844 -55871328 - ORR1E LTR MaLR -3 356 1 3 1105 979 285 45 25 chr9 68205153 68205549 -55870623 + LTR16B2 LTR ERVL 51 454 -8 3 1105 1202 271 7 7 chr9 68205710 68205993 -55870179 + B4 SINE B4 8 290 -2 3 1105 792 263 20 0 chr9 68207324 68207522 -55868650 - ID_B1 SINE B4 -21 203 2 3 1105 208 77 0 49 chr9 68207775 68207816 -55868356 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 3 1105 999 129 6 11 chr9 68207816 68207996 -55868176 + (GGA)n Simple_repeat Simple_repeat 1 179 0 3 1105 636 307 88 34 chr9 68208050 68208434 -55867738 + LTR40a LTR ERVL 115 519 0 3 1105 813 276 18 27 chr9 68208723 68208943 -55867229 - ID_B1 SINE B4 -1 223 6 3 1105 417 115 0 0 chr9 68209951 68210029 -55866143 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1105 971 214 38 14 chr9 68210534 68210747 -55865425 + ID_B1 SINE B4 7 224 0 3 1105 307 314 9 0 chr9 68211021 68211126 -55865046 - MIR SINE MIR -55 153 48 3 1105 220 85 0 60 chr9 68211151 68211201 -55864971 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1105 182 254 0 27 chr9 68212529 68212602 -55863570 + CT-rich Low_complexity Low_complexity 2 72 0 3 1105 194 222 19 0 chr9 68212676 68212730 -55863442 + CT-rich Low_complexity Low_complexity 1 55 0 3 1105 342 268 0 0 chr9 68212734 68212805 -55863367 - ID4_ SINE ID -11 72 2 3 1105 279 194 95 69 chr9 68213870 68213986 -55862186 + L1MA5 LINE L1 6176 6294 -6 3 1105 525 144 0 0 chr9 68214059 68214149 -55862023 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 1105 195 186 0 0 chr9 68214307 68214350 -55861822 + CT-rich Low_complexity Low_complexity 2 44 0 3 1105 272 143 39 39 chr9 68214508 68214610 -55861562 + (CAGAGA)n Simple_repeat Simple_repeat 3 104 0 3 1105 484 336 44 39 chr9 68215984 68216213 -55859959 - B4A SINE B4 -13 279 50 3 1105 234 45 44 22 chr9 68216714 68216759 -55859413 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1105 797 260 15 5 chr9 68218914 68219111 -55857061 - B3 SINE B2 -14 202 4 3 1105 908 352 7 11 chr9 68219186 68219473 -55856699 + B4A SINE B4 7 292 0 3 1105 297 0 0 0 chr9 68219622 68219655 -55856517 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1105 811 152 6 6 chr9 68221127 68221306 -55854866 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 1105 1107 109 0 0 chr9 68221359 68221524 -55854648 + (TG)n Simple_repeat Simple_repeat 2 166 0 3 1105 648 291 44 6 chr9 68221528 68221711 -55854461 - ID_B1 SINE B4 -32 192 3 3 1105 201 323 0 0 chr9 68222285 68222347 -55853825 + (TATG)n Simple_repeat Simple_repeat 3 64 0 3 1105 621 338 36 18 chr9 68222347 68222627 -55853545 - B4A SINE B4 0 292 8 3 1105 28 0 0 0 chr9 68223025 68223053 -55853119 + AT_rich Low_complexity Low_complexity 1 28 0 3 1105 644 275 63 54 chr9 68223609 68223832 -55852340 + B4 SINE B4 1 225 -67 3 1105 331 55 18 18 chr9 68223832 68223887 -55852285 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 3 1105 696 43 200 25 chr9 68224422 68224542 -55851630 + L1Md_F2 LINE L1 6441 6581 -1 3 1105 198 0 0 0 chr9 68224564 68224586 -55851586 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 3 1105 533 224 112 0 chr9 68224586 68224711 -55851461 - B4 SINE B4 -75 217 79 4 1105 223 297 54 0 chr9 68224747 68224821 -55851351 - B4 SINE B4 -207 85 8 4 1105 693 0 0 0 chr9 68225133 68225210 -55850962 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1105 1142 258 229 10 chr9 68225648 68226142 -55850030 - RMER20B LTR ERVK -25 602 1 4 1105 492 304 0 0 chr9 68226142 68226264 -55849908 + ID_B1 SINE B4 103 224 0 4 1105 210 191 0 0 chr9 68226379 68226421 -55849751 + GA-rich Low_complexity Low_complexity 5 46 0 4 1105 1114 85 6 11 chr9 68226421 68226599 -55849573 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 4 1105 314 277 10 21 chr9 68226624 68226720 -55849452 + B3A SINE B2 70 164 -34 4 1105 360 0 0 0 chr9 68227744 68227784 -55848388 + (CAA)n Simple_repeat Simple_repeat 2 41 0 4 1105 327 214 0 28 chr9 68228288 68228360 -55847812 - Charlie12 DNA MER1_type 0 2873 2804 4 1105 627 291 68 25 chr9 68228545 68228781 -55847391 + B4A SINE B4 9 254 -38 4 1105 298 270 0 133 chr9 68228780 68228908 -55847264 - B4A SINE B4 -139 153 43 4 1105 706 258 80 5 chr9 68229799 68229998 -55846174 - B3 SINE B2 -1 215 2 4 1105 848 247 16 22 chr9 68230841 68231023 -55845149 + B3A SINE B2 1 181 -17 4 1105 791 177 4 0 chr9 68231023 68231264 -55844908 + (CCTA)n Simple_repeat Simple_repeat 1 242 0 4 1105 464 48 16 0 chr9 68231264 68231327 -55844845 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1105 422 256 156 13 chr9 68231355 68231509 -55844663 + B3A SINE B2 2 177 -21 4 1105 26 64 0 0 chr9 68231566 68231613 -55844559 + AT_rich Low_complexity Low_complexity 1 47 0 4 1105 213 182 0 0 chr9 68232269 68232324 -55843848 + CT-rich Low_complexity Low_complexity 2 56 0 4 1105 759 263 33 67 chr9 68232329 68232569 -55843603 - B4A SINE B4 -20 272 41 4 1105 501 271 0 0 chr9 68232771 68232889 -55843283 - MER58A DNA MER1_type -105 119 2 4 1105 1698 140 0 49 chr9 68233030 68233338 -55842834 + Lx2 LINE L1 6704 6996 -1 4 1105 441 0 0 0 chr9 68233340 68233389 -55842783 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1105 496 98 0 58 chr9 68234206 68234293 -55841879 + B1_Mus2 SINE Alu 66 147 0 4 1105 189 0 0 0 chr9 68234293 68234314 -55841858 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1105 837 291 74 23 chr9 68234878 68235135 -55841037 + B4 SINE B4 1 270 -22 4 1105 510 61 0 0 chr9 68235135 68235201 -55840971 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1105 231 200 36 0 chr9 68235210 68235265 -55840907 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 4 1105 8121 64 0 0 chr9 68235813 68237019 -55839153 + L1_Mus1 LINE L1 5362 6567 0 4 1105 486 79 0 0 chr9 68237210 68237286 -55838886 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1105 459 0 0 0 chr9 68237286 68237337 -55838835 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1105 703 289 21 33 chr9 68237381 68237624 -55838548 - B4A SINE B4 -52 240 1 4 1105 232 101 78 11 chr9 68237794 68237884 -55838288 + (TCTG)n Simple_repeat Simple_repeat 4 99 0 4 1105 246 208 0 0 chr9 68238107 68238155 -55838017 - MLT2D LTR ERVL 0 560 513 4 1105 255 156 51 25 chr9 68238156 68238235 -55837937 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1105 345 286 29 0 chr9 68238362 68238467 -55837705 - MTEa LTR MaLR -271 108 1 4 1105 654 304 25 107 chr9 68238467 68238784 -55837388 + B4A SINE B4 2 292 0 4 1105 213 216 20 0 chr9 68238796 68238847 -55837325 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1105 417 175 57 68 chr9 68239480 68239640 -55836532 - PB1D9 SINE Alu -1 148 27 4 1105 4952 80 62 1 chr9 68239640 68240318 -55835854 - L1_Mus4 LINE L1 -7 6629 5911 4 1105 373 188 47 132 chr9 68240318 68240342 -55835830 - PB1D7 SINE Alu -94 26 3 4 1105 421 324 92 6 chr9 68240342 68240511 -55835661 - ID_B1 SINE B4 -36 188 5 4 1105 2717 193 7 1 chr9 68240595 68241083 -55835089 + Lx5 LINE L1 6497 7033 -25 4 1105 513 257 26 0 chr9 68241507 68241620 -55834552 - B3A SINE B2 -81 117 2 4 1105 288 0 0 0 chr9 68241933 68241965 -55834207 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1105 366 199 374 0 chr9 68241990 68242121 -55834051 - MTD LTR MaLR -21 398 219 4 1105 212 0 0 35 chr9 68242122 68242151 -55834021 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1105 1035 203 11 0 chr9 68242170 68242357 -55833815 + Lx9 LINE L1 7052 7240 -404 4 1105 194 277 22 67 chr9 68242456 68242545 -55833627 + L2a LINE L2 3215 3299 -127 4 1105 207 0 0 0 chr9 68243106 68243129 -55833043 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1105 1065 95 13 7 chr9 68243144 68243293 -55832879 + B1_Mur4 SINE Alu 1 150 0 4 1105 342 67 0 0 chr9 68243486 68243531 -55832641 + (TCC)n Simple_repeat Simple_repeat 3 47 0 4 1105 2480 248 40 52 chr9 68243890 68244710 -55831462 + RLTR40 LTR ERVK 1 810 -7 4 1105 280 282 0 40 chr9 68245320 68245394 -55830778 + RSINE1 SINE B4 95 165 0 4 1105 23 0 0 0 chr9 68245682 68245705 -55830467 + AT_rich Low_complexity Low_complexity 1 23 0 4 1105 583 295 81 27 chr9 68245811 68246034 -55830138 + L1MA6 LINE L1 6001 6244 -56 4 1105 254 177 97 0 chr9 68246110 68246172 -55830000 - BC1_Mm scRNA scRNA -84 68 1 4 1105 486 0 0 0 chr9 68246949 68247003 -55829169 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1105 369 0 0 0 chr9 68247003 68247043 -55829129 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1105 755 233 41 0 chr9 68247043 68247215 -55828957 - ID_B1 SINE B4 -45 179 1 4 1105 790 284 60 13 chr9 68247613 68247845 -55828327 - B4 SINE B4 -8 284 42 4 1105 195 345 22 33 chr9 68247882 68247972 -55828200 + L2 LINE L2 2766 2854 -565 4 1105 561 55 0 0 chr9 68248657 68248730 -55827442 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1105 560 276 147 24 chr9 68249321 68249412 -55826760 - B4 SINE B4 -2 290 202 4 1105 540 0 0 0 chr9 68249412 68249472 -55826700 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1105 560 276 147 24 chr9 68249472 68249632 -55826540 - B4 SINE B4 -91 201 9 4 1105 334 312 63 14 chr9 68251760 68251903 -55824269 + MER5A1 DNA MER1_type 13 162 -4 4 1105 258 392 14 7 chr9 68252155 68252299 -55823873 - MER5C1 DNA MER1_type -109 154 10 4 1105 196 157 60 0 chr9 68252478 68252490 -55823682 + (TA)n Simple_repeat Simple_repeat 2 13 0 4 1105 240 35 0 0 chr9 68252490 68252519 -55823653 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1105 196 157 60 0 chr9 68252519 68252589 -55823583 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1105 181 161 0 0 chr9 68252625 68252656 -55823516 - MIR SINE MIR -145 117 87 4 1105 526 273 117 117 chr9 68254011 68254080 -55822092 - B4A SINE B4 0 292 225 4 1105 450 0 0 0 chr9 68254080 68254130 -55822042 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 4 1105 526 273 117 117 chr9 68254130 68254268 -55821904 - B4A SINE B4 -68 224 83 4 1105 258 32 0 0 chr9 68254268 68254299 -55821873 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1105 526 273 117 117 chr9 68254299 68254380 -55821792 - B4A SINE B4 -210 82 5 4 1105 412 99 28 0 chr9 68254839 68254910 -55821262 + (TCCCC)n Simple_repeat Simple_repeat 4 76 0 4 1105 295 286 9 28 chr9 68254910 68255018 -55821154 + CT-rich Low_complexity Low_complexity 4 109 0 4 1105 1252 240 75 9 chr9 68255671 68256016 -55820156 - MTEa LTR MaLR -3 376 9 4 1105 459 132 36 0 chr9 68256028 68256111 -55820061 + RMER1C Other Other 1256 1341 -1 4 1105 3444 78 35 7 chr9 68256187 68256649 -55819523 + MT2C_Mm LTR ERVL 1 475 0 4 1105 1105 272 63 35 chr9 68257246 68257593 -55818579 + ORR1E LTR MaLR 1 357 -2 4 1105 477 0 0 0 chr9 68259507 68259560 -55816612 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1105 522 304 60 57 chr9 68259569 68259868 -55816304 - L1MA4 LINE L1 -1696 6000 5703 4 1105 25 31 0 0 chr9 68259885 68259917 -55816255 + AT_rich Low_complexity Low_complexity 1 32 0 4 1105 4729 191 26 18 chr9 68259917 68260810 -55815362 - Lx5 LINE L1 -3 7047 6148 4 1105 1008 169 26 88 chr9 68260818 68261091 -55815081 + Lx5 LINE L1 5900 6155 -895 4 1105 248 141 156 0 chr9 68261091 68261155 -55815017 + MER5B DNA MER1_type 105 178 0 4 1105 618 269 199 17 chr9 68261678 68261732 -55814440 - B4 SINE B4 -14 278 222 4 1105 240 35 0 0 chr9 68261732 68261761 -55814411 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1105 618 269 199 17 chr9 68261761 68261937 -55814235 - B4 SINE B4 -71 221 7 4 1105 4996 9 0 0 chr9 68262264 68262810 -55813362 - L1Md_T LINE L1 0 6582 6037 4 1105 189 169 16 33 chr9 68263020 68263081 -55813091 + GA-rich Low_complexity Low_complexity 5 64 0 4 1105 523 232 0 23 chr9 68263099 68263271 -55812901 + GA-rich Low_complexity Low_complexity 4 171 0 4 1105 418 295 58 64 chr9 68263949 68264275 -55811897 - L1M5 LINE L1 -2173 3973 3650 4 1105 637 351 86 29 chr9 68264313 68264440 -55811732 - Lx8 LINE L1 -2 7471 7342 4 1105 198 0 0 0 chr9 68264440 68264462 -55811710 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 4 1105 637 351 86 29 chr9 68264462 68264810 -55811362 - Lx8 LINE L1 -132 7341 6971 4 1105 654 302 73 0 chr9 68264888 68265133 -55811039 - L1MA9 LINE L1 -346 5966 5704 4 1105 461 333 63 63 chr9 68265419 68265961 -55810211 - L1MA9 LINE L1 -823 5317 4776 4 1105 1947 164 18 75 chr9 68266083 68266484 -55809688 + ORR1C1 LTR MaLR 1 378 0 4 1105 1026 169 0 6 chr9 68266516 68266695 -55809477 + ORR1A3 LTR MaLR 149 326 0 4 1105 641 256 3 2 chr9 68266732 68266894 -55809278 + B3A SINE B2 5 167 -49 4 1105 254 0 87 0 chr9 68267042 68267088 -55809084 + L1Md_F3 LINE L1 6532 6581 -3 4 1105 186 150 0 0 chr9 68267143 68267183 -55808989 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 4 1105 236 306 67 48 chr9 68267216 68267381 -55808791 - L1M5 LINE L1 -3362 2784 2617 4 1105 189 0 0 0 chr9 68267438 68267459 -55808713 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1105 2074 139 31 0 chr9 68268619 68268936 -55807236 + ORR1A2 LTR MaLR 1 327 0 4 1105 327 104 0 0 chr9 68269089 68269137 -55807035 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 4 1105 204 40 0 0 chr9 68269145 68269170 -55807002 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 4 1105 563 232 163 26 chr9 68270249 68270439 -55805733 - B3 SINE B2 0 216 1 5 1105 822 233 117 43 chr9 68270456 68270806 -55805366 + L1MA8 LINE L1 5908 6283 -8 5 1105 620 231 45 0 chr9 68270819 68270953 -55805219 - B1_Mur1 SINE Alu -8 141 2 5 1105 1143 166 29 10 chr9 68271531 68271738 -55804434 - B3 SINE B2 -1 215 5 5 1105 757 277 141 16 chr9 68272567 68272872 -55803300 - MTD LTR MaLR -16 403 61 5 1105 565 25 25 0 chr9 68273001 68273080 -55803092 + (TG)n Simple_repeat Simple_repeat 1 81 0 5 1105 793 219 108 14 chr9 68273112 68273334 -55802838 - B4A SINE B4 -48 244 2 5 1105 401 270 108 24 chr9 68273670 68273837 -55802335 - MIRb SINE MIR -61 207 27 5 1105 652 294 17 130 chr9 68274756 68274998 -55801174 - B4A SINE B4 -4 288 81 5 1105 1691 181 38 25 chr9 68274998 68275365 -55800807 + ORR1D1 LTR MaLR 3 374 0 5 1105 652 294 17 130 chr9 68275365 68275423 -55800749 - B4A SINE B4 -212 80 22 5 1105 1016 184 119 5 chr9 68275590 68275792 -55800380 - URR1A DNA MER1_type 0 226 2 5 1105 378 0 0 0 chr9 68275821 68275863 -55800309 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1105 572 236 42 0 chr9 68275866 68276010 -55800162 - B3A SINE B2 -48 150 1 5 1105 3167 60 10 8 chr9 68276050 68276450 -55799722 + L1Md_F2 LINE L1 5186 5586 -297 5 1105 8113 49 2 6 chr9 68276450 68277450 -55798722 + L1Md_F2 LINE L1 5587 6582 0 5 1105 927 137 11 6 chr9 68277640 68277816 -55798356 + CT-rich Low_complexity Low_complexity 4 180 0 5 1105 748 231 54 16 chr9 68278069 68278085 -55798087 - B3A SINE B2 -1 197 183 5 1105 393 39 0 0 chr9 68278085 68278136 -55798036 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1105 748 231 54 16 chr9 68278136 68278304 -55797868 - B3A SINE B2 -16 182 6 5 1105 387 167 12 25 chr9 68278571 68278651 -55797521 + MIRb SINE MIR 25 103 -165 5 1105 226 214 54 0 chr9 68279461 68279517 -55796655 + MIRb SINE MIR 180 238 -30 5 1105 537 110 0 0 chr9 68279828 68279928 -55796244 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 1105 360 43 0 0 chr9 68279928 68279974 -55796198 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1105 517 337 12 0 chr9 68279976 68280142 -55796030 - B3A SINE B2 -30 168 1 5 1105 438 244 107 32 chr9 68280434 68280650 -55795522 - L1MEc LINE L1 -3929 2471 2240 5 1105 455 338 20 0 chr9 68280673 68280821 -55795351 - RSINE1 SINE B4 -11 154 4 5 1105 23 33 0 0 chr9 68281177 68281207 -55794965 + AT_rich Low_complexity Low_complexity 1 30 0 5 1105 220 308 19 37 chr9 68281336 68281444 -55794728 + MIRb SINE MIR 123 228 -40 5 1105 759 282 10 5 chr9 68281521 68281717 -55794455 + B3A SINE B2 2 198 0 5 1105 951 294 4 12 chr9 68282073 68282331 -55793841 - B4 SINE B4 -36 256 1 5 1105 204 40 0 0 chr9 68283168 68283193 -55792979 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 1105 333 0 0 0 chr9 68283198 68283235 -55792937 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1105 605 99 11 0 chr9 68283375 68283466 -55792706 + BC1_Mm scRNA scRNA 2 93 -59 5 1105 278 342 93 19 chr9 68283702 68283970 -55792202 + B4A SINE B4 1 288 -4 5 1105 1122 252 11 11 chr9 68284343 68284612 -55791560 + B4A SINE B4 8 276 -16 5 1105 552 169 57 41 chr9 68284790 68284913 -55791259 + B1_Mus2 SINE Alu 2 126 -21 5 1105 660 87 0 0 chr9 68284946 68285038 -55791134 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 1105 517 252 13 50 chr9 68285186 68285345 -55790827 - RSINE1 SINE B4 0 165 13 5 1105 791 132 11 33 chr9 68286520 68286700 -55789472 + GA-rich Low_complexity Low_complexity 3 178 0 5 1105 947 283 39 33 chr9 68286883 68287219 -55788953 - ORR1E LTR MaLR -21 338 1 5 1105 352 208 20 0 chr9 68287350 68287451 -55788721 + CT-rich Low_complexity Low_complexity 2 104 0 5 1105 629 291 6 11 chr9 68287463 68287644 -55788528 - B3A SINE B2 -17 181 2 5 1105 931 209 15 15 chr9 68288170 68288374 -55787798 - B3 SINE B2 0 216 13 5 138 537 278 33 22 chr9 68288387 68288571 -55787601 - L1MB3 LINE L1 0 6183 5998 5 1106 504 299 58 63 chr9 68288679 68289061 -55787111 + L2 LINE L2 1954 2333 -1086 5 1106 821 209 5 67 chr9 68289290 68289500 -55786672 + B3A SINE B2 2 198 0 5 1106 387 0 0 0 chr9 68289543 68289586 -55786586 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1106 444 37 0 0 chr9 68289586 68289640 -55786532 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1106 276 218 0 0 chr9 68290051 68290106 -55786066 - RSINE1 SINE B4 -109 56 2 5 1106 1152 151 13 31 chr9 68290266 68290492 -55785680 + URR1B DNA MER1_type 1 222 -3 5 1106 247 338 26 0 chr9 68290692 68290769 -55785403 + Charlie12 DNA MER1_type 1 79 -2794 5 1106 214 50 0 48 chr9 68290989 68291031 -55785141 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 5 1106 483 75 0 36 chr9 68291191 68291274 -55784898 + L1Md_F2 LINE L1 6503 6582 0 5 1106 204 97 0 0 chr9 68291287 68291318 -55784854 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1106 278 67 0 22 chr9 68291687 68291733 -55784439 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1106 3461 154 0 0 chr9 68292098 68292721 -55783451 - Lx2B LINE L1 -1029 5971 5352 5 1106 1403 146 50 0 chr9 68292723 68292962 -55783210 + Lx3C LINE L1 6357 6607 -369 5 1106 243 146 229 0 chr9 68292965 68293013 -55783159 + Lx3C LINE L1 6738 6796 -180 5 1106 30 0 0 0 chr9 68293013 68293043 -55783129 + AT_rich Low_complexity Low_complexity 1 30 0 5 1106 254 199 82 35 chr9 68293407 68293514 -55782658 + MIR SINE MIR 32 151 -57 5 1106 261 0 0 0 chr9 68293870 68293899 -55782273 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1106 1043 81 0 0 chr9 68294181 68294317 -55781855 + B1_Mm SINE Alu 2 137 -10 5 1106 782 236 6 11 chr9 68294656 68294836 -55781336 - B3A SINE B2 -16 182 4 5 1106 29 0 0 0 chr9 68295566 68295595 -55780577 + AT_rich Low_complexity Low_complexity 1 29 0 5 1106 737 283 53 51 chr9 68295664 68296001 -55780171 - MTE2a LTR MaLR -73 346 18 5 1106 237 203 149 0 chr9 68296372 68296446 -55779726 - L1MEd LINE L1 -5096 1023 939 5 1106 237 203 149 0 chr9 68296459 68296533 -55779639 - L1MEd LINE L1 -5096 1023 939 5 1106 1008 273 19 98 chr9 68297068 68297478 -55778694 - MTE2a LTR MaLR -1 378 1 5 1106 603 265 8 0 chr9 68297867 68297999 -55778173 - RSINE1 SINE B4 -26 139 7 5 1106 8192 1 0 1 chr9 68298119 68299009 -55777163 - L1Md_A LINE L1 0 6582 5694 5 1106 11553 2 0 0 chr9 68299003 68300261 -55775911 + L1Md_A LINE L1 4430 5687 -196 5 1106 22456 59 2 1 chr9 68300725 68304265 -55771907 - L1Md_F2 LINE L1 -1 6581 3039 5 1106 1641 186 19 81 chr9 68304433 68304802 -55771370 - ORR1B1 LTR MaLR -8 386 41 5 1106 1148 132 62 95 chr9 68304809 68305247 -55770925 - ORR1B1-int LTR MaLR 0 1963 1754 5 1106 561 220 42 0 chr9 68305167 68305285 -55770887 - B1_Mus2 SINE Alu -22 125 3 5 1106 516 158 28 65 chr9 68305190 68305298 -55770874 - MT2B LTR ERVL -344 257 154 5 1106 25487 54 9 0 chr9 68305298 68309145 -55767027 - L1Md_F3 LINE L1 0 6584 2704 5 1106 895 56 0 0 chr9 68309145 68309252 -55766920 - U6 snRNA snRNA 0 107 1 5 1106 1102 144 65 42 chr9 68309267 68309484 -55766688 - MT2B LTR ERVL -345 256 35 5 1106 2810 158 69 67 chr9 68309323 68309933 -55766239 - ORR1A3-int LTR MaLR -1192 771 161 5 1106 309 320 15 45 chr9 68310109 68310123 -55766049 - ID_B1 SINE B4 -8 216 87 5 1106 359 299 8 25 chr9 68310123 68310243 -55765929 - B1F1 SINE Alu -26 123 6 5 1106 256 311 32 8 chr9 68310327 68310455 -55765717 - L1MC LINE L1 -1333 4813 4683 5 1106 188 255 0 0 chr9 68310694 68310741 -55765431 - L2a LINE L2 -6 3420 3374 5 1106 636 247 47 12 chr9 68311007 68311179 -55764993 - B3 SINE B2 -2 214 37 5 1106 266 312 38 0 chr9 68311852 68311932 -55764240 - B3 SINE B2 -133 83 1 5 1106 478 356 20 31 chr9 68312276 68312531 -55763641 + L1MC4a LINE L1 6641 6892 -990 5 1106 191 151 22 44 chr9 68312536 68312626 -55763546 + (CAAA)n Simple_repeat Simple_repeat 2 89 0 5 1106 193 0 0 86 chr9 68312628 68312663 -55763509 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1106 590 292 101 112 chr9 68312677 68312961 -55763211 + L1MC4a LINE L1 6894 7183 -699 5 1106 655 268 0 7 chr9 68312961 68313115 -55763057 + RSINE1 SINE B4 3 155 -10 5 1106 590 292 101 112 chr9 68313115 68313133 -55763039 + L1MC4a LINE L1 7184 7184 -698 5 1106 219 69 0 0 chr9 68313133 68313162 -55763010 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 5 1106 590 292 101 112 chr9 68313162 68313731 -55762441 + L1MC4a LINE L1 7184 7756 -126 5 1106 559 243 32 149 chr9 68313978 68314287 -55761885 - B4A SINE B4 -18 274 2 5 1106 620 266 94 0 chr9 68315418 68315610 -55760562 - ID_B1 SINE B4 -14 210 1 5 1106 249 252 109 54 chr9 68316501 68316648 -55759524 - B4 SINE B4 -137 155 1 5 1106 795 238 24 68 chr9 68317182 68317389 -55758783 + B3A SINE B2 1 198 0 5 1106 236 250 0 12 chr9 68317424 68317505 -55758667 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1106 549 259 20 33 chr9 68317860 68318012 -55758160 + RSINE1 SINE B4 12 161 -4 5 1106 216 200 33 16 chr9 68318021 68318082 -55758090 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 5 1106 336 168 10 19 chr9 68318129 68318232 -55757940 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 1106 356 296 22 39 chr9 68318258 68318437 -55757735 + (CA)n Simple_repeat Simple_repeat 2 177 0 5 1106 315 269 11 54 chr9 68318354 68318539 -55757633 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 5 1106 238 323 16 24 chr9 68318471 68318598 -55757574 + (CA)n Simple_repeat Simple_repeat 1 126 0 5 1106 593 202 26 0 chr9 68319234 68319348 -55756824 - PB1D10 SINE Alu 0 117 1 5 1106 1041 158 109 33 chr9 68319516 68319726 -55756446 - URR1A DNA MER1_type 0 226 1 5 1106 618 14 0 0 chr9 68319962 68320033 -55756139 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1106 21 0 0 0 chr9 68320179 68320200 -55755972 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 453 129 0 0 chr9 68320376 68320469 -55755703 + (A)n Simple_repeat Simple_repeat 1 93 0 5 1106 679 311 49 9 chr9 68320477 68320701 -55755471 + B4 SINE B4 56 288 -4 5 1106 195 393 0 0 chr9 68321156 68321240 -55754932 + MIRb SINE MIR 23 106 -162 6 1106 352 275 96 8 chr9 68321344 68321505 -55754667 - MTEa LTR MaLR 0 379 198 6 1106 210 270 0 0 chr9 68321517 68321591 -55754581 + GA-rich Low_complexity Low_complexity 2 75 0 6 1106 563 83 41 16 chr9 68321616 68321739 -55754433 + (GA)n Simple_repeat Simple_repeat 1 126 0 6 1106 324 0 0 0 chr9 68322196 68322232 -55753940 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1106 459 305 20 0 chr9 68322303 68322454 -55753718 + MTD LTR MaLR 18 171 -248 6 1106 609 248 13 32 chr9 68323068 68323222 -55752950 - RSINE1 SINE B4 -3 162 12 6 1106 4947 118 18 6 chr9 68323273 68323999 -55752173 - RMER19A LTR ERVK -2 735 1 6 1106 1983 34 0 0 chr9 68324672 68324905 -55751267 - L1Md_A LINE L1 0 6582 6350 6 1106 373 87 14 28 chr9 68325706 68325777 -55750395 - Lx7 LINE L1 -16 7680 7611 6 1106 889 256 56 8 chr9 68325778 68326030 -55750142 + Lx7 LINE L1 6991 7254 -442 6 1106 435 38 0 0 chr9 68326051 68326104 -55750068 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1106 376 247 11 11 chr9 68327067 68327161 -55749011 - Lx9 LINE L1 -464 7180 7087 6 1106 720 231 121 0 chr9 68327164 68327346 -55748826 - B3 SINE B2 -11 205 2 6 1106 355 293 40 44 chr9 68327724 68327884 -55748288 + L1_Rod LINE L1 5429 5620 -680 6 1106 842 299 74 7 chr9 68328236 68328506 -55747666 + B4A SINE B4 5 292 0 6 1106 363 44 0 0 chr9 68328526 68328571 -55747601 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1106 306 0 0 0 chr9 68329102 68329136 -55747036 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1106 216 0 0 0 chr9 68329136 68329159 -55747013 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1106 257 285 60 46 chr9 68329180 68329331 -55746841 - Lx8 LINE L1 0 7473 7321 6 1106 279 361 8 16 chr9 68329346 68329467 -55746705 - B4A SINE B4 0 292 173 6 1106 1459 263 99 29 chr9 68330048 68330534 -55745638 - Lx8 LINE L1 0 7473 6954 6 1106 842 278 127 65 chr9 68330665 68330740 -55745432 + MLT1D LTR MaLR 1 69 -436 6 1106 859 134 291 6 chr9 68330740 68330912 -55745260 + URR1B DNA MER1_type 5 225 0 6 1106 842 278 127 65 chr9 68330912 68331146 -55745026 + MLT1D LTR MaLR 70 318 -187 6 1106 210 37 0 0 chr9 68331146 68331173 -55744999 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1106 842 278 127 65 chr9 68331173 68331335 -55744837 + MLT1D LTR MaLR 319 501 -4 6 1106 191 36 0 35 chr9 68332158 68332187 -55743985 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 6 1106 195 315 133 44 chr9 68332541 68332654 -55743518 + L2b LINE L2 3248 3370 -5 6 1106 332 331 110 55 chr9 68332903 68333194 -55742978 + MER96B DNA hAT 3 309 -108 6 1106 794 237 0 88 chr9 68333197 68333414 -55742758 - B3A SINE B2 0 198 1 6 1106 376 254 73 85 chr9 68333592 68333779 -55742393 - MLT1B LTR MaLR -4 386 161 6 1106 212 350 9 74 chr9 68334214 68334322 -55741850 - MIRc SINE MIR -55 213 113 6 1106 463 239 295 7 chr9 68335076 68335215 -55740957 + B3A SINE B2 1 179 -19 6 1106 897 62 0 0 chr9 68335215 68335344 -55740828 + (GA)n Simple_repeat Simple_repeat 2 130 0 6 1106 268 240 19 57 chr9 68335576 68335767 -55740405 + CT-rich Low_complexity Low_complexity 1 183 0 6 1106 464 195 75 17 chr9 68335861 68335981 -55740191 + Lx9 LINE L1 7509 7635 -9 6 1106 23 0 0 0 chr9 68335985 68336008 -55740164 + AT_rich Low_complexity Low_complexity 1 23 0 6 1106 337 286 43 7 chr9 68336040 68336181 -55739991 + L1ME4a LINE L1 5780 5925 -199 6 1106 813 247 11 48 chr9 68336931 68337118 -55739054 - B3A SINE B2 -18 180 1 6 1106 677 253 153 48 chr9 68337221 68337470 -55738702 + MTE2a LTR MaLR 105 379 0 6 1106 321 330 73 5 chr9 68337719 68337911 -55738261 - L1M5 LINE L1 -357 5767 5563 6 1106 2476 174 10 10 chr9 68338162 68338556 -55737616 - ORR1B1 LTR MaLR 0 394 1 6 1106 738 283 0 0 chr9 68339092 68339237 -55736935 + RSINE1 SINE B4 1 145 -20 6 1106 511 240 124 37 chr9 68340178 68340420 -55735752 - HAL1 LINE L1 -7 2500 2238 6 1106 507 95 0 0 chr9 68340558 68340632 -55735540 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 1106 2555 255 50 11 chr9 68340762 68341385 -55734787 + Lx8 LINE L1 6825 7471 -2 6 1106 965 290 58 6 chr9 68341428 68341758 -55734414 + L1MA6 LINE L1 5954 6300 0 6 1106 35898 44 3 4 chr9 68341773 68346868 -55729304 + L1Md_Gf LINE L1 401 5589 -297 6 1106 9085 30 0 0 chr9 68346868 68347864 -55728308 + L1Md_T LINE L1 5587 6582 0 6 1106 1652 64 0 0 chr9 68347868 68348070 -55728102 + L1Md_T LINE L1 6381 6582 0 6 1106 35898 42 3 1 chr9 68348070 68348081 -55728091 + L1Md_Gf LINE L1 5590 5600 -286 6 1106 206 306 110 20 chr9 68349682 68349782 -55726390 + MIRb SINE MIR 126 234 -34 6 1106 3501 179 24 15 chr9 68351384 68352041 -55724131 - Lx5 LINE L1 -39 7011 6349 6 1106 1002 252 123 64 chr9 68352236 68352562 -55723610 - ORR1E LTR MaLR -9 350 6 6 1106 234 150 0 0 chr9 68353006 68353046 -55723126 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1106 1163 95 0 7 chr9 68353959 68354107 -55722065 - B1_Mus1 SINE Alu 0 148 2 6 1106 292 236 3 0 chr9 68354294 68354366 -55721806 + MLT1H LTR MaLR 476 549 0 6 1106 549 0 0 0 chr9 68355354 68355415 -55720757 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1106 256 312 12 24 chr9 68355862 68355944 -55720228 + ID2 SINE ID 1 81 -2 6 1106 1522 256 27 21 chr9 68356106 68356478 -55719694 - MTEb LTR MaLR 0 379 6 6 1106 280 327 55 72 chr9 68357120 68357301 -55718871 + MIRc SINE MIR 42 219 -49 6 1106 267 271 43 0 chr9 68357307 68357377 -55718795 - LTR40a LTR ERVL -446 73 1 6 1106 208 147 0 0 chr9 68358044 68358078 -55718094 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1106 334 359 40 30 chr9 68358298 68358499 -55717673 - B3 SINE B2 -13 203 1 6 1106 950 283 80 16 chr9 68359100 68359374 -55716798 + B4A SINE B4 15 283 -9 6 1106 252 0 0 0 chr9 68359447 68359475 -55716697 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1106 690 331 38 28 chr9 68359511 68359800 -55716372 - B4A SINE B4 0 292 1 6 1106 831 268 33 85 chr9 68360518 68360824 -55715348 - B4A SINE B4 0 292 3 6 1106 220 283 33 0 chr9 68361565 68361625 -55714547 + MIRc SINE MIR 85 146 -122 6 1106 444 278 39 8 chr9 68362329 68362456 -55713716 + MTEa LTR MaLR 5 135 -244 6 1106 291 296 155 9 chr9 68362484 68362600 -55713572 + MTEa LTR MaLR 179 311 -48 6 1106 2959 73 58 2 chr9 68362841 68363251 -55712921 - L1_Mur1 LINE L1 -658 5228 4796 6 1106 4125 110 0 38 chr9 68363251 68363830 -55712342 + Lx3A LINE L1 6425 6981 0 6 1106 21 0 0 0 chr9 68363849 68363870 -55712302 + AT_rich Low_complexity Low_complexity 1 21 0 6 1106 357 309 26 35 chr9 68363895 68364009 -55712163 - MER3 DNA MER1_type -50 159 47 6 1106 21 36 0 0 chr9 68365050 68365078 -55711094 + AT_rich Low_complexity Low_complexity 1 28 0 6 1106 193 346 60 54 chr9 68365613 68365781 -55710391 - MIR SINE MIR -91 171 3 6 1106 895 264 5 0 chr9 68365813 68366006 -55710166 - MTE2b LTR MaLR -13 366 173 6 1106 661 261 12 42 chr9 68366030 68366198 -55709974 - RSINE1 SINE B4 0 165 3 6 1106 616 44 33 0 chr9 68366217 68366308 -55709864 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 6 1106 566 316 25 6 chr9 68366332 68366491 -55709681 - MTE2b LTR MaLR -217 162 1 6 1106 1657 271 57 44 chr9 68366714 68367129 -55709043 + L1MB7 LINE L1 5476 5886 -298 6 1106 638 162 29 0 chr9 68367129 68367234 -55708938 + PB1D7 SINE Alu 1 108 -12 6 1106 354 45 0 0 chr9 68367234 68367278 -55708894 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 6 1106 1657 271 57 44 chr9 68367278 68367547 -55708625 + L1MB7 LINE L1 5887 6169 -15 6 1106 641 295 126 101 chr9 68367972 68368518 -55707654 + MLT1F2 LTR MaLR 1 560 0 6 1106 1196 167 40 27 chr9 68368560 68368782 -55707390 + URR1A DNA MER1_type 1 225 -1 6 1106 228 314 81 0 chr9 68368894 68368980 -55707192 + L2b LINE L2 3266 3358 -17 6 1106 212 296 201 29 chr9 68369733 68369907 -55706265 + L2c LINE L2 3114 3317 -70 6 1106 281 368 0 0 chr9 68370278 68370365 -55705807 - MIR3 SINE MIR -53 155 69 6 1106 275 342 24 48 chr9 68370434 68370560 -55705612 - RMER12 LTR ERVK -452 870 748 6 1106 521 159 11 0 chr9 68370672 68370760 -55705412 + MTD LTR MaLR 11 99 -320 6 1106 4498 104 5 5 chr9 68370760 68371883 -55704289 + L1Md_F3 LINE L1 449 1516 -4370 6 1106 25700 37 2 0 chr9 68371874 68374948 -55701224 + L1Md_F3 LINE L1 2086 5163 -723 6 1106 37944 27 1 7 chr9 68374946 68380135 -55696037 + L1Md_T LINE L1 440 5586 -297 6 1106 9025 30 1 0 chr9 68380135 68381130 -55695042 + L1Md_T LINE L1 5587 6582 0 6 1106 3678 48 0 0 chr9 68381130 68381570 -55694602 + L1Md_F3 LINE L1 5149 5588 -298 6 1106 8614 34 11 1 chr9 68381571 68382545 -55693627 + L1Md_F3 LINE L1 5590 6573 -14 6 1106 291 85 0 0 chr9 68382579 68382626 -55693546 + (T)n Simple_repeat Simple_repeat 1 47 0 6 1106 1193 96 0 0 chr9 68382626 68382772 -55693400 - B1_Mus1 SINE Alu 0 148 3 6 1106 863 278 101 8 chr9 68382776 68383044 -55693128 + MTD LTR MaLR 112 404 -15 6 1106 249 33 0 0 chr9 68383055 68383085 -55693087 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1106 474 344 65 30 chr9 68383796 68383997 -55692175 - MLT2F LTR ERVL -234 429 222 6 1106 521 273 14 0 chr9 68384065 68384204 -55691968 - MLT1D LTR MaLR -10 495 355 6 1106 337 353 23 23 chr9 68384406 68384583 -55691589 - ERVL-E-int LTR ERVL -385 5329 5153 6 1106 1615 332 73 50 chr9 68384669 68385758 -55690414 - ERVL-E-int LTR ERVL -589 5078 3965 6 1106 190 302 70 78 chr9 68385783 68385898 -55690274 + L3 LINE CR1 755 868 -3621 6 1106 298 294 0 0 chr9 68385900 68385968 -55690204 - ERVL-E-int LTR ERVL -3472 2195 2128 6 1106 305 333 7 22 chr9 68386113 68386251 -55689921 - ERVL-E-int LTR ERVL -3721 1993 1858 6 1106 608 305 88 19 chr9 68386374 68386805 -55689367 + L1M5 LINE L1 2750 3210 -2936 6 1106 383 239 189 12 chr9 68386805 68387029 -55689143 + L1ME3A LINE L1 5681 5948 -225 6 1106 346 206 0 0 chr9 68387203 68387266 -55688906 + B3A SINE B2 34 96 -102 6 1106 498 57 0 0 chr9 68387272 68387342 -55688830 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 6 1106 731 264 24 12 chr9 68387892 68388057 -55688115 + B3 SINE B2 4 170 -46 7 1106 461 267 34 12 chr9 68388166 68388323 -55687849 + B4A SINE B4 84 249 -43 7 1106 288 0 0 0 chr9 68388339 68388371 -55687801 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1106 297 0 0 0 chr9 68388371 68388403 -55687769 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1106 317 299 163 0 chr9 68388689 68388836 -55687336 + MER58A DNA MER1_type 47 217 -7 7 1106 6330 210 33 61 chr9 68388908 68391284 -55684888 + Lx4B LINE L1 4754 7057 -1 7 1106 245 160 0 0 chr9 68391625 68391675 -55684497 + Lx8 LINE L1 7424 7473 0 7 1106 309 354 31 12 chr9 68392043 68392203 -55683969 - L1M5 LINE L1 -462 5662 5500 7 1106 243 61 0 0 chr9 68392652 68392685 -55683487 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1106 429 304 35 29 chr9 68393973 68394146 -55682026 + B4A SINE B4 2 175 -117 7 1106 306 333 11 0 chr9 68394233 68394326 -55681846 + (CA)n Simple_repeat Simple_repeat 1 94 0 7 1106 310 308 103 14 chr9 68395425 68395639 -55680533 - L2 LINE L2 -1930 1489 1257 7 1106 439 283 130 7 chr9 68395892 68396038 -55680134 + B4 SINE B4 55 218 -74 7 1106 201 147 0 0 chr9 68396143 68396177 -55679995 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1106 854 236 91 21 chr9 68396660 68396902 -55679270 + ORR1E LTR MaLR 100 358 -1 7 1106 312 158 0 0 chr9 68397552 68397609 -55678563 + (TTG)n Simple_repeat Simple_repeat 2 58 0 7 1106 222 220 20 0 chr9 68398360 68398410 -55677762 + CT-rich Low_complexity Low_complexity 3 53 0 7 1106 297 329 56 14 chr9 68398501 68398643 -55677529 - Lx8 LINE L1 -252 7221 7074 7 1106 204 200 0 0 chr9 68398743 68398778 -55677394 + polypyrimidine Low_complexity Low_complexity 3 37 0 7 1106 1323 104 6 0 chr9 68398957 68399140 -55677032 + B2_Mm1t SINE B2 2 185 -8 7 1106 188 235 20 0 chr9 68399703 68399754 -55676418 - MIRc SINE MIR -52 216 165 7 1106 224 330 60 0 chr9 68399911 68400011 -55676161 + MIRb SINE MIR 111 216 -52 7 1106 280 143 0 182 chr9 68400364 68400441 -55675731 - RMER12 LTR ERVK -265 1057 995 7 1106 1366 54 48 26 chr9 68400444 68400633 -55675539 + B2_Mm2 SINE B2 1 193 -2 7 1106 1483 64 0 19 chr9 68400913 68401120 -55675052 - L1Md_F2 LINE L1 -12 6570 6368 7 1106 513 47 0 0 chr9 68401624 68401688 -55674484 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1106 216 0 0 0 chr9 68401958 68401982 -55674190 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1106 558 0 0 0 chr9 68401982 68402043 -55674129 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1106 669 273 13 0 chr9 68403601 68403755 -55672417 + B3A SINE B2 1 156 -42 7 1106 198 71 0 0 chr9 68403756 68403784 -55672388 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1106 2006 157 14 52 chr9 68403787 68404156 -55672016 - ORR1B2 LTR MaLR -7 360 6 7 1106 351 0 0 0 chr9 68404158 68404197 -55671975 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1106 847 228 162 59 chr9 68404269 68404609 -55671563 + MTE2b LTR MaLR 5 379 0 7 1106 261 0 0 0 chr9 68405908 68405937 -55670235 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 7 1106 270 0 0 0 chr9 68406415 68406445 -55669727 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1106 545 191 230 25 chr9 68407400 68407561 -55668611 + B3A SINE B2 2 195 -3 7 1106 490 313 20 13 chr9 68408302 68408451 -55667721 + RSINE1 SINE B4 2 151 -14 7 1106 482 46 0 15 chr9 68408462 68408528 -55667644 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1106 25 31 0 0 chr9 68408548 68408580 -55667592 + AT_rich Low_complexity Low_complexity 1 32 0 7 1106 890 275 35 25 chr9 68409149 68409432 -55666740 + B4 SINE B4 3 288 -4 7 1106 603 305 42 11 chr9 68410494 68410759 -55665413 - B4A SINE B4 -19 273 1 7 1106 451 217 68 17 chr9 68410795 68410912 -55665260 + B3A SINE B2 57 179 -19 7 1106 395 310 103 0 chr9 68411319 68411493 -55664679 + MIRb SINE MIR 68 259 -9 7 1106 312 236 59 29 chr9 68412111 68412281 -55663891 + (CACCT)n Simple_repeat Simple_repeat 2 176 0 7 1106 1092 292 24 27 chr9 68413406 68413744 -55662428 - ORR1E LTR MaLR -17 342 6 7 1106 1251 175 4 13 chr9 68413826 68414052 -55662120 - URR1A DNA MER1_type -1 225 2 7 1106 207 0 0 0 chr9 68414284 68414307 -55661865 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1106 1020 263 23 52 chr9 68414546 68414855 -55661317 - MTE2a LTR MaLR 0 379 80 7 1106 1721 110 15 8 chr9 68414895 68415160 -55661012 + L1Md_F2 LINE L1 6316 6582 0 7 1106 274 386 27 23 chr9 68416195 68416415 -55659757 + LTR16A1 LTR ERVL 168 388 -68 7 1106 433 275 105 60 chr9 68416425 68416532 -55659640 - Tigger7 DNA MER2_type -5 2486 2383 7 1106 476 287 53 58 chr9 68416532 68416696 -55659476 - B3 SINE B2 -6 210 47 7 1106 465 71 0 0 chr9 68416696 68416766 -55659406 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 7 1106 476 287 53 58 chr9 68416766 68416808 -55659364 - B3 SINE B2 -170 46 5 7 1106 433 275 105 60 chr9 68416808 68416967 -55659205 - Tigger7 DNA MER2_type -109 2382 2209 7 1106 431 298 101 6 chr9 68417114 68417283 -55658889 + Tigger7 DNA MER2_type 124 308 -2183 7 1106 226 308 154 0 chr9 68417289 68417380 -55658792 - Tigger7 DNA MER2_type -2370 121 17 7 1106 378 0 0 0 chr9 68417507 68417549 -55658623 + (TTA)n Simple_repeat Simple_repeat 2 43 0 7 1106 257 359 27 27 chr9 68417847 68417993 -55658179 + MER5A DNA MER1_type 19 164 -25 7 1106 385 242 31 31 chr9 68419315 68419413 -55656759 + RSINE1 SINE B4 24 121 -44 7 1106 558 0 0 0 chr9 68419413 68419475 -55656697 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1107 216 0 0 0 chr9 68419715 68419739 -55656433 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1107 1017 24 0 0 chr9 68419739 68419862 -55656310 + (GA)n Simple_repeat Simple_repeat 1 124 0 7 1107 305 215 104 172 chr9 68419862 68419935 -55656237 + B4A SINE B4 141 216 -76 7 1107 718 290 21 5 chr9 68419935 68420129 -55656043 + B3A SINE B2 1 197 -1 7 1107 305 215 104 172 chr9 68420129 68420218 -55655954 + B4A SINE B4 217 292 0 7 1107 293 333 0 0 chr9 68420219 68420306 -55655866 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 1107 332 312 70 8 chr9 68420309 68420438 -55655734 + MER5A DNA MER1_type 53 189 0 7 1107 1186 240 61 17 chr9 68420973 68421270 -55654902 + ORR1D2 LTR MaLR 3 312 -58 7 1107 488 275 88 10 chr9 68421349 68421622 -55654550 - MTEa LTR MaLR 0 379 20 7 1107 1383 143 4 18 chr9 68421931 68422158 -55654014 - URR1A DNA MER1_type -2 224 1 7 1107 38 0 0 0 chr9 68422704 68422742 -55653430 + AT_rich Low_complexity Low_complexity 1 38 0 7 1107 295 303 22 78 chr9 68422742 68422921 -55653251 - MIR SINE MIR -10 252 84 7 1107 766 262 15 53 chr9 68423106 68423312 -55652860 + B3A SINE B2 1 198 0 7 1107 985 243 71 0 chr9 68423397 68423652 -55652520 + B4A SINE B4 1 273 -19 7 1107 217 290 0 0 chr9 68423655 68423717 -55652455 + (CCA)n Simple_repeat Simple_repeat 1 62 0 7 1107 29620 127 9 4 chr9 68424132 68430051 -55646121 - L1_Mus3 LINE L1 -1 6637 691 7 1107 1742 207 75 18 chr9 68430181 68430674 -55645498 - RLTR11A2 LTR ERVK 0 527 7 7 1107 1951 304 61 18 chr9 68430692 68431076 -55645096 - Lx8 LINE L1 -211 7262 6845 7 1107 1430 74 21 0 chr9 68431076 68431266 -55644906 + B2_Mm2 SINE B2 2 195 0 7 1107 1951 304 61 18 chr9 68431266 68431534 -55644638 - Lx8 LINE L1 -629 6844 6582 7 1107 854 90 0 8 chr9 68432657 68432780 -55643392 + B1_Mus2 SINE Alu 1 122 -25 7 1107 312 318 43 62 chr9 68432946 68433107 -55643065 + MER63A DNA AcHobo 15 172 -38 7 1107 354 136 55 0 chr9 68434039 68434149 -55642023 + (CAGA)n Simple_repeat Simple_repeat 4 119 0 7 1107 708 249 93 9 chr9 68434293 68434508 -55641664 + B4A SINE B4 1 233 -59 7 1107 510 46 0 0 chr9 68434522 68434587 -55641585 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1107 367 115 0 44 chr9 68434590 68434681 -55641491 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 7 1107 180 77 0 0 chr9 68434718 68434744 -55641428 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 7 1107 691 228 0 22 chr9 68434753 68434892 -55641280 + ID_B1 SINE B4 79 214 -10 7 1107 415 254 186 5 chr9 68437768 68437989 -55638183 - MLT1C LTR MaLR -130 337 77 7 1107 250 246 32 95 chr9 68439445 68439571 -55636601 + MLT1C LTR MaLR 59 176 -291 7 1107 298 348 75 28 chr9 68439583 68439796 -55636376 + MLT1C LTR MaLR 229 451 -16 7 1107 198 0 0 0 chr9 68439925 68439947 -55636225 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1107 271 202 238 0 chr9 68441466 68441550 -55634622 - MTE2a LTR MaLR 0 379 276 7 1107 188 267 49 16 chr9 68441625 68441686 -55634486 + L2c LINE L2 3253 3315 -72 7 1107 1181 247 85 25 chr9 68441889 68442265 -55633907 + MTD LTR MaLR 1 419 0 7 1107 378 0 0 0 chr9 68442667 68442709 -55633463 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 7 1107 333 219 37 30 chr9 68442951 68443065 -55633107 - Lx7 LINE L1 -616 6857 6724 7 1107 385 301 32 70 chr9 68443234 68443420 -55632752 + Lx9 LINE L1 6957 7135 -509 7 1107 396 0 0 0 chr9 68443474 68443518 -55632654 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1107 238 235 106 19 chr9 68443518 68443622 -55632550 + Lx9 LINE L1 7517 7629 -15 7 1107 630 228 153 32 chr9 68444083 68444273 -55631899 + B3 SINE B2 1 213 -3 7 1107 533 289 82 48 chr9 68444964 68445233 -55630939 + B4 SINE B4 3 280 -12 7 1107 1209 55 5 18 chr9 68445314 68445538 -55630634 + (TAGA)n Simple_repeat Simple_repeat 1 220 0 7 1107 764 206 14 0 chr9 68446514 68446655 -55629517 + B1_Mus2 SINE Alu 4 146 -1 7 1107 2700 114 0 2 chr9 68446660 68447072 -55629100 + L1VL4 LINE L1 518 928 -5374 7 1107 329 341 23 17 chr9 68447462 68447635 -55628537 - L1M5 LINE L1 -529 5711 5538 7 1107 784 206 116 5 chr9 68449247 68449437 -55626735 + B3 SINE B2 3 213 -3 8 1107 207 0 0 0 chr9 68449467 68449490 -55626682 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 8 1107 540 321 118 42 chr9 68449490 68450040 -55626132 - L1M5 LINE L1 -2962 3184 2593 7 1107 26 50 0 0 chr9 68450307 68450347 -55625825 + AT_rich Low_complexity Low_complexity 1 40 0 8 1107 295 243 122 0 chr9 68450349 68450423 -55625749 - ID4_ SINE ID 0 83 1 8 1107 293 356 51 15 chr9 68450434 68450571 -55625601 - B1F SINE Alu -5 144 3 8 1107 673 259 54 5 chr9 68450920 68451106 -55625066 + B3A SINE B2 4 198 0 8 1107 588 235 28 30 chr9 68452751 68452935 -55623237 + B3 SINE B2 3 179 -14 8 1107 1655 253 105 21 chr9 68452958 68453721 -55622451 + L1MA6 LINE L1 3985 4811 -1332 8 1107 321 26 0 0 chr9 68453739 68453777 -55622395 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1107 1768 184 114 5 chr9 68453778 68454145 -55622027 - MTC LTR MaLR -14 407 1 8 1107 582 212 108 6 chr9 68454153 68454319 -55621853 + L1MA6 LINE L1 4870 5052 -1088 8 1107 804 249 27 6 chr9 68454319 68454531 -55621641 + B3A SINE B2 2 216 0 8 1107 1540 244 76 38 chr9 68454539 68455238 -55620934 + L1MA6 LINE L1 5015 5782 -518 8 1107 2111 202 32 2 chr9 68455238 68455645 -55620527 + MTC LTR MaLR 3 421 0 8 1107 1540 270 123 44 chr9 68455645 68455914 -55620258 + L1MA6 LINE L1 5783 6060 -240 8 1107 441 0 0 0 chr9 68456059 68456108 -55620064 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1107 878 311 18 33 chr9 68456108 68456381 -55619791 - B4 SINE B4 -23 269 1 8 1107 257 289 49 16 chr9 68456392 68456515 -55619657 + L1MB8 LINE L1 6037 6163 -15 8 1107 491 340 28 33 chr9 68456602 68456815 -55619357 + ID_B1 SINE B4 9 220 -4 8 1107 237 196 0 0 chr9 68456843 68456894 -55619278 + GA-rich Low_complexity Low_complexity 3 53 0 8 1107 186 143 0 0 chr9 68457105 68457140 -55619032 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1107 30 0 0 0 chr9 68457144 68457174 -55618998 + AT_rich Low_complexity Low_complexity 1 30 0 8 1107 1981 179 36 21 chr9 68457634 68458022 -55618150 - ORR1B1 LTR MaLR 0 394 1 8 1107 1385 187 22 4 chr9 68458215 68458489 -55617683 - ORR1C1 LTR MaLR -97 281 3 8 1107 252 0 0 0 chr9 68458577 68458605 -55617567 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1107 335 283 94 78 chr9 68458632 68458812 -55617360 - B4 SINE B4 -69 223 41 8 1107 297 0 0 0 chr9 68459651 68459684 -55616488 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1107 315 0 0 0 chr9 68459684 68459718 -55616454 + (GA)n Simple_repeat Simple_repeat 1 35 0 8 1107 499 313 7 0 chr9 68459732 68459882 -55616290 - RSINE1 SINE B4 -12 153 3 8 1107 399 270 94 17 chr9 68459972 68460153 -55616019 - B3A SINE B2 -2 196 2 8 1107 208 348 17 17 chr9 68460184 68460301 -55615871 - MIRb SINE MIR -102 166 50 8 1107 337 183 76 47 chr9 68460904 68461076 -55615096 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 8 1107 287 309 73 66 chr9 68461821 68462095 -55614077 - AmnSINE1 SINE SINE -83 492 217 8 1107 319 255 86 90 chr9 68462455 68462756 -55613416 + MTEa LTR MaLR 1 365 -14 8 1107 949 195 296 26 chr9 68464790 68465138 -55611034 + RMER10A LTR ERVL 1 442 0 8 1107 235 397 25 13 chr9 68465696 68465854 -55610318 - MER5A1 DNA MER1_type -5 161 2 8 1107 372 206 26 0 chr9 68465893 68465980 -55610192 + PB1D10 SINE Alu 23 120 -7 8 1107 698 259 35 6 chr9 68465986 68466157 -55610015 + B3A SINE B2 3 178 -20 8 1107 1238 246 97 19 chr9 68469210 68469570 -55606602 + MTD LTR MaLR 18 405 -14 8 1107 405 0 0 0 chr9 68469776 68469821 -55606351 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1107 195 42 0 0 chr9 68470507 68470531 -55605641 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1107 655 194 35 14 chr9 68470545 68470686 -55605486 - B1F2 SINE Alu -4 145 2 8 1107 793 216 32 49 chr9 68471228 68471413 -55604759 + B3A SINE B2 1 182 -16 8 1107 23 0 0 0 chr9 68471428 68471451 -55604721 + AT_rich Low_complexity Low_complexity 1 23 0 8 1107 430 312 37 52 chr9 68471866 68472004 -55604168 - Ricksha DNA MuDR -662 2584 2443 8 1107 522 0 0 0 chr9 68472004 68472062 -55604110 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1107 430 312 37 52 chr9 68472062 68472193 -55603979 - Ricksha DNA MuDR -804 2442 2319 8 1107 252 0 0 0 chr9 68472434 68472462 -55603710 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1107 1329 266 50 45 chr9 68472571 68473056 -55603116 - Ricksha DNA MuDR -911 2335 1849 8 1107 256 322 59 0 chr9 68473133 68473251 -55602921 - Ricksha DNA MuDR -3113 133 9 8 1107 579 216 179 0 chr9 68473341 68473503 -55602669 + B3A SINE B2 2 192 -6 8 1107 374 332 66 51 chr9 68474788 68475121 -55601051 - L1MC4 LINE L1 -3734 2481 2144 8 1107 357 187 86 21 chr9 68475479 68475572 -55600600 - ORR1C2 LTR MaLR 0 384 286 8 1107 241 191 0 0 chr9 68475638 68475680 -55600492 - MT2A LTR ERVL -400 133 92 8 1107 508 214 56 0 chr9 68475708 68475834 -55600338 - MT2A LTR ERVL -400 133 1 8 1107 362 249 57 0 chr9 68475959 68476071 -55600101 - PB1D10 SINE Alu 0 120 1 8 1107 552 116 0 0 chr9 68476133 68476219 -55599953 + (TA)n Simple_repeat Simple_repeat 2 87 0 8 1107 22 35 0 0 chr9 68476544 68476573 -55599599 + AT_rich Low_complexity Low_complexity 1 29 0 8 1107 1088 279 13 43 chr9 68477025 68477325 -55598847 + B4A SINE B4 2 292 0 8 1107 468 77 0 0 chr9 68477825 68477890 -55598282 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1107 431 292 6 18 chr9 68478643 68478807 -55597365 + LTR16D LTR ERVL 489 650 -1 8 1107 667 347 60 23 chr9 68478819 68479167 -55597005 - Charlie25 DNA MER1_type -217 2307 1947 8 1107 1050 281 40 17 chr9 68479345 68479696 -55596476 - Lx9 LINE L1 -190 7454 7096 8 1107 346 328 24 24 chr9 68479754 68479963 -55596209 - L1M5 LINE L1 -747 5697 5489 8 1107 679 288 11 11 chr9 68479989 68480168 -55596004 + B3A SINE B2 4 182 -16 8 1107 21 0 0 0 chr9 68480170 68480191 -55595981 + AT_rich Low_complexity Low_complexity 1 21 0 8 1107 284 114 68 0 chr9 68480510 68480598 -55595574 + (TCTG)n Simple_repeat Simple_repeat 2 95 0 8 1107 824 275 10 5 chr9 68480604 68480798 -55595374 - ID_B1 SINE B4 -29 195 1 8 1107 306 261 0 0 chr9 68480973 68481038 -55595134 + ID_B1 SINE B4 145 209 -15 8 1107 1083 238 5 0 chr9 68481094 68481304 -55594868 + B3 SINE B2 1 211 -5 8 1107 469 309 51 7 chr9 68481718 68481855 -55594317 + B4 SINE B4 142 284 -8 8 1107 306 0 0 0 chr9 68481895 68481929 -55594243 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 8 1107 1021 261 42 29 chr9 68481942 68482254 -55593918 - ORR1E LTR MaLR -34 325 10 8 1107 28 29 0 0 chr9 68482371 68482406 -55593766 + AT_rich Low_complexity Low_complexity 1 35 0 8 1107 788 235 11 16 chr9 68482817 68482999 -55593173 - B3A SINE B2 -16 182 2 8 1107 229 279 0 14 chr9 68483644 68483713 -55592459 + L2a LINE L2 3340 3407 -19 8 1107 609 255 13 20 chr9 68483813 68483965 -55592207 - RSINE1 SINE B4 -10 155 5 8 1107 258 81 0 0 chr9 68484819 68484856 -55591316 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 8 1107 418 307 51 19 chr9 68485035 68485191 -55590981 + ORR1E LTR MaLR 2 162 -197 8 1107 201 184 26 0 chr9 68485811 68485849 -55590323 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1107 295 324 18 18 chr9 68485983 68486093 -55590079 + MLT1I LTR MaLR 57 166 -245 8 1107 251 294 0 14 chr9 68487375 68487444 -55588728 - RMER30 DNA MER1_type -23 179 112 8 1107 432 0 0 0 chr9 68487448 68487496 -55588676 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 1107 285 51 0 0 chr9 68487496 68487534 -55588638 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1107 216 86 0 0 chr9 68487534 68487569 -55588603 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1107 187 203 31 0 chr9 68487651 68487715 -55588457 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1107 375 325 99 35 chr9 68487719 68487891 -55588281 - B3A SINE B2 -13 185 3 8 1107 315 228 114 0 chr9 68488166 68488245 -55587927 - RMER30 DNA MER1_type -114 88 1 8 1107 575 264 12 42 chr9 68489464 68489630 -55586542 + RSINE1 SINE B4 5 165 0 8 1107 320 176 0 14 chr9 68490022 68490091 -55586081 + GA-rich Low_complexity Low_complexity 4 71 0 8 1107 747 289 23 14 chr9 68490198 68490419 -55585753 - ID_B1 SINE B4 0 224 2 8 1107 759 298 10 0 chr9 68490905 68491110 -55585062 + ID_B1 SINE B4 1 207 -17 8 1107 606 200 52 75 chr9 68491123 68491296 -55584876 + MER5B DNA MER1_type 2 170 -8 8 1107 411 262 66 55 chr9 68491727 68491909 -55584263 + B3A SINE B2 5 188 -7 8 1107 2844 165 37 29 chr9 68492112 68492656 -55583516 + Lx4A LINE L1 6497 7044 -14 8 1107 486 0 0 0 chr9 68492657 68492711 -55583461 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 1107 247 278 38 45 chr9 68493096 68493228 -55582944 - MER5A DNA MER1_type 0 189 59 8 1107 1299 249 36 25 chr9 68493336 68493699 -55582473 - MTE2b LTR MaLR -4 375 9 8 1107 903 287 0 0 chr9 68493931 68494147 -55582025 - ID_B1 SINE B4 0 224 9 8 1107 314 261 11 0 chr9 68494366 68494454 -55581718 - MER3 DNA MER1_type 0 209 121 8 1107 599 237 0 0 chr9 68494454 68494593 -55581579 + L1MC LINE L1 4748 4886 -1260 8 1107 481 289 45 13 chr9 68495052 68495206 -55580966 - B3 SINE B2 -4 212 54 8 1107 243 88 0 0 chr9 68495209 68495243 -55580929 + (GGA)n Simple_repeat Simple_repeat 3 36 0 8 1107 1298 73 6 0 chr9 68495243 68495422 -55580750 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 8 1107 192 135 0 0 chr9 68495779 68495816 -55580356 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1107 238 350 15 111 chr9 68495919 68496054 -55580118 - ORR1E LTR MaLR -183 176 55 8 1107 1205 226 124 52 chr9 68496758 68497163 -55579009 + Lx8 LINE L1 6966 7387 -86 8 1107 912 237 58 0 chr9 68497222 68497429 -55578743 + ID_B1 SINE B4 5 223 -1 8 1107 484 204 51 21 chr9 68498723 68498842 -55577330 - B1_Mur1 SINE Alu 0 149 30 9 1107 1117 289 123 47 chr9 68498931 68499638 -55576534 + Lx9 LINE L1 6884 7644 0 9 1107 21 0 0 0 chr9 68500125 68500146 -55576026 + AT_rich Low_complexity Low_complexity 1 21 0 1 1107 189 0 0 0 chr9 68500793 68500814 -55575358 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1107 201 74 0 0 chr9 68501499 68501526 -55574646 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1107 480 18 0 0 chr9 68504290 68504347 -55571825 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1107 378 0 0 0 chr9 68506025 68506067 -55570105 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1107 881 205 4 163 chr9 68506469 68506720 -55569452 - B4A SINE B4 0 292 82 6 1107 3137 31 7 59 chr9 68506733 68507141 -55569031 - L1Md_F3 LINE L1 -3 6581 6195 7 1107 3889 37 4 0 chr9 68507141 68507603 -55568569 + L1Md_F3 LINE L1 5732 6195 -387 7 1107 227 171 0 0 chr9 68507709 68507750 -55568422 + C-rich Low_complexity Low_complexity 1 41 0 8 1107 251 262 0 0 chr9 68507853 68507914 -55568258 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1107 239 0 0 31 chr9 68508470 68508502 -55567670 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1 1107 237 98 0 0 chr9 68508924 68508965 -55567207 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1107 428 174 398 0 chr9 68508965 68509063 -55567109 - PB1D7 SINE Alu 0 149 13 1 1107 967 115 282 0 chr9 68509092 68509266 -55566906 - URR1A DNA MER1_type -3 223 1 1 1107 222 148 0 0 chr9 68509557 68509611 -55566561 + (CAT)n Simple_repeat Simple_repeat 3 56 0 1 1107 405 0 0 0 chr9 68511022 68511067 -55565105 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1107 217 333 67 56 chr9 68512401 68512579 -55563593 - MIR3 SINE MIR -15 193 14 1 1107 29 28 0 0 chr9 68512736 68512772 -55563400 + AT_rich Low_complexity Low_complexity 1 36 0 1 1107 372 270 120 0 chr9 68513037 68513137 -55563035 - Lx8 LINE L1 -143 7330 7219 1 1107 331 114 85 64 chr9 68513135 68513229 -55562943 + Lx9 LINE L1 7548 7643 -1 1 1107 944 194 128 28 chr9 68513246 68513495 -55562677 - Lx8 LINE L1 -240 7233 6960 1 1107 225 0 0 0 chr9 68513815 68513840 -55562332 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 2 1107 249 108 0 0 chr9 68514161 68514198 -55561974 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1107 817 244 70 15 chr9 68514723 68514923 -55561249 - B3 SINE B2 -5 211 1 2 1107 225 342 0 12 chr9 68514941 68515021 -55561151 - MIRm SINE MIR -6 270 192 2 1107 203 305 0 0 chr9 68515137 68515196 -55560976 + CT-rich Low_complexity Low_complexity 4 62 0 2 1107 347 0 23 0 chr9 68516999 68517042 -55559130 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1107 402 21 0 0 chr9 68517107 68517154 -55559018 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1107 906 294 5 9 chr9 68518510 68518726 -55557446 - ID_B1 SINE B4 -4 220 6 2 1107 202 373 0 0 chr9 68518772 68518847 -55557325 - L2b LINE L2 -5 3370 3296 2 1107 549 0 0 0 chr9 68518953 68519014 -55557158 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1107 254 55 100 18 chr9 68519409 68519519 -55556653 + (CAGG)n Simple_repeat Simple_repeat 2 120 0 3 1107 465 215 430 0 chr9 68519995 68520195 -55555977 + B4A SINE B4 1 286 -6 3 1107 258 32 0 0 chr9 68520763 68520794 -55555378 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1107 351 273 29 16 chr9 68520850 68521017 -55555155 - B4A SINE B4 -66 226 2 3 1107 325 284 129 0 chr9 68522235 68522351 -55553821 - B1F SINE Alu -18 131 1 3 1107 693 289 63 19 chr9 68523570 68523653 -55552519 - B4 SINE B4 -8 284 195 3 1107 360 0 0 0 chr9 68523653 68523693 -55552479 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1107 693 289 63 19 chr9 68523693 68523880 -55552292 - B4 SINE B4 -98 194 3 3 1107 288 336 115 14 chr9 68523890 68524029 -55552143 - MLT1A LTR MaLR -218 156 4 3 1107 377 264 99 43 chr9 68525058 68525220 -55550952 - L1ME1 LINE L1 -181 5998 5828 3 1107 625 270 115 0 chr9 68525765 68525965 -55550207 - ID_B1 SINE B4 0 224 2 3 1107 501 47 0 0 chr9 68526598 68526662 -55549510 + (GGA)n Simple_repeat Simple_repeat 1 64 0 4 1107 396 0 0 0 chr9 68526825 68526869 -55549303 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1107 977 25 8 0 chr9 68528375 68528495 -55547677 + (CTGGGG)n Simple_repeat Simple_repeat 5 125 0 4 1107 662 303 0 87 chr9 68528497 68528703 -55547469 + ID_B1 SINE B4 15 202 -22 4 1107 359 33 82 62 chr9 68528734 68528831 -55547341 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 4 1107 259 204 56 0 chr9 68529239 68529293 -55546879 + L2c LINE L2 3331 3387 0 4 1107 382 343 179 14 chr9 68529421 68529699 -55546473 - L1MEd LINE L1 -4774 1451 1067 4 1107 342 0 0 0 chr9 68529699 68529737 -55546435 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1107 382 331 221 18 chr9 68529737 68529870 -55546302 - L1MEd LINE L1 -5053 1066 922 4 1107 272 120 0 20 chr9 68531037 68531088 -55545084 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 4 1107 485 295 73 73 chr9 68531107 68531352 -55544820 - B4 SINE B4 -46 246 2 4 1107 587 146 0 30 chr9 68532052 68532186 -55543986 + GA-rich Low_complexity Low_complexity 2 131 0 5 1107 934 319 11 32 chr9 68532667 68532949 -55543223 + B4 SINE B4 17 292 0 5 1107 252 0 0 0 chr9 68533825 68533853 -55542319 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1107 627 212 222 34 chr9 68533865 68534104 -55542068 - B4A SINE B4 -6 286 3 5 1107 296 268 25 51 chr9 68534160 68534278 -55541894 - MER96B DNA hAT -239 178 64 5 1107 864 29 0 0 chr9 68534986 68535089 -55541083 + (TC)n Simple_repeat Simple_repeat 2 104 0 5 1107 1239 234 92 15 chr9 68536014 68536340 -55539832 - ORR1E LTR MaLR -7 352 2 5 1107 450 36 0 0 chr9 68536961 68537017 -55539155 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1107 288 0 0 0 chr9 68537017 68537048 -55539124 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 1107 304 296 105 17 chr9 68537697 68537869 -55538303 - MIR SINE MIR -73 189 3 5 1107 890 280 89 4 chr9 68538853 68539122 -55537050 + B4A SINE B4 1 292 0 6 1107 446 0 19 0 chr9 68539159 68539213 -55536959 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1107 393 75 0 0 chr9 68539755 68539808 -55536364 + (TCCA)n Simple_repeat Simple_repeat 2 54 0 6 1107 205 108 54 0 chr9 68541015 68541052 -55535120 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1107 423 0 0 0 chr9 68541063 68541110 -55535062 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1107 340 350 138 14 chr9 68541161 68541378 -55534794 - MIRb SINE MIR -8 260 17 6 1107 24 77 0 0 chr9 68541573 68541625 -55534547 + AT_rich Low_complexity Low_complexity 1 52 0 6 1107 213 152 14 70 chr9 68542147 68542172 -55534000 + T-rich Low_complexity Low_complexity 46 68 0 6 1107 649 236 174 0 chr9 68542172 68542350 -55533822 - B3 SINE B2 -3 213 5 6 1107 213 152 14 70 chr9 68542350 68542395 -55533777 + T-rich Low_complexity Low_complexity 2 45 0 6 1107 368 215 50 70 chr9 68544132 68544232 -55531940 - RMER15 LTR ERVL -105 470 373 7 1107 531 0 0 0 chr9 68546000 68546059 -55530113 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 1107 797 313 9 104 chr9 68546105 68546304 -55529868 - B4A SINE B4 0 292 97 7 1107 312 48 0 0 chr9 68546304 68546346 -55529826 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1107 797 313 9 104 chr9 68546346 68546463 -55529709 - B4A SINE B4 -196 96 6 7 1107 264 310 69 25 chr9 68546764 68546966 -55529206 - L1MD3 LINE L1 -115 7880 7670 7 1107 251 287 73 9 chr9 68547294 68547403 -55528769 + MIRc SINE MIR 20 135 -133 7 1107 339 25 0 0 chr9 68548097 68548137 -55528035 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1107 522 301 45 136 chr9 68548248 68548537 -55527635 + B4 SINE B4 1 274 -18 7 1107 306 67 0 0 chr9 68548543 68548588 -55527584 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1107 321 26 0 0 chr9 68548804 68548842 -55527330 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1107 1142 281 107 6 chr9 68549036 68549373 -55526799 + MTEb LTR MaLR 8 378 -1 8 1107 775 240 28 37 chr9 68549899 68550115 -55526057 - ID_B1 SINE B4 -8 216 3 8 138 1358 281 84 36 chr9 68550366 68550864 -55525308 - Charlie1b DNA MER1_type 0 523 2 8 1108 246 81 0 0 chr9 68551246 68551283 -55524889 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 8 1108 522 0 0 0 chr9 68551377 68551435 -55524737 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1108 356 314 56 40 chr9 68551569 68551695 -55524477 - B4A SINE B4 -133 159 32 8 1108 246 220 0 0 chr9 68551698 68551748 -55524424 - B3A SINE B2 -147 51 2 8 1108 1048 290 88 72 chr9 68552507 68553143 -55523029 + RMER13A LTR ERVK 1 646 -214 8 1108 544 277 30 50 chr9 68553300 68553498 -55522674 + B3A SINE B2 4 197 -1 8 1108 184 385 0 0 chr9 68554366 68554431 -55521741 - MIRb SINE MIR -16 252 188 8 1108 623 97 9 0 chr9 68554432 68554546 -55521626 + (GA)n Simple_repeat Simple_repeat 2 116 0 9 1108 723 325 10 0 chr9 68554546 68554743 -55521429 + ID_B1 SINE B4 2 200 -24 9 1108 938 122 0 13 chr9 68554747 68554905 -55521267 + (TAGA)n Simple_repeat Simple_repeat 1 156 0 9 1108 21 0 0 0 chr9 68555329 68555350 -55520822 + AT_rich Low_complexity Low_complexity 1 21 0 9 1108 242 172 83 33 chr9 68555422 68555482 -55520690 + MIRc SINE MIR 82 144 -124 9 1108 219 167 0 0 chr9 68555877 68555913 -55520259 + T-rich Low_complexity Low_complexity 1 36 0 9 1108 1485 73 16 5 chr9 68556339 68556532 -55519640 + B2_Mm2 SINE B2 1 195 0 9 1108 235 239 11 11 chr9 68556841 68556930 -55519242 + CT-rich Low_complexity Low_complexity 3 91 0 9 1108 562 177 16 0 chr9 68557559 68557683 -55518489 + GA-rich Low_complexity Low_complexity 2 127 0 9 1108 271 281 0 15 chr9 68557683 68557748 -55518424 + ID SINE ID 24 87 -137 9 1108 866 255 15 24 chr9 68558132 68558337 -55517835 - ID_B1 SINE B4 -10 214 12 1 1108 605 274 40 45 chr9 68558419 68558618 -55517554 + B3A SINE B2 1 198 0 1 1108 1192 9 41 0 chr9 68559941 68560166 -55516006 + (TG)n Simple_repeat Simple_repeat 1 234 0 1 1108 674 234 97 118 chr9 68560212 68560449 -55515723 - B4 SINE B4 -54 238 7 1 1108 327 49 0 0 chr9 68560819 68560860 -55515312 + (CAG)n Simple_repeat Simple_repeat 1 41 0 1 1108 686 249 38 26 chr9 68561314 68561499 -55514673 + B3A SINE B2 9 191 -7 1 1108 542 242 108 49 chr9 68561742 68561946 -55514226 + MLT1D LTR MaLR 1 216 -289 1 1108 459 202 0 0 chr9 68561994 68562093 -55514079 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1108 217 305 85 0 chr9 68563650 68563732 -55512440 - MIRc SINE MIR -160 108 20 1 1108 194 57 57 0 chr9 68563732 68563767 -55512405 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 1 1108 363 268 223 115 chr9 68564302 68564452 -55511720 + Lx8 LINE L1 7124 7329 -144 1 1108 1009 96 13 0 chr9 68564452 68564608 -55511564 + (GGA)n Simple_repeat Simple_repeat 3 160 0 1 1108 363 268 223 115 chr9 68564608 68564735 -55511437 + Lx8 LINE L1 7330 7431 -42 1 1108 270 0 0 0 chr9 68565514 68565544 -55510628 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1108 185 245 75 0 chr9 68565709 68565762 -55510410 + MIRc SINE MIR 65 121 -147 1 1108 567 292 71 0 chr9 68565836 68565990 -55510182 - B3A SINE B2 -33 165 1 1 1108 218 323 0 21 chr9 68566039 68566134 -55510038 + CT-rich Low_complexity Low_complexity 25 117 0 1 1108 263 215 200 21 chr9 68566493 68566588 -55509584 + MIR SINE MIR 4 115 -147 1 1108 489 138 0 0 chr9 68566590 68566670 -55509502 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 1108 194 0 39 0 chr9 68567420 68567446 -55508726 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1108 292 313 19 48 chr9 68568552 68568680 -55507492 + MIRb SINE MIR 22 163 -105 1 1108 767 274 55 69 chr9 68569836 68570110 -55506062 + B4A SINE B4 1 270 -22 1 1108 207 0 0 0 chr9 68570689 68570712 -55505460 + (CATATA)n Simple_repeat Simple_repeat 4 26 0 1 1108 417 20 0 0 chr9 68570883 68570933 -55505239 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1108 1011 257 100 4 chr9 68570944 68571194 -55504978 - B4A SINE B4 -18 274 1 1 1108 345 24 0 0 chr9 68571412 68571454 -55504718 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1108 257 193 342 18 chr9 68572578 68572689 -55503483 + RSINE1 SINE B4 3 149 -16 1 1108 1115 262 148 3 chr9 68573314 68573639 -55502533 - MTEa LTR MaLR -6 373 2 1 1108 217 236 0 18 chr9 68573974 68574030 -55502142 - MIR SINE MIR -140 122 68 1 1108 180 234 83 21 chr9 68574176 68574224 -55501948 - L2c LINE L2 0 3387 3337 1 1108 697 238 31 31 chr9 68574594 68574785 -55501387 + B4A SINE B4 102 292 0 1 1108 381 43 0 0 chr9 68576027 68576074 -55500098 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1108 454 182 9 9 chr9 68576397 68576508 -55499664 + CT-rich Low_complexity Low_complexity 2 112 0 1 1108 493 336 14 41 chr9 68576521 68576667 -55499505 - ID_B1 SINE B4 -54 170 29 1 1108 524 380 58 36 chr9 68578024 68578300 -55497872 + B4 SINE B4 2 283 -9 1 1108 309 51 0 0 chr9 68578968 68579007 -55497165 + (ACTG)n Simple_repeat Simple_repeat 4 42 0 1 1108 198 333 0 116 chr9 68579468 68579563 -55496609 + L2c LINE L2 3304 3387 0 1 1108 390 57 0 0 chr9 68579617 68579670 -55496502 + (TATG)n Simple_repeat Simple_repeat 1 53 0 1 1108 481 306 65 35 chr9 68579776 68580006 -55496166 - B4A SINE B4 -55 237 1 1 1108 1163 171 18 36 chr9 68580274 68580493 -55495679 + B3 SINE B2 2 216 0 1 1108 1114 257 28 7 chr9 68581569 68581851 -55494321 - B4 SINE B4 -2 290 3 1 1108 239 284 0 78 chr9 68582139 68582242 -55493930 + L4 LINE RTE 1722 1816 -213 1 1108 198 290 0 88 chr9 68582340 68582408 -55493764 + L4 LINE RTE 1968 2029 0 1 1108 357 43 0 0 chr9 68583304 68583351 -55492821 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1108 746 318 26 7 chr9 68583364 68583633 -55492539 - B4A SINE B4 -15 277 4 1 1108 271 217 14 0 chr9 68584095 68584164 -55492008 + CT-rich Low_complexity Low_complexity 2 71 0 1 1108 444 67 0 0 chr9 68584164 68584224 -55491948 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1108 407 52 17 0 chr9 68584231 68584289 -55491883 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1108 299 258 121 61 chr9 68585846 68586011 -55490161 - RLTR21 LTR ERVK -318 1254 1080 1 1108 495 307 17 0 chr9 68586037 68586213 -55489959 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1108 550 264 85 16 chr9 68586297 68586486 -55489686 + B3 SINE B2 2 203 -13 1 1108 275 378 45 18 chr9 68587310 68587531 -55488641 + LTR16A LTR ERVL 82 308 -143 1 1108 367 336 88 25 chr9 68588177 68588497 -55487675 - L1M5 LINE L1 -1362 4784 4445 1 1108 273 238 0 0 chr9 68588692 68588772 -55487400 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 1108 1078 257 33 40 chr9 68588888 68589164 -55487008 - B4 SINE B4 -4 288 15 1 1108 395 38 19 0 chr9 68589187 68589240 -55486932 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1 1108 1110 195 20 0 chr9 68589323 68589523 -55486649 - B3 SINE B2 -8 208 5 1 1108 340 296 68 94 chr9 68589533 68589798 -55486374 - L1M5 LINE L1 -2225 3921 3664 1 1108 279 0 0 0 chr9 68590185 68590216 -55485956 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1108 1231 41 7 0 chr9 68590739 68590885 -55485287 - B1_Mus1 SINE Alu 0 148 2 1 1108 269 0 56 0 chr9 68590986 68591022 -55485150 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1108 618 226 19 7 chr9 68591046 68591232 -55484940 + B3 SINE B2 1 191 -4 1 1108 418 241 208 27 chr9 68592158 68592322 -55483850 - ID_B1 SINE B4 -7 217 20 1 1108 348 252 212 0 chr9 68592703 68592802 -55483370 - B3 SINE B2 -5 211 92 1 1108 253 228 112 56 chr9 68592806 68592913 -55483259 + Lx9 LINE L1 7532 7644 0 1 1108 23 0 0 0 chr9 68592915 68592938 -55483234 + AT_rich Low_complexity Low_complexity 1 23 0 1 1108 1003 186 33 52 chr9 68593168 68593378 -55482794 - B3 SINE B2 -8 208 3 1 1108 1183 130 15 40 chr9 68593593 68593793 -55482379 + B2_Mm2 SINE B2 1 195 0 1 1108 336 24 0 0 chr9 68595166 68595207 -55480965 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1108 519 201 0 0 chr9 68595207 68595366 -55480806 + (TG)n Simple_repeat Simple_repeat 1 159 0 1 1108 24 77 0 0 chr9 68595910 68595962 -55480210 + AT_rich Low_complexity Low_complexity 1 52 0 1 1108 554 211 145 45 chr9 68595962 68596141 -55480031 - B3A SINE B2 0 198 2 1 1108 1211 247 20 67 chr9 68596364 68596754 -55479418 + Lx6 LINE L1 7030 7401 -59 1 1108 311 137 13 52 chr9 68596738 68596815 -55479357 + Lx6 LINE L1 7353 7426 -34 1 1108 504 0 0 0 chr9 68597108 68597164 -55479008 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 1108 1215 54 0 20 chr9 68598395 68598546 -55477626 + B1_Mus1 SINE Alu 1 148 0 1 1108 810 0 0 0 chr9 68598559 68598649 -55477523 + (GAA)n Simple_repeat Simple_repeat 2 91 0 1 1108 22 0 0 0 chr9 68599547 68599569 -55476603 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 183 80 0 0 chr9 68601032 68601057 -55475115 + (TCC)n Simple_repeat Simple_repeat 1 25 0 1 1108 213 132 0 0 chr9 68601081 68601119 -55475053 + (TTC)n Simple_repeat Simple_repeat 1 38 0 1 1108 344 363 82 11 chr9 68601281 68601465 -55474707 - MIRb SINE MIR -21 247 51 1 1108 378 0 0 0 chr9 68602193 68602235 -55473937 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1108 672 93 0 0 chr9 68602235 68602331 -55473841 + (TG)n Simple_repeat Simple_repeat 2 98 0 1 1108 183 129 0 0 chr9 68602527 68602558 -55473614 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1108 937 26 0 0 chr9 68602558 68602673 -55473499 - B1_Mus2 SINE Alu 0 147 33 1 1108 405 0 0 0 chr9 68603247 68603292 -55472880 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1108 216 0 0 0 chr9 68603625 68603649 -55472523 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1108 198 0 0 0 chr9 68603649 68603670 -55472502 + (CG)n Simple_repeat Simple_repeat 2 23 0 1 1108 221 256 0 0 chr9 68603891 68603934 -55472238 + polypyrimidine Low_complexity Low_complexity 1 43 0 1 1108 185 65 32 0 chr9 68604452 68604483 -55471689 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 1 1108 409 211 10 62 chr9 68604506 68604602 -55471570 - ID_B1 SINE B4 -42 182 92 1 1108 207 0 0 0 chr9 68605304 68605327 -55470845 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1108 375 256 188 0 chr9 68605761 68605921 -55470251 + ID_B1 SINE B4 24 213 -11 1 1108 528 16 0 0 chr9 68605974 68606035 -55470137 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1108 267 79 0 0 chr9 68606035 68606072 -55470100 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1108 267 288 0 12 chr9 68606073 68606108 -55470064 + polypyrimidine Low_complexity Low_complexity 46 80 0 1 1108 207 100 0 0 chr9 68606108 68606138 -55470034 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1108 267 288 0 12 chr9 68606138 68606183 -55469989 + polypyrimidine Low_complexity Low_complexity 1 45 0 1 1108 445 296 22 95 chr9 68606309 68606556 -55469616 + L1MA7 LINE L1 6068 6307 -5 1 1108 782 260 33 9 chr9 68606883 68607093 -55469079 + B3 SINE B2 1 215 -1 1 1108 423 312 10 87 chr9 68607219 68607426 -55468746 - B4 SINE B4 -100 192 2 1 1108 5573 79 48 1 chr9 68607445 68608208 -55467964 + L1_Mus3 LINE L1 5840 6638 0 1 1108 520 84 0 24 chr9 68608714 68608799 -55467373 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 1 1108 193 121 0 29 chr9 68609032 68609066 -55467106 - MIR SINE MIR -64 144 112 1 1108 200 288 59 67 chr9 68610091 68610210 -55465962 + MER5B DNA MER1_type 52 169 -9 2 1108 319 244 95 102 chr9 68610282 68610419 -55465753 + MT2B LTR ERVL 129 264 -337 2 1108 693 175 0 0 chr9 68610313 68610436 -55465736 + B1_Mur1 SINE Alu 9 131 -18 2 1108 189 0 0 0 chr9 68611216 68611237 -55464935 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1108 770 291 19 9 chr9 68611240 68611455 -55464717 - ID_B1 SINE B4 -4 220 4 2 1108 184 322 32 11 chr9 68612742 68612836 -55463336 + MIR3 SINE MIR 61 156 -52 2 1108 513 281 75 132 chr9 68612966 68613261 -55462911 + B4A SINE B4 1 278 -14 2 1108 354 61 0 0 chr9 68613301 68613350 -55462822 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1108 768 191 22 0 chr9 68613549 68613685 -55462487 + B3 SINE B2 78 216 0 2 1108 264 184 0 20 chr9 68614229 68614279 -55461893 - ID4_ SINE ID 0 83 35 2 1108 3059 69 18 10 chr9 68614324 68614721 -55461451 - MTB LTR MaLR 0 400 1 2 1108 269 329 0 0 chr9 68614734 68614813 -55461359 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 1108 665 213 49 14 chr9 68615212 68615355 -55460817 + B1_Mus1 SINE Alu 1 148 0 2 1108 663 275 5 90 chr9 68616711 68616923 -55459249 + B3A SINE B2 1 194 -4 2 1108 730 168 27 62 chr9 68618142 68618288 -55457884 + RSINE1 SINE B4 3 143 -22 2 1108 1291 226 75 22 chr9 68618503 68618824 -55457348 + MTEa LTR MaLR 35 372 -7 2 1108 876 205 42 38 chr9 68619782 68619995 -55456177 - ID_B1 SINE B4 -10 214 1 2 1108 315 0 0 0 chr9 68620673 68620708 -55455464 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1108 225 0 0 0 chr9 68621130 68621155 -55455017 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1108 208 231 0 55 chr9 68621160 68621215 -55454957 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1108 870 217 29 19 chr9 68621249 68621456 -55454716 - B3 SINE B2 -7 209 1 2 1108 1553 42 0 31 chr9 68621465 68621659 -55454513 - B2_Mm1a SINE B2 -5 188 1 2 1108 351 227 229 72 chr9 68621684 68621850 -55454322 - B3A SINE B2 0 198 7 2 1108 343 281 6 6 chr9 68621993 68622154 -55454018 + CT-rich Low_complexity Low_complexity 2 162 0 2 1108 246 246 148 0 chr9 68622475 68622536 -55453636 - LTR86A1 LTR ERVL -23 490 421 2 1108 228 336 46 23 chr9 68622625 68622756 -55453416 - LTR86A1 LTR ERVL -230 283 150 2 1108 215 295 60 50 chr9 68622924 68623024 -55453148 + MIR SINE MIR 162 262 0 2 1108 249 190 38 12 chr9 68623129 68623209 -55452963 + CT-rich Low_complexity Low_complexity 1 82 0 2 1108 187 286 77 13 chr9 68623505 68623583 -55452589 - L3 LINE CR1 -3636 853 771 2 1108 188 313 29 15 chr9 68623731 68623799 -55452373 - MIRm SINE MIR -141 135 67 2 1108 252 312 110 0 chr9 68624273 68624382 -55451790 - L2a LINE L2 -1 3425 3305 2 1108 518 289 6 73 chr9 68624756 68624935 -55451237 - MER58A DNA MER1_type -13 211 45 2 1108 232 85 0 60 chr9 68626255 68626305 -55449867 + (TGG)n Simple_repeat Simple_repeat 2 48 0 2 1108 195 100 0 0 chr9 68626489 68626519 -55449653 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1108 27 0 0 0 chr9 68626581 68626608 -55449564 + AT_rich Low_complexity Low_complexity 1 27 0 2 1108 276 170 0 0 chr9 68626988 68627035 -55449137 - B4 SINE B4 -73 219 173 2 1108 191 330 117 56 chr9 68627470 68627666 -55448506 - L2b LINE L2 -237 3138 2931 2 1108 753 312 37 16 chr9 68629475 68629719 -55446453 + B4A SINE B4 1 249 -43 2 1108 555 280 57 21 chr9 68630404 68630597 -55445575 - RMER15 LTR ERVL -13 562 363 2 1108 359 257 146 9 chr9 68630622 68630732 -55445440 - B1F SINE Alu -18 131 7 2 1108 767 204 76 0 chr9 68631152 68631231 -55444941 + ID_B1 SINE B4 2 92 -132 2 1108 311 256 156 0 chr9 68631231 68631321 -55444851 + PB1D10 SINE Alu 1 104 -13 2 1108 672 108 8 15 chr9 68631322 68631454 -55444718 + (CA)n Simple_repeat Simple_repeat 1 131 0 2 1108 180 0 0 0 chr9 68631999 68632019 -55444153 + (TATG)n Simple_repeat Simple_repeat 3 22 0 2 1108 715 220 128 75 chr9 68632034 68632299 -55443873 - B4A SINE B4 0 292 14 2 1108 244 284 50 18 chr9 68632715 68632796 -55443376 - L2a LINE L2 -9 3417 3282 2 1108 627 162 105 11 chr9 68634348 68634479 -55441693 + RLTR20B3 LTR ERVK 404 550 -27 2 1108 191 260 38 84 chr9 68636185 68636286 -55439886 + MIRb SINE MIR 115 207 -55 2 1108 729 284 66 15 chr9 68636867 68637139 -55439033 + B4A SINE B4 4 289 -3 2 1108 711 299 5 5 chr9 68637719 68637904 -55438268 + B3A SINE B2 7 191 -7 2 1108 467 250 238 0 chr9 68639563 68639723 -55436449 + B3A SINE B2 1 198 0 2 1108 882 221 124 12 chr9 68641091 68641348 -55434824 + B4 SINE B4 2 287 -5 2 1108 201 292 0 0 chr9 68641349 68641397 -55434775 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2 1108 288 0 0 0 chr9 68642206 68642238 -55433934 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1108 402 301 41 27 chr9 68642857 68643004 -55433168 - MIRb SINE MIR -119 149 1 2 1108 245 277 71 24 chr9 68643707 68643792 -55432380 + MamRep564 Unknown Unknown 89 177 -180 2 1108 544 309 35 46 chr9 68643977 68644150 -55432022 - MER58A DNA MER1_type -12 212 42 2 1108 240 229 0 0 chr9 68644536 68644584 -55431588 - B4A SINE B4 0 292 245 2 1108 318 210 362 50 chr9 68644624 68644783 -55431389 - B3A SINE B2 -7 209 6 2 1108 209 308 31 0 chr9 68645586 68645651 -55430521 + MER5A DNA MER1_type 1 67 -122 2 1108 751 250 77 0 chr9 68645661 68645857 -55430315 + B3 SINE B2 3 213 -3 2 1108 180 0 0 0 chr9 68646005 68646025 -55430147 + (CCA)n Simple_repeat Simple_repeat 2 21 0 2 1108 1771 73 20 8 chr9 68646044 68646292 -55429880 - RLTR9E LTR ERVK -158 251 1 2 1108 251 155 52 0 chr9 68646682 68646740 -55429432 + G-rich Low_complexity Low_complexity 5 65 0 2 1108 221 224 0 20 chr9 68646829 68646879 -55429293 + (CATA)n Simple_repeat Simple_repeat 4 52 0 2 1108 23 0 0 0 chr9 68647329 68647352 -55428820 + AT_rich Low_complexity Low_complexity 1 23 0 2 1108 554 259 58 117 chr9 68647367 68647555 -55428617 - B3A SINE B2 -18 180 4 2 1108 625 208 40 13 chr9 68647588 68647739 -55428433 - RSINE1 SINE B4 -8 157 3 2 1108 3383 58 42 31 chr9 68649283 68649760 -55426412 - RLTR45 LTR ERVK 0 482 1 2 1108 3736 163 65 0 chr9 68650123 68650743 -55425429 - Lx5 LINE L1 0 7050 6391 2 1108 234 0 0 0 chr9 68650887 68650913 -55425259 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1108 429 70 0 0 chr9 68651521 68651578 -55424594 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1108 234 0 0 0 chr9 68651578 68651604 -55424568 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1108 186 276 65 84 chr9 68652530 68652637 -55423535 - L2b LINE L2 0 3375 3271 2 1108 258 277 0 30 chr9 68652793 68652860 -55423312 + ID4_ SINE ID 16 80 -3 2 1108 1332 78 38 16 chr9 68653043 68653226 -55422946 + B2_Mm2 SINE B2 1 187 -8 2 1108 681 261 27 1 chr9 68653249 68653441 -55422731 - B3A SINE B2 -5 211 12 2 1108 288 0 0 0 chr9 68654463 68654495 -55421677 + (CAG)n Simple_repeat Simple_repeat 1 32 0 2 1108 920 263 38 8 chr9 68654528 68654792 -55421380 + B4 SINE B4 5 276 -16 2 1108 410 49 16 0 chr9 68654808 68654869 -55421303 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1108 347 309 47 58 chr9 68655170 68655342 -55420830 + MIRc SINE MIR 36 205 -63 2 1108 340 271 73 18 chr9 68656048 68656157 -55420015 + PB1D10 SINE Alu 2 116 -1 2 1108 332 309 62 47 chr9 68658029 68658158 -55418014 - B4A SINE B4 -6 286 156 2 1108 23 0 0 0 chr9 68658486 68658509 -55417663 + AT_rich Low_complexity Low_complexity 1 23 0 2 1108 278 342 32 19 chr9 68658854 68659009 -55417163 - Tigger16b DNA Tigger -8 329 173 2 1108 27 0 0 0 chr9 68659012 68659039 -55417133 + AT_rich Low_complexity Low_complexity 1 27 0 2 1108 331 211 56 0 chr9 68659063 68659134 -55417038 - B3A SINE B2 -122 76 2 2 1108 194 0 0 37 chr9 68659142 68659169 -55417003 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1108 242 352 0 9 chr9 68659283 68659389 -55416783 + PB1D10 SINE Alu 4 108 -9 2 1108 695 268 110 8 chr9 68660139 68660402 -55415770 + B4A SINE B4 3 292 0 2 1108 1323 60 4 0 chr9 68660770 68661037 -55415135 + (TC)n Simple_repeat Simple_repeat 1 267 0 2 1108 288 0 0 0 chr9 68661561 68661593 -55414579 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1108 290 26 26 0 chr9 68662322 68662361 -55413811 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1108 898 102 27 0 chr9 68662362 68662509 -55413663 + (GGGA)n Simple_repeat Simple_repeat 3 153 0 2 1108 819 241 0 6 chr9 68663513 68663684 -55412488 - Lx8 LINE L1 -735 6738 6569 2 1108 1564 57 0 0 chr9 68664616 68664809 -55411363 + L1_Mus1 LINE L1 6375 6567 0 2 1108 409 261 188 11 chr9 68665106 68665292 -55410880 + ID_B1 SINE B4 1 219 -5 2 1108 282 56 0 0 chr9 68665966 68666002 -55410170 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1108 809 302 77 8 chr9 68666019 68666266 -55409906 - B4 SINE B4 -25 267 4 2 1108 530 285 115 73 chr9 68666915 68667176 -55408996 + B4 SINE B4 10 281 -11 2 1108 3379 35 5 0 chr9 68667276 68667670 -55408502 + MTA_Mm LTR MaLR 1 396 0 2 1108 230 286 63 0 chr9 68667672 68667735 -55408437 - L2c LINE L2 -16 3371 3305 3 1108 185 243 0 14 chr9 68669426 68669497 -55406675 + CT-rich Low_complexity Low_complexity 4 73 0 3 1108 447 263 48 56 chr9 68669736 68669861 -55406311 + RSINE1 SINE B4 4 127 -38 3 1108 314 283 24 96 chr9 68669840 68669965 -55406207 - ID_B1 SINE B4 -33 191 76 3 1108 429 20 0 0 chr9 68670218 68670268 -55405904 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1108 193 286 32 0 chr9 68670905 68670968 -55405204 + L4 LINE RTE 696 760 -1269 3 1108 378 0 0 0 chr9 68671127 68671169 -55405003 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1108 246 222 0 0 chr9 68671170 68671224 -55404948 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1108 446 287 30 37 chr9 68671642 68671776 -55404396 + B4A SINE B4 3 135 -157 3 1108 1662 139 147 6 chr9 68671780 68672092 -55404080 - ORR1B2 LTR MaLR -8 359 4 3 1108 634 268 14 0 chr9 68672103 68672245 -55403927 + B4A SINE B4 139 282 -10 3 1108 833 289 65 18 chr9 68672361 68672639 -55403533 + B4 SINE B4 2 292 0 3 1108 358 214 14 0 chr9 68672642 68672782 -55403390 + (CA)n Simple_repeat Simple_repeat 2 143 0 3 1108 306 0 0 0 chr9 68673328 68673362 -55402810 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1108 1027 311 3 39 chr9 68673401 68673685 -55402487 - B4A SINE B4 -9 283 10 3 1108 262 260 136 0 chr9 68674184 68674264 -55401908 - PB1 SINE Alu -40 109 25 3 1108 795 311 9 9 chr9 68675800 68676030 -55400142 + B4A SINE B4 2 231 -61 3 1108 343 297 14 0 chr9 68676014 68676088 -55400084 + B1_Mur2 SINE Alu 35 109 -40 3 1108 195 42 0 0 chr9 68676103 68676127 -55400045 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 3 1108 369 262 80 79 chr9 68676504 68676747 -55399425 + B4A SINE B4 2 270 -22 3 1108 324 0 0 0 chr9 68676753 68676789 -55399383 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1108 321 140 0 0 chr9 68676912 68676969 -55399203 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 3 1108 501 235 166 44 chr9 68677268 68677506 -55398666 + B4 SINE B4 26 292 0 3 1108 252 266 0 30 chr9 68677530 68677596 -55398576 + GA-rich Low_complexity Low_complexity 1 64 0 3 1108 6285 30 13 8 chr9 68678274 68679025 -55397147 - L1Md_F3 LINE L1 0 6584 5830 3 1108 838 272 81 83 chr9 68679222 68679585 -55396587 - MT2A LTR ERVL -4 529 179 3 1108 189 0 0 0 chr9 68679585 68679606 -55396566 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 3 1108 838 272 81 83 chr9 68679606 68679772 -55396400 - MT2A LTR ERVL -355 178 1 3 1108 2657 232 28 69 chr9 68680227 68680380 -55395792 - RCHARR1 DNA MER1_type -1 973 830 3 1108 1038 225 5 9 chr9 68680380 68680600 -55395572 + ID_B1 SINE B4 3 221 -3 3 1108 2657 234 26 69 chr9 68680600 68681373 -55394799 - RCHARR1 DNA MER1_type -145 829 5 3 138 994 247 154 6 chr9 68681505 68681835 -55394337 - MTE2b LTR MaLR 0 379 1 3 1109 258 284 0 0 chr9 68681950 68682017 -55394155 - tRNA-Ala-GCY_ tRNA tRNA -4 71 5 3 1109 337 270 10 0 chr9 68682356 68682456 -55393716 - MER103 DNA DNA -63 103 3 3 1109 1028 313 0 22 chr9 68683209 68683480 -55392692 + B4 SINE B4 1 265 -27 3 1109 426 39 0 0 chr9 68683496 68683548 -55392624 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1109 208 309 29 0 chr9 68683553 68683621 -55392551 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 3 1109 748 281 95 0 chr9 68684688 68684909 -55391263 + B4A SINE B4 39 280 -12 3 1109 486 0 0 0 chr9 68684910 68684964 -55391208 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1109 581 307 53 102 chr9 68685336 68685561 -55390611 + B4A SINE B4 3 216 -76 3 1109 310 329 63 25 chr9 68687171 68687330 -55388842 - MER5A1 DNA MER1_type 0 166 2 3 1109 612 302 136 8 chr9 68687432 68687682 -55388490 + B4A SINE B4 3 284 -8 3 1109 214 189 0 0 chr9 68687716 68687753 -55388419 + (CATA)n Simple_repeat Simple_repeat 4 40 0 3 1109 30 0 0 0 chr9 68687797 68687827 -55388345 + AT_rich Low_complexity Low_complexity 1 30 0 3 1109 187 306 108 76 chr9 68688997 68689182 -55386990 + MIRb SINE MIR 34 223 -45 3 1109 201 121 0 0 chr9 68689252 68689285 -55386887 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 3 1109 550 241 17 58 chr9 68689298 68689470 -55386702 + HAL1-2a_MD LINE L1 2341 2505 -519 3 1109 213 271 0 0 chr9 68689476 68689524 -55386648 + (CCA)n Simple_repeat Simple_repeat 2 49 0 3 1109 1353 277 19 25 chr9 68689577 68689944 -55386228 + MTE2b LTR MaLR 2 366 -13 3 1109 390 42 0 0 chr9 68690472 68690520 -55385652 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1109 415 308 145 17 chr9 68690900 68691072 -55385100 - B4 SINE B4 -25 267 74 3 1109 257 0 30 0 chr9 68691135 68691168 -55385004 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 3 1109 1173 61 0 20 chr9 68691171 68691321 -55384851 - B1_Mm SINE Alu 0 147 1 3 1109 224 224 121 0 chr9 68691637 68691695 -55384477 - L3b LINE CR1 -102 380 316 3 1109 212 354 0 0 chr9 68691702 68691781 -55384391 - L2a LINE L2 -1 3425 3347 3 1109 225 311 19 19 chr9 68692636 68692741 -55383431 + PB1D10 SINE Alu 5 109 -8 3 1109 399 21 0 0 chr9 68692811 68692859 -55383313 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1109 882 290 18 18 chr9 68693990 68694208 -55381964 - B4 SINE B4 0 292 75 3 1109 25 0 0 0 chr9 68694234 68694259 -55381913 + AT_rich Low_complexity Low_complexity 1 25 0 3 1109 1252 213 163 29 chr9 68694288 68694421 -55381751 - MTD LTR MaLR -30 389 224 3 1109 396 0 0 0 chr9 68694421 68694465 -55381707 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1109 252 0 0 0 chr9 68694465 68694492 -55381680 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1109 1252 213 163 29 chr9 68694492 68694700 -55381472 - MTD LTR MaLR -196 223 2 3 1109 325 222 83 0 chr9 68694704 68694776 -55381396 - B4 SINE B4 -212 80 3 3 1109 225 312 106 102 chr9 68695115 68695408 -55380764 + L2a LINE L2 3094 3426 0 3 1109 260 321 12 0 chr9 68695873 68695957 -55380215 - MIR SINE MIR -128 134 50 3 1109 510 114 0 0 chr9 68696033 68696112 -55380060 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1109 698 120 9 0 chr9 68696119 68696227 -55379945 + URR1B DNA MER1_type 117 225 0 3 1109 370 283 183 11 chr9 68696227 68696301 -55379871 - CYRA11_Mm Unknown Y-chromosome -332 281 68 3 1109 724 254 17 6 chr9 68696324 68696502 -55379670 - B3A SINE B2 -18 180 1 3 1109 1437 53 26 26 chr9 68696546 68696578 -55379594 - B2_Mm1t SINE B2 0 193 161 3 1109 207 0 0 0 chr9 68696578 68696601 -55379571 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 1109 1437 53 26 26 chr9 68696601 68696761 -55379411 - B2_Mm1t SINE B2 -33 160 1 3 1109 643 281 7 7 chr9 68699252 68699399 -55376773 + B3A SINE B2 1 147 -51 3 1109 396 0 0 0 chr9 68699434 68699478 -55376694 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1109 210 37 0 0 chr9 68699592 68699619 -55376553 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 3 1109 281 287 53 13 chr9 68699631 68699734 -55376438 - B1F SINE Alu -1 116 5 3 1109 465 277 54 73 chr9 68699882 68700143 -55376029 - MER33 DNA MER1_type -14 310 55 3 1109 1148 191 51 5 chr9 68700266 68700482 -55375690 - URR1A DNA MER1_type 0 226 1 3 1109 240 288 111 46 chr9 68700666 68700819 -55375353 + MIR SINE MIR 34 196 -66 3 1109 540 45 0 0 chr9 68701168 68701235 -55374937 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1109 1134 272 32 18 chr9 68701719 68701996 -55374176 + B4 SINE B4 11 291 -1 3 1109 296 240 19 0 chr9 68702018 68702122 -55374050 + (CATA)n Simple_repeat Simple_repeat 4 109 0 3 1109 364 221 22 55 chr9 68702382 68702564 -55373608 + (TATG)n Simple_repeat Simple_repeat 3 178 0 3 1109 452 320 38 82 chr9 68702567 68702891 -55373281 - B4A SINE B4 -15 277 2 3 1109 194 192 19 0 chr9 68703450 68703502 -55372670 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1109 1060 139 209 0 chr9 68703923 68704110 -55372062 + URR1A DNA MER1_type 1 226 0 3 1109 648 251 144 20 chr9 68704153 68704265 -55371907 - B4 SINE B4 -73 219 81 3 1109 212 0 36 0 chr9 68704265 68704293 -55371879 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 3 1109 648 251 144 20 chr9 68704293 68704375 -55371797 - B4 SINE B4 -212 80 1 3 1109 291 310 74 32 chr9 68704680 68704870 -55371302 - L1MB8 LINE L1 0 6178 5981 3 1109 310 283 43 0 chr9 68704899 68704991 -55371181 - L1MB5 LINE L1 -171 6003 5908 3 1109 333 276 70 20 chr9 68705300 68705400 -55370772 + L2b LINE L2 3271 3375 0 3 1109 277 22 0 62 chr9 68706130 68706178 -55369994 + (CAAAC)n Simple_repeat Simple_repeat 2 46 0 3 1109 234 62 0 0 chr9 68707056 68707088 -55369084 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 3 1109 601 235 8 14 chr9 68707100 68707238 -55368934 - B3A SINE B2 -28 188 57 3 1109 258 32 0 0 chr9 68708897 68708928 -55367244 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1109 235 381 88 7 chr9 68709687 68709835 -55366337 - MIR SINE MIR -50 212 53 3 1109 534 313 69 69 chr9 68710175 68710422 -55365750 - B4A SINE B4 -45 247 1 3 1109 202 276 0 33 chr9 68711840 68711900 -55364272 + (TATG)n Simple_repeat Simple_repeat 1 58 0 3 1109 630 294 149 16 chr9 68711917 68712166 -55364006 - B4A SINE B4 -9 283 2 3 1109 728 224 0 7 chr9 68713053 68713188 -55362984 + ID_B1 SINE B4 84 217 -7 3 1109 1195 256 71 23 chr9 68713205 68713557 -55362615 + ORR1D2 LTR MaLR 2 370 0 3 1109 189 355 70 39 chr9 68715783 68715912 -55360260 - MIR3 SINE MIR -65 143 11 3 1109 700 301 50 15 chr9 68717852 68718051 -55358121 - MER58A DNA MER1_type 0 224 19 3 1109 184 248 227 9 chr9 68718200 68718310 -55357862 - MIR3 SINE MIR -71 137 4 3 1109 262 232 0 18 chr9 68718575 68718632 -55357540 + GA-rich Low_complexity Low_complexity 2 57 0 3 1109 304 315 78 133 chr9 68719497 68719768 -55356404 - ORR1E LTR MaLR -2 357 102 4 1109 941 163 6 0 chr9 68720213 68720391 -55355781 + CT-rich Low_complexity Low_complexity 2 180 0 4 1109 809 226 22 37 chr9 68720615 68720809 -55355363 + B3A SINE B2 3 194 -4 4 1109 1049 206 201 55 chr9 68720949 68721258 -55354914 + ORR1D1 LTR MaLR 20 373 -1 4 1109 1130 271 96 60 chr9 68721645 68722029 -55354143 - MTD LTR MaLR 0 419 22 4 1109 558 0 0 0 chr9 68722030 68722092 -55354080 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1109 324 0 0 0 chr9 68723545 68723581 -55352591 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1109 219 350 68 0 chr9 68723845 68723948 -55352224 - MIRc SINE MIR -41 227 118 4 1109 508 327 115 37 chr9 68724532 68724942 -55351230 - Charlie2a DNA MER1_type -514 2347 1906 4 1109 230 97 0 0 chr9 68725932 68725963 -55350209 + B3A SINE B2 9 39 -159 4 1109 1896 189 114 30 chr9 68725976 68726439 -55349733 + Lx2B LINE L1 6486 6987 -13 4 1109 872 241 5 5 chr9 68726448 68726636 -55349536 + B3 SINE B2 27 214 -2 4 1109 653 259 123 51 chr9 68726663 68726996 -55349176 - Charlie2a DNA MER1_type -1015 1846 1490 4 1109 441 0 0 0 chr9 68727090 68727139 -55349033 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1109 390 42 0 0 chr9 68727682 68727730 -55348442 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1109 212 152 133 17 chr9 68727739 68727799 -55348373 + MIRb SINE MIR 173 239 -29 4 1109 243 0 0 0 chr9 68727989 68728016 -55348156 + (CCCCCA)n Simple_repeat Simple_repeat 6 32 0 4 1109 371 277 69 46 chr9 68728683 68728857 -55347315 - L1M5 LINE L1 -552 5572 5395 4 1109 267 214 60 0 chr9 68729338 68729422 -55346750 + (TCTCTG)n Simple_repeat Simple_repeat 3 91 0 4 1109 209 54 81 0 chr9 68729674 68729711 -55346461 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 4 1109 243 0 0 0 chr9 68730004 68730031 -55346141 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1109 441 0 0 0 chr9 68733801 68733850 -55342322 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1109 708 83 0 0 chr9 68734366 68734475 -55341697 + (CA)n Simple_repeat Simple_repeat 2 110 0 4 1109 639 282 40 30 chr9 68734579 68734780 -55341392 - B3 SINE B2 0 216 14 4 1109 690 370 36 8 chr9 68734771 68735019 -55341153 + B4 SINE B4 16 270 -22 4 1109 851 260 53 41 chr9 68735239 68735484 -55340688 + B4 SINE B4 45 292 0 4 1109 290 247 0 79 chr9 68735764 68735865 -55340307 - L1ME1 LINE L1 -10 6169 6077 4 1109 432 0 0 0 chr9 68736555 68736603 -55339569 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1109 405 268 21 0 chr9 68737584 68737681 -55338491 - MTE2b LTR MaLR -274 105 7 4 1109 310 227 0 69 chr9 68738038 68738133 -55338039 + B1F2 SINE Alu 10 89 -60 4 1109 219 114 0 0 chr9 68738341 68738376 -55337796 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1109 439 345 25 15 chr9 68738528 68738728 -55337444 - B4A SINE B4 -2 290 89 4 1109 28 0 0 0 chr9 68738789 68738817 -55337355 + AT_rich Low_complexity Low_complexity 1 28 0 4 1109 1239 48 0 0 chr9 68738817 68738964 -55337208 - B1_Mm SINE Alu 0 147 1 4 1109 837 212 50 85 chr9 68738985 68739186 -55336986 - B3A SINE B2 -1 197 4 4 1109 778 240 25 15 chr9 68740239 68740443 -55335729 - B3A SINE B2 -12 204 1 4 1109 343 265 265 24 chr9 68740857 68741027 -55335145 + ID_B1 SINE B4 8 218 -6 4 1109 223 140 40 0 chr9 68741038 68741088 -55335084 + GA-rich Low_complexity Low_complexity 3 54 0 4 1109 216 320 38 25 chr9 68742536 68742616 -55333556 + MIR SINE MIR 49 129 -79 4 1109 247 301 52 17 chr9 68742797 68742912 -55333260 + L1MB7 LINE L1 5805 5923 -261 4 1109 805 271 0 12 chr9 68743125 68743297 -55332875 - B4 SINE B4 -42 250 81 4 1109 1496 248 40 40 chr9 68744312 68744632 -55331540 + MTEb LTR MaLR 6 314 -65 4 1109 591 15 0 0 chr9 68744632 68744700 -55331472 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 4 1109 1496 248 40 40 chr9 68744700 68744753 -55331419 + MTEb LTR MaLR 315 377 -2 4 1109 549 0 0 0 chr9 68745637 68745698 -55330474 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1109 702 84 0 0 chr9 68745698 68745804 -55330368 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 1109 483 313 78 66 chr9 68745827 68746070 -55330102 - B4A SINE B4 -46 246 1 4 1109 261 0 0 0 chr9 68746877 68746906 -55329266 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1109 672 250 69 20 chr9 68747424 68747628 -55328544 - B3A SINE B2 0 216 3 4 1109 27 29 0 0 chr9 68747927 68747961 -55328211 + AT_rich Low_complexity Low_complexity 1 34 0 4 1109 216 0 0 0 chr9 68747975 68747999 -55328173 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1109 228 333 90 106 chr9 68748223 68748468 -55327704 - MER5C DNA MER1_type -72 241 1 4 1109 447 19 0 0 chr9 68748608 68748660 -55327512 + (ATG)n Simple_repeat Simple_repeat 1 52 0 4 1109 368 298 61 66 chr9 68749178 68749390 -55326782 + L1M4c LINE L1 42 252 -6290 4 1109 317 319 61 61 chr9 68749613 68749810 -55326362 + L1M4c LINE L1 563 759 -5783 4 1109 403 308 117 54 chr9 68749812 68750128 -55326044 + L1M4c LINE L1 1646 1981 -4665 4 1109 341 287 62 93 chr9 68750127 68750450 -55325722 + L1M4c LINE L1 3523 3835 -2809 4 1109 21 36 0 0 chr9 68750450 68750478 -55325694 + AT_rich Low_complexity Low_complexity 1 28 0 4 1109 2186 104 9 60 chr9 68750608 68750944 -55325228 - ORR1A2 LTR MaLR -8 319 1 4 1109 258 296 0 0 chr9 68750946 68751000 -55325172 + PB1D10 SINE Alu 32 85 -32 4 1109 253 316 0 0 chr9 68751091 68751148 -55325024 + ID4_ SINE ID 26 82 -1 4 1109 583 303 58 28 chr9 68751237 68751599 -55324573 + L1M4c LINE L1 4318 4689 -1955 4 1109 183 100 0 0 chr9 68751606 68751636 -55324536 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1109 613 252 81 0 chr9 68751911 68752109 -55324063 + ID_B1 SINE B4 1 214 -10 4 1109 186 175 30 45 chr9 68752124 68752190 -55323982 + GA-rich Low_complexity Low_complexity 3 67 0 4 1109 237 295 25 25 chr9 68753131 68753211 -55322961 + B2_Mm2 SINE B2 1 80 -115 4 1109 364 238 25 12 chr9 68753144 68753225 -55322947 + ID_B1 SINE B4 14 95 -129 4 1109 236 244 0 0 chr9 68753232 68753277 -55322895 + polypurine Low_complexity Low_complexity 4 48 0 4 1109 441 248 38 9 chr9 68753468 68753574 -55322598 + ID_B1 SINE B4 110 218 -6 4 1109 369 0 0 0 chr9 68754649 68754690 -55321482 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1109 490 234 188 6 chr9 68754748 68754929 -55321243 + B4 SINE B4 3 216 -76 4 1109 385 306 32 0 chr9 68755576 68755700 -55320472 - MIRb SINE MIR -87 181 52 4 1109 543 53 0 0 chr9 68755757 68755832 -55320340 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 1109 319 344 45 38 chr9 68755961 68756118 -55320054 - Charlie15a DNA MER1_type 0 224 67 4 1109 373 125 0 158 chr9 68756481 68756532 -55319640 + B1_Mur4 SINE Alu 17 59 -91 4 1109 2236 152 128 12 chr9 68756532 68756862 -55319310 + RMER4A LTR ERVK 4 345 -121 4 1109 740 83 9 0 chr9 68756862 68756971 -55319201 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 1109 2236 152 128 12 chr9 68756971 68757053 -55319119 + RMER4A LTR ERVK 346 463 -3 4 1109 373 125 0 158 chr9 68757053 68757077 -55319095 + B1_Mur4 SINE Alu 60 80 -70 4 1109 390 152 0 0 chr9 68757095 68757187 -55318985 + CT-rich Low_complexity Low_complexity 2 93 0 4 1109 252 0 0 0 chr9 68757187 68757215 -55318957 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1109 242 321 18 36 chr9 68757581 68757691 -55318481 + MER5B DNA MER1_type 71 178 0 4 1109 756 250 9 26 chr9 68758556 68758744 -55317428 + B3A SINE B2 1 176 -19 4 1109 23 0 0 71 chr9 68758977 68759019 -55317153 + AT_rich Low_complexity Low_complexity 1 39 0 4 1109 212 333 0 28 chr9 68759061 68759169 -55317003 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 4 1109 218 300 0 0 chr9 68759076 68759136 -55317036 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1109 582 315 72 137 chr9 68759967 68760106 -55316066 + MLT1B LTR MaLR 1 95 -295 4 1109 549 303 87 29 chr9 68760106 68760381 -55315791 - B4A SINE B4 0 292 2 4 1109 582 315 72 137 chr9 68760381 68760657 -55315515 + MLT1B LTR MaLR 96 389 -1 4 1109 208 167 23 23 chr9 68760819 68760862 -55315310 + GA-rich Low_complexity Low_complexity 4 46 0 4 1109 261 0 0 0 chr9 68761554 68761583 -55314589 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1109 309 246 46 0 chr9 68761669 68761734 -55314438 - ID4 SINE ID -13 70 3 4 1109 306 257 104 9 chr9 68761746 68761852 -55314320 - PB1D10 SINE Alu -1 116 1 4 1109 183 366 30 22 chr9 68762198 68762332 -55313840 + MIRb SINE MIR 23 157 -111 4 1109 291 54 0 0 chr9 68762752 68762789 -55313383 + (GGA)n Simple_repeat Simple_repeat 1 37 0 4 1109 660 249 109 0 chr9 68763062 68763255 -55312917 - ID_B1 SINE B4 -9 215 2 4 1109 207 342 81 14 chr9 68763417 68763491 -55312681 + MIRc SINE MIR 74 152 -116 4 1109 317 310 58 0 chr9 68765057 68765144 -55311028 - B1F1 SINE Alu -57 92 1 4 1109 288 330 68 0 chr9 68765144 68765170 -55311002 - B4A SINE B4 -207 85 54 4 1109 458 266 34 34 chr9 68765544 68765692 -55310480 + MIR SINE MIR 29 176 -86 4 1109 1494 213 93 15 chr9 68765937 68766271 -55309901 - ORR1D1 LTR MaLR -14 360 1 4 1109 22 0 0 0 chr9 68766277 68766299 -55309873 + AT_rich Low_complexity Low_complexity 1 22 0 4 1109 465 66 0 0 chr9 68766411 68766472 -55309700 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 4 1109 510 176 5 69 chr9 68766524 68766664 -55309508 - B1_Mur1 SINE Alu -4 145 20 4 1109 225 0 0 0 chr9 68766940 68766965 -55309207 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1109 1302 20 0 0 chr9 68766965 68767111 -55309061 - B1_Mm SINE Alu 0 147 2 4 1109 33 0 0 0 chr9 68767916 68767949 -55308223 + AT_rich Low_complexity Low_complexity 1 33 0 4 1109 826 259 29 70 chr9 68768180 68768421 -55307751 + B4 SINE B4 2 232 -60 4 1109 700 259 62 0 chr9 68768462 68768655 -55307517 + B3 SINE B2 1 205 -11 4 1109 243 312 12 40 chr9 68769207 68769327 -55306845 + MIR SINE MIR 86 205 -63 4 1109 601 298 90 24 chr9 68769883 68770217 -55305955 + ORR1E LTR MaLR 1 356 -3 5 1109 2294 160 18 0 chr9 68770217 68770602 -55305570 - ORR1B1 LTR MaLR 0 394 1 5 1109 204 319 42 0 chr9 68770817 68770889 -55305283 + MIRm SINE MIR 193 267 -9 5 1109 372 365 49 12 chr9 68771459 68771649 -55304523 - MIRc SINE MIR -74 194 1 5 1109 180 0 0 0 chr9 68771753 68771773 -55304399 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1109 703 253 18 31 chr9 68771803 68771966 -55304206 - B3A SINE B2 -36 162 2 5 1109 299 350 74 46 chr9 68771972 68772218 -55303954 - MIRb SINE MIR -10 258 3 5 1109 393 283 121 42 chr9 68772285 68772451 -55303721 + MIRc SINE MIR 90 268 0 5 1109 426 20 0 0 chr9 68772916 68772967 -55303205 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1109 6062 53 9 3 chr9 68773008 68773760 -55302412 + L1Md_F2 LINE L1 5821 6577 -5 5 1109 1042 236 38 55 chr9 68773816 68774107 -55302065 - B4 SINE B4 -3 289 4 5 1109 522 248 0 8 chr9 68774112 68774230 -55301942 - PB1D10 SINE Alu 0 117 1 5 1109 237 159 0 0 chr9 68774754 68774798 -55301374 + (ATG)n Simple_repeat Simple_repeat 3 46 0 5 1109 337 253 16 6 chr9 68774798 68774892 -55301280 + PB1D7 SINE Alu 10 103 -17 5 1109 1244 277 45 35 chr9 68774892 68775266 -55300906 - MTE2b LTR MaLR -1 378 1 5 1109 240 65 0 0 chr9 68775693 68775724 -55300448 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1109 363 172 6 44 chr9 68775724 68775906 -55300266 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 5 1109 432 0 0 0 chr9 68775965 68776013 -55300159 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1109 318 291 0 14 chr9 68776722 68776848 -55299324 + L1_Mm LINE L1 5460 5577 -2418 5 1109 752 256 5 40 chr9 68776993 68777192 -55298980 + B3A SINE B2 1 192 -6 5 1109 27 0 0 0 chr9 68777193 68777220 -55298952 + AT_rich Low_complexity Low_complexity 1 27 0 5 1109 428 238 351 8 chr9 68777356 68777487 -55298685 - B3A SINE B2 -18 180 5 5 1109 1178 67 6 0 chr9 68777993 68778158 -55298014 + (TG)n Simple_repeat Simple_repeat 1 166 0 5 1109 543 288 87 83 chr9 68778171 68778459 -55297713 - B4A SINE B4 -2 290 2 5 1109 728 238 0 35 chr9 68780069 68780239 -55295933 - RSINE1 SINE B4 0 165 2 5 1109 1135 158 114 0 chr9 68780289 68780491 -55295681 - URR1A DNA MER1_type -1 225 1 5 1109 711 254 26 87 chr9 68781178 68781407 -55294765 - B4 SINE B4 -77 215 1 5 1109 1047 307 18 55 chr9 68781850 68782305 -55293867 - L1ME1 LINE L1 -15 6164 5727 5 1109 22 0 0 0 chr9 68782356 68782378 -55293794 + AT_rich Low_complexity Low_complexity 1 22 0 5 1109 216 0 0 0 chr9 68782378 68782402 -55293770 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1109 243 0 0 0 chr9 68782402 68782428 -55293744 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1109 345 24 0 0 chr9 68782432 68782474 -55293698 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1109 414 287 0 27 chr9 68782478 68782589 -55293583 - B3A SINE B2 -80 118 11 5 1109 408 40 0 0 chr9 68782628 68782678 -55293494 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1109 502 239 25 25 chr9 68782713 68782833 -55293339 - B4 SINE B4 -14 278 159 5 1109 1368 196 107 6 chr9 68782836 68783164 -55293008 + ORR1D1 LTR MaLR 10 370 -4 5 1109 261 319 0 53 chr9 68783170 68783246 -55292926 - B4A SINE B4 -138 154 83 5 1109 818 271 33 25 chr9 68784385 68784661 -55291511 + B4A SINE B4 5 282 -10 5 1109 333 279 77 52 chr9 68785152 68785360 -55290812 - MER106B DNA MER1_type -16 1043 907 5 1109 2428 149 5 18 chr9 68785352 68785735 -55290437 + MTC LTR MaLR 44 421 0 5 1109 272 284 38 38 chr9 68785762 68785868 -55290304 - MTE2b LTR MaLR -7 372 267 5 1109 867 199 119 6 chr9 68785904 68786081 -55290091 - MTE2b LTR MaLR -182 197 1 5 1109 184 302 163 0 chr9 68786900 68786986 -55289186 + MIRb SINE MIR 1 100 -168 5 1109 1018 302 111 12 chr9 68787467 68787799 -55288373 - ORR1D2 LTR MaLR 0 370 6 5 1109 521 231 25 8 chr9 68789298 68789420 -55286752 + MIR SINE MIR 125 248 -14 5 1109 230 226 34 123 chr9 68789519 68789555 -55286617 - RLTR13B1 LTR ERVK -511 382 350 5 1109 243 88 0 0 chr9 68789555 68789589 -55286583 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1109 230 226 34 123 chr9 68789589 68789698 -55286474 - RLTR13B1 LTR ERVK -544 349 250 5 1109 741 279 64 23 chr9 68789597 68789817 -55286355 - B4 SINE B4 -17 275 47 5 1109 1040 135 0 0 chr9 68789868 68790016 -55286156 - B1_Mus1 SINE Alu 0 148 1 5 1109 271 184 0 0 chr9 68790018 68790067 -55286105 - B4 SINE B4 -239 53 5 5 1109 418 319 84 0 chr9 68790128 68790294 -55285878 + MER5A DNA MER1_type 4 183 -6 5 1109 233 209 0 0 chr9 68790807 68790850 -55285322 - AmnSINE1 SINE SINE -91 484 442 5 1109 418 289 154 5 chr9 68791638 68791833 -55284339 + ID_B1 SINE B4 1 224 0 5 1109 250 283 127 81 chr9 68792018 68792191 -55283981 - AmnSINE1 SINE SINE -394 181 1 5 1109 21 0 0 0 chr9 68793572 68793593 -55282579 + AT_rich Low_complexity Low_complexity 1 21 0 5 1109 814 276 55 18 chr9 68794645 68794918 -55281254 - B4A SINE B4 -5 287 5 5 1109 393 143 14 14 chr9 68794918 68794982 -55281190 - MER3 DNA MER1_type -79 130 66 5 1109 265 336 70 45 chr9 68796129 68796285 -55279887 + MIR3 SINE MIR 39 198 -10 5 1109 943 241 88 29 chr9 68796332 68796606 -55279566 - B4 SINE B4 0 292 3 5 1109 261 0 0 0 chr9 68797080 68797109 -55279063 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1109 1239 42 0 0 chr9 68797110 68797253 -55278919 + B1_Mm SINE Alu 1 143 -4 5 1109 225 0 0 0 chr9 68797254 68797279 -55278893 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 5 1109 591 264 0 9 chr9 68797408 68797519 -55278653 + B3A SINE B2 4 113 -85 5 1109 216 0 0 0 chr9 68797534 68797558 -55278614 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1109 256 176 20 0 chr9 68798793 68798844 -55277328 + PB1D10 SINE Alu 59 110 -7 5 1109 294 333 26 95 chr9 68798854 68798900 -55277272 - B2_Mm1a SINE B2 -15 178 129 5 1109 462 49 0 0 chr9 68798900 68798961 -55277211 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1109 590 291 4 21 chr9 68798961 68799103 -55277069 - B3A SINE B2 -65 128 3 5 1109 760 310 27 63 chr9 68800329 68800593 -55275579 + B4A SINE B4 3 265 -27 5 1109 465 34 0 0 chr9 68800593 68800652 -55275520 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1109 760 310 27 63 chr9 68800652 68800687 -55275485 + B4A SINE B4 266 291 -1 5 1109 617 219 0 24 chr9 68800973 68801099 -55275073 + ID_B1 SINE B4 102 224 0 5 1109 608 270 52 56 chr9 68801253 68801559 -55274613 - L1MC1 LINE L1 -80 6253 5949 5 1109 988 80 27 0 chr9 68802193 68802343 -55273829 + (TCCC)n Simple_repeat Simple_repeat 4 157 0 5 1109 218 336 46 62 chr9 68802470 68802600 -55273572 + MIRm SINE MIR 56 183 -93 5 1109 30 27 0 0 chr9 68803143 68803180 -55272992 + AT_rich Low_complexity Low_complexity 1 37 0 5 1109 322 235 15 0 chr9 68803733 68803801 -55272371 + MIRc SINE MIR 86 154 -114 5 1109 1251 86 0 0 chr9 68804675 68804849 -55271323 + (GAA)n Simple_repeat Simple_repeat 2 175 0 5 1109 183 378 0 22 chr9 68805315 68805407 -55270765 - MER5B DNA MER1_type -62 116 27 5 1109 192 77 0 0 chr9 68805855 68805881 -55270291 + (TCC)n Simple_repeat Simple_repeat 2 27 0 5 1109 257 349 129 7 chr9 68806012 68806159 -55270013 - MIRb SINE MIR -2 266 102 5 1109 589 296 15 31 chr9 68806282 68806477 -55269695 - MER3 DNA MER1_type -5 204 13 5 1109 270 225 0 0 chr9 68806677 68806757 -55269415 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1109 285 318 24 8 chr9 68807578 68807705 -55268467 + L1ME1 LINE L1 6050 6178 -1 5 1109 586 287 13 13 chr9 68808409 68808561 -55267611 + ID_B1 SINE B4 67 218 -6 5 1109 886 221 30 30 chr9 68808610 68808811 -55267361 - B3 SINE B2 -15 201 1 5 1109 235 318 34 11 chr9 68809035 68809124 -55267048 + RSINE1 SINE B4 75 165 0 5 1109 632 286 11 28 chr9 68809169 68809345 -55266827 + B4 SINE B4 17 189 -103 5 1109 447 292 14 55 chr9 68809463 68809608 -55266564 + RSINE1 SINE B4 27 165 0 5 1109 437 333 70 90 chr9 68809671 68809915 -55266257 + B4A SINE B4 3 241 -51 5 1109 419 87 14 0 chr9 68809966 68810035 -55266137 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1109 306 0 0 0 chr9 68811090 68811124 -55265048 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 1109 360 0 0 0 chr9 68811124 68811164 -55265008 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1109 366 255 101 19 chr9 68811167 68811297 -55264875 + B4 SINE B4 9 141 -83 5 1109 599 175 8 8 chr9 68811301 68811422 -55264750 + Lx2 LINE L1 6877 6997 0 5 1109 665 299 50 15 chr9 68811443 68811643 -55264529 + B4 SINE B4 82 288 -4 5 1109 396 0 0 0 chr9 68811708 68811752 -55264420 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1109 22 80 0 0 chr9 68811758 68811808 -55264364 + AT_rich Low_complexity Low_complexity 1 50 0 5 1110 807 277 50 40 chr9 68813073 68813351 -55262821 + B4A SINE B4 2 282 -10 5 1110 270 0 0 0 chr9 68813351 68813381 -55262791 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1110 21 0 0 0 chr9 68813428 68813449 -55262723 + AT_rich Low_complexity Low_complexity 1 21 0 5 1110 869 130 15 15 chr9 68814976 68815109 -55261063 - B3A SINE B2 -65 133 1 5 1110 342 0 0 0 chr9 68816106 68816144 -55260028 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1110 961 229 4 43 chr9 68816284 68816517 -55259655 + ID_B1 SINE B4 1 224 0 5 1110 223 245 20 0 chr9 68816542 68816591 -55259581 + GA-rich Low_complexity Low_complexity 2 51 0 5 1110 240 319 91 81 chr9 68816657 68816756 -55259416 + MER63B DNA AcHobo 331 430 -6 5 1110 1312 256 95 6 chr9 68816779 68817117 -55259055 + MTE2b LTR MaLR 1 368 -11 5 1110 459 0 0 0 chr9 68817520 68817571 -55258601 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1110 810 281 122 13 chr9 68817592 68817683 -55258489 + B4A SINE B4 12 99 -193 6 1110 369 62 0 0 chr9 68817683 68817731 -55258441 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1110 810 281 122 13 chr9 68817731 68817877 -55258295 + B4A SINE B4 100 274 -18 6 1110 23 0 0 0 chr9 68817928 68817951 -55258221 + AT_rich Low_complexity Low_complexity 1 23 0 6 1110 1260 313 52 11 chr9 68818104 68818544 -55257628 + MER119 DNA MER1_type 5 462 -121 6 1110 528 16 0 0 chr9 68819177 68819238 -55256934 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1110 693 259 55 159 chr9 68819258 68819584 -55256588 - B4A SINE B4 0 292 1 6 1110 276 190 0 0 chr9 68820532 68820611 -55255561 + CT-rich Low_complexity Low_complexity 2 80 0 6 1110 465 19 0 0 chr9 68820616 68820670 -55255502 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1110 226 301 216 0 chr9 68821159 68821338 -55254834 + MIR SINE MIR 37 247 -21 6 1110 611 275 194 8 chr9 68821754 68821996 -55254176 + B4 SINE B4 2 288 -4 6 1110 843 274 10 0 chr9 68822055 68822263 -55253909 - B3 SINE B2 -4 212 3 6 1110 257 248 0 52 chr9 68822823 68822976 -55253196 + (CATA)n Simple_repeat Simple_repeat 2 146 0 6 1110 369 385 0 0 chr9 68822989 68823168 -55253004 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 6 1110 288 53 0 0 chr9 68823171 68823209 -55252963 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1110 662 215 0 8 chr9 68823844 68823966 -55252206 + B1F2 SINE Alu 21 141 -8 6 1110 239 245 0 0 chr9 68825559 68825608 -55250564 + MER5A DNA MER1_type 1 49 -140 6 1110 1063 254 20 50 chr9 68825621 68825919 -55250253 + B4A SINE B4 4 292 0 6 1110 269 339 100 33 chr9 68826707 68826887 -55249285 + MIR3 SINE MIR 17 208 0 6 1110 1046 249 11 70 chr9 68827126 68827411 -55248761 + B4A SINE B4 2 269 -23 6 1110 414 108 0 0 chr9 68827436 68827501 -55248671 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1110 1144 257 150 18 chr9 68828166 68828499 -55247673 - MTE2b LTR MaLR -2 377 1 6 1110 600 255 0 26 chr9 68828882 68829035 -55247137 + B1_Mur2 SINE Alu 1 149 0 6 1110 256 303 80 35 chr9 68829197 68829310 -55246862 - MER117 DNA MER1_type -75 122 5 6 1110 244 294 0 14 chr9 68830935 68831004 -55245168 + MIR3 SINE MIR 109 176 -32 6 1110 674 226 0 4 chr9 68831778 68832043 -55244129 + CT-rich Low_complexity Low_complexity 1 264 0 6 1110 351 0 0 0 chr9 68832517 68832556 -55243616 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 1110 334 300 76 52 chr9 68832652 68832940 -55243232 + RMER12 LTR ERVK 771 1065 -257 6 1110 738 81 0 0 chr9 68833912 68834023 -55242149 + (TG)n Simple_repeat Simple_repeat 2 112 0 6 1110 804 272 31 129 chr9 68834059 68834376 -55241796 - B4 SINE B4 -6 286 1 6 1110 272 27 27 0 chr9 68834393 68834430 -55241742 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 1110 355 34 68 0 chr9 68834637 68834696 -55241476 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 6 1110 821 63 0 0 chr9 68835363 68835474 -55240698 - B2_Mm2 SINE B2 -83 112 2 6 1110 351 227 18 35 chr9 68835924 68836038 -55240134 - MLT1H1 LTR MaLR -16 539 428 6 1110 1238 256 48 30 chr9 68836057 68836428 -55239744 - MTE2a LTR MaLR -1 378 1 6 1110 337 337 78 16 chr9 68836538 68836731 -55239441 - MLT1H1 LTR MaLR -346 209 5 6 1110 531 156 29 18 chr9 68837204 68837374 -55238798 + (TCTCTG)n Simple_repeat Simple_repeat 3 174 0 6 1110 770 208 0 11 chr9 68838128 68838308 -55237864 + CT-rich Low_complexity Low_complexity 3 180 0 6 1110 714 152 16 23 chr9 68838319 68838447 -55237725 - B1_Mur4 SINE Alu -1 149 23 6 1110 534 237 0 0 chr9 68838582 68838721 -55237451 + (TG)n Simple_repeat Simple_repeat 2 140 0 6 1110 224 220 0 33 chr9 68838731 68838792 -55237380 - B3A SINE B2 -139 59 1 6 1110 280 317 0 0 chr9 68839090 68839172 -55237000 - ID4 SINE ID 0 83 2 6 1110 1148 276 60 51 chr9 68839278 68839648 -55236524 + MTD LTR MaLR 33 405 -14 6 1110 310 278 77 115 chr9 68840308 68840438 -55235734 - MER20 DNA MER1_type -94 125 1 6 1110 195 42 0 0 chr9 68841394 68841418 -55234754 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1110 375 78 0 0 chr9 68841524 68841575 -55234597 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1110 303 365 18 48 chr9 68842533 68842727 -55233445 - MIR SINE MIR -82 186 1 6 1110 519 232 130 0 chr9 68843981 68844119 -55232053 - B3A SINE B2 -25 173 18 6 1110 1092 258 98 9 chr9 68844328 68844653 -55231519 - ORR1D2 LTR MaLR -14 356 3 6 1110 680 98 0 39 chr9 68844677 68844730 -55231442 + (TTC)n Simple_repeat Simple_repeat 1 52 0 6 1110 1305 83 0 0 chr9 68844730 68844910 -55231262 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1110 680 98 0 39 chr9 68844910 68844984 -55231188 + (TTC)n Simple_repeat Simple_repeat 2 72 0 6 1110 769 258 63 0 chr9 68844999 68845189 -55230983 - B3 SINE B2 -14 202 1 6 1110 352 287 75 49 chr9 68845230 68845497 -55230675 - L1M4 LINE L1 -985 5161 4888 6 1110 794 254 5 16 chr9 68845667 68845851 -55230321 + B3A SINE B2 2 183 -15 6 1110 554 272 66 0 chr9 68846356 68846492 -55229680 + B3A SINE B2 40 184 -14 6 1110 242 326 41 0 chr9 68847748 68847846 -55228326 + MER58A DNA MER1_type 10 111 -113 6 1110 382 310 21 21 chr9 68848015 68848160 -55228012 + RSINE1 SINE B4 21 165 0 6 1110 985 182 129 17 chr9 68848254 68848494 -55227678 + RLTR11A2 LTR ERVK 261 527 0 6 1110 183 80 0 0 chr9 68849348 68849373 -55226799 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 6 1110 453 275 0 0 chr9 68849410 68849588 -55226584 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 1110 290 206 98 24 chr9 68849751 68849860 -55226312 + Lx7 LINE L1 5781 5896 -1800 6 1110 555 288 31 45 chr9 68851042 68851264 -55224908 - L1MD3 LINE L1 -49 7946 7728 6 1110 748 147 6 11 chr9 68851405 68851584 -55224588 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 1110 351 0 0 0 chr9 68851624 68851663 -55224509 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1110 387 0 0 0 chr9 68851663 68851705 -55224467 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1110 232 270 161 86 chr9 68851739 68851901 -55224271 - B4A SINE B4 -118 174 1 6 1110 425 246 27 0 chr9 68852618 68852728 -55223444 + PB1D10 SINE Alu 1 113 -4 6 1110 737 284 95 40 chr9 68853041 68853294 -55222878 + B4 SINE B4 3 269 -23 6 1110 405 39 0 0 chr9 68853295 68853346 -55222826 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1110 302 320 57 81 chr9 68853411 68853795 -55222377 - MTEa LTR MaLR -4 375 1 6 1110 1020 247 33 149 chr9 68855011 68855396 -55220776 + MTE2a LTR MaLR 6 341 -38 6 1110 470 17 0 17 chr9 68855396 68855456 -55220716 + (GTTTG)n Simple_repeat Simple_repeat 5 63 0 6 1110 1020 247 33 149 chr9 68855456 68855493 -55220679 + MTE2a LTR MaLR 342 378 -1 6 1110 403 228 28 47 chr9 68855977 68856083 -55220089 - MLT1A1 LTR MaLR 0 408 305 6 1110 253 257 200 0 chr9 68857102 68857172 -55219000 + RSINE1 SINE B4 1 84 -81 6 1110 323 371 72 20 chr9 68857176 68857468 -55218704 - MER21B LTR ERV1 -232 631 325 6 1110 207 0 0 0 chr9 68857479 68857502 -55218670 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6 1110 344 284 112 26 chr9 68857526 68857678 -55218494 - MER21B LTR ERV1 -599 264 100 6 1110 265 286 38 25 chr9 68857744 68857823 -55218349 - MER21B LTR ERV1 -773 90 11 6 1110 222 118 0 0 chr9 68857996 68858030 -55218142 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1110 765 314 69 16 chr9 68858980 68859297 -55216875 - MER2 DNA MER2_type -1 344 11 6 1110 189 0 0 0 chr9 68859646 68859667 -55216505 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1110 240 311 18 54 chr9 68860119 68860231 -55215941 - MIRb SINE MIR -36 232 125 6 1110 303 228 12 25 chr9 68860431 68860512 -55215660 + (TATG)n Simple_repeat Simple_repeat 3 82 0 6 1110 294 293 89 65 chr9 68860631 68860755 -55215417 - B4A SINE B4 -164 128 2 6 1110 195 226 94 0 chr9 68860883 68860936 -55215236 + MIR SINE MIR 57 114 -94 6 1110 204 40 0 0 chr9 68861645 68861670 -55214502 + (AAATG)n Simple_repeat Simple_repeat 1 25 0 6 1110 708 331 28 24 chr9 68861675 68861963 -55214209 + B4 SINE B4 2 290 -2 6 1110 528 16 0 0 chr9 68862031 68862092 -55214080 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1110 616 304 12 2 chr9 68863472 68863663 -55212509 + B3A SINE B2 12 201 -15 6 1110 197 154 39 0 chr9 68863663 68863715 -55212457 + (CACG)n Simple_repeat Simple_repeat 3 56 0 6 1110 336 283 0 32 chr9 68863766 68863861 -55212311 + ID_B1 SINE B4 104 195 -29 6 1110 727 182 0 12 chr9 68863987 68864049 -55212123 + polypurine Low_complexity Low_complexity 2 63 0 6 1110 1422 33 0 0 chr9 68864049 68864229 -55211943 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1110 727 182 0 12 chr9 68864229 68864283 -55211889 + polypurine Low_complexity Low_complexity 64 117 0 6 1110 1143 94 0 0 chr9 68864283 68864463 -55211709 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1110 727 182 0 12 chr9 68864463 68864512 -55211660 + polypurine Low_complexity Low_complexity 118 166 0 6 1110 960 88 0 0 chr9 68864513 68864649 -55211523 + (GAAA)n Simple_repeat Simple_repeat 4 139 0 6 1110 195 42 0 0 chr9 68864650 68864674 -55211498 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1110 2768 225 91 19 chr9 68864674 68865513 -55210659 + RCHARR1 DNA MER1_type 73 971 -3 6 1110 386 227 165 0 chr9 68865701 68865798 -55210374 + RSINE1 SINE B4 3 115 -50 6 1110 297 0 0 0 chr9 68865804 68865837 -55210335 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1110 370 290 44 22 chr9 68866652 68866874 -55209298 - B4 SINE B4 -38 254 2 6 1110 201 254 55 0 chr9 68867860 68867915 -55208257 - MIRm SINE MIR -106 170 113 7 1110 724 275 42 8 chr9 68868625 68868863 -55207309 - MER2 DNA MER2_type -14 331 86 7 1110 899 171 0 12 chr9 68869765 68870014 -55206158 + GA-rich Low_complexity Low_complexity 1 245 0 7 1110 586 265 73 48 chr9 68870574 68870780 -55205392 - B3 SINE B2 -4 212 2 7 1110 402 239 18 44 chr9 68870786 68870900 -55205272 - PB1D10 SINE Alu -4 113 3 7 1110 1785 241 28 15 chr9 68871758 68872158 -55204014 - MTD LTR MaLR -14 405 1 7 1110 1132 178 23 33 chr9 68872220 68872435 -55203737 - B3 SINE B2 0 216 4 7 1110 183 114 0 0 chr9 68872725 68872760 -55203412 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 7 1110 445 272 0 10 chr9 68872942 68873046 -55203126 - RSINE1 SINE B4 -61 104 2 7 1110 538 306 6 0 chr9 68873265 68873422 -55202750 + RSINE1 SINE B4 3 160 -5 7 1110 218 329 25 0 chr9 68874561 68874640 -55201532 - MIRb SINE MIR -21 247 167 7 1110 203 179 0 0 chr9 68875946 68875985 -55200187 + T-rich Low_complexity Low_complexity 1 39 0 7 1110 308 326 97 22 chr9 68876319 68876504 -55199668 - MIR SINE MIR -17 245 47 7 1110 1591 253 11 5 chr9 68877124 68877501 -55198671 - MTEb LTR MaLR 0 379 1 7 1110 304 325 24 8 chr9 68877508 68877632 -55198540 + MER63C DNA AcHobo 274 399 -531 7 1110 796 300 17 22 chr9 68877800 68878032 -55198140 - B4A SINE B4 -10 282 52 7 1110 206 243 26 97 chr9 68878223 68878337 -55197835 - L2a LINE L2 -65 3361 3256 7 1110 590 279 154 4 chr9 68878539 68878805 -55197367 - MLT1D LTR MaLR -148 357 52 7 1110 681 234 191 0 chr9 68878958 68879146 -55197026 + ID_B1 SINE B4 1 224 0 7 1110 228 135 0 0 chr9 68879772 68879809 -55196363 + (CATA)n Simple_repeat Simple_repeat 3 39 0 7 1110 333 0 0 0 chr9 68879821 68879858 -55196314 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1110 334 291 468 16 chr9 68880247 68880446 -55195726 + B4 SINE B4 2 290 -2 7 1110 399 296 0 57 chr9 68880489 68880611 -55195561 + B4A SINE B4 34 148 -144 7 1110 468 0 0 0 chr9 68880620 68880672 -55195500 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1110 426 20 0 0 chr9 68880672 68880722 -55195450 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1110 396 0 0 0 chr9 68881043 68881087 -55195085 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1110 198 297 78 78 chr9 68881419 68881547 -55194625 - MIRm SINE MIR -146 130 3 7 1110 380 282 38 57 chr9 68881599 68881757 -55194415 + RSINE1 SINE B4 2 156 -9 7 1110 450 0 0 0 chr9 68882989 68883039 -55193133 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1110 710 289 55 65 chr9 68884378 68884773 -55191399 - MTE2a LTR MaLR 0 419 18 7 1110 256 135 68 0 chr9 68886002 68886076 -55190096 + GA-rich Low_complexity Low_complexity 2 80 0 7 1110 649 252 17 1 chr9 68887016 68887195 -55188977 + B3A SINE B2 27 211 -5 7 1110 503 306 176 0 chr9 68888408 68888578 -55187594 - B4 SINE B4 -91 201 2 7 1110 230 140 0 107 chr9 68889856 68889912 -55186260 + LTRIS2 LTR ERV1 445 494 -70 7 1110 204 349 0 44 chr9 68890335 68890425 -55185747 - MIRb SINE MIR -62 206 121 7 1110 222 205 0 0 chr9 68890567 68890606 -55185566 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1110 324 320 29 10 chr9 68891357 68891461 -55184711 - MER81 DNA AcHobo 0 114 9 7 1110 377 206 166 97 chr9 68891502 68891647 -55184525 - MLT1J LTR MaLR -341 171 17 7 1110 402 265 124 22 chr9 68892873 68893058 -55183114 + L1ME4a LINE L1 5798 6001 -123 7 1110 519 326 5 16 chr9 68893063 68893247 -55182925 + B3A SINE B2 1 182 -16 7 1110 607 310 70 15 chr9 68893632 68893891 -55182281 - MER2 DNA MER2_type -72 273 1 7 1110 498 17 0 0 chr9 68894002 68894061 -55182111 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 1110 226 200 0 127 chr9 68895339 68895402 -55180770 + B4 SINE B4 29 83 -209 7 1110 622 230 52 75 chr9 68895362 68895536 -55180636 + B3 SINE B2 47 216 0 7 1110 730 222 33 47 chr9 68896074 68896287 -55179885 - ID_B1 SINE B4 -13 211 2 7 1110 573 247 41 58 chr9 68896580 68896752 -55179420 + ID_B1 SINE B4 49 217 -7 7 1110 926 63 0 8 chr9 68896753 68896880 -55179292 + (GAAAA)n Simple_repeat Simple_repeat 2 127 0 7 1110 444 37 0 0 chr9 68896885 68896939 -55179233 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 7 1110 776 232 21 58 chr9 68897992 68898180 -55177992 + B3A SINE B2 3 183 -15 7 1110 561 325 30 45 chr9 68899335 68899535 -55176637 + B3A SINE B2 1 197 -1 7 1110 324 317 23 38 chr9 68899642 68899773 -55176399 - MIR SINE MIR -73 189 61 7 1110 207 0 0 0 chr9 68900476 68900499 -55175673 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1110 213 154 0 0 chr9 68900550 68900589 -55175583 + (CTTA)n Simple_repeat Simple_repeat 1 39 0 7 1110 1165 268 148 6 chr9 68900880 68901237 -55174935 + MTD LTR MaLR 12 419 0 7 1110 282 339 37 47 chr9 68902216 68902382 -55173790 - MIR SINE MIR -70 192 29 7 1110 383 318 33 111 chr9 68902554 68902798 -55173374 + MIR SINE MIR 31 255 -7 7 1110 232 317 0 0 chr9 68902817 68902877 -55173295 - L2c LINE L2 -47 3340 3281 7 1110 738 316 47 0 chr9 68903644 68903856 -55172316 + ID_B1 SINE B4 1 222 -2 7 1110 378 0 0 0 chr9 68903870 68903912 -55172260 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1110 360 0 0 0 chr9 68904251 68904291 -55171881 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1110 239 29 0 54 chr9 68904296 68904333 -55171839 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 7 1110 225 65 0 0 chr9 68904469 68904500 -55171672 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1110 648 289 81 20 chr9 68906073 68906271 -55169901 - ID_B1 SINE B4 -11 213 4 7 1110 1034 253 103 12 chr9 68906342 68906665 -55169507 + ORR1E LTR MaLR 1 374 0 7 1110 186 109 118 98 chr9 68907193 68907244 -55168928 - L2b LINE L2 0 3375 3324 7 1110 210 364 45 9 chr9 68907922 68908033 -55168139 - MIRc SINE MIR -67 201 87 7 1110 1061 106 58 43 chr9 68908309 68908497 -55167675 - B2_Mm2 SINE B2 -3 192 2 7 1110 416 367 82 29 chr9 68908641 68908885 -55167287 + B4A SINE B4 11 267 -25 7 1110 1185 60 0 0 chr9 68908925 68909092 -55167080 + (TC)n Simple_repeat Simple_repeat 1 167 0 7 1110 341 301 124 6 chr9 68909935 68910112 -55166060 + HAL1 LINE L1 84 281 -2226 7 1110 810 231 23 23 chr9 68910173 68910346 -55165826 - ID_B1 SINE B4 -1 223 51 7 1110 270 0 0 0 chr9 68910557 68910587 -55165585 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1110 581 266 183 16 chr9 68911118 68911309 -55164863 + ID_B1 SINE B4 2 224 0 7 1110 764 331 111 61 chr9 68911386 68911812 -55164360 + HAL1 LINE L1 1284 1768 -739 7 1110 1057 209 55 0 chr9 68911812 68912013 -55164159 + B3 SINE B2 5 216 0 7 1110 764 331 111 61 chr9 68912013 68912744 -55163428 + HAL1 LINE L1 1769 2499 -8 7 1110 1266 247 32 25 chr9 68912769 68913051 -55163121 + B4A SINE B4 1 284 -8 7 1110 795 339 8 14 chr9 68913148 68913405 -55162767 + ID_B1 SINE B4 5 251 -41 7 1110 234 0 0 0 chr9 68914053 68914079 -55162093 + (CTG)n Simple_repeat Simple_repeat 1 26 0 7 1110 692 256 43 31 chr9 68914705 68914866 -55161306 + RSINE1 SINE B4 3 165 0 7 1110 233 318 120 71 chr9 68914866 68914888 -55161284 + B3A SINE B2 2 193 -5 7 1110 257 244 0 11 chr9 68915642 68915729 -55160443 + GA-rich Low_complexity Low_complexity 3 88 0 7 1110 414 0 0 0 chr9 68915836 68915882 -55160290 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1110 236 308 48 18 chr9 68916365 68916488 -55159684 - MIR SINE MIR -101 161 35 7 1110 904 277 9 35 chr9 68916581 68916813 -55159359 + B4 SINE B4 2 227 -65 7 1110 771 238 113 10 chr9 68916813 68917008 -55159164 + B3 SINE B2 1 215 -1 7 1110 321 254 0 0 chr9 68917027 68917086 -55159086 + B4 SINE B4 221 279 -13 7 1110 718 86 21 74 chr9 68917996 68918185 -55157987 + (CA)n Simple_repeat Simple_repeat 1 179 0 7 1110 417 247 24 83 chr9 68918767 68918935 -55157237 + HAL1-2a_MD LINE L1 2345 2502 -522 7 1110 921 200 45 30 chr9 68920453 68920654 -55155518 + B4 SINE B4 2 205 -87 7 1110 536 239 20 53 chr9 68920664 68920814 -55155358 + RSINE1 SINE B4 2 146 -19 7 1110 339 85 0 0 chr9 68920908 68920955 -55155217 + (CATA)n Simple_repeat Simple_repeat 4 50 0 7 1110 22 0 0 0 chr9 68920961 68920983 -55155189 + AT_rich Low_complexity Low_complexity 1 22 0 7 1110 1038 259 29 7 chr9 68921490 68921762 -55154410 + B4 SINE B4 3 280 -12 7 1110 708 268 48 0 chr9 68922188 68922356 -55153816 + ID_B1 SINE B4 46 221 -3 7 1110 324 299 92 114 chr9 68922668 68922895 -55153277 - MIRb SINE MIR -40 228 7 7 1110 231 361 79 45 chr9 68923000 68923032 -55153140 + B4A SINE B4 63 170 -122 7 1110 434 239 0 128 chr9 68923032 68923157 -55153015 + PB1D9 SINE Alu 11 119 -1 7 1110 231 361 79 45 chr9 68923157 68923177 -55152995 + B4A SINE B4 171 245 -47 7 1110 634 173 8 8 chr9 68923177 68923311 -55152861 + GA-rich Low_complexity Low_complexity 1 134 0 7 1110 411 56 0 0 chr9 68923470 68923524 -55152648 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1110 363 218 11 13 chr9 68923630 68923725 -55152447 - B4 SINE B4 -39 253 156 7 1110 331 253 25 0 chr9 68923754 68923833 -55152339 - B4A SINE B4 -209 83 3 7 1110 312 91 0 0 chr9 68923879 68923923 -55152249 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1110 432 0 0 0 chr9 68923923 68923970 -55152202 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1110 500 292 109 0 chr9 68925382 68925519 -55150653 + RSINE1 SINE B4 4 155 -10 8 1110 1301 287 53 34 chr9 68925953 68926364 -55149808 - MTD LTR MaLR 0 419 1 8 1110 514 307 35 78 chr9 68926390 68926761 -55149411 - L1MEg LINE L1 -4697 1387 1033 8 1110 461 293 16 31 chr9 68926782 68926909 -55149263 - RSINE1 SINE B4 -14 151 27 8 1110 612 0 0 0 chr9 68926952 68927020 -55149152 + (TC)n Simple_repeat Simple_repeat 1 68 0 8 1110 5416 8 0 0 chr9 68927393 68928134 -55148038 - L1Md_T LINE L1 -565 6017 5277 8 1110 5178 9 0 0 chr9 68928134 68928699 -55147473 + L1Md_T LINE L1 6018 6582 0 8 1110 570 265 19 5 chr9 68928802 68928835 -55147337 + ID_B1 SINE B4 8 222 -2 8 1110 356 315 60 45 chr9 68928835 68928968 -55147204 + B1F1 SINE Alu 15 149 0 8 1110 753 284 83 29 chr9 68929326 68929602 -55146570 - B4A SINE B4 -1 291 1 8 1110 557 295 89 106 chr9 68930110 68930146 -55146026 - ORR1E LTR MaLR 0 359 325 8 1110 1166 254 21 62 chr9 68930146 68930519 -55145653 + ORR1E LTR MaLR 1 358 -1 8 1110 557 295 89 106 chr9 68930519 68930842 -55145330 - ORR1E LTR MaLR -35 324 6 8 1110 773 267 37 28 chr9 68931383 68931599 -55144573 - ID_B1 SINE B4 -6 218 1 8 1110 367 304 79 88 chr9 68933070 68933412 -55142760 + L2c LINE L2 3043 3381 -6 8 1110 686 136 8 0 chr9 68933511 68933629 -55142543 + (GA)n Simple_repeat Simple_repeat 1 119 0 8 1110 731 185 50 50 chr9 68933657 68933839 -55142333 + RMER10A LTR ERVL 12 193 -249 8 1110 220 252 17 17 chr9 68933851 68933968 -55142204 + (CATATA)n Simple_repeat Simple_repeat 4 120 0 8 1110 251 324 28 21 chr9 68933978 68934123 -55142049 + (CATG)n Simple_repeat Simple_repeat 3 148 0 8 1110 246 269 24 60 chr9 68934438 68934521 -55141651 + ID_B1 SINE B4 102 181 -43 8 1110 220 294 39 98 chr9 68934521 68934540 -55141632 + PB1D10 SINE Alu 21 116 -1 8 1110 207 0 0 0 chr9 68935320 68935343 -55140829 + (TGG)n Simple_repeat Simple_repeat 1 23 0 8 1110 846 292 19 5 chr9 68936644 68936857 -55139315 + ID_B1 SINE B4 4 219 -5 8 1110 772 255 94 90 chr9 68937922 68938189 -55137983 + B4 SINE B4 6 273 -19 8 1110 324 120 0 0 chr9 68938216 68938266 -55137906 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1110 315 277 76 0 chr9 68938267 68938386 -55137786 + L1MA8 LINE L1 6161 6288 -3 8 1110 387 0 0 0 chr9 68938683 68938726 -55137446 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1110 325 283 0 0 chr9 68938726 68938825 -55137347 + GA-rich Low_complexity Low_complexity 2 100 0 8 1110 982 235 58 5 chr9 68939644 68939849 -55136323 - ID_B1 SINE B4 -4 220 5 8 1110 547 259 36 102 chr9 68940845 68941150 -55135022 - B4A SINE B4 -7 285 1 8 1110 275 352 9 0 chr9 68941150 68941258 -55134914 + MIR SINE MIR 77 185 -77 8 1110 23 33 0 0 chr9 68942604 68942634 -55133538 + AT_rich Low_complexity Low_complexity 1 30 0 8 1110 622 319 147 25 chr9 68942707 68942945 -55133227 - B4A SINE B4 -20 272 6 8 1110 468 0 0 0 chr9 68943014 68943066 -55133106 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1111 1625 221 80 35 chr9 68944079 68944597 -55131575 - RMER4B LTR ERVK -2 583 8 8 1111 742 278 115 17 chr9 68944593 68944827 -55131345 + B4 SINE B4 34 290 -2 8 1111 458 310 18 54 chr9 68945800 68945967 -55130205 - RSINE1 SINE B4 -2 163 3 8 1111 413 240 23 15 chr9 68946105 68946227 -55129945 - MIR SINE MIR -119 157 33 8 1111 415 330 42 57 chr9 68946974 68947186 -55128986 + B4A SINE B4 83 291 -1 8 1111 288 53 0 0 chr9 68947242 68947280 -55128892 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1111 1148 90 4 0 chr9 68947381 68947630 -55128542 + (CTGTG)n Simple_repeat Simple_repeat 1 250 0 8 1111 347 106 0 15 chr9 68947630 68947671 -55128501 + (TCCTG)n Simple_repeat Simple_repeat 4 44 0 8 1111 1302 56 0 0 chr9 68947671 68947851 -55128321 + (CTGTG)n Simple_repeat Simple_repeat 1 180 0 8 1111 347 106 0 15 chr9 68947851 68947876 -55128296 + (TCCTG)n Simple_repeat Simple_repeat 4 28 0 8 1111 1422 33 0 0 chr9 68947876 68948056 -55128116 + (CTGTG)n Simple_repeat Simple_repeat 1 180 0 8 1111 798 85 0 0 chr9 68948056 68948184 -55127988 + (GGCTG)n Simple_repeat Simple_repeat 1 129 0 8 1111 353 20 0 39 chr9 68948306 68948357 -55127815 + (CACAG)n Simple_repeat Simple_repeat 1 49 0 8 1111 395 339 88 11 chr9 68948570 68948752 -55127420 - MIR SINE MIR -27 235 40 8 1111 571 304 19 6 chr9 68948771 68948933 -55127239 + MER117 DNA MER1_type 1 164 -33 8 1111 846 274 98 23 chr9 68951185 68951450 -55124722 + B4 SINE B4 3 287 -5 8 1111 378 0 0 0 chr9 68951480 68951522 -55124650 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1111 540 158 0 0 chr9 68951888 68951983 -55124189 + GA-rich Low_complexity Low_complexity 2 96 0 8 1111 525 278 18 83 chr9 68952684 68952912 -55123260 - B3 SINE B2 -3 213 1 8 1111 505 249 159 21 chr9 68953727 68953916 -55122256 - ID_B1 SINE B4 -9 215 1 8 1111 207 0 0 0 chr9 68954418 68954441 -55121731 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1111 215 227 0 0 chr9 68955344 68955388 -55120784 + A-rich Low_complexity Low_complexity 2 45 0 8 1111 306 0 0 0 chr9 68956930 68956964 -55119208 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1111 668 245 0 34 chr9 68956981 68957129 -55119043 - ID_B1 SINE B4 0 224 82 8 1111 279 104 0 0 chr9 68958876 68958924 -55117248 + (T)n Simple_repeat Simple_repeat 1 48 0 8 1111 302 0 26 0 chr9 68959013 68959051 -55117121 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1111 227 320 87 29 chr9 68959457 68959560 -55116612 + PB1D7 SINE Alu 2 110 -10 8 1111 233 298 169 81 chr9 68959947 68960119 -55116053 + MamGypLTR3 LTR Gypsy 228 414 -425 8 1111 246 304 0 0 chr9 68960196 68960265 -55115907 + GA-rich Low_complexity Low_complexity 1 69 0 8 1111 693 307 86 46 chr9 68960273 68960553 -55115619 + B4A SINE B4 2 292 0 8 1111 1337 169 9 0 chr9 68960770 68960983 -55115189 + URR1B DNA MER1_type 1 215 -10 8 1111 342 0 0 0 chr9 68961174 68961212 -55114960 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1111 528 297 42 18 chr9 68961576 68961744 -55114428 - MIR3 SINE MIR -7 201 30 8 1111 858 162 0 0 chr9 68961799 68961959 -55114213 + CT-rich Low_complexity Low_complexity 2 161 0 8 1111 306 0 0 0 chr9 68961959 68961993 -55114179 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1111 25 0 0 0 chr9 68963151 68963176 -55112996 + AT_rich Low_complexity Low_complexity 1 25 0 8 1111 228 289 134 72 chr9 68963454 68963648 -55112524 + RLTR21 LTR ERVK 1050 1255 -317 8 1111 666 132 0 0 chr9 68963648 68963784 -55112388 + (GA)n Simple_repeat Simple_repeat 1 136 0 8 1111 730 293 10 55 chr9 68963827 68964029 -55112143 - B4 SINE B4 -18 274 82 8 1111 198 0 0 0 chr9 68964037 68964059 -55112113 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1111 642 65 0 0 chr9 68964200 68964292 -55111880 + (TTTC)n Simple_repeat Simple_repeat 3 94 0 8 1111 375 23 0 0 chr9 68964429 68964473 -55111699 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1111 749 290 28 5 chr9 68964969 68965187 -55110985 + Tigger14a DNA MER2_type 15 237 -87 8 1111 854 237 12 0 chr9 68965224 68965393 -55110779 + ID_B1 SINE B4 1 171 -53 8 1111 377 292 34 0 chr9 68965313 68965402 -55110770 + PB1D10 SINE Alu 11 102 -15 8 1111 337 114 56 19 chr9 68965402 68965509 -55110663 + (TA)n Simple_repeat Simple_repeat 1 111 0 8 1111 578 14 14 0 chr9 68965659 68965730 -55110442 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1111 953 263 86 19 chr9 68966701 68966957 -55109215 + B4A SINE B4 2 274 -18 8 1111 234 0 0 0 chr9 68966962 68966988 -55109184 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1111 695 276 0 18 chr9 68967030 68967196 -55108976 + RSINE1 SINE B4 3 165 0 8 1111 987 114 0 0 chr9 68967883 68968148 -55108024 + (TG)n Simple_repeat Simple_repeat 1 265 0 8 1111 220 284 126 10 chr9 68968402 68968505 -55107667 + MIR SINE MIR 30 144 -64 8 1111 697 273 63 37 chr9 68968685 68968875 -55107297 - RMER30 DNA MER1_type -7 195 1 8 1111 491 283 46 55 chr9 68969047 68969264 -55106908 + CR1_Mam LINE CR1 785 999 -1205 8 1111 194 274 31 31 chr9 68969398 68969462 -55106710 - MIRm SINE MIR -17 259 196 8 1111 200 256 0 0 chr9 68969733 68969772 -55106400 + G-rich Low_complexity Low_complexity 1 39 0 8 1111 1103 241 70 12 chr9 68970142 68970398 -55105774 + B4 SINE B4 1 271 -21 8 1111 504 72 0 0 chr9 68970398 68970467 -55105705 + (TG)n Simple_repeat Simple_repeat 1 69 0 8 1111 243 0 0 0 chr9 68970468 68970495 -55105677 + (GA)n Simple_repeat Simple_repeat 1 27 0 8 1111 794 299 153 24 chr9 68970729 68971325 -55104847 - Charlie21a DNA MER1_type 0 1213 541 8 1111 270 0 0 0 chr9 68971637 68971667 -55104505 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1111 615 280 78 16 chr9 68971685 68971877 -55104295 + MER2 DNA MER2_type 1 204 -141 8 1111 238 358 89 41 chr9 68972125 68972294 -55103878 + MIRb SINE MIR 17 193 -75 8 1111 659 277 93 23 chr9 68972304 68972563 -55103609 - B4 SINE B4 -15 277 1 8 1111 180 328 126 0 chr9 68972642 68972761 -55103411 + L2c LINE L2 3254 3387 0 8 1111 180 0 0 0 chr9 68973480 68973500 -55102672 + (CCCG)n Simple_repeat Simple_repeat 1 20 0 8 1111 348 24 0 0 chr9 68974188 68974229 -55101943 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1111 821 241 85 53 chr9 68974236 68974517 -55101655 - B4A SINE B4 -1 291 2 8 1111 378 0 0 0 chr9 68974862 68974904 -55101268 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1111 347 295 151 57 chr9 68975386 68975585 -55100587 + MIRb SINE MIR 31 253 -9 9 1111 435 19 0 0 chr9 68975585 68975637 -55100535 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1111 337 295 151 57 chr9 68975637 68975649 -55100523 + MIR SINE MIR 254 262 0 9 1111 273 333 0 0 chr9 68976436 68976517 -55099655 - ID2 SINE ID -2 81 1 9 1111 543 268 7 27 chr9 68976547 68976693 -55099479 + B1F1 SINE Alu 5 147 -2 9 1111 753 289 100 110 chr9 68977087 68977468 -55098704 - MTE2a LTR MaLR 0 379 3 9 1111 492 18 0 0 chr9 68978626 68978683 -55097489 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1111 545 284 19 6 chr9 68978731 68978887 -55097285 + RSINE1 SINE B4 3 160 -5 9 1111 333 0 0 0 chr9 68978898 68978935 -55097237 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1111 507 305 97 26 chr9 68979307 68979576 -55096596 + B4A SINE B4 1 288 -4 9 1111 639 157 130 0 chr9 68979663 68979848 -55096324 - Lx9 LINE L1 -1 7643 7435 9 1111 794 293 50 15 chr9 68980288 68980489 -55095683 + B4 SINE B4 85 292 0 9 1111 985 92 11 33 chr9 68981946 68982126 -55094046 + (GGGAGA)n Simple_repeat Simple_repeat 5 180 0 9 1111 357 333 20 62 chr9 68982880 68983075 -55093097 - MIRc SINE MIR -62 206 20 9 1111 847 229 13 29 chr9 68983209 68983402 -55092770 + ID_B1 SINE B4 43 216 -76 9 1111 594 280 138 76 chr9 68983980 68984270 -55091902 + L1MA8 LINE L1 5684 5991 -300 9 1111 708 256 151 4 chr9 68984789 68985040 -55091132 + B4A SINE B4 1 288 -4 9 1111 637 310 154 52 chr9 68986418 68986826 -55089346 + MLT1C LTR MaLR 8 457 -10 9 1111 988 288 37 57 chr9 68986917 68987215 -55088957 - B4 SINE B4 0 292 1 9 1111 24 32 0 0 chr9 68987513 68987544 -55088628 + AT_rich Low_complexity Low_complexity 1 31 0 9 1111 824 209 0 7 chr9 68987561 68987710 -55088462 - RSINE1 SINE B4 -17 148 1 9 1111 180 0 0 0 chr9 68988826 68988846 -55087326 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1111 734 270 22 6 chr9 68990647 68990826 -55085346 - MER5A DNA MER1_type -1 188 7 9 1111 226 294 35 23 chr9 68991300 68991387 -55084785 - MamRep605 Unknown Unknown -781 95 8 9 1111 519 90 0 0 chr9 68992167 68992245 -55083927 + (GA)n Simple_repeat Simple_repeat 1 78 0 9 1111 620 130 31 12 chr9 68992325 68992488 -55083684 + (TG)n Simple_repeat Simple_repeat 1 166 0 9 1111 353 22 22 0 chr9 68992505 68992551 -55083621 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1111 305 266 50 99 chr9 68992888 68993009 -55083163 + PB1D10 SINE Alu 3 117 0 9 1111 361 293 24 24 chr9 68993501 68993627 -55082545 + MER117 DNA MER1_type 29 154 -43 9 1111 633 285 28 16 chr9 68993727 68993909 -55082263 + ID_B1 SINE B4 15 198 -26 9 1111 332 284 38 45 chr9 68993794 68993927 -55082245 + B1F SINE Alu 5 136 -13 9 1111 231 114 0 0 chr9 68994314 68994349 -55081823 + (GAA)n Simple_repeat Simple_repeat 2 36 0 9 1111 284 264 125 54 chr9 68994350 68994462 -55081710 + B1F SINE Alu 3 122 -27 9 1111 950 230 56 0 chr9 68994868 68995064 -55081108 - B3 SINE B2 -5 211 5 9 1111 1213 28 7 0 chr9 68995370 68995512 -55080660 + B1_Mm SINE Alu 5 147 0 9 1111 729 0 0 0 chr9 68995513 68995594 -55080578 + (GAGAA)n Simple_repeat Simple_repeat 4 84 0 9 1111 768 192 26 13 chr9 68995686 68995839 -55080333 + RSINE1 SINE B4 3 157 -8 9 1111 1146 100 0 0 chr9 68996339 68996519 -55079653 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1111 770 159 7 0 chr9 68996519 68996664 -55079508 + CT-rich Low_complexity Low_complexity 4 149 0 9 1111 213 194 0 0 chr9 68997293 68997329 -55078843 + polypurine Low_complexity Low_complexity 2 37 0 9 1111 827 291 7 39 chr9 68999249 68999528 -55076644 + B4A SINE B4 10 279 -13 9 1111 240 35 0 0 chr9 68999571 68999600 -55076572 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1111 221 365 90 41 chr9 68999692 68999886 -55076286 + MIR SINE MIR 41 235 -27 9 1111 450 0 0 0 chr9 68999914 68999964 -55076208 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1111 452 287 53 15 chr9 69000000 69000131 -55076041 + B3 SINE B2 81 216 0 1 1111 32 43 0 0 chr9 69001308 69001354 -55074818 + AT_rich Low_complexity Low_complexity 1 46 0 2 1111 824 186 6 0 chr9 69001734 69001906 -55074266 + CT-rich Low_complexity Low_complexity 2 174 0 3 1111 238 122 0 24 chr9 69001906 69001948 -55074224 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 4 1111 631 245 81 84 chr9 69003461 69003746 -55072426 + B4A SINE B4 5 288 -4 5 1111 846 244 57 0 chr9 69004927 69005120 -55071052 + ID_B1 SINE B4 7 210 -14 6 1111 864 29 0 0 chr9 69005120 69005223 -55070949 + (GAAA)n Simple_repeat Simple_repeat 1 103 0 7 1111 440 242 0 10 chr9 69005244 69005344 -55070828 + MTEa LTR MaLR 37 135 -244 8 1111 234 197 90 49 chr9 69005305 69005449 -55070723 + RMER17A2 LTR ERVK 247 396 -510 9 1111 198 240 20 20 chr9 69006505 69006603 -55069569 + (CATATA)n Simple_repeat Simple_repeat 6 103 0 1 1111 289 247 30 18 chr9 69006637 69006802 -55069370 + (CATATA)n Simple_repeat Simple_repeat 1 167 0 1 1111 230 286 0 0 chr9 69006841 69006897 -55069275 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1111 288 0 0 0 chr9 69007124 69007156 -55069016 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1111 372 22 0 0 chr9 69007156 69007200 -55068972 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1111 300 338 60 13 chr9 69009008 69009158 -55067014 + MER5A1 DNA MER1_type 10 166 0 1 1111 621 38 0 0 chr9 69009231 69009311 -55066861 + (TTC)n Simple_repeat Simple_repeat 1 80 0 1 1111 1171 70 0 0 chr9 69009332 69009474 -55066698 + B1_Mus2 SINE Alu 1 142 -5 1 1111 510 188 0 0 chr9 69009566 69009667 -55066505 + (TGG)n Simple_repeat Simple_repeat 1 101 0 1 1111 510 298 0 58 chr9 69009680 69009851 -55066321 - RSINE1 SINE B4 -1 164 4 1 1111 508 260 99 33 chr9 69009860 69010011 -55066161 - B3 SINE B2 0 216 56 1 1111 207 88 0 0 chr9 69010046 69010080 -55066092 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1111 219 255 0 0 chr9 69011150 69011201 -55064971 + CT-rich Low_complexity Low_complexity 3 53 0 2 1111 611 261 212 21 chr9 69011202 69011536 -55064636 - MTD LTR MaLR -31 388 6 2 1111 219 250 17 0 chr9 69011551 69011611 -55064561 + CT-rich Low_complexity Low_complexity 1 61 0 2 1111 386 239 65 33 chr9 69011637 69011738 -55064434 - L1MA4 LINE L1 -272 5902 5795 2 1111 696 43 0 0 chr9 69011738 69011830 -55064342 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1111 386 229 66 33 chr9 69011830 69011865 -55064307 - L1MA4 LINE L1 -506 5794 5763 2 1111 867 292 24 37 chr9 69012158 69012453 -55063719 + B4A SINE B4 2 292 0 2 1111 615 27 0 0 chr9 69012851 69012924 -55063248 + (GAAA)n Simple_repeat Simple_repeat 3 75 0 2 1111 348 281 8 58 chr9 69013998 69014119 -55062053 + RSINE1 SINE B4 4 118 -47 2 1111 302 277 79 0 chr9 69014247 69014348 -55061824 - PB1D10 SINE Alu -8 109 1 2 1111 387 297 11 0 chr9 69014383 69014474 -55061698 + B4 SINE B4 87 178 -114 3 1111 431 245 126 28 chr9 69014515 69014658 -55061514 + B4 SINE B4 136 292 0 3 1111 205 266 19 0 chr9 69014660 69014817 -55061355 + (CA)n Simple_repeat Simple_repeat 1 160 0 3 1111 1053 168 5 10 chr9 69015393 69015586 -55060586 - Lx2B LINE L1 -585 6415 6224 3 1111 644 195 263 9 chr9 69015575 69015803 -55060369 + Lx2B LINE L1 6713 6998 -2 3 1111 546 57 0 0 chr9 69015803 69015873 -55060299 + (GGA)n Simple_repeat Simple_repeat 1 70 0 3 1111 1943 212 16 6 chr9 69016730 69017096 -55059076 - ORR1D2 LTR MaLR 0 370 1 3 1111 239 250 19 32 chr9 69018303 69018460 -55057712 + GA-rich Low_complexity Low_complexity 4 158 0 3 1111 209 0 97 0 chr9 69018813 69018844 -55057328 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 3 1111 981 49 0 0 chr9 69019827 69019950 -55056222 + (TC)n Simple_repeat Simple_repeat 2 124 0 3 1111 378 0 0 0 chr9 69019950 69019991 -55056181 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1111 431 262 341 1 chr9 69020017 69020222 -55055950 - B4A SINE B4 -12 280 4 4 1111 191 95 48 0 chr9 69020252 69020294 -55055878 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1111 759 207 14 14 chr9 69020313 69020460 -55055712 + B1_Mur1 SINE Alu 3 149 0 4 1111 366 23 0 0 chr9 69021121 69021164 -55055008 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1111 291 54 0 0 chr9 69021164 69021201 -55054971 + (TGG)n Simple_repeat Simple_repeat 3 39 0 4 1111 436 358 0 0 chr9 69021204 69021355 -55054817 - RSINE1 SINE B4 -13 152 2 4 1111 279 79 0 0 chr9 69022418 69022456 -55053716 + (TCC)n Simple_repeat Simple_repeat 2 39 0 4 1111 507 33 0 0 chr9 69023090 69023151 -55053021 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1111 405 0 0 0 chr9 69023151 69023195 -55052977 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1111 584 286 5 74 chr9 69023526 69023715 -55052457 + ID_B1 SINE B4 1 176 -48 5 1111 606 63 0 0 chr9 69023723 69023802 -55052370 + (GGA)n Simple_repeat Simple_repeat 3 81 0 5 1111 227 130 43 0 chr9 69023825 69023871 -55052301 + ID_B1 SINE B4 111 158 -66 5 1111 1963 186 51 2 chr9 69023875 69024270 -55051902 - MTD LTR MaLR -14 405 1 5 1111 627 51 0 0 chr9 69025447 69025526 -55050646 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1111 249 218 229 73 chr9 69025533 69025642 -55050530 - B4 SINE B4 -37 128 3 5 1111 218 324 150 18 chr9 69025870 69025983 -55050189 - MER91A DNA Tip100 -51 145 18 5 1111 228 130 0 0 chr9 69026172 69026218 -55049954 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1111 669 230 17 64 chr9 69026915 69027087 -55049085 + B3A SINE B2 24 187 -11 5 1111 375 252 26 17 chr9 69027702 69027819 -55048353 + B1F2 SINE Alu 26 143 -6 5 1111 331 286 124 131 chr9 69028751 69028947 -55047225 + B4A SINE B4 3 219 -73 6 1111 547 234 92 28 chr9 69028947 69029088 -55047084 + RSINE1 SINE B4 4 153 -12 6 1111 432 0 0 0 chr9 69029096 69029144 -55047028 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1111 331 286 124 131 chr9 69029144 69029228 -55046944 + B4A SINE B4 220 290 -2 6 1111 495 0 0 0 chr9 69029259 69029314 -55046858 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1111 1067 23 0 8 chr9 69029807 69029938 -55046234 + (GAA)n Simple_repeat Simple_repeat 1 130 0 6 1111 336 127 0 0 chr9 69030724 69030779 -55045393 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1111 606 208 54 1 chr9 69030782 69030916 -55045256 - RSINE1 SINE B4 -22 143 2 6 1111 803 231 59 15 chr9 69031127 69031329 -55044843 + ID_B1 SINE B4 1 211 -13 6 1111 1097 82 0 6 chr9 69031338 69031497 -55044675 + (GGGA)n Simple_repeat Simple_repeat 4 161 0 6 1111 549 216 0 25 chr9 69031507 69031664 -55044508 + GA-rich Low_complexity Low_complexity 4 156 0 6 1111 439 299 35 66 chr9 69031664 69031861 -55044311 + B4 SINE B4 8 198 -94 7 1111 1280 112 11 11 chr9 69033073 69033263 -55042909 - B2_Mm2 SINE B2 -5 190 1 7 1111 395 243 2 0 chr9 69033271 69033366 -55042806 - B1F SINE Alu 0 120 25 7 1111 263 318 47 0 chr9 69033443 69033528 -55042644 - MIRm SINE MIR -122 154 66 7 1111 1309 171 8 4 chr9 69033635 69033882 -55042290 - ORR1D1 LTR MaLR 0 374 127 7 1111 6356 60 17 94 chr9 69033894 69034345 -55041827 - L1_Mus3 LINE L1 -520 6118 5708 7 1111 1071 97 0 0 chr9 69034345 69034490 -55041682 - B1_Mus1 SINE Alu -2 146 2 7 1111 6356 125 17 53 chr9 69034490 69035325 -55040847 - L1_Mus3 LINE L1 -176 5707 4864 7 1111 3884 75 9 69 chr9 69035325 69035902 -55040270 + L1_Mus3 LINE L1 6087 6628 -10 7 1111 757 139 0 0 chr9 69035919 69036041 -55040131 - ORR1D1 LTR MaLR -252 122 1 7 1111 596 287 40 7 chr9 69036041 69036190 -55039982 + B3A SINE B2 21 174 -24 7 1111 288 260 0 15 chr9 69037153 69037244 -55038928 + B4 SINE B4 8 92 -200 7 1111 257 246 29 58 chr9 69037246 69037315 -55038857 + RSINE1 SINE B4 1 67 -98 8 1111 280 228 18 0 chr9 69037493 69037550 -55038622 + RSINE1 SINE B4 108 165 0 8 1111 21 0 0 0 chr9 69037930 69037951 -55038221 + AT_rich Low_complexity Low_complexity 1 21 0 8 1111 642 116 7 35 chr9 69038057 69038200 -55037972 + CT-rich Low_complexity Low_complexity 1 139 0 8 1111 25 31 0 0 chr9 69038203 69038235 -55037937 + AT_rich Low_complexity Low_complexity 1 32 0 8 1111 359 127 0 16 chr9 69038859 69038923 -55037249 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 8 1111 237 247 48 19 chr9 69039322 69039433 -55036739 - MIRc SINE MIR -21 187 81 8 1111 261 0 0 0 chr9 69040218 69040247 -55035925 + (TGG)n Simple_repeat Simple_repeat 3 31 0 8 1111 774 271 13 60 chr9 69040292 69040524 -55035648 + B4 SINE B4 2 222 -70 8 1111 441 54 0 0 chr9 69040560 69040616 -55035556 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1111 1095 250 41 27 chr9 69043398 69043690 -55032482 - B4 SINE B4 -2 290 12 8 1111 204 167 24 0 chr9 69045204 69045246 -55030926 + (TTG)n Simple_repeat Simple_repeat 1 43 0 9 1111 758 218 113 17 chr9 69045272 69045510 -55030662 - LFSINE_Vert SINE SINE -36 423 163 9 1111 524 271 80 32 chr9 69045907 69046094 -55030078 + RMER30 DNA MER1_type 7 202 0 9 1111 198 103 0 0 chr9 69046572 69046601 -55029571 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1111 477 0 0 0 chr9 69046968 69047021 -55029151 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1111 666 279 5 39 chr9 69047681 69047886 -55028286 + B3A SINE B2 1 198 0 9 1111 797 215 38 61 chr9 69048522 69048735 -55027437 - B3 SINE B2 -7 209 2 9 1111 1574 211 39 17 chr9 69049994 69050403 -55025769 - MTD LTR MaLR 0 419 2 9 1111 1027 277 10 46 chr9 69050580 69050883 -55025289 + B4A SINE B4 1 292 0 9 1111 210 291 49 25 chr9 69051193 69051274 -55024898 - MIRb SINE MIR -143 125 43 9 1111 500 327 0 6 chr9 69051664 69051824 -55024348 - RSINE1 SINE B4 -5 160 2 1 1111 198 0 0 0 chr9 69052213 69052235 -55023937 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1111 903 246 10 0 chr9 69052433 69052628 -55023544 + B3A SINE B2 2 198 0 1 1111 513 257 0 26 chr9 69053134 69053286 -55022886 + B1F SINE Alu 1 148 -1 1 1111 905 287 63 4 chr9 69053683 69053952 -55022220 - B4 SINE B4 -7 285 1 1 1111 480 252 0 26 chr9 69055758 69055872 -55020300 + B4 SINE B4 84 194 -98 1 1111 468 0 0 0 chr9 69056713 69056765 -55019407 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 1 1111 775 203 7 13 chr9 69056765 69056915 -55019257 + B1_Mur1 SINE Alu 1 149 0 1 1111 567 195 55 122 chr9 69057681 69057862 -55018310 + B4A SINE B4 6 174 -118 1 1111 21 0 0 0 chr9 69058250 69058271 -55017901 + AT_rich Low_complexity Low_complexity 1 21 0 1 1111 245 87 14 68 chr9 69058392 69058466 -55017706 + T-rich Low_complexity Low_complexity 2 71 0 1 1111 262 293 154 63 chr9 69059674 69059849 -55016323 - LTR16A LTR ERVL -259 192 2 1 1111 450 114 0 0 chr9 69060244 69060314 -55015858 + (TCTG)n Simple_repeat Simple_repeat 2 71 0 1 1111 451 282 77 0 chr9 69060767 69060884 -55015288 - RSINE1 SINE B4 -38 127 2 1 1111 573 52 0 0 chr9 69062052 69062129 -55014043 + (TATG)n Simple_repeat Simple_repeat 4 80 0 1 1111 326 61 20 0 chr9 69062131 69062180 -55013992 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1 1111 667 197 12 93 chr9 69063090 69063252 -55012920 + B1_Mur2 SINE Alu 1 149 0 1 1111 482 204 32 11 chr9 69063354 69063377 -55012795 - PB1D7 SINE Alu 0 120 25 1 1111 229 198 80 98 chr9 69063377 69063448 -55012724 + YREP_Mm Unknown Unknown 223 292 -1520 1 1111 183 42 0 0 chr9 69063448 69063472 -55012700 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1111 229 198 80 98 chr9 69063472 69063512 -55012660 + YREP_Mm Unknown Unknown 293 332 -1480 1 1111 274 354 66 136 chr9 69063617 69063875 -55012297 - B4 SINE B4 0 292 53 1 1111 313 302 66 50 chr9 69064813 69064994 -55011178 - L1MCa LINE L1 -4549 1959 1776 1 1111 212 143 0 23 chr9 69064994 69065037 -55011135 + CT-rich Low_complexity Low_complexity 3 44 0 1 1111 21 0 0 0 chr9 69066623 69066644 -55009528 + AT_rich Low_complexity Low_complexity 1 21 0 1 1111 221 286 0 0 chr9 69066917 69066966 -55009206 + ID4_ SINE ID 12 60 -23 1 1111 507 33 0 0 chr9 69066969 69067030 -55009142 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 1 1111 666 227 55 34 chr9 69067036 69067182 -55008990 + RSINE1 SINE B4 2 150 -15 1 1111 420 20 0 0 chr9 69067190 69067239 -55008933 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1 1111 240 333 30 53 chr9 69067463 69067596 -55008576 - RMER12 LTR ERVK -444 878 749 1 1111 221 377 0 0 chr9 69068367 69068436 -55007736 - ID4 SINE ID 0 83 15 1 1111 470 313 23 15 chr9 69069026 69069159 -55007013 - B4 SINE B4 0 292 159 1 1111 695 281 209 32 chr9 69069194 69069539 -55006633 - MLT1D LTR MaLR -79 426 21 1 1111 787 226 18 14 chr9 69070616 69070783 -55005389 - B3 SINE B2 -1 197 17 1 1111 897 231 14 60 chr9 69070882 69071098 -55005074 + B4 SINE B4 1 206 -86 1 1111 886 185 7 0 chr9 69071113 69071259 -55004913 + B3 SINE B2 70 216 0 1 1111 237 270 31 16 chr9 69071289 69071353 -55004819 + B4 SINE B4 216 280 -12 1 1111 187 348 34 55 chr9 69072445 69072591 -55003581 - MIRb SINE MIR -108 160 18 1 1111 319 269 94 29 chr9 69073720 69073858 -55002314 + MIRc SINE MIR 14 160 -108 1 1111 563 147 0 10 chr9 69074112 69074215 -55001957 + CT-rich Low_complexity Low_complexity 1 102 0 1 1111 306 0 0 0 chr9 69074630 69074664 -55001508 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1112 657 0 0 0 chr9 69075480 69075553 -55000619 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1112 423 325 74 33 chr9 69076498 69076619 -54999553 + RSINE1 SINE B4 39 164 -1 1 1112 571 276 56 25 chr9 69077019 69077179 -54998993 + B4A SINE B4 121 285 -7 1 1112 327 49 0 0 chr9 69077460 69077501 -54998671 + (TCC)n Simple_repeat Simple_repeat 1 41 0 1 1112 342 220 89 43 chr9 69078469 69078611 -54997561 - MIRm SINE MIR -92 176 22 1 1112 457 238 20 10 chr9 69079083 69079185 -54996987 - B1F1 SINE Alu -37 112 10 1 1112 1053 226 43 13 chr9 69079535 69079768 -54996404 - MTD LTR MaLR 0 419 180 1 1112 503 308 126 5 chr9 69080169 69080368 -54995804 + MTEb LTR MaLR 157 379 0 1 1112 211 304 0 14 chr9 69080511 69080581 -54995591 + T-rich Low_complexity Low_complexity 3 71 0 1 1112 297 135 0 0 chr9 69081263 69081315 -54994857 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1112 772 286 39 19 chr9 69081315 69081522 -54994650 - ID_B1 SINE B4 -10 214 4 1 1112 31 0 0 0 chr9 69081548 69081579 -54994593 + AT_rich Low_complexity Low_complexity 1 31 0 1 1112 505 281 107 28 chr9 69081646 69081899 -54994273 + B4A SINE B4 4 276 -16 1 1112 542 15 15 0 chr9 69081912 69081979 -54994193 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1112 216 0 0 0 chr9 69084178 69084202 -54991970 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1112 486 198 119 0 chr9 69084204 69084305 -54991867 - RSINE1 SINE B4 -51 114 2 1 1112 371 330 109 6 chr9 69084321 69084504 -54991668 - L2 LINE L2 -615 2804 2603 1 1112 406 279 0 0 chr9 69084744 69084830 -54991342 + PB1D10 SINE Alu 32 117 0 1 1112 240 35 0 0 chr9 69085496 69085525 -54990647 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1112 297 0 0 0 chr9 69086081 69086114 -54990058 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1112 279 0 0 0 chr9 69086949 69086980 -54989192 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1112 570 209 57 57 chr9 69087499 69087656 -54988516 + RSINE1 SINE B4 2 158 -7 1 1112 525 58 0 0 chr9 69087674 69087743 -54988429 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1112 351 0 0 0 chr9 69087767 69087806 -54988366 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1 1112 328 204 152 61 chr9 69088333 69088432 -54987740 + 7SK RNA RNA 1 108 -223 1 1112 336 219 0 0 chr9 69088453 69088517 -54987655 + 7SK RNA RNA 174 237 -94 1 1112 765 217 48 48 chr9 69088686 69088875 -54987297 + B3A SINE B2 9 197 -1 1 1112 1185 73 11 11 chr9 69088892 69089071 -54987101 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1 1112 222 37 0 0 chr9 69089071 69089098 -54987074 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 1 1112 315 71 0 0 chr9 69089092 69089134 -54987038 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1112 183 80 0 0 chr9 69089147 69089172 -54987000 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1 1112 324 0 0 0 chr9 69089413 69089449 -54986723 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1112 238 200 0 52 chr9 69089456 69089514 -54986658 - RSINE1 SINE B4 -107 58 4 1 1112 963 246 71 4 chr9 69089816 69090085 -54986087 + B4 SINE B4 2 288 -4 1 1112 1000 261 71 89 chr9 69090732 69091014 -54985158 + B4 SINE B4 16 292 0 1 1112 691 161 7 7 chr9 69091051 69091189 -54984983 + GA-rich Low_complexity Low_complexity 1 138 0 1 1112 42 20 0 0 chr9 69092040 69092089 -54984083 + AT_rich Low_complexity Low_complexity 1 49 0 1 1112 1139 52 0 0 chr9 69092093 69092228 -54983944 + B1_Mus1 SINE Alu 1 135 -13 1 1112 198 71 0 0 chr9 69092228 69092256 -54983916 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1112 393 243 44 18 chr9 69092440 69092553 -54983619 - PB1D10 SINE Alu 0 117 2 1 1112 25 65 0 0 chr9 69092600 69092646 -54983526 + AT_rich Low_complexity Low_complexity 1 46 0 1 1112 579 221 177 46 chr9 69093518 69093664 -54982508 + B3A SINE B2 1 175 -23 1 1112 315 122 0 0 chr9 69093664 69093713 -54982459 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1112 360 0 0 0 chr9 69093713 69093752 -54982420 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1112 579 221 177 46 chr9 69093752 69093779 -54982393 + B3A SINE B2 176 197 -1 1 1112 746 251 85 0 chr9 69093892 69094091 -54982081 + ID_B1 SINE B4 1 216 -8 1 1112 22 56 0 0 chr9 69094388 69094424 -54981748 + AT_rich Low_complexity Low_complexity 1 36 0 1 1112 251 256 75 32 chr9 69094811 69094904 -54981268 + MER53 DNA hAT 91 187 -6 1 1112 21 0 0 0 chr9 69095581 69095602 -54980570 + GC_rich Low_complexity Low_complexity 1 21 0 1 1112 656 256 204 25 chr9 69095735 69095975 -54980197 - B4A SINE B4 -1 291 9 1 1112 275 0 29 0 chr9 69095994 69096029 -54980143 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 1 1112 402 85 0 0 chr9 69096888 69096947 -54979225 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1112 279 0 0 0 chr9 69097695 69097726 -54978446 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1112 459 0 0 0 chr9 69097726 69097776 -54978396 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1112 361 212 0 15 chr9 69098078 69098145 -54978027 + B3A SINE B2 4 69 -129 1 1112 430 180 21 14 chr9 69098149 69098290 -54977882 + CT-rich Low_complexity Low_complexity 1 142 0 1 1112 236 261 148 0 chr9 69098508 69098596 -54977576 + L1MC3 LINE L1 7717 7778 -7 1 1112 725 211 35 7 chr9 69098598 69098741 -54977431 - B1_Mur1 SINE Alu -1 148 2 1 1112 346 242 0 0 chr9 69098948 69099014 -54977158 - RMER15 LTR ERVL -105 470 405 1 1112 317 265 39 39 chr9 69099023 69099125 -54977047 - Lx8 LINE L1 -214 7259 7158 1 1112 334 333 72 34 chr9 69099190 69099426 -54976746 - L2c LINE L2 -67 3320 3076 1 1112 468 327 109 0 chr9 69099596 69099798 -54976374 - MER2 DNA MER2_type -121 224 1 1 1112 773 220 16 48 chr9 69100592 69100778 -54975394 + B3A SINE B2 3 182 -16 1 1112 180 0 0 0 chr9 69100778 69100798 -54975374 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1112 605 218 63 16 chr9 69101171 69101297 -54974875 + B3A SINE B2 1 132 -66 2 1112 288 0 0 0 chr9 69101315 69101347 -54974825 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1112 188 146 49 0 chr9 69101383 69101424 -54974748 + GA-rich Low_complexity Low_complexity 4 46 0 2 1112 307 182 26 0 chr9 69101924 69102001 -54974171 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1112 1082 271 0 4 chr9 69102008 69102249 -54973923 - B4A SINE B4 -42 250 11 2 1112 272 325 94 29 chr9 69102443 69102719 -54973453 - L1MC4a LINE L1 -1978 5904 5611 2 1112 30 0 0 0 chr9 69102788 69102818 -54973354 + AT_rich Low_complexity Low_complexity 1 30 0 2 1112 241 258 0 57 chr9 69103531 69103601 -54972571 + polypurine Low_complexity Low_complexity 3 68 0 2 1112 186 111 17 69 chr9 69103736 69103794 -54972378 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 2 1112 757 25 80 19 chr9 69103803 69103965 -54972207 + (TG)n Simple_repeat Simple_repeat 2 173 0 2 1112 789 277 53 16 chr9 69104008 69104254 -54971918 - B4A SINE B4 -36 256 2 2 1112 293 282 103 40 chr9 69104679 69104895 -54971277 + MIR SINE MIR 1 262 0 2 1112 822 282 0 0 chr9 69104961 69105131 -54971041 - B3A SINE B2 -21 177 8 2 1112 1191 266 11 15 chr9 69105618 69105881 -54970291 - B4A SINE B4 -10 282 21 2 1112 273 324 50 99 chr9 69105948 69106127 -54970045 - L1MC4 LINE L1 0 8042 7879 2 1112 222 91 0 0 chr9 69106127 69106160 -54970012 + (CG)n Simple_repeat Simple_repeat 2 34 0 2 1112 267 79 0 0 chr9 69106160 69106197 -54969975 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1112 273 324 50 99 chr9 69106197 69106338 -54969834 - L1MC4 LINE L1 -164 7878 7738 2 1112 681 255 74 15 chr9 69106698 69106901 -54969271 + ID_B1 SINE B4 1 215 -9 2 1112 258 32 0 0 chr9 69106901 69106932 -54969240 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2 1112 405 0 0 0 chr9 69106976 69107021 -54969151 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1112 467 288 55 11 chr9 69107754 69107933 -54968239 - MIR SINE MIR -34 228 42 2 1112 372 42 0 0 chr9 69108574 69108610 -54967562 + (TA)n Simple_repeat Simple_repeat 1 36 0 2 1112 387 0 0 0 chr9 69108610 69108653 -54967519 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1112 372 42 0 0 chr9 69108653 69108664 -54967508 + (TA)n Simple_repeat Simple_repeat 2 12 0 2 1112 420 20 0 0 chr9 69108861 69108910 -54967262 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1112 710 252 180 0 chr9 69108988 69109194 -54966978 - B4A SINE B4 -19 273 31 2 1112 890 184 7 0 chr9 69110086 69110233 -54965939 - B1_Mur2 SINE Alu 0 149 2 2 1112 423 56 0 40 chr9 69110486 69110560 -54965612 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1112 286 177 63 6 chr9 69110623 69110782 -54965390 + (TG)n Simple_repeat Simple_repeat 2 169 0 2 1112 611 270 107 35 chr9 69111396 69111657 -54964515 - B4A SINE B4 -12 280 1 2 1112 318 20 0 56 chr9 69112006 69112060 -54964112 + (TAA)n Simple_repeat Simple_repeat 1 51 0 2 1112 766 274 73 56 chr9 69112272 69112558 -54963614 + B4A SINE B4 2 292 0 2 1112 255 310 53 30 chr9 69114010 69114143 -54962029 - MIRb SINE MIR -130 138 3 2 1112 866 159 7 14 chr9 69114691 69114838 -54961334 + B1_Mus2 SINE Alu 2 147 0 2 1112 246 32 0 0 chr9 69114845 69114876 -54961296 + (TAA)n Simple_repeat Simple_repeat 1 31 0 2 1112 318 256 232 0 chr9 69115396 69115521 -54960651 - MIRb SINE MIR -96 172 19 2 1112 519 17 0 0 chr9 69117937 69117997 -54958175 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1112 213 205 0 0 chr9 69118019 69118058 -54958114 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1112 261 75 0 0 chr9 69118530 69118570 -54957602 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1112 694 261 136 4 chr9 69119542 69119608 -54956564 - B4A SINE B4 0 292 212 2 1112 369 0 0 0 chr9 69119608 69119649 -54956523 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1112 694 261 136 4 chr9 69119649 69119840 -54956332 - B4A SINE B4 -81 211 2 2 1112 241 243 80 13 chr9 69120397 69120472 -54955700 + MIR SINE MIR 24 103 -105 2 1112 384 305 56 62 chr9 69121619 69121780 -54954392 - Tigger15a DNA TcMar -196 519 360 2 1112 339 85 0 0 chr9 69122038 69122085 -54954087 + (TCC)n Simple_repeat Simple_repeat 3 49 0 2 1112 204 23 91 23 chr9 69122457 69122501 -54953671 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1112 596 268 6 37 chr9 69124475 69124638 -54951534 + RSINE1 SINE B4 2 159 -6 2 1112 1340 299 52 33 chr9 69125019 69125503 -54950669 - MER82 DNA MER2_type -152 501 9 2 1112 284 311 103 25 chr9 69125535 69125739 -54950433 + L1M5 LINE L1 5493 5712 -467 2 1112 327 113 0 0 chr9 69125916 69125969 -54950203 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1112 414 185 0 0 chr9 69126053 69126134 -54950038 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 2 1112 321 26 0 0 chr9 69126135 69126173 -54949999 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1112 801 260 10 44 chr9 69126173 69126378 -54949794 - B4 SINE B4 -87 205 8 2 1112 195 42 0 0 chr9 69126832 69126856 -54949316 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1112 219 286 0 0 chr9 69128203 69128266 -54947906 + MIRm SINE MIR 96 158 -118 2 1112 690 244 22 38 chr9 69128449 69128632 -54947540 + B4A SINE B4 107 286 -6 2 1112 225 226 0 0 chr9 69128643 69128696 -54947476 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1112 544 300 21 0 chr9 69129806 69129946 -54946226 - ID_B1 SINE B4 -7 217 75 2 1112 193 233 23 0 chr9 69130206 69130249 -54945923 + L2b LINE L2 3113 3156 -219 2 1112 620 255 23 55 chr9 69130305 69130525 -54945647 - B3 SINE B2 0 216 4 2 1112 366 91 0 0 chr9 69130863 69130918 -54945254 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1112 896 283 116 4 chr9 69130933 69131192 -54944980 - B4A SINE B4 -4 288 1 2 1112 297 128 0 0 chr9 69131689 69131736 -54944436 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1112 228 315 132 47 chr9 69132123 69132313 -54943859 - MIRb SINE MIR -34 234 29 2 1112 261 159 0 0 chr9 69132590 69132653 -54943519 + GA-rich Low_complexity Low_complexity 2 64 0 2 1112 270 0 0 0 chr9 69133401 69133431 -54942741 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1112 451 338 117 18 chr9 69134417 69134691 -54941481 - Lx8 LINE L1 -294 7179 6879 2 1112 333 0 0 0 chr9 69136276 69136313 -54939859 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1112 180 0 0 0 chr9 69136313 69136333 -54939839 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1112 447 19 0 0 chr9 69139928 69139980 -54936192 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1112 23 0 0 0 chr9 69140526 69140549 -54935623 + AT_rich Low_complexity Low_complexity 1 23 0 2 1112 342 0 0 0 chr9 69141263 69141301 -54934871 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1112 654 237 7 0 chr9 69141302 69141437 -54934735 + RSINE1 SINE B4 28 163 -2 2 1112 200 211 0 0 chr9 69141931 69141969 -54934203 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 2 1112 245 217 0 32 chr9 69143665 69143727 -54932445 - L3 LINE CR1 -115 4374 4315 2 1112 273 29 0 0 chr9 69143862 69143896 -54932276 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1112 225 0 0 0 chr9 69144079 69144104 -54932068 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 2 1112 308 23 45 0 chr9 69144316 69144360 -54931812 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1112 216 0 0 0 chr9 69144831 69144855 -54931317 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1112 553 252 82 6 chr9 69145039 69145209 -54930963 + ID_B1 SINE B4 3 172 -120 2 1112 21 0 0 0 chr9 69145846 69145867 -54930305 + AT_rich Low_complexity Low_complexity 1 21 0 2 1112 23 33 0 0 chr9 69147193 69147223 -54928949 + AT_rich Low_complexity Low_complexity 1 30 0 2 1112 217 299 276 0 chr9 69147886 69148020 -54928152 + B3A SINE B2 1 171 -27 2 1112 414 39 0 0 chr9 69148024 69148076 -54928096 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1112 207 0 0 0 chr9 69148987 69149010 -54927162 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1112 578 14 14 0 chr9 69150270 69150341 -54925831 + (TCC)n Simple_repeat Simple_repeat 2 73 0 2 1112 276 30 0 0 chr9 69150410 69150443 -54925729 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1112 234 0 0 0 chr9 69150443 69150468 -54925704 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1112 441 0 0 0 chr9 69151245 69151294 -54924878 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1112 730 326 65 98 chr9 69151646 69151895 -54924277 + Charlie1a DNA MER1_type 137 341 -1114 2 1112 368 297 49 35 chr9 69151895 69152038 -54924134 - RSINE1 SINE B4 -18 147 3 2 1112 730 326 65 98 chr9 69152038 69152634 -54923538 + Charlie1a DNA MER1_type 342 954 -501 2 1112 401 202 46 37 chr9 69152647 69152755 -54923417 + PB1D7 SINE Alu 11 119 -1 2 1112 32 0 0 0 chr9 69152763 69152795 -54923377 + AT_rich Low_complexity Low_complexity 1 32 0 2 1112 573 264 48 44 chr9 69152862 69153068 -54923104 + ID_B1 SINE B4 1 207 -17 2 1112 747 119 0 0 chr9 69153092 69153218 -54922954 + (GA)n Simple_repeat Simple_repeat 1 126 0 2 1112 240 270 90 0 chr9 69153218 69153318 -54922854 + Charlie1a DNA MER1_type 1018 1126 -329 2 1112 202 0 29 57 chr9 69153385 69153420 -54922752 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2 1112 189 0 0 0 chr9 69153572 69153593 -54922579 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 2 1112 760 155 78 0 chr9 69153593 69153722 -54922450 - B1_Mus1 SINE Alu -9 139 1 2 1112 535 216 112 0 chr9 69155037 69155171 -54921001 + B3A SINE B2 7 155 -43 2 1112 432 0 0 0 chr9 69155189 69155237 -54920935 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1112 333 0 0 0 chr9 69155237 69155273 -54920899 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1112 180 0 0 0 chr9 69155396 69155416 -54920756 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1112 198 0 0 0 chr9 69155421 69155443 -54920729 + (TGAA)n Simple_repeat Simple_repeat 4 25 0 3 1112 1128 61 0 0 chr9 69155443 69155591 -54920581 - B2_Mm2 SINE B2 -46 149 2 3 1112 387 241 6 171 chr9 69155838 69156013 -54920159 - RSINE1 SINE B4 -15 150 5 3 1112 947 274 52 25 chr9 69156150 69156475 -54919697 - Lx8 LINE L1 0 7473 7140 3 1112 387 0 0 0 chr9 69156758 69156801 -54919371 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1112 637 231 8 30 chr9 69157018 69157152 -54919020 + RSINE1 SINE B4 6 136 -29 3 1112 360 0 0 0 chr9 69157154 69157194 -54918978 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1112 21 0 0 0 chr9 69157213 69157234 -54918938 + AT_rich Low_complexity Low_complexity 1 21 0 3 1112 396 0 0 0 chr9 69157606 69157650 -54918522 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1112 204 40 0 0 chr9 69159057 69159082 -54917090 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1112 880 271 85 15 chr9 69159084 69159343 -54916829 - B4A SINE B4 -14 278 2 3 1112 272 245 32 11 chr9 69160536 69160631 -54915541 + (TATATG)n Simple_repeat Simple_repeat 3 99 0 3 1112 231 185 0 4 chr9 69160631 69160681 -54915491 - B3A SINE B2 -167 49 1 3 1112 319 336 26 2 chr9 69161161 69161325 -54914847 - MIRc SINE MIR -33 175 11 3 1112 441 281 65 7 chr9 69163304 69163458 -54912714 + MER20 DNA MER1_type 55 217 -2 3 1112 343 330 28 0 chr9 69163561 69163670 -54912502 + PB1D10 SINE Alu 1 112 -5 3 1112 328 231 13 0 chr9 69163675 69163753 -54912419 + ID4 SINE ID 3 81 -2 3 1112 790 320 24 14 chr9 69163785 69163991 -54912181 - B4 SINE B4 -1 291 88 3 1112 234 62 0 0 chr9 69163991 69164023 -54912149 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 1112 790 320 24 14 chr9 69164023 69164104 -54912068 - B4 SINE B4 -205 87 3 3 1112 824 206 58 6 chr9 69167152 69167308 -54908864 + RSINE1 SINE B4 2 165 0 3 1112 213 286 73 37 chr9 69167502 69167611 -54908561 - MIRm SINE MIR -105 171 59 3 1112 181 333 0 0 chr9 69168060 69168111 -54908061 - MIRb SINE MIR -97 171 121 3 1112 33 25 0 0 chr9 69168822 69168862 -54907310 + AT_rich Low_complexity Low_complexity 1 40 0 3 1112 311 185 11 0 chr9 69168893 69168985 -54907187 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1112 211 240 0 20 chr9 69169746 69169797 -54906375 + A-rich Low_complexity Low_complexity 3 52 0 3 1112 854 239 38 38 chr9 69169925 69170134 -54906038 + B3 SINE B2 8 216 0 3 1112 374 319 68 68 chr9 69170327 69170549 -54905623 + Tigger15a DNA TcMar 30 251 -464 3 1112 26 0 0 0 chr9 69170605 69170631 -54905541 + AT_rich Low_complexity Low_complexity 1 26 0 3 1112 545 277 44 6 chr9 69170903 69171063 -54905109 + ID_B1 SINE B4 43 208 -16 3 1112 290 254 0 0 chr9 69171379 69171442 -54904730 - ID_B1 SINE B4 -20 204 142 3 1112 450 0 0 0 chr9 69172524 69172574 -54903598 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1112 777 241 14 0 chr9 69172584 69172729 -54903443 - RSINE1 SINE B4 -18 147 1 3 1112 381 218 25 13 chr9 69172788 69172867 -54903305 + B4A SINE B4 2 81 -211 3 1112 330 26 0 0 chr9 69172874 69172913 -54903259 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1112 315 0 0 0 chr9 69172916 69172951 -54903221 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1112 869 222 0 0 chr9 69174202 69174355 -54901817 + ID_B1 SINE B4 1 153 -71 3 1112 544 281 48 54 chr9 69174358 69174505 -54901667 + RSINE1 SINE B4 3 148 -17 3 1112 22 0 0 0 chr9 69174516 69174538 -54901634 + AT_rich Low_complexity Low_complexity 1 22 0 3 1112 273 311 0 0 chr9 69174538 69174612 -54901560 + ID_B1 SINE B4 145 218 -6 3 1112 738 289 70 146 chr9 69175433 69176049 -54900123 - MER34A LTR ERV1 -2 569 1 3 1112 209 300 17 0 chr9 69176051 69176111 -54900061 - MIR SINE MIR -129 79 19 3 1112 251 167 33 0 chr9 69176120 69176180 -54899992 + CT-rich Low_complexity Low_complexity 2 63 0 3 1112 215 238 0 0 chr9 69176180 69176222 -54899950 + (CATA)n Simple_repeat Simple_repeat 4 45 0 3 1112 592 275 5 40 chr9 69176778 69176974 -54899198 - B3A SINE B2 -9 186 7 3 1112 759 294 85 12 chr9 69177024 69177272 -54898900 - B4A SINE B4 0 292 27 3 1112 228 312 65 0 chr9 69177540 69177633 -54898539 - L2a LINE L2 -24 3402 3304 3 1112 234 0 0 0 chr9 69178289 69178315 -54897857 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1112 441 273 81 43 chr9 69178342 69178500 -54897672 - B4A SINE B4 -22 270 107 3 1112 1543 130 4 26 chr9 69178500 69178788 -54897384 - MTC LTR MaLR 0 421 137 3 1112 789 99 0 0 chr9 69179064 69179185 -54896987 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 1112 504 311 63 47 chr9 69179688 69179941 -54896231 - MARNA DNA Mariner -23 563 307 3 1112 452 294 52 0 chr9 69180714 69180850 -54895322 + B1F SINE Alu 1 143 -6 3 1112 537 296 110 26 chr9 69181654 69181845 -54894327 + ID_B1 SINE B4 2 208 -16 3 1112 287 347 35 45 chr9 69182473 69182672 -54893500 - MARNA DNA Mariner -15 571 375 3 1112 913 251 52 52 chr9 69183198 69183484 -54892688 + B4 SINE B4 3 288 -4 3 1112 1111 70 35 0 chr9 69183485 69183627 -54892545 + B1_Mus1 SINE Alu 2 148 0 3 1112 231 173 0 0 chr9 69183627 69183679 -54892493 + A-rich Low_complexity Low_complexity 1 52 0 3 1112 216 0 0 0 chr9 69184775 69184799 -54891373 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1112 776 234 88 44 chr9 69185291 69185564 -54890608 + B4A SINE B4 7 291 -1 3 1112 784 159 7 28 chr9 69186091 69186233 -54889939 + B1_Mur1 SINE Alu 6 144 -5 3 1112 246 192 0 0 chr9 69186233 69186285 -54889887 + GA-rich Low_complexity Low_complexity 1 52 0 3 1112 1118 184 40 54 chr9 69186435 69186659 -54889513 - ID_B1 SINE B4 -2 222 2 3 1112 183 100 0 0 chr9 69186725 69186755 -54889417 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1112 198 0 0 0 chr9 69188205 69188227 -54887945 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1112 256 324 0 40 chr9 69189194 69189268 -54886904 + ID4 SINE ID 2 72 -11 3 1112 432 0 0 0 chr9 69189268 69189316 -54886856 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1112 342 67 0 0 chr9 69190105 69190150 -54886022 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1112 331 227 13 0 chr9 69191270 69191345 -54884827 - L1ME4a LINE L1 -4 6120 6045 3 1112 670 292 116 41 chr9 69191629 69191897 -54884275 + B4A SINE B4 1 288 -4 3 1112 527 297 48 0 chr9 69192661 69192806 -54883366 - RSINE1 SINE B4 -12 153 2 3 1112 239 125 0 0 chr9 69194059 69194099 -54882073 + B3A SINE B2 2 41 -157 3 1112 1258 48 0 0 chr9 69194101 69194247 -54881925 + B1_Mus2 SINE Alu 2 147 0 3 1112 222 116 0 0 chr9 69194250 69194293 -54881879 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1112 469 233 113 27 chr9 69194293 69194443 -54881729 + B3A SINE B2 27 189 -9 3 1112 195 162 0 0 chr9 69194700 69194737 -54881435 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1112 493 249 89 96 chr9 69196269 69196562 -54879610 + B4A SINE B4 2 292 0 3 1112 738 211 45 0 chr9 69197410 69197543 -54878629 - RSINE1 SINE B4 -23 142 4 3 1112 701 313 42 54 chr9 69197776 69198036 -54878136 + B4A SINE B4 1 257 -35 3 1112 1272 184 158 64 chr9 69198944 69199286 -54876886 - ORR1D1 LTR MaLR 0 374 1 3 1112 588 279 114 13 chr9 69200523 69200672 -54875500 - B3A SINE B2 -29 169 6 3 1112 347 214 139 41 chr9 69202825 69202892 -54873280 + B4 SINE B4 146 221 -71 3 1112 261 75 0 0 chr9 69202892 69202932 -54873240 + (CAGG)n Simple_repeat Simple_repeat 1 40 0 3 1112 347 214 139 41 chr9 69202932 69202986 -54873186 + B4 SINE B4 222 279 -13 3 1112 711 309 92 48 chr9 69203570 69203927 -54872245 - MER63C DNA AcHobo -239 691 319 3 1112 198 220 0 0 chr9 69204174 69204233 -54871939 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1112 617 239 50 72 chr9 69204326 69204506 -54871666 + B3A SINE B2 9 184 -14 3 1112 292 186 77 55 chr9 69204515 69204606 -54871566 - Lx9 LINE L1 0 7644 7552 3 1112 842 232 154 4 chr9 69204703 69204950 -54871222 - Lx9 LINE L1 -95 7549 7266 3 1112 3915 54 10 14 chr9 69204950 69205455 -54870717 - L1Md_F2 LINE L1 -1 6581 6079 3 1112 247 0 0 0 chr9 69205548 69205576 -54870596 - L1Md_F2 LINE L1 -505 6077 6050 3 1112 322 127 54 18 chr9 69205575 69205631 -54870541 - Lx9 LINE L1 -374 7270 7213 3 1113 608 222 137 38 chr9 69206275 69206458 -54869714 + B4A SINE B4 1 201 -91 3 1113 27 0 0 0 chr9 69207298 69207325 -54868847 + AT_rich Low_complexity Low_complexity 1 27 0 3 1113 432 0 0 0 chr9 69208314 69208362 -54867810 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1113 635 272 157 20 chr9 69208888 69209136 -54867036 + B4A SINE B4 11 292 0 3 1113 314 301 37 46 chr9 69211260 69211368 -54864804 + PB1 SINE Alu 21 127 0 3 1113 500 210 60 0 chr9 69211624 69211724 -54864448 + PB1D10 SINE Alu 11 116 -1 3 1113 202 213 0 0 chr9 69212027 69212074 -54864098 + (CAG)n Simple_repeat Simple_repeat 3 49 0 3 1113 535 310 18 18 chr9 69212731 69212951 -54863221 - L1MA6 LINE L1 0 6300 6081 3 1113 207 0 0 0 chr9 69214596 69214619 -54861553 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1113 270 0 0 0 chr9 69214619 69214648 -54861524 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1113 354 79 195 13 chr9 69214656 69214733 -54861439 - Lx4B LINE L1 -31 7027 6937 3 1113 187 268 0 51 chr9 69215343 69215402 -54860770 + MIR3 SINE MIR 132 187 -21 3 1113 261 298 40 69 chr9 69215462 69215563 -54860609 + RMER30 DNA MER1_type 105 202 0 3 1113 1185 68 0 0 chr9 69215817 69215963 -54860209 + B1_Mus1 SINE Alu 2 147 -1 4 1113 324 300 0 0 chr9 69216165 69216245 -54859927 - ID4_ SINE ID -2 81 2 4 1113 588 239 69 0 chr9 69216254 69216384 -54859788 - B1F2 SINE Alu -9 140 2 4 1113 399 287 58 22 chr9 69217014 69217153 -54859019 - B1F2 SINE Alu -5 144 1 4 1113 507 329 92 0 chr9 69217788 69217995 -54858177 - MIR SINE MIR -8 254 29 4 1113 228 35 0 0 chr9 69217997 69218026 -54858146 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1113 376 208 13 25 chr9 69218135 69218214 -54857958 + B4 SINE B4 4 81 -211 4 1113 218 222 0 0 chr9 69218219 69218240 -54857932 + polypurine Low_complexity Low_complexity 3 23 0 4 1113 726 12 0 0 chr9 69218240 69218323 -54857849 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 4 1113 218 222 0 0 chr9 69218323 69218346 -54857826 + polypurine Low_complexity Low_complexity 24 46 0 4 1113 248 70 0 23 chr9 69218346 69218390 -54857782 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 4 1113 382 232 18 150 chr9 69218402 69218569 -54857603 + B4A SINE B4 109 253 -39 4 1113 648 215 45 30 chr9 69219538 69219672 -54856500 + B3A SINE B2 1 136 -62 4 1113 495 0 0 0 chr9 69219672 69219727 -54856445 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1113 961 202 20 20 chr9 69221209 69221406 -54854766 + B3 SINE B2 4 200 -16 4 1113 186 43 0 0 chr9 69221420 69221443 -54854729 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1113 338 281 147 28 chr9 69222688 69222831 -54853341 + MIRb SINE MIR 27 186 -82 4 1113 284 167 194 0 chr9 69223499 69223571 -54852601 + B4A SINE B4 1 86 -206 4 1113 702 150 0 0 chr9 69223573 69223693 -54852479 + (GGAA)n Simple_repeat Simple_repeat 3 122 0 4 1113 595 175 0 10 chr9 69223728 69223832 -54852340 + B4A SINE B4 186 288 -4 4 1113 834 274 6 0 chr9 69224944 69225108 -54851064 - B3A SINE B2 -31 167 3 4 1113 201 171 0 0 chr9 69225119 69225154 -54851018 + T-rich Low_complexity Low_complexity 1 35 0 4 1113 539 273 65 20 chr9 69225898 69226035 -54850137 + RSINE1 SINE B4 6 149 -16 4 1113 561 99 0 0 chr9 69226035 69226116 -54850056 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1113 539 273 65 20 chr9 69226116 69226131 -54850041 + RSINE1 SINE B4 150 164 -1 4 1113 22 35 0 0 chr9 69227383 69227412 -54848760 + AT_rich Low_complexity Low_complexity 1 29 0 4 1113 255 114 0 0 chr9 69227595 69227639 -54848533 + (A)n Simple_repeat Simple_repeat 1 44 0 4 1113 21 0 0 0 chr9 69228297 69228318 -54847854 + AT_rich Low_complexity Low_complexity 1 21 0 4 1113 446 315 13 20 chr9 69228458 69228607 -54847565 + B3A SINE B2 1 148 -50 4 1113 279 0 0 0 chr9 69228607 69228638 -54847534 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1113 207 69 0 0 chr9 69231199 69231228 -54844944 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 1113 525 104 0 0 chr9 69232564 69232641 -54843531 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1113 297 89 0 0 chr9 69234160 69234205 -54841967 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1113 213 237 85 0 chr9 69236142 69236201 -54839971 + MER5A1 DNA MER1_type 9 67 -99 4 1113 430 181 23 57 chr9 69236209 69236297 -54839875 + BC1_Mm scRNA scRNA 1 85 -67 4 1113 219 211 0 0 chr9 69236297 69236335 -54839837 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1113 868 259 36 5 chr9 69236341 69236535 -54839637 + B3 SINE B2 9 208 -8 4 1113 320 217 64 21 chr9 69236602 69236696 -54839476 + MER5A1 DNA MER1_type 69 166 0 4 1113 1759 176 39 54 chr9 69236801 69237191 -54838981 - ORR1C2 LTR MaLR 0 384 1 4 1113 306 73 0 0 chr9 69237346 69237387 -54838785 + (CCCCCA)n Simple_repeat Simple_repeat 1 41 0 4 1113 399 89 0 0 chr9 69237512 69237568 -54838604 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1113 887 251 84 18 chr9 69237568 69237795 -54838377 - B4 SINE B4 -50 242 1 4 1113 276 274 128 48 chr9 69238761 69239010 -54837162 + L1MA6 LINE L1 6015 6283 -17 4 1113 298 308 85 23 chr9 69240524 69240877 -54835295 + L1MB7 LINE L1 5626 6001 -183 4 1113 534 246 100 0 chr9 69242492 69242622 -54833550 + B1F1 SINE Alu 7 149 0 4 1113 966 135 0 0 chr9 69242645 69242823 -54833349 + (CAGG)n Simple_repeat Simple_repeat 2 179 0 4 1113 180 273 100 57 chr9 69243040 69243110 -54833062 - L2 LINE L2 -898 2521 2449 4 1113 23 0 0 0 chr9 69243150 69243173 -54832999 + AT_rich Low_complexity Low_complexity 1 23 0 4 1113 719 233 89 58 chr9 69243183 69243336 -54832836 + B3A SINE B2 2 162 -36 4 1113 213 39 0 0 chr9 69243336 69243362 -54832810 + (CATA)n Simple_repeat Simple_repeat 4 29 0 4 1113 719 233 89 58 chr9 69243362 69243399 -54832773 + B3A SINE B2 163 198 0 4 1113 651 192 235 18 chr9 69243413 69243583 -54832589 + B3 SINE B2 3 209 -7 4 1113 26 0 0 0 chr9 69243597 69243623 -54832549 + AT_rich Low_complexity Low_complexity 1 26 0 4 1113 833 302 63 55 chr9 69243627 69243991 -54832181 + L1M2 LINE L1 1945 2310 -4539 4 1113 269 268 28 0 chr9 69243991 69244062 -54832110 + ID4_ SINE ID 5 77 -6 4 1113 833 302 63 55 chr9 69244062 69244391 -54831781 + L1M2 LINE L1 2311 2644 -4205 4 1113 272 94 19 0 chr9 69244506 69244559 -54831613 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 4 1113 1194 50 0 0 chr9 69244559 69244699 -54831473 - B1_Mus2 SINE Alu -7 140 1 4 1113 669 235 9 88 chr9 69244751 69244966 -54831206 - B3A SINE B2 0 198 1 4 1113 706 262 28 42 chr9 69245336 69245551 -54830621 + ID_B1 SINE B4 1 212 -12 4 1113 189 0 0 0 chr9 69245553 69245574 -54830598 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 4 1113 1088 38 185 0 chr9 69247059 69247216 -54828956 - B2_Mm2 SINE B2 -9 186 1 4 1113 598 205 24 0 chr9 69247419 69247546 -54828626 - B1_Mur1 SINE Alu -18 131 2 4 1113 329 105 35 11 chr9 69249587 69249674 -54826498 + (TTTG)n Simple_repeat Simple_repeat 2 90 0 4 1113 7133 53 0 31 chr9 69250038 69250659 -54825513 - L1Md_F2 LINE L1 -12 6570 5979 4 1113 1556 57 0 0 chr9 69250659 69250851 -54825321 - B2_Mm1t SINE B2 0 193 2 4 1113 7133 53 0 31 chr9 69250851 69251203 -54824969 - L1Md_F2 LINE L1 -604 5978 5627 4 1113 247 298 0 0 chr9 69251204 69251288 -54824884 - L1M1 LINE L1 -427 5873 5790 4 1113 351 305 84 8 chr9 69251350 69251469 -54824703 - B1_Mur1 SINE Alu -21 128 1 4 1113 234 0 0 0 chr9 69251559 69251585 -54824587 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1113 225 0 0 0 chr9 69251619 69251644 -54824528 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1113 24 53 0 0 chr9 69253122 69253160 -54823012 + AT_rich Low_complexity Low_complexity 1 38 0 4 1113 225 0 0 0 chr9 69254456 69254481 -54821691 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1113 1190 68 0 0 chr9 69254481 69254628 -54821544 - B1_Mus1 SINE Alu 0 148 2 4 1113 253 281 31 0 chr9 69255836 69255900 -54820272 - ID4_ SINE ID -13 70 5 4 1113 384 389 20 0 chr9 69256413 69256562 -54819610 - Tigger7 DNA MER2_type -2321 170 19 4 1113 398 261 15 105 chr9 69256691 69256824 -54819348 + RSINE1 SINE B4 3 123 -42 4 1113 188 157 39 0 chr9 69256851 69256902 -54819270 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 4 1113 748 203 7 59 chr9 69257044 69257196 -54818976 + B1_Mur1 SINE Alu 6 149 0 4 1113 370 211 48 95 chr9 69257432 69257558 -54818614 - PB1D7 SINE Alu 0 120 1 4 1113 25 0 0 0 chr9 69257655 69257680 -54818492 + AT_rich Low_complexity Low_complexity 1 25 0 4 1113 1107 63 7 0 chr9 69258794 69258936 -54817236 + B1_Mus2 SINE Alu 5 147 0 4 1113 743 241 59 0 chr9 69260403 69260573 -54815599 - B3A SINE B2 -18 180 1 4 1113 384 261 17 9 chr9 69260592 69260708 -54815464 + L1MA6 LINE L1 5318 5434 -863 4 1113 1152 243 24 47 chr9 69260711 69261009 -54815163 + B4A SINE B4 1 291 -1 4 1113 1135 274 96 37 chr9 69261194 69261758 -54814414 + L1MA6 LINE L1 5538 6134 -157 4 1113 1023 300 14 41 chr9 69262756 69263048 -54813124 - B4A SINE B4 -3 289 6 4 1113 481 282 64 51 chr9 69265584 69265741 -54810431 - RSINE1 SINE B4 -4 161 3 4 1113 884 230 66 10 chr9 69265783 69265981 -54810191 - B3 SINE B2 -1 215 7 4 1113 459 0 0 0 chr9 69265985 69266036 -54810136 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1113 599 154 41 33 chr9 69266775 69266896 -54809276 + B1F SINE Alu 27 148 -1 4 1113 194 125 21 0 chr9 69266897 69266945 -54809227 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 4 1113 477 0 0 0 chr9 69267603 69267656 -54808516 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 4 1113 243 0 0 0 chr9 69267672 69267699 -54808473 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1113 389 307 86 73 chr9 69267881 69268032 -54808140 - RSINE1 SINE B4 0 165 13 4 1113 391 194 0 65 chr9 69268627 69268704 -54807468 + ID4 SINE ID 3 74 -9 4 1113 256 274 100 67 chr9 69270366 69270456 -54805716 - B1F1 SINE Alu -56 93 1 4 1113 225 283 78 78 chr9 69270456 69270487 -54805685 - B4A SINE B4 -201 91 61 4 1113 361 308 77 0 chr9 69270473 69270577 -54805595 - MER5A DNA MER1_type -75 114 3 4 1113 2126 267 142 14 chr9 69270793 69271695 -54804477 + Tigger6a DNA MER2_type 1 1076 -7 4 1113 225 397 52 22 chr9 69271802 69271936 -54804236 + Charlie17a DNA MER1_type 80 217 -2 4 1113 610 133 333 27 chr9 69272540 69272687 -54803485 - B2_Mm2 SINE B2 -3 192 1 4 1113 236 235 127 91 chr9 69273941 69274138 -54802034 - MIRc SINE MIR -31 237 34 4 1113 183 42 0 0 chr9 69274912 69274936 -54801236 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 1113 245 292 140 9 chr9 69275689 69275803 -54800369 + L2c LINE L2 3258 3386 -1 4 1113 192 252 87 48 chr9 69276495 69276599 -54799573 - L4 LINE RTE -2 2027 1920 4 1113 772 123 9 0 chr9 69277649 69277763 -54798409 - B1_Mur4 SINE Alu 0 150 36 4 1113 224 292 17 69 chr9 69279362 69279535 -54796637 + CT-rich Low_complexity Low_complexity 2 165 0 4 1113 834 214 40 11 chr9 69281028 69281203 -54794969 + B3 SINE B2 28 207 -9 5 1113 1299 103 16 21 chr9 69281226 69281414 -54794758 + B2_Mm2 SINE B2 2 188 -7 5 1113 513 121 63 42 chr9 69281531 69281626 -54794546 - PB1D9 SINE Alu 0 120 24 5 1113 1374 70 5 26 chr9 69281638 69281829 -54794343 + B2_Mm1a SINE B2 1 187 -6 5 1113 1178 115 0 0 chr9 69281846 69282011 -54794161 - B2_Mm2 SINE B2 -30 165 1 5 1113 216 0 0 0 chr9 69282428 69282452 -54793720 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5 1113 270 0 0 0 chr9 69282769 69282799 -54793373 + (TATAG)n Simple_repeat Simple_repeat 5 34 0 5 1113 267 211 123 27 chr9 69282973 69283046 -54793126 + ID2 SINE ID 3 82 -1 5 1113 435 211 2 0 chr9 69283761 69283837 -54792335 - Lx7 LINE L1 -805 6668 6586 5 1113 544 263 134 20 chr9 69284152 69284458 -54791714 + L1MC4 LINE L1 6855 7195 -847 5 1113 478 297 126 82 chr9 69285174 69285588 -54790584 + L1MC4 LINE L1 7244 7675 -367 5 1113 261 289 78 13 chr9 69286168 69286245 -54789927 + B1F SINE Alu 68 149 0 5 1113 243 329 128 23 chr9 69286661 69286919 -54789253 + L1MA6 LINE L1 6013 6297 -3 5 1113 766 244 33 43 chr9 69287069 69287279 -54788893 + B3 SINE B2 8 215 -1 5 1113 1060 66 73 0 chr9 69287283 69287420 -54788752 + B1_Mm SINE Alu 1 147 0 5 1113 270 81 0 0 chr9 69287420 69287457 -54788715 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1113 496 167 17 0 chr9 69288118 69288238 -54787934 + (TG)n Simple_repeat Simple_repeat 1 122 0 5 1113 805 247 103 30 chr9 69288238 69288509 -54787663 - B4A SINE B4 0 292 2 5 1113 808 218 149 0 chr9 69289482 69289670 -54786502 + B3 SINE B2 1 216 0 5 1113 572 271 194 0 chr9 69289692 69289862 -54786310 + ID_B1 SINE B4 2 204 -20 5 1113 246 196 20 0 chr9 69290282 69290333 -54785839 + MARNA DNA Mariner 280 331 -255 5 1113 24 32 0 0 chr9 69290914 69290945 -54785227 + AT_rich Low_complexity Low_complexity 1 31 0 5 1113 411 189 0 0 chr9 69290964 69291086 -54785086 + CT-rich Low_complexity Low_complexity 1 122 0 5 1113 184 281 133 11 chr9 69291175 69291265 -54784907 - MIR3 SINE MIR -8 200 100 5 1113 189 0 0 0 chr9 69291270 69291291 -54784881 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1113 709 239 0 0 chr9 69292297 69292427 -54783745 + B1_Mur2 SINE Alu 6 135 -14 5 1113 285 167 0 0 chr9 69292427 69292481 -54783691 + (ATG)n Simple_repeat Simple_repeat 2 55 0 5 1113 254 309 19 105 chr9 69292582 69292687 -54783485 - MER2 DNA MER2_type 0 345 250 5 1113 235 309 0 14 chr9 69293988 69294057 -54782115 - RMER30 DNA MER1_type 0 202 135 5 1113 227 167 0 0 chr9 69294073 69294109 -54782063 - RMER30 DNA MER1_type -165 37 2 5 1113 513 303 141 0 chr9 69294109 69294292 -54781880 - MER2 DNA MER2_type -131 214 6 5 1113 349 290 75 0 chr9 69295115 69295208 -54780964 + ID_B1 SINE B4 39 138 -86 5 1113 252 213 173 0 chr9 69295172 69295247 -54780925 + PB1D10 SINE Alu 22 109 -8 5 1113 955 222 15 20 chr9 69295260 69295462 -54780710 + B3 SINE B2 2 202 -14 5 1113 21 0 0 0 chr9 69295709 69295730 -54780442 + AT_rich Low_complexity Low_complexity 1 21 0 5 1113 583 240 16 48 chr9 69295842 69296030 -54780142 - B3A SINE B2 -16 182 1 5 1113 346 254 0 0 chr9 69296281 69296344 -54779828 + ID4 SINE ID 14 76 -7 5 1113 1045 184 95 20 chr9 69296390 69296590 -54779582 + B3 SINE B2 2 216 0 5 1113 875 275 9 0 chr9 69296757 69296975 -54779197 + ID_B1 SINE B4 2 221 -3 5 1113 189 250 75 19 chr9 69297017 69297070 -54779102 - L2 LINE L2 -609 2810 2755 5 1113 723 201 0 0 chr9 69297443 69297622 -54778550 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1113 274 204 11 11 chr9 69297639 69297733 -54778439 + (TG)n Simple_repeat Simple_repeat 2 95 0 5 1113 318 26 0 0 chr9 69297735 69297773 -54778399 - HAL1-3A_ME LINE L1 -847 2011 1974 5 1113 606 313 53 24 chr9 69297774 69297980 -54778192 - B4 SINE B4 0 292 81 5 1113 2419 143 55 71 chr9 69298864 69299317 -54776855 - RMER1B Other Other 0 1066 621 5 1113 277 247 55 22 chr9 69299329 69299420 -54776752 - B4 SINE B4 -196 96 3 5 1113 466 211 0 92 chr9 69300264 69300384 -54775788 + B4 SINE B4 152 260 -32 5 1113 333 219 41 132 chr9 69300516 69300533 -54775639 + MT2B LTR ERVL 153 158 -443 5 1113 667 174 104 22 chr9 69300533 69300658 -54775514 + B1_Mus1 SINE Alu 3 138 -10 5 1113 266 0 0 29 chr9 69300658 69300693 -54775479 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1113 339 293 61 0 chr9 69302503 69302585 -54773587 + B1F1 SINE Alu 13 99 -50 5 1113 226 295 44 33 chr9 69302513 69302604 -54773568 - YREP_Mm Unknown Unknown -1518 294 203 5 1113 264 56 0 0 chr9 69302617 69302641 -54773531 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1113 405 0 0 0 chr9 69302641 69302686 -54773486 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1113 264 56 0 0 chr9 69302686 69302697 -54773475 + (A)n Simple_repeat Simple_repeat 1 11 0 5 1113 258 258 15 0 chr9 69303937 69304003 -54772169 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1113 583 188 296 12 chr9 69305364 69305536 -54770636 + ID_B1 SINE B4 3 223 -1 5 1113 204 67 0 0 chr9 69306414 69306444 -54769728 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1113 616 219 55 0 chr9 69307262 69307390 -54768782 - ID_B1 SINE B4 -10 214 80 5 1113 746 320 5 88 chr9 69307852 69308263 -54767909 - MTEa LTR MaLR -2 377 1 5 1113 607 276 31 31 chr9 69308798 69308989 -54767183 - B4A SINE B4 -101 191 1 5 1113 1466 69 5 0 chr9 69309205 69309393 -54766779 - B2_Mm1a SINE B2 0 193 5 5 1113 637 310 19 6 chr9 69309911 69310070 -54766102 + RSINE1 SINE B4 3 163 -2 5 1113 718 224 34 15 chr9 69310109 69310318 -54765854 + B3A SINE B2 6 214 -2 5 1113 499 277 48 62 chr9 69310329 69310537 -54765635 - L1MC2 LINE L1 -376 5968 5764 5 1113 328 179 26 0 chr9 69310628 69310706 -54765466 + GA-rich Low_complexity Low_complexity 2 81 0 5 1113 36 40 0 0 chr9 69310831 69310881 -54765291 + AT_rich Low_complexity Low_complexity 1 50 0 5 1113 607 269 183 25 chr9 69311336 69311576 -54764596 - B4 SINE B4 -14 278 1 5 1113 1260 48 0 0 chr9 69311755 69311902 -54764270 - B1_Mus2 SINE Alu 0 147 1 5 1113 279 0 0 0 chr9 69312205 69312236 -54763936 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1113 210 37 0 0 chr9 69312744 69312771 -54763401 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 1113 592 259 62 19 chr9 69312771 69312932 -54763240 - Lx8 LINE L1 -145 7328 7161 5 1113 487 218 101 13 chr9 69314064 69314213 -54761959 - ID_B1 SINE B4 -62 162 1 5 1113 1053 113 17 0 chr9 69314504 69314681 -54761491 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1113 1017 217 14 5 chr9 69314683 69314901 -54761271 - ID_B1 SINE B4 0 224 5 5 1113 219 384 30 8 chr9 69315727 69315861 -54760311 - MIR SINE MIR -7 255 119 5 1113 1053 92 84 34 chr9 69316531 69316710 -54759462 + B2_Mm2 SINE B2 1 188 -7 5 1113 1085 148 11 6 chr9 69317254 69317430 -54758742 + URR1A DNA MER1_type 50 226 0 5 1113 214 310 14 0 chr9 69317549 69317620 -54758552 - PB1D10 SINE Alu -13 104 33 5 1113 212 167 0 0 chr9 69319241 69319283 -54756889 + T-rich Low_complexity Low_complexity 1 42 0 5 1113 828 245 65 28 chr9 69319353 69319567 -54756605 - ID_B1 SINE B4 0 224 3 5 1113 180 329 51 38 chr9 69320027 69320106 -54756066 - MIR SINE MIR -101 161 82 5 1113 941 252 38 36 chr9 69320164 69320487 -54755685 - MTE2b LTR MaLR 0 379 1 5 1113 616 254 0 23 chr9 69321240 69321369 -54754803 + B3A SINE B2 15 140 -58 5 1113 872 174 47 23 chr9 69321711 69321882 -54754290 + B2_Mm2 SINE B2 7 181 -14 5 1113 231 57 29 0 chr9 69322196 69322231 -54753941 - B1_Mm SINE Alu -1 146 111 5 1113 380 0 130 0 chr9 69322248 69322348 -54753824 + (CAGG)n Simple_repeat Simple_repeat 4 116 0 5 1113 353 177 156 24 chr9 69322351 69322448 -54753724 + PB1D9 SINE Alu 39 146 -1 5 1113 342 0 0 0 chr9 69324163 69324201 -54751971 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1113 728 243 127 0 chr9 69324620 69324793 -54751379 + B4A SINE B4 1 195 -97 5 1113 378 0 0 0 chr9 69324795 69324837 -54751335 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1113 1100 181 17 64 chr9 69325776 69326012 -54750160 + URR1B DNA MER1_type 1 225 0 5 1113 209 262 0 0 chr9 69326278 69326320 -54749852 + G-rich Low_complexity Low_complexity 3 44 0 5 1113 524 294 61 27 chr9 69326537 69326684 -54749488 + B4 SINE B4 132 283 -9 5 1113 248 77 26 0 chr9 69326688 69326727 -54749445 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1113 443 260 163 0 chr9 69328601 69328724 -54747448 + ID_B1 SINE B4 69 211 -13 5 1113 915 130 0 0 chr9 69328725 69328871 -54747301 + (GGAGAA)n Simple_repeat Simple_repeat 2 147 0 5 1113 602 38 25 0 chr9 69330546 69330626 -54745546 + (GAAAA)n Simple_repeat Simple_repeat 2 83 0 5 1113 694 264 36 10 chr9 69330962 69331157 -54745015 - B4 SINE B4 -6 286 87 5 1113 493 266 0 31 chr9 69331163 69331291 -54744881 - RSINE1 SINE B4 -37 128 5 5 1113 189 0 0 0 chr9 69331672 69331693 -54744479 + (TCCC)n Simple_repeat Simple_repeat 1 21 0 5 1113 1272 260 128 21 chr9 69333147 69333576 -54742596 - MLT1F1 LTR MaLR -57 512 38 5 1113 186 43 0 0 chr9 69334573 69334596 -54741576 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1113 395 288 61 88 chr9 69334611 69334844 -54741328 - B4 SINE B4 -2 290 81 5 1113 1081 155 125 0 chr9 69336008 69336208 -54739964 - URR1A DNA MER1_type 0 226 2 5 139 710 220 24 157 chr9 69336886 69337096 -54739076 + B3A SINE B2 3 184 -11 6 1114 404 331 16 8 chr9 69337202 69337330 -54738842 + B3A SINE B2 25 153 -45 6 1114 360 0 0 0 chr9 69337334 69337374 -54738798 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1114 702 191 6 22 chr9 69337619 69337801 -54738371 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1114 351 167 15 15 chr9 69338208 69338275 -54737897 - ID4 SINE ID -13 70 4 6 1114 1077 246 42 11 chr9 69338319 69338602 -54737570 - B4 SINE B4 0 292 1 6 1114 409 279 9 18 chr9 69338609 69338722 -54737450 - PB1D10 SINE Alu -5 112 1 6 1114 369 0 0 0 chr9 69338789 69338830 -54737342 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1114 412 291 45 38 chr9 69339829 69339986 -54736186 - RMER15 LTR ERVL -14 561 404 6 1114 263 309 0 0 chr9 69340180 69340248 -54735924 - Lx8 LINE L1 -373 7100 7033 6 1114 1251 48 0 0 chr9 69340327 69340473 -54735699 - B1_Mus2 SINE Alu 0 147 2 6 1114 767 222 32 54 chr9 69340762 69340948 -54735224 - B3A SINE B2 -16 182 1 6 1114 588 14 0 0 chr9 69340949 69341018 -54735154 + (TATG)n Simple_repeat Simple_repeat 2 70 0 6 1114 698 213 180 49 chr9 69341021 69341204 -54734968 - ID_B1 SINE B4 -15 209 3 6 1114 2133 80 31 3 chr9 69341599 69341886 -54734286 + ORR1A2 LTR MaLR 25 319 -8 6 1114 429 304 47 117 chr9 69341888 69341914 -54734258 - MT2A LTR ERVL -5 596 579 6 1114 1130 129 76 5 chr9 69341914 69341942 -54734230 + URR1A DNA MER1_type 2 29 -197 6 1114 252 0 0 0 chr9 69341942 69341970 -54734202 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1114 1130 129 76 5 chr9 69341970 69342151 -54734021 + URR1A DNA MER1_type 30 224 -2 6 1114 942 288 44 4 chr9 69342151 69342427 -54733745 - MT2A LTR ERVL -23 578 231 6 1114 216 97 0 0 chr9 69342429 69342460 -54733712 + (CACCAT)n Simple_repeat Simple_repeat 5 35 0 6 1114 303 202 0 0 chr9 69342458 69342547 -54733625 + (CAG)n Simple_repeat Simple_repeat 1 89 0 6 1114 511 238 80 40 chr9 69342547 69342722 -54733450 - MT2A LTR ERVL -291 242 61 6 1114 395 276 80 43 chr9 69342641 69342804 -54733368 - MTD LTR MaLR -241 178 10 6 1114 377 176 0 93 chr9 69342815 69342890 -54733282 - ID SINE ID -151 73 6 6 1114 441 0 0 0 chr9 69343327 69343376 -54732796 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1114 536 325 81 27 chr9 69343439 69343825 -54732347 - L1MA5A LINE L1 -374 5923 5523 6 1114 239 163 102 0 chr9 69344661 69344710 -54731462 - HAL1 LINE L1 -2034 473 420 6 1114 198 0 0 0 chr9 69345382 69345404 -54730768 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1114 682 256 53 26 chr9 69345446 69345635 -54730537 + ID_B1 SINE B4 3 196 -28 6 1114 296 309 25 91 chr9 69345528 69345649 -54730523 + PB1D10 SINE Alu 5 117 0 6 1114 215 190 0 17 chr9 69346741 69346800 -54729372 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1114 232 167 40 40 chr9 69346801 69346851 -54729321 + B1F SINE Alu 100 149 0 6 1114 1079 287 35 54 chr9 69346995 69347422 -54728750 - MTD LTR MaLR 0 419 1 6 1114 750 251 35 66 chr9 69347680 69347906 -54728266 - MTE2b LTR MaLR -109 270 52 6 1114 4036 62 6 6 chr9 69347925 69348440 -54727732 - L1_Mus3 LINE L1 0 6638 6124 6 1114 426 105 43 0 chr9 69348440 69348536 -54727636 + L1_Mus3 LINE L1 5769 5874 -693 6 1114 583 212 153 26 chr9 69348536 69348725 -54727447 + B3 SINE B2 2 214 -2 6 1114 509 201 17 0 chr9 69349166 69349285 -54726887 + PB1 SINE Alu 17 127 0 6 1114 848 186 149 0 chr9 69349308 69349496 -54726676 + B3 SINE B2 1 216 0 6 1114 227 359 58 0 chr9 69349615 69349718 -54726454 + ORR1E LTR MaLR 6 114 -245 6 1114 236 237 0 0 chr9 69349718 69349777 -54726395 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1114 412 299 6 12 chr9 69349840 69350042 -54726130 + (CA)n Simple_repeat Simple_repeat 1 200 0 6 1114 206 273 15 15 chr9 69350032 69350099 -54726073 + (CATA)n Simple_repeat Simple_repeat 1 67 0 6 1114 367 251 11 0 chr9 69350100 69350275 -54725897 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 1114 966 260 11 81 chr9 69350946 69351218 -54724954 + B4 SINE B4 19 271 -21 6 1114 300 331 117 29 chr9 69351271 69351442 -54724730 + HAL1-3A_ME LINE L1 1994 2179 -679 6 1114 26 0 0 0 chr9 69351685 69351711 -54724461 + AT_rich Low_complexity Low_complexity 1 26 0 6 1114 254 291 73 0 chr9 69351749 69351859 -54724313 - RSINE1 SINE B4 0 165 48 6 1114 923 251 28 9 chr9 69351967 69352180 -54723992 + ID_B1 SINE B4 3 219 -5 6 1114 797 140 331 0 chr9 69352411 69352568 -54723604 - B3 SINE B2 -6 210 2 6 1114 207 100 0 0 chr9 69352974 69353004 -54723168 + (CCG)n Simple_repeat Simple_repeat 1 30 0 6 1114 1082 203 32 18 chr9 69353273 69353494 -54722678 + Lx8 LINE L1 6606 6829 -644 6 1114 21 57 0 0 chr9 69353506 69353541 -54722631 + AT_rich Low_complexity Low_complexity 1 35 0 6 1114 488 16 16 0 chr9 69354726 69354787 -54721385 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1114 532 226 41 68 chr9 69355970 69356117 -54720055 + RSINE1 SINE B4 11 153 -12 6 1114 243 0 0 0 chr9 69356128 69356155 -54720017 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1114 183 241 0 147 chr9 69356447 69356515 -54719657 - MIRc SINE MIR -92 176 119 6 1114 274 299 139 16 chr9 69356680 69356809 -54719363 + MER5A1 DNA MER1_type 20 164 -2 6 1114 248 190 117 33 chr9 69356903 69356963 -54719209 - MTEa LTR MaLR -1 378 314 6 1114 243 175 0 0 chr9 69356963 69357020 -54719152 + GA-rich Low_complexity Low_complexity 4 60 0 6 1114 1348 207 88 0 chr9 69357023 69357308 -54718864 - MTEa LTR MaLR -55 324 15 6 1114 1972 119 108 6 chr9 69357642 69357956 -54718216 + ORR1B1 LTR MaLR 41 386 -8 6 1114 303 283 220 11 chr9 69357963 69358149 -54718023 + L1ME4a LINE L1 5788 6012 -112 6 1114 342 0 0 0 chr9 69358205 69358243 -54717929 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1114 389 306 157 56 chr9 69358278 69358545 -54717627 + MLT1A LTR MaLR 1 294 -80 6 1114 639 285 25 62 chr9 69358516 69358548 -54717624 + CYRA11_Mm Unknown Y-chromosome 143 165 -452 6 1114 1360 149 14 0 chr9 69358548 69358762 -54717410 - URR1B DNA MER1_type -1 224 8 6 1114 239 242 30 15 chr9 69358791 69358858 -54717314 + MLT1A LTR MaLR 340 407 -1 6 1114 731 284 30 70 chr9 69359288 69359587 -54716585 + B4A SINE B4 2 288 -4 6 1114 291 71 0 0 chr9 69359594 69359636 -54716536 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1114 211 170 43 0 chr9 69360471 69360518 -54715654 + G-rich Low_complexity Low_complexity 6 54 0 6 1114 411 220 66 33 chr9 69360632 69360754 -54715418 - MER5A DNA MER1_type -1 188 63 6 1114 302 319 28 0 chr9 69360755 69360827 -54715345 - B4A SINE B4 0 292 219 6 1114 677 125 8 0 chr9 69360831 69360951 -54715221 + (TG)n Simple_repeat Simple_repeat 2 122 0 6 1114 588 286 182 16 chr9 69360962 69361204 -54714968 - B4A SINE B4 0 292 11 6 1114 207 245 0 0 chr9 69361783 69361836 -54714336 + CT-rich Low_complexity Low_complexity 3 55 0 6 1114 690 292 45 42 chr9 69362591 69362880 -54713292 + B4A SINE B4 2 291 -1 6 1114 1490 241 24 42 chr9 69363210 69363526 -54712646 + MTEa LTR MaLR 1 318 -61 6 1114 760 194 133 6 chr9 69363526 69363707 -54712465 + B3 SINE B2 5 208 -8 6 1114 1490 241 24 42 chr9 69363707 69363772 -54712400 + MTEa LTR MaLR 319 375 -4 6 1114 257 220 105 42 chr9 69363952 69364047 -54712125 + MIRc SINE MIR 49 149 -119 6 1114 435 38 0 0 chr9 69364153 69364206 -54711966 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1114 648 279 41 52 chr9 69364208 69364462 -54711710 - ID_B1 SINE B4 -14 278 8 6 1114 711 237 198 0 chr9 69364436 69364613 -54711559 - B4 SINE B4 -65 227 16 6 1114 257 290 0 0 chr9 69364613 69364682 -54711490 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 6 1114 693 178 80 15 chr9 69364829 69364966 -54711206 - B1_Mur1 SINE Alu -2 147 2 6 1114 301 266 153 18 chr9 69366671 69366782 -54709390 + B1F1 SINE Alu 24 149 0 6 1114 559 315 62 59 chr9 69367313 69367671 -54708501 - ORR1E LTR MaLR 0 359 1 6 1114 235 282 81 12 chr9 69368128 69368214 -54707958 - L3 LINE CR1 -256 4233 4142 6 1114 384 77 0 0 chr9 69368224 69368276 -54707896 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 6 1114 4442 180 54 78 chr9 69368298 69368371 -54707801 - RMER1A Other Other -61 969 870 6 1114 279 0 0 0 chr9 69368371 69368402 -54707770 + (CAA)n Simple_repeat Simple_repeat 3 33 0 6 1114 4442 217 80 66 chr9 69368402 69369843 -54706329 - RMER1A Other Other -161 869 1 6 1114 243 0 0 0 chr9 69370247 69370274 -54705898 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1114 311 231 0 44 chr9 69370286 69370354 -54705818 - B4A SINE B4 0 292 228 6 1114 318 106 0 0 chr9 69370404 69370451 -54705721 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 6 1114 709 286 53 25 chr9 69370451 69370734 -54705438 - B4A SINE B4 0 292 2 6 1114 577 291 101 10 chr9 69371064 69371262 -54704910 - B4A SINE B4 -76 216 1 6 1114 218 65 32 0 chr9 69371924 69371955 -54704217 - RSINE1 SINE B4 -126 39 8 6 1114 346 310 70 0 chr9 69373319 69373448 -54702724 + RMER15 LTR ERVL 426 563 -12 6 1114 429 248 56 92 chr9 69373556 69373698 -54702474 + Arthur1A DNA Tip100 3 139 -38 6 1114 642 96 0 0 chr9 69373722 69373826 -54702346 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 1114 624 268 26 0 chr9 69373826 69373979 -54702193 - RSINE1 SINE B4 -6 159 3 6 1114 24 0 0 0 chr9 69374400 69374424 -54701748 + AT_rich Low_complexity Low_complexity 1 24 0 6 1114 192 77 0 0 chr9 69374641 69374667 -54701505 + (TTG)n Simple_repeat Simple_repeat 1 26 0 6 1114 348 24 0 0 chr9 69374703 69374744 -54701428 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1114 493 225 48 23 chr9 69374766 69374915 -54701257 - B4 SINE B4 -64 160 1 6 1114 291 71 0 0 chr9 69374916 69374958 -54701214 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1114 472 95 16 0 chr9 69374972 69375035 -54701137 + RMER20A LTR ERVK 1 64 -452 6 1114 221 57 0 28 chr9 69376016 69376052 -54700120 + (TTG)n Simple_repeat Simple_repeat 1 35 0 7 1114 438 140 15 0 chr9 69376098 69376179 -54699993 + B1_Mus1 SINE Alu 15 107 -20 7 1114 203 133 0 0 chr9 69376179 69376209 -54699963 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 7 1114 508 257 58 14 chr9 69376953 69377091 -54699081 + B4A SINE B4 1 144 -148 7 1114 298 205 12 12 chr9 69377103 69377187 -54698985 + GA-rich Low_complexity Low_complexity 2 85 0 7 1114 645 261 0 43 chr9 69377187 69377351 -54698821 + B4A SINE B4 124 280 -12 7 1114 778 241 16 102 chr9 69377778 69378032 -54698140 - B4 SINE B4 -60 232 1 7 1114 402 21 0 0 chr9 69378102 69378149 -54698023 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1114 180 125 0 0 chr9 69378482 69378514 -54697658 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 7 1114 305 200 0 0 chr9 69379451 69379506 -54696666 - ID_B1 SINE B4 -1 223 169 7 1114 236 246 48 16 chr9 69379455 69379517 -54696655 - B1_Mur1 SINE Alu -5 144 81 7 1114 387 0 0 0 chr9 69379526 69379569 -54696603 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1114 354 342 86 106 chr9 69379571 69379816 -54696356 - B4 SINE B4 -23 269 30 7 1114 302 237 93 93 chr9 69379791 69379898 -54696274 - B1F1 SINE Alu -35 114 8 7 1114 724 221 47 0 chr9 69379829 69379978 -54696194 - ID_B1 SINE B4 -67 157 2 7 1114 5161 37 0 0 chr9 69380654 69381254 -54694918 + L1Md_T LINE L1 5983 6582 0 7 1114 763 300 6 118 chr9 69381294 69381623 -54694549 + B4A SINE B4 1 292 0 7 1114 510 188 0 0 chr9 69381626 69381727 -54694445 + (CA)n Simple_repeat Simple_repeat 2 102 0 7 1114 370 311 81 25 chr9 69381787 69381985 -54694187 - L3 LINE CR1 -801 3688 3480 7 1114 427 308 60 0 chr9 69382279 69382396 -54693776 - ID_B1 SINE B4 -99 125 2 7 1114 1040 114 217 0 chr9 69382994 69383178 -54692994 - URR1B DNA MER1_type 0 225 2 7 1114 835 296 14 0 chr9 69383412 69383625 -54692547 + MTEa LTR MaLR 1 216 -163 7 1114 342 0 0 0 chr9 69383673 69383711 -54692461 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1114 451 260 7 80 chr9 69383748 69383886 -54692286 + RMER20A LTR ERVK 375 502 -14 7 1114 1877 217 80 0 chr9 69383939 69384326 -54691846 + MTD LTR MaLR 2 419 0 7 1114 926 218 16 16 chr9 69384635 69384817 -54691355 - B3A SINE B2 -16 182 1 7 1114 871 287 14 17 chr9 69385427 69385718 -54690454 - B4A SINE B4 -2 290 1 7 1114 324 0 0 0 chr9 69386031 69386067 -54690105 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1114 754 235 26 0 chr9 69386070 69386223 -54689949 - B3A SINE B2 -41 157 1 7 1114 1848 80 40 0 chr9 69386243 69386494 -54689678 - L1_Mur1 LINE L1 -927 4959 4699 7 1114 1942 103 11 0 chr9 69386490 69386752 -54689420 + Lx3_Mus LINE L1 6682 6946 -63 7 1114 941 228 52 21 chr9 69387250 69387483 -54688689 - MTEa LTR MaLR -139 240 1 7 1114 902 147 7 11 chr9 69388767 69389039 -54687133 + CT-rich Low_complexity Low_complexity 1 270 0 7 1114 787 291 49 41 chr9 69389067 69389311 -54686861 - B4A SINE B4 -46 246 1 7 1114 832 161 26 23 chr9 69389324 69389516 -54686656 - B3 SINE B2 -1 194 1 7 1114 743 91 0 0 chr9 69390135 69390234 -54685938 + B1_Mus2 SINE Alu 49 147 0 7 1114 513 32 0 0 chr9 69390778 69390841 -54685331 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1114 660 256 62 151 chr9 69390841 69391145 -54685027 - B4 SINE B4 -15 277 1 7 1114 525 241 216 25 chr9 69391292 69391496 -54684676 + MTD LTR MaLR 175 417 -2 7 1114 1051 147 132 0 chr9 69391751 69391948 -54684224 - URR1B DNA MER1_type 0 225 3 7 1114 754 262 147 32 chr9 69392388 69392640 -54683532 - B4A SINE B4 0 292 12 7 1114 212 328 207 38 chr9 69392732 69392998 -54683174 + L3 LINE CR1 4101 4411 -78 7 1114 879 219 98 0 chr9 69393047 69393230 -54682942 + B3 SINE B2 2 202 -14 7 1114 249 108 0 0 chr9 69393244 69393281 -54682891 + (TTC)n Simple_repeat Simple_repeat 2 38 0 7 1114 1035 43 2 0 chr9 69393282 69393416 -54682756 - B1_Mus2 SINE Alu 0 147 14 7 1114 1140 238 137 0 chr9 69395350 69395627 -54680545 - MTC LTR MaLR -106 315 1 7 1114 804 247 22 0 chr9 69395742 69395920 -54680252 - B3A SINE B2 -16 182 1 7 1114 456 19 0 0 chr9 69396454 69396507 -54679665 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1114 430 279 38 81 chr9 69396593 69396753 -54679419 - B3A SINE B2 -42 156 4 7 1114 745 245 78 0 chr9 69396803 69397007 -54679165 - ID_B1 SINE B4 -3 221 2 7 1114 312 91 0 0 chr9 69397321 69397365 -54678807 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 7 1114 1634 208 82 0 chr9 69397472 69397813 -54678359 - ORR1D2 LTR MaLR 0 370 2 7 1114 721 221 86 27 chr9 69398518 69398704 -54677468 + B4A SINE B4 74 270 -22 7 1114 686 120 8 0 chr9 69398704 69398829 -54677343 + (CA)n Simple_repeat Simple_repeat 1 126 0 7 1114 278 200 0 0 chr9 69399001 69399051 -54677121 - MTEa LTR MaLR -13 366 317 7 1114 400 234 103 0 chr9 69399064 69399171 -54677001 - MTEa LTR MaLR -112 267 150 7 1114 1027 162 10 8 chr9 69399174 69399346 -54676826 + ORR1D1 LTR MaLR 1 161 -213 7 1114 387 0 0 0 chr9 69399346 69399389 -54676783 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 1114 675 252 28 0 chr9 69399391 69399534 -54676638 - MTEa LTR MaLR -228 151 5 7 1114 262 160 327 39 chr9 69399682 69399786 -54676386 + MTE2a LTR MaLR 4 137 -242 7 1114 700 325 17 50 chr9 69399755 69400056 -54676116 + MT2A LTR ERVL 107 397 -136 7 1114 402 57 0 0 chr9 69400091 69400144 -54676028 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1114 234 200 0 20 chr9 69400412 69400463 -54675709 + T-rich Low_complexity Low_complexity 2 51 0 7 1114 191 179 239 0 chr9 69400561 69400628 -54675544 + MIRm SINE MIR 99 181 -95 7 1114 1827 137 141 31 chr9 69401343 69401698 -54674474 + ORR1B1 LTR MaLR 1 394 0 7 1114 342 354 25 50 chr9 69401901 69402103 -54674069 + MLT1A LTR MaLR 1 197 -177 7 1114 1061 292 60 11 chr9 69402164 69402511 -54673661 + MTE2b LTR MaLR 1 364 -15 7 1114 3112 258 116 42 chr9 69402549 69403762 -54672410 + Lx6 LINE L1 5875 7433 -27 7 1114 796 288 167 42 chr9 69404029 69404532 -54671640 - RCHARR1 DNA MER1_type -14 960 395 7 1114 485 265 39 45 chr9 69404528 69404682 -54671490 - RCHARR1 DNA MER1_type -821 153 1 7 1114 524 89 13 0 chr9 69404913 69404992 -54671180 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1114 254 288 151 0 chr9 69405213 69405286 -54670886 + B4A SINE B4 2 85 -207 7 1114 253 342 0 0 chr9 69405723 69405799 -54670373 + CT-rich Low_complexity Low_complexity 2 77 0 7 1114 342 0 0 0 chr9 69407411 69407449 -54668723 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1114 4939 66 49 1 chr9 69407449 69408101 -54668071 - L1Md_F2 LINE L1 -19 6563 5881 7 1114 710 276 70 51 chr9 69408128 69408342 -54667830 - ID_B1 SINE B4 -6 218 1 7 1114 654 249 108 61 chr9 69408802 69409016 -54667156 + MTD LTR MaLR 1 224 -195 7 1114 244 310 34 17 chr9 69409220 69409338 -54666834 - L1M4 LINE L1 -256 5918 5799 7 1114 236 53 26 0 chr9 69409363 69409401 -54666771 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 1114 755 224 7 33 chr9 69409403 69409555 -54666617 - B3A SINE B2 -47 151 4 7 1114 536 251 220 9 chr9 69409592 69409938 -54666234 - L1MC LINE L1 -3400 2746 2328 7 1114 846 246 310 18 chr9 69409972 69410353 -54665819 - Lx8 LINE L1 -16 7457 6966 7 1114 739 222 18 18 chr9 69410457 69410622 -54665550 + ID_B1 SINE B4 59 223 -1 7 1114 227 296 20 34 chr9 69410958 69411058 -54665114 + MIRb SINE MIR 117 223 -45 7 1114 1345 220 105 17 chr9 69411231 69411592 -54664580 - MTD LTR MaLR -24 395 3 7 1114 1004 218 158 40 chr9 69411592 69411863 -54664309 - ORR1D2 LTR MaLR -56 314 12 7 1114 439 306 60 32 chr9 69412235 69412451 -54663721 + RMER15 LTR ERVL 347 568 -7 7 1114 1142 225 120 23 chr9 69412510 69412852 -54663320 + MTD LTR MaLR 12 386 -33 7 1114 522 0 0 0 chr9 69413745 69413803 -54662369 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1114 581 292 23 41 chr9 69413854 69413888 -54662284 - B3 SINE B2 0 216 185 7 1114 186 43 0 0 chr9 69413888 69413911 -54662261 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1114 635 292 23 41 chr9 69413911 69414094 -54662078 - B3A SINE B2 -32 184 3 7 1114 512 277 27 0 chr9 69414325 69414437 -54661735 - RSINE1 SINE B4 -48 117 3 7 1114 355 282 12 0 chr9 69414573 69414658 -54661514 - PB1D10 SINE Alu -28 89 4 7 1114 264 200 29 0 chr9 69415361 69415431 -54660741 + Lx8 LINE L1 7402 7473 0 7 1114 1090 172 56 15 chr9 69415441 69415636 -54660536 + B3 SINE B2 1 203 -13 7 1114 943 298 70 4 chr9 69415655 69415928 -54660244 + B4A SINE B4 1 291 -1 7 1114 777 51 0 0 chr9 69416367 69416465 -54659707 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 1114 189 107 0 0 chr9 69417528 69417556 -54658616 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1114 716 307 96 18 chr9 69417591 69417873 -54658299 - MTE2b LTR MaLR 0 379 76 7 1114 1014 183 11 37 chr9 69417889 69418076 -54658096 + URR1A DNA MER1_type 1 182 -44 7 1114 841 248 113 36 chr9 69418110 69418357 -54657815 + B4 SINE B4 27 292 0 7 1114 229 231 58 0 chr9 69418418 69418470 -54657702 - B4 SINE B4 -63 229 175 7 1114 224 204 0 0 chr9 69418472 69418521 -54657651 - B4 SINE B4 -243 49 1 7 1114 265 247 25 38 chr9 69419441 69419521 -54656651 - RMER15 LTR ERVL -76 499 421 7 1114 5329 142 16 16 chr9 69419641 69420514 -54655658 - Lx4B LINE L1 -18 7040 6168 7 1114 252 0 0 0 chr9 69420865 69420893 -54655279 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1114 1857 194 64 32 chr9 69421251 69421656 -54654516 - MTD LTR MaLR -1 418 1 8 1114 781 199 13 33 chr9 69421662 69421813 -54654359 + B4A SINE B4 145 292 0 8 1114 745 122 19 35 chr9 69421813 69422181 -54653991 + (CA)n Simple_repeat Simple_repeat 1 361 0 8 1114 440 194 0 7 chr9 69422196 69422341 -54653831 + (CA)n Simple_repeat Simple_repeat 1 144 0 8 1114 706 276 20 113 chr9 69423914 69424216 -54651956 + B4A SINE B4 1 274 -18 8 1114 550 0 29 0 chr9 69424237 69424307 -54651865 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1114 30 59 0 0 chr9 69424435 69424486 -54651686 + AT_rich Low_complexity Low_complexity 1 51 0 8 1114 877 182 144 0 chr9 69424496 69424677 -54651495 - B3 SINE B2 -9 207 1 8 1114 337 102 41 55 chr9 69424828 69424901 -54651271 + ID4 SINE ID 1 72 -11 8 1114 400 377 25 25 chr9 69425295 69425499 -54650673 + B4A SINE B4 3 206 -86 8 1114 339 319 42 0 chr9 69425703 69425847 -54650325 + L1MA4A LINE L1 5650 5799 -498 8 1114 668 137 10 0 chr9 69425858 69425960 -54650212 - ORR1C2 LTR MaLR 0 384 282 8 1114 609 110 90 0 chr9 69425963 69426063 -54650109 - ORR1C2 LTR MaLR -275 109 1 8 1114 387 311 47 6 chr9 69426070 69426267 -54649905 + L1MA4A LINE L1 5815 6019 -281 8 1114 261 256 26 0 chr9 69426409 69426487 -54649685 + L1M5 LINE L1 5684 5763 -477 8 1114 399 300 81 42 chr9 69426500 69426785 -54649387 + L1MB8 LINE L1 5802 6097 -81 8 1114 815 104 7 7 chr9 69426886 69427021 -54649151 - L1Md_F2 LINE L1 -1 6581 6447 8 1114 744 276 154 11 chr9 69427588 69427848 -54648324 - MTEa LTR MaLR -82 297 1 8 1114 248 308 0 49 chr9 69428050 69428132 -54648040 - MIRc SINE MIR -24 244 167 8 1114 398 230 30 10 chr9 69428162 69428263 -54647909 + PB1D10 SINE Alu 11 127 0 8 1114 258 211 152 22 chr9 69428272 69428364 -54647808 - MIRc SINE MIR -113 163 60 8 1114 226 267 27 0 chr9 69428366 69428441 -54647731 - BC1_Mm scRNA scRNA -42 110 34 8 1114 26 50 0 0 chr9 69428565 69428605 -54647567 + AT_rich Low_complexity Low_complexity 1 40 0 8 1114 323 272 12 12 chr9 69428605 69428687 -54647485 - ID SINE ID -142 82 1 8 1114 478 240 9 9 chr9 69428720 69428825 -54647347 + PB1D9 SINE Alu 4 108 -12 8 1114 351 0 0 0 chr9 69429103 69429142 -54647030 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1114 934 203 24 29 chr9 69429142 69429350 -54646822 - B3 SINE B2 -9 207 1 8 1114 804 276 86 17 chr9 69429718 69430166 -54646006 + Lx8 LINE L1 6932 7464 -9 8 1114 240 268 57 23 chr9 69430184 69430272 -54645900 + PB1D10 SINE Alu 13 103 -14 8 1114 830 191 0 0 chr9 69430352 69430499 -54645673 + B1_Mur2 SINE Alu 3 149 0 8 1114 37 0 0 0 chr9 69430499 69430536 -54645636 + AT_rich Low_complexity Low_complexity 1 37 0 8 1114 505 356 34 51 chr9 69431067 69431360 -54644812 - B4A SINE B4 -1 291 4 8 1114 311 298 97 24 chr9 69431543 69431667 -54644505 + MIRb SINE MIR 124 256 -12 8 1114 627 279 19 38 chr9 69431697 69431726 -54644446 - ORR1E LTR MaLR -151 208 186 8 1114 213 39 0 0 chr9 69431726 69431752 -54644420 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 8 1114 627 279 19 38 chr9 69431752 69431934 -54644238 - ORR1E LTR MaLR -174 185 1 8 1114 457 328 30 79 chr9 69431954 69432311 -54643861 + L1M3 LINE L1 4966 5296 -844 8 1114 660 240 59 20 chr9 69432311 69432515 -54643657 + B3 SINE B2 5 216 0 8 1114 663 270 73 25 chr9 69432515 69432797 -54643375 + L1M3 LINE L1 5297 5604 -708 8 1114 386 290 0 0 chr9 69432800 69432893 -54643279 + B3A SINE B2 1 93 -105 8 1114 22 56 0 0 chr9 69432916 69432952 -54643220 + AT_rich Low_complexity Low_complexity 1 36 0 8 1114 1108 258 138 42 chr9 69432998 69433063 -54643109 - BGLII_B LTR ERVK 0 422 358 8 1114 3306 71 0 0 chr9 69433063 69433470 -54642702 - MTB_Mm LTR MaLR 0 407 1 8 1114 1125 238 120 41 chr9 69433470 69433593 -54642579 - BGLII_B LTR ERVK -65 357 191 8 1114 780 108 0 0 chr9 69433593 69433723 -54642449 + (TC)n Simple_repeat Simple_repeat 2 131 0 8 1114 1125 135 28 37 chr9 69433723 69433918 -54642254 - BGLII_B LTR ERVK -250 191 2 8 1114 288 0 0 0 chr9 69434024 69434056 -54642116 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 8 1114 623 195 8 8 chr9 69434118 69434237 -54641935 + RSINE1 SINE B4 6 124 -41 8 1114 395 246 67 67 chr9 69434237 69434297 -54641875 + B2_Mm2 SINE B2 5 183 -12 8 1114 27 0 0 0 chr9 69434298 69434325 -54641847 + AT_rich Low_complexity Low_complexity 1 27 0 8 1114 845 219 37 23 chr9 69434727 69434942 -54641230 - ID_B1 SINE B4 -5 219 2 8 1114 1049 215 16 56 chr9 69435544 69435795 -54640377 + Lx7 LINE L1 7123 7363 -333 8 1114 1589 164 14 62 chr9 69435845 69436203 -54639969 + Lx7 LINE L1 7356 7696 0 8 1114 291 254 0 0 chr9 69436560 69436615 -54639557 + ID4_ SINE ID 8 62 -21 8 1114 970 271 48 11 chr9 69436642 69436911 -54639261 + B4A SINE B4 10 288 -4 8 1114 951 75 0 0 chr9 69437423 69437569 -54638603 + (TG)n Simple_repeat Simple_repeat 2 147 0 8 1114 460 225 33 83 chr9 69437575 69437696 -54638476 - B3A SINE B2 -41 157 43 8 1114 588 188 12 6 chr9 69438176 69438290 -54637882 + B3 SINE B2 1 112 -86 8 1114 658 211 0 30 chr9 69438344 69438476 -54637696 + B3 SINE B2 89 216 0 8 1114 668 222 14 36 chr9 69438478 69438634 -54637538 + B4 SINE B4 84 234 -58 8 1114 540 0 0 0 chr9 69438634 69438694 -54637478 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1114 882 143 21 7 chr9 69439124 69439265 -54636907 + B1_Mur4 SINE Alu 3 145 -5 8 1114 1176 198 19 0 chr9 69439431 69439643 -54636529 + ID_B1 SINE B4 6 221 -3 8 1114 1161 41 0 0 chr9 69440009 69440156 -54636016 + (TG)n Simple_repeat Simple_repeat 1 147 0 8 1114 1008 86 0 0 chr9 69441107 69441247 -54634925 + (TTC)n Simple_repeat Simple_repeat 3 142 0 8 1114 280 213 16 32 chr9 69441303 69441366 -54634806 + ID4_ SINE ID 1 62 -21 8 1114 269 281 61 0 chr9 69441343 69441425 -54634747 + ID_B1 SINE B4 128 214 -10 8 1114 973 224 28 28 chr9 69441716 69441932 -54634240 + B3 SINE B2 1 216 0 8 1114 3765 40 47 0 chr9 69442018 69442468 -54633704 - L1Md_F2 LINE L1 -12 6570 6100 8 1114 556 180 0 0 chr9 69442758 69442847 -54633325 + B1_Mm SINE Alu 52 140 -7 8 1114 195 344 41 8 chr9 69442855 69442978 -54633194 + MIRb SINE MIR 131 257 -11 8 1114 306 369 72 17 chr9 69443421 69443625 -54632547 - L1MEg LINE L1 -881 5265 5050 8 1114 729 23 0 0 chr9 69443625 69443712 -54632460 + (TG)n Simple_repeat Simple_repeat 2 88 0 8 1114 429 156 32 16 chr9 69443749 69443781 -54632391 + polypyrimidine Low_complexity Low_complexity 96 126 0 8 1114 1096 90 12 0 chr9 69443781 69443948 -54632224 + (TTC)n Simple_repeat Simple_repeat 3 171 0 8 1114 429 156 32 16 chr9 69443948 69444039 -54632133 + CT-rich Low_complexity Low_complexity 2 95 0 8 1114 685 252 7 0 chr9 69444039 69444182 -54631990 - B1F1 SINE Alu -5 144 1 8 1114 288 0 0 0 chr9 69444400 69444432 -54631740 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 8 1114 225 211 0 0 chr9 69444615 69444672 -54631500 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 8 1114 239 289 35 0 chr9 69444883 69444997 -54631175 - L1MEg LINE L1 -5183 1059 942 8 1114 234 186 34 0 chr9 69445332 69445391 -54630781 + RCHARR1 DNA MER1_type 3 63 -911 8 1114 972 282 70 45 chr9 69445442 69445888 -54630284 + RCHARR1 DNA MER1_type 33 489 -485 8 1114 918 33 0 0 chr9 69445888 69446008 -54630164 + B1_Mm SINE Alu 28 147 0 8 1114 931 197 59 20 chr9 69446026 69446280 -54629892 + RCHARR1 DNA MER1_type 482 745 -229 8 1114 678 256 23 0 chr9 69446301 69446473 -54629699 - B3A SINE B2 -19 179 4 8 1114 383 123 0 27 chr9 69446475 69446550 -54629622 + RCHARR1 DNA MER1_type 726 798 -176 8 1114 260 162 96 36 chr9 69447605 69447688 -54628484 + RCHARR1 DNA MER1_type 785 872 -102 8 1114 634 172 0 27 chr9 69447875 69448024 -54628148 + CT-rich Low_complexity Low_complexity 4 148 0 8 1114 634 125 9 9 chr9 69448028 69448141 -54628031 + (TTC)n Simple_repeat Simple_repeat 2 114 0 8 1114 36117 72 13 9 chr9 69448141 69454297 -54621875 - L1Md_F2 LINE L1 0 6582 411 8 1114 848 59 53 12 chr9 69454671 69454842 -54621330 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 8 1114 1052 106 57 9 chr9 69454862 69455199 -54620973 + (TCTA)n Simple_repeat Simple_repeat 1 353 0 8 1114 318 166 0 31 chr9 69455315 69455393 -54620779 - B1_Mm SINE Alu -3 144 49 8 1114 233 260 69 10 chr9 69455560 69455661 -54620511 + L1ME4a LINE L1 5987 6093 -31 8 1114 24 0 0 0 chr9 69455685 69455709 -54620463 + AT_rich Low_complexity Low_complexity 1 24 0 8 1114 2099 115 13 19 chr9 69456666 69456977 -54619195 + RLTR27 LTR ERVK 1 309 0 8 1114 249 33 0 0 chr9 69457094 69457124 -54619048 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 8 1114 1223 256 41 14 chr9 69457213 69457581 -54618591 + MTE2b LTR MaLR 1 378 -1 8 1114 22 0 0 0 chr9 69457739 69457761 -54618411 + AT_rich Low_complexity Low_complexity 1 22 0 8 1114 1423 278 104 21 chr9 69457761 69458346 -54617826 - Lx9 LINE L1 -14 7630 6879 8 1114 350 322 41 20 chr9 69458535 69458681 -54617491 + B1F SINE Alu 1 149 0 8 1114 227 160 0 74 chr9 69458703 69458757 -54617415 + GA-rich Low_complexity Low_complexity 3 52 0 8 1114 1665 154 85 68 chr9 69460155 69460580 -54615592 + RMER10A LTR ERVL 3 434 -8 8 1114 540 245 6 94 chr9 69460608 69460779 -54615393 + ID_B1 SINE B4 57 212 -12 8 1114 503 284 40 25 chr9 69460897 69461096 -54615076 - L1MA6 LINE L1 -127 6173 5972 8 1114 411 198 0 55 chr9 69461157 69461248 -54614924 + Lx7 LINE L1 7168 7253 -443 8 1114 1189 186 153 100 chr9 69461521 69461940 -54614232 + Lx7 LINE L1 7256 7696 0 8 1114 506 309 7 7 chr9 69462078 69462228 -54613944 + RSINE1 SINE B4 2 151 -14 8 1114 300 27 0 0 chr9 69462235 69462272 -54613900 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1114 288 0 0 0 chr9 69462392 69462424 -54613748 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 8 1114 258 238 16 16 chr9 69462496 69462560 -54613612 - B4 SINE B4 -228 64 1 8 1114 330 229 73 0 chr9 69462675 69462771 -54613401 - RSINE1 SINE B4 -59 106 4 8 1114 185 125 75 0 chr9 69463857 69463897 -54612275 + CT-rich Low_complexity Low_complexity 3 45 0 8 1114 651 247 7 7 chr9 69463927 69464074 -54612098 - B1F SINE Alu -1 148 2 8 1114 21 0 0 0 chr9 69464077 69464098 -54612074 + AT_rich Low_complexity Low_complexity 1 21 0 8 1114 1490 209 101 12 chr9 69464377 69464759 -54611413 - MTD LTR MaLR -14 405 3 8 1114 673 282 67 30 chr9 69465908 69466175 -54609997 - B4 SINE B4 -14 278 2 8 1114 1753 16 0 0 chr9 69466188 69466380 -54609792 - B2_Mm1a SINE B2 -1 192 1 9 1114 219 36 0 0 chr9 69466528 69466556 -54609616 + (CAAAAA)n Simple_repeat Simple_repeat 5 32 0 9 1114 207 0 0 0 chr9 69467445 69467468 -54608704 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1114 606 118 0 0 chr9 69467480 69467573 -54608599 + (GA)n Simple_repeat Simple_repeat 1 93 0 9 1115 23 33 0 0 chr9 69468496 69468526 -54607646 + AT_rich Low_complexity Low_complexity 1 30 0 9 1115 219 281 168 84 chr9 69468976 69469190 -54606982 + B4A SINE B4 3 234 -58 9 1115 291 54 0 0 chr9 69469212 69469249 -54606923 + (TCTCCC)n Simple_repeat Simple_repeat 1 37 0 9 1115 21 36 0 0 chr9 69469625 69469653 -54606519 + AT_rich Low_complexity Low_complexity 1 28 0 9 1115 251 269 0 93 chr9 69469798 69469884 -54606288 - Lx8 LINE L1 -326 7147 7070 9 1115 347 256 54 9 chr9 69469934 69470049 -54606123 - L1M5 LINE L1 -749 5695 5568 9 1115 396 0 0 0 chr9 69470788 69470832 -54605340 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1115 705 174 61 0 chr9 69472050 69472182 -54603990 - B1_Mur1 SINE Alu -8 141 2 9 1115 788 163 56 7 chr9 69472396 69472538 -54603634 - B1_Mur2 SINE Alu 0 149 1 9 1115 615 185 157 38 chr9 69472708 69472893 -54603279 + B3 SINE B2 2 208 -8 9 1115 746 278 15 5 chr9 69472997 69473203 -54602969 + MLT1B LTR MaLR 2 209 -181 9 1115 392 245 9 29 chr9 69473212 69473317 -54602855 + MLT1B LTR MaLR 348 450 -17 9 1115 429 264 115 8 chr9 69473380 69473510 -54602662 - B3 SINE B2 -68 148 5 9 1115 516 181 51 0 chr9 69473576 69473719 -54602453 - B3 SINE B2 -3 192 39 9 1115 2054 148 15 77 chr9 69473814 69474217 -54601955 - ORR1C1 LTR MaLR 0 378 1 9 1115 558 275 62 6 chr9 69475192 69475371 -54600801 - RMER5 LTR ERV1 -5 529 341 9 1115 306 0 0 0 chr9 69475387 69475421 -54600751 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 1115 272 347 0 0 chr9 69475433 69475508 -54600664 - RSINE1 SINE B4 -88 77 3 9 1115 364 290 35 65 chr9 69475515 69475744 -54600428 - RMER5 LTR ERV1 -186 348 127 9 1115 348 24 0 0 chr9 69476184 69476225 -54599947 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1115 2387 172 92 72 chr9 69477366 69477922 -54598250 + RMER2 LTR ERV1 1 567 0 9 1115 450 286 9 0 chr9 69478161 69478266 -54597906 + PB1D10 SINE Alu 1 106 -11 9 1115 1149 178 9 23 chr9 69478302 69478521 -54597651 - B3 SINE B2 0 216 1 9 1115 744 259 93 0 chr9 69478562 69478755 -54597417 - ID_B1 SINE B4 -13 211 1 9 1115 247 280 48 124 chr9 69479210 69479360 -54596812 + ID_B1 SINE B4 2 159 -133 9 1115 277 277 6 6 chr9 69479441 69479609 -54596563 + (CA)n Simple_repeat Simple_repeat 1 168 0 9 1115 403 256 29 58 chr9 69479651 69479788 -54596384 + MLT1A0 LTR MaLR 167 299 -66 9 1115 253 159 0 0 chr9 69480348 69480392 -54595780 - B1_Mur4 SINE Alu -5 145 102 9 1115 223 175 0 0 chr9 69481689 69481729 -54594443 + (TTG)n Simple_repeat Simple_repeat 1 40 0 9 1115 275 312 27 18 chr9 69482530 69482641 -54593531 - MER53 DNA hAT -23 170 59 9 1115 279 0 0 0 chr9 69482734 69482765 -54593407 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1115 21 0 0 0 chr9 69482816 69482837 -54593335 + AT_rich Low_complexity Low_complexity 1 21 0 9 1115 515 252 83 8 chr9 69482839 69482971 -54593201 - RSINE1 SINE B4 -22 143 2 9 1115 842 220 39 48 chr9 69483051 69483280 -54592892 - B4 SINE B4 -64 228 2 9 1115 634 218 0 22 chr9 69483436 69483572 -54592600 + B1_Mur4 SINE Alu 9 141 -9 9 1115 342 0 0 0 chr9 69483849 69483887 -54592285 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1115 925 141 39 17 chr9 69483887 69484067 -54592105 + URR1A DNA MER1_type 43 226 0 9 1115 845 235 76 70 chr9 69484099 69484401 -54591771 + MTD LTR MaLR 81 384 -35 9 1115 618 281 114 8 chr9 69485436 69485673 -54590499 + B4A SINE B4 3 264 -28 9 1115 771 280 43 0 chr9 69486164 69486371 -54589801 + ID_B1 SINE B4 1 216 -8 9 1115 2031 209 32 12 chr9 69487305 69487708 -54588464 - Lx5 LINE L1 -8 7042 6632 9 1115 819 218 103 5 chr9 69487909 69488103 -54588069 + ID_B1 SINE B4 4 216 -8 9 1115 689 183 46 0 chr9 69488115 69488246 -54587926 + B1_Mur2 SINE Alu 2 138 -11 9 1115 468 0 0 0 chr9 69488246 69488298 -54587874 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1115 1321 290 3 17 chr9 69489300 69489661 -54586511 + MTE2b LTR MaLR 19 374 -5 9 1115 257 253 65 11 chr9 69489985 69490077 -54586095 - ORR1E LTR MaLR -13 366 270 9 1115 373 349 41 56 chr9 69490111 69490308 -54585864 - ORR1E LTR MaLR -164 195 2 9 1115 193 339 23 39 chr9 69491005 69491134 -54585038 - MIRc SINE MIR -49 219 93 9 1115 616 265 40 66 chr9 69491707 69491905 -54584267 + B3A SINE B2 1 193 -5 9 1115 23 33 0 0 chr9 69492359 69492389 -54583783 + AT_rich Low_complexity Low_complexity 1 30 0 9 1115 686 219 124 54 chr9 69492651 69492999 -54583173 + MTD LTR MaLR 1 365 -14 9 1115 257 273 0 54 chr9 69493865 69493958 -54582214 + L1MEe LINE L1 207 294 -4560 9 1115 661 264 35 25 chr9 69494365 69494567 -54581605 + Lx9 LINE L1 7036 7239 -405 9 1115 313 227 158 63 chr9 69494567 69494694 -54581478 - MTEa LTR MaLR -230 149 11 9 1115 709 270 122 31 chr9 69494822 69494964 -54581208 + RMER15 LTR ERVL 216 358 -217 9 1115 453 36 0 0 chr9 69494964 69495019 -54581153 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1115 678 25 0 0 chr9 69495019 69495098 -54581074 + (GA)n Simple_repeat Simple_repeat 1 80 0 9 1115 709 270 122 31 chr9 69495098 69495248 -54580924 + RMER15 LTR ERVL 359 535 -40 9 1115 2400 155 11 64 chr9 69496223 69496663 -54579509 + MTC LTR MaLR 1 417 -4 9 1115 315 283 6 16 chr9 69496677 69496805 -54579367 - L1M4b LINE L1 -4516 2510 2277 9 1115 1684 193 57 124 chr9 69496805 69496986 -54579186 - ORR1D1-int LTR MaLR -895 475 283 9 1115 201 74 0 0 chr9 69496986 69497013 -54579159 + (CAAGA)n Simple_repeat Simple_repeat 2 28 0 9 1115 1684 193 57 124 chr9 69497013 69497340 -54578832 - ORR1D1-int LTR MaLR -1088 282 1 9 1115 851 257 246 3 chr9 69497340 69497473 -54578699 - ORR1D1 LTR MaLR 0 374 168 9 1115 411 21 0 0 chr9 69497473 69497521 -54578651 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1115 851 257 246 3 chr9 69497521 69497688 -54578484 - ORR1D1 LTR MaLR -207 167 2 9 1115 852 246 14 43 chr9 69499012 69499220 -54576952 - ID_B1 SINE B4 -21 203 2 9 1115 750 122 16 39 chr9 69499353 69499481 -54576691 - B1_Mus2 SINE Alu 0 147 23 9 1115 289 216 114 107 chr9 69499359 69499499 -54576673 - B4 SINE B4 -69 223 83 9 1115 187 268 40 53 chr9 69501025 69501100 -54575072 + L3 LINE CR1 920 993 -3496 1 1115 216 0 0 0 chr9 69501162 69501186 -54574986 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1115 3525 33 30 14 chr9 69501360 69501789 -54574383 + RLTR10C LTR ERVK 1 436 0 3 1115 286 342 98 26 chr9 69501849 69502083 -54574089 + ORR1E LTR MaLR 1 251 -108 4 1115 767 241 173 25 chr9 69503177 69503420 -54572752 + RMER15 LTR ERVL 297 575 0 5 1115 336 343 74 7 chr9 69504474 69504609 -54571563 + MIRb SINE MIR 35 178 -90 6 1115 1104 131 152 0 chr9 69505109 69505300 -54570872 - URR1B DNA MER1_type 0 225 6 7 1115 498 304 68 17 chr9 69505304 69505481 -54570691 + B4A SINE B4 36 221 -71 8 1115 260 250 78 0 chr9 69505527 69505591 -54570581 + B4A SINE B4 224 292 0 8 1115 229 269 0 0 chr9 69505591 69505691 -54570481 + (CA)n Simple_repeat Simple_repeat 1 100 0 9 1115 2906 167 58 93 chr9 69505795 69506502 -54569670 - RMER1B Other Other 0 1066 385 1 1115 773 272 32 39 chr9 69506939 69507218 -54568954 + B4A SINE B4 2 278 -14 1 1115 271 258 89 82 chr9 69507517 69507652 -54568520 - MER34A LTR ERV1 0 571 436 1 1115 699 313 64 51 chr9 69507849 69507892 -54568280 + MTE2b LTR MaLR 1 41 -378 1 1115 864 218 48 19 chr9 69507892 69508098 -54568074 + B3 SINE B2 5 216 0 1 1115 717 270 69 49 chr9 69508098 69508445 -54567727 + MTE2b LTR MaLR 42 365 -14 1 1115 243 0 0 0 chr9 69508556 69508583 -54567589 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1115 1166 43 0 0 chr9 69508583 69508721 -54567451 - B1_Mus2 SINE Alu -9 138 1 1 1115 1953 155 19 40 chr9 69508895 69509265 -54566907 + ORR1D1 LTR MaLR 1 362 -12 1 1115 203 218 0 18 chr9 69509564 69509620 -54566552 + GA-rich Low_complexity Low_complexity 1 55 0 1 1115 376 313 6 6 chr9 69510576 69510756 -54565416 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1115 1089 81 119 0 chr9 69511528 69511688 -54564484 + B2_Mm1t SINE B2 1 179 -14 2 1115 398 118 13 0 chr9 69511720 69511791 -54564381 + B2_Mm2 SINE B2 47 121 -95 2 1115 185 0 40 0 chr9 69511799 69511824 -54564348 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2 1115 445 316 31 43 chr9 69512127 69512289 -54563883 + RSINE1 SINE B4 4 163 -2 2 1115 959 88 29 10 chr9 69512737 69512947 -54563225 + (TAGA)n Simple_repeat Simple_repeat 1 214 0 2 1115 209 119 24 0 chr9 69512940 69512982 -54563190 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1115 456 19 0 0 chr9 69513018 69513071 -54563101 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 2 1115 260 175 0 0 chr9 69513100 69513140 -54563032 - ID SINE ID -184 40 1 2 1115 363 165 0 0 chr9 69513601 69513686 -54562486 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2 1115 785 171 122 0 chr9 69513689 69513853 -54562319 - Lx4B LINE L1 -4 7054 6871 2 1115 1144 197 10 0 chr9 69513867 69514065 -54562107 - B3 SINE B2 -13 203 4 3 1115 192 0 24 95 chr9 69514207 69514249 -54561923 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1115 312 197 45 0 chr9 69514284 69514350 -54561822 - B4 SINE B4 -9 283 215 3 1115 589 272 5 113 chr9 69514361 69514556 -54561616 - B3A SINE B2 -1 197 24 3 1115 180 0 0 0 chr9 69515116 69515136 -54561036 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1115 552 296 203 25 chr9 69515555 69515802 -54560370 - B4A SINE B4 0 292 2 3 1115 252 329 0 0 chr9 69515808 69515878 -54560294 - MIRm SINE MIR -120 156 87 3 1115 181 83 0 0 chr9 69516343 69516367 -54559805 + L3 LINE CR1 3604 3627 -862 3 1115 326 303 91 70 chr9 69516730 69516929 -54559243 + MIRb SINE MIR 34 236 -32 3 1115 393 216 72 10 chr9 69517234 69517405 -54558767 + L1MB2 LINE L1 5932 6120 -63 3 1115 315 0 0 0 chr9 69519169 69519204 -54556968 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1115 1011 120 56 66 chr9 69519879 69520076 -54556096 + B2_Mm2 SINE B2 1 195 0 4 1115 811 232 204 21 chr9 69521933 69522262 -54553910 - MTD LTR MaLR -16 403 1 4 1115 363 192 0 0 chr9 69522332 69522405 -54553767 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1115 827 299 31 122 chr9 69522408 69522728 -54553444 - B4 SINE B4 0 292 2 4 1115 4729 134 41 74 chr9 69522874 69523191 -54552981 + RMER21B LTR ERV1 1 319 -523 4 1115 3634 8 2 0 chr9 69523191 69523586 -54552586 - MTA_Mm LTR MaLR 0 396 1 4 1115 4729 134 41 74 chr9 69523586 69524137 -54552035 + RMER21B LTR ERV1 320 841 -1 4 1115 280 371 19 9 chr9 69524382 69524488 -54551684 + MLT1J1 LTR MaLR 160 266 -178 4 1115 252 0 0 0 chr9 69524561 69524589 -54551583 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1115 216 0 0 0 chr9 69524767 69524791 -54551381 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1115 421 240 48 9 chr9 69524791 69524896 -54551276 - PB1D9 SINE Alu -11 109 1 5 1115 261 0 0 0 chr9 69525148 69525177 -54550995 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1115 672 48 0 0 chr9 69525177 69525260 -54550912 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 1115 390 57 0 0 chr9 69525260 69525312 -54550860 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1115 447 19 0 0 chr9 69525393 69525445 -54550727 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1115 27 29 0 0 chr9 69525452 69525486 -54550686 + AT_rich Low_complexity Low_complexity 1 34 0 5 1115 1180 301 39 17 chr9 69526134 69526495 -54549677 - MTE2b LTR MaLR -7 372 4 5 1115 183 42 0 0 chr9 69527080 69527104 -54549068 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1115 901 225 62 5 chr9 69527173 69527383 -54548789 + Lx8 LINE L1 6313 6534 -939 5 1115 1034 247 41 30 chr9 69527407 69527674 -54548498 + RMER15 LTR ERVL 1 270 -305 5 1115 868 276 65 4 chr9 69527675 69527922 -54548250 + Lx8 LINE L1 6886 7147 -326 5 1115 180 0 0 0 chr9 69527958 69527978 -54548194 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1115 228 277 12 12 chr9 69528190 69528274 -54547898 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1115 485 261 17 34 chr9 69528443 69528562 -54547610 - PB1D9 SINE Alu 0 120 4 6 1115 268 274 0 152 chr9 69528477 69528576 -54547596 - MT2B LTR ERVL -362 239 156 6 1115 684 168 5 43 chr9 69530066 69530253 -54545919 + C-rich Low_complexity Low_complexity 1 180 0 6 1115 800 254 94 0 chr9 69530264 69530465 -54545707 - ID_B1 SINE B4 0 224 5 6 1115 247 267 55 55 chr9 69530475 69530602 -54545570 + ORR1C2 LTR MaLR 59 185 -199 6 1115 928 285 26 46 chr9 69530762 69531175 -54544997 - RCHARR1 DNA MER1_type -471 503 4 6 1115 267 325 51 26 chr9 69531341 69531458 -54544714 + MLT1D LTR MaLR 20 139 -366 6 1115 1587 198 96 91 chr9 69531497 69531620 -54544552 + MTD LTR MaLR 12 110 -309 6 1115 824 174 188 96 chr9 69531620 69531751 -54544421 - B3 SINE B2 0 216 53 7 1115 203 32 65 0 chr9 69531751 69531782 -54544390 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1115 1135 72 0 0 chr9 69531785 69531923 -54544249 - B1_Mus2 SINE Alu -9 138 1 7 1115 824 174 188 96 chr9 69531923 69531984 -54544188 - B3 SINE B2 -164 52 2 7 1115 1587 198 96 91 chr9 69531984 69532266 -54543906 + MTD LTR MaLR 111 419 0 6 1115 554 336 68 53 chr9 69532276 69532457 -54543715 + MLT1D LTR MaLR 143 328 -177 6 1115 2484 131 96 41 chr9 69532457 69532895 -54543277 - RMER4A LTR ERVK 0 466 5 7 1115 554 336 68 53 chr9 69532895 69533068 -54543104 + MLT1D LTR MaLR 329 502 -3 6 1115 376 19 19 19 chr9 69533079 69533133 -54543039 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 7 1115 632 246 57 0 chr9 69533133 69533200 -54542972 - Lx6 LINE L1 -28 7432 7364 7 1115 249 33 0 0 chr9 69533200 69533230 -54542942 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1115 632 246 57 0 chr9 69533230 69533337 -54542835 - Lx6 LINE L1 -97 7363 7249 7 1115 212 302 45 23 chr9 69533653 69533741 -54542431 + L2 LINE L2 2431 2520 -899 7 1115 507 278 131 0 chr9 69534012 69534125 -54542047 + B4A SINE B4 1 135 -157 7 1115 350 54 36 0 chr9 69534125 69534181 -54541991 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 7 1115 507 278 131 0 chr9 69534181 69534243 -54541929 + B4A SINE B4 136 198 -94 7 1115 770 181 6 45 chr9 69534461 69534617 -54541555 - B1_Mur4 SINE Alu 0 150 1 8 1115 636 184 103 20 chr9 69535726 69535908 -54540264 - B3 SINE B2 -12 204 5 8 1115 555 222 71 71 chr9 69536105 69536126 -54540046 + RSINE1 SINE B4 6 25 -140 8 1115 1574 244 31 17 chr9 69536126 69536246 -54539926 + MTD LTR MaLR 1 123 -296 8 1115 225 94 0 0 chr9 69536246 69536278 -54539894 + (CAT)n Simple_repeat Simple_repeat 2 33 0 8 1115 1574 244 31 17 chr9 69536278 69536570 -54539602 + MTD LTR MaLR 124 419 0 8 1115 555 222 71 71 chr9 69536570 69536703 -54539469 + RSINE1 SINE B4 26 160 -5 8 1115 381 43 0 0 chr9 69536703 69536750 -54539422 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1115 203 261 0 21 chr9 69536750 69536797 -54539375 + polypurine Low_complexity Low_complexity 2 47 0 8 1115 358 326 62 28 chr9 69537142 69537287 -54538885 + ORR1E LTR MaLR 1 150 -209 8 1115 584 261 40 65 chr9 69537299 69537500 -54538672 + B3A SINE B2 2 197 -1 8 1115 270 203 13 13 chr9 69537526 69537601 -54538571 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 8 1115 785 151 0 38 chr9 69537601 69537732 -54538440 - B1_Mus1 SINE Alu -20 128 3 9 1115 377 200 73 62 chr9 69538281 69538377 -54537795 - B3A SINE B2 -66 132 36 9 1115 559 256 119 113 chr9 69538485 69538670 -54537502 + B3A SINE B2 1 186 -9 9 1115 749 224 30 55 chr9 69538681 69538880 -54537292 + B3A SINE B2 4 197 -1 9 1115 677 248 88 29 chr9 69540050 69540254 -54535918 + B3 SINE B2 1 216 0 9 1115 739 264 87 31 chr9 69540499 69540785 -54535387 + Lx6 LINE L1 5945 6246 -804 9 1115 4353 136 59 4 chr9 69540786 69541503 -54534669 - RMER6A LTR ERVK 0 756 1 9 1115 2425 228 70 28 chr9 69541507 69541869 -54534303 + Lx6 LINE L1 6246 6800 -660 9 1115 4776 100 27 14 chr9 69541869 69542538 -54533634 + RLTR33 LTR ERVK 1 678 0 9 1115 2425 235 155 64 chr9 69542538 69543056 -54533116 + Lx6 LINE L1 6801 7419 -41 9 1115 611 212 18 0 chr9 69543065 69543178 -54532994 + B1_Mur1 SINE Alu 15 129 -20 9 1115 916 134 199 21 chr9 69543865 69544056 -54532116 + URR1B DNA MER1_type 1 225 0 9 1115 262 329 0 45 chr9 69544088 69544177 -54531995 + MER34A LTR ERV1 104 188 -383 1 1115 308 310 62 8 chr9 69544210 69544340 -54531832 + MER34A LTR ERV1 271 407 -164 1 1115 521 176 0 0 chr9 69544419 69544504 -54531668 - B3A SINE B2 -113 85 1 1 1115 281 230 120 13 chr9 69544506 69544581 -54531591 + MER34A LTR ERV1 486 568 -3 1 1115 26 30 0 0 chr9 69544667 69544700 -54531472 + AT_rich Low_complexity Low_complexity 1 33 0 1 1115 258 247 116 102 chr9 69545059 69545334 -54530838 + B4 SINE B4 3 281 -11 1 1115 361 326 150 36 chr9 69545714 69545988 -54530184 - ORR1E LTR MaLR -23 336 32 1 1115 678 272 149 47 chr9 69547252 69547507 -54528665 + B4 SINE B4 2 282 -10 1 1115 290 67 22 0 chr9 69547527 69547572 -54528600 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1115 223 296 82 35 chr9 69547658 69547786 -54528386 + MIRc SINE MIR 35 166 -102 1 1115 414 0 0 0 chr9 69548236 69548282 -54527890 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1115 396 0 0 0 chr9 69548282 69548325 -54527847 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1115 1071 264 21 7 chr9 69548962 69549241 -54526931 + B4A SINE B4 1 283 -9 1 1115 270 260 27 14 chr9 69549378 69549452 -54526720 - MTEa LTR MaLR 0 379 305 1 1115 603 102 0 0 chr9 69549722 69549810 -54526362 + (GGGGA)n Simple_repeat Simple_repeat 3 90 0 1 1115 513 204 0 0 chr9 69549817 69549974 -54526198 + (TG)n Simple_repeat Simple_repeat 1 157 0 1 1115 292 170 35 46 chr9 69550722 69550848 -54525324 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 1 1115 3336 48 0 15 chr9 69550848 69551254 -54524918 + MTB LTR MaLR 1 400 0 1 1115 292 170 35 46 chr9 69551254 69551300 -54524872 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 1 1115 372 299 102 84 chr9 69551549 69551823 -54524349 + B4A SINE B4 5 283 -9 1 1115 809 250 23 18 chr9 69551918 69552138 -54524034 + ID_B1 SINE B4 2 222 -2 1 1115 21 0 0 0 chr9 69553274 69553295 -54522877 + AT_rich Low_complexity Low_complexity 1 21 0 1 1115 293 314 124 29 chr9 69554749 69554854 -54521318 - B4 SINE B4 -173 119 5 1 1115 320 362 32 5 chr9 69554964 69555150 -54521022 - RMER15 LTR ERVL -5 570 380 1 1115 378 298 24 16 chr9 69555480 69555603 -54520569 - Lx8 LINE L1 -434 7039 6916 1 1115 1278 250 102 8 chr9 69555937 69556320 -54519852 - MTD LTR MaLR 0 419 1 1 1115 297 0 0 0 chr9 69556574 69556607 -54519565 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1115 315 269 12 37 chr9 69556705 69556786 -54519386 - B4A SINE B4 -96 196 118 1 1115 309 135 0 0 chr9 69556829 69556881 -54519291 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1115 1785 261 26 91 chr9 69556881 69557309 -54518863 + L1_Rod LINE L1 3881 4295 -1552 1 1115 1216 68 0 0 chr9 69557309 69557456 -54518716 - B1_Mm SINE Alu 0 147 1 1 1115 1785 261 26 91 chr9 69557456 69557823 -54518349 + L1_Rod LINE L1 4296 4625 -1222 1 1115 8073 71 13 5 chr9 69557921 69559617 -54516555 - L1VL2 LINE L1 -1586 2029 318 1 1115 359 267 0 0 chr9 69559638 69559724 -54516448 - B4 SINE B4 -205 87 2 1 1115 774 154 0 154 chr9 69559811 69559980 -54516192 - B1_Mus1 SINE Alu -1 147 5 1 1115 595 262 79 56 chr9 69559988 69560202 -54515970 - ID_B1 SINE B4 -4 220 2 1 1115 568 207 8 17 chr9 69560397 69560515 -54515657 - B1_Mur1 SINE Alu -1 148 32 1 1115 218 105 0 26 chr9 69562541 69562580 -54513592 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1115 339 256 85 0 chr9 69564953 69565035 -54511137 + ID4_ SINE ID 8 95 -57 1 1115 953 128 166 26 chr9 69565042 69565235 -54510937 - URR1B DNA MER1_type -4 221 2 1 1115 986 208 9 62 chr9 69565302 69565528 -54510644 + B3 SINE B2 3 216 0 1 1115 207 0 0 0 chr9 69565561 69565584 -54510588 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1 1115 702 35 0 0 chr9 69565586 69565671 -54510501 + (GGAAA)n Simple_repeat Simple_repeat 4 88 0 1 1115 718 261 89 75 chr9 69565873 69566154 -54510018 - B4 SINE B4 -3 289 5 1 1115 234 62 0 0 chr9 69566907 69566939 -54509233 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1115 541 289 31 43 chr9 69566945 69567108 -54509064 - ID_B1 SINE B4 -13 211 51 1 1115 306 215 48 20 chr9 69567114 69567261 -54508911 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 1 1115 437 151 12 0 chr9 69567261 69567347 -54508825 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 1 1115 374 0 0 21 chr9 69567390 69567437 -54508735 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1115 402 79 0 0 chr9 69569314 69569377 -54506795 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1115 303 71 0 0 chr9 69569374 69569416 -54506756 + (GGA)n Simple_repeat Simple_repeat 2 43 0 1 1115 347 266 53 0 chr9 69569422 69569516 -54506656 - B4A SINE B4 -8 284 186 1 1115 714 302 121 63 chr9 69571124 69571537 -54504635 + MLT1F LTR MaLR 7 443 -105 1 1115 248 231 59 44 chr9 69571903 69571971 -54504201 + BC1_Mm scRNA scRNA 13 81 -71 1 1115 970 250 5 0 chr9 69571912 69572100 -54504072 + B4A SINE B4 27 215 -77 1 1115 1330 194 190 3 chr9 69572100 69572442 -54503730 - MTD LTR MaLR -8 411 6 1 1115 882 291 44 80 chr9 69572575 69572635 -54503537 + ORR1E LTR MaLR 1 55 -304 1 1115 2777 136 19 5 chr9 69572635 69573049 -54503123 - MTC LTR MaLR -1 420 1 1 1115 882 280 28 57 chr9 69573049 69573363 -54502809 + ORR1E LTR MaLR 56 379 0 1 1115 243 276 34 11 chr9 69573373 69573461 -54502711 - MTD LTR MaLR 0 419 330 1 1115 275 256 30 84 chr9 69573455 69573576 -54502596 - MTD LTR MaLR -268 111 1 1 1115 2412 77 12 58 chr9 69573626 69573969 -54502203 + ORR1A2 LTR MaLR 1 327 0 1 1115 893 192 44 30 chr9 69574206 69574412 -54501760 + B3A SINE B2 11 214 -2 1 1115 441 0 0 0 chr9 69574446 69574495 -54501677 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1115 1349 253 52 28 chr9 69575109 69575471 -54500701 - MTD LTR MaLR -14 405 35 1 1115 1218 169 34 0 chr9 69575473 69575680 -54500492 + URR1A DNA MER1_type 1 214 -12 1 1115 593 250 58 85 chr9 69576260 69576448 -54499724 + B3A SINE B2 1 183 -15 1 1115 403 305 0 15 chr9 69576448 69576578 -54499594 + (CACG)n Simple_repeat Simple_repeat 4 131 0 1 1115 406 301 55 35 chr9 69577115 69577315 -54498857 - RLTR15 LTR ERVK -39 320 117 1 1115 914 272 149 101 chr9 69577456 69578060 -54498112 - RMER13A LTR ERVK -214 646 14 1 1115 270 263 78 29 chr9 69578081 69578183 -54497989 - RLTR12B LTR ERVK -311 217 111 1 1115 526 291 298 16 chr9 69578224 69578532 -54497640 - Charlie5 DNA MER1_type -1752 872 478 1 1115 515 268 32 44 chr9 69578532 69578701 -54497471 + MTE2a LTR MaLR 1 165 -214 1 1115 495 233 11 0 chr9 69578933 69579023 -54497149 + MTE2a LTR MaLR 127 217 -162 1 1115 515 182 0 43 chr9 69579421 69579536 -54496636 + ID_B1 SINE B4 75 176 -48 1 1115 1239 87 0 0 chr9 69579900 69580212 -54495960 + (GA)n Simple_repeat Simple_repeat 1 312 0 1 1115 199 305 62 10 chr9 69580549 69580645 -54495527 + MIRb SINE MIR 96 196 -72 1 1115 2197 125 114 0 chr9 69580970 69581322 -54494850 + ORR1B1 LTR MaLR 1 392 -2 1 1115 284 294 63 49 chr9 69581328 69581471 -54494701 - MIRb SINE MIR -33 235 91 1 1115 412 289 38 70 chr9 69581475 69581661 -54494511 + MIRc SINE MIR 22 201 -67 1 1115 621 286 16 27 chr9 69583438 69583621 -54492551 + B3A SINE B2 1 181 -17 1 1115 34 0 0 0 chr9 69583638 69583672 -54492500 + AT_rich Low_complexity Low_complexity 1 34 0 1 1115 1222 108 11 26 chr9 69583676 69583867 -54492305 + B2_Mm2 SINE B2 2 189 -6 1 1115 576 200 35 0 chr9 69584145 69584260 -54491912 - ORR1D1 LTR MaLR -10 364 246 1 1115 871 264 25 10 chr9 69584344 69584507 -54491665 + ID_B1 SINE B4 3 170 -54 1 1115 684 318 122 47 chr9 69584507 69584825 -54491347 - MT2A LTR ERVL -2 531 193 1 1115 222 37 0 0 chr9 69584825 69584852 -54491320 + (CAA)n Simple_repeat Simple_repeat 3 29 0 1 1115 684 318 122 47 chr9 69584852 69585027 -54491145 - MT2A LTR ERVL -341 192 2 1 1115 871 264 25 10 chr9 69585027 69585062 -54491110 + ID_B1 SINE B4 171 203 -21 1 1115 369 62 0 0 chr9 69585071 69585119 -54491053 + (AATAG)n Simple_repeat Simple_repeat 1 48 0 1 1115 513 0 0 0 chr9 69585145 69585202 -54490970 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1 1115 311 156 0 0 chr9 69585274 69585319 -54490853 - ORR1D1 LTR MaLR -290 69 25 1 1115 744 256 0 6 chr9 69585412 69585569 -54490603 + RSINE1 SINE B4 1 156 -9 1 1115 2353 179 62 16 chr9 69585663 69586167 -54490005 + RLTR11A2 LTR ERVK 1 527 0 1 1115 293 291 12 12 chr9 69586461 69586541 -54489631 + B4A SINE B4 2 81 -211 1 1115 204 163 0 0 chr9 69586561 69586604 -54489568 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1115 995 51 7 0 chr9 69586680 69586818 -54489354 + (TC)n Simple_repeat Simple_repeat 2 140 0 1 1115 863 129 0 43 chr9 69586818 69586956 -54489216 - B1_Mur4 SINE Alu -4 146 15 1 1115 266 294 15 0 chr9 69586963 69587031 -54489141 + B4 SINE B4 201 269 -23 1 1115 405 0 0 0 chr9 69587031 69587076 -54489096 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1115 459 254 68 27 chr9 69587343 69587489 -54488683 + RSINE1 SINE B4 4 155 -10 1 1115 768 216 0 20 chr9 69588224 69588375 -54487797 + B3 SINE B2 1 148 -68 1 1115 285 89 0 0 chr9 69588390 69588435 -54487737 + (TAG)n Simple_repeat Simple_repeat 3 47 0 1 1115 589 282 38 13 chr9 69588822 69588980 -54487192 + RSINE1 SINE B4 4 165 0 1 1115 686 257 53 5 chr9 69589842 69590030 -54486142 - MTE2a LTR MaLR 0 379 183 1 1115 1388 211 170 11 chr9 69590459 69590814 -54485358 + MTD LTR MaLR 3 383 -36 1 1115 868 244 94 10 chr9 69590848 69591051 -54485121 + ID_B1 SINE B4 2 221 -3 1 1115 615 294 0 63 chr9 69591138 69591245 -54484927 + RSINE1 SINE B4 3 105 -60 1 1115 1620 133 169 0 chr9 69591245 69591523 -54484649 + ORR1A3 LTR MaLR 2 326 0 1 1115 615 294 0 63 chr9 69591523 69591589 -54484583 + RSINE1 SINE B4 106 165 0 1 1115 613 303 48 68 chr9 69592205 69592605 -54483567 - L1ME1 LINE L1 -3 6176 5785 1 1115 242 161 0 162 chr9 69592615 69592689 -54483483 + MTE2a LTR MaLR 1 62 -317 1 1115 416 229 0 12 chr9 69592753 69592837 -54483335 + RSINE1 SINE B4 83 165 0 2 1115 199 371 69 14 chr9 69592904 69593049 -54483123 + MIR SINE MIR 82 234 -28 2 1115 896 155 236 0 chr9 69593104 69593278 -54482894 - B3 SINE B2 -1 215 1 2 1115 341 43 21 0 chr9 69593891 69593938 -54482234 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1115 427 253 215 34 chr9 69593939 69594167 -54482005 - B4A SINE B4 -21 271 3 2 1115 24 32 0 0 chr9 69594194 69594225 -54481947 + AT_rich Low_complexity Low_complexity 1 31 0 2 1115 628 256 15 0 chr9 69594225 69594362 -54481810 - RSINE1 SINE B4 -4 161 23 2 1115 1043 100 0 0 chr9 69595102 69595242 -54480930 + B1_Mus1 SINE Alu 8 147 -1 2 1115 830 274 14 0 chr9 69595269 69595484 -54480688 + ID_B1 SINE B4 3 220 -4 2 1115 576 272 33 99 chr9 69595494 69595706 -54480466 + B3A SINE B2 1 198 0 2 1115 700 183 0 90 chr9 69595987 69596143 -54480029 + B3A SINE B2 57 198 0 2 1115 800 139 0 0 chr9 69596198 69596313 -54479859 - B1_Mur4 SINE Alu -20 130 16 2 1115 324 276 55 45 chr9 69596222 69596315 -54479857 - B4A SINE B4 -98 194 99 2 1115 207 0 0 0 chr9 69596315 69596338 -54479834 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2 1115 324 276 55 45 chr9 69596338 69596354 -54479818 - B4A SINE B4 -194 98 84 2 1115 444 111 0 0 chr9 69596766 69596847 -54479325 + (TC)n Simple_repeat Simple_repeat 1 81 0 2 1115 453 19 0 0 chr9 69596848 69596902 -54479270 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1115 412 308 43 0 chr9 69596977 69597094 -54479078 + B1F SINE Alu 18 139 -10 2 1115 218 262 0 0 chr9 69597122 69597164 -54479008 + polypurine Low_complexity Low_complexity 4 45 0 2 1115 1974 109 52 55 chr9 69597534 69597863 -54478309 - ORR1A4 LTR MaLR -1 328 1 2 1115 268 342 32 71 chr9 69597895 69598178 -54477994 + YREP_Mm Unknown Unknown 36 307 -1505 2 1115 783 214 0 0 chr9 69598045 69598185 -54477987 - ID_B1 SINE B4 -2 222 83 2 1115 1064 157 0 22 chr9 69598254 69598436 -54477736 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 2 1115 470 238 29 19 chr9 69598731 69598834 -54477338 - B3A SINE B2 -35 163 60 2 1115 323 136 72 43 chr9 69599124 69599193 -54476979 - ID4_ SINE ID -11 72 2 2 1116 279 305 44 31 chr9 69599349 69599508 -54476664 - RSINE1 SINE B4 0 165 5 2 1116 261 0 0 0 chr9 69599677 69599706 -54476466 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1116 216 0 0 0 chr9 69600289 69600313 -54475859 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1116 515 219 29 0 chr9 69601223 69601328 -54474844 + B3A SINE B2 1 108 -90 2 1116 204 125 0 0 chr9 69603807 69603839 -54472333 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1116 317 24 0 23 chr9 69604418 69604461 -54471711 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1116 243 0 0 0 chr9 69605762 69605789 -54470383 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1116 244 85 0 60 chr9 69606023 69606073 -54470099 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 2 1116 518 0 0 16 chr9 69606692 69606755 -54469417 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2 1116 253 299 0 0 chr9 69608771 69608838 -54467334 + G-rich Low_complexity Low_complexity 2 68 0 2 1116 22 35 0 0 chr9 69609352 69609381 -54466791 + AT_rich Low_complexity Low_complexity 1 29 0 2 1116 248 236 0 0 chr9 69609863 69609918 -54466254 + (CAT)n Simple_repeat Simple_repeat 2 56 0 2 1116 537 16 0 0 chr9 69610240 69610302 -54465870 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1116 261 0 0 0 chr9 69612067 69612096 -54464076 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1116 225 0 0 0 chr9 69615106 69615131 -54461041 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1116 333 0 0 0 chr9 69615228 69615265 -54460907 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1116 524 271 25 0 chr9 69620800 69620918 -54455254 - RSINE1 SINE B4 -32 133 13 2 1116 495 118 0 0 chr9 69620918 69620994 -54455178 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1116 292 103 35 0 chr9 69621198 69621256 -54454916 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 2 1116 279 81 0 0 chr9 69621475 69621512 -54454660 - B1_Mur3 SINE Alu -32 117 81 2 1116 190 210 0 46 chr9 69621697 69621762 -54454410 + GA-rich Low_complexity Low_complexity 3 64 0 2 1116 252 86 0 0 chr9 69622362 69622397 -54453775 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1116 686 265 32 5 chr9 69622397 69622583 -54453589 - B3 SINE B2 -20 196 6 2 1116 320 333 24 0 chr9 69622667 69622793 -54453379 + MER2 DNA MER2_type 133 261 -84 2 1116 369 0 0 0 chr9 69622837 69622878 -54453294 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1116 445 76 25 0 chr9 69622878 69622956 -54453216 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1116 644 247 12 42 chr9 69622970 69623135 -54453037 - B3A SINE B2 -37 161 2 2 1116 833 144 7 0 chr9 69623169 69623308 -54452864 - B1_Mur2 SINE Alu -3 146 7 2 1116 250 226 48 16 chr9 69623318 69623381 -54452791 + MER2 DNA MER2_type 258 322 -23 2 1116 426 259 150 43 chr9 69623559 69623793 -54452379 + Charlie1b DNA MER1_type 134 392 -131 2 1116 655 227 0 0 chr9 69623801 69623929 -54452243 - B1_Mur1 SINE Alu -5 144 17 2 1116 198 0 0 0 chr9 69623954 69623976 -54452196 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 2 1116 235 194 47 31 chr9 69623978 69624042 -54452130 + ID SINE ID 4 68 -156 2 1116 300 329 120 50 chr9 69624129 69624487 -54451685 - L1MEc LINE L1 -4363 2037 1655 2 1116 252 0 0 0 chr9 69624489 69624517 -54451655 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1116 465 206 87 0 chr9 69624560 69624652 -54451520 + B3 SINE B2 31 130 -86 2 1116 228 67 0 0 chr9 69624665 69624695 -54451477 + (TAA)n Simple_repeat Simple_repeat 3 32 0 2 1116 207 175 0 0 chr9 69624859 69624916 -54451256 + CT-rich Low_complexity Low_complexity 2 58 0 2 1116 627 288 6 12 chr9 69624928 69625093 -54451079 - RSINE1 SINE B4 0 165 2 2 1116 245 261 101 0 chr9 69625328 69625447 -54450725 - L1MEc LINE L1 -5253 1147 1017 2 1116 485 144 0 35 chr9 69625584 69625670 -54450502 - MTEb LTR MaLR -2 377 295 2 1116 378 0 0 0 chr9 69626104 69626146 -54450026 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 2 1116 270 125 0 0 chr9 69626249 69626297 -54449875 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1116 542 280 143 8 chr9 69626359 69626625 -54449547 - MT2A LTR ERVL -143 390 89 2 1116 283 363 81 0 chr9 69626579 69626703 -54449469 - MTE2a LTR MaLR -245 134 1 2 1116 240 35 0 0 chr9 69626936 69626965 -54449207 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1116 900 146 15 84 chr9 69626968 69627170 -54449002 + B2_Mm2 SINE B2 1 188 -7 2 1116 554 230 0 0 chr9 69627177 69627277 -54448895 + B3 SINE B2 5 104 -112 2 1116 871 239 54 35 chr9 69627288 69627604 -54448568 - RLTR15 LTR ERVK -17 342 21 2 1116 469 301 55 35 chr9 69627696 69627896 -54448276 - B4A SINE B4 -78 214 11 2 1116 351 0 0 0 chr9 69628570 69628609 -54447563 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2 1116 526 350 12 6 chr9 69628655 69628816 -54447356 + RSINE1 SINE B4 2 163 -2 2 1116 333 145 0 0 chr9 69628829 69628905 -54447267 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1116 693 36 0 0 chr9 69628960 69629044 -54447128 + (TTC)n Simple_repeat Simple_repeat 1 84 0 2 1116 1254 86 40 6 chr9 69629044 69629219 -54446953 - B2_Mm2 SINE B2 -14 181 1 2 1116 721 234 28 17 chr9 69629522 69629700 -54446472 - B3 SINE B2 -9 207 28 2 1116 180 0 0 0 chr9 69630448 69630468 -54445704 + (GTGTG)n Simple_repeat Simple_repeat 3 22 0 2 1116 487 216 53 46 chr9 69630469 69630600 -54445572 + B1_Mus2 SINE Alu 16 147 0 2 1116 283 113 16 16 chr9 69630689 69630752 -54445420 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1116 699 265 109 19 chr9 69630757 69631022 -54445150 - B4A SINE B4 -3 289 1 2 1116 369 0 0 0 chr9 69631508 69631549 -54444623 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1116 349 242 33 0 chr9 69631561 69631652 -54444520 + U6 snRNA snRNA 1 94 -13 2 1116 609 110 0 0 chr9 69631744 69631835 -54444337 + (TC)n Simple_repeat Simple_repeat 2 92 0 2 1116 654 283 92 0 chr9 69631897 69632081 -54444091 - B4A SINE B4 -90 202 2 2 1116 408 88 0 0 chr9 69632084 69632141 -54444031 + (CATA)n Simple_repeat Simple_repeat 4 60 0 2 1116 367 229 0 0 chr9 69632142 69632203 -54443969 + B1F1 SINE Alu 1 61 -88 2 1116 275 359 143 19 chr9 69632613 69632823 -54443349 - LTR33A_ LTR ERVL -212 319 84 2 1116 324 0 0 0 chr9 69633251 69633287 -54442885 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1116 468 0 0 0 chr9 69633287 69633338 -54442834 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1116 625 245 103 70 chr9 69633386 69633658 -54442514 - B4A SINE B4 -10 282 2 2 1116 468 0 0 0 chr9 69634738 69634790 -54441382 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1116 342 0 0 0 chr9 69634790 69634827 -54441345 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1116 290 310 74 104 chr9 69634854 69635153 -54441019 - B4 SINE B4 -2 290 1 2 1116 861 266 53 18 chr9 69635812 69636094 -54440078 + ORR1E LTR MaLR 31 341 -38 2 1116 380 252 131 0 chr9 69636461 69636560 -54439612 - PB1D10 SINE Alu -1 116 5 2 1116 336 252 35 69 chr9 69637338 69637483 -54438689 - MTEb LTR MaLR -164 215 76 2 1116 791 122 8 15 chr9 69637500 69637633 -54438539 - B1_Mur4 SINE Alu 0 150 19 2 1116 297 295 63 77 chr9 69637509 69637652 -54438520 - B4A SINE B4 -72 220 80 2 1116 811 227 19 37 chr9 69637694 69637909 -54438263 - B3 SINE B2 -4 212 2 3 1116 222 37 0 0 chr9 69638062 69638089 -54438083 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1116 1241 42 0 0 chr9 69638092 69638235 -54437937 - B1_Mus1 SINE Alu -5 143 1 3 1116 347 248 138 13 chr9 69638279 69638438 -54437734 - L1MEe LINE L1 -4357 497 319 3 1116 597 286 34 19 chr9 69638460 69638667 -54437505 + B3 SINE B2 5 214 -2 3 1116 21 0 0 0 chr9 69638681 69638702 -54437470 + AT_rich Low_complexity Low_complexity 1 21 0 3 1116 510 96 0 0 chr9 69638729 69638802 -54437370 + (GGGA)n Simple_repeat Simple_repeat 2 74 0 3 1116 1381 87 22 0 chr9 69639873 69640057 -54436115 + B2_Mm2 SINE B2 1 188 -7 3 1116 478 301 81 16 chr9 69640995 69641181 -54434991 - B3A SINE B2 0 198 1 3 1116 258 244 12 60 chr9 69641218 69641301 -54434871 - L1M2 LINE L1 -1863 4280 4202 3 1116 235 280 149 27 chr9 69641338 69641407 -54434765 - L1M5 LINE L1 -1564 4582 4508 3 1116 202 0 59 29 chr9 69641407 69641441 -54434731 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1116 235 280 149 27 chr9 69641441 69641672 -54434500 - L1M5 LINE L1 -1639 4507 4245 3 1116 274 164 109 0 chr9 69641968 69642023 -54434149 - Lx8 LINE L1 -2 7471 7411 3 1116 343 192 0 60 chr9 69642061 69642144 -54434028 - HAL1-3A_ME LINE L1 -805 2053 1976 3 1116 451 228 14 0 chr9 69642158 69642506 -54433666 + (TG)n Simple_repeat Simple_repeat 1 353 0 3 1116 389 287 82 0 chr9 69642586 69642708 -54433464 - Lx8 LINE L1 -378 7095 6964 3 1116 305 261 14 0 chr9 69642725 69642794 -54433378 - Lx8 LINE L1 -571 6902 6833 3 1116 21 36 0 0 chr9 69642893 69642921 -54433251 + AT_rich Low_complexity Low_complexity 1 28 0 3 1116 855 186 221 24 chr9 69643248 69643501 -54432671 - MTD LTR MaLR 0 419 117 3 1116 357 341 17 11 chr9 69644411 69644589 -54431583 - Arthur1B DNA Tip100 -1046 179 1 3 1116 863 197 90 15 chr9 69644922 69645123 -54431049 - B3 SINE B2 0 216 1 3 1116 183 129 0 0 chr9 69645147 69645178 -54430994 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1116 430 247 71 44 chr9 69645361 69645543 -54430629 + MLT2B4 LTR ERVL 1 187 -227 3 1116 711 298 78 125 chr9 69645618 69646043 -54430129 + MTD LTR MaLR 1 405 -14 3 1116 422 339 41 78 chr9 69646077 69646371 -54429801 + ORR1E LTR MaLR 72 354 -5 3 1116 679 272 103 19 chr9 69646392 69646654 -54429518 + MLT2B4 LTR ERVL 219 502 -54 3 1116 459 92 0 0 chr9 69646654 69646719 -54429453 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 1116 673 220 143 0 chr9 69646790 69646958 -54429214 - B3A SINE B2 -6 192 1 3 1116 9500 108 50 9 chr9 69647356 69647634 -54428538 - Lx4B LINE L1 -7 7051 6765 3 1116 342 0 0 0 chr9 69647634 69647672 -54428500 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1116 9500 118 66 14 chr9 69647672 69649789 -54426383 - Lx4B LINE L1 -294 6764 4520 3 1116 3317 111 22 44 chr9 69649788 69650328 -54425844 + Lx4B LINE L1 3997 4524 -1353 3 1116 392 289 8 42 chr9 69651119 69651238 -54424934 + RSINE1 SINE B4 38 152 -13 3 1116 423 0 0 0 chr9 69651246 69651293 -54424879 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1116 799 303 55 63 chr9 69651470 69651836 -54424336 + MLT1A0 LTR MaLR 1 363 -2 3 1116 514 266 9 0 chr9 69651903 69652012 -54424160 - PB1D10 SINE Alu -7 110 1 3 1116 772 261 117 92 chr9 69652653 69653173 -54422999 - MT2A LTR ERVL 0 533 1 3 1116 1182 75 0 7 chr9 69653671 69653819 -54422353 + B1_Mm SINE Alu 1 147 0 3 1116 547 118 0 35 chr9 69653819 69653933 -54422239 + A-rich Low_complexity Low_complexity 1 110 0 3 1116 646 242 156 62 chr9 69654056 69654169 -54422003 - Lx8 LINE L1 -2 7471 7364 3 1116 186 43 0 0 chr9 69654169 69654192 -54421980 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 3 1116 696 177 81 0 chr9 69654194 69654318 -54421854 - B1_Mur2 SINE Alu -15 134 1 3 1116 646 242 156 62 chr9 69654318 69654509 -54421663 - Lx8 LINE L1 -110 7363 7135 3 1116 333 247 25 0 chr9 69654757 69654838 -54421334 - ID_B1 SINE B4 -78 146 64 3 1116 369 305 166 14 chr9 69654841 69655130 -54421042 - L1ME1 LINE L1 -264 5915 5583 3 1116 998 217 14 5 chr9 69655131 69655339 -54420833 + B3 SINE B2 2 211 -5 3 1116 723 313 65 28 chr9 69655387 69655847 -54420325 - L1M2 LINE L1 -4239 2610 2134 3 1116 270 167 0 0 chr9 69655989 69656049 -54420123 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 3 1116 210 236 0 0 chr9 69656049 69656104 -54420068 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1116 469 263 101 43 chr9 69656211 69656418 -54419754 - B4A SINE B4 -67 225 7 3 1116 1345 96 0 5 chr9 69656539 69656727 -54419445 + B2_Mm2 SINE B2 4 190 -5 3 1116 541 269 163 23 chr9 69656765 69657159 -54419013 - L1ME1 LINE L1 -904 5242 4788 3 1116 557 213 0 30 chr9 69657162 69657293 -54418879 - MTE2b LTR MaLR -2 377 251 3 1116 648 145 0 0 chr9 69657295 69657412 -54418760 + (TG)n Simple_repeat Simple_repeat 1 117 0 3 1116 529 306 38 34 chr9 69657641 69657932 -54418240 + B4A SINE B4 1 292 0 3 1116 480 127 73 0 chr9 69657932 69658097 -54418075 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 1116 620 128 43 24 chr9 69658126 69658391 -54417781 + (CA)n Simple_repeat Simple_repeat 1 270 0 3 1116 340 145 30 30 chr9 69658413 69658548 -54417624 + (CA)n Simple_repeat Simple_repeat 1 135 0 3 1116 331 106 0 0 chr9 69658549 69658596 -54417576 + HAL1-3A_ME LINE L1 1977 2023 -835 3 1116 306 0 0 0 chr9 69659373 69659407 -54416765 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1116 861 158 0 0 chr9 69660617 69660794 -54415378 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 1116 384 295 201 0 chr9 69661636 69661775 -54414397 + B3A SINE B2 1 167 -31 3 1116 276 265 0 0 chr9 69661785 69661883 -54414289 + CT-rich Low_complexity Low_complexity 1 98 0 3 1116 351 0 0 0 chr9 69661982 69662021 -54414151 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1116 387 73 0 0 chr9 69662021 69662075 -54414097 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1116 424 287 0 0 chr9 69662106 69662207 -54413965 + PB1D10 SINE Alu 1 101 -16 3 1116 264 300 174 15 chr9 69662574 69662706 -54413466 - L1M5 LINE L1 -469 5655 5503 3 1116 1209 206 45 42 chr9 69662993 69663281 -54412891 + MTE2a LTR MaLR 72 360 -19 3 1116 288 320 72 0 chr9 69663397 69663522 -54412650 + MIRb SINE MIR 17 150 -118 3 1116 748 236 17 15 chr9 69663579 69663761 -54412411 + B3A SINE B2 1 176 -19 3 1116 357 82 0 0 chr9 69663761 69663810 -54412362 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1116 509 213 11 0 chr9 69664121 69664215 -54411957 - B1F SINE Alu -27 122 28 3 1116 214 293 130 10 chr9 69664575 69664782 -54411390 + L2b LINE L2 2358 2589 -830 3 1116 287 349 67 85 chr9 69665060 69665448 -54410724 + L2b LINE L2 2953 3333 -42 3 1116 1041 113 0 0 chr9 69665473 69665632 -54410540 + (TGGA)n Simple_repeat Simple_repeat 3 161 0 3 1116 709 224 7 0 chr9 69666089 69666236 -54409936 + B1_Mur3 SINE Alu 2 149 0 3 1116 180 0 0 0 chr9 69666245 69666265 -54409907 + (ATG)n Simple_repeat Simple_repeat 2 21 0 3 1116 306 277 9 47 chr9 69667787 69667893 -54408279 - Lx8 LINE L1 -6 7467 7366 3 1116 225 211 0 0 chr9 69667905 69667957 -54408215 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 3 1116 310 140 18 0 chr9 69667989 69668046 -54408126 - B4 SINE B4 -232 60 3 3 1116 769 199 49 14 chr9 69668417 69668560 -54407612 + B1_Mur3 SINE Alu 1 148 -1 3 1116 444 37 0 0 chr9 69668560 69668614 -54407558 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1116 853 171 0 11 chr9 69668610 69668787 -54407385 + GA-rich Low_complexity Low_complexity 5 179 0 3 1116 360 287 43 9 chr9 69669586 69669702 -54406470 - ID_B1 SINE B4 -24 200 81 3 1116 456 19 0 0 chr9 69670090 69670143 -54406029 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1116 414 0 0 0 chr9 69670146 69670192 -54405980 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1116 411 38 0 0 chr9 69670260 69670313 -54405859 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1116 315 313 44 44 chr9 69670349 69670398 -54405774 - B4A SINE B4 -155 137 86 3 1116 225 0 0 0 chr9 69670398 69670423 -54405749 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1116 315 313 44 44 chr9 69670423 69670510 -54405662 - B4A SINE B4 -207 85 2 3 1116 1254 44 0 0 chr9 69671616 69671775 -54404397 + B2_Mm1a SINE B2 2 160 -33 3 1116 258 32 0 0 chr9 69671775 69671806 -54404366 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 1116 544 266 111 17 chr9 69671806 69671826 -54404346 + B3A SINE B2 178 197 -1 3 1116 346 218 108 113 chr9 69673254 69673283 -54402889 - B2_Mm2 SINE B2 -5 190 166 3 1116 579 29 0 0 chr9 69673283 69673352 -54402820 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1116 492 218 108 113 chr9 69673352 69673508 -54402664 - B3A SINE B2 -30 165 6 3 1116 406 270 74 179 chr9 69673498 69673755 -54402417 - B4A SINE B4 -56 236 7 3 1116 644 284 39 55 chr9 69674508 69674823 -54401349 - B4 SINE B4 -21 271 2 3 1116 540 205 9 0 chr9 69675252 69675364 -54400808 - RSINE1 SINE B4 -36 129 17 3 1116 402 21 0 0 chr9 69675758 69675805 -54400367 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 3 1116 324 0 0 0 chr9 69678902 69678938 -54397234 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1116 1350 215 36 103 chr9 69679146 69679592 -54396580 - MTD LTR MaLR -14 405 1 3 1116 183 80 0 0 chr9 69680297 69680322 -54395850 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1116 483 130 0 0 chr9 69680494 69680571 -54395601 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 3 1116 294 29 0 0 chr9 69680705 69680740 -54395432 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1116 948 248 5 5 chr9 69680808 69681026 -54395146 - B4 SINE B4 -5 287 67 3 1116 566 259 65 60 chr9 69682472 69682673 -54393499 + B4A SINE B4 82 283 -9 3 1116 578 319 62 39 chr9 69683010 69683346 -54392826 + ORR1E LTR MaLR 9 352 -7 3 1116 931 262 5 5 chr9 69683386 69683597 -54392575 + B3 SINE B2 1 211 -5 3 1116 352 174 35 0 chr9 69683975 69684061 -54392111 + GA-rich Low_complexity Low_complexity 3 91 0 3 1116 251 257 72 54 chr9 69684192 69684234 -54391938 - B3 SINE B2 -102 114 2 3 1116 328 191 0 14 chr9 69684234 69684303 -54391869 - B4A SINE B4 -223 69 2 4 1116 189 0 0 0 chr9 69685050 69685071 -54391101 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 1116 843 285 10 0 chr9 69685246 69685446 -54390726 + ID_B1 SINE B4 2 203 -21 4 1116 383 278 33 42 chr9 69685346 69685466 -54390706 + B1F SINE Alu 22 140 -9 4 1116 234 0 0 0 chr9 69685627 69685653 -54390519 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1116 234 291 0 25 chr9 69685858 69685939 -54390233 - MER5A1 DNA MER1_type -35 131 53 4 1116 222 37 0 0 chr9 69685951 69685978 -54390194 + (CTG)n Simple_repeat Simple_repeat 3 29 0 4 1116 402 304 59 27 chr9 69687465 69687651 -54388521 + B3A SINE B2 2 193 -5 4 1116 220 315 14 0 chr9 69687893 69687966 -54388206 + MIRc SINE MIR 129 202 -66 4 1116 665 239 4 124 chr9 69688345 69688570 -54387602 - B3A SINE B2 0 198 1 4 1116 561 196 281 28 chr9 69689101 69689279 -54386893 + ID_B1 SINE B4 2 224 0 4 1116 432 0 0 0 chr9 69689326 69689374 -54386798 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1116 468 186 0 0 chr9 69690179 69690297 -54385875 + CT-rich Low_complexity Low_complexity 2 119 0 4 1116 434 283 8 0 chr9 69690408 69690528 -54385644 - ID_B1 SINE B4 -99 125 5 4 1116 287 270 16 0 chr9 69690559 69690622 -54385550 + ID_B1 SINE B4 80 143 -81 4 1116 333 237 25 38 chr9 69690566 69690645 -54385527 + B1F1 SINE Alu 7 84 -65 4 1116 330 94 0 19 chr9 69691216 69691270 -54384902 + Lx7 LINE L1 7644 7696 0 4 1116 252 220 0 0 chr9 69693529 69693588 -54382584 - MIRb SINE MIR -91 177 119 4 1116 451 285 6 42 chr9 69693848 69694013 -54382159 + CT-rich Low_complexity Low_complexity 4 162 0 4 1116 853 278 0 5 chr9 69695001 69695214 -54380958 + B4 SINE B4 2 213 -79 4 1116 246 352 0 0 chr9 69695539 69695647 -54380525 + L1M2 LINE L1 2194 2301 -4548 4 1116 404 239 67 60 chr9 69695654 69695803 -54380369 + ID_B1 SINE B4 68 220 -4 4 1116 235 105 0 34 chr9 69696000 69696059 -54380113 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 4 1116 1854 97 28 30 chr9 69696206 69696660 -54379512 - RLTR1B LTR ERV1 0 624 135 4 1116 1321 194 114 17 chr9 69696952 69697251 -54378921 + MTD LTR MaLR 4 331 -88 4 1116 298 288 198 12 chr9 69697613 69697775 -54378397 + ORR1E LTR MaLR 1 192 -167 4 1116 288 0 0 0 chr9 69697891 69697923 -54378249 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 4 1116 199 190 0 23 chr9 69698089 69698132 -54378040 + MIRc SINE MIR 112 153 -115 4 1116 365 344 88 5 chr9 69698160 69698376 -54377796 + MIR SINE MIR 4 237 -25 4 1116 279 0 0 0 chr9 69698694 69698725 -54377447 + (TAA)n Simple_repeat Simple_repeat 1 31 0 4 1116 357 260 120 76 chr9 69699407 69699565 -54376607 - RSINE1 SINE B4 0 165 1 4 1116 634 245 99 5 chr9 69699565 69699786 -54376386 - MLT2C2 LTR ERVL -219 245 9 4 1116 679 97 8 26 chr9 69701880 69701997 -54374175 + RLTR17 LTR ERVK 98 212 -480 4 1116 372 176 59 0 chr9 69701985 69702070 -54374102 - RMER19B LTR ERVK -812 90 1 4 1116 291 278 154 18 chr9 69702166 69702276 -54373896 + MTEa LTR MaLR 66 190 -189 4 1116 246 223 93 136 chr9 69702320 69702460 -54373712 - RLTR41 LTR ERV1 -62 384 251 4 1116 323 156 188 0 chr9 69702938 69703002 -54373170 + MTEa LTR MaLR 187 262 -117 4 1116 324 0 0 0 chr9 69703352 69703388 -54372784 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1116 427 288 30 0 chr9 69703636 69703768 -54372404 + MTEa LTR MaLR 234 369 -10 4 1116 3021 39 65 38 chr9 69704793 69705193 -54370979 - IAPLTR2a LTR ERVK 0 411 1 4 1116 638 277 137 10 chr9 69705929 69706133 -54370039 + B4 SINE B4 1 230 -62 4 1116 753 188 0 35 chr9 69706134 69706277 -54369895 + B1_Mur1 SINE Alu 4 141 -8 4 1116 378 0 0 0 chr9 69707108 69707150 -54369022 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1116 591 189 40 92 chr9 69707165 69707317 -54368855 - B4 SINE B4 -32 260 117 4 1116 771 92 0 0 chr9 69707325 69707434 -54368738 + (GGAA)n Simple_repeat Simple_repeat 3 111 0 4 1116 3435 43 2 2 chr9 69707444 69707844 -54368328 + MTB LTR MaLR 1 400 0 4 1116 900 178 58 48 chr9 69707844 69708139 -54368033 - RMER17C LTR ERVK -33 377 80 4 1116 473 176 49 0 chr9 69708139 69708281 -54367891 + GA-rich Low_complexity Low_complexity 3 151 0 4 1116 794 191 65 4 chr9 69708282 69708514 -54367658 - RMER17C LTR ERVK -164 246 1 4 1116 271 312 34 34 chr9 69708663 69708872 -54367300 - Arthur1B DNA Tip100 -64 1161 953 4 1116 402 235 56 77 chr9 69708893 69709036 -54367136 - B3 SINE B2 0 216 77 4 1116 309 125 0 0 chr9 69709085 69709141 -54367031 + (T)n Simple_repeat Simple_repeat 1 56 0 4 1116 1190 35 14 0 chr9 69709143 69709288 -54366884 - B1_Mm SINE Alu 0 147 1 4 1116 333 93 0 0 chr9 69709433 69709487 -54366685 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1116 290 316 48 58 chr9 69709615 69709823 -54366349 - MLT1K LTR MaLR -6 589 384 4 1116 282 341 52 22 chr9 69710507 69710642 -54365530 - LTR16A LTR ERVL -308 143 5 4 1116 1021 236 56 28 chr9 69710767 69711051 -54365121 - B4A SINE B4 0 292 1 4 1116 1003 235 10 5 chr9 69711855 69712060 -54364112 - B3 SINE B2 -10 206 1 4 1116 815 230 6 0 chr9 69712088 69712262 -54363910 + B3 SINE B2 37 211 -5 4 1116 601 258 71 10 chr9 69712733 69712929 -54363243 - MTE2a LTR MaLR 0 379 172 4 1116 288 0 0 0 chr9 69712943 69712975 -54363197 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1116 333 0 0 0 chr9 69712977 69713014 -54363158 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 4 1116 998 87 47 0 chr9 69713014 69713163 -54363009 - B2_Mm2 SINE B2 -38 157 2 4 1116 543 247 15 143 chr9 69713170 69713373 -54362799 - MTE2a LTR MaLR -202 177 1 4 1116 708 134 23 8 chr9 69713708 69713836 -54362336 + B1_Mur4 SINE Alu 1 130 -20 4 1116 645 249 163 24 chr9 69713979 69714230 -54361942 - B4 SINE B4 -4 288 3 4 1116 441 0 0 0 chr9 69715538 69715587 -54360585 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1116 240 111 0 0 chr9 69717425 69717461 -54358711 + (GGA)n Simple_repeat Simple_repeat 3 38 0 4 1116 230 0 0 32 chr9 69717865 69717896 -54358276 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1116 419 92 15 0 chr9 69718010 69718075 -54358097 + (ATTG)n Simple_repeat Simple_repeat 2 67 0 4 1116 725 246 23 51 chr9 69718075 69718289 -54357883 - B3 SINE B2 -6 210 3 4 1116 495 0 0 0 chr9 69719224 69719279 -54356893 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1116 188 268 14 0 chr9 69719788 69719859 -54356313 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1116 342 0 0 0 chr9 69719888 69719926 -54356246 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1116 733 294 34 4 chr9 69720706 69720969 -54355203 + MER46C DNA MER2_type 47 317 -21 4 1116 415 308 24 39 chr9 69721252 69721458 -54354714 - L1MB7 LINE L1 0 6184 5982 4 1116 304 266 88 9 chr9 69721765 69721879 -54354293 - MamRep434 DNA TcMar -164 262 140 4 1116 1023 237 47 15 chr9 69722593 69722867 -54353305 + B4A SINE B4 9 291 -1 4 1116 294 29 0 0 chr9 69722922 69722957 -54353215 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1116 1045 123 0 0 chr9 69723269 69723432 -54352740 - URR1A DNA MER1_type -6 220 58 4 1116 192 149 0 0 chr9 69723631 69723678 -54352494 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1116 898 300 44 38 chr9 69724282 69724649 -54351523 + MTEa LTR MaLR 6 374 -5 4 1116 1348 39 0 27 chr9 69724751 69724936 -54351236 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1116 786 127 0 0 chr9 69724939 69725065 -54351107 + (GA)n Simple_repeat Simple_repeat 2 127 0 4 1116 390 74 0 0 chr9 69725508 69725562 -54350610 + (T)n Simple_repeat Simple_repeat 1 54 0 4 1116 564 256 131 15 chr9 69725578 69725776 -54350396 - ID_B1 SINE B4 -3 221 1 4 1116 310 311 0 11 chr9 69726796 69726887 -54349285 - PB1D10 SINE Alu -7 110 21 4 1116 1695 176 54 6 chr9 69726919 69727251 -54348921 - MTD LTR MaLR -2 417 70 4 1116 973 61 13 13 chr9 69727294 69727444 -54348728 - L1_Mus3 LINE L1 -5 6633 6484 4 1116 3079 98 0 7 chr9 69727444 69727874 -54348298 + L1_Mm LINE L1 4527 4953 -930 4 1116 355 255 10 30 chr9 69727874 69727975 -54348197 - MTD LTR MaLR -320 99 1 4 1116 1294 117 27 0 chr9 69728107 69728295 -54347877 + B2_Mm2 SINE B2 1 193 -2 4 1116 567 201 16 40 chr9 69728317 69728491 -54347681 + B1F2 SINE Alu 4 144 -5 4 1116 782 148 14 0 chr9 69728539 69728681 -54347491 + CT-rich Low_complexity Low_complexity 1 144 0 4 1116 389 200 115 39 chr9 69728783 69728887 -54347285 + PB1 SINE Alu 13 124 -3 4 1116 21 0 0 0 chr9 69729036 69729057 -54347115 + AT_rich Low_complexity Low_complexity 1 21 0 4 1116 1159 189 39 8 chr9 69730012 69730268 -54345904 - RMER13B LTR ERVK 0 908 645 4 139 2464 149 120 20 chr9 69730262 69730754 -54345418 - RMER13B LTR ERVK -367 541 1 4 1117 201 216 0 0 chr9 69731066 69731103 -54345069 - MIRc SINE MIR -116 152 116 4 1117 245 200 0 0 chr9 69731267 69731312 -54344860 - RMER30 DNA MER1_type -151 51 7 4 1117 1016 268 28 115 chr9 69731395 69731787 -54344385 + MTE2a LTR MaLR 22 379 0 4 1117 1154 249 106 18 chr9 69733249 69733589 -54342583 + ORR1D2 LTR MaLR 1 370 0 4 1117 254 239 26 32 chr9 69734637 69734827 -54341345 + CT-rich Low_complexity Low_complexity 1 188 0 4 1117 1207 207 148 27 chr9 69735270 69735603 -54340569 + MTD LTR MaLR 3 385 -34 4 1117 1115 182 0 78 chr9 69735603 69735835 -54340337 - B3 SINE B2 0 216 3 4 1117 1207 207 148 27 chr9 69735835 69735873 -54340299 + MTD LTR MaLR 386 419 0 4 1117 28 29 0 0 chr9 69736513 69736548 -54339624 + GC_rich Low_complexity Low_complexity 1 35 0 4 1117 267 283 42 32 chr9 69737291 69737386 -54338786 - B4 SINE B4 -194 98 3 5 1117 366 80 0 0 chr9 69737648 69737698 -54338474 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1117 469 289 58 19 chr9 69737701 69737856 -54338316 - RSINE1 SINE B4 -3 162 2 5 1117 315 337 0 39 chr9 69737900 69738002 -54338170 + B3A SINE B2 71 168 -30 5 1117 607 271 97 26 chr9 69738358 69738470 -54337702 + Lx8 LINE L1 7221 7330 -143 5 1117 435 19 0 0 chr9 69738470 69738522 -54337650 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1117 607 271 97 26 chr9 69738522 69738636 -54337536 + Lx8 LINE L1 7331 7463 -10 5 1117 793 161 113 0 chr9 69738712 69738880 -54337292 - Lx2A1 LINE L1 -4 7004 6818 5 1117 346 264 77 21 chr9 69739562 69739705 -54336467 - Tigger6b DNA MER2_type -87 1510 1360 5 1117 624 306 10 58 chr9 69739713 69739732 -54336440 - B3A SINE B2 -3 195 179 5 1117 432 0 0 0 chr9 69739732 69739780 -54336392 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1117 624 306 10 58 chr9 69739780 69739965 -54336207 - B3A SINE B2 -20 178 1 5 1117 394 242 49 83 chr9 69739968 69740112 -54336060 - Tigger6b DNA MER2_type -222 1375 1237 5 1117 402 251 100 58 chr9 69740154 69740344 -54335828 - MER2 DNA MER2_type -64 281 84 5 1117 252 333 0 0 chr9 69740398 69740485 -54335687 - Tigger6b DNA MER2_type -372 1225 1139 5 1117 294 242 59 20 chr9 69740843 69740944 -54335228 + MLT1E2 LTR MaLR 9 113 -514 5 1117 440 266 67 47 chr9 69740948 69741098 -54335074 + B3A SINE B2 1 153 -45 5 1117 249 294 59 0 chr9 69741220 69741305 -54334867 + MLT1E2 LTR MaLR 100 189 -438 5 1117 720 253 0 0 chr9 69741654 69741804 -54334368 - B1_Mur4 SINE Alu 0 150 1 5 1117 267 114 0 0 chr9 69741819 69741863 -54334309 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1117 3422 129 63 13 chr9 69741976 69742575 -54333597 + RMER21B LTR ERV1 214 842 0 5 1117 1361 115 111 0 chr9 69742575 69742817 -54333355 - RLTR28 LTR ERVL -251 273 5 5 1117 311 195 78 11 chr9 69742846 69742949 -54333223 + B1F1 SINE Alu 14 119 -1 5 1117 1164 193 19 5 chr9 69743101 69743314 -54332858 - B3 SINE B2 0 216 1 5 1117 33 73 0 0 chr9 69743325 69743393 -54332779 + AT_rich Low_complexity Low_complexity 1 68 0 5 1117 390 74 0 0 chr9 69743466 69743520 -54332652 + (T)n Simple_repeat Simple_repeat 1 54 0 5 1117 1017 51 7 0 chr9 69743537 69743675 -54332497 - B1_Mm SINE Alu 0 147 9 5 1117 281 135 19 0 chr9 69743725 69743777 -54332395 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1117 410 295 78 16 chr9 69743801 69744059 -54332113 - B4 SINE B4 -18 274 1 5 1117 242 235 14 29 chr9 69744142 69744212 -54331960 + RLTR25A LTR ERVK 504 572 -531 5 1117 676 58 0 0 chr9 69744165 69744252 -54331920 + B1_Mus2 SINE Alu 52 138 -9 5 1117 243 0 0 0 chr9 69744263 69744290 -54331882 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1117 878 249 57 0 chr9 69745522 69745731 -54330441 + ID_B1 SINE B4 1 221 -3 5 1117 432 216 181 23 chr9 69746304 69746475 -54329697 - B3A SINE B2 0 198 1 5 1117 423 0 0 0 chr9 69747615 69747662 -54328510 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1117 495 0 0 0 chr9 69747795 69747850 -54328322 + (CTTG)n Simple_repeat Simple_repeat 1 55 0 5 1117 458 266 27 20 chr9 69747976 69748122 -54328050 + RSINE1 SINE B4 3 149 -16 5 1117 1189 69 0 0 chr9 69749198 69749343 -54326829 + B1_Mus1 SINE Alu 2 146 -2 5 1117 637 275 166 10 chr9 69750002 69750292 -54325880 + L1MB3 LINE L1 5453 5787 -384 5 1117 963 217 88 163 chr9 69750295 69750535 -54325637 + MTE2b LTR MaLR 5 201 -178 5 1117 644 271 41 0 chr9 69750535 69750705 -54325467 - B3A SINE B2 -18 180 4 5 1117 963 217 85 151 chr9 69750705 69750863 -54325309 + MTE2b LTR MaLR 202 417 -2 5 1117 572 267 7 7 chr9 69750863 69751010 -54325162 + L1MB3 LINE L1 5799 5945 -238 5 1117 279 0 0 0 chr9 69751013 69751044 -54325128 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1117 1266 167 10 0 chr9 69751049 69751253 -54324919 - B3 SINE B2 -10 206 1 5 1117 243 0 0 0 chr9 69751547 69751574 -54324598 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1117 824 240 11 0 chr9 69752405 69752584 -54323588 + B3A SINE B2 2 182 -16 5 1117 345 277 92 0 chr9 69752647 69752766 -54323406 + MLT1F2 LTR MaLR 3 132 -428 5 1117 353 334 42 86 chr9 69752787 69753124 -54323048 + MLT2C1 LTR ERVL 13 334 -63 5 1117 314 351 96 39 chr9 69753064 69753242 -54322930 + MLT1F2 LTR MaLR 353 540 -20 5 1117 249 124 391 33 chr9 69753679 69753771 -54322401 - B2_Mm2 SINE B2 -19 176 52 5 1117 1254 102 11 0 chr9 69753842 69754018 -54322154 - B2_Mm1t SINE B2 -14 179 2 5 1117 830 284 32 25 chr9 69754179 69754457 -54321715 - MTEb LTR MaLR -1 378 99 5 1117 715 234 33 62 chr9 69754696 69754906 -54321266 - B3 SINE B2 -12 204 1 5 1117 269 183 17 0 chr9 69754912 69754972 -54321200 + CT-rich Low_complexity Low_complexity 1 61 0 5 1117 603 0 0 0 chr9 69754972 69755039 -54321133 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 5 1117 363 272 0 0 chr9 69756411 69756580 -54319592 + (TG)n Simple_repeat Simple_repeat 2 170 0 5 1117 453 271 186 0 chr9 69756655 69756795 -54319377 - B4A SINE B4 -4 288 123 5 1117 427 252 29 0 chr9 69756863 69756966 -54319206 + PB1D10 SINE Alu 12 117 0 5 1117 303 338 73 29 chr9 69757062 69757199 -54318973 + ORR1E LTR MaLR 1 143 -216 5 1117 386 287 107 6 chr9 69757298 69757461 -54318711 + B4 SINE B4 83 277 -15 5 1117 180 0 0 0 chr9 69757461 69757481 -54318691 + (CATA)n Simple_repeat Simple_repeat 4 23 0 5 1117 286 324 190 17 chr9 69757481 69757496 -54318676 + B4A SINE B4 278 292 0 5 1117 1032 293 177 60 chr9 69757592 69758009 -54318163 - L1M7 LINE L1 -4863 1355 869 5 1117 1200 65 124 6 chr9 69758009 69758178 -54317994 - B2_Mm2 SINE B2 -6 189 1 5 1117 1032 293 177 60 chr9 69758178 69758240 -54317932 - L1M7 LINE L1 -5350 868 831 5 1117 865 166 0 14 chr9 69758240 69758387 -54317785 - B1_Mur1 SINE Alu 0 149 5 5 1117 1032 293 177 60 chr9 69758387 69759112 -54317060 - L1M7 LINE L1 -5388 830 9 5 1117 292 259 8 74 chr9 69759278 69759399 -54316773 + YREP_Mm Unknown Unknown 184 296 -1516 5 1117 683 192 0 0 chr9 69759295 69759420 -54316752 - ID_B1 SINE B4 -19 205 81 5 1117 334 173 660 8 chr9 69759708 69759836 -54316336 - B3 SINE B2 -3 213 2 5 1117 213 336 93 27 chr9 69759851 69760001 -54316171 - MIRb SINE MIR -39 229 70 5 1117 910 233 16 0 chr9 69760161 69760354 -54315818 - B3 SINE B2 -20 196 1 5 1117 291 114 0 0 chr9 69760577 69760621 -54315551 + (CGTG)n Simple_repeat Simple_repeat 1 44 0 5 1117 1062 247 36 18 chr9 69760703 69760983 -54315189 - B4 SINE B4 -7 285 1 5 1117 467 243 178 14 chr9 69761503 69761649 -54314523 - B3 SINE B2 -2 214 45 5 1117 327 150 0 0 chr9 69761909 69761969 -54314203 + (CATA)n Simple_repeat Simple_repeat 3 62 0 5 1117 223 207 0 33 chr9 69762391 69762451 -54313721 + CT-rich Low_complexity Low_complexity 4 61 0 5 1117 480 48 0 0 chr9 69762452 69762515 -54313657 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1117 250 211 112 50 chr9 69762808 69762888 -54313284 - Lx8 LINE L1 -1579 5894 5810 5 1117 574 347 62 4 chr9 69763117 69763389 -54312783 + B4A SINE B4 1 288 -4 5 1117 1690 120 141 13 chr9 69763435 69763739 -54312433 + ORR1B2 LTR MaLR 1 343 -24 5 1117 294 95 0 0 chr9 69763750 69763792 -54312380 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 5 1117 226 312 121 5 chr9 69764005 69764211 -54311961 - L1M1 LINE L1 -681 5619 5390 5 1117 920 233 39 0 chr9 69764260 69764466 -54311706 + B3 SINE B2 3 216 0 5 1117 1191 273 36 11 chr9 69764761 69765120 -54311052 - MTEa LTR MaLR -11 368 1 5 1117 626 172 8 0 chr9 69765967 69766095 -54310077 + CT-rich Low_complexity Low_complexity 2 130 0 5 1117 476 141 0 21 chr9 69766190 69766216 -54309956 + polypyrimidine Low_complexity Low_complexity 68 92 0 5 1117 4462 12 4 0 chr9 69766216 69766707 -54309465 - MT2_Mm LTR ERVL 0 493 1 5 1117 476 141 0 21 chr9 69766707 69766774 -54309398 + polypyrimidine Low_complexity Low_complexity 1 67 0 5 1117 255 317 30 0 chr9 69766778 69766879 -54309293 + CT-rich Low_complexity Low_complexity 2 105 0 5 1117 23 33 0 0 chr9 69767114 69767144 -54309028 + AT_rich Low_complexity Low_complexity 1 30 0 5 1117 703 241 62 0 chr9 69767393 69767538 -54308634 + B3A SINE B2 1 154 -44 5 1117 312 27 0 0 chr9 69767543 69767580 -54308592 + (CATA)n Simple_repeat Simple_repeat 2 38 0 5 1117 366 42 0 0 chr9 69768634 69768682 -54307490 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1117 823 320 42 47 chr9 69768843 69769250 -54306922 + MTD LTR MaLR 1 405 -14 5 1117 1671 140 0 0 chr9 69769662 69769927 -54306245 - ORR1A4 LTR MaLR -1 328 64 5 1117 2386 106 48 0 chr9 69770004 69770164 -54306008 + ORR1B1 LTR MaLR 1 161 -233 5 1117 6787 61 2 6 chr9 69770164 69771023 -54305149 - L1_Mus4 LINE L1 0 6636 5781 5 1117 2386 106 48 0 chr9 69771023 69771238 -54304934 + ORR1B1 LTR MaLR 162 393 -1 5 1117 636 196 55 14 chr9 69771252 69771397 -54304775 + B3A SINE B2 1 151 -47 5 1117 465 19 0 0 chr9 69771401 69771455 -54304717 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1117 296 183 59 35 chr9 69771705 69771790 -54304382 - MIRc SINE MIR -98 170 84 5 1117 247 318 0 12 chr9 69772583 69772669 -54303503 + G-rich Low_complexity Low_complexity 2 86 0 5 1117 450 263 0 11 chr9 69773330 69773436 -54302736 + B1F SINE Alu 6 110 -10 5 1117 820 292 15 0 chr9 69773460 69773662 -54302510 + B3 SINE B2 6 210 -6 5 1117 291 28 0 0 chr9 69773882 69773918 -54302254 + (CTTG)n Simple_repeat Simple_repeat 2 37 0 5 1117 221 323 15 15 chr9 69773974 69774040 -54302132 + RSINE1 SINE B4 18 83 -82 5 1117 540 0 0 0 chr9 69774077 69774137 -54302035 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1117 477 0 0 0 chr9 69774137 69774189 -54301983 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1117 343 264 9 52 chr9 69775146 69775262 -54300910 + LTR37A LTR ERV1 301 411 -15 5 1117 269 259 35 0 chr9 69775236 69775321 -54300851 - B2_Mm2 SINE B2 -107 88 1 5 1117 866 212 48 0 chr9 69776007 69776196 -54299976 + B3A SINE B2 1 198 0 6 1117 243 278 27 14 chr9 69777245 69777318 -54298854 - MER5A1 DNA MER1_type -85 81 8 6 1117 212 254 42 69 chr9 69777537 69777609 -54298563 + ID2 SINE ID 3 72 -11 6 1117 330 326 23 15 chr9 69778119 69778250 -54297922 - MIRb SINE MIR -135 133 2 6 1117 187 349 24 0 chr9 69778327 69778410 -54297762 - MIRc SINE MIR -161 107 23 6 1117 1862 145 0 25 chr9 69778585 69778911 -54297261 + ORR1A3 LTR MaLR 1 318 -8 6 1117 705 262 36 10 chr9 69779460 69779653 -54296519 - B3 SINE B2 -6 210 13 6 1117 228 262 34 40 chr9 69779811 69779931 -54296241 + L2b LINE L2 3002 3126 -261 6 1117 699 311 20 46 chr9 69780494 69780797 -54295375 + RMER15 LTR ERVL 267 561 -14 6 1117 396 0 0 0 chr9 69781507 69781551 -54294621 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 6 1117 666 259 49 15 chr9 69781815 69782019 -54294153 - B3 SINE B2 -1 215 5 6 1117 1244 267 97 12 chr9 69782230 69782465 -54293707 + RCHARR1 DNA MER1_type 64 334 -640 6 1117 216 0 0 0 chr9 69782465 69782489 -54293683 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1117 1244 267 97 12 chr9 69782489 69782655 -54293517 + RCHARR1 DNA MER1_type 335 499 -475 6 1117 418 262 32 16 chr9 69782652 69782776 -54293396 + RSINE1 SINE B4 21 146 -19 6 1117 693 0 0 0 chr9 69782906 69782983 -54293189 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 6 1117 1291 214 62 52 chr9 69783033 69783342 -54292830 + RCHARR1 DNA MER1_type 523 852 -122 6 1117 796 196 44 69 chr9 69783342 69783545 -54292627 + B3A SINE B2 1 198 0 6 1117 1291 214 62 52 chr9 69783545 69783619 -54292553 + RCHARR1 DNA MER1_type 853 910 -64 6 1117 210 37 0 0 chr9 69784202 69784229 -54291943 + (G)n Simple_repeat Simple_repeat 1 27 0 6 1117 235 291 141 8 chr9 69784651 69784779 -54291393 - L2 LINE L2 -946 2473 2329 6 1117 617 234 123 0 chr9 69785183 69785337 -54290835 + Lx8 LINE L1 6961 7133 -340 6 1117 1163 84 6 0 chr9 69786794 69786972 -54289200 + (GTTTG)n Simple_repeat Simple_repeat 1 179 0 6 1117 1127 80 5 0 chr9 69786991 69787219 -54288953 + (GTTTG)n Simple_repeat Simple_repeat 1 229 0 6 1117 519 202 114 60 chr9 69787249 69787433 -54288739 - MTE2a LTR MaLR -3 376 183 6 1117 493 277 69 0 chr9 69787443 69787602 -54288570 - B3A SINE B2 -22 176 7 6 1117 732 325 46 36 chr9 69787754 69788035 -54288137 + B4 SINE B4 2 285 -7 6 1117 242 373 29 17 chr9 69788774 69788946 -54287226 - LTR16E2 LTR ERVL -394 174 1 6 1117 510 308 40 27 chr9 69790227 69790377 -54285795 - RSINE1 SINE B4 -10 155 4 6 1117 1338 80 17 0 chr9 69790504 69790679 -54285493 + B2_Mm2 SINE B2 2 179 -16 6 1117 324 301 113 17 chr9 69790687 69790802 -54285370 - MER20 DNA MER1_type -87 132 7 6 1117 1431 202 136 3 chr9 69791257 69791580 -54284592 - ORR1D2 LTR MaLR 0 370 5 6 1117 327 350 10 15 chr9 69791862 69792059 -54284113 + L1MA6 LINE L1 5661 5856 -441 6 1117 297 301 0 0 chr9 69792061 69792144 -54284028 + BC1_Mm scRNA scRNA 7 89 -63 6 1117 28 0 0 0 chr9 69792144 69792172 -54284000 + AT_rich Low_complexity Low_complexity 1 28 0 6 1117 743 242 202 29 chr9 69792178 69792519 -54283653 + L1MA6 LINE L1 5876 6275 -25 6 1117 1015 232 0 0 chr9 69792602 69792792 -54283380 + B3 SINE B2 20 209 -7 6 1117 261 0 0 0 chr9 69792867 69792896 -54283276 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1117 401 258 38 31 chr9 69793102 69793262 -54282910 + RSINE1 SINE B4 5 165 0 6 1117 183 80 0 0 chr9 69793306 69793331 -54282841 + (CAT)n Simple_repeat Simple_repeat 1 25 0 6 1117 813 21 0 0 chr9 69793431 69793526 -54282646 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 6 1117 738 256 53 5 chr9 69793563 69793771 -54282401 - ID_B1 SINE B4 0 224 7 6 1117 189 351 90 0 chr9 69794180 69794291 -54281881 + MIR SINE MIR 15 135 -127 6 1117 718 133 31 6 chr9 69794345 69794504 -54281668 + (TAGA)n Simple_repeat Simple_repeat 2 164 0 6 1117 369 195 79 0 chr9 69794626 69794790 -54281382 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 6 1117 255 103 0 0 chr9 69794811 69794850 -54281322 + (CATA)n Simple_repeat Simple_repeat 4 42 0 6 1117 576 0 0 0 chr9 69795223 69795287 -54280885 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 6 1117 2261 188 34 53 chr9 69795289 69795828 -54280344 + Lx9 LINE L1 6805 7467 -177 6 1117 330 26 0 0 chr9 69795828 69795867 -54280305 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1117 730 331 50 75 chr9 69795867 69795995 -54280177 + Lx9 LINE L1 7329 7452 -21 6 1117 982 178 91 5 chr9 69796440 69796638 -54279534 + B3 SINE B2 1 215 -1 6 1117 459 0 0 0 chr9 69796715 69796766 -54279406 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 1117 542 298 111 33 chr9 69796767 69796816 -54279356 + B4 SINE B4 31 77 -215 6 1117 189 74 0 0 chr9 69796816 69796843 -54279329 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 6 1117 542 298 111 33 chr9 69796843 69797036 -54279136 + B4 SINE B4 78 292 0 6 1117 1528 174 3 20 chr9 69797340 69797640 -54278532 + RLTR11A LTR ERVK 7 301 -227 6 1117 1722 114 11 0 chr9 69797634 69797905 -54278267 + RLTR11A LTR ERVK 255 528 0 6 1117 399 106 0 0 chr9 69798051 69798117 -54278055 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 6 1117 713 142 14 63 chr9 69798121 69798264 -54277908 + B1_Mus2 SINE Alu 11 146 -1 6 1117 230 362 0 0 chr9 69798319 69798388 -54277784 - B3A SINE B2 -16 182 114 6 1117 270 308 0 0 chr9 69798344 69798409 -54277763 - B4A SINE B4 -7 285 221 6 1117 32 57 0 0 chr9 69798409 69798462 -54277710 + AT_rich Low_complexity Low_complexity 1 53 0 6 1117 278 280 21 21 chr9 69798464 69798559 -54277613 - B4A SINE B4 -75 217 123 6 1117 243 0 0 0 chr9 69799906 69799933 -54276239 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1117 626 242 67 58 chr9 69799969 69800193 -54275979 - B4 SINE B4 0 292 67 6 1117 191 91 53 35 chr9 69800556 69800613 -54275559 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 6 1117 263 0 81 0 chr9 69800613 69800650 -54275522 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 6 1117 448 208 101 20 chr9 69800650 69800854 -54275318 - Lx9 LINE L1 -13 7631 7384 6 1117 803 197 30 50 chr9 69800880 69801078 -54275094 - B3A SINE B2 -4 194 1 6 1117 333 279 16 0 chr9 69802243 69802340 -54273832 + PB1D10 SINE Alu 14 115 -34 6 1117 522 303 20 7 chr9 69802775 69802928 -54273244 + RSINE1 SINE B4 3 157 -8 6 1117 351 0 0 0 chr9 69802931 69802970 -54273202 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1117 1019 270 269 21 chr9 69803005 69803411 -54272761 + Lx8 LINE L1 6827 7345 -128 6 1117 603 0 0 0 chr9 69803411 69803478 -54272694 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 6 1117 1019 270 269 21 chr9 69803478 69803585 -54272587 + Lx8 LINE L1 7346 7467 -6 6 1117 778 213 126 0 chr9 69803722 69803896 -54272276 + B3 SINE B2 10 205 -11 6 1117 1233 88 14 24 chr9 69804271 69804480 -54271692 + RLTR15 LTR ERVK 147 353 -6 6 1117 325 187 0 74 chr9 69804483 69804564 -54271608 + ID_B1 SINE B4 134 208 -16 6 1117 459 0 0 0 chr9 69804565 69804616 -54271556 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1117 347 176 152 29 chr9 69804616 69804721 -54271451 - MIR SINE MIR -43 219 102 6 1117 667 261 7 7 chr9 69805314 69805468 -54270704 + RSINE1 SINE B4 2 155 -10 6 1117 1498 203 89 19 chr9 69805802 69806174 -54269998 - MTD LTR MaLR -21 398 1 6 1117 275 273 3 21 chr9 69806272 69806383 -54269789 + B3 SINE B2 1 106 -92 6 1117 1240 152 36 18 chr9 69806881 69807102 -54269070 + URR1B DNA MER1_type 1 225 0 6 1117 459 0 0 0 chr9 69807129 69807180 -54268992 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1117 587 242 0 30 chr9 69807182 69807208 -54268964 - B3A SINE B2 -44 154 131 6 1117 1947 111 89 16 chr9 69807208 69807511 -54268661 + ORR1A2 LTR MaLR 1 325 -2 6 1117 587 242 0 30 chr9 69807511 69807616 -54268556 - B3A SINE B2 -68 130 27 6 1117 1168 80 0 6 chr9 69807616 69807780 -54268392 + B2_Mm2 SINE B2 2 164 -31 6 1117 413 217 0 0 chr9 69807810 69807893 -54268279 + B3A SINE B2 116 198 0 6 1117 228 250 0 0 chr9 69807917 69807965 -54268207 - MLT1A0 LTR MaLR -68 297 250 6 1117 630 215 0 0 chr9 69808236 69808357 -54267815 + RSINE1 SINE B4 5 125 -40 6 1117 261 0 0 0 chr9 69808361 69808390 -54267782 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1117 459 0 0 0 chr9 69808390 69808440 -54267732 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1117 628 302 33 85 chr9 69809506 69809959 -54266213 + MTD LTR MaLR 1 406 -15 6 1117 486 286 2 8 chr9 69810606 69810751 -54265421 + B1F SINE Alu 5 150 0 6 1117 630 250 27 7 chr9 69810755 69810904 -54265268 + B3A SINE B2 1 152 -46 6 1117 409 17 0 33 chr9 69810905 69810965 -54265207 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1117 660 255 7 0 chr9 69811096 69811237 -54264935 + B1F2 SINE Alu 1 142 -7 6 1117 605 108 41 8 chr9 69811581 69811702 -54264470 + CT-rich Low_complexity Low_complexity 3 127 0 6 1117 641 215 150 6 chr9 69811891 69812064 -54264108 + B4 SINE B4 89 286 -6 6 1117 637 252 0 7 chr9 69812512 69812649 -54263523 - ID_B1 SINE B4 0 224 89 6 1117 1433 167 72 49 chr9 69812649 69812842 -54263330 - RMER17C LTR ERVK -2 408 208 6 1117 594 41 0 0 chr9 69812842 69812915 -54263257 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1117 1433 167 72 49 chr9 69812915 69813068 -54263104 - RMER17C LTR ERVK -203 207 54 6 1117 886 216 119 0 chr9 69813699 69813893 -54262279 - ID_B1 SINE B4 -7 217 1 6 1117 627 265 0 19 chr9 69814791 69814945 -54261227 + RSINE1 SINE B4 2 152 -13 6 1117 995 234 32 90 chr9 69815011 69815225 -54260947 + B4A SINE B4 1 217 -75 6 1117 1098 88 0 0 chr9 69815225 69815372 -54260800 + B1_Mm SINE Alu 1 147 0 6 1117 995 234 32 90 chr9 69815372 69815467 -54260705 + B4A SINE B4 218 292 0 6 1117 536 257 27 58 chr9 69815671 69815894 -54260278 + B3 SINE B2 1 216 0 6 1117 229 237 47 106 chr9 69816419 69816504 -54259668 + B3A SINE B2 5 84 -114 6 1117 791 230 29 24 chr9 69816428 69816637 -54259535 + B4 SINE B4 10 219 -73 6 1117 188 302 70 40 chr9 69816901 69817001 -54259171 - MER5A DNA MER1_type -70 119 17 6 1117 679 271 28 6 chr9 69817314 69817492 -54258680 - B3A SINE B2 -16 182 1 7 1117 509 168 127 42 chr9 69817521 69817639 -54258533 + B3A SINE B2 1 128 -70 7 1117 615 272 83 73 chr9 69817871 69818133 -54258039 + B4A SINE B4 29 289 -3 7 1117 233 276 0 0 chr9 69818424 69818482 -54257690 - B1_Mur1 SINE Alu -37 112 55 7 1117 616 280 48 0 chr9 69818983 69819172 -54257000 + Lx7 LINE L1 7128 7325 -371 7 1117 227 93 0 23 chr9 69819201 69819245 -54256927 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1117 474 310 47 47 chr9 69820648 69820922 -54255250 + B4A SINE B4 1 274 -18 7 1117 807 192 141 16 chr9 69821000 69821185 -54254987 - B3 SINE B2 -8 208 1 7 1117 1047 58 0 0 chr9 69822490 69822629 -54253543 + B1_Mus1 SINE Alu 10 148 0 7 1117 2806 53 0 3 chr9 69822934 69823274 -54252898 + Lx3_Mus LINE L1 6389 6727 -282 7 1117 1022 38 0 0 chr9 69823274 69823406 -54252766 - RLTRETN_Mm LTR ERVK -190 132 1 7 1117 1967 72 10 48 chr9 69823407 69823698 -54252474 + Lx3_Mus LINE L1 6730 7009 0 7 1117 843 131 56 6 chr9 69823729 69823890 -54252282 + URR1A DNA MER1_type 57 225 -1 7 1117 2350 112 176 0 chr9 69823990 69824365 -54251807 - BGLII_B LTR ERVK 0 441 1 7 1117 589 221 0 58 chr9 69824768 69824907 -54251265 - ID_B1 SINE B4 -7 217 87 7 1117 25 51 0 0 chr9 69827185 69827224 -54248948 + AT_rich Low_complexity Low_complexity 1 39 0 7 1117 2143 160 2 53 chr9 69827713 69828108 -54248064 - Lx4A LINE L1 0 7058 6684 7 1117 231 292 15 0 chr9 69829126 69829191 -54246981 + B4 SINE B4 225 290 -2 7 1117 478 175 178 23 chr9 69829244 69829373 -54246799 - B1F SINE Alu 0 149 1 7 1117 915 244 153 12 chr9 69829434 69829754 -54246418 + ORR1D2 LTR MaLR 4 368 -2 7 1117 796 188 0 7 chr9 69830494 69830639 -54245533 - B1_Mur3 SINE Alu 0 149 6 7 1117 463 268 0 73 chr9 69830495 69830660 -54245512 - ID_B1 SINE B4 0 224 72 7 1117 369 0 0 0 chr9 69830696 69830737 -54245435 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1117 820 252 79 15 chr9 69830773 69831039 -54245133 - B4A SINE B4 -9 283 1 7 1117 220 205 0 0 chr9 69831589 69831628 -54244544 + (TATG)n Simple_repeat Simple_repeat 2 40 0 7 1117 1246 34 0 0 chr9 69831693 69831839 -54244333 - B1_Mus2 SINE Alu 0 147 2 7 1117 803 107 8 0 chr9 69831839 69831960 -54244212 - B2_Mm1t SINE B2 -69 124 3 7 1117 1194 68 0 0 chr9 69831974 69832121 -54244051 - B1_Mm SINE Alu 0 147 1 7 1117 416 86 16 5 chr9 69832126 69832222 -54243950 - B2_Mm1t SINE B2 -19 174 2 7 1117 1241 27 0 13 chr9 69832591 69832741 -54243431 + B1_Mus1 SINE Alu 1 148 0 7 1117 207 0 0 0 chr9 69832746 69832769 -54243403 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7 1117 709 264 46 109 chr9 69832911 69833134 -54243038 + B4 SINE B4 10 209 -83 7 1117 661 251 120 0 chr9 69833134 69833317 -54242855 + B3 SINE B2 1 205 -11 7 1117 709 264 46 109 chr9 69833317 69833395 -54242777 + B4 SINE B4 210 292 0 7 1117 269 236 0 8 chr9 69833403 69833531 -54242641 + (CA)n Simple_repeat Simple_repeat 1 127 0 7 1117 413 213 184 58 chr9 69834154 69834328 -54241844 - B3A SINE B2 -1 197 2 7 1117 961 211 15 5 chr9 69834562 69834767 -54241405 + B3 SINE B2 3 209 -7 7 1117 446 283 9 0 chr9 69835057 69835163 -54241009 + ID_B1 SINE B4 105 211 -13 7 1117 21 71 0 0 chr9 69835290 69835332 -54240840 + AT_rich Low_complexity Low_complexity 1 42 0 7 1117 220 264 0 0 chr9 69835847 69835900 -54240272 - MIR SINE MIR -82 180 128 7 1117 536 78 56 0 chr9 69836209 69836299 -54239873 - Lx2 LINE L1 0 6997 6903 7 1117 751 171 19 0 chr9 69836452 69836610 -54239562 - URR1B DNA MER1_type 0 225 65 7 1117 334 23 0 0 chr9 69836604 69836647 -54239525 + B2_Mm1t SINE B2 44 86 -107 7 1117 398 303 75 64 chr9 69836655 69836842 -54239330 + ID_B1 SINE B4 15 203 -21 7 1117 461 201 242 19 chr9 69838308 69838465 -54237707 - B3A SINE B2 -4 194 3 7 1117 2495 46 71 9 chr9 69838864 69839190 -54236982 - ORR1A1 LTR MaLR 0 346 1 7 1117 198 0 0 0 chr9 69839402 69839424 -54236748 + (CAAG)n Simple_repeat Simple_repeat 2 23 0 7 1117 458 321 78 43 chr9 69839707 69839964 -54236208 + B4 SINE B4 8 273 -19 7 1117 329 230 111 74 chr9 69841116 69841224 -54234948 - PB1D7 SINE Alu 0 120 9 7 1117 283 340 28 0 chr9 69842146 69842252 -54233920 + PB1D7 SINE Alu 1 109 -11 7 1117 311 239 197 34 chr9 69842407 69842524 -54233648 - B3 SINE B2 0 216 81 7 1117 690 275 69 0 chr9 69843611 69843800 -54232372 + B4 SINE B4 87 288 -4 7 1117 285 29 0 0 chr9 69844028 69844062 -54232110 + (TA)n Simple_repeat Simple_repeat 1 34 0 7 1117 333 0 0 0 chr9 69844062 69844098 -54232074 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1117 1097 208 19 0 chr9 69844497 69844709 -54231463 + B3 SINE B2 1 216 0 7 1117 651 204 35 14 chr9 69845485 69845629 -54230543 + B1_Mur2 SINE Alu 1 147 -2 7 1117 309 238 50 0 chr9 69846689 69846769 -54229403 + PB1 SINE Alu 11 94 -33 7 1117 1176 173 4 49 chr9 69847221 69847446 -54228726 - B3 SINE B2 0 216 2 7 1117 640 243 14 0 chr9 69847504 69847652 -54228520 + B3 SINE B2 1 150 -66 7 1117 803 135 23 0 chr9 69848777 69848910 -54227262 - B1_Mur4 SINE Alu -9 141 6 7 1117 336 280 14 57 chr9 69849011 69849151 -54227021 + ID_B1 SINE B4 88 221 -3 7 1117 219 220 0 0 chr9 69849198 69849248 -54226924 + (TATG)n Simple_repeat Simple_repeat 2 51 0 7 1117 435 254 35 9 chr9 69850363 69850478 -54225694 - B4 SINE B4 -167 125 8 7 1117 474 203 40 3 chr9 69853311 69853424 -54222748 + B1_Mur2 SINE Alu 3 116 -34 7 1117 268 346 0 29 chr9 69856517 69856528 -54219644 + ID_B1 SINE B4 73 173 -51 7 1117 426 280 0 0 chr9 69856528 69856621 -54219551 + B1_Mur2 SINE Alu 3 95 -54 7 1117 468 271 62 18 chr9 69856910 69857092 -54219080 + B3A SINE B2 6 207 -9 7 1117 354 257 88 10 chr9 69857126 69857228 -54218944 + PB1D10 SINE Alu 1 110 -7 7 1117 222 245 0 39 chr9 69858217 69858268 -54217904 + B1_Mur4 SINE Alu 2 50 -100 7 1117 505 207 41 41 chr9 69858715 69858836 -54217336 + B1F SINE Alu 10 130 -19 7 1117 360 118 0 0 chr9 69859573 69859641 -54216531 + (T)n Simple_repeat Simple_repeat 1 68 0 7 1117 1134 61 0 33 chr9 69859641 69859793 -54216379 - B1_Mus2 SINE Alu 0 147 1 7 1117 25 65 0 0 chr9 69860471 69860517 -54215655 + GC_rich Low_complexity Low_complexity 1 46 0 7 1117 324 309 167 23 chr9 69860928 69861233 -54214939 - L2a LINE L2 -39 3387 3039 7 1118 260 257 14 0 chr9 69861470 69861544 -54214628 - L2a LINE L2 -746 2673 2599 7 1118 216 271 47 47 chr9 69861642 69861770 -54214402 - L2a LINE L2 -1012 2407 2280 7 1118 1009 133 200 0 chr9 69862045 69862225 -54213947 - B3 SINE B2 0 216 1 7 1118 21 0 0 0 chr9 69863266 69863287 -54212885 + AT_rich Low_complexity Low_complexity 1 21 0 7 1118 909 135 55 6 chr9 69863620 69863784 -54212388 + B2_Mm2 SINE B2 2 173 -22 7 1118 1148 65 0 0 chr9 69863810 69863949 -54212223 - B1_Mus1 SINE Alu -9 139 1 7 1118 236 259 0 0 chr9 69863968 69864022 -54212150 + GA-rich Low_complexity Low_complexity 1 54 0 7 1118 300 225 56 0 chr9 69864027 69864098 -54212074 - ID_B1 SINE B4 -66 158 84 7 1118 808 203 13 13 chr9 69864193 69864343 -54211829 + B1_Mur4 SINE Alu 1 150 0 7 1118 194 322 0 48 chr9 69865450 69865512 -54210660 - L2c LINE L2 -24 3363 3305 7 1118 464 234 22 88 chr9 69865627 69865763 -54210409 + B1_Mur3 SINE Alu 1 127 -22 7 1118 21 0 0 0 chr9 69865765 69865786 -54210386 + GC_rich Low_complexity Low_complexity 1 21 0 7 1118 603 200 83 8 chr9 69866118 69866239 -54209933 + B1_Mur2 SINE Alu 14 143 -6 7 1118 1208 21 28 0 chr9 69866242 69866385 -54209787 + B1_Mus1 SINE Alu 2 148 0 7 1118 195 146 0 0 chr9 69866386 69866427 -54209745 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1118 699 272 9 15 chr9 69866438 69866649 -54209523 + B3A SINE B2 2 205 -11 7 1118 29 0 0 0 chr9 69866671 69866700 -54209472 + AT_rich Low_complexity Low_complexity 1 29 0 7 1118 441 264 174 0 chr9 69866712 69866833 -54209339 + B1_Mur1 SINE Alu 2 143 -6 7 1118 849 155 42 0 chr9 69868123 69868265 -54207907 - B1_Mus1 SINE Alu 0 148 1 7 1118 880 153 0 7 chr9 69868536 69868681 -54207491 - B1_Mus2 SINE Alu 0 147 4 7 1118 323 321 52 30 chr9 69869069 69869204 -54206968 + B1F1 SINE Alu 5 142 -7 7 1118 214 294 88 0 chr9 69869213 69869281 -54206891 + ID4_ SINE ID 2 75 -8 7 1118 540 262 64 55 chr9 69869305 69869507 -54206665 + MER3 DNA MER1_type 1 204 -5 7 1118 943 173 67 0 chr9 69870963 69871142 -54205030 + B3 SINE B2 1 191 -25 7 1118 1350 65 38 0 chr9 69871682 69871867 -54204305 - B2_Mm1a SINE B2 0 193 2 7 1118 369 276 141 8 chr9 69872057 69872185 -54203987 - RSINE1 SINE B4 -19 146 2 7 1118 1662 140 123 0 chr9 69872275 69872568 -54203604 - ORR1A4 LTR MaLR 0 329 1 7 1118 894 231 100 19 chr9 69872695 69872964 -54203208 + B4A SINE B4 2 292 0 7 1118 569 301 31 92 chr9 69873198 69873425 -54202747 - B4A SINE B4 -79 213 1 7 1118 1317 67 44 6 chr9 69873756 69873936 -54202236 + B2_Mm2 SINE B2 1 187 -8 7 1118 545 242 40 0 chr9 69874048 69874172 -54202000 - RSINE1 SINE B4 -36 129 1 8 1118 346 186 0 0 chr9 69874467 69874526 -54201646 - ORR1D1 LTR MaLR -3 381 323 8 1118 822 116 0 28 chr9 69874518 69874660 -54201512 - ORR1D1 LTR MaLR -236 138 1 8 1118 296 161 0 16 chr9 69874959 69875022 -54201150 + CT-rich Low_complexity Low_complexity 4 65 0 8 1118 597 239 0 50 chr9 69875026 69875167 -54201005 - B1F2 SINE Alu -9 140 7 8 1118 22 56 0 0 chr9 69875440 69875476 -54200696 + AT_rich Low_complexity Low_complexity 1 36 0 8 1118 288 77 0 0 chr9 69875914 69875953 -54200219 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1118 1328 58 70 0 chr9 69876034 69876206 -54199966 + B2_Mm2 SINE B2 3 186 -9 8 1118 342 243 14 0 chr9 69876237 69876307 -54199865 - ID_B1 SINE B4 -117 107 37 8 1118 467 237 141 30 chr9 69876811 69876946 -54199226 + B3A SINE B2 2 151 -47 8 1118 314 272 0 58 chr9 69876950 69877050 -54199122 + L1M3 LINE L1 5480 5574 -600 8 1118 484 235 55 61 chr9 69877026 69877189 -54198983 + L1ME3A LINE L1 5993 6154 -19 8 1118 978 238 41 30 chr9 69877207 69877476 -54198696 + B4A SINE B4 7 278 -14 8 1118 340 322 137 29 chr9 69877530 69877939 -54198233 + L2a LINE L2 1552 2004 -1415 8 1118 438 285 88 17 chr9 69877979 69878196 -54197976 - MTE2b LTR MaLR 0 379 179 8 1118 207 0 0 0 chr9 69878215 69878238 -54197934 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 8 1118 369 165 23 23 chr9 69878249 69878336 -54197836 - B1_Mur3 SINE Alu -21 128 42 8 1118 258 318 0 0 chr9 69878336 69878402 -54197770 + (TCTCTG)n Simple_repeat Simple_repeat 3 68 0 8 1118 236 250 92 53 chr9 69878442 69878518 -54197654 - MTE2b LTR MaLR -231 148 70 8 1118 531 278 45 37 chr9 69878707 69878976 -54197196 + L2a LINE L2 2971 3241 -185 8 1118 310 285 78 35 chr9 69879063 69879205 -54196967 + RSINE1 SINE B4 2 149 -16 8 1118 198 0 0 0 chr9 69880254 69880276 -54195896 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1118 711 156 40 47 chr9 69880307 69880455 -54195717 + B1_Mur2 SINE Alu 3 149 0 8 1118 920 162 7 0 chr9 69883690 69883832 -54192340 + B1_Mus2 SINE Alu 1 143 -4 8 1118 288 0 0 0 chr9 69883842 69883874 -54192298 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 8 1118 183 42 0 0 chr9 69884271 69884295 -54191877 + (CCA)n Simple_repeat Simple_repeat 1 24 0 8 1118 360 0 0 0 chr9 69885018 69885058 -54191114 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1118 303 282 63 13 chr9 69885093 69885251 -54190921 + L1M2 LINE L1 4144 4309 -1834 8 1118 864 138 13 27 chr9 69885378 69885527 -54190645 + B1_Mur2 SINE Alu 2 148 -1 8 1118 626 240 127 27 chr9 69886134 69886472 -54189700 + L1M2 LINE L1 4463 4834 -1309 8 1118 579 152 142 16 chr9 69886482 69886609 -54189563 + B1_Mur2 SINE Alu 7 149 0 8 1118 351 262 181 31 chr9 69886642 69886835 -54189337 + L1M2 LINE L1 4851 5072 -1071 8 1118 710 179 69 94 chr9 69886881 69887084 -54189088 + B3A SINE B2 1 198 0 8 1118 1234 271 89 22 chr9 69887089 69887550 -54188622 + L1M2 LINE L1 5281 5772 -528 8 1118 221 250 0 0 chr9 69888121 69888161 -54188011 + ID SINE ID 39 78 -146 8 1118 380 297 93 62 chr9 69888190 69888416 -54187756 - LTR50 LTR ERVL -144 651 419 8 1118 330 267 121 0 chr9 69888536 69888652 -54187520 - LTR50 LTR ERVL -615 180 51 8 1118 557 133 11 0 chr9 69889045 69889135 -54187037 - BC1_Mm scRNA scRNA -46 106 16 8 1118 350 235 167 56 chr9 69889330 69889510 -54186662 - CYRA11_Mm Unknown Y-chromosome -246 371 172 8 1118 844 136 149 0 chr9 69889357 69889511 -54186661 + URR1A DNA MER1_type 50 226 0 8 1118 1063 195 9 14 chr9 69890473 69890686 -54185486 + B3 SINE B2 1 212 -4 8 1118 810 102 0 0 chr9 69890694 69890812 -54185360 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 8 1118 462 167 0 0 chr9 69891284 69891368 -54184804 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1118 365 213 52 61 chr9 69891426 69891541 -54184631 - PB1D7 SINE Alu -6 114 1 8 1118 677 247 51 25 chr9 69891905 69892063 -54184109 + RSINE1 SINE B4 1 162 -3 8 1118 280 269 0 15 chr9 69892119 69892187 -54183985 + MLT1J LTR MaLR 370 436 -76 8 1118 546 16 0 0 chr9 69892387 69892450 -54183722 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 1118 241 308 5 0 chr9 69892881 69892951 -54183221 + BC1_Mm scRNA scRNA 2 72 -11 8 1118 228 35 0 0 chr9 69892951 69892980 -54183192 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1118 23 0 0 0 chr9 69893074 69893097 -54183075 + AT_rich Low_complexity Low_complexity 1 23 0 8 1118 661 335 48 15 chr9 69893102 69893375 -54182797 + B4A SINE B4 5 286 -6 8 1118 1452 231 77 17 chr9 69893711 69894064 -54182108 - MTEa LTR MaLR -3 376 3 8 1118 282 250 16 0 chr9 69894383 69894447 -54181725 - ORR1E LTR MaLR -56 323 259 8 1118 315 348 7 34 chr9 69894559 69894705 -54181467 - ORR1E LTR MaLR -217 142 1 8 1118 193 53 0 73 chr9 69894911 69894952 -54181220 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 8 1118 2356 65 26 0 chr9 69894967 69895273 -54180899 - L1Md_A LINE L1 0 6582 6269 8 1118 582 209 0 0 chr9 69895503 69895642 -54180530 + (TG)n Simple_repeat Simple_repeat 1 139 0 8 1118 238 246 197 0 chr9 69895655 69895716 -54180456 - ID4 SINE ID -9 74 2 8 1118 298 252 171 32 chr9 69895836 69895959 -54180213 + B1F SINE Alu 1 140 -9 8 1118 306 257 14 0 chr9 69896001 69896075 -54180097 + RSINE1 SINE B4 34 108 -57 8 1118 317 200 22 0 chr9 69896385 69896475 -54179697 + GA-rich Low_complexity Low_complexity 1 92 0 8 1118 805 199 144 11 chr9 69896526 69896714 -54179458 + B3 SINE B2 1 213 -3 8 1118 223 254 68 0 chr9 69897094 69897153 -54179019 + ID4 SINE ID 1 63 -20 8 1118 588 302 73 95 chr9 69897761 69898119 -54178053 - LTR37B LTR ERV1 -2 466 117 8 1118 408 91 0 0 chr9 69898524 69898590 -54177582 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 1118 237 33 0 0 chr9 69898620 69898650 -54177522 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1118 475 348 45 0 chr9 69898725 69898903 -54177269 + B4A SINE B4 106 291 -1 8 1118 1897 85 95 10 chr9 69898919 69899215 -54176957 - ORR1A4 LTR MaLR -8 321 1 8 1118 1197 272 3 45 chr9 69899540 69899694 -54176478 - B4 SINE B4 -18 274 92 8 1118 3190 70 5 2 chr9 69899694 69900093 -54176079 - MTB LTR MaLR 0 400 1 8 1118 1197 265 3 42 chr9 69900093 69900254 -54175918 - B4 SINE B4 -130 162 2 8 1118 2263 136 17 9 chr9 69900535 69900884 -54175288 - RLTR14 LTR ERV1 0 382 31 8 1118 393 267 101 65 chr9 69901043 69901291 -54174881 - RLTR15 LTR ERVK -31 328 72 8 1118 444 171 115 54 chr9 69901295 69901425 -54174747 - RLTR15 LTR ERVK -220 139 2 8 1118 1300 254 87 37 chr9 69902174 69902554 -54173618 - MTD LTR MaLR -20 399 1 8 1118 516 184 13 7 chr9 69902649 69902802 -54173370 + (TGGA)n Simple_repeat Simple_repeat 1 154 0 8 1118 275 313 94 13 chr9 69902839 69902988 -54173184 + RSINE1 SINE B4 3 163 -2 8 1118 1270 202 89 47 chr9 69903400 69903759 -54172413 - ORR1D1 LTR MaLR 0 374 1 8 1118 225 94 0 0 chr9 69904183 69904215 -54171957 + (TTC)n Simple_repeat Simple_repeat 2 33 0 8 1118 945 230 53 19 chr9 69904225 69904394 -54171778 - B3 SINE B2 0 216 40 8 1118 1766 172 52 25 chr9 69904394 69904758 -54171414 - ORR1D1 LTR MaLR 0 374 1 8 1118 945 230 53 19 chr9 69904758 69904796 -54171376 - B3 SINE B2 -177 39 2 8 1118 1072 207 9 134 chr9 69904813 69905036 -54171136 - B3 SINE B2 0 195 1 8 1118 21 0 0 0 chr9 69905541 69905562 -54170610 + AT_rich Low_complexity Low_complexity 1 21 0 8 1118 389 204 19 0 chr9 69906495 69906578 -54169594 - PB1D10 SINE Alu -51 98 12 8 1118 837 186 14 0 chr9 69906714 69906854 -54169318 + B1_Mur3 SINE Alu 1 142 -7 8 1118 574 304 30 35 chr9 69906874 69907072 -54169100 + B3 SINE B2 19 215 -1 8 1118 643 292 79 4 chr9 69907090 69907344 -54168828 - L1MB3 LINE L1 -143 6900 6628 8 1118 495 0 0 0 chr9 69907355 69907410 -54168762 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1118 615 275 25 6 chr9 69907700 69907861 -54168311 - RSINE1 SINE B4 -1 164 1 8 1118 288 208 37 0 chr9 69907863 69907972 -54168200 - L1MB3 LINE L1 -3788 3218 3137 8 1118 313 154 0 19 chr9 69907986 69908039 -54168133 - RLTR14 LTR ERV1 -328 54 3 8 1118 448 250 45 0 chr9 69908181 69908293 -54167879 + PB1D9 SINE Alu 2 118 -2 8 1118 591 222 45 111 chr9 69908315 69908334 -54167838 - B2_Mm2 SINE B2 -9 186 165 8 1118 417 81 0 0 chr9 69908334 69908396 -54167776 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1118 758 222 45 111 chr9 69908396 69908574 -54167598 - B3A SINE B2 -27 171 2 8 1118 892 266 114 16 chr9 69908749 69908876 -54167296 - L1MB3 LINE L1 -3979 3029 2884 8 1118 333 0 0 0 chr9 69908876 69908913 -54167259 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 8 1118 892 266 114 16 chr9 69908913 69909225 -54166947 - L1MB3 LINE L1 -4125 2883 2548 8 1118 426 309 52 13 chr9 69909245 69909399 -54166773 - RSINE1 SINE B4 -3 162 3 8 1118 201 129 0 0 chr9 69909405 69909436 -54166736 + (TGG)n Simple_repeat Simple_repeat 1 31 0 8 1118 438 0 32 16 chr9 69909437 69909500 -54166672 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1118 351 257 14 0 chr9 69909514 69909588 -54166584 - B1_Mur4 SINE Alu -67 83 9 8 1118 631 260 0 7 chr9 69909693 69909840 -54166332 + B1_Mur1 SINE Alu 1 146 -3 8 1118 323 138 0 44 chr9 69910184 69910252 -54165920 - Lx2A LINE L1 -9 6999 6935 8 1118 442 277 101 14 chr9 69911328 69911467 -54164705 + ID_B1 SINE B4 73 223 -1 8 1118 4283 29 0 0 chr9 69911644 69912126 -54164046 - LTRIS_Mm LTR ERV1 0 482 1 8 1118 1734 199 10 32 chr9 69912261 69912657 -54163515 - MTC LTR MaLR 0 421 41 8 1118 4714 137 36 129 chr9 69912659 69912891 -54163281 - L1_Mur2 LINE L1 -2037 3840 3602 8 1118 594 248 16 0 chr9 69912891 69913020 -54163152 + MTC LTR MaLR 214 344 -77 8 1118 4714 137 36 129 chr9 69913020 69913729 -54162443 - L1_Mur2 LINE L1 -2037 3601 2870 8 1118 8606 153 3 18 chr9 69913723 69915208 -54160964 + Lx2B LINE L1 5531 6997 -3 8 1118 603 108 35 92 chr9 69915210 69915352 -54160820 - MYSERV6-int LTR ERVK -2444 6515 6382 8 1118 22 0 0 0 chr9 69915683 69915705 -54160467 + AT_rich Low_complexity Low_complexity 1 22 0 8 1118 528 288 0 25 chr9 69915713 69915834 -54160338 + RSINE1 SINE B4 3 120 -45 8 1118 1239 91 51 0 chr9 69915905 69916081 -54160091 + B2_Mm2 SINE B2 2 186 -9 9 1118 799 257 40 0 chr9 69916287 69916489 -54159683 - B3 SINE B2 -6 210 1 9 1118 464 209 76 76 chr9 69916529 69916648 -54159524 - RMER30 DNA MER1_type 0 202 84 9 1118 333 68 0 0 chr9 69916658 69916702 -54159470 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 9 1118 600 234 0 0 chr9 69916706 69916813 -54159359 - RSINE1 SINE B4 -15 150 44 9 1118 273 221 0 0 chr9 69916844 69916912 -54159260 + CT-rich Low_complexity Low_complexity 3 70 0 9 1118 342 0 0 0 chr9 69917039 69917077 -54159095 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1118 554 173 8 0 chr9 69917077 69917210 -54158962 + GA-rich Low_complexity Low_complexity 2 135 0 9 1118 377 263 83 76 chr9 69917380 69917524 -54158648 + L2a LINE L2 3278 3422 -4 9 1118 26 0 0 0 chr9 69918608 69918634 -54157538 + AT_rich Low_complexity Low_complexity 1 26 0 9 1118 2186 185 41 61 chr9 69918876 69919147 -54157025 + RLTR33 LTR ERVK 1 325 -353 9 1118 3431 40 2 0 chr9 69919147 69919542 -54156630 + MTA_Mm LTR MaLR 1 396 0 9 1118 2186 186 20 13 chr9 69919542 69919889 -54156283 + RLTR33 LTR ERVK 326 678 0 9 1118 371 204 25 54 chr9 69919977 69920081 -54156091 + B4A SINE B4 1 96 -69 9 1118 456 19 0 0 chr9 69920088 69920141 -54156031 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 1118 208 321 54 18 chr9 69920509 69920620 -54155552 - L4 LINE RTE -1092 937 823 9 1118 821 124 0 85 chr9 69921344 69921485 -54154687 - B1_Mur1 SINE Alu 0 149 21 9 1118 494 298 50 60 chr9 69921517 69921699 -54154473 - B4A SINE B4 -112 180 1 9 1118 1093 171 40 31 chr9 69922002 69922226 -54153946 - URR1A DNA MER1_type 0 226 1 9 1118 729 286 68 44 chr9 69922708 69923002 -54153170 + MTEb LTR MaLR 7 372 -7 9 1118 1702 234 55 15 chr9 69923164 69923504 -54152668 + MTD LTR MaLR 1 355 -64 9 1118 288 0 0 0 chr9 69923504 69923536 -54152636 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 9 1118 1702 234 55 15 chr9 69923536 69923598 -54152574 + MTD LTR MaLR 356 418 -1 9 1118 278 290 99 10 chr9 69923673 69923774 -54152398 + ORR1D1 LTR MaLR 19 128 -246 9 1118 191 350 29 39 chr9 69924148 69924252 -54151920 - MER5A DNA MER1_type -46 143 41 9 1118 1832 87 7 50 chr9 69924454 69924766 -54151406 - L1_Mus3 LINE L1 0 6638 6360 9 1118 301 329 87 0 chr9 69924840 69924989 -54151183 + MER5B DNA MER1_type 13 174 -4 9 1118 518 308 56 0 chr9 69925261 69925404 -54150768 + RSINE1 SINE B4 3 153 -12 9 1118 396 0 0 0 chr9 69925412 69925456 -54150716 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1118 279 0 0 0 chr9 69925645 69925676 -54150496 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1118 486 309 6 41 chr9 69925761 69925930 -54150242 + ID_B1 SINE B4 54 216 -8 9 1118 796 181 8 0 chr9 69925804 69925937 -54150235 + B1_Mur1 SINE Alu 15 148 -1 9 1118 368 268 0 44 chr9 69926044 69926134 -54150038 + PB1D10 SINE Alu 26 111 -6 9 1118 1656 196 88 20 chr9 69926458 69926812 -54149360 - ORR1C1 LTR MaLR 0 378 1 9 1118 450 0 0 0 chr9 69927197 69927247 -54148925 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1118 385 234 167 26 chr9 69927248 69927362 -54148810 - RSINE1 SINE B4 -14 151 22 9 1118 857 172 0 14 chr9 69927420 69927567 -54148605 + B1_Mus1 SINE Alu 4 148 0 9 1118 297 338 74 74 chr9 69927421 69927584 -54148588 + B4A SINE B4 86 248 -44 9 1118 605 226 44 0 chr9 69928395 69928532 -54147640 + RSINE1 SINE B4 2 144 -21 9 1118 23 54 0 0 chr9 69928568 69928605 -54147567 + AT_rich Low_complexity Low_complexity 1 37 0 9 1118 187 277 61 15 chr9 69928605 69928671 -54147501 + MIR SINE MIR 119 187 -75 9 1118 875 138 7 0 chr9 69928697 69928835 -54147337 + B1_Mur4 SINE Alu 10 148 -2 9 1118 206 231 9 96 chr9 69929234 69929349 -54146823 + T-rich Low_complexity Low_complexity 2 106 0 9 1118 1005 231 24 0 chr9 69929359 69929567 -54146605 - B3 SINE B2 0 216 4 9 1118 579 198 180 30 chr9 69929572 69929739 -54146433 - B3A SINE B2 -6 192 1 9 1118 795 228 0 42 chr9 69929764 69929929 -54146243 - RSINE1 SINE B4 0 165 8 9 1118 210 256 0 0 chr9 69929946 69929989 -54146183 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1118 535 261 86 12 chr9 69929994 69930157 -54146015 - B3 SINE B2 -15 201 27 9 1118 311 0 0 25 chr9 69930157 69930197 -54145975 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1118 936 230 255 29 chr9 69930400 69930781 -54145391 + RMER20B LTR ERVK 125 591 -36 9 1118 194 0 0 37 chr9 69930869 69930896 -54145276 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 9 1118 1240 257 56 17 chr9 69930901 69931082 -54145090 + MTEa LTR MaLR 6 198 -181 9 1118 405 0 0 0 chr9 69931082 69931127 -54145045 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1118 1240 257 56 17 chr9 69931127 69931305 -54144867 + MTEa LTR MaLR 199 379 0 9 1118 297 0 0 0 chr9 69931570 69931603 -54144569 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 9 1118 259 282 0 56 chr9 69931620 69931710 -54144462 - RSINE1 SINE B4 -51 114 30 9 1118 288 0 0 0 chr9 69931753 69931785 -54144387 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1118 4465 50 18 14 chr9 69932555 69933117 -54143055 + LTRIS2 LTR ERV1 1 564 0 9 1118 276 211 0 34 chr9 69933122 69933181 -54142991 - B3 SINE B2 -14 202 146 9 1118 372 22 0 0 chr9 69933219 69933264 -54142908 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1118 494 266 69 53 chr9 69933372 69933708 -54142464 - L1_Mur3 LINE L1 -452 5428 5115 9 1118 491 265 10 0 chr9 69933727 69933851 -54142321 - B1_Mur1 SINE Alu -8 141 16 9 1118 1173 253 139 25 chr9 69933957 69934310 -54141862 + MTD LTR MaLR 3 395 -24 9 1118 403 275 22 45 chr9 69934323 69934499 -54141673 - L1_Mur3 LINE L1 -1449 4694 4514 9 1118 1219 55 0 0 chr9 69934499 69934644 -54141528 - B1_Mm SINE Alu 0 147 3 9 1118 336 208 3 38 chr9 69934644 69934724 -54141448 - L1_Mur3 LINE L1 -1367 4516 4445 9 1118 671 160 115 21 chr9 69934775 69934952 -54141220 + B3 SINE B2 2 177 -18 9 1118 257 322 46 115 chr9 69934967 69935377 -54140795 + RMER10A LTR ERVL 29 410 -32 9 1118 388 235 25 0 chr9 69935400 69935481 -54140691 + RSINE1 SINE B4 79 161 -4 9 1118 597 273 14 34 chr9 69935520 69935668 -54140504 + ID_B1 SINE B4 79 223 -1 9 1118 602 277 40 20 chr9 69935892 69936091 -54140081 + B3 SINE B2 1 203 -13 9 1118 21 0 0 0 chr9 69936114 69936135 -54140037 + AT_rich Low_complexity Low_complexity 1 21 0 9 1118 275 292 52 44 chr9 69936488 69936624 -54139548 - MER5B DNA MER1_type -41 137 1 9 1118 456 19 0 0 chr9 69937235 69937288 -54138884 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1118 198 0 0 0 chr9 69938063 69938085 -54138087 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1118 229 255 35 97 chr9 69938193 69938306 -54137866 - MLT2B5 LTR ERVL -520 197 92 9 1118 282 271 170 50 chr9 69938861 69939079 -54137093 + L1MC4a LINE L1 7311 7667 -328 9 1118 463 241 37 75 chr9 69939085 69939135 -54137037 + CYRA11_Mm Unknown Y-chromosome 131 311 -306 9 1118 832 90 22 29 chr9 69939135 69939273 -54136899 - URR1B DNA MER1_type -3 222 86 9 1118 412 55 0 52 chr9 69939269 69939327 -54136845 + B1_Mus2 SINE Alu 83 137 -10 9 1118 389 200 0 0 chr9 69939346 69939421 -54136751 + L1VL4 LINE L1 197 271 -6031 9 1118 313 291 17 8 chr9 69939535 69939653 -54136519 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 9 1118 27 52 0 17 chr9 69939719 69939748 -54136424 + AT_rich Low_complexity Low_complexity 1 29 0 9 1118 1286 34 0 0 chr9 69939748 69939895 -54136277 - B1_Mm SINE Alu 0 147 1 9 1118 27 52 0 17 chr9 69939895 69939924 -54136248 + AT_rich Low_complexity Low_complexity 1 29 0 9 1118 313 178 72 72 chr9 69939926 69939950 -54136222 + B3A SINE B2 2 19 -179 9 1118 2780 141 5 2 chr9 69939950 69940370 -54135802 + MTC LTR MaLR 1 421 0 9 1118 313 178 72 72 chr9 69940370 69940442 -54135730 + B3A SINE B2 20 97 -101 9 1118 537 68 0 0 chr9 69940443 69940517 -54135655 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 1118 430 224 105 36 chr9 69940756 69940890 -54135282 + RSINE1 SINE B4 1 131 -161 9 1118 311 235 0 29 chr9 69941048 69941118 -54135054 + ID4_ SINE ID 2 69 -14 9 1118 234 0 0 0 chr9 69941644 69941670 -54134502 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 9 1118 659 327 68 53 chr9 69941670 69942025 -54134147 + MLT1J LTR MaLR 100 459 -53 9 1118 721 231 126 14 chr9 69942683 69942887 -54133285 + B3 SINE B2 11 216 0 9 1118 1253 211 126 49 chr9 69943104 69943396 -54132776 + MTE2a LTR MaLR 4 324 -55 9 1118 1265 63 73 22 chr9 69943396 69943574 -54132598 - B2_Mm2 SINE B2 -8 187 1 9 1118 1253 211 126 49 chr9 69943574 69943630 -54132542 + MTE2a LTR MaLR 325 379 0 9 1118 249 329 0 25 chr9 69943660 69943741 -54132431 + GA-rich Low_complexity Low_complexity 2 80 0 9 1118 436 299 102 0 chr9 69944440 69944567 -54131605 + ID_B1 SINE B4 81 220 -4 9 1118 351 181 40 27 chr9 69944807 69944869 -54131303 + MLT1J LTR MaLR 77 139 -373 9 1118 1323 275 29 67 chr9 69944869 69945043 -54131129 + MTEb LTR MaLR 1 174 -205 9 1118 189 0 0 0 chr9 69945043 69945064 -54131108 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 9 1118 1323 275 29 67 chr9 69945064 69945103 -54131069 + MTEb LTR MaLR 175 213 -166 9 1118 1211 102 41 36 chr9 69945103 69945297 -54130875 - B2_Mm2 SINE B2 0 195 1 9 1118 1323 275 29 67 chr9 69945297 69945468 -54130704 + MTEb LTR MaLR 214 371 -8 9 1118 284 253 53 0 chr9 69945732 69945807 -54130365 - ID2 SINE ID 0 83 5 9 1118 873 257 121 57 chr9 69946106 69946370 -54129802 + B4A SINE B4 8 288 -4 9 1118 868 193 88 0 chr9 69946595 69946776 -54129396 + B3A SINE B2 2 198 0 9 1118 347 125 0 0 chr9 69947127 69947175 -54128997 - HAL1-3A_ME LINE L1 -835 2023 1976 9 1118 519 201 0 0 chr9 69947178 69947327 -54128845 + (TG)n Simple_repeat Simple_repeat 2 150 0 1 1118 420 215 0 0 chr9 69947344 69947507 -54128665 + (TG)n Simple_repeat Simple_repeat 2 164 0 1 1118 307 132 19 0 chr9 69947507 69947560 -54128612 - HAL1-3A_ME LINE L1 -830 2028 1975 9 1118 278 107 18 0 chr9 69947568 69947624 -54128548 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1118 653 292 21 90 chr9 69947651 69947845 -54128327 - B4A SINE B4 -18 274 100 1 1118 1104 181 60 0 chr9 69947845 69948044 -54128128 - B3 SINE B2 -5 211 1 1 1118 653 292 21 90 chr9 69948044 69948139 -54128033 - B4A SINE B4 -193 99 5 1 1118 675 210 0 7 chr9 69948663 69948802 -54127370 + HAL1-2a_MD LINE L1 2345 2482 -542 1 1118 2963 139 91 17 chr9 69948912 69949430 -54126742 + RMER4B LTR ERVK 1 556 -29 1 1118 715 215 32 32 chr9 69949529 69949683 -54126489 - RSINE1 SINE B4 0 165 12 1 1118 237 206 213 27 chr9 69949750 69949825 -54126347 + B3A SINE B2 64 152 -46 1 1118 1283 57 0 9 chr9 69949826 69950057 -54126115 + (CA)n Simple_repeat Simple_repeat 1 228 0 1 1118 439 249 119 131 chr9 69950869 69950948 -54125224 + RSINE1 SINE B4 2 80 -212 1 1118 246 282 84 0 chr9 69950948 69951019 -54125153 + B3A SINE B2 1 77 -121 1 1118 439 249 119 131 chr9 69951019 69951212 -54124960 + RSINE1 SINE B4 81 274 -18 1 1118 405 0 0 0 chr9 69951242 69951287 -54124885 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1118 455 260 20 10 chr9 69951293 69951394 -54124778 + RSINE1 SINE B4 3 104 -61 1 1118 435 38 0 0 chr9 69951406 69951459 -54124713 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1118 1064 73 73 0 chr9 69951481 69951631 -54124541 + B2_Mm2 SINE B2 2 162 -33 1 1118 342 0 0 0 chr9 69951631 69951669 -54124503 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 1118 263 301 35 17 chr9 69951739 69951854 -54124318 + GA-rich Low_complexity Low_complexity 4 120 0 1 1118 364 250 60 38 chr9 69951872 69952005 -54124167 + L1MB7 LINE L1 4849 4984 -1162 1 1118 530 235 72 61 chr9 69952015 69952196 -54123976 + B3A SINE B2 3 185 -13 1 1118 231 160 0 0 chr9 69952196 69952246 -54123926 + B3 SINE B2 167 216 0 1 1118 32 26 0 0 chr9 69952316 69952355 -54123817 + AT_rich Low_complexity Low_complexity 1 39 0 1 1118 570 275 82 27 chr9 69952355 69952714 -54123458 + L1MB7 LINE L1 5762 6129 -55 1 1118 423 56 0 0 chr9 69952729 69952783 -54123389 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1118 270 0 0 0 chr9 69952783 69952813 -54123359 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1118 529 279 50 7 chr9 69952822 69952963 -54123209 - B3A SINE B2 -51 147 1 1 1118 387 0 0 0 chr9 69953308 69953351 -54122821 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1118 244 254 0 0 chr9 69953757 69953824 -54122348 + G-rich Low_complexity Low_complexity 1 67 0 1 1118 1310 295 79 19 chr9 69954041 69954469 -54121703 + MT2A LTR ERVL 2 455 -78 1 1118 324 48 0 0 chr9 69954473 69954515 -54121657 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1118 1308 183 5 0 chr9 69954540 69954764 -54121408 + URR1B DNA MER1_type 1 225 0 1 1118 299 285 83 76 chr9 69955046 69955335 -54120837 - L2b LINE L2 -153 3222 2932 1 1118 333 276 61 0 chr9 69955367 69955465 -54120707 + PB1D10 SINE Alu 2 105 -12 1 1118 267 31 0 0 chr9 69955477 69955509 -54120663 + (GGA)n Simple_repeat Simple_repeat 3 34 0 1 1118 732 264 24 87 chr9 69955509 69955716 -54120456 + B3A SINE B2 5 198 0 1 1118 279 79 0 0 chr9 69955716 69955754 -54120418 + (CAGAA)n Simple_repeat Simple_repeat 5 42 0 1 1118 339 234 83 9 chr9 69956704 69956812 -54119360 - MER5A1 DNA MER1_type -7 159 44 1 1118 344 364 52 0 chr9 69956812 69956966 -54119206 + RSINE1 SINE B4 3 164 -1 1 1118 270 0 0 0 chr9 69957482 69957512 -54118660 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1118 450 0 0 0 chr9 69957512 69957561 -54118611 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1118 1430 259 29 3 chr9 69957712 69958053 -54118119 + MTEa LTR MaLR 1 350 -29 1 1118 252 77 0 0 chr9 69958291 69958330 -54117842 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1118 442 229 12 0 chr9 69958337 69958420 -54117752 - B1_Mur1 SINE Alu -17 132 49 1 1118 245 330 8 17 chr9 69958620 69958737 -54117435 - PB1D10 SINE Alu -1 116 1 1 1118 301 233 178 0 chr9 69958844 69958917 -54117255 + PB1D10 SINE Alu 12 97 -20 1 1118 33 25 0 0 chr9 69958968 69959008 -54117164 + AT_rich Low_complexity Low_complexity 1 40 0 1 1118 424 298 37 22 chr9 69959247 69959381 -54116791 - B3A SINE B2 -3 195 60 1 1118 696 35 0 0 chr9 69960446 69960533 -54115639 + (TC)n Simple_repeat Simple_repeat 1 87 0 1 1118 484 287 44 13 chr9 69960942 69961101 -54115071 + ID_B1 SINE B4 1 164 -60 1 1118 592 228 286 5 chr9 69961372 69961589 -54114583 + B4A SINE B4 13 290 -2 1 1118 312 27 0 0 chr9 69961600 69961637 -54114535 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 1118 450 233 12 146 chr9 69961924 69962095 -54114077 - B1_Mur1 SINE Alu -1 148 1 1 1118 225 0 0 0 chr9 69962807 69962832 -54113340 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 1 1118 573 124 0 0 chr9 69962909 69963006 -54113166 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 1118 216 329 88 31 chr9 69963204 69963364 -54112808 + L2 LINE L2 2592 2760 -659 1 1118 281 240 39 26 chr9 69963368 69963445 -54112727 - ID SINE ID -142 82 5 1 1118 359 284 42 10 chr9 69963608 69963704 -54112468 + ID_B1 SINE B4 78 176 -48 1 1118 492 234 37 18 chr9 69963618 69963727 -54112445 + PB1D10 SINE Alu 7 117 0 1 1118 972 153 0 0 chr9 69963768 69963912 -54112260 + B1_Mur4 SINE Alu 2 145 -5 1 1118 649 317 20 15 chr9 69964570 69964772 -54111400 + ID_B1 SINE B4 1 203 -21 1 1118 225 0 0 0 chr9 69964773 69964798 -54111374 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1118 180 0 0 0 chr9 69964798 69964817 -54111355 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1118 477 0 0 0 chr9 69964817 69964869 -54111303 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1118 634 258 73 0 chr9 69964873 69965024 -54111148 + RSINE1 SINE B4 2 163 -2 1 1118 23 33 0 0 chr9 69965024 69965054 -54111118 + AT_rich Low_complexity Low_complexity 1 30 0 1 1118 247 233 83 46 chr9 69965174 69965282 -54110890 + Lx8 LINE L1 7356 7467 -6 1 1118 711 154 265 0 chr9 69965412 69965574 -54110598 + B3 SINE B2 6 210 -6 1 1118 339 246 0 0 chr9 69965599 69965668 -54110504 + ID4 SINE ID 2 70 -13 1 1118 180 235 0 0 chr9 69966179 69966247 -54109925 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1118 649 223 27 44 chr9 69966251 69966434 -54109738 - B3A SINE B2 -16 182 3 1 1118 558 301 42 14 chr9 69966641 69966857 -54109315 + ID_B1 SINE B4 3 224 0 1 1118 497 44 15 0 chr9 69966936 69967004 -54109168 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1118 327 292 83 0 chr9 69967057 69967153 -54109019 + MLT1A LTR MaLR 271 374 0 1 1118 1022 253 5 5 chr9 69967652 69967874 -54108298 - ID_B1 SINE B4 -1 223 2 1 1118 510 242 0 0 chr9 69967931 69968030 -54108142 + ID_B1 SINE B4 113 211 -13 1 1118 251 333 34 51 chr9 69968030 69968048 -54108124 + B1_Mus1 SINE Alu 33 147 -1 1 1118 226 246 35 0 chr9 69968246 69968303 -54107869 + MLT1A1 LTR MaLR 1 59 -349 1 1118 758 271 23 82 chr9 69968365 69968671 -54107501 + B4 SINE B4 5 292 0 1 1118 343 247 0 0 chr9 69968701 69968774 -54107398 + MLT1A1 LTR MaLR 336 408 0 1 1118 230 242 0 99 chr9 69968949 69969050 -54107122 + L1MC LINE L1 5069 5159 -987 1 1118 319 254 0 14 chr9 69969112 69969184 -54106988 + ID_B1 SINE B4 154 224 0 1 1118 264 149 0 0 chr9 69969186 69969233 -54106939 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 1 1118 500 235 30 15 chr9 69969295 69969429 -54106743 + L1MB7 LINE L1 6040 6175 -9 1 1118 552 286 102 5 chr9 69969454 69969651 -54106521 + ID_B1 SINE B4 5 220 -4 1 1118 234 220 33 17 chr9 69970211 69970271 -54105901 + MER110 LTR ERV1 410 470 -21 1 1118 748 233 12 47 chr9 69970285 69970456 -54105716 + RSINE1 SINE B4 1 165 0 1 1118 1147 168 59 5 chr9 69970538 69970742 -54105430 - B3 SINE B2 0 216 2 1 1118 587 200 66 8 chr9 69970743 69970864 -54105308 + ID_B1 SINE B4 93 220 -4 1 1118 618 283 82 0 chr9 69970867 69971051 -54105121 + ID_B1 SINE B4 1 199 -25 1 1118 278 292 3 76 chr9 69971100 69971207 -54104965 + B1F1 SINE Alu 13 114 -6 1 1118 900 282 15 62 chr9 69971215 69971445 -54104727 + B4A SINE B4 2 229 -63 1 1118 2283 187 67 157 chr9 69971445 69972116 -54104056 + RMER19C LTR ERVK 1 611 0 1 1118 1006 208 82 139 chr9 69972120 69972522 -54103650 + MTE2a LTR MaLR 1 379 0 1 1118 900 282 15 62 chr9 69972522 69972558 -54103614 + B4A SINE B4 230 260 -32 1 1118 234 0 0 0 chr9 69975879 69975905 -54100267 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1118 786 283 38 5 chr9 69976249 69976462 -54099710 - ID_B1 SINE B4 -4 220 1 1 1118 389 261 69 0 chr9 69977067 69977197 -54098975 - B1F2 SINE Alu -6 143 5 1 1118 807 278 28 0 chr9 69977858 69978070 -54098102 + ID_B1 SINE B4 2 219 -5 1 1118 737 248 64 29 chr9 69978076 69978280 -54097892 + B3 SINE B2 1 211 -5 1 1118 909 121 7 0 chr9 69978762 69978902 -54097270 + ORR1C1 LTR MaLR 1 141 -237 1 1118 651 244 53 63 chr9 69978908 69979114 -54097058 - B3 SINE B2 -6 210 7 1 1118 972 223 121 34 chr9 69978975 69979115 -54097057 + ORR1C2 LTR MaLR 38 187 -197 1 1118 933 123 0 0 chr9 69979115 69979294 -54096878 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 1118 972 196 138 24 chr9 69979294 69979463 -54096709 + ORR1C2 LTR MaLR 139 353 -31 1 1118 206 245 0 0 chr9 69980061 69980114 -54096058 + A-rich Low_complexity Low_complexity 1 53 0 1 1118 375 234 0 25 chr9 69980595 69980674 -54095498 + ID2 SINE ID 7 83 0 1 1118 605 272 7 13 chr9 69980846 69980995 -54095177 + Lx8 LINE L1 6830 6977 -496 1 1118 337 285 44 56 chr9 69981246 69981406 -54094766 + HAL1-3A_ME LINE L1 1975 2132 -726 1 1118 947 55 212 0 chr9 69981412 69981558 -54094614 - B2_Mm2 SINE B2 -17 178 2 1 1118 692 289 20 0 chr9 69982415 69982612 -54093560 + ID_B1 SINE B4 2 202 -22 1 1118 462 240 25 0 chr9 69982788 69982909 -54093263 + L1MC4 LINE L1 7510 7633 -409 1 1118 333 317 76 9 chr9 69983043 69983148 -54093024 + PB1D7 SINE Alu 1 112 -8 1 1118 342 258 0 0 chr9 69983157 69983223 -54092949 + RSINE1 SINE B4 22 87 -78 1 1118 3113 192 63 18 chr9 69983230 69983909 -54092263 + Lx9 LINE L1 6799 7508 -136 1 1118 216 0 0 0 chr9 69983909 69983933 -54092239 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1118 1105 91 0 0 chr9 69984008 69984151 -54092021 + B1_Mus1 SINE Alu 1 143 -5 1 1118 290 284 148 37 chr9 69984174 69984390 -54091782 + L1MC4 LINE L1 7679 7918 -124 1 1118 238 244 21 75 chr9 69985203 69985296 -54090876 - MER3 DNA MER1_type 0 209 122 1 1118 447 218 0 13 chr9 69985297 69985376 -54090796 + PB1D10 SINE Alu 1 78 -39 1 1118 286 270 0 13 chr9 69985388 69985463 -54090709 - MER3 DNA MER1_type -65 144 71 1 1118 245 339 15 113 chr9 69986052 69986185 -54089987 + MT2B LTR ERVL 132 251 -350 1 1118 378 274 21 0 chr9 69986100 69986195 -54089977 + B1_Mus2 SINE Alu 12 108 -12 1 1118 202 209 0 0 chr9 69986740 69986783 -54089389 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1118 300 383 9 18 chr9 69986812 69986921 -54089251 - RSINE1 SINE B4 -54 111 4 1 1118 216 67 0 0 chr9 69986927 69986957 -54089215 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1118 351 0 0 0 chr9 69987806 69987845 -54088327 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1118 678 218 6 112 chr9 69987945 69988105 -54088067 - RSINE1 SINE B4 -21 144 2 1 1118 432 0 0 0 chr9 69988256 69988304 -54087868 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1118 24 0 0 0 chr9 69989236 69989260 -54086912 + GC_rich Low_complexity Low_complexity 1 24 0 1 1118 27 29 0 0 chr9 69989370 69989404 -54086768 + GC_rich Low_complexity Low_complexity 1 34 0 1 1118 477 0 0 0 chr9 69990236 69990289 -54085883 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1118 528 16 0 0 chr9 69990289 69990349 -54085823 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1118 408 134 30 0 chr9 69990647 69990714 -54085458 + B4 SINE B4 1 69 -223 1 1118 393 75 0 0 chr9 69990733 69990786 -54085386 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1118 354 98 0 0 chr9 69990786 69990837 -54085335 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1118 452 256 24 71 chr9 69990889 69991015 -54085157 + B4 SINE B4 80 199 -93 1 1118 435 38 0 0 chr9 69991069 69991122 -54085050 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1118 463 207 25 49 chr9 69991586 69991708 -54084464 + PB1D7 SINE Alu 2 120 0 1 1118 24 32 0 0 chr9 69992017 69992048 -54084124 + AT_rich Low_complexity Low_complexity 1 31 0 1 1118 447 78 0 0 chr9 69992254 69992318 -54083854 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 139 1179 194 24 5 chr9 69992370 69992582 -54083590 + B3 SINE B2 1 216 0 1 1119 1340 106 21 0 chr9 69992630 69992819 -54083353 + B2_Mm2 SINE B2 2 194 -1 1 1119 333 327 17 52 chr9 69993193 69993230 -54082942 - PB1D10 SINE Alu -3 114 83 1 1119 1958 198 60 8 chr9 69993230 69993628 -54082544 + MTD LTR MaLR 1 419 0 1 1119 333 327 17 52 chr9 69993628 69993706 -54082466 - PB1D10 SINE Alu -35 82 3 1 1119 265 221 136 24 chr9 69993740 69993865 -54082307 - Lx8 LINE L1 -2 7471 7333 1 1119 987 206 15 10 chr9 69993893 69994094 -54082078 - B3 SINE B2 -14 202 1 1 1119 517 196 13 101 chr9 69994169 69994328 -54081844 - Lx8 LINE L1 -359 7114 6970 1 1119 332 220 322 0 chr9 69994545 69994663 -54081509 + RSINE1 SINE B4 4 159 -6 1 1119 34 0 0 0 chr9 69994681 69994715 -54081457 + AT_rich Low_complexity Low_complexity 1 34 0 1 1119 3041 186 158 15 chr9 69995068 69995828 -54080344 - RMER1B Other Other -1 1065 106 1 1119 405 0 0 0 chr9 69995828 69995873 -54080299 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1119 1252 228 120 82 chr9 69995873 69996259 -54079913 - RMER1A Other Other -615 451 28 1 1119 210 208 0 0 chr9 69996756 69996804 -54079368 + (TTAG)n Simple_repeat Simple_repeat 2 49 0 1 1119 862 104 22 29 chr9 69997162 69997301 -54078871 + B1_Mus2 SINE Alu 1 138 -9 1 1119 294 29 0 0 chr9 69997301 69997336 -54078836 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1 1119 243 0 0 0 chr9 69997461 69997488 -54078684 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1119 583 266 14 0 chr9 69997584 69997723 -54078449 + ID_B1 SINE B4 8 148 -76 1 1119 261 258 16 31 chr9 69997740 69997804 -54078368 + tRNA-Ala-GCA tRNA tRNA 4 66 -9 1 1119 334 139 28 0 chr9 69997816 69997888 -54078284 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 1 1119 2073 174 75 5 chr9 69997917 69998303 -54077869 + MTC LTR MaLR 1 413 -8 1 1119 444 290 87 37 chr9 69998331 69998492 -54077680 + ID_B1 SINE B4 56 224 0 1 1119 231 36 0 0 chr9 69998813 69998841 -54077331 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 1 1119 215 364 10 0 chr9 69998845 69998944 -54077228 + MIR SINE MIR 89 188 -74 1 1119 240 35 0 0 chr9 69999274 69999303 -54076869 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1119 373 234 34 93 chr9 69999379 69999497 -54076675 + PB1D10 SINE Alu 1 111 -6 1 1119 448 289 103 7 chr9 69999508 69999644 -54076528 + ID_B1 SINE B4 24 172 -52 1 1119 285 214 36 0 chr9 69999675 69999731 -54076441 + ID4_ SINE ID 19 76 -7 1 1119 358 276 19 19 chr9 70000333 70000440 -54075732 - PB1D10 SINE Alu -8 109 3 1 1119 547 310 15 2 chr9 70000445 70000601 -54075571 + ID_B1 SINE B4 50 203 -21 2 1119 1262 95 15 45 chr9 70000608 70000806 -54075366 + B2_Mm2 SINE B2 2 193 -2 3 1119 544 252 28 41 chr9 70001183 70001328 -54074844 + ID_B1 SINE B4 81 223 -1 4 1119 437 278 27 36 chr9 70001379 70001491 -54074681 + RSINE1 SINE B4 4 114 -51 5 1119 801 171 0 0 chr9 70001500 70001675 -54074497 + CT-rich Low_complexity Low_complexity 2 176 0 6 1119 369 0 0 0 chr9 70001676 70001717 -54074455 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1119 765 239 0 0 chr9 70001758 70001917 -54074255 + B3A SINE B2 2 160 -38 8 1119 1093 83 0 14 chr9 70001986 70002132 -54074040 + B1_Mus1 SINE Alu 5 148 0 9 1119 194 97 30 61 chr9 70002132 70002198 -54073974 + A-rich Low_complexity Low_complexity 3 66 0 1 1119 319 335 78 18 chr9 70003186 70003353 -54072819 - HAL1 LINE L1 -278 2229 2053 1 1119 582 183 0 0 chr9 70003355 70003470 -54072702 + CT-rich Low_complexity Low_complexity 3 117 0 1 1119 903 265 7 88 chr9 70003489 70003762 -54072410 + B4 SINE B4 1 251 -41 1 1119 247 295 115 0 chr9 70003788 70003866 -54072306 - MTE2b LTR MaLR -292 87 1 1 1119 427 271 6 103 chr9 70003881 70004037 -54072135 - MTC LTR MaLR -9 412 272 1 1119 265 269 43 96 chr9 70004067 70004182 -54071990 + BC1_Mm scRNA scRNA 16 124 -28 1 1119 245 262 16 16 chr9 70004253 70004315 -54071857 + B4A SINE B4 85 146 -146 1 1119 385 257 148 0 chr9 70004265 70004366 -54071806 + B1F1 SINE Alu 12 127 -22 1 1119 333 177 18 9 chr9 70004374 70004488 -54071684 + CT-rich Low_complexity Low_complexity 2 116 0 1 1119 24 32 0 0 chr9 70004494 70004525 -54071647 + AT_rich Low_complexity Low_complexity 1 31 0 2 1119 860 130 137 0 chr9 70004627 70004788 -54071384 + B2_Mm2 SINE B2 1 183 -12 2 1119 532 27 27 0 chr9 70004912 70004986 -54071186 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2 1119 373 228 129 0 chr9 70005234 70005335 -54070837 + PB1D10 SINE Alu 4 117 0 2 1119 300 357 0 35 chr9 70005691 70005807 -54070365 + PB1 SINE Alu 5 116 -11 2 1119 576 254 38 8 chr9 70006019 70006150 -54070022 + B3A SINE B2 9 143 -55 2 1119 608 106 0 0 chr9 70006169 70006254 -54069918 - B1_Mus2 SINE Alu 0 147 63 2 1119 194 254 51 0 chr9 70006665 70006724 -54069448 - L3 LINE CR1 -4420 69 8 2 1119 557 247 130 17 chr9 70007004 70007181 -54068991 - B3A SINE B2 -1 197 1 2 1119 914 299 55 14 chr9 70007336 70007611 -54068561 + B4A SINE B4 6 291 -1 2 1119 436 250 11 0 chr9 70007651 70007739 -54068433 - ID SINE ID -135 89 1 3 1119 646 214 47 114 chr9 70008393 70008540 -54067632 - Charlie2b DNA MER1_type -33 2749 2614 3 1119 450 0 0 0 chr9 70008540 70008590 -54067582 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 3 1119 849 245 30 15 chr9 70008590 70008793 -54067379 - ID_B1 SINE B4 -14 210 5 3 1119 646 214 47 114 chr9 70008793 70008855 -54067317 - Charlie2b DNA MER1_type -169 2613 2554 3 1119 614 255 87 7 chr9 70009418 70009568 -54066604 + MTEa LTR MaLR 3 164 -215 3 1119 436 283 86 7 chr9 70009587 70009726 -54066446 + B3 SINE B2 56 205 -11 3 1119 924 301 4 24 chr9 70009760 70010015 -54066157 + B4A SINE B4 1 250 -42 3 1119 267 93 0 0 chr9 70010070 70010113 -54066059 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1119 1181 62 0 0 chr9 70010151 70010297 -54065875 + B1_Mm SINE Alu 2 147 0 3 1119 340 265 68 10 chr9 70010554 70010657 -54065515 - PB1D7 SINE Alu 0 120 12 3 1119 1146 246 191 10 chr9 70010707 70011188 -54064984 - Lx9 LINE L1 -2 7642 7075 4 1119 550 318 50 50 chr9 70011220 70011332 -54064840 + MER74C LTR ERVL 28 134 -326 4 1119 2043 173 79 13 chr9 70011332 70011724 -54064448 + MTD LTR MaLR 2 419 0 4 1119 550 318 50 50 chr9 70011724 70011810 -54064362 + MER74C LTR ERVL 135 226 -234 4 1119 652 246 93 68 chr9 70012178 70012341 -54063831 + B3 SINE B2 7 170 -46 4 1119 402 21 0 0 chr9 70012341 70012388 -54063784 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1119 652 246 93 68 chr9 70012388 70012429 -54063743 + B3 SINE B2 171 216 0 4 1119 733 177 73 24 chr9 70012982 70013178 -54062994 + B3 SINE B2 1 190 -5 4 1119 397 239 71 27 chr9 70013187 70013299 -54062873 - B1F SINE Alu -6 143 27 4 1119 8506 30 2 3 chr9 70013506 70014501 -54061671 - L1Md_F2 LINE L1 -1 6581 5588 4 1119 705 179 56 14 chr9 70014721 70014863 -54061309 - B1_Mur4 SINE Alu -2 148 1 4 1119 194 174 22 0 chr9 70014904 70014950 -54061222 + CT-rich Low_complexity Low_complexity 1 47 0 4 1119 367 302 0 0 chr9 70015977 70016073 -54060099 - PB1D10 SINE Alu -19 98 3 5 1119 558 296 43 13 chr9 70016372 70016605 -54059567 + L1MB8 LINE L1 5895 6134 -44 5 1119 815 182 143 11 chr9 70016867 70017056 -54059116 - B3 SINE B2 -1 215 2 5 1119 1088 80 0 0 chr9 70017316 70017454 -54058718 + B1_Mm SINE Alu 2 139 -8 5 1119 183 100 0 0 chr9 70017454 70017484 -54058688 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 1119 815 225 110 0 chr9 70017601 70017783 -54058389 + B3 SINE B2 5 206 -10 5 1119 1259 219 93 58 chr9 70017785 70018130 -54058042 - MTEa LTR MaLR -20 359 3 5 1119 279 0 0 0 chr9 70018246 70018277 -54057895 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1119 1052 197 315 33 chr9 70018277 70018639 -54057533 - MT2A LTR ERVL -69 464 1 5 1119 280 357 93 6 chr9 70018896 70019068 -54057104 - L2b LINE L2 -92 3283 3097 5 1119 870 282 129 41 chr9 70019199 70019539 -54056633 - ORR1D2 LTR MaLR 0 370 1 6 1119 350 274 5 58 chr9 70019626 70019816 -54056356 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1119 310 225 27 55 chr9 70019873 70020056 -54056116 + (TA)n Simple_repeat Simple_repeat 1 178 0 6 1119 358 326 91 18 chr9 70020133 70020426 -54055746 - L2b LINE L2 -287 3088 2772 5 1119 258 105 0 0 chr9 70020649 70020687 -54055485 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 6 1119 312 276 26 0 chr9 70020806 70020882 -54055290 + ID4_ SINE ID 2 79 -4 6 1119 857 263 5 0 chr9 70020825 70021023 -54055149 + ID_B1 SINE B4 24 222 -2 6 1119 1832 200 192 38 chr9 70021140 70021412 -54054760 + RMER20B LTR ERVK 1 314 -313 6 1119 1210 61 0 0 chr9 70021412 70021559 -54054613 + B1_Mus1 SINE Alu 2 148 0 6 1119 1832 200 192 38 chr9 70021559 70021651 -54054521 + RMER20B LTR ERVK 315 411 -216 6 1119 195 42 0 0 chr9 70021651 70021675 -54054497 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1119 1832 200 192 38 chr9 70021675 70021840 -54054332 + RMER20B LTR ERVK 412 613 -14 6 1119 215 288 49 24 chr9 70022633 70022715 -54053457 - BC1_Mm scRNA scRNA -49 103 20 6 1119 292 264 26 70 chr9 70022720 70022834 -54053338 - MLT1A LTR MaLR -248 126 18 6 1119 485 32 16 0 chr9 70023767 70023830 -54052342 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1119 327 233 13 27 chr9 70023830 70023905 -54052267 - ID_B1 SINE B4 -58 166 93 7 1119 1097 194 13 13 chr9 70024778 70025003 -54051169 + URR1B DNA MER1_type 1 225 0 7 1119 274 289 118 32 chr9 70025146 70025239 -54050933 + ID_B1 SINE B4 123 223 -1 7 1119 180 0 0 0 chr9 70025239 70025259 -54050913 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1119 215 211 37 37 chr9 70025266 70025320 -54050852 + PB1D9 SINE Alu 4 57 -63 7 1119 262 109 21 42 chr9 70025379 70025427 -54050745 + B1_Mur4 SINE Alu 43 89 -61 7 1119 428 268 44 101 chr9 70025553 70025711 -54050461 - B3A SINE B2 -24 174 26 7 1119 413 221 0 0 chr9 70025844 70025921 -54050251 + B3A SINE B2 1 77 -121 7 1119 1394 231 24 139 chr9 70026061 70026484 -54049688 - MTE2a LTR MaLR 0 379 6 7 1119 552 288 8 0 chr9 70026487 70026612 -54049560 + B3A SINE B2 2 127 -71 8 1119 234 0 0 0 chr9 70026613 70026639 -54049533 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1119 827 152 22 7 chr9 70026651 70026790 -54049382 - B1_Mur3 SINE Alu 0 149 9 8 1119 238 192 38 19 chr9 70026818 70026871 -54049301 + ID2 SINE ID 1 54 -29 8 1119 1002 189 8 113 chr9 70027518 70027757 -54048415 - B3 SINE B2 -2 214 1 8 1119 307 231 36 60 chr9 70028638 70028721 -54047451 - B1F SINE Alu -1 148 68 8 1119 407 208 0 14 chr9 70028649 70028722 -54047450 - ID_B1 SINE B4 -8 216 145 8 1119 796 236 14 0 chr9 70028747 70028895 -54047277 - RSINE1 SINE B4 -7 158 9 8 1119 541 246 66 27 chr9 70028872 70029084 -54047088 - ID_B1 SINE B4 -66 226 2 8 1119 26 0 0 0 chr9 70029511 70029537 -54046635 + AT_rich Low_complexity Low_complexity 1 26 0 8 1119 432 0 0 0 chr9 70030203 70030251 -54045921 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1119 785 214 133 0 chr9 70030493 70030689 -54045483 - ID_B1 SINE B4 -1 223 2 9 1119 432 97 0 0 chr9 70030926 70030988 -54045184 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 9 1119 763 54 39 0 chr9 70031177 70031307 -54044865 + (TCTA)n Simple_repeat Simple_repeat 3 137 0 9 1119 319 200 0 91 chr9 70031396 70031473 -54044699 - B4 SINE B4 -131 161 92 9 1119 850 153 0 35 chr9 70031501 70031643 -54044529 - B1_Mur2 SINE Alu -1 148 12 9 1119 571 269 4 176 chr9 70031505 70031674 -54044498 - ID_B1 SINE B4 0 224 74 9 1119 277 265 14 14 chr9 70031674 70031743 -54044429 - ID2 SINE ID -13 70 2 9 1119 571 269 4 176 chr9 70031743 70031817 -54044355 - ID SINE ID -151 73 23 9 1119 265 351 0 0 chr9 70031757 70031831 -54044341 - ID4_ SINE ID -2 81 8 9 1119 276 345 61 30 chr9 70031975 70032172 -54044000 + MIRb SINE MIR 65 267 -1 9 1119 750 245 52 31 chr9 70032367 70032561 -54043611 + B3A SINE B2 1 198 0 1 1119 1227 55 0 0 chr9 70032566 70032712 -54043460 + B1_Mus2 SINE Alu 2 147 0 1 1119 1235 123 11 0 chr9 70032753 70032932 -54043240 + B2_Mm2 SINE B2 1 181 -14 1 1119 391 250 197 8 chr9 70033021 70033138 -54043034 - ID_B1 SINE B4 -84 140 2 1 1119 442 224 119 8 chr9 70033314 70033440 -54042732 + B1F SINE Alu 10 149 0 1 1119 208 333 0 0 chr9 70033712 70033784 -54042388 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1119 350 330 9 18 chr9 70033784 70033898 -54042274 - B4A SINE B4 0 292 180 1 1119 279 273 12 38 chr9 70034117 70034197 -54041975 - RSINE1 SINE B4 -84 81 4 1 1119 1570 216 67 103 chr9 70034408 70034535 -54041637 + MTD LTR MaLR 3 108 -311 1 1119 1216 61 0 0 chr9 70034535 70034682 -54041490 - B1_Mm SINE Alu 0 147 1 1 1119 1570 216 67 103 chr9 70034682 70034748 -54041424 + MTD LTR MaLR 109 170 -249 1 1119 2019 162 132 19 chr9 70034748 70035126 -54041046 + MTC LTR MaLR 1 421 0 1 1119 1570 216 67 103 chr9 70035126 70035349 -54040823 + MTD LTR MaLR 171 405 -14 1 1119 666 161 18 0 chr9 70036006 70036118 -54040054 + MER115 DNA Tip100 470 583 -110 1 1119 432 0 0 0 chr9 70036127 70036175 -54039997 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1119 261 0 0 0 chr9 70036175 70036203 -54039969 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1119 220 182 44 22 chr9 70036205 70036250 -54039922 - B1F1 SINE Alu -55 94 49 1 1119 1382 210 47 79 chr9 70036246 70036587 -54039585 + MTD LTR MaLR 90 419 0 1 1119 470 238 19 0 chr9 70036758 70036863 -54039309 - PB1D10 SINE Alu -6 111 5 1 1119 1214 210 5 0 chr9 70036905 70037119 -54039053 - B3 SINE B2 0 216 2 1 1119 219 103 0 0 chr9 70037125 70037164 -54039008 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1119 811 231 106 11 chr9 70037167 70037355 -54038817 - ID_B1 SINE B4 -13 211 6 1 1119 204 40 0 0 chr9 70037498 70037523 -54038649 + (CAG)n Simple_repeat Simple_repeat 1 25 0 1 1119 557 273 62 0 chr9 70038215 70038343 -54037829 + RSINE1 SINE B4 11 146 -19 1 1119 189 121 0 0 chr9 70038386 70038419 -54037753 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1119 388 218 28 56 chr9 70038421 70038528 -54037644 + B1_Mur1 SINE Alu 46 149 0 1 1119 960 261 72 18 chr9 70038936 70039213 -54036959 - B4A SINE B4 0 292 1 1 1119 941 234 24 5 chr9 70039389 70039595 -54036577 + B4A SINE B4 21 230 -62 1 1119 867 234 50 5 chr9 70039596 70039798 -54036374 + ID_B1 SINE B4 2 212 -12 1 1119 253 312 0 0 chr9 70039969 70040033 -54036139 - tRNA-Ala-GCA tRNA tRNA -9 66 3 1 1119 299 305 99 53 chr9 70040061 70040324 -54035848 - L1MC4a LINE L1 -1975 5907 5633 1 1119 271 259 47 47 chr9 70040377 70040462 -54035710 - ORR1E LTR MaLR 0 379 295 1 1119 337 255 18 36 chr9 70040463 70040573 -54035599 - ORR1E LTR MaLR -251 108 1 1 1119 607 207 166 11 chr9 70040573 70040744 -54035428 - ORR1E-int LTR MaLR -53 1527 1329 1 1119 514 296 18 48 chr9 70040765 70040932 -54035240 + RSINE1 SINE B4 4 165 0 1 1119 1006 116 0 0 chr9 70041011 70041158 -54035014 - B1_Mus1 SINE Alu 0 148 2 1 1119 267 255 6 63 chr9 70041158 70041210 -54034962 - ORR1E-int LTR MaLR -862 647 605 1 1119 354 258 106 67 chr9 70041242 70041276 -54034896 - RSINE1 SINE B4 -12 153 122 1 1119 1050 202 222 14 chr9 70041276 70041623 -54034549 - MTD LTR MaLR 0 419 1 1 1119 354 258 106 67 chr9 70041623 70041692 -54034480 - RSINE1 SINE B4 -44 121 46 1 1119 1151 76 7 0 chr9 70041778 70041923 -54034249 - B1_Mus1 SINE Alu -2 146 1 1 1119 640 132 0 0 chr9 70041925 70042016 -54034156 - 4.5SRNA scRNA scRNA -3 91 1 1 1119 811 203 56 71 chr9 70042039 70042235 -54033937 - B3A SINE B2 -5 193 1 1 1119 986 133 28 0 chr9 70042263 70042406 -54033766 + B1_Mur4 SINE Alu 1 147 -3 1 1119 1020 252 111 7 chr9 70042437 70042725 -54033447 - ORR1E LTR MaLR -36 323 6 1 1119 272 246 0 42 chr9 70043275 70043347 -54032825 - ID4_ SINE ID -6 77 9 1 1119 1400 51 81 5 chr9 70043375 70043572 -54032600 + L1Md_F3 LINE L1 6373 6584 0 1 1119 389 234 54 135 chr9 70043587 70043603 -54032569 + B4 SINE B4 76 211 -81 1 1119 828 168 0 8 chr9 70043603 70043735 -54032437 + B1_Mus2 SINE Alu 2 132 -15 1 1119 222 37 0 0 chr9 70043746 70043773 -54032399 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1119 907 176 0 0 chr9 70043849 70043991 -54032181 - B1_Mur2 SINE Alu -7 142 1 1 1119 322 108 31 0 chr9 70044043 70044108 -54032064 + (TTTTA)n Simple_repeat Simple_repeat 1 67 0 1 1119 458 256 0 57 chr9 70044108 70044232 -54031940 - PB1D10 SINE Alu 0 117 1 1 1119 854 254 12 0 chr9 70044232 70044295 -54031877 - ID SINE ID -143 81 17 1 1119 233 175 0 0 chr9 70044615 70044655 -54031517 + ID4_ SINE ID 44 83 0 1 1119 3655 147 7 33 chr9 70044796 70045406 -54030766 - RLTR17 LTR ERVK 0 692 99 1 1119 939 257 71 20 chr9 70045428 70045682 -54030490 + B4 SINE B4 19 285 -7 1 1119 207 0 0 0 chr9 70045690 70045713 -54030459 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1119 387 193 0 0 chr9 70046108 70046191 -54029981 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1119 999 286 10 72 chr9 70046208 70046513 -54029659 - B4 SINE B4 -4 288 3 1 1119 338 280 43 11 chr9 70046525 70046619 -54029553 - PB1D10 SINE Alu -10 107 11 1 1119 441 54 0 0 chr9 70047063 70047119 -54029053 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1119 335 294 88 75 chr9 70047175 70047414 -54028758 + Tigger15a DNA TcMar 402 643 -72 1 1119 458 298 40 75 chr9 70047438 70047612 -54028560 + ID_B1 SINE B4 2 169 -55 1 1119 237 294 105 32 chr9 70047535 70047630 -54028542 + PB1D10 SINE Alu 7 108 -9 1 1119 430 200 111 28 chr9 70047649 70047757 -54028415 + RSINE1 SINE B4 19 135 -30 1 1119 773 256 12 0 chr9 70047952 70048112 -54028060 + B3A SINE B2 1 162 -36 1 1119 559 329 0 7 chr9 70048466 70048613 -54027559 + RSINE1 SINE B4 13 158 -7 1 1119 881 212 31 27 chr9 70048892 70049091 -54027081 - ID_B1 SINE B4 -47 245 53 1 1119 671 0 13 0 chr9 70049108 70049187 -54026985 + (CCCCAG)n Simple_repeat Simple_repeat 5 84 0 1 1119 515 192 50 0 chr9 70049430 70049529 -54026643 - B1_Mur4 SINE Alu -22 128 25 1 1119 1524 221 92 11 chr9 70050300 70050648 -54025524 + MTD LTR MaLR 44 419 0 1 1119 648 236 29 68 chr9 70050673 70050878 -54025294 - B3A SINE B2 -1 197 1 1 1119 525 250 10 0 chr9 70050930 70051030 -54025142 + RSINE1 SINE B4 19 119 -46 1 1119 336 94 0 0 chr9 70051030 70051083 -54025089 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1119 234 0 0 0 chr9 70051134 70051160 -54025012 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1119 248 302 58 11 chr9 70051250 70051337 -54024835 + PB1 SINE Alu 21 111 -16 1 1119 267 31 0 0 chr9 70051906 70051938 -54024234 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 1 1119 273 57 0 0 chr9 70052017 70052052 -54024120 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1119 851 250 10 30 chr9 70052060 70052258 -54023914 - ID_B1 SINE B4 -29 195 2 1 1119 255 125 0 0 chr9 70052263 70052303 -54023869 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1119 532 155 24 3 chr9 70052303 70052400 -54023772 + B1_Mur3 SINE Alu 24 149 0 1 1119 21 36 0 0 chr9 70052441 70052469 -54023703 + AT_rich Low_complexity Low_complexity 1 28 0 1 1119 225 188 16 172 chr9 70052507 70052629 -54023543 - RMER17C LTR ERVK -130 280 178 1 1119 324 171 31 163 chr9 70052874 70052972 -54023200 - PB1 SINE Alu -2 125 36 1 1119 387 274 9 70 chr9 70052965 70053079 -54023093 - B3 SINE B2 -108 108 2 1 1119 664 257 89 56 chr9 70053094 70053308 -54022864 - B4 SINE B4 -69 223 3 1 1119 589 200 50 0 chr9 70053470 70053590 -54022582 + RSINE1 SINE B4 11 136 -29 1 1119 297 314 99 36 chr9 70053633 70053996 -54022176 - L1MB7 LINE L1 -24 6160 5775 1 1119 251 54 0 26 chr9 70054315 70054342 -54021830 + (TTC)n Simple_repeat Simple_repeat 1 27 0 1 1119 1410 56 0 0 chr9 70054342 70054522 -54021650 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1119 251 54 0 26 chr9 70054522 70054532 -54021640 + (TTC)n Simple_repeat Simple_repeat 3 12 0 1 1119 713 93 9 0 chr9 70054528 70054635 -54021537 + (TC)n Simple_repeat Simple_repeat 2 109 0 1 1119 281 135 19 0 chr9 70054702 70054754 -54021418 + GA-rich Low_complexity Low_complexity 4 56 0 1 1119 861 235 95 71 chr9 70057770 70058137 -54018035 + MTEb LTR MaLR 1 376 -3 1 1119 252 0 0 0 chr9 70058137 70058165 -54018007 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1119 539 66 13 0 chr9 70058179 70058255 -54017917 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1119 243 0 0 0 chr9 70058860 70058887 -54017285 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1 1119 805 179 8 0 chr9 70058888 70059022 -54017150 - B1_Mus2 SINE Alu -12 135 1 1 1119 398 200 75 0 chr9 70060226 70060306 -54015866 - B1F1 SINE Alu -63 86 1 1 1119 44 56 0 0 chr9 70060429 70060501 -54015671 + AT_rich Low_complexity Low_complexity 1 72 0 1 1119 866 222 10 77 chr9 70060511 70060706 -54015466 - B3 SINE B2 -34 182 1 1 1119 834 159 15 0 chr9 70060854 70060986 -54015186 - B1_Mus1 SINE Alu 0 148 15 1 1119 464 263 44 164 chr9 70060860 70061110 -54015062 - B4 SINE B4 -72 220 1 1 1119 656 231 76 14 chr9 70061541 70061686 -54014486 - RSINE1 SINE B4 -8 157 4 1 1119 226 274 94 10 chr9 70061708 70061804 -54014368 + MARNA DNA Mariner 192 295 -291 1 1119 818 239 158 16 chr9 70062063 70062310 -54013862 + B4A SINE B4 3 284 -8 2 1119 591 15 0 0 chr9 70062329 70062397 -54013775 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1119 834 257 38 14 chr9 70062430 70062639 -54013533 + ID_B1 SINE B4 2 215 -9 2 1119 236 86 145 65 chr9 70063983 70064045 -54012127 - Charlie24 DNA MER1_type -71 2379 2313 2 1119 630 49 0 0 chr9 70064276 70064358 -54011814 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 1119 408 282 112 75 chr9 70064412 70064734 -54011438 - MLT1H2 LTR MaLR -99 390 57 2 1119 432 0 0 0 chr9 70065436 70065484 -54010688 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1119 477 198 16 90 chr9 70065502 70065624 -54010548 - PB1D10 SINE Alu 0 117 5 2 1119 692 252 14 7 chr9 70066040 70066184 -54009988 + RSINE1 SINE B4 18 162 -3 2 1119 557 176 167 0 chr9 70066209 70066317 -54009855 - B1_Mm SINE Alu -8 139 14 2 1119 246 62 0 0 chr9 70066345 70066377 -54009795 + (GGA)n Simple_repeat Simple_repeat 2 33 0 2 1119 1117 62 7 40 chr9 70066582 70066734 -54009438 + B1_Mus1 SINE Alu 2 148 0 2 1119 1588 229 61 41 chr9 70067041 70067452 -54008720 - MTD LTR MaLR 0 419 1 2 1119 878 124 8 0 chr9 70068159 70068288 -54007884 + B3 SINE B2 1 130 -86 2 1119 203 0 37 0 chr9 70068323 70068350 -54007822 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2 1119 835 230 21 73 chr9 70068372 70068606 -54007566 + B4 SINE B4 9 230 -62 2 1119 228 35 0 0 chr9 70068608 70068637 -54007535 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1119 215 158 88 0 chr9 70068935 70068992 -54007180 + A-rich Low_complexity Low_complexity 2 63 0 2 1119 825 264 86 9 chr9 70069003 70069236 -54006936 + B4A SINE B4 31 281 -11 2 1119 253 182 71 18 chr9 70069287 70069343 -54006829 + ID4 SINE ID 2 60 -23 2 1119 734 181 39 0 chr9 70069394 70069521 -54006651 + B1_Mur2 SINE Alu 5 136 -13 2 1119 315 0 0 0 chr9 70069523 70069558 -54006614 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1119 1000 80 29 7 chr9 70071373 70071512 -54004660 + B1_Mus1 SINE Alu 2 143 -5 2 1119 375 270 87 162 chr9 70072215 70072524 -54003648 + B4 SINE B4 7 292 0 2 1119 271 280 87 29 chr9 70072840 70072943 -54003229 + MER5A1 DNA MER1_type 26 134 -32 2 1119 401 156 0 61 chr9 70073326 70073408 -54002764 + PB1D9 SINE Alu 43 119 -1 2 1119 345 221 657 52 chr9 70073406 70073541 -54002631 + B4 SINE B4 72 288 -4 2 1119 228 290 27 68 chr9 70073622 70073639 -54002533 + ID4_ SINE ID 2 72 -11 2 1119 252 246 35 0 chr9 70073639 70073696 -54002476 + tRNA-Ala-GCA tRNA tRNA 8 66 -9 2 1119 972 94 7 21 chr9 70073943 70074084 -54002088 - B1_Mus2 SINE Alu 0 147 9 2 1119 544 260 12 94 chr9 70074125 70074295 -54001877 - RSINE1 SINE B4 -2 163 8 2 1119 21 0 0 0 chr9 70074499 70074520 -54001652 + AT_rich Low_complexity Low_complexity 1 21 0 2 1119 2376 82 19 12 chr9 70074580 70074900 -54001272 - ORR1A2 LTR MaLR 0 327 6 2 1119 378 0 0 0 chr9 70074912 70074954 -54001218 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1119 489 290 53 0 chr9 70075039 70075170 -54001002 - ID_B1 SINE B4 -1 223 86 2 1119 247 203 78 39 chr9 70075260 70075337 -54000835 - ID2 SINE ID -2 81 2 2 1119 21 36 0 0 chr9 70075379 70075407 -54000765 + AT_rich Low_complexity Low_complexity 1 28 0 2 1119 922 123 23 0 chr9 70075683 70075813 -54000359 + B1_Mur2 SINE Alu 4 136 -13 2 1119 456 212 83 17 chr9 70076460 70076580 -53999592 + B1F2 SINE Alu 1 128 -21 2 1119 276 282 0 60 chr9 70077020 70077103 -53999069 + MER5B DNA MER1_type 99 176 -2 2 1119 648 261 96 43 chr9 70077132 70077320 -53998852 + ID_B1 SINE B4 6 203 -21 2 1119 325 234 52 0 chr9 70078140 70078217 -53997955 - B1F1 SINE Alu -50 99 19 2 1119 366 23 0 0 chr9 70078219 70078262 -53997910 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 1119 1166 53 33 0 chr9 70078262 70078414 -53997758 - B2_Mm2 SINE B2 -38 157 1 2 1119 527 238 58 58 chr9 70078417 70078555 -53997617 - B1F2 SINE Alu -1 148 11 2 1119 236 256 77 55 chr9 70078969 70079060 -53997112 - RSINE1 SINE B4 -28 137 45 2 1119 928 110 0 0 chr9 70079010 70079137 -53997035 - B1_Mus1 SINE Alu -21 127 1 2 1119 201 121 0 0 chr9 70079138 70079171 -53997001 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 2 1119 739 279 40 40 chr9 70079172 70079396 -53996776 - ID_B1 SINE B4 0 224 1 2 1119 345 100 0 0 chr9 70080907 70080957 -53995215 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 2 1119 1138 76 0 0 chr9 70080963 70081107 -53995065 - B1_Mus1 SINE Alu -3 145 2 2 1119 288 206 152 54 chr9 70081479 70081575 -53994597 - PB1D10 SINE Alu -1 116 14 2 1119 198 0 0 0 chr9 70081596 70081618 -53994554 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2 1119 592 244 14 56 chr9 70081635 70081778 -53994394 - RSINE1 SINE B4 -17 148 12 2 1119 928 234 134 64 chr9 70082766 70083154 -53993018 + MTD LTR MaLR 1 415 -4 2 1119 286 230 0 98 chr9 70083209 70083291 -53992881 - ID4 SINE ID -8 75 2 2 1119 419 235 47 100 chr9 70083572 70083742 -53992430 + RSINE1 SINE B4 5 165 0 2 1119 460 160 20 0 chr9 70083742 70083842 -53992330 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 1119 847 238 30 89 chr9 70083926 70084161 -53992011 - ID_B1 SINE B4 -2 222 2 2 1119 614 258 173 20 chr9 70084614 70084863 -53991309 + B4A SINE B4 4 290 -2 2 1119 405 0 0 0 chr9 70085247 70085292 -53990880 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1119 432 0 0 0 chr9 70085293 70085341 -53990831 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1119 549 267 145 0 chr9 70085345 70085476 -53990696 - B3A SINE B2 -46 152 3 2 1119 1110 240 68 4 chr9 70086203 70086466 -53989706 + B4 SINE B4 8 287 -5 2 1119 291 259 12 24 chr9 70086502 70086585 -53989587 + ID4 SINE ID 2 83 0 2 1119 1142 87 128 0 chr9 70087191 70087363 -53988809 - B2_Mm2 SINE B2 -1 194 1 2 1119 686 251 66 51 chr9 70087365 70087449 -53988723 - ID_B1 SINE B4 -2 222 135 2 1119 243 103 0 0 chr9 70087449 70087488 -53988684 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 1119 686 251 66 51 chr9 70087488 70087600 -53988572 - ID_B1 SINE B4 -90 134 24 2 1119 336 254 0 15 chr9 70087539 70087607 -53988565 - ID4 SINE ID -2 81 15 2 1119 942 43 0 0 chr9 70088043 70088158 -53988014 + B2_Mm2 SINE B2 50 164 -31 2 1119 618 201 168 18 chr9 70088292 70088459 -53987713 + B3A SINE B2 1 192 -6 2 1119 414 57 0 0 chr9 70090695 70090748 -53985424 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1119 512 216 45 9 chr9 70091660 70091772 -53984400 + B3A SINE B2 1 116 -82 2 1119 504 0 0 0 chr9 70091782 70091838 -53984334 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1119 212 322 74 50 chr9 70091964 70092085 -53984087 - RSINE1 SINE B4 -1 164 41 2 1119 216 209 23 0 chr9 70092227 70092270 -53983902 + CT-rich Low_complexity Low_complexity 4 47 0 2 1119 1054 176 109 0 chr9 70092355 70092548 -53983624 + B3 SINE B2 1 214 -2 2 1119 513 279 0 28 chr9 70092850 70092994 -53983178 + ID_B1 SINE B4 63 202 -22 2 1119 220 333 43 0 chr9 70093314 70093383 -53982789 - ID4 SINE ID -8 75 4 2 1119 402 21 0 0 chr9 70093429 70093476 -53982696 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 2 1119 897 154 7 0 chr9 70093476 70093612 -53982560 - B1_Mur4 SINE Alu -13 137 1 2 1119 1032 194 48 19 chr9 70093669 70093879 -53982293 + B3 SINE B2 1 216 0 2 1119 938 227 20 0 chr9 70094721 70094924 -53981248 - B3 SINE B2 -9 207 1 2 1119 261 0 0 0 chr9 70095192 70095221 -53980951 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1119 369 0 0 0 chr9 70095221 70095261 -53980911 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1119 548 260 32 8 chr9 70095271 70095395 -53980777 - RSINE1 SINE B4 -10 155 29 2 1119 708 206 23 21 chr9 70095533 70095702 -53980470 + B3 SINE B2 14 193 -2 2 1119 720 89 0 0 chr9 70095702 70095803 -53980369 + (GGGA)n Simple_repeat Simple_repeat 4 104 0 2 1119 655 255 57 0 chr9 70096016 70096208 -53979964 + B3 SINE B2 1 203 -13 2 1119 1207 62 0 0 chr9 70096227 70096373 -53979799 + B1_Mus2 SINE Alu 1 146 -1 2 1119 451 254 176 32 chr9 70096383 70096570 -53979602 - B3 SINE B2 -2 214 1 2 1119 1046 202 36 5 chr9 70097160 70097354 -53978818 - B3 SINE B2 -14 202 3 2 1119 366 23 0 0 chr9 70098086 70098129 -53978043 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1119 819 0 0 0 chr9 70098497 70098588 -53977584 + (TC)n Simple_repeat Simple_repeat 1 91 0 2 1119 315 0 0 0 chr9 70098764 70098799 -53977373 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1119 267 246 16 0 chr9 70098816 70098877 -53977295 + RSINE1 SINE B4 79 140 -25 2 1119 275 122 0 20 chr9 70098877 70098927 -53977245 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 1119 719 289 29 0 chr9 70099290 70099498 -53976674 - ID_B1 SINE B4 -9 215 2 2 1119 742 204 75 87 chr9 70100240 70100325 -53975847 + B3 SINE B2 55 139 -77 2 1119 1961 52 105 0 chr9 70100325 70100573 -53975599 - L1_Mus1 LINE L1 0 6567 6294 2 1119 742 204 75 87 chr9 70100573 70100648 -53975524 + B3 SINE B2 140 213 -3 2 1119 330 248 13 22 chr9 70100880 70100974 -53975198 + ID4_ SINE ID 7 96 -56 3 1119 694 260 155 4 chr9 70101310 70101542 -53974630 + MER2 DNA MER2_type 58 324 -21 3 1119 256 242 21 0 chr9 70102103 70102198 -53973974 + CT-rich Low_complexity Low_complexity 4 100 0 3 1119 829 187 45 0 chr9 70102312 70102467 -53973705 - B3 SINE B2 -4 212 51 3 1119 806 244 25 25 chr9 70102465 70102744 -53973428 + MTD LTR MaLR 77 370 0 3 1119 808 261 199 25 chr9 70103211 70103533 -53972639 - MTEa LTR MaLR 0 379 2 3 1119 234 80 0 167 chr9 70103816 70103856 -53972316 + A-rich Low_complexity Low_complexity 1 31 0 3 1119 1160 62 0 7 chr9 70103856 70104003 -53972169 + B1_Mus2 SINE Alu 2 147 0 3 1119 234 80 0 167 chr9 70104003 70104022 -53972150 + A-rich Low_complexity Low_complexity 32 50 0 3 1119 268 111 67 0 chr9 70104041 70104086 -53972086 - MTE2b LTR MaLR -70 309 262 3 1119 746 248 84 75 chr9 70104274 70104501 -53971671 - B4 SINE B4 -51 241 13 3 1119 189 107 0 0 chr9 70104577 70104605 -53971567 + (CACCC)n Simple_repeat Simple_repeat 3 30 0 3 1119 334 232 109 20 chr9 70104763 70104864 -53971308 + PB1 SINE Alu 18 127 0 3 1119 266 297 176 35 chr9 70105079 70105306 -53970866 - MLT1J LTR MaLR -149 363 105 3 1119 333 0 0 0 chr9 70105306 70105343 -53970829 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1119 271 349 137 27 chr9 70105692 70105992 -53970180 + MER90a LTR ERV1 130 462 -152 3 1119 207 313 0 78 chr9 70106163 70106253 -53969919 + MIR SINE MIR 85 167 -95 3 1119 303 300 0 0 chr9 70106377 70106467 -53969705 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 1119 354 328 8 8 chr9 70106632 70106755 -53969417 - B4 SINE B4 -169 123 1 3 1119 632 213 71 117 chr9 70107898 70108095 -53968077 - B3A SINE B2 0 198 11 3 1119 874 236 116 51 chr9 70110011 70110381 -53965791 + L1MC4 LINE L1 7259 7652 -390 3 1119 615 27 0 0 chr9 70110817 70110890 -53965282 + (GGGA)n Simple_repeat Simple_repeat 2 74 0 3 1119 185 296 54 40 chr9 70112201 70112275 -53963897 - L2b LINE L2 -4 3371 3297 3 1119 228 135 0 0 chr9 70113165 70113202 -53962970 + (TCC)n Simple_repeat Simple_repeat 1 37 0 3 1119 946 138 0 14 chr9 70113235 70113382 -53962790 - B1_Mus1 SINE Alu -1 147 3 3 1119 588 237 64 7 chr9 70113440 70113580 -53962592 - RSINE1 SINE B4 -15 150 3 3 1119 820 126 40 47 chr9 70113873 70114023 -53962149 - B1_Mur4 SINE Alu 0 150 2 3 1119 224 308 168 12 chr9 70114100 70114261 -53961911 - B2_Mm2 SINE B2 0 195 10 3 1119 456 333 88 0 chr9 70114119 70114266 -53961906 - RSINE1 SINE B4 0 165 6 3 1119 2917 46 0 6 chr9 70114283 70114631 -53961541 - ORR1A1 LTR MaLR 0 346 1 3 1119 1146 117 0 0 chr9 70114715 70114894 -53961278 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 1119 336 180 0 32 chr9 70114907 70114970 -53961202 - B4 SINE B4 -207 85 25 3 1119 359 296 129 52 chr9 70115354 70115564 -53960608 + L2a LINE L2 3200 3425 -1 3 1119 1322 84 39 16 chr9 70115625 70115807 -53960365 - B2_Mm2 SINE B2 -9 186 1 3 1119 674 272 0 0 chr9 70115817 70115953 -53960219 - ID_B1 SINE B4 -6 218 83 3 1119 298 263 26 0 chr9 70116269 70116345 -53959827 + MIRb SINE MIR 154 231 -37 3 1119 450 0 0 0 chr9 70116369 70116419 -53959753 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1119 180 158 0 0 chr9 70116419 70116457 -53959715 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1119 249 241 52 0 chr9 70116479 70116537 -53959635 - RSINE1 SINE B4 -17 148 88 3 1119 462 278 79 8 chr9 70116622 70116749 -53959423 - B4A SINE B4 -156 136 1 3 1119 349 230 157 20 chr9 70117654 70117756 -53958416 + PB1D10 SINE Alu 1 116 -1 3 1119 453 19 0 0 chr9 70117771 70117825 -53958347 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 3 1119 1181 200 43 14 chr9 70117936 70118215 -53957957 + B4 SINE B4 5 291 -1 3 1119 1128 206 9 23 chr9 70118234 70118453 -53957719 - B3 SINE B2 0 216 1 3 1119 355 221 23 0 chr9 70118547 70118633 -53957539 - PB1D10 SINE Alu -26 91 4 3 1119 529 231 129 0 chr9 70119606 70119753 -53956419 + B4 SINE B4 1 166 -126 3 1119 290 174 0 28 chr9 70120197 70120268 -53955904 + CT-rich Low_complexity Low_complexity 4 72 0 3 1119 267 316 69 121 chr9 70120965 70120984 -53955188 + B4 SINE B4 77 151 -141 3 1119 503 234 52 45 chr9 70120984 70121118 -53955054 + B1_Mur1 SINE Alu 9 143 -6 3 1119 267 316 69 121 chr9 70121118 70121138 -53955034 + B4 SINE B4 152 241 -51 3 1119 240 295 350 0 chr9 70121222 70121318 -53954854 + RSINE1 SINE B4 3 134 -31 3 1119 423 0 0 0 chr9 70121318 70121365 -53954807 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1119 218 294 88 0 chr9 70121365 70121391 -53954781 + RSINE1 SINE B4 135 160 -5 3 1119 1321 113 5 0 chr9 70121521 70121706 -53954466 - B2_Mm1t SINE B2 -7 186 1 3 1119 254 358 107 8 chr9 70121784 70121905 -53954267 + MIR3 SINE MIR 28 160 -48 3 1119 880 276 15 23 chr9 70121990 70122250 -53953922 + B4 SINE B4 12 269 -23 3 1119 298 264 0 44 chr9 70122304 70122395 -53953777 + ID SINE ID 3 89 -135 3 1120 388 297 80 98 chr9 70123751 70123874 -53952298 - Lx9 LINE L1 -3 7470 7350 3 1120 546 57 0 0 chr9 70123874 70123944 -53952228 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1120 518 311 119 46 chr9 70123944 70124375 -53951797 - Lx9 LINE L1 -152 7492 7009 3 1120 970 265 65 0 chr9 70124387 70124647 -53951525 + B4A SINE B4 2 278 -14 3 1120 29 70 0 0 chr9 70124798 70124855 -53951317 + AT_rich Low_complexity Low_complexity 1 57 0 3 1120 231 152 189 9 chr9 70124893 70124999 -53951173 - RMER17D LTR ERVK -372 517 393 3 1120 564 229 122 103 chr9 70125009 70125189 -53950983 - ID_B1 SINE B4 -15 209 40 3 1120 333 0 0 0 chr9 70125189 70125226 -53950946 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 3 1120 564 229 122 103 chr9 70125226 70125249 -53950923 - ID SINE ID -185 39 4 3 1120 298 250 0 56 chr9 70126028 70126100 -53950072 + ID_B1 SINE B4 133 200 -24 3 1120 561 224 9 0 chr9 70126293 70126400 -53949772 - PB1D7 SINE Alu -12 108 1 3 1120 351 0 0 0 chr9 70126777 70126816 -53949356 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1120 21 0 0 0 chr9 70126923 70126944 -53949228 + AT_rich Low_complexity Low_complexity 1 21 0 3 1120 262 300 0 14 chr9 70126949 70127020 -53949152 - MIRm SINE MIR 0 276 207 3 1120 225 0 0 0 chr9 70127223 70127248 -53948924 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 1120 213 39 0 0 chr9 70127248 70127273 -53948899 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1120 915 75 0 0 chr9 70127273 70127405 -53948767 + (GA)n Simple_repeat Simple_repeat 2 134 0 3 1120 450 0 0 0 chr9 70128072 70128122 -53948050 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1120 353 306 86 126 chr9 70128128 70128375 -53947797 - B4 SINE B4 -25 267 27 3 1120 21 0 0 0 chr9 70128423 70128444 -53947728 + AT_rich Low_complexity Low_complexity 1 21 0 3 1120 1074 134 25 0 chr9 70128501 70128658 -53947514 - B2_Mm2 SINE B2 -34 161 1 3 1120 1073 215 9 0 chr9 70128683 70128897 -53947275 - B3 SINE B2 0 216 1 3 1120 812 186 7 0 chr9 70128936 70129076 -53947096 - B1_Mur3 SINE Alu -8 141 1 3 1120 459 92 0 0 chr9 70129478 70129543 -53946629 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1120 432 0 0 0 chr9 70130185 70130233 -53945939 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1120 252 0 0 0 chr9 70130233 70130260 -53945912 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1120 27 62 0 0 chr9 70130539 70130587 -53945585 + AT_rich Low_complexity Low_complexity 1 48 0 3 1120 249 159 0 0 chr9 70130885 70130929 -53945243 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1120 878 193 94 0 chr9 70131072 70131264 -53944908 - B3 SINE B2 -5 211 2 3 1120 253 279 112 12 chr9 70131723 70131803 -53944369 - Tigger5 DNA MER2_type -2281 125 38 3 1120 889 184 75 0 chr9 70131929 70132103 -53944069 + ID_B1 SINE B4 1 187 -37 3 1120 270 0 0 0 chr9 70132418 70132448 -53943724 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1120 383 113 14 0 chr9 70133301 70133372 -53942800 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 1120 349 292 19 0 chr9 70133384 70133490 -53942682 - PB1D10 SINE Alu -9 108 1 3 1120 215 310 70 0 chr9 70134211 70134282 -53941890 - MIR SINE MIR -71 191 116 3 1120 743 263 54 25 chr9 70134282 70134485 -53941687 + ID_B1 SINE B4 6 214 -10 3 1120 23 0 0 0 chr9 70135604 70135627 -53940545 + AT_rich Low_complexity Low_complexity 1 23 0 3 1120 596 142 212 0 chr9 70135984 70136097 -53940075 - B1_Mur1 SINE Alu -8 141 5 3 1120 391 161 0 0 chr9 70136192 70136254 -53939918 - B3A SINE B2 -136 62 1 3 1120 417 239 75 27 chr9 70136259 70136405 -53939767 - L1MA7 LINE L1 -32 6259 6107 3 1120 1671 42 0 0 chr9 70136841 70137033 -53939139 - B2_Mm1a SINE B2 -1 192 1 3 1120 328 206 168 84 chr9 70137151 70137294 -53938878 - RLTR42-int LTR ERVK -4135 1387 1233 3 1120 237 65 0 0 chr9 70137366 70137397 -53938775 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1120 688 106 221 0 chr9 70137397 70137510 -53938662 - B1_Mur4 SINE Alu -11 139 2 3 1120 405 39 0 0 chr9 70137971 70138022 -53938150 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1120 954 244 5 5 chr9 70138023 70138225 -53937947 - B4A SINE B4 -88 204 3 3 1120 539 240 101 53 chr9 70139832 70140039 -53936133 + ID_B1 SINE B4 2 218 -6 3 1120 855 211 29 82 chr9 70140050 70140257 -53935915 + B3A SINE B2 2 197 -1 3 1120 395 231 125 36 chr9 70140428 70140540 -53935632 - RSINE1 SINE B4 -43 122 1 4 1120 286 262 127 64 chr9 70140540 70140648 -53935524 - Charlie18a DNA MER1_type -224 118 4 4 1120 985 169 97 5 chr9 70141640 70141836 -53934336 - B3 SINE B2 -2 214 1 4 1120 354 316 79 22 chr9 70141933 70142111 -53934061 - MER53 DNA hAT 0 193 6 4 1120 774 268 46 10 chr9 70142188 70142384 -53933788 - ID_B1 SINE B4 -20 204 2 4 1120 350 247 53 11 chr9 70142395 70142489 -53933683 + MIR SINE MIR 15 112 -150 4 1120 252 0 0 0 chr9 70142757 70142785 -53933387 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1120 234 0 0 0 chr9 70142785 70142810 -53933362 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1120 512 68 14 0 chr9 70143204 70143277 -53932895 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 4 1120 303 335 29 23 chr9 70143575 70143749 -53932423 - RLTR42-int LTR ERVK -4122 1400 1226 4 1120 284 283 25 50 chr9 70143999 70144118 -53932054 + PB1 SINE Alu 5 120 -7 4 1120 192 303 134 70 chr9 70144167 70144309 -53931863 + L2a LINE L2 3271 3421 -5 4 1120 901 113 35 7 chr9 70144522 70144664 -53931508 - B1_Mur4 SINE Alu -2 148 3 4 1120 842 262 53 37 chr9 70145511 70145757 -53930415 + B4 SINE B4 43 292 0 4 1120 396 0 0 0 chr9 70146412 70146456 -53929716 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1120 869 174 0 7 chr9 70146561 70146700 -53929472 + B1_Mur4 SINE Alu 1 138 -12 4 1120 249 200 0 0 chr9 70146822 70146867 -53929305 - MIRc SINE MIR -111 157 113 4 1120 2599 151 22 5 chr9 70147214 70147628 -53928544 - MTC LTR MaLR 0 421 1 4 1120 635 239 21 48 chr9 70148302 70148447 -53927725 - RSINE1 SINE B4 -24 141 1 4 1120 263 333 0 27 chr9 70148451 70148525 -53927647 - ID_B1 SINE B4 -12 212 141 4 1120 1076 161 33 42 chr9 70148638 70148852 -53927320 - B3 SINE B2 -4 212 1 4 1120 517 285 130 0 chr9 70149749 70149956 -53926216 + Lx8 LINE L1 7154 7387 -86 4 1120 261 325 89 30 chr9 70150272 70150475 -53925697 - L1MC5 LINE L1 -395 7566 7352 4 1120 1235 188 99 142 chr9 70150480 70150853 -53925319 - MTEa LTR MaLR -5 374 18 4 1120 553 285 114 44 chr9 70151094 70151545 -53924627 - L1MC5 LINE L1 -873 7088 6701 4 1120 25 0 0 0 chr9 70151631 70151656 -53924516 + AT_rich Low_complexity Low_complexity 1 25 0 4 1120 1194 200 5 0 chr9 70151998 70152213 -53923959 - B3 SINE B2 0 216 1 4 1120 406 250 34 8 chr9 70152351 70152468 -53923704 - PB1D7 SINE Alu 0 120 1 4 1120 272 366 83 91 chr9 70153608 70154113 -53922059 - MER77 LTR ERVL -50 557 57 4 1120 180 266 14 86 chr9 70154159 70154229 -53921943 + MIR SINE MIR 85 149 -59 4 1120 925 234 42 19 chr9 70155377 70155590 -53920582 - ID_B1 SINE B4 -1 223 6 4 1120 370 287 62 62 chr9 70155617 70155777 -53920395 - RSINE1 SINE B4 -2 163 4 4 1120 641 252 21 0 chr9 70155803 70155946 -53920226 + B1_Mur1 SINE Alu 4 149 0 4 1120 258 305 25 0 chr9 70156238 70156356 -53919816 - CR1_Mam LINE CR1 -1536 668 548 4 1120 827 208 147 30 chr9 70156601 70156799 -53919373 - B4 SINE B4 -3 289 69 4 1120 310 339 60 12 chr9 70156860 70157027 -53919145 - MIRb SINE MIR -76 192 18 4 1120 939 221 48 10 chr9 70157194 70157400 -53918772 + B3 SINE B2 1 214 -2 4 1120 494 291 52 13 chr9 70158204 70158357 -53917815 + B4A SINE B4 1 159 -133 4 1120 255 31 0 0 chr9 70158357 70158389 -53917783 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1120 255 61 0 0 chr9 70158389 70158422 -53917750 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1120 1707 31 0 0 chr9 70158524 70158716 -53917456 - B2_Mm1t SINE B2 0 193 2 4 1120 944 193 22 0 chr9 70158795 70158976 -53917196 + B3A SINE B2 14 198 0 4 1120 1224 95 26 31 chr9 70159718 70159913 -53916259 - B2_Mm2 SINE B2 0 195 2 4 1120 390 198 191 38 chr9 70159973 70160065 -53916107 - RSINE1 SINE B4 -4 161 48 4 1120 2666 143 22 2 chr9 70160065 70160478 -53915694 + MTC LTR MaLR 1 421 0 4 1120 390 198 191 38 chr9 70160478 70160516 -53915656 - RSINE1 SINE B4 -118 47 11 4 1120 351 257 45 27 chr9 70160538 70160650 -53915522 - PB1D10 SINE Alu -1 116 3 4 1120 297 286 11 77 chr9 70161211 70161302 -53914870 + RSINE1 SINE B4 61 145 -20 4 1120 333 0 0 0 chr9 70161512 70161549 -53914623 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1120 21 0 0 0 chr9 70161633 70161654 -53914518 + AT_rich Low_complexity Low_complexity 1 21 0 4 1120 584 286 9 67 chr9 70161693 70161903 -53914269 + B4A SINE B4 88 285 -7 4 1120 334 289 115 17 chr9 70161938 70162109 -53914063 + B3A SINE B2 1 194 -1 4 1120 371 119 47 12 chr9 70162111 70162196 -53913976 + GA-rich Low_complexity Low_complexity 6 93 0 4 1120 355 250 13 0 chr9 70162222 70162298 -53913874 + ID4 SINE ID 5 81 -2 4 1120 1684 196 136 0 chr9 70162361 70162729 -53913443 + MTD LTR MaLR 1 418 -1 4 1120 225 163 0 0 chr9 70163578 70163627 -53912545 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1120 265 286 13 0 chr9 70163735 70163812 -53912360 - ID4_ SINE ID -5 78 1 4 1120 213 286 135 117 chr9 70163791 70163829 -53912343 + B4 SINE B4 55 94 -198 4 1120 387 264 81 45 chr9 70163829 70163940 -53912232 + PB1D10 SINE Alu 2 116 -1 4 1120 231 302 69 8 chr9 70164638 70164768 -53911404 + L1M LINE L1 5254 5391 -733 4 1120 786 259 27 41 chr9 70164799 70165020 -53911152 + ID_B1 SINE B4 1 218 -6 4 1120 230 176 0 19 chr9 70165043 70165095 -53911077 + (TTA)n Simple_repeat Simple_repeat 3 53 0 4 1120 742 171 6 22 chr9 70165233 70165413 -53910759 + CT-rich Low_complexity Low_complexity 2 178 0 4 1120 575 281 69 58 chr9 70165457 70165631 -53910541 - ID_B1 SINE B4 -48 176 1 4 1120 259 298 47 109 chr9 70165751 70165879 -53910293 + PB1D7 SINE Alu 1 120 0 4 1120 330 248 42 58 chr9 70166862 70166982 -53909190 + MER5A1 DNA MER1_type 47 164 -2 4 1120 1005 234 5 46 chr9 70167343 70167562 -53908610 + ID_B1 SINE B4 13 222 -2 4 1120 683 265 0 0 chr9 70167563 70167710 -53908462 + B1_Mur1 SINE Alu 1 147 -2 4 1120 890 128 49 14 chr9 70168708 70168851 -53907321 + B1_Mur4 SINE Alu 3 150 0 4 1120 356 230 57 11 chr9 70168898 70168986 -53907186 - ID_B1 SINE B4 -2 222 131 4 1120 285 268 230 9 chr9 70168986 70169011 -53907161 - B1F1 SINE Alu -2 147 10 4 1120 516 32 0 0 chr9 70169577 70169639 -53906533 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 1120 321 26 0 0 chr9 70169639 70169676 -53906496 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1120 370 250 125 0 chr9 70170377 70170489 -53905683 + RSINE1 SINE B4 2 127 -38 4 1120 1186 180 19 5 chr9 70170993 70171205 -53904967 - B3 SINE B2 0 216 2 4 1120 426 198 199 10 chr9 70171366 70171488 -53904684 - PB1 SINE Alu -8 141 2 4 1120 843 181 112 11 chr9 70171781 70171960 -53904212 - ORR1D2 LTR MaLR 0 370 174 4 1120 333 0 0 0 chr9 70172197 70172234 -53903938 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 4 1120 669 210 28 82 chr9 70172245 70172427 -53903745 + B3 SINE B2 41 212 -4 4 1120 243 0 0 0 chr9 70172939 70172966 -53903206 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1120 617 241 99 29 chr9 70173179 70173350 -53902822 + B3A SINE B2 1 183 -15 4 1120 345 107 0 5 chr9 70173420 70173472 -53902700 + B1_Mur2 SINE Alu 78 143 -6 4 1120 718 242 18 195 chr9 70174364 70174698 -53901474 + B4A SINE B4 3 277 -15 4 1120 315 177 0 0 chr9 70174726 70174788 -53901384 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1120 317 24 24 0 chr9 70175272 70175314 -53900858 + (TCCCC)n Simple_repeat Simple_repeat 5 47 0 4 1120 346 271 10 20 chr9 70175326 70175424 -53900748 + CT-rich Low_complexity Low_complexity 1 97 0 4 1120 542 250 101 8 chr9 70175586 70175715 -53900457 - RSINE1 SINE B4 -12 153 13 4 1120 529 219 105 8 chr9 70177226 70177350 -53898822 + ID_B1 SINE B4 5 140 -84 4 1120 4124 55 77 39 chr9 70177690 70178278 -53897894 - L1_Mus2 LINE L1 0 6566 5957 4 1120 245 45 23 0 chr9 70178278 70178322 -53897850 + L1VL1 LINE L1 1020 1064 -5358 4 1120 432 223 32 0 chr9 70178474 70178568 -53897604 - ID_B1 SINE B4 -24 200 104 4 1120 334 197 65 13 chr9 70179347 70179424 -53896748 - ID SINE ID -142 82 2 4 1120 293 367 28 0 chr9 70180253 70180362 -53895810 - PB1D10 SINE Alu -5 112 1 4 1120 1435 187 29 7 chr9 70180396 70180671 -53895501 - B4 SINE B4 -10 282 2 4 1120 207 105 26 0 chr9 70181136 70181174 -53894998 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 4 1120 439 262 0 53 chr9 70181175 70181288 -53894884 - PB1D10 SINE Alu -2 115 9 4 1120 201 39 0 0 chr9 70181330 70181356 -53894816 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1120 1126 267 38 28 chr9 70181680 70181969 -53894203 + B4A SINE B4 1 292 0 4 1120 336 196 52 29 chr9 70182695 70182791 -53893381 - B1_Mur2 SINE Alu -46 103 11 4 1120 495 0 0 0 chr9 70183256 70183311 -53892861 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1120 569 307 93 76 chr9 70183670 70183796 -53892376 - MLT1F1 LTR MaLR -267 302 169 4 1120 1313 87 27 0 chr9 70183796 70183979 -53892193 - B2_Mm2 SINE B2 -6 189 2 4 1120 569 307 93 76 chr9 70183979 70184141 -53892031 - MLT1F1 LTR MaLR -401 168 9 4 1120 961 240 26 44 chr9 70184144 70184391 -53891781 - ID_B1 SINE B4 -42 250 7 4 1120 659 117 19 10 chr9 70184483 70184587 -53891585 - B1_Mm SINE Alu -1 146 42 5 1120 303 161 0 0 chr9 70184607 70184663 -53891509 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1120 889 161 21 0 chr9 70185028 70185171 -53891001 - B1_Mus1 SINE Alu 0 148 3 5 1120 1248 63 115 0 chr9 70185320 70185494 -53890678 + B2_Mm2 SINE B2 1 194 -1 5 1120 616 239 77 6 chr9 70185621 70185777 -53890395 + B4A SINE B4 1 167 -125 5 1120 198 0 0 0 chr9 70185894 70185916 -53890256 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1120 874 226 5 53 chr9 70185974 70186180 -53889992 + B3A SINE B2 2 197 -1 5 1120 963 259 0 5 chr9 70187696 70187894 -53888278 - B3 SINE B2 -3 213 17 5 1120 1680 180 103 6 chr9 70188176 70188506 -53887666 - ORR1D1 LTR MaLR -12 362 1 5 1120 1827 131 136 33 chr9 70188515 70188847 -53887325 - ORR1B1 LTR MaLR -8 386 21 5 1120 522 196 0 0 chr9 70188836 70188928 -53887244 + ID_B1 SINE B4 133 224 0 5 1120 255 125 0 0 chr9 70189508 70189548 -53886624 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1120 1099 148 55 0 chr9 70190986 70191169 -53885003 - B3 SINE B2 -14 202 10 5 1120 247 115 38 19 chr9 70192494 70192547 -53883625 + GA-rich Low_complexity Low_complexity 4 57 0 5 1120 429 208 13 0 chr9 70192641 70192718 -53883454 - ID SINE ID -144 80 3 5 1120 699 272 9 52 chr9 70193851 70194064 -53882108 + ID_B1 SINE B4 2 205 -19 5 1120 249 108 0 0 chr9 70194713 70194750 -53881422 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1120 810 258 26 44 chr9 70195208 70195435 -53880737 + ID_B1 SINE B4 2 224 0 5 1120 869 241 35 0 chr9 70195605 70195804 -53880368 + B3 SINE B2 1 206 -10 5 1120 381 271 33 0 chr9 70196584 70196694 -53879478 + PB1D10 SINE Alu 3 119 -1 5 1120 269 326 133 0 chr9 70196693 70196791 -53879381 - PB1 SINE Alu -12 115 5 5 1120 859 155 62 57 chr9 70196871 70197063 -53879109 + B2_Mm2 SINE B2 1 193 -2 5 1120 201 182 0 0 chr9 70197071 70197104 -53879068 + A-rich Low_complexity Low_complexity 1 33 0 5 1120 630 159 144 7 chr9 70197889 70198028 -53878144 + B3 SINE B2 59 216 0 5 1120 25 51 0 0 chr9 70198030 70198069 -53878103 + AT_rich Low_complexity Low_complexity 1 39 0 5 1120 461 218 8 127 chr9 70199104 70199230 -53876942 + B1_Mur2 SINE Alu 34 144 -5 5 1120 913 194 73 24 chr9 70199242 70199448 -53876724 + B3 SINE B2 1 216 0 5 1120 567 229 191 12 chr9 70200268 70200436 -53875736 - B3A SINE B2 0 198 1 5 1120 267 79 0 0 chr9 70200518 70200556 -53875616 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 1120 590 256 0 0 chr9 70200564 70200689 -53875483 + ID_B1 SINE B4 80 204 -20 5 1120 1011 220 19 0 chr9 70201753 70201962 -53874210 + B3 SINE B2 1 213 -3 5 1120 22 0 0 0 chr9 70201965 70201987 -53874185 + AT_rich Low_complexity Low_complexity 1 22 0 5 1120 188 281 59 35 chr9 70202131 70202216 -53873956 - MIRb SINE MIR -91 177 91 5 1120 361 204 61 51 chr9 70202357 70202455 -53873717 + ID_B1 SINE B4 2 100 -124 5 1120 706 204 6 70 chr9 70202487 70202645 -53873527 - B1_Mur1 SINE Alu 0 149 2 5 1120 400 247 0 0 chr9 70202653 70202738 -53873434 - B4 SINE B4 -206 86 2 5 1120 844 173 25 114 chr9 70203140 70203342 -53872830 + B3A SINE B2 11 194 -4 5 1120 1219 208 28 12 chr9 70203513 70203766 -53872406 + B4 SINE B4 2 258 -34 5 1120 275 217 17 0 chr9 70203798 70203858 -53872314 + C-rich Low_complexity Low_complexity 2 62 0 5 1120 183 129 0 0 chr9 70203947 70203978 -53872194 + (TCC)n Simple_repeat Simple_repeat 2 32 0 5 1120 260 262 167 0 chr9 70204775 70204859 -53871313 + B3A SINE B2 1 98 -100 5 1120 327 319 11 21 chr9 70204879 70204972 -53871200 + B4A SINE B4 183 274 -18 5 1120 249 314 43 0 chr9 70205034 70205104 -53871068 - RSINE1 SINE B4 -82 83 11 5 1120 398 236 281 35 chr9 70205324 70205495 -53870677 + B3 SINE B2 4 216 0 5 1120 519 292 19 29 chr9 70205680 70205888 -53870284 + B4 SINE B4 1 206 -86 5 1120 396 0 0 0 chr9 70205901 70205945 -53870227 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1120 597 281 40 14 chr9 70206540 70206688 -53869484 - RSINE1 SINE B4 -13 152 1 5 1120 221 274 0 0 chr9 70206689 70206740 -53869432 - PB1D10 SINE Alu -2 115 65 5 1120 2022 271 112 5 chr9 70207242 70207989 -53868183 - L1MB8 LINE L1 -42 6136 5310 5 1120 540 258 0 77 chr9 70208218 70208361 -53867811 - B1_Mur3 SINE Alu -17 132 1 5 1120 466 222 0 0 chr9 70208561 70208642 -53867530 + ID_B1 SINE B4 15 95 -129 5 1120 659 281 20 35 chr9 70208643 70208846 -53867326 + B3 SINE B2 2 201 -15 5 1120 248 263 66 0 chr9 70208940 70209016 -53867156 + ID4 SINE ID 3 83 0 5 1120 949 128 42 68 chr9 70209045 70209237 -53866935 + B2_Mm2 SINE B2 1 187 -8 5 1120 240 190 136 29 chr9 70209273 70209346 -53866826 + B2_Mm1t SINE B2 6 83 -115 5 1120 501 289 60 0 chr9 70209438 70209587 -53866585 - B4 SINE B4 -64 228 71 5 1120 338 107 18 0 chr9 70209788 70209844 -53866328 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 5 1120 1145 307 40 45 chr9 70210488 70210867 -53865305 - MTE2b LTR MaLR 0 379 3 5 1120 1251 227 56 121 chr9 70211314 70211710 -53864462 - MTE2a LTR MaLR -3 376 7 5 1120 889 233 69 0 chr9 70211789 70211978 -53864194 + ID_B1 SINE B4 8 209 -15 5 1120 1398 66 39 0 chr9 70212003 70212184 -53863988 - B2_Mm2 SINE B2 -6 189 2 5 1120 306 231 7 129 chr9 70212269 70212298 -53863874 + MT2B LTR ERVL 143 154 -447 5 1120 630 167 50 0 chr9 70212298 70212418 -53863754 + B1_Mus1 SINE Alu 2 127 -21 5 1120 668 98 0 10 chr9 70212443 70212546 -53863626 + (GAGAA)n Simple_repeat Simple_repeat 5 106 0 5 1120 726 175 105 0 chr9 70213193 70213364 -53862808 + B3A SINE B2 4 192 -6 5 1120 524 303 51 36 chr9 70214090 70214285 -53861887 - B3A SINE B2 0 198 1 5 1120 691 241 84 30 chr9 70215209 70215376 -53860796 + B3 SINE B2 3 178 -38 5 1120 348 64 0 0 chr9 70215588 70215635 -53860537 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1120 310 322 186 0 chr9 70215636 70215754 -53860418 - RSINE1 SINE B4 -24 141 2 5 1120 370 318 128 13 chr9 70215782 70215798 -53860374 + B4 SINE B4 70 210 -82 5 1120 522 183 26 68 chr9 70215798 70215903 -53860269 + PB1D9 SINE Alu 3 106 -14 5 1120 3318 48 5 2 chr9 70215903 70216298 -53859874 - MTB LTR MaLR -4 396 1 5 1120 522 183 26 68 chr9 70216298 70216309 -53859863 + PB1D9 SINE Alu 107 114 -6 5 1120 370 318 128 13 chr9 70216309 70216332 -53859840 + B4 SINE B4 211 243 -49 5 1120 929 242 23 0 chr9 70217001 70217216 -53858956 - ID_B1 SINE B4 -2 222 3 5 1120 2108 122 142 3 chr9 70217439 70217785 -53858387 - ORR1B1 LTR MaLR 0 394 1 5 1120 787 245 54 24 chr9 70218437 70218642 -53857530 + ID_B1 SINE B4 1 211 -13 5 1120 269 293 0 17 chr9 70218696 70218755 -53857417 + RSINE1 SINE B4 3 60 -105 5 1120 246 125 0 0 chr9 70218766 70218814 -53857358 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1120 342 115 0 0 chr9 70218814 70218866 -53857306 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1120 579 286 0 0 chr9 70218868 70219008 -53857164 - B1F2 SINE Alu -5 144 5 5 1120 21 0 0 0 chr9 70219009 70219030 -53857142 + AT_rich Low_complexity Low_complexity 1 21 0 5 1120 252 247 43 55 chr9 70220608 70220771 -53855401 + L1MC5 LINE L1 7609 7769 -192 5 1120 369 212 15 0 chr9 70220875 70220941 -53855231 - RSINE1 SINE B4 -68 97 31 5 1120 242 230 147 13 chr9 70220928 70221003 -53855169 + ID_B1 SINE B4 131 215 -9 5 1120 708 272 144 4 chr9 70221015 70221251 -53854921 + B4A SINE B4 1 269 -23 5 1120 657 217 0 0 chr9 70221264 70221444 -53854728 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1120 379 245 6 6 chr9 70221488 70221652 -53854520 + (TG)n Simple_repeat Simple_repeat 1 164 0 5 1120 1047 158 102 56 chr9 70221940 70222155 -53854017 - URR1B DNA MER1_type 0 225 1 5 1120 183 205 0 0 chr9 70222774 70222813 -53853359 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1120 23 33 0 0 chr9 70223258 70223288 -53852884 + AT_rich Low_complexity Low_complexity 1 30 0 5 1120 833 237 86 0 chr9 70223291 70223489 -53852683 - B3 SINE B2 0 216 2 5 1120 252 0 0 0 chr9 70223602 70223630 -53852542 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1120 305 216 313 111 chr9 70223645 70223744 -53852428 - B3A SINE B2 -97 119 1 5 1120 514 285 7 19 chr9 70223859 70224013 -53852159 - RSINE1 SINE B4 -13 152 1 5 1120 816 248 45 90 chr9 70225104 70225484 -53850688 - MTE2a LTR MaLR -61 358 1 5 1120 413 197 0 0 chr9 70226443 70226514 -53849658 + RSINE1 SINE B4 2 72 -93 5 1120 953 283 48 9 chr9 70226713 70226941 -53849231 + B4 SINE B4 56 292 0 5 1120 329 105 316 9 chr9 70227093 70227207 -53848965 - B2_Mm2 SINE B2 0 195 47 5 1120 1122 75 119 0 chr9 70227253 70227413 -53848759 - B2_Mm1t SINE B2 -14 179 1 5 1120 750 207 0 0 chr9 70227724 70227874 -53848298 + B1_Mur4 SINE Alu 1 150 0 5 1120 588 114 43 9 chr9 70227874 70227989 -53848183 + A-rich Low_complexity Low_complexity 2 120 0 5 1120 282 203 34 0 chr9 70227993 70228052 -53848120 + GA-rich Low_complexity Low_complexity 4 64 0 6 1120 838 160 0 20 chr9 70228741 70228888 -53847284 - B1_Mur2 SINE Alu -1 148 5 6 1120 1239 72 0 0 chr9 70228902 70229082 -53847090 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1120 610 219 81 0 chr9 70229091 70229214 -53846958 + B1_Mur2 SINE Alu 5 137 -12 6 1120 1409 132 28 0 chr9 70229214 70229426 -53846746 - RLTR17 LTR ERVK -273 419 202 6 1120 593 251 72 52 chr9 70229425 70229618 -53846554 - B4 SINE B4 -62 230 34 6 1120 505 183 47 40 chr9 70229651 70229799 -53846373 - Charlie10 DNA MER1_type -46 2776 2628 6 1120 3010 126 61 8 chr9 70230668 70231163 -53845009 + RLTR28 LTR ERVL 4 524 0 6 1120 217 244 0 0 chr9 70231481 70231526 -53844646 - MIRm SINE MIR -131 145 101 6 1120 804 21 0 0 chr9 70232071 70232165 -53844007 + (TTCTC)n Simple_repeat Simple_repeat 4 97 0 6 1120 899 63 167 0 chr9 70232166 70232292 -53843880 - B1_Mus1 SINE Alu -1 147 1 6 1120 386 188 24 24 chr9 70232394 70232476 -53843696 + B3 SINE B2 1 82 -134 6 1120 1821 187 60 18 chr9 70232490 70232876 -53843296 - RMER15 LTR ERVL 0 575 174 6 1120 211 214 0 0 chr9 70232876 70232918 -53843254 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1120 1495 242 64 15 chr9 70233363 70233757 -53842415 - MTD LTR MaLR -14 405 1 6 1120 187 323 137 43 chr9 70233764 70233903 -53842269 + MIRb SINE MIR 110 261 -7 6 1120 308 188 14 0 chr9 70233909 70233978 -53842194 + (ATG)n Simple_repeat Simple_repeat 1 70 0 6 1120 21 0 0 0 chr9 70234018 70234039 -53842133 + AT_rich Low_complexity Low_complexity 1 21 0 6 1120 380 268 138 80 chr9 70234081 70234219 -53841953 - RSINE1 SINE B4 -19 146 1 6 1120 217 289 0 0 chr9 70234802 70234847 -53841325 - MER5A DNA MER1_type -3 186 142 6 1120 267 103 0 0 chr9 70234889 70234928 -53841244 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1120 811 290 13 36 chr9 70234930 70235155 -53841017 - B4A SINE B4 -27 265 46 6 1120 279 0 0 0 chr9 70235709 70235740 -53840432 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1120 498 210 192 8 chr9 70235747 70235872 -53840300 + B1F SINE Alu 1 148 -1 6 1120 478 202 34 0 chr9 70235898 70235987 -53840185 + B3A SINE B2 1 92 -103 6 1120 1285 133 0 0 chr9 70236001 70236189 -53839983 - B2_Mm2 SINE B2 -6 189 2 6 1120 397 263 8 34 chr9 70236618 70236736 -53839436 - BC1_Mm scRNA scRNA -37 115 1 6 1120 643 192 83 0 chr9 70236899 70237019 -53839153 + B1_Mur2 SINE Alu 3 132 -17 6 1120 1363 87 38 0 chr9 70237113 70237297 -53838875 - B2_Mm2 SINE B2 -3 192 2 6 1120 201 224 69 0 chr9 70237927 70237985 -53838187 + MIR SINE MIR 99 164 -104 6 1120 466 327 25 44 chr9 70237994 70238154 -53838018 + RSINE1 SINE B4 3 159 -6 6 1120 198 0 0 0 chr9 70238185 70238207 -53837965 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 6 1120 251 245 172 10 chr9 70238571 70238670 -53837502 + B2_Mm2 SINE B2 10 124 -71 6 1120 288 0 0 0 chr9 70238688 70238720 -53837452 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1120 539 270 13 26 chr9 70238800 70238956 -53837216 + RSINE1 SINE B4 12 165 0 6 1120 360 0 0 0 chr9 70239203 70239243 -53836929 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1120 456 203 0 89 chr9 70239365 70239499 -53836673 - B1F1 SINE Alu 0 117 1 6 1120 936 217 79 20 chr9 70239519 70239721 -53836451 - B3 SINE B2 0 216 3 6 1120 635 226 111 46 chr9 70239840 70240108 -53836064 + MTD LTR MaLR 6 310 -97 6 1120 303 274 83 19 chr9 70240313 70240421 -53835751 - MER63D DNA AcHobo -933 128 14 6 1120 277 216 156 17 chr9 70240907 70241025 -53835147 - L1MB8 LINE L1 -9 6169 6036 6 1120 464 159 178 0 chr9 70241041 70241149 -53835023 + B1_Mus2 SINE Alu 17 149 -1 6 1120 637 54 32 0 chr9 70241149 70241242 -53834930 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 6 1120 308 187 112 62 chr9 70241305 70241385 -53834787 - L1M4 LINE L1 -1706 4440 4357 6 1120 649 287 0 43 chr9 70241408 70241572 -53834600 - RSINE1 SINE B4 -7 158 2 6 1120 278 309 38 63 chr9 70241635 70241794 -53834378 + YREP_Mm Unknown Unknown 153 307 -1505 6 1120 993 222 26 70 chr9 70241664 70241892 -53834280 - ID_B1 SINE B4 -6 218 1 6 1120 218 264 79 121 chr9 70242626 70242816 -53833356 - B2_Mm2 SINE B2 -3 192 11 6 1120 797 237 19 6 chr9 70242664 70242821 -53833351 - RSINE1 SINE B4 0 165 7 6 1120 351 0 0 0 chr9 70242937 70242976 -53833196 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1120 1121 65 0 0 chr9 70242976 70243114 -53833058 - B1_Mus1 SINE Alu -10 138 1 6 1120 507 259 165 31 chr9 70243184 70243378 -53832794 + ID_B1 SINE B4 2 221 -3 6 1120 2478 133 19 0 chr9 70243866 70244243 -53831929 - ORR1B1 LTR MaLR -8 386 3 6 1120 1096 136 91 16 chr9 70244246 70244433 -53831739 + URR1A DNA MER1_type 26 226 0 6 1120 228 300 17 0 chr9 70244473 70244533 -53831639 - ID2 SINE ID -8 75 15 6 1120 352 296 30 20 chr9 70244566 70244666 -53831506 - B1F SINE Alu -18 131 31 6 1120 576 239 128 66 chr9 70245249 70245460 -53830712 + ID_B1 SINE B4 1 224 0 6 1120 214 103 77 0 chr9 70245789 70245828 -53830344 + T-rich Low_complexity Low_complexity 1 42 0 6 1120 180 0 0 0 chr9 70245844 70245864 -53830308 + (TTCTC)n Simple_repeat Simple_repeat 1 20 0 6 1120 1068 79 0 33 chr9 70245865 70246049 -53830123 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 6 1120 860 110 16 8 chr9 70246057 70246185 -53829987 - B1_Mur4 SINE Alu -21 129 1 6 1120 1040 227 21 0 chr9 70246188 70246382 -53829790 - ID_B1 SINE B4 0 224 27 6 1120 1246 48 0 0 chr9 70247738 70247884 -53828288 + B1_Mus2 SINE Alu 2 147 0 6 1120 416 109 0 0 chr9 70247912 70247967 -53828205 + B1_Mus1 SINE Alu 13 67 -81 6 1120 1145 83 124 0 chr9 70247970 70248139 -53828033 + B2_Mm1t SINE B2 1 190 -3 6 1120 922 209 102 0 chr9 70248201 70248378 -53827794 + B3 SINE B2 1 195 -21 6 1120 509 256 98 43 chr9 70248426 70248618 -53827554 + ID_B1 SINE B4 74 264 -28 6 1120 1528 43 27 0 chr9 70248945 70249132 -53827040 - B2_Mm2 SINE B2 -3 192 1 6 1120 1297 183 146 71 chr9 70249172 70249543 -53826629 + MT2A LTR ERVL 17 541 -60 6 1120 195 129 0 0 chr9 70249543 70249574 -53826598 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1120 951 179 172 81 chr9 70249574 70249611 -53826561 + MT2A LTR ERVL 542 601 0 6 1120 288 0 0 0 chr9 70250015 70250047 -53826125 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1120 1758 171 55 74 chr9 70250251 70250617 -53825555 - ORR1B2 LTR MaLR -8 359 1 6 1120 941 241 26 0 chr9 70250766 70250957 -53825215 + B3 SINE B2 16 211 -5 6 1120 274 191 31 31 chr9 70251055 70251120 -53825052 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 6 1120 637 156 81 16 chr9 70253616 70253740 -53822432 - B1_Mus1 SINE Alu -16 132 1 6 1120 343 246 8 85 chr9 70253628 70253757 -53822415 - MT2B LTR ERVL -336 265 147 6 1121 1054 75 30 0 chr9 70256066 70256200 -53819972 - B1_Mus1 SINE Alu -10 138 1 6 1121 816 195 130 17 chr9 70256302 70256479 -53819693 + B3 SINE B2 1 197 -19 6 1121 252 284 27 13 chr9 70257384 70257459 -53818713 + ID4_ SINE ID 4 79 -4 6 1121 278 239 56 14 chr9 70257828 70257900 -53818272 + B4 SINE B4 2 76 -216 6 1121 1128 200 27 0 chr9 70258183 70258403 -53817769 - URR1A DNA MER1_type 0 226 1 6 1121 254 264 96 14 chr9 70259324 70259397 -53816775 + RSINE1 SINE B4 11 89 -76 6 1121 370 276 56 7 chr9 70261613 70261755 -53814417 + B1F SINE Alu 1 149 0 6 1121 382 179 20 13 chr9 70261878 70261977 -53814195 + B1F SINE Alu 44 141 -8 6 1121 1512 57 0 25 chr9 70262591 70262790 -53813382 + B2_Mm2 SINE B2 2 195 0 6 1121 486 157 128 0 chr9 70262876 70262978 -53813194 + B1_Mur3 SINE Alu 34 148 -1 6 1121 219 69 0 0 chr9 70263578 70263607 -53812565 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 1121 309 26 0 0 chr9 70263607 70263645 -53812527 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1121 300 231 90 0 chr9 70263651 70263729 -53812443 - PB1D10 SINE Alu -5 112 28 6 1121 228 276 333 0 chr9 70263729 70263769 -53812403 - ID_B1 SINE B4 0 219 61 6 1121 501 228 75 75 chr9 70264346 70264479 -53811693 - B3A SINE B2 -30 168 36 6 1121 1283 69 40 0 chr9 70264480 70264653 -53811519 + B2_Mm2 SINE B2 2 181 -14 6 1121 1058 50 0 21 chr9 70264679 70264821 -53811351 + B1_Mus2 SINE Alu 9 147 0 6 1121 348 164 0 0 chr9 70264837 70264904 -53811268 + GA-rich Low_complexity Low_complexity 3 69 0 6 1121 222 121 0 0 chr9 70264915 70264948 -53811224 - B3A SINE B2 -165 33 1 6 1121 317 200 0 0 chr9 70265119 70265179 -53810993 - tRNA-Ala-GCY_ tRNA tRNA -9 66 7 6 1121 882 224 106 0 chr9 70265257 70265436 -53810736 - ID_B1 SINE B4 -24 200 3 6 1121 959 98 60 0 chr9 70265451 70265584 -53810588 - B1_Mus1 SINE Alu -6 142 2 6 1121 24 53 0 0 chr9 70265613 70265651 -53810521 + AT_rich Low_complexity Low_complexity 1 38 0 6 1121 464 244 0 34 chr9 70265854 70265943 -53810229 + B1F1 SINE Alu 2 87 -62 6 1121 474 222 119 8 chr9 70265971 70266089 -53810083 + RSINE1 SINE B4 6 136 -29 7 1121 270 81 0 0 chr9 70266091 70266128 -53810044 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 7 1121 1004 225 14 23 chr9 70266344 70266558 -53809614 + B3 SINE B2 1 212 -4 7 1121 231 88 0 0 chr9 70266970 70267004 -53809168 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 7 1121 623 206 77 83 chr9 70267123 70267292 -53808880 + B3 SINE B2 2 169 -47 7 1121 503 142 23 13 chr9 70267326 70267449 -53808723 - B1_Mus2 SINE Alu -1 149 27 7 1121 22 0 0 0 chr9 70267460 70267482 -53808690 + AT_rich Low_complexity Low_complexity 1 22 0 7 1121 1238 41 0 7 chr9 70268737 70268885 -53807287 - B1_Mus1 SINE Alu 0 148 2 7 1121 21 0 0 0 chr9 70269540 70269561 -53806611 + AT_rich Low_complexity Low_complexity 1 21 0 7 1121 203 0 0 36 chr9 70270002 70270030 -53806142 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 7 1121 296 184 0 58 chr9 70270486 70270538 -53805634 + PB1 SINE Alu 13 61 -66 7 1121 676 56 0 22 chr9 70270537 70270628 -53805544 - B1_Mus2 SINE Alu 0 147 59 7 1121 599 222 100 55 chr9 70270757 70270819 -53805353 - ID_B1 SINE B4 -15 209 157 7 1121 1109 73 74 58 chr9 70270819 70271008 -53805164 - B2_Mm2 SINE B2 -2 193 2 7 1121 599 222 100 55 chr9 70271008 70271145 -53805027 - ID_B1 SINE B4 -68 156 1 7 1121 251 326 105 50 chr9 70271352 70271533 -53804639 + MLT1G1 LTR MaLR 373 563 -16 7 1121 421 250 36 66 chr9 70272322 70272337 -53803835 + ID_B1 SINE B4 92 224 0 7 1121 606 185 33 25 chr9 70272337 70272459 -53803713 + B1_Mur1 SINE Alu 27 149 0 7 1121 250 248 89 35 chr9 70272640 70272745 -53803427 - B3A SINE B2 -38 160 47 7 1121 280 0 24 24 chr9 70274390 70274431 -53801741 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1121 527 285 89 74 chr9 70275046 70275315 -53800857 + B4 SINE B4 2 274 -18 7 1121 255 327 0 0 chr9 70275293 70275348 -53800824 + RSINE1 SINE B4 108 162 -3 7 1121 405 0 0 0 chr9 70276060 70276105 -53800067 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1121 585 253 200 12 chr9 70276105 70276265 -53799907 + B3 SINE B2 1 190 -26 7 1121 441 54 0 0 chr9 70276294 70276350 -53799822 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1121 1142 56 35 0 chr9 70276384 70276527 -53799645 - B1_Mus1 SINE Alu 0 148 1 7 1121 343 180 264 22 chr9 70276810 70276901 -53799271 + PB1D9 SINE Alu 2 114 -6 7 1121 246 261 44 44 chr9 70277236 70277304 -53798868 - ID2 SINE ID -4 79 12 7 1121 325 308 43 21 chr9 70278132 70278225 -53797947 - PB1D7 SINE Alu -20 100 6 7 1121 403 216 62 0 chr9 70278304 70278401 -53797771 + PB1D10 SINE Alu 1 103 -14 7 1121 822 256 63 15 chr9 70279224 70279430 -53796742 - B3 SINE B2 0 216 1 7 1121 217 192 96 0 chr9 70279484 70279536 -53796636 - B1_Mus1 SINE Alu -91 57 1 7 1121 508 105 311 9 chr9 70279903 70280009 -53796163 - ORR1A2 LTR MaLR 0 327 190 7 1121 4282 160 75 92 chr9 70279995 70280228 -53795944 - ORR1A2-int LTR MaLR -739 1053 874 7 1121 1033 83 0 8 chr9 70280228 70280362 -53795810 - B1_Mus2 SINE Alu -12 135 3 7 1121 4282 160 75 92 chr9 70280362 70281200 -53794972 - ORR1A2-int LTR MaLR -919 873 1 7 1121 1747 141 70 0 chr9 70281204 70281502 -53794670 - ORR1A2 LTR MaLR -8 319 1 7 1121 1452 63 11 0 chr9 70281623 70281812 -53794360 + B2_Mm1t SINE B2 1 191 -2 7 1121 229 281 10 119 chr9 70281849 70281950 -53794222 + PB1 SINE Alu 27 116 -11 7 1121 204 40 0 0 chr9 70281961 70281986 -53794186 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1121 654 248 7 7 chr9 70281986 70282132 -53794040 + B1_Mus2 SINE Alu 1 146 -1 7 1121 1565 26 0 40 chr9 70282261 70282460 -53793712 + B2_Mm1t SINE B2 2 192 -1 7 1121 306 0 0 0 chr9 70282533 70282567 -53793605 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1121 1267 98 21 16 chr9 70282571 70282758 -53793414 + B2_Mm2 SINE B2 2 189 -6 7 1121 2810 11 52 3 chr9 70282862 70283210 -53792962 - MTA_Mm LTR MaLR 0 396 32 7 1121 958 63 0 0 chr9 70283219 70283345 -53792827 - B1_Mus1 SINE Alu -21 127 2 7 1121 418 202 7 144 chr9 70283345 70283372 -53792800 - MT2B LTR ERVL -449 152 145 7 1121 12306 55 47 14 chr9 70283431 70283805 -53792367 + ORR1A0-int LTR MaLR 18 395 -1397 7 1121 1115 62 7 27 chr9 70283805 70283955 -53792217 - B1_Mm SINE Alu 0 147 1 7 1121 12306 55 47 14 chr9 70283955 70285299 -53790873 + ORR1A0-int LTR MaLR 396 1792 0 7 1121 2849 58 0 0 chr9 70285299 70285645 -53790527 + ORR1A0 LTR MaLR 1 346 0 7 1121 292 307 84 14 chr9 70285645 70285787 -53790385 - MER82 DNA MER2_type -347 306 155 7 1121 811 210 17 2 chr9 70285964 70286152 -53790020 - B3 SINE B2 0 198 2 7 1121 272 250 44 0 chr9 70286699 70286767 -53789405 + ID2 SINE ID 12 82 -1 7 1121 1174 75 0 0 chr9 70286835 70286981 -53789191 - B1_Mus2 SINE Alu 0 147 2 7 1121 28 0 0 0 chr9 70287083 70287111 -53789061 + AT_rich Low_complexity Low_complexity 1 28 0 7 1121 554 211 17 17 chr9 70287647 70287763 -53788409 + B1_Mur2 SINE Alu 32 147 -2 7 1121 1441 49 16 21 chr9 70289568 70289756 -53786416 + B2_Mm2 SINE B2 4 190 -5 7 1121 229 203 31 0 chr9 70289761 70289825 -53786347 + L1MA6 LINE L1 6163 6228 -72 7 1121 421 196 86 86 chr9 70290455 70290572 -53785600 + PB1D9 SINE Alu 1 117 -3 7 1121 213 291 18 18 chr9 70290906 70290962 -53785210 + BC1_Mm scRNA scRNA 16 71 -81 7 1121 292 356 79 0 chr9 70291035 70291136 -53785036 + PB1D10 SINE Alu 1 109 -8 7 1121 288 0 0 0 chr9 70291698 70291730 -53784442 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1121 405 0 0 0 chr9 70291730 70291774 -53784398 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1121 736 218 11 63 chr9 70291976 70292167 -53784005 - B2_Mm2 SINE B2 -9 186 6 7 1121 375 253 22 64 chr9 70292280 70292443 -53783729 - B3 SINE B2 -1 194 42 7 1121 375 336 9 9 chr9 70292507 70292612 -53783560 - PB1D10 SINE Alu -1 116 12 7 1121 21 36 0 0 chr9 70293035 70293063 -53783109 + AT_rich Low_complexity Low_complexity 1 28 0 7 1121 901 145 13 27 chr9 70293122 70293271 -53782901 - B1_Mur3 SINE Alu 0 149 3 7 1121 348 64 0 0 chr9 70293327 70293374 -53782798 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1121 692 315 41 48 chr9 70293376 70293416 -53782756 - B4A SINE B4 -23 269 235 7 1121 2412 159 31 22 chr9 70293416 70293833 -53782339 + MTC LTR MaLR 1 421 0 7 1121 692 315 41 48 chr9 70293833 70294062 -53782110 - B4A SINE B4 -58 234 2 7 1121 441 340 0 0 chr9 70294602 70294702 -53781470 - PB1D10 SINE Alu -17 100 1 7 1121 194 0 39 0 chr9 70294916 70294942 -53781230 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1121 21 0 0 0 chr9 70294956 70294977 -53781195 + AT_rich Low_complexity Low_complexity 1 21 0 7 1121 225 0 0 0 chr9 70294977 70295002 -53781170 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 1121 21 0 0 0 chr9 70295240 70295261 -53780911 + AT_rich Low_complexity Low_complexity 1 21 0 7 1121 1167 48 0 20 chr9 70295298 70295448 -53780724 + B1_Mus1 SINE Alu 2 148 0 7 1121 295 276 92 32 chr9 70295852 70295993 -53780179 - MIR SINE MIR -67 201 44 7 1121 1538 38 5 11 chr9 70296625 70296812 -53779360 + B2_Mm1a SINE B2 1 186 -7 7 1121 188 32 0 88 chr9 70296818 70296852 -53779320 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1121 1202 62 0 0 chr9 70297760 70297904 -53778268 + B1_Mus2 SINE Alu 1 144 -3 7 1121 189 0 0 0 chr9 70298140 70298161 -53778011 + (CTGGGG)n Simple_repeat Simple_repeat 2 22 0 7 1121 682 228 47 60 chr9 70298579 70298765 -53777407 + B3A SINE B2 2 184 -32 7 1121 210 71 0 0 chr9 70298768 70298796 -53777376 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1121 267 255 17 121 chr9 70299005 70299018 -53777154 + ID_B1 SINE B4 78 178 -43 7 1121 479 179 10 50 chr9 70299018 70299118 -53777054 + B1_Mur3 SINE Alu 5 100 -49 7 1121 280 196 165 0 chr9 70299173 70299270 -53776902 + L1MA4A LINE L1 6085 6197 -106 7 1121 363 259 90 49 chr9 70299608 70299730 -53776442 + B4A SINE B4 45 171 -121 7 1121 1050 197 32 14 chr9 70299772 70299993 -53776179 - URR1B DNA MER1_type 0 225 1 7 1121 655 192 33 0 chr9 70300089 70300209 -53775963 - B1_Mur2 SINE Alu 0 149 26 7 1121 288 309 60 0 chr9 70300248 70300332 -53775840 - PB1D9 SINE Alu -6 114 26 7 1121 524 273 33 20 chr9 70300865 70301018 -53775154 - RSINE1 SINE B4 -8 157 3 7 1121 270 0 0 0 chr9 70301861 70301891 -53774281 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1121 1119 78 0 0 chr9 70302779 70302920 -53773252 - B1_Mus1 SINE Alu -6 142 2 7 1121 356 303 34 68 chr9 70302936 70303053 -53773119 + RSINE1 SINE B4 53 165 0 7 1121 25 0 0 0 chr9 70303473 70303498 -53772674 + AT_rich Low_complexity Low_complexity 1 25 0 7 1121 191 281 133 20 chr9 70304002 70304100 -53772072 + MIRb SINE MIR 87 195 -73 7 1121 573 188 0 10 chr9 70304146 70304243 -53771929 + B3 SINE B2 58 153 -63 7 1121 27 0 0 0 chr9 70304316 70304343 -53771829 + AT_rich Low_complexity Low_complexity 1 27 0 7 1121 1161 88 71 6 chr9 70304753 70304935 -53771237 + B2_Mm2 SINE B2 2 195 0 7 1121 451 253 97 27 chr9 70305143 70305563 -53770609 - L1M4 LINE L1 -556 5624 5174 7 1121 367 268 0 0 chr9 70306214 70306296 -53769876 + ID4 SINE ID 2 83 0 7 1121 27 73 0 0 chr9 70306653 70306708 -53769464 + AT_rich Low_complexity Low_complexity 1 55 0 7 1121 2176 98 36 57 chr9 70307296 70307630 -53768542 + ORR1A2 LTR MaLR 1 327 0 7 1121 1209 114 16 5 chr9 70308426 70308611 -53767561 - B2_Mm1t SINE B2 -6 187 1 7 1121 689 253 47 6 chr9 70308669 70308840 -53767332 + B3A SINE B2 5 182 -16 8 1121 776 261 55 10 chr9 70308916 70309117 -53767055 + B3 SINE B2 1 210 -6 8 1121 617 174 0 80 chr9 70309144 70309269 -53766903 + B1_Mur4 SINE Alu 2 116 -34 8 1121 648 180 111 2 chr9 70309898 70310035 -53766137 + B3 SINE B2 1 149 -67 8 1121 197 65 0 31 chr9 70310035 70310067 -53766105 + (CATA)n Simple_repeat Simple_repeat 4 34 0 8 1121 487 210 70 91 chr9 70310067 70310128 -53766044 + B2_Mm2 SINE B2 145 195 0 8 1121 32923 54 19 8 chr9 70310933 70316047 -53760125 + L1Md_F3 LINE L1 418 5585 -298 8 1121 8324 30 1 1 chr9 70316048 70317032 -53759140 + L1Md_F3 LINE L1 5587 6570 -14 8 1121 208 102 41 0 chr9 70317078 70317127 -53759045 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 8 1121 612 321 0 6 chr9 70317747 70317904 -53758268 + RSINE1 SINE B4 2 157 -8 8 1121 28 0 0 0 chr9 70317905 70317933 -53758239 + AT_rich Low_complexity Low_complexity 1 28 0 8 1121 418 266 49 55 chr9 70318071 70318234 -53757938 + B4A SINE B4 130 291 -1 8 1121 534 196 0 0 chr9 70318248 70318360 -53757812 + GA-rich Low_complexity Low_complexity 4 115 0 8 1121 787 202 88 21 chr9 70318440 70318632 -53757540 + B3 SINE B2 1 205 -11 8 1121 26 30 0 0 chr9 70318643 70318676 -53757496 + AT_rich Low_complexity Low_complexity 1 33 0 8 1121 517 230 106 50 chr9 70318680 70318840 -53757332 + B3 SINE B2 48 216 0 8 1121 666 207 94 22 chr9 70319002 70319140 -53757032 + B1_Mur3 SINE Alu 2 149 0 8 1121 716 143 8 0 chr9 70319147 70319273 -53756899 + (TA)n Simple_repeat Simple_repeat 2 128 0 8 1121 207 0 0 0 chr9 70319840 70319863 -53756309 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1121 822 133 40 53 chr9 70320329 70320480 -53755692 + B1_Mur4 SINE Alu 2 150 0 8 1121 713 229 97 15 chr9 70320633 70320828 -53755344 - B3 SINE B2 -4 212 2 8 1121 807 176 119 84 chr9 70321517 70321803 -53754369 + Lx9 LINE L1 7274 7569 -75 8 1121 1351 61 66 0 chr9 70321828 70322009 -53754163 + B2_Mm2 SINE B2 1 193 -2 8 1121 218 284 0 129 chr9 70322152 70322174 -53753998 - ID_B1 SINE B4 -46 178 98 8 1121 293 157 24 66 chr9 70322174 70322245 -53753927 - PB1 SINE Alu -62 87 17 8 1121 280 232 27 68 chr9 70322315 70322389 -53753783 + PB1D10 SINE Alu 9 79 -38 8 1121 1457 48 10 45 chr9 70322581 70322779 -53753393 + B2_Mm1t SINE B2 2 192 -1 8 1121 1184 48 0 0 chr9 70322788 70322935 -53753237 + B1_Mus2 SINE Alu 1 147 0 8 1121 640 173 19 0 chr9 70322976 70323080 -53753092 + B1_Mur2 SINE Alu 36 141 -8 8 1121 214 211 0 37 chr9 70323080 70323134 -53753038 + (CAT)n Simple_repeat Simple_repeat 3 54 0 8 1121 633 181 0 28 chr9 70324873 70324981 -53751191 - B3 SINE B2 -107 109 5 8 1121 1252 93 66 0 chr9 70325291 70325473 -53750699 + B2_Mm2 SINE B2 2 195 0 8 1121 689 221 7 0 chr9 70325618 70325763 -53750409 - B1_Mur4 SINE Alu 0 150 5 8 1121 1286 94 6 16 chr9 70325851 70326034 -53750138 + B2_Mm2 SINE B2 1 181 -14 8 1121 427 294 15 53 chr9 70326093 70326119 -53750053 + MT2B LTR ERVL 131 151 -450 8 1121 637 178 95 4 chr9 70326119 70326260 -53749912 + B1_Mm SINE Alu 1 148 0 8 1121 309 350 89 31 chr9 70326436 70326660 -53749512 + L2 LINE L2 2807 3043 -376 8 1121 735 195 0 0 chr9 70326755 70326878 -53749294 + B1_Mus1 SINE Alu 1 123 -25 8 1121 236 220 51 0 chr9 70326886 70326945 -53749227 - PB1D10 SINE Alu -20 97 36 8 1121 1143 113 0 0 chr9 70326998 70327157 -53749015 + B2_Mm2 SINE B2 1 159 -36 8 1121 197 0 0 67 chr9 70327157 70327187 -53748985 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 8 1121 525 263 316 6 chr9 70327222 70327660 -53748512 - L1MB3 LINE L1 -256 6035 5456 8 1121 266 315 29 115 chr9 70327847 70327865 -53748307 + ID SINE ID 81 89 -135 8 1121 380 316 51 0 chr9 70327865 70327963 -53748209 + PB1D10 SINE Alu 4 106 -11 8 1121 189 0 0 0 chr9 70327963 70327984 -53748188 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1121 753 240 44 11 chr9 70328001 70328182 -53747990 + B3 SINE B2 30 216 0 8 1121 1216 118 37 0 chr9 70328296 70328483 -53747689 + B2_Mm2 SINE B2 2 195 0 8 1121 601 226 67 8 chr9 70328884 70329018 -53747154 - B1_Mur2 SINE Alu -6 143 2 8 1121 2240 303 59 40 chr9 70329159 70329530 -53746642 + Lx8 LINE L1 6384 6757 -716 8 1121 1309 62 45 0 chr9 70329530 70329709 -53746463 + B2_Mm2 SINE B2 1 187 -8 8 1121 2240 303 59 40 chr9 70329709 70330405 -53745767 + Lx8 LINE L1 6758 7471 -2 8 1121 1895 132 45 16 chr9 70330672 70330981 -53745191 + ORR1A3 LTR MaLR 1 318 -8 8 1121 2715 154 105 11 chr9 70331289 70331815 -53744357 - RMER15 LTR ERVL 0 575 1 8 1121 1105 124 0 0 chr9 70331920 70332081 -53744091 + B2_Mm2 SINE B2 2 162 -33 8 1121 180 0 0 0 chr9 70332081 70332101 -53744071 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 8 1121 645 229 107 0 chr9 70332191 70332322 -53743850 + B1_Mus2 SINE Alu 1 145 -2 8 1121 278 214 53 53 chr9 70332387 70332481 -53743691 + BC1_Mm scRNA scRNA 8 101 -51 8 1121 3630 129 97 24 chr9 70333049 70333747 -53742425 + RMER6A LTR ERVK 1 749 -7 8 1121 762 216 66 3 chr9 70335205 70335493 -53740679 - RMER10B LTR ERVL 0 398 1 8 1121 492 248 114 102 chr9 70335493 70335638 -53740534 + B3A SINE B2 27 174 -24 8 1121 315 0 0 0 chr9 70335638 70335673 -53740499 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1121 492 248 114 102 chr9 70335673 70335693 -53740479 + B3A SINE B2 175 194 -4 8 1121 777 102 0 25 chr9 70335697 70335818 -53740354 + B1_Mus2 SINE Alu 30 147 0 8 1121 202 68 44 22 chr9 70335820 70335865 -53740307 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 8 1121 766 298 39 0 chr9 70335879 70336087 -53740085 + ID_B1 SINE B4 3 218 -6 8 1121 1322 34 0 0 chr9 70336190 70336337 -53739835 + B1_Mus2 SINE Alu 1 147 0 8 1121 271 285 162 6 chr9 70336468 70336641 -53739531 + L1MC3 LINE L1 7196 7395 -390 8 1121 507 45 0 0 chr9 70336880 70336946 -53739226 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 8 1121 411 21 0 0 chr9 70337359 70337407 -53738765 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1121 398 229 68 115 chr9 70337428 70337467 -53738705 - B1F SINE Alu -8 141 98 8 1121 1230 51 0 0 chr9 70337467 70337605 -53738567 + B1_Mus1 SINE Alu 2 139 -9 8 1121 272 48 24 0 chr9 70337605 70337647 -53738525 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 8 1121 398 229 68 115 chr9 70337647 70337754 -53738418 - B1F SINE Alu -52 97 2 8 1121 410 42 0 9 chr9 70337878 70337933 -53738239 + L1_Mus2 LINE L1 6494 6548 -34 8 1121 1471 82 27 0 chr9 70337933 70338116 -53738056 + B2_Mm2 SINE B2 1 188 -7 8 1121 310 98 0 172 chr9 70338116 70338159 -53738013 + L1_Mus2 LINE L1 6549 6578 -4 8 1121 348 85 39 196 chr9 70338162 70338264 -53737908 + L1_Mus2 LINE L1 6496 6582 0 8 1121 299 281 175 0 chr9 70338265 70338379 -53737793 + MLT1B LTR MaLR 212 345 -45 8 1121 1241 119 5 30 chr9 70338452 70338651 -53737521 + B2_Mm2 SINE B2 2 195 0 8 1121 420 215 86 78 chr9 70338843 70338959 -53737213 + PB1D10 SINE Alu 1 117 0 8 1121 468 171 426 14 chr9 70339474 70339622 -53736550 - B3 SINE B2 -7 209 1 8 1121 287 239 15 0 chr9 70339956 70340023 -53736149 + ID4_ SINE ID 16 83 0 8 1121 180 0 0 0 chr9 70340367 70340387 -53735785 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1121 286 254 47 23 chr9 70340489 70340595 -53735577 + L1M5 LINE L1 5365 5474 -699 8 1121 1269 48 0 0 chr9 70340595 70340741 -53735431 + B1_Mus2 SINE Alu 2 147 0 8 1121 286 254 47 705 chr9 70340741 70340763 -53735409 + L1M5 LINE L1 5475 5496 -677 8 1121 183 42 0 0 chr9 70341396 70341420 -53734752 + (TTG)n Simple_repeat Simple_repeat 2 25 0 8 1121 346 289 41 0 chr9 70341425 70341522 -53734650 - PB1D10 SINE Alu -16 101 1 8 1121 316 292 44 100 chr9 70341587 70341670 -53734502 + ID SINE ID 4 77 -147 8 1121 311 269 77 77 chr9 70341670 70341787 -53734385 + PB1D10 SINE Alu 1 117 0 8 1121 520 183 67 9 chr9 70341797 70341902 -53734270 + B3 SINE B2 1 111 -105 8 1121 335 23 23 0 chr9 70341903 70341947 -53734225 + (CATA)n Simple_repeat Simple_repeat 2 46 0 8 1121 619 128 134 17 chr9 70342806 70342925 -53733247 + B1_Mur3 SINE Alu 16 148 -1 8 1121 1300 41 0 0 chr9 70343012 70343158 -53733014 + B1_Mm SINE Alu 2 147 0 8 1121 617 214 44 37 chr9 70343226 70343362 -53732810 + B1_Mur2 SINE Alu 5 141 -8 8 1121 341 299 183 6 chr9 70343563 70343738 -53732434 - MamRep137 DNA TcMar? -115 329 124 8 1121 281 326 101 13 chr9 70343743 70343892 -53732280 + RSINE1 SINE B4 2 163 -2 8 1121 1394 99 5 40 chr9 70343937 70344136 -53732036 - B2_Mm1t SINE B2 -1 192 1 8 1121 1246 49 0 0 chr9 70344146 70344288 -53731884 - B1_Mus1 SINE Alu -6 142 1 8 1121 25 31 0 0 chr9 70344364 70344396 -53731776 + AT_rich Low_complexity Low_complexity 1 32 0 8 1121 1056 99 35 0 chr9 70344415 70344556 -53731616 + B1_Mus1 SINE Alu 2 147 -1 8 1121 454 311 72 26 chr9 70345411 70345563 -53730609 + RSINE1 SINE B4 3 161 -4 8 1121 450 79 0 0 chr9 70345570 70345633 -53730539 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1121 508 259 216 30 chr9 70345691 70346061 -53730111 - Charlie1a DNA MER1_type 0 1455 1017 8 1121 254 282 0 82 chr9 70346175 70346197 -53729975 + B4 SINE B4 215 231 -61 8 1121 2107 191 100 77 chr9 70346197 70346718 -53729454 + MT2A LTR ERVL 1 533 0 8 1121 254 282 0 82 chr9 70346718 70346780 -53729392 + B4 SINE B4 232 292 0 8 1121 216 316 59 30 chr9 70346800 70346822 -53729350 - B4 SINE B4 -188 104 1 8 1121 343 279 0 0 chr9 70346822 70346901 -53729271 - BC1_Mm scRNA scRNA -73 79 1 9 1121 1420 80 26 11 chr9 70346910 70347099 -53729073 - B2_Mm2 SINE B2 -3 192 1 9 1121 960 53 0 68 chr9 70347580 70347765 -53728407 + B1_Mm SINE Alu 2 148 0 9 1121 553 195 136 0 chr9 70347848 70347966 -53728206 + B1_Mus1 SINE Alu 14 147 -1 9 1121 236 264 102 11 chr9 70347986 70348074 -53728098 + ID_B1 SINE B4 121 216 -8 9 1121 212 0 36 0 chr9 70348775 70348803 -53727369 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1121 1280 14 0 0 chr9 70348803 70348941 -53727231 - B1_Mus1 SINE Alu -10 138 1 9 1121 344 277 102 51 chr9 70349241 70349359 -53726813 + PB1 SINE Alu 3 126 -23 9 1121 233 325 43 71 chr9 70349270 70349525 -53726647 + RLTR25B LTR ERVK 274 521 -507 9 1121 747 55 0 0 chr9 70349446 70349537 -53726635 + B1_Mus2 SINE Alu 47 137 -10 9 1121 207 0 0 0 chr9 70349537 70349560 -53726612 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1121 381 266 205 27 chr9 70349737 70349849 -53726323 - B1_Mm SINE Alu -9 138 7 9 1121 602 276 41 0 chr9 70350039 70350209 -53725963 + B3A SINE B2 5 181 -17 9 1121 250 284 7 36 chr9 70351128 70351267 -53724905 + C-rich Low_complexity Low_complexity 4 138 0 9 1121 216 196 19 19 chr9 70351494 70351546 -53724626 + (CCG)n Simple_repeat Simple_repeat 2 53 0 9 1121 228 306 133 16 chr9 70352085 70352275 -53723897 + MIRc SINE MIR 15 227 -41 9 1121 191 36 0 35 chr9 70352372 70352401 -53723771 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1121 582 103 165 0 chr9 70352401 70352498 -53723674 - B1_Mus1 SINE Alu -9 139 27 9 1121 297 0 0 0 chr9 70352614 70352647 -53723525 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 9 1121 839 115 15 15 chr9 70352662 70352794 -53723378 - B1_Mus2 SINE Alu -1 146 15 9 1121 456 196 0 71 chr9 70352708 70352807 -53723365 - MT2B LTR ERVL -344 257 166 9 1121 192 152 0 0 chr9 70353099 70353132 -53723040 + GA-rich Low_complexity Low_complexity 4 36 0 9 1121 474 305 113 0 chr9 70353279 70353456 -53722716 + MER20 DNA MER1_type 1 197 -22 9 1121 425 93 27 0 chr9 70353573 70353648 -53722524 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 9 1121 976 124 73 0 chr9 70353942 70354079 -53722093 + B1_Mus1 SINE Alu 1 147 -1 9 1121 352 310 29 52 chr9 70355361 70355497 -53720675 + RSINE1 SINE B4 1 133 -32 9 1121 21 57 0 0 chr9 70355510 70355545 -53720627 + AT_rich Low_complexity Low_complexity 1 35 0 9 1121 1149 103 0 0 chr9 70355546 70355692 -53720480 + B1_Mus2 SINE Alu 1 146 -1 9 1121 1005 213 32 5 chr9 70355723 70355912 -53720260 + B3 SINE B2 16 209 -7 9 1121 1061 263 56 0 chr9 70356386 70356637 -53719535 - B4A SINE B4 -20 272 8 9 1121 312 27 0 0 chr9 70356816 70356853 -53719319 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 9 1121 708 248 0 7 chr9 70356853 70356991 -53719181 - B1_Mur2 SINE Alu -12 137 1 9 1121 243 0 0 0 chr9 70357003 70357030 -53719142 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1121 1249 50 0 0 chr9 70357030 70357169 -53719003 - B1_Mus2 SINE Alu -8 139 1 9 1121 26 50 0 0 chr9 70357216 70357256 -53718916 + AT_rich Low_complexity Low_complexity 1 40 0 9 1121 324 0 0 0 chr9 70357256 70357292 -53718880 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1121 306 0 0 0 chr9 70357292 70357326 -53718846 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1121 1165 63 42 0 chr9 70357328 70357470 -53718702 - B1_Mus1 SINE Alu 0 148 1 9 1121 1432 82 21 21 chr9 70357491 70357679 -53718493 + B2_Mm2 SINE B2 3 190 -5 9 1121 321 299 18 61 chr9 70357778 70357892 -53718280 + PB1D10 SINE Alu 1 109 -8 9 1121 348 281 47 117 chr9 70357918 70358132 -53718040 + Charlie13a DNA Charlie 1017 1215 -299 9 1121 551 289 28 7 chr9 70358708 70358851 -53717321 - B3A SINE B2 -47 151 6 9 1121 533 272 22 22 chr9 70359288 70359427 -53716745 + RSINE1 SINE B4 3 141 -24 9 1121 226 324 17 51 chr9 70359804 70359921 -53716251 + MLT2B3 LTR ERVL 192 304 -250 9 1121 799 230 79 11 chr9 70360326 70360515 -53715657 - B3 SINE B2 -14 202 1 9 1121 291 313 52 0 chr9 70360552 70360686 -53715486 + HAL1 LINE L1 1046 1186 -1321 9 1121 223 118 58 19 chr9 70360697 70360749 -53715423 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 1121 935 144 20 7 chr9 70360815 70360962 -53715210 - B1_Mur4 SINE Alu -1 149 1 9 1121 733 250 56 36 chr9 70361072 70361321 -53714851 - L1M4 LINE L1 -443 5731 5478 9 1121 422 221 0 128 chr9 70361325 70361434 -53714738 - PB1 SINE Alu -3 124 23 9 1121 797 142 6 119 chr9 70361584 70361743 -53714429 + B1_Mur4 SINE Alu 2 141 -9 9 1121 186 43 0 0 chr9 70361743 70361766 -53714406 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1121 783 223 0 33 chr9 70361784 70361937 -53714235 + B1_Mur4 SINE Alu 3 150 0 9 1121 243 0 0 0 chr9 70362092 70362119 -53714053 + (TA)n Simple_repeat Simple_repeat 2 28 0 9 1121 349 313 75 15 chr9 70362246 70362379 -53713793 - B1F SINE Alu -8 141 1 9 1121 1273 62 0 0 chr9 70362467 70362613 -53713559 + B1_Mus2 SINE Alu 2 147 0 9 1121 207 0 0 0 chr9 70362627 70362650 -53713522 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1121 575 276 9 0 chr9 70362672 70362788 -53713384 + B1_Mur1 SINE Alu 1 117 -32 9 1121 198 0 0 0 chr9 70362811 70362833 -53713339 + (TCTG)n Simple_repeat Simple_repeat 3 24 0 9 1121 255 167 0 0 chr9 70362952 70363018 -53713154 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 1121 243 200 0 0 chr9 70363161 70363206 -53712966 + T-rich Low_complexity Low_complexity 1 45 0 9 1121 967 148 42 0 chr9 70363206 70363348 -53712824 - B1_Mus1 SINE Alu 0 148 1 9 1121 1381 94 10 20 chr9 70363377 70363572 -53712600 + B2_Mm1t SINE B2 1 193 0 9 1121 252 0 0 0 chr9 70364026 70364054 -53712118 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 9 1121 730 175 292 0 chr9 70364602 70364756 -53711416 - B3 SINE B2 -13 203 5 9 1121 307 130 11 154 chr9 70364770 70364861 -53711311 - RLTR25A LTR ERVK -504 599 522 9 1121 559 176 8 77 chr9 70364790 70364907 -53711265 - B1_Mm SINE Alu -34 113 5 9 1121 501 200 29 39 chr9 70365006 70365110 -53711062 + U6 snRNA snRNA 1 103 -4 9 1121 264 167 0 0 chr9 70365111 70365159 -53711013 + (TA)n Simple_repeat Simple_repeat 1 48 0 9 1121 526 261 119 52 chr9 70365208 70365612 -53710560 + L1MC LINE L1 2662 3092 -3054 9 1121 300 262 0 0 chr9 70365713 70365774 -53710398 + B4A SINE B4 1 61 -231 9 1121 278 274 0 52 chr9 70365865 70365942 -53710230 - ID4 SINE ID -9 74 2 9 1121 740 229 7 7 chr9 70365996 70366137 -53710035 - RSINE1 SINE B4 -21 144 4 9 1121 418 162 0 14 chr9 70366144 70366213 -53709959 - B1_Mur1 SINE Alu -2 147 80 9 1121 219 69 0 0 chr9 70366220 70366249 -53709923 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 9 1121 731 253 102 10 chr9 70366249 70366439 -53709733 - ID_B1 SINE B4 -13 211 2 9 1121 278 278 43 100 chr9 70366513 70366581 -53709591 - B4 SINE B4 -71 221 90 9 1121 378 139 56 0 chr9 70366581 70366653 -53709519 - B1_Mur3 SINE Alu -69 80 5 9 1121 21 0 0 0 chr9 70366727 70366748 -53709424 + AT_rich Low_complexity Low_complexity 1 21 0 9 1121 252 88 70 0 chr9 70366785 70366842 -53709330 - B2_Mm1t SINE B2 -2 191 131 9 1121 313 164 0 18 chr9 70366836 70366892 -53709280 - B2_Mm2 SINE B2 -94 101 47 9 1121 1269 105 12 0 chr9 70366944 70367115 -53709057 - B2_Mm1t SINE B2 -19 174 2 9 1121 216 86 0 0 chr9 70367697 70367732 -53708440 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1121 397 57 19 0 chr9 70367739 70367792 -53708380 + B1_Mur3 SINE Alu 83 136 -13 9 1121 207 88 0 0 chr9 70367796 70367830 -53708342 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 9 1121 971 149 0 21 chr9 70367841 70367985 -53708187 + B1_Mur3 SINE Alu 3 143 -6 9 1121 183 204 0 0 chr9 70367987 70368041 -53708131 + A-rich Low_complexity Low_complexity 1 54 0 9 1121 429 279 110 15 chr9 70368189 70368389 -53707783 + L1MC LINE L1 3522 3740 -2406 9 1121 787 110 8 8 chr9 70368466 70368585 -53707587 + B1_Mur3 SINE Alu 15 133 -16 9 1121 514 321 12 2 chr9 70368677 70368826 -53707346 + B3A SINE B2 51 203 -13 9 1121 300 271 80 14 chr9 70368838 70369060 -53707112 + L1M5 LINE L1 3729 3969 -2177 9 1121 924 219 78 5 chr9 70369085 70369278 -53706894 + B3 SINE B2 1 207 -9 9 1121 288 130 0 0 chr9 70369289 70369335 -53706837 + (T)n Simple_repeat Simple_repeat 1 46 0 9 1121 954 56 0 0 chr9 70369404 70369511 -53706661 - U6 snRNA snRNA 0 107 1 9 1121 201 74 0 0 chr9 70369518 70369545 -53706627 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 9 1121 1111 229 82 16 chr9 70369592 70369898 -53706274 + Lx8 LINE L1 7050 7375 -98 9 1121 1250 105 22 16 chr9 70369981 70370165 -53706007 + B2_Mm2 SINE B2 1 185 -10 9 1121 1157 170 0 27 chr9 70370173 70370360 -53705812 + B3 SINE B2 1 182 -34 9 1121 1100 83 95 0 chr9 70370663 70370831 -53705341 - B2_Mm2 SINE B2 -5 190 7 9 1121 1757 36 0 0 chr9 70370834 70371027 -53705145 - B2_Mm1t SINE B2 0 193 1 9 1121 1318 34 0 0 chr9 70371085 70371231 -53704941 + B1_Mm SINE Alu 2 147 0 9 1121 204 40 0 0 chr9 70371231 70371256 -53704916 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1121 969 171 0 0 chr9 70371266 70371412 -53704760 + B1_Mus1 SINE Alu 3 148 0 1 1121 536 238 262 10 chr9 70371482 70371784 -53704388 + L1M2 LINE L1 4097 4474 -1669 1 1121 505 289 15 7 chr9 70371785 70371921 -53704251 + ID_B1 SINE B4 84 220 -4 1 1121 291 253 92 20 chr9 70371927 70372080 -53704092 + L1M2 LINE L1 4470 4633 -1510 1 1121 342 18 3 0 chr9 70372669 70372718 -53703454 + (CAAAA)n Simple_repeat Simple_repeat 1 49 0 1 1121 1268 48 7 0 chr9 70372718 70372864 -53703308 + B1_Mus2 SINE Alu 1 147 0 1 1121 227 118 20 0 chr9 70372864 70372907 -53703265 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 1 1121 349 352 95 13 chr9 70372937 70373242 -53702930 + L1ME2 LINE L1 5705 6034 -130 1 1121 944 245 34 5 chr9 70373338 70373547 -53702625 + B3 SINE B2 2 216 0 1 1121 328 274 43 34 chr9 70374008 70374125 -53702047 - MLT1J2 LTR MaLR -243 205 88 1 1121 275 246 0 47 chr9 70374196 70374260 -53701912 + ID4 SINE ID 23 83 0 1 1121 506 320 44 10 chr9 70374481 70374686 -53701486 + Tigger13a DNA MER2_type 88 299 -472 1 1121 578 14 14 0 chr9 70374962 70375033 -53701139 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1121 593 182 27 0 chr9 70375045 70375193 -53700979 + GA-rich Low_complexity Low_complexity 2 153 0 1 1121 218 272 74 0 chr9 70375799 70375880 -53700292 - L2 LINE L2 -992 2427 2341 1 1121 460 120 14 43 chr9 70375973 70376087 -53700085 + T-rich Low_complexity Low_complexity 28 138 0 1 1121 1319 28 0 0 chr9 70376087 70376232 -53699940 - B1_Mm SINE Alu -2 145 1 1 1121 460 120 14 43 chr9 70376232 70376256 -53699916 + T-rich Low_complexity Low_complexity 4 27 0 1 1121 332 215 37 25 chr9 70376502 70376583 -53699589 - ID2 SINE ID 0 83 2 1 1121 315 0 0 0 chr9 70376901 70376936 -53699236 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1121 1189 59 0 0 chr9 70376936 70377072 -53699100 - B1_Mm SINE Alu -11 136 1 1 1121 233 290 145 0 chr9 70377356 70377418 -53698754 - B1F SINE Alu -78 71 1 1 1121 649 262 8 0 chr9 70377418 70377497 -53698675 - ID SINE ID -143 81 2 1 1121 984 151 0 0 chr9 70377572 70377711 -53698461 + B1_Mur4 SINE Alu 2 140 -10 1 1121 878 174 0 6 chr9 70377725 70377808 -53698364 + polypurine Low_complexity Low_complexity 2 84 0 1 1121 1202 88 0 0 chr9 70377808 70377956 -53698216 + B1_Mus1 SINE Alu 1 148 0 1 1121 878 174 0 6 chr9 70377956 70378045 -53698127 + polypurine Low_complexity Low_complexity 85 173 0 1 1121 239 254 31 16 chr9 70378123 70378187 -53697985 - ID4_ SINE ID -10 73 9 1 1121 222 118 0 0 chr9 70378588 70378622 -53697550 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1121 1235 48 0 0 chr9 70378675 70378822 -53697350 - B1_Mus2 SINE Alu 0 147 1 1 1121 612 220 0 0 chr9 70378931 70379049 -53697123 - B1_Mus1 SINE Alu -30 118 1 1 1121 1194 29 50 0 chr9 70379152 70379292 -53696880 + B1_Mm SINE Alu 1 147 0 1 1121 1307 41 0 0 chr9 70379407 70379554 -53696618 - B1_Mus2 SINE Alu 0 147 1 1 1121 1335 14 7 0 chr9 70379740 70379885 -53696287 - B1_Mus2 SINE Alu 0 147 2 1 1121 302 156 13 18 chr9 70379930 70379995 -53696177 - B2_Mm2 SINE B2 -83 115 46 1 1121 1145 139 35 0 chr9 70380060 70380233 -53695939 - B2_Mm1t SINE B2 -14 179 1 1 1121 965 278 14 5 chr9 70380261 70380471 -53695701 + B3 SINE B2 3 214 -2 1 1121 230 328 0 0 chr9 70380476 70380537 -53695635 - tRNA-Ala-GCA tRNA tRNA -14 61 1 1 1121 810 196 14 0 chr9 70380564 70380707 -53695465 - B1_Mm SINE Alu -2 145 1 1 1121 1242 81 0 0 chr9 70380754 70380902 -53695270 + B1_Mus1 SINE Alu 1 148 0 1 1121 249 33 0 0 chr9 70380908 70380938 -53695234 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1121 31 92 0 0 chr9 70380947 70381034 -53695138 + AT_rich Low_complexity Low_complexity 1 87 0 1 1121 505 264 25 10 chr9 70381138 70381355 -53694817 - L1ME3A LINE L1 -292 5881 5622 1 1121 603 296 72 11 chr9 70381472 70381653 -53694519 - B3A SINE B2 -5 193 2 1 1121 905 179 0 14 chr9 70382134 70382281 -53693891 + B1_Mus1 SINE Alu 1 145 -3 1 1121 285 321 41 114 chr9 70382338 70382461 -53693711 - PB1D10 SINE Alu -3 114 1 1 1121 712 242 0 98 chr9 70382461 70382540 -53693632 - ID SINE ID -157 67 7 1 1121 462 159 0 0 chr9 70382975 70383044 -53693128 - B1_Mur1 SINE Alu -7 142 74 1 1121 344 214 21 43 chr9 70383044 70383065 -53693107 - ID_B1 SINE B4 -4 217 130 1 1121 428 247 20 20 chr9 70383160 70383259 -53692913 - B1F SINE Alu -4 145 47 1 1121 887 254 19 10 chr9 70383342 70383549 -53692623 + B3 SINE B2 1 209 -7 1 1121 518 274 78 18 chr9 70383767 70383986 -53692186 - L1ME3A LINE L1 -1465 4681 4450 1 1121 275 330 9 26 chr9 70384142 70384257 -53691915 - PB1D10 SINE Alu -2 115 3 1 1121 21 36 0 0 chr9 70384534 70384562 -53691610 + AT_rich Low_complexity Low_complexity 1 28 0 1 1121 714 230 52 0 chr9 70384562 70384697 -53691475 - B1_Mur3 SINE Alu 0 149 8 1 1121 293 318 90 99 chr9 70384606 70384829 -53691343 - MT2B LTR ERVL -344 257 37 1 1121 305 242 32 0 chr9 70384852 70384914 -53691258 - ID4 SINE ID -8 75 12 1 1121 266 167 0 0 chr9 70384919 70384961 -53691211 - ID4 SINE ID -26 57 16 1 1121 415 284 54 16 chr9 70384962 70385091 -53691081 - B1F SINE Alu 0 149 16 1 1121 344 333 75 48 chr9 70385091 70385148 -53691024 - ID_B1 SINE B4 0 224 34 1 1121 1343 34 0 0 chr9 70385281 70385429 -53690743 - B1_Mus1 SINE Alu 0 148 1 1 1121 636 78 29 19 chr9 70385517 70385621 -53690551 - B2_Mm2 SINE B2 -5 190 86 1 140 760 78 0 10 chr9 70385620 70385723 -53690449 + U6 snRNA snRNA 1 102 -5 1 1122 773 50 0 10 chr9 70385751 70385851 -53690321 - B2_Mm2 SINE B2 -95 100 2 1 1122 246 173 4 0 chr9 70385856 70385902 -53690270 - B1_Mur4 SINE Alu -19 101 55 1 1122 1026 143 20 0 chr9 70386379 70386526 -53689646 + B1_Mur4 SINE Alu 1 150 0 1 1122 219 286 32 0 chr9 70387080 70387143 -53689029 - PB1D10 SINE Alu 0 117 53 1 1122 464 298 12 65 chr9 70387586 70387755 -53688417 - RSINE1 SINE B4 -3 162 3 1 1122 233 290 0 28 chr9 70387913 70387984 -53688188 - ID4 SINE ID -13 70 2 1 1122 232 274 69 86 chr9 70388801 70388917 -53687255 + MIRc SINE MIR 9 122 -146 1 1122 279 0 0 0 chr9 70389084 70389115 -53687057 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 1122 270 0 0 0 chr9 70389165 70389195 -53686977 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1122 560 175 53 53 chr9 70389197 70389330 -53686842 - B1_Mus1 SINE Alu -13 135 3 1 1122 818 225 79 19 chr9 70389408 70389737 -53686435 + RMER17C LTR ERVK 3 387 -23 1 1122 24 32 0 0 chr9 70390583 70390614 -53685558 + GC_rich Low_complexity Low_complexity 1 31 0 1 1122 264 158 0 0 chr9 70390626 70390683 -53685489 + (CCG)n Simple_repeat Simple_repeat 2 58 0 1 1122 23 0 0 0 chr9 70390982 70391005 -53685167 + GC_rich Low_complexity Low_complexity 1 23 0 1 1122 980 125 14 7 chr9 70392775 70392920 -53683252 + B1_Mus1 SINE Alu 3 148 0 1 1122 1154 83 14 0 chr9 70393241 70393385 -53682787 + B1_Mus1 SINE Alu 3 148 0 1 1122 1312 54 0 0 chr9 70394329 70394477 -53681695 + B1_Mus1 SINE Alu 1 148 0 1 1122 245 0 0 79 chr9 70394477 70394515 -53681657 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1122 318 237 105 76 chr9 70395703 70395808 -53680364 - B3 SINE B2 -9 207 100 1 1122 252 222 85 12 chr9 70395838 70395920 -53680252 - RLTR12B LTR ERVK -42 486 399 1 1122 642 268 23 42 chr9 70395995 70396209 -53679963 - RLTR12B LTR ERVK -318 210 1 1 1122 185 354 89 37 chr9 70396459 70396594 -53679578 - MER5B DNA MER1_type -25 153 12 1 1122 260 0 57 0 chr9 70396734 70396769 -53679403 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 1 1122 303 282 0 13 chr9 70396845 70396924 -53679248 - B3 SINE B2 -137 79 2 1 1122 1611 38 11 5 chr9 70397124 70397311 -53678861 - B2_Mm1t SINE B2 -4 189 2 1 1122 377 289 58 0 chr9 70397574 70397678 -53678494 + PB1D10 SINE Alu 1 110 -7 1 1122 484 212 60 10 chr9 70397761 70397861 -53678311 + RSINE1 SINE B4 2 106 -59 1 1122 1492 75 16 5 chr9 70397997 70398185 -53677987 - B2_Mm2 SINE B2 -5 190 1 1 1122 270 235 14 56 chr9 70398242 70398314 -53677858 - ID4 SINE ID -13 70 2 1 1122 189 0 0 0 chr9 70398519 70398540 -53677632 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1122 29 47 0 0 chr9 70398589 70398632 -53677540 + AT_rich Low_complexity Low_complexity 1 43 0 1 1122 799 187 22 0 chr9 70398643 70398777 -53677395 - B1_Mus2 SINE Alu -8 139 3 1 1122 497 191 42 42 chr9 70398981 70399101 -53677071 + PB1D9 SINE Alu 1 120 0 1 1122 183 286 0 31 chr9 70399962 70400027 -53676145 + MIRm SINE MIR 74 136 -140 1 1122 937 145 74 58 chr9 70400035 70400048 -53676124 - B2_Mm2 SINE B2 -2 193 182 1 1122 740 92 8 0 chr9 70400048 70400167 -53676005 + (TTTTC)n Simple_repeat Simple_repeat 3 122 0 1 1122 937 145 74 58 chr9 70400167 70400343 -53675829 - B2_Mm2 SINE B2 -14 181 1 1 1122 1049 116 0 20 chr9 70400361 70400510 -53675662 - B1_Mus1 SINE Alu -2 146 1 1 1122 2186 163 38 23 chr9 70400794 70401221 -53674951 - BGLII_B LTR ERVK -8 433 1 1 1122 6644 157 41 31 chr9 70401221 70402433 -53673739 - MYSERV16_I-int LTR ERVK 0 2326 1080 1 1122 746 55 0 0 chr9 70402433 70402524 -53673648 + 4.5SRNA scRNA scRNA 1 91 -3 1 1122 1632 22 27 11 chr9 70402527 70402695 -53673477 + B2_Mm1a SINE B2 1 168 -25 1 1122 207 0 0 0 chr9 70402695 70402718 -53673454 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1122 1632 22 27 11 chr9 70402718 70402732 -53673440 + B2_Mm1a SINE B2 169 186 -7 1 1122 6644 157 41 31 chr9 70402732 70402793 -53673379 - MYSERV16_I-int LTR ERVK -1247 1079 1037 1 1122 229 140 176 49 chr9 70402793 70402875 -53673297 - RMER4B LTR ERVK -46 539 452 1 1122 955 237 65 50 chr9 70402879 70403217 -53672955 - MYSERV16_I-int LTR ERVK -1388 938 596 1 1122 924 142 7 7 chr9 70403217 70403366 -53672806 - BGLII_B LTR ERVK -292 149 1 1 1122 455 171 8 133 chr9 70403662 70403790 -53672382 + MT2B LTR ERVL 153 264 -337 1 1122 1024 39 0 0 chr9 70403677 70403805 -53672367 + B1_Mus1 SINE Alu 1 128 -20 1 1122 1416 88 16 16 chr9 70403968 70404152 -53672020 - B2_Mm2 SINE B2 -9 186 3 1 1122 716 254 61 0 chr9 70404176 70404357 -53671815 - B3 SINE B2 0 216 25 1 1122 28 48 0 0 chr9 70404577 70404619 -53671553 + AT_rich Low_complexity Low_complexity 1 42 0 1 1122 672 239 7 7 chr9 70404681 70404820 -53671352 + B1F SINE Alu 1 139 -10 1 1122 1564 73 16 0 chr9 70405009 70405201 -53670971 + B2_Mm2 SINE B2 1 195 0 1 1122 1263 59 148 0 chr9 70405203 70405372 -53670800 + B2_Mm2 SINE B2 2 195 0 1 1122 1255 56 0 0 chr9 70405549 70405692 -53670480 - B1_Mus2 SINE Alu 0 147 5 1 1122 466 246 93 34 chr9 70406270 70406388 -53669784 - ID_B1 SINE B4 -11 213 89 1 1122 283 224 9 117 chr9 70406330 70406441 -53669731 + YREP_Mm Unknown Unknown 253 351 -1461 1 1122 190 29 57 29 chr9 70406656 70406691 -53669481 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 1 1122 244 219 44 59 chr9 70407092 70407160 -53669012 + B4 SINE B4 85 151 -141 1 1122 638 161 333 6 chr9 70408120 70408282 -53667890 - B3 SINE B2 -1 215 1 1 1122 191 164 94 33 chr9 70410610 70410674 -53665498 - MIR SINE MIR -124 144 76 1 1122 872 235 16 11 chr9 70411358 70411543 -53664629 + B3 SINE B2 2 187 -29 1 1122 240 310 20 112 chr9 70412169 70412267 -53663905 + PB1D7 SINE Alu 24 112 -8 1 1122 231 193 191 12 chr9 70412648 70412732 -53663440 - L1MC5 LINE L1 -365 7596 7498 1 1122 438 309 0 16 chr9 70412794 70412919 -53663253 - MER58A DNA MER1_type -37 187 65 1 1122 281 276 50 25 chr9 70412943 70413062 -53663110 - L1MC5 LINE L1 -527 7434 7313 1 1122 356 265 34 129 chr9 70413154 70413449 -53662723 - L1MC5 LINE L1 -822 7139 6873 1 1122 611 182 28 146 chr9 70414012 70414224 -53661948 + B2_Mm2 SINE B2 2 188 -7 1 1122 1680 52 0 10 chr9 70414428 70414623 -53661549 + B2_Mm1a SINE B2 1 193 0 1 1122 1498 64 43 0 chr9 70414633 70414820 -53661352 + B2_Mm2 SINE B2 1 195 0 1 1122 431 178 41 0 chr9 70414824 70414897 -53661275 + ID SINE ID 3 78 -146 1 1122 813 123 126 63 chr9 70415047 70415221 -53660951 - B2_Mm2 SINE B2 -9 186 2 1 1122 769 174 78 28 chr9 70415299 70415441 -53660731 + B1_Mur2 SINE Alu 1 149 0 1 1122 836 205 166 11 chr9 70415443 70415630 -53660542 + B3 SINE B2 1 216 0 1 1122 420 55 0 0 chr9 70416021 70416076 -53660096 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1122 652 210 25 0 chr9 70416076 70416195 -53659977 - RSINE1 SINE B4 -41 124 3 1 1122 276 204 0 0 chr9 70416965 70417019 -53659153 + B3A SINE B2 1 54 -144 1 1122 402 85 0 0 chr9 70417029 70417088 -53659084 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1122 26 30 0 0 chr9 70417261 70417294 -53658878 + AT_rich Low_complexity Low_complexity 1 33 0 1 1122 267 304 14 0 chr9 70417302 70417371 -53658801 + B3A SINE B2 1 70 -128 1 1122 511 295 67 73 chr9 70417624 70417772 -53658400 + B3A SINE B2 1 147 -48 1 1122 210 37 0 0 chr9 70417772 70417799 -53658373 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 1122 399 295 67 73 chr9 70417799 70417829 -53658343 + B2_Mm2 SINE B2 148 178 -17 1 1122 748 301 42 57 chr9 70417874 70418138 -53658034 + B4A SINE B4 32 291 -1 1 1122 784 100 225 0 chr9 70418502 70418622 -53657550 + B1_Mus1 SINE Alu 2 148 0 1 1122 1256 36 0 0 chr9 70419264 70419401 -53656771 + B1_Mm SINE Alu 2 138 -9 1 1122 496 194 87 58 chr9 70419462 70419566 -53656606 + RSINE1 SINE B4 4 110 -55 1 1122 345 148 0 0 chr9 70421955 70422036 -53654136 + (T)n Simple_repeat Simple_repeat 1 81 0 1 1122 720 132 17 9 chr9 70423946 70424061 -53652111 + B1_Mus1 SINE Alu 33 148 0 1 1122 190 238 0 0 chr9 70424474 70424516 -53651656 - L2 LINE L2 -509 2910 2869 1 1122 915 203 120 0 chr9 70424732 70424924 -53651248 - B3 SINE B2 0 216 2 1 1122 615 62 0 0 chr9 70425253 70425333 -53650839 + (TTCTC)n Simple_repeat Simple_repeat 4 83 0 1 1122 819 198 15 70 chr9 70425335 70425536 -53650636 - B2_Mm1a SINE B2 -2 191 2 1 1122 381 43 0 0 chr9 70425614 70425661 -53650511 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1122 1534 78 16 0 chr9 70425778 70425970 -53650202 - B2_Mm2 SINE B2 0 195 1 1 1122 242 128 0 41 chr9 70426536 70426585 -53649587 + T-rich Low_complexity Low_complexity 2 48 0 1 1122 372 297 26 1 chr9 70427529 70427632 -53648540 + PB1D10 SINE Alu 10 116 -33 1 1122 211 311 0 0 chr9 70427635 70427680 -53648492 - B1F1 SINE Alu -104 45 1 1 1122 189 0 0 0 chr9 70428566 70428587 -53647585 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1122 257 298 87 72 chr9 70428812 70429007 -53647165 - B3A SINE B2 0 198 1 1 1122 545 227 42 8 chr9 70429497 70429617 -53646555 - MIRc SINE MIR -140 128 5 1 1122 652 274 112 95 chr9 70430086 70430550 -53645622 - MER20B DNA MER1_type -17 766 295 1 1122 854 209 7 0 chr9 70431169 70431317 -53644855 + B1F2 SINE Alu 1 149 0 1 1122 413 45 284 0 chr9 70431390 70431457 -53644715 + BC1_Mm scRNA scRNA 1 86 -66 1 1122 24 0 0 0 chr9 70432920 70432944 -53643228 + AT_rich Low_complexity Low_complexity 1 24 0 1 1122 1084 262 14 14 chr9 70433230 70433524 -53642648 + B4A SINE B4 3 292 0 1 1122 218 260 48 72 chr9 70434070 70434153 -53642019 + PB1D9 SINE Alu 38 118 -2 1 1122 556 222 231 12 chr9 70435062 70435235 -53640937 - B3 SINE B2 -3 213 3 1 1122 1050 75 82 0 chr9 70435260 70435394 -53640778 - B1_Mur4 SINE Alu -1 149 5 1 1122 466 227 41 32 chr9 70435539 70435662 -53640510 - B4A SINE B4 -49 243 120 1 1122 212 245 20 0 chr9 70435689 70435738 -53640434 + CT-rich Low_complexity Low_complexity 3 52 0 1 1122 201 39 0 0 chr9 70435739 70435765 -53640407 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1122 336 151 192 0 chr9 70435765 70435838 -53640334 - PB1D9 SINE Alu -11 109 23 1 1122 429 259 75 27 chr9 70435790 70435937 -53640235 - B4 SINE B4 -137 155 2 1 1122 224 325 12 24 chr9 70437498 70437583 -53638589 - PB1D10 SINE Alu -2 115 32 1 1122 500 176 0 10 chr9 70437606 70437709 -53638463 + CT-rich Low_complexity Low_complexity 1 102 0 1 1122 908 149 20 41 chr9 70437709 70437856 -53638316 - B1_Mur2 SINE Alu -1 148 5 1 1122 682 64 339 0 chr9 70438431 70438540 -53637632 + B1_Mus2 SINE Alu 2 147 0 1 1122 1072 136 7 0 chr9 70439039 70439186 -53636986 + B1_Mur4 SINE Alu 2 149 -1 1 1122 447 162 0 0 chr9 70440362 70440442 -53635730 + GA-rich Low_complexity Low_complexity 1 80 0 1 1122 765 183 20 34 chr9 70440938 70441085 -53635087 - B1_Mur3 SINE Alu 0 149 5 1 1122 429 104 0 0 chr9 70441145 70441222 -53634950 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1122 460 214 20 20 chr9 70441600 70441695 -53634477 + B4A SINE B4 2 96 -196 1 1122 967 138 71 44 chr9 70441695 70441877 -53634295 + B2_Mm2 SINE B2 1 187 -8 1 1122 482 274 0 8 chr9 70442156 70442274 -53633898 + PB1D7 SINE Alu 3 119 -1 1 1122 231 234 43 0 chr9 70442278 70442325 -53633847 + B4A SINE B4 237 285 -7 1 1122 211 267 290 32 chr9 70443129 70443222 -53632950 + PB1D10 SINE Alu 1 117 0 1 1122 480 202 105 9 chr9 70443225 70443330 -53632842 + PB1D10 SINE Alu 3 117 0 1 1122 332 269 65 37 chr9 70443331 70443439 -53632733 + PB1D9 SINE Alu 1 111 -9 1 1122 455 228 203 8 chr9 70443498 70443626 -53632546 + B3 SINE B2 54 206 -10 1 1122 427 149 0 26 chr9 70443684 70443760 -53632412 + RMER10B LTR ERVL 274 347 -51 1 1122 211 265 0 39 chr9 70443820 70443871 -53632301 - B3 SINE B2 -96 120 72 1 1122 634 298 68 26 chr9 70444207 70444387 -53631785 - B4 SINE B4 -6 286 98 1 1122 841 201 160 160 chr9 70444387 70444729 -53631443 - ORR1D1 LTR MaLR 0 374 32 1 1122 1382 68 17 0 chr9 70444729 70444906 -53631266 - B2_Mm2 SINE B2 -14 181 2 1 1122 841 201 160 160 chr9 70444906 70444937 -53631235 - ORR1D1 LTR MaLR -343 31 1 1 1122 634 298 68 26 chr9 70444937 70444990 -53631182 - B4 SINE B4 -195 97 45 1 1122 787 124 0 24 chr9 70445015 70445139 -53631033 - B1_Mur3 SINE Alu 0 149 29 1 1122 27 49 0 0 chr9 70445165 70445206 -53630966 + AT_rich Low_complexity Low_complexity 1 41 0 1 1122 400 184 403 22 chr9 70445352 70445491 -53630681 - B3A SINE B2 -5 193 2 1 1122 324 269 131 21 chr9 70445627 70445897 -53630275 - L1ME2 LINE L1 -335 5844 5546 1 1122 308 290 46 18 chr9 70446045 70446154 -53630018 - MER74C LTR ERVL -154 306 195 1 1122 399 291 0 26 chr9 70446300 70446413 -53629759 - PB1D7 SINE Alu -1 119 10 1 1122 221 211 205 26 chr9 70446526 70446604 -53629568 + RSINE1 SINE B4 13 104 -61 1 1122 198 0 0 0 chr9 70446612 70446634 -53629538 + (CCTG)n Simple_repeat Simple_repeat 2 23 0 1 1122 22 35 0 0 chr9 70446846 70446875 -53629297 + AT_rich Low_complexity Low_complexity 1 29 0 1 1122 317 274 97 10 chr9 70449202 70449305 -53626867 - PB1D10 SINE Alu -1 116 5 1 1122 341 321 35 9 chr9 70449555 70449668 -53626504 + B1F SINE Alu 1 116 -33 1 1122 582 86 0 0 chr9 70449988 70450069 -53626103 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1122 320 254 15 15 chr9 70450217 70450285 -53625887 - ID4 SINE ID -11 72 5 1 1122 25 65 0 0 chr9 70452356 70452402 -53623770 + AT_rich Low_complexity Low_complexity 1 46 0 1 1122 443 247 62 89 chr9 70453240 70453496 -53622676 + MTEb LTR MaLR 81 346 -33 1 1122 21 36 0 0 chr9 70453570 70453598 -53622574 + AT_rich Low_complexity Low_complexity 1 28 0 1 1122 802 214 120 27 chr9 70453891 70454150 -53622022 - B4A SINE B4 -8 284 2 1 1122 420 77 0 0 chr9 70454749 70454814 -53621358 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1122 405 0 0 0 chr9 70454866 70454911 -53621261 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1122 949 187 12 0 chr9 70454951 70455117 -53621055 + B3 SINE B2 48 215 -1 1 1122 793 174 28 7 chr9 70455595 70455740 -53620432 - B1_Mus1 SINE Alu 0 148 1 1 1122 268 214 308 22 chr9 70456140 70456231 -53619941 - PB1D10 SINE Alu 0 117 1 1 1122 555 308 0 0 chr9 70456278 70456408 -53619764 - B1F1 SINE Alu -7 142 13 1 1122 397 286 67 0 chr9 70456448 70456553 -53619619 - PB1D7 SINE Alu -8 112 1 1 1122 296 243 25 75 chr9 70456573 70456653 -53619519 - RSINE1 SINE B4 0 165 90 1 1122 866 314 31 16 chr9 70456675 70456931 -53619241 - B4A SINE B4 0 292 33 1 1122 644 276 105 0 chr9 70456916 70457068 -53619104 - B4 SINE B4 -124 168 1 1 1122 657 208 8 8 chr9 70457262 70457388 -53618784 + B1_Mus2 SINE Alu 22 147 0 1 1122 406 112 162 5 chr9 70457491 70457598 -53618574 - B2_Mm2 SINE B2 -6 189 48 1 1122 1077 98 92 0 chr9 70457629 70457792 -53618380 - B2_Mm1t SINE B2 -14 179 2 1 1122 428 319 44 7 chr9 70457794 70457930 -53618242 + RSINE1 SINE B4 23 163 -2 1 1122 272 387 83 6 chr9 70457961 70458130 -53618042 + L2 LINE L2 2736 2917 -502 1 1122 357 189 62 20 chr9 70458270 70458369 -53617803 - PB1 SINE Alu -10 117 29 1 1122 603 242 8 0 chr9 70458403 70458535 -53617637 + B1_Mus1 SINE Alu 1 133 -15 1 1122 183 162 0 0 chr9 70458541 70458578 -53617594 + GA-rich Low_complexity Low_complexity 2 38 0 1 1122 474 228 108 24 chr9 70459234 70459400 -53616772 - B3A SINE B2 -18 180 1 1 1122 345 195 195 0 chr9 70459619 70459706 -53616466 - PB1D9 SINE Alu -16 104 1 1 1122 561 164 106 0 chr9 70460096 70460200 -53615972 + PB1D9 SINE Alu 5 119 -1 1 1122 212 171 0 0 chr9 70460203 70460244 -53615928 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 1 1122 370 298 161 0 chr9 70460360 70460484 -53615688 + RSINE1 SINE B4 3 146 -19 1 1122 624 210 72 7 chr9 70460667 70460806 -53615366 + B1_Mur2 SINE Alu 2 149 0 1 1122 288 0 26 0 chr9 70460883 70460922 -53615250 - B1_Mm SINE Alu 0 147 108 1 1122 282 56 0 0 chr9 70461008 70461044 -53615128 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1122 331 156 62 0 chr9 70461055 70461119 -53615053 - B3 SINE B2 -145 71 4 1 1122 775 190 42 7 chr9 70461588 70461731 -53614441 - B1_Mur1 SINE Alu -1 148 1 1 1122 306 88 103 0 chr9 70462270 70462338 -53613834 + GA-rich Low_complexity Low_complexity 2 76 0 1 1122 237 281 18 0 chr9 70463368 70463425 -53612747 + ID4_ SINE ID 2 59 -24 1 1122 301 336 30 69 chr9 70463441 70463572 -53612600 - MER5B DNA MER1_type -51 127 2 1 1122 204 370 39 20 chr9 70463586 70463688 -53612484 - L2c LINE L2 -230 3157 3054 1 1122 251 239 86 36 chr9 70464009 70464113 -53612059 - PB1D10 SINE Alu -14 103 1 1 1122 238 330 136 0 chr9 70464233 70464336 -53611836 + PB1D10 SINE Alu 1 117 0 1 1122 404 162 0 0 chr9 70465064 70465132 -53611040 + B1_Mur4 SINE Alu 60 127 -23 1 1122 244 222 37 0 chr9 70465133 70465214 -53610958 + (CAGAGA)n Simple_repeat Simple_repeat 4 87 0 1 1122 275 343 38 0 chr9 70465706 70465811 -53610361 - MIR3 SINE MIR -48 160 52 1 1122 434 252 0 87 chr9 70466094 70466220 -53609952 + PB1D9 SINE Alu 6 120 0 1 1122 25 0 0 0 chr9 70466323 70466348 -53609824 + AT_rich Low_complexity Low_complexity 1 25 0 1 1122 211 260 0 107 chr9 70466349 70466405 -53609767 - ID SINE ID -152 72 23 1 1122 597 258 111 51 chr9 70466425 70466858 -53609314 + L1MC4 LINE L1 7112 7570 -472 1 1122 858 208 6 0 chr9 70466947 70467106 -53609066 + B3A SINE B2 1 160 -38 1 1122 522 0 0 0 chr9 70467111 70467169 -53609003 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1122 1633 292 34 84 chr9 70467184 70467477 -53608695 - Lx7 LINE L1 -518 7178 6896 1 1122 237 98 0 0 chr9 70467477 70467518 -53608654 + (CTAA)n Simple_repeat Simple_repeat 2 42 0 1 1122 288 0 0 0 chr9 70467521 70467553 -53608619 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1122 1633 292 34 84 chr9 70467553 70467770 -53608402 - Lx7 LINE L1 -801 6895 6687 1 1122 1387 76 16 0 chr9 70467770 70467955 -53608217 + B2_Mm2 SINE B2 1 188 -7 1 1122 1633 292 34 84 chr9 70467955 70468228 -53607944 - Lx7 LINE L1 -1010 6686 6433 1 1122 410 231 49 8 chr9 70468236 70468358 -53607814 + Lx7 LINE L1 7209 7335 -361 1 1122 2125 157 75 3 chr9 70468472 70468843 -53607329 + Lx5 LINE L1 6646 7043 -7 1 1122 886 118 55 66 chr9 70469046 70469228 -53606944 + B2_Mm2 SINE B2 2 181 -14 1 1122 6965 35 0 0 chr9 70469230 70470052 -53606120 - L1Md_T LINE L1 0 6582 5761 1 1122 21 0 0 0 chr9 70470400 70470421 -53605751 + AT_rich Low_complexity Low_complexity 1 21 0 1 1122 1439 44 4 3 chr9 70470735 70471446 -53604726 + (CTGTG)n Simple_repeat Simple_repeat 1 711 0 1 1122 249 33 0 0 chr9 70472326 70472356 -53603816 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1122 442 267 11 134 chr9 70472357 70472543 -53603629 - RSINE1 SINE B4 0 165 3 1 1122 375 310 0 65 chr9 70472710 70472848 -53603324 - B1F SINE Alu -19 130 2 1 1122 1666 31 0 0 chr9 70473031 70473223 -53602949 + B2_Mm1t SINE B2 2 193 0 1 1122 439 223 294 27 chr9 70473355 70473576 -53602596 - B4A SINE B4 -9 283 4 1 1122 884 158 14 14 chr9 70473587 70473735 -53602437 - B1_Mur2 SINE Alu 0 149 2 1 1122 921 236 34 5 chr9 70474948 70475157 -53601015 + B3 SINE B2 2 216 0 1 1122 243 0 0 0 chr9 70475295 70475322 -53600850 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1122 1575 36 0 30 chr9 70475843 70476042 -53600130 - B2_Mm1a SINE B2 0 193 1 1 1122 287 273 61 61 chr9 70476122 70476270 -53599902 - YREP_Mm Unknown Unknown -1483 329 182 1 1122 704 175 0 8 chr9 70476150 70476271 -53599901 + ID_B1 SINE B4 103 222 -2 1 1122 1466 59 16 0 chr9 70476306 70476492 -53599680 + B2_Mm2 SINE B2 2 190 -5 1 1122 681 204 14 34 chr9 70476561 70476708 -53599464 - B1_Mur2 SINE Alu -1 148 5 1 1122 240 307 185 59 chr9 70477296 70477583 -53598589 - L2c LINE L2 -16 3410 3088 1 1122 423 204 55 55 chr9 70477789 70477940 -53598232 + B1F SINE Alu 2 149 0 1 1122 44 35 0 0 chr9 70478163 70478221 -53597951 + AT_rich Low_complexity Low_complexity 1 58 0 1 1122 193 145 32 0 chr9 70478242 70478304 -53597868 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 1 1122 259 222 6 60 chr9 70478309 70478491 -53597681 + (TAA)n Simple_repeat Simple_repeat 3 174 0 1 1122 35 63 0 0 chr9 70478530 70478593 -53597579 + AT_rich Low_complexity Low_complexity 1 63 0 1 1122 609 221 8 14 chr9 70478604 70478772 -53597400 - B3 SINE B2 -13 203 1 1 1122 362 274 176 0 chr9 70479013 70479115 -53597057 + PB1 SINE Alu 1 120 -7 1 1122 195 69 0 0 chr9 70479115 70479144 -53597028 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 1 1122 247 298 0 0 chr9 70479218 70479265 -53596907 - ID SINE ID -146 78 32 1 1122 22 35 0 0 chr9 70479488 70479517 -53596655 + AT_rich Low_complexity Low_complexity 1 29 0 1 1122 21 0 0 0 chr9 70479979 70480000 -53596172 + AT_rich Low_complexity Low_complexity 1 21 0 1 1122 279 271 35 12 chr9 70480258 70480344 -53595828 + Charlie15a DNA MER1_type 137 224 0 1 1122 598 143 0 0 chr9 70480671 70480762 -53595410 + B1_Mur1 SINE Alu 52 142 -7 1 1122 192 40 0 0 chr9 70480763 70480788 -53595384 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 1122 401 102 34 0 chr9 70480852 70480911 -53595261 - B1_Mur1 SINE Alu -10 139 79 1 1122 554 163 0 0 chr9 70481034 70481120 -53595052 + B1_Mus2 SINE Alu 24 109 -38 1 1122 248 317 0 0 chr9 70481357 70481417 -53594755 + BC1_Mm scRNA scRNA 22 81 -71 1 1122 494 213 55 28 chr9 70481589 70481734 -53594438 + MER58C DNA MER1_type 56 204 -11 1 1122 27 29 0 0 chr9 70481921 70481955 -53594217 + AT_rich Low_complexity Low_complexity 1 34 0 1 1122 1286 51 0 0 chr9 70481956 70482113 -53594059 - B2_Mm2 SINE B2 -38 157 1 1 1122 41 21 0 0 chr9 70482124 70482172 -53594000 + AT_rich Low_complexity Low_complexity 1 48 0 1 1122 278 289 22 26 chr9 70482193 70482396 -53593776 - MMSAT4 Satellite Satellite 0 202 1 1 1122 230 335 41 20 chr9 70482291 70482486 -53593686 - MurSatRep1 Unknown Unknown -191 1946 1748 1 1122 409 238 0 12 chr9 70482744 70482825 -53593347 - ID4_ SINE ID -3 80 1 1 1122 845 228 45 25 chr9 70482848 70483046 -53593126 - B3 SINE B2 -13 203 2 1 1122 433 290 0 45 chr9 70483058 70483170 -53593002 - PB1D10 SINE Alu -10 107 1 1 1122 186 43 0 0 chr9 70483399 70483422 -53592750 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1122 519 17 0 0 chr9 70483422 70483482 -53592690 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1122 661 206 114 19 chr9 70483489 70483647 -53592525 - B3 SINE B2 -4 212 40 1 1122 311 65 0 21 chr9 70483647 70483694 -53592478 + (TCTCCC)n Simple_repeat Simple_repeat 3 48 0 1 1122 456 269 0 28 chr9 70483696 70483803 -53592369 - PB1D9 SINE Alu -16 104 1 1 1122 256 309 15 0 chr9 70483826 70483894 -53592278 - ID4_ SINE ID -3 80 12 1 1122 575 252 33 7 chr9 70484026 70484053 -53592119 - RSINE1 SINE B4 -7 158 128 1 1122 306 0 0 0 chr9 70484053 70484087 -53592085 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1122 575 252 33 7 chr9 70484087 70484211 -53591961 - RSINE1 SINE B4 -38 127 3 1 1122 901 107 14 7 chr9 70484636 70484777 -53591395 - URR1A DNA MER1_type 0 226 85 1 1122 1583 32 5 0 chr9 70485161 70485350 -53590822 + B2_Mm1t SINE B2 2 191 -2 1 1122 437 208 115 0 chr9 70485418 70485514 -53590658 - PB1D10 SINE Alu -8 109 3 1 1122 567 324 162 85 chr9 70485517 70485942 -53590230 + MLT1F2 LTR MaLR 100 557 -3 1 1122 841 235 72 11 chr9 70486869 70487020 -53589152 + B3A SINE B2 4 159 -39 1 1122 486 0 0 0 chr9 70487020 70487074 -53589098 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1122 841 235 72 11 chr9 70487074 70487103 -53589069 + B3A SINE B2 160 195 -3 1 1122 685 290 71 0 chr9 70487111 70487280 -53588892 - B3A SINE B2 -15 183 3 1 1122 400 292 9 0 chr9 70487290 70487396 -53588776 - PB1D10 SINE Alu -8 109 3 1 1122 815 278 31 42 chr9 70487411 70487700 -53588472 - B4 SINE B4 -2 290 5 1 1122 22 35 0 0 chr9 70487803 70487832 -53588340 + AT_rich Low_complexity Low_complexity 1 29 0 1 1122 420 37 0 0 chr9 70487996 70488050 -53588122 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1122 407 147 67 0 chr9 70488343 70488418 -53587754 + B3 SINE B2 1 80 -136 1 1122 213 121 0 0 chr9 70488445 70488478 -53587694 + (TCCC)n Simple_repeat Simple_repeat 1 33 0 1 1122 220 283 0 19 chr9 70488478 70488491 -53587681 + polypyrimidine Low_complexity Low_complexity 44 56 0 1 1122 995 108 22 11 chr9 70488491 70488669 -53587503 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1122 220 283 0 19 chr9 70488669 70488709 -53587463 + polypyrimidine Low_complexity Low_complexity 4 43 0 1 1122 603 195 141 0 chr9 70488709 70488837 -53587335 - B1_Mm SINE Alu -1 146 1 1 1122 712 254 6 50 chr9 70488861 70489043 -53587129 - B3A SINE B2 0 198 25 1 1122 185 322 30 126 chr9 70489151 70489318 -53586854 + L2 LINE L2 2817 2967 -452 1 1122 354 45 0 0 chr9 70489479 70489523 -53586649 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1122 4497 108 38 22 chr9 70489568 70490303 -53585869 + MurERV4_19-int LTR ERVK 2439 3185 -2595 1 1122 1794 148 3 65 chr9 70490303 70490627 -53585545 + RLTR11A2 LTR ERVK 216 519 -8 1 1122 564 162 0 0 chr9 70490631 70490736 -53585436 + CT-rich Low_complexity Low_complexity 1 105 0 1 1122 360 0 0 0 chr9 70490791 70490831 -53585341 + (CCTA)n Simple_repeat Simple_repeat 4 43 0 1 1122 483 254 3 14 chr9 70490845 70490963 -53585209 - PB1D7 SINE Alu -23 126 10 1 1122 564 209 88 22 chr9 70491108 70491245 -53584927 - B1_Mus2 SINE Alu -1 146 1 1 1122 264 127 0 0 chr9 70491272 70491327 -53584845 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 1 1122 435 248 127 9 chr9 70491360 70491470 -53584702 - B3 SINE B2 -92 124 2 1 1122 782 294 121 5 chr9 70491470 70491675 -53584497 - B4A SINE B4 -59 233 4 1 1122 25 0 0 0 chr9 70491686 70491711 -53584461 + AT_rich Low_complexity Low_complexity 1 25 0 1 1122 737 252 69 0 chr9 70491877 70492079 -53584093 - B3 SINE B2 0 216 1 1 1122 227 328 0 0 chr9 70492286 70492350 -53583822 - ID4 SINE ID -18 65 2 1 1122 204 233 31 62 chr9 70492833 70492929 -53583243 + (CATA)n Simple_repeat Simple_repeat 4 96 0 1 1122 408 232 135 10 chr9 70492947 70493043 -53583129 + PB1D7 SINE Alu 12 119 -1 1 1122 342 0 0 0 chr9 70493205 70493243 -53582929 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1122 198 0 0 0 chr9 70493243 70493264 -53582908 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1122 26 0 0 0 chr9 70493667 70493693 -53582479 + AT_rich Low_complexity Low_complexity 1 26 0 1 1122 231 36 0 0 chr9 70493807 70493835 -53582337 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1122 451 229 81 30 chr9 70493857 70493956 -53582216 + ID_B1 SINE B4 101 204 -20 1 1122 425 291 137 0 chr9 70494531 70494648 -53581524 + B3 SINE B2 71 203 -13 1 1122 1080 89 7 0 chr9 70494685 70494831 -53581341 + B1_Mus1 SINE Alu 1 147 -1 1 1122 22 56 0 0 chr9 70495315 70495351 -53580821 + AT_rich Low_complexity Low_complexity 1 36 0 1 1122 537 272 58 94 chr9 70495351 70495542 -53580630 - B3A SINE B2 -10 185 2 1 1122 1098 220 9 5 chr9 70495774 70495989 -53580183 - B3 SINE B2 0 216 1 1 1122 180 111 0 0 chr9 70496190 70496217 -53579955 + (TCC)n Simple_repeat Simple_repeat 2 28 0 1 1122 692 226 30 0 chr9 70496224 70496357 -53579815 - B1_Mur1 SINE Alu -9 140 4 1 1122 765 270 0 0 chr9 70496411 70496574 -53579598 - RSINE1 SINE B4 0 165 3 1 1122 235 284 13 26 chr9 70496740 70496816 -53579356 + RSINE1 SINE B4 91 165 0 1 1122 610 259 7 0 chr9 70497280 70497415 -53578757 + B1_Mur1 SINE Alu 13 148 -1 1 1122 723 174 37 29 chr9 70497502 70497638 -53578534 - B1_Mur4 SINE Alu -13 137 1 1 1122 227 270 0 51 chr9 70497707 70497785 -53578387 - B3A SINE B2 -10 188 115 1 1122 707 249 101 60 chr9 70497729 70497977 -53578195 - B4A SINE B4 0 292 35 1 1122 327 49 0 0 chr9 70498381 70498422 -53577750 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1122 246 320 13 0 chr9 70498448 70498526 -53577646 - Charlie12 DNA MER1_type -2771 102 24 1 1122 1292 231 138 52 chr9 70498639 70499046 -53577126 + RMER5 LTR ERV1 43 484 -50 1 1122 980 223 39 5 chr9 70499202 70499409 -53576763 + B3 SINE B2 2 215 -1 1 1122 646 236 174 0 chr9 70499433 70499594 -53576578 + B3 SINE B2 3 191 -25 1 1122 319 222 167 29 chr9 70499671 70499773 -53576399 + PB1D10 SINE Alu 1 116 -1 1 1122 865 257 48 0 chr9 70500607 70500794 -53575378 + B3 SINE B2 6 201 -15 1 1122 791 245 40 54 chr9 70500868 70501092 -53575080 + ID_B1 SINE B4 2 222 -2 2 1122 679 201 142 86 chr9 70501258 70501525 -53574647 + B4A SINE B4 1 282 -10 3 1122 255 125 0 0 chr9 70501598 70501638 -53574534 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1122 315 104 0 0 chr9 70501775 70501823 -53574349 - Charlie1b DNA MER1_type -410 113 66 5 1122 1402 166 57 0 chr9 70502449 70502696 -53573476 + MTEa LTR MaLR 114 374 -5 6 1122 855 196 0 0 chr9 70502701 70502849 -53573323 + MTEa-int LTR MaLR 1 148 -1432 6 1122 407 156 0 0 chr9 70502911 70502975 -53573197 + MTEa-int LTR MaLR 1171 1234 -346 6 1122 351 304 182 39 chr9 70503802 70503837 -53572335 + ID_B1 SINE B4 49 224 0 7 1122 493 293 0 25 chr9 70503837 70503956 -53572216 + PB1D10 SINE Alu 2 117 0 8 1122 21 36 0 0 chr9 70504695 70504723 -53571449 + GC_rich Low_complexity Low_complexity 1 28 0 9 1122 25 51 0 0 chr9 70504986 70505025 -53571147 + GC_rich Low_complexity Low_complexity 1 39 0 1 1122 192 77 0 0 chr9 70505389 70505415 -53570757 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1122 208 147 0 0 chr9 70505816 70505850 -53570322 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1122 372 104 0 0 chr9 70505898 70505965 -53570207 + (T)n Simple_repeat Simple_repeat 1 67 0 1 1122 336 48 0 0 chr9 70506298 70506340 -53569832 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1122 412 239 6 173 chr9 70506412 70506574 -53569598 - B1F SINE Alu 0 149 15 1 1122 1200 94 0 0 chr9 70506605 70506817 -53569355 + (TTTC)n Simple_repeat Simple_repeat 1 212 0 1 1122 734 226 7 0 chr9 70506819 70506956 -53569216 - B1_Mur1 SINE Alu -10 139 2 1 1122 17742 75 26 4 chr9 70507084 70508817 -53567355 - L1_Mus3 LINE L1 0 6638 4850 1 1122 444 19 0 0 chr9 70508817 70508870 -53567302 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1122 1208 48 7 0 chr9 70508872 70509018 -53567154 - B1_Mus2 SINE Alu 0 147 1 2 1122 17742 112 9 8 chr9 70509018 70510841 -53565331 - L1_Mus3 LINE L1 -1034 4849 3042 1 1122 861 157 0 35 chr9 70511142 70511287 -53564885 + B1_Mus1 SINE Alu 2 141 -7 2 1122 1049 231 10 0 chr9 70511331 70511534 -53564638 - B3 SINE B2 0 216 12 2 1122 1104 84 0 0 chr9 70511544 70511687 -53564485 + B1_Mm SINE Alu 5 147 0 2 1122 236 146 62 0 chr9 70511826 70511874 -53564298 + B4 SINE B4 2 52 -240 2 1122 653 170 0 0 chr9 70511901 70512007 -53564165 + B1_Mur1 SINE Alu 44 149 0 2 1122 22 0 0 0 chr9 70512340 70512362 -53563810 + AT_rich Low_complexity Low_complexity 1 22 0 2 1122 340 286 51 43 chr9 70512392 70512509 -53563663 - PB1D7 SINE Alu -2 118 1 2 1122 253 317 15 0 chr9 70512519 70512604 -53563568 - ID4_ SINE ID -63 89 3 2 1122 318 264 42 0 chr9 70512634 70512706 -53563466 - B1F SINE Alu -60 89 15 2 1122 591 309 144 26 chr9 70512746 70513128 -53563044 - MT2A LTR ERVL -105 428 2 3 1122 226 352 17 61 chr9 70513265 70513380 -53562792 - LTR88c LTR Genie? -77 785 676 3 1122 239 266 30 30 chr9 70513746 70513812 -53562360 + ID4_ SINE ID 2 67 -16 3 1122 287 329 0 12 chr9 70513880 70513960 -53562212 + MER5A DNA MER1_type 1 79 -110 3 1122 288 0 0 0 chr9 70514008 70514040 -53562132 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1122 215 173 96 0 chr9 70514083 70514135 -53562037 + MER5A DNA MER1_type 133 189 0 3 1122 730 259 80 0 chr9 70514138 70514339 -53561833 + ID_B1 SINE B4 5 221 -3 3 1122 213 130 18 53 chr9 70514502 70514559 -53561613 + A-rich Low_complexity Low_complexity 1 55 0 3 1122 203 370 14 0 chr9 70514689 70514762 -53561410 - MER5A DNA MER1_type -60 129 56 3 1122 1213 109 11 11 chr9 70514892 70515077 -53561095 + B2_Mm1t SINE B2 2 186 -7 3 1122 965 188 108 0 chr9 70515091 70515277 -53560895 + B3 SINE B2 2 207 -9 3 1122 221 344 66 24 chr9 70515434 70515581 -53560591 + MIR SINE MIR 5 159 -117 4 1122 256 189 27 0 chr9 70515581 70515655 -53560517 + GA-rich Low_complexity Low_complexity 4 79 0 4 1122 779 254 97 10 chr9 70515665 70515860 -53560312 + ID_B1 SINE B4 1 212 -12 4 1122 231 36 0 0 chr9 70515924 70515952 -53560220 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1122 839 225 30 55 chr9 70515973 70516175 -53559997 - B3A SINE B2 0 198 2 4 1122 226 319 53 42 chr9 70516248 70516268 -53559904 - B3A SINE B2 -101 97 2 4 1122 321 347 0 0 chr9 70516268 70516343 -53559829 - ID4 SINE ID -7 76 2 4 1122 420 20 0 0 chr9 70516348 70516397 -53559775 + (TTA)n Simple_repeat Simple_repeat 3 51 0 4 1122 192 40 0 0 chr9 70516507 70516532 -53559640 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1122 1132 66 0 0 chr9 70516532 70516669 -53559503 - B1_Mm SINE Alu -8 139 3 4 140 237 339 7 110 chr9 70516683 70516819 -53559353 + MT2B LTR ERVL 136 257 -344 5 140 668 272 0 0 chr9 70516716 70516852 -53559320 + ID_B1 SINE B4 80 215 -9 5 1123 267 315 52 39 chr9 70516741 70516896 -53559276 - YREP_Mm Unknown Unknown -1519 293 137 5 1123 180 77 0 0 chr9 70517049 70517075 -53559097 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1123 648 249 109 47 chr9 70517117 70517280 -53558892 + B4A SINE B4 1 247 -45 5 1123 428 302 16 41 chr9 70517280 70517401 -53558771 + B3A SINE B2 1 118 -80 5 1123 648 249 109 47 chr9 70517401 70517415 -53558757 + B4A SINE B4 248 271 -21 5 1123 271 250 16 0 chr9 70517437 70517501 -53558671 + B4A SINE B4 217 281 -11 5 1123 348 0 19 37 chr9 70517508 70517562 -53558610 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 5 1123 331 217 94 94 chr9 70517951 70518068 -53558104 - PB1D9 SINE Alu 0 120 4 5 1123 500 323 53 0 chr9 70518152 70518285 -53557887 + RSINE1 SINE B4 1 140 -25 5 1123 306 0 0 0 chr9 70518295 70518329 -53557843 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1123 949 168 0 0 chr9 70518751 70518900 -53557272 - B1_Mur4 SINE Alu 0 150 2 6 1123 324 0 0 0 chr9 70519052 70519088 -53557084 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1123 1647 198 72 11 chr9 70519123 70519470 -53556702 - MTEa LTR MaLR -11 368 1 6 1123 239 282 67 45 chr9 70519481 70519570 -53556602 + MIRb SINE MIR 132 222 -46 6 1123 447 35 0 0 chr9 70520565 70520622 -53555550 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1123 1217 228 92 13 chr9 70520905 70521266 -53554906 - MTD LTR MaLR -9 410 1 6 1123 209 313 45 0 chr9 70521718 70521785 -53554387 + MIRc SINE MIR 66 135 -133 6 1123 249 297 94 0 chr9 70521856 70521920 -53554252 - ID4_ SINE ID -9 74 5 6 1123 1321 75 6 0 chr9 70522224 70522398 -53553774 - B2_Mm1t SINE B2 -18 175 1 6 1123 936 126 35 0 chr9 70522426 70522569 -53553603 - B1_Mus1 SINE Alu 0 148 1 7 1123 267 289 56 0 chr9 70522571 70522661 -53553511 - MIR SINE MIR -56 206 112 7 1123 1182 193 19 0 chr9 70522684 70522896 -53553276 - B3 SINE B2 0 216 1 7 1123 1458 73 16 0 chr9 70523136 70523327 -53552845 + B2_Mm2 SINE B2 2 195 0 7 1123 1034 183 29 9 chr9 70523881 70524091 -53552081 - B3 SINE B2 0 216 3 7 1123 253 333 40 0 chr9 70524196 70524271 -53551901 + ID SINE ID 2 79 -145 7 1123 341 295 41 21 chr9 70524576 70524673 -53551499 + RSINE1 SINE B4 43 141 -24 7 1123 240 86 0 0 chr9 70524684 70524719 -53551453 + (TCTCCC)n Simple_repeat Simple_repeat 1 35 0 7 1123 388 299 92 61 chr9 70524829 70525025 -53551147 - MIR SINE MIR -21 241 40 7 1123 249 303 0 62 chr9 70525621 70525702 -53550470 + ID_B1 SINE B4 128 203 -21 7 1123 380 180 56 0 chr9 70525917 70526006 -53550166 - Lx5 LINE L1 0 7050 6957 7 1123 189 0 0 0 chr9 70526158 70526179 -53549993 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 8 1123 205 189 0 70 chr9 70526784 70526841 -53549331 + GA-rich Low_complexity Low_complexity 3 55 0 8 1123 23 54 0 0 chr9 70527225 70527262 -53548910 + GC_rich Low_complexity Low_complexity 1 37 0 8 1123 191 114 23 0 chr9 70527600 70527644 -53548528 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 8 1123 267 175 85 78 chr9 70528771 70528842 -53547330 + ID2 SINE ID 1 75 -77 8 1123 608 269 25 43 chr9 70529369 70529532 -53546640 + RSINE1 SINE B4 6 165 0 8 1123 223 328 70 53 chr9 70529532 70529556 -53546616 + B3A SINE B2 5 194 -4 8 1123 207 0 0 0 chr9 70529620 70529643 -53546529 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1123 409 240 20 110 chr9 70529717 70529778 -53546394 + MT2B LTR ERVL 112 156 -428 8 1123 654 146 0 0 chr9 70529778 70529881 -53546291 + B1_Mus1 SINE Alu 3 105 -43 8 1123 192 40 0 0 chr9 70530635 70530660 -53545512 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1123 242 192 206 29 chr9 70530756 70530858 -53545314 - PB1D7 SINE Alu 0 120 1 9 1123 338 333 57 0 chr9 70530959 70531064 -53545108 - PB1D10 SINE Alu -6 111 1 9 1123 277 111 44 0 chr9 70531084 70531129 -53545043 - MurSatRep1 Unknown Unknown -1856 281 235 9 1123 835 129 16 8 chr9 70531129 70531254 -53544918 + B1_Mur2 SINE Alu 23 148 -1 9 1123 918 196 145 0 chr9 70531332 70531511 -53544661 - B3 SINE B2 -11 205 1 9 1123 473 305 30 0 chr9 70531611 70531742 -53544430 - B1F1 SINE Alu -13 136 2 9 1123 1534 53 0 5 chr9 70532143 70532334 -53543838 - B2_Mm2 SINE B2 -3 192 3 9 1123 233 321 63 13 chr9 70532583 70532662 -53543510 - ID4_ SINE ID 0 83 1 9 1123 222 268 53 68 chr9 70532678 70532810 -53543362 - B2_Mm2 SINE B2 -11 184 55 9 1123 329 310 140 0 chr9 70532722 70532822 -53543350 - RSINE1 SINE B4 -8 157 44 1 1123 443 260 15 5 chr9 70532839 70532963 -53543209 - B1F SINE Alu -8 141 23 1 1123 227 274 177 0 chr9 70533011 70533073 -53543099 - ID4_ SINE ID -9 74 2 1 1123 235 276 192 26 chr9 70533156 70533234 -53542938 - PB1 SINE Alu -29 98 8 1 1123 420 320 68 0 chr9 70533405 70533552 -53542620 + Helitron3Na_Mam RC Helitron 267 423 -63 1 1123 433 291 109 0 chr9 70533647 70533757 -53542415 + RSINE1 SINE B4 2 123 -42 1 1123 21 0 0 0 chr9 70533841 70533862 -53542310 + AT_rich Low_complexity Low_complexity 1 21 0 1 1123 759 330 24 44 chr9 70533872 70534170 -53542002 - B4A SINE B4 0 292 1 1 1123 665 250 18 64 chr9 70535059 70535230 -53540942 + RSINE1 SINE B4 3 165 0 1 1123 1155 212 11 6 chr9 70535612 70535832 -53540340 - B3 SINE B2 -5 211 1 1 1123 562 220 105 0 chr9 70535994 70536194 -53539978 + L1MA4 LINE L1 5716 5936 -364 1 1123 225 346 0 96 chr9 70536240 70536355 -53539817 - B1_Mur4 SINE Alu -25 125 22 1 1123 492 288 182 34 chr9 70536252 70536428 -53539744 - B4A SINE B4 -89 203 2 1 1123 252 0 0 0 chr9 70536554 70536582 -53539590 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1123 262 275 176 56 chr9 70536582 70536690 -53539482 + RSINE1 SINE B4 44 164 -1 1 1123 21 57 0 0 chr9 70538229 70538264 -53537908 + AT_rich Low_complexity Low_complexity 1 35 0 1 1123 1221 213 42 49 chr9 70538860 70539146 -53537026 + MTEb LTR MaLR 5 288 -91 1 1123 253 233 32 32 chr9 70539484 70539546 -53536626 - ID4_ SINE ID -3 80 19 1 1123 285 338 0 7 chr9 70540167 70540267 -53535905 - ID4 SINE ID -56 96 1 1 1123 233 306 28 0 chr9 70540586 70540658 -53535514 - ID4 SINE ID -7 76 3 1 1123 849 261 39 10 chr9 70540837 70541042 -53535130 - B3 SINE B2 -5 211 1 1 1123 219 304 89 63 chr9 70541214 70541372 -53534800 - MIR SINE MIR 0 262 101 1 1123 710 236 21 0 chr9 70541674 70541814 -53534358 - B1F2 SINE Alu 0 149 7 1 1123 550 259 18 76 chr9 70541814 70541845 -53534327 - ID_B1 SINE B4 0 224 64 1 1123 648 167 0 77 chr9 70542289 70542419 -53533753 - B1_Mur3 SINE Alu -2 147 28 1 1123 301 211 13 26 chr9 70542687 70542765 -53533407 + ID4_ SINE ID 3 79 -4 1 1123 221 312 106 6 chr9 70543817 70543978 -53532194 + MIR SINE MIR 86 262 0 1 1123 358 311 111 51 chr9 70544045 70544292 -53531880 + MTE2b LTR MaLR 85 349 -30 1 1123 29 47 0 0 chr9 70544367 70544410 -53531762 + AT_rich Low_complexity Low_complexity 1 43 0 1 1123 498 319 14 0 chr9 70544434 70544575 -53531597 - RSINE1 SINE B4 -19 146 4 1 1123 186 43 0 0 chr9 70545397 70545420 -53530752 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1123 306 0 0 0 chr9 70545431 70545465 -53530707 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1 1123 1241 75 0 0 chr9 70545465 70545625 -53530547 - B2_Mm2 SINE B2 -34 161 2 1 1123 30 0 0 0 chr9 70545629 70545659 -53530513 + AT_rich Low_complexity Low_complexity 1 30 0 1 1123 991 226 5 19 chr9 70545675 70545887 -53530285 - B3 SINE B2 -6 210 2 1 1123 269 95 0 87 chr9 70546043 70546089 -53530083 - B1F SINE Alu -86 63 22 1 1123 272 93 0 0 chr9 70546055 70546094 -53530078 - PB1D7 SINE Alu -62 55 17 1 1123 221 296 71 47 chr9 70546094 70546140 -53530032 - ID_B1 SINE B4 -88 136 50 1 1123 442 315 38 124 chr9 70546422 70546712 -53529460 - ORR1E LTR MaLR -7 352 88 1 1123 239 276 215 23 chr9 70546756 70546886 -53529286 - MLT2B3 LTR ERVL -399 155 1 1 1123 348 283 92 23 chr9 70547329 70547345 -53528827 - L1MEc LINE L1 -4568 1832 1815 1 1123 729 214 153 6 chr9 70547345 70547528 -53528644 - B3 SINE B2 -6 210 1 1 1123 348 283 92 23 chr9 70547528 70547641 -53528531 - L1MEc LINE L1 -4586 1814 1694 1 1123 287 307 34 0 chr9 70547894 70547982 -53528190 + (CATA)n Simple_repeat Simple_repeat 3 93 0 1 1123 645 153 130 0 chr9 70547990 70548121 -53528051 - B1_Mus1 SINE Alu 0 148 1 1 1123 268 282 50 97 chr9 70548303 70548562 -53527610 - L1MEc LINE L1 -5629 771 525 1 1123 702 234 20 27 chr9 70548572 70548721 -53527451 + B1_Mur2 SINE Alu 2 149 0 1 1123 232 292 17 34 chr9 70549057 70549174 -53526998 - L1MC4 LINE L1 -139 7903 7789 1 1123 744 27 4 354 chr9 70549448 70549674 -53526498 + B1_Mus1 SINE Alu 2 148 0 1 1123 189 107 0 0 chr9 70549674 70549702 -53526470 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 1 1123 317 217 43 0 chr9 70549730 70549799 -53526373 + ID4 SINE ID 8 79 -4 1 1123 309 305 131 28 chr9 70549815 70549960 -53526212 + L1MD LINE L1 2861 3020 -3126 1 1123 390 21 0 0 chr9 70549979 70550026 -53526146 + (CCTG)n Simple_repeat Simple_repeat 1 47 0 1 1123 915 156 0 0 chr9 70550027 70550187 -53525985 + CT-rich Low_complexity Low_complexity 2 161 0 1 1123 677 221 0 35 chr9 70550205 70550350 -53525822 - B1_Mur2 SINE Alu -9 140 1 1 1123 205 146 0 47 chr9 70550696 70550739 -53525433 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 1 1123 732 194 50 14 chr9 70550739 70550880 -53525292 - B1_Mm SINE Alu 0 147 2 1 1123 4015 28 2 0 chr9 70551900 70552506 -53523666 + L1Md_F2 LINE L1 5469 6075 -507 1 1123 910 234 15 5 chr9 70552651 70552857 -53523315 - B3 SINE B2 -7 209 2 1 1123 344 266 25 58 chr9 70553686 70553806 -53522366 + PB1D10 SINE Alu 1 116 -1 1 1123 1946 145 35 68 chr9 70554166 70554536 -53521636 - ORR1B1 LTR MaLR -8 386 29 1 1123 329 198 8 144 chr9 70554731 70554849 -53521323 + MT2B LTR ERVL 163 264 -337 1 1123 730 228 0 0 chr9 70554747 70554883 -53521289 + B1_Mm SINE Alu 11 146 -1 1 1123 940 248 14 19 chr9 70554962 70555176 -53520996 - ID_B1 SINE B4 -10 214 2 1 1123 701 223 0 20 chr9 70555181 70555332 -53520840 - B1F SINE Alu -1 148 1 1 1123 468 310 30 83 chr9 70556207 70556376 -53519796 - RSINE1 SINE B4 -1 164 5 1 1123 351 0 0 0 chr9 70556385 70556424 -53519748 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1123 240 194 15 61 chr9 70556424 70556490 -53519682 - B1F2 SINE Alu -55 95 32 1 1123 403 274 10 5 chr9 70556500 70556625 -53519547 - B1F SINE Alu -18 131 33 1 1123 774 275 109 41 chr9 70556671 70556891 -53519281 - B4 SINE B4 -2 290 56 1 1123 373 319 0 16 chr9 70557252 70557396 -53518776 + GA-rich Low_complexity Low_complexity 1 141 0 1 1123 603 161 43 21 chr9 70558024 70558164 -53518008 - Lx3B LINE L1 0 6973 6831 1 1123 593 215 74 0 chr9 70558197 70558318 -53517854 + RSINE1 SINE B4 6 135 -30 1 1123 396 0 0 0 chr9 70558322 70558366 -53517806 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1123 485 195 11 0 chr9 70558643 70558730 -53517442 + ORR1E LTR MaLR 3 90 -269 1 1123 291 286 92 7 chr9 70558738 70558879 -53517293 - L1M5 LINE L1 -1446 4700 4548 1 1123 354 233 64 64 chr9 70558965 70559153 -53517019 - L1M5 LINE L1 -1591 4555 4368 1 1123 610 195 17 17 chr9 70560076 70560196 -53515976 + PB1D9 SINE Alu 1 120 0 1 1123 396 0 0 0 chr9 70560221 70560265 -53515907 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1123 492 268 103 34 chr9 70560450 70560716 -53515456 - L1M5 LINE L1 -1999 4147 3849 1 1123 1383 62 10 40 chr9 70560716 70560916 -53515256 - B2_Mm2 SINE B2 0 195 2 1 1123 492 244 80 38 chr9 70560916 70560985 -53515187 - L1M5 LINE L1 -2298 3848 3778 1 1123 562 227 10 153 chr9 70560985 70561188 -53514984 - MTEa LTR MaLR -2 377 204 1 1123 813 100 200 0 chr9 70561352 70561492 -53514680 + URR1A DNA MER1_type 1 168 -58 1 1123 243 293 26 39 chr9 70561533 70561611 -53514561 - ID4 SINE ID -2 81 5 1 1123 1003 230 9 23 chr9 70561901 70562119 -53514053 + B3 SINE B2 2 216 0 1 1123 1299 184 174 23 chr9 70562167 70562511 -53513661 - RMER13A LTR ERVK -399 461 66 1 1123 6584 234 203 32 chr9 70562578 70563360 -53512812 - Lx7 LINE L1 0 7696 6781 1 1123 4815 59 13 8 chr9 70563360 70563989 -53512183 + L1_Mus1 LINE L1 5936 6567 0 1 1123 183 42 0 0 chr9 70563997 70564021 -53512151 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1123 6584 227 82 22 chr9 70564021 70565244 -53510928 - Lx7 LINE L1 -916 6780 5472 1 1123 364 321 127 14 chr9 70565340 70565482 -53510690 - MER21B LTR ERV1 -360 503 346 1 1123 303 300 14 0 chr9 70565736 70565806 -53510366 - MER21B LTR ERV1 -768 95 25 1 1123 247 330 103 0 chr9 70566177 70566274 -53509898 - MIRb SINE MIR -9 259 153 1 1123 302 224 0 0 chr9 70566292 70566350 -53509822 - B1F1 SINE Alu -9 140 83 1 1123 1301 92 0 5 chr9 70566808 70567005 -53509167 - L1_Mus4 LINE L1 -1 6635 6440 1 1123 206 81 0 26 chr9 70567353 70567391 -53508781 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1123 386 300 17 52 chr9 70567797 70567913 -53508259 - PB1D10 SINE Alu -1 116 5 1 1123 461 248 20 0 chr9 70568649 70568750 -53507422 + PB1D10 SINE Alu 10 112 -5 1 1123 290 227 22 22 chr9 70568940 70569030 -53507142 + CT-rich Low_complexity Low_complexity 2 91 0 1 1123 232 275 8 16 chr9 70569050 70569172 -53507000 + CT-rich Low_complexity Low_complexity 2 122 0 1 1123 234 337 174 0 chr9 70569747 70569845 -53506327 - B1F SINE Alu -34 115 1 1 1123 182 338 0 56 chr9 70570108 70570180 -53505992 - L2a LINE L2 -21 3405 3338 1 1123 391 319 60 27 chr9 70572430 70572614 -53503558 + B4A SINE B4 90 279 -13 1 1123 257 372 0 0 chr9 70572658 70572744 -53503428 - MER58B DNA MER1_type -253 88 3 1 1123 325 311 44 29 chr9 70572848 70572984 -53503188 - MIRb SINE MIR -28 240 103 1 1123 35 0 0 0 chr9 70573278 70573313 -53502859 + AT_rich Low_complexity Low_complexity 1 35 0 1 1123 1400 76 22 0 chr9 70573728 70573913 -53502259 - B2_Mm2 SINE B2 -5 190 2 1 1123 183 207 65 65 chr9 70574413 70574475 -53501697 - MIRb SINE MIR -81 187 126 2 1123 268 254 28 0 chr9 70574626 70574697 -53501475 + B1F SINE Alu 77 149 0 2 1123 746 203 28 0 chr9 70575018 70575161 -53501011 + B1F SINE Alu 1 147 -2 2 1123 188 286 0 0 chr9 70575892 70575934 -53500238 - L2c LINE L2 -232 3155 3114 2 1123 359 0 43 0 chr9 70575996 70576042 -53500130 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 2 1123 189 0 0 0 chr9 70576889 70576910 -53499262 + (CTGGGG)n Simple_repeat Simple_repeat 5 25 0 2 1123 294 29 0 0 chr9 70577682 70577717 -53498455 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1123 22 56 0 0 chr9 70577898 70577934 -53498238 + AT_rich Low_complexity Low_complexity 1 36 0 2 1123 642 259 65 46 chr9 70577934 70578197 -53497975 + Tigger6b DNA MER2_type 1330 1597 0 2 1123 232 327 206 50 chr9 70578319 70578589 -53497583 - L2 LINE L2 -2165 1254 947 2 1123 2116 73 16 20 chr9 70578589 70578894 -53497278 + L1Md_F2 LINE L1 6267 6570 -12 2 1123 232 327 206 50 chr9 70578894 70579148 -53497024 - L2 LINE L2 -2473 946 648 2 1123 1164 167 107 16 chr9 70579347 70579591 -53496581 - Lx5 LINE L1 -7 7043 6778 2 1123 298 200 0 30 chr9 70580033 70580100 -53496072 + Ricksha DNA MuDR 29 93 -3153 2 1123 302 302 46 11 chr9 70580138 70580225 -53495947 + PB1 SINE Alu 25 114 -13 2 1123 342 0 0 0 chr9 70580313 70580351 -53495821 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1123 746 210 21 7 chr9 70580449 70580593 -53495579 + B1F SINE Alu 4 149 0 2 1123 283 196 0 0 chr9 70580644 70580700 -53495472 + Ricksha DNA MuDR 2002 2057 -1189 2 1123 209 173 39 0 chr9 70580707 70580759 -53495413 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 2 1123 623 233 9 0 chr9 70581341 70581457 -53494715 + B4A SINE B4 104 220 -72 2 1123 203 88 29 0 chr9 70581472 70581506 -53494666 + (TGG)n Simple_repeat Simple_repeat 1 35 0 2 1123 1007 239 5 10 chr9 70581513 70581712 -53494460 + B3 SINE B2 5 202 -14 2 1123 800 111 0 8 chr9 70581718 70581845 -53494327 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 2 1123 579 122 0 0 chr9 70581876 70581966 -53494206 + (GA)n Simple_repeat Simple_repeat 2 91 0 2 1123 942 212 76 29 chr9 70582067 70582497 -53493675 + Ricksha DNA MuDR 2137 2629 -617 2 1123 582 236 64 7 chr9 70582498 70582639 -53493533 + B1_Mur2 SINE Alu 1 149 0 2 1123 609 52 0 0 chr9 70582665 70582742 -53493430 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1123 1150 51 0 0 chr9 70583112 70583250 -53492922 + B1_Mus1 SINE Alu 2 139 -9 2 1123 295 132 19 0 chr9 70583276 70583329 -53492843 + Ricksha DNA MuDR 3069 3122 -124 2 1123 650 63 21 0 chr9 70583444 70583539 -53492633 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 2 1123 1756 142 43 7 chr9 70584716 70585021 -53491151 - ORR1D1 LTR MaLR 0 374 59 2 1123 2665 162 75 66 chr9 70585021 70585595 -53490577 - Lx9 LINE L1 -248 7396 6818 2 1123 198 0 0 0 chr9 70585595 70585617 -53490555 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2 1123 3463 63 25 6 chr9 70585644 70586121 -53490051 - Lx3_Mus LINE L1 -502 6507 6022 2 1123 1048 224 289 23 chr9 70586117 70586643 -53489529 - Lx9 LINE L1 -806 6838 6158 2 1123 333 0 0 0 chr9 70586643 70586680 -53489492 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 2 1123 1048 241 143 37 chr9 70586680 70586892 -53489280 - Lx9 LINE L1 -1487 6157 5938 2 1123 822 211 72 39 chr9 70587594 70587801 -53488371 - B3 SINE B2 -2 214 1 2 1123 295 215 0 102 chr9 70588132 70588220 -53487952 + B3 SINE B2 1 79 -137 2 1123 213 216 18 73 chr9 70588507 70588562 -53487610 + PB1D10 SINE Alu 8 59 -58 2 1123 23 0 0 0 chr9 70588798 70588821 -53487351 + AT_rich Low_complexity Low_complexity 1 23 0 2 1123 543 238 13 95 chr9 70588862 70589020 -53487152 + ID_B1 SINE B4 78 222 -2 2 1123 274 283 125 42 chr9 70589023 70589167 -53487005 + L1M5 LINE L1 2483 2638 -3508 2 1123 3819 52 2 4 chr9 70589242 70589723 -53486449 + L1Md_F2 LINE L1 6089 6568 -14 2 1123 228 235 13 117 chr9 70590036 70590113 -53486059 - ID4_ SINE ID -13 70 2 2 1123 22 35 0 0 chr9 70590972 70591001 -53485171 + AT_rich Low_complexity Low_complexity 1 29 0 2 1123 423 0 0 0 chr9 70591180 70591227 -53484945 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1123 549 0 0 0 chr9 70591278 70591339 -53484833 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1123 373 252 48 26 chr9 70592249 70592374 -53483798 - B1F SINE Alu -11 138 10 2 1123 1212 27 0 7 chr9 70592727 70592874 -53483298 - B1_Mm SINE Alu 0 147 2 2 1123 205 331 58 84 chr9 70593445 70593600 -53482572 + L2a LINE L2 3268 3418 -8 2 1123 866 203 66 52 chr9 70594172 70594385 -53481787 + B3 SINE B2 1 216 0 2 1123 600 304 13 6 chr9 70594465 70594624 -53481548 + B4A SINE B4 131 290 -2 2 1123 345 225 92 67 chr9 70596271 70596390 -53479782 + PB1D10 SINE Alu 6 127 0 2 1123 205 311 109 47 chr9 70597565 70597693 -53478479 + MER5A DNA MER1_type 52 187 -2 2 1123 318 169 34 0 chr9 70597828 70597887 -53478285 + PB1D10 SINE Alu 56 116 -1 2 1123 180 0 0 0 chr9 70598297 70598317 -53477855 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1123 336 136 0 17 chr9 70599493 70599553 -53476619 + tRNA-Ala-GCA tRNA tRNA 1 59 -16 2 1123 241 279 35 11 chr9 70599553 70599580 -53476592 + BC1_Mm scRNA scRNA 7 95 -57 2 1123 27 49 0 0 chr9 70600001 70600042 -53476130 + AT_rich Low_complexity Low_complexity 1 41 0 2 1123 215 121 0 0 chr9 70600878 70600911 -53475261 + (TTTCC)n Simple_repeat Simple_repeat 2 34 0 2 1123 654 233 0 0 chr9 70600911 70601070 -53475102 + CT-rich Low_complexity Low_complexity 3 161 0 2 1123 686 142 70 8 chr9 70601073 70601201 -53474971 - Lx3B LINE L1 -11 6962 6827 2 1123 23 0 0 0 chr9 70601936 70601959 -53474213 + AT_rich Low_complexity Low_complexity 1 23 0 2 1123 268 295 37 28 chr9 70602331 70602439 -53473733 - PB1D10 SINE Alu -8 109 1 2 1123 356 288 164 26 chr9 70602712 70602901 -53473271 - MER58C DNA MER1_type 0 215 1 2 1123 277 328 15 0 chr9 70603282 70603349 -53472823 + tRNA-Ala-GCA tRNA tRNA 1 68 -7 2 1123 234 0 0 0 chr9 70603627 70603653 -53472519 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1123 483 259 58 67 chr9 70603665 70603785 -53472387 - B1_Mur2 SINE Alu -27 122 4 2 1123 485 266 112 87 chr9 70603785 70604061 -53472111 - B4A SINE B4 -9 283 1 2 1123 183 200 0 0 chr9 70604264 70604299 -53471873 + MIRm SINE MIR 238 272 -4 2 1123 1216 70 12 6 chr9 70604445 70604617 -53471555 - B2_Mm2 SINE B2 -21 174 2 2 1123 478 170 40 10 chr9 70604653 70604754 -53471418 - ORR1B2 LTR MaLR -263 104 1 2 1123 7212 156 60 39 chr9 70604754 70606232 -53469940 - ORR1B2-int LTR MaLR 0 1509 1 2 1123 1650 141 169 3 chr9 70606237 70606544 -53469628 - ORR1B2 LTR MaLR -9 358 1 2 1123 641 268 71 40 chr9 70606664 70606862 -53469310 - B3 SINE B2 -10 206 3 2 1123 387 275 67 27 chr9 70607094 70607117 -53469055 - ID_B1 SINE B4 -44 248 158 2 1123 467 248 29 0 chr9 70607117 70607222 -53468950 - PB1D10 SINE Alu 0 117 10 2 1123 387 275 67 27 chr9 70607222 70607240 -53468932 - ID_B1 SINE B4 -44 157 77 2 1123 280 388 77 41 chr9 70608183 70608379 -53467793 - B4A SINE B4 -6 286 84 2 1123 186 43 0 0 chr9 70608410 70608433 -53467739 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1123 375 219 225 8 chr9 70608445 70608565 -53467607 - RSINE1 SINE B4 -19 146 1 2 1123 257 322 22 11 chr9 70608566 70608657 -53467515 - B4A SINE B4 -199 93 2 2 1123 749 227 19 0 chr9 70609618 70609772 -53466400 - RSINE1 SINE B4 -6 159 3 2 1123 243 287 10 21 chr9 70609888 70609984 -53466188 - L1ME2z LINE L1 -189 6255 6161 2 1123 209 200 0 0 chr9 70609986 70610021 -53466151 + polypyrimidine Low_complexity Low_complexity 3 37 0 2 1123 310 279 39 37 chr9 70610248 70610399 -53465773 - L1MA4 LINE L1 -382 5918 5742 2 1123 607 190 0 8 chr9 70610399 70610516 -53465656 + B1_Mur1 SINE Alu 5 120 -29 2 1123 249 57 0 0 chr9 70610535 70610570 -53465602 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1123 297 141 97 14 chr9 70610763 70610835 -53465337 - L1MD2 LINE L1 -246 6113 6036 2 1123 1396 129 0 0 chr9 70610830 70611032 -53465140 - L1_Mm LINE L1 -207 5676 5475 2 1123 221 346 12 49 chr9 70611085 70611167 -53465005 - PB1D10 SINE Alu -38 79 1 2 1123 1373 68 0 0 chr9 70612090 70612266 -53463906 + L1_Mus1 LINE L1 6391 6566 -1 2 1123 1606 157 68 10 chr9 70612799 70613107 -53463065 - ORR1A1 LTR MaLR -20 326 1 2 1123 909 227 14 42 chr9 70613473 70613689 -53462483 - B3 SINE B2 -5 211 2 2 1123 281 200 31 0 chr9 70615419 70615484 -53460688 - ID4 SINE ID 0 83 17 2 1123 1069 44 0 0 chr9 70615928 70616064 -53460108 + B2_Mm2 SINE B2 1 136 -59 2 1123 234 0 0 0 chr9 70616073 70616099 -53460073 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 1123 592 307 32 28 chr9 70617445 70617663 -53458509 + ID_B1 SINE B4 6 224 0 2 1123 227 93 0 23 chr9 70618895 70618939 -53457233 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 2 1123 663 54 0 0 chr9 70619127 70619219 -53456953 - B1_Mm SINE Alu -55 92 1 2 1123 492 73 49 0 chr9 70619223 70619305 -53456867 - L1_Mus2 LINE L1 0 6566 6481 2 1123 220 288 68 14 chr9 70619374 70619448 -53456724 - PB1 SINE Alu -20 107 30 2 1123 582 86 0 0 chr9 70619568 70619649 -53456523 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1123 462 163 36 55 chr9 70619662 70619772 -53456400 - B1_Mus1 SINE Alu -40 108 1 2 1123 420 243 19 10 chr9 70620178 70620282 -53455890 - B3 SINE B2 -68 148 44 2 1123 219 23 44 44 chr9 70620421 70620466 -53455706 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 2 1123 246 285 90 12 chr9 70621220 70621387 -53454785 + L1M6 LINE L1 862 1041 -5455 2 1123 386 317 68 20 chr9 70621580 70621728 -53454444 + MER102b DNA MER1_type 4 158 -183 2 1123 460 262 74 0 chr9 70622038 70622160 -53454012 - ID_B1 SINE B4 -10 214 84 2 1123 820 218 12 18 chr9 70622215 70622383 -53453789 - B3 SINE B2 -44 172 6 3 1123 404 225 61 23 chr9 70622760 70622892 -53453280 + L1MC4 LINE L1 6802 6938 -1104 3 1123 523 325 78 4 chr9 70622964 70623233 -53452939 + L1MC4 LINE L1 7232 7520 -522 3 1123 796 279 85 19 chr9 70623488 70623747 -53452425 - B4A SINE B4 -2 290 15 3 1123 440 239 108 16 chr9 70625473 70625719 -53450453 + MER33 DNA MER1_type 42 322 -2 3 1123 284 324 18 18 chr9 70628357 70628467 -53447705 + PB1D10 SINE Alu 3 112 -5 3 1123 186 103 0 0 chr9 70628779 70628808 -53447364 + (TTTTTG)n Simple_repeat Simple_repeat 6 34 0 3 1123 238 162 253 36 chr9 70628808 70628891 -53447281 - PB1D9 SINE Alu 0 120 20 3 1123 207 0 0 0 chr9 70629620 70629643 -53446529 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1123 369 252 61 0 chr9 70629675 70629790 -53446382 + PB1 SINE Alu 1 122 -5 3 1123 420 234 32 0 chr9 70630744 70630838 -53445334 + L1MC5 LINE L1 6694 6790 -1171 3 1123 347 212 12 48 chr9 70631476 70631560 -53444612 - ID4_ SINE ID -1 82 2 3 1123 379 284 57 38 chr9 70631587 70631796 -53444376 + L1MC5 LINE L1 7701 7913 -48 3 1123 399 344 44 38 chr9 70631796 70632089 -53444083 - Charlie13b DNA Charlie -130 382 88 3 1123 894 181 62 0 chr9 70632718 70632911 -53443261 + B3 SINE B2 8 212 -4 3 1123 22 0 0 0 chr9 70632932 70632954 -53443218 + AT_rich Low_complexity Low_complexity 1 22 0 3 1123 1172 218 389 22 chr9 70633036 70633119 -53443053 - Lx8 LINE L1 -123 7350 7221 3 1123 372 22 0 0 chr9 70633119 70633164 -53443008 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1123 1172 218 389 22 chr9 70633164 70633581 -53442591 - Lx8 LINE L1 -253 7220 6667 3 1123 202 292 116 9 chr9 70633877 70633985 -53442187 - L2a LINE L2 -18 3408 3240 3 1123 253 318 135 0 chr9 70634882 70635008 -53441164 + MIRb SINE MIR 81 223 -45 3 1123 747 310 89 31 chr9 70635177 70635470 -53440702 - MTE2b LTR MaLR -44 335 26 3 1123 299 229 0 14 chr9 70635499 70635570 -53440602 - MTEb LTR MaLR -16 363 294 3 1123 839 218 0 0 chr9 70636008 70636155 -53440017 - B1_Mur1 SINE Alu 0 149 3 3 1123 732 266 16 10 chr9 70636176 70636370 -53439802 - ID_B1 SINE B4 -29 195 1 3 1123 459 63 0 0 chr9 70637190 70637253 -53438919 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1123 588 260 8 0 chr9 70637259 70637382 -53438790 - RSINE1 SINE B4 -40 125 2 3 1123 212 196 39 19 chr9 70637451 70637503 -53438669 + ID2 SINE ID 6 58 -25 3 1123 393 22 0 0 chr9 70637666 70637712 -53438460 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 3 1123 301 316 12 25 chr9 70637717 70637798 -53438374 - PB1D10 SINE Alu -37 80 1 3 1123 543 108 0 0 chr9 70637817 70637910 -53438262 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1123 769 307 53 18 chr9 70638276 70638558 -53437614 + B4A SINE B4 1 292 0 3 1123 467 229 73 8 chr9 70639097 70639220 -53436952 + RSINE1 SINE B4 3 133 -32 3 1123 412 274 0 26 chr9 70639269 70639385 -53436787 + PB1D10 SINE Alu 5 117 0 3 1123 213 278 0 18 chr9 70639433 70639488 -53436684 + GA-rich Low_complexity Low_complexity 1 54 0 3 1123 473 270 100 13 chr9 70639668 70639818 -53436354 + RSINE1 SINE B4 3 165 0 3 1123 1008 214 0 58 chr9 70639994 70640217 -53435955 - B3 SINE B2 0 216 7 3 1123 471 78 0 0 chr9 70640250 70640314 -53435858 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1123 568 290 0 7 chr9 70640318 70640457 -53435715 - B3A SINE B2 -37 161 24 3 1123 487 212 6 189 chr9 70641213 70641393 -53434779 + B1F SINE Alu 3 149 0 3 1123 309 281 98 35 chr9 70641457 70641660 -53434512 + L1M5 LINE L1 4852 5067 -1079 3 1123 524 212 8 63 chr9 70641796 70641922 -53434250 + B3A SINE B2 1 119 -79 3 1123 423 56 0 0 chr9 70641934 70641988 -53434184 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1123 231 82 45 90 chr9 70641998 70642065 -53434107 + (CAGAGA)n Simple_repeat Simple_repeat 5 68 0 3 1123 1891 139 32 62 chr9 70643350 70643719 -53432453 + ORR1B2 LTR MaLR 2 359 -8 3 1123 439 322 12 69 chr9 70644755 70644915 -53431257 - B3A SINE B2 0 198 48 3 1123 225 0 0 0 chr9 70644956 70644981 -53431191 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 3 1123 241 289 71 12 chr9 70645142 70645226 -53430946 - MLT1A0 LTR MaLR -276 89 1 3 1123 387 0 0 0 chr9 70645795 70645838 -53430334 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1123 180 0 0 0 chr9 70646735 70646755 -53429417 + (TATG)n Simple_repeat Simple_repeat 1 20 0 3 1123 527 233 0 6 chr9 70646755 70646932 -53429240 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 3 1123 396 237 123 0 chr9 70647356 70647470 -53428702 + MER5A1 DNA MER1_type 35 162 -4 3 140 1134 260 84 4 chr9 70647740 70648003 -53428169 - B4 SINE B4 -5 287 4 3 1124 229 295 45 11 chr9 70649078 70649167 -53427005 + MER5A DNA MER1_type 70 161 -28 3 1124 414 0 0 0 chr9 70649223 70649269 -53426903 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1124 440 275 17 12 chr9 70649270 70649443 -53426729 + (CAGAGA)n Simple_repeat Simple_repeat 1 174 0 3 1124 211 393 6 6 chr9 70649361 70649530 -53426642 + GA-rich Low_complexity Low_complexity 3 171 0 3 1124 261 0 0 0 chr9 70651688 70651717 -53424455 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1124 952 205 14 10 chr9 70651719 70651926 -53424246 - ID_B1 SINE B4 0 224 17 3 1124 301 261 33 33 chr9 70651928 70652019 -53424153 - PB1D10 SINE Alu -3 114 24 3 1124 21 0 0 0 chr9 70652072 70652093 -53424079 + AT_rich Low_complexity Low_complexity 1 21 0 3 1124 489 58 0 0 chr9 70652388 70652457 -53423715 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1124 465 287 84 18 chr9 70653382 70653549 -53422623 - MIR SINE MIR -67 195 18 3 1124 677 218 0 26 chr9 70653725 70653876 -53422296 + B1_Mur3 SINE Alu 2 148 -1 3 1124 577 220 0 9 chr9 70653941 70654051 -53422121 - PB1 SINE Alu -7 120 12 3 1124 485 237 110 115 chr9 70654391 70654526 -53421646 + B3A SINE B2 3 155 -43 3 1124 423 0 0 0 chr9 70654526 70654573 -53421599 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1124 485 237 110 115 chr9 70654573 70654628 -53421544 + B3A SINE B2 156 192 -6 3 1124 1106 222 9 0 chr9 70655280 70655501 -53420671 - ID_B1 SINE B4 0 224 2 3 1124 505 267 0 0 chr9 70656583 70656703 -53419469 + PB1D7 SINE Alu 1 120 0 3 1124 369 0 0 0 chr9 70656736 70656777 -53419395 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1124 224 302 0 16 chr9 70656937 70657001 -53419171 + ID4 SINE ID 9 71 -12 3 1124 240 279 12 19 chr9 70657691 70657852 -53418320 + (TATATG)n Simple_repeat Simple_repeat 6 165 0 3 1124 270 236 17 41 chr9 70657915 70658087 -53418085 + (TATATG)n Simple_repeat Simple_repeat 1 168 0 3 1124 217 241 11 46 chr9 70658595 70658682 -53417490 + (CAGAGA)n Simple_repeat Simple_repeat 1 84 0 3 1124 201 26 25 50 chr9 70658763 70658803 -53417369 + (TATAG)n Simple_repeat Simple_repeat 2 40 0 3 1124 217 293 13 26 chr9 70659706 70659783 -53416389 + ID4_ SINE ID 2 77 -6 3 1124 701 202 8 0 chr9 70659718 70659847 -53416325 + RSINE1 SINE B4 15 144 -21 3 1124 432 0 0 0 chr9 70660772 70660820 -53415352 + (CAA)n Simple_repeat Simple_repeat 2 49 0 3 1124 293 47 0 23 chr9 70660823 70660867 -53415305 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1124 396 0 0 0 chr9 70660922 70660966 -53415206 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1124 277 342 0 64 chr9 70661306 70661431 -53414741 + RSINE1 SINE B4 2 118 -47 3 1124 231 65 21 42 chr9 70661460 70661508 -53414664 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 1124 183 42 0 0 chr9 70661522 70661546 -53414626 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1124 373 362 14 28 chr9 70661547 70661692 -53414480 - RSINE1 SINE B4 -20 145 3 3 1124 909 0 0 0 chr9 70661707 70661808 -53414364 + (TCTCC)n Simple_repeat Simple_repeat 5 105 0 3 1124 266 123 0 17 chr9 70661809 70661867 -53414305 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 3 1124 1230 48 0 0 chr9 70661867 70662013 -53414159 - B1_Mm SINE Alu 0 147 2 3 1124 280 219 146 0 chr9 70662017 70662099 -53414073 - PB1D7 SINE Alu -2 118 25 3 1124 208 79 26 26 chr9 70663160 70663199 -53412973 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 3 1124 1199 62 7 0 chr9 70663203 70663349 -53412823 - B1_Mus2 SINE Alu 0 147 1 3 1124 657 287 57 14 chr9 70663536 70663748 -53412424 + B4 SINE B4 3 223 -69 3 1124 199 50 0 70 chr9 70663748 70663791 -53412381 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1124 507 153 0 0 chr9 70663861 70663959 -53412213 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1124 228 155 0 40 chr9 70665495 70665569 -53410603 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1124 333 254 6 18 chr9 70665581 70665757 -53410415 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 1124 206 247 11 27 chr9 70665836 70666019 -53410153 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1124 298 274 35 62 chr9 70666019 70666132 -53410040 - B4A SINE B4 0 292 183 3 1124 185 103 77 0 chr9 70666364 70666403 -53409769 + A-rich Low_complexity Low_complexity 1 42 0 3 1124 241 314 0 157 chr9 70667241 70667360 -53408812 + RMER30 DNA MER1_type 20 118 -84 3 1124 600 268 52 13 chr9 70667360 70667515 -53408657 - RSINE1 SINE B4 -2 163 3 3 1124 241 314 0 157 chr9 70667515 70667561 -53408611 + RMER30 DNA MER1_type 119 159 -43 3 1124 1535 181 167 3 chr9 70667577 70667805 -53408367 - MTD LTR MaLR -14 405 123 3 1124 387 60 0 0 chr9 70667805 70667855 -53408317 + (TGG)n Simple_repeat Simple_repeat 1 50 0 3 1124 1535 181 167 3 chr9 70667855 70667974 -53408198 - MTD LTR MaLR -297 122 3 3 1124 521 309 12 35 chr9 70669383 70669518 -53406654 - HAL1-2a_MD LINE L1 -513 2511 2381 3 1124 1992 141 46 53 chr9 70669518 70669931 -53406241 + RMER17C LTR ERVK 1 410 0 3 1124 521 309 12 35 chr9 70669931 70669966 -53406206 - HAL1-2a_MD LINE L1 -644 2380 2346 3 1124 238 316 32 64 chr9 70670096 70670221 -53405951 - L2c LINE L2 0 3387 3267 3 1124 384 59 0 0 chr9 70670438 70670489 -53405683 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1124 702 192 145 7 chr9 70670559 70670711 -53405461 + ID_B1 SINE B4 16 188 -36 4 1124 244 338 26 0 chr9 70670770 70670847 -53405325 + B4 SINE B4 7 85 -207 4 1124 914 213 11 21 chr9 70670857 70671044 -53405128 + B3A SINE B2 1 185 -13 4 1124 327 217 71 24 chr9 70671691 70671776 -53404396 - MIRb SINE MIR -133 135 47 4 1124 468 0 0 0 chr9 70672816 70672868 -53403304 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1124 562 223 258 15 chr9 70672936 70673068 -53403104 - RSINE1 SINE B4 0 165 2 4 1124 525 280 24 58 chr9 70673234 70673439 -53402733 - B3A SINE B2 0 198 1 4 1124 335 209 30 0 chr9 70673779 70673846 -53402326 - ID4_ SINE ID -13 70 2 4 1124 324 0 0 0 chr9 70673866 70673902 -53402270 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1124 659 188 106 30 chr9 70673906 70674038 -53402134 - B3A SINE B2 -56 142 1 4 1124 243 0 0 0 chr9 70674621 70674648 -53401524 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1124 979 204 25 35 chr9 70674908 70675111 -53401061 + ID_B1 SINE B4 21 221 -3 4 1124 613 204 21 187 chr9 70675117 70675156 -53401016 + B3A SINE B2 3 34 -164 4 1124 907 140 34 20 chr9 70675156 70675302 -53400870 + B1_Mur3 SINE Alu 1 148 -1 4 1124 613 204 21 187 chr9 70675302 70675497 -53400675 + B3A SINE B2 35 198 0 4 1124 392 175 0 45 chr9 70675796 70675862 -53400310 - Charlie12 DNA MER1_type -3 2870 2808 4 1124 342 0 0 0 chr9 70676171 70676209 -53399963 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1124 21 36 0 0 chr9 70676565 70676593 -53399579 + AT_rich Low_complexity Low_complexity 1 28 0 4 1124 4495 152 36 52 chr9 70676662 70677470 -53398702 + RMER13A LTR ERVK 1 795 -65 4 1124 441 164 41 0 chr9 70677469 70677542 -53398630 - B3A SINE B2 -119 79 4 4 1124 497 325 19 6 chr9 70677648 70677809 -53398363 - RSINE1 SINE B4 -1 164 2 4 1124 866 298 42 59 chr9 70678895 70679104 -53397068 + B4A SINE B4 2 212 -80 4 1124 1157 227 149 24 chr9 70679104 70679474 -53396698 - MTD LTR MaLR -2 417 2 4 1124 866 298 42 59 chr9 70679474 70679553 -53396619 + B4A SINE B4 213 285 -7 4 1124 25 65 0 0 chr9 70679683 70679729 -53396443 + AT_rich Low_complexity Low_complexity 1 46 0 4 1124 333 258 48 58 chr9 70679801 70679904 -53396268 - MIRb SINE MIR -129 139 38 4 1124 24 0 0 0 chr9 70679904 70679928 -53396244 + AT_rich Low_complexity Low_complexity 1 24 0 4 1124 239 299 89 84 chr9 70679928 70680118 -53396054 - B3A SINE B2 -1 197 7 4 1124 604 231 12 52 chr9 70679957 70680119 -53396053 - RSINE1 SINE B4 -3 162 8 4 1124 368 244 88 7 chr9 70680561 70680696 -53395476 - B4 SINE B4 0 165 7 4 1124 747 278 40 5 chr9 70680727 70680926 -53395246 - ID_B1 SINE B4 -16 208 3 4 1124 501 17 0 0 chr9 70681365 70681423 -53394749 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1124 315 0 0 0 chr9 70681423 70681457 -53394715 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1124 851 8 30 23 chr9 70681853 70681984 -53394188 + (TTCTC)n Simple_repeat Simple_repeat 4 135 0 4 1124 1003 249 10 0 chr9 70681986 70682195 -53393977 - ID_B1 SINE B4 -11 213 3 4 1124 255 267 80 0 chr9 70682205 70682280 -53393892 - ID_B1 SINE B4 -101 123 43 4 1124 591 244 8 25 chr9 70682871 70682990 -53393182 + RSINE1 SINE B4 3 119 -46 4 1124 315 167 0 32 chr9 70682990 70683052 -53393120 + B1_Mus1 SINE Alu 1 60 -88 4 1124 344 0 0 161 chr9 70683053 70683233 -53392939 + (CAGAG)n Simple_repeat Simple_repeat 5 155 0 4 1124 628 146 0 28 chr9 70683236 70683342 -53392830 + B1_Mur4 SINE Alu 43 145 -5 4 1124 264 235 0 0 chr9 70683344 70683412 -53392760 + GA-rich Low_complexity Low_complexity 2 69 0 4 1124 300 331 69 19 chr9 70683593 70683753 -53392419 + L1MC LINE L1 5340 5507 -2375 4 1124 196 30 61 0 chr9 70683862 70683895 -53392277 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1124 1134 64 0 14 chr9 70683895 70684032 -53392140 - B1_Mus2 SINE Alu -11 136 1 4 1124 711 208 8 0 chr9 70684124 70684244 -53391928 - RSINE1 SINE B4 -43 122 2 4 1124 277 331 36 7 chr9 70684252 70684392 -53391780 + L1MC LINE L1 5613 5756 -2126 4 1124 538 209 62 18 chr9 70684688 70684800 -53391372 - PB1D7 SINE Alu 0 120 4 4 1124 402 74 0 0 chr9 70686334 70686388 -53389784 + (TCC)n Simple_repeat Simple_repeat 1 54 0 4 1124 180 179 0 0 chr9 70686707 70686746 -53389426 + CT-rich Low_complexity Low_complexity 1 39 0 4 1124 837 199 7 0 chr9 70687277 70687418 -53388754 - B1_Mur2 SINE Alu -7 142 1 4 1124 506 229 93 0 chr9 70688287 70688405 -53387767 + RSINE1 SINE B4 9 137 -28 4 1124 216 0 0 0 chr9 70688669 70688693 -53387479 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1124 422 306 123 11 chr9 70689196 70689473 -53386699 - L1ME3 LINE L1 -22 6140 5833 4 1124 1002 234 9 14 chr9 70689982 70690199 -53385973 - ID_B1 SINE B4 -1 223 8 4 1124 400 331 66 61 chr9 70690175 70690371 -53385801 + MER20 DNA MER1_type 23 219 0 4 1124 249 367 34 0 chr9 70690423 70690547 -53385625 + MIR SINE MIR 2 132 -144 4 1124 510 17 0 0 chr9 70690547 70690606 -53385566 + (TCC)n Simple_repeat Simple_repeat 2 60 0 4 1124 270 0 0 0 chr9 70690961 70690991 -53385181 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1124 970 217 44 0 chr9 70691173 70691376 -53384796 + B3 SINE B2 2 213 -3 4 1124 1125 222 67 70 chr9 70691422 70691729 -53384443 + B4A SINE B4 9 290 -2 4 1124 327 262 155 49 chr9 70692064 70692142 -53384030 - L1MEc LINE L1 -4851 1549 1464 4 1124 1393 39 0 11 chr9 70692142 70692324 -53383848 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1124 327 262 155 49 chr9 70692324 70692429 -53383743 - L1MEc LINE L1 -4937 1463 1342 4 1124 414 0 0 0 chr9 70692429 70692475 -53383697 + (TTA)n Simple_repeat Simple_repeat 3 48 0 4 1124 327 262 155 49 chr9 70692475 70692535 -53383637 - L1MEc LINE L1 -5059 1341 1282 4 1124 280 243 27 11 chr9 70692581 70692691 -53383481 - L1MEc LINE L1 -5139 1276 1069 4 1124 863 251 53 29 chr9 70692810 70693019 -53383153 + ID_B1 SINE B4 6 219 -5 4 1124 422 275 111 31 chr9 70693067 70693356 -53382816 - L1MEc LINE L1 -5488 912 601 4 1124 359 248 36 18 chr9 70693514 70693625 -53382547 - L1MEc LINE L1 -6159 241 129 4 1124 631 260 93 3 chr9 70694348 70694526 -53381646 + B3 SINE B2 2 192 -3 4 1124 921 244 38 9 chr9 70694796 70695007 -53381165 + ID_B1 SINE B4 7 223 -1 4 1124 325 116 14 14 chr9 70695016 70695086 -53381086 + (CTAA)n Simple_repeat Simple_repeat 3 72 0 4 1124 219 69 0 0 chr9 70695163 70695192 -53380980 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4 1124 747 201 28 7 chr9 70695196 70695341 -53380831 - B1_Mur1 SINE Alu 0 149 2 4 1124 22 35 0 0 chr9 70696614 70696643 -53379529 + AT_rich Low_complexity Low_complexity 1 29 0 4 1124 7498 54 6 1 chr9 70697253 70698213 -53377959 + L1_Mus1 LINE L1 5603 6567 0 4 1124 678 259 48 42 chr9 70698325 70698472 -53377700 + B3A SINE B2 28 180 -18 4 1124 216 0 0 0 chr9 70698472 70698496 -53377676 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1124 678 259 48 42 chr9 70698496 70698513 -53377659 + B3A SINE B2 181 193 -5 4 1124 345 244 232 0 chr9 70698719 70698801 -53377371 - PB1D10 SINE Alu -2 125 25 4 1124 306 314 166 0 chr9 70699323 70699498 -53376674 + MIRb SINE MIR 37 240 -28 4 1124 460 252 41 32 chr9 70700203 70700326 -53375846 + PB1 SINE Alu 2 125 -2 4 1124 231 88 0 0 chr9 70702269 70702303 -53373869 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1124 499 238 97 45 chr9 70702306 70702460 -53373712 + B4A SINE B4 3 164 -128 4 1124 360 0 0 0 chr9 70702518 70702558 -53373614 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1124 191 274 49 111 chr9 70702612 70702756 -53373416 + MIRc SINE MIR 16 150 -118 4 1124 1375 279 66 11 chr9 70702859 70703207 -53372965 - ORR1D2 LTR MaLR -3 367 1 4 1124 312 355 122 5 chr9 70703968 70704172 -53372000 - MIRb SINE MIR -1 267 40 4 1124 1226 213 67 0 chr9 70704696 70704935 -53371237 + B4A SINE B4 24 278 -14 4 1124 411 106 0 0 chr9 70704947 70705013 -53371159 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1124 267 297 97 59 chr9 70705015 70705201 -53370971 - Charlie4a DNA MER1_type -304 204 12 4 1124 273 219 40 14 chr9 70705338 70705412 -53370760 + MER53 DNA hAT 2 77 -116 4 1124 1076 82 0 33 chr9 70705442 70705594 -53370578 + B1_Mus1 SINE Alu 1 147 -1 4 1124 184 235 148 34 chr9 70705979 70706067 -53370105 + L2 LINE L2 2828 2925 -494 4 1124 24 32 0 0 chr9 70706283 70706314 -53369858 + AT_rich Low_complexity Low_complexity 1 31 0 4 1124 270 0 0 0 chr9 70706583 70706613 -53369559 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 4 1124 680 278 83 78 chr9 70706657 70706887 -53369285 - B4A SINE B4 -60 232 2 4 1124 570 340 50 17 chr9 70707017 70707256 -53368916 - Kanga1c DNA Tc2 -2 727 481 4 1124 487 271 12 56 chr9 70707453 70707613 -53368559 + RSINE1 SINE B4 3 155 -10 4 1124 384 77 0 0 chr9 70708042 70708094 -53368078 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1124 481 225 98 130 chr9 70708099 70708283 -53367889 - B3A SINE B2 -17 181 4 4 1124 207 88 0 0 chr9 70708521 70708555 -53367617 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1124 661 231 8 0 chr9 70708558 70708679 -53367493 - RSINE1 SINE B4 -41 124 3 4 1124 1042 117 0 0 chr9 70708713 70708858 -53367314 + B1_Mus1 SINE Alu 3 147 -1 4 1124 242 29 0 28 chr9 70709626 70709662 -53366510 + (TTA)n Simple_repeat Simple_repeat 3 37 0 4 1124 401 68 54 0 chr9 70709717 70709791 -53366381 + (TTA)n Simple_repeat Simple_repeat 2 79 0 4 1124 1372 221 7 3 chr9 70709795 70710093 -53366079 + MTD LTR MaLR 19 419 0 4 1124 383 228 149 20 chr9 70711273 70711421 -53364751 + Lx8 LINE L1 6841 7007 -466 4 1124 1017 234 176 55 chr9 70712506 70712836 -53363336 + MTE2a LTR MaLR 10 379 0 4 1124 623 284 60 25 chr9 70712839 70713038 -53363134 - ID_B1 SINE B4 -17 207 2 5 1124 684 213 63 57 chr9 70713497 70713656 -53362516 - B4 SINE B4 0 292 133 5 1124 562 146 7 35 chr9 70713748 70713890 -53362282 + CT-rich Low_complexity Low_complexity 1 138 0 5 1124 188 244 22 0 chr9 70714525 70714570 -53361602 - L2b LINE L2 -16 3359 3314 5 1124 1156 227 40 95 chr9 70714691 70715071 -53361101 - ORR1E LTR MaLR 0 359 1 5 1124 230 320 12 25 chr9 70715731 70715811 -53360361 - Arthur1B DNA Tip100 -1146 79 1 5 1124 300 252 74 116 chr9 70716806 70716927 -53359245 - PB1D10 SINE Alu -1 116 1 5 1124 269 259 129 82 chr9 70716927 70716954 -53359218 - B4 SINE B4 -189 103 70 5 1124 534 318 67 5 chr9 70717193 70717386 -53358786 - MER20 DNA MER1_type -14 205 1 5 1124 372 59 0 0 chr9 70717553 70717604 -53358568 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1124 581 50 25 0 chr9 70717698 70717778 -53358394 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 5 1124 822 289 17 68 chr9 70717795 70718032 -53358140 - B4A SINE B4 -64 228 4 5 1124 411 307 53 35 chr9 70718196 70718411 -53357761 + MIRb SINE MIR 11 228 -40 5 1124 2544 181 40 23 chr9 70719389 70719908 -53356264 + RLTR11A LTR ERVK 1 528 0 5 1124 265 321 104 30 chr9 70719908 70720043 -53356129 + MLT1F2 LTR MaLR 53 197 -351 5 1124 234 0 0 0 chr9 70720045 70720071 -53356101 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 5 1124 387 141 0 0 chr9 70720074 70720152 -53356020 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 1124 610 352 71 58 chr9 70720152 70720517 -53355655 + MLT1F2 LTR MaLR 179 548 -12 5 1124 360 323 93 25 chr9 70720740 70720902 -53355270 - Charlie13b DNA Charlie -87 425 253 5 1124 806 219 7 0 chr9 70721209 70721355 -53354817 + B1_Mur1 SINE Alu 2 148 -1 5 1124 613 304 13 0 chr9 70721378 70721536 -53354636 - RSINE1 SINE B4 -2 163 4 5 1124 496 282 141 0 chr9 70721565 70721707 -53354465 - RSINE1 SINE B4 0 165 4 5 1124 183 114 0 0 chr9 70721796 70721831 -53354341 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1124 841 263 0 6 chr9 70722341 70722521 -53353651 + B3A SINE B2 17 195 -3 5 1124 207 336 57 63 chr9 70724149 70724308 -53351864 + MIR SINE MIR 58 215 -47 5 1124 190 354 15 15 chr9 70725136 70725202 -53350970 + MIRm SINE MIR 211 276 0 5 1124 931 300 129 38 chr9 70725205 70725576 -53350596 + MTD LTR MaLR 1 405 -14 5 1124 349 308 30 30 chr9 70725652 70725786 -53350386 - MIR3 SINE MIR -7 201 68 5 1124 266 314 152 11 chr9 70726227 70726404 -53349768 - MIRb SINE MIR -16 252 51 5 1124 305 281 31 20 chr9 70726488 70726586 -53349586 + MamRep137 DNA TcMar? 182 280 -164 5 1124 256 376 20 0 chr9 70727055 70727156 -53349016 + MER81 DNA AcHobo 1 103 -11 5 1124 458 338 52 44 chr9 70728596 70728847 -53347325 + MIR SINE MIR 1 253 -9 5 1124 920 227 86 23 chr9 70728918 70729175 -53346997 - B4A SINE B4 -18 274 2 5 1124 459 0 0 0 chr9 70729557 70729608 -53346564 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1124 834 11 0 0 chr9 70729608 70729702 -53346470 + (GA)n Simple_repeat Simple_repeat 2 96 0 5 1124 242 297 14 0 chr9 70730171 70730245 -53345927 + (TATATG)n Simple_repeat Simple_repeat 1 75 0 5 1124 378 225 11 43 chr9 70730245 70730431 -53345741 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1124 198 303 66 22 chr9 70731078 70731169 -53345003 - MIRb SINE MIR -70 198 104 5 1124 245 348 0 0 chr9 70731708 70731863 -53344309 + (CTCA)n Simple_repeat Simple_repeat 4 158 0 5 1124 286 330 10 0 chr9 70732005 70732105 -53344067 - L1MC LINE L1 -2059 5823 5723 5 1124 448 266 116 35 chr9 70732128 70732327 -53343845 - B3 SINE B2 0 216 2 5 1124 219 36 0 0 chr9 70732375 70732403 -53343769 + (TAA)n Simple_repeat Simple_repeat 1 28 0 5 1124 261 0 0 0 chr9 70732405 70732434 -53343738 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1124 547 254 26 17 chr9 70732435 70732551 -53343621 - RSINE1 SINE B4 -41 124 8 5 1124 306 0 0 0 chr9 70734014 70734048 -53342124 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 5 1124 941 268 118 21 chr9 70734316 70734655 -53341517 + MTE2b LTR MaLR 5 376 -3 5 1124 890 273 65 39 chr9 70735059 70735432 -53340740 + Lx7 LINE L1 5626 5996 -1477 5 1124 3277 51 179 2 chr9 70735658 70736093 -53340079 - RLTR1B LTR ERV1 0 512 1 5 1124 303 317 73 42 chr9 70736749 70736932 -53339240 - MIRc SINE MIR -48 220 32 5 1124 358 319 0 0 chr9 70737525 70737619 -53338553 - PB1D10 SINE Alu -23 94 1 5 1124 309 28 0 0 chr9 70737634 70737670 -53338502 - HAL1-3A_ME LINE L1 -850 2008 1973 5 1124 761 19 37 0 chr9 70737697 70737804 -53338368 + (TATG)n Simple_repeat Simple_repeat 1 111 0 5 1124 486 329 42 7 chr9 70737804 70737948 -53338224 - RSINE1 SINE B4 -9 156 8 5 1124 263 296 91 10 chr9 70738216 70738315 -53337857 + MER34A LTR ERV1 465 571 0 5 1124 380 319 90 48 chr9 70738664 70738919 -53337253 + B4A SINE B4 15 292 0 5 1124 423 0 0 0 chr9 70738942 70738989 -53337183 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1124 337 286 18 37 chr9 70739142 70739251 -53336921 + MIRc SINE MIR 31 137 -131 5 1124 187 250 0 22 chr9 70739930 70739975 -53336197 + MIRb SINE MIR 36 79 -189 5 1124 1226 239 121 3 chr9 70739984 70740316 -53335856 + MTEa LTR MaLR 9 379 0 5 1124 380 315 9 35 chr9 70741056 70741171 -53335001 + PB1D10 SINE Alu 2 113 -4 5 1124 214 353 57 57 chr9 70741171 70741194 -53334978 + B4A SINE B4 87 224 -68 5 1124 481 241 65 60 chr9 70741921 70742106 -53334066 - MER5A DNA MER1_type -2 187 2 5 1124 651 270 51 0 chr9 70742443 70742580 -53333592 + RSINE1 SINE B4 2 145 -20 5 1124 447 130 0 0 chr9 70742584 70742661 -53333511 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1124 225 268 0 0 chr9 70742674 70742730 -53333442 + A-rich Low_complexity Low_complexity 3 58 0 5 1124 1081 260 173 0 chr9 70743375 70743698 -53332474 - MTEb LTR MaLR 0 379 1 5 1124 731 296 0 6 chr9 70744330 70744510 -53331662 + B3A SINE B2 2 180 -18 5 1124 189 0 0 0 chr9 70744513 70744534 -53331638 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1124 225 196 0 0 chr9 70744549 70744595 -53331577 + GA-rich Low_complexity Low_complexity 3 48 0 5 1124 1555 271 51 24 chr9 70744689 70745157 -53331015 + Lx6 LINE L1 6980 7460 0 5 1124 203 246 0 81 chr9 70745347 70745409 -53330763 - MIRm SINE MIR -103 173 117 5 1124 1256 90 26 36 chr9 70745855 70746017 -53330155 + B2_Mm2 SINE B2 2 161 -34 5 1124 180 0 0 0 chr9 70746017 70746037 -53330135 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1124 1256 90 26 36 chr9 70746037 70746069 -53330103 + B2_Mm2 SINE B2 162 194 -1 5 1124 313 328 93 122 chr9 70747957 70748047 -53328125 + MIRb SINE MIR 35 122 -146 5 1124 665 238 56 56 chr9 70748047 70748243 -53327929 - B3A SINE B2 -1 197 2 5 1124 313 330 94 119 chr9 70748243 70748386 -53327786 + MIRb SINE MIR 116 260 -2 5 1124 216 0 0 0 chr9 70748413 70748437 -53327735 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 1124 198 0 0 0 chr9 70748751 70748773 -53327399 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1124 307 130 0 42 chr9 70748794 70748842 -53327330 - HAL1-3A_ME LINE L1 -840 2018 1973 5 1124 209 57 0 28 chr9 70749272 70749308 -53326864 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1124 462 18 0 0 chr9 70749321 70749376 -53326796 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1124 465 19 0 0 chr9 70750335 70750389 -53325783 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1124 196 337 42 32 chr9 70750976 70751071 -53325101 + MIRc SINE MIR 10 105 -163 5 1124 35937 36 0 0 chr9 70751541 70756977 -53319195 + L1Md_T LINE L1 57 5589 -297 5 1124 9145 7 0 0 chr9 70756977 70757973 -53318199 + L1Md_T LINE L1 5590 6585 0 5 1124 282 235 0 0 chr9 70757978 70758029 -53318143 + B3A SINE B2 27 77 -121 5 1124 291 54 0 0 chr9 70758854 70758891 -53317281 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1124 306 85 16 33 chr9 70758892 70758953 -53317219 + (GGGAGA)n Simple_repeat Simple_repeat 3 62 0 5 1124 204 186 32 48 chr9 70760459 70760521 -53315651 + (CCAA)n Simple_repeat Simple_repeat 2 62 0 5 1124 335 36 271 0 chr9 70760559 70760699 -53315473 + (CAGC)n Simple_repeat Simple_repeat 1 178 0 5 1124 368 0 14 153 chr9 70760613 70760822 -53315350 + (CACAG)n Simple_repeat Simple_repeat 1 180 0 5 1124 408 308 0 37 chr9 70761484 70761592 -53314580 + MER58A DNA MER1_type 33 136 -88 5 1124 673 148 78 49 chr9 70761879 70762021 -53314151 + B1_Mus2 SINE Alu 2 147 0 5 1124 347 355 127 31 chr9 70762040 70762078 -53314094 - MER63D DNA AcHobo -739 322 290 5 1124 545 209 0 26 chr9 70762078 70762191 -53313981 - PB1D10 SINE Alu -7 110 1 5 1124 347 355 127 31 chr9 70762191 70762411 -53313761 - MER63D DNA AcHobo -772 289 39 5 1124 259 211 36 55 chr9 70763252 70763307 -53312865 + tRNA-Ile-ATA tRNA tRNA 1 54 -23 5 1124 353 239 101 0 chr9 70763646 70763755 -53312417 - B3 SINE B2 -2 214 95 5 1124 255 256 117 43 chr9 70763754 70763848 -53312324 + MTEa LTR MaLR 266 366 -13 5 1124 330 26 0 0 chr9 70764049 70764088 -53312084 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 5 1124 211 346 64 0 chr9 70764898 70764976 -53311196 + L2b LINE L2 3276 3358 -17 5 1124 540 0 0 0 chr9 70765124 70765184 -53310988 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1124 252 355 93 9 chr9 70765630 70765738 -53310434 + MIRb SINE MIR 23 139 -129 5 1124 342 312 0 47 chr9 70765740 70765888 -53310284 + Lx8 LINE L1 7331 7471 -2 5 1124 300 250 186 70 chr9 70765917 70766046 -53310126 + B4A SINE B4 144 287 -5 6 1124 360 64 0 0 chr9 70766076 70766123 -53310049 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1124 442 335 32 32 chr9 70766863 70767020 -53309152 + MER5A1 DNA MER1_type 10 166 0 6 1124 3343 176 83 2 chr9 70767474 70768089 -53308083 + Lx5 LINE L1 6379 7043 -7 6 1124 698 314 92 20 chr9 70768512 70768762 -53307410 + B4A SINE B4 24 291 -1 6 1124 219 250 19 0 chr9 70768772 70768824 -53307348 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1124 186 208 0 0 chr9 70768868 70768916 -53307256 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1124 459 0 0 0 chr9 70768963 70769014 -53307158 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1124 273 331 69 23 chr9 70769246 70769419 -53306753 - MIRb SINE MIR -63 205 25 6 1124 288 236 0 0 chr9 70769477 70769566 -53306606 + (TG)n Simple_repeat Simple_repeat 1 89 0 6 1124 736 283 57 29 chr9 70769566 70769846 -53306326 - B4 SINE B4 0 292 5 6 1124 536 206 8 0 chr9 70770667 70770798 -53305374 + GA-rich Low_complexity Low_complexity 2 133 0 6 1124 674 223 7 51 chr9 70770915 70771052 -53305120 + B4 SINE B4 158 288 -4 6 1124 397 313 75 0 chr9 70771151 70771298 -53304874 + MLT1B LTR MaLR 233 390 0 6 1124 1232 252 45 19 chr9 70771536 70771848 -53304324 + MTE2b LTR MaLR 60 379 0 6 1124 187 395 15 15 chr9 70772438 70772569 -53303603 + MIRb SINE MIR 42 172 -96 6 1124 1019 215 49 0 chr9 70772640 70772845 -53303327 + B3 SINE B2 2 216 0 6 1124 280 247 14 0 chr9 70773618 70773691 -53302481 + ID2 SINE ID 6 79 -4 6 1124 1207 208 124 35 chr9 70774023 70774371 -53301801 + MTEa LTR MaLR 1 379 0 6 1124 983 222 16 0 chr9 70775097 70775282 -53300890 + B3 SINE B2 1 188 -28 6 1124 450 0 0 0 chr9 70775288 70775338 -53300834 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1124 252 224 35 0 chr9 70776049 70776107 -53300065 + RMER15 LTR ERVL 403 462 -113 6 1124 1113 78 0 19 chr9 70776143 70776408 -53299764 + (CA)n Simple_repeat Simple_repeat 1 259 0 6 1124 2103 111 65 24 chr9 70776662 70777002 -53299170 + ORR1B1 LTR MaLR 41 394 0 6 1124 339 188 66 66 chr9 70777108 70777199 -53298973 + MTE2a LTR MaLR 3 93 -286 6 1124 411 21 0 0 chr9 70777214 70777262 -53298910 + (TATG)n Simple_repeat Simple_repeat 4 51 0 6 1124 816 232 17 0 chr9 70777265 70777442 -53298730 - B3A SINE B2 -18 180 1 6 1125 285 183 0 0 chr9 70779219 70779279 -53296893 + CT-rich Low_complexity Low_complexity 4 63 0 6 1125 210 244 13 20 chr9 70779845 70779996 -53296176 + CT-rich Low_complexity Low_complexity 1 150 0 6 1125 838 284 47 124 chr9 70780298 70780828 -53295344 - MER97a DNA MER1_type? -18 876 388 6 1125 1973 102 11 0 chr9 70780973 70781258 -53294914 + L1_Mur2 LINE L1 3634 3921 -1956 6 1125 223 255 0 0 chr9 70781260 70781307 -53294865 - B3A SINE B2 -150 48 2 6 1125 213 267 87 22 chr9 70781350 70781437 -53294735 + PB1D10 SINE Alu 15 108 -9 6 1125 654 13 0 0 chr9 70781437 70781512 -53294660 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 6 1125 532 319 116 35 chr9 70783179 70783358 -53292814 - L2a LINE L2 -12 3414 3224 6 1125 977 223 68 0 chr9 70783358 70783564 -53292608 + ID_B1 SINE B4 3 222 -2 6 1125 532 319 116 35 chr9 70783564 70783780 -53292392 - L2a LINE L2 -203 3223 2987 6 1125 257 299 63 37 chr9 70783997 70784188 -53291984 - L2a LINE L2 -812 2607 2412 6 1125 738 305 58 18 chr9 70784262 70784536 -53291636 + B4A SINE B4 2 286 -6 6 1125 451 264 215 14 chr9 70785170 70785393 -53290779 - Lx8 LINE L1 -22 7451 7184 6 1125 525 276 0 0 chr9 70785378 70785505 -53290667 + Lx8 LINE L1 6319 6445 -1028 6 1125 216 0 0 0 chr9 70785776 70785800 -53290372 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 6 1125 450 36 0 0 chr9 70786274 70786330 -53289842 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1125 591 167 7 14 chr9 70786560 70786700 -53289472 + CT-rich Low_complexity Low_complexity 4 142 0 6 1125 428 279 116 32 chr9 70786713 70786902 -53289270 - ID_B1 SINE B4 -18 206 2 6 1125 948 289 20 27 chr9 70787291 70787583 -53288589 - B4 SINE B4 0 292 3 6 1125 180 0 0 0 chr9 70787857 70787877 -53288295 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 6 1125 525 277 34 0 chr9 70787966 70788114 -53288058 - RSINE1 SINE B4 -2 163 11 6 1125 1299 142 71 0 chr9 70788450 70788661 -53287511 + URR1A DNA MER1_type 1 226 0 6 1125 414 85 0 0 chr9 70789582 70789641 -53286531 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1125 384 22 0 0 chr9 70789806 70789851 -53286321 + (TATG)n Simple_repeat Simple_repeat 2 46 0 6 1125 736 232 0 0 chr9 70790020 70790158 -53286014 + RSINE1 SINE B4 3 140 -25 6 1125 650 294 30 30 chr9 70790151 70790386 -53285786 - MTD LTR MaLR -184 235 1 6 1125 501 213 30 69 chr9 70790779 70790910 -53285262 + MTEa LTR MaLR 6 131 -248 6 1125 706 251 58 55 chr9 70791382 70791735 -53284437 - MTE2a LTR MaLR -83 336 1 6 1125 348 24 0 0 chr9 70791747 70791788 -53284384 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1125 967 232 25 64 chr9 70792826 70793107 -53283065 + Lx8 LINE L1 7202 7471 -2 6 1125 266 203 12 98 chr9 70793041 70793123 -53283049 + RMER1C Other Other 1260 1334 -8 6 1125 994 212 34 19 chr9 70793430 70793637 -53282535 - B3 SINE B2 -5 211 2 6 1125 311 0 26 0 chr9 70793978 70794017 -53282155 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1125 560 283 45 67 chr9 70795042 70795311 -53280861 + ORR1E LTR MaLR 8 270 -89 6 1125 369 0 0 0 chr9 70795445 70795486 -53280686 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1125 243 88 0 0 chr9 70795675 70795709 -53280463 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 6 1125 361 406 31 14 chr9 70795735 70796025 -53280147 - L1M5 LINE L1 -598 5642 5348 6 1125 211 273 0 0 chr9 70796601 70796656 -53279516 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1125 219 212 189 137 chr9 70796790 70796813 -53279359 - B2_Mm2 SINE B2 -9 186 167 6 1125 659 93 15 30 chr9 70796813 70796946 -53279226 + (TG)n Simple_repeat Simple_repeat 2 132 0 6 1125 490 212 189 137 chr9 70796946 70797097 -53279075 - B3A SINE B2 -30 168 3 6 1125 389 308 74 92 chr9 70797161 70797497 -53278675 - ORR1E LTR MaLR -8 351 22 6 1125 797 267 11 0 chr9 70797791 70797967 -53278205 - B3A SINE B2 -19 179 2 6 1125 231 225 162 0 chr9 70798415 70798495 -53277677 - L1MC4 LINE L1 -152 7890 7798 6 1125 704 209 14 14 chr9 70798517 70798658 -53277514 + B3A SINE B2 1 141 -57 6 1125 1701 208 47 26 chr9 70798669 70799050 -53277122 - MTD LTR MaLR -21 398 10 6 1125 207 0 0 0 chr9 70799102 70799125 -53277047 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1125 224 345 17 33 chr9 70800715 70800835 -53275337 + MIRb SINE MIR 12 129 -139 6 1125 818 288 49 28 chr9 70801285 70801571 -53274601 - B4 SINE B4 0 292 1 6 1125 288 0 0 0 chr9 70803200 70803232 -53272940 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1125 601 215 36 15 chr9 70803237 70803374 -53272798 - L1M2 LINE L1 -655 5636 5497 6 1125 618 262 114 33 chr9 70803715 70803960 -53272212 + B4A SINE B4 28 292 0 6 1125 966 173 4 4 chr9 70803961 70805208 -53270964 + (CA)n Simple_repeat Simple_repeat 1 1246 0 6 1125 320 231 138 46 chr9 70805351 70805460 -53270712 + PB1D7 SINE Alu 1 119 -1 6 1125 1188 251 93 0 chr9 70806498 70806841 -53269331 - MTEb LTR MaLR -4 375 1 6 1125 1018 245 50 18 chr9 70807236 70807518 -53268654 - B4A SINE B4 -1 291 1 6 1125 1126 254 7 20 chr9 70808722 70809016 -53267156 + B4A SINE B4 3 292 0 6 1125 390 188 0 0 chr9 70809062 70809163 -53267009 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 1125 960 201 17 11 chr9 70809169 70809198 -53266974 - B3A SINE B2 -16 182 155 6 1125 476 32 16 0 chr9 70809198 70809260 -53266912 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1125 960 201 17 11 chr9 70809260 70809411 -53266761 - B3A SINE B2 -44 154 1 6 1125 189 171 0 0 chr9 70809534 70809569 -53266603 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1125 881 219 0 24 chr9 70810076 70810244 -53265928 + RSINE1 SINE B4 2 165 0 6 1125 233 338 78 14 chr9 70810429 70810570 -53265602 - MER5A DNA MER1_type -18 171 22 6 1125 599 286 31 11 chr9 70810699 70810866 -53265306 + B3A SINE B2 4 173 -25 6 1125 468 0 0 0 chr9 70810866 70810918 -53265254 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1125 599 286 31 11 chr9 70810918 70810941 -53265231 + B3A SINE B2 174 198 0 6 1125 435 38 0 0 chr9 70811497 70811550 -53264622 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1125 848 281 45 30 chr9 70811823 70812091 -53264081 + B4 SINE B4 5 276 -16 6 1125 405 0 0 0 chr9 70812091 70812136 -53264036 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1125 894 108 22 0 chr9 70812717 70812856 -53263316 - B1_Mus1 SINE Alu -1 147 6 6 1125 1003 264 62 33 chr9 70813524 70813974 -53262198 - RLTR12B LTR ERVK -19 509 47 6 1125 546 223 14 61 chr9 70813999 70814147 -53262025 - B3A SINE B2 -57 141 1 6 1125 429 20 0 0 chr9 70815345 70815395 -53260777 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1125 239 356 65 39 chr9 70815421 70815576 -53260596 - B4 SINE B4 -117 175 17 6 1125 360 212 0 0 chr9 70815861 70815993 -53260179 + GA-rich Low_complexity Low_complexity 1 132 0 6 1125 260 270 85 62 chr9 70816250 70816380 -53259792 - MER20 DNA MER1_type -79 140 8 6 1125 216 158 0 0 chr9 70817608 70817646 -53258526 + (TAA)n Simple_repeat Simple_repeat 3 40 0 6 1125 180 216 0 0 chr9 70818236 70818287 -53257885 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1125 437 219 171 6 chr9 70818477 70818647 -53257525 - L1MA9 LINE L1 -378 5934 5737 7 1125 2433 74 9 61 chr9 70818729 70819074 -53257098 + ORR1A2 LTR MaLR 1 327 0 7 1125 889 270 68 25 chr9 70820233 70820559 -53255613 - RMER5 LTR ERV1 0 534 195 7 1125 519 243 31 117 chr9 70820568 70820764 -53255408 + B3A SINE B2 1 179 -19 7 1125 544 250 20 34 chr9 70820789 70820938 -53255234 - RMER12 LTR ERVK -31 1291 1145 7 1125 3489 215 104 127 chr9 70821224 70822809 -53253363 - RLTR22_Mur LTR ERVK -185 1663 116 7 1125 2096 179 72 21 chr9 70822809 70823201 -53252971 + RLTR20D LTR ERVK 1 463 -105 7 1125 387 0 0 0 chr9 70823201 70823244 -53252928 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1125 2096 146 50 0 chr9 70823244 70823334 -53252838 + RLTR20D LTR ERVK 464 567 -1 7 1125 408 241 60 0 chr9 70823334 70823450 -53252722 - RMER12 LTR ERVK -1199 123 1 7 1125 576 201 133 25 chr9 70823488 70823646 -53252526 - RMER5 LTR ERV1 -320 214 40 7 1125 1569 209 150 67 chr9 70824261 70824300 -53251872 - MT2A LTR ERVL 0 533 495 7 1125 180 0 0 0 chr9 70824300 70824320 -53251852 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1125 1569 209 150 67 chr9 70824320 70824772 -53251400 - MT2A LTR ERVL -39 494 1 7 1125 21 0 0 0 chr9 70824905 70824926 -53251246 + AT_rich Low_complexity Low_complexity 1 21 0 7 1125 564 220 50 64 chr9 70824974 70825115 -53251057 + B1_Mur1 SINE Alu 1 139 -10 7 1125 1113 268 94 22 chr9 70825519 70825977 -53250195 + L1MA6 LINE L1 5415 5905 -395 7 1125 1354 253 22 31 chr9 70826952 70827307 -53248865 - ORR1E LTR MaLR -5 354 3 7 1125 343 247 65 0 chr9 70827719 70827796 -53248376 + ID4 SINE ID 1 82 -1 7 1125 2955 162 35 26 chr9 70828308 70828846 -53247326 - Lx4B LINE L1 0 7058 6516 7 1125 2303 117 47 0 chr9 70828846 70829205 -53246967 + Lx4A LINE L1 5801 6176 -882 7 1125 642 279 230 25 chr9 70829240 70829479 -53246693 + B4 SINE B4 3 290 -2 7 1125 396 0 0 0 chr9 70829506 70829550 -53246622 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1125 516 291 74 44 chr9 70829567 70829865 -53246307 - L1MC1 LINE L1 -66 6267 5961 7 1125 3306 170 134 23 chr9 70830524 70831258 -53244914 - RMER1B Other Other -11 1055 186 7 1125 437 374 0 0 chr9 70831328 70831507 -53244665 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1125 397 333 0 60 chr9 70831510 70831676 -53244496 - B3 SINE B2 -14 202 47 7 1125 442 196 179 0 chr9 70831700 70831812 -53244360 - ORR1E LTR MaLR -227 132 1 7 1125 658 320 95 45 chr9 70831814 70832194 -53243978 + MLT1C LTR MaLR 63 461 -6 7 1125 351 44 0 0 chr9 70832215 70832260 -53243912 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1125 791 236 13 0 chr9 70832276 70832433 -53243739 - B3A SINE B2 -38 160 2 7 1125 212 284 95 0 chr9 70832452 70832526 -53243646 + L2a LINE L2 3314 3394 -32 7 1125 227 386 34 14 chr9 70832657 70832804 -53243368 - MIRb SINE MIR -85 183 34 7 1125 592 282 76 15 chr9 70832996 70833194 -53242978 - RMER15 LTR ERVL -146 429 220 7 1125 1627 165 37 55 chr9 70833208 70833535 -53242637 + ORR1A4 LTR MaLR 1 321 -8 7 1125 1003 199 146 18 chr9 70833632 70833852 -53242320 + MTD LTR MaLR 130 377 -42 7 1125 637 230 8 0 chr9 70833879 70834005 -53242167 - MTD LTR MaLR -292 127 1 7 1125 1446 35 0 0 chr9 70835747 70836182 -53239990 + (CTGTG)n Simple_repeat Simple_repeat 1 435 0 7 1125 735 123 6 18 chr9 70836182 70836193 -53239979 + (TCCTG)n Simple_repeat Simple_repeat 5 14 0 7 1125 1124 79 6 0 chr9 70836193 70836371 -53239801 + (CTGTG)n Simple_repeat Simple_repeat 2 180 0 7 1125 735 123 6 18 chr9 70836371 70836402 -53239770 + (TCCTG)n Simple_repeat Simple_repeat 4 34 0 7 1125 1359 50 0 0 chr9 70836402 70836582 -53239590 + (CTGTG)n Simple_repeat Simple_repeat 1 180 0 7 1125 735 123 6 18 chr9 70836582 70836703 -53239469 + (TCCTG)n Simple_repeat Simple_repeat 2 123 0 7 1125 396 0 0 0 chr9 70836700 70836744 -53239428 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1125 258 32 0 0 chr9 70836744 70836775 -53239397 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1125 423 0 0 0 chr9 70837322 70837369 -53238803 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1125 585 42 0 0 chr9 70837888 70837960 -53238212 + (CAT)n Simple_repeat Simple_repeat 2 73 0 7 1125 268 200 63 9 chr9 70839732 70839878 -53236294 + (TA)n Simple_repeat Simple_repeat 1 153 0 7 1125 735 161 154 46 chr9 70839888 70839929 -53236243 - B3 SINE B2 0 216 176 7 1125 348 24 0 0 chr9 70839929 70839970 -53236202 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1125 735 161 154 46 chr9 70839970 70840123 -53236049 - B3 SINE B2 -41 175 1 7 1125 189 0 0 0 chr9 70840861 70840882 -53235290 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 7 1125 472 200 0 11 chr9 70840893 70841070 -53235102 + GA-rich Low_complexity Low_complexity 2 176 0 7 1125 441 0 0 0 chr9 70841712 70841761 -53234411 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1125 343 215 51 0 chr9 70841832 70841911 -53234261 + MTEb LTR MaLR 1 83 -296 7 1125 586 222 134 65 chr9 70841926 70842143 -53234029 + MTEb LTR MaLR 143 374 -5 7 1125 432 196 134 59 chr9 70842257 70842376 -53233796 - RSINE1 SINE B4 -35 130 3 7 1125 263 282 175 44 chr9 70842674 70842811 -53233361 + Charlie5 DNA MER1_type 23 177 -2447 7 1125 305 300 8 98 chr9 70842858 70842980 -53233192 + L2a LINE L2 3315 3425 -1 7 1125 246 341 65 18 chr9 70843017 70843187 -53232985 - L1M5 LINE L1 -414 5710 5533 7 1125 1069 254 71 23 chr9 70843418 70843594 -53232578 + B4A SINE B4 10 203 -89 7 1125 3095 20 0 6 chr9 70843594 70843942 -53232230 + ORR1A0 LTR MaLR 1 346 0 7 1125 1069 254 71 23 chr9 70843942 70844031 -53232141 + B4A SINE B4 204 288 -4 7 1125 252 277 10 50 chr9 70843987 70844086 -53232086 + B3 SINE B2 122 216 0 7 1125 273 226 52 29 chr9 70844772 70844945 -53231227 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 7 1125 234 0 0 0 chr9 70844983 70845009 -53231163 + (TATG)n Simple_repeat Simple_repeat 2 27 0 7 1125 674 24 12 0 chr9 70845029 70845113 -53231059 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 7 1125 882 207 237 38 chr9 70845775 70846091 -53230081 + MTEa LTR MaLR 1 379 0 7 1125 417 260 78 7 chr9 70846194 70846344 -53229828 + MIR3 SINE MIR 1 171 -37 7 1125 191 295 92 40 chr9 70847311 70847491 -53228681 + MIRb SINE MIR 50 242 -26 7 1125 1082 243 8 50 chr9 70847756 70848016 -53228156 - B4 SINE B4 -42 250 2 7 1125 258 32 0 0 chr9 70848117 70848148 -53228024 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 7 1125 732 302 6 0 chr9 70849256 70849435 -53226737 - B3A SINE B2 -18 180 1 7 1125 739 194 16 8 chr9 70849953 70850203 -53225969 + (TATG)n Simple_repeat Simple_repeat 1 252 0 7 1125 323 277 0 7 chr9 70850183 70850321 -53225851 + (TA)n Simple_repeat Simple_repeat 2 138 0 7 1125 744 286 85 7 chr9 70850326 70850597 -53225575 - B4A SINE B4 0 292 1 7 1125 234 311 21 53 chr9 70850666 70850761 -53225411 + L2c LINE L2 3216 3307 -80 7 1125 287 315 80 47 chr9 70850787 70850937 -53225235 + ORSL DNA Tip100 33 187 -88 7 1125 352 306 107 21 chr9 70852416 70852603 -53223569 - L2c LINE L2 -64 3323 3121 7 1125 440 183 11 0 chr9 70852663 70852756 -53223416 + GA-rich Low_complexity Low_complexity 3 96 0 7 1125 579 269 58 1 chr9 70852785 70852927 -53223245 + B3A SINE B2 12 164 -52 7 1125 441 0 0 0 chr9 70852927 70852976 -53223196 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1125 378 0 0 0 chr9 70852976 70853017 -53223155 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 1125 521 293 77 30 chr9 70853017 70853042 -53223130 + B3 SINE B2 165 187 -29 7 1125 205 161 0 0 chr9 70853376 70853407 -53222765 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1125 243 273 63 25 chr9 70853513 70853592 -53222580 - ORR1D2 LTR MaLR -283 87 6 7 1125 368 297 73 44 chr9 70853787 70853991 -53222181 + B4 SINE B4 8 217 -75 7 1125 390 185 0 0 chr9 70854050 70854131 -53222041 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1125 318 50 0 0 chr9 70855836 70855876 -53220296 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1125 580 246 104 0 chr9 70855877 70856011 -53220161 - B3A SINE B2 -50 148 1 7 1125 240 270 31 16 chr9 70856018 70856082 -53220090 - B4 SINE B4 -68 224 160 7 1125 820 311 21 8 chr9 70856066 70856335 -53219837 - B4 SINE B4 -23 269 3 7 1125 1039 274 40 48 chr9 70857075 70857454 -53218718 + MLT1B LTR MaLR 13 388 -2 7 1125 1807 191 80 5 chr9 70857665 70858054 -53218118 + MTD LTR MaLR 2 419 0 7 1125 420 287 163 0 chr9 70858174 70858376 -53217796 - LTR75 LTR ERVL -300 262 28 7 1125 258 262 0 70 chr9 70858513 70858597 -53217575 + MLT1A LTR MaLR 34 111 -263 7 1125 894 216 0 0 chr9 70858597 70858750 -53217422 + RSINE1 SINE B4 3 155 -10 7 1125 699 12 0 0 chr9 70858756 70858836 -53217336 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 7 1125 422 291 102 29 chr9 70858839 70859082 -53217090 + MLT1A LTR MaLR 79 380 -28 7 1125 367 298 134 7 chr9 70859262 70859539 -53216633 + L1ME2z LINE L1 5851 6162 -282 7 1125 402 21 0 0 chr9 70859648 70859695 -53216477 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1125 327 49 0 0 chr9 70859785 70859826 -53216346 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1125 1074 239 38 19 chr9 70859838 70860102 -53216070 - B4 SINE B4 -21 271 3 7 1125 315 350 65 0 chr9 70860193 70860316 -53215856 - L1M5 LINE L1 -404 5720 5590 7 1125 347 360 57 32 chr9 70860389 70860547 -53215625 - L1M5 LINE L1 -724 5449 5288 7 1125 317 43 0 21 chr9 70860795 70860843 -53215329 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 7 1125 269 312 12 0 chr9 70860974 70861054 -53215118 + MER33 DNA MER1_type 21 101 -223 7 1125 550 263 204 30 chr9 70861171 70861441 -53214731 - Lx8 LINE L1 -5 7468 7152 7 1125 625 305 144 28 chr9 70861766 70862164 -53214008 - LTR16A LTR ERVL -2 449 6 7 1125 590 225 149 17 chr9 70862334 70862517 -53213655 + ID_B1 SINE B4 4 227 -65 8 1125 1073 215 57 137 chr9 70862634 70863006 -53213166 - MTE2a LTR MaLR 0 379 38 8 1125 264 280 168 45 chr9 70863137 70863339 -53212833 + MIR SINE MIR 16 245 -23 8 1125 1307 90 6 0 chr9 70863568 70863745 -53212427 + B2_Mm1a SINE B2 2 179 -14 8 1125 432 0 0 0 chr9 70864345 70864393 -53211779 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1125 779 263 34 34 chr9 70864663 70864868 -53211304 + B4A SINE B4 3 207 -85 8 1125 498 86 0 0 chr9 70864892 70864973 -53211199 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1125 360 0 0 0 chr9 70864973 70865012 -53211160 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 1125 628 227 25 49 chr9 70865450 70865612 -53210560 - RSINE1 SINE B4 -5 160 3 8 1125 183 250 0 37 chr9 70865622 70865676 -53210496 - MER5B DNA MER1_type -124 54 3 8 1125 351 292 90 23 chr9 70865823 70865956 -53210216 + MIRb SINE MIR 96 237 -31 8 1125 911 232 5 21 chr9 70866716 70866905 -53209267 + B3A SINE B2 13 198 0 8 1125 33 66 0 0 chr9 70866909 70866970 -53209202 + AT_rich Low_complexity Low_complexity 1 61 0 8 1125 267 211 0 0 chr9 70867537 70867589 -53208583 + URR1B DNA MER1_type 1 52 -173 8 1125 225 295 62 21 chr9 70867756 70867853 -53208319 + L1MD3 LINE L1 7299 7399 -386 8 1125 307 323 10 10 chr9 70867916 70868016 -53208156 + L1MD3 LINE L1 7659 7758 -237 8 1125 7521 93 40 7 chr9 70868025 70869521 -53206651 + Lx LINE L1 5108 6654 0 8 1125 839 130 61 8 chr9 70869629 70869761 -53206411 + B1_Mur1 SINE Alu 9 147 -2 8 1125 885 17 17 17 chr9 70869805 70869925 -53206247 + (TCTA)n Simple_repeat Simple_repeat 2 121 0 8 1125 263 335 91 21 chr9 70869973 70870159 -53206013 + MIRb SINE MIR 65 263 -5 8 1125 698 239 94 6 chr9 70870310 70870491 -53205681 - B3A SINE B2 -1 197 1 8 1125 303 306 95 22 chr9 70871244 70871381 -53204791 + MIRb SINE MIR 111 257 -11 8 1125 394 308 19 89 chr9 70871384 70871541 -53204631 + RSINE1 SINE B4 3 148 -17 8 1125 396 0 0 0 chr9 70871552 70871596 -53204576 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 8 1125 504 215 174 0 chr9 70871734 70871855 -53204317 + B3A SINE B2 1 142 -56 8 1125 189 0 0 0 chr9 70871871 70871892 -53204280 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1125 924 142 0 7 chr9 70871979 70872121 -53204051 + B1_Mur4 SINE Alu 5 145 -5 8 1125 602 43 43 0 chr9 70872127 70872221 -53203951 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 8 1125 228 67 0 0 chr9 70872262 70872292 -53203880 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1125 542 194 10 0 chr9 70872992 70873095 -53203077 + B3 SINE B2 113 216 0 8 1125 236 278 0 27 chr9 70873453 70873527 -53202645 - HAL1 LINE L1 -743 1764 1693 8 1125 25 0 0 0 chr9 70873930 70873955 -53202217 + AT_rich Low_complexity Low_complexity 1 25 0 8 1125 946 155 0 19 chr9 70874087 70874346 -53201826 + CT-rich Low_complexity Low_complexity 1 253 0 8 1125 567 316 26 13 chr9 70875039 70875193 -53200979 + RSINE1 SINE B4 2 157 -8 8 1125 351 0 0 0 chr9 70875196 70875235 -53200937 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1125 222 128 0 0 chr9 70875237 70875276 -53200896 + (ATG)n Simple_repeat Simple_repeat 1 39 0 8 1125 290 224 0 33 chr9 70876702 70876762 -53199410 + PB1D9 SINE Alu 2 59 -61 8 1125 275 163 0 0 chr9 70876762 70876877 -53199295 + (CAGAGA)n Simple_repeat Simple_repeat 1 115 0 8 1125 603 194 0 18 chr9 70876880 70876990 -53199182 + B1_Mur3 SINE Alu 42 149 0 8 1125 531 153 0 27 chr9 70877028 70877176 -53198996 + GA-rich Low_complexity Low_complexity 4 147 0 8 1125 525 32 0 0 chr9 70877417 70877480 -53198692 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1125 185 287 27 82 chr9 70877936 70878046 -53198126 + L2c LINE L2 3243 3346 -41 8 1125 423 304 38 0 chr9 70878426 70878584 -53197588 + MLT2B1 LTR ERVL 1 164 -356 8 1125 180 0 0 0 chr9 70878646 70878666 -53197506 + (CTTG)n Simple_repeat Simple_repeat 1 20 0 8 1125 296 269 25 25 chr9 70878666 70878746 -53197426 - MTEb LTR MaLR -189 190 111 8 1125 251 127 0 164 chr9 70878772 70878980 -53197192 + GA-rich Low_complexity Low_complexity 3 176 0 8 1125 386 263 56 70 chr9 70878991 70879014 -53197158 - MT2A LTR ERVL -392 141 1 8 1125 531 200 67 0 chr9 70879014 70879134 -53197038 - MTEb LTR MaLR -251 128 1 8 1125 556 265 36 76 chr9 70879254 70879478 -53196694 - L1MA4A LINE L1 -373 5930 5684 8 1125 23 54 0 0 chr9 70879606 70879643 -53196529 + AT_rich Low_complexity Low_complexity 1 37 0 8 1125 492 265 101 13 chr9 70879672 70879821 -53196351 - B3A SINE B2 -36 162 1 8 1125 861 251 12 0 chr9 70879868 70880035 -53196137 - B3A SINE B2 -28 170 2 8 1125 265 124 75 30 chr9 70880636 70880769 -53195403 + GA-rich Low_complexity Low_complexity 1 139 0 8 1125 857 287 76 41 chr9 70881173 70881545 -53194627 + MTD LTR MaLR 1 379 0 8 1125 231 301 90 78 chr9 70881545 70881610 -53194562 - MER2 DNA MER2_type -90 255 191 8 1125 4189 36 2 6 chr9 70881610 70882111 -53194061 - L1Md_F2 LINE L1 0 6582 6084 8 1125 231 301 90 78 chr9 70882111 70882203 -53193969 - MER2 DNA MER2_type -155 190 96 8 1125 680 262 51 9 chr9 70882368 70882584 -53193588 + Lx8 LINE L1 6142 6366 -1107 8 1125 2012 118 86 15 chr9 70882588 70882915 -53193257 - ORR1B1 LTR MaLR -4 390 41 8 1125 503 248 79 20 chr9 70882922 70883061 -53193111 + Lx8 LINE L1 6362 6509 -964 8 1125 573 15 0 0 chr9 70883061 70883127 -53193045 + (GGA)n Simple_repeat Simple_repeat 3 68 0 8 1125 503 248 79 20 chr9 70883127 70883139 -53193033 + Lx8 LINE L1 6510 6522 -951 8 1125 211 180 20 20 chr9 70883168 70883219 -53192953 + CT-rich Low_complexity Low_complexity 2 52 0 8 1125 879 145 0 6 chr9 70883704 70883864 -53192308 + Lx2B LINE L1 6842 7000 0 8 1125 369 75 0 0 chr9 70884079 70884132 -53192040 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1125 306 0 0 0 chr9 70884132 70884165 -53192007 + (GA)n Simple_repeat Simple_repeat 2 35 0 8 1125 341 308 142 29 chr9 70884253 70884457 -53191715 - L1M5 LINE L1 -2988 3158 2932 8 1125 348 283 0 42 chr9 70884680 70884798 -53191374 + PB1D10 SINE Alu 1 113 -4 8 1125 268 318 0 18 chr9 70884930 70885042 -53191130 + (TATATG)n Simple_repeat Simple_repeat 3 112 0 8 1125 230 198 11 42 chr9 70885055 70885150 -53191022 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 8 1125 244 326 54 0 chr9 70885272 70885364 -53190808 - LTR41 LTR ERVL -551 217 121 8 1125 618 292 34 58 chr9 70885707 70885914 -53190258 - B3A SINE B2 0 216 15 8 1125 615 325 109 0 chr9 70886466 70886576 -53189596 + MLT1B LTR MaLR 74 183 -207 8 1125 581 280 113 23 chr9 70886576 70886832 -53189340 + B4A SINE B4 2 280 -12 8 1125 615 325 109 0 chr9 70886832 70887004 -53189168 + MLT1B LTR MaLR 184 386 -4 8 1125 1054 264 35 32 chr9 70887868 70888181 -53187991 - MTD LTR MaLR -105 314 1 8 1125 771 304 113 21 chr9 70888181 70888507 -53187665 + RMER5 LTR ERV1 121 476 -58 8 1125 262 241 73 12 chr9 70888750 70888841 -53187331 - ORR1D2 LTR MaLR -7 372 278 8 1125 529 272 7 7 chr9 70889218 70889355 -53186817 - RSINE1 SINE B4 -17 148 12 8 1125 502 257 51 51 chr9 70890234 70890390 -53185782 - RSINE1 SINE B4 0 165 10 8 1125 260 141 60 45 chr9 70890762 70890829 -53185343 - ORR1E LTR MaLR 0 379 312 8 1125 381 318 21 104 chr9 70890952 70891091 -53185081 - ORR1E LTR MaLR -210 149 14 8 1125 5174 68 1 16 chr9 70891091 70891776 -53184396 - L1Md_F2 LINE L1 0 6582 5908 8 1125 865 224 112 31 chr9 70891779 70892037 -53184135 + MTE2b LTR MaLR 18 296 -83 8 1125 303 348 70 23 chr9 70892037 70892296 -53183876 - L1M4 LINE L1 -758 5686 5416 8 1125 1083 251 42 106 chr9 70892328 70892733 -53183439 + MTE2a LTR MaLR 1 379 0 8 1125 432 256 143 9 chr9 70892770 70892919 -53183253 - L1M4 LINE L1 -847 5299 5145 8 1125 423 0 0 0 chr9 70892919 70892966 -53183206 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1125 432 236 156 9 chr9 70892966 70893093 -53183079 - L1M4 LINE L1 -1002 5144 4990 8 1125 276 30 0 0 chr9 70893150 70893183 -53182989 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1125 426 39 0 0 chr9 70893190 70893242 -53182930 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1125 807 209 13 0 chr9 70893244 70893397 -53182775 - B3A SINE B2 -43 155 1 8 1125 36007 69 11 3 chr9 70894412 70900345 -53175827 - L1Md_F2 LINE L1 -11 6574 412 8 1125 481 356 25 29 chr9 70900535 70900778 -53175394 - MLT1D LTR MaLR -1 504 263 8 1125 2419 187 34 30 chr9 70900787 70900882 -53175290 - RLTR20B2 LTR ERVK 0 560 465 8 1125 456 19 0 0 chr9 70900882 70900935 -53175237 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1125 408 40 0 0 chr9 70900935 70900984 -53175188 + (GA)n Simple_repeat Simple_repeat 2 51 0 8 1125 2419 187 34 30 chr9 70900984 70901445 -53174727 - RLTR20B2 LTR ERVK -96 464 2 8 1125 376 181 28 0 chr9 70901579 70901651 -53174521 + B3A SINE B2 1 74 -124 8 1125 481 232 7 110 chr9 70901895 70902050 -53174122 + B3A SINE B2 1 139 -59 8 1125 405 0 0 0 chr9 70902050 70902095 -53174077 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 1125 465 19 0 0 chr9 70902095 70902148 -53174024 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1125 584 133 0 66 chr9 70902630 70902751 -53173421 - B3A SINE B2 -81 117 5 8 1125 219 36 0 0 chr9 70903025 70903053 -53173119 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 8 1125 188 342 42 17 chr9 70903068 70903187 -53172985 - MIR SINE MIR -38 224 103 8 1125 1195 258 21 58 chr9 70903853 70904179 -53171993 + MTE2b LTR MaLR 12 323 -56 8 1125 654 49 0 0 chr9 70904179 70904261 -53171911 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 8 1125 1195 258 21 58 chr9 70904261 70904312 -53171860 + MTE2b LTR MaLR 324 375 -4 8 1125 210 295 120 87 chr9 70905443 70905488 -53170684 - B3 SINE B2 -1 215 1 8 1125 693 278 6 6 chr9 70905488 70905651 -53170521 - RSINE1 SINE B4 -1 164 2 8 1125 2195 91 3 19 chr9 70905749 70906073 -53170099 + ORR1A2 LTR MaLR 1 319 -8 8 1125 243 245 0 0 chr9 70906068 70906121 -53170051 - B1F2 SINE Alu -73 76 24 8 1125 642 241 122 12 chr9 70906201 70906373 -53169799 + B3A SINE B2 2 192 -6 8 1125 534 16 0 0 chr9 70906873 70906936 -53169236 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 1125 358 68 7 122 chr9 70907187 70907259 -53168913 - B2_Mm2 SINE B2 -83 115 46 9 1125 998 112 81 0 chr9 70907290 70907450 -53168722 - B2_Mm2 SINE B2 -22 173 1 9 1125 632 270 74 67 chr9 70907559 70907829 -53168343 - B4 SINE B4 -20 272 1 9 1125 1119 279 81 32 chr9 70908136 70908569 -53167603 + L1MA4 LINE L1 5458 5911 -389 9 1125 736 282 65 7 chr9 70908671 70908998 -53167174 - MTD LTR MaLR -14 405 45 9 1126 453 78 0 53 chr9 70911131 70911226 -53164946 + (CCAA)n Simple_repeat Simple_repeat 2 91 0 9 1126 228 287 114 63 chr9 70911399 70911574 -53164598 - LTR78 LTR ERV1 -479 825 642 9 1126 401 241 170 28 chr9 70912638 70912705 -53163467 + RMER30 DNA MER1_type 15 81 -121 9 1126 369 0 0 0 chr9 70912705 70912746 -53163426 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1126 401 241 170 28 chr9 70912746 70912819 -53163353 + RMER30 DNA MER1_type 82 175 -27 9 1126 722 262 43 10 chr9 70912920 70913128 -53163044 + ID_B1 SINE B4 5 219 -5 9 1126 300 137 0 0 chr9 70913135 70913186 -53162986 + (A)n Simple_repeat Simple_repeat 1 51 0 9 1126 369 268 48 16 chr9 70913609 70913734 -53162438 - MTEb LTR MaLR -7 372 244 9 1126 1656 235 131 39 chr9 70913974 70914540 -53161632 + RMER20B LTR ERVK 10 627 0 9 1126 301 263 58 25 chr9 70915250 70915371 -53160801 - Charlie19a DNA Charlie -2 384 260 9 1126 192 300 74 60 chr9 70915654 70915803 -53160369 - MIRb SINE MIR -6 262 112 9 1126 709 187 14 61 chr9 70915806 70915954 -53160218 + B1_Mur1 SINE Alu 2 142 -7 9 1126 183 234 0 0 chr9 70915955 70916032 -53160140 + GA-rich Low_complexity Low_complexity 2 78 0 9 1126 613 247 14 0 chr9 70917113 70917259 -53158913 - RSINE1 SINE B4 -14 151 4 9 1126 297 292 47 55 chr9 70917689 70917816 -53158356 - HAL1 LINE L1 -878 1629 1504 9 1126 348 283 87 27 chr9 70917829 70918025 -53158147 + L1MA4A LINE L1 5745 5924 -379 9 1126 417 174 0 52 chr9 70918197 70918294 -53157878 + RSINE1 SINE B4 19 110 -55 9 1126 333 0 0 0 chr9 70918294 70918331 -53157841 + (TC)n Simple_repeat Simple_repeat 1 37 0 9 1126 297 0 0 0 chr9 70918331 70918363 -53157809 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1126 28 61 0 0 chr9 70920924 70920973 -53155199 + AT_rich Low_complexity Low_complexity 1 49 0 9 1126 332 220 59 35 chr9 70920973 70921058 -53155114 - ID_B1 SINE B4 -1 223 137 9 1126 1087 192 91 30 chr9 70921556 70921819 -53154353 + Lx5 LINE L1 6772 7050 0 9 1126 477 0 0 0 chr9 70921938 70921991 -53154181 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1126 882 232 0 62 chr9 70922446 70922657 -53153515 - B3A SINE B2 0 198 1 9 1126 493 239 0 9 chr9 70922664 70922778 -53153394 - PB1D9 SINE Alu -7 113 1 9 1126 198 0 0 0 chr9 70922932 70922954 -53153218 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1126 465 34 0 0 chr9 70923626 70923685 -53152487 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1126 210 37 0 0 chr9 70923688 70923715 -53152457 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 9 1126 300 215 11 37 chr9 70924617 70924811 -53151361 + CT-rich Low_complexity Low_complexity 1 188 0 9 1126 312 158 0 0 chr9 70924842 70924899 -53151273 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 9 1126 242 297 13 13 chr9 70925412 70925487 -53150685 - MIRb SINE MIR -85 183 109 9 1126 1122 208 0 5 chr9 70925761 70925978 -53150194 - B3 SINE B2 0 216 1 9 1126 972 208 127 31 chr9 70926035 70926163 -53150009 - Lx9 LINE L1 -2 7642 7504 9 1126 906 131 0 0 chr9 70926163 70926308 -53149864 + (TA)n Simple_repeat Simple_repeat 2 146 0 9 1126 972 208 127 31 chr9 70926308 70926501 -53149671 - Lx9 LINE L1 -141 7503 7291 9 1126 899 195 5 26 chr9 70927711 70927901 -53148271 + B4 SINE B4 2 187 -105 9 1126 272 238 5 77 chr9 70927901 70928001 -53148171 + B4 SINE B4 80 272 -20 9 1126 260 261 0 11 chr9 70928037 70928130 -53148042 + (CA)n Simple_repeat Simple_repeat 1 92 0 9 1126 11206 21 1 0 chr9 70928241 70930200 -53145972 - L1Md_T LINE L1 0 6582 4623 9 1126 2435 131 48 51 chr9 70930201 70930675 -53145497 + IAPLTR2_Mm LTR ERVK 1 473 -2 9 1126 4513 60 65 43 chr9 70930675 70931321 -53144851 + IAPEz-int LTR ERVK 3 662 -5819 9 1126 454 66 0 32 chr9 70931321 70931384 -53144788 + IAPEz-int LTR ERVK 1359 1419 -5062 9 1126 1849 119 4 4 chr9 70931373 70931635 -53144537 + IAPEz-int LTR ERVK 2236 2497 -5183 9 1126 953 80 24 0 chr9 70931630 70931755 -53144417 + IAPEz-int LTR ERVK 4783 4910 -2770 9 1126 21410 15 3 0 chr9 70931757 70934109 -53142063 + IAPEz-int LTR ERVK 4123 6481 0 9 1126 2356 143 42 52 chr9 70934109 70934589 -53141583 + IAPLTR2_Mm LTR ERVK 1 475 0 9 1126 27887 49 0 4 chr9 70934589 70939077 -53137095 - L1Md_Gf LINE L1 -1256 4630 66 9 1126 474 157 0 0 chr9 70939575 70939658 -53136514 + (TG)n Simple_repeat Simple_repeat 1 83 0 9 1126 849 299 52 28 chr9 70939668 70939919 -53136253 - B4 SINE B4 0 292 36 9 1126 682 193 13 52 chr9 70940147 70940300 -53135872 - Lx9 LINE L1 -229 7415 7269 9 1126 504 43 0 14 chr9 70940300 70940371 -53135801 + B1_Mus2 SINE Alu 78 147 0 9 1126 186 43 0 0 chr9 70940371 70940394 -53135778 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1126 227 245 0 54 chr9 70940479 70940535 -53135637 + MLT1H1 LTR MaLR 321 373 -182 9 1126 206 213 26 39 chr9 70940989 70941067 -53135105 - L3 LINE CR1 -868 3621 3545 9 1126 331 251 201 15 chr9 70941162 70941292 -53134880 - B3A SINE B2 -42 156 1 9 1126 187 306 40 10 chr9 70941433 70941532 -53134640 - L3 LINE CR1 -867 3622 3521 9 1126 356 310 71 0 chr9 70941850 70942005 -53134167 + MIRb SINE MIR 27 192 -76 9 1126 32895 71 12 26 chr9 70942018 70947231 -53128941 + L1Md_F LINE L1 441 5586 -297 9 1126 8050 60 0 2 chr9 70947231 70948229 -53127943 + L1Md_F2 LINE L1 5587 6582 0 9 1126 1128 259 128 11 chr9 70948336 70948711 -53127461 + MTD LTR MaLR 1 419 0 9 1126 667 193 70 132 chr9 70948905 70949132 -53127040 + B3 SINE B2 1 213 -3 9 1126 423 352 27 50 chr9 70949447 70949668 -53126504 + B4A SINE B4 2 217 -75 9 1126 303 302 0 11 chr9 70949707 70949794 -53126378 + (CATA)n Simple_repeat Simple_repeat 2 87 0 9 1126 455 167 11 0 chr9 70949801 70949891 -53126281 + GA-rich Low_complexity Low_complexity 2 92 0 9 1126 192 292 45 0 chr9 70950009 70950098 -53126074 - L3 LINE CR1 -867 3622 3530 9 1126 337 337 0 10 chr9 70950164 70950263 -53125909 + B3 SINE B2 81 178 -38 9 1126 391 115 42 0 chr9 70950263 70950359 -53125813 + (CAGA)n Simple_repeat Simple_repeat 1 100 0 9 1126 333 0 0 0 chr9 70950418 70950455 -53125717 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1126 219 154 26 0 chr9 70950559 70950598 -53125574 + CT-rich Low_complexity Low_complexity 2 41 0 9 1126 267 103 0 0 chr9 70950849 70950888 -53125284 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 1126 579 29 0 0 chr9 70950914 70950983 -53125189 + (CA)n Simple_repeat Simple_repeat 1 69 0 9 1126 728 251 94 87 chr9 70951029 70951304 -53124868 + MTE2a LTR MaLR 63 339 -40 9 1126 217 298 0 0 chr9 70951332 70951389 -53124783 + (CATA)n Simple_repeat Simple_repeat 4 60 0 9 1126 1507 48 11 5 chr9 70951692 70951879 -53124293 + B2_Mm2 SINE B2 1 188 -7 9 1126 715 243 75 55 chr9 70951987 70952134 -53124038 - L1MB5 LINE L1 -168 6006 5862 9 1126 807 236 38 0 chr9 70952134 70952291 -53123881 + RSINE1 SINE B4 3 165 0 9 1126 715 248 67 62 chr9 70952291 70952479 -53123693 - L1MB5 LINE L1 -323 5861 5685 9 1126 308 236 146 35 chr9 70952566 70952737 -53123435 - L1M4 LINE L1 -3399 2747 2558 9 1126 479 290 75 7 chr9 70952743 70952889 -53123283 + Lx8 LINE L1 7233 7388 -85 9 1126 761 194 0 6 chr9 70952906 70953087 -53123085 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1126 486 257 175 28 chr9 70953121 70953441 -53122731 - L1M4 LINE L1 -3581 2565 2199 9 1126 346 266 18 27 chr9 70953461 70953573 -53122599 - PB1D10 SINE Alu -5 112 2 9 1126 736 306 90 46 chr9 70953646 70954226 -53121946 - L1ME2 LINE L1 -55 6109 5501 9 1126 602 269 81 6 chr9 70954463 70954635 -53121537 - B3 SINE B2 -25 191 7 9 1126 336 242 54 11 chr9 70954957 70955049 -53121123 - PB1D7 SINE Alu -8 112 17 9 1126 496 245 164 25 chr9 70956098 70956257 -53119915 + B3A SINE B2 1 181 -17 9 1126 367 108 48 29 chr9 70956262 70956367 -53119805 + (CA)n Simple_repeat Simple_repeat 1 107 0 9 1126 878 279 108 10 chr9 70956373 70956704 -53119468 + MTEa LTR MaLR 1 379 0 9 1126 229 329 216 7 chr9 70957049 70957202 -53118970 + RMER20B LTR ERVK 235 419 -208 9 1126 189 0 0 0 chr9 70957285 70957306 -53118866 + (CTG)n Simple_repeat Simple_repeat 3 23 0 9 1126 1165 87 0 0 chr9 70960292 70960453 -53115719 - B2_Mm2 SINE B2 -33 162 2 9 1126 576 286 6 24 chr9 70960607 70960772 -53115400 + RSINE1 SINE B4 3 164 -1 9 1126 198 0 0 0 chr9 70961879 70961901 -53114271 + (CCA)n Simple_repeat Simple_repeat 3 24 0 9 1126 4401 20 2 0 chr9 70962238 70962730 -53113442 - MT2_Mm LTR ERVL 0 493 1 9 1126 321 0 0 0 chr9 70962730 70962768 -53113404 - MERVL-int LTR ERVL 0 5485 5448 9 1126 344 179 46 35 chr9 70962768 70962855 -53113317 - ORR1A3-int LTR MaLR -1323 640 553 9 1126 48474 14 6 0 chr9 70962855 70968181 -53107991 - MERVL-int LTR ERVL -125 5360 1 9 1126 4401 20 2 0 chr9 70968181 70968673 -53107499 - MT2_Mm LTR ERVL 0 493 1 9 1126 246 303 0 0 chr9 70968734 70968800 -53107372 + ID4 SINE ID 17 82 -1 9 1126 322 247 12 0 chr9 70968924 70969005 -53107167 - B1F SINE Alu 0 149 68 9 1126 630 82 0 0 chr9 70969702 70969800 -53106372 + (TG)n Simple_repeat Simple_repeat 2 99 0 9 1126 246 317 98 0 chr9 70969907 70969989 -53106183 - B4A SINE B4 -113 179 90 9 1126 1296 36 133 0 chr9 70970294 70970459 -53105713 + B2_Mm1t SINE B2 1 187 -6 9 1126 924 208 30 0 chr9 70970913 70971115 -53105057 + B3 SINE B2 9 216 0 9 1126 1225 48 0 0 chr9 70971119 70971265 -53104907 + B1_Mm SINE Alu 2 147 0 9 1126 189 0 0 0 chr9 70971265 70971286 -53104886 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1126 25 0 0 0 chr9 70971668 70971693 -53104479 + AT_rich Low_complexity Low_complexity 1 25 0 1 1126 614 277 13 6 chr9 70971816 70971972 -53104200 + RSINE1 SINE B4 1 157 -8 1 1126 189 260 0 0 chr9 70972268 70972318 -53103854 - MIR SINE MIR -124 138 89 1 1126 847 160 28 0 chr9 70972408 70972552 -53103620 - B1_Mur4 SINE Alu -1 149 2 1 1126 190 323 0 31 chr9 70973298 70973394 -53102778 - MIRc SINE MIR -108 160 68 1 1126 232 184 0 20 chr9 70974257 70974307 -53101865 - L3 LINE CR1 -16 4473 4425 1 1126 498 33 0 0 chr9 70975340 70975400 -53100772 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1126 5146 54 36 2 chr9 70975401 70976045 -53100127 - L1_Mus3 LINE L1 -10 6628 5963 1 1126 775 192 173 16 chr9 70976787 70976972 -53099200 - B3 SINE B2 -2 214 1 1 1126 1197 82 58 6 chr9 70977213 70977385 -53098787 + B2_Mm1t SINE B2 1 181 -12 1 1126 244 167 0 0 chr9 70977422 70977464 -53098708 + B2_Mm2 SINE B2 64 105 -90 1 1126 204 40 0 0 chr9 70977482 70977507 -53098665 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1126 264 59 0 0 chr9 70977509 70977543 -53098629 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1126 360 148 0 0 chr9 70977549 70977610 -53098562 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1126 570 211 0 52 chr9 70977632 70977767 -53098405 - B1F2 SINE Alu -16 133 6 1 1126 241 270 0 0 chr9 70977862 70977925 -53098247 + C-rich Low_complexity Low_complexity 1 63 0 1 1126 723 263 90 78 chr9 70978402 70978724 -53097448 + MTD LTR MaLR 1 326 -93 1 1126 187 182 0 0 chr9 70979435 70979468 -53096704 - MIR SINE MIR -61 147 115 1 1126 457 285 0 30 chr9 70979501 70979635 -53096537 - ID_B1 SINE B4 -1 223 94 1 1126 751 262 11 32 chr9 70980028 70980217 -53095955 + B3 SINE B2 5 189 -27 1 1126 392 280 175 0 chr9 70981432 70981575 -53094597 + B3A SINE B2 1 168 -30 1 1126 413 233 60 37 chr9 70983398 70983532 -53092640 + RSINE1 SINE B4 25 161 -4 1 1126 1279 191 4 0 chr9 70984350 70984575 -53091597 + URR1A DNA MER1_type 1 226 0 1 1126 216 0 0 0 chr9 70985057 70985081 -53091091 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1126 435 325 12 30 chr9 70987411 70987576 -53088596 - MLT1G3 LTR MaLR -196 399 238 1 1126 3483 36 43 9 chr9 70988830 70989252 -53086920 + RLTR10C LTR ERVK 1 436 0 1 1126 8427 126 2 0 chr9 70989361 70990675 -53085497 + L1_Mm LINE L1 2736 4052 -1831 1 1126 8180 62 12 3 chr9 70990675 70991703 -53084469 + L1_Mus3 LINE L1 5602 6638 0 1 1126 1224 147 22 52 chr9 70991710 70991940 -53084232 + URR1B DNA MER1_type 1 223 -2 1 1126 412 281 122 93 chr9 70991959 70992163 -53084009 + ID_B1 SINE B4 5 214 -10 1 1126 589 284 62 76 chr9 70992624 70992899 -53083273 + B4 SINE B4 2 272 -20 1 1126 243 179 70 18 chr9 70992996 70993053 -53083119 - ORR1D2 LTR MaLR 0 370 311 1 1126 577 274 50 75 chr9 70993364 70993565 -53082607 + B3A SINE B2 3 198 0 1 1126 369 221 22 34 chr9 70994792 70994881 -53081291 + RSINE1 SINE B4 2 89 -76 1 1126 2317 62 84 14 chr9 70994878 70995237 -53080935 + MTB_Mm LTR MaLR 24 407 0 1 1126 237 97 0 0 chr9 70995497 70995528 -53080644 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1 1126 784 0 126 19 chr9 70995528 70995687 -53080485 + (GGAGAA)n Simple_repeat Simple_repeat 3 178 0 1 1126 3341 89 9 2 chr9 70995867 70996329 -53079843 - L1_Mus3 LINE L1 0 6638 6174 1 1126 3546 58 2 0 chr9 70996329 70996764 -53079408 + L1_Mus3 LINE L1 5747 6182 -456 1 1126 210 171 0 0 chr9 70997055 70997096 -53079076 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1126 506 227 73 192 chr9 70997106 70997239 -53078933 - ID_B1 SINE B4 -7 217 94 1 1126 300 53 0 0 chr9 70997239 70997277 -53078895 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1 1126 506 227 73 192 chr9 70997277 70997388 -53078784 - ID_B1 SINE B4 -131 93 2 1 1126 1236 113 11 0 chr9 70997719 70997896 -53078276 + B2_Mm1t SINE B2 1 179 -14 1 1126 425 86 333 28 chr9 70997956 70998064 -53078108 + B2_Mm2 SINE B2 47 187 -8 1 1126 314 146 119 24 chr9 70998207 70998291 -53077881 + PB1D9 SINE Alu 28 119 -1 1 1126 322 235 19 10 chr9 70999666 70999769 -53076403 - ID_B1 SINE B4 0 224 121 1 1126 356 247 0 34 chr9 70999911 70999999 -53076173 + RSINE1 SINE B4 3 87 -78 1 1126 1242 41 0 0 chr9 71000093 71000239 -53075933 + B1_Mus2 SINE Alu 2 147 0 1 1126 1072 186 15 10 chr9 71000375 71000570 -53075602 + B3 SINE B2 1 196 -20 2 1126 270 0 0 0 chr9 71000570 71000600 -53075572 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 3 1126 278 26 26 0 chr9 71000841 71000880 -53075292 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1126 1248 41 0 0 chr9 71001341 71001488 -53074684 + B1_Mus2 SINE Alu 1 147 0 5 1126 218 0 0 86 chr9 71001488 71001523 -53074649 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1126 336 259 60 67 chr9 71003103 71003252 -53072920 + B1F1 SINE Alu 2 149 0 7 1126 1168 34 7 52 chr9 71003700 71003855 -53072317 + B1_Mus1 SINE Alu 1 148 0 8 1126 686 220 8 0 chr9 71003973 71004105 -53072067 + B1_Mur1 SINE Alu 3 135 -14 9 1126 777 334 75 23 chr9 71007514 71007912 -53068260 - MER21B LTR ERV1 -33 830 412 1 1126 180 0 0 0 chr9 71008518 71008538 -53067634 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1126 1185 55 0 7 chr9 71008538 71008685 -53067487 - B1_Mm SINE Alu 0 147 2 1 1126 689 237 0 0 chr9 71008891 71009022 -53067150 + B1_Mur1 SINE Alu 2 132 -17 1 1126 1216 116 22 0 chr9 71009324 71009505 -53066667 + B2_Mm2 SINE B2 2 186 -9 1 1126 1209 42 0 0 chr9 71009592 71009736 -53066436 + B1_Mm SINE Alu 1 144 -3 1 1126 473 16 0 32 chr9 71009736 71009799 -53066373 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 1 1126 288 0 0 0 chr9 71010039 71010071 -53066101 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1126 486 275 51 57 chr9 71010103 71010261 -53065911 + RSINE1 SINE B4 3 159 -6 1 1126 258 105 0 0 chr9 71010261 71010299 -53065873 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1126 303 122 0 0 chr9 71010342 71010391 -53065781 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 2 1126 662 155 25 118 chr9 71011643 71011700 -53064472 + B1_Mur4 SINE Alu 5 46 -104 2 1126 315 0 0 0 chr9 71011700 71011735 -53064437 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1126 662 155 25 118 chr9 71011735 71011838 -53064334 + B1_Mur4 SINE Alu 47 150 0 2 1126 236 149 0 21 chr9 71011838 71011886 -53064286 + G-rich Low_complexity Low_complexity 2 48 0 2 1126 333 47 0 0 chr9 71012258 71012301 -53063871 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 2 1126 30 0 0 0 chr9 71012501 71012531 -53063641 + AT_rich Low_complexity Low_complexity 1 30 0 2 1126 225 280 0 0 chr9 71012762 71012812 -53063360 - L2a LINE L2 -2 3424 3375 2 1126 697 167 49 28 chr9 71013460 71013602 -53062570 + B1_Mus2 SINE Alu 1 145 -2 2 1126 191 146 0 24 chr9 71014455 71014497 -53061675 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 2 1126 278 219 12 24 chr9 71014540 71014624 -53061548 + (TCCA)n Simple_repeat Simple_repeat 1 83 0 2 1126 189 0 0 0 chr9 71015005 71015026 -53061146 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1126 1031 84 0 14 chr9 71017317 71017461 -53058711 + B1_Mus1 SINE Alu 5 146 -2 3 1126 294 229 0 0 chr9 71017835 71017905 -53058267 + CT-rich Low_complexity Low_complexity 4 73 0 3 1126 459 0 0 0 chr9 71017999 71018050 -53058122 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1126 1414 139 0 0 chr9 71018079 71018302 -53057870 + ORR1A2 LTR MaLR 1 223 -104 3 1126 1305 183 56 82 chr9 71018268 71018841 -53057331 - ORR1A1-int LTR MaLR -1027 936 321 3 1126 23 0 0 0 chr9 71019446 71019469 -53056703 + AT_rich Low_complexity Low_complexity 1 23 0 3 1126 503 302 154 54 chr9 71019620 71020082 -53056090 - MLT1E1 LTR MaLR -140 514 7 3 1126 1054 332 23 32 chr9 71020314 71020749 -53055423 + MLT2F LTR ERVL 187 617 -46 3 1126 233 337 0 0 chr9 71020751 71020843 -53055329 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 1126 515 242 19 98 chr9 71021467 71021682 -53054490 - B3A SINE B2 0 198 1 3 1126 259 219 0 68 chr9 71022087 71022175 -53053997 + MLT1A1 LTR MaLR 318 399 -9 4 1126 441 254 43 14 chr9 71022442 71022582 -53053590 - B3A SINE B2 0 198 55 4 1126 433 280 42 0 chr9 71023306 71023424 -53052748 - RSINE1 SINE B4 0 165 43 4 1126 353 330 0 10 chr9 71024107 71024208 -53051964 - PB1D10 SINE Alu -17 100 1 4 1126 1226 96 73 0 chr9 71024954 71025131 -53051041 - B2_Mm2 SINE B2 -4 191 2 4 1126 1073 57 50 0 chr9 71025143 71025283 -53050889 + B1_Mus2 SINE Alu 1 147 0 4 1126 267 103 0 0 chr9 71025283 71025322 -53050850 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1126 1466 252 114 10 chr9 71025420 71025902 -53050270 + Lx8 LINE L1 6927 7458 -15 4 1126 534 243 27 0 chr9 71026034 71026175 -53049997 + B1F SINE Alu 2 147 -2 4 1126 242 230 19 29 chr9 71026188 71026291 -53049881 + GA-rich Low_complexity Low_complexity 4 105 0 4 1126 1267 184 4 13 chr9 71026707 71026933 -53049239 - URR1A DNA MER1_type -2 224 1 5 1126 237 379 36 24 chr9 71027212 71027377 -53048795 + MIR SINE MIR 29 195 -67 5 1126 596 279 59 43 chr9 71028421 71028608 -53047564 - B4 SINE B4 -100 192 3 5 1126 1428 86 0 5 chr9 71028676 71028863 -53047309 + B2_Mm2 SINE B2 2 187 -8 5 1126 3119 134 15 70 chr9 71029201 71029803 -53046369 - RMER4B LTR ERVK 0 585 17 5 1126 683 88 87 9 chr9 71029804 71029919 -53046253 + Lx2 LINE L1 6874 6997 0 5 1126 897 109 16 0 chr9 71029958 71030086 -53046086 - MurERV4-int LTR ERVK -1 5259 5130 5 1126 9848 165 60 7 chr9 71030068 71031862 -53044310 - MurERV4-int LTR ERVK -3132 2128 119 5 1126 1413 78 0 6 chr9 71031967 71032148 -53044024 - B2_Mm2 SINE B2 -14 181 2 5 1126 355 159 159 0 chr9 71032149 71032218 -53043954 - MurERV4-int LTR ERVK -5180 80 1 5 1126 3462 119 83 29 chr9 71032218 71032773 -53043399 - RMER4B LTR ERVK 0 585 1 5 1126 303 361 96 0 chr9 71032898 71033037 -53043135 - MLT1D LTR MaLR -275 230 75 5 1126 216 111 0 0 chr9 71033037 71033073 -53043099 + (TTA)n Simple_repeat Simple_repeat 3 38 0 5 1126 303 361 96 0 chr9 71033073 71033141 -53043031 - MLT1D LTR MaLR -431 74 4 5 1126 572 286 34 31 chr9 71033501 71033917 -53042255 + RLTR12B LTR ERVK 5 291 -68 5 1126 189 0 0 0 chr9 71034570 71034591 -53041581 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1126 778 238 114 0 chr9 71034968 71035161 -53041011 - B3 SINE B2 -1 215 1 6 1126 314 239 68 0 chr9 71035565 71035653 -53040519 + PB1D9 SINE Alu 5 98 -22 6 1126 378 0 34 34 chr9 71035778 71035837 -53040335 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 6 1126 24 67 0 0 chr9 71035877 71035922 -53040250 + AT_rich Low_complexity Low_complexity 1 45 0 6 1126 781 302 61 61 chr9 71036579 71036956 -53039216 - MLT1D LTR MaLR -127 378 2 6 1126 275 200 0 0 chr9 71037409 71037454 -53038718 + B3A SINE B2 1 45 -153 6 1126 228 35 0 0 chr9 71037454 71037483 -53038689 + (T)n Simple_repeat Simple_repeat 1 29 0 6 140 38612 32 1 1 chr9 71037486 71044777 -53031395 - L1Md_T LINE L1 0 6585 1 6 1127 572 280 11 27 chr9 71044777 71044964 -53031208 + B3 SINE B2 31 214 -2 6 1127 186 118 0 0 chr9 71045090 71045124 -53031048 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1127 21 36 0 0 chr9 71045472 71045500 -53030672 + AT_rich Low_complexity Low_complexity 1 28 0 7 1127 629 58 0 11 chr9 71045509 71045596 -53030576 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 7 1127 562 211 130 0 chr9 71045596 71045719 -53030453 - B1_Mur2 SINE Alu -10 139 1 7 1127 347 318 65 0 chr9 71045738 71045845 -53030327 - PB1D10 SINE Alu -2 115 2 7 1127 21 0 0 0 chr9 71045845 71045866 -53030306 + AT_rich Low_complexity Low_complexity 1 21 0 7 1127 466 297 38 42 chr9 71045996 71046235 -53029937 + RLTR42-int LTR ERVK 1159 1396 -4126 7 1127 222 174 0 0 chr9 71046396 71046442 -53029730 + T-rich Low_complexity Low_complexity 1 46 0 7 1127 194 0 0 37 chr9 71046608 71046635 -53029537 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 7 1127 694 256 190 84 chr9 71046803 71047417 -53028755 - L1M5 LINE L1 -2152 3994 3303 7 1127 750 168 52 117 chr9 71047417 71047647 -53028525 - B3 SINE B2 0 216 2 7 1127 694 256 190 84 chr9 71047647 71047773 -53028399 - L1M5 LINE L1 -2844 3302 3175 7 1127 21 36 0 0 chr9 71047829 71047857 -53028315 + AT_rich Low_complexity Low_complexity 1 28 0 8 1127 374 162 0 0 chr9 71047898 71047966 -53028206 - RMER1B Other Other -11 1055 988 8 1127 271 156 22 0 chr9 71047967 71048012 -53028160 - RMER1B Other Other -624 442 397 8 1127 363 275 168 0 chr9 71047983 71048114 -53028058 - RMER1A Other Other -705 325 173 8 1127 510 210 30 0 chr9 71048235 71048335 -53027837 - RSINE1 SINE B4 -22 143 41 8 1127 519 300 83 56 chr9 71048659 71049067 -53027105 - L1M5 LINE L1 -563 5677 5254 8 1127 594 0 0 0 chr9 71049121 71049187 -53026985 + (TC)n Simple_repeat Simple_repeat 1 66 0 8 1127 864 164 193 22 chr9 71049222 71049403 -53026769 + B3 SINE B2 1 212 -4 8 1127 242 269 39 0 chr9 71049906 71049984 -53026188 - L1MC4 LINE L1 -468 7574 7494 8 1127 524 320 77 57 chr9 71050380 71050603 -53025569 - L1MB8 LINE L1 -88 6090 5869 8 1127 1159 162 4 108 chr9 71050603 71050729 -53025443 - URR1A DNA MER1_type -3 223 116 8 1127 1223 48 0 0 chr9 71050729 71050876 -53025296 - B1_Mus1 SINE Alu 0 148 2 9 1127 1159 162 4 108 chr9 71050876 71050998 -53025174 - URR1A DNA MER1_type -111 115 1 8 1127 524 320 77 57 chr9 71050998 71051162 -53025010 - L1MB8 LINE L1 -310 5868 5695 8 1127 658 200 64 0 chr9 71051890 71052030 -53024142 - B1_Mur1 SINE Alu 0 149 1 9 1127 639 144 30 6 chr9 71052192 71052360 -53023812 + (TG)n Simple_repeat Simple_repeat 1 172 0 9 1127 996 194 12 83 chr9 71052615 71052868 -53023304 + Lx9 LINE L1 6961 7195 -449 9 1127 1058 194 144 0 chr9 71052869 71053153 -53023019 + Lx9 LINE L1 7320 7644 0 9 1127 1171 62 7 0 chr9 71053163 71053308 -53022864 + B1_Mus2 SINE Alu 1 146 -1 9 1127 188 100 0 24 chr9 71053309 71053350 -53022822 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 9 1127 1212 113 11 6 chr9 71053353 71053531 -53022641 + B2_Mm1t SINE B2 1 179 -14 9 1127 337 72 339 18 chr9 71053602 71053714 -53022458 + B2_Mm2 SINE B2 47 194 -1 9 1127 525 235 17 0 chr9 71053906 71054021 -53022151 - B4 SINE B4 -97 195 79 9 1127 687 170 37 0 chr9 71054077 71054212 -53021960 + ORR1B1 LTR MaLR 5 144 -250 9 1127 1241 64 0 6 chr9 71054227 71054385 -53021787 - L1_Mus1 LINE L1 -618 5949 5793 1 1127 5092 64 2 3 chr9 71054385 71055028 -53021144 + L1_Mus1 LINE L1 5926 6567 0 1 1127 975 152 22 6 chr9 71055030 71055209 -53020963 + ORR1B1 LTR MaLR 211 392 -2 9 1127 431 290 28 9 chr9 71055588 71055776 -53020396 + B3 SINE B2 1 192 -6 1 1127 21 0 0 0 chr9 71056200 71056221 -53019951 + AT_rich Low_complexity Low_complexity 1 21 0 1 1127 868 263 81 33 chr9 71056588 71056859 -53019313 - MTD LTR MaLR -129 290 7 1 1127 601 282 150 53 chr9 71057244 71057510 -53018662 + B4 SINE B4 1 292 0 1 1127 579 230 62 48 chr9 71058401 71058547 -53017625 + RSINE1 SINE B4 8 155 -10 1 1127 21 0 0 0 chr9 71059622 71059643 -53016529 + AT_rich Low_complexity Low_complexity 1 21 0 1 1127 1638 32 10 26 chr9 71060613 71060808 -53015364 + B2_Mm1a SINE B2 2 193 0 1 1127 608 164 26 7 chr9 71062022 71062175 -53013997 + CT-rich Low_complexity Low_complexity 2 157 0 1 1127 692 214 64 13 chr9 71062175 71062331 -53013841 - ID_B1 SINE B4 -55 169 6 1 1127 22 56 0 0 chr9 71063322 71063358 -53012814 + GC_rich Low_complexity Low_complexity 1 36 0 1 1127 24 0 0 0 chr9 71063442 71063466 -53012706 + GC_rich Low_complexity Low_complexity 1 24 0 1 1127 22 35 0 0 chr9 71063604 71063633 -53012539 + GC_rich Low_complexity Low_complexity 1 29 0 1 1127 22 0 0 0 chr9 71066121 71066143 -53010029 + AT_rich Low_complexity Low_complexity 1 22 0 1 1127 25 0 0 0 chr9 71066691 71066716 -53009456 + AT_rich Low_complexity Low_complexity 1 25 0 1 1127 672 270 65 19 chr9 71067825 71068020 -53008152 - B3A SINE B2 -12 204 1 1 1127 540 0 0 0 chr9 71068229 71068289 -53007883 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1127 884 287 78 37 chr9 71068291 71068562 -53007610 + B4A SINE B4 5 286 -6 1 1127 543 286 57 36 chr9 71069027 71069219 -53006953 + MER58A DNA MER1_type 14 209 -15 1 1127 266 348 0 11 chr9 71069380 71069473 -53006699 + MIRb SINE MIR 120 211 -57 1 1127 218 61 102 0 chr9 71069545 71069594 -53006578 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1127 870 231 84 15 chr9 71071421 71071623 -53004549 - B3 SINE B2 0 216 1 1 1127 232 204 0 0 chr9 71072069 71072118 -53004054 - Tigger5 DNA MER2_type -67 2339 2291 1 1127 364 331 75 25 chr9 71072172 71072333 -53003839 - Tigger5 DNA MER2_type -2237 169 1 1 1127 568 306 90 50 chr9 71072441 71073167 -53003005 - L1ME3B LINE L1 -268 5972 5217 1 1127 21 36 0 0 chr9 71073615 71073643 -53002529 + AT_rich Low_complexity Low_complexity 1 28 0 1 1127 300 70 0 0 chr9 71073779 71073822 -53002350 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1127 1056 233 44 0 chr9 71073958 71074164 -53002008 + B3 SINE B2 1 215 -1 1 1127 244 339 100 33 chr9 71074700 71074880 -53001292 - MIR SINE MIR -13 249 58 1 1127 281 169 0 17 chr9 71078343 71078403 -52997769 + CT-rich Low_complexity Low_complexity 2 60 0 1 1127 224 216 0 38 chr9 71078429 71078482 -52997690 + GA-rich Low_complexity Low_complexity 4 54 0 1 1127 369 0 0 0 chr9 71078690 71078731 -52997441 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1127 429 20 0 0 chr9 71078731 71078780 -52997392 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1127 270 0 0 0 chr9 71080232 71080262 -52995910 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 1 1127 1143 200 14 28 chr9 71080320 71080536 -52995636 - B3 SINE B2 -3 213 1 1 1127 201 94 0 0 chr9 71081905 71081937 -52994235 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1127 441 0 0 0 chr9 71081957 71082006 -52994166 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1 1127 477 0 0 0 chr9 71083475 71083528 -52992644 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1127 1041 258 33 33 chr9 71083537 71083813 -52992359 - B4A SINE B4 -16 276 1 1 1127 351 0 0 0 chr9 71083830 71083869 -52992303 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1127 1268 55 0 0 chr9 71083869 71084014 -52992158 - B1_Mus2 SINE Alu -1 146 2 1 1127 182 281 10 136 chr9 71086566 71086669 -52989503 - L2c LINE L2 -12 3375 3286 1 1127 1020 296 70 20 chr9 71086920 71087262 -52988910 + MLT1A0 LTR MaLR 5 363 -2 1 1127 246 250 19 0 chr9 71087644 71087696 -52988476 + MIRc SINE MIR 98 150 -118 1 1127 226 367 130 0 chr9 71087937 71088106 -52988066 + MIRb SINE MIR 34 224 -44 1 1127 1148 274 53 0 chr9 71088467 71088733 -52987439 + B4 SINE B4 1 280 -12 1 1127 1055 86 7 0 chr9 71088768 71088920 -52987252 + (CA)n Simple_repeat Simple_repeat 2 154 0 1 1127 213 317 130 37 chr9 71089025 71089133 -52987039 + L2b LINE L2 3244 3361 -14 1 1127 184 263 70 0 chr9 71090763 71090820 -52985352 + L2b LINE L2 3360 3420 -6 1 1127 462 108 0 0 chr9 71092897 71092971 -52983201 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 1127 240 285 208 0 chr9 71092971 71093115 -52983057 - L1MD LINE L1 -1778 4368 4195 1 1127 2584 257 175 26 chr9 71093363 71094374 -52981798 + L1MC LINE L1 2696 3918 -2228 1 1127 3808 91 34 39 chr9 71094374 71094932 -52981240 - Lx LINE L1 -9 6645 6091 1 1127 2584 276 179 30 chr9 71094932 71095730 -52980442 + L1MC LINE L1 3919 4773 -1373 1 1127 1270 61 0 0 chr9 71096861 71097009 -52979163 + B1_Mus1 SINE Alu 1 148 0 1 1127 288 296 86 0 chr9 71097690 71097842 -52978330 - L1MC4 LINE L1 -881 7161 6997 1 1127 393 306 77 94 chr9 71098048 71098497 -52977675 - Looper DNA PiggyBac -6 1552 1105 1 1127 222 37 0 0 chr9 71098497 71098524 -52977648 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1 1127 393 306 77 94 chr9 71098524 71098565 -52977607 - Looper DNA PiggyBac -454 1104 1070 1 1127 279 314 29 0 chr9 71098755 71098825 -52977347 - ID4 SINE ID 0 83 12 1 1127 917 311 80 13 chr9 71098945 71099395 -52976777 - Looper DNA PiggyBac -934 624 145 1 1127 450 0 0 0 chr9 71099395 71099445 -52976727 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1127 717 229 7 28 chr9 71099449 71099593 -52976579 + RSINE1 SINE B4 23 163 -2 1 1127 335 261 126 0 chr9 71099633 71099744 -52976428 - Looper DNA PiggyBac -1425 133 9 1 1127 181 232 103 75 chr9 71100199 71100306 -52975866 + L3 LINE CR1 4380 4489 0 1 1127 441 0 0 0 chr9 71100631 71100680 -52975492 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1127 744 193 59 113 chr9 71101403 71101607 -52974565 + B3A SINE B2 2 194 -4 1 1127 270 0 0 0 chr9 71102992 71103022 -52973150 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1127 266 345 48 40 chr9 71104828 71104952 -52971220 - MIR3 SINE MIR -26 182 58 1 1127 274 56 0 0 chr9 71105228 71105264 -52970908 - tRNA-Cys-TGY tRNA tRNA -39 36 1 1 1127 2383 79 0 0 chr9 71105338 71105629 -52970543 - L1_Mus2 LINE L1 0 6566 6276 1 1127 260 146 36 0 chr9 71105931 71105986 -52970186 + CT-rich Low_complexity Low_complexity 1 57 0 1 1127 282 315 112 31 chr9 71106311 71106534 -52969638 + MER113A DNA MER1_type 57 297 -17 1 1127 213 39 0 0 chr9 71108976 71109002 -52967170 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1127 736 223 5 2 chr9 71109033 71109233 -52966939 + (CA)n Simple_repeat Simple_repeat 1 200 0 1 1127 189 0 0 0 chr9 71109233 71109254 -52966918 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1127 736 173 0 11 chr9 71109254 71109406 -52966766 + (CA)n Simple_repeat Simple_repeat 2 152 0 1 1127 216 333 29 72 chr9 71111690 71111829 -52964343 + MER91A DNA Tip100 30 162 -34 1 1127 710 245 20 59 chr9 71112026 71112230 -52963942 + B4 SINE B4 97 292 0 1 1127 456 318 103 24 chr9 71112570 71112869 -52963303 - MER58B DNA MER1_type -4 337 1 1 1127 533 291 86 52 chr9 71113158 71113390 -52962782 - MER33 DNA MER1_type -71 253 14 1 1127 906 236 13 4 chr9 71113791 71114017 -52962155 + L1MB7 LINE L1 3708 3935 -2211 1 1127 831 290 131 33 chr9 71113987 71114468 -52961704 + L1MB7 LINE L1 5645 6172 -12 1 1127 423 0 0 0 chr9 71114813 71114860 -52961312 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1127 566 82 10 20 chr9 71114860 71114960 -52961212 - Lx4A LINE L1 -6 7052 6954 1 1127 1048 207 50 0 chr9 71115662 71115860 -52960312 - B3 SINE B2 -5 211 4 1 1127 1513 63 11 5 chr9 71116170 71116361 -52959811 - B2_Mm2 SINE B2 -3 192 1 1 1127 1641 27 0 0 chr9 71116391 71116577 -52959595 - B2_Mm1a SINE B2 -6 187 2 1 1127 285 311 0 102 chr9 71117121 71117239 -52958933 - PB1D9 SINE Alu -2 118 13 1 1127 878 145 7 35 chr9 71117304 71117447 -52958725 - B1_Mur2 SINE Alu -10 139 1 1 1127 240 382 31 39 chr9 71118131 71118259 -52957913 + MER5A DNA MER1_type 49 175 -14 1 1127 800 293 114 33 chr9 71118798 71119247 -52956925 - L1ME1 LINE L1 -15 6164 5680 1 1127 249 57 0 0 chr9 71119279 71119314 -52956858 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1127 278 87 0 21 chr9 71119520 71119567 -52956605 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1127 288 0 0 0 chr9 71119567 71119598 -52956574 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1127 932 296 82 13 chr9 71119603 71120180 -52955992 - L1ME1 LINE L1 -814 5365 4745 1 1127 2295 135 52 0 chr9 71120264 71120628 -52955544 + ORR1C2 LTR MaLR 2 384 0 1 1127 455 240 144 50 chr9 71122288 71122468 -52953704 + MIRc SINE MIR 23 219 -49 1 1127 275 254 141 0 chr9 71122588 71122659 -52953513 - ID4_ SINE ID 0 83 3 1 1127 300 216 0 0 chr9 71123033 71123084 -52953088 + HAL1-3A_ME LINE L1 1974 2024 -834 1 1127 186 276 37 62 chr9 71123282 71123363 -52952809 - L2a LINE L2 -270 3156 3078 1 1127 925 60 15 0 chr9 71124595 71124728 -52951444 + (TCTCCC)n Simple_repeat Simple_repeat 4 138 0 1 1127 557 242 89 0 chr9 71124732 71124856 -52951316 - B1_Mur1 SINE Alu -5 144 10 1 1127 239 323 64 42 chr9 71127035 71127226 -52948946 + MIRb SINE MIR 5 210 -58 1 1127 442 307 80 29 chr9 71128066 71128304 -52947868 - MIR SINE MIR -4 258 9 1 1127 242 151 0 19 chr9 71128884 71128938 -52947234 + T-rich Low_complexity Low_complexity 3 55 0 1 1127 406 232 103 18 chr9 71130232 71130397 -52945775 + B2_Mm2 SINE B2 9 186 -9 1 1127 278 113 48 0 chr9 71131507 71131569 -52944603 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1127 232 283 91 36 chr9 71133362 71133472 -52942700 - ORR1E LTR MaLR -222 137 22 2 1127 610 259 30 0 chr9 71133913 71134048 -52942124 - B1F SINE Alu -10 139 1 2 1127 1183 294 55 14 chr9 71134759 71135107 -52941065 - MLT1A0 LTR MaLR -3 362 1 2 1127 215 380 100 6 chr9 71135119 71135299 -52940873 - MIRb SINE MIR -21 247 51 2 1127 298 291 102 98 chr9 71136193 71136418 -52939754 + MIR SINE MIR 5 230 -38 2 1127 2313 242 114 32 chr9 71137203 71138073 -52938099 - RCHARR1 DNA MER1_type 0 974 3 2 1127 342 0 0 0 chr9 71138639 71138677 -52937495 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1127 394 266 26 115 chr9 71138677 71138859 -52937313 - MER5A DNA MER1_type -17 172 7 2 1127 190 175 25 0 chr9 71139310 71139350 -52936822 + MER5A DNA MER1_type 81 121 -68 2 1127 906 138 0 62 chr9 71142200 71142362 -52933810 + URR1B DNA MER1_type 1 152 -73 2 1127 189 74 0 0 chr9 71142362 71142389 -52933783 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1127 1085 81 7 0 chr9 71142389 71142525 -52933647 - B1_Mus1 SINE Alu -10 138 2 2 1127 893 134 31 199 chr9 71142525 71142622 -52933550 + URR1B DNA MER1_type 153 215 -10 2 1127 358 242 15 0 chr9 71142712 71142800 -52933372 + CT-rich Low_complexity Low_complexity 45 134 0 2 1127 1272 81 0 0 chr9 71142800 71142974 -52933198 + (TTCTCC)n Simple_repeat Simple_repeat 3 176 0 2 1127 358 242 15 0 chr9 71142974 71143017 -52933155 + polypyrimidine Low_complexity Low_complexity 2 44 0 2 1127 315 0 0 0 chr9 71143017 71143052 -52933120 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1127 201 121 0 0 chr9 71144087 71144120 -52932052 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1127 195 42 0 0 chr9 71144385 71144409 -52931763 + (CTCA)n Simple_repeat Simple_repeat 4 27 0 2 1127 225 304 63 95 chr9 71145670 71145709 -52930463 - B3A SINE B2 0 198 16 2 1127 559 248 27 33 chr9 71145709 71145859 -52930313 - RSINE1 SINE B4 0 165 17 2 1127 342 0 0 0 chr9 71146213 71146251 -52929921 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1127 259 259 69 0 chr9 71147144 71147202 -52928970 + B4 SINE B4 1 62 -230 2 1127 3257 198 55 1 chr9 71147504 71148157 -52928015 + Lx9 LINE L1 6771 7458 -186 2 1127 518 286 23 31 chr9 71148916 71149046 -52927126 - B4 SINE B4 -13 279 151 2 1127 546 103 13 0 chr9 71149060 71149138 -52927034 - B4 SINE B4 -207 85 7 2 1127 1469 63 5 10 chr9 71150046 71150238 -52925934 + B2_Mm1a SINE B2 2 192 -1 2 1127 946 164 12 12 chr9 71150315 71150482 -52925690 + URR1A DNA MER1_type 60 226 0 2 1127 478 245 45 112 chr9 71150560 71150658 -52925514 + B3 SINE B2 2 96 -120 2 1127 207 0 0 0 chr9 71150658 71150681 -52925491 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 2 1127 478 245 45 112 chr9 71150681 71150761 -52925411 + B3 SINE B2 97 168 -48 2 1127 201 39 0 0 chr9 71150765 71150791 -52925381 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1127 368 310 26 0 chr9 71151777 71151893 -52924279 + L1MB2 LINE L1 5664 5782 -401 2 1127 276 53 0 0 chr9 71151914 71151952 -52924220 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 1127 484 281 26 0 chr9 71152141 71152294 -52923878 + L1MB2 LINE L1 5784 5940 -231 2 1127 846 84 0 40 chr9 71152298 71152447 -52923725 + (GGGA)n Simple_repeat Simple_repeat 4 146 0 2 1127 473 217 17 11 chr9 71152496 71152620 -52923552 + L1MB2 LINE L1 6063 6175 -8 2 1127 267 31 0 0 chr9 71152647 71152679 -52923493 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1127 225 381 8 0 chr9 71153486 71153612 -52922560 + (TG)n Simple_repeat Simple_repeat 2 128 0 2 1127 637 301 93 30 chr9 71153625 71153861 -52922311 - B4A SINE B4 0 292 42 2 1127 1351 68 5 73 chr9 71154048 71154254 -52921918 + B2_Mm1a SINE B2 2 193 0 2 1127 26 64 0 0 chr9 71154323 71154370 -52921802 + AT_rich Low_complexity Low_complexity 1 47 0 2 1127 187 178 44 0 chr9 71155369 71155414 -52920758 + MIR SINE MIR 33 79 -129 2 1127 270 0 0 0 chr9 71157164 71157194 -52918978 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1127 602 276 93 22 chr9 71157204 71157474 -52918698 + B4A SINE B4 2 290 -2 2 1127 342 287 35 7 chr9 71157482 71157626 -52918546 + (CA)n Simple_repeat Simple_repeat 1 148 0 2 1127 326 310 62 14 chr9 71157768 71157912 -52918260 + L1M5 LINE L1 5209 5359 -787 2 1127 2452 156 44 5 chr9 71158434 71158839 -52917333 + MTC LTR MaLR 1 421 0 2 1127 739 200 143 0 chr9 71159535 71159710 -52916462 + B3 SINE B2 1 200 -16 2 1127 201 39 0 0 chr9 71159710 71159736 -52916436 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1127 812 221 0 13 chr9 71159784 71159940 -52916232 + B3A SINE B2 1 154 -44 2 1127 200 211 11 43 chr9 71161513 71161607 -52914565 + C-rich Low_complexity Low_complexity 3 93 0 2 1127 927 253 5 27 chr9 71161711 71161934 -52914238 + ID_B1 SINE B4 3 220 -4 2 1127 471 186 58 11 chr9 71162675 71162762 -52913410 + 5S rRNA rRNA 2 92 -29 2 1127 260 269 6 0 chr9 71163711 71163776 -52912396 - B1_Mur4 SINE Alu -81 69 1 2 1127 255 291 63 0 chr9 71163715 71163794 -52912378 - B4A SINE B4 -143 149 66 2 1127 230 376 84 14 chr9 71165886 71166029 -52910143 + MIR SINE MIR 5 157 -105 2 1127 285 240 147 103 chr9 71166103 71166219 -52909953 + B4 SINE B4 3 123 -169 2 1127 1220 54 0 7 chr9 71166935 71167084 -52909088 + B1_Mus1 SINE Alu 1 148 0 2 1127 24 53 0 0 chr9 71167108 71167146 -52909026 + AT_rich Low_complexity Low_complexity 1 38 0 2 1127 1215 214 60 11 chr9 71167165 71167434 -52908738 + B4 SINE B4 1 282 -10 2 1127 271 307 75 38 chr9 71167829 71167988 -52908184 - L2c LINE L2 0 3387 3223 2 1127 603 0 0 0 chr9 71169238 71169305 -52906867 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 1127 405 0 0 0 chr9 71169673 71169718 -52906454 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1127 204 271 0 17 chr9 71170353 71170413 -52905759 - MIR3 SINE MIR -48 160 102 2 1127 293 118 20 0 chr9 71170497 71170548 -52905624 + (GGA)n Simple_repeat Simple_repeat 2 53 0 2 1127 554 93 0 11 chr9 71170883 71170970 -52905202 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 2 1127 1479 30 0 0 chr9 71171596 71171935 -52904237 + (CTGTG)n Simple_repeat Simple_repeat 1 339 0 2 1128 436 235 0 12 chr9 71172162 71172248 -52903924 + B4 SINE B4 1 85 -207 2 1128 369 0 0 0 chr9 71172259 71172300 -52903872 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1128 286 328 79 21 chr9 71173516 71173656 -52902516 + MLT1A1 LTR MaLR 6 153 -255 2 1128 568 185 80 58 chr9 71173751 71173889 -52902283 - B4 SINE B4 -4 288 148 2 1128 214 273 50 91 chr9 71173828 71173949 -52902223 - B1F SINE Alu -7 142 27 2 1128 267 270 16 0 chr9 71174737 71174800 -52901372 - MLT1I LTR MaLR -2 409 346 2 1128 321 320 0 0 chr9 71174906 71175084 -52901088 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1128 397 316 118 4 chr9 71175084 71175322 -52900850 - L1ME1 LINE L1 -20 6159 5895 2 1128 351 308 162 22 chr9 71175438 71175811 -52900361 - L1ME1 LINE L1 -476 5697 5283 2 1128 392 255 178 9 chr9 71175830 71175937 -52900235 - RSINE1 SINE B4 -38 127 3 2 1128 1225 303 145 60 chr9 71175971 71176489 -52899683 - L1M5 LINE L1 -898 5248 4724 2 1128 1319 14 0 0 chr9 71176489 71176636 -52899536 - B1_Mm SINE Alu 0 147 1 2 1128 1466 297 125 48 chr9 71176636 71178510 -52897662 - L1M5 LINE L1 -1423 4723 2657 2 1128 321 164 18 0 chr9 71178815 71178870 -52897302 + GA-rich Low_complexity Low_complexity 2 57 0 2 1128 504 0 0 134 chr9 71178871 71179214 -52896958 + (GGGAGA)n Simple_repeat Simple_repeat 1 297 0 2 1128 705 56 0 0 chr9 71179219 71179309 -52896863 + (GAA)n Simple_repeat Simple_repeat 1 90 0 2 1128 189 0 0 0 chr9 71180058 71180079 -52896093 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2 1128 1071 79 0 18 chr9 71180489 71180656 -52895516 + (TCTCCC)n Simple_repeat Simple_repeat 6 169 0 2 1128 513 0 0 0 chr9 71180656 71180713 -52895459 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1128 554 103 0 11 chr9 71180982 71181070 -52895102 + (TTTTC)n Simple_repeat Simple_repeat 4 90 0 2 1128 333 303 103 12 chr9 71181534 71181684 -52894488 - MIR SINE MIR -68 200 50 2 1128 222 245 0 0 chr9 71182815 71182864 -52893308 + T-rich Low_complexity Low_complexity 1 49 0 2 1128 200 297 0 0 chr9 71182951 71183015 -52893157 + (TTA)n Simple_repeat Simple_repeat 2 65 0 2 1128 779 280 57 18 chr9 71183068 71183348 -52892824 - B4 SINE B4 0 292 2 2 1128 225 0 218 0 chr9 71183503 71183558 -52892614 + (TCCTG)n Simple_repeat Simple_repeat 2 68 0 2 1128 209 159 0 22 chr9 71183940 71183985 -52892187 + GA-rich Low_complexity Low_complexity 1 44 0 2 1128 1447 193 24 4 chr9 71183985 71184240 -52891932 + RLTR17 LTR ERVK 167 426 -266 2 1128 318 188 31 0 chr9 71184237 71184301 -52891871 + 4.5SRNA scRNA scRNA 22 87 -7 2 1128 207 115 37 37 chr9 71184865 71184919 -52891253 + GA-rich Low_complexity Low_complexity 6 59 0 2 1128 192 272 141 47 chr9 71185075 71185160 -52891012 + L2 LINE L2 499 591 -2828 2 1128 23 0 0 0 chr9 71186447 71186470 -52889702 + AT_rich Low_complexity Low_complexity 1 23 0 2 1128 183 42 0 0 chr9 71186495 71186519 -52889653 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1128 21 0 0 0 chr9 71187157 71187178 -52888994 + AT_rich Low_complexity Low_complexity 1 21 0 2 1128 562 237 36 0 chr9 71187235 71187374 -52888798 - B1F SINE Alu -5 144 1 2 1128 22 0 0 30 chr9 71187413 71187424 -52888748 + AT_rich Low_complexity Low_complexity 1 11 0 2 1128 761 207 178 6 chr9 71187424 71187604 -52888568 + B3 SINE B2 1 211 -5 2 1128 22 0 0 30 chr9 71187604 71187625 -52888547 + AT_rich Low_complexity Low_complexity 1 21 0 2 1128 418 264 132 28 chr9 71187782 71187926 -52888246 + ORR1E LTR MaLR 24 182 -177 2 1128 277 186 161 11 chr9 71188565 71188652 -52887520 - MER53 DNA hAT -23 170 71 3 1128 267 103 0 0 chr9 71188652 71188691 -52887481 + (CAA)n Simple_repeat Simple_repeat 2 40 0 3 1128 315 180 33 0 chr9 71188694 71188755 -52887417 - MER53 DNA hAT -129 64 2 3 1128 204 67 0 0 chr9 71188994 71189024 -52887148 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1128 914 256 69 7 chr9 71189253 71189528 -52886644 + B4A SINE B4 1 292 0 3 1128 23 33 0 0 chr9 71189725 71189755 -52886417 + AT_rich Low_complexity Low_complexity 1 30 0 3 1128 183 80 0 0 chr9 71189797 71189822 -52886350 + (CAT)n Simple_repeat Simple_repeat 1 25 0 3 1128 303 359 89 52 chr9 71190599 71190869 -52885303 - MLT1G3 LTR MaLR -54 541 262 3 1128 226 378 100 8 chr9 71191113 71191233 -52884939 - MLT1G3 LTR MaLR -445 134 4 3 1128 362 289 308 0 chr9 71191248 71191404 -52884768 - L2 LINE L2 -558 2861 2658 3 1128 463 333 206 22 chr9 71191492 71191981 -52884191 - L2 LINE L2 -1036 2383 1805 3 1128 414 336 90 27 chr9 71192162 71192385 -52883787 + MIRb SINE MIR 29 265 -3 3 1128 532 317 15 136 chr9 71192570 71192696 -52883476 + B4A SINE B4 1 129 -163 3 1128 630 39 0 0 chr9 71192696 71192773 -52883399 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 3 1128 532 317 15 136 chr9 71192773 71192978 -52883194 + B4A SINE B4 130 292 0 3 1128 185 86 0 54 chr9 71192997 71193034 -52883138 + (CATA)n Simple_repeat Simple_repeat 4 38 0 3 1128 417 226 0 17 chr9 71193061 71193241 -52882931 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 1128 1034 102 17 6 chr9 71193264 71193441 -52882731 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1128 367 160 77 39 chr9 71194264 71194291 -52881881 + HAL1-3A_ME LINE L1 1941 1973 -885 3 1128 443 226 226 52 chr9 71194291 71194539 -52881633 + B4A SINE B4 2 292 0 3 1128 367 160 77 39 chr9 71194539 71194589 -52881583 + HAL1-3A_ME LINE L1 1974 2020 -838 3 1128 465 99 0 0 chr9 71194632 71194713 -52881459 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 3 1128 1219 105 5 27 chr9 71194719 71194905 -52881267 - B2_Mm1t SINE B2 -7 186 5 3 1128 256 250 0 0 chr9 71195244 71195300 -52880872 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1128 624 256 17 110 chr9 71195315 71195552 -52880620 - B3 SINE B2 0 216 2 3 1128 315 0 0 0 chr9 71196984 71197019 -52879153 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1128 398 283 191 17 chr9 71197673 71197914 -52878258 + L1M5 LINE L1 5517 5799 -374 3 1128 1450 245 21 33 chr9 71197937 71198266 -52877906 - ORR1E LTR MaLR -34 325 1 3 1128 900 236 93 37 chr9 71198369 71198638 -52877534 + B4A SINE B4 1 284 -8 3 1128 456 270 2 7 chr9 71199634 71199759 -52876413 + ID_B1 SINE B4 3 125 -167 3 1128 471 304 6 57 chr9 71199773 71199930 -52876242 - MER5A DNA MER1_type -40 149 1 3 1128 909 299 30 37 chr9 71200141 71200245 -52875927 + RMER15 LTR ERVL 267 374 -201 3 1128 257 68 0 22 chr9 71200245 71200290 -52875882 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 1128 909 299 30 37 chr9 71200290 71200484 -52875688 + RMER15 LTR ERVL 375 562 -13 3 1128 434 344 13 0 chr9 71200525 71200676 -52875496 - MER3 DNA MER1_type -33 176 24 3 1128 207 139 0 0 chr9 71201499 71201535 -52874637 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3 1128 859 275 21 25 chr9 71202894 71203133 -52873039 - B4A SINE B4 -54 238 1 3 1128 457 293 93 29 chr9 71203966 71204138 -52872034 - MER5A DNA MER1_type 0 189 7 3 1128 366 23 0 0 chr9 71205094 71205137 -52871035 + (CAGG)n Simple_repeat Simple_repeat 2 44 0 3 1128 320 360 26 13 chr9 71206599 71206751 -52869421 + MIRc SINE MIR 80 233 -35 3 1128 787 292 132 60 chr9 71207219 71207765 -52868407 + L1MC4a LINE L1 6636 7220 -662 3 1128 942 279 8 45 chr9 71207826 71208092 -52868080 + B4 SINE B4 37 292 0 3 1128 648 326 121 17 chr9 71208178 71208659 -52867513 + L1MC4a LINE L1 7273 7803 -79 3 1128 207 0 0 0 chr9 71209788 71209811 -52866361 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1128 454 162 14 0 chr9 71209811 71209885 -52866287 - ID4 SINE ID -7 76 2 3 1128 847 222 57 0 chr9 71210298 71210474 -52865698 + B3 SINE B2 3 188 -28 3 1128 387 41 0 0 chr9 71210474 71210523 -52865649 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1128 198 0 0 0 chr9 71210523 71210544 -52865628 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1128 835 253 25 5 chr9 71210608 71210807 -52865365 - B3 SINE B2 -13 203 1 3 1128 549 227 0 63 chr9 71210886 71211013 -52865159 - B4 SINE B4 0 292 174 3 1128 934 96 36 15 chr9 71210986 71211123 -52865049 - B2_Mm2 SINE B2 -55 140 1 3 1128 463 295 11 0 chr9 71211140 71211265 -52864907 - B4 SINE B4 -85 207 81 3 1128 1200 234 142 12 chr9 71211346 71211670 -52864502 + ORR1D1 LTR MaLR 1 366 -8 3 1128 207 0 0 0 chr9 71211670 71211693 -52864479 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1128 216 231 0 0 chr9 71211703 71211742 -52864430 - B4A SINE B4 -252 40 2 3 1128 532 303 65 19 chr9 71212288 71212503 -52863669 + MER115 DNA Tip100 423 647 -46 3 1128 241 239 7 28 chr9 71213770 71213912 -52862260 + CT-rich Low_complexity Low_complexity 3 141 0 3 1128 438 186 0 0 chr9 71213972 71214058 -52862114 + G-rich Low_complexity Low_complexity 5 90 0 3 1128 1473 39 0 0 chr9 71214058 71214238 -52861934 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 1128 714 233 0 0 chr9 71214980 71215113 -52861059 + RSINE1 SINE B4 4 136 -29 3 1128 1069 174 9 42 chr9 71215338 71215554 -52860618 - RLTR31_Mur LTR ERVK 0 553 345 3 1128 625 311 126 47 chr9 71215540 71215904 -52860268 - MT2A LTR ERVL -136 397 5 3 1128 403 289 11 149 chr9 71216096 71216271 -52859901 - MER20 DNA MER1_type -63 156 6 3 1128 842 201 73 34 chr9 71216417 71216623 -52859549 + B3 SINE B2 3 216 0 3 1128 577 185 319 0 chr9 71217724 71217859 -52858313 - B3A SINE B2 -16 182 5 3 1128 693 322 91 56 chr9 71217987 71218418 -52857754 + MER45B DNA Tip100 31 476 -564 3 1128 1200 61 0 0 chr9 71218512 71218659 -52857513 + B1_Mus1 SINE Alu 2 148 0 3 1128 351 292 169 34 chr9 71218728 71218905 -52857267 + Tigger7 DNA MER2_type 2276 2476 -15 3 1128 714 193 6 11 chr9 71218926 71219104 -52857068 + GA-rich Low_complexity Low_complexity 3 179 0 3 1128 1361 201 33 15 chr9 71219183 71219456 -52856716 + Lx8 LINE L1 6813 7090 -383 3 1128 524 316 96 0 chr9 71219687 71219937 -52856235 + MER45B DNA Tip100 598 871 -169 3 1128 400 292 5 43 chr9 71219961 71220147 -52856025 + G-rich Low_complexity Low_complexity 1 179 0 3 1128 245 308 8 123 chr9 71220153 71220275 -52855897 + MER45B DNA Tip100 933 1040 0 3 1128 639 303 88 8 chr9 71221409 71221672 -52854500 + B4A SINE B4 1 284 -8 3 1128 323 256 226 58 chr9 71222708 71222845 -52853327 + B3A SINE B2 1 160 -38 3 1128 183 100 0 0 chr9 71222849 71222879 -52853293 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1128 23 0 0 0 chr9 71223528 71223551 -52852621 + AT_rich Low_complexity Low_complexity 1 23 0 3 1128 714 202 0 0 chr9 71223882 71224060 -52852112 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 1128 485 193 199 7 chr9 71224076 71224227 -52851945 - B3A SINE B2 -16 182 3 3 1128 1195 55 0 0 chr9 71224674 71224820 -52851352 - B1_Mus2 SINE Alu 0 147 2 3 1128 378 0 0 0 chr9 71225462 71225504 -52850668 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1128 282 56 0 0 chr9 71225504 71225539 -52850633 + (CACG)n Simple_repeat Simple_repeat 1 36 0 3 1128 186 125 41 20 chr9 71226345 71226394 -52849778 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 3 1128 654 106 43 43 chr9 71226461 71226811 -52849361 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 3 1128 207 0 0 0 chr9 71227291 71227314 -52848858 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1128 249 196 0 0 chr9 71227498 71227549 -52848623 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1128 432 0 0 0 chr9 71227549 71227597 -52848575 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1128 435 234 166 47 chr9 71227762 71227955 -52848217 + ID_B1 SINE B4 1 216 -8 3 1128 210 226 18 36 chr9 71228037 71228092 -52848080 - MIRc SINE MIR -186 82 29 3 1128 974 201 5 16 chr9 71229517 71229704 -52846468 - B3 SINE B2 -27 189 5 3 1128 328 40 40 0 chr9 71230175 71230225 -52845947 + (GGA)n Simple_repeat Simple_repeat 3 54 0 3 1128 25 0 0 0 chr9 71230628 71230653 -52845519 + GC_rich Low_complexity Low_complexity 1 25 0 3 1128 276 30 0 0 chr9 71231094 71231127 -52845045 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1128 627 238 136 0 chr9 71231131 71231278 -52844894 - B3A SINE B2 -30 168 2 3 1128 291 215 165 0 chr9 71231570 71231649 -52844523 - RLTR16 LTR ERVK -12 493 402 3 1128 690 100 0 0 chr9 71231654 71231754 -52844418 + (GA)n Simple_repeat Simple_repeat 2 101 0 3 1128 2001 186 7 29 chr9 71231755 71232164 -52844008 - RLTR16 LTR ERVK -105 400 1 3 1128 612 59 0 0 chr9 71232286 71232371 -52843801 + (TC)n Simple_repeat Simple_repeat 1 85 0 3 1128 239 307 22 11 chr9 71232456 71232545 -52843627 + ORR1E LTR MaLR 270 359 0 3 1128 323 70 382 19 chr9 71232620 71232722 -52843450 - B2_Mm2 SINE B2 -10 185 47 3 1128 1166 78 12 0 chr9 71232778 71232945 -52843227 - B2_Mm1t SINE B2 -14 179 11 3 1128 1308 293 83 29 chr9 71233103 71233718 -52842454 + L1MA9 LINE L1 4384 5031 -1109 3 1128 917 264 9 4 chr9 71233723 71233955 -52842217 + B4 SINE B4 41 273 -19 3 1128 336 127 0 0 chr9 71233961 71234016 -52842156 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1128 328 242 31 21 chr9 71234046 71234143 -52842029 + L1MA9 LINE L1 5078 5175 -965 3 1128 341 292 10 0 chr9 71234154 71234250 -52841922 + PB1D10 SINE Alu 6 102 -15 3 1128 1116 254 118 19 chr9 71234277 71234650 -52841522 - MTD LTR MaLR -26 393 1 3 1128 1191 245 148 25 chr9 71234650 71235037 -52841135 + L1MA9 LINE L1 5196 5658 -654 3 1128 783 83 0 0 chr9 71235037 71235145 -52841027 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 1128 1191 259 172 33 chr9 71235145 71235396 -52840776 + L1MA9 LINE L1 5659 5936 -376 3 1128 584 193 97 2 chr9 71235396 71235534 -52840638 + B3A SINE B2 1 138 -55 3 1128 210 105 0 0 chr9 71235577 71235615 -52840557 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1128 704 281 105 50 chr9 71235640 71236003 -52840169 + L1MA9 LINE L1 5928 6310 -2 3 1128 576 261 64 15 chr9 71236551 71236753 -52839419 - B3 SINE B2 0 216 5 3 1128 207 0 0 0 chr9 71238855 71238878 -52837294 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1128 537 16 0 0 chr9 71238918 71238980 -52837192 + (CTTG)n Simple_repeat Simple_repeat 2 63 0 3 1128 2658 29 7 0 chr9 71239428 71239738 -52836434 - L1Md_F3 LINE L1 -2 6582 6271 4 1128 437 289 106 78 chr9 71240473 71240804 -52835368 + ORR1E LTR MaLR 2 341 -18 4 1128 448 273 162 12 chr9 71241129 71241296 -52834876 + Tigger7 DNA MER2_type 1 192 -2299 4 1128 237 180 0 0 chr9 71241500 71241550 -52834622 + GA-rich Low_complexity Low_complexity 3 52 0 4 1128 351 0 0 0 chr9 71241625 71241664 -52834508 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1128 279 0 0 0 chr9 71241893 71241924 -52834248 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1128 658 182 50 0 chr9 71241925 71242084 -52834088 + Tigger7 DNA MER2_type 2295 2461 -30 4 1128 214 333 84 38 chr9 71242358 71242489 -52833683 + L2b LINE L2 3218 3354 -21 4 1128 678 179 0 0 chr9 71242557 71242669 -52833503 + RSINE1 SINE B4 3 114 -51 4 1128 23 54 0 0 chr9 71242923 71242960 -52833212 + AT_rich Low_complexity Low_complexity 1 37 0 4 1128 883 185 106 0 chr9 71242969 71243158 -52833014 + B3 SINE B2 1 209 -7 4 1128 207 0 0 0 chr9 71243413 71243436 -52832736 + (GCTG)n Simple_repeat Simple_repeat 4 26 0 4 1128 315 0 0 0 chr9 71243774 71243809 -52832363 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1128 205 216 0 0 chr9 71244122 71244159 -52832013 - MIRc SINE MIR -121 147 111 4 1128 399 312 56 35 chr9 71245750 71246036 -52830136 + B4A SINE B4 1 292 0 4 1128 555 239 82 0 chr9 71246731 71246865 -52829307 + B3A SINE B2 10 154 -44 4 1128 231 36 0 0 chr9 71248907 71248935 -52827237 + (GGGGA)n Simple_repeat Simple_repeat 5 32 0 4 1128 202 292 15 15 chr9 71249186 71249252 -52826920 + GA-rich Low_complexity Low_complexity 3 68 0 4 1128 512 225 0 12 chr9 71249269 71249440 -52826732 + G-rich Low_complexity Low_complexity 2 170 0 4 1128 307 330 31 10 chr9 71249797 71249895 -52826277 - PB1 SINE Alu -11 116 17 4 1128 783 55 0 0 chr9 71249925 71250034 -52826138 + (TC)n Simple_repeat Simple_repeat 2 110 0 4 1128 331 185 0 0 chr9 71250113 71250167 -52826005 - B4A SINE B4 -81 211 158 4 1128 239 191 0 0 chr9 71250180 71250227 -52825945 - MTEa LTR MaLR -3 376 330 4 1128 448 286 25 8 chr9 71250590 71250710 -52825462 - B4A SINE B4 -170 122 1 4 1128 604 304 17 13 chr9 71250735 71250965 -52825207 - L1MB3 LINE L1 -2 6181 5951 4 1128 285 270 0 0 chr9 71251363 71251426 -52824746 - L1MB3 LINE L1 -683 5488 5426 4 1128 658 268 51 5 chr9 71251452 71251647 -52824525 - ID_B1 SINE B4 -19 205 2 4 1128 255 238 107 0 chr9 71251710 71251794 -52824378 + MER58B DNA MER1_type 173 265 -76 4 1128 1227 54 0 0 chr9 71253055 71253202 -52822970 + B1_Mm SINE Alu 1 147 0 4 1128 249 200 0 0 chr9 71253393 71253443 -52822729 + MTEa LTR MaLR 330 379 0 4 1128 423 0 0 0 chr9 71254909 71254956 -52821216 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1128 572 286 107 15 chr9 71255003 71255209 -52820963 - B4 SINE B4 -12 280 56 4 1128 224 185 0 36 chr9 71255242 71255326 -52820846 + T-rich Low_complexity Low_complexity 1 81 0 4 1128 911 216 23 14 chr9 71255328 71255549 -52820623 - ID_B1 SINE B4 0 224 2 4 1128 780 212 10 72 chr9 71256065 71256273 -52819899 + B3A SINE B2 4 198 0 4 1128 470 216 211 74 chr9 71256293 71256335 -52819837 + B3 SINE B2 1 40 -176 4 1128 1020 96 0 22 chr9 71256335 71256474 -52819698 + B1_Mus1 SINE Alu 2 137 -11 4 1128 360 0 0 0 chr9 71256475 71256515 -52819657 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1128 470 216 211 74 chr9 71256515 71256622 -52819550 + B3 SINE B2 41 164 -52 4 1128 603 130 0 0 chr9 71256622 71256722 -52819450 + (TA)n Simple_repeat Simple_repeat 1 100 0 4 1128 470 216 211 74 chr9 71256722 71256759 -52819413 + B3 SINE B2 165 215 -1 4 1128 1067 217 19 0 chr9 71257829 71258041 -52818131 - B3 SINE B2 0 216 1 4 1128 557 273 7 47 chr9 71258503 71258653 -52817519 + B3A SINE B2 9 152 -46 4 1128 363 136 0 0 chr9 71258720 71258779 -52817393 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1128 239 324 0 0 chr9 71259694 71259765 -52816407 + MIRc SINE MIR 96 166 -102 4 1128 33 0 0 0 chr9 71259783 71259816 -52816356 + AT_rich Low_complexity Low_complexity 1 33 0 4 1128 569 226 99 19 chr9 71259868 71260030 -52816142 - B3A SINE B2 -17 181 7 4 1128 27 0 0 0 chr9 71260042 71260069 -52816103 + AT_rich Low_complexity Low_complexity 1 27 0 4 1128 22 0 0 0 chr9 71261094 71261116 -52815056 + AT_rich Low_complexity Low_complexity 1 22 0 4 1128 1775 160 77 17 chr9 71261877 71262035 -52814137 + ORR1D1 LTR MaLR 1 166 -208 4 1128 540 45 0 0 chr9 71262035 71262102 -52814070 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1128 1775 160 77 17 chr9 71262102 71262293 -52813879 + ORR1D1 LTR MaLR 167 370 -4 4 1128 452 319 0 0 chr9 71262480 71262621 -52813551 - B3A SINE B2 -20 178 38 4 1128 272 264 0 86 chr9 71262831 71262947 -52813225 - L1MD3 LINE L1 -84 7911 7806 4 1128 332 197 30 0 chr9 71263133 71263199 -52812973 + B3 SINE B2 1 68 -148 4 1128 396 0 0 0 chr9 71263233 71263277 -52812895 + (CATA)n Simple_repeat Simple_repeat 3 46 0 4 1128 712 187 24 15 chr9 71264202 71264546 -52811626 + (TG)n Simple_repeat Simple_repeat 1 347 0 4 1128 954 235 65 30 chr9 71264603 71264866 -52811306 - B4 SINE B4 -20 272 1 4 1128 429 163 0 0 chr9 71265746 71265838 -52810334 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1128 688 281 187 0 chr9 71265838 71266084 -52810088 - B4 SINE B4 0 292 1 4 1128 1579 117 123 3 chr9 71266933 71267225 -52808947 + IAPEY3_LTR LTR ERVK 1 327 -5 4 1128 922 53 120 8 chr9 71267418 71267551 -52808621 - B1_Mus1 SINE Alu 0 148 1 4 1128 378 255 130 7 chr9 71267627 71267781 -52808391 + L1MB7 LINE L1 5838 6010 -174 4 1128 300 247 43 86 chr9 71267820 71267913 -52808259 + RSINE1 SINE B4 74 162 -3 4 1128 335 333 22 0 chr9 71267949 71268084 -52808088 + L1MB7 LINE L1 5998 6135 -49 4 1128 270 0 0 0 chr9 71268402 71268432 -52807740 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1128 252 0 0 0 chr9 71268432 71268459 -52807713 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1128 4509 10 2 0 chr9 71268881 71269373 -52806799 + MT2_Mm LTR ERVL 1 493 0 4 1128 26219 9 11 0 chr9 71269373 71272241 -52803931 + MERVL-int LTR ERVL 1 2901 -2584 4 1128 2964 47 3 5 chr9 71272241 71272609 -52803563 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1128 54316 19 12 0 chr9 71272609 71278975 -52797197 + IAPEz-int LTR ERVK 8 6481 0 4 1128 2984 47 3 5 chr9 71278975 71279343 -52796829 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1128 22303 21 0 0 chr9 71279343 71281807 -52794365 + MERVL-int LTR ERVL 2896 5360 -125 4 1128 403 167 46 35 chr9 71281807 71281894 -52794278 + ORR1A3-int LTR MaLR 553 640 -1323 4 1128 319 0 0 0 chr9 71281894 71281932 -52794240 + MERVL-int LTR ERVL 5448 5485 0 4 1128 4510 10 2 0 chr9 71281932 71282424 -52793748 + MT2_Mm LTR ERVL 1 493 0 4 1128 2345 113 11 9 chr9 71282654 71283002 -52793170 - ORR1B2 LTR MaLR -2 365 17 4 1128 348 371 113 70 chr9 71283197 71283490 -52792682 + B4 SINE B4 2 290 -2 4 1128 613 251 130 12 chr9 71283718 71283972 -52792200 + MER33 DNA MER1_type 7 290 -34 4 1128 345 281 24 16 chr9 71283972 71284095 -52792077 + L1MB3 LINE L1 5709 5832 -339 4 1128 956 282 31 85 chr9 71284097 71284532 -52791640 - MTE2a LTR MaLR -14 405 1 4 1128 683 287 136 16 chr9 71284538 71284846 -52791326 + L1MB3 LINE L1 5836 6180 -3 4 1128 678 203 0 0 chr9 71286411 71286559 -52789613 + (CAGA)n Simple_repeat Simple_repeat 1 148 0 4 1128 396 0 0 0 chr9 71286627 71286671 -52789501 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1128 260 315 33 0 chr9 71287760 71287852 -52788320 - ORR1E LTR MaLR -259 100 6 4 1128 310 211 63 38 chr9 71287951 71288030 -52788142 + PB1D10 SINE Alu 37 117 0 4 1128 505 295 28 14 chr9 71288031 71288172 -52788000 + ID_B1 SINE B4 81 223 -1 4 1128 491 90 167 0 chr9 71288446 71288524 -52787648 + ORR1D2 LTR MaLR 1 91 -279 4 1128 277 228 49 36 chr9 71288521 71288605 -52787567 + MTD LTR MaLR 295 404 -15 4 1128 846 183 199 6 chr9 71288932 71289108 -52787064 - B3 SINE B2 -6 210 1 4 1128 562 285 80 0 chr9 71289181 71289318 -52786854 + B3A SINE B2 4 151 -47 4 1128 435 38 0 0 chr9 71289322 71289375 -52786797 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1128 2109 210 84 22 chr9 71290029 71290108 -52786064 - MT2A LTR ERVL 0 533 442 4 1128 243 0 0 0 chr9 71290108 71290135 -52786037 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1128 2109 210 84 22 chr9 71290135 71290557 -52785615 - MT2A LTR ERVL -92 441 1 4 1128 211 328 0 0 chr9 71290575 71290633 -52785539 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1128 427 286 16 48 chr9 71290654 71290808 -52785364 - B3A SINE B2 0 216 63 4 1128 426 247 189 56 chr9 71290751 71290931 -52785241 - B4A SINE B4 -88 204 1 4 1128 189 0 0 0 chr9 71290937 71290958 -52785214 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 4 1128 416 264 75 14 chr9 71291319 71291465 -52784707 - MLT1A1 LTR MaLR -6 402 248 4 1128 214 323 55 20 chr9 71292166 71292300 -52783872 - MIRc SINE MIR -35 173 33 4 1128 824 219 12 24 chr9 71292300 71292449 -52783723 - MTE2b LTR MaLR 0 379 233 4 1128 673 186 7 58 chr9 71292449 71292586 -52783586 - B1_Mur1 SINE Alu -15 134 5 4 1128 824 235 15 46 chr9 71292586 71292623 -52783549 - MTE2b LTR MaLR -147 232 202 4 1128 596 112 291 21 chr9 71292822 71292966 -52783206 - B2_Mm2 SINE B2 -6 189 7 4 1128 308 33 65 16 chr9 71293046 71293108 -52783064 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 4 1128 887 255 5 14 chr9 71296335 71296546 -52779626 + ID_B1 SINE B4 2 210 -14 4 1128 971 139 6 0 chr9 71296563 71296729 -52779443 + (GAGAA)n Simple_repeat Simple_repeat 2 168 0 4 1128 297 0 0 0 chr9 71296734 71296767 -52779405 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1128 387 0 0 0 chr9 71296767 71296809 -52779363 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1128 402 57 0 0 chr9 71297864 71297917 -52778255 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1128 747 265 143 19 chr9 71297921 71298179 -52777993 - B4A SINE B4 0 292 3 4 1128 244 211 177 10 chr9 71299845 71299941 -52776231 + MER58B DNA MER1_type 229 340 -1 4 1128 325 320 210 6 chr9 71300319 71300495 -52775677 - MIR SINE MIR -27 235 24 4 1128 198 0 0 0 chr9 71301611 71301633 -52774539 + (G)n Simple_repeat Simple_repeat 1 22 0 4 1128 505 228 71 24 chr9 71302584 71302710 -52773462 + RSINE1 SINE B4 2 133 -32 5 1128 204 125 0 0 chr9 71302758 71302790 -52773382 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1128 877 190 201 0 chr9 71302833 71303012 -52773160 + B3 SINE B2 1 215 -1 5 1129 188 200 0 48 chr9 71303231 71303273 -52772899 + L4 LINE RTE 1621 1660 -369 5 1129 567 0 0 0 chr9 71303921 71303984 -52772188 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 1129 502 239 37 53 chr9 71304003 71304246 -52771926 + L1M2 LINE L1 2955 3193 -2950 5 1129 1155 83 0 27 chr9 71305445 71305630 -52770542 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1129 401 179 0 12 chr9 71305637 71305722 -52770450 + GA-rich Low_complexity Low_complexity 4 87 0 5 1129 267 280 0 0 chr9 71305753 71305828 -52770344 - B4A SINE B4 -2 290 216 5 1129 652 255 33 124 chr9 71305872 71306038 -52770134 + B4A SINE B4 71 226 -66 5 1129 1347 72 0 0 chr9 71306038 71306218 -52769954 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1129 652 255 33 124 chr9 71306218 71306293 -52769879 + B4A SINE B4 227 290 -2 5 1129 364 279 108 12 chr9 71306884 71307051 -52769121 - MER53 DNA hAT 0 193 11 5 1129 447 19 0 0 chr9 71307258 71307310 -52768862 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1129 949 64 80 0 chr9 71307321 71307446 -52768726 + B1_Mus1 SINE Alu 2 136 -12 5 1129 261 0 0 0 chr9 71307449 71307478 -52768694 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1129 768 258 65 21 chr9 71308284 71308470 -52767702 - B4A SINE B4 0 292 99 5 1129 890 213 65 10 chr9 71308484 71308683 -52767489 - B3 SINE B2 -6 210 1 5 1129 235 222 31 16 chr9 71308725 71308789 -52767383 - MER46C DNA MER2_type -10 328 264 5 1129 329 250 23 35 chr9 71308970 71309057 -52767115 + B4A SINE B4 2 87 -205 5 1129 428 157 126 81 chr9 71309091 71309202 -52766970 + PB1D9 SINE Alu 3 118 -2 5 1129 942 229 20 25 chr9 71309205 71309402 -52766770 + B4 SINE B4 81 276 -16 5 1129 297 0 0 0 chr9 71309418 71309451 -52766721 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1129 688 210 135 85 chr9 71310023 71310283 -52765889 - B4 SINE B4 -18 274 2 5 1129 27 0 0 0 chr9 71310578 71310605 -52765567 + AT_rich Low_complexity Low_complexity 1 27 0 5 1129 323 297 30 0 chr9 71311996 71312097 -52764075 + MER103 DNA DNA 20 123 -43 5 1129 1270 102 37 16 chr9 71312650 71312840 -52763332 + B2_Mm2 SINE B2 2 195 0 5 1129 234 0 0 0 chr9 71312856 71312882 -52763290 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1129 201 94 0 0 chr9 71313105 71313137 -52763035 + (GCTG)n Simple_repeat Simple_repeat 2 33 0 5 1129 543 56 0 0 chr9 71313140 71313211 -52762961 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 5 1129 277 209 0 29 chr9 71313336 71313410 -52762762 + ORR1E LTR MaLR 255 322 -57 5 1129 242 56 28 0 chr9 71313416 71313452 -52762720 + (GGGTG)n Simple_repeat Simple_repeat 3 39 0 5 1129 693 163 256 0 chr9 71313699 71313871 -52762301 + B3 SINE B2 1 216 0 5 1129 3007 48 24 0 chr9 71314453 71314824 -52761348 - L1Md_F3 LINE L1 -14 6570 6191 5 1129 1195 49 0 0 chr9 71314825 71314969 -52761203 + L1_Mm LINE L1 2653 2796 -3087 5 1129 711 164 0 0 chr9 71315000 71315128 -52761044 + CT-rich Low_complexity Low_complexity 1 128 0 5 1129 219 325 95 47 chr9 71315240 71315428 -52760744 + MIRm SINE MIR 1 189 -79 5 1129 238 247 178 11 chr9 71315911 71316001 -52760171 - MIR SINE MIR -51 211 107 5 1129 522 296 59 43 chr9 71316003 71316189 -52759983 + LTR16A LTR ERVL 33 221 -230 5 1129 684 313 58 74 chr9 71316189 71316421 -52759751 - MLT1C LTR MaLR 0 467 235 5 1129 640 0 25 0 chr9 71316421 71316501 -52759671 + (TC)n Simple_repeat Simple_repeat 2 83 0 5 1129 684 313 58 74 chr9 71316501 71316549 -52759623 - MLT1C LTR MaLR -233 234 189 5 1129 876 246 117 15 chr9 71316549 71316813 -52759359 - B4A SINE B4 0 292 2 5 1129 684 313 58 74 chr9 71316813 71316963 -52759209 - MLT1C LTR MaLR -279 188 43 5 1129 510 60 24 12 chr9 71317217 71317301 -52758871 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 5 1129 191 167 0 23 chr9 71317312 71317355 -52758817 + G-rich Low_complexity Low_complexity 5 46 0 5 1129 869 244 83 0 chr9 71317392 71317585 -52758587 + B4A SINE B4 1 209 -83 5 1129 475 236 388 44 chr9 71317608 71317845 -52758327 - MTD LTR MaLR -41 378 86 5 1129 450 0 0 0 chr9 71318299 71318349 -52757823 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1129 1165 255 83 23 chr9 71318923 71319272 -52756900 - ORR1D2 LTR MaLR 0 370 1 5 1129 316 208 13 53 chr9 71319360 71319436 -52756736 - Lx8 LINE L1 -247 7226 7154 5 1129 354 287 109 47 chr9 71319561 71319689 -52756483 - RSINE1 SINE B4 -7 158 23 5 1129 729 47 9 19 chr9 71319770 71319878 -52756294 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 5 1129 717 70 0 0 chr9 71320169 71320269 -52755903 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 5 1129 1158 75 0 13 chr9 71320769 71320909 -52755263 + B1_Mus2 SINE Alu 1 140 -7 5 1129 705 56 0 0 chr9 71320909 71320999 -52755173 + (GA)n Simple_repeat Simple_repeat 2 91 0 5 1129 432 0 0 0 chr9 71320999 71321046 -52755126 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5 1129 771 235 108 24 chr9 71321137 71321386 -52754786 + B4A SINE B4 2 271 -21 5 1129 246 32 0 0 chr9 71321907 71321938 -52754234 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1129 963 237 43 0 chr9 71322275 71322482 -52753690 + B3 SINE B2 1 216 0 5 1129 712 207 7 58 chr9 71322504 71322663 -52753509 + B2_Mm2 SINE B2 2 154 -39 5 1129 306 0 0 0 chr9 71322663 71322697 -52753475 + (CATA)n Simple_repeat Simple_repeat 2 35 0 5 1129 553 265 17 45 chr9 71322697 71322715 -52753457 + B2_Mm1t SINE B2 155 173 -20 5 1129 411 104 0 17 chr9 71323005 71323114 -52753058 - B2_Mm2 SINE B2 -6 189 47 5 1129 1038 94 7 0 chr9 71323135 71323273 -52752899 - B2_Mm2 SINE B2 -47 148 10 5 1129 450 0 0 0 chr9 71323274 71323324 -52752848 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1129 230 143 48 0 chr9 71323333 71323375 -52752797 - B3 SINE B2 -98 118 75 5 1129 1022 216 164 58 chr9 71323386 71323696 -52752476 + ORR1D2 LTR MaLR 23 365 -5 5 1129 447 220 60 0 chr9 71323693 71323793 -52752379 + B3 SINE B2 111 216 0 5 1129 1174 63 0 0 chr9 71324071 71324213 -52751959 + B1_Mus2 SINE Alu 1 142 -5 5 1129 671 196 113 30 chr9 71324510 71324678 -52751494 + B3A SINE B2 1 182 -16 5 1129 266 221 0 139 chr9 71324792 71324871 -52751301 + MT2B LTR ERVL 173 240 -361 5 1129 494 261 0 50 chr9 71324802 71324923 -52751249 + B1_Mur2 SINE Alu 19 133 -16 5 1129 216 0 0 0 chr9 71325241 71325265 -52750907 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1129 250 279 49 0 chr9 71325483 71325544 -52750628 + PB1D10 SINE Alu 47 110 -7 5 1129 424 205 13 0 chr9 71325558 71325636 -52750536 + ID4 SINE ID 4 82 -1 5 1129 969 54 62 0 chr9 71328068 71328198 -52747974 + B1_Mus1 SINE Alu 5 142 -6 5 1129 340 215 4 39 chr9 71328533 71328631 -52747541 - B1_Mur1 SINE Alu -5 144 22 5 1129 918 126 75 12 chr9 71329546 71329707 -52746465 - URR1A DNA MER1_type -8 218 48 5 1129 26 30 0 0 chr9 71331727 71331760 -52744412 + AT_rich Low_complexity Low_complexity 1 33 0 5 1129 1162 51 0 0 chr9 71331906 71332044 -52744128 + B1_Mus2 SINE Alu 1 138 -9 5 1129 368 315 23 23 chr9 71332361 71332491 -52743681 + Charlie1b DNA MER1_type 382 511 -12 5 1129 21 36 0 0 chr9 71333377 71333405 -52742767 + GC_rich Low_complexity Low_complexity 1 28 0 5 1129 24 67 0 0 chr9 71333639 71333684 -52742488 + GC_rich Low_complexity Low_complexity 1 45 0 5 1129 547 281 73 6 chr9 71334067 71334246 -52741926 + B3A SINE B2 1 191 -7 5 1129 367 198 339 9 chr9 71334315 71334427 -52741745 + B1_Mur2 SINE Alu 1 149 0 5 1129 412 309 0 62 chr9 71334445 71334590 -52741582 + L1M5 LINE L1 5459 5594 -585 5 1129 406 286 142 0 chr9 71334611 71334784 -52741388 - L1MD LINE L1 -359 5820 5616 5 1129 295 267 42 25 chr9 71335934 71336053 -52740119 - L1MD LINE L1 -557 5622 5502 5 1129 1202 249 91 6 chr9 71336174 71336493 -52739679 + MTEa LTR MaLR 1 346 -33 5 1129 470 196 0 9 chr9 71336493 71336520 -52739652 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 1129 3467 20 15 7 chr9 71336520 71336928 -52739244 - IAPLTR2a LTR ERVK 0 411 1 5 1129 470 196 0 9 chr9 71336928 71337008 -52739164 + (TA)n Simple_repeat Simple_repeat 1 80 0 5 1129 1269 47 98 11 chr9 71337126 71337300 -52738872 + B2_Mm2 SINE B2 2 190 -5 5 1129 229 278 103 70 chr9 71337798 71338011 -52738161 - RMER10A LTR ERVL 0 442 223 5 1129 1101 172 143 197 chr9 71338379 71338993 -52737179 - RLTR19-int LTR ERVK -2042 4095 3515 5 1129 1167 68 0 0 chr9 71338999 71339146 -52737026 + B1_Mus1 SINE Alu 1 147 -1 5 1129 1669 27 0 0 chr9 71339214 71339399 -52736773 - B2_Mm1a SINE B2 -7 186 2 5 1129 1182 112 0 36 chr9 71339407 71339601 -52736571 - B2_Mm2 SINE B2 -7 188 2 5 1129 923 270 77 71 chr9 71339649 71340168 -52736004 - RLTR19-int LTR ERVK -2953 3184 2663 5 1129 534 326 5 48 chr9 71342050 71342256 -52733916 - B3A SINE B2 0 198 2 5 1129 378 0 0 0 chr9 71342491 71342533 -52733639 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1129 524 210 24 24 chr9 71342642 71342769 -52733403 + RSINE1 SINE B4 4 130 -35 5 1129 220 279 25 0 chr9 71342770 71342849 -52733323 + (CAGA)n Simple_repeat Simple_repeat 1 81 0 5 1129 1633 131 7 3 chr9 71343547 71343830 -52732342 - RLTR28 LTR ERVL 0 524 242 5 1129 1176 62 0 0 chr9 71343830 71343976 -52732196 - B1_Mus1 SINE Alu 0 148 3 5 1129 1633 131 7 3 chr9 71343976 71343990 -52732182 - RLTR28 LTR ERVL -283 241 227 5 1129 4111 168 26 4 chr9 71343990 71344095 -52732077 - RMER1B Other Other -6 1060 957 5 1129 207 0 0 0 chr9 71344095 71344118 -52732054 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1129 4111 178 33 8 chr9 71344118 71344861 -52731311 - RMER1B Other Other -110 956 143 5 1129 295 222 27 14 chr9 71345045 71345118 -52731054 + RSINE1 SINE B4 3 76 -89 6 1129 279 299 127 50 chr9 71345243 71345415 -52730757 + B4 SINE B4 109 281 -11 6 1129 513 115 0 0 chr9 71345429 71345507 -52730665 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1129 204 209 23 0 chr9 71346306 71346349 -52729823 + C-rich Low_complexity Low_complexity 2 45 0 6 1129 192 125 0 0 chr9 71347185 71347217 -52728955 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 6 1129 219 114 0 0 chr9 71347262 71347297 -52728875 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1129 1166 62 0 7 chr9 71347308 71347446 -52728726 + B1_Mm SINE Alu 1 138 -9 6 1129 222 0 79 0 chr9 71347446 71347484 -52728688 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1129 236 380 36 5 chr9 71348254 71348447 -52727725 + L1M5 LINE L1 5498 5696 -428 6 1129 23 0 0 0 chr9 71348540 71348563 -52727609 + AT_rich Low_complexity Low_complexity 1 23 0 6 1129 647 201 99 14 chr9 71348567 71348708 -52727464 + B3A SINE B2 2 154 -44 6 1129 510 103 0 0 chr9 71348708 71348786 -52727386 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1129 1092 212 28 0 chr9 71348815 71349027 -52727145 + ID_B1 SINE B4 2 219 -5 6 1129 1254 114 11 0 chr9 71349096 71349272 -52726900 - B2_Mm1a SINE B2 -14 179 2 6 1129 231 360 110 18 chr9 71349367 71349569 -52726603 - MIRb SINE MIR -14 254 18 6 1129 285 286 48 100 chr9 71349790 71350064 -52726108 - B4 SINE B4 -7 285 3 6 1129 210 244 0 0 chr9 71350236 71350281 -52725891 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 1129 281 256 0 25 chr9 71350795 71350875 -52725297 + B4 SINE B4 8 85 -207 6 1129 429 169 0 0 chr9 71350878 71350961 -52725211 + GA-rich Low_complexity Low_complexity 2 84 0 6 1129 1221 106 0 0 chr9 71350963 71351143 -52725029 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1129 659 332 5 50 chr9 71351187 71351406 -52724766 + B4 SINE B4 81 289 -3 6 1129 541 230 6 6 chr9 71351470 71351649 -52724523 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 1129 601 211 24 8 chr9 71351775 71351899 -52724273 - B3A SINE B2 -71 127 2 6 1129 770 246 158 0 chr9 71353175 71353459 -52722713 + MLT1A0 LTR MaLR 1 329 -36 6 1129 346 280 155 143 chr9 71353475 71353631 -52722541 + MLT1J2 LTR MaLR 66 210 -238 6 1129 1275 27 0 0 chr9 71353631 71353778 -52722394 - B1_Mm SINE Alu 0 147 1 6 1129 346 280 155 143 chr9 71353778 71353963 -52722209 + MLT1J2 LTR MaLR 211 411 -37 6 1129 231 269 0 0 chr9 71354118 71354170 -52722002 + RMER15 LTR ERVL 2 53 -522 6 1129 1509 227 125 26 chr9 71354228 71354402 -52721770 + RMER15 LTR ERVL 30 205 -370 6 1129 705 208 0 51 chr9 71354402 71354559 -52721613 + B1_Mur1 SINE Alu 1 149 0 6 1129 1509 227 125 26 chr9 71354559 71354881 -52721291 + RMER15 LTR ERVL 206 575 0 6 1129 189 274 39 0 chr9 71355009 71355060 -52721112 + L2c LINE L2 3300 3352 -35 6 1129 222 117 0 62 chr9 71355575 71355639 -52720533 + A-rich Low_complexity Low_complexity 3 62 0 6 1129 1104 187 66 0 chr9 71355789 71355987 -52720185 + B3 SINE B2 1 211 -5 6 1129 1318 83 22 11 chr9 71356026 71356209 -52719963 + B2_Mm2 SINE B2 4 188 -7 6 1129 400 290 32 27 chr9 71357105 71357293 -52718879 + RMER15 LTR ERVL 347 535 -40 6 1129 194 327 37 9 chr9 71357438 71357546 -52718626 - MIRm SINE MIR -114 162 52 6 1129 1187 75 0 0 chr9 71357590 71357737 -52718435 + B1_Mus2 SINE Alu 1 147 0 6 1129 485 246 109 46 chr9 71359237 71359412 -52716760 - B3A SINE B2 -30 186 1 6 1129 411 262 94 8 chr9 71359762 71359889 -52716283 + ID_B1 SINE B4 82 219 -5 6 1129 22 56 0 0 chr9 71359924 71359960 -52716212 + AT_rich Low_complexity Low_complexity 1 36 0 6 1129 486 245 173 0 chr9 71360084 71360223 -52715949 - RSINE1 SINE B4 0 165 3 6 1129 199 167 0 0 chr9 71360668 71360704 -52715468 + L2a LINE L2 3377 3412 -14 6 1129 2286 157 0 13 chr9 71361997 71362384 -52713788 - MTC LTR MaLR -39 382 1 6 1129 243 0 0 0 chr9 71362623 71362650 -52713522 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 6 1129 550 241 110 0 chr9 71363187 71363332 -52712840 + RSINE1 SINE B4 3 163 -2 6 1129 216 0 0 0 chr9 71363342 71363366 -52712806 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1129 335 228 29 19 chr9 71363447 71363550 -52712622 - L1MC LINE L1 -2078 5804 5701 6 1129 774 197 8 0 chr9 71363911 71364043 -52712129 - B3A SINE B2 -65 133 1 6 1129 1224 48 0 0 chr9 71364228 71364374 -52711798 + B1_Mus2 SINE Alu 2 147 0 6 1129 189 0 0 0 chr9 71364374 71364395 -52711777 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1129 764 261 22 5 chr9 71364517 71364702 -52711470 + B3 SINE B2 1 188 -28 6 1129 486 120 0 0 chr9 71364707 71364782 -52711390 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 1129 345 24 0 0 chr9 71365020 71365062 -52711110 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1129 247 294 0 14 chr9 71365659 71365728 -52710444 + B3A SINE B2 73 140 -58 6 1129 1220 114 11 0 chr9 71365758 71365933 -52710239 + B2_Mm1a SINE B2 3 179 -14 6 1129 320 111 0 36 chr9 71365965 71366021 -52710151 + B2_Mm2 SINE B2 47 100 -95 6 1129 1353 114 71 0 chr9 71366293 71366503 -52709669 - URR1B DNA MER1_type 0 225 1 6 1129 374 357 55 24 chr9 71366503 71366793 -52709379 + L1MEf LINE L1 605 903 -5297 6 1129 205 184 50 50 chr9 71366813 71366933 -52709239 + (TATAA)n Simple_repeat Simple_repeat 3 122 0 6 1129 313 296 0 0 chr9 71366963 71367051 -52709121 + L1MEf LINE L1 926 1013 -5187 6 1129 452 267 12 50 chr9 71367056 71367269 -52708903 + B4 SINE B4 2 235 -57 6 1129 243 189 0 0 chr9 71367314 71367367 -52708805 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1129 600 179 37 7 chr9 71367446 71367581 -52708591 + ID_B1 SINE B4 79 217 -7 6 1129 306 0 0 0 chr9 71367953 71367987 -52708185 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1129 1375 73 45 0 chr9 71368347 71368526 -52707646 - B2_Mm2 SINE B2 -7 188 2 6 1129 879 200 31 21 chr9 71368550 71368744 -52707428 - B3 SINE B2 0 216 21 6 1129 384 240 42 0 chr9 71368797 71368893 -52707279 - RSINE1 SINE B4 0 165 66 6 1129 911 218 0 41 chr9 71368949 71369145 -52707027 - B3A SINE B2 -10 188 1 6 1129 861 229 145 16 chr9 71369793 71370041 -52706131 - B4 SINE B4 -8 284 5 6 1129 507 230 52 0 chr9 71370959 71371094 -52705078 + ID_B1 SINE B4 81 222 -2 6 1129 197 225 0 0 chr9 71371702 71371742 -52704430 + MIRb SINE MIR 221 260 -8 6 1129 846 217 96 5 chr9 71372810 71373009 -52703163 - ID_B1 SINE B4 0 224 8 6 1129 878 188 91 10 chr9 71373956 71374155 -52702017 - B3 SINE B2 -1 215 1 6 1129 937 153 0 20 chr9 71374177 71374330 -52701842 + B1_Mur4 SINE Alu 1 150 0 6 1129 855 101 0 63 chr9 71374345 71374536 -52701636 + GA-rich Low_complexity Low_complexity 2 180 0 6 1129 233 263 84 66 chr9 71374608 71374775 -52701397 + L1MC5 LINE L1 7629 7798 -163 6 1129 413 266 147 23 chr9 71374891 71375068 -52701104 - ID_B1 SINE B4 -8 216 18 6 1129 873 296 36 13 chr9 71375292 71375597 -52700575 + L1M5 LINE L1 5494 5805 -319 6 1129 450 0 0 0 chr9 71375629 71375679 -52700493 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1129 770 319 42 0 chr9 71375929 71376192 -52699980 - B4A SINE B4 0 292 19 6 1129 515 171 0 0 chr9 71376248 71376330 -52699842 - ID4_ SINE ID 0 83 2 6 1129 732 330 35 13 chr9 71376630 71376943 -52699229 + MER2 DNA MER2_type 25 344 -1 6 1129 331 245 43 0 chr9 71377171 71377265 -52698907 - ID_B1 SINE B4 -126 98 1 6 1129 539 198 54 23 chr9 71377280 71377409 -52698763 - ID_B1 SINE B4 -2 222 90 6 1129 856 189 80 11 chr9 71377840 71378027 -52698145 + B3 SINE B2 2 201 -15 6 1129 361 273 239 23 chr9 71378320 71378496 -52697676 + B4 SINE B4 2 215 -77 6 1129 374 85 17 0 chr9 71378533 71378592 -52697580 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 6 1129 352 287 35 0 chr9 71378655 71378798 -52697374 + (CA)n Simple_repeat Simple_repeat 1 148 0 6 1129 705 206 191 21 chr9 71379302 71379491 -52696681 + ID_B1 SINE B4 1 221 -3 6 1129 439 312 0 21 chr9 71379511 71379652 -52696520 + B1F SINE Alu 12 149 0 6 1129 414 0 0 0 chr9 71379985 71380031 -52696141 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1129 651 246 150 0 chr9 71380031 71380218 -52695954 - ID_B1 SINE B4 -8 216 2 6 1129 395 245 27 36 chr9 71380220 71380330 -52695842 + MER57E1 LTR ERV1 205 313 -59 6 1129 600 240 127 11 chr9 71380946 71381127 -52695045 - B3 SINE B2 -11 205 4 6 1129 252 243 95 0 chr9 71381507 71381581 -52694591 - ID4_ SINE ID 0 83 3 6 1129 203 133 0 0 chr9 71382453 71382483 -52693689 + (G)n Simple_repeat Simple_repeat 1 30 0 6 1129 181 53 79 0 chr9 71382535 71382573 -52693599 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 6 1129 730 184 143 6 chr9 71382636 71382811 -52693361 - B4A SINE B4 -89 203 5 6 1129 504 124 162 0 chr9 71382841 71382946 -52693226 - ID_B1 SINE B4 -1 223 102 6 1129 300 200 172 104 chr9 71382946 71382975 -52693197 - B1_Mus1 SINE Alu 0 148 6 6 1129 599 269 7 19 chr9 71384305 71384483 -52691689 - L2a LINE L2 -1 3425 3204 6 1129 1150 171 10 5 chr9 71387272 71387477 -52688695 + ID_B1 SINE B4 8 213 -11 6 1129 184 0 30 61 chr9 71387484 71387517 -52688655 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 6 1129 255 239 0 0 chr9 71387801 71387868 -52688304 + (TA)n Simple_repeat Simple_repeat 1 67 0 7 1129 217 217 14 55 chr9 71387877 71387950 -52688222 - MIR SINE MIR -69 193 124 7 1129 1582 116 4 0 chr9 71388384 71388609 -52687563 + URR1A DNA MER1_type 1 226 0 7 1129 409 268 165 23 chr9 71388731 71388844 -52687328 - RMER30 DNA MER1_type 0 202 69 7 1129 414 0 0 0 chr9 71388844 71388890 -52687282 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1129 409 268 165 23 chr9 71388890 71388952 -52687220 - RMER30 DNA MER1_type -134 68 3 7 1129 417 127 0 0 chr9 71389244 71389323 -52686849 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1129 700 244 86 47 chr9 71389463 71389742 -52686430 + B4A SINE B4 3 292 0 7 1129 1207 231 192 20 chr9 71390432 71390838 -52685334 + RMER5 LTR ERV1 32 507 -27 7 1129 303 28 0 0 chr9 71390838 71390874 -52685298 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1129 552 299 0 25 chr9 71390964 71391122 -52685050 + RSINE1 SINE B4 2 155 -10 7 1129 195 42 0 0 chr9 71391133 71391157 -52685015 + (CG)n Simple_repeat Simple_repeat 2 25 0 7 1129 198 0 0 0 chr9 71391157 71391178 -52684994 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1129 669 250 136 10 chr9 71391962 71392160 -52684012 + MER2 DNA MER2_type 3 225 -120 7 1129 523 258 124 12 chr9 71392160 71392321 -52683851 + B3A SINE B2 1 179 -19 7 1129 22 35 0 0 chr9 71392336 71392365 -52683807 + AT_rich Low_complexity Low_complexity 1 29 0 7 1129 327 331 39 16 chr9 71392376 71392505 -52683667 + MER2 DNA MER2_type 211 342 -3 7 1129 998 265 19 78 chr9 71393237 71393544 -52682628 + B4 SINE B4 2 290 -2 7 1129 211 329 0 23 chr9 71394021 71394108 -52682064 + G-rich Low_complexity Low_complexity 3 87 0 7 1129 689 264 12 30 chr9 71395304 71395468 -52680704 + RSINE1 SINE B4 4 164 -1 7 1129 246 62 0 0 chr9 71395473 71395505 -52680667 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 7 1129 731 239 110 48 chr9 71396136 71396409 -52679763 + B4A SINE B4 3 292 0 7 1129 384 77 0 0 chr9 71396422 71396474 -52679698 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1129 333 241 58 0 chr9 71397214 71397301 -52678871 + MLT1D LTR MaLR 407 498 -7 7 1129 239 325 0 12 chr9 71397870 71397951 -52678221 + ID4_ SINE ID 2 81 -2 7 1129 1076 166 54 29 chr9 71398496 71398701 -52677471 - URR1A DNA MER1_type -4 222 13 7 1129 1285 90 15 69 chr9 71398704 71398907 -52677265 - B2_Mm1a SINE B2 -1 192 1 7 1129 297 0 0 0 chr9 71399126 71399159 -52677013 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1129 801 281 31 68 chr9 71399565 71399859 -52676313 + B4A SINE B4 2 284 -8 7 1129 225 0 0 0 chr9 71399917 71399942 -52676230 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 7 1129 208 167 67 0 chr9 71400304 71400364 -52675808 + GA-rich Low_complexity Low_complexity 2 65 0 7 1129 701 289 37 64 chr9 71400467 71400763 -52675409 + B4 SINE B4 5 292 0 7 1129 750 64 0 0 chr9 71401073 71401182 -52674990 + (CTG)n Simple_repeat Simple_repeat 1 109 0 7 1129 194 278 74 0 chr9 71401712 71401766 -52674406 + L2b LINE L2 3313 3370 -5 7 1129 31 0 0 0 chr9 71401817 71401848 -52674324 + AT_rich Low_complexity Low_complexity 1 31 0 7 1129 899 206 10 69 chr9 71401904 71402107 -52674065 + B3A SINE B2 7 197 -1 7 1129 759 73 0 0 chr9 71402110 71402206 -52673966 + B1_Mus2 SINE Alu 47 142 -5 7 1129 333 304 146 20 chr9 71402461 71402612 -52673560 + Lx8 LINE L1 7152 7321 -152 7 1129 1057 77 21 7 chr9 71402810 71402954 -52673218 + B1_Mm SINE Alu 2 147 0 7 1129 232 174 0 0 chr9 71404053 71404094 -52672078 + ID SINE ID 1 41 -183 7 1129 1939 173 86 29 chr9 71404094 71404480 -52671692 + MTC LTR MaLR 1 408 -13 7 1129 424 212 25 0 chr9 71404561 71404641 -52671531 + ID_B1 SINE B4 130 211 -13 7 1129 229 320 94 28 chr9 71405090 71405196 -52670976 + MIR SINE MIR 25 137 -71 7 1129 855 228 153 0 chr9 71407098 71407287 -52668885 + ID_B1 SINE B4 2 219 -5 7 1129 1082 86 0 0 chr9 71407285 71407425 -52668747 + B1_Mus1 SINE Alu 9 148 0 7 1129 288 0 0 0 chr9 71407425 71407457 -52668715 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1129 189 0 0 0 chr9 71407466 71407487 -52668685 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1129 247 174 0 98 chr9 71407525 71407538 -52668634 + B3A SINE B2 4 16 -182 7 1129 2779 66 143 139 chr9 71407538 71408048 -52668124 - RLTR1B LTR ERV1 0 512 1 7 1129 247 174 0 98 chr9 71408048 71408085 -52668087 + B3A SINE B2 17 49 -149 7 1129 220 311 33 0 chr9 71408330 71408391 -52667781 - L4 LINE RTE -1949 80 18 7 1129 248 248 106 84 chr9 71408397 71408585 -52667587 + RLTR20A2 LTR ERVK 39 229 -312 7 1129 725 266 40 23 chr9 71409744 71409921 -52666251 - B3A SINE B2 -4 194 15 7 1129 350 162 14 0 chr9 71410557 71410631 -52665541 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1129 1190 281 43 7 chr9 71410672 71410952 -52665220 - B4A SINE B4 0 292 3 7 1129 618 298 0 53 chr9 71413381 71413528 -52662644 + RSINE1 SINE B4 1 140 -25 7 1129 216 0 0 0 chr9 71413528 71413552 -52662620 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1129 618 298 0 53 chr9 71413552 71413574 -52662598 + RSINE1 SINE B4 141 161 -4 7 1129 259 45 68 0 chr9 71413636 71413680 -52662492 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 7 1129 222 118 0 0 chr9 71413784 71413818 -52662354 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 7 1129 734 84 9 0 chr9 71413821 71413928 -52662244 + (TC)n Simple_repeat Simple_repeat 2 109 0 7 1129 878 189 0 0 chr9 71413934 71414082 -52662090 - B1_Mur1 SINE Alu -1 148 1 7 1129 183 139 0 0 chr9 71414365 71414401 -52661771 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 7 1129 563 281 0 0 chr9 71414880 71415015 -52661157 + B1F SINE Alu 14 148 -1 7 1129 603 234 201 29 chr9 71415270 71415543 -52660629 + Lx8 LINE L1 7152 7471 -2 7 1129 549 304 58 35 chr9 71415559 71415733 -52660439 - B3 SINE B2 -38 178 1 7 1129 195 250 118 0 chr9 71416343 71416411 -52659761 + L2c LINE L2 3125 3200 -187 7 1129 230 73 0 24 chr9 71416784 71416826 -52659346 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1129 592 259 22 7 chr9 71417266 71417402 -52658770 + RSINE1 SINE B4 2 139 -26 7 1129 594 213 23 30 chr9 71417504 71417635 -52658537 + B3A SINE B2 1 130 -68 7 1129 1179 72 14 0 chr9 71417660 71417872 -52658300 + (CA)n Simple_repeat Simple_repeat 1 215 0 7 1129 247 347 38 51 chr9 71418477 71418635 -52657537 - RLTR22_Mur LTR ERVK -389 1459 1304 7 1129 286 107 36 0 chr9 71418639 71418695 -52657477 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 1129 240 35 0 0 chr9 71418695 71418724 -52657448 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1129 464 219 4 18 chr9 71419719 71419740 -52656432 + ID SINE ID 65 81 -143 7 1129 416 237 66 2 chr9 71419740 71419880 -52656292 + PB1D10 SINE Alu 1 149 0 7 1129 853 298 144 29 chr9 71419919 71420330 -52655842 + MLT1C LTR MaLR 6 463 -4 7 1129 955 93 8 0 chr9 71420961 71421090 -52655082 - B1_Mur4 SINE Alu -6 144 15 7 1129 337 263 0 126 chr9 71420989 71421124 -52655048 - MT2B LTR ERVL -337 264 147 7 1129 770 315 18 9 chr9 71421145 71421366 -52654806 - B4 SINE B4 -12 280 58 7 1129 360 0 0 0 chr9 71422174 71422214 -52653958 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1129 460 298 30 60 chr9 71422732 71422900 -52653272 - RSINE1 SINE B4 0 165 3 7 1129 1435 266 51 6 chr9 71423696 71424051 -52652121 + MTEa LTR MaLR 1 371 -8 7 1129 311 331 130 32 chr9 71424269 71424522 -52651650 - L1MC4 LINE L1 -448 7594 7317 7 1129 228 143 0 0 chr9 71424839 71424881 -52651291 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1129 903 148 21 14 chr9 71424954 71425098 -52651074 + B1_Mur4 SINE Alu 6 150 0 7 1129 1180 147 37 0 chr9 71425194 71425385 -52650787 + B3 SINE B2 19 216 0 7 1129 464 265 132 145 chr9 71425685 71425880 -52650292 + B4A SINE B4 1 225 -67 7 1129 675 201 89 7 chr9 71425880 71426015 -52650157 + B1_Mur2 SINE Alu 2 147 -2 7 1129 746 230 115 26 chr9 71426020 71426212 -52649960 + B3 SINE B2 3 211 -5 7 1129 464 265 132 145 chr9 71426212 71426229 -52649943 + B4A SINE B4 226 226 -66 7 1129 207 0 0 0 chr9 71426229 71426252 -52649920 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 7 1129 464 265 132 145 chr9 71426252 71426328 -52649844 + B4A SINE B4 226 292 0 7 1129 222 205 0 0 chr9 71426331 71426370 -52649802 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1129 241 342 59 47 chr9 71426612 71426781 -52649391 + L2b LINE L2 3199 3369 -6 7 1129 641 250 6 36 chr9 71427985 71428151 -52648021 - RSINE1 SINE B4 -2 163 3 7 1129 383 266 96 8 chr9 71428196 71428321 -52647851 + L1MB3 LINE L1 5725 5860 -323 7 1129 810 301 77 0 chr9 71428321 71428633 -52647539 + L1MB3 LINE L1 5804 6139 -44 7 1129 1002 111 27 14 chr9 71428893 71429039 -52647133 + B1_Mur2 SINE Alu 2 149 0 7 1129 280 154 15 30 chr9 71429048 71429115 -52647057 + (CATA)n Simple_repeat Simple_repeat 2 67 0 7 1129 243 297 13 13 chr9 71429152 71429227 -52646945 + ID4_ SINE ID 5 79 -4 7 1129 327 224 14 29 chr9 71429352 71429421 -52646751 - ID_B1 SINE B4 -125 99 32 7 1129 371 291 26 0 chr9 71429433 71429550 -52646622 + MLT1B LTR MaLR 87 206 -184 7 1129 328 304 29 7 chr9 71429565 71429701 -52646471 + B1F SINE Alu 4 142 -7 7 1129 846 197 7 0 chr9 71429708 71429855 -52646317 + B1_Mur2 SINE Alu 2 149 0 7 1129 342 0 0 0 chr9 71430539 71430577 -52645595 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1129 227 278 26 0 chr9 71430599 71430665 -52645507 - B4 SINE B4 -16 276 239 7 1129 326 260 0 13 chr9 71430915 71430993 -52645179 - B4 SINE B4 -214 78 2 7 1129 993 124 7 0 chr9 71431672 71431817 -52644355 + B1_Mur4 SINE Alu 5 150 0 8 1129 330 206 0 0 chr9 71431817 71431890 -52644282 + A-rich Low_complexity Low_complexity 1 73 0 8 1129 346 311 21 36 chr9 71432087 71432227 -52643945 + B4A SINE B4 1 138 -154 8 1129 275 0 29 0 chr9 71432320 71432355 -52643817 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1129 342 45 0 0 chr9 71432536 71432580 -52643592 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1129 417 302 159 4 chr9 71433217 71433443 -52642729 + MIR SINE MIR 2 262 0 8 1130 249 264 20 0 chr9 71434598 71434668 -52641504 - MER58D DNA MER1_type -2 384 312 8 1130 197 205 26 0 chr9 71435179 71435218 -52640954 - MER5B DNA MER1_type -138 40 1 8 1130 180 111 0 0 chr9 71435602 71435629 -52640543 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1130 267 114 0 0 chr9 71435629 71435673 -52640499 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 8 1130 252 0 0 0 chr9 71436527 71436555 -52639617 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1130 29 0 0 0 chr9 71437551 71437580 -52638592 + AT_rich Low_complexity Low_complexity 1 29 0 8 1130 713 290 57 0 chr9 71437853 71438029 -52638143 + RMER30 DNA MER1_type 14 199 -3 8 1130 369 0 0 0 chr9 71438540 71438581 -52637591 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1130 209 171 0 0 chr9 71439048 71439083 -52637089 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1130 216 0 0 0 chr9 71439083 71439107 -52637065 + (CCA)n Simple_repeat Simple_repeat 3 26 0 8 1130 192 333 101 54 chr9 71440479 71440647 -52635525 - L2b LINE L2 -90 3285 3110 8 1130 408 307 67 46 chr9 71440661 71440900 -52635272 - MIR SINE MIR -11 251 8 8 1130 275 0 29 0 chr9 71441212 71441247 -52634925 + (TC)n Simple_repeat Simple_repeat 2 37 0 8 1130 348 24 0 0 chr9 71441247 71441287 -52634885 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1130 650 236 106 11 chr9 71441511 71441691 -52634481 - B3A SINE B2 0 198 2 8 1130 924 190 106 20 chr9 71441987 71442186 -52633986 + B3 SINE B2 1 216 0 8 1130 1999 200 67 15 chr9 71442500 71442891 -52633281 + MTD LTR MaLR 1 411 -8 8 1130 553 243 140 0 chr9 71443519 71443655 -52632517 + B3A SINE B2 1 155 -43 8 1130 288 0 0 0 chr9 71443659 71443691 -52632481 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1130 297 0 0 0 chr9 71443691 71443724 -52632448 + (TA)n Simple_repeat Simple_repeat 2 34 0 8 1130 668 283 29 71 chr9 71444757 71445064 -52631108 + ORR1E LTR MaLR 7 301 -69 8 1130 276 338 54 14 chr9 71445250 71445397 -52630775 - MIR SINE MIR -83 179 27 8 1130 355 232 36 12 chr9 71446468 71446551 -52629621 + ID SINE ID 2 86 -138 8 1130 4139 107 22 60 chr9 71447960 71448728 -52627444 + MT-int LTR MaLR 1 1403 -560 8 1130 510 259 0 35 chr9 71448659 71448775 -52627397 + ID_B1 SINE B4 79 190 -34 8 1130 487 250 0 72 chr9 71448663 71448788 -52627384 + PB1D10 SINE Alu 2 117 0 8 1130 600 238 16 8 chr9 71450189 71450316 -52625856 - RSINE1 SINE B4 -35 130 3 8 1130 348 266 125 111 chr9 71450351 71450639 -52625533 - B4A SINE B4 0 292 1 8 1130 533 216 45 0 chr9 71450698 71450809 -52625363 - PB1D10 SINE Alu -1 116 1 8 1130 236 319 69 98 chr9 71451104 71451120 -52625052 + B4A SINE B4 78 129 -163 8 1130 722 191 40 0 chr9 71451120 71451246 -52624926 + B1_Mus1 SINE Alu 10 140 -8 8 1130 236 319 69 98 chr9 71451246 71451278 -52624894 + B4A SINE B4 130 246 -46 8 1130 348 334 170 8 chr9 71451819 71452184 -52623988 + L2 LINE L2 2467 2890 -529 8 1130 506 236 85 43 chr9 71452515 71452552 -52623620 + ID_B1 SINE B4 54 224 0 8 1130 628 197 47 0 chr9 71452552 71452679 -52623493 + B1F2 SINE Alu 17 149 0 8 1130 281 374 9 36 chr9 71453415 71453526 -52622646 - LTR16A LTR ERVL -229 222 115 8 1130 1225 88 3 11 chr9 71453754 71453953 -52622219 + B2_Mm2 SINE B2 2 193 0 8 1130 324 292 33 11 chr9 71454044 71454134 -52622038 + MIRb SINE MIR 105 196 -72 8 1130 374 306 69 25 chr9 71455863 71456067 -52620105 + L1M4 LINE L1 5505 5717 -467 8 1130 798 286 62 37 chr9 71456075 71456102 -52620070 + B4 SINE B4 43 66 -226 8 1130 369 0 0 0 chr9 71456102 71456143 -52620029 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1130 798 286 62 37 chr9 71456143 71456358 -52619814 + B4 SINE B4 67 290 -2 8 1130 242 387 27 0 chr9 71456655 71456766 -52619406 - MIR SINE MIR -102 160 47 8 1130 295 189 0 0 chr9 71457867 71457920 -52618252 - MER33 DNA MER1_type -10 314 262 8 1130 473 208 109 0 chr9 71458065 71458166 -52618006 + B1_Mus1 SINE Alu 37 148 0 8 1130 22 0 0 0 chr9 71458166 71458188 -52617984 + AT_rich Low_complexity Low_complexity 1 22 0 8 1130 644 293 24 10 chr9 71458207 71458414 -52617758 + B3 SINE B2 1 210 -6 8 1130 535 207 301 20 chr9 71458428 71458581 -52617591 - B3A SINE B2 0 198 3 8 1130 364 246 0 0 chr9 71458581 71458650 -52617522 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 8 1130 539 281 57 66 chr9 71458677 71458921 -52617251 - MER33 DNA MER1_type -77 247 6 8 1130 1682 176 121 9 chr9 71459302 71459640 -52616532 - RLTR14 LTR ERV1 0 382 7 8 1130 452 230 60 134 chr9 71460885 71461039 -52615133 + B3 SINE B2 2 153 -63 8 1130 399 89 0 0 chr9 71461039 71461095 -52615077 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1130 452 230 60 134 chr9 71461095 71461156 -52615016 + B3 SINE B2 154 201 -15 8 1130 945 276 103 23 chr9 71461322 71461671 -52614501 - MTEb LTR MaLR 0 379 3 8 1130 386 318 23 16 chr9 71462182 71462310 -52613862 + B1F2 SINE Alu 9 137 -12 8 1130 263 131 64 21 chr9 71462426 71462473 -52613699 + B3A SINE B2 18 66 -132 8 1130 644 37 2 0 chr9 71462513 71462600 -52613572 - B1_Mus2 SINE Alu -9 141 54 8 1130 518 289 33 0 chr9 71462590 71462742 -52613430 + B3 SINE B2 57 213 -3 8 1130 410 293 0 33 chr9 71462764 71462884 -52613288 + CT-rich Low_complexity Low_complexity 2 117 0 8 1130 556 252 9 0 chr9 71462895 71463002 -52613170 - PB1D10 SINE Alu -8 109 2 8 1130 222 238 76 45 chr9 71464244 71464310 -52611862 + MER5A DNA MER1_type 111 178 -11 8 1130 546 267 8 0 chr9 71464321 71464452 -52611720 + RSINE1 SINE B4 28 159 -6 8 1130 411 21 0 0 chr9 71464454 71464502 -52611670 + (CAAT)n Simple_repeat Simple_repeat 1 48 0 8 1130 353 251 72 28 chr9 71464633 71464793 -52611379 + B4A SINE B4 1 161 -4 8 1130 1569 142 146 4 chr9 71465764 71466039 -52610133 + MTC LTR MaLR 1 314 -107 8 1130 253 300 74 37 chr9 71466489 71466624 -52609548 + YREP_Mm Unknown Unknown 155 294 -1518 8 1130 689 202 16 0 chr9 71466513 71466637 -52609535 - ID_B1 SINE B4 -8 216 91 8 1130 1072 100 0 7 chr9 71466684 71466825 -52609347 - B1_Mus1 SINE Alu -8 140 1 8 1130 317 306 35 79 chr9 71467252 71467284 -52608888 - B2_Mm2 SINE B2 -2 193 121 8 1130 574 289 29 65 chr9 71467284 71467329 -52608843 - RSINE1 SINE B4 0 165 127 8 1130 306 0 0 0 chr9 71467329 71467363 -52608809 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1130 317 306 35 79 chr9 71467363 71467487 -52608685 - B2_Mm2 SINE B2 -75 120 1 8 1130 1433 282 67 90 chr9 71467487 71467714 -52608458 - L1M2 LINE L1 -2962 3883 3615 8 1130 1555 38 21 5 chr9 71467714 71467901 -52608271 + B2_Mm1t SINE B2 2 191 -2 8 1130 2771 82 38 10 chr9 71467901 71468293 -52607879 - RLTR9D LTR ERVK 0 403 1 8 1130 1433 282 67 90 chr9 71468293 71468517 -52607655 - L1M2 LINE L1 -3231 3614 3421 8 1130 855 229 11 11 chr9 71468517 71468698 -52607474 + B3A SINE B2 1 181 -17 8 1130 1433 283 76 75 chr9 71468698 71469574 -52606598 - L1M2 LINE L1 -3425 3420 2559 8 1130 181 217 197 28 chr9 71470628 71470699 -52605473 + MIRm SINE MIR 82 164 -112 8 1130 715 236 18 82 chr9 71470760 71470844 -52605328 + ID SINE ID 11 83 -141 8 1130 548 232 27 0 chr9 71470844 71470956 -52605216 + PB1D10 SINE Alu 3 117 0 8 1130 248 53 0 26 chr9 71472318 71472357 -52603815 + (TTG)n Simple_repeat Simple_repeat 2 39 0 8 1130 564 90 101 0 chr9 71472357 71472446 -52603726 - B1_Mus2 SINE Alu -24 123 26 8 1130 1213 117 26 26 chr9 71472443 71472636 -52603536 - B2_Mm2 SINE B2 -2 193 1 8 1130 230 116 45 23 chr9 71472636 71472670 -52603502 - PB1D7 SINE Alu -80 40 6 8 1130 23 0 0 0 chr9 71473509 71473532 -52602640 + GC_rich Low_complexity Low_complexity 1 23 0 8 1130 603 261 74 6 chr9 71474095 71474257 -52601915 - B4A SINE B4 -86 206 34 8 1130 203 296 41 115 chr9 71475289 71475315 -52600857 + L2b LINE L2 3314 3341 -85 8 1130 909 236 28 14 chr9 71475315 71475530 -52600642 - ID_B1 SINE B4 -5 219 2 8 1130 242 293 19 56 chr9 71475530 71475625 -52600547 + L2b LINE L2 3303 3426 0 8 1130 905 214 40 75 chr9 71477495 71477722 -52598450 - ID_B1 SINE B4 0 224 6 8 1130 441 0 0 0 chr9 71479156 71479205 -52596967 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1130 712 242 145 3 chr9 71481030 71481341 -52594831 + L1M2 LINE L1 2238 2592 -4257 8 1130 407 268 38 69 chr9 71481433 71481697 -52594475 + L1M2 LINE L1 2741 2996 -3849 8 1130 249 278 96 96 chr9 71481725 71481912 -52594260 + Lx8 LINE L1 7271 7457 -16 8 1130 286 330 20 20 chr9 71481914 71481956 -52594216 + B4A SINE B4 46 87 -205 8 1130 353 196 0 7 chr9 71481956 71482033 -52594139 + B1_Mus2 SINE Alu 3 77 -43 8 1130 610 296 118 56 chr9 71482059 71482507 -52593665 + Lx7 LINE L1 6985 7472 -1 8 1130 262 317 8 0 chr9 71482575 71482695 -52593477 + L1MA5 LINE L1 6160 6280 -20 8 1130 652 285 44 12 chr9 71485204 71485364 -52590808 - ID_B1 SINE B4 -58 166 2 8 1130 212 231 0 0 chr9 71485572 71485611 -52590561 - ID4_ SINE ID -2 81 43 8 1130 233 179 0 0 chr9 71485622 71485661 -52590511 - PB1D10 SINE Alu -42 75 37 8 1130 539 189 28 0 chr9 71487398 71487504 -52588668 + PB1D10 SINE Alu 3 111 -6 8 1130 726 12 0 0 chr9 71487506 71487589 -52588583 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 9 1130 979 203 87 19 chr9 71487826 71488032 -52588140 - ID_B1 SINE B4 0 224 5 9 1130 881 216 78 5 chr9 71489410 71489601 -52586571 - ID_B1 SINE B4 -17 207 3 9 1130 883 178 165 11 chr9 71490201 71490383 -52585789 - B3 SINE B2 -5 211 2 9 1130 422 341 39 0 chr9 71490556 71490685 -52585487 + RSINE1 SINE B4 3 136 -29 9 1130 518 141 261 51 chr9 71490702 71490859 -52585313 + B2_Mm2 SINE B2 2 191 -4 9 1130 1363 65 38 5 chr9 71491325 71491511 -52584661 - B2_Mm1t SINE B2 -1 192 1 9 1130 735 230 41 35 chr9 71491518 71491719 -52584453 - B3A SINE B2 0 198 15 9 1130 198 0 0 0 chr9 71491844 71491866 -52584306 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1130 225 94 0 0 chr9 71491866 71491897 -52584275 + (CG)n Simple_repeat Simple_repeat 2 33 0 9 1130 641 259 45 66 chr9 71491899 71492097 -52584075 - B4A SINE B4 -97 195 2 9 1130 288 246 32 32 chr9 71493554 71493617 -52582555 - B3 SINE B2 -30 186 124 9 1130 189 204 70 53 chr9 71493642 71493699 -52582473 + MIR SINE MIR 94 151 -57 9 1130 182 256 76 0 chr9 71494587 71494658 -52581514 + MIRc SINE MIR 110 190 -72 9 1130 198 0 0 0 chr9 71494764 71494786 -52581386 + (CCA)n Simple_repeat Simple_repeat 1 22 0 9 1130 291 114 0 0 chr9 71494787 71494831 -52581341 + (TCC)n Simple_repeat Simple_repeat 3 46 0 9 1130 819 204 119 36 chr9 71494973 71495166 -52581006 + B3 SINE B2 2 210 -6 9 1130 467 302 178 7 chr9 71495397 71495690 -52580482 + Lx8 LINE L1 6930 7272 -201 9 1130 282 232 0 0 chr9 71496798 71496854 -52579318 + PB1D10 SINE Alu 1 56 -61 9 1130 338 0 24 0 chr9 71496864 71496906 -52579266 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 9 1130 385 282 38 19 chr9 71497040 71497199 -52578973 + RSINE1 SINE B4 3 164 -1 9 1130 654 250 28 17 chr9 71497379 71497558 -52578614 + B3A SINE B2 2 182 -16 9 1130 251 71 24 0 chr9 71499549 71499591 -52576581 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 9 1130 980 122 14 21 chr9 71499591 71499734 -52576438 - B1_Mur4 SINE Alu -7 143 2 9 1130 1355 151 144 8 chr9 71500103 71500427 -52575745 + ORR1A4 LTR MaLR 1 359 -15 1 1130 551 196 25 75 chr9 71500649 71500671 -52575501 + ID_B1 SINE B4 66 220 -68 2 1130 837 154 7 20 chr9 71500671 71500817 -52575355 + B1_Mur4 SINE Alu 6 149 -1 3 1130 396 0 0 0 chr9 71500821 71500865 -52575307 + (CACAA)n Simple_repeat Simple_repeat 4 47 0 4 1130 514 272 27 90 chr9 71500865 71500914 -52575258 + B4A SINE B4 225 274 -18 2 1130 323 182 13 0 chr9 71501003 71501080 -52575092 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1130 342 0 0 0 chr9 71501206 71501244 -52574928 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1130 25 0 0 0 chr9 71501465 71501490 -52574682 + AT_rich Low_complexity Low_complexity 1 25 0 7 1130 1096 118 25 0 chr9 71501509 71501670 -52574502 + B2_Mm2 SINE B2 2 166 -29 8 1130 513 290 7 46 chr9 71502096 71502248 -52573924 + B4A SINE B4 1 146 -146 9 1130 367 206 45 45 chr9 71502813 71502925 -52573247 - MER20 DNA MER1_type -1 218 107 1 1130 478 260 49 0 chr9 71504137 71504260 -52571912 + B1F SINE Alu 13 141 -8 1 1130 268 230 54 0 chr9 71504336 71504410 -52571762 + CT-rich Low_complexity Low_complexity 1 78 0 1 1130 832 143 29 22 chr9 71504411 71504547 -52571625 - B1_Mur4 SINE Alu -13 137 1 1 1130 699 250 120 20 chr9 71504760 71504960 -52571212 + ID_B1 SINE B4 1 220 -4 1 1130 279 331 28 7 chr9 71504982 71505125 -52571047 + L1MB7 LINE L1 4991 5136 -1010 1 1130 566 207 34 8 chr9 71505126 71505243 -52570929 - B3 SINE B2 -11 205 86 1 1130 498 312 85 45 chr9 71505313 71505427 -52570745 + L1MB7 LINE L1 5199 5303 -843 1 1130 705 197 8 45 chr9 71505427 71505560 -52570612 - B1_Mur2 SINE Alu -19 130 3 1 1130 750 291 115 29 chr9 71505560 71506073 -52570099 + L1MB7 LINE L1 5304 5891 -293 1 1130 581 199 342 0 chr9 71506409 71506570 -52569602 - B3 SINE B2 0 216 1 1 1130 737 173 113 0 chr9 71507882 71508015 -52568157 + B1_Mur1 SINE Alu 2 149 0 1 1130 294 29 0 0 chr9 71508402 71508437 -52567735 + (TCC)n Simple_repeat Simple_repeat 1 35 0 2 1130 282 244 0 0 chr9 71508888 71508970 -52567202 + CT-rich Low_complexity Low_complexity 4 85 0 2 1130 578 281 109 25 chr9 71508983 71509184 -52566988 - B4 SINE B4 -72 220 3 2 1130 324 0 0 0 chr9 71509618 71509654 -52566518 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 2 1130 707 265 13 19 chr9 71509661 71509815 -52566357 - RSINE1 SINE B4 -1 164 12 2 1130 836 69 9 0 chr9 71509835 71509951 -52566221 + (GGGAGA)n Simple_repeat Simple_repeat 4 120 0 2 1130 5066 71 6 1 chr9 71510155 71510802 -52565370 + L1_Mus2 LINE L1 5917 6566 0 2 1130 575 287 27 66 chr9 71510806 71510872 -52565300 - B3A SINE B2 -22 176 111 2 1130 622 184 418 0 chr9 71510872 71511030 -52565142 + URR1A DNA MER1_type 1 224 -2 2 1130 575 287 27 66 chr9 71511030 71511146 -52565026 - B3A SINE B2 -88 110 1 2 1130 775 124 154 8 chr9 71512214 71512344 -52563828 + B1_Mur4 SINE Alu 2 150 0 2 1130 245 233 82 0 chr9 71512437 71512510 -52563662 - MER5A1 DNA MER1_type -52 114 36 3 1130 398 234 126 40 chr9 71513249 71513400 -52562772 + RSINE1 SINE B4 2 165 0 3 1130 528 16 0 0 chr9 71513599 71513660 -52562512 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1130 772 209 48 0 chr9 71513797 71513960 -52562212 + B3 SINE B2 1 177 -21 3 1130 311 255 115 21 chr9 71514128 71514224 -52561948 + L1MB7 LINE L1 5908 6012 -172 3 1130 848 204 12 12 chr9 71514829 71514908 -52561264 + ID SINE ID 2 80 -144 3 1130 416 315 9 9 chr9 71514908 71515017 -52561155 + PB1D10 SINE Alu 1 109 -8 3 1130 183 42 0 0 chr9 71515019 71515043 -52561129 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1130 248 200 0 0 chr9 71516019 71516064 -52560108 + MLT1I LTR MaLR 73 117 -294 3 1130 315 265 0 14 chr9 71516118 71516187 -52559985 + B4 SINE B4 17 84 -208 3 1130 764 228 62 47 chr9 71516200 71516393 -52559779 + B3A SINE B2 1 196 -2 4 1130 1482 69 0 5 chr9 71516580 71516770 -52559402 + B2_Mm2 SINE B2 4 192 -3 4 1130 435 242 1 7 chr9 71516795 71516893 -52559279 + B4A SINE B4 84 176 -116 3 1130 503 241 114 25 chr9 71516903 71517053 -52559119 + B4 SINE B4 136 292 0 4 1130 311 244 11 32 chr9 71517057 71517150 -52559022 + (CATA)n Simple_repeat Simple_repeat 1 91 0 4 1130 305 174 14 0 chr9 71517210 71517279 -52558893 + (CATA)n Simple_repeat Simple_repeat 1 70 0 4 1130 296 269 90 97 chr9 71517361 71517505 -52558667 + MLT1I LTR MaLR 256 398 -13 3 1130 440 228 45 66 chr9 71518014 71518160 -52558012 + B1F1 SINE Alu 14 149 0 4 1130 414 302 23 23 chr9 71518943 71519075 -52557097 + Tigger16a DNA Tigger 760 891 -42 4 1130 1312 188 5 5 chr9 71519640 71519854 -52556318 - ID_B1 SINE B4 -2 222 9 4 1130 198 0 0 0 chr9 71519937 71519959 -52556213 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1130 964 180 35 45 chr9 71520387 71520585 -52555587 + B3 SINE B2 15 210 -6 4 1130 751 164 57 0 chr9 71520605 71520745 -52555427 + B1_Mus1 SINE Alu 1 148 0 4 1130 810 31 0 0 chr9 71520751 71520848 -52555324 + (GGA)n Simple_repeat Simple_repeat 2 98 0 5 1130 189 277 136 19 chr9 71521005 71521108 -52555064 + L2b LINE L2 2632 2746 -673 5 1130 811 254 120 41 chr9 71521257 71521499 -52554673 + ORR1D2 LTR MaLR 108 368 -2 5 1130 453 259 0 0 chr9 71521514 71521688 -52554484 + (TG)n Simple_repeat Simple_repeat 1 174 0 5 1130 416 310 54 14 chr9 71521720 71521867 -52554305 - RSINE1 SINE B4 -9 156 4 5 1130 249 303 84 78 chr9 71522131 71522310 -52553862 + L2b LINE L2 3099 3278 -97 5 1130 186 43 0 0 chr9 71522367 71522390 -52553782 + (CAAG)n Simple_repeat Simple_repeat 1 23 0 5 1130 1373 264 25 66 chr9 71522680 71523074 -52553098 + MTEa LTR MaLR 1 378 -1 5 1130 509 204 435 0 chr9 71523283 71523430 -52552742 + ID_B1 SINE B4 1 211 -13 5 1130 645 25 0 0 chr9 71523876 71523955 -52552217 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1130 823 199 296 9 chr9 71524455 71524516 -52551656 - B4 SINE B4 -4 288 215 5 1130 1060 101 18 0 chr9 71524516 71524684 -52551488 + (GGAA)n Simple_repeat Simple_repeat 2 172 0 6 1130 823 199 296 9 chr9 71524684 71524845 -52551327 - B4 SINE B4 -78 214 2 5 1130 333 45 0 22 chr9 71525608 71525653 -52550519 - MTC LTR MaLR 0 419 376 6 1130 1286 20 0 7 chr9 71525653 71525801 -52550371 + B1_Mus2 SINE Alu 1 147 0 6 1130 234 164 79 32 chr9 71525801 71525818 -52550354 - MTC LTR MaLR -43 351 330 6 1130 1818 158 3 53 chr9 71525823 71526164 -52550008 - MTC LTR MaLR -31 390 67 6 1130 651 165 19 0 chr9 71526144 71526247 -52549925 - PB1D9 SINE Alu -7 113 9 6 1130 669 135 0 19 chr9 71526252 71526358 -52549814 - MTC LTR MaLR -317 104 1 6 1130 333 312 0 0 chr9 71526494 71526574 -52549598 - ID4 SINE ID -2 81 2 6 1130 269 36 73 0 chr9 71528114 71528169 -52548003 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 1130 733 235 13 57 chr9 71528634 71528792 -52547380 + RSINE1 SINE B4 11 161 -4 6 1130 368 297 209 8 chr9 71528865 71529099 -52547073 - L3 LINE CR1 -744 3745 3465 6 1130 915 241 52 4 chr9 71529302 71529521 -52546651 + B4A SINE B4 2 231 -61 6 1130 299 232 325 19 chr9 71529521 71529675 -52546497 + B3 SINE B2 1 201 -15 6 1130 246 289 0 55 chr9 71530194 71530377 -52545795 + (CATG)n Simple_repeat Simple_repeat 3 175 0 7 1130 278 269 0 57 chr9 71530398 71530575 -52545597 + (CATG)n Simple_repeat Simple_repeat 1 167 0 7 1130 1180 164 25 68 chr9 71531542 71531777 -52544395 + URR1B DNA MER1_type 1 225 0 7 1130 857 138 14 7 chr9 71532302 71532448 -52543724 - B1_Mur1 SINE Alu 0 149 3 7 1130 387 240 41 136 chr9 71532448 71532474 -52543698 - B4 SINE B4 -212 80 71 7 1130 558 0 0 0 chr9 71532889 71532951 -52543221 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1130 261 0 0 0 chr9 71533216 71533245 -52542927 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1130 1911 50 259 0 chr9 71533776 71534073 -52542099 - MURVY-LTR LTR ERV1 -145 374 1 7 1130 1420 222 85 106 chr9 71534079 71534673 -52541499 - L1MA4A LINE L1 -372 5931 5283 7 1130 383 241 131 6 chr9 71534747 71534922 -52541250 + L1MD LINE L1 3001 3197 -2949 7 1130 810 231 27 16 chr9 71534951 71535136 -52541036 + B3A SINE B2 2 188 -10 7 1130 700 269 28 37 chr9 71535141 71535357 -52540815 + B3 SINE B2 2 215 -1 8 1130 32 43 0 0 chr9 71535358 71535404 -52540768 + AT_rich Low_complexity Low_complexity 1 46 0 8 1130 356 339 71 42 chr9 71535432 71535672 -52540500 + L1MD LINE L1 4484 4730 -1416 7 1130 519 259 140 41 chr9 71535709 71535905 -52540267 + L1MD LINE L1 4805 5007 -1139 7 1130 636 182 212 36 chr9 71535905 71536070 -52540102 - B3A SINE B2 -4 194 1 8 1130 519 259 140 41 chr9 71536070 71536267 -52539905 + L1MD LINE L1 5008 5236 -910 7 1130 292 274 82 0 chr9 71536918 71536991 -52539181 + B4A SINE B4 212 290 -2 8 1130 643 289 47 0 chr9 71537026 71537175 -52538997 + ID_B1 SINE B4 38 193 -31 8 1130 219 186 0 0 chr9 71537186 71537229 -52538943 + GA-rich Low_complexity Low_complexity 2 44 0 8 1130 2178 246 106 19 chr9 71539000 71539688 -52536484 + Lx8 LINE L1 6719 7466 -7 8 1130 473 309 7 21 chr9 71540341 71540483 -52535689 + B4A SINE B4 33 172 -120 8 1130 210 128 0 0 chr9 71540569 71540608 -52535564 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1130 644 279 191 79 chr9 71540672 71540820 -52535352 - MLT1F LTR MaLR 0 548 378 8 1130 543 203 105 0 chr9 71540820 71540953 -52535219 + B1F SINE Alu 1 147 -2 9 1130 418 169 0 0 chr9 71540959 71541024 -52535148 + ID4_ SINE ID 1 65 -18 9 1130 644 279 191 79 chr9 71541024 71541359 -52534813 - MLT1F LTR MaLR -175 373 3 8 1130 342 61 0 0 chr9 71541564 71541613 -52534559 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 9 1130 335 256 107 46 chr9 71541912 71542043 -52534129 + ID_B1 SINE B4 8 146 -78 9 1130 238 175 0 34 chr9 71542401 71542460 -52533712 + (TCTCTG)n Simple_repeat Simple_repeat 5 61 0 9 1130 335 320 6 37 chr9 71542447 71542609 -52533563 + CT-rich Low_complexity Low_complexity 1 157 0 9 1130 194 324 92 36 chr9 71542669 71542859 -52533313 + L2b LINE L2 2905 3099 -327 9 1130 1525 192 85 64 chr9 71542859 71543249 -52532923 + RMER10B LTR ERVL 1 398 0 9 1130 180 344 54 63 chr9 71543249 71543273 -52532899 + L2b LINE L2 3100 3122 -304 9 1130 185 356 44 44 chr9 71543368 71543459 -52532713 + L2b LINE L2 3281 3371 -4 9 1130 1028 238 14 14 chr9 71544079 71544296 -52531876 - ID_B1 SINE B4 -3 221 5 9 1130 819 294 45 19 chr9 71544803 71545070 -52531102 + B4A SINE B4 1 274 -18 9 1130 293 82 20 0 chr9 71545096 71545145 -52531027 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1130 583 137 95 0 chr9 71545468 71545563 -52530609 - PB1D9 SINE Alu 0 120 17 1 1130 1500 117 14 0 chr9 71545638 71545860 -52530312 - URR1B DNA MER1_type 0 225 1 1 1130 626 212 68 0 chr9 71546162 71546294 -52529878 + MTD LTR MaLR 278 418 -1 1 1130 554 307 65 81 chr9 71546315 71546637 -52529535 + ORR1E LTR MaLR 1 317 -42 1 1130 360 0 0 0 chr9 71546669 71546709 -52529463 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1130 288 0 0 0 chr9 71546709 71546740 -52529432 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1130 189 0 0 0 chr9 71546741 71546762 -52529410 + (CAG)n Simple_repeat Simple_repeat 2 22 0 1 1130 1000 221 58 5 chr9 71547344 71547549 -52528623 + B3 SINE B2 1 216 0 1 1130 28 0 0 0 chr9 71547584 71547612 -52528560 + AT_rich Low_complexity Low_complexity 1 28 0 1 1130 1346 7 0 0 chr9 71547896 71548043 -52528129 + B1_Mm SINE Alu 1 147 0 1 1130 1061 257 30 4 chr9 71548323 71548589 -52527583 - B4 SINE B4 -19 273 1 1 1130 225 229 148 0 chr9 71548611 71548672 -52527500 - RLTR25A LTR ERVK -87 1016 947 1 1130 1046 330 79 21 chr9 71550031 71550664 -52525508 + Lx8 LINE L1 6740 7527 -117 1 1130 775 291 30 5 chr9 71551329 71551529 -52524643 - B3 SINE B2 -5 211 7 1 1130 935 159 159 0 chr9 71553389 71553571 -52522601 - B3 SINE B2 -5 211 1 1 1130 865 244 38 0 chr9 71553636 71553849 -52522323 - ID_B1 SINE B4 -1 223 3 1 1130 397 251 60 194 chr9 71554479 71554696 -52521476 - MTE2a LTR MaLR -191 188 1 1 1130 204 179 0 0 chr9 71554928 71554967 -52521205 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1130 278 0 54 0 chr9 71555454 71555491 -52520681 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1130 1168 65 0 0 chr9 71555491 71555629 -52520543 - B1_Mm SINE Alu -9 138 1 1 1130 941 191 109 15 chr9 71555689 71555891 -52520281 - ID_B1 SINE B4 -1 223 3 1 1130 309 158 19 62 chr9 71556303 71556465 -52519707 + (TATG)n Simple_repeat Simple_repeat 4 158 0 1 1130 395 273 53 99 chr9 71556479 71556650 -52519522 - RSINE1 SINE B4 0 165 3 1 1130 406 247 178 40 chr9 71556689 71556733 -52519439 + CYRA11_Mm Unknown Y-chromosome 116 187 -430 1 1130 861 135 116 6 chr9 71556733 71556897 -52519275 - URR1A DNA MER1_type 0 226 45 1 1130 561 272 25 31 chr9 71557660 71557823 -52518349 + RSINE1 SINE B4 2 163 -2 1 1130 32 26 0 0 chr9 71557935 71557974 -52518198 + AT_rich Low_complexity Low_complexity 1 39 0 1 1130 475 181 7 32 chr9 71558116 71558131 -52518041 + polypurine Low_complexity Low_complexity 2 16 0 1 1130 1133 69 14 14 chr9 71558131 71558278 -52517894 + B1_Mm SINE Alu 1 147 0 1 1130 475 181 7 32 chr9 71558278 71558416 -52517756 + GA-rich Low_complexity Low_complexity 17 151 0 1 1130 390 121 0 0 chr9 71558571 71558637 -52517535 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1130 203 293 0 29 chr9 71558646 71558748 -52517424 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 1 1130 209 186 0 0 chr9 71558676 71558719 -52517453 + (CTCG)n Simple_repeat Simple_repeat 2 44 0 1 1130 1203 133 50 36 chr9 71559306 71559525 -52516647 + URR1A DNA MER1_type 5 226 0 1 1130 712 269 0 0 chr9 71559908 71560042 -52516130 + RSINE1 SINE B4 3 136 -29 1 1130 399 41 0 0 chr9 71560054 71560103 -52516069 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1130 222 341 11 45 chr9 71560152 71560241 -52515931 + B4 SINE B4 1 86 -206 1 1130 469 306 0 82 chr9 71560260 71560406 -52515766 + ID_B1 SINE B4 78 211 -13 1 1130 516 32 0 0 chr9 71560407 71560469 -52515703 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 1 1130 243 0 0 0 chr9 71560529 71560556 -52515616 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1130 181 53 51 26 chr9 71560643 71560682 -52515490 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1130 594 253 7 58 chr9 71560682 71560837 -52515335 - B1_Mur2 SINE Alu -2 147 1 1 1130 895 218 59 5 chr9 71561587 71561790 -52514382 + ID_B1 SINE B4 2 215 -9 1 1130 244 204 0 0 chr9 71562151 71562200 -52513972 - ID_B1 SINE B4 -9 215 167 1 1130 372 328 0 16 chr9 71562460 71562643 -52513529 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1130 758 244 103 33 chr9 71562668 71562939 -52513233 - B4 SINE B4 0 292 3 1 1130 342 244 42 95 chr9 71563573 71563668 -52512504 + MTEa LTR MaLR 5 94 -285 1 1130 306 0 0 0 chr9 71564439 71564473 -52511699 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 1 1130 826 267 5 0 chr9 71564473 71564679 -52511493 - ID_B1 SINE B4 -14 210 4 1 1130 206 118 0 38 chr9 71565101 71565154 -52511018 + A-rich Low_complexity Low_complexity 2 52 0 1 1131 536 257 169 0 chr9 71565625 71565685 -52510487 - B4 SINE B4 -8 284 212 1 1131 252 0 0 0 chr9 71565685 71565713 -52510459 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1131 536 257 169 0 chr9 71565713 71565800 -52510372 - B4 SINE B4 -81 211 113 1 1131 241 246 152 15 chr9 71565813 71565879 -52510293 + B4A SINE B4 216 290 -2 1 1131 267 79 0 0 chr9 71565888 71565926 -52510246 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1131 271 293 40 20 chr9 71565939 71566040 -52510132 + L1MC1 LINE L1 6096 6198 -135 1 1131 357 244 0 13 chr9 71566119 71566198 -52509974 + ID4_ SINE ID 3 80 -3 1 1131 464 327 206 71 chr9 71566453 71567017 -52509155 + L1MEg LINE L1 220 859 -5225 1 1131 477 304 48 26 chr9 71567028 71567217 -52508955 + B4A SINE B4 1 193 -99 1 1131 747 252 12 18 chr9 71568005 71568171 -52508001 + ID_B1 SINE B4 1 165 -59 1 1131 376 242 105 0 chr9 71568091 71568186 -52507986 + PB1D7 SINE Alu 5 109 -11 1 1131 22 56 0 0 chr9 71568504 71568540 -52507632 + AT_rich Low_complexity Low_complexity 1 36 0 1 1131 215 262 12 12 chr9 71568646 71568727 -52507445 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1131 251 225 0 14 chr9 71570036 71570108 -52506064 + GA-rich Low_complexity Low_complexity 3 73 0 1 1131 685 199 160 20 chr9 71570662 71570862 -52505310 + B4A SINE B4 54 281 -11 1 1131 1380 73 15 20 chr9 71571092 71571287 -52504885 + B2_Mm2 SINE B2 2 195 0 1 1131 303 140 0 0 chr9 71572024 71572074 -52504098 + (ATG)n Simple_repeat Simple_repeat 1 50 0 1 1131 540 214 51 8 chr9 71572086 71572204 -52503968 + B4A SINE B4 2 124 -168 1 1131 207 0 0 0 chr9 71574025 71574048 -52502124 + (CCCTG)n Simple_repeat Simple_repeat 4 26 0 1 1131 372 307 121 0 chr9 71574426 71574566 -52501606 - RSINE1 SINE B4 -5 160 4 1 1131 592 247 94 6 chr9 71574667 71574826 -52501346 + B3A SINE B2 1 173 -25 1 1131 423 307 93 7 chr9 71575455 71575606 -52500566 - RSINE1 SINE B4 -1 164 1 1 1131 654 0 35 0 chr9 71575785 71575871 -52500301 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 1131 284 217 43 0 chr9 71576101 71576170 -52500002 - ID4 SINE ID -10 73 2 1 1131 195 42 0 0 chr9 71576180 71576204 -52499968 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1131 553 260 236 42 chr9 71577527 71577744 -52498428 + B4 SINE B4 16 274 -18 1 1131 243 0 0 0 chr9 71577754 71577781 -52498391 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1131 556 253 40 75 chr9 71578101 71578302 -52497870 - B3A SINE B2 -4 194 1 1 1131 879 244 50 5 chr9 71578674 71578872 -52497300 + B3 SINE B2 4 210 -6 1 1131 721 257 74 0 chr9 71579107 71579309 -52496863 + ID_B1 SINE B4 2 218 -6 1 1131 492 267 64 124 chr9 71579339 71579557 -52496615 + B3A SINE B2 2 206 -10 1 1131 270 81 0 0 chr9 71579736 71579773 -52496399 + (CTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1131 895 141 0 29 chr9 71579776 71579915 -52496257 - B1_Mur4 SINE Alu -13 137 3 1 1131 354 282 34 79 chr9 71580295 71580472 -52495700 - MER117 DNA MER1_type -28 169 1 1 1131 1200 74 0 0 chr9 71580671 71580819 -52495353 + B1_Mus1 SINE Alu 1 148 0 1 1131 302 331 61 67 chr9 71580928 71581093 -52495079 - HAL1-3A_ME LINE L1 -414 2444 2281 1 1131 334 248 0 14 chr9 71581093 71581236 -52494936 + CT-rich Low_complexity Low_complexity 4 144 0 1 1131 946 208 68 0 chr9 71581246 71581438 -52494734 - ID_B1 SINE B4 -18 206 2 1 1131 400 297 208 9 chr9 71582107 71582338 -52493834 + B4A SINE B4 2 278 -14 1 1131 429 109 0 0 chr9 71582352 71582416 -52493756 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1131 834 234 134 45 chr9 71582421 71582667 -52493505 + B4A SINE B4 4 271 -21 1 1131 886 190 4 31 chr9 71583262 71583470 -52492702 + B3 SINE B2 1 193 -2 1 1131 549 241 22 14 chr9 71583491 71583630 -52492542 + B1F SINE Alu 1 140 -9 1 1131 201 231 0 0 chr9 71584667 71584719 -52491453 + (CAGA)n Simple_repeat Simple_repeat 1 52 0 1 1131 1255 287 124 11 chr9 71584728 71585179 -52490993 + RMER5 LTR ERV1 33 534 0 1 1131 589 244 77 59 chr9 71585330 71585521 -52490651 + ID_B1 SINE B4 41 234 -58 1 1131 303 49 0 0 chr9 71586687 71586728 -52489444 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1131 1140 208 19 5 chr9 71586783 71586996 -52489176 + B3 SINE B2 1 216 0 1 1131 1131 223 38 52 chr9 71587037 71587326 -52488846 + B4 SINE B4 4 288 -4 1 1131 684 291 123 17 chr9 71587369 71587718 -52488454 + L1MC3 LINE L1 6231 6616 -1169 1 1131 216 111 0 0 chr9 71587734 71587770 -52488402 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1131 357 24 0 0 chr9 71587849 71587891 -52488281 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2 1131 773 44 88 7 chr9 71587891 71588027 -52488145 - RMER17B LTR ERVK -500 458 312 2 1131 513 271 53 84 chr9 71588030 71588256 -52487916 + L1MC3 LINE L1 6719 6937 -848 1 1131 922 253 59 9 chr9 71588352 71588591 -52487581 + ID_B1 SINE B4 2 245 -47 2 1131 246 277 0 0 chr9 71588596 71588661 -52487511 + L1MC3 LINE L1 7705 7769 -16 1 1131 345 203 26 122 chr9 71589830 71589945 -52486227 + L1MEg LINE L1 2423 2531 -4102 2 1131 521 311 80 28 chr9 71590118 71590330 -52485842 - MIRb SINE MIR -12 256 34 2 1131 698 266 109 15 chr9 71590953 71591155 -52485017 + ID_B1 SINE B4 1 221 -3 2 1131 250 152 34 0 chr9 71591549 71591608 -52484564 + CT-rich Low_complexity Low_complexity 2 62 0 2 1131 566 316 143 42 chr9 71591956 71592243 -52483929 - MLT1D LTR MaLR -178 327 12 2 1131 294 255 133 29 chr9 71592312 71592417 -52483755 + PB1D10 SINE Alu 1 116 -1 2 1131 204 318 45 0 chr9 71592724 71592790 -52483382 + L3 LINE CR1 4162 4230 -259 2 1131 386 178 27 0 chr9 71592813 71592885 -52483287 - RMER30 DNA MER1_type -25 177 104 2 1131 1024 185 6 0 chr9 71592885 71593042 -52483130 + B3 SINE B2 2 159 -57 2 1131 494 89 38 0 chr9 71593064 71593143 -52483029 + (GGAGAA)n Simple_repeat Simple_repeat 2 83 0 2 1131 261 119 0 0 chr9 71593141 71593183 -52482989 + (CGA)n Simple_repeat Simple_repeat 2 43 0 2 1131 360 0 0 0 chr9 71593976 71594016 -52482156 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1131 305 159 0 16 chr9 71594077 71594141 -52482031 + (CATA)n Simple_repeat Simple_repeat 1 63 0 2 1131 351 285 116 58 chr9 71594765 71594903 -52481269 - B4 SINE B4 0 292 147 2 1131 388 55 0 52 chr9 71594861 71594919 -52481253 + B1_Mur3 SINE Alu 67 121 -28 2 1131 437 266 291 0 chr9 71594943 71595101 -52481071 - B4 SINE B4 -87 205 2 2 1131 926 236 29 5 chr9 71595122 71595331 -52480841 - B3 SINE B2 0 216 3 2 1131 246 208 0 0 chr9 71595379 71595432 -52480740 + CT-rich Low_complexity Low_complexity 2 54 0 2 1131 426 223 132 0 chr9 71596003 71596124 -52480048 + B1F SINE Alu 5 141 -8 2 1131 26 30 0 0 chr9 71596661 71596694 -52479478 + AT_rich Low_complexity Low_complexity 1 33 0 2 1131 534 248 98 16 chr9 71596783 71596906 -52479266 - RSINE1 SINE B4 -20 145 13 2 1131 1122 81 0 45 chr9 71597097 71597252 -52478920 + B1_Mus1 SINE Alu 1 148 0 2 1131 190 306 87 24 chr9 71598218 71598345 -52477827 + L2a LINE L2 3190 3324 -102 2 1131 869 176 0 0 chr9 71598474 71598616 -52477556 + B1_Mus1 SINE Alu 7 148 0 2 1131 705 160 0 0 chr9 71598616 71598741 -52477431 + GA-rich Low_complexity Low_complexity 1 125 0 2 1131 1119 89 0 0 chr9 71598743 71598900 -52477272 + (GAAA)n Simple_repeat Simple_repeat 4 160 0 2 1131 552 73 0 0 chr9 71599347 71599429 -52476743 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 1131 817 175 100 78 chr9 71599531 71599568 -52476604 - B3A SINE B2 -10 185 135 2 1131 276 30 0 0 chr9 71599568 71599601 -52476571 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2 1131 915 144 22 0 chr9 71599601 71599743 -52476429 - B3 SINE B2 -51 147 2 2 1131 740 197 20 101 chr9 71599766 71599964 -52476208 + B3A SINE B2 1 182 -16 2 1131 254 250 0 0 chr9 71600034 71600086 -52476086 + PB1D7 SINE Alu 69 120 0 2 1131 204 205 0 0 chr9 71600831 71600870 -52475302 + GA-rich Low_complexity Low_complexity 1 39 0 2 1131 369 177 91 60 chr9 71602607 71602718 -52473454 - B1_Mur2 SINE Alu -1 119 11 2 1131 228 296 136 48 chr9 71602636 71602739 -52473433 - B4 SINE B4 -107 185 74 2 1131 928 87 49 42 chr9 71602748 71602892 -52473280 - B1_Mus1 SINE Alu -1 147 3 2 1131 396 0 0 0 chr9 71603048 71603092 -52473080 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1131 571 314 0 0 chr9 71603102 71603226 -52472946 - RSINE1 SINE B4 -21 144 21 2 1131 768 93 127 0 chr9 71603969 71604087 -52472085 - B1_Mus2 SINE Alu -12 135 3 2 1131 651 200 72 0 chr9 71604188 71604313 -52471859 + RSINE1 SINE B4 3 136 -29 2 1131 250 326 91 0 chr9 71604362 71604402 -52471770 + L1ME3 LINE L1 5883 5922 -240 2 1131 180 0 0 0 chr9 71604402 71604422 -52471750 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1131 250 326 91 0 chr9 71604422 71604513 -52471659 + L1ME3 LINE L1 5923 6025 -137 2 1131 250 341 23 23 chr9 71604549 71604636 -52471536 + MIRc SINE MIR 34 120 -148 2 1131 367 239 57 0 chr9 71605455 71605543 -52470629 + MIR SINE MIR 51 143 -119 2 1131 270 0 0 0 chr9 71605758 71605788 -52470384 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1131 213 94 0 0 chr9 71605966 71605998 -52470174 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1131 529 204 37 9 chr9 71606603 71606712 -52469460 + B1_Mur1 SINE Alu 38 149 0 2 1131 243 0 0 0 chr9 71607100 71607127 -52469045 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2 1131 350 115 16 0 chr9 71607127 71607188 -52468984 + (GAAAA)n Simple_repeat Simple_repeat 4 65 0 2 1131 192 182 0 0 chr9 71608432 71608476 -52467696 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1131 298 218 75 25 chr9 71609089 71609169 -52467003 + PB1D9 SINE Alu 23 106 -14 2 1131 264 282 148 61 chr9 71609309 71609491 -52466681 + L1MB3 LINE L1 5924 6121 -62 2 1131 180 0 0 0 chr9 71609528 71609548 -52466624 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1131 805 236 72 0 chr9 71609568 71609763 -52466409 + B3 SINE B2 1 209 -7 2 1131 200 211 61 12 chr9 71609921 71610001 -52466171 - MIRb SINE MIR -75 193 99 2 1131 309 254 14 0 chr9 71610264 71610335 -52465837 + ID4 SINE ID 3 74 -9 2 1131 982 135 0 93 chr9 71610420 71610592 -52465580 + URR1A DNA MER1_type 1 156 -70 2 1131 1198 55 0 0 chr9 71610592 71610737 -52465435 + B1_Mm SINE Alu 1 145 -2 2 1131 192 188 0 0 chr9 71610739 71610803 -52465369 + A-rich Low_complexity Low_complexity 1 64 0 2 1131 681 282 162 96 chr9 71610855 71611200 -52464972 - MTE2a LTR MaLR -6 373 6 2 1131 257 304 25 0 chr9 71611566 71611645 -52464527 - MER20 DNA MER1_type -59 160 80 2 1131 600 305 39 17 chr9 71611915 71612095 -52464077 - ID_B1 SINE B4 -33 191 8 2 1131 826 245 5 50 chr9 71612200 71612402 -52463770 + B3A SINE B2 6 198 0 2 1131 183 382 57 35 chr9 71612590 71612731 -52463441 + MIR SINE MIR 40 183 -79 2 1131 899 209 118 0 chr9 71613189 71613376 -52462796 - B3 SINE B2 -6 210 2 2 1131 297 0 0 0 chr9 71613395 71613428 -52462744 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1131 793 181 68 39 chr9 71613618 71613825 -52462347 + ID_B1 SINE B4 2 214 -10 2 1131 871 220 36 5 chr9 71614684 71614876 -52461296 - B3 SINE B2 -11 205 8 2 1131 747 263 78 0 chr9 71615099 71615304 -52460868 + ID_B1 SINE B4 4 224 0 2 1131 216 62 39 59 chr9 71615304 71615355 -52460817 + A-rich Low_complexity Low_complexity 4 53 0 2 1131 354 219 175 8 chr9 71615368 71615488 -52460684 - B1F SINE Alu -2 147 8 2 1131 206 250 25 89 chr9 71615564 71615643 -52460529 + MIR3 SINE MIR 1 74 -134 2 1131 378 0 0 0 chr9 71615836 71615878 -52460294 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1131 284 209 90 0 chr9 71616216 71616283 -52459889 + PB1D10 SINE Alu 27 99 -18 2 1131 689 189 70 8 chr9 71616413 71616541 -52459631 - RSINE1 SINE B4 -28 137 2 2 1131 253 152 15 29 chr9 71616832 71616900 -52459272 + GA-rich Low_complexity Low_complexity 4 70 0 2 1131 333 0 0 0 chr9 71617022 71617059 -52459113 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1131 201 283 0 0 chr9 71617371 71617417 -52458755 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 2 1131 235 205 32 192 chr9 71618497 71618684 -52457488 + MER5B DNA MER1_type 8 164 -14 2 1131 845 209 38 21 chr9 71620199 71620385 -52455787 + B3 SINE B2 2 190 -26 2 1131 407 231 89 133 chr9 71620496 71620631 -52455541 - RMER30 DNA MER1_type -36 166 38 2 1131 475 230 99 14 chr9 71620996 71621137 -52455035 - B3 SINE B2 -6 210 58 2 1131 225 178 0 0 chr9 71621155 71621200 -52454972 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1131 964 89 6 88 chr9 71621210 71621370 -52454802 - B1_Mus1 SINE Alu -1 147 1 2 1131 367 353 112 51 chr9 71622362 71622577 -52453595 - LTR16E1 LTR ERVL 0 538 311 2 1131 3111 57 2 187 chr9 71622611 71623146 -52453026 + RLTR10C LTR ERVK 1 436 0 2 1131 217 97 447 11 chr9 71623146 71623229 -52452943 - B2_Mm2 SINE B2 -10 185 61 2 1131 1095 130 12 6 chr9 71623293 71623463 -52452709 - B2_Mm1t SINE B2 -14 179 9 2 1131 378 321 77 60 chr9 71623555 71623790 -52452382 - RMER15 LTR ERVL 0 575 337 2 1131 721 265 130 8 chr9 71624425 71624672 -52451500 + B4A SINE B4 4 280 -12 2 1131 1835 180 86 13 chr9 71624680 71625063 -52451109 + MTD LTR MaLR 1 411 -8 2 1131 372 200 143 0 chr9 71625102 71625172 -52451000 - B1_Mur4 SINE Alu -65 85 6 2 1131 807 184 66 48 chr9 71625235 71625401 -52450771 + B3 SINE B2 2 170 -46 2 1131 196 186 70 0 chr9 71625439 71625482 -52450690 + L2b LINE L2 3329 3374 -1 2 1131 2346 90 18 21 chr9 71626051 71626381 -52449791 + ORR1A4 LTR MaLR 1 329 0 2 1131 784 260 29 48 chr9 71626852 71627062 -52449110 - ID_B1 SINE B4 -16 208 3 2 1131 235 122 41 0 chr9 71627243 71627292 -52448880 + T-rich Low_complexity Low_complexity 2 52 0 2 1131 290 345 16 77 chr9 71627354 71627486 -52448686 - MIRb SINE MIR -104 164 34 3 1131 401 270 55 89 chr9 71628018 71628279 -52447893 + ORR1E LTR MaLR 29 308 -51 3 1131 569 276 13 27 chr9 71628517 71628666 -52447506 + ORR1E LTR MaLR 4 150 -209 3 1131 477 271 0 48 chr9 71628699 71628823 -52447349 - PB1D9 SINE Alu 0 120 3 3 1131 519 286 116 18 chr9 71628869 71629033 -52447139 - B3A SINE B2 -16 182 3 3 1131 245 214 18 0 chr9 71629036 71629092 -52447080 + ORR1E LTR MaLR 139 195 -164 3 1131 625 226 107 0 chr9 71629121 71629245 -52446927 + MTD LTR MaLR 12 143 -276 3 1131 239 0 32 0 chr9 71629245 71629276 -52446896 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 3 1131 625 226 107 0 chr9 71629276 71629328 -52446844 + MTD LTR MaLR 144 206 -213 3 1131 10256 26 0 0 chr9 71629330 71630578 -52445594 - L1Md_T LINE L1 -563 5320 4073 3 1131 2498 20 0 3 chr9 71630567 71630867 -52445305 + L1Md_T LINE L1 5288 5586 -297 3 1131 9064 10 0 0 chr9 71630867 71631863 -52444309 + L1Md_T LINE L1 5587 6582 0 3 1131 7187 99 12 10 chr9 71631868 71633315 -52442857 + Lx LINE L1 5168 6614 -40 3 1131 992 199 57 14 chr9 71633315 71633528 -52442644 + MTD LTR MaLR 157 418 -1 3 1131 458 241 82 8 chr9 71633528 71633662 -52442510 + MTEb LTR MaLR 214 357 -22 3 1131 459 276 77 12 chr9 71633879 71634048 -52442124 - ORSL DNA Tip100 -12 263 84 3 1131 434 244 0 0 chr9 71634663 71634745 -52441427 + RSINE1 SINE B4 24 105 -60 3 1131 625 204 299 0 chr9 71635129 71635286 -52440886 - B3 SINE B2 -12 204 1 3 1131 594 292 87 6 chr9 71635292 71635304 -52440868 - B3A SINE B2 -11 187 175 3 1131 240 35 0 0 chr9 71635304 71635333 -52440839 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 3 1131 594 292 87 6 chr9 71635333 71635492 -52440680 - B3A SINE B2 -24 174 3 3 1131 293 194 0 107 chr9 71635576 71635651 -52440521 - B3 SINE B2 0 216 150 3 1131 247 141 0 86 chr9 71635667 71635737 -52440435 + (TATG)n Simple_repeat Simple_repeat 4 67 0 3 1131 827 271 5 5 chr9 71635770 71635970 -52440202 - B3 SINE B2 -13 203 4 3 1131 916 142 0 26 chr9 71636011 71636163 -52440009 - B1_Mur4 SINE Alu -2 148 1 3 1131 333 0 0 0 chr9 71636619 71636656 -52439516 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 1131 3327 167 81 23 chr9 71636698 71637352 -52438820 - RLTR17 LTR ERVK 0 692 1 3 1131 247 310 69 15 chr9 71637388 71637519 -52438653 + L1MB3 LINE L1 6046 6183 0 3 1131 813 246 53 15 chr9 71637686 71637892 -52438280 + B3 SINE B2 1 214 -2 3 1131 207 367 21 53 chr9 71638075 71638170 -52438002 - MIR SINE MIR -166 96 5 3 1131 834 178 0 40 chr9 71638255 71638290 -52437882 + B1_Mus2 SINE Alu 1 35 -112 3 1131 3507 35 0 0 chr9 71638290 71638686 -52437486 - MTA_Mm LTR MaLR 0 396 1 3 1131 834 178 0 40 chr9 71638686 71638802 -52437370 + B1_Mus2 SINE Alu 36 146 -1 3 1131 304 192 0 0 chr9 71638835 71638887 -52437285 - B4 SINE B4 -217 75 24 3 1131 462 264 83 51 chr9 71639560 71639716 -52436456 + RSINE1 SINE B4 3 163 -2 3 1131 230 197 0 27 chr9 71639719 71639792 -52436380 + (CATA)n Simple_repeat Simple_repeat 2 72 0 3 1131 584 283 154 8 chr9 71639873 71640140 -52436032 + ORR1E LTR MaLR 16 321 -38 3 1131 945 218 91 0 chr9 71640163 71640360 -52435812 - B3 SINE B2 0 216 2 3 1131 221 150 16 32 chr9 71640373 71640382 -52435790 + (TTTG)n Simple_repeat Simple_repeat 1 9 0 3 1131 582 15 0 0 chr9 71640382 71640449 -52435723 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 3 1131 221 150 16 32 chr9 71640449 71640501 -52435671 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 3 1131 665 161 119 0 chr9 71640502 71640620 -52435552 - B1_Mur3 SINE Alu -1 148 17 3 1131 306 331 33 0 chr9 71640622 71640773 -52435399 - L1MC4a LINE L1 -596 7286 7131 3 1131 246 285 114 15 chr9 71640825 71640957 -52435215 - L1MC4a LINE L1 -744 7138 6994 3 1131 242 222 259 0 chr9 71641371 71641452 -52434720 - PB1D7 SINE Alu -7 113 12 3 1131 330 272 162 4 chr9 71641478 71641713 -52434459 - L1MC4a LINE L1 -1020 6862 6605 3 1131 1292 60 0 6 chr9 71641762 71641929 -52434243 + B2_Mm2 SINE B2 1 166 -29 3 1131 461 229 112 50 chr9 71642032 71642211 -52433961 - L1MC4a LINE L1 -1348 6534 6345 3 1131 23 0 0 0 chr9 71642348 71642371 -52433801 + AT_rich Low_complexity Low_complexity 1 23 0 3 1131 530 307 0 41 chr9 71642371 71642541 -52433631 + RSINE1 SINE B4 3 165 0 3 1131 842 157 7 7 chr9 71642673 71642808 -52433364 - B1_Mur1 SINE Alu -3 146 12 3 1131 438 271 94 17 chr9 71642809 71642930 -52433242 - L1ME1 LINE L1 -56 6123 6004 3 1131 321 26 0 0 chr9 71642930 71642968 -52433204 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1131 438 271 94 17 chr9 71642968 71643026 -52433146 - L1ME1 LINE L1 -176 6003 5930 3 1131 1042 211 138 17 chr9 71643153 71643443 -52432729 + MTE2b LTR MaLR 1 325 -54 3 1131 624 129 0 0 chr9 71643444 71643545 -52432627 + (TTTC)n Simple_repeat Simple_repeat 1 101 0 3 1131 1465 58 21 5 chr9 71643565 71643754 -52432418 - B2_Mm2 SINE B2 -2 193 2 3 1131 255 179 54 95 chr9 71643754 71643828 -52432344 + MTE2b LTR MaLR 309 379 0 3 1131 189 107 0 0 chr9 71643979 71644007 -52432165 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1131 678 214 122 11 chr9 71644030 71644219 -52431953 + B3 SINE B2 3 212 -4 3 1131 437 283 31 88 chr9 71644222 71644381 -52431791 + B4A SINE B4 2 151 -141 3 1131 1324 146 343 3 chr9 71644391 71644700 -52431472 - MTD LTR MaLR -2 417 4 3 1131 198 0 0 0 chr9 71645102 71645124 -52431048 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1131 434 105 23 0 chr9 71645824 71645910 -52430262 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 3 1131 335 337 0 0 chr9 71646180 71646269 -52429903 + ORR1E LTR MaLR 4 92 -267 3 1131 234 300 86 52 chr9 71646362 71646478 -52429694 + MLT1H LTR MaLR 430 549 0 3 1131 483 226 0 0 chr9 71648273 71648437 -52427735 + GA-rich Low_complexity Low_complexity 1 164 0 3 1131 340 154 0 0 chr9 71648437 71648489 -52427683 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 3 1131 458 288 104 29 chr9 71648573 71648859 -52427313 - L1M3 LINE L1 -397 5781 5480 3 1131 355 272 7 7 chr9 71648953 71649101 -52427071 + CT-rich Low_complexity Low_complexity 2 149 0 3 1131 397 181 27 27 chr9 71649160 71649234 -52426938 - ID4_ SINE ID -8 75 2 3 1131 315 71 0 0 chr9 71649314 71649356 -52426816 + (CACG)n Simple_repeat Simple_repeat 3 44 0 3 1131 548 205 150 0 chr9 71651075 71651202 -52424970 - B1_Mur1 SINE Alu -1 148 3 3 1131 477 243 36 284 chr9 71651748 71651935 -52424237 - MLT1B LTR MaLR -81 309 181 3 1131 351 0 0 0 chr9 71651935 71651974 -52424198 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1131 477 243 36 284 chr9 71651974 71652142 -52424030 - MLT1B LTR MaLR -210 180 42 3 1131 267 152 0 0 chr9 71652302 71652348 -52423824 + (CAA)n Simple_repeat Simple_repeat 2 47 0 3 1131 750 188 237 17 chr9 71652481 71652654 -52423518 - B3 SINE B2 -5 211 1 3 1131 426 275 123 64 chr9 71652693 71652864 -52423308 + B3A SINE B2 2 182 -16 3 1131 381 122 0 0 chr9 71652884 71652958 -52423214 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1131 261 247 163 5 chr9 71653047 71653164 -52423008 - PB1D10 SINE Alu -6 143 15 3 1131 389 169 0 0 chr9 71654492 71654558 -52421614 - Lx7 LINE L1 -582 7114 7051 3 1131 758 279 42 21 chr9 71654558 71654796 -52421376 + Lx7 LINE L1 7118 7360 -336 3 1131 399 89 0 0 chr9 71654901 71654957 -52421215 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1131 279 0 0 0 chr9 71654958 71654989 -52421183 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1131 1233 68 0 0 chr9 71654991 71655139 -52421033 - B1_Mus1 SINE Alu 0 148 1 3 1131 201 163 0 0 chr9 71655234 71655283 -52420889 + G-rich Low_complexity Low_complexity 2 50 0 3 1131 594 301 22 33 chr9 71655969 71656156 -52420016 + B3 SINE B2 2 183 -10 3 1131 22 0 0 0 chr9 71656156 71656178 -52419994 + AT_rich Low_complexity Low_complexity 1 22 0 3 1131 459 292 34 14 chr9 71656178 71656324 -52419848 - B1F SINE Alu 0 149 1 3 1131 917 166 0 0 chr9 71656346 71656491 -52419681 + B1_Mus2 SINE Alu 3 147 0 3 1131 255 189 57 0 chr9 71656515 71656568 -52419604 - ID SINE ID -157 67 12 3 1131 180 0 0 0 chr9 71657306 71657326 -52418846 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 3 1131 1763 120 291 15 chr9 71657622 71657952 -52418220 + MTC LTR MaLR 1 421 0 3 1131 351 68 0 0 chr9 71657952 71657996 -52418176 - RMER2 LTR ERV1 -523 44 1 3 1131 374 337 90 65 chr9 71658534 71658734 -52417438 + B4A SINE B4 70 274 -18 3 1131 755 139 25 0 chr9 71658814 71658936 -52417236 + B1_Mur1 SINE Alu 25 149 0 3 1131 342 233 69 202 chr9 71658815 71659003 -52417169 + B4A SINE B4 111 273 -19 3 1131 1280 231 32 38 chr9 71660508 71660854 -52415318 + Charlie19a DNA Charlie 43 386 0 3 1131 408 289 75 80 chr9 71661137 71661325 -52414847 + B3A SINE B2 11 197 -1 3 1131 846 244 162 66 chr9 71662708 71662875 -52413297 - RLTR9A LTR ERVK 0 368 212 3 1131 3570 15 8 0 chr9 71662875 71663268 -52412904 - MTA_Mm LTR MaLR 0 396 1 3 1131 846 244 162 66 chr9 71663268 71663434 -52412738 - RLTR9A LTR ERVK -157 211 4 3 1131 1009 234 33 5 chr9 71663655 71663865 -52412307 - B3 SINE B2 0 216 1 3 1131 816 232 160 11 chr9 71663869 71664056 -52412116 - ID_B1 SINE B4 -3 221 7 3 1131 1308 104 6 0 chr9 71664178 71664361 -52411811 + B2_Mm2 SINE B2 2 185 -10 3 1131 1214 108 38 0 chr9 71664368 71664554 -52411618 + B2_Mm2 SINE B2 2 194 -1 3 1131 374 239 94 107 chr9 71664564 71664723 -52411449 + ID_B1 SINE B4 15 171 -53 3 1131 508 174 10 20 chr9 71664641 71664741 -52411431 + PB1D10 SINE Alu 9 107 -10 3 1131 189 204 58 58 chr9 71664763 71664815 -52411357 + L3 LINE CR1 860 911 -3578 3 1131 197 130 14 55 chr9 71665837 71665910 -52410262 + G-rich Low_complexity Low_complexity 3 72 0 3 1131 1077 190 53 19 chr9 71666478 71666687 -52409485 + B3 SINE B2 1 216 0 3 1131 803 281 19 19 chr9 71666714 71666921 -52409251 + ID_B1 SINE B4 1 207 -17 3 1131 1632 37 0 0 chr9 71667160 71667349 -52408823 - B2_Mm1a SINE B2 -3 190 2 3 1131 269 327 47 132 chr9 71667352 71667609 -52408563 - ORR1E LTR MaLR -61 298 64 4 1131 1742 149 12 53 chr9 71667645 71667985 -52408187 + ORR1C1 LTR MaLR 1 326 -52 4 1131 287 246 36 10 chr9 71668063 71668164 -52408008 + ORR1C1 LTR MaLR 314 419 0 4 1131 3063 141 75 19 chr9 71668309 71668844 -52407328 + RLTR12A LTR ERVK 1 565 -3 4 1131 907 275 82 4 chr9 71668851 71669121 -52407051 + B4 SINE B4 2 292 0 4 1131 1364 87 16 0 chr9 71669200 71669384 -52406788 - B2_Mm2 SINE B2 -7 188 2 4 1131 360 0 0 0 chr9 71669995 71670035 -52406137 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1131 402 179 52 21 chr9 71670594 71670691 -52405481 - RLTR23 LTR ERV1 0 430 331 4 1131 2284 146 22 3 chr9 71671125 71671496 -52404676 + ORR1C1 LTR MaLR 1 378 0 4 1131 295 326 88 22 chr9 71671689 71671871 -52404301 - RMER15 LTR ERVL -50 525 332 4 1131 936 252 76 37 chr9 71672140 71672523 -52403649 + L1MC1 LINE L1 5580 5977 -356 4 1131 322 303 16 24 chr9 71672692 71672817 -52403355 + CT-rich Low_complexity Low_complexity 4 127 0 4 1131 439 225 23 132 chr9 71672817 71672991 -52403181 + RMER15 LTR ERVL 1 155 -420 4 1131 303 229 278 21 chr9 71673495 71673682 -52402490 + RMER15 LTR ERVL 341 575 0 4 1131 1967 162 57 15 chr9 71674486 71674875 -52401297 + MTB_Mm LTR MaLR 1 405 -2 4 1131 1189 201 5 0 chr9 71675537 71675751 -52400421 - B3 SINE B2 0 216 2 4 1131 335 247 10 10 chr9 71676054 71676152 -52400020 + ORR1D2 LTR MaLR 1 98 -272 4 1131 300 318 123 31 chr9 71676214 71676344 -52399828 - B4A SINE B4 -118 174 33 4 1131 234 136 0 22 chr9 71676371 71676416 -52399756 - PB1D10 SINE Alu -2 115 72 4 1131 512 255 189 11 chr9 71676489 71676679 -52399493 - ORR1D2 LTR MaLR -21 349 126 4 1131 322 292 0 0 chr9 71676764 71676836 -52399336 + B4A SINE B4 221 292 0 4 1131 236 30 0 29 chr9 71676863 71676897 -52399275 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1131 229 286 57 0 chr9 71677143 71677213 -52398959 - PB1D10 SINE Alu -29 88 15 4 1131 346 269 48 0 chr9 71677151 71677255 -52398917 - ID_B1 SINE B4 -66 158 50 4 1131 381 97 28 28 chr9 71677277 71677383 -52398789 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 1131 355 317 109 14 chr9 71677389 71677536 -52398636 - RSINE1 SINE B4 -3 162 2 4 1131 512 200 19 28 chr9 71678571 71678679 -52397493 + RSINE1 SINE B4 59 165 0 4 1131 450 143 0 0 chr9 71678681 71678758 -52397414 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1131 316 270 201 24 chr9 71679467 71679676 -52396496 - ORSL DNA Tip100 0 275 30 4 1131 222 264 70 36 chr9 71680461 71680598 -52395574 - MIRm SINE MIR -52 156 15 4 1131 759 239 9 124 chr9 71681144 71681247 -52394925 - ID_B1 SINE B4 -11 213 136 4 1131 1398 64 5 26 chr9 71681247 71681440 -52394732 - B2_Mm2 SINE B2 -6 189 1 4 1131 759 239 9 124 chr9 71681440 71681561 -52394611 - ID_B1 SINE B4 -89 135 15 4 1131 344 255 108 36 chr9 71681654 71681821 -52394351 + MLT2B4 LTR ERVL 53 231 -325 4 1131 531 294 7 7 chr9 71682584 71682721 -52393451 - RSINE1 SINE B4 0 165 29 4 1131 984 61 0 0 chr9 71685996 71686127 -52390045 + B1_Mm SINE Alu 17 147 0 4 1131 460 217 115 7 chr9 71686149 71686288 -52389884 - L1MA8 LINE L1 -6 6285 6132 4 1131 257 272 155 0 chr9 71686273 71686376 -52389796 + Lx7 LINE L1 5615 5733 -1963 4 1131 423 202 23 109 chr9 71686385 71686513 -52389659 + ID_B1 SINE B4 99 215 -9 4 1131 300 241 30 151 chr9 71686533 71686579 -52389593 + L1MA4 LINE L1 5760 5797 -503 4 1131 966 157 0 0 chr9 71686579 71686726 -52389446 - B1_Mur3 SINE Alu 0 149 3 4 1131 300 241 30 151 chr9 71686726 71686845 -52389327 + L1MA4 LINE L1 5798 5905 -395 4 1131 899 164 20 7 chr9 71687110 71687257 -52388915 - B1_Mur3 SINE Alu 0 149 1 4 1131 240 272 62 52 chr9 71687462 71687559 -52388613 - L1MA8 LINE L1 -186 6105 6008 4 1131 494 266 45 10 chr9 71687603 71687780 -52388392 - L1MB1 LINE L1 -361 5828 5611 4 1131 291 108 0 30 chr9 71687797 71687864 -52388308 - B2_Mm2 SINE B2 0 195 131 4 1131 1196 131 11 0 chr9 71687919 71688095 -52388077 - B2_Mm1t SINE B2 -14 179 2 4 1131 300 191 0 31 chr9 71688095 71688160 -52388012 - L1MA8 LINE L1 -649 5663 5601 4 1131 703 194 50 14 chr9 71688232 71688373 -52387799 + B1_Mur1 SINE Alu 2 147 -2 4 1131 567 254 57 46 chr9 71688396 71688590 -52387582 + B3A SINE B2 3 198 0 4 1131 245 262 16 47 chr9 71688596 71688660 -52387512 - PB1D7 SINE Alu -58 62 1 4 1131 950 204 50 5 chr9 71688680 71688882 -52387290 - B3 SINE B2 -4 212 2 4 1131 276 276 43 0 chr9 71688917 71689033 -52387139 - L1MA8 LINE L1 -1374 4769 4649 4 1131 573 259 36 0 chr9 71689091 71689230 -52386942 - RSINE1 SINE B4 -7 158 15 4 1131 657 220 229 12 chr9 71689234 71689561 -52386611 - L1MA8 LINE L1 -1460 4683 4286 4 1131 441 293 98 37 chr9 71689561 71689724 -52386448 - ID_B1 SINE B4 -14 210 38 4 1131 529 165 174 0 chr9 71690493 71690608 -52385564 + B1_Mur3 SINE Alu 9 143 -6 4 1131 189 0 0 0 chr9 71690610 71690631 -52385541 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1131 370 267 96 0 chr9 71690805 71690951 -52385221 - MIR SINE MIR 0 262 103 4 1131 507 17 0 0 chr9 71691001 71691061 -52385111 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1131 209 171 0 0 chr9 71691593 71691628 -52384544 + (CATG)n Simple_repeat Simple_repeat 1 35 0 4 1131 574 255 86 16 chr9 71694521 71694708 -52381464 - Tigger7 DNA MER2_type 0 2491 2292 4 1131 654 203 65 0 chr9 71694716 71694854 -52381318 - B1_Mur1 SINE Alu -1 148 2 4 1131 800 186 7 40 chr9 71695204 71695355 -52380817 + B1_Mur4 SINE Alu 5 150 0 4 1131 1414 61 22 0 chr9 71695535 71695716 -52380456 + B2_Mm1a SINE B2 4 188 -5 4 1131 593 270 7 7 chr9 71695801 71695950 -52380222 - RSINE1 SINE B4 -15 150 2 4 1132 853 166 0 27 chr9 71696714 71696863 -52379309 + B1_Mur1 SINE Alu 5 149 0 4 1132 216 86 0 0 chr9 71696867 71696902 -52379270 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1132 849 140 18 0 chr9 71698424 71698588 -52377584 + CT-rich Low_complexity Low_complexity 2 168 0 4 1132 486 304 7 0 chr9 71698728 71698863 -52377309 + B3 SINE B2 1 136 -80 4 1132 368 200 0 15 chr9 71698882 71698948 -52377224 - PB1D9 SINE Alu -54 66 2 4 1132 212 220 20 0 chr9 71699352 71699402 -52376770 + B3A SINE B2 1 51 -147 4 1132 1166 119 11 6 chr9 71700324 71700501 -52375671 - B2_Mm1t SINE B2 -14 179 2 4 1132 231 197 148 0 chr9 71700826 71700887 -52375285 - HAL1 LINE L1 -1048 1459 1390 4 1132 470 331 0 48 chr9 71700908 71701073 -52375099 - RSINE1 SINE B4 -6 159 3 4 1132 194 298 70 23 chr9 71701317 71701403 -52374769 + MER5B DNA MER1_type 87 176 -2 4 1132 3080 174 50 5 chr9 71701948 71702532 -52373640 + Lx5 LINE L1 6437 7046 -4 4 1132 1182 48 7 0 chr9 71702962 71703107 -52373065 + B1_Mus2 SINE Alu 2 147 0 4 1132 241 84 33 78 chr9 71703107 71703197 -52372975 + (CAAA)n Simple_repeat Simple_repeat 3 88 0 4 1132 248 301 108 0 chr9 71704893 71704986 -52371186 + Cheshire DNA MER1_type 172 274 -2146 4 1132 461 209 12 0 chr9 71705484 71705570 -52370602 + PB1D10 SINE Alu 2 88 -29 4 1132 401 322 73 6 chr9 71705796 71705974 -52370198 - MER58A DNA MER1_type 0 224 35 4 1132 204 40 0 0 chr9 71706162 71706187 -52369985 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1132 513 0 0 0 chr9 71706802 71706859 -52369313 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 4 1132 454 294 0 0 chr9 71706875 71706967 -52369205 - PB1 SINE Alu -35 92 1 4 1132 231 217 9 209 chr9 71706967 71706980 -52369192 - MT2B2 LTR ERVL -345 239 156 4 1132 726 268 67 33 chr9 71708329 71708599 -52367573 + B4A SINE B4 2 280 -12 4 1132 1288 83 38 16 chr9 71708784 71708968 -52367204 - B2_Mm2 SINE B2 -6 189 2 4 1132 219 326 120 0 chr9 71710450 71710542 -52365630 + B4A SINE B4 2 104 -188 4 1132 236 280 55 91 chr9 71710566 71710630 -52365542 + B4 SINE B4 175 242 -50 4 1132 891 166 14 7 chr9 71710630 71710776 -52365396 + B1_Mm SINE Alu 1 147 0 4 1132 236 280 55 91 chr9 71710776 71710821 -52365351 + B4 SINE B4 243 280 -12 4 1132 227 333 0 0 chr9 71711103 71711166 -52365006 - RSINE1 SINE B4 -19 146 84 4 1132 1081 149 226 19 chr9 71711886 71712152 -52364020 - RMER6C LTR ERVK 0 690 370 4 1132 367 217 64 5 chr9 71712226 71712318 -52363854 - PB1D9 SINE Alu -219 95 2 4 1132 491 152 16 132 chr9 71712318 71712411 -52363761 - MT2B LTR ERVL -342 259 181 4 1132 248 193 53 0 chr9 71712395 71712452 -52363720 - RMER6C LTR ERVK -579 111 52 4 1132 656 157 52 59 chr9 71712687 71712822 -52363350 + B1_Mur1 SINE Alu 9 142 -7 4 1132 200 222 0 0 chr9 71712827 71712872 -52363300 + A-rich Low_complexity Low_complexity 1 45 0 4 1132 283 175 0 0 chr9 71714151 71714208 -52361964 + PB1D9 SINE Alu 40 96 -24 4 1132 484 241 71 0 chr9 71714405 71714517 -52361655 - PB1D9 SINE Alu 0 120 1 4 1132 210 119 0 45 chr9 71714647 71714691 -52361481 + A-rich Low_complexity Low_complexity 1 42 0 4 1132 330 311 0 0 chr9 71715320 71715394 -52360778 - ID4_ SINE ID -6 77 4 4 1132 343 239 106 0 chr9 71715399 71715512 -52360660 - PB1 SINE Alu -2 125 1 4 1132 258 95 0 0 chr9 71717775 71717817 -52358355 + (CAA)n Simple_repeat Simple_repeat 1 42 0 4 1132 24 53 0 0 chr9 71718175 71718213 -52357959 + AT_rich Low_complexity Low_complexity 1 38 0 4 1132 575 176 8 56 chr9 71718367 71718493 -52357679 - PB1D9 SINE Alu 0 120 1 4 1132 1206 68 0 0 chr9 71719157 71719303 -52356869 + B1_Mus2 SINE Alu 2 147 0 4 1132 454 136 0 0 chr9 71719681 71719747 -52356425 + ID2 SINE ID 1 66 -17 4 1132 674 147 0 9 chr9 71720628 71720738 -52355434 - B1_Mur1 SINE Alu -7 142 34 4 1132 362 315 122 42 chr9 71721358 71721646 -52354526 + MLT1L LTR MaLR 30 340 -270 5 1132 400 248 70 31 chr9 71721752 71721881 -52354291 + B1_Mur1 SINE Alu 16 149 0 5 1132 1040 89 0 0 chr9 71723198 71723333 -52352839 + B1_Mus1 SINE Alu 2 136 -12 5 1132 207 0 0 0 chr9 71723333 71723356 -52352816 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1132 630 127 188 16 chr9 71723477 71723605 -52352567 - B1_Mur4 SINE Alu 0 150 1 5 1132 313 250 0 0 chr9 71724147 71724211 -52351961 - ID_B1 SINE B4 0 224 161 5 1132 1067 100 65 22 chr9 71724217 71724401 -52351771 - B2_Mm2 SINE B2 -2 193 2 5 1132 222 136 68 0 chr9 71724405 71724449 -52351723 + T-rich Low_complexity Low_complexity 2 48 0 5 1132 353 247 0 21 chr9 71724536 71724631 -52351541 + ID_B1 SINE B4 94 186 -38 5 1132 391 201 12 22 chr9 71724631 71724644 -52351528 + PB1D10 SINE Alu 13 124 -25 5 1132 397 300 82 16 chr9 71724650 71724772 -52351400 + B1F1 SINE Alu 18 147 -2 5 1132 259 368 42 0 chr9 71724912 71725007 -52351165 - PB1D10 SINE Alu -17 100 2 5 1132 730 229 0 0 chr9 71725019 71725159 -52351013 + B1_Mur2 SINE Alu 1 140 -9 5 1132 639 150 0 74 chr9 71725265 71725387 -52350785 + B1_Mus1 SINE Alu 1 113 -35 5 1132 312 318 36 48 chr9 71725387 71725425 -52350747 + B4A SINE B4 86 243 -49 5 1132 696 216 133 18 chr9 71726382 71726547 -52349625 - B4 SINE B4 -4 288 105 5 1132 528 295 20 13 chr9 71729290 71729441 -52346731 + MIRb SINE MIR 98 249 -19 5 1132 200 195 24 0 chr9 71729504 71729545 -52346627 - L2b LINE L2 -9 3366 3325 5 1132 251 237 17 0 chr9 71731103 71731162 -52345010 + ID4 SINE ID 3 62 -21 5 1132 561 262 174 44 chr9 71731736 71732036 -52344136 + MTE2a LTR MaLR 24 410 -9 5 1132 198 0 0 0 chr9 71732857 71732879 -52343293 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 5 1132 908 173 18 6 chr9 71733677 71733840 -52342332 + RLTR17 LTR ERVK 208 372 -320 5 1132 342 0 0 0 chr9 71733840 71733878 -52342294 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1132 4480 57 50 2 chr9 71734083 71734665 -52341507 + L1Md_F2 LINE L1 5973 6582 0 5 1132 23 54 0 0 chr9 71734874 71734911 -52341261 + AT_rich Low_complexity Low_complexity 1 37 0 5 1132 181 263 133 57 chr9 71734967 71735072 -52341100 + MIRb SINE MIR 116 228 -40 5 1132 806 226 70 30 chr9 71735390 71735591 -52340581 + B3 SINE B2 1 209 -7 5 1132 534 171 16 18 chr9 71736061 71736181 -52339991 + B1_Mus2 SINE Alu 1 146 -1 5 1132 378 0 0 0 chr9 71737325 71737367 -52338805 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1132 267 280 118 0 chr9 71737530 71737623 -52338549 + Charlie5 DNA MER1_type 2 105 -2519 5 1132 223 242 16 16 chr9 71737790 71737853 -52338319 + ID4_ SINE ID 3 65 -18 5 1132 23 0 0 0 chr9 71738070 71738093 -52338079 + AT_rich Low_complexity Low_complexity 1 23 0 5 1132 577 128 195 23 chr9 71739252 71739380 -52336792 - B1_Mur4 SINE Alu 0 150 1 5 1132 294 257 0 0 chr9 71740378 71740448 -52335724 + ID4_ SINE ID 2 71 -12 5 1132 212 312 11 0 chr9 71740448 71740541 -52335631 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1132 240 196 0 0 chr9 71740451 71740502 -52335670 + (CAGAGA)n Simple_repeat Simple_repeat 6 56 0 5 1132 207 297 101 30 chr9 71740665 71740803 -52335369 + MIRb SINE MIR 8 165 -103 5 1132 21 36 0 0 chr9 71741049 71741077 -52335095 + AT_rich Low_complexity Low_complexity 1 28 0 5 1132 23 0 0 0 chr9 71741233 71741256 -52334916 + AT_rich Low_complexity Low_complexity 1 23 0 5 1132 423 0 0 0 chr9 71744141 71744188 -52331984 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1132 180 0 0 0 chr9 71744188 71744207 -52331965 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1132 204 40 0 0 chr9 71744207 71744231 -52331941 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1132 270 0 0 0 chr9 71746006 71746036 -52330136 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5 1132 946 184 71 10 chr9 71746137 71746335 -52329837 + B3 SINE B2 2 211 -5 5 1132 1096 88 0 0 chr9 71746356 71746503 -52329669 + B2_Mm2 SINE B2 4 150 -45 5 1132 1039 88 0 33 chr9 71747462 71747614 -52328558 + B1_Mus1 SINE Alu 2 148 0 5 1132 302 145 0 73 chr9 71747614 71747696 -52328476 + A-rich Low_complexity Low_complexity 1 76 0 5 1132 484 238 40 0 chr9 71748227 71748328 -52327844 + PB1D7 SINE Alu 9 113 -7 5 1132 273 230 248 0 chr9 71748328 71748340 -52327832 + B4A SINE B4 94 234 -58 5 1132 22 0 0 0 chr9 71749827 71749849 -52326323 + AT_rich Low_complexity Low_complexity 1 22 0 5 1132 486 129 0 0 chr9 71750264 71750334 -52325838 - B2_Mm2 SINE B2 -124 71 2 5 1132 525 101 26 9 chr9 71750375 71750469 -52325703 - B1_Mus2 SINE Alu 0 147 29 5 1132 821 233 73 17 chr9 71750597 71750798 -52325374 + B3 SINE B2 1 188 -7 5 1132 7576 44 37 0 chr9 71750802 71751739 -52324433 + L1_Mus1 LINE L1 5596 6567 0 5 1132 378 234 126 0 chr9 71752155 71752257 -52323915 + PB1D7 SINE Alu 15 130 -19 5 1132 311 287 10 21 chr9 71752433 71752529 -52323643 + U6 snRNA snRNA 1 95 -12 5 1132 1537 156 38 99 chr9 71752741 71753103 -52323069 + ORR1B1 LTR MaLR 1 370 -24 5 1132 276 230 129 54 chr9 71754465 71754612 -52321560 - L2 LINE L2 -449 2970 2813 5 1132 713 176 92 0 chr9 71755325 71755456 -52320716 - B1_Mur4 SINE Alu -6 144 2 5 1132 866 75 12 53 chr9 71755699 71755868 -52320304 + Lx LINE L1 6489 6650 -4 5 1132 491 352 34 34 chr9 71756293 71756499 -52319673 + MER58A DNA MER1_type 1 206 -18 5 1132 397 153 26 162 chr9 71757622 71757739 -52318433 + PB1D9 SINE Alu 20 120 0 5 1132 212 296 0 53 chr9 71757789 71757810 -52318362 - ID_B1 SINE B4 -67 157 87 5 1132 231 264 0 19 chr9 71757810 71757864 -52318308 - B1F2 SINE Alu -91 58 6 5 1132 430 146 0 0 chr9 71758748 71758876 -52317296 + L1Md_F2 LINE L1 6499 6582 0 5 1132 1139 42 14 0 chr9 71759688 71759830 -52316342 + B1_Mur4 SINE Alu 1 144 -6 5 1132 231 257 0 86 chr9 71760087 71760168 -52316004 + BC1_Mm scRNA scRNA 23 96 -56 5 1132 524 271 53 0 chr9 71760210 71760343 -52315829 - B1F1 SINE Alu -9 140 1 5 1132 278 250 59 0 chr9 71761374 71761442 -52314730 + ID4_ SINE ID 11 82 -1 5 1132 322 213 52 26 chr9 71761472 71761549 -52314623 + ID4 SINE ID 3 81 -2 5 1132 189 289 107 12 chr9 71761562 71761646 -52314526 - MIRb SINE MIR -142 126 35 5 1132 459 279 0 18 chr9 71762644 71762757 -52313415 - PB1D10 SINE Alu -2 115 5 5 1132 488 250 103 0 chr9 71762794 71762910 -52313262 - B1_Mur1 SINE Alu -9 140 13 5 1132 406 286 36 98 chr9 71765608 71765802 -52310370 - B3A SINE B2 -16 182 1 5 1132 404 292 62 0 chr9 71766704 71766817 -52309355 - B3 SINE B2 -30 186 67 5 1132 390 42 0 0 chr9 71767463 71767511 -52308661 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 1132 821 149 13 9 chr9 71767525 71767672 -52308500 - B2_Mm2 SINE B2 -57 159 2 5 1132 37 69 0 0 chr9 71768094 71768166 -52308006 + AT_rich Low_complexity Low_complexity 1 72 0 5 1132 1122 62 14 0 chr9 71768732 71768877 -52307295 + B1_Mus2 SINE Alu 1 147 0 5 1132 350 125 12 0 chr9 71768884 71768964 -52307208 + (CAAAAA)n Simple_repeat Simple_repeat 4 84 0 5 1132 589 168 88 68 chr9 71769078 71769225 -52306947 + B1_Mur4 SINE Alu 1 150 0 5 1132 221 75 25 0 chr9 71769225 71769265 -52306907 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 5 1132 622 244 148 39 chr9 71769290 71769485 -52306687 + Lx9 LINE L1 7223 7440 -204 5 1132 1220 79 50 11 chr9 71769485 71769665 -52306507 + B2_Mm2 SINE B2 1 187 -8 5 1132 622 244 148 39 chr9 71769665 71769827 -52306345 + Lx9 LINE L1 7441 7619 -25 5 1132 30 0 0 0 chr9 71769827 71769857 -52306315 + AT_rich Low_complexity Low_complexity 1 30 0 5 1132 4223 76 27 3 chr9 71770721 71771316 -52304856 + L1_Mur1 LINE L1 4856 5464 -422 5 1132 592 226 0 116 chr9 71771330 71771445 -52304727 - B3A SINE B2 -60 138 39 5 1132 1599 27 21 0 chr9 71771445 71771633 -52304539 - B2_Mm1t SINE B2 0 193 2 5 1132 592 226 0 116 chr9 71771633 71771672 -52304500 - B3A SINE B2 -160 38 2 5 1132 282 272 21 11 chr9 71771672 71771765 -52304407 - L1MD LINE L1 -1873 4273 4180 5 1132 296 112 345 36 chr9 71771919 71772032 -52304140 - B2_Mm2 SINE B2 -1 194 47 5 1132 1237 107 11 0 chr9 71772058 71772235 -52303937 - B2_Mm1t SINE B2 -14 179 1 5 1132 516 317 63 16 chr9 71772260 71772449 -52303723 - B3A SINE B2 0 198 1 5 1132 431 234 207 0 chr9 71772521 71772632 -52303540 - B1_Mur1 SINE Alu -14 135 2 5 1132 550 276 210 27 chr9 71772712 71773289 -52302883 - L1M4 LINE L1 -2262 3884 3195 5 1132 419 276 27 60 chr9 71773388 71773512 -52302660 - L1M4 LINE L1 -2935 3211 3093 5 1132 491 275 108 54 chr9 71773512 71773716 -52302456 - B3 SINE B2 0 216 2 5 1132 419 279 37 66 chr9 71773716 71773798 -52302374 - L1M4 LINE L1 -3054 3092 3009 5 1132 1100 115 40 0 chr9 71774735 71774909 -52301263 + B2_Mm1t SINE B2 1 181 -12 5 1132 180 0 0 0 chr9 71774909 71774929 -52301243 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1132 909 244 21 5 chr9 71774929 71775123 -52301049 - B3 SINE B2 -11 205 9 5 1132 189 0 0 0 chr9 71775133 71775154 -52301018 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1132 346 338 55 27 chr9 71775235 71775381 -52300791 - RSINE1 SINE B4 -14 151 2 5 1132 315 0 0 0 chr9 71777753 71777788 -52298384 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1132 294 98 0 0 chr9 71777893 71777944 -52298228 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1132 1048 76 21 0 chr9 71777944 71778088 -52298084 - B1_Mus1 SINE Alu 0 148 2 6 1132 513 277 0 8 chr9 71778405 71778525 -52297647 + PB1D7 SINE Alu 2 120 0 6 1132 810 279 16 0 chr9 71780635 71780812 -52295360 + MTEa LTR MaLR 1 180 -199 6 1132 739 143 97 103 chr9 71780812 71781007 -52295165 + B2_Mm2 SINE B2 2 195 0 6 1132 887 202 72 0 chr9 71781001 71781194 -52294978 + MTEa LTR MaLR 169 375 -4 6 1132 199 333 60 15 chr9 71781892 71781959 -52294213 + MIRc SINE MIR 64 133 -135 6 1132 239 354 75 72 chr9 71782221 71782486 -52293686 + RMER15 LTR ERVL 303 568 -7 6 1132 200 170 18 54 chr9 71782660 71782716 -52293456 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 6 1132 271 273 0 0 chr9 71782734 71782789 -52293383 - RSINE1 SINE B4 -53 112 58 6 1132 228 35 0 0 chr9 71782912 71782941 -52293231 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1132 677 345 45 45 chr9 71782991 71783282 -52292890 - B4A SINE B4 -1 291 1 6 1132 1152 234 138 3 chr9 71783502 71783798 -52292374 - ORR1D2 LTR MaLR 0 370 35 6 1132 38 22 0 0 chr9 71783925 71783970 -52292202 + AT_rich Low_complexity Low_complexity 1 45 0 6 1132 253 311 104 82 chr9 71784174 71784454 -52291718 + LTR37A LTR ERV1 34 319 -107 6 1132 312 126 31 15 chr9 71784485 71784583 -52291589 - B2_Mm2 SINE B2 -6 189 47 6 1132 670 94 402 0 chr9 71784650 71784777 -52291395 - B2_Mm1t SINE B2 -15 178 1 6 1132 666 277 25 74 chr9 71784822 71785025 -52291147 - B3A SINE B2 0 198 6 6 1132 285 316 77 0 chr9 71785038 71785155 -52291017 - B1F1 SINE Alu 0 149 24 6 1132 27 0 0 0 chr9 71785194 71785221 -52290951 + AT_rich Low_complexity Low_complexity 1 27 0 6 1132 24 67 0 0 chr9 71786034 71786079 -52290093 + AT_rich Low_complexity Low_complexity 1 45 0 6 1132 604 213 60 85 chr9 71786406 71786606 -52289566 + B3A SINE B2 1 195 -3 6 1132 249 249 12 61 chr9 71786853 71786958 -52289214 - L1M5 LINE L1 -1326 4820 4722 6 1132 505 261 40 25 chr9 71786983 71787005 -52289167 - ID_B1 SINE B4 -43 249 149 6 1132 794 167 22 0 chr9 71787005 71787143 -52289029 - B1_Mus1 SINE Alu 0 148 8 6 1132 505 261 40 25 chr9 71787143 71787158 -52289014 - ID_B1 SINE B4 -43 148 68 6 1132 920 122 67 44 chr9 71787194 71787374 -52288798 - B2_Mm2 SINE B2 -10 185 2 6 1132 572 312 32 13 chr9 71787425 71787581 -52288591 - RSINE1 SINE B4 0 165 7 6 1132 323 288 55 14 chr9 71787584 71787758 -52288414 - L1M5 LINE L1 -1478 4668 4489 6 1132 290 307 134 19 chr9 71787963 71788172 -52288000 - L1M5 LINE L1 -3284 2862 2630 6 1132 292 218 257 10 chr9 71788264 71788410 -52287762 - B3 SINE B2 -3 213 16 6 1132 1311 273 85 71 chr9 71790127 71790564 -52285608 - Tigger7 DNA MER2_type -2023 468 26 6 1132 1230 97 6 0 chr9 71790593 71790768 -52285404 + B2_Mm2 SINE B2 1 176 -19 6 1132 186 133 0 0 chr9 71790844 71790874 -52285298 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1132 271 282 4 68 chr9 71790908 71791022 -52285150 - PB1D7 SINE Alu -13 104 1 6 1132 22 0 0 0 chr9 71791200 71791222 -52284950 + AT_rich Low_complexity Low_complexity 1 22 0 6 1132 632 233 172 61 chr9 71792661 71792922 -52283250 - B4A SINE B4 0 292 3 6 1132 926 214 75 0 chr9 71792977 71793178 -52282994 - B3 SINE B2 0 216 1 6 1132 285 51 0 0 chr9 71793770 71793809 -52282363 + (CAAT)n Simple_repeat Simple_repeat 1 39 0 6 1132 358 304 0 56 chr9 71793815 71793923 -52282249 - PB1D10 SINE Alu -7 110 9 6 1132 218 228 0 66 chr9 71793978 71794039 -52282133 - PB1D9 SINE Alu -26 94 38 6 1132 231 173 115 0 chr9 71793994 71794046 -52282126 - MT2B LTR ERVL -356 245 188 6 1132 1308 77 33 11 chr9 71794273 71794456 -52281716 + B2_Mm1t SINE B2 1 187 -6 6 1132 298 346 19 28 chr9 71795060 71795167 -52281005 + RSINE1 SINE B4 58 163 -2 6 1132 28 29 0 0 chr9 71795167 71795202 -52280970 + AT_rich Low_complexity Low_complexity 1 35 0 6 1132 304 301 43 34 chr9 71795382 71795433 -52280739 + B4 SINE B4 34 85 -207 6 1132 248 271 81 36 chr9 71795433 71795544 -52280628 + B1_Mur2 SINE Alu 1 116 -33 6 1132 257 167 21 0 chr9 71795573 71795621 -52280551 - MTEb LTR MaLR -15 364 316 6 1132 1139 57 0 0 chr9 71796502 71796642 -52279530 + B1_Mus2 SINE Alu 2 141 -6 6 1132 210 37 0 0 chr9 71796645 71796672 -52279500 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1132 227 171 0 0 chr9 71797608 71797649 -52278523 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1132 1098 142 46 32 chr9 71798453 71798671 -52277501 + Lx4A LINE L1 6837 7057 -1 6 1132 27 29 0 0 chr9 71799667 71799701 -52276471 + AT_rich Low_complexity Low_complexity 1 34 0 6 1132 206 247 90 13 chr9 71800471 71800549 -52275623 + MIRc SINE MIR 55 138 -130 6 1132 563 202 18 0 chr9 71800835 71800944 -52275228 + B3 SINE B2 1 111 -105 6 1132 413 267 10 10 chr9 71801454 71801556 -52274616 + B3A SINE B2 2 103 -95 6 1132 351 0 0 0 chr9 71801557 71801596 -52274576 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1132 328 286 36 0 chr9 71801596 71801680 -52274492 + B1F2 SINE Alu 7 93 -56 6 1132 702 179 42 28 chr9 71802381 71802525 -52273647 - B1_Mur1 SINE Alu -1 148 3 6 1132 486 277 34 41 chr9 71803185 71803332 -52272840 - B1F SINE Alu -1 148 3 6 1132 794 171 50 0 chr9 71803655 71803795 -52272377 + B1_Mur2 SINE Alu 1 147 -2 6 1132 207 170 0 36 chr9 71803799 71803854 -52272318 + A-rich Low_complexity Low_complexity 4 56 0 6 1132 902 223 170 107 chr9 71803854 71804171 -52272001 - MTE2b LTR MaLR -41 338 2 6 1132 294 87 0 0 chr9 71804681 71804727 -52271445 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1132 250 232 42 42 chr9 71804746 71804818 -52271354 + MurSatRep1 Unknown Unknown 200 271 -1866 6 1132 282 227 139 25 chr9 71805162 71805284 -52270888 - L1MEc LINE L1 -5608 792 657 6 1132 345 47 0 0 chr9 71806036 71806079 -52270093 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1132 667 253 25 31 chr9 71806142 71806301 -52269871 + B3A SINE B2 4 161 -37 6 1132 322 303 425 4 chr9 71806454 71806596 -52269576 - B4A SINE B4 -90 202 2 6 1132 24 53 0 0 chr9 71808082 71808120 -52268052 + AT_rich Low_complexity Low_complexity 1 38 0 6 1132 276 279 29 0 chr9 71808580 71808648 -52267524 + PB1D10 SINE Alu 14 83 -34 6 1132 324 0 0 0 chr9 71808732 71808768 -52267404 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1132 252 86 0 0 chr9 71809084 71809119 -52267053 + (ATGGTG)n Simple_repeat Simple_repeat 1 35 0 6 1132 336 48 0 0 chr9 71809123 71809165 -52267007 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1132 668 322 55 55 chr9 71809177 71809430 -52266742 - B4A SINE B4 -14 278 26 6 1132 515 289 125 25 chr9 71810172 71810578 -52265594 - L1MC4 LINE L1 -1118 6924 6457 6 1132 488 285 87 27 chr9 71810607 71810791 -52265381 - B4A SINE B4 -97 195 1 6 1132 250 175 31 16 chr9 71810841 71810905 -52265267 + A-rich Low_complexity Low_complexity 3 67 0 6 1132 192 200 0 0 chr9 71811346 71811381 -52264791 + MIR SINE MIR 114 148 -60 6 1132 189 228 50 50 chr9 71811567 71811627 -52264545 + L2c LINE L2 3326 3385 -2 6 1132 553 268 170 15 chr9 71812421 71812686 -52263486 - MLT1A0 LTR MaLR -55 310 5 6 1132 37937 30 1 0 chr9 71812823 71820037 -52256135 - L1Md_T LINE L1 0 6585 1 6 1132 288 267 0 0 chr9 71821347 71821407 -52254765 + B1F1 SINE Alu 1 60 -89 6 1132 228 100 0 0 chr9 71823785 71823825 -52252347 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1132 270 292 28 0 chr9 71824960 71825032 -52251140 - Tigger14a DNA MER2_type -172 152 79 6 1132 600 237 102 10 chr9 71825533 71825729 -52250443 - Tigger5 DNA MER2_type -1 2405 2192 6 1132 235 310 137 20 chr9 71826757 71826859 -52249313 + MIRb SINE MIR 34 147 -121 6 1132 1795 95 23 4 chr9 71826866 71827131 -52249041 + Lx3A LINE L1 6709 6978 -3 6 1132 23 0 0 0 chr9 71827224 71827247 -52248925 + AT_rich Low_complexity Low_complexity 1 23 0 6 141 2966 83 0 20 chr9 71827391 71827797 -52248375 - L1_Mus2 LINE L1 -1 6565 6168 6 1133 376 296 41 0 chr9 71828709 71828856 -52247316 + L1MB7 LINE L1 5326 5478 -696 6 1133 323 290 69 10 chr9 71829176 71829277 -52246895 - PB1 SINE Alu -3 124 18 6 1133 772 260 211 5 chr9 71829487 71829930 -52246242 + L1MB7 LINE L1 5643 6177 -7 6 1133 316 287 18 27 chr9 71830557 71830668 -52245504 + PB1D7 SINE Alu 2 111 -9 6 1133 868 306 4 35 chr9 71831796 71832026 -52244146 - ID_B1 SINE B4 0 224 2 6 1133 1016 82 7 33 chr9 71832121 71832272 -52243900 + B1_Mm SINE Alu 1 147 0 6 1133 298 274 14 0 chr9 71833803 71833876 -52242296 + ID4 SINE ID 7 80 -3 6 1133 630 190 239 6 chr9 71833899 71834058 -52242114 - ORR1C2 LTR MaLR 0 384 189 6 1133 1168 92 52 0 chr9 71834364 71834538 -52241634 + L1VL2 LINE L1 427 609 -5726 6 1133 6365 103 35 2 chr9 71834533 71835945 -52240227 + L1VL4 LINE L1 1 1399 -2160 6 1133 195 219 78 89 chr9 71836015 71836105 -52240067 + MIR SINE MIR 66 154 -108 6 1133 656 276 72 157 chr9 71836758 71837243 -52238929 - MER44B DNA MER2_type -77 473 30 6 1133 446 93 324 36 chr9 71837839 71837950 -52238222 + B2_Mm2 SINE B2 47 189 -6 6 1133 663 275 7 0 chr9 71838685 71838827 -52237345 - B1_Mur1 SINE Alu 0 149 7 6 1133 828 208 75 35 chr9 71842662 71842861 -52233311 - B3 SINE B2 -9 207 1 7 1133 234 0 0 0 chr9 71844113 71844139 -52232033 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1133 273 195 56 135 chr9 71844458 71844547 -52231625 + RLTR25B LTR ERVK 428 509 -519 7 1133 793 21 0 0 chr9 71844489 71844584 -52231588 + B1_Mm SINE Alu 47 141 -6 7 1133 1307 72 0 6 chr9 71844585 71844766 -52231406 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1133 923 125 0 28 chr9 71844766 71844947 -52231225 + GA-rich Low_complexity Low_complexity 1 176 0 7 1133 461 241 196 14 chr9 71844978 71845121 -52231051 - B3 SINE B2 -47 169 1 7 1133 1419 64 27 0 chr9 71845517 71845705 -52230467 + B2_Mm1t SINE B2 1 193 0 7 1133 297 75 0 0 chr9 71846667 71846707 -52229465 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 7 1133 21 36 0 0 chr9 71846920 71846948 -52229224 + AT_rich Low_complexity Low_complexity 1 28 0 7 1133 437 266 105 0 chr9 71848436 71848560 -52227612 + RSINE1 SINE B4 28 164 -1 7 1133 553 122 80 20 chr9 71850070 71850170 -52226002 - B1_Mur3 SINE Alu 0 149 44 7 1133 806 301 58 46 chr9 71850567 71850828 -52225344 + B4A SINE B4 1 264 -28 7 1133 313 276 194 0 chr9 71851328 71851462 -52224710 + L1M5 LINE L1 4331 4490 -1656 7 1133 769 291 43 17 chr9 71851544 71851845 -52224327 + Lx9 LINE L1 7021 7329 -315 7 1133 401 261 102 0 chr9 71853279 71853367 -52222805 + RSINE1 SINE B4 1 97 -68 7 1133 422 266 160 8 chr9 71855708 71855833 -52220339 + ID_B1 SINE B4 81 224 0 7 1133 22 0 0 0 chr9 71855833 71855855 -52220317 + AT_rich Low_complexity Low_complexity 1 22 0 7 1133 663 302 6 30 chr9 71855912 71856079 -52220093 - B3A SINE B2 -35 163 1 7 1133 278 247 0 161 chr9 71856103 71856134 -52220038 + ID4_ SINE ID 3 26 -57 7 1133 1171 29 0 0 chr9 71856134 71856270 -52219902 + B1_Mus1 SINE Alu 2 137 -11 7 1133 277 42 0 41 chr9 71856270 71856319 -52219853 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1133 278 247 0 161 chr9 71856319 71856373 -52219799 + ID4_ SINE ID 27 74 -9 7 1133 279 200 26 39 chr9 71857539 71857617 -52218555 + CT-rich Low_complexity Low_complexity 2 78 0 7 1133 576 307 33 27 chr9 71857619 71857803 -52218369 - ID_B1 SINE B4 -32 192 8 7 1133 249 57 0 0 chr9 71858282 71858317 -52217855 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1133 183 235 0 0 chr9 71858508 71858559 -52217613 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 7 1133 23 0 0 0 chr9 71858825 71858848 -52217324 + AT_rich Low_complexity Low_complexity 1 23 0 7 1133 1022 178 154 29 chr9 71859116 71859422 -52216750 - Lx9 LINE L1 0 7644 7301 7 1133 413 287 93 22 chr9 71859778 71859917 -52216255 - MIR SINE MIR -72 190 42 7 1133 197 33 33 0 chr9 71860109 71860139 -52216033 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 1133 356 82 0 0 chr9 71860139 71860188 -52215984 - B1_Mm SINE Alu -9 138 90 7 1133 5286 99 47 29 chr9 71860453 71861276 -52214896 + Lx LINE L1 5814 6651 -3 7 1133 243 0 0 0 chr9 71861314 71861341 -52214831 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1133 562 375 51 18 chr9 71862444 71862775 -52213397 + ORR1E LTR MaLR 3 344 -15 7 1133 275 280 24 78 chr9 71864489 71864561 -52211611 - RMER17A LTR ERVK -263 488 421 7 1133 778 145 58 7 chr9 71864561 71864700 -52211472 + B1_Mus2 SINE Alu 2 147 0 7 1133 275 280 24 78 chr9 71864700 71864832 -52211340 - RMER17A LTR ERVK -331 420 295 7 1133 277 270 212 12 chr9 71864842 71864922 -52211250 + Tigger7 DNA MER2_type 2294 2384 -107 7 1133 306 50 0 0 chr9 71864922 71864962 -52211210 + (CATA)n Simple_repeat Simple_repeat 1 40 0 7 1133 277 270 212 12 chr9 71864962 71865046 -52211126 + Tigger7 DNA MER2_type 2385 2490 -1 7 1133 1195 111 50 0 chr9 71866163 71866343 -52209829 + B2_Mm2 SINE B2 2 190 -5 7 1133 411 21 0 0 chr9 71866473 71866521 -52209651 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1133 5404 66 13 6 chr9 71866620 71867324 -52208848 - L1_Mus1 LINE L1 0 6567 5859 7 1133 295 239 17 0 chr9 71867391 71867461 -52208711 - B1F1 SINE Alu -74 75 2 7 1133 21 0 0 0 chr9 71867465 71867486 -52208686 + AT_rich Low_complexity Low_complexity 1 21 0 7 1133 1019 224 184 7 chr9 71867494 71867799 -52208373 - ORR1D2 LTR MaLR 0 370 12 7 1133 481 281 50 0 chr9 71867911 71868032 -52208140 + B1_Mus2 SINE Alu 1 127 -20 7 1133 391 290 83 83 chr9 71869403 71869644 -52206528 + L1MEf LINE L1 397 637 -5457 7 1133 758 303 150 39 chr9 71869814 71870720 -52205452 + L1MEf LINE L1 903 1909 -4291 7 1133 467 184 9 52 chr9 71871606 71871721 -52204451 - PB1D9 SINE Alu -2 118 9 7 1133 477 316 71 24 chr9 71871764 71871975 -52204197 - MER58A DNA MER1_type 0 224 4 7 1133 272 102 20 0 chr9 71872019 71872068 -52204104 + (TCC)n Simple_repeat Simple_repeat 1 50 0 7 1133 27 49 0 0 chr9 71872220 71872261 -52203911 + AT_rich Low_complexity Low_complexity 1 41 0 7 1133 733 247 0 0 chr9 71872262 71872412 -52203760 - RSINE1 SINE B4 -14 151 2 7 1133 543 256 15 23 chr9 71874179 71874311 -52201861 + B1_Mur2 SINE Alu 11 141 -8 7 1133 391 263 38 71 chr9 71874879 71875063 -52201109 + B3A SINE B2 3 180 -18 7 1133 252 188 62 0 chr9 71875157 71875221 -52200951 + L1M2 LINE L1 5672 5739 -558 7 1133 386 305 50 25 chr9 71875364 71875566 -52200606 + L1MB1 LINE L1 5817 6023 -145 7 1133 233 250 15 15 chr9 71875673 71875738 -52200434 + RMER4A LTR ERVK 25 89 -377 7 1133 21 0 0 0 chr9 71876310 71876331 -52199841 + AT_rich Low_complexity Low_complexity 1 21 0 7 1133 318 354 77 10 chr9 71876570 71876764 -52199408 + L1MEb LINE L1 1200 1406 -5590 7 1133 250 313 173 14 chr9 71877398 71877618 -52198554 + L1MEb LINE L1 1952 2206 -5128 7 1133 734 297 0 32 chr9 71878058 71878247 -52197925 + B3A SINE B2 21 196 -20 7 1133 586 248 36 0 chr9 71878248 71878385 -52197787 - B1_Mur3 SINE Alu -6 143 2 7 1133 340 250 21 11 chr9 71878403 71878496 -52197676 + L1M2 LINE L1 5523 5616 -696 7 1133 303 302 48 41 chr9 71878500 71878645 -52197527 + B4A SINE B4 6 151 -141 7 1133 1378 265 69 31 chr9 71878752 71879305 -52196867 + L1MB1 LINE L1 5595 6168 0 7 1133 326 240 10 0 chr9 71880956 71881048 -52195124 + (TA)n Simple_repeat Simple_repeat 2 94 0 7 1133 369 0 0 0 chr9 71881048 71881089 -52195083 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1133 326 240 10 0 chr9 71881089 71881096 -52195076 + (TA)n Simple_repeat Simple_repeat 1 7 0 7 1133 752 178 22 15 chr9 71881786 71881923 -52194249 - B1_Mur2 SINE Alu -11 138 1 7 1133 1695 126 88 10 chr9 71882448 71882745 -52193427 + ORR1A4 LTR MaLR 2 321 -8 7 1133 216 0 0 0 chr9 71882799 71882823 -52193349 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1133 32 43 0 0 chr9 71884365 71884411 -52191761 + AT_rich Low_complexity Low_complexity 1 46 0 7 1133 250 299 15 0 chr9 71885288 71885355 -52190817 - PB1D10 SINE Alu -49 68 1 7 1133 315 295 0 37 chr9 71885809 71885890 -52190282 + ID4_ SINE ID 2 79 -4 7 1133 240 290 107 27 chr9 71885899 71886048 -52190124 + L1M4 LINE L1 5274 5434 -750 7 1133 927 38 0 15 chr9 71887108 71887243 -52188929 - L1Md_F2 LINE L1 -1 6581 6449 7 1133 228 266 106 57 chr9 71887699 71887926 -52188246 - L1MD2 LINE L1 -5148 1399 1162 7 1133 375 270 82 124 chr9 71888053 71888286 -52187886 - L1MD2 LINE L1 -5529 1018 796 7 1133 3460 173 22 11 chr9 71888465 71889092 -52187080 + Lx5 LINE L1 6183 6816 -234 7 1133 27 29 0 0 chr9 71889504 71889538 -52186634 + AT_rich Low_complexity Low_complexity 1 34 0 7 1133 226 269 36 71 chr9 71889837 71889866 -52186306 - ID4 SINE ID -54 98 35 7 1133 231 234 0 41 chr9 71889866 71889915 -52186257 - ID SINE ID -153 71 25 7 1133 301 313 176 5 chr9 71889981 71890180 -52185992 + L1MC LINE L1 4990 5222 -924 7 1133 324 316 127 18 chr9 71890252 71890536 -52185636 + L1ME2 LINE L1 5337 5651 -589 7 1133 911 138 34 20 chr9 71890575 71890723 -52185449 + B1_Mur4 SINE Alu 1 150 0 7 1133 478 277 100 52 chr9 71890821 71891110 -52185062 + L1ME2 LINE L1 5751 6053 -126 7 1133 722 306 81 24 chr9 71891424 71891750 -52184422 + ORR1E LTR MaLR 2 359 0 7 1133 551 298 59 25 chr9 71892676 71892879 -52183293 + B4A SINE B4 1 210 -82 7 1133 788 199 7 33 chr9 71892884 71893035 -52183137 + B1_Mur1 SINE Alu 3 149 0 7 1133 248 311 116 22 chr9 71893057 71893195 -52182977 - Tigger13a DNA MER2_type -561 210 60 7 1133 1043 149 123 10 chr9 71893674 71893877 -52182295 - URR1A DNA MER1_type 0 226 1 7 1133 237 65 0 0 chr9 71894887 71894918 -52181254 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1133 406 217 120 0 chr9 71895462 71895554 -52180618 - B1_Mus1 SINE Alu -45 103 1 7 1133 230 292 44 11 chr9 71895637 71895727 -52180445 - LTR40b LTR ERVL 0 462 370 7 1133 499 287 72 28 chr9 71895880 71896069 -52180103 - LTR40b LTR ERVL -285 234 6 7 1133 307 335 116 0 chr9 71896162 71896326 -52179846 - HERVL40-int LTR ERVL -62 5468 5286 7 1133 414 340 92 38 chr9 71897336 71897706 -52178466 - HERVL40-int LTR ERVL -1417 4113 3724 7 1133 346 259 123 24 chr9 71897878 71898048 -52178124 + Charlie2b DNA MER1_type 2531 2717 -65 7 1133 21 0 0 0 chr9 71898377 71898398 -52177774 + AT_rich Low_complexity Low_complexity 1 21 0 7 1133 366 275 0 0 chr9 71898404 71898473 -52177699 - 5S rRNA rRNA -52 69 1 7 1133 529 327 88 30 chr9 71898664 71899138 -52177034 - L1MD2 LINE L1 -2970 3574 3063 7 1133 1883 137 12 61 chr9 71899138 71899481 -52176691 - ORR1A3 LTR MaLR 0 326 1 7 1133 529 327 88 30 chr9 71899481 71899684 -52176488 - L1MD2 LINE L1 -3482 3062 2857 7 1133 244 289 26 0 chr9 71899741 71899817 -52176355 - L1MD2 LINE L1 -3858 2686 2609 7 1133 203 0 0 36 chr9 71899845 71899873 -52176299 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1133 994 104 0 0 chr9 71899876 71900011 -52176161 - B1_Mus1 SINE Alu -13 135 1 7 1133 335 299 195 0 chr9 71900050 71900214 -52175958 - L1MD2 LINE L1 -4102 2538 2343 7 1133 435 284 216 43 chr9 71900328 71901031 -52175141 - L1MD2 LINE L1 -4562 2078 1254 7 1133 722 246 48 21 chr9 71901461 71901648 -52174524 - L1MD2 LINE L1 -6282 265 74 7 1133 806 261 5 31 chr9 71902085 71902279 -52173893 + B3 SINE B2 22 210 -6 7 1133 599 289 0 51 chr9 71902554 71902711 -52173461 + RSINE1 SINE B4 12 160 -5 7 1133 252 0 0 0 chr9 71902711 71902739 -52173433 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 8 1133 927 169 215 0 chr9 71902786 71902958 -52173214 - B3 SINE B2 -7 209 1 8 1133 782 266 31 16 chr9 71903355 71903546 -52172626 + B3 SINE B2 13 206 -10 8 1133 732 161 0 61 chr9 71904202 71904334 -52171838 + B1_Mur3 SINE Alu 1 124 -25 8 1133 446 269 84 14 chr9 71904353 71904496 -52171676 + RSINE1 SINE B4 1 153 -12 8 1133 876 189 47 12 chr9 71905695 71905866 -52170306 + B3 SINE B2 40 216 0 8 1133 826 296 48 13 chr9 71906373 71906602 -52169570 + B4A SINE B4 1 237 -55 8 1133 194 0 39 0 chr9 71906993 71907019 -52169153 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 8 1133 1418 176 61 98 chr9 71907084 71907494 -52168678 + RMER10B LTR ERVL 4 398 0 8 1133 299 278 82 0 chr9 71907541 71907638 -52168534 + PB1D10 SINE Alu 9 113 -4 8 1133 672 230 7 21 chr9 71907756 71907898 -52168274 + B1_Mus2 SINE Alu 7 146 -1 8 1133 282 231 21 42 chr9 71908313 71908408 -52167764 + GA-rich Low_complexity Low_complexity 4 96 0 8 1133 22 35 0 0 chr9 71908572 71908601 -52167571 + AT_rich Low_complexity Low_complexity 1 29 0 8 1133 486 33 0 0 chr9 71909994 71910054 -52166118 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1133 280 388 47 7 chr9 71911105 71911253 -52164919 + RSINE1 SINE B4 12 165 0 8 1133 317 167 13 0 chr9 71911258 71911336 -52164836 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1133 421 353 12 0 chr9 71911571 71911744 -52164428 + AmnSINE1 SINE SINE 236 410 -165 8 1133 309 277 74 11 chr9 71912306 71912401 -52163771 + PB1D10 SINE Alu 12 112 -5 8 1133 1022 92 43 0 chr9 71912420 71912561 -52163611 + B1_Mm SINE Alu 1 147 0 8 1133 312 247 0 11 chr9 71912596 71912686 -52163486 + MER46C DNA MER2_type 80 168 -170 8 1133 246 340 46 30 chr9 71912669 71912866 -52163306 + MER46C DNA MER2_type 122 321 -17 8 1133 334 339 42 0 chr9 71914419 71914537 -52161635 - B1_Mur1 SINE Alu -1 148 26 8 1133 646 244 139 16 chr9 71914431 71914618 -52161554 - ID_B1 SINE B4 -13 211 2 8 1133 195 42 0 0 chr9 71914753 71914777 -52161395 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 8 1133 1160 62 0 0 chr9 71914821 71914966 -52161206 - B1_Mm SINE Alu -1 146 2 8 1133 735 198 220 6 chr9 71915105 71915278 -52160894 + B3 SINE B2 1 210 -6 8 1133 1184 98 17 6 chr9 71915299 71915474 -52160698 + B2_Mm2 SINE B2 12 188 -7 8 1133 386 228 42 34 chr9 71915502 71915620 -52160552 + PB1D9 SINE Alu 1 119 -1 8 1133 449 247 90 24 chr9 71915820 71916002 -52160170 - MLT1A1 LTR MaLR 0 408 162 8 1133 247 196 20 0 chr9 71916102 71916153 -52160019 + (TATG)n Simple_repeat Simple_repeat 3 54 0 8 1133 264 220 0 48 chr9 71916155 71916217 -52159955 - RLTR22_Mur LTR ERVK -500 1348 1290 8 1133 832 68 25 17 chr9 71916255 71916375 -52159797 - B1_Mus1 SINE Alu 0 148 28 8 1133 2028 149 43 0 chr9 71916479 71916808 -52159364 + ORR1C1 LTR MaLR 36 378 0 8 1133 333 282 0 0 chr9 71916814 71916885 -52159287 - ID4_ SINE ID -9 74 4 8 1133 189 0 0 0 chr9 71917411 71917432 -52158740 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 8 1133 912 300 69 0 chr9 71918022 71918255 -52157917 + B4A SINE B4 2 250 -42 8 1133 28 79 0 0 chr9 71918394 71918457 -52157715 + AT_rich Low_complexity Low_complexity 1 63 0 8 1133 456 324 22 0 chr9 71918614 71918750 -52157422 - ID_B1 SINE B4 -7 217 79 8 1133 473 273 103 11 chr9 71918891 71919076 -52157096 - L1MA8 LINE L1 -268 6023 5822 8 1133 22 0 0 54 chr9 71919121 71919142 -52157030 + AT_rich Low_complexity Low_complexity 1 20 0 8 1133 1187 48 0 0 chr9 71919142 71919288 -52156884 + B1_Mm SINE Alu 2 147 0 8 1133 22 0 0 54 chr9 71919288 71919303 -52156869 + AT_rich Low_complexity Low_complexity 1 15 0 8 1133 375 346 20 0 chr9 71919314 71919415 -52156757 + PB1D10 SINE Alu 2 104 -13 8 1133 621 241 117 5 chr9 71919691 71919879 -52156293 - B3 SINE B2 -6 210 2 8 1133 21 57 0 0 chr9 71920135 71920170 -52156002 + AT_rich Low_complexity Low_complexity 1 35 0 8 1133 495 0 0 0 chr9 71920407 71920462 -52155710 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 8 1133 597 213 8 52 chr9 71920493 71920627 -52155545 + B4 SINE B4 163 290 -2 8 1133 529 296 131 44 chr9 71921018 71921339 -52154833 + ORR1E LTR MaLR 11 359 0 8 1133 441 79 18 5 chr9 71921380 71921462 -52154710 + L1Md_F2 LINE L1 5525 5615 -697 8 1133 7793 53 10 2 chr9 71921462 71922438 -52153734 + L1Md_F2 LINE L1 5587 6570 -12 8 1133 274 325 24 0 chr9 71922473 71922556 -52153616 + B4A SINE B4 84 168 -124 8 1133 580 189 38 0 chr9 71922484 71922590 -52153582 + PB1D9 SINE Alu 11 120 0 8 1133 276 130 0 0 chr9 71923704 71923750 -52152422 + (CTTA)n Simple_repeat Simple_repeat 2 47 0 8 1133 366 319 0 17 chr9 71924905 71925023 -52151149 + G-rich Low_complexity Low_complexity 1 116 0 8 1133 21 0 0 0 chr9 71925048 71925069 -52151103 + AT_rich Low_complexity Low_complexity 1 21 0 8 1133 421 231 182 17 chr9 71925384 71925560 -52150612 - MER3 DNA MER1_type -4 205 1 8 1133 25 0 0 0 chr9 71925624 71925649 -52150523 + AT_rich Low_complexity Low_complexity 1 25 0 8 1133 278 328 29 51 chr9 71926081 71926219 -52149953 + MER5A DNA MER1_type 1 135 -54 8 1133 1085 43 0 0 chr9 71926496 71926634 -52149538 - B2_Mm2 SINE B2 -56 139 2 8 1133 22 35 0 0 chr9 71927017 71927046 -52149126 + AT_rich Low_complexity Low_complexity 1 29 0 8 1133 481 348 59 5 chr9 71927095 71927297 -52148875 - MER58A DNA MER1_type 0 224 12 8 1133 326 215 19 151 chr9 71927587 71927746 -52148426 + MLT1C LTR MaLR 35 172 -295 8 1133 376 299 37 68 chr9 71928043 71928337 -52147835 - L1MC5 LINE L1 -826 7135 6851 8 1133 757 180 103 40 chr9 71928420 71928594 -52147578 + B2_Mm2 SINE B2 2 186 -9 8 1133 1362 80 5 16 chr9 71928736 71928926 -52147246 - B2_Mm2 SINE B2 -7 188 1 8 1133 231 61 0 0 chr9 71928931 71928964 -52147208 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1133 390 260 29 29 chr9 71929120 71929223 -52146949 + PB1D10 SINE Alu 2 104 -13 8 1133 248 315 0 0 chr9 71929599 71929672 -52146500 + ID4_ SINE ID 2 74 -9 8 1133 260 228 75 75 chr9 71929976 71930109 -52146063 - ORR1E LTR MaLR -6 373 241 8 1133 384 293 33 20 chr9 71930143 71930293 -52145879 - ORR1E LTR MaLR -202 157 6 8 1133 232 96 58 0 chr9 71930582 71930634 -52145538 + (CATA)n Simple_repeat Simple_repeat 1 55 0 8 1133 319 256 0 13 chr9 71930861 71930940 -52145232 + MER105 DNA DNA 46 123 -81 8 1133 23 0 0 0 chr9 71931243 71931266 -52144906 + AT_rich Low_complexity Low_complexity 1 23 0 8 1133 850 228 18 28 chr9 71931274 71931491 -52144681 + B3 SINE B2 2 216 0 8 1133 243 79 0 0 chr9 71932546 71932584 -52143588 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1133 417 246 119 0 chr9 71932682 71932808 -52143364 + B1F SINE Alu 1 141 -8 8 1133 1628 147 134 66 chr9 71932820 71933185 -52142987 + ORR1B1 LTR MaLR 5 394 0 8 1133 235 65 21 21 chr9 71934291 71934338 -52141834 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 1133 968 217 15 20 chr9 71934711 71934913 -52141259 + B3 SINE B2 2 202 -14 8 1133 244 148 0 18 chr9 71934913 71934968 -52141204 + B3 SINE B2 163 216 0 8 1133 1075 62 14 0 chr9 71935086 71935231 -52140941 + B1_Mus1 SINE Alu 1 147 -1 8 1133 29 0 0 0 chr9 71935231 71935260 -52140912 + AT_rich Low_complexity Low_complexity 1 29 0 8 1133 655 247 152 20 chr9 71935660 71935858 -52140314 + ID_B1 SINE B4 1 224 0 8 1133 406 356 146 46 chr9 71936562 71937127 -52139045 + L1MEc LINE L1 31 672 -5730 8 1133 1368 154 5 5 chr9 71937127 71937349 -52138823 - URR1B DNA MER1_type -2 223 2 8 1133 406 356 146 46 chr9 71937349 71937502 -52138670 + L1MEc LINE L1 673 821 -5581 8 1133 1221 48 0 0 chr9 71937745 71937892 -52138280 - B1_Mm SINE Alu 0 147 1 8 1133 321 109 0 0 chr9 71938069 71938124 -52138048 + (A)n Simple_repeat Simple_repeat 1 55 0 8 1133 207 0 0 0 chr9 71938204 71938227 -52137945 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1133 633 185 73 40 chr9 71938752 71938876 -52137296 + B1_Mus2 SINE Alu 9 136 -11 8 1133 362 287 83 91 chr9 71938924 71939177 -52136995 + L1MEc LINE L1 1398 1648 -4860 8 1133 1514 49 0 5 chr9 71939187 71939373 -52136799 + B2_Mm1t SINE B2 2 186 -7 8 1133 315 276 80 16 chr9 71939837 71939962 -52136210 + L1MEc LINE L1 3597 3729 -2592 8 1133 234 300 86 12 chr9 71940027 71940108 -52136064 + MLT1A1 LTR MaLR 73 159 -249 8 1133 428 206 245 0 chr9 71940147 71940267 -52135905 + MLT1A1 LTR MaLR 200 392 -16 8 1133 326 309 92 14 chr9 71940391 71940532 -52135640 + MLT-int LTR MaLR 147 298 -1437 8 1133 305 307 34 80 chr9 71940701 71940878 -52135294 + MLT-int LTR MaLR 988 1274 -461 8 1133 248 303 0 13 chr9 71940969 71941046 -52135126 + B4 SINE B4 2 77 -215 8 1133 338 190 26 8 chr9 71941047 71941164 -52135008 + (CA)n Simple_repeat Simple_repeat 2 120 0 8 1133 927 272 115 44 chr9 71941200 71941539 -52134633 + MLT-int LTR MaLR 1373 1735 0 8 1133 22 0 0 0 chr9 71941856 71941878 -52134294 + AT_rich Low_complexity Low_complexity 1 22 0 8 1133 705 186 192 28 chr9 71942580 71942762 -52133410 + B3 SINE B2 1 212 -4 8 1133 936 146 59 43 chr9 71942762 71942948 -52133224 + B2_Mm2 SINE B2 2 190 -5 8 1133 180 0 0 0 chr9 71943942 71943962 -52132210 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1133 796 153 321 0 chr9 71944012 71944185 -52131987 + ORR1D1 LTR MaLR 3 228 -146 8 1133 304 22 44 0 chr9 71944185 71944230 -52131942 + (CCTG)n Simple_repeat Simple_repeat 4 50 0 8 1133 738 115 129 0 chr9 71944230 71944349 -52131823 + ORR1D1 LTR MaLR 229 364 -10 8 1133 1215 39 26 0 chr9 71947419 71947573 -52128599 + L1_Mus2 LINE L1 6409 6566 0 8 1133 562 291 7 7 chr9 71947847 71947999 -52128173 - RSINE1 SINE B4 -12 153 2 8 1133 427 301 32 0 chr9 71948629 71948766 -52127406 - B1F SINE Alu 0 149 6 8 1133 24 0 0 0 chr9 71949075 71949099 -52127073 + AT_rich Low_complexity Low_complexity 1 24 0 9 1133 868 222 13 86 chr9 71949135 71949367 -52126805 + B3 SINE B2 1 215 -1 9 1133 1124 48 0 39 chr9 71949756 71949909 -52126263 + B1_Mm SINE Alu 1 147 0 9 1133 441 54 0 0 chr9 71949922 71949978 -52126194 + (GAA)n Simple_repeat Simple_repeat 2 57 0 9 1133 1069 157 68 10 chr9 71950079 71950285 -52125887 - URR1B DNA MER1_type 0 225 8 9 1133 1379 67 83 0 chr9 71950713 71950893 -52125279 + B2_Mm2 SINE B2 1 195 0 9 1133 538 202 24 56 chr9 71951089 71951215 -52124957 + B1F SINE Alu 21 142 -7 9 1133 419 296 82 27 chr9 71951301 71951485 -52124687 - MIRb SINE MIR -73 195 2 9 1133 214 349 20 26 chr9 71951841 71951994 -52124178 - MIRb SINE MIR -46 222 71 9 1133 192 339 79 68 chr9 71952865 71953055 -52123117 - MIR SINE MIR -37 225 34 9 1133 425 264 26 52 chr9 71954866 71954881 -52121291 - PB1D10 SINE Alu -2 115 104 9 1133 234 0 0 0 chr9 71954881 71954907 -52121265 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 9 1133 425 264 26 52 chr9 71954907 71955007 -52121165 - PB1D10 SINE Alu -14 103 3 9 1133 22 56 0 0 chr9 71956946 71956982 -52119190 + AT_rich Low_complexity Low_complexity 1 36 0 9 1134 648 38 0 0 chr9 71958690 71958769 -52117403 + (GA)n Simple_repeat Simple_repeat 1 79 0 9 1134 24 113 0 0 chr9 71959189 71959304 -52116868 + GC_rich Low_complexity Low_complexity 1 115 0 9 1134 180 125 0 0 chr9 71959752 71959784 -52116388 + (CGGGG)n Simple_repeat Simple_repeat 3 34 0 9 1134 2964 121 73 10 chr9 71960986 71961480 -52114692 + RLTR11A2 LTR ERVK 1 525 -2 9 1134 361 291 17 60 chr9 71962132 71962249 -52113923 + RSINE1 SINE B4 54 165 0 9 1134 2472 101 79 3 chr9 71963240 71963606 -52112566 + ORR1B1 LTR MaLR 1 394 0 9 1134 258 160 0 0 chr9 71963678 71963728 -52112444 + A-rich Low_complexity Low_complexity 1 50 0 9 1134 319 278 31 10 chr9 71963753 71963851 -52112321 - B1F2 SINE Alu -48 101 2 9 1134 369 188 0 14 chr9 71964059 71964129 -52112043 + B3 SINE B2 2 70 -146 9 1134 249 271 79 32 chr9 71964391 71964517 -52111655 + HAL1 LINE L1 822 953 -1554 9 1134 709 122 32 32 chr9 71964524 71964837 -52111335 + (TG)n Simple_repeat Simple_repeat 1 313 0 9 1134 639 190 68 27 chr9 71964963 71965109 -52111063 + B3A SINE B2 47 198 0 9 1134 853 214 68 19 chr9 71965345 71965550 -52110622 + B3 SINE B2 2 216 0 9 1134 707 218 0 0 chr9 71966103 71966236 -52109936 - B1_Mus2 SINE Alu -12 135 3 9 1134 449 292 55 82 chr9 71966260 71966480 -52109692 - B3 SINE B2 -2 214 1 9 1134 498 319 59 35 chr9 71966503 71966672 -52109500 - B4 SINE B4 -118 174 2 9 1134 576 280 26 11 chr9 71967796 71967987 -52108185 + B3A SINE B2 1 194 -4 9 1134 218 278 19 0 chr9 71968016 71968070 -52108102 + ID4 SINE ID 28 82 -1 9 1134 234 0 0 0 chr9 71968071 71968097 -52108075 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 9 1134 504 275 59 20 chr9 71968241 71968393 -52107779 - B3A SINE B2 -18 180 23 9 1134 753 240 34 17 chr9 71968819 71968997 -52107175 - B3A SINE B2 -16 182 2 9 1134 830 241 30 15 chr9 71969113 71969311 -52106861 - B3 SINE B2 0 216 16 9 1134 442 252 20 0 chr9 71969612 71969711 -52106461 - U6 snRNA snRNA 0 107 7 9 1134 959 237 55 35 chr9 71969720 71969974 -52106198 + B4 SINE B4 10 268 -24 9 1134 405 0 0 0 chr9 71969977 71970022 -52106150 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1134 350 91 0 18 chr9 71970129 71970185 -52105987 + (TTA)n Simple_repeat Simple_repeat 2 56 0 9 1134 204 188 0 0 chr9 71970190 71970222 -52105950 + (CAG)n Simple_repeat Simple_repeat 1 32 0 9 1134 461 250 85 8 chr9 71970222 71970351 -52105821 - B4 SINE B4 -75 217 79 9 1134 232 264 135 80 chr9 71971197 71971522 -52104650 - L1MB8 LINE L1 -13 6165 5823 9 1134 393 298 38 0 chr9 71971616 71971747 -52104425 + MER5A1 DNA MER1_type 1 136 -30 9 1134 631 337 89 3 chr9 71972678 71972970 -52103202 + LTR33 LTR ERVL 110 426 -89 9 1134 638 273 97 71 chr9 71973368 71973676 -52102496 + MLT1K LTR MaLR 263 578 -17 9 1134 1270 34 0 0 chr9 71974425 71974572 -52101600 + B1_Mus2 SINE Alu 1 147 0 9 1134 37 0 0 0 chr9 71974572 71974609 -52101563 + AT_rich Low_complexity Low_complexity 1 37 0 9 1134 837 171 14 7 chr9 71974622 71974769 -52101403 + B1_Mur4 SINE Alu 3 150 0 9 1134 446 120 0 13 chr9 71974770 71974846 -52101326 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 9 1134 841 258 5 23 chr9 71974858 71975076 -52101096 + B3 SINE B2 3 216 0 9 1134 583 248 98 0 chr9 71975237 71975370 -52100802 - RSINE1 SINE B4 -4 161 16 9 1134 1216 214 112 16 chr9 71975968 71976290 -52099882 - ORR1E LTR MaLR -6 353 1 9 1134 240 308 110 0 chr9 71977578 71977669 -52098503 + MLT1K LTR MaLR 427 527 -68 9 1134 257 274 69 35 chr9 71977682 71977769 -52098403 + ORR1E LTR MaLR 21 110 -249 9 1134 1219 41 0 0 chr9 71978044 71978189 -52097983 - B1_Mm SINE Alu 0 147 3 9 1134 1268 140 12 83 chr9 71978219 71978461 -52097711 + URR1A DNA MER1_type 1 225 -1 9 1134 285 261 54 11 chr9 71979189 71979201 -52096971 + B4A SINE B4 71 86 -206 9 1134 573 192 41 8 chr9 71979201 71979322 -52096850 + B1F2 SINE Alu 1 125 -24 9 1134 643 274 16 79 chr9 71979405 71979568 -52096604 + B3 SINE B2 29 180 -36 9 1134 1240 47 0 0 chr9 71979568 71979716 -52096456 - B1_Mus1 SINE Alu 0 148 1 9 1134 643 274 16 79 chr9 71979716 71979742 -52096430 + B3 SINE B2 181 206 -10 9 1134 255 365 113 26 chr9 71979892 71980238 -52095934 + L2a LINE L2 3031 3406 -20 9 1134 180 111 0 0 chr9 71980275 71980302 -52095870 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1134 201 362 43 14 chr9 71981836 71981976 -52094196 + MIRc SINE MIR 63 206 -62 9 1134 446 100 156 0 chr9 71982183 71982273 -52093899 + L1_Mus3 LINE L1 6530 6633 -5 9 1134 313 328 59 54 chr9 71982408 71982611 -52093561 + LTR88b LTR Gypsy? 1 204 -633 9 1134 522 185 227 0 chr9 71983130 71983249 -52092923 + B1_Mus2 SINE Alu 2 147 0 9 1134 182 353 0 34 chr9 71984929 71985017 -52091155 + MIRb SINE MIR 57 141 -127 9 1134 722 213 14 0 chr9 71985384 71985525 -52090647 - B1_Mur1 SINE Alu -6 143 1 9 1134 260 303 13 38 chr9 71985575 71985654 -52090518 + ID4_ SINE ID 1 77 -6 9 1134 225 0 0 0 chr9 71985725 71985750 -52090422 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 9 1134 2073 102 20 61 chr9 71985814 71986157 -52090015 + ORR1A4 LTR MaLR 1 329 0 9 1134 913 257 173 14 chr9 71986253 71986675 -52089497 + Charlie1a DNA MER1_type 325 813 -642 9 1134 827 272 27 48 chr9 71986670 71986963 -52089209 + Charlie1a DNA MER1_type 952 1238 -217 9 1134 416 260 210 22 chr9 71986998 71987269 -52088903 - L1MB2 LINE L1 -8 6163 5842 9 1134 186 43 0 0 chr9 71987282 71987305 -52088867 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9 1134 1604 280 72 14 chr9 71987730 71988230 -52087942 - Lx8 LINE L1 -359 7114 6586 9 1134 443 290 170 25 chr9 71988307 71988605 -52087567 - L1MC1 LINE L1 -318 6015 5680 9 1134 204 97 0 0 chr9 71988605 71988636 -52087536 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1134 443 290 170 25 chr9 71988636 71988701 -52087471 - L1MC1 LINE L1 -654 5679 5599 9 1134 228 253 136 11 chr9 71988737 71988825 -52087347 + B1F SINE Alu 51 149 0 9 1134 1647 256 56 77 chr9 71989060 71989445 -52086727 - L1MC1 LINE L1 -753 5393 5030 9 1134 916 223 24 19 chr9 71989445 71989651 -52086521 - B3 SINE B2 -9 207 1 9 1134 1647 256 56 77 chr9 71989651 71989913 -52086259 - L1MC1 LINE L1 -1117 5029 4760 9 1134 697 194 72 0 chr9 71989937 71990076 -52086096 + B1_Mur4 SINE Alu 2 150 0 9 1134 469 240 155 32 chr9 71990189 71990344 -52085828 - L1MC1 LINE L1 -1375 4771 4598 9 1134 323 205 11 103 chr9 71990407 71990494 -52085678 - ID4 SINE ID 0 83 5 9 1134 255 245 159 41 chr9 71990497 71990667 -52085505 - L1MC1 LINE L1 -1584 4562 4373 9 1134 804 139 38 15 chr9 71991026 71991157 -52085015 - B1_Mus1 SINE Alu -13 135 2 9 1134 207 98 73 0 chr9 71991231 71991272 -52084900 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 9 1134 227 257 58 111 chr9 71991361 71991532 -52084640 - L2a LINE L2 -66 3360 3199 9 1134 1098 83 0 0 chr9 71991615 71991759 -52084413 - B1_Mus1 SINE Alu -2 146 3 9 1134 243 196 0 35 chr9 71992239 71992297 -52083875 + CT-rich Low_complexity Low_complexity 2 57 0 9 1134 184 77 51 0 chr9 71992365 71992404 -52083768 + (TA)n Simple_repeat Simple_repeat 1 41 0 9 1134 472 239 33 41 chr9 71992674 71992796 -52083376 + ID_B1 SINE B4 104 224 0 9 1134 313 373 144 46 chr9 71992838 71993248 -52082924 - LTR41B LTR ERVL -308 450 1 9 1134 716 212 206 0 chr9 71993358 71993528 -52082644 + B3 SINE B2 2 206 -10 9 1134 287 217 17 0 chr9 71993625 71993685 -52082487 + ID4 SINE ID 1 61 -22 9 1134 290 318 24 0 chr9 71993741 71993826 -52082346 + PB1 SINE Alu 31 117 -10 9 1134 341 299 9 18 chr9 71993849 71993958 -52082214 + PB1D7 SINE Alu 5 112 -8 9 1134 39 30 0 29 chr9 71994123 71994141 -52082031 + AT_rich Low_complexity Low_complexity 1 17 0 9 1134 1184 54 14 0 chr9 71994141 71994288 -52081884 + B1_Mur4 SINE Alu 2 150 0 9 1134 39 30 0 29 chr9 71994288 71994337 -52081835 + AT_rich Low_complexity Low_complexity 1 49 0 9 1134 5515 93 19 9 chr9 71994339 71995110 -52081062 - Lx3B LINE L1 -1 6972 6194 9 1134 3561 81 77 21 chr9 71995110 71995628 -52080544 + Lx3B LINE L1 5626 6172 -801 9 1134 238 278 0 18 chr9 71995662 71995717 -52080455 - ID4 SINE ID -4 79 26 9 1134 253 222 18 18 chr9 71995668 71995723 -52080449 - ID SINE ID -150 74 20 9 1134 3632 132 120 30 chr9 71996247 71996941 -52079231 + RMER6A LTR ERVK 1 756 0 9 1134 767 219 86 72 chr9 71997254 71997475 -52078697 + ID_B1 SINE B4 1 224 0 9 1134 829 187 81 17 chr9 71997476 71997650 -52078522 + B3 SINE B2 24 208 -8 1 1134 573 112 173 101 chr9 71997802 71997941 -52078231 + B1_Mur3 SINE Alu 1 149 0 1 1134 233 261 55 33 chr9 71998006 71998097 -52078075 - L1MC4 LINE L1 -503 7539 7447 1 1134 914 319 90 35 chr9 71998709 71999284 -52076888 + Tigger6a DNA MER2_type 74 680 -403 1 1134 999 75 0 0 chr9 71999316 71999450 -52076722 + B2_Mm2 SINE B2 1 134 -61 1 1134 575 220 21 68 chr9 71999616 71999806 -52076366 + Tigger6a DNA MER2_type 775 955 -128 1 1134 546 321 12 24 chr9 71999812 71999978 -52076194 + B3A SINE B2 2 165 -33 1 1134 511 336 34 34 chr9 72000057 72000291 -52075881 + Lx8 LINE L1 7099 7332 -141 1 1134 304 243 0 0 chr9 72000307 72000381 -52075791 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1134 25 65 0 0 chr9 72000504 72000550 -52075622 + AT_rich Low_complexity Low_complexity 1 46 0 3 1134 760 241 29 6 chr9 72000568 72000743 -52075429 - B3 SINE B2 -13 203 25 4 1134 3267 185 101 47 chr9 72000750 72000906 -52075266 - RMER1A Other Other 0 1030 880 5 1134 339 25 0 0 chr9 72000906 72000946 -52075226 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1134 3267 185 101 47 chr9 72000946 72001510 -52074662 - RMER1A Other Other -151 879 271 5 1134 389 259 0 0 chr9 72001492 72001573 -52074599 - RMER1B Other Other -585 481 401 7 1134 242 183 117 0 chr9 72001614 72001674 -52074498 + Tigger6b DNA MER2_type 1469 1535 -62 8 1134 1029 72 72 0 chr9 72001675 72001813 -52074359 + B1_Mus1 SINE Alu 1 148 0 9 1134 222 156 0 0 chr9 72001814 72001859 -52074313 + A-rich Low_complexity Low_complexity 1 45 0 1 1134 270 0 0 0 chr9 72001976 72002006 -52074166 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1134 201 140 0 50 chr9 72002312 72002372 -52073800 + G-rich Low_complexity Low_complexity 2 58 0 1 1134 756 199 7 7 chr9 72002577 72002719 -52073453 + B1_Mur3 SINE Alu 2 143 -6 1 1134 216 0 0 0 chr9 72002722 72002746 -52073426 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1134 273 29 0 0 chr9 72003024 72003058 -52073114 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1134 23 0 0 0 chr9 72003890 72003913 -52072259 + GC_rich Low_complexity Low_complexity 1 23 0 1 1134 225 94 0 0 chr9 72004440 72004472 -52071700 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1 1134 367 276 8 57 chr9 72004492 72004615 -52071557 - PB1D10 SINE Alu 0 117 1 1 1134 292 334 13 2 chr9 72004795 72004902 -52071270 + MIR SINE MIR 70 181 -87 1 1134 25 31 0 0 chr9 72005206 72005238 -52070934 + AT_rich Low_complexity Low_complexity 1 32 0 2 1134 1201 99 0 6 chr9 72005240 72005413 -52070759 - B2_Mm2 SINE B2 -23 172 1 2 1134 763 159 0 13 chr9 72005426 72005579 -52070593 + CT-rich Low_complexity Low_complexity 3 153 0 2 1134 1173 75 7 0 chr9 72005580 72005726 -52070446 - B1_Mus1 SINE Alu -1 147 1 2 1134 323 23 0 22 chr9 72005967 72006012 -52070160 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 2 1134 21 36 0 0 chr9 72006226 72006254 -52069918 + AT_rich Low_complexity Low_complexity 1 28 0 2 1134 819 135 0 0 chr9 72006675 72006808 -52069364 + (TCC)n Simple_repeat Simple_repeat 3 135 0 2 1134 459 0 0 0 chr9 72007344 72007395 -52068777 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1134 365 274 30 40 chr9 72007404 72007503 -52068669 - B1F1 SINE Alu -51 98 1 2 1134 516 280 8 0 chr9 72007566 72007691 -52068481 - ID_B1 SINE B4 -29 195 70 2 1134 244 331 134 30 chr9 72008172 72008306 -52067866 + RSINE1 SINE B4 10 157 -8 3 1134 192 40 0 0 chr9 72008311 72008336 -52067836 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1134 797 249 28 19 chr9 72008633 72008846 -52067326 + ID_B1 SINE B4 2 216 -8 3 1134 21 0 0 0 chr9 72009173 72009194 -52066978 + AT_rich Low_complexity Low_complexity 1 21 0 3 1134 2652 44 3 0 chr9 72009230 72009572 -52066600 - IAPEY_LTR LTR ERVK 0 385 43 3 1134 836 221 39 0 chr9 72009573 72009754 -52066418 + B3 SINE B2 17 204 -12 3 1134 1150 48 0 46 chr9 72009766 72009918 -52066254 - B1_Mus1 SINE Alu -2 146 2 3 1134 355 335 144 31 chr9 72009958 72010318 -52065854 - L1MEc LINE L1 -1300 5019 4619 3 1134 498 197 80 80 chr9 72010363 72010395 -52065777 - B2_Mm1t SINE B2 -3 190 158 3 1134 390 42 0 0 chr9 72010395 72010443 -52065729 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1134 709 195 64 6 chr9 72010443 72010598 -52065574 - B3A SINE B2 -36 157 3 3 1134 297 0 0 0 chr9 72010614 72010647 -52065525 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 1134 524 331 89 52 chr9 72010975 72011870 -52064302 - L1MEc LINE L1 -4798 1602 675 3 1134 252 292 75 43 chr9 72011998 72012091 -52064081 - L1M5 LINE L1 -651 5793 5698 4 1134 224 384 0 0 chr9 72012401 72012500 -52063672 - L2 LINE L2 -608 2811 2713 4 1134 315 246 8 23 chr9 72012897 72013030 -52063142 + (CATATA)n Simple_repeat Simple_repeat 4 134 0 4 1134 1129 217 19 0 chr9 72013132 72013344 -52062828 - B3 SINE B2 0 216 1 4 1134 241 305 88 88 chr9 72013668 72013952 -52062220 + L1M5 LINE L1 5463 5746 -378 4 1134 855 113 0 15 chr9 72014932 72015082 -52061090 - B1_Mur3 SINE Alu -1 148 1 4 1134 1128 82 0 0 chr9 72015268 72015415 -52060757 - B1_Mus1 SINE Alu 0 148 2 4 1134 681 232 63 21 chr9 72015442 72015631 -52060541 - B3A SINE B2 -1 197 1 4 1134 312 221 61 69 chr9 72015717 72015848 -52060324 + L1MB4 LINE L1 38 167 -6440 4 1134 385 323 70 52 chr9 72015864 72016135 -52060037 + B4 SINE B4 1 276 -16 5 1134 240 282 181 72 chr9 72016306 72016627 -52059545 + L1MB4 LINE L1 207 562 -6045 4 1134 360 64 0 0 chr9 72016627 72016674 -52059498 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1134 1681 27 0 0 chr9 72016753 72016941 -52059231 + B2_Mm1t SINE B2 1 188 -5 5 1134 219 376 0 0 chr9 72017466 72017559 -52058613 + CT-rich Low_complexity Low_complexity 1 93 0 5 1134 246 308 47 0 chr9 72017826 72017933 -52058239 + L1MB4 LINE L1 750 861 -5784 4 1134 449 281 48 48 chr9 72018243 72018274 -52057898 + ID SINE ID 42 75 -149 5 1134 288 0 0 0 chr9 72018274 72018306 -52057866 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 5 1134 449 281 48 48 chr9 72018306 72018318 -52057854 + ID_B1 SINE B4 76 209 -15 5 1134 487 282 24 0 chr9 72018318 72018442 -52057730 + B1F1 SINE Alu 8 134 -15 5 1134 207 0 0 0 chr9 72018544 72018567 -52057605 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1134 665 183 7 0 chr9 72018799 72018952 -52057220 + (TG)n Simple_repeat Simple_repeat 2 155 0 5 1134 511 283 10 51 chr9 72019164 72019361 -52056811 - L1MA4 LINE L1 -414 5886 5698 5 1134 780 217 89 5 chr9 72019363 72019553 -52056619 + B3 SINE B2 6 211 -5 6 1134 827 128 16 8 chr9 72019724 72019850 -52056322 - B1_Mur2 SINE Alu -18 131 5 6 1134 954 300 115 30 chr9 72019858 72020203 -52055969 - L1MA4 LINE L1 -813 5487 5111 5 1134 1004 206 40 0 chr9 72020203 72020402 -52055770 - B3 SINE B2 -9 207 1 6 1134 954 299 148 34 chr9 72020402 72020529 -52055643 - L1MA4 LINE L1 -1030 5110 4962 5 1134 285 29 0 0 chr9 72020529 72020563 -52055609 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1134 954 299 148 34 chr9 72020563 72020879 -52055293 - L1MA4 LINE L1 -1179 4961 4612 5 1134 485 183 0 53 chr9 72020886 72021076 -52055096 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1134 264 158 0 0 chr9 72021105 72021162 -52055010 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1134 576 290 6 24 chr9 72021164 72021330 -52054842 - RSINE1 SINE B4 0 165 3 6 1134 719 255 52 129 chr9 72021342 72021474 -52054698 - L1_Mur3 LINE L1 -1387 4493 4383 6 1134 477 90 0 0 chr9 72021474 72021541 -52054631 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1134 719 255 52 129 chr9 72021541 72021563 -52054609 - L1_Mur3 LINE L1 -1498 4382 4375 6 1134 697 268 62 120 chr9 72021563 72021872 -52054300 - B4A SINE B4 0 292 2 6 1134 719 255 52 129 chr9 72021872 72022275 -52053897 - L1_Mur3 LINE L1 -1506 4374 3978 6 1134 272 200 15 30 chr9 72022818 72022885 -52053287 - L1_Mur3 LINE L1 -1956 3924 3859 6 1134 1348 247 10 78 chr9 72022888 72023288 -52052884 + MTE2a LTR MaLR 6 378 -1 6 1134 370 223 191 12 chr9 72023319 72023487 -52052685 - L1MA4 LINE L1 -2295 3848 3651 5 1134 348 167 0 0 chr9 72023933 72024005 -52052167 + CT-rich Low_complexity Low_complexity 2 73 0 7 1134 634 168 0 17 chr9 72024030 72024145 -52052027 - PB1D9 SINE Alu -7 113 1 7 1134 400 245 32 0 chr9 72024327 72024421 -52051751 - RSINE1 SINE B4 -19 146 50 7 1134 388 267 114 0 chr9 72024431 72024536 -52051636 - RSINE1 SINE B4 -45 120 4 7 1134 384 350 83 14 chr9 72024730 72025020 -52051152 - L2 LINE L2 -762 2657 2348 7 1134 654 42 31 0 chr9 72025877 72025973 -52050199 - L1Md_F2 LINE L1 -7 6575 6477 7 1134 741 249 22 18 chr9 72026028 72026227 -52049945 - B3 SINE B2 0 198 1 7 1134 551 190 106 16 chr9 72026229 72026352 -52049820 - B1_Mur1 SINE Alu -1 148 15 7 1134 199 231 19 0 chr9 72026772 72026824 -52049348 + MIRb SINE MIR 65 117 -151 7 1134 238 358 18 9 chr9 72027883 72027993 -52048179 + L2c LINE L2 3253 3363 -24 7 1134 507 343 66 110 chr9 72028503 72029001 -52047171 - MLT1K LTR MaLR -86 509 34 8 1134 301 250 56 0 chr9 72029186 72029258 -52046914 - ID4 SINE ID -6 77 2 8 1134 396 0 0 0 chr9 72029385 72029429 -52046743 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1134 185 355 42 21 chr9 72030028 72030123 -52046049 - MIRm SINE MIR -17 259 163 8 1134 181 284 60 24 chr9 72030728 72030811 -52045361 + L2b LINE L2 3289 3374 -1 8 1134 1148 58 0 0 chr9 72031385 72031523 -52044649 + B1_Mus2 SINE Alu 1 138 -9 8 1134 201 39 0 0 chr9 72031523 72031549 -52044623 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1134 261 83 0 0 chr9 72032103 72032139 -52044033 + (CCCCCA)n Simple_repeat Simple_repeat 4 39 0 8 1134 918 140 14 7 chr9 72033284 72033428 -52042744 - B1_Mus1 SINE Alu 0 148 4 8 1134 691 209 91 40 chr9 72033734 72033933 -52042239 + B3 SINE B2 2 210 -6 8 1134 290 292 7 44 chr9 72033953 72034089 -52042083 + CT-rich Low_complexity Low_complexity 3 133 0 9 1134 268 282 91 27 chr9 72034150 72034336 -52041836 - L1M5 LINE L1 -786 5454 5257 9 1134 602 234 40 55 chr9 72034434 72034633 -52041539 - B3A SINE B2 0 198 3 9 1134 1212 111 15 0 chr9 72034771 72035115 -52041057 + (TCTA)n Simple_repeat Simple_repeat 1 349 0 9 1134 23 68 0 0 chr9 72035723 72035767 -52040405 + AT_rich Low_complexity Low_complexity 1 44 0 9 1134 456 268 0 0 chr9 72035836 72035948 -52040224 + PB1 SINE Alu 1 112 -15 9 1134 830 149 20 13 chr9 72035981 72036131 -52040041 + ORR1A4 LTR MaLR 1 151 -178 9 1134 1077 125 0 0 chr9 72036338 72036506 -52039666 + ORR1A4 LTR MaLR 162 329 0 9 1134 759 197 82 33 chr9 72037058 72037242 -52038930 - B3A SINE B2 -5 193 1 9 1134 742 171 124 86 chr9 72038524 72038710 -52037462 - B3A SINE B2 -5 193 1 9 1134 372 308 87 56 chr9 72039250 72039554 -52036618 + LTR81C LTR ERV1? 664 1212 -181 9 1134 1712 26 0 0 chr9 72040690 72040883 -52035289 - B2_Mm1a SINE B2 0 193 1 1 1134 563 310 60 28 chr9 72041000 72041282 -52034890 - L2 LINE L2 -873 2546 2256 1 1134 747 52 0 0 chr9 72042162 72042258 -52033914 + (TCCC)n Simple_repeat Simple_repeat 3 98 0 1 1134 1441 62 6 0 chr9 72042497 72042675 -52033497 + B2_Mm1a SINE B2 1 179 -14 1 1134 392 296 186 17 chr9 72043255 72043582 -52032590 - L1_Mur2 LINE L1 -479 5398 5033 1 1134 456 284 125 65 chr9 72043602 72043938 -52032234 - ORR1E LTR MaLR -2 357 2 1 1134 315 333 100 79 chr9 72043939 72044219 -52031953 + MER31B LTR ERV1 36 321 -145 1 1134 240 336 44 20 chr9 72045440 72045603 -52030569 + MIR3 SINE MIR 9 171 -37 1 1134 2146 178 121 4 chr9 72046039 72046501 -52029671 + RMER20A LTR ERVK 1 516 0 1 1134 268 375 21 7 chr9 72047086 72047231 -52028941 - MLT1K LTR MaLR -183 412 266 1 1134 2192 147 41 6 chr9 72047656 72048018 -52028154 - ORR1C1 LTR MaLR -2 376 2 1 1134 1192 128 11 11 chr9 72048583 72048773 -52027399 + B2_Mm2 SINE B2 1 190 -5 1 1134 280 176 107 13 chr9 72049229 72049304 -52026868 + RMER17C-int LTR ERVK 2818 2899 -339 1 1134 210 128 0 0 chr9 72049304 72049343 -52026829 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1134 241 179 12 37 chr9 72049373 72049454 -52026718 - Lx9 LINE L1 -127 7517 7439 1 1134 628 140 0 9 chr9 72049467 72049575 -52026597 + B2_Mm2 SINE B2 1 107 -88 1 1134 356 266 2 6 chr9 72049783 72049887 -52026285 - PB1D10 SINE Alu -34 114 12 1 1134 287 370 100 36 chr9 72050294 72050574 -52025598 + MLT1H1-int LTR MaLR 584 881 -528 1 1134 273 57 0 0 chr9 72050652 72050687 -52025485 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 1134 347 233 272 0 chr9 72050702 72050805 -52025367 - RSINE1 SINE B4 -14 151 21 1 1134 799 297 14 9 chr9 72050830 72051044 -52025128 - ID_B1 SINE B4 -7 217 3 1 1134 198 0 0 0 chr9 72051062 72051084 -52025088 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1134 1057 277 46 29 chr9 72051091 72051507 -52024665 - L1MB3 LINE L1 -77 6106 5684 1 1134 1567 189 131 12 chr9 72051651 72051844 -52024328 - ORR1C2 LTR MaLR 0 384 167 1 1134 387 0 0 0 chr9 72051844 72051887 -52024285 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1134 1567 189 131 12 chr9 72051887 72052036 -52024136 - ORR1C2 LTR MaLR -218 166 1 1 1134 1226 41 0 0 chr9 72052961 72053107 -52023065 - B1_Mm SINE Alu 0 147 2 1 1134 1355 91 11 0 chr9 72053121 72053308 -52022864 - B2_Mm1t SINE B2 -2 191 3 1 1134 248 278 0 27 chr9 72053764 72053838 -52022334 + Cheshire DNA MER1_type 202 273 -2147 1 1134 243 271 0 0 chr9 72053878 72053937 -52022235 + MLT1H1 LTR MaLR 497 555 0 1 1134 776 275 5 21 chr9 72054860 72055046 -52021126 + ID_B1 SINE B4 9 191 -33 1 1134 210 338 0 0 chr9 72055311 72055388 -52020784 - MIR3 SINE MIR -7 201 125 1 1134 576 270 239 16 chr9 72055667 72055986 -52020186 + MLT1B LTR MaLR 1 390 0 1 1134 204 384 80 0 chr9 72055997 72056109 -52020063 - L3 LINE CR1 -481 4008 3888 1 1134 197 343 45 18 chr9 72056933 72057043 -52019129 + L3 LINE CR1 3902 4014 -475 1 1134 1184 48 0 7 chr9 72057100 72057248 -52018924 + B1_Mus1 SINE Alu 2 148 0 1 1134 245 197 0 13 chr9 72057879 72057956 -52018216 + GA-rich Low_complexity Low_complexity 2 77 0 1 1134 291 140 0 0 chr9 72058487 72058537 -52017635 + (GGA)n Simple_repeat Simple_repeat 2 51 0 1 1134 1328 96 17 0 chr9 72058846 72059023 -52017149 + B2_Mm2 SINE B2 2 181 -14 1 1134 321 134 349 37 chr9 72059037 72059146 -52017026 + B2_Mm2 SINE B2 50 192 -3 1 1134 407 89 159 5 chr9 72059550 72059654 -52016518 - B2_Mm2 SINE B2 -11 184 46 1 1134 1358 74 17 0 chr9 72059681 72059857 -52016315 - B2_Mm1t SINE B2 -14 179 1 1 1134 1070 44 81 0 chr9 72059952 72060088 -52016084 + B1_Mus1 SINE Alu 2 148 0 1 1134 201 158 0 0 chr9 72060088 72060126 -52016046 + A-rich Low_complexity Low_complexity 3 40 0 1 1134 263 150 0 16 chr9 72060410 72060471 -52015701 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1134 417 96 362 0 chr9 72060590 72060684 -52015488 - B1_Mur3 SINE Alu 0 149 22 1 1134 183 80 0 0 chr9 72060690 72060715 -52015457 + (CCA)n Simple_repeat Simple_repeat 3 27 0 1 1134 2874 149 100 17 chr9 72061003 72061543 -52014629 + RMER4B LTR ERVK 1 585 0 1 1134 1389 70 43 0 chr9 72062082 72062269 -52013903 - B2_Mm2 SINE B2 0 195 1 1 1134 549 260 63 25 chr9 72062381 72062539 -52013633 + RSINE1 SINE B4 2 165 0 1 1134 333 187 0 0 chr9 72062541 72062616 -52013556 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1134 201 121 0 0 chr9 72062652 72062685 -52013487 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1134 243 250 0 0 chr9 72063258 72063310 -52012862 - LTR48B LTR ERV1 -592 52 1 1 1134 861 179 0 0 chr9 72063981 72064121 -52012051 + B1_Mur4 SINE Alu 2 141 -9 1 1134 971 122 7 39 chr9 72064712 72064866 -52011306 + B1_Mur3 SINE Alu 1 149 0 1 1134 568 345 99 51 chr9 72064892 72065304 -52010868 - LTR16B LTR ERVL -29 434 3 1 1134 947 238 37 0 chr9 72065478 72065692 -52010480 - ID_B1 SINE B4 -2 222 1 1 1134 198 333 192 12 chr9 72065692 72065932 -52010240 + L2 LINE L2 2102 2384 -1035 1 1134 627 14 0 0 chr9 72066051 72066123 -52010049 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1134 414 0 0 0 chr9 72066123 72066169 -52010003 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1134 518 244 124 25 chr9 72066686 72066888 -52009284 + LTR84a LTR ERVL 95 316 -441 1 1134 261 318 22 93 chr9 72066935 72067074 -52009098 + LTR84a LTR ERVL 311 439 -318 1 1134 395 279 23 0 chr9 72067289 72067418 -52008754 + B1F SINE Alu 2 133 -16 1 1134 204 40 0 0 chr9 72067421 72067446 -52008726 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 1 1134 555 16 0 0 chr9 72067448 72067512 -52008660 + (GGAA)n Simple_repeat Simple_repeat 4 67 0 1 1134 191 204 0 20 chr9 72067605 72067655 -52008517 + A-rich Low_complexity Low_complexity 2 50 0 1 1134 871 165 216 0 chr9 72068300 72068476 -52007696 + B3 SINE B2 2 215 -1 1 1134 475 355 15 5 chr9 72068533 72068734 -52007438 - L1M7 LINE L1 -2095 5787 5585 1 1134 237 252 75 45 chr9 72068811 72068944 -52007228 - L1M7 LINE L1 -2456 5426 5290 1 1134 381 244 13 0 chr9 72068949 72069027 -52007145 - ID4_ SINE ID 0 83 5 1 1134 355 236 11 43 chr9 72069060 72069153 -52007019 - PB1 SINE Alu -3 124 35 1 1134 846 184 13 97 chr9 72069210 72069394 -52006778 + B3 SINE B2 1 170 -46 1 1134 189 0 0 0 chr9 72069394 72069415 -52006757 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 1 1134 846 184 13 97 chr9 72069415 72069458 -52006714 + B3 SINE B2 171 209 -7 1 1134 568 90 22 0 chr9 72069477 72069566 -52006606 + B1_Mm SINE Alu 1 91 -56 1 1134 393 22 0 0 chr9 72069582 72069628 -52006544 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1134 260 292 52 17 chr9 72069702 72069817 -52006355 - L1M7 LINE L1 -4667 1576 1458 1 1134 491 204 44 9 chr9 72069822 72069936 -52006236 - PB1D9 SINE Alu -1 119 2 1 1134 203 146 62 0 chr9 72069974 72070022 -52006150 + (TTG)n Simple_repeat Simple_repeat 2 52 0 1 1134 642 26 0 0 chr9 72070033 72070109 -52006063 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 1 1134 243 216 52 39 chr9 72070296 72070373 -52005799 - PB1D10 SINE Alu -3 114 37 1 1134 387 0 0 0 chr9 72070391 72070434 -52005738 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1134 491 209 27 18 chr9 72070493 72070592 -52005580 - ORR1D1 LTR MaLR -13 361 261 1 1134 203 0 37 0 chr9 72070592 72070619 -52005553 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 1 1134 516 200 303 0 chr9 72070619 72070665 -52005507 - ORR1D1 LTR MaLR -146 228 180 1 1134 348 111 0 0 chr9 72070665 72070728 -52005444 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 1 1134 516 200 303 0 chr9 72070728 72070856 -52005316 - ORR1D1 LTR MaLR -195 179 2 1 1134 243 0 0 0 chr9 72070959 72070986 -52005186 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1134 750 165 39 0 chr9 72070987 72071114 -52005058 - B1_Mur1 SINE Alu -13 136 5 1 1134 261 0 0 0 chr9 72071274 72071303 -52004869 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1134 279 229 0 28 chr9 72071312 72071384 -52004788 - ID_B1 SINE B4 -9 215 146 1 1134 765 158 0 0 chr9 72071353 72071480 -52004692 - B1_Mur1 SINE Alu -22 127 1 1 1134 411 321 21 26 chr9 72071561 72071750 -52004422 - L1MB4 LINE L1 -77 6094 5907 1 1134 1710 188 147 78 chr9 72071750 72072056 -52004116 - MT2A LTR ERVL 0 533 169 1 1134 315 0 0 0 chr9 72072056 72072091 -52004081 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1134 1160 65 0 0 chr9 72072091 72072229 -52003943 - B1_Mm SINE Alu -9 138 1 1 1134 1710 188 147 78 chr9 72072229 72072418 -52003754 - MT2A LTR ERVL -365 168 4 1 1134 450 208 32 40 chr9 72072432 72072557 -52003615 - L1MB4 LINE L1 -276 5904 5781 1 1134 347 258 94 6 chr9 72072557 72072717 -52003455 - L1M7 LINE L1 -5348 870 697 1 1134 287 261 120 43 chr9 72073190 72073282 -52002890 - L1M7 LINE L1 -6113 105 7 1 1134 490 287 22 0 chr9 72073386 72073522 -52002650 - ID_B1 SINE B4 -35 189 51 1 1134 790 288 74 29 chr9 72075617 72076015 -52000157 + L1MB8 LINE L1 5732 6150 -28 1 1134 509 117 0 53 chr9 72076015 72076132 -52000040 - B1_Mur4 SINE Alu -2 148 19 1 1134 235 258 32 11 chr9 72076377 72076412 -51999760 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1 1134 387 0 0 0 chr9 72076412 72076455 -51999717 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1 1134 235 258 32 11 chr9 72076455 72076513 -51999659 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1 1134 499 262 8 8 chr9 72076556 72076683 -51999489 - MLT2D LTR ERVL -251 163 37 1 1134 822 123 89 13 chr9 72076705 72076862 -51999310 - URR1A DNA MER1_type 0 226 58 1 1134 207 0 0 0 chr9 72076875 72076898 -51999274 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1134 661 47 0 0 chr9 72076943 72077028 -51999144 + BC1_Mm scRNA scRNA 1 85 -67 1 1134 453 50 0 0 chr9 72077056 72077116 -51999056 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1 1134 1643 193 182 5 chr9 72077116 72077507 -51998665 - MT2A LTR ERVL -73 460 1 1 1134 1307 166 41 60 chr9 72077507 72077533 -51998639 - MERVL_2A-int LTR ERVL 0 5761 5739 1 1134 4989 155 55 13 chr9 72077533 72078398 -51997774 - RMER19B LTR ERVK 0 902 1 2 1134 1307 166 41 60 chr9 72078398 72078686 -51997486 - MERVL_2A-int LTR ERVL -23 5738 5453 1 1134 2005 162 2 82 chr9 72078689 72078766 -51997406 - ORR1C2 LTR MaLR 0 384 323 2 1134 703 140 285 84 chr9 72078766 72078806 -51997366 + B3 SINE B2 2 41 -175 2 1134 1498 57 0 0 chr9 72078806 72078983 -51997189 + B2_Mm1a SINE B2 2 178 -15 2 1134 185 0 40 0 chr9 72078986 72079011 -51997161 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1134 703 140 285 84 chr9 72079011 72079145 -51997027 + B3 SINE B2 42 216 0 2 1134 2005 162 2 82 chr9 72079145 72079484 -51996688 - ORR1C2 LTR MaLR -62 322 1 2 1134 4512 154 59 24 chr9 72079484 72079768 -51996404 - MERVL_2A-int LTR ERVL -304 5457 5158 1 1134 372 71 0 0 chr9 72079768 72079824 -51996348 + (TCTCTG)n Simple_repeat Simple_repeat 4 59 0 2 1134 4512 154 59 24 chr9 72079824 72079932 -51996240 - MERVL_2A-int LTR ERVL -604 5157 5052 1 1134 2172 57 18 7 chr9 72079932 72080216 -51995956 + L1_Mus2 LINE L1 6280 6566 0 2 1134 4512 154 59 24 chr9 72080216 72080613 -51995559 - MERVL_2A-int LTR ERVL -710 5051 4639 1 1134 543 237 39 27 chr9 72080973 72081200 -51994972 + MTE2b LTR MaLR 1 359 -20 2 1134 279 79 0 0 chr9 72081204 72081242 -51994930 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1134 673 143 0 0 chr9 72081352 72081457 -51994715 - B3 SINE B2 -97 119 15 2 1134 862 281 55 15 chr9 72081643 72081914 -51994258 - B4A SINE B4 -10 282 1 2 1134 750 153 0 0 chr9 72082205 72082329 -51993843 + B1_Mur4 SINE Alu 26 149 -1 2 1134 424 282 47 57 chr9 72082890 72083082 -51993090 + MER121 Unknown Unknown 109 298 -114 2 1134 563 256 92 22 chr9 72083322 72083355 -51992817 - B3A SINE B2 0 198 161 2 1134 348 24 0 0 chr9 72083355 72083396 -51992776 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1134 563 256 92 22 chr9 72083396 72083546 -51992626 - B3A SINE B2 -38 160 2 2 1134 397 200 49 62 chr9 72083583 72083616 -51992556 - ID_B1 SINE B4 -6 218 167 2 1134 602 132 19 0 chr9 72083616 72083635 -51992537 - B1_Mur3 SINE Alu -41 108 90 2 1134 351 0 0 0 chr9 72083635 72083674 -51992498 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1134 631 58 0 0 chr9 72083674 72083760 -51992412 - B1_Mus2 SINE Alu -61 86 1 2 1134 292 212 35 70 chr9 72084667 72084753 -51991419 - L1MB4 LINE L1 -25 6155 6073 2 1134 199 376 20 10 chr9 72084916 72085018 -51991154 + MIR SINE MIR 10 112 -150 2 1134 823 272 26 4 chr9 72085027 72085260 -51990912 + L1MC2 LINE L1 5641 5878 -466 2 1134 1187 251 85 32 chr9 72085260 72085601 -51990571 - ORR1E LTR MaLR 0 359 1 2 1134 671 238 137 13 chr9 72085624 72085850 -51990322 + L1MC2 LINE L1 5895 6148 -196 2 1134 302 264 130 11 chr9 72085853 72085987 -51990185 + L1MC2 LINE L1 6187 6296 -48 2 1134 231 114 0 0 chr9 72086181 72086216 -51989956 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 1134 196 230 108 0 chr9 72086285 72086359 -51989813 + L4 LINE RTE 1367 1448 -581 2 1134 223 194 28 0 chr9 72086499 72086561 -51989611 + T-rich Low_complexity Low_complexity 13 76 0 2 1134 1274 34 0 0 chr9 72086561 72086708 -51989464 - B1_Mus2 SINE Alu 0 147 1 2 1134 674 273 17 39 chr9 72086721 72086900 -51989272 - B3A SINE B2 -23 175 1 2 1134 2881 67 16 8 chr9 72086993 72087369 -51988803 + L1_Mus1 LINE L1 6189 6567 0 2 1134 2483 100 23 3 chr9 72087523 72087873 -51988299 + MurERV4_19-int LTR ERVK 2301 2657 -3123 2 1134 1259 27 0 7 chr9 72087873 72088021 -51988151 + B1_Mm SINE Alu 1 147 0 2 1134 228 154 0 0 chr9 72088022 72088074 -51988098 + A-rich Low_complexity Low_complexity 1 52 0 2 1134 1382 85 6 0 chr9 72088079 72088256 -51987916 + B2_Mm1t SINE B2 2 179 -14 2 1134 1100 89 0 7 chr9 72088271 72088418 -51987754 - B1_Mm SINE Alu 0 147 2 2 1134 2132 151 33 165 chr9 72088427 72088754 -51987418 + L1_Mur1 LINE L1 4590 4889 -997 2 1134 250 114 0 0 chr9 72088754 72088789 -51987383 - B1_Mus2 SINE Alu -111 36 2 2 1134 2132 151 33 165 chr9 72088789 72089032 -51987140 + L1_Mur1 LINE L1 4890 5114 -772 2 1134 1140 68 7 0 chr9 72089033 72089180 -51986992 + B1_Mus1 SINE Alu 1 148 0 2 141 7068 97 14 4 chr9 72089204 72090173 -51985999 + Lx2A1 LINE L1 5783 6761 -247 2 1135 1072 162 0 95 chr9 72090173 72090357 -51985815 + RLTR13D1 LTR ERVK 1 177 -629 2 1135 1233 54 0 0 chr9 72090357 72090504 -51985668 - B1_Mm SINE Alu 0 147 1 2 1135 1072 162 0 95 chr9 72090504 72090551 -51985621 + RLTR13D1 LTR ERVK 178 210 -596 2 1135 529 80 0 0 chr9 72090545 72090620 -51985552 + RLTR13D1 LTR ERVK 542 616 -417 2 1135 1151 173 64 34 chr9 72090626 72090890 -51985282 - RLTR46 LTR ERVK -5 315 44 2 1135 4252 119 6 5 chr9 72090901 72091903 -51984269 - IAPEY3-int LTR ERVK 0 7680 6651 2 1135 22950 212 22 6 chr9 72092228 72097050 -51979122 - IAPEY3-int LTR ERVK -2223 5457 535 2 1135 475 217 29 126 chr9 72097046 72097252 -51978920 - IAPEY3-int LTR ERVK -7494 186 1 2 1135 1167 172 66 40 chr9 72097252 72097524 -51978648 - RLTR46 LTR ERVK 0 320 42 2 1135 2038 140 35 78 chr9 72097532 72097724 -51978448 + RLTR13C2 LTR ERVK 336 510 -298 2 1135 1207 41 0 26 chr9 72097724 72097876 -51978296 - B1_Mus1 SINE Alu 0 148 1 2 1135 2038 151 43 90 chr9 72097876 72098166 -51978006 + RLTR13C2 LTR ERVK 511 751 -57 2 1135 1545 106 12 0 chr9 72098166 72098412 -51977760 + Lx2A1 LINE L1 6755 7003 -5 2 1135 3987 103 27 11 chr9 72098412 72099032 -51977140 + MurERV4_19-int LTR ERVK 3297 3926 -1854 2 1135 435 193 23 0 chr9 72099035 72099123 -51977049 - RLTR1B LTR ERV1 -80 432 343 2 1135 1259 51 85 8 chr9 72099127 72099468 -51976704 - RLTR1B LTR ERV1 -102 410 1 2 1135 8727 107 26 77 chr9 72099468 72099900 -51976272 + MurERV4_19-int LTR ERVK 3928 4359 -1421 2 1135 1455 40 6 0 chr9 72099900 72100073 -51976099 + B2_Mm1a SINE B2 2 175 -18 2 1135 8727 107 26 77 chr9 72100073 72100469 -51975703 + MurERV4_19-int LTR ERVK 4360 4740 -1040 2 1135 3401 144 151 30 chr9 72100469 72101042 -51975130 - RMER19A LTR ERVK 0 737 100 2 1135 1081 63 14 0 chr9 72101042 72101185 -51974987 + B1_Mus2 SINE Alu 2 146 -1 2 1135 222 37 0 0 chr9 72101185 72101212 -51974960 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1135 3401 144 151 30 chr9 72101212 72101295 -51974877 - RMER19A LTR ERVK -638 99 2 2 1135 8727 107 26 77 chr9 72101295 72101994 -51974178 + MurERV4_19-int LTR ERVK 4741 5379 -401 2 1135 1338 176 53 15 chr9 72101994 72102259 -51973913 - RLTR41 LTR ERV1 0 446 172 2 1135 297 135 0 0 chr9 72102342 72102394 -51973778 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1135 1182 68 7 0 chr9 72102394 72102541 -51973631 - B1_Mus1 SINE Alu 0 148 1 2 1135 1054 110 42 41 chr9 72102576 72102852 -51973320 + MurERV4_19-int LTR ERVK 5376 5774 -6 2 1135 2046 124 7 15 chr9 72102852 72103222 -51972950 - RMER16 LTR ERVK 0 533 1 2 1135 3241 169 24 45 chr9 72103234 72103858 -51972314 + RMER19C LTR ERVK 1 611 0 2 1135 213 388 83 27 chr9 72103969 72104271 -51971901 + L4 LINE RTE 1015 1319 -710 2 1135 441 0 0 0 chr9 72104271 72104320 -51971852 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1135 216 0 0 0 chr9 72104320 72104343 -51971829 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1135 213 388 83 27 chr9 72104343 72104449 -51971723 + L4 LINE RTE 1320 1446 -583 2 1135 422 242 57 0 chr9 72104625 72104749 -51971423 - B3 SINE B2 0 216 86 2 1135 324 70 0 0 chr9 72104771 72104814 -51971358 + (TATG)n Simple_repeat Simple_repeat 4 46 0 2 1135 1708 225 32 75 chr9 72105032 72105060 -51971112 - RMER19C LTR ERVK 0 611 595 2 1135 207 0 0 0 chr9 72105060 72105083 -51971089 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1135 1150 66 0 0 chr9 72105083 72105220 -51970952 - B1_Mm SINE Alu -10 137 1 2 1135 1708 225 32 75 chr9 72105220 72105685 -51970487 - RMER19C LTR ERVK -17 594 139 2 1135 238 67 0 0 chr9 72105724 72105769 -51970403 - Lx5 LINE L1 -38 7012 6968 2 1135 280 225 191 48 chr9 72105978 72106062 -51970110 - MER34A LTR ERV1 -9 578 483 2 1135 496 162 0 0 chr9 72106086 72106166 -51970006 - RMER6D LTR ERVK -4 716 637 2 1135 1229 119 10 5 chr9 72106197 72106400 -51969772 - RMER6D LTR ERVK -514 206 3 2 1135 3852 158 95 63 chr9 72106449 72107294 -51968878 + RMER19B LTR ERVK 1 872 -30 2 1135 1122 88 0 0 chr9 72107294 72107441 -51968731 + B1_Mus2 SINE Alu 1 147 0 2 1135 204 40 0 0 chr9 72107451 72107476 -51968696 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1135 342 0 0 0 chr9 72108109 72108147 -51968025 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1135 260 355 38 82 chr9 72108438 72108705 -51967467 - MLT1K LTR MaLR -81 514 260 2 1135 284 221 91 23 chr9 72109233 72109321 -51966851 + RMER10A LTR ERVL 321 414 -28 2 1135 281 146 0 18 chr9 72109679 72109735 -51966437 - RLTR31_Mur LTR ERVK 0 553 499 2 1135 254 231 0 15 chr9 72109814 72109880 -51966292 - B4 SINE B4 -145 147 83 2 1135 624 187 88 83 chr9 72109909 72110090 -51966082 + RLTR14 LTR ERV1 62 243 -139 2 1135 189 0 0 0 chr9 72110090 72110111 -51966061 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 2 1135 193 26 0 114 chr9 72110115 72110137 -51966035 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1135 1117 68 0 20 chr9 72110137 72110287 -51965885 + B1_Mus1 SINE Alu 1 147 -1 2 1135 193 26 0 114 chr9 72110287 72110308 -51965864 + (CAAAA)n Simple_repeat Simple_repeat 2 20 0 2 1135 802 47 0 0 chr9 72110667 72110774 -51965398 - B1_Mm SINE Alu 0 147 41 2 1135 1411 66 0 6 chr9 72110914 72111096 -51965076 + B2_Mm2 SINE B2 3 183 -12 2 1135 1045 136 73 0 chr9 72111262 72111453 -51964719 + URR1A DNA MER1_type 22 226 0 2 1135 1343 137 91 170 chr9 72111489 72111919 -51964253 + RMER10B LTR ERVL 1 396 -2 2 1135 2029 120 29 154 chr9 72111919 72112130 -51964042 - RLTR23 LTR ERV1 0 430 237 2 1135 1630 215 100 84 chr9 72112130 72112449 -51963723 + RMER2 LTR ERV1 1 340 -227 2 1135 369 0 0 0 chr9 72112449 72112490 -51963682 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1135 1630 215 100 84 chr9 72112490 72112728 -51963444 + RMER2 LTR ERV1 341 567 0 2 1135 2029 120 29 154 chr9 72112728 72113008 -51963164 - RLTR23 LTR ERV1 -194 236 1 2 1135 446 312 45 37 chr9 72113446 72113770 -51962402 - RLTR16 LTR ERVK -269 423 49 2 1135 7638 55 3 17 chr9 72113960 72114979 -51961193 - MMETn-int LTR ERVK -2900 1944 940 2 1135 3709 74 50 15 chr9 72114979 72115501 -51960671 - LTRIS2 LTR ERV1 0 564 25 2 1135 6565 55 23 70 chr9 72115510 72116498 -51959674 - MMETn-int LTR ERVK -3901 943 2 2 1135 1897 106 59 7 chr9 72116499 72116803 -51959369 - RLTRETN_Mm LTR ERVK 0 322 3 2 1135 1103 75 0 0 chr9 72116842 72116989 -51959183 + B1_Mus2 SINE Alu 1 147 0 2 1135 730 121 60 0 chr9 72117306 72117422 -51958750 + B1_Mus2 SINE Alu 2 124 -23 2 1135 200 100 25 0 chr9 72117422 72117462 -51958710 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 2 1135 893 150 0 7 chr9 72117847 72117988 -51958184 + B1_Mur4 SINE Alu 6 145 -5 2 1135 2679 74 14 115 chr9 72118896 72119341 -51956831 + MTB LTR MaLR 1 400 0 2 1135 23 0 0 0 chr9 72119924 72119947 -51956225 + AT_rich Low_complexity Low_complexity 1 23 0 2 1135 822 146 0 65 chr9 72119949 72120103 -51956069 - B1_Mus1 SINE Alu 0 148 5 2 1135 3767 74 95 4 chr9 72120167 72120684 -51955488 - LTRIS2 LTR ERV1 0 564 1 2 1135 527 289 67 33 chr9 72121021 72121261 -51954911 - RLTR16 LTR ERVK -234 271 24 2 1135 581 245 154 21 chr9 72121269 72121457 -51954715 + MT2B LTR ERVL 389 601 0 3 1135 804 215 67 16 chr9 72121910 72122104 -51954068 - B3 SINE B2 -11 205 2 3 1135 234 150 0 0 chr9 72122117 72122157 -51954015 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 3 1135 207 139 0 0 chr9 72122766 72122802 -51953370 + (TCC)n Simple_repeat Simple_repeat 2 37 0 3 1135 195 69 0 0 chr9 72122851 72122880 -51953292 + (CCCG)n Simple_repeat Simple_repeat 4 32 0 3 1135 24 115 0 0 chr9 72122889 72123011 -51953161 + GC_rich Low_complexity Low_complexity 1 122 0 3 1135 23 0 0 0 chr9 72123057 72123080 -51953092 + GC_rich Low_complexity Low_complexity 1 23 0 3 1135 351 0 0 0 chr9 72123210 72123249 -51952923 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1135 23 0 0 0 chr9 72123652 72123675 -51952497 + AT_rich Low_complexity Low_complexity 1 23 0 3 1135 465 214 17 26 chr9 72124855 72124970 -51951202 + PB1D9 SINE Alu 2 115 -5 3 1135 1003 123 207 0 chr9 72125287 72125466 -51950706 + B3 SINE B2 1 216 0 3 1135 24 32 0 0 chr9 72125552 72125583 -51950589 + AT_rich Low_complexity Low_complexity 1 31 0 3 1135 270 56 0 0 chr9 72125624 72125660 -51950512 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1135 833 53 88 0 chr9 72125661 72125775 -51950397 - B1_Mm SINE Alu -12 135 12 3 1135 478 280 0 0 chr9 72125803 72125903 -51950269 - PB1D10 SINE Alu -5 112 13 3 1135 275 181 232 50 chr9 72126013 72126112 -51950060 - PB1D7 SINE Alu 0 120 4 3 1135 327 265 60 20 chr9 72126293 72126393 -51949779 - Looper DNA PiggyBac -737 821 718 3 1135 425 271 40 73 chr9 72126540 72126580 -51949592 + MER34A LTR ERV1 9 44 -527 3 1135 2170 145 63 37 chr9 72126580 72127010 -51949162 - RMER10A LTR ERVL -1 441 1 3 1135 425 217 104 102 chr9 72127010 72127174 -51948998 + MER34A LTR ERV1 45 265 -306 3 1135 249 290 194 39 chr9 72127190 72127319 -51948853 - ID_B1 SINE B4 -1 223 75 3 1135 483 328 39 29 chr9 72127360 72127567 -51948605 + MER34A LTR ERV1 363 571 0 3 1135 382 272 56 71 chr9 72127568 72127750 -51948422 - Looper DNA PiggyBac -1043 515 336 3 1135 5367 97 33 29 chr9 72127750 72128592 -51947580 - Lx3A LINE L1 -2 6979 6134 3 1135 382 250 459 143 chr9 72128592 72128727 -51947445 - Looper DNA PiggyBac -1223 335 149 3 1135 283 216 432 0 chr9 72128727 72128838 -51947334 + RSINE1 SINE B4 3 161 -4 3 1135 305 248 67 149 chr9 72128838 72128907 -51947265 - Looper DNA PiggyBac -1410 148 94 3 1135 225 154 0 0 chr9 72129385 72129424 -51946748 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1135 783 255 137 78 chr9 72129440 72129797 -51946375 - MTEa LTR MaLR -1 378 1 3 1135 1166 75 0 0 chr9 72129827 72129973 -51946199 - B1_Mm SINE Alu 0 147 2 3 1135 21 0 0 0 chr9 72130118 72130139 -51946033 + AT_rich Low_complexity Low_complexity 1 21 0 3 1135 13736 68 30 20 chr9 72130693 72131079 -51945093 - L1VL2 LINE L1 -626 2989 2613 3 1135 221 0 35 0 chr9 72131079 72131108 -51945064 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3 1135 13736 68 30 20 chr9 72131108 72131123 -51945049 - MusHAL1 LINE L1 -1003 1709 1709 3 1135 1070 108 0 0 chr9 72131123 72131271 -51944901 - B1_Mus1 SINE Alu 0 148 1 3 1135 13736 68 30 21 chr9 72131271 72133024 -51943148 - L1VL2 LINE L1 -1003 2612 824 3 1135 438 20 0 0 chr9 72133024 72133075 -51943097 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1135 818 95 0 265 chr9 72133075 72133275 -51942897 - B1_Mus1 SINE Alu -1 147 1 3 1135 6184 83 37 32 chr9 72133275 72133313 -51942859 - L1VL2 LINE L1 -5512 823 797 3 1135 457 84 34 57 chr9 72133313 72133401 -51942771 - L1Md_F2 LINE L1 0 6582 6497 3 1135 6184 83 37 32 chr9 72133401 72134047 -51942125 - L1VL2 LINE L1 -5539 796 123 3 1135 901 268 40 7 chr9 72134312 72134588 -51941584 - L1MB5 LINE L1 -7 6167 5881 3 1135 465 19 0 0 chr9 72134719 72134773 -51941399 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 3 1135 1122 99 18 12 chr9 72134774 72134937 -51941235 - B2_Mm2 SINE B2 -31 164 1 3 1135 616 250 46 31 chr9 72134966 72135160 -51941012 - Lx7 LINE L1 -729 6967 6771 3 1135 488 143 0 45 chr9 72135189 72135277 -51940895 + RLTR19C LTR ERVK 421 504 -2 3 1135 2849 123 136 8 chr9 72135332 72135841 -51940331 + RMER4B LTR ERVK 1 574 -11 3 1135 745 181 72 0 chr9 72136058 72136196 -51939976 - B1_Mur3 SINE Alu -1 148 1 3 1135 338 0 24 0 chr9 72136849 72136891 -51939281 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1135 1086 86 0 0 chr9 72136891 72137030 -51939142 - B1_Mus2 SINE Alu -8 139 1 3 1135 287 175 0 60 chr9 72137181 72137248 -51938924 - Lx5 LINE L1 -8 7042 6980 3 1135 205 211 18 0 chr9 72137957 72138014 -51938158 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 3 1135 400 235 20 20 chr9 72138704 72138804 -51937368 - B4A SINE B4 -14 278 179 3 1135 318 263 0 13 chr9 72138853 72138930 -51937242 - B4 SINE B4 -215 77 2 3 1135 438 214 114 19 chr9 72139064 72139169 -51937003 - PB1D9 SINE Alu 0 120 6 3 1135 365 317 29 9 chr9 72139333 72139438 -51936734 - PB1D10 SINE Alu -7 110 4 3 1135 307 73 0 0 chr9 72139605 72139646 -51936526 + B1_Mur4 SINE Alu 101 141 -9 3 1135 21 71 0 0 chr9 72139963 72140005 -51936167 + AT_rich Low_complexity Low_complexity 1 42 0 3 1135 273 276 0 17 chr9 72140010 72140069 -51936103 - RSINE1 SINE B4 0 165 108 3 1135 28 29 0 0 chr9 72140071 72140106 -51936066 + AT_rich Low_complexity Low_complexity 1 35 0 3 1135 1624 5 0 49 chr9 72140155 72140358 -51935814 - B2_Mm1a SINE B2 0 193 1 3 1135 314 318 54 31 chr9 72141154 72141284 -51934888 - RSINE1 SINE B4 -27 138 6 3 1135 252 380 0 0 chr9 72141352 72141423 -51934749 - ID4_ SINE ID -9 74 4 3 1135 311 312 0 0 chr9 72141514 72141594 -51934578 - ID4_ SINE ID -1 82 3 3 1135 1323 105 5 0 chr9 72141715 72141906 -51934266 + B2_Mm1t SINE B2 1 192 -1 3 1135 22 35 0 0 chr9 72141914 72141943 -51934229 + AT_rich Low_complexity Low_complexity 1 29 0 3 1135 28 29 0 0 chr9 72141979 72142014 -51934158 + AT_rich Low_complexity Low_complexity 1 35 0 3 1135 243 0 0 0 chr9 72142081 72142108 -51934064 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1135 305 326 34 82 chr9 72142108 72142255 -51933917 - ID_B1 SINE B4 0 224 85 3 1135 655 114 17 9 chr9 72142278 72142393 -51933779 - Lx LINE L1 0 6654 6539 3 1135 362 316 42 0 chr9 72142743 72142838 -51933334 - PB1D10 SINE Alu -6 111 13 3 1135 21 0 0 0 chr9 72142850 72142871 -51933301 + AT_rich Low_complexity Low_complexity 1 21 0 3 1135 735 344 10 84 chr9 72143205 72143451 -51932721 - B4A SINE B4 -4 288 54 3 1135 1416 49 22 0 chr9 72143451 72143636 -51932536 - B2_Mm2 SINE B2 -5 190 2 3 1135 735 344 10 84 chr9 72143636 72143700 -51932472 - B4A SINE B4 -239 53 1 3 1135 21 36 0 0 chr9 72144081 72144109 -51932063 + AT_rich Low_complexity Low_complexity 1 28 0 3 1135 462 335 25 6 chr9 72144218 72144380 -51931792 - MLT1C LTR MaLR 0 467 303 3 1135 579 246 153 0 chr9 72144904 72145087 -51931085 - B3 SINE B2 -4 212 2 3 1135 21 57 0 0 chr9 72145257 72145292 -51930880 + AT_rich Low_complexity Low_complexity 1 35 0 3 1135 497 197 87 32 chr9 72145304 72145430 -51930742 - B1_Mur4 SINE Alu -13 137 5 3 1135 271 324 107 45 chr9 72145617 72145637 -51930535 - B3A SINE B2 0 198 10 3 1135 764 250 19 38 chr9 72145637 72145795 -51930377 - RSINE1 SINE B4 0 165 11 3 1135 416 220 8 76 chr9 72147330 72147448 -51928724 + PB1D9 SINE Alu 1 110 -10 3 1135 681 291 20 5 chr9 72148320 72148520 -51927652 - B3 SINE B2 -12 204 2 3 1135 219 36 0 0 chr9 72148663 72148691 -51927481 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1135 1048 80 0 0 chr9 72148691 72148828 -51927344 - B1_Mm SINE Alu -10 137 1 3 1135 377 276 94 72 chr9 72150189 72150369 -51925803 - MIRb SINE MIR -8 260 77 3 1135 729 254 124 72 chr9 72150503 72150922 -51925250 + Charlie1a DNA MER1_type 70 510 -945 3 1135 583 318 55 58 chr9 72150943 72151290 -51924882 - MLT1E LTR MaLR -29 624 279 3 1135 851 152 22 0 chr9 72151293 72151431 -51924741 - B1_Mus2 SINE Alu -6 141 1 3 1135 737 203 0 7 chr9 72151471 72151610 -51924562 - B1_Mm SINE Alu -9 138 1 3 1135 260 376 12 0 chr9 72151701 72151786 -51924386 - MLT1E LTR MaLR -584 96 11 3 1135 760 260 138 31 chr9 72151787 72152295 -51923877 + Charlie1a DNA MER1_type 520 1081 -374 3 1135 525 255 151 87 chr9 72152296 72152502 -51923670 + ID_B1 SINE B4 6 224 0 3 1135 272 281 154 67 chr9 72152371 72152520 -51923652 - YREP_Mm Unknown Unknown -1521 291 130 3 1135 383 307 27 54 chr9 72152530 72152716 -51923456 + Charlie1a DNA MER1_type 1263 1443 -12 3 1135 215 254 109 16 chr9 72153352 72153416 -51922756 - MIRc SINE MIR -124 144 75 3 1135 180 0 0 0 chr9 72153658 72153678 -51922494 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1135 456 274 179 0 chr9 72154333 72154450 -51921722 - ID_B1 SINE B4 -9 215 78 3 1135 182 62 0 30 chr9 72154450 72154483 -51921689 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 3 1135 263 68 0 64 chr9 72154808 72154855 -51921317 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1135 1175 54 0 0 chr9 72154855 72155002 -51921170 - B1_Mm SINE Alu 0 147 1 3 1135 22 35 0 0 chr9 72155289 72155318 -51920854 + AT_rich Low_complexity Low_complexity 1 29 0 3 1135 686 275 0 7 chr9 72156295 72156438 -51919734 + RSINE1 SINE B4 4 145 -20 3 1135 615 314 0 0 chr9 72156511 72156648 -51919524 + B1F SINE Alu 5 141 -8 3 1135 664 323 0 6 chr9 72157712 72157874 -51918298 + RSINE1 SINE B4 5 165 0 3 1135 259 352 121 36 chr9 72158281 72158505 -51917667 - MIRb SINE MIR -8 260 18 3 1135 1361 55 33 0 chr9 72158643 72158825 -51917347 - B2_Mm1t SINE B2 -5 188 1 3 1135 772 176 14 22 chr9 72159176 72159315 -51916857 + B1_Mus2 SINE Alu 1 138 -9 3 1135 766 181 0 46 chr9 72159596 72159747 -51916425 - B1_Mur1 SINE Alu -4 145 2 3 1135 721 271 17 17 chr9 72160170 72160350 -51915822 + B3 SINE B2 1 180 -36 3 1135 23 0 0 0 chr9 72160363 72160386 -51915786 + AT_rich Low_complexity Low_complexity 1 23 0 3 1135 1253 20 0 0 chr9 72161335 72161482 -51914690 + B1_Mus2 SINE Alu 1 147 0 3 1135 265 301 82 24 chr9 72161539 72161624 -51914548 + RMER15 LTR ERVL 372 461 -114 3 1135 195 129 0 0 chr9 72162198 72162229 -51913943 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1135 1019 198 50 32 chr9 72162302 72162521 -51913651 - MTD LTR MaLR 0 419 197 4 1135 584 232 140 44 chr9 72162809 72163132 -51913040 + L1MA6 LINE L1 5887 6262 -38 4 1135 780 248 38 14 chr9 72163178 72163387 -51912785 + B3 SINE B2 1 214 -2 4 1135 1227 80 51 11 chr9 72163669 72163845 -51912327 + B2_Mm1t SINE B2 1 183 -10 4 1135 293 233 0 0 chr9 72164500 72164560 -51911612 - ID2 SINE ID -23 60 1 4 1135 21 0 0 0 chr9 72164676 72164697 -51911475 + AT_rich Low_complexity Low_complexity 1 21 0 4 1135 310 21 0 41 chr9 72164867 72164916 -51911256 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 1135 685 196 0 92 chr9 72164990 72165153 -51911019 - B1_Mur1 SINE Alu 0 149 2 4 1135 212 0 36 0 chr9 72165264 72165292 -51910880 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1135 327 336 0 0 chr9 72165555 72165665 -51910507 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 4 1135 965 178 0 18 chr9 72166541 72166707 -51909465 + RSINE1 SINE B4 3 165 0 4 1135 286 261 54 43 chr9 72168760 72168852 -51907320 - PB1D9 SINE Alu 0 120 28 4 1135 716 169 17 0 chr9 72169221 72169339 -51906833 + PB1D9 SINE Alu 1 120 0 4 1135 23 0 0 0 chr9 72170754 72170777 -51905395 + AT_rich Low_complexity Low_complexity 1 23 0 4 1135 517 258 97 55 chr9 72170977 72171215 -51904957 - MER58B DNA MER1_type -15 326 79 4 1135 1227 20 0 20 chr9 72172833 72172983 -51903189 - B1_Mus1 SINE Alu 0 148 2 4 1135 728 232 7 0 chr9 72173059 72173201 -51902971 - B1_Mus1 SINE Alu -5 143 1 4 1135 233 256 91 98 chr9 72174165 72174308 -51901864 - MT2B2 LTR ERVL -320 264 123 4 1135 1442 73 5 0 chr9 72174352 72174543 -51901629 - B2_Mm1t SINE B2 0 193 2 4 1135 590 199 133 12 chr9 72174936 72175109 -51901063 - ORR1D1 LTR MaLR -20 354 161 4 1135 33 25 0 0 chr9 72175470 72175510 -51900662 + AT_rich Low_complexity Low_complexity 1 40 0 4 1135 837 255 48 5 chr9 72175513 72175702 -51900470 - B3 SINE B2 -19 197 1 4 1135 265 280 21 0 chr9 72175718 72175811 -51900361 - L1MA5 LINE L1 -11 6289 6195 4 1135 391 272 33 0 chr9 72175832 72175924 -51900248 - MER3 DNA MER1_type -114 95 1 4 1135 344 279 0 0 chr9 72176062 72176141 -51900031 - B3 SINE B2 -136 80 2 4 1135 813 179 14 0 chr9 72176264 72176409 -51899763 - B1_Mur2 SINE Alu -2 147 1 4 1135 819 203 77 6 chr9 72176474 72176657 -51899515 - B3 SINE B2 -19 197 2 4 1135 189 260 19 39 chr9 72177265 72177317 -51898855 + L2c LINE L2 3289 3339 -48 4 1135 23 33 0 0 chr9 72179060 72179090 -51897082 + AT_rich Low_complexity Low_complexity 1 30 0 4 1135 22 35 0 0 chr9 72179458 72179487 -51896685 + AT_rich Low_complexity Low_complexity 1 29 0 4 1135 536 270 29 69 chr9 72179875 72180050 -51896122 - B3A SINE B2 0 198 31 4 1135 23 0 0 0 chr9 72180055 72180078 -51896094 + AT_rich Low_complexity Low_complexity 1 23 0 4 1135 206 86 0 54 chr9 72180147 72180184 -51895988 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1135 454 265 84 23 chr9 72180862 72181138 -51895034 - L1M2 LINE L1 -1507 4636 4324 4 1135 375 264 17 43 chr9 72181178 72181293 -51894879 - PB1D10 SINE Alu -5 112 1 4 1135 27 0 0 0 chr9 72181531 72181558 -51894614 + AT_rich Low_complexity Low_complexity 1 27 0 4 1135 387 282 59 17 chr9 72181856 72181975 -51894197 - MER5A DNA MER1_type -59 130 7 4 1135 790 246 0 55 chr9 72182414 72182595 -51893577 + B3 SINE B2 43 213 -3 4 1135 216 352 114 0 chr9 72182628 72182733 -51893439 + PB1 SINE Alu 9 125 -2 4 1135 802 216 74 57 chr9 72183012 72183242 -51892930 - MTE2b LTR MaLR 0 379 146 4 1135 427 279 221 34 chr9 72183271 72183795 -51892377 - L1MB8 LINE L1 -30 6148 5527 4 1135 1045 86 0 0 chr9 72183804 72183944 -51892228 + B1_Mus2 SINE Alu 1 140 -7 4 1135 238 167 0 0 chr9 72184017 72184053 -51892119 - U2 snRNA snRNA -152 36 1 4 1135 299 59 0 0 chr9 72184475 72184523 -51891649 - B1_Mur4 SINE Alu 0 150 102 4 1135 882 245 20 20 chr9 72185012 72185216 -51890956 - B3 SINE B2 -12 204 1 4 1135 771 182 35 0 chr9 72185252 72185395 -51890777 - B1_Mur3 SINE Alu -1 148 1 4 1135 185 302 79 0 chr9 72187399 72187462 -51888710 - MIRc SINE MIR -109 159 92 4 1135 23 0 0 0 chr9 72187929 72187952 -51888220 + AT_rich Low_complexity Low_complexity 1 23 0 4 1135 22 0 0 0 chr9 72188401 72188423 -51887749 + AT_rich Low_complexity Low_complexity 1 22 0 4 1135 29 28 0 0 chr9 72188874 72188910 -51887262 + AT_rich Low_complexity Low_complexity 1 36 0 4 1135 556 322 133 50 chr9 72189333 72189634 -51886538 - L2a LINE L2 0 3426 3101 4 1135 1074 16 0 0 chr9 72189671 72189795 -51886377 + (TTC)n Simple_repeat Simple_repeat 2 125 0 4 1135 507 263 59 0 chr9 72190052 72190170 -51886002 + B1_Mur1 SINE Alu 24 148 -1 4 1135 27 29 0 0 chr9 72190282 72190316 -51885856 + AT_rich Low_complexity Low_complexity 1 34 0 4 1135 230 387 51 23 chr9 72190764 72190941 -51885231 + MIR SINE MIR 13 194 -68 4 1135 186 373 114 38 chr9 72191505 72191689 -51884483 + MIRb SINE MIR 14 211 -57 4 1135 225 197 0 0 chr9 72191800 72191861 -51884311 + (CTG)n Simple_repeat Simple_repeat 1 61 0 4 1135 775 182 29 0 chr9 72192533 72192670 -51883502 + B1_Mur1 SINE Alu 3 143 -6 4 1135 216 0 0 0 chr9 72194101 72194125 -51882047 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1135 193 365 134 29 chr9 72194606 72194815 -51881357 - MIR SINE MIR 0 262 32 4 1135 205 324 14 14 chr9 72195240 72195312 -51880860 + MIR SINE MIR 81 152 -56 4 1135 21 0 0 0 chr9 72195822 72195843 -51880329 + AT_rich Low_complexity Low_complexity 1 21 0 4 1135 1062 100 106 0 chr9 72196598 72196758 -51879414 - B2_Mm2 SINE B2 -17 178 2 4 1135 22 67 0 16 chr9 72197836 72197883 -51878289 + AT_rich Low_complexity Low_complexity 1 47 0 4 1135 768 43 248 8 chr9 72197883 72198000 -51878172 + B1_Mus2 SINE Alu 2 146 -1 4 1135 22 67 0 16 chr9 72198000 72198013 -51878159 + AT_rich Low_complexity Low_complexity 1 13 0 4 1135 216 309 14 14 chr9 72199028 72199097 -51877075 - ID4_ SINE ID -1 82 14 4 1135 243 0 0 0 chr9 72199754 72199781 -51876391 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1135 1144 68 0 14 chr9 72199973 72200121 -51876051 - B1_Mus2 SINE Alu 0 147 2 4 1135 270 0 0 0 chr9 72200144 72200174 -51875998 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1135 948 75 245 7 chr9 72200197 72200344 -51875828 + B2_Mm2 SINE B2 1 182 -13 4 1135 180 0 0 0 chr9 72200344 72200364 -51875808 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 4 1135 357 293 57 29 chr9 72200364 72200610 -51875562 - L1MCa LINE L1 -2627 3694 3442 4 1135 23 78 0 0 chr9 72200721 72200772 -51875400 + AT_rich Low_complexity Low_complexity 1 51 0 4 1135 307 271 146 77 chr9 72201217 72201437 -51874735 - L1MCa LINE L1 -5332 1176 942 4 1135 963 218 30 15 chr9 72201493 72201693 -51874479 + B3 SINE B2 2 204 -12 4 1135 887 253 46 5 chr9 72201721 72201916 -51874256 + B3 SINE B2 3 205 -11 4 1135 919 259 66 19 chr9 72201955 72202226 -51873946 + B4A SINE B4 5 288 -4 4 1135 693 258 15 35 chr9 72202723 72202920 -51873252 - B3A SINE B2 -5 193 1 4 1135 406 313 66 6 chr9 72203041 72203208 -51872964 - MER96B DNA hAT 0 417 241 4 1135 22 0 0 0 chr9 72203450 72203472 -51872700 + AT_rich Low_complexity Low_complexity 1 22 0 4 1135 303 286 92 67 chr9 72203815 72204010 -51872162 - L1MDa LINE L1 -5158 1475 1276 4 1135 24 0 0 0 chr9 72205563 72205587 -51870585 + AT_rich Low_complexity Low_complexity 1 24 0 4 1135 845 181 0 26 chr9 72205612 72205765 -51870407 - B1_Mur3 SINE Alu 0 149 1 4 1135 313 291 0 11 chr9 72206333 72206420 -51869752 - Charlie1a DNA MER1_type -1214 241 156 4 1135 722 202 0 0 chr9 72207648 72207772 -51868400 - B1_Mur2 SINE Alu -25 124 1 4 1135 495 0 0 0 chr9 72207959 72208014 -51868158 + (TGG)n Simple_repeat Simple_repeat 3 57 0 4 1135 252 86 0 0 chr9 72208014 72208049 -51868123 + (GGA)n Simple_repeat Simple_repeat 3 37 0 4 1135 224 300 0 0 chr9 72209219 72209279 -51866893 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 4 1135 21 0 0 0 chr9 72211410 72211431 -51864741 + AT_rich Low_complexity Low_complexity 1 21 0 4 1135 1181 55 0 0 chr9 72212611 72212757 -51863415 + B1_Mus2 SINE Alu 2 147 0 4 1135 22 0 0 0 chr9 72212757 72212779 -51863393 + AT_rich Low_complexity Low_complexity 1 22 0 4 1135 522 252 48 77 chr9 72212925 72213093 -51863079 - RSINE1 SINE B4 0 165 3 4 1135 180 339 51 0 chr9 72213257 72213316 -51862856 - MIRb SINE MIR -192 76 15 4 1135 1151 81 0 0 chr9 72213368 72213516 -51862656 + B1_Mus1 SINE Alu 1 148 0 4 1135 1198 94 123 0 chr9 72213644 72213847 -51862325 - Lx2 LINE L1 0 6997 6770 4 1135 845 108 108 0 chr9 72213853 72214041 -51862131 - Lx2 LINE L1 -483 6514 6398 4 1135 388 309 28 9 chr9 72214069 72214177 -51861995 + PB1D10 SINE Alu 2 111 -6 4 1135 492 345 39 17 chr9 72214427 72214607 -51861565 + B4A SINE B4 27 210 -82 4 1135 392 248 71 40 chr9 72214839 72214965 -51861207 - B3A SINE B2 -39 159 30 4 1135 324 342 51 0 chr9 72215328 72215407 -51860765 + B3A SINE B2 83 165 -33 5 1135 1378 75 32 5 chr9 72215413 72215602 -51860570 - B2_Mm2 SINE B2 0 195 2 5 1135 330 262 78 16 chr9 72215630 72215758 -51860414 - L1MB5 LINE L1 -9 6165 6030 5 1135 323 60 29 29 chr9 72215808 72215877 -51860295 + (TTTTG)n Simple_repeat Simple_repeat 1 69 0 5 1135 740 59 244 0 chr9 72215877 72215996 -51860176 - B1_Mus1 SINE Alu 0 148 1 5 1135 1067 257 147 7 chr9 72216088 72216511 -51859661 + L1MA9 LINE L1 4487 4968 -1172 5 1135 249 175 0 0 chr9 72216523 72216563 -51859609 + ORR1A3 LTR MaLR 287 326 0 5 1135 999 248 67 118 chr9 72216669 72217025 -51859147 + MTE2a LTR MaLR 1 338 -41 5 1135 1184 109 26 5 chr9 72217034 72217227 -51858945 + Lx5 LINE L1 3652 3848 -2029 5 1135 1226 28 0 7 chr9 72217259 72217405 -51858767 + B1_Mus2 SINE Alu 1 145 -2 5 1135 309 127 0 0 chr9 72217418 72217473 -51858699 + Lx5 LINE L1 4596 4650 -1227 5 1135 1011 106 50 0 chr9 72217474 72217634 -51858538 - L1_Mur2 LINE L1 -436 5441 5274 5 1135 7895 154 93 9 chr9 72217634 72219849 -51856323 + Lx5 LINE L1 4649 7050 0 5 1135 242 208 19 0 chr9 72219858 72219911 -51856261 + MTE2a LTR MaLR 326 379 0 5 1135 1113 248 92 40 chr9 72219911 72220258 -51855914 + L1MA9 LINE L1 5408 5785 -527 5 1135 1112 94 76 0 chr9 72220258 72220429 -51855743 + B2_Mm2 SINE B2 1 184 -11 5 1135 1113 248 92 40 chr9 72220429 72220484 -51855688 + L1MA9 LINE L1 5786 5831 -481 5 1135 568 314 13 38 chr9 72220493 72220652 -51855520 + RSINE1 SINE B4 11 165 0 5 1136 720 164 0 24 chr9 72220691 72220816 -51855356 + B1_Mus1 SINE Alu 1 122 -26 5 1136 1309 61 0 11 chr9 72220819 72221001 -51855171 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1136 239 173 0 19 chr9 72221001 72221054 -51855118 + GA-rich Low_complexity Low_complexity 1 52 0 5 1136 393 22 0 0 chr9 72221472 72221518 -51854654 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1136 488 204 135 130 chr9 72222003 72222195 -51853977 - B3A SINE B2 -5 193 1 5 1136 386 209 19 50 chr9 72222348 72222466 -51853706 + B1_Mur3 SINE Alu 1 149 0 5 1136 675 169 5 43 chr9 72222478 72222664 -51853508 + GA-rich Low_complexity Low_complexity 2 180 0 5 1136 545 258 81 6 chr9 72222696 72222856 -51853316 + ORR1C2 LTR MaLR 12 183 -191 5 1136 203 218 0 18 chr9 72222856 72222912 -51853260 + CT-rich Low_complexity Low_complexity 4 58 0 5 1136 1129 152 29 10 chr9 72222926 72223132 -51853040 + ORR1C2 LTR MaLR 175 384 0 5 1136 231 300 130 0 chr9 72223132 72223232 -51852940 + L1MA9 LINE L1 5885 5997 -174 5 1136 201 39 0 0 chr9 72223268 72223294 -51852878 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1136 243 61 0 0 chr9 72223289 72223322 -51852850 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1136 403 281 197 63 chr9 72223342 72223581 -51852591 - B4A SINE B4 -21 271 1 5 1136 766 233 0 0 chr9 72223606 72223752 -51852420 + B1_Mur3 SINE Alu 2 147 -2 5 1136 270 182 90 90 chr9 72223775 72223908 -51852264 + L1MA9 LINE L1 6023 6155 -16 5 1136 240 163 0 0 chr9 72223941 72223984 -51852188 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1136 335 210 0 105 chr9 72224255 72224388 -51851784 - B3A SINE B2 -16 182 64 5 1136 1192 68 0 0 chr9 72224436 72224584 -51851588 + B1_Mus1 SINE Alu 1 148 0 5 1136 251 204 19 0 chr9 72224597 72224651 -51851521 - B2_Mm2 SINE B2 -139 56 2 5 1136 215 203 16 0 chr9 72225497 72225561 -51850611 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 5 1136 307 321 97 9 chr9 72225593 72225706 -51850466 - B1F SINE Alu -26 123 1 5 1136 838 206 12 6 chr9 72225706 72225770 -51850402 - ID SINE ID -142 82 18 5 1136 1226 54 0 0 chr9 72226062 72226209 -51849963 - B1_Mus2 SINE Alu 0 147 1 5 1136 1783 172 62 53 chr9 72226467 72226869 -51849303 + MTC LTR MaLR 1 394 -27 5 1136 250 270 68 0 chr9 72226896 72226970 -51849202 - L1M3 LINE L1 -406 5783 5705 5 1136 519 258 147 4 chr9 72226973 72227365 -51848807 - L1M3 LINE L1 -690 5481 5018 5 1136 537 222 168 12 chr9 72227365 72227538 -51848634 + B3 SINE B2 14 213 -3 5 1136 272 223 94 21 chr9 72227958 72228054 -51848118 - RLTR23 LTR ERV1 -4 426 324 5 1136 1063 248 45 119 chr9 72228178 72228500 -51847672 - L1_Rod LINE L1 -1613 4234 3904 5 1136 1136 71 0 0 chr9 72228500 72228640 -51847532 + B1_Mm SINE Alu 1 140 -7 5 1136 1063 248 45 119 chr9 72228640 72228789 -51847383 - L1_Rod LINE L1 -1944 3903 3798 5 1136 23 0 0 0 chr9 72228789 72228812 -51847360 + AT_rich Low_complexity Low_complexity 1 23 0 5 1136 855 217 6 6 chr9 72228835 72229011 -51847161 + B3 SINE B2 27 202 -14 5 1136 457 63 34 91 chr9 72229150 72229325 -51846847 + (CAAA)n Simple_repeat Simple_repeat 4 168 0 5 1136 1751 112 40 56 chr9 72229563 72229886 -51846286 + ORR1A3 LTR MaLR 1 318 -8 5 1136 764 220 51 0 chr9 72229890 72230067 -51846105 + ID_B1 SINE B4 37 222 -2 5 1136 701 223 0 13 chr9 72230689 72230839 -51845333 + B1_Mur1 SINE Alu 2 149 0 5 1136 252 122 0 0 chr9 72230839 72230880 -51845292 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1136 901 81 12 47 chr9 72230881 72231050 -51845122 + (GGGAA)n Simple_repeat Simple_repeat 4 166 0 5 1136 259 196 36 0 chr9 72231465 72231521 -51844651 + U5 snRNA snRNA 1 58 -58 5 1136 772 234 42 32 chr9 72231702 72231892 -51844280 + B3 SINE B2 1 192 -24 5 1136 400 315 187 6 chr9 72232116 72232464 -51843708 + L1MD LINE L1 4278 4688 -1458 5 1136 376 306 48 16 chr9 72232480 72232666 -51843506 + L1MD LINE L1 4809 5000 -1146 5 1136 422 225 45 23 chr9 72232904 72233036 -51843136 + L1MD LINE L1 5540 5674 -568 5 1136 306 279 149 7 chr9 72233650 72233791 -51842381 + ID_B1 SINE B4 2 162 -62 5 1136 362 329 7 7 chr9 72234075 72234222 -51841950 - RSINE1 SINE B4 -16 149 3 5 1136 1000 308 42 100 chr9 72234257 72235076 -51841096 + L1M4 LINE L1 4344 5114 -1032 5 1136 892 57 0 0 chr9 72235101 72235223 -51840949 + B1_Mus1 SINE Alu 27 148 0 5 1136 736 167 58 0 chr9 72235309 72235447 -51840725 + B1_Mus1 SINE Alu 2 147 -1 5 1136 243 125 0 0 chr9 72235447 72235487 -51840685 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1136 493 275 0 22 chr9 72235766 72235900 -51840272 - ID_B1 SINE B4 0 224 94 5 1136 366 241 80 29 chr9 72235911 72236048 -51840124 - L1MA6 LINE L1 -7 6293 6150 5 1136 813 199 116 16 chr9 72236063 72236252 -51839920 - B3 SINE B2 -5 211 4 5 1136 1775 296 149 47 chr9 72236411 72237799 -51838373 - L1M2 LINE L1 -756 5387 3858 5 1136 495 118 0 0 chr9 72237956 72238032 -51838140 + (TCCC)n Simple_repeat Simple_repeat 1 76 0 5 1136 682 224 76 6 chr9 72238629 72238800 -51837372 + B4A SINE B4 1 183 -109 5 1136 543 324 70 46 chr9 72238886 72239145 -51837027 + B4A SINE B4 25 289 -3 5 1136 790 232 18 0 chr9 72239176 72239340 -51836832 + ID_B1 SINE B4 5 171 -53 5 1136 3879 219 55 7 chr9 72239474 72240300 -51835872 + Lx5 LINE L1 6179 7043 -7 5 1136 309 89 0 0 chr9 72241772 72241817 -51834355 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1136 269 26 0 26 chr9 72242493 72242532 -51833640 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1136 503 226 139 89 chr9 72242560 72242818 -51833354 + MLT1E1 LTR MaLR 354 654 0 5 1136 393 278 85 31 chr9 72242844 72242904 -51833268 + B1F1 SINE Alu 1 58 -91 5 1136 2325 170 109 21 chr9 72242904 72243390 -51832782 + RLTR24 LTR ERV1 1 529 0 5 1136 393 278 85 31 chr9 72243390 72243459 -51832713 + B1F1 SINE Alu 59 137 -12 5 1136 216 0 0 0 chr9 72243460 72243484 -51832688 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 5 1136 248 229 33 0 chr9 72243491 72243552 -51832620 + GA-rich Low_complexity Low_complexity 4 66 0 5 1136 636 14 0 0 chr9 72243666 72243739 -51832433 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1136 252 0 0 0 chr9 72244898 72244926 -51831246 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1136 1259 181 0 14 chr9 72246204 72246423 -51829749 - B3 SINE B2 0 216 1 5 1136 207 300 0 57 chr9 72246632 72246791 -51829381 + (CGAG)n Simple_repeat Simple_repeat 3 152 0 5 1136 622 314 59 4 chr9 72246821 72247074 -51829098 + RMER15-int LTR ERVL 1345 1611 -3388 5 1136 263 280 69 10 chr9 72248255 72248356 -51827816 - L1M5 LINE L1 -1510 4636 4530 5 1136 486 108 0 0 chr9 72248536 72248610 -51827562 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1136 1098 67 0 0 chr9 72249092 72249226 -51826946 + B1_Mm SINE Alu 1 134 -13 5 1136 186 71 0 0 chr9 72249226 72249254 -51826918 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1136 294 95 0 0 chr9 72249508 72249550 -51826622 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1136 243 0 0 0 chr9 72249584 72249611 -51826561 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1136 318 152 12 33 chr9 72249615 72249688 -51826484 - B2_Mm2 SINE B2 -95 121 47 5 1136 825 97 0 0 chr9 72249770 72249894 -51826278 - B2_Mm2 SINE B2 -70 125 2 5 1136 26 0 0 0 chr9 72249969 72249995 -51826177 + AT_rich Low_complexity Low_complexity 1 26 0 5 1136 227 224 149 0 chr9 72250001 72250068 -51826104 - Lx8 LINE L1 -7 7466 7390 5 1136 419 195 186 0 chr9 72250449 72250562 -51825610 + B1F2 SINE Alu 9 142 -7 5 1136 225 65 0 0 chr9 72250638 72250669 -51825503 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1136 441 95 0 0 chr9 72250954 72251017 -51825155 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1136 341 265 25 63 chr9 72251064 72251223 -51824949 - B4A SINE B4 -144 148 2 5 1136 766 233 73 11 chr9 72252349 72252540 -51823632 + ID_B1 SINE B4 1 203 -21 5 1136 372 205 23 0 chr9 72252544 72252676 -51823496 + GA-rich Low_complexity Low_complexity 1 134 0 5 1136 689 269 49 31 chr9 72254078 72254298 -51821874 + B4A SINE B4 7 230 -62 5 1136 527 229 82 0 chr9 72254298 72254420 -51821752 + RSINE1 SINE B4 3 134 -31 5 1136 495 220 0 0 chr9 72254525 72254693 -51821479 + (CA)n Simple_repeat Simple_repeat 1 168 0 5 1136 601 229 158 22 chr9 72255125 72255308 -51820864 - B3 SINE B2 -7 209 2 5 1136 23 33 0 0 chr9 72255495 72255525 -51820647 + AT_rich Low_complexity Low_complexity 1 30 0 5 1136 271 186 29 0 chr9 72255695 72255765 -51820407 + (TATAA)n Simple_repeat Simple_repeat 4 75 0 5 1136 902 209 90 25 chr9 72258374 72258619 -51817553 - RCHARR1 DNA MER1_type -303 671 411 6 1136 1310 85 11 0 chr9 72258627 72258803 -51817369 + B2_Mm1t SINE B2 2 179 -14 6 1136 375 84 319 0 chr9 72258834 72258940 -51817232 + B2_Mm2 SINE B2 46 190 -5 6 1136 1057 258 53 65 chr9 72258935 72259353 -51816819 - RCHARR1 DNA MER1_type -554 420 8 6 1136 698 288 0 78 chr9 72260587 72260817 -51815355 + ID_B1 SINE B4 13 224 0 6 1136 765 262 26 5 chr9 72261320 72261512 -51814660 - B3A SINE B2 -2 196 1 6 1136 291 203 0 127 chr9 72262033 72262112 -51814060 + ID4_ SINE ID 2 70 -13 6 1136 718 224 94 6 chr9 72262054 72262234 -51813938 + ID_B1 SINE B4 14 209 -15 6 1136 1179 117 0 0 chr9 72262395 72262575 -51813597 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1136 918 143 6 11 chr9 72262575 72262752 -51813420 + CT-rich Low_complexity Low_complexity 2 177 0 6 1136 182 208 21 0 chr9 72262781 72262829 -51813343 + T-rich Low_complexity Low_complexity 4 52 0 6 1136 284 299 30 0 chr9 72262849 72262916 -51813256 - B3 SINE B2 -25 191 123 6 1136 488 30 15 0 chr9 72262998 72263064 -51813108 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1136 262 267 58 19 chr9 72263226 72263329 -51812843 - LTR16A LTR ERVL -98 353 247 6 1136 966 245 132 18 chr9 72264597 72264992 -51811180 + Tigger1 DNA MER2_type 811 1250 -1168 6 1136 513 231 52 30 chr9 72264990 72265124 -51811048 + ORR1E LTR MaLR 5 141 -229 6 1136 1397 94 0 47 chr9 72265139 72265350 -51810822 + L1_Mus1 LINE L1 6358 6558 -9 6 1136 1709 31 0 0 chr9 72265350 72265543 -51810629 + B2_Mm1t SINE B2 1 193 0 6 1136 340 134 12 24 chr9 72265558 72265642 -51810530 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 6 1136 787 270 56 12 chr9 72265643 72265894 -51810278 + ORR1E LTR MaLR 98 359 0 6 1136 1088 274 86 78 chr9 72265901 72266092 -51810080 + Tigger1 DNA MER2_type 1252 1435 -983 6 1136 225 0 0 0 chr9 72266092 72266117 -51810055 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 6 1136 1088 274 86 78 chr9 72266117 72266276 -51809896 + Tigger1 DNA MER2_type 1436 1602 -816 6 1136 1189 214 77 53 chr9 72266276 72266651 -51809521 - ORR1C2 LTR MaLR 0 384 1 6 1136 1088 274 86 78 chr9 72266651 72266929 -51809243 + Tigger1 DNA MER2_type 1603 1886 -532 6 1136 1184 61 18 0 chr9 72266953 72267117 -51809055 - B2_Mm2 SINE B2 -7 188 22 6 1136 1114 138 16 0 chr9 72267117 72267305 -51808867 + RLTR31A_Mm LTR ERVK 100 290 -294 6 1136 458 321 101 91 chr9 72267329 72267504 -51808668 + Tigger1 DNA MER2_type 1899 2099 -319 6 1136 1167 69 0 0 chr9 72267504 72267649 -51808523 + B1_Mm SINE Alu 3 147 0 6 1136 458 321 101 91 chr9 72267649 72267807 -51808365 + Tigger1 DNA MER2_type 2100 2239 -179 6 1136 694 220 21 0 chr9 72267807 72267948 -51808224 - B1_Mur1 SINE Alu -3 146 3 6 1136 458 321 101 91 chr9 72267948 72268127 -51808045 + Tigger1 DNA MER2_type 2240 2416 -2 6 1136 334 341 64 41 chr9 72268757 72269023 -51807149 + B4A SINE B4 2 273 -19 6 1136 386 291 9 9 chr9 72269533 72269644 -51806528 - MIR3 SINE MIR -11 197 87 6 1136 347 281 48 10 chr9 72269771 72269875 -51806297 - PB1D9 SINE Alu 0 120 13 6 1136 634 250 75 15 chr9 72270452 72270651 -51805521 + LTR16B1 LTR ERVL 195 405 -75 6 1136 775 215 23 23 chr9 72270655 72270831 -51805341 + B3A SINE B2 23 198 0 6 1136 267 31 0 0 chr9 72271827 72271859 -51804313 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 1136 548 160 0 25 chr9 72271873 72271992 -51804180 + B1_Mur1 SINE Alu 30 135 -14 6 1136 630 71 0 0 chr9 72272525 72272609 -51803563 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1136 367 202 379 0 chr9 72272623 72272739 -51803433 - B3A SINE B2 -38 160 1 6 1136 380 182 26 13 chr9 72272772 72272858 -51803314 - B1_Mur1 SINE Alu -1 148 62 6 1136 824 228 6 12 chr9 72273972 72274136 -51802036 - RSINE1 SINE B4 0 165 3 6 1136 695 276 119 85 chr9 72274156 72274686 -51801486 + L1MC2 LINE L1 5789 6336 -8 6 1136 620 132 32 13 chr9 72275283 72275437 -51800735 + (TG)n Simple_repeat Simple_repeat 2 158 0 6 1136 282 269 94 145 chr9 72275462 72275718 -51800454 - B4A SINE B4 -11 281 39 6 1136 740 215 103 20 chr9 72276838 72277001 -51799171 + B3 SINE B2 1 167 -49 6 1136 411 21 0 0 chr9 72277001 72277049 -51799123 + (CATA)n Simple_repeat Simple_repeat 4 51 0 6 1136 740 215 103 20 chr9 72277049 72277080 -51799092 + B3 SINE B2 168 210 -6 6 1136 1522 58 10 5 chr9 72277236 72277428 -51798744 - B2_Mm2 SINE B2 -1 194 2 6 1136 1162 75 7 0 chr9 72277432 72277578 -51798594 - B1_Mus2 SINE Alu 0 147 1 6 1136 338 96 385 0 chr9 72277705 72277809 -51798363 + BGLII_B LTR ERVK 19 162 -279 6 1136 547 270 75 64 chr9 72277809 72278090 -51798082 + RLTR31_Mur LTR ERVK 265 548 -5 6 1136 27 0 0 0 chr9 72278364 72278391 -51797781 + AT_rich Low_complexity Low_complexity 1 27 0 6 1136 198 0 0 0 chr9 72278435 72278457 -51797715 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1136 212 167 0 0 chr9 72278533 72278575 -51797597 + A-rich Low_complexity Low_complexity 1 42 0 6 1136 237 163 0 0 chr9 72278918 72278967 -51797205 + CT-rich Low_complexity Low_complexity 3 51 0 6 1136 630 232 0 68 chr9 72279651 72279827 -51796345 + B3A SINE B2 33 196 -2 6 1136 23 33 0 0 chr9 72280527 72280557 -51795615 + AT_rich Low_complexity Low_complexity 1 30 0 6 1136 236 309 28 9 chr9 72280649 72280757 -51795415 + L1MCa LINE L1 930 1039 -5469 6 1136 841 221 54 20 chr9 72280763 72280966 -51795206 + B3 SINE B2 1 210 -6 6 1136 789 219 19 0 chr9 72281359 72281514 -51794658 - RSINE1 SINE B4 -5 160 3 6 1136 425 257 126 16 chr9 72281902 72282084 -51794088 + L1MCa LINE L1 2799 3000 -3321 6 1136 879 207 158 12 chr9 72282120 72282374 -51793798 + ORR1D1 LTR MaLR 84 374 0 6 1136 315 234 205 13 chr9 72282469 72282703 -51793469 + L1MCa LINE L1 3126 3404 -2917 6 1136 619 300 56 58 chr9 72282964 72283428 -51792744 + L1MA6 LINE L1 4674 5136 -1007 6 1136 895 118 46 0 chr9 72283452 72283605 -51792567 - URR1B DNA MER1_type 0 225 66 6 1136 276 281 12 0 chr9 72283775 72283857 -51792315 + MTD LTR MaLR 13 95 -324 6 1136 643 202 138 23 chr9 72283873 72284091 -51792081 + MTD LTR MaLR 175 417 -2 6 1136 1168 62 7 0 chr9 72284153 72284299 -51791873 + B1_Mm SINE Alu 1 147 0 6 1136 1028 290 93 30 chr9 72284419 72284859 -51791313 + L1MA6 LINE L1 5395 5862 -438 6 1136 692 237 5 75 chr9 72284907 72285094 -51791078 + B3 SINE B2 1 174 -42 6 1136 226 186 34 0 chr9 72285187 72285246 -51790926 + L1MB2 LINE L1 5948 6008 -163 6 1136 723 52 137 8 chr9 72285607 72285724 -51790448 - B1_Mus1 SINE Alu 0 148 17 6 1136 272 224 13 26 chr9 72285735 72285813 -51790359 + MTD LTR MaLR 112 188 -231 6 1136 215 241 205 0 chr9 72285989 72286072 -51790100 + B3A SINE B2 2 101 -97 6 1136 975 201 50 5 chr9 72288603 72288803 -51787369 + B3 SINE B2 1 209 -7 6 1136 444 169 0 57 chr9 72288872 72288960 -51787212 - ID4_ SINE ID 0 83 1 6 1136 614 281 88 82 chr9 72289341 72289705 -51786467 + MLT2B4 LTR ERVL 87 452 -104 6 1136 240 319 53 53 chr9 72289846 72290015 -51786157 - L1MD3 LINE L1 -10 7985 7817 6 1136 225 0 0 0 chr9 72290038 72290063 -51786109 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1136 219 146 0 0 chr9 72290467 72290508 -51785664 + (TTTTTA)n Simple_repeat Simple_repeat 6 46 0 6 1136 728 271 130 13 chr9 72290508 72290818 -51785354 - L1_Mus4 LINE L1 -537 5822 5488 6 1136 580 146 21 0 chr9 72290826 72290922 -51785250 - B1_Mus1 SINE Alu -50 98 1 6 1136 1425 186 169 0 chr9 72291467 72291817 -51784355 + MTD LTR MaLR 11 419 0 6 1136 342 0 0 0 chr9 72291854 72291892 -51784280 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1136 608 207 89 33 chr9 72292145 72292325 -51783847 - B3 SINE B2 -26 190 1 6 1136 306 239 42 0 chr9 72292934 72293005 -51783167 - ID SINE ID -149 75 2 6 1136 654 241 14 0 chr9 72293193 72293338 -51782834 - B1_Mur1 SINE Alu -1 148 2 6 1136 207 0 0 0 chr9 72293388 72293411 -51782761 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1136 1183 74 0 7 chr9 72293411 72293550 -51782622 - B1_Mus1 SINE Alu -9 139 1 6 1136 335 100 122 54 chr9 72294828 72294902 -51781270 - URR1B DNA MER1_type 0 225 147 6 1136 326 277 143 54 chr9 72295243 72295411 -51780761 - B3 SINE B2 -10 206 24 6 1136 302 246 28 14 chr9 72298202 72298286 -51777886 + L1M4 LINE L1 5702 5786 -403 6 1136 329 256 281 15 chr9 72299748 72299876 -51776296 + B3A SINE B2 19 181 -17 6 1136 180 0 0 0 chr9 72299876 72299896 -51776276 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1136 1112 79 70 43 chr9 72300042 72300227 -51775945 - B2_Mm2 SINE B2 -5 190 1 6 1136 234 221 49 49 chr9 72300244 72300325 -51775847 - PB1D7 SINE Alu 0 120 40 6 1136 184 30 61 0 chr9 72300721 72300754 -51775418 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1136 427 215 21 0 chr9 72300929 72301022 -51775150 - B4A SINE B4 -196 96 2 6 1136 886 112 22 0 chr9 72301702 72301836 -51774336 + B1_Mur4 SINE Alu 1 137 -13 6 1136 210 239 0 15 chr9 72302510 72302578 -51773594 + T-rich Low_complexity Low_complexity 4 70 0 6 1136 467 134 0 68 chr9 72304076 72304164 -51772008 + ID4_ SINE ID 2 83 0 6 1136 1328 111 16 0 chr9 72304272 72304461 -51771711 + B2_Mm2 SINE B2 2 193 -2 6 1136 270 81 0 0 chr9 72304934 72304971 -51771201 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 1136 830 185 138 0 chr9 72304971 72305160 -51771012 - ID_B1 SINE B4 -9 215 1 6 1136 470 261 173 14 chr9 72306490 72306704 -51769468 - L1M2 LINE L1 -1570 4573 4326 6 1136 285 322 33 0 chr9 72306704 72306718 -51769454 - ID_B1 SINE B4 -127 97 5 6 1136 314 303 0 0 chr9 72306718 72306794 -51769378 - ID4 SINE ID -3 80 5 6 1136 999 23 131 0 chr9 72306990 72307120 -51769052 + B1_Mus2 SINE Alu 1 147 0 6 1136 576 252 66 0 chr9 72307146 72307297 -51768875 - B3 SINE B2 -29 187 27 6 1136 561 165 191 0 chr9 72307320 72307435 -51768737 - B1_Mur4 SINE Alu -12 138 2 6 1136 1541 222 141 60 chr9 72307647 72308166 -51768006 - L1M2 LINE L1 -2086 4057 3501 6 1136 912 206 58 14 chr9 72308166 72308373 -51767799 - B3 SINE B2 0 216 1 6 1136 1541 222 141 60 chr9 72308373 72308576 -51767596 - L1M2 LINE L1 -2643 3500 3276 6 1136 207 100 0 0 chr9 72309461 72309491 -51766681 + (CGTG)n Simple_repeat Simple_repeat 2 31 0 7 1136 23 0 0 0 chr9 72309874 72309897 -51766275 + AT_rich Low_complexity Low_complexity 1 23 0 7 1136 870 276 161 25 chr9 72310446 72310925 -51765247 + L1M3 LINE L1 2279 2822 -3318 7 1136 254 323 75 69 chr9 72311115 72311288 -51764884 - ORR1E LTR MaLR -164 195 22 7 1136 309 228 89 89 chr9 72311468 72311670 -51764502 + L1M3 LINE L1 3141 3342 -2804 7 1136 475 337 76 3 chr9 72311655 72311959 -51764213 + L1M3 LINE L1 3988 4313 -1827 7 1136 570 274 92 0 chr9 72312233 72312397 -51763775 - B3 SINE B2 0 216 38 7 1136 189 107 0 0 chr9 72312414 72312442 -51763730 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1136 582 257 196 16 chr9 72312479 72312925 -51763247 + L1M3 LINE L1 5073 5593 -590 7 1136 207 0 0 0 chr9 72313085 72313108 -51763064 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1136 407 275 157 13 chr9 72313889 72314133 -51762039 + L1MC LINE L1 2615 2879 -3267 7 1136 2512 43 0 0 chr9 72314185 72314486 -51761686 - L1Md_T LINE L1 0 6582 6282 7 1136 1147 68 7 0 chr9 72314723 72314869 -51761303 + B1_Mus1 SINE Alu 2 148 0 7 1136 648 257 65 32 chr9 72314950 72315135 -51761037 + B3A SINE B2 1 191 -7 7 1136 528 230 168 15 chr9 72315244 72315447 -51760725 + L1M2 LINE L1 5425 5658 -642 7 1136 343 217 203 45 chr9 72315877 72316129 -51760043 + L1MC LINE L1 2940 3221 -2925 7 1136 603 215 28 108 chr9 72316915 72317129 -51759043 + B3A SINE B2 2 198 0 7 1136 1414 98 0 5 chr9 72317135 72317330 -51758842 + B2_Mm2 SINE B2 1 194 -1 7 1136 958 109 7 39 chr9 72318248 72318401 -51757771 + B1_Mur3 SINE Alu 2 149 0 7 1136 182 171 24 0 chr9 72318402 72318443 -51757729 + GA-rich Low_complexity Low_complexity 3 44 0 7 1136 377 229 16 139 chr9 72318581 72318703 -51757469 + B4A SINE B4 186 292 0 7 1136 315 0 0 0 chr9 72318747 72318782 -51757390 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1136 1211 55 0 0 chr9 72319743 72319889 -51756283 - B1_Mm SINE Alu 0 147 2 7 1136 522 264 26 46 chr9 72321005 72321156 -51755016 + RSINE1 SINE B4 3 150 -15 7 1136 1171 171 5 32 chr9 72321817 72322034 -51754138 - B3 SINE B2 -5 211 1 7 1136 452 268 0 0 chr9 72322144 72322256 -51753916 - PB1D10 SINE Alu -5 112 1 7 1136 416 218 101 36 chr9 72322879 72323017 -51753155 + B3 SINE B2 68 214 -2 7 1136 1634 21 11 5 chr9 72323034 72323225 -51752947 + B2_Mm1a SINE B2 2 193 0 7 1136 370 197 0 0 chr9 72323831 72323897 -51752275 - B1_Mur2 SINE Alu -51 98 33 7 1136 2087 0 0 0 chr9 72324281 72324509 -51751663 + L1Md_A LINE L1 6355 6582 0 7 1136 327 180 0 32 chr9 72324751 72324814 -51751358 - PB1D9 SINE Alu -58 62 2 7 1136 249 289 128 32 chr9 72325209 72325427 -51750745 + L1MB8 LINE L1 5937 6175 -3 7 1136 315 122 0 0 chr9 72326014 72326063 -51750109 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 1136 1130 68 20 0 chr9 72329400 72329547 -51746625 + B1_Mur4 SINE Alu 1 150 0 7 1136 503 242 135 31 chr9 72329806 72329998 -51746174 + B3 SINE B2 2 213 -3 7 1136 566 208 82 87 chr9 72330406 72330420 -51745752 - B2_Mm2 SINE B2 -1 194 181 7 1136 1522 54 16 0 chr9 72330420 72330605 -51745567 + B2_Mm2 SINE B2 1 188 -7 7 1136 789 187 29 25 chr9 72330605 72330785 -51745387 - B3 SINE B2 -15 180 1 7 1136 1108 201 14 9 chr9 72330834 72331045 -51745127 - B3 SINE B2 -4 212 1 7 1136 536 276 67 0 chr9 72331651 72331785 -51744387 + RSINE1 SINE B4 2 144 -21 7 1136 23 0 0 0 chr9 72332096 72332119 -51744053 + AT_rich Low_complexity Low_complexity 1 23 0 7 1136 604 248 80 7 chr9 72332305 72332455 -51743717 + RSINE1 SINE B4 1 161 -4 7 1136 228 86 0 0 chr9 72332481 72332516 -51743656 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1136 322 259 273 0 chr9 72333427 72333570 -51742602 + B3A SINE B2 2 183 -15 7 1136 1341 104 38 0 chr9 72334020 72334203 -51741969 + B2_Mm2 SINE B2 2 191 -4 7 1136 1547 73 5 0 chr9 72334205 72334396 -51741776 + B2_Mm2 SINE B2 2 193 -2 7 1136 1505 87 5 0 chr9 72335352 72335537 -51740635 + B2_Mm1t SINE B2 1 186 -7 7 1136 237 339 84 34 chr9 72336042 72336161 -51740011 + LTR79 LTR ERVL 55 179 -348 7 1136 320 269 90 28 chr9 72337588 72337733 -51738439 + ORR1E LTR MaLR 86 239 -120 7 1136 24 0 0 0 chr9 72337774 72337798 -51738374 + AT_rich Low_complexity Low_complexity 1 24 0 7 1136 1254 75 0 0 chr9 72337798 72337945 -51738227 - B1_Mm SINE Alu 0 147 1 7 1136 24 53 0 0 chr9 72338320 72338358 -51737814 + AT_rich Low_complexity Low_complexity 1 38 0 7 1136 1267 47 0 0 chr9 72338362 72338510 -51737662 + B1_Mus1 SINE Alu 1 148 0 7 1136 259 309 24 0 chr9 72338532 72338616 -51737556 - L2b LINE L2 -67 3359 3234 7 1136 517 189 25 59 chr9 72338621 72338739 -51737433 + PB1D9 SINE Alu 2 115 -5 7 1136 477 0 0 0 chr9 72339162 72339215 -51736957 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1136 357 296 177 0 chr9 72340319 72340505 -51735667 + L1MB8 LINE L1 4805 5023 -1123 7 1136 180 0 0 0 chr9 72340545 72340565 -51735607 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1136 507 291 38 45 chr9 72340600 72340644 -51735528 + L1MB8 LINE L1 5265 5304 -874 7 1136 1178 68 7 7 chr9 72340644 72340791 -51735381 + B1_Mus2 SINE Alu 1 147 0 7 1136 516 281 96 8 chr9 72340791 72341032 -51735140 + L1MB8 LINE L1 5291 5551 -620 7 1136 323 229 12 12 chr9 72341073 72341157 -51735015 + L1MB8 LINE L1 6069 6152 -26 7 1136 639 288 56 54 chr9 72341193 72341619 -51734553 + L1MC LINE L1 2269 2695 -3451 7 1136 437 262 83 65 chr9 72341665 72341884 -51734288 - MLT1C LTR MaLR -17 488 254 7 1136 562 289 121 34 chr9 72342088 72342353 -51733819 - B4A SINE B4 -4 288 1 7 1136 850 251 15 15 chr9 72342802 72342841 -51733331 - B3A SINE B2 0 198 161 7 1136 297 0 0 0 chr9 72342841 72342874 -51733298 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 7 1136 850 251 15 15 chr9 72342874 72343032 -51733140 - B3A SINE B2 -38 160 1 7 1136 2110 238 81 16 chr9 72343323 72343840 -51732332 - Lx5 LINE L1 -4 7046 6496 7 1136 555 149 0 22 chr9 72344054 72344143 -51732029 - B3 SINE B2 -129 87 1 7 1136 1547 224 18 15 chr9 72345670 72346009 -51730163 - MTE2a LTR MaLR -36 343 4 7 1136 182 318 94 61 chr9 72346378 72346519 -51729653 - MIR SINE MIR 0 262 116 7 1136 1257 54 0 13 chr9 72346519 72346669 -51729503 + B1_Mus1 SINE Alu 1 148 0 7 1136 182 318 94 61 chr9 72346669 72346708 -51729464 - MIR SINE MIR -147 115 77 7 1136 7213 115 21 9 chr9 72346710 72347731 -51728441 + ORR1A3-int LTR MaLR 854 1893 -70 7 1136 1120 102 0 0 chr9 72347731 72347878 -51728294 - B1_Mus1 SINE Alu 0 148 2 7 1136 7213 115 21 9 chr9 72347878 72347945 -51728227 + ORR1A3-int LTR MaLR 1894 1955 -8 7 1136 2205 85 9 70 chr9 72347943 72348284 -51727888 + ORR1A3 LTR MaLR 7 326 0 7 1136 276 30 0 0 chr9 72348626 72348659 -51727513 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1136 639 298 56 141 chr9 72348815 72349241 -51726931 - LTR16A1 LTR ERVL -17 439 50 7 1136 1669 220 28 17 chr9 72349705 72350061 -51726111 + MTE2b LTR MaLR 2 361 -18 7 1136 689 215 89 9 chr9 72350497 72350722 -51725450 + L1MA8 LINE L1 5996 6238 -53 7 1136 401 248 221 0 chr9 72350749 72350862 -51725310 + B1F2 SINE Alu 5 142 -7 7 1136 380 244 56 0 chr9 72350997 72351087 -51725085 + PB1D10 SINE Alu 5 99 -18 7 17 1204 44 0 0 chr9 72351699 72351834 -51724338 + B1_Mus2 SINE Alu 1 135 -12 7 1137 243 0 0 0 chr9 72351835 72351862 -51724310 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1137 691 227 68 54 chr9 72351873 72352078 -51724094 + B3 SINE B2 1 208 -8 7 1137 23 92 0 0 chr9 72352084 72352149 -51724023 + AT_rich Low_complexity Low_complexity 1 65 0 7 1137 180 0 0 0 chr9 72352665 72352685 -51723487 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 7 1137 856 179 14 7 chr9 72352685 72352826 -51723346 - B1_Mur4 SINE Alu -7 143 2 7 1137 363 287 90 14 chr9 72353521 72353666 -51722506 + HERV16-int LTR ERVL 565 720 -4276 7 1137 312 137 0 0 chr9 72354417 72354468 -51721704 + (T)n Simple_repeat Simple_repeat 1 51 0 7 1137 338 52 0 65 chr9 72354498 72354560 -51721612 + (T)n Simple_repeat Simple_repeat 1 58 0 7 1137 1256 54 0 0 chr9 72354560 72354707 -51721465 - B1_Mus1 SINE Alu 0 148 2 7 1137 266 337 140 16 chr9 72355382 72355690 -51720482 + L1MCa LINE L1 1388 1733 -4775 7 1137 901 246 14 18 chr9 72355696 72355915 -51720257 + B4 SINE B4 6 223 -69 7 1137 221 291 0 0 chr9 72355948 72356003 -51720169 + RSINE1 SINE B4 2 56 -109 7 1137 379 200 0 15 chr9 72356079 72356145 -51720027 + B4 SINE B4 220 284 -8 7 1137 1340 13 13 0 chr9 72356428 72356583 -51719589 + L1Md_F2 LINE L1 6424 6580 -2 7 1137 526 265 0 22 chr9 72356721 72356856 -51719316 + L1MB7 LINE L1 5542 5673 -501 7 1137 784 86 233 0 chr9 72356857 72356966 -51719206 + B1_Mus1 SINE Alu 1 136 -12 7 1137 1086 86 0 0 chr9 72356966 72357117 -51719055 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 7 1137 573 202 155 0 chr9 72357133 72357262 -51718910 + B1_Mur2 SINE Alu 1 149 0 7 1137 1620 147 63 222 chr9 72357272 72357717 -51718455 + ORR1D1 LTR MaLR 1 374 0 7 1137 914 260 132 22 chr9 72357717 72358165 -51718007 + L1MB7 LINE L1 5669 6165 -19 7 1137 710 286 73 71 chr9 72358189 72358358 -51717814 + L1MCa LINE L1 4589 4737 -1584 7 1137 633 313 16 38 chr9 72358358 72358544 -51717628 - B3A SINE B2 -16 182 1 7 1137 710 286 73 71 chr9 72358544 72358840 -51717332 + L1MCa LINE L1 4738 5055 -1266 7 1137 351 0 0 0 chr9 72358855 72358894 -51717278 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1137 1347 20 7 0 chr9 72359012 72359159 -51717013 + B1_Mus1 SINE Alu 1 148 0 7 1137 471 275 0 86 chr9 72359654 72359805 -51716367 + B3A SINE B2 57 194 -4 7 1137 189 171 0 0 chr9 72360822 72360857 -51715315 + T-rich Low_complexity Low_complexity 1 35 0 7 1137 1324 41 0 0 chr9 72360857 72361004 -51715168 - B1_Mus2 SINE Alu 0 147 1 7 1137 584 188 35 26 chr9 72361064 72361179 -51714993 + PB1D9 SINE Alu 5 120 0 7 1137 3660 62 7 0 chr9 72361434 72361873 -51714299 - L1_Mus1 LINE L1 0 6567 6126 7 1137 556 300 64 0 chr9 72361971 72362111 -51714061 - RSINE1 SINE B4 -14 151 3 7 1137 227 333 75 43 chr9 72362112 72362206 -51713966 + MIR SINE MIR 44 140 -122 7 1137 921 162 196 27 chr9 72362346 72362530 -51713642 - B3 SINE B2 -1 215 1 8 1137 302 262 51 54 chr9 72362567 72362671 -51713501 - PB1D7 SINE Alu -8 112 3 8 1137 1251 255 64 42 chr9 72362715 72363075 -51713097 - ORR1D2 LTR MaLR -2 368 1 8 1137 558 257 66 7 chr9 72363076 72363213 -51712959 - B1F SINE Alu -3 146 2 8 1137 988 229 9 23 chr9 72363759 72363978 -51712194 - B3 SINE B2 0 216 1 8 1137 304 274 12 12 chr9 72364221 72364306 -51711866 + MER58A DNA MER1_type 37 121 -103 8 1137 782 277 15 25 chr9 72364590 72364790 -51711382 + B3A SINE B2 1 198 0 8 1137 810 219 29 0 chr9 72364800 72364937 -51711235 - B1_Mur2 SINE Alu -7 142 2 8 1137 427 250 50 0 chr9 72364954 72365054 -51711118 + PB1D10 SINE Alu 4 108 -9 8 1137 26 0 0 0 chr9 72365201 72365227 -51710945 + AT_rich Low_complexity Low_complexity 1 26 0 8 1137 1491 77 11 0 chr9 72365684 72365866 -51710306 + B2_Mm2 SINE B2 2 185 -10 8 1137 258 105 0 0 chr9 72366273 72366311 -51709861 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1137 533 133 258 1 chr9 72366311 72366448 -51709724 - B2_Mm2 SINE B2 -17 199 1 8 1137 375 272 0 11 chr9 72367031 72367124 -51709048 + BC1_Mm scRNA scRNA 8 99 -53 8 1137 278 301 154 36 chr9 72367147 72367372 -51708800 - ORR1E LTR MaLR -48 311 43 8 1137 367 299 96 15 chr9 72367381 72367517 -51708655 + RSINE1 SINE B4 2 148 -17 8 1137 216 0 0 0 chr9 72367822 72367846 -51708326 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1137 449 284 59 15 chr9 72367854 72367990 -51708182 - B1F SINE Alu -4 145 4 8 1137 230 171 0 0 chr9 72369625 72369666 -51706506 - MTEb LTR MaLR -23 356 316 8 1137 492 198 12 0 chr9 72369671 72369757 -51706415 + ID SINE ID 1 87 -137 8 1137 634 225 57 110 chr9 72369894 72370149 -51706023 - MTEb LTR MaLR -90 289 68 8 1137 286 335 145 12 chr9 72370284 72370456 -51705716 - MIRb SINE MIR -50 218 24 8 1137 267 103 0 0 chr9 72370522 72370561 -51705611 + (TCTCCC)n Simple_repeat Simple_repeat 5 43 0 8 1137 1328 97 28 6 chr9 72370568 72370744 -51705428 - B2_Mm2 SINE B2 -15 180 1 8 1137 889 145 15 0 chr9 72371406 72371537 -51704635 + B1_Mus1 SINE Alu 2 134 -14 8 1137 4952 31 0 0 chr9 72372942 72373481 -51702691 + L1Md_T LINE L1 6044 6582 0 8 1137 558 42 14 0 chr9 72373499 72373571 -51702601 + Lx2 LINE L1 6571 6643 -354 8 1137 1383 99 102 19 chr9 72373571 72373777 -51702395 + Lx2 LINE L1 6775 6997 0 8 1137 1717 163 123 148 chr9 72373972 72374189 -51701983 - MTC LTR MaLR 0 421 210 8 1137 1184 88 0 0 chr9 72374189 72374336 -51701836 - B1_Mus2 SINE Alu 0 147 1 8 1137 1717 163 123 148 chr9 72374336 72374550 -51701622 - MTC LTR MaLR -212 209 1 8 1137 572 173 27 0 chr9 72374552 72374662 -51701510 - MTC-int LTR MaLR -2 1256 1144 8 1137 1003 85 21 7 chr9 72374679 72374821 -51701351 - B1_Mur4 SINE Alu 0 150 7 8 1137 3823 201 95 67 chr9 72374826 72375950 -51700222 - MTC-int LTR MaLR -100 1158 3 8 1137 198 71 0 0 chr9 72375960 72375988 -51700184 + (ATG)n Simple_repeat Simple_repeat 3 30 0 8 1137 1867 182 50 70 chr9 72375988 72376176 -51699996 - MTC LTR MaLR -32 389 210 8 1137 976 142 7 20 chr9 72376176 72376327 -51699845 - B1_Mur4 SINE Alu -1 149 1 8 1137 1867 182 50 70 chr9 72376327 72376535 -51699637 - MTC LTR MaLR -212 209 1 8 1137 1114 213 238 7 chr9 72376656 72376958 -51699214 + ORR1D1 LTR MaLR 1 372 -2 8 1137 180 111 0 0 chr9 72377166 72377193 -51698979 + (CATA)n Simple_repeat Simple_repeat 1 27 0 8 1137 1093 125 197 11 chr9 72377264 72377442 -51698730 + B3 SINE B2 1 211 -5 8 1137 236 249 57 112 chr9 72379326 72379525 -51696647 - L2c LINE L2 -303 3084 2897 8 1137 214 254 22 60 chr9 72379804 72379988 -51696184 + C-rich Low_complexity Low_complexity 2 178 0 8 1137 292 220 59 20 chr9 72379909 72380062 -51696110 + (CCGCG)n Simple_repeat Simple_repeat 5 163 0 8 1137 217 250 0 38 chr9 72380061 72380140 -51696032 + G-rich Low_complexity Low_complexity 5 80 0 8 1137 378 83 42 0 chr9 72380495 72380567 -51695605 + (TCC)n Simple_repeat Simple_repeat 1 75 0 8 1137 432 0 0 0 chr9 72380974 72381022 -51695150 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1137 21 0 0 0 chr9 72382074 72382095 -51694077 + AT_rich Low_complexity Low_complexity 1 21 0 8 1137 293 0 27 0 chr9 72382189 72382226 -51693946 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1137 21 36 0 0 chr9 72382854 72382882 -51693290 + AT_rich Low_complexity Low_complexity 1 28 0 8 1137 389 230 107 29 chr9 72383019 72383122 -51693050 - PB1D9 SINE Alu 0 120 10 8 1137 29 0 0 0 chr9 72383898 72383927 -51692245 + AT_rich Low_complexity Low_complexity 1 29 0 8 1137 292 283 84 9 chr9 72384023 72384130 -51692042 - PB1D10 SINE Alu -2 115 1 8 1137 297 109 0 0 chr9 72384171 72384217 -51691955 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 8 1137 943 170 7 7 chr9 72384329 72384477 -51691695 - B1_Mur2 SINE Alu -1 148 1 8 1137 572 160 57 0 chr9 72384580 72384686 -51691486 + PB1D7 SINE Alu 9 120 0 8 1137 268 280 222 8 chr9 72384686 72384706 -51691466 + B4A SINE B4 94 246 -46 8 1137 333 207 35 0 chr9 72384729 72384787 -51691385 + ID4 SINE ID 11 70 -13 8 1137 357 86 0 0 chr9 72385494 72385552 -51690620 + (T)n Simple_repeat Simple_repeat 1 58 0 8 1137 227 278 42 0 chr9 72386264 72386336 -51689836 + MIR3 SINE MIR 119 193 -15 8 1137 1267 42 14 0 chr9 72386387 72386531 -51689641 + B1_Mus1 SINE Alu 2 147 -1 8 1137 225 65 0 0 chr9 72387653 72387684 -51688488 + Lx5 LINE L1 7018 7048 -2 8 1137 1184 68 0 26 chr9 72387952 72387965 -51688207 - B1_Mus1 SINE Alu 0 148 139 8 1137 266 0 0 29 chr9 72387965 72388000 -51688172 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1137 1184 68 0 26 chr9 72388000 72388137 -51688035 - B1_Mus1 SINE Alu -10 138 2 8 1137 995 297 23 0 chr9 72388243 72388519 -51687653 + B4A SINE B4 5 286 -6 8 1137 872 223 81 20 chr9 72389967 72390164 -51686008 - B3 SINE B2 -6 210 2 8 1137 644 324 98 24 chr9 72390473 72390793 -51685379 + ORR1E LTR MaLR 1 371 -8 8 1137 600 244 61 12 chr9 72390798 72390931 -51685241 + ORR1E-int LTR MaLR 3 138 -1442 8 1137 1231 77 16 57 chr9 72390931 72391123 -51685049 - B2_Mm2 SINE B2 -11 184 1 8 1137 1184 286 44 70 chr9 72391123 72391568 -51684604 + ORR1E-int LTR MaLR 279 715 -865 8 1137 591 264 51 76 chr9 72391568 72391765 -51684407 + B3A SINE B2 1 192 -6 8 1137 1978 265 157 23 chr9 72391830 72392537 -51683635 + ORR1E-int LTR MaLR 745 1546 -34 8 1137 410 223 78 55 chr9 72392660 72392788 -51683384 + MTEa LTR MaLR 241 371 -8 8 1137 501 185 210 0 chr9 72393287 72393406 -51682766 - B1_Mus2 SINE Alu -2 145 2 8 1137 630 273 38 43 chr9 72393742 72393926 -51682246 + B3A SINE B2 1 183 -15 8 1137 499 179 0 0 chr9 72393938 72394016 -51682156 + B1_Mur3 SINE Alu 1 78 -71 8 1137 638 306 60 91 chr9 72394271 72394623 -51681549 - ORR1E LTR MaLR -6 353 13 8 1137 783 295 19 0 chr9 72394849 72395056 -51681116 + B3 SINE B2 1 211 -5 8 1137 24 0 0 0 chr9 72395057 72395081 -51681091 + AT_rich Low_complexity Low_complexity 1 24 0 8 1137 474 232 91 17 chr9 72395138 72395276 -51680896 + MER5A DNA MER1_type 7 160 -29 8 1137 1149 249 200 107 chr9 72395598 72396208 -51679964 + L1MCa LINE L1 683 1260 -5464 8 1137 318 247 0 90 chr9 72396208 72396297 -51679875 + ID4 SINE ID 2 82 -1 8 1137 1149 249 200 107 chr9 72396297 72396764 -51679408 + L1MCa LINE L1 1261 1859 -4865 8 1137 451 238 32 64 chr9 72396764 72396921 -51679251 + RSINE1 SINE B4 4 155 -10 8 1137 1149 249 200 107 chr9 72396921 72397146 -51679026 + L1MCa LINE L1 1860 2107 -4617 8 1137 299 241 70 26 chr9 72397253 72397368 -51678804 + L1MCa LINE L1 2255 2374 -4350 8 1137 263 225 14 0 chr9 72397496 72397567 -51678605 + CT-rich Low_complexity Low_complexity 1 72 0 8 1137 376 305 110 107 chr9 72397669 72397878 -51678294 + B4 SINE B4 2 223 -69 8 1137 741 242 75 0 chr9 72397878 72398064 -51678108 + B3 SINE B2 3 202 -14 8 1137 376 305 110 107 chr9 72398064 72398126 -51678046 + B4 SINE B4 224 274 -18 8 1137 216 224 17 0 chr9 72398246 72398304 -51677868 + A-rich Low_complexity Low_complexity 6 64 0 8 1137 1053 256 0 0 chr9 72398389 72398600 -51677572 + B3 SINE B2 1 211 -5 8 1137 282 202 32 0 chr9 72398606 72398675 -51677497 + L1MCa LINE L1 2567 2637 -3996 8 1137 299 323 39 0 chr9 72398924 72399051 -51677121 - L1MB7 LINE L1 0 6184 6053 8 1137 339 354 83 0 chr9 72399111 72399255 -51676917 - RSINE1 SINE B4 -7 158 3 8 1137 1043 119 66 22 chr9 72399264 72399445 -51676727 - B2_Mm2 SINE B2 -6 189 1 8 1137 1105 114 21 21 chr9 72399923 72400111 -51676061 - B2_Mm1t SINE B2 -4 189 2 8 1137 195 298 18 0 chr9 72400615 72400672 -51675500 + MIR SINE MIR 160 217 -45 8 1137 563 265 89 19 chr9 72400830 72401035 -51675137 - MER2 DNA MER2_type 0 345 113 8 1137 463 214 263 8 chr9 72401547 72401665 -51674507 - B1_Mur3 SINE Alu -1 148 1 8 1137 1047 92 42 0 chr9 72402405 72402547 -51673625 + B1_Mus1 SINE Alu 1 148 0 8 1137 195 69 0 0 chr9 72402547 72402576 -51673596 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 8 1137 26 107 0 0 chr9 72403521 72403624 -51672548 + AT_rich Low_complexity Low_complexity 1 103 0 8 1137 614 230 48 97 chr9 72403871 72404078 -51672094 - B3A SINE B2 0 198 2 8 1137 204 307 124 50 chr9 72404279 72404481 -51671691 - L2a LINE L2 -141 3285 3069 8 1137 357 298 146 34 chr9 72404502 72404735 -51671437 + L1ME4a LINE L1 5747 6005 -119 8 1137 27 62 0 0 chr9 72404926 72404974 -51671198 + AT_rich Low_complexity Low_complexity 1 48 0 8 1137 1584 31 0 35 chr9 72405352 72405552 -51670620 + B2_Mm1t SINE B2 1 193 0 8 1137 390 267 67 0 chr9 72406005 72406095 -51670077 - RSINE1 SINE B4 -68 97 2 8 1137 340 288 19 9 chr9 72406124 72406229 -51669943 - PB1D10 SINE Alu -9 108 3 8 1137 377 259 35 41 chr9 72406641 72406786 -51669386 - L1MD1 LINE L1 -1 6241 6098 8 1137 974 275 93 21 chr9 72406801 72407268 -51668904 - L1MD1 LINE L1 -187 6055 5508 8 1137 180 0 0 0 chr9 72407268 72407288 -51668884 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 8 1137 456 244 143 67 chr9 72407288 72407480 -51668692 - L1MD1 LINE L1 -659 5520 5310 8 1137 291 214 0 0 chr9 72407481 72407551 -51668621 + (TA)n Simple_repeat Simple_repeat 2 71 0 8 1137 2655 256 82 19 chr9 72407643 72408556 -51667616 - L1MC1 LINE L1 -18 6490 5520 8 1137 496 164 18 0 chr9 72408576 72408686 -51667486 + CT-rich Low_complexity Low_complexity 3 114 0 8 1137 870 144 13 27 chr9 72408709 72408859 -51667313 - B1_Mur3 SINE Alu 0 149 2 9 1137 787 243 120 65 chr9 72408928 72409329 -51666843 - L1MC1 LINE L1 -870 5451 5029 8 1137 703 261 118 8 chr9 72409340 72409595 -51666577 - L1MC1 LINE L1 -2591 3730 3448 8 1137 383 355 39 39 chr9 72409742 72409921 -51666251 - B4A SINE B4 -23 269 91 9 1137 405 324 85 32 chr9 72409971 72410255 -51665917 - ORR1D2 LTR MaLR -33 346 32 9 1137 497 235 212 53 chr9 72410326 72410416 -51665756 - L1MC1 LINE L1 -3141 3180 3082 8 1137 769 239 103 5 chr9 72410416 72410601 -51665571 + B3 SINE B2 4 206 -10 9 1137 497 235 212 53 chr9 72410601 72410887 -51665285 - L1MC1 LINE L1 -3240 3081 2744 8 1137 1854 132 97 6 chr9 72410915 72411239 -51664933 - ORR1A3 LTR MaLR -34 336 1 9 1137 336 304 129 12 chr9 72411322 72411492 -51664680 - Tigger7 DNA MER2_type -3 2488 2299 9 1137 585 249 144 36 chr9 72411699 72412087 -51664085 - L1MC1 LINE L1 -4244 2264 1835 8 1137 33 0 0 0 chr9 72412127 72412160 -51664012 + AT_rich Low_complexity Low_complexity 1 33 0 9 1137 540 62 0 0 chr9 72412174 72412254 -51663918 - L1Md_F2 LINE L1 -4 6578 6499 9 1137 700 289 35 13 chr9 72412346 72412536 -51663636 - B3A SINE B2 -9 186 4 9 1137 221 155 17 0 chr9 72412627 72412685 -51663487 + T-rich Low_complexity Low_complexity 2 60 0 9 1137 311 313 86 7 chr9 72412780 72412931 -51663241 - L1MC1 LINE L1 -6342 166 4 8 1137 376 235 99 42 chr9 72412935 72413126 -51663046 - L1MD LINE L1 -1000 5146 4945 9 1137 252 207 35 0 chr9 72413131 72413189 -51662983 - L1MB2 LINE L1 0 6171 6112 9 1137 527 181 30 13 chr9 72413200 72413312 -51662860 + B1_Mur1 SINE Alu 1 149 0 9 1137 319 258 105 0 chr9 72413474 72413598 -51662574 - L1M4 LINE L1 -367 5811 5675 9 1137 328 277 23 35 chr9 72413715 72413801 -51662371 - B1_Mur1 SINE Alu -15 134 50 9 1137 423 248 0 8 chr9 72413893 72414011 -51662161 - L1MD LINE L1 -1247 4899 4783 9 1137 246 243 279 0 chr9 72414003 72414139 -51662033 - L1MD LINE L1 -2466 3680 3507 9 1137 188 67 33 0 chr9 72415061 72415091 -51661081 + (TCTCCC)n Simple_repeat Simple_repeat 3 33 0 9 1137 26 64 0 0 chr9 72415428 72415475 -51660697 + AT_rich Low_complexity Low_complexity 1 47 0 9 1137 656 94 0 64 chr9 72415477 72415602 -51660570 - Lx LINE L1 -4 6650 6534 9 1137 16187 125 8 3 chr9 72415602 72418318 -51657854 - Lx LINE L1 -446 6208 3478 9 1137 329 0 24 0 chr9 72418318 72418359 -51657813 + (TTG)n Simple_repeat Simple_repeat 1 42 0 9 1137 16187 137 9 4 chr9 72418359 72418586 -51657586 - Lx LINE L1 -2406 3477 3252 9 1137 270 0 0 0 chr9 72418593 72418633 -51657539 - L1Md_A LINE L1 0 6582 6543 9 1137 511 57 0 0 chr9 72418629 72418699 -51657473 - MusHAL1 LINE L1 -632 2080 2011 9 1137 294 95 0 0 chr9 72419345 72419387 -51656785 + (CTG)n Simple_repeat Simple_repeat 1 42 0 9 1137 1123 136 6 0 chr9 72419418 72419594 -51656578 - MTC LTR MaLR -49 372 196 9 1137 252 167 0 0 chr9 72419596 72419644 -51656528 + CT-rich Low_complexity Low_complexity 4 51 0 9 1137 1227 73 84 0 chr9 72419669 72419848 -51656324 - B2_Mm2 SINE B2 0 195 2 9 1137 303 252 95 8 chr9 72419900 72420086 -51656086 - L1MEf LINE L1 -761 5419 5219 9 1137 464 279 24 24 chr9 72420139 72420264 -51655908 - ID_B1 SINE B4 -22 202 78 9 1137 732 112 284 0 chr9 72420277 72420411 -51655761 - B2_Mm2 SINE B2 -19 176 5 9 1137 262 285 174 37 chr9 72420713 72421277 -51654895 - L1MEf LINE L1 -4861 1381 741 9 1137 654 288 76 46 chr9 72421289 72421526 -51654646 - B4 SINE B4 -7 285 42 9 1137 426 293 114 0 chr9 72421603 72421726 -51654446 - ID_B1 SINE B4 -2 222 86 9 1137 2834 247 43 29 chr9 72421751 72422514 -51653658 - Lx7 LINE L1 -314 7382 6609 9 1137 1325 67 39 11 chr9 72422726 72422907 -51653265 + B2_Mm2 SINE B2 1 186 -9 9 1137 217 208 19 19 chr9 72422907 72422961 -51653211 + CT-rich Low_complexity Low_complexity 3 56 0 9 1137 180 0 0 0 chr9 72423191 72423211 -51652961 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 1137 218 339 87 47 chr9 72423213 72423234 -51652938 + ID_B1 SINE B4 83 214 -10 9 1137 442 257 57 9 chr9 72423234 72423340 -51652832 + B1_Mur1 SINE Alu 29 139 -10 9 1137 28 61 0 0 chr9 72423341 72423390 -51652782 + AT_rich Low_complexity Low_complexity 1 49 0 9 1137 647 282 25 33 chr9 72423721 72423935 -51652237 - B3A SINE B2 0 216 2 9 1137 833 268 79 32 chr9 72424107 72424385 -51651787 + B4 SINE B4 2 292 0 9 1137 284 252 259 40 chr9 72424420 72424571 -51651601 - B3A SINE B2 -14 184 1 9 1137 549 250 137 17 chr9 72425418 72425593 -51650579 - B3A SINE B2 0 198 3 9 1137 282 56 0 0 chr9 72426129 72426165 -51650007 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 9 1137 247 354 68 39 chr9 72426382 72426550 -51649622 - L2a LINE L2 -124 3263 3093 9 1137 488 268 48 34 chr9 72426550 72426697 -51649475 + RSINE1 SINE B4 3 151 -14 9 1137 351 0 0 0 chr9 72426704 72426743 -51649429 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 9 1137 210 391 82 49 chr9 72426743 72426870 -51649302 - L2a LINE L2 -303 3084 2950 9 1137 644 262 14 0 chr9 72427009 72427154 -51649018 + B1_Mur2 SINE Alu 1 147 -2 9 1137 333 82 0 0 chr9 72427180 72427229 -51648943 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 9 1137 39 0 0 0 chr9 72427343 72427382 -51648790 + AT_rich Low_complexity Low_complexity 1 39 0 9 1137 302 273 100 112 chr9 72427409 72427898 -51648274 - L1MEf LINE L1 -4677 2425 1890 9 1137 305 257 54 0 chr9 72427919 72427993 -51648179 + PB1D10 SINE Alu 27 104 -13 9 1137 211 72 23 23 chr9 72428888 72428931 -51647241 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 9 1137 716 190 20 27 chr9 72428933 72429079 -51647093 - B1_Mus1 SINE Alu -2 146 2 9 1137 207 0 0 0 chr9 72429171 72429194 -51646978 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1137 331 257 164 49 chr9 72429420 72429706 -51646466 - L1M5 LINE L1 -1485 4661 4343 9 1137 214 261 0 0 chr9 72429728 72429774 -51646398 - B1_Mur4 SINE Alu -103 47 2 9 1137 27 0 0 0 chr9 72429817 72429844 -51646328 + AT_rich Low_complexity Low_complexity 1 27 0 9 1137 592 257 53 43 chr9 72429881 72430068 -51646104 - B3 SINE B2 -2 214 26 9 1137 447 134 73 0 chr9 72430016 72430098 -51646074 + B2_Mm2 SINE B2 100 187 -8 9 1137 260 239 0 0 chr9 72430174 72430220 -51645952 - B3 SINE B2 -156 60 15 9 1137 396 116 23 8 chr9 72430519 72430627 -51645545 - B2_Mm2 SINE B2 0 195 47 9 1137 1272 81 35 0 chr9 72430641 72430815 -51645357 - B2_Mm2 SINE B2 -15 180 1 9 1137 1287 99 39 6 chr9 72431179 72431361 -51644811 + B2_Mm2 SINE B2 2 189 -6 9 1137 1211 34 0 13 chr9 72431632 72431781 -51644391 + B1_Mus1 SINE Alu 2 148 0 9 1137 1090 95 7 0 chr9 72432194 72432341 -51643831 + B1_Mus1 SINE Alu 1 148 0 9 1137 1102 70 76 6 chr9 72432415 72432573 -51643599 - B2_Mm2 SINE B2 -26 169 1 9 1137 204 40 0 0 chr9 72432899 72432924 -51643248 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1137 996 243 14 14 chr9 72432971 72433184 -51642988 - ORR1D1 LTR MaLR -161 213 1 9 1137 394 250 0 61 chr9 72433835 72433933 -51642239 + MER5A1 DNA MER1_type 15 106 -60 9 1137 244 269 38 13 chr9 72434563 72434642 -51641530 - L1M3 LINE L1 -373 5810 5730 9 1137 390 170 21 0 chr9 72434682 72434776 -51641396 - Lx2 LINE L1 -2 6995 6900 9 1137 2788 113 40 103 chr9 72435292 72435836 -51640336 - Lx3C LINE L1 0 6976 6467 9 1137 356 222 42 0 chr9 72436459 72436531 -51639641 + PB1D9 SINE Alu 43 117 -3 9 1137 1347 106 0 5 chr9 72437209 72437398 -51638774 - B2_Mm2 SINE B2 -7 188 1 9 1137 21 0 0 0 chr9 72437549 72437570 -51638602 + AT_rich Low_complexity Low_complexity 1 21 0 9 1137 766 302 38 62 chr9 72438214 72438503 -51637669 + B4A SINE B4 5 286 -6 9 1137 1163 62 0 0 chr9 72438606 72438751 -51637421 + B1_Mus1 SINE Alu 2 146 -2 9 1137 714 220 0 28 chr9 72438782 72438927 -51637245 + B1_Mur2 SINE Alu 2 142 -7 9 1137 1359 85 5 5 chr9 72439038 72439227 -51636945 - B2_Mm1t SINE B2 -4 189 1 9 1137 204 40 0 0 chr9 72439907 72439932 -51636240 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 9 1137 22 0 0 0 chr9 72440692 72440714 -51635458 + AT_rich Low_complexity Low_complexity 1 22 0 9 1137 180 302 19 0 chr9 72441256 72441309 -51634863 + L3 LINE CR1 4428 4481 -8 9 1137 2781 77 23 10 chr9 72441524 72441917 -51634255 - Lx LINE L1 -1 6653 6256 9 1137 1322 42 0 0 chr9 72442186 72442352 -51633820 + B2_Mm1t SINE B2 1 166 -27 9 1137 255 61 0 0 chr9 72442352 72442385 -51633787 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 9 1137 711 31 0 0 chr9 72442459 72442555 -51633617 + L1_Mus2 LINE L1 6471 6566 0 9 1137 1325 73 23 0 chr9 72442561 72442738 -51633434 + B2_Mm2 SINE B2 1 181 -14 9 1137 27 62 0 0 chr9 72442738 72442786 -51633386 + AT_rich Low_complexity Low_complexity 1 48 0 9 1137 233 143 0 0 chr9 72443260 72443295 -51632877 - U2 snRNA snRNA -153 35 1 9 1137 28 0 0 0 chr9 72443565 72443593 -51632579 + AT_rich Low_complexity Low_complexity 1 28 0 9 1137 269 51 0 0 chr9 72443601 72443640 -51632532 - B1_Mur4 SINE Alu 0 150 112 9 1137 616 179 237 32 chr9 72443671 72443827 -51632345 - B2_Mm2 SINE B2 -7 188 1 9 1137 6293 57 23 0 chr9 72444101 72444836 -51631336 + L1_Mus1 LINE L1 5816 6567 0 9 1137 939 221 58 10 chr9 72444853 72445059 -51631113 + B3 SINE B2 1 216 0 9 1137 948 262 82 44 chr9 72445148 72445623 -51630549 - L1M4 LINE L1 -1520 5118 4626 9 1137 1430 299 51 25 chr9 72445775 72446131 -51630041 - Lx8 LINE L1 -183 7290 6918 9 1137 282 29 0 0 chr9 72446131 72446166 -51630006 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1137 1217 51 0 0 chr9 72446166 72446304 -51629868 - B1_Mus2 SINE Alu -9 138 1 9 1137 1430 299 51 25 chr9 72446304 72446420 -51629752 - Lx8 LINE L1 -556 6917 6806 9 1137 189 0 0 0 chr9 72446457 72446478 -51629694 + (TGG)n Simple_repeat Simple_repeat 3 23 0 9 1137 400 278 25 94 chr9 72446481 72446589 -51629583 - L1M4 LINE L1 -2469 4172 4061 9 1137 1289 105 77 0 chr9 72446589 72446770 -51629402 - B2_Mm2 SINE B2 0 195 1 9 1137 400 278 25 94 chr9 72446770 72446820 -51629352 - L1M4 LINE L1 -2581 4060 4025 9 1137 1315 80 102 0 chr9 72447182 72447358 -51628814 + B2_Mm2 SINE B2 2 195 0 9 1137 452 258 0 30 chr9 72447594 72447694 -51628478 - ID_B1 SINE B4 -6 218 122 1 1137 333 293 58 106 chr9 72447771 72448052 -51628120 - Lx7 LINE L1 -1876 5820 5536 1 1137 239 174 22 0 chr9 72448093 72448139 -51628033 + MTE2b LTR MaLR 326 372 -7 1 1137 341 221 43 65 chr9 72448163 72448319 -51627853 - Lx7 LINE L1 -672 5628 5443 1 1137 817 264 177 61 chr9 72448912 72449521 -51626651 - L1M4 LINE L1 -5201 1341 662 9 1137 267 172 64 92 chr9 72449530 72449561 -51626611 - L1_Mur2 LINE L1 -908 5404 5376 1 1137 5302 130 19 13 chr9 72449561 72449649 -51626523 - Lx2B LINE L1 0 7000 6918 1 1137 3657 166 115 128 chr9 72449649 72450563 -51625609 + RMER19B LTR ERVK 1 902 0 1 1137 5302 130 19 13 chr9 72450563 72451262 -51624910 - Lx2B LINE L1 -83 6917 6208 1 1137 522 100 3 5 chr9 72451262 72451339 -51624833 - L1_Mur2 LINE L1 -937 5375 5268 1 1137 5688 125 67 6 chr9 72451340 72452293 -51623879 + L1_Mur2 LINE L1 3847 4857 -1020 1 1137 601 178 107 15 chr9 72452407 72452538 -51623634 - B1_Mur2 SINE Alu 0 149 7 1 1137 207 0 0 0 chr9 72452817 72452840 -51623332 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1137 1296 57 0 0 chr9 72452840 72452999 -51623173 - B2_Mm1t SINE B2 -33 160 2 1 1137 1456 82 5 35 chr9 72453135 72453336 -51622836 - B2_Mm2 SINE B2 0 195 1 1 1137 183 315 112 0 chr9 72454032 72454121 -51622051 + MIR3 SINE MIR 86 184 -24 1 1137 726 305 24 108 chr9 72455773 72455986 -51620186 - B3A SINE B2 0 195 1 1 1137 21 36 0 0 chr9 72456098 72456126 -51620046 + AT_rich Low_complexity Low_complexity 1 28 0 1 1137 3921 201 148 14 chr9 72456401 72457424 -51618748 + RMER1B Other Other 209 1065 -1 1 1137 1226 78 42 0 chr9 72458504 72458670 -51617502 + B2_Mm2 SINE B2 1 173 -22 1 1137 730 194 0 53 chr9 72458801 72458953 -51617219 - B1_Mur2 SINE Alu 0 149 6 1 1137 257 276 12 106 chr9 72458879 72458964 -51617208 - MT2B LTR ERVL -367 234 158 1 1137 1179 95 0 0 chr9 72459118 72459265 -51616907 + B1_Mm SINE Alu 1 147 0 1 1137 243 0 0 0 chr9 72459317 72459344 -51616828 + (GAA)n Simple_repeat Simple_repeat 3 29 0 1 1137 414 0 0 0 chr9 72459344 72459390 -51616782 + (TAG)n Simple_repeat Simple_repeat 2 47 0 1 1137 704 252 7 33 chr9 72459691 72459843 -51616329 + RSINE1 SINE B4 4 151 -14 1 1137 24 0 0 0 chr9 72460246 72460270 -51615902 + AT_rich Low_complexity Low_complexity 1 24 0 1 1137 333 231 134 71 chr9 72460324 72460436 -51615736 - PB1D9 SINE Alu -1 119 1 1 1137 272 289 112 10 chr9 72461027 72461125 -51615047 - MIRb SINE MIR -132 136 29 1 1137 1185 178 0 42 chr9 72461350 72461567 -51614605 + B3 SINE B2 6 213 -3 1 1137 281 227 0 15 chr9 72461777 72461844 -51614328 + MamRep1161 DNA TcMar 5 70 -887 1 1137 237 200 36 0 chr9 72462167 72462222 -51613950 + CT-rich Low_complexity Low_complexity 4 60 0 1 1137 25 31 0 0 chr9 72462442 72462474 -51613698 + AT_rich Low_complexity Low_complexity 1 32 0 1 1137 230 167 37 0 chr9 72463271 72463325 -51612847 + CT-rich Low_complexity Low_complexity 3 58 0 1 1137 1309 41 0 0 chr9 72463325 72463472 -51612700 - B1_Mm SINE Alu 0 147 1 1 1137 29 0 0 0 chr9 72463598 72463627 -51612545 + AT_rich Low_complexity Low_complexity 1 29 0 1 1137 219 69 0 0 chr9 72466201 72466230 -51609942 + (CCCCAA)n Simple_repeat Simple_repeat 3 31 0 1 1137 235 282 14 14 chr9 72468449 72468521 -51607651 + CT-rich Low_complexity Low_complexity 6 77 0 1 1137 183 80 0 0 chr9 72468522 72468547 -51607625 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1137 399 307 34 42 chr9 72471481 72471600 -51604572 + PB1 SINE Alu 9 126 -1 1 1137 552 260 123 0 chr9 72471906 72472052 -51604120 + RSINE1 SINE B4 2 165 0 1 1137 25 0 0 0 chr9 72472157 72472182 -51603990 + AT_rich Low_complexity Low_complexity 1 25 0 1 1137 557 253 125 12 chr9 72472183 72472200 -51603972 - B3A SINE B2 -9 189 173 1 1137 189 0 0 0 chr9 72472200 72472221 -51603951 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 1 1137 557 253 125 12 chr9 72472221 72472371 -51603801 - B3A SINE B2 -26 172 4 1 1137 186 326 0 0 chr9 72472374 72472420 -51603752 - L2c LINE L2 -68 3319 3274 1 1137 204 40 0 0 chr9 72472493 72472518 -51603654 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1137 1252 74 0 0 chr9 72472518 72472666 -51603506 - B1_Mus1 SINE Alu 0 148 1 1 1137 1151 134 28 16 chr9 72472666 72472847 -51603325 - B2_Mm1t SINE B2 -9 184 1 1 1137 251 303 165 32 chr9 72473006 72473224 -51602948 - MIRb SINE MIR -9 259 13 1 1137 666 232 86 81 chr9 72473312 72473509 -51602663 - B3 SINE B2 -11 205 8 1 1137 377 276 0 48 chr9 72473551 72473654 -51602518 + PB1D9 SINE Alu 23 120 0 1 1137 458 155 268 0 chr9 72473761 72473858 -51602314 + B1_Mus2 SINE Alu 8 130 -17 1 1137 235 232 45 261 chr9 72474404 72474454 -51601718 + ID_B1 SINE B4 81 129 -95 1 1137 1303 54 0 0 chr9 72474454 72474601 -51601571 + B1_Mm SINE Alu 1 147 0 1 1137 235 232 45 261 chr9 72474601 72474661 -51601511 + ID_B1 SINE B4 130 167 -57 1 1137 417 178 0 40 chr9 72474652 72474728 -51601444 - B1_Mus1 SINE Alu -63 85 13 1 1137 656 280 51 40 chr9 72474778 72474953 -51601219 + B3 SINE B2 1 177 -39 1 1137 722 211 72 0 chr9 72474970 72475122 -51601050 + ORR1D1 LTR MaLR 2 164 -210 1 1137 327 138 62 0 chr9 72475168 72475248 -51600924 + CT-rich Low_complexity Low_complexity 4 88 0 1 1137 831 159 140 11 chr9 72475250 72475428 -51600744 + ORR1D1 LTR MaLR 166 366 -8 1 1137 702 175 41 20 chr9 72476783 72476929 -51599243 + B1_Mur3 SINE Alu 1 149 0 1 1137 595 186 35 104 chr9 72476976 72477033 -51599139 - URR1B DNA MER1_type -91 134 85 1 1137 1093 102 7 26 chr9 72477033 72477044 -51599128 - B1_Mus1 SINE Alu 0 148 141 1 1137 224 0 65 0 chr9 72477044 72477075 -51599097 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1137 1093 102 7 26 chr9 72477075 72477214 -51598958 - B1_Mus1 SINE Alu -8 140 1 1 1137 595 186 35 104 chr9 72477214 72477300 -51598872 - URR1B DNA MER1_type -141 84 1 1 1137 374 259 25 0 chr9 72477661 72477742 -51598430 - B4A SINE B4 -209 83 1 1 1137 747 264 71 19 chr9 72477905 72478117 -51598055 + ID_B1 SINE B4 2 224 0 1 1137 1030 89 172 0 chr9 72478138 72478295 -51597877 + B2_Mm1t SINE B2 3 186 -7 1 1137 229 114 0 0 chr9 72478360 72478395 -51597777 - B1_Mus1 SINE Alu -113 35 1 1 1137 1770 26 0 0 chr9 72478468 72478658 -51597514 - B2_Mm1a SINE B2 -3 190 1 1 1137 521 270 45 78 chr9 72478756 72478825 -51597347 + MLT1H-int LTR MaLR 126 188 -1221 1 1137 1072 136 7 0 chr9 72478825 72478972 -51597200 + B1_Mur3 SINE Alu 1 148 -1 1 1137 521 270 45 78 chr9 72478972 72479171 -51597001 + MLT1H-int LTR MaLR 189 385 -1024 1 1137 1231 82 0 0 chr9 72479172 72479319 -51596853 + B1_Mm SINE Alu 1 147 0 1 1137 477 122 0 0 chr9 72479321 72479395 -51596777 + (GGA)n Simple_repeat Simple_repeat 3 76 0 1 1137 655 266 25 25 chr9 72479488 72479646 -51596526 + RSINE1 SINE B4 4 161 -4 1 1137 210 150 0 0 chr9 72479666 72479706 -51596466 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 1 1137 1236 236 57 60 chr9 72479891 72480404 -51595768 - RLTR18B LTR ERVK -134 482 1 1 1137 348 48 15 31 chr9 72480471 72480536 -51595636 + (TTTTG)n Simple_repeat Simple_repeat 1 64 0 1 1137 1307 41 0 0 chr9 72480536 72480683 -51595489 - B1_Mus2 SINE Alu 0 147 1 1 1137 1147 131 0 0 chr9 72480755 72480923 -51595249 + B2_Mm2 SINE B2 1 168 -27 1 1137 341 127 0 35 chr9 72480942 72480999 -51595173 + B2_Mm2 SINE B2 47 101 -94 1 1137 31 26 0 0 chr9 72481003 72481041 -51595131 + AT_rich Low_complexity Low_complexity 1 38 0 1 1137 876 102 142 0 chr9 72481049 72481176 -51594996 + B1_Mus1 SINE Alu 1 145 -3 1 1137 842 10 0 0 chr9 72481253 72481350 -51594822 + U6 snRNA snRNA 1 97 -10 1 1137 732 284 48 39 chr9 72481365 72481798 -51594374 + L1M2 LINE L1 2165 2625 -4224 1 1137 1252 61 0 0 chr9 72481857 72482004 -51594168 + B1_Mm SINE Alu 1 147 0 1 1137 194 150 25 0 chr9 72482006 72482046 -51594126 + A-rich Low_complexity Low_complexity 2 42 0 1 1137 21 0 0 0 chr9 72482197 72482218 -51593954 + AT_rich Low_complexity Low_complexity 1 21 0 1 1137 198 0 0 0 chr9 72482247 72482269 -51593903 + (GGA)n Simple_repeat Simple_repeat 2 23 0 1 1137 686 187 21 122 chr9 72482485 72482674 -51593498 + ORR1D1 LTR MaLR 3 172 -202 1 1138 284 301 74 21 chr9 72482938 72483033 -51593139 + ID_B1 SINE B4 1 100 -124 1 1138 208 155 40 30 chr9 72483357 72483457 -51592715 + T-rich Low_complexity Low_complexity 2 102 0 1 1138 623 194 37 0 chr9 72483457 72483565 -51592607 - B1_Mur4 SINE Alu -37 113 2 1 1138 739 234 28 0 chr9 72483601 72483746 -51592426 - B1_Mur3 SINE Alu 0 149 1 1 1138 463 269 29 9 chr9 72483785 72483890 -51592282 - PB1 SINE Alu -20 107 1 1 1138 238 333 8 86 chr9 72483786 72483914 -51592258 - ID_B1 SINE B4 -48 176 59 1 1138 333 0 0 0 chr9 72484050 72484087 -51592085 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1138 317 231 26 37 chr9 72484096 72484218 -51591954 + Lx4B LINE L1 6865 7058 0 1 1138 1499 264 54 31 chr9 72484271 72484717 -51591455 - MT2A LTR ERVL -75 458 3 1 1138 1792 16 0 0 chr9 72484756 72484947 -51591225 - B2_Mm1t SINE B2 -2 191 1 1 1138 346 151 0 0 chr9 72485218 72485271 -51590901 - RLTR14 LTR ERV1 -5 377 325 1 1138 186 71 0 0 chr9 72485291 72485319 -51590853 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1138 791 69 259 0 chr9 72485319 72485435 -51590737 - B1_Mm SINE Alu 0 147 2 1 1138 552 169 11 0 chr9 72485435 72485524 -51590648 - RLTR14 LTR ERV1 -47 335 246 1 1138 1276 34 0 39 chr9 72485545 72485698 -51590474 - B1_Mm SINE Alu 0 147 1 1 1138 1616 128 4 44 chr9 72485698 72485968 -51590204 - RLTR14 LTR ERV1 -123 259 1 1 1138 1473 73 15 35 chr9 72486240 72486438 -51589734 + B2_Mm2 SINE B2 1 194 -1 1 1138 304 161 54 8 chr9 72486447 72486519 -51589653 + B1_Mus2 SINE Alu 20 126 -21 1 1138 228 35 0 0 chr9 72486521 72486550 -51589622 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1138 337 356 17 9 chr9 72486550 72486666 -51589506 + PB1D10 SINE Alu 1 117 0 1 1138 23 0 0 0 chr9 72486666 72486689 -51589483 + AT_rich Low_complexity Low_complexity 1 23 0 1 1138 268 328 60 0 chr9 72487037 72487153 -51589019 + LTR81A LTR ERV1? 18 140 -1210 1 1138 1049 109 13 39 chr9 72487250 72487403 -51588769 + B1_Mur4 SINE Alu 1 149 -1 1 1138 595 263 137 0 chr9 72487422 72487612 -51588560 + ID_B1 SINE B4 1 216 -8 1 1138 186 189 0 0 chr9 72487647 72487684 -51588488 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1138 387 0 0 0 chr9 72489605 72489648 -51586524 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1138 411 73 0 0 chr9 72489648 72489703 -51586469 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1138 1772 26 0 0 chr9 72489836 72490025 -51586147 + B2_Mm1a SINE B2 2 190 -3 1 1138 909 96 44 7 chr9 72490042 72490179 -51585993 + B1_Mus1 SINE Alu 6 147 -1 1 1138 978 102 38 123 chr9 72490571 72490766 -51585406 - B2_Mm2 SINE B2 0 195 18 1 1138 3016 38 18 0 chr9 72490766 72491106 -51585066 - ORR1A1 LTR MaLR 0 346 1 1 1138 978 102 38 123 chr9 72491106 72491122 -51585050 - B2_Mm2 SINE B2 -178 17 2 1 1138 1075 262 7 72 chr9 72491261 72491565 -51584607 - B4A SINE B4 -8 284 1 1 1138 526 275 71 39 chr9 72492656 72492811 -51583361 + RSINE1 SINE B4 2 161 -4 1 1138 22 0 0 0 chr9 72492817 72492839 -51583333 + AT_rich Low_complexity Low_complexity 1 22 0 1 1138 1298 87 87 0 chr9 72492841 72493013 -51583159 + B2_Mm2 SINE B2 1 187 -8 1 1138 1553 70 16 0 chr9 72493080 72493266 -51582906 + B2_Mm2 SINE B2 1 189 -6 1 1138 836 112 15 0 chr9 72493267 72493401 -51582771 + (GAAA)n Simple_repeat Simple_repeat 4 139 0 1 1138 315 282 102 31 chr9 72493936 72494013 -51582159 - B3A SINE B2 -24 174 90 1 1138 1077 53 61 0 chr9 72494013 72494144 -51582028 + B1_Mur4 SINE Alu 1 139 -11 1 1138 207 0 0 0 chr9 72494144 72494167 -51582005 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1138 315 282 102 31 chr9 72494167 72494216 -51581956 - B3A SINE B2 -109 89 40 1 1138 1196 76 0 6 chr9 72494218 72494376 -51581796 + B2_Mm2 SINE B2 2 158 -37 1 1138 180 0 0 0 chr9 72494377 72494397 -51581775 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 1138 544 178 125 17 chr9 72494513 72494633 -51581539 - B1_Mur1 SINE Alu -1 148 16 1 1138 262 143 110 154 chr9 72494571 72494662 -51581510 - MT2B LTR ERVL -367 234 148 1 1138 726 256 18 24 chr9 72494692 72494856 -51581316 + RSINE1 SINE B4 3 165 0 1 1138 1291 48 0 0 chr9 72495091 72495237 -51580935 + B1_Mm SINE Alu 2 147 0 1 1138 842 204 0 13 chr9 72495262 72495411 -51580761 + B1_Mus1 SINE Alu 1 147 -1 1 1138 1181 194 182 4 chr9 72495416 72495696 -51580476 + MTD LTR MaLR 84 413 -6 1 1138 233 273 55 123 chr9 72495715 72495861 -51580311 - RLTR25B LTR ERVK -451 577 442 1 1138 282 292 32 96 chr9 72495782 72495796 -51580376 - MT2B LTR ERVL -330 271 202 1 1138 518 245 10 19 chr9 72495796 72495900 -51580272 - B1_Mur3 SINE Alu -45 104 2 1 1138 956 238 48 19 chr9 72496121 72496331 -51579841 + ID_B1 SINE B4 1 216 -8 1 1138 480 143 321 9 chr9 72496610 72496745 -51579427 - Lx7 LINE L1 -1960 5736 5562 1 1138 819 234 29 96 chr9 72496777 72496958 -51579214 + B3 SINE B2 2 178 -38 1 1138 1223 62 0 14 chr9 72496958 72497106 -51579066 + B1_Mm SINE Alu 1 146 -1 1 1138 536 234 29 96 chr9 72497106 72497132 -51579040 + B2_Mm2 SINE B2 165 195 0 1 1138 1006 140 0 0 chr9 72497198 72497334 -51578838 + B1_Mus2 SINE Alu 3 138 -9 1 1138 622 200 9 0 chr9 72497454 72497569 -51578603 - B1F1 SINE Alu -10 139 24 1 1138 435 49 0 0 chr9 72497899 72497960 -51578212 - B1_Mm SINE Alu -1 146 86 1 1138 198 103 0 0 chr9 72497970 72497999 -51578173 + (GAA)n Simple_repeat Simple_repeat 2 30 0 1 1138 1072 81 6 22 chr9 72498000 72498178 -51577994 + (GGA)n Simple_repeat Simple_repeat 3 177 0 1 1138 480 307 14 21 chr9 72498433 72498576 -51577596 + RSINE1 SINE B4 11 152 -13 1 1138 1606 48 27 0 chr9 72498615 72498802 -51577370 + B2_Mm1t SINE B2 2 193 0 1 1138 1260 119 23 0 chr9 72498804 72498980 -51577192 - B2_Mm2 SINE B2 -14 181 2 1 1138 191 61 0 29 chr9 72498990 72499024 -51577148 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1138 1235 48 7 7 chr9 72499051 72499198 -51576974 - B1_Mus1 SINE Alu -1 147 1 1 1138 1778 31 0 0 chr9 72499236 72499428 -51576744 + B2_Mm1t SINE B2 2 193 0 1 1138 940 161 0 0 chr9 72499438 72499575 -51576597 + B1_Mus1 SINE Alu 3 139 -9 1 1138 248 279 0 42 chr9 72499898 72499969 -51576203 + BC1_Mm scRNA scRNA 2 69 -83 1 1138 396 323 11 0 chr9 72499906 72499999 -51576173 + ID_B1 SINE B4 9 102 -122 1 1138 441 299 8 0 chr9 72500002 72500119 -51576053 + ID_B1 SINE B4 106 223 -1 1 1138 528 16 0 0 chr9 72501178 72501239 -51574933 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1138 1265 48 6 0 chr9 72501752 72501917 -51574255 + (GAAA)n Simple_repeat Simple_repeat 4 169 0 3 1138 1090 76 0 14 chr9 72501935 72502081 -51574091 + B1_Mus2 SINE Alu 2 145 -2 4 1138 257 0 30 0 chr9 72502096 72502129 -51574043 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1138 701 236 0 77 chr9 72502134 72502341 -51573831 + B3A SINE B2 4 194 -4 6 1138 4396 195 18 124 chr9 72502341 72503524 -51572648 - RMER1B Other Other -9 1057 1 7 1138 297 0 0 0 chr9 72503833 72503866 -51572306 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1138 231 36 0 0 chr9 72503949 72503977 -51572195 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 1138 611 261 180 0 chr9 72504279 72504524 -51571648 - B4 SINE B4 -2 290 2 1 1138 767 234 74 117 chr9 72505263 72505723 -51570449 - RLTR12B LTR ERVK -42 486 47 1 1138 283 277 68 19 chr9 72505799 72505902 -51570270 - MER57C2 LTR ERV1 -18 416 309 1 1138 537 209 0 9 chr9 72505921 72506057 -51570115 - B1_Mur1 SINE Alu -19 130 1 1 1138 288 200 11 105 chr9 72505972 72506067 -51570105 - MT2B LTR ERVL -361 240 155 1 1138 390 125 0 0 chr9 72506097 72506161 -51570011 + B1_Mus2 SINE Alu 73 136 -11 1 1138 219 36 0 0 chr9 72506163 72506191 -51569981 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1138 510 17 0 0 chr9 72506191 72506249 -51569923 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 1 1138 590 245 43 7 chr9 72506250 72506390 -51569782 + RSINE1 SINE B4 7 151 -14 1 1138 631 320 54 88 chr9 72506544 72506839 -51569333 + B4 SINE B4 3 287 -5 1 1138 377 70 0 17 chr9 72506841 72506899 -51569273 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1138 856 139 0 35 chr9 72507280 72507422 -51568750 - B1_Mus1 SINE Alu -11 137 1 2 1138 231 304 130 19 chr9 72507583 72507744 -51568428 - MER57C2 LTR ERV1 -193 179 1 1 1138 393 22 0 0 chr9 72508003 72508049 -51568123 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1138 612 227 14 47 chr9 72508515 72508663 -51567509 + B1_Mur2 SINE Alu 2 144 -5 2 1138 686 197 28 14 chr9 72508748 72508892 -51567280 - B1_Mur2 SINE Alu -3 146 1 2 1138 25 0 0 0 chr9 72509326 72509351 -51566821 + AT_rich Low_complexity Low_complexity 1 25 0 2 1138 304 210 82 25 chr9 72509362 72509484 -51566688 - RSINE1 SINE B4 -35 130 2 2 1138 267 256 32 40 chr9 72509986 72510112 -51566060 + C-rich Low_complexity Low_complexity 6 130 0 2 1138 186 171 0 0 chr9 72510288 72510329 -51565843 + CT-rich Low_complexity Low_complexity 1 41 0 2 1138 257 258 0 0 chr9 72511164 72511226 -51564946 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1138 234 0 0 0 chr9 72511542 72511568 -51564604 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1138 283 232 116 0 chr9 72511569 72511681 -51564491 + L1MA6 LINE L1 5844 5968 -332 3 1138 198 0 0 0 chr9 72511810 72511832 -51564340 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1138 318 26 0 0 chr9 72511832 72511871 -51564301 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1138 614 244 167 11 chr9 72512022 72512208 -51563964 + B3 SINE B2 2 216 0 3 1138 299 295 69 35 chr9 72512899 72513015 -51563157 - L2c LINE L2 -4 3383 3264 3 1138 180 0 0 0 chr9 72513060 72513080 -51563092 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1138 255 202 45 27 chr9 72513127 72513239 -51562933 + (CA)n Simple_repeat Simple_repeat 1 114 0 3 1138 672 246 35 53 chr9 72513339 72513566 -51562606 + ID_B1 SINE B4 2 224 0 3 1138 1212 48 0 0 chr9 72513892 72514039 -51562133 - B1_Mus2 SINE Alu 0 147 1 3 1138 414 176 172 9 chr9 72514193 72514320 -51561852 - B1_Mm SINE Alu 0 149 3 4 1138 1611 42 0 20 chr9 72514412 72514607 -51561565 - B2_Mm1t SINE B2 0 193 3 4 1138 673 250 22 11 chr9 72514805 72514983 -51561189 + B3A SINE B2 3 182 -16 4 1138 232 215 234 0 chr9 72515055 72515193 -51560979 + ID_B1 SINE B4 1 170 -54 4 1138 497 306 57 0 chr9 72515356 72515480 -51560692 - RSINE1 SINE B4 -3 162 32 4 1138 1090 102 0 13 chr9 72515548 72515697 -51560475 - B1_Mus1 SINE Alu -1 147 1 4 1138 1572 32 27 0 chr9 72515780 72515966 -51560206 - B2_Mm1a SINE B2 -1 192 2 4 1138 285 265 106 28 chr9 72516028 72516214 -51559958 - L1M3 LINE L1 -1480 4666 4459 4 1138 417 273 136 0 chr9 72516296 72516406 -51559766 - B1_Mur2 SINE Alu -10 139 15 4 1138 1602 21 16 5 chr9 72516484 72516674 -51559498 - B2_Mm1a SINE B2 0 193 2 4 1138 1221 192 165 27 chr9 72516758 72517128 -51559044 - MTC LTR MaLR 0 421 1 5 1138 225 246 178 37 chr9 72517228 72517363 -51558809 + MTE2a LTR MaLR 144 297 -82 5 1138 394 149 69 0 chr9 72517325 72517412 -51558760 - B1_Mus1 SINE Alu -44 104 12 5 1138 227 254 16 0 chr9 72517610 72517673 -51558499 - L1MC4 LINE L1 -140 7902 7839 5 1138 640 264 28 46 chr9 72517700 72517918 -51558254 - B3 SINE B2 -2 214 1 5 1138 979 243 14 14 chr9 72517935 72518148 -51558024 - B3 SINE B2 -3 213 1 5 1138 420 173 27 0 chr9 72518161 72518236 -51557936 - B1_Mur1 SINE Alu -5 144 68 5 1138 1590 31 10 5 chr9 72518608 72518800 -51557372 + B2_Mm1t SINE B2 1 193 0 5 1138 361 157 129 0 chr9 72519856 72519926 -51556246 + B1_Mur2 SINE Alu 71 149 0 5 1138 241 249 77 83 chr9 72519960 72520175 -51555997 + L1MEa LINE L1 1017 1227 -5082 5 1138 364 205 162 3 chr9 72520289 72520443 -51555729 + B3A SINE B2 2 193 -2 6 1138 225 188 71 14 chr9 72520475 72520545 -51555627 + L1MEa LINE L1 1835 1908 -4492 5 1138 784 230 62 0 chr9 72520546 72520724 -51555448 - B3 SINE B2 -5 211 23 6 1138 588 195 109 0 chr9 72521000 72521128 -51555044 - B1_Mus1 SINE Alu -1 147 6 6 1138 438 254 41 25 chr9 72521291 72521412 -51554760 + B3A SINE B2 64 186 -30 6 1138 759 170 20 20 chr9 72521519 72521669 -51554503 + B1_Mur4 SINE Alu 1 150 0 6 1138 248 329 82 0 chr9 72521715 72521885 -51554287 + L1MEa LINE L1 2567 2750 -3569 5 1138 368 284 169 17 chr9 72521906 72522078 -51554094 + B3A SINE B2 1 198 0 6 1138 325 233 137 32 chr9 72522367 72522491 -51553681 - MER54A LTR ERVL -3 898 762 6 1138 334 253 122 14 chr9 72522521 72522669 -51553503 - MER54A LTR ERVL -191 710 547 6 1138 1210 108 37 5 chr9 72522786 72522973 -51553199 - B2_Mm2 SINE B2 -2 193 1 6 1138 308 192 0 0 chr9 72522973 72523025 -51553147 + MurSatRep1 Unknown Unknown 231 282 -1855 6 1138 431 269 166 0 chr9 72523046 72523221 -51552951 + ID_B1 SINE B4 7 210 -14 6 1138 457 243 127 36 chr9 72523764 72523906 -51552266 + B3A SINE B2 1 154 -44 7 1138 417 20 0 0 chr9 72523906 72523956 -51552216 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1138 258 289 82 60 chr9 72523956 72523997 -51552175 + B2_Mm2 SINE B2 148 187 -8 7 1138 330 175 149 37 chr9 72524020 72524127 -51552045 - PB1D9 SINE Alu 0 120 2 7 1138 944 56 0 0 chr9 72524139 72524265 -51551907 - B1_Mm SINE Alu 0 147 22 7 1138 2358 229 92 43 chr9 72524279 72524924 -51551248 - RMER1B Other Other -1 1065 390 7 1138 23 0 0 0 chr9 72525343 72525366 -51550806 + AT_rich Low_complexity Low_complexity 1 23 0 7 1138 1176 42 0 7 chr9 72525434 72525579 -51550593 - B1_Mus1 SINE Alu -3 145 2 7 1138 587 40 0 0 chr9 72525587 72525663 -51550509 - B2_Mm2 SINE B2 -118 77 2 7 1138 281 75 119 32 chr9 72525813 72525881 -51550291 - L1_Mus2 LINE L1 -5 6577 6502 7 1138 1199 28 7 7 chr9 72525966 72526112 -51550060 - B1_Mus2 SINE Alu 0 147 2 7 1138 29 0 0 0 chr9 72526264 72526293 -51549879 + AT_rich Low_complexity Low_complexity 1 29 0 8 1138 713 192 192 53 chr9 72526313 72526500 -51549672 + B3 SINE B2 1 213 -3 8 1138 297 0 0 0 chr9 72526903 72526936 -51549236 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1138 595 197 119 15 chr9 72527083 72527217 -51548955 - B1_Mus1 SINE Alu 0 148 1 8 1138 213 177 12 71 chr9 72527217 72527302 -51548870 + (TTTA)n Simple_repeat Simple_repeat 2 81 0 8 1138 1097 45 8 0 chr9 72527715 72527849 -51548323 - B1_Mus1 SINE Alu -13 135 1 8 1138 236 240 135 39 chr9 72527986 72528090 -51548082 - L1M1 LINE L1 -376 5927 5814 8 1138 1640 16 21 0 chr9 72528133 72528322 -51547850 + B2_Mm1a SINE B2 1 193 0 8 1138 26 50 0 0 chr9 72528752 72528792 -51547380 + AT_rich Low_complexity Low_complexity 1 40 0 8 1138 933 125 0 0 chr9 72528873 72529017 -51547155 + B2_Mm2 SINE B2 2 145 -50 8 1138 1333 86 21 11 chr9 72529017 72529206 -51546966 + B2_Mm1a SINE B2 2 192 -1 9 1138 27 29 0 0 chr9 72529266 72529300 -51546872 + AT_rich Low_complexity Low_complexity 1 34 0 9 1138 1223 48 0 0 chr9 72529329 72529476 -51546696 + B1_Mus2 SINE Alu 1 147 0 9 1138 363 145 48 0 chr9 72530037 72530099 -51546073 + RMER10A LTR ERVL 2 66 -376 9 1138 216 0 0 0 chr9 72530168 72530192 -51545980 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1138 1003 107 14 0 chr9 72530197 72530337 -51545835 - B1_Mm SINE Alu -5 142 1 9 1138 295 284 46 26 chr9 72530551 72530703 -51545469 + L1M5 LINE L1 3406 3560 -2586 9 1138 1622 26 5 10 chr9 72530847 72531040 -51545132 - B2_Mm1t SINE B2 0 193 2 9 1138 351 240 173 0 chr9 72531365 72531469 -51544703 + B1F SINE Alu 1 122 -27 9 1138 425 211 33 0 chr9 72531394 72531484 -51544688 + ID_B1 SINE B4 126 218 -6 9 1138 390 310 9 21 chr9 72531496 72531622 -51544550 + PB1 SINE Alu 17 130 -19 1 1138 192 40 0 0 chr9 72531622 72531647 -51544525 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1 1138 1615 28 0 0 chr9 72531647 72531829 -51544343 - B2_Mm1t SINE B2 -11 182 1 1 1138 1252 101 10 26 chr9 72531871 72532064 -51544108 + B2_Mm2 SINE B2 2 191 -4 1 1138 384 284 69 0 chr9 72532117 72532233 -51543939 + B4A SINE B4 153 276 -16 1 1138 654 191 24 82 chr9 72532635 72532841 -51543331 - B3A SINE B2 0 198 5 1 1138 461 261 116 13 chr9 72533157 72533312 -51542860 + MTD LTR MaLR 25 195 -224 1 1138 25 0 0 0 chr9 72533368 72533393 -51542779 + AT_rich Low_complexity Low_complexity 1 25 0 1 1138 1177 55 7 0 chr9 72533470 72533615 -51542557 - B1_Mus2 SINE Alu 0 147 2 1 1138 545 279 22 90 chr9 72534223 72534263 -51541909 - B4 SINE B4 -8 284 250 1 1138 884 0 35 0 chr9 72534263 72534379 -51541793 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 1138 545 279 22 90 chr9 72534379 72534606 -51541566 - B4 SINE B4 -43 249 35 1 1138 495 236 0 209 chr9 72534751 72534938 -51541234 - B1F2 SINE Alu 0 149 2 1 1138 1104 103 0 0 chr9 72535043 72535189 -51540983 - B1_Mm SINE Alu 0 147 2 1 1138 394 307 68 78 chr9 72535226 72535519 -51540653 + B4A SINE B4 1 290 -2 1 1138 233 311 18 28 chr9 72535609 72535718 -51540454 + MT2C_Mm LTR ERVL 96 203 -272 1 1138 490 148 117 19 chr9 72535669 72535772 -51540400 + B1_Mur4 SINE Alu 36 148 -2 1 1138 198 0 0 0 chr9 72536032 72536054 -51540118 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1138 878 82 0 0 chr9 72536054 72536176 -51539996 - B1_Mus1 SINE Alu -9 139 18 1 1138 331 331 29 22 chr9 72536826 72536962 -51539210 + ID_B1 SINE B4 81 217 -7 1 1138 658 243 0 29 chr9 72537034 72537174 -51538998 - B1_Mur2 SINE Alu -13 136 1 1 1138 579 219 21 35 chr9 72537196 72537338 -51538834 - ID_B1 SINE B4 -2 222 83 1 1138 437 293 22 71 chr9 72537868 72537887 -51538285 - MLT2D LTR ERVL -204 260 244 1 1138 473 258 99 22 chr9 72537887 72538069 -51538103 + B3A SINE B2 1 196 -2 1 1138 449 274 17 50 chr9 72538069 72538302 -51537870 - MLT2D LTR ERVL -221 243 23 1 1138 581 279 81 16 chr9 72538768 72538954 -51537218 - ID_B1 SINE B4 -21 203 6 1 1138 1154 112 0 17 chr9 72545255 72545277 -51530895 - B2_Mm2 SINE B2 -16 179 159 1 1138 423 0 0 0 chr9 72545277 72545324 -51530848 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1138 1154 112 0 17 chr9 72545324 72545482 -51530690 - B2_Mm2 SINE B2 -37 158 2 1 1138 538 250 86 43 chr9 72545589 72545798 -51530374 - MER20 DNA MER1_type 0 219 2 1 1138 446 312 33 43 chr9 72546068 72546252 -51529920 - B3A SINE B2 -16 182 1 1 1138 232 221 232 42 chr9 72547121 72547263 -51528909 - Lx8 LINE L1 -40 7433 7265 1 1138 580 256 83 0 chr9 72547318 72547451 -51528721 + RSINE1 SINE B4 3 146 -19 1 1138 245 276 83 70 chr9 72548211 72548367 -51527805 - RMER10A LTR ERVL -13 429 272 1 1138 274 200 0 0 chr9 72548410 72548465 -51527707 + B1_Mur4 SINE Alu 96 150 0 1 1138 253 280 0 13 chr9 72549043 72549119 -51527053 - B3 SINE B2 0 216 142 1 1138 991 88 0 75 chr9 72549340 72549499 -51526673 - B1_Mm SINE Alu 0 147 1 1 1138 1019 73 73 0 chr9 72549623 72549760 -51526412 - B1_Mus1 SINE Alu 0 148 2 1 1138 252 122 0 0 chr9 72549891 72549932 -51526240 + B3A SINE B2 57 97 -101 1 1138 26 0 0 0 chr9 72550746 72550772 -51525400 + AT_rich Low_complexity Low_complexity 1 26 0 1 1138 806 144 71 14 chr9 72550870 72551011 -51525161 + B1_Mur4 SINE Alu 1 149 -1 1 1138 736 284 75 65 chr9 72551036 72551315 -51524857 + B4 SINE B4 11 292 0 1 1138 355 312 82 46 chr9 72551967 72552249 -51523923 - B4A SINE B4 0 292 1 1 1138 31 26 0 0 chr9 72552614 72552652 -51523520 + AT_rich Low_complexity Low_complexity 1 38 0 1 1138 255 146 0 0 chr9 72552702 72552757 -51523415 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1138 690 135 0 139 chr9 72552760 72552932 -51523240 - B1_Mus1 SINE Alu 0 148 1 1 1138 367 216 22 22 chr9 72553371 72553461 -51522711 - B4A SINE B4 -87 205 116 1 1138 556 212 116 28 chr9 72553511 72553695 -51522477 - B3 SINE B2 -2 214 4 1 1138 289 268 24 12 chr9 72553703 72553786 -51522386 - B4 SINE B4 -207 85 2 1 1138 1195 110 20 20 chr9 72554067 72554262 -51521910 + B2_Mm2 SINE B2 1 195 0 1 1138 430 186 60 38 chr9 72554353 72554491 -51521681 + B3 SINE B2 52 185 -10 1 1138 238 333 0 39 chr9 72554667 72554770 -51521402 - B3A SINE B2 -66 132 34 1 1138 410 231 176 17 chr9 72554768 72554887 -51521285 - B3 SINE B2 -75 141 4 1 1138 212 262 24 24 chr9 72554887 72554969 -51521203 - B4 SINE B4 -208 84 3 1 1138 3367 33 13 0 chr9 72555176 72555567 -51520605 + MTA_Mm LTR MaLR 1 396 0 1 1138 870 231 35 5 chr9 72555661 72555861 -51520311 + B3 SINE B2 1 206 -10 1 1138 576 286 23 0 chr9 72555917 72556088 -51520084 - B3A SINE B2 -23 175 1 1 1138 382 286 103 13 chr9 72557325 72557481 -51518691 + B3 SINE B2 1 170 -46 1 1138 262 209 59 17 chr9 72557724 72557818 -51518354 + B1F SINE Alu 10 103 -17 1 1138 359 232 262 6 chr9 72558396 72558564 -51517608 - B3 SINE B2 0 216 6 1 1138 26 30 0 0 chr9 72558653 72558686 -51517486 + AT_rich Low_complexity Low_complexity 1 33 0 1 1138 256 232 0 18 chr9 72558722 72558779 -51517393 + B3A SINE B2 3 58 -140 1 1138 536 127 36 0 chr9 72558779 72558889 -51517283 + (CA)n Simple_repeat Simple_repeat 1 114 0 1 1138 800 244 19 10 chr9 72559222 72559429 -51516743 - B3 SINE B2 -6 210 2 1 1138 185 65 32 0 chr9 72560848 72560879 -51515293 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1138 618 68 0 0 chr9 72560879 72560966 -51515206 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 1138 387 229 230 17 chr9 72561379 72561557 -51514615 - B3 SINE B2 0 216 1 1 1138 220 287 90 22 chr9 72561607 72561696 -51514476 - RSINE1 SINE B4 0 165 71 1 1138 222 270 92 26 chr9 72562865 72562941 -51513231 + RSINE1 SINE B4 82 162 -3 1 1138 219 146 0 0 chr9 72563095 72563136 -51513036 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 1 1138 1164 68 0 7 chr9 72563137 72563284 -51512888 - B1_Mus1 SINE Alu -1 147 2 1 1138 771 249 27 16 chr9 72563557 72563741 -51512431 + B3 SINE B2 1 186 -30 1 1138 273 290 11 11 chr9 72564852 72564946 -51511226 - ID_B1 SINE B4 -128 96 3 1 1138 564 106 0 0 chr9 72564946 72565031 -51511141 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1138 657 270 38 0 chr9 72565036 72565195 -51510977 - B3A SINE B2 -33 165 1 1 1138 595 260 93 7 chr9 72566359 72566510 -51509662 + RSINE1 SINE B4 2 165 0 1 1138 462 248 163 0 chr9 72566549 72566690 -51509482 + ID_B1 SINE B4 3 166 -58 1 1138 268 286 13 0 chr9 72566700 72566777 -51509395 - ID4_ SINE ID -2 81 4 1 1138 307 300 0 0 chr9 72566984 72567054 -51509118 + BC1_Mm scRNA scRNA 1 70 -82 1 1138 243 152 0 0 chr9 72567790 72567836 -51508336 - B3 SINE B2 -6 210 165 1 1138 771 177 0 7 chr9 72567870 72568012 -51508160 - B1_Mur3 SINE Alu 0 149 9 1 1138 359 294 0 44 chr9 72568141 72568255 -51507917 + RSINE1 SINE B4 57 165 0 1 1138 553 263 26 0 chr9 72568620 72568776 -51507396 + MTD LTR MaLR 41 200 -219 1 1138 279 240 120 0 chr9 72568787 72568887 -51507285 + MTD LTR MaLR 308 419 0 1 1138 206 77 25 25 chr9 72569958 72569998 -51506174 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1138 634 245 24 41 chr9 72570143 72570313 -51505859 - B3 SINE B2 0 216 50 1 1138 302 286 24 0 chr9 72570620 72570704 -51505468 + MER58A DNA MER1_type 14 99 -125 1 1138 1464 68 11 5 chr9 72570818 72571009 -51505163 + B2_Mm1t SINE B2 2 193 0 1 1138 338 295 37 28 chr9 72571181 72571289 -51504883 + B4 SINE B4 6 114 -178 1 1138 833 209 18 80 chr9 72571537 72571761 -51504411 - B3 SINE B2 -6 210 1 1 1138 375 73 0 0 chr9 72571780 72571835 -51504337 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 1 1138 365 164 0 0 chr9 72573966 72574033 -51502139 - B1_Mus1 SINE Alu -42 106 40 1 1138 329 48 0 0 chr9 72574449 72574491 -51501681 - HAL1-3A_ME LINE L1 -840 2018 1977 1 1138 423 183 0 0 chr9 72574492 72574574 -51501598 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1138 260 287 22 33 chr9 72574629 72574719 -51501453 - B4A SINE B4 -18 274 186 1 1138 329 310 30 30 chr9 72574733 72574866 -51501306 - B4A SINE B4 -155 137 5 1 1138 477 256 238 0 chr9 72574934 72575102 -51501070 + B3 SINE B2 1 208 -8 1 1138 1112 139 33 6 chr9 72575126 72575307 -51500865 + B2_Mm2 SINE B2 1 186 -9 1 1138 642 184 155 7 chr9 72575401 72575543 -51500629 - RSINE1 SINE B4 0 165 3 1 1138 1562 42 0 54 chr9 72576366 72576569 -51499603 - B2_Mm1a SINE B2 0 193 2 1 1138 807 244 87 10 chr9 72576634 72576778 -51499394 - ID_B1 SINE B4 0 224 66 1 1138 415 188 437 13 chr9 72576778 72576929 -51499243 - B3 SINE B2 0 216 2 1 1138 807 244 87 10 chr9 72576929 72576991 -51499181 - ID SINE ID -159 65 3 1 1138 185 342 32 48 chr9 72577116 72577242 -51498930 - MIRc SINE MIR -2 266 143 1 1138 1137 82 12 0 chr9 72577352 72577522 -51498650 + B2_Mm1a SINE B2 1 172 -21 1 1138 246 32 0 0 chr9 72577527 72577558 -51498614 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1138 572 264 12 66 chr9 72577836 72578002 -51498170 - RSINE1 SINE B4 -6 159 3 1 1138 272 262 66 28 chr9 72578254 72578360 -51497812 + PB1D10 SINE Alu 7 116 -1 2 1138 306 0 0 0 chr9 72578421 72578455 -51497717 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1138 237 331 46 23 chr9 72578472 72578602 -51497570 - B4 SINE B4 -159 133 1 2 1138 22 0 0 0 chr9 72578952 72578974 -51497198 + AT_rich Low_complexity Low_complexity 1 22 0 2 1138 1044 96 7 40 chr9 72579667 72579819 -51496353 - B1_Mus1 SINE Alu 0 148 2 2 1138 381 222 20 29 chr9 72580074 72580176 -51495996 + B1_Mur2 SINE Alu 49 149 0 2 1138 489 47 0 0 chr9 72580502 72580566 -51495606 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1138 449 235 170 6 chr9 72580598 72580769 -51495403 - B3 SINE B2 -17 199 1 2 1138 511 244 35 0 chr9 72580799 72580914 -51495258 + PB1D9 SINE Alu 2 120 0 2 1138 401 320 82 0 chr9 72580936 72581083 -51495089 - B3A SINE B2 -38 160 2 2 1138 1437 79 26 5 chr9 72581174 72581365 -51494807 + B2_Mm2 SINE B2 1 195 0 2 1138 800 84 67 0 chr9 72581568 72581687 -51494485 + B2_Mm2 SINE B2 3 129 -66 2 1138 387 0 0 0 chr9 72581706 72581749 -51494423 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 1138 396 189 51 51 chr9 72582224 72582341 -51493831 + B1_Mur4 SINE Alu 34 150 0 2 1138 1170 63 0 0 chr9 72582374 72582517 -51493655 + B1_Mm SINE Alu 5 147 0 2 1138 291 293 137 6 chr9 72583404 72583579 -51492593 - L1MB3 LINE L1 -118 6065 5868 2 1138 582 300 74 11 chr9 72583579 72583862 -51492310 - RMER15 LTR ERVL 0 575 275 2 1138 744 214 66 27 chr9 72583939 72584122 -51492050 - B3 SINE B2 0 216 27 2 1138 434 349 40 64 chr9 72584930 72585227 -51490945 + B4A SINE B4 1 290 -2 2 1138 23 68 0 0 chr9 72585546 72585590 -51490582 + AT_rich Low_complexity Low_complexity 1 44 0 2 1138 415 331 7 0 chr9 72585627 72585763 -51490409 - RSINE1 SINE B4 -28 137 1 2 1138 824 245 64 15 chr9 72585974 72586177 -51489995 - B3 SINE B2 -3 213 1 2 1138 742 221 61 28 chr9 72586194 72586408 -51489764 - ID_B1 SINE B4 0 224 4 2 1138 275 289 32 16 chr9 72586539 72586662 -51489510 - B4A SINE B4 -166 126 2 2 1138 364 240 0 39 chr9 72586729 72586807 -51489365 + ID4_ SINE ID 6 80 -3 2 1138 1213 54 0 0 chr9 72587556 72587703 -51488469 - B1_Mm SINE Alu 0 147 1 2 1138 1162 64 0 0 chr9 72587726 72587867 -51488305 - B1_Mus2 SINE Alu -5 142 2 2 1138 1271 174 16 16 chr9 72588209 72588460 -51487712 - RLTR15 LTR ERVK 0 359 109 2 1138 281 191 29 0 chr9 72588619 72588687 -51487485 + PB1D10 SINE Alu 41 110 -7 2 1138 588 251 0 63 chr9 72588716 72588890 -51487282 + RSINE1 SINE B4 3 165 0 2 1138 689 222 66 6 chr9 72589619 72589800 -51486372 + ID_B1 SINE B4 32 223 -1 2 1138 382 299 148 8 chr9 72589805 72589933 -51486239 + RSINE1 SINE B4 3 148 -17 2 1138 270 0 0 0 chr9 72589946 72589976 -51486196 + (CATA)n Simple_repeat Simple_repeat 1 30 0 2 1138 540 0 0 0 chr9 72589980 72590040 -51486132 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 2 1138 1350 87 38 0 chr9 72590062 72590247 -51485925 - B2_Mm2 SINE B2 -2 193 2 2 1138 518 143 112 0 chr9 72590282 72590380 -51485792 + B1_Mur2 SINE Alu 29 137 -12 2 1138 200 143 29 0 chr9 72590802 72590837 -51485335 + GA-rich Low_complexity Low_complexity 1 36 0 2 1138 540 251 110 0 chr9 72590838 72591001 -51485171 - B3 SINE B2 -30 186 6 2 1138 400 227 34 0 chr9 72591163 72591251 -51484921 - B1_Mus2 SINE Alu -13 134 44 2 1138 791 251 96 0 chr9 72591778 72591977 -51484195 - URR1B DNA MER1_type -6 219 2 2 1138 275 338 13 0 chr9 72592221 72592298 -51483874 + MER44C DNA MER2_type 652 729 -4 2 1138 1059 82 0 33 chr9 72592471 72592623 -51483549 - B1_Mus1 SINE Alu 0 148 2 2 1138 186 43 0 0 chr9 72592685 72592708 -51483464 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2 1138 622 211 92 27 chr9 72592708 72592893 -51483279 - B3A SINE B2 0 198 2 2 1138 451 223 27 0 chr9 72593231 72593343 -51482829 + URR1A DNA MER1_type 81 195 -31 2 1138 448 266 9 0 chr9 72593372 72593485 -51482687 + B1F SINE Alu 27 140 -9 2 1138 427 174 76 0 chr9 72593501 72593593 -51482579 + RSINE1 SINE B4 35 133 -32 2 1138 1036 102 127 0 chr9 72594469 72594635 -51481537 + B2_Mm2 SINE B2 2 188 -7 2 1138 2019 181 130 0 chr9 72598133 72598532 -51477640 + RMER1B Other Other 469 919 -147 2 1138 414 146 44 11 chr9 72598864 72598954 -51477218 + RMER1B Other Other 969 1061 -5 2 1138 22 0 0 0 chr9 72599167 72599189 -51476983 + AT_rich Low_complexity Low_complexity 1 22 0 2 1138 324 64 0 0 chr9 72599193 72599240 -51476932 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1138 606 206 71 8 chr9 72599244 72599371 -51476801 - B3 SINE B2 -75 141 7 2 1138 558 43 0 0 chr9 72599385 72599454 -51476718 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1138 1195 43 0 0 chr9 72599454 72599592 -51476580 - B1_Mm SINE Alu -8 139 2 2 1138 2317 102 6 9 chr9 72599641 72599969 -51476203 - ORR1A2 LTR MaLR 0 327 1 2 1138 273 222 41 14 chr9 72600191 72600264 -51475908 - MER33 DNA MER1_type -202 122 48 2 1138 212 167 0 0 chr9 72600417 72600459 -51475713 + GA-rich Low_complexity Low_complexity 2 43 0 2 1138 2039 153 84 8 chr9 72600731 72600916 -51475256 - ORR1C2 LTR MaLR 0 384 196 2 1138 213 108 0 0 chr9 72600916 72600953 -51475219 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 2 1138 2039 153 84 8 chr9 72600953 72601124 -51475048 - ORR1C2 LTR MaLR -189 195 3 2 1138 302 152 0 0 chr9 72601301 72601347 -51474825 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 2 1138 777 51 0 0 chr9 72601419 72601517 -51474655 + (GA)n Simple_repeat Simple_repeat 1 98 0 2 1138 895 70 121 23 chr9 72602288 72602420 -51473752 - B1_Mus1 SINE Alu -2 146 2 2 1138 684 96 0 0 chr9 72602449 72602553 -51473619 - B1_Mur4 SINE Alu 0 150 47 2 1138 247 226 0 46 chr9 72602507 72602572 -51473600 - 4.5SRNA scRNA scRNA -8 86 25 2 1138 936 153 0 0 chr9 72602584 72602734 -51473438 - B1_Mur4 SINE Alu 0 150 1 2 1138 1088 67 73 6 chr9 72602745 72602910 -51473262 - B2_Mm2 SINE B2 -11 184 9 2 1138 417 39 0 0 chr9 72602911 72602962 -51473210 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1138 853 259 15 0 chr9 72602995 72603192 -51472980 - ID_B1 SINE B4 -23 201 2 2 1138 515 308 29 23 chr9 72603322 72603495 -51472677 + ID_B1 SINE B4 39 212 -12 2 1138 285 98 0 0 chr9 72603617 72603658 -51472514 + (TGG)n Simple_repeat Simple_repeat 1 41 0 2 1138 748 128 16 16 chr9 72603663 72603790 -51472382 + B1_Mur4 SINE Alu 24 150 0 2 1138 558 43 0 0 chr9 72603791 72603860 -51472312 + (GGAAA)n Simple_repeat Simple_repeat 3 71 0 2 1138 216 111 0 0 chr9 72603860 72603896 -51472276 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 2 1138 313 214 309 0 chr9 72603902 72603986 -51472186 + PB1D9 SINE Alu 2 111 -9 2 1138 570 283 118 0 chr9 72604626 72604813 -51471359 + ID_B1 SINE B4 2 210 -14 2 1138 220 341 7 36 chr9 72606241 72606381 -51469791 + (TATG)n Simple_repeat Simple_repeat 1 136 0 2 1138 293 260 26 0 chr9 72607069 72607146 -51469026 + B3A SINE B2 105 183 -15 2 1138 1342 96 5 5 chr9 72607171 72607193 -51468979 - B2_Mm2 SINE B2 -5 190 168 2 1138 249 33 0 0 chr9 72607193 72607223 -51468949 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 1138 1342 96 5 5 chr9 72607223 72607389 -51468783 - B2_Mm2 SINE B2 -28 167 3 2 1138 949 154 14 0 chr9 72607400 72607543 -51468629 - B1_Mur4 SINE Alu -5 145 1 2 1138 1109 83 14 0 chr9 72607634 72607779 -51468393 + B1_Mus1 SINE Alu 2 148 0 2 1138 226 83 83 0 chr9 72607781 72607829 -51468343 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 2 1138 582 232 44 31 chr9 72607941 72608101 -51468071 + RSINE1 SINE B4 4 165 0 2 1138 278 205 67 67 chr9 72608102 72608191 -51467981 + B3A SINE B2 38 126 -72 2 1138 1591 47 0 15 chr9 72608371 72608566 -51467606 - B2_Mm1a SINE B2 0 193 2 2 1138 917 171 59 32 chr9 72608704 72608891 -51467281 - B2_Mm2 SINE B2 -2 193 2 2 1138 867 188 0 0 chr9 72609200 72609344 -51466828 - B1_Mus2 SINE Alu -1 146 3 2 1138 308 331 48 90 chr9 72609344 72609371 -51466801 - B4A SINE B4 -210 82 63 2 1138 220 233 0 0 chr9 72609388 72609431 -51466741 - ID4_ SINE ID -11 72 30 2 1138 650 167 51 36 chr9 72609630 72609767 -51466405 - B1_Mur2 SINE Alu -5 144 6 2 1138 1252 34 0 0 chr9 72609885 72610031 -51466141 - B1_Mm SINE Alu 0 147 2 2 1138 416 259 103 58 chr9 72610111 72610267 -51465905 - RSINE1 SINE B4 -1 164 2 2 1138 615 218 49 0 chr9 72610467 72610609 -51465563 + B1F2 SINE Alu 1 149 0 2 1138 1422 57 11 11 chr9 72611601 72611779 -51464393 + B2_Mm2 SINE B2 2 179 -16 2 1138 1192 69 0 0 chr9 72611780 72611925 -51464247 + B1_Mus2 SINE Alu 3 147 0 2 1138 491 253 96 19 chr9 72612137 72612294 -51463878 + B4 SINE B4 1 169 -123 2 1138 1620 26 0 16 chr9 72613188 72613382 -51462790 + B2_Mm1t SINE B2 2 192 -1 2 1138 243 0 0 0 chr9 72613408 72613435 -51462737 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1138 812 144 62 41 chr9 72613521 72613666 -51462506 + B1_Mur4 SINE Alu 3 150 0 2 1139 520 239 152 0 chr9 72613906 72614044 -51462128 - RSINE1 SINE B4 -4 161 3 2 1139 1103 114 0 9 chr9 72615175 72615388 -51460784 + (GAAA)n Simple_repeat Simple_repeat 1 210 0 3 1139 216 209 23 0 chr9 72615523 72615566 -51460606 + GA-rich Low_complexity Low_complexity 2 45 0 3 1139 390 69 0 0 chr9 72615567 72615625 -51460547 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1139 690 194 101 156 chr9 72615631 72615869 -51460303 + B4 SINE B4 4 228 -64 3 1139 1197 68 0 0 chr9 72615869 72616016 -51460156 + B1_Mus1 SINE Alu 2 148 0 3 1139 216 86 0 0 chr9 72616019 72616054 -51460118 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1139 257 276 26 0 chr9 72616097 72616173 -51459999 + GA-rich Low_complexity Low_complexity 2 79 0 3 1139 1033 141 134 10 chr9 72616248 72616449 -51459723 + URR1A DNA MER1_type 1 226 0 3 1139 294 293 24 0 chr9 72616644 72616726 -51459446 + B4A SINE B4 1 84 -208 3 1139 1110 150 59 63 chr9 72616792 72617013 -51459159 - URR1B DNA MER1_type -5 220 1 3 1139 414 248 10 10 chr9 72617016 72617118 -51459054 + B4A SINE B4 173 274 -18 3 1139 503 208 8 0 chr9 72617154 72617279 -51458893 + (CA)n Simple_repeat Simple_repeat 1 126 0 3 1139 504 316 67 33 chr9 72617501 72617698 -51458474 + B3A SINE B2 1 192 -6 3 1139 879 185 37 51 chr9 72618556 72618772 -51457400 - B3 SINE B2 -3 213 1 3 1139 449 291 110 67 chr9 72618847 72619164 -51457008 + MTEa LTR MaLR 1 379 0 3 1139 949 138 25 50 chr9 72619202 72619383 -51456789 + B2_Mm2 SINE B2 2 177 -18 3 1139 816 114 0 0 chr9 72619383 72619514 -51456658 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 3 1139 1180 63 0 0 chr9 72619514 72619656 -51456516 + B1_Mus2 SINE Alu 3 144 -3 3 1139 949 138 25 50 chr9 72619656 72619672 -51456500 + B2_Mm2 SINE B2 178 194 -1 3 1139 964 150 0 7 chr9 72619859 72620007 -51456165 + B1_Mur2 SINE Alu 2 148 -1 3 1139 491 277 106 12 chr9 72620017 72620273 -51455899 + L1M3 LINE L1 4974 5253 -887 3 1139 252 286 51 13 chr9 72620284 72620362 -51455810 + MT2B LTR ERVL 183 263 -338 3 1139 543 181 86 0 chr9 72620294 72620399 -51455773 + B1_Mur1 SINE Alu 36 149 0 3 1139 180 135 0 0 chr9 72620399 72620436 -51455736 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1139 358 282 135 40 chr9 72620436 72620584 -51455588 + L1M3 LINE L1 5270 5431 -753 3 1139 339 261 87 0 chr9 72620593 72620685 -51455487 + PB1D7 SINE Alu 2 101 -19 3 1139 269 281 0 15 chr9 72620726 72620791 -51455381 + B3A SINE B2 67 130 -68 3 1139 518 164 19 54 chr9 72620828 72620937 -51455235 + B1_Mur3 SINE Alu 27 136 -13 3 1139 25 0 0 0 chr9 72620937 72620962 -51455210 + AT_rich Low_complexity Low_complexity 1 25 0 3 1139 1245 92 5 52 chr9 72620962 72621156 -51455016 - B2_Mm1a SINE B2 -8 185 1 3 1139 1201 93 60 0 chr9 72621183 72621366 -51454806 + B2_Mm2 SINE B2 2 195 0 3 1139 520 118 30 6 chr9 72621393 72621515 -51454657 - B2_Mm2 SINE B2 -19 174 41 3 1139 273 162 116 14 chr9 72621606 72621675 -51454497 + L1M2 LINE L1 5744 5819 -481 3 1139 368 303 129 91 chr9 72621683 72621915 -51454257 + B4 SINE B4 42 282 -10 3 1139 196 354 50 106 chr9 72622140 72622358 -51453814 + L2b LINE L2 3138 3343 -32 3 1139 294 29 0 0 chr9 72622788 72622823 -51453349 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1139 1049 70 0 0 chr9 72622823 72622952 -51453220 + B1_Mus2 SINE Alu 4 132 -15 3 1139 1105 237 108 41 chr9 72622954 72623254 -51452918 + MTD LTR MaLR 107 399 -20 3 1139 306 0 0 0 chr9 72623256 72623290 -51452882 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1139 919 239 25 0 chr9 72623354 72623555 -51452617 - B3 SINE B2 -10 206 1 3 1139 953 270 18 4 chr9 72623555 72623773 -51452399 - B4A SINE B4 -63 229 8 3 1139 261 57 0 0 chr9 72624250 72624285 -51451887 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1139 252 0 0 0 chr9 72624298 72624326 -51451846 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1139 355 250 82 10 chr9 72624356 72624453 -51451719 + MLT1A1 LTR MaLR 305 408 0 3 1139 426 284 92 12 chr9 72624602 72624766 -51451406 - Tigger5 DNA MER2_type -2193 213 37 3 1139 411 321 29 22 chr9 72624794 72624931 -51451241 + RSINE1 SINE B4 3 140 -25 3 1139 243 0 0 0 chr9 72624936 72624963 -51451209 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1139 3173 76 0 2 chr9 72625002 72625410 -51450762 - MTB_Mm LTR MaLR 0 407 1 3 1139 1282 63 68 11 chr9 72625520 72625697 -51450475 + B2_Mm2 SINE B2 2 188 -7 3 1139 631 200 56 49 chr9 72625708 72625850 -51450322 + B1_Mur4 SINE Alu 1 143 -7 3 1139 543 274 76 54 chr9 72625859 72625945 -51450227 + ID SINE ID 1 79 -145 3 1139 573 274 62 36 chr9 72625945 72626138 -51450034 + B3A SINE B2 1 198 0 3 1139 543 274 76 54 chr9 72626138 72626236 -51449936 + ID_B1 SINE B4 80 189 -35 3 1139 231 197 27 40 chr9 72626405 72626479 -51449693 + B2_Mm1a SINE B2 5 77 -116 3 1139 494 266 39 8 chr9 72626415 72626544 -51449628 + B4A SINE B4 15 147 -145 3 1139 1178 22 22 0 chr9 72626583 72626721 -51449451 + B1_Mm SINE Alu 2 142 -5 3 1139 1316 90 26 11 chr9 72627241 72627274 -51448898 - B2_Mm2 SINE B2 0 195 159 3 1139 180 0 0 0 chr9 72627274 72627294 -51448878 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1139 1316 90 26 11 chr9 72627294 72627451 -51448721 - B2_Mm2 SINE B2 -37 158 2 3 1139 231 230 0 0 chr9 72628289 72628376 -51447796 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 1139 342 0 0 0 chr9 72629262 72629300 -51446872 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1139 21 0 0 0 chr9 72630604 72630625 -51445547 + AT_rich Low_complexity Low_complexity 1 21 0 3 1139 220 208 21 0 chr9 72630627 72630675 -51445497 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1139 334 216 10 93 chr9 72630676 72630760 -51445412 - B4A SINE B4 0 292 216 3 1139 189 0 0 0 chr9 72630760 72630781 -51445391 + (TCTCTG)n Simple_repeat Simple_repeat 4 24 0 3 1139 334 216 10 93 chr9 72630781 72630793 -51445379 - B4A SINE B4 -77 215 204 3 1139 252 200 67 0 chr9 72630782 72630827 -51445345 - PB1D9 SINE Alu -13 107 60 3 1139 827 29 0 10 chr9 72630926 72631030 -51445142 + B2_Mm2 SINE B2 1 103 -92 3 1139 204 314 0 0 chr9 72631030 72631081 -51445091 + MIRc SINE MIR 100 150 -118 3 1139 959 155 0 14 chr9 72631124 72631268 -51444904 + B1_Mus1 SINE Alu 1 142 -6 3 1139 1114 94 65 22 chr9 72631280 72631465 -51444707 + B2_Mm2 SINE B2 2 194 -1 3 1139 345 279 67 9 chr9 72631630 72631735 -51444437 + MLT1C LTR MaLR 36 146 -321 3 1139 1508 63 0 16 chr9 72631964 72632156 -51444016 - B2_Mm1a SINE B2 -4 189 1 3 1139 1375 75 11 16 chr9 72632198 72632388 -51443784 + B2_Mm1t SINE B2 2 190 -3 3 1139 1217 181 175 132 chr9 72632643 72632840 -51443332 + MTD LTR MaLR 8 208 -211 3 1139 1013 147 24 73 chr9 72632840 72632955 -51443217 + B2_Mm2 SINE B2 1 116 -79 3 1139 570 67 0 0 chr9 72632955 72633030 -51443142 + (TTTTC)n Simple_repeat Simple_repeat 2 76 0 3 1139 1167 55 0 27 chr9 72633030 72633179 -51442993 - B1_Mus1 SINE Alu -3 145 1 3 1139 1013 147 24 73 chr9 72633179 72633267 -51442905 + B2_Mm2 SINE B2 117 194 -1 3 1139 1217 181 175 132 chr9 72633267 72633464 -51442708 + MTD LTR MaLR 209 419 0 3 1139 276 297 27 13 chr9 72633478 72633553 -51442619 + MLT1C LTR MaLR 282 357 -17 3 1139 943 256 14 9 chr9 72633925 72634138 -51442034 - B3 SINE B2 0 216 3 3 1139 1810 218 135 18 chr9 72634157 72634600 -51441572 - Lx6 LINE L1 -7 7453 6959 3 1139 574 188 195 24 chr9 72634617 72634786 -51441386 - B3A SINE B2 0 198 1 3 1139 281 293 0 13 chr9 72634872 72634948 -51441224 + BC1_Mm scRNA scRNA 16 90 -62 3 1139 382 250 255 7 chr9 72634944 72635097 -51441075 + ID_B1 SINE B4 27 217 -7 3 1139 321 68 0 0 chr9 72635098 72635142 -51441030 + (TTAA)n Simple_repeat Simple_repeat 1 44 0 3 1139 1619 52 0 0 chr9 72635308 72635500 -51440672 + B2_Mm1a SINE B2 2 193 0 3 1139 269 298 38 9 chr9 72635807 72635912 -51440260 + L1MCa LINE L1 34 141 -6367 3 1139 322 298 26 9 chr9 72635936 72636051 -51440121 - RMER15 LTR ERVL -39 536 420 3 1139 680 262 52 36 chr9 72636237 72636431 -51439741 + B3A SINE B2 2 198 0 3 1139 1431 62 0 6 chr9 72636437 72636614 -51439558 + B2_Mm2 SINE B2 2 177 -18 3 1139 1356 298 120 16 chr9 72636785 72637403 -51438769 - Lx8 LINE L1 -490 6983 6302 3 1139 252 0 0 0 chr9 72637460 72637488 -51438684 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1139 305 243 20 7 chr9 72637488 72637518 -51438654 - B4 SINE B4 -46 246 216 3 1139 1359 67 0 0 chr9 72637518 72637697 -51438475 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 1139 363 251 370 12 chr9 72637697 72637781 -51438391 - B4 SINE B4 -77 215 106 3 1139 243 61 0 0 chr9 72637781 72637814 -51438358 + (CACAA)n Simple_repeat Simple_repeat 5 37 0 3 1139 363 292 105 32 chr9 72637814 72637907 -51438265 - B4 SINE B4 -187 105 2 3 1139 922 189 0 35 chr9 72639010 72639180 -51436992 - RSINE1 SINE B4 0 165 2 3 1139 276 186 0 0 chr9 72639252 72639311 -51436861 + (CATGC)n Simple_repeat Simple_repeat 3 61 0 3 1139 196 282 0 193 chr9 72639488 72639576 -51436596 - MIR3 SINE MIR -52 156 86 3 1139 395 286 113 106 chr9 72639817 72640091 -51436081 + LTR90A LTR LTR 627 902 -74 3 1139 371 162 104 39 chr9 72640203 72640280 -51435892 + ID4_ SINE ID 2 83 0 3 1139 225 182 68 0 chr9 72640281 72640325 -51435847 + polypurine Low_complexity Low_complexity 4 50 0 3 1139 1204 233 62 7 chr9 72640601 72640873 -51435299 + B4A SINE B4 2 288 -4 3 1139 452 309 80 64 chr9 72641247 72641401 -51434771 + L1_Mur3 LINE L1 1780 1926 -3954 3 1139 1652 47 0 0 chr9 72641401 72641593 -51434579 + B2_Mm1a SINE B2 2 193 0 3 1139 452 309 80 64 chr9 72641593 72641826 -51434346 + L1_Mur3 LINE L1 1927 2173 -3707 3 1139 500 268 16 0 chr9 72641948 72642071 -51434101 + L1_Mur3 LINE L1 2154 2278 -3602 3 1139 1680 32 0 0 chr9 72642071 72642261 -51433911 + B2_Mm1a SINE B2 2 191 -2 3 1139 435 285 56 94 chr9 72642278 72642391 -51433781 + MT2B LTR ERVL 51 255 -346 3 1139 745 100 0 0 chr9 72642391 72642491 -51433681 + B1_Mm SINE Alu 1 100 -47 3 1139 284 111 0 0 chr9 72642486 72642531 -51433641 - B1_Mur4 SINE Alu -104 46 2 4 1139 217 167 0 186 chr9 72642531 72642545 -51433627 - B4A SINE B4 -162 130 83 4 1139 2205 241 36 30 chr9 72642548 72643159 -51433013 + L1_Mur3 LINE L1 4830 5444 -436 3 1139 1012 233 5 18 chr9 72643191 72643410 -51432762 + B3 SINE B2 1 216 0 4 1139 233 220 0 48 chr9 72643413 72643426 -51432746 + MT2B2 LTR ERVL 153 162 -422 4 1139 253 224 0 20 chr9 72643426 72643476 -51432696 + B1_Mur4 SINE Alu 2 50 -100 4 1139 871 141 30 0 chr9 72643523 72643658 -51432514 - B1_Mus1 SINE Alu -8 140 2 4 1139 231 274 135 45 chr9 72643839 72643950 -51432222 + MLT1J1 LTR MaLR 30 150 -294 4 1139 392 302 28 19 chr9 72644084 72644192 -51431980 - PB1D7 SINE Alu -11 109 1 4 1139 572 266 0 38 chr9 72644192 72644233 -51431939 - ID SINE ID -148 76 41 4 1139 500 321 58 0 chr9 72644471 72644608 -51431564 + RSINE1 SINE B4 9 153 -12 4 1139 1206 54 0 7 chr9 72644672 72644821 -51431351 + B1_Mus1 SINE Alu 1 148 0 4 1139 240 59 0 0 chr9 72644842 72644876 -51431296 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1139 1340 80 21 0 chr9 72645535 72645722 -51430450 - B2_Mm1a SINE B2 -1 192 2 4 1139 361 259 6 140 chr9 72645724 72645895 -51430277 - B3A SINE B2 0 198 48 4 1139 307 260 41 151 chr9 72645875 72646047 -51430125 + MT2B LTR ERVL 112 264 -337 4 1139 433 331 91 7 chr9 72645905 72645941 -51430231 + B4 SINE B4 50 97 -195 4 1139 784 118 59 0 chr9 72645941 72646060 -51430112 + B1_Mus1 SINE Alu 1 126 -22 4 1139 216 0 0 0 chr9 72646060 72646084 -51430088 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1139 236 220 0 20 chr9 72646171 72646242 -51429930 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 4 1139 675 235 15 0 chr9 72646393 72646525 -51429647 + RSINE1 SINE B4 3 136 -29 4 1139 1167 117 0 0 chr9 72646576 72646756 -51429416 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1139 1320 90 0 17 chr9 72646760 72646941 -51429231 - B2_Mm2 SINE B2 -15 180 3 4 1139 285 247 42 147 chr9 72647039 72647057 -51429115 + YREP_Mm Unknown Unknown 127 146 -1666 4 1139 936 106 49 14 chr9 72647057 72647200 -51428972 - B1_Mus1 SINE Alu 0 148 1 4 1139 285 247 42 147 chr9 72647200 72647371 -51428801 + YREP_Mm Unknown Unknown 147 296 -1516 4 1139 853 254 6 0 chr9 72647248 72647417 -51428755 - ID_B1 SINE B4 0 224 55 4 1139 189 0 0 0 chr9 72647417 72647438 -51428734 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1139 585 273 48 152 chr9 72647442 72647757 -51428415 - B4 SINE B4 -10 282 1 4 1139 375 154 0 0 chr9 72647758 72647823 -51428349 + CT-rich Low_complexity Low_complexity 2 66 0 4 1139 480 306 81 51 chr9 72647823 72647976 -51428196 - B4 SINE B4 -49 243 81 4 1139 1005 118 0 14 chr9 72647976 72648108 -51428064 + B1_Mus1 SINE Alu 5 136 -12 4 1139 293 47 0 23 chr9 72648108 72648152 -51428020 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 4 1139 1005 118 0 14 chr9 72648152 72648165 -51428007 + B1_Mus1 SINE Alu 137 147 -1 4 1139 480 306 81 51 chr9 72648165 72648245 -51427927 - B4 SINE B4 -212 80 3 4 1139 379 225 0 0 chr9 72649129 72649200 -51426972 - RSINE1 SINE B4 -92 73 3 4 1139 1062 52 0 43 chr9 72649224 72649365 -51426807 - B1_Mus1 SINE Alu -13 135 1 4 1139 665 230 60 65 chr9 72649447 72649500 -51426672 + B3 SINE B2 11 63 -153 4 1139 1664 36 0 0 chr9 72649500 72649692 -51426480 + B2_Mm1a SINE B2 2 193 0 4 1139 665 230 60 65 chr9 72649692 72649838 -51426334 + B3 SINE B2 64 209 -7 4 1139 325 111 0 0 chr9 72649873 72649936 -51426236 - L1Md_F2 LINE L1 -1 6581 6519 4 1139 315 0 0 0 chr9 72650051 72650086 -51426086 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1139 204 40 0 0 chr9 72650639 72650664 -51425508 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1139 248 234 47 0 chr9 72650727 72650791 -51425381 + (TATG)n Simple_repeat Simple_repeat 4 70 0 4 1139 477 224 154 6 chr9 72650839 72651001 -51425171 - B3 SINE B2 -30 186 1 4 1139 815 251 51 5 chr9 72651001 72651214 -51424958 - B4A SINE B4 -62 230 8 4 1139 1194 108 38 5 chr9 72651901 72652087 -51424085 - B2_Mm2 SINE B2 -3 192 1 4 1139 423 213 395 13 chr9 72652114 72652271 -51423901 + ID_B1 SINE B4 1 217 -7 4 1139 339 25 0 0 chr9 72652273 72652313 -51423859 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1139 764 262 5 45 chr9 72652313 72652513 -51423659 + B3A SINE B2 7 198 0 4 1139 288 242 56 112 chr9 72652553 72652660 -51423512 + ID4_ SINE ID 2 102 -50 4 1139 1278 196 146 22 chr9 72652813 72653011 -51423161 + MTD LTR MaLR 1 216 -203 4 1139 1002 80 0 0 chr9 72653011 72653161 -51423011 + (CA)n Simple_repeat Simple_repeat 1 150 0 4 1139 1278 196 146 22 chr9 72653161 72653285 -51422887 + MTD LTR MaLR 217 363 -56 4 1139 183 346 72 24 chr9 72653287 72653370 -51422802 + MIRc SINE MIR 160 246 -22 4 1139 293 219 12 110 chr9 72653684 72653766 -51422406 + B1F SINE Alu 76 149 0 4 1139 195 162 0 0 chr9 72655288 72655325 -51420847 + (CTG)n Simple_repeat Simple_repeat 2 38 0 4 1139 248 175 0 34 chr9 72656016 72656075 -51420097 + CT-rich Low_complexity Low_complexity 3 59 0 4 1139 234 0 0 0 chr9 72656351 72656377 -51419795 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1139 210 37 0 0 chr9 72658152 72658179 -51417993 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 4 1139 983 179 169 0 chr9 72658197 72658381 -51417791 - B3 SINE B2 -1 215 1 4 1139 229 270 0 31 chr9 72659424 72659489 -51416683 + tRNA-Ala-GCY_ tRNA tRNA 1 63 -12 4 1139 394 264 27 36 chr9 72659675 72659785 -51416387 + PB1D10 SINE Alu 1 109 -8 4 1139 432 0 0 0 chr9 72660112 72660160 -51416012 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1139 216 175 0 0 chr9 72660301 72660364 -51415808 + T-rich Low_complexity Low_complexity 1 63 0 4 1139 26 0 0 0 chr9 72661363 72661389 -51414783 + AT_rich Low_complexity Low_complexity 1 26 0 4 1139 372 125 0 0 chr9 72662348 72662412 -51413760 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1139 799 135 76 47 chr9 72662868 72663039 -51413133 - L1_Mus4 LINE L1 -4 6632 6457 4 1139 709 239 71 47 chr9 72663200 72663411 -51412761 - B3 SINE B2 0 216 1 4 1139 22 35 0 0 chr9 72663449 72663478 -51412694 + AT_rich Low_complexity Low_complexity 1 29 0 4 1139 712 183 250 0 chr9 72664139 72664303 -51411869 - B3 SINE B2 -11 205 1 4 1139 306 0 0 0 chr9 72664344 72664378 -51411794 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1139 919 249 25 15 chr9 72664437 72664637 -51411535 - B4A SINE B4 -89 203 2 4 1139 245 289 26 13 chr9 72664768 72664845 -51411327 - ID4_ SINE ID -2 81 4 4 1139 984 168 137 0 chr9 72664869 72665059 -51411113 - B3 SINE B2 0 216 1 4 1139 1171 58 0 0 chr9 72665232 72665371 -51410801 - B1_Mus1 SINE Alu -9 139 1 4 1139 747 225 20 7 chr9 72665756 72665908 -51410264 - RSINE1 SINE B4 0 165 12 4 1139 735 235 52 0 chr9 72665990 72666143 -51410029 - RSINE1 SINE B4 -2 163 3 4 1139 21 36 0 0 chr9 72666253 72666281 -51409891 + AT_rich Low_complexity Low_complexity 1 28 0 4 1139 318 306 25 0 chr9 72666431 72666591 -51409581 + (TG)n Simple_repeat Simple_repeat 1 164 0 4 1139 492 270 62 51 chr9 72666738 72666933 -51409239 + B3A SINE B2 1 197 -1 4 1139 344 301 69 32 chr9 72667099 72667288 -51408884 - B4A SINE B4 -58 234 39 4 1139 1767 185 62 10 chr9 72667310 72667697 -51408475 + MTD LTR MaLR 13 419 0 4 1139 429 283 27 27 chr9 72667836 72667985 -51408187 - B4A SINE B4 -128 164 16 4 1139 917 162 146 10 chr9 72668082 72668281 -51407891 - URR1A DNA MER1_type 0 226 1 4 1139 807 205 37 65 chr9 72668530 72668744 -51407428 + B3 SINE B2 4 211 -5 4 1139 375 323 31 19 chr9 72668949 72669110 -51407062 - B4A SINE B4 -128 164 2 4 1139 315 0 0 0 chr9 72669170 72669205 -51406967 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1139 1109 73 0 0 chr9 72669205 72669342 -51406830 - B1_Mm SINE Alu -10 137 1 4 1139 381 348 0 7 chr9 72670096 72670238 -51405934 - RSINE1 SINE B4 -12 153 13 4 1139 1367 80 0 6 chr9 72670309 72670485 -51405687 - B2_Mm2 SINE B2 -19 176 2 4 1139 450 94 0 0 chr9 72670709 72670773 -51405399 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 1139 464 258 13 44 chr9 72671044 72671202 -51404970 + CT-rich Low_complexity Low_complexity 1 153 0 4 1139 498 224 0 0 chr9 72671698 72671814 -51404358 + T-rich Low_complexity Low_complexity 1 116 0 4 1139 978 40 0 0 chr9 72671819 72671944 -51404228 - B1_Mus1 SINE Alu 0 148 24 4 1139 1415 40 62 0 chr9 72672101 72672278 -51403894 - B2_Mm1a SINE B2 -4 189 2 4 1139 1158 57 6 0 chr9 72672306 72672465 -51403707 + B2_Mm2 SINE B2 2 161 -34 4 1139 180 0 0 0 chr9 72672466 72672486 -51403686 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1139 369 0 0 0 chr9 72672545 72672586 -51403586 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1139 23 33 0 0 chr9 72672877 72672907 -51403265 + AT_rich Low_complexity Low_complexity 1 30 0 4 1139 571 242 135 12 chr9 72672925 72673088 -51403084 - B3A SINE B2 -15 183 1 4 1139 958 264 69 11 chr9 72674128 72674404 -51401768 - B4A SINE B4 0 292 1 4 1139 464 173 12 0 chr9 72674568 72674649 -51401523 - B3 SINE B2 -107 109 28 4 1139 309 51 0 0 chr9 72674749 72674788 -51401384 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 4 1139 1176 35 27 14 chr9 72674847 72674993 -51401179 + B1_Mus1 SINE Alu 1 148 0 4 1139 500 229 28 9 chr9 72675459 72675565 -51400607 - PB1D9 SINE Alu -12 108 1 4 1139 379 100 29 0 chr9 72675603 72675673 -51400499 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1139 267 173 74 0 chr9 72675763 72675844 -51400328 + (TCCA)n Simple_repeat Simple_repeat 3 89 0 5 1139 370 236 23 11 chr9 72675851 72676027 -51400145 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 5 1139 639 193 28 12 chr9 72676027 72676278 -51399894 + (TCCA)n Simple_repeat Simple_repeat 1 255 0 5 1139 659 301 30 47 chr9 72677215 72677235 -51398937 - B4A SINE B4 0 292 273 5 1139 546 91 0 0 chr9 72677235 72677312 -51398860 + (TG)n Simple_repeat Simple_repeat 1 77 0 5 1139 294 50 0 0 chr9 72677312 72677351 -51398821 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1139 659 301 30 47 chr9 72677351 72677625 -51398547 - B4A SINE B4 -20 272 3 5 1139 390 115 0 0 chr9 72677666 72677727 -51398445 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1139 323 296 54 31 chr9 72677727 72677856 -51398316 - RSINE1 SINE B4 -20 145 14 5 1139 1627 121 4 4 chr9 72677976 72678226 -51397946 + MTC LTR MaLR 168 417 -4 5 1139 575 169 8 0 chr9 72678716 72678840 -51397332 + (CCCA)n Simple_repeat Simple_repeat 4 128 0 5 1139 531 250 50 0 chr9 72678865 72678985 -51397187 - RSINE1 SINE B4 -36 129 4 5 1139 817 199 14 0 chr9 72679013 72679159 -51397013 + B1F2 SINE Alu 2 149 0 5 1139 957 156 210 0 chr9 72679229 72679396 -51396776 + B3 SINE B2 1 202 -14 5 1139 1015 198 73 0 chr9 72679415 72679607 -51396565 + B3 SINE B2 1 206 -10 5 1139 525 307 60 56 chr9 72679815 72680081 -51396091 - B4A SINE B4 0 292 26 5 1139 305 290 2 2 chr9 72680344 72680447 -51395725 - L1MD LINE L1 -599 5745 5643 5 1139 522 114 0 0 chr9 72680468 72680556 -51395616 + (TG)n Simple_repeat Simple_repeat 2 89 0 5 1139 748 210 120 0 chr9 72680579 72680746 -51395426 + B3 SINE B2 1 187 -29 5 1139 940 137 14 7 chr9 72680765 72680912 -51395260 - B1_Mur4 SINE Alu -1 149 2 5 1139 333 198 36 36 chr9 72680946 72681030 -51395142 - L1M5 LINE L1 -562 5600 5517 5 1139 357 243 0 0 chr9 72681103 72681210 -51394962 + (TG)n Simple_repeat Simple_repeat 1 107 0 5 1139 657 294 60 34 chr9 72681227 72681495 -51394677 - B4A SINE B4 -13 279 5 5 1139 195 224 0 0 chr9 72681568 72681644 -51394528 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1139 23 33 0 0 chr9 72682467 72682497 -51393675 + AT_rich Low_complexity Low_complexity 1 30 0 5 1139 392 321 29 0 chr9 72682514 72682654 -51393518 - RSINE1 SINE B4 -17 148 5 5 1139 186 149 0 0 chr9 72682659 72682690 -51393482 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1139 1113 89 7 0 chr9 72682690 72682836 -51393336 - B1_Mus1 SINE Alu -1 147 1 5 1139 186 149 0 0 chr9 72682836 72682851 -51393321 + (T)n Simple_repeat Simple_repeat 1 15 0 5 1139 23 0 0 0 chr9 72683219 72683242 -51392930 + AT_rich Low_complexity Low_complexity 1 23 0 5 1139 459 0 0 0 chr9 72683247 72683298 -51392874 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1139 650 249 18 24 chr9 72683301 72683470 -51392702 - B3A SINE B2 -30 168 1 5 1139 21 0 0 0 chr9 72684204 72684225 -51391947 + AT_rich Low_complexity Low_complexity 1 21 0 5 1139 192 200 0 0 chr9 72684226 72684266 -51391906 + CT-rich Low_complexity Low_complexity 1 40 0 5 1139 317 278 82 10 chr9 72684267 72684365 -51391807 - PB1D9 SINE Alu -15 105 1 5 1139 500 259 74 74 chr9 72684988 72685259 -51390913 + B4A SINE B4 2 272 -20 5 1139 302 213 64 39 chr9 72685579 72685657 -51390515 - ID4_ SINE ID -3 80 1 5 1139 718 144 0 17 chr9 72686858 72686978 -51389194 - B1_Mur2 SINE Alu -9 140 23 5 1139 267 308 29 9 chr9 72687012 72687117 -51389055 - B3A SINE B2 -75 123 17 5 1139 690 237 114 14 chr9 72687264 72687474 -51388698 - MTEb LTR MaLR -2 377 147 5 1139 621 270 6 41 chr9 72687704 72687874 -51388298 + RSINE1 SINE B4 2 165 0 5 1139 203 61 30 0 chr9 72688010 72688043 -51388129 + (GTTTG)n Simple_repeat Simple_repeat 1 34 0 5 1139 392 172 0 0 chr9 72688043 72688107 -51388065 - PB1D9 SINE Alu -49 71 8 5 1139 423 0 0 0 chr9 72688275 72688322 -51387850 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 5 1139 1186 68 0 0 chr9 72688322 72688469 -51387703 - B1_Mus1 SINE Alu 0 148 2 5 1139 871 225 24 19 chr9 72688507 72688720 -51387452 - B3 SINE B2 0 216 3 5 1139 340 281 138 51 chr9 72688726 72688921 -51387251 - Charlie1b DNA MER1_type -258 265 54 5 1139 1324 106 11 0 chr9 72689013 72689202 -51386970 + B2_Mm1a SINE B2 1 191 -2 5 1139 29 28 0 0 chr9 72689948 72689984 -51386188 + AT_rich Low_complexity Low_complexity 1 36 0 5 1139 201 74 0 0 chr9 72689988 72690015 -51386157 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1139 526 213 0 44 chr9 72690031 72690144 -51386028 - B3A SINE B2 -89 109 2 5 1139 489 246 81 59 chr9 72690827 72691013 -51385159 + B3A SINE B2 3 192 -6 5 1139 1469 49 38 0 chr9 72691161 72691344 -51384828 + B2_Mm2 SINE B2 4 193 -2 5 1139 895 131 13 27 chr9 72691369 72691518 -51384654 - B1_Mus1 SINE Alu 0 148 2 5 1139 1225 288 88 29 chr9 72691532 72691905 -51384267 - RCHARR1 DNA MER1_type -451 523 113 5 1139 1618 32 11 0 chr9 72691905 72692091 -51384081 - B2_Mm2 SINE B2 -7 188 1 5 1139 1225 288 88 29 chr9 72692091 72692193 -51383979 - RCHARR1 DNA MER1_type -862 112 20 5 1139 282 273 10 10 chr9 72692945 72693045 -51383127 - PB1D10 SINE Alu -1 116 17 5 1139 1283 105 20 26 chr9 72693089 72693284 -51382888 - B2_Mm2 SINE B2 0 195 2 5 1139 3182 77 0 7 chr9 72693306 72693725 -51382447 - L1_Mus2 LINE L1 -1 6565 6150 5 1139 2854 168 39 28 chr9 72693892 72694461 -51381711 - RMER15 LTR ERVL 0 575 1 5 1139 373 233 58 36 chr9 72694462 72694600 -51381572 + L1MB8 LINE L1 6038 6178 0 5 1139 1379 108 5 5 chr9 72694628 72694823 -51381349 + B2_Mm2 SINE B2 1 195 0 5 1139 286 204 21 35 chr9 72694830 72694867 -51381305 + polypurine Low_complexity Low_complexity 1 37 0 5 1139 804 141 66 7 chr9 72694867 72695003 -51381169 + B1_Mur4 SINE Alu 1 144 -6 5 1139 286 204 21 35 chr9 72695003 72695037 -51381135 + polypurine Low_complexity Low_complexity 38 67 0 5 1139 512 267 138 48 chr9 72695037 72695305 -51380867 + B4A SINE B4 1 292 0 5 1139 286 204 21 35 chr9 72695305 72695374 -51380798 + GA-rich Low_complexity Low_complexity 68 139 0 5 1139 445 277 57 28 chr9 72695407 72695548 -51380624 + ID_B1 SINE B4 80 224 0 5 1139 219 122 68 0 chr9 72695551 72695625 -51380547 + A-rich Low_complexity Low_complexity 2 80 0 5 1139 780 91 0 0 chr9 72696376 72696486 -51379686 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1139 683 197 46 7 chr9 72696487 72696640 -51379532 - B3A SINE B2 -39 159 1 5 1139 1232 208 51 145 chr9 72697009 72697424 -51378748 - MTE2a LTR MaLR -2 377 2 5 1139 635 232 16 0 chr9 72698117 72698242 -51377930 + B1_Mur1 SINE Alu 12 138 -11 5 1139 1148 37 0 0 chr9 72698415 72698551 -51377621 + B1_Mm SINE Alu 2 137 -10 5 1139 204 125 0 0 chr9 72698563 72698595 -51377577 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1139 754 48 10 0 chr9 72698629 72698732 -51377440 - B1_Mus2 SINE Alu 0 147 44 5 1139 272 232 0 28 chr9 72698677 72698748 -51377424 - RLTR25A LTR ERVK -531 572 504 5 1139 1174 119 6 17 chr9 72698802 72698982 -51377190 + B2_Mm1t SINE B2 2 179 -14 5 1139 438 54 268 9 chr9 72699009 72699124 -51377048 + B2_Mm2 SINE B2 46 195 0 5 1139 791 281 10 5 chr9 72699594 72699794 -51376378 + ID_B1 SINE B4 14 214 -10 5 1139 180 0 0 0 chr9 72700034 72700054 -51376118 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1139 1164 48 0 20 chr9 72700054 72700204 -51375968 - B1_Mus1 SINE Alu 0 148 2 5 1139 756 148 73 15 chr9 72700524 72700661 -51375511 - B1F2 SINE Alu -4 145 1 5 1139 939 127 21 7 chr9 72700713 72700856 -51375316 - B1_Mus2 SINE Alu -2 145 1 5 1139 331 234 20 50 chr9 72700923 72701022 -51375150 + ID4 SINE ID 2 97 -55 5 1139 468 279 156 12 chr9 72701076 72701236 -51374936 + B3 SINE B2 1 183 -33 5 1139 592 147 9 9 chr9 72702610 72702720 -51373452 - B1_Mur4 SINE Alu -1 149 40 5 1139 213 94 0 0 chr9 72703112 72703144 -51373028 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1139 528 342 7 0 chr9 72703148 72703297 -51372875 - B3A SINE B2 -47 151 2 5 1139 232 387 84 7 chr9 72703345 72703488 -51372684 - RSINE1 SINE B4 -7 158 5 5 1139 21 57 0 0 chr9 72703506 72703541 -51372631 + AT_rich Low_complexity Low_complexity 1 35 0 5 1139 292 164 22 122 chr9 72703552 72703642 -51372530 + ID4_ SINE ID 2 82 -1 5 1139 396 0 0 0 chr9 72703775 72703819 -51372353 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1139 352 278 40 40 chr9 72703832 72703933 -51372239 + B3 SINE B2 97 197 -19 5 1139 28 48 0 0 chr9 72704174 72704216 -51371956 + AT_rich Low_complexity Low_complexity 1 42 0 5 1139 1096 177 24 5 chr9 72705020 72705230 -51370942 - B3 SINE B2 -1 215 2 5 1139 233 296 56 0 chr9 72705309 72705380 -51370792 + ID4_ SINE ID 2 76 -7 5 1139 507 280 39 67 chr9 72705321 72705501 -51370671 + ID_B1 SINE B4 19 193 -31 5 1139 1367 69 40 0 chr9 72705834 72706007 -51370165 + B2_Mm2 SINE B2 2 181 -14 5 1139 198 0 0 0 chr9 72706007 72706029 -51370143 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 5 1139 282 73 0 0 chr9 72706249 72706290 -51369882 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1139 513 246 40 0 chr9 72706296 72706422 -51369750 - RSINE1 SINE B4 -30 135 5 6 1139 237 266 47 0 chr9 72707072 72707136 -51369036 + RSINE1 SINE B4 97 163 -2 6 1139 7904 35 17 0 chr9 72707215 72708144 -51368028 + L1Md_F2 LINE L1 5638 6582 0 6 1139 280 257 0 14 chr9 72708415 72708486 -51367686 + ID4_ SINE ID 2 71 -12 6 1139 1577 32 27 0 chr9 72708912 72709100 -51367072 - B2_Mm1a SINE B2 0 193 1 6 1139 507 207 43 8 chr9 72709325 72709442 -51366730 + B3A SINE B2 2 122 -76 6 1139 858 232 82 0 chr9 72709496 72709690 -51366482 + B3 SINE B2 1 210 -6 6 1139 447 246 43 14 chr9 72709929 72710069 -51366103 + ID_B1 SINE B4 81 224 0 6 1139 378 241 130 41 chr9 72710139 72710308 -51365864 - B3A SINE B2 -14 184 1 6 1139 403 281 121 85 chr9 72710526 72710798 -51365374 + B4 SINE B4 1 282 -10 6 1139 207 69 0 0 chr9 72710818 72710847 -51365325 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1139 1044 226 81 26 chr9 72711022 72711295 -51364877 - B4A SINE B4 -4 288 1 6 1139 546 29 0 0 chr9 72711668 72711736 -51364436 + (GGGAA)n Simple_repeat Simple_repeat 1 68 0 6 1139 244 65 21 42 chr9 72712890 72712938 -51363234 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 6 1139 919 103 20 33 chr9 72712938 72713088 -51363084 - B1_Mur4 SINE Alu -1 149 2 6 1139 29 28 0 0 chr9 72713099 72713135 -51363037 + AT_rich Low_complexity Low_complexity 1 36 0 6 1139 351 234 117 0 chr9 72713146 72713240 -51362932 - RSINE1 SINE B4 -31 134 30 6 1139 257 287 73 52 chr9 72713827 72713890 -51362282 - B1F1 SINE Alu 0 149 11 6 1139 340 233 0 0 chr9 72713890 72713963 -51362209 - ID_B1 SINE B4 -60 164 92 6 1139 360 0 0 0 chr9 72714036 72714076 -51362096 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1139 1018 249 14 5 chr9 72714819 72715033 -51361139 + B3 SINE B2 1 216 0 6 1139 409 225 34 0 chr9 72715066 72715155 -51361017 + PB1D7 SINE Alu 9 100 -20 6 1139 440 235 90 15 chr9 72715257 72715391 -51360781 - B3 SINE B2 -46 170 27 6 1139 284 221 58 0 chr9 72715485 72715571 -51360601 + PB1D7 SINE Alu 29 119 -1 6 1139 288 70 0 0 chr9 72715787 72715830 -51360342 + (TTTTTA)n Simple_repeat Simple_repeat 4 46 0 6 1139 431 316 0 25 chr9 72715837 72715957 -51360215 - ID_B1 SINE B4 -26 198 82 6 1139 646 225 35 79 chr9 72717049 72717252 -51358920 - B3A SINE B2 0 198 5 6 1139 454 240 81 68 chr9 72717312 72717473 -51358699 + B4A SINE B4 71 233 -59 6 1139 195 323 30 30 chr9 72717600 72717699 -51358473 + MIRb SINE MIR 6 104 -164 6 1139 390 200 25 0 chr9 72717915 72717995 -51358177 - MTEa LTR MaLR 0 379 298 6 1139 518 198 8 59 chr9 72718002 72718120 -51358052 - B1_Mus2 SINE Alu -34 113 2 6 1139 469 302 38 77 chr9 72718464 72718751 -51357421 + Lx8 LINE L1 7196 7471 -2 6 1139 186 43 0 0 chr9 72719065 72719088 -51357084 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1139 186 103 0 0 chr9 72719368 72719397 -51356775 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1139 288 0 0 0 chr9 72720206 72720238 -51355934 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1139 1047 111 87 0 chr9 72721197 72721369 -51354803 + B2_Mm2 SINE B2 1 187 -8 6 1139 22 0 0 0 chr9 72721493 72721515 -51354657 + AT_rich Low_complexity Low_complexity 1 22 0 6 1139 621 305 37 16 chr9 72721515 72721705 -51354467 + B4 SINE B4 1 194 -98 6 1139 716 168 99 0 chr9 72721834 72721965 -51354207 - B1_Mur4 SINE Alu -5 145 2 6 1139 221 289 40 0 chr9 72722154 72722230 -51353942 - L2c LINE L2 -224 3163 3085 6 1139 348 248 9 62 chr9 72722361 72722473 -51353699 - PB1D10 SINE Alu -9 108 3 6 1139 210 37 0 0 chr9 72722569 72722596 -51353576 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 6 1139 291 93 0 0 chr9 72722899 72722942 -51353230 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1139 664 269 29 81 chr9 72722946 72723254 -51352918 - B4A SINE B4 0 292 1 6 1139 211 132 26 0 chr9 72723565 72723603 -51352569 + B2_Mm1t SINE B2 3 41 -152 6 1139 690 209 131 6 chr9 72723769 72723952 -51352220 + B3 SINE B2 1 206 -10 6 1139 21 71 0 0 chr9 72723955 72723997 -51352175 + AT_rich Low_complexity Low_complexity 1 42 0 6 1139 1200 48 0 13 chr9 72724107 72724256 -51351916 + B1_Mus1 SINE Alu 1 147 -1 6 1139 240 232 43 14 chr9 72724398 72724468 -51351704 - ID4 SINE ID -9 74 3 6 1139 642 257 31 36 chr9 72724486 72724680 -51351492 + B3A SINE B2 2 194 -4 6 1139 495 264 0 146 chr9 72724727 72724940 -51351232 + B3A SINE B2 1 182 -16 6 1139 231 36 0 0 chr9 72724974 72725002 -51351170 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1139 533 309 169 41 chr9 72725090 72725309 -51350863 - B4A SINE B4 -1 291 45 6 1139 640 309 6 6 chr9 72725354 72725517 -51350655 + RSINE1 SINE B4 1 163 -2 6 1139 318 80 0 0 chr9 72725549 72725599 -51350573 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1139 576 252 7 33 chr9 72726510 72726662 -51349510 - B1_Mur1 SINE Alu -1 148 1 6 1139 415 200 35 12 chr9 72726757 72726843 -51349329 - B3 SINE B2 -21 195 108 6 1139 787 165 0 35 chr9 72729669 72729813 -51346359 + B1_Mur3 SINE Alu 11 149 0 6 1139 183 129 0 0 chr9 72729935 72729966 -51346206 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1139 1191 62 0 7 chr9 72729966 72730113 -51346059 - B1_Mus2 SINE Alu 0 147 2 6 1139 1115 200 239 30 chr9 72730152 72730487 -51345685 + MTD LTR MaLR 1 405 -14 6 1139 320 43 22 0 chr9 72731339 72731385 -51344787 + (CCCCCA)n Simple_repeat Simple_repeat 1 47 0 6 1139 738 218 10 105 chr9 72731547 72731616 -51344556 - B3A SINE B2 -16 182 129 6 1139 267 31 0 0 chr9 72731616 72731648 -51344524 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1139 738 218 10 105 chr9 72731648 72731778 -51344394 - B3A SINE B2 -70 128 2 6 1139 388 333 60 28 chr9 72732108 72732290 -51343882 + B3A SINE B2 26 213 -3 6 1139 186 43 0 0 chr9 72732591 72732614 -51343558 + (TTAG)n Simple_repeat Simple_repeat 2 24 0 6 1139 1189 35 0 28 chr9 72732615 72732760 -51343412 - B1_Mm SINE Alu -6 141 1 6 1139 219 292 40 27 chr9 72733256 72733330 -51342842 - MIRc SINE MIR -116 152 78 6 1139 534 234 19 99 chr9 72733353 72733514 -51342658 - B1_Mur1 SINE Alu 0 149 2 6 1139 461 257 176 0 chr9 72733565 72733701 -51342471 + RSINE1 SINE B4 2 161 -4 6 1139 705 253 15 35 chr9 72733761 72733958 -51342214 + B3A SINE B2 2 194 -4 6 1139 413 298 19 38 chr9 72734376 72734533 -51341639 + RSINE1 SINE B4 2 155 -10 6 1139 333 100 0 0 chr9 72734556 72734606 -51341566 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1139 34 42 0 0 chr9 72734606 72734654 -51341518 + AT_rich Low_complexity Low_complexity 1 48 0 6 1139 583 213 28 130 chr9 72734726 72734828 -51341344 - B3A SINE B2 0 198 105 6 1139 1196 87 37 26 chr9 72734828 72734858 -51341314 - B2_Mm1a SINE B2 -1 192 161 6 1139 207 0 0 0 chr9 72734858 72734881 -51341291 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1139 1196 87 37 26 chr9 72734881 72735040 -51341132 - B2_Mm1a SINE B2 -33 160 1 6 1139 550 179 202 8 chr9 72735044 72735168 -51341004 - B1_Mur3 SINE Alu 0 149 2 6 1139 583 213 28 130 chr9 72735168 72735276 -51340896 - B3A SINE B2 -94 104 5 6 1139 401 232 34 11 chr9 72735309 72735408 -51340764 + PB1D10 SINE Alu 11 121 -6 6 1139 760 209 85 0 chr9 72735610 72735787 -51340385 - B4A SINE B4 -2 290 99 6 1139 405 232 12 0 chr9 72735791 72735873 -51340299 + B4A SINE B4 15 97 -195 6 1139 1609 37 0 0 chr9 72736709 72736897 -51339275 + B2_Mm1t SINE B2 2 189 -4 6 1139 503 176 24 0 chr9 72737027 72737112 -51339060 - B1_Mur2 SINE Alu -4 145 59 6 1139 1463 60 22 0 chr9 72737247 72737431 -51338741 + B2_Mm2 SINE B2 1 188 -7 6 1139 21 0 0 0 chr9 72737464 72737485 -51338687 + AT_rich Low_complexity Low_complexity 1 21 0 6 1139 188 88 59 0 chr9 72737600 72737634 -51338538 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 6 1139 265 274 135 10 chr9 72737996 72738092 -51338080 + B1F SINE Alu 40 147 -2 6 1139 345 47 0 0 chr9 72738183 72738226 -51337946 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1139 758 179 64 0 chr9 72739103 72739243 -51336929 - B1_Mur2 SINE Alu 0 149 1 6 1139 749 209 7 0 chr9 72739250 72739398 -51336774 - B1_Mur2 SINE Alu 0 149 1 6 1139 654 92 27 18 chr9 72740234 72740345 -51335827 - B2_Mm2 SINE B2 -1 194 83 6 1139 740 42 0 10 chr9 72740542 72740639 -51335533 + (CCCCAG)n Simple_repeat Simple_repeat 2 97 0 6 1139 186 289 18 80 chr9 72741185 72741298 -51334874 - L3 LINE CR1 -3383 1106 1001 6 1139 618 273 24 42 chr9 72741331 72741499 -51334673 + ID_B1 SINE B4 3 167 -57 6 1139 227 329 60 24 chr9 72742486 72742570 -51333602 + B4A SINE B4 89 175 -117 6 1139 32 26 0 0 chr9 72742607 72742646 -51333526 + AT_rich Low_complexity Low_complexity 1 39 0 6 1139 516 99 0 0 chr9 72742648 72742719 -51333453 - B1_Mus2 SINE Alu -1 146 76 6 1139 782 168 89 13 chr9 72742716 72742873 -51333299 - B3 SINE B2 -45 171 3 6 1139 702 274 37 5 chr9 72743027 72743218 -51332954 - B3A SINE B2 0 198 2 6 1139 4429 14 2 12 chr9 72743659 72744157 -51332015 - MT2_Mm LTR ERVL 0 493 1 7 1139 319 0 0 0 chr9 72744157 72744195 -51331977 - MERVL-int LTR ERVL 0 5485 5448 7 1139 403 167 46 35 chr9 72744195 72744282 -51331890 - ORR1A3-int LTR MaLR -1323 640 553 7 142 32272 19 0 0 chr9 72744282 72747830 -51328342 - MERVL-int LTR ERVL -125 5360 1812 7 1140 2921 24 9 0 chr9 72747811 72748147 -51328025 - MERVL-int LTR ERVL -5146 339 1 7 1140 4429 14 2 12 chr9 72748147 72748645 -51327527 - MT2_Mm LTR ERVL 0 493 1 7 1140 323 23 0 22 chr9 72748821 72748866 -51327306 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1140 569 110 43 21 chr9 72748920 72749013 -51327159 - B1_Mur3 SINE Alu -1 148 54 7 1140 375 237 144 0 chr9 72749121 72749239 -51326933 + RSINE1 SINE B4 3 137 -28 7 1140 255 61 0 0 chr9 72749272 72749305 -51326867 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1140 633 298 31 25 chr9 72749369 72749565 -51326607 + ID_B1 SINE B4 2 198 -26 7 1140 572 180 60 0 chr9 72749555 72749655 -51326517 - B3 SINE B2 -109 107 2 7 1140 518 229 23 69 chr9 72750498 72750629 -51325543 - RSINE1 SINE B4 -37 128 4 7 1140 477 288 25 25 chr9 72750657 72750814 -51325358 + RSINE1 SINE B4 3 159 -6 7 1140 581 259 28 28 chr9 72750901 72751080 -51325092 - B3A SINE B2 -18 180 2 7 1140 1314 51 28 33 chr9 72751273 72751431 -51324741 + B2_Mm1a SINE B2 2 160 -33 7 1140 180 0 0 0 chr9 72751431 72751451 -51324721 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 7 1140 1314 51 28 33 chr9 72751451 72751474 -51324698 + B2_Mm1a SINE B2 161 182 -11 7 1140 695 209 48 97 chr9 72751623 72751830 -51324342 + B3A SINE B2 2 198 0 7 1140 465 202 84 74 chr9 72752209 72752392 -51323780 - B3 SINE B2 -9 186 1 7 1140 407 242 250 45 chr9 72753372 72753415 -51322757 + B3A SINE B2 1 42 -156 7 1140 1539 53 5 0 chr9 72753415 72753602 -51322570 + B2_Mm1a SINE B2 3 190 -3 7 1140 407 242 250 45 chr9 72753602 72753714 -51322458 + B3A SINE B2 43 188 -10 7 1140 745 276 58 14 chr9 72754105 72754381 -51321791 + B4A SINE B4 1 288 -4 7 1140 420 37 0 0 chr9 72754396 72754450 -51321722 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1140 617 310 6 6 chr9 72755029 72755185 -51320987 + ID_B1 SINE B4 2 157 -67 7 1140 465 260 48 0 chr9 72755217 72755321 -51320851 + RSINE1 SINE B4 57 165 0 7 1140 299 203 81 0 chr9 72755362 72755436 -51320736 + ID_B1 SINE B4 145 224 0 7 1140 1129 207 0 0 chr9 72756033 72756236 -51319936 - B3 SINE B2 -13 203 1 7 1140 596 209 175 6 chr9 72756270 72756453 -51319719 + B3 SINE B2 2 215 -1 7 1140 649 323 0 6 chr9 72756881 72757040 -51319132 - RSINE1 SINE B4 -5 160 3 7 1140 209 171 0 0 chr9 72757166 72757201 -51318971 + C-rich Low_complexity Low_complexity 2 36 0 7 1140 351 152 0 0 chr9 72757201 72757280 -51318892 + CT-rich Low_complexity Low_complexity 1 79 0 7 1140 684 259 27 27 chr9 72757295 72757478 -51318694 - ID_B1 SINE B4 -40 184 2 7 1140 318 280 9 18 chr9 72757926 72758035 -51318137 + PB1D10 SINE Alu 1 108 -9 7 1140 212 77 0 25 chr9 72758035 72758075 -51318097 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 7 1140 605 224 158 37 chr9 72758080 72758270 -51317902 - B3 SINE B2 -3 213 1 7 1140 252 0 0 0 chr9 72758807 72758835 -51317337 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7 1140 821 40 0 0 chr9 72758837 72758937 -51317235 - B1_Mus2 SINE Alu -6 141 42 7 1140 315 176 78 39 chr9 72758874 72758951 -51317221 - RLTR25B LTR ERVK -519 509 430 7 1140 282 20 39 39 chr9 72758992 72759044 -51317128 + (GTTTG)n Simple_repeat Simple_repeat 2 53 0 7 1140 553 196 19 9 chr9 72759044 72759152 -51317020 - PB1D9 SINE Alu -11 109 1 7 1140 250 245 142 142 chr9 72759154 72759169 -51317003 - B2_Mm2 SINE B2 -4 191 177 7 1140 231 36 0 0 chr9 72759169 72759197 -51316975 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1140 464 230 164 43 chr9 72759197 72759371 -51316801 - B3A SINE B2 -19 176 2 7 1140 692 238 0 0 chr9 72759487 72759630 -51316542 - B1_Mus1 SINE Alu 0 148 6 7 1140 321 319 97 69 chr9 72759492 72759667 -51316505 - B4 SINE B4 -71 221 42 7 1140 22 0 0 0 chr9 72760562 72760584 -51315588 + AT_rich Low_complexity Low_complexity 1 22 0 7 1140 195 129 0 0 chr9 72761705 72761736 -51314436 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1140 279 0 0 0 chr9 72763984 72764015 -51312157 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1140 246 231 62 52 chr9 72764206 72764302 -51311870 - MLT1E3 LTR MaLR 0 624 528 7 1140 388 265 0 38 chr9 72764304 72764410 -51311762 - B1F2 SINE Alu -5 144 43 7 1140 265 233 0 62 chr9 72764358 72764422 -51311750 - 4.5SRNA scRNA scRNA -5 89 30 7 1140 406 251 24 47 chr9 72765156 72765173 -51310999 + ID_B1 SINE B4 80 221 -71 7 1140 734 121 26 0 chr9 72765173 72765289 -51310883 + B1_Mus1 SINE Alu 12 130 -18 7 1140 216 67 0 0 chr9 72765289 72765319 -51310853 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1140 315 304 82 63 chr9 72765319 72765357 -51310815 + B4A SINE B4 222 258 -34 7 1140 274 213 163 35 chr9 72765357 72765498 -51310674 + RSINE1 SINE B4 2 160 -5 7 1140 315 304 82 63 chr9 72765498 72765532 -51310640 + B4A SINE B4 259 290 -2 7 1140 1389 73 6 6 chr9 72765600 72765780 -51310392 + B2_Mm1a SINE B2 2 181 -12 7 1140 329 62 21 0 chr9 72765780 72765828 -51310344 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 1140 787 203 79 25 chr9 72765928 72766130 -51310042 - B3 SINE B2 -2 214 2 7 1140 324 0 0 0 chr9 72766145 72766181 -51309991 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1140 424 250 11 11 chr9 72766182 72766275 -51309897 - B3A SINE B2 -104 94 2 7 1140 322 303 249 0 chr9 72766315 72766480 -51309692 + L1MD LINE L1 2745 2950 -3196 7 1140 772 196 56 0 chr9 72766593 72766736 -51309436 + RSINE1 SINE B4 11 161 -4 7 1140 219 319 183 24 chr9 72766736 72766756 -51309416 + B3A SINE B2 10 198 0 7 1140 1129 69 7 27 chr9 72766775 72766924 -51309248 + B1_Mus1 SINE Alu 2 147 -1 7 1140 1182 112 0 0 chr9 72766925 72767103 -51309069 + (GAA)n Simple_repeat Simple_repeat 1 178 0 7 1140 4079 155 103 70 chr9 72767188 72768061 -51308111 - RMER19B LTR ERVK 0 902 1 7 1140 593 205 67 17 chr9 72768061 72768180 -51307992 + ID_B1 SINE B4 86 210 -14 7 1140 2838 65 0 31 chr9 72768480 72768864 -51307308 + L1Md_F2 LINE L1 6199 6570 -12 7 1140 1184 229 98 6 chr9 72769625 72769942 -51306230 - MTEb LTR MaLR -1 378 33 7 1140 417 345 94 65 chr9 72770263 72770645 -51305527 + MLT1H LTR MaLR 118 533 -16 7 1140 211 171 73 0 chr9 72770736 72770777 -51305395 + L2 LINE L2 2435 2478 -941 7 1140 493 251 90 30 chr9 72771077 72771278 -51304894 - MTE2b LTR MaLR -7 372 160 7 1140 1139 95 0 0 chr9 72771282 72771429 -51304743 - B1_Mus1 SINE Alu -1 147 1 7 1140 620 186 0 95 chr9 72771431 72771577 -51304595 - B1_Mur1 SINE Alu -7 142 3 7 1140 548 346 43 10 chr9 72771577 72771598 -51304574 - B4A SINE B4 -35 257 237 7 1140 736 261 80 10 chr9 72771598 72771799 -51304373 - B3 SINE B2 -1 215 1 7 1140 548 346 43 10 chr9 72771799 72771984 -51304188 - B4A SINE B4 -56 236 44 7 1140 553 208 0 47 chr9 72772010 72772116 -51304056 - PB1D9 SINE Alu -11 109 9 7 1140 37 99 0 0 chr9 72773372 72773493 -51302679 + GC_rich Low_complexity Low_complexity 1 121 0 7 1140 377 364 112 34 chr9 72774370 72774754 -51301418 - L2b LINE L2 -1 3374 2961 7 1140 542 216 104 7 chr9 72774826 72774961 -51301211 + B1_Mur1 SINE Alu 2 149 0 7 1140 688 117 62 9 chr9 72774978 72775090 -51301082 + PB1D9 SINE Alu 2 119 -1 7 1140 237 65 0 0 chr9 72775094 72775125 -51301047 + (GGA)n Simple_repeat Simple_repeat 3 33 0 7 1140 301 258 178 8 chr9 72775142 72775271 -51300901 - L2b LINE L2 -531 2888 2738 7 1140 487 300 99 12 chr9 72775467 72775720 -51300452 + B4A SINE B4 5 279 -13 7 1140 756 185 13 20 chr9 72775851 72776000 -51300172 - B1_Mur2 SINE Alu -1 148 1 7 1140 225 0 0 0 chr9 72776495 72776520 -51299652 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1140 858 128 0 43 chr9 72776522 72776661 -51299511 - B1_Mur4 SINE Alu -7 143 11 7 1140 295 282 27 18 chr9 72776677 72776789 -51299383 - PB1D10 SINE Alu 0 117 5 7 1140 258 56 0 0 chr9 72776851 72776887 -51299285 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 7 1140 284 200 0 14 chr9 72777086 72777157 -51299015 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1140 602 220 56 97 chr9 72777189 72777385 -51298787 - B3A SINE B2 -6 192 5 7 1140 683 201 82 0 chr9 72777416 72777550 -51298622 + B1_Mur4 SINE Alu 1 145 -5 7 1140 629 249 24 72 chr9 72777558 72777766 -51298406 + B3A SINE B2 1 198 0 7 1140 394 348 7 15 chr9 72777781 72777918 -51298254 + RSINE1 SINE B4 9 144 -21 7 1140 297 75 0 0 chr9 72777937 72777977 -51298195 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 7 1140 763 168 0 8 chr9 72778069 72778201 -51297971 + B1_Mur2 SINE Alu 18 148 -1 7 1140 1119 186 28 9 chr9 72778247 72778459 -51297713 + B3 SINE B2 1 216 0 7 1140 503 179 176 16 chr9 72778546 72778671 -51297501 + B1_Mur2 SINE Alu 1 145 -4 7 1140 269 244 65 22 chr9 72778677 72778769 -51297403 + ID_B1 SINE B4 129 224 0 7 1140 2503 64 6 9 chr9 72779501 72779831 -51296341 + L1_Mus3 LINE L1 6310 6638 0 7 1140 943 75 8 0 chr9 72779850 72779983 -51296189 + B1_Mur4 SINE Alu 11 144 -6 7 1140 621 243 101 0 chr9 72779994 72780163 -51296009 - B3 SINE B2 -12 204 19 7 1140 345 47 0 0 chr9 72780172 72780215 -51295957 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1140 888 181 0 0 chr9 72780249 72780393 -51295779 - B1_Mur4 SINE Alu -2 148 5 7 1140 525 244 73 8 chr9 72780400 72780524 -51295648 - B1_Mur1 SINE Alu -17 132 1 7 1140 521 214 16 56 chr9 72780524 72780663 -51295509 - B1_Mur1 SINE Alu -14 135 3 7 1140 279 0 0 0 chr9 72780750 72780781 -51295391 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1140 290 294 100 31 chr9 72780996 72781126 -51295046 - MTE2a LTR MaLR -39 340 202 8 1140 1323 62 96 0 chr9 72781175 72781352 -51294820 + B2_Mm2 SINE B2 1 194 -1 8 1140 333 203 0 42 chr9 72781420 72781492 -51294680 + PB1D10 SINE Alu 1 69 -48 8 1140 228 289 34 57 chr9 72781492 72781507 -51294665 + B4A SINE B4 86 170 -122 8 1140 243 0 0 0 chr9 72781514 72781541 -51294631 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 1140 905 151 58 0 chr9 72781595 72781734 -51294438 - B1_Mur3 SINE Alu 0 149 3 8 1140 22 56 0 0 chr9 72781866 72781902 -51294270 + AT_rich Low_complexity Low_complexity 1 36 0 8 1140 311 290 14 0 chr9 72781987 72782056 -51294116 + ID4 SINE ID 5 74 -9 8 1140 787 197 208 0 chr9 72782159 72782337 -51293835 - B3 SINE B2 0 216 2 8 1140 731 146 10 154 chr9 72782401 72782596 -51293576 + URR1B DNA MER1_type 57 223 -2 8 1140 264 257 14 168 chr9 72782596 72782621 -51293551 - CYRA11_Mm Unknown Y-chromosome -278 339 154 8 1140 995 248 9 5 chr9 72782627 72782846 -51293326 + ID_B1 SINE B4 2 221 -3 8 1140 1175 43 0 0 chr9 72782849 72782990 -51293182 + B1_Mm SINE Alu 1 141 -6 8 1140 263 49 24 0 chr9 72782992 72783033 -51293139 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 8 1140 236 239 0 0 chr9 72783034 72783080 -51293092 + GA-rich Low_complexity Low_complexity 4 49 0 8 1140 928 201 35 15 chr9 72783188 72783385 -51292787 + B3 SINE B2 1 201 -15 8 1140 23 0 0 0 chr9 72783385 72783408 -51292764 + AT_rich Low_complexity Low_complexity 1 23 0 8 1140 1479 73 0 20 chr9 72783419 72783616 -51292556 + B2_Mm2 SINE B2 2 194 -1 8 1140 651 231 164 41 chr9 72784277 72784521 -51291651 - RMER21B LTR ERV1 -271 571 298 8 1140 480 99 86 0 chr9 72784600 72784681 -51291491 - RLTR11B LTR ERVK 0 453 366 8 1140 443 188 0 94 chr9 72784687 72784793 -51291379 - MYSERV-int LTR ERVK -1753 573 478 8 1140 1888 291 68 35 chr9 72784805 72785701 -51290471 - MYSERV-int LTR ERVK -1929 4621 3774 8 1140 473 173 0 0 chr9 72786281 72786356 -51289816 + tRNA-Lys-AAG tRNA tRNA 2 76 0 8 1140 2814 137 4 24 chr9 72786360 72786818 -51289354 - RLTR11B LTR ERVK -4 449 1 8 1140 333 260 41 10 chr9 72786819 72786916 -51289256 - RMER4B LTR ERVK -141 444 345 8 1140 4950 200 60 18 chr9 72786917 72787934 -51288238 - RodERV21-int LTR ERV1 -166 4825 3766 8 1140 418 65 16 0 chr9 72788441 72788503 -51287669 + B1_Mus2 SINE Alu 85 147 0 8 1140 379 161 169 22 chr9 72788539 72788628 -51287544 - PB1D7 SINE Alu -1 119 18 8 1140 262 192 67 26 chr9 72788653 72788762 -51287410 - L1_Rod LINE L1 -2196 3950 3841 8 1140 207 0 0 0 chr9 72788762 72788785 -51287387 + (TCTA)n Simple_repeat Simple_repeat 2 24 0 8 1140 293 24 49 0 chr9 72788785 72788825 -51287347 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 8 1140 773 115 67 30 chr9 72788825 72788959 -51287213 - B1_Mur4 SINE Alu -11 139 1 8 1140 369 0 0 0 chr9 72789013 72789054 -51287118 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 8 1140 537 16 0 0 chr9 72789055 72789117 -51287055 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 8 1140 252 204 19 0 chr9 72789289 72789343 -51286829 + ORR1E LTR MaLR 31 85 -274 8 1140 483 279 31 0 chr9 72789600 72789729 -51286443 + RSINE1 SINE B4 5 137 -28 8 1140 537 88 0 0 chr9 72789730 72789810 -51286362 + (CA)n Simple_repeat Simple_repeat 1 80 0 8 1140 717 143 0 0 chr9 72790043 72790155 -51286017 - B2_Mm2 SINE B2 -83 112 1 8 1140 1101 58 15 0 chr9 72790271 72790408 -51285764 + B1_Mus2 SINE Alu 1 139 -8 8 1140 528 157 87 19 chr9 72790918 72791022 -51285150 - B3A SINE B2 -79 119 9 8 1140 819 199 88 5 chr9 72791348 72791540 -51284632 - B3 SINE B2 -6 210 3 8 1140 936 230 29 0 chr9 72791894 72792103 -51284069 - B3 SINE B2 0 216 2 8 1140 578 233 74 0 chr9 72792201 72792377 -51283795 - B3A SINE B2 -8 190 2 8 1140 775 270 14 9 chr9 72794882 72795095 -51281077 + B3 SINE B2 1 214 -2 8 1140 929 197 85 10 chr9 72795256 72795456 -51280716 + B3 SINE B2 2 216 0 8 1140 23 0 0 0 chr9 72795799 72795822 -51280350 + AT_rich Low_complexity Low_complexity 1 23 0 8 1140 484 236 50 35 chr9 72796156 72796338 -51279834 - B3A SINE B2 -9 186 3 8 1140 829 83 15 0 chr9 72796695 72796827 -51279345 + B1_Mus2 SINE Alu 14 147 0 8 1140 928 86 14 0 chr9 72796913 72797053 -51279119 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 8 1140 411 216 138 0 chr9 72797506 72797622 -51278550 + B3 SINE B2 4 135 -81 8 1140 542 138 0 0 chr9 72797651 72797738 -51278434 - B3 SINE B2 -124 92 6 8 1140 935 235 14 27 chr9 72798760 72798979 -51277193 + ID_B1 SINE B4 2 217 -7 8 1140 21 0 0 0 chr9 72799662 72799683 -51276489 + AT_rich Low_complexity Low_complexity 1 21 0 8 1140 286 270 34 0 chr9 72800169 72800258 -51275914 + PB1D10 SINE Alu 26 117 0 8 1140 585 314 41 0 chr9 72800604 72800773 -51275399 + B3A SINE B2 1 176 -22 8 1140 432 0 0 0 chr9 72800787 72800835 -51275337 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1140 558 252 21 14 chr9 72801403 72801548 -51274624 + B1F2 SINE Alu 2 147 -2 8 1140 262 0 53 0 chr9 72801859 72801897 -51274275 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 8 1140 1096 22 73 0 chr9 72801905 72802042 -51274130 - B1_Mm SINE Alu 0 147 1 8 1140 236 159 0 0 chr9 72802531 72802575 -51273597 + U1 snRNA snRNA 1 44 -121 8 1140 920 149 106 20 chr9 72802624 72802823 -51273349 + B3 SINE B2 1 216 0 8 1140 505 180 0 11 chr9 72802844 72802934 -51273238 + B1_Mur3 SINE Alu 5 93 -56 8 1140 269 237 37 110 chr9 72802934 72802946 -51273226 + MT2B LTR ERVL 190 259 -342 8 1140 240 262 95 0 chr9 72803074 72803102 -51273070 + ID_B1 SINE B4 126 191 -33 8 1140 271 213 0 0 chr9 72803102 72803149 -51273023 + B1F SINE Alu 79 125 -24 8 1140 496 184 0 0 chr9 72803228 72803315 -51272857 - RSINE1 SINE B4 -38 127 41 8 1140 862 206 85 10 chr9 72803471 72803672 -51272500 - B3 SINE B2 0 216 1 8 1140 330 185 40 65 chr9 72803702 72803809 -51272363 - Lx5 LINE L1 -31 7019 6928 8 1140 577 176 0 102 chr9 72803907 72804034 -51272138 + PB1D9 SINE Alu 1 114 -6 8 1140 902 147 0 0 chr9 72804399 72804542 -51271630 - B1_Mus1 SINE Alu 0 148 6 8 1140 1048 226 9 14 chr9 72804558 72804778 -51271394 - ID_B1 SINE B4 -4 220 2 8 1140 895 144 7 20 chr9 72804806 72804955 -51271217 - B1_Mus1 SINE Alu -1 147 1 8 1140 1559 47 5 15 chr9 72804958 72805153 -51271019 - B2_Mm1t SINE B2 0 193 1 8 1140 279 114 0 0 chr9 72805169 72805213 -51270959 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1140 434 218 120 0 chr9 72806252 72806394 -51269778 - B3A SINE B2 -2 196 38 8 1140 277 227 167 0 chr9 72806927 72806993 -51269179 - ID4 SINE ID -2 81 5 8 1140 757 169 201 6 chr9 72806997 72807176 -51268996 - B3 SINE B2 -2 214 1 8 1140 321 233 128 0 chr9 72807209 72807295 -51268877 - PB1D10 SINE Alu -20 97 1 8 1140 379 246 130 27 chr9 72807329 72807475 -51268697 + RSINE1 SINE B4 5 165 0 8 1140 1232 47 0 0 chr9 72807494 72807642 -51268530 + B1_Mus1 SINE Alu 1 148 0 8 1140 224 127 27 53 chr9 72807642 72807657 -51268515 + A-rich Low_complexity Low_complexity 9 23 0 8 1140 204 67 0 0 chr9 72807657 72807687 -51268485 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 8 1140 224 127 27 53 chr9 72807687 72807737 -51268435 + A-rich Low_complexity Low_complexity 24 73 0 8 1140 198 0 0 0 chr9 72807865 72807887 -51268285 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1140 902 226 24 0 chr9 72808094 72808302 -51267870 - B3 SINE B2 0 216 4 8 1140 225 0 0 0 chr9 72808353 72808378 -51267794 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1140 227 67 0 0 chr9 72808621 72808651 -51267521 + ID_B1 SINE B4 189 218 -6 8 1140 285 286 40 104 chr9 72808672 72808779 -51267393 + PB1D10 SINE Alu 8 105 -12 8 1140 1155 75 7 0 chr9 72808869 72809015 -51267157 + B1_Mus1 SINE Alu 2 148 0 8 1140 699 228 10 63 chr9 72810373 72810579 -51265593 - ID_B1 SINE B4 -21 203 9 8 1140 282 167 0 0 chr9 72810580 72810640 -51265532 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1140 982 166 193 0 chr9 72810751 72810932 -51265240 - B3 SINE B2 0 216 1 8 1140 665 171 27 67 chr9 72811485 72811635 -51264537 - B1_Mur1 SINE Alu -5 144 1 8 1140 223 214 47 12 chr9 72811698 72811783 -51264389 + T-rich Low_complexity Low_complexity 4 91 0 8 1140 239 204 37 0 chr9 72812142 72812196 -51263976 + B1_Mur4 SINE Alu 94 149 -1 8 1140 252 214 0 0 chr9 72812202 72812258 -51263914 + A-rich Low_complexity Low_complexity 2 57 0 8 1140 224 191 16 16 chr9 72812282 72812346 -51263826 + T-rich Low_complexity Low_complexity 3 66 0 8 1140 1308 197 60 16 chr9 72812354 72812742 -51263430 - RMER19C LTR ERVK -5 606 179 8 1140 531 283 43 12 chr9 72812751 72812912 -51263260 - MTE2b LTR MaLR -213 166 1 8 1140 399 183 10 41 chr9 72813194 72813291 -51262881 + MTD LTR MaLR 1 94 -325 8 1140 295 274 0 0 chr9 72813278 72813351 -51262821 + B1F SINE Alu 72 144 -5 8 1140 272 300 25 0 chr9 72813487 72813567 -51262605 + ID4_ SINE ID 2 83 0 9 1140 219 217 0 91 chr9 72813578 72813644 -51262528 + B1_Mur1 SINE Alu 63 122 -27 9 1140 573 157 54 101 chr9 72813907 72814056 -51262116 + B4 SINE B4 86 227 -65 9 1140 436 162 42 8 chr9 72814058 72814153 -51262019 + B1_Mur1 SINE Alu 2 138 -11 9 1140 660 26 0 0 chr9 72814153 72814231 -51261941 + (CAAG)n Simple_repeat Simple_repeat 2 79 0 9 1140 1204 74 0 0 chr9 72814413 72814561 -51261611 + B1_Mus1 SINE Alu 1 148 0 9 1140 231 114 0 0 chr9 72814561 72814596 -51261576 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1140 204 118 29 0 chr9 72814830 72814864 -51261308 + (CACCC)n Simple_repeat Simple_repeat 2 36 0 9 1140 708 197 0 14 chr9 72815321 72815334 -51260838 - B1F1 SINE Alu -1 148 137 9 1140 239 0 32 0 chr9 72815334 72815365 -51260807 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 1140 708 197 0 14 chr9 72815365 72815495 -51260677 - B1F1 SINE Alu -13 136 7 9 1140 614 120 27 36 chr9 72815534 72815646 -51260526 - B1_Mur3 SINE Alu 0 149 39 9 1140 252 51 0 114 chr9 72815646 72815734 -51260438 + CT-rich Low_complexity Low_complexity 4 81 0 9 1140 296 224 52 13 chr9 72815973 72816050 -51260122 - ID4 SINE ID -2 81 2 9 1140 435 296 22 7 chr9 72816157 72816293 -51259879 - B1F SINE Alu -5 144 7 9 1140 417 264 52 33 chr9 72816293 72816306 -51259866 - ID_B1 SINE B4 -1 219 68 9 1140 884 124 267 0 chr9 72817066 72817227 -51258945 + B3 SINE B2 1 204 -12 9 1140 348 111 0 0 chr9 72817238 72817292 -51258880 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 1140 646 187 0 0 chr9 72817408 72817515 -51258657 + U6 snRNA snRNA 1 107 0 9 1140 180 0 0 0 chr9 72818173 72818193 -51257979 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 9 1140 1286 81 6 0 chr9 72818194 72818366 -51257806 - B2_Mm1a SINE B2 -18 175 3 9 1140 241 286 38 75 chr9 72818542 72818648 -51257524 - PB1 SINE Alu -25 102 1 9 1140 484 225 139 0 chr9 72818675 72818804 -51257368 - ID_B1 SINE B4 0 224 78 9 1140 1671 26 0 20 chr9 72818964 72819161 -51257011 - B2_Mm1a SINE B2 0 193 1 9 1140 780 236 5 55 chr9 72819182 72819384 -51256788 - B3A SINE B2 -6 192 1 9 1140 895 212 22 104 chr9 72819486 72819754 -51256418 - B4A SINE B4 -46 246 1 9 1140 382 214 58 58 chr9 72819911 72820015 -51256157 + ID_B1 SINE B4 14 117 -107 9 1140 407 198 0 5 chr9 72820366 72820445 -51255727 + PB1D9 SINE Alu 17 92 -28 9 1140 23 33 0 0 chr9 72820594 72820624 -51255548 + AT_rich Low_complexity Low_complexity 1 30 0 9 1140 305 170 40 0 chr9 72820761 72820843 -51255329 + B1F SINE Alu 28 144 -5 9 1140 1078 182 33 14 chr9 72820910 72821122 -51255050 - B3 SINE B2 0 216 1 9 1140 320 283 50 66 chr9 72821166 72821287 -51254885 + PB1D9 SINE Alu 1 119 -1 9 1140 581 281 27 0 chr9 72821287 72821433 -51254739 + B3A SINE B2 2 151 -47 9 1140 293 281 10 10 chr9 72822103 72822200 -51253972 - PB1D7 SINE Alu 0 120 24 9 1140 927 128 13 20 chr9 72822212 72822363 -51253809 + B1_Mur4 SINE Alu 1 150 0 9 1140 507 250 24 0 chr9 72822488 72822612 -51253560 - B1F SINE Alu -22 127 1 9 1140 550 223 65 0 chr9 72822631 72822770 -51253402 - B1F1 SINE Alu -1 148 1 9 1140 1366 113 0 14 chr9 72822854 72823069 -51253103 + MT2B2 LTR ERVL 373 584 0 9 1140 934 233 127 10 chr9 72823080 72823388 -51252784 - RMER5 LTR ERV1 -112 422 79 9 1140 341 303 18 0 chr9 72823443 72823552 -51252620 - PB1D10 SINE Alu -6 111 1 9 1140 237 298 51 26 chr9 72823630 72823747 -51252425 - PB1D7 SINE Alu 0 120 1 9 1140 296 203 85 138 chr9 72823764 72823946 -51252226 - B3A SINE B2 0 216 26 9 1140 2283 63 3 6 chr9 72823946 72824265 -51251907 + RLTR10 LTR ERVK 1 318 -72 9 1140 280 22 0 0 chr9 72824291 72824336 -51251836 + RLTR10 LTR ERVK 261 305 -85 9 1140 891 120 38 0 chr9 72824341 72824499 -51251673 + RLTR10 LTR ERVK 227 390 0 9 1140 8428 43 2 5 chr9 72824500 72825506 -51250666 + RLTR10-int LTR ERVK 9 988 -999 9 1140 8948 15 5 0 chr9 72825585 72826575 -51249597 + RLTR10-int LTR ERVK 990 1984 -3 9 1140 2283 63 3 6 chr9 72826577 72826896 -51249276 + RLTR10 LTR ERVK 1 318 -72 9 1140 280 22 0 0 chr9 72826922 72826967 -51249205 + RLTR10 LTR ERVK 261 305 -85 9 1140 891 120 38 0 chr9 72826972 72827130 -51249042 + RLTR10 LTR ERVK 227 390 0 9 1140 262 216 25 75 chr9 72827201 72827281 -51248891 + B1F SINE Alu 73 148 -1 9 1140 1258 34 0 0 chr9 72827345 72827492 -51248680 + B1_Mus2 SINE Alu 1 147 0 9 1140 222 62 0 0 chr9 72827495 72827527 -51248645 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1140 560 180 171 8 chr9 72828101 72828224 -51247948 - B1_Mur1 SINE Alu -6 143 1 9 1140 427 285 15 15 chr9 72828234 72828366 -51247806 - ID_B1 SINE B4 -6 218 87 9 1140 1177 41 0 27 chr9 72828524 72828674 -51247498 - B1_Mm SINE Alu 0 147 2 9 1140 457 274 0 33 chr9 72828863 72828984 -51247188 - PB1D7 SINE Alu -3 117 1 9 1140 434 258 35 64 chr9 72829174 72829315 -51246857 + B1F2 SINE Alu 12 148 -1 9 1140 270 202 298 0 chr9 72829335 72829419 -51246753 + ID_B1 SINE B4 116 224 0 9 1140 214 259 19 0 chr9 72829882 72829936 -51246236 + CT-rich Low_complexity Low_complexity 2 56 0 9 1140 589 227 200 0 chr9 72830267 72830452 -51245720 + ID_B1 SINE B4 3 224 0 9 1140 401 233 110 89 chr9 72830512 72830658 -51245514 + B4 SINE B4 72 220 -72 9 1140 944 78 0 0 chr9 72830535 72830664 -51245508 + B1_Mus1 SINE Alu 20 148 0 9 1140 883 130 0 17 chr9 72830666 72830846 -51245326 + (GAA)n Simple_repeat Simple_repeat 2 178 0 9 1140 753 177 73 22 chr9 72830950 72831129 -51245043 - B2_Mm2 SINE B2 0 195 8 9 1140 264 197 98 0 chr9 72831144 72831205 -51244967 - B1F SINE Alu -71 78 12 9 1140 237 33 0 0 chr9 72831227 72831257 -51244915 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 9 1140 426 198 53 53 chr9 72831321 72831492 -51244680 + RMER17C LTR ERVK 106 276 -134 9 1140 252 0 0 0 chr9 72831492 72831520 -51244652 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 9 1140 3824 52 19 8 chr9 72831533 72832003 -51244169 + MT2C_Mm LTR ERVL 1 475 0 9 1140 499 279 45 23 chr9 72832212 72832344 -51243828 + ID_B1 SINE B4 86 220 -4 9 1140 286 269 0 13 chr9 72832384 72832463 -51243709 + ID4_ SINE ID 1 78 -5 9 1140 377 205 0 13 chr9 72832660 72832739 -51243433 + ID4 SINE ID 2 79 -4 9 1140 636 189 9 0 chr9 72834225 72834336 -51241836 - B1_Mus2 SINE Alu 0 147 36 9 1140 237 324 78 0 chr9 72834281 72834383 -51241789 - MT2C_Mm LTR ERVL -264 211 102 9 1140 262 267 176 25 chr9 72834483 72834602 -51241570 - B1F1 SINE Alu 0 149 13 9 1140 321 281 0 0 chr9 72834761 72834825 -51241347 + ID4_ SINE ID 7 70 -13 9 1140 207 0 0 0 chr9 72834992 72835015 -51241157 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1140 312 189 147 13 chr9 72835158 72835233 -51240939 - ID_B1 SINE B4 -13 211 127 9 1140 437 280 39 16 chr9 72835273 72835400 -51240772 + RSINE1 SINE B4 3 132 -33 9 1140 236 322 89 0 chr9 72835476 72835566 -51240606 + B1_Mur3 SINE Alu 7 104 -45 9 1140 619 108 254 26 chr9 72835745 72835859 -51240313 + B1_Mus1 SINE Alu 1 140 -8 9 1140 249 119 0 0 chr9 72835867 72835909 -51240263 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1140 290 309 32 11 chr9 72836276 72836371 -51239801 + ID_B1 SINE B4 87 183 -41 9 1140 240 247 131 83 chr9 72836587 72836671 -51239501 - RSINE1 SINE B4 -40 125 38 9 1140 416 129 209 38 chr9 72836713 72836818 -51239354 - B1_Mur4 SINE Alu 0 150 28 9 1140 354 185 167 42 chr9 72836823 72836919 -51239253 - PB1D7 SINE Alu 0 120 13 9 1140 613 161 5 0 chr9 72837048 72837151 -51239021 - B3 SINE B2 -85 108 2 9 1140 378 0 0 0 chr9 72838689 72838731 -51237441 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 1140 358 298 141 30 chr9 72838934 72839069 -51237103 - B3A SINE B2 -48 150 1 9 1140 342 0 0 0 chr9 72839215 72839253 -51236919 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9 1140 504 50 350 0 chr9 72839253 72839370 -51236802 - B2_Mm1t SINE B2 -34 159 2 9 1140 1291 105 16 5 chr9 72839617 72839808 -51236364 - B2_Mm2 SINE B2 -2 193 1 9 1140 1150 56 14 0 chr9 72839837 72839979 -51236193 - B1_Mus1 SINE Alu -1 147 4 9 1140 442 329 35 7 chr9 72839998 72840139 -51236033 - ID_B1 SINE B4 0 224 80 9 1140 333 225 41 83 chr9 72840134 72840255 -51235917 - PB1D7 SINE Alu -4 116 1 9 1140 398 231 52 65 chr9 72840510 72840529 -51235643 + B1F SINE Alu 2 48 -101 9 1140 294 189 95 95 chr9 72840529 72840634 -51235538 + MT2B LTR ERVL 165 269 -332 9 1140 398 231 52 65 chr9 72840634 72840670 -51235502 + B1F SINE Alu 49 145 -4 9 1140 571 28 0 0 chr9 72840682 72840753 -51235419 + B1_Mur4 SINE Alu 80 150 0 9 1140 291 233 78 104 chr9 72840772 72840887 -51235285 - PB1D9 SINE Alu 0 120 9 9 1140 248 131 344 0 chr9 72840907 72840963 -51235209 - ORR1D1 LTR MaLR 0 384 308 9 1140 725 164 8 24 chr9 72840963 72841088 -51235084 + B3 SINE B2 2 124 -92 9 1140 326 282 37 88 chr9 72841043 72841179 -51234993 - ORR1D1 LTR MaLR -57 317 189 9 1140 200 59 29 0 chr9 72841295 72841329 -51234843 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1140 559 247 20 7 chr9 72841355 72841502 -51234670 + B1F SINE Alu 1 149 0 9 1140 314 250 0 50 chr9 72841505 72841585 -51234587 + ID4_ SINE ID 5 80 -3 9 1140 552 30 0 0 chr9 72841618 72841684 -51234488 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 1 1140 1150 82 0 0 chr9 72841967 72842114 -51234058 + B1_Mm SINE Alu 1 147 0 1 1140 461 266 0 0 chr9 72842188 72842297 -51233875 + PB1D10 SINE Alu 2 110 -7 1 1140 491 232 204 7 chr9 72842305 72842457 -51233715 + B4 SINE B4 1 182 -110 1 1140 772 149 7 22 chr9 72842469 72842606 -51233566 - B1_Mur2 SINE Alu -3 146 12 1 1140 285 305 75 19 chr9 72842784 72842891 -51233281 + B1F2 SINE Alu 26 138 -11 1 1140 944 215 39 15 chr9 72843053 72843256 -51232916 + B3 SINE B2 1 208 -8 1 1140 288 321 0 47 chr9 72843300 72843385 -51232787 - PB1 SINE Alu -29 98 18 1 1140 311 45 0 22 chr9 72843640 72843686 -51232486 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1140 1134 85 0 0 chr9 72843686 72843827 -51232345 - B1_Mus2 SINE Alu -4 143 3 1 1140 251 317 19 103 chr9 72844164 72844319 -51231853 - MT2B LTR ERVL -296 305 164 1 1140 771 234 128 15 chr9 72844185 72844380 -51231792 - ID_B1 SINE B4 -7 217 1 1 1140 1704 21 0 0 chr9 72844978 72845168 -51231004 + B2_Mm1a SINE B2 2 191 -2 1 1140 316 285 48 110 chr9 72845442 72845466 -51230706 - B1_Mur4 SINE Alu 0 150 133 1 1140 354 296 29 22 chr9 72845466 72845604 -51230568 - B1F2 SINE Alu -8 141 3 1 1140 316 285 48 110 chr9 72845604 72845616 -51230556 - B1_Mur4 SINE Alu -18 132 127 1 1140 250 227 83 83 chr9 72845616 72845736 -51230436 - PB1D9 SINE Alu 0 120 1 1 1140 500 238 19 28 chr9 72845736 72845844 -51230328 - PB1D7 SINE Alu -1 119 13 1 1140 333 272 50 42 chr9 72846181 72846300 -51229872 - B1F SINE Alu -16 133 14 1 1140 826 182 8 0 chr9 72846320 72846452 -51229720 - B3 SINE B2 -83 133 1 1 1140 4918 41 2 10 chr9 72847632 72848223 -51227949 - L1Md_F2 LINE L1 0 6582 5997 1 1140 502 299 41 66 chr9 72848360 72848557 -51227615 + B3A SINE B2 1 192 -6 1 1140 631 133 139 16 chr9 72848852 72848974 -51227198 - B1_Mur2 SINE Alu 0 149 13 1 1140 256 217 200 110 chr9 72848854 72848999 -51227173 - B4 SINE B4 -69 223 66 1 1140 251 259 24 12 chr9 72849285 72849367 -51226805 + ID4_ SINE ID 1 83 0 1 1140 288 284 0 0 chr9 72849864 72849931 -51226241 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1140 213 317 67 0 chr9 72849938 72849998 -51226174 - ID4_ SINE ID -11 72 9 1 1140 269 299 0 25 chr9 72850074 72850153 -51226019 - B1F1 SINE Alu -16 133 57 1 1140 759 200 14 14 chr9 72850189 72850331 -51225841 - B1_Mur4 SINE Alu -7 143 2 1 1140 343 305 123 15 chr9 72850687 72850817 -51225355 - B1F SINE Alu -1 148 5 1 1140 198 71 0 0 chr9 72851299 72851327 -51224845 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1140 617 242 30 0 chr9 72851332 72851464 -51224708 - B1F2 SINE Alu -9 140 5 1 1140 421 231 48 57 chr9 72853780 72853904 -51222268 + PB1 SINE Alu 5 127 0 1 1140 769 205 83 69 chr9 72854041 72854245 -51221927 + B3 SINE B2 1 207 -9 1 1140 792 151 5 53 chr9 72854344 72854533 -51221639 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1140 369 238 191 0 chr9 72854536 72854620 -51221552 - PB1D10 SINE Alu -7 110 11 1 1140 541 203 11 126 chr9 72854683 72854835 -51221337 - B1_Mur3 SINE Alu 0 149 2 1 1140 814 58 174 0 chr9 72856054 72856175 -51219997 + B2_Mm2 SINE B2 1 142 -53 1 1140 470 300 29 0 chr9 72856886 72857026 -51219146 + RSINE1 SINE B4 3 146 -19 1 1140 602 229 88 59 chr9 72857095 72857299 -51218873 + ID_B1 SINE B4 8 217 -7 1 1140 779 181 34 20 chr9 72857325 72857472 -51218700 + B1_Mur4 SINE Alu 2 150 0 1 1140 311 295 21 0 chr9 72857475 72857570 -51218602 + ID_B1 SINE B4 126 222 -2 1 1140 354 266 8 99 chr9 72858254 72858375 -51217797 + PB1D10 SINE Alu 6 115 -2 1 1140 234 309 9 93 chr9 72858507 72858614 -51217558 - Charlie8 DNA MER1_type -620 1808 1711 1 1140 571 275 8 8 chr9 72858523 72858655 -51217517 - RSINE1 SINE B4 -25 140 9 1 1140 204 125 0 0 chr9 72858673 72858705 -51217467 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1140 280 246 14 0 chr9 72858883 72858952 -51217220 - B1_Mur3 SINE Alu -79 70 1 1 1140 462 221 48 0 chr9 72859088 72859192 -51216980 + B1_Mus1 SINE Alu 40 148 0 1 1140 26 0 0 0 chr9 72861220 72861246 -51214926 + AT_rich Low_complexity Low_complexity 1 26 0 1 1140 258 105 0 0 chr9 72861322 72861360 -51214812 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1 1140 186 43 0 0 chr9 72861368 72861391 -51214781 + (CATA)n Simple_repeat Simple_repeat 4 26 0 1 1140 250 139 23 0 chr9 72861721 72861764 -51214408 - MARNA DNA Mariner -340 246 203 1 1140 333 212 0 105 chr9 72864317 72864334 -51211838 + MT2B LTR ERVL 153 237 -364 1 1140 501 128 0 0 chr9 72864334 72864412 -51211760 + B1_Mus1 SINE Alu 4 81 -67 1 1140 530 279 92 106 chr9 72864420 72864517 -51211655 + B4A SINE B4 2 88 -204 1 1140 429 174 147 39 chr9 72864517 72864619 -51211553 + PB1D9 SINE Alu 1 113 -7 1 1140 530 279 92 106 chr9 72864619 72864814 -51211358 + B4A SINE B4 89 290 -2 1 1140 379 169 14 0 chr9 72864894 72864965 -51211207 + MTEb LTR MaLR 105 176 -203 1 1140 388 304 26 51 chr9 72864976 72865132 -51211040 + MTEb LTR MaLR 228 379 0 1 1140 1236 54 24 24 chr9 72865412 72865582 -51210590 + B2_Mm2 SINE B2 2 171 -24 1 1140 358 214 244 11 chr9 72866498 72866588 -51209584 - PB1D10 SINE Alu 0 117 7 1 1140 731 55 227 9 chr9 72866901 72867011 -51209161 + B1_Mus1 SINE Alu 3 136 -12 1 1140 295 259 5 37 chr9 72867373 72867468 -51208704 + PB1D10 SINE Alu 9 103 -17 1 1140 293 323 37 75 chr9 72867520 72867654 -51208518 - B1F SINE Alu -17 132 4 1 1140 280 298 19 37 chr9 72867685 72867793 -51208379 - PB1D10 SINE Alu -10 107 2 1 1140 458 236 234 66 chr9 72868098 72868345 -51207827 + MLT1H LTR MaLR 68 347 -208 1 1140 278 228 31 61 chr9 72868463 72868561 -51207611 + PB1D10 SINE Alu 7 101 -16 1 1140 228 244 10 155 chr9 72868652 72868671 -51207501 + MT2B2 LTR ERVL 151 155 -429 1 1140 431 285 48 8 chr9 72868671 72868795 -51207377 + B1F SINE Alu 1 129 -20 1 1140 266 244 185 59 chr9 72868913 72868927 -51207245 - B4A SINE B4 -59 233 86 1 1140 411 232 26 43 chr9 72868927 72869044 -51207128 - PB1D10 SINE Alu -2 115 1 1 1140 1257 28 0 0 chr9 72869421 72869562 -51206610 + B1_Mm SINE Alu 1 141 -6 1 1140 297 0 0 0 chr9 72869564 72869597 -51206575 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1 1140 237 33 0 0 chr9 72869710 72869740 -51206432 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1140 345 322 0 80 chr9 72869749 72869911 -51206261 - RSINE1 SINE B4 -15 150 2 1 1140 638 93 205 33 chr9 72870474 72870596 -51205576 - B1_Mus1 SINE Alu -1 147 5 1 1140 239 265 125 86 chr9 72870737 72870865 -51205307 - B3A SINE B2 0 198 66 1 1140 1321 233 79 9 chr9 72871612 72871954 -51204218 + MTD LTR MaLR 52 417 -2 1 1140 728 166 34 61 chr9 72871974 72872122 -51204050 - B1_Mur2 SINE Alu 0 149 6 1 1140 578 269 22 60 chr9 72871979 72872161 -51204011 - ID_B1 SINE B4 0 224 50 1 1140 277 244 51 0 chr9 72872158 72872236 -51203936 - B3 SINE B2 -6 210 129 1 1140 2146 58 67 20 chr9 72872257 72872555 -51203617 + L1_Mus3 LINE L1 6322 6633 -5 1 1140 521 224 37 0 chr9 72872608 72872715 -51203457 - B3A SINE B2 -61 137 27 1 1140 1334 79 20 40 chr9 72873167 72873365 -51202807 - B2_Mm2 SINE B2 0 195 2 1 1140 338 142 3 81 chr9 72873424 72873498 -51202674 + B1_Mur1 SINE Alu 63 123 -26 1 1140 600 290 293 36 chr9 72873491 72873803 -51202369 + RLTR26 LTR ERVK 197 588 -54 1 1140 1356 48 6 0 chr9 72874755 72874922 -51201250 + B2_Mm2 SINE B2 2 169 -26 1 1140 27 62 0 15 chr9 72874926 72874956 -51201216 + AT_rich Low_complexity Low_complexity 1 30 0 1 1140 1129 69 14 0 chr9 72874956 72875101 -51201071 - B1_Mus1 SINE Alu 0 148 2 1 1140 27 62 0 15 chr9 72875101 72875136 -51201036 + AT_rich Low_complexity Low_complexity 1 35 0 1 1140 422 234 11 0 chr9 72875177 72875271 -51200901 + RMER17A-int LTR ERVK 990 1084 -644 1 1140 302 277 104 39 chr9 72875478 72875632 -51200540 + RMER17A-int LTR ERVK 1148 1311 -417 1 142 1941 141 98 84 chr9 72875775 72876192 -51199980 + RMER13A LTR ERVK 1 423 -437 1 1141 629 197 83 14 chr9 72876320 72876464 -51199708 + RMER13A LTR ERVK 665 818 -42 1 1141 401 250 205 24 chr9 72877126 72877253 -51198919 + RSINE1 SINE B4 3 152 -13 1 1141 895 266 78 19 chr9 72877835 72878142 -51198030 - RLTR41 LTR ERV1 0 446 122 1 1141 328 247 50 22 chr9 72878141 72878233 -51197939 + B1F1 SINE Alu 7 110 -10 1 1141 377 272 37 67 chr9 72878265 72878399 -51197773 - B1_Mm SINE Alu -13 134 5 1 1141 533 282 25 51 chr9 72878283 72878440 -51197732 - ID_B1 SINE B4 -23 201 49 1 1141 714 179 0 70 chr9 72878752 72878908 -51197264 + B1_Mur2 SINE Alu 5 149 0 1 1141 582 236 20 14 chr9 72879023 72879169 -51197003 - B1_Mus2 SINE Alu 0 147 1 1 1141 261 0 0 0 chr9 72880450 72880479 -51195693 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1141 25 31 0 0 chr9 72880479 72880511 -51195661 + AT_rich Low_complexity Low_complexity 1 32 0 1 1141 1272 34 0 0 chr9 72880511 72880658 -51195514 - B1_Mm SINE Alu 0 147 1 1 1141 625 242 26 35 chr9 72881295 72881483 -51194689 + B3A SINE B2 20 209 -7 1 1141 270 364 0 0 chr9 72881508 72881596 -51194576 - Tigger16a DNA Tigger -12 921 834 1 1141 276 278 79 93 chr9 72881686 72881825 -51194347 + MT2B LTR ERVL 121 257 -344 1 1141 365 273 78 97 chr9 72881710 72881864 -51194308 + B4 SINE B4 70 220 -72 1 1141 725 188 36 29 chr9 72881733 72881870 -51194302 + B1_Mur4 SINE Alu 13 150 0 1 1141 223 184 12 62 chr9 72881870 72881951 -51194221 + A-rich Low_complexity Low_complexity 6 82 0 1 1141 312 70 0 0 chr9 72882560 72882603 -51193569 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 1 1141 249 278 66 11 chr9 72882617 72882708 -51193464 - PB1D10 SINE Alu -17 100 5 1 1141 532 335 94 0 chr9 72882854 72883057 -51193115 - MIRb SINE MIR -30 238 17 1 1141 1342 90 16 0 chr9 72883063 72883251 -51192921 + B2_Mm1a SINE B2 2 192 -1 1 1141 554 273 61 22 chr9 72883269 72883449 -51192723 + B3A SINE B2 2 188 -10 1 1141 234 0 0 0 chr9 72883452 72883478 -51192694 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1141 479 306 96 68 chr9 72883998 72884278 -51191894 - B4A SINE B4 -4 288 1 1 1141 21 36 0 0 chr9 72884668 72884696 -51191476 + AT_rich Low_complexity Low_complexity 1 28 0 1 1141 1695 31 0 0 chr9 72884703 72884895 -51191277 - B2_Mm1a SINE B2 0 193 2 1 1141 944 169 0 0 chr9 72884946 72885094 -51191078 - B1_Mus1 SINE Alu 0 148 1 1 1141 855 153 269 6 chr9 72885110 72885281 -51190891 - B3 SINE B2 0 216 1 1 1141 318 146 52 10 chr9 72885375 72885472 -51190700 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 1141 225 0 0 0 chr9 72885476 72885501 -51190671 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1141 769 188 94 79 chr9 72885579 72885781 -51190391 - B3 SINE B2 -11 205 1 1 1141 394 187 120 0 chr9 72885871 72885946 -51190226 - PB1D10 SINE Alu -5 112 29 1 1141 905 134 0 60 chr9 72886075 72886226 -51189946 - B1_Mus2 SINE Alu 0 147 6 1 1141 404 303 37 110 chr9 72886081 72886244 -51189928 - B4 SINE B4 -69 223 73 1 1141 238 221 14 81 chr9 72886692 72886766 -51189406 + ID4 SINE ID 4 72 -11 1 1141 207 262 169 5 chr9 72886882 72887005 -51189167 - MIRb SINE MIR -115 161 16 1 1141 253 288 21 85 chr9 72887085 72887207 -51188965 + PB1D10 SINE Alu 2 117 -32 1 1141 463 232 36 0 chr9 72887881 72887993 -51188179 - PB1D9 SINE Alu 0 120 5 1 1141 621 209 91 23 chr9 72888005 72888137 -51188035 - B1_Mur1 SINE Alu -7 142 2 1 1141 347 245 25 15 chr9 72888166 72888307 -51187865 + B3 SINE B2 1 205 -11 1 1141 715 158 69 35 chr9 72888712 72888856 -51187316 - B1_Mur1 SINE Alu 0 149 1 1 1141 292 236 101 11 chr9 72889126 72889227 -51186945 + PB1D10 SINE Alu 1 113 -37 1 1141 472 278 26 9 chr9 72889413 72889529 -51186643 - ID_B1 SINE B4 -23 201 84 1 1141 356 126 42 49 chr9 72889655 72889765 -51186407 - B2_Mm2 SINE B2 0 195 47 1 1141 1354 69 40 0 chr9 72889778 72889951 -51186221 - B2_Mm2 SINE B2 -14 181 2 1 1141 413 210 370 0 chr9 72890025 72890163 -51186009 + B3A SINE B2 1 189 -9 1 1141 252 0 0 0 chr9 72890195 72890223 -51185949 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1141 1429 41 35 0 chr9 72890613 72890784 -51185388 + B2_Mm2 SINE B2 2 178 -17 1 1141 914 102 29 14 chr9 72890784 72890914 -51185258 - B2_Mm2 SINE B2 -62 133 3 1 1141 248 0 31 0 chr9 72890919 72890951 -51185221 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1141 372 306 40 0 chr9 72891041 72891165 -51185007 + ID_B1 SINE B4 41 169 -55 1 1141 189 0 0 0 chr9 72891261 72891282 -51184890 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1141 788 113 17 0 chr9 72891282 72891397 -51184775 - B1_Mus2 SINE Alu 0 147 31 1 1141 290 279 25 25 chr9 72891331 72891412 -51184760 - RLTR25B LTR ERVK -530 498 418 1 1141 1149 54 0 57 chr9 72891418 72891575 -51184597 + B1_Mus1 SINE Alu 1 148 0 1 1141 624 214 0 17 chr9 72893447 72893566 -51182606 + ID_B1 SINE B4 106 222 -2 1 1141 186 43 0 0 chr9 72893697 72893720 -51182452 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1141 823 219 12 24 chr9 72894083 72894251 -51181921 + B3A SINE B2 3 168 -30 1 1141 198 0 0 0 chr9 72894258 72894280 -51181892 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1141 1556 35 0 48 chr9 72894298 72894505 -51181667 + L1Md_F3 LINE L1 6376 6572 -12 1 1141 851 245 16 21 chr9 72894531 72894719 -51181453 + B3 SINE B2 16 202 -14 1 1141 511 225 161 8 chr9 72894731 72894861 -51181311 - RSINE1 SINE B4 -8 157 8 1 1141 243 0 0 0 chr9 72894877 72894904 -51181268 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1141 351 255 68 10 chr9 72894908 72895011 -51181161 - PB1D7 SINE Alu -10 110 2 1 1141 642 176 96 0 chr9 72895282 72895407 -51180765 + B3 SINE B2 1 137 -79 1 1141 266 312 115 71 chr9 72895407 72895465 -51180707 + ID_B1 SINE B4 1 191 -33 1 1141 323 218 64 75 chr9 72895804 72895898 -51180274 - ID_B1 SINE B4 -130 94 2 1 1141 811 155 210 0 chr9 72896054 72896235 -51179937 - URR1B DNA MER1_type 0 225 7 1 1141 183 80 0 0 chr9 72896407 72896432 -51179740 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 1 1141 360 0 0 0 chr9 72896442 72896482 -51179690 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1141 360 208 42 0 chr9 72896485 72896557 -51179615 - B3A SINE B2 -121 77 3 1 1141 680 253 0 13 chr9 72897184 72897452 -51178720 + CT-rich Low_complexity Low_complexity 1 264 0 1 1141 422 284 102 0 chr9 72897454 72897581 -51178591 - ID_B1 SINE B4 0 224 85 1 1141 301 234 90 13 chr9 72897656 72897734 -51178438 - PB1D10 SINE Alu 0 117 34 1 1141 717 191 150 23 chr9 72898061 72898234 -51177938 + B3 SINE B2 39 209 -7 1 1141 310 261 82 61 chr9 72898239 72898337 -51177835 + B3 SINE B2 98 197 -19 1 1141 366 42 0 0 chr9 72898363 72898411 -51177761 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 1 1141 1120 211 10 0 chr9 72898900 72899099 -51177073 - ID_B1 SINE B4 -9 215 15 1 1141 222 328 0 17 chr9 72899046 72899105 -51177067 - BC1_Mm scRNA scRNA -86 66 9 1 1141 22 0 0 0 chr9 72899155 72899177 -51176995 + AT_rich Low_complexity Low_complexity 1 22 0 1 1141 1275 48 0 0 chr9 72899182 72899329 -51176843 + B1_Mus2 SINE Alu 1 147 0 1 1141 21 0 0 0 chr9 72899329 72899350 -51176822 + AT_rich Low_complexity Low_complexity 1 21 0 1 1141 233 200 59 20 chr9 72899755 72899806 -51176366 - PB1D7 SINE Alu -3 117 65 1 1141 247 238 31 16 chr9 72899761 72899825 -51176347 - ID_B1 SINE B4 -9 215 151 1 1141 1135 212 87 8 chr9 72899815 72900081 -51176091 + ORR1C1 LTR MaLR 92 378 0 1 1141 972 108 7 20 chr9 72900105 72900256 -51175916 - B1_Mur3 SINE Alu 0 149 1 1 1141 1100 57 42 21 chr9 72900357 72900501 -51175671 + B1_Mus2 SINE Alu 1 147 0 1 1141 202 61 0 57 chr9 72900501 72900536 -51175636 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1141 288 111 0 0 chr9 72901108 72901153 -51175019 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1 1141 399 331 18 90 chr9 72901175 72901341 -51174831 - ID_B1 SINE B4 -70 154 1 1 1141 798 113 39 78 chr9 72901689 72901842 -51174330 - URR1A DNA MER1_type -1 225 79 1 1141 1026 245 5 0 chr9 72901987 72902195 -51173977 - B3 SINE B2 -7 209 1 1 1141 886 231 32 11 chr9 72902269 72902457 -51173715 - B3A SINE B2 -1 197 6 1 1141 285 187 60 107 chr9 72902382 72902466 -51173706 - B4 SINE B4 -212 80 1 1 1141 553 256 15 15 chr9 72902750 72902881 -51173291 - B3 SINE B2 0 216 86 1 1141 358 296 11 22 chr9 72902978 72903068 -51173104 - B3 SINE B2 -126 90 2 1 1141 385 287 90 14 chr9 72903429 72903574 -51172598 + MER5A DNA MER1_type 29 184 -5 1 1141 261 296 79 16 chr9 72903766 72903893 -51172279 - MIRb SINE MIR -23 245 111 1 1141 233 343 51 29 chr9 72903955 72904093 -51172079 - MER5A DNA MER1_type -1 188 48 1 1141 478 330 43 54 chr9 72904772 72904863 -51171309 + B4 SINE B4 4 92 -200 1 1141 627 169 43 134 chr9 72904863 72905011 -51171161 + B1_Mur3 SINE Alu 1 136 -13 1 1141 461 32 16 0 chr9 72905011 72905074 -51171098 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 1 1141 627 169 43 134 chr9 72905074 72905089 -51171083 + B1_Mur3 SINE Alu 137 148 -1 1 1141 337 220 184 83 chr9 72905097 72905249 -51170923 + B4A SINE B4 69 232 -60 1 1141 601 216 32 25 chr9 72905252 72905409 -51170763 + RSINE1 SINE B4 2 159 -6 1 1141 288 0 0 0 chr9 72905500 72905532 -51170640 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1141 1089 174 37 33 chr9 72905646 72905860 -51170312 - B3 SINE B2 -1 215 1 1 1141 828 184 0 52 chr9 72905946 72906101 -51170071 + B1_Mur1 SINE Alu 2 148 -1 1 1141 1233 94 78 0 chr9 72906325 72906505 -51169667 + B2_Mm2 SINE B2 2 195 0 1 1141 235 299 110 37 chr9 72906773 72906930 -51169242 + Tigger15a DNA TcMar 212 380 -335 1 1141 1233 35 7 0 chr9 72906930 72907075 -51169097 + B1_Mus2 SINE Alu 2 147 0 1 1141 243 303 79 0 chr9 72907103 72907192 -51168980 - RSINE1 SINE B4 -69 96 1 1 1141 1261 41 0 0 chr9 72907904 72908051 -51168121 + B1_Mus1 SINE Alu 1 147 -1 1 1141 438 20 0 0 chr9 72908176 72908227 -51167945 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1141 305 323 47 53 chr9 72908234 72908404 -51167768 - HAL1 LINE L1 -172 2335 2167 1 1141 380 211 96 43 chr9 72908404 72908498 -51167674 - B1F SINE Alu 0 149 51 1 1141 383 55 0 18 chr9 72908676 72908731 -51167441 + (CACCC)n Simple_repeat Simple_repeat 3 56 0 1 1141 410 251 175 30 chr9 72909097 72909331 -51166841 - L1M3 LINE L1 -1144 4996 4729 1 1141 928 146 28 0 chr9 72909345 72909489 -51166683 - B1_Mur3 SINE Alu 0 149 2 1 1141 200 111 28 0 chr9 72909537 72909573 -51166599 + (TTGTG)n Simple_repeat Simple_repeat 4 40 0 1 1141 328 269 135 0 chr9 72909580 72909684 -51166488 - PB1D7 SINE Alu 0 120 3 1 1141 237 196 0 0 chr9 72909721 72909772 -51166400 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1141 640 271 64 27 chr9 72909916 72910212 -51165960 - L1M3 LINE L1 -1956 4187 3872 1 1141 1680 27 0 0 chr9 72910212 72910399 -51165773 - B2_Mm1a SINE B2 -6 187 1 1 1141 1425 66 5 16 chr9 72910408 72910593 -51165579 - B2_Mm1t SINE B2 -9 184 2 1 1141 210 71 0 0 chr9 72910602 72910630 -51165542 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1141 1276 35 0 0 chr9 72910631 72910776 -51165396 - B1_Mus2 SINE Alu -1 146 2 1 1141 516 254 134 0 chr9 72910823 72910957 -51165215 + B3A SINE B2 1 152 -46 1 1141 201 39 0 0 chr9 72910958 72910984 -51165188 + (CG)n Simple_repeat Simple_repeat 2 27 0 1 1141 1200 35 0 0 chr9 72910984 72911128 -51165044 + (CA)n Simple_repeat Simple_repeat 1 145 0 1 1141 299 220 21 4 chr9 72911167 72911260 -51164912 + B3 SINE B2 22 119 -74 1 1141 258 32 0 0 chr9 72912214 72912245 -51163927 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1141 948 299 18 22 chr9 72912561 72912838 -51163334 - B4A SINE B4 0 292 17 1 1141 542 165 0 0 chr9 72912854 72912939 -51163233 - B1_Mur3 SINE Alu 0 149 65 1 1141 346 328 22 37 chr9 72912939 72913075 -51163097 - MLT1B LTR MaLR -256 134 1 1 1141 307 189 0 0 chr9 72913137 72913190 -51162982 + B3A SINE B2 4 56 -142 1 1141 812 151 137 17 chr9 72913189 72913212 -51162960 - ORR1D1 LTR MaLR -170 204 178 1 1141 483 18 0 0 chr9 72913212 72913268 -51162904 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1141 812 151 137 17 chr9 72913268 72913419 -51162753 - ORR1D1 LTR MaLR -197 177 9 1 1141 207 0 0 0 chr9 72913959 72913982 -51162190 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1141 406 158 279 29 chr9 72913982 72914086 -51162086 - B1_Mus2 SINE Alu -13 134 5 1 1141 864 234 4 1 chr9 72914111 72914305 -51161867 - B3 SINE B2 -1 197 1 1 1141 588 14 0 0 chr9 72914841 72914910 -51161262 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1141 244 257 73 45 chr9 72916171 72916281 -51159891 - LTR81B LTR ERV1? -903 490 378 1 1141 325 296 12 0 chr9 72916896 72916977 -51159195 + ID4 SINE ID 2 83 0 1 1141 510 248 20 40 chr9 72917018 72917169 -51159003 + B1_Mur1 SINE Alu 2 149 0 1 1141 603 284 7 7 chr9 72917187 72917322 -51158850 + RSINE1 SINE B4 4 138 -27 1 1141 790 298 70 56 chr9 72917478 72917780 -51158392 + MTE2a LTR MaLR 1 306 -73 1 1141 1425 78 10 10 chr9 72917897 72918092 -51158080 + B2_Mm2 SINE B2 1 195 0 1 1141 540 0 0 0 chr9 72918291 72918351 -51157821 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1141 279 247 200 0 chr9 72918455 72918540 -51157632 - PB1D10 SINE Alu -6 111 10 1 1141 22 0 0 0 chr9 72918689 72918711 -51157461 + GC_rich Low_complexity Low_complexity 1 22 0 1 1141 265 198 198 0 chr9 72918757 72918838 -51157334 - PB1 SINE Alu -29 98 2 1 1141 871 198 66 0 chr9 72919348 72919530 -51156642 - B3A SINE B2 -4 194 1 1 1141 267 31 0 0 chr9 72919534 72919566 -51156606 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1141 514 174 18 12 chr9 72919597 72919699 -51156473 + B1_Mur3 SINE Alu 7 149 0 1 1141 727 203 58 0 chr9 72919736 72919874 -51156298 + B1_Mur4 SINE Alu 4 149 -1 1 1141 1294 45 6 0 chr9 72919900 72920056 -51156116 + B2_Mm2 SINE B2 2 158 -37 1 1141 306 0 0 0 chr9 72920057 72920091 -51156081 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 1141 472 244 25 50 chr9 72920875 72920996 -51155176 - B1_Mur1 SINE Alu -27 122 5 1 1141 411 171 0 0 chr9 72921381 72921457 -51154715 + CT-rich Low_complexity Low_complexity 3 78 0 1 1141 783 133 17 0 chr9 72921458 72921578 -51154594 - B1_Mus1 SINE Alu 0 148 27 1 1141 453 36 0 0 chr9 72921581 72921636 -51154536 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1141 885 242 110 20 chr9 72921638 72921883 -51154289 - B4A SINE B4 -18 274 8 1 1141 292 274 143 0 chr9 72922074 72922158 -51154014 - PB1D10 SINE Alu -10 107 12 1 1141 617 254 14 14 chr9 72922211 72922355 -51153817 - B1F2 SINE Alu -1 148 5 1 1141 330 119 34 0 chr9 72922462 72922521 -51153651 + B1_Mur4 SINE Alu 87 147 -3 1 1141 180 0 0 0 chr9 72922528 72922548 -51153624 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1141 451 230 34 42 chr9 72922716 72922834 -51153338 + PB1D10 SINE Alu 1 117 0 1 1141 25 51 0 0 chr9 72922915 72922954 -51153218 + AT_rich Low_complexity Low_complexity 1 39 0 1 1141 252 0 0 0 chr9 72922969 72922997 -51153175 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1141 380 265 152 14 chr9 72923007 72923145 -51153027 - RSINE1 SINE B4 -6 159 3 1 1141 327 149 119 0 chr9 72923491 72923558 -51152614 + PB1D9 SINE Alu 18 92 -28 1 1141 264 59 0 0 chr9 72923558 72923592 -51152580 + (CAAG)n Simple_repeat Simple_repeat 3 36 0 1 1141 1104 58 65 0 chr9 72923673 72923811 -51152361 + B1_Mus2 SINE Alu 1 147 0 1 1141 330 115 0 0 chr9 72923813 72923865 -51152307 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1141 1385 68 20 25 chr9 72923892 72924088 -51152084 + B2_Mm2 SINE B2 1 195 0 1 1141 878 219 42 42 chr9 72924113 72924183 -51151989 - B3 SINE B2 -1 215 148 1 1141 378 0 0 0 chr9 72924183 72924225 -51151947 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1141 926 154 35 0 chr9 72924225 72924369 -51151803 - B3A SINE B2 -50 148 1 1 1141 385 212 165 0 chr9 72924967 72925052 -51151120 - PB1D10 SINE Alu -17 100 2 1 1141 239 279 59 0 chr9 72925550 72925618 -51150554 - ID4 SINE ID -10 73 2 1 1141 1344 90 11 0 chr9 72925673 72925850 -51150322 + B2_Mm1t SINE B2 1 179 -14 1 1141 364 142 0 5 chr9 72925901 72925966 -51150206 + B2_Mm2 SINE B2 47 109 -107 1 1141 1030 222 0 21 chr9 72926143 72926336 -51149836 - B3 SINE B2 0 216 28 1 1141 216 286 48 0 chr9 72926283 72926346 -51149826 - B4A SINE B4 -211 81 16 1 1141 344 211 189 0 chr9 72926349 72926439 -51149733 - PB1D10 SINE Alu -1 116 10 1 1141 604 208 176 0 chr9 72926446 72926571 -51149601 - B1_Mur1 SINE Alu -1 148 2 1 1141 328 147 159 3 chr9 72926636 72926735 -51149437 - L1MB7 LINE L1 -225 5949 5830 1 1141 756 269 5 20 chr9 72926752 72926949 -51149223 - B3A SINE B2 -3 195 2 1 1141 2482 106 18 128 chr9 72927314 72927406 -51148766 - RLTR9D LTR ERVK 0 403 320 1 1141 1320 20 0 0 chr9 72927406 72927553 -51148619 + B1_Mm SINE Alu 1 147 0 1 1141 2482 106 18 128 chr9 72927553 72927913 -51148259 - RLTR9D LTR ERVK -84 319 1 1 1141 1494 50 28 0 chr9 72928100 72928281 -51147891 - B2_Mm1a SINE B2 -6 187 2 1 1141 1037 106 7 14 chr9 72928510 72928654 -51147518 - B1_Mus1 SINE Alu -1 147 5 1 1141 776 163 50 0 chr9 72928665 72928806 -51147366 - B1_Mus1 SINE Alu 0 148 1 1 1141 234 0 0 0 chr9 72928806 72928832 -51147340 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1141 229 275 0 68 chr9 72929130 72929204 -51146968 - tRNA-Ala-GCA tRNA tRNA 0 75 7 1 1141 222 338 0 135 chr9 72929135 72929224 -51146948 - ID4 SINE ID -6 77 1 1 1141 450 0 0 0 chr9 72929226 72929276 -51146896 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1141 716 97 0 10 chr9 72929287 72929391 -51146781 - B2_Mm2 SINE B2 0 195 93 1 1141 290 237 7 17 chr9 72929417 72929509 -51146663 - B1F1 SINE Alu -13 136 17 1 1141 659 280 31 19 chr9 72929553 72929713 -51146459 - RSINE1 SINE B4 -2 163 2 1 1141 24 0 0 0 chr9 72929784 72929808 -51146364 + AT_rich Low_complexity Low_complexity 1 24 0 1 1141 919 209 63 24 chr9 72929816 72930022 -51146150 - ID_B1 SINE B4 -7 217 4 1 1141 419 0 20 0 chr9 72930763 72930814 -51145358 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1141 825 329 18 18 chr9 72930832 72931117 -51145055 - B4A SINE B4 0 292 8 1 1141 710 182 14 0 chr9 72931120 72931268 -51144904 + CT-rich Low_complexity Low_complexity 3 152 0 1 1141 1177 75 7 0 chr9 72931268 72931414 -51144758 - B1_Mus2 SINE Alu 0 147 1 1 1141 278 360 45 36 chr9 72931480 72931702 -51144470 - L1MC5 LINE L1 -60 7901 7678 1 1141 2112 171 28 32 chr9 72932232 72932668 -51143504 + RMER10A LTR ERVL 1 434 -8 1 1141 180 0 0 0 chr9 72932708 72932728 -51143444 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1141 854 37 0 0 chr9 72933130 72933238 -51142934 - B1_Mm SINE Alu -39 108 1 1 1141 466 209 9 79 chr9 72933136 72933250 -51142922 - MT2B LTR ERVL -344 257 152 1 1141 324 213 39 26 chr9 72933234 72933311 -51142861 - MER5A DNA MER1_type -108 81 4 1 1141 540 217 197 0 chr9 72934052 72934204 -51141968 - B3A SINE B2 -16 182 1 1 1141 517 229 86 0 chr9 72934349 72934454 -51141718 - PB1D10 SINE Alu -1 116 3 1 1141 246 62 0 0 chr9 72934481 72934513 -51141659 + (TCC)n Simple_repeat Simple_repeat 3 34 0 1 1141 1313 117 63 5 chr9 72934515 72934738 -51141434 - RLTR28 LTR ERVL -222 302 67 1 1141 970 122 13 7 chr9 72935266 72935415 -51140757 - B1_Mur4 SINE Alu 0 150 1 1 1141 2298 116 29 48 chr9 72935828 72936246 -51139926 - RMER17C LTR ERVK 0 410 1 1 1141 922 240 60 107 chr9 72936432 72936527 -51139645 + B4 SINE B4 2 80 -212 1 1141 682 167 0 40 chr9 72936527 72936652 -51139520 + PB1D9 SINE Alu 1 120 0 1 1141 922 240 60 107 chr9 72936652 72936855 -51139317 + B4 SINE B4 81 286 -6 1 1141 783 312 109 19 chr9 72936902 72937278 -51138894 - MLT2F LTR ERVL -59 604 195 1 1141 475 325 90 34 chr9 72937965 72938287 -51137885 + Charlie25 DNA MER1_type 1384 1723 -801 1 1141 1013 208 19 24 chr9 72938349 72938556 -51137616 + B3 SINE B2 1 206 -10 1 1141 258 352 36 27 chr9 72938669 72938780 -51137392 + Charlie25 DNA MER1_type 2100 2211 -313 1 1141 269 302 0 0 chr9 72938775 72938838 -51137334 - BC1_Mm scRNA scRNA -72 80 18 1 1141 240 184 0 0 chr9 72938838 72938887 -51137285 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1141 877 62 0 0 chr9 72938897 72939010 -51137162 + B1_Mus1 SINE Alu 36 148 0 1 1141 565 263 63 23 chr9 72939025 72939211 -51136961 - B3A SINE B2 -27 189 2 1 1141 1346 93 11 0 chr9 72939265 72939448 -51136724 - B2_Mm2 SINE B2 -9 186 2 1 1141 207 0 0 0 chr9 72939457 72939480 -51136692 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1141 741 171 15 8 chr9 72939480 72939610 -51136562 - B1_Mus2 SINE Alu -8 139 9 1 1141 236 231 91 33 chr9 72939853 72939974 -51136198 + ORR1B1-int LTR MaLR 627 754 -755 1 1141 825 115 8 24 chr9 72939885 72940010 -51136162 + B1_Mus2 SINE Alu 18 140 -7 1 1141 263 286 117 0 chr9 72940025 72940102 -51136070 - B1F2 SINE Alu -61 88 3 1 1141 243 0 0 0 chr9 72940151 72940178 -51135994 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1141 1212 62 0 0 chr9 72940202 72940348 -51135824 + B1_Mm SINE Alu 1 146 -1 1 1141 1406 73 6 11 chr9 72940366 72940547 -51135625 - B2_Mm2 SINE B2 -14 181 2 1 1141 387 232 0 12 chr9 72940697 72940780 -51135392 - B1_Mur2 SINE Alu -22 127 46 1 1141 521 292 35 0 chr9 72940959 72941103 -51135069 + B1F SINE Alu 1 149 0 1 1141 697 235 30 21 chr9 72941172 72941353 -51134819 + ID_B1 SINE B4 70 245 -47 1 1141 830 167 102 17 chr9 72941437 72941761 -51134411 + RMER10A LTR ERVL 52 442 0 1 1141 1187 256 80 118 chr9 72941776 72942186 -51133986 + RLTR18 LTR ERVK 5 400 -216 1 1141 1186 55 0 7 chr9 72942186 72942333 -51133839 - B1_Mus2 SINE Alu 0 147 2 1 1141 1187 256 80 118 chr9 72942333 72942448 -51133724 + RLTR18 LTR ERVK 401 510 -106 1 1141 290 358 32 72 chr9 72942579 72942829 -51133343 + MLT1L LTR MaLR 1 240 -370 1 1141 207 69 0 0 chr9 72944022 72944051 -51132121 + (TATG)n Simple_repeat Simple_repeat 1 29 0 1 1141 743 223 7 13 chr9 72944407 72944557 -51131615 - B1_Mur1 SINE Alu 0 149 1 1 1141 587 241 42 7 chr9 72944848 72944990 -51131182 + B1_Mus1 SINE Alu 1 147 -1 1 1141 905 104 0 0 chr9 72944996 72945121 -51131051 + B1_Mus1 SINE Alu 3 127 -21 1 1141 21 36 0 0 chr9 72945282 72945310 -51130862 + AT_rich Low_complexity Low_complexity 1 28 0 1 1141 28 0 0 0 chr9 72945391 72945419 -51130753 + AT_rich Low_complexity Low_complexity 1 28 0 1 1141 225 256 19 126 chr9 72945487 72945583 -51130589 - LTR58 LTR ERV1 -412 267 183 1 1141 882 214 99 0 chr9 72945583 72945775 -51130397 - B3 SINE B2 -5 211 1 1 1141 1116 175 92 31 chr9 72946316 72946576 -51129596 - RMER10A LTR ERVL -2 440 165 1 1141 450 161 0 47 chr9 72946778 72946863 -51129309 + PB1D9 SINE Alu 37 117 -3 1 1141 217 118 19 19 chr9 72947006 72947058 -51129114 + G-rich Low_complexity Low_complexity 2 53 0 1 1141 248 161 391 11 chr9 72947089 72947181 -51128991 - B2_Mm2 SINE B2 -19 176 50 1 1141 1301 96 11 0 chr9 72947214 72947391 -51128781 - B2_Mm1t SINE B2 -14 179 1 1 1141 819 161 8 0 chr9 72947392 72947516 -51128656 + B1_Mur4 SINE Alu 15 139 -11 1 1141 256 276 48 121 chr9 72947410 72947699 -51128473 + RMER17A LTR ERVK 158 425 -326 1 1141 217 150 25 0 chr9 72947700 72947740 -51128432 + CT-rich Low_complexity Low_complexity 3 43 0 1 1141 410 222 0 11 chr9 72947740 72947831 -51128341 - PB1D9 SINE Alu -21 99 10 1 1141 516 231 52 0 chr9 72947978 72948112 -51128060 + B1F1 SINE Alu 1 141 -8 1 1141 1257 51 81 43 chr9 72948200 72948385 -51127787 + B2_Mm2 SINE B2 3 194 -1 1 1141 321 337 81 27 chr9 72948459 72948645 -51127527 + B3A SINE B2 2 197 -1 1 1141 899 127 15 0 chr9 72948935 72949069 -51127103 - B1_Mus1 SINE Alu -3 145 10 1 1141 1342 72 38 27 chr9 72949088 72949274 -51126898 - B2_Mm2 SINE B2 -7 188 1 1 1141 721 158 94 0 chr9 72949561 72949688 -51126484 - B1_Mus1 SINE Alu -8 140 2 1 1141 676 187 109 22 chr9 72949842 72949979 -51126193 - B1_Mur4 SINE Alu 0 150 2 1 1141 1590 217 35 22 chr9 72952525 72952892 -51123280 + Lx5 LINE L1 6672 7043 -7 1 1141 431 241 45 8 chr9 72953127 72953261 -51122911 + B1_Mur1 SINE Alu 2 140 -9 1 1141 701 180 43 14 chr9 72953413 72953554 -51122618 - B1_Mur1 SINE Alu 0 149 5 1 1141 442 300 58 0 chr9 72954294 72954414 -51121758 - ID_B1 SINE B4 -19 205 79 1 1141 1170 83 26 62 chr9 72954868 72955060 -51121112 + B2_Mm2 SINE B2 2 186 -9 1 1141 924 233 32 18 chr9 72955208 72955427 -51120745 - ID_B1 SINE B4 -1 223 2 1 1141 225 297 52 122 chr9 72955434 72955549 -51120623 - B1F1 SINE Alu -40 109 3 1 1141 1088 101 7 7 chr9 72955571 72955720 -51120452 + B1_Mur4 SINE Alu 1 149 -1 1 1141 23 33 0 0 chr9 72955762 72955792 -51120380 + AT_rich Low_complexity Low_complexity 1 30 0 1 1141 520 270 116 6 chr9 72955819 72955983 -51120189 + B3A SINE B2 1 182 -16 1 1141 236 227 49 85 chr9 72956031 72956113 -51120059 + ID4 SINE ID 3 81 -2 1 1141 471 189 30 40 chr9 72956480 72956579 -51119593 + RSINE1 SINE B4 11 108 -57 1 1141 328 157 13 67 chr9 72956694 72956769 -51119403 + MurSatRep1 Unknown Unknown 208 278 -1859 1 1141 216 0 0 0 chr9 72956778 72956802 -51119370 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1141 320 280 77 40 chr9 72956833 72956966 -51119206 - B3A SINE B2 -13 203 78 1 1141 259 186 0 0 chr9 72956964 72957007 -51119165 - B2_Mm2 SINE B2 -152 43 1 1 1141 1269 100 0 53 chr9 72957007 72957197 -51118975 - B2_Mm2 SINE B2 -15 180 1 1 1141 589 310 55 10 chr9 72957203 72957405 -51118767 - B3 SINE B2 0 216 6 1 1141 1182 189 302 3 chr9 72957539 72957853 -51118319 + MTD LTR MaLR 4 411 -8 1 1141 353 243 0 14 chr9 72957858 72957929 -51118243 - PB1 SINE Alu -40 87 18 1 1141 893 205 159 17 chr9 72958010 72958243 -51117929 - ORR1D1 LTR MaLR -4 370 105 1 1141 327 238 38 0 chr9 72958373 72958453 -51117719 + ID4 SINE ID 1 83 0 1 1141 570 263 14 63 chr9 72958602 72958744 -51117428 - B1_Mur1 SINE Alu -5 144 10 1 1141 1283 34 0 0 chr9 72958789 72958936 -51117236 - B1_Mm SINE Alu 0 147 1 1 1141 472 242 40 0 chr9 72958947 72959046 -51117126 - PB1D9 SINE Alu -7 113 11 1 1141 431 186 226 78 chr9 72959071 72959275 -51116897 - RMER2 LTR ERV1 0 567 334 1 1141 904 174 79 0 chr9 72959673 72959863 -51116309 + B3 SINE B2 5 209 -7 1 1141 1358 81 11 21 chr9 72959901 72960090 -51116082 - B2_Mm2 SINE B2 -8 187 1 1 1141 24 0 0 0 chr9 72960101 72960125 -51116047 + AT_rich Low_complexity Low_complexity 1 24 0 1 1141 1282 181 0 19 chr9 72960214 72960428 -51115744 - B3 SINE B2 -6 210 1 1 1141 614 206 68 8 chr9 72960428 72960560 -51115612 + B1_Mur1 SINE Alu 10 149 0 1 1141 304 207 35 0 chr9 72960570 72960628 -51115544 + RSINE1 SINE B4 65 124 -41 1 1141 1419 58 16 10 chr9 72960665 72960857 -51115315 - B2_Mm1a SINE B2 0 193 1 1 1141 477 0 0 0 chr9 72961098 72961151 -51115021 + (CTG)n Simple_repeat Simple_repeat 3 55 0 1 1141 946 51 76 55 chr9 72961985 72962130 -51114042 - B1_Mus1 SINE Alu 0 148 1 1 1141 223 49 24 24 chr9 72962154 72962196 -51113976 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1141 1231 34 0 7 chr9 72962199 72962347 -51113825 - B1_Mm SINE Alu 0 147 1 1 1141 246 250 0 27 chr9 72962960 72963034 -51113138 + CT-rich Low_complexity Low_complexity 3 74 0 1 1141 360 94 0 0 chr9 72963986 72964039 -51112133 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1 1141 24 0 0 0 chr9 72964386 72964410 -51111762 + AT_rich Low_complexity Low_complexity 1 24 0 1 1141 348 64 0 0 chr9 72964741 72964788 -51111384 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1141 1229 35 7 0 chr9 72964788 72964933 -51111239 - B1_Mm SINE Alu 0 147 2 1 1141 1239 41 7 0 chr9 72964964 72965110 -51111062 + B1_Mm SINE Alu 1 147 0 1 1141 227 130 239 0 chr9 72965129 72965175 -51110997 - PB1D7 SINE Alu -44 76 20 1 1141 294 253 184 62 chr9 72966039 72966389 -51109783 - L1MC4a LINE L1 -407 7635 7224 1 1141 239 256 60 67 chr9 72966487 72966621 -51109551 - L1MC4a LINE L1 -966 7076 6944 1 1141 6992 57 3 14 chr9 72966690 72967567 -51108605 - L1Md_F2 LINE L1 -19 6563 5696 1 1141 1224 48 0 0 chr9 72967634 72967780 -51108392 - B1_Mm SINE Alu 0 147 2 1 1141 855 164 160 22 chr9 72967781 72967962 -51108210 - B3 SINE B2 -3 213 8 1 1141 198 171 0 0 chr9 72967967 72968008 -51108164 + T-rich Low_complexity Low_complexity 1 41 0 1 1141 414 209 81 9 chr9 72968008 72968119 -51108053 - PB1D9 SINE Alu 0 120 2 1 1141 298 0 23 23 chr9 72968126 72968169 -51108003 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1141 703 262 0 0 chr9 72968170 72968311 -51107861 - RSINE1 SINE B4 -20 145 5 1 1141 201 325 0 88 chr9 72969305 72969396 -51106776 - MER5B DNA MER1_type -7 171 89 1 1141 186 43 0 0 chr9 72970807 72970830 -51105342 + (TCTCCC)n Simple_repeat Simple_repeat 3 25 0 1 1141 195 250 0 0 chr9 72970830 72970881 -51105291 + T-rich Low_complexity Low_complexity 2 52 0 1 1141 692 209 58 0 chr9 72970881 72971020 -51105152 - B1_Mur3 SINE Alu 0 149 3 1 1141 659 155 31 8 chr9 72971305 72971435 -51104737 + B1_Mus1 SINE Alu 1 133 -15 1 1141 216 143 0 0 chr9 72971609 72971651 -51104521 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1141 1290 177 131 37 chr9 72971658 72972052 -51104120 - RMER4B LTR ERVK -23 588 108 1 1141 314 192 82 0 chr9 72972079 72972152 -51104020 + RMER20A LTR ERVK 49 127 -389 1 1141 535 219 50 16 chr9 72972311 72972474 -51103698 - B3 SINE B2 -4 191 24 1 1141 476 218 175 102 chr9 72972746 72972924 -51103248 - B3 SINE B2 0 216 7 1 1141 911 151 0 7 chr9 72973462 72973609 -51102563 - B1_Mur4 SINE Alu -4 146 1 1 1141 500 180 273 28 chr9 72973639 72973782 -51102390 + MT2A LTR ERVL 47 224 -309 1 1141 740 211 149 0 chr9 72973798 72974006 -51102166 + MT2A LTR ERVL 295 533 0 1 1141 407 202 32 88 chr9 72974241 72974366 -51101806 + MLT1A1 LTR MaLR 291 408 0 1 1141 242 341 42 56 chr9 72974444 72974587 -51101585 + MER5B DNA MER1_type 17 157 -21 1 1141 850 205 31 16 chr9 72975548 72975741 -51100431 - B3A SINE B2 -1 197 2 1 1141 304 280 54 0 chr9 72975905 72975998 -51100174 - L2a LINE L2 0 3426 3329 1 1141 670 270 42 5 chr9 72976122 72976312 -51099860 - B3A SINE B2 0 198 2 1 1141 451 346 59 0 chr9 72976616 72976769 -51099403 - B4 SINE B4 -130 162 1 1 1141 914 142 278 0 chr9 72977022 72977191 -51098981 + B3 SINE B2 1 216 0 1 1141 232 227 361 51 chr9 72977202 72977360 -51098812 + B3 SINE B2 3 209 -7 1 1141 528 200 9 0 chr9 72978675 72978780 -51097392 + B3A SINE B2 38 143 -55 1 1141 231 36 0 0 chr9 72978784 72978812 -51097360 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1141 1039 191 19 14 chr9 72979042 72979254 -51096918 + B3 SINE B2 4 216 0 1 1141 370 262 108 58 chr9 72979688 72979827 -51096345 + B3A SINE B2 1 145 -53 1 1141 378 61 0 0 chr9 72979827 72979876 -51096296 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1141 291 299 54 92 chr9 72979876 72979920 -51096252 + B2_Mm2 SINE B2 136 176 -19 1 1141 440 35 17 0 chr9 72979931 72979989 -51096183 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1141 198 0 0 0 chr9 72979989 72980011 -51096161 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1141 263 348 24 101 chr9 72980193 72980401 -51095771 - RMER4A LTR ERVK -249 217 26 1 1141 452 73 0 5 chr9 72981363 72981428 -51094744 - B2_Mm2 SINE B2 -107 109 47 1 1141 215 171 24 0 chr9 72981392 72981433 -51094739 - B4 SINE B4 -210 82 41 1 1141 1360 69 11 0 chr9 72981472 72981646 -51094526 - B2_Mm1t SINE B2 -15 178 3 1 1141 367 244 14 130 chr9 72982130 72982276 -51093896 + RSINE1 SINE B4 1 129 -36 1 1141 21 36 0 0 chr9 72982696 72982724 -51093448 + AT_rich Low_complexity Low_complexity 1 28 0 1 1141 803 213 72 31 chr9 72982724 72982918 -51093254 - B3 SINE B2 -14 202 1 1 1141 889 238 0 58 chr9 72982974 72983179 -51092993 + B3A SINE B2 2 194 -4 1 1141 525 224 0 94 chr9 72983414 72983542 -51092630 - PB1D9 SINE Alu 0 120 5 1 1141 7097 136 7 7 chr9 72983633 72985018 -51091154 - Lx LINE L1 0 6654 5271 1 1141 848 287 85 90 chr9 72985765 72986175 -51089997 - MLT1D LTR MaLR -82 423 16 1 1141 318 250 111 82 chr9 72986499 72986634 -51089538 - B3A SINE B2 -2 196 37 1 1141 231 146 0 0 chr9 72986656 72986697 -51089475 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1141 751 173 12 33 chr9 72986697 72986856 -51089316 - B3 SINE B2 -21 172 5 1 1141 230 116 23 0 chr9 72986960 72987003 -51089169 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1 1141 245 150 0 0 chr9 72987090 72987130 -51089042 - B3 SINE B2 -175 41 2 1 1141 925 164 0 7 chr9 72987149 72987296 -51088876 - B1_Mur3 SINE Alu -1 148 3 1 1141 1224 44 119 0 chr9 72987888 72988047 -51088125 - B2_Mm1t SINE B2 -14 179 2 1 1141 709 138 85 54 chr9 72988229 72988359 -51087813 - B1_Mur4 SINE Alu 0 150 17 1 1141 304 326 51 43 chr9 72988243 72988381 -51087791 - B4A SINE B4 -72 220 82 1 1141 27 29 0 0 chr9 72988795 72988829 -51087343 + AT_rich Low_complexity Low_complexity 1 34 0 1 1141 360 43 0 0 chr9 72988848 72988894 -51087278 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1141 409 261 43 17 chr9 72988894 72989011 -51087161 - RSINE1 SINE B4 -41 124 5 1 1141 396 242 0 36 chr9 72989127 72989243 -51086929 - BC1_Mm scRNA scRNA -43 109 1 1 1141 728 204 231 6 chr9 72989331 72989504 -51086668 + B3 SINE B2 4 215 -1 1 1141 26 0 0 0 chr9 72989514 72989540 -51086632 + AT_rich Low_complexity Low_complexity 1 26 0 1 1141 573 251 124 11 chr9 72989774 72989951 -51086221 + B3A SINE B2 1 197 -1 1 1141 878 221 30 5 chr9 72989955 72990155 -51086017 - L1_Rod LINE L1 -708 5592 5388 1 1141 842 170 7 0 chr9 72990170 72990311 -51085861 + B1_Mus1 SINE Alu 6 147 -1 1 1141 1211 107 12 0 chr9 72990318 72990486 -51085686 + B2_Mm1t SINE B2 10 179 -14 1 1141 322 130 355 0 chr9 72990533 72990643 -51085529 + B2_Mm2 SINE B2 47 195 0 1 1141 2730 151 2 2 chr9 72990715 72991128 -51085044 - MTC LTR MaLR -8 413 1 1 1141 325 323 12 5 chr9 72991131 72991297 -51084875 - L1_Rod LINE L1 -813 5330 5100 1 1141 560 278 31 16 chr9 72991374 72991550 -51084622 + Lx7 LINE L1 5551 5752 -1944 1 1141 1274 115 0 40 chr9 72991550 72991711 -51084461 + B2_Mm2 SINE B2 2 162 -33 1 1141 216 0 0 0 chr9 72991711 72991735 -51084437 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1141 1274 115 0 40 chr9 72991735 72991772 -51084400 + B2_Mm2 SINE B2 163 192 -3 1 1141 541 294 36 59 chr9 72991772 72991899 -51084273 + Lx7 LINE L1 5727 5847 0 1 1141 432 0 0 0 chr9 72991902 72991950 -51084222 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1141 1242 29 0 0 chr9 72992033 72992173 -51083999 + B1_Mus2 SINE Alu 2 141 -6 1 1141 216 0 0 0 chr9 72992176 72992200 -51083972 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1141 235 339 16 0 chr9 72992353 72992415 -51083757 - B1F2 SINE Alu -81 68 6 1 1141 1222 127 22 0 chr9 72993160 72993341 -51082831 - B2_Mm1t SINE B2 -7 186 2 1 1141 279 41 40 20 chr9 72993342 72993392 -51082780 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1141 942 113 0 0 chr9 72993392 72993525 -51082647 - B1_Mus1 SINE Alu -10 138 6 1 1141 1031 221 10 10 chr9 72993541 72993747 -51082425 - B3 SINE B2 -3 213 8 1 1141 532 252 25 25 chr9 72993787 72993905 -51082267 - RSINE1 SINE B4 -20 145 28 1 1141 387 298 32 16 chr9 72993898 72994021 -51082151 - B4A SINE B4 -57 235 111 1 1141 790 228 75 6 chr9 72994137 72994296 -51081876 + B3A SINE B2 3 172 -26 1 1141 207 69 0 0 chr9 72994304 72994333 -51081839 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 1 1141 505 269 95 95 chr9 72995119 72995143 -51081029 - B4A SINE B4 -3 289 270 1 1141 306 0 0 0 chr9 72995143 72995177 -51080995 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1141 505 269 95 95 chr9 72995177 72995209 -51080963 - B4A SINE B4 -23 269 129 1 1141 745 190 28 14 chr9 72995209 72995353 -51080819 - B1_Mur1 SINE Alu -3 146 1 1 1141 354 284 49 0 chr9 72995377 72995479 -51080693 - B4A SINE B4 -184 108 2 1 1141 23 0 0 0 chr9 72995484 72995507 -51080665 + AT_rich Low_complexity Low_complexity 1 23 0 1 1141 1105 199 19 9 chr9 72996165 72996378 -51079794 - B3 SINE B2 0 216 2 1 1141 25 31 0 0 chr9 72996513 72996545 -51079627 + AT_rich Low_complexity Low_complexity 1 32 0 1 1141 210 118 0 0 chr9 72996616 72996650 -51079522 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1 1141 2780 131 18 16 chr9 72996704 72997242 -51078930 + RMER4B LTR ERVK 14 585 0 1 1141 751 263 26 0 chr9 72997243 72997395 -51078777 - B3A SINE B2 -41 157 2 1 1141 342 302 2 16 chr9 72997431 72997530 -51078642 + RSINE1 SINE B4 1 97 -195 1 1141 1146 57 0 0 chr9 72997602 72997761 -51078411 + (TC)n Simple_repeat Simple_repeat 1 159 0 1 1141 882 162 0 21 chr9 72997776 72997921 -51078251 - B1_Mur4 SINE Alu -7 143 2 1 1141 1036 196 34 29 chr9 72998646 72998851 -51077321 + B3 SINE B2 1 206 -10 1 1141 201 258 0 0 chr9 72998911 72998977 -51077195 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1141 323 26 0 0 chr9 72999058 72999097 -51077075 + MTC LTR MaLR 1 39 -380 1 1141 861 132 105 0 chr9 72999115 72999267 -51076905 + MTC LTR MaLR 170 337 -84 1 1141 578 241 44 44 chr9 72999291 72999473 -51076699 - MTC LTR MaLR 0 421 240 1 1141 474 203 0 0 chr9 72999501 72999649 -51076523 + GA-rich Low_complexity Low_complexity 2 149 0 1 1141 726 93 0 18 chr9 72999652 72999761 -51076411 + B1_Mus2 SINE Alu 40 146 -1 1 1141 723 192 20 0 chr9 73000154 73000300 -51075872 - B1_Mur1 SINE Alu 0 149 1 1 1141 629 211 49 0 chr9 73000468 73000591 -51075581 - B3A SINE B2 -69 129 1 2 1141 521 120 0 11 chr9 73000612 73000705 -51075467 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 1141 399 236 189 0 chr9 73000707 73000834 -51075338 - B3A SINE B2 -47 151 1 4 1141 1422 84 21 0 chr9 73000893 73001083 -51075089 + B2_Mm2 SINE B2 1 194 -1 5 1141 641 306 88 4 chr9 73001220 73001482 -51074690 + B4A SINE B4 1 284 -8 6 1141 804 40 0 0 chr9 73001518 73001618 -51074554 + (CA)n Simple_repeat Simple_repeat 2 101 0 7 1141 207 161 0 0 chr9 73002395 73002426 -51073746 + polypyrimidine Low_complexity Low_complexity 3 33 0 8 1141 802 183 35 0 chr9 73002430 73002572 -51073600 - B1_Mus1 SINE Alu 0 148 2 9 1141 609 250 161 0 chr9 73002581 73002761 -51073411 - B3 SINE B2 -7 209 1 1 1141 333 0 0 0 chr9 73002908 73002945 -51073227 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1141 368 335 52 28 chr9 73002945 73003157 -51073015 - LTR16A LTR ERVL -131 320 104 1 1141 595 215 0 11 chr9 73004209 73004388 -51071784 + (CATA)n Simple_repeat Simple_repeat 4 180 0 1 1141 466 238 12 6 chr9 73004355 73004520 -51071652 + (CATATA)n Simple_repeat Simple_repeat 6 171 0 1 1141 34 0 0 0 chr9 73004906 73004940 -51071232 + AT_rich Low_complexity Low_complexity 1 34 0 1 1141 2561 28 151 3 chr9 73004945 73005263 -51070909 + RLTR10B2 LTR ERVK 1 365 0 1 1141 903 223 51 10 chr9 73005265 73005460 -51070712 - B3 SINE B2 -13 203 1 1 1141 21 0 0 0 chr9 73005462 73005483 -51070689 + AT_rich Low_complexity Low_complexity 1 21 0 1 1141 658 291 77 0 chr9 73005634 73005830 -51070342 - ID_B1 SINE B4 -7 217 7 1 1141 1128 65 0 0 chr9 73006182 73006320 -51069852 + B1_Mus1 SINE Alu 1 138 -10 2 1141 261 0 0 0 chr9 73006320 73006349 -51069823 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1141 695 236 52 62 chr9 73006408 73006564 -51069608 + B3A SINE B2 2 161 -37 2 1141 468 0 0 0 chr9 73006564 73006616 -51069556 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1141 695 236 52 62 chr9 73006616 73006653 -51069519 + B3A SINE B2 162 193 -5 2 142 407 270 64 26 chr9 73007033 73007189 -51068983 - MER5A1 DNA MER1_type -3 163 2 2 1142 306 0 0 0 chr9 73007299 73007333 -51068839 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1142 525 32 0 0 chr9 73007604 73007667 -51068505 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2 1142 351 208 52 0 chr9 73007667 73007744 -51068428 - ID_B1 SINE B4 -14 210 130 2 1142 821 120 0 43 chr9 73007752 73007891 -51068281 - B1_Mur1 SINE Alu 0 149 17 2 1142 494 143 11 0 chr9 73007915 73008006 -51068166 + (TG)n Simple_repeat Simple_repeat 1 92 0 2 1142 602 233 12 30 chr9 73008006 73008170 -51068002 - RSINE1 SINE B4 0 165 5 3 1142 457 225 177 8 chr9 73008171 73008301 -51067871 - ID_B1 SINE B4 -68 156 5 2 1142 279 0 0 0 chr9 73009553 73009584 -51066588 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 1142 1126 40 53 0 chr9 73009584 73009735 -51066437 - B2_Mm1a SINE B2 -33 160 2 3 1142 471 233 51 8 chr9 73009822 73009939 -51066233 - B4 SINE B4 -1 291 170 3 1142 256 338 0 12 chr9 73009985 73010066 -51066106 - B4A SINE B4 -212 80 1 3 1142 452 266 88 8 chr9 73010196 73010321 -51065851 + RSINE1 SINE B4 1 135 -30 3 1142 21 57 0 0 chr9 73010347 73010382 -51065790 + AT_rich Low_complexity Low_complexity 1 35 0 3 1142 204 179 0 0 chr9 73011384 73011423 -51064749 + CT-rich Low_complexity Low_complexity 2 40 0 3 1142 205 255 58 19 chr9 73012376 73012480 -51063692 + (TATATG)n Simple_repeat Simple_repeat 5 112 0 3 1142 484 282 91 15 chr9 73012498 73012696 -51063476 - B4A SINE B4 -32 260 48 3 1142 1761 188 76 20 chr9 73014038 73014434 -51061738 - MTD LTR MaLR 0 419 2 4 1142 1549 96 13 4 chr9 73014631 73014862 -51061310 - L1_Mus3 LINE L1 -1 6637 6405 4 1142 723 237 15 0 chr9 73014864 73014995 -51061177 + ETnERV2-int LTR ERVK 7070 7202 -204 4 1142 3323 48 12 28 chr9 73015372 73015800 -51060372 - L1_Mus3 LINE L1 -226 6412 5992 4 1142 2031 61 0 76 chr9 73015813 73016114 -51060058 - L1_Mus2 LINE L1 -6 6560 6283 4 1142 4075 63 19 2 chr9 73016114 73016837 -51059335 + L1_Mus2 LINE L1 5377 6110 -456 4 1142 718 233 55 7 chr9 73017034 73017232 -51058940 - B3A SINE B2 -6 210 2 4 1142 1198 231 55 112 chr9 73017234 73017619 -51058553 + MTE2a LTR MaLR 1 363 -16 4 1142 3216 187 115 88 chr9 73018491 73019325 -51056847 + RMER13A LTR ERVK 1 857 -3 4 1142 1433 104 58 34 chr9 73019599 73019947 -51056225 - LTRIS4 LTR ERV1 0 512 122 4 1142 297 70 0 0 chr9 73019955 73019998 -51056174 - MuRRS4-int LTR ERV1 0 5063 5021 4 1142 925 95 0 55 chr9 73020084 73020229 -51055943 + B1_Mur3 SINE Alu 2 138 -11 5 1142 252 0 0 0 chr9 73020229 73020257 -51055915 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1142 1338 91 0 21 chr9 73020298 73020489 -51055683 - B2_Mm2 SINE B2 -7 188 2 5 1142 714 249 75 17 chr9 73020625 73020866 -51055306 + B4 SINE B4 3 257 -35 5 1142 647 198 0 60 chr9 73020859 73020993 -51055179 + B3A SINE B2 20 145 -53 5 1142 300 137 0 0 chr9 73020996 73021047 -51055125 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1142 234 301 13 27 chr9 73021082 73021157 -51055015 + B4 SINE B4 216 289 -3 5 1142 242 317 0 55 chr9 73022098 73022225 -51053947 + CT-rich Low_complexity Low_complexity 4 123 0 5 1142 533 309 78 21 chr9 73022304 73022588 -51053584 - L2a LINE L2 -7 3419 3120 5 1142 24 32 0 0 chr9 73023173 73023204 -51052968 + AT_rich Low_complexity Low_complexity 1 31 0 5 1142 389 51 0 17 chr9 73023697 73023757 -51052415 - B1_Mur4 SINE Alu 0 150 92 6 1142 1361 103 5 25 chr9 73023766 73023965 -51052207 - B2_Mm2 SINE B2 0 195 1 6 1142 1731 143 23 112 chr9 73024527 73024921 -51051251 + ORR1B2 LTR MaLR 1 359 -8 6 1142 498 259 18 0 chr9 73024965 73025077 -51051095 + RSINE1 SINE B4 45 158 -7 6 1142 961 161 106 40 chr9 73025117 73025344 -51050828 - ORR1B1 LTR MaLR -152 242 1 6 1142 360 272 68 79 chr9 73025559 73025700 -51050472 + LTR85a LTR Gypsy? 197 335 -367 6 1142 2545 71 149 5 chr9 73025700 73025891 -51050281 - BGLII LTR ERVK 0 421 182 6 1142 617 58 12 0 chr9 73025891 73025977 -51050195 + (TC)n Simple_repeat Simple_repeat 1 87 0 6 1142 2545 71 149 5 chr9 73025977 73026153 -51050019 - BGLII LTR ERVK -240 181 1 6 1142 360 272 68 79 chr9 73026153 73026263 -51049909 + LTR85a LTR Gypsy? 336 445 -257 6 1142 252 0 0 0 chr9 73027277 73027305 -51048867 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1142 395 117 141 13 chr9 73027347 73027425 -51048747 - ID_B1 SINE B4 -2 222 135 6 1142 286 223 51 41 chr9 73027425 73027445 -51048727 - B1_Mur2 SINE Alu -2 147 49 7 1142 262 338 35 70 chr9 73027593 73027736 -51048436 + MER2 DNA MER2_type 208 345 0 7 1142 248 259 0 0 chr9 73027745 73027803 -51048369 - MLT1B LTR MaLR -332 58 1 7 1142 413 235 97 82 chr9 73027962 73028157 -51048015 - B3A SINE B2 0 198 1 7 1142 2836 250 34 30 chr9 73028258 73028716 -51047456 - Lx9 LINE L1 -157 7487 7031 7 1142 2088 112 45 60 chr9 73028716 73029048 -51047124 - ORR1A2 LTR MaLR 0 327 1 7 1142 2836 250 34 30 chr9 73029048 73029345 -51046827 - Lx9 LINE L1 -614 7030 6729 7 1142 269 180 0 0 chr9 73029353 73029403 -51046769 + MER33 DNA MER1_type 259 308 -16 7 1142 789 230 44 53 chr9 73029407 73029632 -51046540 - ID_B1 SINE B4 -1 223 1 7 1142 816 143 0 0 chr9 73029889 73030015 -51046157 - B1_Mus2 SINE Alu -13 134 9 7 1142 438 184 24 95 chr9 73029903 73030029 -51046143 - MT2B LTR ERVL -323 278 162 7 1142 982 245 48 131 chr9 73030401 73030814 -51045358 - MTE2a LTR MaLR 0 379 1 8 1142 336 278 84 47 chr9 73030889 73031104 -51045068 + L1M5 LINE L1 3528 3750 -2396 8 1142 492 228 162 12 chr9 73031288 73031461 -51044711 + Tigger13a DNA MER2_type 157 355 -416 8 1142 583 261 0 0 chr9 73031523 73031642 -51044530 + PB1D9 SINE Alu 2 120 0 8 1142 273 57 0 0 chr9 73031657 73031692 -51044480 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 8 1142 278 296 0 14 chr9 73031975 73032047 -51044125 + CT-rich Low_complexity Low_complexity 5 75 0 8 1142 361 133 0 26 chr9 73032159 73032236 -51043936 + CT-rich Low_complexity Low_complexity 1 75 0 8 1142 1257 118 0 93 chr9 73032236 73032451 -51043721 - B2_Mm2 SINE B2 0 195 1 8 1142 1272 53 94 0 chr9 73032657 73032828 -51043344 - B2_Mm2 SINE B2 -7 188 2 8 1142 881 162 23 108 chr9 73032828 73033042 -51043130 - B3A SINE B2 -1 197 2 8 1142 348 294 73 59 chr9 73033046 73033737 -51042435 + L1M2 LINE L1 1850 2522 -4327 9 1142 238 327 9 35 chr9 73033911 73034025 -51042147 + L1_Rod LINE L1 2131 2241 -3606 9 1142 518 268 28 21 chr9 73034027 73034168 -51042004 - B3A SINE B2 -56 142 1 9 1142 1093 67 0 0 chr9 73034277 73034412 -51041760 + B1_Mus1 SINE Alu 2 136 -12 9 1142 186 43 0 0 chr9 73034413 73034436 -51041736 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1142 578 138 0 0 chr9 73034437 73034524 -51041648 - B3 SINE B2 -129 87 1 9 1142 389 103 0 14 chr9 73035822 73035891 -51040281 + (GA)n Simple_repeat Simple_repeat 1 68 0 9 1142 515 16 16 0 chr9 73035956 73036020 -51040152 + (TC)n Simple_repeat Simple_repeat 1 65 0 9 1142 525 131 0 0 chr9 73037331 73037415 -51038757 + (TC)n Simple_repeat Simple_repeat 2 85 0 9 1142 367 228 107 63 chr9 73037821 73037941 -51038231 - MER92B LTR ERV1 -324 312 185 9 1142 2509 145 5 8 chr9 73037941 73038336 -51037836 - ORR1B1 LTR MaLR 0 394 1 1 1142 367 228 107 63 chr9 73038336 73038374 -51037798 - MER92B LTR ERV1 -452 184 147 9 1142 416 207 61 0 chr9 73038386 73038468 -51037704 + RMER30 DNA MER1_type 5 91 -111 1 1142 843 272 134 42 chr9 73038479 73038912 -51037260 + Lx8 LINE L1 6915 7387 -86 1 1142 1123 180 80 0 chr9 73038982 73039182 -51036990 + B3 SINE B2 1 216 0 1 1142 24 32 0 0 chr9 73039294 73039325 -51036847 + AT_rich Low_complexity Low_complexity 1 31 0 1 1142 225 0 0 0 chr9 73039369 73039394 -51036778 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1142 1141 206 5 9 chr9 73039548 73039764 -51036408 - B3 SINE B2 -1 215 1 1 1142 22 0 0 0 chr9 73040740 73040762 -51035410 + AT_rich Low_complexity Low_complexity 1 22 0 1 1142 2819 57 3 0 chr9 73040762 73041114 -51035058 - L1Md_F2 LINE L1 -6 6576 6224 1 1142 301 271 0 0 chr9 73041593 73041663 -51034509 - ID4 SINE ID -12 71 2 1 1142 329 303 59 17 chr9 73041873 73042162 -51034010 - L1MC LINE L1 -2958 3188 2888 1 1142 269 314 59 0 chr9 73042482 73042584 -51033588 + MER5A DNA MER1_type 2 109 -80 1 1142 424 319 78 18 chr9 73042656 73042822 -51033350 + B3A SINE B2 1 176 -22 1 1142 510 70 0 0 chr9 73042828 73042899 -51033273 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1142 183 80 0 0 chr9 73043675 73043700 -51032472 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1 1142 390 245 70 35 chr9 73043710 73043824 -51032348 + PB1D7 SINE Alu 1 118 -2 1 1142 283 74 60 36 chr9 73043862 73043946 -51032226 + GA-rich Low_complexity Low_complexity 2 87 0 1 1142 276 264 75 21 chr9 73044058 73044151 -51032021 - MTEb LTR MaLR -94 285 182 1 1142 1273 229 45 104 chr9 73044155 73044624 -51031548 - L1MA5 LINE L1 -473 5827 5387 1 1142 241 241 17 0 chr9 73044637 73044695 -51031477 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1142 605 241 7 41 chr9 73044696 73044843 -51031329 - RSINE1 SINE B4 0 165 24 1 1142 293 132 78 13 chr9 73045010 73045087 -51031085 - Lx4A LINE L1 -2 7056 6975 1 1142 1449 55 16 16 chr9 73045102 73045288 -51030884 - B2_Mm2 SINE B2 -8 187 2 1 1142 1065 195 48 5 chr9 73045443 73045649 -51030523 + B3 SINE B2 2 216 0 1 1142 348 24 0 0 chr9 73045799 73045840 -51030332 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 1 1142 1026 195 25 20 chr9 73046060 73046259 -51029913 - B3 SINE B2 -15 201 2 1 1142 441 0 0 0 chr9 73046631 73046680 -51029492 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1142 5153 48 5 3 chr9 73047074 73047706 -51028466 - L1Md_F2 LINE L1 -2 6580 5948 1 1142 659 12 0 12 chr9 73047802 73047883 -51028289 + (TTTTC)n Simple_repeat Simple_repeat 3 82 0 1 1142 428 183 168 38 chr9 73047959 73048090 -51028082 - ORR1D2 LTR MaLR 0 370 223 1 1142 529 294 68 64 chr9 73048090 73048341 -51027831 - RLTR18B LTR ERVK 0 512 261 1 1142 555 250 120 26 chr9 73048525 73048759 -51027413 - RLTR18B LTR ERVK -232 280 25 1 1142 862 238 35 48 chr9 73048773 73049003 -51027169 - ORR1D2 LTR MaLR -142 228 2 1 1142 339 240 37 46 chr9 73049028 73049137 -51027035 + PB1D10 SINE Alu 10 117 0 1 1142 910 98 158 47 chr9 73049412 73049583 -51026589 - B2_Mm2 SINE B2 -5 190 1 1 1142 1212 68 6 0 chr9 73049613 73049776 -51026396 - B2_Mm2 SINE B2 -31 164 1 1 1142 257 322 23 0 chr9 73049860 73049947 -51026225 - B3A SINE B2 -109 89 1 1 1142 24 0 0 0 chr9 73049991 73050015 -51026157 + AT_rich Low_complexity Low_complexity 1 24 0 1 1142 230 159 23 0 chr9 73050050 73050094 -51026078 + L1_Rod LINE L1 4830 4874 -973 1 1142 308 293 0 12 chr9 73050285 73050368 -51025804 - B4A SINE B4 -129 163 82 1 1142 320 228 143 24 chr9 73050606 73050654 -51025518 - MLT1D LTR MaLR -305 200 145 1 1142 423 0 0 0 chr9 73050654 73050701 -51025471 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1142 320 228 143 24 chr9 73050701 73050778 -51025394 - MLT1D LTR MaLR -361 144 60 1 1142 315 0 0 0 chr9 73051319 73051354 -51024818 + (CAGT)n Simple_repeat Simple_repeat 2 36 0 1 1142 524 206 0 7 chr9 73051422 73051564 -51024608 + (TA)n Simple_repeat Simple_repeat 1 141 0 1 1142 788 219 30 25 chr9 73051573 73051774 -51024398 - B3 SINE B2 -13 203 2 1 1142 442 234 19 13 chr9 73052468 73052592 -51023580 - MLT1A1 LTR MaLR -16 392 252 1 1142 489 250 46 23 chr9 73053010 73053141 -51023031 - B1F SINE Alu -10 139 6 1 1142 1054 312 85 62 chr9 73054092 73054230 -51021942 - Lx9 LINE L1 -2 7471 7329 1 1142 396 0 0 0 chr9 73054230 73054274 -51021898 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1142 1210 271 41 49 chr9 73054274 73054523 -51021649 - Lx9 LINE L1 -188 7456 7212 1 1142 1086 95 0 13 chr9 73054523 73054673 -51021499 - B1_Mus1 SINE Alu 0 148 1 1 1142 1210 272 42 49 chr9 73054673 73054916 -51021256 - Lx9 LINE L1 -433 7211 6826 1 1142 189 0 0 0 chr9 73055498 73055519 -51020653 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1142 290 256 98 0 chr9 73055779 73055912 -51020260 + L1MC4 LINE L1 7769 7914 -128 1 1142 467 307 153 68 chr9 73056279 73056532 -51019640 - L2 LINE L2 -648 2771 2509 1 1142 630 288 82 0 chr9 73056532 73056702 -51019470 + B3A SINE B2 5 188 -10 1 1142 467 307 153 68 chr9 73056702 73057043 -51019129 - L2 LINE L2 -911 2508 2113 1 1142 651 201 94 63 chr9 73057043 73057234 -51018938 + B3A SINE B2 2 198 0 1 1142 467 307 153 68 chr9 73057234 73057324 -51018848 - L2 LINE L2 -1307 2112 2028 1 1142 298 266 20 50 chr9 73057443 73057542 -51018630 + PB1 SINE Alu 7 102 -25 1 1142 590 146 0 39 chr9 73057600 73057656 -51018516 + (CAAGC)n Simple_repeat Simple_repeat 2 55 0 1 1142 952 72 0 53 chr9 73057656 73057846 -51018326 + (CAACC)n Simple_repeat Simple_repeat 1 180 0 1 1142 590 146 0 39 chr9 73057846 73057967 -51018205 + (CAAGC)n Simple_repeat Simple_repeat 1 117 0 1 1142 465 248 66 84 chr9 73058107 73058274 -51017898 + RSINE1 SINE B4 2 165 0 1 1142 195 316 0 0 chr9 73058317 73058374 -51017798 - L2 LINE L2 -1378 2041 1985 1 1142 863 301 114 13 chr9 73058691 73059145 -51017027 + L1MA5 LINE L1 5777 6276 -24 1 1142 871 133 52 0 chr9 73059176 73059311 -51016861 + B1_Mus1 SINE Alu 1 142 -6 1 1142 265 227 133 0 chr9 73059434 73059509 -51016663 + Lx8 LINE L1 7119 7203 -270 1 1142 455 264 121 7 chr9 73059522 73059671 -51016501 + Lx8 LINE L1 7242 7407 -66 1 1142 769 249 131 12 chr9 73060287 73060607 -51015565 + MTE2b LTR MaLR 19 376 -3 1 1142 236 109 88 32 chr9 73060906 73060978 -51015194 - MIRc SINE MIR -88 174 103 1 1142 607 96 9 19 chr9 73061340 73061446 -51014726 + (TCTA)n Simple_repeat Simple_repeat 3 107 0 1 1142 24 0 0 0 chr9 73061663 73061687 -51014485 + AT_rich Low_complexity Low_complexity 1 24 0 1 1142 1298 86 31 21 chr9 73061704 73061895 -51014277 - B2_Mm1t SINE B2 0 193 1 1 1142 472 248 70 6 chr9 73061994 73062152 -51014020 + ORSL-2a DNA Tip100 103 270 -72 1 1142 2140 111 63 45 chr9 73062340 73062416 -51013756 + MTB_Mm LTR MaLR 1 96 -311 1 1142 4210 101 25 8 chr9 73062416 73063007 -51013165 - MT2B LTR ERVL 0 601 1 1 1142 2140 111 63 45 chr9 73063007 73063328 -51012844 + MTB_Mm LTR MaLR 97 405 -2 1 1142 536 306 4 2 chr9 73063369 73063549 -51012623 + L1MB8 LINE L1 5581 5761 -419 1 1142 548 101 11 0 chr9 73063549 73063638 -51012534 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1142 302 311 25 8 chr9 73063766 73063886 -51012286 + L1MB8 LINE L1 5997 6118 -60 1 1142 189 74 0 0 chr9 73063900 73063927 -51012245 + (TTTAG)n Simple_repeat Simple_repeat 3 29 0 1 1142 622 197 76 0 chr9 73063931 73064063 -51012109 - B1_Mus1 SINE Alu 0 148 7 1 1142 322 244 164 52 chr9 73064073 73064207 -51011965 - B1F SINE Alu 0 149 1 1 1142 480 62 0 0 chr9 73064232 73064296 -51011876 + (TATG)n Simple_repeat Simple_repeat 2 65 0 1 1142 510 219 130 0 chr9 73064305 73064428 -51011744 - B3A SINE B2 -45 153 15 1 1142 294 133 100 0 chr9 73064440 73064500 -51011672 + L1MB8 LINE L1 6112 6177 -1 1 1142 575 180 20 0 chr9 73064686 73064786 -51011386 - B1_Mur4 SINE Alu -48 102 1 1 1142 603 272 102 6 chr9 73065692 73065942 -51010230 - B4A SINE B4 -5 287 6 1 1142 1016 188 58 24 chr9 73066230 73066437 -51009735 - B3 SINE B2 -1 215 2 1 1142 1271 231 70 18 chr9 73066610 73066941 -51009231 + MTEa LTR MaLR 18 365 -14 1 1142 225 0 0 0 chr9 73067059 73067084 -51009088 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1142 1025 101 14 0 chr9 73067086 73067224 -51008948 - B1_Mus1 SINE Alu -6 142 3 1 1142 243 0 0 0 chr9 73067231 73067258 -51008914 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1142 308 239 0 15 chr9 73067295 73067363 -51008809 + ID4_ SINE ID 1 67 -16 1 1142 354 23 0 0 chr9 73068135 73068178 -51007994 + (TTA)n Simple_repeat Simple_repeat 1 43 0 1 1142 705 239 90 0 chr9 73068182 73068370 -51007802 - ID_B1 SINE B4 -18 206 2 1 1142 1375 122 312 11 chr9 73068690 73068972 -51007200 - ORR1B2 LTR MaLR 0 367 1 1 1142 386 139 12 81 chr9 73069006 73069092 -51007080 + ID4_ SINE ID 2 81 -2 1 1142 403 286 35 9 chr9 73069217 73069330 -51006842 + ID_B1 SINE B4 67 182 -42 1 1142 1431 299 38 84 chr9 73069354 73070018 -51006154 - Lx8 LINE L1 -28 7445 6813 1 1142 463 291 8 8 chr9 73070652 73070780 -51005392 + ID_B1 SINE B4 96 223 -1 1 1142 184 302 47 70 chr9 73071112 73071240 -51004932 + MIRc SINE MIR 20 144 -124 1 1142 313 278 14 87 chr9 73071821 73071959 -51004213 - MLT1A1 LTR MaLR -268 140 13 1 1142 30 93 0 0 chr9 73073464 73073550 -51002622 + AT_rich Low_complexity Low_complexity 1 86 0 1 1142 203 171 0 24 chr9 73073561 73073603 -51002569 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1142 294 292 0 14 chr9 73074200 73074273 -51001899 + B1F SINE Alu 68 139 -10 1 1142 288 77 0 0 chr9 73074277 73074316 -51001856 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 1 1142 456 19 0 0 chr9 73074390 73074443 -51001729 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 1 1142 1048 197 45 0 chr9 73074444 73074642 -51001530 - B3 SINE B2 -7 209 3 2 1142 470 241 92 28 chr9 73075356 73075497 -51000675 - RSINE1 SINE B4 0 165 16 2 1142 342 0 0 0 chr9 73076183 73076221 -50999951 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1142 594 234 29 0 chr9 73076256 73076393 -50999779 - RSINE1 SINE B4 -22 143 3 2 1142 200 314 70 0 chr9 73076416 73076502 -50999670 - L2c LINE L2 -33 3354 3263 2 1142 431 222 220 12 chr9 73076739 73076912 -50999260 - B3 SINE B2 -6 210 2 2 1142 520 270 61 6 chr9 73076913 73077077 -50999095 - MTEb LTR MaLR -200 179 7 2 1142 554 190 99 0 chr9 73077315 73077436 -50998736 - B1_Mur2 SINE Alu -5 144 12 2 1142 39898 59 1 23 chr9 73077457 73084339 -50991833 - L1Md_T LINE L1 0 6582 99 2 1142 24 32 0 0 chr9 73084340 73084371 -50991801 + AT_rich Low_complexity Low_complexity 1 31 0 2 1142 504 163 209 32 chr9 73084378 73084536 -50991636 + B2_Mm2 SINE B2 2 187 -8 2 1142 353 288 29 43 chr9 73085259 73085397 -50990775 + RSINE1 SINE B4 5 140 -25 2 1142 667 168 17 71 chr9 73085521 73085714 -50990458 + URR1A DNA MER1_type 1 155 -71 2 1142 647 79 0 0 chr9 73085714 73085803 -50990369 + RMER1A Other Other 930 1018 -12 2 1142 517 98 12 0 chr9 73085806 73085888 -50990284 + URR1A DNA MER1_type 143 225 -1 2 1142 1106 195 262 40 chr9 73086457 73086885 -50989287 + MT2B LTR ERVL 1 523 -78 2 1142 227 128 0 60 chr9 73086897 73086934 -50989238 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 2 1142 5667 121 37 48 chr9 73086934 73087898 -50988274 - RMER17B LTR ERVK -4 954 1 2 1142 227 128 0 60 chr9 73087898 73087910 -50988262 + (CCTA)n Simple_repeat Simple_repeat 1 12 0 2 1142 1202 222 85 15 chr9 73087971 73088301 -50987871 - ORR1E LTR MaLR -4 355 3 2 1142 1074 232 71 32 chr9 73089164 73089444 -50986728 + B4 SINE B4 2 292 0 2 1142 576 42 0 0 chr9 73089469 73089540 -50986632 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 1142 834 290 28 9 chr9 73091154 73091366 -50984806 + B3 SINE B2 1 216 0 2 1142 816 168 0 0 chr9 73091792 73091941 -50984231 + CT-rich Low_complexity Low_complexity 1 149 0 2 1142 348 127 0 0 chr9 73091946 73092001 -50984171 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 2 1142 1164 237 105 7 chr9 73092228 73092534 -50983638 - MTD LTR MaLR 0 419 84 2 1142 414 188 16 26 chr9 73092598 73092748 -50983424 - L1MB3 LINE L1 -386 5926 5785 2 1142 509 246 139 0 chr9 73092750 73092872 -50983300 - B3A SINE B2 -59 139 1 2 1142 702 89 0 0 chr9 73093679 73093791 -50982381 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 1142 272 252 89 155 chr9 73094531 73094875 -50981297 - MLT1B LTR MaLR -7 460 65 2 1142 1369 227 51 14 chr9 73094875 73095228 -50980944 + MTEa LTR MaLR 3 368 -11 2 1142 1219 120 0 0 chr9 73095533 73095725 -50980447 - ORR1B1 LTR MaLR 0 394 203 2 1142 22 0 0 0 chr9 73096391 73096413 -50979759 + AT_rich Low_complexity Low_complexity 1 22 0 2 1142 464 62 0 0 chr9 73096420 73096485 -50979687 + B2_Mm2 SINE B2 2 66 -129 2 1142 1077 276 33 20 chr9 73096475 73096778 -50979394 - ORR1D2 LTR MaLR -63 307 1 2 1142 919 202 0 11 chr9 73096778 73096958 -50979214 - B3A SINE B2 -17 181 4 2 1142 195 0 0 154 chr9 73097691 73097827 -50978345 + (GTCTG)n Simple_repeat Simple_repeat 1 115 0 2 1142 22 0 0 0 chr9 73098089 73098111 -50978061 + AT_rich Low_complexity Low_complexity 1 22 0 2 1142 353 331 172 0 chr9 73098437 73098582 -50977590 - B4A SINE B4 0 292 123 2 1142 1166 134 39 0 chr9 73099081 73099260 -50976912 + B2_Mm2 SINE B2 2 187 -8 2 1142 2804 66 28 42 chr9 73099822 73100092 -50976080 - RMER16 LTR ERVK 0 533 268 2 1142 7331 60 4 1 chr9 73100092 73100999 -50975173 + L1Md_F2 LINE L1 5661 6570 -12 2 1142 2804 79 26 36 chr9 73100999 73101180 -50974992 - RMER16 LTR ERVK -266 267 1 2 1142 471 18 0 0 chr9 73101290 73101346 -50974826 + (TCC)n Simple_repeat Simple_repeat 1 56 0 2 1142 308 330 28 0 chr9 73101387 73101496 -50974676 + L1_Mur3 LINE L1 703 814 -6898 2 1142 541 242 47 26 chr9 73101720 73101911 -50974261 + L1_Mur3 LINE L1 821 1015 -6697 2 1142 306 163 0 0 chr9 73101918 73101967 -50974205 - B4A SINE B4 -219 73 25 2 1142 300 256 11 11 chr9 73102187 73102274 -50973898 + L1M3 LINE L1 5213 5299 -841 2 1142 991 244 62 0 chr9 73103016 73103274 -50972898 + B4A SINE B4 1 274 -18 2 1142 333 0 0 0 chr9 73103291 73103328 -50972844 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1142 268 275 0 14 chr9 73103337 73103407 -50972765 + GA-rich Low_complexity Low_complexity 3 71 0 2 1142 1396 290 43 22 chr9 73103578 73104118 -50972054 - MER67C LTR ERV1 -3 708 158 2 1142 848 153 0 6 chr9 73104140 73104311 -50971861 + (TA)n Simple_repeat Simple_repeat 2 171 0 2 1142 926 245 14 14 chr9 73104376 73104587 -50971585 - ID_B1 SINE B4 -9 215 5 2 1142 858 217 0 0 chr9 73104993 73105154 -50971018 - B3 SINE B2 -52 164 4 2 1142 299 113 63 10 chr9 73105689 73105758 -50970414 + B1_Mur4 SINE Alu 37 140 -10 2 1142 249 33 0 0 chr9 73105758 73105788 -50970384 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1142 212 79 53 0 chr9 73106946 73106984 -50969188 + (CTAA)n Simple_repeat Simple_repeat 3 42 0 2 1142 605 264 95 19 chr9 73107641 73107943 -50968229 - L1MC3 LINE L1 -376 7666 7221 2 1142 634 211 107 11 chr9 73107964 73108151 -50968021 - L1MC3 LINE L1 -697 7088 6884 2 1142 206 171 38 50 chr9 73108164 73108244 -50967928 + (TATG)n Simple_repeat Simple_repeat 3 81 0 2 1142 429 213 17 17 chr9 73108265 73108437 -50967735 + (TATG)n Simple_repeat Simple_repeat 1 172 0 2 1142 484 150 0 0 chr9 73108493 73108573 -50967599 - L1MC3 LINE L1 -937 6848 6769 2 1142 192 111 0 0 chr9 73110249 73110285 -50965887 + (C)n Simple_repeat Simple_repeat 1 36 0 2 1142 22 0 0 0 chr9 73110952 73110974 -50965198 + AT_rich Low_complexity Low_complexity 1 22 0 2 1142 315 0 0 0 chr9 73111046 73111081 -50965091 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1142 3453 18 8 0 chr9 73111081 73111471 -50964701 + MTA_Mm LTR MaLR 4 396 0 2 1142 252 250 117 0 chr9 73111472 73111532 -50964640 - B3 SINE B2 -34 182 116 2 1142 282 226 48 0 chr9 73111570 73111632 -50964540 + RMER30 DNA MER1_type 5 69 -133 2 1142 209 186 33 17 chr9 73111650 73111681 -50964491 + A-rich Low_complexity Low_complexity 4 36 0 2 1142 225 0 0 0 chr9 73111681 73111706 -50964466 + (CCAA)n Simple_repeat Simple_repeat 3 27 0 2 1142 209 186 33 17 chr9 73111706 73111734 -50964438 + A-rich Low_complexity Low_complexity 37 63 0 2 1142 1200 140 62 5 chr9 73113117 73113325 -50962847 - MTC LTR MaLR -8 413 194 2 1142 398 209 11 11 chr9 73113336 73113423 -50962749 - MTC LTR MaLR -334 87 1 2 1142 429 109 0 0 chr9 73114050 73114114 -50962058 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 2 1142 785 150 0 0 chr9 73114142 73114262 -50961910 - B1_Mur3 SINE Alu -8 141 22 2 1142 839 228 85 10 chr9 73115273 73115472 -50960700 + ID_B1 SINE B4 3 216 -8 2 1142 204 67 0 0 chr9 73115480 73115510 -50960662 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2 1142 858 157 6 59 chr9 73116248 73116417 -50959755 - URR1B DNA MER1_type -59 166 7 2 1142 567 267 58 0 chr9 73116629 73116801 -50959371 + B3A SINE B2 1 182 -16 2 1142 588 236 0 0 chr9 73116801 73116979 -50959193 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1142 1176 214 176 6 chr9 73117423 73117780 -50958392 + MTD LTR MaLR 2 419 0 2 1142 994 24 152 0 chr9 73118632 73118757 -50957415 - B1_Mm SINE Alu -3 144 1 2 1142 336 24 0 0 chr9 73118787 73118828 -50957344 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1142 369 0 0 0 chr9 73118828 73118868 -50957304 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1142 207 0 0 0 chr9 73118868 73118891 -50957281 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1142 736 231 0 0 chr9 73118902 73119049 -50957123 - B3 SINE B2 -69 147 1 2 1142 504 285 20 20 chr9 73119069 73119266 -50956906 - L1M2 LINE L1 -1158 4985 4789 2 1142 294 312 0 9 chr9 73119265 73119375 -50956797 + L1M2 LINE L1 4441 4549 -1594 2 1142 228 98 16 47 chr9 73119766 73119830 -50956342 + A-rich Low_complexity Low_complexity 6 67 0 2 1142 213 39 0 0 chr9 73119905 73119931 -50956241 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1142 234 62 0 0 chr9 73120178 73120210 -50955962 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1142 683 264 23 11 chr9 73120224 73120400 -50955772 - B3 SINE B2 -2 214 37 2 1142 363 204 20 61 chr9 73120815 73120914 -50955258 + B4 SINE B4 5 99 -193 2 1142 289 194 86 0 chr9 73120915 73121008 -50955164 + (CATG)n Simple_repeat Simple_repeat 3 103 0 2 1142 604 305 40 60 chr9 73121008 73121207 -50954965 + B4 SINE B4 98 292 0 2 1142 691 205 184 5 chr9 73122388 73122594 -50953578 + MTC LTR MaLR 179 421 0 2 1142 554 301 105 5 chr9 73122821 73123031 -50953141 - B4A SINE B4 -61 231 1 2 1142 272 27 27 0 chr9 73123220 73123257 -50952915 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1142 379 273 78 8 chr9 73123257 73123386 -50952786 - B3A SINE B2 -20 178 41 2 1142 622 158 9 5 chr9 73124794 73125024 -50951148 + (TATG)n Simple_repeat Simple_repeat 1 231 0 2 1142 1120 204 20 0 chr9 73125306 73125507 -50950665 - B3 SINE B2 -11 205 1 2 1142 714 271 56 14 chr9 73125569 73125782 -50950390 + ID_B1 SINE B4 1 222 -2 2 1142 617 261 65 10 chr9 73126166 73126367 -50949805 + ID_B1 SINE B4 1 212 -12 2 1142 187 189 19 19 chr9 73126372 73126426 -50949746 + CT-rich Low_complexity Low_complexity 2 55 0 2 1142 405 0 0 0 chr9 73126463 73126508 -50949664 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1142 760 241 60 0 chr9 73126570 73126769 -50949403 - B3 SINE B2 -5 211 1 2 1142 447 271 0 18 chr9 73126836 73126945 -50949227 - PB1D10 SINE Alu -1 116 10 3 1142 374 244 0 12 chr9 73127291 73127374 -50948798 + RMER30 DNA MER1_type 2 83 -119 3 1142 806 176 0 33 chr9 73128398 73128551 -50947621 - B1_Mur2 SINE Alu -1 148 1 3 1142 414 53 0 0 chr9 73128688 73128745 -50947427 + (CAA)n Simple_repeat Simple_repeat 2 58 0 3 1142 311 45 0 22 chr9 73128745 73128791 -50947381 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3 1142 250 298 89 133 chr9 73128845 73129093 -50947079 - RMER1C Other Other -3 1339 1103 3 1142 1776 218 117 5 chr9 73128872 73129315 -50946857 - Lx8 LINE L1 -5 7468 6976 3 1142 441 0 0 0 chr9 73130183 73130232 -50945940 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1142 635 273 75 0 chr9 73130863 73131024 -50945148 + B3A SINE B2 1 173 -25 3 1142 285 29 0 0 chr9 73131025 73131059 -50945113 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1142 455 262 19 0 chr9 73131105 73131212 -50944960 - PB1D10 SINE Alu -8 109 1 3 1142 35716 55 1 1 chr9 73131795 73136786 -50939386 + L1Md_F3 LINE L1 641 5586 -297 3 1142 8264 41 5 3 chr9 73136786 73137780 -50938392 + L1Md_F3 LINE L1 5587 6582 -2 3 142 667 267 189 82 chr9 73137987 73138537 -50937635 - RLTR18 LTR ERVK -3 613 5 3 1143 1288 202 145 3 chr9 73138550 73138867 -50937305 - MTD LTR MaLR -57 362 1 3 1143 27 29 0 0 chr9 73139140 73139174 -50936998 + AT_rich Low_complexity Low_complexity 1 34 0 3 1143 590 272 70 20 chr9 73139174 73139373 -50936799 - B3 SINE B2 0 216 8 3 1143 23 0 0 0 chr9 73139373 73139396 -50936776 + AT_rich Low_complexity Low_complexity 1 23 0 3 1143 379 301 15 7 chr9 73139521 73139658 -50936514 - MIR SINE MIR -111 151 14 3 1143 734 196 8 0 chr9 73140153 73140286 -50935886 - B1_Mur1 SINE Alu -13 136 3 3 1143 988 189 10 35 chr9 73141778 73141981 -50934191 + B3 SINE B2 5 202 -14 3 1143 216 0 0 0 chr9 73142433 73142457 -50933715 + (TATG)n Simple_repeat Simple_repeat 1 24 0 3 1143 318 26 0 0 chr9 73142458 73142497 -50933675 + (CAAT)n Simple_repeat Simple_repeat 3 41 0 3 1143 221 189 0 0 chr9 73142544 73142581 -50933591 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1143 985 247 28 49 chr9 73142581 73142866 -50933306 - Lx9 LINE L1 -49 7595 7317 3 1143 463 143 39 0 chr9 73142854 73142931 -50933241 - Lx9 LINE L1 -586 7058 6979 3 1143 854 307 18 106 chr9 73142999 73143433 -50932739 + MER67D LTR ERV1 20 415 -99 3 1143 692 236 47 0 chr9 73143512 73143660 -50932512 + B3A SINE B2 3 157 -41 3 1143 188 88 59 0 chr9 73143667 73143701 -50932471 + (CATG)n Simple_repeat Simple_repeat 4 39 0 3 1143 198 0 0 0 chr9 73143721 73143743 -50932429 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1143 286 266 106 0 chr9 73143752 73143846 -50932326 + PB1D10 SINE Alu 1 104 -13 3 1143 2817 22 2 127 chr9 73144129 73144548 -50931624 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1143 28924 31 1 2 chr9 73144548 73147825 -50928347 - IAPEz-int LTR ERVK 0 6481 3210 3 1143 7569 105 94 20 chr9 73147824 73149041 -50927131 - IAPEz-int LTR ERVK -5168 1313 8 3 1143 2613 11 0 93 chr9 73149041 73149428 -50926744 - IAPLTR1_Mm LTR ERVK 0 367 17 3 1143 304 318 36 0 chr9 73149649 73149759 -50926413 - PB1D10 SINE Alu -1 116 3 3 1143 342 0 0 0 chr9 73151386 73151424 -50924748 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1143 925 239 19 14 chr9 73151786 73152002 -50924170 - ID_B1 SINE B4 -4 220 4 3 1143 1487 17 91 0 chr9 73152002 73152178 -50923994 + B2_Mm1a SINE B2 2 193 0 3 1143 496 250 60 45 chr9 73152925 73153107 -50923065 + B3A SINE B2 2 198 0 3 1143 1516 191 92 3 chr9 73153157 73153473 -50922699 - Lx5 LINE L1 0 7050 6707 3 1143 331 259 12 12 chr9 73153697 73153779 -50922393 + ID4 SINE ID 1 82 -1 3 1143 887 152 194 17 chr9 73153829 73154009 -50922163 + B3 SINE B2 1 212 -4 3 1143 32638 96 14 14 chr9 73154017 73160203 -50915969 + L1Md_F2 LINE L1 217 5586 -297 3 1143 7386 79 11 3 chr9 73160203 73161188 -50914984 + L1Md_F2 LINE L1 5587 6579 -3 3 1143 528 206 0 0 chr9 73161205 73161302 -50914870 + ID_B1 SINE B4 122 218 -6 3 1143 26 50 0 0 chr9 73161891 73161931 -50914241 + AT_rich Low_complexity Low_complexity 1 40 0 3 1143 270 0 0 0 chr9 73161931 73161961 -50914211 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1143 278 240 45 38 chr9 73161967 73162090 -50914082 + ORR1E LTR MaLR 3 127 -238 3 1143 1320 170 9 0 chr9 73163277 73163501 -50912671 + URR1A DNA MER1_type 1 226 0 3 1143 387 226 12 74 chr9 73164174 73164279 -50911893 - PB1D10 SINE Alu -18 109 1 3 1143 195 139 0 0 chr9 73164973 73165009 -50911163 + (TCC)n Simple_repeat Simple_repeat 1 36 0 3 1143 645 291 0 17 chr9 73167056 73167231 -50908941 + B3A SINE B2 1 172 -26 3 1143 231 314 0 0 chr9 73167966 73168036 -50908136 + ID4_ SINE ID 3 72 -11 3 1143 4079 242 35 62 chr9 73168731 73169620 -50906552 + Lx4B LINE L1 5618 6476 -582 3 1143 222 37 0 0 chr9 73169620 73169647 -50906525 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 3 1143 4079 242 24 24 chr9 73169647 73170249 -50905923 + Lx4B LINE L1 6477 7428 -32 3 1143 225 0 0 0 chr9 73170249 73170274 -50905898 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3 1143 1340 73 0 30 chr9 73170614 73170813 -50905359 - L1_Mus2 LINE L1 0 6566 6374 3 1143 318 287 125 42 chr9 73170972 73171212 -50904960 - L1MEc LINE L1 -3016 3303 3044 3 1143 233 286 132 41 chr9 73171226 73171492 -50904680 - L1MEc LINE L1 -4206 2194 1905 3 1143 400 293 15 54 chr9 73171854 73171984 -50904188 - RSINE1 SINE B4 0 165 41 3 1143 906 152 7 14 chr9 73172090 73172237 -50903935 - B1_Mur4 SINE Alu 0 150 5 3 1143 200 158 51 34 chr9 73172486 73172545 -50903627 + (TCTG)n Simple_repeat Simple_repeat 2 61 0 3 1143 1585 50 0 0 chr9 73173066 73173265 -50902907 + L1_Mus2 LINE L1 6367 6565 -1 3 1143 329 296 0 22 chr9 73173352 73173442 -50902730 + ORR1E LTR MaLR 1 88 -271 3 1143 484 220 181 8 chr9 73174281 73174317 -50901855 - RMER10A LTR ERVL -286 156 120 3 1143 324 0 0 0 chr9 73174317 73174353 -50901819 + (CAGC)n Simple_repeat Simple_repeat 3 38 0 3 1143 484 220 181 8 chr9 73174353 73174449 -50901723 - RMER10A LTR ERVL -323 119 2 3 1143 214 182 23 0 chr9 73174620 73174664 -50901508 + (GGGTG)n Simple_repeat Simple_repeat 2 46 0 3 1143 250 213 0 0 chr9 73175568 73175615 -50900557 + MTE2b LTR MaLR 1 47 -332 3 1143 809 229 158 88 chr9 73175831 73176185 -50899987 - MTE2a LTR MaLR 0 379 1 3 1143 622 219 36 0 chr9 73177370 73177507 -50898665 - B3 SINE B2 -69 147 6 3 1143 653 250 136 48 chr9 73178849 73179009 -50897163 - ID_B1 SINE B4 0 224 37 3 1143 1861 142 135 9 chr9 73179009 73179335 -50896837 + ORR1B2 LTR MaLR 1 367 0 3 1143 653 250 136 48 chr9 73179335 73179380 -50896792 - ID SINE ID -188 36 1 3 1143 21 36 0 0 chr9 73180803 73180831 -50895341 + AT_rich Low_complexity Low_complexity 1 28 0 3 1143 432 0 0 0 chr9 73180836 73180884 -50895288 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1143 1042 301 117 40 chr9 73180965 73181067 -50895105 - L1MC4 LINE L1 -371 7671 7578 3 1143 186 43 0 0 chr9 73181067 73181090 -50895082 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1143 1042 301 117 40 chr9 73181090 73181823 -50894349 - L1MC4 LINE L1 -465 7577 6772 3 1143 1125 278 48 40 chr9 73181869 73182301 -50893871 - L1M2 LINE L1 -1317 4826 4394 3 1143 3043 87 14 2 chr9 73182301 73182717 -50893455 + BGLII LTR ERVK 1 421 0 3 1143 1125 270 50 39 chr9 73182717 73182920 -50893252 - L1M2 LINE L1 -1747 4393 4191 3 1143 1579 168 62 11 chr9 73182931 73183305 -50892867 - RMER17C LTR ERVK -17 393 1 3 1143 236 290 144 32 chr9 73183310 73183498 -50892674 - L1M2 LINE L1 -1963 4180 3971 3 1143 421 236 17 60 chr9 73183558 73183675 -50892497 - B3A SINE B2 -85 113 2 3 1143 702 35 0 0 chr9 73183731 73183816 -50892356 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 1143 1197 244 51 60 chr9 73183818 73184396 -50891776 - L1M2 LINE L1 -2245 3895 3291 3 1143 1027 186 65 0 chr9 73184454 73184653 -50891519 + B3 SINE B2 5 216 0 3 1143 193 122 19 58 chr9 73184834 73184886 -50891286 + CT-rich Low_complexity Low_complexity 3 52 0 3 1143 4238 40 84 2 chr9 73185817 73186338 -50889834 - LTRIS2 LTR ERV1 0 564 1 3 1143 444 143 0 28 chr9 73186472 73186544 -50889628 - MurERV4-int LTR ERVK -82 5178 5109 3 1143 11879 154 86 29 chr9 73186538 73189361 -50886811 + RMER16-int LTR ERVK 1566 6198 -1208 3 1143 503 223 110 55 chr9 73189908 73190126 -50886046 + RLTR9A LTR ERVK 139 368 0 3 1143 21979 162 16 98 chr9 73190128 73193272 -50882900 - Lx4B LINE L1 -830 6228 3123 3 1143 829 73 0 0 chr9 73193272 73193382 -50882790 - B1_Mm SINE Alu -37 110 1 3 1143 262 240 24 24 chr9 73193275 73193399 -50882773 - ORR1B1-int LTR MaLR -755 754 631 3 1143 21979 162 16 98 chr9 73193399 73193510 -50882662 - Lx4B LINE L1 -3936 3122 3014 3 1143 2593 44 0 0 chr9 73193510 73193848 -50882324 - ORR1A1 LTR MaLR -8 338 1 3 1143 21979 162 16 98 chr9 73193848 73194108 -50882064 - Lx4B LINE L1 -830 3013 2754 3 1143 3039 74 42 0 chr9 73194108 73194512 -50881660 + BGLII LTR ERVK 1 421 0 3 1143 21979 165 18 108 chr9 73194512 73195195 -50880977 - Lx4B LINE L1 -3133 2753 2065 3 1143 294 73 0 0 chr9 73195195 73195236 -50880936 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1143 21979 166 18 106 chr9 73195236 73196109 -50880063 - Lx4B LINE L1 -3822 2064 1189 3 1143 1538 22 22 6 chr9 73196109 73196292 -50879880 - B2_Mm1a SINE B2 -7 186 1 3 1143 2110 182 36 31 chr9 73196292 73196604 -50879568 - Lx4B LINE L1 -5796 1188 867 3 1143 2178 160 0 6 chr9 73196869 73197220 -50878952 - MurERV4-int LTR ERVK -428 4832 4484 3 1143 1893 175 31 31 chr9 73198280 73198664 -50877508 + ORR1C2 LTR MaLR 1 384 0 3 1143 910 219 29 24 chr9 73200145 73200355 -50875817 - B3 SINE B2 -5 211 1 3 1143 568 297 76 9 chr9 73200356 73200567 -50875605 - B4 SINE B4 -66 226 2 3 1143 5663 19 0 0 chr9 73200637 73201273 -50874899 + L1Md_A LINE L1 5947 6582 0 3 1143 1344 209 144 9 chr9 73201949 73202297 -50873875 - MTD LTR MaLR -13 406 12 3 1143 584 240 8 8 chr9 73203543 73203665 -50872507 + B3 SINE B2 1 122 -94 3 1143 180 306 61 10 chr9 73203741 73203840 -50872332 - MIRb SINE MIR -39 229 126 3 1143 292 266 17 17 chr9 73206577 73206716 -50869456 - MERVK26-int LTR ERVK -2070 4849 4687 3 1143 289 281 12 0 chr9 73208440 73208522 -50867650 + MLT1B LTR MaLR 36 118 -272 3 1143 261 185 0 0 chr9 73208964 73209029 -50867143 + T-rich Low_complexity Low_complexity 1 65 0 3 1143 22 0 0 0 chr9 73209872 73209894 -50866278 + AT_rich Low_complexity Low_complexity 1 22 0 3 1143 3670 105 60 94 chr9 73210106 73210883 -50865289 - RMER17A LTR ERVK 0 751 1 3 1143 217 214 0 0 chr9 73211198 73211240 -50864932 + GA-rich Low_complexity Low_complexity 3 44 0 4 1143 1183 35 21 0 chr9 73211471 73211614 -50864558 - B1_Mm SINE Alu 0 147 2 4 1143 704 111 0 0 chr9 73212289 73212388 -50863784 - B3 SINE B2 -117 99 1 4 1143 768 198 74 30 chr9 73213357 73213560 -50862612 - B3 SINE B2 0 216 5 4 1143 189 94 0 0 chr9 73214833 73214865 -50861307 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1143 257 70 23 0 chr9 73214877 73214917 -50861255 - B1_Mus2 SINE Alu 0 147 107 4 1143 1373 187 54 6 chr9 73214917 73215250 -50860922 + RMER17C LTR ERVK 1 349 -61 4 1143 630 265 82 6 chr9 73216054 73216236 -50859936 - B4A SINE B4 -1 291 96 4 1143 513 32 0 0 chr9 73216237 73216300 -50859872 + (TCC)n Simple_repeat Simple_repeat 3 65 0 4 1143 363 265 45 9 chr9 73216338 73216493 -50859679 - Lx6 LINE L1 -37 7659 7521 4 1143 1330 248 42 10 chr9 73216486 73216795 -50859377 - Lx6 LINE L1 -135 7325 7007 4 1143 4198 32 57 6 chr9 73216795 73217305 -50858867 - L1Md_F3 LINE L1 0 6584 6049 4 1143 4010 47 0 0 chr9 73217305 73217790 -50858382 + L1_Mm LINE L1 3330 3814 -2069 4 1143 791 262 6 76 chr9 73217791 73218155 -50858017 - Lx6 LINE L1 -566 6894 6455 4 1143 21 0 0 0 chr9 73218841 73218862 -50857310 + AT_rich Low_complexity Low_complexity 1 21 0 4 1143 4997 138 63 25 chr9 73219344 73220207 -50855965 + Lx4A LINE L1 6164 7058 0 4 1143 195 333 0 0 chr9 73220252 73220312 -50855860 + L2 LINE L2 2604 2663 -756 4 1143 228 299 83 25 chr9 73220336 73220456 -50855716 + MIRb SINE MIR 84 210 -58 4 1143 1946 179 27 24 chr9 73220858 73221230 -50854942 + ORR1D1 LTR MaLR 1 373 -1 4 1143 188 158 26 26 chr9 73221435 73221474 -50854698 - MIRm SINE MIR -35 241 203 4 1143 328 303 19 22 chr9 73221714 73221861 -50854311 - L1MD3 LINE L1 -66 7929 7799 4 1143 1885 172 105 8 chr9 73222439 73222821 -50853351 + MTD LTR MaLR 1 419 0 4 1143 292 274 27 0 chr9 73225976 73226049 -50850123 + RMER30 DNA MER1_type 4 78 -124 4 1143 644 328 53 20 chr9 73226826 73227168 -50849004 + ORR1E LTR MaLR 3 355 -4 4 1143 682 246 161 20 chr9 73227377 73227626 -50848546 - B4A SINE B4 -1 291 8 4 1143 26 0 0 0 chr9 73228324 73228350 -50847822 + AT_rich Low_complexity Low_complexity 1 26 0 4 1143 2675 172 15 39 chr9 73229285 73229824 -50846348 - RLTR11A2 LTR ERVK 0 527 2 4 1143 1133 201 118 11 chr9 73230071 73230333 -50845839 + B4 SINE B4 3 292 0 4 1143 256 304 0 52 chr9 73230730 73230742 -50845430 + polypyrimidine Low_complexity Low_complexity 83 93 0 4 1143 1990 104 67 61 chr9 73230742 73231069 -50845103 + ORR1A4 LTR MaLR 1 329 0 4 1143 256 304 0 52 chr9 73231069 73231153 -50845019 + polypyrimidine Low_complexity Low_complexity 2 82 0 4 1143 839 192 0 6 chr9 73231153 73231331 -50844841 + CT-rich Low_complexity Low_complexity 1 177 0 4 1143 22 0 0 0 chr9 73232024 73232046 -50844126 + AT_rich Low_complexity Low_complexity 1 22 0 4 1143 643 243 38 60 chr9 73232382 73232566 -50843606 + B3A SINE B2 1 180 -36 4 1143 1568 47 0 0 chr9 73232917 73233109 -50843063 + L1_Mus1 LINE L1 6376 6567 0 4 1143 376 194 115 10 chr9 73233222 73233326 -50842846 + MLT2B1 LTR ERVL 10 124 -396 4 1143 2015 93 57 66 chr9 73233398 73233730 -50842442 + ORR1A4 LTR MaLR 1 329 0 4 1143 1074 160 59 41 chr9 73233755 73233976 -50842196 + URR1B DNA MER1_type 1 225 0 4 1143 247 223 39 53 chr9 73234006 73234085 -50842087 + MLT2B1 LTR ERVL 328 440 -122 4 1143 189 195 0 0 chr9 73234126 73234167 -50842005 + T-rich Low_complexity Low_complexity 1 41 0 4 1143 844 164 0 0 chr9 73234175 73234315 -50841857 - B1_Mus1 SINE Alu -6 142 3 4 1143 248 233 44 11 chr9 73234352 73234443 -50841729 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 4 1143 3528 25 2 0 chr9 73234870 73235265 -50840907 - MTA_Mm LTR MaLR 0 396 1 4 1143 1108 237 40 37 chr9 73235506 73235830 -50840342 + Lx8 LINE L1 7139 7463 -10 4 1143 291 291 65 16 chr9 73235896 73236081 -50840091 + L1MA6 LINE L1 6101 6294 -6 4 1143 742 168 34 20 chr9 73236230 73236376 -50839796 + B1_Mur4 SINE Alu 2 149 -1 4 1143 435 179 0 12 chr9 73236994 73237079 -50839093 + B3A SINE B2 1 84 -114 4 1143 1229 46 23 0 chr9 73237320 73237493 -50838679 + (TCC)n Simple_repeat Simple_repeat 1 177 0 4 1143 1130 59 0 0 chr9 73237493 73237629 -50838543 - B1_Mus1 SINE Alu -12 136 1 4 1143 23 68 0 0 chr9 73238120 73238164 -50838008 + AT_rich Low_complexity Low_complexity 1 44 0 4 1143 22 0 0 0 chr9 73238195 73238217 -50837955 + AT_rich Low_complexity Low_complexity 1 22 0 4 1143 299 205 0 25 chr9 73238246 73238326 -50837846 + (TATG)n Simple_repeat Simple_repeat 4 81 0 4 1143 900 230 29 14 chr9 73238755 73238962 -50837210 - ID_B1 SINE B4 0 224 15 4 1143 23 0 0 0 chr9 73239082 73239105 -50837067 + AT_rich Low_complexity Low_complexity 1 23 0 4 1143 21 57 0 0 chr9 73239379 73239414 -50836758 + AT_rich Low_complexity Low_complexity 1 35 0 4 1143 214 214 107 0 chr9 73240448 73240504 -50835668 - MER5B DNA MER1_type -1 177 116 4 1143 225 252 36 27 chr9 73240830 73240940 -50835232 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 4 1143 2460 152 30 99 chr9 73241005 73241642 -50834530 - RMER6A LTR ERVK 0 756 164 4 1143 295 51 0 0 chr9 73241658 73241697 -50834475 - RMER6A LTR ERVK -681 39 1 4 1143 282 56 0 0 chr9 73241699 73241735 -50834437 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 4 1143 24 67 0 0 chr9 73241894 73241939 -50834233 + AT_rich Low_complexity Low_complexity 1 45 0 4 1143 230 270 13 13 chr9 73242078 73242153 -50834019 + (TATATG)n Simple_repeat Simple_repeat 1 75 0 4 1143 231 36 0 0 chr9 73242153 73242181 -50833991 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1143 651 263 44 39 chr9 73242187 73242393 -50833779 - ID_B1 SINE B4 -16 208 2 4 1143 632 270 75 20 chr9 73242781 73242817 -50833355 + B3 SINE B2 6 45 -171 4 1143 1174 70 0 0 chr9 73242817 73242960 -50833212 + B1_Mus1 SINE Alu 2 144 -4 4 1143 632 270 75 20 chr9 73242960 73243123 -50833049 + B3 SINE B2 46 215 -1 4 1143 39326 7 0 1 chr9 73244522 73250310 -50825862 + L1Md_A LINE L1 1 5586 -297 4 1143 9173 4 0 0 chr9 73250310 73251306 -50824866 + L1Md_A LINE L1 5587 6582 0 4 1143 1032 226 25 0 chr9 73251804 73252003 -50824169 - B3 SINE B2 -11 205 2 4 1143 406 264 80 45 chr9 73252113 73252439 -50823733 - RLTR12B LTR ERVK -250 278 1 4 1143 477 138 0 0 chr9 73252555 73252635 -50823537 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1143 324 47 0 0 chr9 73252746 73252789 -50823383 - ORR1A2 LTR MaLR 0 326 284 4 1143 1948 107 90 7 chr9 73252824 73253125 -50823047 - Lx LINE L1 -10 6644 6319 4 1143 2903 33 0 3 chr9 73253125 73253463 -50822709 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1143 56232 21 20 7 chr9 73253463 73259852 -50816320 + IAPEz-int LTR ERVK 8 6481 0 4 1143 2903 33 0 3 chr9 73259852 73260190 -50815982 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1143 230 128 0 0 chr9 73260190 73260229 -50815943 - L1_Mus4 LINE L1 -312 6324 6286 4 1143 3147 62 65 0 chr9 73260255 73260656 -50815516 - L1_Mus1 LINE L1 0 6567 6141 4 1143 1894 78 3 66 chr9 73260656 73260960 -50815212 - ORR1A2 LTR MaLR -42 285 1 4 1143 680 229 101 12 chr9 73260970 73261138 -50815034 - ID_B1 SINE B4 -10 214 32 4 1143 616 222 98 38 chr9 73261504 73261687 -50814485 + ID_B1 SINE B4 8 201 -23 4 1143 265 312 132 37 chr9 73261677 73261950 -50814222 + Tigger11a DNA MER2_type 104 402 -333 4 1143 763 272 64 11 chr9 73262980 73263306 -50812866 + ORR1E LTR MaLR 1 371 -8 4 1143 608 117 58 0 chr9 73264885 73264988 -50811184 + PB1D9 SINE Alu 12 120 0 4 1143 849 269 94 44 chr9 73265603 73265714 -50810458 - L1M3 LINE L1 -1459 4681 4565 4 1143 1643 205 53 11 chr9 73265714 73266069 -50810103 - ORR1D2 LTR MaLR 0 370 1 4 1143 849 269 94 44 chr9 73266069 73266476 -50809696 - L1M3 LINE L1 -1576 4564 4146 4 1143 237 33 0 0 chr9 73266476 73266506 -50809666 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4 1143 849 269 94 44 chr9 73266506 73266603 -50809569 - L1M3 LINE L1 -1995 4145 4035 4 1143 509 271 111 16 chr9 73266603 73266841 -50809331 - MTD LTR MaLR 0 419 140 4 1143 736 300 62 27 chr9 73266898 73267158 -50809014 - MTD LTR MaLR -149 270 2 4 1143 1259 295 42 11 chr9 73267161 73267683 -50808489 - L1M3 LINE L1 -2104 4036 3499 4 1143 763 265 107 5 chr9 73267703 73267900 -50808272 - ID_B1 SINE B4 -6 218 2 4 1143 459 0 0 0 chr9 73267912 73267963 -50808209 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1143 209 189 72 21 chr9 73268040 73268137 -50808035 + (CTATT)n Simple_repeat Simple_repeat 1 102 0 4 1143 21 0 0 0 chr9 73268928 73268949 -50807223 + AT_rich Low_complexity Low_complexity 1 21 0 4 1144 1351 70 11 5 chr9 73269779 73269967 -50806205 + L1Md_F2 LINE L1 6382 6570 -12 4 1144 429 66 0 0 chr9 73270382 73270443 -50805729 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1144 962 287 31 17 chr9 73270591 73270885 -50805287 - ORR1D2 LTR MaLR 0 370 73 4 1144 1527 48 67 0 chr9 73272051 73272294 -50803878 + L1Md_F3 LINE L1 6363 6584 0 4 1144 405 0 0 0 chr9 73272437 73272482 -50803690 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1144 699 12 0 0 chr9 73272647 73272727 -50803445 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1144 201 382 41 7 chr9 73272754 73272899 -50803273 - L2 LINE L2 -1817 1602 1453 4 1144 190 388 23 0 chr9 73273158 73273289 -50802883 - MIR SINE MIR -78 190 60 4 1144 204 97 0 0 chr9 73273306 73273337 -50802835 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1144 230 154 26 0 chr9 73274278 73274317 -50801855 - B4A SINE B4 -119 173 134 4 1144 614 267 6 57 chr9 73274487 73274662 -50801510 - B4A SINE B4 -1 291 126 4 1144 866 219 62 0 chr9 73274993 73275185 -50800987 - B3 SINE B2 -7 209 6 4 1144 351 278 129 31 chr9 73275324 73275580 -50800592 - L1MC4 LINE L1 -5073 1142 862 4 1144 281 224 139 39 chr9 73276907 73277015 -50799157 + L1M2 LINE L1 5744 5862 -327 4 1144 264 200 0 0 chr9 73277490 73277555 -50798617 + (CAT)n Simple_repeat Simple_repeat 3 67 0 4 1144 631 246 125 6 chr9 73277928 73278096 -50798076 + ID_B1 SINE B4 1 188 -36 4 1144 424 93 161 5 chr9 73278412 73278519 -50797653 - B2_Mm2 SINE B2 -7 188 47 5 1144 1303 42 65 0 chr9 73278532 73278700 -50797472 - B2_Mm2 SINE B2 -14 181 3 5 1144 243 248 88 10 chr9 73279149 73279251 -50796921 + L1MC4 LINE L1 1270 1379 -4836 5 1144 226 286 186 9 chr9 73279602 73279715 -50796457 + LTR33 LTR ERVL 3 135 -380 5 1144 1167 256 31 106 chr9 73281454 73281569 -50794603 - ORR1E LTR MaLR 0 359 247 5 1144 1435 199 226 19 chr9 73281569 73282039 -50794133 + RMER2 LTR ERV1 1 567 0 5 1144 1167 256 31 106 chr9 73282039 73282311 -50793861 - ORR1E LTR MaLR -113 246 1 5 1144 282 260 0 0 chr9 73282522 73282595 -50793577 - Charlie7 DNA MER1_type -834 1778 1706 5 1144 423 301 106 29 chr9 73282822 73283096 -50793076 - Charlie7 DNA MER1_type -977 1635 1341 5 1144 625 228 158 12 chr9 73283226 73283390 -50792782 - B3 SINE B2 -4 212 25 5 1144 582 320 151 62 chr9 73283400 73284286 -50791886 - Charlie7 DNA MER1_type -1363 1249 285 5 1144 749 258 41 0 chr9 73286129 73286323 -50789849 - ID_B1 SINE B4 -18 206 5 5 1144 521 210 94 31 chr9 73287089 73287217 -50788955 + B1_Mur2 SINE Alu 2 137 -12 5 1144 969 224 12 19 chr9 73287248 73287453 -50788719 + B3A SINE B2 1 192 -3 5 1144 195 204 0 0 chr9 73288177 73288221 -50787951 + (CGTG)n Simple_repeat Simple_repeat 3 46 0 5 1144 205 340 86 33 chr9 73288626 73288778 -50787394 - MIRb SINE MIR -43 225 66 5 1144 370 308 190 21 chr9 73289330 73289572 -50786600 - L1MCc LINE L1 -5178 1245 963 5 1144 186 103 0 0 chr9 73289728 73289757 -50786415 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1144 246 62 0 0 chr9 73289823 73289855 -50786317 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 5 1144 4096 189 16 18 chr9 73289858 73290628 -50785544 - Lx5 LINE L1 -13 7037 6270 5 1144 25 0 0 0 chr9 73291836 73291861 -50784311 + AT_rich Low_complexity Low_complexity 1 25 0 5 1144 2928 215 88 33 chr9 73292678 73293227 -50782945 - RMER1C Other Other -8 1334 764 5 1144 396 0 0 0 chr9 73293227 73293271 -50782901 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1144 2928 231 78 32 chr9 73293271 73293639 -50782533 - RMER1C Other Other -579 763 43 5 1144 497 261 118 34 chr9 73293697 73293959 -50782213 - Lx8 LINE L1 0 7473 7190 5 1144 1185 75 0 0 chr9 73293987 73294134 -50782038 + B1_Mm SINE Alu 1 147 0 5 1144 280 167 0 0 chr9 73294247 73294295 -50781877 + MTEb LTR MaLR 3 50 -329 5 1144 3108 233 60 18 chr9 73294296 73294366 -50781806 + RMER1A Other Other 69 135 -895 5 1144 492 32 0 0 chr9 73294366 73294428 -50781744 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1144 3108 233 60 18 chr9 73294428 73295121 -50781051 + RMER1A Other Other 136 864 -166 5 1144 964 288 59 20 chr9 73295184 73295489 -50780683 + MTEb LTR MaLR 38 354 -25 5 1144 526 218 87 20 chr9 73295765 73295915 -50780257 + Lx5 LINE L1 6621 6780 -270 5 1144 313 221 34 50 chr9 73295927 73296046 -50780126 + Lx6 LINE L1 7285 7401 -59 5 1144 202 118 29 0 chr9 73296065 73296099 -50780073 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 5 1144 3479 174 36 28 chr9 73296348 73297033 -50779139 + Lx5 LINE L1 6357 7047 -3 5 1144 802 234 12 47 chr9 73297077 73297299 -50778873 + B3A SINE B2 1 216 0 5 1144 258 250 71 61 chr9 73297307 73297405 -50778767 + B3 SINE B2 111 209 -7 5 1144 234 0 0 0 chr9 73297566 73297592 -50778580 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1144 196 155 41 27 chr9 73298215 73298288 -50777884 + CT-rich Low_complexity Low_complexity 1 74 0 5 1144 253 358 0 0 chr9 73298288 73298369 -50777803 + C-rich Low_complexity Low_complexity 1 81 0 5 1144 222 321 43 86 chr9 73298476 73298592 -50777580 + L2c LINE L2 3273 3383 -4 5 1144 330 325 116 23 chr9 73298691 73298864 -50777308 - MIRb SINE MIR -40 228 36 5 1144 946 125 28 0 chr9 73299648 73299792 -50776380 + B1_Mur4 SINE Alu 3 150 0 5 1144 264 161 0 0 chr9 73299792 73299854 -50776318 + (CAG)n Simple_repeat Simple_repeat 1 62 0 5 1144 489 232 0 21 chr9 73300090 73300187 -50775985 + PB1D10 SINE Alu 2 96 -21 5 1144 849 71 0 0 chr9 73300421 73300534 -50775638 + (TCTCCC)n Simple_repeat Simple_repeat 3 115 0 5 1144 683 251 16 22 chr9 73300541 73300724 -50775448 - B3A SINE B2 -15 183 2 5 1144 962 223 24 10 chr9 73300988 73301196 -50774976 + B3 SINE B2 1 211 -5 5 1144 343 100 0 0 chr9 73301465 73301515 -50774657 - ORR1B1 LTR MaLR -8 386 337 5 1144 1224 262 62 41 chr9 73302230 73302648 -50773524 - Lx6 LINE L1 -8 7452 7026 5 1144 2150 122 9 15 chr9 73302648 73302981 -50773191 - ORR1B2 LTR MaLR -36 331 1 5 1144 263 294 141 0 chr9 73303122 73303214 -50772958 + L2a LINE L2 3318 3422 -4 5 1144 803 229 31 15 chr9 73303927 73304122 -50772050 - B3A SINE B2 0 198 1 5 1144 248 424 82 0 chr9 73304313 73304471 -50771701 + LTR33 LTR ERVL 5 175 -340 5 1144 310 320 69 25 chr9 73305050 73305210 -50770962 + L1M5 LINE L1 4307 4473 -1673 5 1144 803 250 0 0 chr9 73306004 73306184 -50769988 - B3A SINE B2 -18 180 1 5 1144 383 191 315 9 chr9 73306273 73306384 -50769788 - B1_Mm SINE Alu -1 146 2 5 1144 715 244 5 44 chr9 73306386 73306592 -50769580 - B3A SINE B2 0 198 1 5 1144 397 296 83 25 chr9 73306778 73306982 -50769190 - L1M4c LINE L1 -4633 1751 1536 5 1144 1190 265 86 14 chr9 73307175 73307523 -50768649 + MTD LTR MaLR 46 418 -1 5 1144 351 0 0 0 chr9 73307810 73307849 -50768323 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1144 7649 52 1 5 chr9 73307851 73308857 -50767315 - L1_Mus1 LINE L1 -11 6556 5525 5 1144 323 290 56 32 chr9 73308864 73309113 -50767059 - L1M4c LINE L1 -4278 1104 850 5 1144 2423 134 6 8 chr9 73311324 73311684 -50764488 + ORR1B2 LTR MaLR 1 359 -8 5 1144 216 0 0 0 chr9 73311770 73311794 -50764378 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1144 405 0 0 0 chr9 73311838 73311883 -50764289 + (CCA)n Simple_repeat Simple_repeat 2 46 0 5 1144 1062 101 0 13 chr9 73312452 73312602 -50763570 - B1_Mus1 SINE Alu 0 148 1 5 1144 458 242 53 0 chr9 73314515 73314610 -50761562 + B4A SINE B4 1 100 -192 5 1144 831 146 36 12 chr9 73314622 73314788 -50761384 + L1_Mus2 LINE L1 6397 6566 0 5 1144 297 0 0 0 chr9 73314791 73314824 -50761348 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1144 237 65 0 0 chr9 73314879 73314910 -50761262 + (CAAT)n Simple_repeat Simple_repeat 1 31 0 5 1144 604 254 127 0 chr9 73314949 73315091 -50761081 + B3A SINE B2 1 160 -38 5 1144 504 48 0 0 chr9 73315094 73315157 -50761015 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1144 530 331 32 100 chr9 73315157 73315320 -50760852 + B4A SINE B4 142 288 -4 5 1144 1334 91 21 0 chr9 73315573 73315759 -50760413 - B2_Mm2 SINE B2 -3 192 3 5 1144 21 71 0 0 chr9 73316129 73316171 -50760001 + AT_rich Low_complexity Low_complexity 1 42 0 5 1144 378 211 47 6 chr9 73317285 73317457 -50758715 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 5 1144 262 78 76 29 chr9 73317480 73317585 -50758587 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1144 297 0 0 0 chr9 73317690 73317723 -50758449 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1144 227 337 42 32 chr9 73317766 73317861 -50758311 - RMER15 LTR ERVL -109 466 371 5 1144 496 324 59 0 chr9 73318019 73318189 -50757983 - Lx8 LINE L1 -383 7090 6911 5 1144 1023 116 7 13 chr9 73318259 73318408 -50757764 - B1_Mus1 SINE Alu 0 148 1 5 1144 623 290 39 6 chr9 73318439 73318595 -50757577 - B3A SINE B2 -36 162 2 5 1144 459 0 0 0 chr9 73319075 73319126 -50757046 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1144 204 320 64 101 chr9 73319399 73319618 -50756554 - L2c LINE L2 -211 3176 2966 5 1144 28 0 0 0 chr9 73320851 73320879 -50755293 + AT_rich Low_complexity Low_complexity 1 28 0 5 1144 327 275 237 15 chr9 73320938 73321204 -50754968 - Lx9 LINE L1 -110 7534 7210 5 1144 23 0 0 0 chr9 73321311 73321334 -50754838 + AT_rich Low_complexity Low_complexity 1 23 0 5 1144 1553 213 35 37 chr9 73321339 73321797 -50754375 - Lx7 LINE L1 -4 7692 7236 5 1144 334 329 31 16 chr9 73321907 73322228 -50753944 - L1M2 LINE L1 -3035 3108 2783 5 1144 544 289 94 7 chr9 73322337 73322636 -50753536 - L1_Rod LINE L1 -3372 2475 2151 5 1144 676 282 34 22 chr9 73323226 73323404 -50752768 + B3A SINE B2 1 180 -18 5 1144 299 256 94 0 chr9 73323603 73323720 -50752452 - Lx9 LINE L1 -49 7595 7468 5 1144 5320 165 15 58 chr9 73323738 73324825 -50751347 + RMER12 LTR ERVK 7 1046 -276 5 1144 726 261 115 23 chr9 73324982 73325369 -50750803 - L1MA8 LINE L1 -2 6289 5861 5 1144 447 19 0 0 chr9 73325369 73325421 -50750751 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1144 514 284 160 21 chr9 73325421 73325510 -50750662 - L1MA8 LINE L1 -431 5860 5747 5 1144 21 57 0 0 chr9 73325658 73325693 -50750479 + AT_rich Low_complexity Low_complexity 1 35 0 5 1144 22 56 0 0 chr9 73326009 73326045 -50750127 + AT_rich Low_complexity Low_complexity 1 36 0 5 1144 180 0 0 0 chr9 73326574 73326594 -50749578 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 1144 806 236 46 6 chr9 73326606 73326781 -50749391 + B3A SINE B2 1 182 -16 5 1144 231 114 0 0 chr9 73328357 73328401 -50747771 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 5 1144 23 0 0 0 chr9 73329746 73329769 -50746403 + AT_rich Low_complexity Low_complexity 1 23 0 5 1144 531 239 94 0 chr9 73330143 73330260 -50745912 - B1_Mur1 SINE Alu -12 137 10 5 1144 780 268 240 52 chr9 73333136 73333557 -50742615 + RMER20B LTR ERVK 90 589 -38 5 1144 1342 307 171 32 chr9 73334207 73334552 -50741620 + Lx8 LINE L1 4218 4577 -1303 5 1144 601 197 148 8 chr9 73334552 73334680 -50741492 + B1_Mur2 SINE Alu 4 149 0 5 1144 1342 308 166 32 chr9 73334680 73335830 -50740342 + Lx8 LINE L1 4578 5918 -1555 5 1144 841 258 41 10 chr9 73336808 73337004 -50739168 - B3 SINE B2 -13 203 2 5 1144 1233 61 0 0 chr9 73337157 73337304 -50738868 - B1_Mm SINE Alu 0 147 1 6 1144 225 159 0 0 chr9 73338025 73338069 -50738103 + A-rich Low_complexity Low_complexity 1 44 0 6 1144 1874 99 29 14 chr9 73338303 73338605 -50737567 + RLTRETN_Mm LTR ERVK 1 377 -16 6 1144 259 333 56 0 chr9 73339115 73339241 -50736931 + L1M7 LINE L1 1459 1591 -4627 6 1144 390 91 0 0 chr9 73339358 73339413 -50736759 + (TCC)n Simple_repeat Simple_repeat 1 55 0 6 1144 625 230 116 41 chr9 73339413 73339585 -50736587 - B3A SINE B2 -13 185 1 6 1144 414 100 0 0 chr9 73339608 73339668 -50736504 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1144 275 77 0 0 chr9 73340197 73340236 -50735936 + 4.5SRNA scRNA scRNA 5 43 -51 6 1144 3127 113 23 19 chr9 73340498 73340968 -50735204 + Lx3A LINE L1 6479 6950 -31 6 1144 261 0 0 0 chr9 73340969 73340998 -50735174 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 1144 393 314 16 88 chr9 73341092 73341284 -50734888 + MIRc SINE MIR 53 230 -38 6 1144 2422 267 112 18 chr9 73341309 73342164 -50734008 + Lx8 LINE L1 6536 7471 -2 6 1144 8648 111 39 11 chr9 73342178 73343566 -50732606 + Lx3C LINE L1 5546 6976 0 6 1144 23 0 0 0 chr9 73343574 73343597 -50732575 + AT_rich Low_complexity Low_complexity 1 23 0 6 1144 692 199 30 8 chr9 73347358 73347490 -50728682 - B1_Mur1 SINE Alu -2 147 13 6 1144 1122 253 88 42 chr9 73348262 73348786 -50727386 + L1M2 LINE L1 3232 3779 -2364 6 1144 975 228 51 10 chr9 73348789 73348984 -50727188 + B3 SINE B2 1 203 -13 6 1144 399 211 0 0 chr9 73348984 73349074 -50727098 + (TA)n Simple_repeat Simple_repeat 1 90 0 6 1144 7588 63 2 3 chr9 73349103 73350047 -50726125 - L1Md_F2 LINE L1 -14 6568 5626 6 1144 702 235 65 54 chr9 73350079 73350340 -50725832 + L1M2 LINE L1 3811 4074 -2069 6 1144 396 292 91 1 chr9 73350792 73350963 -50725209 - MIR SINE MIR -17 251 69 6 1144 1641 257 75 71 chr9 73351516 73352062 -50724110 + Lx9 LINE L1 6919 7469 -175 6 1144 249 108 0 0 chr9 73352062 73352099 -50724073 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1144 1641 257 75 71 chr9 73352099 73352272 -50723900 + Lx9 LINE L1 7470 7641 -3 6 1144 290 290 80 0 chr9 73352842 73352942 -50723230 + PB1D10 SINE Alu 10 117 0 6 1144 183 156 0 0 chr9 73352945 73352977 -50723195 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1144 635 171 222 7 chr9 73352992 73353145 -50723027 + RMER1B Other Other 881 1066 0 6 1144 756 293 127 21 chr9 73353871 73354342 -50721830 + L1MA6 LINE L1 2139 2659 -3484 6 1144 267 324 85 59 chr9 73354351 73354469 -50721703 + B4A SINE B4 43 163 -129 6 1144 1397 251 114 75 chr9 73354622 73355260 -50720912 + L1MA6 LINE L1 4695 5357 -786 6 1144 764 276 43 30 chr9 73355354 73355653 -50720519 + L1MA6 LINE L1 5514 5816 -475 6 1144 243 0 0 0 chr9 73355696 73355723 -50720449 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 6 1144 839 182 0 42 chr9 73355725 73355868 -50720304 - B1_Mur2 SINE Alu -12 137 1 6 1144 230 255 0 0 chr9 73355877 73355928 -50720244 + L1MA6 LINE L1 6215 6265 -35 6 1144 642 202 8 39 chr9 73355977 73356106 -50720066 + B1F SINE Alu 24 148 -1 6 1144 295 313 90 26 chr9 73356133 73356315 -50719857 + MLT1A LTR MaLR 1 179 -195 6 1144 205 228 35 17 chr9 73356336 73356394 -50719778 + MIRc SINE MIR 88 146 -122 6 1144 353 314 56 19 chr9 73356690 73356852 -50719320 + MLT1A LTR MaLR 194 361 -13 6 1144 215 106 43 0 chr9 73356886 73356933 -50719239 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 6 1144 209 140 0 23 chr9 73357101 73357145 -50719027 + CT-rich Low_complexity Low_complexity 2 44 0 6 1144 959 230 18 22 chr9 73357150 73357372 -50718800 - ID_B1 SINE B4 -1 223 3 6 1144 231 270 0 0 chr9 73358889 73358952 -50717220 + CT-rich Low_complexity Low_complexity 1 63 0 6 1144 1889 225 60 5 chr9 73359500 73359897 -50716275 + MTD LTR MaLR 1 419 0 6 1144 485 274 17 0 chr9 73360034 73360151 -50716021 + RSINE1 SINE B4 5 123 -42 6 1144 660 278 153 34 chr9 73362317 73362475 -50713697 + ORR1E LTR MaLR 27 208 -151 6 1144 4336 109 128 11 chr9 73362475 73362818 -50713354 + RMER17D2 LTR ERVK 1 400 -409 6 1144 1079 111 17 0 chr9 73362818 73362990 -50713182 + (TCTCC)n Simple_repeat Simple_repeat 3 177 0 6 1144 4336 109 128 11 chr9 73362990 73363370 -50712802 + RMER17D2 LTR ERVK 401 808 -1 6 1144 660 278 153 34 chr9 73363370 73363505 -50712667 + ORR1E LTR MaLR 209 355 -4 6 1144 263 321 77 21 chr9 73363542 73363685 -50712487 - MER20 DNA MER1_type -67 152 2 6 1144 1116 133 0 0 chr9 73366529 73366709 -50709463 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1144 381 93 0 0 chr9 73366709 73366763 -50709409 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1144 243 125 0 0 chr9 73366844 73366884 -50709288 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1144 854 274 33 0 chr9 73367100 73367315 -50708857 - ID_B1 SINE B4 0 224 3 6 1144 254 212 127 100 chr9 73369860 73369970 -50706202 - B3 SINE B2 -1 194 82 6 1144 468 0 0 0 chr9 73373068 73373120 -50703052 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1144 378 0 0 0 chr9 73373120 73373161 -50703011 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1144 982 207 23 0 chr9 73373949 73374123 -50702049 + B3 SINE B2 1 178 -38 6 1144 5108 137 151 4 chr9 73375889 73376832 -50699340 + RLTR25A LTR ERVK 1 1081 -22 6 1144 459 52 0 0 chr9 73376850 73376908 -50699264 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 6 1144 252 247 62 41 chr9 73376967 73377064 -50699108 + MLT1K LTR MaLR 399 497 -98 6 1144 212 56 83 0 chr9 73377210 73377246 -50698926 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 6 1144 180 0 0 0 chr9 73377497 73377517 -50698655 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1144 1004 95 0 0 chr9 73377517 73377654 -50698518 - B2_Mm2 SINE B2 -33 162 26 6 1144 218 148 16 0 chr9 73377664 73377670 -50698502 + (TA)n Simple_repeat Simple_repeat 1 6 0 6 1144 333 0 0 0 chr9 73377670 73377707 -50698465 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1144 218 148 16 0 chr9 73377707 73377761 -50698411 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1144 1022 203 21 5 chr9 73378370 73378563 -50697609 - B3 SINE B2 -19 197 2 6 1144 240 273 0 102 chr9 73378670 73378768 -50697404 + RMER17D LTR ERVK 170 257 -632 6 1144 192 77 0 0 chr9 73379243 73379269 -50696903 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 6 1144 453 19 0 0 chr9 73379707 73379761 -50696411 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1144 578 301 7 7 chr9 73379915 73380059 -50696113 + RSINE1 SINE B4 3 146 -19 6 1144 22 35 0 0 chr9 73380082 73380111 -50696061 + AT_rich Low_complexity Low_complexity 1 29 0 6 1144 29 70 0 0 chr9 73381125 73381182 -50694990 + AT_rich Low_complexity Low_complexity 1 57 0 6 1144 186 43 0 0 chr9 73381233 73381256 -50694916 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 6 1144 942 240 0 0 chr9 73381268 73381451 -50694721 - ID_B1 SINE B4 -41 183 1 6 1144 539 148 22 7 chr9 73381975 73382111 -50694061 + (TA)n Simple_repeat Simple_repeat 2 139 0 6 1144 537 314 35 31 chr9 73382260 73382462 -50693710 - L1M2 LINE L1 -502 5789 5587 6 1144 180 0 0 0 chr9 73382462 73382482 -50693690 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1144 537 247 60 50 chr9 73382482 73382586 -50693586 - L1M2 LINE L1 -705 5586 5482 6 1144 215 256 154 11 chr9 73382787 73382878 -50693294 - MIRc SINE MIR -144 124 21 6 1144 182 326 83 48 chr9 73383828 73383973 -50692199 - L4 LINE RTE -1114 915 766 6 1144 2758 145 19 2 chr9 73384214 73384628 -50691544 - MTC LTR MaLR 0 421 1 6 1144 813 285 39 20 chr9 73384872 73385076 -50691096 + B3 SINE B2 1 208 -8 6 1144 255 222 12 122 chr9 73386077 73386096 -50690076 - ID4 SINE ID -8 75 63 6 1144 3157 151 88 26 chr9 73386096 73386627 -50689545 + RLTR12A LTR ERVK 1 564 -4 6 1144 255 222 12 122 chr9 73386627 73386689 -50689483 - ID4 SINE ID -21 62 3 6 1144 815 270 35 35 chr9 73387334 73387349 -50688823 - B4 SINE B4 -4 288 276 6 1144 480 117 0 0 chr9 73387349 73387426 -50688746 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 1144 815 270 35 35 chr9 73387426 73387613 -50688559 - B4 SINE B4 -17 275 86 6 1144 726 284 55 8 chr9 73387638 73387838 -50688334 - B3A SINE B2 -6 210 9 6 1144 436 253 21 0 chr9 73387829 73387924 -50688248 - B4 SINE B4 -191 101 5 6 1144 260 341 16 0 chr9 73388592 73388718 -50687454 + L1MA9 LINE L1 6178 6305 -7 6 1144 222 264 148 11 chr9 73389213 73389301 -50686871 - L2a LINE L2 -7 3419 3320 6 1144 661 196 0 32 chr9 73389448 73389633 -50686539 + CT-rich Low_complexity Low_complexity 1 179 0 6 1144 22 0 0 0 chr9 73389887 73389909 -50686263 + AT_rich Low_complexity Low_complexity 1 22 0 6 1144 1392 44 0 0 chr9 73391758 73391938 -50684234 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1144 302 0 0 0 chr9 73392440 73392476 -50683696 + L1Md_F3 LINE L1 6527 6562 -22 6 1144 196 347 38 51 chr9 73393665 73393744 -50682428 - L2c LINE L2 -224 3163 3086 6 1144 771 32 0 0 chr9 73393986 73394080 -50682092 + (TC)n Simple_repeat Simple_repeat 2 95 0 6 1144 244 208 19 0 chr9 73394440 73394493 -50681679 - MER46C DNA MER2_type -17 321 268 6 1144 261 0 0 0 chr9 73394965 73394994 -50681178 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 1144 209 277 0 0 chr9 73395387 73395434 -50680738 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1144 333 100 0 0 chr9 73395611 73395661 -50680511 + (CCTCG)n Simple_repeat Simple_repeat 2 51 0 6 1144 595 84 20 53 chr9 73395661 73395812 -50680360 + CT-rich Low_complexity Low_complexity 2 147 0 6 1144 945 27 0 0 chr9 73395827 73395939 -50680233 + (TTTCC)n Simple_repeat Simple_repeat 4 115 0 6 1144 725 269 7 0 chr9 73395940 73396081 -50680091 - B1_Mur3 SINE Alu -7 142 1 6 1144 1617 99 0 18 chr9 73396968 73397195 -50678977 - L1_Mm LINE L1 -117 5766 5544 6 1144 21 0 0 0 chr9 73398336 73398357 -50677815 + AT_rich Low_complexity Low_complexity 1 21 0 6 1144 2641 173 34 34 chr9 73399046 73399539 -50676633 + RMER5 LTR ERV1 5 508 -26 6 1144 1445 147 4 39 chr9 73399539 73399772 -50676400 - URR1A DNA MER1_type 0 226 2 6 1144 2641 173 34 34 chr9 73399772 73399806 -50676366 + RMER5 LTR ERV1 509 532 -2 6 1145 1257 130 120 0 chr9 73400761 73400961 -50675211 - URR1A DNA MER1_type -2 224 1 6 1145 1055 248 9 0 chr9 73401709 73401923 -50674249 - B3 SINE B2 0 216 1 7 1145 212 321 93 58 chr9 73401967 73402139 -50674033 + MER5A DNA MER1_type 1 178 -11 7 1145 210 208 20 20 chr9 73403669 73403718 -50672454 + (TATG)n Simple_repeat Simple_repeat 4 52 0 7 1145 828 253 77 70 chr9 73403754 73404026 -50672146 - B4A SINE B4 -18 274 1 7 1145 472 252 42 0 chr9 73404165 73404284 -50671888 - ID_B1 SINE B4 -15 209 86 7 1145 1002 204 66 5 chr9 73405699 73405896 -50670276 - B3 SINE B2 -6 210 2 7 1145 198 0 0 0 chr9 73405998 73406020 -50670152 + (C)n Simple_repeat Simple_repeat 1 22 0 7 1145 674 264 84 10 chr9 73407128 73407331 -50668841 - ID_B1 SINE B4 -4 220 3 7 1145 32 0 0 0 chr9 73407692 73407724 -50668448 + AT_rich Low_complexity Low_complexity 1 32 0 7 1145 395 268 10 0 chr9 73408805 73408902 -50667270 + PB1D10 SINE Alu 13 110 -7 7 1145 396 226 55 36 chr9 73409290 73409400 -50666772 + PB1D10 SINE Alu 5 116 -1 7 1145 471 63 0 0 chr9 73409453 73409516 -50666656 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1145 275 279 116 0 chr9 73409545 73409631 -50666541 - RSINE1 SINE B4 -61 104 9 7 1145 792 139 33 0 chr9 73409618 73409740 -50666432 - B1_Mur2 SINE Alu -11 138 13 7 1145 354 255 46 95 chr9 73409647 73409811 -50666361 - MT2B LTR ERVL -326 258 98 7 1145 566 92 0 20 chr9 73410008 73410108 -50666064 + Lx LINE L1 6553 6650 -4 7 1145 738 194 46 73 chr9 73410290 73410477 -50665695 + B3A SINE B2 1 200 -16 7 1145 351 0 0 0 chr9 73410477 73410516 -50665656 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1145 662 282 53 34 chr9 73412958 73413167 -50663005 + B3A SINE B2 2 214 -2 7 1145 225 0 0 0 chr9 73413410 73413435 -50662737 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1145 210 355 40 74 chr9 73414247 73414355 -50661817 + MER5A DNA MER1_type 4 117 -72 7 1145 4529 148 9 19 chr9 73414355 73415050 -50661122 + RLTR17 LTR ERVK 1 688 -4 7 1145 210 355 40 74 chr9 73415050 73415090 -50661082 + MER5A DNA MER1_type 118 147 -42 7 1145 1368 86 3 0 chr9 73415738 73416044 -50660128 + (TG)n Simple_repeat Simple_repeat 1 307 0 7 1145 478 329 33 20 chr9 73416082 73416234 -50659938 - B4A SINE B4 -123 169 16 7 1145 1965 219 69 20 chr9 73416483 73416935 -50659237 + RMER19C LTR ERVK 138 611 0 7 1145 507 287 130 22 chr9 73417348 73417533 -50658639 - B3 SINE B2 -10 206 2 7 1145 567 287 90 43 chr9 73419334 73419633 -50656539 + MLT1B LTR MaLR 72 384 -6 7 1145 226 68 0 0 chr9 73420347 73420391 -50655781 - Lx LINE L1 0 6654 6611 7 1145 2524 89 0 3 chr9 73420391 73420716 -50655456 - Lx LINE L1 -9 6645 6322 7 1145 210 37 0 0 chr9 73420870 73420897 -50655275 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1145 213 196 0 0 chr9 73421021 73421067 -50655105 + CT-rich Low_complexity Low_complexity 1 46 0 7 1145 459 203 139 33 chr9 73421153 73421275 -50654897 + ID_B1 SINE B4 87 221 -3 7 1145 239 286 29 0 chr9 73421476 73421546 -50654626 - B4A SINE B4 -8 284 213 7 1145 192 321 85 30 chr9 73422117 73422281 -50653891 + L2 LINE L2 255 427 -2992 7 1145 326 339 26 111 chr9 73422409 73422598 -50653574 - L1MEg LINE L1 -5678 406 234 7 1145 455 322 35 75 chr9 73422654 73422882 -50653290 + B4A SINE B4 48 266 -26 7 1145 23 54 0 0 chr9 73423570 73423607 -50652565 + AT_rich Low_complexity Low_complexity 1 37 0 7 1145 512 342 60 34 chr9 73423939 73424205 -50651967 - B4A SINE B4 -18 274 2 7 1145 367 250 41 24 chr9 73424208 73424331 -50651841 - L1MA8 LINE L1 -163 6128 6004 7 1145 1582 227 34 42 chr9 73425023 73425404 -50650768 + MTE2b LTR MaLR 2 379 0 7 1145 589 340 51 22 chr9 73425616 73425890 -50650282 - B4A SINE B4 -5 287 6 7 1145 734 274 40 50 chr9 73426476 73426676 -50649496 + B3A SINE B2 1 198 0 7 1145 765 74 0 47 chr9 73426789 73426916 -50649256 + Lx LINE L1 6531 6651 -3 7 1145 1085 276 31 31 chr9 73427328 73427620 -50648552 - B4A SINE B4 0 292 1 7 1145 239 260 62 148 chr9 73428937 73429181 -50646991 + L1MA4 LINE L1 2976 3198 -2945 7 1145 180 212 0 0 chr9 73429257 73429323 -50646849 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1145 762 269 162 71 chr9 73429350 73430030 -50646142 + L1MA4 LINE L1 5278 6020 -280 7 1145 29 78 0 0 chr9 73430207 73430271 -50645901 + AT_rich Low_complexity Low_complexity 1 64 0 7 1145 23923 19 1 1 chr9 73430271 73433675 -50642497 - L1Md_T LINE L1 -1 6581 3177 7 1145 272 214 100 89 chr9 73433715 73433905 -50642267 + Zaphod DNA Tip100 951 1142 -2889 7 1145 5375 36 5 14 chr9 73433947 73434574 -50641598 + L1Md_F3 LINE L1 5963 6583 -1 7 1145 22 56 0 0 chr9 73435399 73435435 -50640737 + AT_rich Low_complexity Low_complexity 1 36 0 7 1145 257 193 18 0 chr9 73435837 73435894 -50640278 - ID_B1 SINE B4 0 224 167 7 1145 1501 227 103 26 chr9 73435931 73436271 -50639901 + ORR1D2 LTR MaLR 5 370 0 7 1145 325 191 147 0 chr9 73436287 73436355 -50639817 - ID4_ SINE ID -2 81 4 7 1145 237 313 56 78 chr9 73436773 73436863 -50639309 + MLT1J2 LTR MaLR 1 88 -360 7 1145 316 366 66 18 chr9 73436896 73437063 -50639109 + MLT1J2 LTR MaLR 156 330 -118 7 1145 1864 119 75 62 chr9 73437201 73437523 -50638649 + ORR1A3 LTR MaLR 1 326 0 7 1145 289 303 20 66 chr9 73437544 73437696 -50638476 + YREP_Mm Unknown Unknown 150 294 -1518 7 1145 706 242 0 0 chr9 73437586 73437718 -50638454 - ID_B1 SINE B4 -11 213 82 7 1145 290 306 0 0 chr9 73437734 73437806 -50638366 - tRNA-Ile-ATT tRNA tRNA -3 74 3 7 1145 1244 208 174 7 chr9 73438110 73438415 -50637757 + MTD LTR MaLR 46 401 -18 7 1145 299 236 121 52 chr9 73438426 73438542 -50637630 + MLT1A1 LTR MaLR 263 386 -22 7 1145 411 157 43 0 chr9 73438583 73438653 -50637519 - tRNA-Lys-AAG tRNA tRNA 0 76 4 7 1145 1019 306 35 33 chr9 73438688 73439087 -50637085 - BGLII_B LTR ERVK -41 400 1 7 1145 433 283 80 0 chr9 73439908 73440021 -50636151 - ID_B1 SINE B4 -4 220 99 7 1145 342 312 115 15 chr9 73439910 73440040 -50636132 - B1F1 SINE Alu -6 143 1 7 1145 291 114 0 0 chr9 73440347 73440391 -50635781 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1145 225 0 0 0 chr9 73440766 73440791 -50635381 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1145 4870 43 2 0 chr9 73441363 73441942 -50634230 + L1Md_F2 LINE L1 5007 5586 -297 7 1145 9049 28 1 5 chr9 73441942 73442941 -50633231 + L1Md_F2 LINE L1 5587 6581 -1 7 1145 410 261 76 34 chr9 73443002 73443121 -50633051 - RSINE1 SINE B4 -39 126 3 7 1145 582 140 0 0 chr9 73443365 73443465 -50632707 + (GA)n Simple_repeat Simple_repeat 2 101 0 7 1145 240 330 103 84 chr9 73443611 73443932 -50632240 - L2 LINE L2 -419 3000 2674 7 1145 830 241 77 5 chr9 73444118 73444314 -50631858 + B3 SINE B2 6 215 -1 7 1145 37490 41 22 5 chr9 73445171 73450364 -50625808 + L1Md_T LINE L1 324 5586 -297 7 1145 8604 54 0 0 chr9 73450364 73451360 -50624812 + L1Md_T LINE L1 5587 6582 0 7 1145 548 260 161 17 chr9 73451525 73451705 -50624467 + ID_B1 SINE B4 2 207 -17 7 1145 440 368 62 13 chr9 73451943 73452169 -50624003 + L1M3de LINE L1 957 1193 -5460 7 1145 393 207 25 8 chr9 73452194 73452316 -50623856 + GA-rich Low_complexity Low_complexity 1 124 0 7 1145 305 84 27 27 chr9 73452518 73452591 -50623581 + (CAAAA)n Simple_repeat Simple_repeat 3 75 0 7 1145 531 281 136 34 chr9 73452633 73453183 -50622989 + L1M3de LINE L1 1330 2134 -4519 7 1145 726 239 45 6 chr9 73453288 73453444 -50622728 + RSINE1 SINE B4 4 165 0 7 1145 247 363 11 0 chr9 73453898 73453989 -50622183 + (TG)n Simple_repeat Simple_repeat 2 93 0 7 1145 747 250 71 0 chr9 73454150 73454318 -50621854 - B3A SINE B2 -18 180 1 7 1145 46 54 0 0 chr9 73454895 73454969 -50621203 + AT_rich Low_complexity Low_complexity 1 74 0 7 1145 498 191 16 8 chr9 73455847 73455974 -50620198 + (TG)n Simple_repeat Simple_repeat 1 128 0 7 1145 897 264 82 84 chr9 73456950 73457425 -50618747 + RLTR11A2 LTR ERVK 4 477 -50 7 1145 2453 121 16 13 chr9 73457479 73457864 -50618308 + ORR1B1 LTR MaLR 1 386 -8 7 1145 319 262 116 58 chr9 73457882 73458020 -50618152 - B4A SINE B4 -38 254 109 7 1145 213 109 18 35 chr9 73458025 73458082 -50618090 + T-rich Low_complexity Low_complexity 2 57 0 7 1145 239 280 0 0 chr9 73458084 73458134 -50618038 - B4A SINE B4 -206 86 37 7 1145 297 329 61 23 chr9 73458606 73458867 -50617305 + L1M5 LINE L1 5507 5777 -347 7 1145 2382 207 152 13 chr9 73459012 73459565 -50616607 + Lx7 LINE L1 6774 7403 -293 7 1145 231 36 0 0 chr9 73461322 73461350 -50614822 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1145 1164 96 0 14 chr9 73462011 73462159 -50614013 - B1_Mus1 SINE Alu -2 146 1 7 1145 792 298 6 0 chr9 73462920 73463101 -50613071 + B3A SINE B2 1 182 -16 7 1145 237 341 47 12 chr9 73463628 73463714 -50612458 + B4 SINE B4 2 90 -202 7 1145 783 276 5 16 chr9 73463860 73464044 -50612128 + B3A SINE B2 1 182 -16 7 1145 226 214 0 0 chr9 73464044 73464086 -50612086 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1145 1051 236 33 166 chr9 73464915 73465336 -50610836 + MTE2a LTR MaLR 1 365 -14 7 1145 192 226 48 16 chr9 73465821 73465884 -50610288 + L4 LINE RTE 1371 1435 -594 7 1145 691 235 51 19 chr9 73465944 73466100 -50610072 + RSINE1 SINE B4 3 163 -2 7 1145 1147 240 5 0 chr9 73466418 73466635 -50609537 + ID_B1 SINE B4 6 223 -1 7 1145 27 49 0 0 chr9 73466750 73466791 -50609381 + AT_rich Low_complexity Low_complexity 1 41 0 7 1145 267 286 162 0 chr9 73467110 73467215 -50608957 + B1F SINE Alu 2 123 -26 7 1145 340 235 36 24 chr9 73467517 73467600 -50608572 + MLT1F LTR MaLR 63 146 -402 8 1145 2449 229 22 10 chr9 73467630 73468128 -50608044 - Lx6 LINE L1 -12 7448 6945 8 1145 306 167 19 0 chr9 73468144 73468198 -50607974 - B3A SINE B2 -142 56 2 8 1145 761 286 5 15 chr9 73469566 73469765 -50606407 - B3A SINE B2 0 198 2 8 1145 7006 41 5 0 chr9 73471304 73472105 -50604067 - L1Md_F2 LINE L1 0 6582 5778 8 1145 400 299 71 17 chr9 73472618 73472881 -50603291 + MTEb LTR MaLR 45 363 -16 8 1145 436 256 86 0 chr9 73473614 73473731 -50602441 + B3A SINE B2 28 154 -44 8 1145 495 48 0 0 chr9 73473732 73473794 -50602378 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1145 727 185 89 0 chr9 73474563 73474698 -50601474 - B1_Mur2 SINE Alu 0 149 3 8 1145 502 220 83 16 chr9 73474740 73474873 -50601299 - MTD LTR MaLR -14 405 272 8 1145 480 277 15 0 chr9 73474913 73475043 -50601129 - MTD LTR MaLR -270 149 18 8 1145 198 0 0 0 chr9 73476779 73476801 -50599371 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1145 432 0 0 0 chr9 73477440 73477488 -50598684 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1145 30 27 0 0 chr9 73478023 73478060 -50598112 + AT_rich Low_complexity Low_complexity 1 37 0 8 1145 1003 206 11 6 chr9 73478236 73478412 -50597760 - B3A SINE B2 -18 180 4 8 1145 582 262 27 40 chr9 73478426 73478649 -50597523 + L1M5 LINE L1 3760 3979 -2167 8 1145 6096 7 0 1 chr9 73478642 73479319 -50596853 + L1Md_T LINE L1 4911 5586 -297 8 1145 8713 47 1 0 chr9 73479319 73480314 -50595858 + L1Md_T LINE L1 5587 6582 0 8 1145 392 276 19 9 chr9 73480496 73480602 -50595570 + PB1D10 SINE Alu 3 109 -8 8 1145 402 292 27 14 chr9 73480717 73480863 -50595309 + L1M5 LINE L1 4326 4473 -1673 8 1145 195 114 0 0 chr9 73481458 73481493 -50594679 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1145 783 271 6 6 chr9 73481514 73481685 -50594487 + B3A SINE B2 3 173 -25 8 1145 500 100 0 12 chr9 73482065 73482146 -50594026 + (TG)n Simple_repeat Simple_repeat 1 80 0 8 1145 549 285 15 0 chr9 73482174 73482304 -50593868 - B3A SINE B2 -65 133 2 8 1145 994 163 0 0 chr9 73482982 73483129 -50593043 - B1_Mus1 SINE Alu 0 148 2 8 1145 690 197 162 11 chr9 73483165 73483350 -50592822 - B3 SINE B2 -3 213 1 8 1145 228 335 49 78 chr9 73483694 73483898 -50592274 + MIR SINE MIR 65 262 0 8 1145 240 241 74 41 chr9 73484052 73484173 -50591999 + MamRep434 DNA TcMar 114 238 -188 8 1145 1187 82 7 0 chr9 73484174 73484321 -50591851 + B1_Mus1 SINE Alu 1 148 0 8 1145 1200 110 0 4 chr9 73484328 73484555 -50591617 + (GAAA)n Simple_repeat Simple_repeat 1 226 0 8 1145 805 312 47 82 chr9 73484628 73485029 -50591143 + MTD LTR MaLR 19 405 -14 8 1145 239 262 0 16 chr9 73485113 73485175 -50590997 + (TATG)n Simple_repeat Simple_repeat 4 64 0 8 1145 189 0 0 0 chr9 73485701 73485722 -50590450 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1145 430 300 136 0 chr9 73485870 73486010 -50590162 + Lx8 LINE L1 7172 7330 -143 8 1145 890 203 128 0 chr9 73486031 73486218 -50589954 + B3 SINE B2 6 216 0 8 1145 758 158 57 14 chr9 73486232 73486373 -50589799 - B1_Mm SINE Alu 0 147 1 8 1145 249 205 16 33 chr9 73487356 73487477 -50588695 + GA-rich Low_complexity Low_complexity 1 119 0 8 1145 3676 23 2 0 chr9 73488222 73488617 -50587555 - MTA_Mm LTR MaLR 0 396 1 8 1145 445 311 70 31 chr9 73489461 73489717 -50586455 + MER89 LTR ERV1 292 557 -2 8 1145 1301 48 0 0 chr9 73489820 73489967 -50586205 + B1_Mus1 SINE Alu 2 148 0 8 1145 222 75 36 36 chr9 73489974 73490029 -50586143 + (CAAAAA)n Simple_repeat Simple_repeat 5 59 0 8 1145 200 167 21 0 chr9 73491554 73491602 -50584570 + (TA)n Simple_repeat Simple_repeat 1 49 0 8 1145 555 250 90 34 chr9 73492779 73492957 -50583215 + B3 SINE B2 28 215 -1 8 1145 374 0 22 0 chr9 73492970 73493016 -50583156 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1145 1961 209 0 21 chr9 73493018 73493394 -50582778 - MTC LTR MaLR -9 412 45 8 1145 225 0 0 0 chr9 73493394 73493419 -50582753 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 8 1145 351 324 28 37 chr9 73493894 73494003 -50582169 + RSINE1 SINE B4 58 165 0 8 1145 334 327 76 13 chr9 73494040 73494198 -50581974 + MLT1A0 LTR MaLR 89 256 -109 8 1145 231 222 56 0 chr9 73494307 73494361 -50581811 + MLT1G1 LTR MaLR 7 63 -381 8 1145 6904 137 78 58 chr9 73494365 73495740 -50580432 + RMER12B LTR ERVK 2 1404 0 8 1145 343 332 188 29 chr9 73495821 73496199 -50579973 + MLT1G1 LTR MaLR 141 578 -1 8 1145 609 14 0 0 chr9 73496362 73496432 -50579740 + (TTCCC)n Simple_repeat Simple_repeat 5 74 0 8 1145 499 340 145 51 chr9 73496551 73497201 -50578971 + MLT1G1-int LTR MaLR 296 1006 -403 8 1145 582 171 0 0 chr9 73497671 73497794 -50578378 + CT-rich Low_complexity Low_complexity 2 124 0 8 1145 1200 267 103 10 chr9 73497954 73498363 -50577809 + Lx8 LINE L1 7027 7473 0 8 1145 351 271 16 41 chr9 73498390 73498513 -50577659 + Lx8 LINE L1 7062 7181 -292 8 1145 315 308 0 0 chr9 73498521 73498610 -50577562 + ID4 SINE ID 3 91 -61 8 1145 228 244 57 23 chr9 73498641 73498729 -50577443 + L1MA8 LINE L1 6195 6285 -6 8 1145 25 51 0 0 chr9 73500021 73500060 -50576112 + AT_rich Low_complexity Low_complexity 1 39 0 1 1145 660 246 88 23 chr9 73500099 73500270 -50575902 - B3A SINE B2 -16 182 1 2 1145 198 0 0 0 chr9 73500608 73500630 -50575542 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3 1145 750 11 0 0 chr9 73501626 73501713 -50574459 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 4 1145 248 73 0 24 chr9 73501713 73501737 -50574435 + (TTCTC)n Simple_repeat Simple_repeat 1 24 0 5 1145 1366 34 0 22 chr9 73501737 73501919 -50574253 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 6 1145 248 73 0 24 chr9 73501919 73501936 -50574236 + (TTCTC)n Simple_repeat Simple_repeat 5 20 0 7 1145 740 233 20 20 chr9 73503390 73503539 -50572633 + RSINE1 SINE B4 1 149 -16 8 1145 210 192 231 0 chr9 73504669 73504721 -50571451 + B3A SINE B2 4 67 -131 9 1145 295 121 0 33 chr9 73505533 73505593 -50570579 + A-rich Low_complexity Low_complexity 2 59 0 1 1145 199 371 86 0 chr9 73506305 73506445 -50569727 + L2 LINE L2 2727 2878 -541 1 1145 446 278 27 43 chr9 73506831 73507015 -50569157 - MER5A DNA MER1_type -3 186 6 1 1145 504 367 45 20 chr9 73508506 73508862 -50567310 + MLT1A0 LTR MaLR 1 365 0 1 1145 313 336 95 26 chr9 73508940 73509288 -50566884 + L1MC4a LINE L1 5555 5926 -1956 1 1145 285 29 0 0 chr9 73509295 73509329 -50566843 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1145 596 228 95 48 chr9 73509401 73509590 -50566582 - B3A SINE B2 0 198 1 1 1145 240 363 39 0 chr9 73510066 73510168 -50566004 - MIRc SINE MIR -53 215 110 1 1145 623 250 175 0 chr9 73510788 73510948 -50565224 - B3 SINE B2 -28 188 1 1 1145 198 0 0 0 chr9 73511422 73511444 -50564728 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1145 28 0 0 0 chr9 73511744 73511772 -50564400 + AT_rich Low_complexity Low_complexity 1 28 0 2 1145 231 36 0 0 chr9 73511773 73511801 -50564371 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1145 683 249 30 84 chr9 73512667 73512904 -50563268 - ID_B1 SINE B4 0 224 1 2 1145 367 292 72 14 chr9 73513047 73513186 -50562986 + MIRc SINE MIR 71 217 -51 2 1145 628 263 8 8 chr9 73513593 73513727 -50562445 + RSINE1 SINE B4 4 137 -28 2 1145 741 269 26 0 chr9 73513905 73514098 -50562074 - B3 SINE B2 -17 199 2 2 1145 21 0 0 0 chr9 73514657 73514678 -50561494 + AT_rich Low_complexity Low_complexity 1 21 0 2 1145 243 344 39 43 chr9 73515694 73515925 -50560247 + Lx8 LINE L1 7231 7460 -13 2 1145 618 82 0 0 chr9 73516587 73516672 -50559500 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2 1145 314 241 20 7 chr9 73516695 73516841 -50559331 + (TCTA)n Simple_repeat Simple_repeat 2 149 0 2 1145 756 287 144 83 chr9 73518117 73518485 -50557687 - MTE2a LTR MaLR -14 405 18 2 1145 3506 55 0 16 chr9 73518682 73519126 -50557046 + L1_Mus1 LINE L1 6131 6567 0 3 1145 186 43 0 0 chr9 73520201 73520224 -50555948 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1145 247 284 13 39 chr9 73520267 73520344 -50555828 - B4A SINE B4 -2 290 216 3 1145 510 219 31 0 chr9 73520439 73520535 -50555637 - B4 SINE B4 -79 213 115 3 1145 873 168 92 25 chr9 73520535 73520731 -50555441 - ORR1D1 LTR MaLR 0 374 166 3 1145 637 103 103 0 chr9 73520735 73520881 -50555291 + GA-rich Low_complexity Low_complexity 2 162 0 3 1145 1078 171 0 6 chr9 73520888 73521070 -50555102 - ORR1D1 LTR MaLR -193 181 1 3 1145 539 267 39 20 chr9 73521070 73521187 -50554985 - B4 SINE B4 -172 120 1 3 1145 563 315 64 34 chr9 73521852 73522118 -50554054 - MER58B DNA MER1_type -48 293 20 3 1145 414 299 140 31 chr9 73522702 73522958 -50553214 + MER67C LTR ERV1 23 297 -414 3 1145 390 297 89 20 chr9 73523209 73523545 -50552627 + Arthur1 DNA Tip100 3434 3786 -161 3 1145 750 238 0 50 chr9 73523693 73523852 -50552320 + B3A SINE B2 1 151 -47 3 1145 423 68 0 0 chr9 73523858 73523917 -50552255 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1145 597 236 38 65 chr9 73525048 73525234 -50550938 - B3A SINE B2 -16 182 2 4 1145 223 291 0 0 chr9 73525632 73525687 -50550485 + ID4 SINE ID 2 56 -27 4 1145 657 195 8 39 chr9 73525730 73525858 -50550314 - B1_Mus2 SINE Alu -21 126 3 4 1145 454 304 19 25 chr9 73529494 73529656 -50546516 + RSINE1 SINE B4 3 163 -2 4 1145 23 54 0 0 chr9 73529680 73529717 -50546455 + AT_rich Low_complexity Low_complexity 1 37 0 4 1145 25 65 0 0 chr9 73529734 73529780 -50546392 + AT_rich Low_complexity Low_complexity 1 46 0 4 1145 1196 54 18 18 chr9 73529780 73529949 -50546223 - L1Md_F2 LINE L1 -3 6579 6411 4 1145 3580 145 48 151 chr9 73529949 73530833 -50545339 + RLTR40 LTR ERVK 18 810 -7 4 1145 393 306 73 24 chr9 73531172 73531296 -50544876 + RSINE1 SINE B4 7 136 -29 4 1146 405 0 0 0 chr9 73532147 73532192 -50543980 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1146 429 219 10 42 chr9 73533244 73533381 -50542791 - B3A SINE B2 -64 129 3 5 1146 713 304 72 24 chr9 73533497 73533787 -50542385 + MLT1A0 LTR MaLR 62 365 0 5 1146 739 289 87 0 chr9 73534302 73534568 -50541604 + B4A SINE B4 2 290 -2 5 1146 384 22 0 0 chr9 73535360 73535405 -50540767 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1146 873 218 77 5 chr9 73535483 73535677 -50540495 - B3 SINE B2 -8 208 1 5 1146 218 291 11 23 chr9 73535738 73535826 -50540346 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 5 1146 25 0 0 0 chr9 73535925 73535950 -50540222 + AT_rich Low_complexity Low_complexity 1 25 0 5 1146 6591 14 0 0 chr9 73536092 73536832 -50539340 - L1Md_T LINE L1 0 6582 5843 5 1146 5983 19 0 0 chr9 73536832 73537555 -50538617 + L1Md_T LINE L1 4981 5703 -180 5 1146 656 265 22 0 chr9 73538201 73538337 -50537835 + RSINE1 SINE B4 3 141 -24 5 1146 905 237 24 5 chr9 73538378 73538590 -50537582 + B3 SINE B2 1 216 0 6 1146 919 288 13 40 chr9 73538918 73539218 -50536954 - B4A SINE B4 0 292 1 6 1146 1086 243 52 125 chr9 73539345 73539745 -50536427 + MTE2a LTR MaLR 7 377 -2 6 1146 857 112 72 7 chr9 73540145 73540297 -50535875 - L1_Mus3 LINE L1 -4 6634 6473 6 1146 317 218 195 0 chr9 73540409 73540496 -50535676 - MER5A DNA MER1_type -56 133 30 6 1146 487 361 6 6 chr9 73540649 73540805 -50535367 + RSINE1 SINE B4 3 158 -7 6 1146 315 0 0 0 chr9 73540811 73540846 -50535326 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1146 516 16 0 0 chr9 73540846 73540906 -50535266 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1146 1043 266 41 102 chr9 73541781 73542175 -50533997 + MTE2a LTR MaLR 1 370 -9 6 1146 801 275 34 5 chr9 73543191 73543399 -50532773 + B3 SINE B2 2 215 -1 6 1146 46 54 0 0 chr9 73543405 73543479 -50532693 + AT_rich Low_complexity Low_complexity 1 74 0 7 1146 264 270 0 0 chr9 73543575 73543690 -50532482 + (CA)n Simple_repeat Simple_repeat 2 116 0 7 1146 970 115 124 24 chr9 73544330 73544499 -50531673 - B2_Mm2 SINE B2 -7 188 3 7 1146 415 238 0 0 chr9 73544670 73544750 -50531422 - ID2 SINE ID -1 82 3 7 1146 282 299 124 0 chr9 73544761 73544858 -50531314 - PB1 SINE Alu -2 125 17 7 1146 182 147 88 0 chr9 73544927 73544961 -50531211 + L4 LINE RTE 1788 1824 -205 7 1146 213 214 17 51 chr9 73545154 73545213 -50530959 + CT-rich Low_complexity Low_complexity 4 60 0 7 1146 189 0 0 0 chr9 73545506 73545527 -50530645 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1146 22 56 0 0 chr9 73546278 73546314 -50529858 + AT_rich Low_complexity Low_complexity 1 36 0 7 1146 651 259 20 54 chr9 73546314 73546518 -50529654 - B3A SINE B2 0 198 2 7 1146 233 29 29 0 chr9 73547542 73547576 -50528596 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1146 240 258 62 46 chr9 73548574 73548704 -50527468 + Charlie4a DNA MER1_type 349 480 -28 8 1146 441 0 0 0 chr9 73548765 73548814 -50527358 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 8 1146 353 231 10 52 chr9 73549310 73549406 -50526766 + PB1D10 SINE Alu 17 108 -9 8 1146 765 146 0 0 chr9 73549436 73549587 -50526585 + (GAAA)n Simple_repeat Simple_repeat 4 154 0 8 1146 7572 79 10 5 chr9 73549645 73551632 -50524540 + L1VL4 LINE L1 45 2042 -1517 8 1146 1712 117 68 0 chr9 73551629 73551910 -50524262 + Lx LINE L1 5255 5554 -329 8 1146 5318 145 31 5 chr9 73551910 73552784 -50523388 + Lx LINE L1 5758 6654 0 8 1146 609 254 123 6 chr9 73552813 73552983 -50523189 + B3 SINE B2 27 216 0 8 1146 2631 108 66 0 chr9 73554302 73554710 -50521462 + Lx2A LINE L1 6574 7008 0 8 1146 2430 80 9 12 chr9 73554718 73555046 -50521126 - ORR1A2 LTR MaLR 0 327 1 8 1146 594 148 0 0 chr9 73555817 73555918 -50520254 + (TA)n Simple_repeat Simple_repeat 2 102 0 9 1146 3189 60 0 5 chr9 73556628 73557031 -50519141 + L1_Mus2 LINE L1 6166 6566 0 9 1146 277 24 48 0 chr9 73557227 73557269 -50518903 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1146 266 333 10 103 chr9 73558563 73558660 -50517512 - B1F SINE Alu -3 146 59 9 1146 458 271 29 24 chr9 73558741 73558911 -50517261 + RLTR42-int LTR ERVK 1230 1400 -4122 9 1146 507 292 18 42 chr9 73559403 73559434 -50516738 - ID_B1 SINE B4 -60 164 136 9 1146 2497 147 8 8 chr9 73559434 73559826 -50516346 + ORR1B1 LTR MaLR 3 394 0 9 1146 507 292 18 42 chr9 73559826 73559962 -50516210 - ID_B1 SINE B4 -89 135 2 9 1146 180 0 0 0 chr9 73560298 73560318 -50515854 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1146 458 75 15 0 chr9 73560664 73560731 -50515441 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1146 1916 171 109 13 chr9 73560762 73561146 -50515026 - MTC LTR MaLR 0 421 1 9 1146 374 206 49 130 chr9 73562165 73562288 -50513884 - PB1D7 SINE Alu 0 120 8 1 1146 2672 145 29 18 chr9 73562534 73562990 -50513182 + RMER6B LTR ERVK 1 461 0 1 1146 1071 281 100 63 chr9 73563082 73563854 -50512318 - Lx8 LINE L1 -1545 5928 5096 1 1146 770 194 112 22 chr9 73563901 73564080 -50512092 - MTD LTR MaLR -23 396 202 1 1146 664 74 65 0 chr9 73564101 73564209 -50511963 + B2_Mm2 SINE B2 78 192 -3 1 1146 695 186 0 0 chr9 73564209 73564327 -50511845 - B1_Mur1 SINE Alu -10 139 22 1 1146 255 103 0 0 chr9 73564370 73564409 -50511763 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1146 22 56 0 0 chr9 73564504 73564540 -50511632 + AT_rich Low_complexity Low_complexity 1 36 0 1 1146 255 204 0 0 chr9 73564567 73564621 -50511551 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1146 220 259 38 152 chr9 73565101 73565141 -50511031 - B2_Mm1t SINE B2 -10 183 142 1 1146 234 0 0 0 chr9 73565141 73565167 -50511005 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1146 424 272 39 98 chr9 73565167 73565313 -50510859 - B3A SINE B2 -52 141 8 1 1146 210 167 36 18 chr9 73565383 73565438 -50510734 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 1 1146 276 100 0 0 chr9 73565578 73565618 -50510554 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1146 804 64 0 18 chr9 73565618 73565729 -50510443 - B1_Mus1 SINE Alu 0 148 40 1 1146 311 167 81 27 chr9 73565663 73565737 -50510435 - RLTR25B LTR ERVK -519 509 432 1 1146 838 103 239 0 chr9 73565880 73566035 -50510137 - B2_Mm2 SINE B2 -2 193 2 1 1146 432 373 59 50 chr9 73566219 73566558 -50509614 - LTR33A LTR ERVL -28 492 151 1 1146 736 174 87 0 chr9 73566526 73566664 -50509508 + MTD LTR MaLR 258 407 -12 1 1146 306 237 0 0 chr9 73567978 73568075 -50508097 + (CA)n Simple_repeat Simple_repeat 1 97 0 1 1146 270 295 163 0 chr9 73568654 73568783 -50507389 + RSINE1 SINE B4 3 152 -13 1 1146 428 339 105 22 chr9 73569998 73570321 -50505851 - L1MEc LINE L1 -4147 2253 1904 1 1146 306 0 0 0 chr9 73570325 73570359 -50505813 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1146 489 281 13 46 chr9 73570363 73570378 -50505794 - RSINE1 SINE B4 -15 150 140 1 1146 180 0 0 0 chr9 73570378 73570398 -50505774 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 1 1146 489 281 13 46 chr9 73570398 73570535 -50505637 - RSINE1 SINE B4 -26 139 3 1 1146 236 250 0 50 chr9 73570614 73570715 -50505457 + T-rich Low_complexity Low_complexity 3 98 0 1 1146 620 168 207 5 chr9 73570841 73571063 -50505109 - Lx9 LINE L1 -1 7643 7377 1 1146 449 219 113 83 chr9 73571255 73571303 -50504869 - MT2B LTR ERVL -267 334 210 1 1146 757 62 62 0 chr9 73571303 73571416 -50504756 - B1_Mus2 SINE Alu -27 120 1 1 1146 462 211 67 50 chr9 73571309 73571429 -50504743 - B4 SINE B4 -92 200 79 1 1146 449 219 113 83 chr9 73571429 73571459 -50504713 - MT2B LTR ERVL -267 209 125 1 1146 391 274 62 0 chr9 73571614 73571727 -50504445 + Lx8 LINE L1 7171 7290 -183 1 1146 241 276 141 114 chr9 73572400 73572776 -50503396 - RMER10A LTR ERVL -38 404 19 1 1146 257 317 72 63 chr9 73572951 73573062 -50503110 - PB1D7 SINE Alu -6 114 3 1 1146 346 275 21 32 chr9 73572974 73573068 -50503104 - ID_B1 SINE B4 -54 170 78 1 1146 246 59 0 0 chr9 73573290 73573302 -50502870 + (T)n Simple_repeat Simple_repeat 1 12 0 1 1146 1174 61 0 7 chr9 73573302 73573451 -50502721 - B1_Mus1 SINE Alu 0 148 1 1 1146 246 59 0 0 chr9 73573451 73573472 -50502700 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1146 738 334 109 22 chr9 73574150 73574471 -50501701 + ORR1E LTR MaLR 5 353 -6 1 1146 1147 89 0 0 chr9 73574886 73575032 -50501140 - B1_Mus1 SINE Alu -2 146 1 1 1146 182 91 30 0 chr9 73575152 73575185 -50500987 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1146 216 220 17 17 chr9 73575839 73575899 -50500273 + CT-rich Low_complexity Low_complexity 5 64 0 1 1146 232 250 0 0 chr9 73575915 73575971 -50500201 + (CATA)n Simple_repeat Simple_repeat 4 59 0 1 1146 549 233 24 32 chr9 73575981 73576105 -50500067 - B3A SINE B2 -67 131 9 1 1146 3340 41 5 0 chr9 73576473 73576867 -50499305 + MTA_Mm LTR MaLR 1 396 0 1 1146 244 333 19 9 chr9 73577073 73577179 -50498993 + L3 LINE CR1 4118 4224 -265 1 1146 270 0 0 0 chr9 73578146 73578176 -50497996 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1146 448 361 149 11 chr9 73578369 73578719 -50497453 + L1MEc LINE L1 327 724 -5676 1 1146 437 295 52 41 chr9 73578989 73579448 -50496724 + L1M2 LINE L1 4257 4720 -1423 1 1146 184 194 0 0 chr9 73579512 73579543 -50496629 + L4 LINE RTE 1456 1486 -543 1 1146 403 342 63 30 chr9 73579589 73579857 -50496315 + L1MEc LINE L1 1309 1585 -4815 1 1146 340 329 85 35 chr9 73579881 73580139 -50496033 + L1MEc LINE L1 4062 4332 -1987 1 1146 391 282 184 43 chr9 73580194 73580542 -50495630 + L1MD LINE L1 4639 5035 -1111 1 1146 287 269 59 27 chr9 73580551 73580738 -50495434 + L1MEc LINE L1 5465 5657 -695 1 1146 898 317 34 23 chr9 73582548 73583026 -50493146 - L1M2 LINE L1 -481 5810 5328 1 1146 629 275 14 59 chr9 73583685 73583905 -50492267 - B3 SINE B2 -6 210 1 1 1146 287 306 128 34 chr9 73585333 73585482 -50490690 - RSINE1 SINE B4 0 165 3 1 1146 258 313 24 18 chr9 73586944 73587113 -50489059 + (TATATG)n Simple_repeat Simple_repeat 2 171 0 1 1146 194 333 0 0 chr9 73587494 73587542 -50488630 + MIRm SINE MIR 213 260 -16 1 1146 917 77 100 0 chr9 73587855 73587985 -50488187 + B1_Mus2 SINE Alu 5 147 0 1 1146 455 302 65 16 chr9 73588094 73588279 -50487893 + MLT1A0 LTR MaLR 1 194 -171 1 1146 325 241 9 9 chr9 73588473 73588586 -50487586 + CT-rich Low_complexity Low_complexity 3 115 0 1 1146 263 289 33 22 chr9 73588586 73588678 -50487494 - ID_B1 SINE B4 -131 93 1 1 1146 25 0 0 0 chr9 73589785 73589810 -50486362 + AT_rich Low_complexity Low_complexity 1 25 0 1 1146 253 311 154 37 chr9 73590161 73590375 -50485797 + MER90 LTR ERV1 28 266 -309 1 1146 494 70 14 0 chr9 73590443 73590514 -50485658 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 1 1146 573 61 0 0 chr9 73590566 73590648 -50485524 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1146 744 281 0 0 chr9 73590650 73590803 -50485369 - B3A SINE B2 -42 156 4 1 1146 21 71 0 0 chr9 73591883 73591925 -50484247 + AT_rich Low_complexity Low_complexity 1 42 0 1 1146 242 159 32 0 chr9 73592099 73592162 -50484010 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 1146 191 200 100 0 chr9 73592219 73592269 -50483903 - MIRc SINE MIR -104 164 110 1 1146 505 287 98 47 chr9 73592272 73592528 -50483644 + Lx8 LINE L1 6936 7204 -269 1 1146 691 289 29 60 chr9 73593401 73593437 -50482735 - B3 SINE B2 -18 175 138 1 1146 245 0 0 79 chr9 73593437 73593475 -50482697 + (TATG)n Simple_repeat Simple_repeat 1 35 0 1 1146 691 284 24 18 chr9 73593475 73593621 -50482551 - B3 SINE B2 -63 153 5 1 1146 321 184 0 0 chr9 73594199 73594248 -50481924 + B1F2 SINE Alu 1 49 -100 1 1146 283 266 42 158 chr9 73594615 73594780 -50481392 - MTE2b LTR MaLR -143 236 91 1 1146 312 328 24 16 chr9 73594792 73594916 -50481256 + MTD LTR MaLR 3 127 -292 1 1146 22 70 0 0 chr9 73594927 73594970 -50481202 + AT_rich Low_complexity Low_complexity 1 43 0 1 1146 793 221 35 35 chr9 73595249 73595446 -50480726 - B3A SINE B2 0 198 2 1 1146 642 264 16 0 chr9 73595542 73595667 -50480505 + ID_B1 SINE B4 88 214 -10 1 1146 910 341 64 54 chr9 73596734 73597140 -50479032 + MTD LTR MaLR 10 419 0 1 1146 2392 143 5 22 chr9 73598350 73598757 -50477415 + MTB LTR MaLR 1 400 0 1 1146 34 65 0 0 chr9 73598853 73598915 -50477257 + AT_rich Low_complexity Low_complexity 1 62 0 1 1146 26 0 0 0 chr9 73598974 73599000 -50477172 + AT_rich Low_complexity Low_complexity 1 26 0 1 1146 33 0 0 0 chr9 73600132 73600165 -50476007 + AT_rich Low_complexity Low_complexity 1 33 0 1 1146 252 0 0 0 chr9 73600212 73600240 -50475932 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 1 1146 225 274 27 14 chr9 73600455 73600529 -50475643 + ID4_ SINE ID 1 75 -8 1 1146 181 191 51 17 chr9 73600840 73600957 -50475215 + (TA)n Simple_repeat Simple_repeat 1 121 0 1 1146 316 134 134 0 chr9 73601206 73601273 -50474899 + B2_Mm2 SINE B2 4 79 -116 1 1146 232 203 115 51 chr9 73601273 73601284 -50474888 + B4 SINE B4 4 86 -206 1 1146 287 56 0 0 chr9 73601489 73601525 -50474647 + U2 snRNA snRNA 1 36 -152 1 1146 186 150 0 0 chr9 73602115 73602155 -50474017 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1146 640 159 36 12 chr9 73602592 73602757 -50473415 + (TATG)n Simple_repeat Simple_repeat 4 172 0 1 1146 379 291 55 0 chr9 73603140 73603250 -50472922 + MER5B DNA MER1_type 63 178 0 1 1146 201 344 0 0 chr9 73603293 73603357 -50472815 - L2a LINE L2 -1 3425 3362 1 1146 728 22 11 0 chr9 73603358 73603448 -50472724 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 1146 474 49 0 0 chr9 73603719 73603780 -50472392 + (CATAC)n Simple_repeat Simple_repeat 2 62 0 1 1146 901 266 85 93 chr9 73605012 73605377 -50470795 - MTE2a LTR MaLR -17 362 1 1 1146 541 198 9 19 chr9 73605528 73605636 -50470536 - B1F SINE Alu -20 129 23 1 1146 487 308 82 61 chr9 73607126 73607320 -50468852 + B4A SINE B4 1 205 -87 1 1146 552 30 0 0 chr9 73607320 73607386 -50468786 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1146 487 308 82 61 chr9 73607386 73607471 -50468701 + B4A SINE B4 206 285 -7 1 1146 243 244 115 62 chr9 73607429 73607525 -50468647 + B3 SINE B2 110 210 -6 1 1146 787 248 28 14 chr9 73607781 73607994 -50468178 - ID_B1 SINE B4 -8 216 1 1 1146 242 259 56 0 chr9 73608666 73608720 -50467452 - RMER30 DNA MER1_type -144 58 2 1 1146 256 298 20 60 chr9 73608881 73608981 -50467191 + PB1 SINE Alu 28 123 -4 1 1146 227 281 0 17 chr9 73609160 73609276 -50466896 + CT-rich Low_complexity Low_complexity 2 115 0 2 1146 861 167 0 0 chr9 73610155 73610329 -50465843 + (TG)n Simple_repeat Simple_repeat 1 174 0 2 1146 669 283 5 37 chr9 73610331 73610518 -50465654 - B3A SINE B2 -16 182 2 2 1146 956 102 0 43 chr9 73610566 73610730 -50465442 - L1Md_F2 LINE L1 0 6582 6426 2 1146 690 167 39 8 chr9 73611076 73611203 -50464969 - B3 SINE B2 -5 211 81 2 1146 380 285 175 35 chr9 73611581 73612137 -50464035 + L1MA7 LINE L1 5638 6287 -4 2 1146 342 280 21 0 chr9 73612844 73612937 -50463235 + RSINE1 SINE B4 3 97 -68 2 1146 491 194 9 0 chr9 73613487 73613595 -50462577 + CT-rich Low_complexity Low_complexity 2 110 0 2 1146 565 259 135 21 chr9 73613765 73613958 -50462214 + B3 SINE B2 2 216 0 2 1146 24 0 0 0 chr9 73615142 73615166 -50461006 + AT_rich Low_complexity Low_complexity 1 24 0 2 1146 975 158 112 15 chr9 73616287 73616493 -50459679 + URR1A DNA MER1_type 1 226 0 2 1146 22 0 0 0 chr9 73617088 73617110 -50459062 + AT_rich Low_complexity Low_complexity 1 22 0 2 1146 226 385 131 6 chr9 73617260 73617443 -50458729 + MER63A DNA AcHobo 1 206 -4 2 1146 482 324 28 0 chr9 73617610 73617755 -50458417 + RSINE1 SINE B4 3 151 -14 2 1146 570 114 0 0 chr9 73617757 73617845 -50458327 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 1146 945 204 244 14 chr9 73618268 73618551 -50457621 + ORR1D1 LTR MaLR 27 374 0 2 1146 840 239 57 0 chr9 73618571 73618780 -50457392 - ID_B1 SINE B4 -1 223 3 2 1146 262 341 104 15 chr9 73618798 73618932 -50457240 + LTR40a LTR ERVL 236 381 -138 2 1146 224 275 0 68 chr9 73619296 73619370 -50456802 + L2a LINE L2 3357 3425 -1 2 1146 265 341 73 36 chr9 73619486 73619623 -50456549 - MIR SINE MIR -114 148 7 2 1146 30 77 0 0 chr9 73619726 73619791 -50456381 + AT_rich Low_complexity Low_complexity 1 65 0 2 1146 464 276 18 30 chr9 73619921 73620089 -50456083 + HAL1-2a_MD LINE L1 2328 2493 -531 2 1146 524 194 58 70 chr9 73620155 73620327 -50455845 + HAL1-2a_MD LINE L1 2346 2515 -509 2 1146 380 266 6 0 chr9 73620374 73620543 -50455629 + (CAT)n Simple_repeat Simple_repeat 1 170 0 2 1146 537 268 33 76 chr9 73620548 73620758 -50455414 + HAL1-2a_MD LINE L1 2326 2526 -498 2 1146 374 372 7 0 chr9 73620758 73620860 -50455312 + (CCA)n Simple_repeat Simple_repeat 3 105 0 2 1146 807 244 267 17 chr9 73620860 73621156 -50455016 + ORR1D2 LTR MaLR 1 370 0 2 1146 374 372 7 0 chr9 73621156 73621206 -50454966 + (CCA)n Simple_repeat Simple_repeat 1 50 0 2 1146 432 102 22 66 chr9 73621210 73621346 -50454826 + (CACCAT)n Simple_repeat Simple_repeat 5 134 0 2 1146 34 42 0 0 chr9 73621798 73621846 -50454326 + AT_rich Low_complexity Low_complexity 1 48 0 2 1146 315 356 66 29 chr9 73622135 73622378 -50453794 - L1MEd LINE L1 -5784 335 84 2 1146 997 41 67 13 chr9 73622808 73622957 -50453215 + L1Md_F3 LINE L1 6427 6583 -1 2 1146 1117 233 120 66 chr9 73623174 73623491 -50452681 + ORR1E LTR MaLR 5 338 -21 2 1146 456 51 0 0 chr9 73623912 73623971 -50452201 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1146 506 286 143 0 chr9 73623974 73624114 -50452058 - B3A SINE B2 -38 160 1 2 1146 208 196 0 21 chr9 73624552 73624599 -50451573 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1146 851 259 17 0 chr9 73624602 73624776 -50451396 - B3 SINE B2 -38 178 2 2 1146 807 285 25 30 chr9 73625052 73625287 -50450885 - MT2A LTR ERVL -80 453 220 2 1146 404 262 67 30 chr9 73626347 73626404 -50449768 - MER2 DNA MER2_type -40 305 243 2 1146 207 0 0 0 chr9 73626404 73626427 -50449745 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1146 404 262 67 30 chr9 73626427 73626534 -50449638 - MER2 DNA MER2_type -103 242 135 2 1146 1116 192 9 36 chr9 73626544 73626765 -50449407 - B3 SINE B2 -1 215 1 2 1146 794 164 13 76 chr9 73626784 73626942 -50449230 - B1_Mur4 SINE Alu -1 149 2 2 1146 3089 88 30 2 chr9 73627085 73627518 -50448654 + Lx2 LINE L1 6551 6995 -2 2 1146 22 0 0 0 chr9 73627544 73627566 -50448606 + AT_rich Low_complexity Low_complexity 1 22 0 2 1146 221 301 27 0 chr9 73628906 73628979 -50447193 + MIRb SINE MIR 180 254 -14 2 1146 204 265 0 0 chr9 73629065 73629114 -50447058 + MIRb SINE MIR 179 227 -41 2 1146 699 320 65 52 chr9 73629580 73629962 -50446210 - MTD LTR MaLR -32 387 1 2 1146 2768 150 24 12 chr9 73631112 73631863 -50444309 + L1_Mur3 LINE L1 773 1534 -4346 2 1146 2542 52 12 0 chr9 73632595 73632919 -50443253 + L1Md_F2 LINE L1 6253 6580 -2 2 1146 7120 66 8 8 chr9 73633090 73634368 -50441804 + L1_Mus2 LINE L1 5288 6565 -1 2 1146 424 339 23 0 chr9 73634953 73635124 -50441048 - MER2 DNA MER2_type -24 321 147 2 1146 1211 68 0 0 chr9 73635205 73635352 -50440820 + B1_Mus2 SINE Alu 1 147 0 2 1146 226 288 0 0 chr9 73635383 73635449 -50440723 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 2 1146 450 0 0 0 chr9 73635654 73635704 -50440468 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2 1146 702 55 0 11 chr9 73635704 73635796 -50440376 - B1_Mus2 SINE Alu -1 146 56 2 1146 277 200 0 84 chr9 73635749 73635820 -50440352 - MT2B LTR ERVL -344 257 193 2 1146 1420 279 111 45 chr9 73635907 73636440 -50439732 + RMER15 LTR ERVL 6 573 -2 2 1146 2485 124 37 3 chr9 73636474 73636855 -50439317 + ORR1B1 LTR MaLR 1 394 0 2 1146 325 247 144 12 chr9 73637774 73637934 -50438238 + Lx8 LINE L1 7291 7471 -2 2 1146 312 216 108 0 chr9 73639037 73639111 -50437061 - RMER12 LTR ERVK -104 1218 1137 2 1146 21 0 0 0 chr9 73639314 73639335 -50436837 + AT_rich Low_complexity Low_complexity 1 21 0 2 1146 652 330 27 0 chr9 73639337 73639522 -50436650 + B3A SINE B2 3 192 -6 2 1146 796 279 5 57 chr9 73639826 73640035 -50436137 - B3A SINE B2 0 198 1 2 1146 270 56 0 0 chr9 73641273 73641309 -50434863 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 2 1146 216 0 0 0 chr9 73642202 73642226 -50433946 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1146 534 296 11 17 chr9 73642343 73642522 -50433650 + Lx8 LINE L1 7060 7237 -236 2 1146 273 329 24 0 chr9 73642529 73642614 -50433558 + RMER15 LTR ERVL 376 462 -113 2 1146 225 0 0 0 chr9 73642851 73642876 -50433296 + (CAT)n Simple_repeat Simple_repeat 2 26 0 2 1146 1470 11 0 0 chr9 73643246 73643420 -50432752 + L1Md_A LINE L1 6409 6582 0 2 1146 207 0 0 0 chr9 73643459 73643482 -50432690 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1146 443 247 41 0 chr9 73644816 73644913 -50431259 + RSINE1 SINE B4 1 101 -64 2 1146 572 143 0 0 chr9 73646064 73646155 -50430017 - ORR1D-int LTR MaLR -1042 328 238 2 1146 256 341 64 6 chr9 73646242 73646420 -50429752 + MIRb SINE MIR 6 197 -71 2 1146 1114 197 230 0 chr9 73647099 73647403 -50428769 + ORR1D1 LTR MaLR 1 374 0 2 1146 5925 196 49 40 chr9 73647403 73648761 -50427411 + ORR1D1-int LTR MaLR 1 1370 0 2 1146 226 217 0 0 chr9 73648761 73648807 -50427365 + ORR1D1 LTR MaLR 1 46 -338 2 1146 1348 109 0 19 chr9 73648823 73649038 -50427134 - Lx2 LINE L1 -12 6985 6775 2 1146 4118 120 23 13 chr9 73649036 73649727 -50426445 - Lx2 LINE L1 -352 6645 5948 2 1146 4837 147 1 0 chr9 73649725 73650570 -50425602 + L1_Mur1 LINE L1 3241 4086 -1800 2 1146 1017 233 186 7 chr9 73650570 73650860 -50425312 + ORR1D1 LTR MaLR 29 370 0 2 1146 230 386 69 10 chr9 73651212 73651314 -50424858 - PB1D10 SINE Alu -3 114 7 2 1146 542 274 130 10 chr9 73651662 73651854 -50424318 - ID_B1 SINE B4 -9 215 1 2 1146 1055 172 43 57 chr9 73652108 73652349 -50423823 + RMER17C LTR ERVK 1 243 -167 2 1146 2690 70 76 3 chr9 73652349 73652719 -50423453 - MTB LTR MaLR 0 400 4 2 1146 1055 172 43 57 chr9 73652719 73652778 -50423394 + RMER17C LTR ERVK 244 297 -113 2 1146 402 21 0 0 chr9 73652897 73652944 -50423228 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1146 606 333 92 46 chr9 73655209 73655580 -50420592 + LTR16B1 LTR ERVL 9 396 -84 2 1146 1324 43 9 28 chr9 73656243 73656671 -50419501 + (TCTCC)n Simple_repeat Simple_repeat 1 419 0 2 1146 453 121 0 0 chr9 73656786 73656869 -50419303 + (TC)n Simple_repeat Simple_repeat 2 84 0 2 1146 315 0 0 0 chr9 73656870 73656905 -50419267 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1146 591 301 134 45 chr9 73656933 73657156 -50419016 + B4A SINE B4 50 292 0 2 1146 522 0 0 0 chr9 73657202 73657260 -50418912 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1146 1220 48 0 0 chr9 73657573 73657719 -50418453 - B1_Mus2 SINE Alu 0 147 2 2 1146 1215 258 40 27 chr9 73657884 73658255 -50417917 + MTE2a LTR MaLR 4 379 0 2 1146 207 0 0 0 chr9 73658303 73658326 -50417846 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1146 449 47 16 0 chr9 73658326 73658389 -50417783 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1146 280 300 2 8 chr9 73658719 73658841 -50417331 + Lx8 LINE L1 7185 7270 -203 2 1146 338 403 57 0 chr9 73659195 73659371 -50416801 + MIR SINE MIR 8 193 -69 2 1146 180 288 114 57 chr9 73660141 73660211 -50415961 + MIRc SINE MIR 34 107 -161 2 1146 236 233 141 22 chr9 73661016 73661108 -50415064 + MIRb SINE MIR 25 127 -141 2 1146 291 272 86 17 chr9 73661306 73661422 -50414750 - MIRc SINE MIR -121 147 24 2 1146 323 96 19 0 chr9 73661829 73661881 -50414291 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1146 28 61 0 0 chr9 73661903 73661952 -50414220 + AT_rich Low_complexity Low_complexity 1 49 0 2 1147 230 191 21 0 chr9 73662716 73662763 -50413409 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 2 1147 482 312 0 9 chr9 73663152 73663265 -50412907 - B3A SINE B2 -86 112 1 2 1147 909 129 0 0 chr9 73663291 73663430 -50412742 + Lx5 LINE L1 6409 6547 -503 3 1147 1734 164 32 16 chr9 73663431 73663746 -50412426 + RMER12 LTR ERVK 1 320 -1002 3 1147 9583 52 1 4 chr9 73663746 73665723 -50410449 - L1Md_F2 LINE L1 -4 6578 4609 3 1147 1413 34 50 17 chr9 73665737 73665918 -50410254 - B2_Mm1a SINE B2 -6 187 1 3 1147 4066 172 119 52 chr9 73665919 73666543 -50409629 + RMER12 LTR ERVK 308 888 -434 3 1147 423 0 0 0 chr9 73666543 73666590 -50409582 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1147 4066 172 119 52 chr9 73666590 73666916 -50409256 + RMER12 LTR ERVK 889 1321 -1 3 1147 2165 236 12 33 chr9 73666916 73667434 -50408738 + Lx5 LINE L1 6543 7049 -1 3 1147 36 23 0 0 chr9 73667435 73667478 -50408694 + AT_rich Low_complexity Low_complexity 1 43 0 3 1147 462 146 0 0 chr9 73668218 73668300 -50407872 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1147 1697 70 7 36 chr9 73668621 73668901 -50407271 + MTB_Mm-int LTR MaLR 827 1098 0 3 1147 3184 69 0 10 chr9 73668901 73669312 -50406860 + MTB_Mm LTR MaLR 1 407 0 3 1147 383 55 0 18 chr9 73669324 73669379 -50406793 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1147 294 248 62 21 chr9 73669381 73669525 -50406647 + L1M2c LINE L1 1918 2067 -4722 3 1147 904 287 140 25 chr9 73670004 73670740 -50405432 + L1M2c LINE L1 4934 5754 -1031 3 1147 459 0 0 0 chr9 73670740 73670791 -50405381 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 3 1147 1849 175 26 26 chr9 73670874 73671220 -50404952 + ORR1B1 LTR MaLR 41 386 -8 3 1147 869 275 14 0 chr9 73671754 73671961 -50404211 - B3 SINE B2 -6 210 1 3 1147 21 0 0 0 chr9 73671968 73671989 -50404183 + AT_rich Low_complexity Low_complexity 1 21 0 3 1147 227 21 40 60 chr9 73671991 73672041 -50404131 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 3 1147 1145 75 0 0 chr9 73672041 73672188 -50403984 - B1_Mus1 SINE Alu 0 148 2 3 1147 808 285 69 14 chr9 73672190 73672407 -50403765 - B4A SINE B4 -58 234 6 3 1147 36444 12 0 7 chr9 73672480 73677883 -50398289 + L1Md_A LINE L1 225 5586 -297 3 1147 8715 15 0 1 chr9 73677883 73678868 -50397304 + L1Md_A LINE L1 5587 6570 -12 3 1147 300 111 0 0 chr9 73679093 73679138 -50397034 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1147 23 33 0 0 chr9 73679343 73679373 -50396799 + AT_rich Low_complexity Low_complexity 1 30 0 3 1147 297 0 0 0 chr9 73679426 73679459 -50396713 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1147 1028 280 19 0 chr9 73679464 73679728 -50396444 - B4A SINE B4 -20 272 4 3 1147 350 367 74 17 chr9 73680087 73680317 -50395855 + L1M5 LINE L1 5459 5701 -539 3 1147 587 261 109 120 chr9 73680322 73680467 -50395705 + B3 SINE B2 5 155 -40 3 1147 381 93 0 0 chr9 73680467 73680521 -50395651 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1147 198 0 0 0 chr9 73680521 73680543 -50395629 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1147 397 261 109 120 chr9 73680543 73680579 -50395593 + B2_Mm2 SINE B2 156 184 -11 3 1147 252 167 0 0 chr9 73681211 73681259 -50394913 + (CATA)n Simple_repeat Simple_repeat 3 50 0 3 1147 667 199 84 19 chr9 73682097 73682251 -50393921 - B3A SINE B2 -19 179 16 3 1147 900 28 0 0 chr9 73683241 73683348 -50392824 + (TG)n Simple_repeat Simple_repeat 1 107 0 3 1147 367 391 26 0 chr9 73683907 73684022 -50392150 - RSINE1 SINE B4 -13 152 35 3 1147 814 275 166 0 chr9 73684284 73684531 -50391641 + B4A SINE B4 1 288 -4 3 1147 550 242 7 29 chr9 73684914 73685050 -50391122 + B1_Mur1 SINE Alu 11 143 -6 3 1147 316 321 0 23 chr9 73686325 73686411 -50389761 - BC1_Mm scRNA scRNA -61 91 8 3 1147 216 329 26 13 chr9 73686552 73686629 -50389543 + B4A SINE B4 4 81 -211 3 1147 384 375 64 29 chr9 73686562 73686735 -50389437 + B3A SINE B2 14 192 -6 3 1147 902 83 0 8 chr9 73687918 73688052 -50388120 + (TCC)n Simple_repeat Simple_repeat 3 135 0 3 1147 259 226 280 0 chr9 73688271 73688364 -50387808 + ORR1D2 LTR MaLR 1 119 -251 3 1147 330 26 0 0 chr9 73688466 73688505 -50387667 + (TCCCC)n Simple_repeat Simple_repeat 5 43 0 3 1147 942 216 33 9 chr9 73688514 73688729 -50387443 + ORR1D2 LTR MaLR 149 368 -2 3 1147 2998 90 2 2 chr9 73689541 73689941 -50386231 - MTB LTR MaLR 0 400 1 3 1147 26 50 0 0 chr9 73690391 73690431 -50385741 + AT_rich Low_complexity Low_complexity 1 40 0 3 1147 879 291 14 24 chr9 73690486 73690775 -50385397 + B4A SINE B4 3 288 -4 3 1147 324 316 120 0 chr9 73691412 73691529 -50384643 + RSINE1 SINE B4 25 155 -10 3 1147 697 306 33 0 chr9 73691576 73691756 -50384416 + B3 SINE B2 1 186 -30 3 1147 496 0 31 0 chr9 73691756 73691820 -50384352 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1147 369 286 0 92 chr9 73691894 73692025 -50384147 - B3A SINE B2 0 198 80 3 1147 306 0 0 0 chr9 73692653 73692687 -50383485 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1147 184 422 12 0 chr9 73692805 73692888 -50383284 - MIRb SINE MIR -156 112 29 3 1147 1345 24 124 0 chr9 73693551 73693720 -50382452 - B2_Mm1a SINE B2 -3 190 1 3 1147 404 267 39 32 chr9 73693780 73693935 -50382237 + Lx9 LINE L1 7077 7232 -412 3 1147 799 179 237 15 chr9 73693935 73694133 -50382039 + ORR1D2 LTR MaLR 1 242 -128 3 1147 380 337 51 23 chr9 73694194 73694370 -50381802 + Lx8 LINE L1 7143 7323 -150 3 1147 43 35 0 0 chr9 73694562 73694619 -50381553 + AT_rich Low_complexity Low_complexity 1 57 0 3 1147 828 276 10 15 chr9 73694856 73695058 -50381114 + B3 SINE B2 2 202 -14 3 1147 1515 185 47 63 chr9 73695331 73695648 -50380524 + ORR1C1 LTR MaLR 1 312 -66 3 1147 465 211 39 0 chr9 73695861 73695965 -50380207 - PB1D10 SINE Alu 0 117 10 3 1147 462 108 0 0 chr9 73697089 73697163 -50379009 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1147 362 70 35 0 chr9 73697205 73697262 -50378910 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 1147 740 254 0 0 chr9 73697456 73697598 -50378574 - B3A SINE B2 -35 163 22 3 1147 379 294 81 81 chr9 73698039 73698335 -50377837 + L1MA4 LINE L1 4255 4550 -1593 3 1147 8769 128 34 2 chr9 73698384 73700105 -50376067 - L1_Mus4 LINE L1 -603 6033 4246 3 1147 625 181 8 0 chr9 73700105 73700232 -50375940 + L1_Mus4 LINE L1 6265 6392 -244 3 1147 742 286 46 40 chr9 73700269 73701048 -50375124 + L1MA4 LINE L1 5185 5991 -309 3 1147 736 247 118 0 chr9 73701053 73701239 -50374933 + B3 SINE B2 2 209 -7 3 1147 297 155 0 121 chr9 73702402 73702468 -50373704 + B1F1 SINE Alu 91 148 -1 3 1147 8461 186 41 6 chr9 73702612 73705077 -50371095 + Lx6 LINE L1 4896 7459 -1 3 1147 330 288 189 17 chr9 73707197 73707377 -50368795 + MIR SINE MIR 6 216 -46 3 1147 761 203 7 7 chr9 73707414 73707563 -50368609 + B1_Mur2 SINE Alu 1 149 0 3 1147 687 305 15 20 chr9 73707598 73707802 -50368370 - B3 SINE B2 -13 203 1 3 1147 2940 228 73 56 chr9 73708723 73709208 -50366964 - RMER19B LTR ERVK -12 890 399 3 1147 3480 20 2 0 chr9 73709208 73709603 -50366569 - MTA_Mm LTR MaLR 0 396 1 3 1147 9068 36 6 1 chr9 73709603 73710696 -50365476 - MTA_Mm-int LTR MaLR 0 1098 1 3 1147 3503 18 2 0 chr9 73710696 73711091 -50365081 - MTA_Mm LTR MaLR 0 396 1 3 1147 2940 228 73 56 chr9 73711091 73711478 -50364694 - RMER19B LTR ERVK -504 398 3 3 1147 6648 58 49 2 chr9 73711885 73712738 -50363434 + RLTR13B1 LTR ERVK 1 893 0 3 1147 227 316 11 33 chr9 73713530 73713710 -50362462 + GA-rich Low_complexity Low_complexity 3 178 0 3 1147 302 314 11 0 chr9 73713730 73713905 -50362267 + GA-rich Low_complexity Low_complexity 3 179 0 3 1147 211 355 0 17 chr9 73713916 73714088 -50362084 + G-rich Low_complexity Low_complexity 1 169 0 3 1147 470 139 0 11 chr9 73714871 73714958 -50361214 + (TATTG)n Simple_repeat Simple_repeat 1 86 0 3 1147 832 213 93 0 chr9 73715914 73716097 -50360075 - B3 SINE B2 -16 200 1 3 1147 292 365 19 75 chr9 73716365 73716495 -50359677 - MER20 DNA MER1_type -38 181 61 3 1147 1211 165 27 5 chr9 73716495 73716714 -50359458 + URR1B DNA MER1_type 2 225 0 3 1147 292 365 19 75 chr9 73716714 73716743 -50359429 - MER20 DNA MER1_type -159 60 32 3 1147 652 331 66 18 chr9 73717005 73717279 -50358893 - MER21B LTR ERV1 -66 797 511 3 1147 474 315 92 20 chr9 73717613 73717765 -50358407 - MER21B LTR ERV1 -598 265 103 3 1147 974 266 51 58 chr9 73718124 73718534 -50357638 - MTE2a LTR MaLR -3 416 1 3 1147 870 278 36 23 chr9 73718534 73718755 -50357417 + B4A SINE B4 37 260 -32 3 1147 504 0 0 0 chr9 73718755 73718811 -50357361 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1147 255 130 0 0 chr9 73718811 73718865 -50357307 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1147 865 186 7 15 chr9 73719187 73719336 -50356836 + B3 SINE B2 11 157 -38 3 1147 252 0 0 0 chr9 73719336 73719364 -50356808 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1147 618 211 52 93 chr9 73719364 73719407 -50356765 + B2_Mm2 SINE B2 158 195 0 3 1147 28 0 0 0 chr9 73719407 73719435 -50356737 + AT_rich Low_complexity Low_complexity 1 28 0 3 1147 80 30 0 0 chr9 73719465 73719566 -50356606 + AT_rich Low_complexity Low_complexity 1 101 0 3 1147 21 0 0 0 chr9 73720193 73720214 -50355958 + AT_rich Low_complexity Low_complexity 1 21 0 3 1147 306 147 0 0 chr9 73720619 73720687 -50355485 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1147 714 233 74 0 chr9 73720687 73720850 -50355322 - B3A SINE B2 -20 178 4 3 1147 189 0 0 0 chr9 73721828 73721849 -50354323 + (CAGGG)n Simple_repeat Simple_repeat 4 24 0 3 1147 360 272 86 86 chr9 73721927 73722124 -50354048 - MER58B DNA MER1_type -137 204 8 3 1147 805 190 21 0 chr9 73722224 73722366 -50353806 + B1_Mm SINE Alu 2 146 -1 3 1147 654 302 43 27 chr9 73723086 73723270 -50352902 + B4 SINE B4 83 269 -23 3 1147 495 0 0 0 chr9 73723270 73723325 -50352847 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1147 295 268 14 0 chr9 73723697 73723768 -50352404 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1147 855 291 24 34 chr9 73723772 73724064 -50352108 - B4A SINE B4 0 292 4 3 1147 392 371 19 28 chr9 73725500 73725716 -50350456 - MER58A DNA MER1_type 0 224 11 3 1147 252 86 0 0 chr9 73727188 73727223 -50348949 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1147 2846 10 0 0 chr9 73727247 73727549 -50348623 - L1Md_A LINE L1 -1 6581 6280 3 1147 285 232 87 0 chr9 73727688 73727757 -50348415 + RSINE1 SINE B4 2 76 -89 3 1147 23 78 0 0 chr9 73727792 73727843 -50348329 + AT_rich Low_complexity Low_complexity 1 51 0 3 1147 399 306 98 88 chr9 73728638 73728935 -50347237 - MLT1A LTR MaLR -54 320 21 4 1147 1557 152 5 0 chr9 73729676 73729900 -50346272 + URR1B DNA MER1_type 1 225 0 4 1147 261 83 0 0 chr9 73730206 73730242 -50345930 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1147 212 240 62 74 chr9 73730306 73730387 -50345785 - B3A SINE B2 -118 80 1 4 1147 280 341 68 0 chr9 73731256 73731388 -50344784 - LTR16C LTR ERVL -2 487 347 4 1147 513 0 0 0 chr9 73731399 73731456 -50344716 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1147 419 314 6 73 chr9 73731927 73732092 -50344080 + MTEa LTR MaLR 3 156 -223 4 1147 5401 148 23 42 chr9 73732710 73733312 -50342860 + Lx4A LINE L1 401 947 -6139 4 1147 4742 171 101 7 chr9 73733312 73734136 -50342036 - RMER19B LTR ERVK -1 901 1 4 1147 5401 146 21 43 chr9 73734136 73734513 -50341659 + Lx4A LINE L1 948 1331 -5755 4 1147 17348 108 55 9 chr9 73734512 73738204 -50337968 + Lx4A LINE L1 3007 6871 -187 4 1147 604 270 37 70 chr9 73738207 73738394 -50337778 - Lx8 LINE L1 -833 6640 6460 4 1147 381 222 27 14 chr9 73738403 73738476 -50337696 - Lx8 LINE L1 -1154 6319 6246 4 1147 882 129 13 60 chr9 73738478 73738502 -50337670 - B1_Mur4 SINE Alu -6 144 129 4 1147 189 0 0 0 chr9 73738502 73738523 -50337649 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1147 946 89 0 0 chr9 73738523 73738647 -50337525 - B1_Mus1 SINE Alu -22 126 3 4 1147 460 200 0 120 chr9 73738536 73738661 -50337511 - MT2B LTR ERVL -337 264 155 4 1147 543 324 64 37 chr9 73738749 73739047 -50337125 + Lx8 LINE L1 7168 7473 0 4 1147 317 273 90 9 chr9 73739210 73739321 -50336851 + L1M4 LINE L1 4839 4958 -1188 4 1147 567 246 68 0 chr9 73739525 73739643 -50336529 + RSINE1 SINE B4 5 130 -35 4 1147 318 87 0 0 chr9 73739667 73739713 -50336459 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1147 235 330 87 0 chr9 73739921 73740024 -50336148 + L1MC4a LINE L1 5412 5523 -2359 4 1147 3276 177 40 15 chr9 73740256 73740863 -50335309 - Lx5 LINE L1 -461 6589 5968 4 1147 2363 190 37 27 chr9 73740856 73741338 -50334834 + Lx5 LINE L1 6561 7047 -3 4 1147 206 57 0 54 chr9 73741384 73741421 -50334751 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1147 234 62 0 0 chr9 73741523 73741555 -50334617 + (TTG)n Simple_repeat Simple_repeat 1 32 0 4 1147 239 331 35 29 chr9 73741601 73741772 -50334400 + L1MC4a LINE L1 7116 7287 -595 4 1147 775 254 9 67 chr9 73742172 73742396 -50333776 + B3 SINE B2 2 212 -4 4 1147 181 0 33 33 chr9 73742439 73742469 -50333703 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 4 1147 431 272 116 14 chr9 73742529 73742745 -50333427 + L1M4 LINE L1 5032 5269 -877 4 1147 198 0 0 0 chr9 73743043 73743065 -50333107 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1147 2285 75 0 0 chr9 73743065 73743360 -50332812 - ORR1A1 LTR MaLR -51 295 1 4 1147 1031 66 15 0 chr9 73743520 73743656 -50332516 - L1Md_F2 LINE L1 -12 6570 6433 4 1147 422 301 146 11 chr9 73744601 73744786 -50331386 + B3 SINE B2 1 210 -6 4 1147 25 0 0 0 chr9 73744843 73744868 -50331304 + AT_rich Low_complexity Low_complexity 1 25 0 4 1147 5592 200 47 33 chr9 73744897 73746618 -50329554 + Lx6 LINE L1 4772 6751 -709 4 1147 1155 90 0 0 chr9 73746623 73746767 -50329405 + B1_Mus2 SINE Alu 3 146 -1 4 1147 576 186 0 0 chr9 73746778 73746891 -50329281 + GA-rich Low_complexity Low_complexity 4 116 0 4 1147 35 0 0 0 chr9 73747184 73747219 -50328953 + AT_rich Low_complexity Low_complexity 1 35 0 4 1147 807 208 7 0 chr9 73747809 73747963 -50328209 + Lx6 LINE L1 7077 7231 -242 4 1147 2293 130 48 61 chr9 73747963 73748437 -50327735 + IAPLTR2_Mm LTR ERVK 1 468 -7 4 1147 5046 56 4 53 chr9 73748437 73749133 -50327039 + IAPEz-int LTR ERVK 1 662 -5819 4 1147 446 66 0 32 chr9 73749133 73749196 -50326976 + IAPEz-int LTR ERVK 1359 1419 -5062 4 1147 1837 123 4 4 chr9 73749185 73749447 -50326725 + IAPEz-int LTR ERVK 2236 2497 -5183 4 1147 900 98 24 0 chr9 73749442 73749565 -50326607 + IAPEz-int LTR ERVK 4783 4908 -2772 4 1147 537 60 0 0 chr9 73749561 73749628 -50326544 + IAPEz-int LTR ERVK 3519 3585 -2896 4 1147 21650 12 2 0 chr9 73749620 73751981 -50324191 + IAPEz-int LTR ERVK 4117 6481 0 4 1147 2293 130 48 61 chr9 73751981 73752455 -50323717 + IAPLTR2_Mm LTR ERVK 1 468 -7 4 1147 428 296 57 31 chr9 73752494 73752686 -50323486 + Lx6 LINE L1 7277 7473 0 4 1147 984 217 11 37 chr9 73752993 73753180 -50322992 - B3A SINE B2 -15 183 2 4 1147 418 333 74 28 chr9 73753228 73753512 -50322660 - L2a LINE L2 -89 3337 3041 4 1147 487 314 44 19 chr9 73753772 73753931 -50322241 - MER5A1 DNA MER1_type -3 163 1 4 1147 3289 30 3 3 chr9 73754691 73755056 -50321116 + RLTR10B2 LTR ERVK 1 365 0 4 1147 432 0 0 0 chr9 73755975 73756023 -50320149 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 4 1147 1086 80 29 0 chr9 73756025 73756163 -50320009 - B1_Mus1 SINE Alu -5 143 2 4 1147 22 35 0 0 chr9 73756228 73756257 -50319915 + AT_rich Low_complexity Low_complexity 1 29 0 4 1147 288 0 0 0 chr9 73756368 73756400 -50319772 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1147 1264 254 25 4 chr9 73756425 73756705 -50319467 - B4 SINE B4 -6 286 1 4 1147 300 53 0 0 chr9 73757395 73757433 -50318739 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1147 522 0 0 0 chr9 73757433 73757490 -50318682 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1147 276 225 132 36 chr9 73757636 73757719 -50318453 - B4 SINE B4 -8 284 194 4 1147 311 307 35 17 chr9 73757685 73757801 -50318371 - PB1D9 SINE Alu -1 119 2 4 1147 6030 204 59 70 chr9 73757818 73760436 -50315736 - Lx9 LINE L1 0 7644 4911 4 1147 3170 223 52 53 chr9 73760461 73760765 -50315407 - Lx9 LINE L1 -1879 3968 3667 4 1147 180 0 0 0 chr9 73760765 73760785 -50315387 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1147 3170 223 52 53 chr9 73760785 73760953 -50315219 - Lx9 LINE L1 -2181 3666 3501 4 1147 390 21 0 0 chr9 73760953 73761000 -50315172 + (TATG)n Simple_repeat Simple_repeat 2 48 0 4 1147 282 73 0 0 chr9 73761000 73761040 -50315132 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 4 1147 3170 223 52 53 chr9 73761040 73761075 -50315097 - Lx9 LINE L1 -2347 3500 3467 4 1147 207 0 0 0 chr9 73761075 73761098 -50315074 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1147 1193 59 0 0 chr9 73761099 73761234 -50314938 - B1_Mus1 SINE Alu -12 136 2 4 1147 3170 223 52 53 chr9 73761234 73761766 -50314406 - Lx9 LINE L1 -2381 3466 2926 4 1147 3709 190 20 79 chr9 73761767 73762489 -50313683 - Lx9 LINE L1 -3756 2091 1429 4 1147 1198 84 0 0 chr9 73762489 73762631 -50313541 - B1_Mus1 SINE Alu -5 143 2 4 1147 3709 208 93 12 chr9 73762631 73763397 -50312775 - Lx9 LINE L1 -4419 1428 595 4 1147 211 289 60 100 chr9 73763434 73763454 -50312718 - B3A SINE B2 -102 96 1 4 1147 453 225 0 0 chr9 73763454 73763534 -50312638 - B4 SINE B4 -212 80 1 4 1147 606 200 87 0 chr9 73764280 73764395 -50311777 + B3 SINE B2 6 130 -86 4 1147 234 321 192 31 chr9 73764553 73764714 -50311458 - LTR33A_ LTR ERVL -263 268 82 4 1147 998 96 13 0 chr9 73765651 73765807 -50310365 + (TCTCCC)n Simple_repeat Simple_repeat 3 160 0 4 1147 1434 234 90 11 chr9 73765826 73766194 -50309978 + MTD LTR MaLR 10 406 -13 4 1147 630 248 75 0 chr9 73766206 73766339 -50309833 - B3A SINE B2 -55 143 1 4 1147 1827 266 38 11 chr9 73766713 73767188 -50308984 + Lx6 LINE L1 6947 7434 -26 4 1147 1075 224 9 14 chr9 73768378 73768591 -50307581 + B3 SINE B2 1 212 -4 4 1147 619 347 51 17 chr9 73768618 73768973 -50307199 + MLT1A1 LTR MaLR 41 407 -1 4 1147 468 0 0 0 chr9 73769086 73769138 -50307034 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 4 1147 222 37 0 0 chr9 73769138 73769164 -50307008 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1147 769 264 77 0 chr9 73769164 73769346 -50306826 - B3 SINE B2 -13 203 8 4 1147 1104 295 7 11 chr9 73770603 73770884 -50305288 - B4A SINE B4 -9 283 4 4 1147 811 308 114 11 chr9 73772061 73772324 -50303848 + B4A SINE B4 3 292 0 4 1147 807 283 113 106 chr9 73772403 73772734 -50303438 + L1MA7 LINE L1 5352 5716 -571 4 1147 293 196 0 0 chr9 73772734 73772785 -50303387 + B3 SINE B2 86 136 -80 4 1147 591 15 0 0 chr9 73772789 73772857 -50303315 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1147 602 95 11 0 chr9 73772857 73772951 -50303221 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1147 807 283 113 106 chr9 73772951 73773409 -50302763 + L1MA7 LINE L1 5721 6202 -89 4 1147 382 248 39 10 chr9 73773937 73774039 -50302133 - B3 SINE B2 -111 105 1 4 1147 186 43 0 0 chr9 73774271 73774294 -50301878 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1147 344 300 193 26 chr9 73775098 73775403 -50300769 + LFSINE_Vert SINE SINE 80 435 -24 4 1147 1758 119 8 0 chr9 73775702 73775954 -50300218 - L1_Mus3 LINE L1 0 6638 6385 4 1147 265 229 152 24 chr9 73775957 73776082 -50300090 - L1MA7 LINE L1 -30 6282 6142 4 1147 310 276 101 19 chr9 73776344 73776503 -50299669 - L1MA7 LINE L1 -350 5941 5770 4 1147 469 222 154 0 chr9 73776513 73776630 -50299542 + B3 SINE B2 25 159 -57 4 1147 351 0 0 0 chr9 73776632 73776671 -50299501 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1147 870 38 0 0 chr9 73776822 73776928 -50299244 + (CA)n Simple_repeat Simple_repeat 2 107 0 4 1147 36137 48 0 4 chr9 73783354 73788823 -50287349 + L1Md_T LINE L1 43 5589 -297 4 1147 8988 29 2 2 chr9 73788823 73789819 -50286353 + L1Md_T LINE L1 5590 6585 0 4 1147 180 222 0 0 chr9 73789849 73789885 -50286287 - MIRm SINE MIR -2 274 239 4 1147 237 279 126 63 chr9 73790780 73790971 -50285201 + L2c LINE L2 3185 3387 0 4 1147 448 233 56 40 chr9 73791095 73791220 -50284952 + B1F SINE Alu 18 144 -5 4 1147 4179 33 0 0 chr9 73791224 73791710 -50284462 + L1Md_T LINE L1 4373 4858 -1025 4 1147 5379 38 0 0 chr9 73791706 73792400 -50283772 - L1Md_T LINE L1 -350 6232 5539 4 1147 2896 72 6 0 chr9 73792400 73792761 -50283411 + L1Md_T LINE L1 6220 6582 0 4 1147 180 0 0 0 chr9 73792785 73792805 -50283367 + (A)n Simple_repeat Simple_repeat 1 20 0 4 143 6606 18 0 0 chr9 73792805 73793548 -50282624 + L1Md_T LINE L1 4844 5586 -297 4 1148 9119 29 0 0 chr9 73793548 73794543 -50281629 + L1Md_T LINE L1 5587 6581 -1 4 1148 415 282 65 0 chr9 73794618 73794742 -50281430 + Lx8 LINE L1 6967 7098 -375 4 1148 264 59 0 0 chr9 73794759 73794793 -50281379 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1148 28 61 0 0 chr9 73794877 73794926 -50281246 + AT_rich Low_complexity Low_complexity 1 49 0 4 1148 336 356 44 10 chr9 73795132 73795336 -50280836 + MIR SINE MIR 33 243 -19 4 1148 456 19 0 0 chr9 73796026 73796079 -50280093 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1148 52 41 0 0 chr9 73796920 73796993 -50279179 + AT_rich Low_complexity Low_complexity 1 73 0 4 1148 892 281 38 0 chr9 73796994 73797179 -50278993 - B3 SINE B2 -24 192 1 4 1148 860 265 94 43 chr9 73797338 73797614 -50278558 + B4A SINE B4 3 292 0 4 1148 337 333 19 0 chr9 73797666 73797771 -50278401 + PB1D7 SINE Alu 3 109 -11 4 1148 21 0 0 0 chr9 73798414 73798435 -50277737 + AT_rich Low_complexity Low_complexity 1 21 0 4 1148 278 260 108 45 chr9 73798451 73798608 -50277564 - Lx4B LINE L1 -4 7054 6888 4 1148 1096 251 40 92 chr9 73798905 73799305 -50276867 + MTE2a LTR MaLR 1 379 0 5 1148 272 391 114 13 chr9 73800356 73800514 -50275658 + LTR16A LTR ERVL 150 323 -128 5 1148 303 28 0 0 chr9 73800634 73800670 -50275502 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1148 378 0 0 0 chr9 73800680 73800722 -50275450 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1148 379 296 0 0 chr9 73801639 73801720 -50274452 + ID4 SINE ID 2 82 -1 5 1148 38 61 0 0 chr9 73802277 73802343 -50273829 + AT_rich Low_complexity Low_complexity 1 66 0 5 1148 776 238 71 0 chr9 73802364 73802532 -50273640 - B3A SINE B2 -18 180 1 5 1148 423 0 0 0 chr9 73802654 73802701 -50273471 + (T)n Simple_repeat Simple_repeat 1 47 0 5 1148 6005 62 7 10 chr9 73803232 73803959 -50272213 + L1_Mus1 LINE L1 5843 6567 0 5 1148 1496 192 166 14 chr9 73804100 73804444 -50271728 + MTC LTR MaLR 3 398 -23 5 1148 25 0 0 0 chr9 73807069 73807094 -50269078 + AT_rich Low_complexity Low_complexity 1 25 0 5 1148 405 316 18 0 chr9 73807112 73807226 -50268946 - RSINE1 SINE B4 -47 118 3 5 1148 321 93 0 0 chr9 73807913 73807967 -50268205 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 5 1148 183 42 0 0 chr9 73809114 73809138 -50267034 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1148 216 0 0 0 chr9 73809485 73809509 -50266663 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1148 1819 166 97 8 chr9 73809509 73809710 -50266462 - ORR1B1 LTR MaLR -9 385 172 5 1148 393 22 0 0 chr9 73809710 73809756 -50266416 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1148 351 0 0 0 chr9 73809756 73809794 -50266378 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1148 1819 166 97 8 chr9 73809794 73809943 -50266229 - ORR1B1 LTR MaLR -223 171 4 5 1148 357 24 0 0 chr9 73809953 73809995 -50266177 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1148 247 333 57 36 chr9 73810147 73810287 -50265885 - B4 SINE B4 -124 168 26 5 1148 465 279 66 0 chr9 73811256 73811378 -50264794 - B1F SINE Alu -19 130 1 5 1148 514 301 91 14 chr9 73811587 73811806 -50264366 + MER2 DNA MER2_type 100 335 -10 5 1148 360 0 0 0 chr9 73811818 73811858 -50264314 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1148 645 267 79 48 chr9 73812465 73812654 -50263518 + B3A SINE B2 1 195 -3 5 1148 384 22 0 0 chr9 73812731 73812776 -50263396 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1148 718 272 0 0 chr9 73813436 73813583 -50262589 - RSINE1 SINE B4 -17 148 2 5 1148 654 13 0 0 chr9 73815152 73815227 -50260945 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 5 1148 23 68 0 0 chr9 73817115 73817159 -50259013 + AT_rich Low_complexity Low_complexity 1 44 0 5 1148 357 82 0 0 chr9 73817837 73817886 -50258286 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1148 987 276 13 50 chr9 73818137 73818438 -50257734 + B4 SINE B4 2 291 -1 5 1148 235 208 0 0 chr9 73818439 73818487 -50257685 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1148 412 300 7 14 chr9 73819987 73820103 -50256069 - PB1D10 SINE Alu -15 134 18 5 1148 515 314 103 14 chr9 73820558 73820839 -50255333 + MLT1F1 LTR MaLR 125 430 -139 5 1148 333 282 74 0 chr9 73823237 73823400 -50252772 + L1M3 LINE L1 5258 5432 -748 5 1148 629 267 15 0 chr9 73823409 73823540 -50252632 + B1_Mur2 SINE Alu 6 138 -11 5 1148 225 0 0 0 chr9 73823541 73823566 -50252606 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 1148 340 311 68 32 chr9 73823582 73823831 -50252341 + L1M3 LINE L1 5417 5674 -494 5 1148 516 273 136 21 chr9 73824842 73825033 -50251139 - B3 SINE B2 -1 215 3 5 1148 369 0 0 0 chr9 73826168 73826209 -50249963 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1148 228 170 21 0 chr9 73826257 73826304 -50249868 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 5 1148 207 0 0 0 chr9 73826870 73826893 -50249279 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1148 961 241 223 4 chr9 73828146 73828384 -50247788 + B4A SINE B4 3 292 0 5 1148 867 285 5 5 chr9 73829120 73829335 -50246837 + B3 SINE B2 2 216 0 5 1148 388 185 107 36 chr9 73830358 73830470 -50245702 - ORR1C2 LTR MaLR -56 328 209 5 1148 191 146 0 24 chr9 73830477 73830519 -50245653 + CT-rich Low_complexity Low_complexity 2 42 0 5 1148 571 293 139 7 chr9 73831065 73831367 -50244805 + L1MA8 LINE L1 5875 6216 -75 5 1148 518 304 72 106 chr9 73831410 73831741 -50244431 - MER2 DNA MER2_type -24 321 2 5 1148 743 218 57 44 chr9 73831881 73832160 -50244012 + ORR1D1 LTR MaLR 9 365 -9 5 1148 945 107 0 0 chr9 73832160 73832300 -50243872 + (GAGAA)n Simple_repeat Simple_repeat 4 143 0 5 1148 387 0 0 0 chr9 73832802 73832845 -50243327 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1148 25 75 0 0 chr9 73834090 73834143 -50242029 + AT_rich Low_complexity Low_complexity 1 53 0 5 1148 1135 274 46 47 chr9 73834839 73835227 -50240945 - MTE2a LTR MaLR -12 407 18 5 1148 1891 208 37 11 chr9 73836236 73836587 -50239585 + MTD LTR MaLR 58 417 -2 5 1148 1131 120 176 5 chr9 73836979 73837172 -50239000 - URR1A DNA MER1_type 0 226 1 5 1148 815 280 53 0 chr9 73837540 73837729 -50238443 - B4 SINE B4 -8 284 86 5 1148 1418 216 86 68 chr9 73838884 73839361 -50236811 - RMER6C LTR ERVK -13 743 386 5 1148 351 0 0 0 chr9 73839361 73839400 -50236772 + (CACTG)n Simple_repeat Simple_repeat 2 40 0 5 1148 1418 202 106 57 chr9 73839400 73839569 -50236603 - RMER6C LTR ERVK -279 411 208 5 1148 7995 86 3 2 chr9 73839595 73840714 -50235458 + L1_Mus3 LINE L1 5511 6631 -7 5 1148 618 152 120 70 chr9 73840729 73840871 -50235301 - RMER6C LTR ERVK -541 149 1 5 1148 606 315 22 6 chr9 73842639 73842818 -50233354 - B3A SINE B2 -15 183 2 5 1148 200 100 25 0 chr9 73843321 73843361 -50232811 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 5 1148 619 273 7 34 chr9 73843363 73843511 -50232661 - B1_Mur2 SINE Alu 0 149 6 5 1148 621 258 29 41 chr9 73843522 73843546 -50232626 - B3A SINE B2 0 198 176 5 1148 378 0 0 0 chr9 73843546 73843588 -50232584 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1148 621 258 29 41 chr9 73843588 73843733 -50232439 - B3A SINE B2 -23 175 31 5 1148 468 0 0 0 chr9 73844024 73844076 -50232096 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1148 236 315 46 0 chr9 73844077 73844185 -50231987 + L3b LINE CR1 186 298 -184 5 1148 818 246 28 28 chr9 73844292 73844472 -50231700 + B3 SINE B2 1 180 -36 5 1148 314 45 0 22 chr9 73844669 73844714 -50231458 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 5 1148 691 251 47 12 chr9 73845221 73845390 -50230782 + B3A SINE B2 2 176 -22 5 1148 584 194 129 45 chr9 73845688 73845790 -50230382 + RLTR40 LTR ERVK 1 105 -712 5 1148 1333 170 9 30 chr9 73845790 73846020 -50230152 - URR1B DNA MER1_type 0 225 1 5 1148 584 194 129 45 chr9 73846020 73846095 -50230077 + RLTR40 LTR ERVK 106 193 -624 5 1148 186 333 87 0 chr9 73847254 73847323 -50228849 + L2c LINE L2 3295 3369 -18 5 1148 327 128 15 6 chr9 73847539 73847601 -50228571 - MT2B LTR ERVL 0 601 489 5 1148 522 0 0 0 chr9 73847601 73847659 -50228513 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1148 1061 240 189 24 chr9 73847662 73847995 -50228177 - MT2B LTR ERVL -213 388 1 5 1148 186 128 0 0 chr9 73848428 73848467 -50227705 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 1148 276 137 0 0 chr9 73848505 73848556 -50227616 + (CCA)n Simple_repeat Simple_repeat 2 52 0 5 1148 328 294 118 52 chr9 73848879 73849091 -50227081 + MIR SINE MIR 14 239 -23 5 1148 257 109 0 18 chr9 73851303 73851359 -50224813 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1148 830 276 10 20 chr9 73851932 73852132 -50224040 + B3A SINE B2 1 198 0 5 1148 1034 187 24 19 chr9 73852963 73853176 -50222996 - URR1A DNA MER1_type -6 220 7 5 1148 1238 82 0 0 chr9 73853185 73853332 -50222840 + B1_Mus1 SINE Alu 1 147 -1 5 1148 348 283 0 0 chr9 73853952 73854058 -50222114 + A-rich Low_complexity Low_complexity 1 106 0 5 1148 388 0 19 19 chr9 73854529 73854582 -50221590 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1148 825 255 81 12 chr9 73854622 73854880 -50221292 - B4A SINE B4 -16 276 1 5 1148 465 248 126 15 chr9 73857584 73857719 -50218453 + B3A SINE B2 1 150 -48 5 1148 288 0 0 0 chr9 73857726 73857758 -50218414 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1148 597 14 0 0 chr9 73857760 73857830 -50218342 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 1148 189 0 0 0 chr9 73858518 73858539 -50217633 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1148 778 237 10 64 chr9 73858542 73858745 -50217427 + B3A SINE B2 7 198 0 5 1148 494 230 0 0 chr9 73859321 73859408 -50216764 + B3 SINE B2 1 87 -129 5 1148 23 68 0 0 chr9 73859476 73859520 -50216652 + AT_rich Low_complexity Low_complexity 1 44 0 5 1148 225 300 130 43 chr9 73861631 73861746 -50214426 + PB1 SINE Alu 1 125 -2 5 1148 227 293 17 0 chr9 73861759 73861817 -50214355 + ID2 SINE ID 5 63 -20 5 1148 420 71 0 0 chr9 73861939 73861995 -50214177 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1148 180 286 70 14 chr9 73862719 73862790 -50213382 + L4 LINE RTE 185 259 -1770 5 1148 448 291 89 25 chr9 73863716 73863919 -50212253 + L1MA4 LINE L1 5714 5929 -371 5 1148 2085 93 56 13 chr9 73865140 73865446 -50210726 - ORR1A2 LTR MaLR -8 319 1 5 1148 733 285 44 24 chr9 73866121 73866326 -50209846 + B3 SINE B2 6 214 -2 5 1148 547 302 34 28 chr9 73866802 73866979 -50209193 - B3 SINE B2 -10 206 29 5 1148 286 252 45 27 chr9 73866982 73867092 -50209080 - L1MC3 LINE L1 -98 7687 7576 5 1148 830 278 40 77 chr9 73867119 73867443 -50208729 - MTEa LTR MaLR -15 364 53 5 1148 355 247 0 0 chr9 73867447 73867520 -50208652 - MTEa LTR MaLR -287 92 20 5 1148 911 314 63 29 chr9 73867550 73868098 -50208074 - L1MC3 LINE L1 -235 7647 6990 5 1148 301 158 0 38 chr9 73868098 73868177 -50207995 + (CATA)n Simple_repeat Simple_repeat 4 79 0 6 1148 339 196 18 18 chr9 73868242 73868351 -50207821 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 6 1148 225 348 56 11 chr9 73868478 73868658 -50207514 - L1M2 LINE L1 -3812 2331 2144 6 1148 405 39 0 0 chr9 73870743 73870794 -50205378 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1148 270 0 0 0 chr9 73870796 73870826 -50205346 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1148 202 293 81 81 chr9 73871638 73871798 -50204374 + MIRb SINE MIR 93 252 -16 6 1148 3036 44 9 0 chr9 73875333 73875676 -50200496 - ORR1A1 LTR MaLR 0 346 1 6 1148 581 300 33 16 chr9 73875825 73876008 -50200164 - B3A SINE B2 -10 188 3 6 1148 929 201 68 16 chr9 73876592 73876784 -50199388 - B3 SINE B2 -5 211 10 6 1148 207 0 0 0 chr9 73876888 73876911 -50199261 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 6 1148 370 240 76 76 chr9 73877472 73877485 -50198687 - CYRA11_Mm Unknown Y-chromosome -269 348 248 6 1148 947 127 18 43 chr9 73877485 73877649 -50198523 + URR1A DNA MER1_type 67 226 0 6 1148 4849 62 3 15 chr9 73877665 73878266 -50197906 + L1Md_F2 LINE L1 5989 6582 0 6 1148 27 81 0 0 chr9 73879276 73879338 -50196834 + AT_rich Low_complexity Low_complexity 1 62 0 6 1148 976 249 21 0 chr9 73879455 73879648 -50196524 + B3 SINE B2 3 199 -17 6 1148 2064 218 25 0 chr9 73879655 73880059 -50196113 + MTD LTR MaLR 6 419 0 6 1148 542 276 37 0 chr9 73880224 73880358 -50195814 + ID_B1 SINE B4 84 222 -2 6 1148 757 128 76 0 chr9 73880869 73881012 -50195160 + B3A SINE B2 1 151 -65 6 1148 236 267 172 32 chr9 73881000 73881093 -50195079 + MLT1B LTR MaLR 259 364 -26 6 1148 604 254 72 0 chr9 73881320 73881458 -50194714 - B3 SINE B2 -67 149 2 6 1148 313 341 81 35 chr9 73881996 73882254 -50193918 - LTR16C LTR ERVL -21 468 199 6 1148 444 255 43 43 chr9 73883047 73883162 -50193010 - PB1D10 SINE Alu 0 117 3 6 1148 240 354 20 0 chr9 73883165 73883264 -50192908 + MLT-int LTR MaLR 1620 1720 -15 6 1148 246 316 41 21 chr9 73883310 73883407 -50192765 + MLT1A LTR MaLR 64 162 -212 6 1148 462 36 0 0 chr9 73883999 73884055 -50192117 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1148 251 250 14 81 chr9 73884055 73884129 -50192043 - ID4 SINE ID -14 69 1 6 1148 5442 154 6 35 chr9 73884448 73885343 -50190829 - Lx LINE L1 -3 6651 5783 6 1148 28722 36 5 13 chr9 73885343 73891507 -50184665 - L1Md_A LINE L1 -5 6577 478 6 1148 286 329 35 92 chr9 73891538 73891712 -50184460 + RSINE1 SINE B4 2 165 0 6 1148 1069 97 45 6 chr9 73891965 73892121 -50184051 + B2_Mm2 SINE B2 2 163 -32 6 1148 1027 226 14 14 chr9 73892355 73892562 -50183610 + B3 SINE B2 2 208 -8 6 1148 306 245 0 0 chr9 73892585 73892638 -50183534 + RSINE1 SINE B4 4 56 -109 6 1148 384 22 0 0 chr9 73892687 73892732 -50183440 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1148 210 354 0 35 chr9 73893130 73893156 -50183016 - ID4 SINE ID 0 83 2 6 1148 218 271 17 0 chr9 73893156 73893215 -50182957 - ID SINE ID -163 61 2 6 1148 894 284 5 9 chr9 73893245 73893462 -50182710 + B3 SINE B2 1 216 0 6 1148 663 154 0 0 chr9 73894024 73894160 -50182012 + (TG)n Simple_repeat Simple_repeat 2 137 0 6 1148 1278 41 0 13 chr9 73894205 73894354 -50181818 - B1_Mus2 SINE Alu 0 147 1 6 1148 377 188 0 0 chr9 73894660 73894724 -50181448 + B1F SINE Alu 78 141 -8 6 1148 541 277 58 7 chr9 73894851 73894989 -50181183 - RSINE1 SINE B4 -18 147 3 6 1148 999 267 133 0 chr9 73894996 73895311 -50180861 + MTEa LTR MaLR 22 378 -1 6 1148 1039 195 24 19 chr9 73895454 73895663 -50180509 + B3 SINE B2 7 216 0 6 1148 261 0 0 0 chr9 73895911 73895940 -50180232 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 1148 324 0 0 0 chr9 73895940 73895975 -50180197 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1148 939 226 48 14 chr9 73897233 73897440 -50178732 - B3 SINE B2 0 216 3 6 1148 306 335 92 63 chr9 73898483 73898865 -50177307 + L1MEc LINE L1 679 1071 -5329 6 1148 381 197 40 0 chr9 73898876 73898952 -50177220 + ID4_ SINE ID 2 80 -3 6 1148 635 246 14 145 chr9 73899028 73899242 -50176930 + B3A SINE B2 1 186 -30 6 1148 365 286 136 24 chr9 73899272 73899522 -50176650 + L1MEc LINE L1 1275 1552 -4863 6 1148 2899 63 11 14 chr9 73899633 73900002 -50176170 + L1Md_F2 LINE L1 6203 6570 -12 6 1148 443 266 18 9 chr9 73900023 73900133 -50176039 - B3A SINE B2 -24 174 64 6 1148 274 288 0 0 chr9 73900771 73900830 -50175342 - Charlie12 DNA MER1_type -3 2870 2812 6 1148 247 320 121 53 chr9 73901172 73901304 -50174868 - ORR1E LTR MaLR -218 141 1 6 1148 255 314 55 34 chr9 73901639 73901876 -50174296 + L1MEc LINE L1 2760 3001 -3318 6 1148 21 57 0 0 chr9 73901939 73901974 -50174198 + AT_rich Low_complexity Low_complexity 1 35 0 6 1148 278 321 52 69 chr9 73902024 73902315 -50173857 + L1MEc LINE L1 3219 3504 -2815 6 1148 1368 90 45 0 chr9 73902817 73902995 -50173177 + B2_Mm2 SINE B2 2 187 -8 6 1148 25 0 0 0 chr9 73902995 73903020 -50173152 + AT_rich Low_complexity Low_complexity 1 25 0 6 1148 364 229 103 35 chr9 73903292 73903437 -50172735 + RMER30 DNA MER1_type 11 165 -37 6 1148 390 127 0 54 chr9 73903898 73903964 -50172208 + G-rich Low_complexity Low_complexity 2 66 0 6 1148 1085 96 0 22 chr9 73903964 73904146 -50172026 + (TGGGGG)n Simple_repeat Simple_repeat 1 178 0 6 1148 390 127 0 54 chr9 73904146 73904171 -50172001 + G-rich Low_complexity Low_complexity 67 88 0 6 1148 1094 95 0 22 chr9 73904173 73904356 -50171816 + (TGGGGG)n Simple_repeat Simple_repeat 1 179 0 6 1148 322 263 145 44 chr9 73905067 73905226 -50170946 + MER67A LTR ERV1 85 259 -284 6 1148 260 344 80 45 chr9 73905956 73906157 -50170015 + MIRb SINE MIR 3 210 -58 6 1148 1102 123 87 12 chr9 73906805 73906977 -50169195 - B2_Mm1t SINE B2 -8 185 1 6 1148 928 132 0 0 chr9 73907145 73907266 -50168906 + 5S rRNA rRNA 1 121 0 6 1148 207 0 0 0 chr9 73907276 73907299 -50168873 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1148 523 164 58 26 chr9 73907553 73907905 -50168267 + (TCTA)n Simple_repeat Simple_repeat 1 363 0 6 1148 242 104 0 143 chr9 73908017 73908051 -50168121 + L1Md_F2 LINE L1 6131 6163 -419 6 1148 2021 50 0 0 chr9 73908051 73908289 -50167883 + L1Md_F2 LINE L1 6344 6581 -1 6 1148 242 104 0 143 chr9 73908289 73908310 -50167862 + L1Md_F2 LINE L1 6164 6178 -404 6 1148 3002 75 33 18 chr9 73908656 73909050 -50167122 + MTB LTR MaLR 1 400 0 6 1148 286 203 14 88 chr9 73909091 73909185 -50166987 - Lx7 LINE L1 -532 5771 5672 6 1148 444 303 91 43 chr9 73909176 73909528 -50166644 + L1M2 LINE L1 4268 4636 -1507 6 1148 1278 273 56 3 chr9 73910090 73910450 -50165722 - MTEa LTR MaLR 0 379 1 6 1148 773 207 20 27 chr9 73910677 73910826 -50165346 + B3A SINE B2 1 148 -50 6 1148 1398 81 0 0 chr9 73910827 73911332 -50164840 + (CA)n Simple_repeat Simple_repeat 1 505 0 6 1148 23 0 0 0 chr9 73911338 73911361 -50164811 + AT_rich Low_complexity Low_complexity 1 23 0 6 1148 2592 131 25 15 chr9 73911644 73912040 -50164132 - Lx4A LINE L1 -1 7057 6658 6 1148 226 309 144 33 chr9 73912896 73913077 -50163095 + L2b LINE L2 3158 3358 -17 6 1148 26 30 0 0 chr9 73913883 73913916 -50162256 + AT_rich Low_complexity Low_complexity 1 33 0 6 1148 620 265 51 74 chr9 73913930 73913952 -50162220 + B3 SINE B2 2 20 -196 6 1148 1463 159 9 0 chr9 73913952 73914172 -50162000 + URR1A DNA MER1_type 1 222 -4 6 1148 620 265 51 74 chr9 73914172 73914365 -50161807 + B3 SINE B2 21 212 -4 6 1148 736 263 59 59 chr9 73916478 73916700 -50159472 + B4 SINE B4 1 222 -70 6 1148 1061 79 0 7 chr9 73916565 73916705 -50159467 + B1_Mm SINE Alu 9 147 0 6 1148 498 343 32 18 chr9 73916715 73916935 -50159237 + B4A SINE B4 70 292 0 6 1148 261 57 0 0 chr9 73916992 73917027 -50159145 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1148 894 170 7 7 chr9 73917782 73917930 -50158242 - B1_Mur4 SINE Alu -1 149 2 6 1148 919 151 23 13 chr9 73917971 73918274 -50157898 + CT-rich Low_complexity Low_complexity 1 306 0 6 1148 435 253 18 12 chr9 73918286 73918450 -50157722 + CT-rich Low_complexity Low_complexity 1 165 0 6 1148 312 83 0 0 chr9 73918450 73918498 -50157674 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1148 433 368 22 0 chr9 73918515 73918651 -50157521 - RSINE1 SINE B4 -19 146 8 6 1148 402 242 21 10 chr9 73918695 73918791 -50157381 - PB1D9 SINE Alu -1 119 23 6 1148 1647 191 27 0 chr9 73919700 73919993 -50156179 - ORR1D1 LTR MaLR -30 344 44 6 1148 3551 221 113 38 chr9 73920012 73920959 -50155213 - Lx2B LINE L1 -4 6996 5979 6 1148 234 250 33 0 chr9 73920961 73921021 -50155151 - ORR1D1 LTR MaLR -312 62 1 6 1148 1904 194 88 35 chr9 73921230 73921569 -50154603 - MTC LTR MaLR 0 421 55 6 1148 2081 133 6 115 chr9 73921569 73921935 -50154237 - ORR1A4 LTR MaLR -3 326 1 6 1148 1904 194 88 35 chr9 73921935 73921995 -50154177 - MTC LTR MaLR -367 54 1 6 1148 850 176 186 6 chr9 73922290 73922473 -50153699 + B3 SINE B2 1 216 0 6 1148 354 306 72 7 chr9 73922537 73922675 -50153497 + RSINE1 SINE B4 2 148 -17 6 1148 399 338 112 38 chr9 73924085 73924374 -50151798 - L1MC4 LINE L1 -862 7180 6868 6 1148 369 0 0 0 chr9 73924374 73924415 -50151757 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1148 399 338 112 38 chr9 73924415 73924491 -50151681 - L1MC4 LINE L1 -1175 6867 6790 6 1149 255 202 89 20 chr9 73924611 73924712 -50151460 + L1MA10 LINE L1 6216 6323 -11 6 1149 540 143 17 8 chr9 73924716 73924800 -50151372 + polypurine Low_complexity Low_complexity 2 86 0 6 1149 2157 134 102 16 chr9 73924800 73925163 -50151009 + ORR1B1 LTR MaLR 1 394 0 6 1149 540 143 17 8 chr9 73925163 73925198 -50150974 + polypurine Low_complexity Low_complexity 87 121 0 7 1149 2904 69 10 3 chr9 73925584 73925975 -50150197 + MTB LTR MaLR 1 394 -6 7 1149 1074 192 76 9 chr9 73926669 73926879 -50149293 - URR1B DNA MER1_type -1 224 1 7 1149 3706 23 0 5 chr9 73927012 73927410 -50148762 - MTA_Mm LTR MaLR 0 396 1 7 1149 192 362 38 49 chr9 73927465 73927648 -50148524 - L2 LINE L2 -405 3014 2834 7 1149 404 256 23 0 chr9 73927759 73927931 -50148241 + GA-rich Low_complexity Low_complexity 4 179 0 7 1149 252 250 0 0 chr9 73927971 73928043 -50148129 + A-rich Low_complexity Low_complexity 1 72 0 7 1149 259 250 20 30 chr9 73929681 73929780 -50146392 - L1MC LINE L1 -446 5887 5790 7 1149 432 0 0 0 chr9 73929879 73929927 -50146245 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1149 882 295 181 21 chr9 73930065 73930793 -50145379 - L1MC LINE L1 -985 5161 4317 7 1149 26732 72 10 6 chr9 73930800 73934993 -50141179 - L1Md_F2 LINE L1 0 6582 2380 7 1149 1167 101 0 12 chr9 73935088 73935258 -50140914 + B2_Mm2 SINE B2 3 170 -25 7 1149 1133 301 94 66 chr9 73935320 73935865 -50140307 - L1MC LINE L1 -1907 4239 3703 7 1149 3844 25 69 18 chr9 73935865 73936317 -50139855 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1149 1133 301 94 66 chr9 73936317 73937053 -50139119 - L1MC LINE L1 -2444 3702 2922 7 1149 644 301 44 19 chr9 73937159 73937314 -50138858 - L1MC LINE L1 -3384 2762 2604 7 1149 288 0 0 0 chr9 73937314 73937346 -50138826 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1149 644 301 44 19 chr9 73937346 73937505 -50138667 - L1MC LINE L1 -3543 2603 2441 7 1149 259 243 40 0 chr9 73938057 73938131 -50138041 - L1MC5 LINE L1 -918 7043 6967 7 1149 1209 314 70 42 chr9 73938323 73938912 -50137260 + RLTR18 LTR ERVK 9 613 -3 7 1149 308 284 12 0 chr9 73938931 73939012 -50137160 - L1MC5 LINE L1 -1143 6818 6737 7 1149 1264 250 72 46 chr9 73939213 73939561 -50136611 + ORR1E LTR MaLR 1 357 -2 7 1149 276 149 0 0 chr9 73940040 73940087 -50136085 + (CAA)n Simple_repeat Simple_repeat 2 48 0 7 1149 225 0 0 0 chr9 73940832 73940857 -50135315 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7 1149 1246 57 0 0 chr9 73940862 73941003 -50135169 - B1_Mus2 SINE Alu -5 142 2 7 1149 423 0 0 0 chr9 73941123 73941170 -50135002 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1149 332 335 67 64 chr9 73941641 73941938 -50134234 + Lx8 LINE L1 7155 7452 -21 7 1149 40 21 0 0 chr9 73942009 73942056 -50134116 + AT_rich Low_complexity Low_complexity 1 47 0 7 1149 477 0 0 0 chr9 73942361 73942414 -50133758 + (TAA)n Simple_repeat Simple_repeat 2 54 0 7 1149 216 0 0 0 chr9 73942590 73942614 -50133558 + (TAA)n Simple_repeat Simple_repeat 2 25 0 7 1149 565 288 14 28 chr9 73944174 73944317 -50131855 + B3A SINE B2 2 142 -56 7 1149 531 101 0 0 chr9 73944322 73944401 -50131771 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1149 405 0 0 0 chr9 73944401 73944445 -50131727 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1149 17726 194 92 52 chr9 73944623 73946231 -50129941 + L1_Mur3 LINE L1 370 2043 -3837 7 1149 792 0 0 0 chr9 73946231 73946319 -50129853 + (GAA)n Simple_repeat Simple_repeat 1 88 0 7 1149 17726 156 43 23 chr9 73946319 73948481 -50127691 + L1_Mur3 LINE L1 2044 4282 -1598 7 1149 396 0 0 0 chr9 73948481 73948525 -50127647 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1149 17726 156 43 23 chr9 73948525 73948941 -50127231 + L1_Mur3 LINE L1 4283 4676 -1204 7 1149 32 67 0 0 chr9 73949189 73949249 -50126923 + AT_rich Low_complexity Low_complexity 1 60 0 7 1149 580 119 46 0 chr9 73950088 73950197 -50125975 + L1Md_F2 LINE L1 6456 6569 -13 7 1149 201 74 0 0 chr9 73950205 73950232 -50125940 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1149 595 243 130 40 chr9 73950349 73950649 -50125523 + RLTR15 LTR ERVK 1 327 -32 7 1149 1005 257 61 96 chr9 73950762 73951137 -50125035 - MTE2a LTR MaLR -17 362 1 7 1149 235 201 0 3 chr9 73952120 73952159 -50124013 + PB1 SINE Alu 28 65 -52 7 1149 560 321 68 1 chr9 73952913 73953148 -50123024 - L1ME1 LINE L1 -199 5980 5729 7 1149 527 250 17 25 chr9 73953171 73953290 -50122882 + B3 SINE B2 4 121 -95 7 1149 316 274 3 0 chr9 73953303 73953380 -50122792 + B3 SINE B2 22 100 -98 7 1149 207 0 0 0 chr9 73953822 73953845 -50122327 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 1149 1058 96 15 0 chr9 73953846 73953981 -50122191 - B1_Mus2 SINE Alu -10 137 1 7 1149 937 271 10 5 chr9 73954138 73954346 -50121826 + B3 SINE B2 1 209 -7 7 1149 23 0 0 0 chr9 73954355 73954378 -50121794 + AT_rich Low_complexity Low_complexity 1 23 0 7 1149 701 293 0 12 chr9 73954828 73954994 -50121178 + RSINE1 SINE B4 1 164 -1 7 1149 286 354 66 30 chr9 73955565 73955763 -50120409 - MER92B LTR ERV1 -266 370 166 7 1149 306 299 27 36 chr9 73955788 73955899 -50120273 + PB1D7 SINE Alu 2 111 -9 7 1149 215 194 0 0 chr9 73957657 73957693 -50118479 + C-rich Low_complexity Low_complexity 1 36 0 7 1149 511 272 139 16 chr9 73957696 73957883 -50118289 - B4 SINE B4 -81 211 2 7 1149 751 264 78 45 chr9 73958923 73959059 -50117113 - Lx8 LINE L1 -2 7471 7336 7 1149 212 0 36 0 chr9 73959059 73959087 -50117085 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1149 751 264 78 45 chr9 73959087 73959259 -50116913 - Lx8 LINE L1 -138 7335 7154 7 1149 312 91 0 0 chr9 73959334 73959378 -50116794 + (TCC)n Simple_repeat Simple_repeat 2 45 0 7 1149 23 0 0 0 chr9 73959851 73959874 -50116298 + AT_rich Low_complexity Low_complexity 1 23 0 7 1149 1812 21 0 0 chr9 73959987 73960178 -50115994 + B2_Mm1a SINE B2 1 191 -2 7 1149 255 31 0 0 chr9 73960331 73960363 -50115809 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1149 225 261 177 34 chr9 73960590 73960737 -50115435 + MIR SINE MIR 83 250 -12 7 1149 624 222 21 78 chr9 73960763 73960954 -50115218 + B3A SINE B2 17 196 -2 7 1149 360 0 0 0 chr9 73961713 73961753 -50114419 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1149 333 0 0 0 chr9 73962070 73962107 -50114065 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1149 943 284 88 22 chr9 73962114 73962388 -50113784 - B4A SINE B4 0 292 1 7 1149 258 125 0 0 chr9 73962552 73962600 -50113572 + (TTTTTG)n Simple_repeat Simple_repeat 4 51 0 7 1149 310 274 14 0 chr9 73962601 73962674 -50113498 - B4A SINE B4 -61 231 158 7 1149 243 79 0 0 chr9 73963485 73963523 -50112649 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 7 1149 28 0 0 0 chr9 73963556 73963584 -50112588 + AT_rich Low_complexity Low_complexity 1 28 0 7 1149 191 271 21 0 chr9 73964720 73964768 -50111404 + MIRb SINE MIR 32 80 -188 7 1149 560 254 26 0 chr9 73965084 73965198 -50110974 + RSINE1 SINE B4 8 124 -41 7 1149 405 0 0 0 chr9 73965199 73965244 -50110928 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1149 468 150 0 0 chr9 73965245 73965325 -50110847 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 1149 1425 29 0 0 chr9 73965325 73965499 -50110673 + (GGGAGA)n Simple_repeat Simple_repeat 3 176 0 7 1149 551 276 25 44 chr9 73965501 73965660 -50110512 + B4 SINE B4 119 274 -18 7 1149 1305 132 98 5 chr9 73965834 73966039 -50110133 + URR1B DNA MER1_type 1 224 -1 7 1149 703 285 9 119 chr9 73967113 73967332 -50108840 - B3A SINE B2 -3 195 1 7 1149 285 319 0 62 chr9 73967360 73967457 -50108715 + PB1D10 SINE Alu 1 91 -26 7 1149 439 242 101 0 chr9 73967384 73967483 -50108689 + ID_B1 SINE B4 100 208 -16 7 1149 27 0 0 0 chr9 73967732 73967759 -50108413 + AT_rich Low_complexity Low_complexity 1 27 0 7 1149 196 341 91 0 chr9 73968096 73968184 -50107988 - L3 LINE CR1 -2780 1709 1614 7 1149 362 303 36 27 chr9 73968255 73968367 -50107805 + B3A SINE B2 76 188 -10 7 1149 204 40 0 0 chr9 73968530 73968555 -50107617 + (CAA)n Simple_repeat Simple_repeat 3 27 0 7 1149 703 203 167 68 chr9 73969102 73969366 -50106806 - Lx7 LINE L1 0 7696 7407 7 1149 2395 178 54 40 chr9 73969371 73969893 -50106279 - L1_Mur3 LINE L1 -1394 4486 3958 7 1149 225 111 0 0 chr9 73970719 73970755 -50105417 - L1MB8 LINE L1 -46 6132 6097 7 1149 438 20 0 0 chr9 73971428 73971479 -50104693 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1149 756 0 0 0 chr9 73971484 73971568 -50104604 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 7 1149 263 290 20 20 chr9 73971654 73971756 -50104416 + MIRc SINE MIR 46 147 -121 7 1149 1059 293 96 24 chr9 73971945 73972319 -50103853 + MTD LTR MaLR 6 406 -13 7 1149 275 228 76 0 chr9 73972328 73972407 -50103765 - MER53 DNA hAT -102 91 7 7 1149 215 204 45 0 chr9 73972638 73972682 -50103490 - L2b LINE L2 -2 3373 3328 7 1149 276 30 0 0 chr9 73972956 73972989 -50103183 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 7 1149 306 194 0 0 chr9 73973120 73973187 -50102985 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1149 706 259 36 31 chr9 73973195 73973390 -50102782 - B3A SINE B2 -14 202 7 7 1149 216 0 0 0 chr9 73974158 73974182 -50101990 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1149 270 0 0 0 chr9 73974420 73974450 -50101722 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 1149 22 0 0 0 chr9 73974891 73974913 -50101259 + AT_rich Low_complexity Low_complexity 1 22 0 7 1149 679 293 38 14 chr9 73974919 73975130 -50101042 - B3 SINE B2 0 216 1 7 1149 428 325 63 26 chr9 73975470 73975773 -50100399 - L1M5 LINE L1 -2989 3157 2844 7 1149 585 235 91 7 chr9 73976021 73976159 -50100013 + B3 SINE B2 10 156 -60 7 1149 198 0 0 0 chr9 73976159 73976181 -50099991 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1149 585 277 61 6 chr9 73976181 73976222 -50099950 + B3 SINE B2 152 195 -3 7 1149 11042 55 6 2 chr9 73976380 73978456 -50097716 - L1Md_F2 LINE L1 -1 6581 4493 7 1149 10618 60 19 8 chr9 73978457 73979852 -50096320 + L1Md_F2 LINE L1 3032 4442 -1441 7 1149 946 249 51 69 chr9 73980069 73980434 -50095738 - MTD LTR MaLR -14 405 62 7 1149 188 238 16 0 chr9 73980515 73980578 -50095594 + G-rich Low_complexity Low_complexity 3 66 0 7 1149 332 281 11 11 chr9 73980598 73980688 -50095484 - PB1D10 SINE Alu -27 90 1 7 1149 248 70 0 23 chr9 73980695 73980739 -50095433 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 8 1149 605 276 9 97 chr9 73981147 73981259 -50094913 + B3A SINE B2 1 106 -92 8 1149 1797 26 0 0 chr9 73981259 73981452 -50094720 - B2_Mm1a SINE B2 0 193 1 8 1149 605 276 9 97 chr9 73981452 73981556 -50094616 + B3A SINE B2 107 198 0 8 1149 703 301 79 26 chr9 73981657 73982036 -50094136 - L1ME1 LINE L1 -212 5967 5569 8 1149 395 262 47 28 chr9 73982068 73982174 -50093998 - ID_B1 SINE B4 -38 186 79 8 1149 23 33 0 0 chr9 73983315 73983345 -50092827 + AT_rich Low_complexity Low_complexity 1 30 0 8 1149 378 311 19 9 chr9 73983662 73983769 -50092403 + MER20 DNA MER1_type 2 109 -110 8 1149 1184 198 146 31 chr9 73984171 73984502 -50091670 - ORR1D1 LTR MaLR -8 318 1 8 1149 561 271 88 11 chr9 73985040 73985231 -50090941 - B3A SINE B2 -10 206 8 8 1149 1593 223 80 25 chr9 73985629 73986003 -50090169 - MTD LTR MaLR 0 419 20 8 1149 3167 45 47 8 chr9 73986003 73986384 -50089788 - MTA_Mm LTR MaLR 0 396 1 8 1149 246 131 14 141 chr9 73986384 73986406 -50089766 - MTD LTR MaLR -359 20 1 8 1149 886 288 73 23 chr9 73986536 73986973 -50089199 - L1MC1 LINE L1 -255 6078 5620 8 1149 282 293 0 26 chr9 73986976 73987053 -50089119 - PB1D10 SINE Alu -38 79 5 8 1149 22 0 0 0 chr9 73987343 73987365 -50088807 + AT_rich Low_complexity Low_complexity 1 22 0 8 1149 26 0 0 0 chr9 73987387 73987413 -50088759 + AT_rich Low_complexity Low_complexity 1 26 0 8 1149 245 245 0 0 chr9 73987795 73987844 -50088328 + B4A SINE B4 229 277 -15 8 1149 408 271 31 0 chr9 73987836 73987932 -50088240 + ID_B1 SINE B4 67 165 -59 8 1149 266 300 0 0 chr9 73988070 73988130 -50088042 + B4A SINE B4 221 280 -12 8 1149 237 257 27 0 chr9 73988321 73988395 -50087777 + L1MEe LINE L1 971 1046 -3808 8 1149 181 323 78 29 chr9 73988585 73988687 -50087485 - MER5A DNA MER1_type -26 163 57 8 1149 744 278 19 67 chr9 73989028 73989236 -50086936 + B3A SINE B2 1 198 0 8 1149 311 321 80 0 chr9 73989770 73989882 -50086290 - MER20 DNA MER1_type -12 207 87 8 1149 29 0 0 0 chr9 73990041 73990070 -50086102 + AT_rich Low_complexity Low_complexity 1 29 0 8 1149 318 50 0 0 chr9 73990358 73990398 -50085774 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1149 552 180 12 6 chr9 73990723 73990885 -50085287 + GA-rich Low_complexity Low_complexity 1 163 0 8 1149 345 75 0 0 chr9 73991713 73991766 -50084406 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1149 524 274 89 6 chr9 73991788 73991946 -50084226 + B3A SINE B2 1 171 -27 8 1149 288 111 0 0 chr9 73993336 73993390 -50082782 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1149 180 77 0 0 chr9 73993390 73993416 -50082756 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1149 22 0 0 0 chr9 73993834 73993856 -50082316 + AT_rich Low_complexity Low_complexity 1 22 0 8 1149 23 0 0 0 chr9 73994041 73994064 -50082108 + AT_rich Low_complexity Low_complexity 1 23 0 8 1149 705 289 54 0 chr9 73995098 73995302 -50080870 + B3 SINE B2 2 216 0 8 1149 225 0 0 0 chr9 73997119 73997144 -50079028 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1149 228 35 0 0 chr9 73997611 73997640 -50078532 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1149 966 140 228 0 chr9 73997921 73998092 -50078080 + B3 SINE B2 1 210 -6 8 1149 183 250 0 0 chr9 73998759 73998811 -50077361 + (TATG)n Simple_repeat Simple_repeat 4 55 0 8 1149 405 0 0 0 chr9 73999096 73999141 -50077031 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1149 433 239 11 64 chr9 73999574 73999668 -50076504 - B1_Mur3 SINE Alu -60 89 1 8 1149 680 255 30 54 chr9 73999690 73999893 -50076279 - B3A SINE B2 0 198 1 8 1149 293 62 21 0 chr9 74000040 74000088 -50076084 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1 1149 252 225 0 0 chr9 74001508 74001548 -50074624 - ID SINE ID -146 78 39 2 1149 193 333 0 62 chr9 74002344 74002424 -50073748 + MIR3 SINE MIR 108 182 -26 3 1149 536 182 17 22 chr9 74003875 74004055 -50072117 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1149 24 32 0 0 chr9 74004402 74004433 -50071739 + AT_rich Low_complexity Low_complexity 1 31 0 5 1149 791 301 32 0 chr9 74006021 74006207 -50069965 - B3 SINE B2 -23 193 2 6 1149 240 376 92 7 chr9 74006255 74006397 -50069775 + MIR SINE MIR 1 154 -108 7 1149 657 25 0 0 chr9 74006950 74007029 -50069143 + (TC)n Simple_repeat Simple_repeat 2 80 0 8 1149 25 95 0 0 chr9 74007371 74007445 -50068727 + AT_rich Low_complexity Low_complexity 1 74 0 9 1149 886 167 188 6 chr9 74007769 74007950 -50068222 - B3 SINE B2 -2 214 1 1 1149 544 298 38 22 chr9 74009378 74009563 -50066609 - MER58A DNA MER1_type -18 206 19 1 1149 641 283 47 37 chr9 74009587 74009660 -50066512 + B4A SINE B4 25 99 -193 1 1149 1383 70 27 0 chr9 74009660 74009846 -50066326 + B2_Mm1t SINE B2 1 191 -2 1 1149 641 283 47 37 chr9 74009846 74009963 -50066209 + B4A SINE B4 100 216 -76 1 1149 383 256 40 125 chr9 74009984 74010136 -50066036 + RSINE1 SINE B4 12 150 -15 1 1149 497 254 106 17 chr9 74010569 74010749 -50065423 + Tigger15a DNA TcMar 134 329 -386 1 1149 27 0 0 0 chr9 74010952 74010979 -50065193 + AT_rich Low_complexity Low_complexity 1 27 0 1 1149 423 298 98 87 chr9 74011012 74011299 -50064873 + B4A SINE B4 1 290 -2 1 1149 348 135 0 0 chr9 74012254 74012306 -50063866 - HAL1-3A_ME LINE L1 -833 2025 1974 1 1149 207 245 0 0 chr9 74012307 74012360 -50063812 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1149 5287 106 25 6 chr9 74014405 74015181 -50060991 - Lx LINE L1 0 6654 5865 2 1149 967 249 14 0 chr9 74015244 74015461 -50060711 + ID_B1 SINE B4 1 220 -4 2 1149 232 274 36 0 chr9 74015820 74015904 -50060268 - MLT1E2 LTR MaLR 0 627 541 2 1149 760 268 115 11 chr9 74016009 74016270 -50059902 + B4A SINE B4 1 288 -4 2 1149 22 0 0 0 chr9 74016668 74016690 -50059482 + AT_rich Low_complexity Low_complexity 1 22 0 2 1149 1040 111 0 22 chr9 74020270 74020454 -50055718 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1149 768 261 36 68 chr9 74020636 74020858 -50055314 + ID_B1 SINE B4 2 216 -8 2 1149 193 345 34 22 chr9 74021265 74021354 -50054818 - MIRb SINE MIR -74 194 105 2 1149 1208 235 75 9 chr9 74021357 74021704 -50054468 + ORR1D2 LTR MaLR 1 370 0 2 1149 1169 68 96 6 chr9 74022389 74022567 -50053605 - L1Md_F2 LINE L1 0 6582 6389 2 1149 345 256 0 0 chr9 74022605 74022683 -50053489 - B1F SINE Alu -1 148 71 3 1149 355 327 36 6 chr9 74023324 74023490 -50052682 + RMER15 LTR ERVL 356 526 -49 3 1149 315 49 0 0 chr9 74023502 74023543 -50052629 + (TGG)n Simple_repeat Simple_repeat 2 42 0 3 1149 216 67 0 0 chr9 74023543 74023573 -50052599 + (GGA)n Simple_repeat Simple_repeat 3 32 0 3 1149 515 57 0 0 chr9 74023750 74023820 -50052352 - L1_Mus1 LINE L1 -2 6565 6496 3 1149 2254 35 3 3 chr9 74023820 74024105 -50052067 + L1_Mus1 LINE L1 6183 6467 -100 3 1149 380 303 18 9 chr9 74024693 74024803 -50051369 + PB1 SINE Alu 1 111 -16 3 1149 1447 58 0 31 chr9 74024986 74025203 -50050969 + L1_Mus1 LINE L1 6375 6567 0 3 1149 720 270 100 57 chr9 74025789 74026068 -50050104 - B4A SINE B4 0 292 2 3 1149 694 312 70 37 chr9 74026151 74026394 -50049778 - B4A SINE B4 -8 284 34 3 1149 769 246 26 26 chr9 74026458 74026650 -50049522 - B3A SINE B2 -6 192 1 3 1149 333 0 0 0 chr9 74028129 74028166 -50048006 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1149 586 292 64 5 chr9 74028214 74028417 -50047755 + B3 SINE B2 1 215 -1 4 1149 411 21 0 0 chr9 74029109 74029157 -50047015 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 4 1149 886 256 17 17 chr9 74029164 74029339 -50046833 - B3 SINE B2 -40 176 2 4 1149 546 340 77 55 chr9 74030140 74030414 -50045758 - B4 SINE B4 -11 281 2 4 1149 582 15 0 0 chr9 74030571 74030638 -50045534 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1149 254 302 34 25 chr9 74031438 74031557 -50044615 + Charlie5 DNA MER1_type 2487 2606 -18 4 1149 205 200 0 0 chr9 74031880 74031920 -50044252 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1149 408 118 0 0 chr9 74032075 74032143 -50044029 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1149 441 36 0 0 chr9 74032143 74032197 -50043975 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1149 1051 245 64 81 chr9 74032597 74032836 -50043336 - B4A SINE B4 0 292 49 5 1149 582 262 21 0 chr9 74032836 74032981 -50043191 + B1_Mur1 SINE Alu 2 149 0 5 1149 1051 245 64 81 chr9 74032981 74033038 -50043134 - B4A SINE B4 -244 48 1 5 1149 540 282 76 16 chr9 74033286 74033470 -50042702 - B3A SINE B2 0 198 4 5 1149 207 146 0 0 chr9 74033640 74033681 -50042491 + (TTA)n Simple_repeat Simple_repeat 1 41 0 5 1149 680 263 32 54 chr9 74033795 74033980 -50042192 + B3A SINE B2 2 182 -16 5 1149 387 0 0 0 chr9 74035572 74035615 -50040557 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1149 204 193 0 66 chr9 74036892 74036953 -50039219 + T-rich Low_complexity Low_complexity 4 60 0 5 1149 454 292 43 7 chr9 74038755 74038893 -50037279 - B1_Mur2 SINE Alu -3 146 4 5 1149 444 19 0 0 chr9 74039618 74039671 -50036501 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1149 238 274 222 0 chr9 74040107 74040224 -50035948 - L2a LINE L2 0 3426 3284 5 1149 350 188 0 4 chr9 74040242 74040309 -50035863 + B3 SINE B2 1 65 -133 6 1149 281 198 0 6 chr9 74040592 74040646 -50035526 - B3 SINE B2 -133 65 14 6 1149 381 297 124 5 chr9 74041018 74041211 -50034961 - L1MB1 LINE L1 -335 5833 5618 6 1149 297 0 0 0 chr9 74041241 74041274 -50034898 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1149 696 281 14 0 chr9 74041285 74041424 -50034748 - RSINE1 SINE B4 -22 143 3 6 1149 2005 171 133 106 chr9 74041516 74042103 -50034069 + RMER6C LTR ERVK 1 603 -87 6 1149 22 0 0 0 chr9 74042576 74042598 -50033574 + AT_rich Low_complexity Low_complexity 1 22 0 6 1149 357 82 0 0 chr9 74043624 74043673 -50032499 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1149 1173 68 0 0 chr9 74043673 74043819 -50032353 - B1_Mus2 SINE Alu 0 147 2 6 1149 270 292 27 27 chr9 74043954 74044028 -50032144 + ID4 SINE ID 9 82 -1 6 1149 360 0 0 0 chr9 74044058 74044098 -50032074 + (TTA)n Simple_repeat Simple_repeat 2 41 0 7 1149 21 0 0 0 chr9 74044202 74044223 -50031949 + AT_rich Low_complexity Low_complexity 1 21 0 7 1149 845 177 113 54 chr9 74044324 74044377 -50031795 - B3 SINE B2 -1 215 145 7 1149 2127 81 94 3 chr9 74044377 74044675 -50031497 - ORR1A2 LTR MaLR 0 327 3 7 1149 845 177 113 54 chr9 74044675 74044824 -50031348 - B3 SINE B2 -72 144 1 7 1149 906 304 16 90 chr9 74044908 74045219 -50030953 - B4A SINE B4 -2 290 3 7 1149 395 342 0 0 chr9 74045312 74045429 -50030743 + MER94 DNA AcHobo 18 134 0 7 1149 824 183 190 22 chr9 74046919 74047098 -50029074 - B3 SINE B2 -7 209 1 7 1149 226 161 31 31 chr9 74047669 74047733 -50028439 + (CATA)n Simple_repeat Simple_repeat 2 65 0 7 1149 1642 155 55 0 chr9 74047760 74048031 -50028141 - MTC LTR MaLR 0 421 136 7 1149 216 0 0 0 chr9 74048035 74048059 -50028113 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1149 2543 143 52 16 chr9 74048059 74048496 -50027676 - RMER6B LTR ERVK -3 458 5 8 1149 512 167 136 10 chr9 74048488 74048591 -50027581 - RMER6B LTR ERVK -342 119 4 8 1149 706 214 21 0 chr9 74048594 74048734 -50027438 - MTC LTR MaLR -278 143 1 7 1149 918 245 10 15 chr9 74050075 74050278 -50025894 + B3 SINE B2 8 209 -7 8 1149 737 218 108 31 chr9 74050519 74050713 -50025459 - B3 SINE B2 0 216 8 8 1149 5387 43 0 0 chr9 74051090 74051768 -50024404 + L1Md_T LINE L1 5938 6582 0 8 1149 1777 143 44 56 chr9 74051768 74052109 -50024063 + Lx LINE L1 6311 6647 -7 8 1149 31 44 0 0 chr9 74052530 74052575 -50023597 + AT_rich Low_complexity Low_complexity 1 45 0 8 1149 918 138 13 0 chr9 74052776 74052928 -50023244 + URR1A DNA MER1_type 68 221 -5 8 1149 1085 230 64 69 chr9 74052935 74053281 -50022891 + MTE2a LTR MaLR 36 379 0 8 1150 246 32 0 0 chr9 74055967 74055998 -50020174 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1150 286 269 92 0 chr9 74056022 74056141 -50020031 + L1MEe LINE L1 1440 1569 -4597 9 1150 357 276 41 0 chr9 74056153 74056251 -50019921 + L1MEe LINE L1 3175 3276 -2870 9 1150 886 46 52 0 chr9 74057116 74057269 -50018903 + (TAGA)n Simple_repeat Simple_repeat 4 164 0 9 1150 531 234 73 67 chr9 74057269 74057448 -50018724 + B3A SINE B2 4 183 -15 9 1150 238 326 86 71 chr9 74057449 74057647 -50018525 - RMER12 LTR ERVK -480 842 642 9 1150 704 242 69 19 chr9 74058892 74059052 -50017120 + B4A SINE B4 125 292 0 9 1150 189 158 79 0 chr9 74059099 74059137 -50017035 - MIRm SINE MIR -3 273 233 9 1150 515 86 25 0 chr9 74059180 74059261 -50016911 + (CATA)n Simple_repeat Simple_repeat 1 83 0 9 1150 354 183 31 148 chr9 74060421 74060549 -50015623 + PB1D9 SINE Alu 5 117 -3 9 1150 1147 308 7 7 chr9 74063099 74063387 -50012785 + B4A SINE B4 5 292 0 9 1150 528 16 0 0 chr9 74063434 74063495 -50012677 + (TA)n Simple_repeat Simple_repeat 1 61 0 9 1150 750 275 38 10 chr9 74067198 74067407 -50008765 - B3 SINE B2 0 216 2 1 1150 467 287 179 8 chr9 74067493 74067739 -50008433 - B4 SINE B4 0 292 5 1 1150 22 0 0 0 chr9 74067753 74067775 -50008397 + AT_rich Low_complexity Low_complexity 1 22 0 1 1150 367 255 10 20 chr9 74068640 74068740 -50007432 + Charlie7 DNA MER1_type 354 452 -2160 1 1150 251 280 35 77 chr9 74069226 74069369 -50006803 - L2c LINE L2 -180 3207 3071 1 1150 300 261 67 0 chr9 74069871 74070005 -50006167 + L1M2 LINE L1 4240 4382 -1761 1 1150 815 113 19 2 chr9 74070154 74070299 -50005873 + B2_Mm2 SINE B2 1 155 -61 1 1150 1493 215 121 19 chr9 74071059 74071438 -50004734 - MTD LTR MaLR -1 418 1 1 1150 2150 117 21 64 chr9 74071767 74072142 -50004030 - RLTR15 LTR ERVK 0 359 1 1 1150 351 0 0 0 chr9 74072834 74072873 -50003299 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1150 201 114 22 22 chr9 74073020 74073065 -50003107 + T-rich Low_complexity Low_complexity 2 46 0 1 1150 362 74 0 18 chr9 74073105 74073160 -50003012 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1150 529 286 100 12 chr9 74074458 74074628 -50001544 + B3 SINE B2 2 186 -30 1 1150 356 298 47 47 chr9 74075156 74075304 -50000868 - ID_B1 SINE B4 -59 165 18 1 1150 570 15 0 0 chr9 74075447 74075514 -50000658 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1150 782 284 46 35 chr9 74075878 74076163 -50000009 + B4 SINE B4 1 288 -4 1 1150 451 246 169 0 chr9 74076648 74076778 -49999394 - RSINE1 SINE B4 -4 161 10 1 1150 186 43 0 0 chr9 74076807 74076830 -49999342 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1150 232 282 34 45 chr9 74077246 74077335 -49998837 + LTR87 LTR ERVL? 52 139 -485 1 1150 719 239 7 7 chr9 74077521 74077660 -49998512 + B1_Mur2 SINE Alu 6 144 -5 1 1150 315 71 0 0 chr9 74077661 74077703 -49998469 + (GGA)n Simple_repeat Simple_repeat 3 44 0 1 1150 435 38 0 0 chr9 74077703 74077756 -49998416 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 1 1150 228 298 0 0 chr9 74077756 74077813 -49998359 + GA-rich Low_complexity Low_complexity 4 60 0 1 1150 187 213 31 47 chr9 74078099 74078163 -49998009 - L2a LINE L2 -25 3401 3339 1 1150 1388 124 18 0 chr9 74078519 74078736 -49997436 - URR1B DNA MER1_type 0 225 5 1 1150 424 257 6 5 chr9 74078771 74078866 -49997306 + PB1D10 SINE Alu 5 88 -29 1 1150 583 405 31 22 chr9 74079665 74080081 -49996091 - L4 LINE RTE -339 1690 1271 1 1150 1238 167 5 5 chr9 74080230 74080441 -49995731 + URR1A DNA MER1_type 13 223 -3 1 1150 891 218 58 39 chr9 74081413 74081618 -49994554 + B3A SINE B2 1 209 -7 1 1150 585 293 53 46 chr9 74082559 74082842 -49993330 + B4A SINE B4 5 289 -3 1 1150 469 283 36 46 chr9 74083412 74083608 -49992564 - B3A SINE B2 -4 194 1 1 1150 931 238 90 0 chr9 74084059 74084248 -49991924 + ID_B1 SINE B4 16 221 -3 1 1150 275 283 114 9 chr9 74085338 74085452 -49990720 - RMER15 LTR ERVL -17 558 433 1 1150 299 356 66 22 chr9 74085469 74085742 -49990430 - Lx8 LINE L1 -221 7252 6968 1 1150 741 298 8 54 chr9 74085746 74085982 -49990190 - ID_B1 SINE B4 -9 215 1 1 1150 759 270 0 6 chr9 74086347 74086511 -49989661 + RSINE1 SINE B4 3 165 0 1 1150 758 212 0 11 chr9 74087327 74087508 -49988664 + GA-rich Low_complexity Low_complexity 2 180 0 1 1150 267 154 0 0 chr9 74087508 74087547 -49988625 + polypurine Low_complexity Low_complexity 2 40 0 1 1150 852 115 40 67 chr9 74091091 74091240 -49984932 + B1_Mus1 SINE Alu 3 147 -1 1 1150 450 0 0 0 chr9 74091863 74091913 -49984259 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1150 278 299 0 0 chr9 74092367 74092434 -49983738 + CT-rich Low_complexity Low_complexity 2 68 0 1 1150 400 234 76 30 chr9 74092447 74092579 -49983593 - B1F1 SINE Alu -7 142 5 1 1150 195 42 0 0 chr9 74092632 74092656 -49983516 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1150 415 219 48 30 chr9 74093091 74093256 -49982916 + (TATATG)n Simple_repeat Simple_repeat 2 169 0 1 1150 294 231 40 53 chr9 74093280 74093431 -49982741 + (TATG)n Simple_repeat Simple_repeat 3 151 0 1 1150 240 167 0 0 chr9 74093989 74094037 -49982135 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1150 699 288 114 26 chr9 74095136 74095400 -49980772 - B4A SINE B4 0 292 6 1 1150 192 111 0 0 chr9 74095613 74095649 -49980523 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1150 189 196 32 111 chr9 74096045 74096108 -49980064 + MIRb SINE MIR 179 236 -32 1 1150 895 185 37 32 chr9 74099479 74099669 -49976503 + URR1B DNA MER1_type 8 198 -27 1 1150 237 342 58 32 chr9 74100050 74100204 -49975968 + L2c LINE L2 3227 3384 -3 1 1150 595 287 13 0 chr9 74100331 74100488 -49975684 + RMER30 DNA MER1_type 5 163 -39 1 1150 483 301 67 63 chr9 74100551 74100774 -49975398 + MER58A DNA MER1_type 1 224 0 1 1150 187 349 112 20 chr9 74101496 74101692 -49974480 + L2c LINE L2 3151 3364 -23 1 1150 1676 34 0 5 chr9 74102311 74102520 -49973652 + L1Md_F3 LINE L1 6365 6572 -12 1 1150 441 54 0 0 chr9 74103895 74103951 -49972221 + (TTTTG)n Simple_repeat Simple_repeat 3 58 0 1 1150 3894 72 51 11 chr9 74104381 74104915 -49971257 - L1Md_F2 LINE L1 -1 6581 6027 1 1150 879 255 14 9 chr9 74104981 74105195 -49970977 + B3 SINE B2 2 216 0 1 1150 225 349 87 39 chr9 74105846 74106052 -49970120 - MIRb SINE MIR -17 251 36 1 1150 593 317 43 29 chr9 74106763 74107039 -49969133 + B4A SINE B4 3 282 -10 1 1150 306 50 0 0 chr9 74107050 74107090 -49969082 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1150 382 322 57 38 chr9 74107641 74107851 -49968321 - Lx8 LINE L1 -244 7229 7016 1 1150 540 276 121 17 chr9 74107920 74108093 -49968079 + B4A SINE B4 2 192 -100 1 1150 243 0 0 0 chr9 74108755 74108782 -49967390 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1150 539 279 23 55 chr9 74109015 74109235 -49966937 + B3 SINE B2 3 215 -1 1 1150 550 289 72 29 chr9 74110137 74110344 -49965828 - RMER15 LTR ERVL -13 562 347 1 1150 297 363 10 10 chr9 74111296 74111399 -49964773 + PB1D10 SINE Alu 7 109 -8 1 1150 429 20 0 0 chr9 74111835 74111885 -49964287 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 1 1150 273 57 0 0 chr9 74112669 74112704 -49963468 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1150 216 306 14 14 chr9 74112775 74112848 -49963324 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 1 1150 497 305 77 13 chr9 74112877 74113033 -49963139 - B4 SINE B4 -126 166 1 1 1150 436 79 43 129 chr9 74113161 74113277 -49962895 - Lx LINE L1 0 6654 6549 1 1150 261 0 0 0 chr9 74113387 74113416 -49962756 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1150 447 68 0 0 chr9 74113826 74113885 -49962287 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 1150 698 282 5 89 chr9 74113888 74114102 -49962070 - B3A SINE B2 0 198 3 1 1150 308 244 32 8 chr9 74114382 74114506 -49961666 + (TA)n Simple_repeat Simple_repeat 1 127 0 1 1150 629 258 84 0 chr9 74115041 74115175 -49960997 + B3A SINE B2 22 168 -30 1 1150 333 0 0 0 chr9 74115175 74115212 -49960960 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1150 629 258 84 0 chr9 74115212 74115232 -49960940 + B3A SINE B2 169 188 -10 1 1150 180 111 0 0 chr9 74115498 74115525 -49960647 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1150 8249 40 1 5 chr9 74115540 74116628 -49959544 - L1Md_F2 LINE L1 0 6582 5501 1 1150 6351 17 0 1 chr9 74116629 74117352 -49958820 + L1Md_F2 LINE L1 4775 5496 -387 1 1150 702 246 69 0 chr9 74117494 74117669 -49958503 - B3A SINE B2 -10 188 2 1 1150 542 326 75 52 chr9 74118237 74118583 -49957589 + ORR1E LTR MaLR 6 359 0 1 1150 350 262 35 28 chr9 74118823 74118994 -49957178 + B4A SINE B4 4 165 0 1 1150 192 77 0 0 chr9 74119002 74119028 -49957144 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1150 207 347 17 12 chr9 74120008 74120121 -49956051 + L2b LINE L2 3294 3419 -7 1 1150 369 0 0 0 chr9 74120785 74120826 -49955346 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1150 243 333 0 0 chr9 74122246 74122354 -49953818 + (TA)n Simple_repeat Simple_repeat 1 108 0 1 1150 237 196 0 0 chr9 74122370 74122426 -49953746 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1150 482 313 0 6 chr9 74122536 74122768 -49953404 + (TA)n Simple_repeat Simple_repeat 1 230 0 1 1150 24 32 0 0 chr9 74127031 74127062 -49949110 + AT_rich Low_complexity Low_complexity 1 31 0 1 1150 733 309 22 89 chr9 74127904 74128217 -49947955 + B4A SINE B4 1 292 0 1 1150 211 200 0 0 chr9 74128827 74128872 -49947300 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1150 244 289 0 0 chr9 74129376 74129428 -49946744 + polypyrimidine Low_complexity Low_complexity 4 55 0 1 1150 200 244 22 0 chr9 74130401 74130446 -49945726 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1 1150 273 57 0 0 chr9 74131296 74131331 -49944841 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1150 243 0 0 0 chr9 74132889 74132916 -49943256 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1150 390 85 0 0 chr9 74133126 74133185 -49942987 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1150 635 0 13 0 chr9 74133604 74133679 -49942493 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1150 1176 158 33 9 chr9 74135211 74135422 -49940750 - URR1B DNA MER1_type -9 216 1 1 1150 496 283 178 69 chr9 74135607 74135854 -49940318 - B4A SINE B4 -16 276 3 1 1150 27 29 0 0 chr9 74135976 74136010 -49940162 + AT_rich Low_complexity Low_complexity 1 34 0 1 1150 442 33 0 10 chr9 74136886 74136952 -49939220 + Lx LINE L1 5728 5790 -1260 2 1150 2387 77 29 9 chr9 74136952 74137267 -49938905 + L1_Mus3 LINE L1 6317 6637 -1 2 1150 5690 137 10 17 chr9 74137262 74138140 -49938032 + Lx LINE L1 5783 6654 0 2 1150 1149 95 0 0 chr9 74138260 74138397 -49937775 + B1_Mm SINE Alu 1 137 -10 2 1150 185 65 0 31 chr9 74138397 74138429 -49937743 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1150 721 179 0 17 chr9 74138723 74138842 -49937330 - PB1D9 SINE Alu -3 117 1 2 1150 245 200 20 0 chr9 74138997 74139047 -49937125 + HAL1 LINE L1 1833 1883 -624 2 1150 987 292 34 26 chr9 74139170 74139537 -49936635 + ORR1E LTR MaLR 1 360 -10 2 1150 338 289 86 74 chr9 74139831 74140167 -49936005 + L1_Mur3 LINE L1 825 1164 -6548 2 1150 1096 259 65 10 chr9 74140870 74141162 -49935010 - MTD LTR MaLR -110 309 2 2 1150 297 351 68 37 chr9 74141279 74141497 -49934675 - MIRb SINE MIR -6 262 28 2 1150 1008 261 49 78 chr9 74141913 74142304 -49933868 - MTE2a LTR MaLR -13 406 23 2 1150 691 265 106 0 chr9 74142729 74142918 -49933254 - MER20 DNA MER1_type -8 211 3 2 1150 270 0 0 0 chr9 74144624 74144654 -49931518 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1150 261 308 8 24 chr9 74144671 74144794 -49931378 + (TG)n Simple_repeat Simple_repeat 2 122 0 2 1150 473 291 90 0 chr9 74144824 74144958 -49931214 - B4A SINE B4 -4 288 143 2 1150 708 289 26 8 chr9 74144999 74145187 -49930985 - B4A SINE B4 -25 199 1 2 1150 859 272 4 22 chr9 74146248 74146464 -49929708 + B3A SINE B2 5 216 0 2 1150 1501 271 44 68 chr9 74147716 74147778 -49928394 - MT2A LTR ERVL 0 533 474 2 1150 760 20 10 10 chr9 74147778 74147877 -49928295 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 2 1150 1501 271 44 68 chr9 74147877 74148360 -49927812 - MT2A LTR ERVL -60 473 1 2 1150 201 94 0 0 chr9 74148447 74148479 -49927693 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1150 308 312 95 133 chr9 74148905 74149190 -49926982 - ORR1E LTR MaLR -11 348 75 2 1150 23 33 0 0 chr9 74150203 74150233 -49925939 + AT_rich Low_complexity Low_complexity 1 30 0 2 1150 640 206 72 14 chr9 74150342 74150480 -49925692 - B1_Mm SINE Alu 0 147 2 2 1150 608 337 22 15 chr9 74150515 74150783 -49925389 - Lx8 LINE L1 -214 7259 6990 2 1150 1647 266 22 3 chr9 74150860 74151226 -49924946 - MTE2b LTR MaLR -6 373 1 2 1150 205 244 192 0 chr9 74151881 74151959 -49924213 + MIRb SINE MIR 62 157 -111 2 1150 187 232 87 78 chr9 74152859 74152962 -49923210 - L3 LINE CR1 -1839 2650 2547 2 1150 304 349 62 23 chr9 74152921 74153097 -49923075 - MIR SINE MIR -70 192 10 2 1150 192 301 95 14 chr9 74153868 74153942 -49922230 - MIRm SINE MIR -42 234 155 2 1150 618 14 0 0 chr9 74154215 74154286 -49921886 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1150 217 230 27 13 chr9 74154637 74154712 -49921460 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1150 1561 243 89 27 chr9 74154722 74155136 -49921036 - Lx8 LINE L1 -23 7450 7011 2 1150 248 240 0 0 chr9 74155433 74155483 -49920689 + L2a LINE L2 3376 3425 -1 2 1150 947 274 155 14 chr9 74156918 74157266 -49918906 + MTD LTR MaLR 19 415 -4 2 1150 306 329 54 58 chr9 74158370 74158702 -49917470 + LTR33 LTR ERVL 23 465 -50 2 1150 422 266 69 31 chr9 74158796 74158955 -49917217 - L1MC1 LINE L1 -1 6332 6168 2 1150 12830 95 1 39 chr9 74159190 74160922 -49915250 - L1_Mm LINE L1 -2 5881 4177 2 1150 342 0 0 0 chr9 74160922 74160960 -49915212 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1150 3488 64 0 0 chr9 74160962 74161371 -49914801 - L1_Mus1 LINE L1 -11 6556 6148 2 1150 12830 95 1 39 chr9 74161371 74161521 -49914651 - L1_Mm LINE L1 -1707 4176 4068 2 1150 5795 55 1 0 chr9 74161521 74162195 -49913977 + L1_Mus1 LINE L1 5882 6556 -11 2 1150 279 0 0 0 chr9 74162195 74162226 -49913946 + (TAA)n Simple_repeat Simple_repeat 3 33 0 2 1150 346 243 43 68 chr9 74162433 74162596 -49913576 - L3 LINE CR1 -222 4267 4109 2 1150 188 213 16 0 chr9 74163323 74163384 -49912788 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 2 1150 1200 294 92 18 chr9 74164164 74164557 -49911615 - MTD LTR MaLR -1 406 1 2 1150 1317 294 34 20 chr9 74164557 74165169 -49911003 + Lx6 LINE L1 6450 7324 -136 2 1150 732 179 0 22 chr9 74165183 74165366 -49910806 + CT-rich Low_complexity Low_complexity 1 179 0 2 1150 1209 90 0 0 chr9 74165384 74165561 -49910611 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 2 1150 337 226 68 25 chr9 74165561 74165679 -49910493 + Lx6 LINE L1 7312 7434 -26 2 1150 182 217 55 88 chr9 74166918 74167009 -49909163 + L2 LINE L2 2209 2296 -1123 2 1150 450 0 0 0 chr9 74167024 74167074 -49909098 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1150 1424 73 0 5 chr9 74168365 74168558 -49907614 + L1_Mus1 LINE L1 6375 6566 -1 2 1150 317 284 0 12 chr9 74168762 74168844 -49907328 + PB1D10 SINE Alu 24 104 -13 2 1150 792 115 0 0 chr9 74168848 74168970 -49907202 + (GAA)n Simple_repeat Simple_repeat 1 122 0 2 1150 251 237 0 17 chr9 74169473 74169533 -49906639 - MER57-int LTR ERV1 -328 7209 7151 2 1150 23 68 0 0 chr9 74170831 74170875 -49905297 + AT_rich Low_complexity Low_complexity 1 44 0 2 1150 229 51 51 0 chr9 74170925 74170964 -49905208 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 2 1150 216 0 0 0 chr9 74171184 74171208 -49904964 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1150 468 0 0 0 chr9 74171362 74171414 -49904758 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1150 450 0 0 0 chr9 74171543 74171593 -49904579 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1150 465 66 0 0 chr9 74171591 74171652 -49904520 + (TTCCC)n Simple_repeat Simple_repeat 4 64 0 2 1150 420 20 0 0 chr9 74171844 74171893 -49904279 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1150 325 0 44 0 chr9 74171893 74171937 -49904235 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1150 198 0 0 0 chr9 74172616 74172638 -49903534 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1150 835 286 14 23 chr9 74172912 74173127 -49903045 + ID_B1 SINE B4 9 221 -3 2 1150 415 279 90 58 chr9 74174387 74174543 -49901629 + RSINE1 SINE B4 3 163 -2 2 1150 254 307 141 8 chr9 74175493 74175621 -49900551 - ORR1E LTR MaLR 0 359 215 2 1150 1211 216 105 0 chr9 74175848 74176154 -49900018 - RMER15 LTR ERVL 0 575 238 2 1150 289 212 30 0 chr9 74176149 74176215 -49899957 - RMER15 LTR ERVL -468 107 40 2 1150 502 257 70 51 chr9 74177053 74177209 -49898963 + RSINE1 SINE B4 2 160 -5 2 1150 231 36 0 0 chr9 74177216 74177244 -49898928 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1150 35 24 0 0 chr9 74177260 74177302 -49898870 + AT_rich Low_complexity Low_complexity 1 42 0 2 1150 427 312 153 38 chr9 74177444 74177764 -49898408 + ORR1E LTR MaLR 3 359 0 2 1150 487 281 22 15 chr9 74178047 74178071 -49898101 - B4 SINE B4 -62 230 93 2 1150 667 146 0 26 chr9 74178071 74178184 -49897988 - B1_Mur1 SINE Alu -32 117 8 2 1150 292 336 26 35 chr9 74178201 74178315 -49897857 - RSINE1 SINE B4 0 165 53 2 1150 219 69 0 0 chr9 74178400 74178429 -49897743 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2 1150 366 91 0 0 chr9 74178429 74178484 -49897688 + (CAA)n Simple_repeat Simple_repeat 1 55 0 2 1150 333 0 0 0 chr9 74180452 74180489 -49895683 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1150 226 246 65 7 chr9 74180517 74180631 -49895541 - B3A SINE B2 -70 125 1 2 1150 369 0 0 0 chr9 74180688 74180729 -49895443 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1150 245 221 33 65 chr9 74181127 74181219 -49894953 + MER58B DNA MER1_type 3 91 -250 2 1150 221 0 35 0 chr9 74181222 74181251 -49894921 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1150 340 294 32 77 chr9 74181454 74181609 -49894563 - B3A SINE B2 0 198 51 2 1150 320 253 75 32 chr9 74181628 74181722 -49894450 - B4A SINE B4 -194 98 1 2 1150 814 234 13 22 chr9 74182708 74182906 -49893266 + B3A SINE B2 5 203 -13 2 1150 819 301 14 55 chr9 74183571 74183863 -49892309 + B4A SINE B4 1 280 -12 2 1150 387 0 0 0 chr9 74183881 74183924 -49892248 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1150 497 336 34 0 chr9 74183936 74184082 -49892090 + B3A SINE B2 1 151 -47 2 1150 432 0 0 0 chr9 74184084 74184132 -49892040 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1150 22 35 0 0 chr9 74184132 74184161 -49892011 + AT_rich Low_complexity Low_complexity 1 29 0 2 1150 292 281 103 10 chr9 74184532 74184629 -49891543 + B4A SINE B4 2 107 -185 2 1150 213 65 0 0 chr9 74184629 74184660 -49891512 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1150 1321 35 12 0 chr9 74184820 74184989 -49891183 + B2_Mm2 SINE B2 1 171 -24 2 1150 474 18 0 0 chr9 74186007 74186062 -49890110 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 2 1150 537 138 0 0 chr9 74186307 74186401 -49889771 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 2 143 919 287 66 27 chr9 74186677 74187010 -49889162 - MLT1D LTR MaLR -40 465 120 2 1151 1364 242 29 37 chr9 74187017 74187140 -49889032 - MTEb LTR MaLR 0 379 250 2 1151 3408 43 51 0 chr9 74187140 74187344 -49888828 - RLTR10C LTR ERVK 0 436 233 2 1151 234 0 0 0 chr9 74187344 74187370 -49888802 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1151 3408 43 51 0 chr9 74187370 74187580 -49888592 - RLTR10C LTR ERVK -204 232 2 2 1151 1364 242 29 37 chr9 74187580 74187595 -49888577 - MTEb LTR MaLR -130 249 241 2 1151 2746 28 28 0 chr9 74187595 74187913 -49888259 + IAPLTR2b LTR ERVK 1 327 0 2 1151 1364 242 29 37 chr9 74187913 74188154 -49888018 - MTEb LTR MaLR -139 240 2 2 1151 290 274 54 54 chr9 74188154 74188251 -49887921 - MLT1D LTR MaLR -402 103 7 2 1151 462 236 73 10 chr9 74189553 74189712 -49886460 - ORR1D2 LTR MaLR 0 370 204 2 1151 26 0 0 0 chr9 74190704 74190730 -49885442 + AT_rich Low_complexity Low_complexity 1 26 0 2 1151 581 234 83 47 chr9 74191026 74191219 -49884953 - Lx8 LINE L1 -87 7386 7187 2 1151 1410 75 5 11 chr9 74191237 74191426 -49884746 + B2_Mm1a SINE B2 1 188 -5 3 1151 495 33 0 0 chr9 74191451 74191512 -49884660 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1151 659 245 0 7 chr9 74191526 74191666 -49884506 - B3A SINE B2 -59 139 1 3 1151 231 114 0 0 chr9 74191670 74191705 -49884467 + (TTA)n Simple_repeat Simple_repeat 1 35 0 3 1151 416 259 56 56 chr9 74191752 74191895 -49884277 - RSINE1 SINE B4 -22 143 1 3 1151 262 318 11 0 chr9 74192197 74192285 -49883887 + MIRb SINE MIR 171 259 -9 3 1151 192 40 0 0 chr9 74193126 74193151 -49883021 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1151 402 39 0 0 chr9 74193908 74193960 -49882212 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 3 1151 285 348 49 21 chr9 74194815 74194959 -49881213 + MLT1G1 LTR MaLR 432 579 0 3 1151 278 0 54 0 chr9 74197168 74197205 -49878967 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1151 459 0 0 0 chr9 74197997 74198048 -49878124 + (GGGTG)n Simple_repeat Simple_repeat 3 53 0 3 1151 193 368 9 9 chr9 74198334 74198441 -49877731 + MIRb SINE MIR 146 252 -16 3 1151 323 332 81 11 chr9 74198517 74198800 -49877372 - L1ME3A LINE L1 -30 6143 5841 3 1151 626 155 25 33 chr9 74198801 74198921 -49877251 + B1_Mur4 SINE Alu 26 144 -6 3 1151 492 48 0 0 chr9 74198923 74198986 -49877186 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 3 1151 316 143 0 0 chr9 74199060 74199116 -49877056 - Lx5 LINE L1 -3 7047 6992 3 1151 1062 289 67 12 chr9 74199305 74199648 -49876524 + MTE2a LTR MaLR 18 379 0 3 1151 612 101 0 0 chr9 74200418 74200507 -49875665 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 3 1151 535 181 19 0 chr9 74200538 74200643 -49875529 + B1_Mus1 SINE Alu 40 146 -2 3 1151 279 133 0 0 chr9 74200821 74200866 -49875306 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 3 1151 745 294 30 72 chr9 74201663 74201967 -49874205 + B4 SINE B4 2 292 0 3 1151 333 0 0 0 chr9 74202944 74202981 -49873191 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1151 795 312 57 41 chr9 74203236 74203380 -49872792 - Lx8 LINE L1 -740 6733 6591 3 1151 2266 108 6 24 chr9 74203380 74203713 -49872459 + ORR1A2 LTR MaLR 1 327 0 3 1151 795 312 57 41 chr9 74203713 74203936 -49872236 - Lx8 LINE L1 -883 6590 6360 3 1151 208 163 0 23 chr9 74204477 74204521 -49871651 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1151 857 299 31 19 chr9 74204555 74204814 -49871358 - B4 SINE B4 -20 272 11 3 1151 390 42 0 0 chr9 74205523 74205571 -49870601 + (CTG)n Simple_repeat Simple_repeat 3 50 0 3 1151 906 274 56 22 chr9 74205598 74205867 -49870305 - B4 SINE B4 -14 278 1 3 1151 424 93 0 62 chr9 74207087 74207167 -49869005 - L1Md_F2 LINE L1 -7 6575 6501 3 1151 1057 280 73 34 chr9 74207758 74207931 -49868241 - Lx8 LINE L1 -30 7443 7252 3 1151 781 161 0 69 chr9 74207931 74208104 -49868068 + Lx4B LINE L1 6898 7058 0 3 1151 1057 280 73 34 chr9 74208104 74208311 -49867861 - Lx8 LINE L1 -222 7251 7048 3 1151 601 235 6 84 chr9 74208347 74208514 -49867658 + Lx8 LINE L1 6391 6544 -929 3 1151 869 332 120 39 chr9 74209003 74209596 -49866576 - MER21B LTR ERV1 -123 740 100 3 1151 658 258 47 26 chr9 74209739 74209930 -49866242 + B3A SINE B2 4 198 0 3 1151 525 115 0 0 chr9 74210416 74210494 -49865678 + U4 snRNA snRNA 1 78 -67 3 1151 4445 224 43 25 chr9 74210529 74211508 -49864664 - RMER1A Other Other 0 1030 34 3 1151 29 0 0 0 chr9 74211692 74211721 -49864451 + AT_rich Low_complexity Low_complexity 1 29 0 3 1151 3141 14 0 0 chr9 74211832 74212178 -49863994 + ORR1A0 LTR MaLR 1 346 0 3 1151 471 256 22 22 chr9 74212863 74212999 -49863173 - MTEa LTR MaLR -243 136 1 3 1151 317 194 102 2 chr9 74214949 74215042 -49861130 - MTEb LTR MaLR -276 103 1 3 1151 303 281 112 39 chr9 74215581 74215608 -49860564 - B3A SINE B2 -6 192 161 3 1151 545 42 14 0 chr9 74215608 74215680 -49860492 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 1151 303 281 112 39 chr9 74215680 74215830 -49860342 - B3A SINE B2 -38 160 3 3 1151 523 231 119 0 chr9 74216095 74216229 -49859943 + B3 SINE B2 49 198 -18 3 1151 437 305 24 10 chr9 74216317 74216455 -49859717 + B4A SINE B4 2 133 -91 3 1151 1063 229 122 0 chr9 74216455 74216734 -49859438 - MTD LTR MaLR -14 405 107 3 1151 852 135 98 27 chr9 74216737 74216920 -49859252 - RLTR25A LTR ERVK 0 1103 908 3 1151 603 78 8 41 chr9 74216920 74217041 -49859131 + (TCTCCC)n Simple_repeat Simple_repeat 1 117 0 3 1151 4630 133 71 19 chr9 74217047 74217274 -49858898 - RLTR25A LTR ERVK -183 920 689 3 1151 213 39 0 0 chr9 74217274 74217300 -49858872 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1151 4630 133 71 19 chr9 74217300 74217947 -49858225 - RLTR25A LTR ERVK -415 688 2 3 1151 413 243 9 18 chr9 74217947 74218057 -49858115 - MTD LTR MaLR -310 109 1 3 1151 24 32 0 0 chr9 74218353 74218384 -49857788 + AT_rich Low_complexity Low_complexity 1 31 0 3 1151 285 323 71 20 chr9 74218705 74218876 -49857296 - L2b LINE L2 0 3426 3240 3 1151 513 0 0 0 chr9 74219795 74219852 -49856320 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1151 1328 238 52 23 chr9 74219965 74220309 -49855863 + MTEb LTR MaLR 6 359 -20 3 1151 21 0 0 0 chr9 74222282 74222303 -49853869 + AT_rich Low_complexity Low_complexity 1 21 0 3 1151 677 248 45 76 chr9 74222303 74222526 -49853646 - B3 SINE B2 0 216 1 3 1151 537 44 0 0 chr9 74223163 74223231 -49852941 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1151 238 80 20 20 chr9 74223643 74223694 -49852478 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 1151 495 0 0 0 chr9 74223894 74223949 -49852223 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1151 515 219 103 17 chr9 74223982 74224020 -49852152 - RSINE1 SINE B4 -38 127 81 3 1151 582 15 0 0 chr9 74224020 74224087 -49852085 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 1151 515 219 103 17 chr9 74224087 74224164 -49852008 - RSINE1 SINE B4 -85 80 2 3 1151 205 276 19 28 chr9 74224686 74224794 -49851378 + (TATAA)n Simple_repeat Simple_repeat 5 111 0 3 1151 190 398 42 24 chr9 74225176 74225341 -49850831 + MIRb SINE MIR 91 258 -10 3 1151 608 274 66 22 chr9 74225345 74225528 -49850644 + B3A SINE B2 5 195 -3 3 1151 21 36 0 0 chr9 74225528 74225556 -49850616 + AT_rich Low_complexity Low_complexity 1 28 0 3 1151 212 203 0 30 chr9 74225887 74225953 -49850219 + A-rich Low_complexity Low_complexity 5 68 0 3 1151 413 342 6 53 chr9 74226029 74226199 -49849973 + RSINE1 SINE B4 2 163 -2 3 1151 1229 62 7 0 chr9 74226342 74226488 -49849684 + B1_Mus1 SINE Alu 1 147 -1 3 1151 927 245 34 42 chr9 74227282 74227506 -49848666 + B4 SINE B4 4 228 -64 3 1151 334 339 186 0 chr9 74227506 74227630 -49848542 + RSINE1 SINE B4 2 148 -17 3 1151 387 0 0 0 chr9 74227655 74227698 -49848474 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1151 658 217 202 38 chr9 74228181 74228339 -49847833 + B3 SINE B2 1 184 -32 3 1151 531 0 0 0 chr9 74228362 74228421 -49847751 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1151 504 0 0 0 chr9 74228488 74228544 -49847628 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 3 1151 421 250 0 10 chr9 74229071 74229168 -49847004 - MIRm SINE MIR -130 146 51 3 1151 418 342 0 0 chr9 74229536 74229647 -49846525 + PB1D10 SINE Alu 6 116 -1 3 1151 1121 273 105 6 chr9 74229917 74230260 -49845912 + MTE2b LTR MaLR 1 377 -2 3 1151 1542 199 95 89 chr9 74230541 74231190 -49844982 + RLTR31_Mur LTR ERVK 1 547 -6 3 1151 1020 305 59 18 chr9 74231394 74231781 -49844391 + MTD LTR MaLR 1 403 -16 3 1151 378 0 0 0 chr9 74233562 74233604 -49842568 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1151 22 0 0 0 chr9 74234219 74234241 -49841931 + AT_rich Low_complexity Low_complexity 1 22 0 3 1151 1103 259 56 39 chr9 74234890 74235175 -49840997 + B4A SINE B4 3 292 0 3 1151 808 226 0 0 chr9 74235805 74235942 -49840230 - B3A SINE B2 -60 138 2 3 1151 265 311 164 31 chr9 74235981 74236207 -49839965 + Charlie19a DNA Charlie 130 385 -1 3 1151 21 0 0 0 chr9 74236378 74236399 -49839773 + AT_rich Low_complexity Low_complexity 1 21 0 3 1151 216 314 7 4 chr9 74237450 74237520 -49838652 + MIRm SINE MIR 110 180 -88 3 1151 609 184 18 0 chr9 74237991 74238159 -49838013 + (TG)n Simple_repeat Simple_repeat 1 171 0 3 1151 571 290 70 11 chr9 74238171 74238356 -49837816 - B3 SINE B2 -13 203 8 3 1151 184 303 66 22 chr9 74238365 74238456 -49837716 - MIRm SINE MIR -122 154 60 3 1151 204 102 61 0 chr9 74238829 74238878 -49837294 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1151 189 0 0 0 chr9 74239034 74239055 -49837117 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1151 22 35 0 0 chr9 74239436 74239465 -49836707 + AT_rich Low_complexity Low_complexity 1 29 0 3 1151 360 271 31 10 chr9 74239604 74239701 -49836471 + PB1D9 SINE Alu 1 99 -21 3 1151 1043 276 91 24 chr9 74240104 74240435 -49835737 + ORR1E LTR MaLR 1 353 -6 3 1151 786 163 73 20 chr9 74240448 74240598 -49835574 + URR1A DNA MER1_type 44 201 -25 3 1151 320 204 200 21 chr9 74240849 74240944 -49835228 + B1F SINE Alu 10 121 -28 3 1151 197 185 0 36 chr9 74240960 74241016 -49835156 + GA-rich Low_complexity Low_complexity 1 54 0 3 1151 302 273 130 27 chr9 74242079 74242374 -49833798 + ERVL-E-int LTR ERVL 1435 1832 -3653 3 1151 238 327 16 106 chr9 74242819 74242835 -49833337 + MT2B LTR ERVL 152 156 -445 3 1151 502 313 7 30 chr9 74242835 74242970 -49833202 + B1_Mur1 SINE Alu 2 133 -16 3 1151 644 36 12 0 chr9 74242981 74243064 -49833108 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 3 1151 194 392 39 52 chr9 74243786 74244015 -49832157 + L2b LINE L2 3095 3320 -55 3 1151 693 78 157 0 chr9 74244028 74244143 -49832029 + URR1B DNA MER1_type 93 225 0 4 1151 1045 241 172 9 chr9 74244143 74244587 -49831585 - MT2A LTR ERVL -16 517 1 4 1151 531 266 60 27 chr9 74246013 74246204 -49829968 + Lx9 LINE L1 5756 5956 -1688 4 1151 683 356 38 19 chr9 74246609 74246927 -49829245 + MLT1A0 LTR MaLR 34 357 -8 4 1151 1232 225 117 53 chr9 74247469 74247863 -49828309 + MTD LTR MaLR 1 419 0 4 1151 282 312 9 26 chr9 74248387 74248502 -49827670 + Kanga1b DNA Tc2 2 116 -663 4 1151 312 309 98 73 chr9 74248519 74248683 -49827489 + MER5A DNA MER1_type 1 168 -21 4 1151 218 214 0 18 chr9 74248695 74248752 -49827420 + (CAGA)n Simple_repeat Simple_repeat 4 59 0 4 1151 543 272 179 43 chr9 74248849 74249129 -49827043 - MLT2B1 LTR ERVL -193 327 10 4 1151 409 324 41 7 chr9 74249135 74249281 -49826891 + Kanga1b DNA Tc2 165 315 -464 4 1151 438 301 29 63 chr9 74249390 74249564 -49826608 - MTEa LTR MaLR -211 168 1 4 1151 242 274 0 24 chr9 74250266 74250357 -49825815 + MTEa LTR MaLR 3 88 -291 4 1151 1460 222 78 17 chr9 74250409 74250757 -49825415 + MTEa LTR MaLR 1 369 -10 4 1151 250 285 61 0 chr9 74250946 74251041 -49825131 + MIRb SINE MIR 52 151 -57 4 1151 225 65 0 0 chr9 74251852 74251883 -49824289 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1151 2609 148 5 24 chr9 74252274 74252688 -49823484 - MTB_Mm LTR MaLR -1 406 1 4 1151 340 265 0 0 chr9 74252953 74253021 -49823151 - B3A SINE B2 -130 68 1 4 1151 846 202 0 0 chr9 74253143 74253321 -49822851 + GA-rich Low_complexity Low_complexity 2 179 0 4 1151 476 254 111 0 chr9 74253842 74253968 -49822204 + B3A SINE B2 2 141 -57 4 1151 594 0 0 0 chr9 74253973 74254039 -49822133 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1151 28 29 0 0 chr9 74254039 74254074 -49822098 + AT_rich Low_complexity Low_complexity 1 35 0 4 1151 382 253 287 28 chr9 74254270 74254657 -49821515 - L1MC3 LINE L1 0 7785 7299 4 1151 420 209 0 0 chr9 74254798 74254889 -49821283 + CT-rich Low_complexity Low_complexity 4 94 0 4 1151 303 333 106 0 chr9 74254922 74255063 -49821109 - HAL1-3A_ME LINE L1 -419 2439 2284 4 1151 358 269 15 0 chr9 74255064 74255198 -49820974 + CT-rich Low_complexity Low_complexity 2 137 0 4 1151 507 268 94 75 chr9 74255297 74255563 -49820609 - L1MC3 LINE L1 -682 7103 6833 4 1151 896 314 110 9 chr9 74255602 74256029 -49820143 + Tigger9b DNA MER2_type 3 472 -152 4 1151 474 326 92 26 chr9 74256224 74256495 -49819677 - B4A SINE B4 -3 289 1 4 1151 961 279 35 48 chr9 74257302 74257516 -49818656 - B4 SINE B4 0 292 80 4 1151 677 76 9 0 chr9 74257516 74257621 -49818551 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 1151 961 279 35 48 chr9 74257621 74257696 -49818476 - B4 SINE B4 -213 79 7 4 1151 210 143 0 0 chr9 74257805 74257840 -49818332 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1151 41867 11 0 6 chr9 74257985 74264190 -49811982 - L1Md_A LINE L1 0 6582 422 4 1151 363 219 10 71 chr9 74265649 74265767 -49810405 + L1MA5 LINE L1 5854 5963 -349 4 1151 516 301 56 28 chr9 74265941 74266119 -49810053 - MTD LTR MaLR -203 216 34 4 1151 24 0 0 0 chr9 74266594 74266618 -49809554 + AT_rich Low_complexity Low_complexity 1 24 0 4 1151 371 255 163 0 chr9 74268224 74268322 -49807850 + ID_B1 SINE B4 3 116 -108 4 1151 863 249 68 5 chr9 74268957 74269163 -49807009 + ID_B1 SINE B4 2 220 -4 4 1151 21 57 0 0 chr9 74269268 74269303 -49806869 + AT_rich Low_complexity Low_complexity 1 35 0 4 1151 900 239 60 20 chr9 74269797 74269998 -49806174 - B3 SINE B2 -2 214 6 4 1151 817 306 67 34 chr9 74270204 74270562 -49805610 + Lx8 LINE L1 6974 7343 -130 4 1151 243 0 0 0 chr9 74270576 74270603 -49805569 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 4 1151 231 212 11 23 chr9 74270615 74270702 -49805470 + GA-rich Low_complexity Low_complexity 2 87 0 4 1151 232 252 61 61 chr9 74270713 74270844 -49805328 + Lx8 LINE L1 7341 7471 -2 4 1151 287 281 58 66 chr9 74271017 74271154 -49805018 - MIRc SINE MIR -35 233 98 4 1151 256 188 84 32 chr9 74271404 74271558 -49804614 + (CTACT)n Simple_repeat Simple_repeat 2 163 0 4 1151 180 0 0 0 chr9 74271811 74271831 -49804341 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1151 234 294 64 64 chr9 74272900 74273009 -49803163 - MIRc SINE MIR -86 182 74 4 1151 300 349 19 0 chr9 74273051 74273157 -49803015 - ID_B1 SINE B4 -115 109 2 4 1151 664 228 22 7 chr9 74274155 74274292 -49801880 - B1F2 SINE Alu -2 147 9 4 1151 233 316 0 0 chr9 74274341 74274398 -49801774 - MIRc SINE MIR -121 147 91 4 1151 344 221 92 11 chr9 74275622 74275709 -49800463 - PB1D10 SINE Alu -3 114 21 4 1151 246 280 133 48 chr9 74275837 74275942 -49800230 + MIRb SINE MIR 5 118 -150 4 1151 2331 117 0 26 chr9 74276525 74276875 -49799297 - Lx3B LINE L1 -4 6969 6629 4 1151 624 296 57 0 chr9 74277270 74277429 -49798743 + ID_B1 SINE B4 33 200 -24 4 1151 423 0 0 0 chr9 74277430 74277477 -49798695 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 4 1151 191 36 0 35 chr9 74277477 74277500 -49798672 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1151 414 0 0 0 chr9 74277500 74277546 -49798626 + (CACTA)n Simple_repeat Simple_repeat 5 50 0 4 1151 687 46 0 0 chr9 74278041 74278128 -49798044 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 4 1151 243 0 0 0 chr9 74278386 74278413 -49797759 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4 1151 1322 263 121 5 chr9 74279858 74280298 -49795874 - L1M2 LINE L1 -2097 4046 3556 4 1151 530 274 97 5 chr9 74280295 74280511 -49795661 + L1M2 LINE L1 4478 4713 -1430 4 1151 524 273 69 55 chr9 74280563 74280810 -49795362 + RMER15 LTR ERVL 275 575 0 4 1151 769 221 188 0 chr9 74280852 74281033 -49795139 + B3 SINE B2 2 216 0 4 1151 467 266 7 14 chr9 74281033 74281168 -49795004 + L1M2 LINE L1 4896 5029 -1114 4 1151 24 0 0 0 chr9 74281228 74281252 -49794920 + AT_rich Low_complexity Low_complexity 1 24 0 4 1151 793 165 70 28 chr9 74281772 74281915 -49794257 + B1_Mur4 SINE Alu 2 150 0 4 1151 1125 93 0 0 chr9 74282005 74282167 -49794005 + RMER6C LTR ERVK 529 690 0 4 1151 431 308 155 23 chr9 74282372 74282681 -49793491 - L1MC3 LINE L1 -1889 5896 5547 4 1151 537 274 73 56 chr9 74283138 74283316 -49792856 + B3A SINE B2 2 182 -16 4 1151 547 149 19 0 chr9 74283339 74283446 -49792726 + GA-rich Low_complexity Low_complexity 6 114 0 4 1151 23 0 0 0 chr9 74285241 74285264 -49790908 + AT_rich Low_complexity Low_complexity 1 23 0 4 1151 35 0 0 0 chr9 74285598 74285633 -49790539 + AT_rich Low_complexity Low_complexity 1 35 0 4 1151 21 0 0 0 chr9 74285705 74285726 -49790446 + AT_rich Low_complexity Low_complexity 1 21 0 4 1151 520 107 0 13 chr9 74285768 74285844 -49790328 - B4 SINE B4 -216 76 2 4 1151 180 328 75 33 chr9 74286443 74286563 -49789609 - MIRc SINE MIR -50 218 94 4 1151 708 257 133 46 chr9 74286589 74286874 -49789298 + MER31B LTR ERV1 13 322 -144 4 1151 1293 216 230 9 chr9 74286868 74287207 -49788965 + MTD LTR MaLR 6 419 0 4 1151 474 325 65 61 chr9 74287485 74287556 -49788616 + B4 SINE B4 8 77 -215 4 1151 249 33 0 0 chr9 74287556 74287586 -49788586 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1151 474 325 65 61 chr9 74287586 74287760 -49788412 + B4 SINE B4 78 254 -38 4 1151 522 0 0 0 chr9 74287796 74287854 -49788318 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1151 232 221 0 189 chr9 74288798 74288893 -49787279 + B4A SINE B4 216 292 0 4 1151 704 250 40 60 chr9 74289700 74289900 -49786272 + B3A SINE B2 1 196 -2 4 1151 312 298 95 28 chr9 74289969 74290180 -49785992 - Charlie4a DNA MER1_type -227 281 57 4 1151 518 314 51 61 chr9 74290342 74290637 -49785535 - B4A SINE B4 0 292 1 4 1151 225 0 0 0 chr9 74291250 74291275 -49784897 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 4 1151 317 82 0 20 chr9 74292366 74292416 -49783756 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1151 372 43 0 0 chr9 74292532 74292578 -49783594 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1151 205 271 118 0 chr9 74292779 74292880 -49783292 + MIRb SINE MIR 135 254 -14 4 1151 21 0 0 0 chr9 74293179 74293200 -49782972 + AT_rich Low_complexity Low_complexity 1 21 0 4 1151 25 0 0 0 chr9 74293676 74293701 -49782471 + AT_rich Low_complexity Low_complexity 1 25 0 4 1151 414 0 0 0 chr9 74293740 74293786 -49782386 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1151 524 309 45 6 chr9 74294328 74294507 -49781665 - MT2A LTR ERVL -85 448 263 4 1151 774 238 0 6 chr9 74294512 74294673 -49781499 + MTEa LTR MaLR 216 375 -4 4 1151 239 246 151 65 chr9 74294744 74294900 -49781272 + MLT1H1 LTR MaLR 381 555 0 4 1151 998 149 202 0 chr9 74294907 74295095 -49781077 + URR1A DNA MER1_type 1 226 0 4 1151 25 0 0 0 chr9 74295145 74295170 -49781002 + AT_rich Low_complexity Low_complexity 1 25 0 4 1151 479 183 0 35 chr9 74296588 74296673 -49779499 + ID2 SINE ID 2 83 0 4 1151 1035 282 16 53 chr9 74296684 74296987 -49779185 + B4 SINE B4 1 292 0 4 1151 430 16 16 31 chr9 74297011 74297075 -49779097 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 1151 858 246 33 47 chr9 74297193 74297406 -49778766 + B3A SINE B2 6 215 -1 4 1151 450 299 23 34 chr9 74298309 74298498 -49777674 - B3A SINE B2 0 195 2 4 1151 432 0 0 0 chr9 74298814 74298862 -49777310 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1151 710 242 29 95 chr9 74298909 74299119 -49777053 - B4 SINE B4 -96 196 1 4 1151 234 91 0 0 chr9 74299379 74299412 -49776760 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1151 1111 273 25 7 chr9 74299439 74299719 -49776453 - B4A SINE B4 -6 286 2 5 1151 316 252 110 0 chr9 74299906 74300047 -49776125 - MER5A1 DNA MER1_type -6 160 1 5 1151 480 268 164 14 chr9 74300433 74300641 -49775531 - MIR SINE MIR -22 240 2 5 1151 373 273 88 149 chr9 74300679 74300771 -49775401 + B4A SINE B4 11 213 -79 5 1151 568 229 32 8 chr9 74300771 74300894 -49775278 + B1_Mur2 SINE Alu 10 135 -14 5 1151 704 324 55 20 chr9 74300881 74301122 -49775050 + B4 SINE B4 47 289 -3 5 1151 593 49 12 0 chr9 74301138 74301219 -49774953 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 1151 186 118 0 0 chr9 74301219 74301252 -49774920 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1151 239 159 0 45 chr9 74301988 74302054 -49774118 + (TTGG)n Simple_repeat Simple_repeat 3 65 0 5 1151 606 189 0 0 chr9 74302103 74302283 -49773889 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 5 1151 789 286 59 0 chr9 74302285 74302488 -49773684 - ID_B1 SINE B4 -8 216 2 5 1151 44 0 0 0 chr9 74302509 74302553 -49773619 + AT_rich Low_complexity Low_complexity 1 44 0 5 1151 300 27 0 0 chr9 74302562 74302599 -49773573 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 5 1151 511 261 14 28 chr9 74303407 74303549 -49772623 + Lx8 LINE L1 6197 6336 -1137 5 1151 1233 213 143 55 chr9 74303557 74303885 -49772287 + ORR1D1 LTR MaLR 3 359 -15 5 1151 888 315 10 42 chr9 74303889 74304197 -49771975 + Lx8 LINE L1 6339 6636 -837 5 1151 336 24 0 0 chr9 74304217 74304258 -49771914 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1151 306 125 0 0 chr9 74304404 74304452 -49771720 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 5 1151 768 315 27 40 chr9 74304554 74304817 -49771355 - Lx7 LINE L1 -513 7183 6923 5 1151 4799 180 46 38 chr9 74304817 74305708 -49770464 + RMER19B LTR ERVK 1 898 -4 5 1151 768 315 27 40 chr9 74305708 74305742 -49770430 - Lx7 LINE L1 -774 6922 6891 5 1151 958 260 117 11 chr9 74305986 74306336 -49769836 + Lx8 LINE L1 7081 7467 -6 5 1151 387 0 0 0 chr9 74306495 74306538 -49769634 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1151 279 93 0 0 chr9 74306538 74306580 -49769592 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1151 959 139 0 35 chr9 74306724 74306866 -49769306 + B1_Mur3 SINE Alu 1 137 -12 5 1151 383 269 20 88 chr9 74306962 74307109 -49769063 - B3A SINE B2 -4 212 76 5 1151 620 289 35 35 chr9 74307144 74307341 -49768831 + B3A SINE B2 1 197 -1 5 1151 439 190 25 0 chr9 74307420 74307541 -49768631 + (CATA)n Simple_repeat Simple_repeat 3 126 0 5 1151 219 146 0 0 chr9 74307595 74307636 -49768536 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1151 462 36 0 0 chr9 74308477 74308533 -49767639 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1151 320 250 16 16 chr9 74309401 74309584 -49766588 + GA-rich Low_complexity Low_complexity 1 183 0 5 1151 519 151 0 0 chr9 74310498 74310624 -49765548 + CT-rich Low_complexity Low_complexity 1 126 0 5 1151 243 0 0 0 chr9 74310624 74310651 -49765521 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1151 732 205 0 0 chr9 74310655 74310777 -49765395 - RSINE1 SINE B4 -41 124 3 5 1151 374 339 34 17 chr9 74311301 74311442 -49764730 + MLT1C LTR MaLR 22 165 -225 5 1151 429 36 0 0 chr9 74311442 74311497 -49764675 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1151 3422 51 2 8 chr9 74311497 74311892 -49764280 + MTA_Mm LTR MaLR 4 396 0 5 1151 374 339 34 17 chr9 74311892 74311926 -49764246 + MLT1C LTR MaLR 166 200 -190 5 1151 373 289 87 0 chr9 74311934 74312038 -49764134 + RSINE1 SINE B4 11 123 -42 5 1151 180 111 0 0 chr9 74312072 74312099 -49764073 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1151 261 303 11 63 chr9 74312157 74312252 -49763920 - RMER12 LTR ERVK -101 1221 1132 5 1151 709 228 147 60 chr9 74312334 74312608 -49763564 - RMER12 LTR ERVK -260 1062 807 5 1151 447 52 0 0 chr9 74312614 74312672 -49763500 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1151 679 151 25 16 chr9 74312676 74312797 -49763375 - RMER12 LTR ERVK -1197 125 4 5 1151 406 329 142 24 chr9 74312824 74313070 -49763102 + MLT1C LTR MaLR 173 447 -20 5 1151 474 285 45 68 chr9 74313791 74313968 -49762204 + B4A SINE B4 118 290 -2 5 1151 1273 56 0 0 chr9 74314021 74314165 -49762007 + B1_Mm SINE Alu 1 144 -3 5 1151 261 0 0 0 chr9 74314165 74314194 -49761978 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1151 198 0 0 0 chr9 74314340 74314362 -49761810 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1151 586 260 81 49 chr9 74315514 74315862 -49760310 + RLTR10D LTR ERVK 1 359 0 5 1151 987 153 185 0 chr9 74316717 74316906 -49759266 + URR1B DNA MER1_type 2 225 0 5 143 199 341 102 0 chr9 74317807 74317895 -49758277 + MIR SINE MIR 49 145 -117 5 1152 662 285 44 15 chr9 74318245 74318448 -49757724 + ID_B1 SINE B4 2 210 -14 5 1152 315 0 0 0 chr9 74319021 74319056 -49757116 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1152 527 324 20 0 chr9 74319452 74319600 -49756572 - B4A SINE B4 -3 289 139 5 1152 559 120 42 7 chr9 74319632 74319775 -49756397 + (TAGA)n Simple_repeat Simple_repeat 2 149 0 5 1152 307 161 194 0 chr9 74319816 74319878 -49756294 - B4A SINE B4 -217 75 2 5 1152 414 0 0 0 chr9 74320490 74320536 -49755636 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1152 304 320 119 10 chr9 74320547 74320648 -49755524 - PB1D7 SINE Alu -8 112 1 5 1152 404 288 50 11 chr9 74320648 74320688 -49755484 - ID SINE ID -209 83 38 5 1152 1360 219 144 16 chr9 74320694 74321061 -49755111 + MTD LTR MaLR 6 419 0 5 1152 33 25 0 0 chr9 74321272 74321312 -49754860 + AT_rich Low_complexity Low_complexity 1 40 0 5 1152 442 141 58 6 chr9 74321771 74321942 -49754230 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1152 955 158 205 0 chr9 74321962 74322133 -49754039 - B3 SINE B2 -10 206 1 5 1152 24 53 0 0 chr9 74322138 74322176 -49753996 + AT_rich Low_complexity Low_complexity 1 38 0 5 1152 507 229 8 106 chr9 74322225 74322357 -49753815 + RSINE1 SINE B4 47 165 0 5 1152 207 0 0 0 chr9 74322478 74322501 -49753671 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1152 446 0 0 18 chr9 74323159 74323214 -49752958 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1152 584 244 26 0 chr9 74323932 74324047 -49752125 - PB1D9 SINE Alu -1 119 2 5 1152 198 0 0 0 chr9 74324084 74324106 -49752066 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1152 23 0 0 0 chr9 74324137 74324160 -49752012 + AT_rich Low_complexity Low_complexity 1 23 0 5 1152 1911 231 4 40 chr9 74324160 74324616 -49751556 - Lx2B LINE L1 -5 6995 6556 5 1152 200 271 196 10 chr9 74325338 74325435 -49750737 + MIR SINE MIR 33 147 -61 5 1152 382 221 31 31 chr9 74325495 74325593 -49750579 + B4A SINE B4 195 292 0 5 1152 221 239 0 0 chr9 74325593 74325639 -49750533 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1152 203 283 0 0 chr9 74325649 74325702 -49750470 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 5 1152 392 0 0 20 chr9 74326832 74326881 -49749291 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1152 906 296 19 23 chr9 74327639 74327905 -49748267 + B4 SINE B4 5 269 -23 5 1152 234 0 0 0 chr9 74327907 74327933 -49748239 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1152 197 254 0 35 chr9 74328087 74328144 -49748028 - L2a LINE L2 0 3426 3372 5 1152 230 317 1 46 chr9 74328155 74328292 -49747880 - MIRm SINE MIR -39 169 51 5 1152 261 0 0 0 chr9 74328696 74328725 -49747447 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1152 1243 199 109 121 chr9 74328725 74329130 -49747042 + MTD LTR MaLR 14 413 -6 5 1152 188 171 244 47 chr9 74329895 74329981 -49746191 + L3 LINE CR1 3492 3594 -895 5 1152 746 73 9 0 chr9 74330267 74330377 -49745795 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 1152 2434 51 0 30 chr9 74330883 74331187 -49744985 - L1Md_F3 LINE L1 0 6584 6290 5 1152 405 308 69 0 chr9 74331225 74331384 -49744788 - MLT1B LTR MaLR -27 363 194 5 1152 399 41 0 0 chr9 74331403 74331452 -49744720 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1152 212 215 0 30 chr9 74331490 74331557 -49744615 + (CATA)n Simple_repeat Simple_repeat 2 66 0 5 1152 180 77 0 0 chr9 74331624 74331650 -49744522 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1152 2119 213 22 5 chr9 74331658 74332068 -49744104 + MTD LTR MaLR 1 417 -2 5 1152 849 104 22 9 chr9 74332098 74332322 -49743850 + (TAGA)n Simple_repeat Simple_repeat 1 227 0 5 1152 21 36 0 0 chr9 74332759 74332787 -49743385 + AT_rich Low_complexity Low_complexity 1 28 0 5 1152 649 269 71 47 chr9 74332921 74333132 -49743040 + B3 SINE B2 1 216 0 5 1152 1009 247 97 8 chr9 74333737 74333994 -49742178 - MTE2b LTR MaLR -35 344 65 5 1152 223 368 55 39 chr9 74334347 74334528 -49741644 + L4 LINE RTE 1716 1899 -130 5 1152 298 293 120 16 chr9 74336860 74336985 -49739187 + MIR3 SINE MIR 18 155 -53 5 1152 982 121 0 75 chr9 74337245 74337406 -49738766 + B1_Mur4 SINE Alu 1 149 -1 5 1152 296 320 13 45 chr9 74337490 74337644 -49738528 + L1MC3 LINE L1 7615 7763 -22 5 1152 503 16 0 15 chr9 74338169 74338234 -49737938 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1152 11820 175 59 15 chr9 74339760 74340812 -49735360 + Lx5 LINE L1 891 1994 -3883 5 1152 279 79 0 0 chr9 74340812 74340850 -49735322 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1152 11820 162 76 9 chr9 74340850 74342507 -49733665 + Lx5 LINE L1 1995 3755 -2122 5 1152 1199 81 23 6 chr9 74342506 74342680 -49733492 + Lx5 LINE L1 4364 4540 -1337 5 1152 2209 153 24 8 chr9 74342673 74343048 -49733124 + Lx5 LINE L1 5456 5836 -41 5 1152 561 100 0 0 chr9 74343245 74343335 -49732837 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1152 303 113 0 86 chr9 74343340 74343398 -49732774 - HAL1-3A_ME LINE L1 -830 2028 1976 5 1152 633 181 12 7 chr9 74343412 74343839 -49732333 + (TG)n Simple_repeat Simple_repeat 1 429 0 5 1152 5832 212 23 35 chr9 74344019 74344292 -49731880 + Lx5 LINE L1 5827 6100 -950 5 1152 987 117 0 0 chr9 74344292 74344472 -49731700 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1152 5832 212 23 35 chr9 74344472 74345437 -49730735 + Lx5 LINE L1 6101 7050 0 5 1152 5965 128 24 8 chr9 74345739 74346598 -49729574 + Lx3B LINE L1 6097 6969 -4 5 1152 905 296 165 59 chr9 74346705 74347438 -49728734 - Charlie1 DNA MER1_type -1921 860 50 5 1152 2123 165 61 68 chr9 74347583 74347979 -49728193 - ORR1B1 LTR MaLR -1 393 1 6 1152 946 261 118 20 chr9 74348372 74348745 -49727427 - MTE2a LTR MaLR 0 379 3 6 1152 1536 158 83 14 chr9 74350421 74350697 -49725475 + Lx2B LINE L1 6696 6990 -10 6 1152 210 71 0 0 chr9 74350700 74350728 -49725444 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1152 332 266 0 12 chr9 74350809 74350889 -49725283 + B4A SINE B4 1 79 -213 6 1152 219 128 51 0 chr9 74351191 74351230 -49724942 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 6 1152 180 111 0 0 chr9 74351845 74351872 -49724300 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1152 708 12 0 0 chr9 74351886 74351967 -49724205 + (GGGA)n Simple_repeat Simple_repeat 1 81 0 6 1152 814 285 116 22 chr9 74354056 74354418 -49721754 - MER20B DNA MER1_type -2 781 386 6 1152 2579 257 65 31 chr9 74354517 74354656 -49721516 - RMER1B Other Other 0 1066 933 6 1152 195 100 0 0 chr9 74354656 74354686 -49721486 + (CAA)n Simple_repeat Simple_repeat 1 30 0 6 1152 2579 257 65 31 chr9 74354686 74355221 -49720951 - RMER1B Other Other -134 932 369 6 1152 577 239 47 99 chr9 74355222 74355394 -49720778 + B3 SINE B2 27 189 -6 6 1152 22 56 0 0 chr9 74355831 74355867 -49720305 + AT_rich Low_complexity Low_complexity 1 36 0 6 1152 713 249 134 54 chr9 74355917 74356193 -49719979 - Lx8 LINE L1 -139 7334 7037 6 1152 1040 64 7 0 chr9 74356205 74356346 -49719826 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 6 1152 234 195 0 0 chr9 74356381 74356463 -49719709 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 1152 212 288 17 0 chr9 74357600 74357659 -49718513 + CT-rich Low_complexity Low_complexity 4 63 0 6 1152 4035 54 6 8 chr9 74358049 74358537 -49717635 + L1Md_F2 LINE L1 6096 6582 0 6 1152 263 282 70 47 chr9 74359922 74360093 -49716079 + L1MC LINE L1 5675 5849 -2033 6 1152 719 197 209 22 chr9 74360244 74360426 -49715746 + B3 SINE B2 1 216 0 6 1152 195 42 0 0 chr9 74360435 74360459 -49715713 + (TAA)n Simple_repeat Simple_repeat 2 25 0 6 1152 774 292 11 0 chr9 74361128 74361306 -49714866 - B3A SINE B2 -18 180 1 6 1152 239 62 0 0 chr9 74363044 74363076 -49713096 - MARNA DNA Mariner -343 243 212 6 1152 634 252 110 23 chr9 74363288 74363507 -49712665 - Lx8 LINE L1 0 7473 7236 6 1152 253 222 102 82 chr9 74363509 74363715 -49712457 - Lx7 LINE L1 0 7696 7487 6 1152 444 37 0 0 chr9 74363734 74363788 -49712384 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 6 1152 2936 263 10 45 chr9 74363796 74364619 -49711553 - Lx7 LINE L1 -388 7308 6515 6 1152 231 256 0 0 chr9 74364660 74364703 -49711469 - Lx7 LINE L1 -1186 6510 6468 6 1152 344 280 95 108 chr9 74364811 74365199 -49710973 + RLTR11A2 LTR ERVK 116 498 -29 6 1152 858 287 38 26 chr9 74365222 74365487 -49710685 - Lx7 LINE L1 -1223 6473 6206 6 1152 7001 48 1 4 chr9 74365489 74366300 -49709872 - L1Md_F2 LINE L1 -3 6579 5771 6 1152 9023 32 5 2 chr9 74366300 74367356 -49708816 + L1_Mm LINE L1 4404 5464 -419 6 1152 436 272 80 21 chr9 74367375 74367563 -49708609 - Lx7 LINE L1 -1514 6182 5984 6 1152 365 292 0 0 chr9 74367562 74367651 -49708521 - Lx8 LINE L1 -218 7255 7167 6 1152 1278 35 0 0 chr9 74367654 74367796 -49708376 - B1_Mm SINE Alu -5 142 1 6 1152 283 244 70 0 chr9 74367971 74368084 -49708088 + MIR SINE MIR 67 193 -83 6 1152 261 0 0 0 chr9 74368171 74368200 -49707972 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1152 311 171 0 28 chr9 74369764 74369836 -49706336 + GA-rich Low_complexity Low_complexity 3 72 0 6 1152 217 158 61 0 chr9 74369874 74369956 -49706216 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 6 1152 652 257 20 7 chr9 74370396 74370545 -49705627 - RSINE1 SINE B4 -14 151 1 6 1152 788 254 65 0 chr9 74370818 74370987 -49705185 + B3A SINE B2 3 182 -16 6 1152 2613 97 6 3 chr9 74371090 74371432 -49704740 - L1_Mus4 LINE L1 -5 6631 6289 6 1152 1416 189 152 30 chr9 74371951 74372279 -49703893 - ORR1D1 LTR MaLR -4 370 3 6 1152 551 284 104 6 chr9 74372862 74373025 -49703147 + B3A SINE B2 1 179 -19 6 1152 26 0 0 0 chr9 74373388 74373414 -49702758 + AT_rich Low_complexity Low_complexity 1 26 0 6 1152 1383 104 11 0 chr9 74373844 74374026 -49702146 - B2_Mm1t SINE B2 -8 185 2 6 1152 3829 92 30 15 chr9 74374491 74374926 -49701246 + Lx2 LINE L1 6440 6883 -114 6 1152 225 0 0 0 chr9 74374926 74374951 -49701221 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 6 1152 3829 92 30 15 chr9 74374951 74375056 -49701116 + Lx2 LINE L1 6884 6988 -9 6 1152 1291 289 41 26 chr9 74375170 74375578 -49700594 + MTD LTR MaLR 1 404 -15 6 1152 326 336 15 46 chr9 74375697 74375828 -49700344 + MLT1C LTR MaLR 331 457 -10 6 1152 1486 182 39 48 chr9 74375937 74376248 -49699924 - Lx5 LINE L1 -4 7046 6739 6 1152 494 172 0 10 chr9 74376274 74376374 -49699798 + GA-rich Low_complexity Low_complexity 3 101 0 6 1152 357 24 0 0 chr9 74376858 74376900 -49699272 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1152 243 0 0 0 chr9 74376914 74376941 -49699231 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1152 1007 263 71 12 chr9 74376941 74377195 -49698977 - B4A SINE B4 -23 269 1 6 1152 414 0 0 0 chr9 74377220 74377266 -49698906 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1152 264 59 0 0 chr9 74377269 74377303 -49698869 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1152 316 331 22 36 chr9 74377766 74377904 -49698268 - MIRc SINE MIR -114 154 19 6 1152 885 254 67 43 chr9 74379071 74379512 -49696660 + Lx7 LINE L1 7091 7680 -16 6 1152 447 19 0 0 chr9 74379599 74379651 -49696521 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1152 357 82 0 0 chr9 74379712 74379761 -49696411 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1152 590 314 13 0 chr9 74381738 74381894 -49694278 + RSINE1 SINE B4 4 161 -4 6 1152 411 268 0 0 chr9 74384560 74384717 -49691455 + (CA)n Simple_repeat Simple_repeat 1 157 0 6 1152 189 0 0 0 chr9 74385264 74385285 -49690887 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1152 745 295 23 0 chr9 74385690 74385907 -49690265 + ID_B1 SINE B4 2 223 -1 6 1152 27 0 0 0 chr9 74386793 74386820 -49689352 + AT_rich Low_complexity Low_complexity 1 27 0 6 1152 247 273 39 47 chr9 74386829 74386956 -49689216 + L1MA8 LINE L1 6156 6281 -10 6 1152 25 0 0 0 chr9 74386965 74386990 -49689182 + AT_rich Low_complexity Low_complexity 1 25 0 6 1152 483 18 0 0 chr9 74387817 74387873 -49688299 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1152 448 279 23 62 chr9 74388276 74388406 -49687766 - ORR1E LTR MaLR -17 362 238 6 1152 279 296 28 0 chr9 74388467 74388538 -49687634 + RMER30 DNA MER1_type 2 74 -128 6 1152 495 165 44 0 chr9 74388626 74388717 -49687455 - ORR1E LTR MaLR -264 95 1 6 1152 28 29 0 0 chr9 74389516 74389551 -49686621 + AT_rich Low_complexity Low_complexity 1 35 0 6 1152 1200 325 22 20 chr9 74389603 74390055 -49686117 - Lx8 LINE L1 -215 7258 6806 6 1152 242 324 19 117 chr9 74391234 74391388 -49684784 + B1_Mus2 SINE Alu 1 139 -8 6 1152 508 260 102 8 chr9 74391309 74391437 -49684735 + B4 SINE B4 138 277 -15 6 1152 195 42 0 0 chr9 74391462 74391486 -49684686 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1152 1440 187 53 13 chr9 74391797 74392101 -49684071 - Lx5 LINE L1 0 7050 6735 6 1152 550 109 20 0 chr9 74392272 74392373 -49683799 + (CA)n Simple_repeat Simple_repeat 2 104 0 6 1152 1028 311 96 19 chr9 74392972 74393389 -49682783 + Lx8 LINE L1 7012 7460 -13 6 1152 4314 101 32 20 chr9 74393546 74394140 -49682032 + MT2B LTR ERVL 1 601 0 6 1152 303 232 29 0 chr9 74394180 74394249 -49681923 + MIRc SINE MIR 83 153 -115 6 1152 2332 203 21 63 chr9 74394261 74394818 -49681354 + RMER5 LTR ERV1 1 534 0 6 1152 1080 75 0 0 chr9 74395800 74395947 -49680225 + (GA)n Simple_repeat Simple_repeat 2 148 0 6 1152 494 299 33 17 chr9 74396281 74396461 -49679711 - Charlie18a DNA MER1_type -157 185 3 6 1152 304 308 208 57 chr9 74397778 74398043 -49678129 - MLT1J2 LTR MaLR -48 400 96 6 1152 374 373 60 68 chr9 74398420 74398670 -49677502 - B4A SINE B4 -41 251 4 6 1152 249 171 0 12 chr9 74399016 74399073 -49677099 + B2_Mm1t SINE B2 3 57 -138 6 1152 588 77 51 0 chr9 74400055 74400172 -49676000 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 6 1152 532 263 0 9 chr9 74400743 74400858 -49675314 - PB1D10 SINE Alu -2 115 2 6 1152 207 0 0 0 chr9 74400892 74400915 -49675257 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1152 201 108 0 0 chr9 74401422 74401459 -49674713 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1152 696 107 0 0 chr9 74401459 74401562 -49674610 + (TA)n Simple_repeat Simple_repeat 2 104 0 6 1152 225 0 0 0 chr9 74401562 74401587 -49674585 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1152 354 333 102 36 chr9 74401984 74402180 -49673992 + MIR SINE MIR 33 241 -21 6 1152 542 252 0 63 chr9 74402445 74402572 -49673600 + PB1D7 SINE Alu 1 119 -1 6 1152 229 231 15 30 chr9 74403152 74403219 -49672953 - RLTR12A LTR ERVK -35 533 468 6 1152 779 306 10 0 chr9 74404493 74404702 -49671470 + ID_B1 SINE B4 4 214 -10 6 1152 196 303 26 13 chr9 74405349 74405426 -49670746 + MIRc SINE MIR 117 194 -74 6 1152 771 276 119 9 chr9 74405648 74405867 -49670305 + MTD LTR MaLR 174 416 -3 6 1152 537 299 39 34 chr9 74405872 74406076 -49670096 + RMER5 LTR ERV1 174 378 -156 6 1152 207 0 0 0 chr9 74406097 74406120 -49670052 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1152 417 250 55 9 chr9 74406120 74406229 -49669943 + RMER5 LTR ERV1 387 500 -34 6 1152 342 0 0 0 chr9 74406315 74406353 -49669819 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1152 221 231 15 30 chr9 74406727 74406794 -49669378 + MIR SINE MIR 101 166 -96 6 1152 434 269 19 54 chr9 74407124 74407302 -49668870 - B4 SINE B4 0 165 1 6 1152 855 245 59 20 chr9 74407572 74407753 -49668419 + B3 SINE B2 5 195 -21 7 1152 3756 26 105 0 chr9 74407753 74408183 -49667989 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1152 855 245 59 20 chr9 74408183 74408205 -49667967 + B3 SINE B2 196 216 0 7 1152 211 234 0 0 chr9 74408532 74408579 -49667593 + T-rich Low_complexity Low_complexity 1 47 0 7 1152 1408 138 4 4 chr9 74408583 74408808 -49667364 - Lx LINE L1 -1 6653 6429 7 1152 186 43 0 0 chr9 74410263 74410286 -49665886 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 7 1152 52 0 0 0 chr9 74410557 74410609 -49665563 + AT_rich Low_complexity Low_complexity 1 52 0 7 1152 468 106 0 0 chr9 74410739 74410824 -49665348 + (CATA)n Simple_repeat Simple_repeat 1 85 0 7 1152 759 258 0 30 chr9 74410833 74411001 -49665171 + RSINE1 SINE B4 3 165 0 7 1152 365 305 0 21 chr9 74411139 74411283 -49664889 + (CATATA)n Simple_repeat Simple_repeat 4 144 0 7 1152 313 337 9 19 chr9 74411882 74411988 -49664184 + B4A SINE B4 21 125 -167 7 1152 477 0 0 0 chr9 74412041 74412094 -49664078 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1152 332 324 100 13 chr9 74412100 74412250 -49663922 + B4A SINE B4 130 292 0 7 1152 22 0 0 0 chr9 74412306 74412328 -49663844 + AT_rich Low_complexity Low_complexity 1 22 0 7 1152 212 289 15 97 chr9 74413288 74413422 -49662750 - MIRb SINE MIR -7 261 139 7 1152 21 0 0 0 chr9 74413422 74413443 -49662729 + AT_rich Low_complexity Low_complexity 1 21 0 7 1152 576 283 102 61 chr9 74413725 74413904 -49662268 + B3A SINE B2 2 189 -27 7 1152 630 81 27 0 chr9 74413904 74414015 -49662157 + (TA)n Simple_repeat Simple_repeat 1 114 0 7 1152 439 283 102 61 chr9 74414015 74414031 -49662141 + B3 SINE B2 190 205 -11 7 1152 1118 94 0 2 chr9 74414098 74414252 -49661920 + L1Md_F2 LINE L1 5449 5587 -607 7 1152 8327 55 7 4 chr9 74414253 74415235 -49660937 + L1Md_F2 LINE L1 5588 6572 -10 7 1152 892 293 50 32 chr9 74415416 74415703 -49660469 + Lx9 LINE L1 7061 7357 -287 7 1152 396 0 0 0 chr9 74415703 74415747 -49660425 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1152 892 293 50 32 chr9 74415747 74415798 -49660374 + Lx9 LINE L1 7358 7405 -239 7 1152 436 31 30 15 chr9 74416267 74416333 -49659839 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 7 1152 360 176 0 0 chr9 74416435 74416503 -49659669 + GA-rich Low_complexity Low_complexity 2 69 0 7 1152 1368 67 0 0 chr9 74416503 74416683 -49659489 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1152 385 340 79 34 chr9 74416878 74417005 -49659167 + Lx8 LINE L1 7196 7328 -145 7 1152 195 100 0 0 chr9 74417005 74417035 -49659137 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1152 385 340 79 34 chr9 74417035 74417172 -49659000 + Lx8 LINE L1 7329 7472 -1 7 1152 6838 122 11 2 chr9 74418248 74419466 -49656706 - Lx LINE L1 -1 6653 5421 7 1152 315 277 21 21 chr9 74420385 74420481 -49655691 + B3 SINE B2 118 213 -3 7 1152 424 204 93 21 chr9 74420711 74420843 -49655329 + Lx5 LINE L1 6893 7034 -16 7 1152 597 14 0 0 chr9 74420843 74420913 -49655259 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 7 1152 669 301 49 39 chr9 74421502 74421706 -49654466 + ID_B1 SINE B4 15 220 -4 7 1152 611 227 144 46 chr9 74421719 74421913 -49654259 + B3 SINE B2 1 213 -3 7 1152 1682 188 43 35 chr9 74422673 74423043 -49653129 - ORR1D1 LTR MaLR -1 373 1 7 1152 231 386 61 0 chr9 74424914 74425028 -49651144 - LTR88a LTR Gypsy -20 796 676 7 1152 573 309 72 10 chr9 74425288 74425497 -49650675 + MTD LTR MaLR 1 222 -197 7 1152 1785 148 39 22 chr9 74425534 74425845 -49650327 - MTB_Mm LTR MaLR -91 316 1 7 1152 780 212 81 0 chr9 74425854 74426014 -49650158 + MTD LTR MaLR 221 393 -26 7 1152 313 303 65 33 chr9 74426050 74426142 -49650030 + B4 SINE B4 52 146 -146 7 1152 276 309 124 31 chr9 74426086 74426183 -49649989 + PB1D9 SINE Alu 5 110 -10 7 1152 195 42 0 0 chr9 74426203 74426227 -49649945 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1152 249 140 0 0 chr9 74426227 74426284 -49649888 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1152 643 299 46 5 chr9 74426355 74426550 -49649622 + B3 SINE B2 1 203 -13 7 1152 198 0 0 0 chr9 74426586 74426608 -49649564 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7 1152 1272 78 66 0 chr9 74426608 74426774 -49649398 - B2_Mm1t SINE B2 -15 178 2 7 1152 987 272 77 20 chr9 74426897 74427556 -49648616 + L1M2 LINE L1 3973 4957 -1186 7 1152 1399 14 7 18 chr9 74427620 74427901 -49648271 + (TG)n Simple_repeat Simple_repeat 1 277 0 7 1152 560 259 92 43 chr9 74427904 74428045 -49648127 - B3 SINE B2 -67 149 2 7 1152 288 295 24 8 chr9 74428932 74429055 -49647117 + L1M2 LINE L1 1896 2020 -4829 7 1152 597 14 0 0 chr9 74429227 74429297 -49646875 + (GA)n Simple_repeat Simple_repeat 1 70 0 7 1152 1896 61 28 12 chr9 74429304 74429553 -49646619 - L1_Mus1 LINE L1 -571 5996 5744 7 1152 4908 62 2 2 chr9 74429553 74430131 -49646041 + L1_Mus1 LINE L1 5989 6566 -1 7 1152 522 0 0 0 chr9 74430696 74430754 -49645418 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 7 1152 324 290 17 23 chr9 74430755 74430928 -49645244 + L1_Mur3 LINE L1 3034 3205 -2675 7 1152 1797 311 61 40 chr9 74430932 74431187 -49644985 + L1M2 LINE L1 4458 4716 -2129 7 1152 2500 134 77 0 chr9 74431187 74431553 -49644619 - ORR1B1 LTR MaLR 0 394 1 7 1152 1797 311 61 40 chr9 74431553 74432316 -49643856 + L1M2 LINE L1 4717 5497 -1348 7 1152 1376 201 77 68 chr9 74432316 74432489 -49643683 + ORR1C2 LTR MaLR 17 184 -200 7 1152 894 118 19 0 chr9 74432489 74432650 -49643522 + (TCTA)n Simple_repeat Simple_repeat 1 164 0 7 1152 1376 201 77 68 chr9 74432650 74432829 -49643343 + ORR1C2 LTR MaLR 185 372 -12 7 1152 1638 321 34 40 chr9 74432836 74433717 -49642455 + L1_Mur3 LINE L1 4798 5673 -207 7 1152 479 342 13 0 chr9 74434306 74434455 -49641717 + Lx8 LINE L1 7116 7266 -207 7 1152 330 196 0 0 chr9 74434457 74434513 -49641659 + RMER15 LTR ERVL 405 460 -115 7 1152 253 222 12 12 chr9 74434616 74434698 -49641474 + L1MA5 LINE L1 6213 6294 -6 7 1152 339 213 144 31 chr9 74435533 74435630 -49640542 - B4 SINE B4 -62 230 123 7 1152 221 163 0 0 chr9 74436115 74436158 -49640014 + CT-rich Low_complexity Low_complexity 3 45 0 7 1152 1304 48 0 6 chr9 74436160 74436329 -49639843 + (TTC)n Simple_repeat Simple_repeat 3 170 0 7 1152 690 13 0 0 chr9 74436329 74436408 -49639764 + (TC)n Simple_repeat Simple_repeat 1 79 0 7 1152 436 265 180 30 chr9 74436414 74436581 -49639591 - B3A SINE B2 -5 193 2 7 1152 361 211 176 134 chr9 74436955 74437097 -49639075 - MTE2a LTR MaLR -231 148 1 7 1152 365 123 0 15 chr9 74437105 74437171 -49639001 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1152 453 276 92 0 chr9 74437784 74437882 -49638290 + PB1D9 SINE Alu 2 108 -12 7 1152 204 40 0 0 chr9 74437882 74437907 -49638265 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 7 1152 414 0 0 0 chr9 74438461 74438507 -49637665 + (GGATG)n Simple_repeat Simple_repeat 1 46 0 7 1152 355 234 125 9 chr9 74438945 74439057 -49637115 - Lx8 LINE L1 -153 7320 7196 7 1152 477 0 0 0 chr9 74439883 74439936 -49636236 + (GA)n Simple_repeat Simple_repeat 1 53 0 7 1152 25 31 0 0 chr9 74440203 74440235 -49635937 + AT_rich Low_complexity Low_complexity 1 32 0 7 1152 184 274 20 0 chr9 74440241 74440292 -49635880 - L3 LINE CR1 -210 4279 4228 7 1152 225 0 0 0 chr9 74441486 74441511 -49634661 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1152 699 150 199 2 chr9 74441867 74442033 -49634139 + B3 SINE B2 19 216 0 7 1152 904 166 58 12 chr9 74442191 74442362 -49633810 + Lx5 LINE L1 6865 7043 -7 7 1152 19998 200 63 45 chr9 74442849 74444052 -49632120 + L1_Mur3 LINE L1 301 1587 -4293 7 1152 1209 56 14 0 chr9 74444052 74444196 -49631976 + B1_Mm SINE Alu 2 147 0 7 1152 19998 163 55 78 chr9 74444196 74445097 -49631075 + L1_Mur3 LINE L1 1588 2512 -3368 7 1152 233 192 50 88 chr9 74445097 74445177 -49630995 - Tigger7 DNA MER2_type -992 1499 1423 7 1152 19998 163 55 78 chr9 74445177 74447228 -49628944 + L1_Mur3 LINE L1 2513 4621 -1259 7 1152 351 0 0 0 chr9 74447228 74447267 -49628905 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1152 19998 163 55 78 chr9 74447267 74447934 -49628238 + L1_Mur3 LINE L1 4622 5286 -594 7 1152 757 203 0 8 chr9 74447934 74448063 -49628109 + B1_Mur2 SINE Alu 9 136 -13 7 1152 258 353 74 81 chr9 74447941 74448089 -49628083 + B4A SINE B4 100 246 -46 7 1152 19998 163 55 78 chr9 74448089 74448568 -49627604 + L1_Mur3 LINE L1 5287 5766 -114 7 1152 717 73 0 0 chr9 74448589 74448685 -49627487 + (TA)n Simple_repeat Simple_repeat 1 96 0 7 1152 301 221 59 0 chr9 74448685 74448753 -49627419 + Lx6 LINE L1 5876 5947 -1513 7 1152 581 231 5 0 chr9 74448737 74448866 -49627306 + Lx7 LINE L1 5656 5823 -350 7 17 756 61 0 0 chr9 74448872 74448970 -49627202 + (TA)n Simple_repeat Simple_repeat 1 98 0 7 1153 547 249 132 47 chr9 74448970 74449160 -49627012 + Lx7 LINE L1 5876 6081 -1615 7 1153 791 263 10 31 chr9 74449160 74449352 -49626820 - B3 SINE B2 -22 194 7 7 1153 180 0 0 0 chr9 74450721 74450741 -49625431 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1153 1034 297 70 40 chr9 74451251 74451477 -49624695 + MTD LTR MaLR 5 230 -189 7 1153 3936 175 69 6 chr9 74451477 74452128 -49624044 + RLTR17 LTR ERVK 1 692 0 7 1153 1034 297 70 40 chr9 74452128 74452304 -49623868 + MTD LTR MaLR 231 419 0 7 1153 392 291 82 62 chr9 74452598 74452792 -49623380 + L1M2 LINE L1 4692 4889 -1254 7 1153 300 276 30 82 chr9 74452798 74452932 -49623240 + L1M3 LINE L1 4587 4713 -1427 7 1153 1317 310 79 63 chr9 74452959 74454110 -49622062 + L1MA5A LINE L1 4808 6022 -275 7 1153 581 252 114 3 chr9 74454628 74454916 -49621256 + L1M2 LINE L1 5290 5613 -678 7 1153 1572 259 50 11 chr9 74455167 74455538 -49620634 - MTD LTR MaLR -2 417 32 7 1153 3023 100 26 31 chr9 74455538 74456028 -49620144 - RMER16 LTR ERVK 0 533 3 7 1153 666 246 15 0 chr9 74456066 74456196 -49619976 + B1_Mur1 SINE Alu 16 147 -2 7 1153 555 202 249 20 chr9 74457431 74457628 -49618544 + L1MC LINE L1 5507 5748 -585 7 1153 185 0 40 0 chr9 74457684 74457709 -49618463 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1153 312 27 0 0 chr9 74457839 74457876 -49618296 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 7 1153 1382 258 54 3 chr9 74458131 74458466 -49617706 - ORR1E LTR MaLR -2 357 6 7 1153 591 247 38 23 chr9 74458925 74459110 -49617062 - B3A SINE B2 -5 188 2 7 1153 21 0 0 0 chr9 74460897 74460918 -49615254 + AT_rich Low_complexity Low_complexity 1 21 0 7 1153 528 45 0 0 chr9 74460922 74460989 -49615183 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1153 5345 42 2 3 chr9 74461113 74461729 -49614443 - L1Md_F2 LINE L1 0 6582 5968 8 1153 34469 63 14 16 chr9 74461729 74463090 -49613082 - L1Md_F2 LINE L1 -35 6547 5175 8 1153 209 33 33 0 chr9 74463090 74463120 -49613052 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1153 34469 68 6 48 chr9 74463120 74463154 -49613018 - L1_Mm LINE L1 -709 5174 5174 8 1153 3696 69 35 0 chr9 74463154 74463616 -49612556 - L1Md_F3 LINE L1 0 6584 6107 8 1153 34469 73 16 41 chr9 74463616 74468421 -49607751 - L1Md_F2 LINE L1 -709 5174 480 8 1153 471 149 0 0 chr9 74468421 74468495 -49607677 - L1VL1 LINE L1 -6348 74 1 8 1153 930 263 57 5 chr9 74468633 74468843 -49607329 - ID_B1 SINE B4 -3 221 1 8 1153 539 294 0 8 chr9 74469118 74469238 -49606934 - B4A SINE B4 -173 119 1 8 1153 827 290 4 53 chr9 74469238 74469470 -49606702 - B4A SINE B4 -71 221 2 8 1153 224 292 92 0 chr9 74469817 74469882 -49606290 + MIR3 SINE MIR 116 186 -22 8 1153 200 279 0 0 chr9 74470417 74470460 -49605712 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1153 1748 151 0 0 chr9 74471531 74471810 -49604362 - L1_Mm LINE L1 -508 5375 5097 8 1153 243 276 179 9 chr9 74471957 74472063 -49604109 + MIRb SINE MIR 93 216 -52 8 1153 203 294 147 0 chr9 74472113 74472222 -49603950 + L2a LINE L2 3276 3400 -26 8 1153 4792 137 4 10 chr9 74472991 74473765 -49602407 - L1_Mur2 LINE L1 -869 5008 4240 8 1153 36 0 0 0 chr9 74473848 74473884 -49602288 + AT_rich Low_complexity Low_complexity 1 36 0 8 1153 207 0 0 0 chr9 74474488 74474511 -49601661 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 8 1153 765 0 0 0 chr9 74475461 74475546 -49600626 + (GAA)n Simple_repeat Simple_repeat 3 87 0 8 1153 225 290 0 0 chr9 74475747 74475809 -49600363 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1153 37336 36 0 0 chr9 74475938 74481561 -49594611 + L1Md_Gf LINE L1 3 5723 -163 8 1153 3205 14 42 3 chr9 74481561 74481914 -49594258 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1153 56553 22 17 3 chr9 74481914 74488301 -49587871 + IAPEz-int LTR ERVK 8 6481 0 8 1153 3205 14 42 3 chr9 74488301 74488654 -49587518 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1153 8310 7 0 0 chr9 74488654 74489522 -49586650 + L1Md_T LINE L1 5715 6582 0 8 1153 1649 253 38 23 chr9 74489666 74490063 -49586109 - MTD LTR MaLR -16 403 1 8 1153 922 281 115 19 chr9 74491202 74491514 -49584658 - ORR1E LTR MaLR -17 342 1 8 1153 972 248 130 15 chr9 74492195 74492519 -49583653 - MTEb LTR MaLR -18 361 1 8 1153 531 0 0 0 chr9 74492956 74493015 -49583157 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 1153 765 326 17 49 chr9 74494093 74494380 -49581792 - B4 SINE B4 -14 278 1 8 1153 32 0 0 0 chr9 74494409 74494441 -49581731 + AT_rich Low_complexity Low_complexity 1 32 0 8 1153 734 342 17 31 chr9 74494627 74494914 -49581258 - B4A SINE B4 -4 288 6 8 1153 2219 158 46 39 chr9 74495830 74496005 -49580167 + ORR1B1 LTR MaLR 1 184 -210 8 1153 387 0 0 0 chr9 74496005 74496048 -49580124 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1153 2219 158 46 39 chr9 74496048 74496261 -49579911 + ORR1B1 LTR MaLR 185 392 -2 8 1153 1426 219 18 7 chr9 74497517 74497789 -49578383 - Lx5 LINE L1 -2 7048 6774 8 1153 644 259 18 37 chr9 74498725 74498775 -49577397 + ID SINE ID 31 77 -147 8 1153 332 275 22 104 chr9 74498775 74498909 -49577263 + B1F SINE Alu 1 123 -26 8 1153 537 82 0 0 chr9 74499216 74499289 -49576883 + L1_Mus1 LINE L1 6495 6567 0 8 1153 28 29 0 0 chr9 74499600 74499635 -49576537 + AT_rich Low_complexity Low_complexity 1 35 0 8 1153 482 294 39 31 chr9 74500529 74500659 -49575513 + B4 SINE B4 162 292 0 1 1153 262 67 44 0 chr9 74500687 74500732 -49575440 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1153 228 292 69 0 chr9 74500844 74500916 -49575256 - MLT1D LTR MaLR -174 331 255 3 1153 336 185 18 9 chr9 74500928 74500961 -49575211 + polypyrimidine Low_complexity Low_complexity 79 111 0 4 1153 940 114 23 6 chr9 74500961 74501138 -49575034 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1153 336 185 18 9 chr9 74501138 74501213 -49574959 + CT-rich Low_complexity Low_complexity 2 78 0 6 1153 483 18 0 0 chr9 74503088 74503144 -49573028 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1153 255 149 171 39 chr9 74503320 74503400 -49572772 + B4 SINE B4 1 92 -73 8 1153 243 330 87 0 chr9 74503604 74503719 -49572453 - MIR SINE MIR -95 167 43 9 1153 504 0 0 0 chr9 74504191 74504247 -49571925 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1153 331 253 143 51 chr9 74505888 74506084 -49570088 - MIRb SINE MIR -16 252 39 1 1153 708 198 181 0 chr9 74506508 74506690 -49569482 + B3 SINE B2 2 216 0 1 1153 447 275 116 17 chr9 74507050 74507283 -49568889 - L1M3 LINE L1 -944 5196 4941 1 1153 549 175 0 0 chr9 74507307 74507410 -49568762 + CT-rich Low_complexity Low_complexity 4 106 0 1 1153 750 294 72 35 chr9 74507426 74508006 -49568166 - L1M3 LINE L1 -1226 4917 4306 1 1153 27 0 0 0 chr9 74508041 74508068 -49568104 + AT_rich Low_complexity Low_complexity 1 27 0 1 1153 357 286 48 2 chr9 74508311 74508431 -49567741 + B3A SINE B2 11 136 -62 1 1153 1020 142 16 42 chr9 74509160 74509351 -49566821 + B2_Mm2 SINE B2 2 187 -8 1 1153 400 293 59 15 chr9 74511558 74511693 -49564479 + B3A SINE B2 2 142 -56 1 1153 273 281 16 0 chr9 74511692 74511756 -49564416 + B3A SINE B2 96 160 -38 1 1153 333 0 0 0 chr9 74511760 74511797 -49564375 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1153 1398 248 153 19 chr9 74511870 74512437 -49563735 - L1M3 LINE L1 -1045 5095 4453 2 1153 41891 6 0 0 chr9 74512534 74518646 -49557526 - L1Md_A LINE L1 0 6582 469 2 1153 330 247 26 0 chr9 74518650 74518727 -49557445 - ID2 SINE ID -3 80 2 2 1153 193 145 17 52 chr9 74520045 74520103 -49556069 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 2 1153 279 280 71 76 chr9 74521484 74521681 -49554491 + Lx8 LINE L1 7271 7466 -7 2 1153 22 35 0 0 chr9 74521690 74521719 -49554453 + AT_rich Low_complexity Low_complexity 1 29 0 2 1153 274 340 37 21 chr9 74522483 74522672 -49553500 + L1M2 LINE L1 3924 4115 -2028 2 1153 1399 258 36 13 chr9 74522672 74523065 -49553107 - MTD LTR MaLR 0 419 18 2 1153 308 242 109 19 chr9 74523093 74523249 -49552923 + L1M2 LINE L1 4117 4286 -1854 2 1153 459 241 107 91 chr9 74523253 74523440 -49552732 + B3A SINE B2 3 192 -3 2 1153 1049 278 46 58 chr9 74523588 74524019 -49552153 + L1M2 LINE L1 4469 4894 -1249 2 1153 8890 58 5 3 chr9 74524716 74525831 -49550341 - L1_Mus1 LINE L1 -1 6566 5452 3 1153 3490 30 0 0 chr9 74525831 74526232 -49549940 - L1Md_A LINE L1 -1 6581 6181 3 1153 8890 102 16 0 chr9 74526232 74527058 -49549114 - L1_Mus1 LINE L1 -432 5451 4607 3 1153 285 273 15 0 chr9 74527193 74527259 -49548913 - Lx9 LINE L1 -992 6652 6586 3 1153 1378 295 84 22 chr9 74527282 74527792 -49548380 + Lx9 LINE L1 6703 7244 -400 3 1153 673 300 0 0 chr9 74528942 74529112 -49547060 + B3A SINE B2 6 175 -23 3 1153 798 327 86 4 chr9 74529380 74529647 -49546525 + B4A SINE B4 2 290 -2 3 1153 443 246 8 8 chr9 74530228 74530351 -49545821 + L1MA4 LINE L1 5800 5922 -378 3 1153 386 81 32 0 chr9 74530390 74530452 -49545720 + (TATG)n Simple_repeat Simple_repeat 4 67 0 3 1153 873 341 83 47 chr9 74530589 74531191 -49544981 - MLT1E1A LTR MaLR -50 630 7 3 1153 219 150 0 0 chr9 74531368 74531408 -49544764 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 3 1153 195 129 0 0 chr9 74531749 74531780 -49544392 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1153 325 288 75 35 chr9 74531991 74532164 -49544008 + Charlie4a DNA MER1_type 29 208 -300 4 1153 227 294 15 0 chr9 74532169 74532237 -49543935 - ID2 SINE ID -7 76 8 4 1153 38655 13 1 7 chr9 74532374 74537622 -49538550 + L1Md_A LINE L1 374 5586 -297 4 1153 8969 14 0 0 chr9 74537622 74538618 -49537554 + L1Md_A LINE L1 5587 6582 0 4 1153 591 15 0 0 chr9 74538673 74538741 -49537431 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1153 273 287 110 0 chr9 74538750 74538886 -49537286 + Charlie4a DNA MER1_type 341 491 -17 4 1153 535 281 13 32 chr9 74540018 74540176 -49535996 - ORR1D2 LTR MaLR -95 275 121 4 1153 3183 294 83 15 chr9 74542013 74543189 -49532983 + Lx8 LINE L1 6214 7469 -4 4 1153 252 0 0 0 chr9 74543524 74543552 -49532620 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1153 182 261 141 28 chr9 74544203 74544274 -49531898 - L2c LINE L2 -10 3377 3299 4 1153 1017 150 0 0 chr9 74544504 74544684 -49531488 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1153 573 172 0 0 chr9 74544688 74544810 -49531362 + GA-rich Low_complexity Low_complexity 2 123 0 5 1153 399 211 0 22 chr9 74546949 74547041 -49529131 + L1M3 LINE L1 5529 5618 -550 5 1153 195 69 0 0 chr9 74547045 74547074 -49529098 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 5 1153 2264 51 50 3 chr9 74547588 74547885 -49528287 - L1_Mus1 LINE L1 -2 6565 6255 5 1153 262 32 0 0 chr9 74547885 74547916 -49528256 + L1_Mus1 LINE L1 6200 6230 -336 5 1153 259 354 62 0 chr9 74547946 74548059 -49528113 + MIRc SINE MIR 99 218 -50 5 1153 447 19 0 0 chr9 74548353 74548405 -49527767 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1153 550 271 169 21 chr9 74548432 74548669 -49527503 - B4 SINE B4 -19 273 2 5 1153 204 283 0 0 chr9 74548880 74548926 -49527246 + CT-rich Low_complexity Low_complexity 4 49 0 5 1153 326 131 33 0 chr9 74551391 74551452 -49524720 + GA-rich Low_complexity Low_complexity 4 66 0 5 1153 201 213 0 0 chr9 74551500 74551547 -49524625 + GA-rich Low_complexity Low_complexity 2 48 0 5 1153 24 67 0 0 chr9 74551580 74551625 -49524547 + AT_rich Low_complexity Low_complexity 1 45 0 5 1153 743 266 157 11 chr9 74551780 74552054 -49524118 + LFSINE_Vert SINE SINE 10 323 -136 6 1153 573 252 16 82 chr9 74552712 74552942 -49523230 + B3A SINE B2 1 206 -10 6 1153 323 275 5 5 chr9 74552943 74553157 -49523015 + (CA)n Simple_repeat Simple_repeat 1 214 0 6 1153 209 333 0 0 chr9 74553160 74553235 -49522937 + (CATA)n Simple_repeat Simple_repeat 3 77 0 6 1153 219 133 0 0 chr9 74553337 74553382 -49522790 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 6 1153 285 319 71 41 chr9 74553400 74553596 -49522576 - LTR16C LTR ERVL -9 480 279 6 1153 320 317 60 12 chr9 74553611 74553777 -49522395 - LTR16C LTR ERVL -310 179 6 6 1153 710 119 8 0 chr9 74554977 74555111 -49521061 + (TG)n Simple_repeat Simple_repeat 1 135 0 6 1153 673 309 28 65 chr9 74555903 74556256 -49519916 + Lx8 LINE L1 5715 6054 -1419 6 1153 429 232 9 2 chr9 74556333 74556443 -49519729 + RSINE1 SINE B4 1 113 -179 6 1153 592 206 0 144 chr9 74556609 74556790 -49519382 + Lx7 LINE L1 7277 7431 -265 6 1153 678 121 22 28 chr9 74557483 74557557 -49518615 + polypurine Low_complexity Low_complexity 1 75 0 7 1153 1278 55 0 16 chr9 74557557 74557740 -49518432 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1153 678 121 22 28 chr9 74557740 74557821 -49518351 + polypurine Low_complexity Low_complexity 76 155 0 7 1153 1299 50 0 16 chr9 74557821 74558004 -49518168 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1153 678 121 22 28 chr9 74558004 74558025 -49518147 + polypurine Low_complexity Low_complexity 156 176 0 7 1153 208 223 29 19 chr9 74558025 74558130 -49518042 + GA-rich Low_complexity Low_complexity 3 108 0 7 1153 992 176 4 4 chr9 74558585 74558858 -49517314 + GA-rich Low_complexity Low_complexity 1 273 0 7 1153 261 0 0 0 chr9 74558858 74558887 -49517285 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 7 1153 259 306 25 34 chr9 74560420 74560559 -49515613 + MIR SINE MIR 35 174 -94 7 1153 1662 236 29 49 chr9 74561097 74561458 -49514714 - MTD LTR MaLR 0 419 72 7 1153 2545 60 6 6 chr9 74561458 74561794 -49514378 - L1Md_F2 LINE L1 -1 6581 6246 8 1153 1662 236 29 49 chr9 74561794 74561841 -49514331 - MTD LTR MaLR -348 71 19 7 1153 655 12 24 0 chr9 74561841 74561925 -49514247 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 8 1153 31 0 0 0 chr9 74561968 74561999 -49514173 + AT_rich Low_complexity Low_complexity 1 31 0 8 1153 322 270 0 55 chr9 74562821 74562966 -49513206 - Lx8 LINE L1 -5 7468 7332 8 1153 383 69 35 0 chr9 74563086 74563144 -49513028 + (GGGA)n Simple_repeat Simple_repeat 4 63 0 8 1153 1090 111 0 22 chr9 74563149 74563333 -49512839 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 8 1153 663 13 0 0 chr9 74563335 74563411 -49512761 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 8 1153 235 196 89 0 chr9 74563432 74563488 -49512684 - Lx8 LINE L1 -257 7216 7156 8 1153 477 0 0 0 chr9 74564850 74564903 -49511269 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1153 278 269 0 0 chr9 74564904 74565020 -49511152 + (TG)n Simple_repeat Simple_repeat 1 116 0 8 1153 867 82 0 0 chr9 74565032 74565166 -49511006 + (TG)n Simple_repeat Simple_repeat 1 134 0 8 1153 342 176 0 0 chr9 74565201 74565286 -49510886 + (TG)n Simple_repeat Simple_repeat 2 86 0 8 1153 274 224 29 15 chr9 74565689 74565757 -49510415 + L2a LINE L2 3352 3420 -6 8 1153 593 349 47 29 chr9 74566088 74566469 -49509703 - MLT1D LTR MaLR 0 505 118 8 1153 1181 281 117 26 chr9 74566476 74566904 -49509268 + Lx8 LINE L1 7007 7473 0 9 1153 863 83 0 0 chr9 74566956 74567077 -49509095 + B1_Mus1 SINE Alu 28 148 0 9 1153 317 324 87 22 chr9 74567478 74567661 -49508511 + Lx8 LINE L1 6904 7098 -375 9 1153 400 261 134 60 chr9 74567685 74567901 -49508271 + Lx8 LINE L1 7235 7466 -7 9 1153 714 199 20 0 chr9 74569461 74569607 -49506565 + Lx4B LINE L1 6907 7055 -3 9 1153 1017 306 102 29 chr9 74569899 74570381 -49505791 - L1MB7 LINE L1 -70 6114 5598 9 1153 789 245 34 73 chr9 74570472 74570705 -49505467 + B4 SINE B4 3 226 -66 9 1153 229 328 49 0 chr9 74570836 74570897 -49505275 + B4 SINE B4 215 278 -14 9 1153 216 0 0 0 chr9 74570941 74570965 -49505207 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1153 722 328 92 17 chr9 74572489 74572911 -49503261 + Lx8 LINE L1 6958 7411 -62 9 1153 381 198 0 47 chr9 74572946 74573021 -49503151 + B1_Mur3 SINE Alu 66 137 -12 9 1153 859 63 0 47 chr9 74573021 74573170 -49503002 + (AGGGGG)n Simple_repeat Simple_repeat 2 143 0 9 1153 282 42 0 0 chr9 74573556 74573604 -49502568 - MusHAL1 LINE L1 0 2712 2665 1 1153 1489 140 0 0 chr9 74573606 74573828 -49502344 + L1VL4 LINE L1 1 222 -6080 1 1153 586 145 0 0 chr9 74573832 74573915 -49502257 - L1VL4 LINE L1 -6032 270 188 1 1153 3936 114 39 1 chr9 74574202 74574828 -49501344 + Lx4A LINE L1 5565 6188 -870 1 1153 2133 166 80 8 chr9 74574800 74575189 -49500983 + Lx4A LINE L1 6641 7057 -1 1 1153 251 28 28 0 chr9 74575607 74575643 -49500529 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1153 1667 166 138 0 chr9 74575740 74576065 -49500107 + ORR1D2 LTR MaLR 1 370 0 1 1153 1307 249 88 16 chr9 74576495 74576849 -49499323 - MTE2b LTR MaLR -2 368 1 1 1153 23 0 0 0 chr9 74576869 74576892 -49499280 + AT_rich Low_complexity Low_complexity 1 23 0 1 1153 243 0 0 0 chr9 74576932 74576959 -49499213 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1153 1145 261 30 0 chr9 74577707 74577975 -49498197 + MTD LTR MaLR 1 276 -143 1 1153 2128 112 18 59 chr9 74578000 74578340 -49497832 + ORR1A3 LTR MaLR 1 326 0 1 1153 1037 245 135 21 chr9 74578549 74578815 -49497357 - MTD LTR MaLR -14 405 101 1 1153 378 0 0 0 chr9 74578815 74578857 -49497315 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1153 1037 245 135 21 chr9 74578857 74578923 -49497249 - MTD LTR MaLR -319 100 36 1 1153 1002 162 173 0 chr9 74578926 74579117 -49497055 + URR1B DNA MER1_type 2 225 0 1 1154 9347 18 2 1 chr9 74580942 74582679 -49493493 - L1Md_A LINE L1 0 6582 4843 1 1154 3850 185 36 6 chr9 74582674 74583382 -49492790 - RMER1B Other Other -15 1051 4 1 1154 1371 218 143 6 chr9 74584178 74584534 -49491638 + MTD LTR MaLR 1 405 -14 1 1154 239 204 20 0 chr9 74584623 74584672 -49491500 - B4A SINE B4 -242 50 1 1 1154 22 0 0 0 chr9 74585408 74585430 -49490742 + GC_rich Low_complexity Low_complexity 1 22 0 1 1154 332 234 0 11 chr9 74586723 74586818 -49489354 + (ATGGTG)n Simple_repeat Simple_repeat 4 97 0 1 1154 182 143 31 31 chr9 74586821 74586886 -49489286 + GA-rich Low_complexity Low_complexity 3 67 0 1 1154 340 302 217 20 chr9 74587461 74587613 -49488559 - MER5A DNA MER1_type 0 189 8 1 1154 436 266 6 11 chr9 74588065 74588240 -49487932 + (CATATA)n Simple_repeat Simple_repeat 3 176 0 1 1154 481 331 0 27 chr9 74588257 74588511 -49487661 + (CATA)n Simple_repeat Simple_repeat 1 247 0 1 1154 536 194 8 0 chr9 74590098 74590227 -49485945 + (CA)n Simple_repeat Simple_repeat 1 130 0 1 1154 528 262 113 16 chr9 74590521 74590715 -49485457 - B3 SINE B2 0 216 4 1 1154 1440 228 49 30 chr9 74590840 74591207 -49484965 + MTE2b LTR MaLR 6 379 0 1 1154 680 264 42 19 chr9 74591345 74591561 -49484611 + B4 SINE B4 1 221 -71 1 1154 1028 291 106 11 chr9 74591611 74592170 -49484002 + L1MB1 LINE L1 4248 4859 -1281 1 1154 736 264 34 0 chr9 74592235 74592413 -49483759 + B3A SINE B2 2 185 -13 1 1154 432 170 9 57 chr9 74592427 74592533 -49483639 + L1MB1 LINE L1 4974 5074 -1066 1 1154 285 29 0 0 chr9 74592538 74592572 -49483600 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1154 227 265 235 13 chr9 74592584 74592737 -49483435 + L1MB1 LINE L1 5160 5346 -794 1 1154 546 306 28 34 chr9 74592801 74593074 -49483098 + L1MB1 LINE L1 5440 5723 -466 1 1154 841 254 48 131 chr9 74593098 74593379 -49482793 - MTE2a LTR MaLR -14 365 93 1 1154 1301 65 48 0 chr9 74593379 74593547 -49482625 + B2_Mm2 SINE B2 1 176 -19 1 1154 841 254 48 131 chr9 74593547 74593663 -49482509 - MTE2a LTR MaLR -287 92 1 1 1154 938 296 52 20 chr9 74593663 74594011 -49482161 + L1MB1 LINE L1 5728 6086 -103 1 1154 612 0 0 0 chr9 74594147 74594215 -49481957 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1154 358 282 42 14 chr9 74594483 74594627 -49481545 + B1F1 SINE Alu 1 148 -1 1 1154 391 204 18 71 chr9 74594645 74594758 -49481414 + ID4 SINE ID 12 118 -34 1 1154 234 0 0 0 chr9 74596559 74596585 -49479587 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1154 455 170 0 35 chr9 74597225 74597458 -49478714 + (TG)n Simple_repeat Simple_repeat 1 224 0 1 1154 683 261 19 89 chr9 74597466 74597553 -49478619 - B4 SINE B4 0 292 217 1 1154 537 16 0 0 chr9 74597553 74597615 -49478557 + (CTTG)n Simple_repeat Simple_repeat 2 63 0 1 1154 683 261 42 92 chr9 74597615 74597815 -49478357 - B4 SINE B4 -6 218 6 1 1154 247 244 23 58 chr9 74598910 74598997 -49477175 - MLT1A LTR MaLR -212 162 79 1 1154 299 181 14 0 chr9 74599262 74599334 -49476838 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1154 477 259 0 9 chr9 74599929 74600042 -49476130 - B4 SINE B4 -57 235 124 1 1154 7501 174 28 20 chr9 74600043 74600915 -49475257 - Lx5 LINE L1 -107 6943 6088 1 1154 1129 82 7 0 chr9 74600915 74601062 -49475110 - B1_Mus1 SINE Alu 0 148 1 1 1154 10719 141 42 35 chr9 74601062 74602238 -49473934 - Lx5 LINE L1 -963 6087 4868 1 1154 204 40 0 0 chr9 74602238 74602263 -49473909 + (TTATA)n Simple_repeat Simple_repeat 1 25 0 1 1154 10719 134 44 38 chr9 74602263 74603206 -49472966 - Lx5 LINE L1 -1010 4867 3935 1 1154 261 174 22 0 chr9 74603216 74603262 -49472910 - Lx5 LINE L1 -1907 3970 3924 1 1154 1349 143 4 9 chr9 74603262 74603487 -49472685 - Lx5 LINE L1 -3098 2779 2556 1 1154 1288 175 35 12 chr9 74603487 74603926 -49472246 - Lx5 LINE L1 -4489 1388 882 1 1154 1520 68 16 0 chr9 74604129 74604320 -49471852 + B2_Mm2 SINE B2 1 194 -1 1 1154 4499 45 2 0 chr9 74604320 74604857 -49471315 + L1Md_F2 LINE L1 6045 6582 0 1 1154 248 260 65 107 chr9 74605600 74605788 -49470384 - MIR SINE MIR -58 204 38 1 1154 234 338 65 36 chr9 74605868 74606006 -49470166 + MIRb SINE MIR 111 252 -10 1 1154 357 297 0 0 chr9 74606141 74606232 -49469940 + B3A SINE B2 60 150 -48 1 1154 312 120 0 0 chr9 74606235 74606285 -49469887 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1154 448 202 43 0 chr9 74606422 74606516 -49469656 - PB1D7 SINE Alu -21 99 2 1 1154 476 319 137 4 chr9 74606946 74607195 -49468977 - B4A SINE B4 -10 282 1 1 1154 2878 38 0 118 chr9 74607722 74608136 -49468036 + RLTR10B2 LTR ERVK 1 365 0 1 1154 617 155 8 17 chr9 74608416 74608534 -49467638 + MTEa LTR MaLR 262 378 -1 1 1154 483 262 99 142 chr9 74609239 74609613 -49466559 - ORR1E LTR MaLR 0 359 2 1 1154 276 130 0 0 chr9 74609642 74609688 -49466484 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1154 701 200 35 21 chr9 74609692 74609835 -49466337 - B1_Mur4 SINE Alu -5 145 1 1 1154 314 289 14 0 chr9 74609892 74609986 -49466186 - PB1D10 SINE Alu -9 108 14 1 1154 658 260 45 6 chr9 74610184 74610362 -49465810 + ID_B1 SINE B4 31 215 -9 1 1154 388 131 0 0 chr9 74610807 74610868 -49465304 + B2_Mm2 SINE B2 3 63 -132 1 1154 329 127 0 0 chr9 74610955 74611010 -49465162 + B2_Mm2 SINE B2 47 101 -94 1 1154 1726 124 107 7 chr9 74611761 74612060 -49464112 + ORR1A4 LTR MaLR 1 329 0 1 1154 362 285 20 62 chr9 74612153 74612299 -49463873 - B1F2 SINE Alu 0 149 10 1 1154 471 18 0 0 chr9 74612306 74612362 -49463810 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 1 1154 22 103 0 0 chr9 74613123 74613201 -49462971 + AT_rich Low_complexity Low_complexity 1 78 0 1 1154 214 219 25 99 chr9 74613621 74613702 -49462470 + B4 SINE B4 6 80 -212 1 1154 1102 103 7 0 chr9 74614245 74614391 -49461781 + B1_Mus1 SINE Alu 2 148 0 1 1154 459 0 0 0 chr9 74614506 74614557 -49461615 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 1154 246 247 13 64 chr9 74614619 74614697 -49461475 + ID4 SINE ID 8 81 -2 1 1154 220 281 18 0 chr9 74614703 74614760 -49461412 + GA-rich Low_complexity Low_complexity 5 62 0 1 1154 331 236 127 40 chr9 74614762 74614912 -49461260 + RSINE1 SINE B4 3 165 0 1 1154 204 97 0 0 chr9 74614962 74614993 -49461179 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 1154 384 22 0 0 chr9 74615253 74615298 -49460874 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1154 342 0 0 0 chr9 74615298 74615335 -49460837 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1154 752 236 34 17 chr9 74615435 74615612 -49460560 + B3A SINE B2 3 182 -16 1 1154 50 31 0 0 chr9 74615617 74615681 -49460491 + AT_rich Low_complexity Low_complexity 1 64 0 1 1154 745 164 62 0 chr9 74615681 74615809 -49460363 + B1_Mus2 SINE Alu 1 136 -11 1 1154 1265 83 0 6 chr9 74615809 74615990 -49460182 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1154 822 94 0 0 chr9 74615992 74616109 -49460063 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 1 1154 291 189 151 0 chr9 74616124 74616217 -49459955 + L1MCc LINE L1 1380 1487 -4935 1 1154 280 247 113 0 chr9 74616287 74616384 -49459788 + B1F SINE Alu 42 149 0 1 1154 36345 42 0 3 chr9 74616388 74621558 -49454614 + L1Md_T LINE L1 338 5589 -297 1 1154 8630 29 2 0 chr9 74621558 74622552 -49453620 + L1Md_T LINE L1 5590 6585 0 1 1154 260 27 27 0 chr9 74622577 74622614 -49453558 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1154 1022 272 55 30 chr9 74622928 74623258 -49452914 - ORR1E LTR MaLR -21 338 1 1 1154 229 246 35 0 chr9 74623258 74623315 -49452857 - L1MC LINE L1 -690 5654 5596 1 1154 365 299 145 26 chr9 74624893 74625120 -49451052 + MER2 DNA MER2_type 88 341 -4 1 1154 390 282 36 0 chr9 74625133 74625243 -49450929 + Tigger5 DNA MER2_type 2291 2404 -2 1 1154 22 0 0 0 chr9 74625383 74625405 -49450767 + AT_rich Low_complexity Low_complexity 1 22 0 1 1154 467 252 54 42 chr9 74625407 74625573 -49450599 + Lx8 LINE L1 7268 7435 -38 1 1154 270 0 0 0 chr9 74625574 74625604 -49450568 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1154 227 265 109 30 chr9 74625900 74626001 -49450171 - L1ME3B LINE L1 -115 6125 6017 1 1154 483 314 14 0 chr9 74626304 74626444 -49449728 + B4A SINE B4 143 284 -8 1 1154 432 0 0 0 chr9 74626478 74626526 -49449646 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1154 348 83 0 0 chr9 74627712 74627760 -49448412 + (TTG)n Simple_repeat Simple_repeat 3 50 0 1 1154 462 241 68 0 chr9 74627845 74627978 -49448194 - B1F1 SINE Alu -2 147 6 1 1154 460 265 152 40 chr9 74628008 74628185 -49447987 - B3A SINE B2 -1 197 1 1 1154 207 337 129 27 chr9 74628625 74628811 -49447361 - MIRb SINE MIR -11 257 53 1 1154 1169 197 0 0 chr9 74628900 74629113 -49447059 + B3 SINE B2 4 216 0 1 1154 324 190 0 0 chr9 74629800 74629879 -49446293 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1154 228 286 0 0 chr9 74630125 74630174 -49445998 + RMER1B Other Other 7 55 -1011 2 1154 704 145 187 42 chr9 74630176 74630227 -49445945 + RMER1A Other Other 828 885 -145 2 1154 246 105 0 0 chr9 74630227 74630265 -49445907 + (TGG)n Simple_repeat Simple_repeat 3 40 0 2 1154 405 54 0 0 chr9 74630268 74630324 -49445848 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1154 704 145 187 42 chr9 74630324 74630434 -49445738 + RMER1A Other Other 886 1012 -18 2 1154 453 265 14 11 chr9 74630473 74630609 -49445563 - L1M3 LINE L1 -2585 3555 3406 2 1154 481 260 22 28 chr9 74630615 74630797 -49445375 - L1M2 LINE L1 -1444 4699 4519 2 1154 332 323 67 83 chr9 74630887 74631140 -49445032 - B4 SINE B4 -42 250 2 2 1154 210 353 56 56 chr9 74631146 74631266 -49444906 - L2 LINE L2 -950 2469 2358 2 1154 2015 82 0 7 chr9 74631266 74631536 -49444636 + L1_Mus1 LINE L1 6300 6567 0 2 1154 210 353 56 56 chr9 74631536 74631628 -49444544 - L2 LINE L2 -1062 2357 2257 2 1154 579 264 36 0 chr9 74631739 74631879 -49444293 + B1_Mur1 SINE Alu 5 149 0 2 1154 239 241 45 112 chr9 74632001 74632090 -49444082 + B3 SINE B2 99 183 -15 2 1154 297 0 0 0 chr9 74632100 74632133 -49444039 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1154 23 0 0 0 chr9 74632133 74632156 -49444016 + AT_rich Low_complexity Low_complexity 1 23 0 2 1154 1568 255 46 16 chr9 74633013 74633384 -49442788 + Lx6 LINE L1 7053 7434 -26 2 1154 413 293 14 21 chr9 74633445 74633588 -49442584 - MER117 DNA MER1_type -14 183 42 2 1154 2062 143 25 6 chr9 74634019 74634342 -49441830 - ORR1A4 LTR MaLR 0 329 1 2 1154 809 202 40 65 chr9 74634621 74634822 -49441350 + B3A SINE B2 3 198 0 2 1154 448 250 60 8 chr9 74635360 74635493 -49440679 + Lx8 LINE L1 7190 7329 -144 2 1154 1471 213 20 7 chr9 74635493 74635796 -49440376 + MTD LTR MaLR 3 309 -110 2 1154 487 203 68 0 chr9 74636051 74636169 -49440003 + MTD LTR MaLR 294 419 0 2 1154 285 195 347 8 chr9 74636384 74636508 -49439664 - B4 SINE B4 -72 220 55 2 1154 3701 75 2 2 chr9 74636632 74637111 -49439061 - L1_Mus1 LINE L1 -2 6565 6087 2 1154 392 204 91 48 chr9 74637206 74637380 -49438792 + B3A SINE B2 1 187 -8 2 1154 22 35 0 0 chr9 74638037 74638066 -49438106 + AT_rich Low_complexity Low_complexity 1 29 0 2 1154 1074 231 49 25 chr9 74638320 74638604 -49437568 + B4A SINE B4 2 292 0 2 1154 496 304 133 26 chr9 74639305 74639538 -49436634 + B4A SINE B4 35 292 0 2 1154 360 0 0 0 chr9 74639592 74639632 -49436540 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1154 623 295 0 7 chr9 74639633 74639783 -49436389 - RSINE1 SINE B4 -14 151 3 2 1154 22 56 0 0 chr9 74639783 74639819 -49436353 + AT_rich Low_complexity Low_complexity 1 36 0 2 1154 180 0 0 0 chr9 74640337 74640357 -49435815 + (TGG)n Simple_repeat Simple_repeat 3 22 0 2 1154 588 121 0 0 chr9 74640357 74640448 -49435724 + (TTC)n Simple_repeat Simple_repeat 2 92 0 2 1154 400 226 35 56 chr9 74641424 74641585 -49434587 + B4A SINE B4 5 292 0 2 1154 226 197 32 32 chr9 74642579 74642642 -49433530 + GA-rich Low_complexity Low_complexity 4 66 0 2 1154 774 266 0 0 chr9 74642727 74642904 -49433268 + B4A SINE B4 109 285 -7 2 1154 437 226 182 75 chr9 74643003 74643151 -49433021 + B3 SINE B2 5 174 -42 2 1154 2370 138 104 5 chr9 74643151 74643573 -49432599 + RMER4A LTR ERVK 1 464 -2 2 1154 437 226 182 75 chr9 74643573 74643611 -49432561 + B3 SINE B2 175 211 -5 2 1154 375 255 68 34 chr9 74644388 74644534 -49431638 - MIRb SINE MIR -7 261 111 2 1154 1168 222 96 36 chr9 74644622 74644797 -49431375 + MTEb LTR MaLR 3 196 -183 2 1154 627 26 0 0 chr9 74644797 74644874 -49431298 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1154 1168 222 96 36 chr9 74644874 74645054 -49431118 + MTEb LTR MaLR 197 378 -1 2 1154 399 373 24 0 chr9 74645650 74645819 -49430353 - MER96 DNA hAT 0 175 3 2 1154 729 163 0 31 chr9 74646749 74646876 -49429296 + B1_Mus1 SINE Alu 20 142 -6 2 1154 670 283 47 42 chr9 74647687 74647901 -49428271 + ID_B1 SINE B4 8 222 -2 2 1154 783 307 75 0 chr9 74648463 74648717 -49427455 + Lx8 LINE L1 6961 7233 -240 2 1154 254 337 34 0 chr9 74648717 74648806 -49427366 + RMER15 LTR ERVL 371 462 -113 2 1154 2490 213 104 133 chr9 74650127 74650962 -49425210 + RMER1B Other Other 7 817 -249 2 1154 816 204 37 26 chr9 74651373 74651564 -49424608 + B3A SINE B2 6 198 0 2 1154 262 288 0 0 chr9 74651962 74652021 -49424151 - B4 SINE B4 -13 279 221 2 1154 237 33 0 0 chr9 74652025 74652055 -49424117 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 1154 1926 143 103 6 chr9 74652059 74652410 -49423762 - ORR1B1 LTR MaLR -9 385 1 2 1154 219 167 0 0 chr9 74652436 74652478 -49423694 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2 1154 717 224 89 42 chr9 74652478 74652692 -49423480 - B4 SINE B4 -67 225 2 2 1154 216 191 62 16 chr9 74652877 74652941 -49423231 + MIRm SINE MIR 195 261 -15 2 1154 258 272 54 11 chr9 74653328 74653421 -49422751 - Kanga2_a DNA Tc2 -45 843 747 2 1154 475 256 8 17 chr9 74653440 74653559 -49422613 + PB1D9 SINE Alu 3 120 0 2 1154 186 43 0 0 chr9 74653683 74653706 -49422466 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1154 2775 138 5 12 chr9 74653840 74654264 -49421908 - MTC LTR MaLR 0 421 1 2 1154 198 0 0 0 chr9 74654339 74654361 -49421811 + (TTTTA)n Simple_repeat Simple_repeat 5 26 0 2 1154 447 68 0 0 chr9 74654383 74654442 -49421730 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1154 474 267 25 25 chr9 74654446 74654565 -49421607 - RSINE1 SINE B4 -43 122 4 2 1154 213 210 129 0 chr9 74654580 74654642 -49421530 + L2a LINE L2 3304 3373 -53 2 1154 324 277 19 19 chr9 74654675 74654778 -49421394 + MER58A DNA MER1_type 52 154 -70 2 1154 2512 182 80 4 chr9 74654786 74655231 -49420941 + RLTR20B3 LTR ERVK 1 483 -94 2 1154 423 0 0 0 chr9 74655231 74655278 -49420894 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1154 2512 182 80 4 chr9 74655278 74655368 -49420804 + RLTR20B3 LTR ERVK 484 576 -1 2 1154 465 19 0 0 chr9 74656347 74656401 -49419771 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1154 2769 79 24 3 chr9 74656543 74656924 -49419248 - Lx3_Mus LINE L1 0 7009 6621 2 1154 548 203 7 47 chr9 74656979 74657244 -49418928 + GA-rich Low_complexity Low_complexity 1 254 0 2 1154 658 240 13 13 chr9 74657816 74657968 -49418204 - B3A SINE B2 -46 152 1 2 1154 276 30 0 0 chr9 74658130 74658163 -49418009 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 2 1154 261 70 35 17 chr9 74659827 74659885 -49416287 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1154 1004 101 6 0 chr9 74660694 74660872 -49415300 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1154 705 118 35 0 chr9 74660872 74661042 -49415130 + (TCTG)n Simple_repeat Simple_repeat 4 179 0 2 1154 870 292 13 56 chr9 74661049 74661354 -49414818 - B4A SINE B4 0 292 1 2 1154 671 189 146 12 chr9 74661748 74661919 -49414253 + B3A SINE B2 5 198 0 2 1154 836 203 141 0 chr9 74662399 74662576 -49413596 - B3 SINE B2 -12 204 3 2 1154 180 0 0 0 chr9 74663342 74663362 -49412810 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1154 1194 61 7 0 chr9 74663407 74663554 -49412618 - B1_Mus1 SINE Alu 0 148 1 2 1154 500 333 31 34 chr9 74663688 74663980 -49412192 + B4A SINE B4 2 292 0 2 1154 835 134 32 13 chr9 74663980 74664288 -49411884 + (TAGA)n Simple_repeat Simple_repeat 1 313 0 2 1154 1377 52 0 0 chr9 74664307 74664481 -49411691 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 2 1154 253 330 0 11 chr9 74664489 74664581 -49411591 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1154 738 199 51 1 chr9 74666110 74666267 -49409905 + B3A SINE B2 3 166 -32 2 1154 477 0 0 0 chr9 74666267 74666320 -49409852 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1154 225 0 0 0 chr9 74666320 74666344 -49409828 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1154 225 0 0 0 chr9 74666344 74666368 -49409804 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1154 462 229 61 91 chr9 74666368 74666405 -49409767 + B2_Mm2 SINE B2 160 191 -4 2 1154 743 144 8 8 chr9 74666406 74666532 -49409640 + B1_Mur2 SINE Alu 24 149 0 2 1154 902 142 0 0 chr9 74666556 74666690 -49409482 + B1_Mus1 SINE Alu 1 134 -14 2 1154 30 45 0 0 chr9 74666705 74666749 -49409423 + AT_rich Low_complexity Low_complexity 1 44 0 2 1154 807 214 124 9 chr9 74667134 74667360 -49408812 + B4 SINE B4 3 254 -38 2 1154 378 0 0 0 chr9 74667389 74667431 -49408741 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1154 1206 80 119 6 chr9 74668680 74668857 -49407315 + Lx4A LINE L1 6652 6848 -210 2 1154 442 187 84 0 chr9 74668850 74668957 -49407215 + Lx4A LINE L1 6942 7057 -1 2 1154 252 86 0 0 chr9 74668958 74668993 -49407179 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1154 198 294 41 68 chr9 74670306 74670379 -49405793 + L2b LINE L2 3284 3354 -21 2 1154 247 300 175 0 chr9 74670662 74670782 -49405390 - MIR3 SINE MIR -36 172 32 2 1154 1145 196 110 7 chr9 74671164 74671446 -49404726 + Lx9 LINE L1 7324 7634 -10 2 1154 26 0 0 0 chr9 74671468 74671494 -49404678 + AT_rich Low_complexity Low_complexity 1 26 0 2 1154 608 266 40 40 chr9 74671781 74671981 -49404191 - B3 SINE B2 0 216 17 2 1154 841 269 40 14 chr9 74672098 74672320 -49403852 + B4A SINE B4 1 228 -64 2 1154 354 279 55 55 chr9 74672354 74672464 -49403708 + B4 SINE B4 183 292 0 2 1154 248 262 71 39 chr9 74673185 74673312 -49402860 - Lx5 LINE L1 -1160 5890 5724 2 1154 410 210 280 0 chr9 74673328 74673428 -49402744 - B1_Mur1 SINE Alu -8 141 14 2 1154 213 278 0 0 chr9 74675020 74675074 -49401098 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1154 219 69 0 0 chr9 74676089 74676118 -49400054 + (CTTTG)n Simple_repeat Simple_repeat 1 29 0 2 1154 1393 216 56 0 chr9 74676199 74676504 -49399668 + ORR1D2 LTR MaLR 49 370 0 3 1154 540 274 129 0 chr9 74677666 74677852 -49398320 + ID_B1 SINE B4 5 214 -10 3 1154 357 300 220 37 chr9 74678214 74678487 -49397685 + L1ME4a LINE L1 5533 5855 -269 3 1154 349 249 96 20 chr9 74678553 74678704 -49397468 + L1ME3B LINE L1 5383 5539 -625 3 1154 393 348 70 13 chr9 74678837 74678994 -49397178 + L1ME3B LINE L1 5744 5909 -331 3 1154 381 43 0 0 chr9 74679338 74679385 -49396787 + (TTTTA)n Simple_repeat Simple_repeat 4 50 0 3 1154 396 171 85 7 chr9 74679484 74679625 -49396547 - Lx9 LINE L1 -1 7643 7492 3 1154 731 207 7 13 chr9 74679651 74679803 -49396369 - Lx9 LINE L1 -285 7359 7209 3 1154 1233 130 17 73 chr9 74680197 74680429 -49395743 - URR1B DNA MER1_type 0 225 7 3 1154 1996 182 43 3 chr9 74680465 74680812 -49395360 + RLTR30 LTR ERV1 6 366 -13 3 1154 505 333 49 19 chr9 74680822 74680984 -49395188 - B4A SINE B4 -109 183 17 3 1154 693 258 0 0 chr9 74680999 74681131 -49395041 + RSINE1 SINE B4 3 134 -31 3 1154 309 306 106 34 chr9 74681131 74681178 -49394994 + B2_Mm2 SINE B2 2 193 -2 3 1154 1342 81 16 26 chr9 74681188 74681379 -49394793 + B2_Mm2 SINE B2 2 190 -5 3 1154 275 146 0 0 chr9 74681766 74681807 -49394365 + B3A SINE B2 22 62 -136 3 1154 513 47 0 0 chr9 74681914 74681978 -49394194 + (CAGA)n Simple_repeat Simple_repeat 2 65 0 3 1154 523 203 67 24 chr9 74682191 74682358 -49393814 + B3 SINE B2 23 187 -8 3 1154 202 312 0 61 chr9 74682470 74682552 -49393620 - L2c LINE L2 0 3387 3311 3 1154 686 255 35 0 chr9 74683642 74683787 -49392385 - MTE2b LTR MaLR 0 379 230 3 1154 279 261 10 80 chr9 74683816 74683916 -49392256 - MTE2b LTR MaLR -141 238 146 3 1154 734 164 40 60 chr9 74683981 74684130 -49392042 + B1_Mur4 SINE Alu 5 150 0 3 1154 264 30 0 0 chr9 74684133 74684166 -49392006 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1154 8745 26 0 1 chr9 74684268 74685264 -49390908 + L1Md_T LINE L1 5587 6581 -1 3 1154 24 0 0 0 chr9 74685264 74685288 -49390884 + AT_rich Low_complexity Low_complexity 1 24 0 3 1154 586 213 89 30 chr9 74685307 74685476 -49390696 + L1MD LINE L1 4442 4620 -1526 3 1154 717 61 0 0 chr9 74685501 74685600 -49390572 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 1154 255 219 57 21 chr9 74685623 74685763 -49390409 + (TG)n Simple_repeat Simple_repeat 1 145 0 3 1154 656 268 0 39 chr9 74685855 74686034 -49390138 - B4A SINE B4 -120 172 1 3 1154 224 256 112 67 chr9 74686615 74686749 -49389423 + L2 LINE L2 2680 2819 -600 3 1154 596 238 25 0 chr9 74686750 74686872 -49389300 + RSINE1 SINE B4 3 127 -38 3 1154 216 220 40 0 chr9 74686884 74686934 -49389238 + C-rich Low_complexity Low_complexity 4 55 0 3 1154 342 45 0 0 chr9 74686941 74686985 -49389187 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1154 785 233 71 25 chr9 74686986 74687184 -49388988 - ID_B1 SINE B4 -17 207 1 3 1154 454 268 260 7 chr9 74687994 74688148 -49388024 - ID_B1 SINE B4 -12 212 20 3 1154 314 45 0 22 chr9 74688226 74688271 -49387901 + (GGA)n Simple_repeat Simple_repeat 3 46 0 3 1154 207 100 0 0 chr9 74688325 74688355 -49387817 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3 1154 225 310 60 0 chr9 74689481 74689581 -49386591 - MER20B DNA MER1_type -159 624 519 3 1154 238 341 108 42 chr9 74689694 74689908 -49386264 + Lx8 LINE L1 7193 7420 -53 3 1154 1480 242 46 6 chr9 74690093 74690421 -49385751 - MTE2b LTR MaLR -38 341 1 3 1154 470 180 45 0 chr9 74690687 74690776 -49385396 + B1_Mur1 SINE Alu 45 137 -12 3 1154 914 243 43 24 chr9 74690799 74691010 -49385162 + B3 SINE B2 1 215 -1 3 1154 632 284 45 20 chr9 74691087 74691288 -49384884 + ID_B1 SINE B4 5 210 -14 3 1154 696 232 87 11 chr9 74692190 74692373 -49383799 - B3A SINE B2 0 198 2 3 1154 197 296 125 14 chr9 74692378 74692450 -49383722 - MIRc SINE MIR -117 151 72 3 1154 636 236 65 50 chr9 74692592 74692793 -49383379 + B3 SINE B2 13 216 0 3 1154 22 35 0 0 chr9 74693142 74693171 -49383001 + AT_rich Low_complexity Low_complexity 1 29 0 3 1154 793 263 51 5 chr9 74693777 74693972 -49382200 - B3 SINE B2 -12 204 1 3 1154 575 234 153 28 chr9 74694005 74694181 -49381991 - B3A SINE B2 0 198 1 3 1154 251 114 0 22 chr9 74694387 74694432 -49381740 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1154 548 53 13 0 chr9 74695457 74695533 -49380639 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 3 1154 444 37 0 0 chr9 74695774 74695828 -49380344 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1154 627 14 0 0 chr9 74695828 74695900 -49380272 + (GGAA)n Simple_repeat Simple_repeat 4 75 0 3 1154 189 0 0 0 chr9 74696111 74696132 -49380040 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1154 180 0 0 0 chr9 74697451 74697471 -49378701 + (C)n Simple_repeat Simple_repeat 1 20 0 3 1154 207 0 0 0 chr9 74699742 74699765 -49376407 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1154 23 33 0 0 chr9 74700988 74701018 -49375154 + AT_rich Low_complexity Low_complexity 1 30 0 3 1154 304 311 0 68 chr9 74701314 74701490 -49374682 + GA-rich Low_complexity Low_complexity 2 165 0 3 1154 453 19 0 0 chr9 74704327 74704381 -49371791 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1154 635 94 10 0 chr9 74704383 74704479 -49371693 + (GA)n Simple_repeat Simple_repeat 1 97 0 3 1154 180 214 0 0 chr9 74707257 74707313 -49368859 + GA-rich Low_complexity Low_complexity 2 57 0 3 1154 486 0 0 0 chr9 74707629 74707683 -49368489 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 3 1154 294 106 0 0 chr9 74710472 74710519 -49365653 + (CCA)n Simple_repeat Simple_repeat 1 47 0 3 1155 360 0 0 0 chr9 74712274 74712314 -49363858 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1155 479 60 15 0 chr9 74713482 74713549 -49362623 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 3 1155 378 0 0 0 chr9 74715157 74715199 -49360973 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1155 201 74 0 0 chr9 74716883 74716910 -49359262 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1155 234 0 0 0 chr9 74717620 74717646 -49358526 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 3 1155 266 338 188 0 chr9 74717804 74717937 -49358235 - MER5B DNA MER1_type 0 178 21 3 1155 242 368 48 18 chr9 74718147 74718313 -49357859 - MER65D LTR ERV1 -240 233 63 3 1155 378 0 0 0 chr9 74718561 74718603 -49357569 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1155 315 164 31 47 chr9 74718614 74718678 -49357494 + HAL1-3A_ME LINE L1 1976 2038 -820 3 1155 1003 169 100 5 chr9 74719554 74719744 -49356428 - ID_B1 SINE B4 -15 209 2 3 1155 405 0 0 0 chr9 74720145 74720190 -49355982 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1155 343 242 131 0 chr9 74720642 74720741 -49355431 + MIR3 SINE MIR 88 199 -9 3 1155 646 118 21 6 chr9 74721298 74721407 -49354765 + B1_Mur4 SINE Alu 2 108 -12 3 1155 550 242 4 24 chr9 74721400 74721534 -49354638 - ID_B1 SINE B4 -38 186 58 3 1155 213 152 21 21 chr9 74721736 74721783 -49354389 + PB1D7 SINE Alu 11 57 -63 3 1155 264 91 0 0 chr9 74722045 74722089 -49354083 + (CAG)n Simple_repeat Simple_repeat 1 44 0 3 1155 269 308 11 42 chr9 74722097 74722192 -49353980 + MER5A1 DNA MER1_type 74 165 -1 3 1155 513 0 0 0 chr9 74722493 74722550 -49353622 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1155 321 67 60 19 chr9 74723011 74723064 -49353108 - MTC LTR MaLR -2 419 321 3 1155 240 203 333 0 chr9 74723064 74723133 -49353039 + PB1D9 SINE Alu 1 92 -28 3 1155 1032 235 204 12 chr9 74723160 74723488 -49352684 - MTD LTR MaLR -28 391 1 3 1155 459 0 0 0 chr9 74723894 74723945 -49352227 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1155 788 199 40 75 chr9 74724226 74724389 -49351783 + B3A SINE B2 1 165 -33 3 1155 198 0 0 0 chr9 74724389 74724411 -49351761 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1155 279 0 0 0 chr9 74724413 74724444 -49351728 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1155 788 199 40 75 chr9 74724444 74724478 -49351694 + B3A SINE B2 166 194 -4 3 1155 1430 75 11 5 chr9 74724485 74724674 -49351498 + B2_Mm2 SINE B2 1 190 -5 3 1155 24 32 0 0 chr9 74724674 74724705 -49351467 + AT_rich Low_complexity Low_complexity 1 31 0 3 1155 261 0 0 0 chr9 74724803 74724832 -49351340 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 3 1155 271 254 0 0 chr9 74724932 74724999 -49351173 - L1M5 LINE L1 -318 5806 5740 3 1155 592 267 163 67 chr9 74725355 74725785 -49350387 - Lx8 LINE L1 -2 7471 7001 3 1155 385 200 94 0 chr9 74725823 74725908 -49350264 + RSINE1 SINE B4 35 127 -38 3 1155 450 0 0 0 chr9 74725912 74725962 -49350210 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1155 261 219 62 0 chr9 74726291 74726355 -49349817 - L1MC4 LINE L1 -181 7861 7794 3 1155 369 243 15 146 chr9 74726579 74726709 -49349463 - RSINE1 SINE B4 0 165 53 3 1155 301 325 58 35 chr9 74726763 74727024 -49349148 - L1MC4 LINE L1 -532 7510 7244 3 1155 567 294 102 69 chr9 74727136 74727468 -49348704 - L1MC4 LINE L1 -1038 7004 6662 3 1155 193 183 16 16 chr9 74727545 74727606 -49348566 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 3 1155 477 286 0 0 chr9 74727606 74727711 -49348461 - RSINE1 SINE B4 -48 117 13 3 1155 252 0 0 0 chr9 74727711 74727739 -49348433 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1155 252 0 0 0 chr9 74727802 74727830 -49348342 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1155 510 229 0 0 chr9 74727932 74728173 -49347999 + (CA)n Simple_repeat Simple_repeat 1 241 0 3 1155 582 15 0 0 chr9 74728173 74728240 -49347932 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1155 510 222 0 0 chr9 74728240 74728256 -49347916 + (CA)n Simple_repeat Simple_repeat 2 17 0 3 1155 255 343 19 29 chr9 74728367 74728472 -49347700 + MER5A DNA MER1_type 83 186 -3 3 1155 503 243 84 0 chr9 74729428 74729535 -49346637 + ID_B1 SINE B4 109 224 0 4 1155 1155 170 14 45 chr9 74729869 74730091 -49346081 - B3 SINE B2 0 216 2 4 1155 728 262 127 13 chr9 74730883 74731119 -49345053 - B4A SINE B4 -29 263 1 4 1155 1387 72 11 11 chr9 74731381 74731565 -49344607 - B2_Mm1t SINE B2 -8 185 2 4 1155 419 212 39 29 chr9 74731837 74731939 -49344233 - PB1D10 SINE Alu -10 107 5 4 1155 23 0 0 0 chr9 74732364 74732387 -49343785 + AT_rich Low_complexity Low_complexity 1 23 0 4 1155 542 261 102 6 chr9 74732399 74732565 -49343607 - B3A SINE B2 -16 182 1 4 1155 421 266 119 119 chr9 74732901 74733119 -49343053 + ID_B1 SINE B4 5 222 -2 4 1155 765 228 5 88 chr9 74733845 74734061 -49342111 - B3A SINE B2 0 198 1 4 1155 229 300 49 16 chr9 74734737 74734798 -49341374 - B1F2 SINE Alu -86 63 1 4 1155 363 311 121 46 chr9 74736070 74736377 -49339795 + L2 LINE L2 2316 2645 -774 4 1155 769 240 5 68 chr9 74736599 74736791 -49339381 + B3A SINE B2 1 180 -18 4 1155 26 30 0 0 chr9 74737444 74737477 -49338695 + AT_rich Low_complexity Low_complexity 1 33 0 4 1155 225 0 0 0 chr9 74737816 74737841 -49338331 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1155 21 0 0 0 chr9 74739288 74739309 -49336863 + AT_rich Low_complexity Low_complexity 1 21 0 4 1155 302 258 95 21 chr9 74740359 74740454 -49335718 - L1M5 LINE L1 -2962 3184 3083 4 1155 300 264 31 94 chr9 74741077 74741173 -49334999 + L1M4b LINE L1 2175 2264 -5070 4 1155 198 0 0 0 chr9 74742149 74742171 -49334001 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 1155 218 217 0 0 chr9 74744142 74744188 -49331984 + T-rich Low_complexity Low_complexity 1 46 0 4 1155 249 108 0 0 chr9 74744243 74744280 -49331892 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1155 1795 220 16 13 chr9 74744557 74744935 -49331237 - Lx8 LINE L1 -134 7339 6961 4 1155 429 226 36 0 chr9 74745023 74745107 -49331065 - B1_Mur3 SINE Alu -62 87 1 4 1155 402 241 16 49 chr9 74745409 74745531 -49330641 + PB1 SINE Alu 1 118 -9 4 1155 377 281 146 39 chr9 74745562 74745740 -49330432 + MIRb SINE MIR 23 219 -49 4 1155 891 142 161 0 chr9 74745742 74745904 -49330268 - URR1A DNA MER1_type -27 199 12 4 1155 2083 109 77 89 chr9 74746038 74746429 -49329743 - ORR1B1 LTR MaLR -8 386 1 4 1155 22 0 0 0 chr9 74746473 74746495 -49329677 + AT_rich Low_complexity Low_complexity 1 22 0 4 1155 625 233 0 89 chr9 74746498 74746677 -49329495 - RSINE1 SINE B4 0 165 3 4 1155 676 222 0 15 chr9 74747086 74747223 -49328949 + B1_Mur1 SINE Alu 3 137 -12 4 1155 342 0 0 0 chr9 74747293 74747331 -49328841 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1155 315 0 0 0 chr9 74747331 74747365 -49328807 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1155 546 284 0 80 chr9 74747366 74747433 -49328739 - RSINE1 SINE B4 -31 134 76 4 1155 2975 140 15 45 chr9 74747433 74747708 -49328464 - RLTR28 LTR ERVL 0 524 258 4 1155 1576 52 0 20 chr9 74747708 74747904 -49328268 - B2_Mm1a SINE B2 -1 192 1 4 1155 2975 140 15 45 chr9 74747904 74748166 -49328006 - RLTR28 LTR ERVL -267 257 3 4 1155 546 284 0 80 chr9 74748166 74748236 -49327936 - RSINE1 SINE B4 -90 75 8 4 1155 1551 67 0 5 chr9 74748261 74748457 -49327715 - B2_Mm2 SINE B2 0 195 1 4 1155 885 139 119 0 chr9 74748910 74749061 -49327111 - URR1A DNA MER1_type 0 226 58 4 1155 317 279 46 11 chr9 74749100 74749187 -49326985 + PB1D7 SINE Alu 29 118 -2 4 1155 234 172 61 0 chr9 74749223 74749322 -49326850 + (TA)n Simple_repeat Simple_repeat 1 105 0 4 1155 264 311 101 0 chr9 74750244 74750363 -49325809 + L1M4 LINE L1 33 163 -6379 4 1155 392 339 98 4 chr9 74750424 74750658 -49325514 + L1M4 LINE L1 379 634 -5908 4 1155 4775 125 41 6 chr9 74750817 74751527 -49324645 + RMER19A LTR ERVK 3 737 0 4 1155 1795 159 36 15 chr9 74751635 74751968 -49324204 + RLTR11A2 LTR ERVK 2 341 -186 4 1155 527 269 32 7 chr9 74751971 74752166 -49324006 + L1M3 LINE L1 5259 5468 -715 4 1155 587 290 7 14 chr9 74752181 74752328 -49323844 + B1F2 SINE Alu 3 148 -1 4 1155 439 231 89 16 chr9 74752605 74752638 -49323534 - RMER30 DNA MER1_type -70 132 101 4 1155 591 15 0 0 chr9 74752638 74752706 -49323466 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1155 439 231 89 16 chr9 74752706 74752795 -49323377 - RMER30 DNA MER1_type -102 100 1 4 1155 282 235 18 110 chr9 74753549 74753668 -49322504 + PB1D7 SINE Alu 3 110 -10 4 1155 284 216 0 63 chr9 74753928 74754007 -49322165 - ID4 SINE ID -8 75 2 4 1155 439 226 75 38 chr9 74754459 74754592 -49321580 - B1F1 SINE Alu -1 148 11 4 1155 333 0 0 0 chr9 74755116 74755153 -49321019 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1155 23 0 0 0 chr9 74755355 74755378 -49320794 + AT_rich Low_complexity Low_complexity 1 23 0 4 1155 288 257 106 81 chr9 74755714 74755875 -49320297 + YREP_Mm Unknown Unknown 132 296 -1516 4 1155 650 214 30 0 chr9 74755764 74755895 -49320277 - ID_B1 SINE B4 -9 215 81 4 1155 366 23 0 0 chr9 74756206 74756249 -49319923 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1155 192 77 0 0 chr9 74756251 74756277 -49319895 + (CCTG)n Simple_repeat Simple_repeat 1 26 0 4 1155 395 268 37 31 chr9 74756277 74756439 -49319733 + (TCTG)n Simple_repeat Simple_repeat 2 164 0 4 1155 567 185 0 0 chr9 74756452 74756675 -49319497 + (TG)n Simple_repeat Simple_repeat 1 223 0 4 1155 249 221 188 14 chr9 74756704 74756773 -49319399 - ID4_ SINE ID 0 83 3 4 1155 351 209 0 0 chr9 74756939 74757006 -49319166 - tRNA-Ala-GCY_ tRNA tRNA -4 71 5 4 1155 720 231 57 70 chr9 74757481 74757698 -49318474 + B4A SINE B4 9 222 -70 4 1155 711 184 37 0 chr9 74757698 74757834 -49318338 + B3A SINE B2 2 142 -56 4 1155 417 90 0 0 chr9 74757848 74757915 -49318257 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 1155 495 0 0 0 chr9 74757915 74757970 -49318202 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1155 371 253 389 19 chr9 74757970 74758127 -49318045 - ID_B1 SINE B4 -9 215 1 4 1155 856 225 0 17 chr9 74758474 74758646 -49317526 + ID_B1 SINE B4 56 224 0 4 1155 1434 58 26 21 chr9 74758651 74758843 -49317329 + B2_Mm2 SINE B2 2 194 -1 4 1155 628 219 0 8 chr9 74758880 74759004 -49317168 - PB1 SINE Alu -2 125 3 4 1155 336 48 0 0 chr9 74759212 74759254 -49316918 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1155 378 0 0 0 chr9 74759254 74759295 -49316877 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1155 517 224 10 0 chr9 74759298 74759396 -49316776 - B3A SINE B2 -42 156 58 4 1155 244 265 0 39 chr9 74759416 74759518 -49316654 - PB1D10 SINE Alu -18 99 2 4 1155 640 167 0 55 chr9 74759564 74759691 -49316481 + PB1D9 SINE Alu 1 120 0 4 1155 32 67 0 0 chr9 74760174 74760234 -49315938 + AT_rich Low_complexity Low_complexity 1 60 0 4 1155 252 0 0 0 chr9 74760257 74760285 -49315887 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1155 784 250 58 24 chr9 74760289 74760494 -49315678 - ID_B1 SINE B4 -12 212 1 4 1155 383 264 7 58 chr9 74761476 74761506 -49314666 + ID_B1 SINE B4 57 186 -38 4 1155 617 168 9 0 chr9 74761506 74761613 -49314559 + B1F SINE Alu 1 108 -41 4 1155 235 163 20 20 chr9 74761622 74761672 -49314500 + GA-rich Low_complexity Low_complexity 1 50 0 4 1155 272 95 360 41 chr9 74761977 74762077 -49314095 - B2_Mm2 SINE B2 0 195 64 4 1155 1137 79 91 0 chr9 74762116 74762281 -49313891 - B2_Mm1t SINE B2 -13 180 1 4 1155 21 36 0 0 chr9 74762344 74762372 -49313800 + AT_rich Low_complexity Low_complexity 1 28 0 4 1155 834 177 0 0 chr9 74762384 74762514 -49313658 - B3 SINE B2 -86 130 1 4 1155 6091 91 29 5 chr9 74762548 74763389 -49312783 - Lx4A LINE L1 0 7058 6198 4 1155 306 0 0 0 chr9 74763530 74763564 -49312608 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1155 503 340 10 15 chr9 74763589 74763732 -49312440 - Charlie7 DNA MER1_type -462 2150 2006 4 1155 207 0 0 0 chr9 74763732 74763755 -49312417 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1155 503 340 10 15 chr9 74763755 74763817 -49312355 - Charlie7 DNA MER1_type -607 2005 1947 4 1155 957 263 64 90 chr9 74764028 74764417 -49311755 + MTE2a LTR MaLR 1 379 0 4 1155 227 173 19 0 chr9 74765067 74765119 -49311053 + (CAT)n Simple_repeat Simple_repeat 2 54 0 4 1155 350 267 97 32 chr9 74765185 74765278 -49310894 + PB1D10 SINE Alu 7 105 -12 4 1155 234 339 86 9 chr9 74765278 74765301 -49310871 + ID_B1 SINE B4 88 212 -12 4 1155 3128 139 182 10 chr9 74765312 74765575 -49310597 - RMER6C LTR ERVK 0 690 346 4 1155 206 105 26 0 chr9 74765575 74765613 -49310559 + (AACTG)n Simple_repeat Simple_repeat 2 40 0 4 1155 3128 139 182 10 chr9 74765613 74765938 -49310234 - RMER6C LTR ERVK -345 345 1 4 1155 328 355 77 18 chr9 74765939 74766108 -49310064 + MIR SINE MIR 68 246 -16 4 1155 711 265 95 0 chr9 74766296 74766496 -49309676 - ID_B1 SINE B4 -4 220 2 4 1155 951 207 4 54 chr9 74767664 74767904 -49308268 - Lx4B LINE L1 0 7058 6831 4 1155 1174 155 40 10 chr9 74767865 74768067 -49308105 + Lx4B LINE L1 6635 6842 -216 4 1155 252 86 0 0 chr9 74768234 74768269 -49307903 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1155 413 270 16 12 chr9 74768290 74768407 -49307765 - PB1D10 SINE Alu -23 94 1 4 1155 344 228 152 0 chr9 74768436 74768515 -49307657 + RMER30 DNA MER1_type 1 91 -111 4 1155 265 256 178 0 chr9 74768486 74768576 -49307596 - Charlie12 DNA MER1_type -2725 148 43 4 1155 423 261 59 7 chr9 74768845 74768980 -49307192 + B1F1 SINE Alu 1 142 -7 4 1155 279 324 0 0 chr9 74768993 74769067 -49307105 + ID4 SINE ID 8 81 -2 4 1155 299 87 58 0 chr9 74769087 74769156 -49307016 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 5 1155 795 264 30 25 chr9 74769503 74769701 -49306471 + ID_B1 SINE B4 26 224 0 5 1155 25 51 0 0 chr9 74770186 74770225 -49305947 + AT_rich Low_complexity Low_complexity 1 39 0 5 1155 358 281 2 54 chr9 74770487 74770591 -49305581 + B4 SINE B4 1 101 -191 5 1155 180 111 0 0 chr9 74770593 74770620 -49305552 + (CAG)n Simple_repeat Simple_repeat 1 27 0 5 1155 756 284 72 5 chr9 74770629 74770824 -49305348 + B4 SINE B4 85 292 0 5 1155 226 283 0 0 chr9 74771630 74771676 -49304496 + B1F1 SINE Alu 2 47 -102 5 1155 287 278 82 57 chr9 74771658 74771678 -49304494 - B4 SINE B4 -166 126 2 5 1155 552 235 0 0 chr9 74771678 74771780 -49304392 - B3 SINE B2 -113 103 2 5 1155 645 370 94 71 chr9 74771780 74772380 -49303792 + MER115 DNA Tip100 41 654 -39 5 1155 215 194 0 0 chr9 74772594 74772630 -49303542 + (CTG)n Simple_repeat Simple_repeat 3 38 0 5 1155 608 200 132 49 chr9 74772651 74772856 -49303316 - ID_B1 SINE B4 -2 222 1 5 1155 181 326 50 40 chr9 74773065 74773164 -49303008 + MIRc SINE MIR 50 149 -119 5 1155 346 232 29 0 chr9 74773133 74773202 -49302970 + MIR3 SINE MIR 114 184 -24 5 1155 288 250 0 0 chr9 74773758 74773808 -49302364 + B1F1 SINE Alu 4 53 -96 5 1155 776 261 73 111 chr9 74773808 74774017 -49302155 + B4A SINE B4 1 220 -72 5 1155 507 248 0 26 chr9 74774017 74774133 -49302039 + PB1D9 SINE Alu 1 113 -7 5 1155 776 261 73 111 chr9 74774133 74774212 -49301960 + B4A SINE B4 221 278 -14 5 1155 281 305 31 31 chr9 74774296 74774394 -49301778 + B1F1 SINE Alu 45 142 -7 5 1155 658 195 199 11 chr9 74774436 74774612 -49301560 + ID_B1 SINE B4 9 217 -7 5 1155 261 214 300 11 chr9 74774894 74774984 -49301188 - PB1D10 SINE Alu -1 116 1 5 1155 622 221 39 0 chr9 74774984 74775063 -49301109 - ID SINE ID -139 85 2 5 1155 571 314 112 34 chr9 74775214 74775541 -49300631 + MLT1G3 LTR MaLR 182 534 -61 5 1155 2227 104 126 245 chr9 74775558 74776219 -49299953 + MT2B2 LTR ERVL 3 584 0 5 1155 289 352 46 9 chr9 74776221 74776330 -49299842 + PB1D10 SINE Alu 5 117 0 5 1155 872 241 135 29 chr9 74776357 74776631 -49299541 + Lx8 LINE L1 7169 7471 -2 5 1155 268 202 19 37 chr9 74776844 74776952 -49299220 + CT-rich Low_complexity Low_complexity 3 108 0 5 1155 835 139 20 40 chr9 74776963 74777113 -49299059 - B1_Mur4 SINE Alu 0 150 4 5 1155 323 226 7 167 chr9 74777000 74777138 -49299034 - MT2B LTR ERVL -337 264 149 5 1155 683 206 15 0 chr9 74777152 74777283 -49298889 - B1F SINE Alu -7 142 10 5 1155 281 305 61 61 chr9 74777174 74777338 -49298834 - MT2B LTR ERVL -325 276 113 5 1155 972 121 0 32 chr9 74777534 74777688 -49298484 + B1_Mur4 SINE Alu 2 150 0 5 1155 243 0 0 0 chr9 74777692 74777719 -49298453 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1155 290 268 28 0 chr9 74778032 74778103 -49298069 - ID4_ SINE ID -9 74 2 5 1155 330 211 42 10 chr9 74778154 74778250 -49297922 - B1F SINE Alu -33 116 18 5 1155 330 198 39 16 chr9 74778416 74778544 -49297628 + GA-rich Low_complexity Low_complexity 2 132 0 5 1155 255 170 0 0 chr9 74778548 74778595 -49297577 + G-rich Low_complexity Low_complexity 5 51 0 5 1155 271 143 0 0 chr9 74778596 74778638 -49297534 + PB1D9 SINE Alu 1 42 -78 5 1155 607 318 0 50 chr9 74778851 74779053 -49297119 + Lx6 LINE L1 7199 7390 -70 5 1155 33 0 0 0 chr9 74779053 74779086 -49297086 + AT_rich Low_complexity Low_complexity 1 33 0 5 1155 362 39 39 0 chr9 74780013 74780064 -49296108 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 5 1155 891 169 7 0 chr9 74780117 74780265 -49295907 - B1_Mur4 SINE Alu -1 149 1 5 1155 23 0 0 0 chr9 74780290 74780313 -49295859 + AT_rich Low_complexity Low_complexity 1 23 0 5 1155 633 282 15 125 chr9 74780666 74780994 -49295178 - B4A SINE B4 0 292 1 5 1155 306 227 80 0 chr9 74781142 74781230 -49294942 - L1MC4 LINE L1 -410 7632 7538 5 1155 543 326 137 10 chr9 74781760 74782071 -49294101 + ORR1E LTR MaLR 1 351 -8 5 1155 893 339 110 47 chr9 74782071 74782852 -49293320 + ORR1E-int LTR MaLR 4 833 -747 5 1155 327 146 0 0 chr9 74783718 74783773 -49292399 + (CACCAT)n Simple_repeat Simple_repeat 6 60 0 5 1155 371 289 21 0 chr9 74784175 74784272 -49291900 - PB1D10 SINE Alu -10 107 9 5 1155 423 277 53 8 chr9 74784453 74784584 -49291588 + B1F SINE Alu 4 140 -9 5 1155 325 229 14 0 chr9 74784600 74784670 -49291502 + ID2 SINE ID 2 72 -11 5 1155 775 292 16 5 chr9 74785050 74785243 -49290929 + ID_B1 SINE B4 1 195 -29 5 1155 2865 137 289 0 chr9 74785407 74785933 -49290239 + RLTR33 LTR ERVK 1 678 0 5 1155 496 326 102 19 chr9 74786111 74786377 -49289795 + B4A SINE B4 1 288 -4 5 1155 210 295 0 16 chr9 74786697 74786759 -49289413 + GA-rich Low_complexity Low_complexity 1 61 0 5 1155 513 272 24 8 chr9 74787641 74787767 -49288405 - B1F SINE Alu 0 149 22 5 1155 565 287 0 0 chr9 74787820 74787942 -49288230 + ID_B1 SINE B4 86 207 -17 5 1155 455 288 43 0 chr9 74787942 74787955 -49288217 + B1F SINE Alu 5 145 -4 5 1155 369 0 0 0 chr9 74787955 74787996 -49288176 + (CATA)n Simple_repeat Simple_repeat 4 44 0 5 1155 514 200 0 103 chr9 74788047 74788164 -49288008 + B1F2 SINE Alu 25 129 -20 5 1155 678 25 0 0 chr9 74788169 74788249 -49287923 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 5 1155 2393 80 6 55 chr9 74788277 74788621 -49287551 + ORR1A2 LTR MaLR 1 327 0 5 1155 493 282 78 17 chr9 74789035 74789215 -49286957 - ORR1E LTR MaLR -168 191 1 5 1155 327 271 250 19 chr9 74789512 74789772 -49286400 + L2 LINE L2 2728 3047 -372 5 1155 698 143 0 8 chr9 74789982 74790116 -49286056 + GA-rich Low_complexity Low_complexity 1 133 0 5 1155 358 258 129 0 chr9 74790212 74790305 -49285867 - ID_B1 SINE B4 -36 188 84 5 1155 21 0 0 0 chr9 74790337 74790358 -49285814 + AT_rich Low_complexity Low_complexity 1 21 0 5 1155 659 278 56 32 chr9 74790613 74790829 -49285343 + ID_B1 SINE B4 3 223 -1 5 1155 414 282 39 0 chr9 74790980 74791083 -49285089 - B1F SINE Alu -24 125 19 5 1155 2221 158 156 14 chr9 74791110 74791622 -49284550 - RMER4B LTR ERVK 0 585 1 5 1155 441 95 0 0 chr9 74791755 74791818 -49284354 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1155 198 0 0 0 chr9 74791818 74791839 -49284333 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1155 488 218 0 56 chr9 74791846 74791953 -49284219 - PB1D10 SINE Alu -9 108 8 5 1155 417 248 53 0 chr9 74793532 74793645 -49282527 - PB1D7 SINE Alu -1 119 1 5 1155 1020 158 105 0 chr9 74793872 74794062 -49282110 + B3 SINE B2 3 212 -4 5 1155 1299 97 5 11 chr9 74794109 74794296 -49281876 + B2_Mm2 SINE B2 1 186 -9 5 1155 653 194 0 6 chr9 74795269 74795450 -49280722 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1155 724 249 11 16 chr9 74795452 74795636 -49280536 - B3A SINE B2 -6 192 10 5 1155 1026 52 81 0 chr9 74796189 74796325 -49279847 - B1_Mus2 SINE Alu 0 147 1 5 1155 201 247 14 0 chr9 74796416 74796489 -49279683 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 5 1155 827 244 6 0 chr9 74796511 74796679 -49279493 + B3A SINE B2 1 169 -29 5 1155 614 274 125 18 chr9 74796758 74797037 -49279135 + Lx7 LINE L1 5619 5927 -1769 5 1155 296 294 18 18 chr9 74797560 74797671 -49278501 + PB1D10 SINE Alu 6 116 -1 5 1155 679 206 223 0 chr9 74797756 74797931 -49278241 - B3 SINE B2 -1 215 2 5 1155 650 203 71 7 chr9 74797951 74798105 -49278067 - B2_Mm2 SINE B2 -30 165 2 5 1155 771 175 20 34 chr9 74798374 74798522 -49277650 + B1_Mus2 SINE Alu 1 146 -1 5 1155 501 248 8 81 chr9 74798551 74798674 -49277498 - B1F1 SINE Alu -17 132 19 5 1155 270 0 0 0 chr9 74798725 74798755 -49277417 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1155 551 215 8 62 chr9 74798755 74798884 -49277288 - RSINE1 SINE B4 -41 124 3 5 1155 492 217 253 6 chr9 74799437 74799599 -49276573 + B3 SINE B2 3 204 -12 5 1155 282 236 0 0 chr9 74799618 74799673 -49276499 - ID4_ SINE ID -28 55 1 5 1155 223 186 0 0 chr9 74801467 74801510 -49274662 + T-rich Low_complexity Low_complexity 1 43 0 5 1155 342 338 35 14 chr9 74802073 74802214 -49273958 - B1F1 SINE Alu -1 148 5 5 1155 300 308 19 93 chr9 74802214 74802231 -49273941 - ID_B1 SINE B4 0 221 76 5 1155 519 244 16 0 chr9 74802350 74802473 -49273699 - B1_Mur3 SINE Alu -24 125 1 5 1155 536 224 69 7 chr9 74802577 74802721 -49273451 + RSINE1 SINE B4 11 163 -2 5 1155 22 0 0 0 chr9 74802726 74802748 -49273424 + AT_rich Low_complexity Low_complexity 1 22 0 5 1155 339 247 21 0 chr9 74802770 74802863 -49273309 - PB1D10 SINE Alu -17 100 6 5 1155 240 265 0 29 chr9 74802806 74802876 -49273296 - B4A SINE B4 -145 147 80 5 1155 211 242 16 0 chr9 74803121 74803183 -49272989 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1155 253 188 217 0 chr9 74803930 74803999 -49272173 - ID_B1 SINE B4 -28 196 113 5 1155 805 239 0 22 chr9 74804024 74804208 -49271964 + B3A SINE B2 1 180 -18 5 1155 7577 48 13 5 chr9 74804233 74805157 -49271015 - L1Md_F2 LINE L1 0 6582 5652 5 1155 290 260 103 37 chr9 74805412 74805548 -49270624 - Tigger15a DNA TcMar -452 263 119 5 1155 1200 61 0 0 chr9 74805607 74805755 -49270417 - B1_Mus1 SINE Alu 0 148 1 6 1155 249 196 39 0 chr9 74805761 74805812 -49270360 - ID_B1 SINE B4 -3 221 169 6 1155 1049 78 28 0 chr9 74805891 74806033 -49270139 + B1_Mus1 SINE Alu 2 147 -1 6 1155 756 231 100 21 chr9 74806179 74806369 -49269803 - B3 SINE B2 -11 205 1 6 1155 204 125 0 0 chr9 74806777 74806809 -49269363 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 6 1155 188 135 27 0 chr9 74806847 74806884 -49269288 + GA-rich Low_complexity Low_complexity 4 41 0 6 1155 403 215 11 0 chr9 74807086 74807179 -49268993 + URR1B DNA MER1_type 131 224 -1 6 1155 252 350 42 7 chr9 74808604 74808748 -49267424 - MIR SINE MIR -38 224 76 6 1155 311 259 0 36 chr9 74808859 74808943 -49267229 + RSINE1 SINE B4 21 101 -64 6 1155 305 307 95 46 chr9 74809011 74809187 -49266985 + MIR SINE MIR 79 268 0 6 1155 207 69 0 0 chr9 74809679 74809708 -49266464 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1155 421 276 0 0 chr9 74809710 74809808 -49266364 - PB1D7 SINE Alu -11 109 12 6 1155 282 53 0 51 chr9 74809840 74809899 -49266273 - B2_Mm1t SINE B2 -5 188 133 6 1155 243 0 0 0 chr9 74809925 74809952 -49266220 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 1155 822 100 18 16 chr9 74809952 74810093 -49266079 - B2_Mm1a SINE B2 -33 160 2 6 1155 453 263 60 7 chr9 74810287 74810428 -49265744 + B1F SINE Alu 1 149 0 6 1155 468 77 0 0 chr9 74811056 74811121 -49265051 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 6 1155 406 252 214 0 chr9 74811321 74811424 -49264748 - ID_B1 SINE B4 -98 126 2 6 1155 315 0 0 0 chr9 74811445 74811480 -49264692 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1155 206 248 269 28 chr9 74811786 74811927 -49264245 + MIRc SINE MIR 70 244 -24 6 1155 396 202 78 29 chr9 74812427 74812529 -49263643 + B3 SINE B2 2 108 -108 6 1155 267 31 0 0 chr9 74812540 74812572 -49263600 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1155 201 303 40 0 chr9 74812572 74812648 -49263524 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 6 1155 335 247 103 0 chr9 74813611 74813708 -49262464 - PB1D10 SINE Alu 0 117 11 6 1155 1704 168 146 3 chr9 74814472 74814801 -49261371 + ORR1C1 LTR MaLR 3 378 0 6 1155 453 252 0 45 chr9 74816124 74816236 -49259936 + B1_Mus1 SINE Alu 7 113 -35 6 1155 297 155 0 0 chr9 74816237 74816295 -49259877 + (CAGG)n Simple_repeat Simple_repeat 2 59 0 6 1155 498 33 0 0 chr9 74816906 74816966 -49259206 + (GTTTG)n Simple_repeat Simple_repeat 5 64 0 6 1155 445 280 112 15 chr9 74816971 74817105 -49259067 - ID_B1 SINE B4 -8 216 70 6 1155 402 263 239 19 chr9 74817263 74817422 -49258750 + B3A SINE B2 1 194 -4 6 1155 271 308 22 11 chr9 74817617 74817709 -49258463 - B1F1 SINE Alu -56 93 1 6 1155 1265 136 16 5 chr9 74817946 74818138 -49258034 + B2_Mm2 SINE B2 2 195 0 6 1155 363 119 0 0 chr9 74819010 74819077 -49257095 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1155 1181 55 7 0 chr9 74819291 74819436 -49256736 - B1_Mus1 SINE Alu -1 147 2 6 1155 387 0 0 0 chr9 74820189 74820232 -49255940 + (TATG)n Simple_repeat Simple_repeat 1 43 0 6 1155 313 214 36 73 chr9 74820245 74820381 -49255791 + B1F SINE Alu 17 147 -2 6 1155 359 360 29 22 chr9 74820398 74820537 -49255635 + B1F1 SINE Alu 4 143 -6 6 1155 24 67 0 0 chr9 74821413 74821458 -49254714 + AT_rich Low_complexity Low_complexity 1 45 0 6 1155 243 0 0 0 chr9 74821486 74821513 -49254659 + (TATG)n Simple_repeat Simple_repeat 1 27 0 6 1155 633 153 27 0 chr9 74821523 74821634 -49254538 - B1_Mus1 SINE Alu -1 147 34 6 1155 333 219 12 24 chr9 74821652 74821736 -49254436 - PB1D10 SINE Alu 0 117 35 6 1155 349 279 60 43 chr9 74821884 74822000 -49254172 - PB1D7 SINE Alu -2 118 1 6 1155 344 274 0 50 chr9 74821917 74822017 -49254155 - ID_B1 SINE B4 -60 164 70 6 1155 391 217 42 25 chr9 74822994 74823112 -49253060 + BC1_Mm scRNA scRNA 2 121 -31 6 1155 21 0 0 0 chr9 74824809 74824830 -49251342 + AT_rich Low_complexity Low_complexity 1 21 0 6 1155 279 54 0 0 chr9 74824921 74824958 -49251214 + (TGG)n Simple_repeat Simple_repeat 1 37 0 6 1155 613 207 0 0 chr9 74824959 74825075 -49251097 - B1_Mur3 SINE Alu -25 124 9 6 1155 332 292 92 35 chr9 74824968 74825110 -49251062 - B4A SINE B4 -87 205 56 6 1155 314 243 14 0 chr9 74825236 74825306 -49250866 - ID4 SINE ID 0 83 13 6 1155 539 259 0 8 chr9 74825556 74825673 -49250499 + PB1D10 SINE Alu 2 117 0 6 1155 238 271 23 12 chr9 74826626 74826712 -49249460 + CT-rich Low_complexity Low_complexity 3 89 0 6 1155 295 265 84 0 chr9 74827292 74827375 -49248797 + PB1D10 SINE Alu 1 90 -27 6 1155 357 24 0 0 chr9 74828242 74828284 -49247888 + (CAAT)n Simple_repeat Simple_repeat 4 45 0 6 1155 261 0 0 0 chr9 74828287 74828316 -49247856 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 1155 477 0 0 0 chr9 74828316 74828369 -49247803 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1155 350 328 17 0 chr9 74828661 74828780 -49247392 + B1F SINE Alu 23 143 -6 6 1155 275 348 102 15 chr9 74828776 74828794 -49247378 + ID SINE ID 70 87 -137 6 1155 486 0 0 0 chr9 74828794 74828848 -49247324 + (TAA)n Simple_repeat Simple_repeat 2 55 0 6 1155 275 348 102 15 chr9 74828848 74828966 -49247206 + ID_B1 SINE B4 88 218 -6 6 1155 285 283 168 21 chr9 74828975 74829234 -49246938 + RSINE1 SINE B4 4 281 -11 6 1155 221 290 0 28 chr9 74829239 74829310 -49246862 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1155 4825 59 11 2 chr9 74830859 74831474 -49244698 + L1_Mus3 LINE L1 6006 6626 -12 6 1155 1139 63 0 0 chr9 74831490 74831632 -49244540 + B1_Mus1 SINE Alu 1 142 -6 6 1155 938 127 13 0 chr9 74831890 74832047 -49244125 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 6 1155 382 344 31 38 chr9 74832373 74832533 -49243639 + RSINE1 SINE B4 5 163 -2 6 1155 260 279 0 8 chr9 74832535 74832658 -49243514 + (CA)n Simple_repeat Simple_repeat 1 122 0 6 1155 228 121 0 0 chr9 74832881 74832914 -49243258 - PB1D7 SINE Alu -68 52 20 6 1155 563 203 65 0 chr9 74833398 74833536 -49242636 + B1_Mur2 SINE Alu 3 149 0 6 1155 445 316 7 7 chr9 74834168 74834305 -49241867 + ID_B1 SINE B4 80 216 -8 6 1155 1070 189 40 0 chr9 74834954 74835155 -49241017 - B3 SINE B2 -5 211 3 6 1155 496 222 47 16 chr9 74835592 74835720 -49240452 - ID_B1 SINE B4 -8 216 85 6 1155 239 286 14 0 chr9 74836325 74836395 -49239777 - ID2 SINE ID -7 76 6 6 1155 2809 214 123 30 chr9 74836572 74837290 -49238882 - RMER1B Other Other -14 1052 88 6 1155 200 155 16 49 chr9 74837301 74837362 -49238810 + T-rich Low_complexity Low_complexity 2 60 0 6 1155 518 266 13 19 chr9 74838122 74838313 -49237859 - MLT1A0 LTR MaLR -5 403 210 6 1155 256 273 34 11 chr9 74838320 74838409 -49237763 - MLT1A0 LTR MaLR -271 94 4 6 1155 493 272 137 77 chr9 74838707 74839073 -49237099 - Lx9 LINE L1 0 7644 7257 6 1155 743 297 62 13 chr9 74839087 74839312 -49236860 - Lx9 LINE L1 -456 7188 6953 6 1155 518 146 62 0 chr9 74840062 74840158 -49236014 + B1_Mus2 SINE Alu 44 145 -2 6 1155 808 276 21 2 chr9 74840191 74840395 -49235777 + B3A SINE B2 1 203 -13 6 1155 231 167 0 0 chr9 74840395 74840437 -49235735 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1155 229 316 0 0 chr9 74841147 74841201 -49234971 + PB1D10 SINE Alu 1 54 -63 6 1155 1122 108 0 12 chr9 74841201 74841361 -49234811 + B2_Mm2 SINE B2 2 161 -34 6 1155 216 0 0 0 chr9 74841361 74841385 -49234787 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 6 1155 207 0 0 0 chr9 74841455 74841478 -49234694 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 6 1155 248 261 34 11 chr9 74841799 74841888 -49234284 + MER104 DNA Tc2 88 178 -3 6 144 381 251 123 62 chr9 74841981 74842176 -49233996 - B3A SINE B2 -1 215 9 6 1156 401 250 235 16 chr9 74842810 74842993 -49233179 + ID_B1 SINE B4 2 224 0 6 1156 331 312 163 28 chr9 74843092 74843270 -49232902 + L1M5 LINE L1 3983 4184 -1962 6 1156 377 274 107 27 chr9 74844020 74844170 -49232002 - RSINE1 SINE B4 0 165 4 6 1156 291 307 10 10 chr9 74844204 74844306 -49231866 + PB1D10 SINE Alu 1 102 -15 6 1156 369 222 9 92 chr9 74844428 74844537 -49231635 - B4 SINE B4 -15 277 178 6 1156 865 224 24 10 chr9 74844605 74844812 -49231360 - B3 SINE B2 0 216 7 6 1156 360 233 11 55 chr9 74844843 74844934 -49231238 - B3A SINE B2 -4 194 108 6 1156 226 203 27 68 chr9 74844945 74845019 -49231153 + B2_Mm2 SINE B2 107 177 -18 6 1156 478 197 114 0 chr9 74845035 74845167 -49231005 + B1F SINE Alu 3 149 0 6 1156 318 292 128 34 chr9 74845205 74845354 -49230818 + RSINE1 SINE B4 3 165 0 6 1156 262 204 140 20 chr9 74845442 74845542 -49230630 - L1MEc LINE L1 -4523 1877 1766 6 1156 305 297 11 0 chr9 74846139 74846230 -49229942 + B1F SINE Alu 44 135 -14 6 1156 918 199 75 0 chr9 74846343 74846544 -49229628 - B3 SINE B2 0 216 1 6 1156 310 286 101 70 chr9 74847114 74847272 -49228900 + RSINE1 SINE B4 3 165 0 6 1156 228 35 0 0 chr9 74847272 74847301 -49228871 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1156 1125 67 12 6 chr9 74847388 74847553 -49228619 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 6 1156 23 0 0 0 chr9 74847739 74847762 -49228410 + AT_rich Low_complexity Low_complexity 1 23 0 6 1156 618 259 94 36 chr9 74847866 74848142 -49228030 + B4A SINE B4 1 292 0 7 1156 292 298 277 0 chr9 74848190 74848331 -49227841 + B3A SINE B2 1 180 -18 7 1156 910 134 0 20 chr9 74848371 74848523 -49227649 + B1_Mur4 SINE Alu 1 149 -1 7 1156 516 266 0 0 chr9 74849839 74849952 -49226220 + ID_B1 SINE B4 111 223 -1 7 1156 451 91 39 0 chr9 74850003 74850080 -49226092 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 7 1156 435 252 173 0 chr9 74850750 74850877 -49225295 + RSINE1 SINE B4 2 150 -15 7 1156 617 181 43 0 chr9 74851557 74851673 -49224499 - B1F SINE Alu 0 149 29 7 1156 465 302 0 0 chr9 74851753 74851869 -49224303 + ID_B1 SINE B4 104 219 -5 7 1156 224 242 0 233 chr9 74851889 74851975 -49224197 + ID4 SINE ID 2 67 -16 7 1156 5642 77 23 7 chr9 74852474 74853231 -49222941 - L1_Mus1 LINE L1 0 6567 5795 7 1156 1421 86 16 0 chr9 74853231 74853418 -49222754 - B2_Mm2 SINE B2 -5 190 1 7 1156 5642 77 23 7 chr9 74853418 74853432 -49222740 - L1_Mus1 LINE L1 -773 5794 5783 7 1156 192 40 0 0 chr9 74853432 74853457 -49222715 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1156 980 53 0 15 chr9 74853460 74853594 -49222578 - B1_Mus2 SINE Alu 0 147 16 7 1156 922 155 7 7 chr9 74853605 74853754 -49222418 - B1_Mur4 SINE Alu 0 150 2 7 1156 702 207 13 7 chr9 74853798 74853949 -49222223 - B3 SINE B2 0 216 65 7 1156 483 18 0 0 chr9 74854382 74854438 -49221734 + (TC)n Simple_repeat Simple_repeat 2 57 0 7 1156 1036 97 28 0 chr9 74854438 74854582 -49221590 - B1_Mus1 SINE Alu 0 148 1 7 1156 636 70 0 0 chr9 74855353 74855439 -49220733 + (GGGA)n Simple_repeat Simple_repeat 4 89 0 7 1156 1077 108 0 0 chr9 74855754 74855902 -49220270 - B1_Mur4 SINE Alu 0 150 3 7 1156 367 282 45 0 chr9 74855969 74856077 -49220095 + B1F1 SINE Alu 12 135 -14 7 1156 782 184 13 26 chr9 74856083 74856234 -49219938 - B1_Mur4 SINE Alu -1 149 1 7 1156 378 57 0 0 chr9 74858645 74858698 -49217474 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1156 774 60 0 0 chr9 74859487 74859587 -49216585 + (TC)n Simple_repeat Simple_repeat 1 100 0 7 1156 186 71 0 0 chr9 74859606 74859634 -49216538 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1156 378 0 0 0 chr9 74859711 74859753 -49216419 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 7 1156 351 255 28 64 chr9 74859829 74859938 -49216234 - PB1 SINE Alu -7 120 16 7 1156 387 179 28 0 chr9 74859941 74860047 -49216125 + (TA)n Simple_repeat Simple_repeat 1 109 0 7 1156 1059 235 0 5 chr9 74860152 74860357 -49215815 - B3 SINE B2 -11 205 2 7 1156 1300 88 49 11 chr9 74861090 74861274 -49214898 + B2_Mm2 SINE B2 1 191 -4 7 1156 239 237 0 26 chr9 74861669 74861747 -49214425 + (CATA)n Simple_repeat Simple_repeat 3 78 0 7 1156 260 281 0 30 chr9 74862072 74862138 -49214034 - ID4 SINE ID 0 83 20 7 1156 250 299 0 38 chr9 74862073 74862153 -49214019 - ID SINE ID -141 83 7 7 1156 621 0 0 0 chr9 74862238 74862307 -49213865 + (TC)n Simple_repeat Simple_repeat 1 69 0 7 1156 563 262 236 0 chr9 74862758 74862946 -49213226 + B4A SINE B4 9 241 -51 7 1156 1197 51 0 0 chr9 74862946 74863103 -49213069 + B2_Mm2 SINE B2 2 158 -37 7 1156 186 43 0 0 chr9 74863190 74863213 -49212959 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1156 240 262 112 0 chr9 74863462 74863542 -49212630 + RSINE1 SINE B4 73 161 -4 7 1156 986 172 74 20 chr9 74863818 74864020 -49212152 + B3 SINE B2 1 213 -3 7 1156 431 112 12 0 chr9 74864190 74864270 -49211902 + (TCCC)n Simple_repeat Simple_repeat 2 82 0 7 1156 961 155 0 0 chr9 74864558 74864700 -49211472 - B1_Mur4 SINE Alu -8 142 1 7 1156 3144 34 16 3 chr9 74865112 74865491 -49210681 - L1Md_F3 LINE L1 0 6584 6201 7 1156 476 293 21 21 chr9 74865818 74865961 -49210211 - B1F SINE Alu -5 144 2 7 1156 1028 0 0 16 chr9 74866030 74866157 -49210015 + L1Md_F2 LINE L1 6445 6569 -13 7 1156 864 114 0 0 chr9 74866161 74866292 -49209880 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 7 1156 291 253 20 40 chr9 74868031 74868130 -49208042 + B1F SINE Alu 53 149 0 7 1156 324 264 85 0 chr9 74868701 74868807 -49207365 - PB1D10 SINE Alu 0 117 3 7 1156 629 237 32 89 chr9 74869053 74869243 -49206929 + B3A SINE B2 4 182 -16 7 1156 289 246 78 72 chr9 74870059 74870212 -49205960 - MER5A1 DNA MER1_type -6 160 7 7 1156 496 243 0 0 chr9 74870385 74870488 -49205684 + PB1D7 SINE Alu 3 105 -15 7 1156 449 304 15 15 chr9 74870522 74870659 -49205513 + ID_B1 SINE B4 86 222 -2 7 1156 26 0 0 0 chr9 74870662 74870688 -49205484 + AT_rich Low_complexity Low_complexity 1 26 0 7 1156 23 68 0 0 chr9 74872655 74872699 -49203473 + AT_rich Low_complexity Low_complexity 1 44 0 7 1156 22 0 0 0 chr9 74872991 74873013 -49203159 + AT_rich Low_complexity Low_complexity 1 22 0 7 1156 713 162 7 27 chr9 74873678 74873824 -49202348 - B2_Mm2 SINE B2 -51 144 2 7 1156 7940 57 10 1 chr9 74873877 74874894 -49201278 - L1Md_F2 LINE L1 -14 6568 5546 7 1156 926 54 0 0 chr9 74874894 74875005 -49201167 + L1Md_F2 LINE L1 5423 5533 -350 7 1156 1379 130 0 5 chr9 74875012 74875236 -49200936 - Lx2 LINE L1 0 6997 6775 7 1156 1739 16 0 0 chr9 74875257 74875449 -49200723 - B2_Mm1a SINE B2 0 193 2 7 1156 680 247 0 0 chr9 74875727 74875873 -49200299 + ID_B1 SINE B4 78 223 -1 7 1156 546 255 77 13 chr9 74875880 74876114 -49200058 - MER33 DNA MER1_type -70 254 6 7 1156 276 279 10 61 chr9 74876728 74876827 -49199345 + RSINE1 SINE B4 72 165 0 7 1156 431 224 0 108 chr9 74876890 74877020 -49199152 + B1F SINE Alu 33 148 -1 7 1156 441 0 0 0 chr9 74877159 74877208 -49198964 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 7 1156 578 213 28 35 chr9 74877889 74878030 -49198142 + B1F SINE Alu 2 141 -8 7 1156 408 312 132 68 chr9 74878048 74878164 -49198008 + B4A SINE B4 24 166 -126 7 1156 1784 206 62 15 chr9 74878164 74878564 -49197608 + MTD LTR MaLR 1 419 0 7 1156 408 312 132 68 chr9 74878564 74878698 -49197474 + B4A SINE B4 167 290 -2 7 1156 258 261 66 50 chr9 74878734 74878855 -49197317 - B1F SINE Alu -3 146 24 7 1156 564 238 8 0 chr9 74880525 74880647 -49195525 + B1_Mur2 SINE Alu 1 123 -26 7 1156 353 22 22 0 chr9 74880741 74880787 -49195385 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1156 764 206 91 25 chr9 74880825 74881024 -49195148 + ID_B1 SINE B4 12 223 -1 7 1156 380 274 59 52 chr9 74881202 74881337 -49194835 - MER3 DNA MER1_type -73 136 1 7 1156 316 290 0 97 chr9 74881538 74881641 -49194531 + PB1D7 SINE Alu 21 113 -7 7 1156 516 254 22 0 chr9 74882473 74882607 -49193565 - ID_B1 SINE B4 0 224 88 7 1156 306 0 0 0 chr9 74882873 74882907 -49193265 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1156 1225 54 0 0 chr9 74882955 74883102 -49193070 - B1_Mus1 SINE Alu 0 148 2 7 1156 1311 87 38 16 chr9 74883260 74883446 -49192726 - B2_Mm2 SINE B2 -4 191 2 7 1156 22 0 0 0 chr9 74883533 74883555 -49192617 + AT_rich Low_complexity Low_complexity 1 22 0 7 1156 221 177 226 0 chr9 74883626 74883688 -49192484 + PB1D7 SINE Alu 40 115 -5 7 1156 217 167 0 0 chr9 74883712 74883748 -49192424 + PB1D9 SINE Alu 49 84 -36 7 1156 311 308 8 40 chr9 74883869 74883994 -49192178 - ID_B1 SINE B4 -1 223 103 7 1156 689 260 42 24 chr9 74884264 74884477 -49191695 - ID_B1 SINE B4 -3 221 5 7 1156 270 0 0 0 chr9 74884477 74884507 -49191665 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 1156 486 0 0 0 chr9 74884521 74884575 -49191597 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1156 223 276 0 0 chr9 74884575 74884633 -49191539 - ID4 SINE ID -20 63 6 7 1156 325 310 31 8 chr9 74884623 74884753 -49191419 - B1F SINE Alu -16 133 1 7 1156 271 296 35 44 chr9 74886146 74886259 -49189913 + MIRb SINE MIR 86 197 -71 7 1156 198 0 0 0 chr9 74886280 74886302 -49189870 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1156 460 202 34 0 chr9 74886621 74886710 -49189462 + PB1D9 SINE Alu 21 112 -8 7 1156 509 110 0 12 chr9 74886998 74887081 -49189091 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 7 1156 309 242 58 50 chr9 74887319 74887458 -49188714 - B1F1 SINE Alu -9 140 1 7 1156 602 236 16 8 chr9 74887729 74887857 -49188315 - RSINE1 SINE B4 -35 130 2 7 1156 356 307 9 9 chr9 74887864 74887979 -49188193 - PB1D10 SINE Alu -2 115 1 7 1156 618 122 319 43 chr9 74888074 74888237 -49187935 + B3 SINE B2 2 209 -7 7 1156 314 275 125 0 chr9 74889089 74889169 -49187003 + PB1D7 SINE Alu 1 90 -30 7 1156 1034 215 55 0 chr9 74889419 74889619 -49186553 + B3 SINE B2 3 213 -3 7 1156 832 194 14 0 chr9 74889638 74889777 -49186395 + B1_Mur2 SINE Alu 2 142 -7 7 1156 679 126 27 0 chr9 74889819 74889930 -49186242 + B2_Mm2 SINE B2 70 183 -12 7 1156 27 0 0 0 chr9 74889951 74889978 -49186194 + AT_rich Low_complexity Low_complexity 1 27 0 7 1156 636 277 70 31 chr9 74890348 74890575 -49185597 - MLT1J LTR MaLR -6 506 271 7 1156 1070 188 69 5 chr9 74890667 74890870 -49185302 - B3 SINE B2 0 216 1 7 1156 568 262 104 31 chr9 74891044 74891237 -49184935 - ID_B1 SINE B4 -16 208 2 7 1156 332 234 0 66 chr9 74891684 74891768 -49184404 - ID4_ SINE ID -68 84 6 8 1156 26 30 0 0 chr9 74891966 74891999 -49184173 + AT_rich Low_complexity Low_complexity 1 33 0 8 1156 25 0 0 0 chr9 74892188 74892213 -49183959 + AT_rich Low_complexity Low_complexity 1 25 0 8 1156 1768 21 0 15 chr9 74892267 74892462 -49183710 - B2_Mm1a SINE B2 -1 192 1 8 1156 293 236 0 35 chr9 74892562 74892619 -49183553 - RSINE1 SINE B4 -85 80 26 8 1156 787 163 0 0 chr9 74892651 74892774 -49183398 - B1_Mus1 SINE Alu -1 147 25 8 1156 273 312 53 11 chr9 74892803 74892897 -49183275 - PB1D10 SINE Alu -6 111 14 8 1156 2660 120 30 15 chr9 74892910 74893307 -49182865 - Lx2 LINE L1 -6 6991 6589 8 1156 322 237 39 13 chr9 74893317 74893394 -49182778 - B1F1 SINE Alu -19 130 52 8 1156 262 271 0 0 chr9 74893505 74893564 -49182608 - ID2 SINE ID -11 72 14 8 1156 249 151 108 18 chr9 74893608 74893667 -49182505 - B1F SINE Alu -8 141 66 8 1156 228 86 0 0 chr9 74893686 74893721 -49182451 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1156 791 230 18 47 chr9 74893744 74893913 -49182259 + RSINE1 SINE B4 2 165 0 8 1156 728 133 85 43 chr9 74894663 74894804 -49181368 - B1_Mus1 SINE Alu -1 147 1 8 1156 376 281 71 52 chr9 74895027 74895152 -49181020 - B1F SINE Alu 0 120 1 8 1156 832 155 47 0 chr9 74895431 74895560 -49180612 + B1_Mur4 SINE Alu 3 137 -13 8 1156 426 39 0 0 chr9 74895561 74895613 -49180559 + (GAAA)n Simple_repeat Simple_repeat 1 52 0 8 1156 623 250 197 122 chr9 74895661 74895847 -49180325 - MTEb LTR MaLR 0 379 164 8 1156 550 263 21 64 chr9 74895847 74896034 -49180138 - B3A SINE B2 -17 181 3 8 1156 623 250 197 122 chr9 74896034 74896198 -49179974 - MTEb LTR MaLR -216 163 3 8 1156 268 260 39 0 chr9 74896274 74896351 -49179821 - ID2 SINE ID -2 81 2 8 1156 271 325 177 6 chr9 74896984 74897142 -49179030 - LTR33B LTR ERVL -304 199 15 8 1156 320 139 68 27 chr9 74897587 74897661 -49178511 - B1_Mus2 SINE Alu 0 147 71 8 1156 385 302 89 51 chr9 74897671 74897828 -49178344 - RSINE1 SINE B4 0 165 3 8 1156 631 139 91 18 chr9 74898195 74898305 -49177867 + B1_Mur1 SINE Alu 30 147 -2 8 1156 192 152 0 0 chr9 74898819 74898852 -49177320 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 8 1156 378 261 95 88 chr9 74899354 74899501 -49176671 - B1F SINE Alu 0 149 2 8 1156 22 35 0 0 chr9 74901053 74901082 -49175090 + AT_rich Low_complexity Low_complexity 1 29 0 8 1156 399 209 105 73 chr9 74902385 74902509 -49173663 + ID_B1 SINE B4 92 219 -5 8 1156 345 239 58 18 chr9 74902587 74902701 -49173471 - B1F1 SINE Alu -3 146 18 8 1156 707 241 14 0 chr9 74903047 74903188 -49172984 + RSINE1 SINE B4 4 146 -19 8 1156 210 37 0 0 chr9 74903214 74903241 -49172931 + (CATA)n Simple_repeat Simple_repeat 2 28 0 8 1156 225 0 0 0 chr9 74903289 74903314 -49172858 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1156 230 189 0 0 chr9 74903477 74903514 -49172658 - ID_B1 SINE B4 -90 134 98 8 1156 468 0 0 0 chr9 74904107 74904159 -49172013 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 8 1156 1031 142 195 0 chr9 74904159 74904328 -49171844 - B3 SINE B2 -14 202 1 8 1156 307 312 12 0 chr9 74905887 74905967 -49170205 - ID2 SINE ID -1 82 2 8 1156 611 278 160 0 chr9 74908319 74908506 -49167666 + ID_B1 SINE B4 2 218 -6 8 1156 382 316 98 0 chr9 74908885 74909018 -49167154 - B1F SINE Alu 0 149 4 8 1156 831 199 83 21 chr9 74909925 74910207 -49165965 + RMER6B LTR ERVK 113 456 -5 8 1156 351 148 66 0 chr9 74910213 74910274 -49165898 - MYSERV6-int LTR ERVK -8885 74 10 8 1156 279 292 56 0 chr9 74910334 74910406 -49165766 - B1F1 SINE Alu -45 104 29 8 1156 409 250 65 28 chr9 74910408 74910515 -49165657 + PB1D9 SINE Alu 2 112 -8 8 1156 23 0 0 0 chr9 74910515 74910538 -49165634 + AT_rich Low_complexity Low_complexity 1 23 0 8 1156 320 372 35 49 chr9 74910541 74910685 -49165487 + RSINE1 SINE B4 3 144 -21 8 1156 260 247 48 36 chr9 74910903 74910973 -49165199 - B1_Mur1 SINE Alu -7 142 71 8 1156 321 26 0 0 chr9 74910973 74911011 -49165161 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1156 260 247 48 36 chr9 74911011 74911024 -49165148 - B1_Mur1 SINE Alu -79 70 58 8 1156 782 280 20 54 chr9 74911057 74911261 -49164911 - B4A SINE B4 -93 199 3 8 1156 514 269 73 33 chr9 74911261 74911411 -49164761 - ID_B1 SINE B4 -67 157 2 8 1156 599 260 55 8 chr9 74911426 74911554 -49164618 - B1F SINE Alu -15 134 1 8 1156 810 159 0 82 chr9 74911736 74911894 -49164278 - B1_Mur4 SINE Alu 0 150 6 8 1156 747 263 53 79 chr9 74912179 74912347 -49163825 + B3A SINE B2 1 162 -33 8 1156 293 100 20 0 chr9 74912347 74912397 -49163775 + (CATA)n Simple_repeat Simple_repeat 4 54 0 8 1156 489 263 53 79 chr9 74912397 74912418 -49163754 + B2_Mm2 SINE B2 163 185 -10 8 1156 253 279 16 0 chr9 74912668 74912729 -49163443 + MIRm SINE MIR 212 273 -3 8 1156 396 277 82 61 chr9 74912786 74912982 -49163190 - MLT1N2 LTR MaLR -7 555 356 8 1156 565 313 0 0 chr9 74913166 74913300 -49162872 + ID_B1 SINE B4 79 212 -12 8 1156 194 0 0 37 chr9 74913301 74913328 -49162844 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 8 1156 328 250 67 39 chr9 74913354 74913458 -49162714 - ID_B1 SINE B4 -116 108 2 8 1156 342 290 54 0 chr9 74913459 74913552 -49162620 - PB1D10 SINE Alu -19 98 1 8 1156 795 176 15 0 chr9 74913640 74913771 -49162401 + RSINE1 SINE B4 2 134 -31 8 1156 279 0 0 0 chr9 74913779 74913810 -49162362 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 8 1156 258 291 67 34 chr9 74913839 74913928 -49162244 + B1F SINE Alu 7 98 -51 8 1156 413 298 71 21 chr9 74913948 74914188 -49161984 + L1MC3 LINE L1 6457 6708 -1077 8 1156 1060 46 0 0 chr9 74914322 74914453 -49161719 + B1_Mus1 SINE Alu 6 136 -12 8 1156 190 0 32 32 chr9 74914456 74914487 -49161685 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1156 290 222 5 29 chr9 74914487 74914568 -49161604 - PB1D9 SINE Alu -29 91 16 8 1156 263 308 138 18 chr9 74914804 74914913 -49161259 + B4A SINE B4 85 206 -86 8 1156 294 219 129 50 chr9 74914815 74914916 -49161256 + PB1D10 SINE Alu 9 117 0 8 1156 429 304 65 6 chr9 74914941 74915110 -49161062 + MLT1C LTR MaLR 289 467 0 8 1156 272 158 18 0 chr9 74915254 74915311 -49160861 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 1156 330 26 0 0 chr9 74915311 74915350 -49160822 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 8 1156 336 250 105 0 chr9 74915355 74915431 -49160741 + Tigger5 DNA MER2_type 7 90 -2316 8 1156 225 260 27 14 chr9 74915458 74915532 -49160640 - ID4 SINE ID -7 76 2 8 1156 965 232 60 0 chr9 74915566 74915751 -49160421 - B3 SINE B2 -19 197 2 8 1156 742 277 21 58 chr9 74915772 74916154 -49160018 + Tigger5 DNA MER2_type 2124 2402 -4 8 1156 6930 58 0 6 chr9 74916279 74917136 -49159036 - L1Md_F2 LINE L1 -12 6570 5719 8 1156 240 322 88 44 chr9 74917417 74917508 -49158664 + PB1D10 SINE Alu 9 103 -14 8 1156 391 220 43 21 chr9 74918016 74918109 -49158063 + PB1D9 SINE Alu 18 112 -8 8 1156 216 0 0 0 chr9 74918973 74918997 -49157175 + (CGG)n Simple_repeat Simple_repeat 2 25 0 8 1156 201 119 68 0 chr9 74919281 74919340 -49156832 + (CCCGG)n Simple_repeat Simple_repeat 3 65 0 8 1156 208 239 0 0 chr9 74920209 74920255 -49155917 + CT-rich Low_complexity Low_complexity 1 46 0 8 1156 312 215 0 122 chr9 74920261 74920335 -49155837 - ID4_ SINE ID -15 68 4 8 1156 452 274 45 37 chr9 74920409 74920591 -49155581 + MIRc SINE MIR 49 228 -40 8 1156 222 284 15 0 chr9 74920809 74920876 -49155296 - MIR SINE MIR -40 222 155 8 1156 229 333 81 30 chr9 74921309 74921408 -49154764 - L2b LINE L2 -16 3359 3256 8 1156 250 247 52 31 chr9 74922020 74922116 -49154056 - L1MB8 LINE L1 0 6178 6081 8 1156 420 300 36 0 chr9 74923107 74923217 -49152955 + PB1D10 SINE Alu 4 117 0 8 1156 486 0 0 0 chr9 74923713 74923767 -49152405 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1156 399 301 39 47 chr9 74923775 74923904 -49152268 - B1_Mur3 SINE Alu -16 133 6 8 1156 782 256 12 0 chr9 74924070 74924230 -49151942 + RSINE1 SINE B4 4 165 0 8 1156 1087 104 21 21 chr9 74924447 74924634 -49151538 - B2_Mm2 SINE B2 0 195 9 8 1156 366 23 0 0 chr9 74924719 74924762 -49151410 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1156 625 269 142 0 chr9 74924791 74924932 -49151240 - B3A SINE B2 -36 162 2 8 1156 745 82 0 0 chr9 74925728 74925826 -49150346 - B2_Mm2 SINE B2 -96 99 2 8 1156 254 241 289 0 chr9 74925887 74925970 -49150202 + PB1 SINE Alu 21 127 0 8 1156 286 321 50 88 chr9 74925981 74926162 -49150010 + ID_B1 SINE B4 6 179 -45 8 1156 431 228 0 11 chr9 74926083 74926176 -49149996 + PB1D7 SINE Alu 23 114 -6 8 1156 219 357 114 0 chr9 74926292 74926362 -49149810 - ID4 SINE ID 0 83 6 8 1156 608 182 54 9 chr9 74926848 74926959 -49149213 - B1_Mur1 SINE Alu -12 137 22 8 1156 885 28 0 0 chr9 74927080 74927189 -49148983 - B1_Mus1 SINE Alu 0 148 40 8 1156 929 168 6 0 chr9 74927197 74927376 -49148796 + GA-rich Low_complexity Low_complexity 1 180 0 8 1156 1420 65 15 56 chr9 74927386 74927582 -49148590 + B2_Mm2 SINE B2 1 188 -7 8 1156 229 82 20 20 chr9 74927666 74927716 -49148456 + (TTTTTG)n Simple_repeat Simple_repeat 4 53 0 9 1156 307 299 57 57 chr9 74927763 74927887 -49148285 + B1F SINE Alu 21 144 -5 9 1156 545 252 8 16 chr9 74927911 74928036 -49148136 + B1F SINE Alu 5 128 -21 9 1156 185 0 0 39 chr9 74928043 74928069 -49148103 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 9 1156 322 208 194 31 chr9 74928131 74928260 -49147912 - L1MA4 LINE L1 -272 6028 5879 9 1156 573 243 6 98 chr9 74928296 74928460 -49147712 - B1_Mur1 SINE Alu 0 149 1 9 1156 1013 191 90 5 chr9 74928723 74928912 -49147260 - B3 SINE B2 -10 206 2 9 1156 189 0 0 0 chr9 74928923 74928944 -49147228 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1156 222 176 0 0 chr9 74929008 74929059 -49147113 + (TATG)n Simple_repeat Simple_repeat 2 52 0 9 1156 950 231 15 25 chr9 74929060 74929264 -49146908 - B4 SINE B4 0 292 91 9 1156 870 190 0 77 chr9 74929283 74929465 -49146707 - B3 SINE B2 0 216 49 9 1156 290 237 237 0 chr9 74929467 74929543 -49146629 - PB1D7 SINE Alu -23 97 4 9 1156 653 274 47 56 chr9 74929779 74929992 -49146180 + ID_B1 SINE B4 2 212 -12 9 1156 395 0 0 163 chr9 74929995 74930846 -49145326 + (CTCTG)n Simple_repeat Simple_repeat 1 712 0 9 1156 674 162 6 0 chr9 74930848 74931027 -49145145 + CT-rich Low_complexity Low_complexity 1 180 0 9 1156 21 0 0 0 chr9 74931086 74931107 -49145065 + AT_rich Low_complexity Low_complexity 1 21 0 9 1156 299 303 33 33 chr9 74931107 74931199 -49144973 - B1F SINE Alu -57 92 1 9 1156 895 162 6 40 chr9 74931520 74931694 -49144478 - RMER1B Other Other -3 1063 896 9 1156 354 269 39 0 chr9 74932390 74932494 -49143678 + B1F SINE Alu 32 139 -10 9 1156 299 263 17 0 chr9 74932576 74932650 -49143522 + B1F SINE Alu 24 99 -21 9 1156 22 56 0 0 chr9 74932681 74932717 -49143455 + AT_rich Low_complexity Low_complexity 1 36 0 9 1156 293 231 16 11 chr9 74932717 74932797 -49143375 + ID_B1 SINE B4 70 148 -144 9 1156 453 317 40 32 chr9 74932931 74933055 -49143117 + PB1 SINE Alu 2 126 -1 9 1156 553 261 14 14 chr9 74933857 74933997 -49142175 - B1F SINE Alu -9 140 1 9 1156 1055 87 0 0 chr9 74934224 74934362 -49141810 + B1_Mus1 SINE Alu 11 148 0 9 1156 366 228 198 0 chr9 74934777 74934878 -49141294 - RSINE1 SINE B4 -43 122 2 9 1156 437 252 222 97 chr9 74934905 74935081 -49141091 - B3A SINE B2 0 198 1 9 1156 266 115 19 0 chr9 74935232 74935284 -49140888 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 9 1156 318 237 26 26 chr9 74935351 74935429 -49140743 + ID2 SINE ID 1 78 -5 9 1156 1761 31 0 0 chr9 74936256 74936447 -49139725 - B2_Mm1t SINE B2 -2 191 1 9 1156 417 300 9 0 chr9 74936770 74936880 -49139292 - PB1D10 SINE Alu 0 117 7 9 1156 271 375 36 0 chr9 74936793 74936905 -49139267 - ID_B1 SINE B4 -49 175 60 9 1156 342 242 31 31 chr9 74937657 74937785 -49138387 - Lx9 LINE L1 0 7644 7517 9 1156 429 70 0 0 chr9 74937787 74937844 -49138328 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1156 814 150 55 35 chr9 74937976 74938121 -49138051 + B1_Mur2 SINE Alu 2 149 0 9 1156 247 383 35 0 chr9 74938148 74938263 -49137909 + PB1 SINE Alu 5 123 -4 9 1156 5832 66 24 0 chr9 74938742 74939781 -49136391 - L1VL2 LINE L1 -2301 1314 246 9 1156 210 143 0 0 chr9 74939817 74939852 -49136320 + (TTC)n Simple_repeat Simple_repeat 2 36 0 9 1156 275 268 44 142 chr9 74940075 74940188 -49135984 + PB1 SINE Alu 26 127 0 9 1156 274 224 49 62 chr9 74940188 74940269 -49135903 + ID SINE ID 3 82 -142 9 1156 270 277 9 56 chr9 74940269 74940295 -49135877 + BC1_Mm scRNA scRNA 3 104 -48 9 1156 209 108 27 0 chr9 74940550 74940587 -49135585 + (TCC)n Simple_repeat Simple_repeat 2 39 0 9 1156 604 253 49 58 chr9 74940811 74940970 -49135202 + RSINE1 SINE B4 6 161 -4 9 1156 277 215 108 0 chr9 74941006 74941071 -49135101 - ID2 SINE ID -10 73 2 9 1156 965 122 13 39 chr9 74941186 74941339 -49134833 + B1_Mur3 SINE Alu 1 149 0 9 1156 227 130 0 42 chr9 74941341 74941389 -49134783 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 9 1156 314 245 150 17 chr9 74941901 74942096 -49134076 - L1MA8 LINE L1 -265 6035 5807 9 1156 306 0 0 0 chr9 74942106 74942140 -49134032 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 1156 461 255 0 41 chr9 74942143 74942241 -49133931 - PB1D10 SINE Alu -9 108 15 9 1156 563 259 7 10 chr9 74942314 74942484 -49133688 - L1MA8 LINE L1 -1112 5031 4862 9 1156 700 264 46 6 chr9 74943284 74943459 -49132713 + B3A SINE B2 1 182 -16 9 1156 6135 20 0 0 chr9 74943887 74944585 -49131587 - L1Md_A LINE L1 0 6582 5885 9 1156 330 345 142 41 chr9 74944882 74945100 -49131072 - L2b LINE L2 -218 3157 2918 9 1156 395 292 137 8 chr9 74945298 74945429 -49130743 - B1F SINE Alu -1 148 1 9 1156 302 303 121 9 chr9 74945439 74945568 -49130604 - MIRb SINE MIR -121 147 1 9 1156 638 278 48 76 chr9 74945880 74946090 -49130082 + B4 SINE B4 2 205 -87 9 1156 416 307 64 73 chr9 74946099 74946303 -49129869 + B3 SINE B2 1 202 -14 9 1156 335 257 110 73 chr9 74947073 74947182 -49128990 + PB1D7 SINE Alu 1 113 -7 9 1156 356 307 23 0 chr9 74947238 74947326 -49128846 + ID_B1 SINE B4 82 171 -53 9 1156 264 362 46 28 chr9 74947326 74947346 -49128826 + B1F1 SINE Alu 1 110 -39 9 1156 252 49 49 0 chr9 74947356 74947397 -49128775 - B1_Mur4 SINE Alu 0 150 108 9 1156 21 0 0 0 chr9 74947408 74947429 -49128743 + AT_rich Low_complexity Low_complexity 1 21 0 9 1156 1703 232 31 8 chr9 74947440 74947797 -49128375 + MTD LTR MaLR 1 365 -54 9 1156 1133 196 50 0 chr9 74948696 74948895 -49127277 + B3 SINE B2 8 216 0 9 1156 472 348 7 0 chr9 74948912 74949053 -49127119 + ID_B1 SINE B4 81 222 -2 9 1156 536 283 99 48 chr9 74949196 74949549 -49126623 - RMER20B LTR ERVK -215 412 42 9 1156 1368 93 6 0 chr9 74949774 74949957 -49126215 - B2_Mm1t SINE B2 -9 184 1 9 1156 302 319 102 13 chr9 74950055 74950285 -49125887 - L2a LINE L2 -1 3425 3117 9 1156 6327 82 35 5 chr9 74950299 74951173 -49124999 - Lx3_Mus LINE L1 -8 7001 6101 9 1156 189 0 0 0 chr9 74951189 74951210 -49124962 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 9 1156 1053 234 5 5 chr9 74951297 74951507 -49124665 + ID_B1 SINE B4 5 214 -10 9 1156 402 319 203 16 chr9 74952145 74952578 -49123594 - L2a LINE L2 -568 2851 2338 9 1156 988 148 0 7 chr9 74952646 74952796 -49123376 - B1_Mur4 SINE Alu 0 150 2 9 1156 1173 61 0 0 chr9 74953732 74953879 -49122293 + B1_Mus2 SINE Alu 1 147 0 9 1156 486 251 95 45 chr9 74954085 74954285 -49121887 - ID_B1 SINE B4 -11 213 4 9 1156 184 293 155 24 chr9 74954966 74955050 -49121122 + MIRb SINE MIR 171 265 -3 9 1156 274 266 47 0 chr9 74955171 74955235 -49120937 - L2c LINE L2 -38 3349 3283 9 1156 27 0 0 0 chr9 74956704 74956731 -49119441 + AT_rich Low_complexity Low_complexity 1 27 0 9 1156 349 171 0 136 chr9 74956731 74956812 -49119360 - ID4_ SINE ID 0 83 14 9 1156 1576 211 54 23 chr9 74958010 74958157 -49118015 - ORR1D1 LTR MaLR -9 365 210 9 1156 1006 93 154 0 chr9 74958157 74958319 -49117853 - B2_Mm2 SINE B2 -7 188 2 9 1156 1576 211 54 23 chr9 74958319 74958525 -49117647 - ORR1D1 LTR MaLR -165 209 1 9 1156 476 331 0 12 chr9 74959061 74959211 -49116961 - B1F1 SINE Alu -6 141 1 9 1156 7485 53 5 0 chr9 74959409 74960452 -49115720 - L1_Mus2 LINE L1 0 6566 5519 9 1156 6282 105 0 2 chr9 74960450 74961402 -49114770 + L1_Mus2 LINE L1 4555 5504 -379 9 1156 1078 314 31 21 chr9 74961641 74961927 -49114245 + B4A SINE B4 2 290 -2 9 1156 315 342 31 10 chr9 74961957 74962070 -49114102 + B1F2 SINE Alu 1 116 -33 9 1156 480 48 0 0 chr9 74962166 74962229 -49113943 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 9 1156 240 167 0 0 chr9 74962229 74962265 -49113907 + G-rich Low_complexity Low_complexity 83 118 0 9 1156 539 29 0 14 chr9 74962265 74962335 -49113837 + (GGAAA)n Simple_repeat Simple_repeat 1 69 0 9 1156 335 295 127 27 chr9 74962335 74962485 -49113687 + HAL1-3A_ME LINE L1 2284 2448 -410 9 1156 387 0 0 0 chr9 74962654 74962697 -49113475 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 9 1156 654 212 27 149 chr9 74962702 74962890 -49113282 - RSINE1 SINE B4 0 165 1 9 1156 240 271 11 86 chr9 74963565 74963658 -49112514 + MT2B LTR ERVL 155 240 -361 9 1156 556 243 0 0 chr9 74963586 74963693 -49112479 + PB1D10 SINE Alu 11 117 0 9 1156 230 95 24 0 chr9 74963726 74963768 -49112404 + (TTG)n Simple_repeat Simple_repeat 3 45 0 9 1156 308 240 123 57 chr9 74963776 74963882 -49112290 - ID_B1 SINE B4 -31 193 81 9 1156 1057 239 109 29 chr9 74964681 74965021 -49111151 + Lx8 LINE L1 6918 7284 -189 9 1156 332 273 136 0 chr9 74965230 74965318 -49110854 + B1F SINE Alu 1 100 -49 9 1156 741 273 0 0 chr9 74965323 74965462 -49110710 + RSINE1 SINE B4 3 141 -24 9 1156 673 249 52 6 chr9 74965654 74965828 -49110344 - MTD LTR MaLR -15 404 223 9 1156 502 256 80 0 chr9 74965839 74965964 -49110208 - ORR1D2-int LTR MaLR -1235 135 1 9 1156 268 103 0 0 chr9 74965966 74966005 -49110167 - ORR1D2 LTR MaLR -2 368 330 9 1156 280 209 196 89 chr9 74966101 74966269 -49109903 - B2_Mm2 SINE B2 -8 187 2 9 1156 433 295 107 0 chr9 74966423 74966545 -49109627 + ID_B1 SINE B4 83 217 -7 9 1156 232 238 0 23 chr9 74966545 74966631 -49109541 + GA-rich Low_complexity Low_complexity 1 84 0 1 1156 594 226 93 27 chr9 74967499 74967649 -49108523 - RSINE1 SINE B4 -3 162 3 1 1156 287 258 31 82 chr9 74967851 74967948 -49108224 - MIR SINE MIR -170 92 1 1 1156 600 279 36 31 chr9 74968072 74968268 -49107904 + B3A SINE B2 1 197 -1 1 1156 773 181 136 12 chr9 74969482 74969644 -49106528 - B3 SINE B2 -11 205 24 1 1156 333 0 0 0 chr9 74969657 74969694 -49106478 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 1156 398 206 9 81 chr9 74969721 74969753 -49106419 - ID_B1 SINE B4 0 224 194 1 1156 1445 69 16 0 chr9 74969753 74969941 -49106231 - B2_Mm2 SINE B2 -3 192 2 1 1156 398 206 9 81 chr9 74969941 74970019 -49106153 - ID_B1 SINE B4 -31 193 122 1 1156 721 269 5 30 chr9 74970215 74970414 -49105758 - B3A SINE B2 -4 194 1 1 1156 296 256 39 0 chr9 74970459 74970537 -49105635 - BC1_Mm scRNA scRNA -62 90 10 1 1156 260 320 115 44 chr9 74971017 74971200 -49104972 - MIRc SINE MIR -3 265 70 1 1156 204 343 31 0 chr9 74971711 74971858 -49104314 - MIRm SINE MIR -61 201 42 1 1156 612 40 0 0 chr9 74972584 74972659 -49103513 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 1 1156 423 0 0 0 chr9 74972659 74972705 -49103467 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1 1156 215 276 115 0 chr9 74972810 74972897 -49103275 - L2a LINE L2 -2 3424 3328 1 1156 1158 51 0 0 chr9 74972931 74973069 -49103103 + B1_Mus1 SINE Alu 1 138 -10 1 1156 279 0 0 0 chr9 74973069 74973100 -49103072 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 144 319 288 156 40 chr9 74973137 74973412 -49102760 + L1MC4 LINE L1 7727 8033 -9 1 1157 180 0 0 0 chr9 74973435 74973455 -49102717 + (CAAG)n Simple_repeat Simple_repeat 3 22 0 1 1157 398 202 33 22 chr9 74973743 74973834 -49102338 - B3 SINE B2 0 216 125 1 1157 414 289 101 0 chr9 74974116 74974265 -49101907 - RSINE1 SINE B4 0 165 2 1 1157 22 0 0 0 chr9 74974429 74974451 -49101721 + AT_rich Low_complexity Low_complexity 1 22 0 1 1157 247 333 122 27 chr9 74975456 74975604 -49100568 + ORR1E LTR MaLR 91 252 -107 1 1157 761 297 19 5 chr9 74975673 74975883 -49100289 - MTEa LTR MaLR 0 379 167 1 1157 6533 122 23 5 chr9 74975890 74976904 -49099268 - Lx4A LINE L1 -1 7057 6026 1 1157 844 251 70 0 chr9 74976904 74977119 -49099053 - Lx5 LINE L1 -704 6346 6117 1 1157 226 313 36 0 chr9 74977124 74977154 -49099018 + ID_B1 SINE B4 61 142 -78 1 1157 262 184 0 0 chr9 74977154 74977203 -49098969 + PB1D9 SINE Alu 13 61 -59 1 1157 220 211 26 0 chr9 74977229 74977305 -49098867 + GA-rich Low_complexity Low_complexity 2 79 0 1 1157 21 0 0 0 chr9 74977422 74977443 -49098729 + AT_rich Low_complexity Low_complexity 1 21 0 1 1157 21 36 0 0 chr9 74978426 74978454 -49097718 + AT_rich Low_complexity Low_complexity 1 28 0 1 1157 441 282 0 8 chr9 74978550 74978668 -49097504 + PB1D7 SINE Alu 3 119 -1 1 1157 466 205 50 64 chr9 74979361 74979502 -49096670 + L1_Mur3 LINE L1 2500 2638 -3242 1 1157 280 257 0 79 chr9 74979508 74979622 -49096550 + L1_Mur3 LINE L1 2759 2863 -3017 1 1157 1210 42 7 0 chr9 74980116 74980260 -49095912 + B1_Mus2 SINE Alu 2 146 -1 1 1157 234 81 0 0 chr9 74980261 74980298 -49095874 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 1 1157 457 183 29 9 chr9 74980298 74980403 -49095769 + Lx8 LINE L1 6906 7012 -461 1 1157 542 85 8 1 chr9 74980403 74980511 -49095661 + B1_Mus2 SINE Alu 42 149 0 1 1157 252 0 0 0 chr9 74980525 74980553 -49095619 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1157 1074 216 14 9 chr9 74981000 74981215 -49094957 - B3 SINE B2 0 216 1 1 1157 243 0 0 0 chr9 74981491 74981518 -49094654 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1157 462 88 0 0 chr9 74982006 74982074 -49094098 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1157 693 214 208 27 chr9 74982675 74982858 -49093314 + ID_B1 SINE B4 2 217 -7 1 1157 633 325 16 125 chr9 74982907 74982999 -49093173 + B4A SINE B4 5 81 -211 1 1157 634 136 182 8 chr9 74982999 74983125 -49093047 + B1_Mus1 SINE Alu 1 148 0 1 1157 633 325 16 125 chr9 74983125 74983352 -49092820 + B4A SINE B4 82 289 -3 1 1157 557 258 68 0 chr9 74983464 74983596 -49092576 + ID_B1 SINE B4 76 216 -8 1 1157 264 176 0 0 chr9 74985371 74985422 -49090750 - L1MA9 LINE L1 -376 5936 5886 1 1157 723 262 110 0 chr9 74986876 74987067 -49089105 + B3 SINE B2 1 212 -4 1 1157 27 0 0 0 chr9 74987590 74987617 -49088555 + AT_rich Low_complexity Low_complexity 1 27 0 1 1157 236 250 171 24 chr9 74987937 74988060 -49088112 + B1F1 SINE Alu 1 141 -8 1 1157 259 355 0 25 chr9 74988075 74988156 -49088016 + ID4 SINE ID 2 80 -3 1 1157 242 247 104 52 chr9 74988219 74988296 -49087876 - PB1 SINE Alu -2 125 45 1 1157 28 0 0 0 chr9 74988366 74988394 -49087778 + AT_rich Low_complexity Low_complexity 1 28 0 1 1157 528 180 150 86 chr9 74988813 74988953 -49087219 - B1_Mur4 SINE Alu -1 149 1 1 1157 207 0 0 0 chr9 74989120 74989143 -49087029 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1157 267 263 26 0 chr9 74989504 74989580 -49086592 + L1MB7 LINE L1 6053 6130 -54 1 1157 253 302 73 0 chr9 74989759 74989855 -49086317 - PB1D10 SINE Alu -12 105 3 1 1157 2214 199 84 142 chr9 74990288 74990908 -49085264 - RMER20B LTR ERVK -23 604 21 1 1157 772 176 0 44 chr9 74990923 74991060 -49085112 + B1_Mus2 SINE Alu 7 137 -10 1 1157 236 284 104 10 chr9 74991555 74991651 -49084521 - MIRb SINE MIR -64 204 100 1 1157 246 32 0 0 chr9 74992031 74992062 -49084110 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1157 266 221 256 13 chr9 74992137 74992215 -49083957 - B4 SINE B4 -191 101 5 1 1157 521 285 65 105 chr9 74992259 74992459 -49083713 - B3A SINE B2 -5 193 2 1 1157 219 88 0 0 chr9 74992472 74992506 -49083666 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1157 503 280 86 96 chr9 74992509 74992801 -49083371 - B4A SINE B4 -1 291 3 1 1157 302 247 281 0 chr9 74992888 74992977 -49083195 - PB1D7 SINE Alu -5 115 2 1 1157 212 0 0 35 chr9 74992984 74993013 -49083159 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1157 253 304 39 0 chr9 74993163 74993265 -49082907 - L1MB7 LINE L1 -184 6000 5895 1 1157 1827 213 14 3 chr9 74994005 74994354 -49081818 - ORR1D1 LTR MaLR -17 357 5 1 1157 23 0 0 0 chr9 74995594 74995617 -49080555 + AT_rich Low_complexity Low_complexity 1 23 0 1 1157 4570 89 41 15 chr9 74995862 74996515 -49079657 - Lx LINE L1 0 6654 5985 1 1157 218 264 66 53 chr9 74996855 74996931 -49079241 - ID_B1 SINE B4 -67 157 81 1 1157 790 168 280 6 chr9 74997329 74997497 -49078675 - B3 SINE B2 -1 215 2 1 1157 595 184 29 0 chr9 74997753 74997856 -49078316 - B3A SINE B2 -92 106 1 1 1157 1006 121 7 0 chr9 74997951 74998100 -49078072 - B1_Mur4 SINE Alu 0 150 1 1 1157 2723 154 164 11 chr9 74998615 74999145 -49077027 - RMER19C LTR ERVK 0 611 1 1 1157 514 269 50 0 chr9 74999372 74999513 -49076659 + B1F SINE Alu 2 149 0 1 1157 496 276 38 25 chr9 75000030 75000190 -49075982 - RSINE1 SINE B4 0 165 4 1 1157 196 295 32 64 chr9 75000439 75000533 -49075639 + MIRm SINE MIR 49 139 -137 2 1157 449 243 25 13 chr9 75000602 75000709 -49075463 + RSINE1 SINE B4 1 109 -183 3 1157 22 0 0 0 chr9 75000719 75000741 -49075431 + AT_rich Low_complexity Low_complexity 1 22 0 4 1157 291 28 0 0 chr9 75001768 75001804 -49074368 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1157 479 311 141 40 chr9 75001912 75002210 -49073962 + MER46C DNA MER2_type 3 330 -8 6 1157 1415 139 9 0 chr9 75002592 75002815 -49073357 - URR1B DNA MER1_type 0 225 1 7 1157 223 128 0 78 chr9 75003028 75003079 -49073093 + T-rich Low_complexity Low_complexity 1 47 0 8 1157 639 231 8 15 chr9 75003101 75003233 -49072939 - ID_B1 SINE B4 0 224 94 9 1157 861 260 20 3 chr9 75003505 75003825 -49072347 - L1MA4 LINE L1 -370 5930 5588 1 1157 203 352 182 20 chr9 75004198 75004401 -49071771 - MIR SINE MIR -21 241 6 1 1157 352 337 119 14 chr9 75005615 75005892 -49070280 - L2 LINE L2 -958 2461 2156 1 1157 318 50 0 0 chr9 75005950 75005990 -49070182 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1157 515 298 117 8 chr9 75006017 75006244 -49069928 - B4 SINE B4 -3 289 4 1 1157 517 290 0 99 chr9 75006262 75006423 -49069749 - ID_B1 SINE B4 0 224 80 1 1157 399 262 67 10 chr9 75006419 75006523 -49069649 - PB1D10 SINE Alu -6 111 2 1 1157 252 333 13 0 chr9 75007073 75007151 -49069021 - ID2 SINE ID -3 80 2 1 1157 470 289 70 8 chr9 75007394 75007523 -49068649 + B1_Mus1 SINE Alu 9 145 -3 1 1157 262 281 86 55 chr9 75008058 75008084 -49068088 - B4A SINE B4 -73 219 88 1 1157 295 327 29 10 chr9 75008084 75008186 -49067986 - B1F1 SINE Alu -43 106 3 2 1157 504 0 0 0 chr9 75009841 75009897 -49066275 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1157 310 340 25 31 chr9 75009956 75010117 -49066055 - L1MC4a LINE L1 -1990 5892 5733 2 1157 23 0 0 0 chr9 75010390 75010413 -49065759 + AT_rich Low_complexity Low_complexity 1 23 0 2 1157 712 231 96 20 chr9 75010425 75010624 -49065548 + B3 SINE B2 3 216 0 2 1157 1492 184 99 45 chr9 75011030 75011383 -49064789 - ORR1D1 LTR MaLR 0 374 3 2 1157 604 255 49 71 chr9 75012624 75012841 -49063331 + B3A SINE B2 2 212 -4 2 1157 648 249 91 75 chr9 75012999 75013186 -49062986 + B3A SINE B2 3 192 -6 2 1157 502 260 40 0 chr9 75013195 75013295 -49062877 + B3 SINE B2 46 149 -67 2 1157 370 276 0 0 chr9 75013368 75013444 -49062728 - ID4 SINE ID 0 83 8 2 1157 6822 36 1 1 chr9 75015353 75016168 -49060004 - L1Md_F2 LINE L1 -7 6575 5761 3 1157 28 29 0 0 chr9 75017353 75017388 -49058784 + AT_rich Low_complexity Low_complexity 1 35 0 3 1157 538 242 73 13 chr9 75017388 75017539 -49058633 - MLT1D LTR MaLR -336 169 10 3 1157 724 287 62 62 chr9 75017719 75018009 -49058163 - B4A SINE B4 -1 291 2 3 1157 432 265 35 97 chr9 75018173 75018286 -49057886 - RSINE1 SINE B4 -1 164 59 3 1157 372 178 0 0 chr9 75018381 75018454 -49057718 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1157 759 201 8 0 chr9 75018638 75018772 -49057400 + B1_Mur1 SINE Alu 2 136 -13 3 1157 180 0 0 0 chr9 75018772 75018792 -49057380 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1157 317 367 0 0 chr9 75020168 75020266 -49055906 + PB1D7 SINE Alu 9 106 -14 3 1157 325 316 20 10 chr9 75020267 75020366 -49055806 - PB1D10 SINE Alu -17 100 1 3 1157 1233 192 14 0 chr9 75020449 75020662 -49055510 - B3 SINE B2 0 216 1 4 1157 597 173 73 99 chr9 75020698 75020890 -49055282 + B2_Mm2 SINE B2 1 187 -8 4 1157 324 0 0 0 chr9 75021149 75021185 -49054987 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1157 656 160 9 0 chr9 75021187 75021293 -49054879 - PB1D9 SINE Alu -13 107 1 4 1157 623 178 109 8 chr9 75021399 75021518 -49054654 + B1_Mur1 SINE Alu 17 147 -2 4 1157 344 243 43 120 chr9 75021423 75021540 -49054632 + B4 SINE B4 128 235 -57 4 1157 321 263 78 4 chr9 75021526 75021640 -49054532 + B1F1 SINE Alu 5 149 0 4 1157 1588 147 13 105 chr9 75022264 75022569 -49053603 - ORR1B1 LTR MaLR 0 394 118 4 1157 402 21 0 0 chr9 75022570 75022617 -49053555 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 4 1157 780 224 8 0 chr9 75022640 75022774 -49053398 - B1_Mur2 SINE Alu -9 140 6 4 1157 310 230 10 112 chr9 75022695 75022793 -49053379 - MT2B LTR ERVL -362 239 152 5 1157 1029 249 67 7 chr9 75022961 75023244 -49052928 + Lx8 LINE L1 7001 7300 -173 5 1157 419 292 121 34 chr9 75023376 75023525 -49052647 + B3 SINE B2 1 162 -54 5 1157 1044 240 213 14 chr9 75023613 75023960 -49052212 + MTD LTR MaLR 3 418 -1 5 1157 247 390 122 26 chr9 75023971 75024200 -49051972 - L2c LINE L2 -12 3375 3125 5 1157 265 269 0 0 chr9 75024789 75024841 -49051331 - PB1D10 SINE Alu -31 86 35 5 1157 354 268 32 25 chr9 75024879 75025036 -49051136 - L1MA4 LINE L1 -22 6278 6121 5 1157 1114 221 132 30 chr9 75025340 75025643 -49050529 + MTD LTR MaLR 70 403 -16 5 1157 23 68 0 0 chr9 75025807 75025851 -49050321 + AT_rich Low_complexity Low_complexity 1 44 0 5 1157 586 209 47 207 chr9 75025856 75026261 -49049911 - RLTR15 LTR ERVK -19 340 1 5 1157 1006 227 27 5 chr9 75026262 75026448 -49049724 - B3 SINE B2 -12 204 15 6 1157 555 348 14 0 chr9 75026792 75026933 -49049239 + RSINE1 SINE B4 21 163 -2 6 1157 293 245 71 97 chr9 75027110 75027223 -49048949 + PB1D10 SINE Alu 7 116 -1 6 1157 21 0 0 0 chr9 75027494 75027515 -49048657 + AT_rich Low_complexity Low_complexity 1 21 0 6 1157 192 135 0 0 chr9 75028000 75028037 -49048135 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1157 398 305 42 56 chr9 75028183 75028398 -49047774 - L1MC5 LINE L1 -26 7935 7724 6 1157 950 239 16 11 chr9 75029267 75029457 -49046715 + ID_B1 SINE B4 15 205 -19 6 1157 276 321 12 0 chr9 75029967 75030048 -49046124 - ID4_ SINE ID -1 82 1 6 1157 1386 71 16 5 chr9 75030391 75030576 -49045596 - B2_Mm2 SINE B2 -7 188 2 6 1157 510 280 23 8 chr9 75031223 75031356 -49044816 + RSINE1 SINE B4 3 137 -28 6 1157 1120 79 0 0 chr9 75032604 75032743 -49043429 - B1_Mus1 SINE Alu -9 139 1 7 1157 461 274 48 43 chr9 75033041 75033228 -49042944 + MER5A DNA MER1_type 2 189 0 7 1157 279 0 0 0 chr9 75034533 75034564 -49041608 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1157 444 353 48 14 chr9 75035487 75035731 -49040441 - B4A SINE B4 0 292 32 7 1157 395 212 119 101 chr9 75036056 75036224 -49039948 - RLTR13D3 LTR ERVK 0 1114 944 7 1157 270 79 0 0 chr9 75036473 75036511 -49039661 - B2_Mm2 SINE B2 -157 38 1 7 1157 697 251 71 30 chr9 75037159 75037356 -49038816 + ID_B1 SINE B4 1 205 -19 7 1157 387 0 0 0 chr9 75037464 75037507 -49038665 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1157 496 283 62 0 chr9 75037508 75037621 -49038551 - RSINE1 SINE B4 -28 137 18 7 1157 315 311 101 6 chr9 75038718 75038886 -49037286 - L2 LINE L2 -523 2896 2713 7 1157 430 247 0 0 chr9 75038899 75038976 -49037196 + ID_B1 SINE B4 22 98 -126 8 1157 1128 89 0 0 chr9 75039579 75039725 -49036447 - B1_Mus1 SINE Alu 0 148 3 8 1157 519 17 0 0 chr9 75041230 75041290 -49034882 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1157 195 42 0 0 chr9 75041487 75041511 -49034661 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 8 1157 22 0 0 0 chr9 75044599 75044621 -49031551 + AT_rich Low_complexity Low_complexity 1 22 0 8 1157 235 318 165 0 chr9 75044693 75044778 -49031394 - PB1D10 SINE Alu -12 105 7 8 1157 592 224 17 0 chr9 75044848 75044964 -49031208 - PB1D9 SINE Alu -2 118 1 8 1157 538 301 30 26 chr9 75045783 75046017 -49030155 + MIR SINE MIR 2 236 -32 8 1157 181 312 39 0 chr9 75046232 75046309 -49029863 - L2a LINE L2 -6 3420 3341 8 1157 181 398 83 21 chr9 75046523 75046764 -49029408 + L2c LINE L2 3070 3325 -62 8 1157 239 356 33 25 chr9 75046847 75046968 -49029204 + MARNA DNA Mariner 463 584 -2 9 1157 560 333 55 22 chr9 75047016 75047289 -49028883 + B4A SINE B4 1 282 -10 9 1157 225 0 0 0 chr9 75048296 75048321 -49027851 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1157 299 333 81 29 chr9 75049344 75049480 -49026692 + RSINE1 SINE B4 23 165 0 9 1157 329 310 54 90 chr9 75049831 75050054 -49026118 - ID_B1 SINE B4 -8 216 2 9 1157 761 300 186 30 chr9 75050582 75051341 -49024831 - L2a LINE L2 -209 3217 2341 9 1157 338 253 46 40 chr9 75051839 75052003 -49024169 - MTEb LTR MaLR 0 379 207 9 1157 482 205 53 6 chr9 75052205 75052311 -49023861 + B1F2 SINE Alu 1 139 -10 9 1157 498 33 0 0 chr9 75052312 75052372 -49023800 + (TAGG)n Simple_repeat Simple_repeat 2 61 0 9 1157 522 0 0 0 chr9 75052372 75052429 -49023743 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 9 1157 212 0 0 35 chr9 75052609 75052638 -49023534 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1157 1147 50 7 0 chr9 75052638 75052777 -49023395 - B1_Mus1 SINE Alu -8 140 1 1 1157 180 0 0 0 chr9 75052866 75052886 -49023286 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1157 988 142 37 0 chr9 75052934 75053126 -49023046 + URR1B DNA MER1_type 5 221 -4 1 1157 1397 64 5 16 chr9 75053144 75053334 -49022838 - B2_Mm2 SINE B2 -7 188 1 1 1157 1872 251 61 28 chr9 75053490 75053668 -49022504 + Lx6 LINE L1 6932 7121 -339 1 1157 480 18 0 0 chr9 75053668 75053725 -49022447 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1157 1872 251 61 28 chr9 75053725 75054054 -49022118 + Lx6 LINE L1 7122 7455 -5 1 1157 430 247 0 0 chr9 75055721 75055810 -49020362 + ID_B1 SINE B4 117 205 -19 1 1157 322 154 13 13 chr9 75055816 75055895 -49020277 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 1 1157 194 163 0 39 chr9 75055954 75056005 -49020167 + (TATG)n Simple_repeat Simple_repeat 4 52 0 1 1157 1007 277 46 23 chr9 75056024 75056283 -49019889 - B4 SINE B4 -4 288 24 1 1157 1397 80 11 0 chr9 75057461 75057649 -49018523 + B2_Mm1t SINE B2 1 190 -3 1 1157 340 224 53 0 chr9 75057680 75057756 -49018416 + PB1D9 SINE Alu 41 120 0 1 1157 252 226 0 0 chr9 75060464 75060526 -49015646 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1157 659 291 20 64 chr9 75061241 75061443 -49014729 + B3 SINE B2 1 193 -23 1 1157 274 235 159 14 chr9 75061574 75061643 -49014529 - PB1D10 SINE Alu -37 80 2 1 1157 1037 142 0 0 chr9 75061771 75061919 -49014253 + B1_Mur4 SINE Alu 3 150 0 1 1157 529 252 130 0 chr9 75062073 75062196 -49013976 - ID_B1 SINE B4 -4 220 82 1 1157 259 267 129 0 chr9 75063190 75063291 -49012881 - L2a LINE L2 -8 3418 3305 1 1157 609 229 31 44 chr9 75063362 75063522 -49012650 + RSINE1 SINE B4 2 159 -6 1 1157 932 35 9 0 chr9 75063717 75063833 -49012339 - B1_Mus1 SINE Alu -2 146 30 1 1157 287 197 58 43 chr9 75064454 75064523 -49011649 + MER3 DNA MER1_type 140 209 0 1 1157 290 327 35 52 chr9 75064548 75064664 -49011508 + PB1D10 SINE Alu 2 115 -2 1 1157 305 98 78 0 chr9 75064676 75064727 -49011445 + B1F SINE Alu 85 139 -10 1 1157 21 57 0 0 chr9 75064854 75064889 -49011283 + AT_rich Low_complexity Low_complexity 1 35 0 1 1157 33 73 0 0 chr9 75065525 75065593 -49010579 + AT_rich Low_complexity Low_complexity 1 68 0 1 1157 221 342 14 14 chr9 75067284 75067358 -49008814 + MIR3 SINE MIR 106 179 -29 1 1157 353 253 53 0 chr9 75067619 75067694 -49008478 - ID4_ SINE ID -2 81 3 1 1157 390 42 0 0 chr9 75069080 75069128 -49007044 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1157 324 0 0 0 chr9 75069128 75069163 -49007009 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1157 22 35 0 0 chr9 75070546 75070575 -49005597 + AT_rich Low_complexity Low_complexity 1 29 0 1 1157 389 294 338 14 chr9 75073171 75073381 -49002791 - B4A SINE B4 -12 280 3 1 1157 255 267 99 90 chr9 75073574 75073615 -49002557 + MT2B2 LTR ERVL 116 227 -357 1 1157 416 200 0 0 chr9 75073615 75073685 -49002487 + B1_Mus2 SINE Alu 1 70 -77 1 1157 255 125 0 0 chr9 75073687 75073727 -49002445 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1157 653 66 0 11 chr9 75073738 75073830 -49002342 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 1 1157 1140 221 193 11 chr9 75073890 75074237 -49001935 + MTD LTR MaLR 1 410 -9 1 1157 1338 245 92 0 chr9 75074242 75074556 -49001616 - ORR1D2 LTR MaLR -25 345 3 1 1157 339 25 0 0 chr9 75074577 75074617 -49001555 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1157 522 316 135 65 chr9 75074769 75075338 -49000834 + L1M4b LINE L1 413 1021 -6313 1 1157 395 251 159 60 chr9 75075885 75076067 -49000105 - RMER30 DNA MER1_type -1 201 2 1 1157 303 308 98 82 chr9 75076191 75076506 -48999666 + ORR1E LTR MaLR 35 354 -5 1 1157 644 179 8 8 chr9 75076504 75076632 -48999540 + B1_Mur2 SINE Alu 17 144 -5 1 1157 383 200 43 0 chr9 75076693 75076763 -48999409 - PB1D7 SINE Alu -47 73 1 1 1157 212 277 119 54 chr9 75076874 75076925 -48999247 - B2_Mm1t SINE B2 -13 180 2 1 1157 574 197 86 0 chr9 75076925 75077042 -48999130 - RSINE1 SINE B4 -36 129 3 1 1157 445 293 79 28 chr9 75077042 75077204 -48998968 + L1M4b LINE L1 3860 4027 -2979 1 1157 848 86 125 0 chr9 75077204 75077332 -48998840 + B1_Mus1 SINE Alu 5 148 0 1 1157 445 293 79 28 chr9 75077332 75077460 -48998712 + L1M4b LINE L1 4028 4164 -2842 1 1157 327 270 149 31 chr9 75077652 75077847 -48998325 + L1M4b LINE L1 4251 4468 -2538 1 1157 693 148 116 66 chr9 75077854 75078035 -48998137 + B2_Mm2 SINE B2 1 190 -5 1 1157 186 43 0 0 chr9 75078049 75078072 -48998100 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1157 29 28 0 0 chr9 75078180 75078216 -48997956 + AT_rich Low_complexity Low_complexity 1 36 0 1 1157 261 0 0 0 chr9 75078277 75078306 -48997866 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1157 263 354 53 9 chr9 75078314 75078428 -48997744 + B1_Mus2 SINE Alu 2 120 -27 1 1157 577 246 81 68 chr9 75078796 75079018 -48997154 + B4A SINE B4 2 226 -66 1 1157 1204 137 16 21 chr9 75079022 75079216 -48996956 + B2_Mm2 SINE B2 2 194 -1 1 1157 630 0 0 0 chr9 75080655 75080725 -48995447 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1157 616 200 35 49 chr9 75080787 75080929 -48995243 - B1_Mur1 SINE Alu 0 149 10 1 1157 463 302 22 0 chr9 75080931 75081070 -48995102 - B1F1 SINE Alu -7 142 1 1 1157 373 190 12 60 chr9 75081244 75081328 -48994844 - BC1_Mm scRNA scRNA -70 82 3 1 1157 735 215 8 0 chr9 75081530 75081660 -48994512 + B1F1 SINE Alu 12 142 -7 1 1157 342 244 79 93 chr9 75081540 75081680 -48994492 + B4A SINE B4 107 244 -48 1 1157 918 181 5 46 chr9 75082632 75082829 -48993343 - RMER17C LTR ERVK 0 410 222 1 1157 614 194 15 40 chr9 75082803 75082971 -48993201 - RMER17C LTR ERVK -582 324 1 1 1157 1519 268 41 82 chr9 75085631 75086167 -48990005 - Lx6 LINE L1 0 7460 6947 1 1157 184 231 38 9 chr9 75086356 75086461 -48989711 + CT-rich Low_complexity Low_complexity 1 108 0 1 1157 303 343 93 34 chr9 75087018 75087223 -48988949 + B4 SINE B4 2 218 -74 1 1157 779 270 2 29 chr9 75087260 75087475 -48988697 - B3A SINE B2 -8 208 1 1 1157 555 29 0 0 chr9 75087736 75087805 -48988367 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1157 1787 187 39 70 chr9 75087854 75088240 -48987932 - ORR1D1 LTR MaLR 0 374 1 1 1157 1971 211 13 13 chr9 75088343 75088718 -48987454 + MTD LTR MaLR 13 387 -32 1 1157 405 0 0 0 chr9 75088718 75088763 -48987409 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1 1157 656 282 13 0 chr9 75089088 75089237 -48986935 - RSINE1 SINE B4 -14 151 1 1 1157 387 254 132 60 chr9 75089243 75089394 -48986778 - MLT1B LTR MaLR -219 171 10 1 1157 458 198 44 0 chr9 75089467 75089558 -48986614 + PB1D7 SINE Alu 21 115 -5 1 1157 565 315 42 14 chr9 75089645 75089861 -48986311 - ID_B1 SINE B4 -2 222 1 1 1157 498 230 281 38 chr9 75090208 75090443 -48985729 - B4A SINE B4 0 292 1 1 1157 430 236 55 28 chr9 75092277 75092386 -48983786 + PB1D10 SINE Alu 1 112 -5 1 1157 874 235 15 29 chr9 75092393 75092599 -48983573 + B3 SINE B2 1 203 -13 1 1157 332 252 90 36 chr9 75093289 75093400 -48982772 + MT2B LTR ERVL 162 278 -323 1 1157 728 61 20 0 chr9 75093328 75093427 -48982745 + B1_Mus2 SINE Alu 47 147 0 1 1157 380 265 86 57 chr9 75093487 75093627 -48982545 - MLT1A1 LTR MaLR 0 408 265 1 1157 290 350 48 12 chr9 75094646 75094811 -48981361 - MIRc SINE MIR 0 268 98 1 1157 187 341 82 22 chr9 75095598 75095733 -48980439 + MIRb SINE MIR 91 233 -35 1 1157 349 319 125 28 chr9 75095904 75096120 -48980052 + MER68 LTR ERVL 1 237 -326 1 1157 351 347 69 6 chr9 75096215 75096389 -48979783 + MER68 LTR ERVL 372 556 -7 1 1157 360 0 0 0 chr9 75096524 75096564 -48979608 + (CATA)n Simple_repeat Simple_repeat 4 43 0 1 1157 1089 52 17 17 chr9 75096589 75096766 -48979406 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 1 1157 303 85 0 0 chr9 75096766 75096813 -48979359 + (CATA)n Simple_repeat Simple_repeat 1 47 0 1 1157 942 107 25 25 chr9 75096805 75097160 -48979012 + (TAGA)n Simple_repeat Simple_repeat 1 355 0 1 1157 210 186 23 0 chr9 75097176 75097219 -48978953 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1157 885 251 91 0 chr9 75097225 75097424 -48978748 - ID_B1 SINE B4 0 224 8 1 1157 1204 134 5 11 chr9 75098345 75098533 -48977639 + B2_Mm2 SINE B2 1 187 -8 1 1157 947 120 0 8 chr9 75099459 75099593 -48976579 + B1_Mus1 SINE Alu 15 147 -1 1 1157 568 329 0 7 chr9 75099680 75099824 -48976348 + B1F2 SINE Alu 2 144 -5 1 1157 390 269 117 0 chr9 75099855 75100000 -48976172 + ID_B1 SINE B4 2 163 -61 1 1157 253 229 21 0 chr9 75100168 75100216 -48975956 - PB1D10 SINE Alu -6 111 63 1 1157 685 232 52 22 chr9 75100490 75100689 -48975483 + B3 SINE B2 6 210 -6 1 1157 3189 65 5 0 chr9 75101233 75101631 -48974541 - MTB LTR MaLR 0 400 1 1 1157 228 282 13 0 chr9 75102557 75102635 -48973537 + CT-rich Low_complexity Low_complexity 3 81 0 1 1157 1077 217 32 5 chr9 75103020 75103238 -48972934 - ID_B1 SINE B4 0 224 1 1 1157 291 191 0 0 chr9 75103932 75103995 -48972177 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1157 317 243 77 10 chr9 75104028 75104132 -48972040 - L2a LINE L2 -1 3425 3315 1 1158 853 226 9 42 chr9 75104506 75104723 -48971449 - B3 SINE B2 -5 211 2 1 1158 478 330 122 6 chr9 75106228 75106455 -48969717 + B4A SINE B4 1 281 -11 2 1158 764 255 5 72 chr9 75107569 75107776 -48968396 - B3A SINE B2 0 198 6 2 1158 396 216 0 0 chr9 75107903 75108005 -48968167 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 1158 276 293 112 25 chr9 75109198 75109359 -48966813 + Charlie8 DNA MER1_type 117 291 -2137 2 1158 450 0 0 0 chr9 75109893 75109943 -48966229 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1158 912 219 118 70 chr9 75111091 75111141 -48965031 - RMER10A LTR ERVL -26 416 373 2 1158 1845 165 85 40 chr9 75111141 75111564 -48964608 - RMER10A LTR ERVL 0 442 1 2 1158 932 219 118 70 chr9 75111564 75111896 -48964276 - RMER10A LTR ERVL -70 372 16 2 1158 203 75 0 91 chr9 75112345 75112389 -48963783 + C-rich Low_complexity Low_complexity 2 41 0 2 1158 1430 29 0 6 chr9 75112511 75112687 -48963485 + (TCTCCC)n Simple_repeat Simple_repeat 6 180 0 2 1158 1284 185 0 9 chr9 75113494 75113718 -48962454 + URR1B DNA MER1_type 1 222 -3 2 1158 487 259 74 0 chr9 75114078 75114186 -48961986 + B4 SINE B4 1 116 -176 2 1158 393 128 244 49 chr9 75114532 75114614 -48961558 - RMER12B LTR ERVK -11 1393 1296 2 1158 225 242 0 0 chr9 75115036 75115098 -48961074 - L1M3 LINE L1 -340 5828 5767 2 1158 988 254 45 45 chr9 75115410 75115502 -48960670 + B4A SINE B4 1 91 -201 2 1158 185 0 40 0 chr9 75115502 75115527 -48960645 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1158 988 254 45 45 chr9 75115527 75115726 -48960446 + B4A SINE B4 92 292 0 2 1158 668 24 24 0 chr9 75115729 75115814 -48960358 + (GAAA)n Simple_repeat Simple_repeat 3 89 0 2 1158 369 95 0 0 chr9 75115815 75115878 -48960294 + (CAGG)n Simple_repeat Simple_repeat 2 64 0 2 1158 374 159 147 74 chr9 75116485 75116580 -48959592 + B1_Mur1 SINE Alu 40 141 -8 2 1158 709 301 59 37 chr9 75116587 75116859 -48959313 + B4 SINE B4 1 278 -14 2 1158 205 255 0 18 chr9 75116884 75116940 -48959232 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1158 766 261 11 16 chr9 75117807 75117990 -48958182 - B3A SINE B2 -16 182 1 2 1158 837 202 73 160 chr9 75118168 75118523 -48957649 - ORR1D2 LTR MaLR -2 365 45 2 1158 893 119 104 0 chr9 75118525 75118659 -48957513 + B1_Mus1 SINE Alu 1 148 0 2 1158 213 200 0 0 chr9 75118659 75118704 -48957468 + GA-rich Low_complexity Low_complexity 2 46 0 2 1158 418 274 90 101 chr9 75119912 75120200 -48955972 - ORR1E LTR MaLR -8 351 67 2 1158 266 359 34 17 chr9 75120226 75120345 -48955827 - MLT1A0 LTR MaLR -237 128 8 2 1158 251 316 103 21 chr9 75121945 75122042 -48954130 - MER58B DNA MER1_type -13 328 224 2 1158 241 317 0 24 chr9 75122051 75122135 -48954037 - MLT1A1 LTR MaLR -12 396 315 2 1158 542 264 33 0 chr9 75122264 75122385 -48953787 + B1F1 SINE Alu 4 128 -21 2 1158 626 230 176 37 chr9 75122401 75122645 -48953527 + B4A SINE B4 15 292 0 2 1158 861 185 0 0 chr9 75123868 75124041 -48952131 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 1158 464 303 28 62 chr9 75124094 75124270 -48951902 - B4A SINE B4 -63 229 60 2 1158 343 292 34 0 chr9 75125234 75125323 -48950849 + MIRb SINE MIR 65 156 -112 2 1158 322 330 0 22 chr9 75126339 75126522 -48949650 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1158 366 187 37 18 chr9 75127255 75127364 -48948808 + CT-rich Low_complexity Low_complexity 4 114 0 2 1158 630 260 110 0 chr9 75127377 75127577 -48948595 - ID_B1 SINE B4 0 224 3 2 1158 236 348 26 66 chr9 75127598 75127749 -48948423 - LTR33B LTR ERVL -355 148 4 2 1158 535 276 62 24 chr9 75128699 75128865 -48947307 + B3A SINE B2 2 169 -47 2 1158 357 24 0 0 chr9 75128917 75128959 -48947213 + (CAGA)n Simple_repeat Simple_repeat 4 45 0 2 1158 226 301 0 40 chr9 75130572 75130648 -48945524 + ID4_ SINE ID 2 74 -9 2 1158 538 137 0 1 chr9 75130673 75130761 -48945411 - B3 SINE B2 -104 91 5 2 1158 563 274 71 35 chr9 75132080 75132250 -48943922 + B4 SINE B4 43 218 -74 2 1158 770 236 44 33 chr9 75132258 75132438 -48943734 + B3A SINE B2 1 182 -16 2 1158 476 254 6 0 chr9 75132438 75132615 -48943557 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1158 687 299 47 9 chr9 75133031 75133244 -48942928 + ID_B1 SINE B4 2 222 -2 2 1158 756 181 85 26 chr9 75133255 75133408 -48942764 + B3A SINE B2 5 166 -32 2 1158 2982 23 6 9 chr9 75133847 75134196 -48941976 - L1Md_F2 LINE L1 -2 6580 6233 2 1158 1298 83 0 22 chr9 75136069 75136254 -48939918 - B2_Mm2 SINE B2 -3 192 12 2 1158 21 36 0 0 chr9 75136266 75136294 -48939878 + AT_rich Low_complexity Low_complexity 1 28 0 2 1158 1720 81 0 4 chr9 75136302 75136537 -48939635 + L1_Mus4 LINE L1 6401 6634 -2 2 1158 392 226 173 0 chr9 75137224 75137357 -48938815 + ID_B1 SINE B4 66 221 -3 2 1158 198 0 0 0 chr9 75137368 75137390 -48938782 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1158 1699 210 96 23 chr9 75137889 75138274 -48937898 - MTD LTR MaLR -2 417 5 2 1158 342 0 0 0 chr9 75138276 75138314 -48937858 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1158 423 0 0 0 chr9 75138314 75138360 -48937812 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1158 403 167 191 0 chr9 75138360 75138444 -48937728 - RSINE1 SINE B4 -51 114 15 2 1158 429 186 46 11 chr9 75139485 75139659 -48936513 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2 1158 270 315 0 105 chr9 75139800 75139924 -48936248 - MLT1F2 LTR MaLR 0 560 450 2 1158 772 172 22 0 chr9 75140456 75140590 -48935582 + B1_Mur3 SINE Alu 3 139 -10 2 1158 491 288 98 0 chr9 75140779 75140911 -48935261 - ORR1D2 LTR MaLR -219 151 7 2 1158 1100 174 14 42 chr9 75141073 75141289 -48934883 - B3 SINE B2 -6 210 1 2 1158 747 218 0 0 chr9 75142248 75142381 -48933791 + B3 SINE B2 4 136 -80 2 1158 470 46 15 0 chr9 75142381 75142446 -48933726 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1158 485 219 18 62 chr9 75142829 75142941 -48933231 - PB1D9 SINE Alu -9 111 5 2 1158 1043 248 5 27 chr9 75144017 75144241 -48931931 - ID_B1 SINE B4 -4 220 2 2 1158 1185 247 68 47 chr9 75144736 75145101 -48931071 - MTEa LTR MaLR -1 378 6 2 1158 226 188 0 20 chr9 75146506 75146555 -48929617 + ZP3AR Satellite Satellite 38 85 -127 2 1158 379 169 99 0 chr9 75146511 75146582 -48929590 + ID SINE ID 1 78 -146 2 1158 480 223 140 11 chr9 75147073 75147259 -48928913 - L1MEf LINE L1 -3717 2429 2220 2 1158 812 198 112 117 chr9 75147374 75147513 -48928659 + URR1A DNA MER1_type 1 146 -80 2 1158 656 199 256 6 chr9 75147513 75147685 -48928487 - B3 SINE B2 0 216 2 2 1158 812 198 112 117 chr9 75147685 75147768 -48928404 + URR1A DNA MER1_type 147 222 -4 2 1158 501 170 164 39 chr9 75147772 75147876 -48928296 - B3A SINE B2 -80 118 2 2 1158 385 191 15 9 chr9 75147878 75148003 -48928169 - L1MEf LINE L1 -4023 2219 2091 2 1158 541 288 36 42 chr9 75148005 75148197 -48927975 - B3A SINE B2 0 198 8 2 1158 315 163 158 30 chr9 75148216 75148271 -48927901 - L1MEf LINE L1 -4142 2100 2046 2 1158 189 0 0 0 chr9 75148271 75148292 -48927880 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1158 315 163 158 30 chr9 75148292 75148337 -48927835 - L1MEf LINE L1 -4197 2045 1987 2 1158 769 253 0 7 chr9 75149499 75149517 -48926655 - RSINE1 SINE B4 -3 162 145 2 1158 192 77 0 0 chr9 75149517 75149543 -48926629 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1158 769 253 0 7 chr9 75149543 75149679 -48926493 - RSINE1 SINE B4 -21 144 9 2 1158 270 253 0 51 chr9 75149610 75149689 -48926483 - B3A SINE B2 -122 76 2 2 1158 681 252 142 35 chr9 75149858 75150203 -48925969 + Charlie1a DNA MER1_type 1060 1441 -14 2 1158 471 308 10 0 chr9 75150213 75150317 -48925855 + B3A SINE B2 58 162 -36 2 1158 21 0 0 0 chr9 75150317 75150338 -48925834 + AT_rich Low_complexity Low_complexity 1 21 0 2 1158 844 106 49 0 chr9 75150348 75150471 -48925701 - B1_Mus2 SINE Alu -2 145 17 2 1158 401 248 83 110 chr9 75150351 75150496 -48925676 - B4 SINE B4 -71 221 81 2 1158 1233 60 84 0 chr9 75150563 75150729 -48925443 + B2_Mm2 SINE B2 2 181 -14 2 1158 926 112 14 7 chr9 75150776 75150920 -48925252 + B2_Mm1t SINE B2 48 192 -1 2 1158 732 180 7 72 chr9 75150996 75151134 -48925038 + RSINE1 SINE B4 5 133 -32 2 1158 288 0 0 0 chr9 75151137 75151169 -48925003 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1158 282 87 0 0 chr9 75151183 75151229 -48924943 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2 1158 1127 85 26 0 chr9 75151229 75151382 -48924790 - B2_Mm2 SINE B2 -38 157 1 2 1158 437 303 0 0 chr9 75152404 75152513 -48923659 + PB1D7 SINE Alu 1 109 -11 2 1158 579 29 0 0 chr9 75152514 75152583 -48923589 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 2 1158 218 175 281 0 chr9 75152730 75152787 -48923385 + ID4 SINE ID 5 77 -6 2 1158 22 35 0 0 chr9 75153222 75153251 -48922921 + AT_rich Low_complexity Low_complexity 1 29 0 2 1158 334 284 103 15 chr9 75154559 75154695 -48921477 - L1M5 LINE L1 -396 5768 5621 2 1158 258 106 0 0 chr9 75154696 75154743 -48921429 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1158 414 0 0 0 chr9 75154745 75154791 -48921381 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1158 630 225 91 43 chr9 75154925 75155111 -48921061 - B3A SINE B2 -3 195 1 2 1158 472 285 24 31 chr9 75155150 75155277 -48920895 + RSINE1 SINE B4 6 131 -34 2 1158 251 241 103 70 chr9 75155291 75155447 -48920725 - L1M5 LINE L1 -687 5475 5315 2 1158 473 344 107 44 chr9 75155451 75155910 -48920262 - L1MB8 LINE L1 -12 6166 5679 2 1158 756 247 6 24 chr9 75156017 75156183 -48919989 - RSINE1 SINE B4 0 165 3 2 1158 386 341 0 22 chr9 75156790 75156973 -48919199 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1158 372 192 0 0 chr9 75156984 75157083 -48919089 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1158 599 267 133 0 chr9 75157152 75157317 -48918855 - B4 SINE B4 -2 290 104 3 1158 231 308 107 33 chr9 75158099 75158259 -48917913 - MIRb SINE MIR -57 211 32 3 1158 967 229 18 9 chr9 75158509 75158729 -48917443 + ID_B1 SINE B4 3 224 0 3 1158 350 254 190 84 chr9 75158729 75158871 -48917301 + RSINE1 SINE B4 3 159 -6 3 1158 399 221 45 23 chr9 75160056 75160144 -48916028 + B3 SINE B2 127 216 0 3 1158 22 0 0 0 chr9 75160144 75160166 -48916006 + AT_rich Low_complexity Low_complexity 1 22 0 3 1158 240 111 0 0 chr9 75160172 75160208 -48915964 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 3 1158 890 246 15 5 chr9 75160208 75160401 -48915771 - B3 SINE B2 -19 197 2 3 1158 313 341 0 30 chr9 75160531 75160545 -48915627 + ID SINE ID 70 79 -145 3 1158 543 274 0 0 chr9 75160545 75160669 -48915503 + B1_Mur3 SINE Alu 2 125 -24 3 1158 200 133 0 43 chr9 75160706 75160753 -48915419 + (CAGAGA)n Simple_repeat Simple_repeat 6 50 0 3 1158 429 20 0 0 chr9 75161007 75161057 -48915115 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1158 888 19 0 0 chr9 75161057 75161162 -48915010 + (GA)n Simple_repeat Simple_repeat 2 107 0 3 1158 187 339 0 0 chr9 75161280 75161339 -48914833 + MIR SINE MIR 31 89 -173 3 1158 369 0 0 0 chr9 75161625 75161666 -48914506 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1158 188 67 33 0 chr9 75161810 75161840 -48914332 + (CCCCCA)n Simple_repeat Simple_repeat 2 32 0 3 1158 21 0 0 0 chr9 75161953 75161974 -48914198 + GC_rich Low_complexity Low_complexity 1 21 0 3 1158 195 42 0 0 chr9 75162954 75162978 -48913194 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 3 1158 225 210 28 139 chr9 75162984 75163056 -48913116 - LTR16E1 LTR ERVL -36 502 439 3 1158 836 75 0 0 chr9 75163886 75163993 -48912179 + B2_Mm2 SINE B2 1 107 -88 3 1158 612 232 0 0 chr9 75164258 75164435 -48911737 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 1158 601 285 35 24 chr9 75164608 75164777 -48911395 - B4 SINE B4 -42 250 80 3 1158 624 252 49 21 chr9 75165065 75165102 -48911070 + ID SINE ID 44 84 -140 3 1158 288 274 75 117 chr9 75165102 75165222 -48910950 + PB1D10 SINE Alu 1 115 -2 3 1158 282 272 62 39 chr9 75165760 75165777 -48910395 + CYRA11_Mm Unknown Y-chromosome 154 286 -331 3 1158 704 133 17 0 chr9 75165777 75165890 -48910282 - URR1B DNA MER1_type 0 225 111 3 1158 2345 88 21 24 chr9 75165890 75166218 -48909954 - ORR1A2 LTR MaLR 0 327 1 3 1158 570 281 148 0 chr9 75166270 75166480 -48909692 - MLT1D LTR MaLR -262 243 3 3 1158 372 152 0 148 chr9 75167697 75167805 -48908367 - ID_B1 SINE B4 -12 212 121 3 1158 1026 96 0 0 chr9 75168638 75168774 -48907398 + B1_Mus1 SINE Alu 3 138 -10 3 1158 975 168 32 11 chr9 75168812 75168999 -48907173 + B2_Mm2 SINE B2 5 195 0 3 1158 677 116 71 21 chr9 75169306 75169441 -48906731 - B2_Mm2 SINE B2 -53 140 3 3 1158 279 140 0 0 chr9 75170628 75170678 -48905494 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 3 1158 830 213 51 56 chr9 75170772 75170928 -48905244 + B3 SINE B2 2 167 -49 3 1158 431 103 23 0 chr9 75170928 75171015 -48905157 + (CATA)n Simple_repeat Simple_repeat 4 92 0 3 1158 830 213 51 56 chr9 75171015 75171072 -48905100 + B3 SINE B2 168 214 -2 3 1158 203 167 0 0 chr9 75171438 75171474 -48904698 + (CACAG)n Simple_repeat Simple_repeat 5 40 0 3 1158 211 236 21 65 chr9 75172155 75172341 -48903831 + (TGAG)n Simple_repeat Simple_repeat 2 179 0 3 1158 288 20 61 0 chr9 75172430 75172479 -48903693 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1158 1120 56 14 7 chr9 75172511 75172655 -48903517 + B1_Mus1 SINE Alu 4 148 0 3 1158 214 95 0 45 chr9 75172655 75172699 -48903473 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 3 1158 568 212 0 26 chr9 75172984 75173100 -48903072 - PB1D9 SINE Alu -1 119 7 3 1158 311 300 9 83 chr9 75173022 75173131 -48903041 - B4 SINE B4 -123 169 69 3 1158 516 221 41 10 chr9 75173663 75173794 -48902378 + ID_B1 SINE B4 72 220 -72 3 1158 270 81 0 0 chr9 75174556 75174593 -48901579 + (TCTCC)n Simple_repeat Simple_repeat 1 37 0 3 1158 588 208 92 8 chr9 75175598 75175729 -48900443 - B1_Mur1 SINE Alu -5 144 3 3 1158 327 305 0 0 chr9 75175867 75175949 -48900223 + BC1_Mm scRNA scRNA 1 82 -70 3 1158 744 289 62 31 chr9 75176014 75176320 -48899852 - MLT1F LTR MaLR -156 393 66 3 1158 994 182 31 5 chr9 75176350 75176543 -48899629 - MTD LTR MaLR 0 419 222 3 1158 1356 219 139 62 chr9 75176534 75176952 -48899220 - MTC-int LTR MaLR -435 823 374 3 1158 543 242 38 0 chr9 75176954 75177086 -48899086 + ID_B1 SINE B4 84 220 -4 3 1158 387 41 0 0 chr9 75177148 75177197 -48898975 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1158 552 247 28 23 chr9 75177285 75177433 -48898739 + B3A SINE B2 16 161 -37 3 1158 387 0 0 0 chr9 75177433 75177476 -48898696 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1158 288 277 48 122 chr9 75177476 75177516 -48898656 + B2_Mm2 SINE B2 159 190 -5 3 1158 411 261 18 18 chr9 75177753 75177866 -48898306 - PB1D10 SINE Alu 0 117 5 3 1158 898 215 76 31 chr9 75177962 75178194 -48897978 - ID_B1 SINE B4 -38 254 8 3 1158 1970 162 85 3 chr9 75178328 75178692 -48897480 - ORR1B1 LTR MaLR 0 394 1 3 1158 725 216 14 0 chr9 75179292 75179431 -48896741 + ID_B1 SINE B4 82 222 -2 3 1158 277 237 171 0 chr9 75180883 75180959 -48895213 + B4A SINE B4 2 90 -202 3 1158 493 280 83 0 chr9 75180963 75181095 -48895077 + RSINE1 SINE B4 2 144 -21 3 1158 468 0 0 0 chr9 75181096 75181148 -48895024 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1158 201 39 0 0 chr9 75181148 75181173 -48894999 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1158 443 174 22 34 chr9 75181202 75181291 -48894881 - B3 SINE B2 0 216 129 3 1158 1087 191 5 5 chr9 75181375 75181564 -48894608 - B3 SINE B2 -25 191 3 3 1158 788 198 50 50 chr9 75182394 75182575 -48893597 - B3 SINE B2 -33 183 3 3 1158 252 0 0 0 chr9 75182592 75182620 -48893552 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1158 180 0 0 0 chr9 75182620 75182640 -48893532 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1158 431 271 82 44 chr9 75182948 75183106 -48893066 - MER110 LTR ERV1 -220 271 108 3 1158 1368 61 0 0 chr9 75183117 75183385 -48892787 + (TG)n Simple_repeat Simple_repeat 1 268 0 3 1158 246 193 0 0 chr9 75185238 75185295 -48890877 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1158 326 82 61 0 chr9 75185299 75185348 -48890824 + HAL1-3A_ME LINE L1 1975 2026 -832 3 1158 251 311 28 55 chr9 75185456 75185565 -48890607 - L2a LINE L2 -7 3419 3314 3 1158 578 242 0 15 chr9 75186062 75186192 -48889980 + B3A SINE B2 55 182 -16 3 1158 696 166 3 41 chr9 75186205 75186557 -48889615 + (CA)n Simple_repeat Simple_repeat 1 338 0 3 1158 735 327 64 16 chr9 75186730 75186979 -48889193 + B4 SINE B4 32 292 0 3 1158 890 240 59 0 chr9 75187144 75187348 -48888824 + ID_B1 SINE B4 8 223 -1 3 1158 277 322 47 34 chr9 75187532 75187680 -48888492 - MIRb SINE MIR -92 176 27 3 1158 888 251 5 18 chr9 75188208 75188427 -48887745 - B3 SINE B2 0 216 1 3 1158 2399 123 139 19 chr9 75188431 75188847 -48887325 - RMER4A LTR ERVK 0 466 1 3 1158 351 0 0 0 chr9 75188859 75188898 -48887274 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1158 1193 42 0 7 chr9 75188900 75189043 -48887129 - B1_Mus1 SINE Alu -6 142 1 3 1158 481 268 7 86 chr9 75189377 75189516 -48886656 + ID_B1 SINE B4 70 197 -27 3 1158 775 196 79 40 chr9 75189770 75189972 -48886200 + B3 SINE B2 2 211 -5 3 1158 462 36 0 0 chr9 75190215 75190271 -48885901 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1158 2522 108 57 12 chr9 75190477 75190879 -48885293 - MTC LTR MaLR -1 420 1 3 1158 530 240 6 0 chr9 75192019 75192190 -48883982 + (TGGG)n Simple_repeat Simple_repeat 3 174 0 3 1158 222 91 0 0 chr9 75192203 75192236 -48883936 + (TGAG)n Simple_repeat Simple_repeat 4 36 0 3 1158 295 299 9 76 chr9 75193845 75193950 -48882222 + PB1D9 SINE Alu 10 107 -13 3 1158 185 108 0 26 chr9 75193975 75194013 -48882159 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 1158 441 263 161 29 chr9 75194021 75194158 -48882014 - RSINE1 SINE B4 0 165 11 3 1158 358 281 82 58 chr9 75194185 75194393 -48881779 - ID_B1 SINE B4 -11 213 1 3 1158 302 273 178 42 chr9 75194641 75194832 -48881340 - Charlie1 DNA MER1_type -2552 229 13 3 1158 905 140 208 31 chr9 75195068 75195260 -48880912 + URR1A DNA MER1_type 1 226 0 3 1158 372 156 0 15 chr9 75195437 75195502 -48880670 + B1F SINE Alu 1 64 -85 3 1158 621 266 76 25 chr9 75196238 75196435 -48879737 - ID_B1 SINE B4 -16 208 2 3 1158 294 29 0 0 chr9 75196440 75196475 -48879697 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1158 336 245 63 28 chr9 75196862 75196958 -48879214 + ID4 SINE ID 3 98 -54 3 1158 300 154 0 0 chr9 75196960 75197012 -48879160 + GA-rich Low_complexity Low_complexity 4 55 0 3 1158 250 281 18 0 chr9 75198514 75198571 -48877601 - tRNA-Ala-GCY_ tRNA tRNA -9 66 9 3 1158 812 227 19 0 chr9 75198585 75198739 -48877433 - B3A SINE B2 -38 160 4 3 1158 1119 180 24 19 chr9 75199579 75199789 -48876383 - B3 SINE B2 -3 213 3 3 1158 211 304 90 80 chr9 75200004 75200026 -48876146 - B3 SINE B2 -113 103 3 4 1158 398 295 0 0 chr9 75200026 75200104 -48876068 - RSINE1 SINE B4 -84 81 4 4 1158 604 291 25 0 chr9 75200252 75200410 -48875762 - RSINE1 SINE B4 -1 164 3 4 1158 851 291 81 22 chr9 75200780 75201306 -48874866 - L1MB7 LINE L1 -18 6166 5601 4 1158 722 251 76 11 chr9 75201703 75201888 -48874284 - B3A SINE B2 0 198 2 4 1158 303 289 98 30 chr9 75201958 75202090 -48874082 - RSINE1 SINE B4 -22 143 3 4 1158 578 266 84 73 chr9 75202162 75202447 -48873725 + B4A SINE B4 3 288 -4 4 1158 589 284 90 0 chr9 75202519 75202674 -48873498 + ID_B1 SINE B4 40 208 -16 4 1158 1384 83 15 20 chr9 75202674 75202870 -48873302 - B2_Mm2 SINE B2 0 195 1 4 1158 305 255 87 48 chr9 75202926 75203029 -48873143 + PB1D10 SINE Alu 3 109 -8 4 1158 348 24 0 0 chr9 75203426 75203467 -48872705 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1158 530 225 75 37 chr9 75203609 75203743 -48872429 - ID_B1 SINE B4 -4 220 82 4 1158 335 255 124 40 chr9 75203787 75204012 -48872160 - HAL1 LINE L1 -249 2258 2015 4 1158 1372 92 5 0 chr9 75204032 75204216 -48871956 - B2_Mm1a SINE B2 -8 185 1 4 1158 255 278 91 54 chr9 75204399 75204585 -48871587 - HAL1 LINE L1 -692 1815 1623 4 1158 217 89 44 0 chr9 75204869 75204914 -48871258 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1158 1220 53 0 0 chr9 75204914 75205065 -48871107 - B2_Mm2 SINE B2 -43 152 2 4 1158 667 168 143 0 chr9 75206156 75206275 -48869897 - B1_Mur4 SINE Alu -8 142 7 4 1158 331 154 129 99 chr9 75206193 75206294 -48869878 - MT2B LTR ERVL -344 257 154 4 1158 186 43 0 0 chr9 75206393 75206416 -48869756 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1158 777 105 23 61 chr9 75206422 75206554 -48869618 - B2_Mm2 SINE B2 -55 140 14 4 1158 946 200 84 0 chr9 75206626 75206816 -48869356 + B3 SINE B2 4 209 -7 4 1158 778 199 0 72 chr9 75206821 75206973 -48869199 + B1_Mur1 SINE Alu 2 142 -7 4 1158 461 179 24 0 chr9 75207025 75207109 -48869063 - MTEa LTR MaLR -291 88 3 4 1158 526 105 167 293 chr9 75207183 75207398 -48868774 - B2_Mm2 SINE B2 -6 189 2 4 1158 1699 198 80 40 chr9 75208149 75208523 -48867649 + MTD LTR MaLR 23 411 -8 4 1158 731 219 231 4 chr9 75208783 75209021 -48867151 + B4A SINE B4 1 292 0 4 1158 661 197 0 22 chr9 75209041 75209223 -48866949 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 4 1158 432 293 8 0 chr9 75209223 75209356 -48866816 + (CA)n Simple_repeat Simple_repeat 1 134 0 4 1158 311 152 151 81 chr9 75209359 75209445 -48866727 + HAL1-3A_ME LINE L1 1976 2067 -791 4 1158 235 291 162 7 chr9 75210259 75210401 -48865771 - L2c LINE L2 -172 3215 3052 4 1158 529 149 200 75 chr9 75210618 75210778 -48865394 + MTD LTR MaLR 13 192 -227 4 1158 462 60 227 4 chr9 75211590 75211677 -48864495 - B1_Mus1 SINE Alu -15 102 2 4 1158 291 183 13 66 chr9 75211612 75211688 -48864484 - B4A SINE B4 -141 151 80 4 1158 1157 111 54 32 chr9 75211707 75211893 -48864279 + B2_Mm1a SINE B2 1 190 -3 4 1158 580 252 49 7 chr9 75212032 75212176 -48863996 + RSINE1 SINE B4 5 154 -11 4 1158 313 308 95 23 chr9 75212200 75212513 -48863659 - L1M4 LINE L1 -653 5530 5195 4 1158 476 122 188 30 chr9 75212511 75212612 -48863560 - L1M4 LINE L1 -2506 3640 3524 4 1158 25 0 0 0 chr9 75212634 75212659 -48863513 + AT_rich Low_complexity Low_complexity 1 25 0 4 1158 316 252 186 18 chr9 75212676 75212853 -48863319 + L1M3 LINE L1 5496 5698 -464 4 1158 979 129 19 0 chr9 75213135 75213289 -48862883 + ORR1C1 LTR MaLR 1 157 -221 4 1158 723 34 0 0 chr9 75213289 75213377 -48862795 + B2_Mm2 SINE B2 1 88 -107 4 1158 355 252 39 70 chr9 75213377 75213417 -48862755 + RSINE1 SINE B4 2 125 -40 4 1158 220 246 17 50 chr9 75213582 75213642 -48862530 + PB1D10 SINE Alu 33 90 -27 4 1158 265 182 91 67 chr9 75214836 75215001 -48861171 - Lx9 LINE L1 0 7644 7476 4 1158 5423 238 114 39 chr9 75215051 75216925 -48859247 - Lx9 LINE L1 -115 7529 5452 4 1158 2280 155 103 102 chr9 75216925 75217457 -48858715 - RMER16 LTR ERVK 0 533 1 4 1158 5123 218 45 88 chr9 75217457 75217723 -48858449 - Lx9 LINE L1 -396 5451 5195 4 1158 945 131 96 11 chr9 75217723 75217751 -48858421 - B2_Mm2 SINE B2 -1 194 162 4 1158 351 0 0 0 chr9 75217751 75217790 -48858382 + (TATG)n Simple_repeat Simple_repeat 2 40 0 4 1158 945 131 96 11 chr9 75217790 75217939 -48858233 - B2_Mm2 SINE B2 -34 161 2 4 1158 5123 218 45 88 chr9 75217939 75219028 -48857144 - Lx9 LINE L1 -653 5194 4176 4 1158 1747 209 87 5 chr9 75219028 75219417 -48856755 + MTC LTR MaLR 1 421 0 4 1158 2271 252 80 83 chr9 75219417 75219926 -48856246 + MTC-int LTR MaLR 1 506 -752 4 1158 180 55 0 98 chr9 75219926 75219987 -48856185 + (CACG)n Simple_repeat Simple_repeat 4 58 0 4 1158 2271 252 80 83 chr9 75219987 75220413 -48855759 + MTC-int LTR MaLR 507 933 -325 4 1158 274 245 0 0 chr9 75220407 75220460 -48855712 - B1_Mus2 SINE Alu -93 54 2 4 1158 1831 263 83 29 chr9 75221406 75221423 -48854749 - Lx9 LINE L1 -2801 3046 3034 4 1158 1078 70 7 40 chr9 75221423 75221573 -48854599 - B1_Mus2 SINE Alu 0 147 3 4 1158 1831 263 83 29 chr9 75221573 75222312 -48853860 - Lx9 LINE L1 -2814 3033 2249 4 1158 596 245 35 14 chr9 75223906 75224051 -48852121 - B1_Mur3 SINE Alu -1 148 1 4 1158 854 190 152 0 chr9 75224051 75224235 -48851937 - B3 SINE B2 -4 212 1 4 1158 1340 240 73 28 chr9 75224236 75224268 -48851904 - Lx9 LINE L1 -3637 2210 2180 4 1158 1482 128 58 122 chr9 75224268 75224661 -48851511 + RLTR9A LTR ERVK 1 368 0 4 1158 1340 240 73 28 chr9 75224661 75224761 -48851411 - Lx9 LINE L1 -3668 2179 2085 4 1158 887 117 7 33 chr9 75224761 75224911 -48851261 - B1_Mus2 SINE Alu 0 147 2 4 1158 1340 240 73 28 chr9 75224911 75225201 -48850971 - Lx9 LINE L1 -3763 2084 1768 4 1158 1127 82 90 45 chr9 75225202 75225380 -48850792 + B2_Mm2 SINE B2 3 188 -7 4 1158 870 152 27 20 chr9 75225384 75225532 -48850640 + B1_Mur4 SINE Alu 2 150 0 4 1158 963 108 7 7 chr9 75225532 75225672 -48850500 + B1_Mus1 SINE Alu 7 146 -2 4 1158 1862 223 69 52 chr9 75225676 75226285 -48849887 - Lx9 LINE L1 -4093 1754 1158 4 1158 1302 84 45 0 chr9 75226285 75226463 -48849709 - B2_Mm2 SINE B2 -8 187 2 4 1158 1459 204 87 96 chr9 75226463 75226771 -48849401 - Lx9 LINE L1 -6451 1157 842 4 1158 351 0 0 0 chr9 75226806 75226845 -48849327 + (GGCTG)n Simple_repeat Simple_repeat 3 41 0 4 1158 371 233 41 48 chr9 75226988 75227231 -48848941 - Lx9 LINE L1 -6734 874 520 4 1158 757 241 11 38 chr9 75227457 75227611 -48848561 + B3A SINE B2 2 154 -44 4 1158 801 104 0 0 chr9 75227611 75227746 -48848426 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 1158 180 0 0 0 chr9 75227747 75227767 -48848405 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 1158 757 241 11 38 chr9 75227767 75227795 -48848377 + B3A SINE B2 155 181 -17 4 1158 408 149 0 0 chr9 75227806 75227900 -48848272 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1158 37 23 0 0 chr9 75227900 75227944 -48848228 + AT_rich Low_complexity Low_complexity 1 44 0 4 1158 363 253 27 0 chr9 75227957 75228032 -48848140 + PB1D7 SINE Alu 3 79 -41 4 1158 1188 55 7 0 chr9 75228491 75228637 -48847535 + B1_Mus1 SINE Alu 2 148 0 4 1158 1215 89 67 0 chr9 75228649 75228829 -48847343 + B2_Mm2 SINE B2 2 193 -2 4 1158 2174 74 97 7 chr9 75229148 75229446 -48846726 - ORR1A2 LTR MaLR -2 325 1 4 1158 512 285 90 32 chr9 75229748 75229785 -48846387 + B3A SINE B2 28 64 -134 4 1158 949 92 7 21 chr9 75229785 75229925 -48846247 + B1_Mus1 SINE Alu 2 140 -8 4 1158 243 0 0 0 chr9 75229925 75229952 -48846220 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1158 512 285 90 32 chr9 75229952 75230074 -48846098 + B3A SINE B2 65 192 -6 4 1158 865 250 45 10 chr9 75230082 75230284 -48845888 + B3 SINE B2 6 214 -2 4 1158 318 0 0 0 chr9 75230742 75230782 -48845390 - RLTR13B4 LTR ERVK 0 803 764 4 1158 180 0 0 0 chr9 75231056 75231076 -48845096 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1158 534 218 77 12 chr9 75231152 75231370 -48844802 - RLTR40 LTR ERVK -53 764 478 4 1158 629 218 24 87 chr9 75231381 75231563 -48844609 + B3 SINE B2 1 189 -27 4 1158 1126 71 7 0 chr9 75231563 75231703 -48844469 - B1_Mus1 SINE Alu -6 142 2 4 1158 594 218 24 87 chr9 75231703 75231726 -48844446 + B2_Mm2 SINE B2 173 192 -3 4 1158 739 209 62 28 chr9 75231733 75231910 -48844262 - B3A SINE B2 -15 183 1 4 1158 844 182 7 14 chr9 75231925 75232070 -48844102 + B1_Mur2 SINE Alu 6 149 0 4 1158 279 0 0 0 chr9 75232105 75232136 -48844036 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1158 222 37 0 0 chr9 75232136 75232162 -48844010 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1158 877 171 60 108 chr9 75232163 75232432 -48843740 - RLTR40 LTR ERVK -535 282 27 4 1158 692 232 75 5 chr9 75233382 75233568 -48842604 - B3 SINE B2 -17 199 1 4 1158 307 268 169 44 chr9 75233592 75233752 -48842420 - B3 SINE B2 -33 183 4 4 1158 545 284 158 0 chr9 75233804 75233987 -48842185 + ID_B1 SINE B4 11 222 -2 4 1158 207 0 0 0 chr9 75234188 75234211 -48841961 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1159 258 105 0 0 chr9 75235622 75235660 -48840512 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1159 336 248 46 119 chr9 75236994 75237145 -48839027 - PB1D10 SINE Alu -9 140 1 4 1159 273 252 38 28 chr9 75237052 75237158 -48839014 - ID_B1 SINE B4 -48 176 70 4 1159 1049 41 6 76 chr9 75238241 75238399 -48837773 + B1_Mus2 SINE Alu 1 147 0 4 1159 180 0 0 0 chr9 75238409 75238429 -48837743 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1159 207 0 0 0 chr9 75238476 75238499 -48837673 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1159 520 158 0 87 chr9 75238499 75238603 -48837569 - B1_Mus2 SINE Alu 0 147 53 4 1159 279 185 200 0 chr9 75238873 75238938 -48837234 - MADE2 DNA Mariner 0 80 3 4 1159 211 246 18 0 chr9 75239337 75239394 -48836778 - ID4_ SINE ID -25 58 1 4 1159 424 247 11 0 chr9 75239902 75239995 -48836177 + RSINE1 SINE B4 5 98 -67 4 1159 868 218 41 31 chr9 75240054 75240248 -48835924 - B3 SINE B2 -19 197 2 4 1159 3091 72 2 8 chr9 75240369 75240763 -48835409 + MTA_Mm LTR MaLR 1 392 -4 4 1159 1203 81 92 6 chr9 75240794 75240968 -48835204 + B2_Mm2 SINE B2 1 189 -6 4 1159 440 278 13 7 chr9 75241537 75241689 -48834483 + L1M4 LINE L1 4864 5016 -1130 5 1159 725 165 70 16 chr9 75241689 75241818 -48834354 + B1_Mus2 SINE Alu 11 146 -1 5 1159 570 228 239 29 chr9 75241858 75242138 -48834034 + L1M4 LINE L1 5019 5357 -789 5 1159 232 339 155 22 chr9 75242146 75242327 -48833845 + B4 SINE B4 20 224 -68 5 1159 408 243 9 53 chr9 75242215 75242328 -48833844 + PB1D7 SINE Alu 13 120 0 5 1159 550 254 147 19 chr9 75242362 75242610 -48833562 + L1M4 LINE L1 5478 5781 -398 5 1159 278 291 118 0 chr9 75244092 75244202 -48831970 - RSINE1 SINE B4 -24 141 19 5 1159 402 237 103 0 chr9 75244356 75244453 -48831719 - B1_Mur1 SINE Alu 0 149 43 5 1159 350 314 98 8 chr9 75244736 75244858 -48831314 + B1F SINE Alu 16 148 -1 5 1159 1073 69 226 0 chr9 75244896 75245055 -48831117 + B2_Mm2 SINE B2 1 195 0 5 1159 1154 58 0 0 chr9 75245060 75245199 -48830973 + B1_Mus1 SINE Alu 2 140 -8 5 1159 192 40 0 0 chr9 75245203 75245228 -48830944 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1159 361 240 80 40 chr9 75246655 75246755 -48829417 + PB1D7 SINE Alu 6 109 -11 5 1159 222 62 0 0 chr9 75246755 75246787 -48829385 + (TCCG)n Simple_repeat Simple_repeat 2 33 0 5 1159 346 225 197 23 chr9 75246900 75247032 -48829140 + B4A SINE B4 5 159 -133 5 1159 945 109 14 28 chr9 75247214 75247356 -48828816 - B1_Mur3 SINE Alu 0 149 10 5 1159 445 240 40 0 chr9 75247644 75247744 -48828428 - B4A SINE B4 -188 104 1 5 1159 698 227 14 0 chr9 75247860 75248001 -48828171 + B1F2 SINE Alu 1 143 -6 5 1159 1238 48 0 13 chr9 75248148 75248297 -48827875 - B1_Mus2 SINE Alu 0 147 1 5 1159 252 0 0 0 chr9 75248436 75248464 -48827708 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1159 411 200 260 0 chr9 75248993 75249093 -48827079 - B1_Mur1 SINE Alu -15 134 9 5 1159 318 189 147 13 chr9 75250365 75250440 -48825732 + PB1D10 SINE Alu 29 113 -4 5 1159 539 187 61 54 chr9 75250474 75250621 -48825551 + B3 SINE B2 66 213 -3 5 1159 288 0 0 0 chr9 75251277 75251309 -48824863 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1159 306 0 0 0 chr9 75251309 75251343 -48824829 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1159 279 0 0 0 chr9 75251343 75251373 -48824799 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1159 23 33 0 0 chr9 75251884 75251914 -48824258 + AT_rich Low_complexity Low_complexity 1 30 0 5 1159 1202 55 0 0 chr9 75251916 75252062 -48824110 + B1_Mus2 SINE Alu 1 146 -1 5 1159 207 0 0 0 chr9 75252068 75252091 -48824081 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1159 295 309 37 0 chr9 75252100 75252181 -48823991 + ID SINE ID 5 88 -136 5 1159 378 0 0 0 chr9 75252237 75252279 -48823893 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1159 467 269 18 55 chr9 75252348 75252513 -48823659 - RSINE1 SINE B4 -4 161 3 5 1159 1376 227 42 71 chr9 75252584 75252992 -48823180 - MTD LTR MaLR -14 405 10 5 1159 417 155 20 30 chr9 75253006 75253106 -48823066 + Lx LINE L1 6555 6653 -1 5 1159 294 266 0 0 chr9 75253194 75253258 -48822914 + PB1 SINE Alu 52 115 -12 5 1159 432 0 0 0 chr9 75253269 75253317 -48822855 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1159 757 263 17 6 chr9 75253355 75253531 -48822641 + B3A SINE B2 1 178 -20 5 1159 469 205 24 0 chr9 75253568 75253651 -48822521 - B1_Mus2 SINE Alu -61 86 2 5 1159 1384 75 37 5 chr9 75253680 75253867 -48822305 + B2_Mm2 SINE B2 2 194 -1 5 1159 217 258 76 0 chr9 75253927 75253993 -48822179 + PB1D10 SINE Alu 47 117 0 5 1159 1002 187 30 10 chr9 75255107 75255307 -48820865 + B3 SINE B2 3 206 -10 5 1159 312 231 80 36 chr9 75256376 75256488 -48819684 + PB1D10 SINE Alu 1 117 0 5 1159 30 103 0 0 chr9 75257410 75257517 -48818655 + GC_rich Low_complexity Low_complexity 1 107 0 5 1159 22 88 0 0 chr9 75257592 75257649 -48818523 + GC_rich Low_complexity Low_complexity 1 57 0 5 1159 21 71 0 0 chr9 75257878 75257920 -48818252 + GC_rich Low_complexity Low_complexity 1 42 0 5 1159 296 164 91 0 chr9 75258431 75258486 -48817686 + B1_Mur2 SINE Alu 82 141 -8 5 1159 550 231 69 8 chr9 75258494 75258625 -48817547 + ID_B1 SINE B4 86 224 0 5 1159 322 296 19 0 chr9 75258810 75258918 -48817254 - PB1D10 SINE Alu -7 110 1 5 1159 251 304 59 135 chr9 75259202 75259624 -48816548 - MER110A LTR ERV1 -20 448 59 5 1159 301 286 92 85 chr9 75259542 75259605 -48816567 + B4 SINE B4 23 86 -206 5 1159 408 245 10 31 chr9 75259605 75259702 -48816470 + PB1D10 SINE Alu 1 95 -22 5 1159 331 250 12 0 chr9 75259934 75260014 -48816158 - PB1D10 SINE Alu -4 113 33 5 1159 231 292 14 0 chr9 75260192 75260264 -48815908 - Kanga1c DNA Tc2 -4 725 653 5 1159 537 271 129 0 chr9 75260303 75260443 -48815729 + B3 SINE B2 56 213 -3 5 1159 777 182 21 14 chr9 75260447 75260592 -48815580 + B1_Mur4 SINE Alu 3 148 -2 5 1159 365 316 165 9 chr9 75261489 75261719 -48814453 + MER45B DNA Tip100 247 512 -528 5 1159 366 380 50 10 chr9 75261753 75261955 -48814217 + MER45B DNA Tip100 605 814 -226 5 1159 3244 102 26 4 chr9 75262336 75262801 -48813371 - MT2C_Mm LTR ERVL 0 475 1 5 1159 810 115 90 0 chr9 75263122 75263244 -48812928 + B1_Mus1 SINE Alu 4 136 -12 5 1159 2281 103 25 3 chr9 75263802 75264122 -48812050 + ORR1A2 LTR MaLR 1 327 0 5 1159 1998 149 64 50 chr9 75264272 75264703 -48811469 - MT2C_Mm LTR ERVL 0 493 6 5 1159 238 243 99 72 chr9 75264813 75264924 -48811248 - CR1_Mam LINE CR1 -556 1648 1535 5 1159 376 236 93 9 chr9 75266213 75266320 -48809852 - PB1D7 SINE Alu -1 119 4 5 1159 547 302 60 47 chr9 75266327 75266542 -48809630 - ID_B1 SINE B4 -4 220 3 5 1159 389 204 233 0 chr9 75266705 75266808 -48809364 - B3 SINE B2 -14 202 76 5 1159 2057 160 62 37 chr9 75266817 75266903 -48809269 + MTC LTR MaLR 1 88 -333 5 1159 1155 71 0 0 chr9 75266903 75267044 -48809128 + B1_Mus2 SINE Alu 1 141 -6 5 1159 180 0 0 0 chr9 75267045 75267065 -48809107 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1159 2057 160 62 37 chr9 75267065 75267379 -48808793 + MTC LTR MaLR 89 413 -8 5 1159 389 186 0 0 chr9 75267375 75267445 -48808727 - B3 SINE B2 -145 71 2 5 1159 338 197 0 16 chr9 75267676 75267738 -48808434 + ID4_ SINE ID 3 63 -20 5 1159 820 228 49 19 chr9 75267761 75267958 -48808214 + B3 SINE B2 1 189 -27 5 1159 1200 49 7 0 chr9 75267958 75268102 -48808070 + B1_Mus1 SINE Alu 4 148 0 5 1159 528 235 38 122 chr9 75268102 75268117 -48808055 + B2_Mm2 SINE B2 180 194 -1 5 1159 198 0 0 0 chr9 75268392 75268414 -48807758 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1159 1156 41 0 52 chr9 75268414 75268569 -48807603 - B1_Mus1 SINE Alu 0 148 2 5 1159 640 266 73 37 chr9 75268590 75268849 -48807323 + LTR16A LTR ERVL 145 445 -6 5 1159 252 314 107 0 chr9 75268855 75268976 -48807196 + HERV16-int LTR ERVL 1 134 -4862 5 1159 339 211 56 0 chr9 75269112 75269183 -48806989 - B3A SINE B2 -123 75 1 5 1159 215 340 133 40 chr9 75269161 75269196 -48806976 - B4 SINE B4 -37 255 216 5 1159 1074 105 105 0 chr9 75269196 75269368 -48806804 - B2_Mm1t SINE B2 -2 191 2 5 1159 565 296 6 2 chr9 75269368 75269482 -48806690 - ID_B1 SINE B4 -77 215 88 5 1159 2839 128 31 42 chr9 75269482 75269962 -48806210 + MT2C_Mm LTR ERVL 1 475 0 5 1159 440 346 68 8 chr9 75270057 75270350 -48805822 + ERVL-E-int LTR ERVL 3976 4357 -1128 5 1159 538 274 102 12 chr9 75270973 75271139 -48805033 + B4A SINE B4 59 239 -53 5 1159 603 167 18 9 chr9 75271128 75271237 -48804935 + B1_Mus1 SINE Alu 6 115 -33 5 1159 822 192 0 14 chr9 75271256 75271404 -48804768 + B1_Mus1 SINE Alu 2 147 -1 5 1159 779 284 52 0 chr9 75271526 75271755 -48804417 + LTR16A LTR ERVL 209 449 -2 5 1159 198 0 0 0 chr9 75271907 75271929 -48804243 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1159 222 280 0 0 chr9 75271966 75272016 -48804156 - PB1D7 SINE Alu -70 50 1 5 1159 604 213 9 0 chr9 75272016 75272081 -48804091 - B4 SINE B4 -207 85 20 5 1159 632 256 57 6 chr9 75272324 75272501 -48803671 - L1MC4 LINE L1 -616 7426 7241 5 1159 260 231 38 13 chr9 75272869 75272948 -48803224 + RMER20B LTR ERVK 283 363 -264 5 1159 573 15 0 0 chr9 75272977 75273043 -48803129 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1159 769 162 0 75 chr9 75273206 75273353 -48802819 - B1_Mur3 SINE Alu -13 136 1 5 1159 379 299 166 53 chr9 75273383 75273818 -48802354 - L1MC4 LINE L1 -1065 6977 6494 5 1159 267 291 129 86 chr9 75273865 75274004 -48802168 + MER21B LTR ERV1 1 145 -718 5 1159 873 280 263 23 chr9 75274034 75274600 -48801572 + MER21B LTR ERV1 43 744 -119 5 1159 353 266 115 90 chr9 75275102 75275381 -48800791 - MLT1A1 LTR MaLR -1 407 74 5 1159 972 227 32 23 chr9 75275581 75275802 -48800370 - ID_B1 SINE B4 0 224 2 5 1159 468 274 9 9 chr9 75275941 75276055 -48800117 - PB1D7 SINE Alu -1 119 6 5 1159 226 211 110 27 chr9 75276334 75276407 -48799765 - B4 SINE B4 -213 79 1 5 1159 493 272 88 0 chr9 75276474 75276587 -48799585 - RSINE1 SINE B4 -19 146 28 5 1159 375 23 0 0 chr9 75276587 75276631 -48799541 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1159 493 272 88 0 chr9 75276631 75276642 -48799530 - RSINE1 SINE B4 -138 27 12 5 1159 2210 141 39 26 chr9 75276900 75277285 -48798887 + ORR1B1 LTR MaLR 5 394 0 5 1159 2642 103 24 5 chr9 75277402 75277781 -48798391 - ORR1B1 LTR MaLR -8 386 1 5 1159 699 203 72 0 chr9 75277815 75277953 -48798219 - B1_Mur2 SINE Alu 0 149 2 5 1159 1406 79 26 0 chr9 75278009 75278199 -48797973 - B2_Mm2 SINE B2 0 195 1 5 1159 1310 107 16 5 chr9 75279623 75279811 -48796361 - B2_Mm2 SINE B2 -4 191 2 5 1159 196 331 163 31 chr9 75279820 75280016 -48796156 - L2b LINE L2 -4 3371 3150 6 1159 443 33 0 32 chr9 75280019 75280081 -48796091 + (GGGTG)n Simple_repeat Simple_repeat 3 62 0 6 1159 275 317 12 0 chr9 75280216 75280298 -48795874 - ID4 SINE ID 0 83 1 6 1159 377 236 95 52 chr9 75280298 75280414 -48795758 - PB1 SINE Alu -2 125 5 6 1159 195 42 0 0 chr9 75280692 75280716 -48795456 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1159 207 42 20 78 chr9 75280846 75280897 -48795275 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 6 1159 800 264 13 19 chr9 75280930 75281141 -48795031 + B3A SINE B2 7 216 0 6 1159 304 336 69 69 chr9 75281152 75281283 -48794889 + ID_B1 SINE B4 1 131 -93 6 1159 713 64 54 0 chr9 75281269 75281377 -48794795 + B2_Mm2 SINE B2 17 139 -54 6 1159 1251 114 11 0 chr9 75281420 75281596 -48794576 + B2_Mm1t SINE B2 2 179 -14 6 1159 369 77 26 62 chr9 75281662 75281778 -48794394 + B2_Mm2 SINE B2 47 194 -1 6 1159 457 256 0 25 chr9 75282232 75282352 -48793820 + PB1D10 SINE Alu 1 117 0 6 1159 23 0 0 0 chr9 75282663 75282686 -48793486 + AT_rich Low_complexity Low_complexity 1 23 0 6 1159 243 0 0 0 chr9 75282686 75282713 -48793459 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 6 1159 626 80 69 20 chr9 75282713 75282815 -48793357 - B1_Mur3 SINE Alu -8 141 35 6 1159 233 174 20 61 chr9 75282888 75282937 -48793235 + B1_Mur4 SINE Alu 2 48 -102 6 1159 1135 197 72 80 chr9 75282930 75283316 -48792856 - RMER17C LTR ERVK -25 385 3 6 1159 547 167 0 30 chr9 75283316 75283405 -48792767 + B1_Mus2 SINE Alu 50 135 -12 6 1159 789 85 102 8 chr9 75283530 75283648 -48792524 - B1_Mur3 SINE Alu -11 138 10 6 1159 486 0 0 0 chr9 75284470 75284524 -48791648 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1159 449 226 186 6 chr9 75284629 75284786 -48791386 - MTD LTR MaLR -14 405 212 6 1159 881 190 5 53 chr9 75285032 75285221 -48790951 - MTD LTR MaLR -236 183 4 6 1159 514 270 96 6 chr9 75285467 75285624 -48790548 + B3A SINE B2 1 156 -39 6 1159 432 0 0 0 chr9 75285624 75285672 -48790500 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1159 397 279 48 38 chr9 75285672 75285700 -48790472 + B2_Mm2 SINE B2 157 187 -8 6 1159 2070 136 9 79 chr9 75285838 75286279 -48789893 + RMER17C LTR ERVK 1 410 0 6 1159 684 202 0 0 chr9 75286300 75286419 -48789753 - B1_Mur2 SINE Alu -1 148 30 6 1159 768 133 17 0 chr9 75286421 75286541 -48789631 - B1_Mus1 SINE Alu -6 142 21 6 1159 372 224 26 86 chr9 75286440 75286557 -48789615 - MT2B LTR ERVL -323 278 169 6 1159 416 207 81 161 chr9 75286640 75286717 -48789455 + ID_B1 SINE B4 77 152 -72 6 1159 1437 71 38 0 chr9 75286717 75286900 -48789272 + B2_Mm2 SINE B2 3 192 -3 6 1159 416 207 81 161 chr9 75286900 75286983 -48789189 + ID_B1 SINE B4 153 224 0 6 1159 862 137 214 0 chr9 75287197 75287379 -48788793 - URR1B DNA MER1_type 0 225 5 6 1159 1104 89 7 0 chr9 75287451 75287597 -48788575 + B2_Mm2 SINE B2 3 149 -46 6 1159 412 77 29 12 chr9 75287628 75287732 -48788440 + B2_Mm2 SINE B2 47 188 -7 6 1159 1044 209 0 102 chr9 75287749 75287984 -48788188 + B3 SINE B2 6 216 0 6 1159 24 32 0 0 chr9 75287984 75288015 -48788157 + AT_rich Low_complexity Low_complexity 1 31 0 6 1159 322 225 162 0 chr9 75288081 75288161 -48788011 - B1F SINE Alu -30 119 27 6 1159 238 329 154 30 chr9 75288161 75288250 -48787922 - ID_B1 SINE B4 -27 197 8 6 1159 444 134 16 179 chr9 75288328 75288490 -48787682 - B1_Mur3 SINE Alu 0 149 19 6 1159 361 342 23 79 chr9 75288371 75288587 -48787585 - B4 SINE B4 -84 208 5 6 1159 1692 31 0 0 chr9 75288603 75288795 -48787377 - B2_Mm1a SINE B2 0 193 2 6 1159 510 222 62 23 chr9 75288802 75288931 -48787241 - ID_B1 SINE B4 0 224 91 6 1159 433 172 9 83 chr9 75288964 75289072 -48787100 - B1_Mur1 SINE Alu 0 149 50 6 1159 237 65 0 0 chr9 75289446 75289477 -48786695 + (CGGG)n Simple_repeat Simple_repeat 3 33 0 6 1159 219 258 91 66 chr9 75290318 75290435 -48785737 - L2b LINE L2 0 3387 3278 6 1159 212 227 0 0 chr9 75290729 75290773 -48785399 + (CCTG)n Simple_repeat Simple_repeat 2 45 0 6 1159 245 281 59 59 chr9 75290794 75290896 -48785276 - PB1D10 SINE Alu -15 102 1 6 1159 338 302 120 23 chr9 75290919 75291177 -48784995 - L1M4b LINE L1 -1825 5181 4899 6 1159 531 192 97 19 chr9 75291174 75291328 -48784844 - L1M4b LINE L1 -2785 4221 4056 6 1159 468 279 61 54 chr9 75291328 75291476 -48784696 + B1F2 SINE Alu 1 149 0 6 1159 720 115 205 0 chr9 75291546 75291668 -48784504 - B1_Mus2 SINE Alu 0 147 1 6 1159 400 207 241 43 chr9 75291674 75291815 -48784357 - L1M4b LINE L1 -5251 2083 1915 6 1159 1408 251 140 34 chr9 75291858 75292357 -48783815 - RMER4B LTR ERVK -33 552 1 6 1159 508 211 16 58 chr9 75292718 75292839 -48783333 - B1F SINE Alu -7 142 27 6 1159 1648 31 5 0 chr9 75293843 75294034 -48782138 - B2_Mm1a SINE B2 0 193 2 6 1159 1084 170 56 10 chr9 75294062 75294258 -48781914 - B3 SINE B2 -10 206 2 6 1159 1685 26 0 0 chr9 75294630 75294822 -48781350 - B2_Mm1a SINE B2 0 193 2 6 1159 239 331 99 0 chr9 75295549 75295670 -48780502 + L2 LINE L2 801 933 -2486 6 1159 1171 29 50 0 chr9 75296335 75296474 -48779698 - B1_Mus2 SINE Alu 0 147 2 6 1159 317 156 0 17 chr9 75296678 75296736 -48779436 - PB1D10 SINE Alu -1 126 59 6 1159 283 200 110 41 chr9 75296684 75296757 -48779415 - ID_B1 SINE B4 -7 217 140 6 1159 641 218 0 8 chr9 75296927 75297052 -48779120 + B1F SINE Alu 26 149 0 6 1159 878 171 0 52 chr9 75297402 75297556 -48778616 + B1_Mus2 SINE Alu 2 147 0 6 1159 489 219 8 48 chr9 75297977 75298102 -48778070 - PB1D9 SINE Alu 0 120 1 6 1159 1232 84 79 0 chr9 75298402 75298420 -48777752 - B2_Mm1a SINE B2 -1 192 162 6 1159 183 42 0 0 chr9 75298420 75298444 -48777728 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 6 1159 1232 84 79 0 chr9 75298444 75298603 -48777569 - B2_Mm1a SINE B2 -32 161 2 6 1159 1417 59 26 26 chr9 75298679 75298711 -48777461 - B2_Mm1t SINE B2 0 193 161 6 1159 423 0 0 0 chr9 75298711 75298758 -48777414 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 1159 1417 59 26 26 chr9 75298758 75298917 -48777255 - B2_Mm1t SINE B2 -33 160 2 6 1159 192 40 0 0 chr9 75299064 75299089 -48777083 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 6 1159 390 228 124 38 chr9 75299092 75299197 -48776975 - PB1D10 SINE Alu 0 117 4 6 1159 1845 190 44 6 chr9 75300039 75300399 -48775773 + ORR1D1 LTR MaLR 1 374 0 6 1159 2046 202 42 12 chr9 75300437 75300837 -48775335 - MTD LTR MaLR 0 419 8 6 1159 381 93 0 0 chr9 75300955 75301009 -48775163 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 6 1159 449 252 62 68 chr9 75301225 75301387 -48774785 - RSINE1 SINE B4 0 165 5 6 1159 241 241 11 88 chr9 75301744 75301835 -48774337 - PB1D10 SINE Alu -31 86 3 6 1159 3098 137 16 14 chr9 75302690 75303178 -48772994 - RLTR19 LTR ERVK -1 498 10 6 1159 200 86 0 28 chr9 75303622 75303658 -48772514 + (CCCCG)n Simple_repeat Simple_repeat 5 39 0 6 1159 763 149 35 0 chr9 75304220 75304361 -48771811 - B1_Mus1 SINE Alu -1 147 2 6 1159 880 129 87 114 chr9 75304489 75304673 -48771499 - URR1A DNA MER1_type -40 186 8 6 1159 225 194 0 0 chr9 75305374 75305410 -48770762 - ID2 SINE ID 0 83 48 6 1159 271 329 0 25 chr9 75305490 75305571 -48770601 + RSINE1 SINE B4 39 117 -48 6 1159 425 246 52 17 chr9 75306386 75306502 -48769670 - PB1D7 SINE Alu 0 120 1 6 1159 561 224 17 25 chr9 75306709 75306828 -48769344 + B3 SINE B2 98 215 -1 6 1159 293 266 7 7 chr9 75306813 75306851 -48769321 + ORR1B1-int LTR MaLR 611 648 -861 6 1159 1106 82 0 0 chr9 75306851 75306997 -48769175 + B1_Mus2 SINE Alu 2 147 0 6 1159 419 146 0 24 chr9 75307010 75307094 -48769078 + GA-rich Low_complexity Low_complexity 3 84 0 6 1159 292 272 43 28 chr9 75307100 75307182 -48768990 - PB1D10 SINE Alu -231 83 1 6 1159 205 254 0 83 chr9 75307402 75307462 -48768710 + MIR SINE MIR 98 152 -56 6 1159 26 0 0 0 chr9 75307673 75307699 -48768473 + AT_rich Low_complexity Low_complexity 1 26 0 6 1159 438 86 0 4 chr9 75307711 75307776 -48768396 - B2_Mm2 SINE B2 -107 109 47 6 1159 1286 75 12 6 chr9 75307793 75307966 -48768206 - B2_Mm1t SINE B2 -18 175 2 6 1159 207 0 0 0 chr9 75308163 75308186 -48767986 + (TTTTTA)n Simple_repeat Simple_repeat 5 27 0 6 1159 1179 54 0 26 chr9 75308186 75308337 -48767835 - B1_Mus1 SINE Alu 0 148 2 6 1159 747 276 87 26 chr9 75308387 75308651 -48767521 + B4A SINE B4 9 288 -4 6 1159 2250 182 103 46 chr9 75309091 75309632 -48766540 - RMER15 LTR ERVL -2 573 2 6 1159 843 215 28 6 chr9 75309872 75310050 -48766122 - B3A SINE B2 -16 182 1 6 1159 226 260 160 69 chr9 75310120 75310223 -48765949 - PB1D7 SINE Alu -1 116 1 6 1159 513 309 35 42 chr9 75310304 75310446 -48765726 + RSINE1 SINE B4 12 152 -13 6 1159 229 148 31 62 chr9 75310612 75310677 -48765495 + (CTTTG)n Simple_repeat Simple_repeat 5 67 0 6 1159 292 218 128 73 chr9 75311431 75311540 -48764632 + B1_Mus1 SINE Alu 33 147 -1 6 1159 495 0 0 0 chr9 75312965 75313020 -48763152 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1159 25 65 0 0 chr9 75313260 75313306 -48762866 + AT_rich Low_complexity Low_complexity 1 46 0 6 1159 552 195 7 102 chr9 75313609 75313746 -48762426 - B1_Mur1 SINE Alu -24 125 2 6 1159 566 171 9 54 chr9 75313777 75313888 -48762284 - U6 snRNA snRNA 0 107 2 6 1159 218 139 0 27 chr9 75314434 75314471 -48761701 + B2_Mm2 SINE B2 2 37 -158 7 1159 296 194 32 0 chr9 75314695 75314757 -48761415 - MLT1C LTR MaLR -337 130 67 7 1159 1102 236 58 58 chr9 75314775 75315390 -48760782 - RLTR31_Mur LTR ERVK 0 553 1 7 1159 1102 106 59 43 chr9 75315493 75315680 -48760492 - B2_Mm2 SINE B2 -4 191 2 7 1159 836 199 10 25 chr9 75315737 75315933 -48760239 - B3A SINE B2 -3 195 3 7 1159 399 21 0 0 chr9 75316102 75316150 -48760022 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1159 250 285 39 50 chr9 75316497 75316615 -48759557 - PB1D10 SINE Alu -18 130 18 7 1159 209 123 0 66 chr9 75316677 75316738 -48759434 + T-rich Low_complexity Low_complexity 1 57 0 7 1159 688 127 0 10 chr9 75316738 75316841 -48759331 - B1_Mur3 SINE Alu 0 149 48 7 1159 547 231 26 0 chr9 75316865 75316982 -48759190 - PB1D7 SINE Alu 0 120 1 7 1159 287 275 77 0 chr9 75317163 75317254 -48758918 - PB1D10 SINE Alu -2 115 18 7 1159 836 43 43 7 chr9 75317267 75317406 -48758766 + (TCCC)n Simple_repeat Simple_repeat 1 144 0 7 1159 1321 91 28 0 chr9 75317425 75317601 -48758571 - B2_Mm2 SINE B2 -14 181 1 7 1159 1145 36 43 0 chr9 75317874 75318013 -48758159 + B1_Mus1 SINE Alu 2 146 -2 7 1159 777 186 21 0 chr9 75318051 75318191 -48757981 - B1_Mus2 SINE Alu 0 147 5 7 1159 198 0 0 0 chr9 75318202 75318224 -48757948 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 7 1159 398 330 135 9 chr9 75318224 75318453 -48757719 - L1MD LINE L1 -2629 3517 3260 7 1159 678 187 32 0 chr9 75318458 75318581 -48757591 + RSINE1 SINE B4 3 129 -36 7 1159 450 278 240 38 chr9 75319106 75319398 -48756774 - MLT1F1 LTR MaLR -44 525 175 7 1159 259 261 145 92 chr9 75319468 75319599 -48756573 - PB1D10 SINE Alu -11 138 1 7 1159 518 254 86 27 chr9 75319752 75319938 -48756234 + B3A SINE B2 1 197 -1 7 1159 430 188 153 0 chr9 75320875 75320960 -48755212 - B3 SINE B2 -118 98 1 7 1159 229 182 73 0 chr9 75321252 75321307 -48754865 - PB1 SINE Alu -68 59 1 7 1159 1008 238 5 14 chr9 75321329 75321546 -48754626 - B3 SINE B2 -1 215 1 7 1159 854 29 0 0 chr9 75321771 75321875 -48754297 - B1_Mus2 SINE Alu 0 147 44 7 1159 303 194 0 46 chr9 75321829 75321894 -48754278 - 4.5SRNA scRNA scRNA -8 86 25 7 1159 851 239 16 16 chr9 75322278 75322311 -48753861 - B3A SINE B2 -15 183 148 7 1159 1266 83 0 3 chr9 75322311 75322628 -48753544 + (TG)n Simple_repeat Simple_repeat 1 315 0 7 1159 851 239 16 16 chr9 75322628 75322775 -48753397 - B3A SINE B2 -51 147 1 7 1159 552 281 39 13 chr9 75322892 75323047 -48753125 - RSINE1 SINE B4 -6 159 1 7 1159 342 0 0 0 chr9 75323047 75323085 -48753087 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1159 1453 238 89 25 chr9 75323119 75323512 -48752660 - Lx6 LINE L1 -27 7433 7016 7 1159 264 59 0 0 chr9 75323572 75323606 -48752566 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1159 273 318 0 0 chr9 75323608 75323674 -48752498 - ID4 SINE ID -13 70 5 7 1159 531 45 0 0 chr9 75323890 75323956 -48752216 + (TC)n Simple_repeat Simple_repeat 2 67 0 7 1159 1134 89 7 0 chr9 75323959 75324105 -48752067 - B1_Mus2 SINE Alu 0 147 1 7 1159 389 189 0 51 chr9 75324533 75324611 -48751561 - ID SINE ID -150 74 1 7 1159 224 30 0 29 chr9 75324708 75324742 -48751430 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 7 1159 1204 40 0 13 chr9 75324750 75324900 -48751272 - B1_Mus1 SINE Alu 0 148 1 7 1159 1142 200 124 63 chr9 75325019 75325366 -48750806 - ORR1D2 LTR MaLR -2 368 1 7 1159 417 244 98 38 chr9 75325415 75325547 -48750625 + B1_Mur1 SINE Alu 9 148 -1 7 1159 431 187 25 116 chr9 75325551 75325672 -48750500 - ID_B1 SINE B4 -13 211 102 7 1159 800 94 124 8 chr9 75325942 75326071 -48750101 - B1_Mus1 SINE Alu -3 145 2 7 1159 22 0 0 0 chr9 75326656 75326678 -48749494 + AT_rich Low_complexity Low_complexity 1 22 0 7 1159 386 230 113 0 chr9 75326944 75327053 -48749119 - B1F SINE Alu -20 129 9 7 1159 330 277 70 51 chr9 75327695 75327718 -48748454 - RSINE1 SINE B4 -4 161 133 7 1159 396 0 0 0 chr9 75327718 75327762 -48748410 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1159 330 277 70 51 chr9 75327762 75327894 -48748278 - RSINE1 SINE B4 -33 132 4 7 1159 202 164 35 35 chr9 75327894 75327951 -48748221 + (TTA)n Simple_repeat Simple_repeat 2 58 0 7 1159 1403 85 27 0 chr9 75328191 75328379 -48747793 + B2_Mm1t SINE B2 1 193 0 7 1159 249 306 120 51 chr9 75328896 75329013 -48747159 - PB1 SINE Alu -2 125 1 7 1159 1210 38 138 0 chr9 75329062 75329221 -48746951 - B2_Mm2 SINE B2 -14 181 1 7 1159 24 0 0 0 chr9 75329225 75329249 -48746923 + AT_rich Low_complexity Low_complexity 1 24 0 7 1159 211 189 0 0 chr9 75329380 75329417 -48746755 + GA-rich Low_complexity Low_complexity 2 38 0 7 1159 1589 138 81 18 chr9 75329668 75329940 -48746232 + RMER13A LTR ERVK 67 355 -505 7 1159 303 237 25 50 chr9 75329940 75330020 -48746152 + L1MEg LINE L1 1879 1956 -4128 7 1159 500 192 143 23 chr9 75330103 75330236 -48745936 + B1F1 SINE Alu 1 149 0 7 1159 278 105 0 0 chr9 75330385 75330423 -48745749 + B2_Mm2 SINE B2 2 39 -156 7 1159 245 301 40 59 chr9 75330418 75330570 -48745602 + LTRIS3 LTR ERV1 298 446 -66 7 1159 3516 23 5 0 chr9 75331520 75331914 -48744258 + MTA_Mm LTR MaLR 1 396 0 7 1159 494 263 193 33 chr9 75331999 75332180 -48743992 - B3 SINE B2 -6 210 1 7 1159 200 35 35 0 chr9 75332713 75332742 -48743430 + (TATG)n Simple_repeat Simple_repeat 2 31 0 7 1159 180 0 0 0 chr9 75332743 75332763 -48743409 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 7 1159 477 226 10 0 chr9 75332763 75332865 -48743307 - PB1D9 SINE Alu -13 107 5 7 1159 341 238 22 16 chr9 75333324 75333416 -48742756 + B1F SINE Alu 1 86 -34 7 1159 307 345 36 7 chr9 75333803 75333943 -48742229 - MLT1A LTR MaLR -227 147 4 7 1159 290 284 10 19 chr9 75334513 75334617 -48741555 - MLT1A LTR MaLR -271 103 1 7 1159 571 177 99 8 chr9 75334975 75335106 -48741066 - RMER4B LTR ERVK -365 220 78 7 1159 1480 54 0 16 chr9 75335109 75335297 -48740875 - B2_Mm2 SINE B2 -8 187 3 7 1159 453 198 66 0 chr9 75335337 75335428 -48740744 - MurERV4-int LTR ERVK 0 5260 5164 7 1159 708 260 39 0 chr9 75335689 75335870 -48740302 - MurERV4-int LTR ERVK -4741 519 332 7 1159 313 241 33 33 chr9 75336193 75336283 -48739889 - RMER4B LTR ERVK -150 435 346 7 1159 2581 33 16 28 chr9 75336310 75336665 -48739507 + RLTR10B2 LTR ERVK 1 376 -14 7 1159 2230 318 57 27 chr9 75336665 75337763 -48738409 - RodERV21-int LTR ERV1 -236 4755 3625 7 1159 316 157 23 31 chr9 75338520 75338620 -48737552 - MuLV-int LTR ERV1 -2657 4949 4830 7 1159 328 303 53 45 chr9 75339050 75339307 -48736865 - MER52-int LTR ERV1 -1973 5118 4877 7 1159 307 375 9 9 chr9 75339554 75339780 -48736392 - MER52-int LTR ERV1 -3906 3695 3470 7 1159 434 327 47 40 chr9 75340003 75340407 -48735765 - RodERV21-int LTR ERV1 -3017 4074 3668 7 1159 3225 44 15 0 chr9 75340421 75340811 -48735361 - MTA_Mm LTR MaLR 0 396 1 7 1159 1075 78 28 0 chr9 75340830 75340972 -48735200 - B1_Mus1 SINE Alu 0 148 3 7 1159 760 201 57 48 chr9 75341138 75341347 -48734825 - RodERV21-int LTR ERV1 -2273 2718 2508 7 1159 845 224 84 43 chr9 75341590 75341821 -48734351 - MurERV4-int LTR ERVK -5004 256 2 7 1159 823 269 74 98 chr9 75341830 75341848 -48734324 - RMER4B LTR ERVK -16 450 431 7 1159 200 34 0 33 chr9 75341848 75341878 -48734294 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 7 1159 947 226 70 53 chr9 75341878 75342320 -48733852 - RMER4B LTR ERVK -36 430 1 7 1159 1700 125 73 20 chr9 75342654 75342956 -48733216 + ORR1A3 LTR MaLR 1 318 -8 7 1159 1378 149 89 4 chr9 75343397 75343666 -48732506 + ORR1C1 LTR MaLR 5 296 -82 7 1159 574 196 156 12 chr9 75344702 75344862 -48731310 - B3 SINE B2 -4 212 30 7 1159 928 138 14 14 chr9 75344868 75345015 -48731157 - B1_Mur4 SINE Alu -1 149 3 7 1159 1396 72 11 16 chr9 75345596 75345781 -48730391 - B2_Mm1t SINE B2 -8 185 2 7 1159 466 291 56 7 chr9 75346906 75347048 -48729124 - B1F SINE Alu 0 149 1 7 1159 1004 188 99 0 chr9 75348332 75348524 -48727648 + B3 SINE B2 1 211 -5 7 1159 1442 65 16 11 chr9 75349426 75349612 -48726560 + B2_Mm2 SINE B2 1 187 -8 7 1159 450 0 0 0 chr9 75349630 75349680 -48726492 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1159 299 202 83 0 chr9 75350963 75351047 -48725125 - BC1_Mm scRNA scRNA -37 115 25 7 1159 530 245 32 32 chr9 75351210 75351366 -48724806 - RSINE1 SINE B4 -8 157 2 7 1159 400 241 26 26 chr9 75351384 75351499 -48724673 + PB1D7 SINE Alu 6 120 0 7 1159 630 227 97 10 chr9 75353040 75353236 -48722936 + ID_B1 SINE B4 2 214 -10 7 1159 275 305 38 9 chr9 75353290 75353396 -48722776 + PB1 SINE Alu 4 112 -15 7 1159 328 297 27 9 chr9 75353461 75353573 -48722599 + L1M4 LINE L1 5601 5714 -464 7 1159 1428 72 0 6 chr9 75353609 75353790 -48722382 + B2_Mm2 SINE B2 2 181 -14 7 1159 1664 16 5 20 chr9 75353790 75353985 -48722187 + B2_Mm1a SINE B2 2 193 0 7 1159 1208 61 0 0 chr9 75353998 75354146 -48722026 + B1_Mus1 SINE Alu 1 148 0 7 1159 621 195 196 24 chr9 75354175 75354343 -48721829 - B3 SINE B2 -19 197 1 7 1159 923 257 108 0 chr9 75354656 75354905 -48721267 - B4A SINE B4 -16 276 1 7 1159 25 0 0 0 chr9 75354911 75354936 -48721236 + AT_rich Low_complexity Low_complexity 1 25 0 7 1159 616 252 35 0 chr9 75354999 75355142 -48721030 + B3A SINE B2 3 150 -48 7 1159 209 322 53 11 chr9 75355585 75355679 -48720493 - L2 LINE L2 -687 2732 2635 8 1159 729 145 0 0 chr9 75355703 75355827 -48720345 - B1_Mus1 SINE Alu -17 131 8 8 1159 396 176 44 81 chr9 75355713 75355836 -48720336 - MT2B LTR ERVL -323 278 159 8 1159 612 230 73 124 chr9 75355836 75356054 -48720118 - ID_B1 SINE B4 -15 209 3 8 1159 396 176 44 81 chr9 75356054 75356066 -48720106 - MT2B LTR ERVL -443 158 148 8 1159 297 245 111 10 chr9 75356067 75356166 -48720006 - PB1D9 SINE Alu -9 111 3 8 1159 241 306 56 0 chr9 75356209 75356281 -48719891 - RSINE1 SINE B4 -5 160 85 8 1159 357 24 0 0 chr9 75356601 75356643 -48719529 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1159 206 32 32 0 chr9 75356643 75356673 -48719499 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1159 589 289 6 43 chr9 75356683 75356846 -48719326 + RSINE1 SINE B4 3 159 -6 8 1159 232 289 132 11 chr9 75356945 75357036 -48719136 + ID_B1 SINE B4 116 217 -7 8 1159 388 148 21 32 chr9 75357328 75357421 -48718751 + B1_Mur4 SINE Alu 35 149 -1 8 1159 205 0 114 0 chr9 75357441 75357476 -48718696 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1159 253 301 122 38 chr9 75357512 75357799 -48718373 + L1MC3 LINE L1 5634 5944 -1841 8 1159 754 56 2 1 chr9 75357860 75357975 -48718197 + B1_Mm SINE Alu 1 116 -33 8 1159 670 146 211 0 chr9 75358166 75358289 -48717883 + B1_Mur4 SINE Alu 2 150 0 8 1159 1320 85 10 21 chr9 75358379 75358572 -48717600 - B2_Mm1t SINE B2 -1 192 2 8 1159 1189 68 0 0 chr9 75358602 75358749 -48717423 - B1_Mus1 SINE Alu 0 148 2 8 1159 517 246 77 0 chr9 75359987 75360117 -48716055 + RSINE1 SINE B4 2 141 -24 8 1159 421 286 84 0 chr9 75360420 75360539 -48715633 + RSINE1 SINE B4 4 132 -33 8 1159 270 164 0 37 chr9 75360539 75360621 -48715551 + GA-rich Low_complexity Low_complexity 3 81 0 8 1159 749 179 149 0 chr9 75361027 75361195 -48714977 + B3 SINE B2 4 196 -20 8 1159 790 264 16 6 chr9 75361430 75361613 -48714559 - B3 SINE B2 -30 186 2 8 1159 251 228 171 38 chr9 75361979 75362024 -48714148 + B1_Mur1 SINE Alu 31 88 -61 8 1159 1226 62 0 0 chr9 75362024 75362170 -48714002 + B1_Mus1 SINE Alu 2 147 -1 8 1159 251 228 171 38 chr9 75362170 75362229 -48713943 + B1_Mur1 SINE Alu 89 149 0 8 1159 1131 97 0 0 chr9 75362283 75362438 -48713734 - B2_Mm2 SINE B2 -39 156 2 8 1159 384 262 18 18 chr9 75362456 75362565 -48713607 - B3A SINE B2 -3 195 87 8 1159 701 196 48 20 chr9 75362638 75362784 -48713388 - B1_Mur4 SINE Alu 0 150 1 8 1159 342 206 216 0 chr9 75363114 75363216 -48712956 - PB1 SINE Alu -3 124 1 8 1159 1149 74 0 0 chr9 75364522 75364661 -48711511 + B1_Mus1 SINE Alu 1 139 -9 8 1159 248 0 0 30 chr9 75364661 75364694 -48711478 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1159 387 250 0 45 chr9 75364792 75364880 -48711292 - PB1D10 SINE Alu 0 117 34 8 1159 524 24 12 35 chr9 75365018 75365103 -48711069 + (CA)n Simple_repeat Simple_repeat 1 83 0 8 1159 21 57 0 0 chr9 75365471 75365506 -48710666 + AT_rich Low_complexity Low_complexity 1 35 0 8 1159 632 176 8 0 chr9 75365512 75365631 -48710541 - B1F2 SINE Alu 0 149 30 8 1160 316 214 135 0 chr9 75366511 75366600 -48709572 - PB1D9 SINE Alu -14 106 6 8 1160 348 286 0 58 chr9 75366973 75367077 -48709095 - PB1D9 SINE Alu -13 107 10 8 1160 7957 25 12 2 chr9 75367084 75368002 -48708170 - L1Md_F2 LINE L1 -2 6580 5654 8 1160 571 253 156 53 chr9 75368018 75368084 -48708088 + L1M2 LINE L1 4252 4329 -1814 8 1160 234 0 0 0 chr9 75368084 75368110 -48708062 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1160 1742 21 0 0 chr9 75368119 75368312 -48707860 - B2_Mm1t SINE B2 0 193 1 8 1160 571 253 156 53 chr9 75368312 75368341 -48707831 + L1M2 LINE L1 4338 4365 -1778 8 1160 1199 104 54 21 chr9 75368341 75368527 -48707645 + B2_Mm1t SINE B2 2 193 0 8 1160 591 255 150 51 chr9 75368527 75368903 -48707269 + L1M2 LINE L1 4366 4777 -1363 8 1160 410 324 0 0 chr9 75368955 75369128 -48707044 + GA-rich Low_complexity Low_complexity 2 174 0 8 1160 652 303 60 18 chr9 75369130 75369412 -48706760 + L1M2 LINE L1 4879 5172 -971 8 1160 305 242 175 0 chr9 75369415 75369535 -48706637 + L1_Mur3 LINE L1 5265 5405 -475 8 1160 855 149 202 29 chr9 75369706 75369879 -48706293 - B3 SINE B2 -12 204 2 8 1160 687 224 89 80 chr9 75370095 75370308 -48705864 - B3 SINE B2 0 216 2 8 1160 322 277 10 21 chr9 75370723 75370819 -48705353 + L1MA8 LINE L1 6197 6291 0 8 1160 771 148 22 0 chr9 75371547 75371682 -48704490 + Lx6 LINE L1 7312 7449 -11 8 1160 241 272 24 24 chr9 75371689 75371772 -48704400 + ID2 SINE ID 1 83 0 8 1160 556 301 106 61 chr9 75371936 75372361 -48703811 + L1MB8 LINE L1 4561 5004 -1142 8 1160 530 237 16 41 chr9 75372361 75372484 -48703688 + PB1D7 SINE Alu 1 120 0 8 1160 642 267 84 47 chr9 75372660 75372935 -48703237 + L1MB8 LINE L1 5869 6153 -25 8 1160 341 239 207 60 chr9 75373049 75373165 -48703007 - B3A SINE B2 -65 133 1 8 1160 793 139 30 42 chr9 75373544 75373709 -48702463 - B2_Mm2 SINE B2 -9 186 24 8 1160 215 234 196 31 chr9 75375727 75375824 -48700348 + B3A SINE B2 71 183 -15 8 1160 817 235 26 31 chr9 75375997 75376190 -48699982 - B3A SINE B2 -4 194 3 8 1160 1087 43 41 28 chr9 75376357 75376502 -48699670 - B1_Mus2 SINE Alu 0 147 1 8 1160 48 18 0 0 chr9 75376772 75376827 -48699345 + AT_rich Low_complexity Low_complexity 1 55 0 8 1160 207 0 0 0 chr9 75377503 75377526 -48698646 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1160 409 319 111 0 chr9 75377552 75377696 -48698476 - RSINE1 SINE B4 -2 163 4 8 1160 778 196 0 27 chr9 75377705 75377852 -48698320 - B1_Mus1 SINE Alu 0 148 6 8 1160 350 274 35 161 chr9 75377852 75377877 -48698295 - B4 SINE B4 -67 223 74 8 1160 232 361 6 25 chr9 75377975 75378134 -48698038 + MurSatRep1 Unknown Unknown 148 303 -1834 8 1160 186 133 0 0 chr9 75378655 75378685 -48697487 + (GGA)n Simple_repeat Simple_repeat 1 30 0 8 1160 244 194 90 0 chr9 75378907 75378974 -48697198 + MER20 DNA MER1_type 115 187 -32 8 1160 262 260 0 0 chr9 75379196 75379246 -48696926 + tRNA-Ala-GCA tRNA tRNA 19 68 -7 8 1160 977 221 8 38 chr9 75379519 75379783 -48696389 + MER47A DNA MER2_type 94 349 -17 8 1160 661 241 74 74 chr9 75380881 75381029 -48695143 + B3 SINE B2 1 151 -65 8 1160 2996 43 52 0 chr9 75381029 75381398 -48694774 + RLTR10 LTR ERVK 1 388 -2 8 1160 661 241 74 74 chr9 75381398 75381464 -48694708 + B3 SINE B2 152 215 -1 8 1160 506 287 0 30 chr9 75381553 75381686 -48694486 - B1F2 SINE Alu -19 130 2 8 1160 2894 190 68 46 chr9 75382011 75382156 -48694016 - Lx7 LINE L1 -203 7493 7328 8 1160 299 25 0 24 chr9 75382156 75382197 -48693975 + (CAAAC)n Simple_repeat Simple_repeat 5 44 0 8 1160 2894 190 68 46 chr9 75382197 75382730 -48693442 - Lx7 LINE L1 -369 7327 6800 8 1160 1954 179 72 5 chr9 75382730 75383117 -48693055 + MTC LTR MaLR 1 413 -8 8 1160 1551 173 8 15 chr9 75383126 75383390 -48692782 - Lx7 LINE L1 -897 6799 6538 8 1160 595 210 108 91 chr9 75383908 75384046 -48692126 + L1MA5 LINE L1 5838 5966 -334 8 1160 1431 84 16 16 chr9 75384046 75384240 -48691932 - B2_Mm2 SINE B2 -1 194 1 8 1160 595 210 108 91 chr9 75384240 75384342 -48691830 + L1MA5 LINE L1 5967 6082 -218 8 1160 455 265 116 12 chr9 75384353 75384517 -48691655 + MER58A DNA MER1_type 43 223 -1 8 1160 222 184 0 0 chr9 75384961 75384999 -48691173 + C-rich Low_complexity Low_complexity 4 41 0 8 1160 953 163 52 96 chr9 75385072 75385344 -48690828 + RMER17C-int LTR ERVK 2607 2866 -372 8 1160 360 0 0 0 chr9 75385344 75385384 -48690788 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1160 296 251 30 80 chr9 75385458 75385597 -48690575 + RMER17C-int LTR ERVK 4236 4317 -1820 8 1160 1386 179 72 120 chr9 75385643 75386061 -48690111 + RMER10B LTR ERVL 1 398 0 8 1160 216 226 55 36 chr9 75386188 75386243 -48689929 - PB1D10 SINE Alu -8 109 54 8 1160 214 234 98 61 chr9 75386346 75386428 -48689744 + B3 SINE B2 1 85 -131 8 1160 379 275 73 0 chr9 75386360 75386469 -48689703 + RSINE1 SINE B4 12 128 -37 8 1160 344 286 206 20 chr9 75386816 75386914 -48689258 + L2 LINE L2 2321 2437 -982 8 1160 966 130 13 33 chr9 75386914 75387065 -48689107 + B1_Mur4 SINE Alu 3 150 0 8 1160 344 286 206 20 chr9 75387065 75387219 -48688953 + L2 LINE L2 2438 2620 -799 8 1160 791 234 153 22 chr9 75387440 75387795 -48688377 - L1MD2 LINE L1 -25 6334 5928 8 1160 523 252 41 0 chr9 75387799 75387922 -48688250 + B1F2 SINE Alu 1 128 -21 8 1160 316 0 0 43 chr9 75387929 75387975 -48688197 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1160 362 281 155 34 chr9 75387990 75388122 -48688050 - L1MD2 LINE L1 -462 5897 5736 8 1160 330 271 0 0 chr9 75388122 75388192 -48687980 - ID4 SINE ID -13 70 1 8 1160 362 281 155 34 chr9 75388192 75388265 -48687907 - L1MD2 LINE L1 -624 5735 5667 8 1160 298 339 55 11 chr9 75388306 75388488 -48687684 + L2 LINE L2 2862 3051 -368 8 1160 546 158 11 0 chr9 75388861 75388956 -48687216 - B1_Mur1 SINE Alu -24 125 30 8 1160 229 211 0 17 chr9 75388960 75389018 -48687154 - B1_Mur1 SINE Alu 0 149 93 8 1160 25 31 0 0 chr9 75389023 75389055 -48687117 + AT_rich Low_complexity Low_complexity 1 32 0 8 1160 359 287 123 20 chr9 75389056 75389202 -48686970 + RSINE1 SINE B4 2 162 -3 8 1160 267 294 63 113 chr9 75391147 75391289 -48684883 - B1F1 SINE Alu -12 137 3 8 1160 247 254 0 17 chr9 75391328 75391388 -48684784 - ID_B1 SINE B4 -68 156 98 8 1160 513 282 25 13 chr9 75391486 75391644 -48684528 + B3 SINE B2 1 160 -56 8 1160 955 202 17 0 chr9 75391655 75391828 -48684344 - B3 SINE B2 -39 177 2 8 1160 339 167 68 45 chr9 75392223 75392311 -48683861 + B3A SINE B2 59 148 -50 8 1160 183 80 0 0 chr9 75392311 75392336 -48683836 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 8 1160 201 132 0 0 chr9 75392903 75392941 -48683231 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 8 1160 1671 16 21 0 chr9 75393222 75393410 -48682762 - B2_Mm1a SINE B2 0 193 2 8 1160 541 255 7 21 chr9 75393710 75393854 -48682318 + B1F2 SINE Alu 1 142 -7 8 1160 579 183 43 0 chr9 75394039 75394154 -48682018 - ID_B1 SINE B4 -3 221 102 9 1160 246 304 42 62 chr9 75394045 75394189 -48681983 + YREP_Mm Unknown Unknown 186 326 -1486 9 1160 1142 56 28 0 chr9 75394494 75394636 -48681536 + B1_Mus1 SINE Alu 2 147 -1 9 1160 230 164 0 88 chr9 75394637 75394717 -48681455 + A-rich Low_complexity Low_complexity 4 76 0 9 1160 243 0 0 0 chr9 75395777 75395804 -48680368 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 9 1160 378 260 0 48 chr9 75395804 75395909 -48680263 - RSINE1 SINE B4 -9 156 57 9 1160 1432 89 0 5 chr9 75396115 75396306 -48679866 + B2_Mm2 SINE B2 2 191 -4 9 1160 951 131 13 27 chr9 75396345 75396494 -48679678 + B1_Mus2 SINE Alu 1 147 0 9 1160 545 298 55 10 chr9 75396537 75396814 -48679358 + L1MA6 LINE L1 5992 6283 -17 9 1160 26 50 0 0 chr9 75397688 75397728 -48678444 + AT_rich Low_complexity Low_complexity 1 40 0 9 1160 21 0 0 0 chr9 75398035 75398056 -48678116 + AT_rich Low_complexity Low_complexity 1 21 0 9 1160 813 195 115 0 chr9 75398123 75398297 -48677875 + B3A SINE B2 3 196 -2 9 1160 180 111 0 0 chr9 75398531 75398558 -48677614 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 9 1160 704 262 23 0 chr9 75398592 75398764 -48677408 + B3 SINE B2 27 202 -14 9 1160 322 206 152 76 chr9 75398764 75398869 -48677303 + PB1D7 SINE Alu 7 119 -1 9 1160 287 267 166 29 chr9 75399573 75399712 -48676460 + RSINE1 SINE B4 2 159 -6 9 1160 233 128 0 41 chr9 75399731 75399780 -48676392 + PB1D9 SINE Alu 74 120 0 9 1160 549 275 22 17 chr9 75399781 75399962 -48676210 + B3A SINE B2 1 182 -16 9 1160 205 108 54 0 chr9 75399970 75400007 -48676165 + CT-rich Low_complexity Low_complexity 3 41 0 9 1160 261 273 0 0 chr9 75400745 75400811 -48675361 - PB1D10 SINE Alu -43 74 9 9 1160 373 252 110 0 chr9 75400841 75400968 -48675204 + B1F1 SINE Alu 1 141 -8 9 1160 394 274 234 27 chr9 75401267 75401451 -48674721 + ID_B1 SINE B4 2 223 -1 9 1160 505 287 12 25 chr9 75401472 75401633 -48674539 + RSINE1 SINE B4 7 165 0 9 1160 342 237 93 36 chr9 75401689 75401829 -48674343 + B1F SINE Alu 1 148 -1 9 1160 321 188 16 0 chr9 75401835 75401899 -48674273 + L1MB8 LINE L1 5874 5938 -240 9 1160 295 169 61 15 chr9 75401922 75401988 -48674184 + ID_B1 SINE B4 151 219 -5 9 1160 1190 61 0 0 chr9 75402073 75402220 -48673952 + B1_Mus2 SINE Alu 1 147 0 9 1160 201 147 0 0 chr9 75402220 75402254 -48673918 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1160 555 230 95 0 chr9 75402312 75402438 -48673734 + RSINE1 SINE B4 6 143 -22 9 1160 240 59 0 0 chr9 75402450 75402484 -48673688 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1160 726 242 62 53 chr9 75402666 75402893 -48673279 + B4A SINE B4 2 230 -62 9 1160 777 203 0 0 chr9 75402897 75403035 -48673137 + B1F2 SINE Alu 6 143 -6 9 1160 465 250 28 35 chr9 75403405 75403550 -48672622 + B1F SINE Alu 5 148 -1 9 1160 211 238 15 60 chr9 75403559 75403626 -48672546 + ID_B1 SINE B4 90 153 -71 9 1160 5694 33 5 0 chr9 75403682 75404346 -48671826 + L1Md_T LINE L1 5913 6579 -3 9 1160 657 250 0 0 chr9 75404874 75405014 -48671158 + ID_B1 SINE B4 80 219 -5 9 1160 258 353 7 35 chr9 75404896 75405037 -48671135 - YREP_Mm Unknown Unknown -1516 296 160 9 1160 293 156 215 15 chr9 75405341 75405406 -48670766 - ID4 SINE ID -3 80 3 9 1160 320 169 303 0 chr9 75405981 75406070 -48670102 + PB1D10 SINE Alu 2 117 0 9 1160 243 0 0 0 chr9 75406377 75406404 -48669768 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1160 243 0 0 0 chr9 75407684 75407711 -48668461 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1160 765 265 30 30 chr9 75407857 75408059 -48668113 + ID_B1 SINE B4 1 202 -22 9 1160 294 29 0 0 chr9 75408074 75408109 -48668063 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1160 314 203 185 57 chr9 75408975 75409132 -48667040 - RMER1C Other Other -687 655 479 9 1160 21 36 0 0 chr9 75409154 75409182 -48666990 + AT_rich Low_complexity Low_complexity 1 28 0 9 1160 277 186 0 28 chr9 75409391 75409463 -48666709 + CT-rich Low_complexity Low_complexity 4 73 0 9 1160 230 116 0 23 chr9 75409529 75409556 -48666616 + (TA)n Simple_repeat Simple_repeat 1 27 0 9 1160 3362 31 8 5 chr9 75409556 75409950 -48666222 + MTA_Mm LTR MaLR 2 396 0 9 1160 230 116 0 23 chr9 75409950 75409966 -48666206 + (TA)n Simple_repeat Simple_repeat 1 16 0 9 1160 469 186 126 24 chr9 75409979 75410106 -48666066 - B1F2 SINE Alu -9 140 1 9 1160 218 357 76 18 chr9 75410177 75410348 -48665824 - MIR SINE MIR -6 256 76 9 1160 682 228 108 11 chr9 75410611 75410797 -48665375 - B3 SINE B2 -11 205 2 9 1160 508 266 0 59 chr9 75410810 75410946 -48665226 - ID_B1 SINE B4 -4 220 93 9 1160 237 167 0 20 chr9 75411072 75411121 -48665051 + B4A SINE B4 147 194 -98 9 1160 285 218 136 11 chr9 75411172 75411260 -48664912 + B3 SINE B2 112 210 -6 9 1160 525 104 0 0 chr9 75411265 75411342 -48664830 + (TCCC)n Simple_repeat Simple_repeat 2 78 0 9 1160 629 186 105 0 chr9 75411370 75411494 -48664678 + B1_Mur4 SINE Alu 5 141 -9 9 1160 225 300 42 14 chr9 75411512 75411583 -48664589 + B4 SINE B4 212 284 -8 9 1160 546 278 68 39 chr9 75412697 75412903 -48663269 - ID_B1 SINE B4 -12 212 1 9 1160 659 216 8 0 chr9 75414167 75414301 -48661871 - ID_B1 SINE B4 -9 215 81 9 1160 180 0 0 0 chr9 75414674 75414694 -48661478 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 1160 352 162 162 0 chr9 75414696 75414764 -48661408 - ID4 SINE ID -3 80 2 9 1160 210 312 156 0 chr9 75414899 75415008 -48661164 - MIR3 SINE MIR 0 208 83 9 1160 345 24 0 0 chr9 75415036 75415078 -48661094 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1160 232 267 20 7 chr9 75415136 75415226 -48660946 - MIRm SINE MIR -14 262 177 9 1160 1034 210 17 56 chr9 75415550 75415782 -48660390 - ID_B1 SINE B4 0 224 2 9 1160 405 308 73 32 chr9 75416002 75416220 -48659952 - MIRc SINE MIR -16 252 26 9 1160 387 83 0 0 chr9 75417886 75417946 -48658226 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 1160 322 296 158 5 chr9 75418883 75419073 -48657099 - MER63B DNA AcHobo -12 424 206 9 1160 246 222 31 16 chr9 75419128 75419192 -48656980 - ID_B1 SINE B4 -10 214 150 9 1160 1448 134 37 0 chr9 75419661 75419878 -48656294 - URR1B DNA MER1_type 0 225 1 9 1160 1460 223 90 23 chr9 75419964 75420309 -48655863 + MTEa LTR MaLR 12 379 0 9 1160 180 143 0 0 chr9 75420610 75420652 -48655520 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1160 604 254 67 51 chr9 75420798 75420993 -48655179 - B3A SINE B2 0 198 1 9 1160 407 203 27 0 chr9 75421143 75421217 -48654955 + ID4_ SINE ID 2 77 -6 9 1160 386 276 25 32 chr9 75421980 75422137 -48654035 + CYRA11_Mm Unknown Y-chromosome 157 312 -305 9 1160 1105 116 111 48 chr9 75422002 75422210 -48653962 - URR1A DNA MER1_type -5 221 1 9 1160 553 239 27 40 chr9 75422643 75422791 -48653381 + B1F1 SINE Alu 4 149 0 9 1160 1104 203 24 0 chr9 75422910 75423117 -48653055 + B3 SINE B2 1 212 -4 9 1160 444 274 10 0 chr9 75423166 75423268 -48652904 - PB1D10 SINE Alu -14 103 1 9 1160 180 0 54 54 chr9 75423504 75423541 -48652631 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 9 1160 384 182 0 0 chr9 75424690 75424778 -48651394 + GA-rich Low_complexity Low_complexity 2 89 0 9 1160 957 104 35 7 chr9 75425219 75425364 -48650808 + B1_Mur4 SINE Alu 2 150 0 9 1160 258 122 0 58 chr9 75425364 75425451 -48650721 + A-rich Low_complexity Low_complexity 1 82 0 9 1160 366 206 0 0 chr9 75425571 75425639 -48650533 + B3 SINE B2 17 84 -132 9 1160 888 220 65 0 chr9 75425669 75425869 -48650303 - B3 SINE B2 -3 213 1 9 1160 414 0 0 0 chr9 75425881 75425927 -48650245 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1160 420 55 0 0 chr9 75425927 75425982 -48650190 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 1160 236 352 57 0 chr9 75425982 75426087 -48650085 - B1F SINE Alu -13 136 26 9 1160 542 230 96 6 chr9 75426168 75426334 -48649838 + B3A SINE B2 1 181 -17 9 1160 459 0 0 0 chr9 75426379 75426430 -48649742 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1160 322 289 151 26 chr9 75426690 75426882 -48649290 - MER20 DNA MER1_type -3 216 1 9 1160 786 181 15 0 chr9 75427013 75427146 -48649026 - B1_Mus2 SINE Alu -8 139 5 9 1160 900 205 10 15 chr9 75427605 75427764 -48648408 + B3A SINE B2 1 160 -38 9 1160 405 0 0 0 chr9 75427764 75427809 -48648363 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 1160 900 205 10 15 chr9 75427809 75427847 -48648325 + B3A SINE B2 161 196 -2 9 1160 337 242 40 114 chr9 75427879 75427930 -48648242 + MER33 DNA MER1_type 13 52 -272 9 1160 1429 98 0 5 chr9 75427930 75428125 -48648047 + B2_Mm2 SINE B2 2 195 0 9 1160 337 242 40 114 chr9 75428125 75428222 -48647950 + MER33 DNA MER1_type 53 150 -174 9 1160 842 239 9 70 chr9 75428281 75428510 -48647662 - B3 SINE B2 0 216 2 9 1160 187 264 111 0 chr9 75428659 75428731 -48647441 + MIRc SINE MIR 37 116 -152 9 1160 518 279 28 14 chr9 75429403 75429545 -48646627 + B1F SINE Alu 6 149 0 9 1160 259 236 18 0 chr9 75429819 75429874 -48646298 - tRNA-Ala-GCY_ tRNA tRNA -16 59 4 1 1160 21 0 0 0 chr9 75429934 75429955 -48646217 + AT_rich Low_complexity Low_complexity 1 21 0 1 1160 757 246 28 6 chr9 75430816 75430992 -48645180 + B3A SINE B2 1 180 -18 1 1160 1143 248 43 40 chr9 75431013 75431151 -48645021 + Lx6 LINE L1 6069 6212 -838 1 1160 2324 68 6 105 chr9 75431151 75431514 -48644658 + ORR1A2 LTR MaLR 1 327 0 1 1160 1684 226 150 37 chr9 75431514 75432406 -48643766 + Lx6 LINE L1 6213 7460 0 1 1160 338 294 39 78 chr9 75432462 75432591 -48643581 + B1F2 SINE Alu 17 140 -9 1 1160 658 208 74 25 chr9 75433171 75433334 -48642838 - B3A SINE B2 -13 185 15 1 1160 460 279 0 0 chr9 75433353 75433464 -48642708 + MLT1F LTR MaLR 180 290 -258 1 1160 207 0 0 0 chr9 75433618 75433641 -48642531 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1160 613 228 112 58 chr9 75434536 75434741 -48641431 + B3 SINE B2 1 216 0 1 1160 473 229 219 8 chr9 75434756 75434879 -48641293 + B1F1 SINE Alu 1 149 0 1 1160 358 274 0 59 chr9 75434994 75435095 -48641077 + PB1D7 SINE Alu 19 113 -7 1 1160 485 288 108 79 chr9 75436065 75436158 -48640014 + MTE2a LTR MaLR 1 118 -301 1 1160 366 96 27 14 chr9 75436158 75436232 -48639940 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1160 650 264 38 105 chr9 75436232 75436545 -48639627 + MTE2a LTR MaLR 88 379 0 1 1160 522 240 32 0 chr9 75436607 75436732 -48639440 - B1F2 SINE Alu -16 133 5 1 1160 531 215 31 47 chr9 75436790 75436917 -48639255 - B1_Mur1 SINE Alu 0 149 25 1 1160 800 107 0 8 chr9 75437336 75437459 -48638713 + B1_Mus1 SINE Alu 1 122 -26 1 1160 383 227 0 0 chr9 75437607 75437682 -48638490 + ID4_ SINE ID 5 79 -4 1 1160 269 259 69 41 chr9 75437866 75438011 -48638161 + MTEb LTR MaLR 64 212 -167 1 1160 392 275 29 86 chr9 75438670 75438845 -48637327 + B4 SINE B4 1 165 -127 1 1160 352 282 7 95 chr9 75438835 75438972 -48637200 + RSINE1 SINE B4 17 141 -24 1 1160 237 267 0 0 chr9 75439043 75439103 -48637069 - B1F SINE Alu -7 142 83 1 1160 1572 199 95 3 chr9 75439208 75439546 -48636626 + ORR1D1 LTR MaLR 2 370 -4 1 1160 649 138 130 58 chr9 75439707 75439845 -48636327 + B1_Mus1 SINE Alu 1 148 0 1 1160 480 252 0 56 chr9 75439969 75440095 -48636077 - PB1D7 SINE Alu -1 119 1 1 1160 751 270 71 4 chr9 75440851 75441104 -48635068 + MTE2b LTR MaLR 105 374 -5 1 1160 195 191 15 31 chr9 75442088 75442153 -48634019 + GA-rich Low_complexity Low_complexity 5 68 0 1 1160 284 252 347 28 chr9 75442422 75442598 -48633574 - L1MC1 LINE L1 -8 6336 6105 1 1160 679 209 35 28 chr9 75443114 75443257 -48632915 - B1_Mur2 SINE Alu -5 144 1 1 1160 377 248 60 0 chr9 75443260 75443377 -48632795 - B1F SINE Alu 0 149 26 1 1160 451 329 29 0 chr9 75443746 75443883 -48632289 + ID_B1 SINE B4 83 223 -1 1 1160 203 79 0 26 chr9 75443895 75443934 -48632238 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1160 438 213 16 13 chr9 75443955 75444066 -48632106 + B1F SINE Alu 1 144 -5 1 1160 682 240 7 7 chr9 75444073 75444220 -48631952 + B1_Mur1 SINE Alu 2 148 -1 1 1160 486 248 61 23 chr9 75444228 75444360 -48631812 + ID_B1 SINE B4 88 224 0 1 1160 929 208 99 0 chr9 75444361 75444563 -48631609 + ID_B1 SINE B4 2 223 -1 1 1160 22 0 0 0 chr9 75445818 75445840 -48630332 + AT_rich Low_complexity Low_complexity 1 22 0 1 1160 250 247 40 27 chr9 75446875 75446950 -48629222 + MLT1E2 LTR MaLR 552 627 0 1 1160 233 241 193 25 chr9 75447021 75447140 -48629032 + LTR33 LTR ERVL 51 189 -326 1 1160 449 257 89 45 chr9 75447187 75447366 -48628806 + LTR33 LTR ERVL 326 512 -3 1 1160 196 341 0 54 chr9 75447704 75447797 -48628375 + L2b LINE L2 2308 2395 -1024 1 1160 198 283 16 32 chr9 75448431 75448493 -48627679 + L2b LINE L2 3314 3374 -1 1 1160 368 223 60 163 chr9 75449044 75449210 -48626962 - B1F SINE Alu 0 149 1 1 1160 300 221 79 88 chr9 75449187 75449212 -48626960 + PB1 SINE Alu 14 38 -89 1 1160 269 89 22 0 chr9 75449212 75449257 -48626915 + (TTA)n Simple_repeat Simple_repeat 1 46 0 1 1160 300 221 79 88 chr9 75449257 75449345 -48626827 + PB1 SINE Alu 39 126 -1 1 1160 477 206 0 119 chr9 75450080 75450100 -48626072 - ID_B1 SINE B4 0 224 99 1 1160 710 149 0 16 chr9 75450100 75450223 -48625949 - B1_Mur1 SINE Alu -11 138 18 1 1160 297 338 57 14 chr9 75450362 75450503 -48625669 + B1F SINE Alu 1 147 -2 1 1160 198 0 0 0 chr9 75450550 75450572 -48625600 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1160 243 88 0 0 chr9 75450674 75450708 -48625464 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 1 1160 1057 122 0 0 chr9 75450709 75450856 -48625316 - B1_Mus1 SINE Alu 0 148 2 1 1160 882 77 217 60 chr9 75450868 75451034 -48625138 - B2_Mm2 SINE B2 -2 193 2 1 1160 220 226 48 0 chr9 75451884 75451946 -48624226 - B1_Mur1 SINE Alu -11 138 74 1 1160 200 233 0 48 chr9 75452070 75452107 -48624065 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1 1160 902 200 91 11 chr9 75452107 75452153 -48624019 - B3 SINE B2 -11 205 154 1 1160 222 37 0 0 chr9 75452153 75452180 -48623992 + (TAGA)n Simple_repeat Simple_repeat 1 27 0 1 1160 902 200 91 11 chr9 75452180 75452320 -48623852 - B3 SINE B2 -63 153 4 1 1160 200 233 0 48 chr9 75452320 75452345 -48623827 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 1160 201 217 0 21 chr9 75452982 75453029 -48623143 + CT-rich Low_complexity Low_complexity 4 49 0 1 1160 536 235 59 0 chr9 75453056 75453175 -48622997 - B1F1 SINE Alu -19 130 5 1 1160 920 178 0 7 chr9 75453417 75453564 -48622608 - B1_Mur1 SINE Alu -2 147 2 1 1160 231 36 0 0 chr9 75453851 75453879 -48622293 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1160 183 80 0 0 chr9 75454166 75454191 -48621981 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1160 213 65 0 0 chr9 75454261 75454292 -48621880 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1160 605 284 0 0 chr9 75454299 75454433 -48621739 - B1F2 SINE Alu -10 139 6 1 1160 315 357 38 23 chr9 75454328 75454460 -48621712 - B4 SINE B4 -93 199 66 1 1160 200 31 62 0 chr9 75454461 75454493 -48621679 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1160 297 260 0 50 chr9 75454793 75454894 -48621278 + PB1D10 SINE Alu 22 117 0 1 1160 847 169 0 0 chr9 75454904 75455040 -48621132 + B1_Mus2 SINE Alu 2 137 -10 1 1160 205 113 0 70 chr9 75455064 75455121 -48621051 + (CCAA)n Simple_repeat Simple_repeat 1 53 0 1 1160 222 323 15 0 chr9 75455141 75455206 -48620966 + ID4 SINE ID 12 77 -6 1 1160 297 177 113 0 chr9 75455364 75455426 -48620746 + ID4 SINE ID 5 73 -10 1 1160 253 290 50 10 chr9 75455490 75455591 -48620581 + MER2 DNA MER2_type 172 276 -69 1 1160 603 184 9 0 chr9 75455916 75456030 -48620142 + B1_Mus1 SINE Alu 6 120 -28 1 1160 448 252 35 35 chr9 75456030 75456051 -48620121 + ID_B1 SINE B4 119 224 0 1 1160 450 0 0 0 chr9 75456051 75456101 -48620071 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 1 1160 383 271 130 8 chr9 75456262 75456385 -48619787 + Lx8 LINE L1 6477 6614 -859 1 1160 899 210 122 8 chr9 75456384 75456629 -48619543 + Lx8 LINE L1 6868 7140 -333 1 1160 25 31 0 0 chr9 75456760 75456792 -48619380 + AT_rich Low_complexity Low_complexity 1 32 0 1 1160 459 218 2 35 chr9 75456929 75457047 -48619125 - B1_Mur2 SINE Alu -10 139 5 1 1160 315 85 0 0 chr9 75457701 75457748 -48618424 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1160 21 0 0 0 chr9 75458159 75458180 -48617992 + AT_rich Low_complexity Low_complexity 1 21 0 1 1160 35 24 0 0 chr9 75458954 75458996 -48617176 + GC_rich Low_complexity Low_complexity 1 42 0 1 1160 380 330 0 9 chr9 75459898 75460005 -48616167 - PB1D10 SINE Alu -5 112 7 1 1160 394 335 35 0 chr9 75460525 75460695 -48615477 + B3A SINE B2 20 195 -3 1 1160 678 246 8 0 chr9 75461519 75461653 -48614519 + ID_B1 SINE B4 82 216 -8 1 1160 252 196 78 0 chr9 75461609 75461660 -48614512 + PB1D7 SINE Alu 65 119 -1 1 1160 453 289 8 0 chr9 75461692 75461828 -48614344 + B1F SINE Alu 6 142 -7 1 1160 699 217 0 7 chr9 75461844 75461988 -48614184 + B1_Mur2 SINE Alu 7 149 0 1 1160 235 302 35 47 chr9 75462034 75462146 -48614026 + B1_Mus1 SINE Alu 5 115 -2 1 1160 530 257 37 0 chr9 75462331 75462467 -48613705 - ID_B1 SINE B4 -4 220 80 1 1160 661 247 250 4 chr9 75462510 75462738 -48613434 - B4 SINE B4 -8 284 1 1 1160 726 210 29 0 chr9 75462993 75463131 -48613041 - B1_Mur4 SINE Alu -8 142 1 1 1160 308 295 149 14 chr9 75463472 75463613 -48612559 - Lx8 LINE L1 -326 7147 6988 1 1160 640 307 36 29 chr9 75463674 75463949 -48612223 + MLT1L LTR MaLR 325 601 -9 1 1160 1430 55 16 16 chr9 75464093 75464279 -48611893 - B2_Mm2 SINE B2 -9 186 1 1 1160 195 356 11 11 chr9 75464339 75464427 -48611745 + MIRb SINE MIR 111 198 -70 1 1160 359 320 10 0 chr9 75464794 75464891 -48611281 + ID_B1 SINE B4 93 190 -34 1 1160 431 153 10 0 chr9 75465100 75465198 -48610974 + CT-rich Low_complexity Low_complexity 2 100 0 1 1160 623 231 0 0 chr9 75465279 75465400 -48610772 - ID_B1 SINE B4 -4 220 100 1 1160 996 121 6 11 chr9 75465413 75465588 -48610584 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 1 1160 601 224 75 40 chr9 75465618 75465818 -48610354 - L1M4 LINE L1 -2437 3709 3503 1 1160 3379 174 77 204 chr9 75466055 75467241 -48608931 - RMER1B Other Other -1 1065 31 1 1160 279 113 348 17 chr9 75467404 75467516 -48608656 - B2_Mm2 SINE B2 0 195 47 1 1160 1251 113 11 0 chr9 75467571 75467748 -48608424 - B2_Mm1t SINE B2 -14 179 1 1 1160 387 242 0 0 chr9 75467773 75467872 -48608300 + CT-rich Low_complexity Low_complexity 4 102 0 1 1160 226 268 108 12 chr9 75467873 75467956 -48608216 - ID_B1 SINE B4 0 224 134 1 1160 521 255 39 0 chr9 75467992 75468145 -48608027 - L1M4 LINE L1 -2708 3438 3280 1 1160 2195 148 29 5 chr9 75468182 75468562 -48607610 + ORR1B1 LTR MaLR 1 389 -5 1 1160 309 195 83 25 chr9 75468567 75468688 -48607484 - L1M4 LINE L1 -2891 3255 3128 1 1160 1213 271 106 27 chr9 75468706 75469270 -48606902 + L1MC2 LINE L1 3541 4149 -1997 1 1160 637 252 138 0 chr9 75469401 75469611 -48606561 + L1MC2 LINE L1 5536 5774 -570 1 1160 315 0 0 0 chr9 75469652 75469687 -48606485 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1160 606 255 13 26 chr9 75469688 75469841 -48606331 - RSINE1 SINE B4 -13 152 2 1 1160 299 224 35 12 chr9 75469891 75469977 -48606195 + (CATATA)n Simple_repeat Simple_repeat 5 92 0 1 1160 266 246 31 0 chr9 75469977 75470042 -48606130 + L1MC2 LINE L1 5865 5931 -413 1 1160 240 35 0 0 chr9 75470470 75470499 -48605673 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1160 748 300 71 21 chr9 75470500 75470840 -48605332 + MLT1A0 LTR MaLR 9 365 0 1 1160 325 308 34 40 chr9 75470911 75471060 -48605112 - B1_Mur1 SINE Alu 0 149 2 1 1160 496 187 36 27 chr9 75471828 75471938 -48604234 + PB1D10 SINE Alu 5 115 -2 1 1160 279 275 176 0 chr9 75471950 75472081 -48604091 + ID_B1 SINE B4 1 154 -70 1 1160 735 255 25 25 chr9 75472107 75472304 -48603868 + B3A SINE B2 2 198 0 1 1160 414 0 0 0 chr9 75472661 75472707 -48603465 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1160 22 0 0 0 chr9 75473851 75473873 -48602299 + GC_rich Low_complexity Low_complexity 1 22 0 1 1160 396 0 0 0 chr9 75473991 75474035 -48602137 + (CTG)n Simple_repeat Simple_repeat 3 46 0 1 1160 998 209 5 10 chr9 75474840 75475043 -48601129 - B3 SINE B2 -11 205 4 1 1160 22 0 0 0 chr9 75475580 75475602 -48600570 + AT_rich Low_complexity Low_complexity 1 22 0 1 1160 1073 185 24 14 chr9 75475606 75475814 -48600358 - B3 SINE B2 -6 210 1 1 1160 492 169 74 25 chr9 75475930 75476051 -48600121 - ID_B1 SINE B4 0 224 98 1 1160 272 236 42 0 chr9 75476086 75476158 -48600014 - MER20 DNA MER1_type -44 175 101 1 1160 904 150 20 26 chr9 75476242 75476393 -48599779 - B1_Mur4 SINE Alu 0 150 1 1 1160 468 280 23 31 chr9 75476485 75476614 -48599558 + B1F1 SINE Alu 1 128 -21 1 1160 976 148 7 0 chr9 75476701 75476850 -48599322 - B1_Mur4 SINE Alu 0 150 1 1 1160 311 119 33 17 chr9 75476852 75476912 -48599260 - MTD LTR MaLR -356 63 3 1 1160 213 39 0 0 chr9 75476918 75476944 -48599228 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1 1160 282 286 130 11 chr9 75476944 75477036 -48599136 - PB1D10 SINE Alu -13 104 2 1 1160 244 262 65 65 chr9 75477039 75477194 -48598978 - L2 LINE L2 -614 2805 2651 1 1160 302 302 110 8 chr9 75477218 75477345 -48598827 - RMER30 DNA MER1_type -1 201 62 1 1160 890 55 92 30 chr9 75477514 75477645 -48598527 + B1_Mus1 SINE Alu 2 140 -8 1 1160 288 0 0 0 chr9 75477645 75477677 -48598495 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1160 1023 151 162 0 chr9 75478075 75478260 -48597912 + B3 SINE B2 1 215 -1 1 1160 514 308 34 0 chr9 75478302 75478448 -48597724 - RSINE1 SINE B4 -12 153 3 1 1160 346 257 118 9 chr9 75478455 75478565 -48597607 - ID_B1 SINE B4 -1 223 102 1 1160 189 0 0 0 chr9 75479620 75479641 -48596531 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1160 231 114 0 0 chr9 75479641 75479675 -48596497 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1160 29 28 0 0 chr9 75479675 75479711 -48596461 + AT_rich Low_complexity Low_complexity 1 36 0 1 1160 933 228 24 0 chr9 75480827 75481038 -48595134 + B3 SINE B2 1 216 0 1 1160 22 0 0 0 chr9 75481042 75481064 -48595108 + AT_rich Low_complexity Low_complexity 1 22 0 1 1160 773 216 144 0 chr9 75481164 75481358 -48594814 + ID_B1 SINE B4 2 223 -1 1 1160 333 167 0 57 chr9 75481505 75481575 -48594597 - MTD LTR MaLR 0 419 354 1 1160 2217 132 53 25 chr9 75481765 75482161 -48594011 - MTB_Mm LTR MaLR 0 407 1 1 1160 2069 229 83 9 chr9 75482194 75482735 -48593437 + RMER1C Other Other 754 1334 -8 1 1160 1272 210 125 12 chr9 75482743 75483080 -48593092 - MTD LTR MaLR -44 375 1 1 1160 729 242 101 15 chr9 75483650 75483918 -48592254 - B4 SINE B4 0 292 2 1 1160 1120 91 55 0 chr9 75484179 75484192 -48591980 - B2_Mm1t SINE B2 -19 174 162 1 1160 180 0 0 0 chr9 75484192 75484212 -48591960 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1160 1120 91 55 0 chr9 75484212 75484363 -48591809 - B2_Mm1t SINE B2 -32 161 2 1 1160 21 36 0 0 chr9 75484572 75484600 -48591572 + AT_rich Low_complexity Low_complexity 1 28 0 1 1160 238 224 52 13 chr9 75484643 75484720 -48591452 - PB1D7 SINE Alu -1 119 40 1 1160 207 226 32 21 chr9 75484729 75484824 -48591348 + (TATAA)n Simple_repeat Simple_repeat 5 100 0 1 1160 484 275 0 0 chr9 75485635 75485755 -48590417 - ID_B1 SINE B4 -1 223 104 1 1160 317 295 26 35 chr9 75485660 75485776 -48590396 - B1F1 SINE Alu -29 120 6 1 1160 1342 180 97 61 chr9 75486230 75486281 -48589891 - ORR1D1 LTR MaLR 0 374 324 1 1160 639 0 0 0 chr9 75486281 75486352 -48589820 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1160 1342 180 97 61 chr9 75486352 75486661 -48589511 - ORR1D1 LTR MaLR -51 323 3 1 1160 312 27 0 0 chr9 75486803 75486840 -48589332 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1160 260 221 60 140 chr9 75486841 75486941 -48589231 - B4A SINE B4 0 292 201 1 1160 814 270 38 15 chr9 75486972 75487239 -48588933 - B4A SINE B4 -19 273 1 1 1160 2996 130 20 4 chr9 75487680 75488022 -48588150 + RLTR28 LTR ERVL 2 346 -178 1 1160 450 0 0 0 chr9 75488022 75488072 -48588100 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1160 2996 130 20 4 chr9 75488072 75488230 -48587942 + RLTR28 LTR ERVL 347 509 -15 1 1160 227 312 40 30 chr9 75488219 75488244 -48587928 - ID_B1 SINE B4 -8 216 117 1 1160 340 243 40 0 chr9 75488244 75488318 -48587854 - B1F SINE Alu -37 112 36 1 1160 267 157 88 88 chr9 75488328 75488419 -48587753 - B1F SINE Alu -31 118 28 1 1160 210 243 13 39 chr9 75488447 75488524 -48587648 - PB1D10 SINE Alu -1 116 42 1 1160 407 242 6 3 chr9 75489666 75490032 -48586140 + (TG)n Simple_repeat Simple_repeat 1 367 0 1 1160 3771 142 77 13 chr9 75490044 75490372 -48585800 + RMER6D LTR ERVK 1 371 -349 1 1160 582 75 0 0 chr9 75490372 75490452 -48585720 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1160 3771 142 77 13 chr9 75490452 75490799 -48585373 + RMER6D LTR ERVK 372 719 -1 1 1160 669 166 0 0 chr9 75490801 75490946 -48585226 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1160 2087 119 69 8 chr9 75492089 75492453 -48583719 - ORR1B1 LTR MaLR -8 386 1 1 1160 581 204 26 0 chr9 75492527 75492640 -48583532 + ID_B1 SINE B4 109 224 0 1 1160 1009 258 64 58 chr9 75492650 75492832 -48583340 + ORR1E LTR MaLR 4 193 -166 1 1160 2883 42 123 3 chr9 75492832 75493189 -48582983 + MTB LTR MaLR 1 400 0 1 1160 1009 258 64 58 chr9 75493189 75493352 -48582820 + ORR1E LTR MaLR 194 351 -8 1 1160 244 181 42 0 chr9 75494028 75494100 -48582072 + (TATG)n Simple_repeat Simple_repeat 4 78 0 1 1160 529 190 17 25 chr9 75494328 75494447 -48581725 - B1F1 SINE Alu -1 148 31 1 1160 559 233 0 8 chr9 75495418 75495535 -48580637 + PB1D7 SINE Alu 4 119 -1 1 1160 793 277 90 30 chr9 75495655 75496107 -48580065 + L1MA4A LINE L1 3931 4389 -1754 1 1160 588 194 52 7 chr9 75496194 75496329 -48579843 + B1_Mur2 SINE Alu 6 146 -3 1 1160 1587 295 72 61 chr9 75496433 75496943 -48579229 + L1MA4A LINE L1 4498 4994 -1149 1 1160 816 175 175 0 chr9 75496943 75497120 -48579052 - B3 SINE B2 -8 208 1 1 1160 1587 295 72 61 chr9 75497120 75497400 -48578772 + L1MA4A LINE L1 4995 5297 -846 1 2 588 229 15 22 chr9 75497409 75497543 -48578629 + B4A SINE B4 8 140 -152 1 1161 590 79 20 0 chr9 75497551 75497652 -48578520 + (TTATG)n Simple_repeat Simple_repeat 4 106 0 1 1161 517 186 29 19 chr9 75497652 75497756 -48578416 - B1_Mur2 SINE Alu -10 139 35 1 1161 349 299 0 0 chr9 75497771 75497858 -48578314 + B4 SINE B4 129 215 -77 1 1161 532 218 64 0 chr9 75497856 75497966 -48578206 + RSINE1 SINE B4 7 123 -42 1 1161 341 164 30 0 chr9 75498002 75498069 -48578103 + B4A SINE B4 216 284 -8 1 1161 546 174 0 0 chr9 75498157 75498249 -48577923 - B1_Mur2 SINE Alu -1 148 57 1 1161 1032 275 120 31 chr9 75498250 75498767 -48577405 + L1MA4A LINE L1 5338 5927 -376 1 1161 396 0 0 0 chr9 75498793 75498837 -48577335 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1161 614 245 0 53 chr9 75499055 75499206 -48576966 + B1_Mur1 SINE Alu 6 148 -1 1 1161 198 0 0 0 chr9 75499242 75499264 -48576908 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1161 394 210 0 12 chr9 75499729 75499811 -48576361 - B3A SINE B2 -117 81 1 1 1161 286 234 13 13 chr9 75500070 75500148 -48576024 - MIR SINE MIR -85 177 100 1 1161 405 153 0 0 chr9 75500156 75500228 -48575944 + (CATA)n Simple_repeat Simple_repeat 1 72 0 2 1161 386 296 7 36 chr9 75500585 75500725 -48575447 + RSINE1 SINE B4 2 137 -28 3 1161 275 309 96 16 chr9 75500898 75501023 -48575149 - B1F2 SINE Alu -9 140 6 4 1161 243 0 0 0 chr9 75501126 75501153 -48575019 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1161 27 0 0 0 chr9 75501281 75501308 -48574864 + AT_rich Low_complexity Low_complexity 1 27 0 6 1161 922 280 5 0 chr9 75501426 75501633 -48574539 + ID_B1 SINE B4 1 208 -16 7 1161 476 161 12 0 chr9 75501726 75501807 -48574365 + B1_Mur2 SINE Alu 59 140 -9 8 1161 501 32 0 0 chr9 75501807 75501870 -48574302 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1161 652 230 58 16 chr9 75501923 75502113 -48574059 - B3 SINE B2 -4 212 15 1 1161 562 297 7 14 chr9 75502882 75503022 -48573150 + RSINE1 SINE B4 10 148 -17 1 1161 668 243 157 0 chr9 75503185 75503370 -48572802 + ID_B1 SINE B4 6 219 -5 1 1161 193 210 16 16 chr9 75503370 75503433 -48572739 + GA-rich Low_complexity Low_complexity 1 63 0 1 1161 226 357 0 0 chr9 75503496 75503580 -48572592 + MIR SINE MIR 30 113 -95 1 1161 685 220 7 13 chr9 75504075 75504220 -48571952 + B3 SINE B2 5 150 -66 1 1161 1200 7 0 20 chr9 75504220 75504372 -48571800 + (CA)n Simple_repeat Simple_repeat 2 150 0 1 1161 686 231 0 7 chr9 75504677 75504812 -48571360 + ID_B1 SINE B4 84 217 -7 1 1161 263 230 130 62 chr9 75504694 75504856 -48571316 - YREP_Mm Unknown Unknown -1515 297 125 1 1161 22 70 0 0 chr9 75504920 75504963 -48571209 + AT_rich Low_complexity Low_complexity 1 43 0 1 1161 808 207 53 5 chr9 75504973 75505162 -48571010 - B3A SINE B2 0 198 1 2 1161 459 0 0 0 chr9 75505417 75505468 -48570704 + (TCC)n Simple_repeat Simple_repeat 3 53 0 2 1161 538 265 0 0 chr9 75505608 75505725 -48570447 + B1F SINE Alu 2 118 -31 2 1161 374 319 21 21 chr9 75505609 75505750 -48570422 + ID_B1 SINE B4 84 224 0 2 1161 237 237 0 0 chr9 75505753 75505812 -48570360 + GA-rich Low_complexity Low_complexity 2 60 0 2 1161 186 189 0 0 chr9 75506806 75506843 -48569329 + GA-rich Low_complexity Low_complexity 4 40 0 2 1161 749 204 7 22 chr9 75507048 75507183 -48568989 + B1_Mur1 SINE Alu 1 133 -16 2 1161 580 229 84 0 chr9 75507216 75507347 -48568825 + RSINE1 SINE B4 2 143 -22 2 1161 189 147 0 0 chr9 75507390 75507424 -48568748 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1161 315 0 0 0 chr9 75507434 75507469 -48568703 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 2 1161 1229 54 0 0 chr9 75508103 75508250 -48567922 - B1_Mus1 SINE Alu 0 148 2 3 1161 566 208 83 0 chr9 75508421 75508541 -48567631 + B1F SINE Alu 12 141 -8 3 1161 180 0 0 0 chr9 75508954 75508974 -48567198 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1161 372 316 51 6 chr9 75509306 75509481 -48566691 - MIR3 SINE MIR -24 184 2 3 1161 247 208 19 0 chr9 75509544 75509597 -48566575 - PB1 SINE Alu -43 84 31 3 1161 352 215 0 0 chr9 75509660 75509725 -48566447 - ID4 SINE ID -13 70 6 3 1161 276 160 0 0 chr9 75509805 75509855 -48566317 - ID_B1 SINE B4 0 224 175 3 1161 263 165 33 132 chr9 75509855 75509895 -48566277 - PB1D10 SINE Alu 0 116 36 3 1161 646 256 12 66 chr9 75509895 75510062 -48566110 + B4A SINE B4 114 271 -21 3 1161 477 62 0 0 chr9 75510064 75510129 -48566043 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1161 22 0 0 0 chr9 75510135 75510157 -48566015 + AT_rich Low_complexity Low_complexity 1 22 0 4 1161 180 97 0 0 chr9 75510379 75510410 -48565762 + (C)n Simple_repeat Simple_repeat 1 31 0 4 1161 233 266 16 0 chr9 75510681 75510745 -48565427 + tRNA-Gly-GGG tRNA tRNA 8 72 -2 4 1161 363 301 20 20 chr9 75511212 75511361 -48564811 - B1F SINE Alu 0 149 1 4 1161 372 157 229 0 chr9 75511564 75511647 -48564525 + URR1A DNA MER1_type 13 114 -112 4 1161 1220 152 4 152 chr9 75511647 75511739 -48564433 + URR1A DNA MER1_type 2 91 -135 4 1161 1244 34 0 0 chr9 75511739 75511885 -48564287 + B1_Mm SINE Alu 2 147 0 4 1161 1220 152 4 152 chr9 75511885 75512055 -48564117 + URR1A DNA MER1_type 92 225 -1 4 1161 351 113 0 0 chr9 75512240 75512293 -48563879 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 4 1161 1605 186 8 44 chr9 75512645 75512981 -48563191 + MTD LTR MaLR 1 299 -80 4 1161 657 182 170 70 chr9 75513608 75513779 -48562393 - B3 SINE B2 -7 188 1 4 1161 812 255 73 5 chr9 75514111 75514316 -48561856 + ID_B1 SINE B4 1 219 -5 4 1161 248 233 151 0 chr9 75515175 75515248 -48560924 + L1MA9 LINE L1 5836 5919 -393 5 1161 659 300 8 8 chr9 75515250 75515492 -48560680 + MER2 DNA MER2_type 11 252 -93 5 1161 230 153 27 40 chr9 75515501 75515576 -48560596 + CT-rich Low_complexity Low_complexity 4 77 0 5 1161 247 184 0 0 chr9 75515600 75515656 -48560516 - BC1_Mm scRNA scRNA -19 64 9 5 1161 366 281 22 0 chr9 75515668 75515757 -48560415 + MER2 DNA MER2_type 255 345 0 5 1161 859 227 74 74 chr9 75515757 75516109 -48560063 + L1MA9 LINE L1 5924 6275 -37 5 1161 706 8 32 41 chr9 75516109 75516232 -48559940 + (GTGTG)n Simple_repeat Simple_repeat 1 122 0 5 1161 378 0 0 0 chr9 75516239 75516281 -48559891 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1161 362 228 152 0 chr9 75516284 75516376 -48559796 - B1F SINE Alu -21 128 23 5 1161 342 0 0 0 chr9 75516376 75516414 -48559758 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1161 556 318 0 7 chr9 75516469 75516624 -48559548 + RSINE1 SINE B4 6 159 -6 5 1161 182 286 20 0 chr9 75516736 75516785 -48559387 + L2c LINE L2 3337 3386 -1 5 1161 268 325 33 16 chr9 75517657 75517779 -48558393 + L2b LINE L2 2514 2637 -782 6 1161 551 341 16 100 chr9 75517965 75518275 -48557897 + B4 SINE B4 1 284 -8 6 1161 441 54 0 0 chr9 75518369 75518425 -48557747 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1161 274 323 30 30 chr9 75518428 75518562 -48557610 + MLT1A1 LTR MaLR 1 134 -274 6 1161 1359 209 155 9 chr9 75518569 75518811 -48557361 + ORR1D2 LTR MaLR 1 249 -121 6 1161 182 0 107 0 chr9 75518811 75518839 -48557333 + (ATGGTG)n Simple_repeat Simple_repeat 6 36 0 6 1161 1359 209 155 9 chr9 75518839 75518919 -48557253 + ORR1D2 LTR MaLR 250 370 0 6 1161 299 321 99 7 chr9 75519311 75519452 -48556720 - RSINE1 SINE B4 0 165 12 6 1161 714 44 0 0 chr9 75519597 75519687 -48556485 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 1161 1197 56 0 0 chr9 75519687 75519830 -48556342 - B1_Mus1 SINE Alu -5 143 1 6 1161 942 256 10 5 chr9 75520341 75520549 -48555623 - B3 SINE B2 -7 209 1 6 1161 269 357 63 21 chr9 75520808 75520997 -48555175 + L2b LINE L2 3098 3294 -81 6 1161 2539 132 0 28 chr9 75521198 75521587 -48554585 + ORR1C1 LTR MaLR 1 378 0 7 1161 411 252 0 105 chr9 75521724 75521857 -48554315 + B1F SINE Alu 3 121 -28 7 1161 833 66 0 8 chr9 75521857 75521979 -48554193 + (CA)n Simple_repeat Simple_repeat 1 121 0 7 1161 1840 148 133 60 chr9 75522342 75522709 -48553463 + ORR1B1 LTR MaLR 1 394 0 7 1161 186 43 0 0 chr9 75523090 75523113 -48553059 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1161 207 0 0 0 chr9 75523354 75523377 -48552795 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 7 1161 1541 223 54 0 chr9 75523446 75523800 -48552372 + Lx9 LINE L1 6638 7010 -634 7 1161 387 0 0 0 chr9 75523924 75523967 -48552205 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1161 364 295 0 35 chr9 75524749 75524865 -48551307 - PB1D9 SINE Alu -8 112 1 7 1161 571 196 0 9 chr9 75525100 75525213 -48550959 + PB1D7 SINE Alu 9 120 0 7 1161 231 233 172 11 chr9 75525466 75525553 -48550619 + BC1_Mm scRNA scRNA 2 102 -50 8 1161 581 211 44 0 chr9 75525801 75525915 -48550257 - PB1D9 SINE Alu 0 120 2 8 1161 330 261 25 12 chr9 75528266 75528377 -48547795 + PB1D10 SINE Alu 6 119 -1 8 1161 398 295 19 9 chr9 75528394 75528500 -48547672 + PB1D10 SINE Alu 2 108 -9 8 1161 350 188 14 0 chr9 75528504 75528573 -48547599 + ID4 SINE ID 5 74 -9 8 1161 240 397 22 0 chr9 75528622 75528758 -48547414 - L2 LINE L2 -612 2807 2669 8 1161 306 0 0 0 chr9 75528956 75528990 -48547182 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 8 1161 182 343 66 22 chr9 75529047 75529184 -48546988 - L2 LINE L2 -938 2481 2339 8 1161 481 224 124 31 chr9 75529428 75529557 -48546615 - B1F SINE Alu -5 144 4 8 1161 422 291 0 8 chr9 75530337 75530455 -48545717 + PB1D10 SINE Alu 1 117 0 8 1161 234 0 0 0 chr9 75532391 75532417 -48543755 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 8 1161 180 0 0 0 chr9 75532904 75532924 -48543248 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1161 390 218 358 8 chr9 75533164 75533298 -48542874 + B3A SINE B2 2 182 -16 9 1161 1998 130 80 29 chr9 75533940 75534289 -48541883 + ORR1B2 LTR MaLR 1 367 0 9 1161 626 252 14 0 chr9 75534559 75534698 -48541474 + ID_B1 SINE B4 83 223 -1 9 1161 498 299 65 38 chr9 75534812 75535147 -48541025 - L1MC5 LINE L1 -34 7927 7581 9 1161 3160 47 47 3 chr9 75535147 75535530 -48540642 - MTB LTR MaLR 0 400 1 9 1161 498 299 65 38 chr9 75535530 75535563 -48540609 - L1MC5 LINE L1 -381 7580 7549 9 1161 1045 201 183 103 chr9 75537436 75537538 -48538634 + MT2A LTR ERVL 1 104 -429 9 1161 489 34 0 0 chr9 75537538 75537597 -48538575 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 9 1161 732 156 7 62 chr9 75537598 75537742 -48538430 - B1_Mus1 SINE Alu -12 136 1 9 1161 1045 201 183 103 chr9 75537742 75537817 -48538355 + MT2A LTR ERVL 105 146 -387 9 1161 4308 72 12 4 chr9 75537817 75538376 -48537796 - LTRIS2 LTR ERV1 0 564 1 9 1161 1045 201 183 103 chr9 75538376 75538583 -48537589 + MT2A LTR ERVL 147 417 -116 9 1161 849 10 0 0 chr9 75538583 75538681 -48537491 + (TC)n Simple_repeat Simple_repeat 1 98 0 1 1161 296 47 0 0 chr9 75538681 75538724 -48537448 + MT2A LTR ERVL 485 527 -6 9 1161 5037 135 141 20 chr9 75539062 75540046 -48536126 - RLTR25A LTR ERVK 0 1103 1 1 1161 461 232 0 0 chr9 75540255 75540337 -48535835 + RSINE1 SINE B4 3 84 -81 1 1161 351 0 0 0 chr9 75540339 75540378 -48535794 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1161 266 0 29 0 chr9 75540412 75540446 -48535726 + (CTAA)n Simple_repeat Simple_repeat 2 36 0 1 1161 438 183 21 0 chr9 75540928 75541021 -48535151 - PB1D10 SINE Alu -7 110 18 1 1161 1228 61 0 0 chr9 75541063 75541211 -48534961 - B1_Mus1 SINE Alu 0 148 1 1 1161 24 0 0 0 chr9 75541231 75541255 -48534917 + AT_rich Low_complexity Low_complexity 1 24 0 1 1161 411 202 48 124 chr9 75542548 75542734 -48533438 - Lx8 LINE L1 -2 7471 7300 1 1161 248 289 50 40 chr9 75542731 75542832 -48533340 - Lx8 LINE L1 -334 7139 7038 1 1161 233 222 0 0 chr9 75543467 75543512 -48532660 + CT-rich Low_complexity Low_complexity 2 46 0 1 1161 867 222 43 11 chr9 75543585 75543772 -48532400 - B4 SINE B4 -1 291 99 1 1161 981 195 0 8 chr9 75543779 75544046 -48532126 + CT-rich Low_complexity Low_complexity 1 264 0 1 1161 628 194 7 92 chr9 75544059 75544212 -48531960 - B1_Mm SINE Alu -6 141 2 1 1161 231 306 0 27 chr9 75544237 75544311 -48531861 - ID4_ SINE ID -11 72 1 1 1161 294 219 41 0 chr9 75545334 75545407 -48530765 + ID4_ SINE ID 5 80 -3 1 1161 243 366 134 18 chr9 75545653 75545817 -48530355 - LTR33 LTR ERVL -327 188 6 1 1161 346 108 15 15 chr9 75545897 75545963 -48530209 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1161 286 320 31 0 chr9 75545967 75546064 -48530108 - ID_B1 SINE B4 -38 186 87 1 1161 22 0 0 0 chr9 75546764 75546786 -48529386 + AT_rich Low_complexity Low_complexity 1 22 0 1 1161 255 273 0 29 chr9 75546953 75546966 -48529206 - B4 SINE B4 -136 156 91 1 1161 301 170 0 36 chr9 75546966 75547021 -48529151 - B1_Mus2 SINE Alu -89 58 6 1 1161 400 194 18 80 chr9 75547272 75547384 -48528788 - B3 SINE B2 -3 213 109 1 1161 272 157 39 0 chr9 75547413 75547464 -48528708 - ID_B1 SINE B4 -2 222 170 1 1161 394 217 0 12 chr9 75547480 75547564 -48528608 - B3A SINE B2 -4 194 112 1 1161 1345 74 5 0 chr9 75548763 75548952 -48527220 + ORR1A2 LTR MaLR 137 326 -1 1 1161 4321 137 42 3 chr9 75549018 75549684 -48526488 - RLTR17 LTR ERVK 0 692 1 1 1161 833 82 0 8 chr9 75550357 75550480 -48525692 - ORR1B1 LTR MaLR 0 394 273 1 1161 339 193 0 0 chr9 75550479 75550536 -48525636 - ORR1B1 LTR MaLR -89 305 249 1 1161 1694 151 167 19 chr9 75552433 75552757 -48523415 - ORR1D1 LTR MaLR -2 372 1 1 1161 1835 123 58 61 chr9 75554275 75554603 -48521569 - ORR1A2 LTR MaLR 0 327 1 1 1161 189 0 0 0 chr9 75554948 75554969 -48521203 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 1 1161 222 37 0 0 chr9 75554985 75555012 -48521160 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 1161 285 338 25 49 chr9 75555022 75555184 -48520988 + RMER4A LTR ERVK 6 163 -303 1 1161 332 24 0 0 chr9 75556817 75556859 -48519313 + RLTR10B LTR ERVK 1 42 -250 1 1161 2134 42 0 50 chr9 75556867 75557166 -48519006 + RLTR10B LTR ERVK 9 292 0 1 1161 1305 101 20 16 chr9 75557166 75557479 -48518693 + MMERVK10C-int LTR ERVK 1 399 -7182 1 1161 40056 40 1 1 chr9 75557477 75562418 -48513754 + MMERVK10C-int LTR ERVK 870 5810 -1771 1 1161 7088 57 1 28 chr9 75562404 75563366 -48512806 + MMERVK10C-int LTR ERVK 6646 7581 0 1 1161 332 24 0 0 chr9 75563366 75563408 -48512764 + RLTR10B LTR ERVK 1 42 -250 1 1161 2098 53 0 50 chr9 75563416 75563715 -48512457 + RLTR10B LTR ERVK 9 292 0 1 1161 2432 100 148 0 chr9 75564292 75564683 -48511489 + RLTR44B LTR ERVK 1 449 0 1 1161 260 372 0 33 chr9 75565456 75565606 -48510566 - Lx7 LINE L1 -410 7286 7142 1 1161 3934 38 6 6 chr9 75565644 75566119 -48510053 + MT2C_Mm LTR ERVL 1 475 0 1 1161 279 0 0 0 chr9 75566300 75566331 -48509841 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1161 734 191 0 7 chr9 75566458 75566606 -48509566 - B1_Mus2 SINE Alu 0 147 1 1 1161 537 16 0 0 chr9 75568075 75568137 -48508035 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1161 22 0 0 0 chr9 75568143 75568165 -48508007 + AT_rich Low_complexity Low_complexity 1 22 0 1 1161 282 312 53 11 chr9 75568187 75568281 -48507891 - B3 SINE B2 -6 210 113 1 1161 37379 46 5 9 chr9 75568553 75574865 -48501307 - L1Md_T LINE L1 -1 6581 281 1 1161 707 191 99 0 chr9 75574869 75575000 -48501172 - B1_Mus2 SINE Alu -1 146 3 1 1161 693 226 164 19 chr9 75575104 75575244 -48500928 + L1_Rod LINE L1 996 1148 -6460 1 1161 1964 133 18 12 chr9 75575244 75575571 -48500601 - ORR1A4 LTR MaLR 0 329 1 1 1161 693 228 157 15 chr9 75575571 75575790 -48500382 + L1_Rod LINE L1 1149 1401 -4446 1 1161 5115 200 53 12 chr9 75575828 75576923 -48499249 - ORR1D-int LTR MaLR -5 1365 226 1 1161 601 287 38 27 chr9 75576923 75577104 -48499068 + Lx9 LINE L1 7210 7395 -249 1 1161 1293 217 90 12 chr9 75577104 75577266 -48498906 + ORR1D1 LTR MaLR 3 167 -207 1 1161 264 111 0 0 chr9 75577266 75577311 -48498861 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1161 1293 217 90 12 chr9 75577311 75577493 -48498679 + ORR1D1 LTR MaLR 168 374 0 1 1161 601 287 38 27 chr9 75577493 75577572 -48498600 + Lx9 LINE L1 7396 7473 -171 1 1161 360 0 0 0 chr9 75577579 75577619 -48498553 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1161 304 224 84 0 chr9 75577621 75577728 -48498444 + Lx9 LINE L1 7515 7630 -14 1 1161 255 325 80 40 chr9 75577740 75577916 -48498256 - Lx8 LINE L1 -236 7237 7055 1 1161 269 233 0 85 chr9 75578062 75578156 -48498016 - Lx8 LINE L1 -1512 5961 5876 1 1161 1904 99 31 22 chr9 75578158 75578477 -48497695 - RLTRETN_Mm LTR ERVK 0 322 1 1 1161 37654 19 12 7 chr9 75578477 75583119 -48493053 - MMETn-int LTR ERVK 0 4844 180 1 1161 2866 31 0 0 chr9 75583090 75583444 -48492728 - ETnERV-int LTR ERVK -2960 354 1 1 1161 1915 96 31 22 chr9 75583444 75583763 -48492409 - RLTRETN_Mm LTR ERVK 0 322 1 1 1161 310 192 64 0 chr9 75583763 75583841 -48492331 - Lx8 LINE L1 -3 5877 5795 1 1161 1546 99 0 5 chr9 75583933 75584156 -48492016 - Lx2 LINE L1 -1 6996 6775 1 1161 4829 114 23 7 chr9 75584156 75584931 -48491241 - Lx2 LINE L1 -354 6643 5856 1 1161 1451 88 5 0 chr9 75585120 75585312 -48490860 - B2_Mm2 SINE B2 -2 193 1 1 1161 397 318 140 29 chr9 75585519 75585791 -48490381 + RMER5 LTR ERV1 33 334 -200 1 1161 315 0 0 0 chr9 75586128 75586163 -48490009 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1161 28 0 0 0 chr9 75587171 75587199 -48488973 + AT_rich Low_complexity Low_complexity 1 28 0 1 1161 385 148 96 8 chr9 75587340 75587434 -48488738 - MT2A LTR ERVL -10 591 432 1 1161 1992 153 18 6 chr9 75587495 75587836 -48488336 + ORR1D1-int LTR MaLR 1026 1370 0 1 1161 1387 212 98 17 chr9 75587836 75588182 -48487990 + ORR1D1 LTR MaLR 1 374 0 1 1161 233 324 39 10 chr9 75589027 75589130 -48487042 - PB1D9 SINE Alu -10 110 5 1 1161 393 22 0 0 chr9 75589911 75589957 -48486215 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1161 28 29 0 0 chr9 75590553 75590588 -48485584 + AT_rich Low_complexity Low_complexity 1 35 0 1 1161 648 87 0 0 chr9 75590997 75591089 -48485083 + (CATA)n Simple_repeat Simple_repeat 2 93 0 1 1161 654 126 0 0 chr9 75591491 75591594 -48484578 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 1 1161 21 71 0 0 chr9 75591686 75591728 -48484444 + AT_rich Low_complexity Low_complexity 1 42 0 1 1161 1188 181 0 19 chr9 75591911 75592125 -48484047 - B3 SINE B2 -5 211 2 1 1161 416 186 19 58 chr9 75592203 75592306 -48483866 - B4A SINE B4 -6 286 188 1 1161 280 170 19 0 chr9 75592365 75592418 -48483754 - B4 SINE B4 -238 54 1 1 1161 22 0 0 0 chr9 75593033 75593055 -48483117 + AT_rich Low_complexity Low_complexity 1 22 0 1 1161 1165 130 81 14 chr9 75593692 75593903 -48482269 + URR1B DNA MER1_type 1 225 0 1 1161 313 331 102 23 chr9 75595434 75595610 -48480562 - L1MEe LINE L1 -4380 474 285 1 1161 588 248 37 31 chr9 75595740 75595902 -48480270 - RSINE1 SINE B4 0 165 3 1 1161 263 170 37 19 chr9 75596088 75596142 -48480030 + MTEa LTR MaLR 2 56 -323 1 1161 721 222 7 7 chr9 75596227 75596372 -48479800 + ORR1C2 LTR MaLR 3 147 -227 1 1161 971 154 63 19 chr9 75596518 75596723 -48479449 + ORR1C2 LTR MaLR 144 357 -27 1 1161 423 0 0 0 chr9 75597303 75597350 -48478822 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1161 328 198 93 58 chr9 75597352 75597438 -48478734 - B1F SINE Alu -46 103 15 1 1161 342 0 0 0 chr9 75597819 75597857 -48478315 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1161 263 289 31 55 chr9 75597910 75598038 -48478134 - L1MA4A LINE L1 -373 5930 5806 1 1161 40 49 0 0 chr9 75598823 75598884 -48477288 + AT_rich Low_complexity Low_complexity 1 61 0 1 1161 1992 172 135 39 chr9 75599120 75599579 -48476593 - RMER5 LTR ERV1 -10 524 22 1 1161 38 51 0 0 chr9 75599672 75599731 -48476441 + AT_rich Low_complexity Low_complexity 1 59 0 1 1161 311 296 20 0 chr9 75599791 75599889 -48476283 + MIRb SINE MIR 156 255 -13 1 1161 281 205 48 32 chr9 75600566 75600692 -48475480 + Lx9 LINE L1 7510 7637 -7 1 1161 446 327 174 27 chr9 75600859 75601444 -48474728 + L1M5 LINE L1 3457 4127 -2019 1 1161 520 324 29 0 chr9 75601457 75601593 -48474579 + B1F2 SINE Alu 9 148 -1 1 1161 2099 112 15 9 chr9 75601708 75602032 -48474140 + ORR1A3 LTR MaLR 1 326 0 1 1161 508 244 104 46 chr9 75602160 75602401 -48473771 + MER33 DNA MER1_type 39 293 -31 1 1161 216 0 0 0 chr9 75602548 75602572 -48473600 + (TTCTG)n Simple_repeat Simple_repeat 1 24 0 1 1161 539 161 43 0 chr9 75604451 75604612 -48471560 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 1161 258 271 43 0 chr9 75604658 75604728 -48471444 - B4A SINE B4 -114 178 106 1 1161 2604 183 32 10 chr9 75604743 75605240 -48470932 - Lx3C LINE L1 -2 6974 6467 1 1161 12174 128 13 18 chr9 75605240 75605873 -48470299 + L1_Mur2 LINE L1 3704 4339 -1538 1 1161 1159 68 0 0 chr9 75605873 75606020 -48470152 + B1_Mus2 SINE Alu 1 147 0 1 1161 12174 128 13 18 chr9 75606020 75606342 -48469830 + L1_Mur2 LINE L1 4340 4634 -1243 1 1161 2885 69 58 0 chr9 75606342 75606720 -48469452 - MTB LTR MaLR 0 400 1 1 1161 12174 128 13 18 chr9 75606720 75607850 -48468322 + L1_Mur2 LINE L1 4635 5782 -95 1 1161 392 77 0 0 chr9 75607856 75607908 -48468264 - L1_Mus3 LINE L1 -380 6258 6207 1 1161 473 121 30 10 chr9 75607913 75608013 -48468159 + L1_Mus3 LINE L1 6530 6631 -7 1 1161 1182 37 0 0 chr9 75611050 75611186 -48464986 + B1_Mm SINE Alu 1 136 -11 1 1161 304 40 20 20 chr9 75611187 75611238 -48464934 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1161 324 0 0 0 chr9 75611239 75611275 -48464897 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 2 1161 2228 318 87 29 chr9 75611287 75612385 -48463787 - Lx8 LINE L1 -5 7468 6308 2 1161 21 0 0 0 chr9 75613450 75613471 -48462701 + AT_rich Low_complexity Low_complexity 1 21 0 2 1161 238 347 21 10 chr9 75613807 75613903 -48462269 - MIRc SINE MIR -44 224 128 2 1161 253 276 100 50 chr9 75614265 75614461 -48461711 - MIRb SINE MIR -44 224 16 2 1161 1421 68 0 10 chr9 75615360 75615552 -48460620 + B2_Mm2 SINE B2 2 191 -4 2 1161 1373 79 0 24 chr9 75616447 75616654 -48459518 - L1Md_F2 LINE L1 -7 6575 6374 2 1161 207 163 20 20 chr9 75616734 75616784 -48459388 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 1161 238 119 33 33 chr9 75618161 75618222 -48457950 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2 1161 818 226 78 5 chr9 75618338 75618529 -48457643 - B3 SINE B2 -10 206 2 2 1161 2297 29 64 0 chr9 75618839 75619120 -48457052 + L1Md_F2 LINE L1 6284 6582 0 2 1161 713 326 124 39 chr9 75619329 75619820 -48456352 - MT2A LTR ERVL 0 533 1 2 1161 423 0 0 0 chr9 75620350 75620397 -48455775 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 2 1161 315 0 0 0 chr9 75620398 75620433 -48455739 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 2 1161 333 0 0 0 chr9 75620679 75620716 -48455456 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1161 206 238 0 0 chr9 75624715 75624757 -48451415 + GA-rich Low_complexity Low_complexity 2 43 0 2 1161 216 0 0 0 chr9 75628395 75628419 -48447753 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 1162 183 114 0 0 chr9 75630470 75630505 -48445667 + (CCCA)n Simple_repeat Simple_repeat 3 37 0 2 1162 440 305 30 15 chr9 75630551 75630684 -48445488 + RSINE1 SINE B4 31 165 0 2 1162 198 372 12 0 chr9 75631025 75631111 -48445061 + MIR SINE MIR 35 121 -141 2 1162 3576 168 91 43 chr9 75631316 75631841 -48444331 + RMER1A Other Other 223 783 -247 2 1162 3820 64 14 2 chr9 75631841 75632340 -48443832 - L1_Mus1 LINE L1 -2 6565 6061 2 1162 3576 168 91 43 chr9 75632340 75632443 -48443729 + RMER1A Other Other 784 868 -162 2 1162 279 0 0 0 chr9 75632443 75632474 -48443698 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 1162 3576 168 91 43 chr9 75632474 75632591 -48443581 + RMER1A Other Other 869 1004 -26 2 1162 234 355 138 48 chr9 75632824 75633236 -48442936 - LTR33 LTR ERVL -9 506 58 2 1162 707 263 54 0 chr9 75634139 75634344 -48441828 - B3 SINE B2 0 216 1 2 1162 356 281 12 0 chr9 75636936 75637018 -48439154 - RSINE1 SINE B4 -69 96 14 2 1162 586 195 42 0 chr9 75638514 75638632 -48437540 + Lx9 LINE L1 6872 6994 -650 2 1162 7371 210 46 53 chr9 75638655 75639837 -48436335 - Lx7 LINE L1 -148 7548 6412 2 1162 4143 28 14 8 chr9 75639837 75640344 -48435828 + L1Md_F3 LINE L1 6061 6570 -14 2 1162 7371 210 46 53 chr9 75640344 75640889 -48435283 - Lx7 LINE L1 -1285 6411 5832 2 1162 2080 166 87 5 chr9 75640892 75641328 -48434844 - Lx7 LINE L1 -898 4982 4511 2 1162 398 256 0 0 chr9 75641329 75641411 -48434761 - B3A SINE B2 -116 82 1 2 1162 508 319 43 11 chr9 75641758 75641942 -48434230 - MER97c DNA MER1_type? -864 226 37 2 1162 557 205 73 73 chr9 75642067 75642246 -48433926 - Lx9 LINE L1 0 7644 7466 2 1162 273 296 173 64 chr9 75643341 75643590 -48432582 - MamGypLTR1a LTR Gypsy -478 306 31 2 1162 258 81 0 0 chr9 75643595 75643632 -48432540 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 2 1162 279 0 0 0 chr9 75643630 75643661 -48432511 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2 1162 216 97 0 0 chr9 75644125 75644156 -48432016 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1162 282 355 93 18 chr9 75644614 75644852 -48431320 + L2a LINE L2 2842 3098 -289 2 1162 249 354 0 0 chr9 75645061 75645140 -48431032 + L2a LINE L2 3346 3424 -2 2 1162 517 281 197 12 chr9 75645455 75645704 -48430468 - Lx8 LINE L1 -6 7467 7173 2 1162 332 246 76 45 chr9 75646058 75646190 -48429982 - Lx8 LINE L1 -661 7035 6900 2 1162 26 0 0 0 chr9 75646190 75646216 -48429956 + AT_rich Low_complexity Low_complexity 1 26 0 2 1162 31 26 0 0 chr9 75646250 75646288 -48429884 + AT_rich Low_complexity Low_complexity 1 38 0 2 1162 570 211 79 0 chr9 75646293 75646445 -48429727 - L1MA6 LINE L1 -48 6252 6089 2 1162 573 67 102 48 chr9 75646450 75646574 -48429598 - Lx LINE L1 -20 6634 6521 2 1162 741 318 13 0 chr9 75646573 75646812 -48429360 - Lx8 LINE L1 -554 6919 6678 2 1162 504 191 124 0 chr9 75646819 75646924 -48429248 - B1_Mur2 SINE Alu -29 120 3 2 1162 483 312 6 87 chr9 75647730 75647902 -48428270 + RSINE1 SINE B4 8 165 0 2 1162 637 25 12 0 chr9 75650786 75650867 -48425305 + B1_Mus2 SINE Alu 66 147 0 2 1162 25 31 0 0 chr9 75651628 75651660 -48424512 + AT_rich Low_complexity Low_complexity 1 32 0 2 1162 610 271 126 16 chr9 75652414 75652605 -48423567 + ID_B1 SINE B4 2 213 -11 2 1162 336 48 0 0 chr9 75652607 75652649 -48423523 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 2 1162 24 0 0 0 chr9 75652745 75652769 -48423403 + AT_rich Low_complexity Low_complexity 1 24 0 2 1162 342 310 69 12 chr9 75652954 75653127 -48423045 + L1MEf LINE L1 1312 1494 -4748 2 1162 554 241 108 20 chr9 75653248 75653396 -48422776 + B3A SINE B2 1 161 -37 2 1162 414 0 0 0 chr9 75653397 75653443 -48422729 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1162 234 0 0 0 chr9 75653443 75653468 -48422704 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1162 351 0 0 0 chr9 75653468 75653506 -48422666 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1162 335 219 136 16 chr9 75653627 75653786 -48422386 + L1MEf LINE L1 4077 4257 -1889 2 1162 434 343 114 57 chr9 75653800 75654152 -48422020 + L1MEf LINE L1 4460 4831 -1315 2 1162 1107 281 15 11 chr9 75654527 75654800 -48421372 + B4A SINE B4 15 288 -4 2 1162 3382 145 98 7 chr9 75655227 75655548 -48420624 + RMER6D LTR ERVK 1 368 -352 2 1162 384 22 0 0 chr9 75655548 75655593 -48420579 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1162 3382 145 98 7 chr9 75655593 75655876 -48420296 + RMER6D LTR ERVK 369 660 -60 2 1162 1633 31 0 0 chr9 75655904 75656095 -48420077 - B2_Mm1a SINE B2 -1 192 2 2 1162 4199 44 2 13 chr9 75656102 75656632 -48419540 - L1Md_F3 LINE L1 0 6584 6061 2 1162 2294 104 0 58 chr9 75657470 75657816 -48418356 - ORR1A3 LTR MaLR 0 326 1 2 1162 43 35 0 0 chr9 75657818 75657875 -48418297 + AT_rich Low_complexity Low_complexity 1 57 0 2 1162 21 0 0 0 chr9 75659875 75659896 -48416276 + AT_rich Low_complexity Low_complexity 1 21 0 2 1162 269 265 0 12 chr9 75660592 75660676 -48415496 - Lx7 LINE L1 -45 7651 7569 2 1162 706 169 0 38 chr9 75660790 75660975 -48415197 + CT-rich Low_complexity Low_complexity 3 180 0 2 1162 2354 219 77 30 chr9 75661661 75662194 -48413978 - Lx6 LINE L1 0 7460 6903 2 1162 423 0 0 0 chr9 75662552 75662599 -48413573 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1162 403 233 118 55 chr9 75663033 75663160 -48413012 - B3 SINE B2 -1 215 81 2 1162 1030 170 130 0 chr9 75663394 75663594 -48412578 - URR1A DNA MER1_type 0 226 1 2 1162 21 0 0 0 chr9 75665013 75665034 -48411138 + AT_rich Low_complexity Low_complexity 1 21 0 2 1162 707 109 0 16 chr9 75665659 75665780 -48410392 + (TCCC)n Simple_repeat Simple_repeat 3 121 0 2 1162 320 308 75 60 chr9 75666024 75666322 -48409850 + MER90 LTR ERV1 1 320 -294 2 1162 304 302 94 8 chr9 75666390 75666507 -48409665 + B1F SINE Alu 1 127 0 2 1162 284 347 0 0 chr9 75666818 75666893 -48409279 + PB1D10 SINE Alu 5 79 -38 2 1162 506 227 0 47 chr9 75667344 75667492 -48408680 + RLTR15 LTR ERVK 10 150 -209 2 1162 441 0 0 0 chr9 75667567 75667616 -48408556 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1162 413 181 24 12 chr9 75668345 75668429 -48407743 + PB1D9 SINE Alu 28 112 -8 2 1162 947 233 23 37 chr9 75668451 75668665 -48407507 + B3 SINE B2 6 216 0 2 1162 1105 89 7 0 chr9 75668780 75668926 -48407246 - B1_Mus2 SINE Alu 0 147 1 2 1162 207 0 0 0 chr9 75669369 75669392 -48406780 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1162 437 91 296 22 chr9 75669870 75669980 -48406192 + B2_Mm2 SINE B2 47 189 -6 2 1162 539 298 51 28 chr9 75670245 75670421 -48405751 - B3A SINE B2 -16 182 3 2 1162 261 205 111 37 chr9 75671203 75671284 -48404888 - Lx8 LINE L1 -443 7030 6944 2 1162 3262 41 5 5 chr9 75672289 75672685 -48403487 + MTA_Mm LTR MaLR 1 396 0 2 1162 857 155 25 13 chr9 75672894 75673051 -48403121 - B2_Mm2 SINE B2 -14 181 23 2 1162 1145 41 0 26 chr9 75673194 75673345 -48402827 - B1_Mus1 SINE Alu -1 147 1 2 1162 22 35 0 0 chr9 75673622 75673651 -48402521 + AT_rich Low_complexity Low_complexity 1 29 0 2 1162 183 129 0 0 chr9 75674428 75674459 -48401713 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1162 257 155 17 0 chr9 75674982 75675040 -48401132 + (TAAG)n Simple_repeat Simple_repeat 1 59 0 2 1162 553 272 85 23 chr9 75676157 75676334 -48399838 + B3A SINE B2 1 188 -10 2 1162 1141 35 7 0 chr9 75676393 75676534 -48399638 + B1_Mm SINE Alu 1 142 -5 2 1162 2979 58 0 51 chr9 75677041 75677456 -48398716 - L1_Mus2 LINE L1 0 6566 6173 2 1162 331 274 48 0 chr9 75678087 75678171 -48398001 - PB1D7 SINE Alu -20 100 13 2 1162 265 297 0 0 chr9 75679072 75679136 -48397036 + GA-rich Low_complexity Low_complexity 1 64 0 2 1162 216 0 0 0 chr9 75679614 75679638 -48396534 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1162 1118 130 0 0 chr9 75679638 75679800 -48396372 - B2_Mm2 SINE B2 -33 162 1 2 1162 292 230 40 0 chr9 75680347 75680421 -48395751 - Tigger15a DNA TcMar 0 715 639 2 1162 1392 22 0 16 chr9 75680887 75681070 -48395102 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1162 376 200 39 147 chr9 75681467 75681596 -48394576 + MER20 DNA MER1_type 1 115 -104 2 1162 556 158 92 7 chr9 75681853 75682006 -48394166 - Lx9 LINE L1 -1 7643 7478 2 1162 284 221 51 7 chr9 75682020 75682157 -48394015 + (TA)n Simple_repeat Simple_repeat 1 143 0 3 1162 618 101 0 0 chr9 75682158 75682267 -48393905 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 3 1162 1464 205 106 8 chr9 75682273 75682642 -48393530 - Lx9 LINE L1 -182 7462 7058 2 1162 412 297 0 0 chr9 75683034 75683125 -48393047 + ORR1E LTR MaLR 8 98 -261 3 1162 296 229 29 0 chr9 75683113 75683183 -48392989 + MTD LTR MaLR 347 418 -1 3 1162 286 246 0 0 chr9 75683986 75684043 -48392129 + ID4 SINE ID 14 70 -13 3 1162 237 257 14 14 chr9 75684043 75684057 -48392115 + B4 SINE B4 14 84 -208 3 1162 1154 42 7 7 chr9 75684234 75684379 -48391793 + B1_Mus1 SINE Alu 2 146 -2 3 1162 443 325 27 77 chr9 75684925 75685108 -48391064 + B4A SINE B4 5 178 -114 3 1162 521 302 36 0 chr9 75685108 75685247 -48390925 + B4A SINE B4 146 289 -3 3 1162 2637 89 5 19 chr9 75685320 75685697 -48390475 - L1_Mus2 LINE L1 0 6566 6195 3 1162 22 56 0 0 chr9 75685927 75685963 -48390209 + AT_rich Low_complexity Low_complexity 1 36 0 3 1162 217 294 133 29 chr9 75688100 75688205 -48387967 - L2a LINE L2 -14 3412 3297 3 1162 478 312 45 0 chr9 75688456 75688632 -48387540 + MER115 DNA Tip100 498 681 -12 3 1162 336 48 0 0 chr9 75689629 75689671 -48386501 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 1162 2913 192 43 43 chr9 75689673 75690294 -48385878 - Lx5 LINE L1 0 7050 6430 3 1162 505 315 58 10 chr9 75691398 75691603 -48384569 - ID_B1 SINE B4 -5 219 5 3 1162 278 148 0 18 chr9 75691633 75691688 -48384484 + G-rich Low_complexity Low_complexity 3 56 0 3 1162 205 349 12 0 chr9 75692023 75692106 -48384066 + L2a LINE L2 3306 3389 -37 3 1162 495 0 0 0 chr9 75692111 75692166 -48384006 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 3 1162 581 329 7 13 chr9 75692174 75692325 -48383847 + RSINE1 SINE B4 3 152 -13 3 1162 23 0 0 0 chr9 75692500 75692523 -48383649 + AT_rich Low_complexity Low_complexity 1 23 0 3 1162 753 288 16 65 chr9 75693186 75693509 -48382663 + MER121 Unknown Unknown 6 312 -100 3 1162 1936 187 75 3 chr9 75693761 75694147 -48382025 - MTD LTR MaLR -5 414 1 3 1162 3357 217 117 58 chr9 75694147 75695335 -48380837 - MTD-int LTR MaLR 0 1258 1 3 1162 1531 215 42 109 chr9 75695335 75695784 -48380388 - MTD LTR MaLR 0 419 1 3 1162 414 248 155 47 chr9 75698792 75698940 -48377232 - RSINE1 SINE B4 0 165 2 3 1162 24 0 0 0 chr9 75698950 75698974 -48377198 + AT_rich Low_complexity Low_complexity 1 24 0 3 1162 916 351 58 29 chr9 75699683 75699747 -48376425 - Lx8 LINE L1 -89 7384 7329 3 1162 557 52 13 0 chr9 75699747 75699824 -48376348 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1162 1002 317 42 18 chr9 75699824 75700280 -48375892 - Lx9 LINE L1 -187 7457 6991 3 1162 1263 307 32 30 chr9 75700278 75700741 -48375431 + Lx9 LINE L1 6458 6921 -723 3 1162 1095 286 115 18 chr9 75700758 75701324 -48374848 - L1MC1 LINE L1 -119 6214 5594 3 1162 239 338 43 14 chr9 75701328 75701466 -48374706 + B1F1 SINE Alu 5 146 -3 3 1162 260 307 53 13 chr9 75701474 75701550 -48374622 + ID4_ SINE ID 1 79 -4 3 1162 251 195 523 0 chr9 75701552 75701726 -48374446 - L1MC1 LINE L1 -734 5599 5335 3 1162 227 360 26 9 chr9 75701750 75701865 -48374307 - PB1D10 SINE Alu 0 117 1 3 1162 349 237 208 19 chr9 75701869 75702028 -48374144 - L1MC1 LINE L1 -844 5302 5114 3 1162 1816 222 103 28 chr9 75702562 75703104 -48373068 - Lx9 LINE L1 -2 7642 7060 3 1162 446 318 78 0 chr9 75703150 75703279 -48372893 + ID_B1 SINE B4 84 222 -2 3 1162 231 204 0 0 chr9 75703562 75703611 -48372561 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 3 1162 921 186 48 0 chr9 75703614 75703802 -48372370 - B3 SINE B2 -15 201 5 3 1162 595 317 42 52 chr9 75704663 75704972 -48371200 + Lx8 LINE L1 7166 7471 -2 3 1162 244 317 28 46 chr9 75705285 75705394 -48370778 - PB1D7 SINE Alu -12 108 2 3 1162 231 36 0 0 chr9 75705772 75705800 -48370372 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 1162 189 0 0 0 chr9 75705949 75705970 -48370202 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1162 37 0 0 0 chr9 75706745 75706782 -48369390 + AT_rich Low_complexity Low_complexity 1 37 0 3 1162 483 18 0 0 chr9 75707170 75707226 -48368946 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1162 3474 262 98 39 chr9 75707369 75708648 -48367524 - Lx9 LINE L1 -171 7473 6119 3 1162 431 255 19 9 chr9 75708681 75708788 -48367384 - Lx9 LINE L1 -1687 5957 5850 3 1162 294 248 56 65 chr9 75708813 75708921 -48367251 + Lx4B LINE L1 6946 7052 -6 3 1162 875 212 125 44 chr9 75708945 75709241 -48366931 - Lx9 LINE L1 -50 5797 5478 3 1162 281 234 15 30 chr9 75709451 75709517 -48366655 - RLTR28B LTR ERVL -14 510 446 3 1162 497 200 43 81 chr9 75709597 75709782 -48366390 - Lx2B LINE L1 -1 6999 6822 3 1162 507 245 217 26 chr9 75709785 75710011 -48366161 - RLTR28B LTR ERVL -185 296 28 3 1162 1067 95 6 22 chr9 75710031 75710214 -48365958 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1162 944 286 62 20 chr9 75710269 75710622 -48365550 - Lx8 LINE L1 0 7473 7106 3 1162 1102 314 36 51 chr9 75710619 75711204 -48364968 - Lx8 LINE L1 -889 6755 6160 3 1162 186 43 0 0 chr9 75711214 75711237 -48364935 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 3 1162 799 206 0 21 chr9 75711244 75711388 -48364784 - B1_Mur2 SINE Alu -7 142 2 3 1162 463 247 10 128 chr9 75711527 75711731 -48364441 - B3A SINE B2 -18 180 1 3 1162 1489 155 75 33 chr9 75714150 75714456 -48361716 - Lx7 LINE L1 -2 7694 7376 3 1162 1130 82 0 7 chr9 75714498 75714645 -48361527 + B1_Mus1 SINE Alu 3 148 0 3 1162 704 94 9 0 chr9 75714659 75714765 -48361407 + (GA)n Simple_repeat Simple_repeat 2 108 0 3 1162 3683 222 91 22 chr9 75714796 75715472 -48360700 - Lx7 LINE L1 -330 7366 6680 3 1162 5698 26 1 0 chr9 75715472 75716133 -48360039 + L1Md_T LINE L1 5920 6581 -1 3 1162 3683 222 91 22 chr9 75716133 75716337 -48359835 - Lx7 LINE L1 -1017 6679 6426 3 1162 2568 202 38 7 chr9 75716337 75716598 -48359574 - Lx7 LINE L1 -1545 6151 5881 3 1162 335 23 23 0 chr9 75716598 75716642 -48359530 + (CATA)n Simple_repeat Simple_repeat 2 46 0 3 1162 3844 155 30 7 chr9 75716642 75717344 -48358828 - Lx7 LINE L1 -1816 5880 5153 3 1162 21 0 0 0 chr9 75717622 75717643 -48358529 + AT_rich Low_complexity Low_complexity 1 21 0 3 1162 37 69 0 0 chr9 75717693 75717765 -48358407 + AT_rich Low_complexity Low_complexity 1 72 0 3 1162 292 222 13 40 chr9 75719747 75719822 -48356350 - RMER1B Other Other -607 459 387 3 1162 2904 153 82 2 chr9 75719827 75720201 -48355971 + RMER1B Other Other 541 920 -146 3 1162 926 63 8 0 chr9 75720201 75720327 -48355845 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 3 1162 2904 153 82 2 chr9 75720327 75720438 -48355734 + RMER1B Other Other 921 1065 -1 3 1162 200 297 77 15 chr9 75721027 75721092 -48355080 - L3 LINE CR1 -1287 3202 3134 3 1162 369 0 0 0 chr9 75722562 75722603 -48353569 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1162 361 318 45 0 chr9 75723488 75723598 -48352574 + PB1D10 SINE Alu 3 117 0 3 1162 248 326 0 21 chr9 75723598 75723695 -48352477 + GA-rich Low_complexity Low_complexity 1 95 0 3 1162 1041 132 0 0 chr9 75723963 75724130 -48352042 + (TTTTC)n Simple_repeat Simple_repeat 3 169 0 3 1162 2182 210 66 56 chr9 75724819 75725529 -48350643 + RMER1B Other Other 148 1066 0 3 1162 1046 201 54 0 chr9 75725941 75726145 -48350027 - URR1A DNA MER1_type 0 226 12 3 1162 21 0 0 0 chr9 75726870 75726891 -48349281 + AT_rich Low_complexity Low_complexity 1 21 0 3 1162 267 31 0 0 chr9 75726938 75726970 -48349202 + (CTA)n Simple_repeat Simple_repeat 1 32 0 3 1162 1425 236 325 7 chr9 75727023 75727577 -48348595 - RMER1C Other Other -148 1194 465 3 1162 26 48 0 45 chr9 75727671 75727737 -48348435 + AT_rich Low_complexity Low_complexity 1 63 0 3 1162 36 0 0 0 chr9 75727931 75727967 -48348205 + AT_rich Low_complexity Low_complexity 1 36 0 3 1162 624 87 0 0 chr9 75728054 75728146 -48348026 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1162 354 285 81 81 chr9 75728176 75728461 -48347711 - Lx9 LINE L1 -206 7438 7153 3 1162 1089 136 0 0 chr9 75728461 75728638 -48347534 + (TTC)n Simple_repeat Simple_repeat 2 178 0 3 1162 354 285 81 81 chr9 75728638 75728684 -48347488 - Lx9 LINE L1 -492 7152 7107 3 1162 757 310 121 36 chr9 75728685 75729395 -48346777 - Lx9 LINE L1 -953 6691 5805 3 1162 233 238 16 0 chr9 75729393 75729456 -48346716 - Lx9 LINE L1 -438 5409 5346 3 1162 4195 243 68 45 chr9 75729467 75731488 -48344684 - Lx9 LINE L1 -2943 2904 839 3 1162 444 153 0 0 chr9 75732152 75732237 -48343935 + (TA)n Simple_repeat Simple_repeat 2 86 0 3 1162 207 0 0 0 chr9 75732361 75732384 -48343788 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 1162 446 0 19 0 chr9 75732391 75732445 -48343727 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 3 1162 32 91 0 0 chr9 75732964 75733052 -48343120 + AT_rich Low_complexity Low_complexity 1 88 0 3 1162 572 353 93 13 chr9 75733094 75733886 -48342286 - L2a LINE L2 -3 3423 2572 3 1162 215 31 0 30 chr9 75733910 75733943 -48342229 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 3 1162 352 284 74 0 chr9 75734786 75734881 -48341291 - B1F1 SINE Alu -46 103 2 3 1162 457 299 34 98 chr9 75734925 75735129 -48341043 - B4A SINE B4 0 292 102 3 1162 1688 217 81 24 chr9 75735134 75735555 -48340617 - RLTR20C LTR ERVK 0 534 90 3 1162 360 250 11 11 chr9 75735663 75735752 -48340420 - B4A SINE B4 -200 92 4 3 1162 22 103 0 0 chr9 75736087 75736165 -48340007 + AT_rich Low_complexity Low_complexity 1 78 0 3 1162 228 326 92 0 chr9 75736320 75736418 -48339754 - Lx8 LINE L1 -285 7188 7082 3 1162 771 278 99 4 chr9 75736431 75736684 -48339488 - Lx8 LINE L1 -467 7006 6730 3 1162 461 274 32 0 chr9 75736681 75736828 -48339344 - Lx8 LINE L1 -813 6831 6563 3 1162 1403 206 40 85 chr9 75736834 75737233 -48338939 - RLTR26 LTR ERVK 0 642 262 3 1162 1491 292 82 29 chr9 75737243 75738372 -48337800 - Lx8 LINE L1 -1149 6324 5139 3 1162 393 22 0 0 chr9 75739772 75739818 -48336354 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1162 705 82 0 0 chr9 75742382 75742479 -48333693 + (GGA)n Simple_repeat Simple_repeat 1 97 0 3 1162 255 61 0 0 chr9 75742693 75742726 -48333446 + (ATATG)n Simple_repeat Simple_repeat 3 35 0 3 1162 518 189 72 0 chr9 75742825 75742936 -48333236 - B3A SINE B2 -79 119 1 3 1162 361 211 19 112 chr9 75742936 75743041 -48333131 - B4 SINE B4 -197 95 1 3 1162 1263 214 197 0 chr9 75743788 75743903 -48332269 + MTD LTR MaLR 1 152 -267 3 1162 396 0 0 0 chr9 75743903 75743947 -48332225 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1162 1263 214 197 0 chr9 75743947 75744181 -48331991 + MTD LTR MaLR 153 418 -1 3 1162 22 35 0 0 chr9 75744379 75744408 -48331764 + AT_rich Low_complexity Low_complexity 1 29 0 3 1162 216 158 0 0 chr9 75745484 75745522 -48330650 + GA-rich Low_complexity Low_complexity 1 38 0 3 1162 591 231 0 0 chr9 75745523 75745657 -48330515 - Lx6 LINE L1 -137 7323 7190 3 1162 231 103 0 0 chr9 75747008 75747047 -48329125 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1162 468 123 0 0 chr9 75747567 75747640 -48328532 + (CGTG)n Simple_repeat Simple_repeat 3 75 0 3 1162 21 0 0 0 chr9 75748165 75748186 -48327986 + AT_rich Low_complexity Low_complexity 1 21 0 4 1162 455 253 148 25 chr9 75748462 75748705 -48327467 + B4 SINE B4 1 273 -19 4 1162 360 0 0 0 chr9 75749851 75749891 -48326281 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1162 435 19 0 0 chr9 75749891 75749942 -48326230 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1162 372 104 0 0 chr9 75749943 75750010 -48326162 + (CAGA)n Simple_repeat Simple_repeat 4 70 0 4 1162 408 88 0 0 chr9 75750303 75750360 -48325812 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1162 31 0 0 0 chr9 75750387 75750418 -48325754 + AT_rich Low_complexity Low_complexity 1 31 0 4 1162 326 281 26 17 chr9 75750588 75750704 -48325468 - Lx7 LINE L1 -370 7326 7210 4 1162 197 108 0 26 chr9 75750763 75750801 -48325371 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 4 1162 1804 210 96 8 chr9 75750807 75751224 -48324948 - Lx6 LINE L1 -194 7502 6790 4 1162 339 314 60 71 chr9 75752090 75752272 -48323900 + L1MEe LINE L1 1498 1677 -4489 4 1162 297 270 98 73 chr9 75752525 75752553 -48323619 - MER58A DNA MER1_type -11 213 186 4 1162 1308 91 21 0 chr9 75752553 75752739 -48323433 + B2_Mm2 SINE B2 4 193 -2 4 1162 297 270 98 73 chr9 75752739 75752874 -48323298 - MER58A DNA MER1_type -39 185 46 4 1162 337 352 33 22 chr9 75753140 75753320 -48322852 + L1MEe LINE L1 2221 2402 -3744 4 1162 636 258 111 25 chr9 75753378 75753577 -48322595 + B3 SINE B2 1 216 0 4 1162 270 298 83 0 chr9 75754065 75754149 -48322023 + B1F2 SINE Alu 1 91 -58 4 1162 7282 135 15 4 chr9 75754155 75755420 -48320752 + L1_Mur2 LINE L1 3842 5120 -757 4 1162 225 337 90 85 chr9 75756292 75756480 -48319692 - MER20 DNA MER1_type -2 217 29 4 1162 476 271 63 44 chr9 75757210 75757368 -48318804 + RSINE1 SINE B4 5 165 0 4 1162 22 35 0 0 chr9 75757826 75757855 -48318317 + AT_rich Low_complexity Low_complexity 1 29 0 4 1162 1082 247 98 28 chr9 75757928 75758281 -48317891 - MLT1G3 LTR MaLR -57 522 165 4 1162 251 292 103 9 chr9 75758305 75758412 -48317760 - MLT1G3 LTR MaLR -460 119 3 4 1162 900 104 0 0 chr9 75759214 75759348 -48316824 + (CAG)n Simple_repeat Simple_repeat 1 134 0 4 1163 7272 59 13 10 chr9 75760210 75761349 -48314823 - L1_Mus1 LINE L1 0 6567 5425 4 1163 224 140 0 39 chr9 75761499 75761551 -48314621 + CT-rich Low_complexity Low_complexity 3 52 0 4 1163 350 270 57 28 chr9 75761554 75761695 -48314477 - B1F SINE Alu 0 149 5 4 1163 389 350 48 48 chr9 75762321 75762633 -48313539 - Lx8 LINE L1 -2 7471 7160 4 1163 779 112 0 26 chr9 75762773 75762929 -48313243 + (CCAA)n Simple_repeat Simple_repeat 4 155 0 4 1163 251 322 32 16 chr9 75763773 75763896 -48312276 - L1M2 LINE L1 -407 5893 5769 4 1163 246 273 91 113 chr9 75763903 75763937 -48312235 - B3A SINE B2 0 198 17 4 1163 689 224 20 59 chr9 75763937 75764089 -48312083 - RSINE1 SINE B4 -2 163 18 4 1163 704 299 52 16 chr9 75764131 75764570 -48311602 - L1M2 LINE L1 -581 5719 5265 4 1163 425 243 42 28 chr9 75764598 75764742 -48311430 + L1M2 LINE L1 5131 5276 -867 4 1163 1685 267 18 13 chr9 75764788 75765183 -48310989 + MT2A LTR ERVL 3 399 -134 4 1163 36249 29 1 0 chr9 75765744 75772595 -48303577 - L1Md_T LINE L1 0 6585 1 4 1163 976 103 20 0 chr9 75772884 75773030 -48303142 - B1_Mur3 SINE Alu 0 149 1 4 1163 390 21 0 0 chr9 75773190 75773237 -48302935 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1163 535 219 11 0 chr9 75773933 75774111 -48302061 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1163 250 170 48 39 chr9 75774115 75774219 -48301953 + (TA)n Simple_repeat Simple_repeat 1 105 0 4 1163 189 307 155 17 chr9 75776167 75776283 -48299889 - MIRb SINE MIR -34 234 103 4 1163 189 0 0 0 chr9 75776387 75776408 -48299764 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1163 21 71 0 0 chr9 75776748 75776790 -48299382 + AT_rich Low_complexity Low_complexity 1 42 0 4 1163 349 222 209 11 chr9 75776791 75776973 -48299199 - Lx9 LINE L1 -23 7621 7404 4 1163 665 257 19 52 chr9 75776972 75777148 -48299024 - Lx9 LINE L1 -450 7194 7025 4 1163 1576 87 9 9 chr9 75777148 75777381 -48298791 - L1_Mus3 LINE L1 -1 6637 6405 4 1163 665 257 19 52 chr9 75777381 75777417 -48298755 - Lx9 LINE L1 -620 7024 6989 4 1163 5701 204 51 11 chr9 75777441 75778635 -48297537 - Lx5 LINE L1 0 7050 5809 4 1163 17220 147 33 12 chr9 75778637 75779357 -48296815 - L1_Mur2 LINE L1 -1424 4453 3717 4 1163 1145 76 0 0 chr9 75779357 75779501 -48296671 - B1_Mm SINE Alu -2 145 2 4 1163 17220 159 30 17 chr9 75779501 75782293 -48293879 - L1_Mur2 LINE L1 -2161 3716 896 4 1163 199 254 55 0 chr9 75782737 75782792 -48293380 + L2b LINE L2 3317 3374 -1 4 1163 27 0 0 0 chr9 75783503 75783530 -48292642 + AT_rich Low_complexity Low_complexity 1 27 0 4 1163 21 0 0 0 chr9 75785362 75785383 -48290789 + AT_rich Low_complexity Low_complexity 1 21 0 4 1163 1218 101 10 64 chr9 75785440 75785642 -48290530 + B2_Mm2 SINE B2 1 191 -4 4 1163 335 302 79 90 chr9 75786205 75786383 -48289789 - MER20 DNA MER1_type -3 216 41 4 1163 3494 75 6 6 chr9 75787074 75787547 -48288625 - L1_Mus3 LINE L1 0 6638 6166 4 1163 222 0 25 50 chr9 75788218 75788258 -48287914 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1163 244 229 3 3 chr9 75788378 75788452 -48287720 + L1M LINE L1 5346 5419 -745 4 1163 2828 204 37 13 chr9 75788778 75789314 -48286858 - Lx6 LINE L1 0 7460 6912 4 1163 3014 234 50 15 chr9 75789338 75790024 -48286148 - Lx6 LINE L1 -610 6850 6141 4 1163 5910 162 61 27 chr9 75790028 75791468 -48284704 + Lx6 LINE L1 4675 6153 -1307 4 1163 441 0 0 0 chr9 75791601 75791650 -48284522 + (TATG)n Simple_repeat Simple_repeat 2 50 0 4 1163 1132 155 151 0 chr9 75791650 75791882 -48284290 - Lx3A LINE L1 -11 6970 6704 4 1163 1226 34 0 13 chr9 75792090 75792240 -48283932 - B1_Mus1 SINE Alu 0 148 1 4 1163 1361 205 37 20 chr9 75792828 75793126 -48283046 + Lx6 LINE L1 7064 7366 -330 4 1163 866 132 6 23 chr9 75793146 75793317 -48282855 + CT-rich Low_complexity Low_complexity 2 169 0 4 1163 453 116 0 0 chr9 75793318 75793387 -48282785 + (TCC)n Simple_repeat Simple_repeat 2 70 0 4 1163 958 219 68 48 chr9 75793389 75793725 -48282447 + Lx6 LINE L1 7354 7696 0 4 1163 180 111 0 0 chr9 75793921 75793948 -48282224 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 1163 2654 288 53 73 chr9 75793970 75795045 -48281127 + Lx9 LINE L1 6404 7456 -188 4 1163 297 0 0 0 chr9 75795045 75795078 -48281094 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1163 520 154 33 0 chr9 75795083 75795174 -48280998 + Lx9 LINE L1 6949 7042 -602 4 1163 506 336 85 49 chr9 75795750 75795997 -48280175 + B4 SINE B4 3 258 -34 4 1163 306 0 0 0 chr9 75796002 75796036 -48280136 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1163 221 178 27 0 chr9 75796051 75796124 -48280048 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 4 1163 4385 93 17 9 chr9 75796584 75797215 -48278957 + Lx LINE L1 6013 6648 -6 4 1163 313 317 78 12 chr9 75797224 75797467 -48278705 + L1M4 LINE L1 3343 3601 -2545 4 1163 374 304 36 147 chr9 75797667 75798054 -48278118 + L1M4 LINE L1 3786 4145 -2001 4 1163 1755 259 57 49 chr9 75798054 75798724 -48277448 + L1_Rod LINE L1 1994 2668 -3179 4 1163 257 238 10 29 chr9 75799579 75799683 -48276489 + (TGGG)n Simple_repeat Simple_repeat 1 102 0 4 1163 299 357 42 74 chr9 75799683 75799967 -48276205 - B4A SINE B4 -3 289 15 4 1163 473 147 135 10 chr9 75800042 75800138 -48276034 + L1_Mur3 LINE L1 4515 4622 -1258 4 1163 260 267 22 0 chr9 75800136 75800226 -48275946 + Lx6 LINE L1 7365 7456 -4 4 1163 1728 237 39 64 chr9 75801240 75801821 -48274351 - L1_Mur3 LINE L1 -1870 4010 3446 4 1163 290 269 103 0 chr9 75801923 75802001 -48274171 - B1F SINE Alu -34 115 30 4 1163 1577 315 86 24 chr9 75802207 75802868 -48273304 - Lx8 LINE L1 -448 7025 6324 4 1163 1650 273 127 39 chr9 75802849 75803489 -48272683 - Lx8 LINE L1 -357 7116 6421 4 1163 252 274 59 69 chr9 75803599 75803701 -48272471 - L1MD2 LINE L1 -5493 1054 954 4 1163 931 174 4 4 chr9 75803731 75803969 -48272203 + CT-rich Low_complexity Low_complexity 1 238 0 4 1163 355 388 101 31 chr9 75804105 75804422 -48271750 - L1MD2 LINE L1 -5853 694 356 4 1163 1289 171 8 19 chr9 75804469 75804737 -48271435 + RMER10B LTR ERVL 1 265 -133 4 1163 943 171 8 8 chr9 75804755 75805023 -48271149 + CT-rich Low_complexity Low_complexity 1 268 0 4 1163 259 209 278 0 chr9 75805029 75805144 -48271028 + RMER10B LTR ERVL 197 343 -55 4 1163 7637 84 20 9 chr9 75805154 75806211 -48269961 - Lx LINE L1 0 6654 5587 4 1163 265 150 0 0 chr9 75806217 75806257 -48269915 + RMER10B LTR ERVL 352 391 -7 4 1163 950 233 29 49 chr9 75806309 75806553 -48269619 - MTD LTR MaLR -179 240 2 4 1163 190 184 26 0 chr9 75807824 75807862 -48268310 + MIRm SINE MIR 133 171 -105 4 1163 274 250 31 0 chr9 75809847 75809911 -48266261 - B1_Mur1 SINE Alu -5 144 79 4 1163 579 251 58 49 chr9 75809937 75810142 -48266030 - B3 SINE B2 -9 207 1 4 1163 389 306 91 29 chr9 75810659 75810855 -48265317 + MLT1F2 LTR MaLR 337 650 -4 4 1163 23 86 0 0 chr9 75810869 75810927 -48265245 + AT_rich Low_complexity Low_complexity 1 58 0 4 1163 1436 280 138 12 chr9 75810944 75811450 -48264722 - Lx8 LINE L1 -782 6691 6122 4 1163 2511 79 56 3 chr9 75811536 75811877 -48264295 + RLTR10D LTR ERVK 1 359 0 4 1163 397 307 8 16 chr9 75811881 75812010 -48264162 + Lx8 LINE L1 6881 7008 -465 4 1163 24 0 0 0 chr9 75812288 75812312 -48263860 + AT_rich Low_complexity Low_complexity 1 24 0 4 1163 475 337 62 15 chr9 75812552 75812811 -48263361 + Lx8 LINE L1 7047 7317 -156 4 1163 2374 105 14 3 chr9 75812901 75813263 -48262909 + L1_Mus3 LINE L1 6254 6619 -19 4 1163 365 0 22 0 chr9 75813263 75813308 -48262864 + (TAA)n Simple_repeat Simple_repeat 3 48 0 4 1163 29 0 0 0 chr9 75814439 75814468 -48261704 + AT_rich Low_complexity Low_complexity 1 29 0 4 1163 404 198 9 18 chr9 75815024 75815137 -48261035 - Lx9 LINE L1 0 7644 7533 4 1163 2727 246 34 49 chr9 75815193 75815967 -48260205 - Lx6 LINE L1 -1 7459 6698 4 1163 576 326 95 8 chr9 75815963 75816204 -48259968 - Lx8 LINE L1 -414 7059 6798 4 1163 771 83 45 76 chr9 75816490 75816647 -48259525 - L1_Mus4 LINE L1 -2 6634 6483 4 1163 1258 135 84 13 chr9 75816647 75816782 -48259390 + RLTR20B2 LTR ERVK 320 467 -93 4 1163 306 0 0 0 chr9 75816782 75816816 -48259356 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1163 306 0 0 0 chr9 75816816 75816849 -48259323 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1163 1258 135 84 13 chr9 75816849 75816937 -48259235 + RLTR20B2 LTR ERVK 468 559 -1 4 1163 236 310 17 0 chr9 75817248 75817306 -48258866 - B1F2 SINE Alu -90 59 1 5 1163 2340 85 11 53 chr9 75817535 75817896 -48258276 + L1_Mus2 LINE L1 6221 6566 0 5 1163 588 291 131 42 chr9 75818147 75818536 -48257636 - MTE2a LTR MaLR 0 421 1 5 1163 258 30 0 0 chr9 75818657 75818668 -48257504 + (TA)n Simple_repeat Simple_repeat 2 12 0 5 1163 393 75 0 0 chr9 75818668 75818721 -48257451 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1163 258 30 0 0 chr9 75818721 75818742 -48257430 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 1163 502 110 0 40 chr9 75818758 75818834 -48257338 - U4 snRNA snRNA -72 73 1 5 1163 680 319 19 10 chr9 75819550 75819759 -48256413 - B3 SINE B2 -5 211 1 5 1163 257 271 17 0 chr9 75819820 75819879 -48256293 + RMER15 LTR ERVL 1 60 -515 5 1163 753 322 105 27 chr9 75819918 75820291 -48255881 + RMER15 LTR ERVL 27 428 -147 5 1163 549 304 44 34 chr9 75820292 75820496 -48255676 - ORR1D2 LTR MaLR 0 370 165 5 1163 664 68 13 58 chr9 75820500 75820655 -48255517 + (GAA)n Simple_repeat Simple_repeat 1 148 0 5 1163 651 264 38 6 chr9 75820657 75820817 -48255355 - ORR1D2 LTR MaLR -189 181 17 5 1163 265 386 10 10 chr9 75820808 75820910 -48255262 - RLTR18B LTR ERVK -5 507 406 5 1163 40373 14 2 6 chr9 75820912 75827079 -48249093 - L1Md_A LINE L1 0 6582 446 5 1163 645 238 169 106 chr9 75827079 75827637 -48248535 - RLTR18B LTR ERVK -87 529 1 5 1163 1362 168 12 39 chr9 75827660 75827914 -48248258 - ORR1D2-int LTR MaLR 0 1370 1124 5 1163 1426 180 15 12 chr9 75827914 75828173 -48247999 + RMER5 LTR ERV1 1 260 -274 5 1163 506 211 89 0 chr9 75828173 75828296 -48247876 - ORR1D2 LTR MaLR -236 134 1 5 1163 571 215 57 51 chr9 75828296 75828444 -48247728 + RMER15 LTR ERVL 425 573 -2 5 1163 438 246 5 5 chr9 75828568 75828752 -48247420 + CT-rich Low_complexity Low_complexity 1 184 0 5 1163 982 117 0 14 chr9 75828753 75828900 -48247272 - B1_Mur4 SINE Alu -3 147 3 5 1163 208 28 83 0 chr9 75829425 75829461 -48246711 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 5 1163 21 71 0 0 chr9 75829720 75829762 -48246410 + AT_rich Low_complexity Low_complexity 1 42 0 5 1163 1699 173 96 22 chr9 75830347 75830702 -48245470 + MTD LTR MaLR 20 400 -19 5 1163 23 0 0 71 chr9 75831727 75831769 -48244403 + AT_rich Low_complexity Low_complexity 1 39 0 5 1163 6038 138 26 12 chr9 75832959 75833996 -48242176 + Lx3B LINE L1 5919 6969 -4 5 1163 26 30 0 0 chr9 75834005 75834038 -48242134 + AT_rich Low_complexity Low_complexity 1 33 0 5 1163 231 362 46 98 chr9 75834051 75834204 -48241968 + ID_B1 SINE B4 80 224 0 5 1163 245 271 0 0 chr9 75834205 75834275 -48241897 + A-rich Low_complexity Low_complexity 1 70 0 5 1163 390 348 43 43 chr9 75834787 75834949 -48241223 - RSINE1 SINE B4 0 165 4 5 1163 289 316 17 35 chr9 75835172 75835346 -48240826 - HAL1 LINE L1 -727 1780 1610 5 1163 862 78 0 0 chr9 75835508 75835624 -48240548 + B1_Mm SINE Alu 31 146 -1 5 1163 297 0 0 0 chr9 75835624 75835657 -48240515 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 1163 2373 191 80 5 chr9 75835980 75836544 -48239628 - RMER1B Other Other -9 1057 452 5 1163 238 225 25 0 chr9 75836654 75836734 -48239438 + T-rich Low_complexity Low_complexity 3 84 0 5 1163 21 57 0 0 chr9 75836829 75836864 -48239308 + AT_rich Low_complexity Low_complexity 1 35 0 5 1163 474 343 87 45 chr9 75837219 75837506 -48238666 - MLT1H LTR MaLR -198 351 53 5 1163 438 269 66 15 chr9 75837851 75837987 -48238185 + B3A SINE B2 74 216 0 5 1163 1204 233 126 56 chr9 75838248 75838589 -48237583 + ORR1D2 LTR MaLR 6 370 0 5 1163 614 242 17 0 chr9 75838589 75838708 -48237464 - B1_Mur1 SINE Alu -16 133 13 5 1163 26 50 0 0 chr9 75838952 75838992 -48237180 + AT_rich Low_complexity Low_complexity 1 40 0 5 1163 7012 116 24 19 chr9 75839032 75840660 -48235512 + Lx LINE L1 5001 6646 -8 5 1163 402 147 8 80 chr9 75840660 75840760 -48235412 + B2_Mm2 SINE B2 102 195 0 5 1163 1428 328 98 25 chr9 75840770 75840978 -48235194 - Lx8 LINE L1 -237 7236 6996 5 1163 468 0 0 0 chr9 75840978 75841030 -48235142 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1163 1428 328 98 25 chr9 75841030 75841286 -48234886 - Lx8 LINE L1 -478 6995 6736 5 1163 528 30 0 0 chr9 75841286 75841352 -48234820 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1163 1428 329 93 27 chr9 75841352 75841847 -48234325 - Lx8 LINE L1 -738 6735 6220 5 1163 459 129 32 16 chr9 75841883 75842009 -48234163 + (TCTCTG)n Simple_repeat Simple_repeat 3 130 0 5 1163 26 0 0 0 chr9 75842062 75842088 -48234084 + AT_rich Low_complexity Low_complexity 1 26 0 5 1163 686 167 52 15 chr9 75842368 75842502 -48233670 + MTD LTR MaLR 279 417 -2 5 1163 998 197 234 24 chr9 75843390 75843703 -48232469 - RMER15 LTR ERVL -65 510 4 5 1163 1390 229 0 11 chr9 75843704 75843964 -48232208 - MTD LTR MaLR -162 257 1 5 1163 384 143 0 0 chr9 75843964 75844027 -48232145 - MTD-int LTR MaLR 0 1258 1196 5 1163 338 274 101 22 chr9 75844017 75844155 -48232017 - MTD-int LTR MaLR -1104 154 6 5 1163 610 228 115 42 chr9 75844164 75844422 -48231750 - MTD LTR MaLR -8 411 1 5 1163 373 378 171 9 chr9 75844904 75845238 -48230934 - LTR16A LTR ERVL 0 451 64 5 1163 798 180 16 0 chr9 75845295 75845423 -48230749 - B3 SINE B2 -86 130 1 5 1163 1128 90 6 6 chr9 75845540 75845707 -48230465 - Lx2B LINE L1 -609 6391 6225 5 1163 3824 121 20 13 chr9 75845707 75846308 -48229864 + Lx2B LINE L1 6394 6998 -2 5 1163 195 69 0 0 chr9 75847436 75847465 -48228707 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1163 552 252 26 39 chr9 75847472 75847625 -48228547 - RSINE1 SINE B4 -12 153 3 5 1163 227 402 35 9 chr9 75848029 75848142 -48228030 + MER5A DNA MER1_type 74 189 0 5 1163 242 262 94 58 chr9 75848612 75848750 -48227422 + Tigger8 DNA MER2_type 433 575 -91 5 1163 26 64 0 0 chr9 75850410 75850457 -48225715 + AT_rich Low_complexity Low_complexity 1 47 0 5 1163 195 129 0 0 chr9 75850496 75850527 -48225645 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1163 21 0 0 0 chr9 75850582 75850603 -48225569 + AT_rich Low_complexity Low_complexity 1 21 0 5 1163 216 161 17 67 chr9 75851130 75851190 -48224982 + GA-rich Low_complexity Low_complexity 4 60 0 5 1163 452 380 56 101 chr9 75851398 75851884 -48224288 - MLT1G3 LTR MaLR -60 535 72 5 1163 737 319 78 26 chr9 75851944 75852214 -48223958 - B4 SINE B4 0 292 9 5 1163 441 54 0 0 chr9 75852303 75852359 -48223813 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1163 396 0 0 0 chr9 75852359 75852403 -48223769 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1163 540 292 54 20 chr9 75852403 75852550 -48223622 - B3A SINE B2 -44 154 3 5 1163 325 244 0 13 chr9 75852554 75852633 -48223539 - L1MEg LINE L1 -4136 1948 1871 5 1163 274 299 59 49 chr9 75853045 75853147 -48223025 - B1F SINE Alu -34 115 13 5 1163 371 145 14 0 chr9 75853255 75853324 -48222848 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1163 477 0 0 0 chr9 75853746 75853799 -48222373 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 5 1163 225 0 0 0 chr9 75854090 75854115 -48222057 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1163 370 279 28 39 chr9 75854700 75854879 -48221293 - BLACKJACK DNA AcHobo -1480 1464 1288 5 1163 1203 322 123 27 chr9 75855180 75855256 -48220916 - BLACKJACK DNA AcHobo -2200 744 666 5 1163 342 0 0 0 chr9 75855256 75855294 -48220878 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1163 1203 322 123 27 chr9 75855294 75855890 -48220282 - BLACKJACK DNA AcHobo -2279 665 8 5 1163 31 44 0 0 chr9 75856131 75856176 -48219996 + AT_rich Low_complexity Low_complexity 1 45 0 5 1163 321 186 0 0 chr9 75856218 75856288 -48219884 + CT-rich Low_complexity Low_complexity 2 71 0 5 1163 258 105 0 0 chr9 75856335 75856373 -48219799 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1163 885 281 33 16 chr9 75856416 75856658 -48219514 - B4A SINE B4 -44 248 3 5 1163 358 294 126 53 chr9 75857161 75857351 -48218821 + B3 SINE B2 2 205 -11 5 1163 881 125 0 0 chr9 75857374 75857502 -48218670 - B1_Mur4 SINE Alu -22 128 1 5 1163 1209 62 0 0 chr9 75857755 75857901 -48218271 - B1_Mus1 SINE Alu 0 148 3 5 1163 422 77 0 0 chr9 75858556 75858621 -48217551 + Lx2 LINE L1 6933 6997 0 5 1163 424 307 81 25 chr9 75859679 75859876 -48216296 + B3 SINE B2 5 212 -4 5 1163 521 341 0 0 chr9 75860607 75860745 -48215427 - B1F1 SINE Alu -11 138 1 5 1163 234 191 0 0 chr9 75860758 75860805 -48215367 + T-rich Low_complexity Low_complexity 2 48 0 5 1163 615 308 66 22 chr9 75861072 75861391 -48214781 + Lx8 LINE L1 6900 7232 -241 5 1163 268 196 30 20 chr9 75861904 75862003 -48214169 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 1163 24 0 0 0 chr9 75862003 75862027 -48214145 + AT_rich Low_complexity Low_complexity 1 24 0 5 1163 468 123 0 0 chr9 75862106 75862179 -48213993 + (TCC)n Simple_repeat Simple_repeat 3 75 0 5 1163 300 231 181 50 chr9 75863949 75864131 -48212041 + L1MA5 LINE L1 5710 5915 -385 5 1163 1243 251 111 43 chr9 75865069 75865439 -48210733 + MTD LTR MaLR 25 419 0 5 1163 511 334 121 22 chr9 75866961 75867417 -48208755 - L1MEg LINE L1 -4133 1951 1451 5 1163 261 0 0 0 chr9 75867528 75867557 -48208615 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1163 263 138 0 33 chr9 75867575 75867635 -48208537 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 5 1163 27 49 0 0 chr9 75867924 75867965 -48208207 + AT_rich Low_complexity Low_complexity 1 41 0 5 1163 311 291 78 16 chr9 75868143 75868272 -48207900 - L1MEg LINE L1 -5122 962 826 5 1163 763 331 19 31 chr9 75868369 75868626 -48207546 - B4A SINE B4 -2 290 37 5 1163 826 321 65 42 chr9 75868626 75869010 -48207162 + MTD LTR MaLR 1 393 -26 5 1163 863 19 9 0 chr9 75869185 75869290 -48206882 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 5 1163 247 263 42 0 chr9 75869988 75870106 -48206066 - L1MA6 LINE L1 -116 6184 6062 5 1163 191 116 0 44 chr9 75870198 75870243 -48205929 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 1163 280 278 52 9 chr9 75870770 75870886 -48205286 - Lx9 LINE L1 -146 7498 7378 5 1163 604 294 54 41 chr9 75870920 75871214 -48204958 - Lx9 LINE L1 -370 7274 6977 5 1163 1211 266 52 25 chr9 75871271 75871675 -48204497 + Lx9 LINE L1 6545 6959 -685 5 1163 303 286 11 34 chr9 75872040 75872163 -48204009 - MIR SINE MIR -145 123 11 5 1163 234 329 38 0 chr9 75873639 75873718 -48202454 + ID4_ SINE ID 2 83 0 6 1163 296 48 0 23 chr9 75873964 75874007 -48202165 + (GGA)n Simple_repeat Simple_repeat 2 43 0 6 1163 222 163 0 23 chr9 75874007 75874051 -48202121 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1163 2577 253 39 16 chr9 75874051 75874778 -48201394 - Lx7 LINE L1 -388 7308 6566 6 1163 291 215 22 17 chr9 75874826 75874899 -48201273 - B3A SINE B2 -136 80 2 6 1163 785 257 63 24 chr9 75875018 75875225 -48200947 - B3A SINE B2 -1 215 1 6 1163 1726 252 164 37 chr9 75875424 75875963 -48200209 - Lx9 LINE L1 -15 7629 6983 6 1163 351 0 0 0 chr9 75875963 75876002 -48200170 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1163 1726 252 164 37 chr9 75876002 75876307 -48199865 - Lx9 LINE L1 -662 6982 6677 6 1163 198 91 0 0 chr9 75876388 75876421 -48199751 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1163 22 35 0 0 chr9 75876782 75876811 -48199361 + AT_rich Low_complexity Low_complexity 1 29 0 6 1163 26 0 0 0 chr9 75877919 75877945 -48198227 + AT_rich Low_complexity Low_complexity 1 26 0 6 1163 1383 151 4 9 chr9 75879047 75879274 -48196898 + URR1A DNA MER1_type 1 226 0 6 1163 23 33 0 0 chr9 75879360 75879390 -48196782 + AT_rich Low_complexity Low_complexity 1 30 0 6 1163 274 210 45 90 chr9 75879447 75879625 -48196547 + (TATAA)n Simple_repeat Simple_repeat 3 172 0 6 1163 201 274 39 84 chr9 75879591 75879770 -48196402 + (ATGTG)n Simple_repeat Simple_repeat 5 175 0 6 1163 966 205 37 5 chr9 75880159 75880350 -48195822 - URR1A DNA MER1_type -29 197 1 6 1163 193 141 70 0 chr9 75881539 75881610 -48194562 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 1163 21 0 0 0 chr9 75881950 75881971 -48194201 + AT_rich Low_complexity Low_complexity 1 21 0 6 1163 416 318 46 11 chr9 75881991 75882166 -48194006 + MER5A DNA MER1_type 4 184 -5 6 1163 1421 256 28 86 chr9 75884197 75884701 -48191471 - Lx6 LINE L1 -15 7681 6957 6 1163 1409 200 75 0 chr9 75884699 75885004 -48191168 + Lx6 LINE L1 6540 6867 -593 6 1163 279 143 0 0 chr9 75888068 75888110 -48188062 - RMER30 DNA MER1_type -151 51 10 6 1163 316 320 104 6 chr9 75888504 75888677 -48187495 - L2a LINE L2 -3 3423 3234 6 1163 1959 137 46 6 chr9 75888733 75889057 -48187115 + Lx3C LINE L1 6591 6927 -49 6 1164 371 249 94 26 chr9 75890865 75891018 -48185154 + B4 SINE B4 77 277 -15 6 1164 246 32 0 0 chr9 75891026 75891057 -48185115 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1164 222 280 12 74 chr9 75891861 75891942 -48184230 - ID SINE ID -141 83 8 6 1164 336 184 0 30 chr9 75891961 75892062 -48184110 + CT-rich Low_complexity Low_complexity 2 99 0 6 1164 264 279 115 2 chr9 75892072 75892161 -48184011 - PB1 SINE Alu -2 125 26 6 1164 705 251 57 81 chr9 75892469 75892841 -48183331 - L1_Rod LINE L1 -1181 4666 4304 6 1164 22 0 0 0 chr9 75893260 75893282 -48182890 + AT_rich Low_complexity Low_complexity 1 22 0 6 1164 243 0 0 0 chr9 75894005 75894032 -48182140 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1164 515 289 18 36 chr9 75894041 75894206 -48181966 - RSINE1 SINE B4 -1 164 3 6 1164 456 35 0 0 chr9 75895414 75895472 -48180700 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1164 222 62 0 0 chr9 75895694 75895726 -48180446 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1164 363 153 0 0 chr9 75896083 75896162 -48180010 - RMER1B Other Other -13 1053 998 6 1164 8251 34 1 1 chr9 75896256 75897394 -48178778 - L1Md_F2 LINE L1 -9 6573 5436 6 1164 321 204 258 11 chr9 75897394 75897483 -48178689 - RMER1B Other Other -62 1004 894 6 1164 2628 172 54 20 chr9 75897483 75897982 -48178190 - RMER20A LTR ERVK 0 516 1 6 1164 315 138 60 30 chr9 75897983 75898050 -48178122 - RMER1B Other Other -166 900 832 6 1164 351 0 0 0 chr9 75899202 75899241 -48176931 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1164 207 0 0 0 chr9 75899241 75899263 -48176909 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1164 468 146 12 0 chr9 75899273 75899355 -48176817 + RMER4B LTR ERVK 17 99 -486 6 1164 548 343 234 19 chr9 75899355 75899776 -48176396 + Lx8 LINE L1 6729 7239 -234 6 1164 889 291 118 45 chr9 75900757 75901442 -48174730 - L1MA4 LINE L1 -270 6030 5296 6 1164 1494 238 58 6 chr9 75901775 75902121 -48174051 - ORR1D2 LTR MaLR 0 370 7 6 1164 3512 239 145 57 chr9 75902127 75903384 -48172788 - ORR1D2-int LTR MaLR 0 1370 3 6 1164 1332 28 75 53 chr9 75903404 75903573 -48172599 + B2_Mm1a SINE B2 2 160 -33 6 1164 351 0 0 0 chr9 75903573 75903612 -48172560 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 1164 1332 28 75 53 chr9 75903612 75903629 -48172543 + B2_Mm1a SINE B2 161 191 -2 6 1164 602 273 233 26 chr9 75903630 75903922 -48172250 - ORR1D2 LTR MaLR -13 357 1 6 1164 30 45 0 0 chr9 75904213 75904257 -48171915 + AT_rich Low_complexity Low_complexity 1 44 0 6 1164 297 75 0 0 chr9 75904425 75904465 -48171707 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 1164 21 57 0 0 chr9 75904597 75904632 -48171540 + AT_rich Low_complexity Low_complexity 1 35 0 6 1164 291 385 22 37 chr9 75905501 75905636 -48170536 - MLT1A1 LTR MaLR -60 348 216 6 1164 518 271 43 37 chr9 75905823 75905984 -48170188 + RSINE1 SINE B4 4 165 0 6 1164 929 254 85 42 chr9 75907161 75907514 -48168658 - RLTR11A2 LTR ERVK -14 513 146 6 1164 1569 184 60 100 chr9 75907518 75907887 -48168285 + ORR1B1 LTR MaLR 41 394 0 6 1164 485 236 60 34 chr9 75907887 75908036 -48168136 - RLTR11A2 LTR ERVK -374 153 1 6 1164 21 36 0 0 chr9 75908056 75908084 -48168088 + AT_rich Low_complexity Low_complexity 1 28 0 6 1164 1561 60 0 31 chr9 75908150 75908375 -48167797 + L1Md_F2 LINE L1 6365 6582 0 6 1164 22 35 0 0 chr9 75908445 75908474 -48167698 + AT_rich Low_complexity Low_complexity 1 29 0 6 1164 224 236 33 33 chr9 75908831 75908904 -48167268 + MIRc SINE MIR 58 130 -146 6 1164 405 0 0 0 chr9 75909241 75909286 -48166886 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1164 213 154 0 0 chr9 75910095 75910134 -48166038 + (TATG)n Simple_repeat Simple_repeat 2 40 0 6 1164 957 124 0 0 chr9 75910550 75910711 -48165461 + (GA)n Simple_repeat Simple_repeat 1 161 0 6 1164 247 322 58 42 chr9 75911488 75911608 -48164564 - MLT1E1A LTR MaLR -19 661 540 6 1164 468 0 0 0 chr9 75911895 75911947 -48164225 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 6 1164 279 302 0 0 chr9 75912924 75912987 -48163185 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1164 369 0 0 0 chr9 75914371 75914412 -48161760 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1164 554 281 57 33 chr9 75916638 75916848 -48159324 + Lx8 LINE L1 6480 6694 -779 6 1164 25 0 0 0 chr9 75916926 75916951 -48159221 + AT_rich Low_complexity Low_complexity 1 25 0 6 1164 3204 237 35 10 chr9 75916990 75917757 -48158415 - Lx9 LINE L1 -608 7036 6251 6 1164 309 151 0 0 chr9 75917829 75917882 -48158290 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1164 236 339 0 0 chr9 75918528 75918590 -48157582 - MLT1G3 LTR MaLR -194 401 340 6 1164 734 121 68 0 chr9 75919015 75919147 -48157025 + ORR1C1 LTR MaLR 1 141 -237 6 1164 22 35 0 0 chr9 75919373 75919402 -48156770 + AT_rich Low_complexity Low_complexity 1 29 0 6 1164 1156 68 0 20 chr9 75919428 75919579 -48156593 - B1_Mus1 SINE Alu 0 148 1 6 1164 29 78 0 0 chr9 75919732 75919796 -48156376 + AT_rich Low_complexity Low_complexity 1 64 0 6 1164 40 0 0 0 chr9 75923560 75923600 -48152572 + AT_rich Low_complexity Low_complexity 1 40 0 6 1164 1379 152 9 0 chr9 75924005 75924229 -48151943 + URR1A DNA MER1_type 1 226 0 6 1164 428 174 0 11 chr9 75924353 75924446 -48151726 + CT-rich Low_complexity Low_complexity 3 94 0 6 1164 23 68 0 0 chr9 75925024 75925068 -48151104 + AT_rich Low_complexity Low_complexity 1 44 0 6 1164 296 261 79 65 chr9 75926026 75926165 -48150007 - B1F1 SINE Alu 0 149 9 6 1164 3371 217 65 80 chr9 75926192 75927105 -48149067 - Lx6 LINE L1 0 7460 6562 6 1164 4442 127 12 16 chr9 75927765 75928452 -48147720 - Lx2 LINE L1 0 6997 6314 6 1164 404 239 0 0 chr9 75928738 75928809 -48147363 - URR1B DNA MER1_type -154 71 1 6 1164 1038 39 0 0 chr9 75928872 75929002 -48147170 + B1_Mus1 SINE Alu 14 143 -5 6 1164 630 135 0 0 chr9 75930323 75930427 -48145745 + (TCC)n Simple_repeat Simple_repeat 2 105 0 6 1164 1644 36 0 0 chr9 75931148 75931341 -48144831 + B2_Mm1t SINE B2 1 193 0 6 1164 278 348 45 9 chr9 75931611 75931735 -48144437 - MIR SINE MIR -58 150 25 6 1164 23 0 0 0 chr9 75932759 75932782 -48143390 + AT_rich Low_complexity Low_complexity 1 23 0 6 1164 270 252 9 15 chr9 75932818 75932891 -48143281 - ID4_ SINE ID -75 77 1 6 1164 369 0 0 0 chr9 75933907 75933948 -48142224 + (CAA)n Simple_repeat Simple_repeat 1 41 0 6 1164 294 29 0 0 chr9 75934218 75934253 -48141919 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1164 321 89 0 0 chr9 75934253 75934297 -48141875 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1164 976 94 58 0 chr9 75936853 75936991 -48139181 + B1_Mus2 SINE Alu 2 147 0 6 1164 918 88 0 0 chr9 75937028 75937175 -48138997 + (GA)n Simple_repeat Simple_repeat 2 148 0 6 1164 407 280 108 88 chr9 75937316 75937579 -48138593 + L1M2 LINE L1 2936 3165 -2978 6 1164 1151 82 0 0 chr9 75937579 75937725 -48138447 + B1_Mus2 SINE Alu 2 147 0 6 1164 407 280 108 88 chr9 75937725 75938064 -48138108 + L1M2 LINE L1 3166 3550 -2593 6 1164 295 316 38 6 chr9 75938145 75938304 -48137868 + L1_Mur3 LINE L1 3646 3809 -2071 6 1164 587 281 48 6 chr9 75938422 75938587 -48137585 - B4A SINE B4 -65 227 56 6 1164 958 85 0 0 chr9 75938628 75938758 -48137414 - B1_Mus1 SINE Alu -10 138 9 6 1164 401 267 12 0 chr9 75938755 75938841 -48137331 - ID_B1 SINE B4 -47 177 91 6 1164 22 0 0 0 chr9 75938976 75938998 -48137174 + AT_rich Low_complexity Low_complexity 1 22 0 6 1164 29 47 0 0 chr9 75939098 75939141 -48137031 + AT_rich Low_complexity Low_complexity 1 43 0 6 1164 477 228 178 41 chr9 75939157 75939326 -48136846 + B3A SINE B2 4 195 -3 6 1164 776 238 19 15 chr9 75940149 75940354 -48135818 - B3 SINE B2 -7 209 4 7 1164 288 294 139 0 chr9 75940594 75940774 -48135398 - Lx9 LINE L1 -211 7433 7229 7 1164 479 217 0 0 chr9 75940790 75940882 -48135290 - Lx9 LINE L1 -480 7164 7073 7 1164 215 237 0 26 chr9 75941224 75941302 -48134870 + CT-rich Low_complexity Low_complexity 2 77 0 7 1164 331 145 29 0 chr9 75941317 75941386 -48134786 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1164 265 278 176 0 chr9 75941788 75941896 -48134276 - Lx4B LINE L1 -6 7052 6926 7 1164 998 240 8 38 chr9 75941949 75942213 -48133959 - Lx9 LINE L1 -164 7480 7225 7 1164 4998 68 3 10 chr9 75942235 75942909 -48133263 - L1Md_F2 LINE L1 -3 6579 5911 7 1164 458 227 125 21 chr9 75943096 75943240 -48132932 + Lx7 LINE L1 7167 7325 -371 7 1164 241 183 56 0 chr9 75943261 75943332 -48132840 + T-rich Low_complexity Low_complexity 2 76 0 7 1164 430 317 118 60 chr9 75943508 75943689 -48132483 + L1M5 LINE L1 4155 4333 -1813 7 1164 910 169 39 6 chr9 75943689 75943867 -48132305 - B2_Mm2 SINE B2 -10 185 2 7 1164 430 317 118 60 chr9 75943867 75944168 -48132004 + L1M5 LINE L1 4334 4665 -1481 7 1164 272 313 29 35 chr9 75944273 75944445 -48131727 + L1MCa LINE L1 972 1142 -5366 7 1164 21 36 0 0 chr9 75944806 75944834 -48131338 + AT_rich Low_complexity Low_complexity 1 28 0 7 1164 1474 203 126 14 chr9 75945970 75946334 -48129838 + MTD LTR MaLR 1 405 -14 7 1164 298 251 249 30 chr9 75947172 75947373 -48128799 - Lx7 LINE L1 -35 7609 7365 7 1164 1368 322 89 18 chr9 75948884 75949570 -48126602 - Lx8 LINE L1 -3 7470 6736 7 1164 717 273 63 76 chr9 75949561 75950034 -48126138 - Lx7 LINE L1 -1712 5984 5506 7 1164 2656 299 55 25 chr9 75950079 75950318 -48125854 + Lx8 LINE L1 6023 6259 -1214 7 1164 180 77 0 0 chr9 75950318 75950344 -48125828 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1164 2656 299 55 25 chr9 75950344 75951119 -48125053 + Lx8 LINE L1 6260 7067 -406 7 1164 1110 332 22 29 chr9 75951139 75951583 -48124589 - Lx8 LINE L1 -859 6614 6174 7 1164 21 0 0 0 chr9 75951657 75951678 -48124494 + AT_rich Low_complexity Low_complexity 1 21 0 7 1164 4309 153 19 102 chr9 75951925 75952908 -48123264 - RLTR13D6 LTR ERVK 0 902 1 7 1164 35 0 0 0 chr9 75953073 75953108 -48123064 + AT_rich Low_complexity Low_complexity 1 35 0 7 1164 2383 131 50 0 chr9 75953110 75953491 -48122681 - Lx2 LINE L1 -4 6993 6594 7 1164 3122 139 109 8 chr9 75953491 75954098 -48122074 + L1_Mm LINE L1 3612 4279 -1604 7 1164 3999 43 47 8 chr9 75954259 75954752 -48121420 - LTRIS3 LTR ERV1 0 512 1 7 1164 2974 274 81 49 chr9 75955287 75956782 -48119390 + Lx8 LINE L1 3678 5212 -635 7 1164 252 0 0 0 chr9 75956782 75956810 -48119362 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1164 2974 274 81 49 chr9 75956810 75956863 -48119309 + Lx8 LINE L1 5213 5276 -571 7 1164 296 234 26 0 chr9 75956853 75956930 -48119242 - L1_Rod LINE L1 -1172 4675 4597 7 1164 351 168 58 10 chr9 75957429 75957516 -48118656 + PB1D9 SINE Alu 14 118 -9 7 1164 450 0 0 0 chr9 75957516 75957566 -48118606 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 7 1164 1872 278 70 66 chr9 75957701 75959146 -48117026 + Lx8 LINE L1 5263 6766 -707 7 1164 350 273 17 6 chr9 75959152 75959329 -48116843 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 7 1164 1287 319 26 33 chr9 75959341 75959918 -48116254 + Lx8 LINE L1 6923 7495 -149 7 1164 3291 48 0 5 chr9 75960015 75960430 -48115742 + L1Md_F2 LINE L1 6166 6578 -4 7 1164 1947 181 64 30 chr9 75961035 75961428 -48114744 + MTD LTR MaLR 14 419 0 7 1164 480 72 0 0 chr9 75961664 75961733 -48114439 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 1164 418 178 97 16 chr9 75962111 75962242 -48113930 + MTD LTR MaLR 275 414 -5 7 1164 378 0 0 0 chr9 75962946 75962988 -48113184 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1164 21 95 0 0 chr9 75964313 75964376 -48111796 + AT_rich Low_complexity Low_complexity 1 63 0 7 1164 534 31 0 0 chr9 75964456 75964520 -48111652 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1164 640 0 25 0 chr9 75964932 75965012 -48111160 + (CA)n Simple_repeat Simple_repeat 2 83 0 7 1164 591 216 134 17 chr9 75965132 75965283 -48110889 + B3A SINE B2 2 156 -39 7 1164 483 18 0 0 chr9 75965291 75965347 -48110825 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1164 3677 55 7 0 chr9 75965531 75965990 -48110182 + L1_Mus3 LINE L1 6161 6622 -16 7 1164 378 0 0 0 chr9 75965990 75966032 -48110140 + (TAA)n Simple_repeat Simple_repeat 1 42 0 7 1164 333 0 0 0 chr9 75966789 75966826 -48109346 + (TTA)n Simple_repeat Simple_repeat 3 39 0 7 1164 425 155 54 60 chr9 75966826 75967011 -48109161 - RMER17C LTR ERVK -139 271 88 7 1164 235 186 68 10 chr9 75967583 75967686 -48108486 + (TA)n Simple_repeat Simple_repeat 2 110 0 7 1164 185 339 9 18 chr9 75968207 75968318 -48107854 + MIRb SINE MIR 66 175 -93 7 1164 42 48 0 0 chr9 75968435 75968498 -48107674 + AT_rich Low_complexity Low_complexity 1 63 0 7 1164 278 257 14 0 chr9 75968862 75968932 -48107240 + MER117 DNA MER1_type 71 141 -56 7 1164 378 245 58 99 chr9 75969041 75969068 -48107104 - B2_Mm2 SINE B2 -24 171 146 7 1164 357 24 0 0 chr9 75969068 75969110 -48107062 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1164 544 245 58 99 chr9 75969110 75969254 -48106918 - B3A SINE B2 -49 149 7 7 1164 404 96 7 188 chr9 75969337 75969491 -48106681 - RMER17B LTR ERVK -521 437 312 7 1164 3406 62 7 7 chr9 75970417 75970870 -48105302 - L1Md_F2 LINE L1 0 6582 6130 7 1164 753 41 0 0 chr9 75970997 75971094 -48105078 + (CA)n Simple_repeat Simple_repeat 2 98 0 7 1164 459 0 0 0 chr9 75971442 75971493 -48104679 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 7 1164 514 298 121 26 chr9 75971773 75972152 -48104020 - L1MA7 LINE L1 -172 6128 5714 7 1164 840 279 161 12 chr9 75972188 75972511 -48103661 - MTEb LTR MaLR -8 371 1 7 1164 5807 75 10 2 chr9 75972561 75973349 -48102823 - L1_Mus3 LINE L1 -7 6631 5838 7 1164 405 272 151 6 chr9 75973493 75973652 -48102520 - B3A SINE B2 -16 182 1 7 1164 627 267 10 35 chr9 75973659 75973861 -48102311 - B3A SINE B2 0 198 2 7 1164 442 287 76 15 chr9 75973896 75974027 -48102145 - RSINE1 SINE B4 -25 140 2 7 1164 614 239 52 0 chr9 75974062 75974196 -48101976 - B1_Mur1 SINE Alu -7 142 2 7 1164 263 247 136 0 chr9 75974716 75974797 -48101375 + ID_B1 SINE B4 130 221 -3 7 1164 3710 191 35 10 chr9 75975180 75975900 -48100272 + RMER1B Other Other 8 1065 -1 7 1164 210 71 0 0 chr9 75976030 75976058 -48100114 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1164 182 304 22 0 chr9 75979248 75979294 -48096878 + L2c LINE L2 3331 3377 -10 7 1164 901 288 10 0 chr9 75982694 75982899 -48093273 + B3 SINE B2 2 208 -8 7 1164 247 287 96 0 chr9 75984869 75984963 -48091209 - MLT1L LTR MaLR -362 248 146 7 1164 2201 182 68 7 chr9 75986611 75987036 -48089136 - RMER1B Other Other -3 1063 613 7 1164 615 100 33 0 chr9 75987079 75987169 -48089003 - L1_Mur2 LINE L1 -670 5207 5115 7 1164 513 213 46 29 chr9 75987163 75987337 -48088835 + Lx4B LINE L1 6880 7056 -2 7 1164 411 100 0 0 chr9 75988231 75988301 -48087871 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1164 32 57 0 0 chr9 75988320 75988373 -48087799 + AT_rich Low_complexity Low_complexity 1 53 0 7 1164 848 102 62 0 chr9 75988469 75988597 -48087575 + B2_Mm2 SINE B2 2 137 -58 7 1164 333 0 0 0 chr9 75988608 75988645 -48087527 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1164 219 69 0 0 chr9 75988652 75988681 -48087491 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 1164 240 254 113 0 chr9 75988744 75988815 -48087357 + ID4 SINE ID 5 83 0 7 1164 195 184 0 0 chr9 75990188 75990226 -48085946 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 1164 261 209 0 0 chr9 75990360 75990427 -48085745 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 7 1164 2033 314 91 86 chr9 75990830 75992116 -48084056 + L1_Rod LINE L1 2534 3672 -2468 7 1164 270 136 0 0 chr9 75992116 75992160 -48084012 + (CGA)n Simple_repeat Simple_repeat 3 46 0 7 1164 2033 330 93 47 chr9 75992160 75992575 -48083597 + L1_Rod LINE L1 3653 4121 -1765 7 1164 668 12 12 0 chr9 75992575 75992656 -48083516 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 1164 2033 330 93 47 chr9 75992656 75992749 -48083423 + L1_Rod LINE L1 4122 4224 -1662 7 1164 1040 88 0 14 chr9 75992749 75992888 -48083284 + B1_Mus1 SINE Alu 2 138 -10 7 1164 3696 293 71 44 chr9 75992888 75992967 -48083205 + L1_Rod LINE L1 4311 4358 -1489 7 1164 212 0 36 0 chr9 75992967 75992995 -48083177 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 7 1164 3696 266 55 41 chr9 75992995 75993647 -48082525 + L1_Rod LINE L1 4359 5012 -835 7 1164 390 257 151 103 chr9 75993647 75993998 -48082174 + RLTR9A LTR ERVK 1 368 0 7 1164 3696 266 55 41 chr9 75993998 75994710 -48081462 + L1_Rod LINE L1 5013 5740 -107 7 1164 2469 253 53 35 chr9 75994717 75995430 -48080742 + Lx9 LINE L1 6447 7172 -472 7 1164 239 341 94 8 chr9 75995607 75995734 -48080438 + MIRb SINE MIR 35 172 -96 7 1164 1082 116 0 4 chr9 75995773 75996009 -48080163 + (GAAA)n Simple_repeat Simple_repeat 1 234 0 7 1164 217 235 0 19 chr9 75996026 75996078 -48080094 + MIR SINE MIR 211 261 -1 7 1164 1017 235 228 30 chr9 75996427 75996781 -48079391 - MTD LTR MaLR -14 405 6 7 1164 897 321 52 13 chr9 75996977 75997001 -48079171 - RMER15 LTR ERVL -9 566 543 7 1164 423 0 0 0 chr9 75997001 75997048 -48079124 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1164 897 321 52 13 chr9 75997048 75997332 -48078840 - RMER15 LTR ERVL -33 542 247 7 1164 593 246 95 11 chr9 75997821 75998010 -48078162 - B3 SINE B2 -11 205 1 7 1164 857 231 80 0 chr9 76001622 76001821 -48074351 + B3 SINE B2 2 216 0 1 1164 353 322 73 20 chr9 76002380 76002605 -48073567 + MIRc SINE MIR 2 251 -11 2 1164 2863 74 0 5 chr9 76003864 76004259 -48071913 - L1_Mus4 LINE L1 -458 6178 5786 3 1164 3804 83 2 2 chr9 76004259 76004769 -48071403 + L1_Mus4 LINE L1 6121 6630 -6 3 1164 405 346 49 0 chr9 76005471 76005633 -48070539 + MER5A DNA MER1_type 18 187 -2 4 1164 1269 264 112 38 chr9 76005750 76006284 -48069888 + L1MA6 LINE L1 5099 5683 -617 5 1164 225 0 0 0 chr9 76006284 76006309 -48069863 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1164 1269 287 55 50 chr9 76006309 76006745 -48069427 + L1MA6 LINE L1 5684 6109 -191 5 1164 21 0 0 0 chr9 76006804 76006825 -48069347 + AT_rich Low_complexity Low_complexity 1 21 0 7 1164 278 333 130 0 chr9 76007731 76007839 -48068333 + MLT1L LTR MaLR 440 561 -49 8 1164 7504 118 24 21 chr9 76008139 76009344 -48066828 + Lx3C LINE L1 5749 6962 -14 9 1164 234 0 0 0 chr9 76009344 76009370 -48066802 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1164 7504 118 24 21 chr9 76009370 76009384 -48066788 + Lx3C LINE L1 6963 6971 -5 9 1164 213 39 0 0 chr9 76009478 76009504 -48066668 + (CATA)n Simple_repeat Simple_repeat 2 27 0 1 1164 665 305 69 20 chr9 76009523 76009727 -48066445 - B3 SINE B2 -1 215 2 1 1164 1314 267 107 31 chr9 76010480 76010959 -48065213 + RLTR20B1 LTR ERVK 49 563 0 1 1164 207 0 0 0 chr9 76011177 76011200 -48064972 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1164 21 71 0 0 chr9 76012065 76012107 -48064065 + AT_rich Low_complexity Low_complexity 1 42 0 1 1164 242 306 0 100 chr9 76013261 76013341 -48062831 + ID4 SINE ID 12 83 0 1 1164 189 0 0 0 chr9 76013623 76013644 -48062528 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1164 1609 166 67 12 chr9 76014972 76015386 -48060786 - RMER17C LTR ERVK -519 439 16 1 1164 1354 191 87 6 chr9 76015389 76015736 -48060436 + Lx9 LINE L1 7269 7643 -1 1 1164 24 53 0 0 chr9 76015904 76015942 -48060230 + AT_rich Low_complexity Low_complexity 1 38 0 2 1164 200 214 0 18 chr9 76016742 76016799 -48059373 + CT-rich Low_complexity Low_complexity 3 58 0 2 1164 1487 273 31 18 chr9 76017523 76017978 -48058194 + RMER1B Other Other 19 479 -587 2 1164 25 31 0 0 chr9 76018330 76018362 -48057810 + AT_rich Low_complexity Low_complexity 1 32 0 2 1164 209 384 72 50 chr9 76018400 76018622 -48057550 + MIRb SINE MIR 13 239 -29 2 1164 471 18 0 0 chr9 76018707 76018763 -48057409 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1164 216 0 0 0 chr9 76019326 76019350 -48056822 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1164 284 209 0 11 chr9 76019682 76019774 -48056398 + (CCAA)n Simple_repeat Simple_repeat 1 91 0 2 145 2549 94 8 24 chr9 76021648 76022027 -48054145 + Lx LINE L1 6279 6651 -3 2 1165 530 98 12 0 chr9 76022040 76022122 -48054050 + (GAAAA)n Simple_repeat Simple_repeat 2 84 0 2 1165 420 296 45 76 chr9 76022497 76022720 -48053452 + Lx8 LINE L1 7257 7472 -1 3 1165 320 205 43 35 chr9 76022894 76023010 -48053162 - Lx9 LINE L1 -11 7633 7517 3 1165 1327 244 93 14 chr9 76023013 76023358 -48052814 - MTD LTR MaLR 0 419 48 3 1165 296 243 14 0 chr9 76023368 76023438 -48052734 + L1_Rod LINE L1 2388 2458 -3389 3 1165 1456 279 51 38 chr9 76023444 76024126 -48052046 + L1_Rod LINE L1 2606 3296 -2551 3 1165 1292 233 139 136 chr9 76024150 76025092 -48051080 + RMER17B LTR ERVK 1 886 -72 3 1165 643 297 53 12 chr9 76025115 76025456 -48050716 + L1M2 LINE L1 3370 3724 -2419 3 1165 189 0 0 0 chr9 76025456 76025477 -48050695 + (CG)n Simple_repeat Simple_repeat 1 21 0 3 1165 504 48 0 0 chr9 76025481 76025544 -48050628 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1165 1679 208 78 8 chr9 76025560 76025952 -48050220 - MTD LTR MaLR -14 405 1 3 1165 894 99 0 0 chr9 76026489 76026620 -48049552 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 3 1165 453 19 0 0 chr9 76027292 76027346 -48048826 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1165 185 231 26 0 chr9 76028901 76028940 -48047232 + MER5B DNA MER1_type 1 40 -138 4 1165 2103 100 37 12 chr9 76030072 76030396 -48045776 + Lx LINE L1 6160 6491 -163 4 1165 800 59 0 0 chr9 76030396 76030497 -48045675 - B1_Mus1 SINE Alu -47 101 1 4 1165 893 248 42 17 chr9 76030497 76030696 -48045476 - MTD LTR MaLR -214 205 1 4 1165 36747 40 1 3 chr9 76030866 76037319 -48038853 - L1Md_T LINE L1 0 6585 50 4 1165 565 326 110 97 chr9 76038179 76038652 -48037520 + MLT1J1-int LTR MaLR 465 943 -444 4 1165 216 0 0 0 chr9 76038967 76038991 -48037181 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1165 237 312 84 55 chr9 76039034 76039281 -48036891 + MLT1J1 LTR MaLR 2 255 -189 4 1165 198 71 0 0 chr9 76039589 76039617 -48036555 + (CAAAC)n Simple_repeat Simple_repeat 1 28 0 4 1165 600 328 104 73 chr9 76040197 76040621 -48035551 + MLT1H2 LTR MaLR 49 485 -4 4 1165 558 71 0 0 chr9 76040728 76040812 -48035360 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1165 216 163 0 0 chr9 76040892 76040935 -48035237 + T-rich Low_complexity Low_complexity 1 43 0 5 1165 2026 149 84 13 chr9 76043658 76044038 -48032134 + MTB_Mm LTR MaLR 1 407 0 5 1165 511 293 0 0 chr9 76044235 76044351 -48031821 + PB1D10 SINE Alu 2 117 0 5 1165 347 281 0 53 chr9 76044403 76044497 -48031675 + RSINE1 SINE B4 27 115 -50 5 1165 354 45 0 0 chr9 76044509 76044553 -48031619 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1165 5653 78 6 13 chr9 76045734 76046511 -48029661 + Lx3_Mus LINE L1 6238 7009 0 5 1165 211 263 0 50 chr9 76047057 76047129 -48029043 + GA-rich Low_complexity Low_complexity 3 70 0 5 1165 1090 76 6 6 chr9 76047129 76047288 -48028884 + (GGAA)n Simple_repeat Simple_repeat 3 161 0 5 1165 339 268 111 30 chr9 76049252 76049487 -48026685 + L1M5 LINE L1 2804 3057 -3089 5 1165 808 345 62 16 chr9 76049489 76050052 -48026120 + Lx8 LINE L1 6791 7379 -94 6 1165 1492 265 57 22 chr9 76050127 76050240 -48025932 + MTD LTR MaLR 2 108 -311 6 1165 2540 144 13 16 chr9 76050240 76050692 -48025480 - RLTR11B LTR ERVK -2 451 1 6 1165 1492 265 57 22 chr9 76050692 76050980 -48025192 + MTD LTR MaLR 109 417 -2 6 1165 3500 227 50 72 chr9 76050983 76052021 -48024151 + MTD-int LTR MaLR 2 1016 -242 6 1165 974 296 65 18 chr9 76052101 76052483 -48023689 - Lx8 LINE L1 -151 7322 6923 6 1165 198 0 0 0 chr9 76052548 76052570 -48023602 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1165 478 259 36 127 chr9 76053581 76053802 -48022370 + Lx9 LINE L1 6993 7193 -451 6 1165 24 77 0 0 chr9 76054089 76054141 -48022031 + AT_rich Low_complexity Low_complexity 1 52 0 6 1165 21 57 0 0 chr9 76054187 76054222 -48021950 + AT_rich Low_complexity Low_complexity 1 35 0 6 1165 5055 58 1 76 chr9 76054504 76055293 -48020879 + L1_Mur1 LINE L1 5148 5877 -9 6 1165 551 65 0 0 chr9 76055295 76055372 -48020800 + Lx3_Mus LINE L1 6397 6473 -536 6 1165 215 227 27 96 chr9 76056319 76056392 -48019780 + L2 LINE L2 538 605 -2814 7 1165 985 130 0 0 chr9 76056707 76056845 -48019327 + B1_Mus1 SINE Alu 3 140 -8 7 1165 631 287 21 0 chr9 76056994 76057182 -48018990 - B3A SINE B2 -5 193 2 7 1165 405 0 0 0 chr9 76057355 76057400 -48018772 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1165 390 182 0 0 chr9 76057400 76057510 -48018662 + GA-rich Low_complexity Low_complexity 1 110 0 7 1165 187 369 69 0 chr9 76057551 76057711 -48018461 + L2 LINE L2 2245 2415 -1004 7 1165 893 242 10 34 chr9 76058942 76059151 -48017021 - B3 SINE B2 -7 209 6 7 1165 1092 228 212 127 chr9 76062931 76063026 -48013146 - MT2B LTR ERVL -2 599 545 7 1165 183 80 0 0 chr9 76063026 76063051 -48013121 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 7 1165 1092 228 212 127 chr9 76063051 76063507 -48012665 - MT2B LTR ERVL -57 544 1 7 1165 346 343 0 19 chr9 76063975 76064079 -48012093 + RSINE1 SINE B4 17 118 -47 7 1165 3999 77 90 20 chr9 76064079 76064715 -48011457 - Lx3_Mus LINE L1 -332 6677 5998 8 1165 462 252 122 0 chr9 76064724 76064847 -48011325 + B3 SINE B2 3 140 -76 8 1165 441 0 0 0 chr9 76064875 76064924 -48011248 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1165 916 305 92 52 chr9 76065426 76065803 -48010369 - MTD LTR MaLR 0 419 22 8 1165 888 208 5 54 chr9 76065830 76066033 -48010139 + B3A SINE B2 5 197 -1 8 1165 721 323 117 32 chr9 76066426 76066768 -48009404 - MTE2a LTR MaLR -8 371 1 8 1165 504 287 146 40 chr9 76068146 76068592 -48007580 + L1_Mur3 LINE L1 2255 2747 -3133 8 1165 1023 46 13 7 chr9 76068829 76068981 -48007191 - L1Md_F3 LINE L1 0 6584 6432 8 1165 352 354 72 29 chr9 76069033 76069626 -48006546 + L1M2 LINE L1 2971 3589 -2554 8 1165 792 304 33 35 chr9 76069887 76070286 -48005886 + L1M2 LINE L1 3587 3984 -2159 8 1165 269 203 102 25 chr9 76070289 76070370 -48005802 + L1M2 LINE L1 4835 4937 -1206 8 1165 283 344 31 0 chr9 76070390 76070518 -48005654 + L1M2 LINE L1 4006 4137 -2006 8 1165 386 38 0 19 chr9 76070543 76070596 -48005576 + (TA)n Simple_repeat Simple_repeat 1 52 0 9 1165 414 0 0 0 chr9 76070596 76070642 -48005530 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 9 1165 251 276 82 13 chr9 76070642 76070800 -48005372 + L1_Mur3 LINE L1 4135 4303 -1577 8 1165 270 203 0 15 chr9 76070952 76071017 -48005155 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 9 1165 2128 191 135 16 chr9 76071044 76071194 -48004978 + RMER4B LTR ERVK 18 176 -409 9 1165 441 0 0 0 chr9 76071194 76071243 -48004929 + (TC)n Simple_repeat Simple_repeat 2 50 0 9 1165 2128 191 135 16 chr9 76071243 76071493 -48004679 + RMER4B LTR ERVK 177 459 -126 9 1165 594 41 0 0 chr9 76071493 76071566 -48004606 + (TC)n Simple_repeat Simple_repeat 2 74 0 9 1165 2128 191 135 16 chr9 76071566 76071668 -48004504 + RMER4B LTR ERVK 460 579 -6 9 1165 23 0 0 0 chr9 76071691 76071714 -48004458 + AT_rich Low_complexity Low_complexity 1 23 0 9 1165 731 133 24 96 chr9 76071740 76071906 -48004266 + Lx3A LINE L1 6826 6979 -2 9 1165 741 324 129 4 chr9 76072003 76072483 -48003689 + L1M2 LINE L1 4546 5085 -1058 9 1165 1116 62 0 0 chr9 76072483 76072628 -48003544 + (TTC)n Simple_repeat Simple_repeat 3 147 0 9 1165 572 14 0 0 chr9 76072635 76072704 -48003468 - B1_Mur4 SINE Alu -6 144 76 1 1165 344 268 76 42 chr9 76072719 76072863 -48003309 + L1M2 LINE L1 5125 5273 -870 9 1165 497 300 76 24 chr9 76072942 76073232 -48002940 + L1M2 LINE L1 5287 5591 -256 9 1165 522 165 0 9 chr9 76073690 76073800 -48002372 - Lx LINE L1 -13 6641 6533 1 1165 28 0 0 0 chr9 76074501 76074529 -48001643 + AT_rich Low_complexity Low_complexity 1 28 0 1 1165 282 349 0 9 chr9 76076077 76076184 -47999988 - MER5A DNA MER1_type 0 189 84 1 1165 237 272 0 24 chr9 76076280 76076363 -47999809 + CT-rich Low_complexity Low_complexity 1 81 0 1 1165 22 35 0 0 chr9 76077866 76077895 -47998277 + AT_rich Low_complexity Low_complexity 1 29 0 1 1165 21 36 0 0 chr9 76077982 76078010 -47998162 + AT_rich Low_complexity Low_complexity 1 28 0 1 1165 33 56 0 0 chr9 76079687 76079741 -47996431 + AT_rich Low_complexity Low_complexity 1 54 0 1 1165 3259 45 0 0 chr9 76080163 76080561 -47995611 - L1_Mus2 LINE L1 -1 6565 6168 1 1165 474 241 116 41 chr9 76081138 76081285 -47994887 - B3 SINE B2 0 216 59 1 1165 3736 191 62 12 chr9 76081286 76081911 -47994261 + Lx5 LINE L1 6254 6898 -152 1 1165 420 20 0 0 chr9 76081911 76081960 -47994212 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1165 3736 191 62 12 chr9 76081960 76082091 -47994081 + Lx5 LINE L1 6899 7048 -2 1 1165 285 200 0 43 chr9 76082557 76082651 -47993521 + GA-rich Low_complexity Low_complexity 1 90 0 1 1165 380 200 188 23 chr9 76082731 76082859 -47993313 - Lx5 LINE L1 0 7050 6902 1 1165 618 268 13 13 chr9 76085469 76085620 -47990552 - B3 SINE B2 -3 213 63 1 1165 538 281 130 72 chr9 76086349 76086625 -47989547 - B4 SINE B4 0 292 1 1 1165 968 279 27 70 chr9 76086906 76087461 -47988711 + L1M2 LINE L1 4464 4994 -1149 1 1165 459 0 0 0 chr9 76087512 76087563 -47988609 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1165 477 263 132 22 chr9 76087564 76087700 -47988472 - B3A SINE B2 -36 162 12 1 1165 728 337 27 15 chr9 76087743 76088155 -47988017 + L1_Mur3 LINE L1 5020 5436 -444 1 1165 966 271 31 71 chr9 76088156 76088212 -47987960 - MTD LTR MaLR 0 419 365 1 1165 198 0 0 0 chr9 76088212 76088234 -47987938 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1165 966 271 31 71 chr9 76088234 76088499 -47987673 - MTD LTR MaLR -55 364 111 1 1165 336 258 0 0 chr9 76088518 76088584 -47987588 - B4 SINE B4 -222 70 5 1 1165 22 0 0 0 chr9 76088767 76088789 -47987383 + AT_rich Low_complexity Low_complexity 1 22 0 1 1165 800 200 0 14 chr9 76089078 76089225 -47986947 - B1_Mus1 SINE Alu -2 146 2 1 1165 195 302 43 65 chr9 76089464 76089556 -47986616 + L2a LINE L2 3336 3425 -1 1 1165 1861 127 65 3 chr9 76089566 76089859 -47986313 + RLTR10E LTR ERVK 1 311 0 1 1165 325 228 74 25 chr9 76091192 76091273 -47984899 + MLT1H-int LTR MaLR 15 99 -1310 1 1165 1376 262 97 22 chr9 76091719 76092171 -47984001 + Lx8 LINE L1 6172 6657 -816 1 1165 285 318 11 0 chr9 76092177 76092265 -47983907 - Lx8 LINE L1 -706 6767 6679 1 1165 771 272 71 68 chr9 76092359 76092741 -47983431 + Lx8 LINE L1 7091 7473 0 1 1165 1169 55 7 0 chr9 76093098 76093244 -47982928 + B1_Mus1 SINE Alu 2 148 0 1 1165 879 227 21 42 chr9 76093699 76093892 -47982280 + B3 SINE B2 1 189 -27 1 1165 21 57 0 0 chr9 76094579 76094614 -47981558 + AT_rich Low_complexity Low_complexity 1 35 0 1 1165 1760 228 42 6 chr9 76094937 76095295 -47980877 + ORR1C2 LTR MaLR 2 372 -12 1 1165 183 220 0 0 chr9 76095742 76095792 -47980380 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1165 405 39 0 0 chr9 76095802 76095853 -47980319 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1165 800 274 39 5 chr9 76096415 76096620 -47979552 + ID_B1 SINE B4 3 214 -10 1 1165 340 207 0 33 chr9 76096623 76096713 -47979459 + HAL1-2a_MD LINE L1 2383 2469 -555 1 1165 342 0 0 0 chr9 76096779 76096817 -47979355 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 1 1165 198 0 0 0 chr9 76097193 76097215 -47978957 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1165 350 296 7 81 chr9 76097352 76097488 -47978684 + B1F SINE Alu 2 127 -22 1 1165 297 246 27 14 chr9 76097488 76097562 -47978610 + B1F SINE Alu 70 144 -5 1 1165 194 0 0 37 chr9 76098313 76098340 -47977832 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1165 1977 196 47 3 chr9 76098340 76098723 -47977449 + MTD LTR MaLR 18 417 -2 1 1165 1959 116 9 51 chr9 76099162 76099498 -47976674 + RLTRETN_Mm LTR ERVK 1 322 0 1 1165 279 0 0 0 chr9 76099647 76099678 -47976494 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 1 1165 291 263 35 116 chr9 76100209 76100381 -47975791 + RLTR9B LTR ERVK 280 437 0 1 1165 21 36 0 0 chr9 76100874 76100902 -47975270 + AT_rich Low_complexity Low_complexity 1 28 0 1 1165 221 354 0 35 chr9 76100928 76101013 -47975159 - PB1D10 SINE Alu 0 117 36 1 1165 746 288 147 26 chr9 76101523 76101950 -47974222 - Lx7 LINE L1 -1672 5972 5542 1 1165 396 0 0 0 chr9 76104219 76104263 -47971909 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1165 1628 36 0 0 chr9 76104976 76105168 -47971004 + B2_Mm1a SINE B2 2 193 0 1 1165 275 45 45 0 chr9 76106221 76106265 -47969907 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1165 180 0 0 0 chr9 76106350 76106370 -47969802 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1 1165 1155 58 0 0 chr9 76106371 76106510 -47969662 - B1_Mm SINE Alu -8 139 1 1 1165 24 32 0 0 chr9 76106771 76106802 -47969370 + AT_rich Low_complexity Low_complexity 1 31 0 1 1165 196 341 76 23 chr9 76106940 76107072 -47969100 - MIR SINE MIR -76 186 48 1 1165 231 264 18 36 chr9 76107986 76108041 -47968131 + PB1D9 SINE Alu 6 59 -61 1 1165 284 0 0 160 chr9 76108042 76108186 -47967986 + (CAGAG)n Simple_repeat Simple_repeat 5 125 0 1 1165 530 236 18 28 chr9 76108189 76108298 -47967874 + B1_Mur1 SINE Alu 42 149 0 1 1165 2010 123 50 3 chr9 76109142 76109485 -47966687 + RLTR15 LTR ERVK 1 359 0 1 1165 592 55 44 0 chr9 76109583 76109674 -47966498 + (CATA)n Simple_repeat Simple_repeat 2 96 0 1 1165 635 319 38 19 chr9 76110293 76110558 -47965614 - MLT1C LTR MaLR -132 335 66 1 1165 989 207 24 15 chr9 76110564 76110770 -47965402 + B3 SINE B2 5 212 -4 1 1165 249 327 103 32 chr9 76110879 76111034 -47965138 - L3 LINE CR1 -313 4176 4011 1 1165 1356 235 129 9 chr9 76111116 76111580 -47964592 + Lx7 LINE L1 6783 7302 -394 1 1165 348 24 0 0 chr9 76111604 76111645 -47964527 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1165 402 85 0 0 chr9 76111645 76111704 -47964468 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1165 448 266 18 164 chr9 76111729 76111785 -47964387 - MTEa LTR MaLR -233 146 95 1 1165 2160 66 7 7 chr9 76111785 76112076 -47964096 + L1_Mus3 LINE L1 6339 6629 -9 1 1165 448 266 18 164 chr9 76112076 76112190 -47963982 - MTEa LTR MaLR -285 94 1 1 1165 2936 271 100 26 chr9 76112930 76114955 -47961217 - Lx9 LINE L1 -4 7640 5287 1 1165 475 203 107 40 chr9 76114970 76115119 -47961053 - RMER6A LTR ERVK -182 574 416 1 1165 452 85 329 0 chr9 76115117 76115199 -47960973 - RMER6A LTR ERVK -647 109 1 1 1165 794 233 166 11 chr9 76115211 76115489 -47960683 - Lx9 LINE L1 -3339 2508 2188 1 1165 409 294 82 11 chr9 76115501 76115683 -47960489 - L1_Rod LINE L1 -6663 509 315 1 1165 1926 132 21 68 chr9 76116631 76116971 -47959201 + ORR1A3 LTR MaLR 3 326 0 1 1165 295 250 100 0 chr9 76117007 76117087 -47959085 + PB1D10 SINE Alu 30 117 0 1 1165 981 300 71 31 chr9 76117275 76117909 -47958263 - L1MA6 LINE L1 -20 6280 5622 1 1165 258 264 14 0 chr9 76118190 76118262 -47957910 + Lx9 LINE L1 7359 7431 -213 1 1165 383 209 16 0 chr9 76118262 76118391 -47957781 + (CATA)n Simple_repeat Simple_repeat 3 133 0 1 1165 230 226 189 0 chr9 76118391 76118497 -47957675 + Lx9 LINE L1 7481 7606 -38 1 1165 1782 70 0 0 chr9 76119089 76119319 -47956853 + RLTR13B1 LTR ERVK 664 893 0 1 1165 2443 54 26 0 chr9 76119320 76119633 -47956539 + L1Md_F2 LINE L1 5266 5586 -297 1 1165 7811 49 13 2 chr9 76119633 76120606 -47955566 + L1Md_F2 LINE L1 5587 6570 -12 1 1165 379 325 69 60 chr9 76122569 76122934 -47953238 + L1MEg LINE L1 1161 1616 -4799 1 1165 308 380 44 36 chr9 76123298 76123683 -47952489 - L1ME3A LINE L1 -47 6126 5739 1 1165 333 0 0 0 chr9 76123691 76123728 -47952444 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1165 1011 138 0 31 chr9 76124316 76124331 -47951841 - Lx3A LINE L1 0 6981 6967 1 1165 342 0 0 0 chr9 76124331 76124369 -47951803 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1165 1011 138 0 31 chr9 76124369 76124548 -47951624 - Lx3A LINE L1 -15 6966 6793 1 1165 1196 115 50 0 chr9 76126224 76126406 -47949766 + B2_Mm2 SINE B2 2 192 -3 1 1165 3085 200 77 54 chr9 76126931 76127708 -47948464 + RLTR40 LTR ERVK 7 801 -16 1 1165 5593 79 17 0 chr9 76127952 76128698 -47947474 - Lx3_Mus LINE L1 -4 7005 6247 1 1165 1474 96 5 0 chr9 76128698 76128916 -47947256 + Lx3_Mus LINE L1 6029 6247 -762 1 1165 548 299 98 8 chr9 76129300 76129536 -47946636 + Lx9 LINE L1 6292 6548 -1096 1 1165 2202 83 89 0 chr9 76129659 76129985 -47946187 + IAPEY2_LTR LTR ERVK 1 355 -2 1 1165 1558 183 56 47 chr9 76129987 76130308 -47945864 - ORR1B1 LTR MaLR -32 362 39 1 1165 2345 284 95 51 chr9 76130312 76131351 -47944821 + Lx9 LINE L1 6545 7629 -15 1 1165 27 29 0 0 chr9 76131504 76131538 -47944634 + AT_rich Low_complexity Low_complexity 1 34 0 1 1165 206 227 33 33 chr9 76131764 76131855 -47944317 + (TATAA)n Simple_repeat Simple_repeat 2 92 0 1 1165 261 303 11 0 chr9 76131956 76132045 -47944127 + Lx9 LINE L1 7264 7353 -291 1 1165 505 213 52 17 chr9 76132062 76132234 -47943938 - L1MA7 LINE L1 -319 5972 5795 1 1165 387 89 0 0 chr9 76132234 76132290 -47943882 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1165 270 0 0 0 chr9 76133675 76133705 -47942467 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1165 25 51 0 0 chr9 76134401 76134440 -47941732 + AT_rich Low_complexity Low_complexity 1 39 0 1 1165 1591 138 206 3 chr9 76134855 76135171 -47941001 + RLTR14 LTR ERV1 1 380 -2 1 1165 21 71 0 0 chr9 76135333 76135375 -47940797 + AT_rich Low_complexity Low_complexity 1 42 0 2 1165 588 50 0 0 chr9 76135407 76135487 -47940685 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1165 4707 103 28 3 chr9 76135565 76136273 -47939899 - Lx3B LINE L1 -3 6970 6245 2 1165 846 82 33 0 chr9 76136421 76136543 -47939629 + B2_Mm2 SINE B2 2 127 -68 2 1165 1633 246 43 15 chr9 76136581 76136977 -47939195 - MTD LTR MaLR -12 407 1 2 1165 438 189 44 18 chr9 76136989 76137102 -47939070 - MTD-int LTR MaLR -57 1201 1086 2 1165 709 82 0 0 chr9 76137104 76137202 -47938970 - L1_Mus3 LINE L1 -221 6417 6320 2 1165 2225 229 157 42 chr9 76137202 76137968 -47938204 - MTD-int LTR MaLR -399 859 6 2 1165 1410 208 129 0 chr9 76137974 76138345 -47937827 - MTD LTR MaLR 0 419 1 2 1165 189 189 27 0 chr9 76138474 76138511 -47937661 + L2 LINE L2 2397 2434 -985 2 1165 481 64 13 13 chr9 76138591 76138670 -47937502 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 2 1165 281 382 53 84 chr9 76138855 76139235 -47936937 - LTR16C LTR ERVL -4 485 118 2 1165 735 232 92 0 chr9 76139281 76139466 -47936706 + B3 SINE B2 1 202 -14 2 1165 1305 244 78 27 chr9 76140209 76140411 -47935761 + MTD LTR MaLR 2 203 -216 2 1165 5559 47 0 0 chr9 76140411 76141089 -47935083 + L1Md_F2 LINE L1 5904 6581 -1 2 1165 1305 244 78 27 chr9 76141089 76141114 -47935058 + MTD LTR MaLR 204 224 -195 2 1165 735 12 0 0 chr9 76141114 76141198 -47934974 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 2 1165 1305 244 78 27 chr9 76141198 76141340 -47934832 + MTD LTR MaLR 225 390 -29 2 1165 402 269 10 181 chr9 76141330 76141534 -47934638 + MTD LTR MaLR 251 419 0 2 1165 567 241 0 9 chr9 76141698 76141811 -47934361 + B1_Mur2 SINE Alu 3 114 -35 2 1165 523 192 28 19 chr9 76141798 76141904 -47934268 + B1_Mur2 SINE Alu 43 149 0 2 1165 1614 255 65 89 chr9 76143256 76143884 -47932288 + Lx9 LINE L1 6581 7193 -451 2 1165 251 54 27 0 chr9 76144490 76144527 -47931645 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2 1165 762 274 0 0 chr9 76144538 76144684 -47931488 - B1_Mur1 SINE Alu -1 148 3 2 1165 624 342 65 42 chr9 76145361 76145764 -47930408 + Tigger7 DNA MER2_type 39 450 -2041 2 1165 231 213 0 21 chr9 76145779 76145827 -47930345 + CT-rich Low_complexity Low_complexity 3 49 0 2 1165 501 17 0 0 chr9 76145927 76145985 -47930187 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1165 1409 299 35 24 chr9 76146360 76146822 -47929350 + RMER15 LTR ERVL 107 573 -2 2 1165 495 87 0 0 chr9 76147171 76147240 -47928932 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1165 189 226 54 54 chr9 76147674 76147730 -47928442 - MIRm SINE MIR -93 183 128 2 1165 4980 232 25 65 chr9 76150014 76151045 -47925127 + L1_Mur3 LINE L1 4275 5294 -586 2 1165 752 183 49 7 chr9 76151045 76151188 -47924984 + B1_Mur4 SINE Alu 1 149 -1 2 1165 4980 232 25 65 chr9 76151188 76151642 -47924530 + L1_Mur3 LINE L1 5295 5700 -180 2 1165 1404 303 27 15 chr9 76151638 76152158 -47924014 + Lx7 LINE L1 6771 7296 -400 2 1165 339 65 0 0 chr9 76152163 76152209 -47923963 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 145 651 317 57 49 chr9 76152465 76153274 -47922898 + L1M2 LINE L1 2279 3093 -3050 2 1166 622 279 20 20 chr9 76153275 76153425 -47922747 + RSINE1 SINE B4 16 165 0 2 1166 242 263 80 112 chr9 76153425 76153463 -47922709 + B3A SINE B2 15 196 -2 2 1166 707 260 94 64 chr9 76153468 76153797 -47922375 + L1_Mur3 LINE L1 5353 5691 -189 2 1166 919 257 95 87 chr9 76153817 76154187 -47921985 - MTE2a LTR MaLR -6 373 1 2 1166 2972 290 65 17 chr9 76154226 76155279 -47920893 + Lx8 LINE L1 6302 7404 -69 2 1166 231 204 0 0 chr9 76155619 76155668 -47920504 + CT-rich Low_complexity Low_complexity 3 51 0 2 1166 440 183 4 220 chr9 76156033 76156206 -47919966 - L1_Mur3 LINE L1 -3455 2425 2278 2 1166 200 337 0 148 chr9 76156608 76156723 -47919449 + L2c LINE L2 3285 3382 -5 2 1166 2199 90 0 26 chr9 76157036 76157344 -47918828 + L1_Mus1 LINE L1 5984 6283 -284 2 1166 24 0 0 0 chr9 76157735 76157759 -47918413 + AT_rich Low_complexity Low_complexity 1 24 0 2 1166 202 139 0 27 chr9 76157883 76157920 -47918252 + T-rich Low_complexity Low_complexity 3 38 0 2 1166 1120 98 6 6 chr9 76157966 76158140 -47918032 + (TTTC)n Simple_repeat Simple_repeat 4 177 0 2 1166 521 184 0 9 chr9 76158149 76158259 -47917913 + CT-rich Low_complexity Low_complexity 3 111 0 2 1166 396 59 0 0 chr9 76158889 76158940 -47917232 + (CATA)n Simple_repeat Simple_repeat 2 52 0 2 1166 526 302 101 32 chr9 76159004 76159281 -47916891 - Lx8 LINE L1 0 7473 7178 2 1166 422 277 50 14 chr9 76159303 76159442 -47916730 - Lx8 LINE L1 -928 6545 6402 2 1166 323 272 12 24 chr9 76159608 76159691 -47916481 - RSINE1 SINE B4 0 165 84 2 1166 1688 157 105 6 chr9 76160110 76160319 -47915853 + ORR1B2 LTR MaLR 1 242 -125 2 1166 189 0 0 0 chr9 76160319 76160340 -47915832 + (CCTG)n Simple_repeat Simple_repeat 2 22 0 2 1166 1688 157 105 6 chr9 76160340 76160464 -47915708 + ORR1B2 LTR MaLR 243 366 -1 2 1166 23 0 0 0 chr9 76160931 76160954 -47915218 + AT_rich Low_complexity Low_complexity 1 23 0 2 1166 387 344 86 35 chr9 76160989 76161245 -47914927 - MLT1F1 LTR MaLR -19 550 282 2 1166 543 335 11 29 chr9 76161519 76161694 -47914478 + B3A SINE B2 5 176 -22 2 1166 414 0 0 0 chr9 76161710 76161756 -47914416 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1166 1798 185 24 47 chr9 76161832 76161857 -47914315 + ORR1D1 LTR MaLR 3 27 -347 2 1166 1839 138 27 51 chr9 76161857 76162192 -47913980 + ORR1A2 LTR MaLR 1 327 0 2 1166 8423 143 132 71 chr9 76162192 76162543 -47913629 + ORR1A2-int LTR MaLR 1 313 -1650 2 1166 1135 82 0 0 chr9 76162543 76162690 -47913482 - B1_Mus2 SINE Alu 0 147 1 2 1166 8423 143 132 71 chr9 76162690 76164189 -47911983 + ORR1A2-int LTR MaLR 314 1963 0 2 1166 1566 150 62 100 chr9 76164189 76164529 -47911643 + ORR1A2 LTR MaLR 1 327 0 2 1166 1798 185 24 47 chr9 76164529 76164882 -47911290 + ORR1D1 LTR MaLR 28 372 -2 2 1166 3336 35 2 2 chr9 76164982 76165378 -47910794 + MTA_Mm LTR MaLR 1 396 0 2 1166 199 236 94 73 chr9 76168308 76168404 -47907768 + L3 LINE CR1 2501 2598 -1891 2 1166 258 32 0 0 chr9 76169229 76169260 -47906912 + (TTG)n Simple_repeat Simple_repeat 1 31 0 2 1166 231 140 0 0 chr9 76170461 76170511 -47905661 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 2 1166 22 0 0 0 chr9 76171962 76171984 -47904188 + AT_rich Low_complexity Low_complexity 1 22 0 2 1166 1135 318 77 60 chr9 76172141 76172856 -47903316 + Lx8 LINE L1 6741 7467 -6 2 1166 214 339 24 24 chr9 76172905 76173029 -47903143 - L3 LINE CR1 -811 3678 3555 2 1166 297 169 0 0 chr9 76174018 76174101 -47902071 + T-rich Low_complexity Low_complexity 1 83 0 2 1166 1173 55 0 0 chr9 76174116 76174262 -47901910 - B1_Mm SINE Alu -1 146 1 2 1166 1890 132 93 69 chr9 76174408 76174872 -47901300 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1166 567 200 97 0 chr9 76175406 76175551 -47900621 - L1MA6 LINE L1 -6 6294 6136 2 1166 6172 186 87 14 chr9 76175531 76176641 -47899531 + Lx5 LINE L1 5637 6820 -230 2 1166 450 0 0 0 chr9 76176641 76176691 -47899481 + (CCTG)n Simple_repeat Simple_repeat 1 50 0 2 1166 6172 186 87 14 chr9 76176691 76176896 -47899276 + Lx5 LINE L1 6821 7047 -3 2 1166 235 333 98 0 chr9 76177038 76177140 -47899032 - L1MA6 LINE L1 -251 6049 5938 2 1166 309 26 0 0 chr9 76177631 76177669 -47898503 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1166 351 0 0 0 chr9 76177804 76177843 -47898329 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1166 2568 284 66 19 chr9 76177928 76178762 -47897410 - Lx8 LINE L1 -191 7282 6410 2 1166 1466 150 139 4 chr9 76179249 76179530 -47896642 + ORR1D1 LTR MaLR 52 370 -4 2 1166 217 300 114 35 chr9 76179565 76179679 -47896493 - MIRc SINE MIR -137 131 9 2 1166 1153 68 0 0 chr9 76179706 76179852 -47896320 - B1_Mus2 SINE Alu 0 147 2 2 1166 29 28 0 0 chr9 76179985 76180021 -47896151 + AT_rich Low_complexity Low_complexity 1 36 0 2 1166 736 222 128 0 chr9 76180023 76180203 -47895969 - B3 SINE B2 -11 205 3 2 1166 596 311 30 5 chr9 76180623 76180820 -47895352 - B4A SINE B4 -88 204 3 2 1166 686 234 55 0 chr9 76180865 76181010 -47895162 + B3 SINE B2 7 159 -57 2 1166 1297 276 101 38 chr9 76181146 76181937 -47894235 - L1M4 LINE L1 -1034 5112 4228 2 1166 273 109 0 0 chr9 76181937 76181983 -47894189 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1166 555 16 0 0 chr9 76181983 76182046 -47894126 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1166 697 292 166 46 chr9 76182046 76182575 -47893597 - L1M4 LINE L1 -1913 4227 3627 2 1166 190 225 0 0 chr9 76183022 76183062 -47893110 - MIR SINE MIR -50 212 173 2 1166 430 247 145 28 chr9 76183838 76184178 -47891994 - L1M2 LINE L1 -1505 4638 4263 2 1166 878 286 39 8 chr9 76184219 76184473 -47891699 - Lx8 LINE L1 -589 6884 6623 2 1166 21 0 0 0 chr9 76184731 76184752 -47891420 + AT_rich Low_complexity Low_complexity 1 21 0 2 1166 373 312 19 0 chr9 76186261 76186421 -47889751 + (TA)n Simple_repeat Simple_repeat 1 163 0 2 1166 295 219 31 15 chr9 76186524 76186589 -47889583 - ID4_ SINE ID -6 77 12 2 1166 257 244 39 0 chr9 76186602 76186680 -47889492 - RMER1C Other Other -2 1340 1260 2 1166 1677 284 80 11 chr9 76186625 76187238 -47888934 - Lx8 LINE L1 -5 7468 6814 2 1166 182 284 172 54 chr9 76187704 76187797 -47888375 + MIR SINE MIR 148 251 -11 2 1166 270 311 159 0 chr9 76188110 76188261 -47887911 + MER5B DNA MER1_type 4 178 0 2 1166 364 369 7 7 chr9 76188285 76188435 -47887737 + MER5A1 DNA MER1_type 17 166 0 2 1166 1628 314 58 37 chr9 76188963 76189698 -47886474 + Lx8 LINE L1 6722 7472 -1 2 1166 882 95 0 0 chr9 76190751 76190877 -47885295 + (GAAA)n Simple_repeat Simple_repeat 2 127 0 2 1166 1445 241 115 13 chr9 76190947 76191380 -47884792 + RMER15 LTR ERVL 9 487 -88 2 1166 1626 230 70 0 chr9 76191380 76191750 -47884422 + MTD LTR MaLR 1 396 -23 2 1166 630 222 7 53 chr9 76192092 76192244 -47883928 - B1_Mur1 SINE Alu 0 149 5 2 1166 797 208 133 0 chr9 76192565 76192738 -47883434 + B3 SINE B2 15 210 -6 2 1166 798 252 74 41 chr9 76193075 76193319 -47882853 - B4 SINE B4 0 292 41 2 1166 3127 66 14 19 chr9 76193888 76194306 -47881866 + L1_Mus2 LINE L1 6151 6566 0 3 1166 208 346 53 23 chr9 76194908 76195041 -47881131 - MIRc SINE MIR -32 236 100 3 1166 270 164 0 0 chr9 76195521 76195576 -47880596 + (CAT)n Simple_repeat Simple_repeat 3 57 0 3 1166 2914 189 87 49 chr9 76195591 76196285 -47879887 - Lx9 LINE L1 -25 7619 6900 3 1166 196 333 25 0 chr9 76196448 76196529 -47879643 + L2a LINE L2 3339 3421 -5 3 1166 23 0 0 0 chr9 76196919 76196942 -47879230 + AT_rich Low_complexity Low_complexity 1 23 0 3 1166 2246 231 40 62 chr9 76196950 76197593 -47878579 + Lx7 LINE L1 7068 7696 0 3 1166 221 0 35 0 chr9 76197688 76197717 -47878455 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1166 1256 344 62 84 chr9 76197853 76198682 -47877490 + RMER15-int LTR ERVL 1011 1820 -3179 3 1166 586 354 46 14 chr9 76198726 76199007 -47877165 + RMER15-int LTR ERVL 1784 2073 -2926 3 1166 1671 189 33 52 chr9 76199098 76199461 -47876711 - MTD LTR MaLR -63 356 1 3 1166 411 216 108 30 chr9 76200450 76200617 -47875555 + L1MA9 LINE L1 6113 6292 -20 3 1166 24 67 0 0 chr9 76201397 76201442 -47874730 + AT_rich Low_complexity Low_complexity 1 45 0 3 1166 320 197 0 43 chr9 76201720 76201789 -47874383 - HAL1-3A_ME LINE L1 -829 2029 1964 3 1166 21 0 0 0 chr9 76202733 76202754 -47873418 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 5222 174 38 25 chr9 76203050 76204109 -47872063 + Lx3C LINE L1 5901 6972 -4 3 1166 35 0 0 0 chr9 76204111 76204146 -47872026 + AT_rich Low_complexity Low_complexity 1 35 0 3 1166 1168 77 0 13 chr9 76204157 76204316 -47871856 + B2_Mm2 SINE B2 2 158 -37 3 1166 342 0 0 0 chr9 76204316 76204354 -47871818 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 1166 492 254 9 0 chr9 76204917 76205027 -47871145 - B1_Mur1 SINE Alu -34 115 5 3 1166 225 0 0 0 chr9 76205779 76205804 -47870368 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1166 211 333 0 12 chr9 76206751 76206833 -47869339 + CT-rich Low_complexity Low_complexity 3 83 0 3 1166 217 369 0 0 chr9 76207129 76207194 -47868978 - ID4_ SINE ID -11 72 8 3 1166 252 0 0 0 chr9 76207210 76207238 -47868934 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1166 180 0 0 0 chr9 76207239 76207259 -47868913 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1166 21 57 0 0 chr9 76208181 76208216 -47867956 + AT_rich Low_complexity Low_complexity 1 35 0 3 1166 325 268 115 9 chr9 76210179 76210292 -47865880 + PB1 SINE Alu 1 125 -2 3 1166 255 61 0 0 chr9 76210399 76210432 -47865740 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 3 1166 889 223 61 0 chr9 76212237 76212434 -47863738 + B3 SINE B2 1 209 -7 3 1166 24 0 0 0 chr9 76212434 76212458 -47863714 + AT_rich Low_complexity Low_complexity 1 24 0 3 1166 331 323 42 16 chr9 76212468 76212660 -47863512 + Lx9 LINE L1 7339 7535 -109 3 1166 522 347 73 0 chr9 76213041 76213191 -47862981 - RSINE1 SINE B4 -2 163 3 3 1166 812 173 0 6 chr9 76213640 76213820 -47862352 + GA-rich Low_complexity Low_complexity 1 179 0 3 1166 752 338 53 18 chr9 76213850 76214248 -47861924 - Lx8 LINE L1 -216 7257 6846 3 1166 335 183 12 0 chr9 76215056 76215138 -47861034 + CT-rich Low_complexity Low_complexity 1 83 0 3 1166 3003 164 88 42 chr9 76215230 76216107 -47860065 - RLTR13D3 LTR ERVK 0 1114 1 3 1166 180 0 0 0 chr9 76217627 76217647 -47858525 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1166 488 204 28 28 chr9 76217910 76218016 -47858156 + B3A SINE B2 16 121 -77 3 1166 315 0 0 0 chr9 76218443 76218478 -47857694 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1166 322 253 0 39 chr9 76218955 76219033 -47857139 + RMER17A2 LTR ERVK 819 893 -13 3 1166 274 296 161 19 chr9 76219036 76219191 -47856981 + Lx8 LINE L1 7269 7445 -28 3 1166 673 286 25 25 chr9 76219248 76219406 -47856766 + B3A SINE B2 2 159 -39 3 1166 282 56 0 0 chr9 76219406 76219442 -47856730 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1166 206 231 19 0 chr9 76219442 76219494 -47856678 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1166 1611 42 0 0 chr9 76219680 76219873 -47856299 + B2_Mm1t SINE B2 1 193 0 3 1166 24 0 0 0 chr9 76219909 76219933 -47856239 + AT_rich Low_complexity Low_complexity 1 24 0 3 1166 192 77 0 0 chr9 76220566 76220592 -47855580 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1166 5034 86 6 1 chr9 76220944 76221663 -47854509 - L1_Mm LINE L1 -3612 2271 1552 3 1166 1598 71 5 0 chr9 76221663 76221874 -47854298 + L1_Mus1 LINE L1 6356 6567 0 3 1166 5034 86 6 1 chr9 76221874 76221885 -47854287 - L1_Mm LINE L1 -4332 1551 1539 3 1166 243 217 171 14 chr9 76223410 76223480 -47852692 - MLT1B LTR MaLR -290 100 20 3 1166 1323 243 90 3 chr9 76224549 76224892 -47851280 - MTEb LTR MaLR -2 377 5 3 1166 286 295 0 0 chr9 76225752 76225830 -47850342 + MLT1C LTR MaLR 390 467 0 3 1166 396 118 0 13 chr9 76225898 76225975 -47850197 + RMER17C LTR ERVK 335 410 0 3 1166 542 327 128 23 chr9 76227021 76227593 -47848579 - L1MC1 LINE L1 -93 6240 5621 3 1166 351 259 216 0 chr9 76227633 76227749 -47848423 - MTEa LTR MaLR -42 337 197 3 1166 5156 247 45 70 chr9 76228679 76230585 -47845587 - L1_Rod LINE L1 -1424 4423 2565 3 1166 395 251 122 30 chr9 76230610 76230807 -47845365 - L1MCa LINE L1 -4985 1523 1309 3 1166 189 0 0 0 chr9 76230807 76230828 -47845344 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 1166 312 277 125 0 chr9 76230947 76231059 -47845113 - L1MCa LINE L1 -5395 1113 988 3 1166 216 0 0 0 chr9 76231877 76231901 -47844271 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 1166 845 329 103 21 chr9 76232149 76232780 -47843392 + L1_Mur3 LINE L1 1644 2326 -3554 3 1166 1959 262 49 61 chr9 76232785 76233544 -47842628 + RLTR40 LTR ERVK 29 778 -39 3 1166 3433 255 36 115 chr9 76233583 76234745 -47841427 + L1_Mur3 LINE L1 2323 3468 -2412 3 1166 2020 187 97 14 chr9 76234745 76235229 -47840943 + RLTR11A2 LTR ERVK 4 527 0 3 1166 3433 255 36 115 chr9 76235229 76236003 -47840169 + L1_Mur3 LINE L1 3469 4106 -1774 3 1166 624 264 55 15 chr9 76236154 76236354 -47839818 - Lx8 LINE L1 -510 6963 6756 3 1166 1076 82 7 20 chr9 76237205 76237354 -47838818 - B1_Mus1 SINE Alu 0 148 2 3 1166 203 208 0 19 chr9 76237627 76237681 -47838491 + (TATAA)n Simple_repeat Simple_repeat 4 56 0 3 1166 185 350 102 42 chr9 76238221 76238388 -47837784 + L2a LINE L2 2992 3168 -258 3 1166 371 338 30 8 chr9 76238492 76238626 -47837546 - B1F SINE Alu -5 144 8 3 1166 877 288 115 39 chr9 76239105 76240260 -47835912 + L1M2 LINE L1 4484 5771 -541 3 1166 264 269 117 22 chr9 76241882 76242019 -47834153 - Lx5 LINE L1 -3 7047 6898 3 1166 1878 175 3 20 chr9 76242001 76242184 -47833988 - Lx5 LINE L1 -945 6105 5924 3 1166 2911 101 0 12 chr9 76242184 76242596 -47833576 + MTB_Mm LTR MaLR 1 407 0 3 1166 1878 175 3 20 chr9 76242596 76242761 -47833411 - Lx5 LINE L1 -1127 5923 5763 3 1166 9633 142 4 15 chr9 76242758 76244330 -47831842 + Lx5 LINE L1 4206 5760 -117 3 1166 230 29 59 0 chr9 76245127 76245161 -47831011 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1166 203 320 0 0 chr9 76245732 76245782 -47830390 + L2a LINE L2 3376 3425 -1 3 1166 617 302 75 20 chr9 76247046 76247379 -47828793 + MLT1B LTR MaLR 1 387 -3 3 1166 247 78 39 0 chr9 76248017 76248068 -47828104 + (CAAA)n Simple_repeat Simple_repeat 3 55 0 3 1166 228 67 0 0 chr9 76248202 76248232 -47827940 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1166 593 339 0 42 chr9 76248258 76248449 -47827723 - B3A SINE B2 -15 183 1 3 1166 922 313 151 8 chr9 76248666 76249017 -47827155 + Lx8 LINE L1 6929 7329 -144 3 1166 399 319 0 12 chr9 76249055 76249220 -47826952 + Lx9 LINE L1 7323 7485 -159 3 1166 249 83 0 0 chr9 76249220 76249256 -47826916 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 1166 287 221 101 25 chr9 76249384 76249463 -47826709 - RLTR31_Mm LTR ERVK 0 561 477 3 1166 4830 131 47 17 chr9 76249435 76250308 -47825864 - RLTR13D6 LTR ERVK -56 846 1 3 1166 2957 160 23 10 chr9 76250308 76250815 -47825357 - RLTR31_Mm LTR ERVK -47 514 1 3 1166 650 270 15 0 chr9 76252192 76252329 -47823843 + B1_Mur2 SINE Alu 1 139 -10 3 1166 719 92 0 9 chr9 76252330 76252440 -47823732 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 3 1166 277 316 68 84 chr9 76253003 76253296 -47822876 - B4 SINE B4 0 292 14 3 1166 1332 279 19 0 chr9 76253673 76254039 -47822133 + MTE2b LTR MaLR 3 375 -4 3 1166 224 250 0 27 chr9 76254042 76254116 -47822056 + GA-rich Low_complexity Low_complexity 3 74 0 3 1166 28 0 0 0 chr9 76254395 76254423 -47821749 + AT_rich Low_complexity Low_complexity 1 28 0 3 1166 605 283 101 70 chr9 76255471 76255957 -47820215 - L1MA8 LINE L1 -5 6286 5786 3 1166 422 191 63 57 chr9 76256054 76256234 -47819938 - L1MA8 LINE L1 -780 5523 5335 3 1166 2186 311 72 10 chr9 76256563 76257685 -47818487 - L1_Mur3 LINE L1 -14 5866 4675 3 1166 917 331 31 6 chr9 76257683 76258039 -47818133 - Lx8 LINE L1 -499 6974 6610 3 1166 317 224 0 0 chr9 76258039 76258106 -47818066 + RLTR21 LTR ERVK 1 67 -1505 3 1166 55 113 0 0 chr9 76258140 76258405 -47817767 + AT_rich Low_complexity Low_complexity 1 265 0 3 1166 264 289 0 0 chr9 76258973 76259063 -47817109 + SRV_MM-int LTR ERVK 3482 3571 -2596 3 1166 2370 178 32 5 chr9 76259530 76259936 -47816236 - RMER19C LTR ERVK 0 611 195 3 1166 614 135 89 9 chr9 76259957 76260069 -47816103 - RLTR22_Mur LTR ERVK -605 1243 1123 3 1166 658 204 56 39 chr9 76260066 76260096 -47816076 - RLTR22_Mur LTR ERVK -1666 182 153 3 1166 579 15 0 0 chr9 76260096 76260164 -47816008 + (GAA)n Simple_repeat Simple_repeat 2 69 0 3 1166 658 204 56 39 chr9 76260164 76260312 -47815860 - RLTR22_Mur LTR ERVK -1696 152 1 3 1166 316 158 0 34 chr9 76260325 76260384 -47815788 + RMER19C LTR ERVK 85 141 -470 3 1166 1512 216 153 12 chr9 76260379 76260791 -47815381 + RLTR22_Mur LTR ERVK 1198 1667 -181 3 1166 1514 155 211 17 chr9 76260814 76261169 -47815003 - Lx3C LINE L1 -2 6974 6551 3 1166 460 286 129 8 chr9 76261234 76261474 -47814698 - Lx9 LINE L1 -1617 6027 5759 3 1166 30 45 0 0 chr9 76261474 76261518 -47814654 + AT_rich Low_complexity Low_complexity 1 44 0 3 1166 216 0 0 0 chr9 76261548 76261572 -47814600 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1166 512 308 54 25 chr9 76261619 76261859 -47814313 - L1_Mur3 LINE L1 -134 5746 5500 4 1166 284 264 216 21 chr9 76262127 76262409 -47813763 - L1M2c LINE L1 -1994 4788 4452 4 1166 21 57 0 0 chr9 76262432 76262467 -47813705 + AT_rich Low_complexity Low_complexity 1 35 0 4 1166 332 307 136 33 chr9 76262664 76263298 -47812874 - L1M2c LINE L1 -2559 4226 3528 4 1166 22 0 0 0 chr9 76263375 76263397 -47812775 + AT_rich Low_complexity Low_complexity 1 22 0 4 1166 242 314 87 0 chr9 76263466 76263651 -47812521 - L1M2c LINE L1 -4815 1974 1774 4 1166 1159 288 32 11 chr9 76263876 76264286 -47811886 + L1_Mur1 LINE L1 5340 5781 -519 4 1166 418 331 11 11 chr9 76264326 76264509 -47811663 + L1M3 LINE L1 3909 4091 -2049 4 1166 468 51 0 0 chr9 76264514 76264573 -47811599 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1166 633 290 109 0 chr9 76264591 76264774 -47811398 + B3 SINE B2 9 211 -5 4 1166 2165 305 42 68 chr9 76264787 76264907 -47811265 + Lx9 LINE L1 4242 4358 -1522 4 1166 350 275 0 0 chr9 76264907 76264987 -47811185 + ID4_ SINE ID 1 80 -3 4 1166 2165 306 44 66 chr9 76264987 76266450 -47809722 + Lx9 LINE L1 4359 5804 -1840 4 1166 21 0 0 0 chr9 76267799 76267820 -47808352 + AT_rich Low_complexity Low_complexity 1 21 0 4 1166 739 246 13 100 chr9 76269819 76270049 -47806123 - Lx5 LINE L1 0 7050 6841 4 1166 2576 96 3 27 chr9 76270546 76270920 -47805252 - RLTR8 LTR ERVK 0 365 1 4 1166 180 0 0 0 chr9 76271159 76271179 -47804993 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1166 239 272 76 82 chr9 76271294 76271478 -47804694 + L1MEc LINE L1 76 258 -6142 4 1166 871 284 63 68 chr9 76271989 76272371 -47803801 + MLT1B LTR MaLR 11 390 0 4 1166 3328 101 33 7 chr9 76272421 76272912 -47803260 - RLTR1C LTR ERV1 0 587 1 4 1166 7703 88 37 34 chr9 76272912 76275069 -47801103 - MMVL30-int LTR ERV1 0 3698 1496 4 1166 459 0 0 0 chr9 76275224 76275275 -47800897 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1166 596 145 54 130 chr9 76275371 76275655 -47800517 - MMVL30-int LTR ERV1 -2187 1511 960 4 1166 4863 104 1 3 chr9 76275742 76276425 -47799747 - MMVL30-int LTR ERV1 -2245 1453 772 4 1166 430 281 12 42 chr9 76276894 76277061 -47799111 - MMVL30-int LTR ERV1 -7023 533 372 4 1166 1569 152 34 7 chr9 76277079 76277371 -47798801 - MMVL30-int LTR ERV1 -7256 300 1 4 1166 3500 97 0 8 chr9 76277388 76277879 -47798293 - RLTR1C LTR ERV1 -16 487 1 4 1166 4648 111 43 43 chr9 76278251 76279014 -47797158 + Lx2A1 LINE L1 6245 7007 -1 4 1166 367 272 0 11 chr9 76279217 76279310 -47796862 + MLT1A1 LTR MaLR 317 408 0 4 1166 525 16 0 0 chr9 76280735 76280797 -47795375 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4 1166 201 147 0 0 chr9 76280797 76280831 -47795341 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 4 1166 21 57 0 0 chr9 76281260 76281295 -47794877 + AT_rich Low_complexity Low_complexity 1 35 0 4 1166 266 378 42 31 chr9 76281402 76281593 -47794579 - L2 LINE L2 -588 2831 2639 4 1166 300 290 70 79 chr9 76283255 76283461 -47792711 + MLT1A LTR MaLR 182 378 -12 4 1166 468 0 0 0 chr9 76283695 76283747 -47792425 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1167 246 254 45 0 chr9 76284037 76284104 -47792068 - ID4_ SINE ID -11 72 3 4 1167 297 305 38 9 chr9 76284152 76284258 -47791914 - PB1D10 SINE Alu -8 109 1 4 1167 661 243 73 12 chr9 76285342 76285527 -47790645 + B3 SINE B2 8 189 -6 4 1167 642 193 12 6 chr9 76285698 76285865 -47790307 + (TA)n Simple_repeat Simple_repeat 1 168 0 4 1167 199 106 42 21 chr9 76287228 76287276 -47788896 + A-rich Low_complexity Low_complexity 1 49 0 4 1167 259 231 19 0 chr9 76287521 76287573 -47788599 - MLT1J1 LTR MaLR -330 114 62 4 1167 582 15 0 0 chr9 76287609 76287676 -47788496 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 4 1167 3671 38 10 87 chr9 76288080 76288595 -47787577 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1167 436 268 0 3 chr9 76288889 76289031 -47787141 - L1M2 LINE L1 -888 5255 5078 4 1167 304 286 32 7 chr9 76289044 76289199 -47786973 + L1MA4A LINE L1 5770 5928 -375 4 1167 362 221 0 19 chr9 76289220 76289326 -47786846 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 4 1167 439 270 9 0 chr9 76289630 76289741 -47786431 - RSINE1 SINE B4 -38 127 16 4 1167 304 263 52 21 chr9 76290964 76291061 -47785111 - L1MC1 LINE L1 -277 6056 5957 4 1167 1917 121 11 113 chr9 76292097 76292338 -47783834 - ORR1A4 LTR MaLR -3 326 102 4 1167 3388 170 178 62 chr9 76292338 76292841 -47783331 - RMER13B LTR ERVK -3 905 400 4 1167 1249 47 0 0 chr9 76292841 76292989 -47783183 - B1_Mus1 SINE Alu 0 148 1 4 1167 3388 170 178 62 chr9 76292989 76293296 -47782876 - RMER13B LTR ERVK -509 399 1 4 1167 1917 121 11 113 chr9 76293296 76293417 -47782755 - ORR1A4 LTR MaLR -228 101 1 4 1167 205 274 0 21 chr9 76293714 76293811 -47782361 + (TA)n Simple_repeat Simple_repeat 2 96 0 4 1167 371 238 8 60 chr9 76294051 76294184 -47781988 - PB1D7 SINE Alu -26 123 5 4 1167 3633 26 28 2 chr9 76294279 76294704 -47781468 + RLTR10C LTR ERVK 1 436 0 4 1167 3067 61 15 12 chr9 76294822 76295221 -47780951 + MTB LTR MaLR 1 400 0 4 1167 464 282 37 105 chr9 76295558 76295712 -47780460 + B4 SINE B4 1 138 -154 4 1167 189 0 0 0 chr9 76295712 76295733 -47780439 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 4 1167 464 282 37 105 chr9 76295733 76295768 -47780404 + B4 SINE B4 139 177 -115 4 1167 342 0 0 0 chr9 76295832 76295870 -47780302 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1167 21 71 0 0 chr9 76297101 76297143 -47779029 + AT_rich Low_complexity Low_complexity 1 42 0 4 1167 849 110 0 0 chr9 76297548 76297675 -47778497 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 4 1167 267 54 0 0 chr9 76297937 76297974 -47778198 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1167 907 280 9 18 chr9 76298227 76298445 -47777727 + B3 SINE B2 1 216 0 4 1167 3384 52 28 5 chr9 76298804 76299230 -47776942 + RLTR10C LTR ERVK 1 436 0 4 1167 954 72 72 0 chr9 76299417 76299555 -47776617 - B1_Mus1 SINE Alu 0 148 1 4 1167 186 118 0 0 chr9 76299562 76299596 -47776576 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1167 23 0 0 0 chr9 76299850 76299873 -47776299 + AT_rich Low_complexity Low_complexity 1 23 0 4 1167 315 303 46 0 chr9 76300057 76300166 -47776006 - MER82 DNA MER2_type -302 351 238 4 1167 1623 148 14 194 chr9 76300827 76301312 -47774860 + RMER10B LTR ERVL 1 398 0 4 1167 1097 43 0 0 chr9 76302208 76302346 -47773826 - B1_Mus2 SINE Alu -1 146 9 4 1167 21 0 0 0 chr9 76302543 76302564 -47773608 + AT_rich Low_complexity Low_complexity 1 21 0 4 1167 459 179 82 40 chr9 76303143 76303255 -47772917 - B1_Mur3 SINE Alu 0 120 5 4 1167 218 360 94 23 chr9 76303147 76303275 -47772897 - B4 SINE B4 -86 206 70 4 1167 2271 100 92 77 chr9 76304361 76304762 -47771410 - MTB_Mm LTR MaLR 0 407 1 4 1167 521 221 7 7 chr9 76305336 76305629 -47770543 + (CA)n Simple_repeat Simple_repeat 1 293 0 4 1167 500 209 98 53 chr9 76305633 76305785 -47770387 - ORR1D1 LTR MaLR -134 244 78 4 1167 710 229 63 32 chr9 76305703 76305927 -47770245 + ORR1D2 LTR MaLR 121 367 -3 4 1167 484 328 51 0 chr9 76306746 76307002 -47769170 - Lx9 LINE L1 -144 7500 7232 4 1167 1809 252 19 109 chr9 76306994 76308076 -47768096 - L1_Rod LINE L1 -805 5335 4287 4 1167 24 0 0 0 chr9 76308384 76308408 -47767764 + AT_rich Low_complexity Low_complexity 1 24 0 4 1167 254 293 94 109 chr9 76308518 76308975 -47767197 + L1MA6 LINE L1 2153 2639 -3504 4 1167 1209 68 0 0 chr9 76308975 76309123 -47767049 + B1_Mus1 SINE Alu 1 148 0 4 1167 254 293 94 109 chr9 76309123 76309431 -47766741 + L1MA6 LINE L1 2640 2876 -3267 4 1167 829 233 38 19 chr9 76309431 76309641 -47766531 + B3 SINE B2 2 215 -1 4 1167 254 293 94 109 chr9 76309641 76309975 -47766197 + L1MA6 LINE L1 2877 3236 -2907 4 1167 889 227 5 50 chr9 76309978 76310196 -47765976 + B3 SINE B2 4 211 -5 4 1167 437 298 85 25 chr9 76310208 76310490 -47765682 + L1MA6 LINE L1 4518 4816 -1324 4 1167 378 0 0 0 chr9 76310501 76310543 -47765629 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1167 644 309 10 0 chr9 76310564 76310768 -47765404 + Lx8 LINE L1 6205 6410 -1063 4 1167 979 221 159 7 chr9 76310772 76311072 -47765100 + ORR1D1 LTR MaLR 27 370 0 4 1167 377 237 9 3 chr9 76311077 76311186 -47764986 + Lx8 LINE L1 6419 6529 -944 4 1167 679 286 44 78 chr9 76311240 76311951 -47764221 + L1MA6 LINE L1 4912 5601 -690 4 1167 599 336 26 6 chr9 76312047 76312394 -47763778 + L1MA6 LINE L1 5598 5951 -349 4 1167 993 277 96 72 chr9 76314260 76314637 -47761535 + MTD LTR MaLR 19 404 -15 4 1167 203 311 11 32 chr9 76316823 76316852 -47759320 + polypurine Low_complexity Low_complexity 1 28 0 4 1167 630 39 0 0 chr9 76316852 76316929 -47759243 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 4 1167 203 311 11 32 chr9 76316929 76316992 -47759180 + polypurine Low_complexity Low_complexity 29 91 0 4 1167 412 45 45 0 chr9 76316996 76317062 -47759110 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 4 1167 1046 68 96 0 chr9 76317819 76317965 -47758207 + B2_Mm2 SINE B2 1 160 -35 4 1167 195 42 0 0 chr9 76317967 76317991 -47758181 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 1167 837 166 12 0 chr9 76318444 76318692 -47757480 + (TCTCTG)n Simple_repeat Simple_repeat 1 251 0 4 1167 252 172 0 0 chr9 76319277 76319335 -47756837 + CT-rich Low_complexity Low_complexity 1 58 0 4 1167 1299 37 0 6 chr9 76320653 76320817 -47755355 - L1_Mus1 LINE L1 0 6567 6405 4 1167 29 0 0 0 chr9 76321192 76321221 -47754951 + AT_rich Low_complexity Low_complexity 1 29 0 4 1167 441 0 0 0 chr9 76321278 76321327 -47754845 + (TAA)n Simple_repeat Simple_repeat 2 50 0 4 1167 691 139 13 26 chr9 76324927 76325082 -47751090 + CT-rich Low_complexity Low_complexity 4 156 0 4 1167 454 19 0 0 chr9 76325082 76325134 -47751038 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1167 511 186 140 88 chr9 76325136 76325272 -47750900 - B1F2 SINE Alu -5 144 2 4 1167 1569 51 0 0 chr9 76326243 76326439 -47749733 + L1Md_T LINE L1 6385 6580 -2 4 1167 231 36 0 0 chr9 76326445 76326473 -47749699 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1167 447 328 7 76 chr9 76327193 76327338 -47748834 + MER5A DNA MER1_type 40 174 -15 4 1167 630 39 0 0 chr9 76327838 76327915 -47748257 + (GA)n Simple_repeat Simple_repeat 1 77 0 4 1167 929 215 43 14 chr9 76329720 76329928 -47746244 + B3 SINE B2 2 215 -1 4 1167 198 0 0 0 chr9 76331111 76331133 -47745039 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1167 23 33 0 0 chr9 76331495 76331525 -47744647 + AT_rich Low_complexity Low_complexity 1 30 0 5 1167 239 0 32 0 chr9 76332120 76332151 -47744021 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 5 1167 1424 244 38 0 chr9 76332159 76332474 -47743698 - Lx6 LINE L1 -227 7233 6907 5 1167 693 106 0 0 chr9 76332482 76332586 -47743586 + (TCCC)n Simple_repeat Simple_repeat 4 107 0 5 1167 279 0 0 0 chr9 76332611 76332642 -47743530 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1167 512 168 44 9 chr9 76332642 76332756 -47743416 - Lx7 LINE L1 -791 6905 6788 5 1167 2142 241 42 50 chr9 76332755 76333402 -47742770 + Lx6 LINE L1 5907 6548 -912 5 1167 4477 49 2 0 chr9 76333677 76334228 -47741944 - L1Md_F2 LINE L1 -2 6580 6029 5 1167 518 368 23 27 chr9 76334870 76335127 -47741045 - B4A SINE B4 -4 288 33 5 1167 24 67 0 0 chr9 76341715 76341760 -47734412 + AT_rich Low_complexity Low_complexity 1 45 0 5 1167 28 0 0 0 chr9 76342105 76342133 -47734039 + AT_rich Low_complexity Low_complexity 1 28 0 5 1167 483 69 0 0 chr9 76342288 76342360 -47733812 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1167 314 276 78 39 chr9 76343384 76343486 -47732686 - PB1D10 SINE Alu -9 108 3 5 1167 290 328 35 26 chr9 76343978 76344094 -47732078 + PB1D7 SINE Alu 4 120 0 5 1167 304 271 123 25 chr9 76344256 76344491 -47731681 + L1M3 LINE L1 2164 2421 -3719 5 1167 272 283 93 0 chr9 76344730 76344884 -47731288 + L1M3 LINE L1 2675 2844 -3302 5 1167 191 36 0 35 chr9 76345162 76345191 -47730981 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1167 480 35 0 0 chr9 76345330 76345388 -47730784 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1167 223 214 179 0 chr9 76346999 76347055 -47729117 + B3A SINE B2 8 73 -125 5 1167 1314 158 138 17 chr9 76347055 76347284 -47728888 + Lx9 LINE L1 7240 7495 -149 5 1167 393 75 0 0 chr9 76347284 76347337 -47728835 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1167 1314 158 138 17 chr9 76347337 76347468 -47728704 + Lx9 LINE L1 7496 7643 -1 5 1167 369 0 0 0 chr9 76347645 76347686 -47728486 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1167 207 69 0 0 chr9 76347686 76347714 -47728458 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1167 1041 145 0 0 chr9 76348251 76348430 -47727742 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 5 1167 501 369 19 0 chr9 76349058 76349218 -47726954 - RSINE1 SINE B4 0 165 3 5 1167 372 303 16 128 chr9 76349229 76349354 -47726818 - B1F1 SINE Alu -9 140 1 5 1167 477 292 52 6 chr9 76349637 76349809 -47726363 - B3A SINE B2 -18 180 1 5 1167 1114 69 0 20 chr9 76350208 76350355 -47725817 + B1_Mus1 SINE Alu 5 148 0 5 1167 1583 198 41 22 chr9 76353107 76353474 -47722698 - ORR1D1 LTR MaLR 0 374 1 5 1167 354 263 56 5 chr9 76355294 76355478 -47720694 + L1MA6 LINE L1 5108 5315 -831 5 1167 5861 138 68 11 chr9 76355480 76355657 -47720515 - RLTR25A LTR ERVK 0 1103 884 5 1167 495 0 0 0 chr9 76355657 76355712 -47720460 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1167 5861 138 68 11 chr9 76355712 76356571 -47719601 - RLTR25A LTR ERVK -220 883 9 5 1167 855 145 6 98 chr9 76356709 76356892 -47719280 + B2_Mm2 SINE B2 4 169 -26 5 1167 732 269 9 5 chr9 76356896 76357120 -47719052 + L1MA6 LINE L1 5384 5608 -683 5 1167 207 0 0 0 chr9 76357590 76357613 -47718559 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1167 276 287 92 27 chr9 76358261 76358522 -47717650 + L1_Mur3 LINE L1 1240 1517 -4363 5 1167 592 190 6 25 chr9 76358523 76358685 -47717487 + GA-rich Low_complexity Low_complexity 1 159 0 5 1167 531 0 0 0 chr9 76358686 76358745 -47717427 + (GAAA)n Simple_repeat Simple_repeat 1 59 0 5 1167 445 253 0 0 chr9 76358942 76359021 -47717151 + RSINE1 SINE B4 3 81 -84 5 1167 220 348 54 0 chr9 76359021 76359034 -47717138 + B2_Mm2 SINE B2 2 98 -97 5 1167 681 292 28 11 chr9 76359036 76359320 -47716852 + L1MA6 LINE L1 5635 5923 -377 5 1167 978 265 96 17 chr9 76359332 76359624 -47716548 + ORR1D2 LTR MaLR 53 367 -3 5 1167 1094 44 0 7 chr9 76359983 76360119 -47716053 + B1_Mm SINE Alu 1 135 -12 5 1167 207 0 0 0 chr9 76360119 76360142 -47716030 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1167 281 47 0 23 chr9 76360144 76360188 -47715984 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1167 524 251 24 86 chr9 76364038 76364224 -47711948 - B3A SINE B2 -7 209 32 5 1167 803 194 0 0 chr9 76364236 76364375 -47711797 - B3 SINE B2 -77 139 1 5 1167 549 0 0 0 chr9 76364390 76364451 -47711721 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 5 1167 491 112 12 0 chr9 76364451 76364531 -47711641 + (TCTCCC)n Simple_repeat Simple_repeat 5 85 0 5 1167 688 290 5 20 chr9 76364531 76364709 -47711463 + MTE-int LTR MaLR 1353 1527 -53 5 1167 371 305 22 59 chr9 76364709 76364845 -47711327 + ORR1E LTR MaLR 1 131 -228 5 1167 236 289 157 0 chr9 76364846 76364891 -47711281 - Lx9 LINE L1 -1121 6523 6479 5 1167 351 0 0 0 chr9 76364891 76364930 -47711242 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1167 236 289 157 0 chr9 76364930 76364967 -47711205 - Lx9 LINE L1 -1166 6478 6429 5 1167 416 289 84 6 chr9 76364967 76365134 -47711038 + ORR1E LTR MaLR 138 317 -42 5 1167 327 191 0 0 chr9 76365228 76365296 -47710876 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1167 1025 309 26 22 chr9 76365319 76365587 -47710585 - B4A SINE B4 -21 271 3 5 1167 862 134 8 0 chr9 76366058 76366192 -47709980 + URR1B DNA MER1_type 83 217 -8 5 1167 578 209 33 0 chr9 76366906 76367059 -47709113 - Lx2 LINE L1 -49 6948 6791 5 1167 825 268 39 47 chr9 76367230 76367590 -47708582 + RLTR15 LTR ERVK 1 357 -2 5 1167 215 220 79 13 chr9 76367907 76368059 -47708113 + (TA)n Simple_repeat Simple_repeat 1 162 0 5 1167 247 280 0 0 chr9 76368854 76368929 -47707243 + L1MA7 LINE L1 6036 6110 -181 5 1167 36 40 0 0 chr9 76368983 76369033 -47707139 + AT_rich Low_complexity Low_complexity 1 50 0 5 1167 643 269 30 0 chr9 76369135 76369269 -47706903 + RSINE1 SINE B4 28 165 0 5 1167 335 228 0 11 chr9 76369269 76369362 -47706810 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1167 25 0 0 0 chr9 76369364 76369389 -47706783 + AT_rich Low_complexity Low_complexity 1 25 0 5 1167 304 165 17 17 chr9 76371355 76371472 -47704700 + CT-rich Low_complexity Low_complexity 1 117 0 5 1167 374 271 10 30 chr9 76371488 76371587 -47704585 - PB1D7 SINE Alu 0 120 24 5 1167 432 275 57 34 chr9 76371849 76372026 -47704146 + Lx9 LINE L1 7100 7280 -364 5 1167 393 117 0 0 chr9 76372146 76372206 -47703966 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 5 1167 327 25 0 0 chr9 76373763 76373803 -47702369 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1167 29 60 0 0 chr9 76373922 76373972 -47702200 + AT_rich Low_complexity Low_complexity 1 50 0 5 1167 255 175 0 0 chr9 76373994 76374051 -47702121 + CT-rich Low_complexity Low_complexity 2 58 0 5 1167 541 304 58 17 chr9 76374312 76374486 -47701686 - B3A SINE B2 -16 182 2 5 1167 373 281 124 78 chr9 76374614 76374872 -47701300 + RMER5 LTR ERV1 32 301 -233 5 1167 555 256 44 22 chr9 76374886 76375066 -47701106 + RMER5 LTR ERV1 336 519 -15 5 1167 420 200 71 0 chr9 76375585 76375670 -47700502 + ID_B1 SINE B4 108 198 -26 5 1167 211 300 69 10 chr9 76375777 76375878 -47700294 - MER5A DNA MER1_type -70 119 13 5 1167 23 54 0 0 chr9 76376825 76376862 -47699310 + AT_rich Low_complexity Low_complexity 1 37 0 5 1167 22 0 0 0 chr9 76377073 76377095 -47699077 + AT_rich Low_complexity Low_complexity 1 22 0 5 1167 423 0 0 0 chr9 76378238 76378285 -47697887 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1167 1827 138 37 14 chr9 76378648 76378975 -47697197 - MTC LTR MaLR 0 421 1 5 1167 552 317 251 2 chr9 76380201 76380615 -47695557 - MLT1F1 LTR MaLR -2 567 51 5 1167 3501 15 5 0 chr9 76380871 76381265 -47694907 + MTA_Mm LTR MaLR 1 396 0 5 1167 357 278 228 0 chr9 76381777 76381939 -47694233 + B3 SINE B2 1 199 -17 5 1167 668 221 0 23 chr9 76382226 76382356 -47693816 + B1_Mur1 SINE Alu 22 148 -1 5 1167 742 197 44 0 chr9 76383102 76383239 -47692933 - B1_Mur4 SINE Alu -7 143 1 5 1167 395 282 85 40 chr9 76383684 76383861 -47692311 + B3 SINE B2 27 211 -5 5 1167 324 343 52 23 chr9 76384561 76384734 -47691438 - MER97c DNA MER1_type? -912 178 1 5 1167 340 308 19 64 chr9 76385190 76385346 -47690826 - B1F1 SINE Alu 0 149 1 5 1167 244 264 82 131 chr9 76385641 76385763 -47690409 - PB1D9 SINE Alu -2 118 3 5 1167 408 71 0 0 chr9 76385934 76385990 -47690182 + (CCTA)n Simple_repeat Simple_repeat 1 56 0 5 1167 813 185 0 7 chr9 76386056 76386192 -47689980 + B1_Mus1 SINE Alu 7 141 -7 5 1167 197 147 53 13 chr9 76387406 76387482 -47688690 + A-rich Low_complexity Low_complexity 6 84 0 5 1167 1152 44 0 0 chr9 76387643 76387779 -47688393 + B1_Mus2 SINE Alu 1 136 -11 5 1167 411 21 0 0 chr9 76387779 76387827 -47688345 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 1167 210 91 0 0 chr9 76388121 76388154 -47688018 + (C)n Simple_repeat Simple_repeat 1 33 0 5 1167 369 252 23 38 chr9 76388240 76388372 -47687800 + CT-rich Low_complexity Low_complexity 4 133 0 5 1167 231 329 0 0 chr9 76390562 76390632 -47685540 - PB1D10 SINE Alu -2 115 46 5 1167 316 310 51 70 chr9 76390696 76390826 -47685346 - PB1D10 SINE Alu -21 126 1 5 1167 22 0 0 0 chr9 76391999 76392021 -47684151 + AT_rich Low_complexity Low_complexity 1 22 0 5 1167 444 267 51 51 chr9 76392047 76392185 -47683987 - B1F2 SINE Alu -9 140 3 5 1167 636 278 11 58 chr9 76392750 76392941 -47683231 + B3A SINE B2 1 182 -16 5 1167 247 235 21 77 chr9 76394934 76395005 -47681167 - RMER17D LTR ERVK -370 519 456 5 1167 950 117 6 0 chr9 76395005 76395184 -47680988 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1167 247 235 21 77 chr9 76395184 76395306 -47680866 - RMER17D LTR ERVK -434 455 337 5 1167 363 304 29 29 chr9 76395430 76395535 -47680637 + PB1D10 SINE Alu 9 113 -4 5 1167 374 319 109 12 chr9 76396025 76396190 -47679982 + MER20 DNA MER1_type 33 213 -6 6 1167 322 236 32 145 chr9 76396219 76396343 -47679829 + MLT1A1 LTR MaLR 3 112 -296 6 1167 781 172 20 7 chr9 76396368 76396514 -47679658 + B1_Mur4 SINE Alu 3 150 0 6 1167 618 14 0 0 chr9 76397060 76397131 -47679041 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 6 1167 2482 221 187 16 chr9 76398178 76398912 -47677260 + Lx7 LINE L1 6817 7676 -20 6 1167 185 284 39 51 chr9 76401126 76401204 -47674968 + MIR SINE MIR 119 195 -67 6 1167 258 32 0 0 chr9 76401473 76401504 -47674668 + (TAA)n Simple_repeat Simple_repeat 2 32 0 6 1167 232 291 0 0 chr9 76401509 76401564 -47674608 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1167 609 236 28 33 chr9 76402203 76402383 -47673789 - RMER10B LTR ERVL -26 372 194 6 1167 442 144 22 11 chr9 76402386 76402477 -47673695 + GA-rich Low_complexity Low_complexity 4 95 0 6 1167 918 222 48 73 chr9 76402477 76402749 -47673423 - RMER10B LTR ERVL -133 265 1 6 1167 318 235 144 22 chr9 76402875 76403014 -47673158 - L1M4 LINE L1 -1116 5030 4875 6 1167 337 310 87 61 chr9 76403091 76403287 -47672885 - L1M4 LINE L1 -1313 4833 4633 6 1167 204 40 0 0 chr9 76403646 76403671 -47672501 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1167 663 48 0 0 chr9 76404780 76404863 -47671309 + (GGGA)n Simple_repeat Simple_repeat 1 83 0 6 1167 246 105 0 0 chr9 76405076 76405114 -47671058 + (ATG)n Simple_repeat Simple_repeat 2 39 0 6 1167 345 302 42 79 chr9 76405670 76405911 -47670261 + Lx8 LINE L1 6412 6643 -830 6 1167 451 304 92 62 chr9 76405910 76406376 -47669796 + Lx8 LINE L1 6776 7255 -218 6 1167 396 0 0 0 chr9 76406571 76406615 -47669557 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1167 396 0 0 0 chr9 76406615 76406658 -47669514 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1167 1038 207 9 27 chr9 76407776 76407995 -47668177 - B3 SINE B2 0 216 2 6 1167 180 0 0 0 chr9 76408263 76408283 -47667889 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1167 805 254 51 48 chr9 76409302 76409596 -47666576 - Lx8 LINE L1 -2 7471 7177 6 1167 231 232 12 47 chr9 76410271 76410357 -47665815 + GA-rich Low_complexity Low_complexity 1 83 0 6 1167 219 58 36 55 chr9 76410379 76410434 -47665738 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1167 873 281 62 33 chr9 76411688 76411964 -47664208 + B4A SINE B4 9 292 0 6 1167 936 73 12 37 chr9 76411978 76412222 -47663950 + (CA)n Simple_repeat Simple_repeat 1 237 0 6 1167 288 0 0 0 chr9 76413272 76413304 -47662868 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1167 29 47 0 0 chr9 76413305 76413348 -47662824 + AT_rich Low_complexity Low_complexity 1 43 0 6 1167 32 57 0 0 chr9 76413422 76413475 -47662697 + AT_rich Low_complexity Low_complexity 1 53 0 6 1167 244 220 96 52 chr9 76413485 76413600 -47662572 + RLTR25A LTR ERVK 129 248 -855 6 1167 195 129 0 0 chr9 76414870 76414901 -47661271 + (CCG)n Simple_repeat Simple_repeat 3 33 0 6 1168 1502 183 62 115 chr9 76415537 76416007 -47660165 - Lx5 LINE L1 -3 7047 6603 6 1168 3489 157 67 25 chr9 76416009 76416768 -47659404 + Lx5 LINE L1 5742 6532 -518 6 1168 777 233 68 5 chr9 76416939 76417099 -47659073 + B3 SINE B2 5 166 -50 6 1168 378 0 0 0 chr9 76417099 76417141 -47659031 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1168 471 63 0 0 chr9 76417142 76417205 -47658967 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 6 1168 777 233 68 5 chr9 76417205 76417232 -47658940 + B3 SINE B2 167 201 -15 6 1168 25 0 0 0 chr9 76417589 76417614 -47658558 + AT_rich Low_complexity Low_complexity 1 25 0 6 1168 425 284 19 69 chr9 76417817 76417976 -47658196 - ID_B1 SINE B4 -4 220 70 6 1168 1593 243 85 3 chr9 76418126 76418502 -47657670 + MTD LTR MaLR 13 419 0 6 1168 496 231 51 26 chr9 76418522 76418685 -47657487 - ORR1D1 LTR MaLR -55 312 157 6 1168 291 179 0 0 chr9 76418685 76418752 -47657420 + GA-rich Low_complexity Low_complexity 1 67 0 6 1168 622 206 64 0 chr9 76418752 76418914 -47657258 - ORR1D1 LTR MaLR -190 194 3 6 1168 202 307 65 43 chr9 76419108 76419200 -47656972 + MIR SINE MIR 151 244 -18 6 1168 236 243 81 65 chr9 76421568 76421691 -47654481 + MER20B DNA MER1_type 657 781 -2 6 1168 1762 136 23 12 chr9 76422891 76423234 -47652938 + MTC LTR MaLR 3 417 -4 6 1168 408 143 54 0 chr9 76423880 76423992 -47652180 + GA-rich Low_complexity Low_complexity 1 118 0 6 1168 2167 174 56 10 chr9 76424030 76424424 -47651748 + MTC LTR MaLR 10 421 0 6 1168 1014 157 0 0 chr9 76424786 76424964 -47651208 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 6 1168 4901 155 45 28 chr9 76425126 76425532 -47650640 + RLTR42-int LTR ERVK 3843 4230 -1292 6 1168 186 43 0 0 chr9 76425532 76425555 -47650617 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1168 4901 155 45 28 chr9 76425555 76426150 -47650022 + RLTR42-int LTR ERVK 4231 4861 -661 6 1168 28 48 0 0 chr9 76426401 76426443 -47649729 + AT_rich Low_complexity Low_complexity 1 42 0 6 1168 395 257 21 29 chr9 76426517 76426657 -47649515 + L1MA5 LINE L1 5680 5818 -485 6 1168 340 288 124 16 chr9 76426729 76427036 -47649136 + L1MA5 LINE L1 5960 6299 -1 6 1168 188 325 102 16 chr9 76428896 76429024 -47647148 - MIR SINE MIR -4 258 120 6 1168 3789 47 17 4 chr9 76429292 76429761 -47646411 - MT2C_Mm LTR ERVL 0 475 1 6 1168 995 281 8 134 chr9 76430522 76430905 -47645267 - ORR1D2 LTR MaLR -2 368 11 6 1168 180 0 0 0 chr9 76431228 76431248 -47644924 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 6 1168 384 330 98 51 chr9 76431759 76432168 -47644004 - L2 LINE L2 -427 2992 2565 6 1168 325 308 81 40 chr9 76432525 76432674 -47643498 - HAL1-3A_ME LINE L1 -420 2438 2284 6 1168 184 253 11 11 chr9 76432700 76432792 -47643380 + CT-rich Low_complexity Low_complexity 3 94 0 6 1168 229 235 48 19 chr9 76432858 76432992 -47643180 + (TTAAA)n Simple_repeat Simple_repeat 1 137 0 6 1168 293 287 147 0 chr9 76433073 76433178 -47642994 + MIR SINE MIR 64 172 -90 6 1168 1334 78 6 16 chr9 76433194 76433376 -47642796 + B2_Mm2 SINE B2 2 181 -14 6 1168 733 277 9 5 chr9 76433590 76433804 -47642368 + B3 SINE B2 2 216 0 6 1168 622 279 88 10 chr9 76433819 76434011 -47642161 - B3 SINE B2 -8 208 2 6 1168 22 0 0 0 chr9 76434141 76434163 -47642009 + AT_rich Low_complexity Low_complexity 1 22 0 6 1168 366 217 0 0 chr9 76435286 76435378 -47640794 - Lx7 LINE L1 -247 7449 7358 6 1168 202 89 0 62 chr9 76435395 76435443 -47640729 + A-rich Low_complexity Low_complexity 3 47 0 6 1168 1041 233 98 0 chr9 76435462 76435749 -47640423 - Lx7 LINE L1 -357 7339 7025 6 1168 677 196 14 23 chr9 76435749 76435894 -47640278 - MTD LTR MaLR -262 134 1 6 1168 31 88 0 0 chr9 76437185 76437265 -47638907 + AT_rich Low_complexity Low_complexity 1 80 0 6 1168 1191 19 19 0 chr9 76437715 76437869 -47638303 + (TCTA)n Simple_repeat Simple_repeat 2 158 0 6 1168 257 270 107 79 chr9 76438169 76438346 -47637826 + MER53 DNA hAT 11 192 -1 6 1168 4112 196 37 9 chr9 76438863 76439621 -47636551 - Lx5 LINE L1 -3 7047 6269 6 1168 3808 169 6 16 chr9 76439621 76440570 -47635602 + Lx5 LINE L1 5403 6342 -708 6 1168 270 216 0 0 chr9 76440735 76440809 -47635363 + CT-rich Low_complexity Low_complexity 1 74 0 6 1168 253 365 78 10 chr9 76442012 76442217 -47633955 - L3 LINE CR1 -156 4333 4115 6 1168 920 296 84 63 chr9 76442435 76442944 -47633228 + RMER5 LTR ERV1 5 524 -10 6 1168 542 333 11 43 chr9 76443463 76443648 -47632524 + B3A SINE B2 4 182 -16 6 1168 22 0 0 0 chr9 76443647 76443669 -47632503 + AT_rich Low_complexity Low_complexity 1 22 0 6 1168 3379 166 83 24 chr9 76443777 76444451 -47631721 + Lx4B LINE L1 6338 7051 -7 6 1168 310 268 36 0 chr9 76445884 76445996 -47630176 - L1M2 LINE L1 -532 5765 5650 6 1168 207 69 0 0 chr9 76447080 76447109 -47629063 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1168 1154 61 0 33 chr9 76447109 76447261 -47628911 - B1_Mm SINE Alu 0 147 1 6 1168 339 25 0 0 chr9 76447618 76447658 -47628514 + (ATG)n Simple_repeat Simple_repeat 2 41 0 6 1168 23 0 0 0 chr9 76448091 76448114 -47628058 + AT_rich Low_complexity Low_complexity 1 23 0 6 1168 436 292 118 37 chr9 76448247 76448382 -47627790 - PB1D10 SINE Alu -1 148 3 6 1168 263 314 29 0 chr9 76448443 76448513 -47627659 - ID4_ SINE ID -10 73 2 6 1168 400 296 61 0 chr9 76449059 76449157 -47627015 - PB1D10 SINE Alu -8 109 6 6 1168 423 0 0 0 chr9 76450027 76450074 -47626098 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1168 1283 208 8 4 chr9 76450533 76450779 -47625393 - B4A SINE B4 -44 248 2 6 1168 1644 231 24 29 chr9 76451346 76451576 -47624596 - RMER17C LTR ERVK 0 410 190 6 1168 270 0 0 0 chr9 76451576 76451606 -47624566 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1168 1644 231 24 29 chr9 76451606 76451785 -47624387 - RMER17C LTR ERVK -221 189 3 6 1168 1195 228 139 13 chr9 76451787 76452089 -47624083 - Lx8 LINE L1 -166 7307 6968 6 1168 2782 194 88 34 chr9 76452125 76452770 -47623402 - RMER19B LTR ERVK 0 902 223 6 1168 356 330 68 0 chr9 76452776 76452879 -47623293 - Lx8 LINE L1 -1143 6330 6221 6 1168 387 41 0 0 chr9 76452949 76452998 -47623174 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1168 1685 317 43 35 chr9 76453305 76453814 -47622358 - Lx8 LINE L1 -95 5785 5275 6 1168 279 275 62 56 chr9 76453814 76453976 -47622196 - RSINE1 SINE B4 0 165 3 6 1168 1685 317 43 35 chr9 76453976 76454382 -47621790 - Lx8 LINE L1 -606 5274 4863 6 1168 1137 214 166 33 chr9 76454396 76454764 -47621408 - RMER1C Other Other -2 1340 924 6 1168 360 0 0 0 chr9 76455211 76455251 -47620921 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1168 1370 323 44 13 chr9 76455609 76456308 -47619864 - RMER1C Other Other -416 926 248 6 1168 23 0 0 0 chr9 76456737 76456760 -47619412 + AT_rich Low_complexity Low_complexity 1 23 0 6 1168 510 46 0 0 chr9 76456918 76456983 -47619189 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 6 1168 1739 130 4 7 chr9 76456999 76457277 -47618895 - Lx LINE L1 -7 6647 6371 6 1168 702 64 32 0 chr9 76457280 76457374 -47618798 - Lx LINE L1 -915 5739 5643 6 1168 376 267 0 16 chr9 76457390 76457512 -47618660 + L1M2 LINE L1 4657 4776 -1367 6 1168 42 71 0 0 chr9 76457957 76458041 -47618131 + AT_rich Low_complexity Low_complexity 1 84 0 6 1168 308 214 114 0 chr9 76458150 76458220 -47617952 - ID4_ SINE ID -4 79 2 6 1168 766 226 283 39 chr9 76460012 76460348 -47615824 + MTD LTR MaLR 2 419 0 7 1168 306 347 88 0 chr9 76460663 76460810 -47615362 + RSINE1 SINE B4 3 162 -3 7 1168 264 242 53 42 chr9 76461545 76461640 -47614532 + MIR SINE MIR 157 252 -10 7 1168 405 0 0 0 chr9 76461668 76461713 -47614459 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1168 206 231 0 19 chr9 76462831 76462884 -47613288 + CT-rich Low_complexity Low_complexity 1 52 0 7 1168 284 111 19 0 chr9 76463022 76463076 -47613096 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 7 1168 366 339 124 5 chr9 76463615 76463808 -47612364 + B3 SINE B2 1 216 0 7 1168 21 82 0 0 chr9 76463859 76463908 -47612264 + AT_rich Low_complexity Low_complexity 1 49 0 7 1168 244 315 16 107 chr9 76463924 76464045 -47612127 - MLT1B LTR MaLR -68 322 213 7 1168 700 270 58 30 chr9 76464053 76464322 -47611850 + L1MA4 LINE L1 5670 5942 -358 7 1168 598 288 84 18 chr9 76464941 76465167 -47611005 - MLT1B LTR MaLR -147 243 3 7 1168 201 309 40 24 chr9 76465228 76465354 -47610818 - MIR SINE MIR -64 198 71 7 1168 678 215 7 0 chr9 76465674 76465823 -47610349 - Lx9 LINE L1 -544 7100 6951 7 1168 1179 141 89 0 chr9 76465839 76466108 -47610064 + Lx9 LINE L1 7352 7644 0 7 1168 506 329 42 0 chr9 76466257 76466400 -47609772 + RSINE1 SINE B4 8 156 -9 7 1168 1853 237 25 121 chr9 76466847 76467523 -47608649 - RMER19C LTR ERVK 0 611 1 7 1168 2944 51 0 13 chr9 76468096 76468476 -47607696 + L1Md_F2 LINE L1 6207 6581 -1 7 1168 22 0 0 0 chr9 76468780 76468802 -47607370 + AT_rich Low_complexity Low_complexity 1 22 0 7 1168 21 36 0 0 chr9 76469209 76469237 -47606935 + AT_rich Low_complexity Low_complexity 1 28 0 7 1168 1219 47 0 0 chr9 76469574 76469722 -47606450 + B1_Mus1 SINE Alu 1 148 0 7 1168 252 38 0 102 chr9 76469732 76469820 -47606352 + (CAAAAA)n Simple_repeat Simple_repeat 1 79 0 7 1168 229 162 62 0 chr9 76469866 76469946 -47606226 + (CAAA)n Simple_repeat Simple_repeat 2 86 0 7 1168 504 0 0 0 chr9 76470075 76470131 -47606041 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1168 447 19 0 0 chr9 76470131 76470182 -47605990 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1168 271 392 77 37 chr9 76470956 76471253 -47604919 + L2 LINE L2 2666 2974 -445 7 1168 405 277 43 135 chr9 76472556 76472719 -47603453 + RMER15 LTR ERVL 337 484 -91 7 1168 22 35 0 0 chr9 76472919 76472948 -47603224 + AT_rich Low_complexity Low_complexity 1 29 0 7 1168 544 314 64 35 chr9 76472977 76473432 -47602740 + L1MA6 LINE L1 5833 6300 0 7 1168 525 266 40 0 chr9 76473516 76473640 -47602532 - B1_Mur1 SINE Alu -1 148 20 7 1168 29 0 0 0 chr9 76473917 76473946 -47602226 + AT_rich Low_complexity Low_complexity 1 29 0 7 1168 258 32 0 0 chr9 76473956 76473987 -47602185 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1168 654 126 0 0 chr9 76474024 76474127 -47602045 + (TTCCC)n Simple_repeat Simple_repeat 4 106 0 7 1168 1094 288 81 18 chr9 76474459 76474791 -47601381 + ORR1E LTR MaLR 2 354 -5 7 1168 373 315 7 0 chr9 76475181 76475324 -47600848 - L1M2 LINE L1 -925 5218 5075 7 1168 6141 31 37 5 chr9 76475348 76476103 -47600069 + L1Md_F2 LINE L1 5803 6581 -1 7 1168 537 58 0 0 chr9 76476124 76476193 -47599979 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 1168 297 0 0 0 chr9 76476292 76476325 -47599847 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1168 925 308 39 56 chr9 76476338 76476664 -47599508 - Lx9 LINE L1 -454 7190 6870 7 1168 3044 122 3 91 chr9 76476664 76477233 -47598939 + MURVY-LTR LTR ERV1 1 519 0 7 1168 925 308 39 56 chr9 76477233 76477370 -47598802 - Lx9 LINE L1 -775 6869 6735 7 1168 1626 269 48 98 chr9 76477374 76478492 -47597680 - L1_Mur3 LINE L1 -860 5020 3958 7 1168 254 130 65 0 chr9 76478491 76478537 -47597635 + Lx8 LINE L1 6605 6653 -820 7 1168 932 314 103 37 chr9 76478545 76479061 -47597111 + Lx8 LINE L1 6777 7326 -147 7 1168 440 307 144 74 chr9 76479343 76479642 -47596530 + ORR1E LTR MaLR 38 357 -2 7 1168 1121 78 0 0 chr9 76480215 76480356 -47595816 + B1_Mus1 SINE Alu 1 141 -7 7 1168 270 0 0 0 chr9 76480360 76480390 -47595782 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1168 621 76 0 0 chr9 76480487 76480579 -47595593 + (TA)n Simple_repeat Simple_repeat 2 93 0 7 1168 294 245 84 0 chr9 76481624 76481722 -47594450 - MIRb SINE MIR -29 239 127 7 1168 224 228 0 0 chr9 76481931 76481988 -47594184 + T-rich Low_complexity Low_complexity 1 57 0 7 1168 423 0 0 0 chr9 76482837 76482884 -47593288 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1168 2495 251 82 12 chr9 76483227 76483835 -47592337 + Lx9 LINE L1 6860 7518 -126 7 1168 204 40 0 0 chr9 76483835 76483860 -47592312 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1168 2495 251 82 12 chr9 76483860 76483984 -47592188 + Lx9 LINE L1 7519 7642 -2 7 1168 335 241 169 0 chr9 76484047 76484130 -47592042 - B3 SINE B2 -84 132 36 7 1168 23 105 0 0 chr9 76484232 76484318 -47591854 + AT_rich Low_complexity Low_complexity 1 86 0 7 1168 258 378 61 65 chr9 76485667 76485930 -47590242 + MLT1A LTR MaLR 19 280 -94 7 1168 25 0 0 0 chr9 76486267 76486292 -47589880 + AT_rich Low_complexity Low_complexity 1 25 0 7 1168 187 311 65 32 chr9 76486721 76486814 -47589358 - MIR SINE MIR -161 101 6 7 1168 753 164 233 21 chr9 76487485 76487678 -47588494 + RLTR40 LTR ERVK 14 247 -570 7 1168 23 33 0 0 chr9 76488077 76488107 -47588065 + AT_rich Low_complexity Low_complexity 1 30 0 7 1168 286 177 31 46 chr9 76488652 76488717 -47587455 + RMER15 LTR ERVL 2 65 -510 7 1168 1777 262 37 72 chr9 76488734 76489301 -47586871 + RMER15 LTR ERVL 29 575 0 7 1168 3565 62 94 2 chr9 76489459 76489961 -47586211 + L1_Mus3 LINE L1 6084 6631 -7 7 1168 262 226 86 56 chr9 76490921 76491011 -47585161 + PB1D10 SINE Alu 27 127 0 7 1168 180 0 0 0 chr9 76491286 76491306 -47584866 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1168 247 196 17 35 chr9 76492237 76492295 -47583877 + RMER15 LTR ERVL 22 78 -497 7 1168 8396 6 0 0 chr9 76492308 76493240 -47582932 - L1Md_T LINE L1 0 6582 5651 7 1168 2437 248 34 20 chr9 76493294 76493891 -47582281 - Lx9 LINE L1 -459 7185 6581 7 1168 186 343 58 19 chr9 76494292 76494396 -47581776 + L2a LINE L2 2957 3064 -311 7 1168 191 247 40 0 chr9 76494661 76494735 -47581437 + L2a LINE L2 3305 3422 -4 7 1168 586 267 7 0 chr9 76495212 76495347 -47580825 + B1_Mur2 SINE Alu 5 140 -9 7 1168 24 0 0 0 chr9 76495724 76495748 -47580424 + AT_rich Low_complexity Low_complexity 1 24 0 7 1168 31 0 0 0 chr9 76495814 76495845 -47580327 + AT_rich Low_complexity Low_complexity 1 31 0 7 1168 1920 219 67 30 chr9 76496513 76497022 -47579150 + Lx9 LINE L1 6871 7398 -246 7 1168 405 0 0 0 chr9 76497022 76497067 -47579105 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1168 430 188 30 0 chr9 76497081 76497182 -47578990 + Lx9 LINE L1 7505 7608 -36 7 1168 366 263 47 71 chr9 76497800 76497927 -47578245 + MT2B LTR ERVL 141 264 -337 7 1168 966 41 0 0 chr9 76497840 76497962 -47578210 + B1_Mus2 SINE Alu 26 147 0 7 1168 264 122 0 0 chr9 76497962 76498003 -47578169 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1168 249 308 60 30 chr9 76498909 76499043 -47577129 - MIRc SINE MIR -49 219 82 7 1168 2201 132 0 0 chr9 76500253 76500609 -47575563 + L1_Mm LINE L1 4652 5007 -876 1 1168 787 101 19 39 chr9 76500609 76500763 -47575409 + L1_Mus3 LINE L1 6488 6638 0 2 1168 295 200 0 30 chr9 76501807 76501883 -47574289 + L1MA9 LINE L1 5656 5746 -545 3 1168 222 118 0 0 chr9 76502024 76502058 -47574114 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 4 1168 3595 258 32 53 chr9 76502067 76503228 -47572944 + Lx9 LINE L1 6379 7514 -130 5 1168 51 31 0 0 chr9 76503387 76503452 -47572720 + AT_rich Low_complexity Low_complexity 1 65 0 6 1168 290 253 10 31 chr9 76503577 76503707 -47572465 + L1MA9 LINE L1 5814 5941 -359 3 1168 22 0 0 0 chr9 76503961 76503983 -47572189 + AT_rich Low_complexity Low_complexity 1 22 0 7 1168 28 0 0 0 chr9 76506375 76506403 -47569769 + AT_rich Low_complexity Low_complexity 1 28 0 8 1168 358 304 0 115 chr9 76506916 76507072 -47569100 + B1F SINE Alu 12 149 0 9 1168 570 15 0 0 chr9 76507515 76507582 -47568590 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1168 1100 36 14 0 chr9 76508159 76508299 -47567873 + (GGGAGA)n Simple_repeat Simple_repeat 3 144 0 1 1168 435 170 0 0 chr9 76508300 76508400 -47567772 + T-rich Low_complexity Low_complexity 1 100 0 1 1168 930 110 7 20 chr9 76508401 76508549 -47567623 - B1_Mus1 SINE Alu -1 147 2 1 1168 406 248 78 10 chr9 76509590 76509692 -47566480 - B1F2 SINE Alu 0 149 41 1 1168 1139 72 0 0 chr9 76509719 76509858 -47566314 - B1_Mus2 SINE Alu -8 139 1 1 1168 372 189 0 0 chr9 76510163 76510237 -47565935 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1168 21 0 0 0 chr9 76511951 76511972 -47564200 + AT_rich Low_complexity Low_complexity 1 21 0 1 1168 1198 328 84 3 chr9 76511998 76512567 -47563605 + Lx8 LINE L1 6279 6893 -580 1 1168 504 0 0 0 chr9 76512664 76512720 -47563452 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1168 328 315 157 5 chr9 76512874 76513059 -47563113 + Lx8 LINE L1 6912 7124 -349 1 1168 279 243 14 54 chr9 76513362 76513436 -47562736 + PB1D7 SINE Alu 18 88 -32 2 1168 614 291 26 19 chr9 76513553 76513707 -47562465 + B3A SINE B2 44 198 0 2 1168 992 229 153 13 chr9 76513719 76513903 -47562269 + RLTR20A1 LTR ERVK 1 190 -361 2 1168 894 73 0 0 chr9 76513903 76514039 -47562133 + (GA)n Simple_repeat Simple_repeat 1 136 0 2 1168 992 229 153 13 chr9 76514039 76514168 -47562004 + RLTR20A1 LTR ERVK 191 357 -194 2 1168 23 54 0 0 chr9 76514178 76514215 -47561957 + AT_rich Low_complexity Low_complexity 1 37 0 2 1168 914 210 55 20 chr9 76514733 76514932 -47561240 + RLTR20A1 LTR ERVK 336 541 0 2 1168 294 29 0 0 chr9 76515685 76515720 -47560452 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2 1168 1800 202 43 48 chr9 76516157 76516578 -47559594 - MTD LTR MaLR 0 419 1 2 1168 242 276 0 17 chr9 76517116 76517175 -47558997 - L2c LINE L2 0 3387 3330 2 1168 339 348 6 12 chr9 76517239 76517402 -47558770 - MER5A1 DNA MER1_type -4 162 1 2 1168 1633 87 4 13 chr9 76517950 76518184 -47557988 - L1_Mus2 LINE L1 0 6566 6335 2 1168 433 129 29 0 chr9 76518735 76518805 -47557367 + MTC LTR MaLR 3 74 -347 3 1168 210 71 0 0 chr9 76519046 76519074 -47557098 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1168 5100 164 21 10 chr9 76519074 76519970 -47556202 - Lx4B LINE L1 -14 7044 6139 3 1168 1948 169 3 0 chr9 76519973 76520322 -47555850 - L1_Mur2 LINE L1 -87 5790 5441 3 1168 2976 41 7 79 chr9 76520406 76520826 -47555346 - RLTR10 LTR ERVK 0 390 1 3 1168 16279 24 1 1 chr9 76520828 76522772 -47553400 - RLTR10-int LTR ERVK -3 1984 41 3 1168 3164 44 10 0 chr9 76522782 76523168 -47553004 - RLTR10 LTR ERVK 0 390 1 3 1168 630 71 0 0 chr9 76523340 76523424 -47552748 + (TTC)n Simple_repeat Simple_repeat 3 86 0 3 1168 944 131 6 0 chr9 76523425 76523600 -47552572 + (TC)n Simple_repeat Simple_repeat 2 177 0 3 1168 254 321 40 20 chr9 76525165 76525365 -47550807 - L1MC4a LINE L1 -3 7879 7676 3 1168 630 336 90 0 chr9 76525491 76525747 -47550425 + B4A SINE B4 3 281 -11 3 1168 207 194 48 0 chr9 76526034 76526096 -47550076 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1168 27 62 0 0 chr9 76526212 76526260 -47549912 + AT_rich Low_complexity Low_complexity 1 48 0 4 1168 371 299 29 0 chr9 76526403 76526540 -47549632 - Lx7 LINE L1 -348 7348 7208 4 1168 1253 258 39 11 chr9 76526622 76527058 -47549114 + L1_Mur3 LINE L1 4999 5446 -434 4 1168 396 0 0 0 chr9 76527058 76527102 -47549070 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1168 495 48 0 0 chr9 76527102 76527164 -47549008 + (GGA)n Simple_repeat Simple_repeat 2 63 0 4 1168 971 161 18 0 chr9 76527211 76527379 -47548793 - MurERV4-int LTR ERVK -2572 2688 2518 4 1168 2144 215 130 49 chr9 76527379 76528166 -47548006 + RMER6C LTR ERVK 1 720 -36 4 1168 4955 193 37 15 chr9 76528166 76528326 -47547846 - MurERV4-int LTR ERVK -2830 2430 2270 4 1168 1242 113 0 3 chr9 76528326 76528665 -47547507 + (TTC)n Simple_repeat Simple_repeat 1 337 0 4 1168 186 43 0 0 chr9 76528665 76528687 -47547485 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1168 1080 80 7 0 chr9 76528687 76528825 -47547347 - B1_Mus1 SINE Alu -9 139 1 4 1168 4955 184 66 14 chr9 76528825 76530146 -47546026 - MurERV4-int LTR ERVK -2991 2269 874 4 1168 219 281 43 86 chr9 76530146 76530286 -47545886 - L4 LINE RTE -1743 286 153 5 1168 339 152 17 0 chr9 76530286 76530345 -47545827 - MurERV4-int LTR ERVK -4527 733 674 4 1168 341 161 16 0 chr9 76530359 76530421 -47545751 - MurERV4-int LTR ERVK -4524 736 674 4 1168 341 161 16 0 chr9 76530435 76530497 -47545675 - MurERV4-int LTR ERVK -4524 736 674 4 1168 314 169 17 0 chr9 76530511 76530570 -47545602 - MurERV4-int LTR ERVK -4524 736 677 4 1168 2181 85 0 0 chr9 76530570 76530865 -47545307 - L1_Mur1 LINE L1 -143 5743 5449 5 1168 21 57 0 0 chr9 76530865 76530900 -47545272 + AT_rich Low_complexity Low_complexity 1 35 0 5 1168 3230 200 33 6 chr9 76530904 76531298 -47544874 - MurERV4-int LTR ERVK -4572 688 288 4 1168 249 57 0 0 chr9 76531298 76531333 -47544839 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1168 3230 200 33 6 chr9 76531333 76531608 -47544564 - MurERV4-int LTR ERVK -4973 287 2 4 1168 2468 190 6 28 chr9 76531608 76532079 -47544093 - RMER4A LTR ERVK 0 466 6 4 1168 601 332 13 37 chr9 76532094 76532279 -47543893 + Lx7 LINE L1 7058 7237 -459 5 1168 2185 141 145 19 chr9 76532279 76532707 -47543465 + RLTR45 LTR ERVK 1 482 0 5 1168 601 332 13 37 chr9 76532707 76532821 -47543351 + Lx7 LINE L1 7238 7350 -346 5 1168 4237 108 3 7 chr9 76532900 76533513 -47542659 + L1_Mus4 LINE L1 6019 6629 -7 5 1168 22 35 0 0 chr9 76534033 76534062 -47542110 + AT_rich Low_complexity Low_complexity 1 29 0 5 1168 1141 205 94 4 chr9 76534210 76534455 -47541717 + ORR1D1 LTR MaLR 1 267 -107 5 1168 491 275 122 5 chr9 76534497 76534745 -47541427 + RLTR10A LTR ERVK 114 411 0 5 1168 364 191 51 41 chr9 76534761 76534859 -47541313 + RLTR10-int LTR ERVK 318 416 -1571 5 1168 1117 303 29 10 chr9 76535266 76535782 -47540390 + MMERVK10C-int LTR ERVK 3095 3620 -3961 6 1168 271 186 27 41 chr9 76535869 76535942 -47540230 + MMERVK10C-int LTR ERVK 3791 3855 -3726 6 1168 408 325 35 37 chr9 76536029 76536431 -47539741 + RLTR45-int LTR ERVK 3544 3944 -2598 6 1168 1622 264 59 45 chr9 76536622 76538165 -47538007 + RLTR45-int LTR ERVK 6529 7040 -204 6 1168 495 264 130 13 chr9 76538194 76538442 -47537730 + RLTR10A LTR ERVK 114 411 0 6 1168 638 191 9 0 chr9 76538442 76538557 -47537615 + ORR1D1 LTR MaLR 259 374 0 5 1168 3370 253 94 10 chr9 76539601 76540578 -47535594 - Lx6 LINE L1 0 7460 6402 6 1168 182 37 37 0 chr9 76541333 76541360 -47534812 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 1168 514 221 84 42 chr9 76541424 76541566 -47534606 - B1_Mur2 SINE Alu -1 148 1 6 1168 198 0 0 0 chr9 76541581 76541603 -47534569 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1168 432 146 0 0 chr9 76542215 76542304 -47533868 + (TCTG)n Simple_repeat Simple_repeat 2 90 0 6 1168 568 272 36 22 chr9 76542517 76542656 -47533516 - B1_Mur1 SINE Alu -8 141 1 6 1168 25 0 0 0 chr9 76545442 76545467 -47530705 + AT_rich Low_complexity Low_complexity 1 25 0 6 1168 234 349 0 0 chr9 76545535 76545598 -47530574 + MER2B DNA MER2_type 248 310 -26 7 1169 269 322 27 49 chr9 76546509 76546616 -47529556 + B1F SINE Alu 6 119 -8 7 1169 270 374 0 10 chr9 76546720 76546820 -47529352 - MER33 DNA MER1_type -224 100 2 7 1169 674 265 29 0 chr9 76547494 76547664 -47528508 - MER67C LTR ERV1 -162 549 375 7 1169 387 120 66 13 chr9 76548218 76548294 -47527878 - RMER6C LTR ERVK 0 690 611 7 1169 1660 132 24 3 chr9 76548294 76548590 -47527582 - RMER6-int LTR ERVK -294 2883 2582 7 1169 226 245 0 0 chr9 76548591 76548640 -47527532 - LSU-rRNA_Hsa rRNA rRNA -3197 1838 1790 7 1169 7577 163 54 30 chr9 76548674 76548877 -47527295 - RMER6-int LTR ERVK -1441 1736 1501 7 1169 1454 36 0 5 chr9 76548877 76549100 -47527072 + (TTC)n Simple_repeat Simple_repeat 1 221 0 7 1169 1051 96 0 12 chr9 76549100 76549269 -47526903 + (TTCTCC)n Simple_repeat Simple_repeat 6 172 0 7 1169 1511 94 0 32 chr9 76549269 76549320 -47526852 - L1_Mus2 LINE L1 -13 6553 6504 7 1169 3339 40 2 0 chr9 76549320 76549715 -47526457 - MTA_Mm LTR MaLR 0 396 1 7 1169 1511 94 0 32 chr9 76549715 76549883 -47526289 - L1_Mus2 LINE L1 -63 6503 6341 7 1169 7577 163 54 30 chr9 76549883 76551202 -47524970 - RMER6-int LTR ERVK -1677 1500 176 7 1169 381 128 13 13 chr9 76551198 76551277 -47524895 + RMER6-int LTR ERVK 3089 3167 -10 8 1169 1255 158 97 28 chr9 76551295 76551543 -47524629 + RMER6C LTR ERVK 25 289 -401 8 1169 973 175 129 14 chr9 76551543 76551752 -47524420 - RMER19B LTR ERVK -365 537 305 8 1169 2069 110 3 37 chr9 76551765 76552087 -47524085 - RLTR10E LTR ERVK 0 311 1 8 1169 630 69 0 29 chr9 76552106 76552211 -47523961 + Lx LINE L1 6553 6654 0 8 1169 221 204 0 41 chr9 76552303 76552400 -47523772 + (CAGTT)n Simple_repeat Simple_repeat 3 95 0 8 1169 1020 131 85 6 chr9 76552455 76552632 -47523540 + RMER6C LTR ERVK 500 690 0 8 1169 207 0 0 0 chr9 76553648 76553671 -47522501 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1169 218 345 114 11 chr9 76554972 76555060 -47521112 - ID_B1 SINE B4 -32 192 96 8 1169 234 0 0 0 chr9 76556183 76556209 -47519963 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 8 1169 997 129 0 0 chr9 76556235 76556374 -47519798 + B1_Mus1 SINE Alu 2 140 -8 8 1169 201 74 0 0 chr9 76556374 76556401 -47519771 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 8 1169 25 0 0 0 chr9 76556435 76556460 -47519712 + AT_rich Low_complexity Low_complexity 1 25 0 9 1169 333 0 0 0 chr9 76556499 76556536 -47519636 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1169 286 321 38 0 chr9 76556592 76556698 -47519474 - MER58B DNA MER1_type 0 341 232 9 1169 4691 59 7 0 chr9 76557025 76557617 -47518555 - L1_Mus1 LINE L1 -96 6471 5876 9 1169 1088 57 0 0 chr9 76557617 76557757 -47518415 + L1_Mus1 LINE L1 6428 6567 0 9 1169 585 0 0 0 chr9 76559175 76559240 -47516932 + (TCC)n Simple_repeat Simple_repeat 3 67 0 9 1169 1363 188 157 40 chr9 76560307 76560684 -47515488 + RMER6C LTR ERVK 4 424 -266 9 1169 238 119 24 0 chr9 76560686 76560728 -47515444 - RMER2 LTR ERV1 0 567 525 9 1169 2083 131 14 48 chr9 76560748 76561100 -47515072 - RMER2 LTR ERV1 -31 536 197 9 1169 7623 152 62 99 chr9 76561100 76561186 -47514986 + L1_Mur2 LINE L1 3358 3442 -2435 9 1169 261 0 0 0 chr9 76561186 76561215 -47514957 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1169 7623 152 62 99 chr9 76561215 76562909 -47513263 + L1_Mur2 LINE L1 3443 5070 -807 9 1169 2172 266 219 3 chr9 76562906 76563571 -47512601 - RMER1A Other Other -221 809 1 9 1169 527 294 194 20 chr9 76563585 76563786 -47512386 - RMER1A Other Other -794 236 1 1 1169 937 235 233 10 chr9 76563759 76564047 -47512125 - RMER1B Other Other -654 412 61 1 1169 213 196 0 42 chr9 76565879 76565927 -47510245 + T-rich Low_complexity Low_complexity 4 49 0 1 1169 22 35 0 0 chr9 76566166 76566195 -47509977 + AT_rich Low_complexity Low_complexity 1 29 0 1 1169 6289 102 31 23 chr9 76567806 76567822 -47508350 - Lx3_Mus LINE L1 -2 7007 6993 1 1169 207 0 0 0 chr9 76567822 76567845 -47508327 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1 1169 6289 102 31 23 chr9 76567845 76568795 -47507377 - Lx3_Mus LINE L1 -17 6992 6033 1 1169 309 211 12 62 chr9 76568963 76569044 -47507128 + B1_Mus1 SINE Alu 3 79 -69 1 1169 2065 194 36 44 chr9 76569083 76569633 -47506539 - MYSERV-int LTR ERVK -676 5874 5329 1 1169 542 206 8 4 chr9 76569663 76569774 -47506398 - MurERV4-int LTR ERVK -3338 1922 1748 1 1169 4421 246 105 93 chr9 76569777 76571188 -47504984 - MurERV4-int LTR ERVK -3658 1602 175 1 1169 510 17 0 0 chr9 76571188 76571247 -47504925 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1169 4421 246 105 93 chr9 76571247 76571418 -47504754 - MurERV4-int LTR ERVK -5086 174 1 1 1169 473 248 69 79 chr9 76571428 76571729 -47504443 - RMER4B LTR ERVK -8 577 341 1 1169 320 216 38 38 chr9 76571929 76572035 -47504137 - MLT1A1 LTR MaLR -2 406 301 1 1169 25 31 0 0 chr9 76572098 76572130 -47504042 + AT_rich Low_complexity Low_complexity 1 32 0 1 1169 291 211 54 40 chr9 76572130 76572204 -47503968 - MLT1A1 LTR MaLR -262 146 72 1 1169 7415 49 0 0 chr9 76572213 76573108 -47503064 + L1_Mus1 LINE L1 5673 6567 0 1 1169 269 87 87 0 chr9 76573116 76573162 -47503010 - MLT1A1 LTR MaLR -357 51 2 1 1169 558 51 0 0 chr9 76573178 76573256 -47502916 - L1_Mus2 LINE L1 0 6566 6489 1 1169 202 365 156 11 chr9 76573366 76573629 -47502543 + L3 LINE CR1 4009 4309 -180 1 1169 297 267 122 83 chr9 76574547 76574727 -47501445 - B3 SINE B2 0 216 30 1 1169 534 31 0 0 chr9 76575014 76575078 -47501094 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1169 7831 58 5 1 chr9 76576468 76578165 -47498007 - L1Md_F3 LINE L1 0 6584 4892 1 1169 12292 43 0 1 chr9 76578165 76579689 -47496483 + L1Md_F3 LINE L1 3349 4870 -1013 1 1169 545 218 134 54 chr9 76580355 76580632 -47495540 + L1M2 LINE L1 5301 5599 -692 1 1169 1448 222 106 119 chr9 76581771 76582165 -47494007 - RMER6D LTR ERVK 0 720 367 1 1169 270 116 0 0 chr9 76582165 76582208 -47493964 + (AACTG)n Simple_repeat Simple_repeat 5 47 0 1 1169 1448 222 106 119 chr9 76582208 76582543 -47493629 - RMER6D LTR ERVK -354 366 2 1 1169 714 243 23 58 chr9 76582610 76582868 -47493304 + L1_Rod LINE L1 889 1137 -6471 1 1169 1035 181 81 49 chr9 76582898 76583182 -47492990 + L1_Rod LINE L1 1294 1586 -4261 1 1169 8685 26 3 0 chr9 76583183 76584181 -47491991 - IAPEz-int LTR ERVK -78 6403 5403 1 1169 21142 36 41 4 chr9 76584159 76586731 -47489441 - IAPEz-int LTR ERVK -3807 2674 8 1 1169 3076 8 43 0 chr9 76586731 76587083 -47489089 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1169 1014 208 11 106 chr9 76587083 76587432 -47488740 + L1_Rod LINE L1 1582 1897 -3950 1 1169 537 277 57 26 chr9 76587429 76587659 -47488513 + L1_Rod LINE L1 2729 2965 -2882 1 1169 1601 247 85 36 chr9 76587662 76588322 -47487850 + L1_Rod LINE L1 3109 3800 -2047 1 1169 1283 252 123 29 chr9 76588972 76589571 -47486601 + L1_Rod LINE L1 3789 4867 -980 1 1169 407 275 101 13 chr9 76589618 76589844 -47486328 + L1_Mur3 LINE L1 5046 5337 -809 1 1169 420 240 20 0 chr9 76589841 76589941 -47486231 + Lx5 LINE L1 6711 6812 -238 1 1169 30603 83 18 65 chr9 76589938 76596586 -47479586 - L1Md_F2 LINE L1 -12 6570 261 1 1169 754 251 106 16 chr9 76596567 76596822 -47479350 + Lx6 LINE L1 7180 7457 -3 1 1169 3011 152 114 25 chr9 76596854 76597541 -47478631 - L1_Mur3 LINE L1 -2531 3349 2602 1 1169 3063 285 87 42 chr9 76597670 76599051 -47477121 + Lx9 LINE L1 6058 7644 0 1 1169 6196 206 45 29 chr9 76600746 76602124 -47474048 + Lx6 LINE L1 5045 6397 -1063 1 1169 1716 208 16 200 chr9 76602124 76602870 -47473302 + RMER19C LTR ERVK 1 609 -2 1 1169 6196 255 70 52 chr9 76602870 76603835 -47472337 + Lx6 LINE L1 6398 7442 -18 1 1169 378 0 0 0 chr9 76603835 76603877 -47472295 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1169 1416 274 77 43 chr9 76604456 76604866 -47471306 - Lx8 LINE L1 -704 6769 6342 1 1169 378 0 0 0 chr9 76604866 76604908 -47471264 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1 1169 1416 274 77 43 chr9 76604908 76605004 -47471168 - Lx8 LINE L1 -1132 6341 6246 1 1169 539 256 16 14 chr9 76605236 76605372 -47470800 + MT2A LTR ERVL 321 461 -72 1 1169 214 164 50 25 chr9 76605396 76605515 -47470657 + (TTATA)n Simple_repeat Simple_repeat 2 123 0 1 1169 227 200 0 0 chr9 76605559 76605594 -47470578 + Lx8 LINE L1 6535 6569 -904 1 1169 390 129 0 0 chr9 76605635 76605697 -47470475 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1169 1531 294 34 75 chr9 76605698 76605905 -47470267 + L1_Mur3 LINE L1 3519 3708 -2172 1 1169 764 263 48 5 chr9 76605905 76606111 -47470061 + B3 SINE B2 2 216 0 1 1169 1531 294 34 75 chr9 76606111 76606775 -47469397 + L1_Mur3 LINE L1 3709 4355 -1525 1 1169 246 32 0 0 chr9 76606775 76606806 -47469366 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1169 504 32 0 0 chr9 76606863 76606925 -47469247 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 1 1169 732 82 18 9 chr9 76607314 76607425 -47468747 - L1_Mur1 LINE L1 -3591 2295 2184 1 1169 209 265 0 20 chr9 76607466 76607516 -47468656 + CT-rich Low_complexity Low_complexity 3 51 0 1 1169 206 0 0 65 chr9 76609144 76609175 -47466997 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1169 234 0 0 0 chr9 76609378 76609404 -47466768 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1169 467 178 40 4 chr9 76611044 76611140 -47465032 + B3 SINE B2 3 100 -98 1 1169 25 65 0 0 chr9 76612068 76612114 -47464058 + AT_rich Low_complexity Low_complexity 1 46 0 1 1169 22 0 0 0 chr9 76612148 76612170 -47464002 + AT_rich Low_complexity Low_complexity 1 22 0 1 1169 790 178 44 0 chr9 76613017 76613152 -47463020 + B1_Mur3 SINE Alu 1 141 -8 1 1169 209 33 0 32 chr9 76613154 76613185 -47462987 + (CAAAC)n Simple_repeat Simple_repeat 5 34 0 1 1169 216 97 0 0 chr9 76613187 76613218 -47462954 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 1 1169 22 0 0 0 chr9 76613381 76613403 -47462769 + AT_rich Low_complexity Low_complexity 1 22 0 1 1169 495 0 0 0 chr9 76614685 76614740 -47461432 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1169 225 0 0 0 chr9 76614740 76614764 -47461408 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1169 447 257 154 7 chr9 76615185 76615334 -47460838 - MTEb LTR MaLR -12 367 197 1 1169 219 125 25 0 chr9 76615423 76615463 -47460709 + B3A SINE B2 1 41 -157 1 1169 1142 155 162 4 chr9 76615495 76615748 -47460424 + RLTR40 LTR ERVK 19 311 -506 1 1169 229 198 47 47 chr9 76615748 76615833 -47460339 - L1M2 LINE L1 -949 5896 5812 1 1169 229 211 0 0 chr9 76615892 76615944 -47460228 - L1M2 LINE L1 -4318 2531 2480 1 1169 1013 211 199 105 chr9 76616262 76616749 -47459423 + MT2A LTR ERVL 1 533 0 1 1169 10948 171 67 30 chr9 76616749 76618897 -47457275 + MERVL_2A-int LTR ERVL 1 2227 -3534 1 1169 4996 117 11 65 chr9 76619330 76620178 -47455994 - RLTR13B4 LTR ERVK 0 803 2 1 1169 5149 169 48 2 chr9 76620187 76621081 -47455091 + MERVL_2A-int LTR ERVL 2200 3134 -2627 1 1169 1467 182 8 8 chr9 76621081 76621330 -47454842 - 7SK RNA RNA -81 250 2 1 1169 2632 135 122 18 chr9 76621333 76621785 -47454387 + MERVL_2A-int LTR ERVL 3139 3637 -2124 1 1169 182 304 83 56 chr9 76622585 76622693 -47453479 - MIR SINE MIR -139 123 13 1 1169 22 0 0 0 chr9 76622904 76622926 -47453246 + AT_rich Low_complexity Low_complexity 1 22 0 1 1169 5142 175 22 49 chr9 76623921 76625014 -47451158 - L1_Mur2 LINE L1 -218 5659 4597 1 1169 9921 93 7 1 chr9 76625014 76627102 -47449070 + L1_Mus1 LINE L1 4447 6544 -23 1 1169 30 0 0 0 chr9 76627141 76627171 -47449001 + AT_rich Low_complexity Low_complexity 1 30 0 1 1169 5120 110 65 5 chr9 76627172 76627986 -47448186 - Lx3A LINE L1 -1 6980 6118 1 1169 1974 147 93 41 chr9 76627987 76628405 -47447767 - L1_Mur2 LINE L1 -1291 4586 4147 1 1169 227 356 14 14 chr9 76628429 76628503 -47447669 + ID4_ SINE ID 5 78 -5 1 1169 336 48 0 0 chr9 76628754 76628796 -47447376 + (TATG)n Simple_repeat Simple_repeat 4 45 0 1 1169 342 0 0 0 chr9 76628935 76628973 -47447199 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1169 189 0 0 0 chr9 76628980 76629001 -47447171 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1169 448 344 46 0 chr9 76629001 76629132 -47447040 - RSINE1 SINE B4 -26 139 3 1 1169 1680 240 41 5 chr9 76629220 76629609 -47446563 - MTD LTR MaLR -14 405 3 1 1169 1375 237 56 46 chr9 76632396 76632808 -47443364 - RMER15 LTR ERVL -138 437 22 1 1169 321 217 0 0 chr9 76632894 76632954 -47443218 - RMER15 LTR ERVL -515 60 1 1 1169 981 83 0 7 chr9 76633093 76633239 -47442933 - L1_Mus1 LINE L1 0 6567 6423 1 1169 23 0 0 0 chr9 76633393 76633416 -47442756 + AT_rich Low_complexity Low_complexity 1 23 0 1 1169 609 199 6 12 chr9 76633465 76633633 -47442539 + GA-rich Low_complexity Low_complexity 1 167 0 1 1169 786 319 53 84 chr9 76633739 76633945 -47442227 + MTD LTR MaLR 1 206 -213 1 1169 3660 34 113 2 chr9 76633945 76634412 -47441760 + MURVY-LTR LTR ERV1 1 519 0 1 1169 786 271 98 67 chr9 76634412 76634646 -47441526 + MTD LTR MaLR 192 404 -15 1 1169 22 35 0 0 chr9 76635021 76635050 -47441122 + AT_rich Low_complexity Low_complexity 1 29 0 1 1169 445 153 10 30 chr9 76635501 76635602 -47440570 + GA-rich Low_complexity Low_complexity 2 100 0 1 1169 32 26 0 0 chr9 76635883 76635922 -47440250 + AT_rich Low_complexity Low_complexity 1 39 0 1 1169 1335 151 14 0 chr9 76635983 76636202 -47439970 + URR1B DNA MER1_type 4 225 0 1 1169 286 78 0 0 chr9 76636753 76636804 -47439368 - Lx LINE L1 0 6654 6604 1 1169 5113 113 33 6 chr9 76636805 76637590 -47438582 + RLTR13D1 LTR ERVK 1 806 0 1 1169 2035 108 23 32 chr9 76637590 76637934 -47438238 - L1_Mus3 LINE L1 -46 6592 6252 1 1169 225 295 11 11 chr9 76638735 76638824 -47437348 + (TTTA)n Simple_repeat Simple_repeat 2 90 0 1 1169 25 95 0 0 chr9 76641427 76641501 -47434671 + AT_rich Low_complexity Low_complexity 1 74 0 1 1169 746 260 33 55 chr9 76641533 76641881 -47434291 + L1_Rod LINE L1 1176 1514 -4333 1 1169 746 324 45 30 chr9 76642174 76642263 -47433909 - L1MA5 LINE L1 -364 5936 5855 1 1169 1132 223 148 6 chr9 76642263 76642588 -47433584 - ORR1D1 LTR MaLR 0 374 4 1 1169 746 324 45 30 chr9 76642588 76643073 -47433099 - L1MA5 LINE L1 -446 5854 5353 1 1169 783 333 74 16 chr9 76643167 76643490 -47432682 - Lx8 LINE L1 -165 7308 6967 1 1169 584 282 26 26 chr9 76643489 76643682 -47432490 - Lx8 LINE L1 -642 6831 6639 1 1169 391 243 0 36 chr9 76643715 76643826 -47432346 - L1_Mur3 LINE L1 -1913 3967 3861 1 1169 312 180 37 74 chr9 76643833 76643941 -47432231 - L1_Mur3 LINE L1 -2161 3719 3616 1 1169 4368 152 46 4 chr9 76643976 76644734 -47431438 - Lx LINE L1 -3 6651 5862 1 1169 2999 127 21 13 chr9 76644731 76645203 -47430969 - Lx3_Mus LINE L1 0 7009 6534 1 1169 7831 82 33 12 chr9 76645203 76646406 -47429766 + Lx3_Mus LINE L1 4750 5962 -1047 1 1169 8079 32 8 0 chr9 76646406 76647371 -47428801 + L1Md_F3 LINE L1 5598 6570 -14 1 1169 5990 95 14 43 chr9 76647371 76647901 -47428271 + Lx3_Mus LINE L1 5963 6480 -529 1 1169 983 320 67 7 chr9 76648175 76648880 -47427292 - L1_Mur3 LINE L1 -3852 2028 1282 1 1169 201 192 0 71 chr9 76649050 76649134 -47427038 + A-rich Low_complexity Low_complexity 3 80 0 1 1169 1189 284 116 55 chr9 76649170 76649517 -47426655 - Lx7 LINE L1 -374 7322 6949 1 1169 1395 202 32 106 chr9 76649517 76649921 -47426251 + ORR1D1 LTR MaLR 1 374 0 2 1169 1189 284 116 55 chr9 76649921 76650065 -47426107 - Lx7 LINE L1 -748 6948 6801 1 1169 999 289 30 38 chr9 76650060 76650535 -47425637 - L1_Mur3 LINE L1 -6405 1323 853 1 1169 1319 192 211 51 chr9 76652457 76652870 -47423302 + RMER5 LTR ERV1 2 479 -55 2 1169 218 237 227 20 chr9 76652951 76653080 -47423092 - L2c LINE L2 -7 3380 3197 2 1169 275 210 32 0 chr9 76653538 76653600 -47422572 - B3 SINE B2 -6 210 147 2 1169 310 248 44 11 chr9 76653652 76653763 -47422409 + B2_Mm2 SINE B2 4 129 -64 2 1169 390 21 0 0 chr9 76654497 76654544 -47421628 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1169 444 37 0 0 chr9 76654545 76654599 -47421573 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1169 3885 199 94 13 chr9 76655285 76656348 -47419824 - Lx4A LINE L1 -947 6111 4948 2 1169 285 284 80 0 chr9 76656493 76656581 -47419591 + Lx6 LINE L1 7230 7324 -136 2 1169 267 232 12 35 chr9 76656585 76656670 -47419502 + CT-rich Low_complexity Low_complexity 5 87 0 2 1169 37896 30 0 1 chr9 76657411 76663668 -47412504 - L1Md_T LINE L1 0 6585 236 2 1169 877 301 42 28 chr9 76664182 76664609 -47411563 - L1MC1 LINE L1 -280 6053 5621 2 1169 1362 235 37 176 chr9 76664609 76665121 -47411051 + RLTR18B LTR ERVK 1 441 -71 2 1169 411 275 88 5 chr9 76665187 76665381 -47410791 - Lx9 LINE L1 -19 7625 7416 2 1169 2256 337 63 13 chr9 76666544 76667037 -47409135 - Lx8 LINE L1 -254 7219 6708 2 1169 528 45 0 0 chr9 76667037 76667104 -47409068 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1169 2256 337 63 13 chr9 76667104 76667596 -47408576 - Lx8 LINE L1 -766 6707 6186 2 1169 1155 353 53 18 chr9 76668112 76668713 -47407459 - Lx8 LINE L1 -198 7275 6654 2 1169 1185 62 6 0 chr9 76668734 76668896 -47407276 - L1Md_F3 LINE L1 -14 6570 6408 2 1169 5385 36 1 0 chr9 76668896 76669542 -47406630 + L1Md_F3 LINE L1 5711 6357 -227 2 1169 3088 163 80 26 chr9 76669542 76669582 -47406590 - RMER19C LTR ERVK -2 609 575 2 1169 2598 77 11 30 chr9 76669582 76669943 -47406229 + IAPEY2_LTR LTR ERVK 1 354 -3 2 1169 3088 163 80 26 chr9 76669943 76670480 -47405692 - RMER19C LTR ERVK -37 574 1 2 1169 555 319 70 11 chr9 76670482 76670669 -47405503 - Lx8 LINE L1 -818 6655 6458 2 1169 517 98 96 21 chr9 76670682 76670776 -47405396 + RLTR13C2 LTR ERVK 708 808 0 2 1169 286 264 124 0 chr9 76670850 76670971 -47405201 - Lx7 LINE L1 -1322 6374 6239 2 1169 306 73 0 0 chr9 76671108 76671149 -47405023 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1169 614 273 23 6 chr9 76671179 76671356 -47404816 - L1M3 LINE L1 -2001 4139 3960 2 1169 237 65 0 0 chr9 76671858 76671889 -47404283 + (CATTT)n Simple_repeat Simple_repeat 5 35 0 2 1169 5817 76 5 2 chr9 76672211 76673000 -47403172 - L1_Mus3 LINE L1 -1 6637 5847 2 1169 411 71 0 0 chr9 76673001 76673057 -47403115 + L1_Mur2 LINE L1 4655 4710 -1167 2 1169 644 275 67 39 chr9 76673053 76673307 -47402865 - L1_Mur2 LINE L1 -1943 3937 3677 2 1169 24 32 0 0 chr9 76673581 76673612 -47402560 + AT_rich Low_complexity Low_complexity 1 31 0 2 1169 1190 238 217 17 chr9 76674553 76674967 -47401205 - RMER15 LTR ERVL -50 525 29 2 1169 402 167 0 40 chr9 76675004 76675079 -47401093 - RMER15 LTR ERVL -503 72 1 2 1169 257 320 114 8 chr9 76675109 76675187 -47400985 + B1F SINE Alu 6 97 -52 2 1169 180 0 0 0 chr9 76675187 76675207 -47400965 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1169 196 30 61 0 chr9 76675207 76675240 -47400932 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1169 257 320 114 8 chr9 76675240 76675283 -47400889 + B1F SINE Alu 98 139 -10 2 1169 191 305 0 48 chr9 76676508 76676570 -47399602 + MIRb SINE MIR 177 235 -33 2 1170 946 293 70 60 chr9 76677478 76677881 -47398291 - MER21B LTR ERV1 -15 848 442 2 1170 423 237 13 0 chr9 76678489 76678565 -47397607 + MTC LTR MaLR 186 262 -159 2 1170 44 0 0 0 chr9 76678567 76678611 -47397561 + AT_rich Low_complexity Low_complexity 1 44 0 2 1170 562 167 25 6 chr9 76678627 76678784 -47397388 + (TA)n Simple_repeat Simple_repeat 1 160 0 2 1170 556 181 23 6 chr9 76678816 76678988 -47397184 + (TA)n Simple_repeat Simple_repeat 2 176 0 2 1170 208 160 60 0 chr9 76679006 76679056 -47397116 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1170 1631 222 96 10 chr9 76679407 76679793 -47396379 + MTD LTR MaLR 1 419 0 2 1170 1164 68 0 0 chr9 76679874 76680021 -47396151 + B1_Mus2 SINE Alu 1 147 0 2 1170 201 94 0 0 chr9 76680021 76680053 -47396119 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1170 918 302 5 0 chr9 76681355 76681570 -47394602 + ID_B1 SINE B4 8 223 -1 2 1170 402 57 0 0 chr9 76681590 76681643 -47394529 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1170 279 114 0 0 chr9 76681801 76681845 -47394327 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1170 185 0 0 39 chr9 76682706 76682732 -47393440 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1170 1126 59 0 0 chr9 76682732 76682868 -47393304 - B1_Mm SINE Alu -10 137 2 2 1170 1798 226 152 28 chr9 76682876 76683479 -47392693 - RMER19A LTR ERVK -8 603 1 2 1170 1808 199 10 49 chr9 76683980 76684371 -47391801 - ORR1C1 LTR MaLR 0 378 3 2 1170 2529 184 45 17 chr9 76684375 76684912 -47391260 - ORR1C1-int LTR MaLR -2 1507 663 2 1170 584 302 25 50 chr9 76685640 76685842 -47390330 + B3A SINE B2 2 198 0 2 1170 23 0 0 0 chr9 76686200 76686223 -47389949 + AT_rich Low_complexity Low_complexity 1 23 0 2 1170 285 363 67 16 chr9 76686436 76686629 -47389543 - MER2 DNA MER2_type -21 324 122 2 1170 464 286 153 30 chr9 76686634 76686812 -47389360 + B3 SINE B2 7 198 0 2 1170 4741 63 28 21 chr9 76688134 76688802 -47387370 + L1_Mus3 LINE L1 5966 6638 0 2 1170 227 213 0 0 chr9 76688949 76688996 -47387176 + A-rich Low_complexity Low_complexity 1 47 0 2 1170 328 262 53 52 chr9 76689003 76689193 -47386979 + L1MC LINE L1 2314 2523 -3623 2 1170 423 0 0 0 chr9 76689193 76689240 -47386932 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1170 328 299 117 49 chr9 76689240 76689281 -47386891 + L1MC LINE L1 2524 2567 -3579 2 1170 486 49 0 0 chr9 76689281 76689342 -47386830 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 2 1170 328 299 117 49 chr9 76689342 76689636 -47386536 + L1MC LINE L1 2568 2871 -3275 2 1170 1417 251 143 10 chr9 76689808 76690306 -47385866 - L1MA8 LINE L1 -409 5882 5319 2 1170 747 182 76 0 chr9 76690579 76690711 -47385461 + B1_Mur2 SINE Alu 2 143 -6 2 1170 1206 279 67 38 chr9 76691288 76691679 -47384493 + MTD LTR MaLR 18 419 0 2 1170 2988 295 60 84 chr9 76691679 76692960 -47383212 + MTD-int LTR MaLR 1 1250 -8 2 1170 328 244 0 12 chr9 76692981 76693064 -47383108 + MTD LTR MaLR 16 97 -322 2 1170 240 273 47 62 chr9 76693171 76693300 -47382872 - L1M1 LINE L1 -779 5521 5395 2 1170 1122 323 82 33 chr9 76693338 76694518 -47381654 + L1M2 LINE L1 3387 4624 -1519 2 1170 300 279 13 0 chr9 76698615 76698694 -47377478 - ID4 SINE ID 0 83 4 2 1170 21 0 0 0 chr9 76699538 76699559 -47376613 + AT_rich Low_complexity Low_complexity 1 21 0 2 1170 788 295 52 38 chr9 76699607 76699896 -47376276 - Lx8 LINE L1 -74 7399 7107 2 1170 3100 195 38 67 chr9 76699892 76700798 -47375374 - L1_Rod LINE L1 -3667 2180 1302 2 1170 1308 153 112 8 chr9 76700819 76700920 -47375252 - Lx LINE L1 -1 6653 6536 2 1170 240 35 0 0 chr9 76700920 76700949 -47375223 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 2 1170 1308 153 112 8 chr9 76700949 76701097 -47375075 - Lx LINE L1 -119 6535 6378 2 1170 1947 169 44 12 chr9 76701098 76701506 -47374666 - L1Md_F3 LINE L1 -14 6570 6150 2 1170 2154 281 66 12 chr9 76701516 76702258 -47373914 - L1_Rod LINE L1 -6304 1304 523 2 1170 480 18 0 0 chr9 76702970 76703027 -47373145 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1170 1981 175 29 71 chr9 76703133 76703544 -47372628 - ORR1B1 LTR MaLR 0 394 1 2 1170 1489 217 90 18 chr9 76703652 76703995 -47372177 + ORR1D2 LTR MaLR 1 368 -2 2 1170 1193 275 105 18 chr9 76704022 76704523 -47371649 + ORR1D2-int LTR MaLR 51 621 -959 2 1170 333 0 0 0 chr9 76704665 76704702 -47371470 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1170 3439 20 5 0 chr9 76704940 76705334 -47370838 - MTA_Mm LTR MaLR 0 396 1 2 1170 27 62 0 0 chr9 76705505 76705553 -47370619 + AT_rich Low_complexity Low_complexity 1 48 0 2 1170 911 223 104 97 chr9 76705582 76706023 -47370149 - MT2B LTR ERVL -54 547 1 2 1170 863 185 0 0 chr9 76706041 76706176 -47369996 - B1_Mus1 SINE Alu -11 137 3 2 1170 544 183 32 65 chr9 76706367 76706490 -47369682 + PB1D9 SINE Alu 1 119 -1 2 1170 279 202 298 0 chr9 76706634 76706718 -47369454 + PB1D9 SINE Alu 3 111 -9 2 1170 1654 134 72 63 chr9 76707512 76707830 -47368342 - ORR1A4 LTR MaLR -8 321 1 2 1170 436 286 60 13 chr9 76707860 76708009 -47368163 - RMER15 LTR ERVL -15 560 405 2 1170 291 259 90 103 chr9 76708030 76708185 -47367987 - RMER15 LTR ERVL -128 447 295 2 1170 484 248 29 14 chr9 76708216 76708355 -47367817 - B1_Mur2 SINE Alu -7 142 2 2 1170 468 0 0 0 chr9 76708737 76708789 -47367383 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1170 276 229 114 0 chr9 76708817 76708887 -47367285 + Arthur1 DNA Tip100 313 390 -3557 2 1170 272 293 40 0 chr9 76708962 76709037 -47367135 + Arthur1 DNA Tip100 3472 3549 -398 2 1170 237 333 0 48 chr9 76709413 76709517 -47366655 - LTR81A LTR ERV1? -1148 202 104 2 1170 247 272 157 58 chr9 76710088 76710209 -47365963 - B3 SINE B2 -41 175 43 2 1170 239 54 27 0 chr9 76710237 76710274 -47365898 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2 1170 783 173 222 0 chr9 76710392 76710577 -47365595 + URR1A DNA MER1_type 1 226 0 2 1170 1663 233 50 23 chr9 76710963 76711359 -47364813 - MTB_Mm LTR MaLR 0 407 1 2 1170 1107 341 118 26 chr9 76711374 76712187 -47363985 - Lx8 LINE L1 -9 7464 6577 2 1170 1303 273 86 33 chr9 76712189 76712586 -47363586 + MTD LTR MaLR 2 419 0 2 1170 185 294 20 0 chr9 76713137 76713188 -47362984 + L2 LINE L2 2891 2942 -477 2 1170 225 0 0 0 chr9 76713273 76713298 -47362874 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1170 31 0 0 0 chr9 76714722 76714753 -47361419 + AT_rich Low_complexity Low_complexity 1 31 0 2 1170 298 393 76 17 chr9 76714894 76715184 -47360988 - LTR78 LTR ERV1 -64 1240 934 2 1170 225 0 0 0 chr9 76715219 76715244 -47360928 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1170 359 211 71 35 chr9 76715404 76715517 -47360655 - Lx8 LINE L1 -5 7468 7352 2 1170 3668 55 2 0 chr9 76715553 76716007 -47360165 - L1_Mus1 LINE L1 -2 6565 6111 2 1170 3503 58 0 0 chr9 76716007 76716441 -47359731 + L1_Mus1 LINE L1 5702 6135 -432 2 1170 861 269 104 8 chr9 76716451 76716702 -47359470 - Lx8 LINE L1 -137 7336 7062 2 1170 239 284 27 0 chr9 76716743 76716817 -47359355 - L1MC4 LINE L1 -485 7557 7482 2 1170 2491 199 65 38 chr9 76717454 76718058 -47358114 + Lx5 LINE L1 6108 7048 -2 2 1170 38 39 0 0 chr9 76718205 76718257 -47357915 + AT_rich Low_complexity Low_complexity 1 52 0 3 1170 244 352 85 0 chr9 76718264 76718500 -47357672 - L1MC4 LINE L1 -873 7169 6914 2 1170 6571 89 79 5 chr9 76718524 76719803 -47356369 - L1_Mus3 LINE L1 -7 6631 5261 3 1170 804 107 0 0 chr9 76720006 76720127 -47356045 + (GGAGA)n Simple_repeat Simple_repeat 4 124 0 3 1170 1319 17 11 33 chr9 76720127 76720311 -47355861 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1170 477 365 0 0 chr9 76720873 76721018 -47355154 + MER58A DNA MER1_type 7 151 -73 3 1170 428 219 156 0 chr9 76721120 76721216 -47354956 + PB1D9 SINE Alu 10 120 0 3 1170 596 270 58 19 chr9 76721243 76721398 -47354774 + B3 SINE B2 11 171 -45 3 1170 1683 81 18 0 chr9 76721398 76721621 -47354551 - L1_Mm LINE L1 -284 5599 5373 3 1170 244 26 0 0 chr9 76721621 76721659 -47354513 + B3 SINE B2 178 215 -1 3 1170 916 275 93 85 chr9 76721780 76722269 -47353903 - RMER20B LTR ERVK -4 512 1 3 1170 232 108 54 0 chr9 76722489 76722526 -47353646 + L1M2 LINE L1 5850 5888 -403 3 1170 334 340 28 0 chr9 76722600 76722706 -47353466 - MER58B DNA MER1_type -3 338 230 3 1170 245 300 97 113 chr9 76722712 76722836 -47353336 + B4A SINE B4 26 147 -145 3 1170 503 155 0 10 chr9 76723327 76723431 -47352741 + (CA)n Simple_repeat Simple_repeat 1 103 0 3 1170 181 123 61 15 chr9 76723531 76723597 -47352575 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1170 243 227 26 13 chr9 76723612 76723688 -47352484 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 3 1170 621 144 0 0 chr9 76723710 76723814 -47352358 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 3 1170 211 146 24 0 chr9 76724488 76724529 -47351643 + T-rich Low_complexity Low_complexity 2 43 0 3 1170 276 100 0 0 chr9 76725683 76725723 -47350449 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1170 432 0 0 0 chr9 76726232 76726280 -47349892 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1170 23 54 0 0 chr9 76727810 76727847 -47348325 + AT_rich Low_complexity Low_complexity 1 37 0 3 1170 716 94 31 0 chr9 76729265 76729393 -47346779 + (TC)n Simple_repeat Simple_repeat 1 132 0 3 1170 192 179 0 0 chr9 76729416 76729455 -47346717 + CT-rich Low_complexity Low_complexity 3 41 0 3 1170 451 274 121 0 chr9 76730339 76730463 -47345709 + B1F SINE Alu 9 147 -2 3 1170 2184 164 13 80 chr9 76730651 76730716 -47345456 - MTC LTR MaLR 0 421 369 3 1170 8083 46 1 3 chr9 76730716 76731714 -47344458 + L1Md_F2 LINE L1 5587 6582 0 3 1170 2184 164 13 80 chr9 76731714 76732099 -47344073 - MTC LTR MaLR -53 368 1 3 1170 262 250 70 70 chr9 76732335 76732421 -47343751 + PB1D10 SINE Alu 24 109 -8 3 1170 789 266 22 31 chr9 76732992 76733221 -47342951 - Lx7 LINE L1 -893 6803 6577 3 1170 1651 329 56 70 chr9 76733262 76734230 -47341942 - Lx8 LINE L1 -511 6962 6016 3 1170 4384 35 0 0 chr9 76734230 76734747 -47341425 - L1Md_T LINE L1 0 6582 6066 3 1170 2002 253 44 37 chr9 76734747 76735529 -47340643 - Lx8 LINE L1 -1458 6015 5233 3 1170 720 307 123 41 chr9 76735598 76736453 -47339719 - L1M3 LINE L1 -1747 4393 3454 3 1170 5969 52 0 1 chr9 76736453 76737192 -47338980 + L1Md_F2 LINE L1 5835 6572 -10 3 1170 630 304 144 38 chr9 76737192 76737567 -47338605 - L1M3 LINE L1 -2690 3453 3040 3 1170 341 355 107 8 chr9 76737641 76737763 -47338409 - RSINE1 SINE B4 -28 137 4 3 1170 615 128 0 0 chr9 76738009 76738118 -47338054 + (TG)n Simple_repeat Simple_repeat 2 110 0 3 1170 232 363 62 0 chr9 76739059 76739172 -47337000 + MER5A DNA MER1_type 51 170 -19 3 1170 1162 43 0 0 chr9 76741094 76741232 -47334940 + B1_Mm SINE Alu 1 138 -9 3 1170 324 83 0 0 chr9 76741232 76741280 -47334892 + (CAAT)n Simple_repeat Simple_repeat 2 49 0 3 1170 1143 80 0 24 chr9 76741291 76741457 -47334715 + L1_Mur2 LINE L1 5577 5738 -139 3 1170 439 335 123 66 chr9 76741457 76741901 -47334271 - MLT1E3 LTR MaLR -19 605 137 3 1170 192 77 0 0 chr9 76742679 76742705 -47333467 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3 1170 1218 186 64 62 chr9 76743058 76743318 -47332854 - RMER19B LTR ERVK -159 743 397 3 1170 1712 299 59 16 chr9 76743651 76744481 -47331691 - L1_Mur3 LINE L1 -13 5867 5002 3 1170 1167 193 56 143 chr9 76744468 76744916 -47331256 + L1_Mur3 LINE L1 4055 4463 -1417 3 1170 759 275 31 58 chr9 76745306 76745565 -47330607 + Lx7 LINE L1 7087 7338 -358 3 1170 405 0 0 0 chr9 76745565 76745610 -47330562 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1170 22 0 0 0 chr9 76746411 76746433 -47329739 + AT_rich Low_complexity Low_complexity 1 22 0 3 1170 1855 314 149 18 chr9 76746440 76747524 -47328648 - Lx8 LINE L1 0 7473 6247 3 1170 2811 155 26 74 chr9 76747524 76748054 -47328118 - RMER19C LTR ERVK 0 611 107 3 1170 255 125 0 0 chr9 76748761 76748801 -47327371 + (ATG)n Simple_repeat Simple_repeat 3 42 0 3 1170 5955 55 3 1 chr9 76750115 76750866 -47325306 - L1_Mus1 LINE L1 0 6567 5816 3 1170 262 217 22 0 chr9 76750967 76751045 -47325127 + CT-rich Low_complexity Low_complexity 17 96 0 3 1170 1138 97 6 6 chr9 76751045 76751221 -47324951 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 3 1170 262 217 22 0 chr9 76751221 76751234 -47324938 + polypyrimidine Low_complexity Low_complexity 4 16 0 3 1170 247 326 34 23 chr9 76751258 76751346 -47324826 - PB1D9 SINE Alu -31 89 1 3 1170 2280 104 11 3 chr9 76751447 76751794 -47324378 - L1_Mus3 LINE L1 0 6638 6289 3 1170 451 318 53 0 chr9 76752520 76752652 -47323520 + ID_B1 SINE B4 84 222 -2 3 1170 389 169 0 12 chr9 76752656 76752740 -47323432 + GA-rich Low_complexity Low_complexity 3 85 0 3 1170 454 250 34 0 chr9 76754563 76754651 -47321521 - B3A SINE B2 -102 96 6 3 1170 522 0 0 0 chr9 76754823 76754881 -47321291 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1170 426 53 0 0 chr9 76754881 76754937 -47321235 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1170 384 207 89 98 chr9 76754937 76754977 -47321195 + MT2B LTR ERVL 119 157 -444 3 1170 625 93 0 0 chr9 76754977 76755063 -47321109 + B1_Mus1 SINE Alu 2 87 -61 3 1170 288 111 0 0 chr9 76755069 76755123 -47321049 + (CTAA)n Simple_repeat Simple_repeat 3 56 0 3 1170 1149 217 146 8 chr9 76755150 76755410 -47320762 - Lx7 LINE L1 -972 6724 6429 3 1170 1232 201 48 6 chr9 76755831 76756147 -47320025 + L1_Mur3 LINE L1 1395 1723 -4157 3 1170 24 0 0 0 chr9 76756158 76756182 -47319990 + AT_rich Low_complexity Low_complexity 1 24 0 3 1170 441 333 55 5 chr9 76756657 76756859 -47319313 - MER2 DNA MER2_type -36 309 98 3 1170 1425 305 91 27 chr9 76757002 76757098 -47319074 - Lx9 LINE L1 -199 7445 7344 3 1170 450 0 0 0 chr9 76757098 76757148 -47319024 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1170 1425 305 91 27 chr9 76757148 76757677 -47318495 - Lx9 LINE L1 -301 7343 6781 3 1170 640 53 42 0 chr9 76758234 76758329 -47317843 + (GAAAA)n Simple_repeat Simple_repeat 2 100 0 3 1170 225 0 0 0 chr9 76760136 76760161 -47316011 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1170 694 302 53 19 chr9 76760369 76760578 -47315594 + B4A SINE B4 2 217 -75 3 1170 644 93 10 0 chr9 76760622 76760719 -47315453 + (TC)n Simple_repeat Simple_repeat 1 98 0 3 1170 3943 254 86 7 chr9 76761539 76762558 -47313614 - Lx6 LINE L1 -173 7287 6266 3 1170 278 243 13 63 chr9 76764066 76764145 -47312027 + ID4 SINE ID 6 80 -3 3 1170 906 209 68 16 chr9 76764179 76764360 -47311812 + B3 SINE B2 8 200 -16 3 1170 462 36 0 0 chr9 76764360 76764416 -47311756 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 3 1170 208 70 47 0 chr9 76764440 76764483 -47311689 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1170 22 56 0 0 chr9 76764790 76764826 -47311346 + AT_rich Low_complexity Low_complexity 1 36 0 3 1170 4663 66 2 3 chr9 76764933 76765528 -47310644 - L1_Mus2 LINE L1 0 6566 5973 3 1170 309 327 164 0 chr9 76765671 76765830 -47310342 + B4 SINE B4 63 247 -45 3 1170 230 291 0 0 chr9 76765975 76766030 -47310142 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1170 23 0 0 0 chr9 76766604 76766627 -47309545 + AT_rich Low_complexity Low_complexity 1 23 0 3 1170 7913 63 1 4 chr9 76766627 76767693 -47308479 - L1_Mus1 LINE L1 0 6567 5512 3 1170 398 101 2 0 chr9 76767648 76767708 -47308464 + L1_Mur1 LINE L1 5493 5553 -330 3 1170 324 0 0 0 chr9 76769849 76769885 -47306287 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3 1170 1389 61 0 0 chr9 76769885 76770065 -47306107 + (CAAAG)n Simple_repeat Simple_repeat 1 180 0 3 1170 1760 267 167 30 chr9 76770898 76771569 -47304603 + RMER1C Other Other 578 1340 -2 3 1170 506 302 35 38 chr9 76772113 76772430 -47303742 + L1MA4A LINE L1 3480 3795 -2348 3 1170 1217 186 5 0 chr9 76772568 76772767 -47303405 + URR1A DNA MER1_type 2 201 -25 3 1170 1145 325 40 30 chr9 76772798 76773227 -47302945 + L1MA4A LINE L1 3997 4432 -1711 3 1170 2018 99 7 0 chr9 76773227 76773510 -47302662 + L1_Mus1 LINE L1 6283 6567 0 3 1170 1145 325 40 30 chr9 76773510 76773525 -47302647 + L1MA4A LINE L1 4433 4440 -1703 3 1170 210 37 0 0 chr9 76773525 76773552 -47302620 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1170 1145 325 40 30 chr9 76773552 76773846 -47302326 + L1MA4A LINE L1 4441 4744 -1399 3 1170 1553 273 28 2 chr9 76773848 76774248 -47301924 - MTD LTR MaLR 0 419 10 3 1170 2095 299 67 60 chr9 76774252 76774364 -47301808 - MTD-int LTR MaLR -2 1256 1142 3 1170 4606 64 25 13 chr9 76774364 76774994 -47301178 + L1Md_F2 LINE L1 5942 6579 -3 3 1170 2095 299 67 60 chr9 76774994 76775749 -47300423 - MTD-int LTR MaLR -117 1141 383 3 1170 569 171 26 43 chr9 76775758 76775874 -47300298 + RMER6C LTR ERVK 1 114 -576 3 1170 529 303 32 82 chr9 76775874 76776438 -47299734 + L1MA4A LINE L1 5371 5936 -367 3 1170 24 32 0 0 chr9 76776757 76776788 -47299384 + AT_rich Low_complexity Low_complexity 1 31 0 3 1170 1037 130 34 6 chr9 76778874 76779052 -47297120 + RLTR17 LTR ERVK 1 183 -509 3 1170 1126 163 68 26 chr9 76779047 76779388 -47296784 + RLTR17 LTR ERVK 289 692 0 3 1170 527 53 0 13 chr9 76779392 76779468 -47296704 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1170 25 31 0 0 chr9 76780781 76780813 -47295359 + AT_rich Low_complexity Low_complexity 1 32 0 3 1170 277 402 53 28 chr9 76781225 76781509 -47294663 - MLT1N2 LTR MaLR -216 346 56 3 1170 236 196 0 0 chr9 76781654 76781705 -47294467 - Lx9 LINE L1 -5 7639 7589 3 1170 429 20 0 0 chr9 76781989 76782039 -47294133 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 4 1170 432 322 26 52 chr9 76782128 76782321 -47293851 - MER5A DNA MER1_type 0 189 2 4 1170 28 0 0 0 chr9 76782608 76782636 -47293536 + AT_rich Low_complexity Low_complexity 1 28 0 4 1170 19272 178 35 89 chr9 76783140 76784196 -47291976 + Lx5 LINE L1 894 2063 -3814 4 1170 432 0 0 0 chr9 76784196 76784244 -47291928 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1170 19272 162 40 113 chr9 76784244 76784812 -47291360 + Lx5 LINE L1 2064 2356 -3521 4 1170 495 48 0 0 chr9 76784812 76784874 -47291298 + (CCA)n Simple_repeat Simple_repeat 1 62 0 4 1170 19272 162 40 113 chr9 76784874 76785522 -47290650 + Lx5 LINE L1 2357 2792 -3085 4 1170 222 37 0 0 chr9 76785522 76785549 -47290623 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1170 19272 173 39 99 chr9 76785549 76789113 -47287059 + Lx5 LINE L1 2793 6437 -613 4 1170 672 13 0 0 chr9 76789113 76789190 -47286982 + (GA)n Simple_repeat Simple_repeat 1 77 0 4 1170 6405 232 33 19 chr9 76789190 76789800 -47286372 + Lx5 LINE L1 6438 7050 0 4 1170 604 233 22 15 chr9 76791105 76791240 -47284932 + B1_Mur4 SINE Alu 5 140 -10 4 1170 387 0 0 0 chr9 76791246 76791289 -47284883 + (TAA)n Simple_repeat Simple_repeat 1 43 0 4 1170 229 340 35 0 chr9 76793011 76793152 -47283020 + L1M3 LINE L1 2869 3014 -3126 4 1170 1431 178 296 3 chr9 76793164 76793465 -47282707 + MTC LTR MaLR 33 421 0 4 1170 7287 155 130 43 chr9 76795801 76796863 -47279309 + RLTR22_Mus LTR ERVK 1 1079 -729 4 1170 5885 57 3 5 chr9 76796863 76797616 -47278556 - L1Md_F2 LINE L1 0 6582 5832 4 1170 7287 155 130 43 chr9 76797616 76798217 -47277955 + RLTR22_Mus LTR ERVK 1080 1808 0 4 1170 188 303 12 62 chr9 76798397 76798478 -47277694 - L3b LINE CR1 -77 405 329 4 1170 378 0 0 0 chr9 76799323 76799365 -47276807 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1170 974 302 40 51 chr9 76800097 76800491 -47275681 + MTE2b LTR MaLR 18 404 -15 4 1170 218 333 102 20 chr9 76800880 76800978 -47275194 - ID_B1 SINE B4 -37 187 82 4 1170 1147 194 40 13 chr9 76802001 76802226 -47273946 + MT2A LTR ERVL 1 231 -302 4 1170 1272 64 17 0 chr9 76802227 76802399 -47273773 - L1_Mus2 LINE L1 0 6566 6392 4 1170 926 270 69 54 chr9 76802495 76803195 -47272977 + L1M2 LINE L1 3914 4632 -1508 4 1170 306 0 0 0 chr9 76803239 76803273 -47272899 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1170 1228 244 158 15 chr9 76803529 76803990 -47272182 + Lx6 LINE L1 6541 7434 -26 4 1170 25 31 0 0 chr9 76804825 76804857 -47271315 + AT_rich Low_complexity Low_complexity 1 32 0 4 1170 1492 224 38 19 chr9 76804900 76805214 -47270958 + Lx6 LINE L1 7140 7459 -1 4 1170 969 315 105 40 chr9 76805362 76805884 -47270288 - LTR68 LTR ERV1 -2 738 183 4 1170 2019 125 26 66 chr9 76806108 76806486 -47269686 + Lx LINE L1 6292 6654 0 4 1170 303 355 0 11 chr9 76806509 76806603 -47269569 + B4 SINE B4 44 136 -156 4 1170 234 156 0 0 chr9 76806722 76806767 -47269405 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1170 496 221 400 37 chr9 76807146 76807398 -47268774 + ORR1C2 LTR MaLR 10 476 -894 4 1170 415 259 34 92 chr9 76807375 76807417 -47268755 + ORR1C2-int LTR MaLR 397 442 -1067 4 1170 630 37 0 0 chr9 76807417 76807498 -47268674 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 1170 415 259 34 92 chr9 76807498 76807522 -47268650 + ORR1C2-int LTR MaLR 443 460 -1049 4 1170 1140 74 0 7 chr9 76807522 76807660 -47268512 + B1_Mus1 SINE Alu 1 138 -10 4 1170 699 75 0 0 chr9 76807660 76807754 -47268418 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 4 146 3582 235 62 17 chr9 76807764 76808633 -47267539 + ORR1C2-int LTR MaLR 461 1369 -1 4 1171 741 270 252 7 chr9 76808634 76808936 -47267236 + ORR1C2 LTR MaLR 1 376 -8 4 1171 477 0 0 0 chr9 76808936 76808989 -47267183 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1171 363 60 0 0 chr9 76808989 76809039 -47267133 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1171 342 324 17 35 chr9 76809041 76809156 -47267016 + RSINE1 SINE B4 15 127 -38 4 1171 42 48 0 0 chr9 76809205 76809268 -47266904 + AT_rich Low_complexity Low_complexity 1 63 0 4 1171 384 326 7 68 chr9 76809383 76809531 -47266641 - ID_B1 SINE B4 -3 221 83 4 1171 273 75 18 36 chr9 76809630 76809685 -47266487 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1171 234 91 0 0 chr9 76810397 76810430 -47265742 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 4 1171 485 203 92 17 chr9 76810430 76810550 -47265622 - Lx6 LINE L1 -241 7219 7091 4 1171 218 373 125 16 chr9 76810557 76810685 -47265487 - B1F1 SINE Alu -3 146 5 4 1171 246 286 25 82 chr9 76811033 76811155 -47265017 + RMER15 LTR ERVL 4 118 -457 4 1171 738 329 100 7 chr9 76811184 76811475 -47264697 + RMER15 LTR ERVL 258 575 0 4 1171 303 173 0 0 chr9 76811862 76811943 -47264229 + GA-rich Low_complexity Low_complexity 1 81 0 4 1171 813 142 25 6 chr9 76812042 76812205 -47263967 + CT-rich Low_complexity Low_complexity 3 168 0 4 1171 477 0 0 0 chr9 76812488 76812541 -47263631 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1171 441 248 25 78 chr9 76814363 76814532 -47261640 + RLTR17 LTR ERVK 57 217 -475 4 1171 672 306 18 18 chr9 76814562 76814782 -47261390 + RLTR17 LTR ERVK 316 535 -157 4 1171 310 257 16 114 chr9 76815176 76815299 -47260873 + L1VL1 LINE L1 290 400 -6022 4 1171 495 240 15 8 chr9 76815589 76815719 -47260453 + L1_Mus1 LINE L1 675 805 -5811 4 1171 24277 126 7 73 chr9 76815725 76818218 -47257954 + L1_Mus1 LINE L1 725 3131 -2752 4 1171 207 0 0 0 chr9 76818218 76818241 -47257931 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1171 24277 114 8 53 chr9 76818241 76820441 -47255731 + L1_Mus1 LINE L1 3132 5142 -741 4 1171 12112 87 4 5 chr9 76820415 76822782 -47253390 + L1_Mus1 LINE L1 4202 6567 0 4 1171 466 228 47 8 chr9 76822794 76822922 -47253250 - L1MA6 LINE L1 -13 6287 6155 4 1171 1214 156 32 9 chr9 76822938 76823158 -47253014 - URR1B DNA MER1_type 0 225 1 4 1171 259 328 86 16 chr9 76823452 76823540 -47252632 + Lx8 LINE L1 7270 7357 -116 4 1171 3025 85 2 0 chr9 76823540 76823938 -47252234 + MTB LTR MaLR 2 400 0 4 1171 259 328 86 16 chr9 76823938 76824035 -47252137 + Lx8 LINE L1 7358 7467 -6 4 1171 22 0 0 0 chr9 76824040 76824062 -47252110 + AT_rich Low_complexity Low_complexity 1 22 0 4 1171 1131 65 0 0 chr9 76824255 76824394 -47251778 + B1_Mus2 SINE Alu 3 141 -6 4 1171 192 40 0 0 chr9 76824397 76824422 -47251750 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1171 285 284 48 24 chr9 76825825 76825908 -47250264 - B3 SINE B2 -54 162 78 4 1171 220 196 39 0 chr9 76826060 76826111 -47250061 + GA-rich Low_complexity Low_complexity 3 55 0 4 1171 876 108 0 0 chr9 76826111 76826241 -47249931 + (GA)n Simple_repeat Simple_repeat 2 131 0 4 1171 290 211 37 73 chr9 76826705 76826787 -47249385 - RLTR40 LTR ERVK -48 769 691 4 1171 541 314 6 0 chr9 76827047 76827222 -47248950 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 1171 205 333 40 0 chr9 76827736 76827811 -47248361 + L2b LINE L2 3289 3366 -9 4 1171 497 230 162 38 chr9 76827920 76828105 -47248067 - B3 SINE B2 -3 213 6 4 1171 558 319 6 63 chr9 76828128 76828302 -47247870 - B3A SINE B2 -26 172 9 4 1171 305 164 0 14 chr9 76828309 76828383 -47247789 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1171 301 143 0 20 chr9 76828391 76828441 -47247731 + HAL1-3A_ME LINE L1 1979 2027 -831 4 1171 540 234 166 46 chr9 76829225 76829400 -47246772 - B3A SINE B2 0 198 3 4 1171 1367 64 0 0 chr9 76829787 76829960 -47246212 - L1_Mus4 LINE L1 -493 6143 5971 4 1171 5276 164 7 1 chr9 76829959 76830862 -47245310 + L1_Mm LINE L1 4782 5689 -194 4 1171 31 58 0 0 chr9 76830862 76830914 -47245258 + AT_rich Low_complexity Low_complexity 1 52 0 4 1171 2337 111 70 21 chr9 76830915 76831300 -47244872 - Lx2 LINE L1 -2 6995 6592 4 1171 17733 138 42 15 chr9 76831439 76835202 -47240970 + L1_Mus3 LINE L1 429 4278 -1605 4 1171 380 107 0 0 chr9 76835214 76835270 -47240902 + L1_Mus3 LINE L1 4371 4426 -1457 4 1171 7082 82 67 1 chr9 76835267 76836351 -47239821 + L1_Mus3 LINE L1 5478 6633 -5 4 1171 579 29 0 0 chr9 76836841 76836910 -47239262 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 4 1171 23 0 0 0 chr9 76837074 76837097 -47239075 + AT_rich Low_complexity Low_complexity 1 23 0 4 1171 370 241 116 7 chr9 76837238 76837376 -47238796 - Lx5 LINE L1 0 7050 6898 4 1171 271 324 0 14 chr9 76838519 76838588 -47237584 - tRNA-Ala-GCA tRNA tRNA -1 74 7 4 1171 279 384 0 0 chr9 76838526 76838599 -47237573 - ID2 SINE ID -9 74 2 4 1171 337 344 103 82 chr9 76839765 76840132 -47236040 - MTEa LTR MaLR 0 379 5 4 1171 200 393 28 34 chr9 76841803 76841982 -47234190 - L2a LINE L2 -193 3233 3056 4 1171 540 352 117 33 chr9 76842151 76842352 -47233820 - L2a LINE L2 -697 2722 2500 4 1171 180 0 0 0 chr9 76842352 76842372 -47233800 + (CTG)n Simple_repeat Simple_repeat 1 20 0 4 1171 540 352 117 33 chr9 76842372 76842690 -47233482 - L2a LINE L2 -920 2499 2161 4 1171 180 301 0 117 chr9 76842722 76842850 -47233322 - L2a LINE L2 -1378 2041 1929 4 1171 541 162 8 120 chr9 76842965 76843098 -47233074 + B1_Mus1 SINE Alu 31 148 0 4 1171 192 274 32 0 chr9 76843340 76843402 -47232770 - L2a LINE L2 -1889 1530 1467 4 1171 662 311 66 71 chr9 76843617 76844042 -47232130 + MT2A LTR ERVL 3 425 -108 4 1171 214 268 57 23 chr9 76844327 76844415 -47231757 - L2a LINE L2 -2384 1035 945 4 1171 201 133 0 0 chr9 76844534 76844564 -47231608 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 4 1171 420 20 0 0 chr9 76844621 76844670 -47231502 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1171 204 67 0 0 chr9 76845274 76845304 -47230868 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1171 23 0 0 0 chr9 76847062 76847085 -47229087 + AT_rich Low_complexity Low_complexity 1 23 0 4 1171 329 62 21 0 chr9 76848126 76848174 -47227998 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 4 1171 533 263 60 8 chr9 76849014 76849148 -47227024 + RSINE1 SINE B4 4 144 -21 4 1171 432 86 0 0 chr9 76849160 76849230 -47226942 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1171 29 0 0 0 chr9 76849931 76849960 -47226212 + AT_rich Low_complexity Low_complexity 1 29 0 4 1171 511 300 51 32 chr9 76850177 76850490 -47225682 + Lx9 LINE L1 7288 7606 -38 4 1171 835 164 0 0 chr9 76850562 76850690 -47225482 - B3 SINE B2 -87 129 2 4 1171 495 332 119 12 chr9 76850734 76850759 -47225413 + MLT1A LTR MaLR 62 88 -286 4 1171 5006 68 3 1 chr9 76850759 76851411 -47224761 + L1Md_F2 LINE L1 5929 6581 -1 4 1171 495 332 119 12 chr9 76851411 76851638 -47224534 + MLT1A LTR MaLR 89 340 -34 4 1171 558 312 132 0 chr9 76851805 76852039 -47224133 - B4A SINE B4 -22 270 6 4 1171 22 35 0 0 chr9 76852065 76852094 -47224078 + AT_rich Low_complexity Low_complexity 1 29 0 4 1171 592 304 119 45 chr9 76852141 76852627 -47223545 - Lx9 LINE L1 -55 7589 7068 4 1171 26 30 0 0 chr9 76852695 76852728 -47223444 + AT_rich Low_complexity Low_complexity 1 33 0 4 1171 228 163 0 0 chr9 76854163 76854206 -47221966 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1171 530 307 0 0 chr9 76854291 76854418 -47221754 + ORR1D2 LTR MaLR 9 135 -235 5 1171 1990 146 39 0 chr9 76854680 76855010 -47221162 + Lx2B LINE L1 6650 6992 -8 5 1171 21 0 0 0 chr9 76855104 76855125 -47221047 + AT_rich Low_complexity Low_complexity 1 21 0 5 1171 29 47 0 0 chr9 76856398 76856441 -47219731 + AT_rich Low_complexity Low_complexity 1 43 0 5 1171 1134 82 0 0 chr9 76857690 76857837 -47218335 + B1_Mm SINE Alu 1 147 0 5 1171 510 17 0 0 chr9 76857839 76857898 -47218274 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1171 33673 74 6 8 chr9 76858022 76863391 -47212781 + L1Md_F3 LINE L1 232 5585 -298 5 1171 8151 41 4 0 chr9 76863392 76864372 -47211800 + L1Md_F3 LINE L1 5587 6570 -14 5 1171 1068 53 29 12 chr9 76864764 76864934 -47211238 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 5 1171 929 108 0 0 chr9 76864934 76865064 -47211108 - B1_Mm SINE Alu -12 135 6 5 1171 857 79 71 0 chr9 76865411 76865538 -47210634 + B1_Mm SINE Alu 12 147 0 5 1171 24 67 0 0 chr9 76866081 76866126 -47210046 + AT_rich Low_complexity Low_complexity 1 45 0 5 1171 243 0 0 0 chr9 76868180 76868207 -47207965 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1171 3798 41 0 4 chr9 76868571 76869036 -47207136 - L1Md_F3 LINE L1 -3 6581 6119 5 1171 27 0 0 0 chr9 76869057 76869084 -47207088 + AT_rich Low_complexity Low_complexity 1 27 0 5 1171 1332 38 0 0 chr9 76869084 76869243 -47206929 + L1Md_F3 LINE L1 6005 6163 -421 5 1171 861 294 10 0 chr9 76869451 76869655 -47206517 - B3 SINE B2 -6 210 5 5 1171 210 254 34 0 chr9 76870352 76870411 -47205761 - ID SINE ID -162 62 2 5 1171 227 300 119 10 chr9 76871112 76871213 -47204959 - RMER1C Other Other -4 1338 1227 5 1171 1132 243 135 17 chr9 76871135 76871491 -47204681 - Lx8 LINE L1 -5 7468 7071 5 1171 590 0 14 0 chr9 76872622 76872692 -47203480 + (GAGAA)n Simple_repeat Simple_repeat 5 75 0 5 1171 212 343 65 29 chr9 76873052 76873190 -47202982 + MIRb SINE MIR 126 268 0 5 1171 268 200 0 65 chr9 76874221 76874328 -47201844 + (TTAA)n Simple_repeat Simple_repeat 4 103 0 5 1171 1112 141 0 31 chr9 76875547 76875738 -47200434 + B2_Mm2 SINE B2 8 192 -3 5 1171 416 262 146 0 chr9 76876253 76876356 -47199816 + B1_Mur1 SINE Alu 12 129 -20 5 1171 498 221 69 26 chr9 76876359 76876475 -47199697 + B3A SINE B2 5 125 -73 5 1171 355 319 96 0 chr9 76877158 76877293 -47198879 - B1F1 SINE Alu -1 148 1 5 1171 286 241 35 44 chr9 76877563 76877676 -47198496 + PB1D10 SINE Alu 5 116 -1 5 1171 22 0 0 0 chr9 76877813 76877835 -47198337 + AT_rich Low_complexity Low_complexity 1 22 0 5 1171 406 312 0 0 chr9 76878470 76878579 -47197593 + RSINE1 SINE B4 4 112 -53 5 1171 21 57 0 0 chr9 76879825 76879860 -47196312 + AT_rich Low_complexity Low_complexity 1 35 0 5 1171 919 273 96 15 chr9 76880539 76880874 -47195298 + Lx7 LINE L1 6977 7338 -358 5 1171 229 275 77 0 chr9 76881452 76881543 -47194629 + Charlie24 DNA MER1_type 2071 2168 -282 5 1171 1184 233 113 32 chr9 76882119 76882485 -47193687 + MTD LTR MaLR 3 408 -13 5 1171 875 51 8 0 chr9 76882792 76882909 -47193263 + (GA)n Simple_repeat Simple_repeat 1 118 0 5 1171 807 321 72 104 chr9 76883303 76883985 -47192187 + LTR82A LTR ERVL 4 671 -201 5 1171 1655 116 8 4 chr9 76883985 76884245 -47191927 - L1_Mus4 LINE L1 0 6636 6376 5 1171 807 321 72 104 chr9 76884245 76884343 -47191829 + LTR82A LTR ERVL 672 759 -113 5 1171 365 111 32 0 chr9 76884438 76884501 -47191671 + (TATG)n Simple_repeat Simple_repeat 2 66 0 5 1171 435 286 7 50 chr9 76885214 76885354 -47190818 + B1F SINE Alu 1 134 -15 5 1171 320 326 0 0 chr9 76885437 76885529 -47190643 + PB1 SINE Alu 28 119 -8 5 1171 404 279 54 7 chr9 76885976 76886124 -47190048 + Lx9 LINE L1 7310 7464 -180 5 1171 505 0 31 0 chr9 76886124 76886189 -47189983 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 5 1171 321 218 23 0 chr9 76886199 76886286 -47189886 + Lx9 LINE L1 7520 7608 -36 5 1171 2507 227 70 84 chr9 76886455 76887239 -47188933 + Lx9 LINE L1 6871 7643 -1 5 1171 393 206 15 0 chr9 76888566 76888634 -47187538 + ID4_ SINE ID 15 83 0 5 1171 550 293 104 7 chr9 76888787 76889086 -47187086 + L1MA6 LINE L1 5972 6299 -1 5 1171 842 314 62 6 chr9 76889570 76889890 -47186282 + Lx8 LINE L1 6990 7327 -146 5 1171 26 0 0 0 chr9 76890156 76890182 -47185990 + AT_rich Low_complexity Low_complexity 1 26 0 5 1171 214 233 0 32 chr9 76890402 76890464 -47185708 + (CAGAGA)n Simple_repeat Simple_repeat 5 64 0 5 1171 21 57 0 0 chr9 76890523 76890558 -47185614 + AT_rich Low_complexity Low_complexity 1 35 0 5 1171 248 343 122 14 chr9 76891113 76891252 -47184920 - MER45A DNA Tip100 -10 168 15 5 1171 655 335 38 14 chr9 76891674 76891886 -47184286 - B4 SINE B4 -74 218 2 5 1171 24 67 0 0 chr9 76892167 76892212 -47183960 + AT_rich Low_complexity Low_complexity 1 45 0 5 1171 888 287 12 12 chr9 76892551 76892777 -47183395 - ID_B1 SINE B4 -60 232 6 5 1171 1241 26 19 0 chr9 76892946 76893101 -47183071 + (GGAGA)n Simple_repeat Simple_repeat 1 158 0 5 1171 21 57 0 0 chr9 76893713 76893748 -47182424 + AT_rich Low_complexity Low_complexity 1 35 0 5 1171 529 223 23 8 chr9 76894850 76894981 -47181191 - L1M2 LINE L1 -714 5577 5445 5 1171 414 0 0 0 chr9 76895290 76895336 -47180836 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1171 309 333 76 28 chr9 76895739 76895884 -47180288 + MER20 DNA MER1_type 1 152 -67 5 1171 24 32 0 0 chr9 76898558 76898589 -47177583 + AT_rich Low_complexity Low_complexity 1 31 0 5 1171 4885 229 48 6 chr9 76898760 76899978 -47176194 + Lx9 LINE L1 6367 7636 -8 5 1171 388 174 268 6 chr9 76900002 76900181 -47175991 + Lx9 LINE L1 7413 7638 -6 5 1171 507 73 0 0 chr9 76900198 76900266 -47175906 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 5 1171 297 354 10 10 chr9 76900268 76900368 -47175804 - PB1D10 SINE Alu -14 103 4 5 1171 280 303 13 0 chr9 76900751 76900827 -47175345 - L2 LINE L2 -1057 2362 2286 5 1171 265 396 58 0 chr9 76901680 76901819 -47174353 - L2b LINE L2 -14 3361 3215 5 1171 504 0 0 0 chr9 76902966 76903022 -47173150 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1171 324 0 0 0 chr9 76903022 76903057 -47173115 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1171 687 148 23 29 chr9 76903110 76903284 -47172888 + GA-rich Low_complexity Low_complexity 1 173 0 5 1171 192 152 0 0 chr9 76903329 76903362 -47172810 + A-rich Low_complexity Low_complexity 3 35 0 5 1171 477 47 0 0 chr9 76904357 76904421 -47171751 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1171 3851 94 9 2 chr9 76905589 76906132 -47170040 + L1_Mus3 LINE L1 6091 6637 -1 5 1171 1926 100 17 14 chr9 76906147 76906440 -47169732 + Lx LINE L1 6359 6652 -2 5 1171 712 258 78 0 chr9 76906477 76906644 -47169528 + B3 SINE B2 1 180 -36 5 1171 3584 161 15 44 chr9 76906660 76907382 -47168790 + Lx4B LINE L1 5088 5788 -89 5 1171 2250 131 18 8 chr9 76907720 76908104 -47168068 + Lx4B LINE L1 5791 6178 -880 5 1171 2237 236 44 17 chr9 76908104 76908625 -47167547 + RLTR20B3 LTR ERVK 1 535 -42 5 1171 2457 158 16 9 chr9 76908650 76909084 -47167088 + Lx4B LINE L1 6173 6609 -449 5 1171 21147 160 16 37 chr9 76909076 76911080 -47165092 - Lx LINE L1 0 6654 4623 5 1171 213 39 0 0 chr9 76911080 76911106 -47165066 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1171 21147 168 17 61 chr9 76911106 76912045 -47164127 - Lx LINE L1 -1255 4622 3702 5 1171 1073 68 20 0 chr9 76912045 76912193 -47163979 - L1_Mus2 LINE L1 0 6566 6416 5 1171 21147 155 19 48 chr9 76912193 76915529 -47160643 - Lx LINE L1 -2176 3701 568 5 1171 242 65 0 0 chr9 76915530 76915561 -47160611 - Lx LINE L1 -3323 592 562 5 1171 228 121 0 0 chr9 76915532 76915565 -47160607 - L1VL4 LINE L1 -6260 42 10 5 1171 2408 160 33 28 chr9 76915566 76916023 -47160149 + Lx4B LINE L1 6596 7054 -4 5 1171 22 0 0 0 chr9 76916818 76916840 -47159332 + AT_rich Low_complexity Low_complexity 1 22 0 5 1171 494 315 9 51 chr9 76917608 76917841 -47158331 - Lx8 LINE L1 -1273 6423 6196 5 1171 512 181 14 27 chr9 76917841 76917989 -47158183 + (TAGA)n Simple_repeat Simple_repeat 2 147 0 5 1171 351 239 11 0 chr9 76918003 76918091 -47158081 + Lx8 LINE L1 6457 6545 -928 5 1171 953 308 70 25 chr9 76918111 76918572 -47157600 + Lx8 LINE L1 6865 7348 -125 5 1171 339 25 0 0 chr9 76918572 76918612 -47157560 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1171 953 308 70 25 chr9 76918612 76918706 -47157466 + Lx8 LINE L1 7349 7444 -29 5 1171 31 0 0 0 chr9 76918719 76918750 -47157422 + AT_rich Low_complexity Low_complexity 1 31 0 5 1171 23 33 0 0 chr9 76919174 76919204 -47156968 + AT_rich Low_complexity Low_complexity 1 30 0 5 1171 285 151 0 0 chr9 76919277 76919330 -47156842 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1171 462 36 0 0 chr9 76919331 76919387 -47156785 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1171 369 0 0 0 chr9 76920215 76920256 -47155916 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1171 733 311 62 13 chr9 76920404 76920713 -47155459 - RMER15-int LTR ERVL -3518 1481 1158 5 1171 304 246 70 0 chr9 76920736 76920850 -47155322 + L1M3 LINE L1 5050 5171 -969 5 1171 641 294 105 13 chr9 76920929 76921301 -47154871 + L1MB7 LINE L1 5751 6156 -28 5 1171 1334 261 11 8 chr9 76921678 76922029 -47154143 + Lx6 LINE L1 7083 7434 -26 5 1171 927 291 75 8 chr9 76922047 76922658 -47153514 - L1M3 LINE L1 -1215 4925 4274 5 1171 535 338 31 6 chr9 76922803 76922964 -47153208 - RSINE1 SINE B4 0 165 1 5 1171 29 60 0 0 chr9 76922973 76923023 -47153149 + AT_rich Low_complexity Low_complexity 1 50 0 5 1171 1089 271 73 110 chr9 76923023 76924074 -47152098 - L1M3 LINE L1 -1916 4224 3213 5 1171 10679 89 11 3 chr9 76924071 76926406 -47149766 - L1_Mus1 LINE L1 -3 6564 4208 5 1171 5247 105 8 32 chr9 76926404 76927033 -47149139 - L1_Mus1 LINE L1 -3584 2299 1693 5 1171 3857 56 44 8 chr9 76927033 76927534 -47148638 - L1Md_F2 LINE L1 -3 6579 6061 5 1171 5247 105 8 32 chr9 76927534 76927837 -47148335 - L1_Mus1 LINE L1 -4191 1692 1390 5 1171 2376 63 119 11 chr9 76927837 76928189 -47147983 - RLTR10 LTR ERVK 0 390 1 5 1171 8380 21 0 0 chr9 76928191 76929186 -47146986 - RLTR10-int LTR ERVK -3 1984 990 5 1171 297 281 0 0 chr9 76929268 76929364 -47146808 - RLTR10-int LTR ERVK -5987 1594 1499 5 1171 5397 41 10 11 chr9 76929462 76930160 -47146012 - RLTR10-int LTR ERVK -989 998 302 5 1171 2319 80 114 6 chr9 76930160 76930512 -47145660 - RLTR10 LTR ERVK 0 390 1 5 1171 2322 149 2 103 chr9 76930513 76931275 -47144897 - L1Md_F LINE L1 -4489 1394 725 5 1171 368 283 48 7 chr9 76931272 76931418 -47144754 - L1Md_F LINE L1 -5801 815 664 5 1171 549 299 42 62 chr9 76931455 76932045 -47144127 - L1VL1 LINE L1 -6010 412 45 6 1171 279 300 75 103 chr9 76932085 76932899 -47143273 - L1M3 LINE L1 -2897 3243 2453 5 1171 946 128 0 16 chr9 76933514 76933697 -47142475 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1171 647 286 7 14 chr9 76933743 76933885 -47142287 + RSINE1 SINE B4 1 141 -24 6 1171 26 50 0 0 chr9 76933920 76933960 -47142212 + AT_rich Low_complexity Low_complexity 1 40 0 6 1171 266 279 0 0 chr9 76934128 76934189 -47141983 - ID_B1 SINE B4 -1 223 163 6 1171 505 276 134 10 chr9 76934226 76934420 -47141752 - ID_B1 SINE B4 -2 222 5 6 1171 601 240 63 47 chr9 76934423 76934677 -47141495 + Lx9 LINE L1 929 1186 -6422 6 1171 590 301 45 9 chr9 76934684 76934905 -47141267 + Lx9 LINE L1 5740 5968 -1676 6 1171 7845 140 68 16 chr9 76934988 76936526 -47139646 + Lx4A LINE L1 5445 7058 0 6 1171 521 305 142 50 chr9 76936668 76936986 -47139186 + Lx9 LINE L1 6362 6708 -936 6 1171 260 239 42 5 chr9 76937433 76937546 -47138626 + L1P5 LINE L1 5436 5555 -742 6 1171 28 0 0 0 chr9 76938307 76938335 -47137837 + AT_rich Low_complexity Low_complexity 1 28 0 6 1171 180 77 0 0 chr9 76938914 76938940 -47137232 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 6 1171 444 153 0 0 chr9 76939115 76939200 -47136972 + (CA)n Simple_repeat Simple_repeat 1 85 0 6 146 537 298 73 48 chr9 76939234 76939511 -47136661 - B4A SINE B4 0 292 1 6 1172 399 308 127 42 chr9 76940711 76940948 -47135224 + LTR16C LTR ERVL 231 487 -2 6 1172 1293 152 71 0 chr9 76941293 76941504 -47134668 + RLTR17 LTR ERVK 203 428 -264 6 1172 1486 145 8 12 chr9 76941592 76941851 -47134321 + RLTR22_Mur LTR ERVK 1591 1848 0 6 1172 619 306 76 57 chr9 76941851 76942275 -47133897 + RLTR22_Mur LTR ERVK 187 809 -595 6 1172 7443 73 3 4 chr9 76942308 76943329 -47132843 + L1_Mus3 LINE L1 5616 6635 -3 6 1172 402 254 38 131 chr9 76943330 76943566 -47132606 + RLTR22_Mur LTR ERVK 590 810 -998 6 1172 999 255 67 79 chr9 76943537 76943956 -47132216 + RMER12 LTR ERVK 702 1321 -1 6 1172 201 161 0 0 chr9 76944010 76944041 -47132131 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 6 1172 1263 96 39 0 chr9 76944167 76944345 -47131827 + B2_Mm2 SINE B2 2 186 -9 6 1172 614 150 8 0 chr9 76944427 76944547 -47131625 + (TA)n Simple_repeat Simple_repeat 1 121 0 6 1172 23 0 0 0 chr9 76947307 76947330 -47128842 + AT_rich Low_complexity Low_complexity 1 23 0 6 1172 476 298 103 95 chr9 76947363 76947711 -47128461 + ORR1E LTR MaLR 4 354 -5 6 1172 24 0 0 0 chr9 76947849 76947873 -47128299 + AT_rich Low_complexity Low_complexity 1 24 0 6 1172 1335 222 123 68 chr9 76948439 76948867 -47127305 + RLTR20B3 LTR ERVK 23 470 -107 6 1172 257 0 30 0 chr9 76948867 76948900 -47127272 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1172 1335 222 123 68 chr9 76948900 76948944 -47127228 + RLTR20B3 LTR ERVK 471 520 -57 6 1172 1166 70 0 0 chr9 76949451 76949607 -47126565 + L1Md_T LINE L1 6427 6582 0 6 1172 354 138 0 0 chr9 76951411 76951469 -47124703 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1172 513 0 0 0 chr9 76952528 76952585 -47123587 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1172 5307 154 31 14 chr9 76953103 76954091 -47122081 + Lx4B LINE L1 6032 7036 -22 6 1172 561 68 0 0 chr9 76954109 76954183 -47121989 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 1172 969 202 81 5 chr9 76954202 76954411 -47121761 - URR1A DNA MER1_type 0 226 2 6 1172 452 305 84 9 chr9 76954848 76955063 -47121109 + MER67C LTR ERV1 4 234 -477 6 1172 544 120 20 0 chr9 76955063 76955163 -47121009 + (TC)n Simple_repeat Simple_repeat 2 103 0 6 1172 545 314 88 46 chr9 76955208 76955492 -47120680 + MER67C LTR ERV1 334 629 -82 6 1172 284 361 62 22 chr9 76955826 76956050 -47120122 + L4 LINE RTE 1238 1470 -559 6 1172 307 252 212 18 chr9 76956304 76956417 -47119755 + ZP3AR Satellite Satellite 47 181 -31 6 1172 217 146 73 0 chr9 76956388 76956429 -47119743 + ID4_ SINE ID 5 48 -35 6 1172 324 261 14 0 chr9 76956430 76956499 -47119673 + ID4_ SINE ID 5 74 -9 6 1172 495 170 0 0 chr9 76956772 76956872 -47119300 + (TA)n Simple_repeat Simple_repeat 2 101 0 6 1172 354 327 44 57 chr9 76957188 76957415 -47118757 + RMER12 LTR ERVK 767 990 -332 6 1172 242 279 0 0 chr9 76957420 76957488 -47118684 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 6 1172 274 229 98 62 chr9 76957915 76958027 -47118145 + B1_Mur4 SINE Alu 33 148 -2 6 1172 4891 211 44 46 chr9 76958030 76959298 -47116874 + Lx7 LINE L1 6309 7574 -122 6 1172 2274 55 3 10 chr9 76959313 76959605 -47116567 - L1_Mus2 LINE L1 0 6566 6277 6 1172 384 230 0 0 chr9 76959610 76959697 -47116475 + Lx7 LINE L1 7592 7678 -18 6 1172 1384 171 8 0 chr9 76959945 76960191 -47115981 + Lx9 LINE L1 6669 6916 -728 6 1172 1010 226 165 0 chr9 76960189 76960515 -47115657 + Lx9 LINE L1 7021 7400 -244 6 1172 252 0 0 0 chr9 76960522 76960550 -47115622 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1172 351 0 0 0 chr9 76960550 76960588 -47115584 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1172 192 77 0 0 chr9 76961590 76961616 -47114556 + (TTC)n Simple_repeat Simple_repeat 2 27 0 6 1172 229 342 51 0 chr9 76961634 76961713 -47114459 - B1F SINE Alu -65 84 2 6 1172 3370 25 8 0 chr9 76962621 76963014 -47113158 + MTA_Mm LTR MaLR 1 396 0 6 1172 316 213 105 11 chr9 76963217 76963312 -47112860 - PB1D7 SINE Alu 0 120 17 6 1172 2030 65 0 26 chr9 76963506 76963776 -47112396 + L1_Mus2 LINE L1 6304 6566 0 6 1172 521 199 26 0 chr9 76964196 76964347 -47111825 + CT-rich Low_complexity Low_complexity 1 155 0 6 1172 5288 35 0 2 chr9 76965152 76965775 -47110397 + L1Md_F3 LINE L1 5953 6574 -10 6 1172 26 0 0 0 chr9 76965775 76965801 -47110371 + AT_rich Low_complexity Low_complexity 1 26 0 6 1172 236 98 48 32 chr9 76967077 76967140 -47109032 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 6 1172 24 96 0 0 chr9 76967141 76967214 -47108958 + AT_rich Low_complexity Low_complexity 1 73 0 6 1172 924 156 0 7 chr9 76967221 76967363 -47108809 + B1_Mur3 SINE Alu 9 149 0 6 1172 195 167 0 0 chr9 76968187 76968223 -47107949 + MIR SINE MIR 106 141 -121 6 1172 226 284 53 26 chr9 76968232 76968308 -47107864 + ID2 SINE ID 4 81 -2 6 1172 272 331 34 54 chr9 76970405 76970552 -47105620 + ID_B1 SINE B4 3 146 -78 6 1172 338 321 97 101 chr9 76970844 76971152 -47105020 + LTR16A1 LTR ERVL 143 449 -7 6 1172 3156 236 60 10 chr9 76971270 76972057 -47104115 + Lx7 LINE L1 6509 7334 -362 6 1172 329 252 109 130 chr9 76972136 76972462 -47103710 - RLTR15 LTR ERVK -51 477 22 6 1172 542 240 31 58 chr9 76972688 76972949 -47103223 + Lx7 LINE L1 7443 7696 0 6 1172 184 291 36 0 chr9 76973096 76973151 -47103021 - L3 LINE CR1 -1305 3184 3128 6 1172 438 114 0 0 chr9 76973819 76973889 -47102283 + (TCC)n Simple_repeat Simple_repeat 1 70 0 6 1172 318 26 0 0 chr9 76974305 76974344 -47101828 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1172 1046 255 112 11 chr9 76974345 76974710 -47101462 + RMER5 LTR ERV1 112 513 -21 6 1172 468 35 0 0 chr9 76974713 76974771 -47101401 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1172 396 0 0 0 chr9 76975400 76975444 -47100728 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1172 261 0 0 0 chr9 76976629 76976658 -47099514 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1172 1318 83 22 0 chr9 76976727 76976908 -47099264 - B2_Mm2 SINE B2 -9 186 2 6 1172 29085 27 0 0 chr9 76977172 76980792 -47095380 + L1Md_A LINE L1 1967 5586 -297 6 1172 8466 30 1 0 chr9 76980792 76981784 -47094388 + L1Md_A LINE L1 5587 6579 -3 6 1172 1060 281 114 12 chr9 76982218 76982241 -47093931 - ORR1D2 LTR MaLR -4 366 341 6 1172 474 18 0 0 chr9 76982241 76982296 -47093876 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 6 1172 1060 281 114 12 chr9 76982296 76982604 -47093568 - ORR1D2 LTR MaLR -30 340 3 6 1172 226 318 16 0 chr9 76982888 76982951 -47093221 + ID4_ SINE ID 3 66 -17 6 1172 216 135 0 0 chr9 76983188 76983225 -47092947 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1172 356 331 45 20 chr9 76983424 76983603 -47092569 - MIR SINE MIR -39 229 40 6 1172 214 337 104 10 chr9 76984472 76984568 -47091604 - PB1 SINE Alu -2 125 21 6 1172 24 32 0 0 chr9 76984813 76984844 -47091328 + AT_rich Low_complexity Low_complexity 1 31 0 6 1172 188 117 63 25 chr9 76985527 76985606 -47090566 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 1172 23 33 0 0 chr9 76985683 76985713 -47090459 + AT_rich Low_complexity Low_complexity 1 30 0 6 1172 201 220 0 0 chr9 76989276 76989309 -47086863 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1172 240 35 0 0 chr9 76989309 76989338 -47086834 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1172 201 220 0 0 chr9 76989338 76989354 -47086818 + (TA)n Simple_repeat Simple_repeat 1 16 0 6 1172 465 241 275 10 chr9 76990480 76990782 -47085390 + L1M3 LINE L1 4718 5099 -1041 6 1172 355 328 24 29 chr9 76990873 76991080 -47085092 + L1MA6 LINE L1 5900 6105 -195 6 1172 512 250 67 78 chr9 76991092 76991374 -47084798 + L1MA9 LINE L1 6006 6284 -28 6 1172 495 260 13 52 chr9 76991928 76991992 -47084180 - B4A SINE B4 -13 279 220 6 1172 492 48 0 0 chr9 76991992 76992055 -47084117 + (TTA)n Simple_repeat Simple_repeat 1 63 0 6 1172 495 260 13 52 chr9 76992055 76992144 -47084028 - B4A SINE B4 -73 219 132 6 1172 338 24 0 0 chr9 76992892 76992933 -47083239 - MTB LTR MaLR -2 398 358 6 1172 608 144 0 0 chr9 76992932 76993029 -47083143 - MTB LTR MaLR -310 97 1 6 1172 7240 87 18 58 chr9 76993029 76994173 -47081999 - MTB-int LTR MaLR 0 1098 1 6 1172 3145 73 5 0 chr9 76994173 76994571 -47081601 - MTB LTR MaLR 0 400 1 6 1172 1728 78 118 4 chr9 76994898 76995170 -47081002 - L1_Mus1 LINE L1 -441 6126 5824 6 1172 286 401 24 30 chr9 76995293 76995460 -47080712 - MER58A DNA MER1_type -47 177 12 6 1172 583 289 58 22 chr9 76997173 76997484 -47078688 + L1MA8 LINE L1 5698 6019 -272 6 1172 1117 256 102 26 chr9 76997497 76997802 -47078370 + ORR1D2 LTR MaLR 38 365 -5 6 1172 1174 68 0 0 chr9 76998301 76998448 -47077724 + B1_Mm SINE Alu 1 147 0 6 1172 984 291 77 36 chr9 76998608 76999307 -47076865 + L1M3 LINE L1 3685 4415 -1728 6 1172 583 317 13 13 chr9 76999321 76999548 -47076624 + Lx7 LINE L1 6214 6440 -1256 7 1172 288 0 0 0 chr9 76999577 76999609 -47076563 + (TGG)n Simple_repeat Simple_repeat 1 32 0 7 1172 321 224 39 11 chr9 76999798 76999972 -47076200 + L1M3 LINE L1 4392 4573 -1567 6 1172 36734 34 14 9 chr9 77000134 77005625 -47070547 + L1Md_T LINE L1 61 5586 -297 1 1172 8352 32 3 0 chr9 77005625 77006617 -47069555 + L1Md_T LINE L1 5587 6581 -1 1 1172 185 65 32 0 chr9 77006660 77006691 -47069481 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1172 406 305 7 37 chr9 77006710 77006846 -47069326 - B4 SINE B4 -54 238 107 3 1172 528 128 0 0 chr9 77006891 77006969 -47069203 - Lx9 LINE L1 -418 7226 7149 4 1172 422 193 40 73 chr9 77008544 77008681 -47067491 - URR1B DNA MER1_type -2 223 1 5 1172 249 317 37 0 chr9 77011005 77011087 -47065085 - PB1 SINE Alu -20 107 23 6 1172 792 202 29 151 chr9 77011672 77011917 -47064255 - B3 SINE B2 -1 215 1 7 1172 363 44 0 0 chr9 77012138 77012183 -47063989 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1172 612 302 0 0 chr9 77014371 77014497 -47061675 + RSINE1 SINE B4 2 127 -38 9 1172 374 94 16 0 chr9 77014497 77014561 -47061611 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1172 1455 51 6 0 chr9 77016032 77016209 -47059963 + B2_Mm1t SINE B2 2 179 -14 1 1172 435 324 20 13 chr9 77016407 77016557 -47059615 + MER5A1 DNA MER1_type 1 151 -15 1 1172 350 307 29 10 chr9 77017855 77017939 -47058233 + B4 SINE B4 189 274 -18 1 1172 471 87 0 0 chr9 77017939 77018008 -47058164 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1172 350 307 29 10 chr9 77018008 77018025 -47058147 + B4 SINE B4 275 291 -1 1 1172 194 353 0 14 chr9 77020782 77020851 -47055321 + MIRc SINE MIR 80 147 -121 1 1172 336 208 73 32 chr9 77021189 77021313 -47054859 + Lx9 LINE L1 7508 7636 -8 1 1172 22 35 0 0 chr9 77021313 77021342 -47054830 + AT_rich Low_complexity Low_complexity 1 29 0 1 1172 339 245 112 21 chr9 77022916 77023104 -47053068 + L1MA7 LINE L1 6083 6287 -4 1 1172 259 295 101 37 chr9 77023225 77023334 -47052838 - PB1D10 SINE Alu -1 116 1 1 1172 321 288 0 0 chr9 77024503 77024576 -47051596 + ID4 SINE ID 9 81 -2 2 1172 206 250 29 29 chr9 77024975 77025045 -47051127 + CT-rich Low_complexity Low_complexity 4 73 0 2 1172 537 58 0 0 chr9 77025062 77025131 -47051041 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1172 405 335 106 12 chr9 77026468 77026722 -47049450 + B4A SINE B4 5 282 -10 2 1172 3372 44 0 0 chr9 77027926 77028332 -47047840 - L1_Mus1 LINE L1 0 6567 6162 2 1172 1099 38 0 0 chr9 77028332 77028464 -47047708 + L1_Mus1 LINE L1 6027 6158 -409 2 1172 383 309 89 74 chr9 77028480 77028683 -47047489 - B3 SINE B2 -6 210 5 2 1172 300 355 114 18 chr9 77029383 77029656 -47046516 + L2 LINE L2 675 973 -2446 2 1172 28 48 0 0 chr9 77029780 77029822 -47046350 + AT_rich Low_complexity Low_complexity 1 42 0 2 1172 236 384 147 26 chr9 77030570 77030992 -47045180 - L2 LINE L2 -818 2601 2129 2 1172 2687 24 3 26 chr9 77031117 77031459 -47044713 - L1Md_F3 LINE L1 0 6584 6251 2 1172 719 292 99 32 chr9 77031524 77031807 -47044365 - MLT1A0 LTR MaLR -13 352 51 3 1172 333 0 0 0 chr9 77033005 77033042 -47043130 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1172 569 348 0 0 chr9 77033045 77033183 -47042989 - RSINE1 SINE B4 -25 140 3 3 1172 388 176 118 0 chr9 77033963 77034031 -47042141 - tRNA-Lys-AAG tRNA tRNA 0 76 1 3 1172 306 0 0 0 chr9 77035156 77035190 -47040982 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 1172 183 80 0 0 chr9 77035206 77035231 -47040941 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 3 1172 1171 61 0 0 chr9 77035231 77035378 -47040794 - B1_Mm SINE Alu 0 147 1 3 1172 28 48 0 0 chr9 77035714 77035756 -47040416 + AT_rich Low_complexity Low_complexity 1 42 0 3 1172 185 35 0 65 chr9 77035992 77036003 -47040169 + (CAAAAA)n Simple_repeat Simple_repeat 2 11 0 3 1172 991 65 64 21 chr9 77036003 77036144 -47040028 + B1_Mm SINE Alu 1 147 0 3 1172 185 35 0 65 chr9 77036144 77036163 -47040009 + (CAAAAA)n Simple_repeat Simple_repeat 6 24 0 4 1172 216 265 59 0 chr9 77037151 77037219 -47038953 + MIRm SINE MIR 193 264 -12 4 1172 228 331 23 8 chr9 77038886 77039014 -47037158 - L1MEf LINE L1 -5427 773 644 4 1172 297 328 114 86 chr9 77039100 77039240 -47036932 - RSINE1 SINE B4 -19 146 3 4 1172 388 302 0 101 chr9 77039619 77039748 -47036424 - PB1D10 SINE Alu -1 116 1 4 1172 635 301 12 35 chr9 77039748 77039811 -47036361 - ID SINE ID -149 75 17 4 1172 2724 311 83 39 chr9 77040441 77040860 -47035312 - Lx8 LINE L1 -59 7414 6968 4 1172 1096 79 0 27 chr9 77040860 77041043 -47035129 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 1172 2724 311 83 39 chr9 77041043 77041930 -47034242 - Lx8 LINE L1 -506 6967 6051 4 1172 439 315 64 25 chr9 77042029 77042231 -47033941 + MARNA DNA Mariner 335 544 -42 4 1172 1257 164 104 3 chr9 77042576 77042863 -47033309 - Lx9 LINE L1 0 7644 7329 4 1172 476 314 72 10 chr9 77043332 77043525 -47032647 - LTR53 LTR ERVL -314 205 1 5 1172 467 370 35 27 chr9 77043938 77044196 -47031976 + B4A SINE B4 12 271 -21 5 1172 495 0 0 0 chr9 77044200 77044255 -47031917 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1172 1708 262 37 45 chr9 77044476 77045013 -47031159 - Lx6 LINE L1 -26 7434 6527 5 1172 296 258 139 8 chr9 77045084 77045213 -47030959 - Charlie19a DNA Charlie -174 212 67 5 1172 2412 188 42 22 chr9 77046453 77046861 -47029311 + RLTR20B3 LTR ERVK 66 471 -106 5 1172 852 63 0 0 chr9 77046861 77046972 -47029200 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1172 2412 188 42 22 chr9 77046972 77047064 -47029108 + RLTR20B3 LTR ERVK 472 574 -3 5 1172 2644 240 46 93 chr9 77047105 77048734 -47027438 + Lx9 LINE L1 516 2068 -3779 5 1172 3514 143 29 45 chr9 77048738 77049388 -47026784 + RLTR26 LTR ERVK 3 642 0 5 1172 1775 196 25 144 chr9 77049388 77049492 -47026680 + Lx9 LINE L1 2103 2198 -3649 5 1172 261 0 0 0 chr9 77049492 77049522 -47026650 + U6 snRNA snRNA 1 30 -77 5 1172 1775 196 25 144 chr9 77049522 77050021 -47026151 + Lx9 LINE L1 2199 2660 -3187 5 1172 891 170 13 0 chr9 77050022 77050175 -47025997 + MTC LTR MaLR 1 155 -266 6 1172 8432 247 51 37 chr9 77050179 77054228 -47021944 + Lx9 LINE L1 2638 6984 -660 5 1172 422 8 0 141 chr9 77054228 77054384 -47021788 + (TCTCCC)n Simple_repeat Simple_repeat 5 138 0 6 1172 21 57 0 0 chr9 77054546 77054581 -47021591 + AT_rich Low_complexity Low_complexity 1 35 0 6 1172 28 29 0 0 chr9 77054905 77054940 -47021232 + AT_rich Low_complexity Low_complexity 1 35 0 6 1172 831 192 93 0 chr9 77055594 77055755 -47020417 - Lx5 LINE L1 -118 6932 6757 6 1172 7806 55 0 8 chr9 77056201 77057241 -47018931 + L1Md_F2 LINE L1 4555 5586 -297 6 1172 7932 52 2 6 chr9 77057241 77058241 -47017931 + L1Md_F2 LINE L1 5587 6582 0 6 1172 3434 92 2 4 chr9 77058265 77058734 -47017438 + L1Md_F2 LINE L1 6102 6569 -13 6 1172 2637 299 73 18 chr9 77058764 77058950 -47017222 + Lx8 LINE L1 6171 6361 -1112 6 1172 1909 151 119 3 chr9 77058950 77059303 -47016869 + ORR1B1 LTR MaLR 1 394 0 6 1172 2637 299 73 18 chr9 77059303 77060168 -47016004 + Lx8 LINE L1 6362 7280 -193 6 1172 965 98 7 0 chr9 77060235 77060378 -47015794 - URR1B DNA MER1_type 0 225 82 6 1172 32 0 0 0 chr9 77060474 77060506 -47015666 + AT_rich Low_complexity Low_complexity 1 32 0 7 1172 1127 124 119 0 chr9 77060519 77060721 -47015451 - URR1B DNA MER1_type 0 225 1 6 1172 779 261 73 11 chr9 77060722 77060900 -47015272 + B3 SINE B2 4 192 -24 7 1172 392 188 16 0 chr9 77061164 77061228 -47014944 + ID4_ SINE ID 5 69 -14 7 1172 1112 44 0 0 chr9 77062092 77062228 -47013944 + L1Md_F2 LINE L1 5450 5585 -298 7 1172 7704 54 24 2 chr9 77062229 77063201 -47012971 + L1Md_F2 LINE L1 5587 6579 -3 7 1172 348 331 29 0 chr9 77065220 77065356 -47010816 - B1F SINE Alu -9 140 1 7 1172 1354 266 55 38 chr9 77065792 77065958 -47010214 + Lx7 LINE L1 5999 6171 -1525 7 1172 450 0 0 0 chr9 77065958 77066008 -47010164 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1172 1354 266 55 38 chr9 77066008 77066311 -47009861 + Lx7 LINE L1 6172 6476 -1220 7 1172 638 266 0 137 chr9 77066312 77066404 -47009768 - RLTR20D LTR ERVK -4 564 477 7 1172 584 71 24 0 chr9 77066404 77066489 -47009683 + (CATA)n Simple_repeat Simple_repeat 4 90 0 7 1172 638 266 0 137 chr9 77066489 77066579 -47009593 - RLTR20D LTR ERVK -92 476 407 7 1172 540 276 57 62 chr9 77066568 77066777 -47009395 - RLTR20D LTR ERVK -285 283 76 7 1172 1533 110 41 19 chr9 77066777 77067046 -47009126 + Lx LINE L1 6347 6621 -33 7 1172 410 75 15 0 chr9 77067046 77067113 -47009059 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 8 1172 3493 241 76 26 chr9 77067147 77068201 -47007971 + Lx7 LINE L1 6565 7671 -25 7 1172 204 167 0 0 chr9 77068559 77068607 -47007565 + (CATA)n Simple_repeat Simple_repeat 2 49 0 8 1172 224 286 57 40 chr9 77068730 77068854 -47007318 + MIR3 SINE MIR 81 206 -2 8 1172 24 0 0 0 chr9 77069065 77069089 -47007083 + AT_rich Low_complexity Low_complexity 1 24 0 8 1173 287 129 62 31 chr9 77070952 77071048 -47005124 + T-rich Low_complexity Low_complexity 3 101 0 8 1173 531 219 0 26 chr9 77071055 77071172 -47005000 - PB1D9 SINE Alu -5 115 2 8 1173 1010 279 3 49 chr9 77071274 77071579 -47004593 + B4A SINE B4 2 292 0 8 1173 224 252 29 29 chr9 77071579 77071681 -47004491 + (CATA)n Simple_repeat Simple_repeat 3 104 0 8 1173 1890 293 83 35 chr9 77072238 77073094 -47003078 + Lx9 LINE L1 6521 7417 -227 8 1173 602 0 27 0 chr9 77073097 77073170 -47003002 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 8 1173 279 0 0 0 chr9 77073393 77073424 -47002748 + (TC)n Simple_repeat Simple_repeat 1 31 0 9 1173 411 132 0 0 chr9 77074607 77074675 -47001497 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 9 1173 1730 226 66 13 chr9 77075447 77075842 -47000330 + MTD LTR MaLR 4 419 0 9 1173 275 278 113 0 chr9 77075872 77075969 -47000203 + PB1D10 SINE Alu 1 108 -9 9 1173 308 54 0 0 chr9 77077048 77077085 -46999087 - HAL1-3A_ME LINE L1 -846 2012 1976 9 1173 410 211 0 9 chr9 77077086 77077196 -46998976 + (TG)n Simple_repeat Simple_repeat 2 110 0 9 1173 645 147 0 0 chr9 77079837 77079946 -46996226 + (TA)n Simple_repeat Simple_repeat 2 110 0 9 1173 207 0 0 0 chr9 77080533 77080556 -46995616 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1173 32 43 0 0 chr9 77081177 77081223 -46994949 + AT_rich Low_complexity Low_complexity 1 46 0 9 1173 873 143 21 0 chr9 77082878 77083018 -46993154 - URR1B DNA MER1_type 0 225 83 9 1173 372 276 58 102 chr9 77082879 77083085 -46993087 + CYRA11_Mm Unknown Y-chromosome 172 368 -249 1 1173 524 164 22 7 chr9 77083474 77083609 -46992563 + GA-rich Low_complexity Low_complexity 3 139 0 1 1173 1152 75 0 0 chr9 77084533 77084679 -46991493 - B1_Mm SINE Alu -1 146 1 1 1173 1327 34 11 11 chr9 77084767 77084944 -46991228 + (TCTCCC)n Simple_repeat Simple_repeat 1 177 0 1 1173 729 244 40 23 chr9 77085752 77085928 -46990244 + B3 SINE B2 1 179 -37 1 1173 3789 62 14 10 chr9 77088167 77088670 -46987502 + L1Md_F2 LINE L1 6066 6570 -12 1 1173 180 0 0 0 chr9 77088671 77088691 -46987481 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1173 788 284 60 34 chr9 77088698 77088964 -46987208 + B4A SINE B4 4 276 -16 1 1173 225 0 0 0 chr9 77090854 77090879 -46985293 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1173 981 69 0 0 chr9 77091008 77091138 -46985034 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 1173 893 174 7 0 chr9 77091729 77091873 -46984299 + B1_Mur4 SINE Alu 2 146 -4 1 1173 4474 59 2 2 chr9 77092053 77092610 -46983562 - L1_Mus1 LINE L1 0 6567 6011 1 1173 3968 122 132 47 chr9 77092818 77093497 -46982675 + RMER19A LTR ERVK 1 737 0 1 1173 226 264 120 19 chr9 77093817 77093925 -46982247 - L2a LINE L2 -56 3370 3252 1 1173 544 223 165 20 chr9 77094102 77094276 -46981896 + B3A SINE B2 8 209 -7 1 1173 568 294 57 28 chr9 77095338 77095780 -46980392 + L1_Mur3 LINE L1 913 1372 -4508 1 1173 3102 242 37 41 chr9 77095792 77096878 -46979294 + L1_Mur3 LINE L1 1470 2550 -3330 1 1173 413 206 0 9 chr9 77096878 77096986 -46979186 + T-rich Low_complexity Low_complexity 4 110 0 1 1173 21 71 0 0 chr9 77097050 77097092 -46979080 + AT_rich Low_complexity Low_complexity 1 42 0 1 1173 1348 277 30 22 chr9 77097361 77097727 -46978445 + MTEa LTR MaLR 6 374 -5 1 1173 21 0 0 0 chr9 77097729 77097750 -46978422 + AT_rich Low_complexity Low_complexity 1 21 0 1 1173 837 30 0 0 chr9 77098759 77098859 -46977313 + (GAA)n Simple_repeat Simple_repeat 3 102 0 1 1173 903 109 0 0 chr9 77099715 77099853 -46976319 + (CA)n Simple_repeat Simple_repeat 2 139 0 1 1173 954 238 57 13 chr9 77101094 77101437 -46974735 - MTD LTR MaLR -14 405 10 1 1173 2806 116 19 0 chr9 77102575 77103007 -46973165 - Lx3C LINE L1 -141 5745 5306 1 1173 2607 103 55 0 chr9 77103006 77103422 -46972750 + Lx3C LINE L1 5760 6198 -778 1 1173 9149 52 1 1 chr9 77103416 77104607 -46971565 - L1Md_F2 LINE L1 -341 5542 4352 1 1173 381 43 0 0 chr9 77104605 77104651 -46971521 + L1Md_F2 LINE L1 5541 5586 -297 1 1173 8228 38 2 1 chr9 77104651 77105646 -46970526 + L1Md_F2 LINE L1 5587 6582 0 1 1173 496 83 0 0 chr9 77105646 77105718 -46970454 + Lx3C LINE L1 6187 6258 -723 1 1173 271 196 0 0 chr9 77105721 77105777 -46970395 + Lx3B LINE L1 6662 6717 -256 1 1173 716 0 12 0 chr9 77105781 77105865 -46970307 + (TC)n Simple_repeat Simple_repeat 2 86 0 1 1173 303 28 0 0 chr9 77105940 77105976 -46970196 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1173 249 33 0 0 chr9 77105996 77106026 -46970146 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1173 994 223 44 0 chr9 77107463 77107669 -46968503 + B3 SINE B2 2 216 0 1 1173 205 279 0 0 chr9 77109935 77109978 -46966194 + MIR SINE MIR 61 103 -159 1 1173 186 375 81 27 chr9 77110529 77110677 -46965495 + MIR3 SINE MIR 23 178 -30 1 1173 316 297 33 75 chr9 77111821 77111941 -46964231 - MTEa LTR MaLR -264 115 1 1 1173 225 0 0 0 chr9 77112469 77112494 -46963678 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1173 279 274 10 10 chr9 77114309 77114405 -46961767 + (TTA)n Simple_repeat Simple_repeat 2 97 0 1 1173 411 309 87 7 chr9 77114505 77114655 -46961517 - MER58A DNA MER1_type 0 224 63 1 1173 201 345 0 0 chr9 77114852 77114907 -46961265 + MIR SINE MIR 87 141 -67 1 1173 1923 198 6 3 chr9 77115531 77115885 -46960287 + MT2A LTR ERVL 3 357 -176 1 1173 24 32 0 0 chr9 77116999 77117030 -46959142 + AT_rich Low_complexity Low_complexity 1 31 0 1 1173 677 315 24 15 chr9 77117139 77117345 -46958827 + MER20 DNA MER1_type 8 215 -4 1 1173 309 290 0 0 chr9 77117698 77117767 -46958405 + ID4_ SINE ID 7 75 -8 1 1173 365 219 30 17 chr9 77117822 77117916 -46958256 - MTEb LTR MaLR -4 415 290 1 1173 295 244 34 25 chr9 77118266 77118384 -46957788 - Lx8 LINE L1 -2 7471 7353 1 1173 231 187 145 13 chr9 77118493 77118569 -46957603 + Lx8 LINE L1 6967 7052 -421 1 1173 216 158 0 0 chr9 77120749 77120787 -46955385 + GA-rich Low_complexity Low_complexity 6 43 0 1 1173 7606 60 0 0 chr9 77121025 77122076 -46954096 - L1_Mus1 LINE L1 -1 6653 5522 1 1173 188 339 16 0 chr9 77122796 77122858 -46953314 - L2b LINE L2 -15 3360 3298 1 1173 1397 242 13 10 chr9 77122865 77123170 -46953002 + MTEa LTR MaLR 74 379 0 1 1173 1566 214 37 8 chr9 77123490 77123843 -46952329 + ORR1B2 LTR MaLR 1 363 -4 1 1173 1606 151 38 0 chr9 77123896 77124161 -46952011 + ORR1A3 LTR MaLR 1 275 -51 1 1173 192 333 92 53 chr9 77124222 77124428 -46951744 - L2b LINE L2 -943 2476 2263 1 1173 256 389 66 37 chr9 77125063 77125306 -46950866 - MIR SINE MIR -12 250 1 1 1173 228 169 56 0 chr9 77126317 77126388 -46949784 + GA-rich Low_complexity Low_complexity 2 76 0 1 1173 32 57 0 0 chr9 77126633 77126686 -46949486 + AT_rich Low_complexity Low_complexity 1 53 0 1 1173 282 280 78 107 chr9 77127315 77127559 -46948613 + B4A SINE B4 2 238 -54 1 1173 258 156 125 0 chr9 77127976 77128040 -46948132 - L1M2 LINE L1 -910 5233 5162 1 1173 562 281 111 14 chr9 77128477 77129018 -46947154 + L1_Rod LINE L1 1025 1615 -4232 1 1173 225 0 0 0 chr9 77129019 77129044 -46947128 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1173 4108 260 64 55 chr9 77129065 77131005 -46945167 + L1_Rod LINE L1 3748 5706 -141 1 1173 284 246 18 30 chr9 77132409 77132563 -46943609 - L1MA8 LINE L1 -340 5972 5820 1 1173 411 299 141 6 chr9 77132547 77132873 -46943299 - L1MA8 LINE L1 -630 5667 5298 1 1173 492 62 0 0 chr9 77132908 77132972 -46943200 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1173 435 302 94 0 chr9 77132974 77133123 -46943049 - RSINE1 SINE B4 0 165 3 1 1173 983 288 28 107 chr9 77133213 77133743 -46942429 - L1MA8 LINE L1 -919 5224 4693 1 1173 1539 68 5 0 chr9 77133743 77133949 -46942223 - L1_Mus2 LINE L1 0 6566 6360 1 1173 983 288 28 107 chr9 77133949 77134029 -46942143 - L1MA8 LINE L1 -1451 4692 4656 1 1173 1288 47 0 12 chr9 77134029 77134200 -46941972 - L1Md_F2 LINE L1 -12 6570 6402 1 1173 983 288 28 107 chr9 77134200 77134532 -46941640 - L1MA8 LINE L1 -1488 4655 4356 1 1173 454 304 123 82 chr9 77134990 77135330 -46940842 + ORR1E LTR MaLR 1 354 -5 1 1173 504 0 0 0 chr9 77136506 77136562 -46939610 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1173 969 263 24 131 chr9 77136802 77137222 -46938950 - MTE2a LTR MaLR -4 375 1 1 1173 182 236 66 53 chr9 77137323 77137399 -46938773 + L4 LINE RTE 650 726 -1303 1 1173 244 299 81 98 chr9 77138447 77138621 -46937551 - MTC-int LTR MaLR -544 714 544 1 1173 210 37 0 0 chr9 77139646 77139673 -46936499 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1173 617 310 20 29 chr9 77139755 77140001 -46936171 - Lx8 LINE L1 -178 7295 7052 1 1173 202 217 0 0 chr9 77140824 77140870 -46935302 + CT-rich Low_complexity Low_complexity 2 47 0 1 1173 258 32 0 0 chr9 77140877 77140908 -46935264 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1173 556 292 22 14 chr9 77140909 77141048 -46935124 - RSINE1 SINE B4 -24 141 2 1 1173 220 284 30 0 chr9 77141101 77141114 -46935058 + B4 SINE B4 2 70 -222 1 1173 245 259 0 0 chr9 77141114 77141168 -46935004 + ID4 SINE ID 16 69 -14 1 1173 188 35 35 0 chr9 77143517 77143546 -46932626 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1173 952 161 63 0 chr9 77143558 77143732 -46932440 + Lx9 LINE L1 7283 7467 -177 1 1173 450 0 0 0 chr9 77143733 77143783 -46932389 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1173 504 101 35 35 chr9 77143783 77143896 -46932276 + Lx9 LINE L1 7531 7643 -1 1 1173 22 56 0 0 chr9 77145402 77145438 -46930734 + AT_rich Low_complexity Low_complexity 1 36 0 1 1173 1095 123 0 0 chr9 77145807 77146011 -46930161 + (GAA)n Simple_repeat Simple_repeat 1 204 0 1 1173 1084 157 6 0 chr9 77146058 77146224 -46929948 + RLTR17 LTR ERVK 203 369 -323 1 1173 567 0 0 0 chr9 77146224 77146287 -46929885 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 1 1173 1317 78 0 0 chr9 77146302 77146481 -46929691 + (GGAAA)n Simple_repeat Simple_repeat 1 179 0 1 1173 2001 99 83 0 chr9 77146852 77147154 -46929018 + ORR1A2 LTR MaLR 1 327 0 1 1173 216 321 0 12 chr9 77147410 77147492 -46928680 + G-rich Low_complexity Low_complexity 5 85 0 1 1173 2452 257 72 22 chr9 77147499 77148226 -46927946 + Lx8 LINE L1 6600 7362 -111 1 1173 27 0 0 0 chr9 77148255 77148282 -46927890 + AT_rich Low_complexity Low_complexity 1 27 0 1 1173 195 42 0 0 chr9 77148282 77148306 -46927866 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1173 279 0 0 0 chr9 77148754 77148785 -46927387 + (CCA)n Simple_repeat Simple_repeat 1 31 0 1 1173 564 156 0 0 chr9 77148783 77148892 -46927280 + (CA)n Simple_repeat Simple_repeat 1 109 0 1 1173 1587 146 137 63 chr9 77149651 77149808 -46926364 + ORR1C1 LTR MaLR 3 185 -193 1 1173 546 16 0 0 chr9 77149808 77149871 -46926301 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1173 1587 146 137 63 chr9 77149871 77150063 -46926109 + ORR1C1 LTR MaLR 186 378 0 1 1173 22 35 0 0 chr9 77151463 77151492 -46924680 + AT_rich Low_complexity Low_complexity 1 29 0 1 1173 355 320 39 23 chr9 77151516 77151644 -46924528 - RSINE1 SINE B4 -2 163 34 1 1173 317 205 125 118 chr9 77152476 77152620 -46923552 + B1_Mus2 SINE Alu 2 146 -1 1 1173 1474 218 109 43 chr9 77152772 77152884 -46923288 + MTD LTR MaLR 1 111 -308 1 1173 189 0 0 0 chr9 77152884 77152905 -46923267 + (ATG)n Simple_repeat Simple_repeat 1 21 0 1 1173 1474 218 109 43 chr9 77152905 77153185 -46922987 + MTD LTR MaLR 112 419 0 1 1173 260 339 74 0 chr9 77153941 77154062 -46922110 + RSINE1 SINE B4 28 157 -8 1 1173 207 218 0 0 chr9 77154162 77154217 -46921955 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1173 5922 89 22 11 chr9 77154463 77155292 -46920880 - Lx LINE L1 -5 6649 5812 1 1173 275 299 56 98 chr9 77155473 77155707 -46920465 + MIRb SINE MIR 45 268 0 1 1173 472 179 9 9 chr9 77156503 77156616 -46919556 + GA-rich Low_complexity Low_complexity 2 114 0 2 1173 1269 88 27 11 chr9 77157156 77157340 -46918832 - B2_Mm2 SINE B2 -8 187 1 2 1173 201 74 0 0 chr9 77157433 77157460 -46918712 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1173 357 264 76 0 chr9 77157568 77157712 -46918460 + L1M1 LINE L1 5644 5798 -502 2 1173 21 36 0 0 chr9 77157971 77157999 -46918173 + AT_rich Low_complexity Low_complexity 1 28 0 2 1173 189 0 0 0 chr9 77158358 77158379 -46917793 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1173 229 243 108 0 chr9 77159841 77159915 -46916257 + MLT1K LTR MaLR 500 581 -14 2 1173 37 23 0 0 chr9 77160214 77160258 -46915914 + AT_rich Low_complexity Low_complexity 1 44 0 2 1173 180 77 0 0 chr9 77161443 77161469 -46914703 + (CATG)n Simple_repeat Simple_repeat 3 28 0 2 1173 808 73 0 9 chr9 77161577 77161688 -46914484 - L1Md_F2 LINE L1 -490 6092 5983 2 1173 3775 50 27 4 chr9 77161688 77162170 -46914002 + L1Md_F2 LINE L1 6090 6582 0 2 1173 1470 247 27 24 chr9 77164331 77164700 -46911472 - ORR1D1 LTR MaLR -4 370 1 2 1173 309 340 27 60 chr9 77165675 77165825 -46910347 - RLTR18 LTR ERVK -3 613 469 2 1173 227 200 0 0 chr9 77166838 77166888 -46909284 + A-rich Low_complexity Low_complexity 1 50 0 2 1173 675 136 0 0 chr9 77167646 77167756 -46908416 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 2 1173 265 304 17 17 chr9 77168146 77168263 -46907909 - L1MB8 LINE L1 -13 6165 6049 2 1173 326 223 16 16 chr9 77168498 77168621 -46907551 + GA-rich Low_complexity Low_complexity 4 126 0 2 1173 795 213 401 39 chr9 77168703 77168981 -46907191 + ORR1D1 LTR MaLR 6 384 0 2 1173 26 0 0 0 chr9 77169280 77169306 -46906866 + AT_rich Low_complexity Low_complexity 1 26 0 2 1173 372 267 49 16 chr9 77169574 77169696 -46906476 + MLT1A1 LTR MaLR 270 395 -13 2 1173 297 103 0 0 chr9 77170619 77170658 -46905514 + RMER6C LTR ERVK 1 39 -681 2 1173 500 174 0 140 chr9 77170657 77170771 -46905401 + MT2B LTR ERVL 195 292 -309 2 1173 1457 146 23 68 chr9 77170846 77171154 -46905018 + RMER6C LTR ERVK 397 690 0 2 1173 225 0 0 0 chr9 77171638 77171663 -46904509 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1173 517 253 118 46 chr9 77171948 77172238 -46903934 + L1MC1 LINE L1 5588 5888 -445 2 1173 994 128 6 6 chr9 77172482 77172655 -46903517 + (TCC)n Simple_repeat Simple_repeat 3 175 0 2 1173 609 14 0 0 chr9 77172657 77172727 -46903445 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1173 22 0 0 0 chr9 77173910 77173932 -46902240 + AT_rich Low_complexity Low_complexity 1 22 0 2 1173 23 54 0 0 chr9 77175867 77175904 -46900268 + AT_rich Low_complexity Low_complexity 1 37 0 2 1173 1866 279 45 34 chr9 77176260 77177029 -46899143 + L1_Mur3 LINE L1 4049 4826 -1054 2 1173 818 252 5 10 chr9 77177033 77177233 -46898939 - Lx6 LINE L1 -26 7434 7236 2 1173 2684 166 112 0 chr9 77177233 77177762 -46898410 + Lx8 LINE L1 4132 4719 -1158 2 1173 474 219 67 0 chr9 77177762 77177867 -46898305 + L1M2 LINE L1 4849 4960 -1183 2 1173 355 271 24 0 chr9 77177933 77178018 -46898154 - B3A SINE B2 -64 134 48 2 1173 537 284 73 6 chr9 77178048 77178225 -46897947 + Lx8 LINE L1 4922 5110 -770 2 1173 306 164 0 0 chr9 77178248 77178303 -46897869 + GA-rich Low_complexity Low_complexity 3 57 0 2 1173 1425 309 61 73 chr9 77178330 77178922 -46897250 + Lx8 LINE L1 5587 6185 -1288 2 1173 719 280 25 54 chr9 77178922 77179126 -46897046 + B3A SINE B2 1 198 0 2 1173 1425 309 61 73 chr9 77179126 77179148 -46897024 + Lx8 LINE L1 6186 6201 -1272 2 1173 1393 87 11 16 chr9 77179148 77179335 -46896837 + B2_Mm2 SINE B2 1 186 -9 2 1173 1425 309 61 73 chr9 77179335 77179601 -46896571 + Lx8 LINE L1 6202 6458 -1015 2 1173 3038 60 70 0 chr9 77179653 77180037 -46896135 + IAPLTR2a LTR ERVK 1 411 0 2 1173 827 108 26 62 chr9 77180039 77180187 -46895985 + IAPEz-int LTR ERVK 3 193 -6288 2 1173 242 327 0 0 chr9 77180187 77180242 -46895930 + RLTR27 LTR ERVK 221 275 -34 2 1173 3523 55 22 16 chr9 77180242 77180808 -46895364 + IAPEz-int LTR ERVK 168 662 -5819 2 1173 2190 83 0 0 chr9 77180808 77181086 -46895086 + IAPEz-int LTR ERVK 1359 1636 -4845 2 1173 6215 40 4 13 chr9 77181085 77181836 -46894336 + IAPEz-int LTR ERVK 5736 6479 -2 2 1173 3049 60 70 0 chr9 77181838 77182222 -46893950 + IAPLTR2a LTR ERVK 1 411 0 2 1173 1693 310 69 63 chr9 77182234 77183078 -46893094 + Lx8 LINE L1 6552 7400 -73 2 1173 25 65 0 0 chr9 77183156 77183202 -46892970 + AT_rich Low_complexity Low_complexity 1 46 0 2 1173 435 174 0 0 chr9 77183787 77183873 -46892299 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 1173 2004 215 90 9 chr9 77184251 77184696 -46891476 + Lx6 LINE L1 6980 7460 0 2 1173 528 307 58 11 chr9 77185568 77185759 -46890413 - Lx8 LINE L1 -93 7380 7181 2 1173 539 327 98 46 chr9 77186032 77186420 -46889752 - MLT1A1 LTR MaLR 0 408 1 2 1173 330 250 69 35 chr9 77186454 77186570 -46889602 + B1F SINE Alu 30 149 0 2 1173 757 210 22 77 chr9 77186690 77186871 -46889301 + B3A SINE B2 12 182 -16 2 1173 294 29 0 0 chr9 77186886 77186921 -46889251 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1173 447 19 0 0 chr9 77187343 77187395 -46888777 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 2 1173 285 29 0 0 chr9 77188437 77188471 -46887701 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1173 263 200 169 0 chr9 77189040 77189105 -46887067 - MIR3 SINE MIR -50 158 83 2 1173 198 0 0 0 chr9 77190043 77190065 -46886107 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1173 544 311 52 45 chr9 77192630 77192916 -46883256 + B4A SINE B4 1 288 -4 2 1173 366 23 0 0 chr9 77192963 77193006 -46883166 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1173 297 273 0 0 chr9 77193492 77193580 -46882592 - Tigger15a DNA TcMar -116 599 512 2 1173 711 116 0 0 chr9 77194155 77194276 -46881896 + (TG)n Simple_repeat Simple_repeat 2 122 0 2 1173 211 370 67 31 chr9 77194317 77194512 -46881660 - MIRb SINE MIR -50 218 17 2 1173 205 255 0 0 chr9 77195573 77195620 -46880552 + GA-rich Low_complexity Low_complexity 1 47 0 2 1173 422 298 117 19 chr9 77196754 77197123 -46879049 + L1MB7 LINE L1 5764 6168 -16 2 1173 486 315 8 8 chr9 77197345 77197476 -46878696 + B1F SINE Alu 14 144 -5 2 1173 396 103 0 0 chr9 77197488 77197546 -46878626 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 2 1173 2910 10 0 0 chr9 77197719 77198062 -46878110 + L1Md_A LINE L1 6269 6582 0 2 1173 1586 278 35 12 chr9 77198871 77199276 -46876896 - Lx5 LINE L1 -15 7035 6622 2 1173 1220 142 23 0 chr9 77199440 77199616 -46876556 + B2_Mm2 SINE B2 2 181 -14 2 1173 236 30 30 0 chr9 77199983 77200016 -46876156 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1173 543 31 0 0 chr9 77200039 77200104 -46876068 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1174 213 39 0 0 chr9 77201426 77201452 -46874720 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 2 1174 273 29 0 0 chr9 77201533 77201567 -46874605 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1174 559 246 228 20 chr9 77201673 77201967 -46874205 - ORR1E LTR MaLR 0 359 5 2 1174 412 264 38 23 chr9 77202101 77202233 -46873939 + MER5A1 DNA MER1_type 32 165 -1 2 1174 507 69 0 0 chr9 77202396 77202468 -46873704 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1174 243 287 105 83 chr9 77202535 77202668 -46873504 - MIR SINE MIR -56 152 17 2 1174 229 236 10 82 chr9 77203309 77203406 -46872766 + Tigger8 DNA MER2_type 431 520 -146 2 1174 183 100 0 0 chr9 77203697 77203727 -46872445 + (C)n Simple_repeat Simple_repeat 1 30 0 2 1174 207 127 35 35 chr9 77204130 77204187 -46871985 + T-rich Low_complexity Low_complexity 3 59 0 2 1174 423 98 0 0 chr9 77204187 77204248 -46871924 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1174 236 365 10 10 chr9 77204308 77204405 -46871767 - MLT1M LTR MaLR -343 329 233 2 1174 587 231 70 9 chr9 77205075 77205245 -46870927 + ORR1B1 LTR MaLR 130 335 -59 2 1174 753 307 0 0 chr9 77205345 77205547 -46870625 - RMER1C Other Other -535 807 606 2 1174 633 277 78 58 chr9 77205547 77205931 -46870241 + RLTR12B LTR ERVK 1 300 -228 2 1174 417 274 35 11 chr9 77205973 77206111 -46870061 - RMER1B Other Other -781 285 164 2 1174 1074 66 37 0 chr9 77206373 77206509 -46869663 + B1_Mus1 SINE Alu 1 141 -7 2 1174 180 0 0 0 chr9 77206510 77206530 -46869642 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1174 2752 73 0 3 chr9 77206747 77207104 -46869068 + L1_Mus4 LINE L1 6217 6572 -64 2 1174 218 81 27 0 chr9 77207382 77207419 -46868753 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1174 389 20 20 0 chr9 77207912 77207962 -46868210 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1174 280 255 23 51 chr9 77208028 77208126 -46868046 + PB1D10 SINE Alu 1 99 -21 2 1174 4222 151 31 15 chr9 77208945 77209601 -46866571 + Lx LINE L1 5963 6624 -30 2 1174 398 20 20 0 chr9 77209601 77209652 -46866520 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1174 180 0 0 0 chr9 77209654 77209674 -46866498 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 1174 4222 151 31 15 chr9 77209674 77209695 -46866477 + Lx LINE L1 6625 6647 -7 2 1174 5607 55 7 0 chr9 77209803 77210510 -46865662 - L1_Mur1 LINE L1 -1290 4596 3885 2 1174 579 329 152 30 chr9 77210629 77211030 -46865142 - LTR33C LTR ERVL -19 610 161 2 1174 405 0 0 0 chr9 77211232 77211277 -46864895 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1174 195 129 0 0 chr9 77212281 77212312 -46863860 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 2 1174 249 284 45 0 chr9 77212321 77212388 -46863784 - ID4_ SINE ID -6 77 8 2 1174 2763 98 14 44 chr9 77212470 77212898 -46863274 - RLTR9F LTR ERVK 0 415 1 2 1174 693 153 0 0 chr9 77213898 77214022 -46862150 + CT-rich Low_complexity Low_complexity 2 125 0 2 1174 342 0 0 0 chr9 77215025 77215063 -46861109 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1174 489 299 74 7 chr9 77215095 77215230 -46860942 - B4A SINE B4 -116 176 33 2 1174 231 128 0 25 chr9 77215226 77215266 -46860906 + RMER17B LTR ERVK 175 213 -745 2 1174 928 148 19 52 chr9 77215259 77215472 -46860700 - RMER17B LTR ERVK -570 388 183 2 1174 267 313 8 34 chr9 77217686 77217805 -46858367 + (TATATG)n Simple_repeat Simple_repeat 1 116 0 2 1174 311 274 197 50 chr9 77218213 77218574 -46857598 + L1MC4 LINE L1 5254 5667 -2215 2 1174 524 287 102 78 chr9 77218973 77219472 -46856700 + Lx8 LINE L1 6961 7471 -2 3 1174 523 327 95 25 chr9 77220334 77220660 -46855512 + L1MC4 LINE L1 6659 7007 -1035 2 1174 283 261 85 28 chr9 77220858 77220978 -46855194 + MLT1A0 LTR MaLR 184 317 -73 3 1174 235 354 65 30 chr9 77221138 77221307 -46854865 + L1MC4 LINE L1 7166 7340 -702 2 1174 218 267 0 0 chr9 77222177 77222237 -46853935 + CT-rich Low_complexity Low_complexity 1 60 0 3 1174 308 291 6 6 chr9 77222817 77222976 -46853196 + (CA)n Simple_repeat Simple_repeat 2 160 0 3 1174 533 138 0 31 chr9 77222976 77223103 -46853069 + CT-rich Low_complexity Low_complexity 1 123 0 3 1174 258 32 0 0 chr9 77223172 77223203 -46852969 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1174 586 224 8 8 chr9 77224256 77224382 -46851790 + ID_B1 SINE B4 92 217 -7 3 1174 1962 14 0 0 chr9 77226289 77226505 -46849667 + L1Md_T LINE L1 5371 5586 -297 3 1174 9176 5 0 0 chr9 77226505 77227501 -46848671 + L1Md_T LINE L1 5587 6582 0 3 1174 225 0 0 0 chr9 77227544 77227569 -46848603 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1174 231 61 0 0 chr9 77227939 77227972 -46848200 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 3 1174 1737 57 31 0 chr9 77227980 77228208 -46847964 + L1_Mus3 LINE L1 6400 6634 -4 3 1174 720 23 0 0 chr9 77228507 77228593 -46847579 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 1174 257 290 43 0 chr9 77228813 77228882 -46847290 + B3 SINE B2 1 72 -144 3 1174 441 289 64 51 chr9 77229057 77229214 -46846958 + RSINE1 SINE B4 7 165 0 3 1174 230 309 220 7 chr9 77229289 77229439 -46846733 + MIRc SINE MIR 38 219 -49 3 1174 1296 84 0 0 chr9 77229797 77229976 -46846196 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 1174 492 129 0 0 chr9 77230103 77230204 -46845968 + (TG)n Simple_repeat Simple_repeat 2 102 0 3 1174 2821 188 41 33 chr9 77230350 77230960 -46845212 + RLTR18 LTR ERVK 2 616 0 3 1174 23 0 0 0 chr9 77231067 77231090 -46845082 + AT_rich Low_complexity Low_complexity 1 23 0 3 1174 538 150 0 57 chr9 77231683 77231789 -46844383 + PB1D10 SINE Alu 18 117 0 3 1174 252 0 0 0 chr9 77232086 77232114 -46844058 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1174 945 90 0 0 chr9 77232940 77233073 -46843099 + (TC)n Simple_repeat Simple_repeat 1 133 0 3 1174 435 269 129 43 chr9 77234005 77234168 -46842004 - Lx7 LINE L1 -375 7321 7145 3 1174 459 0 0 0 chr9 77234509 77234560 -46841612 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1174 541 129 20 10 chr9 77234562 77234664 -46841508 + GA-rich Low_complexity Low_complexity 3 105 0 3 1174 458 294 81 49 chr9 77235184 77235492 -46840680 - MER33 DNA MER1_type -4 320 3 3 1174 423 0 0 0 chr9 77237125 77237172 -46839000 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1174 689 272 112 54 chr9 77237746 77238022 -46838150 + B4A SINE B4 1 292 0 3 1174 1120 266 22 51 chr9 77239075 77239307 -46836865 - ORR1D2 LTR MaLR -65 305 81 3 1174 2223 159 62 3 chr9 77239307 77239679 -46836493 + ORR1B1 LTR MaLR 1 394 0 3 1174 1120 266 22 51 chr9 77239679 77239759 -46836413 - ORR1D2 LTR MaLR -290 80 2 3 1174 572 40 0 13 chr9 77240015 77240091 -46836081 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 3 1174 596 178 152 0 chr9 77240091 77240209 -46835963 - B1_Mur2 SINE Alu -12 137 2 3 1174 219 103 0 0 chr9 77240268 77240307 -46835865 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1174 1453 241 108 0 chr9 77240335 77240708 -46835464 - MTD LTR MaLR -16 403 3 3 1174 268 233 151 32 chr9 77241276 77241369 -46834803 - MER5A DNA MER1_type -85 104 1 3 1174 441 0 0 0 chr9 77241463 77241512 -46834660 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1174 387 0 0 0 chr9 77241512 77241554 -46834618 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1174 324 214 0 71 chr9 77241554 77241635 -46834537 + ID4 SINE ID 18 93 -59 3 1174 386 246 14 48 chr9 77241781 77241898 -46834274 - PB1D10 SINE Alu -2 118 6 3 1174 342 297 87 0 chr9 77241857 77241995 -46834177 + LTR52 LTR ERVL 13 162 -259 3 1174 926 167 0 6 chr9 77243188 77243233 -46832939 + polypurine Low_complexity Low_complexity 1 45 0 3 1174 1106 122 0 6 chr9 77243233 77243414 -46832758 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1174 926 167 0 6 chr9 77243414 77243549 -46832623 + polypurine Low_complexity Low_complexity 46 180 0 3 1174 329 145 16 0 chr9 77243557 77243619 -46832553 + GA-rich Low_complexity Low_complexity 3 65 0 3 1174 231 203 22 122 chr9 77243644 77243734 -46832438 + PB1 SINE Alu 43 123 -4 3 1174 190 330 0 48 chr9 77243769 77243874 -46832298 - L2 LINE L2 -1022 2397 2298 3 1174 1132 263 83 19 chr9 77244326 77244686 -46831486 + Lx8 LINE L1 7083 7465 -8 3 1174 321 135 0 0 chr9 77245882 77245934 -46830238 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 3 1174 32 26 0 0 chr9 77245966 77246005 -46830167 + AT_rich Low_complexity Low_complexity 1 39 0 3 1174 437 200 41 21 chr9 77246316 77246413 -46829759 + RSINE1 SINE B4 30 128 -37 3 1174 518 0 16 0 chr9 77246427 77246489 -46829683 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1174 189 0 0 0 chr9 77246542 77246563 -46829609 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1174 987 163 22 17 chr9 77247587 77247768 -46828404 + URR1A DNA MER1_type 44 225 -1 3 1174 508 291 62 48 chr9 77247768 77247803 -46828369 - CYRA11_Mm Unknown Y-chromosome -446 171 134 3 1174 1609 295 51 72 chr9 77247803 77247994 -46828178 + Lx8 LINE L1 6792 6969 -504 3 1174 1232 93 66 0 chr9 77247994 77248176 -46827996 + B2_Mm2 SINE B2 2 195 0 3 1174 1609 295 51 72 chr9 77248176 77248188 -46827984 + Lx8 LINE L1 6970 6971 -502 3 1174 7419 33 19 1 chr9 77248188 77249072 -46827100 + L1Md_F2 LINE L1 5682 6581 -1 3 1174 1609 295 51 72 chr9 77249072 77249429 -46826743 + Lx8 LINE L1 6972 7342 -131 3 1174 240 59 0 0 chr9 77249429 77249463 -46826709 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 3 1174 1609 295 51 72 chr9 77249463 77249590 -46826582 + Lx8 LINE L1 7343 7466 -7 3 1174 4510 10 2 0 chr9 77249687 77250179 -46825993 + MT2_Mm LTR ERVL 1 493 0 3 1174 1848 138 29 62 chr9 77250280 77250620 -46825552 - ORR1A4 LTR MaLR 0 329 1 3 1174 256 303 32 43 chr9 77250835 77250928 -46825244 + ORR1E LTR MaLR 1 92 -287 3 1174 390 296 139 30 chr9 77250989 77251263 -46824909 + ORR1E LTR MaLR 64 368 -2 3 1174 960 244 107 51 chr9 77251647 77252001 -46824171 - ORR1D1 LTR MaLR 0 374 1 3 1174 206 271 153 20 chr9 77252609 77252707 -46823465 + L2a LINE L2 3316 3426 0 3 1174 1014 157 0 0 chr9 77252792 77252970 -46823202 + CT-rich Low_complexity Low_complexity 1 178 0 3 1174 186 43 0 0 chr9 77252977 77253000 -46823172 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 3 1174 249 33 0 0 chr9 77253000 77253030 -46823142 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 3 1174 256 325 93 8 chr9 77253609 77253727 -46822445 + B1F1 SINE Alu 1 128 -21 3 1174 1080 80 7 0 chr9 77254215 77254352 -46821820 + B1_Mus1 SINE Alu 1 138 -10 3 1174 186 43 0 0 chr9 77254352 77254375 -46821797 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1174 305 348 55 5 chr9 77255048 77255250 -46820922 + L1M5 LINE L1 3479 3690 -2456 3 1174 305 150 39 29 chr9 77255601 77255704 -46820468 + (CA)n Simple_repeat Simple_repeat 2 105 0 3 1174 180 0 0 0 chr9 77255707 77255727 -46820445 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 1174 515 343 112 7 chr9 77256039 77256324 -46819848 - MLT2C1 LTR ERVL -70 327 13 3 1174 228 67 0 0 chr9 77256505 77256535 -46819637 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1174 266 323 151 25 chr9 77256624 77256783 -46819389 - LTR87 LTR ERVL? -111 513 335 3 1174 415 288 15 8 chr9 77256831 77256964 -46819208 + B1_Mur3 SINE Alu 1 134 -15 3 1174 669 13 0 0 chr9 77257143 77257221 -46818951 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 1174 21 0 0 0 chr9 77257603 77257624 -46818548 + AT_rich Low_complexity Low_complexity 1 21 0 3 1174 332 269 169 54 chr9 77257847 77258220 -46817952 + L1ME3B LINE L1 5703 6118 -122 3 1174 201 39 0 0 chr9 77259080 77259106 -46817066 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 3 1174 321 278 0 0 chr9 77259311 77259383 -46816789 + ID4 SINE ID 7 78 -5 3 1174 425 358 57 70 chr9 77259582 77259952 -46816220 - LTR78 LTR ERV1 -279 1025 661 3 1174 531 188 17 14 chr9 77259941 77260057 -46816115 - B1_Mur1 SINE Alu -1 148 17 3 1174 1536 22 0 0 chr9 77260932 77261112 -46815060 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1174 189 0 0 0 chr9 77261113 77261134 -46815038 + (CAGG)n Simple_repeat Simple_repeat 2 22 0 3 1174 356 306 107 20 chr9 77261747 77261897 -46814275 + MER58A DNA MER1_type 28 190 -34 3 1174 4173 41 10 8 chr9 77262390 77262910 -46813262 - L1_Mus3 LINE L1 -1 6637 6117 3 1174 1766 76 34 0 chr9 77262910 77263146 -46813026 + L1_Mus3 LINE L1 5904 6147 -491 3 1174 528 229 62 44 chr9 77265005 77265049 -46811123 - RSINE1 SINE B4 0 165 124 3 1174 954 117 0 0 chr9 77265049 77265228 -46810944 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 1174 528 229 62 44 chr9 77265228 77265343 -46810829 - RSINE1 SINE B4 -42 123 3 3 1174 516 93 0 0 chr9 77266221 77266296 -46809876 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1174 609 291 26 26 chr9 77266313 77266465 -46809707 - B4A SINE B4 -131 161 10 3 1174 693 192 83 15 chr9 77266649 77266781 -46809391 + B1_Mur4 SINE Alu 1 141 -9 3 1174 883 276 34 56 chr9 77268241 77268772 -46807400 + RLTR11A2 LTR ERVK 1 494 -34 3 1174 2328 194 45 82 chr9 77268889 77269440 -46806732 + RMER5 LTR ERV1 1 531 -3 3 1174 531 241 201 0 chr9 77271330 77271504 -46804668 + B3 SINE B2 1 209 -7 3 1174 291 182 0 120 chr9 77271520 77271587 -46804585 + MTD LTR MaLR 21 81 -340 3 1174 996 167 0 0 chr9 77271587 77271737 -46804435 + B1_Mur4 SINE Alu 1 150 0 3 1174 1303 121 16 0 chr9 77271783 77271973 -46804199 + B2_Mm2 SINE B2 3 195 0 3 1174 986 210 244 4 chr9 77271975 77272197 -46803975 + MTD LTR MaLR 68 343 -76 3 1174 644 0 13 0 chr9 77272197 77272273 -46803899 + (GAAA)n Simple_repeat Simple_repeat 1 77 0 3 1174 986 245 135 62 chr9 77272273 77272350 -46803822 + MTD LTR MaLR 282 386 -33 3 1174 342 0 0 0 chr9 77272601 77272639 -46803533 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1174 373 280 109 35 chr9 77273273 77273447 -46802725 + MER5A DNA MER1_type 1 187 -2 4 1174 304 171 36 114 chr9 77276193 77276286 -46799886 + B1F SINE Alu 14 96 -21 4 1174 213 240 0 0 chr9 77277411 77277461 -46798711 + A-rich Low_complexity Low_complexity 1 50 0 4 1174 535 228 77 82 chr9 77280999 77281195 -46794977 + B3A SINE B2 1 195 -3 4 1174 204 40 0 0 chr9 77281199 77281224 -46794948 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1174 297 0 0 0 chr9 77282284 77282317 -46793855 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1174 476 172 26 40 chr9 77283494 77283598 -46792574 + MTD LTR MaLR 294 405 -14 4 1174 1301 220 71 57 chr9 77283598 77283965 -46792207 + MTD-int LTR MaLR 1 372 -886 4 1174 731 214 60 7 chr9 77283969 77284165 -46792007 - MTD LTR MaLR -1 418 204 4 1174 192 97 0 0 chr9 77284187 77284218 -46791954 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 4 1174 195 42 0 0 chr9 77284237 77284261 -46791911 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 1174 854 123 109 7 chr9 77284261 77284408 -46791764 - B2_Mm2 SINE B2 -33 162 1 4 1174 877 192 114 20 chr9 77284408 77284610 -46791562 - MTD LTR MaLR -194 225 5 4 1174 1619 246 146 72 chr9 77284904 77285628 -46790544 + MTD-int LTR MaLR 434 1258 0 4 1174 1231 231 160 11 chr9 77285678 77286032 -46790140 + MTD LTR MaLR 13 419 0 4 1174 304 274 0 27 chr9 77286332 77286407 -46789765 + ID4 SINE ID 2 74 -9 4 1174 21 0 0 0 chr9 77286532 77286553 -46789619 + AT_rich Low_complexity Low_complexity 1 21 0 4 1174 495 48 0 0 chr9 77287830 77287892 -46788280 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1174 234 0 0 0 chr9 77288318 77288344 -46787828 + (TTA)n Simple_repeat Simple_repeat 1 26 0 4 1174 911 168 55 119 chr9 77293569 77293805 -46782367 - URR1B DNA MER1_type 0 225 5 4 1174 480 77 0 0 chr9 77294332 77294397 -46781775 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1174 908 140 0 0 chr9 77294414 77294550 -46781622 - B1_Mus2 SINE Alu -1 146 11 4 1174 541 324 128 4 chr9 77295197 77295439 -46780733 - B4 SINE B4 -11 281 10 4 1174 189 0 0 0 chr9 77301004 77301025 -46775147 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1174 38 22 0 0 chr9 77301886 77301931 -46774241 + AT_rich Low_complexity Low_complexity 1 45 0 4 1174 610 200 0 0 chr9 77302240 77302345 -46773827 + B1_Mur2 SINE Alu 36 140 -9 4 1174 225 248 61 122 chr9 77302244 77302359 -46773813 + B4 SINE B4 125 232 -60 4 1174 203 268 0 0 chr9 77302359 77302400 -46773772 + polypurine Low_complexity Low_complexity 2 42 0 4 1174 441 0 0 0 chr9 77302795 77302844 -46773328 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 4 1174 887 240 188 15 chr9 77303215 77303609 -46772563 + Lx8 LINE L1 6995 7456 -17 4 1174 712 275 33 24 chr9 77303636 77303848 -46772324 + B3 SINE B2 2 215 -1 4 1174 570 250 65 43 chr9 77306333 77306471 -46769701 + RSINE1 SINE B4 6 146 -19 4 1174 1988 218 40 26 chr9 77306477 77306976 -46769196 + RLTR11A2 LTR ERVK 7 512 -15 4 1174 203 235 0 0 chr9 77307064 77307115 -46769057 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4 1174 1244 86 0 49 chr9 77307585 77307769 -46768403 - B2_Mm2 SINE B2 -19 176 2 4 1174 639 31 0 50 chr9 77307945 77308046 -46768126 + L1Md_F3 LINE L1 6475 6570 -14 4 1174 648 237 115 6 chr9 77308052 77308226 -46767946 + B3 SINE B2 19 211 -5 4 1174 342 0 0 0 chr9 77308512 77308550 -46767622 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1174 744 227 67 48 chr9 77308858 77308884 -46767288 - B3 SINE B2 -4 212 188 4 1174 360 0 0 0 chr9 77308884 77308924 -46767248 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1174 837 227 67 48 chr9 77308924 77309105 -46767067 - B3A SINE B2 -29 187 1 4 1174 934 201 25 5 chr9 77309406 77309606 -46766566 + Lx9 LINE L1 6413 6616 -1028 4 1174 928 284 40 76 chr9 77309698 77310135 -46766037 + Lx9 LINE L1 6886 7435 -209 4 1174 486 0 0 0 chr9 77310135 77310189 -46765983 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 4 1174 863 329 47 70 chr9 77310189 77310232 -46765940 + Lx9 LINE L1 7325 7361 -112 4 1174 501 17 0 0 chr9 77310232 77310290 -46765882 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1174 863 329 47 70 chr9 77310290 77310409 -46765763 + Lx9 LINE L1 7362 7472 -1 4 1174 534 31 0 0 chr9 77310632 77310696 -46765476 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1174 838 254 11 16 chr9 77310702 77310886 -46765286 - B3 SINE B2 -31 185 3 4 1174 291 280 0 0 chr9 77311476 77311569 -46764603 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 1174 529 342 102 26 chr9 77312515 77313053 -46763119 - L1MB7 LINE L1 -160 6024 5446 4 1174 323 78 0 19 chr9 77313305 77313357 -46762815 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1174 283 319 154 57 chr9 77313480 77313726 -46762446 - L4 LINE RTE -205 1824 1555 4 1174 436 219 131 25 chr9 77314569 77314691 -46761481 - B1_Mur1 SINE Alu -14 135 1 4 1174 1018 195 62 20 chr9 77314979 77315265 -46760907 + RLTR12A LTR ERVK 248 564 -4 4 1174 612 233 140 40 chr9 77315372 77315638 -46760534 - L1_Rod LINE L1 -493 5393 5081 4 1174 323 313 94 13 chr9 77315639 77315781 -46760391 + B3 SINE B2 30 184 -32 4 1174 330 87 0 0 chr9 77315781 77315827 -46760345 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1174 233 0 62 0 chr9 77315880 77315912 -46760260 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1174 223 266 197 61 chr9 77315958 77316090 -46760082 + B4A SINE B4 2 151 -141 4 1174 529 235 8 0 chr9 77316781 77316900 -46759272 + PB1D9 SINE Alu 1 120 0 4 1174 22 0 0 0 chr9 77317195 77317217 -46758955 + AT_rich Low_complexity Low_complexity 1 22 0 4 1174 432 105 0 0 chr9 77317317 77317393 -46758779 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1174 221 343 70 48 chr9 77317776 77317963 -46758209 + MIR3 SINE MIR 4 194 -14 4 1174 342 0 0 0 chr9 77319483 77319521 -46756651 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1174 324 0 0 0 chr9 77319521 77319556 -46756616 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1174 423 244 131 57 chr9 77319569 77319691 -46756481 - RSINE1 SINE B4 -32 133 3 4 1174 660 330 38 24 chr9 77320201 77320571 -46755601 + MERVL_2A-int LTR ERVL 1125 1499 -4262 4 1174 1160 250 24 7 chr9 77320614 77320904 -46755268 + MERVL_2A-int LTR ERVL 1523 1817 -3897 4 1174 1739 239 38 7 chr9 77320978 77321403 -46754769 + MERVL_2A-int LTR ERVL 2891 3328 -2433 4 1174 1781 254 96 44 chr9 77321405 77322001 -46754171 + MERVL_2A-int LTR ERVL 3770 4396 -1365 4 1174 2782 259 81 25 chr9 77322038 77323082 -46753090 + MERVL_2A-int LTR ERVL 4365 5484 -1 4 1174 432 290 78 73 chr9 77323086 77323529 -46752643 + MT2A LTR ERVL 3 533 0 4 1174 608 263 97 55 chr9 77323536 77323774 -46752398 + L1MA4 LINE L1 5150 5417 -463 4 1174 186 43 0 0 chr9 77323774 77323797 -46752375 + (CATCC)n Simple_repeat Simple_repeat 2 24 0 4 1174 864 293 49 33 chr9 77323797 77324221 -46751951 + L1MA4 LINE L1 5418 5914 -386 4 1174 476 256 120 0 chr9 77324281 77324406 -46751766 + B1F1 SINE Alu 8 147 -2 4 1174 261 0 0 0 chr9 77327199 77327228 -46748944 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 4 1174 557 281 0 0 chr9 77329336 77329471 -46746701 + ID_B1 SINE B4 84 218 -6 4 1174 408 277 84 0 chr9 77331149 77331268 -46744904 - B3A SINE B2 -69 129 1 4 1174 886 226 123 31 chr9 77331989 77332217 -46743955 - MTD LTR MaLR 0 419 171 4 1175 298 380 10 10 chr9 77333378 77333479 -46742693 + PB1 SINE Alu 15 115 -12 4 1175 234 0 0 0 chr9 77334261 77334287 -46741885 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1175 229 261 30 30 chr9 77336124 77336191 -46739981 + MIRb SINE MIR 178 244 -24 4 1175 740 307 116 17 chr9 77336916 77337208 -46738964 + MLT1A0 LTR MaLR 43 363 -2 4 1175 187 402 110 0 chr9 77337349 77337476 -46738696 + MIRc SINE MIR 59 199 -69 4 1175 219 69 0 0 chr9 77337987 77338016 -46738156 + (TTCTG)n Simple_repeat Simple_repeat 1 29 0 4 1175 353 333 65 7 chr9 77338121 77338260 -46737912 + MLT2B1 LTR ERVL 6 152 -368 4 1175 4438 59 27 0 chr9 77338826 77339384 -46736788 - L1Md_F2 LINE L1 0 6582 6010 4 1175 30 27 0 0 chr9 77339766 77339803 -46736369 + AT_rich Low_complexity Low_complexity 1 37 0 4 1175 632 309 33 69 chr9 77340051 77340354 -46735818 + B4A SINE B4 1 292 0 4 1175 1475 63 5 21 chr9 77341107 77341301 -46734871 + B2_Mm2 SINE B2 2 192 -3 4 1175 1702 181 64 28 chr9 77341727 77342085 -46734087 + ORR1D1 LTR MaLR 1 371 -3 4 1175 272 278 94 17 chr9 77344219 77344336 -46731836 + MER5A1 DNA MER1_type 38 163 -3 4 1175 230 56 28 0 chr9 77346269 77346305 -46729867 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 4 1175 458 268 21 48 chr9 77346323 77346468 -46729704 + B1F1 SINE Alu 9 149 0 4 1175 1012 59 7 42 chr9 77346546 77346688 -46729484 + B1_Mus1 SINE Alu 1 137 -11 4 1175 464 302 0 0 chr9 77346764 77346870 -46729302 + PB1D10 SINE Alu 3 108 -9 4 1175 27 0 0 0 chr9 77347312 77347339 -46728833 + AT_rich Low_complexity Low_complexity 1 27 0 4 1175 22 56 0 0 chr9 77347517 77347553 -46728619 + AT_rich Low_complexity Low_complexity 1 36 0 4 1175 25 0 0 0 chr9 77347757 77347782 -46728390 + AT_rich Low_complexity Low_complexity 1 25 0 4 1175 438 20 0 0 chr9 77348264 77348315 -46727857 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1175 289 234 137 11 chr9 77348821 77348916 -46727256 + MTEa LTR MaLR 266 372 -7 4 1175 365 365 69 49 chr9 77349207 77349512 -46726660 + HAL1 LINE L1 1802 2112 -395 4 1175 875 205 202 27 chr9 77351700 77352072 -46724100 + L1MA4 LINE L1 4043 4476 -1667 4 1175 7578 83 7 30 chr9 77352301 77353384 -46722788 - L1_Mus1 LINE L1 -345 5538 4480 4 1175 7955 44 26 7 chr9 77353381 77354396 -46721776 + L1_Mus1 LINE L1 5538 6567 0 4 1175 455 263 82 136 chr9 77354402 77354842 -46721330 + L1MA4 LINE L1 4804 5219 -924 4 1175 976 274 28 46 chr9 77354975 77355300 -46720872 + Lx8 LINE L1 6095 6413 -1060 4 1175 352 265 113 9 chr9 77355296 77355457 -46720715 + L1MA4 LINE L1 5783 5957 -199 4 1175 295 297 71 117 chr9 77356257 77356497 -46719675 + B4A SINE B4 64 292 0 4 1175 432 276 26 42 chr9 77356516 77356709 -46719463 + L1MA7 LINE L1 6102 6291 0 4 1175 1491 309 148 16 chr9 77357581 77358333 -46717839 - MTE-int LTR MaLR -402 1178 328 4 1175 647 304 5 19 chr9 77358445 77358650 -46717522 - ID_B1 SINE B4 -22 202 1 4 1175 983 211 33 14 chr9 77359079 77359288 -46716884 + MTE-int LTR MaLR 1183 1395 -185 4 1175 266 236 153 0 chr9 77359288 77359360 -46716812 + B1_Mur3 SINE Alu 2 84 -65 4 1175 232 211 17 17 chr9 77359360 77359418 -46716754 + ORR1D-int LTR MaLR 1243 1300 -70 5 1175 612 140 0 0 chr9 77360720 77360827 -46715345 + (GGA)n Simple_repeat Simple_repeat 1 107 0 5 1175 632 296 49 38 chr9 77360855 77361143 -46715029 + B4A SINE B4 1 291 -1 5 1175 239 283 131 9 chr9 77361753 77361860 -46714312 - MIRb SINE MIR -34 234 115 5 1175 274 369 50 22 chr9 77362003 77362183 -46713989 + MIR SINE MIR 77 261 -1 5 1175 366 283 53 38 chr9 77363910 77364042 -46712130 - B4A SINE B4 -4 288 155 5 1175 536 273 48 36 chr9 77365323 77365490 -46710682 + MTD LTR MaLR 251 419 0 5 1175 315 279 67 60 chr9 77365508 77365657 -46710515 - MTD LTR MaLR -14 405 256 5 1175 484 269 75 0 chr9 77367034 77367168 -46709004 + B1F1 SINE Alu 6 149 0 5 1175 306 202 117 53 chr9 77367410 77367504 -46708668 + ORSL DNA Tip100 163 262 -13 5 1175 200 348 41 94 chr9 77367973 77368144 -46708028 + L3 LINE CR1 3349 3510 -979 5 1175 250 229 113 10 chr9 77368845 77368942 -46707230 - RMER15 LTR ERVL -17 558 452 5 1175 942 184 147 5 chr9 77369040 77369237 -46706935 + URR1B DNA MER1_type 1 225 0 5 1175 645 80 0 0 chr9 77369907 77369995 -46706177 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 5 1175 235 235 136 22 chr9 77371686 77371777 -46704395 - L2c LINE L2 -24 3363 3234 5 1175 189 0 0 0 chr9 77371918 77371939 -46704233 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1175 1226 34 0 13 chr9 77371939 77372089 -46704083 - B1_Mur3 SINE Alu 0 149 2 5 1175 225 108 0 0 chr9 77372211 77372248 -46703924 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 5 1175 215 135 0 26 chr9 77372485 77372523 -46703649 + (CACCC)n Simple_repeat Simple_repeat 5 41 0 5 1175 194 192 19 0 chr9 77374003 77374055 -46702117 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1175 180 143 29 0 chr9 77374327 77374362 -46701810 - L4 LINE RTE -1263 766 731 5 1175 286 331 87 39 chr9 77374380 77374556 -46701616 - MIRb SINE MIR -52 210 34 5 1175 1154 81 0 0 chr9 77374786 77374934 -46701238 + B1_Mus1 SINE Alu 1 148 0 5 1175 637 234 53 32 chr9 77375690 77375880 -46700292 + B3A SINE B2 1 194 -4 5 1175 219 44 67 0 chr9 77378200 77378245 -46697927 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 5 1175 1771 208 44 21 chr9 77378245 77378632 -46697540 + MTD LTR MaLR 13 408 -11 5 1175 525 16 0 0 chr9 77378781 77378843 -46697329 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1175 255 212 46 46 chr9 77379599 77379772 -46696400 + (CCCA)n Simple_repeat Simple_repeat 2 174 0 5 1175 210 120 37 116 chr9 77380256 77380445 -46695727 + (CACCT)n Simple_repeat Simple_repeat 4 177 0 5 1175 246 228 42 48 chr9 77380707 77380873 -46695299 + (CCCA)n Simple_repeat Simple_repeat 2 166 0 5 1175 477 0 0 0 chr9 77381104 77381157 -46695015 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1175 775 167 50 14 chr9 77381454 77381594 -46694578 + B1_Mus1 SINE Alu 1 145 -3 5 1175 338 280 66 25 chr9 77381694 77381815 -46694357 + ORR1E LTR MaLR 6 131 -228 5 1175 249 304 96 25 chr9 77381833 77381994 -46694178 + ORR1E LTR MaLR 204 374 -5 5 1175 278 279 69 84 chr9 77382521 77382664 -46693508 + MIR SINE MIR 5 145 -123 5 1175 182 257 118 26 chr9 77383847 77383923 -46692249 - MIR3 SINE MIR -6 202 120 5 1175 192 135 0 0 chr9 77384117 77384154 -46692018 + (CAGAGA)n Simple_repeat Simple_repeat 2 38 0 5 1175 661 277 49 70 chr9 77384156 77384443 -46691729 - B4A SINE B4 -20 272 1 5 1175 283 308 34 8 chr9 77385068 77385186 -46690986 - MIR SINE MIR -29 233 113 5 1175 212 136 133 17 chr9 77386239 77386299 -46689873 + RSINE1 SINE B4 99 165 0 5 1175 206 349 65 19 chr9 77387453 77387561 -46688611 + MIRb SINE MIR 110 222 -46 5 1175 231 248 219 0 chr9 77389121 77389226 -46686946 - L2a LINE L2 -24 3402 3275 5 1175 187 340 61 20 chr9 77389729 77389828 -46686344 + L2c LINE L2 3270 3372 -15 5 1175 26 93 0 0 chr9 77392456 77392531 -46683641 + GC_rich Low_complexity Low_complexity 1 75 0 5 1175 189 74 0 0 chr9 77394202 77394229 -46681943 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1175 1694 219 75 10 chr9 77394462 77394850 -46681322 - MTD LTR MaLR 0 419 7 5 1175 550 278 41 15 chr9 77394856 77395053 -46681119 - MTD LTR MaLR -56 363 162 5 1175 267 315 22 0 chr9 77395394 77395486 -46680686 + L1ME1 LINE L1 5489 5582 -658 5 1175 311 304 88 50 chr9 77395538 77395877 -46680295 + L1ME1 LINE L1 5694 6045 -134 5 1175 334 298 146 102 chr9 77395877 77396131 -46680041 + B4A SINE B4 28 292 0 5 1175 414 0 0 0 chr9 77396687 77396733 -46679439 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1175 928 294 19 51 chr9 77397003 77397376 -46678796 + RMER15 LTR ERVL 182 542 -33 5 1175 191 146 0 24 chr9 77397793 77397835 -46678337 + T-rich Low_complexity Low_complexity 4 44 0 5 1175 292 304 32 11 chr9 77398383 77398476 -46677696 + RSINE1 SINE B4 42 136 -29 5 1175 437 0 19 0 chr9 77398490 77398543 -46677629 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1175 25 0 0 0 chr9 77398543 77398568 -46677604 + AT_rich Low_complexity Low_complexity 1 25 0 5 1175 23 92 0 0 chr9 77398648 77398713 -46677459 + AT_rich Low_complexity Low_complexity 1 65 0 5 1175 25 102 0 0 chr9 77398746 77398834 -46677338 + AT_rich Low_complexity Low_complexity 1 88 0 5 1175 765 290 74 30 chr9 77399116 77399546 -46676626 - L1MA5 LINE L1 -375 5925 5477 5 1175 220 220 0 0 chr9 77399713 77399763 -46676409 + A-rich Low_complexity Low_complexity 5 54 0 5 1175 2734 306 101 31 chr9 77402134 77403765 -46672407 - L1_Mur3 LINE L1 -425 5455 3712 5 1175 603 0 0 0 chr9 77403766 77403833 -46672339 + (GA)n Simple_repeat Simple_repeat 1 67 0 5 1175 1240 216 48 24 chr9 77403838 77403961 -46672211 - RMER15 LTR ERVL 0 575 451 5 1175 207 88 0 0 chr9 77403961 77403995 -46672177 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 5 1175 1196 55 7 0 chr9 77404001 77404146 -46672026 - B1_Mm SINE Alu 0 147 2 5 1175 1240 216 48 24 chr9 77404146 77404351 -46671821 - RMER15 LTR ERVL -137 438 233 5 1175 183 113 57 0 chr9 77406228 77406281 -46669891 + (TTA)n Simple_repeat Simple_repeat 3 58 0 5 1175 34 42 0 0 chr9 77406281 77406329 -46669843 + AT_rich Low_complexity Low_complexity 1 48 0 5 1175 410 310 231 21 chr9 77407265 77407598 -46668574 + MLT1F2 LTR MaLR 139 541 -28 5 1175 802 229 18 6 chr9 77407990 77408177 -46667995 + B3A SINE B2 2 182 -34 5 1175 1687 159 84 3 chr9 77408187 77408509 -46667663 + ORR1B1 LTR MaLR 1 348 -46 5 1175 506 299 25 68 chr9 77408748 77408985 -46667187 - Lx8 LINE L1 -89 7384 7158 5 1175 700 310 51 25 chr9 77409095 77409370 -46666802 - B4A SINE B4 -7 285 4 5 1175 229 259 0 17 chr9 77410111 77410170 -46666002 + CT-rich Low_complexity Low_complexity 3 60 0 5 1175 607 238 55 95 chr9 77410180 77410380 -46665792 - ID_B1 SINE B4 -28 196 5 5 1175 2463 174 118 19 chr9 77410818 77411335 -46664837 - RLTR20D LTR ERVK 0 568 1 5 1175 203 56 83 0 chr9 77411482 77411518 -46664654 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1175 4895 69 1 0 chr9 77411640 77412374 -46663798 - L1_Mus1 LINE L1 -569 5997 5263 5 1175 4582 61 11 2 chr9 77412374 77412947 -46663225 + L1_Mus1 LINE L1 5989 6566 -1 5 1175 565 273 82 52 chr9 77413250 77413578 -46662594 - RLTR15 LTR ERVK -21 338 1 5 1175 825 143 0 21 chr9 77414007 77414150 -46662022 + B2_Mm2 SINE B2 1 140 -55 5 1175 783 76 0 25 chr9 77415545 77415660 -46660512 + B1_Mus1 SINE Alu 29 140 -8 5 1175 882 0 0 0 chr9 77415660 77415758 -46660414 + (GAA)n Simple_repeat Simple_repeat 2 99 0 5 1175 711 270 123 25 chr9 77415766 77416077 -46660095 + L1_Mur2 LINE L1 5473 5800 -77 5 1175 189 147 0 0 chr9 77416108 77416142 -46660030 + (CATA)n Simple_repeat Simple_repeat 3 36 0 5 1175 273 341 8 23 chr9 77417143 77417275 -46658897 - MER20 DNA MER1_type 0 219 90 5 1175 590 252 13 13 chr9 77417290 77417447 -46658725 + MTD LTR MaLR 62 218 -201 5 1175 653 125 88 18 chr9 77417441 77417555 -46658617 + B1_Mus2 SINE Alu 13 134 -13 5 1175 338 0 0 23 chr9 77417555 77417598 -46658574 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 5 1175 502 253 180 4 chr9 77417615 77417781 -46658391 + MTD LTR MaLR 201 398 -21 5 1175 551 278 67 34 chr9 77418519 77418668 -46657504 - RSINE1 SINE B4 -6 159 6 5 1175 238 323 98 0 chr9 77419396 77419529 -46656643 + MER103 DNA DNA 1 146 -20 5 1175 414 227 51 10 chr9 77420273 77420371 -46655801 + L1_Rod LINE L1 4080 4181 -1666 5 1175 2817 278 116 68 chr9 77420371 77420762 -46655410 + Lx8 LINE L1 4078 4436 -1444 5 1175 1435 78 5 5 chr9 77420762 77420954 -46655218 + B2_Mm1t SINE B2 1 192 -1 5 1175 2817 278 116 68 chr9 77420954 77420989 -46655183 + Lx8 LINE L1 4437 4467 -1413 5 1175 1225 168 22 18 chr9 77420989 77421213 -46654959 + URR1B DNA MER1_type 1 225 0 5 1175 2817 278 116 68 chr9 77421213 77422439 -46653733 + Lx8 LINE L1 4468 5811 -69 5 1175 3217 132 44 37 chr9 77422439 77422721 -46653451 + RLTR20A2 LTR ERVK 1 279 -299 5 1175 1216 48 0 0 chr9 77422721 77422868 -46653304 + B1_Mm SINE Alu 1 147 0 5 1175 3217 132 44 37 chr9 77422868 77423082 -46653090 + RLTR20A2 LTR ERVK 280 479 -99 5 1175 450 0 0 0 chr9 77423082 77423132 -46653040 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1175 3217 132 44 37 chr9 77423132 77423208 -46652964 + RLTR20A2 LTR ERVK 480 577 -1 5 1175 286 201 17 9 chr9 77423217 77423312 -46652860 + Lx8 LINE L1 5783 5918 -1555 5 1175 667 255 38 0 chr9 77423327 77423484 -46652688 - B3 SINE B2 0 216 54 5 1175 1362 301 148 15 chr9 77423615 77424161 -46652011 + Lx8 LINE L1 6103 6721 -752 5 1175 2205 266 49 45 chr9 77424303 77425031 -46651141 + Lx8 LINE L1 6704 7432 -41 5 1175 288 0 0 0 chr9 77425031 77425063 -46651109 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1175 2205 266 49 45 chr9 77425063 77425096 -46651076 + Lx8 LINE L1 7433 7467 -6 5 1175 222 351 0 0 chr9 77425220 77425297 -46650875 + ID4 SINE ID 2 78 -5 5 1175 408 20 0 0 chr9 77425506 77425555 -46650617 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1175 492 310 61 72 chr9 77425602 77425866 -46650306 - B4A SINE B4 -29 263 3 5 1175 1200 61 0 0 chr9 77426087 77426234 -46649938 + B1_Mus2 SINE Alu 1 147 0 5 1175 216 148 0 36 chr9 77426234 77426285 -46649887 + A-rich Low_complexity Low_complexity 1 50 0 5 1175 746 148 41 0 chr9 77426330 77426452 -46649720 + B1_Mur4 SINE Alu 3 129 -21 6 1175 342 123 0 2 chr9 77426726 77426785 -46649387 + B2_Mm2 SINE B2 3 60 -138 6 1175 1500 134 9 0 chr9 77426789 77427006 -46649166 - Lx7 LINE L1 -786 6910 6692 6 1175 184 139 28 0 chr9 77427768 77427804 -46648368 + L3 LINE CR1 4430 4466 -23 6 1175 1684 179 92 102 chr9 77428258 77428736 -46647436 + RMER19B LTR ERVK 1 473 -429 6 1175 239 283 103 46 chr9 77428789 77428891 -46647281 - LTR16D2 LTR ERVL -283 289 181 6 1175 1066 217 150 30 chr9 77428891 77429224 -46646948 - MTEb LTR MaLR -3 376 4 6 1175 239 283 103 46 chr9 77429224 77429295 -46646877 - LTR16D2 LTR ERVL -392 180 107 6 1175 1209 98 0 0 chr9 77429969 77430143 -46646029 + (TTCTCC)n Simple_repeat Simple_repeat 6 179 0 6 1175 523 153 18 9 chr9 77430143 77430255 -46645917 + CT-rich Low_complexity Low_complexity 3 115 0 6 1175 204 125 0 0 chr9 77430421 77430453 -46645719 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1175 1055 158 5 0 chr9 77432150 77432334 -46643838 + URR1B DNA MER1_type 36 220 -5 6 1175 415 250 11 0 chr9 77432999 77433091 -46643081 - RSINE1 SINE B4 -60 105 13 6 1175 23 0 0 0 chr9 77433319 77433342 -46642830 + AT_rich Low_complexity Low_complexity 1 23 0 6 1175 476 201 27 73 chr9 77433408 77433428 -46642744 + CYRA11_Mm Unknown Y-chromosome 158 170 -447 6 1175 1042 130 25 40 chr9 77433428 77433560 -46642612 - URR1A DNA MER1_type 0 226 96 6 1175 2322 193 64 113 chr9 77433560 77434203 -46641969 + RMER19C LTR ERVK 1 611 0 6 1175 1042 130 25 40 chr9 77434203 77434270 -46641902 - URR1A DNA MER1_type -131 95 30 6 1175 311 315 100 11 chr9 77434486 77434666 -46641506 + MER5C DNA MER1_type 37 232 -81 6 1175 448 272 99 0 chr9 77434806 77434968 -46641204 - L1M5 LINE L1 -691 5549 5372 6 1175 246 232 45 35 chr9 77435855 77435954 -46640218 - ORR1E LTR MaLR -5 369 268 6 1175 2258 79 6 3 chr9 77435995 77436313 -46639859 - ORR1A2 LTR MaLR -8 319 1 6 1175 260 367 8 16 chr9 77436463 77436585 -46639587 - ORR1E LTR MaLR -238 121 1 6 1175 302 300 73 42 chr9 77436602 77436992 -46639180 - L1ME2z LINE L1 -244 5929 5534 6 1175 286 322 23 11 chr9 77437018 77437106 -46639066 + B4A SINE B4 148 236 -56 6 1175 1083 228 136 7 chr9 77437396 77437705 -46638467 + MLT1A0 LTR MaLR 17 365 0 6 1175 1052 58 58 0 chr9 77438615 77438753 -46637419 - B1_Mm SINE Alu 0 147 2 6 1175 315 0 0 0 chr9 77440977 77441012 -46635160 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 6 1175 377 268 81 18 chr9 77441570 77441702 -46634470 + L1MEd LINE L1 583 701 -5418 6 1175 486 0 0 0 chr9 77441720 77441774 -46634398 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1175 882 52 0 0 chr9 77442077 77442192 -46633980 - B1_Mm SINE Alu -32 115 1 6 1175 443 188 0 138 chr9 77442080 77442210 -46633962 - MT2B LTR ERVL -337 264 153 6 1175 387 56 0 0 chr9 77442292 77442346 -46633826 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1175 670 235 37 48 chr9 77442437 77442625 -46633547 + ORR1D2 LTR MaLR 1 186 -184 6 1175 370 164 0 35 chr9 77442640 77442754 -46633418 + (TCTCTG)n Simple_repeat Simple_repeat 2 111 0 6 1175 186 43 0 0 chr9 77443639 77443662 -46632510 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 6 1175 318 43 0 0 chr9 77443662 77443709 -46632463 + Lx3_Mus LINE L1 6963 7009 0 6 1175 250 167 0 32 chr9 77444637 77444699 -46631473 + GA-rich Low_complexity Low_complexity 1 60 0 6 1175 1224 289 57 3 chr9 77445144 77445494 -46630678 - RMER1B Other Other -689 377 9 6 1175 1863 149 55 37 chr9 77445540 77445943 -46630229 - RLTR20B3 LTR ERVK -3 574 165 6 1175 1147 75 0 7 chr9 77445983 77446131 -46630041 + B1_Mus1 SINE Alu 1 147 -1 6 1175 288 0 0 0 chr9 77446131 77446163 -46630009 + (TAA)n Simple_repeat Simple_repeat 2 33 0 6 1175 458 181 101 86 chr9 77446164 77446303 -46629869 - RLTR20B3 LTR ERVK -400 160 20 6 1175 1379 134 0 14 chr9 77446558 77446778 -46629394 - RLTR28B LTR ERVL -264 217 1 6 1175 23 33 0 0 chr9 77447104 77447134 -46629038 + AT_rich Low_complexity Low_complexity 1 30 0 6 1175 1127 145 108 20 chr9 77448861 77449065 -46627107 + URR1A DNA MER1_type 5 226 0 6 1175 266 316 84 22 chr9 77449482 77449660 -46626512 - L1MEd LINE L1 -5448 671 483 6 1175 287 250 43 114 chr9 77451011 77451028 -46625144 + MT2B LTR ERVL 149 155 -446 6 1175 775 161 7 1 chr9 77451028 77451171 -46625001 + B1_Mur4 SINE Alu 1 143 -7 6 1175 1474 269 48 27 chr9 77451349 77451869 -46624303 - L1_Rod LINE L1 -241 5606 5076 6 1175 2100 141 59 0 chr9 77451869 77452224 -46623948 - RLTR14 LTR ERV1 0 382 7 6 1175 2447 241 59 44 chr9 77452249 77453152 -46623020 - L1_Rod LINE L1 -768 5079 4164 6 1175 2608 178 38 17 chr9 77453153 77453223 -46622949 - RLTR20B1 LTR ERVK -24 539 472 6 1175 390 21 0 0 chr9 77453223 77453270 -46622902 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1175 2608 178 38 17 chr9 77453270 77453726 -46622446 - RLTR20B1 LTR ERVK -92 471 2 6 1175 1317 261 34 18 chr9 77453727 77454109 -46622063 - L1_Rod LINE L1 -1703 4144 3757 6 1175 814 290 153 35 chr9 77454090 77454941 -46621231 + Lx9 LINE L1 5652 6715 -929 6 1175 981 32 0 0 chr9 77454946 77455070 -46621102 - B1_Mus2 SINE Alu -12 135 12 6 1175 1123 261 7 37 chr9 77455128 77455426 -46620746 + Lx9 LINE L1 6856 7144 -500 6 1175 221 180 57 26 chr9 77455471 77455665 -46620507 + (TA)n Simple_repeat Simple_repeat 1 199 0 6 1175 344 226 116 39 chr9 77456173 77456302 -46619870 - RSINE1 SINE B4 -24 141 3 6 1175 754 196 42 35 chr9 77456460 77456603 -46619569 - B1_Mur2 SINE Alu -5 144 1 6 1175 258 349 57 117 chr9 77457097 77457344 -46618828 + MER21B LTR ERV1 21 252 -611 6 1175 297 0 0 0 chr9 77457496 77457529 -46618643 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1175 1946 109 16 34 chr9 77457825 77458011 -46618161 - Lx2 LINE L1 -561 6436 6254 6 1175 3283 28 43 0 chr9 77458011 77458405 -46617767 + IAPLTR2a LTR ERVK 1 411 0 6 1175 1946 109 16 34 chr9 77458405 77458540 -46617632 - Lx2 LINE L1 -744 6253 6121 6 1175 987 103 101 18 chr9 77458734 77458773 -46617399 - B2_Mm2 SINE B2 -13 182 127 6 1175 183 42 0 0 chr9 77458773 77458797 -46617375 + (CATG)n Simple_repeat Simple_repeat 3 26 0 6 1175 987 103 101 18 chr9 77458797 77458925 -46617247 - B2_Mm2 SINE B2 -69 126 1 6 1175 22 80 0 0 chr9 77459261 77459311 -46616861 + AT_rich Low_complexity Low_complexity 1 50 0 6 1175 23 33 0 0 chr9 77459604 77459634 -46616538 + AT_rich Low_complexity Low_complexity 1 30 0 6 1175 354 256 50 14 chr9 77461087 77461226 -46614946 - MER53 DNA hAT -49 144 1 6 1175 874 172 136 0 chr9 77461335 77461504 -46614668 - B3 SINE B2 -21 195 4 6 1175 1535 266 104 17 chr9 77461648 77462388 -46613784 + L1MA4A LINE L1 5065 5929 -374 6 1175 925 255 14 36 chr9 77462444 77462664 -46613508 - B3 SINE B2 0 216 2 6 1175 1844 162 19 98 chr9 77462770 77462995 -46613177 + ORR1C2 LTR MaLR 1 194 -190 6 1175 288 77 0 0 chr9 77462995 77463034 -46613138 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1175 1844 162 19 98 chr9 77463034 77463225 -46612947 + ORR1C2 LTR MaLR 195 384 0 6 1176 259 263 226 9 chr9 77465225 77465340 -46610832 + B1F SINE Alu 3 142 -7 6 1176 312 27 0 0 chr9 77465744 77465781 -46610391 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1176 200 289 50 30 chr9 77466004 77466104 -46610068 - MIR SINE MIR -57 205 104 6 1176 5343 51 3 3 chr9 77466597 77467250 -46608922 - L1_Mus2 LINE L1 -1 6565 5913 6 1176 2062 158 44 6 chr9 77467361 77467724 -46608448 - ORR1C1 LTR MaLR -1 377 1 6 1176 274 258 0 0 chr9 77467767 77467833 -46608339 - L1MA4 LINE L1 -383 5917 5852 6 1176 319 164 297 0 chr9 77468005 77468123 -46608049 - B3 SINE B2 0 216 64 6 1176 508 92 13 0 chr9 77468628 77468704 -46607468 - B3 SINE B2 -139 77 1 6 1176 696 266 152 25 chr9 77468945 77469227 -46606945 + MLT1A0 LTR MaLR 48 365 0 6 1176 287 333 0 0 chr9 77469754 77469847 -46606325 - Tigger5 DNA MER2_type -16 2390 2298 6 1176 232 312 70 18 chr9 77469846 77469960 -46606212 - Tigger5 DNA MER2_type -2160 246 127 6 1176 636 81 0 0 chr9 77470014 77470101 -46606071 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1176 635 270 82 16 chr9 77470145 77470390 -46605782 + Lx9 LINE L1 7257 7517 -127 6 1176 279 0 0 0 chr9 77470391 77470422 -46605750 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1176 270 0 0 0 chr9 77470421 77470451 -46605721 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1176 379 0 39 0 chr9 77470451 77470502 -46605670 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1176 387 0 0 0 chr9 77471847 77471890 -46604282 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1176 733 228 5 54 chr9 77473337 77473541 -46602631 + B3A SINE B2 5 198 0 6 1176 21 0 0 0 chr9 77473549 77473570 -46602602 + AT_rich Low_complexity Low_complexity 1 21 0 6 1176 914 136 7 0 chr9 77473856 77474011 -46602161 + (TTCC)n Simple_repeat Simple_repeat 1 156 0 6 1176 3141 87 21 23 chr9 77474046 77474530 -46601642 - L1_Mus4 LINE L1 -1 6635 6153 6 1176 196 293 107 0 chr9 77474573 77474648 -46601524 + L2b LINE L2 3094 3176 -199 6 1176 2024 109 39 63 chr9 77475330 77475664 -46600508 + ORR1A3 LTR MaLR 1 326 0 6 1176 398 223 0 41 chr9 77475997 77476095 -46600077 - PB1D10 SINE Alu -2 115 22 6 1176 537 16 0 0 chr9 77476275 77476337 -46599835 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1176 589 298 0 37 chr9 77476344 77476508 -46599664 - RSINE1 SINE B4 -4 161 4 6 1176 1212 282 64 19 chr9 77477426 77477913 -46598259 - L1M2 LINE L1 -2844 3299 2791 6 1176 846 171 0 0 chr9 77477930 77478106 -46598066 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 1176 380 285 9 10 chr9 77478196 77478329 -46597843 - L1M2 LINE L1 -3451 2692 2567 6 1176 467 246 8 26 chr9 77479707 77479824 -46596348 - ORR1E LTR MaLR -242 117 3 6 1176 710 23 11 0 chr9 77479858 77479946 -46596226 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 6 1176 371 183 22 22 chr9 77480009 77480188 -46595984 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 6 1176 220 220 16 48 chr9 77480188 77480250 -46595922 + CT-rich Low_complexity Low_complexity 4 63 0 6 1176 266 305 104 10 chr9 77480257 77480353 -46595819 - PB1 SINE Alu -20 107 3 6 1176 232 310 8 96 chr9 77480403 77480528 -46595644 + MER5A1 DNA MER1_type 1 114 -52 6 1176 203 192 13 40 chr9 77480695 77480771 -46595401 + T-rich Low_complexity Low_complexity 4 77 0 7 1176 758 148 22 7 chr9 77480916 77481052 -46595120 + B1_Mus1 SINE Alu 10 147 -1 7 1176 342 115 0 0 chr9 77481267 77481319 -46594853 + (TCC)n Simple_repeat Simple_repeat 3 54 0 7 1176 302 311 56 0 chr9 77482358 77482448 -46593724 + PB1 SINE Alu 30 124 -3 7 1176 335 278 0 12 chr9 77482527 77482628 -46593544 + B1F SINE Alu 47 148 -1 7 1176 245 200 0 30 chr9 77482633 77482700 -46593472 + GA-rich Low_complexity Low_complexity 4 68 0 7 1176 2772 88 5 5 chr9 77482895 77483285 -46592887 - L1_Mus4 LINE L1 -3 6633 6244 7 1176 1295 87 27 0 chr9 77483442 77483625 -46592547 + B2_Mm1t SINE B2 1 188 -5 7 1176 488 228 46 16 chr9 77486374 77486509 -46589663 + PB1D9 SINE Alu 2 150 0 7 1176 227 348 28 14 chr9 77488333 77488476 -46587696 - RMER12 LTR ERVK -455 867 723 7 1176 2362 315 52 66 chr9 77488476 77488511 -46587661 - Lx8 LINE L1 -367 7106 7080 7 1176 2478 112 43 110 chr9 77488511 77489002 -46587170 - RMER6B LTR ERVK 0 461 4 7 1176 2362 315 52 66 chr9 77489002 77490398 -46585774 - Lx8 LINE L1 -394 7079 5694 7 1176 5099 227 62 99 chr9 77490386 77490547 -46585625 - Lx8 LINE L1 -473 5374 5227 7 1176 266 0 0 29 chr9 77490547 77490582 -46585590 + (TTATA)n Simple_repeat Simple_repeat 5 38 0 7 1176 5099 227 62 99 chr9 77490582 77491569 -46584603 - Lx8 LINE L1 -621 5226 4328 7 1176 297 0 0 0 chr9 77491569 77491602 -46584570 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1176 5099 227 62 99 chr9 77491602 77492368 -46583804 - Lx8 LINE L1 -1520 4327 3532 7 1176 1488 45 17 0 chr9 77492369 77492546 -46583626 + B2_Mm2 SINE B2 1 180 -15 7 1176 495 0 0 0 chr9 77492548 77492603 -46583569 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 7 1176 2270 239 75 19 chr9 77492727 77493357 -46582815 - Lx8 LINE L1 -385 7088 6424 7 1176 405 39 0 0 chr9 77493624 77493675 -46582497 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1176 295 189 19 0 chr9 77493704 77493757 -46582415 - LSU-rRNA_Hsa rRNA rRNA -2981 2054 2001 7 1176 432 288 29 35 chr9 77493847 77494020 -46582152 - L1M4 LINE L1 -3195 2951 2780 7 1176 520 307 88 29 chr9 77494135 77494565 -46581607 - L1M4 LINE L1 -3551 2595 2120 7 1176 580 302 23 75 chr9 77494627 77494984 -46581188 + MER33 DNA MER1_type 1 324 0 7 1176 678 194 0 149 chr9 77494988 77495182 -46580990 + URR1B DNA MER1_type 2 166 -59 7 1176 717 250 45 100 chr9 77495207 77495680 -46580492 - RLTR11B LTR ERVK -56 471 7 7 1176 413 81 0 0 chr9 77495689 77495751 -46580421 + URR1B DNA MER1_type 164 225 0 7 1176 320 359 32 13 chr9 77496171 77496329 -46579843 - MamRep38 DNA hAT -133 162 2 7 1176 1463 196 112 0 chr9 77496389 77496711 -46579461 - MTC LTR MaLR -63 358 1 7 1176 311 96 0 19 chr9 77499079 77499132 -46577040 + (TAG)n Simple_repeat Simple_repeat 2 53 0 7 1176 22 35 0 0 chr9 77499190 77499219 -46576953 + AT_rich Low_complexity Low_complexity 1 29 0 7 1176 288 111 0 0 chr9 77499446 77499500 -46576672 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1176 504 48 0 0 chr9 77499500 77499562 -46576610 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1176 552 329 70 8 chr9 77499562 77499993 -46576179 - L1MA5A LINE L1 -251 5938 5459 7 1176 400 267 119 40 chr9 77500001 77500227 -46575945 - L1_Mur3 LINE L1 -464 5416 5147 1 1176 327 294 43 119 chr9 77500235 77500420 -46575752 + B4A SINE B4 1 171 -121 2 1176 529 151 16 30 chr9 77500521 77501093 -46575079 + (CA)n Simple_repeat Simple_repeat 1 563 0 3 1176 662 221 86 3 chr9 77501487 77501684 -46574488 + B3A SINE B2 6 215 -1 4 1176 246 193 33 22 chr9 77501687 77501777 -46574395 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1176 250 301 0 0 chr9 77501828 77501901 -46574271 - ID4 SINE ID -9 74 2 6 1176 207 0 0 0 chr9 77502076 77502099 -46574073 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1176 186 71 0 0 chr9 77502139 77502167 -46574005 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1176 21 71 0 0 chr9 77502403 77502445 -46573727 + AT_rich Low_complexity Low_complexity 1 42 0 9 1176 324 70 0 0 chr9 77504440 77504483 -46571689 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1176 475 175 140 37 chr9 77504545 77504652 -46571520 - PB1D9 SINE Alu -1 119 2 1 1176 333 230 248 10 chr9 77504658 77504759 -46571413 - PB1 SINE Alu -2 125 1 1 1176 716 86 9 0 chr9 77505096 77505201 -46570971 + (TTTTC)n Simple_repeat Simple_repeat 2 107 0 1 1176 701 191 30 8 chr9 77505203 77505335 -46570837 - B1_Mur2 SINE Alu -13 136 2 1 1176 753 268 91 46 chr9 77505610 77505939 -46570233 + MER2 DNA MER2_type 1 344 -1 1 1176 797 167 51 0 chr9 77511401 77511539 -46564633 + B1_Mus1 SINE Alu 1 145 -3 1 1176 204 121 0 29 chr9 77511539 77511573 -46564599 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1176 268 367 28 0 chr9 77511599 77511708 -46564464 + L2a LINE L2 3314 3425 -1 1 1176 333 0 0 0 chr9 77512156 77512193 -46563979 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1176 336 118 0 0 chr9 77512195 77512246 -46563926 + ORR1B2 LTR MaLR 35 85 -282 2 1176 2004 144 141 19 chr9 77513167 77513585 -46562587 + RMER19B LTR ERVK 133 601 -301 2 1176 2875 144 60 4 chr9 77513582 77513910 -46562262 + RMER2 LTR ERV1 36 368 -199 2 1176 231 36 0 0 chr9 77513910 77513938 -46562234 + (CG)n Simple_repeat Simple_repeat 2 29 0 2 1176 261 0 0 0 chr9 77513938 77513966 -46562206 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1176 2875 144 60 4 chr9 77513966 77514139 -46562033 + RMER2 LTR ERV1 369 565 -2 2 1176 1558 166 13 46 chr9 77514139 77514433 -46561739 + RMER19B LTR ERVK 615 898 -4 2 1176 1186 118 4 70 chr9 77514596 77514824 -46561348 + Lx LINE L1 6437 6649 -5 2 1176 1066 246 65 46 chr9 77514916 77514961 -46561211 - MTD LTR MaLR -16 403 364 2 1176 1878 133 128 23 chr9 77514961 77515314 -46560858 + ORR1B1 LTR MaLR 2 391 -3 2 1176 1066 253 67 53 chr9 77515314 77515630 -46560542 - MTD LTR MaLR -56 363 9 2 1176 195 42 0 0 chr9 77515653 77515677 -46560495 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1176 444 86 0 0 chr9 77515677 77515747 -46560425 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1176 358 198 0 0 chr9 77515844 77515930 -46560242 + A-rich Low_complexity Low_complexity 5 90 0 3 1176 210 37 0 0 chr9 77516033 77516060 -46560112 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1176 404 196 0 124 chr9 77516554 77516659 -46559513 + B1F SINE Alu 21 144 -5 3 1176 23 0 0 0 chr9 77516688 77516711 -46559461 + AT_rich Low_complexity Low_complexity 1 23 0 3 1176 268 148 0 32 chr9 77516917 77516980 -46559192 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1176 1201 269 63 23 chr9 77518886 77519236 -46556936 - ORR1D2 LTR MaLR 0 370 7 3 1176 2366 139 35 0 chr9 77519264 77519631 -46556541 - ORR1C2 LTR MaLR -4 380 1 3 1176 719 255 51 5 chr9 77519667 77519864 -46556308 + B3 SINE B2 1 206 -10 3 1176 462 264 36 72 chr9 77519912 77520079 -46556093 - ORR1E LTR MaLR -7 372 212 3 1176 677 127 0 17 chr9 77520086 77520206 -46555966 + ORR1B1 LTR MaLR 41 158 -236 3 1176 401 282 64 8 chr9 77520204 77520329 -46555843 - B3 SINE B2 -15 201 70 4 1176 976 173 19 19 chr9 77520339 77520545 -46555627 + ORR1A4 LTR MaLR 73 278 -51 4 1176 319 122 0 0 chr9 77520688 77520737 -46555435 + ORR1A4 LTR MaLR 346 394 0 4 1176 496 280 96 17 chr9 77520737 77520910 -46555262 - ORR1E LTR MaLR -169 190 4 3 1176 234 382 23 15 chr9 77520990 77521123 -46555049 + MTE-int LTR MaLR 777 910 -670 4 1176 21 57 0 0 chr9 77521231 77521266 -46554906 + AT_rich Low_complexity Low_complexity 1 35 0 4 1176 289 301 79 67 chr9 77521510 77521763 -46554409 + MTE-int LTR MaLR 1198 1453 -127 4 1176 2096 152 161 42 chr9 77522146 77522648 -46553524 - RMER4B LTR ERVK 0 585 24 4 1176 38555 16 2 7 chr9 77522648 77527855 -46548317 + L1Md_A LINE L1 413 5586 -297 4 1176 8896 19 0 0 chr9 77527855 77528851 -46547321 + L1Md_A LINE L1 5587 6582 0 4 1176 38555 14 0 0 chr9 77528851 77528864 -46547308 + L1Md_A LINE L1 5587 5599 -284 4 1176 482 282 17 0 chr9 77529038 77529155 -46547017 + RSINE1 SINE B4 11 129 -36 4 1176 360 0 0 0 chr9 77529161 77529201 -46546971 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1176 22 56 0 0 chr9 77529210 77529246 -46546926 + AT_rich Low_complexity Low_complexity 1 36 0 4 1176 499 344 30 35 chr9 77529444 77529829 -46546343 + L1_Rod LINE L1 2340 2728 -3415 5 1176 483 87 0 0 chr9 77530416 77530485 -46545687 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1176 591 252 86 71 chr9 77530498 77530767 -46545405 - B4 SINE B4 -18 274 2 5 1176 381 287 53 73 chr9 77530769 77531003 -46545169 + L1MA4 LINE L1 5790 6020 -136 5 1176 392 294 66 56 chr9 77531404 77531602 -46544570 - MTEa LTR MaLR -142 237 38 5 1176 1224 228 67 46 chr9 77531627 77531999 -46544173 - MTD LTR MaLR -39 380 1 5 1176 249 182 69 20 chr9 77532735 77532836 -46543336 + MER20B DNA MER1_type 609 714 -69 5 1176 582 276 97 117 chr9 77534129 77534540 -46541632 - MLT1C LTR MaLR -34 433 28 5 1176 934 257 5 0 chr9 77534748 77534962 -46541210 - B3 SINE B2 0 216 2 5 1176 333 0 0 0 chr9 77536034 77536071 -46540101 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1176 206 79 53 0 chr9 77536156 77536194 -46539978 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 6 1176 1094 82 7 7 chr9 77536194 77536342 -46539830 - B1_Mus1 SINE Alu 0 148 1 6 1176 1285 147 66 5 chr9 77537678 77537890 -46538282 - URR1B DNA MER1_type 0 225 1 6 1176 477 323 20 29 chr9 77538340 77538544 -46537628 + MTE-int LTR MaLR 2 203 -1377 6 1176 665 322 27 109 chr9 77539338 77539749 -46536423 + MTE-int LTR MaLR 986 1362 -218 6 1176 37 52 0 0 chr9 77539749 77539807 -46536365 + AT_rich Low_complexity Low_complexity 1 58 0 6 1176 357 317 87 27 chr9 77539807 77539992 -46536180 + MTE-int LTR MaLR 1349 1544 -36 6 1176 556 306 98 13 chr9 77541504 77541544 -46534628 - Lx8 LINE L1 -721 6752 6702 6 1176 207 0 0 0 chr9 77541544 77541567 -46534605 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1176 860 307 217 16 chr9 77541567 77541808 -46534364 - Lx8 LINE L1 -772 6701 6422 6 1176 459 0 0 0 chr9 77541808 77541859 -46534313 + (TAA)n Simple_repeat Simple_repeat 1 51 0 6 1176 860 311 70 27 chr9 77541859 77542179 -46533993 - Lx8 LINE L1 -1052 6421 6086 6 1176 636 111 0 0 chr9 77542368 77542467 -46533705 + (GA)n Simple_repeat Simple_repeat 1 99 0 6 1176 505 181 15 0 chr9 77543080 77543213 -46532959 + (TG)n Simple_repeat Simple_repeat 2 136 0 6 1176 1196 61 0 20 chr9 77543265 77543415 -46532757 + B1_Mus1 SINE Alu 1 147 -1 7 1176 23 0 0 0 chr9 77543415 77543438 -46532734 + AT_rich Low_complexity Low_complexity 1 23 0 7 1176 4950 4 0 0 chr9 77544191 77544735 -46531437 - L1Md_A LINE L1 -605 5278 4735 7 1176 2895 3 0 0 chr9 77544734 77545048 -46531124 + L1Md_A LINE L1 5273 5586 -297 7 1176 9224 2 0 0 chr9 77545048 77546044 -46530128 + L1Md_A LINE L1 5587 6582 0 7 1176 301 189 0 127 chr9 77546194 77546273 -46529899 - ID2 SINE ID -11 72 4 7 1176 231 36 0 0 chr9 77546570 77546598 -46529574 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1176 3029 226 90 51 chr9 77546981 77547895 -46528277 - RMER1C Other Other -1 1341 29 7 1176 1038 116 0 0 chr9 77548483 77548629 -46527543 + B1_Mus1 SINE Alu 2 147 -1 7 1176 633 288 136 36 chr9 77548926 77549060 -46527112 - L1MC4 LINE L1 0 8042 7900 7 1176 339 113 0 0 chr9 77549060 77549113 -46527059 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1176 633 288 136 36 chr9 77549113 77549389 -46526783 - L1MC4 LINE L1 -143 7899 7591 7 1176 763 223 216 12 chr9 77549856 77550195 -46525977 - MTD LTR MaLR 0 419 13 7 1176 1010 346 94 62 chr9 77550250 77550552 -46525620 + MER21B LTR ERV1 1 283 -580 8 1176 733 265 104 22 chr9 77550552 77550822 -46525350 + B4A SINE B4 1 292 0 8 1176 1010 346 94 62 chr9 77550822 77551212 -46524960 + MER21B LTR ERV1 284 715 -148 8 1176 383 212 36 86 chr9 77552382 77552509 -46523663 + B1F SINE Alu 18 141 -8 8 1176 392 238 25 0 chr9 77552509 77552589 -46523583 + ID2 SINE ID 2 83 0 8 1176 383 212 36 86 chr9 77552589 77552600 -46523572 + B1F SINE Alu 142 149 0 8 1176 484 283 110 54 chr9 77552895 77553333 -46522839 - LTR48B LTR ERV1 -129 515 1 8 1176 370 271 94 38 chr9 77553501 77553740 -46522432 + LTR48 LTR ERV1 1 314 -473 8 1176 234 319 29 7 chr9 77554820 77554956 -46521216 - L1MB7 LINE L1 -221 5963 5825 8 1176 21 57 0 0 chr9 77555192 77555227 -46520945 + AT_rich Low_complexity Low_complexity 1 35 0 8 1176 1125 44 0 7 chr9 77556146 77556283 -46519889 + B1_Mus1 SINE Alu 1 136 -12 8 1176 247 0 25 50 chr9 77556283 77556323 -46519849 + (CAAAA)n Simple_repeat Simple_repeat 4 42 0 8 1176 61 45 0 0 chr9 77557433 77557522 -46518650 + AT_rich Low_complexity Low_complexity 1 89 0 9 1176 332 0 47 0 chr9 77557671 77557714 -46518458 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 9 1176 455 213 197 7 chr9 77558283 77558420 -46517752 + RSINE1 SINE B4 3 165 0 9 1176 1210 91 50 22 chr9 77558635 77558815 -46517357 + B2_Mm2 SINE B2 1 185 -10 9 1176 1714 16 5 0 chr9 77560067 77560259 -46515913 + B2_Mm1t SINE B2 1 193 0 9 1176 814 235 62 16 chr9 77560650 77560910 -46515262 - MTC LTR MaLR -1 420 148 9 1176 294 274 128 28 chr9 77562153 77562333 -46513839 + L1MA5A LINE L1 5912 6109 -188 9 1176 570 283 37 54 chr9 77562412 77562707 -46513465 + B4A SINE B4 3 292 0 9 1176 201 147 0 0 chr9 77562709 77562743 -46513429 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1176 257 252 63 72 chr9 77563098 77563209 -46512963 - PB1D10 SINE Alu -6 111 2 9 1176 255 319 0 0 chr9 77563510 77563579 -46512593 + ID4_ SINE ID 4 72 -11 1 1176 1263 165 57 18 chr9 77564401 77564684 -46511488 + Lx9 LINE L1 7350 7643 -1 1 1176 320 256 9 16 chr9 77564851 77564933 -46511239 + PB1D10 SINE Alu 34 113 -7 1 1176 921 301 108 19 chr9 77565926 77566487 -46509685 - MLT-int LTR MaLR -11 1724 904 1 1176 338 290 87 24 chr9 77566942 77567069 -46509103 - MER58B DNA MER1_type -32 309 175 1 1176 244 298 0 0 chr9 77567560 77567644 -46508528 + L1MEf LINE L1 852 935 -5265 1 1176 680 314 76 25 chr9 77567674 77567991 -46508181 + MLT1A0 LTR MaLR 33 365 0 1 1176 651 297 87 17 chr9 77568108 77568415 -46507757 + MTEa LTR MaLR 10 377 -2 1 1176 595 137 0 0 chr9 77568604 77568699 -46507473 - B1_Mus2 SINE Alu -11 136 42 1 1176 309 178 43 32 chr9 77568703 77568796 -46507376 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 1 1176 473 226 6 0 chr9 77568796 77568973 -46507199 + CT-rich Low_complexity Low_complexity 2 179 0 1 1176 278 47 21 0 chr9 77569011 77569067 -46507105 - B1_Mus1 SINE Alu -90 59 1 1 1176 1510 196 14 43 chr9 77569068 77569122 -46507050 - RCHARR1 DNA MER1_type -124 850 811 1 1176 960 89 190 0 chr9 77569122 77569280 -46506892 - B2_Mm1t SINE B2 -5 188 1 1 1176 1510 196 14 43 chr9 77569280 77569593 -46506579 - RCHARR1 DNA MER1_type -164 810 494 1 1176 460 144 56 0 chr9 77569633 77569723 -46506449 - Lx9 LINE L1 -9 7635 7541 1 1176 501 192 24 0 chr9 77569723 77569848 -46506324 + GA-rich Low_complexity Low_complexity 4 131 0 1 1176 1071 0 0 0 chr9 77569848 77569967 -46506205 + (GGAAA)n Simple_repeat Simple_repeat 2 120 0 1 1176 1636 245 38 68 chr9 77569986 77570490 -46505682 - RCHARR1 DNA MER1_type -483 491 3 1 1176 1010 256 24 38 chr9 77570805 77571093 -46505079 - MTEa LTR MaLR -3 376 93 1 1176 183 100 0 0 chr9 77571112 77571142 -46505030 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1176 645 77 308 0 chr9 77573520 77573624 -46502548 - B1_Mus1 SINE Alu -11 137 2 1 1176 364 267 87 20 chr9 77573668 77573863 -46502309 + MER33 DNA MER1_type 18 225 -99 1 1176 1220 122 126 10 chr9 77574271 77574469 -46501703 + URR1B DNA MER1_type 5 225 0 1 1176 578 251 150 24 chr9 77574924 77575091 -46501081 + B4A SINE B4 1 188 -104 1 1176 403 324 0 21 chr9 77576354 77576499 -46499673 - ID_B1 SINE B4 -2 222 81 1 1176 369 0 0 0 chr9 77576499 77576540 -46499632 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1176 406 256 145 0 chr9 77576581 77576698 -46499474 - Lx9 LINE L1 -178 7466 7333 1 1176 218 189 0 0 chr9 77576721 77576758 -46499414 + T-rich Low_complexity Low_complexity 5 41 0 1 1176 3295 46 2 2 chr9 77576772 77577168 -46499004 + MTA_Mm LTR MaLR 1 396 0 1 1176 392 226 25 25 chr9 77577485 77577603 -46498569 - Lx9 LINE L1 -314 7330 7213 1 1176 2627 193 36 6 chr9 77577614 77578109 -46498063 + RLTR18B LTR ERVK 3 512 0 1 1176 1935 151 31 14 chr9 77578109 77578458 -46497714 + RLTR14 LTR ERV1 28 382 0 1 1176 2106 244 39 82 chr9 77578459 77579070 -46497102 - Lx9 LINE L1 -463 7181 6597 1 1176 632 248 65 18 chr9 77579091 77579259 -46496913 - MTD LTR MaLR -243 176 1 1 1176 364 275 145 37 chr9 77580416 77580658 -46495514 - RodERV21-int LTR ERV1 -4266 725 458 1 1176 297 0 0 0 chr9 77580974 77581007 -46495165 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1176 2704 152 11 28 chr9 77581445 77581912 -46494260 + RMER6B LTR ERVK 1 459 -2 1 1176 306 0 0 0 chr9 77581994 77582028 -46494144 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1176 848 148 20 97 chr9 77583693 77583888 -46492284 - RMER10B LTR ERVL -24 374 195 1 1176 1247 147 51 8 chr9 77583869 77584123 -46492049 - RMER10B LTR ERVL -133 265 1 1 1176 1893 152 87 14 chr9 77584127 77584494 -46491678 - ORR1B1 LTR MaLR 0 394 1 1 1176 788 186 0 0 chr9 77584683 77584812 -46491360 + B1_Mus2 SINE Alu 1 129 -18 1 1176 40 21 0 0 chr9 77584817 77584864 -46491308 + AT_rich Low_complexity Low_complexity 1 47 0 1 1176 689 264 95 21 chr9 77584877 77585067 -46491105 + B3 SINE B2 13 216 0 1 1176 825 304 115 32 chr9 77585348 77585783 -46490389 - MT2A LTR ERVL -7 526 56 1 1176 316 312 18 35 chr9 77585697 77585810 -46490362 - MTE2b LTR MaLR -236 143 33 1 1176 731 208 80 24 chr9 77586540 77586752 -46489420 - L1_Rod LINE L1 -2980 2867 2644 1 1176 693 237 14 24 chr9 77587728 77587940 -46488232 - RCHARR1 DNA MER1_type 0 974 765 1 1176 230 73 24 0 chr9 77587959 77588000 -46488172 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 1176 761 191 34 73 chr9 77588312 77588516 -46487656 - RCHARR1 DNA MER1_type -282 692 497 1 1176 180 0 0 0 chr9 77588529 77588549 -46487623 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1176 492 18 0 0 chr9 77588550 77588607 -46487565 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1176 293 212 138 23 chr9 77588609 77588696 -46487476 - MTD LTR MaLR -322 97 1 1 1176 312 73 0 0 chr9 77588769 77588824 -46487348 + L1Md_F2 LINE L1 6528 6582 0 1 1176 351 272 35 9 chr9 77590483 77590598 -46485574 - PB1D7 SINE Alu -1 119 2 1 1176 500 81 0 13 chr9 77590870 77590945 -46485227 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 1 1176 204 67 0 0 chr9 77592033 77592063 -46484109 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 1 1176 215 226 0 0 chr9 77592152 77592205 -46483967 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 1 1176 770 188 0 0 chr9 77593820 77593964 -46482208 + B1_Mur4 SINE Alu 7 150 0 1 1176 264 91 0 0 chr9 77593964 77594008 -46482164 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1176 230 222 125 0 chr9 77594193 77594265 -46481907 + MIRb SINE MIR 20 100 -168 1 1177 222 37 0 0 chr9 77594913 77594940 -46481232 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1177 3407 35 0 5 chr9 77595261 77595659 -46480513 - MTA_Mm LTR MaLR 0 396 1 1 1177 277 296 50 20 chr9 77595976 77596076 -46480096 - RMER4B LTR ERVK -140 445 343 1 1177 473 209 92 79 chr9 77596146 77596332 -46479840 - RMER4B LTR ERVK -338 247 55 1 1177 1249 104 35 0 chr9 77596332 77596505 -46479667 + B2_Mm1t SINE B2 1 179 -14 1 1177 473 209 92 79 chr9 77596505 77596546 -46479626 - RMER4B LTR ERVK -531 54 17 1 1177 25 0 0 0 chr9 77596546 77596571 -46479601 + AT_rich Low_complexity Low_complexity 1 25 0 1 1177 418 268 17 35 chr9 77597205 77597321 -46478851 + ID_B1 SINE B4 105 218 -6 1 1177 1764 144 118 25 chr9 77597735 77598098 -46478074 + RMER10B LTR ERVL 2 398 0 1 1177 499 216 205 38 chr9 77599379 77599500 -46476672 - Charlie5 DNA MER1_type -29 2595 2469 1 1177 414 0 0 0 chr9 77599500 77599546 -46476626 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1177 659 130 36 179 chr9 77599547 77599715 -46476457 - B1_Mur4 SINE Alu -6 144 1 1 1177 499 216 205 38 chr9 77599715 77599884 -46476288 - Charlie5 DNA MER1_type -156 2468 2254 1 1177 286 339 0 80 chr9 77600054 77600081 -46476091 - Charlie5 DNA MER1_type -2497 127 106 1 1177 895 75 272 0 chr9 77600081 77600228 -46475944 - B2_Mm2 SINE B2 -8 187 1 1 1177 286 339 0 80 chr9 77600228 77600338 -46475834 - Charlie5 DNA MER1_type -2519 105 1 1 1177 312 48 0 0 chr9 77600532 77600574 -46475598 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1177 482 274 0 0 chr9 77601063 77601176 -46474996 + PB1D7 SINE Alu 4 116 -4 1 1177 1184 56 0 0 chr9 77601691 77601833 -46474339 + B1_Mus1 SINE Alu 1 142 -6 1 1177 231 88 0 0 chr9 77601834 77601868 -46474304 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1177 703 143 120 0 chr9 77601877 77602010 -46474162 + B1_Mur3 SINE Alu 1 149 0 1 1177 237 132 0 0 chr9 77602097 77602135 -46474037 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1177 261 0 0 0 chr9 77602134 77602163 -46474009 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1177 296 250 0 21 chr9 77602215 77602309 -46473863 + C-rich Low_complexity Low_complexity 5 96 0 1 1177 22 35 0 0 chr9 77602553 77602582 -46473590 + GC_rich Low_complexity Low_complexity 1 29 0 1 1177 24 32 0 0 chr9 77602793 77602824 -46473348 + GC_rich Low_complexity Low_complexity 1 31 0 1 1177 956 147 0 14 chr9 77604393 77604538 -46471634 - B1_Mur4 SINE Alu -6 144 2 1 1177 1561 32 0 0 chr9 77604752 77604939 -46471233 + L1Md_A LINE L1 6394 6580 -2 1 1177 1009 77 19 0 chr9 77605460 77605616 -46470556 + URR1A DNA MER1_type 59 217 -9 1 1177 662 141 156 0 chr9 77606110 77606238 -46469934 + B1F1 SINE Alu 1 148 -1 1 1177 296 288 0 0 chr9 77606255 77606321 -46469851 + ID4_ SINE ID 4 69 -14 1 1177 219 211 0 55 chr9 77607011 77607066 -46469106 - ID4_ SINE ID -30 53 2 1 1177 389 259 180 27 chr9 77607240 77607423 -46468749 + B3 SINE B2 6 216 0 1 1177 851 263 119 51 chr9 77608210 77608743 -46467429 - L1MA8 LINE L1 -195 6134 5577 1 1177 263 108 14 58 chr9 77609074 77609143 -46467029 + (TTTG)n Simple_repeat Simple_repeat 3 68 0 1 1177 773 143 0 0 chr9 77609153 77609279 -46466893 - B1_Mus1 SINE Alu -6 142 17 1 1177 481 218 133 58 chr9 77609285 77609536 -46466636 - L1MA8 LINE L1 -1443 4876 4609 1 1177 236 232 93 47 chr9 77609702 77609788 -46466384 - L1MA8 LINE L1 -5552 848 759 1 1177 227 54 27 0 chr9 77609830 77609867 -46466305 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1 1177 1065 31 0 16 chr9 77609873 77610002 -46466170 - B1_Mus2 SINE Alu -19 128 2 1 1177 241 250 0 0 chr9 77610394 77610450 -46465722 - ID4_ SINE ID -2 81 26 1 1177 1306 143 70 19 chr9 77610830 77611044 -46465128 - URR1B DNA MER1_type 0 225 1 1 1177 586 331 23 11 chr9 77611319 77611579 -46464593 - RMER15 LTR ERVL -36 539 277 1 1177 274 302 128 30 chr9 77611596 77611729 -46464443 - RMER15 LTR ERVL -426 149 4 1 1177 453 311 93 59 chr9 77612320 77612556 -46463616 + B4A SINE B4 8 251 -41 1 1177 186 71 0 0 chr9 77612708 77612736 -46463436 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1177 23 0 0 0 chr9 77615617 77615640 -46460532 + AT_rich Low_complexity Low_complexity 1 23 0 1 1177 1518 182 126 26 chr9 77616266 77616615 -46459557 - ORR1C2 LTR MaLR 0 384 1 1 1177 1211 68 0 0 chr9 77616655 77616802 -46459370 - B1_Mus1 SINE Alu 0 148 2 1 1177 419 279 200 16 chr9 77619179 77619434 -46456738 + LTR73 LTR ERV1 4 305 -267 1 1177 414 0 0 0 chr9 77619962 77620008 -46456164 + (CTG)n Simple_repeat Simple_repeat 3 48 0 1 1177 320 294 162 24 chr9 77620677 77620844 -46455328 - ORR1E LTR MaLR -169 190 1 1 1177 419 299 80 0 chr9 77621332 77621469 -46454703 + B1F SINE Alu 2 149 0 2 1177 342 98 0 0 chr9 77621749 77621800 -46454372 + (CATA)n Simple_repeat Simple_repeat 1 51 0 2 1177 1096 90 7 0 chr9 77622525 77622670 -46453502 + B1_Mus1 SINE Alu 2 147 -1 2 1177 318 205 142 48 chr9 77623088 77623217 -46452955 + MIR SINE MIR 39 180 -88 2 1177 798 193 7 33 chr9 77623388 77623538 -46452634 - B1_Mus2 SINE Alu -1 146 1 2 1177 23 0 0 0 chr9 77623835 77623858 -46452314 + AT_rich Low_complexity Low_complexity 1 23 0 2 1177 323 211 28 0 chr9 77624316 77624387 -46451785 + RMER30 DNA MER1_type 129 201 -1 2 1177 23 33 0 0 chr9 77625273 77625303 -46450869 + AT_rich Low_complexity Low_complexity 1 30 0 2 1177 260 214 18 0 chr9 77626204 77626260 -46449912 + CT-rich Low_complexity Low_complexity 1 57 0 2 1177 560 79 132 108 chr9 77626278 77626407 -46449765 - B1_Mur3 SINE Alu 0 149 27 2 1177 288 0 0 0 chr9 77627948 77627980 -46448192 + (ACTG)n Simple_repeat Simple_repeat 2 33 0 2 1177 601 203 24 31 chr9 77628053 77628180 -46447992 - B1_Mur2 SINE Alu -1 148 23 2 1177 225 310 150 0 chr9 77630617 77630717 -46445455 + PB1D10 SINE Alu 2 116 -1 2 1177 780 274 171 4 chr9 77631555 77631801 -46444371 - B4 SINE B4 -5 287 1 2 1177 274 290 106 11 chr9 77634361 77634455 -46441717 - RSINE1 SINE B4 -17 148 46 2 1177 342 80 0 0 chr9 77636927 77636977 -46439195 + (GGGTG)n Simple_repeat Simple_repeat 4 53 0 2 1177 323 231 27 2 chr9 77637068 77637147 -46439025 - MTD LTR MaLR 0 419 283 2 1177 23 54 0 0 chr9 77637197 77637234 -46438938 + AT_rich Low_complexity Low_complexity 1 37 0 2 1177 412 227 11 35 chr9 77637332 77637451 -46438721 + PB1D10 SINE Alu 8 116 -1 2 1177 225 0 0 0 chr9 77637898 77637923 -46438249 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 2 1177 210 268 68 26 chr9 77638055 77638169 -46438003 + MIR SINE MIR 72 194 -74 2 1177 319 204 67 11 chr9 77638746 77638835 -46437337 + B4A SINE B4 128 221 -71 2 1177 925 240 14 0 chr9 77638924 77639132 -46437040 + B3 SINE B2 2 212 -4 2 1177 437 274 94 22 chr9 77642350 77642488 -46433684 - B1_Mur1 SINE Alu 0 149 2 2 1177 2596 74 3 6 chr9 77642852 77643190 -46432982 - IAPLTR4 LTR ERVK -8 337 1 2 1177 1297 70 42 21 chr9 77643420 77643609 -46432563 + B2_Mm1a SINE B2 1 193 0 2 1177 2638 257 133 45 chr9 77644255 77645410 -46430762 + Lx8 LINE L1 6189 7473 0 2 1177 891 37 0 0 chr9 77645459 77645567 -46430605 - B1_Mm SINE Alu -5 142 35 2 1177 296 291 70 0 chr9 77646132 77646218 -46429954 - MLT1A LTR MaLR -65 309 218 2 1177 3114 73 20 2 chr9 77646829 77647229 -46428943 - MTB_Mm LTR MaLR 0 407 1 2 1177 435 173 0 0 chr9 77647309 77647390 -46428782 + CT-rich Low_complexity Low_complexity 3 83 0 2 1177 244 275 116 0 chr9 77647392 77647461 -46428711 - PB1D7 SINE Alu -43 77 1 2 1177 244 353 29 0 chr9 77647405 77647473 -46428699 - B4A SINE B4 -149 143 74 2 1177 529 289 137 8 chr9 77647544 77647799 -46428373 - B4A SINE B4 -1 291 4 2 1177 727 266 100 78 chr9 77647830 77648320 -46427852 - RLTR16 LTR ERVK -4 501 1 2 1177 227 105 79 0 chr9 77648652 77648690 -46427482 + B1_Mus2 SINE Alu 95 135 -12 2 1177 570 41 0 0 chr9 77648690 77648763 -46427409 + (CAAAA)n Simple_repeat Simple_repeat 3 75 0 2 1177 189 94 0 0 chr9 77649112 77649144 -46427028 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1177 184 228 105 0 chr9 77649897 77649954 -46426218 - L3 LINE CR1 -2163 2326 2264 2 1177 570 215 0 9 chr9 77650377 77650485 -46425687 - B3 SINE B2 -5 211 105 2 1177 335 274 149 9 chr9 77650659 77650766 -46425406 - RSINE1 SINE B4 -32 133 12 2 1177 301 174 284 32 chr9 77650890 77650985 -46425187 - PB1D9 SINE Alu -1 119 1 2 1177 472 294 47 17 chr9 77651000 77651232 -46424940 - L1M5 LINE L1 -3235 2911 2673 2 1177 474 18 0 0 chr9 77651452 77651507 -46424665 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1177 360 0 0 0 chr9 77651771 77651811 -46424361 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1177 1296 254 152 31 chr9 77652202 77652742 -46423430 + L1MD1 LINE L1 5283 5887 -355 2 1177 337 238 75 19 chr9 77652961 77653068 -46423104 + L1MD1 LINE L1 6106 6218 -24 2 1177 243 323 92 0 chr9 77653104 77653219 -46422953 - MIRc SINE MIR -46 216 97 2 1177 189 304 96 21 chr9 77653271 77653365 -46422807 + MIRc SINE MIR 11 111 -157 2 1177 366 23 0 0 chr9 77653750 77653793 -46422379 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1177 357 24 0 0 chr9 77655401 77655443 -46420729 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1177 3642 70 4 2 chr9 77655444 77655906 -46420266 - L1_Mus1 LINE L1 0 6567 6105 2 1177 240 59 0 0 chr9 77656293 77656327 -46419845 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1177 1525 257 76 44 chr9 77657608 77658177 -46417995 + L1MB2 LINE L1 5583 6169 -2 2 1177 792 204 0 13 chr9 77658396 77658545 -46417627 + B1_Mur3 SINE Alu 1 147 -2 2 1177 542 189 0 16 chr9 77658572 77658686 -46417486 + GA-rich Low_complexity Low_complexity 1 112 0 2 1177 4598 42 0 0 chr9 77658686 77659238 -46416934 + L1Md_F2 LINE L1 6028 6582 0 2 1177 32 0 0 0 chr9 77659303 77659335 -46416837 + AT_rich Low_complexity Low_complexity 1 32 0 2 1177 549 80 0 0 chr9 77659350 77659425 -46416747 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 2 1177 198 0 0 0 chr9 77659819 77659841 -46416331 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1177 696 24 0 0 chr9 77659841 77659922 -46416250 + (GA)n Simple_repeat Simple_repeat 2 83 0 2 1177 265 327 79 17 chr9 77660141 77660315 -46415857 + MLT1A LTR MaLR 258 505 0 2 1177 195 312 129 14 chr9 77661870 77662010 -46414162 + L2c LINE L2 2920 3075 -312 2 1177 838 259 5 39 chr9 77662613 77662818 -46413354 + B3A SINE B2 1 198 0 2 1177 208 143 0 0 chr9 77663447 77663482 -46412690 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1177 438 237 88 6 chr9 77663785 77663925 -46412247 + MTD LTR MaLR 273 420 -1 2 1177 1057 265 51 57 chr9 77664876 77665248 -46410924 + ORR1D2 LTR MaLR 1 370 0 2 1177 1164 26 13 34 chr9 77665278 77665519 -46410653 + (CA)n Simple_repeat Simple_repeat 1 235 0 2 1177 1031 24 8 0 chr9 77665669 77665795 -46410377 + (TG)n Simple_repeat Simple_repeat 2 128 0 2 1177 775 244 36 104 chr9 77665868 77666057 -46410115 - B3 SINE B2 0 216 49 2 1177 2228 161 55 17 chr9 77666057 77666461 -46409711 + MTC LTR MaLR 3 421 0 2 1177 775 189 18 174 chr9 77666461 77666527 -46409645 - B3 SINE B2 -150 48 1 2 1177 225 83 0 0 chr9 77666636 77666672 -46409500 + (CTAA)n Simple_repeat Simple_repeat 1 36 0 2 1177 835 150 34 101 chr9 77667220 77667428 -46408744 - B2_Mm2 SINE B2 0 195 2 2 1177 1212 266 23 37 chr9 77667791 77667958 -46408214 + ORR1C2 LTR MaLR 5 169 -201 2 1177 351 0 0 0 chr9 77667958 77667997 -46408175 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 2 1177 1212 266 23 37 chr9 77667997 77668180 -46407992 + ORR1C2 LTR MaLR 170 350 -20 2 1177 3191 236 88 46 chr9 77668197 77669174 -46406998 + ORR1C2-int LTR MaLR 2 1019 -351 2 1177 832 217 54 6 chr9 77669230 77669397 -46406775 + B3 SINE B2 1 175 -41 2 1177 271 276 77 7 chr9 77669474 77669600 -46406572 + L1MB7 LINE L1 5652 5789 -367 2 1177 436 276 70 0 chr9 77669634 77669790 -46406382 + L1MB7 LINE L1 5773 5939 -245 2 1177 1485 181 20 39 chr9 77669915 77670220 -46405952 + ORR1C2 LTR MaLR 85 383 -1 2 1177 250 274 204 0 chr9 77670494 77670607 -46405565 - MER5A1 DNA MER1_type -3 163 28 2 1177 280 246 14 42 chr9 77671086 77671158 -46405014 - ID4_ SINE ID -13 70 1 2 1177 63 44 0 0 chr9 77672768 77672859 -46403313 + AT_rich Low_complexity Low_complexity 1 91 0 2 1177 553 245 20 84 chr9 77672866 77673164 -46403008 - Lx7 LINE L1 -95 7601 7323 2 1177 292 41 20 39 chr9 77673965 77674016 -46402156 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 2 1177 295 280 27 0 chr9 77674727 77674802 -46401370 - RSINE1 SINE B4 -7 158 82 2 1177 459 35 0 0 chr9 77674937 77674994 -46401178 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1177 321 254 102 71 chr9 77675001 77675128 -46401044 - RSINE1 SINE B4 -32 133 3 2 1177 414 0 0 0 chr9 77675202 77675248 -46400924 + (TAA)n Simple_repeat Simple_repeat 1 46 0 2 1177 377 275 94 90 chr9 77675287 77675575 -46400597 + B4A SINE B4 3 291 -1 2 1177 605 173 0 9 chr9 77675747 77675852 -46400320 + B1_Mur3 SINE Alu 44 147 -2 2 1177 1357 280 82 25 chr9 77675853 77676403 -46399769 + L1MC2 LINE L1 5305 5885 -459 2 1177 383 285 26 31 chr9 77676405 77676586 -46399586 + L1_Rod LINE L1 5426 5638 -245 2 1177 640 306 43 9 chr9 77676630 77676926 -46399246 + L1MA4 LINE L1 5549 5935 -365 2 1177 498 231 55 90 chr9 77677360 77677560 -46398612 - B3 SINE B2 -5 211 19 2 1177 810 264 48 17 chr9 77677561 77677850 -46398322 + L1MC2 LINE L1 6030 6327 -17 2 1177 250 241 15 29 chr9 77677971 77678108 -46398064 + GA-rich Low_complexity Low_complexity 1 135 0 2 1177 343 267 32 48 chr9 77678230 77678356 -46397816 + MLT1D LTR MaLR 79 202 -303 2 1177 935 238 10 5 chr9 77678670 77678877 -46397295 + MTC LTR MaLR 3 210 -211 2 1177 811 166 27 33 chr9 77678877 77679027 -46397145 + B1_Mur1 SINE Alu 1 149 0 2 1177 726 43 0 0 chr9 77679029 77679122 -46397050 + B1_Mm SINE Alu 52 144 -3 2 1177 297 0 0 0 chr9 77679122 77679155 -46397017 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 1177 839 188 86 9 chr9 77679161 77679371 -46396801 + MTC LTR MaLR 194 419 0 2 1177 326 373 0 0 chr9 77679471 77679597 -46396575 + G-rich Low_complexity Low_complexity 5 130 0 2 1177 338 407 0 0 chr9 77679765 77679932 -46396240 + C-rich Low_complexity Low_complexity 4 170 0 2 1177 269 251 87 55 chr9 77679936 77680067 -46396105 + MLT1D LTR MaLR 297 503 -2 2 1177 187 317 50 0 chr9 77680250 77680310 -46395862 - MIR SINE MIR -168 94 32 2 1177 468 0 0 0 chr9 77680351 77680403 -46395769 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1177 3891 128 181 5 chr9 77680404 77681212 -46394960 - ORR1A4-int LTR MaLR -296 1667 718 3 1177 417 139 0 168 chr9 77681171 77681266 -46394906 - MT2B LTR ERVL -314 287 209 3 1177 587 78 33 0 chr9 77681265 77681355 -46394817 + B1_Mm SINE Alu 55 147 0 3 1177 201 74 0 0 chr9 77681355 77681382 -46394790 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3 1177 593 184 123 0 chr9 77681387 77681501 -46394671 - MT2B LTR ERVL -380 221 94 3 1177 1095 167 5 0 chr9 77681414 77681618 -46394554 - ORR1A4-int LTR MaLR -1205 758 554 3 1177 1978 121 6 6 chr9 77681636 77681960 -46394212 - ORR1A4 LTR MaLR -5 324 1 3 1177 216 268 71 35 chr9 77683225 77683310 -46392862 - MIRb SINE MIR -57 211 124 3 1177 227 192 14 0 chr9 77683557 77683630 -46392542 + GA-rich Low_complexity Low_complexity 1 74 0 3 1177 180 0 0 0 chr9 77684840 77684860 -46391312 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1177 585 240 120 40 chr9 77685328 77685528 -46390644 + B3 SINE B2 1 216 0 3 1177 287 49 24 0 chr9 77686800 77686841 -46389331 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1177 1365 252 149 28 chr9 77686939 77687511 -46388661 - L1_Mur3 LINE L1 -107 5773 5133 3 1177 1146 43 0 0 chr9 77687535 77687673 -46388499 - B1_Mus1 SINE Alu -8 140 3 3 1177 3843 243 83 12 chr9 77687726 77688895 -46387277 - L1_Mur3 LINE L1 -1537 4343 3092 3 1177 336 369 100 7 chr9 77689611 77689892 -46386280 + L2 LINE L2 2686 2992 -427 3 1177 246 240 0 0 chr9 77690063 77690113 -46386059 - RMER30 DNA MER1_type -152 50 1 3 1177 1488 32 26 26 chr9 77690455 77690648 -46385524 - B2_Mm1t SINE B2 0 193 1 3 1177 302 331 8 24 chr9 77691122 77691249 -46384923 - MT2A LTR ERVL -112 421 297 3 1177 939 158 7 0 chr9 77692122 77692268 -46383904 - B1_Mus1 SINE Alu -1 147 1 3 1177 538 252 42 7 chr9 77692452 77692596 -46383576 + B1F SINE Alu 1 149 0 3 1177 695 287 77 98 chr9 77692800 77693179 -46382993 + MTEa LTR MaLR 1 371 -8 3 1177 333 0 0 0 chr9 77694143 77694180 -46381992 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1177 992 116 0 0 chr9 77694180 77694327 -46381845 - B2_Mm2 SINE B2 -46 149 3 3 1177 370 268 243 14 chr9 77694395 77694653 -46381519 - MLT1A1 LTR MaLR -80 328 7 3 1177 215 211 0 0 chr9 77695309 77695347 -46380825 + polypyrimidine Low_complexity Low_complexity 2 39 0 3 1177 472 301 149 22 chr9 77695516 77695838 -46380334 + L1MC LINE L1 5341 5703 -2179 3 1177 371 265 248 14 chr9 77695932 77696154 -46380018 + Tigger1 DNA MER2_type 134 407 -2011 3 1177 1739 227 20 10 chr9 77696154 77696555 -46379617 + MTD LTR MaLR 1 405 -14 3 1177 1924 281 100 76 chr9 77696569 77697557 -46378615 + Tigger1 DNA MER2_type 404 1415 -1003 3 1177 455 250 126 24 chr9 77697831 77697958 -46378214 + RSINE1 SINE B4 4 143 -22 3 1177 873 78 70 0 chr9 77698025 77698153 -46378019 + B1_Mus1 SINE Alu 6 142 -6 3 1177 272 91 0 22 chr9 77698155 77698200 -46377972 + (TAA)n Simple_repeat Simple_repeat 2 45 0 3 1177 528 283 42 32 chr9 77698235 77698425 -46377747 + B3A SINE B2 1 192 -6 3 1177 621 152 143 19 chr9 77698462 77698592 -46377580 - RMER12B LTR ERVK 0 1404 1256 3 1177 1050 50 0 0 chr9 77698592 77698733 -46377439 + (CA)n Simple_repeat Simple_repeat 1 141 0 3 1177 621 152 143 19 chr9 77698733 77698763 -46377409 - RMER12B LTR ERVK -149 1255 1225 3 1177 1687 217 51 117 chr9 77698735 77699402 -46376770 - RLTR21 LTR ERVK -485 1087 465 3 1177 21 36 0 0 chr9 77700173 77700201 -46375971 + AT_rich Low_complexity Low_complexity 1 28 0 3 1177 599 129 29 10 chr9 77700247 77700349 -46375823 - B1_Mur1 SINE Alu -1 148 45 3 1177 264 240 92 119 chr9 77700252 77700361 -46375811 - B4 SINE B4 -72 220 115 3 1177 258 32 0 0 chr9 77700364 77700395 -46375777 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 3 1177 560 245 111 11 chr9 77700395 77700585 -46375587 - ID_B1 SINE B4 -14 210 2 3 1177 1241 216 241 26 chr9 77700761 77701152 -46375020 - RLTR21 LTR ERVK -1097 475 1 3 1177 1226 129 119 0 chr9 77701364 77701565 -46374607 - URR1A DNA MER1_type 0 226 2 3 1177 10857 93 33 58 chr9 77702900 77704795 -46371377 - RLTR22_Mur LTR ERVK 0 1848 1 3 1177 270 294 35 0 chr9 77706417 77706502 -46369670 - L1MB2 LINE L1 -169 6002 5915 3 1177 2425 45 34 28 chr9 77706725 77707045 -46369127 - L1_Mus2 LINE L1 0 6566 6245 3 1177 378 0 0 0 chr9 77707408 77707450 -46368722 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1177 484 327 12 18 chr9 77707971 77708139 -46368033 - B4A SINE B4 -124 168 2 3 1177 27 49 0 0 chr9 77708204 77708245 -46367927 + AT_rich Low_complexity Low_complexity 1 41 0 3 1177 334 364 8 0 chr9 77708366 77708487 -46367685 - LTR33 LTR ERVL -73 442 321 3 1177 379 381 25 18 chr9 77708571 77708734 -46367438 - LTR33 LTR ERVL -337 178 15 3 1177 2689 128 10 0 chr9 77708781 77709171 -46367001 + ORR1B1 LTR MaLR 1 394 0 3 1177 240 259 15 62 chr9 77709310 77709453 -46366719 + L1MB7 LINE L1 4594 4727 -1419 3 1177 7370 101 22 15 chr9 77709462 77710993 -46365179 - Lx LINE L1 -18 6636 5091 3 1177 1287 266 46 74 chr9 77710975 77711211 -46364961 + L1MB7 LINE L1 4718 4945 -1201 3 1177 4569 98 45 3 chr9 77711211 77711311 -46364861 - Lx LINE L1 -9 6645 6536 3 1177 216 0 0 0 chr9 77711311 77711335 -46364837 + (CCCA)n Simple_repeat Simple_repeat 1 24 0 3 1177 4569 98 45 3 chr9 77711335 77711886 -46364286 - Lx LINE L1 -119 6535 5968 3 1177 1287 267 84 92 chr9 77711886 77712700 -46363472 + L1MB7 LINE L1 4946 5741 -443 3 1177 1174 62 0 7 chr9 77712700 77712845 -46363327 + B1_Mus2 SINE Alu 2 145 -2 3 1177 948 269 133 115 chr9 77712845 77713237 -46362935 + L1MB7 LINE L1 5742 6152 -32 3 1177 1174 192 77 108 chr9 77713238 77713600 -46362572 + ORR1C2 LTR MaLR 1 351 -33 3 1177 4450 118 6 13 chr9 77714612 77715301 -46360871 - L1_Mm LINE L1 -870 5013 4330 3 1177 3089 50 33 19 chr9 77715301 77715731 -46360441 + RLTR10C LTR ERVK 1 436 0 3 1177 1461 71 14 7 chr9 77715731 77715993 -46360179 + MMERVK10C-int LTR ERVK 1 343 -7238 3 1177 1003 152 4 101 chr9 77715991 77716239 -46359933 + MMERVK10C-int LTR ERVK 729 952 -6629 3 1177 675 224 300 42 chr9 77716329 77716715 -46359457 + MMERVK10C-int LTR ERVK 312 688 -5449 3 1177 361 118 6 70 chr9 77716699 77716828 -46359344 + MMERVK10C-int LTR ERVK 1721 1947 -5634 3 1177 42932 41 2 11 chr9 77716834 77721909 -46354263 + MMERVK10C-int LTR ERVK 2552 7581 0 3 1177 3456 57 28 5 chr9 77721909 77722335 -46353837 + RLTR10C LTR ERVK 1 436 0 3 1177 270 86 0 0 chr9 77722335 77722370 -46353802 - L1_Mm LINE L1 -1549 4334 4300 3 1177 2975 85 4 103 chr9 77722370 77722866 -46353306 + L1_Mus3 LINE L1 6192 6638 0 3 1177 3081 260 18 56 chr9 77722875 77723096 -46353076 + ORR1D2-int LTR MaLR 524 751 -619 3 1177 1022 140 171 0 chr9 77723096 77723289 -46352883 + URR1A DNA MER1_type 1 226 0 3 1177 3081 260 18 56 chr9 77723289 77723947 -46352225 + ORR1D2-int LTR MaLR 752 1370 0 3 1177 1588 219 30 25 chr9 77723947 77724313 -46351859 + ORR1D2 LTR MaLR 1 368 -2 3 1177 468 51 0 0 chr9 77724314 77724373 -46351799 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1177 898 259 103 129 chr9 77724778 77725411 -46350761 + RLTR18 LTR ERVK 1 616 0 3 1178 668 150 6 29 chr9 77725805 77725977 -46350195 + (CCCTAA)n Simple_repeat Simple_repeat 4 171 0 3 1178 5434 176 31 53 chr9 77726214 77727755 -46348417 - L1_Mur3 LINE L1 -3486 2394 892 3 1178 283 293 35 41 chr9 77727988 77728149 -46348023 - LTR48B LTR ERV1 0 787 474 3 1178 587 297 82 42 chr9 77728179 77728625 -46347547 - LTR48B LTR ERV1 -129 515 1 3 1178 1542 261 19 8 chr9 77728851 77729210 -46346962 + Lx6 LINE L1 7062 7424 -36 3 1178 2091 214 25 19 chr9 77729210 77729696 -46346476 - ORR1D2-int LTR MaLR -881 489 1 3 1178 1074 239 96 7 chr9 77729700 77729991 -46346181 - ORR1D2 LTR MaLR -4 366 50 3 1178 592 251 84 55 chr9 77729981 77730157 -46346015 + MTD LTR MaLR 198 384 -35 3 1178 1946 198 100 58 chr9 77730157 77730688 -46345484 - RLTR31_Mur LTR ERVK 0 553 1 3 1178 592 251 84 55 chr9 77730688 77730713 -46345459 + MTD LTR MaLR 385 405 -14 3 1178 339 143 0 0 chr9 77730726 77730782 -46345390 - ORR1D2 LTR MaLR -314 56 1 3 1178 241 227 59 29 chr9 77731501 77731569 -46344603 - ID4_ SINE ID -13 70 1 3 1178 1443 187 19 107 chr9 77731704 77732069 -46344103 - RLTR18B LTR ERVK -166 346 14 3 1178 840 246 20 20 chr9 77732073 77732276 -46343896 - B3 SINE B2 -13 203 1 3 1178 301 274 0 69 chr9 77732625 77732727 -46343445 - PB1D10 SINE Alu 0 117 23 3 1178 716 145 105 15 chr9 77732881 77733014 -46343158 - B1_Mur4 SINE Alu 0 150 6 3 1178 2467 138 20 20 chr9 77733112 77733504 -46342668 + ORR1B1 LTR MaLR 3 394 0 3 1178 189 175 0 0 chr9 77733757 77733797 -46342375 + CT-rich Low_complexity Low_complexity 3 42 0 3 1178 282 164 0 0 chr9 77733863 77733918 -46342254 + CT-rich Low_complexity Low_complexity 4 58 0 3 1178 450 0 0 0 chr9 77733979 77734029 -46342143 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1178 342 327 60 36 chr9 77734117 77734285 -46341887 - B4A SINE B4 -112 180 9 3 1178 566 256 45 1 chr9 77734300 77734505 -46341667 + L1MA5A LINE L1 5662 5888 -409 3 1178 819 175 0 0 chr9 77735479 77735633 -46340539 + CT-rich Low_complexity Low_complexity 3 156 0 3 1178 1124 76 21 0 chr9 77735636 77735781 -46340391 - B1_Mus1 SINE Alu 0 148 1 3 1178 565 295 126 0 chr9 77736016 77736199 -46339973 + B3 SINE B2 1 206 -10 3 1178 24 53 0 0 chr9 77736202 77736240 -46339932 + AT_rich Low_complexity Low_complexity 1 38 0 3 1178 4572 264 99 28 chr9 77736552 77738730 -46337442 - Lx9 LINE L1 -102 7542 5060 3 1178 287 250 69 75 chr9 77738734 77738894 -46337278 + L1ME2 LINE L1 5330 5488 -956 3 1178 1987 107 3 59 chr9 77738900 77739237 -46336935 + ORR1A3 LTR MaLR 1 318 -8 3 1178 1290 265 43 29 chr9 77739237 77739708 -46336464 + L1ME2 LINE L1 5485 5992 -452 3 1178 495 0 0 0 chr9 77739884 77739939 -46336233 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1178 278 333 104 12 chr9 77740415 77740579 -46335593 + LTR16D2 LTR ERVL 96 274 -298 3 1178 585 205 66 0 chr9 77740944 77741066 -46335106 + B3 SINE B2 1 130 -86 3 1178 8025 45 24 6 chr9 77741595 77742571 -46333601 - L1Md_F2 LINE L1 -3 6579 5587 3 1178 8325 77 0 2 chr9 77742574 77743673 -46332499 + L1_Mm LINE L1 2538 3634 -2249 3 1178 940 140 6 12 chr9 77743893 77744066 -46332106 + GA-rich Low_complexity Low_complexity 6 177 0 3 1178 497 16 0 16 chr9 77744071 77744134 -46332038 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 3 1178 772 225 24 42 chr9 77744144 77744311 -46331861 + B3A SINE B2 1 164 -34 3 1178 444 37 0 0 chr9 77744311 77744365 -46331807 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1178 1924 134 18 15 chr9 77744424 77744757 -46331415 - MTB_Mm LTR MaLR -72 335 2 3 1178 253 283 27 45 chr9 77744842 77744953 -46331219 - PB1D7 SINE Alu -7 113 5 3 1178 736 199 0 64 chr9 77745095 77745251 -46330921 + B1_Mur4 SINE Alu 5 150 0 3 1178 185 65 0 31 chr9 77745251 77745283 -46330889 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 3 1178 721 202 212 5 chr9 77746029 77746213 -46329959 + URR1A DNA MER1_type 5 226 0 3 1178 198 0 0 0 chr9 77746360 77746382 -46329790 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1178 822 169 0 7 chr9 77746787 77746924 -46329248 + B1_Mus1 SINE Alu 2 137 -11 4 1178 721 251 25 0 chr9 77747809 77747972 -46328200 + B3 SINE B2 1 167 -49 4 1178 231 88 0 0 chr9 77747972 77748006 -46328166 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1178 441 0 0 0 chr9 77748015 77748064 -46328108 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1178 697 51 20 0 chr9 77748309 77748407 -46327765 + (TAGA)n Simple_repeat Simple_repeat 4 103 0 4 1178 874 281 25 22 chr9 77750543 77750819 -46325353 + B4 SINE B4 2 278 -14 4 1178 291 54 0 0 chr9 77751206 77751243 -46324929 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1178 868 222 138 0 chr9 77752542 77752767 -46323405 - RMER1C Other Other -18 1324 1069 4 1178 454 256 154 8 chr9 77752887 77753017 -46323155 + RSINE1 SINE B4 3 151 -14 4 1178 268 171 78 13 chr9 77753155 77753232 -46322940 - MER33 DNA MER1_type -88 236 155 4 1178 311 241 138 9 chr9 77753275 77753384 -46322788 - Charlie5 DNA MER1_type -233 2391 2269 4 1178 258 200 138 0 chr9 77753385 77753450 -46322722 - MER33 DNA MER1_type -238 86 13 4 1178 190 268 20 45 chr9 77753578 77753656 -46322516 - L2b LINE L2 -8 3418 3306 4 1178 1222 254 130 66 chr9 77754266 77754876 -46321296 + Lx8 LINE L1 5787 6443 -1030 4 1178 2787 177 27 112 chr9 77754876 77755544 -46320628 - RMER19C LTR ERVK 0 611 1 4 1178 1222 254 132 68 chr9 77755544 77755572 -46320600 + Lx8 LINE L1 6444 6467 -1006 4 1178 1888 279 102 30 chr9 77755833 77756497 -46319675 + Lx8 LINE L1 6497 7208 -265 4 1178 415 272 53 2 chr9 77756733 77756864 -46319308 - B1F SINE Alu -7 142 6 4 1178 289 302 40 67 chr9 77756864 77756877 -46319295 - ID_B1 SINE B4 -2 217 78 4 1178 1755 131 127 14 chr9 77757362 77757733 -46318439 + MTC LTR MaLR 1 413 -8 4 1178 237 33 0 0 chr9 77759693 77759723 -46316449 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1178 872 265 0 9 chr9 77760252 77760469 -46315703 + B3 SINE B2 1 215 -1 4 1178 245 220 0 0 chr9 77761013 77761081 -46315091 - L1MB7 LINE L1 -6 6178 6109 4 1178 684 248 108 5 chr9 77761226 77761403 -46314769 + B3 SINE B2 1 193 -23 4 1178 348 83 0 0 chr9 77761403 77761451 -46314721 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1178 684 248 108 5 chr9 77761451 77761468 -46314704 + B3 SINE B2 194 215 -1 4 1178 587 253 0 40 chr9 77761540 77761596 -46314576 - B3 SINE B2 0 216 167 4 1178 366 23 0 0 chr9 77761596 77761639 -46314533 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1178 587 253 0 40 chr9 77761639 77761734 -46314438 - B3 SINE B2 -50 166 72 4 1178 566 259 116 1 chr9 77761864 77762043 -46314129 - B3A SINE B2 -11 205 8 4 1178 297 333 82 51 chr9 77762117 77762373 -46313799 - L2a LINE L2 -134 3292 3029 4 1178 227 103 26 0 chr9 77762938 77762977 -46313195 + (GAA)n Simple_repeat Simple_repeat 3 42 0 4 1178 23 68 0 0 chr9 77763376 77763420 -46312752 + AT_rich Low_complexity Low_complexity 1 44 0 4 1178 198 0 0 0 chr9 77764853 77764875 -46311297 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 4 1178 22 80 0 0 chr9 77765414 77765464 -46310708 + GC_rich Low_complexity Low_complexity 1 50 0 4 1178 188 35 35 0 chr9 77767127 77767156 -46309016 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1178 225 321 59 12 chr9 77767271 77767356 -46308816 - ID4_ SINE ID -62 90 2 4 1178 921 145 22 0 chr9 77767467 77767605 -46308567 + B1_Mur4 SINE Alu 1 141 -9 4 1178 225 0 0 0 chr9 77767610 77767635 -46308537 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 4 1178 503 275 92 29 chr9 77768080 77768286 -46307886 - ID_B1 SINE B4 -4 220 2 4 1178 222 62 0 0 chr9 77769216 77769248 -46306924 + (C)n Simple_repeat Simple_repeat 1 32 0 4 1178 563 289 25 95 chr9 77769982 77770265 -46305907 + B4 SINE B4 28 290 -2 4 1178 21 0 0 0 chr9 77773169 77773190 -46302982 + AT_rich Low_complexity Low_complexity 1 21 0 4 1178 216 293 17 0 chr9 77773391 77773449 -46302723 - ID4 SINE ID -20 63 5 4 1178 255 31 0 0 chr9 77773467 77773499 -46302673 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1178 207 0 0 0 chr9 77773499 77773521 -46302651 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 4 1178 268 232 50 28 chr9 77773530 77773638 -46302534 - B1F SINE Alu -4 145 3 4 1178 475 129 24 0 chr9 77775139 77775224 -46300948 + B1_Mur4 SINE Alu 28 114 -36 4 1178 1081 285 136 22 chr9 77775874 77776330 -46299842 - Lx8 LINE L1 -150 7323 6816 4 1178 21 36 0 0 chr9 77776383 77776411 -46299761 + AT_rich Low_complexity Low_complexity 1 28 0 4 1178 1702 243 97 65 chr9 77776854 77777496 -46298676 - RCHARR1 DNA MER1_type -277 697 36 4 1178 369 0 0 0 chr9 77778332 77778373 -46297799 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1178 590 194 47 31 chr9 77778424 77778552 -46297620 - B1_Mur2 SINE Alu -16 133 4 4 1178 1138 159 81 5 chr9 77778927 77779136 -46297036 - URR1A DNA MER1_type 0 226 2 4 1178 298 325 0 31 chr9 77781334 77781464 -46294708 + CT-rich Low_complexity Low_complexity 1 126 0 4 1178 816 186 0 0 chr9 77781465 77781642 -46294530 + (TA)n Simple_repeat Simple_repeat 2 178 0 4 1178 808 143 98 0 chr9 77781663 77781796 -46294376 - B1_Mus2 SINE Alu 0 147 2 4 1178 480 281 16 0 chr9 77782254 77782375 -46293797 + B3A SINE B2 1 123 -75 4 1178 828 169 162 37 chr9 77782382 77782573 -46293599 + B3 SINE B2 1 215 -1 4 1178 308 183 100 0 chr9 77783388 77783448 -46292724 + PB1D9 SINE Alu 54 119 -1 4 1178 330 87 0 0 chr9 77783448 77783494 -46292678 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1178 227 311 44 62 chr9 77783846 77783959 -46292213 + Charlie5 DNA MER1_type 2 112 -2512 4 1178 239 190 0 17 chr9 77784035 77784094 -46292078 + CT-rich Low_complexity Low_complexity 1 58 0 4 1178 543 169 0 0 chr9 77784112 77784201 -46291971 - RMER15 LTR ERVL -44 531 443 4 1178 943 223 219 18 chr9 77784212 77784495 -46291677 - RMER15 LTR ERVL -235 340 1 4 1178 304 270 261 8 chr9 77784623 77784866 -46291306 - L1MA5 LINE L1 -6 6294 5991 4 1178 459 52 0 0 chr9 77784913 77784971 -46291201 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1178 249 218 114 38 chr9 77785124 77785229 -46290943 - L1MA5 LINE L1 -305 5995 5883 4 1178 268 263 105 5 chr9 77785622 77785718 -46290454 - L1MA5 LINE L1 -896 5407 5307 4 1178 540 298 126 28 chr9 77786274 77786876 -46289296 + L1MA5 LINE L1 5625 6300 0 4 1178 180 343 49 29 chr9 77787625 77787727 -46288445 + MIRb SINE MIR 115 218 -50 4 1178 634 272 30 71 chr9 77788577 77788775 -46287397 + B3A SINE B2 9 198 0 4 1178 225 274 66 15 chr9 77788762 77788899 -46287273 + ORR1B1-int LTR MaLR 611 754 -755 4 1178 857 152 43 0 chr9 77788801 77788939 -46287233 + B1_Mur1 SINE Alu 6 149 0 4 1178 207 133 0 0 chr9 77789272 77789317 -46286855 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 4 1178 214 273 228 49 chr9 77790006 77790058 -46286114 - B4A SINE B4 -21 271 117 4 1178 398 166 103 34 chr9 77790058 77790158 -46286014 - PB1D9 SINE Alu -7 113 8 4 1178 22 35 0 0 chr9 77790227 77790256 -46285916 + AT_rich Low_complexity Low_complexity 1 29 0 4 1178 226 140 50 42 chr9 77790665 77790784 -46285388 + (CCCA)n Simple_repeat Simple_repeat 4 123 0 4 1178 29 0 0 0 chr9 77791190 77791219 -46284953 + AT_rich Low_complexity Low_complexity 1 29 0 4 1178 422 257 224 0 chr9 77791329 77791508 -46284664 - L1MD1 LINE L1 -210 6032 5814 4 1178 277 287 23 0 chr9 77791602 77791689 -46284483 + CT-rich Low_complexity Low_complexity 3 91 0 4 1178 1972 251 133 36 chr9 77791718 77792438 -46283734 - Lx8 LINE L1 -409 7064 6275 4 1178 260 313 111 15 chr9 77792428 77792626 -46283546 - L1MD LINE L1 -505 5854 5638 4 1178 618 167 20 0 chr9 77793522 77793624 -46282548 + B1_Mur1 SINE Alu 46 149 0 4 1178 221 307 67 0 chr9 77794440 77794515 -46281657 + MER5B DNA MER1_type 93 172 -6 4 1178 201 39 0 0 chr9 77794733 77794759 -46281413 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1178 603 143 214 0 chr9 77794804 77794916 -46281256 + B1_Mus1 SINE Alu 2 137 -11 4 1178 500 266 218 6 chr9 77795466 77795636 -46280536 - Tigger5 DNA MER2_type -2164 242 37 4 1178 557 258 73 55 chr9 77795658 77795822 -46280350 + B3A SINE B2 23 189 -9 4 1178 410 262 111 0 chr9 77796217 77796343 -46279829 - MIR SINE MIR -112 150 11 4 1178 386 39 19 0 chr9 77796951 77797003 -46279169 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1178 1189 49 21 0 chr9 77797028 77797171 -46279001 - B1_Mus2 SINE Alu -1 146 1 4 1178 279 253 219 10 chr9 77797697 77797793 -46278379 + PB1D10 SINE Alu 1 116 -1 4 1178 272 187 89 51 chr9 77798520 77798599 -46277573 - B1F SINE Alu 0 149 68 4 1178 3664 10 43 0 chr9 77799397 77799812 -46276360 - L1Md_A LINE L1 0 6582 6150 4 1178 192 77 0 0 chr9 77800135 77800161 -46276011 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4 1178 324 244 0 39 chr9 77800189 77800280 -46275892 - B3 SINE B2 -66 132 54 4 1178 404 202 38 0 chr9 77800469 77800548 -46275624 + B1F1 SINE Alu 7 88 -61 4 1178 182 108 54 0 chr9 77801045 77801082 -46275090 + (CAGG)n Simple_repeat Simple_repeat 3 41 0 4 1178 238 312 57 89 chr9 77801681 77801775 -46274397 - Tigger7 DNA MER2_type 0 2491 2402 4 1178 297 51 0 0 chr9 77801775 77801814 -46274358 + (TCTG)n Simple_repeat Simple_repeat 3 41 0 4 1178 603 320 162 34 chr9 77801814 77802165 -46274007 - Tigger7 DNA MER2_type -2079 412 36 4 1178 421 173 86 40 chr9 77803708 77803827 -46272345 - B1F1 SINE Alu -3 146 2 4 1178 420 71 0 0 chr9 77804214 77804270 -46271902 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1178 601 247 66 7 chr9 77804304 77804455 -46271717 + RSINE1 SINE B4 4 163 -2 4 1178 25 31 0 0 chr9 77804456 77804488 -46271684 + AT_rich Low_complexity Low_complexity 1 32 0 4 1178 310 266 17 42 chr9 77805394 77805512 -46270660 - PB1D7 SINE Alu -3 117 3 4 1178 401 90 224 0 chr9 77805823 77805890 -46270282 - B1_Mus1 SINE Alu -61 87 6 5 1178 318 171 14 54 chr9 77805826 77805900 -46270272 - B4 SINE B4 -141 151 81 5 1178 449 318 67 60 chr9 77806094 77806378 -46269794 - ORR1E LTR MaLR -25 334 49 5 1178 457 316 45 0 chr9 77806833 77806966 -46269206 + B1F SINE Alu 9 147 -2 5 1178 1443 123 32 5 chr9 77807965 77808185 -46267987 + URR1A DNA MER1_type 1 226 0 5 1178 311 241 167 18 chr9 77810009 77810123 -46266049 - L1MEg LINE L1 -4113 1971 1841 5 1178 265 158 34 34 chr9 77811787 77811846 -46264326 + MTE2b LTR MaLR 287 345 -34 5 1178 462 299 34 2 chr9 77812710 77812885 -46263287 - B4A SINE B4 -109 183 1 5 1178 253 298 94 19 chr9 77812913 77812952 -46263220 + B1F SINE Alu 36 149 0 5 1178 337 224 15 0 chr9 77812952 77813019 -46263153 + ID_B1 SINE B4 154 221 -3 5 1178 249 331 49 56 chr9 77813056 77813200 -46262972 - Kanga2_a DNA Tc2 -596 292 150 5 1178 437 301 80 70 chr9 77813772 77813972 -46262200 + RMER30 DNA MER1_type 1 202 0 5 1178 219 139 0 0 chr9 77814309 77814345 -46261827 + (TCTCCC)n Simple_repeat Simple_repeat 6 41 0 5 1178 399 236 57 20 chr9 77814345 77814470 -46261702 - PB1D9 SINE Alu -16 131 9 5 1178 259 271 59 44 chr9 77814389 77814524 -46261648 - ID_B1 SINE B4 -52 172 36 5 1178 225 0 0 0 chr9 77816324 77816349 -46259823 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1178 943 159 31 0 chr9 77816566 77816729 -46259443 + URR1A DNA MER1_type 59 226 0 5 1178 736 190 29 0 chr9 77818048 77818185 -46257987 - B1_Mur1 SINE Alu -8 141 1 5 1178 1667 204 47 10 chr9 77819150 77819571 -46256601 - RLTR20B3 LTR ERVK -106 471 1 5 1178 180 263 17 17 chr9 77819706 77819764 -46256408 + MER5B DNA MER1_type 103 160 -18 5 1178 250 321 63 35 chr9 77819892 77820034 -46256138 - MER5A DNA MER1_type -34 155 10 5 1178 220 281 67 19 chr9 77820100 77820205 -46255967 - MER5A DNA MER1_type -74 115 6 5 1178 3020 26 6 0 chr9 77820602 77820946 -46255226 - ORR1A0 LTR MaLR 0 346 1 5 1178 14430 50 6 1 chr9 77820946 77822730 -46253442 - ORR1A0-int LTR MaLR 0 1792 1 5 1178 2977 35 0 0 chr9 77822734 77823076 -46253096 - ORR1A0 LTR MaLR -4 342 1 5 1178 273 353 12 12 chr9 77823132 77823218 -46252954 + MER5A DNA MER1_type 4 89 -100 5 1178 419 242 121 0 chr9 77824285 77824384 -46251788 - ID_B1 SINE B4 -3 221 111 5 1178 295 263 154 26 chr9 77824384 77824398 -46251774 - B1F2 SINE Alu -1 144 17 5 1178 258 32 0 0 chr9 77824859 77824890 -46251282 + (TTA)n Simple_repeat Simple_repeat 2 32 0 5 1178 383 339 26 5 chr9 77825030 77825220 -46250952 + Lx7 LINE L1 4677 4870 -1273 5 1178 316 320 32 8 chr9 77825245 77825368 -46250804 + Lx7 LINE L1 5294 5419 -754 5 1178 398 295 211 10 chr9 77825585 77825905 -46250267 + Lx7 LINE L1 5501 5945 -346 5 1178 554 286 45 25 chr9 77826177 77826378 -46249794 + L1M2 LINE L1 4897 5101 -1042 5 1178 488 241 0 0 chr9 77826503 77826590 -46249582 + RSINE1 SINE B4 22 108 -57 5 1178 23 33 0 0 chr9 77828544 77828574 -46247598 + AT_rich Low_complexity Low_complexity 1 30 0 5 1178 192 40 0 0 chr9 77831527 77831552 -46244620 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1178 1320 235 156 79 chr9 77832442 77832936 -46243236 - MT2A LTR ERVL 0 533 2 5 1178 369 0 0 0 chr9 77833344 77833385 -46242787 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1178 396 0 0 0 chr9 77833431 77833475 -46242697 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1178 229 277 146 21 chr9 77833870 77833966 -46242206 + B1F2 SINE Alu 34 141 -8 5 1178 270 261 65 43 chr9 77834233 77834325 -46241847 - LTR79 LTR ERVL -364 163 70 5 1178 308 265 0 29 chr9 77834830 77834935 -46241237 - L1MA4A LINE L1 -429 5874 5773 5 1178 201 74 0 0 chr9 77835132 77835159 -46241013 + (CATA)n Simple_repeat Simple_repeat 2 28 0 5 1178 354 23 0 0 chr9 77835159 77835202 -46240970 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1178 495 48 0 0 chr9 77835220 77835282 -46240890 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 5 1178 1161 49 21 0 chr9 77835282 77835425 -46240747 - B1_Mus2 SINE Alu -1 146 1 5 1178 853 73 283 7 chr9 77835549 77835687 -46240485 + B2_Mm2 SINE B2 1 176 -19 5 1178 1227 286 173 20 chr9 77835688 77836496 -46239676 - L1MA4A LINE L1 -2042 4101 3195 5 1178 231 36 0 0 chr9 77836496 77836524 -46239648 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1178 1227 286 173 20 chr9 77836524 77836584 -46239588 - L1MA4A LINE L1 -2949 3194 3100 5 1178 777 244 53 5 chr9 77838513 77838719 -46237453 - B3 SINE B2 0 216 1 5 1178 199 93 0 44 chr9 77839108 77839153 -46237019 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 1178 39 50 0 0 chr9 77841269 77841329 -46234843 + AT_rich Low_complexity Low_complexity 1 60 0 5 1178 597 338 46 32 chr9 77841395 77841615 -46234557 - B4A SINE B4 -2 290 77 5 1178 2982 58 50 3 chr9 77841615 77841997 -46234175 - MTB LTR MaLR 0 400 1 5 1178 597 338 46 32 chr9 77841997 77842060 -46234112 - B4A SINE B4 -216 76 3 5 1178 240 35 0 0 chr9 77842311 77842340 -46233832 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1178 1224 41 0 0 chr9 77842340 77842477 -46233695 - B1_Mus2 SINE Alu -9 138 2 5 1178 306 0 0 0 chr9 77842756 77842790 -46233382 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 5 1178 1029 176 102 10 chr9 77843341 77843547 -46232625 + URR1A DNA MER1_type 2 226 0 5 1178 342 115 11 33 chr9 77843946 77844036 -46232136 + T-rich Low_complexity Low_complexity 3 90 0 5 1178 8231 59 0 1 chr9 77844051 77845191 -46230981 - L1_Mus1 LINE L1 0 6567 5428 5 1178 6026 95 7 5 chr9 77845189 77846043 -46230129 + L1_Mus1 LINE L1 4546 5401 -482 5 1178 212 309 18 0 chr9 77846145 77846200 -46229972 + B1F2 SINE Alu 5 60 -89 5 1178 1169 42 20 14 chr9 77846458 77846604 -46229568 + B1_Mus2 SINE Alu 1 147 0 5 1178 1296 75 40 0 chr9 77846608 77846781 -46229391 - B2_Mm2 SINE B2 -14 181 2 5 1178 398 289 70 55 chr9 77846936 77847064 -46229108 - RSINE1 SINE B4 -35 130 1 5 1178 506 267 46 20 chr9 77847239 77847434 -46228738 - L1M2 LINE L1 -858 5285 5086 5 1178 756 52 0 0 chr9 77848134 77848231 -46227941 + (TCCC)n Simple_repeat Simple_repeat 4 100 0 5 1178 223 242 265 30 chr9 77848324 77848456 -46227716 + L2a LINE L2 3070 3232 -194 5 1178 554 245 76 90 chr9 77849130 77849341 -46226831 + ID_B1 SINE B4 2 209 -15 5 1178 241 91 0 0 chr9 77849993 77850026 -46226146 + ORR1D2 LTR MaLR 330 362 -8 5 1178 971 133 14 22 chr9 77850031 77850251 -46225921 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 5 1178 2923 59 56 3 chr9 77850251 77850627 -46225545 - MTA_Mm LTR MaLR 0 396 1 5 1178 971 190 3 3 chr9 77850627 77850985 -46225187 + (TGGA)n Simple_repeat Simple_repeat 1 357 0 5 1178 603 40 0 0 chr9 77851389 77851463 -46224709 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 1178 1446 138 4 9 chr9 77851480 77851706 -46224466 - URR1B DNA MER1_type 0 225 1 5 1178 257 137 0 38 chr9 77852465 77852518 -46223654 + GA-rich Low_complexity Low_complexity 4 54 0 5 1178 763 150 163 0 chr9 77852923 77853076 -46223096 + ORR1B1 LTR MaLR 1 178 -216 5 1178 237 236 83 73 chr9 77853028 77853124 -46223048 + ID_B1 SINE B4 126 222 -2 5 1178 229 189 53 70 chr9 77853073 77853130 -46223042 + PB1D7 SINE Alu 65 120 0 5 1178 636 272 6 41 chr9 77853256 77853425 -46222747 + RSINE1 SINE B4 3 165 0 5 1178 836 222 19 12 chr9 77853467 77853627 -46222545 - B3 SINE B2 -54 162 2 5 1178 716 0 12 0 chr9 77853680 77853764 -46222408 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 5 1178 326 47 52 78 chr9 77854989 77855104 -46221068 + (TTTG)n Simple_repeat Simple_repeat 1 112 0 5 1178 522 30 15 0 chr9 77855104 77855170 -46221002 - B1_Mus2 SINE Alu -1 146 80 5 1178 387 0 0 0 chr9 77855359 77855402 -46220770 + (TAA)n Simple_repeat Simple_repeat 3 45 0 5 1178 982 193 24 24 chr9 77855632 77855844 -46220328 - B3 SINE B2 -3 213 2 5 1178 575 26 26 0 chr9 77855846 77855922 -46220250 + (TTGG)n Simple_repeat Simple_repeat 2 79 0 5 1178 201 171 0 24 chr9 77855932 77855974 -46220198 + T-rich Low_complexity Low_complexity 5 45 0 5 1178 333 0 0 0 chr9 77856260 77856297 -46219875 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5 1178 945 228 5 5 chr9 77856297 77856482 -46219690 - B3 SINE B2 -31 185 1 5 1178 636 244 7 15 chr9 77856597 77856734 -46219438 - ID_B1 SINE B4 -4 220 85 5 1179 393 255 18 54 chr9 77857203 77857228 -46218944 - PB1D10 SINE Alu -9 108 1 5 1179 405 253 11 0 chr9 77857228 77857315 -46218857 - ID_B1 SINE B4 -55 169 82 5 1179 324 250 204 0 chr9 77857780 77857868 -46218304 - PB1D10 SINE Alu -10 107 2 5 1179 256 291 43 68 chr9 77857952 77858114 -46218058 + MER5A DNA MER1_type 1 158 -31 5 1179 457 250 133 0 chr9 77858195 77858315 -46217857 - ID_B1 SINE B4 -2 222 87 5 1179 228 336 8 60 chr9 77858472 77858589 -46217583 - Tigger5 DNA MER2_type -2287 119 9 5 1179 906 242 44 106 chr9 77858940 77859300 -46216872 - RLTR12B LTR ERVK -6 522 185 5 1179 1046 105 93 6 chr9 77859284 77859456 -46216716 + B2_Mm2 SINE B2 9 195 0 5 1179 27 0 0 0 chr9 77859859 77859886 -46216286 + AT_rich Low_complexity Low_complexity 1 27 0 5 1179 457 261 52 13 chr9 77859902 77859932 -46216240 - RSINE1 SINE B4 -2 163 126 5 1179 456 35 0 0 chr9 77859932 77859990 -46216182 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1179 457 261 52 13 chr9 77859990 77860114 -46216058 - RSINE1 SINE B4 -40 125 4 5 1179 3365 190 51 188 chr9 77860460 77861622 -46214550 - RMER1B Other Other -3 1063 61 5 1179 341 291 38 104 chr9 77861970 77862023 -46214149 + L1MA5 LINE L1 6095 6134 -166 5 1179 467 179 110 28 chr9 77862023 77862132 -46214040 - PB1D9 SINE Alu 0 120 3 5 1179 341 291 38 104 chr9 77862132 77862289 -46213883 + L1MA5 LINE L1 6135 6291 -9 5 1179 522 187 3 3 chr9 77862674 77862786 -46213386 - B1_Mur2 SINE Alu -7 113 1 5 1179 294 271 9 103 chr9 77862691 77862798 -46213374 - MT2B LTR ERVL -353 248 152 5 1179 310 311 18 45 chr9 77862836 77862857 -46213315 + ID SINE ID 61 78 -146 5 1179 446 243 26 11 chr9 77862857 77862968 -46213204 + B1F SINE Alu 1 120 0 6 1179 477 309 39 93 chr9 77863167 77863349 -46212823 + B4A SINE B4 86 257 -35 6 1179 180 0 0 0 chr9 77863369 77863389 -46212783 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1179 470 258 90 134 chr9 77863422 77863699 -46212473 + B4A SINE B4 15 279 -13 6 1179 378 0 0 0 chr9 77863725 77863767 -46212405 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1179 213 176 0 56 chr9 77864776 77864830 -46211342 + CT-rich Low_complexity Low_complexity 4 54 0 6 1179 232 264 142 26 chr9 77865773 77865797 -46210375 + B1_Mur4 SINE Alu 18 143 -7 6 1179 260 218 112 22 chr9 77865797 77865886 -46210286 + ID_B1 SINE B4 121 217 -7 6 1179 269 247 128 53 chr9 77865950 77866044 -46210128 + PB1D10 SINE Alu 17 117 0 6 1179 738 138 35 0 chr9 77866204 77866378 -46209794 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1179 310 132 28 56 chr9 77866391 77866463 -46209709 + HAL1-3A_ME LINE L1 1976 2045 -813 6 1179 1527 63 0 5 chr9 77867127 77867318 -46208854 - B2_Mm2 SINE B2 -3 192 3 6 1179 3652 225 75 15 chr9 77867465 77868276 -46207896 - RMER1C Other Other -14 1328 469 6 1179 234 254 51 0 chr9 77868278 77868337 -46207835 + tRNA-Leu-CTA tRNA tRNA 1 62 -23 6 1179 818 209 86 62 chr9 77868629 77868838 -46207334 + B3 SINE B2 3 216 0 6 1179 602 359 34 0 chr9 77870108 77870317 -46205855 - Tigger7 DNA MER2_type -2244 247 32 6 1179 1553 53 5 0 chr9 77870677 77870867 -46205305 - B2_Mm1t SINE B2 -1 192 2 6 1179 497 320 16 8 chr9 77871173 77871302 -46204870 - RSINE1 SINE B4 -28 137 8 6 1179 1227 54 0 0 chr9 77871922 77872069 -46204103 + B1_Mus2 SINE Alu 1 147 0 6 1179 540 193 73 0 chr9 77872131 77872240 -46203932 - PB1D10 SINE Alu 0 117 1 6 1179 360 237 6 11 chr9 77872400 77872575 -46203597 + (TG)n Simple_repeat Simple_repeat 2 175 0 6 1179 189 107 0 0 chr9 77873019 77873047 -46203125 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1179 230 95 0 23 chr9 77873177 77873220 -46202952 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 1179 243 217 45 67 chr9 77873884 77873973 -46202199 + RMER1C Other Other 1251 1337 -5 6 1179 1012 178 91 5 chr9 77873973 77874171 -46202001 + B3 SINE B2 2 216 0 6 1179 620 156 28 23 chr9 77874174 77874351 -46201821 + (TA)n Simple_repeat Simple_repeat 2 179 0 6 1179 878 294 7 60 chr9 77874372 77874654 -46201518 + B4 SINE B4 8 274 -18 6 1179 441 84 0 0 chr9 77875354 77875425 -46200747 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1179 237 119 0 0 chr9 77875559 77875601 -46200571 + (ATG)n Simple_repeat Simple_repeat 2 43 0 6 1179 550 155 171 6 chr9 77875606 77875757 -46200415 + ORR1A2 LTR MaLR 13 203 -143 6 1179 1866 47 4 0 chr9 77876056 77876290 -46199882 + ORR1A2 LTR MaLR 93 327 0 6 1179 6191 152 81 3 chr9 77876290 77877459 -46198713 + ORR1A2-int LTR MaLR 1 1260 -703 6 1179 510 70 0 0 chr9 77877459 77877530 -46198642 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1179 629 218 6 174 chr9 77877553 77877731 -46198441 + B1F SINE Alu 2 149 0 6 1179 568 280 112 22 chr9 77877796 77878063 -46198109 - B4A SINE B4 0 292 2 6 1179 462 259 0 67 chr9 77878103 77878213 -46197959 + PB1D7 SINE Alu 9 111 -9 6 1179 315 0 0 0 chr9 77878213 77878248 -46197924 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1179 327 322 158 35 chr9 77879214 77879487 -46196685 - L2a LINE L2 -256 3170 2887 6 1179 703 159 209 47 chr9 77879487 77879678 -46196494 + URR1A DNA MER1_type 5 226 0 6 1179 327 314 175 46 chr9 77879678 77879895 -46196277 - L2a LINE L2 -533 2886 2616 6 1179 556 267 52 7 chr9 77880102 77880238 -46195934 - B1_Mur1 SINE Alu 0 149 8 6 1179 239 191 0 139 chr9 77880856 77880935 -46195237 - LTR85a LTR Gypsy? -633 69 2 6 1179 468 330 64 9 chr9 77880935 77881111 -46195061 + Cheshire DNA MER1_type 102 289 -2131 6 1179 1011 97 0 0 chr9 77881159 77881304 -46194868 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 6 1179 379 267 0 0 chr9 77881548 77881623 -46194549 - B3A SINE B2 -121 77 3 6 1179 2069 169 35 5 chr9 77881925 77882301 -46193871 + MTC LTR MaLR 35 421 0 6 1179 242 283 61 68 chr9 77882368 77882531 -46193641 - L2a LINE L2 -1152 2267 2106 6 1179 227 298 0 0 chr9 77882549 77882606 -46193566 - RSINE1 SINE B4 -107 58 2 6 1179 257 310 167 14 chr9 77882608 77882752 -46193420 + MER58A DNA MER1_type 59 224 0 6 1179 189 340 91 9 chr9 77882786 77882896 -46193276 + L2 LINE L2 1685 1803 -1616 6 1179 359 245 32 11 chr9 77883049 77883144 -46193028 + PB1D10 SINE Alu 2 98 -19 6 1179 235 284 176 33 chr9 77883156 77883309 -46192863 + L2 LINE L2 1917 2091 -1328 6 1179 338 353 10 10 chr9 77883312 77883415 -46192757 + RSINE1 SINE B4 61 163 -2 6 1179 264 59 0 0 chr9 77884776 77884810 -46191362 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 6 1179 231 283 16 131 chr9 77885009 77885131 -46191041 + MER33 DNA MER1_type 217 324 0 6 1179 273 332 103 21 chr9 77885426 77885660 -46190512 - L2 LINE L2 -1003 2416 2164 6 1179 898 138 6 6 chr9 77885934 77886095 -46190077 + (GAA)n Simple_repeat Simple_repeat 3 163 0 6 1179 251 320 140 49 chr9 77886095 77886423 -46189749 - L2 LINE L2 -1617 1802 1445 6 1179 244 235 39 0 chr9 77886535 77886586 -46189586 + B4A SINE B4 18 70 -222 6 1179 350 280 98 29 chr9 77886616 77886825 -46189347 + RSINE1 SINE B4 6 272 -20 6 1179 599 0 14 0 chr9 77886841 77886912 -46189260 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1179 812 198 85 12 chr9 77887991 77888040 -46188132 - B3 SINE B2 -4 212 157 6 1179 423 0 0 0 chr9 77888040 77888087 -46188085 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1179 396 0 0 0 chr9 77888087 77888130 -46188042 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1179 812 198 85 12 chr9 77888130 77888243 -46187929 - B3 SINE B2 -60 156 38 6 1179 276 322 0 54 chr9 77888238 77888330 -46187842 + ID_B1 SINE B4 132 218 -6 6 1179 273 228 18 0 chr9 77888392 77888449 -46187723 + B3 SINE B2 1 58 -158 6 1179 186 250 262 0 chr9 77888574 77888654 -46187518 + L3 LINE CR1 3761 3861 -628 6 1179 576 0 0 0 chr9 77888739 77888803 -46187369 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1179 234 329 14 28 chr9 77889128 77889200 -46186972 + tRNA-Ala-GCY_ tRNA tRNA 1 71 -4 6 1179 391 345 97 0 chr9 77889235 77889473 -46186699 + L1MB1 LINE L1 5732 5992 -197 6 1179 501 255 7 58 chr9 77889688 77889842 -46186330 - B3A SINE B2 -52 146 1 6 1179 196 53 53 0 chr9 77889849 77889887 -46186285 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1179 402 197 0 40 chr9 77889899 77889973 -46186199 - PB1D7 SINE Alu 0 120 50 6 1179 242 252 74 83 chr9 77890042 77890163 -46186009 + PB1D7 SINE Alu 1 120 0 6 1179 518 339 35 35 chr9 77891133 77891362 -46184810 + Charlie1b DNA MER1_type 48 276 -247 6 1179 1568 157 14 34 chr9 77891362 77891659 -46184513 + Lx5 LINE L1 6713 7003 -47 6 1179 556 231 9 9 chr9 77891812 77891921 -46184251 + B1_Mus1 SINE Alu 19 127 -21 6 1179 317 318 39 0 chr9 77891920 77892049 -46184123 + Charlie1b DNA MER1_type 388 521 -2 6 1179 1212 49 0 0 chr9 77892080 77892224 -46183948 + B1_Mm SINE Alu 1 144 -3 6 1179 1303 171 14 5 chr9 77892265 77892488 -46183684 - URR1A DNA MER1_type -1 225 1 6 1179 2643 34 9 3 chr9 77892576 77892898 -46183274 + L1Md_F2 LINE L1 6258 6581 -1 6 1179 292 285 67 89 chr9 77893164 77893299 -46182873 + B1F2 SINE Alu 18 149 0 6 1179 260 200 53 23 chr9 77893557 77893690 -46182482 + (TA)n Simple_repeat Simple_repeat 2 138 0 6 1179 246 62 0 0 chr9 77893697 77893729 -46182443 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1179 239 222 46 31 chr9 77893818 77893883 -46182289 - B4 SINE B4 -215 77 12 6 1179 250 293 109 39 chr9 77893895 77894023 -46182149 - B1F SINE Alu -10 139 3 6 1179 264 274 56 9 chr9 77894191 77894298 -46181874 + L1M3 LINE L1 5764 5875 -308 6 1179 1264 137 28 14 chr9 77894300 77894514 -46181658 + URR1B DNA MER1_type 1 217 -8 6 1179 383 172 112 22 chr9 77895148 77895237 -46180935 + PB1D9 SINE Alu 18 114 -6 6 1179 380 333 0 70 chr9 77895422 77895564 -46180608 - RSINE1 SINE B4 -33 132 1 6 1179 183 42 0 0 chr9 77896011 77896035 -46180137 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 6 1179 221 0 35 0 chr9 77896142 77896171 -46180001 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 1179 339 277 137 11 chr9 77896173 77896268 -46179904 - ID_B1 SINE B4 -6 218 112 6 1179 250 269 104 61 chr9 77896175 77896290 -46179882 - PB1 SINE Alu -7 120 1 6 1179 209 330 64 55 chr9 77897436 77897545 -46178627 + MIR SINE MIR 89 198 -64 6 1179 418 270 0 51 chr9 77898362 77898479 -46177693 + ID_B1 SINE B4 114 224 0 6 1179 180 0 0 0 chr9 77899504 77899524 -46176648 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1179 357 165 95 60 chr9 77901036 77901049 -46175123 + RLTR18B LTR ERVK 266 276 -236 6 1179 1337 61 11 43 chr9 77901049 77901236 -46174936 - B2_Mm2 SINE B2 -14 181 1 6 1179 357 165 95 60 chr9 77901236 77901306 -46174866 + RLTR18B LTR ERVK 277 352 -160 6 1179 510 291 62 21 chr9 77901306 77901450 -46174722 - RSINE1 SINE B4 0 165 16 6 1179 368 206 164 67 chr9 77901461 77901565 -46174607 - PB1D7 SINE Alu -6 114 1 6 1179 402 278 31 0 chr9 77902329 77902426 -46173746 - B1F SINE Alu -12 137 38 6 1179 324 0 0 0 chr9 77903173 77903209 -46172963 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1179 734 215 0 32 chr9 77903616 77903770 -46172402 - B1_Mur1 SINE Alu 0 149 1 6 1179 180 0 0 0 chr9 77903774 77903794 -46172378 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1179 1618 42 0 0 chr9 77904064 77904256 -46171916 + B2_Mm1a SINE B2 2 193 0 6 1179 354 330 17 17 chr9 77904328 77904448 -46171724 - PB1D7 SINE Alu 0 120 1 6 1179 255 319 179 14 chr9 77904448 77904463 -46171709 - B4A SINE B4 -59 228 71 6 1179 349 256 49 0 chr9 77905511 77905593 -46170579 + B3A SINE B2 4 89 -109 7 1179 266 286 117 25 chr9 77906285 77906419 -46169753 - MIRb SINE MIR -16 252 98 7 1179 983 149 11 33 chr9 77907036 77907216 -46168956 + URR1B DNA MER1_type 30 205 -20 7 1179 1147 15 24 33 chr9 77907806 77908140 -46168032 + (CA)n Simple_repeat Simple_repeat 1 330 0 7 1179 195 69 0 0 chr9 77908172 77908201 -46167971 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1179 810 217 44 6 chr9 77908943 77909124 -46167048 - Lx5 LINE L1 -7 7043 6856 7 1179 980 177 6 6 chr9 77910848 77911024 -46165148 - URR1A DNA MER1_type -3 223 48 7 1179 333 155 0 0 chr9 77911170 77911228 -46164944 + (TTG)n Simple_repeat Simple_repeat 2 59 0 7 1179 225 286 92 67 chr9 77912940 77913060 -46163112 - Charlie24 DNA MER1_type -1153 1297 1175 7 1179 818 196 0 0 chr9 77913091 77913229 -46162943 + B1_Mur2 SINE Alu 2 139 -10 7 1179 1052 134 0 11 chr9 77913244 77913425 -46162747 + (GAA)n Simple_repeat Simple_repeat 2 180 0 7 1179 216 0 0 0 chr9 77913453 77913477 -46162695 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1179 546 223 0 9 chr9 77914052 77914165 -46162007 + PB1D7 SINE Alu 5 116 -4 7 1179 593 263 51 0 chr9 77915057 77915194 -46160978 + RSINE1 SINE B4 20 163 -2 7 1179 1032 144 36 77 chr9 77915628 77915774 -46160398 + B2_Mm2 SINE B2 1 146 -49 7 1179 1668 26 5 0 chr9 77915774 77915966 -46160206 + B2_Mm1t SINE B2 1 193 0 7 1179 1032 144 36 77 chr9 77915966 77916015 -46160157 + B2_Mm2 SINE B2 147 188 -7 7 1179 858 229 50 16 chr9 77916387 77916569 -46159603 + B3A SINE B2 2 189 -9 7 1179 219 252 0 0 chr9 77917256 77917367 -46158805 + (CA)n Simple_repeat Simple_repeat 2 112 0 7 1179 383 195 8 0 chr9 77917421 77917549 -46158623 + (CA)n Simple_repeat Simple_repeat 2 130 0 7 1179 1806 182 88 14 chr9 77917596 77917959 -46158213 + MTC LTR MaLR 1 390 -31 7 1179 3191 56 10 32 chr9 77918077 77918486 -46157686 - MTB LTR MaLR 0 400 1 7 1179 1522 316 127 28 chr9 77919285 77920157 -46156015 - Lx8 LINE L1 -5 7468 6510 7 1179 850 275 91 141 chr9 77920357 77920797 -46155375 + MTD LTR MaLR 1 418 -1 7 1179 440 298 17 9 chr9 77920901 77921016 -46155156 - PB1D10 SINE Alu -1 116 1 7 1179 746 184 33 33 chr9 77921115 77921318 -46154854 - B3 SINE B2 0 195 1 7 1179 210 105 0 0 chr9 77921329 77921367 -46154805 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1179 992 88 65 14 chr9 77921374 77921513 -46154659 - B1_Mus1 SINE Alu -2 146 1 7 1179 799 296 82 11 chr9 77921560 77921925 -46154247 - L1M2 LINE L1 -860 5283 4893 7 1179 261 0 0 0 chr9 77922010 77922039 -46154133 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1179 1527 63 0 5 chr9 77922184 77922374 -46153798 + B2_Mm2 SINE B2 2 190 -5 7 1179 1819 114 96 17 chr9 77922428 77922730 -46153442 - RMER1B Other Other -1 1065 740 7 1179 333 0 0 0 chr9 77922999 77923036 -46153136 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 7 1179 214 143 20 20 chr9 77923140 77923190 -46152982 + (TTA)n Simple_repeat Simple_repeat 3 52 0 7 1179 639 276 139 56 chr9 77923265 77923638 -46152534 - L1_Mur3 LINE L1 -2256 3624 3203 7 1179 1412 99 0 5 chr9 77923638 77923831 -46152341 - B2_Mm2 SINE B2 -2 193 2 7 1179 639 276 139 56 chr9 77923831 77923995 -46152177 - L1_Mur3 LINE L1 -2678 3202 3042 7 1179 21 36 0 0 chr9 77924119 77924147 -46152025 + AT_rich Low_complexity Low_complexity 1 28 0 7 1179 621 288 7 13 chr9 77924165 77924320 -46151852 - RSINE1 SINE B4 -8 157 4 7 1179 202 158 53 0 chr9 77925042 77925080 -46151092 + GA-rich Low_complexity Low_complexity 3 42 0 7 1179 1125 122 281 8 chr9 77925603 77925852 -46150320 + MTC LTR MaLR 105 421 0 7 1179 225 0 0 0 chr9 77925927 77925952 -46150220 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1179 818 0 24 32 chr9 77925999 77926125 -46150047 + (CA)n Simple_repeat Simple_repeat 2 126 0 7 1179 351 0 0 0 chr9 77926176 77926215 -46149957 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1179 563 119 178 0 chr9 77926318 77926419 -46149753 + PB1D9 SINE Alu 1 119 -1 7 1179 242 158 0 0 chr9 77926463 77926501 -46149671 + Lx9 LINE L1 7098 7135 -509 7 1179 678 239 77 31 chr9 77926646 77926840 -46149332 - B3 SINE B2 -10 206 4 7 1179 1068 176 61 7 chr9 77926865 77927140 -46149032 + Lx9 LINE L1 5663 6013 -1631 7 1179 5912 197 106 13 chr9 77927176 77928496 -46147676 + Lx9 LINE L1 6192 7634 -10 7 1179 526 214 0 146 chr9 77928499 77928516 -46147656 + ID_B1 SINE B4 78 217 -7 7 1179 758 164 0 88 chr9 77928516 77928663 -46147509 + B1_Mur2 SINE Alu 9 142 -7 7 1179 1124 96 182 0 chr9 77928754 77928941 -46147231 + URR1A DNA MER1_type 6 226 0 7 1179 25 0 0 0 chr9 77929605 77929630 -46146542 + AT_rich Low_complexity Low_complexity 1 25 0 7 1179 223 260 0 0 chr9 77929675 77929725 -46146447 + (TATG)n Simple_repeat Simple_repeat 2 51 0 7 1179 3553 44 7 0 chr9 77930032 77930461 -46145711 - L1Md_F2 LINE L1 -12 6570 6139 7 1179 260 250 37 9 chr9 77930470 77930579 -46145593 - L1M5 LINE L1 -302 5822 5711 7 1179 22 0 0 0 chr9 77930679 77930701 -46145471 + AT_rich Low_complexity Low_complexity 1 22 0 7 1179 1401 85 27 0 chr9 77930710 77930898 -46145274 + B2_Mm2 SINE B2 1 193 -2 7 1179 1220 61 0 0 chr9 77930901 77931048 -46145124 + B1_Mus2 SINE Alu 1 147 0 7 1179 225 0 0 0 chr9 77931048 77931073 -46145099 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1179 679 114 53 15 chr9 77931739 77931872 -46144300 + Lx2 LINE L1 6860 6997 0 7 1179 400 242 26 28 chr9 77932119 77932295 -46143877 - B3 SINE B2 0 216 6 7 1179 498 204 31 0 chr9 77932750 77932864 -46143308 + B1_Mur1 SINE Alu 10 136 -13 7 1179 1202 68 0 0 chr9 77935907 77936054 -46140118 + B1_Mus1 SINE Alu 2 148 0 7 1179 284 269 21 11 chr9 77936168 77936262 -46139910 + L1M4c LINE L1 1689 1783 -4520 7 1179 443 232 71 0 chr9 77937898 77938010 -46138162 + RSINE1 SINE B4 3 122 -43 7 1179 277 276 62 8 chr9 77938012 77938140 -46138032 + L1MA4 LINE L1 5313 5447 -850 7 1179 785 262 115 35 chr9 77938181 77938581 -46137591 + L1MA4 LINE L1 5580 6011 -289 7 1179 2371 77 13 0 chr9 77938582 77938895 -46137277 + ORR1A2 LTR MaLR 11 327 0 7 1179 559 250 22 7 chr9 77939034 77939171 -46137001 + B1F SINE Alu 3 141 -8 7 1179 304 203 169 48 chr9 77939356 77939439 -46136733 + B1F1 SINE Alu 56 148 -1 7 1179 837 226 22 11 chr9 77939693 77939876 -46136296 + B3 SINE B2 27 211 -5 7 1179 594 68 0 0 chr9 77939961 77940049 -46136123 + (GA)n Simple_repeat Simple_repeat 1 88 0 7 1179 314 291 166 27 chr9 77940104 77940291 -46135881 + L1M4c LINE L1 2215 2427 -3957 7 1179 290 233 25 88 chr9 77940293 77940373 -46135799 + RSINE1 SINE B4 91 165 0 7 1179 388 291 82 6 chr9 77940424 77940583 -46135589 + L1M2 LINE L1 5478 5648 -652 7 1179 189 0 0 0 chr9 77940646 77940667 -46135505 + (GA)n Simple_repeat Simple_repeat 1 21 0 7 1179 436 161 21 109 chr9 77940685 77940813 -46135359 - B3A SINE B2 -15 201 82 7 1179 230 247 12 0 chr9 77940813 77940894 -46135278 + L1MA8 LINE L1 6209 6290 -1 7 1179 409 297 111 70 chr9 77941075 77941382 -46134790 + B4A SINE B4 1 292 0 7 1179 25 0 0 0 chr9 77941393 77941418 -46134754 + AT_rich Low_complexity Low_complexity 1 25 0 7 1179 1277 209 12 142 chr9 77941450 77941721 -46134451 + L1_Mur3 LINE L1 4841 5086 -794 7 1179 987 141 207 11 chr9 77941721 77941900 -46134272 + B3 SINE B2 2 215 -1 7 1179 1277 224 27 119 chr9 77941900 77942088 -46134084 + L1_Mur3 LINE L1 5087 5267 -619 7 1179 237 167 0 0 chr9 77942103 77942145 -46134027 - B3A SINE B2 -156 42 1 7 1179 230 51 51 0 chr9 77942849 77942888 -46133284 + (GTTTG)n Simple_repeat Simple_repeat 4 44 0 7 1179 1207 35 14 0 chr9 77944147 77944292 -46131880 - B1_Mm SINE Alu 0 147 1 7 1179 744 185 102 11 chr9 77944316 77944502 -46131670 - B3 SINE B2 -11 205 3 7 1179 675 172 101 29 chr9 77944825 77944963 -46131209 + B1_Mus1 SINE Alu 1 148 0 7 1179 221 180 16 32 chr9 77944964 77945027 -46131145 + A-rich Low_complexity Low_complexity 3 64 0 7 1179 251 262 0 32 chr9 77945339 77945402 -46130770 - ID SINE ID -162 62 2 7 1179 869 162 7 21 chr9 77946531 77946676 -46129496 - B1_Mur4 SINE Alu -6 144 2 7 1179 28 29 0 0 chr9 77947353 77947388 -46128784 + AT_rich Low_complexity Low_complexity 1 35 0 7 1179 457 255 0 10 chr9 77947388 77947491 -46128681 - B1F1 SINE Alu -2 147 46 7 1179 396 220 128 0 chr9 77947708 77947817 -46128355 + ID_B1 SINE B4 81 203 -21 7 1179 30 45 0 0 chr9 77947817 77947861 -46128311 + AT_rich Low_complexity Low_complexity 1 44 0 7 1179 427 258 45 0 chr9 77947896 77948028 -46128144 + L1MD LINE L1 4938 5075 -1071 7 1179 366 224 46 9 chr9 77948350 77948458 -46127714 + B1_Mur1 SINE Alu 37 148 -1 7 1179 1574 67 0 5 chr9 77948459 77948655 -46127517 + B2_Mm2 SINE B2 1 195 0 7 1179 956 223 229 0 chr9 77948813 77949114 -46127058 - ORR1D2 LTR MaLR 0 370 1 7 1179 315 0 0 0 chr9 77949611 77949646 -46126526 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1179 261 0 0 0 chr9 77949646 77949674 -46126498 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1179 629 101 0 39 chr9 77949717 77949820 -46126352 + B1_Mus2 SINE Alu 48 146 -1 7 1179 260 265 86 29 chr9 77950751 77950856 -46125316 - L1M5 LINE L1 -452 5672 5562 7 1179 483 279 56 42 chr9 77951260 77951402 -46124770 + RSINE1 SINE B4 22 165 0 7 1179 23 54 0 0 chr9 77951416 77951453 -46124719 + AT_rich Low_complexity Low_complexity 1 37 0 7 1179 1412 68 5 45 chr9 77951492 77951691 -46124481 + B2_Mm2 SINE B2 1 191 -4 7 1179 266 242 91 100 chr9 77951694 77951804 -46124368 + MT2B LTR ERVL 156 264 -337 7 1179 521 163 108 1 chr9 77951707 77951820 -46124352 + B1_Mus2 SINE Alu 5 127 -20 7 1179 187 135 55 22 chr9 77951851 77951942 -46124230 + A-rich Low_complexity Low_complexity 3 96 0 7 1179 278 237 0 0 chr9 77952435 77952494 -46123678 + B3 SINE B2 38 96 -120 7 1179 594 211 82 8 chr9 77952502 77952636 -46123536 + B1_Mur1 SINE Alu 1 144 -5 8 1179 183 80 0 0 chr9 77953198 77953223 -46122949 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1179 591 200 0 55 chr9 77954265 77954392 -46121780 - B1F SINE Alu -1 148 29 8 1179 424 227 235 0 chr9 77954446 77954578 -46121594 + B3A SINE B2 2 164 -34 8 1179 2511 124 5 12 chr9 77954584 77955001 -46121171 - MTC LTR MaLR 0 421 8 8 1179 225 94 0 0 chr9 77955026 77955058 -46121114 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 1179 875 255 54 25 chr9 77957384 77957625 -46118547 - Lx8 LINE L1 -325 7148 6901 8 1179 22 0 0 0 chr9 77958028 77958050 -46118122 + AT_rich Low_complexity Low_complexity 1 22 0 8 1179 582 277 26 21 chr9 77958165 77958360 -46117812 - B3A SINE B2 -1 215 15 8 1179 685 254 156 55 chr9 77958490 77958727 -46117445 - Lx8 LINE L1 -632 6841 6581 8 1179 718 85 110 8 chr9 77958972 77959090 -46117082 + B3 SINE B2 1 130 -86 8 1179 186 269 39 0 chr9 77960087 77960139 -46116033 + MER5A DNA MER1_type 102 155 -34 8 1179 741 181 14 0 chr9 77960287 77960425 -46115747 - B1_Mur2 SINE Alu -9 140 1 8 1179 1137 120 173 0 chr9 77960457 77960648 -46115524 - URR1B DNA MER1_type -1 224 1 8 1179 387 0 0 0 chr9 77962328 77962371 -46113801 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1179 271 282 28 0 chr9 77963415 77963486 -46112686 - B4A SINE B4 -200 92 20 8 1179 216 0 0 0 chr9 77964021 77964045 -46112127 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1179 1981 113 74 3 chr9 77964183 77964519 -46111653 + ORR1B2 LTR MaLR 3 362 -5 8 1179 562 224 0 18 chr9 77964519 77964628 -46111544 - PB1D7 SINE Alu -13 107 1 8 1179 314 158 421 22 chr9 77964705 77964838 -46111334 - MTD LTR MaLR -14 405 227 8 1179 363 44 0 0 chr9 77964853 77964898 -46111274 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 8 1179 1191 63 0 0 chr9 77964898 77965057 -46111115 - B2_Mm2 SINE B2 -35 160 2 8 1179 330 264 135 23 chr9 77965057 77965216 -46110956 - MTD LTR MaLR -209 210 9 8 1179 729 168 84 0 chr9 77965346 77965477 -46110695 - B1_Mur2 SINE Alu -7 142 1 8 1179 346 262 64 18 chr9 77965484 77965593 -46110579 - PB1D7 SINE Alu -5 115 2 8 1179 347 288 144 0 chr9 77965817 77965928 -46110244 + B1F SINE Alu 2 128 -21 8 1179 1405 66 11 0 chr9 77966450 77966633 -46109539 - B2_Mm1t SINE B2 -7 186 2 8 1179 2664 133 119 13 chr9 77966782 77967260 -46108912 - RLTR24 LTR ERV1 0 529 1 8 1179 434 281 16 8 chr9 77967522 77967644 -46108528 - B1F1 SINE Alu -2 147 25 8 1179 376 200 29 0 chr9 77967736 77967806 -46108366 + B3 SINE B2 137 208 -8 8 1179 338 289 10 49 chr9 77967834 77967936 -46108236 + RSINE1 SINE B4 66 163 -2 8 1179 249 239 183 0 chr9 77967942 77968013 -46108159 + B3 SINE B2 126 209 -7 8 1179 878 252 130 28 chr9 77969095 77969418 -46106754 + MTEb LTR MaLR 23 378 -1 8 1179 288 0 0 0 chr9 77969809 77969841 -46106331 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1179 639 271 101 0 chr9 77970848 77971047 -46105125 - ID_B1 SINE B4 -5 219 1 8 1179 252 302 27 36 chr9 77971466 77971576 -46104596 + ORR1E LTR MaLR 89 197 -162 8 1179 394 324 62 21 chr9 77971599 77971791 -46104381 - RMER30 DNA MER1_type -1 201 2 8 1179 330 87 0 0 chr9 77973242 77973288 -46102884 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 8 1179 243 227 29 29 chr9 77973288 77973356 -46102816 - ID4 SINE ID -6 77 10 8 1179 184 77 25 25 chr9 77973412 77973452 -46102720 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 8 1179 187 258 130 84 chr9 77973919 77974050 -46102122 + L2c LINE L2 3006 3142 -245 8 1179 638 214 35 35 chr9 77975020 77975165 -46101007 + RSINE1 SINE B4 2 146 -19 8 1179 326 280 63 57 chr9 77975982 77976141 -46100031 - MLT1B LTR MaLR -230 160 1 8 1179 294 95 0 0 chr9 77976196 77976238 -46099934 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1179 855 237 79 79 chr9 77976245 77976687 -46099485 + Tigger5 DNA MER2_type 3 397 -21 8 1179 253 291 145 26 chr9 77976715 77976867 -46099305 - L1MC4 LINE L1 -185 7857 7688 8 1179 1311 43 0 0 chr9 77976868 77977030 -46099142 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 8 1179 835 228 124 64 chr9 77977079 77977346 -46098826 + B4A SINE B4 4 286 -6 8 1179 316 160 19 29 chr9 77977364 77977467 -46098705 + (CA)n Simple_repeat Simple_repeat 1 102 0 8 1179 392 294 65 11 chr9 77978181 77978367 -46097805 - L1MC4a LINE L1 -104 7778 7583 8 1179 682 309 74 19 chr9 77979683 77980043 -46096129 - MLT1F2 LTR MaLR -1 679 273 8 1179 527 229 130 23 chr9 77980067 77980250 -46095922 + B3A SINE B2 1 177 -18 8 1179 964 106 42 0 chr9 77980263 77980405 -46095767 - B1_Mur4 SINE Alu -1 149 2 8 1179 472 198 50 0 chr9 77980737 77980838 -46095334 - PB1D10 SINE Alu 0 117 12 8 1179 2176 153 102 8 chr9 77981064 77981447 -46094725 + MTC LTR MaLR 2 420 -1 8 1179 229 287 45 11 chr9 77981508 77981596 -46094576 + LTR16E1 LTR ERVL 399 489 -49 8 1179 639 227 89 23 chr9 77981854 77982095 -46094077 - ORR1D1 LTR MaLR -104 266 12 8 1179 27 0 0 0 chr9 77982203 77982230 -46093942 + AT_rich Low_complexity Low_complexity 1 27 0 8 1179 224 317 0 0 chr9 77982297 77982357 -46093815 + CT-rich Low_complexity Low_complexity 3 62 0 8 1179 1464 193 155 3 chr9 77982610 77982964 -46093208 - MTD LTR MaLR -2 417 10 8 1179 225 0 0 0 chr9 77983043 77983068 -46093104 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 1179 21 36 0 0 chr9 77983068 77983096 -46093076 + AT_rich Low_complexity Low_complexity 1 28 0 8 1179 26 0 0 0 chr9 77983121 77983147 -46093025 + AT_rich Low_complexity Low_complexity 1 26 0 8 1179 508 224 72 114 chr9 77983147 77983313 -46092859 - B3A SINE B2 -38 160 2 8 1179 227 227 13 13 chr9 77983881 77983957 -46092215 + (TTTG)n Simple_repeat Simple_repeat 3 78 0 8 1179 246 300 26 35 chr9 77984002 77984116 -46092056 - PB1D10 SINE Alu -1 116 4 8 1179 241 211 0 19 chr9 77984230 77984283 -46091889 + T-rich Low_complexity Low_complexity 1 52 0 8 1179 285 375 0 0 chr9 77984472 77984584 -46091588 - MER58D DNA MER1_type 0 386 275 8 1179 740 181 23 0 chr9 77984589 77984722 -46091450 + B1_Mur1 SINE Alu 2 137 -12 8 1179 642 26 0 0 chr9 77984722 77984798 -46091374 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 8 1179 672 13 0 0 chr9 77984798 77984874 -46091298 + (GGGA)n Simple_repeat Simple_repeat 2 78 0 8 1179 689 223 22 0 chr9 77984874 77985013 -46091159 + B1_Mur2 SINE Alu 1 142 -7 8 1179 263 122 0 20 chr9 77985013 77985063 -46091109 + (GGA)n Simple_repeat Simple_repeat 1 49 0 8 1179 566 273 40 35 chr9 77985170 77985371 -46090801 + B3 SINE B2 2 203 -13 8 1179 525 71 0 0 chr9 77985371 77985441 -46090731 + (CATA)n Simple_repeat Simple_repeat 3 72 0 8 1179 319 191 0 93 chr9 77985486 77985561 -46090611 - PB1D9 SINE Alu -51 69 2 8 1179 227 313 75 66 chr9 77985561 77985596 -46090576 - B4 SINE B4 -213 79 44 8 1179 240 111 0 0 chr9 77986503 77986539 -46089633 + (TTG)n Simple_repeat Simple_repeat 2 37 0 8 1179 958 135 14 0 chr9 77986547 77986688 -46089484 - B1_Mur4 SINE Alu -6 144 2 8 1180 512 230 31 162 chr9 77987955 77988183 -46087989 - B3A SINE B2 0 198 1 8 1180 322 316 30 113 chr9 77988398 77988483 -46087689 - ID_B1 SINE B4 -7 217 132 8 1180 1017 138 144 0 chr9 77988483 77988678 -46087494 + URR1A DNA MER1_type 1 223 -3 8 1180 322 316 30 113 chr9 77988678 77988760 -46087412 - ID_B1 SINE B4 -93 131 64 8 1180 21 0 0 0 chr9 77988767 77988788 -46087384 + AT_rich Low_complexity Low_complexity 1 21 0 8 1180 831 178 14 0 chr9 77989608 77989754 -46086418 + B1_Mur1 SINE Alu 1 148 -1 8 1180 2238 227 164 55 chr9 77989788 77990494 -46085678 - Lx7 LINE L1 -588 7108 6327 8 1180 830 122 39 92 chr9 77990626 77990779 -46085393 + B1_Mur3 SINE Alu 5 149 0 8 1180 486 279 37 61 chr9 77990880 77991044 -46085128 - RSINE1 SINE B4 0 165 6 8 1180 228 67 0 0 chr9 77992759 77992789 -46083383 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8 1180 207 0 0 0 chr9 77992789 77992812 -46083360 + (ATG)n Simple_repeat Simple_repeat 2 24 0 8 1180 437 291 97 21 chr9 77992854 77992998 -46083174 + RSINE1 SINE B4 11 165 0 8 1180 338 246 62 54 chr9 77994269 77994398 -46081774 - MIR SINE MIR -31 231 102 8 1180 276 292 0 0 chr9 77996778 77996850 -46079322 - ID4_ SINE ID -3 80 9 8 1180 405 0 0 0 chr9 77996896 77996941 -46079231 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1180 1114 68 111 6 chr9 77997116 77997278 -46078894 + B2_Mm2 SINE B2 3 181 -14 8 1180 1196 68 0 0 chr9 77997833 77997981 -46078191 - B1_Mus1 SINE Alu 0 148 1 8 1180 567 211 52 17 chr9 77998553 77998669 -46077503 + B1F2 SINE Alu 4 123 -26 8 1180 753 61 0 0 chr9 77998891 77998990 -46077182 + (TG)n Simple_repeat Simple_repeat 1 99 0 8 1180 694 229 83 0 chr9 77998992 77999149 -46077023 - B3 SINE B2 -46 170 1 8 1180 431 264 52 33 chr9 77999261 77999414 -46076758 + B3A SINE B2 7 162 -36 8 1180 1543 253 37 27 chr9 77999507 77999995 -46076177 + RCHARR1 DNA MER1_type 9 501 -473 8 1180 1203 65 7 0 chr9 78000020 78000174 -46075998 + B2_Mm2 SINE B2 1 155 -40 1 1180 674 243 122 17 chr9 78000174 78000354 -46075818 + ID_B1 SINE B4 12 210 -14 2 1180 1003 111 0 20 chr9 78000355 78000502 -46075670 + B1_Mus2 SINE Alu 3 146 -1 3 1180 1369 67 17 0 chr9 78000495 78000673 -46075499 - B2_Mm2 SINE B2 -14 181 1 4 1180 587 174 142 12 chr9 78000684 78000853 -46075319 + RCHARR1 DNA MER1_type 784 974 0 5 1180 684 268 34 34 chr9 78001005 78001210 -46074962 - B4A SINE B4 -86 206 2 6 1180 1272 122 16 0 chr9 78002057 78002245 -46073927 - B2_Mm2 SINE B2 -3 192 2 7 1180 24 0 0 0 chr9 78002365 78002389 -46073783 + AT_rich Low_complexity Low_complexity 1 24 0 8 1180 210 176 0 0 chr9 78003323 78003374 -46072798 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 9 1180 385 77 29 44 chr9 78003637 78003705 -46072467 + Lx LINE L1 6576 6642 -12 1 1180 411 21 0 0 chr9 78003707 78003755 -46072417 + (GAAAA)n Simple_repeat Simple_repeat 4 51 0 1 1180 273 371 0 9 chr9 78003984 78004090 -46072082 - MIRb SINE MIR -64 204 100 1 1180 409 258 64 64 chr9 78005084 78005225 -46070947 - ID_B1 SINE B4 -8 216 76 1 1180 1185 227 132 3 chr9 78005950 78006277 -46069895 - ORR1D2 LTR MaLR -1 369 1 1 1180 315 329 109 6 chr9 78006328 78006484 -46069688 + MIR SINE MIR 64 235 -27 1 1180 1811 187 130 0 chr9 78006501 78006870 -46069302 + MTD LTR MaLR 2 418 -1 1 1180 199 342 25 50 chr9 78006921 78007041 -46069131 + MIRc SINE MIR 124 240 -28 1 1180 475 238 103 0 chr9 78007165 78007291 -46068881 - B3A SINE B2 -59 139 1 1 1180 547 274 114 61 chr9 78007292 78007537 -46068635 + MTE2a LTR MaLR 79 336 -43 1 1180 224 59 29 0 chr9 78007538 78007572 -46068600 + (GTTTG)n Simple_repeat Simple_repeat 1 35 0 2 1180 822 181 8 0 chr9 78007594 78007727 -46068445 - B1_Mus1 SINE Alu -13 135 2 2 1180 540 77 0 0 chr9 78008030 78008108 -46068064 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1180 197 271 0 20 chr9 78009058 78009107 -46067065 - L2a LINE L2 -4 3422 3375 2 1180 180 0 0 0 chr9 78009123 78009143 -46067029 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1180 213 318 88 29 chr9 78009321 78009525 -46066647 - L2a LINE L2 -263 3163 2948 2 1180 582 252 14 56 chr9 78009576 78009594 -46066578 - B1_Mur2 SINE Alu -1 148 135 2 1180 198 0 0 0 chr9 78009594 78009616 -46066556 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2 1180 582 252 14 56 chr9 78009616 78009740 -46066432 - B1_Mur2 SINE Alu -15 134 12 2 1180 328 274 46 100 chr9 78009630 78009760 -46066412 - ID_B1 SINE B4 -24 200 78 2 1180 192 111 0 0 chr9 78010605 78010641 -46065531 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1180 500 176 10 0 chr9 78010850 78010952 -46065220 - ORR1C1 LTR MaLR -270 108 6 2 1180 1280 20 7 0 chr9 78011470 78011616 -46064556 - B1_Mus2 SINE Alu 0 147 1 3 1180 1138 75 0 0 chr9 78011729 78011876 -46064296 + B1_Mus1 SINE Alu 2 148 0 3 1180 207 0 0 0 chr9 78011980 78012003 -46064169 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3 1180 224 222 22 0 chr9 78012070 78012115 -46064057 + B4 SINE B4 2 47 -245 3 1180 1325 96 0 5 chr9 78013544 78013743 -46062429 - L1_Mus4 LINE L1 -1 6635 6438 3 1180 248 269 0 0 chr9 78014123 78014175 -46061997 + B4 SINE B4 80 131 -161 3 1180 282 146 0 0 chr9 78014135 78014176 -46061996 + B1F1 SINE Alu 7 47 -102 3 1180 755 221 7 7 chr9 78016095 78016250 -46059922 - ID_B1 SINE B4 0 224 70 3 1180 432 225 8 112 chr9 78016860 78016985 -46059187 + B3 SINE B2 102 213 -3 3 1180 826 164 0 0 chr9 78017136 78017264 -46058908 - B1_Mus2 SINE Alu -17 130 3 3 1180 848 190 126 0 chr9 78018749 78018923 -46057249 + B3 SINE B2 2 197 -19 3 1180 1025 52 66 15 chr9 78020058 78020194 -46055978 + B1_Mus2 SINE Alu 5 147 0 4 1180 794 184 17 51 chr9 78020581 78020758 -46055414 - RMER15 LTR ERVL -376 199 29 4 1180 250 197 90 15 chr9 78020762 78020829 -46055343 - RMER15 LTR ERVL -503 72 1 4 1180 255 125 0 0 chr9 78021086 78021126 -46055046 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 4 1180 770 261 33 33 chr9 78021581 78021795 -46054377 + B3 SINE B2 3 216 0 4 1180 23 0 0 0 chr9 78022386 78022409 -46053763 + AT_rich Low_complexity Low_complexity 1 23 0 4 1180 562 229 80 5 chr9 78022409 78022550 -46053622 + B1_Mus1 SINE Alu 1 147 -1 4 1180 230 0 0 32 chr9 78022577 78022601 -46053571 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1180 452 18 18 0 chr9 78022601 78022658 -46053514 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 4 1180 230 0 0 32 chr9 78022658 78022664 -46053508 + (GA)n Simple_repeat Simple_repeat 2 7 0 4 1180 38 22 0 0 chr9 78022804 78022849 -46053323 + AT_rich Low_complexity Low_complexity 1 45 0 4 1180 1069 101 176 26 chr9 78022849 78023042 -46053130 + L1Md_F2 LINE L1 6357 6578 -4 5 1180 21 71 0 0 chr9 78023042 78023084 -46053088 + AT_rich Low_complexity Low_complexity 1 42 0 5 1180 2918 6 3 6 chr9 78023108 78023440 -46052732 - 7SK RNA RNA 0 331 1 5 1180 211 94 91 36 chr9 78024318 78024373 -46051799 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 5 1180 595 263 163 15 chr9 78025103 78025400 -46050772 - L1MD3 LINE L1 -8 7987 7558 5 1180 189 0 0 0 chr9 78025574 78025595 -46050577 + (TTG)n Simple_repeat Simple_repeat 2 22 0 5 1180 388 130 29 0 chr9 78025680 78025749 -46050423 + RMER17B LTR ERVK 888 958 0 5 1180 406 143 0 0 chr9 78026222 78026285 -46049887 - B1_Mus2 SINE Alu 0 147 85 5 1180 830 150 90 62 chr9 78026991 78027169 -46049003 + B2_Mm2 SINE B2 13 195 0 5 1180 548 239 26 0 chr9 78027329 78027442 -46048730 - PB1D9 SINE Alu 0 120 5 5 1180 2609 34 0 280 chr9 78027499 78028038 -46048134 - RLTR10 LTR ERVK -2 388 1 6 1180 17385 18 6 3 chr9 78028038 78029986 -46046186 - RLTR10-int LTR ERVK -1 1986 3 6 1180 2609 34 0 280 chr9 78029990 78030529 -46045643 - RLTR10 LTR ERVK -2 388 1 6 1180 472 187 165 0 chr9 78030529 78030620 -46045552 + PB1D9 SINE Alu 12 117 -3 6 1180 180 0 0 0 chr9 78030621 78030641 -46045531 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1180 233 337 32 43 chr9 78030776 78030869 -46045303 + Cheshire DNA MER1_type 1 92 -2328 6 1180 389 223 105 11 chr9 78030909 78031004 -46045168 - B3 SINE B2 -86 130 27 6 1180 983 230 39 0 chr9 78031163 78031367 -46044805 + B3 SINE B2 2 213 -3 6 1180 602 163 20 0 chr9 78031481 78031579 -46044593 + PB1D9 SINE Alu 4 103 -17 6 1180 189 0 0 0 chr9 78031680 78031701 -46044471 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1180 1880 131 42 101 chr9 78031864 78032288 -46043884 + ORR1A2 LTR MaLR 1 413 -8 6 1180 634 179 14 36 chr9 78032287 78032403 -46043769 + MTC LTR MaLR 96 208 -213 6 1180 988 63 0 0 chr9 78032403 78032529 -46043643 + B1_Mus1 SINE Alu 2 127 -21 7 1180 749 60 0 10 chr9 78032530 78032631 -46043541 + B1_Mm SINE Alu 48 147 0 7 1180 348 127 0 0 chr9 78032631 78032686 -46043486 + (A)n Simple_repeat Simple_repeat 1 55 0 7 1180 542 214 37 194 chr9 78032793 78032984 -46043188 + B3A SINE B2 3 163 -35 7 1180 350 116 14 42 chr9 78033035 78033107 -46043065 - B1_Mm SINE Alu 0 147 78 7 1180 1362 70 21 26 chr9 78033116 78033307 -46042865 - B2_Mm2 SINE B2 -5 190 1 7 1180 418 259 78 14 chr9 78033319 78033502 -46042670 - L1MCa LINE L1 -3967 2435 2247 7 1180 2472 251 97 30 chr9 78033765 78034538 -46041634 - RMER15-int LTR ERVL -5 4994 4170 7 1180 312 51 16 33 chr9 78034608 78034669 -46041503 + (TTTTG)n Simple_repeat Simple_repeat 4 63 0 7 1180 1152 75 7 0 chr9 78034749 78034895 -46041277 - B1_Mus2 SINE Alu 0 147 1 7 1180 612 0 0 0 chr9 78035033 78035101 -46041071 + (TC)n Simple_repeat Simple_repeat 1 68 0 8 1180 1060 194 29 10 chr9 78035101 78035309 -46040863 + B3 SINE B2 3 214 -2 8 1180 1837 286 57 27 chr9 78035490 78036118 -46040054 - RMER15-int LTR ERVL -3088 1911 1265 7 1180 733 294 78 7 chr9 78036117 78036411 -46039761 - RMER15-int LTR ERVL -4157 842 528 7 1180 1019 58 250 0 chr9 78037126 78037282 -46038890 - B2_Mm2 SINE B2 0 195 1 8 1180 800 155 7 21 chr9 78037587 78037732 -46038440 - B1_Mur3 SINE Alu -2 147 5 8 1180 261 317 24 0 chr9 78037745 78037827 -46038345 - RMER15-int LTR ERVL -4911 88 5 7 1180 660 306 70 37 chr9 78037840 78038139 -46038033 - RMER15 LTR ERVL -17 558 250 7 1180 232 284 38 63 chr9 78038266 78038345 -46037827 + RLTR25A LTR ERVK 496 572 -531 8 1180 540 149 118 10 chr9 78038279 78038381 -46037791 + B1_Mur3 SINE Alu 24 136 -13 8 1180 1065 152 5 53 chr9 78038935 78039123 -46037049 + RLTR24 LTR ERV1 1 179 -350 8 1180 272 267 68 19 chr9 78039326 78039429 -46036743 + MLT1A1 LTR MaLR 296 403 -5 8 1180 204 182 0 0 chr9 78039871 78039915 -46036257 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1180 207 0 0 0 chr9 78040327 78040350 -46035822 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1180 846 0 0 0 chr9 78040861 78040955 -46035217 + (TG)n Simple_repeat Simple_repeat 2 95 0 9 1180 313 309 52 32 chr9 78041343 78041497 -46034675 + LTRIS2 LTR ERV1 355 511 -53 9 1180 1916 151 66 11 chr9 78041535 78041884 -46034288 - Lx2A1 LINE L1 -2 7006 6639 9 1180 421 200 52 10 chr9 78041886 78041982 -46034190 + B2_Mm2 SINE B2 70 169 -26 9 1180 301 105 0 0 chr9 78041985 78042023 -46034149 + Lx2A LINE L1 6214 6251 -757 9 1180 242 218 18 0 chr9 78042084 78042139 -46034033 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1180 687 232 108 21 chr9 78042811 78043005 -46033167 - B3 SINE B2 -4 212 2 9 1180 411 202 0 154 chr9 78043880 78043943 -46032229 + MTD LTR MaLR 21 78 -341 9 1180 1298 95 10 31 chr9 78043943 78044139 -46032033 + B2_Mm1t SINE B2 1 192 -1 9 1180 411 202 0 154 chr9 78044139 78044192 -46031980 + MTD LTR MaLR 79 119 -300 9 1180 701 235 0 13 chr9 78044246 78044397 -46031775 - B1_Mur3 SINE Alu 0 149 1 9 1180 276 200 105 13 chr9 78044397 78044473 -46031699 + MTD LTR MaLR 108 190 -229 9 1180 250 209 41 82 chr9 78044530 78044586 -46031586 + MTD LTR MaLR 183 236 -185 9 1180 399 113 0 0 chr9 78044586 78044648 -46031524 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1180 250 209 41 82 chr9 78044648 78044664 -46031508 + MTD LTR MaLR 237 252 -169 9 1180 941 102 51 0 chr9 78045135 78045272 -46030900 - B1_Mur4 SINE Alu 0 150 7 1 1180 342 203 55 164 chr9 78045169 78045334 -46030838 - MT2B LTR ERVL -337 264 118 1 1180 823 152 58 0 chr9 78045659 78045797 -46030375 - B1_Mur4 SINE Alu 0 150 5 1 1180 254 191 0 0 chr9 78047073 78047120 -46029052 - RMER30 DNA MER1_type -154 48 2 1 1180 3420 285 77 100 chr9 78047642 78049517 -46026655 - Lx8 LINE L1 -3 7470 5639 1 1180 365 225 0 14 chr9 78049520 78049592 -46026580 - PB1D10 SINE Alu -12 105 35 1 1180 205 366 29 29 chr9 78050241 78050345 -46025827 + MIR3 SINE MIR 82 185 -23 1 1180 676 226 15 0 chr9 78050763 78050896 -46025276 + B1_Mur3 SINE Alu 5 139 -10 1 1180 234 245 0 19 chr9 78050896 78050950 -46025222 + GA-rich Low_complexity Low_complexity 2 54 0 1 1180 201 320 123 63 chr9 78051281 78051489 -46024683 - MIRb SINE MIR 0 262 47 1 1180 408 88 0 0 chr9 78051691 78051748 -46024424 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1180 183 184 0 0 chr9 78051750 78051788 -46024384 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 1180 188 111 28 0 chr9 78053015 78053051 -46023121 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1180 1009 75 0 43 chr9 78053340 78053480 -46022692 - B1_Mur4 SINE Alu -13 137 4 1 1180 519 369 0 0 chr9 78053929 78054078 -46022094 + RSINE1 SINE B4 15 163 -2 1 1180 317 160 0 0 chr9 78054149 78054199 -46021973 + ORR1C2 LTR MaLR 1 50 -334 1 1180 1934 185 19 24 chr9 78054223 78054599 -46021573 - ORR1D1 LTR MaLR 0 374 1 1 1180 607 234 40 40 chr9 78054919 78055070 -46021102 - B3 SINE B2 0 216 66 1 1180 405 0 0 0 chr9 78055468 78055513 -46020659 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1180 213 290 32 16 chr9 78055971 78056034 -46020138 + ID4_ SINE ID 4 67 -16 1 1180 1132 245 83 65 chr9 78056318 78056776 -46019396 + Lx7 LINE L1 7213 7678 -18 1 1180 252 86 0 0 chr9 78057253 78057288 -46018884 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1180 254 305 17 0 chr9 78057888 78057947 -46018225 - RSINE1 SINE B4 -8 157 98 1 1180 1454 126 161 45 chr9 78058661 78058909 -46017263 - MTC LTR MaLR -28 393 105 1 1180 910 131 73 0 chr9 78058909 78059046 -46017126 + B1_Mm SINE Alu 1 147 0 1 1180 1454 126 161 45 chr9 78059046 78059089 -46017083 - MTC LTR MaLR -317 104 68 1 1180 4552 146 39 3 chr9 78059091 78059817 -46016355 - Lx LINE L1 0 6654 5903 1 1180 1083 72 0 0 chr9 78059817 78059955 -46016217 + B2_Mm2 SINE B2 2 139 -56 1 1180 340 176 95 0 chr9 78059947 78060021 -46016151 - MTC LTR MaLR -340 81 1 1 1180 249 301 0 35 chr9 78060888 78060974 -46015198 - ID4_ SINE ID 0 83 1 1 1180 746 50 10 0 chr9 78061001 78061100 -46015072 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 1 1180 1218 48 0 7 chr9 78062771 78062918 -46013254 + B1_Mus2 SINE Alu 2 147 0 1 1180 207 0 0 0 chr9 78062948 78062971 -46013201 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1180 2232 174 0 21 chr9 78063312 78063694 -46012478 - ORR1D1 LTR MaLR 0 374 1 1 1180 1784 323 53 17 chr9 78063695 78064357 -46011815 - Lx8 LINE L1 -207 7266 6581 1 1180 449 289 27 53 chr9 78065439 78065589 -46010583 + RSINE1 SINE B4 19 164 -1 1 1180 250 263 0 0 chr9 78065637 78065694 -46010478 + B4A SINE B4 230 286 -6 1 1180 304 98 0 0 chr9 78065770 78065811 -46010361 + HAL1-3A_ME LINE L1 1977 2017 -841 1 1180 351 339 65 39 chr9 78065813 78066043 -46010129 + L1MEg LINE L1 1232 1467 -4617 1 1180 207 100 0 0 chr9 78066833 78066863 -46009309 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 1 1180 529 309 15 0 chr9 78066937 78067073 -46009099 + RSINE1 SINE B4 22 159 -6 1 1180 656 328 55 59 chr9 78067157 78067951 -46008221 + L1M2 LINE L1 1797 2603 -3946 1 1180 337 270 0 10 chr9 78069273 78069374 -46006798 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1180 184 323 106 57 chr9 78069637 78069778 -46006394 + MIRc SINE MIR 8 155 -113 1 1180 878 164 15 23 chr9 78069778 78069965 -46006207 + B3 SINE B2 2 183 -12 1 1180 817 182 36 14 chr9 78070134 78070273 -46005899 + B1_Mur2 SINE Alu 7 148 -1 1 1180 798 11 0 0 chr9 78070274 78070365 -46005807 + (GA)n Simple_repeat Simple_repeat 1 91 0 1 1180 246 136 10 0 chr9 78070980 78071023 -46005149 + B1_Mur2 SINE Alu 97 142 -7 1 1180 234 273 194 15 chr9 78071785 78071852 -46004320 - ID2 SINE ID -3 80 2 1 1180 624 27 0 0 chr9 78071878 78071952 -46004220 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1180 438 297 85 0 chr9 78071970 78072088 -46004084 - B3A SINE B2 -70 128 1 1 1180 471 306 50 0 chr9 78072107 78072228 -46003944 - B1F1 SINE Alu -13 136 10 1 1180 326 272 107 0 chr9 78072235 78072338 -46003834 - PB1 SINE Alu -2 125 12 1 1180 23 0 0 0 chr9 78072462 78072485 -46003687 + AT_rich Low_complexity Low_complexity 1 23 0 1 1180 24 53 0 0 chr9 78072596 78072634 -46003538 + AT_rich Low_complexity Low_complexity 1 38 0 1 1180 188 344 31 0 chr9 78073058 78073122 -46003050 - MIR SINE MIR -74 188 123 1 1180 647 128 10 0 chr9 78073915 78074017 -46002155 - B1_Mur4 SINE Alu -5 145 43 1 1180 1076 39 0 0 chr9 78074068 78074198 -46001974 - B2_Mm1t SINE B2 -63 130 1 1 1180 1105 98 92 0 chr9 78074521 78074684 -46001488 + B2_Mm1t SINE B2 2 179 -14 1 1180 329 156 20 34 chr9 78074696 78074770 -46001402 + B2_Mm2 SINE B2 46 123 -75 1 1180 207 0 0 0 chr9 78074778 78074801 -46001371 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1180 359 330 117 52 chr9 78074849 78075233 -46000939 + L1MC4a LINE L1 6226 6634 -1248 1 1180 1569 217 38 35 chr9 78075244 78075617 -46000555 - ORR1D1 LTR MaLR 0 374 1 1 1180 369 0 0 0 chr9 78075786 78075827 -46000345 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1180 295 208 258 38 chr9 78075984 78076171 -46000001 + L1MC4a LINE L1 6610 6835 -1047 1 1180 311 308 139 7 chr9 78078830 78078974 -45997198 - HAL1-3A_ME LINE L1 -419 2439 2277 1 1180 989 73 65 7 chr9 78079155 78079293 -45996879 + B1_Mus1 SINE Alu 2 147 -1 1 1180 279 79 0 0 chr9 78079293 78079331 -45996841 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 1 1180 278 222 0 0 chr9 78080711 78080765 -45995407 + B3A SINE B2 1 54 -144 1 1180 267 54 0 0 chr9 78080858 78080895 -45995277 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1180 412 327 30 83 chr9 78082248 78082477 -45993695 + B3A SINE B2 1 216 0 1 1180 668 195 0 51 chr9 78085032 78085189 -45990983 + B1_Mur4 SINE Alu 2 150 0 1 1180 1625 145 59 11 chr9 78085197 78085483 -45990689 - ORR1A2 LTR MaLR -27 300 1 1 1180 6888 115 45 6 chr9 78085499 78086588 -45989584 - ORR1A2-int LTR MaLR -30 1933 802 1 1180 219 69 0 0 chr9 78086857 78086886 -45989286 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 1 1180 250 197 0 62 chr9 78087032 78087113 -45989059 + Lx6 LINE L1 7375 7450 -10 1 1180 495 252 72 0 chr9 78088296 78088407 -45987765 - PB1D9 SINE Alu -1 119 1 1 1180 676 299 32 59 chr9 78090869 78091030 -45985142 + B3 SINE B2 1 162 -54 1 1180 369 0 0 0 chr9 78091030 78091071 -45985101 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1180 676 299 32 59 chr9 78091071 78091129 -45985043 + B3 SINE B2 163 214 -2 1 1180 689 264 7 26 chr9 78091197 78091338 -45984834 + B1_Mur2 SINE Alu 1 138 -11 1 1180 573 42 0 0 chr9 78091338 78091410 -45984762 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 1 1180 1669 207 72 54 chr9 78091698 78091968 -45984204 + RLTR18B LTR ERVK 5 287 -225 1 1180 1264 53 22 161 chr9 78091968 78092191 -45983981 - B2_Mm2 SINE B2 -3 192 1 1 1180 1669 207 72 54 chr9 78092191 78092309 -45983863 + RLTR18B LTR ERVK 288 400 -112 1 1180 450 340 34 7 chr9 78092512 78092660 -45983512 + RSINE1 SINE B4 10 161 -4 1 1180 486 311 132 25 chr9 78092691 78093047 -45983125 + L1MA7 LINE L1 5502 5895 -396 1 1180 402 251 0 0 chr9 78093086 78093249 -45982923 + (TG)n Simple_repeat Simple_repeat 1 163 0 1 1180 180 239 43 0 chr9 78094683 78094729 -45981443 + MIR SINE MIR 73 120 -142 1 1180 460 204 43 0 chr9 78094744 78094837 -45981335 + B1F2 SINE Alu 48 144 -5 1 1180 286 29 0 0 chr9 78095078 78095112 -45981060 - RLTR1B LTR ERV1 0 512 479 1 1180 983 193 167 47 chr9 78095118 78095477 -45980695 + RLTR9E LTR ERVK 6 407 -2 1 1180 1943 60 62 85 chr9 78095477 78095779 -45980393 - RLTR1B LTR ERV1 -32 480 186 1 1180 4521 34 2 0 chr9 78095784 78096311 -45979861 - L1Md_F3 LINE L1 -14 6570 6043 1 1180 323 0 0 0 chr9 78096311 78096348 -45979824 - tRNA-Arg-AGA tRNA tRNA -39 37 1 1 1180 693 0 0 0 chr9 78096501 78096580 -45979592 - RLTR1B-int LTR ERV1 0 3299 3221 1 1180 192 152 0 0 chr9 78096583 78096616 -45979556 + T-rich Low_complexity Low_complexity 1 33 0 1 1180 1088 77 21 0 chr9 78096616 78096759 -45979413 - B1_Mus2 SINE Alu 0 147 2 1 1180 2226 35 0 0 chr9 78096771 78097026 -45979146 - RLTR1B-int LTR ERV1 -94 3205 2951 1 1180 966 104 7 0 chr9 78097026 78097161 -45979011 - B2_Mm1t SINE B2 -57 136 1 1 1180 512 95 12 0 chr9 78097236 78097320 -45978852 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1180 2461 112 141 30 chr9 78097517 78097951 -45978221 - RLTR45 LTR ERVK 0 482 1 1 1180 7945 96 2 3 chr9 78097951 78099094 -45977078 - RLTR45-int LTR ERVK -413 7804 6331 1 1180 804 77 17 17 chr9 78099832 78099951 -45976221 - RLTR45-int LTR ERVK -6213 1031 913 1 1180 1814 59 0 0 chr9 78100069 78100288 -45975884 - RLTR45-int LTR ERVK -6334 910 692 1 1180 1152 35 0 40 chr9 78100642 78100792 -45975380 - RLTR45-int LTR ERVK -6552 692 549 1 1180 3663 119 34 5 chr9 78101547 78102102 -45974070 - RLTR45-int LTR ERVK -6673 571 1 1 1180 2717 129 37 51 chr9 78102102 78102591 -45973581 - RLTR45 LTR ERVK 0 482 1 1 1180 311 308 139 7 chr9 78105303 78105447 -45970725 - HAL1-3A_ME LINE L1 -419 2439 2277 1 1180 989 73 65 7 chr9 78105628 78105766 -45970406 + B1_Mus1 SINE Alu 2 147 -1 1 1180 279 79 0 0 chr9 78105766 78105804 -45970368 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 1 1180 278 222 0 0 chr9 78107183 78107237 -45968935 + B3A SINE B2 1 54 -144 1 1180 267 54 0 0 chr9 78107330 78107367 -45968805 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1180 412 326 30 83 chr9 78108720 78108949 -45967223 + B3A SINE B2 1 216 0 2 1180 411 326 156 16 chr9 78110939 78111254 -45964918 + L1MB7 LINE L1 5577 5935 -249 2 1180 747 168 0 51 chr9 78111515 78111672 -45964500 + B1_Mur4 SINE Alu 2 150 0 2 1180 1637 145 59 11 chr9 78111680 78111966 -45964206 - ORR1A2 LTR MaLR -27 300 1 2 1180 6884 118 44 6 chr9 78111982 78113072 -45963100 - ORR1A2-int LTR MaLR -30 1933 802 2 1180 219 69 0 0 chr9 78113341 78113370 -45962802 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 2 1180 305 145 0 62 chr9 78113515 78113596 -45962576 + Lx6 LINE L1 7375 7450 -10 2 1180 495 252 72 0 chr9 78114779 78114890 -45961282 - PB1D9 SINE Alu -1 119 1 2 1180 676 299 32 59 chr9 78117352 78117513 -45958659 + B3 SINE B2 1 162 -54 2 1180 369 0 0 0 chr9 78117513 78117554 -45958618 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1180 676 299 32 59 chr9 78117554 78117612 -45958560 + B3 SINE B2 163 214 -2 2 1180 682 257 6 51 chr9 78117680 78117829 -45958343 + B1_Mur2 SINE Alu 1 144 -5 2 1180 285 29 0 0 chr9 78117829 78117863 -45958309 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 2 1180 1647 209 72 54 chr9 78118151 78118421 -45957751 + RLTR18B LTR ERVK 5 287 -225 2 1180 1262 58 22 160 chr9 78118421 78118646 -45957526 - B2_Mm2 SINE B2 -1 194 1 2 1180 1647 209 72 54 chr9 78118646 78118764 -45957408 + RLTR18B LTR ERVK 288 400 -112 2 1181 433 343 62 7 chr9 78118969 78119113 -45957059 + RSINE1 SINE B4 10 161 -4 2 1181 447 293 89 28 chr9 78119122 78119497 -45956675 + Lx8 LINE L1 5446 5860 -1613 2 1181 396 250 0 0 chr9 78119537 78119697 -45956475 + (TG)n Simple_repeat Simple_repeat 1 160 0 2 1181 180 239 43 0 chr9 78121129 78121175 -45954997 + MIR SINE MIR 73 120 -142 2 1181 460 204 43 0 chr9 78121190 78121283 -45954889 + B1F2 SINE Alu 48 144 -5 2 1181 286 29 0 0 chr9 78121524 78121558 -45954614 - RLTR1B LTR ERV1 0 512 479 2 1181 977 199 167 47 chr9 78121563 78121922 -45954250 + RLTR9E LTR ERVK 6 407 -2 2 1181 1989 150 76 104 chr9 78121922 78122225 -45953947 - RLTR1B LTR ERV1 -32 480 186 2 1181 4490 38 4 0 chr9 78122225 78122754 -45953418 - L1Md_F3 LINE L1 -11 6573 6043 2 1181 1989 150 76 104 chr9 78122754 78122944 -45953228 - RLTR1B LTR ERV1 -327 185 1 2 1181 693 0 0 0 chr9 78122944 78123023 -45953149 - RLTR1B-int LTR ERV1 0 3299 3221 2 1181 216 97 0 0 chr9 78123024 78123055 -45953117 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1181 1169 49 21 0 chr9 78123055 78123198 -45952974 - B1_Mus2 SINE Alu 0 147 2 2 1181 2226 35 0 0 chr9 78123210 78123465 -45952707 - RLTR1B-int LTR ERV1 -94 3205 2951 2 1181 966 104 7 0 chr9 78123465 78123600 -45952572 - B2_Mm1t SINE B2 -57 136 1 2 1181 249 145 62 31 chr9 78123675 78123739 -45952433 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 2 1181 2291 121 160 28 chr9 78123920 78124346 -45951826 - RLTR45 LTR ERVK 0 482 1 2 1181 7946 93 3 4 chr9 78124346 78125490 -45950682 - RLTR45-int LTR ERVK -413 7804 6331 2 1181 804 77 17 17 chr9 78126228 78126347 -45949825 - RLTR45-int LTR ERVK -6213 1031 913 2 1181 1814 59 0 0 chr9 78126465 78126684 -45949488 - RLTR45-int LTR ERVK -6334 910 692 2 1181 1152 35 0 40 chr9 78127038 78127188 -45948984 - RLTR45-int LTR ERVK -6552 692 549 2 1181 3700 116 34 5 chr9 78127943 78128498 -45947674 - RLTR45-int LTR ERVK -6673 571 1 2 1181 2717 129 37 51 chr9 78128498 78128987 -45947185 - RLTR45 LTR ERVK 0 482 1 2 1181 4469 16 2 0 chr9 78130571 78131063 -45945109 - MT2_Mm LTR ERVL 0 493 1 2 1181 319 0 0 0 chr9 78131063 78131101 -45945071 - MERVL-int LTR ERVL 0 5485 5448 2 1181 403 167 46 35 chr9 78131101 78131188 -45944984 - ORR1A3-int LTR MaLR -1323 640 553 2 1181 41466 16 14 0 chr9 78131188 78136475 -45939697 - MERVL-int LTR ERVL -125 5360 1 2 1181 4443 18 2 0 chr9 78136475 78136967 -45939205 - MT2_Mm LTR ERVL 0 493 1 2 1181 300 307 148 14 chr9 78138105 78138247 -45937925 - HAL1-3A_ME LINE L1 -421 2437 2277 2 1181 8510 15 0 1 chr9 78138428 78139377 -45936795 + L1Md_A LINE L1 5635 6582 0 2 1181 252 0 0 0 chr9 78140678 78140706 -45935466 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1181 1233 61 0 0 chr9 78140706 78140854 -45935318 - B1_Mus1 SINE Alu 0 148 1 2 1181 1291 99 10 10 chr9 78141457 78141650 -45934522 - B2_Mm2 SINE B2 0 195 3 2 1181 1616 62 38 0 chr9 78141796 78142007 -45934165 - MTB LTR MaLR 0 400 182 2 1181 300 277 143 0 chr9 78142007 78142126 -45934046 - L1MEg LINE L1 -4145 1939 1804 2 1181 384 71 0 0 chr9 78142126 78142182 -45933990 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 2 1181 704 76 0 0 chr9 78142201 78142293 -45933879 - B1_Mus2 SINE Alu -9 138 47 2 1181 1295 67 44 0 chr9 78142289 78142469 -45933703 - MTB LTR MaLR -212 188 1 2 1181 404 274 168 62 chr9 78143305 78143445 -45932727 + B3A SINE B2 1 170 -28 2 1181 303 49 0 0 chr9 78143445 78143486 -45932686 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1181 404 274 168 62 chr9 78143486 78143524 -45932648 + B3A SINE B2 171 198 0 2 1181 325 29 56 42 chr9 78143559 78143631 -45932541 + (TTTTTG)n Simple_repeat Simple_repeat 6 78 0 2 1181 1179 55 14 0 chr9 78143631 78143776 -45932396 - B1_Mus2 SINE Alu 0 147 1 2 1181 1096 71 0 0 chr9 78145101 78145241 -45930931 - B1_Mm SINE Alu -1 146 7 2 1181 490 240 20 134 chr9 78145135 78145337 -45930835 - MT2B LTR ERVL -337 264 86 2 1181 385 250 97 53 chr9 78145248 78145362 -45930810 + B3A SINE B2 28 146 -52 2 1181 459 48 0 0 chr9 78145400 78145462 -45930710 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1181 343 332 133 19 chr9 78147508 78147778 -45928394 + L1MB7 LINE L1 5616 5916 -268 2 1181 216 152 0 80 chr9 78148038 78148058 -45928114 + (CAAA)n Simple_repeat Simple_repeat 3 21 0 2 1181 722 162 7 45 chr9 78148058 78148213 -45927959 + B1_Mur4 SINE Alu 2 150 0 2 1181 216 152 0 80 chr9 78148213 78148242 -45927930 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1181 1725 126 59 4 chr9 78148259 78148531 -45927641 - ORR1A2 LTR MaLR -40 287 1 2 1181 5482 128 116 61 chr9 78148531 78149394 -45926778 - ORR1A2-int LTR MaLR 0 1963 1043 2 1181 1353 78 17 6 chr9 78149394 78149575 -45926597 - B2_Mm2 SINE B2 -11 184 2 2 1181 5482 128 116 61 chr9 78149575 78149812 -45926360 - ORR1A2-int LTR MaLR -921 1042 802 2 1181 277 123 25 88 chr9 78150234 78150314 -45925858 + Lx6 LINE L1 7376 7450 -10 2 1181 1158 109 0 0 chr9 78153455 78153686 -45922486 + (CA)n Simple_repeat Simple_repeat 1 231 0 2 1181 409 333 38 38 chr9 78153928 78154104 -45922068 + B3 SINE B2 5 180 -36 2 1181 393 75 0 0 chr9 78154104 78154157 -45922015 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1181 409 333 38 38 chr9 78154157 78154192 -45921980 + B3 SINE B2 181 216 0 2 1181 672 222 0 53 chr9 78154298 78154431 -45921741 + B1_Mur2 SINE Alu 15 140 -9 2 1181 209 189 0 0 chr9 78154433 78154470 -45921702 + A-rich Low_complexity Low_complexity 4 40 0 2 1181 1187 54 0 13 chr9 78154574 78154588 -45921584 - B1_Mus2 SINE Alu 0 147 135 2 1181 396 0 0 0 chr9 78154588 78154632 -45921540 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 1181 1187 54 0 13 chr9 78154632 78154766 -45921406 - B1_Mus2 SINE Alu -13 134 1 2 1181 981 225 156 0 chr9 78154973 78155217 -45920955 + RLTR18B LTR ERVK 5 286 -226 2 1181 1114 58 0 0 chr9 78155244 78155382 -45920790 - B1_Mm SINE Alu 0 147 10 2 1181 235 293 6 87 chr9 78155284 78155398 -45920774 - ORR1B1-int LTR MaLR -755 754 653 2 1181 1308 89 25 40 chr9 78155398 78155596 -45920576 - B2_Mm2 SINE B2 0 195 1 2 1181 235 293 6 87 chr9 78155596 78155642 -45920530 - ORR1B1-int LTR MaLR -857 652 607 2 1181 799 75 19 0 chr9 78155638 78155745 -45920427 - B1_Mm SINE Alu 0 147 39 2 1181 747 134 0 0 chr9 78155749 78155861 -45920311 + RLTR18B LTR ERVK 290 401 -111 2 1181 281 217 50 42 chr9 78155898 78156018 -45920154 + Lx9 LINE L1 7514 7634 -10 2 1181 535 324 35 0 chr9 78156062 78156207 -45919965 + RSINE1 SINE B4 12 161 -4 2 1181 459 301 119 34 chr9 78156240 78156594 -45919578 + L1_Rod LINE L1 5444 5827 -20 2 1181 443 237 6 0 chr9 78156657 78156834 -45919338 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1181 225 0 0 0 chr9 78156907 78156932 -45919240 + (TAATG)n Simple_repeat Simple_repeat 4 28 0 2 1181 377 207 8 67 chr9 78157403 78157494 -45918678 - Lx9 LINE L1 0 7644 7557 2 1181 1308 98 5 35 chr9 78157494 78157695 -45918477 - B2_Mm2 SINE B2 0 195 1 2 1181 377 207 8 67 chr9 78157695 78157722 -45918450 - Lx9 LINE L1 -88 7556 7533 2 1181 332 300 0 39 chr9 78157795 78157899 -45918273 - PB1D10 SINE Alu 0 117 18 2 1181 331 296 71 114 chr9 78157984 78158015 -45918157 + B4A SINE B4 78 157 -135 2 1181 816 148 0 0 chr9 78158015 78158150 -45918022 + B1_Mus2 SINE Alu 12 146 -1 2 1181 331 296 71 114 chr9 78158150 78158194 -45917978 + B4A SINE B4 158 278 -14 2 1181 1086 111 0 0 chr9 78158283 78158650 -45917522 + (TG)n Simple_repeat Simple_repeat 1 367 0 2 1181 348 24 0 0 chr9 78158650 78158690 -45917482 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1181 200 59 0 29 chr9 78159043 78159078 -45917094 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 1181 1375 78 10 16 chr9 78159499 78159693 -45916479 + B2_Mm1a SINE B2 1 193 0 2 1181 469 302 25 25 chr9 78160168 78160331 -45915841 - MER5A DNA MER1_type -1 188 26 2 1181 180 0 0 0 chr9 78160907 78160927 -45915245 + (CAG)n Simple_repeat Simple_repeat 1 20 0 2 1181 193 213 85 0 chr9 78162387 78162434 -45913738 + MIRc SINE MIR 51 101 -167 2 1181 384 22 0 0 chr9 78162691 78162736 -45913436 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1181 591 260 127 0 chr9 78162755 78162928 -45913244 + MTD LTR MaLR 225 419 0 2 1181 225 233 0 0 chr9 78164272 78164315 -45911857 - ZP3AR Satellite Satellite -77 135 93 2 1181 1850 160 25 6 chr9 78164349 78164664 -45911508 + ORR1A4 LTR MaLR 1 321 -8 2 1181 285 51 0 0 chr9 78164724 78164763 -45911409 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1181 1795 251 19 55 chr9 78164771 78165146 -45911026 - MT2A LTR ERVL -74 459 88 2 1181 896 219 44 15 chr9 78165146 78165350 -45910822 + B3 SINE B2 1 210 -6 2 1181 1795 251 19 55 chr9 78165350 78165446 -45910726 - MT2A LTR ERVL -446 87 5 2 1181 324 0 0 0 chr9 78165739 78165775 -45910397 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2 1181 1291 27 0 0 chr9 78166377 78166524 -45909648 - B1_Mus2 SINE Alu 0 147 1 2 1181 279 216 92 33 chr9 78166555 78166675 -45909497 - Lx8 LINE L1 -3 7470 7344 2 1181 2407 221 36 36 chr9 78166694 78167445 -45908727 - L1_Rod LINE L1 -3914 1933 1182 2 1181 929 104 21 0 chr9 78167470 78167627 -45908545 - B2_Mm2 SINE B2 -42 174 2 2 1181 674 269 40 24 chr9 78167654 78167902 -45908270 - L1_Rod LINE L1 -6457 1151 900 2 1181 22 0 0 0 chr9 78170393 78170415 -45905757 + AT_rich Low_complexity Low_complexity 1 22 0 2 1181 252 0 0 0 chr9 78170597 78170625 -45905547 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2 1181 1747 244 18 86 chr9 78170919 78171015 -45905157 + MT2A LTR ERVL 5 87 -446 2 1181 875 224 44 15 chr9 78171015 78171219 -45904953 - B3 SINE B2 -6 210 1 3 1181 1747 244 18 86 chr9 78171219 78171420 -45904752 + MT2A LTR ERVL 88 274 -259 2 1181 1460 68 5 0 chr9 78171420 78171610 -45904562 + B2_Mm1t SINE B2 1 191 -2 3 1181 1747 244 18 86 chr9 78171610 78171799 -45904373 + MT2A LTR ERVL 275 459 -74 2 1181 321 47 0 0 chr9 78171807 78171850 -45904322 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1181 213 39 0 0 chr9 78171852 78171878 -45904294 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 3 1181 1262 142 37 0 chr9 78171924 78172144 -45904028 - ORR1A4 LTR MaLR 0 378 121 3 1181 1778 133 43 67 chr9 78172191 78172246 -45903926 - ORR1A4 LTR MaLR -8 321 274 3 1181 1444 38 38 5 chr9 78172246 78172431 -45903741 - B2_Mm2 SINE B2 0 195 5 3 1181 1778 133 43 67 chr9 78172431 78172704 -45903468 - ORR1A4 LTR MaLR -56 273 1 3 1181 4708 15 0 0 chr9 78173480 78174004 -45902168 + L1Md_A LINE L1 6057 6580 -2 3 1181 420 268 141 8 chr9 78174345 78174473 -45901699 - MTD LTR MaLR -50 369 225 3 1181 320 0 25 0 chr9 78174477 78174517 -45901655 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1181 469 302 25 25 chr9 78176883 78177046 -45899126 + MER5A DNA MER1_type 26 188 -1 3 1181 267 41 20 39 chr9 78177917 78177968 -45898204 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 3 1181 225 0 0 0 chr9 78178152 78178177 -45897995 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 3 1181 894 216 122 5 chr9 78178364 78178569 -45897603 + RMER1B Other Other 20 248 -818 3 1181 933 90 0 0 chr9 78178569 78178702 -45897470 + (TG)n Simple_repeat Simple_repeat 2 134 0 3 1181 189 0 0 0 chr9 78181969 78181990 -45894182 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 3 1181 6744 118 52 20 chr9 78182378 78182615 -45893557 + ORR1A2-int LTR MaLR 802 1034 -929 3 1181 1612 42 0 20 chr9 78182615 78182811 -45893361 + B2_Mm1a SINE B2 2 193 0 3 1181 6744 118 52 20 chr9 78182811 78183698 -45892474 + ORR1A2-int LTR MaLR 1035 1963 0 3 1181 1691 118 61 4 chr9 78183698 78183962 -45892210 + ORR1A2 LTR MaLR 1 279 -48 3 1181 220 105 17 34 chr9 78183966 78184025 -45892147 + T-rich Low_complexity Low_complexity 1 58 0 3 1181 652 171 7 45 chr9 78184026 78184175 -45891997 - B1_Mur4 SINE Alu -1 149 8 3 1181 310 365 128 6 chr9 78184440 78184760 -45891412 - L1MB7 LINE L1 -249 5935 5577 3 1181 1210 55 7 0 chr9 78185947 78186093 -45890079 + B1_Mm SINE Alu 1 147 0 3 1181 234 62 0 0 chr9 78186954 78186986 -45889186 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1181 962 97 0 0 chr9 78187034 78187168 -45889004 + B1_Mm SINE Alu 1 134 -13 3 1181 183 42 0 0 chr9 78187168 78187192 -45888980 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1181 435 261 72 36 chr9 78187195 78187334 -45888838 - B3A SINE B2 -52 146 3 3 1181 1235 48 0 0 chr9 78188639 78188786 -45887386 + B1_Mus2 SINE Alu 1 147 0 3 1181 261 0 0 0 chr9 78188855 78188884 -45887288 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1181 277 241 0 0 chr9 78188975 78189029 -45887143 - B3A SINE B2 -144 54 1 3 1181 1318 69 42 5 chr9 78189865 78190054 -45886118 + MTB LTR MaLR 1 196 -204 3 1181 752 79 0 0 chr9 78190041 78190142 -45886030 + B1_Mus2 SINE Alu 47 147 0 3 1181 294 78 61 30 chr9 78190142 78190208 -45885964 + A-rich Low_complexity Low_complexity 3 70 0 3 1181 1455 77 58 5 chr9 78190208 78190416 -45885756 + MTB LTR MaLR 182 400 0 3 1181 1273 105 10 10 chr9 78190562 78190755 -45885417 + B2_Mm2 SINE B2 3 195 0 3 1181 258 127 12 37 chr9 78191307 78191389 -45884783 + T-rich Low_complexity Low_complexity 3 82 0 3 1181 1149 68 0 0 chr9 78191392 78191539 -45884633 - B1_Mus2 SINE Alu 0 147 1 3 1181 468 62 0 0 chr9 78191550 78191614 -45884558 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1181 668 302 32 37 chr9 78191614 78191794 -45884378 - B3A SINE B2 -17 181 2 3 1181 320 315 141 38 chr9 78191960 78192145 -45884027 - MER20 DNA MER1_type -15 204 1 3 1181 638 285 25 12 chr9 78192381 78192541 -45883631 - RSINE1 SINE B4 0 165 4 3 1181 1195 61 7 0 chr9 78192573 78192720 -45883452 + B1_Mus1 SINE Alu 1 148 0 3 1181 186 209 0 0 chr9 78194492 78194535 -45881637 + GA-rich Low_complexity Low_complexity 3 45 0 3 1181 197 100 0 48 chr9 78194581 78194623 -45881549 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 3 1181 1457 17 6 0 chr9 78195215 78195391 -45880781 + (TTCTCC)n Simple_repeat Simple_repeat 4 180 0 3 1181 926 125 23 0 chr9 78195394 78195570 -45880602 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1181 252 0 0 0 chr9 78195598 78195626 -45880546 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1181 221 293 0 0 chr9 78196837 78196895 -45879277 + CT-rich Low_complexity Low_complexity 2 59 0 3 1181 923 43 0 0 chr9 78196953 78197069 -45879103 + B1_Mus2 SINE Alu 32 147 0 3 1181 1257 34 0 0 chr9 78197595 78197741 -45878431 - B1_Mus2 SINE Alu 0 147 2 3 1181 21 0 0 0 chr9 78198293 78198314 -45877858 + AT_rich Low_complexity Low_complexity 1 21 0 3 1181 1715 16 0 20 chr9 78198318 78198515 -45877657 - B2_Mm1a SINE B2 0 193 1 3 1181 220 111 44 0 chr9 78198721 78198766 -45877406 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1181 1375 80 10 21 chr9 78198841 78199033 -45877139 + B2_Mm1t SINE B2 1 190 -3 3 1181 389 130 0 52 chr9 78199123 78199206 -45876966 + CT-rich Low_complexity Low_complexity 15 93 0 3 1181 1406 84 21 0 chr9 78199206 78199396 -45876776 - B2_Mm2 SINE B2 0 195 2 3 1181 389 130 0 52 chr9 78199396 78199409 -45876763 + polypyrimidine Low_complexity Low_complexity 2 14 0 3 1181 229 281 10 50 chr9 78199433 78199534 -45876638 - B3 SINE B2 -14 202 106 3 1181 472 229 55 0 chr9 78199685 78199794 -45876378 - B1_Mm SINE Alu -1 146 32 3 1181 1634 37 0 0 chr9 78200075 78200265 -45875907 - B2_Mm1a SINE B2 -3 190 1 3 1181 21 36 0 0 chr9 78200406 78200434 -45875738 + AT_rich Low_complexity Low_complexity 1 28 0 3 1181 767 195 118 0 chr9 78200446 78200615 -45875557 - B3 SINE B2 -23 193 5 3 1181 459 267 50 0 chr9 78200639 78200759 -45875413 + B1F2 SINE Alu 12 137 -12 3 1181 278 140 0 138 chr9 78200760 78200818 -45875354 + B2_Mm2 SINE B2 2 51 -144 3 1181 381 82 16 0 chr9 78200811 78200872 -45875300 + B2_Mm1t SINE B2 131 192 -1 3 1181 418 257 99 79 chr9 78200921 78201073 -45875099 + B3A SINE B2 28 182 -16 3 1181 228 67 0 0 chr9 78201074 78201104 -45875068 + (TAA)n Simple_repeat Simple_repeat 1 30 0 3 1181 234 328 179 0 chr9 78201121 78201188 -45874984 + ID4 SINE ID 2 80 -3 3 1181 384 220 0 128 chr9 78201677 78201697 -45874475 + MT2B LTR ERVL 149 179 -422 3 1181 965 80 14 35 chr9 78201697 78201710 -45874462 + B1_Mm SINE Alu 3 15 -132 3 1181 4857 53 7 0 chr9 78201710 78202293 -45873879 - LTRIS_Mus LTR ERV1 0 587 1 3 1181 384 220 0 128 chr9 78202293 78202384 -45873788 + MT2B LTR ERVL 180 257 -344 3 1181 965 80 14 35 chr9 78202384 78202421 -45873751 + B1_Mm SINE Alu 16 141 -6 3 1181 489 76 0 0 chr9 78202423 78202489 -45873683 + (TAAA)n Simple_repeat Simple_repeat 4 69 0 3 1181 258 32 0 0 chr9 78202490 78202521 -45873651 + (TAA)n Simple_repeat Simple_repeat 3 33 0 3 1181 256 119 48 0 chr9 78202787 78202829 -45873343 - B1_Mur2 SINE Alu 0 149 106 3 1181 318 174 33 129 chr9 78203873 78204002 -45872170 + L1_Mur2 LINE L1 2739 2875 -3002 3 1181 881 151 13 20 chr9 78204023 78204172 -45872000 - B1_Mur4 SINE Alu 0 150 3 3 1181 1893 132 91 0 chr9 78204206 78204502 -45871670 + ORR1A4 LTR MaLR 2 324 -5 3 1181 781 191 231 0 chr9 78204541 78204714 -45871458 + B3 SINE B2 4 216 0 3 1181 1398 69 31 21 chr9 78204737 78204929 -45871243 + B2_Mm2 SINE B2 2 195 0 3 1181 1034 66 73 0 chr9 78204934 78205071 -45871101 + B1_Mus1 SINE Alu 2 148 0 3 1181 355 323 55 6 chr9 78205094 78205259 -45870913 + L1_Mur2 LINE L1 3461 3633 -2244 3 1181 844 180 19 78 chr9 78205267 78205472 -45870700 + B2_Mm2 SINE B2 1 193 -2 3 1181 282 45 0 43 chr9 78205475 78205521 -45870651 + B1_Mus2 SINE Alu 99 142 -5 3 1181 21 71 0 0 chr9 78205524 78205566 -45870606 + AT_rich Low_complexity Low_complexity 1 42 0 3 1181 303 225 78 0 chr9 78205698 78205785 -45870387 + ID4_ SINE ID 11 105 -47 3 1181 1072 82 76 0 chr9 78206148 78206306 -45869866 + B2_Mm1t SINE B2 4 173 -20 3 1181 288 0 0 0 chr9 78206422 78206454 -45869718 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1181 612 202 100 8 chr9 78206499 78206629 -45869543 + B1_Mur4 SINE Alu 5 146 -4 3 1181 753 79 42 42 chr9 78206786 78206905 -45869267 + B2_Mm1t SINE B2 75 193 0 3 1181 534 221 0 28 chr9 78208376 78208483 -45867689 + PB1D7 SINE Alu 10 113 -7 3 1181 442 244 112 9 chr9 78208488 78208604 -45867568 + RSINE1 SINE B4 1 128 -37 3 1181 251 115 0 37 chr9 78208612 78208666 -45867506 + GA-rich Low_complexity Low_complexity 3 54 0 3 1181 837 165 0 8 chr9 78208712 78208846 -45867326 + B1_Mus1 SINE Alu 9 141 -7 3 1181 180 0 0 0 chr9 78208848 78208868 -45867304 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 3 1181 442 241 111 8 chr9 78209006 78209123 -45867049 - RSINE1 SINE B4 -19 146 18 3 1181 622 125 28 19 chr9 78209485 78209591 -45866581 + PB1D9 SINE Alu 13 119 -1 3 1181 248 29 0 0 chr9 78209591 78209635 -45866537 + L1_Mus2 LINE L1 6529 6566 0 3 1181 1035 101 0 0 chr9 78209636 78209774 -45866398 + B1_Mus1 SINE Alu 1 138 -10 3 1181 358 20 39 0 chr9 78209774 78209825 -45866347 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 3 1181 285 194 0 88 chr9 78210153 78210221 -45865951 + B1_Mus1 SINE Alu 5 66 -82 3 1181 3833 104 19 16 chr9 78210620 78211185 -45864987 + RMER2 LTR ERV1 1 567 0 3 1181 705 188 22 15 chr9 78211188 78211323 -45864849 - B1_Mur4 SINE Alu -8 142 7 3 1181 520 295 80 5 chr9 78211470 78211671 -45864501 - ID_B1 SINE B4 -8 216 1 3 1181 1126 75 0 7 chr9 78211797 78211945 -45864227 - B1_Mm SINE Alu 0 147 1 4 1181 927 152 7 0 chr9 78211962 78212107 -45864065 + B1_Mus2 SINE Alu 1 146 -1 4 1181 354 138 0 0 chr9 78212107 78212165 -45864007 + (GAGAA)n Simple_repeat Simple_repeat 3 60 0 4 1181 777 210 93 11 chr9 78212189 78212372 -45863800 + B3 SINE B2 7 204 -12 4 1181 1200 74 0 0 chr9 78212388 78212537 -45863635 - B1_Mur4 SINE Alu 0 150 2 4 1181 195 69 0 0 chr9 78212555 78212584 -45863588 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1181 545 272 88 62 chr9 78212885 78213077 -45863095 + B3A SINE B2 2 198 0 4 1181 390 191 62 18 chr9 78213103 78213215 -45862957 + PB1D7 SINE Alu 4 120 0 4 1181 310 304 20 0 chr9 78213236 78213384 -45862788 + (TATATG)n Simple_repeat Simple_repeat 5 155 0 4 1181 1212 54 0 26 chr9 78213388 78213540 -45862632 + B1_Mus1 SINE Alu 1 148 0 4 1181 513 218 16 56 chr9 78213873 78213999 -45862173 + B1_Mur1 SINE Alu 29 149 0 4 1181 223 289 22 78 chr9 78214157 78214247 -45861925 + PB1D10 SINE Alu 2 86 -31 4 1181 460 204 43 0 chr9 78214428 78214521 -45861651 - B1F2 SINE Alu -5 144 48 4 1181 180 239 43 0 chr9 78214536 78214582 -45861590 - MIR SINE MIR -142 120 73 4 1181 219 36 0 0 chr9 78216156 78216184 -45859988 + (TGGGGG)n Simple_repeat Simple_repeat 1 28 0 4 1181 876 63 9 0 chr9 78216496 78216607 -45859565 - B1_Mus1 SINE Alu -21 127 16 4 1181 448 219 44 52 chr9 78216498 78216633 -45859539 - ID_B1 SINE B4 -21 203 70 4 1181 226 323 222 15 chr9 78216953 78217088 -45859084 - B3A SINE B2 -26 172 10 4 1181 254 167 0 36 chr9 78217151 78217207 -45858965 - RMER10A LTR ERVL 0 442 389 4 1181 886 221 97 22 chr9 78217210 78217437 -45858735 - RMER10A LTR ERVL -194 248 5 4 1181 313 260 175 29 chr9 78217456 78217559 -45858613 - RSINE1 SINE B4 -47 118 1 4 1181 198 91 0 0 chr9 78217670 78217703 -45858469 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1181 903 124 29 0 chr9 78217831 78217968 -45858204 - B1_Mus2 SINE Alu -6 141 1 4 1181 270 0 0 0 chr9 78218015 78218045 -45858127 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1181 21 0 0 0 chr9 78218414 78218435 -45857737 + AT_rich Low_complexity Low_complexity 1 21 0 4 1181 3352 86 21 35 chr9 78218494 78218975 -45857197 - MT2C_Mm LTR ERVL -1 474 1 4 1181 1293 87 27 11 chr9 78218992 78219178 -45856994 - B2_Mm2 SINE B2 -5 190 2 4 1181 583 263 126 58 chr9 78219325 78219531 -45856641 + RLTR41 LTR ERV1 3 222 -224 4 1181 1140 117 47 0 chr9 78219531 78219702 -45856470 + B2_Mm1t SINE B2 1 179 -14 4 1181 1015 70 41 21 chr9 78219702 78219846 -45856326 - B1_Mus1 SINE Alu 0 148 1 4 1181 189 107 0 0 chr9 78219861 78219889 -45856283 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1181 1419 137 8 45 chr9 78219889 78220134 -45856038 + RLTR41 LTR ERV1 211 446 0 4 1181 629 283 47 31 chr9 78220234 78220427 -45855745 - B3 SINE B2 -20 196 1 4 1181 1309 193 62 16 chr9 78220467 78220725 -45855447 + MTC LTR MaLR 5 274 -147 4 1181 345 118 422 10 chr9 78221166 78221268 -45854904 - B2_Mm2 SINE B2 -5 190 47 4 1181 1192 61 0 20 chr9 78221304 78221454 -45854718 + B1_Mus2 SINE Alu 1 147 0 4 1181 804 51 0 0 chr9 78221463 78221561 -45854611 - B2_Mm2 SINE B2 -43 152 55 4 1181 289 305 52 59 chr9 78221820 78221956 -45854216 + LTR37A LTR ERV1 236 370 -56 4 1181 310 265 113 8 chr9 78221968 78222101 -45854071 + RSINE1 SINE B4 2 148 -17 4 1181 385 307 31 0 chr9 78222329 78222456 -45853716 + ID_B1 SINE B4 54 184 -40 4 1181 565 339 31 18 chr9 78222521 78222749 -45853423 + B4A SINE B4 1 231 -61 4 1181 473 207 39 55 chr9 78222752 78222880 -45853292 + B1_Mus2 SINE Alu 6 131 -18 4 1181 418 242 67 22 chr9 78222868 78223003 -45853169 + B1_Mus2 SINE Alu 6 146 -1 4 1181 396 40 0 0 chr9 78223072 78223122 -45853050 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1181 259 319 92 0 chr9 78223177 78223296 -45852876 - MLT1A LTR MaLR 0 374 245 4 1181 689 85 111 37 chr9 78223480 78223615 -45852557 + B2_Mm2 SINE B2 1 145 -50 4 1181 883 160 72 63 chr9 78223689 78223896 -45852276 + B3 SINE B2 6 214 -2 4 1181 458 168 37 22 chr9 78224359 78224469 -45851703 - PB1D9 SINE Alu -7 113 1 4 1181 296 263 52 21 chr9 78224386 78224483 -45851689 - B4 SINE B4 -123 169 70 4 1181 586 188 101 0 chr9 78224497 78224635 -45851537 - URR1A DNA MER1_type 0 226 75 4 1181 619 176 61 8 chr9 78224699 78224831 -45851341 + B1_Mur2 SINE Alu 1 139 -10 4 1181 1164 75 0 0 chr9 78224916 78225062 -45851110 + B1_Mus2 SINE Alu 2 147 0 4 1181 21 0 0 0 chr9 78226425 78226446 -45849726 + GC_rich Low_complexity Low_complexity 1 21 0 4 1181 183 42 0 0 chr9 78227089 78227113 -45849059 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1181 244 270 77 51 chr9 78227857 78227974 -45848198 - B4A SINE B4 -33 259 140 4 1181 944 135 0 21 chr9 78228940 78229084 -45847088 - B1_Mus2 SINE Alu -6 141 1 4 1181 189 0 0 0 chr9 78229386 78229407 -45846765 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1181 1188 62 0 0 chr9 78229893 78230039 -45846133 - B1_Mus2 SINE Alu 0 147 2 4 1181 955 99 47 14 chr9 78230300 78230501 -45845671 - ORR1A2 LTR MaLR -4 390 178 4 1181 793 107 82 22 chr9 78230739 78230873 -45845299 - B1_Mur4 SINE Alu -8 142 1 4 1181 229 148 66 0 chr9 78230894 78230955 -45845217 + (TATAA)n Simple_repeat Simple_repeat 4 68 0 4 1181 23 78 0 0 chr9 78231274 78231325 -45844847 + AT_rich Low_complexity Low_complexity 1 51 0 4 1181 24 0 0 0 chr9 78231516 78231540 -45844632 + AT_rich Low_complexity Low_complexity 1 24 0 4 1181 549 194 88 0 chr9 78232065 78232183 -45843989 + B1_Mur2 SINE Alu 15 142 -7 4 1181 195 162 0 0 chr9 78232183 78232220 -45843952 + GA-rich Low_complexity Low_complexity 1 37 0 4 1181 404 306 0 56 chr9 78232254 78232396 -45843776 + B3A SINE B2 24 157 -41 4 1181 189 0 0 0 chr9 78232406 78232427 -45843745 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1181 22 35 0 0 chr9 78232429 78232458 -45843714 + AT_rich Low_complexity Low_complexity 1 29 0 4 1181 1215 41 7 0 chr9 78232467 78232612 -45843560 + B1_Mus2 SINE Alu 2 147 0 4 1181 230 0 33 0 chr9 78232626 78232656 -45843516 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1181 207 0 0 0 chr9 78233260 78233283 -45842889 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1181 1119 48 0 64 chr9 78233283 78233432 -45842740 - B1_Mm SINE Alu -6 141 2 4 1181 1194 68 0 0 chr9 78233584 78233730 -45842442 - B1_Mus2 SINE Alu 0 147 2 4 1181 560 176 94 14 chr9 78233771 78233909 -45842263 - B1_Mur1 SINE Alu 0 149 1 4 1181 337 155 93 93 chr9 78233909 78234003 -45842169 + B2_Mm2 SINE B2 99 192 -3 4 1181 288 137 0 0 chr9 78234073 78234124 -45842048 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 4 1181 252 0 0 0 chr9 78234323 78234351 -45841821 + (TTC)n Simple_repeat Simple_repeat 2 29 0 4 1181 650 124 405 0 chr9 78234381 78234534 -45841638 - B3 SINE B2 -1 215 1 4 1181 509 333 11 16 chr9 78235314 78235500 -45840672 + ID_B1 SINE B4 6 190 -34 4 1181 1294 114 33 0 chr9 78235530 78235714 -45840458 + B2_Mm1t SINE B2 1 190 -3 4 1181 468 77 0 0 chr9 78236258 78236323 -45839849 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 4 1181 377 86 17 0 chr9 78236557 78236615 -45839557 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 4 1181 760 73 113 0 chr9 78237300 78237424 -45838748 - B2_Mm2 SINE B2 -7 188 51 4 1181 2000 113 12 51 chr9 78237559 78237894 -45838278 - RLTRETN_Mm LTR ERVK 0 322 1 4 1181 1503 68 5 0 chr9 78238260 78238452 -45837720 - B2_Mm1a SINE B2 0 193 1 4 1181 1396 59 5 11 chr9 78238476 78238663 -45837509 - B2_Mm1a SINE B2 -6 187 2 4 1181 1590 215 25 6 chr9 78239289 78239644 -45836528 - ORR1D1 LTR MaLR -4 370 9 4 1181 2544 86 3 0 chr9 78239651 78239977 -45836195 + ORR1A2 LTR MaLR 1 327 0 4 1181 246 249 25 117 chr9 78240782 78240810 -45835362 + L1_Mur1 LINE L1 1473 1498 -4388 4 1181 1183 68 0 0 chr9 78240810 78240957 -45835215 + B1_Mus2 SINE Alu 1 147 0 4 1181 186 71 0 0 chr9 78240958 78240986 -45835186 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1181 368 274 23 41 chr9 78240986 78241157 -45835015 + L1_Mur3 LINE L1 1492 1659 -4221 4 1181 569 270 26 19 chr9 78241172 78241327 -45834845 + RSINE1 SINE B4 9 164 -1 4 1181 234 270 32 63 chr9 78241452 78241547 -45834625 + B3 SINE B2 1 92 -124 4 1181 279 161 0 0 chr9 78241767 78241823 -45834349 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1181 259 261 59 25 chr9 78242484 78242602 -45833570 + L1MC LINE L1 3648 3769 -2377 4 1181 189 0 0 0 chr9 78244640 78244661 -45831511 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1181 213 167 131 16 chr9 78244667 78244728 -45831444 - ID4_ SINE ID -13 70 3 4 1181 273 275 132 58 chr9 78245019 78245224 -45830948 - L1MB1 LINE L1 -156 6012 5793 4 1181 368 65 190 25 chr9 78245223 78245302 -45830870 - Lx2 LINE L1 0 6997 6906 4 1181 239 306 24 112 chr9 78245643 78245768 -45830404 + PB1D9 SINE Alu 1 114 -6 4 1181 1189 55 7 0 chr9 78245980 78246126 -45830046 - B1_Mus2 SINE Alu 0 147 1 4 1181 404 266 44 9 chr9 78246168 78246282 -45829890 + B1F SINE Alu 1 118 -31 5 1181 201 39 0 0 chr9 78246296 78246322 -45829850 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1181 1117 96 0 0 chr9 78246441 78246598 -45829574 + B2_Mm2 SINE B2 2 158 -37 5 1181 297 0 0 0 chr9 78246599 78246632 -45829540 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 5 1181 729 234 6 6 chr9 78247123 78247282 -45828890 + B3 SINE B2 2 160 -56 5 1181 1082 250 182 18 chr9 78247384 78247840 -45828332 + Lx9 LINE L1 7101 7631 -13 5 1181 878 146 7 46 chr9 78247913 78248064 -45828108 + B1_Mur3 SINE Alu 5 149 0 5 1181 477 252 31 8 chr9 78248317 78248445 -45827727 - RSINE1 SINE B4 -33 132 2 5 1181 312 48 0 0 chr9 78248856 78248898 -45827274 + (TTG)n Simple_repeat Simple_repeat 1 42 0 5 1181 770 201 8 0 chr9 78248898 78249032 -45827140 - B1_Mur1 SINE Alu -13 136 2 5 1181 333 220 43 60 chr9 78249076 78249192 -45826980 - PB1D10 SINE Alu 0 117 4 5 1181 425 297 32 41 chr9 78249334 78249457 -45826715 + RSINE1 SINE B4 22 143 -22 5 1181 471 35 0 0 chr9 78249673 78249730 -45826442 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 147 238 280 83 60 chr9 78249892 78250025 -45826147 - B4A SINE B4 -155 137 2 5 1182 2529 239 75 85 chr9 78250358 78250860 -45825312 + RCHARR1 DNA MER1_type 3 480 -494 5 1182 944 177 0 0 chr9 78250860 78251007 -45825165 + B1_Mur1 SINE Alu 2 148 -1 5 1182 2529 239 75 85 chr9 78251007 78251245 -45824927 + RCHARR1 DNA MER1_type 481 753 -221 5 1182 1007 125 7 0 chr9 78251245 78251389 -45824783 + B1_Mus1 SINE Alu 3 147 -1 5 1182 2529 239 75 85 chr9 78251389 78251625 -45824547 + RCHARR1 DNA MER1_type 754 970 -4 5 1182 640 253 168 62 chr9 78251705 78251949 -45824223 + B4A SINE B4 3 272 -20 5 1182 561 242 76 41 chr9 78252186 78252358 -45823814 + B4A SINE B4 30 207 -85 5 1182 205 260 20 0 chr9 78252385 78252435 -45823737 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1182 250 279 25 25 chr9 78252497 78252578 -45823594 + ID2 SINE ID 1 81 -2 5 1182 591 265 36 51 chr9 78252598 78252793 -45823379 + B3A SINE B2 5 196 -2 5 1182 651 208 0 16 chr9 78252793 78252914 -45823258 + PB1D9 SINE Alu 1 120 0 5 1182 1248 34 0 0 chr9 78252927 78253075 -45823097 + B1_Mus1 SINE Alu 1 148 0 5 1182 2318 53 53 0 chr9 78253203 78253505 -45822667 + L1_Mus2 LINE L1 6249 6566 0 5 1182 907 158 0 0 chr9 78253535 78253668 -45822504 + B1_Mur2 SINE Alu 1 133 -16 5 1182 652 274 12 8 chr9 78253724 78253918 -45822254 + B3A SINE B2 15 211 -5 5 1182 439 156 13 0 chr9 78254411 78254488 -45821684 + PB1D10 SINE Alu 1 78 -39 5 1182 252 299 0 0 chr9 78254874 78254941 -45821231 + ID4_ SINE ID 2 68 -15 5 1182 970 219 17 56 chr9 78254961 78255193 -45820979 + ID_B1 SINE B4 2 224 0 5 1182 328 253 55 0 chr9 78255347 78255438 -45820734 - B3A SINE B2 -102 96 1 5 1182 513 209 61 67 chr9 78255617 78255781 -45820391 - RSINE1 SINE B4 0 165 3 5 1182 524 244 67 30 chr9 78255835 78256000 -45820172 + B4A SINE B4 118 288 -4 5 1182 860 221 58 14 chr9 78256052 78256259 -45819913 + B3 SINE B2 1 216 0 5 1182 779 235 33 10 chr9 78256280 78256478 -45819694 + B3 SINE B2 2 216 0 5 1182 477 242 168 8 chr9 78256733 78256858 -45819314 + RSINE1 SINE B4 3 147 -18 5 1182 760 250 66 0 chr9 78256919 78257115 -45819057 - ID_B1 SINE B4 -2 222 14 5 1182 225 289 144 0 chr9 78257275 78257365 -45818807 - RSINE1 SINE B4 -62 103 1 5 1182 903 293 28 45 chr9 78257372 78257808 -45818364 - Lx9 LINE L1 -1 7472 7039 5 1182 851 149 44 108 chr9 78257895 78258056 -45818116 - B2_Mm2 SINE B2 -3 192 37 5 1182 207 0 0 0 chr9 78258056 78258079 -45818093 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1182 1097 70 7 0 chr9 78258079 78258222 -45817950 - B1_Mus2 SINE Alu -2 145 2 5 1182 851 149 44 108 chr9 78258222 78258262 -45817910 - B2_Mm2 SINE B2 -159 36 4 5 1182 768 270 34 10 chr9 78258303 78258509 -45817663 - B3 SINE B2 -5 211 1 5 1182 1603 48 5 0 chr9 78258538 78258727 -45817445 - B2_Mm1t SINE B2 -3 190 1 5 1182 388 274 74 33 chr9 78258776 78258897 -45817275 + ID_B1 SINE B4 79 204 -20 5 1182 358 210 148 10 chr9 78259139 78259240 -45816932 - PB1D10 SINE Alu -1 116 2 5 1182 1227 34 0 7 chr9 78259717 78259865 -45816307 + B1_Mm SINE Alu 1 147 0 5 1182 191 36 36 0 chr9 78259867 78259895 -45816277 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 1182 241 342 0 0 chr9 78260958 78261034 -45815138 - ID4 SINE ID -6 77 2 5 1182 577 143 64 1 chr9 78261089 78261208 -45814964 + B1_Mus1 SINE Alu 20 148 0 5 1182 682 176 137 0 chr9 78262322 78262453 -45813719 - B1_Mur1 SINE Alu 0 149 1 5 1182 313 359 34 14 chr9 78262464 78262611 -45813561 - RSINE1 SINE B4 -6 159 10 5 1182 1187 105 17 0 chr9 78262776 78262948 -45813224 + B2_Mm1a SINE B2 1 175 -18 5 1182 180 0 0 0 chr9 78262961 78262981 -45813191 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1182 602 217 50 20 chr9 78263011 78263186 -45812986 + B3A SINE B2 1 179 -16 5 1182 537 229 248 0 chr9 78263218 78263371 -45812801 + Lx8 LINE L1 6962 7152 -321 5 1182 408 20 0 0 chr9 78263493 78263542 -45812630 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1182 1298 20 0 0 chr9 78264010 78264156 -45812016 - B1_Mus2 SINE Alu 0 147 2 5 1182 21 0 0 0 chr9 78264218 78264239 -45811933 + AT_rich Low_complexity Low_complexity 1 21 0 5 1182 238 228 158 0 chr9 78264614 78264671 -45811501 + ID4_ SINE ID 8 73 -10 5 1182 363 235 113 40 chr9 78265174 78265298 -45810874 + B4A SINE B4 141 273 -19 5 1182 1514 133 233 3 chr9 78266501 78266802 -45809370 - ORR1D1 LTR MaLR 0 374 5 5 1182 854 151 130 28 chr9 78267420 78267597 -45808575 - B2_Mm2 SINE B2 0 195 1 5 1182 398 241 13 0 chr9 78267616 78267695 -45808477 - ID4 SINE ID -2 81 2 5 1182 654 305 112 50 chr9 78267924 78268245 -45807927 + MER2 DNA MER2_type 5 345 0 5 1182 315 315 111 7 chr9 78268846 78268990 -45807182 + RSINE1 SINE B4 3 161 -4 5 1182 670 267 80 25 chr9 78269024 78269224 -45806948 + B3 SINE B2 1 211 -5 5 1182 509 208 168 0 chr9 78269700 78269825 -45806347 - B1_Mur2 SINE Alu -1 148 3 5 1182 336 247 118 0 chr9 78269938 78270023 -45806149 - PB1D10 SINE Alu -3 114 20 5 1182 27 0 0 0 chr9 78270084 78270111 -45806061 + AT_rich Low_complexity Low_complexity 1 27 0 5 1182 682 247 127 139 chr9 78270197 78270441 -45805731 + L1MB2 LINE L1 5509 5777 -394 5 1182 1410 79 26 5 chr9 78270441 78270631 -45805541 + B2_Mm2 SINE B2 2 195 0 5 1182 682 248 125 136 chr9 78270631 78271044 -45805128 + L1MB2 LINE L1 5778 6170 -10 5 1182 857 175 35 7 chr9 78271066 78271210 -45804962 + B1_Mus1 SINE Alu 1 148 0 5 1182 243 167 0 40 chr9 78271518 78271568 -45804604 - ID_B1 SINE B4 -87 137 90 5 1182 375 291 73 0 chr9 78271633 78271743 -45804429 - Tigger7 DNA MER2_type -8 2483 2366 5 1182 896 249 121 113 chr9 78271750 78272122 -45804050 + MTE2b LTR MaLR 3 377 -2 5 1182 678 253 12 42 chr9 78272172 78272234 -45803938 - B4A SINE B4 -7 285 230 5 1182 784 135 321 12 chr9 78272234 78272399 -45803773 - B3 SINE B2 0 216 1 5 1182 678 253 12 42 chr9 78272399 78272501 -45803671 - B4A SINE B4 -63 229 126 5 1182 615 281 0 44 chr9 78272667 78272827 -45803345 - RSINE1 SINE B4 0 165 13 5 1182 237 288 0 59 chr9 78272757 78272842 -45803330 - B3A SINE B2 -118 80 1 5 1182 1282 53 107 0 chr9 78272960 78273129 -45803043 - B2_Mm2 SINE B2 -8 187 1 5 1182 1485 267 80 114 chr9 78273132 78273397 -45802775 - Tigger7 DNA MER2_type -1629 862 582 5 1182 1148 68 0 0 chr9 78273397 78273543 -45802629 - B1_Mus2 SINE Alu 0 147 2 5 1182 1485 267 80 114 chr9 78273543 78273708 -45802464 - Tigger7 DNA MER2_type -1910 581 402 5 1182 663 245 69 54 chr9 78273708 78273911 -45802261 - B3 SINE B2 -10 206 1 5 1182 1485 267 80 114 chr9 78273911 78274070 -45802102 - Tigger7 DNA MER2_type -2090 401 247 5 1182 801 231 66 10 chr9 78274070 78274267 -45801905 + B3 SINE B2 5 212 -4 5 1182 1485 267 80 114 chr9 78274267 78274287 -45801885 - Tigger7 DNA MER2_type -2245 246 246 5 1182 1224 41 7 0 chr9 78274287 78274433 -45801739 - B1_Mus1 SINE Alu 0 148 2 5 1182 1485 267 80 114 chr9 78274433 78274703 -45801469 - Tigger7 DNA MER2_type -2245 246 10 5 1182 230 238 0 0 chr9 78274726 78274768 -45801404 - L1M4b LINE L1 -6672 662 621 5 1182 476 114 227 17 chr9 78275081 78275216 -45800956 + Lx LINE L1 6476 6654 0 5 1182 21 0 0 0 chr9 78275364 78275385 -45800787 + GC_rich Low_complexity Low_complexity 1 21 0 5 1182 198 0 0 0 chr9 78277238 78277260 -45798912 + (CCCCCA)n Simple_repeat Simple_repeat 5 26 0 5 1182 237 167 0 0 chr9 78277793 78277829 -45798343 + B3A SINE B2 27 62 -136 5 1182 26 0 0 0 chr9 78278053 78278079 -45798093 + AT_rich Low_complexity Low_complexity 1 26 0 5 1182 213 200 0 0 chr9 78278152 78278197 -45797975 + G-rich Low_complexity Low_complexity 1 45 0 5 1182 1059 64 57 0 chr9 78278979 78279119 -45797053 - B1_Mus1 SINE Alu 0 148 1 5 1182 213 36 0 0 chr9 78279119 78279141 -45797031 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1182 443 294 10 4 chr9 78279445 78279558 -45796614 - PB1D7 SINE Alu 0 120 7 5 1182 490 236 85 2 chr9 78279616 78279763 -45796409 - B3 SINE B2 -27 171 4 5 1182 360 259 57 89 chr9 78279763 78279845 -45796327 - ID_B1 SINE B4 -16 208 122 5 1182 1622 185 3 77 chr9 78279845 78280196 -45795976 + ORR1A4 LTR MaLR 3 327 -2 5 1182 360 259 57 89 chr9 78280196 78280224 -45795948 - ID_B1 SINE B4 -103 121 102 5 1182 759 281 16 5 chr9 78280273 78280459 -45795713 + B4 SINE B4 3 190 -102 5 1182 210 317 75 47 chr9 78280364 78280470 -45795702 + PB1D9 SINE Alu 11 119 -1 6 1182 762 172 16 0 chr9 78280483 78280611 -45795561 + B1_Mus2 SINE Alu 10 139 -8 6 1182 319 284 162 47 chr9 78281097 78281122 -45795050 - B4A SINE B4 -46 246 86 6 1182 551 212 8 50 chr9 78281122 78281241 -45794931 - PB1D9 SINE Alu -6 114 1 6 1182 542 267 59 0 chr9 78281280 78281415 -45794757 - ID_B1 SINE B4 -6 218 76 6 1182 45 0 0 0 chr9 78281422 78281467 -45794705 + AT_rich Low_complexity Low_complexity 1 45 0 6 1182 1107 69 87 6 chr9 78281467 78281628 -45794544 - B2_Mm1t SINE B2 -10 183 10 6 1182 255 320 13 0 chr9 78281558 78281636 -45794536 - RSINE1 SINE B4 -85 80 2 6 1182 534 246 40 0 chr9 78281813 78281939 -45794233 + B1F1 SINE Alu 1 131 -18 6 1182 1137 82 0 20 chr9 78282345 78282495 -45793677 + B1_Mus1 SINE Alu 2 148 0 6 1182 249 155 0 0 chr9 78282497 78282555 -45793617 + A-rich Low_complexity Low_complexity 1 58 0 6 1182 471 221 11 0 chr9 78282967 78283062 -45793110 - ID_B1 SINE B4 -5 219 124 6 1182 2559 123 81 7 chr9 78283728 78283830 -45792342 - RMER4A LTR ERVK 0 466 348 6 1182 815 83 17 0 chr9 78283830 78283950 -45792222 + (GGGGA)n Simple_repeat Simple_repeat 5 126 0 6 1182 2559 123 81 7 chr9 78283950 78284281 -45791891 - RMER4A LTR ERVK -119 347 2 6 1182 240 293 34 17 chr9 78284451 78284510 -45791662 + ID4 SINE ID 17 76 -7 6 1182 297 235 87 130 chr9 78284564 78284794 -45791378 + MT2B LTR ERVL 31 250 -351 6 1182 524 223 9 43 chr9 78284712 78284844 -45791328 + B1_Mur1 SINE Alu 9 144 -6 6 1182 449 214 0 12 chr9 78285522 78285607 -45790565 - B1F SINE Alu 0 149 66 6 1182 581 250 13 59 chr9 78285602 78285755 -45790417 + B3A SINE B2 53 198 0 6 1182 233 288 55 0 chr9 78285772 78285845 -45790327 + L1M5 LINE L1 3497 3573 -2573 6 1182 269 286 101 101 chr9 78285871 78286019 -45790153 + B4 SINE B4 76 223 -69 6 1182 429 287 24 24 chr9 78285896 78286021 -45790151 + B1_Mur1 SINE Alu 25 149 0 6 1182 23 0 0 0 chr9 78286047 78286070 -45790102 + AT_rich Low_complexity Low_complexity 1 23 0 6 1182 1418 63 6 0 chr9 78286079 78286253 -45789919 + B2_Mm1t SINE B2 1 175 -18 6 1182 239 283 25 131 chr9 78286298 78286324 -45789848 + MT2B2 LTR ERVL 142 154 -430 6 1182 509 278 0 34 chr9 78286324 78286443 -45789729 + PB1D10 SINE Alu 1 115 -2 6 1182 724 251 106 5 chr9 78286524 78286712 -45789460 + ID_B1 SINE B4 15 221 -3 6 1182 865 219 118 0 chr9 78286788 78286966 -45789206 - B3 SINE B2 -11 205 7 6 1182 360 279 221 0 chr9 78287056 78287210 -45788962 - L1M5 LINE L1 -1826 4320 4133 6 1182 627 155 42 33 chr9 78287267 78287387 -45788785 - B1_Mur2 SINE Alu -1 148 28 6 1182 258 239 149 40 chr9 78287324 78287398 -45788774 - 4.5SRNA scRNA scRNA -6 88 7 6 1182 646 151 19 0 chr9 78287487 78287593 -45788579 + RMER10A LTR ERVL 1 108 -334 6 1182 267 261 169 68 chr9 78287638 78287786 -45788386 + MTC-int LTR MaLR 910 1072 -186 6 1182 2502 205 17 52 chr9 78287863 78288456 -45787716 + RLTR19-int LTR ERVK 2452 3023 -3114 6 1182 207 156 0 0 chr9 78288717 78288749 -45787423 + C-rich Low_complexity Low_complexity 4 35 0 6 1182 952 153 77 113 chr9 78288798 78289103 -45787069 + RLTR19-int LTR ERVK 2609 2873 -365 6 1182 284 226 116 68 chr9 78289122 78289269 -45786903 + RLTR19-int LTR ERVK 3026 3179 -59 6 1182 815 229 90 16 chr9 78289311 78289622 -45786550 + RMER10B LTR ERVL 32 365 -77 6 1182 987 170 19 70 chr9 78289597 78289812 -45786360 + RMER10B LTR ERVL 195 398 0 6 1182 1137 49 21 0 chr9 78291303 78291447 -45784725 - B1_Mus2 SINE Alu 0 147 1 6 1182 453 158 0 0 chr9 78291948 78292030 -45784142 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1182 432 210 180 0 chr9 78292293 78292393 -45783779 + B1_Mus2 SINE Alu 25 142 -5 6 1182 282 95 0 0 chr9 78292406 78292448 -45783724 + (GGA)n Simple_repeat Simple_repeat 1 42 0 6 1182 410 266 63 18 chr9 78292619 78292730 -45783442 + PB1 SINE Alu 9 124 -3 6 1182 591 98 65 0 chr9 78293025 78293117 -45783055 - B1_Mur4 SINE Alu -10 140 43 6 1182 395 0 0 163 chr9 78293122 78293365 -45782807 + (CTCTG)n Simple_repeat Simple_repeat 1 203 0 6 1182 311 127 36 18 chr9 78293365 78293421 -45782751 - B1F SINE Alu -92 57 1 6 1182 300 226 19 0 chr9 78293583 78293636 -45782536 + B1F2 SINE Alu 53 106 -43 6 1182 423 277 0 0 chr9 78293803 78293904 -45782268 + PB1D10 SINE Alu 17 117 0 6 1182 481 271 28 0 chr9 78293917 78294024 -45782148 + PB1D7 SINE Alu 8 117 -3 6 1182 375 313 60 139 chr9 78294027 78294279 -45781893 + B4 SINE B4 1 232 -60 6 1182 317 24 24 0 chr9 78294350 78294392 -45781780 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1182 454 263 7 34 chr9 78294479 78294602 -45781570 - B1_Mm SINE Alu 0 147 1 6 1182 462 309 77 26 chr9 78294621 78294777 -45781395 + RSINE1 SINE B4 2 165 0 6 1182 23 0 0 0 chr9 78294794 78294817 -45781355 + AT_rich Low_complexity Low_complexity 1 23 0 6 1182 511 274 187 5 chr9 78294908 78295095 -45781077 - RMER15 LTR ERVL -19 556 336 6 1182 660 224 40 107 chr9 78295429 78295654 -45780518 + B3 SINE B2 1 210 -6 6 1182 452 274 27 0 chr9 78296629 78296775 -45779397 - L1M2 LINE L1 -518 5782 5633 6 1182 547 191 0 0 chr9 78296859 78296953 -45779219 - B1_Mur2 SINE Alu -54 95 2 6 1182 258 318 97 39 chr9 78297685 78297839 -45778333 + L4 LINE RTE 1680 1842 -187 6 1182 1198 48 0 13 chr9 78297849 78297998 -45778174 + B1_Mus1 SINE Alu 2 148 0 6 1182 214 167 0 0 chr9 78297998 78298040 -45778132 + A-rich Low_complexity Low_complexity 1 42 0 6 1182 216 0 0 0 chr9 78298134 78298158 -45778014 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1182 383 234 39 0 chr9 78298159 78298236 -45777936 - RSINE1 SINE B4 -75 90 11 6 1182 1826 207 68 13 chr9 78298338 78298734 -45777438 - MTC LTR MaLR 0 421 4 6 1182 240 35 0 0 chr9 78298873 78298902 -45777270 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 6 1182 510 245 9 0 chr9 78298902 78299008 -45777164 - PB1D9 SINE Alu 0 120 14 6 1182 311 268 206 24 chr9 78299008 78299028 -45777144 - ID_B1 SINE B4 0 224 76 6 1182 244 238 127 0 chr9 78299235 78299298 -45776874 - B4A SINE B4 -6 286 216 6 1182 229 263 172 40 chr9 78299355 78299454 -45776718 - RSINE1 SINE B4 -52 113 2 6 1182 335 191 0 0 chr9 78299461 78299524 -45776648 - B4A SINE B4 -67 225 163 6 1182 259 280 33 25 chr9 78299616 78299737 -45776435 + L1MA9 LINE L1 6000 6121 -191 6 1182 1304 20 0 0 chr9 78299744 78299891 -45776281 - B1_Mus2 SINE Alu 0 147 1 6 1182 671 190 0 8 chr9 78300031 78300148 -45776024 + PB1D9 SINE Alu 2 117 -3 6 1182 926 168 7 0 chr9 78300316 78300465 -45775707 - B1_Mur4 SINE Alu 0 150 1 6 1182 1510 177 96 40 chr9 78301071 78301424 -45774748 - ORR1D1 LTR MaLR 0 374 2 6 1182 380 304 35 26 chr9 78301735 78301850 -45774322 - RSINE1 SINE B4 -47 118 3 6 1182 265 342 0 0 chr9 78301895 78301968 -45774204 - ID4_ SINE ID -10 73 1 6 1182 1049 184 59 5 chr9 78302025 78302227 -45773945 + B3 SINE B2 1 213 -3 6 1182 591 295 53 32 chr9 78302287 78302476 -45773696 - B3A SINE B2 -4 194 2 6 1182 545 300 29 0 chr9 78303014 78303154 -45773018 - RSINE1 SINE B4 -6 159 16 6 1182 372 94 0 0 chr9 78303154 78303207 -45772965 + (ATTG)n Simple_repeat Simple_repeat 4 56 0 6 1182 548 210 118 0 chr9 78303210 78303329 -45772843 - B1_Mur4 SINE Alu -17 133 1 6 1182 379 255 102 0 chr9 78303474 78303572 -45772600 - PB1D10 SINE Alu -4 113 6 6 1182 458 231 94 21 chr9 78303610 78303626 -45772546 - B4 SINE B4 -70 222 160 6 1182 656 136 58 0 chr9 78303626 78303729 -45772443 - B1_Mus2 SINE Alu -30 117 9 6 1182 364 227 75 105 chr9 78303636 78303769 -45772403 - MT2B LTR ERVL -338 263 135 6 1182 458 231 94 21 chr9 78303729 78303747 -45772425 - B4 SINE B4 -70 159 77 6 1182 808 71 17 42 chr9 78303796 78303914 -45772258 + PB1D9 SINE Alu 1 115 -5 6 1182 346 276 118 0 chr9 78304849 78304976 -45771196 + B1F1 SINE Alu 6 147 -2 6 1182 337 248 37 37 chr9 78305503 78305612 -45770560 + PB1D10 SINE Alu 1 109 -8 6 1182 695 227 21 7 chr9 78305864 78306006 -45770166 - B1_Mur2 SINE Alu -1 148 5 6 1182 248 174 0 61 chr9 78306154 78306203 -45769969 - PB1 SINE Alu 0 127 82 6 1182 236 129 0 103 chr9 78306203 78306281 -45769891 + T-rich Low_complexity Low_complexity 1 70 0 6 1182 663 204 43 7 chr9 78306281 78306419 -45769753 - ID_B1 SINE B4 0 224 82 6 1182 266 225 53 53 chr9 78306417 78306492 -45769680 - B1F1 SINE Alu -74 75 1 6 1182 265 347 0 0 chr9 78306650 78306722 -45769450 - B4A SINE B4 0 292 221 6 1182 1034 229 5 14 chr9 78306723 78306931 -45769241 - B3 SINE B2 -7 209 4 6 1182 584 310 58 11 chr9 78306948 78307137 -45769035 - B3A SINE B2 0 198 1 6 1182 499 235 100 8 chr9 78307137 78307244 -45768928 - B4A SINE B4 -60 232 115 6 1182 1629 21 27 0 chr9 78307313 78307500 -45768672 - B2_Mm1t SINE B2 0 193 2 6 1182 467 157 11 0 chr9 78307600 78307689 -45768483 + (TATG)n Simple_repeat Simple_repeat 1 90 0 6 1182 1776 10 0 0 chr9 78307707 78307900 -45768272 + B2_Mm1t SINE B2 1 193 0 6 1182 1731 123 83 0 chr9 78307900 78308176 -45767996 - ORR1C1 LTR MaLR -58 320 22 6 1182 963 127 7 0 chr9 78308387 78308529 -45767643 - B1_Mus2 SINE Alu 0 147 5 6 1182 239 264 130 54 chr9 78308905 78308997 -45767175 - PB1 SINE Alu -4 123 25 6 1182 1381 57 17 0 chr9 78309107 78309283 -45766889 - B2_Mm1t SINE B2 -14 179 1 7 1182 326 319 25 50 chr9 78309557 78309676 -45766496 + ID_B1 SINE B4 107 222 -2 7 1182 318 237 0 0 chr9 78309701 78309760 -45766412 + ID4_ SINE ID 3 61 -22 7 1182 243 149 40 0 chr9 78309855 78309929 -45766243 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1182 914 198 52 0 chr9 78309929 78310121 -45766051 - B3 SINE B2 -13 203 2 7 1182 321 155 0 0 chr9 78310478 78310536 -45765636 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1182 225 253 143 12 chr9 78311056 78311140 -45765032 - MLT1A LTR MaLR -267 107 13 7 1182 319 319 32 0 chr9 78311777 78311871 -45764301 - PB1D10 SINE Alu -8 109 13 7 1182 476 191 105 61 chr9 78311965 78312084 -45764088 - B1F2 SINE Alu -2 147 44 7 1182 1087 101 24 104 chr9 78312084 78312128 -45764044 - B2_Mm2 SINE B2 0 195 162 7 1182 1613 36 0 20 chr9 78312128 78312324 -45763848 + B2_Mm1a SINE B2 2 193 0 7 1182 1087 101 24 104 chr9 78312324 78312490 -45763682 - B2_Mm2 SINE B2 -34 161 2 7 1182 474 222 64 220 chr9 78312490 78312543 -45763629 - B1_Mur2 SINE Alu -105 44 2 7 1182 215 328 31 0 chr9 78312491 78312555 -45763617 - ID_B1 SINE B4 -90 134 69 7 1182 1196 55 0 20 chr9 78313219 78313368 -45762804 + B1_Mm SINE Alu 2 147 0 7 1182 584 265 139 40 chr9 78313435 78313608 -45762564 + B3A SINE B2 2 191 -7 7 1182 533 270 67 30 chr9 78313994 78314158 -45762014 - B3A SINE B2 0 198 29 7 1182 625 59 0 0 chr9 78314168 78314253 -45761919 - B1_Mur4 SINE Alu 0 150 66 7 1182 215 69 0 0 chr9 78314252 78314281 -45761891 - B1_Mm SINE Alu -55 92 64 7 1182 259 189 0 0 chr9 78314255 78314308 -45761864 - ID_B1 SINE B4 -26 198 146 7 1182 384 123 0 15 chr9 78314278 78314344 -45761828 - B1_Mus2 SINE Alu -23 124 60 7 1182 612 0 0 0 chr9 78314385 78314453 -45761719 + (TGG)n Simple_repeat Simple_repeat 1 68 0 7 1182 520 287 40 13 chr9 78314458 78314610 -45761562 - ID_B1 SINE B4 -1 223 68 7 1182 295 282 14 0 chr9 78314612 78314683 -45761489 + MTE2b LTR MaLR 1 72 -307 7 1182 228 306 0 46 chr9 78314660 78314725 -45761447 - ID SINE ID -162 62 1 7 1182 579 304 166 18 chr9 78314944 78315180 -45760992 - MTEb LTR MaLR -57 322 45 7 1182 1521 53 5 0 chr9 78315180 78315368 -45760804 - B2_Mm1t SINE B2 -3 190 2 7 1182 579 304 166 18 chr9 78315368 78315409 -45760763 - MTEb LTR MaLR -335 44 4 7 1182 214 313 0 56 chr9 78315454 78315525 -45760647 + PB1D10 SINE Alu 2 68 -49 7 1182 1575 42 5 0 chr9 78315535 78315726 -45760446 - B2_Mm1a SINE B2 0 193 2 7 1182 823 187 0 41 chr9 78315765 78315910 -45760262 + B1_Mur2 SINE Alu 1 139 -10 7 1182 1318 174 155 14 chr9 78315910 78316115 -45760057 - ORR1C2 LTR MaLR -45 339 91 7 1182 1640 26 21 0 chr9 78316115 78316304 -45759868 - B2_Mm1t SINE B2 0 193 1 7 1182 1318 188 140 20 chr9 78316304 78316410 -45759762 - ORR1C2 LTR MaLR -294 90 1 7 1182 529 280 24 0 chr9 78316416 78316541 -45759631 - RSINE1 SINE B4 -1 164 37 7 1182 322 218 24 60 chr9 78316560 78316643 -45759529 - ID_B1 SINE B4 -5 219 140 7 1182 732 145 53 0 chr9 78316704 78316835 -45759337 + B1_Mur3 SINE Alu 7 144 -5 7 1182 229 272 63 95 chr9 78316722 78316848 -45759324 + B4A SINE B4 115 236 -56 7 1182 559 235 0 25 chr9 78316992 78317110 -45759062 - B3A SINE B2 -81 117 3 7 1182 244 296 92 0 chr9 78317138 78317236 -45758936 + PB1D10 SINE Alu 2 108 -9 7 1182 1168 68 0 0 chr9 78317404 78317550 -45758622 - B1_Mus1 SINE Alu -2 146 1 7 1182 293 217 14 42 chr9 78317712 78317784 -45758388 + ID4 SINE ID 7 76 -7 7 1182 929 58 16 0 chr9 78317888 78318009 -45758163 - B1_Mus1 SINE Alu 0 148 26 7 1182 242 315 11 33 chr9 78318056 78318148 -45758024 + ID_B1 SINE B4 82 171 -53 7 1182 452 195 13 0 chr9 78318212 78318289 -45757883 + ID_B1 SINE B4 147 224 0 7 1182 315 255 138 0 chr9 78318299 78318393 -45757779 + MIRc SINE MIR 157 263 -5 7 1182 533 200 0 43 chr9 78318671 78318786 -45757386 + B3 SINE B2 9 118 -98 7 1182 1412 50 66 0 chr9 78318896 78319077 -45757095 + B2_Mm1a SINE B2 1 193 0 7 1182 1242 48 0 0 chr9 78319097 78319244 -45756928 + B1_Mm SINE Alu 1 147 0 7 1182 863 188 101 35 chr9 78319316 78319515 -45756657 + B3 SINE B2 4 215 -1 7 1182 21 36 0 0 chr9 78319595 78319623 -45756549 + AT_rich Low_complexity Low_complexity 1 28 0 7 1182 1060 86 0 23 chr9 78319690 78319904 -45756268 + (TG)n Simple_repeat Simple_repeat 1 209 0 7 1182 434 257 35 9 chr9 78320315 78320429 -45755743 - Lx8 LINE L1 -495 6978 6862 7 1182 213 94 0 0 chr9 78320443 78320475 -45755697 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 7 1182 751 171 113 83 chr9 78320483 78320687 -45755485 - B3 SINE B2 -5 211 2 7 1182 419 141 128 0 chr9 78320757 78320835 -45755337 - PB1D10 SINE Alu -17 100 13 7 1182 257 270 32 0 chr9 78320780 78320843 -45755329 - B4A SINE B4 -140 152 88 7 1182 1054 99 93 0 chr9 78320877 78321038 -45755134 + B2_Mm2 SINE B2 1 176 -19 7 1182 935 233 15 15 chr9 78321147 78321352 -45754820 - B3 SINE B2 -10 206 2 7 1182 346 282 13 121 chr9 78321369 78321518 -45754654 + FAM SINE Alu 137 269 -42 7 1182 507 162 152 0 chr9 78321770 78321875 -45754297 - URR1A DNA MER1_type -27 199 79 7 1182 322 302 18 65 chr9 78322135 78322257 -45753915 + ID_B1 SINE B4 65 176 -48 7 1182 425 286 9 19 chr9 78322169 78322276 -45753896 + PB1D10 SINE Alu 9 114 -3 7 1182 981 42 0 0 chr9 78322430 78322549 -45753623 - B1_Mus1 SINE Alu 0 148 30 7 1182 899 113 217 12 chr9 78323386 78323516 -45752656 + B2_Mm2 SINE B2 2 165 -30 7 1182 1566 37 16 0 chr9 78323516 78323705 -45752467 - B2_Mm1t SINE B2 -1 192 1 7 1182 899 113 217 12 chr9 78323705 78323735 -45752437 + B2_Mm2 SINE B2 166 195 0 7 1182 352 288 0 0 chr9 78323739 78323819 -45752353 - PB1 SINE Alu -24 103 24 7 1182 310 300 0 0 chr9 78323873 78323943 -45752229 + ID_B1 SINE B4 155 224 0 7 1182 1333 69 46 0 chr9 78323946 78324119 -45752053 + B2_Mm2 SINE B2 1 181 -14 7 1182 702 203 30 0 chr9 78324164 78324297 -45751875 + B1_Mus2 SINE Alu 6 142 -5 7 1182 281 269 15 15 chr9 78324346 78324414 -45751758 + PB1D10 SINE Alu 17 84 -33 7 1182 240 271 42 28 chr9 78324431 78324503 -45751669 + ID4_ SINE ID 2 74 -9 7 1182 285 217 0 16 chr9 78325069 78325130 -45751042 + ID2 SINE ID 11 70 -13 7 1182 515 164 122 8 chr9 78330448 78330571 -45745601 - B1_Mur2 SINE Alu 0 149 13 7 1182 523 254 26 52 chr9 78331085 78331239 -45744933 - RSINE1 SINE B4 -5 160 11 7 1182 548 213 25 150 chr9 78331250 78331338 -45744834 - ID_B1 SINE B4 0 224 157 7 1182 1211 61 0 0 chr9 78331338 78331485 -45744687 - B1_Mus2 SINE Alu 0 147 1 7 1182 548 213 25 150 chr9 78331485 78331556 -45744616 - ID_B1 SINE B4 -68 156 85 7 1182 856 163 0 21 chr9 78332317 78332461 -45743711 - B1_Mur3 SINE Alu -7 142 2 7 1182 694 234 46 78 chr9 78332586 78332804 -45743368 - B3 SINE B2 -4 212 2 7 1182 581 190 83 0 chr9 78332892 78333013 -45743159 - B1F2 SINE Alu 0 149 19 7 1182 286 154 57 19 chr9 78333043 78333096 -45743076 - PB1D7 SINE Alu 0 120 66 7 1182 613 220 174 48 chr9 78333049 78333216 -45742956 - ID_B1 SINE B4 -5 219 32 7 1182 1174 90 54 0 chr9 78333289 78333455 -45742717 - B2_Mm1t SINE B2 -17 176 2 7 1182 586 197 72 82 chr9 78333528 78333722 -45742450 + B3 SINE B2 25 216 0 7 1182 21 36 0 0 chr9 78333728 78333756 -45742416 + AT_rich Low_complexity Low_complexity 1 28 0 7 1182 413 205 103 41 chr9 78333780 78333947 -45742225 + B3A SINE B2 2 186 -7 7 1182 391 158 0 32 chr9 78334049 78334173 -45741999 + (CAGAGA)n Simple_repeat Simple_repeat 1 120 0 7 1182 596 206 99 0 chr9 78334205 78334336 -45741836 + B1_Mur2 SINE Alu 6 149 0 7 1182 740 234 48 44 chr9 78334340 78334546 -45741626 + B3 SINE B2 1 207 -9 7 1182 1192 75 0 0 chr9 78334551 78334698 -45741474 + B1_Mus2 SINE Alu 1 147 0 7 1182 332 128 13 0 chr9 78334700 78334778 -45741394 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 7 1182 212 328 0 0 chr9 78334903 78334961 -45741211 + ID_B1 SINE B4 78 135 -89 7 1182 1170 95 0 0 chr9 78335092 78335239 -45740933 + B1_Mus2 SINE Alu 1 147 0 7 1182 1085 157 5 48 chr9 78335306 78335514 -45740658 - RMER10B LTR ERVL -6 392 194 7 1182 1050 191 26 49 chr9 78335502 78335577 -45740595 - RMER10B LTR ERVL -133 265 186 7 1182 183 42 0 0 chr9 78335577 78335601 -45740571 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1182 1050 191 26 49 chr9 78335601 78335712 -45740460 - RMER10B LTR ERVL -213 185 79 7 1182 2885 41 3 17 chr9 78335712 78336063 -45740109 - ORR1A0 LTR MaLR 0 346 1 7 1182 1050 191 26 49 chr9 78336063 78336140 -45740032 - RMER10B LTR ERVL -320 78 8 7 1182 1232 42 0 0 chr9 78336250 78336393 -45739779 + B1_Mm SINE Alu 5 147 0 7 1182 269 300 140 35 chr9 78336489 78336603 -45739569 - PB1 SINE Alu -1 126 1 7 1182 228 67 0 0 chr9 78336993 78337023 -45739149 + (TCCCC)n Simple_repeat Simple_repeat 3 32 0 7 1182 213 316 44 88 chr9 78337373 78337599 -45738573 + L4 LINE RTE 523 738 -1291 7 1182 411 232 61 31 chr9 78337656 78337754 -45738418 - PB1D10 SINE Alu -12 105 5 7 1182 221 228 34 34 chr9 78337783 78337842 -45738330 + ID4 SINE ID 8 66 -17 7 1182 303 295 11 11 chr9 78337887 78337976 -45738196 - ID_B1 SINE B4 -21 203 115 7 1182 1064 101 0 20 chr9 78338012 78338163 -45738009 - B1_Mus1 SINE Alu 0 148 1 7 1182 1628 47 0 0 chr9 78338190 78338383 -45737789 + B2_Mm1a SINE B2 1 193 0 7 1182 493 228 164 8 chr9 78338404 78338532 -45737640 + B1_Mur2 SINE Alu 2 149 0 8 1182 1168 76 0 0 chr9 78338868 78339012 -45737160 + B1_Mus2 SINE Alu 2 145 -2 8 1182 1347 88 11 5 chr9 78339474 78339658 -45736514 - B2_Mm1t SINE B2 -6 187 3 8 1182 216 312 12 59 chr9 78340057 78340142 -45736030 - ID4_ SINE ID -1 82 2 8 1182 273 304 245 0 chr9 78340190 78340292 -45735880 - B1F1 SINE Alu -18 131 5 8 1182 232 252 119 93 chr9 78340214 78340332 -45735840 - MT2B LTR ERVL -346 255 135 8 1182 225 153 266 89 chr9 78340450 78340529 -45735643 - MurSatRep1 Unknown Unknown -1887 250 158 8 1182 658 216 36 7 chr9 78340540 78340680 -45735492 - B1_Mus2 SINE Alu -2 145 2 8 1182 777 161 63 42 chr9 78340692 78340835 -45735337 - B1_Mus2 SINE Alu 0 147 2 8 1182 186 97 0 0 chr9 78340841 78340853 -45735319 + (T)n Simple_repeat Simple_repeat 1 12 0 8 1182 860 80 176 0 chr9 78340853 78340978 -45735194 - B1_Mus2 SINE Alu 0 147 1 8 1182 186 97 0 0 chr9 78340978 78340996 -45735176 + (T)n Simple_repeat Simple_repeat 1 18 0 8 1182 1235 41 0 26 chr9 78341294 78341445 -45734727 - B1_Mus2 SINE Alu 0 147 1 8 1182 467 230 155 23 chr9 78341508 78341637 -45734535 + B1_Mur3 SINE Alu 3 148 -1 8 1182 1415 66 33 0 chr9 78341821 78342003 -45734169 + B2_Mm1a SINE B2 1 188 -5 8 1182 261 0 0 0 chr9 78342146 78342175 -45733997 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1182 819 31 0 0 chr9 78342175 78342273 -45733899 - B1_Mm SINE Alu -8 139 42 8 1182 792 200 59 37 chr9 78342273 78342460 -45733712 + B3 SINE B2 14 204 -12 8 1182 307 319 0 32 chr9 78342491 78342585 -45733587 + B1F1 SINE Alu 1 91 -58 8 1182 603 200 16 50 chr9 78342598 78342719 -45733453 + PB1D9 SINE Alu 2 118 -2 8 1182 201 74 0 0 chr9 78342733 78342760 -45733412 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 1182 410 328 32 8 chr9 78342796 78342922 -45733250 + RSINE1 SINE B4 11 139 -26 8 1182 629 221 0 6 chr9 78342946 78343123 -45733049 + (TG)n Simple_repeat Simple_repeat 2 177 0 8 1182 1371 199 107 114 chr9 78343152 78343266 -45732906 + MTD LTR MaLR 3 114 -305 8 1182 623 25 0 24 chr9 78343266 78343348 -45732824 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 8 1182 1371 199 107 114 chr9 78343348 78343653 -45732519 + MTD LTR MaLR 115 419 0 8 1182 10996 63 11 23 chr9 78344239 78345105 -45731067 - L1_Mur1 LINE L1 -348 5538 4687 8 1182 1329 73 78 0 chr9 78345105 78345123 -45731049 - B2_Mm1t SINE B2 0 193 176 8 1182 279 0 0 0 chr9 78345123 78345154 -45731018 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8 1182 1329 73 78 0 chr9 78345154 78345314 -45730858 - B2_Mm1t SINE B2 -18 175 2 8 1182 10996 63 11 23 chr9 78345314 78345943 -45730229 - L1_Mur1 LINE L1 -1200 4686 4061 8 1182 255 207 0 155 chr9 78346147 78346165 -45730007 - ID_B1 SINE B4 -1 223 182 8 1182 531 31 0 0 chr9 78346165 78346229 -45729943 - B1_Mur4 SINE Alu -10 140 77 8 1182 255 207 0 155 chr9 78346229 78346244 -45729928 - ID_B1 SINE B4 -1 181 142 8 1182 254 252 117 0 chr9 78346316 78346419 -45729753 + PB1D10 SINE Alu 1 115 -2 8 1182 291 185 0 120 chr9 78346542 78346634 -45729538 + ID_B1 SINE B4 90 170 -54 8 1182 274 258 95 76 chr9 78346634 78346647 -45729525 + PB1D10 SINE Alu 9 115 -2 8 1182 297 279 10 61 chr9 78346654 78346753 -45729419 + B4 SINE B4 5 99 -66 8 1182 397 241 147 82 chr9 78346779 78346821 -45729351 - MTD LTR MaLR 0 419 384 8 1182 279 0 0 0 chr9 78346821 78346852 -45729320 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1182 1075 36 28 28 chr9 78346852 78346995 -45729177 - B1_Mus1 SINE Alu -3 145 3 8 1182 397 241 147 82 chr9 78346995 78347182 -45728990 - MTD LTR MaLR -36 383 175 8 1182 480 173 0 12 chr9 78347145 78347227 -45728945 - B1_Mur4 SINE Alu -64 86 6 8 1182 645 289 38 62 chr9 78347228 78347438 -45728734 - MTD LTR MaLR -213 206 2 8 1182 21 36 0 0 chr9 78347504 78347532 -45728640 + AT_rich Low_complexity Low_complexity 1 28 0 8 1182 216 0 0 0 chr9 78347658 78347682 -45728490 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 1182 1462 104 0 0 chr9 78347694 78347895 -45728277 - MT2C_Mm LTR ERVL -274 201 1 8 1182 400 200 88 35 chr9 78347803 78347917 -45728255 - ORR1A3-int LTR MaLR -1258 705 586 8 1182 245 308 21 52 chr9 78347919 78348015 -45728157 - RLTR25B LTR ERVK -490 538 446 8 1182 443 233 22 22 chr9 78347954 78348046 -45728126 - B1_Mur2 SINE Alu -44 105 14 8 1182 332 256 11 79 chr9 78347977 78348066 -45728106 - MT2B LTR ERVL -362 239 157 8 1182 1126 109 97 6 chr9 78348068 78348244 -45727928 - B2_Mm2 SINE B2 -2 193 2 8 1182 232 268 0 0 chr9 78348295 78348351 -45727821 - B1F SINE Alu -92 57 2 8 1182 270 272 107 46 chr9 78348519 78348650 -45727522 - B1F1 SINE Alu -1 148 10 8 1182 429 20 0 0 chr9 78348872 78348922 -45727250 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1182 207 0 0 0 chr9 78348922 78348944 -45727228 + (TAGG)n Simple_repeat Simple_repeat 1 23 0 8 1182 823 159 72 0 chr9 78348949 78349087 -45727085 - B1_Mur4 SINE Alu -1 149 2 8 1182 553 179 56 69 chr9 78349093 78349237 -45726935 - B3 SINE B2 -5 211 70 8 1182 313 230 154 34 chr9 78349352 78349469 -45726703 + B4A SINE B4 14 144 -148 8 1182 1375 60 39 0 chr9 78349469 78349651 -45726521 - B2_Mm2 SINE B2 -5 190 2 8 1182 1174 201 68 71 chr9 78349651 78349945 -45726227 + Lx9 LINE L1 6863 7155 -489 8 1182 235 128 0 0 chr9 78349946 78349985 -45726187 + B1_Mur2 SINE Alu 111 149 0 8 1182 542 156 25 76 chr9 78350034 78350152 -45726020 - PB1D9 SINE Alu -8 112 1 8 1182 529 285 36 96 chr9 78350238 78350405 -45725767 - B3A SINE B2 0 198 42 8 1182 402 221 18 9 chr9 78350484 78350598 -45725574 - Lx8 LINE L1 -2 7471 7357 8 1182 349 257 54 0 chr9 78350616 78350690 -45725482 + B3A SINE B2 74 151 -47 8 1182 21 0 0 0 chr9 78350758 78350779 -45725393 + GC_rich Low_complexity Low_complexity 1 21 0 8 1182 317 232 0 39 chr9 78351577 78351707 -45724465 + C-rich Low_complexity Low_complexity 2 126 0 8 1182 1513 53 37 0 chr9 78351866 78352054 -45724118 - B2_Mm2 SINE B2 0 195 1 8 1182 486 238 0 81 chr9 78352104 78352264 -45723908 - B1_Mur3 SINE Alu -1 148 2 8 1182 319 191 0 0 chr9 78352509 78352556 -45723616 + ID_B1 SINE B4 84 130 -94 8 1182 1130 260 68 12 chr9 78352563 78352886 -45723286 + Lx8 LINE L1 7010 7350 -123 8 1182 851 200 66 16 chr9 78352896 78353079 -45723093 + B3 SINE B2 15 206 -10 8 1182 255 325 44 6 chr9 78353118 78353276 -45722896 + (GGGTG)n Simple_repeat Simple_repeat 3 166 0 8 1182 1241 99 5 25 chr9 78353328 78353524 -45722648 + B2_Mm1a SINE B2 1 192 -1 8 1182 22 0 0 0 chr9 78353524 78353546 -45722626 + AT_rich Low_complexity Low_complexity 1 22 0 8 1182 1215 49 0 0 chr9 78354780 78354923 -45721249 - B1_Mus2 SINE Alu 0 147 5 8 1182 915 178 0 0 chr9 78354937 78355111 -45721061 + CT-rich Low_complexity Low_complexity 3 176 0 8 1182 370 176 12 12 chr9 78355128 78355214 -45720958 + C-rich Low_complexity Low_complexity 1 86 0 8 1182 1105 85 0 0 chr9 78355240 78355381 -45720791 - B1_Mus1 SINE Alu -6 142 2 8 1182 232 306 181 0 chr9 78355408 78355480 -45720692 + ID_B1 SINE B4 83 167 -57 8 1182 396 198 176 0 chr9 78355416 78355507 -45720665 + PB1D10 SINE Alu 10 116 -1 8 1182 821 199 0 14 chr9 78355527 78355675 -45720497 + B1_Mus1 SINE Alu 1 146 -2 8 1182 261 0 0 0 chr9 78355686 78355715 -45720457 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1182 184 156 21 32 chr9 78355727 78355820 -45720352 + A-rich Low_complexity Low_complexity 3 94 0 8 1182 488 298 40 34 chr9 78356478 78356655 -45719517 - B3A SINE B2 -18 180 3 8 1182 583 277 0 0 chr9 78356711 78356859 -45719313 - B1F SINE Alu -1 148 1 8 1182 825 197 7 0 chr9 78356962 78357099 -45719073 - B1_Mur2 SINE Alu -10 139 2 8 1182 554 250 238 0 chr9 78357136 78357296 -45718876 + B3 SINE B2 5 202 -14 8 1182 390 21 0 0 chr9 78357299 78357346 -45718826 + (CATA)n Simple_repeat Simple_repeat 2 48 0 8 1182 625 257 21 0 chr9 78357352 78357496 -45718676 + B1_Mur1 SINE Alu 2 148 -1 8 1182 276 213 0 0 chr9 78357548 78357595 -45718577 - RSINE1 SINE B4 -108 57 11 8 1182 1671 26 0 0 chr9 78357667 78357856 -45718316 - B2_Mm1a SINE B2 -3 190 2 8 1182 333 106 371 19 chr9 78357865 78357970 -45718202 - B2_Mm2 SINE B2 -7 188 47 8 1182 1060 108 71 24 chr9 78358032 78358202 -45717970 - B2_Mm1t SINE B2 -14 179 2 8 1182 24 32 0 0 chr9 78358226 78358257 -45717915 + AT_rich Low_complexity Low_complexity 1 31 0 8 1182 629 262 66 41 chr9 78358257 78358500 -45717672 - Lx8 LINE L1 -3 7470 7222 8 1182 1254 93 35 0 chr9 78358500 78358672 -45717500 + B2_Mm1t SINE B2 2 179 -14 8 1182 599 76 246 25 chr9 78358698 78358820 -45717352 + B2_Mm2 SINE B2 47 195 0 8 1182 490 229 29 0 chr9 78358820 78358925 -45717247 - Lx8 LINE L1 -240 7233 7126 8 1182 189 0 0 0 chr9 78358932 78358953 -45717219 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1182 1194 68 0 0 chr9 78358956 78359104 -45717068 - B1_Mus1 SINE Alu 0 148 1 8 1182 21 0 0 0 chr9 78359109 78359130 -45717042 + AT_rich Low_complexity Low_complexity 1 21 0 8 1182 713 234 349 27 chr9 78359172 78359187 -45716985 - Lx8 LINE L1 -1 7472 7462 8 1182 1634 31 0 20 chr9 78359187 78359383 -45716789 - B2_Mm1a SINE B2 0 193 2 8 1182 713 234 349 27 chr9 78359383 78359697 -45716475 - Lx8 LINE L1 -12 7461 7037 8 1182 1263 268 99 101 chr9 78359714 78360311 -45715861 + Lx8 LINE L1 6584 7179 -294 8 1182 483 295 106 27 chr9 78360399 78360587 -45715585 + RMER15 LTR ERVL 373 575 0 8 1182 2307 43 67 67 chr9 78360713 78361040 -45715132 + ORR1A2 LTR MaLR 1 327 0 8 1182 189 0 0 0 chr9 78361115 78361136 -45715036 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 1182 392 215 35 0 chr9 78362150 78362235 -45713937 - PB1D7 SINE Alu -8 119 23 9 1182 1449 81 16 0 chr9 78362263 78362448 -45713724 + B2_Mm2 SINE B2 1 188 -7 9 1182 308 280 45 27 chr9 78362739 78362849 -45713323 + MER33 DNA MER1_type 2 113 -211 9 1182 596 121 22 0 chr9 78363250 78363341 -45712831 - B1_Mur2 SINE Alu -8 141 49 9 1182 193 127 0 52 chr9 78363518 78363562 -45712610 + T-rich Low_complexity Low_complexity 15 57 0 9 1182 1167 68 7 0 chr9 78363562 78363708 -45712464 - B1_Mus1 SINE Alu 0 148 2 9 1182 193 127 0 52 chr9 78363708 78363721 -45712451 + T-rich Low_complexity Low_complexity 3 14 0 9 1182 848 204 0 0 chr9 78363755 78363892 -45712280 + B1_Mur2 SINE Alu 1 137 -12 9 1182 284 0 28 0 chr9 78363892 78363928 -45712244 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 9 1182 407 239 43 123 chr9 78364213 78364310 -45711862 + B1F SINE Alu 1 101 -48 9 1182 1051 121 91 11 chr9 78364310 78364486 -45711686 + B2_Mm2 SINE B2 2 191 -4 9 1182 407 239 43 123 chr9 78364486 78364550 -45711622 + B1F SINE Alu 102 149 0 9 1182 209 155 0 65 chr9 78364561 78364623 -45711549 + A-rich Low_complexity Low_complexity 4 61 0 9 1182 444 275 42 0 chr9 78364705 78364825 -45711347 - ID_B1 SINE B4 -21 203 79 9 1182 334 293 103 34 chr9 78364990 78365223 -45710949 + RMER15 LTR ERVL 275 523 -52 9 1182 1624 57 0 0 chr9 78365263 78365455 -45710717 + B2_Mm1t SINE B2 1 192 -1 9 1182 290 337 11 0 chr9 78365678 78365773 -45710399 + MIR SINE MIR 117 212 -50 9 1182 1249 48 0 0 chr9 78365791 78365938 -45710234 - B1_Mus2 SINE Alu 0 147 1 9 1182 652 207 21 28 chr9 78366003 78366147 -45710025 + B1_Mur1 SINE Alu 2 144 -5 9 1182 214 329 27 0 chr9 78366295 78366368 -45709804 + B1_Mus1 SINE Alu 1 75 -73 9 1182 268 169 14 27 chr9 78366468 78366541 -45709631 + C-rich Low_complexity Low_complexity 6 77 0 9 1182 228 143 0 0 chr9 78366627 78366669 -45709503 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1182 681 171 9 32 chr9 78366682 78366824 -45709348 + B1_Mus1 SINE Alu 9 148 -2 9 1182 1076 154 33 6 chr9 78366829 78367012 -45709160 - MTC LTR MaLR -228 193 6 9 1182 1164 63 21 0 chr9 78367013 78367156 -45709016 + B1_Mus2 SINE Alu 1 146 -1 9 1182 288 0 0 0 chr9 78367157 78367189 -45708983 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9 1182 1083 101 12 12 chr9 78367196 78367357 -45708815 + B2_Mm1t SINE B2 19 179 -14 9 1182 282 84 404 40 chr9 78367402 78367501 -45708671 + B2_Mm2 SINE B2 60 194 -1 9 1182 28 0 0 0 chr9 78367588 78367616 -45708556 + AT_rich Low_complexity Low_complexity 1 28 0 9 1182 1055 61 30 0 chr9 78367670 78367802 -45708370 + B1_Mm SINE Alu 2 137 -10 9 1182 398 20 20 0 chr9 78367802 78367853 -45708319 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 9 1182 5866 279 53 61 chr9 78369332 78369941 -45706231 + RodERV21-int LTR ERV1 718 1348 -3643 9 1182 1735 21 0 0 chr9 78369941 78370133 -45706039 - B2_Mm1a SINE B2 0 193 2 9 1182 5866 279 53 61 chr9 78370133 78370172 -45706000 + RodERV21-int LTR ERV1 1349 1381 -3610 9 1182 269 26 0 26 chr9 78370172 78370211 -45705961 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9 1182 1132 65 0 0 chr9 78370211 78370349 -45705823 - B1_Mus1 SINE Alu -10 138 1 9 1182 5866 279 53 61 chr9 78370349 78371716 -45704456 + RodERV21-int LTR ERV1 1382 2716 -2275 9 1182 1012 65 0 0 chr9 78371859 78371983 -45704189 + B1_Mus2 SINE Alu 5 128 -19 9 1182 627 301 48 57 chr9 78371983 78372423 -45703749 + RodERV21-int LTR ERV1 3639 4074 -3017 9 1182 946 247 63 27 chr9 78372718 78373051 -45703121 + RodERV21-int LTR ERV1 4449 4793 -198 9 1182 874 63 158 0 chr9 78373256 78373383 -45702789 - B1_Mm SINE Alu 0 147 1 9 1182 246 260 26 13 chr9 78373597 78373675 -45702497 + CT-rich Low_complexity Low_complexity 2 80 0 9 1182 538 182 10 0 chr9 78373754 78373853 -45702319 - B1_Mur4 SINE Alu -37 113 14 9 1182 354 275 96 30 chr9 78373860 78373995 -45702177 - B1F SINE Alu -5 144 1 9 1182 232 297 50 67 chr9 78374250 78374369 -45701803 - PB1D10 SINE Alu 0 117 1 9 1182 307 200 0 0 chr9 78374398 78374448 -45701724 - ID_B1 SINE B4 -38 186 137 9 1182 512 228 89 0 chr9 78374468 78374591 -45701581 - B1_Mur2 SINE Alu -3 146 13 9 1182 472 288 48 0 chr9 78375624 78375749 -45700423 + RSINE1 SINE B4 3 133 -32 9 1182 22 35 0 0 chr9 78375752 78375781 -45700391 + AT_rich Low_complexity Low_complexity 1 29 0 9 1182 537 237 75 22 chr9 78375804 78375938 -45700234 + ID_B1 SINE B4 84 224 0 9 1182 311 314 29 0 chr9 78376302 78376407 -45699765 + PB1D10 SINE Alu 10 117 0 9 1182 1173 41 7 7 chr9 78376655 78376802 -45699370 - B1_Mus2 SINE Alu 0 147 1 9 1182 236 226 32 0 chr9 78377044 78377106 -45699066 + L1MB8 LINE L1 6115 6178 0 9 1182 1270 20 0 7 chr9 78377150 78377297 -45698875 - B1_Mm SINE Alu 0 147 2 9 1182 453 198 55 0 chr9 78377414 78377505 -45698667 - ORR1D1 LTR MaLR -278 96 1 9 1182 502 252 0 109 chr9 78377543 78377699 -45698473 - B1_Mur1 SINE Alu 0 149 11 9 1182 250 96 211 0 chr9 78377750 78377802 -45698370 - B2_Mm1t SINE B2 -3 190 128 9 1182 1199 103 23 0 chr9 78377838 78378012 -45698160 - B2_Mm1t SINE B2 -15 178 1 9 1182 216 358 64 0 chr9 78378138 78378247 -45697925 - B4 SINE B4 -175 117 2 9 1182 297 214 143 0 chr9 78378259 78378357 -45697815 - PB1D9 SINE Alu 0 120 9 9 1182 26 0 0 0 chr9 78378427 78378453 -45697719 + AT_rich Low_complexity Low_complexity 1 26 0 9 1182 632 45 34 11 chr9 78378455 78378544 -45697628 - B1_Mus2 SINE Alu 0 147 57 9 1182 551 205 25 33 chr9 78378606 78378727 -45697445 + ID_B1 SINE B4 103 222 -2 9 1182 185 163 20 0 chr9 78378727 78378776 -45697396 + A-rich Low_complexity Low_complexity 1 50 0 9 1182 453 256 26 0 chr9 78379034 78379151 -45697021 + B1F2 SINE Alu 29 148 -1 9 1182 334 268 75 52 chr9 78379166 78379300 -45696872 + B1F SINE Alu 5 141 -8 9 1182 187 321 161 0 chr9 78379365 78379446 -45696726 - L3 LINE CR1 -1162 3327 3234 9 1182 324 236 65 86 chr9 78379552 78379563 -45696609 + B1F2 SINE Alu 14 144 0 9 1182 372 241 49 89 chr9 78379563 78379686 -45696486 + ID_B1 SINE B4 104 221 -3 9 1182 276 274 48 0 chr9 78379847 78379909 -45696263 - ID4_ SINE ID 0 83 19 9 1182 398 270 50 34 chr9 78380120 78380239 -45695933 - B1F SINE Alu 0 149 29 9 1182 418 325 23 16 chr9 78380132 78380260 -45695912 - ID_B1 SINE B4 -8 216 88 9 1182 1442 66 39 0 chr9 78380765 78380946 -45695226 - B2_Mm2 SINE B2 -7 188 1 9 1183 431 242 111 16 chr9 78381643 78381769 -45694403 - ID_B1 SINE B4 -2 222 85 9 1183 675 236 0 7 chr9 78382115 78382264 -45693908 + B1F SINE Alu 1 148 -1 9 1183 209 379 9 28 chr9 78382288 78382394 -45693778 + L2a LINE L2 3302 3405 -21 9 1183 403 311 19 126 chr9 78382394 78382600 -45693572 + ID_B1 SINE B4 11 194 -30 9 1183 286 340 28 0 chr9 78382513 78382619 -45693553 + B1F2 SINE Alu 27 135 -14 9 1183 434 154 26 0 chr9 78382701 78382779 -45693393 - ID4 SINE ID -2 81 2 9 1183 180 0 0 0 chr9 78382813 78382833 -45693339 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 9 1183 766 161 32 0 chr9 78383062 78383186 -45692986 - B3 SINE B2 -88 128 1 9 1183 204 40 0 0 chr9 78383356 78383381 -45692791 + (TTA)n Simple_repeat Simple_repeat 3 27 0 9 1183 420 255 20 39 chr9 78383507 78383609 -45692563 - PB1D10 SINE Alu -7 110 11 9 1183 354 45 0 0 chr9 78383627 78383671 -45692501 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1183 499 193 211 0 chr9 78383671 78383780 -45692392 - B1_Mus2 SINE Alu -14 133 2 9 1183 222 37 0 0 chr9 78383854 78383881 -45692291 + (TCC)n Simple_repeat Simple_repeat 1 27 0 9 1183 1003 186 30 5 chr9 78384102 78384302 -45691870 + B3 SINE B2 12 216 0 9 1183 24 53 0 0 chr9 78384363 78384401 -45691771 + AT_rich Low_complexity Low_complexity 1 38 0 9 1183 680 163 108 8 chr9 78384509 78384639 -45691533 - B1_Mur3 SINE Alu 0 149 7 9 1183 198 0 0 0 chr9 78385427 78385449 -45690723 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1183 28 0 0 0 chr9 78385566 78385594 -45690578 + AT_rich Low_complexity Low_complexity 1 28 0 9 1183 1513 67 0 5 chr9 78385611 78385806 -45690366 - B2_Mm2 SINE B2 0 195 2 9 1183 259 250 145 0 chr9 78386960 78387048 -45689124 - ID4_ SINE ID -42 110 8 9 1183 227 179 0 0 chr9 78387110 78387149 -45689023 + PB1D9 SINE Alu 1 39 -81 9 1183 891 104 67 7 chr9 78387244 78387379 -45688793 - B1_Mus2 SINE Alu -2 145 3 9 1183 421 171 69 142 chr9 78387414 78387618 -45688554 - B2_Mm2 SINE B2 -6 189 1 9 1183 496 193 145 69 chr9 78387662 78387807 -45688365 - RSINE1 SINE B4 0 165 10 9 1183 1228 61 0 0 chr9 78387839 78387987 -45688185 - B1_Mus1 SINE Alu 0 148 1 9 1183 332 280 32 148 chr9 78388103 78388258 -45687914 - ID_B1 SINE B4 -85 139 3 9 1183 443 272 36 129 chr9 78388398 78388622 -45687550 + B3 SINE B2 7 209 -7 9 1183 634 183 112 22 chr9 78388945 78389079 -45687093 - B1_Mur4 SINE Alu -1 149 4 9 1183 309 321 22 37 chr9 78389079 78389111 -45687061 - ID SINE ID -142 82 53 9 1183 1359 45 89 6 chr9 78389218 78389398 -45686774 + B2_Mm2 SINE B2 1 195 0 9 1183 394 272 39 23 chr9 78389637 78389765 -45686407 + ID_B1 SINE B4 87 216 -8 9 1183 322 256 26 0 chr9 78389786 78389864 -45686308 + ID4 SINE ID 3 82 -1 1 1183 29 28 0 0 chr9 78389887 78389923 -45686249 + AT_rich Low_complexity Low_complexity 1 36 0 1 1183 207 100 0 0 chr9 78389923 78389953 -45686219 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1183 599 252 22 0 chr9 78389954 78390093 -45686079 - RSINE1 SINE B4 -13 152 11 1 1183 983 124 21 0 chr9 78390134 78390279 -45685893 - B1_Mur4 SINE Alu 0 150 3 1 1183 289 289 98 21 chr9 78390311 78390505 -45685667 - L1ME4a LINE L1 -38 6086 5878 1 1183 281 179 0 43 chr9 78390707 78390777 -45685395 - Lx4B LINE L1 -4 7054 6988 1 1183 481 124 0 24 chr9 78390824 78390918 -45685254 + B1F2 SINE Alu 36 120 0 1 1183 582 157 145 42 chr9 78391159 78391325 -45684847 - B2_Mm2 SINE B2 -4 191 9 1 1183 353 253 0 0 chr9 78391385 78391472 -45684700 + ID_B1 SINE B4 7 93 -131 1 1183 1596 57 0 15 chr9 78391542 78391738 -45684434 + B2_Mm1t SINE B2 1 193 0 1 1183 581 253 25 70 chr9 78391888 78392088 -45684084 - B3A SINE B2 -2 196 6 1 1183 399 263 148 60 chr9 78392166 78392306 -45683866 - B3 SINE B2 -17 199 40 1 1183 1422 73 16 5 chr9 78392306 78392499 -45683673 - B2_Mm2 SINE B2 0 195 1 1 1183 399 263 148 60 chr9 78392499 78392540 -45683632 - B3 SINE B2 -177 39 2 1 1183 287 119 115 33 chr9 78392563 78392624 -45683548 - B1F2 SINE Alu -62 87 22 1 1183 335 183 14 27 chr9 78392768 78392841 -45683331 - ID_B1 SINE B4 -7 217 146 1 1183 628 257 66 71 chr9 78392842 78393039 -45683133 - B3A SINE B2 -1 197 2 1 1183 300 70 0 0 chr9 78393080 78393123 -45683049 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1183 517 189 7 130 chr9 78393128 78393274 -45682898 - B3 SINE B2 -85 131 4 1 1183 268 342 0 0 chr9 78393286 78393359 -45682813 - ID_B1 SINE B4 -70 154 82 1 1183 430 266 18 0 chr9 78393496 78393605 -45682567 + ID_B1 SINE B4 88 198 -26 1 1183 261 146 0 0 chr9 78394624 78394672 -45681500 + (TAA)n Simple_repeat Simple_repeat 1 48 0 1 1183 280 233 51 1 chr9 78395117 78395200 -45680972 + B1F SINE Alu 18 84 -65 1 1183 281 367 13 92 chr9 78395360 78395423 -45680749 + B4A SINE B4 3 60 -232 1 1183 1239 47 0 0 chr9 78395423 78395571 -45680601 + B1_Mus1 SINE Alu 1 148 0 1 1183 281 367 13 92 chr9 78395571 78395735 -45680437 + B4A SINE B4 61 212 -80 1 1183 1176 69 0 0 chr9 78396025 78396169 -45680003 - B1_Mus2 SINE Alu -2 145 2 1 1183 254 288 0 36 chr9 78396353 78396436 -45679736 - ID4 SINE ID -3 80 1 1 1183 233 267 0 0 chr9 78396446 78396491 -45679681 + polypyrimidine Low_complexity Low_complexity 2 46 0 1 1183 1013 104 0 0 chr9 78396491 78396625 -45679547 - B1_Mus2 SINE Alu -9 138 5 1 1183 228 313 160 10 chr9 78396712 78396812 -45679360 - PB1D10 SINE Alu 0 117 3 1 1183 274 264 179 0 chr9 78397085 78397191 -45678981 - MER5A1 DNA MER1_type -1 165 41 1 1183 621 72 0 0 chr9 78397295 78397378 -45678794 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1 1183 1202 62 0 0 chr9 78397378 78397524 -45678648 - B1_Mus1 SINE Alu -2 146 1 1 1183 204 291 63 0 chr9 78397801 78397880 -45678292 + MIRc SINE MIR 164 247 -21 1 1183 230 246 14 68 chr9 78397947 78398021 -45678151 - ID_B1 SINE B4 -2 222 153 1 1183 905 133 15 0 chr9 78398152 78398287 -45677885 - B1_Mur4 SINE Alu -12 138 2 1 1183 1465 89 16 0 chr9 78398676 78398867 -45677305 + B2_Mm2 SINE B2 1 194 -1 1 1183 1198 48 7 0 chr9 78398983 78399130 -45677042 - B1_Mus1 SINE Alu 0 148 1 1 1183 462 253 0 0 chr9 78399203 78399298 -45676874 - B1F1 SINE Alu -52 97 3 1 1183 236 339 102 28 chr9 78399597 78399773 -45676399 + MIRc SINE MIR 30 218 -50 1 1183 302 263 63 0 chr9 78399876 78399971 -45676201 - ID_B1 SINE B4 -2 222 122 1 1183 207 182 0 0 chr9 78399992 78400025 -45676147 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 1 1183 374 301 26 0 chr9 78400078 78400191 -45675981 - PB1D10 SINE Alu -1 116 1 1 1183 581 319 6 0 chr9 78400191 78400268 -45675904 - ID SINE ID -143 81 4 1 1183 351 257 45 39 chr9 78400499 78400653 -45675519 + L1MB3 LINE L1 5938 6092 -91 1 1183 763 215 0 57 chr9 78401284 78401426 -45674746 + B3A SINE B2 1 138 -60 1 1183 1113 128 0 0 chr9 78401426 78401606 -45674566 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1183 763 215 0 57 chr9 78401606 78401655 -45674517 + B3A SINE B2 139 181 -17 1 1183 579 201 0 0 chr9 78401656 78401790 -45674382 + (CA)n Simple_repeat Simple_repeat 1 134 0 1 1183 874 216 11 0 chr9 78402069 78402250 -45673922 - B3 SINE B2 -6 210 28 1 1183 254 204 0 18 chr9 78402272 78402327 -45673845 - ID_B1 SINE B4 -73 151 98 1 1183 394 283 40 32 chr9 78402340 78402464 -45673708 - PB1 SINE Alu -2 125 1 1 1183 343 243 98 45 chr9 78402482 78402594 -45673578 + MER21B LTR ERV1 210 327 -536 1 1183 3478 35 0 0 chr9 78402603 78402999 -45673173 - MTA_Mm LTR MaLR 0 396 1 1 1183 9548 30 0 0 chr9 78402999 78404097 -45672075 - MTA_Mm-int LTR MaLR 0 1098 1 1 1183 3459 35 0 0 chr9 78404097 78404491 -45671681 - MTA_Mm LTR MaLR 0 396 3 1 1183 253 300 9 48 chr9 78404491 78404596 -45671576 + PB1D10 SINE Alu 4 104 -13 1 1183 408 265 30 15 chr9 78404621 78404755 -45671417 + B1F SINE Alu 12 147 -2 1 1183 986 308 47 12 chr9 78404805 78405127 -45671045 + MER21B LTR ERV1 326 658 -205 1 1183 908 142 50 0 chr9 78405635 78405776 -45670396 - B1_Mur3 SINE Alu -1 148 1 1 1183 1446 86 5 0 chr9 78405785 78405972 -45670200 - B2_Mm1t SINE B2 -4 189 2 1 1183 252 77 0 0 chr9 78406169 78406208 -45669964 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1183 468 0 0 0 chr9 78406208 78406260 -45669912 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1183 478 155 52 0 chr9 78406270 78406367 -45669805 + B1_Mur4 SINE Alu 43 144 -6 1 1183 246 227 0 0 chr9 78406368 78406434 -45669738 + A-rich Low_complexity Low_complexity 1 66 0 1 1183 480 239 45 32 chr9 78406464 78406620 -45669552 - MTC LTR MaLR -1 420 263 1 1183 364 182 16 120 chr9 78406601 78406726 -45669446 - MTC LTR MaLR -309 112 1 1 1183 223 344 11 0 chr9 78407451 78407541 -45668631 + PB1 SINE Alu 2 92 -35 1 1183 547 270 67 11 chr9 78407676 78407856 -45668316 + B3A SINE B2 1 190 -8 1 1183 24 53 0 0 chr9 78407857 78407895 -45668277 + AT_rich Low_complexity Low_complexity 1 38 0 1 1183 1452 75 16 0 chr9 78408272 78408458 -45667714 - B2_Mm2 SINE B2 -4 191 3 1 1183 318 283 141 0 chr9 78408788 78408887 -45667285 - B1F1 SINE Alu -13 136 24 1 1183 189 147 0 0 chr9 78409068 78409102 -45667070 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1183 1221 28 14 0 chr9 78409102 78409247 -45666925 - B1_Mm SINE Alu 0 147 1 1 1183 275 280 15 46 chr9 78409299 78409430 -45666742 - L1MB8 LINE L1 -121 6057 5931 1 1183 857 158 27 7 chr9 78409454 78409601 -45666571 + B1_Mur4 SINE Alu 1 150 0 1 1183 195 157 0 0 chr9 78409649 78409700 -45666472 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 1 1183 683 207 89 0 chr9 78410058 78410193 -45665979 - B1_Mus1 SINE Alu 0 148 2 1 1183 3880 36 0 0 chr9 78410234 78410683 -45665489 - L1Md_A LINE L1 -1 6581 6133 1 1183 3016 21 0 0 chr9 78410683 78411020 -45665152 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1183 10294 23 2 4 chr9 78411020 78412179 -45663993 - IAPEz-int LTR ERVK 0 6481 5326 1 1183 832 11 0 0 chr9 78412179 78412270 -45663902 - IAPEz-int LTR ERVK -1725 4756 4666 1 1183 27157 29 39 12 chr9 78412260 78415473 -45660699 - IAPEz-int LTR ERVK -3175 3306 8 1 1183 3016 21 0 0 chr9 78415473 78415810 -45660362 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1183 13061 18 9 11 chr9 78415810 78416151 -45660021 - L1Md_A LINE L1 -444 6138 5797 1 1183 1581 47 0 16 chr9 78416151 78416345 -45659827 - B2_Mm1a SINE B2 -1 192 2 1 1183 13061 12 0 5 chr9 78416345 78417715 -45658457 - L1Md_A LINE L1 -87 5796 4427 1 1183 2416 254 86 35 chr9 78417721 78418169 -45658003 - RCHARR1 DNA MER1_type -31 943 497 1 1183 841 153 44 0 chr9 78418169 78418306 -45657866 - B1_Mus1 SINE Alu -5 143 1 1 1183 2416 254 86 35 chr9 78418306 78418702 -45657470 - RCHARR1 DNA MER1_type -478 496 56 1 1183 320 42 62 0 chr9 78419106 78419154 -45657018 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 1 1183 264 179 36 0 chr9 78419203 78419259 -45656913 + PB1D10 SINE Alu 1 58 -59 1 1183 26 50 0 0 chr9 78419304 78419344 -45656828 + AT_rich Low_complexity Low_complexity 1 40 0 1 1183 430 270 85 28 chr9 78419415 78419556 -45656616 - B1F SINE Alu 0 149 1 1 1183 568 273 21 7 chr9 78419564 78419704 -45656468 - ID_B1 SINE B4 -2 222 81 1 1183 582 15 0 0 chr9 78419975 78420042 -45656130 + (CAA)n Simple_repeat Simple_repeat 1 67 0 1 1183 523 54 40 0 chr9 78420401 78420475 -45655697 + B2_Mm2 SINE B2 2 78 -117 1 1183 594 247 60 25 chr9 78420502 78420701 -45655471 - ID_B1 SINE B4 -17 207 2 1 1183 926 97 13 89 chr9 78420769 78420927 -45655245 + B1_Mus1 SINE Alu 3 148 0 1 1183 384 149 13 39 chr9 78421156 78421233 -45654939 + B3A SINE B2 1 75 -123 1 1183 2394 143 65 4 chr9 78421231 78421707 -45654465 + RLTR28 LTR ERVL 19 523 -1 1 1183 283 323 31 0 chr9 78421707 78421800 -45654372 + B3A SINE B2 68 163 -35 1 1183 447 35 0 0 chr9 78421805 78421862 -45654310 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1183 234 286 0 0 chr9 78421877 78421926 -45654246 + B3A SINE B2 59 107 -91 1 1183 183 129 0 0 chr9 78421929 78421960 -45654212 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1183 547 248 0 1 chr9 78421983 78422113 -45654059 + B1_Mur2 SINE Alu 2 130 -19 1 1183 889 110 44 0 chr9 78422983 78423119 -45653053 + B1_Mus1 SINE Alu 1 142 -6 1 1183 270 81 0 0 chr9 78423121 78423158 -45653014 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1183 269 216 93 13 chr9 78423577 78423652 -45652520 + ID4 SINE ID 3 83 0 1 1183 1028 155 193 0 chr9 78423733 78423914 -45652258 + B3 SINE B2 1 216 0 1 1183 477 118 45 34 chr9 78424177 78424265 -45651907 + B3 SINE B2 4 92 -124 1 1183 558 251 119 50 chr9 78424378 78424579 -45651593 + B3 SINE B2 2 216 0 1 1183 1204 96 90 0 chr9 78424634 78424811 -45651361 + B2_Mm2 SINE B2 2 194 -1 1 1183 1510 54 5 5 chr9 78425106 78425292 -45650880 - B2_Mm2 SINE B2 -9 186 1 1 1183 1197 244 116 0 chr9 78425358 78425694 -45650478 + MTD LTR MaLR 21 395 -24 1 1183 434 256 45 30 chr9 78425884 78426017 -45650155 + B1_Mm SINE Alu 2 136 -11 1 1183 369 0 0 0 chr9 78426170 78426211 -45649961 + (CAAAC)n Simple_repeat Simple_repeat 4 44 0 1 1183 1057 64 43 0 chr9 78426603 78426744 -45649428 - B1_Mus1 SINE Alu -1 147 1 1 1183 289 194 255 0 chr9 78426903 78427001 -45649171 + RSINE1 SINE B4 5 127 -38 1 1183 694 244 27 50 chr9 78427044 78427264 -45648908 + B3 SINE B2 1 215 -1 1 1183 198 0 0 0 chr9 78427830 78427852 -45648320 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1183 1229 190 14 41 chr9 78427870 78428161 -45648011 - RLTR18B LTR ERVK -333 283 1 1 1183 5080 195 71 52 chr9 78428165 78428542 -45647630 - RLTR18-int LTR ERVK -5 5356 4999 1 1183 1277 27 0 0 chr9 78428542 78428688 -45647484 - B1_Mm SINE Alu 0 147 2 1 1183 5080 195 71 52 chr9 78428688 78429213 -45646959 - RLTR18-int LTR ERVK -363 4998 4448 1 1183 405 0 0 0 chr9 78429213 78429258 -45646914 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1183 5080 195 71 52 chr9 78429258 78429578 -45646594 - RLTR18-int LTR ERVK -914 4447 4110 1 1183 936 136 13 13 chr9 78429582 78429719 -45646453 + B1_Mur4 SINE Alu 2 140 -10 1 1183 219 69 0 0 chr9 78429719 78429748 -45646424 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 1 1183 936 136 13 13 chr9 78429748 78429759 -45646413 + B1_Mur4 SINE Alu 141 150 0 1 1183 743 112 0 0 chr9 78429900 78429998 -45646174 + RLTR18-int LTR ERVK 4515 4612 -749 1 1183 180 0 0 0 chr9 78430349 78430369 -45645803 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 1 1183 543 155 139 2 chr9 78430369 78430483 -45645689 - B1_Mus2 SINE Alu -9 140 13 1 1183 552 121 22 0 chr9 78431066 78431157 -45645015 + PB1D9 SINE Alu 1 93 -27 1 1183 688 161 219 6 chr9 78431161 78431330 -45644842 + B3 SINE B2 2 206 -10 1 1183 650 183 0 23 chr9 78431401 78431530 -45644642 + B1_Mus2 SINE Alu 1 126 -21 1 1183 932 133 13 20 chr9 78432062 78432215 -45643957 - RLTR18-int LTR ERVK -1792 3569 3418 1 1183 214 164 14 116 chr9 78432218 78432287 -45643885 + B4A SINE B4 83 144 -148 1 1183 636 167 68 0 chr9 78432237 78432369 -45643803 + B1_Mur2 SINE Alu 9 149 0 1 1183 636 243 34 40 chr9 78432618 78432794 -45643378 - RLTR18-int LTR ERVK -5182 179 5 1 1183 1686 197 72 80 chr9 78432823 78433298 -45642874 - RLTR18B LTR ERVK 0 512 42 1 1183 213 39 0 0 chr9 78433398 78433424 -45642748 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1183 807 180 0 0 chr9 78433434 78433573 -45642599 - B1_Mus1 SINE Alu -9 139 1 1 1183 470 198 50 0 chr9 78434308 78434409 -45641763 + ID_B1 SINE B4 115 220 -4 1 1183 969 176 85 0 chr9 78434512 78434700 -45641472 - B3 SINE B2 -12 204 1 1 1183 23 0 0 0 chr9 78435097 78435120 -45641052 + GC_rich Low_complexity Low_complexity 1 23 0 1 1183 305 211 0 66 chr9 78436278 78436354 -45639818 - ID4 SINE ID -9 74 4 1 1183 1236 28 7 0 chr9 78436870 78437014 -45639158 + B1_Mus2 SINE Alu 1 145 -2 1 1183 180 0 0 0 chr9 78437014 78437034 -45639138 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1183 253 206 44 0 chr9 78437297 78437365 -45638807 - L1MD3 LINE L1 -2 7993 7923 1 1183 387 0 0 0 chr9 78437694 78437737 -45638435 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1183 504 177 204 0 chr9 78437739 78437852 -45638320 - B1_Mus1 SINE Alu -12 136 1 1 1183 413 284 134 58 chr9 78438285 78438562 -45637610 - L1MC3 LINE L1 -121 7664 7367 1 1183 967 56 104 0 chr9 78438602 78438727 -45637445 - B1_Mus1 SINE Alu -9 139 2 1 1183 196 28 26 53 chr9 78438779 78438817 -45637355 + (CCAA)n Simple_repeat Simple_repeat 2 38 0 1 1183 369 0 0 0 chr9 78438974 78439015 -45637157 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1 1183 372 284 121 70 chr9 78439016 78439330 -45636842 - L1MC3 LINE L1 -584 7201 6872 1 1183 284 289 98 16 chr9 78439346 78439469 -45636703 - B1_Mus1 SINE Alu -2 146 14 1 1183 297 96 20 75 chr9 78439920 78439953 -45636219 + A-rich Low_complexity Low_complexity 1 31 0 1 1183 1198 54 0 0 chr9 78439953 78440100 -45636072 + B1_Mus2 SINE Alu 1 147 0 1 1183 297 96 20 75 chr9 78440100 78440213 -45635959 + A-rich Low_complexity Low_complexity 32 139 0 1 1183 312 274 86 26 chr9 78440213 78440329 -45635843 - ID_B1 SINE B4 -16 208 86 1 1183 22 0 0 0 chr9 78440377 78440399 -45635773 + AT_rich Low_complexity Low_complexity 1 22 0 1 1183 464 161 57 12 chr9 78440415 78440524 -45635648 - PB1D9 SINE Alu -21 126 19 1 1183 219 162 0 0 chr9 78440539 78440576 -45635596 + (TATATG)n Simple_repeat Simple_repeat 1 37 0 1 1183 360 200 0 0 chr9 78440577 78440657 -45635515 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 1 1183 327 233 21 43 chr9 78440738 78440832 -45635340 + B3 SINE B2 124 215 -1 1 1183 828 259 54 24 chr9 78441141 78441474 -45634698 + RLTR15 LTR ERVK 1 343 -16 1 1183 386 221 188 28 chr9 78441743 78441887 -45634285 - L1MA10 LINE L1 -33 6301 6135 1 1183 924 169 11 11 chr9 78441887 78442073 -45634099 - B2_Mm2 SINE B2 -1 194 9 1 1183 534 70 0 0 chr9 78442347 78442418 -45633754 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1 1183 788 149 8 0 chr9 78442418 78442552 -45633620 - B1_Mur4 SINE Alu -7 143 9 1 1183 758 144 59 29 chr9 78442673 78442809 -45633363 + B1_Mur4 SINE Alu 2 141 -9 1 1183 751 219 23 38 chr9 78443578 78443798 -45632374 - B3A SINE B2 -2 214 1 1 1183 330 303 101 83 chr9 78444121 78444290 -45631882 + B3A SINE B2 3 174 -24 1 1183 1046 65 50 0 chr9 78444318 78444457 -45631715 - B1_Mus1 SINE Alu -1 147 2 1 1183 331 181 40 40 chr9 78444592 78444702 -45631470 + MLT1A LTR MaLR 267 431 -36 1 1183 882 197 78 26 chr9 78445847 78446040 -45630132 - B3 SINE B2 -12 204 2 1 1183 701 190 0 0 chr9 78446078 78446199 -45629973 + B1_Mur1 SINE Alu 9 129 -20 1 1183 2833 42 31 8 chr9 78446201 78446582 -45629590 + MTA_Mm LTR MaLR 1 390 -6 1 1183 300 27 0 0 chr9 78446583 78446620 -45629552 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 1183 314 200 12 24 chr9 78446728 78446810 -45629362 + PB1D9 SINE Alu 40 120 0 1 1183 477 98 23 39 chr9 78446810 78446837 -45629335 + A-rich Low_complexity Low_complexity 5 31 0 1 1183 1161 56 14 0 chr9 78446837 78446981 -45629191 + B1_Mm SINE Alu 2 147 0 1 1183 477 98 23 39 chr9 78446981 78447081 -45629091 + A-rich Low_complexity Low_complexity 32 130 0 1 1183 522 172 12 7 chr9 78447378 78447508 -45628664 + B1_Mur1 SINE Alu 17 149 -1 1 1183 565 261 107 34 chr9 78447866 78448072 -45628100 + ID_B1 SINE B4 1 221 -3 1 1183 898 167 200 0 chr9 78448150 78448330 -45627842 + B3 SINE B2 1 216 0 1 1183 846 115 34 22 chr9 78448780 78448958 -45627214 + C-rich Low_complexity Low_complexity 1 180 0 1 1183 1292 88 11 32 chr9 78449476 78449665 -45626507 - B2_Mm2 SINE B2 -10 185 1 1 1183 716 50 11 6 chr9 78449811 78449921 -45626251 - B1_Mus2 SINE Alu -1 148 43 1 1183 379 299 0 10 chr9 78449956 78450039 -45626133 + MTEa LTR MaLR 1 82 -297 1 1183 1297 233 106 46 chr9 78450039 78450126 -45626046 - MTD LTR MaLR 0 419 328 1 1183 1281 174 198 13 chr9 78450126 78450440 -45625732 - ORR1D1 LTR MaLR 0 374 3 1 1183 1297 233 106 46 chr9 78450440 78450747 -45625425 - MTD LTR MaLR -92 327 1 1 1183 859 260 21 121 chr9 78450747 78450849 -45625323 + MTEa LTR MaLR 78 176 -203 1 1183 488 217 238 65 chr9 78450849 78451017 -45625155 + B3A SINE B2 2 198 0 1 1183 859 260 21 121 chr9 78451017 78451245 -45624927 + MTEa LTR MaLR 177 375 -4 1 1183 1184 236 16 29 chr9 78451245 78451392 -45624780 + MTEa-int LTR MaLR 2 151 -1429 1 1183 1978 99 75 10 chr9 78451392 78451698 -45624474 - ORR1A3 LTR MaLR 0 326 1 1 1183 1184 236 16 29 chr9 78451698 78451861 -45624311 + MTEa-int LTR MaLR 152 308 -1272 1 1183 1840 131 42 65 chr9 78451861 78452246 -45623926 - RLTR14 LTR ERV1 0 382 7 1 1183 2594 285 84 71 chr9 78452282 78453474 -45622698 + MTEa-int LTR MaLR 368 1574 -6 1 1183 876 240 93 108 chr9 78453484 78453807 -45622365 + MTEa LTR MaLR 1 318 -61 1 1183 400 261 48 40 chr9 78454161 78454285 -45621887 - B4 SINE B4 -19 273 149 1 1183 825 188 60 12 chr9 78454300 78454467 -45621705 - Lx5 LINE L1 -200 6850 6676 1 1183 429 203 21 57 chr9 78454473 78454614 -45621558 + Lx5 LINE L1 6907 7042 -8 1 1183 579 281 0 8 chr9 78454652 78454781 -45621391 + RSINE1 SINE B4 3 130 -35 1 1183 632 191 54 31 chr9 78456011 78456141 -45620031 + B1_Mur1 SINE Alu 4 136 -13 1 1183 279 0 0 0 chr9 78456141 78456172 -45620000 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 1183 225 188 0 45 chr9 78456218 78456285 -45619887 + A-rich Low_complexity Low_complexity 2 65 0 1 1183 822 153 0 74 chr9 78456369 78456517 -45619655 + B1_Mur3 SINE Alu 2 138 -11 1 1183 547 232 48 21 chr9 78456544 78456689 -45619483 + RSINE1 SINE B4 6 154 -11 1 1183 1012 278 82 11 chr9 78457557 78457921 -45618251 - L1MB3 LINE L1 -165 6018 5629 1 1183 741 104 21 0 chr9 78457997 78458141 -45618031 + (TCTA)n Simple_repeat Simple_repeat 3 149 0 1 1183 758 149 0 0 chr9 78458174 78458295 -45617877 - B1_Mur4 SINE Alu -29 121 1 1 1183 495 198 72 0 chr9 78458525 78458636 -45617536 - B1_Mur1 SINE Alu -17 132 14 1 1183 703 238 7 0 chr9 78458896 78459043 -45617129 - B3 SINE B2 -53 163 16 1 1183 1387 90 16 16 chr9 78459231 78459423 -45616749 - B2_Mm2 SINE B2 0 195 4 1 1183 428 259 160 0 chr9 78459588 78459719 -45616453 - MTEb LTR MaLR -191 188 37 1 1183 641 244 50 40 chr9 78459717 78459918 -45616254 - MTEb LTR MaLR -171 208 6 1 1183 576 40 0 0 chr9 78460184 78460259 -45615913 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1183 444 277 77 0 chr9 78460263 78460393 -45615779 - RSINE1 SINE B4 -25 140 1 1 1183 1331 184 184 0 chr9 78460396 78460706 -45615466 - ORR1D2 LTR MaLR -3 367 1 1 1183 2386 110 3 0 chr9 78460990 78461316 -45614856 - ORR1A2 LTR MaLR 0 327 1 1 1183 220 327 9 26 chr9 78461442 78461555 -45614617 + GA-rich Low_complexity Low_complexity 4 114 0 1 1183 215 23 0 170 chr9 78461629 78461682 -45614490 + T-rich Low_complexity Low_complexity 1 44 0 1 1183 214 308 0 0 chr9 78462913 78462965 -45613207 + C-rich Low_complexity Low_complexity 2 53 0 1 1183 291 93 0 0 chr9 78463149 78463192 -45612980 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1183 206 88 59 0 chr9 78465375 78465409 -45610763 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1183 192 77 0 0 chr9 78465789 78465815 -45610357 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1183 344 264 17 76 chr9 78466149 78466268 -45609904 - B4A SINE B4 -2 290 179 1 1183 234 308 0 0 chr9 78466291 78466356 -45609816 + MIRc SINE MIR 90 154 -114 1 1183 807 222 53 29 chr9 78466749 78466958 -45609214 - B3 SINE B2 0 216 3 1 1183 1517 42 0 35 chr9 78467568 78467727 -45608445 + B2_Mm1a SINE B2 2 160 -33 1 1183 207 0 0 0 chr9 78467727 78467750 -45608422 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1183 1517 42 0 35 chr9 78467750 78467789 -45608383 + B2_Mm1a SINE B2 161 193 0 1 1183 659 209 8 0 chr9 78467977 78468106 -45608066 - ID_B1 SINE B4 -9 215 86 1 1183 546 174 316 0 chr9 78468671 78468826 -45607346 + B3 SINE B2 3 206 -10 1 1183 486 194 0 39 chr9 78468920 78469060 -45607112 - B1F2 SINE Alu 0 149 24 1 1183 836 231 5 44 chr9 78469166 78469370 -45606802 + B3A SINE B2 1 196 -2 1 1183 897 177 0 0 chr9 78469977 78470124 -45606048 - B1_Mus1 SINE Alu -1 147 1 1 1183 1051 169 9 50 chr9 78470504 78470722 -45605450 - URR1B DNA MER1_type 0 225 17 1 1183 376 261 53 26 chr9 78470808 78470922 -45605250 + PB1D10 SINE Alu 1 117 0 1 1183 377 194 0 139 chr9 78471750 78471858 -45604314 + PB1D7 SINE Alu 27 119 -1 1 1183 275 115 37 37 chr9 78471862 78471916 -45604256 + B1_Mus1 SINE Alu 3 56 -92 1 1183 404 229 29 0 chr9 78471976 78472081 -45604091 + B1_Mus2 SINE Alu 40 147 0 1 1183 336 269 0 61 chr9 78472271 78472370 -45603802 + RSINE1 SINE B4 2 94 -71 1 1183 417 103 0 0 chr9 78472407 78472475 -45603697 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1183 422 199 43 0 chr9 78473292 78473392 -45602780 - PB1D7 SINE Alu -14 106 2 1 1183 453 36 0 0 chr9 78473646 78473701 -45602471 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1183 483 18 0 0 chr9 78474109 78474165 -45602007 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1183 264 59 0 0 chr9 78474792 78474826 -45601346 + (TAA)n Simple_repeat Simple_repeat 1 34 0 1 1183 573 241 0 17 chr9 78474828 78474946 -45601226 - B1_Mur1 SINE Alu -13 136 21 1 1183 342 251 99 29 chr9 78475001 78475173 -45600999 + Charlie5 DNA MER1_type 2371 2554 -70 1 1183 1155 58 0 0 chr9 78475450 78475587 -45600585 + B1_Mus2 SINE Alu 1 137 -10 1 1183 302 0 26 0 chr9 78475587 78475625 -45600547 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1183 263 237 130 30 chr9 78475630 78475730 -45600442 - MER58B DNA MER1_type -30 311 202 1 1183 331 238 74 12 chr9 78475790 78475871 -45600301 - MER58B DNA MER1_type -247 94 9 1 1183 22 0 0 0 chr9 78476432 78476454 -45599718 + AT_rich Low_complexity Low_complexity 1 22 0 1 1183 215 61 30 0 chr9 78477449 78477482 -45598690 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1 1183 231 274 18 9 chr9 78478569 78478683 -45597489 - MER33 DNA MER1_type 0 324 210 1 1183 391 236 14 32 chr9 78478912 78479017 -45597155 - PB1D10 SINE Alu -41 108 3 1 1183 271 231 14 71 chr9 78479055 78479125 -45597047 - MLT1G LTR MaLR -2 589 524 1 1183 429 20 0 0 chr9 78479254 78479304 -45596868 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1183 330 26 0 0 chr9 78479495 78479534 -45596638 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 1183 303 183 85 11 chr9 78479550 78479644 -45596528 - Lx9 LINE L1 -31 7613 7513 1 1183 716 251 186 25 chr9 78480036 78480553 -45595619 + L1MA6 LINE L1 5660 6260 -31 1 1183 477 302 39 0 chr9 78481087 78481216 -45594956 - B1F SINE Alu -7 142 9 1 1183 580 203 16 71 chr9 78482556 78482683 -45593489 + PB1D9 SINE Alu 1 120 0 1 1183 482 190 8 114 chr9 78482973 78483104 -45593068 - PB1D9 SINE Alu -1 119 3 1 1183 266 226 16 0 chr9 78483342 78483404 -45592768 - MLT1F1 LTR MaLR -506 63 1 1 1183 200 184 0 0 chr9 78483809 78483847 -45592325 + G-rich Low_complexity Low_complexity 3 40 0 1 1183 21 82 0 0 chr9 78483932 78483981 -45592191 + AT_rich Low_complexity Low_complexity 1 49 0 1 1183 885 200 0 0 chr9 78487522 78487955 -45588217 + (CA)n Simple_repeat Simple_repeat 1 433 0 1 1183 302 186 46 0 chr9 78487964 78488035 -45588137 - L1MA6 LINE L1 -364 5936 5844 1 1183 555 56 0 0 chr9 78488139 78488210 -45587962 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 1 1183 685 79 18 0 chr9 78488436 78488550 -45587622 + (TC)n Simple_repeat Simple_repeat 1 116 0 1 1183 360 0 0 0 chr9 78488550 78488589 -45587583 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1183 496 186 79 9 chr9 78488610 78488724 -45587448 - L1MA4 LINE L1 -364 5936 5815 1 1183 273 174 14 0 chr9 78488743 78488812 -45587360 - Lx4A LINE L1 -1 7057 6988 1 1183 260 83 0 0 chr9 78488807 78488843 -45587329 + Lx4A LINE L1 6524 6559 -499 1 1183 455 305 72 4 chr9 78488851 78489088 -45587084 - L1MA4 LINE L1 -502 5798 5546 1 1183 937 217 154 91 chr9 78489290 78489640 -45586532 - MTEa LTR MaLR -7 372 1 1 1183 22 0 0 0 chr9 78490147 78490169 -45586003 + AT_rich Low_complexity Low_complexity 1 22 0 1 1183 1295 166 25 13 chr9 78490458 78490696 -45585476 - MTC LTR MaLR -2 419 179 1 1183 2878 281 94 38 chr9 78490706 78491769 -45584403 - Lx8 LINE L1 -256 7217 6095 1 1183 240 35 0 0 chr9 78491988 78492017 -45584155 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1 1183 862 153 42 0 chr9 78492017 78492154 -45584018 - B1_Mur4 SINE Alu -6 144 2 1 1183 241 247 0 0 chr9 78492181 78492243 -45583929 - B1F2 SINE Alu -87 62 1 1 1183 548 339 68 0 chr9 78492458 78492765 -45583407 + L1MB2 LINE L1 5810 6137 -34 1 1183 234 0 0 0 chr9 78493919 78493945 -45582227 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1183 1240 180 18 13 chr9 78494504 78494729 -45581443 + URR1A DNA MER1_type 1 226 0 1 1183 317 125 18 0 chr9 78494841 78494897 -45581275 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1183 1045 59 19 50 chr9 78494932 78495092 -45581080 - B2_Mm2 SINE B2 -5 190 36 1 1183 30 45 0 0 chr9 78495098 78495142 -45581030 + AT_rich Low_complexity Low_complexity 1 44 0 1 1183 414 238 198 0 chr9 78495600 78495726 -45580446 - B3 SINE B2 -65 151 1 1 1183 555 186 66 0 chr9 78495771 78495908 -45580264 - B3 SINE B2 -8 208 4 1 1183 22 0 0 0 chr9 78495918 78495940 -45580232 + AT_rich Low_complexity Low_complexity 1 22 0 1 1183 1180 75 0 0 chr9 78496115 78496262 -45579910 + B1_Mus2 SINE Alu 1 147 0 1 1183 448 340 91 37 chr9 78496597 78497061 -45579111 + L2 LINE L2 2463 2951 -468 1 1183 410 0 0 20 chr9 78498365 78498416 -45577756 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1 1183 988 191 26 5 chr9 78498416 78498605 -45577567 - B3 SINE B2 -17 199 7 1 1183 485 202 176 0 chr9 78498937 78499056 -45577116 - B1_Mus2 SINE Alu -2 145 6 1 1183 262 250 43 14 chr9 78499000 78499069 -45577103 - B4 SINE B4 -143 149 79 1 1183 495 196 245 35 chr9 78499567 78499710 -45576462 - B3A SINE B2 -25 173 1 1 1183 216 288 29 29 chr9 78499931 78499999 -45576173 + B1F SINE Alu 40 107 -42 1 1183 2246 182 86 20 chr9 78500266 78500522 -45575650 - RMER16 LTR ERVK 0 533 265 1 1183 7237 69 8 1 chr9 78500522 78501460 -45574712 + L1Md_F2 LINE L1 5625 6569 -13 2 1183 2246 182 86 20 chr9 78501460 78501703 -45574469 - RMER16 LTR ERVK -269 264 1 1 1183 555 302 22 11 chr9 78502101 78502270 -45573902 - B3 SINE B2 -11 187 8 3 1183 1142 199 9 9 chr9 78502667 78502880 -45573292 - B3 SINE B2 -1 215 3 4 1183 396 270 43 17 chr9 78502886 78503003 -45573169 - B1F2 SINE Alu 0 149 30 5 1183 21 0 0 0 chr9 78503015 78503036 -45573136 + AT_rich Low_complexity Low_complexity 1 21 0 6 1183 212 265 176 0 chr9 78503058 78503126 -45573046 + ID4_ SINE ID 1 80 -3 7 1183 253 200 44 44 chr9 78503646 78503714 -45572458 - MER58B DNA MER1_type -219 122 55 8 1183 525 266 126 20 chr9 78503787 78504033 -45572139 + MER33 DNA MER1_type 52 323 -1 9 1183 682 252 7 0 chr9 78504059 78504206 -45571966 - B1_Mur2 SINE Alu 0 149 2 1 1183 388 88 27 0 chr9 78504460 78504523 -45571649 - B2_Mm2 SINE B2 -102 114 47 1 1183 1215 104 23 0 chr9 78504554 78504727 -45571445 - B2_Mm2 SINE B2 -17 178 2 1 1183 682 245 53 48 chr9 78504795 78505001 -45571171 + B3 SINE B2 1 207 -9 1 1183 7252 58 13 1 chr9 78506244 78507266 -45568906 + L1_Mus2 LINE L1 5533 6566 0 1 1183 406 225 67 0 chr9 78507795 78507884 -45568288 - PB1D10 SINE Alu 0 117 23 1 1183 409 309 0 48 chr9 78508233 78508379 -45567793 + ID_B1 SINE B4 78 216 -8 1 1183 858 184 0 28 chr9 78509695 78509840 -45566332 + B1_Mur4 SINE Alu 1 141 -9 1 1183 263 26 0 49 chr9 78509840 78509881 -45566291 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1183 1268 113 0 25 chr9 78509974 78510174 -45565998 - B2_Mm2 SINE B2 0 195 1 1 1183 354 23 0 0 chr9 78510850 78510893 -45565279 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1184 489 220 37 0 chr9 78512639 78512748 -45563424 - B1F SINE Alu -19 130 18 2 1184 644 172 42 25 chr9 78512743 78512862 -45563310 - B1_Mur3 SINE Alu -28 121 1 2 1184 23 0 0 0 chr9 78513415 78513438 -45562734 + AT_rich Low_complexity Low_complexity 1 23 0 2 1184 180 0 0 0 chr9 78513545 78513565 -45562607 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1184 531 285 18 42 chr9 78513576 78513741 -45562431 - RSINE1 SINE B4 0 165 5 2 1184 651 319 24 22 chr9 78514173 78514374 -45561798 + B3A SINE B2 2 193 -23 2 1184 252 275 44 0 chr9 78514595 78514686 -45561486 + L1MA5 LINE L1 6202 6296 -4 2 1184 249 33 0 0 chr9 78515010 78515040 -45561132 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 1184 2044 214 32 15 chr9 78515871 78516346 -45559826 - RLTR31_Mur LTR ERVK -70 483 1 2 1184 265 312 25 0 chr9 78516453 78516533 -45559639 - ID4 SINE ID 0 83 2 3 1184 1242 41 0 0 chr9 78517800 78517946 -45558226 + B1_Mus2 SINE Alu 2 147 0 3 1184 22 56 0 0 chr9 78518108 78518144 -45558028 + AT_rich Low_complexity Low_complexity 1 36 0 3 1184 573 76 0 0 chr9 78518286 78518365 -45557807 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1184 185 0 0 39 chr9 78518449 78518462 -45557710 + (TTA)n Simple_repeat Simple_repeat 1 13 0 3 1184 860 158 0 27 chr9 78518462 78518612 -45557560 - B1_Mur4 SINE Alu -4 146 1 3 1184 185 0 0 39 chr9 78518612 78518624 -45557548 + (TTA)n Simple_repeat Simple_repeat 1 12 0 3 1184 334 306 82 0 chr9 78518624 78518722 -45557450 - PB1D10 SINE Alu -9 108 3 3 1184 524 241 0 27 chr9 78518792 78518941 -45557231 - L1M3 LINE L1 -449 5731 5587 3 1184 1063 95 0 7 chr9 78519063 78519211 -45556961 + B1_Mm SINE Alu 1 147 0 3 1184 1199 89 0 6 chr9 78520077 78520257 -45555915 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1184 260 192 0 19 chr9 78520971 78521024 -45555148 - B3 SINE B2 -7 209 158 4 1184 1170 48 0 20 chr9 78521043 78521193 -45554979 - B1_Mm SINE Alu 0 147 1 4 1184 227 131 91 76 chr9 78521200 78521266 -45554906 - B2_Mm2 SINE B2 -9 186 120 4 1184 362 243 115 18 chr9 78521356 78521369 -45554803 - B4A SINE B4 -168 124 1 4 1184 787 50 0 0 chr9 78521369 78521469 -45554703 - B2_Mm2 SINE B2 -95 100 1 4 1184 418 298 43 57 chr9 78521539 78521749 -45554423 + MER2 DNA MER2_type 87 293 -52 4 1184 808 241 82 46 chr9 78522124 78522320 -45553852 + B3 SINE B2 4 206 -10 4 1184 245 327 38 9 chr9 78522328 78522433 -45553739 + MIR SINE MIR 83 190 -72 4 1184 22 70 0 0 chr9 78522748 78522791 -45553381 + AT_rich Low_complexity Low_complexity 1 43 0 4 1184 2184 169 128 61 chr9 78522791 78523383 -45552789 - Lx9 LINE L1 -3 7641 7010 5 1184 1224 131 9 23 chr9 78523855 78524074 -45552098 - Lx9 LINE L1 -633 7011 6796 5 1184 32 0 0 0 chr9 78524074 78524106 -45552066 + AT_rich Low_complexity Low_complexity 1 32 0 5 1184 2257 177 45 2 chr9 78524132 78524590 -45551582 - Lx2B LINE L1 -89 6969 6395 5 1184 500 186 45 23 chr9 78524697 78524829 -45551343 - L1_Rod LINE L1 -915 4932 4798 5 1184 299 172 143 51 chr9 78524829 78524927 -45551245 - L1_Rod LINE L1 -1883 3964 3858 5 1184 1186 178 59 14 chr9 78524933 78525223 -45550949 - L1_Rod LINE L1 -4022 1825 1523 5 1184 6469 187 39 8 chr9 78525332 78526784 -45549388 - Lx5 LINE L1 -15 7035 5530 5 1184 375 248 168 0 chr9 78527185 78527286 -45548886 - B1_Mur2 SINE Alu -2 147 30 5 1184 31 0 0 0 chr9 78527527 78527558 -45548614 + AT_rich Low_complexity Low_complexity 1 31 0 5 1184 733 174 281 0 chr9 78528901 78529068 -45547104 - B3 SINE B2 0 216 3 5 1184 530 29 15 0 chr9 78529072 78529140 -45547032 + (TTA)n Simple_repeat Simple_repeat 2 70 0 5 1184 555 259 11 80 chr9 78529140 78529316 -45546856 - RSINE1 SINE B4 -1 164 1 5 1184 216 67 0 0 chr9 78529390 78529420 -45546752 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1184 1492 53 16 0 chr9 78529458 78529647 -45546525 - B2_Mm1a SINE B2 -1 192 1 6 1184 1144 98 15 80 chr9 78529753 78529915 -45546257 + B2_Mm2 SINE B2 2 161 -34 6 1184 217 51 0 49 chr9 78529915 78529956 -45546216 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 1184 1144 98 15 80 chr9 78529956 78529992 -45546180 + B2_Mm2 SINE B2 162 187 -8 6 1184 2621 78 67 8 chr9 78530235 78530611 -45545561 - L1Md_F2 LINE L1 -1 6581 6184 6 1184 890 234 50 20 chr9 78531108 78531309 -45544863 - B3 SINE B2 -9 207 1 6 1184 263 331 104 8 chr9 78531339 78531464 -45544708 - MLT1L LTR MaLR -321 289 153 6 1184 235 283 65 11 chr9 78531469 78531562 -45544610 - MER20B DNA MER1_type 0 783 686 6 1184 525 296 70 32 chr9 78531910 78532095 -45544077 + RMER30 DNA MER1_type 2 193 -9 6 1184 221 184 20 0 chr9 78532866 78532915 -45543257 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 6 1184 352 353 74 32 chr9 78532957 78533267 -45542905 - Lx8 LINE L1 -2 7471 7149 7 1184 226 304 165 0 chr9 78533281 78533360 -45542812 - Lx8 LINE L1 -586 6887 6796 7 1184 1267 254 67 19 chr9 78533358 78533731 -45542441 - Lx8 LINE L1 -807 6666 6276 7 1184 2991 150 23 37 chr9 78534003 78534572 -45541600 + RLTR31_Mm LTR ERVK 1 561 0 7 1184 225 0 0 0 chr9 78534696 78534721 -45541451 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1184 656 237 0 0 chr9 78535232 78535363 -45540809 + B1F2 SINE Alu 2 132 -17 7 1184 1096 191 22 14 chr9 78535368 78535591 -45540581 - URR1B DNA MER1_type 0 225 1 7 1184 267 200 0 39 chr9 78535613 78535665 -45540507 + PB1D9 SINE Alu 5 54 -66 7 1184 668 257 0 0 chr9 78535671 78535937 -45540235 + GA-rich Low_complexity Low_complexity 1 266 0 7 1184 566 204 0 20 chr9 78535940 78536040 -45540132 + B1_Mur1 SINE Alu 42 139 -10 7 1184 387 0 0 0 chr9 78536041 78536084 -45540088 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 7 1184 235 267 0 0 chr9 78537895 78537940 -45538232 + polypyrimidine Low_complexity Low_complexity 1 45 0 7 1184 260 304 65 0 chr9 78537940 78537968 -45538204 - BC1_Mm scRNA scRNA -53 99 2 8 1184 300 250 16 0 chr9 78537968 78538032 -45538140 - ID SINE ID -158 66 2 8 1184 495 232 36 0 chr9 78538032 78538144 -45538028 - PB1D10 SINE Alu -1 116 1 8 1184 1008 104 0 0 chr9 78538714 78538848 -45537324 + B1_Mus2 SINE Alu 2 135 -12 8 1184 269 311 28 55 chr9 78539658 78539767 -45536405 - MIR SINE MIR -133 129 24 8 1184 1188 114 0 0 chr9 78540017 78540244 -45535928 + (TG)n Simple_repeat Simple_repeat 1 227 0 8 1184 261 103 0 65 chr9 78540256 78540318 -45535854 + CT-rich Low_complexity Low_complexity 5 62 0 8 1184 290 276 102 17 chr9 78540492 78540610 -45535562 - MIR SINE MIR -37 225 98 8 1184 605 255 63 14 chr9 78541197 78541340 -45534832 - RSINE1 SINE B4 0 165 16 8 1184 245 279 15 0 chr9 78541446 78541514 -45534658 - ID4 SINE ID -13 70 2 8 1184 223 347 41 20 chr9 78542298 78542445 -45533727 + MIR SINE MIR 103 252 -10 9 1184 481 254 176 19 chr9 78542917 78543130 -45533042 - B4A SINE B4 -15 277 32 9 1184 450 0 0 0 chr9 78543183 78543233 -45532939 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1184 240 236 149 11 chr9 78544381 78544475 -45531697 + PB1D7 SINE Alu 2 108 -12 9 1184 1428 50 0 0 chr9 78544641 78544862 -45531310 + (TCTA)n Simple_repeat Simple_repeat 1 221 0 9 1184 683 312 10 68 chr9 78544995 78545287 -45530885 + B4A SINE B4 2 276 -16 9 1184 426 20 0 0 chr9 78545289 78545340 -45530832 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1184 22 0 0 0 chr9 78545735 78545757 -45530415 + AT_rich Low_complexity Low_complexity 1 22 0 9 1184 4664 103 31 3 chr9 78546676 78546959 -45529213 - Lx2 LINE L1 -6 6991 6695 9 1184 753 84 0 0 chr9 78546959 78547078 -45529094 + (TG)n Simple_repeat Simple_repeat 2 120 0 9 1184 4664 103 31 3 chr9 78547078 78547507 -45528665 - Lx2 LINE L1 -303 6694 6261 9 1184 500 0 17 0 chr9 78548367 78548427 -45527745 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1 1184 1350 6 5 27 chr9 78548431 78548615 -45527557 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1184 382 262 97 0 chr9 78548634 78548737 -45527435 - B3 SINE B2 -13 203 91 1 1184 734 254 28 11 chr9 78548996 78549175 -45526997 + B3A SINE B2 1 182 -16 1 1184 816 181 0 12 chr9 78549175 78549661 -45526511 + (CA)n Simple_repeat Simple_repeat 1 479 0 1 1184 290 196 9 0 chr9 78549679 78549786 -45526386 + (CA)n Simple_repeat Simple_repeat 2 109 0 1 1184 846 142 0 0 chr9 78549808 78550024 -45526148 + (CA)n Simple_repeat Simple_repeat 1 216 0 1 1184 378 33 50 0 chr9 78550026 78550086 -45526086 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1184 308 83 0 20 chr9 78550507 78550556 -45525616 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1184 204 158 0 0 chr9 78552115 78552153 -45524019 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 1 1184 1043 130 0 0 chr9 78552155 78552301 -45523871 - B1_Mur4 SINE Alu -2 148 3 1 1184 186 43 0 0 chr9 78552301 78552324 -45523848 + (CAT)n Simple_repeat Simple_repeat 1 23 0 1 1184 394 253 39 25 chr9 78552327 78552435 -45523737 - B1F2 SINE Alu 0 117 15 1 1184 353 233 91 23 chr9 78553013 78553101 -45523071 + RSINE1 SINE B4 3 96 -69 1 1184 273 308 142 34 chr9 78553179 78553327 -45522845 - RSINE1 SINE B4 0 165 2 1 1184 39 50 0 0 chr9 78554989 78555049 -45521123 + AT_rich Low_complexity Low_complexity 1 60 0 1 1184 546 304 13 39 chr9 78555647 78555801 -45520371 - B3 SINE B2 -66 150 1 1 1184 327 367 86 7 chr9 78555849 78555989 -45520183 - RSINE1 SINE B4 -7 158 8 1 1184 1840 229 18 13 chr9 78556019 78556417 -45519755 + Lx8 LINE L1 6267 6666 -807 1 1184 926 294 60 11 chr9 78558242 78558507 -45517665 + B4A SINE B4 1 278 -14 1 1184 212 140 23 23 chr9 78558679 78558723 -45517449 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1184 871 301 36 11 chr9 78558759 78559038 -45517134 - B4A SINE B4 -5 287 2 1 1184 22 0 0 0 chr9 78559070 78559092 -45517080 + AT_rich Low_complexity Low_complexity 1 22 0 1 1184 730 290 93 38 chr9 78559261 78559641 -45516531 - Lx8 LINE L1 -136 6020 5587 1 1184 557 90 0 11 chr9 78559691 78559781 -45516391 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1184 312 83 0 0 chr9 78559781 78559829 -45516343 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1184 188 359 13 52 chr9 78560079 78560232 -45515940 + MIRb SINE MIR 119 265 -3 1 1184 306 0 0 0 chr9 78560307 78560341 -45515831 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 1 1184 1078 74 7 0 chr9 78561564 78561699 -45514473 + B1_Mus1 SINE Alu 2 137 -11 1 1184 210 37 0 0 chr9 78561700 78561727 -45514445 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1184 298 161 53 21 chr9 78561741 78561836 -45514336 + (TA)n Simple_repeat Simple_repeat 1 98 0 1 1184 29 28 0 0 chr9 78561976 78562012 -45514160 + AT_rich Low_complexity Low_complexity 1 36 0 1 1184 230 250 0 0 chr9 78563940 78563988 -45512184 + CT-rich Low_complexity Low_complexity 3 50 0 1 1184 479 65 43 0 chr9 78564393 78564486 -45511686 + (TATAA)n Simple_repeat Simple_repeat 1 97 0 1 1184 1354 36 9 0 chr9 78564655 78564875 -45511297 + (GAA)n Simple_repeat Simple_repeat 1 222 0 1 1184 291 200 11 43 chr9 78565189 78565283 -45510889 + T-rich Low_complexity Low_complexity 4 94 0 1 1184 259 281 0 0 chr9 78565386 78565443 -45510729 + polypyrimidine Low_complexity Low_complexity 4 60 0 1 1184 553 286 57 57 chr9 78565878 78566089 -45510083 + ID_B1 SINE B4 3 213 -11 1 1184 367 178 79 40 chr9 78566089 78566165 -45510007 + ID4_ SINE ID 3 81 -2 1 1184 3062 147 68 14 chr9 78566328 78566913 -45509259 - RMER6C LTR ERVK 0 690 74 1 1184 1841 159 3 24 chr9 78567512 78567847 -45508325 - ORR1A1 LTR MaLR -8 338 11 1 1184 25 0 0 0 chr9 78567996 78568021 -45508151 + AT_rich Low_complexity Low_complexity 1 25 0 1 1184 234 0 0 0 chr9 78568813 78568839 -45507333 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1184 305 186 28 28 chr9 78569844 78569916 -45506256 - HAL1-3A_ME LINE L1 -811 2047 1976 1 1184 336 119 69 35 chr9 78569916 78570090 -45506082 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1184 1098 93 0 28 chr9 78570737 78570881 -45505291 + B1_Mm SINE Alu 1 140 -7 1 1184 228 143 0 0 chr9 78570883 78570925 -45505247 + (AGGGGG)n Simple_repeat Simple_repeat 1 42 0 1 1184 734 150 0 6 chr9 78570972 78571140 -45505032 + GA-rich Low_complexity Low_complexity 2 168 0 1 1184 1308 214 151 6 chr9 78571140 78571465 -45504707 + MTD LTR MaLR 48 419 0 1 1184 262 272 223 21 chr9 78571795 78571983 -45504189 - MIRb SINE MIR -17 251 26 1 1184 37 23 0 0 chr9 78572814 78572858 -45503314 + AT_rich Low_complexity Low_complexity 1 44 0 1 1184 281 183 376 0 chr9 78572858 78572951 -45503221 - B3 SINE B2 -11 205 78 1 1184 687 141 2 0 chr9 78573216 78573325 -45502847 - B3 SINE B2 -85 113 3 1 1184 664 302 108 15 chr9 78573824 78574157 -45502015 - L1MB3 LINE L1 -4 6179 5816 1 1184 3164 99 30 11 chr9 78574174 78574614 -45501558 - L1_Mus3 LINE L1 -4 6634 6187 1 1184 5072 94 27 9 chr9 78574822 78575488 -45500684 + RLTR33 LTR ERVK 1 678 0 1 1184 412 280 30 8 chr9 78575502 78575635 -45500537 - L1MB3 LINE L1 -432 5751 5616 1 1184 682 255 57 21 chr9 78575648 78575840 -45500332 - ID_B1 SINE B4 -1 223 25 1 1184 387 281 61 39 chr9 78575860 78576062 -45500110 - L1MB3 LINE L1 -571 5600 5395 1 1184 596 162 12 5 chr9 78576081 78576184 -45499988 - B1_Mur3 SINE Alu 0 149 28 1 1184 222 37 0 0 chr9 78576184 78576211 -45499961 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 1 1184 260 277 33 82 chr9 78576211 78576229 -45499943 - PB1 SINE Alu -100 27 12 1 1184 498 286 119 13 chr9 78576230 78576542 -45499630 - L1MB3 LINE L1 -1050 5090 4746 1 1184 1188 214 92 47 chr9 78576552 78576890 -45499282 - Lx9 LINE L1 -9 7635 7283 1 1184 239 288 88 22 chr9 78576890 78577043 -45499129 - L1MB3 LINE L1 -1397 4749 4578 1 1184 306 271 0 0 chr9 78577086 78577193 -45498979 + (CA)n Simple_repeat Simple_repeat 1 107 0 1 1184 270 0 0 0 chr9 78577600 78577630 -45498542 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1184 1283 82 35 0 chr9 78577630 78577800 -45498372 - B2_Mm1t SINE B2 -17 176 1 1 1184 32 26 0 0 chr9 78577941 78577980 -45498192 + AT_rich Low_complexity Low_complexity 1 39 0 1 1184 1672 192 69 57 chr9 78578355 78578792 -45497380 + RMER10A LTR ERVL 1 442 0 1 1184 230 152 174 0 chr9 78579444 78579490 -45496682 + RMER10A LTR ERVL 101 154 -288 1 1184 3088 159 31 38 chr9 78580191 78580773 -45495399 - RLTR20A2 LTR ERVK 0 578 1 1 1184 299 65 0 21 chr9 78581257 78581304 -45494868 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 1 1184 2292 148 59 8 chr9 78582020 78582395 -45493777 + ORR1B1 LTR MaLR 1 394 0 1 1184 2747 33 0 0 chr9 78582601 78582907 -45493265 - L1Md_F2 LINE L1 -15 6567 6262 1 1184 310 243 40 0 chr9 78583065 78583173 -45492999 - L1MB2 LINE L1 -183 5988 5878 1 1184 28 0 0 0 chr9 78583894 78583922 -45492250 + AT_rich Low_complexity Low_complexity 1 28 0 1 1184 3975 245 59 93 chr9 78583930 78585497 -45490675 - Lx5 LINE L1 -18 7032 5497 1 1184 724 246 48 32 chr9 78587195 78587384 -45488788 - B3A SINE B2 -6 192 1 1 1184 363 73 0 0 chr9 78588574 78588629 -45487543 + (CCAA)n Simple_repeat Simple_repeat 2 56 0 1 1184 1032 246 135 29 chr9 78588744 78589091 -45487081 - Lx5 LINE L1 -16 7034 6651 1 1184 259 289 186 3 chr9 78589225 78589354 -45486818 + MIRc SINE MIR 1 149 -119 1 1184 183 80 0 0 chr9 78589797 78589822 -45486350 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1184 23 33 0 0 chr9 78590893 78590923 -45485249 + AT_rich Low_complexity Low_complexity 1 30 0 1 1184 2095 297 55 39 chr9 78590933 78591405 -45484767 - Lx8 LINE L1 -10 7463 6981 1 1184 2970 30 70 0 chr9 78591405 78591736 -45484436 - IAPEY2_LTR LTR ERVK -3 354 1 1 1184 2095 297 55 39 chr9 78591736 78592102 -45484070 - Lx8 LINE L1 -493 6980 6612 1 1184 691 219 36 7 chr9 78592131 78592269 -45483903 - B1F1 SINE Alu -7 142 1 1 1184 218 97 0 0 chr9 78592913 78592944 -45483228 - ID4 SINE ID -51 32 2 1 1184 395 281 26 17 chr9 78593641 78593757 -45482415 + B4A SINE B4 1 117 -175 1 1184 3953 92 3 7 chr9 78593838 78594395 -45481777 + MusHAL1 LINE L1 1690 2248 -464 1 1184 4695 49 9 7 chr9 78594395 78594951 -45481221 + L1Md_F2 LINE L1 6026 6582 0 1 1184 7372 113 14 13 chr9 78594956 78596060 -45480112 + Lx LINE L1 5314 6433 -221 1 1184 2875 35 28 0 chr9 78596060 78596378 -45479794 - IAPLTR2b LTR ERVK 0 327 1 1 1184 7372 103 16 16 chr9 78596378 78596604 -45479568 + Lx LINE L1 6434 6644 -10 1 1184 371 267 127 0 chr9 78596604 78596754 -45479418 + MLT1C LTR MaLR 64 232 -235 1 1184 272 296 214 0 chr9 78597271 78597355 -45478817 - PB1D10 SINE Alu -5 112 14 1 1184 198 71 0 0 chr9 78598799 78598827 -45477345 + (CTA)n Simple_repeat Simple_repeat 2 29 0 1 1184 452 77 13 4 chr9 78598828 78598918 -45477254 - B2_Mm2 SINE B2 -24 171 47 1 1184 1270 103 17 0 chr9 78598945 78599119 -45477053 - B2_Mm1t SINE B2 -14 179 3 1 1184 317 136 15 0 chr9 78599691 78599757 -45476415 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 1 1184 618 191 0 9 chr9 78600345 78600456 -45475716 + PB1D10 SINE Alu 6 115 -2 1 1184 355 324 117 82 chr9 78600418 78600761 -45475411 + MER21B LTR ERV1 508 862 -1 1 1184 325 269 9 9 chr9 78600919 78601028 -45475144 + HAL1-2a_MD LINE L1 2421 2529 -495 1 1184 812 283 48 37 chr9 78601302 78601570 -45474602 - B4A SINE B4 -20 272 2 1 1184 1086 210 33 161 chr9 78602001 78602474 -45473698 + RMER19C LTR ERVK 4 426 -311 1 1184 8401 31 6 5 chr9 78602474 78602489 -45473683 - L1Md_F2 LINE L1 -2 6580 6566 1 1184 4853 59 2 0 chr9 78602489 78603052 -45473120 - L1_Mus1 LINE L1 -1 6566 6003 1 1184 380 20 20 0 chr9 78603054 78603103 -45473069 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1 1184 36296 76 14 6 chr9 78603103 78609310 -45466862 - L1Md_F2 LINE L1 -17 6565 308 1 1184 497 245 193 10 chr9 78609313 78609530 -45466642 + RMER19C LTR ERVK 350 782 -120 1 1184 232 131 21 21 chr9 78609679 78609726 -45466446 - Charlie1b DNA MER1_type -314 209 163 2 1184 6574 63 20 6 chr9 78609769 78610566 -45465606 - RLTR13C2 LTR ERVK 0 808 1 2 1184 1329 234 34 13 chr9 78610780 78611161 -45465011 + L1_Rod LINE L1 1391 1779 -4068 2 1184 441 50 0 0 chr9 78611997 78612057 -45464115 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1184 25 0 0 0 chr9 78612289 78612314 -45463858 + AT_rich Low_complexity Low_complexity 1 25 0 2 1184 514 41 14 14 chr9 78612904 78612978 -45463194 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 2 1184 755 235 199 16 chr9 78613814 78614121 -45462051 + MTEa LTR MaLR 15 377 -2 2 1184 598 125 0 18 chr9 78614458 78614504 -45461668 + (TCC)n Simple_repeat Simple_repeat 3 47 0 2 1184 1155 107 0 0 chr9 78614504 78614682 -45461490 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 2 1184 598 125 0 18 chr9 78614682 78614749 -45461423 + (TCC)n Simple_repeat Simple_repeat 2 68 0 2 1184 259 282 37 37 chr9 78615435 78615516 -45460656 + B4 SINE B4 1 81 -211 2 1184 183 129 0 0 chr9 78615589 78615620 -45460552 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2 1184 214 231 0 0 chr9 78616031 78616070 -45460102 + (CAG)n Simple_repeat Simple_repeat 2 40 0 2 1184 300 231 97 30 chr9 78616647 78616812 -45459360 - Lx8 LINE L1 -20 7453 7278 2 1184 384 22 0 0 chr9 78617204 78617249 -45458923 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1184 272 255 105 11 chr9 78617267 78617362 -45458810 - MLT1J LTR MaLR -6 506 403 2 1184 1457 174 108 73 chr9 78617657 78618084 -45458088 + RMER10A LTR ERVL 1 442 0 2 1184 225 89 73 15 chr9 78618403 78618471 -45457701 + (GTATG)n Simple_repeat Simple_repeat 3 74 0 2 1184 985 286 103 42 chr9 78618471 78619033 -45457139 + MER67C LTR ERV1 48 700 -11 2 1184 204 399 74 0 chr9 78619153 78619301 -45456871 - MIR3 SINE MIR -18 190 32 2 1184 21 0 0 0 chr9 78621634 78621655 -45454517 + AT_rich Low_complexity Low_complexity 1 21 0 2 1184 342 0 0 0 chr9 78621832 78621870 -45454302 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1184 1139 68 7 0 chr9 78622599 78622746 -45453426 + B1_Mus1 SINE Alu 1 148 0 2 1184 1363 220 140 8 chr9 78622892 78623250 -45452922 + MTD LTR MaLR 1 405 -14 2 1184 3958 55 0 8 chr9 78624030 78624529 -45451643 + L1Md_F2 LINE L1 6076 6570 -12 2 1184 315 0 0 0 chr9 78625315 78625350 -45450822 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1184 1420 64 11 5 chr9 78625763 78625952 -45450220 + B2_Mm2 SINE B2 1 190 -5 2 1184 285 328 62 31 chr9 78626302 78626431 -45449741 - MER94 DNA AcHobo -1 133 1 2 1184 23 33 0 0 chr9 78626596 78626626 -45449546 + AT_rich Low_complexity Low_complexity 1 30 0 2 1184 189 195 0 0 chr9 78626689 78626730 -45449442 + CT-rich Low_complexity Low_complexity 6 46 0 2 1184 297 0 0 0 chr9 78626734 78626767 -45449405 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1184 369 0 0 0 chr9 78626767 78626807 -45449365 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1184 2756 80 0 8 chr9 78627053 78627430 -45448742 - L1Md_F2 LINE L1 -5 6577 6204 2 1184 1262 261 126 10 chr9 78627544 78628200 -45447972 - L1MA4A LINE L1 -377 5926 5167 2 1184 617 302 71 25 chr9 78628537 78628975 -45447197 - L1M5 LINE L1 -440 5739 5282 2 1184 435 38 0 0 chr9 78629376 78629429 -45446743 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1184 243 262 36 0 chr9 78629627 78629711 -45446461 - L1_Rod LINE L1 -624 5223 5137 2 1184 281 239 10 61 chr9 78629721 78629819 -45446353 - L1MA4A LINE L1 -1881 3999 3907 2 1184 292 347 41 8 chr9 78630525 78630647 -45445525 + MER5A DNA MER1_type 10 135 -54 2 1184 735 12 0 0 chr9 78631353 78631437 -45444735 + (CAG)n Simple_repeat Simple_repeat 2 85 0 2 1184 299 25 0 24 chr9 78632111 78632152 -45444020 + (TGGGGG)n Simple_repeat Simple_repeat 6 45 0 2 1184 314 331 62 81 chr9 78632411 78632572 -45443600 - RSINE1 SINE B4 -1 164 7 2 1184 330 313 51 3 chr9 78632634 78632836 -45443336 - L1M3 LINE L1 -1441 4702 4493 2 1184 496 328 11 38 chr9 78632846 78633030 -45443142 - MER2 DNA MER2_type -11 334 156 2 1184 197 128 21 0 chr9 78633030 78633077 -45443095 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1184 297 100 43 22 chr9 78633160 78633252 -45442920 + (TA)n Simple_repeat Simple_repeat 1 94 0 2 1184 267 31 0 0 chr9 78633316 78633348 -45442824 + (TATG)n Simple_repeat Simple_repeat 3 34 0 2 1184 30 27 0 0 chr9 78634035 78634072 -45442100 + AT_rich Low_complexity Low_complexity 1 37 0 2 1184 28 29 0 0 chr9 78634266 78634301 -45441871 + AT_rich Low_complexity Low_complexity 1 35 0 2 1184 861 10 0 0 chr9 78634445 78634543 -45441629 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 1184 648 289 18 58 chr9 78634556 78634780 -45441392 - ID_B1 SINE B4 -8 216 2 2 1184 326 278 69 40 chr9 78634780 78634881 -45441291 - PB1D10 SINE Alu -1 116 13 2 1184 321 355 40 7 chr9 78635204 78635382 -45440790 - MIR3 SINE MIR -12 196 23 2 1184 181 265 92 46 chr9 78636033 78636120 -45440052 + MIRc SINE MIR 9 99 -169 2 1184 610 320 72 105 chr9 78636452 78636853 -45439319 + MLT1B LTR MaLR 3 390 0 2 1184 209 111 0 62 chr9 78637852 78637900 -45438272 + A-rich Low_complexity Low_complexity 4 48 0 2 1184 21 36 0 0 chr9 78638036 78638064 -45438108 + AT_rich Low_complexity Low_complexity 1 28 0 2 1184 971 226 38 5 chr9 78638074 78638283 -45437889 - B3 SINE B2 0 216 1 2 1184 531 330 42 21 chr9 78638977 78639169 -45437003 - MLT1F2 LTR MaLR -297 263 68 2 1184 537 99 0 0 chr9 78639334 78639415 -45436757 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 1184 340 373 7 26 chr9 78639419 78639573 -45436599 - RSINE1 SINE B4 -12 153 3 2 1184 246 298 24 12 chr9 78640934 78641019 -45435153 + Tigger5 DNA MER2_type 40 125 -2281 2 1184 1124 322 14 71 chr9 78641164 78641758 -45434414 + RMER15-int LTR ERVL 353 912 -4087 2 1184 549 337 103 7 chr9 78641892 78642164 -45434008 + RMER15-int LTR ERVL 207 504 -4495 2 1184 448 305 35 0 chr9 78642184 78642325 -45433847 + RMER15 LTR ERVL 417 562 -13 2 1184 994 301 18 60 chr9 78642334 78643025 -45433147 - L1MA4 LINE L1 -289 6011 5356 2 1184 346 203 0 28 chr9 78643025 78643096 -45433076 - ID4 SINE ID -10 73 5 2 18 635 287 68 63 chr9 78643096 78643478 -45432694 - L1MA4 LINE L1 -776 5367 4990 2 1185 2359 136 127 0 chr9 78643452 78643894 -45432278 - Lx2B LINE L1 -4 6996 6499 2 1185 22 0 0 0 chr9 78643894 78643916 -45432256 + AT_rich Low_complexity Low_complexity 1 22 0 2 1185 1617 37 0 0 chr9 78644405 78644593 -45431579 - B2_Mm1t SINE B2 -4 189 2 2 1185 252 293 0 39 chr9 78644721 78644799 -45431373 + PB1D10 SINE Alu 42 116 -1 2 1185 186 71 0 0 chr9 78644837 78644865 -45431307 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1185 802 341 31 30 chr9 78645107 78645515 -45430657 - MLT1F2 LTR MaLR -160 467 13 2 1185 363 44 0 0 chr9 78646687 78646732 -45429440 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 2 1185 1112 199 131 40 chr9 78646880 78646925 -45429247 - MT2B LTR ERVL -2 599 547 2 1185 648 0 0 0 chr9 78646925 78646997 -45429175 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 2 1185 1112 199 131 40 chr9 78646997 78647249 -45428923 - MT2B LTR ERVL -55 546 275 2 1185 1273 287 102 16 chr9 78647251 78647340 -45428832 - RLTR20C LTR ERVK 0 560 446 2 1185 378 0 0 0 chr9 78647340 78647382 -45428790 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1185 1273 286 78 10 chr9 78647382 78647757 -45428415 - RLTR20C LTR ERVK -107 453 50 2 1185 606 215 77 31 chr9 78647779 78647959 -45428213 - MT2B LTR ERVL -301 174 1 2 1185 1033 202 80 19 chr9 78649011 78649223 -45426949 - URR1B DNA MER1_type 0 225 1 2 1185 1939 315 72 21 chr9 78649387 78650334 -45425838 + Lx8 LINE L1 6451 7445 -28 2 1185 339 65 0 0 chr9 78650911 78650957 -45425215 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1185 275 194 30 0 chr9 78650957 78651024 -45425148 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 2 1185 243 0 0 0 chr9 78651024 78651051 -45425121 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1185 1037 275 103 8 chr9 78651433 78652131 -45424041 + L1M2 LINE L1 4894 5657 -643 2 1185 2217 316 43 47 chr9 78652155 78653252 -45422920 - Lx9 LINE L1 -227 7417 6325 2 1185 4547 53 26 1 chr9 78653249 78653913 -45422259 - MusHAL1 LINE L1 -1943 769 90 2 1185 1528 277 17 35 chr9 78653909 78654488 -45421684 - L1_Rod LINE L1 -1481 4366 3798 2 1185 24 53 0 0 chr9 78654491 78654529 -45421643 + AT_rich Low_complexity Low_complexity 1 38 0 2 1185 249 231 39 0 chr9 78654530 78654608 -45421564 + L1MA4 LINE L1 6174 6254 -46 2 1185 1365 228 141 3 chr9 78654717 78655065 -45421107 + MTD LTR MaLR 1 396 -23 2 1185 2098 106 0 101 chr9 78655065 78655411 -45420761 - RLTR10E LTR ERVK 0 311 1 2 1185 7733 86 5 5 chr9 78655411 78656838 -45419334 - MMERVK10C-int LTR ERVK 0 7680 6228 2 1185 683 93 0 18 chr9 78656838 78656947 -45419225 - MMERVK10C-int LTR ERVK -835 6746 6640 2 1185 421 71 0 0 chr9 78656973 78657029 -45419143 - MMERVK10C-int LTR ERVK -1356 6225 6170 2 1185 1831 9 0 0 chr9 78657029 78657244 -45418928 - L1_Mm LINE L1 -371 5512 5298 2 1185 2032 122 0 101 chr9 78657279 78657625 -45418547 - RLTR10E LTR ERVK 0 311 1 2 1185 788 154 11 11 chr9 78657648 78657825 -45418347 + CT-rich Low_complexity Low_complexity 3 179 0 2 1185 286 22 21 42 chr9 78658038 78658086 -45418086 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1185 812 275 182 0 chr9 78658116 78658363 -45417809 + B4A SINE B4 1 292 0 2 1185 1591 42 33 9 chr9 78659062 78659198 -45416974 + L1Md_F2 LINE L1 6363 6497 -85 2 1185 243 0 0 0 chr9 78659198 78659225 -45416947 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1185 1591 42 33 9 chr9 78659225 78659303 -45416869 + L1Md_F2 LINE L1 6498 6580 -2 2 1185 228 246 0 0 chr9 78660049 78660110 -45416062 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1185 428 185 0 22 chr9 78660111 78660293 -45415879 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 2 1185 547 261 27 63 chr9 78660553 78660774 -45415398 - Lx5 LINE L1 -369 6681 6469 2 1185 2958 193 72 17 chr9 78660759 78661758 -45414414 - Lx5 LINE L1 -684 6366 5289 2 1185 3832 129 19 2 chr9 78661759 78662343 -45413829 - Lx LINE L1 -6 6648 6055 3 1185 507 299 102 12 chr9 78662499 78662665 -45413507 + MER115 DNA Tip100 513 693 0 3 1185 847 182 0 7 chr9 78662793 78662927 -45413245 + B1_Mus1 SINE Alu 2 135 -13 3 1185 795 39 0 0 chr9 78662927 78663030 -45413142 + (CAAAA)n Simple_repeat Simple_repeat 1 103 0 3 1185 850 58 16 0 chr9 78663728 78663849 -45412323 + (TCTA)n Simple_repeat Simple_repeat 3 125 0 3 1185 316 332 50 34 chr9 78664120 78664503 -45411669 - L1MD LINE L1 -1796 4350 3954 3 1185 1223 46 0 0 chr9 78664521 78664672 -45411500 - L1Md_F2 LINE L1 -14 6568 6418 3 1185 927 253 5 35 chr9 78665638 78665673 -45410499 - B3 SINE B2 -21 195 166 3 1185 420 20 0 0 chr9 78665673 78665722 -45410450 + (TATG)n Simple_repeat Simple_repeat 2 50 0 3 1185 927 253 5 35 chr9 78665722 78665887 -45410285 - B3 SINE B2 -51 165 1 3 1185 1210 113 32 0 chr9 78666381 78666566 -45409606 - B2_Mm1t SINE B2 -2 191 1 3 1185 25 31 0 0 chr9 78669515 78669547 -45406625 + GC_rich Low_complexity Low_complexity 1 32 0 3 1185 702 210 22 7 chr9 78669775 78669914 -45406258 + B1_Mur3 SINE Alu 9 149 0 3 1185 23 78 0 0 chr9 78670322 78670373 -45405799 + AT_rich Low_complexity Low_complexity 1 51 0 3 1185 23 33 0 0 chr9 78670480 78670510 -45405662 + AT_rich Low_complexity Low_complexity 1 30 0 3 1185 1203 251 185 2 chr9 78670514 78671028 -45405144 + L1MC LINE L1 2358 2965 -3181 3 1185 3052 17 37 3 chr9 78671109 78671464 -45404708 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1185 53063 21 19 1 chr9 78671464 78677825 -45398347 - IAPEz-int LTR ERVK 0 6481 8 3 1185 3052 17 37 3 chr9 78677825 78678180 -45397992 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1185 2047 255 57 50 chr9 78678581 78678907 -45397265 - Lx8 LINE L1 -2 7471 7152 3 1185 1386 93 0 10 chr9 78678907 78679102 -45397070 - B2_Mm2 SINE B2 -2 193 1 3 1185 2047 255 57 50 chr9 78679102 78679461 -45396711 - Lx8 LINE L1 -322 7151 6781 3 1185 4540 56 32 0 chr9 78680021 78680588 -45395584 - L1_Mus1 LINE L1 0 6567 5983 3 1185 735 215 8 0 chr9 78681570 78681700 -45394472 - RSINE1 SINE B4 -29 136 6 3 1185 5921 80 16 0 chr9 78682407 78683244 -45392928 + L1_Mus1 LINE L1 5718 6567 0 3 1185 3589 223 113 18 chr9 78684150 78684587 -45391585 + Lx5 LINE L1 4126 4666 -1220 3 1185 507 73 0 0 chr9 78684587 78684655 -45391517 + (TAA)n Simple_repeat Simple_repeat 2 69 0 3 1185 3589 223 113 18 chr9 78684655 78685343 -45390829 + Lx5 LINE L1 4667 5358 -528 3 1185 2518 139 0 13 chr9 78685343 78685728 -45390444 - RLTR41 LTR ERV1 0 446 67 3 1185 3241 183 36 28 chr9 78685735 78686276 -45389896 + Lx6 LINE L1 5347 5796 -1664 3 1185 270 0 0 0 chr9 78686276 78686306 -45389866 + (CTAA)n Simple_repeat Simple_repeat 3 32 0 3 1185 3241 215 113 110 chr9 78686306 78686888 -45389284 + Lx6 LINE L1 5797 6480 -980 3 1185 2147 191 28 171 chr9 78686888 78687601 -45388571 + RMER19C LTR ERVK 1 611 0 3 1185 3241 215 113 110 chr9 78687601 78687866 -45388306 + Lx6 LINE L1 6481 6744 -716 3 1185 2332 143 6 17 chr9 78687846 78688344 -45387828 + Lx5 LINE L1 5452 5949 -1101 3 1185 2631 180 55 8 chr9 78688344 78688837 -45387335 - RMER20A LTR ERVK 0 516 1 3 1185 4516 200 33 12 chr9 78688838 78689877 -45386295 + Lx5 LINE L1 5945 7036 -14 3 1185 264 59 0 0 chr9 78689877 78689911 -45386261 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 1185 584 195 40 7 chr9 78689948 78690098 -45386074 + Lx7 LINE L1 7541 7695 -1 3 1185 3920 41 0 0 chr9 78690824 78691292 -45384880 - L1_Mus1 LINE L1 0 6567 6100 3 1185 1074 188 8 59 chr9 78691584 78691821 -45384351 - ORR1D1 LTR MaLR -7 367 143 3 1185 360 262 44 37 chr9 78691732 78691867 -45384305 - MT2A LTR ERVL -395 138 3 3 1185 436 143 44 0 chr9 78692044 78692135 -45384037 + (TCTCTG)n Simple_repeat Simple_repeat 4 98 0 3 1185 201 164 44 15 chr9 78692142 78692210 -45383962 + CT-rich Low_complexity Low_complexity 3 72 0 3 1185 629 351 35 35 chr9 78694669 78694958 -45381214 - B4A SINE B4 0 292 4 3 1185 423 0 0 0 chr9 78695553 78695600 -45380572 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1185 777 102 0 0 chr9 78696484 78696602 -45379570 + L1_Mus2 LINE L1 6448 6565 -1 3 1185 3678 121 3 39 chr9 78696657 78697268 -45378904 - L1_Mur2 LINE L1 -21 5856 5268 3 1185 180 0 0 0 chr9 78697268 78697288 -45378884 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 1185 2859 177 36 0 chr9 78697292 78697873 -45378299 + Lx4B LINE L1 5871 6472 -586 3 1185 257 253 44 0 chr9 78697872 78697963 -45378209 + Lx2 LINE L1 6903 6997 0 3 1185 186 43 0 0 chr9 78698553 78698576 -45377596 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1185 386 308 26 79 chr9 78699390 78699619 -45376553 + MER121 Unknown Unknown 3 219 -193 3 1185 306 0 0 0 chr9 78700622 78700656 -45375516 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 3 1185 3782 52 43 0 chr9 78700750 78701234 -45374938 - L1_Mus3 LINE L1 -4 6634 6130 3 1185 444 160 0 0 chr9 78701243 78701362 -45374810 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 3 1185 3377 32 12 12 chr9 78701789 78702200 -45373972 + IAPLTR2a LTR ERVK 1 411 0 3 1185 704 142 0 0 chr9 78703172 78703278 -45372894 + B2_Mm2 SINE B2 2 107 -88 3 1185 227 140 0 20 chr9 78703279 78703330 -45372842 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1185 1637 90 402 5 chr9 78703376 78703757 -45372415 - RLTR47_MM LTR ERV1 0 532 1 3 1185 373 333 141 9 chr9 78704172 78704399 -45371773 - LTR16B LTR ERVL 0 463 207 3 1185 381 22 0 0 chr9 78704418 78704464 -45371708 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 3 1185 588 313 122 14 chr9 78706828 78707042 -45369130 + B4 SINE B4 5 241 -51 3 1185 319 259 255 58 chr9 78708433 78708820 -45367352 - L1MA4 LINE L1 -301 5999 5520 3 1185 507 45 0 0 chr9 78709127 78709193 -45366979 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1185 225 278 51 25 chr9 78709217 78709335 -45366837 - Lx8 LINE L1 -1574 5899 5779 3 1185 467 217 28 0 chr9 78709335 78709441 -45366731 - Lx7 LINE L1 -1975 5721 5613 3 1185 2258 155 64 10 chr9 78709444 78709836 -45366336 + MTC LTR MaLR 1 413 -8 3 1185 1506 309 47 21 chr9 78709840 78710879 -45365293 - Lx7 LINE L1 -269 5611 4539 3 1185 788 189 0 0 chr9 78711173 78711300 -45364872 + B1_Mur4 SINE Alu 3 129 -21 3 1185 376 68 19 11 chr9 78711830 78711895 -45364277 - B1_Mus2 SINE Alu -1 148 86 3 1185 4455 117 61 11 chr9 78711932 78712718 -45363454 - L1_Mur2 LINE L1 -473 5404 4580 3 1185 574 211 17 17 chr9 78712713 78712829 -45363343 + Lx5 LINE L1 6600 6715 -335 3 1185 916 211 57 9 chr9 78712857 78713067 -45363105 + MTD LTR MaLR 1 220 -199 3 1185 212 309 169 27 chr9 78713120 78713303 -45362869 - MIRb SINE MIR -5 263 55 3 1185 320 241 146 22 chr9 78713427 78713516 -45362656 - MLT1A1 LTR MaLR -47 361 262 3 1185 532 326 30 0 chr9 78714153 78714288 -45361884 + RSINE1 SINE B4 8 146 -19 3 1185 255 125 0 0 chr9 78714291 78714331 -45361841 + (TAAG)n Simple_repeat Simple_repeat 4 43 0 3 1185 200 229 0 77 chr9 78714406 78714458 -45361714 - L4 LINE RTE -496 1533 1486 3 1185 2096 174 38 3 chr9 78714550 78714919 -45361253 + RLTR14 LTR ERV1 1 382 0 3 1185 459 299 17 0 chr9 78715126 78715243 -45360929 - B4A SINE B4 -41 251 133 3 1185 548 14 14 0 chr9 78715253 78715322 -45360850 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1185 221 290 14 14 chr9 78715329 78715399 -45360773 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 3 1185 24 53 0 0 chr9 78715404 78715442 -45360730 + AT_rich Low_complexity Low_complexity 1 38 0 3 1185 1032 182 122 31 chr9 78715816 78716071 -45360101 - RMER1C Other Other -53 1289 1012 3 1185 716 33 11 0 chr9 78716071 78716162 -45360010 + (TC)n Simple_repeat Simple_repeat 1 92 0 3 1185 664 230 0 0 chr9 78716176 78716315 -45359857 - RMER1C Other Other -410 932 794 3 1185 2431 39 7 7 chr9 78716545 78716852 -45359320 - L1Md_F3 LINE L1 -2 6582 6276 3 1185 234 0 0 0 chr9 78717606 78717632 -45358540 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 1185 639 252 80 43 chr9 78717961 78718123 -45358049 + B3A SINE B2 2 169 -29 3 1185 405 0 0 0 chr9 78718131 78718176 -45357996 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1185 273 140 0 0 chr9 78718176 78718233 -45357939 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1185 604 335 116 19 chr9 78718770 78719081 -45357091 - LTR40b LTR ERVL -64 398 58 3 1185 221 0 0 33 chr9 78719737 78719767 -45356405 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1185 1595 130 27 0 chr9 78721081 78721342 -45354830 - RLTR31A_Mm LTR ERVK -287 297 30 3 1185 716 207 89 20 chr9 78721344 78721546 -45354626 + Lx3C LINE L1 6729 6944 -32 3 1185 1280 55 6 0 chr9 78721551 78721716 -45354456 + L1_Mus1 LINE L1 6402 6567 0 3 1185 286 177 16 0 chr9 78721912 78721974 -45354198 - B3 SINE B2 0 216 154 3 1185 452 230 56 81 chr9 78723035 78723048 -45353124 - MTD LTR MaLR 0 419 409 3 1185 1453 41 46 5 chr9 78723048 78723244 -45352928 - L1Md_F2 LINE L1 -3 6579 6376 3 1185 452 230 56 81 chr9 78723244 78723391 -45352781 - MTD LTR MaLR -11 408 263 3 1185 182 346 103 28 chr9 78723436 78723543 -45352629 - L2b LINE L2 -19 3356 3242 3 1185 277 370 89 32 chr9 78725437 78725817 -45350355 - L2b LINE L2 -902 2517 2116 3 1185 609 14 0 0 chr9 78726649 78726719 -45349453 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 3 1185 1742 225 37 49 chr9 78726720 78727207 -45348965 - RMER1C Other Other -10 1332 852 3 1185 468 0 0 0 chr9 78727213 78727265 -45348907 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1185 744 172 172 0 chr9 78727265 78727434 -45348738 - Lx4A LINE L1 -16 7042 6845 3 1185 298 245 21 21 chr9 78727435 78727531 -45348641 - MER58D DNA MER1_type -4 382 287 3 1185 279 0 0 0 chr9 78727560 78727591 -45348581 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1185 322 230 0 44 chr9 78727597 78727688 -45348484 - MER53 DNA hAT -82 111 25 3 1185 216 0 0 0 chr9 78729301 78729325 -45346847 + (CTG)n Simple_repeat Simple_repeat 3 26 0 3 1185 226 305 111 74 chr9 78730300 78730597 -45345575 - L1MA6 LINE L1 -2 6298 5991 3 1185 39427 9 0 2 chr9 78730645 78738101 -45338071 - L1Md_A LINE L1 0 6582 1 3 1185 476 314 56 96 chr9 78738110 78738558 -45337614 - L1MB1 LINE L1 -249 5940 5511 4 1185 8961 133 20 5 chr9 78738592 78740785 -45335387 + Lx2 LINE L1 4702 6912 -85 4 1185 2048 41 7 26 chr9 78740785 78741058 -45335114 + L1Md_F3 LINE L1 6316 6583 -1 4 1185 8961 108 20 4 chr9 78741058 78741128 -45335044 + Lx2 LINE L1 6913 6996 -1 4 1185 394 277 7 41 chr9 78741143 78741290 -45334882 - L1M2 LINE L1 -828 5472 5331 4 1185 1130 255 74 21 chr9 78741290 78741644 -45334528 + ORR1D1 LTR MaLR 1 417 -2 4 1185 1458 96 3 0 chr9 78741777 78742102 -45334070 + (TCTA)n Simple_repeat Simple_repeat 1 326 0 4 1185 3677 176 7 18 chr9 78742102 78742715 -45333457 + RMER20B LTR ERVK 11 616 -11 4 1185 805 44 18 0 chr9 78742736 78742850 -45333322 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 4 1185 1977 271 26 14 chr9 78742902 78743478 -45332694 + Lx8 LINE L1 6248 6830 -643 4 1185 455 198 36 0 chr9 78743482 78743593 -45332579 - RMER1C Other Other -2 1340 1226 4 1185 627 218 0 0 chr9 78743593 78743735 -45332437 + CT-rich Low_complexity Low_complexity 3 144 0 4 1185 1064 294 94 36 chr9 78743741 78744189 -45331983 + Lx8 LINE L1 6828 7301 -172 4 1185 532 241 108 56 chr9 78744471 78744739 -45331433 - L1M2 LINE L1 -1017 5126 4845 4 1185 272 243 132 83 chr9 78745237 78745358 -45330814 - LTR86C LTR ERVL -39 582 456 4 1185 361 330 51 65 chr9 78745399 78745616 -45330556 - LTR86C LTR ERVL -381 240 27 4 1185 427 363 98 40 chr9 78746008 78746335 -45329837 + LTR16B1 LTR ERVL 133 478 -2 4 1185 362 305 0 0 chr9 78747328 78747410 -45328762 - ID4_ SINE ID 0 83 2 4 1185 1290 264 18 12 chr9 78749094 78749431 -45326741 - Lx6 LINE L1 -11 7449 7111 4 1185 192 125 0 0 chr9 78749568 78749600 -45326572 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1185 207 0 0 0 chr9 78750153 78750176 -45325996 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1185 1105 285 108 26 chr9 78751936 78752354 -45323818 - MER74C LTR ERVL -7 453 2 4 1185 472 348 127 17 chr9 78752362 78752544 -45323628 - Lx8 LINE L1 -1090 6383 6174 4 1185 459 0 0 0 chr9 78752544 78752595 -45323577 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 1185 472 348 127 17 chr9 78752595 78752947 -45323225 - Lx8 LINE L1 -1300 6173 5791 4 1185 2063 300 62 19 chr9 78752938 78753003 -45323169 + Lx8 LINE L1 6370 6436 -1037 4 1185 2696 180 49 62 chr9 78753003 78753620 -45322552 + RMER19C LTR ERVK 1 609 -2 4 1185 2063 300 62 19 chr9 78753620 78754439 -45321733 + Lx8 LINE L1 6437 7292 -181 4 1185 1112 136 4 101 chr9 78754576 78754813 -45321359 + Lx4B LINE L1 6845 7058 0 4 1185 438 53 0 0 chr9 78755142 78755199 -45320973 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1185 760 288 9 4 chr9 78755199 78755429 -45320743 - Lx8 LINE L1 -499 6974 6744 4 1185 23 0 0 0 chr9 78755723 78755746 -45320426 + AT_rich Low_complexity Low_complexity 1 23 0 4 1185 825 212 141 0 chr9 78755788 78755972 -45320200 + B3 SINE B2 1 210 -6 4 1185 5324 214 35 11 chr9 78756023 78757261 -45318911 - Lx9 LINE L1 -153 7491 6179 4 1185 432 214 23 15 chr9 78757421 78757554 -45318618 - L1_Rod LINE L1 -1073 4774 4641 4 1185 700 253 139 44 chr9 78757732 78758005 -45318167 + MLT1A0 LTR MaLR 59 357 -8 4 1185 1710 37 0 23 chr9 78758568 78758789 -45317383 - L1Md_F2 LINE L1 0 6582 6367 4 1185 267 173 0 119 chr9 78759059 78759118 -45317054 + LTR40a LTR ERVL 3 54 -465 4 1185 216 24 73 0 chr9 78759592 78759633 -45316539 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1185 201 324 17 29 chr9 78760651 78760838 -45315334 + T-rich Low_complexity Low_complexity 1 184 0 4 1185 23 33 0 0 chr9 78761560 78761590 -45314582 + AT_rich Low_complexity Low_complexity 1 30 0 4 1185 4183 212 126 32 chr9 78762167 78762685 -45313487 - RMER12 LTR ERVK -157 1165 769 4 1185 503 90 13 0 chr9 78762685 78762763 -45313409 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 4 1185 4183 202 105 36 chr9 78762763 78763514 -45312658 - RMER12 LTR ERVK -554 768 2 4 1185 225 286 9 75 chr9 78763770 78763876 -45312296 + L1MEf LINE L1 2108 2206 -3994 4 1185 835 289 48 13 chr9 78763874 78764246 -45311926 + L1M2 LINE L1 4740 5124 -756 4 1185 390 42 0 0 chr9 78765885 78765933 -45310239 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 4 1185 4770 104 112 12 chr9 78765933 78767292 -45308880 - Lx3A LINE L1 -16 6965 5445 4 1185 2835 72 0 12 chr9 78767282 78767692 -45308480 + Lx3A LINE L1 5034 5438 -448 4 1185 283 297 80 49 chr9 78767881 78768044 -45308128 + MER3 DNA MER1_type 2 169 -40 4 1185 37 0 0 0 chr9 78768044 78768081 -45308091 + AT_rich Low_complexity Low_complexity 1 37 0 4 1185 5997 66 5 1 chr9 78768211 78768986 -45307186 - L1_Mus3 LINE L1 -7 6631 5854 4 1185 250 202 86 43 chr9 78769182 78769275 -45306897 + MLT1B LTR MaLR 288 384 -6 4 1185 182 65 65 0 chr9 78769308 78769339 -45306833 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 4 1185 906 75 2 0 chr9 78769339 78769468 -45306704 - B1_Mm SINE Alu 0 147 19 4 1185 286 183 14 14 chr9 78770228 78770300 -45305872 + G-rich Low_complexity Low_complexity 3 74 0 4 1185 335 302 141 38 chr9 78772115 78772328 -45303844 + MIR SINE MIR 7 241 -21 4 1185 339 267 0 0 chr9 78772704 78772839 -45303333 + (TG)n Simple_repeat Simple_repeat 2 136 0 4 1185 264 336 82 50 chr9 78773283 78773502 -45302670 - MIRb SINE MIR -12 256 31 4 1185 28 0 0 0 chr9 78773507 78773535 -45302637 + AT_rich Low_complexity Low_complexity 1 28 0 4 1186 567 377 66 27 chr9 78774701 78775186 -45300986 + L1MEf LINE L1 731 1234 -4966 4 1186 348 314 48 0 chr9 78775204 78775309 -45300863 + PB1 SINE Alu 10 119 -8 4 1186 186 103 0 0 chr9 78775326 78775355 -45300817 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 4 1186 344 337 64 37 chr9 78775535 78775862 -45300310 + L1MEf LINE L1 1426 1761 -4439 4 1186 638 175 56 0 chr9 78775968 78776094 -45300078 + RMER19B LTR ERVK 1 133 -769 4 1186 591 40 0 0 chr9 78776143 78776217 -45299955 + (CTAGT)n Simple_repeat Simple_repeat 2 75 0 4 1186 251 197 98 0 chr9 78776624 78776685 -45299487 + MLT1I LTR MaLR 322 388 -23 4 1186 8024 68 6 24 chr9 78777164 78778845 -45297327 - L1Md_F2 LINE L1 -2 6580 4992 4 1186 297 0 0 0 chr9 78778857 78778890 -45297282 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1186 12770 43 1 14 chr9 78778890 78779795 -45296377 - L1Md_F2 LINE L1 -21 6561 5671 4 1186 3728 22 38 32 chr9 78779795 78780267 -45295905 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1186 12770 41 2 5 chr9 78780267 78781695 -45294477 - L1Md_F2 LINE L1 -213 5670 4240 4 1186 1507 226 33 11 chr9 78781790 78782152 -45294020 + ORR1D2 LTR MaLR 1 370 0 4 1186 601 238 149 51 chr9 78783209 78783404 -45292768 + MER20 DNA MER1_type 3 216 -3 4 1186 23 0 0 0 chr9 78783725 78783748 -45292424 + AT_rich Low_complexity Low_complexity 1 23 0 4 1186 634 306 90 26 chr9 78785170 78785857 -45290315 + L1_Rod LINE L1 1207 1937 -3910 4 1186 2759 268 80 48 chr9 78786149 78786461 -45289711 + L1MA4 LINE L1 3079 3398 -2482 4 1186 2310 138 53 41 chr9 78786461 78786876 -45289296 - MTC LTR MaLR -1 420 1 4 1186 2759 268 80 48 chr9 78786876 78787548 -45288624 + L1MA4 LINE L1 3399 4069 -1811 4 1186 634 281 59 0 chr9 78787548 78787751 -45288421 - B3 SINE B2 0 216 2 4 1186 2759 268 80 48 chr9 78787751 78788410 -45287762 + L1MA4 LINE L1 4070 4774 -1106 4 1186 670 235 32 64 chr9 78788465 78788760 -45287412 + L1MA4 LINE L1 5593 5929 -371 4 1186 24 67 0 0 chr9 78788939 78788984 -45287188 + AT_rich Low_complexity Low_complexity 1 45 0 4 1186 534 350 75 55 chr9 78789329 78789713 -45286459 - MER99 DNA hAT? -1 830 439 4 1186 226 155 82 134 chr9 78792221 78792318 -45283854 + RLTR25A LTR ERVK 551 642 -461 4 1186 766 310 18 91 chr9 78792528 78792579 -45283593 + MT2A LTR ERVL 2 52 -481 4 1186 2781 18 0 63 chr9 78792579 78792928 -45283244 + IAPLTR2b LTR ERVK 1 327 0 4 1186 766 310 18 91 chr9 78792928 78793217 -45282955 + MT2A LTR ERVL 53 317 -216 4 1186 333 0 0 0 chr9 78793375 78793412 -45282760 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1186 405 0 0 0 chr9 78793545 78793590 -45282582 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1186 590 179 5 0 chr9 78793593 78793820 -45282352 + (CA)n Simple_repeat Simple_repeat 1 228 0 4 1186 387 291 46 119 chr9 78794096 78794381 -45281791 - MER110A LTR ERV1 -176 292 29 4 1186 1598 36 0 0 chr9 78795073 78795268 -45280904 + L1Md_F2 LINE L1 5392 5586 -297 4 1186 8050 47 7 7 chr9 78795268 78796264 -45279908 + L1Md_F2 LINE L1 5587 6582 0 4 1186 306 0 0 0 chr9 78796312 78796346 -45279826 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1186 207 125 0 0 chr9 78796471 78796511 -45279661 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1186 506 296 14 58 chr9 78796511 78796719 -45279453 + Lx8 LINE L1 6414 6612 -861 4 1186 1593 190 99 39 chr9 78796734 78796991 -45279181 + ORR1C2 LTR MaLR 1 283 -101 4 1186 2573 149 32 32 chr9 78796991 78797457 -45278715 + RMER4A LTR ERVK 1 466 0 4 1186 1593 190 99 39 chr9 78797457 78797561 -45278611 + ORR1C2 LTR MaLR 284 384 0 4 1186 241 231 20 81 chr9 78797622 78797698 -45278474 + Lx8 LINE L1 6727 6799 -674 4 1186 3308 165 119 9 chr9 78797698 78798346 -45277826 + RMER6D LTR ERVK 1 719 -1 4 1186 241 231 20 81 chr9 78798346 78798368 -45277804 + Lx8 LINE L1 6800 6819 -654 4 1186 1541 267 120 19 chr9 78798368 78798983 -45277189 + Lx8 LINE L1 6794 7470 -3 4 1186 1483 188 138 24 chr9 78799047 78799678 -45276494 + Lx5 LINE L1 6348 7050 0 4 1186 2039 21 0 4 chr9 78799845 78800087 -45276085 - L1Md_F3 LINE L1 -14 6570 6330 4 1186 518 236 0 52 chr9 78800622 78800738 -45275434 + RSINE1 SINE B4 41 150 -15 4 1186 298 276 133 33 chr9 78800823 78801002 -45275170 - MIRb SINE MIR -48 220 20 4 1186 25 51 0 0 chr9 78801072 78801111 -45275061 + AT_rich Low_complexity Low_complexity 1 39 0 4 1186 183 129 0 0 chr9 78801190 78801221 -45274951 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 4 1186 1323 194 53 32 chr9 78801868 78802245 -45273927 - L1_Rod LINE L1 -1120 4727 4343 4 1186 2031 226 69 21 chr9 78802221 78802785 -45273387 - Lx9 LINE L1 -110 7534 6944 4 1186 377 90 15 0 chr9 78802795 78802862 -45273310 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 4 1186 232 386 15 36 chr9 78803296 78803433 -45272739 - LTR33 LTR ERVL -145 370 237 4 1186 730 400 56 27 chr9 78803482 78803929 -45272243 - LTR16B2 LTR ERVL -2 460 1 4 1186 225 0 0 0 chr9 78804085 78804110 -45272062 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 1186 1498 264 55 17 chr9 78805438 78805842 -45270330 + MTD LTR MaLR 1 419 0 4 1186 203 304 0 28 chr9 78805843 78805914 -45270258 + GA-rich Low_complexity Low_complexity 1 69 0 4 1186 286 138 62 0 chr9 78805972 78806037 -45270135 + GA-rich Low_complexity Low_complexity 2 70 0 4 1186 537 297 25 13 chr9 78806282 78806439 -45269733 + RSINE1 SINE B4 5 163 -2 4 1186 424 298 180 54 chr9 78807084 78807379 -45268793 - ORR1E LTR MaLR -5 369 38 5 1186 866 305 43 11 chr9 78808051 78808333 -45267839 + B4A SINE B4 1 291 -1 5 1186 500 121 0 11 chr9 78808348 78808440 -45267732 + (CA)n Simple_repeat Simple_repeat 1 91 0 5 1186 1076 50 0 0 chr9 78808911 78809096 -45267076 - L1Md_T LINE L1 0 6582 6442 5 1186 516 219 107 25 chr9 78809164 78809286 -45266886 - B1F SINE Alu -6 143 12 5 1186 393 281 70 56 chr9 78809286 78809301 -45266871 - ID_B1 SINE B4 0 191 80 5 1186 3110 32 64 3 chr9 78809382 78809759 -45266413 + MTB LTR MaLR 1 400 0 5 1186 474 33 0 0 chr9 78810015 78810075 -45266097 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1186 278 313 150 90 chr9 78810088 78810288 -45265884 - B4 SINE B4 -11 281 70 5 1186 3095 83 2 5 chr9 78810439 78810860 -45265312 - L1Md_F2 LINE L1 -1 6581 6162 5 1186 192 77 0 0 chr9 78811196 78811222 -45264950 + (CATA)n Simple_repeat Simple_repeat 2 27 0 5 1186 462 368 13 32 chr9 78811257 78811283 -45264889 - RSINE1 SINE B4 -11 154 134 5 1186 414 129 0 0 chr9 78811283 78811368 -45264804 + (TCTG)n Simple_repeat Simple_repeat 2 86 0 5 1186 462 368 13 32 chr9 78811368 78811498 -45264674 - RSINE1 SINE B4 -32 133 2 5 1186 216 292 154 0 chr9 78811499 78811564 -45264608 - MER5A DNA MER1_type -113 76 2 5 1186 689 186 18 116 chr9 78811708 78811765 -45264407 - B1_Mur2 SINE Alu -1 148 109 5 1186 1658 126 34 0 chr9 78811765 78812028 -45264144 - Lx2A1 LINE L1 0 7008 6737 5 1186 689 186 18 116 chr9 78812028 78812134 -45264038 - B1_Mur2 SINE Alu -41 108 1 5 1186 24 0 0 0 chr9 78812134 78812158 -45264014 + AT_rich Low_complexity Low_complexity 1 24 0 5 1186 23 0 0 0 chr9 78813997 78814020 -45262152 + AT_rich Low_complexity Low_complexity 1 23 0 5 1186 2034 239 19 89 chr9 78814246 78814979 -45261193 - Lx7 LINE L1 -6 7690 7009 5 1186 21 0 0 0 chr9 78815153 78815174 -45260998 + AT_rich Low_complexity Low_complexity 1 21 0 5 1186 614 169 106 85 chr9 78815404 78815452 -45260720 - Lx LINE L1 -4 6650 6610 5 1186 2473 90 54 8 chr9 78815452 78815821 -45260351 - Lx3_Mus LINE L1 -11 6998 6613 5 1186 614 169 106 85 chr9 78815821 78815894 -45260278 - Lx LINE L1 -45 6609 6519 5 1186 225 0 0 0 chr9 78815894 78815919 -45260253 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 5 1186 614 169 106 85 chr9 78815919 78815984 -45260188 - Lx LINE L1 -136 6518 6459 5 1186 3024 14 0 36 chr9 78815985 78816344 -45259828 + ORR1A0 LTR MaLR 1 346 0 5 1186 269 220 0 20 chr9 78816346 78816397 -45259775 - Lx7 LINE L1 -700 6996 6947 5 1186 1928 121 3 6 chr9 78816400 78816724 -45259448 + L1_Mm LINE L1 4514 4836 -1047 5 1186 527 323 68 38 chr9 78816858 78817541 -45258631 - L1M4c LINE L1 -3129 2987 2315 5 1186 469 338 91 54 chr9 78817635 78818151 -45258021 - L1M4c LINE L1 -4559 1825 1291 5 1186 39 0 0 0 chr9 78818426 78818465 -45257707 + AT_rich Low_complexity Low_complexity 1 39 0 5 1186 585 285 124 62 chr9 78818554 78819007 -45257165 - RLTR12B LTR ERVK -47 481 1 5 1186 5266 225 126 81 chr9 78819011 78819066 -45257106 - MYSERV-int LTR ERVK -5 6545 6495 5 1186 2408 65 3 0 chr9 78819066 78819375 -45256797 + L1_Mus1 LINE L1 6258 6567 0 5 1186 5266 225 126 81 chr9 78819375 78821511 -45254661 - MYSERV-int LTR ERVK -56 6494 4255 5 1186 465 19 0 0 chr9 78821513 78821567 -45254605 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1186 385 216 62 0 chr9 78821571 78821668 -45254504 + MYSERV-int LTR ERVK 5082 5184 -1366 5 1186 203 369 0 0 chr9 78821682 78821747 -45254425 + (TCTCTG)n Simple_repeat Simple_repeat 1 65 0 5 1186 7973 28 1 4 chr9 78821786 78823018 -45253154 - L1Md_A LINE L1 -1 6581 5354 5 1186 991 244 77 24 chr9 78823033 78823369 -45252803 - MYSERV-int LTR ERVK -2384 4166 3813 5 1186 237 132 0 0 chr9 78823453 78823491 -45252681 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 5 1186 336 273 50 28 chr9 78823491 78823672 -45252500 - Lx8 LINE L1 -55 7418 7234 5 1186 23 78 0 0 chr9 78824473 78824524 -45251648 + AT_rich Low_complexity Low_complexity 1 51 0 5 1186 21 0 0 0 chr9 78825482 78825503 -45250669 + AT_rich Low_complexity Low_complexity 1 21 0 5 1186 1366 228 11 17 chr9 78825503 78825856 -45250316 - Lx2A1 LINE L1 0 7008 6658 5 1186 1800 181 17 8 chr9 78825852 78826203 -45249969 + Lx2B LINE L1 6284 6637 -363 5 1186 2908 153 10 18 chr9 78826344 78826850 -45249322 + RMER5 LTR ERV1 3 504 -30 5 1186 23 0 0 0 chr9 78827304 78827327 -45248845 + AT_rich Low_complexity Low_complexity 1 23 0 5 1186 282 184 0 0 chr9 78827452 78827501 -45248671 + RMER1B Other Other 612 660 -406 5 1186 4000 105 28 2 chr9 78827501 78828083 -45248089 - MT2B LTR ERVL -4 597 1 5 1186 959 214 131 0 chr9 78828083 78828312 -45247860 + RMER1B Other Other 656 839 -227 5 1186 225 360 0 0 chr9 78828450 78828536 -45247636 + RMER1C Other Other 34 119 -1223 5 1186 2533 229 31 42 chr9 78828596 78829269 -45246903 + RMER1C Other Other 675 1340 -2 5 1186 459 0 0 0 chr9 78829363 78829414 -45246758 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 5 1186 620 88 26 9 chr9 78829972 78830087 -45246085 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 5 1186 413 281 119 10 chr9 78830273 78830568 -45245604 - L1ME2z LINE L1 -497 5947 5621 5 1186 591 99 0 0 chr9 78832488 78832589 -45243583 + (CAG)n Simple_repeat Simple_repeat 1 101 0 5 1186 812 323 42 0 chr9 78834061 78834324 -45241848 - B4A SINE B4 -16 276 3 5 1186 261 225 62 12 chr9 78834610 78834691 -45241481 + Kanga1a DNA Tc2 631 715 -39 5 1186 387 0 0 0 chr9 78834829 78834872 -45241300 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1186 369 0 0 0 chr9 78834872 78834912 -45241260 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1186 195 370 70 61 chr9 78836501 78836616 -45239556 - L2a LINE L2 -25 3401 3286 5 1186 22 0 0 0 chr9 78838583 78838605 -45237567 + AT_rich Low_complexity Low_complexity 1 22 0 5 1186 395 321 120 23 chr9 78840075 78840292 -45235880 + MLT1F1 LTR MaLR 328 565 -4 5 1186 2071 105 114 3 chr9 78840588 78840940 -45235232 - Lx LINE L1 -6 6648 6258 5 1186 360 266 122 61 chr9 78841602 78841782 -45234390 - LTR82B Low_complexity ERVL -478 352 162 5 1186 234 313 19 57 chr9 78842129 78842234 -45233938 - MER76 LTR ERVL -489 202 102 5 1186 570 15 0 0 chr9 78843218 78843285 -45232887 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1186 954 295 32 76 chr9 78843758 78844128 -45232044 - ORR1E LTR MaLR -5 354 1 5 1186 295 262 0 36 chr9 78844623 78844706 -45231466 + CT-rich Low_complexity Low_complexity 1 80 0 5 1186 396 0 0 0 chr9 78846072 78846116 -45230056 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1186 395 300 131 45 chr9 78846397 78846596 -45229576 - ID_B1 SINE B4 -4 220 5 5 1186 1166 276 90 21 chr9 78847087 78847520 -45228652 - Lx7 LINE L1 -570 7126 6664 5 1186 269 268 0 0 chr9 78847580 78847662 -45228510 + T-rich Low_complexity Low_complexity 1 82 0 5 1186 782 55 0 0 chr9 78847669 78847778 -45228394 - L1_Mus2 LINE L1 0 6566 6458 5 1186 2145 77 0 0 chr9 78847778 78848052 -45228120 - L1_Mus2 LINE L1 -288 6278 6005 5 1186 233 307 34 0 chr9 78848053 78848141 -45228031 + Lx7 LINE L1 7591 7681 -15 5 1186 271 60 20 20 chr9 78848593 78848644 -45227528 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1186 372 22 0 0 chr9 78849367 78849412 -45226760 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1186 253 267 62 97 chr9 78851337 78851366 -45224806 - L1M2 LINE L1 -2373 3770 3735 5 1186 185 0 40 0 chr9 78851366 78851391 -45224781 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1186 253 267 62 97 chr9 78851391 78851506 -45224666 - L1M2 LINE L1 -2409 3734 3632 5 1186 215 314 0 0 chr9 78852612 78852663 -45223509 - ID2 SINE ID -5 78 28 5 1186 25 0 0 0 chr9 78852974 78852999 -45223173 + AT_rich Low_complexity Low_complexity 1 25 0 5 1186 288 247 177 37 chr9 78852999 78853010 -45223162 - YREP_Mm Unknown Unknown -1477 335 284 5 1186 475 284 31 16 chr9 78853010 78853139 -45223033 + ID_B1 SINE B4 80 210 -14 5 1186 288 247 177 37 chr9 78853139 78853163 -45223009 - YREP_Mm Unknown Unknown -1477 283 149 5 1186 4481 51 0 3 chr9 78853198 78853860 -45222312 - L1Md_F2 LINE L1 -446 6136 5477 5 1186 2917 80 0 0 chr9 78853860 78854248 -45221924 + L1Md_F2 LINE L1 6183 6570 -12 5 1186 1506 271 48 8 chr9 78854342 78854892 -45221280 + L1_Mur3 LINE L1 3611 4161 -1982 5 1186 37 81 0 0 chr9 78854892 78854978 -45221194 + AT_rich Low_complexity Low_complexity 1 86 0 5 1186 279 106 42 50 chr9 78855138 78855257 -45220915 + (TATAA)n Simple_repeat Simple_repeat 5 122 0 5 1186 201 115 63 13 chr9 78855317 78855396 -45220776 + (TA)n Simple_repeat Simple_repeat 1 83 0 5 1186 991 312 112 54 chr9 78855417 78856518 -45219654 + L1_Mur3 LINE L1 4146 5310 -570 5 1186 285 195 65 0 chr9 78856603 78856680 -45219492 + Lx9 LINE L1 6165 6246 -1398 5 1186 3603 231 80 28 chr9 78856720 78857652 -45218520 + Lx9 LINE L1 6495 7518 -126 5 1186 534 31 0 0 chr9 78857652 78857716 -45218456 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1186 373 197 57 57 chr9 78857716 78857839 -45218333 + Lx9 LINE L1 7519 7643 -1 5 1186 874 289 53 32 chr9 78857826 78858247 -45217925 + L1_Rod LINE L1 5289 5724 -162 5 1186 1900 259 36 19 chr9 78858229 78858757 -45217415 + Lx8 LINE L1 6579 7115 -358 5 1186 608 226 40 20 chr9 78859592 78859774 -45216398 + B3 SINE B2 1 192 -3 5 1186 24 32 0 0 chr9 78861329 78861360 -45214812 + AT_rich Low_complexity Low_complexity 1 31 0 5 1186 428 248 143 18 chr9 78861370 78861532 -45214640 - B3A SINE B2 -13 203 27 5 1186 299 218 128 0 chr9 78861522 78861600 -45214572 - B3A SINE B2 -106 92 5 5 1186 226 250 0 0 chr9 78862075 78862127 -45214045 - MLT1F1 LTR MaLR -2 546 495 5 1186 346 309 0 10 chr9 78862205 78862303 -45213869 - MLT1F1 LTR MaLR -170 399 303 5 1186 437 276 86 8 chr9 78862320 78862448 -45213724 - B1_Mur1 SINE Alu -9 140 3 5 1186 1400 315 69 38 chr9 78862771 78863448 -45212724 - Lx8 LINE L1 -3 7470 6769 5 1186 1702 141 94 56 chr9 78863448 78863808 -45212364 + ORR1D1 LTR MaLR 1 374 0 5 1186 1400 315 69 38 chr9 78863808 78863873 -45212299 - Lx8 LINE L1 -705 6768 6705 5 1186 208 289 169 32 chr9 78865573 78865727 -45210445 - L2 LINE L2 -852 2567 2393 5 1186 320 302 157 30 chr9 78865734 78866032 -45210140 - MLT1E3 LTR MaLR -4 650 302 5 1186 230 315 27 14 chr9 78866031 78866105 -45210067 - MLT1E3 LTR MaLR -548 105 31 5 1186 10230 79 14 8 chr9 78868303 78869687 -45206485 - Lx3_Mus LINE L1 0 7009 5618 5 1186 198 0 0 0 chr9 78870718 78870740 -45205432 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1186 3726 140 21 11 chr9 78870905 78871528 -45204644 - Lx2B LINE L1 0 7000 6372 5 1186 4191 154 16 6 chr9 78871529 78872255 -45203917 - L1_Mur1 LINE L1 -9 5877 5144 5 1186 832 326 68 35 chr9 78872281 78873119 -45203053 - L1M2 LINE L1 -2565 3578 2713 5 1186 269 283 10 29 chr9 78873250 78873352 -45202820 + L1M1 LINE L1 5791 5890 -413 6 1186 563 288 33 78 chr9 78874153 78874461 -45201711 - MLT1B LTR MaLR 0 390 42 6 1186 3210 55 55 0 chr9 78874461 78874883 -45201289 - L1_Mus1 LINE L1 0 6567 6123 6 1186 387 289 77 86 chr9 78874883 78874925 -45201247 - MLT1B LTR MaLR -349 41 1 6 1186 25 31 0 0 chr9 78876449 78876481 -45199691 + AT_rich Low_complexity Low_complexity 1 32 0 6 1186 180 77 0 0 chr9 78876745 78876771 -45199401 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1186 261 0 0 0 chr9 78877625 78877654 -45198518 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1186 189 0 0 0 chr9 78878281 78878302 -45197870 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1186 766 233 36 76 chr9 78878308 78878531 -45197641 - Lx6 LINE L1 -16 7444 7231 6 1186 1458 238 66 72 chr9 78880022 78880506 -45195666 - Lx7 LINE L1 -4 7692 7212 6 1186 2147 237 9 5 chr9 78880505 78880938 -45195234 - Lx7 LINE L1 -1061 6635 6201 6 1186 303 285 103 4 chr9 78881986 78882123 -45194049 + B1_Mm SINE Alu 3 148 0 6 1186 440 265 41 0 chr9 78882026 78882124 -45194048 + ID_B1 SINE B4 122 223 -1 6 1186 338 303 57 0 chr9 78882287 78882409 -45193763 - L1MC4 LINE L1 -672 7370 7242 6 1186 260 253 23 11 chr9 78882418 78882506 -45193666 - L1MC4 LINE L1 -966 7076 6988 6 1186 892 233 38 14 chr9 78884011 78884146 -45192026 - ID_B1 SINE B4 -6 218 83 6 1186 240 59 0 0 chr9 78884146 78884180 -45191992 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1186 892 233 38 14 chr9 78884180 78884253 -45191919 - ID SINE ID -142 82 5 6 1186 262 253 16 169 chr9 78885966 78886112 -45190060 + L2a LINE L2 3248 3425 -1 6 1186 1034 202 4 13 chr9 78886454 78886685 -45189487 - L1_Mur3 LINE L1 -1809 4071 3843 6 1186 477 0 0 0 chr9 78887823 78887876 -45188296 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 6 1186 669 111 10 0 chr9 78887972 78888071 -45188101 - Lx9 LINE L1 -233 7411 7312 6 1186 552 162 305 0 chr9 78888074 78888241 -45187931 + Lx9 LINE L1 7425 7642 -2 6 1186 732 236 19 5 chr9 78888778 78888987 -45187185 + L1MA5 LINE L1 6048 6259 -41 6 1186 423 0 0 0 chr9 78889125 78889172 -45187000 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1186 282 275 21 21 chr9 78889230 78889323 -45186849 + CT-rich Low_complexity Low_complexity 3 95 0 6 1186 3757 127 7 7 chr9 78890702 78891265 -45184907 + Lx4A LINE L1 6495 7057 -1 6 1186 216 60 19 57 chr9 78891266 78891319 -45184853 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 6 1186 300 302 38 57 chr9 78891321 78891479 -45184693 + RMER10B LTR ERVL 242 396 -2 6 1186 205 192 8 53 chr9 78892449 78892581 -45183591 + CT-rich Low_complexity Low_complexity 4 129 0 6 1186 642 300 124 79 chr9 78894897 78895131 -45181041 + L1MA5 LINE L1 1219 1435 -4445 6 1186 483 18 0 0 chr9 78895131 78895187 -45180985 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1186 642 300 124 79 chr9 78895187 78895929 -45180243 + L1MA5 LINE L1 1436 2239 -3641 6 1186 2521 271 76 58 chr9 78895963 78897556 -45178616 + L1MA5 LINE L1 2517 4138 -1742 6 1186 1727 187 13 10 chr9 78897558 78897871 -45178301 - ORR1B2 LTR MaLR -38 329 16 6 1186 1254 227 66 14 chr9 78897871 78898262 -45177910 + L1MA5 LINE L1 5059 5503 -797 6 1186 237 350 138 13 chr9 78898750 78898909 -45177263 - B4A SINE B4 -7 285 107 6 1186 493 264 68 20 chr9 78898913 78899060 -45177112 + RLTR28B LTR ERVL 1 154 -327 6 1186 4289 80 5 48 chr9 78899304 78899936 -45176236 - L1_Mus2 LINE L1 0 6566 5962 6 1186 330 299 132 51 chr9 78901087 78901527 -45174645 + L1MA5 LINE L1 5821 6293 -7 6 1186 1556 281 142 18 chr9 78901558 78902073 -45174099 + MTE-int LTR MaLR 998 1576 -4 6 1186 1322 270 44 0 chr9 78902099 78902417 -45173755 + MTEa LTR MaLR 48 379 0 6 1186 432 0 0 0 chr9 78902454 78902502 -45173670 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1186 243 146 0 0 chr9 78902596 78902637 -45173535 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1186 486 0 0 0 chr9 78902849 78902903 -45173269 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1186 4961 67 10 4 chr9 78902903 78903937 -45172235 + L1VL4 LINE L1 269 1310 -2249 6 1186 1344 65 179 5 chr9 78903937 78904155 -45172017 + MTB LTR MaLR 145 400 0 6 1186 283 254 55 16 chr9 78904332 78904460 -45171712 + L1MD3 LINE L1 7367 7499 -496 6 1186 260 314 134 20 chr9 78904496 78904743 -45171429 + L1MD3 LINE L1 7719 7993 -2 6 1187 882 29 0 0 chr9 78906793 78906898 -45169274 + (TTC)n Simple_repeat Simple_repeat 3 107 0 6 1187 513 84 0 0 chr9 78906898 78906969 -45169203 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1187 1479 293 65 18 chr9 78907741 78908346 -45167826 - Lx8 LINE L1 -2 7471 6839 6 1187 335 345 60 6 chr9 78908724 78908890 -45167282 + MamSINE1 SINE tRNA 50 224 -66 6 1187 21 36 0 0 chr9 78909825 78909853 -45166319 + AT_rich Low_complexity Low_complexity 1 28 0 6 1187 24 53 0 0 chr9 78910020 78910058 -45166114 + AT_rich Low_complexity Low_complexity 1 38 0 6 1187 312 290 50 9 chr9 78910729 78910860 -45165312 - MER5A1 DNA MER1_type 0 166 27 6 1187 270 309 96 0 chr9 78910860 78910954 -45165218 - MLT1A0 LTR MaLR 0 365 263 6 1187 218 105 0 26 chr9 78910977 78911016 -45165156 + (TCC)n Simple_repeat Simple_repeat 3 40 0 6 1187 506 330 35 35 chr9 78911025 78911257 -45164915 - MLT1A0 LTR MaLR -127 238 7 6 1187 1741 194 62 14 chr9 78912677 78913195 -45162977 - Lx2B LINE L1 -11 6986 6387 6 1187 609 134 31 14 chr9 78913532 78913679 -45162493 + L1_Mm LINE L1 2596 2756 -3127 6 1187 2532 79 114 0 chr9 78913870 78914239 -45161933 + IAPLTR2a LTR ERVK 1 411 0 6 1187 465 114 49 99 chr9 78914241 78914389 -45161783 + IAPEz-int LTR ERVK 3 123 -6358 6 1187 229 267 0 0 chr9 78914389 78914434 -45161738 + RLTR27 LTR ERVK 231 275 -34 6 1187 3816 78 24 22 chr9 78914434 78915087 -45161085 + IAPEz-int LTR ERVK 67 662 -5819 6 1187 2385 70 33 3 chr9 78915087 78915419 -45160753 + IAPEz-int LTR ERVK 1359 1700 -4781 6 1187 6519 35 4 17 chr9 78915412 78916254 -45159918 + IAPEz-int LTR ERVK 5651 6481 0 6 1187 2507 81 114 0 chr9 78916254 78916623 -45159549 + IAPLTR2a LTR ERVK 1 411 0 6 1187 2919 251 79 29 chr9 78916725 78916878 -45159294 - Lx9 LINE L1 -161 7483 7315 6 1187 878 73 8 0 chr9 78916878 78917001 -45159171 + (TTTTC)n Simple_repeat Simple_repeat 2 125 0 6 1187 2919 251 79 29 chr9 78917001 78917822 -45158350 - Lx9 LINE L1 -330 7314 6461 6 1187 719 222 0 40 chr9 78917869 78918019 -45158153 - B1_Mur1 SINE Alu 0 149 6 6 1187 233 216 157 0 chr9 78917997 78918048 -45158124 - MT2C_Mm LTR ERVL -243 232 174 6 1187 234 0 0 0 chr9 78918232 78918258 -45157914 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 6 1187 453 36 0 0 chr9 78918264 78918319 -45157853 + (GGAAA)n Simple_repeat Simple_repeat 5 59 0 6 1187 221 351 108 6 chr9 78919380 78919546 -45156626 - MIR SINE MIR -67 195 13 6 1187 778 329 53 79 chr9 78919908 78920437 -45155735 + MER119 DNA MER1_type 40 554 -29 6 1187 1699 120 0 173 chr9 78920918 78921341 -45154831 - L1Md_A LINE L1 -1 6581 6232 6 1187 194 208 19 0 chr9 78922100 78922153 -45154019 + CT-rich Low_complexity Low_complexity 2 55 0 6 1187 2205 208 83 19 chr9 78922154 78922931 -45153241 - RMER1B Other Other -11 1055 183 6 1187 479 55 0 40 chr9 78923101 78923177 -45152995 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1187 640 378 5 14 chr9 78923439 78923646 -45152526 + B4A SINE B4 2 206 -86 6 1187 711 35 0 0 chr9 78923698 78923784 -45152388 + (GA)n Simple_repeat Simple_repeat 2 87 0 6 1187 354 288 65 43 chr9 78923837 78923975 -45152197 + B4 SINE B4 66 206 -86 6 1187 607 159 15 8 chr9 78923863 78923987 -45152185 + B1_Mus1 SINE Alu 7 133 -16 6 1187 401 263 49 42 chr9 78924292 78924435 -45151737 + MLT1A LTR MaLR 191 334 -40 6 1187 281 336 49 66 chr9 78924441 78924667 -45151505 + RMER5 LTR ERV1 1 222 -312 6 1187 993 222 76 119 chr9 78924776 78925170 -45151002 + MTE2a LTR MaLR 1 377 -2 6 1187 2752 58 9 0 chr9 78925710 78926053 -45150119 - ORR1A1 LTR MaLR 0 346 1 6 1187 382 114 29 0 chr9 78926346 78926553 -45149619 + (TA)n Simple_repeat Simple_repeat 1 212 0 6 1187 282 29 0 0 chr9 78926584 78926619 -45149553 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 6 1187 511 181 64 37 chr9 78926645 78926754 -45149418 + RMER6C LTR ERVK 8 119 -571 6 1187 1005 242 62 55 chr9 78926837 78927261 -45148911 - BGLII_B LTR ERVK -255 437 19 6 1187 206 239 0 14 chr9 78927289 78927361 -45148811 + T-rich Low_complexity Low_complexity 5 75 0 6 1187 321 326 53 0 chr9 78927364 78927496 -45148676 - B1F SINE Alu -6 143 5 6 1187 317 250 26 26 chr9 78927497 78927612 -45148560 + L1MC3 LINE L1 6731 6845 -940 6 1187 600 156 0 0 chr9 78927620 78927729 -45148443 + GA-rich Low_complexity Low_complexity 1 109 0 6 1187 614 231 226 4 chr9 78927744 78928001 -45148171 + L1MC3 LINE L1 7342 7655 -130 6 1187 536 220 78 18 chr9 78928015 78928233 -45147939 - Lx9 LINE L1 -5 7639 7409 6 1187 790 261 45 0 chr9 78928230 78928452 -45147720 + Lx9 LINE L1 6707 6938 -706 6 1187 463 287 156 23 chr9 78928491 78928748 -45147424 + Lx9 LINE L1 7101 7391 -253 6 1187 264 292 47 73 chr9 78929227 78929460 -45146712 + ALINE LINE RTE 102 328 -289 6 1187 262 363 58 22 chr9 78929730 78929868 -45146304 + MER5A DNA MER1_type 7 149 -40 6 1187 236 380 124 32 chr9 78930365 78930550 -45145622 + MIR SINE MIR 18 219 -43 6 1187 417 304 8 51 chr9 78930817 78930935 -45145237 - PB1D9 SINE Alu -3 117 5 6 1187 9758 126 27 6 chr9 78931011 78932883 -45143289 + Lx3B LINE L1 4196 6114 -859 6 1187 3637 90 38 52 chr9 78932883 78933458 -45142714 + RMER2 LTR ERV1 1 567 0 6 1187 8015 129 26 24 chr9 78933458 78934335 -45141837 + Lx3B LINE L1 6115 6973 0 6 1187 449 262 93 88 chr9 78934552 78934757 -45141415 + RMER2 LTR ERV1 334 539 -28 6 1187 21 36 0 0 chr9 78935049 78935077 -45141095 + AT_rich Low_complexity Low_complexity 1 28 0 6 1187 23 54 0 0 chr9 78935506 78935543 -45140629 + AT_rich Low_complexity Low_complexity 1 37 0 6 1187 259 120 0 0 chr9 78935992 78936042 -45140130 - MusHAL1 LINE L1 -334 2378 2329 6 1187 2322 62 10 0 chr9 78936042 78936383 -45139789 + L1_Mus1 LINE L1 6260 6567 0 6 1187 183 262 79 56 chr9 78936455 78936544 -45139628 + L3 LINE CR1 3670 3760 -729 6 1187 509 199 21 7 chr9 78936736 78936878 -45139294 + (TA)n Simple_repeat Simple_repeat 2 145 0 6 1187 13216 156 40 10 chr9 78937015 78940093 -45136079 - Lx5 LINE L1 -372 6678 3480 6 1187 483 18 0 0 chr9 78940093 78940149 -45136023 + (CCCCCT)n Simple_repeat Simple_repeat 1 56 0 6 1187 885 100 0 0 chr9 78940153 78940283 -45135889 + (TTC)n Simple_repeat Simple_repeat 1 130 0 6 1187 225 0 0 0 chr9 78940285 78940310 -45135862 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1187 13216 143 29 7 chr9 78940310 78940418 -45135754 - Lx5 LINE L1 -2398 3479 3372 6 1187 8047 24 4 0 chr9 78940467 78941857 -45134315 - L1Md_T LINE L1 -5 6577 5184 6 1187 5843 65 12 12 chr9 78941857 78942668 -45133504 - IAPEz-int LTR ERVK -20 6461 5651 7 1187 10507 61 40 37 chr9 78942661 78944189 -45131983 - IAPEz-int LTR ERVK -4781 1700 168 7 1187 248 302 0 0 chr9 78944189 78944242 -45131930 - RLTR27 LTR ERVK -34 275 223 7 1187 874 104 26 104 chr9 78944242 78944435 -45131737 - IAPEz-int LTR ERVK -6286 195 18 7 1187 364 55 0 0 chr9 78944433 78944488 -45131684 - IAPEz-int LTR ERVK -1930 57 3 7 1187 3451 33 118 0 chr9 78944490 78944915 -45131257 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1187 8787 24 0 7 chr9 78944915 78945244 -45130928 - L1_Mm LINE L1 -690 5193 4870 7 1187 3418 30 2 0 chr9 78945244 78945639 -45130533 - MTA_Mm LTR MaLR 0 396 1 7 1187 9260 31 3 1 chr9 78945639 78946735 -45129437 - MTA_Mm-int LTR MaLR 0 1098 1 7 1187 3378 38 2 0 chr9 78946735 78947130 -45129042 - MTA_Mm LTR MaLR 0 396 1 7 1187 8787 24 0 7 chr9 78947130 78947894 -45128278 - L1_Mm LINE L1 -1014 4869 4108 7 1187 10688 28 1 0 chr9 78947893 78949240 -45126932 + L1_Mm LINE L1 2771 4118 -1765 7 1187 258 316 90 8 chr9 78950005 78950139 -45126033 - L1MEg1 LINE L1 -5759 476 332 7 1187 378 0 0 0 chr9 78950246 78950288 -45125884 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1187 318 299 88 138 chr9 78950598 78950757 -45125415 - MLT1D-int LTR MaLR -6 1403 1253 7 1187 423 0 0 0 chr9 78950856 78950903 -45125269 + (T)n Simple_repeat Simple_repeat 1 47 0 7 1187 251 361 41 32 chr9 78951150 78951163 -45125009 - B1F1 SINE Alu -21 128 5 7 1187 289 302 18 36 chr9 78951163 78951273 -45124899 - ID_B1 SINE B4 -31 193 86 7 1187 405 0 0 0 chr9 78951292 78951337 -45124835 + (CAA)n Simple_repeat Simple_repeat 2 46 0 7 1187 284 336 98 81 chr9 78951466 78951997 -45124175 - MLT1D-int LTR MaLR -964 525 1 7 1187 920 272 186 36 chr9 78951997 78952430 -45123742 - MLT1D LTR MaLR 0 680 8 7 1187 324 0 0 0 chr9 78955068 78955104 -45121068 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1187 482 319 7 14 chr9 78955182 78955322 -45120850 + ID_B1 SINE B4 81 219 -5 7 1187 27 0 0 0 chr9 78956317 78956344 -45119828 + AT_rich Low_complexity Low_complexity 1 27 0 7 1187 4419 60 0 0 chr9 78956822 78957368 -45118804 + L1_Mus1 LINE L1 6020 6565 -2 7 1187 180 0 0 0 chr9 78957926 78957946 -45118226 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1187 1032 87 0 0 chr9 78958024 78958173 -45117999 + (TG)n Simple_repeat Simple_repeat 1 149 0 7 1187 462 159 0 0 chr9 78958391 78958479 -45117693 + (TA)n Simple_repeat Simple_repeat 2 89 0 7 1187 1409 193 32 40 chr9 78958527 78959010 -45117162 + RLTR12A LTR ERVK 1 359 0 7 1187 379 273 103 8 chr9 78959011 78959288 -45116884 - L1MA5 LINE L1 -118 6182 5870 7 1187 557 268 87 29 chr9 78959293 78959822 -45116350 - L1MA5 LINE L1 -817 5483 4916 7 1187 379 407 47 14 chr9 78960241 78960520 -45115652 - MamSINE1 SINE tRNA -1 289 2 7 1187 2508 107 78 48 chr9 78960718 78961179 -45114993 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1187 5736 34 12 19 chr9 78961181 78961930 -45114242 - IAPEz-int LTR ERVK -2 6479 5736 7 1187 2092 72 0 0 chr9 78961929 78962207 -45113965 - IAPEz-int LTR ERVK -4845 1636 1359 7 1187 3217 57 23 16 chr9 78962209 78962773 -45113399 - IAPEz-int LTR ERVK -5821 660 168 7 1187 248 302 0 0 chr9 78962773 78962826 -45113346 - RLTR27 LTR ERVK -34 275 223 7 1187 1001 102 10 88 chr9 78962826 78963020 -45113152 - IAPEz-int LTR ERVK -6286 195 17 7 1187 269 51 0 0 chr9 78963022 78963061 -45113111 - IAPEz-int LTR ERVK -1936 51 13 7 1187 346 93 0 0 chr9 78963092 78963146 -45113026 - IAPEz-int LTR ERVK -1931 56 3 7 1187 2452 100 78 82 chr9 78963148 78963625 -45112547 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1187 22 0 0 0 chr9 78963703 78963725 -45112447 + AT_rich Low_complexity Low_complexity 1 22 0 7 1187 330 229 0 24 chr9 78963826 78963951 -45112221 + CT-rich Low_complexity Low_complexity 3 124 0 7 1187 816 147 7 77 chr9 78963966 78964121 -45112051 - B1_Mur3 SINE Alu -5 144 1 7 1187 270 136 0 0 chr9 78965223 78965267 -45110905 + (GGA)n Simple_repeat Simple_repeat 3 46 0 7 1187 4999 189 58 7 chr9 78965662 78966705 -45109467 - Lx5 LINE L1 -1 7049 5953 7 1187 2901 139 1 24 chr9 78966699 78967335 -45108837 + Lx5 LINE L1 5346 5968 -1082 7 1187 4154 42 6 2 chr9 78968328 78968831 -45107341 + L1Md_F3 LINE L1 6066 6570 -14 7 1187 703 199 0 35 chr9 78969514 78969655 -45106517 + B1_Mur4 SINE Alu 2 137 -13 7 1187 210 37 0 0 chr9 78969657 78969684 -45106488 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 7 1187 889 252 143 32 chr9 78969716 78969995 -45106177 - MTEa LTR MaLR -4 375 66 7 1187 2666 298 99 40 chr9 78970007 78970994 -45105178 - MTEa-int LTR MaLR -518 1062 18 7 1187 1374 268 24 29 chr9 78971008 78971389 -45104783 - MTEa LTR MaLR 0 379 1 7 1187 522 331 100 34 chr9 78971435 78971704 -45104468 + MER82 DNA MER2_type 51 337 -316 7 1187 1143 68 0 7 chr9 78971717 78971865 -45104307 - B1_Mus2 SINE Alu 0 147 1 7 1187 3409 128 133 11 chr9 78972030 78972685 -45103487 - Lx2B LINE L1 -5 6995 6261 7 1187 421 309 106 6 chr9 78972686 78972865 -45103307 + MER82 DNA MER2_type 453 649 -4 7 1187 720 0 0 0 chr9 78973584 78973664 -45102508 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 7 1187 21 0 0 0 chr9 78974121 78974142 -45102030 + AT_rich Low_complexity Low_complexity 1 21 0 7 1187 432 97 0 0 chr9 78974447 78974509 -45101663 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1187 483 318 0 0 chr9 78974519 78974645 -45101527 - RSINE1 SINE B4 -35 130 5 7 1187 1083 315 196 25 chr9 78974687 78975162 -45101010 - BLACKJACK DNA AcHobo -622 2322 1761 7 1187 382 68 0 0 chr9 78975162 78975221 -45100951 - L1_Mus3 LINE L1 -6 6632 6574 7 1187 1083 315 196 25 chr9 78975221 78976185 -45099987 - BLACKJACK DNA AcHobo -1184 1760 636 7 1187 350 255 771 0 chr9 78976650 78976759 -45099413 - B3 SINE B2 -19 197 5 7 1187 1218 231 88 3 chr9 78977015 78977366 -45098806 - Lx9 LINE L1 -7 7637 7257 7 1187 2195 214 6 15 chr9 78977369 78977844 -45098328 + Lx9 LINE L1 6767 7237 -407 7 1187 25 51 0 0 chr9 78978184 78978223 -45097949 + AT_rich Low_complexity Low_complexity 1 39 0 7 1187 9060 156 27 166 chr9 78978357 78983872 -45092300 - Lx3C LINE L1 -1 6975 2300 7 1187 405 268 28 0 chr9 78983897 78984039 -45092133 + L1M2 LINE L1 4898 5043 -1100 7 1187 2881 176 2 0 chr9 78984133 78984679 -45091493 - L1_Mm LINE L1 -592 5291 4745 7 1187 494 251 17 17 chr9 78984678 78984852 -45091320 + L1_Rod LINE L1 5053 5226 -621 7 1187 1304 280 49 93 chr9 78984925 78985034 -45091138 + Lx9 LINE L1 6655 6749 -895 7 1187 898 128 0 92 chr9 78985034 78985188 -45090984 + B1_Mus1 SINE Alu 1 141 -7 7 1187 501 17 0 0 chr9 78985188 78985246 -45090926 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 7 1187 1304 280 49 93 chr9 78985254 78985852 -45090320 + Lx9 LINE L1 6750 7331 -313 7 1187 23 0 0 0 chr9 78987720 78987743 -45088429 + AT_rich Low_complexity Low_complexity 1 23 0 7 1187 332 159 58 0 chr9 78987847 78987916 -45088256 - HAL1-3A_ME LINE L1 -811 2047 1975 7 1187 257 286 0 0 chr9 78987918 78987981 -45088191 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1187 554 322 39 35 chr9 78987984 78988267 -45087905 - B4A SINE B4 -8 284 1 7 1187 581 315 91 62 chr9 78990048 78990400 -45085772 - MLT1A LTR MaLR -11 363 2 7 1187 629 297 38 0 chr9 78990748 78990933 -45085239 + Lx8 LINE L1 7151 7342 -131 7 1187 2374 50 0 3 chr9 78991437 78991739 -45084433 + L1Md_F2 LINE L1 6282 6582 0 7 1187 4010 131 22 32 chr9 78992566 78993215 -45082957 + Lx4A LINE L1 6416 7057 -1 7 1187 652 280 65 16 chr9 78993264 78993449 -45082723 - B3A SINE B2 0 198 5 7 1187 183 80 0 0 chr9 78994465 78994490 -45081682 + (TTTCC)n Simple_repeat Simple_repeat 3 27 0 7 1187 684 0 0 0 chr9 78994739 78994815 -45081357 + (GAAA)n Simple_repeat Simple_repeat 4 79 0 7 1187 183 80 0 0 chr9 78996053 78996078 -45080094 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1187 30 0 0 0 chr9 78996270 78996300 -45079872 + AT_rich Low_complexity Low_complexity 1 30 0 7 1187 1108 329 36 72 chr9 78996355 78996525 -45079647 - Lx8 LINE L1 -409 7064 6919 7 1187 4091 51 6 2 chr9 78996525 78997040 -45079132 + L1Md_F2 LINE L1 6066 6582 0 7 1187 2187 275 30 27 chr9 78997040 78997746 -45078426 - Lx7 LINE L1 -774 6922 6215 7 1187 368 307 22 74 chr9 78997773 78998003 -45078169 - L1M2 LINE L1 -550 5630 5412 7 1187 1876 280 64 16 chr9 78998497 78999413 -45076759 - L1_Mur3 LINE L1 -1125 4755 3796 7 1187 318 194 0 0 chr9 78999414 78999481 -45076691 + GA-rich Low_complexity Low_complexity 1 67 0 7 1187 1394 45 0 6 chr9 78999481 78999660 -45076512 + (GAA)n Simple_repeat Simple_repeat 1 178 0 7 1187 993 158 0 0 chr9 78999664 78999841 -45076331 + GA-rich Low_complexity Low_complexity 3 179 0 7 1187 210 222 31 16 chr9 78999853 78999917 -45076255 + GA-rich Low_complexity Low_complexity 1 65 0 7 1187 1255 310 48 23 chr9 79000002 79000818 -45075354 - L1_Mur3 LINE L1 -2965 2915 2080 1 1187 22 0 0 54 chr9 79001312 79001330 -45074842 + AT_rich Low_complexity Low_complexity 1 18 0 2 1187 1306 93 16 0 chr9 79001330 79001513 -45074659 - B2_Mm2 SINE B2 -9 186 1 3 1187 22 0 0 54 chr9 79001513 79001531 -45074641 + AT_rich Low_complexity Low_complexity 1 17 0 4 1187 607 283 78 6 chr9 79001662 79001829 -45074343 - B3A SINE B2 -16 182 4 5 1187 583 300 131 87 chr9 79001831 79002266 -45073906 + MER82 DNA MER2_type 163 616 -37 6 1187 266 189 0 35 chr9 79003569 79003684 -45072488 + CT-rich Low_complexity Low_complexity 1 111 0 7 1187 438 20 0 0 chr9 79003686 79003737 -45072435 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1187 341 189 10 91 chr9 79003738 79003837 -45072335 + L1MC1 LINE L1 6243 6333 0 9 1187 781 312 101 36 chr9 79004019 79004601 -45071571 - L1MC1 LINE L1 -100 6233 5614 1 1187 3521 306 59 59 chr9 79004737 79005979 -45070193 + Lx8 LINE L1 5636 6872 -601 1 1187 3200 51 13 0 chr9 79005979 79006374 -45069798 - MTB LTR MaLR 0 400 1 1 1187 3521 306 59 59 chr9 79006374 79006460 -45069712 + Lx8 LINE L1 6873 6955 -518 1 1187 2242 172 21 44 chr9 79006460 79006891 -45069281 + MTC LTR MaLR 1 421 0 1 1187 3521 284 58 51 chr9 79006891 79007322 -45068850 + Lx8 LINE L1 6956 7464 -9 1 1187 28 48 0 0 chr9 79008872 79008914 -45067258 + AT_rich Low_complexity Low_complexity 1 42 0 1 1187 532 264 0 36 chr9 79008980 79009090 -45067082 + RSINE1 SINE B4 25 130 -35 1 1187 252 0 0 0 chr9 79009104 79009132 -45067040 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1187 2737 73 0 11 chr9 79010492 79010867 -45065305 - L1Md_F2 LINE L1 -1 6581 6211 1 1187 2967 37 0 0 chr9 79012156 79012505 -45063667 - L1_Mm LINE L1 -146 5737 5389 1 1187 3787 33 0 0 chr9 79012505 79012956 -45063216 + L1Md_F3 LINE L1 6134 6584 0 1 1187 290 273 78 65 chr9 79013588 79013643 -45062529 - MTEa LTR MaLR -223 156 2 2 1187 310 265 51 0 chr9 79013643 79013741 -45062431 - MLT2B3 LTR ERVL -450 104 2 2 1187 393 75 0 0 chr9 79014336 79014389 -45061783 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 2 1187 504 45 0 0 chr9 79014644 79014711 -45061461 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1187 373 259 23 15 chr9 79014711 79014844 -45061328 - HAL1-2a_MD LINE L1 -566 2458 2325 2 1187 371 368 21 57 chr9 79014845 79015038 -45061134 - B4 SINE B4 -105 187 2 2 1187 954 307 45 65 chr9 79015388 79015740 -45060432 - MTEa LTR MaLR 0 379 35 2 1187 22 56 0 0 chr9 79015888 79015924 -45060248 + AT_rich Low_complexity Low_complexity 1 36 0 2 1187 696 56 0 0 chr9 79016505 79016594 -45059578 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1187 821 215 95 24 chr9 79017068 79017278 -45058894 + URR1B DNA MER1_type 1 225 0 2 1187 225 0 0 0 chr9 79017407 79017432 -45058740 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1187 926 143 189 5 chr9 79018475 79018665 -45057507 + URR1B DNA MER1_type 1 225 0 3 1187 2056 42 0 4 chr9 79019074 79019336 -45056836 + RLTR10A LTR ERVK 1 261 -150 3 1187 966 88 7 0 chr9 79019317 79019454 -45056718 + RLTR27 LTR ERVK 172 309 0 3 1187 1136 92 0 0 chr9 79019561 79019713 -45056459 - L1_Mm LINE L1 -350 5533 5382 3 1187 2576 60 6 0 chr9 79019713 79020048 -45056124 + L1_Mus2 LINE L1 6229 6565 -1 3 1187 581 264 35 20 chr9 79020048 79020093 -45056079 - L1M3 LINE L1 -773 5410 5362 3 1187 210 167 0 48 chr9 79020682 79020745 -45055427 + A-rich Low_complexity Low_complexity 5 64 0 3 1187 45 34 0 0 chr9 79021630 79021689 -45054483 + AT_rich Low_complexity Low_complexity 1 59 0 3 1187 241 295 0 16 chr9 79022785 79022847 -45053325 - ORR1E LTR MaLR -240 119 59 3 1187 699 238 188 9 chr9 79022900 79023291 -45052881 + L1MA8 LINE L1 5255 5723 -568 4 1187 2120 209 2 24 chr9 79023320 79023742 -45052430 - MTC LTR MaLR -8 413 1 4 1187 718 256 86 19 chr9 79023752 79024019 -45052153 + L1MA8 LINE L1 5766 6050 -241 4 1187 288 0 0 0 chr9 79024034 79024066 -45052106 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1187 680 309 12 8 chr9 79024493 79024751 -45051421 - L1M4b LINE L1 -1926 5074 4816 4 1187 444 214 29 39 chr9 79024759 79024861 -45051311 - PB1D10 SINE Alu -8 109 9 4 1187 397 285 81 30 chr9 79025223 79025465 -45050707 + MTEb LTR MaLR 93 372 -7 4 1187 419 307 142 17 chr9 79026132 79026312 -45049860 - L1M4b LINE L1 -4448 2886 2677 4 1187 2213 159 22 0 chr9 79026312 79026682 -45049490 - ORR1C1 LTR MaLR 0 378 1 4 1187 419 307 142 17 chr9 79026682 79026733 -45049439 - L1M4b LINE L1 -4658 2676 2627 4 1187 399 376 21 26 chr9 79026798 79026989 -45049183 - ORR1E LTR MaLR -127 232 43 4 1187 287 25 25 0 chr9 79027591 79027631 -45048541 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4 1187 24 0 0 0 chr9 79028084 79028108 -45048064 + AT_rich Low_complexity Low_complexity 1 24 0 4 1187 193 262 67 67 chr9 79028391 79028481 -45047691 + L4 LINE RTE 1298 1387 -642 5 1187 3605 223 149 30 chr9 79028577 79029520 -45046652 - RMER1B Other Other -10 1056 1 5 1187 204 40 0 0 chr9 79029544 79029569 -45046603 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1187 310 114 56 14 chr9 79029572 79029643 -45046529 + Lx2 LINE L1 6872 6945 -52 5 1187 6768 142 15 2 chr9 79029713 79031596 -45044576 - Lx LINE L1 -2 6652 4748 5 1187 23 0 0 0 chr9 79031673 79031696 -45044476 + AT_rich Low_complexity Low_complexity 1 23 0 5 1187 508 301 18 20 chr9 79032415 79032569 -45043603 + ID_B1 SINE B4 82 236 -56 5 1187 7506 64 0 0 chr9 79033591 79034545 -45041627 + L1Md_F2 LINE L1 4633 5586 -297 5 1187 8298 30 13 1 chr9 79034545 79035527 -45040645 + L1Md_F2 LINE L1 5587 6580 -2 5 148 20186 151 28 26 chr9 79035910 79038968 -45037204 + L1VL2 LINE L1 397 3442 -2441 5 1188 261 0 0 0 chr9 79038968 79038997 -45037175 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1188 20186 164 13 34 chr9 79038997 79039053 -45037119 + L1VL2 LINE L1 3443 3481 -2402 5 1188 531 0 0 0 chr9 79039053 79039112 -45037060 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 6 1188 20186 164 13 34 chr9 79039112 79040743 -45035429 + L1VL2 LINE L1 3482 5088 -795 5 1188 1397 123 31 22 chr9 79040746 79040971 -45035201 + L1VL2 LINE L1 5519 5745 -138 5 1188 712 81 8 47 chr9 79040971 79041100 -45035072 + Lx LINE L1 6531 6654 0 6 1188 7218 93 28 2 chr9 79043164 79044170 -45032002 - L1_Mus4 LINE L1 0 6636 5605 6 1188 1920 120 0 0 chr9 79044161 79044436 -45031736 + L1_Mus4 LINE L1 5325 5599 -284 6 1188 776 319 47 42 chr9 79044448 79044799 -45031373 + MTE2a LTR MaLR 1 361 -60 6 1188 21 36 0 0 chr9 79045320 79045348 -45030824 + AT_rich Low_complexity Low_complexity 1 28 0 6 1188 23 0 0 0 chr9 79046905 79046928 -45029244 + AT_rich Low_complexity Low_complexity 1 23 0 6 1188 297 294 47 47 chr9 79047322 79047429 -45028743 + B4A SINE B4 184 290 -2 6 1188 204 67 0 0 chr9 79047794 79047824 -45028348 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1188 1846 169 85 0 chr9 79050757 79051111 -45025061 + ORR1C2 LTR MaLR 1 384 0 6 1188 708 221 68 5 chr9 79051504 79051709 -45024463 + L1MA9 LINE L1 5895 6112 -200 6 1188 549 0 0 0 chr9 79051743 79051804 -45024368 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1188 484 248 124 0 chr9 79051841 79051978 -45024194 - B3A SINE B2 -42 156 3 7 1188 1840 155 32 6 chr9 79052661 79052973 -45023199 - ORR1C1 LTR MaLR 0 378 59 7 1188 572 217 0 7 chr9 79052973 79053112 -45023060 + GA-rich Low_complexity Low_complexity 1 138 0 7 1188 477 316 28 35 chr9 79053135 79053276 -45022896 - B3A SINE B2 -14 184 45 7 1188 23 0 0 0 chr9 79053281 79053304 -45022868 + AT_rich Low_complexity Low_complexity 1 23 0 7 1188 641 234 103 31 chr9 79053305 79053499 -45022673 - B3 SINE B2 -4 212 5 7 1188 23 33 0 0 chr9 79053694 79053724 -45022448 + AT_rich Low_complexity Low_complexity 1 30 0 7 1188 298 289 88 40 chr9 79054017 79054266 -45021906 - L1M2 LINE L1 -3755 2388 2128 7 1188 318 280 63 78 chr9 79054289 79054494 -45021678 - L1MCa LINE L1 -4683 1825 1624 7 1188 7000 61 2 9 chr9 79055441 79056350 -45019822 + L1Md_F2 LINE L1 5680 6582 0 8 1188 549 302 73 7 chr9 79056884 79057034 -45019138 + RSINE1 SINE B4 3 162 -3 8 1188 576 42 0 0 chr9 79057363 79057434 -45018738 + (TCCA)n Simple_repeat Simple_repeat 2 72 0 8 1188 191 335 153 27 chr9 79057966 79058227 -45017945 + L2 LINE L2 1712 2005 -1414 8 1188 597 73 54 9 chr9 79058268 79058379 -45017793 - L1_Mus4 LINE L1 -12 6624 6509 8 1188 21 0 0 0 chr9 79058433 79058454 -45017718 + AT_rich Low_complexity Low_complexity 1 21 0 8 1188 574 13 27 0 chr9 79059132 79059207 -45016965 + (TG)n Simple_repeat Simple_repeat 2 78 0 8 1188 954 308 19 11 chr9 79059236 79059502 -45016670 - B4A SINE B4 -7 285 18 8 1188 682 318 73 22 chr9 79059847 79060120 -45016052 - B4A SINE B4 0 292 6 8 1188 409 221 152 79 chr9 79060328 79060505 -45015667 - B3A SINE B2 -8 190 1 8 1188 1857 166 163 0 chr9 79060540 79060902 -45015270 + MTC LTR MaLR 1 421 0 9 1188 27 73 0 0 chr9 79061614 79061669 -45014503 + AT_rich Low_complexity Low_complexity 1 55 0 9 1188 32 67 0 0 chr9 79063201 79063261 -45012911 + AT_rich Low_complexity Low_complexity 1 60 0 9 1188 202 143 24 0 chr9 79064890 79064932 -45011240 + (TA)n Simple_repeat Simple_repeat 2 44 0 9 1188 470 188 0 20 chr9 79065302 79065400 -45010772 - MTC LTR MaLR 0 421 326 9 1188 455 251 3 3 chr9 79065401 79065530 -45010642 + MTC LTR MaLR 1 129 -290 9 1188 468 202 113 19 chr9 79065502 79065608 -45010564 + MTC LTR MaLR 297 412 -9 9 1188 1721 190 26 3 chr9 79065620 79065932 -45010240 - MTC LTR MaLR -102 319 1 9 1188 423 0 0 0 chr9 79066199 79066246 -45009926 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1188 5675 5 0 0 chr9 79066470 79067098 -45009074 + L1Md_A LINE L1 5955 6582 0 9 1188 271 329 84 63 chr9 79067871 79068194 -45007978 - L2a LINE L2 -278 3148 2814 9 1188 562 37 25 0 chr9 79069495 79069576 -45006596 + (TG)n Simple_repeat Simple_repeat 2 84 0 9 1188 478 326 5 40 chr9 79069752 79069950 -45006222 + B3A SINE B2 1 191 -7 1 1188 293 170 28 74 chr9 79070023 79070131 -45006041 - Lx7 LINE L1 0 7696 7594 1 1188 285 51 0 0 chr9 79070150 79070199 -45005973 - Lx2 LINE L1 -1 6996 6953 1 1188 2020 93 7 0 chr9 79070199 79070477 -45005695 - ORR1A2 LTR MaLR 0 327 48 1 1188 242 292 129 15 chr9 79070481 79070613 -45005559 - RLTR25B LTR ERVK -33 995 849 1 1188 546 29 0 0 chr9 79070872 79070940 -45005232 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 1188 931 199 28 19 chr9 79072003 79072218 -45003954 - Lx6 LINE L1 -1453 6007 5791 1 1188 1697 212 11 0 chr9 79072210 79072564 -45003608 + Lx6 LINE L1 5425 5782 -98 1 1188 228 67 0 0 chr9 79072919 79072949 -45003223 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1188 342 292 114 9 chr9 79072956 79073070 -45003102 - RSINE1 SINE B4 -38 127 2 1 1188 810 294 52 18 chr9 79073761 79074218 -45001954 + L1_Mur3 LINE L1 3282 3754 -2126 1 1188 2450 180 13 117 chr9 79074233 79074691 -45001481 - Lx3B LINE L1 -822 6151 5751 1 1188 3829 29 0 0 chr9 79074691 79075134 -45001038 - L1Md_T LINE L1 -3 6579 6137 1 1188 2450 149 0 142 chr9 79075134 79075432 -45000740 - Lx3B LINE L1 -1223 5750 5456 1 1188 3150 210 53 12 chr9 79075429 79076182 -44999990 + Lx2B LINE L1 6212 6995 -5 1 1188 648 261 178 9 chr9 79076181 79076513 -44999659 + L1_Mur3 LINE L1 3757 4144 -1736 1 1188 334 19 6 153 chr9 79076523 79076706 -44999466 + (CAATA)n Simple_repeat Simple_repeat 2 157 0 1 1188 467 272 96 20 chr9 79076706 79076991 -44999181 + L1_Mur3 LINE L1 4136 4454 -1689 1 1188 2025 205 29 2 chr9 79077069 79077489 -44998683 - Lx6 LINE L1 -635 6825 6395 1 1188 25 31 0 0 chr9 79077548 79077580 -44998592 + AT_rich Low_complexity Low_complexity 1 32 0 1 1188 414 0 0 0 chr9 79078197 79078243 -44997929 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1188 513 236 75 134 chr9 79078885 79079086 -44997086 + B3A SINE B2 1 191 -7 1 1188 535 140 16 0 chr9 79079696 79079800 -44996372 - L1_Mm LINE L1 -1528 4618 4487 1 1188 2397 107 25 6 chr9 79079800 79080156 -44996016 + Lx LINE L1 6289 6651 -3 1 1188 228 272 34 80 chr9 79080959 79081047 -44995125 - Zaphod DNA Tip100 -3442 589 506 1 1188 258 346 46 86 chr9 79081884 79082058 -44994114 + MER58B DNA MER1_type 4 170 -171 1 1188 504 187 26 53 chr9 79082282 79082395 -44993777 + B1_Mur4 SINE Alu 41 150 0 1 1188 1850 255 56 24 chr9 79082518 79083056 -44993116 - Lx7 LINE L1 -174 7522 6968 1 1188 343 156 56 0 chr9 79083063 79083153 -44993019 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 1 1188 4213 238 128 4 chr9 79083159 79083318 -44992854 - Lx6 LINE L1 -15 7445 7285 1 1188 537 16 0 0 chr9 79083318 79083380 -44992792 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1188 4213 238 128 4 chr9 79083380 79084370 -44991802 - Lx6 LINE L1 -176 7284 6156 1 1188 21 71 0 0 chr9 79084914 79084956 -44991216 + AT_rich Low_complexity Low_complexity 1 42 0 1 1188 229 348 43 55 chr9 79085355 79085519 -44990653 + MIRb SINE MIR 85 246 -22 1 1188 1620 326 53 12 chr9 79087886 79088643 -44987529 - Lx9 LINE L1 -529 7115 6328 1 1188 2184 169 26 0 chr9 79088767 79089151 -44987021 - ORR1B1 LTR MaLR 0 394 1 1 1188 510 244 0 0 chr9 79089152 79089271 -44986901 + Lx9 LINE L1 7075 7193 -451 1 1188 299 262 39 0 chr9 79089346 79089449 -44986723 + Lx9 LINE L1 7366 7472 -172 1 1188 24 0 0 0 chr9 79089535 79089559 -44986613 + AT_rich Low_complexity Low_complexity 1 24 0 1 1188 746 323 5 21 chr9 79089640 79089833 -44986339 - B3 SINE B2 -17 199 10 1 1188 207 100 0 0 chr9 79090089 79090119 -44986053 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1188 375 89 0 0 chr9 79090312 79090368 -44985804 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1188 21 0 0 0 chr9 79091513 79091534 -44984638 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 827 275 96 96 chr9 79092013 79092700 -44983472 - L1_Rod LINE L1 -1503 4377 3691 1 1188 937 289 60 18 chr9 79092768 79093099 -44983073 - Tigger7 DNA MER2_type -1970 521 177 1 1188 4276 135 53 13 chr9 79093240 79094066 -44982106 - L1_Mm LINE L1 -1789 4094 3236 1 1188 7411 129 18 17 chr9 79094062 79095230 -44980942 + L1_Mus3 LINE L1 4621 5790 -93 1 1188 207 0 0 0 chr9 79095230 79095253 -44980919 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1188 7411 97 15 11 chr9 79095253 79096102 -44980070 + L1_Mus3 LINE L1 5791 6638 0 1 1188 731 348 40 25 chr9 79097046 79097373 -44978799 + MTEb LTR MaLR 1 332 -47 1 1188 1022 286 143 20 chr9 79097377 79097980 -44978192 + Lx9 LINE L1 6948 7624 -20 1 1188 468 312 24 78 chr9 79098428 79098653 -44977519 - ORR1E LTR MaLR -157 213 2 1 1188 515 314 63 75 chr9 79099196 79099527 -44976645 + MLT1K LTR MaLR 253 579 -16 1 1188 279 0 0 0 chr9 79100711 79100742 -44975430 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 1188 250 254 0 0 chr9 79100793 79100852 -44975320 + Lx8 LINE L1 6436 6494 -979 1 1188 180 0 0 0 chr9 79101314 79101334 -44974838 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1188 756 287 118 11 chr9 79102006 79102277 -44973895 + MTE2a LTR MaLR 20 319 -60 1 1188 33806 35 1 0 chr9 79102278 79108393 -44967779 + L1Md_T LINE L1 1 5589 -297 1 1188 8985 6 0 3 chr9 79108393 79109392 -44966780 + L1Md_T LINE L1 5590 6585 0 1 1188 343 203 14 0 chr9 79109398 79109472 -44966700 + MTE2a LTR MaLR 305 379 0 1 1188 416 239 44 33 chr9 79109742 79109833 -44966339 + ORR1E LTR MaLR 1 92 -267 1 1188 252 353 26 0 chr9 79109845 79109961 -44966211 + PB1 SINE Alu 1 119 -8 1 1188 22 35 0 0 chr9 79110003 79110032 -44966140 + AT_rich Low_complexity Low_complexity 1 29 0 1 1188 3855 70 0 14 chr9 79110061 79110566 -44965606 - L1Md_T LINE L1 -1 6581 6084 1 1188 1166 46 0 0 chr9 79110566 79110717 -44965455 + L1Md_T LINE L1 5933 6083 -499 1 1188 279 306 165 9 chr9 79110920 79111029 -44965143 - MLT1G1 LTR MaLR -310 269 144 1 1188 294 360 45 23 chr9 79111148 79111324 -44964848 + L2 LINE L2 1542 1721 -1698 1 1188 228 182 0 0 chr9 79111337 79111381 -44964791 + (CATA)n Simple_repeat Simple_repeat 1 44 0 1 1188 416 205 59 17 chr9 79111411 79111530 -44964642 + Lx9 LINE L1 7376 7499 -145 1 1188 235 333 64 0 chr9 79112397 79112475 -44963697 - ID4 SINE ID 0 83 1 1 1188 608 326 188 54 chr9 79112688 79113577 -44962595 + L2 LINE L2 1796 2838 -581 1 1188 183 80 0 0 chr9 79113577 79113602 -44962570 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 1 1188 608 326 188 54 chr9 79113602 79113832 -44962340 + L2 LINE L2 2839 3064 -355 1 1188 1470 259 17 28 chr9 79115054 79115416 -44960756 - MTE2b LTR MaLR -3 376 19 1 1188 489 296 24 0 chr9 79115624 79115749 -44960423 + B4A SINE B4 71 198 -94 1 1188 241 196 22 0 chr9 79115809 79115855 -44960317 - RMER21B LTR ERV1 -274 568 522 1 1188 513 0 0 0 chr9 79115874 79115931 -44960241 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1188 414 0 0 0 chr9 79115931 79115976 -44960196 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1188 922 255 31 0 chr9 79118849 79119041 -44957131 - B3 SINE B2 -7 209 12 1 1188 207 0 0 0 chr9 79119935 79119958 -44956214 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1 1188 4956 174 40 8 chr9 79119962 79121055 -44955117 - Lx4B LINE L1 -36 6964 5800 1 1188 683 269 26 21 chr9 79121610 79121801 -44954371 + B3A SINE B2 1 182 -34 1 1188 22 35 0 0 chr9 79122031 79122060 -44954112 + AT_rich Low_complexity Low_complexity 1 29 0 1 1188 39 22 0 0 chr9 79122804 79122850 -44953322 + AT_rich Low_complexity Low_complexity 1 46 0 1 1188 368 288 91 25 chr9 79123104 79123225 -44952947 + MTEa LTR MaLR 172 300 -79 1 1188 205 197 29 57 chr9 79123296 79123366 -44952806 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 1 1188 328 20 78 0 chr9 79124305 79124356 -44951816 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 1 1188 4920 66 0 3 chr9 79124665 79125291 -44950881 + L1Md_F2 LINE L1 5948 6571 -11 1 1188 2187 182 47 2 chr9 79125888 79126311 -44949861 + Lx2B LINE L1 6559 7000 0 1 1188 1226 82 14 169 chr9 79126636 79126915 -44949257 + L1_Mus1 LINE L1 4875 5110 -773 1 1188 4631 57 7 0 chr9 79126915 79127497 -44948675 + L1Md_F2 LINE L1 5985 6570 -12 1 1188 6986 79 8 6 chr9 79127720 79129187 -44946985 + L1_Mus1 LINE L1 5099 6566 -1 1 1188 368 331 8 31 chr9 79129281 79129409 -44946763 - B3A SINE B2 -72 126 2 1 1188 217 341 29 58 chr9 79129761 79129898 -44946274 - B2_Mm2 SINE B2 -9 186 54 1 1188 435 379 0 48 chr9 79129780 79129927 -44946245 - RSINE1 SINE B4 0 165 26 1 1188 265 240 0 51 chr9 79130129 79130208 -44945964 + RLTR25B LTR ERVK 428 502 -526 1 1188 702 142 0 0 chr9 79130146 79130252 -44945920 + B1_Mus2 SINE Alu 42 147 0 1 1188 21 57 0 0 chr9 79130503 79130538 -44945634 + AT_rich Low_complexity Low_complexity 1 35 0 1 1188 417 260 141 23 chr9 79131821 79131998 -44944174 + B3A SINE B2 1 198 0 1 1188 1028 42 90 0 chr9 79132368 79132512 -44943660 - L1Md_F2 LINE L1 -12 6570 6414 1 1188 291 306 0 85 chr9 79132997 79133115 -44943057 - PB1D9 SINE Alu -2 118 11 1 1188 238 338 32 58 chr9 79133292 79133446 -44942726 + MTE2a LTR MaLR 21 170 -189 1 1188 248 333 13 0 chr9 79133929 79134004 -44942168 + MTE2a LTR MaLR 290 365 -14 1 1188 369 345 86 6 chr9 79134180 79134355 -44941817 + MLT1J LTR MaLR 22 210 -302 1 1188 557 281 15 40 chr9 79134763 79134933 -44941239 + RMER20B LTR ERVK 1 161 -355 1 1188 25330 113 12 106 chr9 79136146 79142590 -44933582 + L1_Mus2 LINE L1 395 6638 0 1 1188 629 327 41 85 chr9 79143760 79144124 -44932048 - ORR1E LTR MaLR -6 353 6 1 1188 726 215 23 2 chr9 79144279 79144456 -44931716 - Lx4B LINE L1 -650 6326 6145 1 1188 6706 141 32 3 chr9 79144433 79145849 -44930323 + Lx4B LINE L1 4685 6149 -909 1 1188 4603 52 0 3 chr9 79145909 79146484 -44929688 + L1Md_F2 LINE L1 6010 6582 0 1 1188 449 295 18 9 chr9 79148028 79148141 -44928031 + B3A SINE B2 2 115 -83 1 1188 1811 249 80 51 chr9 79148143 79148828 -44927344 - Lx7 LINE L1 -1208 6488 5784 1 1188 2091 252 95 30 chr9 79148839 79148997 -44927175 - Lx6 LINE L1 -182 7278 7127 1 1188 3529 181 125 66 chr9 79148997 79149847 -44926325 + RMER19B LTR ERVK 1 900 -2 1 1188 2091 252 95 30 chr9 79149847 79150289 -44925883 - Lx6 LINE L1 -334 7126 6639 1 1188 838 218 12 0 chr9 79150282 79150452 -44925720 - Lx7 LINE L1 -1275 6421 6250 1 1188 314 185 11 69 chr9 79150461 79150548 -44925624 - Lx6 LINE L1 -816 6644 6563 1 1188 727 264 36 36 chr9 79150583 79150807 -44925365 + RMER15 LTR ERVL 336 559 -16 2 1188 237 287 138 0 chr9 79151138 79151225 -44924947 - MTD LTR MaLR -15 404 306 2 1188 1934 177 44 3 chr9 79151671 79151958 -44924214 + ORR1B2 LTR MaLR 14 315 -52 2 1188 3405 76 7 4 chr9 79151958 79152408 -44923764 + L1Md_F2 LINE L1 6131 6581 -1 2 1188 1934 177 44 3 chr9 79152408 79152460 -44923712 + ORR1B2 LTR MaLR 316 367 0 2 1188 981 264 10 8 chr9 79153051 79153323 -44922849 - Lx9 LINE L1 -355 7289 6884 2 1188 433 223 9 18 chr9 79153372 79153486 -44922686 + Lx9 LINE L1 7316 7428 -216 2 1188 21 95 0 0 chr9 79153957 79154020 -44922152 + AT_rich Low_complexity Low_complexity 1 63 0 2 1188 356 172 22 54 chr9 79154259 79154351 -44921821 + Lx9 LINE L1 7314 7402 -242 2 1188 984 46 0 0 chr9 79154414 79154544 -44921628 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 1188 3394 281 44 35 chr9 79155905 79157124 -44919048 - Lx8 LINE L1 0 7473 6244 2 1188 32 75 0 0 chr9 79157153 79157220 -44918952 + AT_rich Low_complexity Low_complexity 1 67 0 2 1188 312 299 87 43 chr9 79157292 79157477 -44918695 - L1MC5 LINE L1 -55 7906 7714 2 1188 1770 308 40 9 chr9 79160514 79160958 -44915214 + Lx9 LINE L1 6528 6992 -652 2 1188 378 0 0 0 chr9 79160958 79161000 -44915172 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 2 1188 1770 308 40 9 chr9 79161000 79161234 -44914938 + Lx9 LINE L1 6993 7227 -417 2 1188 7972 28 6 0 chr9 79161237 79162413 -44913759 - L1Md_F3 LINE L1 -16 6568 5389 2 1188 1108 348 59 25 chr9 79162416 79162938 -44913234 - MER74A LTR ERVL 0 558 19 2 1188 750 205 7 20 chr9 79164137 79164286 -44911886 - B1_Mur1 SINE Alu -1 148 2 2 1188 689 0 0 12 chr9 79164577 79164659 -44911513 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1188 230 265 56 67 chr9 79164659 79164748 -44911424 - RMER17D LTR ERVK -567 322 235 2 1188 289 286 14 0 chr9 79164793 79164863 -44911309 + L2b LINE L2 3286 3356 -19 2 1188 259 273 13 0 chr9 79165615 79165692 -44910480 - L1ME1 LINE L1 -13 6166 6089 2 1188 242 200 0 18 chr9 79166178 79166234 -44909938 - L1M5 LINE L1 -605 5574 5520 2 1188 1823 154 63 85 chr9 79166296 79166694 -44909478 + ORR1B1 LTR MaLR 2 390 -4 2 1188 570 290 22 38 chr9 79166748 79166931 -44909241 + B3A SINE B2 1 180 -18 2 1188 25 51 0 0 chr9 79167032 79167071 -44909101 + AT_rich Low_complexity Low_complexity 1 39 0 2 1189 186 103 0 0 chr9 79168264 79168293 -44907879 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1189 1127 96 0 0 chr9 79168295 79168441 -44907731 - B1_Mus1 SINE Alu -1 147 2 2 1189 611 203 0 39 chr9 79168469 79168623 -44907549 - L1Md_F2 LINE L1 0 6582 6435 2 1189 189 0 0 0 chr9 79169592 79169613 -44906559 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1189 8111 26 0 1 chr9 79170372 79171928 -44904244 - L1Md_T LINE L1 0 6582 5029 2 1189 1182 200 65 0 chr9 79172003 79172218 -44903954 - MT2B LTR ERVL -338 263 35 2 1189 418 143 29 0 chr9 79172160 79172230 -44903942 - ORR1A3-int LTR MaLR -1258 705 634 2 1189 2411 215 13 62 chr9 79172246 79172796 -44903376 - RLTR25A LTR ERVK -580 523 1 2 1189 279 0 0 0 chr9 79172796 79172827 -44903345 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1189 15740 61 5 1 chr9 79173068 79175192 -44900980 + L1Md_F2 LINE L1 3472 5605 -278 2 1189 6932 77 4 5 chr9 79175192 79176117 -44900055 + L1Md_F2 LINE L1 5656 6579 -3 2 1189 497 283 183 37 chr9 79176249 79176818 -44899354 + L1MC3 LINE L1 6407 7058 -727 2 1189 623 271 0 0 chr9 79177752 79177896 -44898276 + B1_Mus2 SINE Alu 1 144 -3 2 1189 415 294 98 20 chr9 79178203 79178508 -44897664 - L1ME1 LINE L1 -134 6045 5717 2 1189 500 244 21 3 chr9 79178514 79178654 -44897518 + MTD LTR MaLR 216 418 -1 2 1189 583 308 6 6 chr9 79178814 79178997 -44897175 + Lx8 LINE L1 6241 6423 -1050 2 1189 1337 303 82 27 chr9 79178989 79180006 -44896166 - Lx8 LINE L1 -878 6595 5483 2 1189 1353 268 52 45 chr9 79180021 79180693 -44895479 - Lx8 LINE L1 -1291 4589 3913 2 1189 533 362 0 9 chr9 79180760 79180991 -44895181 + Lx8 LINE L1 7053 7281 -192 2 1189 2286 91 71 8 chr9 79180992 79181410 -44894762 - RLTR44D LTR ERVK 0 452 1 2 1189 21 71 0 0 chr9 79181555 79181597 -44894575 + AT_rich Low_complexity Low_complexity 1 42 0 2 1189 18437 74 5 2 chr9 79181938 79185187 -44890985 - L1Md_F2 LINE L1 -19 6563 3305 2 1189 510 61 0 0 chr9 79186055 79186121 -44890051 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 2 1189 7316 117 65 8 chr9 79186174 79187739 -44888433 - Lx3B LINE L1 -6 6967 5316 2 1189 443 228 43 14 chr9 79187751 79187889 -44888283 + Lx8 LINE L1 6789 6930 -543 2 1189 448 259 51 8 chr9 79188037 79188154 -44888018 - RSINE1 SINE B4 -38 127 6 2 1189 229 304 18 0 chr9 79188815 79188871 -44887301 + ID4_ SINE ID 17 73 -10 2 1189 444 337 46 36 chr9 79188821 79189015 -44887157 + ID_B1 SINE B4 25 220 -4 2 1189 320 285 5 3 chr9 79189039 79189141 -44887031 + B1_Mur2 SINE Alu 47 149 0 2 1189 485 238 164 50 chr9 79189255 79189414 -44886758 - B3 SINE B2 -13 203 27 2 1189 266 156 219 0 chr9 79189701 79189765 -44886407 - ID4_ SINE ID -2 81 4 2 1189 657 0 0 0 chr9 79190741 79190814 -44885358 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 1189 5750 28 0 1 chr9 79190846 79191516 -44884656 - L1Md_F2 LINE L1 -14 6568 5900 2 1189 857 291 98 42 chr9 79191582 79192012 -44884160 + Lx8 LINE L1 7018 7471 -2 2 1189 835 166 22 0 chr9 79192739 79192878 -44883294 + B1_Mur4 SINE Alu 2 143 -7 2 1189 753 254 98 10 chr9 79193149 79193352 -44882820 - ID_B1 SINE B4 -3 221 1 2 1189 192 77 0 0 chr9 79195784 79195810 -44880362 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2 1189 24 0 0 0 chr9 79196451 79196475 -44879697 + AT_rich Low_complexity Low_complexity 1 24 0 2 1189 1180 75 0 0 chr9 79197076 79197235 -44878937 - L1_Mur1 LINE L1 -3078 2808 2650 2 1189 8704 102 27 12 chr9 79197233 79198598 -44877574 + Lx3A LINE L1 5594 6979 -2 2 1189 1384 81 16 5 chr9 79200399 79200586 -44875586 - B2_Mm2 SINE B2 -5 190 2 2 1189 536 41 0 0 chr9 79200647 79200720 -44875452 + L1_Mus2 LINE L1 6493 6565 -1 2 1189 2120 298 44 33 chr9 79200994 79201968 -44874204 + Lx9 LINE L1 6357 7372 -272 2 1189 1386 159 259 18 chr9 79201970 79202301 -44873871 - MTC LTR MaLR -10 411 1 2 1189 387 0 0 0 chr9 79202343 79202386 -44873786 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1189 35 41 0 0 chr9 79202425 79202474 -44873698 + AT_rich Low_complexity Low_complexity 1 49 0 2 1189 772 300 25 81 chr9 79202757 79203040 -44873132 + B4A SINE B4 26 292 0 2 1189 198 287 191 0 chr9 79203138 79203232 -44872940 + MIRb SINE MIR 45 156 -112 2 1189 37 62 0 0 chr9 79203541 79203606 -44872566 + AT_rich Low_complexity Low_complexity 1 65 0 2 1189 185 281 110 0 chr9 79203928 79204010 -44872162 - MIR SINE MIR -67 141 51 2 1189 2237 310 33 25 chr9 79205056 79206046 -44870126 - Lx8 LINE L1 -234 7239 6242 2 1189 23 33 0 0 chr9 79206458 79206488 -44869684 + AT_rich Low_complexity Low_complexity 1 30 0 2 1189 312 143 0 0 chr9 79206724 79206780 -44869392 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 2 1189 557 321 62 31 chr9 79207108 79207397 -44868775 + Lx8 LINE L1 7169 7466 -7 2 1189 336 282 15 30 chr9 79207440 79207575 -44868597 - Lx7 LINE L1 -1 7695 7563 2 1189 3387 63 2 16 chr9 79207602 79208054 -44868118 + L1Md_F2 LINE L1 6124 6569 -13 2 1189 366 23 0 0 chr9 79208085 79208128 -44868044 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1189 207 0 0 0 chr9 79208128 79208150 -44868022 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1189 297 0 0 0 chr9 79208288 79208321 -44867851 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1189 3910 110 2 2 chr9 79208408 79208964 -44867208 - Lx LINE L1 -6 6648 6093 2 1189 1529 136 71 4 chr9 79208964 79209245 -44866927 + Lx2 LINE L1 6127 6426 -571 2 1189 28 0 0 0 chr9 79209616 79209644 -44866528 + AT_rich Low_complexity Low_complexity 1 28 0 2 1189 213 188 82 20 chr9 79210664 79210713 -44865459 - B1F SINE Alu -78 71 20 2 1189 885 190 0 0 chr9 79210905 79211084 -44865088 + GA-rich Low_complexity Low_complexity 1 179 0 2 1189 243 88 0 0 chr9 79211079 79211113 -44865059 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 2 1189 960 152 94 30 chr9 79211522 79211725 -44864447 - MTC LTR MaLR -10 411 196 2 1189 28 61 0 0 chr9 79211756 79211805 -44864367 + AT_rich Low_complexity Low_complexity 1 49 0 2 1189 419 238 0 62 chr9 79212033 79212145 -44864027 + PB1D10 SINE Alu 13 117 0 2 1189 401 308 29 9 chr9 79212632 79212737 -44863435 - RSINE1 SINE B4 -54 111 5 2 1189 21 0 0 0 chr9 79213381 79213402 -44862770 + AT_rich Low_complexity Low_complexity 1 21 0 2 1189 8674 101 20 13 chr9 79213403 79214820 -44861352 - Lx3A LINE L1 -2 6979 5547 2 1189 577 258 33 0 chr9 79216395 79216546 -44859626 - RSINE1 SINE B4 -8 157 2 2 1189 6287 74 7 6 chr9 79217044 79218062 -44858110 - MusHAL1 LINE L1 -1754 1599 581 2 1189 1460 190 132 60 chr9 79218062 79218481 -44857691 - RLTR31A_Mm LTR ERVK 0 561 103 2 1189 534 198 0 0 chr9 79218481 79218572 -44857600 - L1VL4 LINE L1 -6029 273 183 2 1189 310 180 0 0 chr9 79221028 79221089 -44855083 - Lx2A LINE L1 -6 7002 6942 2 1189 1898 222 81 39 chr9 79221222 79221626 -44854546 + Lx7 LINE L1 6921 7335 -361 2 1189 207 0 0 0 chr9 79221626 79221649 -44854523 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1189 1898 222 81 39 chr9 79221649 79221812 -44854360 + Lx7 LINE L1 7336 7512 -184 2 1189 320 0 25 0 chr9 79221815 79221855 -44854317 + (TTA)n Simple_repeat Simple_repeat 1 41 0 3 1189 3376 172 42 23 chr9 79221856 79222548 -44853624 - Lx3C LINE L1 -11 6965 6261 3 1189 188 315 105 80 chr9 79223099 79223299 -44852873 + MIRc SINE MIR 42 246 -22 3 1189 309 153 46 53 chr9 79223359 79223511 -44852661 + (TATAA)n Simple_repeat Simple_repeat 2 152 0 3 1189 401 298 19 0 chr9 79223556 79223660 -44852512 + LSU-rRNA_Hsa rRNA rRNA 4588 4693 -342 3 1189 882 297 81 5 chr9 79223667 79224076 -44852096 + ERVL-B4-int LTR ERVL 1026 1465 -4249 3 1189 1176 341 61 41 chr9 79224114 79224964 -44851208 + ERVL-B4-int LTR ERVL 3178 4044 -1623 3 1189 1764 312 68 16 chr9 79224984 79225758 -44850414 + ERVL-B4-int LTR ERVL 4157 4971 -743 3 1189 914 251 0 19 chr9 79226564 79226771 -44849401 + MTD LTR MaLR 34 236 -183 3 1189 721 336 17 77 chr9 79226940 79227240 -44848932 + B4A SINE B4 9 290 -2 3 1189 378 0 0 0 chr9 79227474 79227516 -44848656 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1189 861 211 167 23 chr9 79228443 79228700 -44847472 - ORR1D1 LTR MaLR 0 374 81 3 1189 1184 73 0 6 chr9 79229204 79229369 -44846803 + (GTTTG)n Simple_repeat Simple_repeat 5 168 0 3 1189 585 0 0 0 chr9 79229369 79229433 -44846739 + (AGATG)n Simple_repeat Simple_repeat 5 69 0 3 1189 279 0 0 0 chr9 79229433 79229463 -44846709 + (ATTAG)n Simple_repeat Simple_repeat 5 35 0 3 1189 221 135 19 0 chr9 79230072 79230124 -44846048 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1189 241 227 11 22 chr9 79230313 79230403 -44845769 + (TTA)n Simple_repeat Simple_repeat 3 91 0 3 1189 28 29 0 0 chr9 79230470 79230505 -44845667 + AT_rich Low_complexity Low_complexity 1 35 0 3 1189 12253 71 4 4 chr9 79230506 79232900 -44843272 - L1Md_F2 LINE L1 -3 6579 4187 3 1189 248 366 9 0 chr9 79233297 79233409 -44842763 - L1MD3 LINE L1 -1106 6889 6777 3 1189 474 65 0 0 chr9 79234367 79234429 -44841743 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1189 1432 192 86 60 chr9 79234880 79235035 -44841137 + Lx5 LINE L1 6657 6811 -239 3 1189 261 0 0 0 chr9 79235035 79235064 -44841108 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 3 1189 1432 192 86 60 chr9 79235064 79235291 -44840881 + Lx5 LINE L1 6812 7048 -2 3 1189 318 222 64 9 chr9 79235614 79235723 -44840449 - L1MC LINE L1 -3715 2431 2317 3 1189 182 282 96 82 chr9 79236359 79236494 -44839678 + L3b LINE CR1 58 194 -288 3 1189 278 329 13 0 chr9 79238098 79238174 -44837998 - ID2 SINE ID -4 79 3 3 1189 342 0 0 0 chr9 79239223 79239261 -44836911 + (GGA)n Simple_repeat Simple_repeat 3 40 0 3 1189 332 176 71 0 chr9 79240081 79240166 -44836006 + Lx9 LINE L1 7552 7642 -2 3 1189 315 71 0 0 chr9 79240196 79240238 -44835934 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1189 232 245 0 0 chr9 79240959 79241008 -44835164 + L1MD3 LINE L1 6806 6854 -1141 3 1189 426 20 0 0 chr9 79241581 79241632 -44834540 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1189 616 141 16 0 chr9 79244082 79244203 -44831969 + GA-rich Low_complexity Low_complexity 2 124 0 3 1189 369 304 82 35 chr9 79244236 79244462 -44831710 - MLT1B LTR MaLR -141 224 1 3 1189 396 0 0 0 chr9 79244600 79244644 -44831528 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 1189 262 219 69 58 chr9 79245088 79245175 -44830997 + RLTR25B LTR ERVK 422 509 -519 3 1189 668 66 0 11 chr9 79245126 79245218 -44830954 + B1_Mus2 SINE Alu 56 146 -1 3 1189 203 104 83 0 chr9 79245219 79245267 -44830905 + A-rich Low_complexity Low_complexity 3 54 0 3 1189 295 141 15 15 chr9 79247967 79248032 -44828140 + GA-rich Low_complexity Low_complexity 4 68 0 3 1189 21 36 0 0 chr9 79248066 79248094 -44828078 + AT_rich Low_complexity Low_complexity 1 28 0 3 1189 429 345 54 24 chr9 79248673 79248884 -44827288 + Lx8 LINE L1 7030 7257 -216 3 1189 482 255 27 62 chr9 79249186 79249332 -44826840 - B1_Mur2 SINE Alu -2 147 7 3 1189 289 292 88 36 chr9 79249351 79249670 -44826502 - MLT1B LTR MaLR -49 418 2 3 1189 329 77 39 0 chr9 79250228 79250280 -44825892 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 3 1189 1978 92 0 7 chr9 79250387 79250671 -44825501 + L1_Mus2 LINE L1 6284 6565 -1 3 1189 36653 10 2 8 chr9 79250694 79256291 -44819881 + L1Md_A LINE L1 25 5586 -297 3 1189 8946 7 1 0 chr9 79256291 79257286 -44818886 + L1Md_A LINE L1 5587 6582 0 3 1189 225 174 43 0 chr9 79257554 79257623 -44818549 + (TTTG)n Simple_repeat Simple_repeat 3 74 0 3 1189 5822 71 96 1 chr9 79257653 79258516 -44817656 - L1_Mus3 LINE L1 -2 6636 5692 3 1189 6931 54 21 4 chr9 79258516 79259863 -44816309 + L1Md_F2 LINE L1 5182 6559 -23 3 1189 540 45 0 0 chr9 79259867 79259934 -44816238 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3 1189 2591 109 53 2 chr9 79259938 79260351 -44815821 - L1_Mus3 LINE L1 -209 5674 5241 3 1189 2003 142 6 23 chr9 79260351 79260704 -44815468 - Lx2 LINE L1 -197 6800 6454 3 1189 213 293 0 49 chr9 79260852 79260913 -44815259 + MIRc SINE MIR 75 132 -136 3 1189 198 0 0 0 chr9 79262071 79262093 -44814079 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1189 240 163 0 0 chr9 79262726 79262769 -44813403 + T-rich Low_complexity Low_complexity 1 43 0 3 1189 1721 227 60 3 chr9 79263536 79263885 -44812287 + ORR1D1 LTR MaLR 6 374 0 3 1189 242 233 14 14 chr9 79263934 79264008 -44812164 + A-rich Low_complexity Low_complexity 2 75 0 3 1189 493 264 39 39 chr9 79264060 79264190 -44811982 - RSINE1 SINE B4 -33 132 3 3 1189 225 0 0 0 chr9 79264483 79264508 -44811664 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1189 396 362 48 57 chr9 79265273 79265589 -44810583 - MER68 LTR ERVL -240 323 11 3 1189 6423 79 8 32 chr9 79265749 79266719 -44809453 + L1_Mus3 LINE L1 5688 6634 -4 3 1189 547 303 57 42 chr9 79266728 79266921 -44809251 + B3A SINE B2 3 198 0 3 1189 21 0 0 0 chr9 79267509 79267530 -44808642 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 2844 297 44 15 chr9 79267534 79268531 -44807641 - Lx8 LINE L1 -180 7293 6268 3 1189 602 245 9 121 chr9 79268865 79269088 -44807084 - B3A SINE B2 0 198 1 3 1189 257 318 11 74 chr9 79269278 79269294 -44806878 + MT2B2 LTR ERVL 152 161 -423 3 1189 461 225 29 0 chr9 79269294 79269397 -44806775 + B1F1 SINE Alu 4 106 -11 3 1189 193 145 17 52 chr9 79270286 79270344 -44805828 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 3 1189 297 0 0 0 chr9 79270606 79270639 -44805533 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1189 316 331 71 35 chr9 79271384 79271553 -44804619 - MLT1F1 LTR MaLR 0 569 395 3 1189 5218 216 35 18 chr9 79273041 79274270 -44801902 - Lx9 LINE L1 -1 7643 6394 3 1189 5697 135 1 28 chr9 79274401 79275055 -44801117 - Lx LINE L1 -20 6634 6004 3 1189 1644 64 0 31 chr9 79275055 79275280 -44800892 - L1_Mus1 LINE L1 -1 6566 6349 3 1189 5697 135 1 28 chr9 79275280 79275572 -44800600 - Lx LINE L1 -651 6003 5713 3 1189 367 235 109 70 chr9 79275814 79275853 -44800319 - Lx9 LINE L1 -1268 6376 6339 3 1189 453 36 0 0 chr9 79275853 79275908 -44800264 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1189 367 235 109 70 chr9 79275908 79276069 -44800103 - Lx9 LINE L1 -1306 6338 6168 3 1189 6681 220 48 50 chr9 79276167 79278389 -44797783 - Lx9 LINE L1 -1664 5980 3725 3 1189 7289 207 74 38 chr9 79278384 79279841 -44796331 - Lx9 LINE L1 -2287 3560 2082 3 1189 408 104 0 0 chr9 79279841 79279908 -44796264 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1189 7289 207 74 38 chr9 79279908 79280439 -44795733 - Lx9 LINE L1 -3766 2081 1502 3 1189 1274 174 37 12 chr9 79280440 79280685 -44795487 - MTC LTR MaLR -170 251 1 3 1189 1571 166 55 41 chr9 79280706 79281051 -44795121 - L1_Mur3 LINE L1 -1251 4629 4280 3 1189 1902 295 49 42 chr9 79281040 79281780 -44794392 - Lx9 LINE L1 -374 7270 6526 3 1189 210 306 132 42 chr9 79281825 79281992 -44794180 - MIRb SINE MIR -15 253 72 3 1189 425 303 45 76 chr9 79282349 79282370 -44793802 + B4 SINE B4 71 162 -130 3 1189 775 213 21 0 chr9 79282370 79282511 -44793661 + B1_Mur1 SINE Alu 6 149 0 3 1189 425 303 45 76 chr9 79282511 79282527 -44793645 + B4 SINE B4 163 244 -48 3 1189 1319 62 4 0 chr9 79282540 79282799 -44793373 + (GAAA)n Simple_repeat Simple_repeat 1 260 0 3 1189 733 270 68 14 chr9 79284727 79284934 -44791238 + B4A SINE B4 3 220 -72 3 1189 506 350 146 90 chr9 79288680 79289747 -44786425 - MLT1I-int LTR MaLR -111 1276 150 3 1189 241 377 60 33 chr9 79289815 79289966 -44786206 - MLT1I LTR MaLR -256 155 1 3 1189 203 378 63 0 chr9 79290058 79290169 -44786003 + L2 LINE L2 2464 2581 -838 3 1189 971 199 12 62 chr9 79290292 79290651 -44785521 - RMER17B LTR ERVK -519 439 16 3 1189 199 296 12 123 chr9 79291310 79291391 -44784781 + L2b LINE L2 3295 3366 -9 3 1189 309 51 0 0 chr9 79291513 79291552 -44784620 + (TATG)n Simple_repeat Simple_repeat 4 42 0 3 1189 224 357 90 77 chr9 79291585 79291740 -44784432 - RSINE1 SINE B4 0 165 9 3 1189 250 176 0 19 chr9 79291977 79292029 -44784143 + L1_Mur3 LINE L1 3611 3661 -2219 3 1189 3693 152 26 3 chr9 79292195 79292849 -44783323 + L1_Mur3 LINE L1 3663 4331 -1549 3 1189 1280 143 0 9 chr9 79295098 79295310 -44780862 + MTC LTR MaLR 1 210 -211 3 1189 748 33 0 0 chr9 79295310 79295401 -44780771 - L1Md_F3 LINE L1 -566 6018 5928 3 1189 4759 32 0 0 chr9 79295401 79295958 -44780214 + L1Md_F3 LINE L1 6009 6565 -19 3 1189 1096 177 62 5 chr9 79295966 79296176 -44779996 + MTC LTR MaLR 193 414 -7 3 1189 274 364 32 16 chr9 79296697 79296820 -44779352 + MER20 DNA MER1_type 85 209 -10 3 1189 1357 226 42 3 chr9 79297036 79297373 -44778799 - Lx9 LINE L1 -9 7635 7286 3 1189 251 256 54 32 chr9 79297539 79297632 -44778540 + L2c LINE L2 3252 3346 -41 3 1190 2209 230 70 126 chr9 79298889 79299935 -44776237 + L1_Rod LINE L1 522 1483 -4364 3 1190 1667 248 22 9 chr9 79299940 79300388 -44775784 + L1_Mur3 LINE L1 4626 5079 -801 3 1190 504 122 0 0 chr9 79300494 79300576 -44775596 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1190 232 270 9 65 chr9 79300806 79300913 -44775259 + GA-rich Low_complexity Low_complexity 2 102 0 3 1190 216 97 0 0 chr9 79301791 79301822 -44774350 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1190 21 0 0 0 chr9 79302626 79302647 -44773525 + AT_rich Low_complexity Low_complexity 1 21 0 3 1190 180 0 0 0 chr9 79302974 79302994 -44773178 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1190 1695 144 33 192 chr9 79303041 79303435 -44772737 - RLTR9A2 LTR ERVK 0 383 61 3 1190 1177 55 0 0 chr9 79303435 79303581 -44772591 - B1_Mus1 SINE Alu 0 148 3 4 1190 1695 144 33 192 chr9 79303581 79303640 -44772532 - RLTR9A2 LTR ERVK -323 60 2 3 1190 700 214 64 0 chr9 79304061 79304201 -44771971 + B1_Mur2 SINE Alu 1 149 0 4 1190 1679 239 42 18 chr9 79304358 79304759 -44771413 - MTD LTR MaLR -8 411 1 4 1190 428 335 12 4 chr9 79306287 79306502 -44769670 + MERVL_2A-int LTR ERVL 182 399 -5315 4 1190 396 242 22 0 chr9 79306503 79306594 -44769578 + MTE2b LTR MaLR 1 93 -286 4 1190 282 228 18 0 chr9 79306600 79306657 -44769515 + MTE2b LTR MaLR 58 115 -264 4 1190 1866 209 73 5 chr9 79306661 79307074 -44769098 + MT2A LTR ERVL 2 442 -91 4 1190 796 279 60 3 chr9 79307112 79307461 -44768711 + L1M1 LINE L1 5255 5623 -680 4 1190 468 51 0 0 chr9 79307653 79307712 -44768460 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1190 23 0 0 0 chr9 79308855 79308878 -44767294 + AT_rich Low_complexity Low_complexity 1 23 0 4 1190 224 375 139 0 chr9 79309003 79309147 -44767025 + L2 LINE L2 2550 2713 -706 4 1190 277 291 144 38 chr9 79309441 79309573 -44766599 - MLT1B LTR MaLR -58 332 187 4 1190 256 301 14 0 chr9 79310397 79310470 -44765702 + MER20 DNA MER1_type 146 219 0 3 1190 2819 79 0 13 chr9 79310639 79311035 -44765137 - L1Md_F2 LINE L1 0 6582 6192 4 1190 26 0 0 0 chr9 79311040 79311066 -44765106 + AT_rich Low_complexity Low_complexity 1 26 0 4 1190 183 80 0 0 chr9 79311233 79311258 -44764914 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 1190 537 330 59 17 chr9 79311266 79311503 -44764669 - Lx8 LINE L1 -145 7328 7082 4 1190 9382 21 0 0 chr9 79311583 79312670 -44763502 + L1Md_T LINE L1 4500 5586 -297 4 1190 8934 8 0 0 chr9 79312670 79313666 -44762506 + L1Md_T LINE L1 5587 6582 0 4 1190 340 256 11 32 chr9 79313675 79313768 -44762404 - PB1D10 SINE Alu -13 104 14 4 1190 24 0 0 0 chr9 79314070 79314094 -44762078 + AT_rich Low_complexity Low_complexity 1 24 0 4 1190 214 390 13 0 chr9 79314719 79314796 -44761376 + L3 LINE CR1 4342 4419 -70 4 1190 362 292 0 0 chr9 79315190 79315279 -44760893 + B1F SINE Alu 3 91 -58 4 1190 13754 22 0 1 chr9 79315969 79317602 -44758570 - L1Md_T LINE L1 -1278 4605 2974 4 1190 8540 22 0 0 chr9 79317602 79318595 -44757577 + L1Md_T LINE L1 4594 5586 -297 4 1190 8949 8 0 0 chr9 79318595 79319591 -44756581 + L1Md_T LINE L1 5587 6582 0 4 1190 769 303 32 46 chr9 79320589 79320807 -44755365 - B3A SINE B2 -1 215 1 4 1190 744 253 46 0 chr9 79321223 79321397 -44754775 - B3A SINE B2 -16 182 1 4 1190 362 316 31 0 chr9 79322311 79322409 -44753763 + Lx8 LINE L1 7166 7266 -207 4 1190 276 327 62 62 chr9 79322642 79322902 -44753270 - MIR SINE MIR -10 252 1 4 1190 261 0 0 0 chr9 79324269 79324298 -44751874 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1190 304 200 24 0 chr9 79324480 79324565 -44751607 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 1190 489 104 0 0 chr9 79324571 79324648 -44751524 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 4 1190 897 60 0 0 chr9 79324649 79324765 -44751407 + (GAAAA)n Simple_repeat Simple_repeat 1 116 0 4 1190 556 258 31 62 chr9 79325299 79325460 -44750712 + RSINE1 SINE B4 4 159 -6 4 1190 277 347 21 10 chr9 79325568 79325664 -44750508 + PB1D10 SINE Alu 1 97 -20 4 1190 1272 138 6 172 chr9 79325843 79326175 -44749997 - RMER1C Other Other 0 1342 1066 4 1190 21 0 0 0 chr9 79326344 79326365 -44749807 + AT_rich Low_complexity Low_complexity 1 21 0 4 1190 221 83 0 27 chr9 79327551 79327588 -44748584 + (TTTCC)n Simple_repeat Simple_repeat 3 38 0 4 1190 2078 184 2 33 chr9 79327893 79328287 -44747885 + RMER1B Other Other 683 1064 -2 4 1190 2643 125 19 17 chr9 79328320 79328735 -44747437 - MTC LTR MaLR -5 416 1 4 1190 353 333 0 12 chr9 79328736 79328821 -44747351 + RSINE1 SINE B4 6 89 -76 4 1190 245 246 0 15 chr9 79328838 79328904 -44747268 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1190 249 135 0 0 chr9 79328904 79328956 -44747216 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1190 905 161 6 0 chr9 79328959 79329127 -44747045 + GA-rich Low_complexity Low_complexity 3 171 0 4 1190 22 0 0 0 chr9 79329127 79329149 -44747023 + AT_rich Low_complexity Low_complexity 1 22 0 4 1190 2456 247 112 36 chr9 79329615 79330925 -44745247 + Lx9 LINE L1 5127 6588 -1056 4 1190 645 240 23 70 chr9 79330935 79331150 -44745022 + Lx9 LINE L1 6942 7146 -498 4 1190 4280 110 75 1 chr9 79331708 79332929 -44743243 + L1Md_F LINE L1 387 1701 -4182 4 1190 36194 14 1 7 chr9 79332926 79338131 -44738041 + L1Md_A LINE L1 416 5586 -297 4 1190 8730 20 0 0 chr9 79338131 79339125 -44737047 + L1Md_A LINE L1 5587 6580 -2 4 1190 26 0 0 0 chr9 79339125 79339151 -44737021 + AT_rich Low_complexity Low_complexity 1 26 0 4 1190 18249 71 26 4 chr9 79339151 79341797 -44734375 + L1_Mm LINE L1 1686 4388 -1495 4 1190 287 330 15 59 chr9 79341807 79342010 -44734162 + Lx9 LINE L1 7263 7456 -188 4 1190 216 97 0 0 chr9 79342013 79342044 -44734128 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 4 1190 2432 291 49 25 chr9 79343095 79344314 -44731858 + Lx8 LINE L1 4884 6167 -1306 4 1190 829 93 16 0 chr9 79344314 79344443 -44731729 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 4 1190 1536 311 118 38 chr9 79344443 79344927 -44731245 + Lx8 LINE L1 6168 6664 -809 4 1190 531 43 0 0 chr9 79344927 79344997 -44731175 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 1190 1536 311 118 38 chr9 79344997 79345235 -44730937 + Lx8 LINE L1 6665 6919 -554 4 1190 194 176 20 0 chr9 79345235 79345286 -44730886 + A-rich Low_complexity Low_complexity 4 55 0 4 1190 239 127 0 68 chr9 79345319 79345391 -44730781 + (TTTG)n Simple_repeat Simple_repeat 1 67 0 4 1190 972 81 72 14 chr9 79345391 79345529 -44730643 - B1_Mus2 SINE Alu -1 146 1 4 1190 216 150 46 81 chr9 79345529 79345543 -44730629 + T-rich Low_complexity Low_complexity 2 15 0 4 1190 1120 43 50 0 chr9 79345756 79345895 -44730277 + B1_Mm SINE Alu 2 147 0 4 1190 225 0 0 0 chr9 79346059 79346084 -44730088 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1190 540 258 76 16 chr9 79346251 79346436 -44729736 + B3A SINE B2 3 198 0 4 1190 540 0 0 0 chr9 79347619 79347679 -44728493 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 4 1190 268 383 31 8 chr9 79347772 79347901 -44728271 + MLT1C LTR MaLR 332 463 -4 4 1190 555 307 43 6 chr9 79349023 79349187 -44726985 + B3A SINE B2 29 198 0 4 1190 295 307 70 9 chr9 79349273 79349388 -44726784 - MER3 DNA MER1_type -10 199 78 4 1190 4586 137 30 22 chr9 79350240 79351039 -44725133 + RLTR22_Mur LTR ERVK 1 805 -1043 4 1190 1521 101 22 9 chr9 79351178 79351409 -44724763 - Lx2 LINE L1 0 6997 6764 4 1190 1304 173 40 8 chr9 79351546 79351797 -44724375 + RLTR22_Mur LTR ERVK 1590 1848 0 4 1190 1734 228 81 3 chr9 79351803 79352367 -44723805 - Lx4B LINE L1 -13 6963 6301 4 1190 6620 3 0 0 chr9 79354088 79354857 -44721315 + L1Md_A LINE L1 5854 6582 0 4 1190 1209 107 27 36 chr9 79355260 79355459 -44720713 + L1_Mus3 LINE L1 6417 6611 -27 4 1190 1162 62 7 0 chr9 79355459 79355605 -44720567 + B1_Mm SINE Alu 1 147 0 4 1190 1209 107 27 36 chr9 79355605 79355628 -44720544 + L1_Mus3 LINE L1 6612 6637 -1 4 1190 216 0 0 0 chr9 79355658 79355682 -44720490 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4 1190 26 0 0 0 chr9 79356245 79356271 -44719901 + AT_rich Low_complexity Low_complexity 1 26 0 4 1190 495 310 30 54 chr9 79357045 79357200 -44718972 + RSINE1 SINE B4 3 154 -11 4 1190 413 39 50 25 chr9 79357200 79357280 -44718892 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 4 1190 495 310 30 54 chr9 79357280 79357291 -44718881 + RSINE1 SINE B4 155 165 0 4 1190 456 342 70 31 chr9 79357394 79357623 -44718549 + B4A SINE B4 14 251 -41 4 1190 236 326 0 0 chr9 79357623 79357712 -44718460 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1190 21 0 0 0 chr9 79357718 79357739 -44718433 + AT_rich Low_complexity Low_complexity 1 21 0 4 1190 745 175 119 5 chr9 79358421 79358622 -44717550 + Lx9 LINE L1 7413 7636 -8 4 1190 11190 107 35 5 chr9 79360463 79362978 -44713194 - L1_Mus3 LINE L1 -7 6631 4038 4 1190 246 116 0 0 chr9 79363619 79363662 -44712510 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1190 241 322 83 25 chr9 79366382 79366503 -44709669 - MIR SINE MIR -117 145 18 4 1190 319 273 167 7 chr9 79366959 79367103 -44709069 + HAL1-3A_ME LINE L1 2272 2438 -420 4 1190 433 98 57 38 chr9 79367141 79367247 -44708925 + GA-rich Low_complexity Low_complexity 3 110 0 4 1190 298 275 61 81 chr9 79368085 79368184 -44707988 + B4 SINE B4 169 265 -27 4 1190 477 62 0 0 chr9 79368188 79368253 -44707919 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1190 655 329 19 5 chr9 79368280 79368488 -44707684 + B4A SINE B4 80 290 -2 4 1190 1382 136 17 17 chr9 79369464 79369703 -44706469 + Lx LINE L1 6409 6647 -7 4 1190 180 0 0 0 chr9 79371754 79371774 -44704398 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 1190 506 291 20 33 chr9 79371930 79372083 -44704089 + RSINE1 SINE B4 13 163 -2 4 1190 246 148 0 0 chr9 79372301 79372355 -44703817 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1190 2045 191 19 14 chr9 79372355 79372367 -44703805 - Lx7 LINE L1 -791 6905 6894 4 1190 279 0 0 0 chr9 79372367 79372398 -44703774 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1190 2045 191 19 14 chr9 79372398 79372815 -44703357 - Lx7 LINE L1 -803 6893 6474 4 1190 1495 174 59 3 chr9 79372816 79373122 -44703050 - Lx7 LINE L1 -1134 6562 6240 4 1190 3439 59 0 2 chr9 79373160 79373599 -44702573 + L1Md_F2 LINE L1 6145 6582 0 4 1190 289 272 42 42 chr9 79374758 79374877 -44701295 - L1MB8 LINE L1 -176 6002 5884 4 1190 335 23 23 0 chr9 79375881 79375925 -44700247 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1190 679 252 91 58 chr9 79376016 79376290 -44699882 - Lx8 LINE L1 -933 6540 6258 4 1190 705 215 10 30 chr9 79376299 79376496 -44699676 - Lx4B LINE L1 0 7058 6866 4 1190 254 333 37 19 chr9 79376620 79376727 -44699445 - MLT1A1 LTR MaLR -23 385 277 4 1190 708 237 131 40 chr9 79376828 79377179 -44698993 - Lx9 LINE L1 -7 7637 7255 4 1190 469 219 0 32 chr9 79377185 79377308 -44698864 + Lx9 LINE L1 7121 7239 -405 4 1190 339 355 104 11 chr9 79377580 79377762 -44698410 + MIR SINE MIR 6 204 -64 4 1190 231 36 0 0 chr9 79377776 79377804 -44698368 + (CAT)n Simple_repeat Simple_repeat 3 30 0 4 1190 224 285 67 0 chr9 79378773 79378869 -44697303 + B1F1 SINE Alu 2 139 -10 4 1190 234 105 0 0 chr9 79378949 79378987 -44697185 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1190 938 277 56 0 chr9 79379403 79379670 -44696502 - MTD LTR MaLR -18 401 120 5 1190 595 282 68 9 chr9 79379676 79379898 -44696274 - Lx8 LINE L1 -10 5837 5603 4 1190 2252 151 35 74 chr9 79379905 79380362 -44695810 + RLTR28 LTR ERVL 1 439 -85 5 1190 8088 30 0 2 chr9 79380362 79381410 -44694762 - L1Md_F3 LINE L1 -6 6578 5533 5 1190 404 164 0 0 chr9 79381410 79381477 -44694695 + RLTR28 LTR ERVL 444 510 -14 5 1190 254 229 0 5 chr9 79381490 79381552 -44694620 - Lx7 LINE L1 -2063 5633 5539 5 1190 368 229 32 68 chr9 79381608 79381759 -44694413 - L1M1 LINE L1 -593 5596 5452 5 1190 1054 256 73 15 chr9 79381748 79382144 -44694028 + L1_Mur3 LINE L1 4173 4591 -1289 5 1190 1483 306 9 0 chr9 79382610 79383057 -44693115 + Lx8 LINE L1 6509 6959 -514 5 1190 495 161 11 0 chr9 79383112 79383205 -44692967 - L1_Mm LINE L1 -1291 4592 4499 5 1190 384 307 93 7 chr9 79383228 79383379 -44692793 + Lx8 LINE L1 6956 7119 -354 5 1190 7433 67 5 1 chr9 79383914 79385266 -44690906 + L1_Mus2 LINE L1 5210 6566 0 5 1190 2854 55 0 3 chr9 79385403 79385750 -44690422 + ORR1A1 LTR MaLR 1 346 0 5 1190 6241 68 6 0 chr9 79385750 79386607 -44689565 + ORR1A1-int LTR MaLR 1 862 -930 5 1190 353 85 0 0 chr9 79386608 79386655 -44689517 + L1_Mus2 LINE L1 6325 6371 -195 5 1190 2512 36 2 228 chr9 79386655 79387156 -44689016 + RLTR10 LTR ERVK 1 388 -2 5 1190 7433 45 18 10 chr9 79387160 79388138 -44688034 + RLTR10-int LTR ERVK 3 988 -999 5 1190 8376 18 0 2 chr9 79388215 79389212 -44686960 + RLTR10-int LTR ERVK 990 1984 -3 5 1190 2512 36 2 228 chr9 79389214 79389715 -44686457 + RLTR10 LTR ERVK 1 388 -2 5 1190 7433 45 18 10 chr9 79389719 79390697 -44685475 + RLTR10-int LTR ERVK 3 988 -999 5 1190 8376 18 0 2 chr9 79390774 79391771 -44684401 + RLTR10-int LTR ERVK 990 1984 -3 5 1190 2742 26 2 227 chr9 79391773 79392276 -44683896 + RLTR10 LTR ERVK 1 390 0 5 1190 1450 82 0 0 chr9 79392278 79392474 -44683698 + L1Md_F2 LINE L1 6374 6569 -13 5 1190 713 85 9 0 chr9 79392480 79392586 -44683586 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 5 1190 3814 62 19 8 chr9 79392586 79393103 -44683069 + ORR1A1-int LTR MaLR 868 1390 -402 5 1190 375 244 152 27 chr9 79393505 79393550 -44682622 + L1MEg LINE L1 1238 1299 -4785 5 1190 1632 190 67 8 chr9 79393550 79393922 -44682250 - ORR1B1 LTR MaLR 0 394 1 5 1190 375 244 152 27 chr9 79393922 79394025 -44682147 + L1MEg LINE L1 1300 1415 -4669 5 1190 382 270 29 20 chr9 79394025 79394127 -44682045 + PB1D10 SINE Alu 3 105 -12 5 1190 392 0 21 0 chr9 79394129 79394177 -44681995 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 5 1190 375 244 152 27 chr9 79394177 79394319 -44681853 + L1MEg LINE L1 1416 1565 -4519 5 1190 407 297 34 8 chr9 79394420 79394539 -44681633 + B3A SINE B2 1 122 -76 5 1190 5768 133 25 2 chr9 79394564 79395283 -44680889 + L1_Mur2 LINE L1 3891 4621 -1256 5 1190 245 75 25 0 chr9 79395283 79395323 -44680849 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 1190 5768 133 25 2 chr9 79395323 79395624 -44680548 + L1_Mur2 LINE L1 4622 4933 -944 5 1190 231 36 0 0 chr9 79395624 79395652 -44680520 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1190 4643 46 2 2 chr9 79395711 79396276 -44679896 + L1Md_F2 LINE L1 6005 6569 -13 5 1190 1168 77 0 0 chr9 79396349 79396492 -44679680 + B1_Mus1 SINE Alu 1 143 -5 5 1190 663 48 0 0 chr9 79396495 79396578 -44679594 + (GAA)n Simple_repeat Simple_repeat 2 84 0 5 1190 248 283 94 0 chr9 79397639 79397745 -44678427 + L1MA10 LINE L1 6215 6330 -4 5 1190 742 257 43 24 chr9 79397769 79397980 -44678192 + B3 SINE B2 2 216 0 5 1190 749 299 164 4 chr9 79398085 79398310 -44677862 + B4 SINE B4 28 288 -4 5 1190 29 28 0 0 chr9 79398554 79398590 -44677582 + AT_rich Low_complexity Low_complexity 1 36 0 5 1190 321 313 213 0 chr9 79398635 79398787 -44677385 + Lx8 LINE L1 7169 7326 -147 5 1190 951 18 0 0 chr9 79398787 79398900 -44677272 + (GAAA)n Simple_repeat Simple_repeat 1 113 0 5 1190 321 313 213 0 chr9 79398900 79398996 -44677176 + Lx8 LINE L1 7327 7469 -4 5 1190 351 316 112 41 chr9 79399163 79399430 -44676742 + MLT1B LTR MaLR 98 383 -7 5 1190 247 380 113 23 chr9 79399757 79399876 -44676296 + LTR78 LTR ERV1 488 609 -695 5 1190 594 0 0 0 chr9 79399876 79399942 -44676230 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1190 247 380 113 23 chr9 79399942 79400043 -44676129 + LTR78 LTR ERV1 610 728 -576 5 1190 1407 188 14 4 chr9 79400265 79400542 -44675630 - Lx2B LINE L1 -176 6824 6545 5 1190 376 295 77 77 chr9 79400683 79400955 -44675217 + B4 SINE B4 2 273 -19 5 1190 297 0 0 0 chr9 79400970 79401003 -44675169 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1190 349 347 91 43 chr9 79401044 79401276 -44674896 + L1MEg LINE L1 79 321 -5763 5 1190 384 77 0 0 chr9 79401600 79401652 -44674520 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1190 42 0 0 0 chr9 79401657 79401699 -44674473 + AT_rich Low_complexity Low_complexity 1 42 0 5 1190 1017 168 82 43 chr9 79401714 79401834 -44674338 - RMER4B LTR ERVK -329 256 127 5 1190 1073 87 0 0 chr9 79401834 79401972 -44674200 + B1_Mus2 SINE Alu 1 138 -9 5 1190 182 37 37 0 chr9 79401972 79401999 -44674173 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1190 1017 168 82 43 chr9 79401999 79402108 -44674064 - RMER4B LTR ERVK -459 126 18 5 1190 322 346 262 23 chr9 79402576 79402915 -44673257 + Lx8 LINE L1 6759 7178 -295 5 1190 23 0 0 0 chr9 79403816 79403839 -44672333 + AT_rich Low_complexity Low_complexity 1 23 0 5 1190 1238 86 7 0 chr9 79404830 79405120 -44671052 + (GAAA)n Simple_repeat Simple_repeat 1 292 0 5 1190 198 0 0 0 chr9 79405120 79405142 -44671030 + (GGAA)n Simple_repeat Simple_repeat 1 22 0 5 1190 315 49 0 0 chr9 79406407 79406448 -44669724 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1190 467 101 13 0 chr9 79406473 79406552 -44669620 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 5 1190 2319 78 3 0 chr9 79406762 79407068 -44669104 + L1_Mus2 LINE L1 6260 6566 0 5 1190 23 54 0 0 chr9 79407726 79407763 -44668409 + AT_rich Low_complexity Low_complexity 1 37 0 5 1190 1141 84 0 0 chr9 79408541 79408683 -44667489 + B1_Mus1 SINE Alu 2 143 -5 5 1190 21 36 0 0 chr9 79408708 79408736 -44667436 + AT_rich Low_complexity Low_complexity 1 28 0 5 1190 462 253 214 17 chr9 79408742 79408915 -44667257 + Lx8 LINE L1 6562 6768 -705 5 1190 400 40 0 0 chr9 79409041 79409091 -44667081 - ORR1A2 LTR MaLR 0 326 277 5 1190 702 65 0 0 chr9 79409091 79409183 -44666989 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 5 1190 2179 78 0 0 chr9 79409306 79409588 -44666584 - L1_Mus1 LINE L1 -1 6566 6285 5 1190 1595 111 82 71 chr9 79409588 79409870 -44666302 - ORR1A2 LTR MaLR -42 285 1 5 1190 1166 276 158 0 chr9 79409887 79410249 -44665923 - MTD LTR MaLR 0 419 1 5 1190 383 271 10 40 chr9 79410251 79410351 -44665821 + B3A SINE B2 98 194 -4 5 1190 499 295 57 0 chr9 79410740 79410862 -44665310 + RSINE1 SINE B4 15 143 -22 5 1190 313 227 0 15 chr9 79410978 79411045 -44665127 - Lx5 LINE L1 -795 6255 6190 5 1190 56 39 0 0 chr9 79411045 79411122 -44665050 + AT_rich Low_complexity Low_complexity 1 77 0 5 1190 369 0 0 0 chr9 79411373 79411414 -44664758 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1190 3443 223 27 40 chr9 79411702 79412548 -44663624 + Lx7 LINE L1 6331 7392 -304 5 1190 342 0 0 0 chr9 79412548 79412586 -44663586 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1190 815 174 6 0 chr9 79412813 79412991 -44663181 + GA-rich Low_complexity Low_complexity 1 179 0 5 1190 276 210 139 10 chr9 79413018 79413119 -44663053 + L1M4c LINE L1 2332 2445 -4889 5 1190 422 246 128 29 chr9 79413275 79413447 -44662725 + L1M4c LINE L1 2651 2839 -4169 5 1190 711 276 49 20 chr9 79413670 79414014 -44662158 + L1M4c LINE L1 3343 3696 -3304 5 1190 484 269 14 14 chr9 79414080 79414223 -44661949 - Lx8 LINE L1 -205 7268 7126 5 1190 405 109 75 11 chr9 79414253 79414346 -44661826 - Lx9 LINE L1 -1 7643 7545 5 1190 684 0 0 0 chr9 79414473 79414549 -44661623 + (TTTTG)n Simple_repeat Simple_repeat 2 77 0 5 1190 412 340 143 67 chr9 79415030 79415491 -44660681 - MLT1D LTR MaLR -3 502 7 5 1190 183 232 0 0 chr9 79415680 79415736 -44660436 + A-rich Low_complexity Low_complexity 1 56 0 5 1190 447 19 0 0 chr9 79415923 79415975 -44660197 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1190 537 16 0 0 chr9 79418765 79418827 -44657345 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1190 207 167 0 0 chr9 79418828 79418864 -44657308 + GA-rich Low_complexity Low_complexity 1 36 0 5 1190 823 303 28 38 chr9 79419112 79419605 -44656567 + L1_Mur3 LINE L1 3881 4369 -1478 5 1190 463 234 77 172 chr9 79419618 79419866 -44656306 - ORR1E LTR MaLR -3 367 153 5 1190 929 156 39 0 chr9 79419866 79420020 -44656152 - B2_Mm2 SINE B2 -32 163 4 5 1190 641 247 41 41 chr9 79420020 79420186 -44655986 - ORR1E LTR MaLR -193 166 1 5 1190 342 294 79 62 chr9 79420212 79420632 -44655540 + L1_Mur3 LINE L1 4398 4824 -1056 5 1190 619 307 59 21 chr9 79420762 79421048 -44655124 - Lx9 LINE L1 -213 7431 7135 5 1190 658 308 59 18 chr9 79421049 79421581 -44654591 + L1MA4 LINE L1 4859 5418 -1026 5 1190 393 22 0 0 chr9 79422033 79422079 -44654093 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1190 599 298 102 57 chr9 79422452 79422516 -44653656 + L1MA4 LINE L1 5412 5472 -828 5 1190 3132 65 18 0 chr9 79422516 79422914 -44653258 + MTB_Mm LTR MaLR 3 407 0 5 1190 599 298 102 57 chr9 79422914 79423302 -44652870 + L1MA4 LINE L1 5473 5884 -416 5 1190 305 327 47 6 chr9 79424578 79424747 -44651425 - L1MC4 LINE L1 -827 7215 7040 5 1190 30 45 0 0 chr9 79425227 79425271 -44650901 + AT_rich Low_complexity Low_complexity 1 44 0 5 1190 3808 39 4 0 chr9 79425540 79425997 -44650175 - L1Md_F3 LINE L1 -14 6570 6112 5 1190 635 187 17 109 chr9 79427059 79427233 -44648939 - RMER19C LTR ERVK -2 609 452 5 1190 493 34 0 0 chr9 79427233 79427292 -44648880 + L1Md_F2 LINE L1 5528 5586 -297 5 1190 8352 34 4 1 chr9 79427292 79428285 -44647887 + L1Md_F2 LINE L1 5587 6582 0 5 1190 364 322 133 24 chr9 79428307 79428582 -44647590 + L1M2 LINE L1 2853 3160 -2986 5 1190 772 223 103 18 chr9 79428586 79428810 -44647362 - MTEa LTR MaLR 0 379 137 5 1190 407 271 0 76 chr9 79428850 79429000 -44647172 - B3 SINE B2 -22 173 49 5 1190 452 297 0 0 chr9 79429029 79429130 -44647042 - MTEa LTR MaLR -278 101 1 5 1190 2849 52 0 3 chr9 79429267 79429614 -44646558 + ORR1A0 LTR MaLR 1 346 0 5 1191 1701 253 19 60 chr9 79429715 79430178 -44645994 + RMER19C LTR ERVK 166 609 -2 5 1191 351 238 36 0 chr9 79431058 79431142 -44645030 + MER2 DNA MER2_type 140 226 -119 5 1191 351 275 133 0 chr9 79431271 79431391 -44644781 + MER2 DNA MER2_type 210 345 0 5 1191 922 305 46 30 chr9 79431917 79432285 -44643887 - MTE2b LTR MaLR -4 375 2 5 1191 1580 241 75 13 chr9 79432636 79433023 -44643149 + MTD LTR MaLR 1 411 -8 5 1191 1480 206 87 6 chr9 79433169 79433515 -44642657 - ORR1D1 LTR MaLR 0 374 1 5 1191 206 62 0 30 chr9 79433636 79433669 -44642503 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 5 1191 603 0 0 0 chr9 79433669 79433736 -44642436 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1191 213 108 0 0 chr9 79433888 79433925 -44642247 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 5 1191 233 337 12 0 chr9 79435826 79435909 -44640263 + B4A SINE B4 2 85 -207 6 1191 389 307 50 28 chr9 79436132 79436273 -44639899 + B4A SINE B4 129 272 -20 6 1191 365 214 128 39 chr9 79436492 79436696 -44639476 - L1M4 LINE L1 -615 5559 5338 6 1191 731 243 112 0 chr9 79436703 79436746 -44639426 - MTE2a LTR MaLR 0 379 333 6 1191 330 87 0 0 chr9 79436746 79436792 -44639380 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1191 731 243 112 0 chr9 79436792 79436917 -44639255 - MTE2a LTR MaLR -47 332 193 6 1191 1731 228 48 24 chr9 79437699 79438153 -44638019 + Lx7 LINE L1 6647 7111 -585 6 1191 181 139 24 48 chr9 79438280 79438363 -44637809 + T-rich Low_complexity Low_complexity 4 84 0 6 1191 1622 241 124 29 chr9 79438540 79439023 -44637149 + MTD-int LTR MaLR 380 908 -350 6 1191 2299 258 63 15 chr9 79439024 79439677 -44636495 - Lx6 LINE L1 -33 7427 6744 6 1191 2961 218 12 25 chr9 79440109 79440742 -44635430 - Lx6 LINE L1 -698 6762 6138 6 1191 3489 23 2 0 chr9 79440742 79441137 -44635035 - MTA_Mm LTR MaLR 0 396 1 6 1191 2961 218 12 25 chr9 79441137 79441186 -44634986 - Lx6 LINE L1 -1323 6137 6089 6 1191 665 239 14 61 chr9 79441190 79441404 -44634768 + MTD-int LTR MaLR 1050 1253 -5 6 1191 1671 236 56 13 chr9 79441408 79441785 -44634387 + MTD LTR MaLR 12 404 -15 6 1191 475 377 70 35 chr9 79442498 79442811 -44633361 + MLT1J LTR MaLR 39 362 -150 6 1191 238 320 13 0 chr9 79442865 79442940 -44633232 - ID4_ SINE ID -3 80 5 6 1191 521 83 0 0 chr9 79442985 79443057 -44633115 + B1_Mus2 SINE Alu 2 73 -74 6 1191 710 160 59 0 chr9 79443065 79443184 -44632988 + Lx5 LINE L1 6810 6935 -115 6 1191 479 18 0 0 chr9 79443184 79443241 -44632931 + B1_Mus2 SINE Alu 79 135 -12 6 1191 225 0 0 0 chr9 79443241 79443266 -44632906 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6 1191 252 324 74 28 chr9 79443266 79443343 -44632829 - B1F1 SINE Alu -42 107 24 6 1191 3661 151 14 11 chr9 79443580 79444222 -44631950 - Lx5 LINE L1 -288 6762 6119 6 1191 1235 167 92 11 chr9 79444235 79444496 -44631676 + Lx5 LINE L1 6769 7050 0 6 1191 606 120 0 57 chr9 79444630 79444754 -44631418 + L1_Mus4 LINE L1 6504 6620 -16 6 1191 248 267 46 65 chr9 79447396 79447504 -44628668 - MTE-int LTR MaLR -363 1217 1112 6 1191 198 229 0 0 chr9 79449035 79449105 -44627067 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 1191 192 182 0 0 chr9 79449693 79449737 -44626435 + A-rich Low_complexity Low_complexity 1 44 0 6 1191 306 0 0 0 chr9 79450191 79450225 -44625947 + (TAA)n Simple_repeat Simple_repeat 2 35 0 6 1191 759 248 7 0 chr9 79450377 79450526 -44625646 + RSINE1 SINE B4 3 152 -13 6 1191 192 125 0 0 chr9 79450526 79450558 -44625614 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1191 1120 25 19 12 chr9 79450558 79450720 -44625452 + (TAGA)n Simple_repeat Simple_repeat 2 164 0 6 1191 219 36 0 0 chr9 79451253 79451281 -44624891 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 6 1191 432 0 0 0 chr9 79452111 79452159 -44624013 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1191 30 27 0 0 chr9 79453031 79453068 -44623104 + AT_rich Low_complexity Low_complexity 1 37 0 6 1191 1076 166 36 18 chr9 79453223 79453444 -44622728 - URR1A DNA MER1_type -1 225 1 6 1191 368 317 16 8 chr9 79454141 79454265 -44621907 + L2 LINE L2 2716 2840 -579 6 1191 309 109 0 0 chr9 79454576 79454622 -44621550 + HAL1-3A_ME LINE L1 1973 2018 -840 6 1191 390 204 0 0 chr9 79454627 79454730 -44621442 + (CA)n Simple_repeat Simple_repeat 2 104 0 6 1191 298 277 68 0 chr9 79454789 79454919 -44621253 - Lx9 LINE L1 -315 7329 7142 6 1191 282 282 0 0 chr9 79455304 79455375 -44620797 - ID4_ SINE ID -10 73 3 6 1191 321 290 97 71 chr9 79455457 79455724 -44620448 - B4 SINE B4 -18 274 1 6 1191 183 42 0 0 chr9 79456617 79456641 -44619531 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 1191 236 247 0 119 chr9 79458448 79458464 -44617708 + MT2B2 LTR ERVL 152 240 -344 6 1191 458 181 0 24 chr9 79458464 79458549 -44617623 + B1F SINE Alu 3 85 -64 6 1191 231 61 0 0 chr9 79458885 79458918 -44617254 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1191 284 188 0 15 chr9 79460556 79460621 -44615551 - Lx7 LINE L1 -18 7678 7615 6 1191 311 312 34 51 chr9 79461236 79461249 -44614923 + ID SINE ID 70 80 -144 6 1191 375 287 0 57 chr9 79461249 79461371 -44614801 + PB1D10 SINE Alu 1 115 -2 6 1191 302 312 0 0 chr9 79461381 79461458 -44614714 + ID4 SINE ID 3 79 -4 6 1191 307 247 27 0 chr9 79462367 79462440 -44613732 + ID4 SINE ID 9 83 0 6 1191 567 312 0 0 chr9 79463485 79463613 -44612559 - RSINE1 SINE B4 -36 129 2 6 1191 611 307 43 114 chr9 79464537 79464905 -44611267 - MER2 DNA MER2_type 0 345 4 6 1191 318 87 0 0 chr9 79465106 79465152 -44611020 + (TATG)n Simple_repeat Simple_repeat 2 47 0 6 1191 641 134 0 0 chr9 79465630 79465742 -44610430 - Lx2B LINE L1 -1 6999 6888 6 1191 425 0 0 52 chr9 79466097 79466155 -44610017 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 6 1191 596 102 0 0 chr9 79466160 79466248 -44609924 - B1_Mus2 SINE Alu -18 129 42 6 1191 973 137 0 46 chr9 79466248 79466508 -44609664 + (TCTCTG)n Simple_repeat Simple_repeat 1 247 0 6 1191 352 86 17 33 chr9 79466510 79466570 -44609602 - B1_Mus1 SINE Alu -88 60 2 6 1191 1330 310 90 41 chr9 79466754 79467345 -44608827 + Lx8 LINE L1 6670 7289 -184 6 1191 333 131 34 45 chr9 79468000 79468088 -44608084 - Lx6 LINE L1 -26 7434 7348 6 1191 311 354 43 43 chr9 79469280 79469652 -44606520 + Lx8 LINE L1 7095 7466 -7 6 1191 760 299 31 5 chr9 79469729 79469921 -44606251 + B3 SINE B2 5 201 -15 6 1191 216 0 0 0 chr9 79469922 79469946 -44606226 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 6 1191 608 301 125 0 chr9 79470034 79470290 -44605882 + Lx8 LINE L1 6811 7098 -375 6 1191 829 140 0 35 chr9 79470471 79470641 -44605531 + L1_Mus3 LINE L1 6471 6634 -4 6 1191 22 35 0 0 chr9 79470645 79470674 -44605498 + AT_rich Low_complexity Low_complexity 1 29 0 6 1191 269 235 19 29 chr9 79470700 79470805 -44605367 + (TA)n Simple_repeat Simple_repeat 1 104 0 6 1191 5427 212 75 63 chr9 79471514 79472898 -44603274 + Lx7 LINE L1 6017 7434 -262 6 1191 690 47 0 0 chr9 79472898 79472984 -44603188 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1191 5427 212 75 63 chr9 79472984 79473138 -44603034 + Lx7 LINE L1 7435 7574 -122 6 1191 623 228 68 30 chr9 79473129 79473223 -44602949 + Lx7 LINE L1 7453 7559 -137 6 1191 1254 40 0 0 chr9 79473223 79473371 -44602801 - B1_Mus1 SINE Alu 0 148 1 6 1191 623 228 68 30 chr9 79473371 79473511 -44602661 + Lx7 LINE L1 7560 7696 0 6 1191 564 274 34 11 chr9 79474291 79474468 -44601704 + B3A SINE B2 3 183 -15 6 1191 203 184 0 0 chr9 79474541 79474579 -44601593 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 1191 1779 310 43 35 chr9 79475008 79475789 -44600383 + Lx8 LINE L1 6571 7358 -115 6 1191 336 143 0 0 chr9 79476036 79476092 -44600080 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1191 327 296 0 0 chr9 79478827 79478908 -44597264 + ID4_ SINE ID 3 83 0 6 1191 1172 58 0 0 chr9 79481762 79481901 -44594271 + B1_Mus2 SINE Alu 4 142 -5 6 1191 308 23 45 0 chr9 79481908 79481952 -44594220 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 6 1191 468 290 109 19 chr9 79482195 79482379 -44593793 + MIRb SINE MIR 36 235 -33 6 1191 8563 14 0 0 chr9 79483508 79484474 -44591698 + L1Md_A LINE L1 5617 6582 0 6 1191 415 349 45 27 chr9 79484936 79485160 -44591012 + L1MC1 LINE L1 6106 6333 0 6 1191 1120 102 0 17 chr9 79485436 79485616 -44590556 + (GGAGA)n Simple_repeat Simple_repeat 1 177 0 6 1191 783 32 0 0 chr9 79485619 79485713 -44590459 + (GAGAA)n Simple_repeat Simple_repeat 1 94 0 6 1191 848 188 227 0 chr9 79486656 79486832 -44589340 + B3 SINE B2 1 216 0 6 1191 3557 63 25 8 chr9 79486835 79487311 -44588861 + L1_Mus3 LINE L1 6154 6637 -1 6 1191 970 135 0 7 chr9 79488117 79488259 -44587913 - B1_Mur3 SINE Alu -2 147 7 6 1191 583 250 29 82 chr9 79488259 79488285 -44587887 - B4 SINE B4 -67 223 65 6 1191 351 104 0 0 chr9 79488514 79488562 -44587610 - PB1D9 SINE Alu -65 55 8 6 1191 390 136 0 0 chr9 79488712 79488778 -44587394 + Lx3C LINE L1 6896 6961 -15 6 1191 243 0 0 0 chr9 79488778 79488805 -44587367 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 6 1191 1098 163 17 71 chr9 79488903 79489141 -44587031 + URR1A DNA MER1_type 1 225 -1 6 1191 458 227 104 58 chr9 79490186 79490359 -44585813 - Lx8 LINE L1 -32 7441 7261 6 1191 840 255 30 60 chr9 79490539 79490806 -44585366 + RLTR11A2 LTR ERVK 3 261 -266 6 1191 578 214 62 18 chr9 79490892 79491069 -44585103 + RLTR11A2 LTR ERVK 284 501 -27 6 1191 3058 148 23 23 chr9 79491102 79491629 -44584543 + RLTR11A2 LTR ERVK 1 527 0 6 1191 232 295 33 0 chr9 79492073 79492134 -44584038 - MIR3 SINE MIR -17 191 129 6 1191 233 198 146 68 chr9 79492564 79492667 -44583505 + RLTR21 LTR ERVK 1447 1557 -15 6 1191 240 301 24 24 chr9 79492844 79492929 -44583243 + MER5B DNA MER1_type 62 146 -32 6 1191 24 0 0 0 chr9 79493432 79493456 -44582716 + AT_rich Low_complexity Low_complexity 1 24 0 6 1191 2259 80 9 3 chr9 79495945 79496260 -44579912 - L1_Mus4 LINE L1 -3 6633 6317 6 1191 359 311 91 36 chr9 79497209 79497319 -44578853 + 5S rRNA rRNA 1 116 -5 6 1191 564 130 26 0 chr9 79498174 79498289 -44577883 + (TA)n Simple_repeat Simple_repeat 2 119 0 6 1191 1251 82 41 46 chr9 79498344 79498562 -44577610 - Lx LINE L1 -1 6653 6437 6 1191 472 176 0 9 chr9 79499643 79499731 -44576441 + B1_Mur2 SINE Alu 35 143 -6 6 1191 195 261 0 42 chr9 79499952 79500000 -44576172 + L2c LINE L2 3330 3375 -12 6 1191 258 261 29 5 chr9 79500184 79500279 -44575893 + Lx9 LINE L1 6962 7014 -459 1 1191 652 309 4 12 chr9 79500262 79500521 -44575651 + Lx9 LINE L1 7213 7469 -175 1 1191 579 29 0 0 chr9 79500530 79500599 -44575573 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1191 862 189 0 26 chr9 79500621 79500773 -44575399 + B1_Mur2 SINE Alu 2 149 0 3 1191 287 224 0 23 chr9 79500784 79500871 -44575301 + GA-rich Low_complexity Low_complexity 4 88 0 4 1191 24 0 0 0 chr9 79501000 79501024 -44575148 + AT_rich Low_complexity Low_complexity 1 24 0 5 1191 503 252 184 41 chr9 79503526 79503770 -44572402 + MLT1A0 LTR MaLR 6 284 -81 6 1191 248 271 17 0 chr9 79503772 79503831 -44572341 - ID4 SINE ID 0 83 24 7 1191 400 270 9 35 chr9 79503894 79504009 -44572163 - RSINE1 SINE B4 -51 114 3 8 1191 456 259 34 43 chr9 79504016 79504133 -44572039 - PB1D10 SINE Alu -1 116 1 9 1191 326 252 95 70 chr9 79504133 79504219 -44571953 + MLT1A0 LTR MaLR 378 467 0 6 1191 1079 249 51 8 chr9 79504809 79505044 -44571128 + ORR1D2 LTR MaLR 2 246 -124 1 1191 449 275 51 36 chr9 79505685 79505881 -44570291 + L1_Mur3 LINE L1 3268 3481 -2366 1 1191 276 272 0 21 chr9 79505925 79506019 -44570153 + Lx8 LINE L1 7380 7471 -2 1 1191 284 292 42 95 chr9 79506020 79506048 -44570124 + L1M2 LINE L1 3497 3523 -2623 1 1191 635 269 0 0 chr9 79506048 79506193 -44569979 + B1_Mur1 SINE Alu 3 147 -2 1 1191 616 263 30 65 chr9 79506193 79506512 -44569660 + L1M2 LINE L1 3524 3823 -2320 1 1191 764 312 92 44 chr9 79506501 79506708 -44569464 + L1M2 LINE L1 4424 4660 -1483 1 1191 234 0 0 0 chr9 79506708 79506734 -44569438 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1191 764 312 92 44 chr9 79506734 79507145 -44569027 + L1M2 LINE L1 4661 5072 -1071 1 1191 398 18 0 0 chr9 79507149 79507204 -44568968 + L1Md_T LINE L1 6528 6582 0 1 1191 352 218 70 0 chr9 79507927 79508022 -44568150 + MER33 DNA MER1_type 2 111 -98 1 1191 278 283 20 0 chr9 79508084 79508183 -44567989 + MER33 DNA MER1_type 224 324 0 1 1191 1104 133 122 48 chr9 79509449 79509678 -44566494 - Lx4A LINE L1 0 7058 6813 1 1191 883 147 28 7 chr9 79510523 79510667 -44565505 - B1_Mus2 SINE Alu 0 147 1 1 1191 22 0 0 0 chr9 79510855 79510877 -44565295 + AT_rich Low_complexity Low_complexity 1 22 0 2 1191 2195 307 80 20 chr9 79510923 79511973 -44564199 + Lx8 LINE L1 6356 7468 -5 2 1191 190 305 0 48 chr9 79512139 79512201 -44563971 - L4 LINE RTE -1881 148 90 2 1191 24279 140 25 37 chr9 79512469 79516048 -44560124 + Lx3B LINE L1 802 4445 -1441 2 1191 768 22 0 0 chr9 79516048 79516138 -44560034 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 2 1191 24279 125 30 24 chr9 79516138 79518762 -44557410 + Lx3B LINE L1 4446 6972 -1 2 1191 442 68 40 0 chr9 79518818 79518892 -44557280 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 2 1191 195 42 0 0 chr9 79518912 79518936 -44557236 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 2 1191 691 243 0 7 chr9 79518936 79519073 -44557099 - B1_Mur2 SINE Alu -11 138 3 2 1191 965 157 124 10 chr9 79520019 79520212 -44555960 + B3 SINE B2 2 216 0 2 1191 273 171 63 0 chr9 79520341 79520452 -44555720 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 2 1191 192 152 0 0 chr9 79520463 79520496 -44555676 + (ACATG)n Simple_repeat Simple_repeat 2 34 0 3 1191 387 217 47 12 chr9 79525260 79525364 -44550808 - B3A SINE B2 -79 116 1 3 1191 25 51 0 0 chr9 79529671 79529710 -44546462 + AT_rich Low_complexity Low_complexity 1 39 0 3 1191 260 111 0 22 chr9 79530108 79530154 -44546018 + (TAA)n Simple_repeat Simple_repeat 2 46 0 3 1191 2335 91 48 6 chr9 79531006 79531361 -44544811 + Lx3_Mus LINE L1 6341 6710 -299 3 1191 26 0 0 0 chr9 79531420 79531446 -44544726 + AT_rich Low_complexity Low_complexity 1 26 0 3 1191 260 331 49 42 chr9 79531575 79531717 -44544455 - MIRb SINE MIR -48 220 78 3 1191 384 272 123 53 chr9 79534519 79534565 -44541607 - MT2B2 LTR ERVL -224 360 179 3 1191 915 49 32 8 chr9 79534565 79534689 -44541483 - B1_Mus1 SINE Alu -6 142 16 3 1191 342 45 0 0 chr9 79535279 79535323 -44540849 + (CTG)n Simple_repeat Simple_repeat 1 44 0 3 1191 1249 252 86 40 chr9 79536299 79536778 -44539394 + Lx8 LINE L1 6973 7473 0 4 1191 210 147 0 0 chr9 79536841 79536875 -44539297 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1191 303 28 0 0 chr9 79538965 79539001 -44537171 + (TTC)n Simple_repeat Simple_repeat 2 37 0 4 1191 279 0 0 0 chr9 79539147 79539178 -44536994 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1191 298 368 19 9 chr9 79540505 79540612 -44535560 + PB1D10 SINE Alu 1 108 -9 4 1191 3258 51 2 9 chr9 79540647 79541066 -44535106 + L1Md_F2 LINE L1 6167 6582 0 4 1191 644 254 29 26 chr9 79541975 79542172 -44534000 + B3 SINE B2 1 189 -6 4 1191 699 212 7 43 chr9 79542254 79542392 -44533780 + B1_Mur1 SINE Alu 9 141 -8 4 1191 860 170 17 11 chr9 79542392 79542737 -44533435 + GA-rich Low_complexity Low_complexity 1 346 0 4 1191 738 162 18 12 chr9 79542765 79542934 -44533238 + GA-rich Low_complexity Low_complexity 4 173 0 4 1191 1044 92 23 11 chr9 79542939 79543114 -44533058 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 4 1191 258 304 19 10 chr9 79543319 79543422 -44532750 + MIRb SINE MIR 159 266 -2 5 1191 764 74 9 0 chr9 79543580 79543688 -44532484 + (TCC)n Simple_repeat Simple_repeat 2 110 0 5 1191 252 120 0 0 chr9 79543995 79544045 -44532127 + (A)n Simple_repeat Simple_repeat 1 50 0 5 1191 346 276 157 43 chr9 79544624 79544719 -44531453 + L1MB5 LINE L1 5703 5807 -367 5 1191 674 239 8 0 chr9 79544719 79544849 -44531323 + B1_Mur1 SINE Alu 3 133 -16 5 1191 346 276 157 43 chr9 79544849 79544988 -44531184 + L1MB5 LINE L1 5808 5964 -210 5 1191 363 288 171 37 chr9 79545910 79546139 -44530033 + B4A SINE B4 5 265 -27 5 1191 482 0 0 17 chr9 79546139 79546198 -44529974 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1191 340 288 171 37 chr9 79546198 79546213 -44529959 + B4 SINE B4 266 281 -11 5 1191 348 24 0 0 chr9 79546538 79546579 -44529593 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1191 527 172 0 41 chr9 79546813 79546934 -44529238 - BC1_Mm scRNA scRNA -25 127 12 5 1191 28 0 0 0 chr9 79547692 79547720 -44528452 + AT_rich Low_complexity Low_complexity 1 28 0 5 1191 502 270 90 17 chr9 79547785 79547962 -44528210 + B4A SINE B4 3 192 -100 6 1191 850 240 65 3 chr9 79549441 79549734 -44526438 + Lx9 LINE L1 7292 7602 -42 6 1191 28 48 0 0 chr9 79549743 79549785 -44526387 + AT_rich Low_complexity Low_complexity 1 42 0 6 1191 248 277 92 59 chr9 79550321 79550339 -44525833 + ID_B1 SINE B4 79 159 -65 6 1191 508 170 53 0 chr9 79550339 79550433 -44525739 + PB1D9 SINE Alu 13 111 -9 6 1191 285 152 24 37 chr9 79550441 79550462 -44525710 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 6 1191 435 38 0 0 chr9 79550462 79550515 -44525657 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1191 285 152 24 37 chr9 79550515 79550575 -44525597 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 6 1191 56 61 0 0 chr9 79553910 79554008 -44522164 + AT_rich Low_complexity Low_complexity 1 98 0 6 1191 232 197 13 38 chr9 79554606 79554685 -44521487 + (TTATA)n Simple_repeat Simple_repeat 5 81 0 6 1191 185 83 0 27 chr9 79554990 79555027 -44521145 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1191 1237 48 0 0 chr9 79555035 79555181 -44520991 - B1_Mus2 SINE Alu 0 147 2 7 1191 24 0 0 0 chr9 79558132 79558156 -44518016 + AT_rich Low_complexity Low_complexity 1 24 0 7 1191 251 88 0 0 chr9 79558714 79558748 -44517424 - tRNA-Gly-GGA tRNA tRNA -37 38 5 7 1191 1236 84 0 0 chr9 79558916 79559095 -44517077 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 7 1191 243 267 0 0 chr9 79559518 79559604 -44516568 + (TGGA)n Simple_repeat Simple_repeat 4 89 0 7 1191 2972 111 75 27 chr9 79559767 79560250 -44515922 + Lx4A LINE L1 6130 6635 -423 7 1192 21 57 0 0 chr9 79560764 79560799 -44515373 + AT_rich Low_complexity Low_complexity 1 35 0 7 1192 29 0 0 0 chr9 79560872 79560901 -44515271 + AT_rich Low_complexity Low_complexity 1 29 0 7 1192 638 301 73 45 chr9 79561092 79561405 -44514767 + MER33 DNA MER1_type 1 322 -2 7 1192 414 0 0 0 chr9 79563711 79563757 -44512415 + (TAA)n Simple_repeat Simple_repeat 3 48 0 8 1192 21 0 0 0 chr9 79567170 79567191 -44508981 + GC_rich Low_complexity Low_complexity 1 21 0 8 1192 228 150 0 0 chr9 79569710 79569750 -44506422 - ORR1C2 LTR MaLR 0 384 345 8 1192 776 169 34 40 chr9 79569782 79569930 -44506242 - B1_Mur4 SINE Alu -1 149 3 8 1192 675 90 0 0 chr9 79569931 79570031 -44506141 - ORR1C2 LTR MaLR -284 100 1 8 1192 726 171 14 0 chr9 79570762 79570908 -44505264 + B1_Mur3 SINE Alu 2 149 0 8 1192 802 201 39 33 chr9 79571542 79571722 -44504450 + ORR1D1 LTR MaLR 1 181 -193 8 1192 767 62 69 4 chr9 79571722 79572277 -44503895 + (TC)n Simple_repeat Simple_repeat 1 591 0 8 1192 294 195 0 0 chr9 79572292 79572379 -44503793 + CT-rich Low_complexity Low_complexity 2 88 0 8 1192 688 207 25 2 chr9 79572379 79572541 -44503631 + ORR1D1 LTR MaLR 195 374 0 8 1192 4885 209 60 91 chr9 79572541 79573145 -44503027 + ORR1D1-int LTR MaLR 1 577 -793 8 1192 1647 189 22 16 chr9 79573145 79573467 -44502705 + Lx4A LINE L1 6735 7058 0 8 1192 4885 209 60 91 chr9 79573467 79574274 -44501898 + ORR1D1-int LTR MaLR 578 1369 -1 8 1192 1621 202 65 11 chr9 79574275 79574502 -44501670 + ORR1D1 LTR MaLR 1 228 -146 8 1192 288 0 0 0 chr9 79574502 79574534 -44501638 + (CCTG)n Simple_repeat Simple_repeat 3 34 0 8 1192 1621 202 65 11 chr9 79574534 79574661 -44501511 + ORR1D1 LTR MaLR 229 373 -1 8 1192 600 282 71 5 chr9 79574804 79575028 -44501144 - LTR40a LTR ERVL -278 241 3 9 1192 940 280 7 37 chr9 79575297 79575568 -44500604 + B4A SINE B4 10 272 -20 9 1192 420 20 0 0 chr9 79575585 79575634 -44500538 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1192 186 71 0 0 chr9 79576083 79576111 -44500061 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1192 222 208 0 0 chr9 79576731 79576779 -44499393 + (CATA)n Simple_repeat Simple_repeat 3 50 0 9 1192 2357 138 41 25 chr9 79576903 79577080 -44499092 - RMER4A LTR ERVK -11 455 273 9 1192 360 0 0 0 chr9 79577080 79577120 -44499052 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 9 1192 2357 138 41 25 chr9 79577120 79577381 -44498791 - RMER4A LTR ERVK -194 272 10 9 1192 841 278 98 4 chr9 79579864 79580110 -44496062 + B4A SINE B4 1 269 -23 9 1192 342 45 0 0 chr9 79580110 79580154 -44496018 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1192 473 263 174 17 chr9 79580160 79580516 -44495656 + L1ME1 LINE L1 5696 6107 -72 9 1192 522 318 74 4 chr9 79580543 79580778 -44495394 + MLT2B3 LTR ERVL 211 504 -50 1 1192 921 246 33 8 chr9 79580785 79581027 -44495145 + L1_Rod LINE L1 5532 5779 -68 1 1192 466 340 31 0 chr9 79581128 79581319 -44494853 - B3A SINE B2 0 198 2 1 1192 2284 143 11 8 chr9 79581420 79581786 -44494386 + ORR1B2 LTR MaLR 1 367 0 1 1192 432 0 0 0 chr9 79582328 79582376 -44493796 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1192 375 23 0 0 chr9 79582376 79582419 -44493753 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1192 1161 55 7 0 chr9 79582494 79582639 -44493533 - B1_Mus2 SINE Alu 0 147 2 1 1192 394 173 87 0 chr9 79582754 79582858 -44493314 - Lx9 LINE L1 0 7644 7532 1 1192 1702 186 28 3 chr9 79582890 79583209 -44492963 - Lx9 LINE L1 -186 7458 7132 1 1192 232 265 97 10 chr9 79583469 79583572 -44492600 + RMER10A LTR ERVL 318 429 -13 1 1192 456 212 32 56 chr9 79583582 79583707 -44492465 + B3 SINE B2 85 206 -10 1 1192 307 192 136 27 chr9 79583714 79583851 -44492321 + L1M LINE L1 5316 5478 -705 1 1192 1029 192 27 45 chr9 79583864 79584352 -44491820 - RMER17C LTR ERVK 0 410 19 1 1192 875 190 30 116 chr9 79585251 79585519 -44490653 - RLTR42-int LTR ERVK -1763 4374 4130 1 1192 858 127 22 0 chr9 79585549 79585683 -44490489 + B1_Mus1 SINE Alu 6 142 -6 1 1192 266 0 29 0 chr9 79585685 79585719 -44490453 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1192 968 178 41 80 chr9 79585719 79586184 -44489988 - RMER17C LTR ERVK -519 439 1 1 1192 412 164 14 0 chr9 79586229 79586302 -44489870 - RLTR42-int LTR ERVK -2028 4109 4036 1 1192 253 111 0 0 chr9 79586413 79586449 -44489723 - RLTR42-int LTR ERVK -2168 3969 3934 1 1192 312 229 12 12 chr9 79586657 79586741 -44489431 - RLTR42-int LTR ERVK -2868 3269 3186 1 1192 480 272 84 121 chr9 79586782 79587137 -44489035 - RLTR42-int LTR ERVK -2944 3193 2852 1 1192 740 278 53 122 chr9 79587173 79587739 -44488433 - RLTR42-int LTR ERVK -3261 2876 2350 1 1192 1090 98 84 28 chr9 79587739 79587917 -44488255 + B2_Mm2 SINE B2 1 188 -7 1 1192 1041 173 38 49 chr9 79587949 79588216 -44487956 - RLTR42-int LTR ERVK -3396 2126 1863 1 1192 353 195 0 139 chr9 79588486 79588545 -44487627 - RLTR42-int LTR ERVK -3855 1667 1617 1 1192 294 95 0 0 chr9 79588545 79588587 -44487585 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1192 353 195 0 139 chr9 79588587 79588628 -44487544 - RLTR42-int LTR ERVK -3906 1616 1581 1 1192 276 164 35 92 chr9 79588657 79588744 -44487428 - RLTR42-int LTR ERVK -5160 977 896 1 1192 663 124 106 40 chr9 79589007 79589047 -44487125 + Lx2 LINE L1 6826 6866 -131 1 1192 216 0 0 0 chr9 79589047 79589071 -44487101 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 1 1192 663 131 107 45 chr9 79589071 79589198 -44486974 + Lx2 LINE L1 6867 6998 -2 1 1192 4068 260 82 23 chr9 79589542 79590732 -44485440 + Lx8 LINE L1 6214 7473 0 1 1192 1209 48 7 0 chr9 79590756 79590902 -44485270 + B1_Mm SINE Alu 1 147 0 1 1192 800 254 182 27 chr9 79590979 79591084 -44485088 + L1MA8 LINE L1 5682 5786 -505 1 1192 321 89 0 0 chr9 79591084 79591129 -44485043 + (CAGG)n Simple_repeat Simple_repeat 3 47 0 1 1192 800 254 182 27 chr9 79591129 79591512 -44484660 + L1MA8 LINE L1 5787 6246 -45 1 1192 744 258 0 53 chr9 79591512 79591721 -44484451 + B3A SINE B2 1 198 0 1 1192 3385 18 37 0 chr9 79591909 79592291 -44483881 - MTA_Mm LTR MaLR 0 396 1 1 1192 227 29 57 0 chr9 79592832 79592867 -44483305 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1192 1426 152 211 37 chr9 79592942 79593269 -44482903 + ORR1C2 LTR MaLR 1 384 0 1 1192 351 239 0 0 chr9 79593515 79593603 -44482569 + CT-rich Low_complexity Low_complexity 5 92 0 1 1192 410 331 122 44 chr9 79593637 79593956 -44482216 + MLT1A LTR MaLR 17 360 -14 1 1192 365 292 129 36 chr9 79594176 79594400 -44481772 + Tigger1 DNA MER2_type 22 266 -2152 1 1192 1468 286 155 17 chr9 79594412 79595117 -44481055 + Tigger1 DNA MER2_type 314 1115 -1303 1 1192 308 243 239 18 chr9 79595190 79595303 -44480869 - B1_Mur4 SINE Alu -10 140 3 1 1192 256 267 27 0 chr9 79595310 79595385 -44480787 + Tigger1 DNA MER2_type 1381 1457 -961 1 1192 319 214 250 16 chr9 79595518 79595921 -44480251 - L1MA4A LINE L1 -423 5880 5352 1 1192 407 268 188 47 chr9 79595921 79596113 -44480059 - B4 SINE B4 -73 219 1 1 1192 688 311 66 4 chr9 79596248 79596519 -44479653 - L1M2 LINE L1 -983 5160 4873 1 1192 731 251 82 0 chr9 79596594 79596789 -44479383 - B3 SINE B2 -4 212 2 1 1192 439 247 58 32 chr9 79596846 79597001 -44479171 - RSINE1 SINE B4 -5 160 2 1 1192 302 286 154 60 chr9 79597034 79597183 -44478989 - RSINE1 SINE B4 0 165 3 1 1192 415 264 83 6 chr9 79597185 79597341 -44478831 + Tigger1 DNA MER2_type 2228 2395 -23 1 1192 357 160 160 0 chr9 79597906 79597981 -44478191 - B1_Mus1 SINE Alu -60 88 2 1 1192 342 250 39 115 chr9 79598612 79598820 -44477352 + B3A SINE B2 2 193 -5 1 1192 1334 96 16 16 chr9 79599129 79599320 -44476852 - B2_Mm2 SINE B2 -1 194 4 1 1192 2210 120 41 96 chr9 79599742 79600158 -44476014 + RLTR9C LTR ERVK 1 393 0 1 1192 266 253 44 33 chr9 79602067 79602157 -44474015 + PB1D10 SINE Alu 21 111 -6 1 1192 1138 82 7 0 chr9 79604549 79604695 -44471477 - B1_Mus2 SINE Alu 0 147 1 1 1192 252 0 0 0 chr9 79606178 79606206 -44469966 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1192 340 170 260 0 chr9 79606744 79606844 -44469328 + B1_Mus1 SINE Alu 2 127 -21 1 1192 198 91 0 0 chr9 79608668 79608701 -44467471 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1192 1239 96 51 0 chr9 79608834 79609012 -44467160 + B2_Mm1t SINE B2 1 187 -6 1 1192 540 0 0 0 chr9 79610731 79610791 -44465381 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 1 1192 571 255 14 7 chr9 79611176 79611322 -44464850 + B1_Mur1 SINE Alu 2 148 -1 1 1192 795 241 96 5 chr9 79611526 79611714 -44464458 - MTD LTR MaLR 0 421 217 1 1192 1024 210 119 32 chr9 79611715 79612041 -44464131 - RMER16 LTR ERVK 0 533 1 1 1192 644 246 66 71 chr9 79612044 79612241 -44463931 - MTD LTR MaLR -223 196 1 1 1192 2920 208 102 139 chr9 79612241 79613546 -44462626 - MTD-int LTR MaLR 0 1258 2 1 1192 1258 206 210 20 chr9 79613546 79613897 -44462275 - MTD LTR MaLR 0 419 1 1 1192 226 306 99 25 chr9 79613913 79614074 -44462098 - MIRb SINE MIR -45 223 51 1 1192 313 319 103 7 chr9 79614490 79614635 -44461537 + L1MC3 LINE L1 5848 6006 -1779 1 1192 330 310 108 14 chr9 79615049 79615262 -44460910 + Lx8 LINE L1 6698 6930 -543 1 1192 846 103 63 30 chr9 79615283 79615464 -44460708 + B2_Mm2 SINE B2 1 216 0 1 1192 26 64 0 0 chr9 79615923 79615970 -44460202 + AT_rich Low_complexity Low_complexity 1 47 0 1 1192 28 0 0 0 chr9 79616126 79616154 -44460018 + AT_rich Low_complexity Low_complexity 1 28 0 1 1192 22 35 0 0 chr9 79616590 79616619 -44459553 + AT_rich Low_complexity Low_complexity 1 29 0 1 1192 195 42 0 0 chr9 79619434 79619458 -44456714 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 1 1192 545 158 175 48 chr9 79619476 79619602 -44456570 - B1_Mur2 SINE Alu 0 149 7 1 1192 240 41 60 20 chr9 79619608 79619658 -44456514 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 1 1192 405 0 0 0 chr9 79619907 79619952 -44456220 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1192 315 0 0 0 chr9 79620319 79620354 -44455818 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1192 972 58 0 131 chr9 79620354 79620514 -44455658 - B1_Mus2 SINE Alu 0 147 9 1 1192 495 221 159 38 chr9 79621204 79621336 -44454836 + B1_Mur1 SINE Alu 1 148 -1 1 1192 581 248 12 69 chr9 79621526 79621699 -44454473 + RSINE1 SINE B4 3 165 0 1 1192 23 68 0 0 chr9 79621704 79621748 -44454424 + AT_rich Low_complexity Low_complexity 1 44 0 1 1192 573 268 0 84 chr9 79622395 79622562 -44453610 + RSINE1 SINE B4 3 155 -10 1 1192 433 338 95 4 chr9 79623416 79623680 -44452492 + MER33 DNA MER1_type 35 322 -2 1 1192 254 256 0 0 chr9 79624303 79624346 -44451826 - PB1D10 SINE Alu -74 43 1 1 1192 317 243 25 75 chr9 79625455 79625535 -44450637 + ID4_ SINE ID 5 80 -3 1 1192 564 253 138 43 chr9 79625628 79625859 -44450313 + B4A SINE B4 5 257 -35 1 1192 321 26 0 0 chr9 79625864 79625902 -44450270 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1192 24 53 0 0 chr9 79625912 79625950 -44450222 + AT_rich Low_complexity Low_complexity 1 38 0 1 1192 456 303 25 0 chr9 79626565 79626687 -44449485 + ID_B1 SINE B4 91 215 -9 1 1192 627 159 36 36 chr9 79627047 79627158 -44449014 - B1_Mur4 SINE Alu -3 147 37 1 1192 673 146 122 0 chr9 79627479 79627602 -44448570 - B1_Mur3 SINE Alu 0 149 12 1 1192 25 51 0 0 chr9 79627927 79627966 -44448206 + AT_rich Low_complexity Low_complexity 1 39 0 1 1192 442 31 15 15 chr9 79628807 79628872 -44447300 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1192 468 320 71 91 chr9 79629180 79629531 -44446641 + ORR1E LTR MaLR 1 344 -15 1 1192 362 209 126 7 chr9 79629532 79629667 -44446505 - L1MC1 LINE L1 -122 6211 6061 1 1192 26 50 0 0 chr9 79629667 79629707 -44446465 + AT_rich Low_complexity Low_complexity 1 40 0 1 1192 1054 64 0 66 chr9 79629744 79629895 -44446277 - B1_Mus1 SINE Alu -6 142 2 1 1192 25 51 0 0 chr9 79630704 79630743 -44445429 + AT_rich Low_complexity Low_complexity 1 39 0 1 1192 1525 33 28 0 chr9 79630861 79631043 -44445129 - B2_Mm1a SINE B2 -6 187 1 1 1192 193 262 229 7 chr9 79631136 79631290 -44444882 - MIR3 SINE MIR -57 211 1 1 1192 726 234 122 25 chr9 79631633 79631830 -44444342 + B3 SINE B2 1 216 0 1 1192 190 298 259 10 chr9 79632849 79633042 -44443130 + L2 LINE L2 2840 3080 -339 1 1192 3471 183 70 42 chr9 79633088 79633629 -44442543 + RLTR40 LTR ERVK 1 575 -242 1 1192 405 0 0 0 chr9 79633629 79633674 -44442498 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1192 3471 183 70 42 chr9 79633674 79633914 -44442258 + RLTR40 LTR ERVK 576 804 -13 1 1192 746 238 112 0 chr9 79634030 79634190 -44441982 + B3 SINE B2 2 179 -37 1 1192 1191 263 52 120 chr9 79634237 79634644 -44441528 + MTE2a LTR MaLR 1 379 0 1 1192 580 276 81 67 chr9 79634806 79635016 -44441156 - ID_B1 SINE B4 -11 213 1 1 1192 600 271 139 26 chr9 79635870 79636143 -44440029 - MER58D DNA MER1_type -17 369 66 1 1192 243 0 0 0 chr9 79636163 79636190 -44439982 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1192 779 65 0 27 chr9 79636939 79637049 -44439123 - B1_Mus2 SINE Alu -1 146 40 1 1192 282 182 73 61 chr9 79636981 79637063 -44439109 - RLTR25B LTR ERVK -519 509 427 1 1192 375 250 0 0 chr9 79637070 79637234 -44438938 + CT-rich Low_complexity Low_complexity 2 165 0 1 1192 388 133 0 0 chr9 79637245 79637305 -44438867 - B1_Mus1 SINE Alu -88 60 1 1 1192 461 62 0 15 chr9 79637928 79637994 -44438178 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 2 1192 340 240 174 20 chr9 79637994 79638092 -44438080 - B1_Mur2 SINE Alu -7 142 30 2 1192 867 256 0 6 chr9 79638080 79638261 -44437911 - B3 SINE B2 -36 180 1 2 1192 204 308 207 30 chr9 79638616 79638780 -44437392 - MIR3 SINE MIR -8 200 8 2 1192 256 250 40 80 chr9 79639218 79639318 -44436854 - MIRb SINE MIR -109 159 64 2 1192 21 0 0 0 chr9 79639358 79639379 -44436793 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 25 31 0 0 chr9 79639602 79639634 -44436538 + AT_rich Low_complexity Low_complexity 1 32 0 2 1192 432 130 0 0 chr9 79639687 79639756 -44436416 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1192 202 286 0 0 chr9 79640792 79640862 -44435310 + (ATG)n Simple_repeat Simple_repeat 1 70 0 2 1192 225 234 0 0 chr9 79641096 79641143 -44435029 + (CCG)n Simple_repeat Simple_repeat 1 47 0 2 1192 246 257 13 39 chr9 79641217 79641294 -44434878 + G-rich Low_complexity Low_complexity 1 75 0 2 1192 219 139 0 0 chr9 79641695 79641731 -44434441 + (ATG)n Simple_repeat Simple_repeat 1 36 0 2 1192 345 250 132 8 chr9 79641924 79642045 -44434127 + B1F SINE Alu 8 143 -6 2 1192 345 297 62 9 chr9 79641937 79642049 -44434123 + ID_B1 SINE B4 105 222 -2 2 1192 400 243 56 9 chr9 79642363 79642471 -44433701 - PB1D9 SINE Alu -7 113 1 2 1192 452 301 83 30 chr9 79642847 79643015 -44433157 + MER2 DNA MER2_type 168 344 -1 2 1192 725 207 37 0 chr9 79643157 79643292 -44432880 + B1_Mur4 SINE Alu 3 142 -8 2 1192 186 43 0 0 chr9 79643301 79643324 -44432848 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1192 1185 55 7 0 chr9 79643328 79643473 -44432699 - B1_Mus2 SINE Alu 0 147 2 2 1192 264 59 0 0 chr9 79643580 79643614 -44432558 + (GGAGAA)n Simple_repeat Simple_repeat 4 37 0 2 1192 559 221 62 0 chr9 79643834 79643947 -44432225 - B1_Mus2 SINE Alu -11 136 17 2 1192 303 140 20 0 chr9 79644195 79644245 -44431927 + B1_Mus2 SINE Alu 97 147 0 2 1192 248 289 120 37 chr9 79644271 79644379 -44431793 + PB1D10 SINE Alu 1 117 0 2 1192 191 286 148 28 chr9 79645113 79645221 -44430951 + L2c LINE L2 3227 3347 -40 2 1192 971 205 220 29 chr9 79645577 79645894 -44430278 + ORR1C2 LTR MaLR 1 370 -8 2 1192 292 292 15 0 chr9 79646400 79646465 -44429707 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 2 1192 285 299 14 29 chr9 79646408 79646477 -44429695 + ID4_ SINE ID 16 83 0 2 1192 242 336 39 78 chr9 79646605 79646734 -44429438 + ORR1E LTR MaLR 1 124 -235 2 1192 1490 190 49 60 chr9 79646759 79647106 -44429066 - ORR1D1 LTR MaLR -14 360 18 2 1192 299 197 0 47 chr9 79648087 79648151 -44428021 - RSINE1 SINE B4 -77 88 28 2 1192 381 338 106 59 chr9 79648153 79648633 -44427539 + LTR84a LTR ERVL 235 756 -5 2 1192 626 214 90 2 chr9 79648739 79648885 -44427287 + B3A SINE B2 4 163 -53 2 1192 402 127 0 0 chr9 79648886 79648957 -44427215 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1192 21 0 0 0 chr9 79648984 79649005 -44427167 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 22 35 0 0 chr9 79649220 79649249 -44426923 + AT_rich Low_complexity Low_complexity 1 29 0 2 1192 638 227 31 0 chr9 79650238 79650366 -44425806 + B1F SINE Alu 12 143 -6 2 1192 257 316 7 111 chr9 79650250 79650377 -44425795 - YREP_Mm Unknown Unknown -1519 293 177 2 1192 446 237 43 17 chr9 79650377 79650493 -44425679 + PB1D9 SINE Alu 2 120 0 2 1192 257 316 7 111 chr9 79650493 79650518 -44425654 - YREP_Mm Unknown Unknown -1636 176 157 2 1192 387 0 0 0 chr9 79651101 79651144 -44425028 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1192 21 36 0 0 chr9 79651259 79651287 -44424885 + AT_rich Low_complexity Low_complexity 1 28 0 2 1192 23 33 0 0 chr9 79651705 79651735 -44424437 + AT_rich Low_complexity Low_complexity 1 30 0 2 1192 619 235 22 14 chr9 79651735 79651873 -44424299 + B1_Mur1 SINE Alu 1 139 -10 2 1192 287 104 0 20 chr9 79651895 79651944 -44424228 + (GGA)n Simple_repeat Simple_repeat 1 48 0 2 1192 1263 30 6 18 chr9 79652731 79652901 -44423271 + (GGAA)n Simple_repeat Simple_repeat 4 171 0 2 1192 399 315 93 7 chr9 79653583 79653733 -44422439 - RSINE1 SINE B4 0 165 3 2 1192 207 100 0 0 chr9 79653757 79653787 -44422385 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1192 1157 68 0 0 chr9 79653787 79653933 -44422239 - B1_Mus2 SINE Alu 0 147 2 2 1192 546 218 111 14 chr9 79653980 79654124 -44422048 - RSINE1 SINE B4 -6 159 2 2 1192 416 311 79 85 chr9 79655755 79655920 -44420252 + RSINE1 SINE B4 2 165 0 2 1192 510 268 0 0 chr9 79657821 79657933 -44418239 + B3 SINE B2 5 116 -100 2 1192 855 160 100 6 chr9 79658003 79658173 -44417999 + URR1A DNA MER1_type 35 220 -6 2 1192 616 285 70 33 chr9 79658269 79658483 -44417689 + B4 SINE B4 1 222 -70 2 1192 762 208 109 5 chr9 79658520 79658713 -44417459 + B3 SINE B2 1 213 -3 2 1192 225 0 0 0 chr9 79658964 79658989 -44417183 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1192 336 292 41 10 chr9 79659029 79659126 -44417046 + RSINE1 SINE B4 26 125 -40 2 1192 608 332 97 76 chr9 79659173 79659926 -44416246 + HAL1 LINE L1 1739 2507 0 2 1192 275 279 178 65 chr9 79659930 79660099 -44416073 + B3A SINE B2 1 188 -10 2 1192 638 132 14 0 chr9 79660138 79660282 -44415890 + (TCTCTG)n Simple_repeat Simple_repeat 4 149 0 2 1192 288 291 31 93 chr9 79660838 79660967 -44415205 + MER91C DNA Tip100 17 137 -3 2 1192 912 104 0 0 chr9 79661128 79661262 -44414910 + (GAAA)n Simple_repeat Simple_repeat 4 137 0 2 1192 281 346 19 0 chr9 79664487 79664591 -44411581 - PB1D10 SINE Alu -8 109 4 2 1192 1029 88 34 0 chr9 79664985 79665133 -44411039 + B2_Mm1t SINE B2 2 154 -39 2 1192 341 134 371 19 chr9 79665219 79665324 -44410848 + B2_Mm2 SINE B2 47 188 -7 2 1192 26 0 0 0 chr9 79665378 79665404 -44410768 + AT_rich Low_complexity Low_complexity 1 26 0 2 1192 1154 61 0 26 chr9 79665404 79665555 -44410617 - B1_Mm SINE Alu 0 147 1 2 1192 225 0 0 0 chr9 79668515 79668540 -44407632 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1192 379 95 13 13 chr9 79668595 79668670 -44407502 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 1192 249 290 150 15 chr9 79668740 79668873 -44407299 + L1ME3A LINE L1 5963 6113 -60 2 1192 787 172 7 40 chr9 79669215 79669366 -44406806 + B1_Mus2 SINE Alu 1 146 -1 2 1192 24 0 0 0 chr9 79669564 79669588 -44406584 + AT_rich Low_complexity Low_complexity 1 24 0 2 1192 392 265 66 88 chr9 79669719 79669901 -44406271 - B3A SINE B2 -16 182 5 2 1192 258 32 0 0 chr9 79670288 79670319 -44405853 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1192 189 0 0 0 chr9 79670572 79670593 -44405579 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1192 323 167 15 0 chr9 79670714 79670780 -44405392 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 2 1192 371 297 0 105 chr9 79670806 79670930 -44405242 + RSINE1 SINE B4 30 140 -25 2 1192 250 321 141 56 chr9 79671586 79671820 -44404352 + L2 LINE L2 2526 2779 -640 2 1192 558 140 0 0 chr9 79671857 79671957 -44404215 + (GA)n Simple_repeat Simple_repeat 1 100 0 2 1192 446 283 127 54 chr9 79672186 79672874 -44403298 + L1MC5 LINE L1 7176 7913 -48 2 1192 589 242 24 30 chr9 79674058 79674224 -44401948 - RSINE1 SINE B4 0 165 1 2 1192 1417 215 144 117 chr9 79674720 79675178 -44400994 + MT2A LTR ERVL 2 470 -63 2 1192 354 23 0 0 chr9 79675178 79675221 -44400951 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1192 860 79 8 0 chr9 79675221 79675346 -44400826 + (GA)n Simple_repeat Simple_repeat 2 128 0 2 1192 1417 215 144 117 chr9 79675346 79675401 -44400771 + MT2A LTR ERVL 471 529 -4 2 1192 315 0 0 0 chr9 79675516 79675551 -44400621 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1192 308 221 76 104 chr9 79676382 79676513 -44399659 + RMER17A2 LTR ERVK 223 339 -567 2 1192 1211 86 6 0 chr9 79676513 79676687 -44399485 + (TTC)n Simple_repeat Simple_repeat 3 177 0 2 1192 308 244 68 96 chr9 79676687 79676925 -44399247 + RMER17A2 LTR ERVK 118 501 -405 2 1192 213 273 34 11 chr9 79679048 79679137 -44397035 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 2 1192 415 306 89 27 chr9 79679152 79679377 -44396795 - B4A SINE B4 -4 288 50 2 1192 1153 226 85 56 chr9 79679377 79679789 -44396383 + RMER10A LTR ERVL 1 424 -18 2 1192 621 245 157 0 chr9 79680090 79680131 -44396041 - B3 SINE B2 -4 212 161 2 1192 414 0 0 0 chr9 79680131 79680177 -44395995 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1192 621 245 157 0 chr9 79680177 79680294 -44395878 - B3 SINE B2 -56 160 31 2 1192 483 18 0 0 chr9 79680333 79680389 -44395783 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 2 1192 595 177 8 8 chr9 79680622 79680753 -44395419 + GA-rich Low_complexity Low_complexity 2 132 0 2 1192 213 94 0 0 chr9 79680862 79680894 -44395278 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 2 1192 195 338 28 70 chr9 79681132 79681275 -44394897 + MIRb SINE MIR 125 261 -7 2 1192 6028 58 34 12 chr9 79681487 79682202 -44393970 + L1Md_F2 LINE L1 5768 6481 -101 2 1192 276 30 0 0 chr9 79682202 79682235 -44393937 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 2 1192 6028 58 34 12 chr9 79682235 79682317 -44393855 + L1Md_F2 LINE L1 6482 6581 -1 2 1192 723 24 0 0 chr9 79683141 79683226 -44392946 + (TG)n Simple_repeat Simple_repeat 1 85 0 2 1192 551 302 152 25 chr9 79683228 79683472 -44392700 - B4A SINE B4 -14 278 4 2 1192 246 128 0 0 chr9 79683489 79683528 -44392644 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 2 1192 27 0 0 0 chr9 79683549 79683576 -44392596 + AT_rich Low_complexity Low_complexity 1 27 0 2 1192 375 325 72 10 chr9 79683829 79684037 -44392135 + Tigger7 DNA MER2_type 2271 2491 0 3 1192 19824 58 3 2 chr9 79686187 79689382 -44386790 - L1Md_F2 LINE L1 -1 6581 3388 3 1192 387 113 37 0 chr9 79689510 79689601 -44386571 + RLTR11A LTR ERVK 62 175 -353 3 1192 1002 183 8 94 chr9 79689604 79689870 -44386302 + RLTR11A LTR ERVK 281 523 -5 3 1192 238 270 162 0 chr9 79690283 79690394 -44385778 + B1F1 SINE Alu 14 142 -7 3 1192 378 234 20 41 chr9 79690307 79690405 -44385767 + ID_B1 SINE B4 129 224 0 3 1192 548 240 15 44 chr9 79690415 79690550 -44385622 + ID_B1 SINE B4 86 216 -8 3 1193 1731 188 65 125 chr9 79692178 79692545 -44383627 + L1_Mur1 LINE L1 800 1177 -5805 3 1193 1175 62 14 0 chr9 79692545 79692691 -44383481 + B1_Mus1 SINE Alu 1 148 0 3 1193 8948 169 45 18 chr9 79692691 79694530 -44381642 + L1_Mur1 LINE L1 1178 3036 -876 3 1193 522 256 14 21 chr9 79694628 79694768 -44381404 + B1_Mur2 SINE Alu 10 148 -1 3 1193 188 86 29 0 chr9 79694793 79694828 -44381344 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1193 2950 33 0 0 chr9 79695309 79695641 -44380531 + IAPEY3_LTR LTR ERVK 1 332 0 3 1193 749 264 78 0 chr9 79695658 79695851 -44380321 + B3 SINE B2 3 210 -6 3 1193 210 37 0 0 chr9 79696197 79696224 -44379948 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1193 1177 171 4 22 chr9 79697557 79697784 -44378388 + MTB_Mm LTR MaLR 1 223 -184 3 1193 236 223 7 97 chr9 79697910 79698064 -44378108 + GA-rich Low_complexity Low_complexity 6 145 0 3 1193 476 279 16 0 chr9 79698204 79698326 -44377846 - B3A SINE B2 -74 124 1 3 1193 436 296 0 0 chr9 79698330 79698438 -44377734 - ID_B1 SINE B4 -7 217 110 3 1193 5980 43 4 0 chr9 79698784 79699498 -44376674 + L1_Mus1 LINE L1 5850 6566 -1 3 1193 687 147 0 0 chr9 79699515 79699631 -44376541 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 3 1193 447 244 69 9 chr9 79699685 79699801 -44376371 - ID_B1 SINE B4 0 224 102 3 1193 777 230 56 35 chr9 79700485 79700683 -44375489 + B3 SINE B2 2 203 -13 3 1193 756 142 39 0 chr9 79701155 79701282 -44374890 + L1_Rod LINE L1 3954 4085 -1762 3 1193 359 205 12 0 chr9 79701278 79701361 -44374811 - L1_Rod LINE L1 -1674 4173 4090 3 1193 701 184 81 0 chr9 79701783 79701919 -44374253 + B1_Mus2 SINE Alu 1 147 0 3 1193 428 266 18 9 chr9 79701970 79702080 -44374092 - PB1D10 SINE Alu -6 111 1 3 1193 279 0 0 0 chr9 79702385 79702416 -44373756 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1193 425 19 19 0 chr9 79703594 79703648 -44372524 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1193 625 144 120 0 chr9 79703973 79704098 -44372074 - B1_Mur4 SINE Alu 0 150 11 3 1193 216 0 0 0 chr9 79704115 79704139 -44372033 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1193 533 284 15 0 chr9 79704158 79704292 -44371880 - RSINE1 SINE B4 -22 143 8 3 1193 236 269 24 49 chr9 79705034 79705116 -44371056 - PB1D10 SINE Alu 0 117 38 3 1193 258 303 0 0 chr9 79705357 79705433 -44370739 + ID4 SINE ID 8 83 0 3 1193 558 282 28 84 chr9 79705866 79706044 -44370128 + B3A SINE B2 1 168 -30 3 1193 378 0 0 0 chr9 79706046 79706088 -44370084 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1193 402 21 0 0 chr9 79706293 79706340 -44369832 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 3 1193 309 313 26 17 chr9 79706741 79706858 -44369314 - MIR SINE MIR -19 243 126 3 1193 195 186 0 0 chr9 79707792 79707835 -44368337 + CT-rich Low_complexity Low_complexity 1 43 0 3 1193 462 18 0 0 chr9 79709066 79709121 -44367051 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1193 356 333 29 7 chr9 79709435 79709571 -44366601 + B4A SINE B4 1 139 -153 3 1193 2256 306 69 54 chr9 79711304 79711617 -44364555 - L1MB4 LINE L1 -180 6000 5643 3 1193 812 224 64 15 chr9 79711617 79711821 -44364351 + B3 SINE B2 3 216 0 3 1193 2256 303 73 50 chr9 79711821 79712839 -44363333 - L1MB4 LINE L1 -238 5642 4606 3 1193 600 239 44 25 chr9 79713125 79713284 -44362888 - RSINE1 SINE B4 0 165 4 3 1193 646 218 44 15 chr9 79713303 79713438 -44362734 - B1_Mur1 SINE Alu -9 140 2 3 1193 618 109 0 0 chr9 79714326 79714427 -44361745 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 1193 870 57 194 0 chr9 79714447 79714571 -44361601 - B1_Mus1 SINE Alu 0 148 1 3 1193 534 219 133 0 chr9 79714573 79714701 -44361471 - B1_Mur4 SINE Alu 0 150 6 3 1193 709 221 53 7 chr9 79714858 79715008 -44361164 + B3 SINE B2 9 165 -51 3 1193 261 0 0 0 chr9 79715010 79715039 -44361133 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1193 340 262 154 27 chr9 79715254 79715364 -44360808 + RSINE1 SINE B4 2 125 -40 3 1193 248 148 0 93 chr9 79715367 79715464 -44360708 + C-rich Low_complexity Low_complexity 1 88 0 3 1193 272 139 0 0 chr9 79716956 79716999 -44359173 - L1MA6 LINE L1 -119 6181 6139 3 1193 336 293 56 24 chr9 79717448 79717574 -44358598 + L2c LINE L2 3249 3378 -9 3 1193 796 324 80 3 chr9 79718309 79718671 -44357501 + L1M4 LINE L1 4615 5004 -1142 3 1193 389 287 65 8 chr9 79718813 79718936 -44357236 - B4A SINE B4 -155 137 8 3 1193 321 129 0 41 chr9 79719010 79719083 -44357089 + T-rich Low_complexity Low_complexity 5 74 0 3 1193 375 27 82 0 chr9 79719081 79719154 -44357018 + (TCTCCC)n Simple_repeat Simple_repeat 1 79 0 3 1193 1229 276 33 10 chr9 79719157 79719549 -44356623 + L1MB3 LINE L1 5740 6140 -43 3 1193 640 200 25 0 chr9 79719553 79719673 -44356499 + B1_Mur1 SINE Alu 20 142 -7 3 1193 818 109 8 0 chr9 79719675 79719803 -44356369 + (GAAA)n Simple_repeat Simple_repeat 2 130 0 3 1193 240 184 0 0 chr9 79721438 79721487 -44354685 + G-rich Low_complexity Low_complexity 4 52 0 3 1193 181 254 132 15 chr9 79721580 79721648 -44354524 + MIR SINE MIR 82 157 -105 3 1193 274 173 62 0 chr9 79721905 79721986 -44354186 + (TATAA)n Simple_repeat Simple_repeat 4 89 0 3 1193 785 227 90 10 chr9 79722174 79722374 -44353798 - B3 SINE B2 0 216 1 3 1193 1275 89 0 0 chr9 79722737 79722906 -44353266 - L1Md_F2 LINE L1 -82 6500 6332 3 1193 21 0 0 0 chr9 79722954 79722975 -44353197 + AT_rich Low_complexity Low_complexity 1 21 0 3 1193 426 168 157 10 chr9 79724802 79724904 -44351268 + B1_Mur4 SINE Alu 13 129 -21 3 1193 324 161 196 12 chr9 79725081 79725226 -44350946 + ORR1D1 LTR MaLR 1 275 -99 3 1193 405 179 80 62 chr9 79725269 79725382 -44350790 + B3 SINE B2 2 116 -100 3 1193 437 351 5 36 chr9 79725994 79726189 -44349983 - MIR SINE MIR -56 206 18 3 1193 597 83 0 0 chr9 79726244 79726328 -44349844 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 3 1193 387 0 0 0 chr9 79726416 79726459 -44349713 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1193 521 178 66 33 chr9 79726467 79726589 -44349583 - B3A SINE B2 -72 126 1 3 1193 23 0 0 0 chr9 79726592 79726615 -44349557 + AT_rich Low_complexity Low_complexity 1 23 0 3 1193 1392 85 0 21 chr9 79726680 79726873 -44349299 - B2_Mm2 SINE B2 -6 189 1 3 1193 276 260 36 86 chr9 79728557 79728696 -44347476 + L2 LINE L2 328 459 -2960 3 1193 305 333 112 8 chr9 79729577 79729819 -44346353 + L2 LINE L2 830 1096 -2323 3 1193 2296 159 63 30 chr9 79729828 79730334 -44345838 + RLTR11A2 LTR ERVK 5 527 0 3 1193 237 326 22 0 chr9 79730867 79730956 -44345216 - ORR1E LTR MaLR 0 359 269 3 1193 451 280 201 21 chr9 79731195 79731359 -44344813 - Lx9 LINE L1 -22 7622 7417 3 1193 369 0 0 0 chr9 79731359 79731400 -44344772 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1193 451 280 201 21 chr9 79731400 79731564 -44344608 - Lx9 LINE L1 -228 7416 7235 3 1193 596 240 22 55 chr9 79731579 79731760 -44344412 - Lx9 LINE L1 -492 7152 6978 3 1193 309 324 211 9 chr9 79731796 79732242 -44343930 + L2 LINE L2 1769 2304 -1115 3 1193 243 202 77 48 chr9 79732755 79732859 -44343313 + L1MC LINE L1 5375 5484 -689 3 1193 387 41 0 0 chr9 79733078 79733127 -44343045 + (TAA)n Simple_repeat Simple_repeat 3 51 0 3 1193 563 257 56 41 chr9 79733443 79733638 -44342534 - B3A SINE B2 0 198 1 3 1193 263 326 11 0 chr9 79734186 79734278 -44341894 - ID2 SINE ID -57 95 3 3 1193 379 319 61 81 chr9 79734339 79734748 -44341424 + Lx8 LINE L1 6910 7310 -163 3 1193 239 281 61 30 chr9 79734778 79734877 -44341295 + RMER1C Other Other 1241 1342 0 3 1193 351 0 0 0 chr9 79734909 79734948 -44341224 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1193 247 300 0 28 chr9 79734948 79735010 -44341162 - RSINE1 SINE B4 -94 71 11 3 1193 1161 118 0 0 chr9 79735305 79735483 -44340689 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 1193 3060 249 106 48 chr9 79735774 79736717 -44339455 - RMER1A Other Other -5 1025 28 3 1193 457 155 30 40 chr9 79736711 79736812 -44339360 - RMER1B Other Other -672 394 295 3 1193 700 206 64 40 chr9 79737015 79737217 -44338955 + B3 SINE B2 5 211 -5 3 1193 453 311 7 13 chr9 79737242 79737395 -44338777 - MER3 DNA MER1_type -55 154 3 3 1193 1861 144 111 26 chr9 79737421 79737630 -44338542 + RLTR14 LTR ERV1 1 231 -151 3 1193 369 0 0 0 chr9 79737630 79737671 -44338501 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1193 1861 144 111 26 chr9 79737671 79737811 -44338361 + RLTR14 LTR ERV1 232 378 -4 3 1193 387 0 0 0 chr9 79737963 79738006 -44338166 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1193 221 163 0 0 chr9 79739064 79739107 -44337065 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1193 243 226 16 16 chr9 79739293 79739356 -44336816 + (CATA)n Simple_repeat Simple_repeat 4 66 0 3 1193 207 0 0 0 chr9 79739512 79739535 -44336637 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1193 805 106 0 179 chr9 79740586 79740781 -44335391 - URR1A DNA MER1_type 0 226 67 3 1193 1265 94 33 6 chr9 79743129 79743310 -44332862 + B2_Mm1t SINE B2 3 188 -5 3 1193 1155 233 39 39 chr9 79743751 79744082 -44332090 + RLTR12B LTR ERVK 1 331 -197 4 1193 5534 57 22 9 chr9 79747355 79749706 -44326466 + L1Md_A LINE L1 1 752 -5972 4 1193 39051 19 6 10 chr9 79749734 79756777 -44319395 + L1Md_A LINE L1 1 5586 -297 4 1193 9015 13 0 0 chr9 79756777 79757773 -44318399 + L1Md_A LINE L1 5587 6582 0 4 1193 243 0 0 0 chr9 79757790 79757817 -44318355 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1193 192 77 0 0 chr9 79757822 79757848 -44318324 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1193 290 164 115 0 chr9 79757876 79757933 -44318239 + ORR1D1 LTR MaLR 1 64 -310 4 1193 1191 238 114 65 chr9 79757933 79758361 -44317811 - RMER4A LTR ERVK -1 465 17 4 1193 1321 181 78 0 chr9 79758368 79758661 -44317511 + ORR1D1 LTR MaLR 57 372 -2 4 1193 710 222 94 6 chr9 79759184 79759365 -44316807 + B3 SINE B2 1 197 -19 4 1193 249 324 59 0 chr9 79761492 79761594 -44314578 + B3A SINE B2 3 110 -88 4 1193 188 143 24 0 chr9 79761628 79761670 -44314502 + C-rich Low_complexity Low_complexity 6 48 0 4 1193 723 40 0 0 chr9 79762694 79762793 -44313379 + L1Md_T LINE L1 6484 6582 0 4 1193 228 35 0 0 chr9 79762833 79762862 -44313310 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1193 1302 93 49 0 chr9 79763048 79763231 -44312941 + B2_Mm2 SINE B2 4 195 0 4 1193 793 223 45 15 chr9 79763517 79763717 -44312455 + B3 SINE B2 1 206 -10 4 1193 1212 55 0 0 chr9 79763860 79764006 -44312166 + B1_Mus2 SINE Alu 2 147 0 4 1193 488 267 53 15 chr9 79764192 79764325 -44311847 - RSINE1 SINE B4 -21 144 7 4 1193 562 253 67 0 chr9 79764443 79764593 -44311579 - B4A SINE B4 -3 289 130 4 1193 471 298 0 8 chr9 79764942 79765074 -44311098 - B1F SINE Alu -1 148 18 4 1193 1056 253 23 4 chr9 79765637 79765903 -44310269 - B4A SINE B4 -21 271 1 4 1193 426 121 0 0 chr9 79766055 79766121 -44310051 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 1193 181 57 28 28 chr9 79768240 79768276 -44307896 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 4 1193 213 348 52 26 chr9 79768279 79768394 -44307778 - ID_B1 SINE B4 -26 198 81 4 1193 280 280 48 63 chr9 79768352 79768478 -44307694 + MER45A DNA Tip100 55 178 0 4 1193 340 288 39 23 chr9 79768787 79768915 -44307257 + RSINE1 SINE B4 4 133 -32 4 1193 354 98 0 0 chr9 79769022 79769073 -44307099 + (TTG)n Simple_repeat Simple_repeat 2 52 0 4 1193 21 0 0 0 chr9 79770692 79770713 -44305459 + AT_rich Low_complexity Low_complexity 1 21 0 4 1193 832 134 254 6 chr9 79770886 79771059 -44305113 - B3 SINE B2 0 216 1 4 1193 2105 40 7 65 chr9 79771605 79771898 -44304274 - L1Md_F3 LINE L1 0 6584 6309 4 1193 502 277 33 8 chr9 79772051 79772171 -44304001 + B1F SINE Alu 17 139 -10 4 1193 433 262 8 76 chr9 79772053 79772185 -44303987 + ID_B1 SINE B4 100 222 -2 4 1193 1013 128 7 7 chr9 79772504 79772653 -44303519 + B1_Mur4 SINE Alu 1 149 -1 4 1193 350 103 0 33 chr9 79773058 79773118 -44303054 + B1_Mus2 SINE Alu 2 59 -88 4 1193 243 146 0 0 chr9 79773120 79773161 -44303011 + (CAGAGA)n Simple_repeat Simple_repeat 1 41 0 4 1193 236 168 112 56 chr9 79773246 79773353 -44302819 + RLTR25B LTR ERVK 397 509 -519 4 1193 731 87 0 0 chr9 79773290 79773394 -44302778 + B1_Mus2 SINE Alu 42 145 -2 4 1193 196 53 53 0 chr9 79773395 79773433 -44302739 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1193 563 62 12 0 chr9 79773518 79773598 -44302574 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 4 1193 354 138 0 0 chr9 79773614 79773672 -44302500 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1193 330 217 14 0 chr9 79773675 79773744 -44302428 - MER63D DNA AcHobo -678 383 314 4 1193 771 90 0 0 chr9 79775744 79775866 -44300306 + (CA)n Simple_repeat Simple_repeat 2 123 0 4 1193 3306 250 111 13 chr9 79776460 79777003 -44299169 + Lx8 LINE L1 6206 6789 -684 4 1193 690 53 51 34 chr9 79777003 79777180 -44298992 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 1193 3306 250 111 13 chr9 79777180 79777620 -44298552 + Lx8 LINE L1 6790 7285 -188 4 1193 825 11 0 0 chr9 79777705 79777799 -44298373 + (GGAGA)n Simple_repeat Simple_repeat 1 94 0 4 1193 250 366 0 0 chr9 79778737 79778819 -44297353 + ID4 SINE ID 2 83 0 4 1193 3581 203 30 34 chr9 79779604 79780374 -44295798 + Lx6 LINE L1 5977 6743 -717 4 1193 1900 153 25 71 chr9 79780634 79780997 -44295175 - ORR1C1 LTR MaLR -3 375 26 4 1193 2631 26 0 0 chr9 79780997 79781329 -44294843 - L1Md_A LINE L1 0 6582 6263 4 1193 1915 53 0 4 chr9 79781331 79781575 -44294597 - L1Md_F3 LINE L1 -1 6583 6341 4 1193 1900 153 25 71 chr9 79781575 79781600 -44294572 - ORR1C1 LTR MaLR -353 25 2 4 1193 180 0 0 0 chr9 79783434 79783454 -44292718 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1193 22 70 0 0 chr9 79783692 79783735 -44292437 + AT_rich Low_complexity Low_complexity 1 43 0 4 1193 423 0 0 0 chr9 79784038 79784085 -44292087 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1193 484 283 45 13 chr9 79784700 79784854 -44291318 + RSINE1 SINE B4 1 159 -6 4 1193 501 214 58 0 chr9 79785295 79785398 -44290774 + B1_Mur3 SINE Alu 5 113 -36 4 1193 2182 146 11 16 chr9 79787081 79787450 -44288722 + ORR1B2 LTR MaLR 1 367 0 4 1193 1056 200 43 61 chr9 79787808 79788085 -44288087 + MTE2a LTR MaLR 96 367 -12 4 1193 418 256 33 0 chr9 79788132 79788222 -44287950 + B3 SINE B2 1 93 -123 4 1193 225 65 0 0 chr9 79788253 79788284 -44287888 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1193 180 111 0 0 chr9 79788395 79788422 -44287750 + (CCCCCT)n Simple_repeat Simple_repeat 6 32 0 4 1193 381 22 0 0 chr9 79788423 79788469 -44287703 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1193 257 311 77 11 chr9 79789189 79789280 -44286892 - PB1D10 SINE Alu -2 115 19 4 1193 236 248 75 19 chr9 79789973 79790080 -44286092 - ID_B1 SINE B4 -26 198 86 4 1193 388 264 0 6 chr9 79790104 79790211 -44285961 - PB1D7 SINE Alu 0 149 26 4 1193 783 178 173 0 chr9 79790440 79790665 -44285507 + Lx9 LINE L1 7380 7643 -1 4 1193 229 257 40 26 chr9 79790837 79790913 -44285259 + B3A SINE B2 86 162 -36 4 1193 306 0 0 0 chr9 79790922 79790956 -44285216 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1193 186 133 0 0 chr9 79791112 79791142 -44285030 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1193 237 159 0 0 chr9 79791142 79791186 -44284986 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1193 250 293 0 0 chr9 79791276 79791334 -44284838 - ID4_ SINE ID -9 74 17 4 1193 217 188 20 20 chr9 79793768 79793817 -44282355 + CT-rich Low_complexity Low_complexity 4 52 0 4 1193 219 111 0 43 chr9 79794564 79794611 -44281561 + (TTTAA)n Simple_repeat Simple_repeat 4 48 0 4 1193 1482 56 15 0 chr9 79794622 79794818 -44281354 - L1Md_F2 LINE L1 -1 6581 6383 4 1193 241 157 39 19 chr9 79794818 79794870 -44281302 + L1Md_F LINE L1 180 232 -6287 4 1193 613 227 30 8 chr9 79794920 79795053 -44281119 + B1F2 SINE Alu 3 138 -11 4 1193 300 111 0 0 chr9 79795054 79795099 -44281073 + (GGA)n Simple_repeat Simple_repeat 3 47 0 4 1193 272 238 0 12 chr9 79795575 79795592 -44280580 + A-rich Low_complexity Low_complexity 5 21 0 4 1193 646 236 34 20 chr9 79795592 79795739 -44280433 + B1_Mur1 SINE Alu 1 149 0 4 1193 272 238 0 12 chr9 79795739 79795802 -44280370 + A-rich Low_complexity Low_complexity 22 83 0 4 1193 748 332 74 45 chr9 79796123 79796261 -44279911 + L1_Rod LINE L1 5129 5260 -587 4 1193 342 0 0 0 chr9 79796261 79796299 -44279873 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1193 748 332 74 45 chr9 79796299 79796314 -44279858 + L1_Rod LINE L1 5261 5273 -574 4 1193 959 206 74 20 chr9 79796314 79796517 -44279655 + B3 SINE B2 2 215 -1 4 1193 998 312 62 16 chr9 79796517 79797025 -44279147 + L1_Rod LINE L1 5274 5810 -37 4 1193 33 0 0 0 chr9 79797025 79797058 -44279114 + AT_rich Low_complexity Low_complexity 1 33 0 4 1193 261 0 0 0 chr9 79797088 79797117 -44279055 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1193 250 325 71 33 chr9 79798430 79798640 -44277532 + L2 LINE L2 2384 2601 -818 4 1193 482 241 80 0 chr9 79798906 79799018 -44277154 - B1F SINE Alu -8 141 21 4 1193 318 282 94 24 chr9 79799018 79799033 -44277139 - ID_B1 SINE B4 -8 216 81 4 1193 1310 150 112 45 chr9 79799173 79799459 -44276713 - MTC LTR MaLR 0 421 117 4 1193 350 192 38 13 chr9 79799532 79799611 -44276561 + RSINE1 SINE B4 44 124 -41 4 1193 1013 247 19 29 chr9 79799859 79800168 -44276004 + ORR1E LTR MaLR 15 320 -39 4 1193 854 273 9 5 chr9 79800730 79800951 -44275221 - ID_B1 SINE B4 -2 222 1 4 1193 423 0 0 0 chr9 79800985 79801032 -44275140 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1193 373 250 0 0 chr9 79801284 79801368 -44274804 - MTEb LTR MaLR -3 376 293 4 1193 1257 106 11 11 chr9 79801383 79801564 -44274608 + B2_Mm1t SINE B2 1 181 -12 4 1193 325 125 13 34 chr9 79801627 79801694 -44274478 + B2_Mm2 SINE B2 46 116 -82 4 1193 216 0 0 0 chr9 79801709 79801733 -44274439 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4 1193 336 239 169 15 chr9 79801818 79801834 -44274338 - MLT2B2 LTR ERVL -358 157 1 4 1193 498 171 42 75 chr9 79801834 79801954 -44274218 - MTC LTR MaLR -263 116 1 4 1193 1095 20 0 69 chr9 79803202 79803361 -44272811 + L1Md_F2 LINE L1 6434 6581 -1 4 1193 273 98 0 0 chr9 79804284 79804325 -44271847 + (TATAA)n Simple_repeat Simple_repeat 4 44 0 4 1193 317 352 42 14 chr9 79804446 79804659 -44271513 + MER20 DNA MER1_type 1 219 0 4 1193 353 246 178 5 chr9 79804882 79805035 -44271137 + L1MC4 LINE L1 7514 7739 -256 4 1193 324 121 66 49 chr9 79805309 79805370 -44270802 + RSINE1 SINE B4 64 125 -40 4 1193 482 79 0 13 chr9 79805370 79805447 -44270725 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1193 270 81 0 0 chr9 79805464 79805501 -44270671 + (TGG)n Simple_repeat Simple_repeat 1 37 0 4 1193 1077 321 115 23 chr9 79805798 79806892 -44269280 + L1MA5A LINE L1 4774 6005 -166 5 1193 889 183 22 27 chr9 79807136 79807321 -44268851 + B2_Mm2 SINE B2 1 184 -11 5 1193 228 170 19 0 chr9 79807360 79807413 -44268759 + (TAG)n Simple_repeat Simple_repeat 2 55 0 5 1193 520 301 33 0 chr9 79808076 79808259 -44267913 + B3 SINE B2 5 193 -23 5 1193 27 0 0 0 chr9 79808259 79808286 -44267886 + AT_rich Low_complexity Low_complexity 1 27 0 5 1193 407 282 99 22 chr9 79808781 79808962 -44267210 - Tigger7 DNA MER2_type -43 2448 2255 5 1193 607 276 101 16 chr9 79809022 79809280 -44266892 - Tigger7 DNA MER2_type -2146 345 66 5 1193 393 22 0 0 chr9 79809597 79809643 -44266529 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1193 1104 77 0 0 chr9 79810218 79810374 -44265798 + (TG)n Simple_repeat Simple_repeat 1 156 0 5 1193 304 348 97 9 chr9 79810418 79810644 -44265528 - L1M5 LINE L1 -517 5607 5362 5 1193 351 229 68 76 chr9 79810774 79810906 -44265266 - B1F SINE Alu 0 149 19 5 1193 401 296 37 0 chr9 79810797 79810932 -44265240 - ID_B1 SINE B4 -13 211 72 5 1193 540 242 63 32 chr9 79811045 79811203 -44264969 - RSINE1 SINE B4 -1 164 2 5 1193 183 42 0 0 chr9 79811507 79811531 -44264641 + (TTTC)n Simple_repeat Simple_repeat 4 27 0 5 1193 252 288 0 59 chr9 79811618 79811703 -44264469 - B3A SINE B2 0 198 119 5 1193 660 282 90 61 chr9 79812411 79812721 -44263451 + ORR1E LTR MaLR 22 340 -19 5 1193 213 65 0 0 chr9 79814070 79814101 -44262071 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1193 182 208 101 89 chr9 79815124 79815203 -44260969 + MIR SINE MIR 6 85 -177 5 1193 614 302 88 41 chr9 79815784 79816102 -44260070 + ORR1E LTR MaLR 15 347 -12 5 1193 797 212 27 31 chr9 79817023 79817239 -44258933 + B3A SINE B2 6 216 0 5 1193 490 252 9 9 chr9 79817462 79817578 -44258594 + PB1D10 SINE Alu 1 116 -1 5 1193 219 301 82 0 chr9 79817988 79818084 -44258088 + MIRc SINE MIR 34 153 -115 5 1193 220 328 0 0 chr9 79818085 79818149 -44258023 + ID4 SINE ID 20 83 0 5 1193 185 272 123 0 chr9 79820949 79821030 -44255142 - MIR SINE MIR -63 199 109 5 1193 436 271 119 6 chr9 79821438 79821598 -44254574 + B3A SINE B2 3 180 -18 5 1193 612 236 29 41 chr9 79821658 79821830 -44254342 + B3A SINE B2 29 198 0 5 1194 621 141 369 6 chr9 79823869 79824026 -44252146 - B3 SINE B2 0 216 3 5 1194 541 224 25 95 chr9 79824088 79824246 -44251926 - B1F SINE Alu 0 149 3 5 1194 22 0 0 0 chr9 79825103 79825125 -44251047 + AT_rich Low_complexity Low_complexity 1 22 0 5 1194 269 224 0 17 chr9 79826701 79826760 -44249412 + RSINE1 SINE B4 108 165 0 5 1194 180 0 0 0 chr9 79827000 79827020 -44249152 + (TTG)n Simple_repeat Simple_repeat 3 22 0 5 1194 576 153 78 110 chr9 79827274 79827428 -44248744 - B1_Mur2 SINE Alu 0 149 1 5 1194 405 0 0 0 chr9 79827512 79827557 -44248615 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1194 315 0 0 0 chr9 79828514 79828549 -44247623 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1194 399 236 118 0 chr9 79828692 79828802 -44247370 + ID_B1 SINE B4 94 216 -8 5 1194 500 263 164 83 chr9 79828952 79829057 -44247115 + MTD LTR MaLR 4 108 -271 5 1194 1223 48 0 0 chr9 79829057 79829203 -44246969 + B1_Mm SINE Alu 1 146 -1 5 1194 801 204 101 20 chr9 79829203 79829445 -44246727 + MTD LTR MaLR 109 419 0 5 1194 1355 228 15 90 chr9 79829484 79830015 -44246157 - RLTR31_Mur LTR ERVK -60 493 3 5 1194 477 236 19 108 chr9 79830496 79830653 -44245519 + B1_Mur2 SINE Alu 1 143 -6 5 1194 534 279 20 20 chr9 79830662 79830812 -44245360 + RSINE1 SINE B4 4 153 -12 5 1194 560 240 72 29 chr9 79830856 79831055 -44245117 + B3A SINE B2 9 216 0 5 1194 395 374 25 21 chr9 79831106 79831349 -44244823 - MIR SINE MIR -6 256 13 5 1194 1244 34 7 0 chr9 79831866 79832012 -44244160 + B1_Mus2 SINE Alu 1 147 0 5 1194 201 158 0 0 chr9 79832013 79832051 -44244121 + A-rich Low_complexity Low_complexity 1 38 0 5 1194 243 0 0 0 chr9 79832209 79832236 -44243936 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1194 940 178 113 0 chr9 79832307 79832492 -44243680 + B3 SINE B2 1 206 -10 5 1194 430 233 11 0 chr9 79832521 79832611 -44243561 + RSINE1 SINE B4 7 97 -68 5 1194 820 223 35 30 chr9 79832726 79832925 -44243247 + B3 SINE B2 4 203 -13 5 1194 217 325 157 0 chr9 79833173 79833256 -44242916 - B1F1 SINE Alu -48 101 6 5 1194 2153 133 103 42 chr9 79833288 79833774 -44242398 - RMER4B LTR ERVK 0 585 35 5 1194 672 13 0 0 chr9 79833774 79833851 -44242321 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 1194 333 0 0 0 chr9 79833851 79833887 -44242285 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1194 2153 123 83 48 chr9 79833887 79833914 -44242258 - RMER4B LTR ERVK -551 34 9 5 1194 193 344 53 21 chr9 79834106 79834201 -44241971 + MIRb SINE MIR 35 132 -136 5 1194 344 241 59 52 chr9 79834280 79834433 -44241739 + L1ME3A LINE L1 5790 5943 -230 5 1194 281 262 55 55 chr9 79834889 79834998 -44241174 + PB1D10 SINE Alu 1 109 -8 5 1194 2456 117 0 3 chr9 79835538 79835882 -44240290 - ORR1A1 LTR MaLR -3 343 1 5 1194 297 0 0 0 chr9 79836266 79836299 -44239873 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1194 618 224 0 0 chr9 79836301 79836426 -44239746 + ID_B1 SINE B4 93 217 -7 5 1194 452 303 15 8 chr9 79836439 79836572 -44239600 + RSINE1 SINE B4 3 136 -29 5 1194 257 299 65 0 chr9 79837003 79837110 -44239062 + PB1D10 SINE Alu 2 115 -2 5 1194 189 0 0 0 chr9 79837379 79837400 -44238772 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1194 278 297 88 10 chr9 79838628 79838730 -44237442 + MER20 DNA MER1_type 1 110 -109 5 1194 525 251 1 12 chr9 79838994 79839942 -44236230 + (CA)n Simple_repeat Simple_repeat 1 937 0 5 1194 229 281 117 84 chr9 79840508 79840687 -44235485 + LTR16D LTR ERVL 459 643 -8 5 1194 216 220 0 39 chr9 79842148 79842200 -44233972 - ID_B1 SINE B4 -103 121 72 5 1194 483 292 88 0 chr9 79842256 79842403 -44233769 - B3A SINE B2 -25 173 14 5 1194 364 169 13 25 chr9 79843396 79843475 -44232697 + ID_B1 SINE B4 146 223 -1 5 1194 788 80 9 0 chr9 79844171 79844284 -44231888 + (TAGA)n Simple_repeat Simple_repeat 2 115 0 5 1194 1102 275 79 15 chr9 79844320 79844711 -44231461 - MLT2B2 LTR ERVL -66 449 34 5 1194 828 124 0 0 chr9 79845642 79845779 -44230393 + (TCC)n Simple_repeat Simple_repeat 3 139 0 5 1194 759 50 0 0 chr9 79845781 79845882 -44230290 - B1_Mus2 SINE Alu 0 147 47 5 1194 242 188 0 115 chr9 79845816 79845894 -44230278 - MT2B2 LTR ERVL -320 264 196 5 1194 240 59 0 0 chr9 79846423 79846457 -44229715 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1194 532 240 33 127 chr9 79846506 79846890 -44229282 + ORR1E LTR MaLR 40 367 -12 5 1194 845 246 26 0 chr9 79847833 79848028 -44228144 + B3 SINE B2 7 206 -10 5 1194 1310 13 0 0 chr9 79848114 79848267 -44227905 - L1Md_A LINE L1 0 6582 6430 5 1194 22 0 0 0 chr9 79849313 79849335 -44226837 + AT_rich Low_complexity Low_complexity 1 22 0 5 1194 334 308 50 8 chr9 79849473 79849594 -44226578 + RSINE1 SINE B4 3 128 -37 5 1194 279 0 0 0 chr9 79849743 79849774 -44226398 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1194 275 269 91 18 chr9 79849784 79849894 -44226278 - PB1D9 SINE Alu -2 118 1 5 1194 202 162 0 26 chr9 79849960 79849998 -44226174 + T-rich Low_complexity Low_complexity 4 40 0 5 1194 257 337 86 38 chr9 79850000 79850105 -44226067 - PB1D10 SINE Alu -6 111 2 5 1194 510 269 15 0 chr9 79850194 79850324 -44225848 - B1F2 SINE Alu -17 132 1 5 1194 26 0 0 0 chr9 79850974 79851000 -44225172 + AT_rich Low_complexity Low_complexity 1 26 0 5 1194 572 111 0 11 chr9 79851003 79851094 -44225078 + B3 SINE B2 1 90 -126 5 1194 29 60 0 0 chr9 79851123 79851173 -44224999 + AT_rich Low_complexity Low_complexity 1 50 0 5 1194 740 278 43 5 chr9 79851185 79851395 -44224777 + ID_B1 SINE B4 6 223 -1 5 1194 360 119 0 0 chr9 79853390 79853449 -44222723 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1194 228 261 43 14 chr9 79853499 79853569 -44222603 - L1M1 LINE L1 -383 5917 5846 5 1194 750 271 129 72 chr9 79853668 79854123 -44222049 - L1_Mur3 LINE L1 -94 5753 5222 5 1194 955 127 101 34 chr9 79854123 79854302 -44221870 - B2_Mm2 SINE B2 -3 192 2 5 1194 750 242 139 94 chr9 79854302 79854413 -44221759 - L1_Mur3 LINE L1 -858 5285 5142 5 1194 425 116 14 0 chr9 79854414 79854483 -44221689 - B2_Mm1t SINE B2 -122 71 2 5 1194 2112 116 35 57 chr9 79854484 79854887 -44221285 + RLTR31_Mm LTR ERVK 168 561 0 5 1194 231 214 82 12 chr9 79854947 79855032 -44221140 - L1_Mur3 LINE L1 -1970 3877 3787 5 1194 238 246 70 0 chr9 79855040 79855097 -44221075 - MusHAL1 LINE L1 -357 2355 2295 5 1194 372 147 0 0 chr9 79855233 79855308 -44220864 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 1194 838 198 6 0 chr9 79855535 79855692 -44220480 - B3A SINE B2 -38 160 3 5 1194 311 230 55 75 chr9 79855884 79856000 -44220172 + L1M2 LINE L1 3623 3740 -2403 5 1194 1299 191 128 67 chr9 79856000 79856405 -44219767 - RLTR23 LTR ERV1 0 430 1 5 1194 311 230 55 75 chr9 79856405 79856434 -44219738 + L1M2 LINE L1 3741 3765 -2378 5 1194 843 224 112 33 chr9 79856874 79857295 -44218877 + Lx9 LINE L1 7008 7493 -151 5 1194 26 0 0 0 chr9 79857397 79857423 -44218749 + AT_rich Low_complexity Low_complexity 1 26 0 5 1194 200 35 35 0 chr9 79857498 79857527 -44218645 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1194 229 226 0 36 chr9 79857551 79857606 -44218566 + B4 SINE B4 34 86 -206 6 1194 800 249 24 9 chr9 79857766 79857977 -44218195 + B3 SINE B2 3 216 0 6 1194 8082 68 7 6 chr9 79858176 79859189 -44216983 + L1_Mus4 LINE L1 5605 6623 -13 6 1194 1407 83 15 15 chr9 79859189 79859384 -44216788 + B2_Mm2 SINE B2 1 195 0 6 1194 8082 68 7 6 chr9 79859384 79859399 -44216773 + L1_Mus4 LINE L1 6624 6634 -2 6 1194 460 269 9 0 chr9 79859469 79859577 -44216595 + B1F2 SINE Alu 1 109 -40 6 1194 259 287 106 8 chr9 79859720 79859843 -44216329 - B1_Mus2 SINE Alu -12 135 1 6 1194 336 239 174 0 chr9 79861080 79861172 -44215000 - PB1D7 SINE Alu -7 113 6 6 1194 529 99 19 47 chr9 79861248 79861260 -44214912 - ORR1B1 LTR MaLR -245 149 141 6 1194 2262 117 6 9 chr9 79861260 79861588 -44214584 - ORR1A2 LTR MaLR 0 327 1 6 1194 10361 124 109 10 chr9 79861588 79863375 -44212797 - ORR1A2-int LTR MaLR 0 1963 1 6 1194 596 124 0 0 chr9 79863375 79863480 -44212692 - ORR1A2 LTR MaLR -239 107 3 6 1194 1086 224 139 19 chr9 79863597 79863920 -44212252 + ORR1D2 LTR MaLR 1 362 -8 6 1194 210 184 26 0 chr9 79864061 79864099 -44212073 + ID4 SINE ID 6 44 -39 6 1194 3152 89 2 31 chr9 79864106 79864591 -44211581 - RMER16 LTR ERVK 0 533 63 6 1194 638 238 24 77 chr9 79865108 79865317 -44210855 + B3A SINE B2 1 198 0 6 1194 262 316 127 20 chr9 79865704 79865901 -44210271 + L1MEf LINE L1 314 531 -5563 6 1194 185 0 40 0 chr9 79865932 79865957 -44210215 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1194 350 319 21 14 chr9 79865967 79866110 -44210062 + L1MEf LINE L1 599 742 -5458 6 1194 207 0 0 0 chr9 79866110 79866133 -44210039 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1194 396 0 0 0 chr9 79866150 79866194 -44209978 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 6 1194 297 241 17 0 chr9 79866204 79866262 -44209910 - ID2 SINE ID -16 67 9 6 1194 384 324 65 14 chr9 79866383 79866521 -44209651 - B1F SINE Alu -4 145 1 6 1194 1246 132 11 0 chr9 79866950 79867140 -44209032 + B2_Mm1t SINE B2 2 193 0 6 1194 519 242 152 47 chr9 79867236 79867427 -44208745 + B3 SINE B2 2 212 -4 6 1194 444 264 57 0 chr9 79867534 79867545 -44208627 + B1F SINE Alu 1 144 -1 6 1194 533 228 32 16 chr9 79867545 79867670 -44208502 + ID_B1 SINE B4 93 219 -5 6 1194 255 379 71 0 chr9 79868189 79868329 -44207843 - MLT1K LTR MaLR -304 291 142 6 1194 614 283 6 6 chr9 79868807 79868967 -44207205 + B3A SINE B2 1 160 -38 6 1194 486 243 0 0 chr9 79869034 79869145 -44207027 + PB1D9 SINE Alu 10 120 0 6 1194 1096 95 0 13 chr9 79869807 79869956 -44206216 - B1_Mm SINE Alu 0 147 1 6 1194 519 267 32 75 chr9 79870173 79870359 -44205813 - B4A SINE B4 -113 179 2 6 1194 385 184 140 37 chr9 79870651 79870758 -44205414 + ID_B1 SINE B4 81 198 -26 6 1194 236 180 0 176 chr9 79871025 79871099 -44205073 - ID4_ SINE ID 0 83 23 6 1194 468 244 51 15 chr9 79871606 79871743 -44204429 - B1_Mur1 SINE Alu -3 146 5 6 1194 403 325 17 17 chr9 79871808 79871924 -44204248 - RSINE1 SINE B4 -16 149 34 6 1194 233 77 18 88 chr9 79871929 79871986 -44204186 + T-rich Low_complexity Low_complexity 3 55 0 6 1194 252 0 0 0 chr9 79872007 79872035 -44204137 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1194 481 146 8 8 chr9 79872035 79872159 -44204013 + (TA)n Simple_repeat Simple_repeat 2 125 0 6 1194 37 0 0 0 chr9 79872166 79872203 -44203969 + AT_rich Low_complexity Low_complexity 1 37 0 6 1194 415 292 92 0 chr9 79872333 79872463 -44203709 + ID_B1 SINE B4 82 223 -1 6 1194 301 232 82 21 chr9 79873018 79873115 -44203057 + MTE2b LTR MaLR 1 103 -276 6 1194 1490 59 16 0 chr9 79873373 79873559 -44202613 + B2_Mm2 SINE B2 1 189 -6 6 1194 522 260 38 8 chr9 79874258 79874390 -44201782 - ID_B1 SINE B4 -8 216 81 6 1194 231 308 84 0 chr9 79874873 79874980 -44201192 + PB1D9 SINE Alu 1 116 -4 6 1194 1715 151 130 166 chr9 79875063 79875546 -44200626 - RMER4B LTR ERVK 0 466 1 6 1194 1172 239 91 16 chr9 79875548 79875867 -44200305 - MTD LTR MaLR -45 374 32 6 1194 22 0 0 0 chr9 79875901 79875923 -44200249 + AT_rich Low_complexity Low_complexity 1 22 0 6 1194 3243 56 5 2 chr9 79875936 79876331 -44199841 + MTA_Mm LTR MaLR 1 396 0 6 1194 1251 41 0 0 chr9 79876431 79876578 -44199594 + B1_Mus2 SINE Alu 1 147 0 6 1194 2937 107 33 41 chr9 79876699 79877185 -44198987 - RLTR45 LTR ERVK 0 482 1 6 1194 3837 75 36 0 chr9 79877241 79877799 -44198373 + MT2B2 LTR ERVL 7 584 0 6 1194 218 32 32 0 chr9 79877802 79877833 -44198339 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1194 408 302 24 8 chr9 79877966 79878093 -44198079 + ID_B1 SINE B4 59 187 -37 6 1194 301 297 89 9 chr9 79877998 79878110 -44198062 + B1F SINE Alu 12 132 -17 6 1194 1197 136 6 0 chr9 79878156 79878332 -44197840 + B2_Mm1t SINE B2 3 179 -14 6 1194 293 161 9 34 chr9 79878379 79878447 -44197725 + B2_Mm2 SINE B2 47 116 -100 6 1194 3845 73 14 23 chr9 79878680 79879197 -44196975 - RLTR1B LTR ERV1 0 512 1 6 1194 845 262 19 0 chr9 79879230 79879440 -44196732 - B3 SINE B2 0 216 3 6 1194 21 57 0 0 chr9 79879458 79879493 -44196679 + AT_rich Low_complexity Low_complexity 1 35 0 6 1194 222 37 0 0 chr9 79879584 79879611 -44196561 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 6 1194 416 238 128 24 chr9 79879755 79879844 -44196328 - B1_Mur1 SINE Alu -5 144 55 6 1194 546 16 0 0 chr9 79879844 79879907 -44196265 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 1194 416 238 128 24 chr9 79879907 79879942 -44196230 - B1_Mur1 SINE Alu -95 54 9 6 1194 2438 56 12 36 chr9 79880555 79880890 -44195282 - IAPLTR2b LTR ERVK 0 327 1 6 1194 6410 66 12 17 chr9 79880892 79881725 -44194447 - IAPEz-int LTR ERVK -2 6479 5651 6 1194 2734 70 0 3 chr9 79881718 79882063 -44194109 - IAPEz-int LTR ERVK -4781 1700 1357 6 1194 3616 102 42 81 chr9 79882063 79882896 -44193276 - IAPEz-int LTR ERVK -5821 660 9 6 1194 2427 59 12 36 chr9 79882897 79883232 -44192940 - IAPLTR2b LTR ERVK 0 327 1 6 1194 396 0 0 0 chr9 79883926 79883970 -44192202 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1194 302 238 163 96 chr9 79883993 79884128 -44192044 + B2_Mm2 SINE B2 2 145 -50 6 1194 477 0 0 0 chr9 79884138 79884191 -44191981 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1194 207 69 0 0 chr9 79884196 79884225 -44191947 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1194 2184 109 83 23 chr9 79884757 79885143 -44191029 + RLTR9E LTR ERVK 1 409 0 6 1194 424 246 33 10 chr9 79885235 79885440 -44190732 + 7SK RNA RNA 1 237 -94 6 1194 880 253 70 68 chr9 79885476 79885845 -44190327 + ORR1D2 LTR MaLR 1 370 0 6 1194 726 225 16 55 chr9 79885854 79886037 -44190135 - ORR1D1 LTR MaLR 0 384 209 6 1194 462 79 0 0 chr9 79886039 79886102 -44190070 + (TCCCC)n Simple_repeat Simple_repeat 4 66 0 6 1194 303 28 0 0 chr9 79886096 79886132 -44190040 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1194 1292 98 17 0 chr9 79886132 79886306 -44189866 - B2_Mm2 SINE B2 -16 179 3 6 1194 627 92 9 18 chr9 79886335 79886446 -44189726 + (GGAGA)n Simple_repeat Simple_repeat 2 111 0 6 1194 750 183 52 98 chr9 79886455 79886649 -44189523 - ORR1D1 LTR MaLR -199 185 1 6 1194 202 288 15 0 chr9 79886706 79886772 -44189400 + GA-rich Low_complexity Low_complexity 1 67 0 6 1194 380 193 0 67 chr9 79888093 79888182 -44187990 + B3 SINE B2 1 83 -133 6 1194 801 152 0 7 chr9 79888186 79888325 -44187847 + ORR1C2 LTR MaLR 247 384 0 6 1194 419 214 194 0 chr9 79888328 79888426 -44187746 + ID_B1 SINE B4 76 192 -32 6 1194 231 114 0 0 chr9 79888435 79888470 -44187702 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 6 1194 422 277 11 0 chr9 79888486 79888580 -44187592 + B4 SINE B4 2 96 -196 6 1194 374 91 0 0 chr9 79888580 79888635 -44187537 + MusHAL1 LINE L1 1355 1409 -1303 6 1194 5427 51 6 3 chr9 79888635 79889264 -44186908 + L1_Mus2 LINE L1 5927 6557 -9 6 1194 2642 78 3 0 chr9 79889952 79890299 -44185873 + MTA_Mm LTR MaLR 1 348 -48 6 1194 24 53 0 0 chr9 79890300 79890338 -44185834 + AT_rich Low_complexity Low_complexity 1 38 0 6 1194 394 303 22 0 chr9 79890461 79890550 -44185622 + B4 SINE B4 81 171 -121 6 1194 450 0 0 0 chr9 79890606 79890656 -44185516 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1194 939 232 53 119 chr9 79890656 79890898 -44185274 + MTC LTR MaLR 1 239 -182 6 1194 558 0 0 0 chr9 79890898 79890960 -44185212 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1194 939 232 53 119 chr9 79890960 79891054 -44185118 + MTC LTR MaLR 240 315 -106 6 1194 4851 52 24 25 chr9 79891095 79891683 -44184489 + LTRIS_Mus LTR ERV1 1 587 0 6 1194 821 200 6 41 chr9 79892036 79892121 -44184051 + MTC LTR MaLR 242 326 -95 6 1194 2961 102 17 15 chr9 79892121 79892529 -44183643 + RLTR9E LTR ERVK 1 409 0 6 1194 821 200 6 41 chr9 79892529 79892615 -44183557 + MTC LTR MaLR 327 407 -14 6 1194 1330 188 75 31 chr9 79892746 79893112 -44183060 + MT2B LTR ERVL 88 601 0 6 1194 2231 132 60 11 chr9 79893147 79893515 -44182657 - ORR1B1 LTR MaLR -8 386 1 6 1194 1122 63 0 0 chr9 79893833 79893975 -44182197 - B1_Mus2 SINE Alu 0 147 6 6 1194 1217 169 43 0 chr9 79894201 79894408 -44181764 + B3 SINE B2 1 216 0 6 1194 508 211 21 0 chr9 79894458 79894553 -44181619 + PB1D9 SINE Alu 19 115 -5 6 1194 231 259 19 0 chr9 79894593 79894647 -44181525 + ID2 SINE ID 3 57 -26 6 1194 1894 129 137 28 chr9 79894647 79894959 -44181213 + RMER10B LTR ERVL 1 335 -63 6 1194 792 96 0 0 chr9 79894959 79895074 -44181098 + (CATCT)n Simple_repeat Simple_repeat 1 115 0 6 1194 1894 129 137 28 chr9 79895074 79895120 -44181052 + RMER10B LTR ERVL 336 397 -1 6 1194 1418 71 16 21 chr9 79895149 79895336 -44180836 + B2_Mm2 SINE B2 3 188 -7 6 1194 444 301 88 101 chr9 79895387 79895683 -44180489 + B4 SINE B4 1 292 0 6 1194 2063 102 59 7 chr9 79895715 79896021 -44180151 - RLTRETN_Mm LTR ERVK 0 322 1 6 1194 8656 114 10 32 chr9 79896021 79897411 -44178761 - MMETn-int LTR ERVK 0 4844 3486 6 1194 23606 59 13 34 chr9 79897445 79900652 -44175520 - MMETn-int LTR ERVK -1703 3141 2 6 1194 2110 99 59 7 chr9 79900653 79900959 -44175213 - RLTRETN_Mm LTR ERVK 0 322 1 6 1194 370 270 81 0 chr9 79900977 79901088 -44175084 + PB1D7 SINE Alu 1 120 0 6 1194 672 226 24 0 chr9 79901093 79901217 -44174955 + RSINE1 SINE B4 5 131 -34 7 1194 26 0 0 0 chr9 79901230 79901256 -44174916 + AT_rich Low_complexity Low_complexity 1 26 0 7 1194 495 192 48 39 chr9 79901305 79901408 -44174764 + B3 SINE B2 1 104 -112 7 1194 419 288 14 19 chr9 79901583 79901720 -44174452 + B1F SINE Alu 13 139 -10 7 1194 335 271 52 0 chr9 79901739 79901835 -44174337 + PB1D10 SINE Alu 17 117 0 7 1194 306 262 0 15 chr9 79901844 79901910 -44174262 + B4 SINE B4 3 67 -225 7 1194 1043 196 186 18 chr9 79901912 79902098 -44174074 - ORR1C2 LTR MaLR -3 381 172 7 1194 186 43 0 0 chr9 79902098 79902121 -44174051 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 7 1194 288 53 0 0 chr9 79902121 79902158 -44174014 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 7 1194 1043 196 192 22 chr9 79902158 79902285 -44173887 - ORR1C2 LTR MaLR -213 171 2 7 1194 180 0 0 0 chr9 79902304 79902324 -44173848 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1194 243 214 213 53 chr9 79902331 79902425 -44173747 + PB1D9 SINE Alu 3 111 -9 7 1194 363 259 118 25 chr9 79902353 79902472 -44173700 + B4 SINE B4 144 273 -19 7 1194 258 309 0 0 chr9 79902543 79902611 -44173561 + ID SINE ID 7 74 -150 7 1194 486 259 40 53 chr9 79902770 79902921 -44173251 - B1F2 SINE Alu 0 149 1 7 1194 233 229 21 0 chr9 79903562 79903610 -44172562 - RSINE1 SINE B4 -39 126 78 7 1194 1459 86 11 0 chr9 79903654 79903840 -44172332 + B2_Mm1a SINE B2 1 188 -5 7 1194 469 265 12 90 chr9 79903865 79904031 -44172141 - RSINE1 SINE B4 -12 153 1 7 1194 267 330 0 11 chr9 79904032 79904124 -44172048 - B4 SINE B4 -200 92 2 7 1194 200 214 0 23 chr9 79904315 79904358 -44171814 + GA-rich Low_complexity Low_complexity 3 44 0 7 1194 969 110 0 0 chr9 79904549 79904694 -44171478 + (TTTC)n Simple_repeat Simple_repeat 2 146 0 7 1194 1097 45 68 0 chr9 79904700 79904832 -44171340 - B1_Mus2 SINE Alu -6 141 1 7 1194 284 276 103 0 chr9 79904920 79905030 -44171142 + MER5A1 DNA MER1_type 13 135 -31 7 1194 285 51 0 0 chr9 79905122 79905161 -44171011 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1194 297 200 14 28 chr9 79905163 79905235 -44170937 + B1F SINE Alu 77 147 -2 7 1194 304 200 0 24 chr9 79905291 79905373 -44170799 + CT-rich Low_complexity Low_complexity 3 82 0 7 1194 489 190 0 12 chr9 79905379 79905464 -44170708 - B1_Mur3 SINE Alu -65 84 1 7 1194 538 261 75 30 chr9 79905515 79905649 -44170523 - B1F2 SINE Alu 0 149 10 7 1194 589 244 129 19 chr9 79905652 79905861 -44170311 - MLT1D LTR MaLR -22 483 252 7 1194 2554 85 70 6 chr9 79905985 79906329 -44169843 + RLTR9A LTR ERVK 3 368 0 7 1194 257 258 75 98 chr9 79906345 79906650 -44169522 + ETnERV2-int LTR ERVK 17 314 -3000 7 1194 189 0 0 0 chr9 79906651 79906672 -44169500 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 7 1194 450 0 0 0 chr9 79906729 79906779 -44169393 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1194 4792 150 80 101 chr9 79906779 79907665 -44168507 + RLTR45-int LTR ERVK 2098 3006 -4238 7 1194 229 264 0 0 chr9 79907665 79907718 -44168454 + MTC-int LTR MaLR 484 536 -722 7 1194 4792 150 80 101 chr9 79907718 79907905 -44168267 + RLTR45-int LTR ERVK 3007 3199 -4045 7 1194 284 306 28 9 chr9 79907901 79908010 -44168162 + ETnERV2-int LTR ERVK 1067 1177 -2137 7 1194 1700 226 95 171 chr9 79908008 79908626 -44167546 + ETnERV2-int LTR ERVK 1417 2649 -4757 7 1194 3731 54 15 100 chr9 79908626 79909145 -44167027 + MT2C_Mm LTR ERVL 1 475 0 7 1194 1700 207 94 206 chr9 79909145 79909193 -44166979 + ETnERV2-int LTR ERVK 2650 2691 -4715 7 1194 1467 72 16 16 chr9 79909193 79909377 -44166795 + B2_Mm2 SINE B2 3 186 -9 7 1194 1700 207 94 206 chr9 79909377 79909604 -44166568 + ETnERV2-int LTR ERVK 2692 2876 -4530 7 1194 234 0 0 0 chr9 79909604 79909630 -44166542 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1194 449 70 28 14 chr9 79909648 79909720 -44166452 + B1_Mm SINE Alu 74 146 -1 7 1194 210 75 36 36 chr9 79909722 79909777 -44166395 + (CAAAAA)n Simple_repeat Simple_repeat 4 58 0 7 1194 3326 146 88 18 chr9 79909784 79910398 -44165774 + RMER16-int LTR ERVK 1836 2492 -2914 7 1194 439 159 18 0 chr9 79910421 79910508 -44165664 + B1_Mus2 SINE Alu 2 94 -33 7 1194 1294 115 15 57 chr9 79910510 79910816 -44165356 - MuRRS4-int LTR ERV1 -2961 2102 1710 7 1194 261 0 0 0 chr9 79910816 79910845 -44165327 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1194 897 126 42 75 chr9 79910845 79910927 -44165245 - MuRRS4-int LTR ERV1 -3354 1709 1640 7 1194 1712 209 88 11 chr9 79910906 79911551 -44164621 - MuRRS4-int LTR ERV1 -3619 1444 750 7 1194 4927 117 34 20 chr9 79911537 79912295 -44163877 - RMER16-int LTR ERVK -3961 1445 677 7 1194 978 130 100 6 chr9 79912281 79912451 -44163721 - RMER16-int LTR ERVK -5080 326 141 7 1194 265 173 56 127 chr9 79912959 79913085 -44163087 - MuRRS4-int LTR ERV1 -3581 117 1 7 1194 3628 81 114 23 chr9 79913085 79913602 -44162570 - LTRIS2 LTR ERV1 0 564 1 7 1194 745 61 244 34 chr9 79913764 79913883 -44162289 + B1_Mus1 SINE Alu 1 144 -4 7 1194 350 102 0 33 chr9 79913888 79913949 -44162223 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 7 1194 183 42 0 0 chr9 79914028 79914052 -44162120 + (TTG)n Simple_repeat Simple_repeat 1 24 0 7 1194 345 260 30 30 chr9 79914053 79914152 -44162020 - PB1D9 SINE Alu -13 107 9 7 1194 378 0 0 0 chr9 79914241 79914283 -44161889 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1194 280 163 34 34 chr9 79914667 79914756 -44161416 + (CGG)n Simple_repeat Simple_repeat 2 90 0 7 1194 185 65 32 0 chr9 79914981 79915012 -44161160 + (CGGAG)n Simple_repeat Simple_repeat 5 36 0 7 1194 21 36 0 0 chr9 79915173 79915201 -44160971 + GC_rich Low_complexity Low_complexity 1 28 0 7 1194 1205 35 7 14 chr9 79916421 79916568 -44159604 + B1_Mus2 SINE Alu 2 147 0 7 1194 192 111 0 0 chr9 79916574 79916610 -44159562 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1194 366 186 236 75 chr9 79917225 79917319 -44158853 - PB1D7 SINE Alu -2 125 17 7 1194 811 241 84 15 chr9 79917363 79917565 -44158607 - B3 SINE B2 0 216 1 7 1194 194 0 95 24 chr9 79917637 79917679 -44158493 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1194 256 244 81 0 chr9 79917716 79917802 -44158370 - L2a LINE L2 -60 3366 3274 7 1194 711 161 68 0 chr9 79918179 79918297 -44157875 + B1_Mus2 SINE Alu 12 137 -10 7 1194 183 42 0 0 chr9 79918297 79918321 -44157851 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 7 1194 566 234 65 14 chr9 79918599 79918667 -44157505 + ID_B1 SINE B4 16 90 -134 7 1194 260 244 86 37 chr9 79918667 79918748 -44157424 + PB1D10 SINE Alu 4 88 -29 7 1194 297 0 0 0 chr9 79919876 79919909 -44156263 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1194 342 0 0 0 chr9 79919909 79919946 -44156226 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 1194 920 61 262 0 chr9 79920065 79920294 -44155878 - L1_Mus2 LINE L1 0 6566 6278 7 1194 1385 82 16 21 chr9 79920324 79920510 -44155662 + B2_Mm2 SINE B2 2 186 -9 7 1194 478 239 25 162 chr9 79920525 79920589 -44155583 - B3 SINE B2 -77 139 90 7 1194 1158 87 0 0 chr9 79920589 79920727 -44155445 - B1_Mus1 SINE Alu -10 138 1 7 1194 478 239 25 162 chr9 79920727 79920822 -44155350 - B3 SINE B2 -127 89 2 7 1194 396 296 108 104 chr9 79920905 79921184 -44154988 - B4 SINE B4 -11 281 2 7 1194 22 0 0 0 chr9 79921190 79921212 -44154960 + AT_rich Low_complexity Low_complexity 1 22 0 7 1194 612 228 15 45 chr9 79921623 79921756 -44154416 - B4A SINE B4 -72 220 92 7 1194 334 264 64 0 chr9 79921763 79921888 -44154284 - L1M4 LINE L1 -3322 2824 2692 7 1194 287 291 59 82 chr9 79921900 79921920 -44154252 - ID_B1 SINE B4 -46 246 220 7 1194 462 169 0 0 chr9 79921920 79921997 -44154175 - B1_Mur3 SINE Alu -1 148 72 7 1194 287 291 59 82 chr9 79921997 79922154 -44154018 - ID_B1 SINE B4 -46 219 1 7 1194 280 193 32 108 chr9 79922343 79922436 -44153736 - RSINE1 SINE B4 -35 130 45 7 1194 261 287 68 81 chr9 79922704 79922852 -44153320 - B1F SINE Alu 0 149 4 7 1194 1027 161 11 17 chr9 79922899 79923076 -44153096 - B2_Mm2 SINE B2 -19 176 1 7 1194 252 242 0 61 chr9 79923630 79923696 -44152476 + ORR1D1 LTR MaLR 307 368 -6 7 1194 222 37 0 0 chr9 79923863 79923890 -44152282 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7 1194 1141 78 21 0 chr9 79923890 79924031 -44152141 - B1_Mus1 SINE Alu 0 148 5 7 1194 22 0 0 0 chr9 79924135 79924157 -44152015 + AT_rich Low_complexity Low_complexity 1 22 0 7 1194 1141 274 157 71 chr9 79924680 79925202 -44150970 + Tigger7 DNA MER2_type 1 567 -1924 7 1194 270 136 0 0 chr9 79925202 79925246 -44150926 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1194 207 0 0 0 chr9 79925428 79925451 -44150721 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1194 434 331 7 29 chr9 79926100 79926237 -44149935 - B1F1 SINE Alu -13 136 3 7 1194 599 254 0 25 chr9 79926379 79926500 -44149672 - PB1D9 SINE Alu 0 120 3 7 1194 1493 238 135 3 chr9 79926822 79927185 -44148987 + MTD LTR MaLR 9 419 0 7 1194 474 269 35 13 chr9 79927209 79927367 -44148805 - B3A SINE B2 -5 211 56 7 1194 1110 95 0 7 chr9 79927490 79927638 -44148534 - B1_Mus1 SINE Alu 0 148 2 7 1194 341 122 232 0 chr9 79927694 79927776 -44148396 - Lx9 LINE L1 0 7644 7544 7 1194 1836 163 6 21 chr9 79927798 79928124 -44148048 - ORR1A4 LTR MaLR -8 321 1 7 1194 677 238 39 52 chr9 79928170 79928325 -44147847 - B3A SINE B2 -45 153 1 7 1194 365 275 12 0 chr9 79928422 79928502 -44147670 + ID4 SINE ID 2 82 -1 7 1194 587 319 21 21 chr9 79928675 79928864 -44147308 + ID_B1 SINE B4 35 223 -1 7 1194 183 80 0 0 chr9 79928871 79928896 -44147276 + (GGGAA)n Simple_repeat Simple_repeat 1 25 0 7 1194 985 240 54 4 chr9 79928901 79929146 -44147026 - ORR1E LTR MaLR -43 336 3 7 1194 2932 277 97 33 chr9 79929146 79930129 -44146043 - MTE-int LTR MaLR -51 1529 483 7 1194 5688 75 11 12 chr9 79930166 79930896 -44145276 + L1_Mus4 LINE L1 5908 6636 0 7 1194 312 262 12 0 chr9 79930920 79931004 -44145168 - B1F1 SINE Alu -22 127 43 7 1194 274 312 0 13 chr9 79931665 79931743 -44144429 - B4A SINE B4 -215 77 1 7 1194 335 0 0 0 chr9 79931763 79931800 -44144372 - L1Md_T LINE L1 -338 6244 6208 7 1194 3024 38 0 9 chr9 79931800 79932149 -44144023 + L1Md_T LINE L1 6237 6582 0 7 1194 875 251 79 59 chr9 79932386 79932702 -44143470 - MTE2a LTR MaLR -43 376 56 7 1194 773 28 278 0 chr9 79932702 79932810 -44143362 + B1_Mm SINE Alu 1 138 -9 8 1194 243 0 0 0 chr9 79932810 79932837 -44143335 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1194 583 314 82 71 chr9 79932837 79932887 -44143285 - MTE2a LTR MaLR -364 55 10 7 1194 299 307 154 22 chr9 79933134 79933281 -44142891 - B1F SINE Alu -10 139 1 8 1194 334 271 137 69 chr9 79933281 79933312 -44142860 - ID_B1 SINE B4 -125 99 60 8 1194 256 304 145 47 chr9 79933350 79933543 -44142629 - MLT1A0 LTR MaLR -144 221 10 8 1194 255 31 0 0 chr9 79933985 79934017 -44142155 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 8 1194 864 172 24 41 chr9 79934042 79934212 -44141960 + B2_Mm2 SINE B2 3 169 -26 8 1194 309 172 76 30 chr9 79934229 79934295 -44141877 + RMER30 DNA MER1_type 100 168 -34 8 1194 266 185 138 0 chr9 79934238 79934303 -44141869 - Charlie12 DNA MER1_type -2778 95 22 8 1194 216 0 0 0 chr9 79934332 79934356 -44141816 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1194 1271 48 0 0 chr9 79934356 79934502 -44141670 - B1_Mm SINE Alu 0 147 2 8 1194 24 0 0 0 chr9 79935400 79935424 -44140748 + AT_rich Low_complexity Low_complexity 1 24 0 8 1194 1286 25 25 6 chr9 79935989 79936149 -44140023 - L1Md_F3 LINE L1 -1 6583 6421 8 1194 711 196 42 28 chr9 79936278 79936420 -44139752 - B1_Mur3 SINE Alu 0 149 6 8 1194 410 288 67 67 chr9 79936440 79936589 -44139583 - B1F SINE Alu 0 149 1 8 1194 36 40 0 0 chr9 79936827 79936877 -44139295 + AT_rich Low_complexity Low_complexity 1 50 0 8 1194 201 147 0 0 chr9 79937474 79937508 -44138664 + (TA)n Simple_repeat Simple_repeat 1 34 0 8 1194 448 269 74 0 chr9 79937780 79937888 -44138284 + B1F2 SINE Alu 2 117 -32 8 1194 305 222 27 27 chr9 79938310 79938384 -44137788 + B4 SINE B4 1 74 -218 8 1194 237 318 44 29 chr9 79938361 79938429 -44137743 - BC1_Mm scRNA scRNA -76 76 8 8 1194 956 138 27 7 chr9 79938473 79938619 -44137553 - B1_Mur4 SINE Alu -1 149 1 8 1194 384 22 0 0 chr9 79938775 79938820 -44137352 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1194 697 271 38 38 chr9 79938857 79939068 -44137104 + B3 SINE B2 1 211 -5 8 1194 225 292 15 0 chr9 79939544 79939609 -44136563 + CT-rich Low_complexity Low_complexity 5 70 0 8 1194 263 301 133 58 chr9 79939611 79939643 -44136529 - B1F SINE Alu 0 149 102 8 1194 189 0 0 0 chr9 79939643 79939664 -44136508 + (GCCTG)n Simple_repeat Simple_repeat 5 25 0 8 1194 263 301 133 58 chr9 79939664 79939751 -44136421 - B1F SINE Alu -48 101 22 8 1194 180 0 0 0 chr9 79939784 79939804 -44136368 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1194 183 255 72 135 chr9 79940014 79940236 -44135936 + L3 LINE CR1 2067 2274 -2215 8 1194 213 39 0 0 chr9 79940413 79940439 -44135733 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1194 630 311 85 0 chr9 79940480 79940692 -44135480 - B4A SINE B4 -61 231 2 8 1194 24 0 0 0 chr9 79941181 79941205 -44134967 + AT_rich Low_complexity Low_complexity 1 24 0 8 1194 405 0 0 0 chr9 79941287 79941332 -44134840 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1194 25 51 0 0 chr9 79942536 79942575 -44133597 + AT_rich Low_complexity Low_complexity 1 39 0 8 1194 413 87 9 0 chr9 79942582 79942646 -44133526 - B2_Mm2 SINE B2 -102 114 47 8 1194 1442 73 11 0 chr9 79942693 79942870 -44133302 - B2_Mm1a SINE B2 -14 179 1 8 1194 267 103 0 0 chr9 79942998 79943037 -44133135 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 8 1194 464 253 44 32 chr9 79943268 79943390 -44132782 + B1F SINE Alu 8 123 -191 8 1194 195 42 0 0 chr9 79943684 79943708 -44132464 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 8 1194 723 69 250 0 chr9 79944097 79944213 -44131959 + B1_Mus1 SINE Alu 2 146 -2 8 1194 267 309 15 0 chr9 79944287 79944355 -44131817 + PB1D10 SINE Alu 12 80 -37 8 1194 525 322 55 16 chr9 79944588 79944771 -44131401 - B3A SINE B2 0 198 9 8 1194 197 65 32 0 chr9 79944976 79945007 -44131165 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1194 216 97 0 0 chr9 79945316 79945347 -44130825 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 8 1194 2253 128 10 15 chr9 79945391 79945795 -44130377 - MusHAL1 LINE L1 -1586 1126 725 8 1194 22 0 0 0 chr9 79946321 79946343 -44129829 + AT_rich Low_complexity Low_complexity 1 22 0 8 1194 28 0 0 0 chr9 79946910 79946938 -44129234 + AT_rich Low_complexity Low_complexity 1 28 0 8 1194 224 209 0 44 chr9 79947108 79947153 -44129019 - B1_Mur2 SINE Alu -35 114 72 8 1194 313 183 55 147 chr9 79947357 79947451 -44128721 + PB1D7 SINE Alu 1 84 -36 8 1194 214 288 12 36 chr9 79947451 79947534 -44128638 + RSINE1 SINE B4 3 83 -82 8 1194 941 82 82 0 chr9 79947608 79947742 -44128430 - B1_Mus1 SINE Alu -2 146 2 8 1194 399 284 85 5 chr9 79948187 79948361 -44127811 - ID_B1 SINE B4 -53 239 42 8 1194 263 365 0 25 chr9 79948459 79948577 -44127595 + CT-rich Low_complexity Low_complexity 2 116 0 8 1194 2606 288 30 48 chr9 79948596 79949476 -44126696 - Lx8 LINE L1 -144 7329 6466 8 1194 270 269 38 13 chr9 79949489 79949568 -44126604 - ID_B1 SINE B4 -3 221 141 8 1194 479 264 113 14 chr9 79949774 79949817 -44126355 - ID_B1 SINE B4 -67 157 115 8 1194 270 0 0 0 chr9 79949817 79949847 -44126325 + (CATA)n Simple_repeat Simple_repeat 3 32 0 8 1194 479 264 113 14 chr9 79949847 79949945 -44126227 - ID_B1 SINE B4 -110 114 4 8 1194 381 291 89 28 chr9 79950095 79950275 -44125897 + MIR SINE MIR 45 235 -27 8 1194 318 272 126 0 chr9 79950738 79950841 -44125331 + PB1D7 SINE Alu 3 118 -2 8 1194 29 84 0 0 chr9 79950989 79951060 -44125112 + AT_rich Low_complexity Low_complexity 1 71 0 8 1194 189 0 0 0 chr9 79951197 79951218 -44124954 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1194 22 70 0 0 chr9 79951848 79951891 -44124281 + AT_rich Low_complexity Low_complexity 1 43 0 8 1194 275 309 11 32 chr9 79952421 79952554 -44123618 - RSINE1 SINE B4 -165 127 2 8 1194 729 228 7 0 chr9 79953612 79953757 -44122415 + B1_Mur1 SINE Alu 1 146 -3 8 1195 416 308 77 0 chr9 79953979 79954109 -44122063 - B1F1 SINE Alu -1 148 9 8 1195 467 290 70 29 chr9 79954217 79954562 -44121610 - L1MC4a LINE L1 -329 7553 7195 8 1195 375 250 38 0 chr9 79954861 79954941 -44121231 - ID SINE ID -140 84 2 8 1195 317 307 95 54 chr9 79955215 79955363 -44120809 + RSINE1 SINE B4 8 161 -4 8 1195 252 0 0 0 chr9 79956000 79956028 -44120144 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 8 1195 954 82 22 0 chr9 79956042 79956177 -44119995 - B1_Mus1 SINE Alu -10 138 1 8 1195 615 342 48 51 chr9 79956180 79956516 -44119656 + MER2 DNA MER2_type 9 343 -2 8 1195 828 217 0 14 chr9 79956717 79956862 -44119310 + B1_Mur1 SINE Alu 7 149 0 8 1195 2966 56 15 2 chr9 79957059 79957454 -44118718 + MTB LTR MaLR 1 400 0 8 1195 189 0 0 0 chr9 79957626 79957647 -44118525 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 8 1195 247 116 23 0 chr9 79957789 79957832 -44118340 - B1_Mus2 SINE Alu -92 55 12 8 1195 236 324 61 61 chr9 79957832 79957902 -44118270 - B4A SINE B4 -150 140 28 8 1195 316 348 36 7 chr9 79958213 79958352 -44117820 + B1F2 SINE Alu 1 143 -6 8 1195 234 329 133 21 chr9 79959427 79959570 -44116602 - RSINE1 SINE B4 -3 162 4 8 1195 397 292 106 15 chr9 79959815 79959947 -44116225 - B1F SINE Alu -5 144 1 8 1195 213 311 127 90 chr9 79959974 79960108 -44116064 + B4A SINE B4 8 146 -146 8 1195 248 295 9 26 chr9 79960181 79960296 -44115876 + CT-rich Low_complexity Low_complexity 3 115 0 8 1195 21 0 0 0 chr9 79960345 79960366 -44115806 + AT_rich Low_complexity Low_complexity 1 21 0 8 1195 1324 66 33 0 chr9 79960461 79960644 -44115528 - B2_Mm1t SINE B2 -4 189 1 8 1195 692 188 14 0 chr9 79960757 79960899 -44115273 - B1_Mur4 SINE Alu 0 149 3 8 1195 394 300 94 14 chr9 79961019 79961242 -44114930 - L1MC4 LINE L1 -932 7110 6870 8 1195 994 127 0 0 chr9 79961310 79961452 -44114720 - B1_Mur4 SINE Alu -7 143 2 8 1195 753 62 8 43 chr9 79962285 79962402 -44113770 - B1_Mus2 SINE Alu 0 147 35 8 1195 657 277 72 0 chr9 79962456 79962622 -44113550 - B4 SINE B4 -112 180 3 8 1195 290 327 70 17 chr9 79962757 79962872 -44113300 - MIR SINE MIR -26 236 116 8 1195 185 238 24 0 chr9 79963221 79963263 -44112909 - L2a LINE L2 -44 3382 3340 8 1195 473 195 0 12 chr9 79963849 79963932 -44112240 - ID4 SINE ID 0 83 2 8 1195 320 350 0 37 chr9 79964088 79964195 -44111977 - RSINE1 SINE B4 -61 104 2 8 1195 24 53 0 0 chr9 79964845 79964883 -44111289 + AT_rich Low_complexity Low_complexity 1 38 0 8 1195 754 229 48 43 chr9 79965042 79965229 -44110943 - B3A SINE B2 -4 194 7 8 1195 413 303 20 10 chr9 79965508 79965608 -44110564 + RSINE1 SINE B4 26 126 -39 8 1195 239 291 66 191 chr9 79965710 79965846 -44110326 + RMER30 DNA MER1_type 1 119 -83 8 1195 470 254 122 8 chr9 79965815 79965946 -44110226 - B1_Mur2 SINE Alu -2 147 2 8 1195 232 250 50 0 chr9 79967001 79967061 -44109111 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 8 1195 227 271 51 0 chr9 79967102 79967161 -44109011 + BC1_Mm scRNA scRNA 17 78 -74 8 1195 254 333 130 0 chr9 79967194 79967356 -44108816 + ZP3AR Satellite Satellite 6 188 -24 8 1195 220 254 51 0 chr9 79967332 79967391 -44108781 + BC1_Mm scRNA scRNA 17 78 -74 8 1195 237 271 51 0 chr9 79967424 79967483 -44108689 + BC1_Mm scRNA scRNA 17 78 -74 8 1195 268 360 116 0 chr9 79967516 79967680 -44108492 + ZP3AR Satellite Satellite 6 188 -24 9 1195 245 254 51 0 chr9 79967656 79967715 -44108457 + BC1_Mm scRNA scRNA 17 78 -74 9 1195 238 358 130 0 chr9 79967702 79967864 -44108308 + ZP3AR Satellite Satellite 6 188 -24 9 1195 242 246 53 0 chr9 79967840 79967897 -44108275 + BC1_Mm scRNA scRNA 17 76 -76 9 1195 25 0 0 0 chr9 79967924 79967949 -44108223 + AT_rich Low_complexity Low_complexity 1 25 0 9 1195 319 288 188 14 chr9 79968230 79968438 -44107734 + L1MC4 LINE L1 7155 7398 -644 9 1195 323 324 120 48 chr9 79968685 79968935 -44107237 + L1MC4 LINE L1 7719 7986 -56 9 1195 26 30 0 0 chr9 79969212 79969245 -44106927 + AT_rich Low_complexity Low_complexity 1 33 0 9 1195 1177 40 0 20 chr9 79969369 79969507 -44106665 + B1_Mus1 SINE Alu 1 138 -10 9 1195 240 59 0 0 chr9 79969507 79969541 -44106631 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1195 1177 40 0 20 chr9 79969541 79969553 -44106619 + B1_Mus1 SINE Alu 139 148 0 9 1195 742 254 48 10 chr9 79970314 79970521 -44105651 + B3 SINE B2 1 215 -1 9 1195 574 130 362 0 chr9 79970749 79970887 -44105285 - URR1A DNA MER1_type -2 224 37 9 1195 378 259 46 24 chr9 79971127 79971323 -44104849 - B4 SINE B4 -50 242 3 9 1195 395 295 0 0 chr9 79971358 79971453 -44104719 - B1F SINE Alu -50 99 5 9 1195 214 277 30 15 chr9 79971836 79971902 -44104270 - ID SINE ID -152 72 6 9 1195 25 31 0 0 chr9 79971971 79972003 -44104169 + AT_rich Low_complexity Low_complexity 1 32 0 9 1195 215 307 147 10 chr9 79972389 79972491 -44103681 - PB1D10 SINE Alu -1 116 1 9 1195 3728 63 29 2 chr9 79972545 79973024 -44103148 - L1_Mus1 LINE L1 0 6567 6076 9 1195 376 331 36 29 chr9 79973031 79973171 -44103001 - B1_Mur1 SINE Alu -7 142 2 9 1195 401 250 31 55 chr9 79973712 79973839 -44102333 - B1_Mur4 SINE Alu 0 150 27 9 1195 888 123 0 0 chr9 79974450 79974580 -44101592 + B2_Mm2 SINE B2 40 169 -26 9 1195 185 254 36 0 chr9 79974601 79974656 -44101516 + MIR SINE MIR 174 230 -32 9 1195 312 235 15 0 chr9 79974875 79974943 -44101229 + B3A SINE B2 102 170 -28 9 1195 1344 86 0 5 chr9 79975128 79975316 -44100856 - B2_Mm2 SINE B2 -8 187 1 9 1195 306 184 66 0 chr9 79975380 79975456 -44100716 - L1MC LINE L1 -3718 2428 2348 9 1195 21 0 0 0 chr9 79975610 79975631 -44100541 + AT_rich Low_complexity Low_complexity 1 21 0 9 1195 395 241 48 43 chr9 79975759 79975929 -44100243 - B3A SINE B2 -1 194 21 9 1195 322 375 54 5 chr9 79975956 79976141 -44100031 + B4A SINE B4 1 194 -98 9 1195 932 231 36 59 chr9 79976174 79976239 -44099933 + B3 SINE B2 1 62 -154 9 1195 396 0 0 0 chr9 79976239 79976283 -44099889 + (TTG)n Simple_repeat Simple_repeat 2 45 0 9 1195 1057 71 0 41 chr9 79976283 79976429 -44099743 - B1_Mus2 SINE Alu -7 140 1 9 1195 932 231 36 59 chr9 79976429 79976583 -44099589 + B3 SINE B2 63 215 -1 9 1195 274 324 49 0 chr9 79976663 79976765 -44099407 - RSINE1 SINE B4 -56 109 3 9 1195 351 272 16 58 chr9 79976806 79976927 -44099245 - PB1D7 SINE Alu -4 116 1 9 1195 217 343 83 55 chr9 79977001 79977146 -44099026 - B1F SINE Alu 0 149 1 9 1195 291 315 130 8 chr9 79977391 79977522 -44098650 + RSINE1 SINE B4 3 149 -16 9 1195 25 0 0 0 chr9 79977760 79977785 -44098387 + AT_rich Low_complexity Low_complexity 1 25 0 9 1195 356 236 90 9 chr9 79977870 79977981 -44098191 - Lx5 LINE L1 -7 7043 6924 9 1195 379 297 154 15 chr9 79978118 79978313 -44097859 - L1MB7 LINE L1 -288 5896 5675 9 1195 297 354 108 0 chr9 79978733 79978891 -44097281 - MER2 DNA MER2_type -64 281 107 9 1195 1101 95 0 0 chr9 79979135 79979283 -44096889 + B1_Mus1 SINE Alu 1 148 0 9 1195 219 218 29 87 chr9 79979509 79979613 -44096559 - ID4_ SINE ID -51 101 2 9 1195 898 145 0 7 chr9 79979658 79979797 -44096375 - B1_Mur4 SINE Alu -9 141 4 9 1195 755 231 75 10 chr9 79980336 79980537 -44095635 + B3 SINE B2 1 214 -2 9 1195 215 328 44 15 chr9 79981649 79981717 -44094455 + PB1 SINE Alu 53 122 -5 9 1195 425 182 186 24 chr9 79982267 79982391 -44093781 - B1_Mur1 SINE Alu -5 144 1 9 1195 759 202 103 5 chr9 79982412 79982606 -44093566 - B3 SINE B2 -3 213 1 9 1195 185 0 40 0 chr9 79983141 79983166 -44093006 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1195 579 186 49 0 chr9 79983166 79983268 -44092904 - B1_Mur2 SINE Alu -10 139 33 9 1195 313 259 0 58 chr9 79983419 79983505 -44092667 + ID4 SINE ID 3 83 0 9 1195 495 0 0 0 chr9 79983824 79983879 -44092293 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 1195 28 71 0 0 chr9 79983962 79984018 -44092154 + AT_rich Low_complexity Low_complexity 1 56 0 9 1195 546 29 0 0 chr9 79984797 79984865 -44091307 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1195 330 244 133 0 chr9 79984869 79984959 -44091213 - PB1D9 SINE Alu -13 107 6 9 1195 289 179 128 0 chr9 79985016 79985094 -44091078 + L1MB8 LINE L1 6091 6178 0 9 1195 629 281 13 13 chr9 79985896 79986051 -44090121 + RSINE1 SINE B4 3 157 -8 9 1195 296 224 178 24 chr9 79986092 79986261 -44089911 - B2_Mm2 SINE B2 0 195 1 9 1195 758 217 0 0 chr9 79986289 79986432 -44089740 - B1_Mur1 SINE Alu -6 143 1 9 1195 355 311 0 11 chr9 79986465 79986556 -44089616 - 5S rRNA rRNA -31 90 1 9 1195 284 231 86 37 chr9 79987172 79987253 -44088919 + BC1_Mm scRNA scRNA 6 90 -62 9 1195 24 32 0 0 chr9 79987460 79987491 -44088681 + AT_rich Low_complexity Low_complexity 1 31 0 9 1195 204 97 0 0 chr9 79987616 79987647 -44088525 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1195 379 245 55 73 chr9 79987667 79987777 -44088395 - RSINE1 SINE B4 0 165 58 9 1195 386 218 39 0 chr9 79988338 79988416 -44087756 + RSINE1 SINE B4 4 84 -81 9 1195 329 250 54 0 chr9 79988416 79988430 -44087742 + B3A SINE B2 3 99 -99 9 1195 1176 54 0 0 chr9 79988775 79988922 -44087250 + B1_Mus2 SINE Alu 1 147 0 9 1195 448 299 46 26 chr9 79989533 79989684 -44086488 + RSINE1 SINE B4 2 155 -10 9 1195 180 0 0 0 chr9 79990433 79990453 -44085719 + (CA)n Simple_repeat Simple_repeat 2 21 0 9 1195 205 100 20 20 chr9 79991045 79991096 -44085076 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 9 1195 285 339 26 9 chr9 79993468 79993581 -44082591 + PB1 SINE Alu 13 127 0 9 1195 1609 11 0 0 chr9 79995315 79995504 -44080668 + MT2_Mm LTR ERVL 305 493 0 9 1195 209 130 0 61 chr9 79997850 79997899 -44078273 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 9 1195 253 355 43 0 chr9 79999266 79999359 -44076813 + PB1D7 SINE Alu 2 98 -22 9 1195 293 207 12 0 chr9 79999739 79999821 -44076351 + (TG)n Simple_repeat Simple_repeat 1 83 0 9 1195 538 238 104 7 chr9 79999854 79999998 -44076174 - ID_B1 SINE B4 -52 172 15 9 1195 1117 222 107 42 chr9 80000313 80000623 -44075549 + Lx3C LINE L1 6647 6976 0 1 1195 856 178 0 0 chr9 80000771 80000917 -44075255 + B1F SINE Alu 2 147 -2 2 1195 535 237 19 37 chr9 80001079 80001241 -44074931 + RSINE1 SINE B4 3 161 -4 3 1195 414 0 0 0 chr9 80001336 80001382 -44074790 + (GTTTG)n Simple_repeat Simple_repeat 3 48 0 4 1195 667 200 14 36 chr9 80001382 80001522 -44074650 - B1_Mur3 SINE Alu -12 137 1 5 1195 533 13 0 60 chr9 80001732 80001815 -44074357 - L1Md_F2 LINE L1 -12 6570 6493 6 1195 237 230 27 0 chr9 80001885 80001959 -44074213 - PB1 SINE Alu -28 99 24 7 1195 519 123 0 0 chr9 80002121 80002202 -44073970 + (GGA)n Simple_repeat Simple_repeat 3 83 0 8 1195 777 51 0 0 chr9 80002202 80002300 -44073872 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 9 1195 876 124 0 0 chr9 80002347 80002484 -44073688 + (GAAA)n Simple_repeat Simple_repeat 4 140 0 9 1195 904 228 5 20 chr9 80002583 80002784 -44073388 + B3 SINE B2 8 205 -11 1 1195 266 148 19 0 chr9 80002893 80002947 -44073225 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1 1195 327 220 173 9 chr9 80003114 80003224 -44072948 - RSINE1 SINE B4 -35 130 3 1 1195 404 294 87 0 chr9 80003401 80003527 -44072645 + ID_B1 SINE B4 84 220 -4 1 1195 727 209 7 7 chr9 80003534 80003674 -44072498 + B1_Mur2 SINE Alu 1 140 -9 1 1195 340 272 53 46 chr9 80004073 80004204 -44071968 + MER21B LTR ERV1 209 340 -523 1 1195 263 246 27 14 chr9 80004314 80004388 -44071784 + PB1 SINE Alu 51 125 -2 1 1195 431 214 44 18 chr9 80004391 80004505 -44071667 + PB1D9 SINE Alu 1 117 -3 1 1195 201 74 0 0 chr9 80004524 80004551 -44071621 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 1 1195 681 277 111 11 chr9 80004668 80004977 -44071195 - ORR1E LTR MaLR 0 379 12 1 1195 233 260 34 135 chr9 80005243 80005332 -44070840 - PB1D10 SINE Alu -24 93 14 2 1195 341 234 72 101 chr9 80005277 80005415 -44070757 - B4A SINE B4 -151 141 8 2 1195 457 30 45 0 chr9 80006418 80006484 -44069688 + (TTTTC)n Simple_repeat Simple_repeat 4 72 0 2 1195 513 47 0 0 chr9 80006484 80006548 -44069624 + (TCC)n Simple_repeat Simple_repeat 3 66 0 2 1195 558 172 180 0 chr9 80006554 80006676 -44069496 - B1_Mm SINE Alu -2 145 2 2 1195 439 275 33 0 chr9 80006746 80006866 -44069306 - RSINE1 SINE B4 -39 126 3 2 1195 288 309 36 0 chr9 80006876 80006986 -44069186 - PB1 SINE Alu -2 125 12 2 1195 232 294 62 89 chr9 80007211 80007323 -44068849 - B1F SINE Alu -5 144 36 2 1195 831 255 205 8 chr9 80007446 80007837 -44068335 - MER31A LTR ERV1 -4 481 14 2 1195 335 223 263 11 chr9 80008400 80008495 -44067677 + RSINE1 SINE B4 17 135 -30 2 1195 354 45 0 0 chr9 80008499 80008543 -44067629 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1195 231 266 0 0 chr9 80008621 80008685 -44067487 + ID SINE ID 8 71 -153 3 1195 297 253 13 0 chr9 80008855 80008930 -44067242 + ID_B1 SINE B4 145 220 -4 3 1195 212 86 0 28 chr9 80010340 80010376 -44065796 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 1195 375 267 285 24 chr9 80010381 80010546 -44065626 - B3 SINE B2 -8 208 1 3 1195 1328 232 119 41 chr9 80010621 80010990 -44065182 - MTD LTR MaLR 0 419 22 3 1195 219 125 0 0 chr9 80010995 80011035 -44065137 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 3 1195 286 302 14 93 chr9 80011055 80011194 -44064978 - B4A SINE B4 -40 252 125 3 1195 381 162 26 51 chr9 80011468 80011546 -44064626 - ID4_ SINE ID 0 83 8 3 1195 275 258 153 10 chr9 80011549 80011647 -44064525 - PB1D10 SINE Alu -5 112 1 3 1195 286 276 35 0 chr9 80011977 80012064 -44064108 + B1F SINE Alu 52 141 -8 3 1195 492 62 0 0 chr9 80014667 80014731 -44061441 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1195 27 0 0 0 chr9 80014753 80014780 -44061392 + AT_rich Low_complexity Low_complexity 1 27 0 4 1195 210 197 142 0 chr9 80014961 80015050 -44061122 - MIRm SINE MIR -109 167 60 4 1195 368 270 110 8 chr9 80015543 80015670 -44060502 + RSINE1 SINE B4 4 143 -22 4 1195 931 53 68 0 chr9 80015713 80015846 -44060326 + B1_Mus1 SINE Alu 7 148 0 4 1195 186 43 0 0 chr9 80015995 80016018 -44060154 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 4 1195 242 292 166 127 chr9 80016018 80016175 -44059997 - RSINE1 SINE B4 -1 164 2 4 1195 675 229 41 35 chr9 80016184 80016329 -44059843 - B1_Mur1 SINE Alu -3 146 1 4 1195 777 227 14 72 chr9 80016381 80016590 -44059582 - B3A SINE B2 0 198 2 4 1195 198 0 0 0 chr9 80016604 80016626 -44059546 + (TC)n Simple_repeat Simple_repeat 2 23 0 4 1195 333 0 0 0 chr9 80016645 80016682 -44059490 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1195 1201 41 0 14 chr9 80017212 80017360 -44058812 + B1_Mus1 SINE Alu 1 146 -2 5 1195 630 298 31 36 chr9 80017658 80017853 -44058319 + B3A SINE B2 3 196 -2 5 1195 220 48 29 100 chr9 80018140 80018210 -44057962 + A-rich Low_complexity Low_complexity 2 66 0 5 1195 649 252 22 0 chr9 80018227 80018305 -44057867 + ID SINE ID 1 81 -143 5 1195 417 274 28 0 chr9 80018305 80018411 -44057761 + PB1D9 SINE Alu 1 109 -11 5 1195 690 140 0 0 chr9 80018478 80018592 -44057580 + (TA)n Simple_repeat Simple_repeat 2 115 0 5 1195 368 226 43 0 chr9 80018939 80019032 -44057140 - PB1D10 SINE Alu -2 115 19 5 1195 219 69 0 0 chr9 80019168 80019197 -44056975 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1195 545 246 8 8 chr9 80019237 80019360 -44056812 + B3A SINE B2 1 123 -75 5 1195 630 121 0 0 chr9 80019381 80019497 -44056675 + (CA)n Simple_repeat Simple_repeat 1 116 0 6 1195 231 146 20 20 chr9 80019510 80019559 -44056613 - L2a LINE L2 -24 3402 3354 6 1195 237 305 101 44 chr9 80019915 80020073 -44056099 - MIRb SINE MIR -8 260 94 6 1195 181 317 33 0 chr9 80020439 80020499 -44055673 + MIRc SINE MIR 108 169 -99 6 1195 486 0 0 0 chr9 80020632 80020686 -44055486 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 1195 910 158 0 17 chr9 80020976 80021156 -44055016 + T-rich Low_complexity Low_complexity 3 179 0 6 1195 264 293 141 14 chr9 80021540 80021682 -44054490 - LTR33A_ LTR ERVL -263 268 109 6 1195 198 91 0 0 chr9 80021895 80021928 -44054244 + (TCTA)n Simple_repeat Simple_repeat 3 35 0 6 1195 1118 226 91 31 chr9 80022622 80022942 -44053230 - MTEa LTR MaLR 0 379 41 6 1195 21 0 0 0 chr9 80022949 80022970 -44053202 + AT_rich Low_complexity Low_complexity 1 21 0 6 1195 493 209 251 17 chr9 80022972 80023147 -44053025 - B3 SINE B2 0 216 1 7 1195 25 0 0 0 chr9 80023457 80023482 -44052690 + AT_rich Low_complexity Low_complexity 1 25 0 7 1195 29 0 0 0 chr9 80023516 80023545 -44052627 + AT_rich Low_complexity Low_complexity 1 29 0 7 1195 1033 50 0 14 chr9 80024317 80024459 -44051713 + (TTCCC)n Simple_repeat Simple_repeat 2 141 0 7 1195 783 21 0 0 chr9 80024459 80024552 -44051620 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 7 1195 361 295 19 51 chr9 80025274 80025431 -44050741 + RSINE1 SINE B4 2 153 -12 7 1195 380 202 0 148 chr9 80025799 80025921 -44050251 + MT2B LTR ERVL 161 264 -337 7 1195 1008 85 7 0 chr9 80025814 80025955 -44050217 + B1_Mus2 SINE Alu 6 147 0 7 1195 387 0 0 0 chr9 80026065 80026108 -44050064 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1195 705 203 0 86 chr9 80026122 80026261 -44049911 + B1_Mur2 SINE Alu 2 136 -13 7 1195 251 54 0 26 chr9 80026261 80026299 -44049873 + (TAA)n Simple_repeat Simple_repeat 2 38 0 8 1195 705 203 0 86 chr9 80026299 80026321 -44049851 + B1_Mur2 SINE Alu 137 149 0 7 1195 817 235 260 9 chr9 80027294 80027625 -44048547 + MTD LTR MaLR 6 419 0 8 1195 264 207 17 0 chr9 80027815 80027873 -44048299 + ID4_ SINE ID 14 72 -11 8 1195 372 305 184 7 chr9 80027968 80028278 -44047894 - Charlie1a DNA MER1_type -8 1447 1083 8 1195 218 193 18 0 chr9 80028298 80028355 -44047817 + G-rich Low_complexity Low_complexity 1 58 0 8 1195 489 76 0 0 chr9 80028400 80028466 -44047706 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 8 1195 395 284 202 34 chr9 80028771 80029186 -44046986 - Charlie1a DNA MER1_type -911 544 60 8 1195 366 23 0 0 chr9 80029389 80029432 -44046740 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1195 565 171 10 22 chr9 80029484 80029592 -44046580 + PB1D7 SINE Alu 13 120 0 8 1195 242 277 191 26 chr9 80029493 80029608 -44046564 + B4A SINE B4 108 241 -51 8 1195 401 236 43 86 chr9 80030024 80030079 -44046093 - B3 SINE B2 0 216 161 8 1195 369 0 0 0 chr9 80030079 80030120 -44046052 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 1195 401 236 43 86 chr9 80030120 80030226 -44045946 - B3 SINE B2 -56 160 62 8 1195 246 230 126 0 chr9 80030232 80030319 -44045853 - Lx8 LINE L1 -306 7167 7070 9 1195 211 323 16 0 chr9 80031171 80031233 -44044939 - B1F SINE Alu -20 129 67 9 1195 266 305 37 0 chr9 80031179 80031261 -44044911 - ID_B1 SINE B4 -26 198 114 9 1195 891 26 8 0 chr9 80031348 80031465 -44044707 + B1_Mm SINE Alu 30 147 0 9 1195 250 0 100 0 chr9 80031468 80031508 -44044664 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1195 441 267 8 40 chr9 80031576 80031701 -44044471 + B3 SINE B2 1 121 -95 9 1195 441 36 0 0 chr9 80031718 80031773 -44044399 + (CATA)n Simple_repeat Simple_repeat 4 58 0 9 1195 231 261 92 56 chr9 80032091 80032233 -44043939 - B1_Mur1 SINE Alu -2 147 1 9 1195 1172 61 0 0 chr9 80032583 80032730 -44043442 - B1_Mm SINE Alu 0 147 1 9 1195 392 227 8 40 chr9 80032919 80033043 -44043129 + PB1D9 SINE Alu 1 120 0 1 1195 272 27 27 0 chr9 80033052 80033089 -44043083 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1195 210 91 0 0 chr9 80033104 80033137 -44043035 + (CAACC)n Simple_repeat Simple_repeat 1 33 0 1 1195 204 27 0 98 chr9 80033632 80033673 -44042499 + (TGGGGG)n Simple_repeat Simple_repeat 4 40 0 1 1195 811 271 38 52 chr9 80033674 80033962 -44042210 + MTE2b LTR MaLR 41 324 -55 1 1195 372 43 0 0 chr9 80033965 80034011 -44042161 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 1 1195 232 261 0 0 chr9 80034014 80034079 -44042093 + MTE2b LTR MaLR 315 379 0 1 1195 345 256 66 11 chr9 80035242 80035333 -44040839 - ID_B1 SINE B4 -48 176 81 1 1195 485 229 110 0 chr9 80035346 80035455 -44040717 - B1_Mur1 SINE Alu -26 123 3 1 1195 395 279 217 57 chr9 80035517 80035692 -44040480 - B3 SINE B2 -10 206 4 1 1195 588 217 63 35 chr9 80035905 80036048 -44040124 - RSINE1 SINE B4 0 165 19 1 1195 403 280 178 6 chr9 80036731 80036900 -44039272 - B3A SINE B2 0 198 1 1 1195 524 275 47 0 chr9 80037039 80037188 -44038984 + RSINE1 SINE B4 4 159 -6 1 1195 1562 169 137 83 chr9 80037199 80037594 -44038578 + MTD LTR MaLR 1 416 -3 1 1195 597 119 0 0 chr9 80037594 80037695 -44038477 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1195 462 88 0 0 chr9 80037695 80037763 -44038409 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1195 2880 41 79 5 chr9 80037859 80038228 -44037944 + MTA_Mm LTR MaLR 1 396 0 1 1195 27 29 0 0 chr9 80038401 80038435 -44037737 + AT_rich Low_complexity Low_complexity 1 34 0 1 1195 31 26 0 0 chr9 80038509 80038547 -44037625 + AT_rich Low_complexity Low_complexity 1 38 0 1 1195 21 0 0 0 chr9 80038564 80038585 -44037587 + AT_rich Low_complexity Low_complexity 1 21 0 1 1195 492 311 19 0 chr9 80038676 80038837 -44037335 - RSINE1 SINE B4 0 165 2 1 1195 672 115 0 0 chr9 80038875 80038979 -44037193 + (CATA)n Simple_repeat Simple_repeat 2 105 0 1 1195 589 268 140 29 chr9 80039199 80039507 -44036665 - Lx8 LINE L1 -258 7215 6874 1 1195 498 163 54 0 chr9 80039783 80039875 -44036297 - B1F2 SINE Alu -30 119 23 1 1195 977 205 10 14 chr9 80040955 80041163 -44035009 - B3 SINE B2 0 216 10 1 1195 504 48 0 0 chr9 80041666 80041729 -44034443 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1195 420 185 415 7 chr9 80043363 80043510 -44032662 - B3 SINE B2 -9 207 1 1 1195 513 0 0 0 chr9 80043524 80043581 -44032591 + (TCCC)n Simple_repeat Simple_repeat 1 57 0 1 1195 840 97 0 0 chr9 80043581 80043705 -44032467 + (TCTA)n Simple_repeat Simple_repeat 4 127 0 1 1195 572 248 8 8 chr9 80043711 80043841 -44032331 - B1_Mur2 SINE Alu -19 130 1 1 1195 248 283 69 29 chr9 80044439 80044541 -44031631 + Tigger9a DNA Tigger 68 173 -559 1 1195 204 209 23 0 chr9 80044662 80044705 -44031467 + C-rich Low_complexity Low_complexity 3 46 0 1 1195 337 349 0 9 chr9 80044710 80044817 -44031355 - PB1D10 SINE Alu -11 106 1 1 1195 198 0 0 0 chr9 80044877 80044899 -44031273 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1195 414 276 340 21 chr9 80044930 80045259 -44030913 - L1MA6 LINE L1 -87 6210 5777 1 1195 566 275 114 22 chr9 80045403 80045705 -44030467 - L1MA4 LINE L1 -381 5931 5603 1 1195 575 269 107 21 chr9 80045801 80046139 -44030033 + L1M2 LINE L1 5030 5396 -747 1 1195 3791 74 0 0 chr9 80046520 80047004 -44029168 - L1Md_T LINE L1 0 6582 6099 1 1195 226 306 66 8 chr9 80047059 80047181 -44028991 - L1M4 LINE L1 -1455 4691 4563 1 1195 250 312 0 0 chr9 80047233 80047297 -44028875 - FLAM_A SINE Alu -226 69 6 1 1195 209 33 33 0 chr9 80047680 80047710 -44028462 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 1195 673 294 11 114 chr9 80050093 80050462 -44025710 - RMER15 LTR ERVL 0 575 245 1 1195 783 236 11 27 chr9 80051389 80051572 -44024600 - B3A SINE B2 -18 180 1 1 1195 297 51 0 0 chr9 80052275 80052314 -44023858 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1 1195 27 0 0 0 chr9 80052585 80052612 -44023560 + AT_rich Low_complexity Low_complexity 1 27 0 1 1195 924 227 108 114 chr9 80052977 80053355 -44022817 - MTE2a LTR MaLR -3 376 1 1 1195 207 0 0 0 chr9 80053562 80053585 -44022587 + (TTTAG)n Simple_repeat Simple_repeat 3 25 0 1 1195 23 33 0 0 chr9 80054235 80054265 -44021907 + AT_rich Low_complexity Low_complexity 1 30 0 1 1195 517 242 42 0 chr9 80054285 80054405 -44021767 - RSINE1 SINE B4 -15 150 26 1 1195 354 330 112 35 chr9 80054558 80055067 -44021105 - L2 LINE L2 -373 3046 2499 1 1195 418 238 225 34 chr9 80055296 80055474 -44020698 - B3 SINE B2 -4 212 1 1 1195 447 106 0 0 chr9 80056361 80056427 -44019745 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1195 875 272 15 114 chr9 80056856 80057180 -44018992 - B4A SINE B4 0 292 1 1 1195 372 292 84 36 chr9 80057180 80057347 -44018825 + MER21B LTR ERV1 460 634 -229 1 1195 301 304 30 60 chr9 80057382 80057515 -44018657 + MER21B LTR ERV1 714 842 -21 1 1195 236 304 59 25 chr9 80057523 80057641 -44018531 - MER87 LTR ERV1 -22 519 398 1 1195 954 106 0 0 chr9 80057816 80057957 -44018215 + (CA)n Simple_repeat Simple_repeat 2 142 0 1 1195 759 52 0 0 chr9 80058315 80058411 -44017761 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 1 1195 1222 22 0 0 chr9 80058411 80058545 -44017627 - B1_Mus2 SINE Alu -12 135 2 1 1195 421 240 20 0 chr9 80058653 80058753 -44017419 + MTD LTR MaLR 18 119 -300 1 1195 860 216 173 26 chr9 80058851 80059117 -44017055 + MTD LTR MaLR 101 405 -14 1 1195 300 285 146 0 chr9 80059165 80059302 -44016870 + MIRb SINE MIR 81 237 -31 1 1195 3216 245 40 25 chr9 80059302 80060111 -44016061 + Lx7 LINE L1 6482 7302 -394 1 1195 251 148 17 100 chr9 80060115 80060175 -44015997 + RSINE1 SINE B4 111 165 0 1 1195 185 147 26 39 chr9 80060234 80060312 -44015860 + T-rich Low_complexity Low_complexity 3 79 0 1 1195 275 148 93 0 chr9 80060995 80061049 -44015123 + L2a LINE L2 3368 3426 0 1 1195 200 322 34 0 chr9 80061660 80061719 -44014453 + L2a LINE L2 3342 3402 -24 1 1195 234 250 94 0 chr9 80062199 80062263 -44013909 + ID4 SINE ID 3 72 -11 1 1195 414 296 17 0 chr9 80062529 80062644 -44013528 - PB1D7 SINE Alu 0 120 4 1 1195 216 0 0 0 chr9 80062714 80062738 -44013434 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1195 476 297 77 51 chr9 80062738 80062894 -44013278 - RSINE1 SINE B4 -5 160 1 1 1195 190 275 0 0 chr9 80063276 80063316 -44012856 - MIRc SINE MIR -62 206 167 1 1195 366 201 50 7 chr9 80064623 80064762 -44011410 + L1ME2 LINE L1 5852 6005 -173 1 1195 450 0 0 0 chr9 80065572 80065622 -44010550 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1195 299 159 29 0 chr9 80065939 80066008 -44010164 + CT-rich Low_complexity Low_complexity 3 73 0 1 1195 751 154 253 0 chr9 80066103 80066273 -44009899 - B3 SINE B2 -3 213 1 1 1195 23 33 0 0 chr9 80066345 80066375 -44009797 + AT_rich Low_complexity Low_complexity 1 30 0 1 1195 313 329 0 0 chr9 80067564 80067646 -44008526 - ID2 SINE ID 0 83 2 1 1195 251 286 16 0 chr9 80067772 80067835 -44008337 - ID4 SINE ID -11 72 9 1 1195 717 231 14 0 chr9 80068110 80068257 -44007915 - ID_B1 SINE B4 -2 222 74 1 1195 200 288 0 14 chr9 80068748 80068822 -44007350 + (TTTG)n Simple_repeat Simple_repeat 3 75 0 1 1195 295 274 108 101 chr9 80069886 80070154 -44006018 - ORR1E LTR MaLR -88 286 17 1 1195 434 311 9 0 chr9 80070720 80070826 -44005346 + RSINE1 SINE B4 2 108 -57 1 1195 318 260 89 50 chr9 80071433 80071534 -44004638 + PB1D10 SINE Alu 5 109 -8 1 1195 722 236 0 34 chr9 80071672 80071821 -44004351 + B1_Mur1 SINE Alu 2 145 -4 1 1195 207 244 0 0 chr9 80074194 80074235 -44001937 + L2c LINE L2 3328 3368 -19 1 1195 189 107 0 0 chr9 80075542 80075570 -44000602 + (TTCTCC)n Simple_repeat Simple_repeat 3 30 0 1 1195 853 257 22 0 chr9 80075582 80075765 -44000407 - B3 SINE B2 0 216 30 1 1195 859 292 30 86 chr9 80077133 80077419 -43998753 - L1MA5A LINE L1 -408 5889 5617 1 1195 514 256 27 152 chr9 80077419 80077603 -43998569 - RSINE1 SINE B4 0 165 5 1 1195 859 292 30 86 chr9 80077603 80077614 -43998558 - L1MA5A LINE L1 -681 5616 5610 1 1195 396 40 0 0 chr9 80077614 80077664 -43998508 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 1 1195 859 292 30 86 chr9 80077664 80077770 -43998402 - L1MA5A LINE L1 -688 5609 5508 1 1195 396 0 0 0 chr9 80077903 80077947 -43998225 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1195 527 330 53 46 chr9 80077971 80078254 -43997918 - Lx8 LINE L1 -195 7278 6994 1 1195 3366 301 79 35 chr9 80078255 80078724 -43997448 - L1MA5A LINE L1 -865 5278 4753 1 1195 356 59 0 19 chr9 80078724 80078776 -43997396 + (TTA)n Simple_repeat Simple_repeat 3 53 0 1 1195 3366 301 79 35 chr9 80078776 80079305 -43996867 - L1MA5A LINE L1 -1391 4752 4214 1 1195 3447 61 2 0 chr9 80079305 80079700 -43996472 + MTA_Mm LTR MaLR 1 396 0 1 1195 3366 301 79 35 chr9 80079700 80080512 -43995660 - L1MA5A LINE L1 -1930 4213 3388 1 1195 27 29 0 0 chr9 80080513 80080547 -43995625 + AT_rich Low_complexity Low_complexity 1 34 0 1 1195 4796 59 5 10 chr9 80080575 80081161 -43995011 - L1_Mus3 LINE L1 -6 6632 6050 1 1195 2091 275 123 19 chr9 80081294 80082134 -43994038 - Lx8 LINE L1 -363 7110 6184 1 1195 8313 30 19 1 chr9 80082261 80083480 -43992692 - L1Md_F2 LINE L1 0 6582 5344 1 1195 538 223 78 182 chr9 80083560 80083710 -43992462 - L1MA5A LINE L1 -2516 3361 3221 1 1195 1167 69 14 0 chr9 80083710 80083855 -43992317 - B1_Mus1 SINE Alu 0 148 2 1 1195 538 232 20 179 chr9 80083855 80084090 -43992082 - L1MA5A LINE L1 -2893 3250 3040 1 1195 810 74 0 0 chr9 80084117 80084225 -43991947 - B1_Mus1 SINE Alu -39 109 2 1 1195 259 254 17 0 chr9 80084271 80084330 -43991842 - L1_Mur3 LINE L1 -2902 2978 2919 1 149 216 256 11 79 chr9 80084952 80085041 -43991131 + GA-rich Low_complexity Low_complexity 4 86 0 1 1196 336 111 0 0 chr9 80085525 80085588 -43990584 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 2 1196 403 349 23 30 chr9 80085588 80085721 -43990451 - ID_B1 SINE B4 -14 210 79 2 1196 708 197 13 39 chr9 80085850 80086003 -43990169 - B1_Mur4 SINE Alu 0 150 2 2 1196 23 33 0 0 chr9 80087655 80087685 -43988487 + AT_rich Low_complexity Low_complexity 1 30 0 2 1196 3709 285 62 59 chr9 80087740 80088334 -43987838 - Lx8 LINE L1 -28 7445 6858 2 1196 769 261 79 20 chr9 80088334 80088537 -43987635 + B3 SINE B2 2 216 0 2 1196 3709 285 62 59 chr9 80088537 80089546 -43986626 - Lx8 LINE L1 -616 6857 5837 2 1196 293 227 0 51 chr9 80089538 80089617 -43986555 + Lx7 LINE L1 5765 5842 -1854 2 1196 451 268 183 44 chr9 80090134 80090407 -43985765 - L1MB2 LINE L1 -17 6154 5844 2 1196 339 25 0 0 chr9 80090421 80090461 -43985711 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1196 244 274 69 35 chr9 80090465 80090552 -43985620 + PB1 SINE Alu 38 127 0 2 1196 1787 21 0 0 chr9 80090559 80090749 -43985423 + B2_Mm1t SINE B2 2 191 -2 2 1196 388 264 21 35 chr9 80090766 80090911 -43985261 - L1MB7 LINE L1 -331 5853 5711 2 1196 1553 42 16 0 chr9 80091266 80091457 -43984715 - L1_Mus1 LINE L1 -502 6065 5872 2 1196 4281 33 29 0 chr9 80091457 80091945 -43984227 + L1_Mus1 LINE L1 6066 6567 0 2 1196 1060 275 91 21 chr9 80092018 80092349 -43983823 - MTE2b LTR MaLR -20 359 6 2 1196 1018 141 7 32 chr9 80092461 80092615 -43983557 - B1_Mur4 SINE Alu 0 150 1 2 1196 326 206 0 29 chr9 80093176 80093246 -43982926 - MTE2b LTR MaLR -311 68 1 2 1196 13869 81 24 8 chr9 80094565 80097317 -43978855 + L1VL2 LINE L1 191 2989 -626 2 1196 690 160 127 8 chr9 80097483 80097609 -43978563 - URR1A DNA MER1_type -85 141 1 2 1196 701 221 21 0 chr9 80098352 80098492 -43977680 + B3 SINE B2 1 143 -73 2 1196 227 227 0 0 chr9 80099360 80099404 -43976768 - ID4_ SINE ID -5 78 35 2 1196 303 226 0 0 chr9 80099455 80099517 -43976655 - B1F SINE Alu -1 148 87 2 1196 253 232 165 35 chr9 80099517 80099540 -43976632 - ID_B1 SINE B4 -1 223 128 2 1196 30 69 0 0 chr9 80100568 80100626 -43975546 + AT_rich Low_complexity Low_complexity 1 58 0 2 1196 265 200 31 0 chr9 80102454 80102519 -43973653 - L1MD1 LINE L1 -2 6240 6174 2 1196 514 315 50 6 chr9 80103343 80103525 -43972647 + MER58A DNA MER1_type 30 219 -5 2 1196 841 267 17 0 chr9 80103863 80104043 -43972129 - B3 SINE B2 -27 189 7 2 1196 336 282 204 24 chr9 80104480 80104691 -43971481 + MIR SINE MIR 1 249 -13 2 1196 192 77 0 0 chr9 80105253 80105279 -43970893 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 1196 474 284 142 0 chr9 80105819 80106002 -43970170 - Tigger7 DNA MER2_type -2278 213 5 2 1196 864 296 74 0 chr9 80106980 80107250 -43968922 - B4A SINE B4 -2 290 1 2 1196 536 207 54 9 chr9 80107521 80107633 -43968539 + PB1D10 SINE Alu 1 117 0 2 1196 557 228 0 0 chr9 80107860 80107961 -43968211 - PB1D10 SINE Alu -7 110 10 2 1196 807 164 39 0 chr9 80107999 80108127 -43968045 - B1_Mur4 SINE Alu -15 135 3 2 1196 684 294 79 70 chr9 80108826 80109195 -43966977 - MTEa LTR MaLR -5 374 3 2 1196 1334 122 16 0 chr9 80109670 80109859 -43966313 + B2_Mm2 SINE B2 1 192 -3 2 1196 186 133 0 0 chr9 80112595 80112625 -43963547 + (TTAA)n Simple_repeat Simple_repeat 2 31 0 2 1196 843 224 128 0 chr9 80112625 80112804 -43963368 - B3 SINE B2 -14 202 1 2 1196 225 0 0 0 chr9 80113336 80113361 -43962811 + (TATG)n Simple_repeat Simple_repeat 2 26 0 2 1196 743 290 127 15 chr9 80113367 80113706 -43962466 - Lx9 LINE L1 -181 7463 7087 2 1196 209 171 0 0 chr9 80114224 80114259 -43961913 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1196 261 98 0 0 chr9 80114710 80114751 -43961421 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1196 24 0 0 0 chr9 80114991 80115015 -43961157 + AT_rich Low_complexity Low_complexity 1 24 0 2 1196 238 306 65 0 chr9 80115668 80115776 -43960396 + MIRc SINE MIR 152 266 -2 2 1196 399 326 50 21 chr9 80116074 80116215 -43959957 - B3A SINE B2 -5 193 49 2 1196 4094 168 4 14 chr9 80116215 80116953 -43959219 - Lx5 LINE L1 -50 7000 6270 2 1196 320 259 23 40 chr9 80116977 80117150 -43959022 + (TATG)n Simple_repeat Simple_repeat 4 173 0 2 1196 231 296 44 15 chr9 80117077 80117214 -43958958 + (TG)n Simple_repeat Simple_repeat 2 142 0 2 1196 296 322 107 0 chr9 80117619 80117740 -43958432 - MER3 DNA MER1_type -74 135 2 2 1196 21 82 0 0 chr9 80118854 80118903 -43957269 + AT_rich Low_complexity Low_complexity 1 49 0 2 1196 1130 144 114 0 chr9 80118906 80119107 -43957065 - URR1A DNA MER1_type 0 226 3 2 1196 522 219 45 38 chr9 80119185 80119318 -43956854 + ID_B1 SINE B4 82 215 -9 2 1196 353 294 0 19 chr9 80119591 80119695 -43956477 + PB1 SINE Alu 2 103 -24 2 1196 888 184 0 0 chr9 80119950 80120091 -43956081 - B1_Mur1 SINE Alu -2 147 7 2 1196 501 261 54 40 chr9 80120224 80120372 -43955800 + B3A SINE B2 1 150 -48 2 1196 181 355 149 0 chr9 80120747 80120854 -43955318 + MIRc SINE MIR 44 166 -102 2 1196 1264 217 48 3 chr9 80121800 80122115 -43954057 - MYSERV6-int LTR ERVK -427 8532 8204 2 1196 212 305 17 0 chr9 80122275 80122334 -43953838 + ID2 SINE ID 17 76 -7 2 1196 382 222 13 6 chr9 80122494 80122600 -43953572 - ID4_ SINE ID -36 116 12 2 1196 465 267 47 58 chr9 80122621 80122792 -43953380 - ID_B1 SINE B4 0 224 56 2 1196 374 278 0 17 chr9 80122813 80122930 -43953242 + PB1D10 SINE Alu 3 117 0 2 1196 298 100 20 0 chr9 80123185 80123235 -43952937 - Lx8 LINE L1 -6 7467 7417 2 1196 233 207 0 65 chr9 80123726 80123788 -43952384 + ID4_ SINE ID 1 58 -25 2 1196 294 258 58 79 chr9 80125436 80125575 -43950597 + MER3 DNA MER1_type 52 187 -22 2 1196 388 195 0 109 chr9 80126900 80126992 -43949180 + ID4_ SINE ID 2 83 0 2 1196 23 54 0 0 chr9 80127405 80127442 -43948730 + AT_rich Low_complexity Low_complexity 1 37 0 2 1196 1401 222 132 11 chr9 80127967 80128323 -43947849 - MTD LTR MaLR -20 399 1 2 1196 248 282 25 25 chr9 80128569 80128649 -43947523 - BC1_Mm scRNA scRNA -71 81 2 2 1196 534 182 31 6 chr9 80128656 80128816 -43947356 + (TG)n Simple_repeat Simple_repeat 2 165 0 2 1196 23 0 0 0 chr9 80128825 80128848 -43947324 + AT_rich Low_complexity Low_complexity 1 23 0 2 1196 395 252 134 9 chr9 80131407 80131478 -43944694 + ID_B1 SINE B4 87 161 -63 2 1196 811 189 200 0 chr9 80131478 80131658 -43944514 + B3 SINE B2 1 216 0 2 1196 395 252 134 9 chr9 80131658 80131698 -43944474 + ID_B1 SINE B4 162 211 -13 2 1196 306 106 0 0 chr9 80131702 80131749 -43944423 + (CAA)n Simple_repeat Simple_repeat 3 49 0 2 1196 508 186 63 63 chr9 80131787 80131813 -43944359 - B4 SINE B4 -69 223 86 2 1196 647 120 9 36 chr9 80131813 80131925 -43944247 - B1_Mus2 SINE Alu -38 109 1 2 1196 235 128 0 49 chr9 80131895 80131936 -43944236 - MT2B2 LTR ERVL -297 287 249 2 1196 1721 179 49 52 chr9 80132216 80132662 -43943510 - RMER16 LTR ERVK 0 533 3 2 1196 234 0 0 0 chr9 80132837 80132863 -43943309 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1196 269 338 78 0 chr9 80132883 80133025 -43943147 + MER103 DNA DNA 5 157 -9 2 1196 351 304 79 75 chr9 80133012 80133064 -43943108 - CYRA11_Mm Unknown Y-chromosome -193 424 208 2 1196 1089 164 34 19 chr9 80133064 80133269 -43942903 + URR1B DNA MER1_type 18 225 0 2 1196 236 284 12 12 chr9 80134590 80134672 -43941500 - ID4_ SINE ID -1 82 1 2 1196 211 370 136 29 chr9 80135522 80135625 -43940547 + PB1D7 SINE Alu 1 114 -6 2 1196 219 298 24 16 chr9 80135896 80136022 -43940150 + GA-rich Low_complexity Low_complexity 3 129 0 2 1196 345 47 0 0 chr9 80136117 80136160 -43940012 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2 1196 277 262 87 0 chr9 80136164 80136267 -43939905 - PB1D9 SINE Alu -6 114 3 2 1196 873 113 0 0 chr9 80136418 80136559 -43939613 + (TG)n Simple_repeat Simple_repeat 2 142 0 2 1196 489 296 68 0 chr9 80136567 80136699 -43939473 - RSINE1 SINE B4 -22 143 3 2 1196 550 105 10 21 chr9 80136815 80136912 -43939260 + (CATA)n Simple_repeat Simple_repeat 1 96 0 2 1196 436 264 33 53 chr9 80137109 80137326 -43938846 - L1MA4 LINE L1 -279 6021 5806 2 1196 6539 150 35 12 chr9 80137893 80139751 -43936421 - Lx3C LINE L1 -448 6528 4650 2 1196 1545 174 46 17 chr9 80139748 80140099 -43936073 + L1_Mur1 LINE L1 1992 2352 -3534 2 1196 326 310 26 8 chr9 80142357 80142474 -43933698 - MER20B DNA MER1_type -232 551 433 2 1196 30 0 0 0 chr9 80143243 80143273 -43932899 + AT_rich Low_complexity Low_complexity 1 30 0 2 1196 402 100 0 0 chr9 80143524 80143584 -43932588 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1196 21 57 0 0 chr9 80144341 80144376 -43931796 + AT_rich Low_complexity Low_complexity 1 35 0 2 1196 182 65 65 0 chr9 80145099 80145130 -43931042 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 2 1196 366 61 0 0 chr9 80145323 80145372 -43930800 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1196 861 151 99 60 chr9 80146299 80146532 -43929640 - Lx7 LINE L1 -4 7692 7451 2 1196 195 250 0 0 chr9 80147131 80147183 -43928989 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1196 864 283 61 77 chr9 80147277 80147656 -43928516 - MTE2a LTR MaLR -6 373 1 2 1196 378 0 0 0 chr9 80148616 80148658 -43927514 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1196 881 206 85 0 chr9 80149202 80149401 -43926771 - B3 SINE B2 0 216 1 3 1196 189 74 0 0 chr9 80150859 80150886 -43925286 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 3 1196 284 242 30 81 chr9 80151736 80151835 -43924337 - PB1D7 SINE Alu 0 120 27 3 1196 4210 52 0 2 chr9 80152171 80152764 -43923408 - L1Md_F2 LINE L1 0 6582 6017 3 1196 561 88 0 0 chr9 80153002 80153082 -43923090 + (TCCA)n Simple_repeat Simple_repeat 2 81 0 3 1196 256 211 123 27 chr9 80153083 80153156 -43923016 - B1_Mm SINE Alu -12 137 58 3 1196 363 96 0 0 chr9 80154133 80154185 -43921987 + (TGG)n Simple_repeat Simple_repeat 3 54 0 3 1196 182 229 0 77 chr9 80154231 80154283 -43921889 + MIRb SINE MIR 202 249 -19 3 1196 405 290 7 27 chr9 80154286 80154435 -43921737 + (TG)n Simple_repeat Simple_repeat 1 146 0 3 1196 294 259 79 6 chr9 80158322 80158424 -43917748 - ID4_ SINE ID -41 111 5 3 1196 189 107 0 0 chr9 80161077 80161105 -43915067 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1196 432 0 0 0 chr9 80161134 80161182 -43914990 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1196 974 226 0 19 chr9 80161312 80161520 -43914652 - B3 SINE B2 -10 206 3 3 1196 625 291 6 0 chr9 80161568 80161747 -43914425 - B3A SINE B2 -17 181 2 3 1196 519 17 0 0 chr9 80162628 80162688 -43913484 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1196 189 0 0 0 chr9 80162688 80162708 -43913464 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1196 286 268 58 67 chr9 80163420 80163540 -43912632 + PB1D7 SINE Alu 1 119 -1 3 1196 243 146 0 0 chr9 80165505 80165546 -43910626 + (CAT)n Simple_repeat Simple_repeat 1 41 0 3 1196 215 307 152 38 chr9 80165690 80165795 -43910377 - PB1D10 SINE Alu 0 117 1 3 1196 3621 12 7 0 chr9 80166225 80166663 -43909509 + L1Md_T LINE L1 6166 6582 0 3 1196 9171 9 0 0 chr9 80166747 80168301 -43907871 - L1Md_T LINE L1 0 6582 5029 3 1196 269 339 26 0 chr9 80168997 80169112 -43907060 + B4A SINE B4 2 119 -173 3 1196 2536 59 3 0 chr9 80169134 80169471 -43906701 - ORR1A1 LTR MaLR -8 338 1 3 1196 259 194 157 43 chr9 80169539 80169609 -43906563 + B4 SINE B4 201 278 -14 3 1196 198 0 0 0 chr9 80169622 80169644 -43906528 + (CCTA)n Simple_repeat Simple_repeat 1 22 0 3 1196 369 0 0 0 chr9 80169644 80169684 -43906488 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1196 649 147 6 6 chr9 80169684 80169841 -43906331 + GA-rich Low_complexity Low_complexity 1 157 0 3 1196 207 0 0 0 chr9 80170035 80170058 -43906114 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1196 594 0 0 0 chr9 80170058 80170124 -43906048 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1196 584 281 65 13 chr9 80171438 80171593 -43904579 + RSINE1 SINE B4 3 165 0 3 1196 456 123 0 0 chr9 80171599 80171672 -43904500 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1196 763 205 112 5 chr9 80172213 80172327 -43903845 + L1MA6 LINE L1 5534 5650 -650 3 1196 2027 146 17 83 chr9 80172327 80172738 -43903434 + ORR1C2 LTR MaLR 1 384 0 3 1196 763 205 112 5 chr9 80172738 80172819 -43903353 + L1MA6 LINE L1 5651 5749 -551 3 1196 387 0 0 0 chr9 80172833 80172876 -43903296 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1196 438 305 45 45 chr9 80172904 80173038 -43903134 + B3A SINE B2 6 139 -54 3 1196 387 0 0 0 chr9 80173061 80173104 -43903068 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1196 993 272 151 19 chr9 80173168 80173592 -43902580 + L1MA6 LINE L1 5821 6300 0 3 1196 259 336 126 36 chr9 80173595 80173706 -43902466 + PB1 SINE Alu 5 125 -2 3 1196 59 46 0 0 chr9 80174353 80174440 -43901732 + AT_rich Low_complexity Low_complexity 1 87 0 3 1196 2142 158 65 0 chr9 80174817 80175204 -43900968 + MTC LTR MaLR 1 412 -9 3 1196 362 181 28 0 chr9 80175583 80175657 -43900515 + B3A SINE B2 2 78 -117 3 1196 198 0 0 0 chr9 80175657 80175679 -43900493 + (TTG)n Simple_repeat Simple_repeat 1 22 0 3 1196 26 50 0 0 chr9 80175890 80175930 -43900242 + AT_rich Low_complexity Low_complexity 1 40 0 3 1196 336 301 26 9 chr9 80176551 80176665 -43899507 - B1F SINE Alu 0 149 34 3 1196 468 0 0 0 chr9 80177115 80177167 -43899005 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1196 960 216 38 9 chr9 80177833 80178043 -43898129 + B3 SINE B2 1 216 0 3 1196 324 0 0 0 chr9 80178617 80178653 -43897519 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1196 4568 234 87 33 chr9 80178654 80179891 -43896281 + Lx9 LINE L1 6341 7644 0 3 1196 576 154 0 0 chr9 80179891 80179995 -43896177 + (CAA)n Simple_repeat Simple_repeat 3 106 0 3 1196 216 0 0 0 chr9 80182458 80182482 -43893690 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1196 22 0 0 0 chr9 80182525 80182547 -43893625 + AT_rich Low_complexity Low_complexity 1 22 0 3 1196 495 179 10 10 chr9 80183511 80183607 -43892565 + MER58D DNA MER1_type 284 379 -7 3 1196 3453 75 0 0 chr9 80184759 80185198 -43890974 - L1Md_T LINE L1 -248 6334 5896 3 1196 1938 65 0 0 chr9 80185198 80185444 -43890728 + L1Md_A LINE L1 6337 6582 0 3 1196 27 73 0 0 chr9 80186820 80186875 -43889297 + AT_rich Low_complexity Low_complexity 1 55 0 3 1196 222 171 0 0 chr9 80189128 80189169 -43887003 + T-rich Low_complexity Low_complexity 1 41 0 3 1196 234 91 0 0 chr9 80189169 80189202 -43886970 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 3 1196 1234 218 21 14 chr9 80190781 80191069 -43885103 + MTD LTR MaLR 1 290 -129 3 1196 279 0 0 0 chr9 80191791 80191822 -43884350 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1196 433 228 129 0 chr9 80192323 80192424 -43883748 - Lx5 LINE L1 -156 6894 6781 3 1196 345 207 188 55 chr9 80192441 80192569 -43883603 + Lx4B LINE L1 6898 7050 -8 3 1196 357 24 0 0 chr9 80192586 80192628 -43883544 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1196 744 58 0 0 chr9 80193627 80193730 -43882442 - L1_Mus1 LINE L1 0 6567 6465 3 1196 1637 82 0 0 chr9 80193731 80193938 -43882234 - L1_Mus1 LINE L1 -277 6290 6084 3 1196 4261 35 0 0 chr9 80193935 80194498 -43881674 + L1_Mus1 LINE L1 5510 6072 -495 3 1196 24 0 0 0 chr9 80194920 80194944 -43881228 + AT_rich Low_complexity Low_complexity 1 24 0 3 1196 462 281 0 97 chr9 80195671 80195856 -43880316 + MLT1A0 LTR MaLR 3 169 -196 3 1196 2128 239 78 12 chr9 80195961 80196477 -43879695 - Lx5 LINE L1 -18 7032 6483 3 1196 258 314 12 0 chr9 80196480 80196566 -43879606 + MLT1A0 LTR MaLR 268 354 -20 3 1196 187 335 43 37 chr9 80197983 80198144 -43878028 - L2a LINE L2 -66 3360 3199 3 1196 432 0 0 0 chr9 80198357 80198405 -43877767 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1196 359 299 120 50 chr9 80199632 80199931 -43876241 + L1M4 LINE L1 82 401 -6141 3 1196 751 250 99 56 chr9 80200288 80200610 -43875562 + RLTR40 LTR ERVK 1 336 -481 3 1196 342 0 0 0 chr9 80200614 80200652 -43875520 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1196 698 267 49 34 chr9 80200681 80200945 -43875227 + RLTR40 LTR ERVK 451 718 -99 3 1196 891 299 103 24 chr9 80201488 80202020 -43874152 + L1MA8 LINE L1 5713 6286 -5 3 1196 944 251 5 14 chr9 80202916 80203134 -43873038 - B3 SINE B2 0 216 1 3 1196 469 277 123 53 chr9 80203558 80203802 -43872370 - MTEa LTR MaLR -116 263 3 3 1196 879 90 124 0 chr9 80203802 80203947 -43872225 + B2_Mm2 SINE B2 2 164 -31 3 1196 326 257 76 0 chr9 80203970 80204075 -43872097 + MLT1F1 LTR MaLR 155 267 -302 3 1196 23 0 0 0 chr9 80204758 80204781 -43871391 + AT_rich Low_complexity Low_complexity 1 23 0 3 1196 2435 40 79 0 chr9 80204781 80205085 -43871087 - L1_Mus1 LINE L1 0 6567 6240 3 1196 223 147 0 0 chr9 80205133 80205167 -43871005 - B1_Mus2 SINE Alu -47 100 67 3 1196 319 222 192 0 chr9 80205138 80205237 -43870935 - B1F SINE Alu -23 126 9 3 1196 318 270 47 8 chr9 80205369 80205496 -43870676 - MER20B DNA MER1_type -370 413 282 3 1196 256 262 74 0 chr9 80205763 80205885 -43870287 + LTR37A LTR ERV1 276 406 -20 3 1196 578 270 75 5 chr9 80205974 80206175 -43869997 + L1M2 LINE L1 2624 2838 -3305 3 1196 274 242 16 16 chr9 80206188 80206251 -43869921 + ID SINE ID 21 83 -141 3 1196 3285 100 30 2 chr9 80206548 80207011 -43869161 + Lx LINE L1 6174 6649 -5 3 1196 231 36 0 0 chr9 80209133 80209161 -43867011 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1196 263 85 21 0 chr9 80209699 80209746 -43866426 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1196 267 301 24 78 chr9 80210631 80210797 -43865375 + LTR33A_ LTR ERVL 5 161 -370 3 1196 1233 164 18 9 chr9 80213422 80213644 -43862528 + URR1B DNA MER1_type 1 224 -1 3 1196 2660 90 72 26 chr9 80213698 80214087 -43862085 - MTB_Mm LTR MaLR 0 407 1 3 1196 284 323 45 0 chr9 80214225 80214358 -43861814 + RMER15 LTR ERVL 396 534 -41 3 1196 351 0 0 0 chr9 80214592 80214631 -43861541 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1196 271 244 58 0 chr9 80214645 80214731 -43861441 + L1MA9 LINE L1 6178 6268 -44 3 1197 390 248 90 57 chr9 80216126 80216368 -43859804 + MLT2D LTR ERVL 4 273 -191 3 1197 189 237 0 0 chr9 80217394 80217453 -43858719 + GA-rich Low_complexity Low_complexity 3 61 0 3 1197 423 0 0 0 chr9 80217463 80217510 -43858662 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 3 1197 300 229 0 0 chr9 80217630 80217691 -43858481 - RMER15 LTR ERVL -91 484 424 3 1197 367 330 106 22 chr9 80217761 80217941 -43858231 - Lx8 LINE L1 -249 7224 7030 3 1197 1019 182 35 30 chr9 80218572 80218804 -43857368 + Lx4B LINE L1 6807 7039 -19 3 1197 336 48 0 0 chr9 80218804 80218846 -43857326 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 3 1197 324 48 0 0 chr9 80220756 80220798 -43855374 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1197 389 374 36 18 chr9 80221731 80222006 -43854166 + L4 LINE RTE 1200 1479 -550 4 1197 400 255 496 0 chr9 80222325 80222464 -43853708 - ID_B1 SINE B4 -6 218 11 4 1197 547 245 105 54 chr9 80223078 80223354 -43852818 + L1_Mur2 LINE L1 3146 3435 -2442 4 1197 588 271 75 6 chr9 80223374 80223534 -43852638 + B3A SINE B2 6 176 -22 4 1197 498 17 0 0 chr9 80223539 80223598 -43852574 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1197 2959 122 0 4 chr9 80223616 80224075 -43852097 + L1_Mm LINE L1 5171 5627 -256 4 1197 581 256 6 6 chr9 80224067 80224236 -43851936 + Lx8 LINE L1 6966 7134 -339 4 1197 552 68 0 0 chr9 80224393 80224466 -43851706 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1197 388 372 36 75 chr9 80224549 80224828 -43851344 - B4 SINE B4 -20 272 5 4 1197 246 414 9 0 chr9 80224913 80225024 -43851148 + MIR3 SINE MIR 87 198 -10 4 1197 338 349 143 19 chr9 80225365 80225581 -43850591 + MLT1G1 LTR MaLR 253 495 -84 4 1197 630 297 0 0 chr9 80226934 80227062 -43849110 + RSINE1 SINE B4 19 146 -19 4 1197 2619 60 16 57 chr9 80227256 80227626 -43848546 + L1_Mus2 LINE L1 6205 6559 -7 4 1197 901 221 29 18 chr9 80228065 80228346 -43847826 + L1MA6 LINE L1 6015 6298 -2 4 1197 279 351 79 26 chr9 80228919 80229071 -43847101 + LTR33 LTR ERVL 335 494 -21 4 1197 1227 113 11 0 chr9 80229812 80229989 -43846183 + B2_Mm1t SINE B2 1 179 -14 4 1197 424 87 288 15 chr9 80230017 80230130 -43846042 + B2_Mm2 SINE B2 47 193 -2 4 1197 186 262 257 19 chr9 80231847 80231952 -43844220 - MIR SINE MIR -25 237 108 4 1197 788 253 72 43 chr9 80232523 80232899 -43843273 - L1ME1 LINE L1 -109 6070 5684 4 1197 22 0 0 0 chr9 80234929 80234951 -43841221 + AT_rich Low_complexity Low_complexity 1 22 0 4 1197 515 202 266 21 chr9 80235064 80235256 -43840916 - Lx4B LINE L1 -7 7051 6813 4 1197 573 191 0 0 chr9 80235287 80235402 -43840770 + CT-rich Low_complexity Low_complexity 2 116 0 4 1197 1100 71 7 0 chr9 80235409 80235550 -43840622 - B1_Mus2 SINE Alu -1 146 5 4 1197 477 90 0 0 chr9 80236495 80236562 -43839610 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1197 813 207 46 114 chr9 80236781 80237043 -43839129 + ORR1D1 LTR MaLR 3 246 -128 4 1197 746 219 24 75 chr9 80237026 80237238 -43838934 + ORR1D1 LTR MaLR 174 374 -10 4 1197 1257 108 5 5 chr9 80237481 80237677 -43838495 - Lx LINE L1 -2 6652 6457 4 1197 276 331 138 6 chr9 80238172 80238339 -43837833 + MIRb SINE MIR 49 237 -31 4 1197 546 16 0 0 chr9 80238353 80238416 -43837756 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1197 190 302 0 19 chr9 80238469 80238523 -43837649 + MER5B DNA MER1_type 93 145 -33 4 1197 226 288 149 15 chr9 80239687 80239821 -43836351 + MIR SINE MIR 13 164 -104 4 1197 1880 158 61 0 chr9 80239821 80240131 -43836041 + MTC LTR MaLR 3 331 -90 4 1197 198 143 0 0 chr9 80240143 80240178 -43835994 + (TTAGGG)n Simple_repeat Simple_repeat 3 37 0 4 1197 793 316 4 59 chr9 80240664 80240936 -43835236 - RMER15 LTR ERVL -19 556 300 4 1197 245 196 0 0 chr9 80241310 80241356 -43834816 + tRNA-Gly-GGA tRNA tRNA 1 46 -29 4 1197 25 31 0 0 chr9 80241620 80241652 -43834520 + AT_rich Low_complexity Low_complexity 1 32 0 4 1197 249 231 0 0 chr9 80242232 80242284 -43833888 - B1F SINE Alu -1 148 97 4 1197 248 349 0 11 chr9 80242310 80242397 -43833775 - ID_B1 SINE B4 -2 222 137 4 1197 503 342 26 14 chr9 80242410 80242570 -43833602 - ID_B1 SINE B4 -50 242 79 4 1197 560 288 86 24 chr9 80242573 80242701 -43833471 - L1MA7 LINE L1 -3 6288 6164 4 1197 180 125 0 0 chr9 80242701 80242733 -43833439 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1197 560 288 86 24 chr9 80242733 80242896 -43833276 - L1MA7 LINE L1 -128 6163 5980 4 1197 545 0 15 0 chr9 80243171 80243236 -43832936 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1197 8851 11 2 0 chr9 80243346 80244340 -43831832 + L1Md_A LINE L1 5587 6582 0 4 1197 194 278 35 142 chr9 80244615 80244728 -43831444 + L2c LINE L2 3287 3387 0 4 1197 32 0 0 0 chr9 80245823 80245855 -43830317 + AT_rich Low_complexity Low_complexity 1 32 0 4 1197 315 316 53 11 chr9 80245908 80246045 -43830127 + B4A SINE B4 3 144 -148 4 1197 260 174 43 0 chr9 80246883 80246929 -43829243 - B3A SINE B2 -150 48 1 4 1197 1491 80 0 54 chr9 80247169 80247393 -43828779 + LSU-rRNA_Hsa rRNA rRNA 4309 4520 -515 4 1197 249 139 0 0 chr9 80247539 80247582 -43828590 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 4 1197 1006 246 0 0 chr9 80247863 80248050 -43828122 - B3 SINE B2 -4 212 26 4 1197 1118 313 78 58 chr9 80248520 80249674 -43826498 - L1_Mur3 LINE L1 -3176 2704 1528 4 1197 369 62 0 0 chr9 80249718 80249766 -43826406 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1197 612 303 69 42 chr9 80251109 80251326 -43824846 - ID_B1 SINE B4 -1 223 1 4 1197 851 250 32 5 chr9 80251422 80251611 -43824561 + B3 SINE B2 1 194 -22 4 1197 575 270 24 8 chr9 80251632 80251759 -43824413 - B1F SINE Alu -10 139 11 4 1197 358 301 45 25 chr9 80251901 80252058 -43824114 + RSINE1 SINE B4 3 162 -3 4 1197 28 0 0 0 chr9 80252180 80252208 -43823964 + AT_rich Low_complexity Low_complexity 1 28 0 4 1197 301 176 71 29 chr9 80252264 80252334 -43823838 - ID4_ SINE ID -10 73 1 4 1197 27 108 0 0 chr9 80252749 80252860 -43823312 + AT_rich Low_complexity Low_complexity 1 111 0 4 1197 711 303 29 18 chr9 80253686 80253958 -43822214 + B4A SINE B4 2 276 -16 4 1197 222 171 0 0 chr9 80254006 80254047 -43822125 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1197 286 80 40 0 chr9 80254137 80254187 -43821985 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1197 1048 182 0 16 chr9 80255408 80255598 -43820574 + ORR1D1 LTR MaLR 1 187 -187 4 1197 227 268 18 0 chr9 80255598 80255654 -43820518 + CT-rich Low_complexity Low_complexity 4 60 0 4 1197 944 216 38 24 chr9 80255654 80255863 -43820309 + ORR1D1 LTR MaLR 155 366 -8 4 1197 183 156 0 0 chr9 80328635 80328667 -43747505 + GA-rich Low_complexity Low_complexity 1 32 0 4 1197 300 260 93 93 chr9 80329190 80329330 -43746842 + MTD LTR MaLR 1 140 -279 4 1197 434 265 77 61 chr9 80329771 80330032 -43746140 + Charlie2b DNA MER1_type 2517 2781 -1 4 1197 396 0 0 0 chr9 80330048 80330092 -43746080 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 4 1197 671 249 234 3 chr9 80331419 80331715 -43744457 + MTEb LTR MaLR 9 372 -7 4 1197 285 98 0 0 chr9 80331762 80331803 -43744369 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1197 454 268 26 43 chr9 80331803 80331920 -43744252 - RSINE1 SINE B4 -40 125 11 4 1197 1079 107 45 11 chr9 80333866 80334045 -43742127 - B2_Mm1a SINE B2 -8 185 1 4 1197 321 118 0 0 chr9 80334693 80334744 -43741428 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1197 677 47 0 0 chr9 80335717 80335802 -43740370 - L1Md_F2 LINE L1 -476 6106 6022 4 1197 843 270 41 0 chr9 80336095 80336291 -43739881 + B3 SINE B2 13 216 0 4 1197 243 319 0 0 chr9 80337462 80337575 -43738597 + A-rich Low_complexity Low_complexity 1 113 0 4 1197 237 33 0 0 chr9 80337576 80337606 -43738566 + (CAAAC)n Simple_repeat Simple_repeat 5 34 0 4 1197 995 244 10 0 chr9 80338035 80338232 -43737940 - B3 SINE B2 -1 215 17 4 1197 28 71 0 0 chr9 80338638 80338694 -43737478 + AT_rich Low_complexity Low_complexity 1 56 0 4 1197 3034 78 8 2 chr9 80338728 80339129 -43737043 - L1Md_F2 LINE L1 -13 6569 6167 4 1197 290 317 9 37 chr9 80339369 80339477 -43736695 - PB1D10 SINE Alu -11 106 2 4 1197 258 311 88 72 chr9 80340034 80340228 -43735944 - MER44C DNA MER2_type -119 614 418 4 1197 1937 36 4 4 chr9 80340228 80340475 -43735697 + L1Md_F2 LINE L1 5339 5585 -298 4 1197 8138 49 0 0 chr9 80340476 80341470 -43734702 + L1Md_F2 LINE L1 5587 6580 -2 4 1197 666 307 24 28 chr9 80341474 80341685 -43734487 - MER44C DNA MER2_type -324 409 200 4 1197 464 320 98 30 chr9 80341727 80341930 -43734242 - MER44C DNA MER2_type -514 219 3 4 1197 540 0 0 0 chr9 80345001 80345061 -43731111 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1197 261 0 0 0 chr9 80345061 80345089 -43731083 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1197 1170 65 0 0 chr9 80345818 80345987 -43730185 + (GA)n Simple_repeat Simple_repeat 1 169 0 4 1197 632 295 18 18 chr9 80346394 80346563 -43729609 - B3A SINE B2 -46 170 2 4 1197 926 123 6 0 chr9 80346967 80347129 -43729043 + (GA)n Simple_repeat Simple_repeat 2 164 0 4 1198 246 125 0 0 chr9 80347218 80347266 -43728906 + (TCTG)n Simple_repeat Simple_repeat 4 51 0 4 1198 542 261 34 0 chr9 80347290 80347409 -43728763 - B3 SINE B2 -68 148 26 4 1198 811 219 112 0 chr9 80347505 80347692 -43728480 + B3 SINE B2 3 210 -6 4 1198 244 333 143 14 chr9 80347906 80348192 -43727980 + L1M5 LINE L1 5470 5792 -448 4 1198 27 0 0 0 chr9 80348371 80348398 -43727774 + AT_rich Low_complexity Low_complexity 1 27 0 4 1198 21 0 0 0 chr9 80348532 80348553 -43727619 + AT_rich Low_complexity Low_complexity 1 21 0 4 1198 337 320 77 13 chr9 80348614 80348728 -43727444 - L1MB7 LINE L1 -179 6005 5881 4 1198 1268 126 16 0 chr9 80348728 80348918 -43727254 - B2_Mm2 SINE B2 -2 193 1 4 1198 337 320 77 13 chr9 80348918 80348958 -43727214 - L1MB7 LINE L1 -304 5880 5841 4 1198 592 254 61 21 chr9 80349059 80349374 -43726798 - L1_Mm LINE L1 -537 5775 5418 4 1198 245 278 159 36 chr9 80349523 80349825 -43726347 - L1M3 LINE L1 -844 5296 4958 4 1198 254 302 103 0 chr9 80350055 80350171 -43726001 - LFSINE_Vert SINE SINE -171 288 161 4 1198 649 285 137 47 chr9 80350494 80351043 -43725129 - L1MA8 LINE L1 -42 6249 5652 4 1198 270 291 160 54 chr9 80351638 80351841 -43724331 - MIRb SINE MIR -7 261 27 5 1198 1306 161 14 5 chr9 80351915 80352134 -43724038 - URR1B DNA MER1_type 0 225 5 5 1198 292 72 0 35 chr9 80352419 80352477 -43723695 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 5 1198 232 250 0 19 chr9 80353830 80353883 -43722289 - ORR1D1 LTR MaLR -269 105 54 5 1198 564 218 73 47 chr9 80355181 80355354 -43720818 + Lx4B LINE L1 6862 7038 -20 5 1198 252 86 0 0 chr9 80355355 80355390 -43720782 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1198 762 43 0 0 chr9 80355472 80355566 -43720606 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 5 1198 945 156 0 0 chr9 80355569 80355643 -43720529 + polypyrimidine Low_complexity Low_complexity 107 180 0 5 1198 1173 96 0 0 chr9 80355643 80355821 -43720351 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 5 1198 945 156 0 0 chr9 80355821 80355925 -43720247 + polypyrimidine Low_complexity Low_complexity 3 106 0 5 1198 201 111 0 0 chr9 80355925 80355952 -43720220 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 5 1198 321 132 19 0 chr9 80356545 80356598 -43719574 - Lx7 LINE L1 -489 7207 7154 5 1198 1239 206 62 94 chr9 80356605 80356766 -43719406 + Lx7 LINE L1 7245 7404 -292 5 1198 219 114 0 0 chr9 80356766 80356801 -43719371 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1198 1239 206 62 94 chr9 80356801 80357106 -43719066 + Lx7 LINE L1 7405 7696 0 5 1198 365 317 0 9 chr9 80358677 80358782 -43717390 - PB1D10 SINE Alu -11 106 3 5 1198 774 236 23 46 chr9 80359614 80359787 -43716385 - B3A SINE B2 -27 171 3 5 1198 297 246 0 0 chr9 80359867 80359932 -43716240 - ID4 SINE ID -17 66 2 5 1198 598 238 74 5 chr9 80360326 80360516 -43715656 - L1MA5 LINE L1 -39 6261 6059 5 1198 365 209 33 0 chr9 80360627 80360718 -43715454 - L1MA5 LINE L1 -392 5908 5815 5 1198 459 0 0 0 chr9 80360768 80360819 -43715353 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1198 468 304 37 90 chr9 80360830 80361018 -43715154 + B3A SINE B2 5 182 -16 5 1198 288 284 130 40 chr9 80361225 80361478 -43714694 - HAL1 LINE L1 -698 1809 1534 5 1198 292 381 47 16 chr9 80362630 80362800 -43713372 - MIRb SINE MIR -100 176 4 5 1198 327 206 59 0 chr9 80364083 80364151 -43712021 + ID4 SINE ID 3 74 -9 5 1198 691 56 0 0 chr9 80364342 80364431 -43711741 + B1_Mus2 SINE Alu 59 147 0 5 1198 349 24 44 66 chr9 80364431 80364522 -43711650 + (CAAA)n Simple_repeat Simple_repeat 4 92 0 5 1198 516 56 0 0 chr9 80364538 80364610 -43711562 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1198 3149 175 30 15 chr9 80364635 80365231 -43710941 - RLTR1D LTR ERV1 0 605 1 5 1198 1124 68 0 40 chr9 80365263 80365415 -43710757 + B1_Mus2 SINE Alu 2 147 0 5 1198 1185 61 0 20 chr9 80365444 80365582 -43710590 + B1_Mus1 SINE Alu 1 138 -10 5 1198 315 0 0 0 chr9 80365582 80365617 -43710555 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1198 1185 61 0 20 chr9 80365617 80365629 -43710543 + B1_Mus1 SINE Alu 139 148 0 5 1198 247 174 36 7 chr9 80365703 80365846 -43710326 + GA-rich Low_complexity Low_complexity 1 147 0 5 1198 1568 186 20 90 chr9 80366039 80366394 -43709778 - ORR1B1 LTR MaLR -8 386 57 5 1198 252 77 0 0 chr9 80366397 80366436 -43709736 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1198 1048 311 70 23 chr9 80366474 80367218 -43708954 - L1MA4 LINE L1 -370 5930 5083 5 1198 1301 228 1 33 chr9 80367326 80367722 -43708450 - L1_Rod LINE L1 -814 5326 4883 5 1198 301 359 124 22 chr9 80367725 80367910 -43708262 - L1M2 LINE L1 -3104 3039 2836 5 1198 236 242 0 0 chr9 80367937 80368003 -43708169 - L1MDa LINE L1 -4038 2595 2530 5 1198 442 357 82 27 chr9 80368093 80368504 -43707668 - L1MDa LINE L1 -4427 2130 1698 5 1198 312 244 85 47 chr9 80368864 80368962 -43707210 - RLTR20B1 LTR ERVK 0 560 460 5 1198 303 329 33 28 chr9 80370303 80370516 -43705656 - L1M5 LINE L1 -674 5566 5353 5 1198 615 62 0 0 chr9 80371368 80371448 -43704724 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 5 1198 3882 35 30 0 chr9 80371450 80371942 -43704230 - L1Md_F3 LINE L1 -25 6559 6053 5 1198 25489 60 128 4 chr9 80372175 80376648 -43699524 + L1Md_F2 LINE L1 561 5586 -297 5 1198 7874 52 2 2 chr9 80376648 80377632 -43698540 + L1Md_F2 LINE L1 5587 6570 -12 5 1198 4055 129 61 18 chr9 80378052 80378777 -43697395 + RMER6A LTR ERVK 1 756 0 5 1198 2738 163 120 12 chr9 80378979 80379495 -43696677 + RMER15 LTR ERVL 4 575 0 5 1198 263 372 35 28 chr9 80379717 80379858 -43696314 - L4 LINE RTE -674 1355 1214 5 1198 474 70 0 0 chr9 80380356 80380427 -43695745 + (CAACC)n Simple_repeat Simple_repeat 3 73 0 5 1198 628 284 204 25 chr9 80380427 80380522 -43695650 - ORR1D1 LTR MaLR -25 334 233 5 1198 366 23 0 0 chr9 80380522 80380565 -43695607 + (CAGG)n Simple_repeat Simple_repeat 4 46 0 5 1198 719 214 82 12 chr9 80380565 80380744 -43695428 - ORR1D1 LTR MaLR -127 232 11 5 1198 645 14 0 0 chr9 80380932 80381006 -43695166 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1198 230 231 19 0 chr9 80381780 80381832 -43694340 + Lx7 LINE L1 6819 6871 -825 5 1198 537 167 157 15 chr9 80381839 80381973 -43694199 + Lx7 LINE L1 6795 6947 -749 5 1198 290 320 0 20 chr9 80381973 80382075 -43694097 - RMER20B LTR ERVK -24 603 504 5 1198 422 295 72 39 chr9 80382384 80382564 -43693608 - RMER20B LTR ERVK -208 419 234 5 1198 2166 249 11 40 chr9 80382757 80383302 -43692870 + Lx6 LINE L1 6925 7453 -7 5 1198 1607 254 11 20 chr9 80383320 80383758 -43692414 + Lx7 LINE L1 6875 7308 -388 5 1198 204 247 0 27 chr9 80383788 80383863 -43692309 + T-rich Low_complexity Low_complexity 3 75 0 5 1198 369 141 0 0 chr9 80383863 80383934 -43692238 + (GA)n Simple_repeat Simple_repeat 1 71 0 5 1198 2133 199 65 22 chr9 80383951 80384507 -43691665 - Lx9 LINE L1 -10 7634 7055 5 1198 192 77 0 0 chr9 80384581 80384607 -43691565 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1198 23 0 0 0 chr9 80385006 80385029 -43691143 + AT_rich Low_complexity Low_complexity 1 23 0 5 1198 236 318 15 15 chr9 80385086 80385153 -43691019 - ID4 SINE ID -14 69 3 5 1198 419 298 147 47 chr9 80386207 80386397 -43689775 - MER58A DNA MER1_type -15 209 1 5 1198 574 122 61 0 chr9 80386434 80386549 -43689623 + L1_Mus3 LINE L1 6511 6632 -6 5 1198 285 293 71 24 chr9 80387117 80387201 -43688971 + LTR16E2 LTR ERVL 267 354 -214 5 1198 4169 135 83 0 chr9 80387206 80387977 -43688195 + L1_Mur2 LINE L1 4186 5020 -857 5 1198 279 0 0 0 chr9 80387978 80388009 -43688163 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1198 646 151 45 57 chr9 80388358 80388534 -43687638 + Lx7 LINE L1 7523 7696 0 5 1198 6958 71 6 0 chr9 80388635 80389523 -43686649 + RLTR13B1 LTR ERVK 1 893 0 5 1198 23 0 0 0 chr9 80389572 80389595 -43686577 + AT_rich Low_complexity Low_complexity 1 23 0 5 1198 29994 109 25 7 chr9 80389602 80396034 -43680138 - L1_Mus1 LINE L1 0 6567 98 5 1198 252 0 0 0 chr9 80396140 80396168 -43680004 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1198 2009 62 0 61 chr9 80396233 80396544 -43679628 - L1_Mm LINE L1 -2174 3709 3418 5 1198 7251 46 19 0 chr9 80396544 80397437 -43678735 + L1Md_F2 LINE L1 5671 6580 -2 5 1198 475 267 63 50 chr9 80397460 80397681 -43678491 - L1MC5 LINE L1 -128 7833 7610 5 1198 481 226 123 0 chr9 80397981 80398087 -43678085 - URR1B DNA MER1_type -106 119 1 5 1198 247 318 9 26 chr9 80399165 80399278 -43676894 - RMER5 LTR ERV1 -16 518 408 5 1198 705 294 141 31 chr9 80399385 80399740 -43676432 - RMER5 LTR ERV1 -139 395 2 5 1198 627 130 0 0 chr9 80400757 80400857 -43675315 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 5 1198 369 0 0 0 chr9 80403669 80403710 -43672462 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1198 724 298 27 42 chr9 80406322 80406655 -43669517 - Lx8 LINE L1 -1556 5917 5590 5 1198 333 306 0 40 chr9 80406683 80406809 -43669363 - Lx7 LINE L1 -1989 5707 5587 5 1198 2603 307 69 24 chr9 80406805 80408215 -43667957 - L1M2 LINE L1 -1088 5055 3564 5 1198 323 234 61 61 chr9 80408215 80408329 -43667843 - PB1D9 SINE Alu -2 118 5 5 1198 2603 307 69 24 chr9 80408329 80408521 -43667651 - L1M2 LINE L1 -2580 3563 3380 5 1198 541 273 36 30 chr9 80408535 80408701 -43667471 - RMER30 DNA MER1_type -34 168 2 5 1198 479 304 68 8 chr9 80408734 80409131 -43667041 - L1M2 LINE L1 -2555 3325 2900 5 1198 1686 236 97 41 chr9 80409134 80409592 -43666580 - RMER19C LTR ERVK 0 611 116 5 1198 451 308 60 8 chr9 80409768 80410135 -43666037 - L1_Rod LINE L1 -3198 2649 2264 5 1198 1289 259 124 42 chr9 80410147 80410533 -43665639 + MTD LTR MaLR 1 418 -1 5 1198 597 12 0 35 chr9 80411048 80411135 -43665037 + L1Md_F3 LINE L1 6484 6567 -17 5 1198 21 0 0 0 chr9 80411552 80411573 -43664599 + AT_rich Low_complexity Low_complexity 1 21 0 5 1198 627 309 43 65 chr9 80413035 80413425 -43662747 - ORR1E LTR MaLR 0 370 7 5 1198 495 0 0 0 chr9 80413500 80413555 -43662617 + (T)n Simple_repeat Simple_repeat 1 55 0 5 1198 36387 34 2 0 chr9 80413599 80420007 -43656165 - L1Md_T LINE L1 0 6585 66 5 1198 657 217 143 23 chr9 80420053 80420312 -43655860 - L1MA9 LINE L1 -2 6310 6021 5 1198 1829 169 78 6 chr9 80420312 80420670 -43655502 + ORR1C2 LTR MaLR 1 384 0 5 1198 3720 52 2 11 chr9 80420854 80421321 -43654851 - L1Md_F2 LINE L1 -2 6580 6118 5 1198 275 272 67 10 chr9 80423046 80423150 -43653022 + L2a LINE L2 3316 3425 -1 5 1198 414 0 0 0 chr9 80424392 80424438 -43651734 + (CAA)n Simple_repeat Simple_repeat 2 47 0 5 1198 727 243 75 143 chr9 80425224 80425623 -43650549 + RMER17C LTR ERVK 7 378 -32 5 1198 187 333 0 16 chr9 80426848 80426912 -43649260 + L4 LINE RTE 246 308 -1721 5 1198 268 194 14 0 chr9 80428173 80428245 -43647927 - Lx9 LINE L1 0 7644 7572 5 1198 2827 139 32 30 chr9 80428258 80428783 -43647389 - Lx4B LINE L1 -30 7028 6503 5 1198 1750 116 7 4 chr9 80428782 80429059 -43647113 - Lx4B LINE L1 -1182 5876 5599 5 1198 340 193 157 0 chr9 80429821 80429904 -43646268 + Lx8 LINE L1 6889 6984 -489 5 1198 963 272 87 38 chr9 80429921 80430268 -43645904 - ORR1D1 LTR MaLR -8 366 3 5 1198 552 345 112 9 chr9 80430277 80430698 -43645474 + Lx8 LINE L1 7008 7471 -2 5 1198 323 347 92 15 chr9 80431344 80431689 -43644483 - LTR33C LTR ERVL -17 612 238 6 1198 437 318 32 0 chr9 80431707 80431861 -43644311 - LTR33C LTR ERVL -457 172 14 6 1198 262 216 47 139 chr9 80431898 80431984 -43644188 + B1F SINE Alu 40 117 -32 6 1198 259 233 114 23 chr9 80432225 80432313 -43643859 - B3A SINE B2 -1 197 102 6 1198 387 0 0 0 chr9 80432345 80432388 -43643784 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1198 207 0 0 0 chr9 80432390 80432413 -43643759 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 1198 638 256 0 49 chr9 80432413 80432577 -43643595 + Lx6 LINE L1 7194 7349 -111 6 1198 1266 183 35 94 chr9 80432578 80432897 -43643275 - RMER10A LTR ERVL -141 301 2 6 1198 1572 217 35 6 chr9 80432899 80433247 -43642925 - Lx9 LINE L1 -871 6773 6416 5 1198 230 0 0 32 chr9 80433251 80433282 -43642890 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 1198 2632 198 79 3 chr9 80433305 80433898 -43642274 + Lx9 LINE L1 6919 7556 -88 6 1198 825 257 39 5 chr9 80433906 80434113 -43642059 + ID_B1 SINE B4 4 217 -7 6 1198 2068 207 117 6 chr9 80434605 80435091 -43641081 + RLTR12A LTR ERVK 1 540 -28 6 1198 822 251 124 38 chr9 80435092 80435439 -43640733 - RMER17C LTR ERVK -32 378 2 6 1198 605 256 27 9 chr9 80435941 80436117 -43640055 - B3 SINE B2 -9 184 1 6 1198 3033 254 69 30 chr9 80436157 80437110 -43639062 - Lx8 LINE L1 -94 7379 6390 6 1198 183 257 39 39 chr9 80437399 80437476 -43638696 - MIRc SINE MIR -172 96 20 6 1198 676 290 71 0 chr9 80437967 80438150 -43638022 + B3 SINE B2 20 215 -1 6 1198 522 312 18 0 chr9 80438207 80438377 -43637795 + Lx8 LINE L1 7144 7316 -157 6 1198 2650 170 11 84 chr9 80438644 80439165 -43637007 + RMER19C LTR ERVK 129 611 0 6 1198 498 251 153 34 chr9 80439187 80439422 -43636750 - L1M2 LINE L1 -746 5397 5135 6 1198 876 183 128 5 chr9 80439432 80439619 -43636553 - B3 SINE B2 -5 211 2 6 1198 488 65 13 0 chr9 80440002 80440079 -43636093 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1198 817 153 33 46 chr9 80441885 80442036 -43634136 - B1_Mur3 SINE Alu 0 149 1 6 1198 181 172 29 147 chr9 80442038 80442106 -43634066 - L2a LINE L2 0 3426 3367 6 1198 1006 293 89 15 chr9 80442113 80443033 -43633139 + L1M2 LINE L1 4778 5776 -524 6 1198 270 0 0 0 chr9 80443275 80443305 -43632867 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1198 450 0 0 0 chr9 80443305 80443354 -43632818 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1198 383 296 34 27 chr9 80444861 80445010 -43631162 - MLT1B LTR MaLR -213 177 28 6 1198 595 332 65 30 chr9 80445216 80445432 -43630740 - L1_Rod LINE L1 0 5847 5627 6 1198 420 20 0 0 chr9 80445432 80445481 -43630691 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1198 595 332 65 30 chr9 80445481 80445755 -43630417 - L1_Rod LINE L1 -221 5626 5340 6 1198 564 64 0 11 chr9 80446075 80446170 -43630002 - L1_Mus4 LINE L1 -3 6633 6540 6 1198 37 0 0 0 chr9 80446192 80446229 -43629943 + AT_rich Low_complexity Low_complexity 1 37 0 6 1198 2239 224 68 15 chr9 80446300 80447330 -43628842 + L1_Mur3 LINE L1 489 1573 -4307 6 1198 650 237 68 50 chr9 80447341 80447563 -43628609 + Lx7 LINE L1 7204 7429 -267 6 1198 1509 187 62 66 chr9 80448121 80448526 -43627646 - RMER16 LTR ERVK 0 533 1 6 1198 430 121 0 35 chr9 80450315 80450401 -43625771 + CT-rich Low_complexity Low_complexity 3 85 0 6 1198 3552 98 94 2 chr9 80450413 80450932 -43625240 + RMER2 LTR ERV1 1 567 0 6 1198 539 180 70 8 chr9 80450934 80451063 -43625109 + RMER1C Other Other 1206 1342 0 6 1198 226 122 38 75 chr9 80451065 80451145 -43625027 + A-rich Low_complexity Low_complexity 3 79 0 6 1198 191 312 86 12 chr9 80452538 80452619 -43623553 + MIRb SINE MIR 122 208 -60 6 1198 1355 289 112 22 chr9 80453660 80454812 -43621360 - L1MA5 LINE L1 -26 6274 5009 6 1198 783 21 0 0 chr9 80455665 80455758 -43620414 + (CAA)n Simple_repeat Simple_repeat 2 94 0 6 1198 241 61 0 0 chr9 80456102 80456135 -43620037 - B1_Mus2 SINE Alu -113 34 2 6 1198 262 234 139 25 chr9 80456575 80456654 -43619518 + B4 SINE B4 1 88 -204 6 1198 1162 69 0 7 chr9 80456664 80456810 -43619362 + B1_Mus2 SINE Alu 3 147 0 6 1198 276 127 0 0 chr9 80456810 80456865 -43619307 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 6 1198 398 211 0 9 chr9 80456933 80457043 -43619129 + (TA)n Simple_repeat Simple_repeat 2 110 0 6 1198 260 26 0 71 chr9 80457043 80457085 -43619087 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1198 27 29 0 0 chr9 80457833 80457867 -43618305 + AT_rich Low_complexity Low_complexity 1 34 0 6 1198 380 292 79 17 chr9 80458377 80458617 -43617555 - L1MC3 LINE L1 -119 7666 7412 6 1198 893 309 82 8 chr9 80458983 80459470 -43616702 - L1MC3 LINE L1 -380 7405 6883 6 1198 482 232 206 12 chr9 80459562 80459732 -43616440 - B3 SINE B2 -13 203 1 6 1198 248 139 23 0 chr9 80459745 80459788 -43616384 - L1MC3 LINE L1 -1310 6475 6432 6 1198 1032 57 0 34 chr9 80459847 80459993 -43616179 - L1_Mus1 LINE L1 -2 6565 6425 6 1198 1888 205 157 2 chr9 80460220 80460704 -43615468 - Lx2B LINE L1 -10 6990 6432 6 1198 2569 172 58 126 chr9 80460704 80461515 -43614657 + Lx2B LINE L1 5652 6407 -593 6 1198 226 333 15 15 chr9 80461521 80461588 -43614584 - MER20 DNA MER1_type -130 89 23 6 1198 332 274 38 55 chr9 80461601 80461834 -43614338 - L1M2 LINE L1 -3034 3811 3573 6 1198 318 272 28 35 chr9 80461928 80462069 -43614103 - L1_Mur3 LINE L1 -3071 2809 2670 6 1198 510 17 0 0 chr9 80462086 80462145 -43614027 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1198 709 287 30 0 chr9 80462148 80462315 -43613857 - B3A SINE B2 -26 172 1 6 1198 316 370 16 25 chr9 80462330 80462452 -43613720 - ID_B1 SINE B4 -11 213 93 6 1198 1859 213 37 13 chr9 80462806 80463182 -43612990 + ORR1B1 LTR MaLR 10 394 0 6 1198 228 264 85 8 chr9 80463216 80463346 -43612826 - L1M2 LINE L1 -5063 1786 1647 6 1198 818 177 150 8 chr9 80463415 80463649 -43612523 - Lx9 LINE L1 0 7644 7378 6 1198 826 130 12 99 chr9 80463649 80463820 -43612352 + RLTR6_Mm LTR ERV1 1 156 -498 6 1198 550 199 223 35 chr9 80463833 80464093 -43612079 + RLTR6_Mm LTR ERV1 276 584 -70 6 1198 1078 188 9 22 chr9 80464093 80464321 -43611851 - Lx9 LINE L1 -263 7381 7157 6 1198 1260 214 62 62 chr9 80465188 80465497 -43610675 - ORR1C2 LTR MaLR 0 384 76 6 1198 4081 217 137 22 chr9 80465497 80466971 -43609201 - Lx6 LINE L1 -16 7444 5794 6 1198 492 18 0 0 chr9 80466971 80467028 -43609144 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1198 4081 206 141 26 chr9 80467028 80467083 -43609089 - Lx6 LINE L1 -1667 5793 5716 6 1198 354 281 31 20 chr9 80467085 80467192 -43608980 - ORR1C2 LTR MaLR -259 100 1 6 1198 399 345 62 38 chr9 80468422 80468792 -43607380 - L2 LINE L2 -658 2761 2383 6 1198 190 273 0 0 chr9 80469534 80469578 -43606594 - L3 LINE CR1 -554 3935 3892 6 1198 236 390 32 0 chr9 80470133 80470256 -43605916 + MIRb SINE MIR 57 183 -85 6 1198 247 358 7 0 chr9 80470463 80470600 -43605572 + L1M4 LINE L1 5457 5594 -580 6 1198 1298 273 104 38 chr9 80471524 80471808 -43604364 + Lx8 LINE L1 6860 7156 -317 6 1198 717 12 0 0 chr9 80471808 80471890 -43604282 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 1198 1298 273 104 38 chr9 80471890 80472161 -43604011 + Lx8 LINE L1 7157 7451 -22 6 1198 450 0 0 0 chr9 80472355 80472405 -43603767 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1198 230 276 164 45 chr9 80472405 80472515 -43603657 - B3 SINE B2 -93 123 1 6 1198 632 168 145 0 chr9 80472656 80472787 -43603385 - B1_Mur4 SINE Alu 0 150 1 6 1198 369 0 0 0 chr9 80473625 80473666 -43602506 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1198 654 185 0 0 chr9 80473666 80473796 -43602376 + (TA)n Simple_repeat Simple_repeat 2 131 0 6 1198 25 51 0 0 chr9 80474147 80474186 -43601986 + AT_rich Low_complexity Low_complexity 1 39 0 6 1198 195 365 122 0 chr9 80474939 80475013 -43601159 - L2a LINE L2 -44 3382 3300 6 1198 255 284 130 17 chr9 80475020 80475145 -43601027 + LTR85a LTR Gypsy? 281 470 -314 6 1198 225 286 0 109 chr9 80476437 80476547 -43599625 + MER5A DNA MER1_type 58 155 -34 6 1198 1078 272 59 5 chr9 80476607 80476936 -43599236 - MLT1A0 LTR MaLR -3 405 22 6 1198 1315 287 87 28 chr9 80477361 80477861 -43598311 + L1MC1 LINE L1 5368 5870 -463 6 149 3252 55 10 2 chr9 80477861 80478277 -43597895 - BGLII LTR ERVK -2 419 1 6 1199 1315 287 87 28 chr9 80478277 80478486 -43597686 + L1MC1 LINE L1 5871 6118 -215 6 1199 595 66 0 0 chr9 80478503 80478579 -43597593 - B2_Mm2 SINE B2 -118 77 2 6 1199 13238 33 1 0 chr9 80478601 80480967 -43595205 - L1Md_T LINE L1 0 6582 4214 6 1199 3291 25 20 0 chr9 80480966 80481372 -43594800 - L1Md_F2 LINE L1 -574 6008 5595 6 1199 2201 77 3 0 chr9 80481372 80481685 -43594487 + L1_Mm LINE L1 4580 4893 -990 6 1199 35382 33 4 8 chr9 80482229 80487625 -43588547 + L1Md_T LINE L1 215 5586 -297 6 1199 8315 36 1 1 chr9 80487625 80488621 -43587551 + L1Md_T LINE L1 5587 6582 0 6 1199 687 25 0 0 chr9 80489139 80489220 -43586952 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1199 980 234 9 14 chr9 80490140 80490357 -43585815 + MTD LTR MaLR 1 216 -203 6 1199 290 307 131 146 chr9 80490610 80490877 -43585295 - RMER20B LTR ERVK -29 598 336 6 1199 312 203 28 28 chr9 80490872 80490943 -43585229 - RMER20A LTR ERVK -444 72 2 6 1199 873 235 15 20 chr9 80490945 80491145 -43585027 + MTD LTR MaLR 209 407 -12 6 1199 252 111 0 0 chr9 80491643 80491679 -43584493 - ID_B1 SINE B4 -2 222 187 6 1199 732 259 111 0 chr9 80492928 80493117 -43583055 - B3 SINE B2 -5 211 2 6 1199 198 0 0 0 chr9 80494823 80494845 -43581327 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1199 25 0 0 0 chr9 80494866 80494891 -43581281 + AT_rich Low_complexity Low_complexity 1 25 0 6 1199 624 212 132 36 chr9 80494900 80495066 -43581106 - B3A SINE B2 -16 182 1 6 1199 23 0 0 0 chr9 80495073 80495096 -43581076 + AT_rich Low_complexity Low_complexity 1 23 0 6 1199 460 341 16 0 chr9 80495468 80495591 -43580581 - ID_B1 SINE B4 -66 158 34 6 1199 333 279 102 64 chr9 80495613 80495770 -43580402 - RSINE1 SINE B4 0 165 3 6 1199 21 0 0 0 chr9 80495775 80495796 -43580376 + AT_rich Low_complexity Low_complexity 1 21 0 6 1199 475 241 125 21 chr9 80495811 80495955 -43580217 - RSINE1 SINE B4 -2 163 5 7 1199 1563 185 127 18 chr9 80496800 80497130 -43579042 + ORR1D1 LTR MaLR 1 366 -8 7 1199 23 0 0 0 chr9 80497198 80497221 -43578951 + AT_rich Low_complexity Low_complexity 1 23 0 7 1199 32 0 0 0 chr9 80497238 80497270 -43578902 + AT_rich Low_complexity Low_complexity 1 32 0 7 1199 2056 310 62 22 chr9 80497422 80498312 -43577860 - Lx8 LINE L1 -96 7377 6453 7 1199 1190 305 48 9 chr9 80498432 80498852 -43577320 - Lx9 LINE L1 -773 6871 6436 7 1199 396 118 0 0 chr9 80498916 80498984 -43577188 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1199 527 0 16 0 chr9 80498989 80499052 -43577120 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 7 1199 249 180 0 0 chr9 80499079 80499129 -43577043 + (CATA)n Simple_repeat Simple_repeat 3 52 0 7 1199 330 217 0 134 chr9 80499134 80499320 -43576852 + Lx9 LINE L1 7457 7617 -27 7 1199 261 0 0 0 chr9 80499627 80499659 -43576513 - L1_Mm LINE L1 -4323 1560 1529 7 1199 2721 38 0 3 chr9 80499658 80500000 -43576172 + L1Md_T LINE L1 5873 6213 -369 7 1199 3164 24 0 0 chr9 80500000 80500369 -43575803 + L1Md_A LINE L1 6214 6582 0 1 1199 234 191 12 161 chr9 80500399 80500480 -43575692 - LTR48B LTR ERV1 -379 265 197 2 1199 335 365 39 74 chr9 80501056 80501287 -43574885 + ID_B1 SINE B4 1 223 -1 3 1199 238 287 11 11 chr9 80501435 80501530 -43574642 + L1MA6 LINE L1 6020 6114 -186 4 1199 203 162 0 26 chr9 80502597 80502635 -43573537 + (CAG)n Simple_repeat Simple_repeat 2 38 0 5 1199 369 43 0 0 chr9 80502637 80502684 -43573488 + (CCA)n Simple_repeat Simple_repeat 1 47 0 6 1199 340 247 11 33 chr9 80503184 80503276 -43572896 + MLT1A1 LTR MaLR 260 349 -59 7 1199 342 115 0 0 chr9 80503316 80503368 -43572804 + (TA)n Simple_repeat Simple_repeat 1 52 0 8 1199 250 98 39 0 chr9 80503397 80503448 -43572724 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 9 1199 32 0 0 0 chr9 80504482 80504514 -43571658 + AT_rich Low_complexity Low_complexity 1 32 0 1 1199 2265 76 50 55 chr9 80505101 80505463 -43570709 + L1Md_F2 LINE L1 6218 6577 -5 1 1199 394 267 37 7 chr9 80505599 80505735 -43570437 + L1M3 LINE L1 4834 4973 -1167 1 1199 262 304 87 24 chr9 80505798 80506051 -43570121 + L1M3 LINE L1 5067 5335 -805 1 1199 569 167 0 19 chr9 80506056 80506160 -43570012 + RMER6-int LTR ERVK 2653 2754 -423 1 1199 8122 144 37 3 chr9 80506164 80507506 -43568666 + RMER6-int LTR ERVK 1 1388 -1789 1 1199 940 88 0 22 chr9 80507520 80507659 -43568513 + RMER6C LTR ERVK 555 690 0 1 1199 613 322 124 3 chr9 80507713 80508093 -43568079 + L1M3 LINE L1 5306 5731 -437 1 1199 1317 255 18 39 chr9 80508426 80508813 -43567359 + MTE2b LTR MaLR 1 379 0 1 1199 275 0 0 28 chr9 80509492 80509528 -43566644 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1199 260 312 69 94 chr9 80509788 80509947 -43566225 - ORR1D2 LTR MaLR -200 170 16 1 1199 4583 197 56 7 chr9 80510149 80511024 -43565148 - Lx5 LINE L1 -8 7042 6125 1 1199 753 259 22 18 chr9 80511015 80511239 -43564933 + Lx5 LINE L1 5884 6108 -942 1 1199 843 241 83 43 chr9 80511251 80511529 -43564643 + B4A SINE B4 2 290 -2 1 1199 458 75 15 0 chr9 80511530 80511597 -43564575 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1199 21 0 0 0 chr9 80513038 80513059 -43563113 + AT_rich Low_complexity Low_complexity 1 21 0 2 1199 212 186 0 23 chr9 80513089 80513133 -43563039 + CT-rich Low_complexity Low_complexity 4 46 0 2 1199 197 392 13 0 chr9 80514319 80514398 -43561774 - MIRc SINE MIR -42 226 147 2 1199 1308 72 0 68 chr9 80515388 80515595 -43560577 + B2_Mm2 SINE B2 3 195 0 2 1199 195 139 0 0 chr9 80515634 80515670 -43560502 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1199 2451 321 73 26 chr9 80516119 80517393 -43558779 - Lx8 LINE L1 -60 7413 6080 2 1199 309 183 0 32 chr9 80517543 80517605 -43558567 - HAL1-3A_ME LINE L1 -831 2027 1968 2 1199 552 214 0 0 chr9 80517605 80517778 -43558394 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 1199 620 241 8 8 chr9 80519049 80519183 -43556989 - Lx6 LINE L1 -1043 6417 6284 2 1199 3100 160 26 23 chr9 80519185 80519823 -43556349 - Lx8 LINE L1 -1081 5969 5329 2 1199 5220 213 34 8 chr9 80519818 80520825 -43555347 + Lx6 LINE L1 6411 7443 -17 3 1199 3013 49 23 8 chr9 80521194 80521584 -43554588 + L1Md_F3 LINE L1 6189 6584 0 3 1199 329 296 51 70 chr9 80521693 80521907 -43554265 + L1MA8 LINE L1 5877 6086 -205 3 1199 1139 86 55 39 chr9 80523690 80523871 -43552301 - B2_Mm2 SINE B2 -11 184 1 3 1199 1976 270 71 11 chr9 80524057 80524607 -43551565 - Lx6 LINE L1 -26 7434 6852 3 1199 1077 330 61 16 chr9 80524596 80525089 -43551083 - Lx8 LINE L1 -132 7341 6827 3 1199 7525 81 9 1 chr9 80527919 80529476 -43546696 + L1_Mus2 LINE L1 4992 6566 0 3 1199 189 107 0 0 chr9 80529691 80529719 -43546453 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1199 653 364 128 66 chr9 80530025 80530540 -43545632 + MLT1F2 LTR MaLR 2 560 0 3 1199 3406 141 76 43 chr9 80530904 80531572 -43544600 + RMER6C LTR ERVK 1 690 0 3 1199 1233 205 30 49 chr9 80531784 80531826 -43544346 - ORR1D1 LTR MaLR 0 374 344 4 1199 345 100 0 0 chr9 80531826 80531876 -43544296 + (ATG)n Simple_repeat Simple_repeat 2 51 0 4 1199 1233 220 33 53 chr9 80531876 80532136 -43544036 - ORR1D1 LTR MaLR -31 343 33 4 1199 738 280 54 4 chr9 80533061 80533301 -43542871 + L1MA8 LINE L1 5540 5791 -521 4 1199 329 264 32 32 chr9 80533647 80533772 -43542400 + L1MA8 LINE L1 6157 6281 -10 4 1199 267 395 33 16 chr9 80535102 80535223 -43540949 + MER45A DNA Tip100 13 135 -43 4 1199 202 264 65 0 chr9 80535477 80535564 -43540608 - MIR SINE MIR -91 177 76 4 1199 302 265 29 0 chr9 80535881 80535983 -43540189 + L1MA8 LINE L1 6177 6281 -10 4 1199 468 0 0 0 chr9 80536065 80536117 -43540055 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1199 21 36 0 0 chr9 80537014 80537042 -43539130 + AT_rich Low_complexity Low_complexity 1 28 0 4 1199 212 292 187 46 chr9 80537199 80537461 -43538711 + L2 LINE L2 2290 2588 -831 4 1199 810 179 8 0 chr9 80537537 80537671 -43538501 - RLTR25B LTR ERVK 0 1103 969 4 1199 3151 176 82 88 chr9 80537641 80537678 -43538494 - RLTR25B LTR ERVK -202 826 787 4 1199 546 57 0 0 chr9 80537678 80537748 -43538424 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1199 3151 176 82 88 chr9 80537748 80538471 -43537701 - RLTR25B LTR ERVK -242 786 71 4 1199 234 309 15 0 chr9 80539951 80540019 -43536153 - L2a LINE L2 -18 3408 3340 5 1199 27 0 0 0 chr9 80540229 80540256 -43535916 + AT_rich Low_complexity Low_complexity 1 27 0 5 1199 1695 182 21 30 chr9 80540964 80541328 -43534844 - RMER16 LTR ERVK 0 533 1 5 1199 204 339 25 57 chr9 80541433 80541555 -43534617 - MIR SINE MIR -30 232 115 5 1199 427 295 193 7 chr9 80541755 80541905 -43534267 - B3A SINE B2 -16 182 5 5 1199 472 341 6 18 chr9 80542074 80542241 -43533931 - RSINE1 SINE B4 0 165 1 5 1199 495 0 0 0 chr9 80543327 80543382 -43532790 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1199 390 258 44 133 chr9 80543474 80543693 -43532479 - MTEb LTR MaLR -3 376 151 5 1199 470 279 9 9 chr9 80543703 80543815 -43532357 - B3 SINE B2 -68 148 37 5 1199 4626 170 21 46 chr9 80543815 80544690 -43531482 + RLTR25A LTR ERVK 1 853 -250 6 1199 318 143 18 18 chr9 80544716 80544773 -43531399 + RLTR25A LTR ERVK 1047 1103 0 6 1199 232 170 64 0 chr9 80544773 80544813 -43531359 - B3 SINE B2 -173 43 1 6 1199 657 304 43 16 chr9 80544813 80545117 -43531055 - L1MB4 LINE L1 -350 5830 5519 6 1199 274 250 29 14 chr9 80545258 80545396 -43530776 - Lx9 LINE L1 -86 7558 7419 6 1199 934 219 36 16 chr9 80545365 80545616 -43530556 - Lx9 LINE L1 -127 7517 7262 6 1199 258 306 12 0 chr9 80545626 80545711 -43530461 - L1MB4 LINE L1 -703 5480 5395 6 1199 311 365 39 0 chr9 80547655 80547759 -43528413 - PB1D10 SINE Alu -7 110 3 6 1199 234 0 0 0 chr9 80548618 80548644 -43527528 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 1199 618 51 0 0 chr9 80548996 80549074 -43527098 + (TC)n Simple_repeat Simple_repeat 2 79 0 6 1199 530 293 40 35 chr9 80549145 80549318 -43526854 - B3 SINE B2 -8 208 35 6 1199 1597 58 64 47 chr9 80549599 80549762 -43526410 + MTB LTR MaLR 1 175 -225 6 1199 970 111 25 0 chr9 80549762 80549924 -43526248 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 6 1199 1597 58 64 47 chr9 80549924 80549996 -43526176 + MTB LTR MaLR 176 240 -160 6 1199 562 172 0 24 chr9 80550011 80550136 -43526036 + CT-rich Low_complexity Low_complexity 3 124 0 7 1199 1864 47 4 0 chr9 80550136 80550368 -43525804 + MTB LTR MaLR 168 400 0 7 1199 359 161 73 12 chr9 80550398 80550480 -43525692 + L1MA7 LINE L1 6097 6183 -108 7 1199 414 0 0 0 chr9 80550495 80550541 -43525631 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 7 1199 3310 45 0 2 chr9 80551836 80552233 -43523939 - MTA_Mm LTR MaLR 0 396 1 7 1199 559 327 6 0 chr9 80552551 80552713 -43523459 + RSINE1 SINE B4 3 165 0 7 1199 331 246 101 0 chr9 80552939 80553008 -43523164 - RMER15 LTR ERVL 0 575 500 7 1199 2066 130 26 6 chr9 80553020 80553361 -43522811 + RLTR15 LTR ERVK 6 353 -6 7 1199 1230 182 9 5 chr9 80553352 80553567 -43522605 - RMER15 LTR ERVL -74 501 286 7 1199 533 178 0 48 chr9 80553564 80553601 -43522571 + URR1B DNA MER1_type 108 144 -81 7 1199 4449 70 0 2 chr9 80553601 80554177 -43521995 + L1Md_F2 LINE L1 5996 6570 -12 7 1199 533 178 0 48 chr9 80554177 80554263 -43521909 + URR1B DNA MER1_type 145 225 0 7 1199 28 0 0 0 chr9 80554298 80554326 -43521846 + AT_rich Low_complexity Low_complexity 1 28 0 8 1199 37042 25 1 6 chr9 80554359 80560323 -43515849 - L1Md_T LINE L1 0 6582 659 8 1199 228 167 0 0 chr9 80560780 80560828 -43515344 - L1M5 LINE L1 -2255 3891 3844 8 1199 1209 106 21 16 chr9 80561129 80561320 -43514852 + B2_Mm2 SINE B2 2 193 -2 8 1199 207 0 0 0 chr9 80561610 80561633 -43514539 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1199 492 18 0 0 chr9 80562964 80563021 -43513151 + (TTA)n Simple_repeat Simple_repeat 3 59 0 8 1199 189 258 42 83 chr9 80563205 80563277 -43512895 - L2 LINE L2 -979 2440 2372 8 1199 233 241 16 49 chr9 80564244 80564305 -43511867 + RMER15 LTR ERVL 336 394 -181 8 1199 1358 172 71 4 chr9 80564311 80564580 -43511592 - Lx3C LINE L1 0 6976 6690 8 1199 516 284 6 72 chr9 80564989 80565156 -43511016 + RMER15 LTR ERVL 419 574 -1 8 1199 348 212 14 7 chr9 80566691 80566829 -43509343 + (TG)n Simple_repeat Simple_repeat 2 140 0 8 1199 23 0 0 0 chr9 80567225 80567248 -43508924 + AT_rich Low_complexity Low_complexity 1 23 0 9 1199 313 345 0 26 chr9 80567334 80567450 -43508722 - Lx8 LINE L1 -196 7277 7165 9 1199 905 326 61 95 chr9 80567836 80568096 -43508076 + Lx5 LINE L1 6322 6540 -510 9 1199 369 0 0 0 chr9 80568096 80568137 -43508035 + (GA)n Simple_repeat Simple_repeat 1 41 0 9 1199 2174 250 63 2 chr9 80568137 80568646 -43507526 + Lx6 LINE L1 6913 7452 -8 9 1199 2203 293 75 23 chr9 80568816 80569648 -43506524 - Lx8 LINE L1 -414 7059 6185 9 1199 1304 119 16 0 chr9 80570026 80570211 -43505961 - B2_Mm2 SINE B2 -7 188 1 9 1199 4698 32 2 12 chr9 80570346 80570921 -43505251 + L1Md_F2 LINE L1 6013 6581 -1 9 1199 1236 270 55 39 chr9 80571026 80571407 -43504765 + L1MA4 LINE L1 4665 5038 -1105 9 1199 234 0 0 0 chr9 80571407 80571433 -43504739 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1199 1236 273 225 21 chr9 80571433 80571991 -43504181 + L1MA4 LINE L1 5008 5743 -137 9 1199 348 24 0 0 chr9 80571991 80572032 -43504140 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1199 1236 277 189 21 chr9 80572032 80572173 -43503999 + L1MA4 LINE L1 5744 5926 -374 9 1199 21 0 0 0 chr9 80573351 80573372 -43502800 + AT_rich Low_complexity Low_complexity 1 21 0 1 1199 1314 292 12 44 chr9 80573461 80573873 -43502299 - Lx9 LINE L1 -453 7191 6793 1 1199 875 314 77 79 chr9 80573984 80574502 -43501670 + LTR40a LTR ERVL 3 519 0 1 1199 257 236 0 0 chr9 80574502 80574552 -43501620 + Helitron1Na_Mam RC Helitron 265 314 -748 1 1199 315 295 37 15 chr9 80574566 80574700 -43501472 + Helitron1Na_Mam RC Helitron 816 952 -110 1 1199 333 301 118 113 chr9 80575295 80575685 -43500487 + MLT1A1 LTR MaLR 1 392 -16 1 1199 714 209 0 0 chr9 80576121 80576250 -43499922 - B1_Mur2 SINE Alu 0 149 21 1 1199 446 286 18 55 chr9 80576250 80576284 -43499888 - ID_B1 SINE B4 0 224 68 1 1199 192 300 71 0 chr9 80576293 80576363 -43499809 + MIR SINE MIR 109 183 -79 1 1199 23 68 0 0 chr9 80576545 80576589 -43499583 + AT_rich Low_complexity Low_complexity 1 44 0 1 1199 221 262 32 32 chr9 80577823 80577886 -43498286 + ID4_ SINE ID 1 63 -20 1 1199 233 170 0 36 chr9 80578606 80578661 -43497511 + CT-rich Low_complexity Low_complexity 3 55 0 1 1199 395 83 0 16 chr9 80578968 80579029 -43497143 + (TTA)n Simple_repeat Simple_repeat 1 60 0 1 1199 1243 34 0 0 chr9 80579030 80579177 -43496995 - B1_Mus1 SINE Alu -1 147 1 1 1199 245 298 198 6 chr9 80579724 80579906 -43496266 - Charlie7 DNA MER1_type -257 2355 2139 1 1199 4683 83 10 2 chr9 80579952 80580576 -43495596 + Lx3_Mus LINE L1 6374 7002 -7 1 1199 189 0 0 0 chr9 80580576 80580597 -43495575 + (TTTAA)n Simple_repeat Simple_repeat 2 22 0 1 1199 23 54 0 0 chr9 80580925 80580962 -43495210 + AT_rich Low_complexity Low_complexity 1 37 0 1 1199 408 55 0 0 chr9 80581258 80581313 -43494859 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1 1199 210 71 0 0 chr9 80582683 80582711 -43493461 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1199 3495 191 28 44 chr9 80583266 80583973 -43492199 - Lx5 LINE L1 -3 7047 6352 1 1199 4061 129 11 11 chr9 80583968 80584445 -43491727 - L1_Mur2 LINE L1 -166 5711 5238 1 1199 849 26 26 0 chr9 80584445 80584561 -43491611 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 1 1199 4061 129 11 11 chr9 80584561 80584750 -43491422 - L1_Mur2 LINE L1 -640 5237 5046 1 1199 283 306 182 0 chr9 80585376 80585497 -43490675 - L2a LINE L2 -2 3424 3282 1 1199 396 0 0 0 chr9 80585576 80585620 -43490552 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1199 497 251 68 68 chr9 80585895 80586087 -43490085 + L1M5 LINE L1 2676 2877 -3269 1 1199 1015 96 0 0 chr9 80586087 80586222 -43489950 + B1_Mus1 SINE Alu 2 136 -12 1 1199 225 0 0 0 chr9 80586222 80586247 -43489925 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1199 497 251 68 68 chr9 80586247 80586305 -43489867 + L1M5 LINE L1 2878 2926 -3220 1 1199 411 319 40 64 chr9 80586307 80586453 -43489719 + L1M5 LINE L1 3225 3361 -2785 1 1199 180 0 0 0 chr9 80586453 80586473 -43489699 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1 1199 411 319 40 64 chr9 80586473 80586624 -43489548 + L1M5 LINE L1 3362 3515 -2631 1 1199 476 181 29 0 chr9 80586687 80586792 -43489380 - Lx9 LINE L1 -2 7642 7535 1 1199 259 25 50 0 chr9 80586799 80586839 -43489333 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1199 1522 204 64 36 chr9 80586841 80587232 -43488940 - Lx9 LINE L1 -179 7465 7064 1 1199 378 0 0 0 chr9 80587232 80587274 -43488898 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1199 1556 257 53 12 chr9 80587360 80587856 -43488316 + Lx7 LINE L1 6541 7091 -605 1 1199 339 238 0 16 chr9 80589972 80590036 -43486136 + U4 snRNA snRNA 1 63 -82 1 1199 21 0 0 0 chr9 80590041 80590062 -43486110 + AT_rich Low_complexity Low_complexity 1 21 0 1 1199 325 261 54 11 chr9 80590968 80591061 -43485111 + B1F1 SINE Alu 1 97 -52 1 1199 189 0 0 0 chr9 80591396 80591417 -43484755 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1199 311 314 233 19 chr9 80591487 80591967 -43484205 + L1MA9 LINE L1 1183 1765 -4477 1 1199 2589 57 36 3 chr9 80592434 80592769 -43483403 - ORR1A0 LTR MaLR 0 346 1 1 1199 180 0 0 0 chr9 80593394 80593414 -43482758 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1199 640 292 117 75 chr9 80593450 80594050 -43482122 - L1M3 LINE L1 -3238 2902 2278 1 1199 556 65 32 0 chr9 80594056 80594149 -43482023 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1 1199 1753 322 49 96 chr9 80594174 80595058 -43481114 - Lx5 LINE L1 -28 7022 6181 1 1199 1004 300 86 22 chr9 80595192 80596206 -43479966 + L1MA9 LINE L1 4673 5748 -564 1 1199 345 330 0 9 chr9 80596218 80596325 -43479847 + PB1D10 SINE Alu 10 115 -2 1 1199 709 301 55 21 chr9 80596349 80596733 -43479439 + L1MA9 LINE L1 5765 6161 -151 1 1199 2140 156 131 47 chr9 80597500 80597972 -43478200 + RMER1C Other Other 821 1332 -10 1 1199 523 195 0 0 chr9 80598104 80598222 -43477950 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1199 1089 80 0 0 chr9 80598223 80598385 -43477787 + (CTGGGG)n Simple_repeat Simple_repeat 1 162 0 1 1199 721 333 61 15 chr9 80598816 80599142 -43477030 + Lx7 LINE L1 6833 7173 -523 1 1199 24 91 0 0 chr9 80599309 80599375 -43476797 + AT_rich Low_complexity Low_complexity 1 66 0 1 1199 595 138 57 0 chr9 80599386 80599509 -43476663 - L1_Mus3 LINE L1 -8 6630 6501 1 1199 1475 107 5 0 chr9 80599509 80599715 -43476457 + L1_Mus3 LINE L1 6262 6468 -170 1 1199 3923 192 45 91 chr9 80599715 80600660 -43475512 - RMER19B LTR ERVK 0 902 1 1 1199 272 279 109 43 chr9 80600850 80601188 -43474984 + L1M5 LINE L1 3695 4054 -2092 1 1199 299 315 39 8 chr9 80601420 80601548 -43474624 + L1M5 LINE L1 4567 4698 -1448 1 1199 498 46 0 0 chr9 80601772 80601837 -43474335 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1199 745 318 52 28 chr9 80601857 80602106 -43474066 - B4 SINE B4 -20 272 18 1 1199 794 301 74 7 chr9 80602173 80602592 -43473580 + L1M5 LINE L1 5000 5448 -792 1 1199 232 308 152 36 chr9 80603503 80603668 -43472504 - MIRb SINE MIR -51 217 34 1 1199 474 18 0 0 chr9 80604479 80604534 -43471638 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1199 200 279 11 23 chr9 80605311 80605399 -43470773 + GA-rich Low_complexity Low_complexity 2 88 0 1 1199 486 61 0 0 chr9 80605506 80605572 -43470600 + (CATA)n Simple_repeat Simple_repeat 3 68 0 1 1199 188 358 24 24 chr9 80606412 80606495 -43469677 + MER5A DNA MER1_type 40 122 -67 1 1199 773 271 98 79 chr9 80607025 80607454 -43468718 + RLTR12B LTR ERVK 47 483 -45 1 1199 233 304 0 0 chr9 80607759 80607828 -43468344 + Lx9 LINE L1 7386 7454 -190 1 1199 327 104 0 0 chr9 80607829 80607877 -43468295 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1199 307 214 102 0 chr9 80607899 80607997 -43468175 + Lx9 LINE L1 7533 7640 -4 1 1199 6683 103 9 5 chr9 80608263 80609248 -43466924 + ORR1A2-int LTR MaLR 975 1963 0 1 149 1834 107 104 0 chr9 80609248 80609537 -43466635 + ORR1A2 LTR MaLR 1 319 -8 1 1200 490 304 127 24 chr9 80610454 80610476 -43465696 - B3A SINE B2 -15 183 165 1 1200 303 49 0 0 chr9 80610476 80610517 -43465655 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1200 490 304 127 24 chr9 80610517 80610659 -43465513 - B3A SINE B2 -34 164 2 1 1200 618 14 0 0 chr9 80610690 80610761 -43465411 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1 1200 525 248 17 123 chr9 80610770 80610949 -43465223 - RSINE1 SINE B4 0 165 6 1 1200 879 10 0 0 chr9 80614104 80614204 -43461968 + (TTC)n Simple_repeat Simple_repeat 3 102 0 1 1200 465 305 11 68 chr9 80614357 80614533 -43461639 + ID_B1 SINE B4 57 222 -2 1 1200 14627 4 0 0 chr9 80614693 80616335 -43459837 + L1Md_A LINE L1 3945 5586 -297 1 1200 9021 2 0 0 chr9 80616335 80617330 -43458842 + L1Md_A LINE L1 5587 6581 -1 1 1200 354 45 0 0 chr9 80619657 80619701 -43456471 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1200 835 134 11 23 chr9 80620496 80620671 -43455501 + Lx LINE L1 6477 6649 -5 1 1200 594 41 0 0 chr9 80621072 80621145 -43455027 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 1 1200 699 228 52 0 chr9 80621146 80621282 -43454890 - B1_Mur3 SINE Alu -6 143 1 1 1200 292 371 104 24 chr9 80621455 80621742 -43454430 + MLT1J LTR MaLR 3 312 -200 1 1200 22 35 0 0 chr9 80622716 80622745 -43453427 + AT_rich Low_complexity Low_complexity 1 29 0 1 1200 21 0 0 0 chr9 80622775 80622796 -43453376 + AT_rich Low_complexity Low_complexity 1 21 0 1 1200 13118 18 7 0 chr9 80622890 80624416 -43451756 + L1Md_T LINE L1 4050 5586 -297 1 1200 8411 32 1 0 chr9 80624416 80625478 -43450694 + L1Md_T LINE L1 5587 6582 0 1 1200 304 289 0 22 chr9 80627156 80627248 -43448924 + GA-rich Low_complexity Low_complexity 1 90 0 1 1200 1215 67 0 0 chr9 80627776 80627955 -43448217 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 1200 192 77 0 0 chr9 80628376 80628402 -43447770 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1 1200 1174 65 106 0 chr9 80628737 80628907 -43447265 - B2_Mm2 SINE B2 -7 188 1 1 1200 22 0 0 0 chr9 80629142 80629164 -43447008 + AT_rich Low_complexity Low_complexity 1 22 0 1 1200 262 277 11 126 chr9 80629176 80629271 -43446901 - PB1D10 SINE Alu 0 117 34 1 1200 20450 89 11 3 chr9 80629341 80633079 -43443093 + L1Md_F2 LINE L1 238 3992 -1891 1 1200 4391 75 5 2 chr9 80633079 80633668 -43442504 + L1Md_F2 LINE L1 4995 5585 -298 1 1200 7708 54 11 3 chr9 80633669 80634643 -43441529 + L1Md_F2 LINE L1 5587 6568 -14 1 1200 421 345 40 71 chr9 80635185 80635481 -43440691 + B4A SINE B4 6 292 0 1 1200 486 0 0 0 chr9 80635663 80635717 -43440455 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1200 2608 156 163 43 chr9 80635717 80636024 -43440148 + RMER6C LTR ERVK 9 373 -317 1 1200 776 84 8 0 chr9 80636024 80636155 -43440017 + (GA)n Simple_repeat Simple_repeat 2 133 0 1 1200 2608 156 163 43 chr9 80636155 80636456 -43439716 + RMER6C LTR ERVK 374 690 0 1 1200 3912 207 47 18 chr9 80636474 80637552 -43438620 + MurERV4-int LTR ERVK 4179 5154 -106 1 1200 459 0 0 0 chr9 80637574 80637625 -43438547 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1200 243 88 0 0 chr9 80637628 80637662 -43438510 + (GGA)n Simple_repeat Simple_repeat 3 36 0 1 1200 1477 198 71 26 chr9 80637662 80637997 -43438175 + RMER6C LTR ERVK 296 651 -39 1 1200 1089 44 0 0 chr9 80637997 80638132 -43438040 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 1 1200 1477 198 71 26 chr9 80638132 80638148 -43438024 + RMER6C LTR ERVK 652 663 -27 1 1200 1107 189 13 22 chr9 80638656 80638883 -43437289 - URR1A DNA MER1_type 0 226 2 1 1200 231 297 54 68 chr9 80641794 80641942 -43434230 - BGLII_B LTR ERVK -29 412 267 1 1200 309 304 92 13 chr9 80641940 80642046 -43434126 - B1F2 SINE Alu -35 114 1 1 1200 324 186 17 0 chr9 80642052 80642111 -43434061 - ID SINE ID -164 60 1 1 1200 399 303 88 55 chr9 80642128 80642327 -43433845 - B3A SINE B2 -8 208 7 1 1200 599 292 50 9 chr9 80642368 80642689 -43433483 - L1M3 LINE L1 -863 5277 4944 1 1200 233 258 85 92 chr9 80642973 80643114 -43433058 - MLT1A0 LTR MaLR -8 357 218 1 1200 215 290 41 41 chr9 80644562 80644659 -43431513 - PB1D9 SINE Alu -4 116 20 1 1200 460 318 0 58 chr9 80645145 80645298 -43430874 + B1F2 SINE Alu 5 149 0 2 1200 25 0 0 0 chr9 80645657 80645682 -43430490 + AT_rich Low_complexity Low_complexity 1 25 0 2 1200 1140 288 93 21 chr9 80646048 80646205 -43429967 + L1ME3A LINE L1 5505 5671 -569 2 1200 306 0 0 0 chr9 80646205 80646239 -43429933 + (TATG)n Simple_repeat Simple_repeat 4 37 0 2 1200 1140 283 85 16 chr9 80646239 80646553 -43429619 + L1ME3A LINE L1 5672 6011 -162 2 1200 1133 177 9 0 chr9 80647144 80647364 -43428808 - Lx2 LINE L1 -1 6996 6775 2 1200 2264 110 1 1 chr9 80647364 80647703 -43428469 - Lx2 LINE L1 -354 6643 6280 2 1200 456 293 44 61 chr9 80647670 80647899 -43428273 + L1ME3A LINE L1 5727 5951 -222 2 1200 24820 151 14 13 chr9 80647947 80650045 -43426127 - Lx2 LINE L1 -688 6309 4216 2 1200 1103 108 0 0 chr9 80650045 80650193 -43425979 - B1_Mus1 SINE Alu 0 148 1 2 1200 24820 156 21 28 chr9 80650193 80654071 -43422101 - Lx2 LINE L1 -1671 4215 360 2 1200 38 39 0 0 chr9 80655243 80655295 -43420877 + AT_rich Low_complexity Low_complexity 1 52 0 2 1200 292 310 33 33 chr9 80655295 80655415 -43420757 - B3 SINE B2 -5 211 92 2 1200 259 297 9 65 chr9 80655404 80655512 -43420660 - B2_Mm2 SINE B2 -93 102 1 2 1200 199 311 33 0 chr9 80656468 80656558 -43419614 - MIR SINE MIR -64 198 106 2 1200 245 326 61 0 chr9 80656584 80656682 -43419490 + MLT1E LTR MaLR 48 151 -502 2 1200 230 301 17 120 chr9 80656992 80657109 -43419063 - MER5B DNA MER1_type -69 109 5 2 1200 453 19 0 0 chr9 80658218 80658272 -43417900 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1200 342 45 0 0 chr9 80658272 80658316 -43417856 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1200 244 173 0 19 chr9 80659446 80659499 -43416673 - B3 SINE B2 0 216 165 2 1200 474 136 23 57 chr9 80659497 80659594 -43416578 - B2_Mm2 SINE B2 -91 102 1 2 1200 1338 111 16 0 chr9 80659775 80659965 -43416207 + B2_Mm2 SINE B2 1 193 -2 2 1200 477 305 131 6 chr9 80660211 80660386 -43415786 - B3A SINE B2 0 198 2 2 1200 223 223 98 80 chr9 80660538 80660650 -43415522 + BC1_Mm scRNA scRNA 2 115 -37 2 1200 489 76 0 0 chr9 80660812 80660878 -43415294 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 2 1200 417 152 0 0 chr9 80661746 80661851 -43414321 + (TCTCTG)n Simple_repeat Simple_repeat 4 108 0 2 1200 549 0 0 0 chr9 80661858 80661919 -43414253 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1200 258 360 107 23 chr9 80663737 80663990 -43412182 + MIR SINE MIR 2 267 -1 2 1200 2126 56 0 0 chr9 80665720 80665988 -43410184 - L1_Mus2 LINE L1 -554 6012 5745 2 1200 627 220 140 14 chr9 80665988 80666085 -43410087 - RMER6D LTR ERVK -263 457 333 2 1200 218 81 27 0 chr9 80666085 80666122 -43410050 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1200 627 209 281 13 chr9 80666122 80666361 -43409811 - RMER6D LTR ERVK -388 332 1 2 1200 623 259 29 7 chr9 80666749 80666889 -43409283 - MTE2b LTR MaLR -67 312 170 2 1200 200 132 0 26 chr9 80667042 80667081 -43409091 + A-rich Low_complexity Low_complexity 3 40 0 2 1200 378 151 0 0 chr9 80667105 80667178 -43408994 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1200 529 110 0 21 chr9 80667320 80667413 -43408759 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 2 1200 219 36 0 0 chr9 80667413 80667441 -43408731 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 2 1200 2736 190 86 2 chr9 80667462 80668022 -43408150 - Lx7 LINE L1 -368 7328 6722 2 1200 353 64 0 0 chr9 80668747 80668794 -43407378 - Lx2A1 LINE L1 -466 6542 6496 2 1200 452 151 0 0 chr9 80668794 80668887 -43407285 + Lx2A1 LINE L1 6913 7005 -3 2 1200 415 357 45 13 chr9 80668887 80669043 -43407129 - RSINE1 SINE B4 -2 163 3 2 1200 200 211 16 81 chr9 80669276 80669338 -43406834 - L3 LINE CR1 -1101 3388 3331 2 1200 707 33 11 0 chr9 80669966 80670056 -43406116 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 1200 477 0 0 0 chr9 80671426 80671479 -43404693 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1200 246 373 138 25 chr9 80672089 80672573 -43403599 + MamRep605 Unknown Unknown 250 788 -88 2 1200 180 0 0 0 chr9 80673804 80673824 -43402348 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1200 384 138 0 0 chr9 80674253 80674318 -43401854 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1200 207 0 0 0 chr9 80674318 80674341 -43401831 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2 1200 203 95 0 45 chr9 80674554 80674598 -43401574 + (TAAAAA)n Simple_repeat Simple_repeat 6 47 0 2 1200 443 189 8 24 chr9 80674817 80674942 -43401230 + (CATATA)n Simple_repeat Simple_repeat 6 128 0 2 1200 244 280 85 11 chr9 80675016 80675110 -43401062 + Lx8 LINE L1 6870 6970 -503 2 1200 609 211 0 0 chr9 80675113 80675246 -43400926 + (TA)n Simple_repeat Simple_repeat 2 134 0 2 1200 1048 325 82 15 chr9 80675309 80675771 -43400401 - Lx8 LINE L1 -38 7435 6943 2 1200 589 273 352 16 chr9 80675784 80676111 -43400061 - Lx8 LINE L1 -657 6816 6380 2 1200 596 294 129 59 chr9 80676945 80677231 -43398941 + RMER15 LTR ERVL 267 572 -3 2 1200 1195 51 0 0 chr9 80677561 80677719 -43398453 - L1Md_F2 LINE L1 0 6582 6425 2 1200 363 44 0 0 chr9 80678279 80678324 -43397848 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 2 1200 1571 291 31 38 chr9 80678324 80678906 -43397266 - Lx6 LINE L1 0 7460 6503 2 1200 446 250 31 0 chr9 80679319 80679415 -43396757 - B1F SINE Alu -29 120 22 2 1200 379 305 30 5 chr9 80679415 80679438 -43396734 - ID_B1 SINE B4 -26 198 81 2 1200 808 243 35 102 chr9 80679585 80679983 -43396189 - MTEb LTR MaLR -38 332 1 2 1200 27 29 0 0 chr9 80680966 80681000 -43395172 + AT_rich Low_complexity Low_complexity 1 34 0 2 1200 234 224 14 56 chr9 80681341 80681412 -43394760 - ID4_ SINE ID -15 68 1 2 1200 1174 220 107 11 chr9 80682204 80682484 -43393688 - Lx9 LINE L1 -217 7427 7121 2 1200 1969 193 45 108 chr9 80682484 80682526 -43393646 - RMER12 LTR ERVK -522 800 766 2 1200 450 0 0 0 chr9 80682526 80682576 -43393596 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1200 1969 193 45 108 chr9 80682576 80683126 -43393046 - RMER12 LTR ERVK -557 765 245 2 1200 420 192 0 0 chr9 80683653 80683752 -43392420 + (CA)n Simple_repeat Simple_repeat 2 100 0 2 1200 318 340 93 48 chr9 80684080 80684370 -43391802 - HAL1 LINE L1 -706 1801 1499 2 1200 183 42 0 0 chr9 80685694 80685718 -43390454 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1200 363 253 96 20 chr9 80686824 80686967 -43389205 - B4 SINE B4 -67 157 10 2 1200 189 94 0 0 chr9 80687024 80687056 -43389116 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 2 1200 440 266 15 30 chr9 80687085 80687217 -43388955 - B1F SINE Alu -2 147 18 2 1200 252 318 22 11 chr9 80687153 80687242 -43388930 - B4A SINE B4 -125 167 78 2 1200 354 282 171 40 chr9 80687378 80687629 -43388543 - Tigger13a DNA MER2_type -303 468 185 2 1200 22 0 0 0 chr9 80687956 80687978 -43388194 + AT_rich Low_complexity Low_complexity 1 22 0 2 1200 303 175 0 0 chr9 80688966 80689023 -43387149 + CT-rich Low_complexity Low_complexity 3 59 0 2 1200 22 0 0 0 chr9 80689460 80689482 -43386690 + AT_rich Low_complexity Low_complexity 1 22 0 2 1200 2111 194 21 49 chr9 80690108 80690198 -43385974 + MTC LTR MaLR 1 78 -343 2 1200 587 249 9 94 chr9 80690198 80690411 -43385761 + B2_Mm2 SINE B2 1 195 0 2 1200 2111 194 21 49 chr9 80690411 80690748 -43385424 + MTC LTR MaLR 79 416 -5 2 1200 404 52 35 0 chr9 80690912 80690970 -43385202 + (TATG)n Simple_repeat Simple_repeat 2 61 0 2 1200 276 222 0 0 chr9 80691005 80691059 -43385113 - B3A SINE B2 -71 127 74 2 1200 3551 132 5 0 chr9 80691230 80691797 -43384375 + L1_Mm LINE L1 4843 5412 -471 2 1200 273 150 0 0 chr9 80691793 80691833 -43384339 - L1_Mus3 LINE L1 -308 6258 6219 2 1200 2092 90 113 9 chr9 80691833 80692168 -43384004 + L1_Mus3 LINE L1 6268 6637 -1 2 1200 1041 108 0 13 chr9 80692187 80692337 -43383835 + B1_Mus1 SINE Alu 1 148 0 2 1200 482 337 73 35 chr9 80692531 80692817 -43383355 - Arthur1B DNA Tip100 -909 316 20 2 1200 23 0 0 0 chr9 80693657 80693680 -43382492 + AT_rich Low_complexity Low_complexity 1 23 0 2 1200 367 267 54 35 chr9 80694229 80694406 -43381766 + B3 SINE B2 1 216 0 2 1200 1359 212 167 19 chr9 80695464 80695829 -43380343 + MTD LTR MaLR 1 419 0 2 1200 3448 38 28 16 chr9 80695925 80696353 -43379819 + RLTR10C LTR ERVK 1 433 -3 2 1200 1379 64 0 0 chr9 80696355 80696527 -43379645 + MMERVK10C-int LTR ERVK 1 172 -7409 2 1200 234 280 0 0 chr9 80696527 80696577 -43379595 + RLTR27 LTR ERVK 223 272 -37 2 1200 407 22 0 0 chr9 80696577 80696623 -43379549 + MMERVK10C-int LTR ERVK 222 267 -7314 2 1200 260 236 0 47 chr9 80696668 80696797 -43379375 + A-rich Low_complexity Low_complexity 2 124 0 2 1200 355 67 0 0 chr9 80696797 80696842 -43379330 + RLTR10-int LTR ERVK 93 137 -6405 2 1200 1943 17 9 4 chr9 80696845 80697078 -43379094 + RLTR10-int LTR ERVK 652 885 -1102 2 1200 13739 50 1 1 chr9 80697047 80698734 -43377438 + MMERVK10C-int LTR ERVK 3512 5198 -2383 2 1200 954 9 0 0 chr9 80698734 80698844 -43377328 - RLTR10C LTR ERVK -326 110 1 2 1200 471 206 66 2 chr9 80699086 80699232 -43376940 + Lx9 LINE L1 5728 5916 -1728 2 1200 674 281 114 45 chr9 80699242 80699864 -43376308 + Lx9 LINE L1 6965 7629 -15 2 1200 252 0 0 0 chr9 80700061 80700089 -43376083 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1200 328 245 189 0 chr9 80700792 80700898 -43375274 - L2b LINE L2 0 3375 3250 2 1200 357 205 58 33 chr9 80700914 80701035 -43375137 + HAL1-2a_MD LINE L1 2399 2522 -502 2 1200 21 0 0 0 chr9 80701561 80701582 -43374590 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 484 283 125 20 chr9 80703577 80703873 -43372299 - L1MA4 LINE L1 -3 6297 5971 2 1200 258 32 0 0 chr9 80704673 80704704 -43371468 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 1200 660 306 100 22 chr9 80704948 80705349 -43370823 - L1MA4 LINE L1 -475 5825 5394 2 1200 243 281 132 22 chr9 80705601 80705692 -43370480 + Lx8 LINE L1 7144 7244 -229 2 1200 277 180 16 16 chr9 80705702 80705764 -43370408 + RMER15 LTR ERVL 403 464 -111 2 1200 1999 224 5 214 chr9 80706288 80707054 -43369118 + RMER19C LTR ERVK 2 607 -4 2 1200 1538 269 35 50 chr9 80707240 80707874 -43368298 - RLTR1 LTR ERV1 0 624 1 2 1200 466 246 36 43 chr9 80709205 80709345 -43366827 - B1F SINE Alu -10 139 1 3 1200 311 171 114 68 chr9 80709347 80709435 -43366737 + RSINE1 SINE B4 11 102 -63 3 1200 1091 248 126 20 chr9 80709525 80709867 -43366305 + Lx6 LINE L1 7081 7458 -2 3 1200 318 132 0 0 chr9 80710058 80710111 -43366061 + (T)n Simple_repeat Simple_repeat 1 53 0 3 1200 840 92 0 0 chr9 80710652 80710771 -43365401 + (TTC)n Simple_repeat Simple_repeat 2 120 0 3 1200 1005 123 0 0 chr9 80710771 80710909 -43365263 - B1_Mus1 SINE Alu -9 139 2 3 1200 181 137 0 56 chr9 80711245 80711299 -43364873 + T-rich Low_complexity Low_complexity 5 55 0 3 1200 1056 312 117 86 chr9 80711684 80712567 -43363605 + BLACKJACK DNA AcHobo 456 1365 -1579 3 1200 225 250 0 35 chr9 80712670 80712728 -43363444 + PB1D10 SINE Alu 62 117 0 3 1200 274 250 14 42 chr9 80712732 80712803 -43363369 + ID4_ SINE ID 2 70 -13 3 1200 331 268 87 63 chr9 80713093 80713300 -43362872 + BLACKJACK DNA AcHobo 1845 2056 -888 3 1200 2914 79 21 14 chr9 80713305 80713729 -43362443 - Lx LINE L1 -8 6646 6220 3 1200 38 39 0 0 chr9 80714175 80714227 -43361945 + AT_rich Low_complexity Low_complexity 1 52 0 3 1200 741 190 0 7 chr9 80714302 80714440 -43361732 + B1_Mur1 SINE Alu 11 147 -2 3 1200 395 339 23 50 chr9 80714453 80714544 -43361628 + BLACKJACK DNA AcHobo 2455 2548 -396 3 1200 6683 41 2 12 chr9 80714544 80715378 -43360794 - L1Md_F2 LINE L1 0 6582 5757 3 1200 395 339 23 50 chr9 80715378 80715544 -43360628 + BLACKJACK DNA AcHobo 2549 2704 -240 3 1200 293 82 0 20 chr9 80715691 80715741 -43360431 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1200 285 29 0 0 chr9 80715745 80715779 -43360393 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1200 21 0 0 0 chr9 80716787 80716808 -43359364 + AT_rich Low_complexity Low_complexity 1 21 0 3 1200 423 0 0 0 chr9 80717129 80717176 -43358996 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1200 291 318 27 0 chr9 80717392 80717502 -43358670 - PB1D9 SINE Alu -7 113 1 3 1200 2427 44 14 0 chr9 80717736 80718031 -43358141 + L1Md_F2 LINE L1 5288 5586 -297 3 1200 8262 36 2 1 chr9 80718031 80719026 -43357146 + L1Md_F2 LINE L1 5587 6582 0 3 1200 204 154 0 25 chr9 80719193 80719233 -43356939 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1200 21 36 0 0 chr9 80719663 80719691 -43356481 + AT_rich Low_complexity Low_complexity 1 28 0 3 1200 22 103 0 0 chr9 80720328 80720406 -43355766 + AT_rich Low_complexity Low_complexity 1 78 0 3 1200 227 311 0 0 chr9 80720690 80720751 -43355421 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1200 3924 199 44 1 chr9 80720794 80721547 -43354625 + Lx5 LINE L1 6263 7047 -3 3 1200 565 225 2 21 chr9 80721595 80721747 -43354425 + L1M3 LINE L1 5512 5658 -645 3 1200 309 256 103 11 chr9 80721777 80721864 -43354308 + Charlie12 DNA MER1_type 2 96 -2777 3 1200 252 213 0 0 chr9 80721844 80721891 -43354281 - RMER30 DNA MER1_type -151 51 5 3 1200 1043 247 91 41 chr9 80721893 80722278 -43353894 + MTE2a LTR MaLR 1 419 0 3 1200 264 30 0 0 chr9 80722391 80722424 -43353748 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 3 1200 607 228 52 0 chr9 80724365 80724501 -43351671 + B1_Mus2 SINE Alu 5 147 0 3 1200 186 118 0 0 chr9 80724520 80724554 -43351618 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 3 1200 1770 282 114 7 chr9 80724607 80725227 -43350945 + Lx8 LINE L1 6427 7113 -360 3 1200 444 286 26 103 chr9 80725257 80725452 -43350720 + B3A SINE B2 3 182 -16 3 1200 222 284 12 119 chr9 80725708 80725792 -43350380 + B4 SINE B4 11 85 -207 3 1200 271 328 74 25 chr9 80726318 80726440 -43349732 + MIRc SINE MIR 109 236 -32 3 1200 563 139 0 9 chr9 80727601 80727710 -43348462 + Lx LINE L1 6545 6652 -2 3 1200 1062 81 0 0 chr9 80727719 80727855 -43348317 + B1_Mus1 SINE Alu 1 136 -12 3 1200 366 42 0 0 chr9 80727856 80727904 -43348268 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1200 229 284 10 10 chr9 80729272 80729368 -43346804 + L1MEe LINE L1 1323 1418 -4824 3 1200 336 317 86 57 chr9 80729554 80729798 -43346374 + L1MEe LINE L1 1750 2000 -4166 3 1200 331 316 82 29 chr9 80729935 80730179 -43345993 + L1MEe LINE L1 2218 2474 -3692 3 1200 386 188 0 0 chr9 80730263 80730343 -43345829 - Lx7 LINE L1 -12 7684 7605 3 1200 207 245 19 0 chr9 80730345 80730398 -43345774 + A-rich Low_complexity Low_complexity 4 57 0 3 1200 714 200 10 2 chr9 80730438 80730835 -43345337 + (TATATG)n Simple_repeat Simple_repeat 1 399 0 3 1200 1179 208 34 48 chr9 80730892 80731185 -43344987 + Lx7 LINE L1 6967 7255 -441 3 1200 373 339 141 0 chr9 80731371 80731675 -43344497 - L1_Mur3 LINE L1 -3441 2439 2093 3 1200 255 333 20 20 chr9 80731736 80731883 -43344289 - L1M2 LINE L1 -4222 2627 2481 3 1200 23 78 0 0 chr9 80732164 80732215 -43343957 + AT_rich Low_complexity Low_complexity 1 51 0 3 1200 304 336 27 112 chr9 80732371 80732666 -43343506 + L1MEe LINE L1 3039 3308 -2838 3 1200 1363 226 35 154 chr9 80732684 80733144 -43343028 - MTD LTR MaLR -2 417 13 3 1200 804 115 0 0 chr9 80733792 80733914 -43342258 + (TTCC)n Simple_repeat Simple_repeat 4 125 0 3 1200 1277 64 0 6 chr9 80733914 80734086 -43342086 + (TTTC)n Simple_repeat Simple_repeat 3 174 0 3 1200 260 108 0 0 chr9 80734086 80734123 -43342049 + L1_Mur3 LINE L1 3496 3532 -2348 3 1200 2690 152 40 14 chr9 80734140 80734454 -43341718 - Lx LINE L1 -795 6178 5863 3 1200 216 0 0 0 chr9 80734454 80734478 -43341694 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1200 2690 101 40 2 chr9 80734478 80734661 -43341511 - Lx LINE L1 -792 5862 5681 3 1200 781 319 110 3 chr9 80736016 80736334 -43339838 - LTR80A LTR ERVL -33 550 199 3 1200 1353 142 15 38 chr9 80736336 80736599 -43339573 + L1Md_A LINE L1 6326 6582 0 3 1200 431 141 0 13 chr9 80736624 80736703 -43339469 + GA-rich Low_complexity Low_complexity 2 79 0 3 1200 267 54 0 0 chr9 80737760 80737797 -43338375 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1200 790 274 19 24 chr9 80738234 80738440 -43337732 + B3 SINE B2 1 205 -11 3 1200 1804 268 147 29 chr9 80739005 80739341 -43336831 - Lx9 LINE L1 -993 6651 6297 3 1200 6069 57 8 18 chr9 80739341 80740130 -43336042 + L1Md_F2 LINE L1 5802 6582 0 3 18 1804 258 101 26 chr9 80740130 80740644 -43335528 - Lx9 LINE L1 -1348 6296 5667 3 1201 1984 146 29 0 chr9 80740845 80741194 -43334978 - RLTR15 LTR ERVK 0 359 1 3 1201 621 138 0 0 chr9 80741220 80741307 -43334865 + Lx LINE L1 6384 6470 -184 3 1201 375 23 0 0 chr9 80742397 80742441 -43333731 + (TATG)n Simple_repeat Simple_repeat 2 45 0 3 1201 212 59 29 0 chr9 80742441 80742475 -43333697 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1201 504 0 0 0 chr9 80743063 80743119 -43333053 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 3 1201 688 228 12 23 chr9 80743123 80743294 -43332878 + B2_Mm2 SINE B2 2 170 -25 3 1201 255 213 59 92 chr9 80743503 80743622 -43332550 - Lx8 LINE L1 -29 7444 7330 3 1201 483 273 69 6 chr9 80744955 80745165 -43331007 - MIR SINE MIR -2 266 47 3 1201 682 326 95 15 chr9 80745431 80745758 -43330414 - MLT1A0 LTR MaLR 0 365 13 3 1201 24 67 0 0 chr9 80747037 80747082 -43329090 + AT_rich Low_complexity Low_complexity 1 45 0 3 1201 198 71 0 0 chr9 80747557 80747585 -43328587 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1201 469 285 47 31 chr9 80747884 80748076 -43328096 - B3A SINE B2 -2 196 2 3 1201 335 319 178 39 chr9 80748181 80748648 -43327524 - HAL1 LINE L1 -98 2409 1878 3 1201 558 312 57 89 chr9 80749391 80749795 -43326377 - HAL1 LINE L1 -944 1563 1173 3 1201 713 328 65 14 chr9 80749870 80750164 -43326008 - Lx8 LINE L1 -6 7467 7159 3 1201 1141 151 1 1 chr9 80750147 80750333 -43325839 - Lx5 LINE L1 -396 6604 6420 3 1201 879 308 0 0 chr9 80750385 80750612 -43325560 - Lx8 LINE L1 -297 7176 6950 3 1201 522 299 22 11 chr9 80750607 80750786 -43325386 - Lx8 LINE L1 -631 6842 6662 3 1201 1137 279 86 8 chr9 80750853 80751225 -43324947 - Lx8 LINE L1 -971 6502 6102 3 1201 922 150 92 34 chr9 80751367 80751574 -43324598 - L1_Mur3 LINE L1 -1640 4240 4022 3 1201 198 118 0 0 chr9 80751953 80751987 -43324185 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1201 425 330 40 101 chr9 80752005 80752204 -43323968 + B3A SINE B2 3 189 -9 3 1201 895 250 24 4 chr9 80753094 80753343 -43322829 - Lx3C LINE L1 -2 6974 6721 3 1201 219 103 0 0 chr9 80753684 80753723 -43322449 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 1201 536 288 0 28 chr9 80754372 80754515 -43321657 - B1_Mur1 SINE Alu -2 147 9 3 1201 274 347 30 85 chr9 80754376 80754540 -43321632 - B4 SINE B4 -69 223 69 3 1201 22 80 0 0 chr9 80754790 80754840 -43321332 + AT_rich Low_complexity Low_complexity 1 50 0 3 1201 769 299 24 0 chr9 80755082 80755289 -43320883 + B3 SINE B2 1 212 -4 3 1201 3301 46 5 0 chr9 80755568 80755962 -43320210 - MTA_Mm LTR MaLR 0 396 1 3 1201 9043 41 6 0 chr9 80755962 80757052 -43319120 - MTA_Mm-int LTR MaLR 0 1098 3 3 1201 2962 26 9 0 chr9 80757056 80757399 -43318773 - MTA_Mm LTR MaLR 0 346 1 3 1201 1710 255 86 20 chr9 80759277 80759824 -43316348 + Lx6 LINE L1 6496 7460 0 3 1201 26 30 0 0 chr9 80761308 80761341 -43314831 + AT_rich Low_complexity Low_complexity 1 33 0 3 1201 252 176 0 0 chr9 80761885 80761953 -43314219 + CT-rich Low_complexity Low_complexity 2 69 0 3 1201 306 115 0 0 chr9 80761953 80762005 -43314167 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1201 1064 335 72 50 chr9 80762143 80762786 -43313386 - Lx9 LINE L1 -353 7291 6635 3 1201 369 265 18 64 chr9 80762826 80762935 -43313237 + B3A SINE B2 40 145 -53 3 1201 435 19 0 0 chr9 80762938 80762990 -43313182 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1201 792 338 52 26 chr9 80763378 80763843 -43312329 - Lx8 LINE L1 -17 7456 6980 3 1201 189 0 0 0 chr9 80764484 80764505 -43311667 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3 1201 8153 160 24 8 chr9 80765653 80767571 -43308601 + Lx2 LINE L1 4937 6904 -93 3 1201 194 303 101 67 chr9 80769672 80769881 -43306291 - MIRb SINE MIR -3 265 50 3 1201 615 228 122 20 chr9 80769990 80770187 -43305985 + B4 SINE B4 2 218 -74 3 1201 412 206 0 0 chr9 80770506 80770579 -43305593 - Lx4B LINE L1 -757 6301 6229 3 1201 2513 119 6 3 chr9 80770554 80770915 -43305257 + Lx4B LINE L1 6264 6625 -433 3 1201 1490 309 42 49 chr9 80770969 80771596 -43304576 + Lx8 LINE L1 6705 7326 -147 3 1201 244 345 101 43 chr9 80771820 80772077 -43304095 + L2a LINE L2 3154 3425 -1 4 1201 1377 277 41 43 chr9 80772813 80773254 -43302918 - Lx6 LINE L1 -25 7435 6996 4 1201 375 244 29 150 chr9 80773242 80773449 -43302723 - Lx6 LINE L1 -1240 6220 6039 4 1201 1390 179 56 26 chr9 80773503 80773783 -43302389 + RMER6B LTR ERVK 1 289 -172 4 1201 414 0 0 0 chr9 80773783 80773829 -43302343 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1201 1390 252 30 60 chr9 80773829 80773959 -43302213 + RMER6B LTR ERVK 290 456 -5 4 1201 3851 189 57 20 chr9 80773967 80774872 -43301300 - Lx6 LINE L1 -1515 5945 5005 4 1201 252 86 0 0 chr9 80774872 80774907 -43301265 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 4 1201 1495 130 8 12 chr9 80774956 80775206 -43300966 - L1_Mus3 LINE L1 0 6638 6390 4 1201 521 162 0 9 chr9 80775207 80775313 -43300859 - Lx6 LINE L1 -866 5014 4910 4 1201 357 261 96 48 chr9 80775462 80775587 -43300585 + MTEa LTR MaLR 237 367 -12 4 1201 243 188 0 0 chr9 80775719 80775767 -43300405 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 4 1201 24 32 0 0 chr9 80775866 80775897 -43300275 + AT_rich Low_complexity Low_complexity 1 31 0 4 1201 21 0 0 0 chr9 80776827 80776848 -43299324 + AT_rich Low_complexity Low_complexity 1 21 0 4 1201 29 0 0 0 chr9 80776935 80776964 -43299208 + AT_rich Low_complexity Low_complexity 1 29 0 4 1201 36 62 0 0 chr9 80777024 80777088 -43299084 + AT_rich Low_complexity Low_complexity 1 64 0 4 1201 798 318 5 23 chr9 80777477 80777696 -43298476 + MTE2a LTR MaLR 1 215 -164 4 1201 347 300 22 0 chr9 80777832 80777922 -43298250 - Tigger7 DNA MER2_type -9 2482 2391 4 1201 524 298 63 5 chr9 80777920 80778109 -43298063 - Tigger7 DNA MER2_type -1751 740 541 4 1201 1690 201 62 6 chr9 80778113 80778469 -43297703 + ORR1C2 LTR MaLR 5 380 -4 4 1201 478 358 45 3 chr9 80778471 80778760 -43297412 - Tigger7 DNA MER2_type -1951 540 240 4 1201 290 348 0 0 chr9 80778761 80778853 -43297319 - Tigger7 DNA MER2_type -2387 104 13 4 1201 4774 104 15 18 chr9 80779183 80779914 -43296258 + L1_Mus3 LINE L1 5904 6632 -6 4 1201 23 0 0 0 chr9 80779982 80780005 -43296167 + AT_rich Low_complexity Low_complexity 1 23 0 4 1201 375 106 0 0 chr9 80780413 80780479 -43295693 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1201 228 222 47 88 chr9 80780511 80780642 -43295530 + Zaphod2 DNA Tip100 501 628 -2896 4 1201 355 250 124 36 chr9 80780642 80780779 -43295393 - B1F1 SINE Alu 0 149 1 4 1201 228 222 47 88 chr9 80780779 80780795 -43295377 + Zaphod2 DNA Tip100 629 642 -2882 4 1201 1162 169 78 4 chr9 80780853 80781117 -43295055 - L1_Mur2 LINE L1 -1703 4443 4126 4 1201 301 312 0 0 chr9 80781134 80781214 -43294958 - RSINE1 SINE B4 -53 112 33 4 1201 901 303 91 82 chr9 80781638 80781805 -43294367 + Zaphod2 DNA Tip100 982 1153 -2371 4 1201 579 248 0 8 chr9 80781805 80781939 -43294233 - B1_Mur1 SINE Alu -15 134 2 4 1201 901 303 91 82 chr9 80781939 80782826 -43293346 + Zaphod2 DNA Tip100 1154 2046 -1478 4 1201 468 273 0 0 chr9 80783365 80783464 -43292708 + B1_Mur1 SINE Alu 44 142 -7 4 1201 180 0 0 0 chr9 80784888 80784908 -43291264 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1201 232 170 19 0 chr9 80786449 80786502 -43289670 + Lx9 LINE L1 7589 7642 -2 4 1201 204 302 80 54 chr9 80786729 80786841 -43289331 - L2 LINE L2 -1322 2097 1983 4 1201 527 324 42 59 chr9 80788505 80788794 -43287378 - B4A SINE B4 -8 284 1 4 1201 369 314 31 46 chr9 80789828 80789958 -43286214 + B3A SINE B2 67 194 -4 4 1201 288 0 0 0 chr9 80789963 80789995 -43286177 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1201 519 17 0 0 chr9 80790248 80790308 -43285864 + (GAA)n Simple_repeat Simple_repeat 1 60 0 4 1201 874 271 22 13 chr9 80790641 80790869 -43285303 - RMER15 LTR ERVL -18 557 328 4 1201 915 305 73 42 chr9 80790959 80791275 -43284897 + L1MA4A LINE L1 2840 3165 -2978 4 1201 1769 146 3 64 chr9 80791275 80791618 -43284554 - ORR1A3 LTR MaLR -4 322 1 4 1201 915 305 73 42 chr9 80791618 80792392 -43283780 + L1MA4A LINE L1 3166 3964 -2179 4 1201 2668 267 48 68 chr9 80792495 80793592 -43282580 - Lx9 LINE L1 -15 7629 6554 4 1201 593 294 86 0 chr9 80793616 80793813 -43282359 + Lx9 LINE L1 6307 6520 -1124 4 1201 540 301 47 5 chr9 80793823 80794037 -43282135 + L1MA4A LINE L1 5704 5926 -377 4 1201 218 163 0 39 chr9 80794059 80794110 -43282062 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 4 1201 291 224 0 0 chr9 80794836 80794912 -43281260 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1201 337 259 25 0 chr9 80796444 80796525 -43279647 + MTEb LTR MaLR 165 247 -132 4 1201 619 293 10 10 chr9 80796532 80796732 -43279440 - Lx9 LINE L1 -176 7468 7269 4 1201 876 257 284 70 chr9 80796732 80797069 -43279103 + MTD LTR MaLR 3 411 -8 4 1201 359 337 102 29 chr9 80797287 80797602 -43278570 + L1_Mur3 LINE L1 879 1216 -6496 4 1201 424 265 43 87 chr9 80797633 80797794 -43278378 - Lx9 LINE L1 -512 7132 6979 4 1201 1270 266 54 0 chr9 80798675 80799009 -43277163 + MTD LTR MaLR 1 352 -67 4 1201 413 266 50 82 chr9 80799360 80799679 -43276493 - L1MB8 LINE L1 -218 5960 5652 4 1201 402 308 107 96 chr9 80799749 80800104 -43276068 - L1MEf LINE L1 -5155 1045 687 4 1201 443 236 11 0 chr9 80801249 80801338 -43274834 + PB1D10 SINE Alu 7 96 -21 4 1201 489 34 0 0 chr9 80801347 80801406 -43274766 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1201 459 0 0 0 chr9 80801406 80801457 -43274715 + (GGA)n Simple_repeat Simple_repeat 2 52 0 4 1201 1166 89 6 0 chr9 80801457 80801626 -43274546 + (GA)n Simple_repeat Simple_repeat 1 170 0 4 1201 459 323 97 0 chr9 80802506 80802701 -43273471 - B3 SINE B2 -2 214 1 4 1201 245 372 71 41 chr9 80802850 80803116 -43273056 + MLT1D LTR MaLR 188 461 -44 4 1201 6047 65 1 14 chr9 80803547 80804345 -43271827 + L1Md_F2 LINE L1 5795 6582 0 4 1201 683 193 214 33 chr9 80804578 80804660 -43271512 - B3 SINE B2 0 216 121 4 1201 1429 213 32 27 chr9 80804660 80805031 -43271141 - ORR1D1 LTR MaLR -1 373 1 4 1201 683 193 214 33 chr9 80805031 80805130 -43271042 - B3 SINE B2 -96 120 2 4 1201 7653 165 30 27 chr9 80805365 80807591 -43268581 - Lx5 LINE L1 -3 7047 4822 4 1201 452 32 16 0 chr9 80808186 80808248 -43267924 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1201 732 340 55 4 chr9 80808249 80808506 -43267666 - B4A SINE B4 -20 272 3 4 1201 387 349 66 37 chr9 80808850 80809121 -43267051 - ERVL-B4-int LTR ERVL -3681 2033 1755 4 1201 272 266 73 0 chr9 80810094 80810203 -43265969 + L1MA9 LINE L1 6174 6290 -22 4 1201 206 139 0 27 chr9 80810735 80810772 -43265400 + GA-rich Low_complexity Low_complexity 3 38 0 4 1201 1128 78 0 0 chr9 80811423 80811564 -43264608 + B1_Mus2 SINE Alu 1 141 -6 4 1201 27 29 0 0 chr9 80811664 80811698 -43264474 + AT_rich Low_complexity Low_complexity 1 34 0 4 1201 192 77 0 0 chr9 80812547 80812573 -43263599 + (TTG)n Simple_repeat Simple_repeat 3 28 0 4 1201 731 251 30 6 chr9 80812573 80812741 -43263431 - Lx6 LINE L1 -34 7426 7255 4 1201 432 0 0 0 chr9 80813052 80813100 -43263072 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1201 288 0 0 0 chr9 80813100 80813131 -43263041 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1201 480 287 131 8 chr9 80813166 80813516 -43262656 - L1M2 LINE L1 -619 5681 5287 4 1201 315 71 0 0 chr9 80813518 80813560 -43262612 + (TTG)n Simple_repeat Simple_repeat 3 44 0 4 1201 52 41 0 0 chr9 80813779 80813852 -43262320 + AT_rich Low_complexity Low_complexity 1 73 0 4 1201 381 43 0 0 chr9 80815501 80815548 -43260624 + (TATAA)n Simple_repeat Simple_repeat 4 50 0 4 1201 4192 50 2 29 chr9 80815548 80816109 -43260063 + LTRIS2 LTR ERV1 19 564 0 4 1201 347 214 60 0 chr9 80816241 80816325 -43259847 + L1MA7 LINE L1 6185 6273 -18 4 1201 581 206 87 8 chr9 80816325 80816452 -43259720 - RLTR25B LTR ERVK 0 1028 892 4 1201 3378 172 98 62 chr9 80816456 80817199 -43258973 - RLTR25B LTR ERVK -258 770 1 4 1201 474 65 0 0 chr9 80817413 80817475 -43258697 + (GGA)n Simple_repeat Simple_repeat 3 64 0 4 1201 232 333 60 11 chr9 80817838 80818023 -43258149 + L1M2 LINE L1 4641 4834 -1309 4 1201 287 317 0 0 chr9 80818027 80818109 -43258063 - ORR1D-int LTR MaLR -183 1187 1106 4 1201 230 246 0 80 chr9 80818109 80818184 -43257988 + ORR1D-int LTR MaLR 1212 1280 -90 4 1201 2405 251 35 4 chr9 80818186 80818697 -43257475 + Lx6 LINE L1 6930 7456 -4 4 1201 23 0 0 0 chr9 80818952 80818975 -43257197 + AT_rich Low_complexity Low_complexity 1 23 0 4 1201 872 121 0 7 chr9 80819887 80820029 -43256143 + (TTTC)n Simple_repeat Simple_repeat 4 144 0 4 1201 423 56 0 0 chr9 80820029 80820083 -43256089 + (TCC)n Simple_repeat Simple_repeat 3 56 0 4 1201 525 32 0 0 chr9 80820083 80820146 -43256026 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1201 1270 165 25 0 chr9 80820157 80820394 -43255778 - Lx LINE L1 -5 6649 6407 4 1201 1201 206 29 30 chr9 80822223 80822557 -43253615 + RMER6D LTR ERVK 1 365 -355 4 1201 452 302 0 92 chr9 80822696 80822838 -43253334 + RSINE1 SINE B4 12 140 -25 4 1201 23 0 0 0 chr9 80823034 80823057 -43253115 + AT_rich Low_complexity Low_complexity 1 23 0 4 1201 222 258 42 70 chr9 80823936 80824007 -43252165 + MIR SINE MIR 74 142 -66 4 1201 202 299 13 25 chr9 80824237 80824316 -43251856 + GA-rich Low_complexity Low_complexity 1 78 0 4 1201 250 303 75 15 chr9 80825608 80825675 -43250497 - B3A SINE B2 -32 166 96 4 1201 369 354 16 27 chr9 80828992 80829178 -43246994 - B3A SINE B2 -14 184 1 4 1201 227 208 0 0 chr9 80829311 80829359 -43246813 + A-rich Low_complexity Low_complexity 1 48 0 4 1201 284 291 0 34 chr9 80830087 80830176 -43245996 + CT-rich Low_complexity Low_complexity 4 89 0 4 1201 404 321 29 36 chr9 80830457 80830596 -43245576 + MTE2a LTR MaLR 8 145 -234 4 1201 249 33 0 0 chr9 80830717 80830747 -43245425 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 1201 21 36 0 0 chr9 80831043 80831071 -43245101 + AT_rich Low_complexity Low_complexity 1 28 0 4 1201 225 262 38 0 chr9 80833047 80833127 -43243045 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 1201 447 317 85 28 chr9 80833864 80834075 -43242097 + MLT1A0 LTR MaLR 1 223 -142 4 1201 552 68 0 0 chr9 80834302 80834375 -43241797 + (CAG)n Simple_repeat Simple_repeat 2 74 0 4 1201 369 328 137 55 chr9 80834956 80835228 -43240944 + ORR1E LTR MaLR 1 294 -90 4 1201 761 302 88 29 chr9 80835564 80835905 -43240267 + MLT1B LTR MaLR 1 361 -29 4 1201 237 314 43 0 chr9 80836203 80836273 -43239899 - MLT1J1 LTR MaLR -303 141 69 5 1201 286 340 93 131 chr9 80838656 80838968 -43237204 + MLT2F LTR ERVL 320 619 -44 5 1201 2409 76 3 3 chr9 80838995 80839323 -43236849 - L1_Mus2 LINE L1 0 6566 6239 5 1201 29 0 0 0 chr9 80839542 80839571 -43236601 + AT_rich Low_complexity Low_complexity 1 29 0 5 1201 217 242 47 31 chr9 80839939 80840067 -43236105 + (TAAA)n Simple_repeat Simple_repeat 3 132 0 5 1201 654 260 101 10 chr9 80840262 80840460 -43235712 + B3 SINE B2 1 216 0 5 1201 334 55 13 64 chr9 80842616 80842694 -43233478 + (CAAAAA)n Simple_repeat Simple_repeat 2 75 0 5 1201 340 336 55 14 chr9 80842872 80843017 -43233155 + MER45A DNA Tip100 17 167 -11 5 1201 450 36 0 0 chr9 80843111 80843167 -43233005 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1201 37857 33 2 1 chr9 80843588 80852150 -43224022 - L1Md_T LINE L1 0 6585 1 5 1201 23 0 0 0 chr9 80852365 80852388 -43223784 + AT_rich Low_complexity Low_complexity 1 23 0 5 1201 291 54 0 0 chr9 80852537 80852574 -43223598 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1201 777 295 24 57 chr9 80852619 80852917 -43223255 - B4A SINE B4 -4 288 1 5 1201 29 47 0 0 chr9 80852996 80853039 -43223133 + AT_rich Low_complexity Low_complexity 1 43 0 5 1201 321 292 123 9 chr9 80853288 80853402 -43222770 + B4A SINE B4 4 130 -162 5 1201 435 38 0 0 chr9 80854195 80854248 -43221924 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1201 554 200 273 0 chr9 80856216 80856381 -43219791 - B3 SINE B2 -5 211 2 5 1201 460 401 50 26 chr9 80857463 80857806 -43218366 - L2 LINE L2 -2743 676 326 5 1201 231 103 0 0 chr9 80858598 80858637 -43217535 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1201 588 14 0 0 chr9 80858637 80858706 -43217466 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1201 201 121 0 0 chr9 80858938 80858971 -43217201 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1201 2604 43 6 0 chr9 80858978 80859303 -43216869 - L1_Mus1 LINE L1 0 6567 6241 5 1201 249 57 0 0 chr9 80861288 80861323 -43214849 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1201 1290 281 152 13 chr9 80861688 80862228 -43213944 + MER67C LTR ERV1 61 675 -36 5 1201 586 274 59 19 chr9 80862603 80862993 -43213179 - L1MB5 LINE L1 -181 5997 5553 5 1201 323 44 0 0 chr9 80863647 80863692 -43212480 + B1_Mm SINE Alu 100 144 -3 5 1201 243 79 0 0 chr9 80863692 80863730 -43212442 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1201 308 43 0 21 chr9 80863747 80863794 -43212378 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 5 1201 71 47 0 0 chr9 80864455 80864561 -43211611 + AT_rich Low_complexity Low_complexity 1 106 0 5 1201 375 339 51 84 chr9 80864624 80864898 -43211274 - MLT1C LTR MaLR -2 465 201 5 1201 417 310 79 32 chr9 80865577 80865767 -43210405 + MLT1D LTR MaLR 306 504 -1 5 1201 1094 55 29 41 chr9 80865781 80865797 -43210375 - L1Md_F2 LINE L1 -14 6568 6550 5 1201 4602 77 14 26 chr9 80865797 80866455 -43209717 - L1_Mus1 LINE L1 -1 6566 5917 5 1201 1094 55 29 41 chr9 80866455 80866608 -43209564 - L1Md_F2 LINE L1 -33 6549 6401 5 1201 232 354 25 0 chr9 80866923 80867002 -43209170 - L2 LINE L2 -616 2803 2723 5 1201 347 315 142 38 chr9 80867172 80867518 -43208654 + LTR82A LTR ERVL 174 555 -317 5 1201 21 57 0 0 chr9 80868340 80868375 -43207797 + AT_rich Low_complexity Low_complexity 1 35 0 5 1201 881 189 8 113 chr9 80868443 80868716 -43207456 - Lx2B LINE L1 -13 6987 6503 5 1201 471 86 12 0 chr9 80868745 80868826 -43207346 - Lx2 LINE L1 0 6997 6916 5 1201 231 0 0 0 chr9 80868826 80868851 -43207321 - Lx2 LINE L1 -500 6497 6473 5 1201 513 105 13 0 chr9 80869254 80869330 -43206842 - Lx2B LINE L1 -530 6467 6391 5 1201 3705 119 43 10 chr9 80869327 80869931 -43206241 + Lx2 LINE L1 5769 6392 -605 5 1201 203 315 100 11 chr9 80870304 80870394 -43205778 - L2c LINE L2 -64 3323 3226 5 1201 687 12 0 0 chr9 80871309 80871389 -43204783 + (TAAAG)n Simple_repeat Simple_repeat 1 80 0 5 1202 630 309 143 53 chr9 80872499 80873087 -43203085 + L2 LINE L2 1741 2381 -1038 5 1202 963 164 4 4 chr9 80873748 80873980 -43202192 + CT-rich Low_complexity Low_complexity 1 232 0 5 1202 3066 73 10 0 chr9 80874223 80874619 -43201553 + MTB LTR MaLR 1 400 0 5 1202 520 267 77 56 chr9 80874661 80874804 -43201368 - RSINE1 SINE B4 -1 164 19 5 1202 28 48 0 0 chr9 80875959 80876001 -43200171 + AT_rich Low_complexity Low_complexity 1 42 0 5 1202 526 29 43 0 chr9 80876910 80876979 -43199193 + L1_Mm LINE L1 5515 5586 -297 5 1202 9034 2 0 0 chr9 80876979 80877975 -43198197 + L1Md_A LINE L1 5587 6582 0 5 1202 301 232 90 18 chr9 80878651 80878818 -43197354 - L1_Rod LINE L1 -4310 1537 1359 5 1202 308 231 0 0 chr9 80878887 80878952 -43197220 - L1_Rod LINE L1 -4494 1353 1289 5 1202 3543 113 22 3 chr9 80878951 80879545 -43196627 + L1_Mur1 LINE L1 3014 3618 -2268 5 1202 737 269 68 62 chr9 80879542 80879698 -43196474 - L1_Rod LINE L1 -6324 1284 1128 5 1202 255 93 0 0 chr9 80879698 80879741 -43196431 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1202 737 269 68 62 chr9 80879741 80879968 -43196204 - L1_Rod LINE L1 -6481 1127 901 5 1202 286 314 142 27 chr9 80880184 80880403 -43195769 - L2 LINE L2 -955 2464 2221 5 1202 737 301 27 27 chr9 80881343 80881568 -43194604 + RMER15 LTR ERVL 338 562 -13 5 1202 369 0 0 0 chr9 80881743 80881784 -43194388 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1202 25 0 0 0 chr9 80882809 80882834 -43193338 + AT_rich Low_complexity Low_complexity 1 25 0 5 1202 243 207 96 30 chr9 80882993 80883118 -43193054 - L1MA6 LINE L1 -10 6290 6159 5 1202 411 305 84 8 chr9 80883127 80883259 -43192913 - B3A SINE B2 -6 210 71 5 1202 1337 304 58 16 chr9 80883295 80883937 -43192235 - L1MA6 LINE L1 -116 6184 5516 5 1202 737 310 127 27 chr9 80884101 80884808 -43191364 - L1MA6 LINE L1 -864 5279 4502 5 1202 371 312 19 0 chr9 80884816 80884970 -43191202 + (TATG)n Simple_repeat Simple_repeat 3 159 0 5 1202 749 292 42 17 chr9 80884970 80885378 -43190794 - L1MA6 LINE L1 -1645 4498 4081 5 1202 465 349 71 14 chr9 80885366 80885578 -43190594 + Lx8 LINE L1 7070 7293 -180 5 1202 387 294 102 41 chr9 80885709 80886003 -43190169 - L1MA6 LINE L1 -2037 4106 3795 5 1202 3374 178 9 110 chr9 80886083 80886862 -43189310 + RMER6A LTR ERVK 57 756 0 5 1202 430 314 57 4 chr9 80887058 80887339 -43188833 - L1MB1 LINE L1 -111 6057 5762 5 1202 250 201 65 109 chr9 80887983 80888110 -43188062 - MIR SINE MIR -40 228 101 5 1202 27 62 0 0 chr9 80888410 80888458 -43187714 + AT_rich Low_complexity Low_complexity 1 48 0 5 1202 562 306 27 5 chr9 80888462 80888649 -43187523 + Lx8 LINE L1 6566 6756 -717 5 1202 691 273 40 23 chr9 80888671 80888847 -43187325 - B3 SINE B2 -11 205 27 5 1202 1137 62 0 0 chr9 80888898 80889044 -43187128 - B1_Mus2 SINE Alu 0 147 2 5 1202 1290 306 91 25 chr9 80889093 80889663 -43186509 + Lx8 LINE L1 6748 7355 -118 5 1202 22 0 0 0 chr9 80889783 80889805 -43186367 + AT_rich Low_complexity Low_complexity 1 22 0 5 1202 748 202 72 18 chr9 80889921 80890087 -43186085 + MTC-int LTR MaLR 294 468 -790 5 1202 707 225 120 5 chr9 80890088 80890280 -43185892 + MTD LTR MaLR 206 419 0 5 1202 378 291 0 0 chr9 80890311 80890390 -43185782 - ID4_ SINE ID 0 83 5 5 1202 213 261 83 42 chr9 80890405 80890477 -43185695 - PB1D10 SINE Alu 0 117 43 5 1202 545 316 14 22 chr9 80890709 80890848 -43185324 + RSINE1 SINE B4 16 153 -12 5 1202 351 0 0 0 chr9 80891072 80891111 -43185061 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 1202 342 0 0 0 chr9 80891113 80891151 -43185021 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1202 2818 123 5 18 chr9 80891169 80891607 -43184565 + Lx2 LINE L1 6565 6996 -1 5 1202 29 0 0 0 chr9 80891907 80891936 -43184236 + AT_rich Low_complexity Low_complexity 1 29 0 5 1202 248 0 31 0 chr9 80891964 80891996 -43184176 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1202 35157 74 8 5 chr9 80891998 80898079 -43178093 - L1Md_F2 LINE L1 -19 6563 481 5 1202 593 289 174 19 chr9 80898232 80898542 -43177630 - Lx8 LINE L1 -826 6647 6290 5 1202 241 265 111 0 chr9 80898597 80898714 -43177458 - L1MA6 LINE L1 -15 6285 6156 5 1202 275 431 7 14 chr9 80899501 80899640 -43176532 + ID_B1 SINE B4 76 213 -11 5 1202 234 211 53 0 chr9 80901014 80901071 -43175101 + tRNA-Ala-GCY_ tRNA tRNA 2 61 -14 5 1202 21 0 0 0 chr9 80901128 80901149 -43175023 + AT_rich Low_complexity Low_complexity 1 21 0 5 1202 500 241 263 21 chr9 80901164 80901458 -43174714 + ORR1D2 LTR MaLR 6 370 0 5 1202 238 324 65 22 chr9 80901611 80901750 -43174422 - MER45B DNA Tip100 -7 1033 889 5 1202 2133 123 6 55 chr9 80902077 80902421 -43173751 - ORR1A2 LTR MaLR 0 327 1 5 1202 1249 7 0 0 chr9 80902529 80902671 -43173501 - L1Md_F2 LINE L1 -774 5808 5667 5 1202 4235 48 5 35 chr9 80902671 80903235 -43172937 + L1Md_F2 LINE L1 6024 6570 -12 5 1202 330 271 62 10 chr9 80903410 80903507 -43172665 + B3 SINE B2 115 216 0 5 1202 307 191 46 37 chr9 80903528 80903637 -43172535 + L1M1 LINE L1 5520 5629 -671 5 1202 346 264 126 27 chr9 80903642 80903777 -43172395 + Lx5 LINE L1 5633 5780 -1270 5 1202 240 35 0 0 chr9 80903777 80903806 -43172366 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1202 346 280 138 25 chr9 80903806 80903980 -43172192 + Lx5 LINE L1 5781 6014 -283 5 1202 381 117 0 0 chr9 80904328 80904388 -43171784 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1202 21 0 0 0 chr9 80904557 80904578 -43171594 + AT_rich Low_complexity Low_complexity 1 21 0 5 1202 21 0 0 0 chr9 80905758 80905779 -43170393 + AT_rich Low_complexity Low_complexity 1 21 0 5 1202 212 0 36 0 chr9 80906214 80906242 -43169930 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1202 405 0 0 0 chr9 80906522 80906567 -43169605 + (T)n Simple_repeat Simple_repeat 1 45 0 5 1202 790 257 6 0 chr9 80906829 80907004 -43169168 + B3A SINE B2 1 176 -22 5 1202 540 128 20 0 chr9 80907732 80907834 -43168338 - L1Md_F2 LINE L1 -2 6580 6477 5 1202 26 64 0 0 chr9 80908130 80908177 -43167995 + AT_rich Low_complexity Low_complexity 1 47 0 5 1202 475 36 0 0 chr9 80908542 80908598 -43167574 + L1Md_F2 LINE L1 5531 5586 -297 6 1202 8441 29 0 5 chr9 80908599 80909595 -43166577 + L1Md_F2 LINE L1 5588 6578 -4 6 1202 326 345 10 12 chr9 80909722 80910067 -43166105 + CT-rich Low_complexity Low_complexity 1 344 0 6 1202 202 374 6 6 chr9 80910109 80910289 -43165883 + CT-rich Low_complexity Low_complexity 1 180 0 6 1202 381 288 43 14 chr9 80910664 80910805 -43165367 + CT-rich Low_complexity Low_complexity 4 148 0 6 1202 719 324 14 7 chr9 80911008 80911294 -43164878 - Lx9 LINE L1 -149 7495 7208 6 1202 1351 317 118 20 chr9 80911309 80912013 -43164159 + Lx9 LINE L1 6412 7184 -460 6 1202 314 75 0 0 chr9 80912013 80912053 -43164119 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1202 738 101 0 37 chr9 80912053 80912187 -43163985 + (TTCC)n Simple_repeat Simple_repeat 3 131 0 6 1202 412 221 36 12 chr9 80912188 80912284 -43163888 - B1F1 SINE Alu -22 105 1 6 1202 420 118 0 0 chr9 80913952 80914020 -43162152 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1202 643 56 0 16 chr9 80914767 80914881 -43161291 + L1_Mm LINE L1 2533 2641 -3242 6 1202 4893 89 73 2 chr9 80914883 80916103 -43160069 + L1Md_F2 LINE L1 5338 6645 -352 6 1202 1342 132 22 17 chr9 80916092 80916323 -43159849 + L1Md_F2 LINE L1 6765 6996 -1 6 1202 385 227 0 0 chr9 80916554 80916629 -43159543 + L1M4 LINE L1 828 902 -5640 6 1202 322 298 131 8 chr9 80916711 80917035 -43159137 + L1MC LINE L1 5079 5452 -726 6 1202 240 59 0 0 chr9 80917072 80917106 -43159066 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1202 230 368 0 0 chr9 80917379 80917474 -43158698 + RLTR14 LTR ERV1 1 95 -287 6 1202 23992 161 22 22 chr9 80919214 80925248 -43150924 + Lx LINE L1 568 6606 -48 6 1202 1761 152 35 22 chr9 80926039 80926355 -43149817 - ORR1A2 LTR MaLR -7 320 1 6 1202 234 215 61 15 chr9 80926764 80926830 -43149342 - L1M5 LINE L1 -323 5801 5733 6 1202 381 186 358 0 chr9 80927737 80927857 -43148315 - B2_Mm2 SINE B2 -32 163 1 6 1202 1969 282 27 38 chr9 80928038 80928676 -43147496 + Lx9 LINE L1 6401 7031 -613 6 1202 275 0 0 28 chr9 80928679 80928715 -43147457 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 6 1202 465 313 7 0 chr9 80928749 80928896 -43147276 + Lx8 LINE L1 6877 7024 -449 6 1202 26 50 0 0 chr9 80929027 80929067 -43147105 + AT_rich Low_complexity Low_complexity 1 40 0 6 1202 1186 276 102 10 chr9 80929940 80930324 -43145848 + MTD LTR MaLR 1 419 0 6 1202 3649 130 32 0 chr9 80930823 80931416 -43144756 + Lx2 LINE L1 6386 6997 0 6 1202 301 343 29 0 chr9 80932104 80932209 -43143963 - MER105 DNA DNA -75 129 22 6 1202 1549 246 37 42 chr9 80932467 80932874 -43143298 - MTD LTR MaLR -6 413 9 6 1202 846 0 0 0 chr9 80933139 80933233 -43142939 + (TTC)n Simple_repeat Simple_repeat 3 96 0 6 1202 225 178 0 0 chr9 80933457 80933502 -43142670 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 6 1202 304 276 104 9 chr9 80933902 80934008 -43142164 - HAL1-3A_ME LINE L1 -458 2400 2285 6 1202 1463 234 80 54 chr9 80934794 80935292 -43140880 - RLTR31_Mur LTR ERVK -4 549 39 6 1202 1718 118 42 56 chr9 80935298 80935604 -43140568 + Lx LINE L1 6320 6621 -33 6 1202 508 0 14 29 chr9 80935604 80935673 -43140499 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 6 1202 320 327 66 46 chr9 80935808 80936008 -43140164 - MER58A DNA MER1_type -2106 314 1 6 1202 953 235 30 0 chr9 80936230 80936430 -43139742 - B3 SINE B2 -10 206 1 6 1202 297 0 0 0 chr9 80936578 80936611 -43139561 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1202 986 110 0 6 chr9 80936611 80936766 -43139406 + (TA)n Simple_repeat Simple_repeat 2 156 0 6 1202 198 0 0 0 chr9 80936781 80936803 -43139369 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1202 1137 253 128 50 chr9 80936838 80936987 -43139185 + Lx9 LINE L1 5254 5424 -423 6 1202 3606 65 17 0 chr9 80936987 80937451 -43138721 + L1_Mus1 LINE L1 6096 6567 0 6 1202 1137 257 122 43 chr9 80937451 80937929 -43138243 + Lx9 LINE L1 5425 5966 -1678 6 1202 426 39 0 0 chr9 80938101 80938153 -43138019 + (GGA)n Simple_repeat Simple_repeat 3 54 0 6 1202 2268 108 3 33 chr9 80938626 80938961 -43137211 + ORR1A2 LTR MaLR 3 327 0 6 1202 258 241 35 0 chr9 80939525 80939583 -43136589 + BC1_Mm scRNA scRNA 1 60 -92 6 1202 621 306 153 47 chr9 80939611 80939950 -43136222 + Lx9 LINE L1 6328 6702 -771 6 1202 6088 169 55 64 chr9 80939957 80940929 -43135243 - Lx2B LINE L1 -870 6130 5148 6 1202 908 101 7 0 chr9 80940929 80941067 -43135105 + (TTCTC)n Simple_repeat Simple_repeat 4 142 0 6 1202 6088 175 42 128 chr9 80941067 80941574 -43134598 - Lx2B LINE L1 -730 5147 4629 6 1202 963 78 0 0 chr9 80941574 80941703 -43134469 - B1_Mus2 SINE Alu 0 147 19 6 1202 232 264 84 15 chr9 80941614 80941745 -43134427 - ORR1B1-int LTR MaLR -755 754 615 6 1202 575 199 27 41 chr9 80941703 80941721 -43134451 - ID_B1 SINE B4 0 224 80 6 1202 6088 175 42 128 chr9 80941745 80942053 -43134119 - Lx2B LINE L1 -730 4628 4312 6 1202 1898 180 29 20 chr9 80942062 80942413 -43133759 - MTC LTR MaLR -64 357 4 6 1202 36458 28 4 8 chr9 80943791 80948967 -43127205 + L1Md_T LINE L1 439 5586 -297 6 1202 8216 43 1 0 chr9 80948967 80949961 -43126211 + L1Md_T LINE L1 5587 6581 -1 6 1202 6869 117 25 0 chr9 80950569 80951593 -43124579 - L1_Mus4 LINE L1 0 6636 5587 6 1202 5835 114 11 9 chr9 80951615 80953294 -43122878 - L1VL4 LINE L1 -1855 1704 17 6 1202 1401 266 52 12 chr9 80953425 80953828 -43122344 + MTD LTR MaLR 1 419 0 6 1202 3052 181 11 3 chr9 80955339 80955911 -43120261 - Lx2 LINE L1 0 6997 6422 6 1202 2794 158 0 14 chr9 80955912 80956414 -43119758 + L1_Mur2 LINE L1 3716 4210 -1667 6 1202 12184 21 5 0 chr9 80956419 80957856 -43118316 - L1_Mm LINE L1 -847 5036 3593 6 1202 36655 33 1 7 chr9 80957856 80963033 -43113139 + L1Md_A LINE L1 451 5586 -297 6 1202 8410 33 1 0 chr9 80963033 80964027 -43112145 + L1Md_A LINE L1 5587 6581 -1 6 1202 8736 170 6 25 chr9 80964049 80965682 -43110490 + L1_Mur2 LINE L1 4214 5815 -62 6 1202 930 214 68 40 chr9 80965679 80965927 -43110245 - RMER1C Other Other -48 1294 1040 6 1202 4784 53 5 3 chr9 80965956 80966559 -43109613 - L1Md_F2 LINE L1 -13 6569 5966 6 1202 26 64 0 0 chr9 80966776 80966823 -43109349 + AT_rich Low_complexity Low_complexity 1 47 0 6 1202 1266 290 85 11 chr9 80966844 80967290 -43108882 - RMER1C Other Other -311 1031 553 6 1202 182 37 37 0 chr9 80970528 80970555 -43105617 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1202 246 32 0 0 chr9 80970613 80970644 -43105528 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 6 1202 256 320 0 0 chr9 80970746 80970824 -43105348 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 6 1202 1170 74 0 0 chr9 80971363 80971511 -43104661 + B1_Mus1 SINE Alu 1 148 0 6 1202 291 267 55 11 chr9 80972652 80972743 -43103429 - L2 LINE L2 -600 2819 2725 6 1202 450 0 0 0 chr9 80972754 80972804 -43103368 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 6 1202 599 75 0 11 chr9 80972899 80972994 -43103178 + (TC)n Simple_repeat Simple_repeat 1 94 0 6 1202 387 0 0 0 chr9 80972994 80973037 -43103135 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1202 596 297 16 27 chr9 80973125 80973312 -43102860 + Lx9 LINE L1 6607 6791 -853 6 1202 1625 239 66 114 chr9 80973316 80973893 -43102279 - RMER15 LTR ERVL 0 575 27 6 1202 227 291 70 0 chr9 80973912 80973998 -43102174 - RMER15 LTR ERVL -482 93 2 6 1202 537 284 0 21 chr9 80974014 80974158 -43102014 + Lx9 LINE L1 6801 6941 -703 6 1202 1856 303 70 60 chr9 80974576 80975678 -43100494 - Lx6 LINE L1 -72 7388 5941 6 1202 3085 236 46 17 chr9 80975926 80977069 -43099103 + L1VL4 LINE L1 827 2051 -3835 6 1202 396 0 0 0 chr9 80977070 80977114 -43099058 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1202 7030 162 41 37 chr9 80977127 80978558 -43097614 + L1VL4 LINE L1 3304 4740 -1137 6 1202 6516 75 2 1 chr9 80978555 80979395 -43096777 - L1_Mus3 LINE L1 -158 6480 5640 6 1202 1098 73 12 12 chr9 80979395 80979562 -43096610 + L1_Mus3 LINE L1 6471 6637 -1 6 1202 26 30 0 0 chr9 80979670 80979703 -43096469 + AT_rich Low_complexity Low_complexity 1 33 0 6 1202 3522 145 2 0 chr9 80979708 80980273 -43095899 + L1VL4 LINE L1 4739 5304 -573 6 1202 3917 192 72 15 chr9 80980275 80981096 -43095076 + Lx4B LINE L1 6187 7054 -4 6 1202 24 0 0 0 chr9 80981142 80981166 -43095006 + AT_rich Low_complexity Low_complexity 1 24 0 6 1202 21 0 0 0 chr9 80981690 80981711 -43094461 + AT_rich Low_complexity Low_complexity 1 21 0 6 1202 1243 223 0 24 chr9 80983261 80983509 -43092663 - Lx4A LINE L1 -2 7056 6815 6 1202 21 0 0 0 chr9 80983541 80983562 -43092610 + AT_rich Low_complexity Low_complexity 1 21 0 6 1202 493 284 101 17 chr9 80983666 80983840 -43092332 + B3A SINE B2 33 208 -8 6 1202 221 378 95 56 chr9 80984071 80984197 -43091975 - ID_B1 SINE B4 -15 209 79 6 1202 21 82 0 0 chr9 80984294 80984343 -43091829 + AT_rich Low_complexity Low_complexity 1 49 0 6 1202 344 117 321 18 chr9 80984548 80984660 -43091512 - B2_Mm2 SINE B2 -3 192 47 6 1202 1177 120 11 0 chr9 80984692 80984867 -43091305 - B2_Mm1t SINE B2 -14 179 3 6 1202 658 260 147 63 chr9 80985805 80986010 -43090162 + MTD LTR MaLR 192 383 -36 6 1202 244 369 60 0 chr9 80986473 80986557 -43089615 + MamRep1894 DNA hAT 1 89 -34 6 1202 2958 110 2 0 chr9 80986719 80987155 -43089017 - Lx4A LINE L1 -396 5481 5045 6 1202 8154 144 43 15 chr9 80987154 80988693 -43087479 + Lx4A LINE L1 5458 7056 -2 6 1202 231 36 0 0 chr9 80988782 80988810 -43087362 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1202 4768 71 25 3 chr9 80991461 80992099 -43084073 + L1Md_F2 LINE L1 5919 6570 -12 6 1202 740 269 51 20 chr9 80992147 80992344 -43083828 + B3 SINE B2 14 216 0 6 1202 210 128 0 0 chr9 80992960 80992999 -43083173 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1202 410 330 88 45 chr9 80993484 80993792 -43082380 - LTR80B LTR ERVL -194 390 70 6 1202 243 303 17 52 chr9 80993850 80993965 -43082207 - MIRb SINE MIR -35 233 123 6 1202 688 247 118 0 chr9 80994200 80994386 -43081786 + B3 SINE B2 3 210 -6 6 1202 3287 29 0 3 chr9 80994546 80994933 -43081239 - L1Md_F3 LINE L1 -192 6392 6007 6 1202 1272 39 5 92 chr9 80994933 80995129 -43081043 + L1Md_F3 LINE L1 6391 6569 -15 6 1202 911 51 1 1 chr9 80995152 80995270 -43080902 + L1Md_F3 LINE L1 6288 6392 -192 6 1202 760 264 24 106 chr9 80995408 80995616 -43080556 - B3 SINE B2 -2 193 3 6 1202 243 303 17 52 chr9 80995851 80995966 -43080206 + MIRb SINE MIR 123 233 -35 6 1202 643 276 96 25 chr9 80996374 80996571 -43079601 - B3 SINE B2 0 216 6 6 1202 624 265 47 19 chr9 80996861 80997119 -43079053 + L1MDa LINE L1 976 1240 -5393 7 1202 238 343 19 19 chr9 80997119 80997223 -43078949 + PB1D10 SINE Alu 1 104 -13 7 1202 1637 182 97 35 chr9 80997474 80997845 -43078327 + ORR1B1 LTR MaLR 1 394 0 7 1202 319 219 37 0 chr9 80997845 80997927 -43078245 + ORR1B1-int LTR MaLR 1 85 -1878 7 1202 632 164 62 8 chr9 80997919 80998048 -43078124 + ORR1B1-int LTR MaLR 247 382 -1581 7 1202 2392 164 174 17 chr9 80998051 80998864 -43077308 + ORR1B1-int LTR MaLR 968 1761 -202 7 1202 1930 181 36 21 chr9 80998864 80999252 -43076920 + ORR1B1 LTR MaLR 1 394 0 7 1202 628 122 8 31 chr9 80999321 80999448 -43076724 - L1_Mus4 LINE L1 -1 6635 6512 7 1202 335 309 125 88 chr9 80999463 80999782 -43076390 + L1MDa LINE L1 1362 1692 -4941 7 1202 1318 89 5 45 chr9 80999800 81000000 -43076172 + L1_Mus2 LINE L1 6208 6399 -167 7 1202 1093 58 78 0 chr9 81000000 81000154 -43076018 + L1_Mus2 LINE L1 6400 6565 -1 1 1202 282 29 0 0 chr9 81000295 81000330 -43075842 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1202 191 36 0 35 chr9 81000330 81000359 -43075813 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1202 342 0 0 0 chr9 81000392 81000430 -43075742 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1202 564 200 0 0 chr9 81000437 81000557 -43075615 + (CA)n Simple_repeat Simple_repeat 2 121 0 5 1202 306 249 193 12 chr9 81000558 81000729 -43075443 - Lx9 LINE L1 -127 7517 7316 6 1202 625 164 49 8 chr9 81000822 81000945 -43075227 + ORR1A2 LTR MaLR 1 128 -199 7 1202 1347 312 14 76 chr9 81000949 81001462 -43074710 - MTD-int LTR MaLR -541 717 237 8 1202 7050 88 24 0 chr9 81001464 81001986 -43074186 - Lx3_Mus LINE L1 -431 6578 6051 9 1202 180 0 0 0 chr9 81001986 81002006 -43074166 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 1 150 7050 77 29 3 chr9 81002006 81002965 -43073207 - Lx3_Mus LINE L1 -959 6050 5057 9 1203 3031 92 7 0 chr9 81002965 81003388 -43072784 + Lx3_Mus LINE L1 6578 7003 -6 1 1203 733 262 64 27 chr9 81003417 81003637 -43072535 - MTD-int LTR MaLR -1029 229 2 8 1203 356 173 0 24 chr9 81003653 81003736 -43072436 + G-rich Low_complexity Low_complexity 6 86 0 1 1203 286 291 585 10 chr9 81003761 81003965 -43072207 - MTD LTR MaLR -89 332 12 8 1203 481 214 29 0 chr9 81004299 81004402 -43071770 + Lx9 LINE L1 6945 7050 -594 1 1203 907 122 23 6 chr9 81004419 81004592 -43071580 + GA-rich Low_complexity Low_complexity 3 178 0 1 1203 621 0 0 0 chr9 81004592 81004661 -43071511 + (GAA)n Simple_repeat Simple_repeat 2 70 0 1 1203 282 307 164 30 chr9 81004817 81005451 -43070721 + L1MDa LINE L1 1811 2529 -4104 1 1203 421 287 80 23 chr9 81005532 81005832 -43070340 + L1MDa LINE L1 2668 2984 -3553 1 1203 442 264 89 24 chr9 81006153 81006444 -43069728 + L1MDa LINE L1 3510 3819 -2718 1 1203 33 25 0 0 chr9 81006504 81006544 -43069628 + AT_rich Low_complexity Low_complexity 1 40 0 1 1203 357 288 36 30 chr9 81006657 81006822 -43069350 - L1M2 LINE L1 -1214 4929 4764 1 1203 546 204 33 20 chr9 81006852 81007002 -43069170 - Lx9 LINE L1 -12 7632 7481 1 1203 213 39 0 0 chr9 81007012 81007038 -43069134 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1203 859 305 108 41 chr9 81007107 81007973 -43068199 - L1M2 LINE L1 -1830 4313 3350 1 1203 1296 275 29 24 chr9 81007973 81008390 -43067782 - MTD LTR MaLR 0 419 1 2 1203 765 305 108 41 chr9 81008390 81008434 -43067738 - L1M2 LINE L1 -2531 3349 3311 1 1203 2866 156 10 2 chr9 81008432 81008914 -43067258 - Lx2B LINE L1 -493 6507 6022 2 1203 3014 123 39 0 chr9 81008915 81009401 -43066771 + Lx2B LINE L1 6493 6997 -3 2 1203 241 167 0 0 chr9 81009818 81009860 -43066312 + Charlie4 DNA MER1_type 434 475 -1486 2 1203 213 290 14 14 chr9 81010483 81010553 -43065619 + CT-rich Low_complexity Low_complexity 1 70 0 2 1203 717 102 0 0 chr9 81010582 81010690 -43065482 + (GA)n Simple_repeat Simple_repeat 1 108 0 2 1203 222 62 0 0 chr9 81010729 81010761 -43065411 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1203 1335 42 0 0 chr9 81010768 81010936 -43065236 - L1Md_F3 LINE L1 -16 6568 6401 2 1203 236 340 53 65 chr9 81011703 81011873 -43064299 - LTR41B LTR ERVL -584 174 7 2 1203 258 32 0 0 chr9 81013179 81013210 -43062962 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1203 768 77 0 0 chr9 81013210 81013313 -43062859 + (GA)n Simple_repeat Simple_repeat 1 104 0 3 1203 3162 64 2 9 chr9 81014067 81014491 -43061681 - BGLII LTR ERVK 0 421 1 3 1203 182 105 26 0 chr9 81015001 81015039 -43061133 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1203 1174 330 53 77 chr9 81015946 81016835 -43059337 - Lx7 LINE L1 -4 7469 6596 3 1203 1187 280 66 39 chr9 81016960 81017694 -43058478 - Lx7 LINE L1 -1452 6244 5480 3 1203 3728 247 60 14 chr9 81017709 81018884 -43057288 + L1_Mur3 LINE L1 3862 5090 -790 3 1203 196 327 67 9 chr9 81018948 81019053 -43057119 - MIRm SINE MIR -3 273 163 3 1203 621 144 25 12 chr9 81019305 81019721 -43056451 + (CA)n Simple_repeat Simple_repeat 1 421 0 3 1203 286 170 18 36 chr9 81019721 81019776 -43056396 - RSINE1 SINE B4 -46 119 66 3 1203 322 124 57 76 chr9 81020575 81020680 -43055492 + Lx9 LINE L1 7416 7518 -126 3 1203 252 246 0 28 chr9 81020680 81020751 -43055421 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1203 435 236 14 14 chr9 81020751 81020893 -43055279 + Lx9 LINE L1 7458 7599 -45 4 1203 8457 100 60 24 chr9 81022387 81023775 -43052397 - Lx3_Mus LINE L1 -6 7003 5573 4 1203 1227 147 0 36 chr9 81023775 81024025 -43052147 - L1Md_F2 LINE L1 0 6582 6365 4 1203 3246 72 64 19 chr9 81024025 81024172 -43052000 - Lx3_Mus LINE L1 -314 5572 5401 4 1203 545 291 62 68 chr9 81025142 81025334 -43050838 - B3A SINE B2 -2 196 6 4 1203 313 288 137 110 chr9 81025533 81025825 -43050347 - MLT1A1 LTR MaLR -38 370 71 4 1203 1357 224 56 38 chr9 81028213 81028318 -43047854 - Lx5 LINE L1 -5 7045 6930 4 1203 3857 124 96 133 chr9 81028318 81029259 -43046913 + RMER17A2 LTR ERVK 1 906 0 4 1203 1357 224 56 38 chr9 81029259 81029473 -43046699 - Lx5 LINE L1 -121 6929 6720 4 1203 523 271 67 15 chr9 81030209 81030404 -43045768 - B3 SINE B2 -3 213 9 4 1203 22 35 0 0 chr9 81032024 81032053 -43044119 + AT_rich Low_complexity Low_complexity 1 29 0 4 1203 279 0 0 0 chr9 81034751 81034782 -43041390 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1203 796 273 50 19 chr9 81035287 81035545 -43040627 + ORR1D2 LTR MaLR 105 370 0 5 1203 262 260 87 0 chr9 81035607 81035711 -43040461 + L1MA6 LINE L1 6026 6138 -162 5 1203 240 291 39 0 chr9 81035777 81035880 -43040292 + L1MA6 LINE L1 6161 6267 -33 5 1203 300 326 112 35 chr9 81035911 81036143 -43040029 + L1M5 LINE L1 2795 3044 -3102 5 1203 2817 204 127 7 chr9 81036153 81036844 -43039328 - Lx3C LINE L1 -6 6970 6197 5 1203 354 45 0 0 chr9 81036867 81036911 -43039261 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1203 22 35 0 0 chr9 81036952 81036981 -43039191 + AT_rich Low_complexity Low_complexity 1 29 0 5 1203 654 321 82 25 chr9 81037070 81037510 -43038662 + Lx8 LINE L1 6988 7467 -6 5 1203 317 279 181 16 chr9 81037610 81037792 -43038380 + L1MB3 LINE L1 3517 3728 -2412 5 1203 1295 295 177 11 chr9 81038014 81038273 -43037899 - Lx8 LINE L1 -314 7159 6862 5 1203 357 24 0 0 chr9 81038273 81038315 -43037857 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1203 1295 295 177 11 chr9 81038315 81038678 -43037494 - Lx8 LINE L1 -612 6861 6435 5 1203 435 282 41 78 chr9 81038679 81038948 -43037224 + Lx8 LINE L1 7195 7453 -20 6 1203 22 35 0 0 chr9 81038956 81038985 -43037187 + AT_rich Low_complexity Low_complexity 1 29 0 6 1203 699 304 164 35 chr9 81039148 81039969 -43036203 + L1MB3 LINE L1 4364 5290 -856 5 1203 359 287 21 43 chr9 81040081 81040247 -43035925 + L1MB3 LINE L1 5424 5584 -587 5 1203 387 0 0 0 chr9 81040341 81040384 -43035788 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1203 443 281 113 76 chr9 81040420 81040801 -43035371 + L1MB3 LINE L1 5777 6171 -12 5 1203 973 227 13 30 chr9 81041481 81041717 -43034455 - Lx4B LINE L1 -7 7051 6820 6 1203 1302 31 24 0 chr9 81042876 81043133 -43033039 + (TCTCCC)n Simple_repeat Simple_repeat 1 263 0 6 1203 207 188 0 0 chr9 81043135 81043183 -43032989 + CT-rich Low_complexity Low_complexity 1 48 0 6 1203 642 257 96 5 chr9 81043184 81043372 -43032800 - ID_B1 SINE B4 -15 209 5 6 1203 513 131 0 0 chr9 81043541 81043625 -43032547 + (TA)n Simple_repeat Simple_repeat 1 84 0 6 1203 305 278 125 31 chr9 81043656 81043816 -43032356 - Helitron1Na_Mam RC Helitron -67 995 821 6 1203 705 264 43 53 chr9 81044188 81044396 -43031776 + MTEa LTR MaLR 1 206 -173 6 1203 340 231 45 56 chr9 81045041 81045156 -43031016 + RLTR11B LTR ERVK 1 107 -346 7 1203 478 156 0 0 chr9 81045288 81045365 -43030807 + MTC LTR MaLR 1 77 -344 7 1203 1994 155 25 0 chr9 81045370 81045686 -43030486 - ORR1A4 LTR MaLR -5 324 1 7 1203 614 256 43 61 chr9 81045688 81046144 -43030028 + RLTR11B LTR ERVK 61 501 -27 7 1203 21 36 0 0 chr9 81046460 81046488 -43029684 + AT_rich Low_complexity Low_complexity 1 28 0 7 1203 204 237 0 17 chr9 81047365 81047425 -43028747 + A-rich Low_complexity Low_complexity 5 63 0 7 1203 371 20 0 38 chr9 81047452 81047505 -43028667 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 7 1203 708 299 69 59 chr9 81047703 81047991 -43028181 + ORR1D2 LTR MaLR 1 291 -79 7 1203 2869 170 77 18 chr9 81048398 81048800 -43027372 - RMER6A LTR ERVK -123 633 204 7 1203 3609 28 0 14 chr9 81048800 81049242 -43026930 - L1Md_F3 LINE L1 -14 6570 6135 7 1203 2869 170 77 18 chr9 81049242 81049437 -43026735 - RMER6A LTR ERVK -553 203 3 7 1203 1216 269 55 43 chr9 81049515 81049894 -43026278 + MTD LTR MaLR 11 403 -16 7 1203 3998 228 67 9 chr9 81050075 81050468 -43025704 + Lx2B LINE L1 5928 6346 -654 8 1203 513 0 0 0 chr9 81050468 81050525 -43025647 + (TA)n Simple_repeat Simple_repeat 2 58 0 8 1203 3998 228 67 9 chr9 81050525 81051136 -43025036 + Lx2B LINE L1 6347 6990 -10 8 1203 29 0 0 0 chr9 81051189 81051218 -43024954 + AT_rich Low_complexity Low_complexity 1 29 0 8 1203 21 0 0 0 chr9 81051494 81051515 -43024657 + AT_rich Low_complexity Low_complexity 1 21 0 8 1203 39 74 0 0 chr9 81053190 81053271 -43022901 + AT_rich Low_complexity Low_complexity 1 81 0 8 1203 2294 94 68 3 chr9 81053271 81053622 -43022550 - Lx3_Mus LINE L1 -8 7001 6628 8 1203 2577 75 0 3 chr9 81053622 81053957 -43022215 + Lx3_Mus LINE L1 6305 6638 -371 8 1203 285 286 0 0 chr9 81054079 81054149 -43022023 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1203 273 309 55 58 chr9 81054971 81055280 -43020892 + L1M2 LINE L1 4178 4485 -1655 8 1203 1103 95 0 0 chr9 81055282 81055430 -43020742 + B1_Mus1 SINE Alu 1 148 0 8 1203 285 98 0 0 chr9 81055430 81055471 -43020701 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 8 1203 1017 103 0 27 chr9 81055520 81055670 -43020502 + B1_Mus1 SINE Alu 2 147 -1 9 1203 310 288 74 25 chr9 81055694 81055815 -43020357 + L1M2 LINE L1 4474 4600 -1543 8 1203 7000 100 3 52 chr9 81055891 81056991 -43019181 - L1_Mus4 LINE L1 -3 6633 5588 9 1203 23 92 0 0 chr9 81058355 81058420 -43017752 + AT_rich Low_complexity Low_complexity 1 65 0 9 1203 289 372 60 47 chr9 81058713 81059094 -43017078 + L1M4 LINE L1 101 486 -6056 9 1203 180 0 0 0 chr9 81059559 81059579 -43016593 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1203 2375 187 159 40 chr9 81059761 81060117 -43016055 - RMER17A2 LTR ERVK -152 754 347 9 1203 1230 67 0 0 chr9 81060117 81060282 -43015890 + (GGGAGA)n Simple_repeat Simple_repeat 6 170 0 9 1203 2375 187 159 40 chr9 81060282 81060599 -43015573 - RMER17A2 LTR ERVK -560 346 1 9 1203 4538 108 8 36 chr9 81060600 81061058 -43015114 - MusHAL1 LINE L1 -1143 1569 1121 9 1203 6376 55 6 0 chr9 81061058 81061852 -43014320 - L1_Mus1 LINE L1 0 6567 5769 9 1203 4538 108 8 36 chr9 81061852 81062165 -43014007 - MusHAL1 LINE L1 -1592 1120 820 9 1203 2240 123 12 51 chr9 81062165 81062577 -43013595 + Lx LINE L1 6259 6654 0 9 1203 431 310 44 4 chr9 81062727 81062976 -43013196 + L1M4 LINE L1 4558 4816 -1330 1 1203 322 369 0 0 chr9 81063212 81063315 -43012857 + PB1D10 SINE Alu 13 115 -2 1 1203 3494 38 1 0 chr9 81064722 81065215 -43010957 + L1Md_F3 LINE L1 5501 5994 -590 1 1203 2566 49 0 3 chr9 81065215 81065541 -43010631 + L1Md_F3 LINE L1 6258 6582 -2 1 1203 390 21 0 0 chr9 81066362 81066409 -43009763 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1203 591 15 0 0 chr9 81066409 81066476 -43009696 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1203 447 299 93 57 chr9 81066477 81066868 -43009304 - MLT2B1 LTR ERVL -62 494 3 1 1203 1264 176 68 8 chr9 81066894 81067157 -43009015 + RMER19C LTR ERVK 1 279 -332 1 1203 724 146 16 0 chr9 81067214 81067337 -43008835 + B1_Mus1 SINE Alu 24 148 0 1 1203 220 19 115 0 chr9 81067337 81067389 -43008783 + (CAAA)n Simple_repeat Simple_repeat 4 61 0 1 1203 856 231 42 42 chr9 81067433 81067623 -43008549 + RMER19C LTR ERVK 284 473 -138 1 1203 685 261 12 0 chr9 81068864 81069025 -43007147 + Lx8 LINE L1 7175 7337 -136 1 1203 263 242 117 78 chr9 81070451 81070554 -43005618 - Lx9 LINE L1 -1169 6304 6198 1 1203 513 187 0 46 chr9 81070572 81070746 -43005426 + (CATATA)n Simple_repeat Simple_repeat 6 171 0 1 1203 1118 259 78 23 chr9 81070748 81071341 -43004831 - Lx9 LINE L1 -1508 6188 5532 1 1203 23 68 0 0 chr9 81071360 81071404 -43004768 + AT_rich Low_complexity Low_complexity 1 44 0 1 1203 644 245 157 3 chr9 81071721 81071885 -43004287 - Lx9 LINE L1 0 7644 7457 1 1203 378 0 0 0 chr9 81071885 81071927 -43004245 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1203 644 245 157 3 chr9 81071927 81071949 -43004223 - Lx9 LINE L1 -188 7456 7419 1 1203 357 125 0 0 chr9 81071949 81072005 -43004167 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1203 644 245 157 3 chr9 81072005 81072148 -43004024 - Lx9 LINE L1 -226 7418 7265 1 1203 2062 213 77 9 chr9 81072161 81072616 -43003556 + Lx9 LINE L1 6487 6972 -672 1 1203 1546 199 257 9 chr9 81072617 81073069 -43003103 + Lx4B LINE L1 6478 7041 -17 1 1203 311 321 27 0 chr9 81073337 81073449 -43002723 + Tigger5 DNA MER2_type 8 122 -2284 1 1203 13554 77 14 99 chr9 81073510 81074240 -43001932 + L1_Mur1 LINE L1 2157 2844 -3042 1 1203 910 110 73 0 chr9 81074240 81074376 -43001796 - B1_Mus1 SINE Alu -1 147 2 1 1203 962 149 0 7 chr9 81074378 81074533 -43001639 - B2_Mm2 SINE B2 -41 154 1 1 1203 13554 77 14 99 chr9 81074533 81074580 -43001592 + L1_Mur1 LINE L1 2847 2882 -3004 1 1203 243 0 0 0 chr9 81074580 81074607 -43001565 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1203 13554 77 14 99 chr9 81074607 81075182 -43000990 + L1_Mur1 LINE L1 2883 3483 -2403 1 1203 1244 40 0 0 chr9 81075182 81075330 -43000842 + B1_Mus1 SINE Alu 1 148 0 1 1203 402 21 0 0 chr9 81075333 81075380 -43000792 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 1 1203 13554 77 14 99 chr9 81075380 81075400 -43000772 + L1_Mur1 LINE L1 3484 3491 -2395 1 1203 277 22 21 43 chr9 81075400 81075447 -43000725 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 1203 13554 77 14 99 chr9 81075447 81076259 -42999913 + L1_Mur1 LINE L1 3492 4305 -1581 1 1203 35109 49 0 5 chr9 81076259 81081748 -42994424 + L1Md_T LINE L1 30 5589 -297 1 1203 8301 40 0 0 chr9 81081748 81082744 -42993428 + L1Md_T LINE L1 5590 6585 0 1 1203 1339 96 78 4 chr9 81082754 81082985 -42993187 + L1_Mur1 LINE L1 4288 4535 -1351 1 1203 2544 211 62 7 chr9 81082969 81083533 -42992639 + Lx2B LINE L1 6405 6999 -1 1 1203 322 272 21 32 chr9 81083582 81083677 -42992495 + Tigger5 DNA MER2_type 2308 2401 -5 1 1203 1292 231 0 42 chr9 81084475 81084764 -42991408 + Lx9 LINE L1 6956 7232 -412 1 1203 772 150 7 21 chr9 81084871 81085014 -42991158 + B1_Mur4 SINE Alu 10 150 0 1 1203 225 0 0 0 chr9 81085050 81085075 -42991097 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 1203 372 304 128 20 chr9 81085302 81085701 -42990471 + L1M3 LINE L1 4671 5112 -1028 1 1203 21 57 0 0 chr9 81086971 81087006 -42989166 + AT_rich Low_complexity Low_complexity 1 35 0 1 1203 26 30 0 0 chr9 81087868 81087901 -42988271 + AT_rich Low_complexity Low_complexity 1 33 0 1 1203 5909 136 16 1 chr9 81087988 81088936 -42987236 - L1_Mm LINE L1 -212 5671 4710 1 1203 6706 88 56 4 chr9 81088933 81089890 -42986282 + L1_Mus3 LINE L1 5626 6632 -6 1 1203 2438 219 64 87 chr9 81090373 81090864 -42985308 + RMER1B Other Other 408 927 -139 1 1203 375 23 0 0 chr9 81090864 81090908 -42985264 + (TGG)n Simple_repeat Simple_repeat 3 46 0 1 1203 2438 219 64 87 chr9 81090908 81091091 -42985081 + RMER1B Other Other 928 1066 0 1 1203 258 291 60 11 chr9 81091447 81091631 -42984541 + RMER17D LTR ERVK 309 501 -388 1 1203 314 289 66 19 chr9 81091680 81091786 -42984386 - ID_B1 SINE B4 -5 219 109 1 1203 258 261 29 14 chr9 81091776 81091846 -42984326 - ID4 SINE ID -10 73 3 1 1203 221 136 22 22 chr9 81092120 81092165 -42984007 + (TAA)n Simple_repeat Simple_repeat 3 47 0 1 1203 30 0 0 0 chr9 81092508 81092538 -42983634 + AT_rich Low_complexity Low_complexity 1 30 0 1 1203 570 200 125 0 chr9 81092790 81092910 -42983262 - ORR1C1 LTR MaLR -10 368 234 1 1203 311 140 0 0 chr9 81092899 81092949 -42983223 - ORR1C1 LTR MaLR -334 50 1 1 1203 314 256 48 123 chr9 81093429 81093656 -42982516 + L1MD LINE L1 3624 3833 -2313 1 1203 860 19 9 0 chr9 81094955 81095061 -42981111 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 1 1203 416 357 7 0 chr9 81095172 81095326 -42980846 - RSINE1 SINE B4 -8 157 3 1 1203 531 31 0 0 chr9 81096002 81096067 -42980105 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 1203 250 79 79 0 chr9 81096071 81096134 -42980038 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1203 27 49 0 0 chr9 81096134 81096175 -42979997 + AT_rich Low_complexity Low_complexity 1 41 0 1 1203 578 165 25 57 chr9 81096961 81097083 -42979089 - PB1D9 SINE Alu -1 119 2 1 1203 308 339 82 31 chr9 81097308 81097503 -42978669 - L1MCc LINE L1 -5364 1059 855 1 1203 6506 170 43 16 chr9 81098625 81099959 -42976213 - L1_Mur2 LINE L1 -1076 4801 3431 1 1203 1562 54 5 0 chr9 81100367 81100571 -42975601 + L1Md_A LINE L1 6378 6582 0 1 1203 2671 119 41 12 chr9 81100875 81101290 -42974882 - Lx3B LINE L1 -422 6551 6125 1 1203 2624 134 7 14 chr9 81101291 81101721 -42974451 + Lx3A LINE L1 6547 6973 -8 1 1203 603 40 0 0 chr9 81101801 81101875 -42974297 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1203 180 0 0 0 chr9 81102101 81102121 -42974051 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1 1203 9310 175 49 32 chr9 81102344 81104645 -42971527 - L1_Mur2 LINE L1 -2596 3281 892 1 1203 6955 119 28 3 chr9 81105269 81106658 -42969514 + Lx LINE L1 5217 6646 -8 1 1203 612 107 0 0 chr9 81107001 81107113 -42969059 + (TC)n Simple_repeat Simple_repeat 1 112 0 1 1203 288 0 0 0 chr9 81107113 81107145 -42969027 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1203 468 95 36 0 chr9 81107471 81107555 -42968617 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1203 1127 63 0 0 chr9 81110219 81110362 -42965810 - B1_Mus1 SINE Alu -1 147 5 1 1203 399 320 19 0 chr9 81110920 81111023 -42965149 - B3A SINE B2 -83 115 11 1 1203 180 97 0 0 chr9 81111154 81111185 -42964987 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1 1203 447 19 0 0 chr9 81111188 81111240 -42964932 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1203 2952 317 51 27 chr9 81111320 81112500 -42963672 - Lx7 LINE L1 -361 7335 6128 1 1203 24 32 0 0 chr9 81112626 81112657 -42963515 + AT_rich Low_complexity Low_complexity 1 31 0 1 1203 610 301 101 76 chr9 81112730 81113221 -42962951 - MER31A LTR ERV1 0 485 1 1 1203 244 260 0 0 chr9 81113715 81113765 -42962407 + G-rich Low_complexity Low_complexity 5 54 0 1 1203 360 0 0 0 chr9 81114401 81114441 -42961731 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1203 188 111 28 0 chr9 81114441 81114477 -42961695 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 1 1203 2925 204 88 13 chr9 81114827 81115658 -42960514 - L1_Mur3 LINE L1 -3092 2788 1896 1 1203 279 358 58 0 chr9 81115647 81115820 -42960352 - L1_Mur3 LINE L1 -6963 765 583 1 1203 3629 221 132 9 chr9 81115974 81116968 -42959204 - Lx2B LINE L1 -5 6995 5880 1 1203 3081 229 99 44 chr9 81117266 81118127 -42958045 + RMER13B LTR ERVK 1 908 0 1 1203 354 169 0 0 chr9 81118408 81118473 -42957699 + GA-rich Low_complexity Low_complexity 2 66 0 1 1203 2018 203 4 63 chr9 81118564 81118689 -42957483 + Lx3A LINE L1 871 981 -5676 1 1203 1124 71 0 0 chr9 81118689 81118830 -42957342 + B1_Mus1 SINE Alu 1 141 -7 1 1203 432 0 0 0 chr9 81118834 81118882 -42957290 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1203 23074 175 25 26 chr9 81118882 81119978 -42956194 + Lx3A LINE L1 982 2065 -3821 1 1203 333 0 0 0 chr9 81119978 81120015 -42956157 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1203 23074 168 30 16 chr9 81120015 81122009 -42954163 + Lx3A LINE L1 2066 4121 -1765 1 1203 228 35 0 0 chr9 81122009 81122038 -42954134 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1203 23074 182 62 23 chr9 81122038 81124755 -42951417 + Lx3A LINE L1 4122 7055 -3 1 1203 6048 38 0 0 chr9 81125236 81125953 -42950219 + L1Md_F2 LINE L1 5862 6578 -4 1 1203 852 26 8 17 chr9 81126720 81126837 -42949335 + (TCTA)n Simple_repeat Simple_repeat 4 119 0 1 1203 266 287 0 0 chr9 81126869 81126956 -42949216 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 1203 5332 38 2 0 chr9 81127072 81127711 -42948461 - L1Md_T LINE L1 0 6582 5943 1 1203 316 342 69 27 chr9 81128022 81128283 -42947889 - B4A SINE B4 -18 274 3 1 1203 185 282 44 56 chr9 81128921 81129011 -42947161 - L4 LINE RTE -592 1437 1349 1 1203 696 202 28 0 chr9 81131021 81131199 -42944973 + Lx2A1 LINE L1 6823 7005 -3 1 1203 23 0 0 0 chr9 81131429 81131452 -42944720 + AT_rich Low_complexity Low_complexity 1 23 0 1 1203 26 64 0 0 chr9 81132670 81132717 -42943455 + AT_rich Low_complexity Low_complexity 1 47 0 1 1204 2471 52 0 81 chr9 81133826 81134185 -42941987 + L1Md_F3 LINE L1 6241 6570 -14 1 1204 42 20 0 0 chr9 81135214 81135263 -42940909 + AT_rich Low_complexity Low_complexity 1 49 0 1 1204 719 121 25 6 chr9 81135431 81135589 -42940583 + (TCTA)n Simple_repeat Simple_repeat 1 161 0 1 1204 948 65 0 0 chr9 81135991 81136115 -42940057 + (TTTTC)n Simple_repeat Simple_repeat 2 125 0 1 1204 7093 118 25 4 chr9 81136117 81137535 -42938637 - L1_Mus4 LINE L1 -14 6622 5169 1 1204 2795 177 11 18 chr9 81137536 81138089 -42938083 + L1_Mur2 LINE L1 4646 5194 -683 1 1204 3282 40 12 0 chr9 81138838 81139239 -42936933 - L1Md_F3 LINE L1 -1 6583 6178 1 1204 22 56 0 0 chr9 81139951 81139987 -42936185 + AT_rich Low_complexity Low_complexity 1 36 0 1 1204 608 370 20 54 chr9 81140061 81140358 -42935814 + B4A SINE B4 2 288 -4 1 1204 379 279 35 28 chr9 81140525 81140669 -42935503 - Lx7 LINE L1 -916 6780 6636 1 1204 285 212 0 0 chr9 81140711 81140768 -42935404 - Lx7 LINE L1 -837 6636 6584 1 1204 242 278 98 59 chr9 81142336 81142489 -42933683 + MLT1D LTR MaLR 17 175 -452 2 1204 279 311 56 0 chr9 81142537 81142654 -42933518 + MLT1D LTR MaLR 380 485 -20 2 1204 19567 17 1 0 chr9 81143991 81146950 -42929222 - L1Md_A LINE L1 -1 6581 3620 2 1204 2081 122 32 193 chr9 81146973 81147539 -42928633 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1204 6703 41 3 27 chr9 81147542 81148390 -42927782 - IAPEz-int LTR ERVK -3 6478 5651 2 1204 2653 70 0 3 chr9 81148383 81148726 -42927446 - IAPEz-int LTR ERVK -4781 1700 1359 2 1204 3440 72 6 16 chr9 81148726 81149354 -42926818 - IAPEz-int LTR ERVK -5819 662 116 2 1204 1159 121 26 36 chr9 81149339 81149625 -42926547 - MMERVK10C-int LTR ERVK -7312 269 67 2 1204 227 267 0 0 chr9 81149625 81149670 -42926502 - RLTR27 LTR ERVK -34 275 231 2 1204 445 132 0 159 chr9 81149670 81149796 -42926376 - MMERVK10C-int LTR ERVK -6358 123 18 2 1204 352 122 81 0 chr9 81149790 81149864 -42926308 - MMERVK10C-int LTR ERVK -1905 82 3 2 1204 20576 16 0 2 chr9 81149866 81149889 -42926283 - L1Md_A LINE L1 -2235 3648 3626 2 1204 2069 128 23 192 chr9 81149889 81150461 -42925711 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1204 20576 19 2 13 chr9 81150461 81153894 -42922278 - L1Md_A LINE L1 -2258 3625 232 2 1204 1168 304 55 15 chr9 81154437 81154833 -42921339 + MTD LTR MaLR 7 401 -18 2 1204 207 125 0 0 chr9 81154912 81154952 -42921220 + (TCC)n Simple_repeat Simple_repeat 3 42 0 2 1204 225 0 0 0 chr9 81155373 81155398 -42920774 + (ATG)n Simple_repeat Simple_repeat 3 27 0 2 1204 466 301 48 42 chr9 81155437 81155750 -42920422 + L1MA6 LINE L1 5942 6258 -42 2 1204 2608 85 28 25 chr9 81155750 81156149 -42920023 - MTB LTR MaLR 0 400 1 2 1204 466 301 48 42 chr9 81156149 81156165 -42920007 + L1MA6 LINE L1 6259 6273 -27 2 1204 574 237 22 7 chr9 81158188 81158324 -42917848 - Lx9 LINE L1 -179 7465 7328 2 1204 790 251 166 23 chr9 81159643 81159852 -42916320 - Lx2B LINE L1 -4 6996 6746 2 1204 351 0 0 0 chr9 81159852 81159891 -42916281 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1204 790 251 166 23 chr9 81159891 81159946 -42916226 - Lx2B LINE L1 -255 6745 6695 2 1204 1775 223 81 11 chr9 81159945 81160389 -42915783 - Lx6 LINE L1 -1383 6077 5603 2 1204 2165 143 59 5 chr9 81160389 81160762 -42915410 - RLTR25B LTR ERVK -481 547 155 2 1204 841 333 39 42 chr9 81160922 81161207 -42914965 + B4A SINE B4 9 292 0 2 1204 24 32 0 0 chr9 81163172 81163203 -42912969 + AT_rich Low_complexity Low_complexity 1 31 0 2 1204 2524 174 199 2 chr9 81163756 81164330 -42911842 - RMER6C LTR ERVK 0 690 4 2 1204 38 22 0 0 chr9 81164623 81164668 -42911504 + AT_rich Low_complexity Low_complexity 1 45 0 2 1204 1770 150 43 0 chr9 81164828 81165128 -42911044 - Lx2B LINE L1 -218 6782 6470 2 1204 303 28 0 0 chr9 81165131 81165167 -42911005 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 1204 3905 93 38 12 chr9 81165167 81165745 -42910427 - L1Md_F2 LINE L1 -19 6563 5971 2 1204 8112 62 4 1 chr9 81165745 81166920 -42909252 + L1Md_F2 LINE L1 4833 6013 -569 2 1204 1128 176 58 8 chr9 81166917 81166993 -42909179 - Lx2B LINE L1 -532 6468 6393 2 1204 497 58 14 0 chr9 81166993 81167062 -42909110 + (TTTA)n Simple_repeat Simple_repeat 4 73 0 2 1204 1056 171 59 8 chr9 81167062 81167221 -42908951 - Lx2B LINE L1 -608 6392 6221 2 1204 206 211 39 0 chr9 81167298 81167350 -42908822 + (CATTT)n Simple_repeat Simple_repeat 1 54 0 2 1204 5784 36 1 0 chr9 81167443 81168127 -42908045 - L1Md_T LINE L1 -3 6579 5895 2 1204 23 0 0 0 chr9 81168196 81168219 -42907953 + AT_rich Low_complexity Low_complexity 1 23 0 2 1204 581 304 43 5 chr9 81168264 81168472 -42907700 - B3 SINE B2 0 216 1 2 1204 991 171 137 0 chr9 81168498 81168703 -42907469 + ORR1B1 LTR MaLR 2 234 -160 2 1204 1041 8 0 0 chr9 81168703 81168821 -42907351 + (TTCCC)n Simple_repeat Simple_repeat 4 121 0 2 1204 673 154 102 6 chr9 81168828 81168985 -42907187 - Lx2 LINE L1 -6 6991 6820 2 1204 1144 118 6 0 chr9 81168985 81169154 -42907018 + ORR1B1 LTR MaLR 223 392 -2 2 1204 560 264 65 0 chr9 81169433 81169588 -42906584 - Lx6 LINE L1 -384 7076 6912 2 1204 449 309 43 6 chr9 81170099 81170339 -42905833 - L1M4 LINE L1 -558 5616 5371 2 1204 331 340 54 7 chr9 81170339 81170487 -42905685 - L1M4 LINE L1 -1781 4365 4211 2 1204 3788 197 58 45 chr9 81170523 81171499 -42904673 - Lx4B LINE L1 -12 7046 6058 2 1204 227 286 85 9 chr9 81171815 81171921 -42904251 - ORR1C2 LTR MaLR -4 380 267 2 1204 2979 130 0 2 chr9 81172151 81172599 -42903573 + Lx3A LINE L1 6521 6967 -14 2 1204 183 42 0 0 chr9 81172599 81172623 -42903549 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 1204 36522 46 1 13 chr9 81173349 81179531 -42896641 - L1Md_T LINE L1 -2 6580 474 2 1204 277 200 14 14 chr9 81179576 81179647 -42896525 + A-rich Low_complexity Low_complexity 1 71 0 2 1204 9265 83 25 25 chr9 81179707 81180365 -42895807 - Lx3_Mus LINE L1 -6 7003 6327 2 1204 3360 38 5 0 chr9 81180365 81180759 -42895413 - MTA_Mm LTR MaLR 0 396 1 2 1204 8398 63 6 13 chr9 81180759 81181864 -42894308 - MTA_Mm-int LTR MaLR 0 1098 1 2 1204 3325 33 5 18 chr9 81181864 81182265 -42893907 - MTA_Mm LTR MaLR 0 396 1 2 1204 9265 81 30 23 chr9 81182265 81183355 -42892817 - Lx3_Mus LINE L1 -683 6326 5270 2 1204 735 114 203 0 chr9 81183355 81183478 -42892694 - B1_Mus1 SINE Alu 0 148 1 2 1204 5416 80 33 21 chr9 81183478 81183700 -42892472 - Lx3_Mus LINE L1 -617 5269 5034 2 1204 1353 285 71 50 chr9 81183697 81184358 -42891814 - Lx7 LINE L1 -419 7277 6603 2 1204 270 0 0 0 chr9 81185723 81185753 -42890419 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1204 24 53 0 0 chr9 81185951 81185989 -42890183 + AT_rich Low_complexity Low_complexity 1 38 0 2 1204 491 304 35 48 chr9 81186076 81186221 -42889951 - RSINE1 SINE B4 -8 157 15 2 1204 37 52 0 0 chr9 81187131 81187189 -42888983 + AT_rich Low_complexity Low_complexity 1 58 0 2 1204 1200 316 14 28 chr9 81187218 81187642 -42888530 - Lx7 LINE L1 -853 6843 6426 2 1204 436 358 96 43 chr9 81188064 81188502 -42887670 + L2 LINE L2 2528 2988 -431 2 1204 387 297 99 26 chr9 81189757 81189839 -42886333 - RSINE1 SINE B4 0 165 83 2 1204 363 48 48 0 chr9 81189839 81189901 -42886271 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1204 387 297 99 26 chr9 81189901 81189970 -42886202 - RSINE1 SINE B4 -83 82 3 2 1204 1606 171 24 59 chr9 81190145 81190486 -42885686 - ORR1A4 LTR MaLR 0 329 1 2 1204 903 126 19 19 chr9 81190486 81190648 -42885524 - ORR1A4-int LTR MaLR 0 1963 1802 2 1204 5529 126 64 1 chr9 81190648 81191572 -42884600 - Lx2 LINE L1 -231 6766 5785 2 1204 759 157 94 31 chr9 81191570 81191761 -42884411 + Lx2 LINE L1 6789 6991 -6 2 1204 469 158 265 20 chr9 81191786 81191948 -42884224 - ORR1A4-int LTR MaLR -118 1391 1087 2 1204 28501 39 0 0 chr9 81191949 81195601 -42880571 + L1_Mm LINE L1 1927 5578 -305 2 1204 8342 40 0 0 chr9 81195609 81196605 -42879567 + L1Md_T LINE L1 5587 6582 0 2 1204 7563 192 34 87 chr9 81196605 81198475 -42877697 - ORR1A4-int LTR MaLR -192 1771 2 2 1204 1477 158 37 107 chr9 81198475 81198829 -42877343 - ORR1A4 LTR MaLR 0 329 1 2 1204 3532 75 6 2 chr9 81198903 81199372 -42876800 + L1_Mus3 LINE L1 6165 6635 -3 2 1204 628 267 7 14 chr9 81199961 81200109 -42876063 + B3 SINE B2 3 149 -67 2 1204 287 104 21 0 chr9 81200117 81200165 -42876007 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1204 566 320 17 17 chr9 81200663 81200834 -42875338 - MTD LTR MaLR -222 197 18 2 1204 29 47 0 0 chr9 81201057 81201100 -42875072 + AT_rich Low_complexity Low_complexity 1 43 0 2 1204 525 320 33 33 chr9 81203023 81203207 -42872965 + B3A SINE B2 13 196 -2 2 1204 380 287 123 7 chr9 81204948 81205098 -42871074 - MER67C LTR ERV1 -266 395 118 2 1204 563 290 51 39 chr9 81207038 81207293 -42868879 + Lx7 LINE L1 6925 7182 -514 2 1204 601 128 85 8 chr9 81207747 81207865 -42868307 - Lx2 LINE L1 -2 6995 6869 2 1204 1140 232 217 26 chr9 81208067 81208491 -42867681 + RLTR16 LTR ERVK 1 505 0 2 1204 1056 92 0 0 chr9 81209429 81209592 -42866580 + (CA)n Simple_repeat Simple_repeat 2 164 0 2 1204 216 0 0 0 chr9 81210089 81210113 -42866059 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1204 276 130 0 0 chr9 81211415 81211461 -42864711 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1204 377 123 15 0 chr9 81211460 81211525 -42864647 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1204 4531 80 16 142 chr9 81212535 81213394 -42862778 - RMER17A LTR ERVK 0 751 1 2 1204 358 333 90 61 chr9 81213425 81213735 -42862437 - Lx8 LINE L1 -223 7250 6932 2 1204 778 294 50 29 chr9 81214202 81214545 -42861627 - Lx8 LINE L1 -546 6927 6578 2 1204 606 302 31 35 chr9 81214722 81214976 -42861196 - Lx8 LINE L1 -993 6480 6228 2 1204 342 0 0 0 chr9 81215995 81216033 -42860139 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1204 267 31 0 0 chr9 81218376 81218408 -42857764 + (CAT)n Simple_repeat Simple_repeat 1 32 0 2 1204 26 93 0 0 chr9 81218701 81218776 -42857396 + AT_rich Low_complexity Low_complexity 1 75 0 2 1204 361 163 32 0 chr9 81219119 81219242 -42856930 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 2 1204 1792 82 0 8 chr9 81219337 81219583 -42856589 - L1_Mus1 LINE L1 0 6567 6324 2 1204 500 287 111 54 chr9 81220865 81221285 -42854887 + L1M5 LINE L1 4199 4645 -1498 2 1204 418 355 27 27 chr9 81221287 81221472 -42854700 + MTD LTR MaLR 1 185 -234 2 1204 838 312 142 49 chr9 81221382 81221813 -42854359 + MT2A LTR ERVL 63 533 0 2 1204 23 68 0 0 chr9 81221935 81221979 -42854193 + AT_rich Low_complexity Low_complexity 1 44 0 2 1204 187 103 25 25 chr9 81222189 81222229 -42853943 + CT-rich Low_complexity Low_complexity 2 41 0 2 1204 186 43 0 0 chr9 81222380 81222403 -42853769 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1204 1611 321 57 30 chr9 81223157 81223901 -42852271 + Lx9 LINE L1 6669 7432 -212 2 1204 270 116 0 0 chr9 81223917 81223960 -42852212 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1204 26 0 0 0 chr9 81224224 81224250 -42851922 + AT_rich Low_complexity Low_complexity 1 26 0 2 1204 6147 58 12 0 chr9 81224322 81225100 -42851072 + L1_Mus1 LINE L1 5781 6567 0 2 1204 33 80 0 0 chr9 81225204 81225279 -42850893 + AT_rich Low_complexity Low_complexity 1 75 0 2 1204 1831 203 17 12 chr9 81225897 81226241 -42849931 - ORR1B1 LTR MaLR -8 386 41 2 1204 1211 261 50 65 chr9 81226728 81226870 -42849302 + Lx6 LINE L1 7033 7167 -293 2 1204 3641 75 0 16 chr9 81226870 81227374 -42848798 - L1Md_F2 LINE L1 -2 6580 6085 2 1204 1211 261 50 65 chr9 81227374 81227649 -42848523 + Lx6 LINE L1 7168 7444 -16 2 1204 244 294 21 47 chr9 81227971 81228094 -42848078 + PB1D10 SINE Alu 17 141 -8 2 1204 220 135 0 88 chr9 81228282 81228339 -42847833 + T-rich Low_complexity Low_complexity 2 53 0 2 1204 568 224 281 9 chr9 81228339 81228567 -42847605 + MTD LTR MaLR 130 419 0 2 1204 2709 185 30 2 chr9 81229615 81230119 -42846053 - L1_Mur2 LINE L1 -60 5817 5300 2 1204 1175 199 93 10 chr9 81230118 81230428 -42845744 + Lx5 LINE L1 6084 6419 -631 2 1204 576 0 0 0 chr9 81230428 81230492 -42845680 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1204 510 246 56 128 chr9 81231137 81231197 -42844975 + B3A SINE B2 1 60 -138 2 1204 2301 176 167 39 chr9 81231197 81231808 -42844364 - RMER6C LTR ERVK 0 690 2 2 1204 510 246 56 128 chr9 81231808 81231943 -42844229 + B3A SINE B2 61 182 -16 2 1204 222 280 0 0 chr9 81231956 81232031 -42844141 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 2 1204 347 232 24 12 chr9 81232056 81232139 -42844033 + HAL1-3A_ME LINE L1 1976 2059 -799 3 1204 447 19 0 0 chr9 81232739 81232791 -42843381 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1204 1082 221 14 88 chr9 81233572 81233869 -42842303 + L1VL1 LINE L1 217 491 -5931 3 1204 991 103 117 28 chr9 81234235 81234414 -42841758 + B2_Mm2 SINE B2 1 195 0 3 1204 34238 70 6 5 chr9 81235044 81241032 -42835140 - L1Md_F2 LINE L1 -12 6570 575 3 1204 1529 133 41 30 chr9 81241032 81241327 -42834845 - Lx3B LINE L1 -665 6308 6011 3 1204 8566 134 16 3 chr9 81241328 81242805 -42833367 + Lx3B LINE L1 5479 6970 -3 3 1204 225 329 84 58 chr9 81242995 81243150 -42833022 - MIRb SINE MIR -96 172 14 3 1204 3741 173 36 10 chr9 81244565 81245264 -42830908 - Lx2B LINE L1 0 7000 6284 3 1204 4406 87 67 3 chr9 81245338 81245984 -42830188 + Lx3_Mus LINE L1 6319 7005 -4 3 1204 337 300 125 0 chr9 81246763 81246883 -42829289 - B1F SINE Alu -11 138 4 3 1204 255 290 39 24 chr9 81247034 81247161 -42829011 + MER2 DNA MER2_type 124 252 -93 3 1204 22 35 0 0 chr9 81247162 81247191 -42828981 + AT_rich Low_complexity Low_complexity 1 29 0 3 1204 32 75 0 0 chr9 81247498 81247565 -42828607 + AT_rich Low_complexity Low_complexity 1 67 0 3 1204 317 322 45 97 chr9 81247848 81248116 -42828056 + ORR1E LTR MaLR 101 354 -5 3 1204 475 16 0 0 chr9 81248375 81248436 -42827736 + RLTR10 LTR ERVK 1 61 -329 3 1204 819 51 0 0 chr9 81248436 81248534 -42827638 + RLTR10-int LTR ERVK 1887 1984 -3 3 1204 1732 33 0 0 chr9 81248536 81248750 -42827422 + RLTR10 LTR ERVK 1 214 -176 3 1204 222 208 0 0 chr9 81249096 81249149 -42827023 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1204 34 42 0 0 chr9 81251046 81251094 -42825078 + AT_rich Low_complexity Low_complexity 1 48 0 3 1204 214 383 143 5 chr9 81251109 81251332 -42824840 - L2 LINE L2 -557 2862 2609 3 1204 275 105 0 0 chr9 81251348 81251386 -42824786 + U2 snRNA snRNA 1 38 -150 3 1204 201 26 79 0 chr9 81251713 81251751 -42824421 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1204 495 48 0 0 chr9 81252411 81252473 -42823699 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1204 22 0 0 0 chr9 81254527 81254549 -42821623 + AT_rich Low_complexity Low_complexity 1 22 0 3 1204 3020 144 19 0 chr9 81254957 81255442 -42820730 + Lx3A LINE L1 6482 6975 -6 3 1204 21 0 0 0 chr9 81255587 81255608 -42820564 + AT_rich Low_complexity Low_complexity 1 21 0 3 1204 1336 211 108 10 chr9 81256731 81257028 -42819144 - Lx4B LINE L1 0 7058 6733 3 1204 17595 62 3 0 chr9 81257307 81260264 -42815908 - L1Md_F2 LINE L1 -4 6578 3613 3 1204 29 0 0 0 chr9 81260269 81260298 -42815874 + AT_rich Low_complexity Low_complexity 1 29 0 3 1204 1701 309 68 75 chr9 81260333 81260387 -42815785 - Lx8 LINE L1 0 7473 7419 3 1204 3507 23 0 0 chr9 81260387 81260783 -42815389 - MTA_Mm LTR MaLR 0 396 1 3 1204 1701 309 68 75 chr9 81260783 81261575 -42814597 - Lx8 LINE L1 -55 7418 6646 3 1204 1644 93 4 0 chr9 81261575 81261801 -42814371 + L1_Mus2 LINE L1 6340 6566 0 3 1204 1701 309 68 75 chr9 81261801 81262072 -42814100 - Lx8 LINE L1 -828 6645 6361 3 1204 776 224 41 97 chr9 81262072 81262413 -42813759 - RLTRETN_Mm LTR ERVK 0 322 1 3 1204 1701 309 68 75 chr9 81262413 81262448 -42813724 - Lx8 LINE L1 -1113 6360 6326 3 1204 31 68 0 0 chr9 81262912 81262971 -42813201 + AT_rich Low_complexity Low_complexity 1 59 0 3 1204 462 344 26 26 chr9 81263046 81263237 -42812935 + B3A SINE B2 1 191 -7 3 1204 984 266 16 8 chr9 81263589 81263839 -42812333 - Lx7 LINE L1 -602 7094 6843 3 1204 1860 217 21 70 chr9 81263861 81264386 -42811786 + RMER6C LTR ERVK 111 609 -81 3 1204 1475 190 100 15 chr9 81264540 81264569 -42811603 + Lx4B LINE L1 909 936 -6150 3 1204 234 81 0 0 chr9 81264569 81264606 -42811566 + (CAA)n Simple_repeat Simple_repeat 3 39 0 3 150 1475 191 96 12 chr9 81264606 81265109 -42811063 + Lx4B LINE L1 937 1478 -4399 3 1205 6711 176 49 76 chr9 81265102 81265423 -42810749 + Lx4B LINE L1 1785 2060 -3817 3 1205 465 19 0 0 chr9 81265423 81265477 -42810695 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1205 6711 176 49 76 chr9 81265477 81266898 -42809274 + Lx4B LINE L1 2061 3470 -2407 3 1205 189 0 0 0 chr9 81266898 81266919 -42809253 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 1205 6711 176 49 76 chr9 81266919 81266930 -42809242 + Lx4B LINE L1 3471 3491 -2386 3 1205 2624 188 24 4 chr9 81266930 81267389 -42808783 - RMER19B LTR ERVK 0 902 435 3 1205 459 164 41 0 chr9 81267389 81267462 -42808710 - MurERV4_19-int LTR ERVK -5704 76 1 3 1205 1525 130 4 0 chr9 81267462 81267687 -42808485 - MurERV4_19-int LTR ERVK -3333 2447 2222 3 1205 10030 170 42 10 chr9 81267687 81269353 -42806819 + Lx4B LINE L1 3484 5183 -694 3 1205 261 0 0 0 chr9 81269353 81269382 -42806790 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1205 10030 170 42 10 chr9 81269382 81269677 -42806495 + Lx4B LINE L1 5184 5508 -369 3 1205 960 256 65 122 chr9 81269703 81270152 -42806020 + RLTR23 LTR ERV1 8 430 0 3 1205 6029 181 21 18 chr9 81270152 81271171 -42805001 + Lx4B LINE L1 5506 6541 -517 3 1205 6307 59 15 0 chr9 81271171 81271967 -42804205 + RLTR13C2 LTR ERVK 1 808 0 3 1205 6029 179 22 19 chr9 81271967 81272177 -42803995 + Lx4B LINE L1 6542 6744 -314 3 1205 576 304 44 94 chr9 81272194 81272492 -42803680 - RLTR18B LTR ERVK -119 393 111 3 1205 546 252 102 8 chr9 81272515 81272643 -42803529 - RLTR18B LTR ERVK -367 145 6 3 1205 194 163 80 20 chr9 81273065 81273115 -42803057 - L3 LINE CR1 -2257 2232 2180 3 1205 21 0 0 0 chr9 81273920 81273941 -42802231 + AT_rich Low_complexity Low_complexity 1 21 0 3 1205 379 345 107 46 chr9 81273959 81274287 -42801885 - MLT1A LTR MaLR -26 348 1 3 1205 822 315 95 41 chr9 81274287 81274678 -42801494 - MLT1A-int LTR MaLR 0 1735 1324 3 1205 2073 150 92 13 chr9 81275024 81275416 -42800756 - Lx2B LINE L1 -8 6992 6570 3 1205 16010 52 4 1 chr9 81275414 81277477 -42798695 + L1_Mm LINE L1 2354 4422 -1461 3 1205 7869 13 0 0 chr9 81277478 81278352 -42797820 - MERVL-int LTR ERVL -2196 3289 2416 3 1205 3975 21 0 0 chr9 81278354 81278823 -42797349 - L1_Mm LINE L1 -3284 2599 2131 3 1205 3512 48 25 0 chr9 81278823 81279263 -42796909 + L1Md_F3 LINE L1 6133 6583 -1 3 1205 322 281 7 28 chr9 81279263 81279305 -42796867 - L1MCa LINE L1 -4172 2336 2295 3 1205 715 285 42 34 chr9 81279525 81279790 -42796382 - Lx9 LINE L1 -521 7123 6857 3 1205 2045 260 26 19 chr9 81279815 81280469 -42795703 - Lx9 LINE L1 -1677 5967 5273 3 1205 2875 183 24 7 chr9 81280484 81281029 -42795143 - Lx5 LINE L1 -8 7042 6489 3 1205 1025 175 125 0 chr9 81281074 81281274 -42794898 + URR1A DNA MER1_type 2 226 0 3 1205 551 304 30 151 chr9 81281387 81281610 -42794562 - MLT1A0 LTR MaLR -28 337 158 3 1205 556 327 55 0 chr9 81281610 81281812 -42794360 - B3 SINE B2 -3 213 1 3 1205 551 304 30 151 chr9 81281812 81281960 -42794212 - MLT1A0 LTR MaLR -208 157 11 3 1205 369 0 0 0 chr9 81282285 81282326 -42793846 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1205 457 297 0 78 chr9 81282746 81282874 -42793298 + B1_Mur1 SINE Alu 3 120 -29 3 1205 2219 230 113 113 chr9 81283013 81283925 -42792247 - RMER1B Other Other -3 1063 152 3 1205 261 0 0 0 chr9 81284137 81284166 -42792006 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1205 486 0 0 0 chr9 81284166 81284219 -42791953 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1205 538 193 17 0 chr9 81284452 81284571 -42791601 + L1Md_F3 LINE L1 450 570 -6157 3 1205 34025 58 2 1 chr9 81284570 81289384 -42786788 + L1Md_F3 LINE L1 674 5588 -298 3 1205 7908 38 14 5 chr9 81289385 81290362 -42785810 + L1Md_F3 LINE L1 5590 6575 -12 3 1205 1769 248 29 107 chr9 81290785 81291364 -42784808 - RMER15 LTR ERVL -20 555 22 3 1205 225 300 43 0 chr9 81291369 81291439 -42784733 - RMER15 LTR ERVL -502 73 1 3 1205 1002 326 23 20 chr9 81292349 81292395 -42783777 + Lx9 LINE L1 6301 6346 -1298 3 1205 282 56 0 0 chr9 81292395 81292431 -42783741 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1205 1002 326 23 20 chr9 81292431 81292782 -42783390 + Lx9 LINE L1 6347 6699 -945 3 1205 1341 287 55 65 chr9 81292876 81293459 -42782713 + Lx9 LINE L1 6907 7482 -162 3 1205 660 83 0 0 chr9 81293459 81293555 -42782617 + (CA)n Simple_repeat Simple_repeat 1 96 0 3 1205 1341 287 55 65 chr9 81293555 81293680 -42782492 + Lx9 LINE L1 7483 7608 -36 3 1205 52 17 0 0 chr9 81293681 81293740 -42782432 + AT_rich Low_complexity Low_complexity 1 59 0 3 1205 858 123 7 14 chr9 81293753 81293893 -42782279 + Lx2 LINE L1 5596 5734 -1266 3 1205 624 186 0 0 chr9 81293895 81294013 -42782159 - RLTR10 LTR ERVK -2 388 271 3 1205 23 78 0 0 chr9 81294025 81294076 -42782096 + AT_rich Low_complexity Low_complexity 1 51 0 3 1205 749 19 10 0 chr9 81294088 81294192 -42781980 - L1Md_T LINE L1 -1 6581 6477 3 1205 1448 29 0 0 chr9 81294192 81294362 -42781810 + L1Md_A LINE L1 5834 6003 -579 3 1205 1999 97 9 52 chr9 81294404 81294732 -42781440 - RLTR10 LTR ERVK -76 314 1 3 1205 3641 110 66 7 chr9 81294732 81295307 -42780865 + Lx2 LINE L1 5729 6337 -660 3 1205 1864 36 0 0 chr9 81295340 81295559 -42780613 - L1Md_F2 LINE L1 -350 6232 6014 3 1205 1821 74 3 85 chr9 81295559 81295854 -42780318 + L1Md_F2 LINE L1 6312 6582 0 3 1205 459 0 0 0 chr9 81295957 81296008 -42780164 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1205 191 103 0 25 chr9 81296239 81296279 -42779893 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1205 21 36 0 0 chr9 81297136 81297164 -42779008 + AT_rich Low_complexity Low_complexity 1 28 0 3 1205 270 282 122 5 chr9 81297206 81297402 -42778770 - MER33 DNA MER1_type -1 323 105 3 1205 208 93 22 44 chr9 81298028 81298073 -42778099 + A-rich Low_complexity Low_complexity 3 46 0 3 1205 436 324 62 14 chr9 81299007 81299151 -42777021 + RSINE1 SINE B4 2 152 -13 3 1205 192 97 0 0 chr9 81299159 81299190 -42776982 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1205 2951 266 66 60 chr9 81301134 81302039 -42774133 + RMER1C Other Other 430 1340 -2 3 1205 1217 302 57 121 chr9 81302244 81303075 -42773097 + Lx5 LINE L1 6223 7404 -56 3 1205 5987 38 3 0 chr9 81303102 81303819 -42772353 - L1Md_F3 LINE L1 -21 5862 5144 3 1205 5716 39 3 1 chr9 81303819 81304514 -42771658 + L1Md_F3 LINE L1 5886 6581 -3 3 1205 1251 246 14 7 chr9 81304518 81304797 -42771375 - Lx6 LINE L1 -406 7054 6774 3 1205 442 219 62 47 chr9 81304813 81304942 -42771230 - RMER1C Other Other -4 1338 1208 3 1205 4402 239 11 64 chr9 81304962 81305969 -42770203 + RMER1B Other Other 7 955 -111 3 1205 360 0 0 0 chr9 81305969 81306009 -42770163 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 1205 4402 239 11 64 chr9 81306009 81306108 -42770064 + RMER1B Other Other 956 1054 -12 3 1205 294 100 0 48 chr9 81306109 81306172 -42770000 + (GGAGAA)n Simple_repeat Simple_repeat 4 63 0 3 1205 319 273 0 0 chr9 81306178 81306266 -42769906 - RMER1C Other Other -117 1225 1138 3 1205 280 353 126 57 chr9 81306250 81306409 -42769763 + RMER1C Other Other 609 778 -564 3 1205 793 158 98 11 chr9 81307279 81307454 -42768718 + L1_Mus3 LINE L1 6440 6636 -2 3 1205 435 264 47 15 chr9 81307670 81307833 -42768339 + MTD LTR MaLR 207 419 0 3 1205 225 151 0 0 chr9 81308052 81308105 -42768067 + CT-rich Low_complexity Low_complexity 1 53 0 3 1205 468 234 0 0 chr9 81308104 81308332 -42767840 + (CA)n Simple_repeat Simple_repeat 1 228 0 3 1205 477 0 0 0 chr9 81308339 81308392 -42767780 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1205 1394 233 29 34 chr9 81309477 81309886 -42766286 - RCHARR1 DNA MER1_type -101 873 467 4 1205 372 383 80 38 chr9 81309901 81310164 -42766008 - B4A SINE B4 -9 283 10 4 1205 332 283 37 9 chr9 81310208 81310315 -42765857 + B3 SINE B2 9 118 -98 4 1205 275 282 0 13 chr9 81311463 81311542 -42764630 + GA-rich Low_complexity Low_complexity 3 80 0 4 1205 212 321 26 62 chr9 81311908 81312021 -42764151 - L2a LINE L2 -350 3076 2968 4 1205 450 0 0 0 chr9 81312764 81312814 -42763358 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1205 205 27 53 26 chr9 81313026 81313064 -42763108 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1205 903 18 0 0 chr9 81313064 81313175 -42762997 - B1_Mus1 SINE Alu -8 140 30 4 1205 185 108 27 0 chr9 81313514 81313551 -42762621 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 1205 9190 146 32 26 chr9 81313627 81315766 -42760406 - Lx2A1 LINE L1 -9 6999 4826 4 1205 2379 63 9 0 chr9 81315766 81316081 -42760091 + L1Md_F2 LINE L1 6264 6581 -1 4 1205 9190 166 8 38 chr9 81316081 81316808 -42759364 - Lx2A1 LINE L1 -1052 4825 4143 4 1205 4324 201 48 47 chr9 81316806 81317844 -42758328 + Lx2B LINE L1 5962 7000 0 4 1205 21 0 0 0 chr9 81317911 81317932 -42758240 + AT_rich Low_complexity Low_complexity 1 21 0 4 1205 225 0 0 0 chr9 81318127 81318152 -42758020 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1205 216 67 0 0 chr9 81318965 81318995 -42757177 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 1205 212 149 64 0 chr9 81319087 81319134 -42757038 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 4 1205 1451 201 98 9 chr9 81319172 81319508 -42756664 - ORR1D1 LTR MaLR -8 366 1 4 1205 2953 32 3 0 chr9 81319850 81320195 -42755977 + ORR1A1 LTR MaLR 1 346 0 4 1205 14090 48 12 1 chr9 81320195 81321968 -42754204 + ORR1A1-int LTR MaLR 1 1792 0 4 1205 2953 32 3 0 chr9 81321968 81322313 -42753859 + ORR1A1 LTR MaLR 1 346 0 4 1205 22 0 0 0 chr9 81322416 81322438 -42753734 + AT_rich Low_complexity Low_complexity 1 22 0 4 1205 193 197 30 0 chr9 81322438 81322504 -42753668 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1205 222 138 63 31 chr9 81322567 81322694 -42753478 + (TA)n Simple_repeat Simple_repeat 2 132 0 4 1205 381 330 57 57 chr9 81322857 81323066 -42753106 + MLT1A0 LTR MaLR 38 246 -119 4 1205 879 237 74 21 chr9 81323882 81324166 -42752006 + L1VL1 LINE L1 1 299 -6123 4 1205 391 266 0 0 chr9 81324157 81324251 -42751921 + L1Md_F2 LINE L1 332 425 -6191 4 1205 29607 61 73 8 chr9 81324249 81328630 -42747542 + L1Md_F2 LINE L1 928 5584 -299 4 1205 7540 70 7 1 chr9 81328632 81329610 -42746562 + L1Md_F2 LINE L1 5587 6570 -12 4 1205 196 333 0 54 chr9 81329845 81329937 -42746235 + L2a LINE L2 3332 3418 -8 4 1205 264 275 87 7 chr9 81330389 81330539 -42745633 - Lx7 LINE L1 -15 7681 7520 4 1205 312 27 0 0 chr9 81330543 81330580 -42745592 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 4 1205 221 314 19 28 chr9 81330791 81330899 -42745273 - L2a LINE L2 0 3426 3320 4 1205 356 302 36 36 chr9 81332822 81332932 -42743240 - B1F SINE Alu 0 149 40 4 1205 444 261 44 7 chr9 81334006 81334141 -42742031 + Lx6 LINE L1 7253 7392 -68 4 1205 1663 185 130 31 chr9 81334147 81334532 -42741640 + RLTR23 LTR ERV1 8 430 0 4 1205 200 267 119 37 chr9 81336565 81336674 -42739498 - L2a LINE L2 0 3426 3309 4 1205 1721 218 33 45 chr9 81336741 81336817 -42739355 - ORR1B1 LTR MaLR 0 394 333 4 1205 5897 123 25 17 chr9 81336817 81337777 -42738395 - Lx3A LINE L1 -6 6975 6008 4 1205 1721 218 33 45 chr9 81337777 81338099 -42738073 - ORR1B1 LTR MaLR -62 332 1 4 1205 3726 210 79 37 chr9 81339939 81340858 -42735314 - RMER17B LTR ERVK 0 958 1 4 1205 205 86 0 28 chr9 81340912 81340948 -42735224 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1205 880 119 0 0 chr9 81341289 81341432 -42734740 + Lx LINE L1 6504 6646 -8 4 1205 237 254 0 0 chr9 81341435 81341494 -42734678 + A-rich Low_complexity Low_complexity 1 59 0 4 1205 21 0 0 0 chr9 81341599 81341620 -42734552 + AT_rich Low_complexity Low_complexity 1 21 0 4 1205 1809 188 37 16 chr9 81342292 81342670 -42733502 - ORR1B1 LTR MaLR -8 386 1 4 1205 543 355 64 42 chr9 81343739 81344116 -42732056 - MLT1B LTR MaLR 0 390 6 4 1205 958 297 135 15 chr9 81344135 81344528 -42731644 - MLT1B-int LTR MaLR -14 1721 1282 4 1205 1296 335 30 38 chr9 81345078 81345713 -42730459 - Lx8 LINE L1 -356 7117 6488 4 1205 951 296 124 50 chr9 81346028 81346351 -42729821 - ORR1E LTR MaLR -7 352 6 4 1205 249 368 66 7 chr9 81346415 81346552 -42729620 - MLT1A-int LTR MaLR -484 1005 861 4 1205 598 268 231 39 chr9 81346554 81347122 -42729050 - MLT1A-int LTR MaLR -645 726 15 4 1205 249 329 82 27 chr9 81347146 81347293 -42728879 - MLT1A LTR MaLR -10 380 226 4 1205 1877 214 26 111 chr9 81347314 81347844 -42728328 - RLTR11A2 LTR ERVK -42 485 1 4 1205 283 277 115 43 chr9 81347845 81348063 -42728109 - MLT1A LTR MaLR -159 231 3 4 1205 633 27 0 0 chr9 81348330 81348405 -42727767 + (GAGAA)n Simple_repeat Simple_repeat 4 78 0 4 1205 1154 80 0 6 chr9 81348405 81348568 -42727604 + (GGGGA)n Simple_repeat Simple_repeat 2 164 0 4 1205 184 250 80 91 chr9 81349019 81349107 -42727065 + MIRm SINE MIR 64 150 -126 4 1205 1050 197 59 0 chr9 81351339 81351578 -42724594 - Lx7 LINE L1 -1674 6022 5770 4 1205 935 278 46 0 chr9 81351603 81351844 -42724328 + Lx7 LINE L1 6291 6542 -1154 4 1205 883 225 65 5 chr9 81351840 81352041 -42724131 + Lx7 LINE L1 6878 7090 -606 4 1205 1939 70 0 15 chr9 81352045 81352305 -42723867 - L1Md_F2 LINE L1 -96 6486 6231 4 1205 3354 134 65 67 chr9 81353457 81354209 -42721963 - RMER17A LTR ERVK 0 751 1 4 1205 302 315 47 14 chr9 81354214 81354362 -42721810 - MLT1A0 LTR MaLR -31 334 182 4 1205 261 359 13 65 chr9 81354379 81354534 -42721638 - MLT1A0 LTR MaLR -245 163 17 4 1205 2911 178 25 7 chr9 81355848 81356500 -42719672 + Lx2B LINE L1 5288 5967 -1033 4 1205 606 63 0 0 chr9 81356613 81356692 -42719480 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 4 1205 219 360 0 39 chr9 81356709 81356787 -42719385 + ID4_ SINE ID 7 81 -2 4 1205 8905 78 0 1 chr9 81356991 81358195 -42717977 - L1_Mm LINE L1 -1659 4224 3022 4 1205 2479 52 0 0 chr9 81358189 81358494 -42717678 + L1Md_F2 LINE L1 5283 5587 -296 4 1205 8219 35 4 4 chr9 81358495 81359481 -42716691 + L1Md_F2 LINE L1 5589 6574 -8 4 1205 629 341 84 87 chr9 81359481 81359966 -42716206 + MLT2B3 LTR ERVL 69 552 -2 4 1205 765 61 0 0 chr9 81362276 81362375 -42713797 + (TA)n Simple_repeat Simple_repeat 2 100 0 4 1205 320 315 103 81 chr9 81362846 81364017 -42712155 + L1MEf LINE L1 501 1697 -4503 4 1205 701 310 46 22 chr9 81364342 81364711 -42711461 - L1MC4 LINE L1 -450 7592 7215 4 1205 469 182 0 0 chr9 81364886 81364985 -42711187 - Lx2 LINE L1 0 6997 6899 4 1205 238 257 106 42 chr9 81365307 81365449 -42710723 - L1M4 LINE L1 -800 5340 5190 4 1205 27 103 0 0 chr9 81365472 81365569 -42710603 + AT_rich Low_complexity Low_complexity 1 97 0 4 1205 302 314 81 45 chr9 81365569 81365816 -42710356 - L1M4 LINE L1 -989 5157 4902 4 1205 637 312 114 65 chr9 81366048 81366133 -42710039 + ORR1E LTR MaLR 11 99 -260 4 1205 1060 104 0 41 chr9 81366133 81366303 -42709869 + L1_Mus2 LINE L1 6404 6566 0 4 1205 637 312 114 65 chr9 81366303 81366542 -42709630 + ORR1E LTR MaLR 100 351 -8 4 1205 412 219 74 8 chr9 81366655 81366802 -42709370 - L1MA9 LINE L1 -166 6146 5989 4 1205 186 118 19 56 chr9 81366941 81366995 -42709177 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 4 1205 308 282 112 52 chr9 81367107 81367223 -42708949 + L1M3 LINE L1 2893 3006 -3134 4 1205 433 231 0 96 chr9 81367223 81367338 -42708834 + PB1D10 SINE Alu 5 108 -9 4 1205 308 282 112 52 chr9 81367338 81367703 -42708469 + L1M3 LINE L1 3007 3403 -2737 4 1205 304 261 161 0 chr9 81367983 81368113 -42708059 - L1MC4 LINE L1 -826 7056 6906 4 1205 3855 96 6 0 chr9 81368165 81368687 -42707485 + L1_Mus1 LINE L1 6043 6567 0 4 1205 213 39 0 0 chr9 81368726 81368752 -42707420 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1205 4552 47 2 0 chr9 81369450 81370004 -42706168 + L1Md_F2 LINE L1 6026 6580 -2 4 1205 268 143 0 28 chr9 81370185 81370257 -42705915 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 4 1205 279 0 0 0 chr9 81370774 81370805 -42705367 + (CAAT)n Simple_repeat Simple_repeat 3 33 0 4 1205 351 0 0 0 chr9 81371082 81371121 -42705051 + (ATG)n Simple_repeat Simple_repeat 1 39 0 4 1205 449 62 0 24 chr9 81371121 81371204 -42704968 - L1Md_F3 LINE L1 -28 6556 6476 4 1205 732 149 0 124 chr9 81371706 81371867 -42704305 + ORR1C1 LTR MaLR 2 142 -236 4 1205 1141 235 97 17 chr9 81371874 81372164 -42704008 - ORR1D1 LTR MaLR -60 314 2 4 1205 1056 225 29 12 chr9 81372255 81372498 -42703674 + ORR1C1 LTR MaLR 127 373 -5 4 1205 222 128 0 0 chr9 81372558 81372597 -42703575 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 1205 478 265 72 6 chr9 81373533 81373700 -42702472 + Charlie10 DNA MER1_type 2642 2819 -3 4 1205 388 62 46 0 chr9 81373735 81373800 -42702372 - L1Md_F2 LINE L1 -1 6581 6514 4 1205 445 329 24 18 chr9 81374516 81374683 -42701489 + B4 SINE B4 123 290 -2 4 1205 342 45 0 0 chr9 81374697 81374741 -42701431 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1205 1694 83 0 0 chr9 81374796 81375026 -42701146 - L1_Mm LINE L1 -695 5188 4959 4 1205 747 53 35 0 chr9 81375026 81375140 -42701032 + L1Md_F2 LINE L1 6451 6568 -14 4 1205 528 45 0 0 chr9 81375143 81375210 -42700962 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 4 1205 205 207 85 17 chr9 81376399 81376458 -42699714 - MER5A DNA MER1_type -121 68 6 4 1205 2021 65 0 61 chr9 81376775 81377072 -42699100 + L1Md_A LINE L1 6304 6582 0 4 1205 23 54 0 0 chr9 81377242 81377279 -42698893 + AT_rich Low_complexity Low_complexity 1 37 0 4 1205 229 329 23 12 chr9 81377360 81377446 -42698726 + PB1D10 SINE Alu 21 107 -10 4 1205 382 254 26 26 chr9 81377589 81377702 -42698470 + Lx7 LINE L1 7584 7696 0 4 1205 398 329 56 71 chr9 81377965 81378305 -42697867 + L1MC5 LINE L1 6761 7095 -866 4 1205 35335 53 1 16 chr9 81378440 81383630 -42692542 + L1Md_T LINE L1 476 5586 -297 4 1205 8226 38 2 1 chr9 81383631 81384624 -42691548 + L1Md_T LINE L1 5588 6581 -1 4 1205 4719 48 2 0 chr9 81384623 81385200 -42690972 + L1Md_T LINE L1 6004 6581 -1 4 1205 181 233 37 99 chr9 81385455 81385536 -42690636 + L3 LINE CR1 853 928 -3561 4 1205 1737 107 85 23 chr9 81385774 81386080 -42690092 + Lx LINE L1 6328 6652 -2 4 1205 715 145 58 13 chr9 81386088 81386242 -42689930 + L1_Mus3 LINE L1 6478 6638 0 4 1205 342 291 53 39 chr9 81386260 81386467 -42689705 + RLTR15 LTR ERVK 106 315 -44 4 1205 21 36 0 0 chr9 81387242 81387270 -42688902 + AT_rich Low_complexity Low_complexity 1 28 0 5 1205 2156 78 7 0 chr9 81388014 81388307 -42687865 - ORR1A0 LTR MaLR -51 295 1 5 1205 6756 67 8 12 chr9 81388307 81389245 -42686927 - ORR1A0-int LTR MaLR 0 1792 859 5 1205 205 182 0 0 chr9 81389245 81389289 -42686883 + T-rich Low_complexity Low_complexity 2 45 0 5 1205 2621 60 0 0 chr9 81389305 81389640 -42686532 - L1Md_F2 LINE L1 -12 6570 6236 5 1205 190 381 12 23 chr9 81389886 81389972 -42686200 + L2b LINE L2 3281 3365 -10 5 1205 21 0 0 0 chr9 81390340 81390361 -42685811 + AT_rich Low_complexity Low_complexity 1 21 0 5 1205 485 271 90 36 chr9 81390904 81391126 -42685046 - L1MA6 LINE L1 -2 6298 6065 5 1205 267 300 12 36 chr9 81391487 81391570 -42684602 + B4A SINE B4 2 82 -210 5 1205 23 33 0 0 chr9 81392197 81392227 -42683945 + AT_rich Low_complexity Low_complexity 1 30 0 5 1205 345 24 0 0 chr9 81392232 81392274 -42683898 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1205 344 298 24 83 chr9 81392756 81392961 -42683211 + B3A SINE B2 3 195 -3 5 1205 1157 62 0 0 chr9 81393350 81393494 -42682678 + B1_Mus2 SINE Alu 1 144 -3 5 1205 202 87 43 0 chr9 81393497 81393543 -42682629 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 1205 210 272 17 26 chr9 81393933 81394050 -42682122 + T-rich Low_complexity Low_complexity 2 117 0 5 1205 2796 149 52 4 chr9 81394116 81394613 -42681559 + RLTR28 LTR ERVL 1 521 -3 5 1205 555 186 0 0 chr9 81394628 81394789 -42681383 + GA-rich Low_complexity Low_complexity 2 162 0 5 1205 1134 75 0 26 chr9 81395556 81395707 -42680465 + B1_Mus1 SINE Alu 2 148 0 5 150 279 53 17 50 chr9 81395708 81395768 -42680404 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 5 1206 449 298 147 28 chr9 81395780 81396032 -42680140 + B4A SINE B4 3 284 -8 5 1206 200 207 34 17 chr9 81396047 81396106 -42680066 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 5 1206 313 350 45 23 chr9 81396204 81396353 -42679819 - MIRb SINE MIR -94 168 18 5 1206 1215 259 67 51 chr9 81397213 81397548 -42678624 + L1_Rod LINE L1 931 1271 -6337 5 1206 1968 152 11 39 chr9 81397548 81397910 -42678262 + Lx LINE L1 6299 6650 -4 5 1206 1215 246 135 38 chr9 81397910 81398500 -42677672 + L1_Rod LINE L1 1272 1927 -3920 5 1206 693 24 0 0 chr9 81398544 81398627 -42677545 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1206 279 283 17 0 chr9 81399895 81399955 -42676217 + ID4_ SINE ID 1 61 -22 5 1206 28 71 0 0 chr9 81400231 81400287 -42675885 + AT_rich Low_complexity Low_complexity 1 56 0 5 1206 476 299 54 45 chr9 81400523 81400765 -42675407 + RMER5 LTR ERV1 275 518 -16 5 1206 469 331 76 52 chr9 81400775 81401065 -42675107 - ORR1E LTR MaLR -52 307 11 5 1206 225 0 0 0 chr9 81401264 81401289 -42674883 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1206 464 257 126 32 chr9 81401764 81402049 -42674123 - L1MC2 LINE L1 -361 5983 5672 5 1206 1922 300 84 32 chr9 81402234 81403289 -42672883 - Lx8 LINE L1 -834 6639 5531 5 1206 228 242 54 39 chr9 81403398 81403527 -42672645 - L1MD LINE L1 -1214 4932 4802 5 1206 6276 133 21 21 chr9 81403697 81404782 -42671390 - Lx2A1 LINE L1 -11 6997 5913 5 1206 2356 53 3 0 chr9 81404782 81405083 -42671089 + Lx2A1 LINE L1 5615 5916 -1092 5 1206 24 53 0 0 chr9 81405561 81405599 -42670573 + AT_rich Low_complexity Low_complexity 1 38 0 5 1206 22 0 0 0 chr9 81406772 81406794 -42669378 + AT_rich Low_complexity Low_complexity 1 22 0 5 1206 4944 76 0 2 chr9 81407251 81407896 -42668276 - L1_Mus1 LINE L1 -2 6565 5922 5 1206 25 31 0 0 chr9 81409039 81409071 -42667101 + AT_rich Low_complexity Low_complexity 1 32 0 5 1206 2506 146 11 9 chr9 81410034 81410483 -42665689 - RLTR11B LTR ERVK -3 450 1 5 1206 332 43 22 0 chr9 81411236 81411282 -42664890 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 5 1206 207 0 0 0 chr9 81411292 81411315 -42664857 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1206 273 309 36 24 chr9 81411320 81411403 -42664769 + ERVL-B4-int LTR ERVL 3249 3332 -2382 5 1206 258 354 101 72 chr9 81413524 81413831 -42662341 + MLT1N2 LTR MaLR 39 354 -208 5 1206 8184 44 1 4 chr9 81414199 81415402 -42660770 - L1Md_F3 LINE L1 0 6584 5386 5 1206 1031 78 0 0 chr9 81415392 81415534 -42660638 + L1Md_F2 LINE L1 4557 4698 -1185 5 1206 2493 37 3 0 chr9 81416231 81416529 -42659643 + L1Md_F2 LINE L1 5287 5585 -298 5 1206 7623 64 9 2 chr9 81416530 81417516 -42658656 + L1Md_F2 LINE L1 5587 6579 -3 5 1206 480 152 0 0 chr9 81417553 81417652 -42658520 + (TAG)n Simple_repeat Simple_repeat 2 100 0 5 1206 192 40 0 0 chr9 81417743 81417768 -42658404 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 5 1206 796 75 0 0 chr9 81417768 81417875 -42658297 - B1_Mm SINE Alu 0 147 41 5 1206 858 221 43 29 chr9 81418210 81418420 -42657752 - B3 SINE B2 -2 214 2 5 1206 240 252 147 18 chr9 81418752 81418861 -42657311 - L1MA4 LINE L1 -353 5947 5825 5 1206 760 253 70 46 chr9 81418898 81419455 -42656717 - L1MA4 LINE L1 -830 5470 4898 5 1206 3172 47 5 2 chr9 81419874 81420277 -42655895 + L1Md_F2 LINE L1 6178 6581 -1 5 1206 852 63 0 0 chr9 81420810 81420921 -42655251 + (GAA)n Simple_repeat Simple_repeat 2 112 0 5 1206 4176 162 49 10 chr9 81421156 81421931 -42654241 - Lx4B LINE L1 0 7058 6254 5 1206 632 261 20 20 chr9 81423091 81423294 -42652878 - L1_Mur3 LINE L1 -813 5067 4865 5 1206 230 278 29 67 chr9 81423320 81423424 -42652748 - L1_Mur3 LINE L1 -1097 4783 4684 5 1206 1273 269 45 19 chr9 81423416 81424091 -42652081 + Lx7 LINE L1 5464 6157 -1539 5 1206 444 37 0 0 chr9 81424098 81424152 -42652020 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1206 996 191 76 5 chr9 81424472 81424683 -42651489 - URR1A DNA MER1_type 0 226 1 5 1206 398 321 7 79 chr9 81425628 81425780 -42650392 + B4A SINE B4 129 269 -23 5 1206 375 23 0 0 chr9 81425805 81425849 -42650323 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1206 710 212 9 22 chr9 81425957 81426188 -42649984 - Lx9 LINE L1 -1 7643 7416 5 1206 6241 61 1 5 chr9 81426209 81427004 -42649168 - L1Md_F2 LINE L1 -13 6569 5778 5 1206 1017 263 55 74 chr9 81427004 81427407 -42648765 - Lx9 LINE L1 -215 7429 7035 5 1206 439 95 27 0 chr9 81427800 81427874 -42648298 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 1206 703 254 0 29 chr9 81428058 81428196 -42647976 + B1_Mur1 SINE Alu 15 148 -1 5 1206 6299 41 1 0 chr9 81428227 81429037 -42647135 - L1Md_F3 LINE L1 -240 6342 5532 5 1206 1722 48 0 26 chr9 81429037 81429270 -42646902 + L1Md_F3 LINE L1 6344 6570 -14 5 1206 697 313 85 47 chr9 81429768 81430217 -42645955 + ERVL-E-int LTR ERVL 2272 2737 -2930 5 1206 277 322 92 8 chr9 81430294 81430413 -42645759 - LTR16E2 LTR ERVL -1 567 439 5 1206 797 203 54 11 chr9 81431001 81431185 -42644987 - URR1A DNA MER1_type -28 198 7 5 1206 4914 72 1 3 chr9 81431332 81431982 -42644190 + L1Md_T LINE L1 5933 6581 -1 5 1206 465 373 42 6 chr9 81432762 81433075 -42643097 + ERVL-E-int LTR ERVL 3867 4190 -1524 5 1206 1392 251 83 48 chr9 81433833 81434206 -42641966 - MTD LTR MaLR -16 403 18 5 1206 324 0 0 0 chr9 81434207 81434243 -42641929 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5 1206 606 159 0 0 chr9 81434367 81434474 -42641698 + CT-rich Low_complexity Low_complexity 2 108 0 5 1206 222 43 85 0 chr9 81434609 81434656 -42641516 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1206 965 82 123 0 chr9 81434667 81434813 -42641359 - B2_Mm2 SINE B2 -26 169 6 5 1206 198 47 93 0 chr9 81434848 81434891 -42641281 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1206 955 238 148 16 chr9 81436768 81437139 -42639033 - Lx9 LINE L1 -2 7642 7223 5 1206 5271 45 2 0 chr9 81437254 81437893 -42638279 - L1Md_T LINE L1 0 6582 5943 5 1206 2398 21 1 2 chr9 81437893 81438202 -42637970 + L1Md_T LINE L1 5647 5953 -629 5 1206 24 67 0 0 chr9 81438218 81438263 -42637909 + AT_rich Low_complexity Low_complexity 1 45 0 5 1206 2188 124 73 24 chr9 81438263 81438644 -42637528 - Lx3A LINE L1 -10 6971 6572 5 1206 6555 109 10 16 chr9 81438644 81439728 -42636444 + Lx3A LINE L1 5528 6595 -386 5 1206 425 339 44 31 chr9 81440523 81440607 -42635565 + MER74A LTR ERVL 179 266 -292 5 1206 1575 161 40 69 chr9 81440607 81441027 -42635145 + RMER17C LTR ERVK 3 410 0 5 1206 425 339 44 31 chr9 81441027 81441170 -42635002 + MER74A LTR ERVL 267 409 -149 5 1206 224 188 42 0 chr9 81441606 81441654 -42634518 + GA-rich Low_complexity Low_complexity 2 51 0 5 1206 460 319 36 36 chr9 81441771 81441882 -42634290 + MER95 LTR ERV 6 117 -314 5 1206 2176 67 17 10 chr9 81441882 81442182 -42633990 - L1Md_F2 LINE L1 -12 6570 6269 5 1206 460 319 36 36 chr9 81442182 81442294 -42633878 + MER95 LTR ERV 118 229 -202 5 1206 284 330 11 0 chr9 81442331 81442419 -42633753 + MER95 LTR ERV 242 330 -101 5 1206 221 140 0 23 chr9 81442476 81442520 -42633652 + GA-rich Low_complexity Low_complexity 4 46 0 5 1206 1053 150 0 0 chr9 81442520 81442700 -42633472 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1206 183 196 64 21 chr9 81442959 81443006 -42633166 - MIR SINE MIR -12 250 202 5 1206 1786 270 221 24 chr9 81443046 81443302 -42632870 + RMER1A Other Other 130 385 -645 5 1206 246 32 0 0 chr9 81443302 81443333 -42632839 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1206 1975 182 153 15 chr9 81443333 81443824 -42632348 + RMER1B Other Other 386 1061 -5 5 1206 531 31 0 0 chr9 81444381 81444446 -42631726 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1206 4189 105 18 5 chr9 81445313 81445936 -42630236 + L1_Mus4 LINE L1 6000 6630 -6 5 1206 1485 199 132 0 chr9 81446895 81447212 -42628960 + ORR1B2 LTR MaLR 1 359 -8 5 1206 215 146 0 18 chr9 81447651 81447707 -42628465 + T-rich Low_complexity Low_complexity 3 57 0 5 1206 428 0 19 0 chr9 81448726 81448778 -42627394 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 5 1206 271 283 25 164 chr9 81448957 81449232 -42626940 + L1M4 LINE L1 5357 5593 -581 5 1206 474 316 37 16 chr9 81450131 81450321 -42625851 + Charlie1b DNA MER1_type 58 251 -272 5 1206 191 167 0 0 chr9 81450939 81450975 -42625197 + MIRc SINE MIR 201 236 -32 5 1206 426 140 71 61 chr9 81451055 81451075 -42625097 - MTD LTR MaLR -10 409 395 5 1206 558 63 0 0 chr9 81451075 81451154 -42625018 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 1206 426 220 175 41 chr9 81451154 81451317 -42624855 - MTD LTR MaLR -25 394 171 5 1206 243 0 0 0 chr9 81452123 81452150 -42624022 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 1206 610 89 10 10 chr9 81452989 81453006 -42623166 + (GGGA)n Simple_repeat Simple_repeat 4 20 0 5 1206 1062 144 0 0 chr9 81453006 81453186 -42622986 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1206 610 89 10 10 chr9 81453186 81453270 -42622902 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 6 1206 606 314 112 13 chr9 81453458 81453771 -42622401 + MER82 DNA MER2_type 6 349 -304 6 1206 8330 134 35 11 chr9 81453989 81456234 -42619938 - Lx3C LINE L1 -7 6969 4663 6 1206 2123 243 24 6 chr9 81456232 81456725 -42619447 + Lx6 LINE L1 6368 6869 -591 6 1206 697 198 27 5 chr9 81456736 81456946 -42619226 + RMER6D LTR ERVK 559 700 -20 6 1206 1197 259 14 14 chr9 81456965 81457243 -42618929 + Lx6 LINE L1 7178 7455 -5 6 1206 37 39 0 0 chr9 81457537 81457588 -42618584 + AT_rich Low_complexity Low_complexity 1 51 0 6 1206 425 252 7 14 chr9 81459073 81459214 -42616958 + Lx9 LINE L1 956 1095 -6513 6 1206 4356 157 1 4 chr9 81459213 81459962 -42616210 - L1_Mm LINE L1 -443 5440 4694 6 1206 1868 118 47 26 chr9 81459970 81460310 -42615862 + Lx LINE L1 6308 6654 0 6 1206 303 140 0 0 chr9 81460320 81460370 -42615802 + (A)n Simple_repeat Simple_repeat 1 50 0 6 1206 1607 225 55 62 chr9 81460414 81461085 -42615087 + Lx9 LINE L1 1174 1842 -4005 6 1206 552 295 96 20 chr9 81461074 81461375 -42614797 + Lx9 LINE L1 4604 4927 -920 6 1206 2178 173 14 28 chr9 81461354 81461789 -42614383 + Lx2 LINE L1 4699 5127 -756 6 1206 6512 142 29 65 chr9 81461772 81461868 -42614304 + Lx2 LINE L1 5810 5904 -1093 6 1206 1326 78 0 0 chr9 81461868 81462048 -42614124 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1206 6512 142 29 65 chr9 81462048 81463150 -42613022 + Lx2 LINE L1 5905 6964 -33 6 1206 4249 50 0 4 chr9 81463150 81463675 -42612497 + L1Md_F2 LINE L1 6046 6568 -14 6 1206 6512 142 29 65 chr9 81463675 81463696 -42612476 + Lx2 LINE L1 6965 6985 -12 6 1206 1430 161 21 39 chr9 81463807 81464091 -42612081 + RLTR46 LTR ERVK 42 320 0 6 1206 1585 266 122 39 chr9 81464119 81465145 -42611027 + Lx9 LINE L1 5045 6172 -1301 6 1206 1058 302 46 23 chr9 81465145 81465538 -42610634 + Lx9 LINE L1 6399 6800 -844 6 1206 789 40 0 0 chr9 81465538 81465639 -42610533 + (TC)n Simple_repeat Simple_repeat 2 102 0 6 1206 1291 81 0 6 chr9 81465640 81465814 -42610358 - B2_Mm2 SINE B2 -22 173 1 6 1206 1567 299 83 28 chr9 81465814 81466419 -42609753 + Lx9 LINE L1 6790 7427 -217 6 1206 748 266 93 5 chr9 81468853 81469046 -42607126 + B3 SINE B2 2 211 -5 6 1206 379 282 35 65 chr9 81469444 81469645 -42606527 - L1M4 LINE L1 -2689 3955 3761 6 1206 536 121 11 0 chr9 81469698 81469789 -42606383 + (TC)n Simple_repeat Simple_repeat 2 93 0 6 1206 863 133 29 0 chr9 81469782 81469955 -42606217 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 6 1206 229 223 189 28 chr9 81470248 81470354 -42605818 - L1M4 LINE L1 -5777 765 643 6 1206 22 0 0 0 chr9 81470470 81470492 -42605680 + AT_rich Low_complexity Low_complexity 1 22 0 6 1206 252 0 0 0 chr9 81470610 81470638 -42605534 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1206 1459 48 32 0 chr9 81470865 81471052 -42605120 - B2_Mm1t SINE B2 0 193 1 6 1206 574 349 36 47 chr9 81471990 81472264 -42603908 - B4 SINE B4 -18 274 4 6 1206 2758 178 67 4 chr9 81472346 81472899 -42603273 - L1Md_A LINE L1 -5730 994 407 6 1206 306 319 53 0 chr9 81473433 81473527 -42602645 + B3 SINE B2 101 199 -17 6 1206 2060 218 45 51 chr9 81473575 81474179 -42601993 + Lx7 LINE L1 7095 7694 -2 6 1206 23 33 0 0 chr9 81474526 81474556 -42601616 + AT_rich Low_complexity Low_complexity 1 30 0 6 1206 25 83 0 0 chr9 81475090 81475150 -42601022 + AT_rich Low_complexity Low_complexity 1 60 0 6 1206 2285 75 119 11 chr9 81475382 81475734 -42600438 + RLTR10 LTR ERVK 1 390 0 6 1206 24 53 0 0 chr9 81476059 81476097 -42600075 + AT_rich Low_complexity Low_complexity 1 38 0 6 1206 320 211 14 14 chr9 81476752 81476824 -42599348 - MER57-int LTR ERV1 -302 7235 7164 6 1206 4184 110 6 12 chr9 81476824 81477462 -42598710 + L1_Mus3 LINE L1 5998 6631 -7 6 1206 1343 140 8 59 chr9 81478133 81478289 -42597883 + URR1B DNA MER1_type 2 153 -72 6 1206 1135 50 0 0 chr9 81478289 81478428 -42597744 + B1_Mm SINE Alu 3 141 -6 6 1206 495 0 0 0 chr9 81478430 81478485 -42597687 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 6 1206 1343 140 8 59 chr9 81478485 81478561 -42597611 + URR1B DNA MER1_type 154 225 0 6 1206 5675 181 88 5 chr9 81478691 81480135 -42596037 + Lx2B LINE L1 5400 7000 0 6 1206 22 35 0 0 chr9 81480606 81480635 -42595537 + AT_rich Low_complexity Low_complexity 1 29 0 6 1206 379 341 59 0 chr9 81482930 81483100 -42593072 + L1MDa LINE L1 50 229 -6404 6 1206 311 303 79 7 chr9 81483157 81483308 -42592864 + MLT-int LTR MaLR 1444 1720 -15 6 1206 492 18 0 0 chr9 81483449 81483506 -42592666 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1206 599 291 155 67 chr9 81483513 81483603 -42592569 - MTD LTR MaLR -136 260 144 6 1206 1920 220 104 139 chr9 81483603 81484236 -42591936 + RMER19C LTR ERVK 1 611 0 6 1206 599 318 21 43 chr9 81484236 81484384 -42591788 - MTD LTR MaLR -268 151 1 6 1206 228 246 100 14 chr9 81484432 81484502 -42591670 + MLT1A1 LTR MaLR 239 314 -94 6 1206 240 86 0 0 chr9 81484525 81484560 -42591612 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1206 248 346 50 99 chr9 81485526 81485728 -42590444 + MER102b DNA MER1_type 45 236 -105 6 1206 778 282 16 99 chr9 81485774 81486077 -42590095 - B4 SINE B4 -12 280 3 6 1206 1783 222 26 43 chr9 81486237 81486355 -42589817 - Lx9 LINE L1 -267 7377 7257 6 1206 3019 40 42 5 chr9 81486355 81486737 -42589435 + MTA_Mm LTR MaLR 1 396 0 6 1206 1783 222 26 43 chr9 81486737 81487080 -42589092 - Lx9 LINE L1 -388 7256 6924 6 1206 276 205 48 12 chr9 81487219 81487303 -42588869 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 6 1206 480 275 0 30 chr9 81487785 81487920 -42588252 + B1F SINE Alu 19 149 0 6 1206 875 201 136 0 chr9 81488203 81488402 -42587770 + URR1A DNA MER1_type 1 226 0 6 1206 21 36 0 0 chr9 81488460 81488488 -42587684 + AT_rich Low_complexity Low_complexity 1 28 0 6 1206 593 159 0 35 chr9 81489313 81489456 -42586716 + GA-rich Low_complexity Low_complexity 3 140 0 6 1206 209 288 0 0 chr9 81489456 81489515 -42586657 + A-rich Low_complexity Low_complexity 3 61 0 6 1206 280 141 0 45 chr9 81490323 81490390 -42585782 + CT-rich Low_complexity Low_complexity 3 66 0 6 1206 1131 253 101 40 chr9 81490409 81490804 -42585368 + MTD LTR MaLR 1 419 0 6 1206 258 32 0 0 chr9 81490841 81490872 -42585300 + (TGG)n Simple_repeat Simple_repeat 2 32 0 6 1206 647 281 86 11 chr9 81490878 81491065 -42585107 - B3 SINE B2 -15 201 1 6 1206 396 339 36 0 chr9 81491989 81492101 -42584071 - RSINE1 SINE B4 -37 128 13 6 1206 220 91 0 43 chr9 81492265 81492311 -42583861 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1206 285 228 87 0 chr9 81492614 81492696 -42583476 + L1MC5 LINE L1 6710 6836 -1159 6 1206 8411 100 9 5 chr9 81492833 81494054 -42582118 - Lx3_Mus LINE L1 -1 7008 5783 6 1206 7264 71 41 0 chr9 81494054 81495125 -42581047 - L1Md_F2 LINE L1 -2 6580 5477 6 1206 462 309 184 24 chr9 81495125 81495380 -42580792 + LTR41 LTR ERVL 442 737 -31 6 1206 327 154 0 0 chr9 81495809 81495874 -42580298 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1206 293 356 75 54 chr9 81495888 81496167 -42580005 - B4A SINE B4 0 292 8 6 1206 23 0 0 0 chr9 81497527 81497550 -42578622 + AT_rich Low_complexity Low_complexity 1 23 0 6 1206 32 0 0 0 chr9 81497939 81497971 -42578201 + AT_rich Low_complexity Low_complexity 1 32 0 6 1206 258 304 10 10 chr9 81498001 81498104 -42578068 + L1MD LINE L1 4469 4571 -1575 6 1206 840 29 0 0 chr9 81498487 81498590 -42577582 + (TC)n Simple_repeat Simple_repeat 1 103 0 6 1206 633 270 43 77 chr9 81498609 81498842 -42577330 - Lx8 LINE L1 -148 7325 7101 6 1206 351 314 50 36 chr9 81500469 81500608 -42575564 + B4A SINE B4 1 141 -151 1 1206 6992 88 19 29 chr9 81501128 81501985 -42574187 + MusHAL1 LINE L1 1315 2185 -527 2 1206 2950 81 10 0 chr9 81501985 81502381 -42573791 - MTB LTR MaLR 0 400 1 3 1206 6992 88 19 29 chr9 81502381 81502539 -42573633 + MusHAL1 LINE L1 2186 2346 -366 2 1206 3518 106 15 35 chr9 81502539 81503088 -42573084 + Lx3A LINE L1 6442 6979 -2 4 1206 6992 88 19 29 chr9 81503088 81503198 -42572974 + MusHAL1 LINE L1 2347 2430 -282 2 1206 2277 153 115 9 chr9 81503227 81503688 -42572484 + L1_Mm LINE L1 5337 5846 -37 5 1206 1673 155 7 0 chr9 81503689 81503979 -42572193 + Lx2 LINE L1 6705 6996 -1 6 1206 206 135 27 0 chr9 81505011 81505048 -42571124 + (CTG)n Simple_repeat Simple_repeat 1 38 0 7 1206 1103 203 9 14 chr9 81505477 81505697 -42570475 - URR1A DNA MER1_type 0 226 8 8 1206 233 57 29 0 chr9 81506190 81506225 -42569947 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 9 1206 232 222 19 0 chr9 81506444 81506498 -42569674 + B4A SINE B4 2 56 -236 1 1206 26 0 0 0 chr9 81506630 81506656 -42569516 + AT_rich Low_complexity Low_complexity 1 26 0 1 1206 779 231 32 101 chr9 81506699 81507110 -42569062 - ORR1C2 LTR MaLR 0 384 24 1 1206 582 338 20 36 chr9 81507296 81507545 -42568627 + B4A SINE B4 1 245 -47 1 1206 29 60 0 0 chr9 81507645 81507695 -42568477 + AT_rich Low_complexity Low_complexity 1 50 0 1 1206 36825 6 0 0 chr9 81507710 81513295 -42562877 + L1Md_A LINE L1 1 5586 -297 1 1206 9078 2 0 0 chr9 81513295 81514291 -42561881 + L1Md_A LINE L1 5587 6582 0 1 1206 198 143 0 0 chr9 81514485 81514520 -42561652 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1206 305 302 73 52 chr9 81514582 81514718 -42561454 + MER20 DNA MER1_type 80 218 -1 1 1206 300 243 0 0 chr9 81517930 81518041 -42558131 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 1206 848 135 7 0 chr9 81520187 81520335 -42555837 + (GAAA)n Simple_repeat Simple_repeat 1 149 0 1 1206 486 0 0 0 chr9 81523655 81523709 -42552463 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1206 375 41 0 0 chr9 81523709 81523757 -42552415 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1207 327 130 0 0 chr9 81527173 81527227 -42548945 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 2 1207 483 18 0 0 chr9 81529457 81529513 -42546659 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 1207 220 188 0 40 chr9 81529927 81529977 -42546195 + T-rich Low_complexity Low_complexity 3 50 0 2 1207 3476 51 2 2 chr9 81529988 81530417 -42545755 - L1_Mus1 LINE L1 -1 6566 6138 2 1207 202 109 43 21 chr9 81530905 81530952 -42545220 + (TATAA)n Simple_repeat Simple_repeat 1 48 0 2 1207 1718 167 81 57 chr9 81530995 81531364 -42544808 - ORR1C1 LTR MaLR 0 378 1 2 1207 494 379 54 0 chr9 81531931 81532171 -42544001 - MIRb SINE MIR -12 256 4 2 1207 581 230 111 0 chr9 81532866 81532992 -42543180 + B1_Mur3 SINE Alu 1 140 -9 2 1207 395 340 81 33 chr9 81534932 81535239 -42540933 + L1MEg LINE L1 646 967 -5117 3 1207 568 209 138 8 chr9 81535277 81535407 -42540765 + B1_Mur2 SINE Alu 3 149 0 3 1207 358 310 53 26 chr9 81536226 81536415 -42539757 + L1M5 LINE L1 5331 5524 -640 3 1207 1441 251 56 17 chr9 81536679 81537035 -42539137 - MTD LTR MaLR -14 405 36 3 1207 297 316 0 0 chr9 81537126 81537205 -42538967 - B4A SINE B4 -211 81 3 3 1207 278 305 79 26 chr9 81537206 81537435 -42538737 + L1M5 LINE L1 5515 5755 -424 3 1207 997 230 45 48 chr9 81537541 81537810 -42538362 + MTE2a LTR MaLR 112 379 0 3 1207 2378 69 68 3 chr9 81538991 81539312 -42536860 - ORR1A1 LTR MaLR -4 342 1 3 1207 7513 56 0 10 chr9 81539337 81540476 -42535696 - L1Md_F2 LINE L1 -13 6569 5442 3 1207 2141 80 0 0 chr9 81540476 81540776 -42535396 + L1_Mm LINE L1 2706 3005 -2878 3 1207 359 323 164 29 chr9 81542076 81542423 -42533749 - Kanga1d DNA Tc2 -215 394 1 3 1207 1247 102 0 51 chr9 81542752 81542948 -42533224 + B2_Mm2 SINE B2 1 186 -9 4 1207 8183 141 50 3 chr9 81543569 81545434 -42530738 - Lx4A LINE L1 0 7058 5091 4 1207 453 226 34 17 chr9 81545846 81545963 -42530209 - URR1A DNA MER1_type -107 119 1 4 1207 279 0 0 0 chr9 81546214 81546245 -42529927 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1207 332 323 82 101 chr9 81546429 81546577 -42529595 + L1M4c LINE L1 947 1091 -5293 4 1207 225 0 0 0 chr9 81546577 81546602 -42529570 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 4 1207 332 323 82 101 chr9 81546602 81547128 -42529044 + L1M4c LINE L1 1092 1608 -4776 4 1207 2401 206 67 32 chr9 81547425 81547948 -42528224 - RLTR20A LTR ERVK 0 541 1 4 1207 943 299 28 14 chr9 81547978 81548341 -42527831 + Lx8 LINE L1 6969 7336 -137 4 1207 28 0 0 0 chr9 81548426 81548454 -42527718 + AT_rich Low_complexity Low_complexity 1 28 0 4 1207 457 246 18 14 chr9 81548502 81548640 -42527532 + L1_Mur3 LINE L1 5353 5495 -388 4 1207 371 305 69 20 chr9 81548710 81548914 -42527258 + L1MA4 LINE L1 5690 5903 -397 5 1207 2446 111 49 26 chr9 81549196 81549622 -42526550 + Lx2 LINE L1 6560 6995 -2 5 1207 423 0 0 0 chr9 81549624 81549671 -42526501 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 5 1207 365 200 47 133 chr9 81549784 81549934 -42526238 + RMER15 LTR ERVL 25 161 -414 5 1207 273 372 13 52 chr9 81549926 81550079 -42526093 + RMER15 LTR ERVL 273 419 -156 5 1207 2418 140 163 20 chr9 81550118 81550572 -42525600 + RLTR28 LTR ERVL 2 520 -4 5 1207 566 252 7 20 chr9 81550858 81551004 -42525168 + B1_Mur1 SINE Alu 1 144 -5 5 1207 24 53 0 0 chr9 81552039 81552077 -42524095 + AT_rich Low_complexity Low_complexity 1 38 0 5 1207 5221 87 159 7 chr9 81552077 81552935 -42523237 - Lx3_Mus LINE L1 -8 7001 6036 5 1207 198 0 0 0 chr9 81552935 81552957 -42523215 + (TCCC)n Simple_repeat Simple_repeat 1 22 0 5 1207 5221 87 159 7 chr9 81552957 81553005 -42523167 - Lx3_Mus LINE L1 -974 6035 5958 5 1207 4865 85 13 0 chr9 81553003 81553711 -42522461 + L1_Mur1 LINE L1 2304 3020 -2866 5 1207 586 293 64 0 chr9 81554571 81554759 -42521413 + B3 SINE B2 4 203 -13 6 1207 1666 265 103 22 chr9 81554797 81555249 -42520923 + Lx8 LINE L1 4996 5500 -380 6 1207 3428 23 5 0 chr9 81555249 81555643 -42520529 + MTA_Mm LTR MaLR 1 396 0 6 1207 1666 285 95 47 chr9 81555643 81556437 -42519735 + Lx8 LINE L1 5501 6366 -1107 6 1207 1679 197 23 78 chr9 81556437 81556833 -42519339 + ORR1D1 LTR MaLR 1 374 0 6 1207 1540 302 89 67 chr9 81556833 81557180 -42518992 + Lx8 LINE L1 6367 6671 -802 6 1207 898 200 114 30 chr9 81557187 81557256 -42518916 - RLTR12A LTR ERVK 0 568 482 6 1207 414 0 0 0 chr9 81557256 81557302 -42518870 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1207 898 200 114 30 chr9 81557302 81557347 -42518825 - RLTR12A LTR ERVK -87 481 431 6 1207 5715 89 17 23 chr9 81557347 81558160 -42518012 + RLTR13C2 LTR ERVK 1 808 0 6 1207 898 200 114 30 chr9 81558160 81558281 -42517891 - RLTR12A LTR ERVK -138 430 313 6 1207 3549 13 2 0 chr9 81558758 81559153 -42517019 + MTA_Mm LTR MaLR 1 396 0 6 1207 330 314 33 25 chr9 81559586 81559707 -42516465 - B1F SINE Alu -4 145 24 6 1207 303 341 58 117 chr9 81559613 81559819 -42516353 - ID_B1 SINE B4 -26 198 5 6 1207 295 238 2 30 chr9 81560161 81560233 -42515939 - B3A SINE B2 -116 100 29 7 1207 555 263 125 101 chr9 81560926 81561329 -42514843 + L1MA6 LINE L1 3532 3958 -2185 7 1207 777 197 0 49 chr9 81561329 81561473 -42514699 + B1_Mur3 SINE Alu 3 139 -10 7 1207 207 0 0 0 chr9 81561475 81561498 -42514674 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 7 1207 555 263 125 101 chr9 81561498 81561716 -42514456 + L1MA6 LINE L1 3959 4171 -1972 7 1207 254 179 0 0 chr9 81561721 81561777 -42514395 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 7 1207 387 251 55 69 chr9 81561778 81561884 -42514288 + L1MA6 LINE L1 4179 4284 -1859 7 1207 204 40 0 0 chr9 81561884 81561909 -42514263 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 7 1207 387 251 55 69 chr9 81561909 81562020 -42514152 + L1MA6 LINE L1 4285 4393 -1750 7 1207 378 0 0 0 chr9 81562356 81562398 -42513774 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 7 1207 577 108 24 0 chr9 81562398 81562481 -42513691 - B1_Mus2 SINE Alu -14 133 49 7 1207 298 266 98 27 chr9 81562481 81562510 -42513662 - ID_B1 SINE B4 -14 210 91 7 1207 288 217 83 8 chr9 81562512 81562542 -42513630 + L1MA6 LINE L1 4943 4972 -1171 7 1207 3504 163 31 5 chr9 81562542 81563154 -42513018 + Lx LINE L1 6020 6647 -7 7 1207 288 217 83 8 chr9 81563154 81563244 -42512928 + L1MA6 LINE L1 4973 5071 -1072 7 1207 2860 82 108 7 chr9 81563244 81563652 -42512520 + RLTR44B LTR ERVK 1 449 0 8 1207 900 132 33 33 chr9 81563682 81563862 -42512310 + RLTR44-int LTR ERVK 123 302 -2510 8 1207 510 167 0 0 chr9 81564462 81564558 -42511614 + RLTR44-int LTR ERVK 778 873 -1939 8 1207 13024 49 2 2 chr9 81564558 81566213 -42509959 + RLTR44-int LTR ERVK 816 2470 -342 8 1207 224 54 54 0 chr9 81566213 81566250 -42509922 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 8 1207 1168 68 0 0 chr9 81566250 81566396 -42509776 - B1_Mus2 SINE Alu 0 147 2 8 1207 2907 36 0 0 chr9 81566397 81566755 -42509417 + RLTR44-int LTR ERVK 2455 2812 0 8 1207 262 346 7 0 chr9 81566755 81566908 -42509264 + L1MA6 LINE L1 5068 5221 -922 7 1207 667 287 109 53 chr9 81566922 81567306 -42508866 + L1MA6 LINE L1 5465 5880 -420 7 1207 3249 46 8 0 chr9 81567306 81567699 -42508473 - MTA_Mm LTR MaLR 0 396 1 8 1207 8674 52 6 4 chr9 81567699 81568795 -42507377 - MTA_Mm-int LTR MaLR 0 1098 1 8 1207 2911 28 106 0 chr9 81568795 81569153 -42507019 - MTA_Mm LTR MaLR 0 396 1 8 1207 667 287 109 53 chr9 81569153 81569241 -42506931 + L1MA6 LINE L1 5881 5964 -336 7 1207 225 0 0 0 chr9 81569308 81569333 -42506839 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 1207 1088 290 13 7 chr9 81569439 81569741 -42506431 - Lx8 LINE L1 -844 6629 6326 8 1207 24 0 0 0 chr9 81570175 81570199 -42505973 + AT_rich Low_complexity Low_complexity 1 24 0 8 1207 183 247 0 0 chr9 81572001 81572074 -42504098 + GA-rich Low_complexity Low_complexity 1 73 0 8 1207 23 33 0 0 chr9 81572116 81572146 -42504026 + AT_rich Low_complexity Low_complexity 1 30 0 8 1207 183 80 0 0 chr9 81572277 81572302 -42503870 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1207 395 286 56 67 chr9 81572436 81572616 -42503556 + B4 SINE B4 1 178 -114 9 1207 375 188 0 0 chr9 81572624 81572741 -42503431 + GA-rich Low_complexity Low_complexity 1 117 0 9 1207 528 45 0 0 chr9 81572747 81572814 -42503358 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1207 207 0 0 0 chr9 81572814 81572836 -42503336 + (GA)n Simple_repeat Simple_repeat 2 24 0 9 1207 347 363 22 0 chr9 81573054 81573189 -42502983 + MER58A DNA MER1_type 86 223 -1 9 1207 472 344 38 129 chr9 81573444 81573553 -42502619 + B4A SINE B4 5 105 -187 9 1207 998 111 0 32 chr9 81573553 81573739 -42502433 + (GGA)n Simple_repeat Simple_repeat 1 180 0 9 1207 472 344 38 129 chr9 81573739 81573858 -42502314 + B4A SINE B4 106 197 -95 9 1207 4304 126 65 15 chr9 81573858 81574593 -42501579 - Lx3B LINE L1 -1 6972 6201 9 1207 472 344 38 129 chr9 81574593 81574680 -42501492 + B4A SINE B4 198 292 0 9 1207 183 404 29 0 chr9 81576211 81576315 -42499857 - MIR3 SINE MIR -21 187 81 9 1207 189 250 45 45 chr9 81576372 81576439 -42499733 + MIRm SINE MIR 103 169 -107 9 1207 279 0 0 0 chr9 81577698 81577729 -42498443 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1207 650 289 199 13 chr9 81577900 81578292 -42497880 - MLT1D LTR MaLR 0 505 41 1 1207 318 318 59 59 chr9 81578320 81578507 -42497665 + ORR1D1 LTR MaLR 1 187 -187 1 1207 5908 136 11 11 chr9 81579625 81580560 -42495612 + Lx3B LINE L1 6035 6969 -4 1 1207 1356 232 21 7 chr9 81580937 81581228 -42494944 + MTC LTR MaLR 127 421 0 1 1207 23 68 0 0 chr9 81581418 81581462 -42494710 + AT_rich Low_complexity Low_complexity 1 44 0 1 1207 228 356 98 0 chr9 81582362 81582494 -42493678 - MER97c DNA MER1_type? -911 179 35 1 1207 419 322 60 20 chr9 81582612 81582761 -42493411 - LTR16E1 LTR ERVL -118 420 266 1 1207 296 135 0 0 chr9 81583318 81583370 -42492802 + L1_Mus3 LINE L1 6562 6613 -25 1 1207 229 338 45 89 chr9 81583453 81583632 -42492540 + MLT1F2 LTR MaLR 372 542 -18 1 1207 38 61 0 0 chr9 81584058 81584124 -42492048 + AT_rich Low_complexity Low_complexity 1 66 0 1 1207 234 211 19 0 chr9 81584127 81584179 -42491993 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 1 1207 546 326 0 0 chr9 81584217 81584358 -42491814 - RSINE1 SINE B4 -22 143 3 1 1207 22 56 0 0 chr9 81584411 81584447 -42491725 + AT_rich Low_complexity Low_complexity 1 36 0 1 1207 1053 302 32 13 chr9 81584488 81584797 -42491375 - RMER15 LTR ERVL 0 575 261 1 1207 501 227 6 17 chr9 81584905 81585084 -42491088 + GA-rich Low_complexity Low_complexity 2 178 0 1 1207 391 328 97 8 chr9 81585095 81585332 -42490840 + L2a LINE L2 2914 3171 -255 1 1207 26 30 0 0 chr9 81585386 81585419 -42490753 + AT_rich Low_complexity Low_complexity 1 33 0 1 1207 324 0 0 0 chr9 81585518 81585554 -42490618 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1207 436 271 91 35 chr9 81585556 81585755 -42490417 - Lx9 LINE L1 -356 7288 7079 1 1207 180 179 0 0 chr9 81585811 81585850 -42490322 + T-rich Low_complexity Low_complexity 5 43 0 1 1207 302 319 106 41 chr9 81586148 81586318 -42489854 + MIRb SINE MIR 13 193 -75 1 1207 183 156 0 0 chr9 81586543 81586575 -42489597 + A-rich Low_complexity Low_complexity 3 34 0 1 1207 1597 193 105 6 chr9 81586635 81586788 -42489384 + ORR1D1 LTR MaLR 9 162 -212 1 1207 213 94 0 0 chr9 81586788 81586820 -42489352 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 1207 1597 193 105 6 chr9 81586820 81586999 -42489173 + ORR1D1 LTR MaLR 163 373 -1 1 1207 280 172 68 17 chr9 81587248 81587307 -42488865 - L3 LINE CR1 -1089 3400 3339 1 1207 495 0 0 0 chr9 81589491 81589546 -42486626 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1207 357 24 0 0 chr9 81589546 81589587 -42486585 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1207 850 281 175 23 chr9 81589675 81590280 -42485892 - L1MA6 LINE L1 -187 6113 5417 1 1207 247 274 51 91 chr9 81590366 81590563 -42485609 - L1MA6 LINE L1 -856 5287 5099 1 1207 1864 288 64 16 chr9 81591157 81592211 -42483961 - L1MA6 LINE L1 -1129 5014 3911 1 1207 2677 136 97 6 chr9 81592219 81592714 -42483458 - Lx3B LINE L1 -6 6967 6428 1 1207 1743 175 19 6 chr9 81592711 81593074 -42483098 - Lx3B LINE L1 -698 6275 5908 1 1207 24957 126 12 31 chr9 81593076 81596568 -42479604 - L1_Mus3 LINE L1 -1 6637 3303 1 1207 216 86 0 0 chr9 81596568 81596603 -42479569 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1207 24957 154 12 59 chr9 81596603 81599334 -42476838 - L1_Mus3 LINE L1 -2581 3302 636 1 1207 1616 135 69 0 chr9 81599333 81599607 -42476565 - Lx3B LINE L1 -88 5798 5506 1 1207 2481 142 25 69 chr9 81599606 81600054 -42476118 + Lx3B LINE L1 4950 5359 -527 1 1207 396 0 0 0 chr9 81600054 81600098 -42476074 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 1207 2481 142 25 69 chr9 81600098 81600211 -42475961 + L1_Mur1 LINE L1 5360 5485 -401 1 1207 347 277 206 19 chr9 81600216 81600731 -42475441 - L1MA6 LINE L1 -2212 3931 3321 1 1207 1264 65 118 11 chr9 81600734 81600920 -42475252 - L1Md_F2 LINE L1 -12 6570 6365 1 1207 424 297 30 29 chr9 81601016 81601156 -42475016 + B1F SINE Alu 10 149 0 1 1207 798 298 18 25 chr9 81601589 81601871 -42474301 - B4A SINE B4 -10 282 3 1 1207 271 387 13 19 chr9 81602680 81602838 -42473334 - RMER15 LTR ERVL -125 450 294 1 1207 1681 312 28 35 chr9 81603111 81603858 -42472314 - RMER15-int LTR ERVL -111 4888 4147 1 1207 1949 243 17 13 chr9 81604188 81604651 -42471521 + Lx5 LINE L1 6151 6615 -435 1 1207 533 273 6 46 chr9 81604647 81604820 -42471352 + Lx5 LINE L1 6881 7046 -4 1 1207 239 284 73 57 chr9 81604903 81605026 -42471146 - RMER15 LTR ERVL -115 460 336 1 1207 366 23 0 0 chr9 81605233 81605276 -42470896 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1207 1356 268 92 16 chr9 81605581 81606222 -42469950 + L1MA5 LINE L1 3547 4236 -1907 1 1207 509 243 105 59 chr9 81606360 81606683 -42469489 + L1MA5 LINE L1 4252 4589 -1554 1 1207 1069 92 0 0 chr9 81606768 81606909 -42469263 + B1_Mm SINE Alu 2 142 -5 1 1207 202 161 17 51 chr9 81606909 81606968 -42469204 + A-rich Low_complexity Low_complexity 4 60 0 1 1207 221 163 0 0 chr9 81606918 81606961 -42469211 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1207 1221 86 0 0 chr9 81606970 81607202 -42468970 + (GAA)n Simple_repeat Simple_repeat 1 232 0 1 1207 981 279 115 55 chr9 81607574 81608315 -42467857 + L1MA5 LINE L1 4592 5376 -767 1 1207 624 338 18 18 chr9 81608368 81608654 -42467518 - B4A SINE B4 -5 287 2 1 1207 1340 280 48 80 chr9 81608670 81609520 -42466652 + L1MA5 LINE L1 5388 6210 -90 1 1207 1508 112 0 9 chr9 81612098 81612314 -42463858 - L1_Mur2 LINE L1 -190 5687 5474 1 1207 1716 266 64 15 chr9 81612309 81612763 -42463409 + Lx5 LINE L1 6548 7023 -27 1 1207 505 305 0 0 chr9 81613110 81613241 -42462931 - ID_B1 SINE B4 -1 223 93 1 1207 201 39 0 0 chr9 81613671 81613697 -42462475 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1207 5695 142 15 15 chr9 81615914 81616861 -42459311 - Lx3A LINE L1 0 6981 6035 1 1207 21 36 0 0 chr9 81617174 81617202 -42458970 + AT_rich Low_complexity Low_complexity 1 28 0 1 1207 519 202 0 0 chr9 81618495 81618609 -42457563 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 1207 393 22 0 0 chr9 81618598 81618644 -42457528 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1207 495 228 36 80 chr9 81618644 81618782 -42457390 - B4A SINE B4 0 292 161 1 1207 372 193 0 0 chr9 81618867 81618981 -42457191 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 1207 272 216 8 67 chr9 81619000 81619134 -42457038 + (TATAA)n Simple_repeat Simple_repeat 5 130 0 1 1207 401 145 13 0 chr9 81619135 81619211 -42456961 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1207 1964 189 154 101 chr9 81619405 81619982 -42456190 + RMER19C LTR ERVK 1 608 -3 1 1207 3886 98 14 3 chr9 81620750 81621323 -42454849 - L1_Mur1 LINE L1 -392 5494 4916 1 1207 16267 55 2 2 chr9 81621310 81624102 -42452070 - L1Md_F2 LINE L1 0 6582 3791 1 1207 9701 82 12 1 chr9 81624102 81624372 -42451800 - L1_Mur1 LINE L1 -971 4915 4645 1 1207 189 0 0 0 chr9 81624372 81624393 -42451779 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1207 9701 82 12 1 chr9 81624393 81625507 -42450665 - L1_Mur1 LINE L1 -1242 4644 3517 1 1207 8386 122 13 31 chr9 81625507 81627009 -42449163 + Lx3A LINE L1 5501 6971 -10 1 1207 2595 297 70 63 chr9 81627826 81628950 -42447222 + Lx8 LINE L1 6338 7469 -4 1 1207 235 0 0 54 chr9 81628957 81628994 -42447178 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1207 237 33 0 0 chr9 81628994 81629024 -42447148 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1207 195 204 0 0 chr9 81629852 81629901 -42446271 + T-rich Low_complexity Low_complexity 1 49 0 1 1207 5007 116 40 12 chr9 81629910 81630711 -42445461 - Lx3C LINE L1 -3 6973 6151 1 1207 279 322 33 0 chr9 81631000 81631090 -42445082 + RSINE1 SINE B4 12 104 -61 1 1207 194 105 26 0 chr9 81631442 81631480 -42444692 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1207 288 0 0 0 chr9 81631671 81631703 -42444469 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1207 282 310 43 118 chr9 81633011 81633172 -42443000 + MTEb LTR MaLR 20 168 -211 1 1207 288 77 0 0 chr9 81633199 81633238 -42442934 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1 1207 753 207 0 7 chr9 81633259 81633405 -42442767 - B1_Mus1 SINE Alu 0 148 4 1 1207 376 225 0 137 chr9 81633405 81633432 -42442740 - MT2B LTR ERVL -448 153 146 1 1207 317 306 96 7 chr9 81633621 81633756 -42442416 + B1F1 SINE Alu 3 149 0 1 1207 4823 27 2 0 chr9 81633872 81634434 -42441738 + L1Md_T LINE L1 6020 6582 0 1 1207 180 77 0 0 chr9 81634449 81634475 -42441697 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 1 1207 326 276 35 56 chr9 81636839 81636889 -42439283 - MTE-int LTR MaLR -89 1491 1449 1 1207 836 199 124 0 chr9 81636889 81637090 -42439082 - URR1A DNA MER1_type 0 226 1 1 1207 326 276 35 56 chr9 81637090 81637181 -42438991 - MTE-int LTR MaLR -132 1448 1353 1 1207 2049 167 58 19 chr9 81637248 81637627 -42438545 + ORR1B1 LTR MaLR 1 394 0 1 1207 258 300 5 0 chr9 81637658 81637735 -42438437 + PB1D10 SINE Alu 14 93 -56 1 1207 249 288 0 0 chr9 81637744 81637817 -42438355 + Lx7 LINE L1 7024 7096 -600 1 1207 266 318 11 0 chr9 81637812 81637900 -42438272 + Lx7 LINE L1 7213 7301 -395 1 1207 209 197 25 50 chr9 81637929 81638009 -42438163 + T-rich Low_complexity Low_complexity 2 79 0 1 1207 476 356 108 66 chr9 81638377 81639000 -42437172 - MTE-int LTR MaLR -584 996 348 1 1207 344 344 51 43 chr9 81639137 81639392 -42436780 - MLT-int LTR MaLR -1325 410 154 1 1207 648 38 0 0 chr9 81639516 81639595 -42436577 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1207 715 275 35 20 chr9 81639597 81639794 -42436378 + B3 SINE B2 16 215 -1 1 1207 2463 71 0 3 chr9 81639970 81640294 -42435878 - L1_Mus1 LINE L1 0 6567 6245 1 1207 261 0 0 0 chr9 81640368 81640397 -42435775 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1207 419 323 0 0 chr9 81640945 81641038 -42435134 + B1_Mur2 SINE Alu 1 93 -56 1 1207 1191 53 0 0 chr9 81641049 81641200 -42434972 + (GAA)n Simple_repeat Simple_repeat 2 152 0 1 1207 432 0 0 0 chr9 81641204 81641252 -42434920 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 1 1207 394 339 35 98 chr9 81641418 81641703 -42434469 - RMER15 LTR ERVL -23 552 286 1 1207 226 254 79 71 chr9 81641732 81641859 -42434313 - RMER15 LTR ERVL -445 130 3 1 1207 503 256 181 6 chr9 81641957 81642134 -42434038 - B3 SINE B2 -5 211 4 1 1207 2013 233 72 14 chr9 81642705 81643192 -42432980 + RMER20A LTR ERVK 2 516 0 1 1207 258 314 90 57 chr9 81644170 81644720 -42431452 + L1ME1 LINE L1 4505 5098 -1048 1 1207 278 324 103 55 chr9 81645034 81645476 -42430696 + L1ME1 LINE L1 5476 5936 -243 1 1207 180 0 0 0 chr9 81645476 81645496 -42430676 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1207 278 324 103 55 chr9 81645496 81645704 -42430468 + L1ME1 LINE L1 5937 6156 -23 1 1207 614 158 18 0 chr9 81645795 81645909 -42430263 - URR1B DNA MER1_type 0 225 110 1 1207 433 349 165 38 chr9 81645995 81646335 -42429837 + MER76 LTR ERVL 180 562 -129 1 1207 334 354 8 33 chr9 81648127 81648247 -42427925 - RSINE1 SINE B4 -45 120 4 1 1207 249 180 0 0 chr9 81648273 81648323 -42427849 + (CATA)n Simple_repeat Simple_repeat 3 52 0 2 1207 2284 217 86 32 chr9 81648442 81648462 -42427710 - RMER1B Other Other -3 1063 1035 2 1207 234 0 0 0 chr9 81648462 81648488 -42427684 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1207 2284 217 86 32 chr9 81648488 81649061 -42427111 - RMER1B Other Other -32 1034 439 2 1207 576 29 0 0 chr9 81649079 81649149 -42427023 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1207 287 277 8 0 chr9 81649151 81649270 -42426902 + (TTTG)n Simple_repeat Simple_repeat 2 121 0 2 1207 21 36 0 0 chr9 81650321 81650349 -42425823 + AT_rich Low_complexity Low_complexity 1 28 0 2 1207 468 121 0 0 chr9 81652567 81652658 -42423514 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 1207 848 181 0 26 chr9 81652930 81653083 -42423089 - B1_Mur3 SINE Alu 0 149 1 2 1207 378 0 0 0 chr9 81653625 81653667 -42422505 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 1207 557 101 22 0 chr9 81655014 81655103 -42421069 + (CATA)n Simple_repeat Simple_repeat 1 91 0 2 1207 3723 242 80 14 chr9 81655415 81656430 -42419742 + Lx9 LINE L1 6561 7642 -2 2 1207 486 212 40 0 chr9 81656655 81656754 -42419418 + B1_Mur4 SINE Alu 48 150 0 2 1207 2089 60 0 4 chr9 81657071 81657337 -42418835 + L1_Mus1 LINE L1 6296 6560 -7 2 1208 369 0 0 0 chr9 81658268 81658309 -42417863 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1208 1812 90 26 4 chr9 81658608 81658875 -42417297 + L1_Mus3 LINE L1 6366 6638 0 2 1208 230 0 33 0 chr9 81658901 81658931 -42417241 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 1208 360 0 0 0 chr9 81660374 81660414 -42415758 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1208 1137 82 0 7 chr9 81660646 81660794 -42415378 + B1_Mus1 SINE Alu 2 148 0 2 1208 291 36 53 35 chr9 81660795 81660852 -42415320 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 2 1208 216 0 0 0 chr9 81660853 81660877 -42415295 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1208 180 150 122 24 chr9 81663074 81663115 -42413057 - L3 LINE CR1 -4396 93 49 2 1208 298 211 14 0 chr9 81663411 81663482 -42412690 - Lx9 LINE L1 -53 7591 7520 2 1208 552 30 0 0 chr9 81663484 81663550 -42412622 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2 1208 916 156 61 38 chr9 81663559 81663772 -42412400 - Lx9 LINE L1 -186 7458 7241 2 1208 238 274 92 42 chr9 81664985 81665202 -42410970 - L1M5 LINE L1 -3052 3094 2867 2 1208 1992 185 147 7 chr9 81665506 81665830 -42410342 - RMER6D LTR ERVK 0 720 369 2 1208 297 0 0 0 chr9 81665830 81665863 -42410309 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1208 1992 185 147 7 chr9 81665863 81665974 -42410198 - RMER6D LTR ERVK -352 368 224 2 1208 2670 154 14 41 chr9 81665975 81666468 -42409704 + Lx2A LINE L1 6192 6671 -337 2 1208 6895 16 0 0 chr9 81666463 81667263 -42408909 - L1_Mm LINE L1 -1187 4696 3897 2 1208 5712 30 1 0 chr9 81667263 81667936 -42408236 + L1Md_A LINE L1 5909 6582 0 2 1208 2412 101 9 0 chr9 81667938 81668285 -42407887 + Lx2A LINE L1 6659 7008 0 2 1208 988 155 85 35 chr9 81668289 81668489 -42407683 - RMER6D LTR ERVK -480 210 1 2 1208 328 381 0 0 chr9 81668489 81668594 -42407578 - PB1D10 SINE Alu -12 105 1 2 1208 753 138 49 17 chr9 81668774 81669051 -42407121 - ORR1B1 LTR MaLR 0 394 1 2 1208 381 22 0 0 chr9 81670249 81670295 -42405877 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1208 244 298 32 0 chr9 81671342 81671436 -42404736 - RMER17C LTR ERVK -136 274 178 2 1208 182 118 0 29 chr9 81673229 81673264 -42402908 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 2 1208 315 0 0 0 chr9 81673691 81673726 -42402446 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1208 330 195 0 89 chr9 81673764 81673854 -42402318 - Lx6 LINE L1 -8 7452 7371 2 1208 25 31 0 0 chr9 81675619 81675651 -42400521 + AT_rich Low_complexity Low_complexity 1 32 0 2 1208 1517 350 57 16 chr9 81675743 81676569 -42399603 - Lx8 LINE L1 -157 7316 6457 2 1208 2140 192 11 11 chr9 81676785 81677248 -42398924 - L1_Mur2 LINE L1 -1276 4601 4139 2 1208 3412 240 147 65 chr9 81677295 81678961 -42397211 + Lx5 LINE L1 4622 6456 -594 2 1208 311 60 0 20 chr9 81678961 81679012 -42397160 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 2 1208 3279 298 45 99 chr9 81679012 81679626 -42396546 + Lx5 LINE L1 6457 7028 -22 2 1208 198 0 0 0 chr9 81679646 81679668 -42396504 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2 1208 180 83 41 20 chr9 81679680 81679729 -42396443 + (CAA)n Simple_repeat Simple_repeat 3 52 0 2 1208 708 315 20 0 chr9 81681257 81681454 -42394718 - B3 SINE B2 -15 201 1 2 1208 1561 255 99 24 chr9 81681650 81681983 -42394189 + Lx7 LINE L1 7079 7430 -266 2 1208 369 0 0 0 chr9 81681983 81682024 -42394148 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1208 1561 255 99 24 chr9 81682024 81682264 -42393908 + Lx7 LINE L1 7431 7695 -1 2 1208 3785 154 19 3 chr9 81682579 81683212 -42392960 + Lx LINE L1 6009 6651 -3 2 1208 444 111 0 0 chr9 81683330 81683411 -42392761 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1208 491 301 90 44 chr9 81684148 81684512 -42391660 - MTD LTR MaLR -1 378 1 2 1208 547 37 37 0 chr9 81685552 81685633 -42390539 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 2 1208 635 314 60 13 chr9 81686017 81686249 -42389923 + MER31A LTR ERV1 64 306 -179 2 1208 28 29 0 0 chr9 81686738 81686773 -42389399 + AT_rich Low_complexity Low_complexity 1 35 0 2 1208 331 353 108 0 chr9 81687448 81687615 -42388557 + Charlie12 DNA MER1_type 1 185 -2688 2 1208 584 62 12 0 chr9 81687616 81687697 -42388475 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 2 1208 528 45 0 0 chr9 81687805 81687872 -42388300 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 2 1208 387 0 0 0 chr9 81687873 81687916 -42388256 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1208 388 297 161 40 chr9 81688810 81689049 -42387123 + L1MEc LINE L1 1031 1313 -5087 2 1208 2031 117 3 3 chr9 81689049 81689358 -42386814 + Lx LINE L1 6344 6652 -2 2 1208 388 306 267 25 chr9 81689358 81689745 -42386427 + L1MEc LINE L1 1314 1779 -4636 2 1208 1092 91 0 0 chr9 81689822 81689976 -42386196 + (GA)n Simple_repeat Simple_repeat 2 155 0 2 1208 327 270 9 0 chr9 81690207 81690318 -42385854 + L1MC1 LINE L1 5830 5941 -403 2 1208 334 335 51 11 chr9 81690410 81690588 -42385584 + L1MC1 LINE L1 5976 6160 -173 2 1208 1162 268 83 3 chr9 81690648 81691034 -42385138 + MTD LTR MaLR 1 417 -2 2 1208 237 301 11 46 chr9 81691035 81691122 -42385050 + L1MC1 LINE L1 6166 6249 -84 2 1208 343 131 2 61 chr9 81691162 81691246 -42384926 - L1Md_A LINE L1 -4 6580 6505 2 1208 37 0 0 0 chr9 81692267 81692304 -42383868 + AT_rich Low_complexity Low_complexity 1 37 0 2 1208 186 103 0 0 chr9 81692305 81692334 -42383838 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1208 5885 236 77 40 chr9 81692414 81694023 -42382149 - Lx6 LINE L1 -11 7449 5782 2 1208 734 230 63 0 chr9 81694010 81694201 -42381971 - Lx6 LINE L1 0 7460 7258 2 1208 3585 184 56 8 chr9 81694201 81694956 -42381216 - L1_Mur3 LINE L1 -80 5800 5010 2 1208 419 350 145 48 chr9 81695015 81695435 -42380737 + L1ME2 LINE L1 5570 6030 -134 2 1208 489 363 7 7 chr9 81695533 81695680 -42380492 + B4A SINE B4 1 147 -145 2 1208 30 0 0 0 chr9 81696774 81696804 -42379368 + AT_rich Low_complexity Low_complexity 1 30 0 2 1208 2520 140 50 5 chr9 81697510 81697619 -42378553 - Lx2B LINE L1 -10 6990 6883 2 1208 189 0 0 0 chr9 81697619 81697640 -42378532 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 2 1208 2520 140 50 5 chr9 81697640 81697969 -42378203 - Lx2B LINE L1 -118 6882 6533 2 1208 336 143 0 0 chr9 81698269 81698325 -42377847 + (TTCTCC)n Simple_repeat Simple_repeat 3 58 0 2 1208 306 0 0 0 chr9 81698570 81698604 -42377568 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1208 387 0 0 0 chr9 81698604 81698647 -42377525 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1208 1741 228 17 17 chr9 81698697 81699104 -42377068 + MTB_Mm LTR MaLR 1 407 0 2 1208 21 0 0 0 chr9 81699385 81699406 -42376766 + AT_rich Low_complexity Low_complexity 1 21 0 2 1208 1285 113 152 5 chr9 81699474 81699745 -42376427 - L1_Mus3 LINE L1 -392 6190 5883 2 1208 3641 87 8 4 chr9 81699745 81700265 -42375907 + L1_Mus3 LINE L1 6116 6637 -1 2 1208 235 261 245 7 chr9 81700421 81700564 -42375608 - L1MEc LINE L1 -5915 485 309 2 1208 378 326 73 61 chr9 81700918 81701163 -42375009 - RMER5 LTR ERV1 -193 341 94 2 1208 368 295 161 48 chr9 81701077 81701326 -42374846 + MLT1C LTR MaLR 183 459 -8 2 1208 204 40 0 0 chr9 81701445 81701470 -42374702 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1208 601 260 134 9 chr9 81702262 81702598 -42373574 - Lx8 LINE L1 -3 7470 7093 2 1208 733 284 165 58 chr9 81702597 81703046 -42373126 - Lx8 LINE L1 -487 6986 6490 2 1208 613 317 5 25 chr9 81703072 81703276 -42372896 - Lx8 LINE L1 -1069 6404 6205 2 1208 1654 99 198 0 chr9 81703459 81703732 -42372440 - ORR1A2 LTR MaLR 0 327 1 2 1208 4621 58 14 7 chr9 81704371 81704963 -42371209 + L1_Mus1 LINE L1 5972 6567 0 2 1208 462 268 16 8 chr9 81705539 81705667 -42370505 + L1Md_F LINE L1 578 706 -5813 2 1208 2812 169 4 61 chr9 81705736 81706250 -42369922 + L1VL4 LINE L1 570 1081 -5438 2 1208 1072 102 0 0 chr9 81706250 81706397 -42369775 + B1_Mus1 SINE Alu 2 148 0 2 1208 15078 113 17 5 chr9 81706397 81708845 -42367327 + L1VL4 LINE L1 1082 3536 -281 2 1208 519 145 0 0 chr9 81708887 81708970 -42367202 + L1_Mur2 LINE L1 4625 4707 -1170 2 1208 433 143 15 118 chr9 81708962 81709097 -42367075 + L1_Mus3 LINE L1 6511 6631 -7 2 1208 21 0 0 0 chr9 81709097 81709118 -42367054 + AT_rich Low_complexity Low_complexity 1 21 0 2 1208 501 47 0 0 chr9 81709440 81709504 -42366668 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1208 254 232 21 0 chr9 81709560 81709655 -42366517 + L1_Mur3 LINE L1 3655 3751 -2129 2 1208 231 213 93 16 chr9 81709632 81709761 -42366411 + Lx9 LINE L1 7504 7642 -2 2 1208 666 109 12 43 chr9 81710111 81710274 -42365898 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 2 1208 28 0 0 0 chr9 81711600 81711628 -42364544 + AT_rich Low_complexity Low_complexity 1 28 0 2 1208 1842 271 83 35 chr9 81712349 81713013 -42363159 + RCHARR1 DNA MER1_type 14 709 -265 2 1208 511 246 144 34 chr9 81713981 81714217 -42361955 + RCHARR1 DNA MER1_type 700 961 -13 2 1208 550 324 21 27 chr9 81715112 81715299 -42360873 - B3A SINE B2 -11 187 2 2 1208 441 0 0 0 chr9 81715520 81715569 -42360603 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1208 3923 281 42 16 chr9 81716198 81717406 -42358766 + Lx9 LINE L1 6378 7617 -27 2 1208 32 0 0 0 chr9 81717427 81717459 -42358713 + AT_rich Low_complexity Low_complexity 1 32 0 2 1208 396 0 0 0 chr9 81717513 81717557 -42358615 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1208 3060 66 8 2 chr9 81717971 81718365 -42357807 + MTA_Mm LTR MaLR 1 396 0 3 1208 320 43 22 0 chr9 81719692 81719738 -42356434 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1208 252 86 0 0 chr9 81719819 81719854 -42356318 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1208 1002 110 0 27 chr9 81719855 81720005 -42356167 - B1_Mus1 SINE Alu -2 146 1 3 1208 1853 136 3 7 chr9 81720006 81720302 -42355870 - RLTR10E LTR ERVK -16 295 1 3 1208 510 103 0 0 chr9 81720428 81720506 -42355666 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 3 1208 4227 123 0 8 chr9 81720506 81721137 -42355035 - Lx2A1 LINE L1 0 7008 6383 3 1208 21 0 0 0 chr9 81721207 81721228 -42354944 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 913 241 30 0 chr9 81721243 81721442 -42354730 - ORR1C1 LTR MaLR -4 374 170 3 1208 3335 35 5 0 chr9 81721517 81721911 -42354261 + MTA_Mm LTR MaLR 1 396 0 3 1208 387 0 0 0 chr9 81723467 81723510 -42352662 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1208 313 322 91 38 chr9 81724232 81724519 -42351653 - L1ME3 LINE L1 -21 6141 5840 3 1208 248 244 346 0 chr9 81724684 81724762 -42351410 - PB1D10 SINE Alu -11 106 2 3 1208 1361 279 99 47 chr9 81724762 81725590 -42350582 - L1MB3 LINE L1 -41 6142 5277 3 1208 778 336 49 49 chr9 81725846 81726174 -42349998 + RCHARR1 DNA MER1_type 3 330 -644 3 1208 24 0 0 0 chr9 81726782 81726806 -42349366 + AT_rich Low_complexity Low_complexity 1 24 0 3 1208 983 274 39 40 chr9 81726809 81727247 -42348925 - Lx6 LINE L1 -30 7430 6960 3 1208 307 333 0 9 chr9 81727354 81727460 -42348712 - LTR86C LTR ERVL -33 588 484 3 1208 341 327 58 7 chr9 81728141 81728295 -42347877 - LTR86C LTR ERVL -459 162 1 3 1208 335 279 13 60 chr9 81729224 81729373 -42346799 + MamRep605 Unknown Unknown 47 188 -688 3 1208 1884 241 55 24 chr9 81729552 81730063 -42346109 - RLTR11A2 LTR ERVK 0 527 1 3 1208 933 269 130 41 chr9 81730643 81730981 -42345191 - ORR1D2 LTR MaLR 0 370 3 3 1208 299 258 33 22 chr9 81731128 81731219 -42344953 + MTEa LTR MaLR 288 379 0 3 1208 324 48 0 0 chr9 81732299 81732341 -42343831 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1208 465 234 0 0 chr9 81733479 81733590 -42342582 - Lx9 LINE L1 -7 7637 7527 3 1208 1276 210 88 0 chr9 81733610 81733938 -42342234 - Lx9 LINE L1 -168 7476 7120 3 1208 439 296 38 6 chr9 81734014 81734174 -42341998 - Lx9 LINE L1 -482 7162 6998 3 1208 258 403 16 0 chr9 81734214 81734338 -42341834 - Lx8 LINE L1 -179 7294 7169 3 1208 819 248 58 29 chr9 81734364 81734605 -42341567 - L1_Mur3 LINE L1 -1892 3988 3741 3 1208 657 234 101 26 chr9 81734612 81734644 -42341528 - B3 SINE B2 -5 211 183 3 1208 360 43 0 0 chr9 81734644 81734690 -42341482 + (TATG)n Simple_repeat Simple_repeat 1 46 0 3 1208 657 234 101 26 chr9 81734690 81734846 -42341326 - B3 SINE B2 -34 182 11 3 1208 809 276 10 23 chr9 81734855 81735157 -42341015 - L1M2 LINE L1 -2355 3788 3469 3 1208 485 289 75 36 chr9 81735307 81735669 -42340503 + L1_Mur3 LINE L1 3113 3488 -2392 3 1208 352 295 22 128 chr9 81736890 81737069 -42339103 - ID_B1 SINE B4 0 224 65 3 1208 677 246 8 0 chr9 81737070 81737196 -42338976 - RSINE1 SINE B4 -35 130 4 3 1208 804 287 10 5 chr9 81737242 81737445 -42338727 + B3 SINE B2 1 204 -12 3 1208 2951 224 8 15 chr9 81737609 81738173 -42337999 - Lx6 LINE L1 -716 6744 6185 3 1208 441 0 0 0 chr9 81738173 81738222 -42337950 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1208 2951 224 8 15 chr9 81738222 81738246 -42337926 - Lx6 LINE L1 -1276 6184 6160 3 1208 392 154 15 0 chr9 81738228 81738293 -42337879 - Lx9 LINE L1 -216 7428 7363 3 1208 315 0 0 0 chr9 81738640 81738675 -42337497 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1208 4533 148 25 25 chr9 81738950 81739750 -42336422 + L1_Mm LINE L1 4754 5553 -330 3 1208 560 298 113 0 chr9 81740095 81740263 -42335909 - B3A SINE B2 -2 196 10 3 1208 34 42 0 0 chr9 81741424 81741472 -42334700 + AT_rich Low_complexity Low_complexity 1 48 0 3 1208 544 296 37 0 chr9 81741557 81741692 -42334480 - RSINE1 SINE B4 -22 143 4 3 1208 331 325 107 42 chr9 81742456 81742671 -42333501 - MIR SINE MIR -32 230 2 3 1208 1126 157 15 58 chr9 81743124 81743450 -42332722 + Lx3C LINE L1 6323 6594 -406 3 1208 323 139 28 0 chr9 81743451 81743523 -42332649 + Lx3C LINE L1 6896 6969 -7 3 1208 22 35 0 0 chr9 81744083 81744112 -42332060 + AT_rich Low_complexity Low_complexity 1 29 0 3 1208 1186 272 68 15 chr9 81744729 81745069 -42331103 - MTE2b LTR MaLR -21 358 1 3 1208 5741 186 31 52 chr9 81745078 81746604 -42329568 + Lx2B LINE L1 5508 7000 0 3 1208 570 29 0 0 chr9 81747855 81747923 -42328249 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1208 233 269 64 0 chr9 81748332 81748410 -42327762 - Zaphod DNA Tip100 -3883 148 66 3 1208 180 0 0 0 chr9 81748752 81748772 -42327400 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1208 21 36 0 0 chr9 81749130 81749158 -42327014 + AT_rich Low_complexity Low_complexity 1 28 0 3 1208 262 308 198 14 chr9 81749454 81749671 -42326501 - MIR SINE MIR 0 262 6 3 1208 441 0 0 0 chr9 81749909 81749958 -42326214 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1208 737 294 39 39 chr9 81749993 81750251 -42325921 + RMER15 LTR ERVL 27 284 -291 3 1208 1219 220 199 6 chr9 81750306 81750332 -42325840 + RMER15 LTR ERVL 184 211 -364 3 1208 1004 193 8 71 chr9 81750332 81750572 -42325600 - URR1A DNA MER1_type 0 226 2 3 1208 1219 220 199 6 chr9 81750572 81750861 -42325311 + RMER15 LTR ERVL 212 560 -15 3 1208 349 282 203 103 chr9 81750880 81751200 -42324972 + RMER15-int LTR ERVL 9 360 -4639 3 1208 548 29 0 0 chr9 81751511 81751580 -42324592 + B1_Mus2 SINE Alu 76 144 -3 3 1208 582 15 0 0 chr9 81751580 81751647 -42324525 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 3 1208 935 288 44 7 chr9 81752006 81752279 -42323893 + RMER15-int LTR ERVL 2089 2371 -2628 3 1208 510 264 74 111 chr9 81752445 81752769 -42323403 - RLTR9A LTR ERVK 0 368 57 3 1208 842 330 72 13 chr9 81752794 81753181 -42322991 + Lx8 LINE L1 6319 6728 -745 3 1208 267 329 13 0 chr9 81753289 81753368 -42322804 + RMER15-int LTR ERVL 4877 4956 -43 3 1208 191 194 167 61 chr9 81753810 81753876 -42322296 + MIRc SINE MIR 83 155 -113 3 1208 1822 186 16 46 chr9 81753971 81754342 -42321830 + MTC LTR MaLR 3 362 -59 3 1208 1241 82 54 0 chr9 81754343 81754527 -42321645 + B2_Mm2 SINE B2 2 195 0 3 1208 209 57 0 28 chr9 81754531 81754567 -42321605 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1208 279 119 0 0 chr9 81754601 81754643 -42321529 + MTC LTR MaLR 368 409 -10 3 1208 185 309 36 0 chr9 81754674 81754729 -42321443 + L2c LINE L2 3268 3324 -63 3 1208 26 0 0 0 chr9 81754779 81754805 -42321367 + AT_rich Low_complexity Low_complexity 1 26 0 3 1208 1672 26 0 0 chr9 81754844 81755036 -42321136 - B2_Mm1t SINE B2 0 193 2 3 1208 374 292 0 11 chr9 81755082 81755172 -42321000 - RSINE1 SINE B4 -64 101 13 3 1208 381 276 8 72 chr9 81758196 81758321 -42317851 - PB1D7 SINE Alu 0 120 4 3 1208 23 0 0 0 chr9 81758629 81758652 -42317520 + AT_rich Low_complexity Low_complexity 1 23 0 3 1208 588 275 185 15 chr9 81759376 81759809 -42316363 - L1MA5A LINE L1 -365 5935 5430 3 1208 480 230 0 170 chr9 81759835 81759960 -42316212 - Lx9 LINE L1 -9 7635 7526 3 1208 525 32 0 0 chr9 81759960 81760023 -42316149 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 1208 480 230 0 170 chr9 81760023 81760138 -42316034 - Lx9 LINE L1 -119 7525 7436 3 1208 359 319 87 34 chr9 81760160 81760540 -42315632 - L1_Mur3 LINE L1 -502 5378 4979 3 1208 1477 158 147 13 chr9 81760541 81760848 -42315324 - ORR1B2 LTR MaLR 0 367 20 3 1208 486 264 266 6 chr9 81760894 81761052 -42315120 + Lx9 LINE L1 7271 7476 -168 3 1208 615 117 0 0 chr9 81761052 81761146 -42315026 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 1208 486 175 148 33 chr9 81761146 81761301 -42314871 + Lx9 LINE L1 7477 7643 -1 3 1208 247 299 11 53 chr9 81761318 81761412 -42314760 - ID4 SINE ID -55 97 4 3 1208 240 35 0 0 chr9 81762791 81762820 -42313352 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1208 357 354 71 62 chr9 81762887 81763098 -42313074 - MER58A DNA MER1_type 0 224 12 3 1208 348 24 0 0 chr9 81764084 81764125 -42312047 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1208 306 301 135 0 chr9 81764129 81764262 -42311910 - RSINE1 SINE B4 -11 154 4 3 1208 216 211 39 13 chr9 81766067 81766144 -42310028 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 1208 232 291 12 25 chr9 81767550 81767631 -42308541 - ID4_ SINE ID -3 80 1 3 1208 271 300 10 29 chr9 81767967 81768065 -42308107 + B3A SINE B2 2 90 -105 3 1208 1341 87 0 21 chr9 81768106 81768295 -42307877 - B2_Mm2 SINE B2 -9 186 2 3 1208 326 319 52 47 chr9 81768386 81768577 -42307595 - MLT1C LTR MaLR -112 355 164 3 1208 660 283 11 5 chr9 81768578 81768763 -42307409 - B3A SINE B2 -9 189 4 3 1208 191 188 0 20 chr9 81769230 81769279 -42306893 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 3 1208 623 279 74 23 chr9 81769305 81769362 -42306810 - B4A SINE B4 -7 285 218 3 1208 197 108 0 26 chr9 81769362 81769400 -42306772 + (TATG)n Simple_repeat Simple_repeat 2 38 0 3 1208 623 279 74 23 chr9 81769400 81769518 -42306654 - B4A SINE B4 -75 217 101 3 1208 307 301 69 88 chr9 81769568 81769728 -42306444 + RSINE1 SINE B4 9 165 0 3 1208 297 351 35 26 chr9 81770087 81770201 -42305971 - MIRb SINE MIR -31 237 123 3 1208 683 308 62 16 chr9 81770328 81770572 -42305600 - L3 LINE CR1 -17 4472 4218 3 1208 272 299 152 19 chr9 81770710 81770921 -42305251 + L2a LINE L2 3038 3276 -150 3 1208 201 162 0 0 chr9 81771131 81771168 -42305004 + (TAA)n Simple_repeat Simple_repeat 1 37 0 3 1208 28 0 0 0 chr9 81771169 81771197 -42304975 + AT_rich Low_complexity Low_complexity 1 28 0 3 1208 332 311 14 50 chr9 81771197 81771336 -42304836 - RSINE1 SINE B4 -31 134 1 3 1208 1292 161 9 27 chr9 81771826 81772049 -42304123 - URR1B DNA MER1_type 0 225 7 3 1208 334 205 36 68 chr9 81772129 81772217 -42303955 - RLTR20B3 LTR ERVK -42 535 448 4 1208 1481 204 122 49 chr9 81772332 81772740 -42303432 - RLTR20B3 LTR ERVK -139 438 1 4 1208 212 245 0 0 chr9 81773674 81773727 -42302445 + A-rich Low_complexity Low_complexity 2 54 0 4 1208 216 0 0 0 chr9 81773814 81773838 -42302334 + (CTG)n Simple_repeat Simple_repeat 3 26 0 4 1208 391 271 114 0 chr9 81773884 81774024 -42302148 - RSINE1 SINE B4 -8 157 2 4 1208 387 0 0 0 chr9 81774076 81774119 -42302053 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1208 278 289 79 0 chr9 81775143 81775219 -42300953 + B1F SINE Alu 34 115 -34 4 1208 29 28 0 0 chr9 81775424 81775460 -42300712 + AT_rich Low_complexity Low_complexity 1 36 0 4 1208 369 313 40 57 chr9 81775550 81775797 -42300375 - L1M4 LINE L1 -807 5339 5097 4 1208 4652 161 29 15 chr9 81777817 81779047 -42297125 - Lx5 LINE L1 -449 6601 5341 4 1208 415 340 94 76 chr9 81780239 81780462 -42295710 - MER21B LTR ERV1 -636 227 1 4 1208 468 0 0 0 chr9 81780533 81780585 -42295587 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1208 288 91 0 0 chr9 81780585 81780628 -42295544 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1208 414 0 0 0 chr9 81781095 81781141 -42295031 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1208 477 351 84 58 chr9 81781827 81782102 -42294070 + B4A SINE B4 3 284 -8 4 1208 468 100 0 0 chr9 81782170 81782250 -42293922 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1208 416 305 51 32 chr9 81782537 81782693 -42293479 - MER2 DNA MER2_type -2 343 185 4 1208 1101 203 61 6 chr9 81783120 81783447 -42292725 - Lx9 LINE L1 -3 7641 7297 4 1208 671 218 30 0 chr9 81783444 81783577 -42292595 + Lx9 LINE L1 7168 7304 -340 4 1208 235 343 0 15 chr9 81784231 81784299 -42291873 - ID4_ SINE ID -5 78 12 4 1208 561 105 0 0 chr9 81786055 81786141 -42290031 + (CA)n Simple_repeat Simple_repeat 2 87 0 4 1208 41 58 0 0 chr9 81786446 81786515 -42289657 + AT_rich Low_complexity Low_complexity 1 69 0 4 1208 674 122 35 21 chr9 81786535 81786677 -42289495 + CT-rich Low_complexity Low_complexity 2 145 0 4 1208 567 0 0 0 chr9 81786679 81786742 -42289430 + (TTTTC)n Simple_repeat Simple_repeat 4 66 0 4 1208 2838 106 30 7 chr9 81786743 81787171 -42289001 - Lx3A LINE L1 -17 6964 6527 4 1208 4980 85 8 7 chr9 81787171 81788113 -42288059 - Lx3A LINE L1 -642 6339 5402 4 18 16861 85 20 2 chr9 81788127 81790719 -42285453 - Lx3A LINE L1 -1244 4642 2006 4 1209 6683 102 121 4 chr9 81790721 81791934 -42284238 - Lx3A LINE L1 -4509 1377 3 4 1209 624 14 0 0 chr9 81791945 81792018 -42284154 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1209 4368 38 0 0 chr9 81792018 81792566 -42283606 - L1Md_F2 LINE L1 -21 6561 6014 4 1209 246 155 123 27 chr9 81792568 81792714 -42283458 + (TTTAA)n Simple_repeat Simple_repeat 4 163 0 4 1209 23 0 0 0 chr9 81793345 81793368 -42282804 + AT_rich Low_complexity Low_complexity 1 23 0 4 1209 200 300 0 16 chr9 81793720 81793781 -42282391 + GA-rich Low_complexity Low_complexity 4 63 0 4 1209 194 98 49 0 chr9 81794856 81794897 -42281275 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 4 1209 180 0 0 0 chr9 81794939 81794959 -42281213 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1209 236 234 31 38 chr9 81796905 81797065 -42279107 + (TTA)n Simple_repeat Simple_repeat 1 159 0 4 1209 247 177 24 37 chr9 81796925 81797007 -42279165 + (TTATA)n Simple_repeat Simple_repeat 2 82 0 4 1209 22 0 0 0 chr9 81797303 81797325 -42278847 + AT_rich Low_complexity Low_complexity 1 22 0 4 1209 243 0 0 0 chr9 81798071 81798098 -42278074 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1209 484 268 76 14 chr9 81798120 81798264 -42277908 + MER5A DNA MER1_type 37 189 0 4 1209 27 49 0 0 chr9 81799554 81799595 -42276577 + AT_rich Low_complexity Low_complexity 1 41 0 4 1209 2665 28 46 3 chr9 81800054 81800377 -42275795 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1209 11269 21 1 4 chr9 81800377 81801731 -42274441 - IAPEz-int LTR ERVK 0 6481 5132 4 1209 36418 26 20 8 chr9 81801730 81806213 -42269959 - IAPEz-int LTR ERVK -1936 4545 8 4 1209 2665 28 46 3 chr9 81806213 81806536 -42269636 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1209 1495 243 81 31 chr9 81806539 81806997 -42269175 - RLTR11A2 LTR ERVK -44 483 3 4 1209 669 25 0 0 chr9 81807048 81807127 -42269045 + (GGGAGA)n Simple_repeat Simple_repeat 4 82 0 4 1209 181 128 0 41 chr9 81807137 81807186 -42268986 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1209 374 304 35 12 chr9 81807894 81808064 -42268108 + L1MA7 LINE L1 5986 6159 -132 4 1209 329 253 88 0 chr9 81808327 81808418 -42267754 - Lx8 LINE L1 -288 7185 7087 4 1209 1914 273 121 36 chr9 81808418 81809177 -42266995 + MTD-int LTR MaLR 431 1254 -4 4 1209 1340 258 102 16 chr9 81809181 81809563 -42266609 + MTD LTR MaLR 1 415 -4 4 1209 371 325 70 0 chr9 81809714 81809828 -42266344 - B1F2 SINE Alu -27 122 1 4 1209 24 32 0 0 chr9 81810246 81810277 -42265895 + AT_rich Low_complexity Low_complexity 1 31 0 4 1209 325 60 0 0 chr9 81810344 81810394 -42265778 - Lx2 LINE L1 -2 6995 6946 4 1209 342 0 0 0 chr9 81810722 81810760 -42265412 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 1209 318 293 87 36 chr9 81812191 81812329 -42263843 - MER5B DNA MER1_type -24 154 10 4 1209 270 365 84 95 chr9 81813155 81813524 -42262648 - L2b LINE L2 -21 3354 2990 4 1209 372 195 101 8 chr9 81814851 81814970 -42261202 + Lx9 LINE L1 7384 7513 -131 4 1209 285 205 39 23 chr9 81814988 81815118 -42261054 + (TA)n Simple_repeat Simple_repeat 2 133 0 4 1209 432 37 0 0 chr9 81815420 81815474 -42260698 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1209 578 287 115 24 chr9 81816127 81816380 -42259792 + MLT2B4 LTR ERVL 94 369 -187 4 1209 345 24 0 0 chr9 81816443 81816485 -42259687 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1209 2673 153 22 0 chr9 81816974 81817430 -42258742 - Lx2B LINE L1 -15 6985 6520 4 1209 685 296 93 49 chr9 81817855 81818013 -42258159 - L1M2 LINE L1 -961 5182 5034 4 1209 1132 89 0 0 chr9 81818013 81818159 -42258013 - B1_Mus2 SINE Alu 0 147 2 4 1209 685 296 93 49 chr9 81818159 81818497 -42257675 - L1M2 LINE L1 -1110 5033 4674 4 1209 564 200 271 11 chr9 81818497 81818674 -42257498 - URR1B DNA MER1_type -1 224 2 4 1209 685 296 93 49 chr9 81818674 81818832 -42257340 - L1M2 LINE L1 -1470 4673 4498 4 1209 905 194 22 0 chr9 81818840 81819020 -42257152 - URR1A DNA MER1_type -3 223 40 4 1209 1461 246 29 47 chr9 81819267 81819323 -42256849 - MT2A LTR ERVL -6 527 472 4 1209 372 59 0 0 chr9 81819323 81819374 -42256798 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1209 1461 246 29 47 chr9 81819374 81819761 -42256411 - MT2A LTR ERVL -62 471 92 4 1209 591 175 39 23 chr9 81819755 81819884 -42256288 - MT2A LTR ERVL -401 132 2 4 1209 464 228 106 136 chr9 81820224 81820422 -42255750 + B3A SINE B2 2 193 -2 4 1209 595 168 39 6 chr9 81823379 81823535 -42252637 + CT-rich Low_complexity Low_complexity 4 164 0 4 1209 714 95 0 0 chr9 81823657 81823762 -42252410 - B1_Mus2 SINE Alu -1 146 42 4 1209 387 0 0 0 chr9 81823885 81823928 -42252244 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1209 36222 30 1 0 chr9 81824003 81830850 -42245322 - L1Md_T LINE L1 0 6585 1 4 1209 383 280 86 21 chr9 81831166 81831352 -42244820 - L1M2 LINE L1 -2650 3493 3296 4 1209 611 322 59 18 chr9 81831530 81832023 -42244149 + L1M3 LINE L1 2537 3049 -3091 4 1209 202 314 176 8 chr9 81832096 81832215 -42243957 + MIR SINE MIR 64 202 -60 4 1209 392 300 74 10 chr9 81832359 81832561 -42243611 - B3 SINE B2 0 216 2 4 1209 423 0 0 0 chr9 81832978 81833025 -42243147 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1209 1044 238 163 17 chr9 81833515 81833687 -42242485 - ORR1B2 LTR MaLR 0 367 196 4 1209 651 48 0 0 chr9 81833687 81833770 -42242402 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 1209 1044 251 117 36 chr9 81833770 81833979 -42242193 - ORR1B2 LTR MaLR -172 206 1 4 1209 24 77 0 0 chr9 81834030 81834082 -42242090 + AT_rich Low_complexity Low_complexity 1 52 0 4 1209 200 342 46 20 chr9 81834291 81834443 -42241729 - MIRc SINE MIR -31 237 82 4 1209 305 280 30 67 chr9 81834977 81835111 -42241061 - MLT1D LTR MaLR -376 129 1 4 1209 256 321 87 40 chr9 81836152 81836499 -42239673 + HAL1 LINE L1 1102 1464 -1043 4 1209 845 294 31 8 chr9 81836704 81836961 -42239211 + Lx6 LINE L1 7157 7419 -41 4 1209 1697 78 0 28 chr9 81837391 81837641 -42238531 - MT2B2 LTR ERVL -3 581 339 4 1209 189 0 0 0 chr9 81838144 81838165 -42238007 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 1209 282 300 73 91 chr9 81838554 81838719 -42237453 + RSINE1 SINE B4 4 165 0 4 1209 206 212 20 20 chr9 81838728 81838829 -42237343 + (CA)n Simple_repeat Simple_repeat 2 102 0 4 1209 288 313 0 17 chr9 81838965 81839019 -42237153 + A-rich Low_complexity Low_complexity 1 54 0 4 1209 249 246 130 0 chr9 81839019 81839088 -42237084 + ID4 SINE ID 3 80 -3 4 1209 288 313 0 17 chr9 81839088 81839150 -42237022 + A-rich Low_complexity Low_complexity 55 115 0 4 1209 499 290 12 18 chr9 81839487 81839652 -42236520 + MER5A1 DNA MER1_type 1 164 -2 4 1209 243 88 0 0 chr9 81840140 81840174 -42235998 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1209 794 280 23 43 chr9 81840357 81840656 -42235516 + Lx9 LINE L1 7132 7424 -220 4 1209 405 188 0 0 chr9 81840708 81840793 -42235379 + (CA)n Simple_repeat Simple_repeat 1 85 0 4 1209 1230 81 75 0 chr9 81842443 81842617 -42233555 - B2_Mm2 SINE B2 -7 188 2 4 1209 714 284 34 15 chr9 81843000 81843204 -42232968 - Lx7 LINE L1 -1042 6654 6447 4 1209 251 338 101 22 chr9 81844481 81844620 -42231552 - B4A SINE B4 -116 176 27 4 1209 3393 42 42 0 chr9 81845603 81846027 -42230145 + L1Md_F3 LINE L1 6126 6567 -17 4 1209 21 0 0 0 chr9 81846027 81846048 -42230124 + AT_rich Low_complexity Low_complexity 1 21 0 4 1209 223 390 75 12 chr9 81846153 81846314 -42229858 + MER5B DNA MER1_type 2 172 -6 4 1209 266 290 11 0 chr9 81846451 81846544 -42229628 + Ricksha_c DNA MuDR 9 102 -1946 4 1209 240 109 14 72 chr9 81846607 81846676 -42229496 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1209 391 246 101 47 chr9 81846754 81846903 -42229269 + Ricksha_c DNA MuDR 389 545 -1503 4 1209 645 250 42 61 chr9 81847008 81847272 -42228900 + Ricksha_c DNA MuDR 1642 1900 -148 4 1209 460 274 0 7 chr9 81847839 81847975 -42228197 - Lx6 LINE L1 -26 7434 7300 4 1209 1442 68 117 9 chr9 81848569 81848791 -42227381 + L1_Mus3 LINE L1 6393 6638 0 4 1209 21 71 0 0 chr9 81848842 81848884 -42227288 + AT_rich Low_complexity Low_complexity 1 42 0 4 1209 534 341 117 25 chr9 81850126 81850501 -42225671 - MTE-int LTR MaLR 0 1370 1041 5 1209 334 313 94 29 chr9 81850550 81850721 -42225451 - LTR16A LTR ERVL -262 189 8 5 1209 263 218 91 86 chr9 81852763 81852949 -42223223 - L1M3 LINE L1 -856 5441 5255 5 1209 389 243 88 21 chr9 81853004 81853197 -42222975 - L1M3 LINE L1 -961 5179 4974 5 1209 8466 122 25 6 chr9 81853258 81854938 -42221234 - Lx3C LINE L1 0 6976 5270 5 1209 3264 107 10 77 chr9 81854957 81855554 -42220618 + L1_Mur1 LINE L1 4750 5306 -580 5 1209 301 337 69 46 chr9 81855645 81855819 -42220353 + MTE2a LTR MaLR 1 178 -201 5 1209 345 24 0 0 chr9 81855830 81855872 -42220300 + (CAAG)n Simple_repeat Simple_repeat 1 42 0 5 1209 902 280 175 0 chr9 81855876 81856231 -42219941 - MTD LTR MaLR -2 417 1 5 1209 236 236 0 0 chr9 81856236 81856291 -42219881 + Lx7 LINE L1 7253 7307 -389 5 1209 511 231 78 58 chr9 81856388 81856553 -42219619 + MTE2a LTR MaLR 167 373 -48 5 1209 1889 189 78 5 chr9 81856548 81856931 -42219241 - MTC LTR MaLR -6 415 5 5 1209 255 93 0 0 chr9 81857105 81857148 -42219024 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5 1209 506 274 26 0 chr9 81857186 81857299 -42218873 - RSINE1 SINE B4 -38 127 12 5 1209 436 245 33 26 chr9 81857362 81857513 -42218659 - L1M3 LINE L1 -1473 4667 4516 5 1209 3394 90 24 20 chr9 81857520 81858017 -42218155 + L1VL4 LINE L1 272 770 -5532 5 1209 4242 142 13 3 chr9 81858012 81858716 -42217456 + L1_Mm LINE L1 4228 4938 -945 5 1209 2766 172 0 0 chr9 81858717 81859188 -42216984 + Lx LINE L1 6176 6646 -8 5 1209 498 17 0 0 chr9 81859205 81859264 -42216908 + (CAGGA)n Simple_repeat Simple_repeat 2 60 0 5 1209 522 0 0 0 chr9 81859362 81859420 -42216752 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 5 1209 1117 251 122 15 chr9 81859445 81859612 -42216560 - Lx6 LINE L1 -563 6897 6731 5 1209 414 0 0 0 chr9 81859612 81859658 -42216514 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1209 1117 254 106 16 chr9 81859658 81859921 -42216251 - Lx6 LINE L1 -730 6730 6236 5 1209 212 295 25 37 chr9 81860815 81860896 -42215276 - L4 LINE RTE -1048 981 902 5 1209 508 242 86 0 chr9 81861058 81861186 -42214986 + B1_Mm SINE Alu 5 143 -4 5 1209 319 222 19 12 chr9 81861191 81861351 -42214821 + (TA)n Simple_repeat Simple_repeat 1 161 0 5 1209 25 31 0 0 chr9 81861524 81861556 -42214616 + AT_rich Low_complexity Low_complexity 1 32 0 5 1209 628 325 39 4 chr9 81861938 81862219 -42213953 + L1M2 LINE L1 5448 5738 -562 5 1209 797 253 66 136 chr9 81862592 81863049 -42213123 - RLTR23 LTR ERV1 0 430 6 5 1209 24 53 0 0 chr9 81863110 81863148 -42213024 + AT_rich Low_complexity Low_complexity 1 38 0 5 1209 909 257 14 9 chr9 81864764 81864976 -42211196 - B3 SINE B2 -3 213 1 5 1209 221 254 18 0 chr9 81865194 81865249 -42210923 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1209 318 271 137 84 chr9 81866083 81866345 -42209827 - L1MEd LINE L1 -5005 1114 839 5 1209 242 247 0 27 chr9 81866793 81866868 -42209304 + GA-rich Low_complexity Low_complexity 2 74 0 5 1209 776 21 21 0 chr9 81866868 81866965 -42209207 + (GGAAA)n Simple_repeat Simple_repeat 2 100 0 5 1209 866 274 20 0 chr9 81867012 81867216 -42208956 + B3 SINE B2 9 216 0 5 1209 242 281 163 16 chr9 81867178 81867301 -42208871 - Charlie12 DNA MER1_type -2730 143 3 5 1209 501 338 0 52 chr9 81867378 81867531 -42208641 + B3A SINE B2 1 145 -53 5 1209 387 0 0 0 chr9 81867551 81867594 -42208578 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1209 451 31 15 15 chr9 81867594 81867660 -42208512 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1209 225 222 39 77 chr9 81867867 81867945 -42208227 + LTR37B LTR ERV1 193 267 -201 5 1209 606 267 0 122 chr9 81867970 81868183 -42207989 + B3A SINE B2 6 192 -6 5 1209 25 0 0 0 chr9 81868698 81868723 -42207449 + AT_rich Low_complexity Low_complexity 1 25 0 5 1209 3253 153 50 70 chr9 81868729 81869433 -42206739 - RMER6C LTR ERVK 0 690 1 5 1209 261 344 58 26 chr9 81869653 81869808 -42206364 - ERVL-E-int LTR ERVL -2877 2790 2631 5 1209 200 378 59 0 chr9 81870992 81871111 -42205061 - MIR SINE MIR -25 237 112 5 1209 851 96 42 0 chr9 81872059 81872226 -42203946 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 5 1209 21 36 0 0 chr9 81872442 81872470 -42203702 + AT_rich Low_complexity Low_complexity 1 28 0 5 1209 849 71 0 0 chr9 81873073 81873186 -42202986 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 5 1209 273 337 28 44 chr9 81873357 81873537 -42202635 + MER5B DNA MER1_type 2 178 0 5 1209 435 19 0 0 chr9 81874071 81874123 -42202049 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1209 583 222 115 18 chr9 81874450 81874615 -42201557 + B3 SINE B2 1 181 -35 5 1209 311 275 14 0 chr9 81875855 81875924 -42200248 + B3 SINE B2 1 70 -146 5 1209 914 157 216 0 chr9 81876067 81876252 -42199920 + URR1A DNA MER1_type 2 226 0 5 1209 371 209 7 86 chr9 81876344 81876496 -42199676 - Lx9 LINE L1 -3 7641 7502 5 1209 1042 79 50 0 chr9 81876738 81876878 -42199294 + B1_Mus1 SINE Alu 1 147 -1 5 1209 859 249 139 12 chr9 81877163 81877415 -42198757 + ORR1D2 LTR MaLR 1 284 -86 5 1209 192 111 0 0 chr9 81878603 81878639 -42197533 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1209 21 0 0 0 chr9 81878751 81878772 -42197400 + AT_rich Low_complexity Low_complexity 1 21 0 5 1209 646 252 262 21 chr9 81879097 81879433 -42196739 + MTD LTR MaLR 3 419 0 5 1209 485 307 29 2 chr9 81879811 81880042 -42196130 + Lx8 LINE L1 5549 5785 -506 5 1209 471 286 74 35 chr9 81880042 81880245 -42195927 + B3 SINE B2 1 211 -5 5 1209 405 0 0 0 chr9 81880756 81880801 -42195371 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1209 729 284 88 24 chr9 81881040 81881577 -42194595 - L1M3 LINE L1 -1483 4657 4087 5 1209 4014 92 30 21 chr9 81881631 81882256 -42193916 - MusHAL1 LINE L1 -626 2086 1456 5 1209 3501 25 136 0 chr9 81882513 81882947 -42193225 - MT2_Mm LTR ERVL 0 493 1 5 1209 829 248 62 29 chr9 81883240 81883548 -42192624 - L1_Mur3 LINE L1 -1813 4067 3750 5 1209 236 247 85 12 chr9 81883586 81883668 -42192504 - Lx9 LINE L1 -24 7620 7533 5 1209 256 230 11 0 chr9 81883677 81883764 -42192408 - L1_Mur3 LINE L1 -2138 3742 3655 5 1209 234 206 0 0 chr9 81883790 81883853 -42192319 + CT-rich Low_complexity Low_complexity 2 64 0 5 1209 237 139 0 0 chr9 81884319 81884362 -42191810 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1209 4110 146 82 26 chr9 81884534 81884621 -42191551 - L1_Mur2 LINE L1 -1260 4617 4522 5 1209 1323 35 6 0 chr9 81884621 81884791 -42191381 - L1Md_F2 LINE L1 0 6582 6412 5 1209 4110 146 82 26 chr9 81884791 81885510 -42190662 - L1_Mur2 LINE L1 -1356 4521 3766 5 1209 334 256 66 11 chr9 81887769 81887860 -42188312 + PB1D7 SINE Alu 16 111 -9 5 1209 731 277 0 5 chr9 81888587 81888772 -42187400 + Lx8 LINE L1 6229 6412 -1061 5 1209 797 313 18 11 chr9 81888791 81889072 -42187100 - Lx8 LINE L1 -965 6508 6226 5 1209 21 0 0 0 chr9 81890289 81890310 -42185862 + AT_rich Low_complexity Low_complexity 1 21 0 5 1209 845 323 38 23 chr9 81891059 81891404 -42184768 + MLT1A0 LTR MaLR 14 363 -2 5 1209 466 328 25 65 chr9 81891749 81891994 -42184178 + B4A SINE B4 42 276 -16 5 1209 396 0 0 0 chr9 81892007 81892051 -42184121 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1209 387 0 0 0 chr9 81892051 81892093 -42184079 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1209 605 288 108 48 chr9 81892217 81892549 -42183623 - Charlie1 DNA MER1_type -545 2236 1885 5 1209 357 298 40 0 chr9 81892603 81892727 -42183445 - Charlie1 DNA MER1_type -1056 1725 1597 5 1209 27 0 0 0 chr9 81892748 81892775 -42183397 + AT_rich Low_complexity Low_complexity 1 27 0 5 1209 288 284 204 16 chr9 81892775 81892961 -42183211 - Lx8 LINE L1 -5 7468 7248 5 1209 597 243 99 0 chr9 81893663 81893815 -42182357 - MTEb LTR MaLR -4 415 249 5 1209 516 151 0 58 chr9 81893917 81894037 -42182135 - Lx LINE L1 -5 6649 6537 5 1209 2578 100 84 3 chr9 81894036 81894428 -42181744 - Lx LINE L1 -239 6415 5992 5 1209 647 238 11 7 chr9 81894435 81894675 -42181497 - MTEb LTR MaLR -97 282 1 5 1209 318 316 67 35 chr9 81894824 81895136 -42181036 + Lx7 LINE L1 6918 7233 -240 5 1209 3851 95 0 5 chr9 81895206 81895767 -42180405 - L1_Mur1 LINE L1 -1030 4856 4299 5 1209 2096 195 27 10 chr9 81896393 81896807 -42179365 + MTC LTR MaLR 1 421 0 5 1209 3323 11 37 0 chr9 81898587 81898969 -42177203 + MTA_Mm LTR MaLR 1 396 0 5 1209 207 0 0 0 chr9 81900228 81900251 -42175921 + (CTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1209 738 286 19 23 chr9 81900252 81900348 -42175824 - ID_B1 SINE B4 -6 218 128 5 1209 4095 36 0 0 chr9 81900348 81900823 -42175349 - MT2C_Mm LTR ERVL 0 475 1 5 1209 738 286 19 23 chr9 81900823 81900941 -42175231 - ID_B1 SINE B4 -97 127 6 5 1209 283 241 38 0 chr9 81901533 81901612 -42174560 - B1_Mur1 SINE Alu 0 149 68 5 1209 1723 160 6 44 chr9 81902942 81903263 -42172909 - Lx4A LINE L1 -558 6500 6192 5 1209 4144 123 51 12 chr9 81903259 81903981 -42172191 - L1_Mur2 LINE L1 -2914 2963 2214 5 1209 547 148 43 0 chr9 81903979 81904094 -42172078 - L1_Mur2 LINE L1 -6413 673 554 5 1209 23 54 0 0 chr9 81905023 81905060 -42171112 + AT_rich Low_complexity Low_complexity 1 37 0 5 1209 237 83 0 0 chr9 81905256 81905292 -42170880 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1209 513 224 0 0 chr9 81905326 81905451 -42170721 + (TA)n Simple_repeat Simple_repeat 1 125 0 5 1209 2838 236 59 13 chr9 81906408 81906999 -42169173 - Lx2B LINE L1 -5 6995 6368 5 1209 414 0 0 0 chr9 81906999 81907045 -42169127 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 1209 2838 236 59 13 chr9 81907045 81907162 -42169010 - Lx2B LINE L1 -633 6367 6254 5 1209 2876 186 34 15 chr9 81907162 81907832 -42168340 + Lx2B LINE L1 5489 6167 -833 5 1209 1541 215 53 37 chr9 81907818 81908314 -42167858 + L1_Mur3 LINE L1 1345 1839 -4041 5 1209 333 223 0 11 chr9 81908314 81908409 -42167763 + Lx6 LINE L1 7354 7447 -13 5 1209 666 0 0 0 chr9 81909191 81909265 -42166907 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1209 806 203 149 26 chr9 81909553 81909681 -42166491 - Lx9 LINE L1 -1 7643 7499 5 1209 462 36 0 0 chr9 81909681 81909737 -42166435 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1209 806 203 149 26 chr9 81909737 81909916 -42166256 - Lx9 LINE L1 -146 7498 7298 5 1209 189 94 0 0 chr9 81910244 81910276 -42165896 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1209 21 0 0 0 chr9 81911829 81911850 -42164322 + AT_rich Low_complexity Low_complexity 1 21 0 6 1209 198 195 18 70 chr9 81912082 81912253 -42163919 + CT-rich Low_complexity Low_complexity 2 163 0 6 1209 357 24 0 0 chr9 81912805 81912847 -42163325 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1209 222 208 0 0 chr9 81914840 81914888 -42161284 + T-rich Low_complexity Low_complexity 3 50 0 6 1209 333 0 0 0 chr9 81915342 81915379 -42160793 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1209 1074 199 75 4 chr9 81915482 81915709 -42160463 - Lx9 LINE L1 -270 7374 7132 6 1209 597 192 0 0 chr9 81915730 81915860 -42160312 + (TA)n Simple_repeat Simple_repeat 2 131 0 6 1209 407 340 45 4 chr9 81916426 81916671 -42159501 - L1M2 LINE L1 -4399 2450 2196 6 1209 23 54 0 0 chr9 81916910 81916947 -42159225 + AT_rich Low_complexity Low_complexity 1 37 0 6 1209 264 164 101 29 chr9 81918555 81918624 -42157548 + RLTR31_Mur LTR ERVK 480 553 0 6 1210 444 282 56 73 chr9 81920392 81920497 -42155675 + Lx9 LINE L1 7225 7329 -315 6 1210 1141 68 7 0 chr9 81920497 81920643 -42155529 + B1_Mus2 SINE Alu 1 147 0 6 1210 444 282 56 73 chr9 81920643 81920770 -42155402 + Lx9 LINE L1 7330 7453 -191 6 1210 467 57 29 0 chr9 81920773 81920843 -42155329 + (TATG)n Simple_repeat Simple_repeat 3 74 0 6 1210 503 194 44 53 chr9 81920976 81921090 -42155082 + RLTR14 LTR ERV1 216 328 -54 6 1210 534 303 65 78 chr9 81921746 81922040 -42154132 - B4 SINE B4 -2 290 1 6 1210 538 176 0 16 chr9 81922524 81922645 -42153527 + (TTA)n Simple_repeat Simple_repeat 1 119 0 6 1210 205 319 113 46 chr9 81922888 81923039 -42153133 - MIR SINE MIR -21 241 81 6 1210 3193 76 24 2 chr9 81923691 81924115 -42152057 + L1_Mus2 LINE L1 6134 6566 0 6 1210 1288 42 6 0 chr9 81926864 81927032 -42149140 + L1Md_A LINE L1 6414 6582 0 6 1210 783 259 65 98 chr9 81927957 81928357 -42147815 - MTE2a LTR MaLR -2 372 5 6 1210 261 146 0 0 chr9 81929055 81929103 -42147069 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1210 671 342 9 9 chr9 81929436 81929666 -42146506 - MT2A LTR ERVL -99 434 205 6 1210 273 29 0 0 chr9 81929666 81929700 -42146472 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 6 1210 236 287 147 11 chr9 81929720 81929815 -42146357 - MT2A LTR ERVL -425 108 1 6 1210 21 0 0 0 chr9 81930766 81930787 -42145385 + AT_rich Low_complexity Low_complexity 1 21 0 6 1210 21739 57 2 5 chr9 81931006 81934892 -42141280 + L1Md_Gf LINE L1 41 4011 -1875 6 1210 21 57 0 0 chr9 81935428 81935463 -42140709 + AT_rich Low_complexity Low_complexity 1 35 0 6 1210 1030 278 119 24 chr9 81935470 81935880 -42140292 - Lx9 LINE L1 -633 7011 6563 6 1210 1244 7 0 0 chr9 81935995 81936143 -42140029 + L1Md_T LINE L1 6435 6582 0 6 1210 204 401 60 8 chr9 81936384 81936517 -42139655 - L2 LINE L2 -559 2860 2721 6 1210 235 277 84 0 chr9 81936746 81936829 -42139343 - MTEa LTR MaLR -1 378 289 6 1210 180 111 0 0 chr9 81937019 81937046 -42139126 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6 1210 558 103 0 0 chr9 81937070 81937157 -42139015 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1210 336 213 13 13 chr9 81937337 81937413 -42138759 - ORR1E LTR MaLR -283 76 1 6 1210 195 129 0 0 chr9 81937422 81937453 -42138719 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 6 1210 3096 72 14 5 chr9 81937586 81938002 -42138170 + L1Md_F2 LINE L1 6163 6582 0 6 1210 214 371 122 16 chr9 81939270 81939459 -42136713 + L2 LINE L2 2683 2891 -528 6 1210 1236 91 0 0 chr9 81939612 81939788 -42136384 + (TTCTC)n Simple_repeat Simple_repeat 5 180 0 6 1210 266 287 0 34 chr9 81939818 81939937 -42136235 - Lx6 LINE L1 0 7460 7346 6 1210 8634 161 14 160 chr9 81940003 81940995 -42135177 + Lx LINE L1 3940 4874 -1009 6 1210 874 64 8 60 chr9 81940995 81941128 -42135044 + B1_Mus2 SINE Alu 22 147 0 6 1210 8634 161 14 160 chr9 81941128 81941206 -42134966 + Lx LINE L1 4875 4949 -934 6 1210 1253 128 22 27 chr9 81941206 81941430 -42134742 - Lx2 LINE L1 0 6997 6775 6 1210 8634 135 16 76 chr9 81941430 81943113 -42133059 + Lx LINE L1 4950 6471 -96 6 1210 21 0 0 0 chr9 81943183 81943204 -42132968 + AT_rich Low_complexity Low_complexity 1 21 0 6 1210 261 98 0 0 chr9 81943843 81943884 -42132288 + (CAT)n Simple_repeat Simple_repeat 2 42 0 6 1210 287 324 9 27 chr9 81943889 81944000 -42132172 - PB1D10 SINE Alu -8 109 1 6 1210 23 54 0 0 chr9 81944273 81944310 -42131862 + AT_rich Low_complexity Low_complexity 1 37 0 6 1210 198 233 83 0 chr9 81944587 81944647 -42131525 - MIRb SINE MIR -66 202 138 6 1210 423 288 78 87 chr9 81944980 81945315 -42130857 + RLTR15 LTR ERVK 10 341 -18 6 1210 462 224 129 129 chr9 81945495 81945736 -42130436 + ORR1E LTR MaLR 98 338 -21 6 1210 2260 147 93 72 chr9 81945738 81946213 -42129959 + ORR1B1-int LTR MaLR 1025 1509 0 6 1210 1305 205 31 87 chr9 81946220 81946541 -42129631 + ORR1B1 LTR MaLR 41 343 -51 6 1210 809 164 0 11 chr9 81946567 81946746 -42129426 + GA-rich Low_complexity Low_complexity 1 177 0 6 1210 435 38 0 0 chr9 81946747 81946800 -42129372 + (GAAA)n Simple_repeat Simple_repeat 1 53 0 6 1210 412 332 126 40 chr9 81947255 81947453 -42128719 - B3A SINE B2 -1 215 1 6 1210 501 17 0 0 chr9 81948034 81948092 -42128080 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1210 468 0 0 0 chr9 81948092 81948143 -42128029 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1210 3774 197 32 136 chr9 81948169 81949207 -42126965 - RMER21A LTR ERV1 -6 941 12 6 1210 597 14 0 0 chr9 81949211 81949281 -42126891 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 6 1210 198 103 0 0 chr9 81949783 81949812 -42126360 + (TTAGGG)n Simple_repeat Simple_repeat 3 31 0 6 1210 231 235 0 0 chr9 81950784 81950835 -42125337 + A-rich Low_complexity Low_complexity 1 51 0 6 1210 283 347 78 22 chr9 81951295 81951475 -42124697 - MIR SINE MIR -17 245 56 6 1210 1397 272 41 7 chr9 81951724 81952244 -42123928 - Lx7 LINE L1 -1644 6052 5515 6 1210 905 281 50 53 chr9 81952243 81952600 -42123572 + Lx7 LINE L1 7056 7411 -285 6 1210 314 294 17 94 chr9 81953327 81953507 -42122665 + L1MA5 LINE L1 5976 6141 -159 6 1210 245 343 123 19 chr9 81953720 81953770 -42122402 - L1MA4 LINE L1 -1654 5990 5929 6 1210 456 19 0 0 chr9 81953770 81953823 -42122349 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1210 815 327 111 31 chr9 81953823 81955038 -42121134 - L1MA4 LINE L1 -364 5936 4637 6 1210 622 298 85 35 chr9 81955048 81955658 -42120514 - L1MA4 LINE L1 -2995 2852 2229 6 1210 7537 94 14 6 chr9 81955658 81956748 -42119424 - Lx3_Mus LINE L1 0 7009 5911 6 1210 549 331 77 79 chr9 81956748 81957322 -42118850 - L1MA4 LINE L1 -3619 2228 1666 6 1210 2702 31 9 3 chr9 81957322 81957647 -42118525 - IAPLTR2b LTR ERVK 0 327 1 6 1210 549 331 77 79 chr9 81957647 81957759 -42118413 - L1MA4 LINE L1 -4182 1665 1557 6 1210 321 266 24 13 chr9 81958082 81958176 -42117996 - MTE2b LTR MaLR -227 152 59 6 1210 23 33 0 0 chr9 81958513 81958543 -42117629 + AT_rich Low_complexity Low_complexity 1 30 0 6 1210 877 119 18 39 chr9 81958949 81959152 -42117020 - ORR1A4 LTR MaLR -155 239 41 6 1210 389 212 0 0 chr9 81959255 81959354 -42116818 - Lx9 LINE L1 -4 7640 7542 6 1210 932 98 0 0 chr9 81960144 81960277 -42115895 + L1_Mus1 LINE L1 2777 2909 -2974 6 1210 938 59 0 0 chr9 81960287 81960406 -42115766 + B1_Mus1 SINE Alu 1 119 -29 6 1210 17455 106 6 3 chr9 81960414 81962999 -42113173 + L1_Mus1 LINE L1 2951 5543 -340 6 1210 6461 72 0 8 chr9 81962995 81963838 -42112334 + L1_Mus1 LINE L1 5732 6567 0 6 1210 316 358 96 35 chr9 81963941 81964170 -42112002 + MLT1C LTR MaLR 206 448 -19 6 1210 573 15 0 0 chr9 81964568 81964634 -42111538 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1210 283 365 0 9 chr9 81964892 81964997 -42111175 - Zaphod DNA Tip100 0 4031 3928 6 1210 225 0 0 0 chr9 81965478 81965503 -42110669 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1210 221 244 0 11 chr9 81965515 81965602 -42110570 + (TA)n Simple_repeat Simple_repeat 2 87 0 6 1210 239 307 92 27 chr9 81965860 81966044 -42110128 + Tigger15a DNA TcMar 186 381 -334 6 1210 23 0 0 0 chr9 81966122 81966145 -42110027 + AT_rich Low_complexity Low_complexity 1 23 0 6 1210 341 88 34 34 chr9 81966156 81966215 -42109957 + B1_Mur4 SINE Alu 2 60 -90 6 1210 274 0 0 159 chr9 81966216 81966354 -42109818 + (CAGAG)n Simple_repeat Simple_repeat 5 120 0 6 1210 749 75 0 0 chr9 81966357 81966463 -42109709 + B1_Mm SINE Alu 42 147 0 6 1210 324 0 0 0 chr9 81966588 81966624 -42109548 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1210 1332 132 0 17 chr9 81966902 81967133 -42109039 - Lx3_Mus LINE L1 0 7009 6783 6 1210 348 356 79 19 chr9 81968022 81968288 -42107884 + L1ME3B LINE L1 5256 5537 -703 6 1210 305 366 68 45 chr9 81968601 81968893 -42107279 + L1ME3B LINE L1 5856 6154 -86 6 1210 1225 234 100 45 chr9 81969086 81969534 -42106638 - L1_Rod LINE L1 -621 5226 4754 6 1210 853 273 116 8 chr9 81969546 81969901 -42106271 - L1_Rod LINE L1 -6474 698 306 6 1210 348 169 0 0 chr9 81970107 81970184 -42105988 + CT-rich Low_complexity Low_complexity 1 77 0 6 1210 891 258 44 35 chr9 81970217 81970534 -42105638 - Lx9 LINE L1 -182 7462 7143 6 1210 643 248 22 14 chr9 81970981 81971160 -42105012 + ORR1D2 LTR MaLR 206 405 -14 6 1210 260 211 10 40 chr9 81971581 81971680 -42104492 + CT-rich Low_complexity Low_complexity 1 96 0 6 1210 23 33 0 0 chr9 81971738 81971768 -42104404 + AT_rich Low_complexity Low_complexity 1 30 0 6 1210 337 327 20 0 chr9 81971771 81971872 -42104300 - PB1D10 SINE Alu -14 103 1 6 1210 1201 302 6 14 chr9 81972108 81972569 -42103603 - RMER1A Other Other -460 570 147 6 1210 516 16 0 0 chr9 81972633 81972694 -42103478 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1210 2971 18 15 0 chr9 81973155 81973496 -42102676 - ORR1A0 LTR MaLR 0 346 1 6 1210 371 86 17 33 chr9 81973496 81973556 -42102616 - ORR1A0-int LTR MaLR 0 1792 1734 6 1210 1792 266 232 30 chr9 81973537 81974341 -42101831 - ORR1A0-int LTR MaLR -314 1478 446 6 1210 491 45 65 54 chr9 81974341 81974434 -42101738 - L1Md_F3 LINE L1 -14 6570 6477 6 1210 2094 168 40 12 chr9 81974434 81974859 -42101313 - ORR1A0-int LTR MaLR -1347 445 1 6 1210 1484 168 93 54 chr9 81974863 81975196 -42100976 - ORR1A0 LTR MaLR -8 386 41 6 1210 282 138 0 44 chr9 81975347 81975415 -42100757 + Lx6 LINE L1 7390 7454 -6 6 1210 1107 82 7 0 chr9 81975422 81975569 -42100603 + B1_Mus1 SINE Alu 1 148 0 7 1210 277 312 40 8 chr9 81975626 81975752 -42100420 - L1M5 LINE L1 -1444 4702 4573 7 1210 960 247 79 4 chr9 81976851 81977091 -42099081 - Lx5 LINE L1 0 7050 6793 7 1210 1411 211 11 0 chr9 81977093 81977354 -42098818 + Lx5 LINE L1 6443 6706 -344 7 1210 2437 159 81 0 chr9 81977394 81977898 -42098274 - RMER17D2 LTR ERVK 0 809 265 7 1210 360 0 0 0 chr9 81977910 81977950 -42098222 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 7 1210 7378 38 0 1 chr9 81977979 81978860 -42097312 - L1Md_T LINE L1 -1 6581 5702 7 1210 1720 137 4 8 chr9 81978860 81979125 -42097047 - RMER17D2 LTR ERVK -625 264 1 7 1210 429 20 0 0 chr9 81979998 81980048 -42096124 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1210 394 290 93 0 chr9 81980502 81980609 -42095563 + ID_B1 SINE B4 87 203 -21 7 1210 558 29 0 0 chr9 81980613 81980681 -42095491 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1210 665 282 118 30 chr9 81980783 81981079 -42095093 - Lx7 LINE L1 -1228 6468 6147 7 1210 21 0 0 0 chr9 81981086 81981107 -42095065 + AT_rich Low_complexity Low_complexity 1 21 0 7 1210 2314 204 53 22 chr9 81981138 81981644 -42094528 + L1_Mur2 LINE L1 171 692 -6020 7 1210 495 330 100 26 chr9 81982343 81982748 -42093424 - Lx7 LINE L1 -39 7434 6983 7 1210 537 322 81 0 chr9 81982778 81982989 -42093183 - Lx8 LINE L1 -406 7067 6840 7 1210 256 276 159 52 chr9 81984147 81984418 -42091754 - L1MC3 LINE L1 -580 7205 6906 7 1210 414 323 93 64 chr9 81984429 81984836 -42091336 - L1MC3 LINE L1 -925 6860 6442 7 1210 2075 219 12 0 chr9 81984838 81985239 -42090933 - MTC LTR MaLR -15 406 1 7 1210 451 296 140 58 chr9 81985349 81985958 -42090214 - L1MC3 LINE L1 -1416 6369 5711 7 1210 250 299 21 0 chr9 81985991 81986088 -42090084 - L1MC3 LINE L1 -564 5620 5522 7 1210 210 171 0 0 chr9 81986231 81986266 -42089906 + T-rich Low_complexity Low_complexity 1 35 0 7 1210 1553 57 0 0 chr9 81986274 81986467 -42089705 - B2_Mm1t SINE B2 0 193 1 7 1210 348 57 0 0 chr9 81986489 81986542 -42089630 - L1_Mus1 LINE L1 0 6567 6515 7 1210 2888 37 0 3 chr9 81986542 81986896 -42089276 - L1Md_T LINE L1 0 6582 6230 7 1210 438 299 33 91 chr9 81987026 81987379 -42088793 - Lx7 LINE L1 -1801 5895 5595 7 1210 41 58 0 0 chr9 81988172 81988241 -42087931 + AT_rich Low_complexity Low_complexity 1 69 0 7 1210 4576 62 1 49 chr9 81988388 81989037 -42087135 - L1_Mus2 LINE L1 0 6566 5949 7 1210 196 295 82 21 chr9 81990284 81990381 -42085791 + L4 LINE RTE 226 328 -1701 7 1210 369 0 0 0 chr9 81990640 81990681 -42085491 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1210 24 0 0 0 chr9 81990745 81990769 -42085403 + AT_rich Low_complexity Low_complexity 1 24 0 7 1210 42 71 0 0 chr9 81990805 81990889 -42085283 + AT_rich Low_complexity Low_complexity 1 84 0 7 1210 416 350 12 53 chr9 81992030 81992199 -42083973 + MTEa LTR MaLR 1 162 -217 7 1210 1229 186 123 15 chr9 81992308 81992576 -42083596 - Lx4B LINE L1 -4 7054 6758 7 1210 238 119 368 35 chr9 81992629 81992716 -42083456 + MTEa LTR MaLR 260 375 -4 7 1210 2493 71 3 0 chr9 81992812 81993136 -42083036 - L1_Mus1 LINE L1 -2 6565 6241 7 1210 1290 68 6 0 chr9 81993136 81993299 -42082873 + L1_Mus1 LINE L1 6077 6240 -327 7 1210 271 374 10 10 chr9 81993387 81993487 -42082685 + MIRb SINE MIR 89 188 -80 7 1210 309 356 59 0 chr9 81994718 81994741 -42081431 - ID_B1 SINE B4 -10 214 90 7 1210 312 358 32 0 chr9 81994741 81994836 -42081336 - B1F2 SINE Alu -43 106 9 7 1210 4441 50 21 2 chr9 81995031 81995590 -42080582 - L1Md_F3 LINE L1 -15 6569 6000 7 1210 994 320 99 17 chr9 81995755 81996530 -42079642 - L1MC LINE L1 -2098 4048 3210 7 1210 24 32 0 0 chr9 81996886 81996917 -42079255 + AT_rich Low_complexity Low_complexity 1 31 0 7 1210 357 24 0 0 chr9 81997046 81997088 -42079084 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1210 244 67 0 0 chr9 81999837 81999867 -42076305 - L1_Mus2 LINE L1 -558 6009 5980 7 1210 1073 76 0 7 chr9 81999855 82000000 -42076172 + L1_Mus2 LINE L1 5999 6142 -424 7 1210 2566 69 107 36 chr9 82000000 82000391 -42075781 + L1_Mus1 LINE L1 6143 6561 -6 1 1210 576 0 0 0 chr9 82000391 82000455 -42075717 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1210 2785 47 15 0 chr9 82000520 82000800 -42075372 + ORR1A1 LTR MaLR 1 280 -66 3 1210 260 27 27 0 chr9 82000800 82000837 -42075335 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 1210 2785 47 15 0 chr9 82000837 82000897 -42075275 + ORR1A1 LTR MaLR 281 344 -2 3 1210 234 244 52 118 chr9 82001023 82001158 -42075014 - LTR78 LTR ERV1 -206 1098 973 5 1210 7798 146 65 17 chr9 82001399 82002522 -42073650 - Lx2A1 LINE L1 -1 6996 5788 6 1210 207 0 0 0 chr9 82002522 82002545 -42073627 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1210 1079 72 0 7 chr9 82002545 82002684 -42073488 - B1_Mm SINE Alu -9 138 1 8 1210 7798 182 14 22 chr9 82002684 82003181 -42072991 - Lx2A1 LINE L1 -90 5787 5294 6 1210 1204 105 27 11 chr9 82003181 82003364 -42072808 - B2_Mm2 SINE B2 -9 186 1 9 1210 7798 182 14 22 chr9 82003364 82003928 -42072244 - Lx2A1 LINE L1 -584 5293 4731 6 1210 210 37 0 0 chr9 82003928 82003955 -42072217 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1210 7798 182 14 22 chr9 82003955 82004354 -42071818 - Lx2A1 LINE L1 -1147 4730 4331 6 1210 366 278 56 0 chr9 82005532 82005622 -42070550 + B3A SINE B2 1 95 -103 1 1210 5036 113 11 8 chr9 82005630 82006391 -42069781 + Lx3_Mus LINE L1 6245 7007 -2 1 1210 38 39 0 0 chr9 82006942 82006994 -42069178 + AT_rich Low_complexity Low_complexity 1 52 0 1 1210 520 267 126 36 chr9 82007239 82007533 -42068639 - L1_Mur3 LINE L1 -3842 2005 1682 1 1210 1241 291 69 101 chr9 82007519 82008255 -42067917 + Lx8 LINE L1 6755 7467 -6 1 1210 343 360 58 64 chr9 82008911 82009083 -42067089 + LTR33C LTR ERVL 444 614 -15 1 1210 722 136 8 0 chr9 82010746 82010878 -42065294 + (TTTC)n Simple_repeat Simple_repeat 2 134 0 1 1210 1142 76 0 0 chr9 82010880 82011025 -42065147 - B1_Mus2 SINE Alu 0 147 3 1 1210 781 361 65 45 chr9 82011218 82011755 -42064417 + MLT1E2 LTR MaLR 80 627 0 1 1210 2897 259 73 66 chr9 82012664 82014059 -42062113 + Lx9 LINE L1 4554 5996 -1648 2 1210 883 308 102 70 chr9 82014178 82014621 -42061551 + Lx9 LINE L1 6462 6918 -726 2 1210 359 165 12 0 chr9 82014632 82014717 -42061455 + CT-rich Low_complexity Low_complexity 2 87 0 2 1210 7986 150 34 58 chr9 82014846 82016427 -42059745 - L1_Mur2 LINE L1 -357 5520 3978 2 1210 6061 118 90 9 chr9 82016454 82017511 -42058661 + Lx LINE L1 5497 6639 -15 2 1210 952 131 65 0 chr9 82018533 82018686 -42057486 - B2_Mm2 SINE B2 -31 164 2 2 1210 6154 63 17 16 chr9 82019442 82020262 -42055910 - L1Md_F2 LINE L1 -12 6570 5750 2 1210 713 310 20 40 chr9 82020332 82020584 -42055588 + B4 SINE B4 1 247 -45 2 1210 216 0 0 0 chr9 82020634 82020658 -42055514 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1210 474 131 0 0 chr9 82020918 82021017 -42055155 + (TC)n Simple_repeat Simple_repeat 2 100 0 2 1210 294 29 0 0 chr9 82021017 82021052 -42055120 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1210 37808 43 0 3 chr9 82021280 82027536 -42048636 - L1Md_T LINE L1 0 6585 250 3 1210 230 185 74 0 chr9 82027519 82027573 -42048599 - L1MD LINE L1 -3157 2989 2932 3 1210 1032 244 82 21 chr9 82027575 82027881 -42048291 - ORR1D1 LTR MaLR -65 313 1 3 1210 389 143 0 0 chr9 82027908 82027978 -42048194 - Lx2 LINE L1 0 6997 6928 3 1210 1374 235 135 46 chr9 82029226 82029707 -42046465 - RMER1C Other Other -7 1335 812 3 1210 1446 93 0 31 chr9 82030244 82030466 -42045706 - L1Md_F2 LINE L1 0 6582 6368 3 1210 195 139 0 0 chr9 82030797 82030833 -42045339 + (CATA)n Simple_repeat Simple_repeat 2 37 0 3 1210 648 59 0 0 chr9 82030833 82030918 -42045254 + (TG)n Simple_repeat Simple_repeat 1 85 0 3 1210 353 373 68 0 chr9 82031327 82031488 -42044684 - Arthur1A DNA Tip100 0 177 6 3 1210 5112 122 25 22 chr9 82032063 82032907 -42043265 - Lx LINE L1 -3 6651 5806 3 1210 939 291 59 75 chr9 82033295 82033422 -42042750 - L1M2 LINE L1 -1081 5062 4943 4 1210 1984 47 16 0 chr9 82033422 82033678 -42042494 - L1Md_A LINE L1 0 6582 6323 4 1210 939 291 59 75 chr9 82033678 82034111 -42042061 - L1M2 LINE L1 -1201 4942 4511 4 1210 384 289 46 36 chr9 82034139 82034521 -42041651 + L1M2 LINE L1 5072 5477 -370 4 1210 981 286 79 15 chr9 82034534 82034864 -42041308 + Lx6 LINE L1 7079 7429 -31 4 1210 236 250 18 0 chr9 82034904 82034960 -42041212 + B3 SINE B2 4 60 -156 4 1210 1295 73 28 11 chr9 82035012 82035192 -42040980 - B2_Mm2 SINE B2 -11 184 2 4 1210 306 208 126 55 chr9 82035197 82035324 -42040848 + L1M2 LINE L1 5693 5828 -472 4 1210 402 39 0 0 chr9 82035404 82035456 -42040716 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1210 1079 198 14 85 chr9 82035795 82036088 -42040084 - Lx9 LINE L1 -9 7635 7364 4 1210 623 139 23 15 chr9 82036768 82036899 -42039273 + Lx3B LINE L1 6838 6969 -4 4 1210 288 0 0 0 chr9 82036902 82036934 -42039238 + (TAA)n Simple_repeat Simple_repeat 3 34 0 4 1210 953 147 6 0 chr9 82036934 82037104 -42039068 + GA-rich Low_complexity Low_complexity 1 171 0 5 1210 328 286 61 48 chr9 82037131 82037278 -42038894 + B1F1 SINE Alu 1 149 0 5 1210 336 61 76 0 chr9 82038465 82038531 -42037641 + (TTTG)n Simple_repeat Simple_repeat 1 71 0 5 1210 24 32 0 0 chr9 82039352 82039383 -42036789 + AT_rich Low_complexity Low_complexity 1 31 0 5 1210 870 244 65 10 chr9 82039401 82039600 -42036572 + B3 SINE B2 1 210 -6 5 1210 318 292 201 15 chr9 82039896 82040071 -42036101 - MIR SINE MIR -44 224 13 5 1210 770 305 42 20 chr9 82041259 82041664 -42034508 - L1M4b LINE L1 -5716 1618 1205 5 1210 261 57 0 0 chr9 82041762 82041797 -42034375 + (CAAAG)n Simple_repeat Simple_repeat 2 36 0 5 1210 246 312 106 35 chr9 82042437 82042550 -42033622 - ID_B1 SINE B4 -13 211 91 5 1210 1552 211 50 6 chr9 82042575 82042933 -42033239 + ORR1D1 LTR MaLR 1 374 0 5 1210 420 20 0 0 chr9 82043052 82043101 -42033071 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1210 1142 62 7 7 chr9 82043568 82043714 -42032458 + B1_Mus2 SINE Alu 2 147 0 6 1210 342 124 10 30 chr9 82043714 82043814 -42032358 + A-rich Low_complexity Low_complexity 2 99 0 6 1210 572 319 75 20 chr9 82043836 82044089 -42032083 + Lx9 LINE L1 6471 6737 -907 6 1210 974 258 25 16 chr9 82044269 82044513 -42031659 - MTD LTR MaLR -171 248 3 6 1210 372 330 56 42 chr9 82044514 82044729 -42031443 + Lx9 LINE L1 6953 7170 -474 6 1210 405 95 0 0 chr9 82044736 82044799 -42031373 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1210 30 27 0 0 chr9 82044806 82044843 -42031329 + AT_rich Low_complexity Low_complexity 1 37 0 6 1210 9891 155 40 13 chr9 82045494 82046915 -42029257 + L1VL4 LINE L1 499 1968 -1591 6 1210 3698 131 42 46 chr9 82046915 82047669 -42028503 + RMER17A LTR ERVK 1 751 0 6 1210 9891 153 44 16 chr9 82047669 82048566 -42027606 + L1VL4 LINE L1 1969 2870 -689 6 1210 2077 233 88 20 chr9 82048566 82049113 -42027059 - RLTR31A_Mm LTR ERVK 0 584 1 6 1210 6158 141 18 81 chr9 82049113 82050430 -42025742 + Lx2B LINE L1 3225 4458 -1428 7 151 8103 147 23 30 chr9 82050426 82052136 -42024036 + Lx2B LINE L1 5285 6989 -11 7 1211 520 132 63 56 chr9 82053000 82053147 -42023025 + Lx3_Mus LINE L1 6812 7001 -8 7 1211 22 0 0 0 chr9 82053181 82053203 -42022969 + AT_rich Low_complexity Low_complexity 1 22 0 7 1211 306 0 0 0 chr9 82053502 82053536 -42022636 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1211 901 92 7 7 chr9 82054193 82054336 -42021836 + (TCC)n Simple_repeat Simple_repeat 3 145 0 7 1211 397 56 0 53 chr9 82054341 82054416 -42021756 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 7 1211 1072 101 0 7 chr9 82054419 82054568 -42021604 - B1_Mus1 SINE Alu 0 148 1 7 1211 473 198 9 0 chr9 82054605 82054711 -42021461 + (TA)n Simple_repeat Simple_repeat 2 108 0 7 1211 910 275 55 16 chr9 82055304 82055559 -42020613 - MTD LTR MaLR -13 406 142 7 1211 230 259 46 23 chr9 82056039 82056126 -42020046 + L1M5 LINE L1 5572 5660 -534 7 1211 199 372 64 0 chr9 82056874 82056968 -42019204 - MIRm SINE MIR -8 268 169 8 1211 238 130 0 0 chr9 82057500 82057580 -42018592 - L1_Mus3 LINE L1 0 6636 6574 8 1211 4592 60 10 7 chr9 82057590 82058192 -42017980 - L1Md_F2 LINE L1 0 6582 5979 8 1211 13248 60 1 1 chr9 82058192 82060033 -42016139 + L1Md_F2 LINE L1 4179 6019 -563 8 1211 287 375 79 52 chr9 82060363 82060630 -42015542 - LTR16C LTR ERVL -63 426 153 8 1211 369 357 63 38 chr9 82061108 82061425 -42014747 + L1M3b LINE L1 15 339 -5942 8 1211 4333 35 0 0 chr9 82061422 82061936 -42014236 - L1Md_F2 LINE L1 -142 5741 5228 8 1211 6676 48 1 2 chr9 82061936 82062763 -42013409 + L1Md_F2 LINE L1 5745 6570 -12 8 1211 348 379 115 39 chr9 82062766 82063148 -42013024 + L1M3b LINE L1 326 736 -5545 8 1211 235 394 35 0 chr9 82063336 82063478 -42012694 - ORR1E LTR MaLR -212 147 1 8 1211 924 143 0 7 chr9 82063514 82063662 -42012510 + URR1A DNA MER1_type 80 226 0 8 1211 808 290 50 41 chr9 82063779 82064337 -42011835 - L1M2 LINE L1 -2831 3312 2750 8 1211 428 212 29 57 chr9 82064436 82064576 -42011596 + L1M3b LINE L1 2561 2696 -3651 8 1211 627 322 60 19 chr9 82064736 82065169 -42011003 + L1M3b LINE L1 4808 5258 -1086 8 1211 333 47 0 0 chr9 82065199 82065242 -42010930 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1211 450 0 0 0 chr9 82065242 82065291 -42010881 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 1211 318 186 155 0 chr9 82065346 82065443 -42010729 + Lx9 LINE L1 7526 7637 -7 9 1211 1471 35 17 0 chr9 82065674 82065848 -42010324 + L1Md_F2 LINE L1 5410 5586 -297 9 1211 8001 50 2 1 chr9 82065849 82066843 -42009329 + L1Md_F2 LINE L1 5588 6582 0 9 1211 232 241 0 0 chr9 82066935 82066989 -42009183 + L1M2 LINE L1 5843 5896 -404 9 1211 1660 181 62 0 chr9 82067061 82067380 -42008792 + RLTR15 LTR ERVK 1 338 -21 9 1211 238 50 24 24 chr9 82067380 82067421 -42008751 + (CAA)n Simple_repeat Simple_repeat 2 42 0 9 1211 1660 181 62 0 chr9 82067421 82067437 -42008735 + RLTR15 LTR ERVK 339 356 -3 9 1211 223 290 0 61 chr9 82067557 82067623 -42008549 + B1_Mur4 SINE Alu 41 102 -48 9 1211 276 241 23 0 chr9 82067731 82067818 -42008354 + MYSERV6-int LTR ERVK 6407 6495 -2464 9 1211 313 279 93 59 chr9 82067892 82068010 -42008162 + B1_Mur3 SINE Alu 18 139 -10 9 1211 188 67 0 32 chr9 82068012 82068043 -42008129 + (TAA)n Simple_repeat Simple_repeat 2 31 0 9 1211 1116 22 0 14 chr9 82068051 82068191 -42007981 + B1_Mus1 SINE Alu 11 148 0 1 1211 892 220 79 26 chr9 82068430 82068734 -42007438 + MYSERV16_I-int LTR ERVK 76 395 -1931 1 1211 17366 156 19 3 chr9 82068734 82072765 -42003407 + L1VL2 LINE L1 515 4610 -1276 1 1211 365 280 77 104 chr9 82072861 82073276 -42002896 + Lx9 LINE L1 7222 7625 -19 1 1211 511 238 30 0 chr9 82073285 82073386 -42002786 - B3 SINE B2 -111 105 2 1 1211 453 376 57 50 chr9 82073716 82074221 -42001951 - MER77 LTR ERVL -1 562 67 1 1211 467 299 0 45 chr9 82075560 82075693 -42000479 - MT2A LTR ERVL -91 442 316 1 1211 21 0 0 0 chr9 82076250 82076271 -41999901 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 390 297 26 40 chr9 82076672 82076823 -41999349 + B1F SINE Alu 1 149 0 1 1211 1264 300 71 50 chr9 82076932 82077644 -41998528 + Lx5 LINE L1 6478 7457 -3 1 1211 586 323 100 22 chr9 82077951 82078339 -41997833 - ORR1D1-int LTR MaLR -1293 442 45 1 1211 794 252 24 28 chr9 82079551 82079763 -41996409 + B3 SINE B2 1 211 -5 1 1211 23900 156 8 35 chr9 82079903 82080814 -41995358 + L1Md_F2 LINE L1 468 1360 -4523 1 1211 1596 37 0 0 chr9 82080814 82081002 -41995170 + B2_Mm1t SINE B2 1 188 -5 1 1211 23900 62 1 60 chr9 82081002 82084403 -41991769 + L1Md_F2 LINE L1 1361 4551 -1332 1 1211 642 124 0 0 chr9 82084403 82084492 -41991680 + L1Md_F2 LINE L1 5498 5586 -297 1 1211 7452 81 3 0 chr9 82084492 82085485 -41990687 + L1Md_F2 LINE L1 5587 6582 0 1 1211 815 252 65 91 chr9 82085901 82086285 -41989887 - ORR1D1 LTR MaLR 0 374 1 1 1211 1653 169 73 6 chr9 82086462 82086789 -41989383 + L1_Mur3 LINE L1 3344 3692 -2188 1 1211 744 345 53 25 chr9 82087062 82087383 -41988789 - MLT1A0 LTR MaLR -5 360 31 1 1211 423 0 0 0 chr9 82088799 82088846 -41987326 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 1 1211 225 83 0 0 chr9 82088848 82088884 -41987288 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1211 262 296 111 17 chr9 82091048 82091165 -41985007 + B4A SINE B4 161 288 -4 1 1211 346 116 14 28 chr9 82091181 82091252 -41984920 + (CATA)n Simple_repeat Simple_repeat 1 70 0 1 1211 3019 48 0 10 chr9 82091892 82092275 -41983897 + L1Md_F2 LINE L1 6194 6572 -10 1 1211 443 298 118 0 chr9 82092512 82092690 -41983482 + Lx8 LINE L1 6720 6918 -555 1 1211 791 307 33 22 chr9 82092695 82092971 -41983201 + Lx8 LINE L1 7187 7465 -8 1 1211 582 146 41 5 chr9 82093388 82093584 -41982588 + (TCTA)n Simple_repeat Simple_repeat 1 203 0 1 1211 253 368 123 110 chr9 82093851 82094224 -41981948 - LTR88b LTR Gypsy? -323 514 137 1 1211 296 402 7 43 chr9 82093867 82094005 -41982167 - LTR88a LTR Gypsy -345 471 339 1 1211 351 0 0 0 chr9 82095687 82095726 -41980446 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1211 634 250 64 59 chr9 82095906 82096110 -41980062 - Lx9 LINE L1 -520 7124 6920 1 1211 1920 159 6 6 chr9 82096651 82096962 -41979210 - RLTR10E LTR ERVK 0 311 1 1 1211 201 147 0 0 chr9 82097035 82097069 -41979103 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1211 268 284 8 49 chr9 82097306 82097381 -41978791 + polypyrimidine Low_complexity Low_complexity 46 118 0 1 1211 696 83 0 0 chr9 82097381 82097477 -41978695 + (TTCC)n Simple_repeat Simple_repeat 4 99 0 1 1211 268 284 8 49 chr9 82097477 82097494 -41978678 + polypyrimidine Low_complexity Low_complexity 29 45 0 1 1211 1251 56 6 22 chr9 82097494 82097677 -41978495 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1211 268 284 8 49 chr9 82097677 82097705 -41978467 + polypyrimidine Low_complexity Low_complexity 2 28 0 1 1211 241 286 31 16 chr9 82099353 82099417 -41976755 - MIRb SINE MIR -92 176 112 1 1211 12400 155 39 10 chr9 82100354 82103723 -41972449 + L1VL2 LINE L1 407 3879 -2004 1 1211 228 137 40 14 chr9 82103833 82103907 -41972265 + A-rich Low_complexity Low_complexity 3 78 0 1 1211 386 360 21 53 chr9 82105424 82105612 -41970560 - MT2A LTR ERVL -295 238 57 1 1211 283 287 11 44 chr9 82105535 82105626 -41970546 - MTE2b LTR MaLR -246 133 46 1 1211 307 310 71 33 chr9 82105779 82106019 -41970153 - L1M2 LINE L1 -753 5538 5290 1 1211 308 389 63 15 chr9 82106065 82106271 -41969901 - L1M2 LINE L1 -1314 4829 4614 1 1211 21 0 0 0 chr9 82107155 82107176 -41968996 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 797 304 43 113 chr9 82107871 82108265 -41967907 - MTE2b LTR MaLR 0 379 14 1 1211 342 322 35 9 chr9 82108265 82108381 -41967791 - MTE2b-int LTR MaLR 0 1580 1462 1 1211 450 328 0 58 chr9 82108390 82108410 -41967762 - B3A SINE B2 0 198 181 1 1211 486 0 0 0 chr9 82108410 82108464 -41967708 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1211 450 328 0 58 chr9 82108464 82108582 -41967590 - B3A SINE B2 -18 180 68 1 1211 1989 138 0 76 chr9 82108586 82108930 -41967242 + ORR1A3 LTR MaLR 1 318 -8 1 1211 1421 322 82 35 chr9 82109016 82109915 -41966257 - MTE2b-int LTR MaLR -192 1388 200 1 1211 558 281 775 10 chr9 82113467 82113617 -41962555 + ORR1C1 LTR MaLR 1 258 -120 1 1211 327 105 0 0 chr9 82113617 82113674 -41962498 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 1 1211 558 227 16 8 chr9 82113674 82113792 -41962380 + ORR1C1 LTR MaLR 259 378 0 1 1211 385 281 0 0 chr9 82114394 82114490 -41961682 + Lx7 LINE L1 7205 7300 -396 1 1211 1470 5 5 9 chr9 82114502 82114719 -41961453 + (TTC)n Simple_repeat Simple_repeat 1 216 0 1 1211 1017 79 0 0 chr9 82114719 82114859 -41961313 + (TTCTCC)n Simple_repeat Simple_repeat 2 141 0 1 1211 1410 17 6 11 chr9 82114859 82115038 -41961134 + (TTC)n Simple_repeat Simple_repeat 1 178 0 1 1211 367 292 0 0 chr9 82115441 82115537 -41960635 + Lx7 LINE L1 7205 7300 -396 1 1211 783 0 0 0 chr9 82115549 82115636 -41960536 + (TTC)n Simple_repeat Simple_repeat 1 87 0 1 1211 306 299 43 0 chr9 82115910 82116027 -41960145 - HAL1 LINE L1 -875 1632 1511 1 1211 444 344 100 53 chr9 82116458 82116717 -41959455 - MLT1D LTR MaLR -10 495 223 1 1211 1076 84 0 43 chr9 82116717 82116904 -41959268 + (TCCCC)n Simple_repeat Simple_repeat 2 180 0 1 1211 444 344 100 53 chr9 82116904 82116945 -41959227 - MLT1D LTR MaLR -283 222 182 1 1211 261 0 0 0 chr9 82116945 82116974 -41959198 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 1211 732 180 0 0 chr9 82116974 82117096 -41959076 - B1_Mus2 SINE Alu -6 141 20 1 1211 3619 39 67 2 chr9 82117205 82117813 -41958359 - L1Md_F2 LINE L1 -507 6075 5428 1 1211 4083 57 4 2 chr9 82117813 82118327 -41957845 + L1Md_F2 LINE L1 6068 6582 0 1 1211 231 306 0 16 chr9 82118679 82118742 -41957430 - ID4_ SINE ID -19 64 3 1 1211 989 55 0 0 chr9 82118828 82118956 -41957216 - L1_Mus1 LINE L1 -1 6566 6439 1 1211 1118 65 0 0 chr9 82118956 82119094 -41957078 + L1_Mus1 LINE L1 6296 6433 -134 1 1211 2161 286 53 36 chr9 82119243 82119329 -41956843 + Lx9 LINE L1 6306 6418 -1226 1 1211 221 0 35 0 chr9 82119329 82119358 -41956814 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1 1211 2161 286 53 36 chr9 82119358 82120045 -41956127 + Lx9 LINE L1 6419 7092 -552 1 1211 267 329 14 14 chr9 82120048 82120187 -41955985 + Lx9 LINE L1 7259 7397 -247 1 1211 1168 68 0 0 chr9 82120187 82120334 -41955838 + B1_Mus1 SINE Alu 2 148 0 1 1211 189 0 0 0 chr9 82120406 82120427 -41955745 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1211 207 0 0 0 chr9 82120431 82120454 -41955718 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1211 198 191 0 0 chr9 82120592 82120634 -41955538 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1211 1856 194 225 18 chr9 82120763 82121257 -41954915 - RMER19B LTR ERVK 0 902 307 1 1211 466 379 19 6 chr9 82121324 82121486 -41954686 + RSINE1 SINE B4 2 165 0 1 1211 183 363 9 38 chr9 82121791 82121897 -41954275 - MIRc SINE MIR -126 142 40 1 1211 22 35 0 0 chr9 82123010 82123039 -41953133 + AT_rich Low_complexity Low_complexity 1 29 0 1 1211 3257 154 9 23 chr9 82123044 82123601 -41952571 - Lx3C LINE L1 -8 6968 6420 1 1211 2150 125 60 25 chr9 82123603 82124006 -41952166 + Lx3C LINE L1 6001 6417 -559 1 1211 207 88 0 0 chr9 82124011 82124045 -41952127 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1211 25 51 0 0 chr9 82124231 82124270 -41951902 + AT_rich Low_complexity Low_complexity 1 39 0 1 1211 251 357 26 18 chr9 82124689 82124917 -41951255 + L1MEg LINE L1 809 1038 -5162 1 1211 22 0 0 0 chr9 82124942 82124964 -41951208 + AT_rich Low_complexity Low_complexity 1 22 0 1 1211 228 156 0 0 chr9 82125242 82125287 -41950885 + L1MEg LINE L1 1426 1470 -4730 1 1211 3054 207 19 73 chr9 82125607 82126295 -41949877 - Lx5 LINE L1 0 7050 6400 1 1211 1432 149 61 8 chr9 82126296 82126559 -41949613 + L1_Mur2 LINE L1 4607 4883 -994 1 1211 7000 51 3 0 chr9 82127671 82128534 -41947638 - L1Md_F2 LINE L1 0 6582 5717 1 1211 309 320 102 79 chr9 82128902 82129221 -41946951 + MTD LTR MaLR 27 361 -18 1 1211 460 284 42 21 chr9 82129414 82129558 -41946614 - MLT1A1 LTR MaLR -7 401 255 1 1211 371 133 160 20 chr9 82130686 82130786 -41945386 - Lx9 LINE L1 -14 7630 7517 1 1211 414 0 0 0 chr9 82130787 82130833 -41945339 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1211 503 159 91 0 chr9 82130833 82130965 -41945207 - Lx9 LINE L1 -187 7457 7314 1 1211 195 316 50 30 chr9 82131984 82132085 -41944087 + L3 LINE CR1 44 146 -4343 1 1211 227 104 62 0 chr9 82132235 82132283 -41943889 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 1 1211 494 337 104 11 chr9 82132565 82132748 -41943424 - B4 SINE B4 -43 249 50 1 1211 351 65 0 0 chr9 82132811 82132857 -41943315 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 1 1211 3461 58 0 2 chr9 82132866 82133300 -41942872 - L1_Mus1 LINE L1 0 6567 6135 1 1211 415 97 0 16 chr9 82133300 82133353 -41942819 - L1_Mus1 LINE L1 -299 6268 6216 1 1211 28 29 0 0 chr9 82133701 82133736 -41942436 + AT_rich Low_complexity Low_complexity 1 35 0 1 1211 4790 156 70 18 chr9 82134069 82134926 -41941246 + RMER19B LTR ERVK 1 902 0 1 1211 879 231 0 11 chr9 82135259 82135443 -41940729 + Lx9 LINE L1 7230 7411 -233 1 1211 310 136 30 15 chr9 82135541 82135579 -41940593 + polypurine Low_complexity Low_complexity 1 40 0 1 1211 1170 100 0 0 chr9 82135579 82135759 -41940413 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1211 310 136 30 15 chr9 82135759 82135787 -41940385 + polypurine Low_complexity Low_complexity 41 68 0 1 1211 312 226 0 11 chr9 82135787 82135881 -41940291 + Lx9 LINE L1 7551 7643 -1 1 1211 333 0 0 0 chr9 82136032 82136069 -41940103 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1211 267 330 50 26 chr9 82136156 82136581 -41939591 + L1M2 LINE L1 2239 2603 -4246 1 1211 670 355 29 33 chr9 82136944 82137186 -41938986 + B4A SINE B4 48 288 -4 1 1211 414 0 0 0 chr9 82137214 82137260 -41938912 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1211 263 331 92 31 chr9 82137264 82137460 -41938712 + L1M2 LINE L1 6198 6405 -588 1 1211 203 0 37 0 chr9 82137464 82137491 -41938681 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1211 5179 83 11 14 chr9 82137496 82138236 -41937936 - L1_Mus1 LINE L1 -1 6566 5829 2 1211 5305 126 73 19 chr9 82138421 82139009 -41937163 - RMER17B LTR ERVK 0 958 353 2 1211 444 37 0 0 chr9 82139009 82139063 -41937109 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1211 5305 126 73 19 chr9 82139063 82139383 -41936789 - RMER17B LTR ERVK -606 352 2 2 1211 296 247 110 0 chr9 82139400 82139473 -41936699 - RSINE1 SINE B4 -81 84 4 2 1211 1268 161 9 5 chr9 82140009 82140233 -41935939 - URR1A DNA MER1_type 0 226 2 2 1211 243 225 0 0 chr9 82140403 82140474 -41935698 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1211 1206 76 69 11 chr9 82140687 82140861 -41935311 + B2_Mm2 SINE B2 3 186 -9 2 1211 2530 211 194 6 chr9 82142041 82142811 -41933361 + RMER1B Other Other 113 1062 -4 2 1211 368 298 93 47 chr9 82142927 82143184 -41932988 + L1MEe LINE L1 469 737 -4117 2 1211 307 321 65 45 chr9 82143194 82143393 -41932779 + MER63A DNA AcHobo 6 208 -2 2 1211 23 0 0 0 chr9 82143515 82143538 -41932634 + AT_rich Low_complexity Low_complexity 1 23 0 2 1211 465 349 36 0 chr9 82143572 82143738 -41932434 - B3A SINE B2 -21 177 6 2 1211 414 0 0 0 chr9 82144013 82144059 -41932113 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1211 534 16 0 0 chr9 82144339 82144402 -41931770 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1211 564 15 0 0 chr9 82144402 82144466 -41931706 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1211 2493 112 31 15 chr9 82145197 82145586 -41930586 + MTB LTR MaLR 1 395 -5 2 1211 890 205 116 0 chr9 82145592 82145782 -41930390 - URR1A DNA MER1_type -14 212 1 2 1211 2026 250 41 22 chr9 82146920 82147807 -41928365 - Lx7 LINE L1 -1450 6246 5340 2 1211 339 270 113 5 chr9 82148175 82148306 -41927866 + MTE2a LTR MaLR 41 181 -238 2 1211 438 20 0 0 chr9 82148324 82148375 -41927797 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1211 358 273 59 38 chr9 82148591 82148827 -41927345 + L1MC LINE L1 2708 2948 -3198 2 1211 1265 259 71 45 chr9 82148843 82149292 -41926880 + Lx8 LINE L1 6663 7123 -350 2 1211 311 361 17 0 chr9 82149367 82149486 -41926686 + Lx8 LINE L1 7151 7271 -202 2 1211 1343 277 29 19 chr9 82149519 82149894 -41926278 + Lx7 LINE L1 6185 6563 -1133 2 1211 2648 178 116 35 chr9 82149897 82150705 -41925467 + RMER17D LTR ERVK 1 874 -15 2 1211 3233 237 45 57 chr9 82150733 82151615 -41924557 + Lx7 LINE L1 6561 7432 -264 2 1211 4755 144 2 15 chr9 82151659 82152457 -41923715 - Lx2 LINE L1 -1 6996 6209 2 1211 240 130 0 98 chr9 82152457 82152508 -41923664 - Lx2 LINE L1 -661 5993 5948 2 1211 471 316 47 19 chr9 82155535 82155843 -41920329 + L1MA6 LINE L1 5974 6294 -6 2 1211 1331 237 144 14 chr9 82155899 82156254 -41919918 - MTD LTR MaLR -7 412 12 2 1211 297 0 0 0 chr9 82156258 82156291 -41919881 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2 1211 24 0 0 0 chr9 82157052 82157076 -41919096 + AT_rich Low_complexity Low_complexity 1 24 0 2 1211 3856 258 58 23 chr9 82157099 82158237 -41917935 - Lx9 LINE L1 -47 7597 6420 2 1211 1026 141 0 0 chr9 82158302 82158472 -41917700 + (TCC)n Simple_repeat Simple_repeat 3 172 0 2 1211 312 27 0 0 chr9 82158946 82158983 -41917189 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1211 543 69 0 0 chr9 82159251 82159323 -41916849 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1211 657 0 0 0 chr9 82159328 82159401 -41916771 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 2 1211 3865 176 8 3 chr9 82161575 82162304 -41913868 - L1_Mur1 LINE L1 -3540 2346 1614 2 1211 469 81 11 34 chr9 82162463 82162552 -41913620 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 1211 819 162 257 0 chr9 82163452 82163631 -41912541 - URR1B DNA MER1_type 0 225 1 2 1211 599 254 93 28 chr9 82163642 82163857 -41912315 + RMER15 LTR ERVL 23 251 -324 2 1211 511 273 39 0 chr9 82163894 82164022 -41912150 + RMER15 LTR ERVL 443 575 0 2 1211 22 56 0 0 chr9 82164068 82164104 -41912068 + AT_rich Low_complexity Low_complexity 1 36 0 2 1211 219 69 0 0 chr9 82164543 82164572 -41911600 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1211 6126 253 45 25 chr9 82165748 82167320 -41908852 + Lx6 LINE L1 5855 7456 -4 2 1211 390 300 84 45 chr9 82167379 82167557 -41908615 - MIR SINE MIR -22 240 56 2 1211 245 244 60 24 chr9 82167849 82167933 -41908239 + L1MA5 LINE L1 6175 6261 -39 2 1211 6492 218 39 6 chr9 82168389 82168513 -41907659 + Lx6 LINE L1 5511 5637 -1823 2 1211 198 0 0 0 chr9 82168513 82168535 -41907637 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2 1211 6492 264 57 24 chr9 82168535 82168813 -41907359 + Lx6 LINE L1 5638 5920 -1540 2 1211 3021 174 107 25 chr9 82168813 82169448 -41906724 - RMER6C LTR ERVK -3 687 1 2 1211 6492 264 57 24 chr9 82169448 82170919 -41905253 + Lx6 LINE L1 5921 7447 -13 2 1211 186 43 0 0 chr9 82171093 82171116 -41905056 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1211 216 0 0 0 chr9 82171587 82171611 -41904561 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1211 311 58 0 55 chr9 82171662 82171717 -41904455 + (CAAAA)n Simple_repeat Simple_repeat 3 54 0 2 1211 1176 252 11 51 chr9 82172989 82173265 -41902907 + MTD LTR MaLR 1 265 -154 2 1211 195 42 0 0 chr9 82173269 82173293 -41902879 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1211 1118 131 18 0 chr9 82173293 82173461 -41902711 - B2_Mm2 SINE B2 -13 182 12 2 1211 229 354 0 0 chr9 82173388 82173470 -41902702 - RSINE1 SINE B4 -80 85 4 2 1211 1127 247 48 37 chr9 82173585 82173959 -41902213 - ORR1C2 LTR MaLR -4 380 3 2 1211 2721 263 98 66 chr9 82174016 82175343 -41900829 + ORR1D2-int LTR MaLR 1 1370 0 2 1211 712 260 205 7 chr9 82175346 82175651 -41900521 + ORR1D2 LTR MaLR 5 370 0 2 1211 25 0 0 0 chr9 82175941 82175966 -41900206 + AT_rich Low_complexity Low_complexity 1 25 0 2 1211 865 280 50 25 chr9 82176421 82176659 -41899513 - B4A SINE B4 -43 249 6 2 1211 225 333 81 76 chr9 82176767 82176952 -41899220 - MIR SINE MIR -79 189 1 2 1211 25 31 0 0 chr9 82177779 82177811 -41898361 + AT_rich Low_complexity Low_complexity 1 32 0 2 1211 2097 279 117 35 chr9 82177811 82178734 -41897438 - Lx8 LINE L1 0 7473 6475 2 1211 537 156 0 0 chr9 82178892 82178988 -41897184 + (TAA)n Simple_repeat Simple_repeat 1 96 0 2 1211 727 289 195 11 chr9 82178992 82179204 -41896968 - ORR1D2 LTR MaLR -30 340 84 2 1211 755 149 291 0 chr9 82179204 82179379 -41896793 - URR1A DNA MER1_type 0 226 1 2 1211 727 289 195 11 chr9 82179379 82179453 -41896719 - ORR1D2 LTR MaLR -287 83 2 2 1211 527 340 94 56 chr9 82180216 82180556 -41895616 - MTEa LTR MaLR -26 353 1 2 1211 1366 270 22 44 chr9 82180587 82180994 -41895178 - MMAR1 DNA Mariner 0 1286 889 2 1211 265 326 82 67 chr9 82181052 82181246 -41894926 - RLTR25A LTR ERVK 0 1103 832 2 151 6727 129 10 8 chr9 82181427 82182774 -41893398 - L1_Mus4 LINE L1 0 6636 5289 2 1212 7296 9 1 0 chr9 82182818 82183635 -41892537 - L1Md_T LINE L1 0 6582 5765 2 1212 9536 17 0 0 chr9 82183635 82184731 -41891441 + L1Md_T LINE L1 4691 5786 -97 2 1212 1914 182 8 96 chr9 82184737 82185217 -41890955 - L1_Mus4 LINE L1 -585 5298 4861 2 1212 5832 77 10 1 chr9 82185200 82186005 -41890167 - L1Md_F2 LINE L1 -1934 3949 3138 2 1212 12595 67 3 2 chr9 82186002 82187643 -41888529 + L1Md_F2 LINE L1 3945 5586 -297 2 1212 7762 53 14 10 chr9 82187644 82188635 -41887537 + L1Md_F2 LINE L1 5588 6582 0 2 1212 2974 153 15 0 chr9 82188654 82189176 -41886996 - L1_Mur2 LINE L1 -1008 4869 4340 2 1212 10824 164 21 4 chr9 82189176 82190870 -41885302 + L1_Mur1 LINE L1 2178 3905 -1981 2 1212 405 0 0 0 chr9 82190870 82190915 -41885257 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1212 10824 164 21 4 chr9 82190915 82191213 -41884959 + L1_Mur1 LINE L1 3906 4202 -1684 2 1212 380 152 0 15 chr9 82191221 82191288 -41884884 + L1_Mm LINE L1 4292 4357 -1526 2 1212 657 220 47 64 chr9 82191290 82191523 -41884649 - MYSERV-int LTR ERVK -1022 5528 5300 2 1212 1006 279 78 16 chr9 82192421 82192727 -41883445 - MTE2a LTR MaLR -36 343 19 2 1212 3301 35 0 7 chr9 82192904 82193311 -41882861 + L1Md_F3 LINE L1 6179 6582 -2 2 1212 215 412 8 16 chr9 82193489 82193610 -41882562 + MIR3 SINE MIR 83 202 -6 2 1212 1874 113 6 88 chr9 82194082 82194413 -41881759 + L1_Mus3 LINE L1 6329 6632 -6 2 1212 246 392 8 24 chr9 82194697 82194820 -41881352 + B4 SINE B4 85 205 -87 2 1212 183 80 0 0 chr9 82194903 82194928 -41881244 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1212 1618 151 50 101 chr9 82195637 82195683 -41880489 - ORR1C1 LTR MaLR 0 378 329 2 1212 1494 67 10 0 chr9 82195683 82195891 -41880281 + L1_Mus2 LINE L1 6357 6566 0 2 1212 1618 151 50 101 chr9 82195891 82196040 -41880132 - ORR1C1 LTR MaLR -50 328 178 2 1212 471 18 0 0 chr9 82196040 82196096 -41880076 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 2 1212 1618 151 50 101 chr9 82196096 82196297 -41879875 - ORR1C1 LTR MaLR -201 177 1 2 1212 399 21 0 0 chr9 82196781 82196829 -41879343 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2 1212 23 0 0 0 chr9 82197649 82197672 -41878500 + AT_rich Low_complexity Low_complexity 1 23 0 2 1212 230 234 51 13 chr9 82197685 82197763 -41878409 - Lx3B LINE L1 -43 6930 6850 2 1212 631 212 131 108 chr9 82198461 82198683 -41877489 - ORR1D1 LTR MaLR 0 374 148 2 1212 363 236 0 0 chr9 82198695 82198835 -41877337 + GA-rich Low_complexity Low_complexity 2 141 0 2 1212 647 282 0 49 chr9 82198835 82198999 -41877173 - ORR1D1 LTR MaLR -188 186 31 2 1212 510 17 0 0 chr9 82199598 82199657 -41876515 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1212 343 363 15 0 chr9 82200042 82200177 -41875995 + B1F SINE Alu 3 139 -10 2 1212 591 15 0 0 chr9 82201024 82201092 -41875080 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1212 1256 259 139 42 chr9 82201092 82201188 -41874984 - Lx6 LINE L1 -39 7421 7317 2 1212 246 128 0 0 chr9 82201188 82201227 -41874945 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2 1212 1256 264 109 34 chr9 82201227 82201655 -41874517 - Lx6 LINE L1 -144 7316 6486 2 1212 345 102 0 0 chr9 82202060 82202119 -41874053 + (T)n Simple_repeat Simple_repeat 1 59 0 2 1212 1205 61 0 0 chr9 82202119 82202266 -41873906 - B1_Mm SINE Alu 0 147 1 2 1212 232 326 21 0 chr9 82202439 82202534 -41873638 - MTE2b LTR MaLR -282 97 1 2 1212 453 283 40 78 chr9 82202557 82203080 -41873092 + L1MA4 LINE L1 5515 6010 -290 2 1212 4534 208 102 7 chr9 82203461 82204559 -41871613 - ORR1B1-int LTR MaLR -307 1202 1 2 1212 1706 190 66 21 chr9 82204559 82204936 -41871236 - ORR1B1 LTR MaLR 0 394 1 2 1212 888 126 0 0 chr9 82204936 82205071 -41871101 - URR1A DNA MER1_type -22 204 70 2 1212 1144 213 19 31 chr9 82205068 82205325 -41870847 - ORR1B1-int LTR MaLR -1155 354 101 2 1212 306 208 27 14 chr9 82205851 82205924 -41870248 + MTD LTR MaLR 3 76 -343 2 1212 1294 46 17 0 chr9 82205924 82206097 -41870075 + L1Md_F2 LINE L1 6404 6579 -3 2 1212 302 256 69 76 chr9 82206097 82206154 -41870018 + MTD LTR MaLR 77 132 -289 2 1212 1017 259 78 11 chr9 82206195 82206476 -41869696 + MTD LTR MaLR 120 419 0 2 1212 215 125 29 72 chr9 82206590 82206659 -41869513 + T-rich Low_complexity Low_complexity 3 68 0 3 1212 415 340 31 0 chr9 82206660 82206804 -41869368 - B1F SINE Alu -1 148 1 3 1212 1826 288 50 10 chr9 82207253 82207748 -41868424 + Lx5 LINE L1 6518 7032 -18 3 1212 195 100 0 0 chr9 82207748 82207778 -41868394 + (CTAA)n Simple_repeat Simple_repeat 3 32 0 3 1212 414 229 19 94 chr9 82207928 82208034 -41868138 - B1_Mur1 SINE Alu -6 143 46 3 1212 573 105 0 0 chr9 82208403 82208489 -41867683 + (CCTG)n Simple_repeat Simple_repeat 1 86 0 3 1212 230 114 0 0 chr9 82208554 82208589 -41867583 + MurSatRep1 Unknown Unknown 227 261 -1876 3 1212 22 80 0 0 chr9 82208806 82208856 -41867316 + AT_rich Low_complexity Low_complexity 1 50 0 3 1212 21 0 0 0 chr9 82209711 82209732 -41866440 + AT_rich Low_complexity Low_complexity 1 21 0 3 1212 1439 54 16 0 chr9 82209845 82210031 -41866141 - B2_Mm1t SINE B2 -2 191 3 3 1212 554 208 0 6 chr9 82210045 82210205 -41865967 + (TA)n Simple_repeat Simple_repeat 2 160 0 3 1212 300 337 102 0 chr9 82210220 82210236 -41865936 - PB1D10 SINE Alu -12 108 46 3 1212 309 315 0 0 chr9 82210236 82210309 -41865863 - ID_B1 SINE B4 -61 163 91 3 1212 228 67 0 0 chr9 82210392 82210422 -41865750 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1212 1536 280 12 21 chr9 82210422 82210845 -41865327 - Lx6 LINE L1 -29 7431 7013 3 1212 21 36 0 0 chr9 82210945 82210973 -41865199 + AT_rich Low_complexity Low_complexity 1 28 0 3 1212 276 172 0 0 chr9 82211157 82211215 -41864957 + (CATA)n Simple_repeat Simple_repeat 2 59 0 3 1212 518 348 169 29 chr9 82211241 82211996 -41864176 + L2 LINE L2 1833 2693 -726 3 1212 1534 256 70 112 chr9 82214259 82214682 -41861490 + L1_Mur3 LINE L1 3303 3695 -2185 3 1212 4844 112 8 1 chr9 82214682 82215419 -41860753 + L1_Mus3 LINE L1 5893 6634 -4 3 1212 1534 256 70 112 chr9 82215419 82215936 -41860236 + L1_Mur3 LINE L1 3696 4204 -1676 3 1212 243 200 141 14 chr9 82216006 82216077 -41860095 + L1M3 LINE L1 4363 4442 -1698 3 1212 8543 115 50 6 chr9 82216093 82217522 -41858650 + Lx3A LINE L1 5497 6975 -6 3 1212 1381 337 10 4 chr9 82217600 82218092 -41858080 + Lx8 LINE L1 6477 6971 -502 3 1212 30 27 0 0 chr9 82218109 82218146 -41858026 + AT_rich Low_complexity Low_complexity 1 37 0 3 1212 444 77 0 0 chr9 82218162 82218227 -41857945 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1212 377 329 14 56 chr9 82218234 82218450 -41857722 + Lx8 LINE L1 6982 7188 -285 3 1212 331 265 181 13 chr9 82218452 82218601 -41857571 - L1M2 LINE L1 -691 5612 5439 3 1212 517 253 139 18 chr9 82218673 82218751 -41857421 - L1M2 LINE L1 -782 5361 5280 3 1212 333 0 0 0 chr9 82218751 82218788 -41857384 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1212 517 253 139 18 chr9 82218788 82218983 -41857189 - L1M2 LINE L1 -864 5279 5056 3 1212 510 248 0 0 chr9 82219181 82219286 -41856886 - B1F SINE Alu -1 148 44 3 1212 381 336 7 14 chr9 82219314 82219462 -41856710 - B1F1 SINE Alu 0 149 3 3 1212 1720 145 13 25 chr9 82220519 82220837 -41855335 - Lx4B LINE L1 -1046 4831 4518 3 1212 4668 164 5 169 chr9 82220816 82221495 -41854677 + Lx4B LINE L1 4818 5288 -589 3 1212 9028 4 0 0 chr9 82221495 82222490 -41853682 + L1Md_A LINE L1 5587 6581 -1 3 1212 6431 176 22 3 chr9 82222490 82224120 -41852052 + Lx4B LINE L1 5288 6973 -3 3 1212 221 362 126 42 chr9 82226439 82226701 -41849471 + L2 LINE L2 2289 2572 -847 3 1212 288 310 11 0 chr9 82227407 82227494 -41848678 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 1212 22 0 0 0 chr9 82227561 82227583 -41848589 + AT_rich Low_complexity Low_complexity 1 22 0 3 1212 282 206 0 0 chr9 82227938 82228001 -41848171 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1212 567 0 0 0 chr9 82228789 82228852 -41847320 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1212 22 0 0 0 chr9 82229290 82229312 -41846860 + AT_rich Low_complexity Low_complexity 1 22 0 3 1212 207 0 0 0 chr9 82229325 82229348 -41846824 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1212 454 171 0 0 chr9 82229486 82229568 -41846604 + Lx2B LINE L1 6577 6658 -342 3 1212 503 299 32 23 chr9 82229639 82229919 -41846253 + L1MA6 LINE L1 5600 5881 -416 3 1212 840 117 32 7 chr9 82230171 82230326 -41845846 + Lx3A LINE L1 6028 6186 -823 3 1212 22 0 0 0 chr9 82230397 82230419 -41845753 + AT_rich Low_complexity Low_complexity 1 22 0 3 1212 5598 93 19 8 chr9 82230788 82231585 -41844587 + Lx3A LINE L1 6165 6970 -11 3 1212 470 234 37 18 chr9 82231763 82231904 -41844268 - B3 SINE B2 0 216 2 3 1212 305 207 103 0 chr9 82231950 82232037 -41844135 - MER5A1 DNA MER1_type -38 128 33 3 1212 192 356 89 0 chr9 82235037 82235127 -41841045 + L2c LINE L2 3274 3371 -16 3 1212 247 25 50 0 chr9 82235533 82235573 -41840599 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 1212 1191 68 0 0 chr9 82235581 82235729 -41840443 - B1_Mus1 SINE Alu 0 148 1 3 1212 26 0 0 0 chr9 82236237 82236263 -41839909 + AT_rich Low_complexity Low_complexity 1 26 0 3 1212 357 167 121 0 chr9 82236446 82236512 -41839660 + ID_B1 SINE B4 132 205 -19 3 1212 384 119 0 0 chr9 82236578 82236637 -41839535 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1212 296 281 33 11 chr9 82236642 82236732 -41839440 + PB1 SINE Alu 29 120 -7 3 1212 213 189 0 0 chr9 82237109 82237146 -41839026 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1212 454 222 111 0 chr9 82238087 82238249 -41837923 - L1MA6 LINE L1 -24 6276 6097 3 1212 21 57 0 0 chr9 82238543 82238578 -41837594 + AT_rich Low_complexity Low_complexity 1 35 0 3 1212 942 173 103 16 chr9 82238613 82238807 -41837365 + B3 SINE B2 1 211 -5 3 1212 865 314 76 3 chr9 82239103 82239419 -41836753 + L3 LINE CR1 3318 3656 -833 3 1212 6468 115 19 8 chr9 82241788 82242761 -41833411 - RLTR13C1 LTR ERVK 0 983 1 3 1212 3725 149 93 3 chr9 82244153 82244481 -41831691 - RMER6D LTR ERVK 0 720 375 3 1212 1211 61 6 0 chr9 82244481 82244646 -41831526 + (TC)n Simple_repeat Simple_repeat 1 166 0 3 1212 3725 149 93 3 chr9 82244646 82244975 -41831197 - RMER6D LTR ERVK -346 374 6 3 1212 1329 305 40 13 chr9 82245272 82245826 -41830346 + Lx9 LINE L1 6592 7160 -484 3 1212 345 82 0 0 chr9 82245837 82245886 -41830286 + (T)n Simple_repeat Simple_repeat 1 49 0 3 1212 36230 30 1 0 chr9 82245893 82252527 -41823645 - L1Md_T LINE L1 -3 6582 1 3 1212 219 125 0 0 chr9 82252554 82252594 -41823578 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1212 230 73 0 24 chr9 82254853 82254895 -41821277 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1212 218 358 106 34 chr9 82255195 82255403 -41820769 - MIRb SINE MIR -8 260 38 3 1212 2094 157 105 29 chr9 82255403 82255994 -41820178 - RMER6A LTR ERVK 0 756 1 3 1212 462 361 58 15 chr9 82256303 82256508 -41819664 - Tigger5 DNA MER2_type -2191 215 2 3 1212 22 0 0 0 chr9 82256624 82256646 -41819526 + AT_rich Low_complexity Low_complexity 1 22 0 3 1212 571 296 23 56 chr9 82257213 82257428 -41818744 - RMER15 LTR ERVL -16 559 352 3 1212 401 331 25 25 chr9 82258017 82258175 -41817997 + Tigger5 DNA MER2_type 149 306 -2100 3 1212 377 363 0 0 chr9 82258205 82258329 -41817843 + Tigger5 DNA MER2_type 2260 2383 -23 3 1212 627 86 7 0 chr9 82258949 82259042 -41817130 - Lx3_Mus LINE L1 -403 5759 5631 3 1212 6859 121 32 11 chr9 82259042 82260151 -41816021 + Lx3_Mus LINE L1 5865 6997 -12 3 1212 475 180 9 9 chr9 82260151 82260263 -41815909 + GA-rich Low_complexity Low_complexity 2 113 0 3 1212 18737 49 10 1 chr9 82260450 82262921 -41813251 + L1Md_F2 LINE L1 3093 5586 -297 3 1212 7987 48 1 3 chr9 82262921 82263968 -41812204 + L1Md_F2 LINE L1 5587 6582 0 3 1212 330 91 0 0 chr9 82264083 82264138 -41812034 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 3 1212 348 83 0 0 chr9 82264140 82264188 -41811984 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1212 507 60 0 0 chr9 82264188 82264254 -41811918 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1212 203 368 46 39 chr9 82264381 82264511 -41811661 + MIRb SINE MIR 66 196 -72 3 1212 5053 18 0 0 chr9 82264658 82265268 -41810904 + L1Md_T LINE L1 4977 5586 -297 3 1212 8024 56 0 0 chr9 82265268 82266296 -41809876 + L1Md_T LINE L1 5587 6582 0 3 1212 315 0 0 0 chr9 82266384 82266419 -41809753 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1212 535 301 62 19 chr9 82267716 82267926 -41808246 - RMER20B LTR ERVK -270 357 139 3 1212 1450 50 0 0 chr9 82268006 82268187 -41807985 - L1_Mus1 LINE L1 0 6567 6387 3 1212 1933 131 45 26 chr9 82268297 82268649 -41807523 + RLTR15 LTR ERVK 1 359 0 3 1212 326 151 0 14 chr9 82268895 82268969 -41807203 + CT-rich Low_complexity Low_complexity 4 76 0 3 1212 261 128 0 0 chr9 82268976 82269023 -41807149 + (TGG)n Simple_repeat Simple_repeat 3 49 0 3 1212 452 62 16 0 chr9 82269025 82269089 -41807083 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1212 1921 245 22 5 chr9 82269196 82269598 -41806574 + MTD LTR MaLR 3 411 -8 3 1212 1714 217 72 17 chr9 82269604 82270008 -41806164 + MTD-int LTR MaLR 2 427 -831 3 1212 1351 216 33 7 chr9 82270005 82270275 -41805897 + MTD LTR MaLR 143 419 0 3 1212 189 187 39 26 chr9 82270615 82270669 -41805503 + (TCTCTG)n Simple_repeat Simple_repeat 1 57 0 3 1212 210 91 0 0 chr9 82270669 82270702 -41805470 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 3 1212 189 187 39 26 chr9 82270702 82270724 -41805448 + (TCTCTG)n Simple_repeat Simple_repeat 5 24 0 3 1212 756 107 0 0 chr9 82270727 82270848 -41805324 + (TCTCCC)n Simple_repeat Simple_repeat 4 124 0 3 1212 831 155 200 41 chr9 82272013 82272208 -41803964 - URR1A DNA MER1_type 0 226 1 3 1212 302 248 7 57 chr9 82272232 82272373 -41803799 + T-rich Low_complexity Low_complexity 3 136 0 3 1212 387 0 0 0 chr9 82272386 82272429 -41803743 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1212 29821 119 36 4 chr9 82273225 82274947 -41801225 + L1Md_F2 LINE L1 204 1958 -3925 3 1212 186 43 0 0 chr9 82274947 82274970 -41801202 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1212 12851 79 1 3 chr9 82276665 82278409 -41797763 + L1Md_F2 LINE L1 3847 5586 -297 3 1212 7238 75 19 1 chr9 82278409 82279377 -41796795 + L1Md_F2 LINE L1 5587 6571 -11 3 1212 1511 45 29 10 chr9 82280429 82280633 -41795539 + L1Md_F3 LINE L1 6377 6584 0 3 1212 4274 108 18 18 chr9 82282422 82283093 -41793079 + Lx3A LINE L1 6308 6978 -3 3 1212 213 39 0 0 chr9 82283447 82283473 -41792699 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1212 1749 202 26 54 chr9 82283823 82284211 -41791961 - ORR1C1 LTR MaLR 0 378 2 3 1212 286 302 74 0 chr9 82284438 82284567 -41791605 - MLT1F-int LTR MaLR -563 926 793 4 1212 411 277 86 21 chr9 82284724 82284864 -41791308 + B1_Mur1 SINE Alu 1 149 0 4 1212 766 327 98 16 chr9 82285212 82285529 -41790643 - MLT1F LTR MaLR -89 459 117 4 1212 1043 246 218 3 chr9 82286282 82286435 -41789737 - MTD LTR MaLR -12 407 188 4 1212 789 92 0 47 chr9 82286435 82286583 -41789589 - L1_Mus3 LINE L1 0 6638 6498 4 1212 1043 246 218 3 chr9 82286583 82286759 -41789413 - MTD LTR MaLR -232 187 8 4 1212 570 286 99 18 chr9 82286783 82286954 -41789218 + B3 SINE B2 32 216 0 4 1212 473 252 116 46 chr9 82287189 82287405 -41788767 + L1MA6 LINE L1 5764 5994 -306 4 1212 3660 114 6 134 chr9 82287652 82287977 -41788195 - Lx3A LINE L1 -762 6219 5919 4 1212 866 77 0 37 chr9 82287977 82288139 -41788033 + (TTTC)n Simple_repeat Simple_repeat 4 159 0 4 1212 3660 114 6 134 chr9 82288139 82288196 -41787976 - Lx3A LINE L1 -1063 5918 5909 4 1212 1371 62 0 0 chr9 82288196 82288374 -41787798 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 1212 3660 84 8 15 chr9 82288374 82288880 -41787292 - Lx3A LINE L1 -1073 5908 5426 4 1212 5578 82 4 9 chr9 82288880 82289643 -41786529 + Lx3_Mus LINE L1 6251 7009 0 4 1212 22 35 0 0 chr9 82289648 82289677 -41786495 + AT_rich Low_complexity Low_complexity 1 29 0 4 1212 30 0 0 0 chr9 82290002 82290032 -41786140 + AT_rich Low_complexity Low_complexity 1 30 0 4 1212 4522 201 64 21 chr9 82291368 82292238 -41783934 + Lx5 LINE L1 6024 6931 -119 4 1212 2495 36 0 208 chr9 82292238 82292699 -41783473 - RLTR10B2 LTR ERVK 0 365 1 4 1212 4522 201 64 21 chr9 82292699 82292810 -41783362 + Lx5 LINE L1 6932 7047 -3 4 1212 2488 188 147 4 chr9 82293385 82293909 -41782263 + RMER19C LTR ERVK 1 599 -12 4 1212 277 341 33 0 chr9 82294016 82294107 -41782065 - PB1D10 SINE Alu -9 108 15 4 1212 425 324 118 0 chr9 82295124 82295260 -41780912 - RSINE1 SINE B4 -12 153 2 4 1212 376 325 27 140 chr9 82295277 82295499 -41780673 - MLT1D LTR MaLR -191 314 118 4 1212 546 16 0 0 chr9 82295826 82295889 -41780283 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1212 1876 160 50 6 chr9 82295985 82296343 -41779829 - ORR1D1 LTR MaLR 0 374 1 4 1212 243 300 0 0 chr9 82296981 82297051 -41779121 + GA-rich Low_complexity Low_complexity 2 71 0 4 1212 555 29 0 0 chr9 82297315 82297384 -41778788 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1212 22 56 0 0 chr9 82297661 82297697 -41778475 + AT_rich Low_complexity Low_complexity 1 36 0 4 1212 467 259 73 63 chr9 82297753 82298197 -41777975 + L1Md_F LINE L1 281 741 -5778 4 1212 613 75 0 0 chr9 82298210 82298303 -41777869 + MusHAL1 LINE L1 687 779 -2575 4 1212 11888 109 2 15 chr9 82298301 82300414 -41775758 - L1_Mus3 LINE L1 -472 6166 4084 4 1212 3201 228 26 9 chr9 82300412 82301170 -41775002 - L1VL4 LINE L1 -5324 978 208 4 1212 1091 217 129 7 chr9 82301242 82301520 -41774652 - L1_Mur3 LINE L1 -6567 1145 834 4 1212 278 295 30 59 chr9 82301934 82302035 -41774137 + PB1D10 SINE Alu 17 114 -3 4 1212 305 272 64 21 chr9 82302351 82302445 -41773727 - RMER10A LTR ERVL -27 415 318 4 1212 249 234 0 0 chr9 82302649 82302713 -41773459 + GA-rich Low_complexity Low_complexity 1 64 0 4 1212 234 0 0 0 chr9 82303000 82303026 -41773146 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 1212 986 296 45 75 chr9 82304165 82304521 -41771651 - L1MA5A LINE L1 -1553 5920 5608 4 1212 531 78 0 0 chr9 82304521 82304598 -41771574 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 4 1212 986 289 45 79 chr9 82304598 82304819 -41771353 - L1MA5A LINE L1 -690 5607 5409 4 1212 2275 178 10 5 chr9 82304819 82305237 -41770935 + MTC LTR MaLR 1 420 -1 4 1212 986 295 54 82 chr9 82305237 82305536 -41770636 - L1MA5A LINE L1 -889 5408 5022 4 1212 1229 302 40 8 chr9 82305617 82305971 -41770201 + MTE2b LTR MaLR 7 371 -8 4 1212 416 275 90 62 chr9 82305972 82306216 -41769956 + L1ME1 LINE L1 5559 5809 -370 4 1212 292 214 49 0 chr9 82306260 82306341 -41769831 + L1MA5A LINE L1 6179 6259 -41 4 1212 284 303 51 60 chr9 82306444 82306679 -41769493 + L1ME1 LINE L1 5858 6090 -89 4 1212 510 17 0 0 chr9 82308261 82308320 -41767852 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 4 1212 429 104 0 0 chr9 82308389 82308466 -41767706 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1212 342 0 0 0 chr9 82308643 82308681 -41767491 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1212 415 336 26 17 chr9 82308682 82308797 -41767375 - RSINE1 SINE B4 -22 143 28 4 1212 1450 240 59 12 chr9 82308825 82309162 -41767010 + MTD LTR MaLR 53 405 -14 4 1212 360 240 0 26 chr9 82311194 82311271 -41764901 + RLTR18B LTR ERVK 1 75 -541 4 1212 592 84 0 31 chr9 82311273 82311371 -41764801 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 4 1212 869 293 82 18 chr9 82311552 82311882 -41764290 + RLTR18B LTR ERVK 158 508 -4 4 1212 802 261 8 48 chr9 82312109 82312359 -41763813 + L1_Rod LINE L1 908 1147 -6461 4 1212 2671 181 22 67 chr9 82312354 82312934 -41763238 + Lx2B LINE L1 6398 6951 -49 4 1212 181 0 0 65 chr9 82312950 82312981 -41763191 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 4 151 610 262 73 18 chr9 82312992 82313267 -41762905 + L1_Rod LINE L1 1161 1449 -4398 4 1213 3481 279 54 69 chr9 82313252 82315419 -41760753 + L1_Rod LINE L1 1752 3886 -1961 4 1213 1516 257 16 29 chr9 82315420 82315880 -41760292 + Lx6 LINE L1 5748 6234 -1226 4 1213 1655 47 0 9 chr9 82315895 82316101 -41760071 - L1Md_F2 LINE L1 -505 6077 5873 4 1213 3390 56 65 5 chr9 82316101 82316548 -41759624 + L1Md_F2 LINE L1 6098 6571 -11 4 1213 4047 249 59 6 chr9 82316548 82317497 -41758675 + Lx6 LINE L1 6285 7283 -177 4 1213 3460 267 75 83 chr9 82317632 82318111 -41758061 + L1_Rod LINE L1 3905 4400 -1447 4 1213 180 0 0 0 chr9 82318111 82318131 -41758041 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1213 3460 267 75 83 chr9 82318131 82319439 -41756733 + L1_Rod LINE L1 4401 5679 -168 4 1213 247 295 0 32 chr9 82319592 82319655 -41756517 + MER20B DNA MER1_type 91 151 -632 4 1213 21 0 0 0 chr9 82320582 82320603 -41755569 + AT_rich Low_complexity Low_complexity 1 21 0 4 1213 225 336 143 13 chr9 82320923 82321077 -41755095 + MER115 DNA Tip100 487 660 -33 4 1213 647 274 89 0 chr9 82323096 82323242 -41752930 - RSINE1 SINE B4 -4 161 3 4 1213 2581 115 0 22 chr9 82323275 82323683 -41752489 + Lx LINE L1 6252 6650 -4 4 1213 11093 179 115 27 chr9 82324565 82325669 -41750503 + L1_Mur2 LINE L1 892 2056 -3821 4 1213 546 79 0 0 chr9 82325669 82325745 -41750427 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1213 11093 175 47 28 chr9 82325745 82327314 -41748858 + L1_Mur2 LINE L1 2057 3692 -2185 4 1213 873 109 159 0 chr9 82327339 82327477 -41748695 + L1_Mm LINE L1 5458 5617 -266 4 1213 3939 206 39 10 chr9 82327462 82328230 -41747942 + Lx5 LINE L1 6258 7047 -3 4 1213 1505 301 92 23 chr9 82328551 82329432 -41746740 + L1MC1 LINE L1 5262 6203 -130 4 1213 673 154 159 6 chr9 82329461 82329637 -41746535 - Lx9 LINE L1 -6 7638 7436 4 1213 1023 119 0 0 chr9 82330451 82330627 -41745545 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 4 1213 1300 224 141 13 chr9 82331085 82331532 -41744640 - Lx9 LINE L1 0 7644 7141 4 1213 2840 275 74 22 chr9 82331676 82332576 -41743596 - Lx9 LINE L1 -209 7435 6484 4 1213 992 8 8 0 chr9 82332576 82332693 -41743479 + (TCTA)n Simple_repeat Simple_repeat 3 120 0 4 1213 2840 275 74 22 chr9 82332693 82332708 -41743464 - Lx9 LINE L1 -1161 6483 6472 4 1213 693 36 0 0 chr9 82332786 82332870 -41743302 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 4 1213 3103 232 130 43 chr9 82332870 82333808 -41742364 - RLTR25B LTR ERVK -8 1020 1 4 1213 662 34 11 0 chr9 82333808 82333897 -41742275 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 4 1213 681 13 0 0 chr9 82333902 82333980 -41742192 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1213 1179 187 132 94 chr9 82333987 82334382 -41741790 + RMER17C LTR ERVK 1 410 0 4 1213 426 121 0 0 chr9 82334388 82334454 -41741718 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 4 1213 825 340 9 31 chr9 82334623 82335042 -41741130 - Lx8 LINE L1 -97 7376 6967 4 1213 911 285 46 22 chr9 82335051 82335374 -41740798 + Lx8 LINE L1 6622 6952 -521 4 1213 946 224 28 32 chr9 82335396 82335613 -41740559 - B3 SINE B2 0 216 1 4 1213 33211 75 5 13 chr9 82336454 82342675 -41733497 - L1Md_F2 LINE L1 -1 6581 415 4 1213 1097 87 0 0 chr9 82342869 82343018 -41733154 + B2_Mm2 SINE B2 9 157 -38 4 1213 333 0 0 0 chr9 82343018 82343055 -41733117 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 1213 439 251 78 49 chr9 82343133 82343338 -41732834 - L1MB7 LINE L1 0 6184 5974 4 1213 1627 213 205 28 chr9 82343586 82344088 -41732084 - RMER19B LTR ERVK -2 900 310 4 1213 327 280 11 0 chr9 82344110 82344203 -41731969 - Lx8 LINE L1 -152 7321 7228 4 1213 3435 78 117 0 chr9 82344206 82344801 -41731371 - L1_Mus3 LINE L1 -600 6038 5374 4 1213 615 88 0 0 chr9 82344794 82344874 -41731298 + L1_Mus3 LINE L1 6036 6115 -523 4 1213 1653 88 32 4 chr9 82344874 82345125 -41731047 + L1_Mus3 LINE L1 6379 6636 -2 4 1213 432 260 10 0 chr9 82345153 82345249 -41730923 - Lx8 LINE L1 -287 7186 7090 4 1213 1194 52 0 0 chr9 82345254 82345408 -41730764 - L1Md_F2 LINE L1 -2 6580 6427 4 1213 278 321 120 15 chr9 82345420 82345553 -41730619 + LTR48 LTR ERV1 11 157 -630 4 1213 240 111 0 0 chr9 82345557 82345602 -41730570 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 4 1213 325 262 92 18 chr9 82346984 82347093 -41729079 + PB1D10 SINE Alu 1 117 0 4 1213 8902 112 8 3 chr9 82347835 82350061 -41726111 - L1_Mus3 LINE L1 0 6638 4403 4 1213 6751 137 32 16 chr9 82350055 82351296 -41724876 + L1_Mus3 LINE L1 3176 4442 -1441 4 1213 2136 45 26 0 chr9 82351296 82351564 -41724608 + L1Md_F3 LINE L1 6296 6570 -14 4 1213 6751 137 32 16 chr9 82351564 82351592 -41724580 + L1_Mm LINE L1 4443 4466 -1417 4 1213 1269 204 128 27 chr9 82351631 82351959 -41724213 - ORR1D1 LTR MaLR -9 365 5 4 1213 1972 283 18 2 chr9 82352362 82352928 -41723244 - Lx8 LINE L1 -677 6796 6222 4 1213 1505 248 36 8 chr9 82353025 82353387 -41722785 + ORR1D1 LTR MaLR 3 374 0 4 1213 452 340 14 7 chr9 82353885 82354163 -41722009 - Lx7 LINE L1 -485 5806 5524 4 1213 297 184 81 72 chr9 82354281 82354392 -41721780 - L1MA6 LINE L1 -69 6231 6120 4 1213 4016 159 15 3 chr9 82354434 82355176 -41720996 + L1_Mur2 LINE L1 4809 5559 -318 4 1213 3449 210 38 4 chr9 82355173 82355919 -41720253 + Lx5 LINE L1 6272 7042 -8 4 1213 934 241 59 4 chr9 82355941 82356212 -41719960 - Lx6 LINE L1 -29 7431 7146 4 1213 425 161 8 41 chr9 82356221 82356344 -41719828 + C-rich Low_complexity Low_complexity 4 122 0 4 1213 1143 186 180 19 chr9 82356357 82356453 -41719719 - Lx6 LINE L1 -573 6887 6772 4 1213 213 0 0 75 chr9 82356453 82356493 -41719679 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1213 1143 186 180 19 chr9 82356493 82356719 -41719453 - Lx6 LINE L1 -689 6771 6513 4 1213 756 269 37 0 chr9 82356746 82356962 -41719210 - Lx6 LINE L1 -1089 6371 6148 4 1213 383 196 103 0 chr9 82356962 82357059 -41719113 - U6 snRNA snRNA 0 107 1 4 1213 359 355 74 0 chr9 82358276 82358397 -41717775 - B1F SINE Alu -8 141 12 4 1213 485 287 84 118 chr9 82358881 82359296 -41716876 + RLTR23 LTR ERV1 8 408 -22 4 1213 5075 119 37 0 chr9 82359735 82361036 -41715136 + L1Md_F LINE L1 305 1661 -4222 4 1213 551 181 0 11 chr9 82361036 82361131 -41715041 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 4 1213 225 0 0 0 chr9 82361157 82361182 -41714990 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1213 27 0 0 0 chr9 82361379 82361406 -41714766 + AT_rich Low_complexity Low_complexity 1 27 0 5 1213 511 304 30 6 chr9 82361536 82361705 -41714467 + Lx8 LINE L1 7049 7221 -252 5 1213 234 350 88 11 chr9 82361763 82361945 -41714227 + Lx8 LINE L1 7216 7411 -62 5 1213 309 109 0 0 chr9 82362572 82362618 -41713554 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1213 304 303 118 56 chr9 82362620 82362781 -41713391 - MLT1A0 LTR MaLR -10 355 185 5 1213 495 0 0 0 chr9 82362801 82362856 -41713316 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1213 36278 30 1 0 chr9 82363481 82370191 -41705981 - L1Md_T LINE L1 0 6585 1 5 1213 447 321 55 20 chr9 82370471 82370671 -41705501 + Lx8 LINE L1 7108 7314 -159 5 1213 249 108 0 0 chr9 82370808 82370845 -41705327 + (TATG)n Simple_repeat Simple_repeat 1 37 0 5 1213 3222 250 27 32 chr9 82371502 82372398 -41703774 + Lx7 LINE L1 6437 7327 -369 5 1213 3644 120 107 35 chr9 82372402 82373086 -41703086 + Lx4A LINE L1 6326 7058 0 5 1213 1406 192 33 21 chr9 82373193 82373528 -41702644 + Lx7 LINE L1 7358 7696 0 5 1213 6990 70 7 0 chr9 82373547 82374492 -41701680 - L1_Mus1 LINE L1 -1 6566 5615 5 1213 249 274 116 0 chr9 82374492 82374587 -41701585 - MER33 DNA MER1_type -180 144 39 5 1213 387 0 0 0 chr9 82375437 82375480 -41700692 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1213 1504 240 92 15 chr9 82376316 82376718 -41699454 - RMER15 LTR ERVL 0 575 143 5 1213 2056 127 15 26 chr9 82376981 82377320 -41698852 + Lx3B LINE L1 6637 6971 -2 5 1213 205 138 0 0 chr9 82377326 82377355 -41698817 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1213 1771 189 74 26 chr9 82377434 82377853 -41698319 + RMER17B LTR ERVK 1 439 -519 5 1213 2328 215 61 33 chr9 82377872 82378483 -41697689 + RMER13B LTR ERVK 272 899 -9 5 1213 27 29 0 0 chr9 82379175 82379209 -41696963 + AT_rich Low_complexity Low_complexity 1 34 0 5 1213 763 245 52 5 chr9 82380029 82380222 -41695950 + B3 SINE B2 1 202 -14 5 1213 580 239 135 41 chr9 82380999 82381243 -41694929 - Lx8 LINE L1 -31 7442 7176 5 1213 643 226 123 38 chr9 82381244 82381391 -41694781 - Lx8 LINE L1 -976 6497 6346 5 1213 2815 145 145 32 chr9 82381391 82382011 -41694161 - RMER6C LTR ERVK 0 690 1 5 1213 643 226 123 38 chr9 82382011 82382098 -41694074 - Lx8 LINE L1 -1128 6345 6243 5 1213 235 215 15 0 chr9 82382152 82382217 -41693955 - Lx9 LINE L1 -9 7635 7570 5 1213 245 215 61 37 chr9 82382234 82382316 -41693856 + Lx9 LINE L1 5851 5934 -1710 5 1213 346 277 158 23 chr9 82382341 82382644 -41693528 + Lx9 LINE L1 6032 6375 -1269 5 1213 1100 191 82 9 chr9 82382644 82382876 -41693296 - RLTR33 LTR ERVK -429 249 1 5 1213 5443 65 1 3 chr9 82383226 82383965 -41692207 + L1Md_F2 LINE L1 4849 5586 -297 5 1213 7951 51 7 2 chr9 82383966 82384956 -41691216 + L1Md_F2 LINE L1 5588 6582 0 5 1213 294 149 0 21 chr9 82385090 82385138 -41691034 - Lx4B LINE L1 -338 6720 6674 5 1213 975 203 191 55 chr9 82385134 82385463 -41690709 + Lx5 LINE L1 6674 7047 -3 5 1213 353 287 104 29 chr9 82385848 82386128 -41690044 - L1M4 LINE L1 -439 5745 5445 5 1213 267 277 96 29 chr9 82386512 82386616 -41689556 + PB1D10 SINE Alu 1 111 -6 5 1213 21 57 0 0 chr9 82387160 82387195 -41688977 + AT_rich Low_complexity Low_complexity 1 35 0 5 1213 357 185 0 0 chr9 82387227 82387292 -41688880 - L1_Mur2 LINE L1 -356 5521 5457 5 1213 266 125 21 0 chr9 82387435 82387483 -41688689 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 5 1213 6446 69 0 1 chr9 82387484 82388307 -41687865 - L1_Mus1 LINE L1 -6 6561 5740 5 1213 1805 120 0 14 chr9 82388309 82388589 -41687583 + L1_Mm LINE L1 5507 5782 -101 5 1213 3150 145 53 94 chr9 82388556 82388635 -41687537 - L1_Mur2 LINE L1 -513 5364 5288 5 1213 3799 43 2 0 chr9 82388635 82389098 -41687074 - L1Md_F3 LINE L1 0 6584 6121 5 1213 3150 145 53 94 chr9 82389098 82389807 -41686365 - L1_Mur2 LINE L1 -590 5287 4608 5 1213 3634 217 94 13 chr9 82389805 82390779 -41685393 + Lx2B LINE L1 5857 7002 -56 5 1213 216 131 31 62 chr9 82390784 82390849 -41685323 + A-rich Low_complexity Low_complexity 3 65 0 5 1213 1663 191 22 19 chr9 82391158 82391526 -41684646 - Lx5 LINE L1 -606 6444 6076 5 1213 2582 161 6 45 chr9 82391537 82392164 -41684008 + Lx5 LINE L1 5456 6069 -981 5 1213 25 51 0 0 chr9 82393061 82393100 -41683072 + AT_rich Low_complexity Low_complexity 1 39 0 5 1213 1057 223 103 62 chr9 82393479 82393837 -41682335 + ORR1D1 LTR MaLR 1 373 -1 5 1213 3333 171 9 55 chr9 82393837 82394071 -41682101 - L1_Mur2 LINE L1 -2678 3199 3001 5 1213 1215 54 7 0 chr9 82394071 82394218 -41681954 - B1_Mus1 SINE Alu 0 148 1 5 1213 3333 171 9 55 chr9 82394218 82394758 -41681414 - L1_Mur2 LINE L1 -2877 3000 2461 5 1213 6131 167 55 11 chr9 82394755 82396490 -41679682 + Lx4B LINE L1 5169 6971 -29 5 1213 504 0 0 0 chr9 82396490 82396546 -41679626 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1213 22 0 0 0 chr9 82397107 82397129 -41679043 + AT_rich Low_complexity Low_complexity 1 22 0 5 1213 273 265 84 47 chr9 82398607 82398714 -41677458 + ORR1C2 LTR MaLR 74 184 -200 5 1213 227 31 0 30 chr9 82399716 82399749 -41676423 + (TAA)n Simple_repeat Simple_repeat 3 34 0 5 1213 294 192 35 14 chr9 82399838 82399935 -41676237 + L1MA4 LINE L1 5869 5970 -333 5 1213 874 325 132 22 chr9 82400381 82400888 -41675284 - MLT1A0-int LTR MaLR -790 581 19 5 1213 356 321 100 11 chr9 82400923 82401158 -41675014 - MLT1A0 LTR MaLR -38 327 1 5 1213 253 306 37 0 chr9 82401260 82401368 -41674804 + L1MA8 LINE L1 6031 6142 -149 5 1213 231 219 263 6 chr9 82401533 82401689 -41674483 - Lx8 LINE L1 -9 7464 7269 5 1213 282 311 70 22 chr9 82401735 82402008 -41674164 + L1M5 LINE L1 3703 3988 -2158 5 1213 1982 155 85 6 chr9 82402197 82402561 -41673611 + ORR1B1 LTR MaLR 1 393 -1 5 1213 1756 264 121 35 chr9 82404399 82404690 -41671482 - Lx5 LINE L1 -637 6413 6131 5 1213 585 0 0 0 chr9 82404690 82404755 -41671417 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 1213 1756 264 121 35 chr9 82404755 82405225 -41670947 - Lx5 LINE L1 -920 6130 5588 5 1213 1947 265 176 12 chr9 82405248 82405897 -41670275 + Lx6 LINE L1 6643 7397 -63 5 1213 7199 42 4 0 chr9 82406674 82407594 -41668578 - L1Md_F2 LINE L1 -1 6581 5658 5 1213 2983 21 0 0 chr9 82407671 82408011 -41668161 + L1Md_F2 LINE L1 6229 6568 -14 5 1213 304 312 121 43 chr9 82408018 82408249 -41667923 - MamRep605 Unknown Unknown -160 716 468 5 1213 592 327 84 18 chr9 82408337 82408623 -41667549 - MamRep605 Unknown Unknown -557 319 15 5 1213 711 121 0 0 chr9 82409334 82409458 -41666714 + Lx3_Mus LINE L1 6886 7009 0 5 1213 581 341 34 0 chr9 82410008 82410184 -41665988 + B3A SINE B2 1 182 -16 5 1213 537 153 24 0 chr9 82410185 82410309 -41665863 + (CA)n Simple_repeat Simple_repeat 2 128 0 5 1213 473 265 26 0 chr9 82410425 82410542 -41665630 + RSINE1 SINE B4 45 164 -1 5 1213 1204 41 0 14 chr9 82411670 82411817 -41664355 + B1_Mus2 SINE Alu 1 145 -2 5 1213 209 388 75 0 chr9 82411851 82411985 -41664187 - MIRb SINE MIR -70 198 55 5 1213 513 249 99 41 chr9 82411990 82412162 -41664010 + B3A SINE B2 17 198 0 5 1213 279 165 342 0 chr9 82412777 82412856 -41663316 - Lx4B LINE L1 0 7058 6953 5 1213 21 0 0 0 chr9 82413045 82413066 -41663106 + AT_rich Low_complexity Low_complexity 1 21 0 5 1213 255 31 0 0 chr9 82413123 82413155 -41663017 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1213 763 250 46 0 chr9 82413155 82413351 -41662821 - Lx9 LINE L1 -188 7456 7252 5 1213 248 194 73 15 chr9 82413320 82413388 -41662784 + Lx9 LINE L1 7164 7235 -409 5 1213 25 31 0 0 chr9 82413456 82413488 -41662684 + AT_rich Low_complexity Low_complexity 1 32 0 5 1213 4967 94 43 3 chr9 82413583 82414305 -41661867 - Lx3_Mus LINE L1 -8 7001 6251 5 1213 990 25 0 0 chr9 82414305 82414425 -41661747 + L1_Mur1 LINE L1 5426 5545 -341 5 1213 1743 74 12 0 chr9 82414425 82414669 -41661503 - Lx3_Mus LINE L1 -1096 5913 5667 5 1213 411 291 178 0 chr9 82414725 82414972 -41661200 - Lx7 LINE L1 -335 7361 7071 5 1213 398 258 0 0 chr9 82414972 82415065 -41661107 + Lx7 LINE L1 6985 7077 -619 5 1213 3325 38 5 0 chr9 82416544 82416938 -41659234 + MTA_Mm LTR MaLR 1 396 0 5 1213 3270 139 115 43 chr9 82417110 82417803 -41658369 - RMER6A LTR ERVK -13 743 1 5 1213 549 240 115 6 chr9 82418045 82418258 -41657914 + L1M2 LINE L1 5544 5777 -391 5 1213 586 144 38 17 chr9 82418259 82418498 -41657674 + (TAGA)n Simple_repeat Simple_repeat 1 243 0 5 1213 874 265 95 43 chr9 82419167 82419514 -41656658 + ORR1D2 LTR MaLR 4 368 -2 5 1213 495 0 0 0 chr9 82420258 82420313 -41655859 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1213 1665 247 90 10 chr9 82420710 82420775 -41655397 - MT2A LTR ERVL -4 529 460 5 1213 288 0 0 0 chr9 82420775 82420807 -41655365 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1213 1665 247 90 10 chr9 82420807 82421152 -41655020 - MT2A LTR ERVL -74 459 84 5 1213 238 0 26 51 chr9 82421152 82421191 -41654981 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1213 1665 247 90 10 chr9 82421191 82421269 -41654903 - MT2A LTR ERVL -450 83 3 5 1213 246 337 99 0 chr9 82422588 82422689 -41653483 + L2c LINE L2 3273 3383 -4 5 1213 1020 236 104 0 chr9 82422998 82423316 -41652856 - Lx9 LINE L1 -36 7608 7258 5 1213 393 158 0 0 chr9 82423423 82423524 -41652648 + CT-rich Low_complexity Low_complexity 2 102 0 5 1213 192 135 0 0 chr9 82423563 82423600 -41652572 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1213 500 321 93 61 chr9 82423978 82424257 -41651915 + RMER15 LTR ERVL 238 525 -50 5 1213 371 338 116 7 chr9 82424287 82424400 -41651772 + MTEa LTR MaLR 196 313 -66 5 1213 867 75 0 0 chr9 82424400 82424520 -41651652 + (TTCC)n Simple_repeat Simple_repeat 3 122 0 5 1213 371 338 116 7 chr9 82424520 82424561 -41651611 + MTEa LTR MaLR 314 366 -13 5 1213 263 407 58 17 chr9 82424636 82424876 -41651296 - MER46C DNA MER2_type -9 329 80 5 1213 4920 37 3 2 chr9 82425098 82425692 -41650480 + L1Md_F2 LINE L1 5988 6582 0 5 1213 841 239 24 0 chr9 82425849 82426054 -41650118 + B3 SINE B2 1 210 -6 5 1213 227 348 67 0 chr9 82426174 82426263 -41649909 - MIR3 SINE MIR -5 203 109 5 1213 616 238 122 13 chr9 82426890 82427120 -41649052 - Lx7 LINE L1 -4 7692 7438 5 1213 333 0 0 0 chr9 82427136 82427173 -41648999 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1213 1402 240 49 3 chr9 82427186 82427571 -41648601 - Lx7 LINE L1 -354 7342 6940 5 1213 4429 216 104 38 chr9 82427736 82428609 -41647563 - Lx7 LINE L1 -763 6933 5982 5 1213 288 0 0 0 chr9 82428609 82428641 -41647531 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1213 6759 182 38 16 chr9 82428641 82429768 -41646404 - Lx7 LINE L1 -1715 5981 4850 5 1213 191 32 65 0 chr9 82429768 82429799 -41646373 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1213 6759 179 31 14 chr9 82429799 82430208 -41645964 - Lx7 LINE L1 -1031 4849 4427 5 1213 414 0 0 0 chr9 82431325 82431371 -41644801 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1213 639 306 95 34 chr9 82431412 82431676 -41644496 - B4 SINE B4 -12 280 1 6 1213 6246 114 6 3 chr9 82431678 82432628 -41643544 - Lx LINE L1 0 6654 5702 6 1213 481 284 18 0 chr9 82432750 82432859 -41643313 - PB1D7 SINE Alu -9 111 1 6 1213 345 244 33 11 chr9 82433413 82433504 -41642668 + MTEb LTR MaLR 287 379 0 6 1213 1032 358 69 77 chr9 82433541 82434290 -41641882 - LTR41B LTR ERVL -14 744 2 6 1213 463 245 0 9 chr9 82434738 82434845 -41641327 + PB1D10 SINE Alu 10 115 -2 6 1213 237 250 33 0 chr9 82434857 82434917 -41641255 + ID4_ SINE ID 5 66 -17 6 1213 828 100 0 0 chr9 82434947 82435067 -41641105 + (GGGGA)n Simple_repeat Simple_repeat 2 121 0 6 1213 216 0 0 0 chr9 82435074 82435098 -41641074 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1213 1179 260 36 6 chr9 82435996 82436360 -41639812 + MTEb LTR MaLR 5 379 0 6 1213 413 325 16 82 chr9 82436506 82436690 -41639482 + B4A SINE B4 2 173 -119 6 1213 242 291 0 112 chr9 82436732 82436821 -41639351 + RSINE1 SINE B4 87 165 0 6 1213 1042 308 81 9 chr9 82437174 82437521 -41638651 - MTEb LTR MaLR -7 372 1 6 1213 306 106 0 0 chr9 82438257 82438304 -41637868 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1213 284 267 35 0 chr9 82439986 82439997 -41636175 + ID4_ SINE ID 12 34 -118 6 1213 279 254 0 0 chr9 82439997 82440056 -41636116 + ID SINE ID 24 82 -142 6 1213 284 267 35 0 chr9 82440056 82440095 -41636077 + ID4_ SINE ID 35 128 -24 6 1213 180 0 0 0 chr9 82440946 82440966 -41635206 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1213 699 24 0 0 chr9 82441245 82441330 -41634842 + (CTG)n Simple_repeat Simple_repeat 2 86 0 6 1213 1095 51 73 0 chr9 82443150 82443287 -41632885 + B1_Mm SINE Alu 1 147 0 6 1213 199 68 85 0 chr9 82443307 82443366 -41632806 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1213 192 200 65 22 chr9 82443487 82443533 -41632639 - L2 LINE L2 -2927 492 445 6 1213 449 284 27 13 chr9 82443845 82443995 -41632177 - MER5A1 DNA MER1_type 0 166 15 6 1214 234 211 61 52 chr9 82444672 82444787 -41631385 + Lx6 LINE L1 7345 7460 0 6 1214 1785 163 79 49 chr9 82445018 82445385 -41630787 + ORR1C1 LTR MaLR 1 378 0 6 1214 640 278 5 74 chr9 82445501 82445691 -41630481 + B3A SINE B2 5 181 -17 6 1214 441 157 0 0 chr9 82445693 82445808 -41630364 + (CAGAGA)n Simple_repeat Simple_repeat 4 118 0 6 1214 24 53 0 0 chr9 82445813 82445851 -41630321 + AT_rich Low_complexity Low_complexity 1 38 0 6 1214 425 110 0 14 chr9 82445857 82445931 -41630241 + Lx4A LINE L1 6981 7053 -5 6 1214 234 0 0 0 chr9 82445961 82445987 -41630185 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1214 187 320 62 23 chr9 82447025 82447153 -41629019 + MIRb SINE MIR 7 139 -129 6 1214 292 232 14 14 chr9 82447774 82447844 -41628328 + MTEb LTR MaLR 309 378 -1 6 1214 182 123 46 69 chr9 82448881 82448968 -41627204 + CT-rich Low_complexity Low_complexity 3 87 0 6 1214 2610 269 56 28 chr9 82449197 82450060 -41626112 - Lx9 LINE L1 -256 7388 6502 6 1214 1653 168 10 24 chr9 82450060 82450352 -41625820 + ORR1B2 LTR MaLR 72 359 -8 6 1214 264 59 0 0 chr9 82450386 82450420 -41625752 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1214 297 0 0 0 chr9 82450505 82450538 -41625634 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 6 1214 1516 137 41 57 chr9 82450551 82450869 -41625303 + Lx LINE L1 6342 6654 0 6 1214 189 0 0 0 chr9 82450910 82450931 -41625241 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1214 1609 282 31 27 chr9 82450969 82451487 -41624685 - Lx8 LINE L1 -31 7442 6923 6 1214 225 0 0 0 chr9 82451544 82451569 -41624603 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1214 1044 118 19 19 chr9 82451578 82451734 -41624438 - B2_Mm2 SINE B2 -37 158 3 6 1214 347 347 6 117 chr9 82451766 82451929 -41624243 - B4 SINE B4 -121 171 27 6 1214 1411 255 32 37 chr9 82452388 82452763 -41623409 - MTEb LTR MaLR 0 379 7 6 1214 826 302 90 14 chr9 82454523 82454889 -41621283 + Lx8 LINE L1 6090 6483 -990 6 1214 660 298 88 70 chr9 82454887 82455848 -41620324 + L1MA5 LINE L1 4930 5935 -365 6 1214 229 366 88 16 chr9 82456299 82456424 -41619748 - L2b LINE L2 -1 3374 3241 6 1214 22 0 0 0 chr9 82456465 82456487 -41619685 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 357 336 31 0 chr9 82456750 82456878 -41619294 - L2b LINE L2 -584 2835 2704 6 1214 440 331 111 46 chr9 82457053 82457217 -41618955 + MLT1A0 LTR MaLR 1 184 -181 6 1214 504 0 0 0 chr9 82457217 82457273 -41618899 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 6 1214 440 331 111 46 chr9 82457273 82457415 -41618757 + MLT1A0 LTR MaLR 185 327 -38 6 1214 180 111 0 0 chr9 82457482 82457509 -41618663 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 6 1214 1029 116 0 0 chr9 82457509 82457655 -41618517 - B1_Mus2 SINE Alu 0 147 2 6 1214 334 267 123 65 chr9 82458207 82458248 -41617924 + L1_Rod LINE L1 903 943 -6665 6 1214 234 81 0 0 chr9 82458248 82458285 -41617887 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 6 1214 334 267 123 65 chr9 82458285 82458519 -41617653 + L1_Rod LINE L1 944 1194 -6414 6 1214 36922 7 0 1 chr9 82458520 82464312 -41611860 + L1Md_A LINE L1 1 5586 -297 6 1214 8994 5 1 0 chr9 82464312 82465307 -41610865 + L1Md_A LINE L1 5587 6582 0 6 1214 1143 217 30 32 chr9 82465316 82465695 -41610477 + L1_Rod LINE L1 1184 1561 -4286 6 1214 2174 302 61 54 chr9 82465739 82467650 -41608522 + Lx9 LINE L1 5377 7438 -206 6 1214 955 268 80 123 chr9 82467737 82468240 -41607932 - RLTR12B LTR ERVK -31 497 17 6 1214 750 314 47 19 chr9 82469693 82470229 -41605943 + L1MA4 LINE L1 5363 5913 -387 6 1214 995 258 102 45 chr9 82470673 82470986 -41605186 - ORR1D2 LTR MaLR -23 347 17 6 1214 4802 70 3 0 chr9 82471013 82471627 -41604545 - L1_Mus1 LINE L1 0 6567 5952 6 1214 2734 56 8 0 chr9 82471630 82472003 -41604169 + L1_Mus1 LINE L1 5588 5963 -604 6 1214 459 0 0 0 chr9 82472324 82472375 -41603797 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1214 2064 141 133 36 chr9 82472455 82472875 -41603297 + RMER6B LTR ERVK 1 461 0 6 1214 361 48 65 0 chr9 82472958 82473020 -41603152 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 6 1214 224 193 34 34 chr9 82474148 82474207 -41601965 + CT-rich Low_complexity Low_complexity 1 59 0 6 1214 302 250 52 10 chr9 82474695 82474792 -41601380 - Charlie1 DNA MER1_type -2544 237 137 6 1214 299 347 36 139 chr9 82475340 82475621 -41600551 + MLT1J LTR MaLR 232 483 -29 6 1214 949 269 39 92 chr9 82475793 82476153 -41600019 - MTE2a LTR MaLR -38 341 1 6 1214 439 300 44 80 chr9 82476656 82476910 -41599262 + Lx7 LINE L1 7078 7322 -374 6 1214 767 194 7 20 chr9 82476910 82477057 -41599115 - B1_Mur1 SINE Alu 0 149 5 6 1214 439 300 44 80 chr9 82477057 82477077 -41599095 + Lx7 LINE L1 7323 7342 -354 6 1214 909 179 122 30 chr9 82477222 82477452 -41598720 + Lx7 LINE L1 7442 7692 -4 6 1214 636 142 264 16 chr9 82477599 82477720 -41598452 - Lx9 LINE L1 -1 7643 7477 6 1214 459 0 0 0 chr9 82477720 82477771 -41598401 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1214 462 36 0 0 chr9 82477771 82477826 -41598346 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1214 636 142 264 16 chr9 82477826 82477896 -41598276 - Lx9 LINE L1 -168 7476 7404 6 1214 1596 171 115 11 chr9 82477883 82478249 -41597923 + Lx9 LINE L1 6708 7111 -533 6 1214 540 0 0 0 chr9 82478251 82478311 -41597861 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1214 438 342 65 33 chr9 82478496 82478771 -41597401 + B4A SINE B4 9 292 0 6 1214 222 159 44 22 chr9 82478842 82478887 -41597285 + L3 LINE CR1 2097 2142 -2347 6 1214 201 245 0 20 chr9 82479079 82479129 -41597043 + L3 LINE CR1 111 159 -4330 6 1214 945 171 0 0 chr9 82479133 82479308 -41596864 + GA-rich Low_complexity Low_complexity 2 176 0 6 1214 32902 76 16 4 chr9 82479882 82486179 -41589993 - L1Md_F2 LINE L1 -3 6579 204 6 1214 294 186 0 17 chr9 82486178 82486238 -41589934 + Lx7 LINE L1 6910 6968 -728 6 1214 933 54 0 58 chr9 82486239 82486377 -41589795 - ORR1A0 LTR MaLR -88 258 129 6 1214 24 32 0 0 chr9 82487549 82487580 -41588592 + AT_rich Low_complexity Low_complexity 1 31 0 6 1214 1736 175 49 27 chr9 82487825 82488190 -41587982 - Lx4A LINE L1 -1 7057 6685 6 1214 1223 150 34 1 chr9 82488203 82488435 -41587737 + Lx4A LINE L1 6459 6698 -278 6 1214 305 317 160 27 chr9 82489352 82489608 -41586564 + B4A SINE B4 3 292 0 6 1214 744 259 66 84 chr9 82490230 82490331 -41585841 + B4A SINE B4 1 100 -192 6 1214 2195 121 136 0 chr9 82490331 82490677 -41585495 + ORR1B1 LTR MaLR 1 393 -1 6 1214 744 259 66 84 chr9 82490677 82490862 -41585310 + B4A SINE B4 101 282 -10 6 1214 201 213 52 26 chr9 82490927 82491004 -41585168 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 6 1214 186 43 0 0 chr9 82491174 82491197 -41584975 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 6 1214 342 0 0 0 chr9 82491672 82491710 -41584462 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1214 4752 67 10 0 chr9 82492013 82492623 -41583549 - L1_Mus1 LINE L1 0 6567 5952 6 1214 2717 49 3 0 chr9 82492626 82492975 -41583197 + L1_Mus1 LINE L1 5588 5937 -630 6 1214 830 209 50 6 chr9 82494730 82494889 -41581283 + B3A SINE B2 1 166 -32 6 1214 521 99 12 0 chr9 82494889 82494970 -41581202 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1214 301 146 47 47 chr9 82495718 82495847 -41580325 + (TATATG)n Simple_repeat Simple_repeat 6 134 0 6 1214 7452 69 4 1 chr9 82495884 82497500 -41578672 + L1_Mus1 LINE L1 4946 6567 0 6 1214 346 270 0 0 chr9 82497510 82497584 -41578588 + MTD LTR MaLR 196 269 -150 6 1214 235 230 27 13 chr9 82497663 82497738 -41578434 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 1214 497 16 0 16 chr9 82498504 82498567 -41577605 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1214 720 274 122 47 chr9 82499073 82499685 -41576487 + L1M3 LINE L1 3969 4626 -1514 6 1214 265 266 32 0 chr9 82499684 82499778 -41576394 - L1M3 LINE L1 -1234 4906 4810 6 1214 229 260 28 19 chr9 82499871 82499977 -41576195 + L1M3 LINE L1 5504 5610 -702 6 1214 336 129 59 0 chr9 82500087 82500172 -41576000 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 1 1214 273 317 113 4 chr9 82500189 82500436 -41575736 + L1MA9 LINE L1 5836 6109 -203 2 1214 363 341 105 74 chr9 82500441 82500631 -41575541 + B4 SINE B4 97 292 0 3 1214 257 241 200 33 chr9 82500797 82500887 -41575285 - PB1D10 SINE Alu -10 107 3 4 1214 34 24 0 0 chr9 82500977 82501018 -41575154 + AT_rich Low_complexity Low_complexity 1 41 0 5 1214 21 0 0 0 chr9 82501441 82501462 -41574710 + AT_rich Low_complexity Low_complexity 1 21 0 6 1214 899 215 77 0 chr9 82501503 82501712 -41574460 - URR1B DNA MER1_type 0 225 1 7 1214 203 322 17 0 chr9 82504038 82504097 -41572075 - L2c LINE L2 0 3387 3328 8 1214 601 270 62 56 chr9 82504487 82504844 -41571328 + RLTR10D LTR ERVK 1 359 0 9 1214 671 0 13 0 chr9 82505011 82505090 -41571082 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 1 1214 536 29 0 14 chr9 82505090 82505161 -41571011 + (CATA)n Simple_repeat Simple_repeat 1 70 0 1 1214 1337 238 135 11 chr9 82505213 82505583 -41570589 + MTD LTR MaLR 1 416 -3 1 1214 283 211 197 0 chr9 82505587 82505663 -41570509 + ORR1C2 LTR MaLR 1 91 -283 1 1214 879 161 112 12 chr9 82505666 82505836 -41570336 + ORR1C2 LTR MaLR 198 384 0 1 1214 538 246 67 28 chr9 82505839 82506019 -41570153 - MER67C LTR ERV1 -66 645 459 1 1214 2568 35 38 0 chr9 82507394 82507707 -41568465 - IAPLTR2b LTR ERVK -2 325 1 1 1214 279 164 0 0 chr9 82508382 82508443 -41567729 + CT-rich Low_complexity Low_complexity 2 62 0 1 1214 405 58 43 0 chr9 82508446 82508515 -41567657 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1214 1006 229 141 52 chr9 82508966 82509349 -41566823 - MTD LTR MaLR 0 419 3 1 1214 195 129 0 0 chr9 82509565 82509596 -41566576 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1 1214 575 98 0 11 chr9 82509592 82509685 -41566487 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 2 1214 2368 103 40 3 chr9 82509899 82510250 -41565922 - ORR1B2 LTR MaLR -3 364 1 2 1214 546 16 0 0 chr9 82510566 82510629 -41565543 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1214 273 243 53 13 chr9 82510659 82510734 -41565438 + L2c LINE L2 3310 3387 0 2 1214 428 321 35 40 chr9 82511058 82511178 -41564994 + MIR SINE MIR 9 128 -134 2 1214 758 204 0 20 chr9 82511178 82511328 -41564844 - B1_Mur3 SINE Alu -1 148 2 2 1214 428 321 35 40 chr9 82511328 82511405 -41564767 + MIR SINE MIR 129 204 -58 2 1214 1247 246 40 48 chr9 82512353 82512725 -41563447 + RLTR14 LTR ERV1 3 371 -11 2 1214 652 136 61 0 chr9 82512817 82512949 -41563223 - Lx2 LINE L1 -1 6996 6857 2 1214 278 123 18 0 chr9 82513135 82513192 -41562980 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1214 1174 49 7 7 chr9 82513286 82513431 -41562741 + B1_Mm SINE Alu 2 146 -1 2 1214 950 0 9 0 chr9 82513432 82513542 -41562630 + (GAA)n Simple_repeat Simple_repeat 2 112 0 3 1214 222 37 0 0 chr9 82515035 82515062 -41561110 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1214 204 179 0 0 chr9 82515062 82515101 -41561071 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1214 1317 81 27 5 chr9 82515314 82515500 -41560672 + B2_Mm2 SINE B2 3 192 -3 3 1214 1228 41 0 0 chr9 82515501 82515648 -41560524 + B1_Mus2 SINE Alu 1 147 0 3 1214 25 51 0 0 chr9 82515828 82515867 -41560305 + AT_rich Low_complexity Low_complexity 1 39 0 3 1214 1234 258 152 9 chr9 82516188 82516536 -41559636 + MTD LTR MaLR 6 403 -16 3 1214 23 54 0 0 chr9 82516620 82516657 -41559515 + AT_rich Low_complexity Low_complexity 1 37 0 3 1214 827 261 0 24 chr9 82516902 82517114 -41559058 + B3 SINE B2 5 211 -5 3 1214 477 0 0 0 chr9 82517869 82517922 -41558250 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1214 531 0 0 0 chr9 82517923 82517982 -41558190 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1214 1023 95 20 0 chr9 82518467 82518614 -41557558 + B1_Mur4 SINE Alu 1 150 0 4 1214 3684 78 0 14 chr9 82518652 82519156 -41557016 + L1Md_F2 LINE L1 6086 6582 0 4 1214 675 67 0 0 chr9 82519309 82519398 -41556774 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 4 1214 820 301 55 89 chr9 82519716 82519775 -41556397 + B4A SINE B4 7 62 -230 4 1214 2333 64 19 0 chr9 82519775 82520087 -41556085 - L1Md_F2 LINE L1 0 6582 6265 4 1214 820 301 55 89 chr9 82520087 82520319 -41555853 + B4A SINE B4 63 288 -4 4 1214 657 276 0 67 chr9 82520728 82520938 -41555234 + B3A SINE B2 1 196 -2 4 1214 1379 43 16 0 chr9 82521575 82521760 -41554412 - L1_Mus1 LINE L1 -492 6075 5888 4 1214 3943 45 4 22 chr9 82521760 82522258 -41553914 + L1_Mus1 LINE L1 6079 6567 0 4 1214 247 49 49 0 chr9 82522262 82522303 -41553869 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 4 1214 226 300 38 0 chr9 82522430 82522510 -41553662 - MIR3 SINE MIR -29 179 97 4 1214 380 254 76 42 chr9 82523221 82523365 -41552807 + L1M2 LINE L1 5509 5657 -634 5 1214 4696 40 7 0 chr9 82523547 82524117 -41552055 + L1Md_F3 LINE L1 5997 6570 -14 5 1214 606 359 45 18 chr9 82525300 82525586 -41550586 + RMER15 LTR ERVL 276 569 -6 5 1214 497 333 21 0 chr9 82525679 82525865 -41550307 + RMER15-int LTR ERVL 137 326 -4673 5 1214 304 264 142 27 chr9 82528180 82528328 -41547844 - L2c LINE L2 -1 3425 3258 5 1214 233 145 65 0 chr9 82529930 82529992 -41546180 + Lx5 LINE L1 6969 7034 -16 5 1214 633 27 0 0 chr9 82529992 82530067 -41546105 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 5 1214 639 0 0 0 chr9 82530074 82530145 -41546027 + (GGAA)n Simple_repeat Simple_repeat 1 71 0 5 1214 24 0 0 0 chr9 82530741 82530765 -41545407 + AT_rich Low_complexity Low_complexity 1 24 0 5 1214 234 0 0 0 chr9 82532543 82532569 -41543603 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1214 24 0 0 0 chr9 82532703 82532727 -41543445 + AT_rich Low_complexity Low_complexity 1 24 0 5 1214 328 37 0 0 chr9 82532727 82532781 -41543391 - L1Md_F2 LINE L1 -1 6581 6528 6 1214 2679 57 0 3 chr9 82532782 82533137 -41543035 + L1Md_F2 LINE L1 6096 6449 -133 6 1214 486 298 0 9 chr9 82534726 82534841 -41541331 + RSINE1 SINE B4 4 117 -48 6 1214 603 0 0 0 chr9 82534851 82534918 -41541254 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 1214 270 0 0 0 chr9 82534918 82534947 -41541225 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1214 24 32 0 0 chr9 82534947 82534978 -41541194 + AT_rich Low_complexity Low_complexity 1 31 0 6 1214 1075 172 103 0 chr9 82535028 82535232 -41540940 + URR1A DNA MER1_type 1 225 -1 6 1214 1665 147 3 3 chr9 82535304 82535597 -41540575 + L1_Mur2 LINE L1 4928 5220 -657 6 1214 694 235 23 0 chr9 82537411 82537543 -41538629 + B1F SINE Alu 14 148 -1 6 1214 32357 81 19 18 chr9 82538081 82538893 -41537279 - L1Md_F2 LINE L1 -13 6569 5756 6 1214 392 0 21 0 chr9 82538893 82538941 -41537231 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1214 1123 52 0 0 chr9 82538941 82539077 -41537095 - B1_Mus2 SINE Alu -10 137 2 7 1214 32357 103 19 15 chr9 82539077 82544594 -41531578 - L1Md_F2 LINE L1 -128 5755 203 6 1214 486 0 0 0 chr9 82545375 82545429 -41530743 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 7 1214 1107 73 0 0 chr9 82545429 82545566 -41530606 - B1_Mus1 SINE Alu -10 138 2 7 1214 679 193 105 0 chr9 82546236 82546417 -41529755 + L1_Mur3 LINE L1 4822 5021 -859 7 1214 387 151 0 0 chr9 82546417 82546490 -41529682 + L1_Mur2 LINE L1 430 502 -6584 7 1214 525 58 58 11 chr9 82546489 82546576 -41529596 - L1_Mur2 LINE L1 -4402 1475 1385 7 1214 617 142 28 7 chr9 82546575 82546717 -41529455 + L1_Mur2 LINE L1 1922 2066 -3811 7 1214 261 229 90 101 chr9 82546705 82546894 -41529278 + Lx9 LINE L1 7443 7629 -15 7 1214 784 256 34 10 chr9 82546908 82547117 -41529055 + B3 SINE B2 2 215 -1 7 1214 461 218 0 33 chr9 82547158 82547248 -41528924 + B3 SINE B2 1 87 -129 7 1214 574 238 273 74 chr9 82547335 82547767 -41528405 + RMER20B LTR ERVK 88 605 -22 7 1214 488 192 135 8 chr9 82547742 82547868 -41528304 + B3 SINE B2 70 211 -5 7 1214 526 294 103 4 chr9 82547954 82548217 -41527955 - L1MA6 LINE L1 -270 6030 5742 8 1214 205 323 68 39 chr9 82548497 82548600 -41527572 - L2c LINE L2 -47 3340 3235 8 1214 195 139 0 0 chr9 82548891 82548927 -41527245 + (CACAG)n Simple_repeat Simple_repeat 5 40 0 8 1214 206 256 34 39 chr9 82549589 82549768 -41526404 + (TGAG)n Simple_repeat Simple_repeat 2 179 0 8 1214 860 75 20 7 chr9 82549849 82549997 -41526175 + (GA)n Simple_repeat Simple_repeat 1 150 0 8 1214 2249 170 45 31 chr9 82550601 82551086 -41525086 + RLTR40 LTR ERVK 5 496 -321 8 1214 1841 39 0 0 chr9 82551086 82551315 -41524857 - L1Md_F3 LINE L1 -249 6335 6107 8 1214 1505 25 5 25 chr9 82551315 82551516 -41524656 + L1Md_F3 LINE L1 6385 6581 -3 8 1214 1748 152 56 19 chr9 82551516 82551837 -41524335 + RLTR40 LTR ERVK 483 815 -2 8 1214 1855 306 78 26 chr9 82553917 82555253 -41520919 - Lx8 LINE L1 -1481 5992 4552 8 1214 599 276 112 84 chr9 82556288 82556877 -41519295 + RLTR26 LTR ERVK 1 623 -19 8 1214 415 203 47 47 chr9 82556904 82557033 -41519139 + L1_Mur2 LINE L1 518 646 -6066 8 1214 1957 207 27 14 chr9 82557044 82557484 -41518688 + Lx4B LINE L1 6600 7045 -13 9 1214 1738 269 16 38 chr9 82557482 82557977 -41518195 + Lx5 LINE L1 6564 7047 -3 9 1214 448 211 10 31 chr9 82558026 82558124 -41518048 - B1_Mur1 SINE Alu -5 144 49 9 1214 22 35 0 0 chr9 82559378 82559407 -41516765 + AT_rich Low_complexity Low_complexity 1 29 0 9 1214 1157 230 124 43 chr9 82559408 82559754 -41516418 - ORR1D1 LTR MaLR 0 374 1 9 1214 240 122 0 0 chr9 82559796 82559837 -41516335 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1214 3888 119 14 5 chr9 82560695 82561278 -41514894 + Lx2 LINE L1 6407 6994 -3 9 1214 269 340 9 19 chr9 82561523 82561631 -41514541 + MTE2b LTR MaLR 265 371 -8 9 1214 312 271 0 68 chr9 82562497 82562600 -41513572 - RSINE1 SINE B4 -61 104 9 9 1214 1240 271 77 16 chr9 82562794 82563173 -41512999 + MTD LTR MaLR 18 419 0 9 1214 462 341 22 0 chr9 82563237 82563375 -41512797 - ID_B1 SINE B4 -4 220 80 1 1214 21 36 0 0 chr9 82563381 82563409 -41512763 + AT_rich Low_complexity Low_complexity 1 28 0 1 1214 2053 24 8 8 chr9 82563427 82563675 -41512497 - L1Md_F3 LINE L1 -1 6583 6336 1 1214 26 50 0 0 chr9 82563682 82563722 -41512450 + AT_rich Low_complexity Low_complexity 1 40 0 1 1214 274 265 24 24 chr9 82564640 82564725 -41511447 - LTR16A1 LTR ERVL -101 355 271 1 1214 603 0 0 0 chr9 82564871 82564938 -41511234 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1214 612 62 0 0 chr9 82564938 82565018 -41511154 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1214 358 221 109 8 chr9 82565463 82565658 -41510514 - L1M2 LINE L1 -730 5561 5301 1 1214 249 268 12 0 chr9 82565683 82565765 -41510407 - L1_Rod LINE L1 -638 5209 5127 1 1214 8124 24 0 0 chr9 82565836 82566977 -41509195 - L1Md_T LINE L1 0 6582 5442 1 1214 791 303 82 11 chr9 82566966 82567403 -41508769 - L1M2 LINE L1 -1014 5129 4662 1 1214 3837 118 70 20 chr9 82568343 82569058 -41507114 - RMER17A LTR ERVK 0 751 1 1 1214 201 226 0 0 chr9 82569633 82569686 -41506486 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1214 1084 255 10 59 chr9 82569698 82570002 -41506170 - B4 SINE B4 -3 289 1 1 1214 198 325 90 51 chr9 82570117 82570295 -41505877 - L2a LINE L2 0 3426 3242 1 1214 24 0 0 0 chr9 82570744 82570768 -41505404 + AT_rich Low_complexity Low_complexity 1 24 0 1 1214 341 333 10 48 chr9 82570883 82570987 -41505185 + PB1D10 SINE Alu 5 104 -13 1 1214 195 190 0 0 chr9 82570991 82571049 -41505123 + CT-rich Low_complexity Low_complexity 3 60 0 1 1214 1149 287 18 5 chr9 82571945 82572344 -41503828 + Lx7 LINE L1 3709 4112 -1768 1 1214 5200 41 0 3 chr9 82572331 82572991 -41503181 - L1Md_F2 LINE L1 -103 5780 5123 1 1214 6136 56 1 5 chr9 82572991 82573775 -41502397 + L1Md_F2 LINE L1 5802 6582 0 1 1214 843 271 65 51 chr9 82573778 82574428 -41501744 + Lx7 LINE L1 4085 4743 -1137 1 1214 1314 85 0 0 chr9 82574428 82574734 -41501438 + (CA)n Simple_repeat Simple_repeat 1 306 0 1 1214 302 116 0 0 chr9 82574734 82574777 -41501395 + HAL1-3A_ME LINE L1 1975 2017 -841 1 1214 1305 118 0 3 chr9 82574778 82575082 -41501090 + (CA)n Simple_repeat Simple_repeat 1 302 0 1 151 394 314 29 44 chr9 82575104 82575406 -41500766 + Lx7 LINE L1 4734 5027 -820 1 1215 2775 210 51 8 chr9 82575434 82576024 -41500148 - Lx5 LINE L1 -5 7045 6431 1 1215 326 338 62 7 chr9 82576026 82576172 -41500000 + L1M2 LINE L1 5078 5231 -912 1 1215 733 191 29 0 chr9 82576187 82576323 -41499849 - Lx5 LINE L1 -425 6625 6486 1 1215 941 293 126 25 chr9 82576327 82576495 -41499677 + Lx7 LINE L1 5211 5378 -502 1 1215 543 123 85 0 chr9 82576495 82576601 -41499571 + Lx2 LINE L1 6881 6995 -2 1 1215 941 293 126 25 chr9 82576601 82576913 -41499259 + Lx7 LINE L1 5379 5724 -156 1 1215 251 54 0 26 chr9 82576913 82576951 -41499221 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1 1215 941 306 116 20 chr9 82576951 82577167 -41499005 + Lx7 LINE L1 5725 5973 -1671 1 1215 4157 222 68 38 chr9 82577225 82578747 -41497425 + Lx7 LINE L1 6078 7692 -4 1 1215 423 0 0 0 chr9 82578903 82578950 -41497222 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1215 377 290 80 30 chr9 82579570 82579833 -41496339 + B4A SINE B4 3 278 -14 1 1215 306 384 0 0 chr9 82581887 82581986 -41494186 + ID_B1 SINE B4 94 192 -32 1 1215 477 178 25 0 chr9 82581988 82582106 -41494066 + GA-rich Low_complexity Low_complexity 1 121 0 1 1215 484 306 16 39 chr9 82582200 82582329 -41493843 + RSINE1 SINE B4 7 132 -33 1 1215 393 22 0 0 chr9 82582335 82582381 -41493791 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1215 605 294 5 25 chr9 82582812 82583011 -41493161 + B3A SINE B2 1 195 -3 1 1215 4856 87 19 7 chr9 82583574 82584254 -41491918 - L1_Mus3 LINE L1 -7 6631 5944 1 1215 25 0 0 0 chr9 82584416 82584441 -41491731 + AT_rich Low_complexity Low_complexity 1 25 0 1 1215 351 324 95 17 chr9 82584687 82584866 -41491306 + B3A SINE B2 1 193 -5 1 1215 571 325 18 88 chr9 82585374 82585600 -41490572 - B4 SINE B4 -1 291 82 1 1215 360 299 0 0 chr9 82586002 82586089 -41490083 - B4 SINE B4 -204 88 2 1 1215 18558 170 93 31 chr9 82586386 82588827 -41487345 + Lx2 LINE L1 866 3350 -2533 1 1215 309 26 0 0 chr9 82588827 82588865 -41487307 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1215 202 29 28 28 chr9 82588865 82588901 -41487271 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1215 937 18 0 0 chr9 82588901 82589013 -41487159 - B1_Mus2 SINE Alu -13 134 23 1 1215 18558 161 88 34 chr9 82589013 82592234 -41483938 + Lx2 LINE L1 3351 6986 -11 1 1215 555 183 64 19 chr9 82592659 82592815 -41483357 + Lx LINE L1 6491 6653 -1 1 1215 525 254 67 0 chr9 82593121 82593255 -41482917 + B1F SINE Alu 1 143 -6 1 1215 211 323 0 29 chr9 82593256 82593358 -41482814 + A-rich Low_complexity Low_complexity 2 100 0 1 1215 260 313 0 0 chr9 82593258 82593325 -41482847 + GA-rich Low_complexity Low_complexity 4 70 0 1 1215 967 200 86 52 chr9 82594003 82594324 -41481848 - Lx2B LINE L1 -68 6990 6572 1 1215 195 294 21 52 chr9 82594507 82594604 -41481568 + L3 LINE CR1 2736 2829 -1660 1 1215 243 0 0 0 chr9 82594713 82594740 -41481432 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1215 2722 52 7 113 chr9 82595248 82595682 -41480490 + RLTR10 LTR ERVK 1 388 -2 1 1215 2776 26 3 0 chr9 82595694 82596039 -41480133 + RLTR10-int LTR ERVK 41 386 -1601 1 1215 7952 18 1 0 chr9 82596032 82596975 -41479197 + RLTR10-int LTR ERVK 1043 1986 -1 1 1215 2471 28 2 279 chr9 82596975 82597512 -41478660 + RLTR10 LTR ERVK 1 388 -2 1 1215 1487 164 110 10 chr9 82598801 82599102 -41477070 - Lx9 LINE L1 -398 7246 6916 1 1215 1502 189 35 3 chr9 82599103 82599442 -41476730 + Lx9 LINE L1 7294 7643 -1 1 1215 200 292 0 0 chr9 82599611 82599659 -41476513 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1215 1459 301 87 39 chr9 82599698 82600763 -41475409 + L1MC3 LINE L1 6559 7674 -111 1 1215 340 256 13 0 chr9 82600838 82600916 -41475256 + ID4 SINE ID 5 83 0 1 1215 710 268 38 0 chr9 82601251 82601408 -41474764 - RSINE1 SINE B4 -1 164 2 1 1215 318 106 0 0 chr9 82601713 82601760 -41474412 + (TTATG)n Simple_repeat Simple_repeat 3 49 0 1 1215 198 0 0 0 chr9 82603018 82603040 -41473132 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1215 240 167 0 0 chr9 82603253 82603301 -41472871 + G-rich Low_complexity Low_complexity 2 49 0 1 1215 697 186 323 0 chr9 82606234 82606395 -41469777 + B3 SINE B2 1 213 -3 1 1215 2092 172 47 6 chr9 82607125 82607199 -41468973 + ORR1C1 LTR MaLR 1 74 -304 1 1215 2725 76 41 26 chr9 82607199 82607617 -41468555 + L1Md_A LINE L1 6159 6582 0 1 1215 2092 172 47 6 chr9 82607617 82607905 -41468267 + ORR1C1 LTR MaLR 75 377 -1 1 1215 6403 130 32 19 chr9 82608876 82610802 -41465370 - Lx LINE L1 -3 6651 4691 1 1215 191 386 79 5 chr9 82611197 82611400 -41464772 - MIRb SINE MIR -14 254 37 1 1215 283 357 40 40 chr9 82611966 82612141 -41464031 + L2c LINE L2 3157 3331 -56 1 1215 184 371 29 95 chr9 82612150 82612287 -41463885 - L2c LINE L2 -8 3379 3252 1 1215 1203 129 71 9 chr9 82612380 82612592 -41463580 + URR1B DNA MER1_type 1 225 0 1 1215 205 360 97 23 chr9 82612618 82612794 -41463378 - L2c LINE L2 -695 2724 2536 1 1215 197 0 0 117 chr9 82613729 82613789 -41462383 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1215 329 261 29 0 chr9 82613792 82613861 -41462311 - ID4 SINE ID -5 78 8 1 1215 370 375 22 0 chr9 82613889 82614025 -41462147 + MLT1A0 LTR MaLR 6 144 -221 1 1215 443 284 88 0 chr9 82614037 82614139 -41462033 + RSINE1 SINE B4 4 114 -51 1 1215 387 92 0 0 chr9 82614149 82614214 -41461958 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 1 1215 189 74 0 0 chr9 82614996 82615023 -41461149 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1215 325 310 100 86 chr9 82615430 82615790 -41460382 + LTR90A LTR LTR 47 411 -565 1 1215 22 0 0 0 chr9 82615862 82615884 -41460288 + AT_rich Low_complexity Low_complexity 1 22 0 1 1215 256 326 110 52 chr9 82615928 82616083 -41460089 - MIRb SINE MIR -79 189 26 1 1215 2138 171 91 92 chr9 82616136 82616502 -41459670 + RLTR24 LTR ERV1 1 347 -182 1 1215 1107 53 0 0 chr9 82616502 82616635 -41459537 + B1_Mm SINE Alu 3 135 -12 1 1215 242 87 22 0 chr9 82616636 82616682 -41459490 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 1215 2138 171 91 92 chr9 82616682 82616843 -41459329 + RLTR24 LTR ERV1 348 529 0 1 1215 969 174 0 0 chr9 82617527 82617803 -41458369 + (TATATG)n Simple_repeat Simple_repeat 1 276 0 1 1215 3585 36 2 9 chr9 82618665 82619107 -41457065 + L1Md_F2 LINE L1 6142 6580 -2 1 1215 227 300 27 0 chr9 82619655 82619765 -41456407 + Lx6 LINE L1 7317 7429 -31 1 1215 1409 29 6 0 chr9 82620833 82621006 -41455166 + L1Md_F2 LINE L1 5413 5586 -297 1 1215 7890 53 10 7 chr9 82621006 82621998 -41454174 + L1Md_F2 LINE L1 5587 6581 -1 1 1215 31 0 0 0 chr9 82623833 82623864 -41452308 + AT_rich Low_complexity Low_complexity 1 31 0 1 1215 3714 34 2 0 chr9 82624038 82624482 -41451690 - L1Md_A LINE L1 -1 6581 6137 1 1215 909 134 112 0 chr9 82624482 82624569 -41451603 - Lx2 LINE L1 -24 6973 6886 1 1215 207 0 0 0 chr9 82624569 82624592 -41451580 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 1 1215 909 134 112 0 chr9 82624592 82624683 -41451489 - Lx2 LINE L1 -112 6885 6776 1 1215 3430 107 15 6 chr9 82624681 82625215 -41450957 - Lx2 LINE L1 -352 6645 6107 1 1215 214 306 8 24 chr9 82625400 82625527 -41450645 + GA-rich Low_complexity Low_complexity 3 127 0 1 1215 194 0 39 0 chr9 82627302 82627328 -41448844 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1 1215 2059 227 89 54 chr9 82627396 82628024 -41448148 + Lx6 LINE L1 6794 7443 -17 1 1215 570 67 0 0 chr9 82628029 82628104 -41448068 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 1 1215 1431 12 0 0 chr9 82628104 82628268 -41447904 + (GGGAA)n Simple_repeat Simple_repeat 3 167 0 1 1215 462 36 0 0 chr9 82628270 82628326 -41447846 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 1 1215 361 81 16 16 chr9 82628531 82628594 -41447578 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 1215 661 291 26 13 chr9 82630099 82630325 -41445847 + Lx8 LINE L1 6375 6603 -870 1 1215 1064 192 26 59 chr9 82630937 82631241 -41444931 - Lx7 LINE L1 0 7696 7403 1 1215 533 288 38 0 chr9 82631969 82632101 -41444071 - RSINE1 SINE B4 -13 152 16 1 1215 1380 207 126 15 chr9 82632741 82633074 -41443098 - ORR1D1 LTR MaLR 0 374 5 1 1215 888 307 36 18 chr9 82633118 82633503 -41442669 + Lx8 LINE L1 5456 5847 0 1 1215 264 238 0 0 chr9 82633677 82633740 -41442432 + L1_Rod LINE L1 5336 5398 -449 1 1215 22 0 0 0 chr9 82633789 82633811 -41442361 + AT_rich Low_complexity Low_complexity 1 22 0 1 1215 278 292 18 54 chr9 82633842 82633954 -41442218 + MER45B DNA Tip100 932 1039 -1 2 1215 450 0 0 0 chr9 82634456 82634506 -41441666 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1215 317 127 0 0 chr9 82634576 82634631 -41441541 - Lx3_Mus LINE L1 -875 6134 6080 2 1215 968 142 0 13 chr9 82634965 82635103 -41441069 + B1_Mus1 SINE Alu 1 137 -11 2 1215 210 37 0 0 chr9 82635103 82635130 -41441042 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1215 968 142 0 13 chr9 82635130 82635141 -41441031 + B1_Mus1 SINE Alu 138 148 0 2 1215 951 229 81 19 chr9 82635148 82635455 -41440717 + L1_Mur3 LINE L1 4379 4704 -1176 2 1215 1706 304 79 24 chr9 82635526 82636274 -41439898 + Lx8 LINE L1 6036 6824 -649 1 1215 613 304 51 35 chr9 82636280 82636426 -41439746 - Lx8 LINE L1 -377 7096 6952 2 1215 396 0 0 0 chr9 82636426 82636470 -41439702 + (CATA)n Simple_repeat Simple_repeat 2 45 0 2 1215 613 304 51 35 chr9 82636470 82636579 -41439593 - Lx8 LINE L1 -522 6951 6837 2 1215 1184 68 0 0 chr9 82636943 82637090 -41439082 + B1_Mus1 SINE Alu 2 148 0 2 1215 1632 309 8 14 chr9 82637128 82637644 -41438528 + Lx5 LINE L1 6503 7015 -35 2 1215 740 80 13 0 chr9 82637704 82637857 -41438315 + (GGAA)n Simple_repeat Simple_repeat 1 155 0 2 1215 1433 28 11 0 chr9 82637861 82638038 -41438134 + (GGAAA)n Simple_repeat Simple_repeat 2 180 0 2 1215 666 0 0 0 chr9 82638038 82638112 -41438060 + (GAAAA)n Simple_repeat Simple_repeat 1 74 0 2 1215 272 272 0 22 chr9 82640280 82640367 -41435805 + B1F1 SINE Alu 61 141 -8 2 1215 307 367 82 37 chr9 82640829 82641098 -41435074 - L1M5 LINE L1 -662 5578 5298 2 1215 344 316 20 0 chr9 82641167 82641265 -41434907 + MLT1B LTR MaLR 8 107 -283 2 1215 226 228 0 0 chr9 82641399 82641456 -41434716 + L1M2 LINE L1 5190 5246 -897 2 1215 241 297 116 8 chr9 82641511 82641640 -41434532 + L1M2 LINE L1 5342 5484 -816 2 1215 1097 170 139 0 chr9 82641627 82641886 -41434286 + Lx5 LINE L1 4448 4742 -1135 2 1215 3614 158 27 206 chr9 82642398 82643560 -41432612 + Lx5 LINE L1 4735 5687 -190 2 1215 1668 170 14 0 chr9 82643561 82643838 -41432334 + ORR1B1 LTR MaLR 1 281 -113 2 1215 2771 264 57 67 chr9 82643888 82645038 -41431134 + Lx5 LINE L1 5691 6829 -221 2 1215 759 245 32 28 chr9 82645056 82645405 -41430767 + Lx9 LINE L1 5506 5896 -1800 2 1215 566 324 109 44 chr9 82645971 82646233 -41429939 + B4A SINE B4 1 283 -9 2 1215 612 40 0 0 chr9 82646233 82646308 -41429864 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 1215 566 324 109 44 chr9 82646308 82646319 -41429853 + B4A SINE B4 284 292 0 2 1215 314 271 0 0 chr9 82646385 82646455 -41429717 + L1M3d LINE L1 182 251 -6291 2 1215 336 239 75 63 chr9 82646451 82646625 -41429547 + L1M3d LINE L1 1744 1919 -4646 2 1215 382 280 78 78 chr9 82646631 82646930 -41429242 + L1M3d LINE L1 5423 5715 -926 2 1215 309 322 125 7 chr9 82646930 82647074 -41429098 + RSINE1 SINE B4 3 163 -2 2 1215 711 249 121 21 chr9 82647074 82647465 -41428707 + L1M3d LINE L1 5716 6144 -645 2 1215 765 61 0 0 chr9 82647644 82647743 -41428429 + (GGA)n Simple_repeat Simple_repeat 2 100 0 2 1215 492 17 0 0 chr9 82647743 82647796 -41428376 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1215 982 174 180 17 chr9 82647873 82648110 -41428062 - MTC LTR MaLR 0 421 126 2 1215 239 312 106 21 chr9 82648463 82648604 -41427568 + LTRIS_Mus LTR ERV1 354 506 -81 2 1215 824 200 79 10 chr9 82648651 82648853 -41427319 - MTC LTR MaLR -198 223 8 2 1215 262 256 66 11 chr9 82648853 82648944 -41427228 + L1M3 LINE L1 3747 3842 -2298 2 1215 1980 204 51 5 chr9 82648968 82649358 -41426814 - MTD LTR MaLR 0 419 12 2 1215 247 240 120 0 chr9 82649407 82649507 -41426665 + L1M3 LINE L1 3852 3963 -2177 2 1215 1012 303 49 49 chr9 82649551 82649754 -41426418 + Lx9 LINE L1 7011 7195 -449 2 1215 381 83 0 0 chr9 82649754 82649814 -41426358 - Lx9 LINE L1 -1 7643 7584 2 1215 1012 303 49 49 chr9 82649814 82650217 -41425955 + Lx9 LINE L1 7196 7617 -27 2 1215 22 35 0 0 chr9 82650236 82650265 -41425907 + AT_rich Low_complexity Low_complexity 1 29 0 2 1215 394 250 40 80 chr9 82650265 82650321 -41425851 + L1M3 LINE L1 3963 4013 -2127 2 1215 507 33 0 0 chr9 82650321 82650382 -41425790 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1215 394 251 42 75 chr9 82650382 82650539 -41425633 + L1M3 LINE L1 4014 4171 -1972 2 1215 722 194 14 0 chr9 82650542 82650681 -41425491 + B1_Mur3 SINE Alu 9 149 0 2 1215 867 287 62 30 chr9 82650690 82651290 -41424882 + L1M3 LINE L1 4145 4763 -1377 2 1215 2464 269 113 26 chr9 82651310 82652311 -41423861 + Lx9 LINE L1 6386 7473 -171 2 1215 846 20 0 0 chr9 82653121 82653221 -41422951 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 2 1215 374 332 15 45 chr9 82653446 82653648 -41422524 + RMER2 LTR ERV1 368 563 -4 2 1215 367 318 60 7 chr9 82654208 82654357 -41421815 + MIR SINE MIR 39 195 -67 2 1215 2158 217 125 71 chr9 82654455 82655049 -41421123 - RMER20B LTR ERVK -1 626 1 2 1215 520 310 71 37 chr9 82655049 82655317 -41420855 + B4A SINE B4 16 292 0 2 1215 367 307 10 25 chr9 82656627 82656760 -41419412 + PB1 SINE Alu 6 125 -2 2 1215 640 340 111 20 chr9 82656960 82657419 -41418753 - MER45B DNA Tip100 0 1040 540 2 1215 527 329 25 13 chr9 82657473 82657630 -41418542 - MER45B DNA Tip100 -673 367 209 2 1215 1192 219 174 93 chr9 82657712 82658109 -41418063 + MT2A LTR ERVL 14 442 -91 2 1215 649 241 39 0 chr9 82658137 82658296 -41417876 - MTD LTR MaLR -84 335 170 2 1215 565 294 30 6 chr9 82658295 82658463 -41417709 - MER45B DNA Tip100 -853 187 16 2 1215 239 71 24 0 chr9 82658739 82658781 -41417391 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1215 1134 54 0 45 chr9 82658781 82658935 -41417237 + B1_Mm SINE Alu 1 147 0 2 1215 211 67 21 43 chr9 82658935 82658982 -41417190 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2 1215 3517 18 2 0 chr9 82659091 82659486 -41416686 + MTA_Mm LTR MaLR 1 396 0 2 1215 250 282 65 58 chr9 82660209 82660348 -41415824 + HAL1 LINE L1 1627 1766 -741 2 1215 590 357 84 35 chr9 82660860 82661171 -41415001 - LTR16B1 LTR ERVL -148 332 7 2 1215 3264 34 150 0 chr9 82661530 82661943 -41414229 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1215 1143 131 40 57 chr9 82661944 82662229 -41413943 + IAPEz-int LTR ERVK 9 258 -7323 2 1215 229 244 0 0 chr9 82662232 82662273 -41413899 + RLTR27 LTR ERVK 232 272 -37 2 1215 9476 60 58 32 chr9 82662273 82663780 -41412392 + IAPEz-int LTR ERVK 165 1636 -4845 2 1215 1751 23 0 40 chr9 82663779 82664007 -41412165 + IAPEz-int LTR ERVK 5736 5954 -527 2 1215 29002 9 1 3 chr9 82664030 82669446 -41406726 + L1Md_A LINE L1 206 5586 -297 2 1215 8889 12 0 0 chr9 82669446 82670442 -41405730 + L1Md_A LINE L1 5587 6582 0 2 1215 31 44 0 0 chr9 82670542 82670587 -41405585 + AT_rich Low_complexity Low_complexity 1 45 0 2 1215 4081 76 42 24 chr9 82670587 82671177 -41404995 + L1Md_F2 LINE L1 5980 6580 -2 2 1215 2840 66 44 10 chr9 82671185 82671568 -41404604 + MTA_Mm LTR MaLR 1 396 0 2 1215 8318 68 9 1 chr9 82671568 82672656 -41403516 + MTA_Mm-int LTR MaLR 1 1097 -1 2 1215 2787 44 0 6 chr9 82672657 82673003 -41403169 + MTA_Mm LTR MaLR 1 344 -52 2 1215 180 0 0 0 chr9 82673003 82673023 -41403149 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1215 3817 74 19 0 chr9 82673023 82673552 -41402620 + IAPEz-int LTR ERVK 5941 6479 -2 2 1215 2708 34 3 39 chr9 82673557 82673892 -41402280 + IAPLTR2_Mm LTR ERVK 5 327 0 2 1215 31654 82 4 5 chr9 82673936 82679099 -41397073 + L1Md_F2 LINE L1 446 5585 -298 2 1215 8117 51 0 0 chr9 82679100 82680094 -41396078 + L1Md_F2 LINE L1 5587 6580 -2 2 1215 276 359 9 19 chr9 82680108 82680216 -41395956 - MLT1J-int LTR MaLR -540 847 741 2 1215 1819 186 40 23 chr9 82680507 82680904 -41395268 + Lx9 LINE L1 6992 7395 -249 2 1215 374 198 200 19 chr9 82681426 82681586 -41394586 + Lx9 LINE L1 7408 7596 -48 2 1215 24 32 0 0 chr9 82683034 82683065 -41393107 + AT_rich Low_complexity Low_complexity 1 31 0 2 1215 294 95 0 0 chr9 82683601 82683643 -41392529 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 1215 429 362 54 57 chr9 82685508 82685857 -41390315 + L1M5 LINE L1 3320 3667 -2479 2 1215 204 158 0 0 chr9 82685975 82686013 -41390159 + GA-rich Low_complexity Low_complexity 3 40 0 2 1215 723 266 9 27 chr9 82686174 82686398 -41389774 - L1_Mur3 LINE L1 -264 5616 5397 2 1215 984 167 62 9 chr9 82686407 82686631 -41389541 - Lx7 LINE L1 0 7696 7461 2 1215 1089 101 0 0 chr9 82686639 82686818 -41389354 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1215 338 61 20 0 chr9 82686890 82686939 -41389233 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1215 362 283 96 7 chr9 82687048 82687194 -41388978 + L1M5 LINE L1 3728 3886 -2260 2 1215 372 125 0 0 chr9 82687298 82687362 -41388810 + (CAGA)n Simple_repeat Simple_repeat 4 67 0 2 1215 741 281 132 16 chr9 82687805 82688243 -41387929 - L1MC2 LINE L1 -65 6268 5790 2 1215 639 274 11 0 chr9 82688295 82688470 -41387702 - L1MC2 LINE L1 -699 5645 5469 2 1215 343 271 115 0 chr9 82688491 82688613 -41387559 + L1M5 LINE L1 4258 4393 -1753 2 1215 864 292 10 5 chr9 82688633 82688829 -41387343 + B3 SINE B2 8 204 -12 2 1215 349 283 95 91 chr9 82689010 82689251 -41386921 + L1M5 LINE L1 4461 4702 -1444 2 1215 340 383 30 46 chr9 82689267 82689464 -41386708 + L1M5 LINE L1 4775 4968 -1178 2 1215 2107 231 54 24 chr9 82689465 82689579 -41386593 + RLTR12A LTR ERVK 1 115 -453 2 1215 3498 98 10 0 chr9 82689579 82690069 -41386103 + L1_Mus3 LINE L1 6143 6637 -1 2 1215 2107 231 54 24 chr9 82690069 82690494 -41385678 + RLTR12A LTR ERVK 116 555 -13 2 1215 180 77 0 0 chr9 82690540 82690566 -41385606 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 2 1215 302 267 97 73 chr9 82690582 82690788 -41385384 + L1M5 LINE L1 5050 5260 -886 2 1215 282 352 118 12 chr9 82690855 82691016 -41385156 - MLT2F LTR ERVL -114 549 372 2 1215 983 192 10 136 chr9 82691167 82691469 -41384703 + RMER3D-int LTR ERVK 1463 1726 -1116 2 1215 582 86 0 0 chr9 82693300 82693381 -41382791 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1215 1095 307 54 24 chr9 82693546 82693970 -41382202 + Lx8 LINE L1 6823 7259 -214 2 1215 268 350 28 37 chr9 82694688 82694795 -41381377 + MLT1H LTR MaLR 209 314 -235 2 1215 1250 161 23 0 chr9 82694828 82695046 -41381126 - URR1B DNA MER1_type -2 223 1 2 1215 3076 65 5 5 chr9 82696148 82696548 -41379624 + MTB LTR MaLR 1 400 0 2 1215 216 0 0 0 chr9 82696701 82696725 -41379447 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2 1215 549 0 0 0 chr9 82696735 82696796 -41379376 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1215 719 280 11 46 chr9 82696823 82697104 -41379068 + Lx9 LINE L1 6952 7222 -422 2 1215 1157 226 54 89 chr9 82698458 82698794 -41377378 - MT2B LTR ERVL 0 601 278 2 1215 1479 9 0 13 chr9 82698797 82699021 -41377151 + (TTC)n Simple_repeat Simple_repeat 1 220 0 2 1215 588 121 0 0 chr9 82699021 82699112 -41377060 + (TCC)n Simple_repeat Simple_repeat 3 93 0 2 1215 272 216 0 0 chr9 82699114 82699165 -41377007 - MT2B LTR ERVL -482 51 1 2 1215 1044 282 52 14 chr9 82699173 82699598 -41376574 - L1MA5 LINE L1 -368 5932 5492 2 1215 297 250 120 0 chr9 82700027 82700120 -41376052 + B4A SINE B4 1 104 -188 2 1215 491 208 8 0 chr9 82700126 82700246 -41375926 + (TG)n Simple_repeat Simple_repeat 2 122 0 2 1215 296 270 78 11 chr9 82700264 82700354 -41375818 + B4A SINE B4 139 234 -58 2 1215 408 249 361 15 chr9 82700477 82700650 -41375522 - MTE2a LTR MaLR -18 401 172 2 1215 243 192 27 27 chr9 82700691 82700766 -41375406 + T-rich Low_complexity Low_complexity 1 75 0 2 1215 252 284 15 0 chr9 82701033 82701100 -41375072 + GA-rich Low_complexity Low_complexity 1 68 0 2 1215 308 289 39 0 chr9 82701367 82701471 -41374701 - RMER15 LTR ERVL -85 490 383 2 1215 21 57 0 0 chr9 82703792 82703827 -41372345 + AT_rich Low_complexity Low_complexity 1 35 0 2 1215 185 154 26 0 chr9 82703928 82703967 -41372205 + GA-rich Low_complexity Low_complexity 2 41 0 2 1215 279 305 11 38 chr9 82704295 82704479 -41371693 + (CTA)n Simple_repeat Simple_repeat 2 180 0 2 1215 238 317 12 35 chr9 82704579 82704752 -41371420 + (CTA)n Simple_repeat Simple_repeat 3 171 0 2 1215 202 311 11 46 chr9 82704850 82705025 -41371147 + (CTA)n Simple_repeat Simple_repeat 3 171 0 2 1215 787 256 14 33 chr9 82706207 82706421 -41369751 - B3 SINE B2 -6 210 1 3 1216 195 314 22 55 chr9 82706624 82706725 -41369447 - MIRc SINE MIR -111 165 65 3 1216 288 0 0 0 chr9 82706731 82706763 -41369409 + (TTGG)n Simple_repeat Simple_repeat 1 32 0 3 1216 414 0 0 0 chr9 82707120 82707166 -41369006 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1216 203 347 25 32 chr9 82707256 82707368 -41368804 + MIR SINE MIR 20 138 -130 3 1216 270 187 54 21 chr9 82707377 82707470 -41368702 - Lx9 LINE L1 -31 7613 7518 3 1216 414 85 0 0 chr9 82707478 82707537 -41368635 + (TGG)n Simple_repeat Simple_repeat 1 59 0 3 1216 899 160 115 49 chr9 82707560 82707803 -41368369 - Lx9 LINE L1 -167 7477 7219 3 1216 246 32 0 0 chr9 82707804 82707835 -41368337 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1216 459 0 0 0 chr9 82708980 82709031 -41367141 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1216 207 0 0 0 chr9 82709350 82709373 -41366799 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1216 4794 81 1 10 chr9 82710281 82711376 -41364796 - L1_Mus2 LINE L1 -319 6247 5162 3 1216 405 39 0 0 chr9 82711378 82711429 -41364743 + (T)n Simple_repeat Simple_repeat 1 51 0 3 1216 21 0 0 0 chr9 82711436 82711457 -41364715 + AT_rich Low_complexity Low_complexity 1 21 0 3 1216 29756 84 8 50 chr9 82711457 82717638 -41358534 - L1Md_F2 LINE L1 -1 6581 680 3 1216 257 32 0 0 chr9 82717976 82718007 -41358165 - URR1B DNA MER1_type -1 224 194 3 1216 2634 126 2 91 chr9 82718007 82718430 -41357742 + RLTR23 LTR ERV1 1 387 -43 3 1216 2855 55 42 10 chr9 82718430 82718814 -41357358 + MTA_Mm LTR MaLR 1 396 0 3 1216 2634 126 2 91 chr9 82718814 82718862 -41357310 + RLTR23 LTR ERV1 388 430 0 3 1216 1115 168 15 26 chr9 82718862 82719053 -41357119 - URR1B DNA MER1_type -29 196 8 3 1216 1730 251 259 12 chr9 82719518 82719722 -41356450 + RMER1C Other Other 38 238 -1104 3 1216 749 92 0 8 chr9 82719722 82719843 -41356329 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 3 1216 1730 251 259 12 chr9 82719843 82720685 -41355487 + RMER1C Other Other 239 1341 -1 3 1216 576 303 95 49 chr9 82721143 82721448 -41354724 + MLT1B LTR MaLR 11 329 -61 3 1216 238 237 130 13 chr9 82721964 82722041 -41354131 + B4 SINE B4 136 221 -71 3 1216 267 324 0 0 chr9 82722053 82722124 -41354048 + RSINE1 SINE B4 9 79 -86 3 1216 492 62 0 0 chr9 82722245 82722309 -41353863 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1216 495 202 0 0 chr9 82722769 82722853 -41353319 + B1_Mur1 SINE Alu 59 142 -7 3 1216 1166 21 7 20 chr9 82724135 82724281 -41351891 - B1_Mm SINE Alu 0 147 4 3 1216 206 200 0 0 chr9 82724400 82724435 -41351737 + C-rich Low_complexity Low_complexity 1 35 0 3 1216 855 248 142 29 chr9 82726079 82726143 -41350029 - MLT1A0 LTR MaLR -17 348 292 3 1216 1966 172 147 21 chr9 82726143 82726613 -41349559 - RMER16 LTR ERVK -4 529 1 3 1216 855 248 142 29 chr9 82726613 82726859 -41349313 - MLT1A0 LTR MaLR -74 291 3 3 1216 1203 244 47 16 chr9 82727137 82727457 -41348715 - Lx6 LINE L1 -1 7459 7130 3 1216 495 0 0 0 chr9 82727458 82727513 -41348659 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1216 886 245 5 24 chr9 82728283 82728496 -41347676 + B3 SINE B2 2 210 -6 3 1216 357 295 28 9 chr9 82729268 82729374 -41346798 - MER20 DNA MER1_type -3 216 109 3 1216 466 301 153 43 chr9 82729397 82729959 -41346213 + L1MC3 LINE L1 5858 6481 -1304 3 1216 206 143 0 28 chr9 82730512 82730548 -41345624 + CT-rich Low_complexity Low_complexity 2 36 0 3 1216 327 311 66 36 chr9 82730644 82730781 -41345391 - MIR SINE MIR -47 215 75 3 1216 4658 185 111 50 chr9 82731831 82732971 -41343201 + RMER12 LTR ERVK 79 1288 -34 3 1216 314 361 9 18 chr9 82733174 82733284 -41342888 - PB1D10 SINE Alu 0 117 9 3 1216 537 303 134 7 chr9 82733805 82734149 -41342023 + L1M3 LINE L1 5293 5681 -559 3 1216 255 274 110 50 chr9 82734162 82734262 -41341910 - Tigger7 DNA MER2_type 0 2491 2386 3 1216 250 226 0 16 chr9 82734323 82734386 -41341786 + L1MEc LINE L1 1750 1811 -4807 3 1216 450 311 72 36 chr9 82734395 82734562 -41341610 + B4A SINE B4 4 176 -116 3 1216 270 0 0 0 chr9 82734751 82734781 -41341391 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1216 384 274 101 19 chr9 82734806 82735014 -41341158 + L1MEc LINE L1 1853 2077 -4541 3 1216 390 276 103 33 chr9 82735085 82735370 -41340802 + L1MEc LINE L1 2217 2583 -3954 3 1216 254 204 239 9 chr9 82735370 82735479 -41340693 + B1F2 SINE Alu 3 136 -13 3 1216 390 338 78 67 chr9 82735479 82735789 -41340383 + L1MEc LINE L1 2584 2898 -3639 3 1216 338 288 67 60 chr9 82735802 82736086 -41340086 + L1MEc LINE L1 4389 4674 -1863 3 1216 423 295 77 38 chr9 82736075 82736336 -41339836 + L1MEc LINE L1 4786 5056 -1481 3 1216 279 0 0 0 chr9 82738385 82738416 -41337756 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1216 501 17 0 0 chr9 82738416 82738473 -41337699 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1216 883 99 57 0 chr9 82738711 82738852 -41337320 + B1_Mur4 SINE Alu 2 150 0 3 1216 23 0 0 0 chr9 82739451 82739474 -41336698 + AT_rich Low_complexity Low_complexity 1 23 0 3 1216 207 0 0 0 chr9 82739649 82739672 -41336500 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 3 1216 521 239 145 0 chr9 82739672 82739789 -41336383 - B1_Mur1 SINE Alu -13 136 3 3 1216 272 286 42 127 chr9 82741091 82741303 -41334869 + RLTR41 LTR ERV1 191 384 -62 3 1216 345 24 0 0 chr9 82741437 82741479 -41334693 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1216 1542 271 106 20 chr9 82741490 82742077 -41334095 - Lx7 LINE L1 -397 7299 6663 3 1216 1102 285 91 12 chr9 82742079 82742576 -41333596 + Lx7 LINE L1 5644 6179 -1517 3 1216 2280 100 25 3 chr9 82742579 82742899 -41333273 + ORR1A2 LTR MaLR 1 327 0 3 1216 3574 131 7 5 chr9 82742899 82743467 -41332705 + ORR1A2-int LTR MaLR 1 569 -1394 3 1216 654 236 23 90 chr9 82743422 82743599 -41332573 + MT2B LTR ERVL 128 292 -309 3 1216 7147 121 46 12 chr9 82743554 82744259 -41331913 + ORR1A2-int LTR MaLR 719 1444 -519 3 1216 4868 46 2 5 chr9 82744259 82744847 -41331325 + LTRIS_Mus LTR ERV1 2 587 0 3 1216 7147 121 46 12 chr9 82744847 82745345 -41330827 + ORR1A2-int LTR MaLR 1445 1962 -1 3 1216 1993 129 10 16 chr9 82745348 82745656 -41330516 + ORR1A2 LTR MaLR 14 319 -8 3 1216 404 236 108 23 chr9 82745659 82745789 -41330383 + Lx7 LINE L1 6179 6319 -1377 3 1216 345 47 0 0 chr9 82745815 82745858 -41330314 + (TATG)n Simple_repeat Simple_repeat 4 46 0 3 1216 240 254 33 17 chr9 82745933 82745993 -41330179 - RSINE1 SINE B4 -29 136 76 3 1216 2360 186 78 44 chr9 82746180 82746649 -41329523 - RMER15 LTR ERVL -14 561 62 3 1216 914 225 29 5 chr9 82746649 82746859 -41329313 + B3 SINE B2 2 216 0 3 1216 2360 186 78 44 chr9 82746859 82746874 -41329298 - RMER15 LTR ERVL -514 61 48 3 1216 597 250 34 20 chr9 82746874 82747021 -41329151 + B1_Mur2 SINE Alu 1 149 0 3 1216 2360 186 78 44 chr9 82747021 82747075 -41329097 - RMER15 LTR ERVL -528 47 4 3 1216 243 61 0 0 chr9 82747569 82747602 -41328570 + (GTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1216 516 194 157 20 chr9 82747766 82747913 -41328259 + B2_Mm2 SINE B2 1 167 -28 3 1216 676 306 38 11 chr9 82748027 82748212 -41327960 - B3A SINE B2 0 198 9 3 1216 252 224 15 15 chr9 82748265 82748333 -41327839 + RLTR19-int LTR ERVK 4042 4109 -2028 3 1216 1904 137 40 143 chr9 82749358 82749835 -41326337 + RLTR23 LTR ERV1 1 428 -2 3 1216 256 245 19 0 chr9 82750410 82750463 -41325709 + ID4_ SINE ID 4 57 -26 3 1216 260 27 27 0 chr9 82751232 82751269 -41324903 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1216 687 160 75 0 chr9 82751281 82751416 -41324756 - B2_Mm2 SINE B2 -42 156 1 3 1216 225 0 0 0 chr9 82751528 82751553 -41324619 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1216 1162 82 0 0 chr9 82751553 82751699 -41324473 - B1_Mus2 SINE Alu 0 147 2 3 1216 217 68 22 22 chr9 82752687 82752732 -41323440 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3 1216 301 263 13 0 chr9 82753154 82753230 -41322942 - PB1 SINE Alu -17 110 34 3 1216 2304 60 10 3 chr9 82753290 82753593 -41322579 - ORR1A0 LTR MaLR 0 346 42 3 1216 559 82 5 13 chr9 82753684 82753775 -41322397 - ORR1A0 LTR MaLR -290 104 1 3 1216 643 279 40 6 chr9 82753866 82754039 -41322133 - B3A SINE B2 -18 180 2 3 1216 198 0 0 0 chr9 82754069 82754091 -41322081 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1216 23 54 0 0 chr9 82754387 82754424 -41321748 + AT_rich Low_complexity Low_complexity 1 37 0 3 1216 441 54 0 0 chr9 82754448 82754504 -41321668 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 3 1216 495 216 335 5 chr9 82755072 82755272 -41320900 + MTC LTR MaLR 143 408 -11 3 1216 1146 225 176 124 chr9 82755272 82756069 -41320103 + Lx9 LINE L1 6776 7613 -31 3 1216 22 56 0 0 chr9 82756080 82756116 -41320056 + AT_rich Low_complexity Low_complexity 1 36 0 3 1216 248 0 31 0 chr9 82757087 82757119 -41319053 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1216 277 267 121 45 chr9 82757869 82758026 -41318146 - L1M4 LINE L1 -5788 754 586 3 1216 240 59 0 0 chr9 82758933 82758967 -41317205 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1216 1205 54 0 0 chr9 82758967 82759114 -41317058 - B1_Mm SINE Alu 0 147 1 3 1216 407 283 37 19 chr9 82761969 82762077 -41314095 - ID_B1 SINE B4 -22 202 93 3 1216 332 316 0 12 chr9 82762007 82762087 -41314085 - PB1D10 SINE Alu -37 80 2 3 1216 21 107 0 0 chr9 82762805 82762889 -41313283 + AT_rich Low_complexity Low_complexity 1 84 0 3 1216 292 300 41 8 chr9 82766817 82766938 -41309234 + L1_Rod LINE L1 2261 2385 -3462 3 1216 279 0 0 0 chr9 82767082 82767113 -41309059 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1216 1223 281 96 18 chr9 82767151 82767219 -41308953 + Lx8 LINE L1 6189 6263 -1210 3 1216 209 30 61 0 chr9 82767219 82767252 -41308920 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1216 1223 281 96 18 chr9 82767252 82767733 -41308439 + Lx8 LINE L1 6264 6781 -692 3 1216 2368 137 158 69 chr9 82767736 82768370 -41307802 + RMER6C LTR ERVK 1 690 0 3 1216 251 369 67 15 chr9 82768370 82768505 -41307667 - RSINE1 SINE B4 -13 152 11 3 1216 25 0 0 0 chr9 82770560 82770585 -41305587 + AT_rich Low_complexity Low_complexity 1 25 0 3 1216 362 228 671 0 chr9 82771155 82771283 -41304889 + B3A SINE B2 1 214 -2 3 1216 21 36 0 0 chr9 82771374 82771402 -41304770 + AT_rich Low_complexity Low_complexity 1 28 0 3 1216 302 303 101 133 chr9 82771548 82772013 -41304159 - L1M5 LINE L1 -3010 3136 2687 3 1216 253 257 14 0 chr9 82772879 82772949 -41303223 - Lx5 LINE L1 -69 6981 6911 3 1216 1035 211 215 13 chr9 82773119 82773468 -41302704 + MTD LTR MaLR 1 405 -14 3 1216 509 223 71 9 chr9 82774066 82774179 -41301993 - B1_Mur1 SINE Alu -21 128 9 4 1216 509 271 88 0 chr9 82774346 82774516 -41301656 - B4A SINE B4 -105 187 3 4 1216 22 35 0 0 chr9 82774789 82774818 -41301354 + AT_rich Low_complexity Low_complexity 1 29 0 4 1216 328 313 160 39 chr9 82775996 82776139 -41300033 + B3A SINE B2 2 164 -34 4 1216 273 29 0 0 chr9 82776139 82776173 -41299999 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 4 1216 328 313 160 39 chr9 82776173 82776185 -41299987 + B3A SINE B2 165 176 -22 4 1216 231 36 0 0 chr9 82776210 82776238 -41299934 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1216 22 0 0 0 chr9 82776568 82776590 -41299582 + AT_rich Low_complexity Low_complexity 1 22 0 4 1216 526 186 65 0 chr9 82776747 82776871 -41299301 - URR1A DNA MER1_type -10 216 85 4 1216 28 0 0 0 chr9 82776929 82776957 -41299215 + AT_rich Low_complexity Low_complexity 1 28 0 4 1216 272 269 53 11 chr9 82777236 82777330 -41298842 + PB1D7 SINE Alu 5 102 -18 4 1216 228 232 304 0 chr9 82777350 82777419 -41298753 - PB1 SINE Alu -14 113 24 4 1216 970 223 110 11 chr9 82777628 82777891 -41298281 + Lx5 LINE L1 6755 7043 -7 4 1216 459 0 0 0 chr9 82777901 82777952 -41298220 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 4 1216 466 277 27 0 chr9 82777953 82778065 -41298107 + B3 SINE B2 93 207 -9 4 1216 438 328 8 8 chr9 82778126 82778252 -41297920 - B1_Mur1 SINE Alu -16 133 8 4 1216 412 179 119 20 chr9 82779671 82779780 -41296392 + B1_Mur2 SINE Alu 35 149 0 4 1216 251 299 68 58 chr9 82780589 82780692 -41295480 + BC1_Mm scRNA scRNA 1 104 -48 4 1216 183 292 117 45 chr9 82780919 82781030 -41295142 + L4 LINE RTE 1262 1380 -649 4 1216 1013 233 0 5 chr9 82782274 82782485 -41293687 - B3 SINE B2 -6 210 1 4 1216 440 253 0 10 chr9 82782488 82782501 -41293671 - B1F SINE Alu 0 149 137 4 1216 240 35 0 0 chr9 82782501 82782530 -41293642 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1216 440 253 0 10 chr9 82782530 82782612 -41293560 - B1F SINE Alu -13 136 55 4 1216 23 0 0 0 chr9 82782775 82782798 -41293374 + AT_rich Low_complexity Low_complexity 1 23 0 4 1216 236 313 85 20 chr9 82783497 82783650 -41292522 + RSINE1 SINE B4 3 165 0 4 1216 21 57 0 0 chr9 82785805 82785840 -41290332 + AT_rich Low_complexity Low_complexity 1 35 0 4 1216 1481 67 0 5 chr9 82785958 82786154 -41290018 - B2_Mm2 SINE B2 0 195 1 4 1216 484 306 48 65 chr9 82787296 82787527 -41288645 - B4A SINE B4 -9 283 57 4 1216 944 24 0 0 chr9 82787571 82787694 -41288478 - B1_Mus1 SINE Alu -24 124 2 4 1216 422 235 225 18 chr9 82787694 82787750 -41288422 - B4 SINE B4 -201 91 1 4 1216 21 36 0 0 chr9 82787800 82787828 -41288344 + AT_rich Low_complexity Low_complexity 1 28 0 4 1216 265 131 33 0 chr9 82787953 82788014 -41288158 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 4 1216 23 33 0 0 chr9 82788197 82788227 -41287945 + AT_rich Low_complexity Low_complexity 1 30 0 4 1216 22 35 0 0 chr9 82788366 82788395 -41287777 + AT_rich Low_complexity Low_complexity 1 29 0 4 1216 767 251 25 5 chr9 82788557 82788753 -41287419 - B3 SINE B2 -15 201 2 4 1216 22 0 0 0 chr9 82789093 82789115 -41287057 + AT_rich Low_complexity Low_complexity 1 22 0 4 1216 412 218 0 44 chr9 82789266 82789357 -41286815 + B1_Mus2 SINE Alu 61 147 0 4 1216 392 255 10 41 chr9 82790262 82790360 -41285812 - ID_B1 SINE B4 -26 198 104 4 1216 336 336 79 16 chr9 82791120 82791247 -41284925 + MER58A DNA MER1_type 3 137 -87 4 1216 556 281 30 6 chr9 82791280 82791445 -41284727 + Lx9 LINE L1 6624 6792 -852 4 1216 241 245 0 0 chr9 82791710 82791763 -41284409 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1216 489 140 80 0 chr9 82792101 82792202 -41283970 + PB1D9 SINE Alu 5 144 -6 4 1216 27 0 0 0 chr9 82793080 82793107 -41283065 + AT_rich Low_complexity Low_complexity 1 27 0 4 1216 457 279 90 0 chr9 82793141 82793263 -41282909 - B1_Mur2 SINE Alu -16 133 1 4 1216 24 0 0 0 chr9 82793336 82793360 -41282812 + AT_rich Low_complexity Low_complexity 1 24 0 4 1216 2191 101 22 70 chr9 82794854 82795225 -41280947 - Lx LINE L1 -19 6635 6283 4 1216 394 252 72 0 chr9 82795293 82795404 -41280768 - PB1D9 SINE Alu 0 120 2 4 1216 236 312 51 13 chr9 82795404 82795482 -41280690 - ID_B1 SINE B4 -60 164 84 4 1216 280 267 0 0 chr9 82795423 82795483 -41280689 - B1_Mur4 SINE Alu -89 61 2 4 1216 249 254 0 0 chr9 82797028 82797083 -41279089 - BC1_Mm scRNA scRNA -56 96 42 4 1216 647 225 101 5 chr9 82797784 82797972 -41278200 - B3 SINE B2 -6 210 5 4 1216 28 61 0 0 chr9 82797976 82798025 -41278147 + AT_rich Low_complexity Low_complexity 1 49 0 4 1216 194 119 0 45 chr9 82798061 82798105 -41278067 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 1216 480 139 0 0 chr9 82799041 82799120 -41277052 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1216 343 342 68 0 chr9 82799525 82799554 -41276618 + B4 SINE B4 55 91 -201 4 1216 506 248 0 10 chr9 82799554 82799656 -41276516 + B1_Mm SINE Alu 1 101 -46 4 1216 246 256 0 71 chr9 82799824 82799908 -41276264 - B3 SINE B2 -36 180 103 4 1216 1368 100 0 5 chr9 82800129 82800320 -41275852 + B2_Mm2 SINE B2 1 190 -5 4 1216 363 384 62 11 chr9 82801232 82801506 -41274666 + Lx8 LINE L1 7175 7462 -11 4 1216 260 325 28 73 chr9 82801588 82801767 -41274405 - L1MD LINE L1 -642 5600 5430 4 1216 516 332 31 51 chr9 82801794 82802048 -41274124 + B4A SINE B4 44 292 0 4 1216 25 0 0 0 chr9 82802547 82802572 -41273600 + AT_rich Low_complexity Low_complexity 1 25 0 4 1216 1015 83 8 0 chr9 82802766 82802899 -41273273 + B1_Mus2 SINE Alu 2 135 -12 4 1216 201 74 0 0 chr9 82802900 82802927 -41273245 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1216 225 399 35 21 chr9 82803861 82804002 -41272170 - L2a LINE L2 -3 3423 3281 4 1216 610 183 15 38 chr9 82804493 82804624 -41271548 + B3A SINE B2 1 128 -70 4 1216 220 364 59 29 chr9 82804624 82804663 -41271509 + ID_B1 SINE B4 1 175 -49 4 1216 664 158 175 0 chr9 82804845 82804965 -41271207 + B1_Mur4 SINE Alu 1 141 -9 4 1216 207 0 0 0 chr9 82806661 82806684 -41269488 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1216 608 232 14 7 chr9 82806720 82806859 -41269313 + B1_Mur1 SINE Alu 1 140 -9 4 1216 227 356 0 0 chr9 82807952 82808011 -41268161 - tRNA-Ala-GCY_ tRNA tRNA -14 61 3 4 1216 477 0 0 0 chr9 82808581 82808634 -41267538 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1216 570 214 41 51 chr9 82808646 82808796 -41267376 - B3A SINE B2 -32 161 1 4 1216 2293 226 79 13 chr9 82810993 82811526 -41264646 + ORR1D1-int LTR MaLR 803 1370 0 4 1216 936 198 47 26 chr9 82811574 82811807 -41264365 + ORR1D1 LTR MaLR 135 372 -2 4 1216 23 33 0 0 chr9 82811996 82812026 -41264146 + AT_rich Low_complexity Low_complexity 1 30 0 4 1216 513 0 0 0 chr9 82813098 82813155 -41263017 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1216 22 35 0 0 chr9 82813503 82813532 -41262640 + AT_rich Low_complexity Low_complexity 1 29 0 4 1216 21 36 0 0 chr9 82814354 82814382 -41261790 + AT_rich Low_complexity Low_complexity 1 28 0 4 1216 24 53 0 0 chr9 82815227 82815265 -41260907 + AT_rich Low_complexity Low_complexity 1 38 0 4 1216 512 230 7 0 chr9 82815586 82815721 -41260451 + (TATATG)n Simple_repeat Simple_repeat 2 137 0 4 1216 449 236 11 0 chr9 82818378 82818467 -41257705 - ID_B1 SINE B4 -19 205 116 4 1216 25 31 0 0 chr9 82821655 82821687 -41254485 + AT_rich Low_complexity Low_complexity 1 32 0 4 1216 562 262 93 45 chr9 82824462 82824730 -41251442 - B4A SINE B4 -10 282 2 4 1216 28 0 0 0 chr9 82825127 82825155 -41251017 + AT_rich Low_complexity Low_complexity 1 28 0 4 1216 458 250 25 0 chr9 82825158 82825278 -41250894 + B1F SINE Alu 22 144 -5 4 1216 490 234 17 43 chr9 82825428 82825544 -41250628 - B3 SINE B2 -2 214 102 4 1216 383 312 65 39 chr9 82828271 82828501 -41247671 + MER2 DNA MER2_type 101 336 -9 4 1216 703 270 62 0 chr9 82829181 82829359 -41246813 - B3 SINE B2 -26 190 2 4 1216 264 286 0 13 chr9 82829417 82829495 -41246677 + ID_B1 SINE B4 146 222 -2 4 1216 587 260 29 24 chr9 82829518 82829723 -41246449 + B3 SINE B2 1 206 -10 4 1216 1226 34 0 0 chr9 82829756 82829904 -41246268 + B1_Mus1 SINE Alu 1 148 0 4 1216 21 36 0 0 chr9 82830223 82830251 -41245921 + AT_rich Low_complexity Low_complexity 1 28 0 4 1216 245 279 0 0 chr9 82831722 82831790 -41244382 + A-rich Low_complexity Low_complexity 1 68 0 4 1216 24 37 0 53 chr9 82832480 82832498 -41243674 + AT_rich Low_complexity Low_complexity 1 17 0 4 1216 1145 62 0 7 chr9 82832498 82832645 -41243527 + B1_Mus1 SINE Alu 2 147 -1 4 1216 24 37 0 53 chr9 82832645 82832683 -41243489 + AT_rich Low_complexity Low_complexity 1 37 0 4 1216 234 320 59 49 chr9 82832778 82832880 -41243292 + Charlie24 DNA MER1_type 573 675 -1775 4 1216 333 0 0 0 chr9 82833703 82833740 -41242432 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 4 1216 189 94 0 0 chr9 82833974 82834006 -41242166 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 4 1216 237 254 0 17 chr9 82834009 82834069 -41242103 - L1MC4 LINE L1 -139 7903 7845 4 1216 305 307 132 16 chr9 82834348 82834530 -41241642 - L1MC4 LINE L1 -582 7460 7258 4 1216 569 301 89 47 chr9 82834742 82835000 -41241172 - MLT1A0 LTR MaLR 0 365 97 4 1216 191 62 62 0 chr9 82835529 82835561 -41240611 + (TATG)n Simple_repeat Simple_repeat 2 35 0 4 1216 334 301 3 36 chr9 82835760 82835853 -41240319 + PB1D10 SINE Alu 2 94 -55 5 1216 24 0 0 0 chr9 82836027 82836051 -41240121 + AT_rich Low_complexity Low_complexity 1 24 0 5 1216 342 215 75 0 chr9 82836489 82836582 -41239590 - PB1D9 SINE Alu -20 100 1 5 1216 232 236 0 127 chr9 82836536 82836599 -41239573 - B4A SINE B4 -161 131 77 5 1217 463 274 133 6 chr9 82837583 82837748 -41238424 + B3A SINE B2 13 198 0 5 1217 529 238 0 19 chr9 82837938 82838041 -41238131 + B3 SINE B2 110 210 -6 5 1217 1395 256 57 17 chr9 82838152 82838616 -41237556 - Lx5 LINE L1 -62 7398 6517 5 1217 22 56 0 0 chr9 82839258 82839294 -41236878 + AT_rich Low_complexity Low_complexity 1 36 0 5 1217 222 192 0 0 chr9 82840277 82840329 -41235843 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1217 24 32 0 0 chr9 82841847 82841878 -41234294 + AT_rich Low_complexity Low_complexity 1 31 0 5 1217 1397 245 12 37 chr9 82842343 82842665 -41233507 + MTE2a LTR MaLR 52 365 -14 5 1217 324 331 109 34 chr9 82842681 82843048 -41233124 + L2a LINE L2 2927 3323 -103 5 1217 1452 244 40 60 chr9 82843732 82844129 -41232043 - Lx6 LINE L1 -24 7436 7048 5 1217 1773 180 91 0 chr9 82844384 82844723 -41231449 + ORR1C2 LTR MaLR 15 384 0 5 1217 4680 211 103 34 chr9 82844725 82846003 -41230169 + ORR1C2-int LTR MaLR 5 1370 0 5 1217 1696 196 33 41 chr9 82846015 82846377 -41229795 + ORR1C2 LTR MaLR 24 382 -2 5 1217 932 126 0 0 chr9 82846908 82847043 -41229129 - B1_Mus1 SINE Alu -9 139 5 5 1217 207 276 17 0 chr9 82848112 82848170 -41228002 + (CATA)n Simple_repeat Simple_repeat 4 62 0 5 1217 303 310 26 9 chr9 82848689 82848803 -41227369 + PB1D10 SINE Alu 2 117 0 5 1217 215 346 111 91 chr9 82849725 82850075 -41226097 - L2c LINE L2 -11 3376 3020 5 1217 473 324 47 0 chr9 82850087 82850235 -41225937 + RSINE1 SINE B4 3 157 -8 5 1217 438 284 89 19 chr9 82850600 82850758 -41225414 + ID_B1 SINE B4 1 169 -55 5 1217 252 278 80 30 chr9 82853751 82853851 -41222321 + ID_B1 SINE B4 21 125 -99 5 1217 23 54 0 0 chr9 82854637 82854674 -41221498 + AT_rich Low_complexity Low_complexity 1 37 0 5 1217 779 216 7 0 chr9 82854740 82854879 -41221293 - B1_Mus2 SINE Alu -6 141 2 5 1217 324 283 8 102 chr9 82854778 82854896 -41221276 - MT2B LTR ERVL -343 258 152 5 1217 262 279 169 60 chr9 82855157 82855360 -41220812 + Charlie1b DNA MER1_type 83 296 -227 5 1217 1143 68 0 7 chr9 82855360 82855509 -41220663 + B1_Mus1 SINE Alu 1 148 0 5 1217 262 279 169 60 chr9 82855509 82855637 -41220535 + Charlie1b DNA MER1_type 297 449 -74 5 1217 332 257 0 0 chr9 82855818 82855888 -41220284 - ID4_ SINE ID -9 74 5 5 1217 222 214 0 0 chr9 82856054 82856096 -41220076 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 5 1217 1214 47 0 7 chr9 82856172 82856321 -41219851 + B1_Mus1 SINE Alu 1 148 0 5 1217 199 29 0 79 chr9 82856321 82856359 -41219813 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 5 1217 25 31 0 0 chr9 82856580 82856612 -41219560 + AT_rich Low_complexity Low_complexity 1 32 0 5 1217 408 196 131 14 chr9 82856680 82856825 -41219347 + L1MA6 LINE L1 6139 6300 0 5 1217 494 317 42 36 chr9 82856831 82856998 -41219174 + B4A SINE B4 5 172 -120 5 1217 189 147 0 0 chr9 82857099 82857133 -41219039 + (CGGA)n Simple_repeat Simple_repeat 2 35 0 5 1217 252 0 0 0 chr9 82857133 82857161 -41219011 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1217 779 253 34 22 chr9 82857261 82857439 -41218733 - B3A SINE B2 -4 194 15 5 1217 204 184 0 0 chr9 82859571 82859620 -41216552 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1217 23 0 0 0 chr9 82859758 82859781 -41216391 + AT_rich Low_complexity Low_complexity 1 23 0 5 1217 741 69 0 38 chr9 82861503 82861608 -41214564 + B1_Mus2 SINE Alu 42 142 -5 5 1217 311 281 64 86 chr9 82861504 82861691 -41214481 + RLTR25B LTR ERVK 444 626 -402 5 1217 1181 138 5 0 chr9 82862593 82862782 -41213390 + B2_Mm1t SINE B2 1 190 -3 5 1217 365 301 168 29 chr9 82863109 82863246 -41212926 + B4 SINE B4 48 203 -89 5 1217 206 174 0 21 chr9 82863639 82863686 -41212486 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 5 1217 938 245 112 48 chr9 82864106 82864419 -41211753 + MTD LTR MaLR 42 374 -45 5 1217 229 321 87 67 chr9 82864984 82865134 -41211038 + B4 SINE B4 69 221 -71 5 1217 413 297 78 0 chr9 82865011 82865139 -41211033 + B1F SINE Alu 12 149 0 5 1217 445 216 146 67 chr9 82865195 82865359 -41210813 + ID_B1 SINE B4 14 190 -34 5 1217 31 0 0 0 chr9 82865363 82865394 -41210778 + AT_rich Low_complexity Low_complexity 1 31 0 5 1217 189 0 0 0 chr9 82865472 82865493 -41210679 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1217 25 0 0 0 chr9 82867687 82867712 -41208460 + AT_rich Low_complexity Low_complexity 1 25 0 5 1217 203 103 0 49 chr9 82867932 82867973 -41208199 + (CCG)n Simple_repeat Simple_repeat 3 41 0 5 1217 33 56 0 0 chr9 82868083 82868137 -41208035 + GC_rich Low_complexity Low_complexity 1 54 0 5 1217 53 81 0 0 chr9 82868406 82868529 -41207643 + GC_rich Low_complexity Low_complexity 1 123 0 5 1217 225 230 11 22 chr9 82868592 82868681 -41207491 + C-rich Low_complexity Low_complexity 3 90 0 5 1217 42 48 0 0 chr9 82868789 82868852 -41207320 + GC_rich Low_complexity Low_complexity 1 63 0 5 1217 22 0 0 0 chr9 82869151 82869173 -41206999 + GC_rich Low_complexity Low_complexity 1 22 0 5 1217 198 143 0 0 chr9 82869321 82869356 -41206816 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 5 1217 216 0 0 0 chr9 82869755 82869779 -41206393 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1217 206 105 26 0 chr9 82871996 82872034 -41204138 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1217 207 0 0 0 chr9 82872348 82872371 -41203801 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 5 1217 21 36 0 0 chr9 82874248 82874276 -41201896 + AT_rich Low_complexity Low_complexity 1 28 0 5 1217 225 305 0 17 chr9 82874712 82874772 -41201400 + polypyrimidine Low_complexity Low_complexity 4 62 0 5 1217 517 281 52 7 chr9 82876172 82876326 -41199846 + RSINE1 SINE B4 3 163 -2 5 1217 264 279 0 14 chr9 82876454 82876523 -41199649 + ID4 SINE ID 2 69 -14 5 1217 24 32 0 0 chr9 82876653 82876684 -41199488 + AT_rich Low_complexity Low_complexity 1 31 0 5 1217 234 0 0 0 chr9 82877016 82877042 -41199130 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1217 195 42 0 0 chr9 82877056 82877080 -41199092 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 5 1217 1090 291 76 18 chr9 82877113 82877495 -41198677 - MTD LTR MaLR -14 405 2 5 1217 317 130 0 0 chr9 82878119 82878173 -41197999 + B3A SINE B2 1 54 -144 5 1217 2473 128 192 0 chr9 82878192 82878646 -41197526 + RMER4B LTR ERVK 43 583 -2 5 1217 392 276 10 20 chr9 82878646 82878743 -41197429 + B3 SINE B2 49 144 -72 5 1217 3306 257 94 55 chr9 82878746 82880065 -41196107 - Lx8 LINE L1 -1477 5996 4631 5 1217 28 29 0 0 chr9 82880072 82880107 -41196065 + AT_rich Low_complexity Low_complexity 1 35 0 5 1217 246 238 31 16 chr9 82880528 82880592 -41195580 + ORR1E LTR MaLR 232 296 -63 5 1217 218 160 0 20 chr9 82880604 82880655 -41195517 + GA-rich Low_complexity Low_complexity 3 52 0 5 1217 220 354 62 0 chr9 82880732 82880828 -41195344 + MIRc SINE MIR 106 207 -61 5 1217 405 292 54 54 chr9 82880846 82881049 -41195123 - MIR SINE MIR -48 214 12 5 1217 190 264 0 36 chr9 82881083 82881138 -41195034 + L2c LINE L2 3323 3375 -12 5 1217 8848 66 4 1 chr9 82881481 82883334 -41192838 - L1_Mus2 LINE L1 0 6566 4708 5 1217 1015 240 62 4 chr9 82883371 82883597 -41192575 - B4 SINE B4 -51 241 3 5 1217 245 333 0 45 chr9 82883893 82883981 -41192191 + B4 SINE B4 2 85 -207 5 1217 465 34 0 0 chr9 82884001 82884060 -41192112 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1217 279 0 0 0 chr9 82884060 82884090 -41192082 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1217 674 259 6 60 chr9 82884968 82885136 -41191036 + B3A SINE B2 2 160 -38 5 1217 324 0 0 0 chr9 82885144 82885180 -41190992 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1217 246 273 52 0 chr9 82885397 82885474 -41190698 + MLT1K LTR MaLR 512 592 -3 5 1217 323 290 50 34 chr9 82885525 82885764 -41190408 - L1M5 LINE L1 -348 5814 5572 5 1217 2303 132 92 3 chr9 82885862 82886241 -41189931 - MTC LTR MaLR -8 413 1 5 1217 274 139 0 0 chr9 82886246 82886295 -41189877 - L1M5 LINE L1 -882 5451 5403 5 1217 392 138 0 98 chr9 82886405 82886504 -41189668 + B1_Mur4 SINE Alu 2 84 -66 5 1217 737 210 103 144 chr9 82886887 82887199 -41188973 - RLTR20B2 LTR ERVK -261 299 1 5 1217 1118 256 103 56 chr9 82887219 82887687 -41188485 - RLTR12B LTR ERVK -29 499 10 5 1217 422 214 11 0 chr9 82887695 82887784 -41188388 - MYSERV-int LTR ERVK 0 6550 6461 5 1217 2039 152 124 7 chr9 82887768 82888171 -41188001 - MYSERV6-int LTR ERVK -256 8703 8254 5 1217 842 335 63 19 chr9 82888393 82888664 -41187508 + MTE2b LTR MaLR 6 288 -91 5 1217 3237 243 157 25 chr9 82888705 82889645 -41186527 - RMER1C Other Other 0 1342 252 5 1217 489 17 0 0 chr9 82889645 82889703 -41186469 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1217 3237 243 157 25 chr9 82889703 82889900 -41186272 - RMER1C Other Other -1091 251 55 5 1217 527 260 0 0 chr9 82890069 82890192 -41185980 - RMER1B Other Other -351 715 593 5 1217 617 135 32 0 chr9 82890211 82890337 -41185835 + CT-rich Low_complexity Low_complexity 2 131 0 5 1217 740 176 18 6 chr9 82890350 82890521 -41185651 + CT-rich Low_complexity Low_complexity 2 174 0 5 1217 277 93 18 18 chr9 82890569 82890624 -41185548 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 1217 580 293 95 20 chr9 82890664 82891064 -41185108 - L1MEc LINE L1 -2243 4076 3647 5 1217 22 0 0 0 chr9 82891075 82891097 -41185075 + AT_rich Low_complexity Low_complexity 1 22 0 5 1217 317 406 41 0 chr9 82891173 82891343 -41184829 - L1MEc LINE L1 -6080 320 144 5 1217 295 264 152 8 chr9 82891357 82891465 -41184707 - B1F SINE Alu -1 116 2 6 1217 303 305 105 0 chr9 82891465 82891570 -41184602 - L1MEc LINE L1 -6249 151 36 5 1217 462 36 0 0 chr9 82892361 82892417 -41183755 + (TAA)n Simple_repeat Simple_repeat 2 57 0 6 1217 330 252 0 0 chr9 82892429 82892544 -41183628 + (TG)n Simple_repeat Simple_repeat 2 116 0 6 1217 21 36 0 0 chr9 82893097 82893125 -41183047 + AT_rich Low_complexity Low_complexity 1 28 0 6 1217 226 222 0 0 chr9 82893639 82893684 -41182488 - MTEb LTR MaLR 0 379 335 6 1217 334 280 38 53 chr9 82893684 82893816 -41182356 + B1F SINE Alu 1 130 -19 6 1217 192 179 0 0 chr9 82893839 82893878 -41182294 + G-rich Low_complexity Low_complexity 3 41 0 6 1217 187 339 17 0 chr9 82894229 82894288 -41181884 + MIRb SINE MIR 23 82 -186 6 1217 429 264 60 60 chr9 82894455 82894604 -41181568 + B1F SINE Alu 1 149 0 6 1217 439 368 214 27 chr9 82894742 82895182 -41180990 - LTR16D1 LTR ERVL -26 649 128 6 1217 387 260 0 0 chr9 82895522 82895595 -41180577 + RSINE1 SINE B4 76 148 -17 6 1217 1074 226 0 32 chr9 82896492 82896711 -41179461 + B3 SINE B2 3 214 -2 6 1217 237 33 0 0 chr9 82896833 82896863 -41179309 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1217 21 36 0 0 chr9 82897786 82897814 -41178358 + AT_rich Low_complexity Low_complexity 1 28 0 6 1217 608 239 92 27 chr9 82898230 82898415 -41177757 + B3A SINE B2 1 197 -1 6 1217 427 216 258 61 chr9 82898448 82898611 -41177561 + B3A SINE B2 3 197 -1 6 1217 659 285 69 135 chr9 82898628 82898874 -41177298 - MTC LTR MaLR -52 369 141 6 1217 824 192 7 27 chr9 82898874 82899024 -41177148 + B1_Mus2 SINE Alu 1 147 0 6 1217 659 285 69 135 chr9 82899024 82899170 -41177002 - MTC LTR MaLR -281 140 3 6 1217 259 339 0 0 chr9 82899215 82899327 -41176845 - MusHAL1 LINE L1 -317 2395 2284 6 1217 1207 121 30 0 chr9 82899327 82899526 -41176646 + Lx3_Mus LINE L1 6793 6997 -12 6 1217 207 108 27 0 chr9 82899526 82899563 -41176609 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 6 1217 263 350 79 81 chr9 82900127 82900606 -41175566 + Kanga11a DNA Tc2 456 933 -37 6 1217 25 31 0 0 chr9 82900841 82900873 -41175299 + AT_rich Low_complexity Low_complexity 1 32 0 6 1217 262 329 26 0 chr9 82901730 82901806 -41174366 + B4A SINE B4 78 155 -137 6 1217 490 294 22 0 chr9 82901746 82901882 -41174290 + B1F SINE Alu 9 147 -2 6 1217 3266 139 18 57 chr9 82902031 82902628 -41173544 + RMER15 LTR ERVL 2 575 0 6 1217 194 411 44 0 chr9 82902937 82903027 -41173145 - MIRc SINE MIR -174 94 1 6 1217 222 379 22 50 chr9 82903073 82903212 -41172960 + MIRb SINE MIR 68 202 -66 6 1217 1034 263 62 101 chr9 82903580 82903922 -41172250 + ORR1D2 LTR MaLR 1 334 -36 6 1217 6491 73 50 5 chr9 82903922 82904811 -41171361 + RLTR13B3 LTR ERVK 1 929 0 6 1217 1034 263 62 101 chr9 82904811 82904853 -41171319 + ORR1D2 LTR MaLR 335 370 0 6 1217 22 35 0 0 chr9 82905112 82905141 -41171031 + AT_rich Low_complexity Low_complexity 1 29 0 6 1217 4341 127 19 44 chr9 82906087 82906837 -41169335 - Lx4B LINE L1 -93 6965 6235 6 1217 242 250 16 187 chr9 82906862 82906985 -41169187 + Charlie1 DNA MER1_type 1503 1604 -1177 6 1217 691 255 7 7 chr9 82906989 82907131 -41169041 + B1_Mur1 SINE Alu 1 142 -7 6 1217 215 174 0 21 chr9 82907214 82907261 -41168911 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 6 1217 1047 274 196 33 chr9 82907301 82907935 -41168237 + Charlie1 DNA MER1_type 1620 2356 -425 6 1217 310 253 40 0 chr9 82907984 82908059 -41168113 - PB1D10 SINE Alu 0 117 40 6 1217 586 248 20 41 chr9 82908216 82908363 -41167809 - B1_Mur4 SINE Alu -1 149 6 6 1217 245 287 20 112 chr9 82908331 82908527 -41167645 - RMER15 LTR ERVL -123 452 275 6 1217 317 276 18 101 chr9 82908363 82908383 -41167789 - ID_B1 SINE B4 0 222 70 6 1217 227 333 41 49 chr9 82908551 82908604 -41167568 - RMER15 LTR ERVL -451 124 71 6 1217 207 0 0 0 chr9 82908604 82908627 -41167545 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 1217 227 333 41 49 chr9 82908627 82908696 -41167476 - RMER15 LTR ERVL -505 70 4 6 1217 757 265 99 30 chr9 82908700 82909034 -41167138 + Charlie1 DNA MER1_type 2423 2779 -2 6 1217 23 0 0 0 chr9 82909170 82909193 -41166979 + AT_rich Low_complexity Low_complexity 1 23 0 6 1217 790 123 24 32 chr9 82909194 82909320 -41166852 - B1_Mur3 SINE Alu -4 145 21 6 1217 391 304 100 12 chr9 82909718 82909888 -41166284 - L2 LINE L2 -727 2692 2508 6 1217 404 298 157 33 chr9 82909953 82910290 -41165882 + L2a LINE L2 1211 1589 -1830 6 1217 1022 349 113 26 chr9 82910473 82911214 -41164958 + L2a LINE L2 2361 3167 -259 6 1217 315 298 85 50 chr9 82912065 82912323 -41163849 + HAL1 LINE L1 1 267 -2240 6 1217 29 28 0 0 chr9 82913162 82913198 -41162974 + AT_rich Low_complexity Low_complexity 1 36 0 6 1217 1278 239 101 10 chr9 82913198 82913604 -41162568 - Lx5 LINE L1 -743 6307 5865 6 1217 405 268 66 59 chr9 82913858 82914144 -41162028 + RLTR17 LTR ERVK 116 441 -251 6 1217 7394 21 5 0 chr9 82914444 82915338 -41160834 - L1Md_F3 LINE L1 0 6584 5687 6 1217 2772 35 9 0 chr9 82915338 82915680 -41160492 + L1Md_F3 LINE L1 5347 5691 -192 6 1217 266 333 148 20 chr9 82916043 82916629 -41159543 + L1MEc LINE L1 255 915 -5485 6 1217 347 269 75 75 chr9 82917294 82917507 -41158665 + L1MEc LINE L1 1633 1845 -4555 6 1217 208 95 48 0 chr9 82918041 82918083 -41158089 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 6 1217 408 40 0 0 chr9 82918144 82918194 -41157978 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1217 534 174 0 128 chr9 82918209 82918334 -41157838 - ORR1C2 LTR MaLR -274 110 2 6 1217 267 114 0 0 chr9 82918394 82918438 -41157734 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1217 865 189 0 0 chr9 82918513 82918661 -41157511 - B1_Mur4 SINE Alu -1 149 2 6 1217 752 236 0 7 chr9 82918761 82918906 -41157266 - B1_Mur4 SINE Alu -1 149 6 6 1217 588 154 8 25 chr9 82918928 82919048 -41157124 - Lx7 LINE L1 -56 7640 7523 6 1217 410 274 98 56 chr9 82919069 82919253 -41156919 - RMER2 LTR ERV1 -29 538 336 6 1217 414 227 17 74 chr9 82919559 82919735 -41156437 - Lx7 LINE L1 -174 7522 7357 6 1217 285 253 0 0 chr9 82919763 82919838 -41156334 - Lx7 LINE L1 -329 7367 7293 6 1217 342 306 47 31 chr9 82920143 82920271 -41155901 + B1F1 SINE Alu 16 145 -4 6 1217 252 333 13 0 chr9 82920281 82920359 -41155813 + ID4_ SINE ID 2 80 -3 6 1217 675 280 52 21 chr9 82920380 82920573 -41155599 + B3A SINE B2 17 215 -1 6 1217 374 314 115 16 chr9 82920815 82921138 -41155034 + L1MEc LINE L1 2672 3026 -3293 6 1217 186 103 0 0 chr9 82921174 82921203 -41154969 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1217 747 220 0 28 chr9 82921244 82921389 -41154783 - B1_Mur1 SINE Alu -7 142 2 6 1217 2593 82 62 5 chr9 82921410 82921780 -41154392 - RLTR13C2 LTR ERVK 0 808 418 6 1217 1796 43 0 9 chr9 82921779 82922011 -41154161 - RLTR13C2 LTR ERVK -578 230 1 6 1217 25 51 0 0 chr9 82922156 82922195 -41153977 + AT_rich Low_complexity Low_complexity 1 39 0 6 1217 219 220 0 0 chr9 82922300 82922350 -41153822 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1217 1373 276 60 39 chr9 82922352 82922922 -41153250 - Lx9 LINE L1 -127 7517 6936 6 1217 3512 251 56 23 chr9 82922941 82924393 -41151779 - L1_Rod LINE L1 -2890 2957 1673 6 1217 1791 181 44 81 chr9 82924396 82924739 -41151433 - MTD LTR MaLR -2 417 76 6 1217 1151 48 0 27 chr9 82924739 82924889 -41151283 - B1_Mm SINE Alu 0 147 2 6 1217 510 55 0 151 chr9 82924897 82924983 -41151189 - tRNA-Arg-AGA tRNA tRNA -3 73 1 6 1217 1791 181 44 81 chr9 82924983 82925063 -41151109 - MTD LTR MaLR -344 75 1 6 1217 1122 201 192 78 chr9 82925063 82925526 -41150646 - MTD-int LTR MaLR 0 1258 743 6 1217 2959 165 42 17 chr9 82925526 82926068 -41150104 - RLTR20B2 LTR ERVK -4 556 1 6 1217 2223 210 75 78 chr9 82926068 82926710 -41149462 - MTD-int LTR MaLR -506 752 2 6 1217 468 327 18 0 chr9 82926762 82926875 -41149297 + RSINE1 SINE B4 37 151 -14 6 1217 268 230 44 0 chr9 82926945 82927058 -41149114 + L1MD LINE L1 3100 3217 -2929 6 1217 426 338 103 8 chr9 82927585 82928110 -41148062 + L1MD LINE L1 3778 4352 -1794 6 1217 382 312 240 14 chr9 82928138 82928434 -41147738 + L1ME1 LINE L1 4541 4903 -1243 6 1217 1804 66 0 0 chr9 82928448 82928691 -41147481 - L1_Mm LINE L1 -756 5127 4885 6 1217 1538 109 143 8 chr9 82928694 82928953 -41147219 + L1Md_F2 LINE L1 6276 6569 -13 6 1217 656 296 100 40 chr9 82929138 82930080 -41146092 + L1ME1 LINE L1 5122 6124 -55 6 1217 206 157 19 38 chr9 82932083 82932136 -41144036 + A-rich Low_complexity Low_complexity 2 53 0 6 1217 592 96 0 0 chr9 82932276 82932370 -41143802 + B1_Mur4 SINE Alu 56 150 0 6 1217 558 43 0 0 chr9 82932373 82932442 -41143730 + (GGA)n Simple_repeat Simple_repeat 2 70 0 6 1217 186 43 0 0 chr9 82932629 82932652 -41143520 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 6 1217 6603 41 15 7 chr9 82932656 82933464 -41142708 - L1Md_F2 LINE L1 -14 6568 5755 6 1217 2195 119 0 19 chr9 82934209 82934533 -41141639 - ORR1A2 LTR MaLR -8 319 2 6 1217 394 273 82 8 chr9 82934853 82934975 -41141197 + B1F1 SINE Alu 14 144 -5 6 1217 202 154 0 25 chr9 82935632 82935672 -41140500 + (TAA)n Simple_repeat Simple_repeat 1 39 0 6 1217 239 220 51 0 chr9 82936276 82936335 -41139837 + L1MA6 LINE L1 4667 4728 -1415 6 1217 236 226 16 0 chr9 82936411 82936473 -41139699 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1217 1590 259 35 20 chr9 82936480 82937024 -41139148 + L1MA6 LINE L1 4737 5288 -855 6 1217 1535 206 65 63 chr9 82937076 82937459 -41138713 - ORR1C2 LTR MaLR 0 384 1 6 1217 1069 253 46 147 chr9 82937460 82937871 -41138301 + L1MA6 LINE L1 5331 5707 -593 6 1217 430 246 50 58 chr9 82937871 82937992 -41138180 - PB1D9 SINE Alu 0 120 1 6 1217 1069 253 46 147 chr9 82937992 82938423 -41137749 + L1MA6 LINE L1 5708 6088 -212 6 1217 514 289 43 22 chr9 82938512 82938650 -41137522 + RSINE1 SINE B4 2 142 -23 6 1217 382 304 132 7 chr9 82939272 82939408 -41136764 - RSINE1 SINE B4 -10 155 3 6 1217 623 58 23 0 chr9 82939412 82939499 -41136673 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 6 1217 607 174 9 0 chr9 82939499 82939608 -41136564 - B1_Mur3 SINE Alu 0 149 40 6 1217 1462 263 98 28 chr9 82939683 82940399 -41135773 - L1MC1 LINE L1 -3 6330 5565 6 1217 355 354 8 8 chr9 82940453 82940581 -41135591 - L1MC1 LINE L1 -1771 4375 4248 6 1217 276 222 55 227 chr9 82940767 82940877 -41135295 + RMER30 DNA MER1_type 44 130 -72 6 1217 854 229 64 10 chr9 82940877 82941080 -41135092 - B3 SINE B2 -2 214 1 6 1217 276 222 55 227 chr9 82941080 82941095 -41135077 + RMER30 DNA MER1_type 131 141 -61 6 1217 703 278 112 16 chr9 82941095 82941344 -41134828 + ORR1E LTR MaLR 1 273 -86 6 1217 515 317 50 14 chr9 82941379 82941520 -41134652 - RSINE1 SINE B4 -17 148 3 6 1217 892 234 195 22 chr9 82941796 82942119 -41134053 - MTE2b LTR MaLR 0 379 1 6 1217 603 276 31 0 chr9 82942236 82942363 -41133809 - RSINE1 SINE B4 -30 135 5 7 1217 716 221 21 35 chr9 82942385 82942526 -41133646 - RSINE1 SINE B4 0 165 27 7 1217 285 128 0 0 chr9 82942570 82942617 -41133555 + (A)n Simple_repeat Simple_repeat 1 47 0 7 1217 261 336 5 16 chr9 82944173 82944313 -41131859 - L2b LINE L2 -5 3382 3244 7 1217 326 374 30 24 chr9 82944482 82944649 -41131523 + MLT1J2 LTR MaLR 74 241 -207 7 1217 1136 250 66 40 chr9 82944708 82945058 -41131114 + MTEa LTR MaLR 21 379 0 7 1217 3026 96 2 19 chr9 82945192 82945608 -41130564 - RLTR9E LTR ERVK 0 409 1 7 1217 516 240 171 25 chr9 82945610 82945768 -41130404 + B4A SINE B4 14 194 -98 7 1217 312 137 0 0 chr9 82946150 82946201 -41129971 + (A)n Simple_repeat Simple_repeat 1 51 0 7 1217 956 136 213 33 chr9 82947133 82947316 -41128856 + B3 SINE B2 1 216 0 7 1217 292 214 75 67 chr9 82947985 82948105 -41128067 + L1M3 LINE L1 3892 4012 -2128 7 1217 283 328 63 46 chr9 82948327 82948611 -41127561 + L1M5 LINE L1 4418 4706 -1440 7 1217 309 82 0 0 chr9 82948885 82948934 -41127238 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1217 1333 34 0 0 chr9 82948934 82949080 -41127092 - B1_Mm SINE Alu 0 147 2 7 1217 330 267 20 91 chr9 82949872 82949923 -41126249 - ID_B1 SINE B4 -119 105 54 7 1217 1389 135 82 0 chr9 82949923 82950131 -41126041 - URR1B DNA MER1_type 0 225 1 7 1217 330 267 20 91 chr9 82950131 82950178 -41125994 - ID SINE ID -171 53 14 7 1217 1707 150 54 6 chr9 82950216 82950531 -41125641 - ORR1B1 LTR MaLR -1 393 64 7 1217 216 0 15 119 chr9 82951032 82951099 -41125073 + (CCCCAG)n Simple_repeat Simple_repeat 2 61 0 7 1217 369 328 85 25 chr9 82951584 82951784 -41124388 + MIRb SINE MIR 57 268 0 7 1217 1057 226 265 12 chr9 82952652 82952984 -41123188 - MTD LTR MaLR 0 419 4 7 1217 874 152 0 20 chr9 82952997 82953145 -41123027 - B1_Mus1 SINE Alu 0 148 4 7 1217 351 0 0 0 chr9 82953355 82953394 -41122778 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1217 348 318 67 15 chr9 82953436 82953570 -41122602 - LTR16A LTR ERVL -15 436 296 7 1217 3459 228 60 33 chr9 82953633 82954141 -41122031 + RCHARR1 DNA MER1_type 3 534 -440 7 1217 2363 107 49 25 chr9 82954141 82954506 -41121666 + Lx LINE L1 6281 6654 0 7 1217 3459 228 60 33 chr9 82954506 82954942 -41121230 + RCHARR1 DNA MER1_type 535 973 -1 7 1217 268 219 73 45 chr9 82955309 82955419 -41120753 + BC1_Mm scRNA scRNA 6 118 -34 7 1217 206 182 0 15 chr9 82955912 82955979 -41120193 + (TTA)n Simple_repeat Simple_repeat 2 67 0 7 1217 201 200 0 39 chr9 82956038 82956090 -41120082 + CT-rich Low_complexity Low_complexity 5 54 0 7 1217 315 0 0 0 chr9 82956659 82956694 -41119478 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1217 233 266 68 76 chr9 82956775 82956893 -41119279 - MLT1N2 LTR MaLR -16 546 430 7 1217 233 316 88 29 chr9 82957349 82957486 -41118686 + MIRc SINE MIR 14 158 -110 7 1217 312 27 0 0 chr9 82957943 82957980 -41118192 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 7 1217 624 287 131 23 chr9 82958037 82958511 -41117661 + Lx9 LINE L1 7102 7626 -18 7 1217 182 231 228 13 chr9 82958785 82958864 -41117308 - MIRb SINE MIR -118 150 55 7 1217 21 0 0 0 chr9 82959466 82959487 -41116685 + AT_rich Low_complexity Low_complexity 1 21 0 7 1217 1246 55 7 0 chr9 82960192 82960338 -41115834 + B1_Mus1 SINE Alu 2 148 0 7 1217 369 256 0 32 chr9 82960506 82960599 -41115573 - RSINE1 SINE B4 -34 131 42 7 1217 269 239 28 69 chr9 82962264 82962336 -41113836 - ID_B1 SINE B4 -57 167 99 7 1217 310 327 170 48 chr9 82963082 82963394 -41112778 - LTR81A LTR ERV1? -988 362 13 7 1217 250 314 29 10 chr9 82963949 82964052 -41112120 + L1MA9 LINE L1 6170 6274 -38 7 1217 23 33 0 0 chr9 82964644 82964674 -41111498 + AT_rich Low_complexity Low_complexity 1 30 0 7 1217 350 297 0 66 chr9 82964731 82964766 -41111406 + L1MC3 LINE L1 6718 6746 -1039 7 1217 1334 170 32 9 chr9 82964766 82964986 -41111186 + URR1B DNA MER1_type 1 225 0 7 1217 350 297 0 66 chr9 82964986 82965087 -41111085 + L1MC3 LINE L1 6747 6845 -940 7 1217 1620 179 84 76 chr9 82965175 82965556 -41110616 - ORR1B1 LTR MaLR -10 384 1 7 1217 296 364 50 8 chr9 82965654 82965773 -41110399 + PB1 SINE Alu 1 124 -3 7 1217 349 282 54 94 chr9 82965823 82966046 -41110126 + L1MC3 LINE L1 7029 7242 -543 7 1217 611 288 134 5 chr9 82966172 82966395 -41109777 + B4A SINE B4 8 259 -33 7 1217 1251 182 25 0 chr9 82966501 82966737 -41109435 + Lx7 LINE L1 5436 5677 -203 7 1217 9083 189 58 28 chr9 82966996 82967562 -41108610 + Lx7 LINE L1 5669 6223 -1473 7 1217 2164 146 9 58 chr9 82967562 82967905 -41108267 + ORR1A3 LTR MaLR 1 326 0 7 152 9083 189 58 28 chr9 82967905 82969249 -41106923 + Lx7 LINE L1 6224 7636 -60 7 1218 256 238 133 0 chr9 82969538 82969643 -41106529 + L1MC4a LINE L1 7764 7882 0 7 1218 217 186 16 63 chr9 82970349 82970412 -41105760 - MIR SINE MIR -133 75 16 7 1218 742 289 316 5 chr9 82974088 82974134 -41102038 - B4 SINE B4 -2 290 191 7 1218 278 270 89 11 chr9 82974134 82974224 -41101948 - PB1 SINE Alu -28 99 3 7 1218 742 289 316 5 chr9 82974224 82974306 -41101866 - B4 SINE B4 -2 190 5 7 1218 23 0 0 0 chr9 82974477 82974500 -41101672 + AT_rich Low_complexity Low_complexity 1 23 0 7 1218 232 250 0 137 chr9 82975289 82975391 -41100781 + MLT1D LTR MaLR 114 201 -304 7 1218 570 29 0 0 chr9 82975416 82975484 -41100688 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 7 1218 354 127 0 18 chr9 82975516 82975572 -41100600 - B2_Mm2 SINE B2 -94 101 47 7 1218 1103 87 7 7 chr9 82975598 82975749 -41100423 - B2_Mm1t SINE B2 -40 153 3 7 1218 350 237 82 106 chr9 82975750 82975920 -41100252 - MT2B LTR ERVL -261 340 175 7 1218 794 132 54 0 chr9 82975797 82975926 -41100246 - B1_Mur4 SINE Alu -9 141 6 7 1218 341 264 9 86 chr9 82977153 82977269 -41098903 - L1MB8 LINE L1 -1 6177 6071 7 1218 278 240 26 3 chr9 82977345 82977429 -41098743 - L1MB8 LINE L1 -279 5899 5816 7 1218 847 268 5 0 chr9 82977446 82977636 -41098536 - B3 SINE B2 -6 210 20 7 1218 402 240 20 10 chr9 82977642 82977743 -41098429 - L1MB8 LINE L1 -353 5821 5720 7 1218 28 0 0 0 chr9 82977745 82977773 -41098399 + AT_rich Low_complexity Low_complexity 1 28 0 7 1218 414 57 0 0 chr9 82977988 82978041 -41098131 + (GGA)n Simple_repeat Simple_repeat 2 54 0 7 1218 180 0 0 0 chr9 82978295 82978315 -41097857 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1218 2592 60 149 3 chr9 82978765 82979101 -41097071 - IAPEY_LTR LTR ERVK 0 385 1 7 1218 198 128 0 0 chr9 82979559 82979598 -41096574 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1218 3763 151 122 76 chr9 82979934 82980765 -41095407 + RMER19B LTR ERVK 1 869 -33 7 1218 280 355 34 81 chr9 82980893 82981129 -41095043 - Charlie19a DNA Charlie -135 251 27 7 1218 817 264 49 40 chr9 82981327 82981674 -41094498 + RLTR15 LTR ERVK 1 350 -9 7 1218 1109 186 52 42 chr9 82981751 82981964 -41094208 + B3 SINE B2 1 215 -1 7 1218 725 239 72 22 chr9 82981966 82982146 -41094026 - B3 SINE B2 -27 189 1 7 1218 395 340 85 52 chr9 82982448 82982718 -41093454 - B4 SINE B4 -12 280 2 7 1218 1465 83 5 25 chr9 82983035 82983232 -41092940 - B2_Mm1t SINE B2 0 193 1 7 1218 257 256 103 0 chr9 82983461 82983539 -41092633 - MLT1J2 LTR MaLR -280 168 83 7 1218 260 304 0 0 chr9 82983899 82983955 -41092217 - ID4 SINE ID -25 58 3 7 1218 285 29 0 0 chr9 82983965 82983999 -41092173 + (CAT)n Simple_repeat Simple_repeat 2 35 0 7 1218 1323 64 0 0 chr9 82984000 82984554 -41091618 + (CAG)n Simple_repeat Simple_repeat 1 554 0 7 1218 180 233 148 16 chr9 82984693 82984754 -41091418 + MIR SINE MIR 85 153 -55 7 1218 314 318 50 69 chr9 82984804 82984963 -41091209 + LTR33B LTR ERVL 40 195 -308 7 1218 499 230 71 22 chr9 82985191 82985373 -41090799 + RMER5 LTR ERV1 32 222 -312 7 1218 3020 78 2 2 chr9 82985378 82985777 -41090395 - MTB_Mm LTR MaLR -8 399 1 7 1218 819 333 19 10 chr9 82985778 82986087 -41090085 + RMER5 LTR ERV1 223 534 0 7 1218 381 162 0 125 chr9 82986760 82986880 -41089292 + Lx9 LINE L1 7538 7642 -2 7 1218 191 200 0 0 chr9 82987512 82987547 -41088625 + MIR SINE MIR 125 159 -103 7 1218 417 20 0 0 chr9 82988153 82988203 -41087969 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1218 3036 110 21 45 chr9 82988203 82988670 -41087502 + RMER6B LTR ERVK 4 459 -2 7 1218 240 100 0 0 chr9 82988903 82988943 -41087229 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 7 1218 644 276 15 70 chr9 82988970 82989169 -41087003 + B3A SINE B2 1 188 -10 7 1218 362 300 84 108 chr9 82990353 82990566 -41085606 + MER20B DNA MER1_type 56 263 -520 7 1218 281 314 57 38 chr9 82990609 82990715 -41085457 + MER20B DNA MER1_type 355 462 -321 7 1218 205 270 0 0 chr9 82991942 82992005 -41084167 + T-rich Low_complexity Low_complexity 1 63 0 7 1218 190 388 12 12 chr9 82993187 82993268 -41082904 + MIR SINE MIR 18 98 -164 7 1218 403 278 194 25 chr9 82993641 82993837 -41082335 - MER77 LTR ERVL -231 376 148 7 1218 754 297 59 10 chr9 82993893 82994097 -41082075 - ID_B1 SINE B4 -8 216 3 7 1218 1704 221 101 50 chr9 82994159 82994713 -41081459 + RLTR31A_Mm LTR ERVK 1 582 -2 7 1218 258 270 44 22 chr9 82995515 82995606 -41080566 - MTEa LTR MaLR -6 373 281 7 1218 273 283 141 0 chr9 82996016 82996115 -41080057 - PB1 SINE Alu -2 125 13 7 1218 264 170 0 0 chr9 82996213 82996266 -41079906 + (CAT)n Simple_repeat Simple_repeat 2 54 0 7 1218 403 301 29 0 chr9 82996268 82996371 -41079801 - ID_B1 SINE B4 -33 191 86 7 1218 261 0 0 0 chr9 82997316 82997345 -41078827 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 7 1218 783 230 34 64 chr9 82997584 82997788 -41078384 + B3A SINE B2 1 198 0 7 1218 300 279 38 12 chr9 82997823 82997903 -41078269 - ID_B1 SINE B4 -63 161 80 7 1218 5081 93 18 11 chr9 82998434 82999142 -41077030 - L1_Mus4 LINE L1 -4 6632 5920 7 1218 640 283 109 29 chr9 82999241 82999626 -41076546 - L1MB8 LINE L1 -294 5884 5469 8 1218 1738 166 53 0 chr9 82999688 82999989 -41076183 + MTC LTR MaLR 105 421 0 8 1218 648 276 71 9 chr9 83000108 83000320 -41075852 - Lx6 LINE L1 -90 7370 7146 1 1218 425 231 161 0 chr9 83000364 83000550 -41075622 - L1M4 LINE L1 -873 5273 5058 2 1218 404 148 59 0 chr9 83001952 83002053 -41074119 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 3 1218 318 68 0 0 chr9 83002064 83002108 -41074064 + HAL1-3A_ME LINE L1 1975 2018 -840 4 1218 198 194 0 0 chr9 83003042 83003104 -41073068 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1218 522 177 42 0 chr9 83003105 83003201 -41072971 - B1_Mur1 SINE Alu -17 132 33 6 1218 267 103 0 0 chr9 83004044 83004083 -41072089 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 7 1218 429 224 25 41 chr9 83006718 83006839 -41069333 + PB1D7 SINE Alu 1 119 -1 8 1218 412 259 138 0 chr9 83006844 83006960 -41069212 + RSINE1 SINE B4 3 134 -31 9 1218 257 128 0 21 chr9 83007311 83007359 -41068813 + (GGGAGA)n Simple_repeat Simple_repeat 5 51 0 1 1218 211 235 14 29 chr9 83007424 83007494 -41068678 - B4A SINE B4 -124 168 100 1 1218 23 33 0 0 chr9 83008424 83008454 -41067718 + AT_rich Low_complexity Low_complexity 1 30 0 1 1218 264 59 0 0 chr9 83008862 83008896 -41067276 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1218 223 216 0 19 chr9 83011659 83011711 -41064461 + L3 LINE CR1 954 1004 -3485 1 1218 27 62 0 0 chr9 83012559 83012607 -41063565 + AT_rich Low_complexity Low_complexity 1 48 0 1 1218 360 0 0 0 chr9 83012830 83012870 -41063302 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1218 962 297 25 0 chr9 83014199 83014475 -41061697 - B4A SINE B4 -9 283 1 1 1218 477 0 0 0 chr9 83014489 83014542 -41061630 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1218 396 211 73 81 chr9 83014613 83014737 -41061435 - B3A SINE B2 -75 123 1 1 1218 414 0 0 0 chr9 83015105 83015151 -41061021 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1218 2824 292 65 32 chr9 83015155 83016246 -41059926 + Lx9 LINE L1 6357 7483 -161 2 1218 25 31 0 0 chr9 83016345 83016377 -41059795 + AT_rich Low_complexity Low_complexity 1 32 0 2 1218 420 202 13 0 chr9 83016614 83016693 -41059479 + B3A SINE B2 58 137 -61 2 1218 734 265 22 0 chr9 83016692 83016877 -41059295 + B3A SINE B2 10 198 0 2 1218 1261 208 140 25 chr9 83017530 83017894 -41058278 + MTD LTR MaLR 1 406 -13 2 1218 618 253 0 0 chr9 83019791 83019965 -41056207 + (CATATA)n Simple_repeat Simple_repeat 4 177 0 2 1218 4753 40 37 0 chr9 83020358 83020927 -41055245 + L1_Mus1 LINE L1 5977 6566 -1 2 1218 631 276 63 7 chr9 83021890 83022160 -41054012 - Charlie5 DNA MER1_type -36 2588 2304 2 1218 393 102 0 0 chr9 83023301 83023360 -41052812 + (GGGGA)n Simple_repeat Simple_repeat 4 62 0 2 1218 347 0 23 0 chr9 83023710 83023753 -41052419 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1218 433 259 164 78 chr9 83023758 83024026 -41052146 - B4A SINE B4 0 292 2 3 1218 410 265 170 75 chr9 83024610 83024875 -41051297 - B4A SINE B4 -1 291 2 3 1218 4675 111 44 12 chr9 83024937 83025665 -41050507 + RMER6A LTR ERVK 4 754 -2 3 1218 247 259 0 0 chr9 83026597 83026651 -41049521 - ID_B1 SINE B4 -63 161 108 3 1218 845 245 25 0 chr9 83026753 83026949 -41049223 - ID_B1 SINE B4 -8 216 16 3 1218 253 263 3 0 chr9 83027238 83027315 -41048857 - B1F2 SINE Alu -33 84 7 3 1218 486 0 0 0 chr9 83027432 83027486 -41048686 + (GGA)n Simple_repeat Simple_repeat 3 56 0 3 1218 337 250 162 43 chr9 83027500 83027617 -41048555 + RSINE1 SINE B4 2 132 -33 3 1218 507 33 0 0 chr9 83028155 83028216 -41047956 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1218 305 245 67 96 chr9 83030143 83030247 -41045925 + RSINE1 SINE B4 1 101 -64 4 1218 1217 229 135 6 chr9 83030315 83030662 -41045510 + MTD LTR MaLR 14 405 -14 4 1218 468 0 0 0 chr9 83030776 83030828 -41045344 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1218 539 324 76 34 chr9 83030942 83031322 -41044850 + L1MB8 LINE L1 5572 5967 -211 4 1218 270 268 55 134 chr9 83031609 83031773 -41044399 - B2_Mm2 SINE B2 -10 185 35 4 1218 2628 127 17 2 chr9 83031775 83032192 -41043980 - Lx2 LINE L1 0 6997 6575 4 1218 1007 126 23 4 chr9 83032192 83032372 -41043800 + B2_Mm2 SINE B2 19 208 -8 4 1218 249 240 40 30 chr9 83032893 83032992 -41043180 + L1_Mur3 LINE L1 217 316 -7412 4 1218 4657 155 36 107 chr9 83032988 83034486 -41041686 + L1_Mur3 LINE L1 869 2253 -3627 4 1218 1387 213 102 26 chr9 83034602 83035022 -41041150 - RMER4B LTR ERVK -133 452 1 4 1218 1135 147 0 0 chr9 83035025 83035209 -41040963 + L1_Mur3 LINE L1 2260 2443 -3437 4 1218 4871 158 48 25 chr9 83035204 83036190 -41039982 + L1_Mur3 LINE L1 3196 4203 -1677 4 1218 230 97 0 0 chr9 83036258 83036289 -41039883 + L1_Mur3 LINE L1 4210 4240 -1640 4 1218 414 0 0 0 chr9 83036757 83036803 -41039369 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1218 870 222 175 0 chr9 83037324 83037558 -41038614 + B4A SINE B4 2 276 -16 5 1218 531 0 0 0 chr9 83037578 83037637 -41038535 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1218 467 33 0 16 chr9 83038020 83038082 -41038090 + (CATA)n Simple_repeat Simple_repeat 1 61 0 5 1218 180 0 0 0 chr9 83038904 83038924 -41037248 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 5 1218 363 276 30 73 chr9 83041038 83041202 -41034970 + L1ME1 LINE L1 3701 3857 -2289 5 1218 214 140 20 20 chr9 83041212 83041263 -41034909 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 5 1218 379 268 118 6 chr9 83041320 83041489 -41034683 + L1ME1 LINE L1 5761 5948 -231 5 1218 2417 14 3 0 chr9 83041566 83041862 -41034310 + MT2_Mm LTR ERVL 1 297 -196 5 1218 5602 3 0 0 chr9 83041862 83042460 -41033712 + MERVL-int LTR ERVL 2959 3556 -1929 5 1218 10173 11 0 0 chr9 83042453 83043556 -41032616 + MERVL-int LTR ERVL 1846 2948 -2537 5 1218 1761 23 0 0 chr9 83043556 83043775 -41032397 + MTA_Mm LTR MaLR 178 396 0 5 1218 429 70 0 0 chr9 83044281 83044338 -41031834 + (GGA)n Simple_repeat Simple_repeat 3 59 0 6 1218 253 103 0 0 chr9 83044449 83044488 -41031684 - ID4 SINE ID -43 40 2 6 1218 824 191 113 36 chr9 83044763 83044958 -41031214 + B3 SINE B2 1 210 -6 6 1218 215 259 0 33 chr9 83045575 83045635 -41030537 + GA-rich Low_complexity Low_complexity 5 62 0 6 1218 252 304 0 0 chr9 83045700 83045779 -41030393 + L1MA4 LINE L1 5850 5928 -372 6 1218 387 0 0 0 chr9 83045798 83045841 -41030331 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1218 495 0 0 0 chr9 83046172 83046227 -41029945 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1218 229 274 42 0 chr9 83047230 83047325 -41028847 - MER2 DNA MER2_type -136 209 111 6 1218 1036 166 136 0 chr9 83048433 83048632 -41027540 + URR1A DNA MER1_type 1 226 0 6 1218 30 0 0 0 chr9 83048939 83048969 -41027203 + AT_rich Low_complexity Low_complexity 1 30 0 6 1218 549 44 0 0 chr9 83049737 83049805 -41026367 + (GA)n Simple_repeat Simple_repeat 1 68 0 7 1218 316 206 40 14 chr9 83049940 83050014 -41026158 + RSINE1 SINE B4 61 136 -29 7 1218 723 24 0 0 chr9 83050023 83050108 -41026064 + (TC)n Simple_repeat Simple_repeat 1 85 0 7 1218 189 0 0 0 chr9 83050108 83050128 -41026044 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1218 183 42 0 0 chr9 83050567 83050591 -41025581 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1218 459 0 0 0 chr9 83050592 83050643 -41025529 + (AATAG)n Simple_repeat Simple_repeat 1 51 0 7 1218 198 71 0 0 chr9 83051585 83051613 -41024559 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1218 1794 227 54 0 chr9 83052319 83052711 -41023461 - MTD LTR MaLR -6 413 1 7 1218 852 139 60 0 chr9 83053045 83053196 -41022976 + B2_Mm2 SINE B2 2 161 -34 7 1218 585 0 0 0 chr9 83053197 83053262 -41022910 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 1218 310 318 173 13 chr9 83053267 83053423 -41022749 + MLT1D-int LTR MaLR 243 423 -964 8 1218 4906 94 45 12 chr9 83053645 83054363 -41021809 + Lx LINE L1 5907 6647 -7 8 1218 227 321 99 18 chr9 83054566 83054677 -41021495 + MLT1D-int LTR MaLR 832 951 -436 8 1218 239 281 37 0 chr9 83055123 83055205 -41020967 + MLT1D LTR MaLR 78 162 -465 8 1218 759 146 225 0 chr9 83055290 83055468 -41020704 - URR1A DNA MER1_type -8 218 1 8 1218 539 348 58 9 chr9 83055607 83055833 -41020339 + MLT1D LTR MaLR 265 501 -4 8 1218 255 79 0 0 chr9 83056084 83056122 -41020050 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1218 198 118 0 0 chr9 83056297 83056331 -41019841 + (TA)n Simple_repeat Simple_repeat 1 34 0 8 1218 187 325 64 13 chr9 83057366 83057444 -41018728 - L2a LINE L2 -5 3421 3340 8 1218 384 267 38 38 chr9 83057465 83057570 -41018602 + PB1D10 SINE Alu 9 113 -7 8 1218 4425 154 105 9 chr9 83057586 83058402 -41017770 - RMER19B LTR ERVK -7 895 1 8 1218 355 113 0 0 chr9 83058402 83058455 -41017717 - ORR1A3 LTR MaLR -2 324 272 8 1218 38223 70 17 8 chr9 83058455 83064566 -41011606 - L1Md_F3 LINE L1 0 6587 412 8 1218 1723 151 22 66 chr9 83064567 83064886 -41011286 - ORR1A1 LTR MaLR -41 305 1 9 1218 221 139 23 0 chr9 83065409 83065452 -41010720 + (CAA)n Simple_repeat Simple_repeat 2 45 0 9 1218 1776 224 74 113 chr9 83065496 83066163 -41010009 + RMER19C LTR ERVK 39 737 0 9 1218 215 200 0 0 chr9 83066163 83066198 -41009974 - ID2 SINE ID -22 61 27 9 1218 1091 215 191 17 chr9 83066235 83066528 -41009644 - MTD LTR MaLR -8 411 68 9 1218 225 154 0 0 chr9 83066534 83066573 -41009599 + T-rich Low_complexity Low_complexity 1 39 0 9 1218 570 78 29 19 chr9 83066597 83066687 -41009485 - L1Md_F3 LINE L1 -2 6582 6490 9 1218 2712 96 11 65 chr9 83066687 83067121 -41009051 - IAPLTR2a LTR ERVK 0 411 1 9 1218 570 78 29 19 chr9 83067121 83067134 -41009038 - L1Md_F3 LINE L1 -95 6489 6478 9 1218 26796 13 2 0 chr9 83067134 83070071 -41006101 - IAPEz-int LTR ERVK -13 6468 3525 9 1218 941 88 24 0 chr9 83070071 83070196 -41005976 - IAPEz-int LTR ERVK -2770 4910 4783 9 1218 1903 86 4 0 chr9 83070191 83070436 -41005736 - IAPEz-int LTR ERVK -5183 2497 2252 9 1218 979 59 0 0 chr9 83070437 83070556 -41005616 - IAPEz-int LTR ERVK -5004 1477 1359 9 1218 5241 52 3 35 chr9 83070556 83071232 -41004940 - IAPEz-int LTR ERVK -5819 662 9 9 1218 2716 103 9 58 chr9 83071233 83071665 -41004507 - IAPLTR2a LTR ERVK 0 411 1 9 1218 36639 63 3 12 chr9 83071665 83077763 -40998409 - L1Md_F3 LINE L1 -89 6495 450 9 1218 431 195 0 0 chr9 83077765 83077842 -40998330 - MTD LTR MaLR -342 77 1 9 1218 614 253 100 50 chr9 83077852 83078251 -40997921 + MER106B DNA MER1_type 391 809 -250 1 1218 608 295 0 0 chr9 83078251 83078380 -40997792 - ID_B1 SINE B4 -10 214 86 1 1218 30 59 0 0 chr9 83078384 83078435 -40997737 + AT_rich Low_complexity Low_complexity 1 51 0 1 1218 2381 196 67 29 chr9 83078435 83078987 -40997185 + RLTR20B3 LTR ERVK 5 577 0 1 1218 599 237 20 54 chr9 83079143 83079290 -40996882 - RSINE1 SINE B4 -21 144 3 1 1218 376 286 48 0 chr9 83079920 83080025 -40996147 + PB1D10 SINE Alu 1 110 -7 1 1218 243 327 61 36 chr9 83080206 83080371 -40995801 + L1MB7 LINE L1 2120 2288 -3858 1 1218 697 252 24 57 chr9 83080372 83080633 -40995539 + L1MA4 LINE L1 5656 5891 -1582 1 1218 306 0 0 0 chr9 83080636 83080670 -40995502 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1218 366 23 0 0 chr9 83080950 83080993 -40995179 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1218 3595 271 127 30 chr9 83080994 83082774 -40993398 + L1MB7 LINE L1 2323 4275 -1871 1 1218 958 250 56 39 chr9 83082781 83083118 -40993054 + RLTR15 LTR ERVK 1 343 -16 1 1218 1502 284 94 29 chr9 83083140 83084243 -40991929 + L1MB7 LINE L1 4300 5472 -702 1 1218 1055 272 53 18 chr9 83084259 83084540 -40991632 + B4A SINE B4 2 292 0 1 1218 219 211 194 14 chr9 83084609 83084681 -40991491 + PB1D10 SINE Alu 26 110 -7 1 1218 524 267 174 5 chr9 83084715 83084922 -40991250 + L1MB7 LINE L1 5511 5752 -432 1 1218 1729 227 20 36 chr9 83084983 83085431 -40990741 + RLTR20C LTR ERVK 94 534 0 1 1218 589 314 65 12 chr9 83085431 83085769 -40990403 + L1MB7 LINE L1 5746 6107 -77 1 1218 181 331 171 16 chr9 83086189 83086318 -40989854 - MIR SINE MIR -84 178 30 1 1218 1421 213 201 3 chr9 83086694 83087028 -40989144 - MTD LTR MaLR -5 414 15 1 1218 210 156 0 0 chr9 83087029 83087074 -40989098 + (CAAAT)n Simple_repeat Simple_repeat 5 49 0 1 1218 456 19 0 0 chr9 83087649 83087702 -40988470 + (CACG)n Simple_repeat Simple_repeat 3 55 0 1 1218 240 175 0 0 chr9 83088310 83088350 -40987822 - tRNA-Thr-ACG_ tRNA tRNA -37 40 1 1 1218 212 315 0 42 chr9 83089326 83089422 -40986750 + G-rich Low_complexity Low_complexity 2 93 0 1 1218 261 302 53 73 chr9 83089605 83089755 -40986417 + B1F SINE Alu 1 147 -2 1 1218 451 266 53 9 chr9 83089763 83089877 -40986295 + ID_B1 SINE B4 87 205 -19 1 1218 365 299 55 39 chr9 83090842 83091023 -40985149 + MLT1A LTR MaLR 66 249 -125 1 1218 32 26 0 0 chr9 83091120 83091159 -40985013 + AT_rich Low_complexity Low_complexity 1 39 0 1 1218 441 278 20 60 chr9 83093644 83093824 -40982348 - MIRb SINE MIR -32 236 51 1 1218 24 53 0 0 chr9 83093904 83093942 -40982230 + AT_rich Low_complexity Low_complexity 1 38 0 1 1218 5279 116 3 9 chr9 83094177 83094945 -40981227 + Lx2 LINE L1 6166 6928 -69 1 1218 186 235 116 14 chr9 83095531 83095600 -40980572 - L2a LINE L2 -18 3408 3333 1 1218 670 282 84 45 chr9 83097194 83097577 -40978595 + L1M4 LINE L1 2662 3055 -3091 1 1218 1057 247 35 113 chr9 83097869 83098275 -40977897 + MTE2a LTR MaLR 6 379 0 1 1218 476 287 77 77 chr9 83098568 83098881 -40977291 - L1MA4 LINE L1 -187 5993 5681 1 1218 294 241 0 0 chr9 83098992 83099079 -40977093 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 1 1219 2573 297 43 27 chr9 83099692 83100569 -40975603 + Lx8 LINE L1 6307 7197 -276 1 1219 360 43 0 0 chr9 83100660 83100706 -40975466 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1219 310 187 22 0 chr9 83100794 83100885 -40975287 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 1219 194 365 23 23 chr9 83101556 83101643 -40974529 - L3 LINE CR1 -2027 2462 2376 1 1219 224 77 26 0 chr9 83101727 83101766 -40974406 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1219 1034 247 102 26 chr9 83101774 83102040 -40974132 - B4A SINE B4 -4 288 3 1 1219 480 122 0 0 chr9 83102130 83102154 -40974018 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1219 1230 74 0 20 chr9 83102154 83102305 -40973867 + B1_Mus1 SINE Alu 1 148 0 1 1219 480 122 0 0 chr9 83102305 83102378 -40973794 + (A)n Simple_repeat Simple_repeat 1 73 0 1 1219 615 131 16 57 chr9 83102465 83102587 -40973585 + B1_Mur4 SINE Alu 34 150 0 1 1219 264 268 0 0 chr9 83102865 83102921 -40973251 + polypyrimidine Low_complexity Low_complexity 3 58 0 1 1219 414 254 52 17 chr9 83103016 83103132 -40973040 + MER5B DNA MER1_type 3 122 -56 1 1219 29 28 0 0 chr9 83103478 83103514 -40972658 + AT_rich Low_complexity Low_complexity 1 36 0 1 1219 311 368 28 0 chr9 83103924 83104030 -40972142 - B1_Mur3 SINE Alu -38 111 3 1 1219 23 0 0 0 chr9 83105104 83105127 -40971045 + AT_rich Low_complexity Low_complexity 1 23 0 1 1219 210 171 0 0 chr9 83105439 83105480 -40970692 + CT-rich Low_complexity Low_complexity 6 46 0 1 1219 837 249 86 0 chr9 83105526 83105560 -40970612 - B3 SINE B2 0 216 168 1 1219 369 62 0 0 chr9 83105560 83105608 -40970564 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1219 837 249 86 0 chr9 83105608 83105770 -40970402 - B3 SINE B2 -49 167 4 1 1219 398 20 0 19 chr9 83105770 83105822 -40970350 + (TTA)n Simple_repeat Simple_repeat 3 53 0 1 1219 512 323 57 63 chr9 83106181 83106498 -40969674 + ORR1D2 LTR MaLR 56 370 0 1 1219 617 292 30 25 chr9 83106524 83106721 -40969451 - RMER15 LTR ERVL -42 533 336 1 1219 39 50 0 0 chr9 83107431 83107491 -40968681 + AT_rich Low_complexity Low_complexity 1 60 0 1 1219 307 158 34 20 chr9 83107491 83107640 -40968532 + (TATAA)n Simple_repeat Simple_repeat 5 155 0 1 1219 30 69 0 0 chr9 83107682 83107740 -40968432 + AT_rich Low_complexity Low_complexity 1 58 0 1 1219 1957 163 51 69 chr9 83107856 83108061 -40968111 - ORR1C2 LTR MaLR 0 384 175 1 1219 773 87 9 0 chr9 83108061 83108176 -40967996 + (GA)n Simple_repeat Simple_repeat 1 116 0 1 1219 1957 163 51 69 chr9 83108176 83108359 -40967813 - ORR1C2 LTR MaLR -210 174 3 1 1219 201 100 60 0 chr9 83108840 83108890 -40967282 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 1 1219 327 130 0 0 chr9 83109653 83109707 -40966465 + (TATG)n Simple_repeat Simple_repeat 3 56 0 1 1219 303 280 12 152 chr9 83109761 83109944 -40966228 + B4A SINE B4 5 159 -65 1 1219 187 169 68 0 chr9 83110100 83110159 -40966013 + (CATG)n Simple_repeat Simple_repeat 1 63 0 1 1219 432 0 0 0 chr9 83110561 83110609 -40965563 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1219 216 0 0 0 chr9 83110609 83110632 -40965540 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1219 379 256 51 0 chr9 83110809 83110887 -40965285 - ID4_ SINE ID 0 83 2 1 1219 227 283 92 61 chr9 83111035 83111133 -40965039 + LTR16A1 LTR ERVL 6 106 -350 1 1219 381 331 130 82 chr9 83111334 83111955 -40964217 - L1M5 LINE L1 -2390 3756 3106 1 1219 232 179 0 25 chr9 83112765 83112805 -40963367 + PB1D10 SINE Alu 69 107 -10 1 1219 2250 29 0 25 chr9 83112831 83113111 -40963061 + L1Md_F3 LINE L1 6298 6570 -14 1 1219 321 257 0 0 chr9 83113725 83113795 -40962377 - PB1D10 SINE Alu -21 96 27 1 1219 277 309 43 52 chr9 83114081 83114197 -40961975 + PB1D10 SINE Alu 2 116 -1 1 1219 234 91 0 0 chr9 83114263 83114296 -40961876 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1219 423 98 6 0 chr9 83114393 83114461 -40961711 + L1Md_F2 LINE L1 5533 5616 -675 1 1219 7989 45 17 1 chr9 83114461 83115439 -40960733 + L1Md_F2 LINE L1 5588 6581 -1 1 1219 747 182 20 20 chr9 83115778 83115924 -40960248 + B1_Mur2 SINE Alu 2 147 -2 1 1219 3407 92 8 6 chr9 83116107 83116579 -40959593 - MT2C_Mm LTR ERVL 0 475 3 1 1219 24 32 0 0 chr9 83116931 83116962 -40959210 + AT_rich Low_complexity Low_complexity 1 31 0 1 1219 1028 168 77 0 chr9 83119012 83119220 -40956952 - URR1B DNA MER1_type 0 225 2 1 1219 275 354 0 0 chr9 83119336 83119418 -40956754 - ID_B1 SINE B4 -38 186 105 1 1219 183 80 0 0 chr9 83119474 83119499 -40956673 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1219 575 112 10 0 chr9 83119513 83119611 -40956561 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 1 1219 20629 152 69 54 chr9 83120392 83126401 -40949771 + Lx3C LINE L1 875 6996 -4 1 1219 216 0 0 0 chr9 83128462 83128486 -40947686 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1219 286 270 13 13 chr9 83128601 83128676 -40947496 - ID4 SINE ID -7 76 2 1 1219 504 0 0 0 chr9 83129059 83129115 -40947057 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1219 464 158 0 10 chr9 83129721 83129817 -40946355 + GA-rich Low_complexity Low_complexity 3 97 0 1 1219 1911 124 97 0 chr9 83130262 83130560 -40945612 - ORR1A2 LTR MaLR 0 327 1 1 1219 909 273 76 14 chr9 83130951 83131226 -40944946 + B4A SINE B4 1 292 0 1 1219 246 32 0 0 chr9 83131544 83131575 -40944597 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1219 716 227 55 84 chr9 83133772 83133974 -40942198 + B3A SINE B2 1 196 -2 1 1219 709 262 5 50 chr9 83134124 83134325 -40941847 - B3A SINE B2 0 198 7 1 1219 201 74 0 0 chr9 83134492 83134519 -40941653 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1 1219 218 205 0 0 chr9 83134627 83134666 -40941506 - L2b LINE L2 -219 3156 3118 1 1219 607 311 91 18 chr9 83135955 83136419 -40939753 - L1MA5A LINE L1 -1694 5950 5480 1 1219 23 78 0 0 chr9 83136720 83136771 -40939401 + AT_rich Low_complexity Low_complexity 1 51 0 1 1219 886 230 39 11 chr9 83137096 83137276 -40938896 - B3 SINE B2 -9 207 23 1 1219 475 306 72 85 chr9 83138548 83138784 -40937388 - MLT1J LTR MaLR -47 465 233 1 1219 1441 81 10 0 chr9 83139638 83140013 -40936159 + L1_Mus3 LINE L1 6428 6638 0 1 1219 525 58 0 0 chr9 83140013 83140081 -40936091 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 1 1219 441 0 0 0 chr9 83140315 83140364 -40935808 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 1 1219 204 40 0 0 chr9 83140514 83140539 -40935633 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1219 285 75 0 0 chr9 83141371 83141411 -40934761 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2 1219 1236 242 82 24 chr9 83141946 83142276 -40933896 - ORR1D2 LTR MaLR 0 370 22 2 1219 315 0 0 0 chr9 83142785 83142820 -40933352 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1219 1409 56 0 48 chr9 83142915 83143102 -40933070 + B2_Mm2 SINE B2 3 180 -15 2 1219 230 200 45 30 chr9 83143140 83143207 -40932965 - Kanga1c DNA Tc2 -659 70 3 2 1219 352 291 100 60 chr9 83143759 83143909 -40932263 - MER5A DNA MER1_type -12 177 22 2 1219 1654 137 77 0 chr9 83143933 83144218 -40931954 - IAPEY3_LTR LTR ERVK -12 320 14 2 1219 389 217 0 14 chr9 83145065 83145135 -40931037 - RSINE1 SINE B4 -92 73 5 2 1219 213 121 0 0 chr9 83145394 83145427 -40930745 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 2 1219 253 0 26 26 chr9 83146283 83146321 -40929851 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 1219 379 245 75 56 chr9 83147798 83147958 -40928214 + RSINE1 SINE B4 2 164 -1 2 1219 21 0 0 0 chr9 83148464 83148485 -40927687 + AT_rich Low_complexity Low_complexity 1 21 0 2 1219 318 348 114 22 chr9 83148740 83149013 -40927159 - L1MC LINE L1 -2099 4047 3750 2 1219 671 291 42 18 chr9 83149069 83149352 -40926820 - B4A SINE B4 -2 290 1 2 1219 531 194 0 0 chr9 83149357 83149465 -40926707 + CT-rich Low_complexity Low_complexity 1 108 0 2 1219 378 33 50 0 chr9 83149465 83149525 -40926647 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2 1219 201 176 39 19 chr9 83149826 83149878 -40926294 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1219 597 217 111 64 chr9 83150993 83151165 -40925007 - B3A SINE B2 -3 195 16 2 1219 721 325 113 35 chr9 83151504 83151526 -40924646 + Charlie8 DNA MER1_type 1750 1771 -657 2 1219 1365 214 83 11 chr9 83151526 83151875 -40924297 - ORR1D1 LTR MaLR 0 374 1 2 1219 721 325 113 35 chr9 83151875 83152251 -40923921 + Charlie8 DNA MER1_type 1772 2179 -249 2 1219 623 112 9 0 chr9 83152519 83152626 -40923546 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 1219 25 0 0 0 chr9 83154995 83155020 -40921152 + AT_rich Low_complexity Low_complexity 1 25 0 2 1219 198 91 0 0 chr9 83155405 83155438 -40920734 + (CAATG)n Simple_repeat Simple_repeat 5 37 0 2 1219 681 251 79 29 chr9 83155535 83155814 -40920358 + L1MB4 LINE L1 5590 5882 -298 2 1219 455 315 62 4 chr9 83156159 83156417 -40919755 + L1MB4 LINE L1 5902 6174 -6 2 1219 694 153 18 143 chr9 83156552 83156720 -40919452 - B1_Mur4 SINE Alu 0 150 4 2 1219 311 0 0 25 chr9 83156733 83156773 -40919399 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1219 1179 69 0 0 chr9 83156773 83156918 -40919254 - B1_Mm SINE Alu -1 146 2 2 1219 28 0 0 0 chr9 83157337 83157365 -40918807 + AT_rich Low_complexity Low_complexity 1 28 0 2 1219 731 187 20 48 chr9 83157793 83157939 -40918233 - B1_Mus1 SINE Alu 0 148 7 2 1219 396 0 0 0 chr9 83159703 83159747 -40916425 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1219 510 277 57 17 chr9 83160690 83160866 -40915306 + B3A SINE B2 2 184 -14 2 1219 21 57 0 0 chr9 83160912 83160947 -40915225 + AT_rich Low_complexity Low_complexity 1 35 0 2 1219 1074 156 416 12 chr9 83161159 83161490 -40914682 - RLTR20B3 LTR ERVK -62 498 34 2 1219 1397 82 16 0 chr9 83161814 83161998 -40914174 - B2_Mm2 SINE B2 -7 188 2 2 1219 263 261 0 0 chr9 83162065 83162130 -40914042 - L1MB3 LINE L1 -213 5970 5906 2 1219 229 286 174 36 chr9 83162450 83162588 -40913584 - MER103 DNA DNA -7 159 3 2 1219 180 29 56 56 chr9 83163283 83163319 -40912853 + L3 LINE CR1 3748 3783 -706 2 1219 644 247 116 102 chr9 83164180 83164464 -40911708 + RMER1B Other Other 3 290 -776 2 1219 1709 184 50 8 chr9 83164462 83164823 -40911349 + RMER1B Other Other 687 1062 -4 2 1219 22 0 0 0 chr9 83165802 83165824 -40910348 + AT_rich Low_complexity Low_complexity 1 22 0 2 1219 229 82 41 0 chr9 83166710 83166759 -40909413 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 2 1219 472 297 58 26 chr9 83166878 83167068 -40909104 - MLT1B LTR MaLR -4 386 191 2 1219 970 263 37 15 chr9 83167217 83167487 -40908685 - B4 SINE B4 -14 278 3 2 1219 311 274 29 19 chr9 83167487 83167591 -40908581 - MLT1B LTR MaLR -283 107 3 2 1219 561 244 84 0 chr9 83168528 83168659 -40907513 + B1_Mur1 SINE Alu 1 142 -7 2 1219 359 182 13 0 chr9 83168668 83168745 -40907427 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1219 235 205 12 25 chr9 83168785 83168865 -40907307 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 2 1219 732 284 55 18 chr9 83168989 83169208 -40906964 - MTE2a LTR MaLR -2 377 151 2 1219 1348 202 108 67 chr9 83169206 83169593 -40906579 - MTC-int LTR MaLR -496 762 360 2 1219 489 251 24 88 chr9 83170002 83170207 -40905965 - B3A SINE B2 -6 192 1 2 1219 844 288 60 58 chr9 83170339 83170437 -40905735 - MER68 LTR ERVL -9 554 467 2 1219 347 0 23 0 chr9 83170437 83170480 -40905692 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 1219 844 288 60 58 chr9 83170480 83170728 -40905444 - MER68 LTR ERVL -97 466 207 2 1219 195 100 0 0 chr9 83172003 83172033 -40904139 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1219 270 81 0 61 chr9 83172224 83172290 -40903882 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 2 1219 9515 20 0 0 chr9 83172401 83173479 -40902693 + L1Md_T LINE L1 4509 5586 -297 2 1219 8168 55 0 0 chr9 83173479 83174474 -40901698 + L1Md_T LINE L1 5587 6581 -1 2 1219 7538 16 1 0 chr9 83174474 83175323 -40900849 + L1Md_T LINE L1 4737 5586 -297 2 1219 8497 37 0 1 chr9 83175323 83176320 -40899852 + L1Md_T LINE L1 5587 6582 0 2 1219 550 302 11 51 chr9 83177507 83177685 -40898487 - B3 SINE B2 -44 172 2 2 1219 381 95 0 0 chr9 83178092 83178155 -40898017 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 2 1219 195 42 0 0 chr9 83178155 83178178 -40897994 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 2 1219 1048 58 73 0 chr9 83178205 83178342 -40897830 - B1_Mus2 SINE Alu 0 147 1 2 1219 241 227 52 26 chr9 83178346 83178423 -40897749 - L1MEf LINE L1 -4476 1724 1646 2 1219 897 259 23 61 chr9 83178696 83178959 -40897213 + Lx6 LINE L1 6281 6754 -706 2 1219 1818 219 59 29 chr9 83178958 83179414 -40896758 + L1_Mur3 LINE L1 4778 5247 -633 2 1219 378 303 75 8 chr9 83179704 83179837 -40896335 + ORR1E LTR MaLR 3 144 -215 2 1219 198 0 0 0 chr9 83179949 83179971 -40896201 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1219 245 299 111 9 chr9 83180180 83180288 -40895884 + L3 LINE CR1 3493 3611 -878 2 1219 11428 54 1 8 chr9 83180537 83181961 -40894211 - L1Md_F2 LINE L1 -170 5713 4300 2 1219 6872 49 1 26 chr9 83181961 83182828 -40893344 + L1Md_F2 LINE L1 5726 6570 -12 2 1219 2240 175 10 2 chr9 83183141 83183554 -40892618 - MTC LTR MaLR 0 421 6 2 1219 990 161 48 0 chr9 83183846 83184032 -40892140 - MTD LTR MaLR -2 417 223 2 1219 267 121 43 57 chr9 83184551 83184621 -40891551 - Lx7 LINE L1 0 7696 7628 2 1219 249 118 14 42 chr9 83184652 83184723 -40891449 + A-rich Low_complexity Low_complexity 3 71 0 2 1219 24 67 0 0 chr9 83185112 83185157 -40891015 + AT_rich Low_complexity Low_complexity 1 45 0 2 1219 3090 44 8 35 chr9 83185160 83185561 -40890611 - L1Md_F2 LINE L1 -1 6581 6192 2 1219 315 71 0 0 chr9 83185914 83185956 -40890216 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1219 536 144 178 31 chr9 83186417 83186546 -40889626 + B1_Mur4 SINE Alu 1 148 -2 2 1219 272 137 0 19 chr9 83186639 83186691 -40889481 + CT-rich Low_complexity Low_complexity 1 51 0 2 1219 216 0 0 0 chr9 83186944 83186968 -40889204 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1219 468 0 0 0 chr9 83188673 83188725 -40887447 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1219 423 56 0 0 chr9 83188725 83188778 -40887394 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1219 456 51 0 0 chr9 83188780 83188839 -40887333 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1219 287 273 65 0 chr9 83190866 83190943 -40885229 - ID4_ SINE ID 0 83 2 2 1219 466 259 59 7 chr9 83191351 83191592 -40884580 + ORR1D1 LTR MaLR 7 379 0 2 1219 25 0 0 0 chr9 83191972 83191997 -40884175 + AT_rich Low_complexity Low_complexity 1 25 0 2 1219 890 309 82 27 chr9 83192162 83192611 -40883561 + MLT1D LTR MaLR 32 505 0 2 1219 183 371 68 17 chr9 83193397 83193515 -40882657 - MIR SINE MIR -81 181 58 2 1219 344 283 29 57 chr9 83195182 83195356 -40880816 + RSINE1 SINE B4 78 292 0 2 1219 488 150 9 0 chr9 83195671 83195784 -40880388 + CT-rich Low_complexity Low_complexity 2 115 0 2 1219 374 284 56 39 chr9 83196566 83196797 -40879375 + MER34A1 LTR ERV1 280 514 -73 2 1219 719 304 68 29 chr9 83197011 83197292 -40878880 + B4 SINE B4 1 292 0 2 1219 25 0 0 0 chr9 83197378 83197403 -40878769 + AT_rich Low_complexity Low_complexity 1 25 0 2 1219 305 328 103 34 chr9 83199597 83199942 -40876230 + LTR82A LTR ERVL 10 435 -437 2 1219 180 0 0 0 chr9 83200770 83200790 -40875382 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 2 1219 977 207 19 14 chr9 83201560 83201771 -40874401 + B3 SINE B2 4 215 -1 2 1219 229 304 125 0 chr9 83202113 83202225 -40873947 + MER5C1 DNA MER1_type 134 259 -4 2 1219 247 232 0 0 chr9 83202705 83202761 -40873411 - B1F SINE Alu -88 61 6 2 1219 269 252 110 45 chr9 83202897 83203051 -40873121 + RSINE1 SINE B4 2 165 0 2 1219 278 211 28 14 chr9 83203242 83203314 -40872858 - ORR1E LTR MaLR -1 358 286 2 1219 329 277 57 25 chr9 83203384 83203506 -40872666 - ORR1E LTR MaLR -213 146 21 2 1219 549 265 8 0 chr9 83203558 83203675 -40872497 + RSINE1 SINE B4 29 146 -19 2 1219 205 387 0 0 chr9 83203839 83203963 -40872209 + A-rich Low_complexity Low_complexity 3 126 0 2 1219 875 141 141 5 chr9 83204030 83204215 -40871957 + ORR1B1 LTR MaLR 185 394 0 2 1219 217 132 0 0 chr9 83204328 83204366 -40871806 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1219 949 212 67 0 chr9 83204366 83204559 -40871613 - B3 SINE B2 -10 206 1 2 1219 242 176 19 19 chr9 83204577 83204629 -40871543 - L1M1 LINE L1 -424 5876 5825 3 1219 330 152 0 0 chr9 83204629 83204688 -40871484 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1219 593 292 68 0 chr9 83204719 83204880 -40871292 - B4A SINE B4 -4 288 117 3 1219 42 20 0 0 chr9 83205044 83205093 -40871079 + AT_rich Low_complexity Low_complexity 1 49 0 3 1219 9138 84 2 5 chr9 83205101 83207114 -40869058 + L1_Mus3 LINE L1 4626 6635 -3 3 1219 726 278 143 92 chr9 83207170 83207527 -40868645 + MTE2a LTR MaLR 5 379 0 3 1219 386 305 21 0 chr9 83208524 83208665 -40867507 + CT-rich Low_complexity Low_complexity 2 145 0 3 1219 307 131 23 23 chr9 83209065 83209151 -40867021 + (TCTCTG)n Simple_repeat Simple_repeat 4 89 0 3 1219 397 265 206 0 chr9 83209152 83209288 -40866884 - RSINE1 SINE B4 0 165 2 3 1219 600 119 0 0 chr9 83209390 83209499 -40866673 + (TG)n Simple_repeat Simple_repeat 1 109 0 3 1219 435 314 16 0 chr9 83211703 83211824 -40864348 - ID_B1 SINE B4 -2 222 100 3 1219 651 273 90 6 chr9 83213485 83213662 -40862510 - ID_B1 SINE B4 -6 218 27 3 1219 250 327 30 0 chr9 83213752 83213853 -40862319 - MER3 DNA MER1_type -99 110 7 3 1219 629 167 0 0 chr9 83213924 83214026 -40862146 - B1_Mur1 SINE Alu -29 120 19 3 1219 591 148 147 8 chr9 83214043 83214172 -40862000 - B1_Mus1 SINE Alu 0 148 2 3 1219 245 297 0 0 chr9 83214431 83214495 -40861677 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1219 233 325 177 57 chr9 83214946 83215187 -40860985 - MLT2B2 LTR ERVL -198 317 39 3 1219 220 264 0 19 chr9 83215187 83215241 -40860931 + CT-rich Low_complexity Low_complexity 1 53 0 3 1219 309 51 0 0 chr9 83215342 83215381 -40860791 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1219 219 372 27 31 chr9 83216135 83216352 -40859820 - MIRb SINE MIR -3 259 49 3 1219 252 0 0 0 chr9 83216423 83216451 -40859721 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1219 22 0 0 0 chr9 83217328 83217350 -40858822 + AT_rich Low_complexity Low_complexity 1 22 0 3 1219 576 0 0 0 chr9 83219909 83219973 -40856199 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1219 281 169 17 0 chr9 83220054 83220113 -40856059 + GA-rich Low_complexity Low_complexity 3 62 0 3 1219 304 294 75 23 chr9 83220551 83220725 -40855447 + L4 LINE RTE 1582 1764 -265 3 1219 23 54 0 0 chr9 83221749 83221786 -40854386 + AT_rich Low_complexity Low_complexity 1 37 0 3 1219 243 88 0 0 chr9 83221790 83221824 -40854348 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 3 1219 310 91 36 0 chr9 83221865 83221920 -40854252 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1219 375 23 0 0 chr9 83222682 83222726 -40853446 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1219 336 289 77 72 chr9 83223336 83223530 -40852642 - B3A SINE B2 -1 197 3 3 1219 760 274 133 38 chr9 83223535 83224145 -40852027 - L1M2 LINE L1 -1597 4546 3879 3 1219 232 194 127 16 chr9 83224203 83224266 -40851906 + MTC LTR MaLR 5 74 -347 3 1219 408 179 0 0 chr9 83225239 83225317 -40850855 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 1219 303 28 0 0 chr9 83225517 83225553 -40850619 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1219 377 210 29 0 chr9 83225564 83225702 -40850470 + GA-rich Low_complexity Low_complexity 2 143 0 3 1219 622 234 65 0 chr9 83226040 83226271 -40849901 - L1M2 LINE L1 -3622 2521 2276 3 1219 2347 192 19 42 chr9 83226549 83227070 -40849102 + RLTR11A2 LTR ERVK 1 509 -18 3 1219 1146 69 7 0 chr9 83227413 83227558 -40848614 + B1_Mus2 SINE Alu 2 147 0 3 1219 493 238 0 47 chr9 83227685 83227791 -40848381 + PB1D7 SINE Alu 20 120 0 3 1219 405 287 37 52 chr9 83227811 83227947 -40848225 + ID_B1 SINE B4 91 224 0 3 1219 923 127 13 0 chr9 83227958 83228116 -40848056 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 3 1219 704 218 186 10 chr9 83228597 83228875 -40847297 + MTEa LTR MaLR 5 331 -48 3 1219 2462 162 10 2 chr9 83228880 83229289 -40846883 - MTC LTR MaLR -9 412 1 3 1219 286 298 47 62 chr9 83229364 83229493 -40846679 + Charlie2b DNA MER1_type 201 327 -2455 3 1219 333 358 81 107 chr9 83229490 83229762 -40846410 + Charlie2b DNA MER1_type 603 867 -1915 3 1219 1509 266 111 36 chr9 83229855 83230513 -40845659 + Charlie2b DNA MER1_type 1052 1758 -1024 3 1219 456 51 0 0 chr9 83230529 83230588 -40845584 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 3 152 671 307 43 60 chr9 83230673 83230905 -40845267 - B4A SINE B4 -56 236 9 3 1220 571 191 60 17 chr9 83230942 83231059 -40845113 - B1F2 SINE Alu -25 124 3 3 1220 2246 297 73 95 chr9 83231198 83232839 -40843333 - Lx8 LINE L1 -227 7246 5643 3 1220 361 140 0 0 chr9 83232842 83232899 -40843273 + Lx9 LINE L1 7410 7466 -178 3 1220 258 322 0 0 chr9 83232899 83233014 -40843158 + (TCTCTG)n Simple_repeat Simple_repeat 5 119 0 3 1220 592 168 7 39 chr9 83233062 83233217 -40842955 + Lx9 LINE L1 7490 7639 -5 3 1220 234 273 13 13 chr9 83233217 83233295 -40842877 + L1_Rod LINE L1 5518 5595 -252 3 1220 2744 226 7 0 chr9 83233316 83233882 -40842290 - Lx9 LINE L1 -522 7122 6553 3 1220 823 216 6 0 chr9 83233912 83234093 -40842079 - L1_Mur3 LINE L1 -1532 4348 4167 3 1220 1345 207 152 51 chr9 83234093 83234387 -40841785 + RMER6C LTR ERVK 1 346 -344 3 1220 210 37 0 0 chr9 83234387 83234414 -40841758 + (CAGTT)n Simple_repeat Simple_repeat 4 30 0 3 1220 1345 238 105 74 chr9 83234414 83234669 -40841503 + RMER6C LTR ERVK 347 720 0 3 1220 1767 280 42 75 chr9 83234669 83235636 -40840536 - L1_Mur3 LINE L1 -1708 4172 3238 3 1220 406 230 92 50 chr9 83235643 83235762 -40840410 - B3A SINE B2 -15 183 60 3 1220 666 236 126 13 chr9 83237181 83237340 -40838832 - B3 SINE B2 -32 184 8 3 1220 31 0 0 0 chr9 83237475 83237506 -40838666 + AT_rich Low_complexity Low_complexity 1 31 0 3 1220 312 27 0 0 chr9 83237575 83237612 -40838560 + (TTAGGG)n Simple_repeat Simple_repeat 4 40 0 3 1220 1292 249 63 52 chr9 83237701 83238253 -40837919 + L1MB5 LINE L1 5617 6174 0 3 1220 1032 119 11 6 chr9 83238445 83238623 -40837549 + (GAA)n Simple_repeat Simple_repeat 1 179 0 3 1220 378 0 0 0 chr9 83238623 83238665 -40837507 + (GGA)n Simple_repeat Simple_repeat 1 42 0 3 1220 218 106 0 21 chr9 83239322 83239370 -40836802 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 3 1220 1557 17 0 0 chr9 83239524 83239704 -40836468 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1220 853 257 48 10 chr9 83240133 83240341 -40835831 - B3 SINE B2 0 216 1 3 1220 378 0 0 0 chr9 83241127 83241169 -40835003 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1220 245 344 21 0 chr9 83241215 83241308 -40834864 + MER2 DNA MER2_type 120 214 -131 3 1220 198 0 0 0 chr9 83242177 83242199 -40833973 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 3 1220 264 217 35 35 chr9 83243136 83243222 -40832950 + CT-rich Low_complexity Low_complexity 3 88 0 3 1220 205 176 0 0 chr9 83243482 83243516 -40832656 + GA-rich Low_complexity Low_complexity 3 36 0 3 1220 204 250 0 0 chr9 83244497 83244537 -40831635 + L3 LINE CR1 4429 4468 -21 3 1220 549 0 0 0 chr9 83245373 83245434 -40830738 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1220 698 192 10 14 chr9 83245984 83246285 -40829887 + (CA)n Simple_repeat Simple_repeat 1 299 0 3 1220 231 97 0 0 chr9 83246285 83246316 -40829856 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1220 409 227 29 0 chr9 83246317 83246489 -40829683 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 1220 369 0 67 0 chr9 83246490 83246535 -40829637 + HAL1-3A_ME LINE L1 1976 2023 -835 3 1220 412 229 203 0 chr9 83247948 83248066 -40828106 + B1F SINE Alu 1 142 -7 3 1220 192 77 0 0 chr9 83248225 83248251 -40827921 + (GGA)n Simple_repeat Simple_repeat 2 27 0 3 1220 21 36 0 0 chr9 83248316 83248344 -40827828 + AT_rich Low_complexity Low_complexity 1 28 0 3 1220 257 344 65 13 chr9 83248570 83248723 -40827449 - L3 LINE CR1 -141 4348 4188 3 1220 666 295 87 21 chr9 83248723 83248965 -40827207 + MER2 DNA MER2_type 1 258 -87 3 1220 1250 60 59 21 chr9 83249026 83249213 -40826959 - B2_Mm2 SINE B2 0 195 2 3 1220 970 115 109 0 chr9 83249343 83249508 -40826664 + URR1A DNA MER1_type 44 226 0 3 1220 29 70 0 0 chr9 83251048 83251105 -40825067 + AT_rich Low_complexity Low_complexity 1 57 0 3 1220 240 290 111 111 chr9 83251611 83251801 -40824371 - L2 LINE L2 -556 2863 2674 3 1220 292 69 33 33 chr9 83252620 83252680 -40823492 + (TCTCTG)n Simple_repeat Simple_repeat 2 61 0 3 1220 331 324 10 0 chr9 83252686 83252788 -40823384 - PB1D10 SINE Alu -14 103 1 3 1220 197 83 28 0 chr9 83252816 83252852 -40823320 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1220 398 239 23 0 chr9 83252999 83253087 -40823085 - B4A SINE B4 -197 95 6 3 1220 784 290 115 18 chr9 83253241 83253788 -40822384 - L1MB1 LINE L1 -306 6006 5391 3 1220 281 161 36 24 chr9 83253894 83253977 -40822195 + GA-rich Low_complexity Low_complexity 2 85 0 3 1220 297 253 12 81 chr9 83254032 83254118 -40822054 - L2a LINE L2 0 3426 3347 3 1220 1326 120 0 0 chr9 83255761 83255952 -40820220 - B2_Mm2 SINE B2 -4 191 1 3 1220 303 253 39 122 chr9 83256063 83256243 -40819929 - L1M5 LINE L1 -2900 3246 3082 3 1220 2414 167 17 7 chr9 83256545 83256962 -40819210 - MTC LTR MaLR 0 421 1 3 1220 1817 144 125 9 chr9 83257311 83257640 -40818532 + ORR1B2 LTR MaLR 1 367 0 3 1220 258 287 114 22 chr9 83257743 83258190 -40817982 + L1MEe LINE L1 1715 2168 -2137 3 1220 273 319 43 16 chr9 83258397 83258537 -40817635 + L1M2 LINE L1 2076 2237 -3906 3 1220 1973 75 4 11 chr9 83258537 83258808 -40817364 + L1Md_F2 LINE L1 6313 6581 -1 3 1220 228 346 24 59 chr9 83258808 83258863 -40817309 + L1M2 LINE L1 2238 2290 -3853 3 1220 296 161 32 16 chr9 83258877 83258940 -40817232 + 4.5SRNA scRNA scRNA 25 88 -6 3 1220 545 99 25 0 chr9 83258886 83258967 -40817205 + PB1D9 SINE Alu 38 120 0 3 1220 291 54 0 0 chr9 83258967 83259004 -40817168 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4 1220 370 279 0 0 chr9 83259017 83259139 -40817033 + L1_Mur3 LINE L1 3246 3367 -2513 4 1220 1696 197 77 19 chr9 83259153 83259530 -40816642 + MTD LTR MaLR 7 405 -14 4 1220 1123 273 88 44 chr9 83259543 83260159 -40816013 + L1M2 LINE L1 3405 4047 -2096 3 1220 697 279 101 21 chr9 83260173 83260608 -40815564 - L1M2 LINE L1 -2403 4442 3973 4 1220 375 245 88 23 chr9 83260663 83260880 -40815292 - L1M2 LINE L1 -3957 2892 2662 4 1220 33 43 0 0 chr9 83260934 83260981 -40815191 + AT_rich Low_complexity Low_complexity 1 47 0 4 1220 201 74 0 0 chr9 83260985 83261012 -40815160 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1220 333 289 24 12 chr9 83261012 83261096 -40815076 - RSINE1 SINE B4 -44 121 37 4 1220 261 229 58 35 chr9 83261110 83261196 -40814976 - L1M2 LINE L1 -4278 2571 2484 4 1220 245 89 22 0 chr9 83261405 83261450 -40814722 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 4 1220 234 305 115 13 chr9 83261468 83261624 -40814548 - L1M2 LINE L1 -4436 2413 2242 4 1220 23 33 0 0 chr9 83261721 83261751 -40814421 + AT_rich Low_complexity Low_complexity 1 30 0 4 1220 879 263 9 18 chr9 83261951 83262168 -40814004 - B3 SINE B2 -1 215 1 4 1220 705 106 0 0 chr9 83262218 83262322 -40813850 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 4 1220 537 330 98 58 chr9 83265645 83265922 -40810250 + B4A SINE B4 5 292 0 4 1220 455 302 79 12 chr9 83267872 83268036 -40808136 + B4A SINE B4 13 187 -105 4 1220 507 17 0 0 chr9 83268592 83268652 -40807520 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1220 307 239 18 0 chr9 83268693 83268802 -40807370 + GA-rich Low_complexity Low_complexity 2 112 0 4 1220 1276 77 32 11 chr9 83268907 83269092 -40807080 - B2_Mm2 SINE B2 -6 189 1 4 1220 286 295 107 15 chr9 83270398 83270529 -40805643 - MER103 DNA DNA -16 150 8 4 1220 657 279 76 22 chr9 83270795 83271070 -40805102 + B4 SINE B4 1 290 -2 4 1220 351 0 0 0 chr9 83271114 83271153 -40805019 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1220 322 179 0 0 chr9 83271288 83271344 -40804828 + HAL1-2a_MD LINE L1 2412 2467 -557 4 1220 749 171 13 79 chr9 83271349 83271501 -40804671 - B1_Mur4 SINE Alu -7 143 2 4 1220 370 284 147 0 chr9 83272386 83272502 -40803670 + B1_Mur1 SINE Alu 2 134 -15 4 1220 222 65 0 0 chr9 83272947 83272978 -40803194 + B3 SINE B2 3 33 -183 4 1220 227 313 0 0 chr9 83273591 83273658 -40802514 + L1M7 LINE L1 1949 2015 -4296 4 1220 407 287 106 24 chr9 83274027 83274234 -40801938 + L1M7 LINE L1 2332 2555 -3660 4 1220 378 0 0 0 chr9 83274327 83274369 -40801803 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1220 320 234 52 0 chr9 83274755 83274832 -40801340 + ID4 SINE ID 1 81 -2 4 1220 949 214 10 38 chr9 83275006 83275215 -40800957 + B3 SINE B2 1 203 -13 4 1220 561 12 49 0 chr9 83275217 83275298 -40800874 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 4 1220 243 0 0 0 chr9 83275306 83275333 -40800839 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 4 1220 519 321 22 98 chr9 83275385 83275568 -40800604 + ID_B1 SINE B4 8 176 -48 4 1220 405 0 0 0 chr9 83275619 83275664 -40800508 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1220 907 143 7 7 chr9 83276014 83276162 -40800010 + B1_Mus1 SINE Alu 1 148 0 4 1220 333 118 0 0 chr9 83276165 83276216 -40799956 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 4 1220 216 0 0 0 chr9 83276463 83276487 -40799685 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1220 625 174 78 28 chr9 83276489 83276631 -40799541 - B3 SINE B2 0 216 68 4 1220 1689 83 19 4 chr9 83277263 83277529 -40798643 - Lx2A1 LINE L1 0 7008 6739 4 1220 671 249 62 10 chr9 83278259 83278454 -40797718 + B3 SINE B2 9 213 -3 4 1220 344 355 44 5 chr9 83278468 83278672 -40797500 - MLT1C LTR MaLR -50 417 206 4 1220 3268 208 97 3 chr9 83279517 83280362 -40795810 - RMER1B Other Other 0 1066 34 4 1220 294 319 8 8 chr9 83280609 83280726 -40795446 + PB1D10 SINE Alu 1 117 0 4 1220 439 125 37 12 chr9 83282439 83282520 -40793652 - ORR1B2 LTR MaLR -4 363 281 4 1220 579 164 188 0 chr9 83282506 83282634 -40793538 - ORR1B2 LTR MaLR -215 152 1 4 1220 414 0 0 0 chr9 83282836 83282882 -40793290 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1220 540 0 0 0 chr9 83283058 83283118 -40793054 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1220 233 233 0 48 chr9 83283290 83283353 -40792819 - MER5A DNA MER1_type -1 188 129 4 1220 258 81 0 0 chr9 83284436 83284473 -40791699 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1220 603 212 165 99 chr9 83284981 83285284 -40790888 - Lx8 LINE L1 -2 7471 7149 4 1220 222 37 0 0 chr9 83286231 83286258 -40789914 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1220 25 90 0 0 chr9 83288695 83288762 -40787410 + AT_rich Low_complexity Low_complexity 1 67 0 4 1220 829 149 75 0 chr9 83290126 83290260 -40785912 + B1_Mur4 SINE Alu 3 146 -4 4 1220 1194 68 0 0 chr9 83290360 83290508 -40785664 + B1_Mus1 SINE Alu 1 148 0 4 1220 198 0 0 0 chr9 83290508 83290530 -40785642 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1220 200 195 0 0 chr9 83290781 83290822 -40785350 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1220 250 114 0 0 chr9 83290948 83290983 -40785189 - L1Md_T LINE L1 -439 6143 6109 4 1220 2298 54 20 26 chr9 83290983 83291289 -40784883 + L1_Mus1 LINE L1 6264 6567 0 4 1220 635 296 204 10 chr9 83292803 83293117 -40783055 + MTEb LTR MaLR 5 379 0 4 1220 515 226 187 6 chr9 83293860 83294042 -40782130 - B3 SINE B2 0 216 2 4 1220 221 293 0 39 chr9 83294453 83294556 -40781616 + GA-rich Low_complexity Low_complexity 1 99 0 4 1220 291 54 0 0 chr9 83296191 83296228 -40779944 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1220 335 296 64 74 chr9 83296242 83296502 -40779670 + L1M5 LINE L1 5296 5557 -2438 4 1220 479 216 35 18 chr9 83296766 83296879 -40779293 + PB1D10 SINE Alu 3 117 0 4 1220 237 24 71 0 chr9 83297757 83297799 -40778373 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 4 1220 769 258 105 103 chr9 83298996 83299623 -40776549 + L1M2 LINE L1 2507 3177 -2966 4 1220 661 169 113 0 chr9 83299625 83299749 -40776423 + B1_Mus1 SINE Alu 1 138 -10 4 1220 1126 82 0 0 chr9 83299749 83299895 -40776277 + B1_Mus1 SINE Alu 3 148 0 4 1220 519 45 0 0 chr9 83299939 83300005 -40776167 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 4 1220 387 310 54 37 chr9 83300129 83300424 -40775748 + L1M2 LINE L1 3249 3548 -2595 4 1220 268 120 0 20 chr9 83300430 83300481 -40775691 - MTEb LTR MaLR -20 359 310 4 1220 234 196 22 0 chr9 83300487 83300533 -40775639 + L1MA4 LINE L1 5676 5722 -575 4 1220 413 143 9 54 chr9 83300553 83300664 -40775508 + T-rich Low_complexity Low_complexity 3 108 0 4 1220 642 251 213 11 chr9 83300678 83300964 -40775208 + MTC LTR MaLR 26 369 -52 4 1220 558 158 24 30 chr9 83301015 83301184 -40774988 + (CATA)n Simple_repeat Simple_repeat 4 171 0 4 1220 466 171 11 54 chr9 83301203 83301388 -40774784 + (CATA)n Simple_repeat Simple_repeat 4 180 0 4 1220 400 259 91 25 chr9 83301393 83301575 -40774597 + L1MA4 LINE L1 5787 5986 -314 4 1220 695 233 6 45 chr9 83303807 83303964 -40772208 - RSINE1 SINE B4 0 165 15 4 1220 26 30 0 0 chr9 83304284 83304317 -40771855 + AT_rich Low_complexity Low_complexity 1 33 0 4 1220 230 234 15 15 chr9 83305144 83305209 -40770963 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1220 3329 43 5 5 chr9 83305210 83305606 -40770566 - MTA_Mm LTR MaLR 0 396 1 4 1220 429 109 0 0 chr9 83305606 83305670 -40770502 + (TATG)n Simple_repeat Simple_repeat 2 65 0 4 1220 412 239 81 40 chr9 83305798 83305946 -40770226 + B3A SINE B2 6 159 -36 4 1220 576 315 0 0 chr9 83306076 83306219 -40769953 + RSINE1 SINE B4 4 146 -19 4 1220 1140 51 22 17 chr9 83306313 83306492 -40769680 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1220 189 94 0 0 chr9 83306496 83306528 -40769644 + (ACTG)n Simple_repeat Simple_repeat 3 34 0 4 1220 703 280 51 32 chr9 83307447 83307732 -40768440 + Charlie1a DNA MER1_type 977 1265 -190 4 1220 884 130 7 46 chr9 83307732 83307885 -40768287 + B1_Mus1 SINE Alu 1 147 -1 4 1220 703 280 51 32 chr9 83307885 83307913 -40768259 + Charlie1a DNA MER1_type 1266 1296 -159 4 1220 648 246 86 0 chr9 83307900 83308087 -40768085 - B3 SINE B2 0 216 14 4 1220 297 228 47 81 chr9 83308112 83308260 -40767912 + Charlie1a DNA MER1_type 1274 1416 -39 4 1220 2818 73 54 15 chr9 83308684 83309073 -40767099 + MTB_Mm LTR MaLR 1 404 -3 4 1220 408 20 0 0 chr9 83309090 83309139 -40767033 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 4 1220 870 125 44 7 chr9 83309447 83309584 -40766588 - B1_Mus1 SINE Alu -6 142 1 4 1220 3015 254 71 71 chr9 83309934 83311223 -40764949 + L1_Rod LINE L1 4558 5846 -1 4 1220 1712 214 118 13 chr9 83311228 83311696 -40764476 + RLTR11A LTR ERVK 7 523 -5 4 1220 972 302 36 36 chr9 83311861 83312353 -40763819 + Lx9 LINE L1 6971 7469 -175 4 1220 183 80 0 0 chr9 83312685 83312710 -40763462 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1220 303 270 111 7 chr9 83313448 83313601 -40762571 + L1MD1 LINE L1 4479 4647 -1499 4 1220 500 264 16 0 chr9 83313611 83313736 -40762436 + B3A SINE B2 1 127 -71 4 1220 465 19 0 0 chr9 83313739 83313793 -40762379 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1220 226 309 128 56 chr9 83313873 83314123 -40762049 + L1MD1 LINE L1 4760 5027 -1119 4 1220 614 288 78 65 chr9 83314219 83315098 -40761074 + L1MD1 LINE L1 5047 5955 -287 4 1220 306 0 0 0 chr9 83315174 83315208 -40760964 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1220 261 0 0 0 chr9 83315208 83315236 -40760936 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1220 250 289 100 0 chr9 83315457 83315547 -40760625 - PB1D10 SINE Alu -17 100 2 4 1220 787 249 112 38 chr9 83316019 83316286 -40759886 - B4 SINE B4 -5 287 1 4 1220 496 248 56 14 chr9 83316324 83316467 -40759705 - B1_Mur1 SINE Alu 0 149 1 4 1220 320 0 25 0 chr9 83317236 83317276 -40758896 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1220 1103 90 0 7 chr9 83317307 83317453 -40758719 + B1_Mus2 SINE Alu 1 145 -2 4 1220 207 0 0 0 chr9 83317458 83317481 -40758691 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1220 418 230 11 11 chr9 83317518 83317606 -40758566 + PB1D9 SINE Alu 2 89 -31 5 1220 810 274 40 75 chr9 83317676 83317929 -40758243 + B4 SINE B4 10 253 -39 5 1220 192 97 0 0 chr9 83317938 83317969 -40758203 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1220 214 152 34 0 chr9 83318015 83318074 -40758098 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1220 877 191 18 45 chr9 83318240 83318460 -40757712 + ORR1C2 LTR MaLR 149 362 -22 5 1220 1578 158 177 16 chr9 83318494 83318816 -40757356 + ORR1D1 LTR MaLR 1 374 0 5 1220 32 26 0 0 chr9 83319393 83319432 -40756740 + AT_rich Low_complexity Low_complexity 1 39 0 5 1220 23 54 0 0 chr9 83320671 83320708 -40755464 + AT_rich Low_complexity Low_complexity 1 37 0 5 1220 866 166 7 0 chr9 83321026 83321165 -40755007 + B1_Mus1 SINE Alu 2 141 -7 5 1220 300 91 0 0 chr9 83321230 83321274 -40754898 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 5 1220 344 287 87 0 chr9 83321767 83321882 -40754290 + PB1 SINE Alu 3 127 0 5 1220 335 226 40 73 chr9 83322045 83322169 -40754003 + MLT1A1 LTR MaLR 268 387 -21 5 1220 263 315 122 17 chr9 83322252 83322433 -40753739 + MER3 DNA MER1_type 2 201 -8 5 1220 255 253 0 0 chr9 83322692 83322787 -40753385 + (CA)n Simple_repeat Simple_repeat 1 95 0 5 1220 495 107 0 0 chr9 83323025 83323100 -40753072 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 1220 186 133 0 0 chr9 83323151 83323181 -40752991 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1220 1169 48 0 20 chr9 83323184 83323334 -40752838 - B1_Mus1 SINE Alu 0 148 2 5 1220 349 310 84 112 chr9 83323344 83323853 -40752319 + L1MC5 LINE L1 6705 7199 -762 5 1220 371 287 72 33 chr9 83324149 83324329 -40751843 + L1MC5 LINE L1 7611 7797 -164 5 1220 423 0 0 0 chr9 83324417 83324464 -40751708 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1220 249 347 0 0 chr9 83324469 83324541 -40751631 - tRNA-Ala-GCG tRNA tRNA -3 72 1 5 1220 267 297 16 0 chr9 83324478 83324542 -40751630 - ID4_ SINE ID -13 70 6 5 1220 261 304 36 60 chr9 83324877 83325045 -40751127 - RMER4B LTR ERVK -396 189 26 5 1220 507 296 23 23 chr9 83325142 83325315 -40750857 + B4A SINE B4 114 286 -6 5 1220 742 284 78 0 chr9 83325710 83325914 -40750258 + Tigger7 DNA MER2_type 45 264 -2227 5 1220 238 211 84 0 chr9 83325957 83326028 -40750144 - Tigger7 DNA MER2_type -2362 129 53 5 1220 437 287 148 0 chr9 83326333 83326556 -40749616 + Tigger7 DNA MER2_type 2236 2491 0 5 1220 272 322 86 48 chr9 83328058 83328267 -40747905 + L2 LINE L2 2579 2795 -624 5 1220 411 225 125 0 chr9 83328770 83328890 -40747282 - ID_B1 SINE B4 -8 216 82 5 1220 3311 184 46 43 chr9 83328949 83329648 -40746524 + Lx7 LINE L1 6753 7453 -243 5 1220 351 243 0 0 chr9 83329657 83329760 -40746412 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 1220 524 267 105 66 chr9 83329772 83329917 -40746255 + Lx7 LINE L1 7426 7573 -123 5 1220 441 0 0 0 chr9 83329917 83329966 -40746206 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1220 524 267 105 66 chr9 83329966 83330077 -40746095 + Lx7 LINE L1 7574 7692 -4 5 1220 201 243 0 0 chr9 83330261 83330298 -40745874 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1220 26 30 0 0 chr9 83330390 83330423 -40745749 + AT_rich Low_complexity Low_complexity 1 33 0 5 1220 196 80 94 57 chr9 83330828 83330881 -40745291 - MIR SINE MIR -137 71 17 5 1220 397 260 133 11 chr9 83331697 83331925 -40744247 + L1MA4 LINE L1 5626 5936 -364 5 1220 234 188 237 23 chr9 83332052 83332183 -40743989 + Charlie5 DNA MER1_type 2448 2606 -18 5 1220 761 53 124 0 chr9 83332191 83332304 -40743868 + B1_Mus1 SINE Alu 22 148 0 5 1220 201 74 0 0 chr9 83332304 83332331 -40743841 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1220 299 317 63 21 chr9 83332555 83332697 -40743475 - L2 LINE L2 -768 2651 2504 5 1220 1022 223 5 15 chr9 83333387 83333587 -40742585 - B3 SINE B2 -17 199 2 5 1220 291 54 0 0 chr9 83333746 83333783 -40742389 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1220 180 0 0 0 chr9 83334455 83334475 -40741697 + (C)n Simple_repeat Simple_repeat 1 20 0 5 1220 405 164 0 0 chr9 83336332 83336405 -40739767 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1220 268 256 58 47 chr9 83336498 83336584 -40739588 + PB1D10 SINE Alu 31 117 0 5 1220 1709 273 16 50 chr9 83337057 83337574 -40738598 + RMER1B Other Other 10 508 -558 5 1220 979 261 30 69 chr9 83337558 83337891 -40738281 + RMER1A Other Other 15 334 -696 5 1220 459 164 0 37 chr9 83337882 83337964 -40738208 - RMER1A Other Other -181 849 771 5 1220 447 174 278 12 chr9 83338006 83338076 -40738096 + RMER1A Other Other 817 911 -119 5 1220 441 0 0 0 chr9 83338076 83338125 -40738047 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1220 447 174 278 12 chr9 83338125 83338223 -40737949 + RMER1A Other Other 912 1029 -1 5 1220 1123 96 25 6 chr9 83338533 83338691 -40737481 + B2_Mm2 SINE B2 12 172 -23 5 1220 374 221 87 39 chr9 83339003 83339130 -40737042 - B1F1 SINE Alu 0 149 17 5 1220 184 292 14 84 chr9 83339292 83339363 -40736809 + MIR SINE MIR 20 85 -177 5 1220 599 176 8 0 chr9 83339372 83339497 -40736675 + CT-rich Low_complexity Low_complexity 2 127 0 5 1220 285 29 0 0 chr9 83340164 83340198 -40735974 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1220 224 115 58 0 chr9 83340256 83340308 -40735864 + (TCTCTG)n Simple_repeat Simple_repeat 3 57 0 5 1220 397 173 14 14 chr9 83340338 83340479 -40735693 + (TCTG)n Simple_repeat Simple_repeat 2 142 0 5 1220 394 221 43 0 chr9 83340517 83340616 -40735556 - PB1D7 SINE Alu -1 119 17 5 1220 225 316 136 8 chr9 83340920 83341038 -40735134 + MER63B DNA AcHobo 303 435 -1 5 1220 24 32 0 0 chr9 83341121 83341152 -40735020 + AT_rich Low_complexity Low_complexity 1 31 0 5 1220 23 33 0 0 chr9 83341296 83341326 -40734846 + AT_rich Low_complexity Low_complexity 1 30 0 5 1220 435 38 0 0 chr9 83342312 83342365 -40733807 + (TCC)n Simple_repeat Simple_repeat 3 55 0 5 1220 794 250 40 10 chr9 83342365 83342567 -40733605 - ID_B1 SINE B4 -12 212 5 5 1220 243 0 0 0 chr9 83344003 83344030 -40732142 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 5 1220 786 216 0 7 chr9 83344039 83344188 -40731984 - B1_Mur2 SINE Alu -1 148 1 5 1220 197 159 0 22 chr9 83344356 83344401 -40731771 + CT-rich Low_complexity Low_complexity 2 45 0 5 1220 1125 207 36 47 chr9 83344698 83344977 -40731195 - ORR1D1 LTR MaLR -14 360 85 5 1220 706 139 156 0 chr9 83345126 83345248 -40730924 - B3 SINE B2 -75 141 1 5 1220 428 288 194 73 chr9 83345248 83345451 -40730721 - B4A SINE B4 -64 228 1 5 1220 215 283 17 0 chr9 83345669 83345729 -40730443 + B4A SINE B4 85 145 -147 5 1220 433 115 0 22 chr9 83345880 83345969 -40730203 + (CCCCAG)n Simple_repeat Simple_repeat 1 87 0 5 1220 441 267 16 55 chr9 83346099 83346226 -40729946 + RSINE1 SINE B4 2 123 -42 5 1220 222 279 33 0 chr9 83347650 83347711 -40728461 - ID4_ SINE ID -1 82 20 5 1220 420 55 0 0 chr9 83347755 83347810 -40728362 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1220 22 0 0 0 chr9 83348152 83348174 -40727998 + AT_rich Low_complexity Low_complexity 1 22 0 5 1220 241 330 33 33 chr9 83349376 83349498 -40726674 + MamRep434 DNA TcMar 14 135 -291 5 1220 5723 170 37 28 chr9 83350527 83351580 -40724592 + RMER1B Other Other 3 1065 -1 5 1220 409 181 10 87 chr9 83351883 83351986 -40724186 - MT2B LTR ERVL -339 262 168 5 1220 604 141 0 0 chr9 83351897 83351989 -40724183 - B1_Mur3 SINE Alu -57 92 1 5 1220 487 274 59 125 chr9 83352347 83352776 -40723396 - RMER2 LTR ERV1 -23 544 5 5 1220 296 315 63 47 chr9 83352824 83353014 -40723158 + L1MC4 LINE L1 7486 7678 -364 5 1220 416 164 58 60 chr9 83353092 83353215 -40722957 + PB1 SINE Alu 1 124 -3 5 1220 480 375 34 19 chr9 83353223 83353487 -40722685 + B4A SINE B4 4 271 -21 5 1220 273 167 0 0 chr9 83353585 83353639 -40722533 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 5 1220 264 312 0 36 chr9 83353655 83353738 -40722434 - MLT1A1 LTR MaLR -38 370 291 5 1220 1065 150 53 11 chr9 83354035 83354224 -40721948 + Lx7 LINE L1 5551 5747 -133 5 1220 36527 45 0 4 chr9 83354202 83359611 -40716561 + L1Md_T LINE L1 104 5589 -297 5 1220 9016 30 1 0 chr9 83359611 83360606 -40715566 + L1Md_T LINE L1 5590 6585 0 5 1220 2749 221 125 25 chr9 83360608 83361338 -40714834 + Lx7 LINE L1 5735 6537 -1159 5 1220 361 316 17 50 chr9 83361358 83361478 -40714694 + PB1D10 SINE Alu 2 117 0 5 1221 261 0 0 0 chr9 83361897 83361926 -40714246 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1221 522 0 0 0 chr9 83361926 83361983 -40714189 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1221 183 184 0 0 chr9 83362020 83362058 -40714114 + T-rich Low_complexity Low_complexity 1 38 0 5 1221 534 248 57 72 chr9 83362058 83362267 -40713905 - B4A SINE B4 -86 206 1 5 1221 244 244 22 65 chr9 83362294 83362386 -40713786 + MLT1A1 LTR MaLR 1 88 -320 5 1221 1994 145 58 0 chr9 83362414 83362725 -40713447 + ORR1A4 LTR MaLR 1 329 0 5 1221 765 0 0 0 chr9 83362847 83362932 -40713240 + (TCTCC)n Simple_repeat Simple_repeat 3 87 0 5 1221 258 270 21 63 chr9 83363102 83363197 -40712975 + MLT1A1 LTR MaLR 318 408 0 5 1221 1982 208 25 65 chr9 83364099 83364531 -40711641 - MTD LTR MaLR -4 415 1 5 1221 218 268 24 24 chr9 83364532 83364616 -40711556 + (TATATG)n Simple_repeat Simple_repeat 6 89 0 5 1221 300 310 69 0 chr9 83364653 83364740 -40711432 + MIRb SINE MIR 56 148 -120 5 1221 186 43 0 0 chr9 83364748 83364771 -40711401 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1221 24 32 0 0 chr9 83364773 83364804 -40711368 + AT_rich Low_complexity Low_complexity 1 31 0 5 1221 1501 231 40 12 chr9 83365036 83365361 -40710811 + ORR1D2 LTR MaLR 30 363 -7 5 1221 1303 275 90 19 chr9 83366160 83366672 -40709500 + Lx8 LINE L1 6924 7471 -2 5 1221 27 0 0 0 chr9 83366697 83366724 -40709448 + AT_rich Low_complexity Low_complexity 1 27 0 6 1221 2302 72 14 14 chr9 83366979 83367275 -40708897 - L1_Mus1 LINE L1 0 6567 6272 6 1221 858 150 0 0 chr9 83367435 83367562 -40708610 - B1_Mur4 SINE Alu -21 129 3 6 1221 302 237 38 0 chr9 83368814 83368910 -40707262 + L1MEg LINE L1 2172 2256 -4688 6 1221 2322 50 13 13 chr9 83369132 83369438 -40706734 + RLTR13B1 LTR ERVK 1 306 -587 6 1221 3129 41 0 0 chr9 83369438 83369807 -40706365 - L1Md_F2 LINE L1 -858 5025 4657 6 1221 4546 56 0 4 chr9 83369796 83370353 -40705819 + L1Md_F2 LINE L1 5032 5586 -297 6 1221 8506 45 9 2 chr9 83370353 83371330 -40704842 + L1Md_F2 LINE L1 5587 6570 -12 6 1221 4188 67 12 12 chr9 83371374 83371937 -40704235 + RLTR13B4 LTR ERVK 241 803 0 6 1221 949 219 219 114 chr9 83371983 83372181 -40703991 + ORR1D1 LTR MaLR 1 194 -180 6 1221 576 0 0 0 chr9 83372181 83372245 -40703927 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1221 949 227 194 113 chr9 83372245 83372388 -40703784 + ORR1D1 LTR MaLR 195 377 -2 6 1221 1020 303 61 62 chr9 83372388 83373205 -40702967 + L1MEg LINE L1 2845 3660 -3185 6 1221 835 318 16 27 chr9 83373215 83373590 -40702582 + L1_Mur3 LINE L1 5057 5427 -453 6 1221 484 226 50 40 chr9 83374072 83374222 -40701950 + L1MEg LINE L1 6133 6329 -664 6 1221 1519 146 271 27 chr9 83374485 83374780 -40701392 + ORR1B2 LTR MaLR 1 367 0 6 1221 784 189 102 12 chr9 83374815 83374981 -40701191 - URR1A DNA MER1_type -41 185 5 6 1221 345 273 22 22 chr9 83375758 83375848 -40700324 - B4A SINE B4 -30 262 173 6 1221 359 367 7 13 chr9 83376052 83376204 -40699968 - B4A SINE B4 -140 152 2 6 1221 655 231 181 49 chr9 83377118 83377323 -40698849 - MLT1A1 LTR MaLR 0 408 177 6 1221 182 37 0 36 chr9 83377576 83377604 -40698568 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 6 1221 724 257 68 6 chr9 83377743 83377919 -40698253 - ID_B1 SINE B4 -34 190 4 6 1221 849 177 0 28 chr9 83378356 83378501 -40697671 + B1_Mur1 SINE Alu 9 149 0 6 1221 2429 112 64 147 chr9 83379091 83379560 -40696612 + RLTR23 LTR ERV1 1 430 0 6 1221 900 238 35 26 chr9 83379644 83379873 -40696299 - Ricksha_c DNA MuDR -1178 870 640 6 1221 355 342 10 34 chr9 83379904 83380110 -40696062 + L1M5 LINE L1 5593 5793 -380 6 1221 766 253 90 93 chr9 83380113 83380392 -40695780 + B4A SINE B4 5 282 -10 6 1221 333 221 177 10 chr9 83380568 83380664 -40695508 - 5S rRNA rRNA -9 112 1 6 1221 633 274 0 0 chr9 83380737 83380872 -40695300 + RSINE1 SINE B4 9 143 -22 6 1221 348 24 0 0 chr9 83381176 83381217 -40694955 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1221 1638 73 5 0 chr9 83383147 83383352 -40692820 - L1_Mus1 LINE L1 0 6567 6362 6 1221 57 66 0 0 chr9 83383354 83383460 -40692712 + AT_rich Low_complexity Low_complexity 1 106 0 6 1221 613 236 16 16 chr9 83383748 83383873 -40692299 + PB1 SINE Alu 3 127 0 6 1221 394 285 158 74 chr9 83383972 83384351 -40691821 + Charlie4a DNA MER1_type 82 492 -16 6 1221 1020 241 54 50 chr9 83384494 83384773 -40691399 + Lx9 LINE L1 6939 7218 -426 6 1221 371 113 16 0 chr9 83384793 83384855 -40691317 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1221 2737 268 32 28 chr9 83384855 83385641 -40690531 + Lx8 LINE L1 6351 7139 -334 6 1221 229 303 54 34 chr9 83385679 83385826 -40690346 - L1M5 LINE L1 -3528 2618 2469 6 1221 1273 200 5 5 chr9 83386036 83386252 -40689920 - B3 SINE B2 0 216 1 6 1221 450 0 0 0 chr9 83386303 83386353 -40689819 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1221 1234 42 7 0 chr9 83387305 83387448 -40688724 + B1_Mus2 SINE Alu 3 146 -1 6 1221 2232 148 78 16 chr9 83388026 83388410 -40687762 - MTC LTR MaLR -8 413 6 6 1221 321 82 0 0 chr9 83388903 83388952 -40687220 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1221 376 337 181 12 chr9 83389094 83389260 -40686912 + B4A SINE B4 2 196 -96 6 1221 1866 188 40 80 chr9 83389260 83389710 -40686462 + MT2A LTR ERVL 3 434 -99 6 1221 288 275 29 0 chr9 83389714 83389783 -40686389 + B4A SINE B4 204 274 -18 6 1221 261 0 0 0 chr9 83389833 83389862 -40686310 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1221 213 194 0 0 chr9 83391007 83391043 -40685129 + polypyrimidine Low_complexity Low_complexity 3 38 0 6 1221 256 277 24 32 chr9 83392034 83392157 -40684015 + RMER20B LTR ERVK 482 603 -24 6 1221 930 208 156 15 chr9 83392991 83393260 -40682912 + MTD LTR MaLR 99 405 -14 6 1221 233 292 16 55 chr9 83393378 83393505 -40682667 + CT-rich Low_complexity Low_complexity 4 125 0 6 1221 364 192 13 0 chr9 83394935 83395008 -40681164 + MTD LTR MaLR 60 133 -286 6 1221 1463 193 85 26 chr9 83395008 83395222 -40680950 + ORR1D1 LTR MaLR 1 226 -148 6 1221 327 49 0 0 chr9 83395222 83395263 -40680909 + (CCTG)n Simple_repeat Simple_repeat 4 44 0 6 1221 1463 193 85 26 chr9 83395263 83395388 -40680784 + ORR1D1 LTR MaLR 227 360 -14 6 1221 572 136 31 85 chr9 83395448 83395577 -40680595 - B2_Mm1t SINE B2 -14 179 58 6 1221 546 299 63 0 chr9 83395591 83395765 -40680407 + MTD LTR MaLR 127 311 -108 6 1221 319 274 0 0 chr9 83395784 83395857 -40680315 - ID4 SINE ID -4 79 7 6 1221 1482 231 18 55 chr9 83396094 83396176 -40679996 - ORR1D1 LTR MaLR 0 374 299 6 1221 2350 167 12 2 chr9 83396176 83396579 -40679593 + MTB_Mm LTR MaLR 1 407 0 6 1221 1482 231 18 55 chr9 83396579 83396876 -40679296 - ORR1D1 LTR MaLR -76 298 9 6 1221 318 304 83 60 chr9 83396939 83397072 -40679100 - MER34A LTR ERV1 -431 140 5 6 1221 237 325 0 0 chr9 83398966 83399049 -40677123 - MIR SINE MIR -60 202 120 6 1221 1394 252 82 43 chr9 83399277 83399791 -40676381 - RMER5 LTR ERV1 0 534 1 6 1221 694 277 51 0 chr9 83399911 83400146 -40676026 - MER2 DNA MER2_type -26 319 73 6 1221 335 273 119 38 chr9 83401723 83401883 -40674289 + L1M5 LINE L1 5156 5328 -818 6 1221 1373 271 211 28 chr9 83401941 83403439 -40672733 + L1MB8 LINE L1 3827 5644 -530 6 1221 431 267 16 49 chr9 83403445 83403538 -40672634 + ORR1E LTR MaLR 6 94 -265 6 1221 317 283 49 42 chr9 83403538 83403682 -40672490 - RLTR23 LTR ERV1 0 430 286 6 1221 848 245 56 8 chr9 83404024 83404275 -40671897 + ORR1E LTR MaLR 97 359 0 6 1221 1047 279 91 27 chr9 83404276 83404759 -40671413 + L1MB8 LINE L1 5640 6153 -25 6 1221 234 239 0 0 chr9 83405199 83405245 -40670927 + G-rich Low_complexity Low_complexity 4 49 0 6 1221 180 0 0 0 chr9 83405277 83405297 -40670875 + (CTG)n Simple_repeat Simple_repeat 1 20 0 6 1221 213 250 31 0 chr9 83405531 83405595 -40670577 + B4A SINE B4 82 147 -145 6 1221 314 180 16 16 chr9 83405538 83405597 -40670575 + B1_Mur4 SINE Alu 6 64 -86 6 1221 2619 165 93 9 chr9 83405597 83406023 -40670149 + RMER4B LTR ERVK 1 444 -141 6 1221 3562 18 2 0 chr9 83406023 83406418 -40669754 + MTA_Mm LTR MaLR 1 396 0 6 1221 9398 33 2 2 chr9 83406418 83407516 -40668656 + MTA_Mm-int LTR MaLR 1 1098 0 6 1221 3549 20 2 0 chr9 83407516 83407911 -40668261 + MTA_Mm LTR MaLR 1 396 0 6 1221 2619 165 93 9 chr9 83407911 83408020 -40668152 + RMER4B LTR ERVK 445 581 -4 6 1221 375 130 156 0 chr9 83408025 83408102 -40668070 + B1_Mur2 SINE Alu 61 149 0 6 1221 1003 230 128 30 chr9 83408112 83408408 -40667764 - MTEb LTR MaLR -53 326 2 6 1221 268 129 84 21 chr9 83409215 83409310 -40666862 + (TA)n Simple_repeat Simple_repeat 1 101 0 6 1221 282 163 50 20 chr9 83409479 83409579 -40666593 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 6 1221 262 149 0 41 chr9 83409605 83409654 -40666518 - MTD LTR MaLR -17 362 316 6 1221 1271 194 115 224 chr9 83409681 83410298 -40665874 - RMER15 LTR ERVL 0 575 26 6 1221 296 200 0 0 chr9 83410347 83410407 -40665765 - RMER15 LTR ERVL -515 60 1 6 1221 449 267 83 44 chr9 83410407 83410591 -40665581 - MTD LTR MaLR -78 341 150 6 1221 242 284 125 0 chr9 83410606 83410694 -40665478 + MTE2a LTR MaLR 166 264 -115 6 1221 609 280 84 11 chr9 83410697 83410888 -40665284 + MTEb-int LTR MaLR 865 1069 -511 6 1221 1238 125 6 7 chr9 83410888 83411163 -40665009 + ORR1B1 LTR MaLR 1 386 -8 6 1221 1303 283 12 126 chr9 83411153 83411734 -40664438 + MTEb-int LTR MaLR 1055 1569 -11 6 1221 1284 246 8 58 chr9 83411745 83412104 -40664068 + MTEb LTR MaLR 1 341 -38 6 1221 184 311 72 43 chr9 83412271 83412409 -40663763 - L2a LINE L2 -56 3370 3229 6 1221 1158 82 0 0 chr9 83412719 83412866 -40663306 - B1_Mm SINE Alu 0 147 1 6 1221 453 36 0 0 chr9 83413179 83413234 -40662938 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1221 198 0 0 0 chr9 83413746 83413768 -40662404 + (CACCC)n Simple_repeat Simple_repeat 3 24 0 6 1221 242 295 25 13 chr9 83414818 83414897 -40661275 + MLT1H1 LTR MaLR 37 116 -439 6 1221 267 331 100 0 chr9 83414996 83415126 -40661046 + B1F1 SINE Alu 6 148 -1 6 1221 340 200 14 14 chr9 83415126 83415197 -40660975 + ID4 SINE ID 2 72 -11 6 1221 1190 88 0 0 chr9 83415593 83415763 -40660409 - MTB_Mm LTR MaLR -57 350 181 6 1221 5292 70 20 0 chr9 83415781 83416464 -40659708 - L1_Mus1 LINE L1 -1 6566 5870 6 1221 381 22 0 22 chr9 83416464 83416510 -40659662 + L1_Mus1 LINE L1 5816 5860 -707 6 1221 34 65 0 0 chr9 83416514 83416576 -40659596 + AT_rich Low_complexity Low_complexity 1 62 0 6 1221 666 185 24 16 chr9 83416584 83416710 -40659462 + B1_Mur2 SINE Alu 21 147 -2 6 1221 425 302 55 8 chr9 83417251 83417378 -40658794 + RSINE1 SINE B4 12 144 -21 6 1221 2996 32 3 0 chr9 83417498 83417843 -40658329 + ORR1A0 LTR MaLR 1 346 0 6 1221 219 139 0 0 chr9 83418300 83418336 -40657836 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6 1221 33 90 0 0 chr9 83418360 83418449 -40657723 + AT_rich Low_complexity Low_complexity 1 89 0 6 1221 966 194 132 117 chr9 83418792 83419282 -40656890 + ORR1B2 LTR MaLR 1 384 0 6 1221 318 175 170 28 chr9 83419379 83419485 -40656687 + RLTR15 LTR ERVK 1 121 -238 6 1221 394 164 0 0 chr9 83419888 83419961 -40656211 - Lx6 LINE L1 -4 7456 7384 6 1221 230 125 21 0 chr9 83420515 83420563 -40655609 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1221 230 316 0 0 chr9 83420677 83420756 -40655416 - ID4 SINE ID -1 82 4 6 1221 432 291 21 7 chr9 83420772 83420914 -40655258 - B1F1 SINE Alu -5 144 1 6 1221 26 0 0 0 chr9 83422434 83422460 -40653712 + AT_rich Low_complexity Low_complexity 1 26 0 6 1221 762 215 21 58 chr9 83422466 83422654 -40653518 + B3A SINE B2 2 182 -16 6 1221 225 132 0 0 chr9 83422659 83422697 -40653475 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 6 1221 23 33 0 0 chr9 83422697 83422727 -40653445 + AT_rich Low_complexity Low_complexity 1 30 0 6 1221 205 292 15 15 chr9 83423800 83423866 -40652306 + MIRc SINE MIR 85 150 -118 6 1221 317 304 26 35 chr9 83423874 83423990 -40652182 + B4A SINE B4 5 119 -173 7 1221 1625 214 20 8 chr9 83424597 83424950 -40651222 - MTD LTR MaLR 0 419 63 7 1221 3514 175 105 23 chr9 83424954 83425724 -40650448 - RMER1B Other Other -1 1065 293 7 1221 333 118 0 0 chr9 83425762 83425813 -40650359 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1221 1056 48 7 14 chr9 83425813 83425960 -40650212 - B2_Mm2 SINE B2 -49 146 1 7 1221 341 200 78 0 chr9 83425960 83426040 -40650132 - MTD LTR MaLR -334 87 1 7 1221 2621 62 6 0 chr9 83427757 83428079 -40648093 + ORR1A2 LTR MaLR 1 324 -3 7 1221 794 183 0 0 chr9 83428263 83428405 -40647767 - ORR1A2 LTR MaLR -185 142 1 7 1221 969 88 0 0 chr9 83428704 83428841 -40647331 + (TGG)n Simple_repeat Simple_repeat 1 137 0 7 1221 943 272 8 19 chr9 83428878 83429137 -40647035 - B4A SINE B4 -24 268 13 7 1221 573 15 0 0 chr9 83429138 83429204 -40646968 + (CACAC)n Simple_repeat Simple_repeat 2 67 0 7 1221 2334 134 59 0 chr9 83429225 83429597 -40646575 + ORR1B1 LTR MaLR 1 394 0 7 1221 392 286 9 9 chr9 83430221 83430327 -40645845 - RSINE1 SINE B4 -12 153 48 7 1221 2079 164 32 3 chr9 83430321 83430699 -40645473 - RMER19B LTR ERVK -513 389 1 7 1221 1222 171 9 0 chr9 83430786 83431008 -40645164 + URR1B DNA MER1_type 1 224 -1 7 1221 223 323 56 63 chr9 83431212 83431354 -40644818 + MIRb SINE MIR 113 253 -15 7 1221 224 309 183 7 chr9 83431866 83432019 -40644153 - MIRb SINE MIR -65 203 24 7 1221 771 148 231 21 chr9 83432221 83432407 -40643765 + URR1A DNA MER1_type 2 226 0 7 1221 347 274 9 26 chr9 83434612 83434728 -40641444 + MLT1A0 LTR MaLR 1 114 -276 7 1221 417 224 51 30 chr9 83434757 83434914 -40641258 - B4 SINE B4 -85 207 1 7 1221 445 312 14 21 chr9 83435002 83435146 -40641026 + MLT1A0 LTR MaLR 169 311 -54 7 1221 23 33 0 0 chr9 83435172 83435202 -40640970 + AT_rich Low_complexity Low_complexity 1 30 0 7 1221 255 79 0 0 chr9 83435421 83435459 -40640713 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1221 226 300 0 16 chr9 83436264 83436325 -40639847 + B4A SINE B4 82 141 -151 7 1221 383 338 86 13 chr9 83438184 83438418 -40637754 + Charlie4 DNA MER1_type 23 273 -1688 7 1221 730 220 58 99 chr9 83439651 83439884 -40636288 + RMER16 LTR ERVK 1 388 -145 7 1221 198 0 0 0 chr9 83439884 83439906 -40636266 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1221 730 220 73 135 chr9 83439906 83440059 -40636113 + RMER16 LTR ERVK 389 533 0 7 1221 320 221 296 0 chr9 83440554 83440677 -40635495 + RSINE1 SINE B4 2 161 -4 7 1221 240 35 0 0 chr9 83440682 83440711 -40635461 + (CATA)n Simple_repeat Simple_repeat 2 30 0 7 1221 398 208 136 19 chr9 83441363 83441466 -40634706 + PB1D10 SINE Alu 1 115 -2 7 1221 219 269 29 15 chr9 83445380 83445448 -40630724 - MIR3 SINE MIR -52 156 88 7 1221 357 62 0 0 chr9 83445556 83445604 -40630568 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1221 586 258 156 78 chr9 83445619 83445863 -40630309 - B4A SINE B4 -15 277 15 7 1221 222 37 0 0 chr9 83446702 83446729 -40629443 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 1221 835 258 146 33 chr9 83447037 83447346 -40628826 - MLT1C LTR MaLR -115 352 6 7 1221 816 189 67 28 chr9 83447808 83447988 -40628184 + B2_Mm2 SINE B2 2 188 -7 7 1221 456 51 0 0 chr9 83448060 83448119 -40628053 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1221 649 247 114 55 chr9 83448140 83448389 -40627783 - B4A SINE B4 -18 274 14 7 1221 28 0 0 0 chr9 83448397 83448425 -40627747 + AT_rich Low_complexity Low_complexity 1 28 0 7 1221 378 0 0 0 chr9 83448721 83448763 -40627409 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1221 258 202 110 37 chr9 83448811 83448893 -40627279 + Lx8 LINE L1 7385 7472 -1 7 1221 195 271 100 0 chr9 83449368 83449438 -40626734 + L4 LINE RTE 94 170 -1859 7 1221 449 198 0 9 chr9 83449730 83449837 -40626335 + (TA)n Simple_repeat Simple_repeat 2 107 0 7 1221 457 266 166 103 chr9 83451093 83451395 -40624777 + MTD LTR MaLR 85 405 -14 7 1221 462 18 0 0 chr9 83452809 83452864 -40623308 + (TTAGGG)n Simple_repeat Simple_repeat 4 58 0 7 1221 362 343 72 29 chr9 83454300 83454507 -40621665 - MER20 DNA MER1_type -3 216 1 7 1221 348 259 35 44 chr9 83454579 83454692 -40621480 + PB1D9 SINE Alu 3 114 -6 7 1221 1796 279 73 5 chr9 83454894 83455523 -40620649 - L1MB7 LINE L1 -14 6170 5499 7 1221 250 220 0 39 chr9 83455549 83455601 -40620571 - ID_B1 SINE B4 0 224 175 7 1221 237 215 43 58 chr9 83455601 83455618 -40620554 - PB1D9 SINE Alu 0 120 53 7 1221 622 256 37 26 chr9 83455667 83455856 -40620316 + RMER30 DNA MER1_type 11 201 -1 7 1221 221 333 117 11 chr9 83455856 83455948 -40620224 - 7SLRNA srpRNA srpRNA -203 111 10 7 1221 425 222 0 0 chr9 83455877 83455949 -40620223 - ID_B1 SINE B4 -62 162 91 7 1221 284 44 44 0 chr9 83458278 83458323 -40617849 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 7 1221 277 276 13 0 chr9 83458598 83458674 -40617498 + PB1D10 SINE Alu 1 77 -40 7 1221 250 338 0 0 chr9 83460550 83460624 -40615548 - ID4_ SINE ID -8 75 2 7 1221 762 288 8 29 chr9 83460741 83460984 -40615188 - B4A SINE B4 -46 246 9 7 1221 271 284 100 73 chr9 83461462 83461572 -40614600 + PB1D10 SINE Alu 1 113 -4 7 1221 389 219 0 14 chr9 83461753 83461827 -40614345 + ID4 SINE ID 1 73 -10 7 1221 568 286 125 26 chr9 83461988 83462300 -40613872 - L1MA6 LINE L1 -208 6092 5750 7 1221 471 277 90 24 chr9 83462671 83462926 -40613246 - L1MA6 LINE L1 -543 5748 5477 7 1221 260 258 0 31 chr9 83462932 83462996 -40613176 + MTE2a LTR MaLR 123 184 -195 7 1221 361 255 50 85 chr9 83463177 83463341 -40612831 - MLT1H LTR MaLR -390 159 26 7 1221 1977 141 262 14 chr9 83464185 83464609 -40611563 + RLTR24 LTR ERV1 1 529 0 7 1221 255 286 59 79 chr9 83465024 83465176 -40610996 + LTR88c LTR Genie? 6 154 -708 7 1221 25 0 0 0 chr9 83465693 83465718 -40610454 + AT_rich Low_complexity Low_complexity 1 25 0 7 1221 209 287 236 65 chr9 83466245 83466491 -40609681 - L2a LINE L2 -5 3421 3134 7 1221 23 0 0 0 chr9 83466496 83466519 -40609653 + AT_rich Low_complexity Low_complexity 1 23 0 7 1221 471 266 37 0 chr9 83466523 83466632 -40609540 - B1_Mur1 SINE Alu -7 142 30 7 1221 292 208 184 4 chr9 83466845 83466933 -40609239 - B1F SINE Alu -17 100 1 7 1221 209 98 0 24 chr9 83467574 83467616 -40608556 + (CCCCCA)n Simple_repeat Simple_repeat 1 41 0 7 1221 1261 167 270 0 chr9 83468208 83468510 -40607662 + MTC LTR MaLR 1 383 -38 7 1221 312 219 16 0 chr9 83468761 83468825 -40607347 + 4.5SRNA scRNA scRNA 1 65 -29 7 1221 957 297 113 24 chr9 83468889 83469224 -40606948 + MLT1A0 LTR MaLR 1 365 0 7 1221 789 245 167 33 chr9 83469304 83469604 -40606568 - RCHARR1 DNA MER1_type -632 342 3 7 1221 3650 259 164 7 chr9 83472495 83473106 -40603066 - MMAR1 DNA Mariner 0 1286 557 7 1221 434 33 17 0 chr9 83473106 83473166 -40603006 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1221 3650 259 164 7 chr9 83473166 83473666 -40602506 - MMAR1 DNA Mariner -730 556 1 7 1221 418 301 145 38 chr9 83474020 83474310 -40601862 - HAL1 LINE L1 -1242 1265 945 7 1221 319 276 0 31 chr9 83474343 83474440 -40601732 + CT-rich Low_complexity Low_complexity 3 96 0 7 1221 825 132 88 0 chr9 83475201 83475337 -40600835 - B1_Mur3 SINE Alu -1 148 1 7 1221 197 196 0 82 chr9 83476009 83476070 -40600102 - L3 LINE CR1 -99 4390 4335 7 1221 689 287 182 38 chr9 83476671 83477157 -40599015 - L1MA8 LINE L1 -132 6159 5593 7 1221 261 0 0 0 chr9 83477157 83477186 -40598986 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 1221 996 293 148 37 chr9 83477186 83478245 -40597927 - L1MA8 LINE L1 -699 5592 4418 7 1221 288 250 0 0 chr9 83478997 83479069 -40597103 - L1MA8 LINE L1 -1803 4337 4266 7 1221 448 192 0 19 chr9 83479401 83479507 -40596665 - Lx3C LINE L1 -2 6974 6871 7 1221 2096 82 0 14 chr9 83481225 83481509 -40594663 - L1Md_F2 LINE L1 -13 6569 6290 7 1221 481 334 50 105 chr9 83481786 83482204 -40593968 - HAL1 LINE L1 -1143 1364 970 7 1221 414 57 0 0 chr9 83484114 83484167 -40592005 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1221 1373 105 16 0 chr9 83485027 83485218 -40590954 + B2_Mm2 SINE B2 2 195 0 7 1221 1258 41 0 0 chr9 83486990 83487137 -40589035 + B1_Mus2 SINE Alu 1 147 0 7 1221 594 0 0 0 chr9 83487815 83487881 -40588291 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 7 1221 21 0 0 0 chr9 83488647 83488668 -40587504 + AT_rich Low_complexity Low_complexity 1 21 0 7 1221 680 197 28 21 chr9 83488808 83488953 -40587219 - B1_Mur3 SINE Alu 0 149 4 7 1221 411 230 70 17 chr9 83488956 83489071 -40587101 - B1_Mur4 SINE Alu -2 148 28 7 1221 183 100 0 0 chr9 83492555 83492585 -40583587 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 7 1222 310 132 215 38 chr9 83493140 83493219 -40582953 - PB1D10 SINE Alu -1 116 24 7 1222 232 200 26 123 chr9 83494987 83495101 -40581071 - L1_Mur3 LINE L1 -628 5816 5677 7 1222 338 370 62 21 chr9 83495132 83495372 -40580800 - L1_Mur3 LINE L1 -604 5636 5387 7 1222 313 155 151 27 chr9 83495441 83495514 -40580658 - ID4_ SINE ID 0 83 2 7 1222 342 316 97 93 chr9 83496295 83496507 -40579665 + MER33 DNA MER1_type 3 222 -102 7 1222 1196 68 0 0 chr9 83496507 83496655 -40579517 + B1_Mus1 SINE Alu 1 148 0 7 1222 342 316 97 93 chr9 83496655 83496763 -40579409 + MER33 DNA MER1_type 223 324 0 7 1222 207 0 0 0 chr9 83496956 83496979 -40579193 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1222 198 71 0 0 chr9 83497419 83497447 -40578725 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 7 1222 705 106 0 0 chr9 83498576 83498680 -40577492 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1222 695 311 178 43 chr9 83499372 83499789 -40576383 - LTR41B LTR ERVL 0 758 286 7 1222 383 310 166 10 chr9 83499801 83500000 -40576172 - LTR41B LTR ERVL -521 237 8 7 1222 390 226 0 0 chr9 83500317 83500401 -40575771 + PB1D10 SINE Alu 16 99 -18 1 1222 288 243 0 0 chr9 83500568 83500642 -40575530 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1222 450 0 0 0 chr9 83501518 83501568 -40574604 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 1222 410 86 49 0 chr9 83502077 83502158 -40574014 + (TA)n Simple_repeat Simple_repeat 1 85 0 4 1222 231 36 0 0 chr9 83502158 83502185 -40573987 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1222 400 262 145 23 chr9 83502376 83502548 -40573624 + B3A SINE B2 1 193 -5 6 1222 856 207 43 9 chr9 83502743 83503051 -40573121 + MTD LTR MaLR 1 419 0 7 1222 356 243 154 10 chr9 83503360 83503464 -40572708 + PB1 SINE Alu 7 125 -2 8 1222 441 0 0 0 chr9 83503594 83503643 -40572529 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1222 309 260 10 29 chr9 83504525 83504628 -40571544 - MLT1D LTR MaLR -289 216 116 1 1222 180 172 17 33 chr9 83505065 83505125 -40571047 + GA-rich Low_complexity Low_complexity 1 59 0 1 1222 1461 191 143 9 chr9 83505727 83506076 -40570096 + MT2A LTR ERVL 2 397 -136 1 1222 235 119 0 45 chr9 83506106 83506150 -40570022 + MT2A LTR ERVL 492 533 0 1 1222 243 0 0 0 chr9 83507314 83507341 -40568831 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1222 1106 102 0 0 chr9 83508896 83509043 -40567129 + B1_Mus1 SINE Alu 2 148 0 1 1222 27 29 0 0 chr9 83509160 83509194 -40566978 + AT_rich Low_complexity Low_complexity 1 34 0 1 1222 1279 87 43 11 chr9 83509334 83509521 -40566651 - B2_Mm2 SINE B2 -2 193 1 1 1222 338 155 99 0 chr9 83509521 83509592 -40566580 - MLT1B LTR MaLR -210 180 103 1 1222 242 333 0 0 chr9 83509891 83509963 -40566209 - MER58B DNA MER1_type 0 341 270 1 1222 363 345 177 5 chr9 83510696 83511130 -40565042 + Arthur1 DNA Tip100 146 654 -3293 1 1222 1254 67 0 0 chr9 83511204 83511369 -40564803 + (TG)n Simple_repeat Simple_repeat 2 166 0 2 1222 616 308 0 7 chr9 83511381 83511528 -40564644 - RSINE1 SINE B4 -17 148 3 2 1222 357 82 0 0 chr9 83511531 83511580 -40564592 + (TCC)n Simple_repeat Simple_repeat 2 50 0 2 1222 216 77 58 0 chr9 83512070 83512122 -40564050 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 2 1222 1392 173 166 68 chr9 83512122 83512562 -40563610 - RLTR20B3 LTR ERVK -74 503 21 2 1222 891 154 14 14 chr9 83513145 83513290 -40562882 + B1_Mus1 SINE Alu 3 147 -1 2 1222 4233 54 4 0 chr9 83513305 83513806 -40562366 + RLTR1C LTR ERV1 1 503 0 2 1222 235 306 41 14 chr9 83514711 83514784 -40561388 - ID4_ SINE ID -5 78 4 2 1222 513 0 0 0 chr9 83514970 83515027 -40561145 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1222 610 288 7 0 chr9 83515028 83515167 -40561005 - B3A SINE B2 -57 141 2 2 1222 200 191 0 0 chr9 83515172 83515214 -40560958 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 1222 216 0 0 0 chr9 83515219 83515243 -40560929 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1222 5131 60 0 18 chr9 83515387 83516047 -40560125 + L1Md_F2 LINE L1 5923 6570 -12 3 1222 236 182 45 15 chr9 83516437 83516504 -40559668 + GA-rich Low_complexity Low_complexity 1 69 0 3 1222 716 283 135 15 chr9 83516579 83516905 -40559267 - MLT1A0 LTR MaLR 0 365 1 3 1222 394 318 71 5 chr9 83518551 83518747 -40557425 - MER58B DNA MER1_type -1 340 132 1 1222 1475 220 114 54 chr9 83518744 83519262 -40556910 - RLTR40 LTR ERVK -10 807 259 3 1222 260 263 38 50 chr9 83519313 83519393 -40556779 - ID4_ SINE ID -1 82 4 3 1222 266 213 105 13 chr9 83519393 83519469 -40556703 + MER74A LTR ERVL 474 556 -2 3 1222 1129 76 7 0 chr9 83519478 83519623 -40556549 + B1_Mus2 SINE Alu 2 147 0 3 1222 293 271 52 10 chr9 83519740 83519837 -40556335 + Tigger5 DNA MER2_type 1 101 -2305 3 1222 1890 131 51 40 chr9 83519880 83520230 -40555942 + ORR1B2 LTR MaLR 1 354 -13 4 1222 229 275 92 46 chr9 83520402 83520534 -40555638 - MLT1A0 LTR MaLR -31 359 230 4 1222 1813 37 0 5 chr9 83520744 83520963 -40555209 + L1_Mus1 LINE L1 6350 6567 0 4 1222 590 324 39 18 chr9 83521183 83521463 -40554709 + RMER15 LTR ERVL 276 561 -14 4 1222 2301 149 61 3 chr9 83521627 83521805 -40554367 - RMER10B LTR ERVL 0 398 198 4 1222 402 39 0 0 chr9 83521805 83521857 -40554315 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1222 2301 149 61 3 chr9 83521857 83522054 -40554118 - RMER10B LTR ERVL -201 197 2 4 1222 315 0 0 0 chr9 83523698 83523733 -40552439 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1222 1029 213 164 93 chr9 83523895 83524273 -40551899 - MTD LTR MaLR -14 405 1 4 1222 292 223 83 46 chr9 83524281 83524389 -40551783 + ORR1E LTR MaLR 33 144 -215 4 1222 1264 101 5 60 chr9 83524525 83524725 -40551447 + B2_Mm1t SINE B2 1 189 -4 4 1222 763 262 122 20 chr9 83524815 83525068 -40551104 - B4A SINE B4 -13 279 1 5 1222 381 131 0 0 chr9 83526381 83526442 -40549730 + (T)n Simple_repeat Simple_repeat 1 61 0 5 1222 916 77 0 8 chr9 83526442 83526573 -40549599 - B1_Mus1 SINE Alu 0 148 19 5 1222 280 57 36 36 chr9 83526603 83526658 -40549514 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 5 1222 253 194 160 75 chr9 83526676 83526782 -40549390 - PB1D10 SINE Alu -1 116 2 5 1222 378 287 139 15 chr9 83527355 83527614 -40548558 - MLT1A1 LTR MaLR -75 290 2 5 1222 226 290 0 0 chr9 83527670 83527739 -40548433 + L1MD LINE L1 5760 5828 -2167 5 1222 478 315 21 7 chr9 83527818 83527962 -40548210 + MER58A DNA MER1_type 79 224 0 5 1222 245 250 0 0 chr9 83527971 83528023 -40548149 + L1MC2 LINE L1 5896 5947 -397 5 1222 27 0 0 0 chr9 83528023 83528050 -40548122 + AT_rich Low_complexity Low_complexity 1 27 0 5 1222 351 0 0 0 chr9 83528568 83528607 -40547565 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1222 1064 179 4 48 chr9 83528616 83528845 -40547327 + URR1B DNA MER1_type 1 219 -6 6 1222 212 0 0 35 chr9 83529304 83529333 -40546839 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 6 1222 512 228 34 7 chr9 83530123 83530269 -40545903 + HAL1-2a_MD LINE L1 2356 2505 -519 6 1222 414 0 0 0 chr9 83530407 83530453 -40545719 + (CAAAT)n Simple_repeat Simple_repeat 5 50 0 6 1222 1055 281 24 17 chr9 83530499 83530789 -40545383 + B4A SINE B4 1 292 0 6 1222 1482 118 9 9 chr9 83531073 83531296 -40544876 - URR1B DNA MER1_type -2 223 1 6 1222 274 138 49 12 chr9 83533062 83533084 -40543088 + RMER17C LTR ERVK 191 213 -197 6 1222 381 43 0 0 chr9 83533084 83533131 -40543041 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1222 274 138 49 12 chr9 83533131 83533189 -40542983 + RMER17C LTR ERVK 214 274 -136 6 1222 280 286 117 62 chr9 83533207 83533389 -40542783 - MER97b DNA MER1_type? -200 853 658 6 1222 1831 204 105 24 chr9 83533389 83533800 -40542372 + RLTR41 LTR ERV1 1 444 -2 7 1222 280 286 117 62 chr9 83533800 83533941 -40542231 - MER97b DNA MER1_type? -396 657 512 6 1222 1011 147 20 31 chr9 83534619 83534648 -40541524 - RLTR11A2 LTR ERVK -9 518 493 7 1222 1884 190 112 27 chr9 83534648 83535059 -40541113 - RLTR41 LTR ERV1 0 446 1 7 1222 1011 147 20 31 chr9 83535059 83535204 -40540968 - RLTR11A2 LTR ERVK -35 492 346 7 1222 387 159 0 0 chr9 83535204 83535267 -40540905 + RMER10B LTR ERVL 1 63 -335 7 1222 1122 159 220 14 chr9 83535906 83536188 -40539984 + RMER10B LTR ERVL 59 398 0 7 1222 1473 193 3 73 chr9 83536188 83536545 -40539627 - RLTR11A2 LTR ERVK -178 349 18 7 1222 306 0 0 0 chr9 83537304 83537338 -40538834 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1222 542 41 14 0 chr9 83537338 83537411 -40538761 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 1222 472 297 74 28 chr9 83538218 83538537 -40537635 + L1MB5 LINE L1 5547 5871 -313 7 1222 1162 68 0 0 chr9 83538841 83538988 -40537184 - B1_Mus2 SINE Alu 0 147 1 7 1222 584 321 6 18 chr9 83539034 83539202 -40536970 - B4 SINE B4 -125 167 2 7 1222 203 195 49 0 chr9 83539964 83540005 -40536167 + MIR3 SINE MIR 148 190 -18 7 1222 986 169 137 10 chr9 83540044 83540241 -40535931 - URR1A DNA MER1_type -4 222 1 8 1222 545 310 60 40 chr9 83540404 83540653 -40535519 - MER21B LTR ERV1 -144 719 466 8 1222 500 357 13 0 chr9 83540668 83540822 -40535350 + RSINE1 SINE B4 8 163 -2 8 1222 327 49 0 0 chr9 83541068 83541109 -40535063 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 8 1222 419 259 28 9 chr9 83541119 83541228 -40534944 - PB1D10 SINE Alu -6 111 1 8 1222 279 0 0 0 chr9 83542233 83542264 -40533908 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1222 697 141 23 19 chr9 83542752 83542977 -40533195 + (CATATA)n Simple_repeat Simple_repeat 1 226 0 8 1222 1241 248 75 0 chr9 83544061 83544408 -40531764 - ORR1D1 LTR MaLR 0 374 2 8 1222 253 217 16 16 chr9 83544504 83544549 -40531623 + polypyrimidine Low_complexity Low_complexity 19 63 0 8 1222 1236 102 32 11 chr9 83544549 83544737 -40531435 - B2_Mm2 SINE B2 -3 192 1 8 1222 253 217 16 16 chr9 83544737 83544752 -40531420 + polypyrimidine Low_complexity Low_complexity 4 18 0 9 1222 339 291 26 43 chr9 83544767 83544882 -40531290 - PB1D10 SINE Alu -2 115 3 9 1222 33 25 0 0 chr9 83545096 83545136 -40531036 + AT_rich Low_complexity Low_complexity 1 40 0 9 1222 243 0 0 0 chr9 83545175 83545202 -40530970 + (TA)n Simple_repeat Simple_repeat 2 28 0 9 1222 2174 97 35 32 chr9 83545205 83545545 -40530627 - Lx3A LINE L1 -10 6971 6631 9 1222 1205 61 0 0 chr9 83545559 83545707 -40530465 - B1_Mus1 SINE Alu 0 148 1 9 1222 243 61 43 57 chr9 83546272 83546342 -40529830 + T-rich Low_complexity Low_complexity 3 71 0 9 1222 360 221 32 0 chr9 83548627 83548722 -40527450 + Lx4A LINE L1 6961 7058 0 9 1222 239 338 0 0 chr9 83549188 83549265 -40526907 + MER20 DNA MER1_type 71 147 -72 9 1222 429 97 0 0 chr9 83549308 83549380 -40526792 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 1222 2084 67 15 77 chr9 83549473 83549813 -40526359 + ORR1A2 LTR MaLR 1 319 -8 1 1222 5643 8 0 0 chr9 83550047 83550663 -40525509 + L1Md_T LINE L1 5967 6582 0 1 1222 214 265 0 0 chr9 83551164 83551213 -40524959 + A-rich Low_complexity Low_complexity 1 49 0 1 1222 969 94 0 0 chr9 83551571 83551709 -40524463 + (TA)n Simple_repeat Simple_repeat 2 139 0 1 1222 234 0 0 0 chr9 83551784 83551810 -40524362 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 1 1222 752 297 30 38 chr9 83551865 83552131 -40524041 + B4A SINE B4 1 264 -28 1 1222 414 39 0 0 chr9 83552976 83553028 -40523144 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1222 22 56 0 0 chr9 83553564 83553600 -40522572 + GC_rich Low_complexity Low_complexity 1 36 0 1 1222 486 0 0 0 chr9 83553908 83553962 -40522210 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1222 783 249 22 6 chr9 83553985 83554163 -40522009 - B3A SINE B2 -17 181 1 1 1222 814 161 0 32 chr9 83554249 83554403 -40521769 + RMER20B LTR ERVK 479 627 0 1 1222 253 200 55 0 chr9 83554542 83554597 -40521575 - ID4_ SINE ID -2 81 24 1 1222 1723 151 35 32 chr9 83554764 83555099 -40521073 - ORR1B2 LTR MaLR 0 367 32 1 1222 243 114 0 0 chr9 83555099 83555134 -40521038 + ORR1B2 LTR MaLR 1 35 -332 1 1222 673 290 48 63 chr9 83555200 83555469 -40520703 - B4A SINE B4 -25 267 3 1 1222 255 31 0 0 chr9 83555910 83555942 -40520230 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1222 1051 111 93 6 chr9 83556484 83556656 -40519516 - B2_Mm2 SINE B2 -8 187 1 1 1222 525 32 0 0 chr9 83557092 83557155 -40519017 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 1 1222 189 0 0 0 chr9 83557475 83557496 -40518676 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1222 267 104 0 0 chr9 83557960 83558008 -40518164 + (C)n Simple_repeat Simple_repeat 1 48 0 1 1222 23 0 0 0 chr9 83558548 83558571 -40517601 + AT_rich Low_complexity Low_complexity 1 23 0 1 1222 840 137 0 21 chr9 83559474 83559616 -40516556 - B1_Mus2 SINE Alu 0 147 9 1 1222 321 89 0 0 chr9 83559619 83559664 -40516508 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 1 1222 594 324 20 40 chr9 83560209 83560443 -40515729 + B4A SINE B4 3 234 -58 1 1222 3148 146 199 85 chr9 83560443 83561253 -40514919 + RMER19B LTR ERVK 1 902 0 1 1222 594 324 20 40 chr9 83561253 83561314 -40514858 + B4A SINE B4 235 292 0 1 1222 426 20 0 0 chr9 83561351 83561402 -40514770 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1222 942 287 258 21 chr9 83561872 83562507 -40513665 - L1MC4 LINE L1 -1 8041 7265 1 1222 230 106 0 21 chr9 83562537 83562585 -40513587 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1 1222 423 0 0 0 chr9 83562655 83562702 -40513470 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1222 546 237 158 0 chr9 83562724 83562863 -40513309 - B3A SINE B2 -36 162 2 1 1222 262 323 92 36 chr9 83562938 83563134 -40513038 - L1MC4 LINE L1 -989 6893 6687 1 1222 3074 159 42 9 chr9 83563203 83563755 -40512417 + RMER15 LTR ERVL 1 570 -5 1 1222 421 322 23 32 chr9 83563755 83563973 -40512199 - L1MC4 LINE L1 -1220 6662 6447 1 1222 4158 49 19 23 chr9 83564392 83564913 -40511259 + MURVY-LTR LTR ERV1 1 519 0 1 1222 210 71 0 0 chr9 83565493 83565521 -40510651 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1222 432 0 0 0 chr9 83565935 83565983 -40510189 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1222 319 291 90 69 chr9 83565995 83566139 -40510033 + B1F SINE Alu 3 149 0 1 1222 240 319 28 0 chr9 83566184 83566256 -40509916 + PB1 SINE Alu 1 74 -53 1 1222 1796 329 112 83 chr9 83566955 83568349 -40507823 + MTE-int LTR MaLR 116 1549 -31 1 1222 285 233 221 49 chr9 83569952 83570074 -40506098 - MER5A DNA MER1_type 0 189 47 1 1222 201 139 0 0 chr9 83570331 83570374 -40505798 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1222 939 120 14 14 chr9 83572235 83572379 -40503793 - B1_Mus2 SINE Alu 0 147 4 1 1222 1135 135 27 5 chr9 83572891 83573077 -40503095 - B2_Mm2 SINE B2 -2 193 4 1 1222 369 0 0 0 chr9 83573557 83573598 -40502574 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1222 180 0 0 0 chr9 83574447 83574467 -40501705 + (GCCTG)n Simple_repeat Simple_repeat 4 23 0 1 1222 636 263 59 0 chr9 83574816 83574968 -40501204 + B3 SINE B2 1 161 -55 1 1222 2232 81 6 42 chr9 83575185 83575519 -40500653 - RLTRETN_Mm LTR ERVK 0 322 1 1 1222 427 298 53 80 chr9 83576696 83576995 -40499177 + B4A SINE B4 1 291 -1 1 1222 410 236 119 4 chr9 83578552 83578638 -40497534 - MLT1E3 LTR MaLR -365 315 157 1 1222 180 0 0 0 chr9 83578638 83578658 -40497514 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 1222 410 207 65 2 chr9 83578658 83578738 -40497434 - MLT1E3 LTR MaLR -474 206 102 1 1222 28 0 0 0 chr9 83579097 83579125 -40497047 + AT_rich Low_complexity Low_complexity 1 28 0 1 1222 28 0 0 0 chr9 83579614 83579642 -40496530 + AT_rich Low_complexity Low_complexity 1 28 0 1 1222 848 155 84 134 chr9 83580690 83580928 -40495244 - URR1A DNA MER1_type 0 226 1 1 1222 583 241 2 50 chr9 83581678 83582333 -40493839 + (CTAGGG)n Simple_repeat Simple_repeat 1 623 0 1 1222 659 224 126 0 chr9 83582362 83582536 -40493636 + B3A SINE B2 2 197 -1 1 1222 543 143 22 33 chr9 83582868 83583049 -40493123 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1222 437 137 40 35 chr9 83583083 83583257 -40492915 + (TG)n Simple_repeat Simple_repeat 1 175 0 1 1222 231 78 39 19 chr9 83583315 83583367 -40492805 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1222 21 0 0 0 chr9 83583846 83583867 -40492305 + AT_rich Low_complexity Low_complexity 1 21 0 1 1222 534 70 0 0 chr9 83585430 83585501 -40490671 + (TTTG)n Simple_repeat Simple_repeat 4 74 0 1 1222 217 324 14 0 chr9 83586241 83586312 -40489860 + ID4 SINE ID 12 83 0 1 1222 579 152 134 13 chr9 83586681 83586846 -40489326 + B3 SINE B2 5 179 -16 1 1222 560 238 109 0 chr9 83587214 83587361 -40488811 + B3A SINE B2 1 163 -35 1 1222 335 231 9 0 chr9 83587467 83587547 -40488625 + B3 SINE B2 21 104 -94 1 1222 249 33 0 0 chr9 83587645 83587675 -40488497 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1 1222 21 57 0 0 chr9 83587841 83587876 -40488296 + AT_rich Low_complexity Low_complexity 1 35 0 1 1222 279 0 0 0 chr9 83587931 83587962 -40488210 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1222 588 189 32 95 chr9 83587966 83588087 -40488085 - B1_Mus1 SINE Alu 0 148 34 1 1222 1261 34 0 0 chr9 83588087 83588233 -40487939 + B1_Mus2 SINE Alu 1 146 -1 1 1222 414 0 0 0 chr9 83588233 83588279 -40487893 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1 1222 588 189 32 95 chr9 83588279 83588314 -40487858 - B1_Mus1 SINE Alu -115 33 2 1 1222 274 196 41 0 chr9 83588839 83588936 -40487236 - Lx9 LINE L1 -15 7629 7529 1 1222 273 331 36 7 chr9 83588914 83589051 -40487121 - Lx9 LINE L1 -256 7388 7248 1 1222 697 211 6 42 chr9 83589096 83589264 -40486908 - RSINE1 SINE B4 0 165 4 1 1222 258 32 0 0 chr9 83589387 83589418 -40486754 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1222 662 256 6 49 chr9 83589596 83589758 -40486414 - B3A SINE B2 -5 211 60 1 1222 2321 137 12 55 chr9 83589758 83590174 -40485998 - RMER10B LTR ERVL 0 398 1 1 1222 662 250 6 47 chr9 83590174 83590218 -40485954 - B3A SINE B2 -139 59 16 1 1222 778 248 26 71 chr9 83590648 83590874 -40485298 + B3 SINE B2 1 216 0 1 1222 276 362 72 18 chr9 83591738 83591904 -40484268 - Arthur1 DNA Tip100 -3034 913 739 1 1222 336 275 207 21 chr9 83591951 83592144 -40484028 + B4A SINE B4 2 230 -62 1 1222 268 305 56 19 chr9 83592401 83592508 -40483664 - MIR SINE MIR -87 175 65 1 1222 26 30 0 0 chr9 83594034 83594067 -40482105 + AT_rich Low_complexity Low_complexity 1 33 0 1 1222 290 281 22 0 chr9 83595503 83595592 -40480580 + MER63D DNA AcHobo 191 281 -780 1 1222 289 337 11 0 chr9 83595767 83595862 -40480310 + PB1D10 SINE Alu 12 107 -10 1 1222 558 0 0 0 chr9 83595879 83595941 -40480231 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1222 369 0 0 0 chr9 83596181 83596222 -40479950 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1222 383 56 19 0 chr9 83597402 83597456 -40478716 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1222 1465 162 98 60 chr9 83597651 83597858 -40478314 - ORR1C2 LTR MaLR -3 381 176 1 1222 383 0 21 0 chr9 83597858 83597905 -40478267 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1222 1465 162 98 60 chr9 83597905 83598064 -40478108 - ORR1C2 LTR MaLR -209 175 1 1 1222 297 222 32 0 chr9 83598517 83598580 -40477592 + PB1D10 SINE Alu 37 101 -16 1 1222 995 60 0 47 chr9 83598676 83598829 -40477343 - Lx3A LINE L1 -1035 5962 5820 1 1222 22 56 0 0 chr9 83599360 83599396 -40476776 + AT_rich Low_complexity Low_complexity 1 36 0 1 1222 292 324 27 36 chr9 83600140 83600252 -40475920 - MLT1I LTR MaLR -166 245 135 1 1222 1124 141 116 0 chr9 83600495 83600694 -40475478 - URR1B DNA MER1_type -3 222 1 1 1222 2977 116 32 18 chr9 83601178 83601618 -40474554 + RLTR41 LTR ERV1 1 446 0 1 1222 273 241 167 11 chr9 83602435 83602573 -40473599 + B3 SINE B2 2 169 -47 1 1222 324 0 0 0 chr9 83602577 83602613 -40473559 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1222 34 65 0 0 chr9 83602676 83602738 -40473434 + AT_rich Low_complexity Low_complexity 1 62 0 1 1222 287 228 181 14 chr9 83602764 83602902 -40473270 - L1MA6 LINE L1 0 6300 6140 1 1222 1141 270 60 77 chr9 83602919 83603501 -40472671 + L1MA5 LINE L1 5460 6031 -269 1 1222 1226 183 39 39 chr9 83603506 83603790 -40472382 + ORR1B1 LTR MaLR 1 284 -110 1 1222 4541 131 13 56 chr9 83603790 83604576 -40471596 + ETnERV3-int LTR ERVK 5029 5780 -28 1 1222 7719 39 3 1 chr9 83604586 83605477 -40470695 + RLTR13B1 LTR ERVK 1 893 0 1 1222 784 82 25 0 chr9 83605477 83605599 -40470573 + ORR1B1 LTR MaLR 243 367 0 1 1222 390 329 81 21 chr9 83605609 83605845 -40470327 + L1MA5 LINE L1 6042 6291 -9 1 1222 267 296 19 58 chr9 83605889 83606043 -40470129 + Charlie26a DNA MER1_type 162 309 -16 1 1222 3697 72 8 2 chr9 83607761 83608274 -40467898 + MusHAL1 LINE L1 1570 2085 -627 1 1222 282 170 0 0 chr9 83608562 83608609 -40467563 + ORR1C1 LTR MaLR 324 370 -8 1 1222 304 122 20 0 chr9 83608616 83608665 -40467507 + MERVL_2A-int LTR ERVL 5641 5690 -71 1 1222 776 155 7 7 chr9 83608663 83608806 -40467366 + MERVL_2A-int LTR ERVL 5619 5761 0 1 1222 281 177 211 4 chr9 83608806 83608919 -40467253 + MT2B LTR ERVL 1 132 -401 1 1222 1045 202 35 78 chr9 83608947 83609276 -40466896 + MT2B LTR ERVL 253 525 -76 1 1222 238 204 18 27 chr9 83609276 83609387 -40466785 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 2 1222 3052 46 0 0 chr9 83609392 83609781 -40466391 + MTB LTR MaLR 10 398 -2 2 1222 426 39 0 0 chr9 83610103 83610155 -40466017 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1222 595 212 90 15 chr9 83610158 83610292 -40465880 - B1_Mur1 SINE Alu -1 148 5 2 1222 219 69 0 0 chr9 83610929 83610958 -40465214 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1222 212 237 263 0 chr9 83611388 83611464 -40464708 + RSINE1 SINE B4 36 131 -34 2 1222 1883 93 14 96 chr9 83611545 83611901 -40464271 - ORR1A2 LTR MaLR 0 327 1 2 1222 232 353 93 16 chr9 83613977 83614170 -40462002 + LTR75 LTR ERVL 162 369 -193 2 1222 225 368 43 36 chr9 83614492 83614630 -40461542 - MLT1L LTR MaLR -240 370 232 2 1222 284 313 150 58 chr9 83615761 83615863 -40460309 + L1MC LINE L1 5276 5368 -2514 2 1222 546 57 0 0 chr9 83615863 83615933 -40460239 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1222 284 313 150 58 chr9 83615933 83616230 -40459942 + L1MC LINE L1 5369 5712 -2170 2 1222 1280 239 151 70 chr9 83617091 83617788 -40458384 + L1MA6 LINE L1 4309 5061 -1082 2 1222 214 108 27 0 chr9 83617955 83617992 -40458180 + RSINE1 SINE B4 1 38 -127 2 1222 248 0 31 0 chr9 83618118 83618150 -40458022 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1222 297 246 232 11 chr9 83618165 83618346 -40457826 + L1MA6 LINE L1 5149 5369 -774 2 1222 473 308 64 71 chr9 83618349 83618772 -40457400 + L1MA6 LINE L1 5881 6300 0 2 1222 212 54 54 0 chr9 83619540 83619577 -40456595 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1222 270 58 18 55 chr9 83619687 83619742 -40456430 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 2 1222 687 236 47 42 chr9 83620371 83620583 -40455589 - B3 SINE B2 -3 213 1 2 1222 490 186 224 24 chr9 83621536 83621701 -40454471 + B3A SINE B2 1 198 0 2 1222 222 333 0 0 chr9 83621933 83622005 -40454167 + BC1_Mm scRNA scRNA 21 92 -60 2 1222 241 319 99 16 chr9 83623002 83623123 -40453049 - MIRb SINE MIR -96 172 42 2 1222 200 86 0 28 chr9 83623837 83623873 -40452299 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1223 463 252 128 34 chr9 83625146 83625294 -40450878 + RSINE1 SINE B4 2 163 -2 2 1223 464 313 99 86 chr9 83626160 83626534 -40449638 - MTEa LTR MaLR 0 379 1 2 1223 1739 16 0 0 chr9 83626724 83626916 -40449256 + B2_Mm1a SINE B2 2 193 0 2 1223 269 319 41 100 chr9 83628298 83628737 -40447435 - L1MC5 LINE L1 -30 7931 7519 2 1223 655 250 29 86 chr9 83629203 83629413 -40446759 + B3A SINE B2 1 198 0 2 1223 200 128 0 25 chr9 83629459 83629499 -40446673 + A-rich Low_complexity Low_complexity 4 42 0 2 1223 450 0 0 0 chr9 83629661 83629711 -40446461 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 1223 283 295 19 13 chr9 83630040 83630154 -40446018 - ID4_ SINE ID -38 114 2 2 1223 1039 324 82 15 chr9 83630368 83631008 -40445164 - L1MB2 LINE L1 -214 5957 5255 2 1223 445 301 53 132 chr9 83631213 83631239 -40444933 - L1MB2 LINE L1 -2476 3664 3648 2 1223 182 91 0 29 chr9 83631239 83631273 -40444899 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 1223 445 291 111 95 chr9 83631273 83631735 -40444437 - L1MB2 LINE L1 -2493 3650 3210 2 1223 465 19 0 0 chr9 83631735 83631789 -40444383 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1223 430 291 111 95 chr9 83631789 83631897 -40444275 - L1MB2 LINE L1 -2934 3209 3075 2 1223 37523 61 10 5 chr9 83631900 83638190 -40437982 - L1Md_F3 LINE L1 0 6584 258 2 1223 1047 299 56 58 chr9 83638207 83638239 -40437933 - L1MB2 LINE L1 -3057 3086 3047 2 1223 4618 68 19 0 chr9 83638239 83638831 -40437341 + L1_Mus1 LINE L1 5965 6567 0 2 1223 1047 299 56 58 chr9 83638831 83639333 -40436839 - L1MB2 LINE L1 -3097 3046 2553 2 1223 416 301 37 15 chr9 83640620 83640738 -40435434 + B4A SINE B4 107 226 -66 2 1223 429 20 0 0 chr9 83640738 83640788 -40435384 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1223 416 301 37 15 chr9 83640788 83640804 -40435368 + B4A SINE B4 227 244 -48 2 1223 1065 177 26 57 chr9 83641450 83641678 -40434494 - URR1A DNA MER1_type 0 226 6 2 1223 440 227 8 0 chr9 83641989 83642108 -40434064 + (TA)n Simple_repeat Simple_repeat 2 121 0 2 1223 817 281 49 58 chr9 83642297 83642626 -40433546 - MER2 DNA MER2_type -19 326 1 2 1223 615 14 0 0 chr9 83642640 83642712 -40433460 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1223 919 158 42 47 chr9 83643121 83643314 -40432858 + URR1A DNA MER1_type 35 226 0 2 1223 5040 131 58 6 chr9 83646005 83646988 -40429184 - Lx2B LINE L1 -530 6470 5454 2 1223 2493 193 48 12 chr9 83646983 83647480 -40428692 + Lx2B LINE L1 6481 6995 -5 2 1223 21 71 0 0 chr9 83647764 83647806 -40428366 + AT_rich Low_complexity Low_complexity 1 42 0 2 1223 211 320 50 19 chr9 83647886 83648056 -40428116 + L2a LINE L2 3210 3426 0 2 1223 242 303 0 15 chr9 83648884 83648951 -40427221 + ID4_ SINE ID 5 70 -13 2 1223 544 288 46 61 chr9 83649024 83649220 -40426952 + B4A SINE B4 96 288 -4 2 1223 261 0 0 0 chr9 83649244 83649273 -40426899 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1223 420 220 9 9 chr9 83651096 83651206 -40424966 + L1MC2 LINE L1 5196 5305 -841 2 1223 1513 51 0 0 chr9 83651214 83651392 -40424780 + B2_Mm2 SINE B2 3 180 -15 2 1223 784 256 71 50 chr9 83651516 83651898 -40424274 + L1MC2 LINE L1 5339 5728 -605 2 1223 7615 38 3 3 chr9 83651902 83652819 -40423353 + L1Md_F3 LINE L1 4670 5586 -297 2 1223 8224 34 11 0 chr9 83652819 83653792 -40422380 + L1Md_F3 LINE L1 5587 6570 -14 2 1223 227 243 40 0 chr9 83653798 83653872 -40422300 + L1MC2 LINE L1 5778 5854 -490 2 1223 285 146 0 0 chr9 83653878 83653926 -40422246 + (CACG)n Simple_repeat Simple_repeat 2 49 0 2 1223 288 223 65 46 chr9 83653949 83654057 -40422115 + L1MC2 LINE L1 5891 6000 -344 2 1223 264 262 23 35 chr9 83654183 83654270 -40421902 + L1MC2 LINE L1 6243 6328 -5 2 1223 21 0 0 0 chr9 83654275 83654296 -40421876 + AT_rich Low_complexity Low_complexity 1 21 0 2 1223 468 99 65 65 chr9 83654390 83654498 -40421674 - B1_Mus2 SINE Alu 0 147 40 2 1223 612 204 0 0 chr9 83654509 83654685 -40421487 + CT-rich Low_complexity Low_complexity 2 177 0 2 1223 328 146 0 0 chr9 83654699 83654754 -40421418 - B1_Mur4 SINE Alu -95 55 1 2 1223 258 184 25 26 chr9 83654754 83654769 -40421403 - B4 SINE B4 -79 121 73 2 1223 270 276 145 0 chr9 83654888 83654964 -40421208 - PB1 SINE Alu -9 118 32 2 1223 198 71 0 0 chr9 83655454 83655482 -40420690 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1223 271 275 94 0 chr9 83656111 83656216 -40419956 - MIR SINE MIR -108 154 38 2 1223 207 0 0 0 chr9 83656451 83656474 -40419698 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1223 441 0 0 0 chr9 83656588 83656637 -40419535 + (TTTTA)n Simple_repeat Simple_repeat 3 51 0 2 1223 514 324 0 7 chr9 83656693 83656839 -40419333 - RSINE1 SINE B4 -20 145 1 2 1223 216 0 0 0 chr9 83656855 83656879 -40419293 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1223 2788 135 9 17 chr9 83656887 83657347 -40418825 - Lx LINE L1 -16 6638 6183 2 1223 988 197 84 9 chr9 83657494 83657754 -40418418 + ORR1D2 LTR MaLR 1 283 -76 2 1223 288 0 0 0 chr9 83657871 83657903 -40418269 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1223 1144 56 28 0 chr9 83657996 83658139 -40418033 + B1_Mus2 SINE Alu 1 147 0 2 1223 354 308 48 27 chr9 83658180 83658367 -40417805 + B4A SINE B4 8 198 -94 2 1223 308 239 20 80 chr9 83658525 83658625 -40417547 + PB1D7 SINE Alu 18 111 -9 2 1223 528 122 0 0 chr9 83658644 83658726 -40417446 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 2 1223 400 229 139 0 chr9 83658726 83658848 -40417324 + B1_Mur2 SINE Alu 6 144 -5 2 1223 316 234 31 0 chr9 83658903 83658967 -40417205 + ID4_ SINE ID 5 70 -13 2 1223 292 52 0 108 chr9 83658967 83659032 -40417140 + A-rich Low_complexity Low_complexity 3 60 0 2 1223 417 236 36 18 chr9 83659041 83659153 -40417019 + PB1D7 SINE Alu 7 120 0 2 1223 1165 68 7 0 chr9 83659263 83659409 -40416763 + B1_Mus1 SINE Alu 1 147 -1 2 1223 186 71 0 0 chr9 83659410 83659438 -40416734 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1223 612 0 0 0 chr9 83659471 83659539 -40416633 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1223 261 0 0 0 chr9 83659539 83659567 -40416605 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1223 454 234 19 0 chr9 83659605 83659712 -40416460 + RSINE1 SINE B4 2 110 -55 2 1223 4194 71 51 9 chr9 83659717 83660283 -40415889 + L1Md_F2 LINE L1 5991 6580 -2 2 1223 466 211 33 125 chr9 83660323 83660507 -40415665 + Lx9 LINE L1 7478 7644 0 2 1223 366 183 0 0 chr9 83660516 83660587 -40415585 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 1223 772 283 40 0 chr9 83660595 83660793 -40415379 + B4A SINE B4 1 206 -86 2 1223 653 275 88 44 chr9 83660805 83661079 -40415093 + B4A SINE B4 1 286 -6 2 1223 321 89 0 0 chr9 83661181 83661226 -40414946 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1223 246 329 0 14 chr9 83661313 83661387 -40414785 - RLTR20A2 LTR ERVK 0 578 506 2 1223 1491 73 16 0 chr9 83661712 83661903 -40414269 + B2_Mm2 SINE B2 2 195 0 2 1223 2651 140 2 16 chr9 83661910 83662353 -40413819 - RLTR20A2 LTR ERVK -81 497 61 2 1223 768 204 0 0 chr9 83662386 83662533 -40413639 - B1_Mus1 SINE Alu 0 148 2 2 1223 357 316 82 36 chr9 83663125 83663319 -40412853 + Charlie12 DNA MER1_type 1 203 -2670 2 1223 230 333 70 56 chr9 83663316 83663529 -40412643 + Charlie12 DNA MER1_type 411 626 -2247 2 1223 1326 243 74 135 chr9 83663625 83663684 -40412488 + Charlie12 DNA MER1_type 625 676 -2197 2 1223 357 240 162 38 chr9 83663684 83663844 -40412328 + B3A SINE B2 1 180 -18 2 1223 1326 243 74 135 chr9 83663844 83664516 -40411656 + Charlie12 DNA MER1_type 677 1311 -1562 2 1223 590 269 6 19 chr9 83664567 83664726 -40411446 - B4 SINE B4 -3 289 133 2 1223 2316 253 30 26 chr9 83664881 83665624 -40410548 + Charlie12 DNA MER1_type 1389 2134 -739 2 1223 774 256 6 6 chr9 83665624 83665801 -40410371 + RMER1C Other Other 716 892 -450 2 1223 248 248 98 114 chr9 83666144 83666267 -40409905 - MLT1A0 LTR MaLR -229 136 16 2 1223 362 337 24 24 chr9 83666480 83666650 -40409522 - ERVL-E-int LTR ERVL -2198 3563 3394 2 1223 263 366 67 36 chr9 83666749 83667194 -40408978 - ERVL-E-int LTR ERVL -2493 3268 2810 2 1223 386 154 0 13 chr9 83667982 83668061 -40408111 + GA-rich Low_complexity Low_complexity 4 81 0 2 1223 523 301 151 33 chr9 83668077 83668441 -40407731 - ERVL-E-int LTR ERVL -3960 1707 1301 2 1223 388 366 65 21 chr9 83668959 83669389 -40406783 - ERVL-E-int LTR ERVL -5018 649 201 2 1223 349 231 13 0 chr9 83670364 83670442 -40405730 + ID4 SINE ID 5 83 0 2 1223 303 93 0 0 chr9 83670831 83670874 -40405298 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 2 1223 477 90 0 0 chr9 83671633 83671700 -40404472 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1223 276 30 0 0 chr9 83671996 83672029 -40404143 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2 1223 457 189 0 21 chr9 83672069 83672166 -40404006 + PB1D10 SINE Alu 22 116 -1 2 1223 213 140 39 20 chr9 83673058 83673109 -40403063 + A-rich Low_complexity Low_complexity 4 55 0 3 1223 22 56 0 0 chr9 83673129 83673165 -40403007 + AT_rich Low_complexity Low_complexity 1 36 0 3 1223 237 228 0 0 chr9 83673517 83673574 -40402598 + (CAT)n Simple_repeat Simple_repeat 3 59 0 3 1223 3465 42 0 2 chr9 83677139 83677547 -40398625 - L1_Mus1 LINE L1 0 6567 6161 3 1223 420 20 0 0 chr9 83677612 83677661 -40398511 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1223 414 0 0 0 chr9 83680217 83680263 -40395909 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 3 1223 183 80 0 0 chr9 83680923 83680948 -40395224 + (CATA)n Simple_repeat Simple_repeat 3 27 0 3 1223 21 0 0 0 chr9 83681147 83681168 -40395004 + AT_rich Low_complexity Low_complexity 1 21 0 3 1223 22 0 0 0 chr9 83681211 83681233 -40394939 + AT_rich Low_complexity Low_complexity 1 22 0 3 1223 608 261 8 0 chr9 83681299 83681433 -40394739 - B1_Mur1 SINE Alu -13 136 2 3 1223 333 0 0 0 chr9 83681468 83681505 -40394667 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1223 783 159 0 0 chr9 83681507 83681639 -40394533 - B1_Mus1 SINE Alu -7 141 10 3 1223 211 357 0 0 chr9 83682111 83682167 -40394005 - ID2 SINE ID 0 83 28 3 1223 1668 212 11 19 chr9 83682505 83682865 -40393307 + MTD LTR MaLR 1 357 -62 3 1223 1256 41 0 7 chr9 83684517 83684666 -40391506 - B1_Mus1 SINE Alu 0 148 1 3 1223 222 261 0 30 chr9 83685135 83685202 -40390970 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 3 1223 1174 68 0 0 chr9 83685316 83685462 -40390710 + B1_Mm SINE Alu 1 146 -1 3 1223 1966 181 148 7 chr9 83685602 83685713 -40390459 + Lx9 LINE L1 6960 7095 -549 3 1223 453 19 0 0 chr9 83685713 83685767 -40390405 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1223 1966 181 148 7 chr9 83685767 83686061 -40390111 + Lx9 LINE L1 7096 7422 -222 3 1223 444 19 0 0 chr9 83686074 83686127 -40390045 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1223 252 198 43 32 chr9 83686170 83686264 -40389908 + Lx9 LINE L1 7544 7638 -6 3 1223 914 252 97 8 chr9 83686927 83687195 -40388977 + B4 SINE B4 1 292 0 3 1223 263 297 15 92 chr9 83687305 83687435 -40388737 - PB1 SINE Alu -7 120 1 3 1223 592 254 0 0 chr9 83688208 83688350 -40387822 - B1_Mur1 SINE Alu -6 143 2 3 1223 378 0 0 0 chr9 83688448 83688490 -40387682 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1223 625 248 0 39 chr9 83689574 83689729 -40386443 - RSINE1 SINE B4 -9 156 8 3 1223 273 273 112 11 chr9 83690180 83690269 -40385903 + PB1 SINE Alu 12 109 -18 3 1223 269 264 87 47 chr9 83690411 83690538 -40385634 + MER5A1 DNA MER1_type 1 132 -34 3 1223 838 164 91 91 chr9 83690703 83690944 -40385228 + Lx5 LINE L1 6796 7036 -14 3 1223 219 103 0 0 chr9 83690944 83690983 -40385189 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 3 1223 270 0 0 0 chr9 83692273 83692303 -40383869 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1223 665 306 93 26 chr9 83692329 83692748 -40383424 - L1MB2 LINE L1 -29 6142 5696 3 1223 207 0 0 0 chr9 83692775 83692798 -40383374 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1223 367 255 31 0 chr9 83693414 83693490 -40382682 + B3A SINE B2 1 79 -119 3 1223 1589 130 4 15 chr9 83693490 83693764 -40382408 + ORR1A4 LTR MaLR 1 271 -58 3 1223 281 250 14 14 chr9 83693790 83693863 -40382309 + B3 SINE B2 76 148 -68 3 1223 396 0 0 0 chr9 83693873 83693917 -40382255 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1223 1197 41 14 0 chr9 83693946 83694091 -40382081 + B1_Mus1 SINE Alu 2 148 0 3 1223 580 157 0 0 chr9 83694591 83694680 -40381492 + B1_Mur3 SINE Alu 1 89 -60 3 1223 223 67 43 22 chr9 83695012 83695058 -40381114 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 3 1223 270 250 46 35 chr9 83695073 83695160 -40381012 + ID_B1 SINE B4 23 110 -114 3 1223 366 268 34 51 chr9 83695219 83695337 -40380835 + PB1D10 SINE Alu 2 117 0 3 1223 216 0 0 0 chr9 83695746 83695770 -40380402 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1223 306 0 0 0 chr9 83696981 83697015 -40379157 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1223 180 0 0 0 chr9 83697543 83697563 -40378609 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1223 216 0 0 0 chr9 83697957 83697981 -40378191 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1223 25 65 0 0 chr9 83699906 83699952 -40376220 + GC_rich Low_complexity Low_complexity 1 46 0 3 1223 359 258 62 39 chr9 83701642 83701771 -40374401 + MLT1A1 LTR MaLR 3 134 -274 3 1223 612 137 0 0 chr9 83701786 83701881 -40374291 - B1_Mus1 SINE Alu -52 96 2 3 1223 310 250 0 83 chr9 83701798 83701894 -40374278 - MT2B LTR ERVL -361 240 153 3 1223 321 267 148 0 chr9 83701963 83702064 -40374108 + MLT1A1 LTR MaLR 255 370 -38 3 1223 333 256 202 22 chr9 83702072 83702300 -40373872 + MLT-int LTR MaLR 53 321 -1414 3 1223 209 33 33 0 chr9 83703055 83703085 -40373087 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 3 1223 465 19 0 0 chr9 83703642 83703696 -40372476 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 3 1223 757 164 41 41 chr9 83703715 83703861 -40372311 - B1_Mus1 SINE Alu -1 147 2 3 1223 2094 305 69 40 chr9 83704050 83704961 -40371211 + Lx7 LINE L1 6377 7314 -382 3 1223 267 220 190 0 chr9 83705006 83705106 -40371066 + Lx8 LINE L1 7353 7471 -2 3 1223 459 340 79 0 chr9 83705128 83705393 -40370779 + L1MC3 LINE L1 6312 6597 -1188 3 1223 316 232 0 68 chr9 83705407 83705495 -40370677 + ID4_ SINE ID 1 82 -1 3 1223 374 225 105 35 chr9 83705509 83705652 -40370520 + L1MC3 LINE L1 7072 7224 -561 3 1223 263 164 213 0 chr9 83705727 83705788 -40370384 + L1MC3 LINE L1 7331 7404 -381 3 1223 423 289 37 37 chr9 83705826 83705988 -40370184 - MTC-int LTR MaLR -412 846 685 3 1223 647 240 141 52 chr9 83705997 83706327 -40369845 + MTD-int LTR MaLR 938 1334 -36 3 1223 1931 205 8 13 chr9 83706332 83706727 -40369445 + MTD LTR MaLR 26 418 -1 3 1223 412 257 172 40 chr9 83706889 83707063 -40369109 - B3A SINE B2 -1 197 1 3 1223 858 264 77 105 chr9 83707929 83708319 -40367853 - MTE2a LTR MaLR 0 379 1 3 1223 230 261 0 14 chr9 83708369 83708439 -40367733 + Lx8 LINE L1 7403 7471 -2 3 1223 234 91 0 0 chr9 83708849 83708882 -40367290 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1223 483 145 0 0 chr9 83710548 83710631 -40365541 + (GGGA)n Simple_repeat Simple_repeat 4 86 0 3 1223 282 193 0 0 chr9 83710633 83710690 -40365482 + A-rich Low_complexity Low_complexity 92 148 0 3 1223 22 70 0 0 chr9 83712093 83712136 -40364036 + AT_rich Low_complexity Low_complexity 1 43 0 3 1223 21 0 0 0 chr9 83712691 83712712 -40363460 + GC_rich Low_complexity Low_complexity 1 21 0 3 1223 186 103 0 0 chr9 83712830 83712859 -40363313 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 3 1223 284 299 29 140 chr9 83713060 83713196 -40362976 + Zaphod DNA Tip100 446 566 -3465 3 1223 239 239 105 23 chr9 83713301 83713434 -40362738 + MER33 DNA MER1_type 91 234 -90 3 1223 1210 48 0 0 chr9 83713690 83713837 -40362335 + B1_Mus2 SINE Alu 1 147 0 3 1223 381 248 67 17 chr9 83713966 83713977 -40362195 - B1F1 SINE Alu -1 148 139 3 1223 207 0 0 0 chr9 83713977 83714000 -40362172 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1223 381 254 64 29 chr9 83714000 83714137 -40362035 - B1F1 SINE Alu -11 138 3 3 1223 266 284 57 38 chr9 83714263 83714472 -40361700 + Zaphod DNA Tip100 3766 3978 -53 3 1223 763 180 8 0 chr9 83715708 83715836 -40360336 - B1_Mus1 SINE Alu -18 130 2 3 1223 1047 147 90 38 chr9 83717128 83717340 -40358832 + URR1B DNA MER1_type 3 225 0 3 1223 380 318 49 37 chr9 83717416 83717661 -40358511 - MER57D LTR ERV1 0 411 164 3 1223 3130 82 7 0 chr9 83717797 83718214 -40357958 - BGLII LTR ERVK -1 420 1 3 1223 4329 131 54 15 chr9 83718921 83719595 -40356577 - RMER6A LTR ERVK 0 756 54 3 1223 198 0 0 0 chr9 83719595 83719617 -40356555 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1223 4329 131 54 15 chr9 83719617 83719670 -40356502 - RMER6A LTR ERVK -703 53 1 3 1223 235 302 97 70 chr9 83719918 83720032 -40356140 + B3A SINE B2 82 198 0 3 1223 2984 148 51 2 chr9 83720626 83721135 -40355037 + RLTR17 LTR ERVK 156 689 -3 3 1223 807 322 71 34 chr9 83721176 83721652 -40354520 - Charlie1a DNA MER1_type -800 655 162 3 1223 881 277 71 30 chr9 83721659 83722098 -40354074 + L1ME1 LINE L1 5476 5932 -247 3 1223 26 64 0 0 chr9 83722233 83722280 -40353892 + AT_rich Low_complexity Low_complexity 1 47 0 3 1223 351 0 0 0 chr9 83722706 83722745 -40353427 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1223 1025 243 98 40 chr9 83722957 83723205 -40352967 + B4 SINE B4 1 273 -19 3 1223 405 0 0 0 chr9 83723205 83723250 -40352922 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1223 399 56 0 0 chr9 83723250 83723303 -40352869 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1223 1025 243 98 40 chr9 83723303 83723327 -40352845 + B4 SINE B4 274 289 -3 3 1223 242 405 0 0 chr9 83723520 83723594 -40352578 + ID4 SINE ID 10 83 0 3 1223 224 421 26 0 chr9 83723532 83723608 -40352564 + ID_B1 SINE B4 23 100 -124 3 1223 1224 252 107 6 chr9 83723919 83724098 -40352074 + MTE2b LTR MaLR 16 208 -171 3 1223 333 0 0 0 chr9 83724098 83724135 -40352037 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1223 1224 252 107 6 chr9 83724135 83724282 -40351890 + MTE2b LTR MaLR 209 374 -5 3 1223 383 171 0 106 chr9 83724295 83724380 -40351792 + ID4 SINE ID 8 83 0 3 1223 701 280 116 89 chr9 83724462 83724823 -40351349 + MLT1B LTR MaLR 3 373 -17 3 1223 243 234 0 105 chr9 83725409 83725495 -40350677 - L1MEc LINE L1 -3904 2714 2638 3 1223 263 217 160 20 chr9 83725635 83725800 -40350372 - L1MEc LINE L1 -3995 2638 2445 3 1223 722 300 101 75 chr9 83726077 83726554 -40349618 - L1MEc LINE L1 -4692 1941 1382 3 1223 562 195 149 58 chr9 83726554 83726728 -40349444 - B3A SINE B2 -7 191 2 3 1223 722 297 106 79 chr9 83726728 83727212 -40348960 - L1MEc LINE L1 -5237 1381 897 3 1223 356 288 131 59 chr9 83727255 83727476 -40348696 + MER2 DNA MER2_type 8 244 -101 3 1223 225 239 25 101 chr9 83727484 83727563 -40348609 + B1_Mus2 SINE Alu 75 147 0 3 1223 289 274 33 74 chr9 83729020 83729142 -40347030 + PB1D10 SINE Alu 1 117 0 3 1223 210 154 0 0 chr9 83729550 83729589 -40346583 + A-rich Low_complexity Low_complexity 1 39 0 3 1223 353 281 19 24 chr9 83729749 83729861 -40346311 + PB1D10 SINE Alu 36 149 0 3 1223 423 0 0 0 chr9 83729971 83730018 -40346154 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1223 991 236 9 23 chr9 83730100 83730317 -40345855 - B3 SINE B2 -1 215 2 4 1223 2593 271 112 18 chr9 83730818 83731693 -40344479 + RCHARR1 DNA MER1_type 3 959 -15 4 1223 911 110 22 0 chr9 83731819 83731955 -40344217 + B1_Mus2 SINE Alu 9 147 0 4 1223 341 296 31 0 chr9 83732297 83732395 -40343777 + ID_B1 SINE B4 124 224 0 4 1223 946 152 20 7 chr9 83732440 83732586 -40343586 - B1_Mur2 SINE Alu -1 148 1 4 1223 1306 281 48 71 chr9 83734834 83735050 -40341122 - L1MA4A LINE L1 -1740 5904 5682 4 1223 885 254 50 0 chr9 83735050 83735251 -40340921 - B3 SINE B2 -4 212 2 4 1223 1306 279 38 70 chr9 83735251 83735544 -40340628 - L1MA4A LINE L1 -585 5718 5439 4 1223 1315 41 0 0 chr9 83735544 83735690 -40340482 - B1_Mm SINE Alu 0 147 2 4 1223 1306 285 67 70 chr9 83735690 83736064 -40340108 - L1MA4A LINE L1 -865 5438 5039 4 1223 312 27 0 0 chr9 83736433 83736470 -40339702 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1223 350 278 58 0 chr9 83738080 83738180 -40337992 - B1F2 SINE Alu -1 116 1 4 1223 293 256 51 13 chr9 83738533 83738612 -40337560 + ID4_ SINE ID 1 82 -1 4 1223 220 238 16 16 chr9 83738742 83738806 -40337366 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 4 1223 403 244 13 0 chr9 83740270 83740348 -40335824 + ID4_ SINE ID 2 80 -3 4 1223 397 277 70 63 chr9 83741059 83741217 -40334955 + B4A SINE B4 5 163 -129 4 1223 298 277 45 45 chr9 83742688 83742911 -40333261 - L1M5 LINE L1 -1695 4451 4229 4 1223 410 267 65 28 chr9 83742923 83743031 -40333141 - PB1D10 SINE Alu -1 116 5 4 1223 2556 71 18 15 chr9 83743367 83743710 -40332462 - L1_Mus3 LINE L1 -2 6636 6293 4 1223 24 0 0 0 chr9 83743798 83743822 -40332350 + AT_rich Low_complexity Low_complexity 1 24 0 4 1223 421 245 150 20 chr9 83744019 83744119 -40332053 - PB1 SINE Alu -3 124 12 4 1223 189 107 0 0 chr9 83744446 83744474 -40331698 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1223 596 275 57 52 chr9 83744583 83744775 -40331397 - B3A SINE B2 -4 194 2 4 1223 327 327 129 65 chr9 83744780 83744994 -40331178 + L1MB8 LINE L1 5639 5878 -306 4 1223 1245 68 0 0 chr9 83744994 83745142 -40331030 + B1_Mus1 SINE Alu 1 148 0 4 1223 374 313 61 20 chr9 83745142 83745329 -40330843 + L1MB8 LINE L1 5879 6066 -118 4 1223 631 252 141 49 chr9 83745868 83746131 -40330041 + B4A SINE B4 2 288 -4 4 1223 1732 130 75 77 chr9 83746201 83746550 -40329622 + ORR1B1 LTR MaLR 47 394 0 4 1223 209 301 144 16 chr9 83746811 83746936 -40329236 + MIRb SINE MIR 8 148 -120 4 1223 597 276 157 24 chr9 83747628 83747877 -40328295 - B4A SINE B4 -10 282 1 4 1223 212 125 20 20 chr9 83747885 83747934 -40328238 + T-rich Low_complexity Low_complexity 1 49 0 4 1223 26 30 0 0 chr9 83748367 83748400 -40327772 + AT_rich Low_complexity Low_complexity 1 33 0 4 1223 564 272 61 68 chr9 83748938 83749202 -40326970 + MIR SINE MIR 1 262 0 4 1223 587 218 76 54 chr9 83749258 83749481 -40326691 + L1MB3 LINE L1 5956 6183 0 4 1223 246 169 0 17 chr9 83750729 83750808 -40325364 + (TTTG)n Simple_repeat Simple_repeat 1 77 0 4 1223 1414 286 137 48 chr9 83751330 83751773 -40324399 - L1_Mur3 LINE L1 -63 5817 5336 4 1223 550 191 301 6 chr9 83751773 83751936 -40324236 - B3 SINE B2 -4 212 2 4 1223 1414 286 137 48 chr9 83751936 83752760 -40323412 - L1_Mur3 LINE L1 -545 5335 4438 4 1223 204 231 0 0 chr9 83754029 83754068 -40322104 + CT-rich Low_complexity Low_complexity 1 39 0 4 1223 416 276 20 20 chr9 83754068 83754168 -40322004 - PB1D7 SINE Alu -15 105 6 4 1223 721 147 30 12 chr9 83754287 83754452 -40321720 + C-rich Low_complexity Low_complexity 4 171 0 4 1223 450 192 0 49 chr9 83754455 83754537 -40321635 - B1_Mur3 SINE Alu -71 78 1 4 1223 291 235 73 0 chr9 83754477 83754545 -40321627 - ID_B1 SINE B4 -78 146 74 4 1223 194 291 49 37 chr9 83754719 83754801 -40321371 - L2 LINE L2 -3169 250 168 4 1223 215 274 0 0 chr9 83754854 83754905 -40321267 + B1F SINE Alu 14 64 -85 4 1224 21 0 0 0 chr9 83755936 83755957 -40320215 + AT_rich Low_complexity Low_complexity 1 21 0 4 1224 286 305 55 28 chr9 83757202 83757347 -40318825 - B1F2 SINE Alu 0 149 1 4 1224 224 270 178 10 chr9 83757770 83757871 -40318301 - RSINE1 SINE B4 -14 151 34 4 1224 387 262 47 0 chr9 83759384 83759515 -40316657 - B4A SINE B4 -151 141 2 4 1224 186 103 0 0 chr9 83760140 83760169 -40316003 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1224 227 323 15 0 chr9 83760255 83760320 -40315852 + CT-rich Low_complexity Low_complexity 1 66 0 4 1224 281 281 31 0 chr9 83760337 83760401 -40315771 - PB1D10 SINE Alu -51 66 1 4 1224 840 260 6 11 chr9 83760441 83760616 -40315556 + B3A SINE B2 1 174 -24 4 1224 216 0 0 0 chr9 83760761 83760785 -40315387 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 4 1224 217 277 0 0 chr9 83761023 83761070 -40315102 + B3 SINE B2 2 48 -168 4 1224 359 216 27 13 chr9 83762533 83762608 -40313564 - PB1D10 SINE Alu -12 105 30 4 1224 343 200 182 70 chr9 83762610 83762718 -40313454 - PB1D10 SINE Alu -19 128 14 4 1224 9722 72 25 3 chr9 83763567 83764909 -40311263 - MusHAL1 LINE L1 -34 2678 1307 4 1224 619 263 164 18 chr9 83764935 83765234 -40310938 + MER2 DNA MER2_type 1 342 -3 4 1224 229 220 0 0 chr9 83765333 83765383 -40310789 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1224 1004 41 0 0 chr9 83766129 83766252 -40309920 + B1_Mus1 SINE Alu 15 137 -11 4 1224 288 281 48 12 chr9 83766279 83766362 -40309810 + B4 SINE B4 113 198 -94 4 1224 588 143 0 0 chr9 83766293 83766377 -40309795 + B1_Mur3 SINE Alu 41 124 -25 4 1224 4911 53 11 0 chr9 83766847 83767416 -40308756 + L1_Mus1 LINE L1 5993 6567 0 4 1224 389 270 13 63 chr9 83767440 83767598 -40308574 - L1MC2 LINE L1 -16 6317 6168 4 1224 385 60 0 0 chr9 83767768 83767850 -40308322 - L1_Mus2 LINE L1 0 6566 6507 4 1224 471 234 32 42 chr9 83767874 83768074 -40308098 - L1MC2 LINE L1 -488 5856 5652 4 1224 375 349 59 20 chr9 83768124 83768326 -40307846 - L1MC2 LINE L1 -795 5538 5329 4 1224 225 0 0 0 chr9 83769575 83769600 -40306572 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1224 300 322 89 28 chr9 83769758 83769972 -40306200 + L2 LINE L2 2263 2489 -930 4 1224 266 147 114 29 chr9 83769987 83770057 -40306115 + PB1D10 SINE Alu 42 117 0 4 1224 495 265 94 134 chr9 83770127 83770501 -40305671 - ORR1E LTR MaLR 0 359 1 4 1224 477 308 155 35 chr9 83770502 83770782 -40305390 + L2 LINE L2 2533 2862 -557 4 1224 389 167 0 0 chr9 83770782 83770860 -40305312 - L1Md_A LINE L1 -2 6580 6503 4 1224 477 308 155 35 chr9 83770860 83770953 -40305219 + L2 LINE L2 2863 2951 -468 4 1224 1940 156 62 23 chr9 83770980 83771334 -40304838 - ORR1C1 LTR MaLR -8 370 3 4 1224 428 156 11 0 chr9 83771334 83771424 -40304748 + GA-rich Low_complexity Low_complexity 1 91 0 4 1224 435 259 22 1 chr9 83772172 83772271 -40303901 + B1F1 SINE Alu 7 106 -11 4 1224 1626 67 0 5 chr9 83772682 83772878 -40303294 - B2_Mm2 SINE B2 0 195 1 4 1224 798 220 94 61 chr9 83772917 83773130 -40303042 - ID_B1 SINE B4 -4 220 1 4 1224 586 181 8 6 chr9 83773468 83773588 -40302584 - B1F SINE Alu -20 128 8 4 1224 3830 134 150 14 chr9 83774299 83774964 -40301208 + RMER6A LTR ERVK 1 756 0 4 1224 347 213 26 175 chr9 83776431 83776585 -40299587 + MER5A DNA MER1_type 27 157 -32 4 1224 601 214 22 37 chr9 83777737 83777873 -40298299 + B1_Mur1 SINE Alu 3 136 -13 4 1224 836 148 20 34 chr9 83778078 83778225 -40297947 - B1_Mus1 SINE Alu 0 148 4 4 1224 456 250 70 18 chr9 83778775 83778889 -40297283 - RSINE1 SINE B4 -45 120 1 4 1224 572 231 45 30 chr9 83779510 83779644 -40296528 - B1_Mur1 SINE Alu -12 137 2 4 1224 234 250 12 62 chr9 83779686 83779767 -40296405 - MT2B2 LTR ERVL -345 239 163 4 1224 291 345 71 15 chr9 83780166 83780363 -40295809 + MLT1L LTR MaLR 201 408 -202 4 1224 337 306 16 8 chr9 83780651 83780776 -40295396 + CT-rich Low_complexity Low_complexity 3 128 0 4 1224 450 0 0 0 chr9 83781045 83781095 -40295077 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1224 332 280 83 18 chr9 83782340 83782449 -40293723 - PB1D7 SINE Alu -2 118 3 4 1224 513 92 0 0 chr9 83782500 83782576 -40293596 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1224 364 250 76 0 chr9 83782578 83782670 -40293502 - PB1 SINE Alu -28 99 1 4 1224 234 0 0 0 chr9 83782721 83782747 -40293425 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 4 1224 281 134 15 24 chr9 83782755 83782821 -40293351 - B2_Mm2 SINE B2 -107 109 49 4 1224 358 221 0 0 chr9 83783906 83783974 -40292198 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 4 1224 1519 234 102 57 chr9 83783991 83784441 -40291731 - Lx8 LINE L1 0 7473 6996 4 1224 1793 118 165 22 chr9 83784441 83784762 -40291410 + ORR1B2 LTR MaLR 1 367 0 4 1224 1519 234 102 57 chr9 83784762 83784801 -40291371 - Lx8 LINE L1 -478 6995 6962 4 1224 234 274 0 110 chr9 83786466 83786548 -40289624 - PB1D10 SINE Alu -7 110 38 4 1224 744 43 0 0 chr9 83786552 83786644 -40289528 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1224 318 335 96 51 chr9 83786666 83786959 -40289213 + MLT1F LTR MaLR 149 454 -94 4 1224 556 242 106 0 chr9 83787077 83787209 -40288963 - RSINE1 SINE B4 -17 148 3 4 1224 180 111 0 0 chr9 83787294 83787321 -40288851 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 4 1224 586 285 26 72 chr9 83787993 83788186 -40287986 + B3A SINE B2 9 192 -6 4 1224 831 226 22 33 chr9 83788318 83788501 -40287671 + B3A SINE B2 2 182 -16 4 1224 275 104 21 0 chr9 83788508 83788556 -40287616 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1224 1078 74 0 0 chr9 83788577 83788712 -40287460 + B1_Mus2 SINE Alu 1 135 -12 5 1224 240 143 0 39 chr9 83788809 83788860 -40287312 + B1_Mur3 SINE Alu 89 137 -12 5 1224 281 280 178 30 chr9 83789013 83789282 -40286890 + L1MC4 LINE L1 6931 7239 -803 5 1224 657 327 57 37 chr9 83789291 83789433 -40286739 - Lx8 LINE L1 -2 7471 7326 5 1224 459 0 0 0 chr9 83789433 83789484 -40286688 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1224 657 327 57 37 chr9 83789484 83789693 -40286479 - Lx8 LINE L1 -148 7325 7113 5 1224 534 294 73 33 chr9 83789705 83789979 -40286193 + L1MC4 LINE L1 7270 7554 -488 5 1224 201 221 86 29 chr9 83790024 83790094 -40286078 - MER5A DNA MER1_type -20 169 96 5 1224 906 281 150 24 chr9 83790268 83790886 -40285286 - Tigger7 DNA MER2_type -97 608 8 5 1224 334 277 132 20 chr9 83790885 83791036 -40285136 + MER58B DNA MER1_type 166 333 -8 5 1224 298 339 40 11 chr9 83791099 83791275 -40284897 + L1MC4 LINE L1 7640 7820 -62 5 1224 839 289 130 12 chr9 83792079 83792418 -40283754 + MTEb LTR MaLR 1 379 0 5 1224 931 237 83 58 chr9 83792418 83792680 -40283492 + MTEb-int LTR MaLR 1 281 -1299 5 1224 2473 156 54 71 chr9 83792680 83793031 -40283141 + RLTR24 LTR ERV1 1 343 -186 5 1224 183 80 0 0 chr9 83793031 83793056 -40283116 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1224 2473 156 54 71 chr9 83793056 83793242 -40282930 + RLTR24 LTR ERV1 344 529 0 5 1224 931 237 83 58 chr9 83793242 83793306 -40282866 + MTEb-int LTR MaLR 282 335 -1245 5 1224 1178 258 60 27 chr9 83793335 83793702 -40282470 + MTE2b LTR MaLR 1 379 0 5 1224 592 318 6 5 chr9 83793764 83793943 -40282229 - B3A SINE B2 -27 189 19 5 1224 389 244 79 56 chr9 83793949 83794028 -40282144 - B1F SINE Alu -16 133 51 5 1224 909 104 0 0 chr9 83794028 83794163 -40282009 + (TTCC)n Simple_repeat Simple_repeat 2 136 0 5 1224 389 244 79 56 chr9 83794163 83794209 -40281963 - B1F SINE Alu -99 50 5 5 1224 787 108 262 38 chr9 83795029 83795212 -40280960 - URR1B DNA MER1_type 0 225 2 5 1224 441 0 0 0 chr9 83795251 83795300 -40280872 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1224 1219 72 59 32 chr9 83795305 83795491 -40280681 + B2_Mm2 SINE B2 2 192 -3 5 1224 657 52 132 0 chr9 83795611 83795747 -40280425 + (TATATG)n Simple_repeat Simple_repeat 1 154 0 5 1224 218 32 0 31 chr9 83796063 83796095 -40280077 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1224 297 0 0 0 chr9 83796898 83796931 -40279241 + (CTGTG)n Simple_repeat Simple_repeat 5 37 0 5 1224 230 195 40 139 chr9 83797387 83797488 -40278684 + MT2B LTR ERVL 151 241 -360 5 1224 427 227 0 0 chr9 83797423 83797511 -40278661 + PB1D10 SINE Alu 19 106 -11 5 1224 182 37 0 36 chr9 83797513 83797541 -40278631 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1224 2026 270 30 51 chr9 83797605 83798229 -40277943 + Lx8 LINE L1 6423 7033 -440 5 1224 238 154 21 42 chr9 83798296 83798391 -40277781 + G-rich Low_complexity Low_complexity 2 94 0 5 1224 903 283 106 19 chr9 83798440 83798800 -40277372 + Lx8 LINE L1 7025 7415 -58 5 1224 23 33 0 0 chr9 83798884 83798914 -40277258 + AT_rich Low_complexity Low_complexity 1 30 0 5 1224 432 0 0 0 chr9 83799238 83799286 -40276886 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1224 304 278 18 34 chr9 83799653 83799789 -40276383 - PB1D10 SINE Alu -9 140 1 5 1224 934 33 8 0 chr9 83800006 83800127 -40276045 - B1_Mus1 SINE Alu 0 148 27 5 1224 387 232 73 81 chr9 83800012 83800148 -40276024 - B4A SINE B4 -71 221 87 5 1224 358 263 166 40 chr9 83800191 83800444 -40275728 - L1MEf LINE L1 -4221 1979 1695 5 1224 516 16 0 0 chr9 83800534 83800595 -40275577 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1224 403 282 16 39 chr9 83800610 83800739 -40275433 - RSINE1 SINE B4 -39 126 1 5 1224 209 264 19 0 chr9 83800798 83800851 -40275321 + CT-rich Low_complexity Low_complexity 3 56 0 5 1224 480 18 0 0 chr9 83800853 83800910 -40275262 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1224 1697 298 71 22 chr9 83800951 83801850 -40274322 - L1M4 LINE L1 -2928 3218 2276 5 1224 232 299 82 20 chr9 83802590 83802737 -40273435 - L1M2 LINE L1 -2227 4621 4466 5 1224 280 320 47 16 chr9 83802880 83803007 -40273165 - B1F SINE Alu -8 141 11 5 1224 316 230 23 31 chr9 83803019 83803108 -40273064 - L1M2 LINE L1 -2545 4300 4214 5 1224 300 172 0 0 chr9 83803350 83803408 -40272764 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1224 422 318 27 64 chr9 83803418 83803606 -40272566 + B3A SINE B2 2 182 -16 5 1224 1012 79 30 6 chr9 83803640 83803805 -40272367 + Lx LINE L1 6480 6648 -6 5 1224 22 99 0 0 chr9 83804330 83804401 -40271771 + AT_rich Low_complexity Low_complexity 1 71 0 5 1224 245 308 0 0 chr9 83805391 83805456 -40270716 + ID4 SINE ID 5 69 -14 5 1224 225 204 19 0 chr9 83805765 83805819 -40270353 - L1M2 LINE L1 -4330 2519 2465 5 1224 1255 122 37 0 chr9 83805858 83806046 -40270126 + B2_Mm2 SINE B2 1 195 0 5 1224 4423 116 35 45 chr9 83806057 83806532 -40269640 + L1VL4 LINE L1 247 743 -5559 5 1224 1206 61 0 0 chr9 83806532 83806679 -40269493 + B1_Mus2 SINE Alu 1 147 0 5 1224 11333 78 8 6 chr9 83806679 83808361 -40267811 + L1VL4 LINE L1 744 2400 -1159 5 1224 648 213 77 6 chr9 83808842 83809012 -40267160 - URR1B DNA MER1_type -7 218 37 5 1224 218 353 0 45 chr9 83809553 83809642 -40266530 - B1F SINE Alu -47 102 18 5 1224 315 333 79 34 chr9 83809739 83810349 -40265823 - L1M2 LINE L1 -4305 2544 1908 5 1224 353 108 0 97 chr9 83810844 83810916 -40265256 + B1_Mur4 SINE Alu 86 150 0 5 1224 202 111 67 0 chr9 83810932 83810977 -40265195 + (CAA)n Simple_repeat Simple_repeat 1 48 0 5 1224 207 88 0 0 chr9 83811684 83811718 -40264454 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1224 384 235 35 0 chr9 83811732 83811817 -40264355 - PB1D7 SINE Alu -20 100 13 5 1224 233 239 59 15 chr9 83812372 83812440 -40263732 - MLT1A0 LTR MaLR -214 151 81 5 1224 897 251 182 40 chr9 83812536 83812601 -40263571 - L1MB7 LINE L1 -71 6113 6050 5 1224 1792 179 42 68 chr9 83812601 83812985 -40263187 + ORR1D1 LTR MaLR 1 374 0 5 1224 897 251 182 40 chr9 83812985 83813392 -40262780 - L1MB7 LINE L1 -135 6049 5574 5 1224 260 271 4 0 chr9 83813433 83813542 -40262630 - L1M1 LINE L1 -836 5464 5353 5 1224 1636 167 37 30 chr9 83813547 83813875 -40262297 - ORR1C1 LTR MaLR -48 330 1 5 1224 375 201 92 110 chr9 83814307 83814480 -40261692 + RMER20B LTR ERVK 187 356 -271 5 1224 358 278 80 40 chr9 83814646 83814726 -40261446 - L1MD2 LINE L1 -386 5973 5886 5 1224 594 0 0 0 chr9 83814726 83814792 -40261380 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 5 1224 358 278 80 40 chr9 83814792 83814861 -40261311 - L1MD2 LINE L1 -474 5885 5818 5 1224 357 197 0 13 chr9 83814974 83815051 -40261121 + B3A SINE B2 3 78 -120 5 1224 2623 80 3 3 chr9 83815051 83815433 -40260739 - L1_Mur2 LINE L1 -833 3081 2704 5 1224 399 153 0 45 chr9 83815435 83815524 -40260648 - B1_Mur3 SINE Alu 0 149 65 5 1224 355 228 38 38 chr9 83815512 83815617 -40260555 - MT2A LTR ERVL -428 105 1 5 1224 302 291 27 0 chr9 83815646 83815756 -40260416 - L1MC LINE L1 -516 5817 5705 5 1224 485 296 7 7 chr9 83815772 83815915 -40260257 + ID_B1 SINE B4 80 222 -2 5 1224 468 298 8 0 chr9 83815928 83816059 -40260113 - L1MC LINE L1 -667 5677 5546 5 1224 1795 226 52 12 chr9 83816077 83816480 -40259692 - MTD LTR MaLR 0 419 1 5 1224 392 0 21 0 chr9 83816521 83816569 -40259603 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1224 443 297 31 0 chr9 83816572 83816700 -40259472 - RSINE1 SINE B4 -20 145 14 5 1224 247 152 0 81 chr9 83817879 83817965 -40258207 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 1224 21 36 0 0 chr9 83817971 83817999 -40258173 + AT_rich Low_complexity Low_complexity 1 28 0 5 1224 912 24 211 0 chr9 83818049 83818172 -40258000 - B1_Mur4 SINE Alu 0 150 2 5 1224 1106 36 65 0 chr9 83820469 83820607 -40255565 - B1_Mus2 SINE Alu 0 147 1 5 1224 258 32 0 0 chr9 83820718 83820749 -40255423 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1224 977 58 0 21 chr9 83821049 83821189 -40254983 + B1_Mm SINE Alu 11 147 0 5 1224 249 108 0 0 chr9 83821189 83821226 -40254946 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1224 210 71 0 0 chr9 83821405 83821433 -40254739 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 5 1224 209 333 76 21 chr9 83821545 83821689 -40254483 - MIRb SINE MIR -82 186 35 5 1224 1231 232 82 28 chr9 83822536 83822855 -40253317 - MTE2b LTR MaLR -34 345 10 5 1224 261 258 10 25 chr9 83823097 83823193 -40252979 - MIR SINE MIR -76 192 101 5 1224 2818 161 15 53 chr9 83823196 83823782 -40252390 - RMER6D LTR ERVK -1 719 157 5 1224 2298 57 83 0 chr9 83823782 83824083 -40252089 + ORR1A2 LTR MaLR 1 326 -1 5 1224 764 166 62 31 chr9 83824085 83824247 -40251925 + ORR1A3-int LTR MaLR 1 167 -1796 5 1224 699 133 15 45 chr9 83824218 83824352 -40251820 - ORR1A2 LTR MaLR -197 130 1 5 1224 1004 150 6 0 chr9 83824352 83824511 -40251661 - RMER6D LTR ERVK -560 160 1 5 1224 10890 201 31 25 chr9 83824520 83826894 -40249278 - MurERV4-int LTR ERVK -118 5142 2666 5 1224 1147 62 7 0 chr9 83826894 83827039 -40249133 - B1_Mus1 SINE Alu 0 148 3 5 1224 10890 214 36 25 chr9 83827039 83827435 -40248737 - MurERV4-int LTR ERVK -2229 3031 2645 5 1224 5141 172 15 7 chr9 83827509 83828399 -40247773 - MurERV4-int LTR ERVK -1400 1777 881 5 1224 1593 148 60 96 chr9 83828393 83828524 -40247648 - MurERV4-int LTR ERVK -2420 757 629 5 1224 1289 88 66 0 chr9 83828524 83828706 -40247466 - B2_Mm2 SINE B2 0 195 2 5 1224 1593 148 60 96 chr9 83828706 83828939 -40247233 - MurERV4-int LTR ERVK -2549 628 406 5 1224 19566 43 4 1 chr9 83828953 83831975 -40244197 - L1Md_F3 LINE L1 0 6584 3548 5 1224 995 9 0 0 chr9 83831975 83832082 -40244090 - U6 snRNA snRNA 0 107 1 5 1224 1895 153 106 8 chr9 83832085 83832442 -40243730 - MurERV4-int LTR ERVK -2779 398 7 5 1224 2475 168 15 5 chr9 83832469 83832835 -40243337 - RMER6D LTR ERVK -5 715 366 5 1224 1599 28 2 0 chr9 83832835 83833376 -40242796 + (CA)n Simple_repeat Simple_repeat 1 542 0 5 1224 2475 174 19 78 chr9 83833376 83833751 -40242421 - RMER6D LTR ERVK -321 369 2 5 1224 235 349 24 0 chr9 83834119 83834202 -40241970 + CT-rich Low_complexity Low_complexity 1 85 0 5 1224 372 311 0 0 chr9 83834225 83834331 -40241841 - B1F SINE Alu -31 118 13 5 1224 212 370 0 48 chr9 83834331 83834350 -40241822 - ID_B1 SINE B4 -28 196 78 5 1224 530 219 0 16 chr9 83835251 83835372 -40240800 - B1_Mus2 SINE Alu -8 139 21 5 1224 329 278 90 32 chr9 83835348 83835504 -40240668 + B4A SINE B4 66 230 -62 5 1224 533 212 90 8 chr9 83835507 83835640 -40240532 + B1_Mur2 SINE Alu 5 148 -1 5 1224 180 0 0 0 chr9 83835659 83835679 -40240493 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1224 244 274 16 0 chr9 83835679 83835741 -40240431 + B4A SINE B4 230 292 0 5 1224 261 0 0 0 chr9 83835855 83835884 -40240288 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1224 2927 6 5 123 chr9 83836154 83836570 -40239602 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1224 1041 86 159 0 chr9 83836570 83836733 -40239439 + IAPEz-int LTR ERVK 8 196 -6285 5 1224 55908 21 20 2 chr9 83836704 83843059 -40233113 + IAPEz-int LTR ERVK 67 6481 0 5 1224 2927 6 5 123 chr9 83843059 83843475 -40232697 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1224 312 188 125 34 chr9 83843632 83843720 -40232452 - ID_B1 SINE B4 0 224 129 5 1224 329 158 0 0 chr9 83843668 83843725 -40232447 - PB1D10 SINE Alu -18 99 43 6 1224 727 211 246 15 chr9 83844103 83844423 -40231749 + MTD LTR MaLR 6 419 0 6 1224 21 36 0 0 chr9 83844572 83844600 -40231572 + AT_rich Low_complexity Low_complexity 1 28 0 6 1224 282 211 0 0 chr9 83844635 83844692 -40231480 - B3 SINE B2 -86 130 74 6 1224 519 17 0 0 chr9 83846355 83846415 -40229757 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1224 426 39 0 0 chr9 83846415 83846466 -40229706 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1224 438 266 0 81 chr9 83846510 83846691 -40229481 - L1MA4 LINE L1 -364 5936 5705 6 1224 29 47 0 0 chr9 83846697 83846740 -40229432 + AT_rich Low_complexity Low_complexity 1 43 0 6 1224 675 239 16 58 chr9 83846741 83846932 -40229240 - B3A SINE B2 -1 197 15 6 1224 614 197 11 27 chr9 83847003 83847186 -40228986 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1224 2167 128 6 15 chr9 83847754 83848086 -40228086 + ORR1A4 LTR MaLR 1 329 0 6 1224 294 234 50 67 chr9 83848105 83848224 -40227948 - MLT2C2 LTR ERVL -152 312 196 6 1224 186 133 0 0 chr9 83850049 83850079 -40226093 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1224 1757 204 18 21 chr9 83850289 83850675 -40225497 + MTD LTR MaLR 21 405 -14 6 1224 318 231 10 81 chr9 83852982 83852994 -40223178 + MT2B LTR ERVL 153 157 -444 6 1224 449 221 29 9 chr9 83852994 83853099 -40223073 + B1_Mur2 SINE Alu 1 107 -42 6 1224 351 0 0 0 chr9 83853157 83853196 -40222976 + (TATG)n Simple_repeat Simple_repeat 4 42 0 6 1224 488 219 216 40 chr9 83853197 83853373 -40222799 + ID_B1 SINE B4 15 221 -3 6 1224 556 97 21 0 chr9 83853377 83853470 -40222702 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 6 1224 292 266 13 0 chr9 83854333 83854412 -40221760 + ID2 SINE ID 4 83 0 6 1224 839 203 0 0 chr9 83854464 83854612 -40221560 - B1_Mur1 SINE Alu 0 149 2 6 1224 667 254 5 32 chr9 83854904 83855091 -40221081 + B3A SINE B2 1 182 -16 6 1224 279 0 0 0 chr9 83855547 83855578 -40220594 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1224 210 229 33 0 chr9 83856749 83856810 -40219362 + CT-rich Low_complexity Low_complexity 2 64 0 6 1224 340 191 15 0 chr9 83856814 83856882 -40219290 - PB1D10 SINE Alu -34 83 15 6 1224 211 306 60 51 chr9 83858630 83858747 -40217425 - MER5B DNA MER1_type -55 123 6 6 1224 302 321 28 56 chr9 83859201 83859379 -40216793 + HAL1 LINE L1 234 406 -2101 6 1224 180 97 0 0 chr9 83860113 83860144 -40216028 + (G)n Simple_repeat Simple_repeat 1 31 0 6 1224 568 120 89 10 chr9 83860910 83861011 -40215161 + Lx9 LINE L1 7326 7434 -210 6 1224 220 396 10 10 chr9 83861116 83861218 -40214954 - MER5A DNA MER1_type -34 155 54 6 1224 889 217 109 26 chr9 83861657 83861922 -40214250 + Lx9 LINE L1 7358 7644 0 6 1224 1142 70 0 0 chr9 83861929 83862071 -40214101 + B1_Mus2 SINE Alu 2 143 -4 6 1224 635 139 0 0 chr9 83862330 83862431 -40213741 - B3 SINE B2 -114 102 2 6 1224 257 239 0 66 chr9 83863559 83863635 -40212537 - ID4_ SINE ID -11 72 2 6 1224 974 176 109 15 chr9 83864664 83864866 -40211306 - URR1B DNA MER1_type 0 225 5 6 1224 450 258 96 18 chr9 83865545 83865774 -40210398 - RLTR15 LTR ERVK -68 291 45 6 1224 678 191 13 45 chr9 83867450 83867604 -40208568 - B1_Mur4 SINE Alu 0 150 2 6 1224 673 279 12 1 chr9 83869234 83869400 -40206772 + B3A SINE B2 2 168 -30 6 1224 300 27 0 0 chr9 83869400 83869437 -40206735 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1224 345 284 41 93 chr9 83869437 83869464 -40206708 + B2_Mm2 SINE B2 161 185 -10 6 1224 681 267 125 17 chr9 83869946 83870243 -40205929 - Lx8 LINE L1 -17 7456 7128 6 1224 830 231 97 0 chr9 83870277 83870441 -40205731 + B3 SINE B2 3 185 -31 6 1224 336 24 0 0 chr9 83870441 83870482 -40205690 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1224 830 231 97 0 chr9 83870482 83870512 -40205660 + B3 SINE B2 186 215 -1 6 1224 554 265 49 0 chr9 83870522 83870684 -40205488 - B3 SINE B2 -7 209 40 6 1224 387 92 46 0 chr9 83871247 83871312 -40204860 - B1_Mur1 SINE Alu -5 144 77 6 1224 552 166 232 86 chr9 83871308 83871506 -40204666 + MTD LTR MaLR 185 411 -8 6 1224 3265 37 20 12 chr9 83871619 83872027 -40204145 - IAPLTR2a LTR ERVK 0 411 1 6 1224 182 290 132 24 chr9 83872175 83872341 -40203831 + L2 LINE L2 2530 2713 -706 6 1224 849 285 39 60 chr9 83872564 83872896 -40203276 + MTE2a LTR MaLR 43 367 -12 6 1224 656 169 0 8 chr9 83873308 83873439 -40202733 + CT-rich Low_complexity Low_complexity 4 133 0 6 1224 1495 58 16 0 chr9 83873442 83873630 -40202542 - B2_Mm2 SINE B2 -4 191 1 6 1224 180 0 0 0 chr9 83873634 83873654 -40202518 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1224 873 252 201 20 chr9 83873881 83874001 -40202171 + MTD LTR MaLR 2 128 -291 6 1224 216 0 0 0 chr9 83874001 83874025 -40202147 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1224 873 252 201 20 chr9 83874025 83874248 -40201924 + MTD LTR MaLR 129 407 -12 6 1224 236 289 47 19 chr9 83874449 83874555 -40201617 + Charlie13a DNA Charlie 272 380 -1134 6 1224 710 240 31 35 chr9 83874920 83875149 -40201023 + Charlie13a DNA Charlie 822 1049 -465 6 1224 723 270 14 71 chr9 83875392 83875687 -40200485 - L1M3 LINE L1 -2368 3772 3495 6 1224 838 272 1 30 chr9 83875690 83875923 -40200249 - B4 SINE B4 0 292 83 6 1224 1726 273 38 21 chr9 83876032 83876553 -40199619 - Lx7 LINE L1 -361 7335 6806 6 1224 861 186 68 0 chr9 83876555 83876732 -40199440 - L1_Mur3 LINE L1 -3615 2265 2077 6 1224 684 141 23 0 chr9 83876744 83876872 -40199300 - Lx2 LINE L1 -1 6996 6866 6 1224 857 66 131 0 chr9 83876872 83877009 -40199163 + B2_Mm2 SINE B2 36 190 -5 6 1224 2011 206 84 35 chr9 83877032 83877556 -40198616 - L1_Mur3 LINE L1 -3819 2061 1501 6 1224 1268 177 18 5 chr9 83877556 83877777 -40198395 + URR1B DNA MER1_type 1 224 -1 6 1224 2011 206 84 35 chr9 83877777 83877845 -40198327 - L1_Mur3 LINE L1 -4380 1500 1440 6 1224 3162 40 0 0 chr9 83877975 83878376 -40197796 + RLTR13C2 LTR ERVK 1 401 -407 6 1224 822 113 21 28 chr9 83878370 83878515 -40197657 + RLTR13C2 LTR ERVK 665 808 0 6 1224 361 235 10 10 chr9 83878675 83878774 -40197398 - L1_Mur3 LINE L1 -6779 949 851 6 1224 977 83 17 4 chr9 83879320 83879466 -40196706 - B1_Mm SINE Alu -5 142 13 6 1224 508 279 104 79 chr9 83879477 83879572 -40196600 - L1_Rod LINE L1 -2425 3422 3336 6 1224 717 226 20 0 chr9 83879572 83879718 -40196454 - B1F2 SINE Alu 0 149 1 6 1224 508 279 104 79 chr9 83879718 83880190 -40195982 - L1_Rod LINE L1 -2512 3335 2841 6 1224 180 176 0 0 chr9 83880818 83880852 -40195320 + T-rich Low_complexity Low_complexity 2 35 0 6 1224 863 243 25 147 chr9 83880852 83881247 -40194925 - ORR1E LTR MaLR -10 349 3 6 1224 219 139 0 27 chr9 83881270 83881307 -40194865 + C-rich Low_complexity Low_complexity 3 38 0 6 1224 297 218 84 84 chr9 83881443 83881538 -40194634 - L1M5 LINE L1 -3299 2847 2753 6 1224 234 0 0 0 chr9 83883584 83883610 -40192562 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1224 1068 219 24 9 chr9 83883891 83884103 -40192069 + B3 SINE B2 2 216 0 6 1224 861 99 7 66 chr9 83884119 83884270 -40191902 + B1_Mus1 SINE Alu 7 148 0 6 1224 21 0 0 0 chr9 83884365 83884386 -40191786 + AT_rich Low_complexity Low_complexity 1 21 0 6 1224 235 284 45 0 chr9 83884487 83884554 -40191618 + ID SINE ID 2 71 -153 6 1224 205 182 127 0 chr9 83884784 83884839 -40191333 + MIR SINE MIR 56 117 -145 6 2 34991 44 0 1 chr9 83886078 83891516 -40184656 + L1Md_T LINE L1 73 5589 -297 6 1225 9003 33 0 0 chr9 83891516 83892512 -40183660 + L1Md_T LINE L1 5590 6585 0 6 1225 351 0 0 0 chr9 83892534 83892573 -40183599 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1225 309 314 73 67 chr9 83892573 83892887 -40183285 - L1ME2 LINE L1 -27 6137 5822 6 1225 2214 20 12 4 chr9 83894218 83894474 -40181698 - L1Md_F2 LINE L1 -1 6581 6324 6 1225 311 269 65 0 chr9 83894647 83894740 -40181432 - RMER1C Other Other -15 1327 1229 6 1225 628 270 22 28 chr9 83894747 83894926 -40181246 - Lx8 LINE L1 -146 7327 7150 6 1225 1699 27 5 0 chr9 83895085 83895271 -40180901 + B2_Mm1a SINE B2 1 187 -6 6 1225 579 190 32 65 chr9 83895690 83895814 -40180358 + PB1D9 SINE Alu 1 120 0 6 1225 195 42 0 0 chr9 83895814 83895838 -40180334 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1225 200 118 29 0 chr9 83895844 83895878 -40180294 + (CAA)n Simple_repeat Simple_repeat 3 37 0 6 1225 334 343 75 50 chr9 83895939 83896246 -40179926 + Kanga1b DNA Tc2 249 564 -215 6 1225 644 257 103 27 chr9 83896246 83896430 -40179742 - B3A SINE B2 0 198 1 6 1225 334 343 75 50 chr9 83896430 83896441 -40179731 + Kanga1b DNA Tc2 565 575 -204 6 1225 22 0 0 0 chr9 83896441 83896463 -40179709 + AT_rich Low_complexity Low_complexity 1 22 0 6 1225 225 0 0 0 chr9 83896582 83896607 -40179565 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1225 3041 272 136 39 chr9 83896731 83897271 -40178901 - Lx8 LINE L1 -8 7465 6870 6 1225 3210 163 16 130 chr9 83897271 83897961 -40178211 - RMER19C LTR ERVK 0 611 1 6 1225 3041 272 136 39 chr9 83897961 83898729 -40177443 - Lx8 LINE L1 -604 6869 6030 6 1225 646 230 96 1 chr9 83898789 83898971 -40177201 + Lx7 LINE L1 5742 5941 -1703 6 1225 186 43 0 0 chr9 83899415 83899438 -40176734 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1225 789 65 0 0 chr9 83899438 83899545 -40176627 + (GA)n Simple_repeat Simple_repeat 1 108 0 6 1225 921 275 40 28 chr9 83899552 83899803 -40176369 + B4 SINE B4 39 292 0 6 1225 21 0 0 0 chr9 83899965 83899986 -40176186 + AT_rich Low_complexity Low_complexity 1 21 0 6 1225 355 358 26 20 chr9 83903312 83903463 -40172709 - RSINE1 SINE B4 -12 153 2 6 1225 24 0 0 0 chr9 83903718 83903742 -40172430 + AT_rich Low_complexity Low_complexity 1 24 0 6 1225 23 33 0 0 chr9 83904311 83904341 -40171831 + AT_rich Low_complexity Low_complexity 1 30 0 6 1225 342 0 0 0 chr9 83904356 83904394 -40171778 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1225 514 358 72 9 chr9 83904530 83904851 -40171321 - Lx8 LINE L1 -167 7306 6966 7 1225 565 242 15 15 chr9 83904972 83905106 -40171066 - ID_B1 SINE B4 -10 214 81 7 1225 233 119 24 0 chr9 83905472 83905514 -40170658 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 7 1225 493 242 0 10 chr9 83905520 83905616 -40170556 - B3 SINE B2 -121 95 1 7 1225 22 0 0 0 chr9 83907087 83907109 -40169063 + AT_rich Low_complexity Low_complexity 1 22 0 7 1225 5712 187 77 21 chr9 83907212 83908498 -40167674 - Lx9 LINE L1 0 7644 6287 7 1225 257 311 87 25 chr9 83908691 83908968 -40167204 - L1MEg LINE L1 -4029 2055 1762 7 1225 247 241 0 0 chr9 83909123 83909181 -40166991 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1225 480 228 0 0 chr9 83909181 83909295 -40166877 + (TATG)n Simple_repeat Simple_repeat 2 115 0 7 1225 353 297 12 19 chr9 83909369 83909530 -40166642 + (CATA)n Simple_repeat Simple_repeat 1 160 0 7 1225 507 90 0 0 chr9 83909652 83909730 -40166442 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 1225 828 256 11 16 chr9 83910114 83910297 -40165875 + B3 SINE B2 14 195 -21 7 1225 543 308 41 0 chr9 83911228 83911397 -40164775 + Lx8 LINE L1 6738 6913 -560 7 1225 2359 166 22 15 chr9 83912000 83912404 -40163768 + MTB_Mm LTR MaLR 1 407 0 7 1225 316 298 248 15 chr9 83914335 83914468 -40161704 - RSINE1 SINE B4 0 165 2 7 1225 246 345 26 8 chr9 83915155 83915272 -40160900 - MIRb SINE MIR -72 196 78 7 1225 231 36 0 0 chr9 83915433 83915461 -40160711 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 1225 26 0 0 0 chr9 83915969 83915995 -40160177 + AT_rich Low_complexity Low_complexity 1 26 0 7 1225 186 43 0 0 chr9 83916000 83916023 -40160149 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1225 303 305 24 41 chr9 83916045 83916168 -40160004 - RSINE1 SINE B4 -42 123 3 7 1225 39 22 0 0 chr9 83916379 83916425 -40159747 + AT_rich Low_complexity Low_complexity 1 46 0 7 1225 268 227 29 43 chr9 83916851 83916920 -40159252 + MTC LTR MaLR 1 68 -353 7 1225 362 123 18 0 chr9 83916936 83916993 -40159179 + MTD LTR MaLR 362 419 0 7 1225 462 36 0 0 chr9 83917309 83917365 -40158807 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1225 321 310 61 9 chr9 83918038 83918152 -40158020 - MTEa LTR MaLR -8 371 252 7 1225 365 298 133 53 chr9 83918685 83918873 -40157299 - MTEa LTR MaLR -162 217 15 7 1225 473 272 1 6 chr9 83919033 83919148 -40157024 - PB1D7 SINE Alu -33 116 8 7 1225 1605 143 242 14 chr9 83919393 83919690 -40156482 + ORR1B2 LTR MaLR 1 365 -2 7 1225 2743 185 51 38 chr9 83920569 83921182 -40154990 - RMER20B LTR ERVK -2 625 5 7 1225 224 343 29 0 chr9 83921684 83921754 -40154418 - AluF_3 SINE Alu -102 209 138 7 1225 24 53 0 0 chr9 83922672 83922710 -40153462 + AT_rich Low_complexity Low_complexity 1 38 0 7 1225 219 88 0 0 chr9 83923018 83923052 -40153120 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 7 1225 189 121 0 0 chr9 83923359 83923392 -40152780 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1225 1091 58 0 0 chr9 83923396 83923535 -40152637 - B1_Mus2 SINE Alu 0 147 9 7 1225 189 0 0 0 chr9 83924095 83924116 -40152056 + (TTA)n Simple_repeat Simple_repeat 2 22 0 7 1225 434 252 38 19 chr9 83924120 83924225 -40151947 - PB1D9 SINE Alu -13 107 1 7 1225 533 277 22 7 chr9 83924881 83925019 -40151153 - B1F1 SINE Alu -9 140 1 7 1225 269 377 82 48 chr9 83925060 83925375 -40150797 + Tigger15a DNA TcMar 13 338 -377 7 1225 943 256 75 51 chr9 83927374 83927666 -40148506 + Tigger7 DNA MER2_type 9 307 -2184 7 1225 23 33 0 0 chr9 83928220 83928250 -40147922 + AT_rich Low_complexity Low_complexity 1 30 0 7 1225 452 303 65 13 chr9 83928301 83928455 -40147717 - RSINE1 SINE B4 -1 164 3 7 1225 183 139 0 0 chr9 83928661 83928697 -40147475 + (C)n Simple_repeat Simple_repeat 1 36 0 7 1225 204 255 63 81 chr9 83929786 83929897 -40146275 + MIRb SINE MIR 28 136 -132 7 1225 801 296 112 15 chr9 83930019 83930358 -40145814 - Tigger7 DNA MER2_type 0 2491 2120 7 1225 205 338 74 61 chr9 83931043 83931191 -40144981 - L2 LINE L2 -3250 169 20 7 1225 333 172 0 0 chr9 83932035 83932099 -40144073 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1225 180 111 0 0 chr9 83932221 83932248 -40143924 + (CAA)n Simple_repeat Simple_repeat 2 28 0 7 1225 217 348 80 0 chr9 83932455 83932593 -40143579 - L2a LINE L2 -2 3424 3276 7 1225 198 338 29 0 chr9 83932787 83932855 -40143317 - L2a LINE L2 -387 3032 2963 7 1225 588 29 0 0 chr9 83932926 83932996 -40143176 + (TC)n Simple_repeat Simple_repeat 2 71 0 7 1225 1023 0 72 0 chr9 83932996 83933162 -40143010 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 7 1225 303 284 156 7 chr9 83933167 83933302 -40142870 - HAL1-3A_ME LINE L1 -420 2438 2284 7 1225 434 33 17 0 chr9 83933302 83933362 -40142810 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 7 1225 383 264 35 0 chr9 83933541 83933628 -40142544 + PB1 SINE Alu 31 120 -7 7 1225 286 351 40 7 chr9 83934075 83934224 -40141948 - MER58B DNA MER1_type -2 339 186 7 1225 270 0 0 0 chr9 83934893 83934923 -40141249 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1225 211 219 0 0 chr9 83935391 83935432 -40140740 + CT-rich Low_complexity Low_complexity 3 43 0 7 1225 243 328 168 33 chr9 83936190 83936673 -40139499 - L2 LINE L2 -1079 2340 1793 7 1225 259 326 76 40 chr9 83937112 83937361 -40138811 - L1M5 LINE L1 -874 5272 5015 7 1225 657 0 0 0 chr9 83937468 83937541 -40138631 + (GGAGA)n Simple_repeat Simple_repeat 4 76 0 7 1225 287 292 135 0 chr9 83938903 83938992 -40137180 + MTEa LTR MaLR 43 143 -236 7 1225 189 0 0 0 chr9 83939028 83939049 -40137123 + (C)n Simple_repeat Simple_repeat 1 21 0 7 1225 711 116 0 0 chr9 83940181 83940293 -40135879 + (TG)n Simple_repeat Simple_repeat 1 112 0 7 1225 181 242 0 70 chr9 83941796 83941867 -40134305 + MIRb SINE MIR 12 77 -191 7 1225 1245 62 7 0 chr9 83943141 83943287 -40132885 - B1_Mus1 SINE Alu 0 148 2 7 1225 255 93 0 0 chr9 83943602 83943645 -40132527 + (TATG)n Simple_repeat Simple_repeat 2 44 0 7 1225 284 289 13 0 chr9 83944046 83944122 -40132050 - MER20 DNA MER1_type -12 207 131 7 1225 22 0 0 0 chr9 83946077 83946099 -40130073 + AT_rich Low_complexity Low_complexity 1 22 0 7 1225 514 300 120 25 chr9 83946127 83946411 -40129761 - ORR1E LTR MaLR -48 311 1 7 1225 288 0 0 0 chr9 83946746 83946778 -40129394 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1225 354 80 0 0 chr9 83947064 83947114 -40129058 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1225 514 238 65 52 chr9 83947138 83947293 -40128879 - B3A SINE B2 0 198 42 7 1225 337 261 143 52 chr9 83947533 83947603 -40128569 - MIRb SINE MIR 0 268 194 7 1225 5283 51 5 0 chr9 83947603 83948254 -40127918 - L1Md_F2 LINE L1 -1 6581 5928 7 1225 337 261 143 52 chr9 83948254 83948393 -40127779 - MIRb SINE MIR -75 193 40 7 1225 432 0 0 0 chr9 83948591 83948639 -40127533 + (TTA)n Simple_repeat Simple_repeat 2 49 0 7 1225 633 207 9 0 chr9 83948872 83948988 -40127184 - RSINE1 SINE B4 -45 120 4 7 1225 22 35 0 0 chr9 83949068 83949097 -40127075 + AT_rich Low_complexity Low_complexity 1 29 0 7 1225 186 71 0 0 chr9 83950385 83950413 -40125759 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 7 1225 510 17 0 0 chr9 83950416 83950475 -40125697 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1225 1255 148 42 5 chr9 83950808 83951025 -40125147 - URR1B DNA MER1_type 0 225 1 7 1225 279 0 0 0 chr9 83951973 83952004 -40124168 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1225 1107 57 0 7 chr9 83952468 83952609 -40123563 - B1_Mus2 SINE Alu -6 141 2 7 1225 1078 293 54 85 chr9 83953008 83953396 -40122776 - MTE2a LTR MaLR 0 379 4 7 1225 3148 165 17 31 chr9 83953514 83954020 -40122152 - RMER15 LTR ERVL -3 572 65 7 1225 918 0 0 0 chr9 83954020 83954122 -40122050 + (TTTCC)n Simple_repeat Simple_repeat 4 105 0 7 1225 3344 93 4 28 chr9 83954128 83954624 -40121548 - L1_Mus3 LINE L1 -4 6634 6151 7 1225 3148 165 17 31 chr9 83954624 83954690 -40121482 - RMER15 LTR ERVL -516 59 1 7 1225 3103 184 51 58 chr9 83954736 83955553 -40120619 - Lx9 LINE L1 -22 7622 6811 7 1225 185 354 45 15 chr9 83957132 83957198 -40118974 - L2b LINE L2 -317 3058 2991 7 1225 243 0 0 0 chr9 83957269 83957296 -40118876 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 7 1225 830 171 28 11 chr9 83957311 83957488 -40118684 - Lx2 LINE L1 -74 6923 6744 7 1225 225 119 0 0 chr9 83958061 83958103 -40118069 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 7 1225 378 0 0 0 chr9 83958491 83958533 -40117639 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1225 21 0 0 0 chr9 83965623 83965644 -40110528 + AT_rich Low_complexity Low_complexity 1 21 0 7 1225 24 32 0 0 chr9 83966808 83966839 -40109333 + AT_rich Low_complexity Low_complexity 1 31 0 7 1225 243 204 0 0 chr9 83966905 83966959 -40109213 + T-rich Low_complexity Low_complexity 1 54 0 7 1225 3554 13 2 0 chr9 83968012 83968407 -40107765 + MTA_Mm LTR MaLR 1 396 0 7 1225 453 344 29 65 chr9 83969172 83969207 -40106965 + MER44B DNA MER2_type 284 318 -232 7 1225 209 33 33 0 chr9 83969207 83969237 -40106935 + (TATAA)n Simple_repeat Simple_repeat 2 32 0 7 1225 453 344 29 65 chr9 83969237 83969478 -40106694 + MER44B DNA MER2_type 319 550 0 7 1225 855 159 7 0 chr9 83970540 83970685 -40105487 - URR1A DNA MER1_type 0 226 81 7 1225 361 294 145 52 chr9 83970751 83971020 -40105152 - MTEa LTR MaLR -66 313 20 7 1225 25 51 0 0 chr9 83971083 83971122 -40105050 + AT_rich Low_complexity Low_complexity 1 39 0 7 1225 206 143 47 16 chr9 83971131 83971195 -40104977 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 1225 733 271 65 0 chr9 83971231 83971430 -40104742 + B3 SINE B2 5 216 0 8 1225 337 270 22 11 chr9 83972243 83972333 -40103839 + RSINE1 SINE B4 11 101 -64 8 1225 22 0 0 0 chr9 83972516 83972538 -40103634 + AT_rich Low_complexity Low_complexity 1 22 0 8 1225 198 0 0 0 chr9 83972931 83972953 -40103219 + (CATCT)n Simple_repeat Simple_repeat 5 26 0 8 1225 241 255 0 0 chr9 83975003 83975054 -40101118 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1225 764 175 0 0 chr9 83975143 83975263 -40100909 + B1_Mus2 SINE Alu 22 141 -6 8 1225 573 188 7 14 chr9 83975266 83975412 -40100760 + GA-rich Low_complexity Low_complexity 3 147 0 8 1225 265 238 16 0 chr9 83977006 83977069 -40099103 + (TA)n Simple_repeat Simple_repeat 1 64 0 8 1225 262 320 95 8 chr9 83977126 83977252 -40098920 - Tigger11a DNA MER2_type -227 508 372 8 1225 189 0 0 0 chr9 83977559 83977580 -40098592 + (CTG)n Simple_repeat Simple_repeat 1 21 0 8 1225 241 211 100 50 chr9 83977841 83977941 -40098231 + L1MEf LINE L1 1354 1458 -4742 8 1225 1064 102 77 33 chr9 83978078 83978260 -40097912 - B2_Mm2 SINE B2 -5 190 1 8 1225 3578 164 126 71 chr9 83978264 83979112 -40097060 - RMER19B LTR ERVK -7 895 1 8 1225 1098 121 99 47 chr9 83979112 83979197 -40096975 - MurERV4_19-int LTR ERVK 0 5780 5671 8 1225 867 75 0 0 chr9 83979197 83979317 -40096855 - L1_Mus2 LINE L1 0 6566 6447 8 1225 1589 143 86 42 chr9 83979317 83979770 -40096402 - MurERV4_19-int LTR ERVK -110 5670 5171 8 1225 321 156 78 0 chr9 83980010 83980074 -40096098 + PB1D7 SINE Alu 52 120 0 8 1225 307 274 102 19 chr9 83980172 83980280 -40095892 + PB1D10 SINE Alu 1 117 0 8 1225 23 0 0 0 chr9 83980429 83980452 -40095720 + AT_rich Low_complexity Low_complexity 1 23 0 8 1225 1642 91 4 0 chr9 83981506 83981748 -40094424 - L1Md_F2 LINE L1 -431 6151 5909 8 1225 3415 46 0 5 chr9 83981748 83982166 -40094006 + L1Md_F2 LINE L1 6153 6568 -14 8 1225 1139 66 0 0 chr9 83982434 83982571 -40093601 + B1_Mm SINE Alu 1 137 -10 8 1225 212 0 36 0 chr9 83982572 83982600 -40093572 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1225 272 324 57 9 chr9 83982789 83982895 -40093277 - MIR SINE MIR -86 176 66 8 1225 258 32 0 0 chr9 83984853 83984884 -40091288 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1225 493 200 160 28 chr9 83986534 83986678 -40089494 - RSINE1 SINE B4 0 165 3 8 1225 459 292 104 17 chr9 83986982 83987212 -40088960 + MIR SINE MIR 12 261 -1 8 1225 216 0 0 0 chr9 83987948 83987972 -40088200 + (CAGCC)n Simple_repeat Simple_repeat 5 28 0 8 1225 21 0 0 0 chr9 83988755 83988776 -40087396 + AT_rich Low_complexity Low_complexity 1 21 0 8 1225 25 0 0 0 chr9 83988975 83989000 -40087172 + AT_rich Low_complexity Low_complexity 1 25 0 8 1225 205 176 0 0 chr9 83989461 83989495 -40086677 + (CATA)n Simple_repeat Simple_repeat 3 36 0 8 1225 24 67 0 0 chr9 83989668 83989713 -40086459 + AT_rich Low_complexity Low_complexity 1 45 0 8 1225 470 310 166 84 chr9 83991040 83991456 -40084716 - MLT1D LTR MaLR -1 504 55 8 1225 2850 12 3 0 chr9 83993390 83993711 -40082461 - RLTRETN_Mm LTR ERVK 0 322 1 8 1225 628 257 113 66 chr9 83994216 83994578 -40081594 - MTE2a LTR MaLR 0 379 1 8 1225 1023 246 300 81 chr9 83994578 83995357 -40080815 - MTE2a-int LTR MaLR -2 1578 309 8 1225 355 350 86 0 chr9 83995837 83995977 -40080195 - HAL1-3A_ME LINE L1 -421 2437 2286 8 1225 324 0 0 0 chr9 83995977 83996013 -40080159 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1225 234 333 65 50 chr9 83997499 83997638 -40078534 + MER5B DNA MER1_type 37 177 -1 8 1225 284 304 0 0 chr9 83997826 83997905 -40078267 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1225 486 241 0 0 chr9 83997917 83998083 -40078089 + (CA)n Simple_repeat Simple_repeat 1 166 0 8 1225 219 114 0 0 chr9 83998116 83998151 -40078021 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1225 2449 228 45 49 chr9 83998347 83999324 -40076848 - Lx7 LINE L1 -1596 6100 5128 8 1225 651 183 9 0 chr9 83999884 83999999 -40076173 - B3 SINE B2 -1 215 100 8 1225 456 250 10 10 chr9 84000000 84000097 -40076075 - B3 SINE B2 -118 98 2 1 1225 630 208 17 36 chr9 84000137 84000320 -40075852 - L1MD LINE L1 -442 5722 5543 2 1225 387 0 0 0 chr9 84000337 84000380 -40075792 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1225 242 260 120 78 chr9 84000422 84000614 -40075558 - L1MD LINE L1 -750 5396 5197 2 1225 411 21 0 0 chr9 84002041 84002089 -40074083 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1225 184 189 35 70 chr9 84002340 84002397 -40073775 + L3 LINE CR1 874 928 -3561 5 1225 266 333 0 13 chr9 84002830 84002909 -40073263 + C-rich Low_complexity Low_complexity 5 82 0 6 1225 180 122 39 39 chr9 84002923 84002974 -40073198 + CT-rich Low_complexity Low_complexity 4 54 0 7 1225 324 0 0 0 chr9 84003143 84003179 -40072993 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1225 203 333 0 0 chr9 84004708 84004768 -40071404 + (TATG)n Simple_repeat Simple_repeat 4 63 0 9 1225 25 0 0 0 chr9 84005416 84005441 -40070731 + AT_rich Low_complexity Low_complexity 1 25 0 1 1225 405 0 0 0 chr9 84007373 84007418 -40068754 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1225 645 118 0 25 chr9 84008889 84009011 -40067161 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 1 1225 231 36 0 0 chr9 84010792 84010820 -40065352 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1225 533 291 20 33 chr9 84012209 84012362 -40063810 + RSINE1 SINE B4 2 152 -13 1 1225 567 210 71 104 chr9 84013057 84013211 -40062961 + B1F SINE Alu 1 149 0 1 1225 426 69 0 0 chr9 84016520 84016578 -40059594 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1225 406 243 133 19 chr9 84016580 84016685 -40059487 - PB1D10 SINE Alu 0 117 1 1 1226 2655 165 42 58 chr9 84019540 84020087 -40056085 + Lx9 LINE L1 6532 7069 -575 1 1226 504 0 0 0 chr9 84020090 84020146 -40056026 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1226 517 158 79 0 chr9 84020151 84020265 -40055907 + Lx9 LINE L1 7520 7642 -2 1 1226 3477 214 89 32 chr9 84020335 84021261 -40054911 + Lx7 LINE L1 6719 7696 0 2 1226 894 82 0 0 chr9 84021535 84021657 -40054515 - B1_Mus1 SINE Alu -25 123 2 2 1226 1308 257 189 47 chr9 84021657 84022127 -40054045 + RMER15 LTR ERVL 29 565 -10 2 1226 1142 96 0 20 chr9 84022206 84022355 -40053817 + B1_Mus2 SINE Alu 2 147 0 2 1226 485 71 14 0 chr9 84022372 84022442 -40053730 + (GGA)n Simple_repeat Simple_repeat 2 72 0 2 1226 1540 0 0 12 chr9 84022442 84022694 -40053478 + (GAA)n Simple_repeat Simple_repeat 1 249 0 2 1226 429 20 0 0 chr9 84023279 84023329 -40052843 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1226 1496 185 116 0 chr9 84024392 84024684 -40051488 + ORR1D2 LTR MaLR 4 329 -41 2 1226 4649 10 0 0 chr9 84026002 84026484 -40049688 + LTRIS_Mm LTR ERV1 1 482 0 2 1226 279 79 0 0 chr9 84026484 84026522 -40049650 + (GTATG)n Simple_repeat Simple_repeat 3 40 0 2 1226 239 364 0 7 chr9 84026793 84026934 -40049238 + L1M5 LINE L1 5779 5918 -206 3 1226 889 57 205 0 chr9 84027920 84028042 -40048130 - B1_Mus1 SINE Alu 0 148 2 3 1226 21 0 0 0 chr9 84031098 84031119 -40045053 + AT_rich Low_complexity Low_complexity 1 21 0 3 1226 1021 105 12 0 chr9 84031846 84032008 -40044164 + (TTC)n Simple_repeat Simple_repeat 2 165 0 3 1226 615 237 0 0 chr9 84032015 84032129 -40044043 - B1_Mur1 SINE Alu -35 114 1 3 1226 341 131 16 0 chr9 84032304 84032365 -40043807 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 3 1226 298 0 0 45 chr9 84032702 84032746 -40043426 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1226 633 259 0 41 chr9 84032748 84032893 -40043279 - ID_B1 SINE B4 -1 223 85 3 1226 358 279 0 0 chr9 84033938 84034006 -40042166 - ID4_ SINE ID 0 83 16 3 1226 458 289 117 31 chr9 84034265 84034522 -40041650 - MER45B DNA Tip100 -3 1037 759 3 1226 12761 161 16 33 chr9 84034544 84036059 -40040113 + L1VL4 LINE L1 404 2288 -3589 4 1226 407 134 0 0 chr9 84036059 84036126 -40040046 - 4.5SRNA scRNA scRNA -25 69 3 4 1226 12761 161 16 33 chr9 84036126 84037918 -40038254 + L1VL4 LINE L1 2289 4521 -1356 4 1226 6799 96 41 2 chr9 84037907 84038860 -40037312 + L1_Mus4 LINE L1 5640 6629 -7 4 1226 474 18 0 0 chr9 84038862 84038917 -40037255 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1226 801 331 97 28 chr9 84039040 84039546 -40036626 - MER45B DNA Tip100 -407 633 93 3 1226 579 369 142 69 chr9 84039926 84040652 -40035520 - MTE-int LTR MaLR -46 1534 747 4 1226 793 167 242 11 chr9 84040652 84040834 -40035338 + URR1A DNA MER1_type 3 226 0 4 1226 579 373 149 65 chr9 84040834 84041523 -40034649 - MTE-int LTR MaLR -834 746 8 4 1226 25 31 0 0 chr9 84042400 84042432 -40033740 + AT_rich Low_complexity Low_complexity 1 32 0 4 1226 195 69 0 0 chr9 84042448 84042477 -40033695 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 1226 424 245 150 7 chr9 84042494 84042634 -40033538 - B3A SINE B2 -38 160 1 4 1226 1654 121 9 0 chr9 84043539 84043763 -40032409 - URR1A DNA MER1_type 0 226 1 4 1226 5152 57 2 2 chr9 84043788 84044388 -40031784 - L1_Mus1 LINE L1 -1 6566 5967 5 1226 4069 80 7 0 chr9 84044388 84044929 -40031243 + L1_Mm LINE L1 4972 5516 -367 5 1226 267 268 0 0 chr9 84045218 84045274 -40030898 - B3A SINE B2 -142 56 1 5 1226 1142 256 103 33 chr9 84045274 84045769 -40030403 - L1MA6 LINE L1 -469 5831 5298 5 1226 297 0 0 0 chr9 84045769 84045802 -40030370 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 5 1226 814 308 54 26 chr9 84045802 84046292 -40029880 - L1MA6 LINE L1 -843 5297 4744 5 1226 213 39 0 0 chr9 84046544 84046570 -40029602 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1226 927 126 0 0 chr9 84047636 84047795 -40028377 + (CA)n Simple_repeat Simple_repeat 1 159 0 5 1226 380 265 188 29 chr9 84047857 84048102 -40028070 - L1M3 LINE L1 -1056 5084 4801 5 1226 2664 52 28 3 chr9 84048110 84048436 -40027736 - L1_Mus1 LINE L1 0 6567 6234 5 1226 1314 40 0 0 chr9 84048436 84048588 -40027584 + L1_Mus1 LINE L1 6106 6257 -310 5 1226 390 279 68 31 chr9 84048580 84048772 -40027400 - L1M3 LINE L1 -1323 4817 4619 5 1226 21 71 0 0 chr9 84048774 84048816 -40027356 + AT_rich Low_complexity Low_complexity 1 42 0 5 1226 5752 119 14 16 chr9 84048821 84049690 -40026482 - Lx LINE L1 0 6654 5788 6 1226 326 23 0 23 chr9 84049690 84049734 -40026438 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1226 921 36 0 0 chr9 84049734 84049846 -40026326 - B1_Mus2 SINE Alu -10 137 26 6 1226 6458 138 31 2 chr9 84049846 84050875 -40025297 - L1_Mm LINE L1 -93 5790 4732 6 1226 32667 92 3 12 chr9 84050883 84055832 -40020340 - L1_Mus1 LINE L1 0 6567 1669 6 1226 1295 54 0 0 chr9 84055832 84055980 -40020192 - B1_Mus1 SINE Alu 0 148 1 6 1226 32667 132 3 59 chr9 84055980 84057045 -40019127 - L1_Mus1 LINE L1 -4215 1668 675 6 1226 12526 141 16 18 chr9 84057122 84058178 -40017994 - L1_Mm LINE L1 -1148 4735 3691 6 1226 3254 91 28 11 chr9 84058178 84058645 -40017527 - MT2C_Mm LTR ERVL 0 475 1 6 1226 12526 141 16 18 chr9 84058645 84059935 -40016237 - L1_Mm LINE L1 -2193 3690 2394 6 1226 2928 26 0 14 chr9 84059966 84060320 -40015852 + L1Md_F2 LINE L1 6234 6582 0 6 1226 567 252 48 9 chr9 84060320 84060548 -40015624 - L1M3 LINE L1 -1551 4589 4353 5 1226 189 107 0 0 chr9 84060572 84060600 -40015572 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1226 270 290 23 63 chr9 84060603 84060824 -40015348 - L1M3 LINE L1 -2098 4045 3834 5 1226 289 316 13 13 chr9 84060827 84060904 -40015268 - ID4_ SINE ID -4 79 3 6 1226 1240 278 91 19 chr9 84060909 84061667 -40014505 - L1M3 LINE L1 -2293 3847 3035 5 1226 7105 66 10 10 chr9 84061681 84062659 -40013513 - L1_Mus1 LINE L1 -2 6565 5588 7 1226 337 216 56 21 chr9 84062958 84063100 -40013072 - L1M3 LINE L1 -3195 2945 2799 5 1226 740 249 4 49 chr9 84063121 84063387 -40012785 + Lx9 LINE L1 4160 4413 -1434 7 1226 4419 65 0 12 chr9 84063388 84063960 -40012212 + L1_Mus1 LINE L1 6002 6566 -1 7 1226 3725 121 24 7 chr9 84063983 84064572 -40011600 + Lx2 LINE L1 6336 6934 -63 7 1226 4208 229 54 27 chr9 84064584 84065937 -40010235 + Lx9 LINE L1 4556 5976 -1668 7 1226 474 33 0 0 chr9 84065937 84065997 -40010175 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1226 3249 284 103 61 chr9 84065997 84067561 -40008611 + Lx9 LINE L1 5977 7619 -25 7 1226 227 167 56 0 chr9 84067604 84067658 -40008514 - L1M3 LINE L1 -3956 2184 2128 5 1226 762 41 0 0 chr9 84067729 84067827 -40008345 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 7 1226 264 314 124 15 chr9 84068936 84069195 -40006977 + L1MA6 LINE L1 5978 6264 -36 7 1226 258 176 0 0 chr9 84069686 84069737 -40006435 + (ATG)n Simple_repeat Simple_repeat 1 51 0 7 1226 477 0 0 0 chr9 84070102 84070155 -40006017 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1226 21 0 0 0 chr9 84071242 84071263 -40004909 + AT_rich Low_complexity Low_complexity 1 21 0 7 1226 289 279 13 84 chr9 84071279 84071506 -40004666 + L1MB3 LINE L1 5755 5965 -218 8 1226 2258 96 14 11 chr9 84073353 84073700 -40002472 + L1_Mur1 LINE L1 4847 5194 -692 8 1226 599 280 18 7 chr9 84073700 84073984 -40002188 - L1M4 LINE L1 -3109 3037 2751 8 1226 211 149 69 28 chr9 84074248 84074393 -40001779 + (TTATA)n Simple_repeat Simple_repeat 3 153 0 8 1226 26 30 0 0 chr9 84074393 84074426 -40001746 + AT_rich Low_complexity Low_complexity 1 33 0 8 1226 933 265 17 53 chr9 84074532 84074887 -40001285 - Lx9 LINE L1 -538 7106 6765 8 1226 252 0 0 0 chr9 84074989 84075017 -40001155 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1226 1188 140 85 19 chr9 84076928 84077139 -39999033 + URR1A DNA MER1_type 1 225 -1 8 1226 21 0 0 0 chr9 84078245 84078266 -39997906 + AT_rich Low_complexity Low_complexity 1 21 0 8 1226 310 259 214 14 chr9 84078512 84078657 -39997515 + MLT1J LTR MaLR 8 181 -331 8 1226 482 235 9 9 chr9 84078876 84078992 -39997180 + PB1D10 SINE Alu 1 116 -1 9 1226 208 191 21 0 chr9 84079372 84079419 -39996753 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 1226 258 220 0 0 chr9 84080421 84080471 -39995701 - ORR1D1 LTR MaLR -1 373 324 9 1226 480 330 70 21 chr9 84080823 84081009 -39995163 + B4A SINE B4 90 284 -8 9 1226 1506 208 7 7 chr9 84081181 84081452 -39994720 + MTD LTR MaLR 19 289 -130 9 1226 442 176 152 67 chr9 84081809 84081961 -39994211 + ORR1D1 LTR MaLR 213 381 -3 9 1226 738 219 6 52 chr9 84081961 84082134 -39994038 + U1 snRNA snRNA 1 165 0 9 1226 211 167 42 0 chr9 84082147 84082195 -39993977 + GA-rich Low_complexity Low_complexity 3 52 0 9 1226 207 0 0 0 chr9 84083899 84083922 -39992250 + (TCTG)n Simple_repeat Simple_repeat 3 25 0 9 1226 204 125 0 0 chr9 84083935 84083967 -39992205 + (CAT)n Simple_repeat Simple_repeat 2 33 0 9 1226 512 89 13 0 chr9 84083973 84084052 -39992120 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 1 1226 1288 108 43 0 chr9 84084432 84084618 -39991554 - B2_Mm2 SINE B2 0 195 2 1 1226 1208 288 103 25 chr9 84084884 84085493 -39990679 - L1MA4 LINE L1 -316 5984 5328 1 1226 588 264 58 0 chr9 84085690 84085811 -39990361 - B3A SINE B2 -69 129 2 1 1226 478 177 211 9 chr9 84086243 84086357 -39989815 + URR1A DNA MER1_type 1 137 -89 1 1226 1971 224 20 79 chr9 84086383 84086937 -39989235 - RLTR20B3 LTR ERVK -56 521 1 1 1226 685 142 0 0 chr9 84086937 84087042 -39989130 + URR1A DNA MER1_type 121 225 -1 1 1226 1024 295 8 19 chr9 84087202 84087468 -39988704 + B4 SINE B4 22 284 -8 1 1226 653 284 35 35 chr9 84087524 84087721 -39988451 - B3A SINE B2 0 198 2 1 1226 1833 200 35 29 chr9 84089734 84090110 -39986062 - ORR1C1 LTR MaLR 0 378 1 1 1226 366 305 138 22 chr9 84090117 84090708 -39985464 + L1MA9 LINE L1 5401 6078 -90 1 1226 312 298 0 0 chr9 84091889 84091983 -39984189 + L2c LINE L2 2018 2111 -1308 1 1226 228 273 28 66 chr9 84092491 84092597 -39983575 - MTEb LTR MaLR 0 379 278 1 1226 489 173 38 9 chr9 84092724 84092829 -39983343 - MTEa LTR MaLR 0 379 272 1 1226 252 344 119 61 chr9 84093317 84093627 -39982545 + L2c LINE L2 3054 3381 -6 1 1226 206 343 69 0 chr9 84094964 84095066 -39981106 - MIRb SINE MIR -62 206 98 1 1226 621 0 0 0 chr9 84095153 84095222 -39980950 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1 1226 1042 99 0 0 chr9 84095222 84095364 -39980808 - B1_Mus1 SINE Alu -6 142 1 1 1226 231 316 18 101 chr9 84097040 84097149 -39979023 + PB1D10 SINE Alu 13 112 -5 1 1226 500 286 5 21 chr9 84097160 84097349 -39978823 + L1MA9 LINE L1 6119 6304 -8 1 1226 782 132 0 7 chr9 84097350 84097445 -39978727 + (GAA)n Simple_repeat Simple_repeat 2 96 0 1 1226 1367 45 11 0 chr9 84097445 84097623 -39978549 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1226 782 132 0 7 chr9 84097623 84097664 -39978508 + (GAA)n Simple_repeat Simple_repeat 1 41 0 1 1226 547 115 11 0 chr9 84098396 84098483 -39977689 + Lx4A LINE L1 6319 6406 -652 1 1226 364 286 104 22 chr9 84098493 84098675 -39977497 + Lx8 LINE L1 7059 7255 -218 1 1226 343 205 49 41 chr9 84098984 84099106 -39977066 - Lx5 LINE L1 -3 7047 6925 1 1226 2534 149 38 11 chr9 84099609 84100058 -39976114 + Lx4A LINE L1 6540 7000 -58 1 1226 486 266 118 66 chr9 84100074 84100499 -39975673 - L1M5 LINE L1 -2887 3259 2807 1 1226 317 296 122 27 chr9 84100925 84101147 -39975025 - L1MC LINE L1 -3630 2516 2274 1 1226 17708 62 27 31 chr9 84101242 84101345 -39974827 - MusHAL1 LINE L1 -8 3345 3276 1 1226 4573 30 0 2 chr9 84101345 84101877 -39974295 - L1Md_F2 LINE L1 -14 6568 6038 1 1226 17708 62 27 31 chr9 84101877 84102553 -39973619 - MusHAL1 LINE L1 -78 3275 2600 1 1226 342 0 0 0 chr9 84102553 84102591 -39973581 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1226 1197 61 0 0 chr9 84102596 84102743 -39973429 - B1_Mm SINE Alu 0 147 1 1 1226 17708 68 21 23 chr9 84102743 84105305 -39970867 - MusHAL1 LINE L1 -754 2599 8 1 1226 1621 44 0 5 chr9 84105305 84105510 -39970662 - MTB LTR MaLR -15 385 182 1 1226 7686 38 0 0 chr9 84105513 84106820 -39969352 - L1Md_T LINE L1 0 6582 5276 1 1226 1298 108 0 5 chr9 84106820 84107007 -39969165 - MTB LTR MaLR -210 186 1 1 1226 1098 139 0 0 chr9 84107007 84107172 -39969000 - L1VL4 LINE L1 -6109 193 29 1 1226 22 56 0 0 chr9 84107209 84107245 -39968927 + AT_rich Low_complexity Low_complexity 1 36 0 1 1226 424 349 55 84 chr9 84107479 84107789 -39968383 + L1MEg LINE L1 2 302 -5782 1 1226 907 89 13 0 chr9 84108025 84108182 -39967990 + (TCTA)n Simple_repeat Simple_repeat 2 160 0 1 1226 729 250 65 91 chr9 84108219 84108622 -39967550 - MT2B LTR ERVL -113 488 1 1 1226 513 0 0 0 chr9 84108660 84108717 -39967455 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 1 1226 6166 109 53 5 chr9 84108717 84109690 -39966482 - Lx3A LINE L1 -11 6970 5951 1 1226 1098 175 101 30 chr9 84109775 84110077 -39966095 - IAPEY3_LTR LTR ERVK -2 388 1 1 1226 338 331 13 46 chr9 84110077 84110220 -39965952 + MLT1C LTR MaLR 330 467 0 1 1226 189 348 43 0 chr9 84110257 84110326 -39965846 + MIRb SINE MIR 180 251 -17 1 1226 18863 24 0 0 chr9 84110574 84113564 -39962608 - L1Md_T LINE L1 0 6585 3596 1 1226 2880 33 0 3 chr9 84113564 84113902 -39962270 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1226 8977 29 2 5 chr9 84113902 84115003 -39961169 - IAPEz-int LTR ERVK 0 6481 5385 1 1226 14052 37 58 14 chr9 84114997 84116867 -39959305 - IAPEz-int LTR ERVK -4523 1958 8 1 1226 2880 33 0 3 chr9 84116867 84117205 -39958967 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1226 17100 60 3 11 chr9 84117205 84118353 -39957819 - L1Md_T LINE L1 -2285 3601 2457 1 1226 1291 43 0 0 chr9 84118353 84118517 -39957655 + L1Md_A LINE L1 6417 6580 -2 1 1226 17100 55 2 14 chr9 84118517 84120596 -39955576 - L1Md_T LINE L1 -3430 2456 311 1 1226 324 0 0 0 chr9 84120897 84120933 -39955239 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1226 316 314 19 28 chr9 84120988 84121096 -39955076 - MLT1A1 LTR MaLR -274 134 28 1 1226 1275 204 191 22 chr9 84122388 84122708 -39953464 - ORR1D1 LTR MaLR 0 374 1 1 1226 5669 234 62 18 chr9 84122708 84122930 -39953242 - ORR1D1-int LTR MaLR 0 1370 1152 1 1226 2077 182 60 5 chr9 84122930 84123328 -39952844 - MTC LTR MaLR -1 420 1 1 1226 5669 234 62 18 chr9 84123328 84124418 -39951754 - ORR1D1-int LTR MaLR -219 1151 1 1 1226 1001 224 114 136 chr9 84124418 84124770 -39951402 - ORR1D1 LTR MaLR 0 374 31 1 1226 686 283 48 11 chr9 84124813 84125002 -39951170 - B3A SINE B2 -2 196 1 1 1226 708 221 46 13 chr9 84126096 84126247 -39949925 - RSINE1 SINE B4 -8 157 2 1 1226 719 138 0 110 chr9 84129289 84129331 -39946841 + B3 SINE B2 1 35 -181 1 1226 1151 122 55 0 chr9 84129331 84129512 -39946660 + B2_Mm2 SINE B2 1 191 -4 1 1226 719 138 0 110 chr9 84129512 84129615 -39946557 + B3 SINE B2 36 130 -86 1 1226 342 152 0 0 chr9 84129769 84129828 -39946344 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1226 234 278 0 0 chr9 84131111 84131165 -39945007 + L2b LINE L2 3320 3373 -2 1 1226 294 335 32 26 chr9 84131203 84131359 -39944813 + MLT2B1 LTR ERVL 1 157 -363 1 1226 357 285 181 12 chr9 84132114 84132274 -39943898 + MER20 DNA MER1_type 11 197 -22 1 1226 563 280 226 28 chr9 84132839 84132926 -39943246 + L1MC1 LINE L1 5299 5389 -944 1 1226 3518 71 15 0 chr9 84132926 84133388 -39942784 + L1_Mus3 LINE L1 6170 6638 0 1 1226 563 280 226 28 chr9 84133388 84133880 -39942292 + L1MC1 LINE L1 5390 5993 -340 1 1226 432 0 0 0 chr9 84135384 84135432 -39940740 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1226 284 0 28 0 chr9 84135911 84135947 -39940225 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1 1226 401 290 197 9 chr9 84136124 84136347 -39939825 + RMER15 LTR ERVL 296 560 -15 1 1226 519 17 0 0 chr9 84138396 84138456 -39937716 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1226 865 184 0 0 chr9 84138456 84138603 -39937569 - B2_Mm2 SINE B2 -37 158 12 1 1226 969 189 49 19 chr9 84139308 84139572 -39936600 + Lx9 LINE L1 7366 7637 -7 1 1226 23 0 0 0 chr9 84139576 84139599 -39936573 + AT_rich Low_complexity Low_complexity 1 23 0 1 1226 1107 89 0 16 chr9 84140455 84140637 -39935535 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 1 1226 4749 99 42 6 chr9 84141034 84141764 -39934408 + Lx3A LINE L1 6032 6788 -193 1 1226 245 333 79 0 chr9 84141892 84142018 -39934154 - L1ME3 LINE L1 -32 6130 5995 1 1226 22 0 0 0 chr9 84142786 84142808 -39933364 + AT_rich Low_complexity Low_complexity 1 22 0 1 1226 227 122 0 20 chr9 84143174 84143224 -39932948 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1226 237 65 0 0 chr9 84143448 84143479 -39932693 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1226 27 29 0 0 chr9 84143838 84143872 -39932300 + AT_rich Low_complexity Low_complexity 1 34 0 1 1226 710 213 94 20 chr9 84143872 84144073 -39932099 - B3 SINE B2 0 216 1 1 1226 367 263 18 6 chr9 84144256 84144353 -39931819 - PB1D10 SINE Alu -13 104 10 1 1226 1082 283 59 12 chr9 84144789 84145111 -39931061 + MTEb LTR MaLR 1 337 -42 1 1226 253 365 43 9 chr9 84145309 84145425 -39930747 + LTR16A LTR ERVL 1 120 -331 1 1226 791 261 14 32 chr9 84147452 84147670 -39928502 + B3 SINE B2 2 215 -1 1 1226 279 0 0 0 chr9 84147932 84147963 -39928209 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1226 294 261 34 11 chr9 84147971 84148060 -39928112 - MIR SINE MIR -74 188 98 1 1227 304 330 102 17 chr9 84148795 84148971 -39927201 + MIR SINE MIR 3 193 -69 1 1227 463 303 129 29 chr9 84149763 84150004 -39926168 + B4 SINE B4 1 265 -27 1 1227 597 324 51 4 chr9 84150806 84151060 -39925112 - LTR90B LTR LTR -390 406 141 1 1227 194 252 13 22 chr9 84151905 84152141 -39924031 + CT-rich Low_complexity Low_complexity 1 233 0 1 1227 22 35 0 0 chr9 84153105 84153134 -39923038 + AT_rich Low_complexity Low_complexity 1 29 0 1 1227 438 323 0 8 chr9 84153875 84154003 -39922169 + ID_B1 SINE B4 82 208 -16 1 1227 400 276 25 82 chr9 84154003 84154033 -39922139 + B1F2 SINE Alu 1 149 0 1 1227 575 306 87 73 chr9 84154141 84154645 -39921527 + RLTR11A2 LTR ERVK 1 511 -16 1 1227 868 18 77 6 chr9 84154896 84155064 -39921108 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1227 913 161 3 18 chr9 84156807 84157092 -39919080 + CT-rich Low_complexity Low_complexity 1 280 0 1 1227 1055 51 7 0 chr9 84157243 84157410 -39918762 - L1Md_F2 LINE L1 0 6582 6425 1 1227 1862 65 0 8 chr9 84157410 84157659 -39918513 + L1Md_F2 LINE L1 6135 6381 -201 1 1227 3220 144 70 26 chr9 84157803 84158464 -39917708 - RMER6C LTR ERVK 0 690 1 1 1227 276 296 37 0 chr9 84159139 84159220 -39916952 + PB1D7 SINE Alu 35 118 -2 1 1227 802 270 110 31 chr9 84159630 84160020 -39916152 - Arthur1B DNA Tip100 -5 1220 800 1 1227 239 362 115 10 chr9 84160040 84160249 -39915923 - Arthur1B DNA Tip100 -457 768 538 1 1227 436 320 91 15 chr9 84160281 84160478 -39915694 - Arthur1B DNA Tip100 -1013 212 1 1 1227 240 86 0 0 chr9 84161409 84161444 -39914728 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1 1227 304 308 30 30 chr9 84161618 84161752 -39914420 - L1M5 LINE L1 -2273 3873 3740 1 1227 204 40 0 0 chr9 84161943 84161968 -39914204 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1227 291 104 0 0 chr9 84162091 84162139 -39914033 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 1227 241 309 94 16 chr9 84162423 84162551 -39913621 + Lx8 LINE L1 7264 7401 -72 1 1227 247 85 21 21 chr9 84162609 84162657 -39913515 + (TTAA)n Simple_repeat Simple_repeat 1 48 0 2 1227 666 47 0 0 chr9 84162716 84162802 -39913370 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 2 1227 2454 188 35 8 chr9 84162811 84163326 -39912846 + Lx9 LINE L1 7114 7642 -2 2 1227 780 283 72 22 chr9 84163354 84163632 -39912540 - MLT1B LTR MaLR -8 382 91 2 1227 421 344 20 5 chr9 84163671 84163867 -39912305 - Lx8 LINE L1 -40 7433 7235 2 1227 337 299 85 16 chr9 84163867 84163996 -39912176 - MLT1B LTR MaLR -252 138 1 2 1227 1062 65 0 0 chr9 84165061 84165200 -39910972 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 2 1227 1492 133 54 15 chr9 84165241 84165500 -39910672 - Lx LINE L1 -16 6638 6370 2 1227 5584 94 1 2 chr9 84165501 84166495 -39909677 + Lx LINE L1 5386 6377 -277 2 1227 367 309 18 0 chr9 84166580 84166690 -39909482 - MTEb LTR MaLR 0 379 268 2 1227 306 39 58 0 chr9 84166736 84166788 -39909384 + (CAA)n Simple_repeat Simple_repeat 2 56 0 2 1227 42 48 0 0 chr9 84167370 84167433 -39908739 + AT_rich Low_complexity Low_complexity 1 63 0 2 1227 284 180 82 0 chr9 84168913 84168974 -39907198 - ORR1D1 LTR MaLR 0 370 305 2 1227 1266 90 0 0 chr9 84168975 84169153 -39907019 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1227 237 196 36 0 chr9 84169156 84169212 -39906960 + GA-rich Low_complexity Low_complexity 2 59 0 2 1227 255 125 0 0 chr9 84169217 84169257 -39906915 + (CCA)n Simple_repeat Simple_repeat 1 40 0 2 1227 776 230 170 31 chr9 84169260 84169489 -39906683 - ORR1D1 LTR MaLR -66 308 48 2 1227 1959 155 38 5 chr9 84169490 84169834 -39906338 - ORR1A2 LTR MaLR -3 371 6 2 1227 212 134 28 56 chr9 84169861 84169876 -39906296 + A-rich Low_complexity Low_complexity 2 16 0 2 1227 510 226 194 0 chr9 84169876 84170000 -39906172 + B1F1 SINE Alu 1 148 -1 2 1227 212 134 28 56 chr9 84170000 84170055 -39906117 + A-rich Low_complexity Low_complexity 17 70 0 2 1227 403 298 3 27 chr9 84170253 84170379 -39905793 - L2a LINE L2 -2 3424 3248 2 1227 1443 45 0 0 chr9 84171130 84171309 -39904863 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 2 1227 819 31 0 0 chr9 84172259 84172357 -39903815 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 2 1227 1058 189 65 19 chr9 84174320 84174536 -39901636 - URR1A DNA MER1_type 0 226 1 2 1227 252 0 0 0 chr9 84174910 84174938 -39901234 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1227 212 360 0 0 chr9 84176055 84176140 -39900032 + MIRb SINE MIR 21 105 -171 2 1227 474 306 69 69 chr9 84176230 84176504 -39899668 + B4A SINE B4 1 274 -18 2 1227 285 257 59 0 chr9 84176540 84176641 -39899531 + (CATG)n Simple_repeat Simple_repeat 2 108 0 2 1227 497 165 10 0 chr9 84176663 84176760 -39899412 + (CA)n Simple_repeat Simple_repeat 1 98 0 2 1227 310 282 11 45 chr9 84176786 84176875 -39899297 + RSINE1 SINE B4 44 129 -36 2 1227 22 35 0 0 chr9 84176916 84176945 -39899227 + AT_rich Low_complexity Low_complexity 1 29 0 2 1227 1827 138 75 104 chr9 84176972 84177384 -39898788 + RLTR9D LTR ERVK 1 400 -3 2 1227 273 340 48 121 chr9 84177391 84177763 -39898409 + LTR40b LTR ERVL 113 457 -5 2 1227 345 347 65 62 chr9 84180316 84180544 -39895628 - MLT-int LTR MaLR -1157 578 351 2 1227 194 0 0 37 chr9 84180544 84180571 -39895601 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1227 345 347 65 62 chr9 84180571 84180680 -39895492 - MLT-int LTR MaLR -1385 350 241 2 1227 865 264 102 23 chr9 84180737 84180993 -39895179 - B4A SINE B4 -12 280 5 2 1227 275 365 26 92 chr9 84180996 84181066 -39895106 - MLT-int LTR MaLR -1489 246 197 2 1227 1449 272 22 24 chr9 84181066 84181435 -39894737 + ORR1D2 LTR MaLR 1 368 -2 2 1227 275 365 26 92 chr9 84181435 84181593 -39894579 - MLT-int LTR MaLR -1539 196 34 2 1227 23393 72 2 11 chr9 84182437 84185833 -39890339 - L1Md_F2 LINE L1 0 6582 3229 2 1227 2688 141 25 82 chr9 84185833 84186344 -39889828 + RLTR45 LTR ERVK 1 482 0 2 1227 23393 75 2 14 chr9 84186344 84186774 -39889398 - L1Md_F2 LINE L1 -2655 3228 2796 2 1227 4272 147 52 40 chr9 84186774 84188222 -39887950 - L1Md_F2 LINE L1 -4212 1671 218 2 1227 1374 253 44 26 chr9 84188232 84188621 -39887551 - MTD LTR MaLR -14 405 10 2 1227 656 56 11 0 chr9 84188856 84188945 -39887227 + (TC)n Simple_repeat Simple_repeat 1 90 0 2 1227 204 309 185 51 chr9 84190255 84190412 -39885760 + MIRb SINE MIR 28 205 -63 2 1227 224 300 117 51 chr9 84190409 84190546 -39885626 + MIR SINE MIR 5 150 -112 2 1227 629 205 51 36 chr9 84190567 84190704 -39885468 - B1_Mur3 SINE Alu -8 141 3 2 1227 205 171 0 0 chr9 84190723 84190758 -39885414 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 2 1227 710 276 126 4 chr9 84190876 84191131 -39885041 + B4A SINE B4 1 286 -6 2 1227 8401 128 31 12 chr9 84191703 84192901 -39883271 + Lx4B LINE L1 5126 6330 -728 2 1227 2223 123 0 61 chr9 84192901 84193246 -39882926 - ORR1A3 LTR MaLR -2 324 1 2 1227 8401 141 33 31 chr9 84193246 84193951 -39882221 + Lx4B LINE L1 6331 7058 0 2 1227 297 183 0 0 chr9 84193951 84194011 -39882161 + GA-rich Low_complexity Low_complexity 1 60 0 2 1227 388 150 36 36 chr9 84194086 84194169 -39882003 + ORR1B1 LTR MaLR 41 123 -271 2 1227 417 95 0 0 chr9 84194169 84194232 -39881940 + L1_Mus2 LINE L1 6504 6566 0 2 1227 1535 171 4 19 chr9 84194273 84194536 -39881636 + ORR1A4 LTR MaLR 63 321 -8 2 1227 2759 162 90 6 chr9 84196735 84197255 -39878917 - RMER15 LTR ERVL 0 575 12 2 1227 631 233 141 25 chr9 84198112 84198275 -39877897 - B3A SINE B2 -16 182 1 2 1227 1472 82 11 0 chr9 84198510 84198693 -39877479 + B2_Mm1t SINE B2 2 186 -7 2 1227 4653 48 7 0 chr9 84198698 84199235 -39876937 + L1Md_F3 LINE L1 6031 6571 -13 2 1227 701 321 126 26 chr9 84199236 84199776 -39876396 - L1ME2 LINE L1 -245 5919 5326 2 1227 269 301 112 82 chr9 84200172 84200306 -39875866 - MER68 LTR ERVL -219 344 207 2 1227 200 384 0 0 chr9 84200479 84200565 -39875607 + CT-rich Low_complexity Low_complexity 1 86 0 2 1227 271 319 159 0 chr9 84201018 84201131 -39875041 - L4 LINE RTE -416 1613 1483 2 1227 488 212 100 37 chr9 84201133 84201292 -39874880 - MTD LTR MaLR -14 405 165 2 1227 639 0 0 0 chr9 84201292 84201363 -39874809 + (TC)n Simple_repeat Simple_repeat 1 71 0 2 1227 284 0 28 0 chr9 84201363 84201398 -39874774 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1227 633 281 174 29 chr9 84201398 84201583 -39874589 - MTD LTR MaLR -230 189 5 2 1227 280 329 56 43 chr9 84201602 84201764 -39874408 - L4 LINE RTE -565 1464 1301 2 1227 595 201 46 23 chr9 84202832 84202999 -39873173 - L1M4 LINE L1 -687 5491 5324 2 1227 430 105 0 0 chr9 84203661 84203718 -39872454 + B2_Mm2 SINE B2 2 58 -137 2 1227 4186 96 32 14 chr9 84203718 84203736 -39872436 - Lx LINE L1 -3 6651 6640 2 1227 234 0 0 0 chr9 84203736 84203762 -39872410 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2 1227 4186 96 32 14 chr9 84203762 84204306 -39871866 - Lx LINE L1 -15 6639 6079 2 1227 360 0 0 0 chr9 84205025 84205065 -39871107 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1227 572 288 241 9 chr9 84205065 84205415 -39870757 - Lx8 LINE L1 -370 5930 5494 2 1227 500 255 153 31 chr9 84205484 84205729 -39870443 + L1MB8 LINE L1 5900 6172 -6 2 1227 727 329 67 74 chr9 84206321 84206814 -39869358 - MLT1F-int LTR MaLR -278 1211 665 2 1227 924 169 159 0 chr9 84206834 84207029 -39869143 + URR1A DNA MER1_type 1 226 0 2 1227 260 114 0 0 chr9 84207060 84207095 -39869077 - L1_Mus2 LINE L1 -113 6453 6419 2 1227 1343 159 31 119 chr9 84207117 84207496 -39868676 - RMER17D2 LTR ERVK -2 807 468 2 1227 931 114 23 6 chr9 84207496 84207672 -39868500 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 1227 1343 159 31 119 chr9 84207672 84207705 -39868467 - RMER17D2 LTR ERVK -342 467 432 2 1227 2814 47 3 6 chr9 84207707 84208051 -39868121 - L1_Mus2 LINE L1 -138 6428 6086 2 1227 691 126 16 8 chr9 84208051 84208179 -39867993 + L1_Mus3 LINE L1 6502 6630 -8 2 1227 453 278 77 67 chr9 84208322 84208607 -39867565 + RLTR19-int LTR ERVK 3394 3681 -2456 2 1227 21 36 0 0 chr9 84208607 84208635 -39867537 + AT_rich Low_complexity Low_complexity 1 28 0 2 1227 296 243 318 5 chr9 84208932 84209143 -39867029 - B4A SINE B4 -15 277 1 2 1227 240 352 98 11 chr9 84209157 84209249 -39866923 - PB1D10 SINE Alu -17 100 1 2 1227 7136 197 50 15 chr9 84209324 84211074 -39865098 - Lx7 LINE L1 -505 7191 5372 2 1227 1224 76 0 0 chr9 84211198 84211343 -39864829 + B1_Mus1 SINE Alu 1 145 -3 2 1227 283 337 28 65 chr9 84212241 84212349 -39863823 - B4 SINE B4 0 292 189 2 1227 245 271 14 0 chr9 84212372 84212442 -39863730 - B4 SINE B4 -219 73 3 2 1227 304 335 90 62 chr9 84213681 84214146 -39862026 - MARNA DNA Mariner -55 531 54 2 1227 203 0 37 0 chr9 84214199 84214226 -39861946 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 1227 369 109 0 0 chr9 84214673 84214728 -39861444 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2 1227 305 351 67 13 chr9 84216074 84216224 -39859948 + RSINE1 SINE B4 8 165 0 2 1227 37 52 0 0 chr9 84216276 84216334 -39859838 + AT_rich Low_complexity Low_complexity 1 58 0 2 1227 22 35 0 0 chr9 84216492 84216521 -39859651 + AT_rich Low_complexity Low_complexity 1 29 0 2 1227 276 289 117 37 chr9 84216959 84217121 -39859051 - MLT1L LTR MaLR -4 606 432 2 1227 231 290 188 47 chr9 84218122 84218314 -39857858 - L2a LINE L2 -159 3267 3049 2 1227 964 297 32 101 chr9 84218439 84218844 -39857328 + MTE2a LTR MaLR 3 379 0 2 1227 196 271 68 0 chr9 84218973 84219032 -39857140 - MIRb SINE MIR -6 262 200 2 1227 624 331 66 59 chr9 84219045 84219331 -39856841 - B4 SINE B4 -4 288 1 2 1227 890 296 103 21 chr9 84220509 84220654 -39855518 - L1MB7 LINE L1 -2 6178 6011 2 1227 1667 53 0 0 chr9 84220654 84220843 -39855329 + B2_Mm1t SINE B2 2 190 -3 2 1227 890 286 90 9 chr9 84220843 84221235 -39854937 - L1MB7 LINE L1 -174 6010 5597 2 1227 31 26 0 0 chr9 84221242 84221280 -39854892 + AT_rich Low_complexity Low_complexity 1 38 0 2 1227 1766 167 9 15 chr9 84221280 84221614 -39854558 - Lx9 LINE L1 -561 7083 6752 2 1227 7608 88 8 0 chr9 84221615 84223112 -39853060 + L1_Mus1 LINE L1 5057 6565 -2 2 1227 21 0 0 0 chr9 84223112 84223133 -39853039 + AT_rich Low_complexity Low_complexity 1 21 0 2 1227 556 165 117 0 chr9 84223133 84223236 -39852936 - Lx9 LINE L1 -879 6765 6651 2 1227 268 376 58 29 chr9 84223237 84223374 -39852798 - RSINE1 SINE B4 -10 155 15 2 1227 470 277 69 112 chr9 84223402 84223634 -39852538 - MTEb LTR MaLR -2 377 156 3 1227 25 0 0 0 chr9 84223739 84223764 -39852408 + AT_rich Low_complexity Low_complexity 1 25 0 3 1227 413 241 250 0 chr9 84223931 84224043 -39852129 + MTD LTR MaLR 228 367 -52 3 1227 287 248 90 30 chr9 84224048 84224181 -39851991 - Lx6 LINE L1 -5 7455 7315 3 1227 437 266 76 53 chr9 84224230 84224492 -39851680 + Lx7 LINE L1 5922 6189 -1507 3 1227 231 114 0 0 chr9 84224492 84224527 -39851645 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1227 240 210 32 16 chr9 84224528 84224591 -39851581 + Lx7 LINE L1 6176 6239 -1457 3 1227 321 89 0 0 chr9 84224655 84224700 -39851472 + (TTA)n Simple_repeat Simple_repeat 3 47 0 3 1227 246 243 68 0 chr9 84224706 84224780 -39851392 - ID4 SINE ID -3 80 2 3 1227 279 183 24 12 chr9 84225520 84225603 -39850569 + CT-rich Low_complexity Low_complexity 4 87 0 3 1227 270 186 23 0 chr9 84225653 84225696 -39850476 - B1F SINE Alu -100 49 6 3 1227 248 298 18 0 chr9 84225696 84225710 -39850462 - ID_B1 SINE B4 -94 130 73 3 1227 24 0 0 0 chr9 84226078 84226102 -39850070 + AT_rich Low_complexity Low_complexity 1 24 0 3 1227 508 158 9 9 chr9 84226306 84226421 -39849751 + (TATG)n Simple_repeat Simple_repeat 4 118 0 3 1227 307 358 0 0 chr9 84226786 84226881 -39849291 + MIRb SINE MIR 1 95 -173 3 1227 640 304 99 69 chr9 84227984 84228570 -39847602 + L1MEg LINE L1 741 1376 -4824 3 1227 3556 168 76 11 chr9 84228683 84229351 -39846821 + Lx5 LINE L1 6334 7045 -5 3 1227 635 202 0 0 chr9 84229483 84229592 -39846580 - Lx4B LINE L1 -449 6609 6501 3 1227 1218 237 109 7 chr9 84229714 84229990 -39846182 + Lx5 LINE L1 6585 6912 -146 3 1227 324 0 0 0 chr9 84230022 84230058 -39846114 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1227 974 234 66 9 chr9 84230068 84230190 -39845982 + Lx5 LINE L1 6454 6557 -493 3 1227 531 0 0 0 chr9 84230190 84230249 -39845923 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1227 2205 218 85 6 chr9 84230249 84230753 -39845419 + Lx6 LINE L1 6912 7455 -5 3 1227 1005 86 333 0 chr9 84231285 84231492 -39844680 - L1_Mus3 LINE L1 -519 6119 5844 3 1227 2788 40 0 6 chr9 84231492 84231840 -39844332 + ORR1A0 LTR MaLR 1 346 0 3 1227 1962 94 64 7 chr9 84231840 84232120 -39844052 - L1_Mus3 LINE L1 -35 5848 5553 3 1227 28 48 0 0 chr9 84233309 84233351 -39842821 + AT_rich Low_complexity Low_complexity 1 42 0 3 1227 432 55 0 0 chr9 84233412 84233467 -39842705 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 3 1227 299 297 41 55 chr9 84234161 84234318 -39841854 + MIR SINE MIR 15 158 -104 3 1227 1444 150 57 15 chr9 84234323 84234643 -39841529 + MTC LTR MaLR 1 421 0 3 1227 278 362 86 26 chr9 84235607 84235874 -39840298 + L2a LINE L2 3037 3319 -107 3 1227 535 343 6 0 chr9 84238135 84238313 -39837859 + B3A SINE B2 2 180 -18 3 1227 260 359 184 15 chr9 84243491 84243692 -39832480 - MIRb SINE MIR -33 235 1 3 1227 302 292 158 9 chr9 84243972 84244086 -39832086 + MamSINE1 SINE tRNA 3 133 -157 3 1227 201 154 0 0 chr9 84244814 84244853 -39831319 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 1227 668 277 43 19 chr9 84245010 84245220 -39830952 - B3 SINE B2 0 216 2 3 1227 199 316 0 0 chr9 84245500 84245557 -39830615 - L2 LINE L2 -594 2825 2769 3 1227 969 161 194 0 chr9 84245560 84245777 -39830395 + Lx5 LINE L1 6738 6996 -54 3 1227 551 239 60 0 chr9 84245823 84245940 -39830232 + B3 SINE B2 1 124 -92 3 1227 189 275 44 118 chr9 84245983 84246119 -39830053 - L2 LINE L2 -660 2759 2634 3 1227 240 291 19 102 chr9 84246378 84246535 -39829637 + MER33 DNA MER1_type 6 149 -175 3 1227 972 223 0 9 chr9 84246536 84246749 -39829423 + ORR1D1 LTR MaLR 3 213 -161 3 1227 270 0 0 0 chr9 84247097 84247127 -39829045 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 3 1227 743 40 19 29 chr9 84247786 84247889 -39828283 - B1_Mm SINE Alu 0 147 46 3 1227 277 236 0 122 chr9 84247822 84247904 -39828268 - MT2B2 LTR ERVL -320 264 193 3 1227 707 298 75 40 chr9 84248626 84249025 -39827147 + MTD LTR MaLR 3 415 -4 3 1227 249 336 54 9 chr9 84249919 84250030 -39826142 + PB1D7 SINE Alu 2 117 -3 3 1227 410 139 0 11 chr9 84250118 84250205 -39825967 + CT-rich Low_complexity Low_complexity 2 87 0 3 1227 686 311 63 15 chr9 84250595 84250863 -39825309 + B4A SINE B4 9 289 -3 3 1227 1940 162 8 77 chr9 84251923 84252312 -39823860 + ORR1B2 LTR MaLR 1 362 -5 3 1227 396 0 0 0 chr9 84252314 84252358 -39823814 + (CAAAC)n Simple_repeat Simple_repeat 4 47 0 3 1227 184 208 18 54 chr9 84253203 84253259 -39822913 - MIR SINE MIR -21 241 188 3 1227 268 45 21 43 chr9 84253293 84253340 -39822832 + (CAAAC)n Simple_repeat Simple_repeat 2 47 0 3 1227 306 0 0 0 chr9 84253985 84254019 -39822153 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1227 3674 46 2 0 chr9 84255306 84255784 -39820388 + L1Md_F2 LINE L1 6110 6582 0 3 1227 1630 111 0 0 chr9 84255796 84256022 -39820150 - ORR1A2 LTR MaLR 0 327 102 3 1227 633 289 142 8 chr9 84257047 84257406 -39818766 - LTR52 LTR ERVL -14 407 1 3 1227 1138 120 11 11 chr9 84257506 84257683 -39818489 - B2_Mm1t SINE B2 -14 179 3 3 1227 206 346 132 19 chr9 84260481 84260575 -39815597 - MIRb SINE MIR -32 236 130 3 1227 222 37 0 0 chr9 84260575 84260602 -39815570 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 3 1227 206 346 132 19 chr9 84260602 84260666 -39815506 - MIRb SINE MIR -139 129 61 3 1227 30 59 0 0 chr9 84264542 84264593 -39811579 + AT_rich Low_complexity Low_complexity 1 51 0 3 1227 291 239 84 41 chr9 84265013 84265144 -39811028 - L1_Mur3 LINE L1 -372 5799 5665 3 1227 776 303 119 28 chr9 84265146 84265979 -39810193 - L1_Mur3 LINE L1 -1714 4426 3503 3 1227 24 0 0 0 chr9 84265981 84266005 -39810167 + AT_rich Low_complexity Low_complexity 1 24 0 3 1227 1584 37 0 0 chr9 84266059 84266246 -39809926 - B2_Mm1t SINE B2 -6 187 1 3 1227 360 218 113 43 chr9 84266252 84266367 -39809805 - Lx2B LINE L1 -1 6999 6877 3 1227 422 273 81 17 chr9 84266476 84266711 -39809461 - Lx7 LINE L1 0 7696 7447 3 1227 8805 164 20 10 chr9 84266840 84267311 -39808861 + L1_Mur2 LINE L1 837 1313 -4564 3 1227 183 42 0 0 chr9 84267311 84267335 -39808837 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1227 8805 135 30 29 chr9 84267335 84268080 -39808092 + L1_Mur2 LINE L1 1314 2047 -3830 3 1227 348 64 0 0 chr9 84268080 84268127 -39808045 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1227 8805 135 30 29 chr9 84268127 84268874 -39807298 + L1_Mur2 LINE L1 2048 2808 -3069 3 1227 874 43 0 25 chr9 84268880 84268998 -39807174 + B1_Mus1 SINE Alu 33 147 -1 3 1227 213 132 0 0 chr9 84269000 84269038 -39807134 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 1227 250 56 0 27 chr9 84269040 84269077 -39807095 + L1_Mur2 LINE L1 2827 2862 -3015 3 1227 2384 94 91 3 chr9 84269336 84269688 -39806484 - RLTR9A2 LTR ERVK 0 383 1 3 1227 246 309 0 24 chr9 84269725 84269808 -39806364 - ID4_ SINE ID -2 81 1 3 1227 541 281 53 35 chr9 84270276 84270446 -39805726 + B3A SINE B2 10 182 -16 3 1227 730 246 52 61 chr9 84270451 84270663 -39805509 + B3 SINE B2 7 216 0 3 1227 23 54 0 0 chr9 84270669 84270706 -39805466 + AT_rich Low_complexity Low_complexity 1 37 0 3 1227 609 278 38 30 chr9 84271162 84271430 -39804742 - ORR1E LTR MaLR -3 367 6 3 1227 623 280 5 121 chr9 84272162 84272182 -39803990 - B3A SINE B2 -8 190 172 3 1227 297 51 0 0 chr9 84272182 84272221 -39803951 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1227 623 280 5 121 chr9 84272221 84272415 -39803757 - B3A SINE B2 -27 171 1 3 1227 230 311 190 11 chr9 84272651 84272830 -39803342 - Charlie7 DNA MER1_type -515 2097 1887 3 1227 21 36 0 0 chr9 84272941 84272969 -39803203 + AT_rich Low_complexity Low_complexity 1 28 0 3 1227 3237 57 2 14 chr9 84273267 84273680 -39802492 + L1_Mus2 LINE L1 6159 6566 0 3 1227 10193 220 83 80 chr9 84273887 84275178 -39800994 + Lx9 LINE L1 1570 2923 -2924 3 1227 2670 143 24 11 chr9 84275178 84275638 -39800534 + RMER4A LTR ERVK 1 466 0 3 1227 10193 220 83 80 chr9 84275638 84275884 -39800288 + Lx9 LINE L1 2924 3032 -2815 3 1227 970 160 193 0 chr9 84275884 84276065 -39800107 + B3 SINE B2 1 216 0 3 1227 10193 220 83 80 chr9 84276065 84276086 -39800086 + Lx9 LINE L1 3033 3033 -2814 3 1227 243 0 0 0 chr9 84276086 84276113 -39800059 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1227 10193 220 83 80 chr9 84276113 84276752 -39799420 + Lx9 LINE L1 3033 3667 -2180 3 1227 513 84 0 0 chr9 84276752 84276823 -39799349 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1227 10193 220 83 80 chr9 84276823 84278266 -39797906 + Lx9 LINE L1 3668 5222 -625 3 1227 2834 203 40 5 chr9 84278361 84278915 -39797257 - Lx5 LINE L1 -1 7049 6477 3 153 349 316 64 21 chr9 84279264 84279500 -39796672 - L1M5 LINE L1 -525 5715 5470 3 1228 369 0 0 0 chr9 84279527 84279568 -39796604 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1228 207 0 0 0 chr9 84279572 84279595 -39796577 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 3 1228 270 0 0 0 chr9 84279595 84279625 -39796547 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1228 4851 259 60 54 chr9 84280161 84281933 -39794239 + Lx9 LINE L1 5386 7281 -363 3 1228 4354 201 10 14 chr9 84281933 84282858 -39793314 + Lx2B LINE L1 6080 7000 0 3 1228 4851 231 69 16 chr9 84282858 84283202 -39792970 + Lx9 LINE L1 7282 7644 0 3 1228 192 77 0 0 chr9 84283833 84283859 -39792313 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3 1228 370 248 0 18 chr9 84283861 84283972 -39792200 - Lx6 LINE L1 -44 7416 7308 3 1228 516 80 0 94 chr9 84284576 84284672 -39791500 - L1_Mus2 LINE L1 0 6566 6480 3 1228 2593 157 87 45 chr9 84284710 84285264 -39790908 - RLTR20B3 LTR ERVK 0 577 1 3 1228 323 345 34 0 chr9 84285763 84285882 -39790290 - L4 LINE RTE -593 1436 1314 3 1228 203 334 52 25 chr9 84287184 84287382 -39788790 + MIR SINE MIR 29 268 0 3 1228 190 345 25 33 chr9 84287393 84287513 -39788659 - MIRb SINE MIR -51 217 99 3 1228 980 283 49 23 chr9 84288268 84288572 -39787600 - MER58B DNA MER1_type -17 324 13 3 1228 463 288 73 91 chr9 84288614 84288889 -39787283 - MLT1J LTR MaLR -237 275 6 3 1228 204 125 0 0 chr9 84289103 84289135 -39787037 + (TTA)n Simple_repeat Simple_repeat 2 33 0 3 1228 10547 122 34 13 chr9 84289377 84291789 -39784383 - L1VL1 LINE L1 -1037 2661 193 4 1228 239 359 13 0 chr9 84291878 84291956 -39784216 + LTR16C LTR ERVL 404 482 -7 4 1228 252 0 0 0 chr9 84293711 84293739 -39782433 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1228 1519 249 58 15 chr9 84293990 84294386 -39781786 + MTC LTR MaLR 1 413 -8 4 1228 271 370 78 8 chr9 84294448 84294576 -39781596 - B1F SINE Alu -11 138 2 4 1228 457 310 79 126 chr9 84294742 84295122 -39781050 + ORR1D2 LTR MaLR 8 369 -1 4 1228 2404 277 89 41 chr9 84295123 84296365 -39779807 + ORR1D2-int LTR MaLR 1 1302 -68 4 1228 835 227 68 68 chr9 84296379 84296715 -39779457 - Lx9 LINE L1 -9 7635 7300 4 1228 1193 259 40 29 chr9 84298697 84299058 -39777114 - MTE2b LTR MaLR -2 372 17 4 1228 239 250 17 0 chr9 84299247 84299329 -39776843 + CT-rich Low_complexity Low_complexity 1 83 0 4 1228 958 319 115 28 chr9 84299578 84300143 -39776029 + Lx8 LINE L1 6858 7471 -2 4 1228 747 139 0 0 chr9 84300538 84300667 -39775505 + (TA)n Simple_repeat Simple_repeat 1 129 0 4 1228 438 20 0 0 chr9 84302310 84302361 -39773811 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1228 222 176 0 0 chr9 84303164 84303215 -39772957 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1228 345 331 113 59 chr9 84303258 84303595 -39772577 - L1MD2 LINE L1 -335 6024 5670 4 1228 280 333 63 0 chr9 84305767 84305926 -39770246 + L1MCc LINE L1 31 199 -6224 4 1228 552 30 0 0 chr9 84305990 84306056 -39770116 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 4 1228 9868 139 57 35 chr9 84306057 84308180 -39767992 - Lx3_Mus LINE L1 -17 6992 4820 4 1228 324 0 0 0 chr9 84308180 84308216 -39767956 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1228 9868 198 104 49 chr9 84308216 84312517 -39763655 - Lx3_Mus LINE L1 -1064 4819 208 4 1228 16682 94 32 27 chr9 84312512 84312641 -39763531 - L1_Mur1 LINE L1 -1019 4867 4742 4 1228 183 42 0 0 chr9 84312641 84312665 -39763507 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1228 16682 94 32 27 chr9 84312665 84315205 -39760967 - L1_Mur1 LINE L1 -1145 4741 2184 4 1228 412 365 89 28 chr9 84315561 84316266 -39759906 + L1MCc LINE L1 779 1526 -4897 4 1228 3078 33 51 0 chr9 84316892 84317283 -39758889 - RLTR10A LTR ERVK 0 411 1 4 1228 32 26 0 0 chr9 84318413 84318452 -39757720 + AT_rich Low_complexity Low_complexity 1 39 0 4 1228 432 0 0 0 chr9 84318634 84318682 -39757490 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1228 1288 79 23 0 chr9 84318685 84318862 -39757310 - B2_Mm2 SINE B2 -14 181 1 4 1228 6846 86 19 1 chr9 84320489 84321431 -39754741 - L1_Mus3 LINE L1 -9 6629 5671 4 1228 233 57 0 28 chr9 84321989 84322025 -39754147 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1228 5846 32 0 0 chr9 84322440 84323124 -39753048 + L1Md_F3 LINE L1 5901 6584 0 4 1228 1303 99 14 9 chr9 84323328 84323541 -39752631 - L1_Mus3 LINE L1 -2 6636 6423 4 1228 1359 86 0 0 chr9 84323541 84323727 -39752445 + L1_Mus3 LINE L1 6231 6416 -220 4 1228 30 45 0 0 chr9 84324098 84324142 -39752030 + AT_rich Low_complexity Low_complexity 1 44 0 4 1228 247 91 71 57 chr9 84324182 84324319 -39751853 + (TATAA)n Simple_repeat Simple_repeat 1 138 0 4 1228 507 73 0 0 chr9 84324343 84324411 -39751761 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1228 203 250 15 0 chr9 84324596 84324664 -39751508 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1228 366 308 53 27 chr9 84324837 84325293 -39750879 - L1M2 LINE L1 -3611 2938 2476 4 1228 1083 82 7 0 chr9 84325392 84325538 -39750634 + B1_Mus1 SINE Alu 1 147 -1 4 1228 376 329 134 39 chr9 84325923 84326230 -39749942 - ORR1E LTR MaLR 0 359 24 4 1228 21 36 0 0 chr9 84326316 84326344 -39749828 + AT_rich Low_complexity Low_complexity 1 28 0 4 1228 234 333 21 21 chr9 84326402 84326497 -39749675 + Charlie25 DNA MER1_type 1123 1217 -1307 4 1228 226 376 70 41 chr9 84326712 84326884 -39749288 - MLT1J1 LTR MaLR -129 315 139 4 1228 1837 99 7 11 chr9 84326884 84327161 -39749011 - L1_Mus3 LINE L1 -18 6620 6345 4 1228 1128 77 13 0 chr9 84327162 84327317 -39748855 + L1_Mus3 LINE L1 5883 6039 -599 4 1228 5353 90 1 28 chr9 84327647 84328405 -39747767 - L1Md_F2 LINE L1 -13 6569 5832 4 1228 489 342 45 15 chr9 84328443 84328645 -39747527 + Tigger5 DNA MER2_type 2 209 -2197 4 1228 357 295 23 83 chr9 84328649 84328782 -39747390 + Tigger5 DNA MER2_type 2282 2406 0 4 1228 230 299 108 36 chr9 84328791 84328930 -39747242 + Charlie25 DNA MER1_type 1548 1696 -828 4 1228 1077 31 0 0 chr9 84330445 84330574 -39745598 + (GA)n Simple_repeat Simple_repeat 2 130 0 4 1228 3036 155 67 0 chr9 84331560 84331799 -39744373 + RMER6D LTR ERVK 96 350 -370 4 1228 600 14 0 0 chr9 84331799 84331868 -39744304 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1228 3036 155 67 0 chr9 84331868 84332162 -39744010 + RMER6D LTR ERVK 351 664 -56 4 1228 234 0 0 0 chr9 84332861 84332887 -39743285 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1228 23 54 0 0 chr9 84333637 84333674 -39742498 + AT_rich Low_complexity Low_complexity 1 37 0 4 1228 182 347 53 53 chr9 84335215 84335346 -39740826 - L3 LINE CR1 -767 3722 3592 4 1228 2553 176 93 8 chr9 84335657 84336173 -39739999 + MERVL_2A-int LTR ERVL 5131 5690 -71 4 1228 307 219 0 40 chr9 84336181 84336257 -39739915 + ORR1A3-int LTR MaLR 567 639 -1324 4 1228 299 196 0 0 chr9 84336257 84336313 -39739859 + MERVL_2A-int LTR ERVL 5706 5761 0 4 1228 255 146 0 0 chr9 84336313 84336354 -39739818 + MT2B LTR ERVL 1 41 -560 4 1228 3191 49 3 0 chr9 84336354 84336744 -39739428 + L1Md_F2 LINE L1 5196 5586 -297 4 1228 8178 45 1 2 chr9 84336744 84337741 -39738431 + L1Md_F2 LINE L1 5587 6582 0 4 1228 243 0 0 0 chr9 84337761 84337788 -39738384 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 1228 254 125 16 0 chr9 84337790 84337854 -39738318 + MT2B LTR ERVL 469 533 0 4 1228 197 367 13 0 chr9 84338361 84338440 -39737732 - MIR SINE MIR -102 160 81 4 1228 227 0 91 0 chr9 84338832 84338865 -39737307 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1228 185 200 59 20 chr9 84338881 84338932 -39737240 + MER5B DNA MER1_type 114 166 -12 4 1228 327 49 0 0 chr9 84339067 84339108 -39737064 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1228 7576 65 1 21 chr9 84339273 84340794 -39735378 - L1Md_F2 LINE L1 -11 6571 5077 4 1228 1944 231 5 26 chr9 84340875 84341292 -39734880 + MTD LTR MaLR 9 416 -3 4 1228 22 35 0 0 chr9 84341630 84341659 -39734513 + AT_rich Low_complexity Low_complexity 1 29 0 4 1228 329 311 0 83 chr9 84342034 84342167 -39734005 + MLT1K LTR MaLR 472 593 -2 4 1228 415 316 17 29 chr9 84342993 84343166 -39733006 - MER53 DNA hAT -20 173 3 4 1228 201 74 0 0 chr9 84343968 84343995 -39732177 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1228 392 290 116 55 chr9 84344001 84344293 -39731879 + L1ME4a LINE L1 5771 6080 -44 4 1228 226 230 132 44 chr9 84345452 84345543 -39730629 - Charlie24 DNA MER1_type -1657 793 695 4 1228 241 312 0 30 chr9 84345953 84346019 -39730153 + MIR3 SINE MIR 110 173 -35 4 1228 191 309 0 0 chr9 84346316 84346371 -39729801 + MIRb SINE MIR 79 133 -135 4 1228 369 311 11 0 chr9 84348227 84348317 -39727855 - RSINE1 SINE B4 -3 162 72 4 1228 286 93 0 0 chr9 84348318 84348361 -39727811 - L1_Mur2 LINE L1 -1478 4399 4357 4 1228 1787 272 171 35 chr9 84348359 84349067 -39727105 + Lx5 LINE L1 6455 7434 -26 4 1228 306 0 0 0 chr9 84349076 84349110 -39727062 + (TA)n Simple_repeat Simple_repeat 1 34 0 4 1228 1197 295 47 63 chr9 84349977 84350513 -39725659 - MT2A LTR ERVL -4 529 3 4 1228 706 271 30 35 chr9 84352885 84352922 -39723250 - B3A SINE B2 0 198 167 4 1228 392 0 21 0 chr9 84352922 84352970 -39723202 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1228 706 271 30 35 chr9 84352970 84353131 -39723041 - B3A SINE B2 -32 166 1 4 1228 1116 260 33 11 chr9 84353236 84353508 -39722664 - B4 SINE B4 -6 286 9 4 1228 2771 98 70 26 chr9 84353802 84354117 -39722055 + Lx3_Mus LINE L1 5716 6031 -978 4 1228 399 68 0 0 chr9 84354117 84354176 -39721996 + (TGGA)n Simple_repeat Simple_repeat 2 60 0 4 1228 180 0 0 0 chr9 84354179 84354199 -39721973 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 4 1228 2771 98 70 26 chr9 84354199 84354338 -39721834 + Lx3_Mus LINE L1 6032 6185 -824 4 1228 1976 158 19 16 chr9 84354338 84354706 -39721466 + Lx3_Mus LINE L1 6640 7008 -1 4 1228 985 64 0 0 chr9 84356098 84356223 -39719949 + B1_Mm SINE Alu 21 145 -2 4 1228 22 70 0 0 chr9 84356366 84356409 -39719763 + AT_rich Low_complexity Low_complexity 1 43 0 4 1228 23 33 0 0 chr9 84357710 84357740 -39718432 + AT_rich Low_complexity Low_complexity 1 30 0 4 1228 282 312 73 9 chr9 84357996 84358106 -39718066 - PB1D10 SINE Alu 0 117 1 4 1228 236 272 12 12 chr9 84359173 84359255 -39716917 + L1MB1 LINE L1 5338 5419 -893 4 1228 443 299 108 31 chr9 84359816 84360213 -39715959 + L1MB1 LINE L1 5506 5935 -236 4 1228 280 215 69 88 chr9 84361240 84361342 -39714830 + Tigger13a DNA MER2_type 5 104 -667 4 1228 402 239 35 0 chr9 84362943 84363056 -39713116 + Lx6 LINE L1 7340 7456 -4 4 1228 1155 54 136 6 chr9 84364515 84364684 -39711488 - B2_Mm2 SINE B2 -1 194 4 4 1228 960 268 84 17 chr9 84364972 84365318 -39710854 - Lx8 LINE L1 -340 7133 6765 4 1228 453 255 78 12 chr9 84365315 84365482 -39710690 - L1MA8 LINE L1 -230 6061 5884 4 1228 322 286 30 8 chr9 84365565 84365699 -39710473 + L1ME1 LINE L1 5715 5851 -328 4 1228 22 35 0 0 chr9 84366614 84366643 -39709529 + AT_rich Low_complexity Low_complexity 1 29 0 4 1228 344 265 63 69 chr9 84367389 84367563 -39708609 - L2a LINE L2 0 3426 3254 4 1228 22 0 0 0 chr9 84367727 84367749 -39708423 + AT_rich Low_complexity Low_complexity 1 22 0 4 1228 235 288 53 40 chr9 84367918 84367994 -39708178 + ID4_ SINE ID 3 79 -4 4 1228 198 191 0 0 chr9 84368266 84368308 -39707864 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 4 1228 360 0 0 0 chr9 84368308 84368348 -39707824 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1228 21 0 0 0 chr9 84368868 84368889 -39707283 + AT_rich Low_complexity Low_complexity 1 21 0 4 1228 252 0 0 0 chr9 84369225 84369253 -39706919 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1228 891 45 0 0 chr9 84369254 84369366 -39706806 + (GA)n Simple_repeat Simple_repeat 1 112 0 4 1228 21 0 0 0 chr9 84370286 84370307 -39705865 + AT_rich Low_complexity Low_complexity 1 21 0 4 1228 3036 54 13 5 chr9 84371235 84371628 -39704544 + MTA_Mm LTR MaLR 1 396 0 4 1228 2716 128 69 11 chr9 84372067 84372532 -39703640 + L1_Mm LINE L1 5145 5636 -247 4 1228 282 296 82 0 chr9 84372691 84372789 -39703383 + PB1D10 SINE Alu 2 107 -10 5 1228 245 264 0 0 chr9 84372814 84372867 -39703305 + tRNA-Ala-GCA tRNA tRNA 12 64 -11 5 1228 570 272 44 6 chr9 84375077 84375236 -39700936 - MER58A DNA MER1_type -11 213 49 5 1228 342 115 0 0 chr9 84376314 84376366 -39699806 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 5 1228 3613 191 103 40 chr9 84376367 84377241 -39698931 - Lx5 LINE L1 -1 7049 6121 5 1228 351 242 0 0 chr9 84377557 84377656 -39698516 + (TA)n Simple_repeat Simple_repeat 2 100 0 5 1228 245 311 104 15 chr9 84377817 84377951 -39698221 + MER97c DNA MER1_type? 427 572 -518 5 1228 262 294 167 19 chr9 84378705 84378861 -39697311 + MLT1A1 LTR MaLR 19 197 -211 5 1228 597 268 72 0 chr9 84378903 84379056 -39697116 - B3 SINE B2 -52 164 1 5 1228 233 311 127 24 chr9 84379654 84379819 -39696353 + LTR79 LTR ERVL 334 515 -12 5 1228 307 355 157 42 chr9 84381750 84382253 -39693919 + L1M5 LINE L1 4596 5156 -990 5 1228 192 77 0 0 chr9 84382321 84382347 -39693825 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1228 387 293 196 0 chr9 84382359 84382492 -39693680 + RSINE1 SINE B4 4 162 -3 5 1228 286 226 120 68 chr9 84382524 84382657 -39693515 + L1MC4a LINE L1 7487 7626 -256 5 1228 38759 38 7 0 chr9 84382806 84388926 -39687246 - L1Md_T LINE L1 0 6582 484 5 1228 268 184 12 62 chr9 84389003 84389084 -39687088 + Lx8 LINE L1 7396 7472 -1 5 1228 476 281 105 68 chr9 84390242 84390433 -39685739 - B3A SINE B2 0 198 1 5 1228 854 209 70 81 chr9 84390462 84390806 -39685366 + Lx9 LINE L1 7305 7644 0 5 1228 296 89 36 0 chr9 84391763 84391819 -39684353 + (TTTTG)n Simple_repeat Simple_repeat 1 58 0 5 1228 228 122 0 0 chr9 84392545 84392586 -39683586 + (TATG)n Simple_repeat Simple_repeat 4 44 0 5 1228 427 154 25 17 chr9 84392590 84392709 -39683463 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 5 1228 1069 323 95 27 chr9 84392905 84393817 -39682355 - ERVL-B4-int LTR ERVL -964 4750 3706 5 1228 341 256 19 58 chr9 84393916 84394122 -39682050 - L1_Mur3 LINE L1 -4208 1678 1488 5 1228 410 122 0 26 chr9 84394127 84394203 -39681969 + (TCC)n Simple_repeat Simple_repeat 3 76 0 5 1228 261 119 0 0 chr9 84394193 84394235 -39681937 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1228 25 65 0 0 chr9 84396240 84396286 -39679886 + AT_rich Low_complexity Low_complexity 1 46 0 5 1228 224 298 50 42 chr9 84396584 84396703 -39679469 - MIR3 SINE MIR -5 203 84 5 1228 2887 61 7 17 chr9 84396756 84397172 -39679000 + BGLII LTR ERVK 1 412 -9 5 1228 33561 79 17 2 chr9 84397524 84400706 -39675466 - L1Md_F2 LINE L1 0 6582 3341 5 1228 288 0 0 0 chr9 84400706 84400738 -39675434 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 5 1228 33561 86 20 19 chr9 84400738 84403711 -39672461 - L1Md_F2 LINE L1 -2543 3340 401 5 1228 403 330 17 0 chr9 84404599 84404714 -39671458 + B4A SINE B4 108 224 -68 5 1228 540 100 0 0 chr9 84404786 84404866 -39671306 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1228 854 169 175 0 chr9 84406089 84406272 -39669900 + URR1A DNA MER1_type 1 215 -11 5 1228 3798 36 0 0 chr9 84406348 84406794 -39669378 - L1_Mm LINE L1 -120 5763 5318 5 1228 4133 16 2 0 chr9 84407078 84407565 -39668607 - MT2_Mm LTR ERVL -5 488 1 5 1228 314 0 0 0 chr9 84407565 84407603 -39668569 - MERVL-int LTR ERVL 0 5485 5448 5 1228 392 167 46 35 chr9 84407603 84407690 -39668482 - ORR1A3-int LTR MaLR -1323 640 553 5 1228 15726 31 1 0 chr9 84407690 84409512 -39666660 - MERVL-int LTR ERVL -125 5360 3538 5 1228 2465 7 3 0 chr9 84409512 84409799 -39666373 - MT2_Mm LTR ERVL -205 288 1 5 1228 889 309 32 17 chr9 84409803 84410149 -39666023 - RMER5 LTR ERV1 -104 430 80 5 1229 297 187 0 0 chr9 84411006 84411081 -39665091 + A-rich Low_complexity Low_complexity 1 75 0 5 1229 279 93 0 0 chr9 84411557 84411600 -39664572 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1229 423 0 0 0 chr9 84411859 84411906 -39664266 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1229 433 314 97 0 chr9 84412256 84412380 -39663792 - ID_B1 SINE B4 -44 180 45 5 1229 574 254 8 2 chr9 84412506 84412651 -39663521 - B1_Mur1 SINE Alu -3 144 1 5 1229 618 239 85 0 chr9 84412825 84412955 -39663217 + RSINE1 SINE B4 1 141 -24 5 1229 489 17 0 0 chr9 84412956 84413014 -39663158 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1229 789 170 37 0 chr9 84413057 84413192 -39662980 + B1_Mur4 SINE Alu 1 140 -10 5 1229 267 31 0 0 chr9 84413220 84413252 -39662920 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1229 24 32 0 0 chr9 84413336 84413367 -39662805 + AT_rich Low_complexity Low_complexity 1 31 0 5 1229 282 247 11 11 chr9 84413985 84414079 -39662093 - L1MB2 LINE L1 -10 6161 6068 5 1229 352 345 14 7 chr9 84415475 84415621 -39660551 + RMER5 LTR ERV1 388 534 0 5 1229 5414 210 44 54 chr9 84415777 84417039 -39659133 + Lx5 LINE L1 5818 7049 -1 5 1229 525 273 105 16 chr9 84417948 84418138 -39658034 + B3 SINE B2 1 207 -9 5 1229 2311 110 33 19 chr9 84418162 84418522 -39657650 - L1_Mur2 LINE L1 -160 5717 5353 5 1229 3130 53 0 25 chr9 84418522 84418953 -39657219 - L1Md_F3 LINE L1 0 6584 6170 5 1229 2418 28 0 0 chr9 84418948 84419232 -39656940 + L1Md_T LINE L1 5891 6174 -408 5 1229 1138 107 101 5 chr9 84419231 84419438 -39656734 - L1_Mur2 LINE L1 -515 5362 5136 5 1229 8186 128 38 8 chr9 84419426 84420732 -39655440 + Lx4A LINE L1 5714 7058 0 5 1229 23 54 0 0 chr9 84420732 84420769 -39655403 + AT_rich Low_complexity Low_complexity 1 37 0 5 1229 275 143 41 0 chr9 84421540 84421589 -39654583 + MTEb-int LTR MaLR 1528 1578 -2 5 1229 1231 265 91 17 chr9 84421591 84421944 -39654228 + MTEb LTR MaLR 1 379 0 5 1229 360 315 94 4 chr9 84421944 84422177 -39653995 + L1MA6 LINE L1 6028 6281 -19 5 1229 268 333 89 62 chr9 84422430 84422609 -39653563 - B4 SINE B4 -67 225 42 5 1229 22 0 0 0 chr9 84422782 84422804 -39653368 + AT_rich Low_complexity Low_complexity 1 22 0 5 1229 33 84 0 25 chr9 84423001 84423123 -39653049 + AT_rich Low_complexity Low_complexity 1 119 0 5 1229 2290 12 0 0 chr9 84423387 84423645 -39652527 + L1Md_T LINE L1 5329 5586 -297 5 1229 8940 5 1 0 chr9 84423645 84424640 -39651532 + L1Md_T LINE L1 5587 6582 0 5 1229 3082 93 0 11 chr9 84424904 84425341 -39650831 + Lx LINE L1 6221 6652 -2 5 1229 250 255 28 47 chr9 84425518 84425625 -39650547 + L1M2 LINE L1 3434 3538 -2605 5 1229 454 311 98 26 chr9 84425638 84425872 -39650300 + L1M2 LINE L1 3582 3832 -2311 5 1229 599 139 17 117 chr9 84425919 84426098 -39650074 + HAL1-2a_MD LINE L1 2347 2507 -517 5 1229 395 211 102 34 chr9 84426098 84426245 -39649927 + HAL1-2a_MD LINE L1 2345 2501 -523 5 1229 667 285 171 18 chr9 84426245 84426455 -39649717 + L1M2 LINE L1 3884 4152 -1991 5 1229 774 32 0 0 chr9 84426455 84426548 -39649624 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 5 1229 667 285 171 18 chr9 84426548 84426841 -39649331 + L1M2 LINE L1 4153 4463 -1680 5 1229 441 283 187 41 chr9 84426949 84427673 -39648499 + L1M2 LINE L1 4848 5664 -648 5 1229 236 312 0 12 chr9 84427807 84427888 -39648284 + MLT1A0 LTR MaLR 263 342 -23 5 1229 351 0 0 0 chr9 84427892 84427931 -39648241 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1229 804 96 0 0 chr9 84428405 84428520 -39647652 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 5 1229 1083 75 7 14 chr9 84428520 84428668 -39647504 - B1_Mus1 SINE Alu -1 147 1 5 1229 433 320 109 39 chr9 84429039 84429430 -39646742 + L1M5 LINE L1 5317 5732 -2263 5 1229 3935 67 48 2 chr9 84429481 84430023 -39646149 + Lx3_Mus LINE L1 6438 7004 -5 5 1229 235 261 294 0 chr9 84431044 84431163 -39645009 + B3 SINE B2 2 155 -61 5 1229 282 116 0 0 chr9 84431164 84431207 -39644965 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 1229 2907 220 51 40 chr9 84431286 84431977 -39644195 - RMER1B Other Other -7 1059 362 5 1229 297 0 0 0 chr9 84432601 84432634 -39643538 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 5 1229 255 320 129 34 chr9 84432938 84432965 -39643207 - B3 SINE B2 -13 203 10 5 1229 783 253 33 0 chr9 84432965 84433115 -39643057 - RSINE1 SINE B4 0 165 11 5 1229 1112 104 4 0 chr9 84433157 84433440 -39642732 + (TC)n Simple_repeat Simple_repeat 1 284 0 5 1229 306 0 0 0 chr9 84433443 84433477 -39642695 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1229 262 313 55 106 chr9 84434468 84434704 -39641468 + MER121 Unknown Unknown 141 364 -48 5 1229 1126 230 173 3 chr9 84436074 84436392 -39639780 - ORR1D1 LTR MaLR -2 372 1 5 1229 22 0 0 0 chr9 84436455 84436477 -39639695 + AT_rich Low_complexity Low_complexity 1 22 0 5 1229 342 0 0 0 chr9 84436636 84436674 -39639498 + (TAA)n Simple_repeat Simple_repeat 2 39 0 5 1229 452 320 54 13 chr9 84436726 84436875 -39639297 - RSINE1 SINE B4 -8 157 3 5 1229 894 232 34 19 chr9 84437359 84437566 -39638606 - B3 SINE B2 -4 212 3 5 1229 2963 57 19 17 chr9 84437566 84437976 -39638196 + RLTR10A LTR ERVK 1 411 0 5 1229 1289 230 35 14 chr9 84438335 84438622 -39637550 + Lx5 LINE L1 6754 7046 -4 5 1229 455 167 11 0 chr9 84438676 84438766 -39637406 + GA-rich Low_complexity Low_complexity 2 92 0 5 1229 459 319 0 0 chr9 84438767 84438880 -39637292 + B3A SINE B2 48 160 -38 5 1229 405 0 0 0 chr9 84438886 84438931 -39637241 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1229 446 373 29 29 chr9 84440432 84440610 -39635562 + B4A SINE B4 82 261 -31 5 1229 2238 110 14 11 chr9 84440610 84440968 -39635204 + RLTR15 LTR ERVK 1 359 0 5 1229 446 373 29 29 chr9 84440968 84440996 -39635176 + B4A SINE B4 262 288 -4 5 1229 717 289 6 0 chr9 84441015 84441174 -39634998 + B3A SINE B2 2 161 -37 5 1229 2137 38 4 4 chr9 84441231 84441497 -39634675 + L1Md_A LINE L1 6317 6582 0 5 1229 286 80 20 20 chr9 84442307 84442358 -39633814 + (TAA)n Simple_repeat Simple_repeat 2 52 0 5 1229 780 238 101 0 chr9 84442649 84442838 -39633334 - B3 SINE B2 0 216 9 5 1229 1889 130 15 33 chr9 84443378 84443713 -39632459 - ORR1A4 LTR MaLR 0 329 1 5 1229 246 253 53 13 chr9 84443950 84444026 -39632146 + L1MCb LINE L1 328 406 -6345 5 1229 559 272 69 5 chr9 84445201 84445404 -39630768 + L1MCb LINE L1 743 958 -5087 5 1229 223 361 14 0 chr9 84445908 84445980 -39630192 - ID4 SINE ID -9 74 2 6 1229 27 49 0 0 chr9 84446017 84446058 -39630114 + AT_rich Low_complexity Low_complexity 1 41 0 6 1229 272 158 0 17 chr9 84446598 84446656 -39629516 + (CAT)n Simple_repeat Simple_repeat 2 58 0 6 1229 601 319 77 0 chr9 84446749 84446918 -39629254 - ID_B1 SINE B4 -24 200 19 6 1229 228 67 0 0 chr9 84450415 84450445 -39625727 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1229 189 309 84 24 chr9 84450455 84450538 -39625634 + MIR SINE MIR 67 154 -108 6 1229 228 244 51 0 chr9 84451079 84451157 -39625015 - L1MA8 LINE L1 -216 6075 5994 6 1229 2105 177 66 42 chr9 84451275 84451729 -39624443 - RMER4A LTR ERVK 0 466 2 6 1229 678 267 43 20 chr9 84452372 84452659 -39623513 - Lx8 LINE L1 -1546 5927 5607 6 1229 414 0 0 0 chr9 84452836 84452882 -39623290 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1229 1918 328 65 55 chr9 84453030 84454083 -39622089 + Lx8 LINE L1 6409 7472 -1 6 1229 232 296 185 32 chr9 84454248 84454405 -39621767 - MIRb SINE MIR -71 197 17 6 1229 1035 96 0 7 chr9 84454797 84454944 -39621228 - B1_Mus1 SINE Alu -1 147 2 6 1229 284 122 0 0 chr9 84454944 84454985 -39621187 - B2_Mm2 SINE B2 -75 120 80 6 1229 265 240 13 39 chr9 84454985 84455063 -39621109 - ID4 SINE ID -6 77 2 6 1229 1477 276 46 34 chr9 84455070 84455566 -39620606 + Lx9 LINE L1 6917 7418 -226 6 1229 769 263 216 22 chr9 84455567 84455881 -39620291 + Lx7 LINE L1 7010 7384 -312 6 1229 333 102 0 0 chr9 84455909 84455968 -39620204 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 6 1229 24 67 0 0 chr9 84456125 84456170 -39620002 + AT_rich Low_complexity Low_complexity 1 45 0 6 1229 315 0 0 0 chr9 84456624 84456659 -39619513 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1229 263 164 16 0 chr9 84456661 84456722 -39619450 + Lx2 LINE L1 6936 6997 0 6 1229 29 47 0 0 chr9 84456742 84456785 -39619387 + AT_rich Low_complexity Low_complexity 1 43 0 6 1229 21 89 0 0 chr9 84457074 84457130 -39619042 + AT_rich Low_complexity Low_complexity 1 56 0 6 1229 216 0 0 0 chr9 84458115 84458139 -39618033 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1229 677 202 13 18 chr9 84458517 84458703 -39617469 + Lx6 LINE L1 5740 5926 -1132 6 1229 2632 83 0 65 chr9 84458937 84459336 -39616836 - L1_Mus2 LINE L1 -6 6560 6188 6 1229 902 126 0 0 chr9 84459336 84459463 -39616709 + L1_Mm LINE L1 5543 5669 -214 6 1229 325 205 57 89 chr9 84459547 84459670 -39616502 - L1MA8 LINE L1 -374 5917 5799 6 1229 323 157 13 79 chr9 84459674 84459750 -39616422 - RMER19B LTR ERVK -519 383 313 6 1229 180 77 0 0 chr9 84462469 84462495 -39613677 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 6 1229 430 294 7 73 chr9 84462496 84462632 -39613540 - RSINE1 SINE B4 0 165 39 6 1229 417 86 0 0 chr9 84462872 84462930 -39613242 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1229 317 319 51 42 chr9 84462933 84463051 -39613121 - B4A SINE B4 -23 269 151 6 1229 2148 207 30 65 chr9 84463534 84464076 -39612096 - RMER19C LTR ERVK 0 611 89 6 1229 1992 135 7 0 chr9 84464076 84464379 -39611793 - Lx LINE L1 -403 6251 5947 6 1229 2152 114 67 21 chr9 84464380 84464682 -39611490 + Lx LINE L1 6263 6584 -70 6 1229 189 0 0 0 chr9 84464682 84464703 -39611469 + (TGG)n Simple_repeat Simple_repeat 1 21 0 6 1229 2152 114 67 21 chr9 84464703 84464775 -39611397 + Lx LINE L1 6585 6653 -1 6 1229 365 115 66 0 chr9 84464775 84464836 -39611336 - RMER19C LTR ERVK -546 65 1 6 1229 867 285 91 18 chr9 84465349 84465688 -39610484 + Lx8 LINE L1 7110 7473 0 6 1229 4945 97 108 32 chr9 84465931 84466415 -39609757 - L1_Mus3 LINE L1 -5 6633 6157 6 1229 4154 33 2 0 chr9 84466415 84466896 -39609276 + LTRIS_Mm LTR ERV1 1 482 0 6 1229 4945 97 108 32 chr9 84466896 84467200 -39608972 - L1_Mus3 LINE L1 -482 6156 5785 6 1229 227 333 106 28 chr9 84467316 84467458 -39608714 - L1M2 LINE L1 -2026 4117 3965 6 1229 207 0 0 0 chr9 84467925 84467948 -39608224 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1229 1173 56 0 0 chr9 84467948 84468092 -39608080 - B1_Mus2 SINE Alu -3 144 1 6 1229 5691 121 13 7 chr9 84468519 84469550 -39606622 + Lx3A LINE L1 4893 5913 -1068 6 1229 180 77 0 0 chr9 84469550 84469576 -39606596 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 6 1229 2721 91 0 5 chr9 84469576 84469622 -39606550 + Lx3A LINE L1 5914 5959 -1022 6 1229 462 18 0 0 chr9 84469800 84469855 -39606317 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1229 25 65 0 0 chr9 84469943 84469989 -39606183 + AT_rich Low_complexity Low_complexity 1 46 0 6 1229 633 319 11 21 chr9 84470081 84470270 -39605902 - B3A SINE B2 0 198 12 6 1229 3247 100 9 0 chr9 84471922 84472383 -39603789 - Lx2 LINE L1 0 6997 6533 6 1229 231 259 0 100 chr9 84472428 84472518 -39603654 + MIR SINE MIR 69 149 -113 6 1229 25 51 0 0 chr9 84472875 84472914 -39603258 + AT_rich Low_complexity Low_complexity 1 39 0 6 1229 4646 53 0 7 chr9 84472917 84473502 -39602670 - L1_Mus1 LINE L1 0 6567 5987 6 1229 585 296 34 10 chr9 84473603 84473808 -39602364 - B3 SINE B2 -6 210 1 6 1229 513 305 57 71 chr9 84473850 84474062 -39602110 + MLT1C LTR MaLR 11 219 -248 6 1229 35 0 0 0 chr9 84475594 84475629 -39600543 + AT_rich Low_complexity Low_complexity 1 35 0 6 1229 5102 136 42 12 chr9 84477039 84477901 -39598271 + Lx3A LINE L1 6088 6975 -6 6 1229 237 65 0 0 chr9 84477911 84477942 -39598230 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1229 236 135 0 0 chr9 84478018 84478055 -39598117 - Lx5 LINE L1 -342 6708 6672 6 1229 1549 232 42 0 chr9 84478051 84478361 -39597811 + Lx5 LINE L1 6728 7050 0 6 1229 4741 102 44 8 chr9 84478778 84478792 -39597380 - Lx3A LINE L1 -3 6978 6967 6 1229 216 0 0 0 chr9 84478792 84478816 -39597356 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 1229 4741 102 44 8 chr9 84478816 84479526 -39596646 - Lx3A LINE L1 -15 6966 6228 6 1229 209 289 0 0 chr9 84479618 84479670 -39596502 + CT-rich Low_complexity Low_complexity 3 54 0 6 1229 231 272 159 5 chr9 84480217 84480424 -39595748 - L1MEc LINE L1 -5224 1176 938 6 1229 308 221 88 0 chr9 84480459 84480572 -39595600 - L1MEc LINE L1 -5538 862 740 6 1229 399 41 0 0 chr9 84482270 84482319 -39593853 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1229 282 106 0 0 chr9 84482545 84482592 -39593580 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1229 664 258 76 44 chr9 84482794 84483111 -39593061 + RLTR15 LTR ERVK 33 359 0 6 1229 24 32 0 0 chr9 84483844 84483875 -39592297 + AT_rich Low_complexity Low_complexity 1 31 0 6 1229 6808 220 138 35 chr9 84484078 84484920 -39591252 + L1_Mur3 LINE L1 3325 4363 -1517 6 1229 504 14 27 14 chr9 84484920 84484994 -39591178 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 1229 6808 187 191 6 chr9 84484994 84485237 -39590935 + L1_Mur3 LINE L1 4364 4623 -1257 6 1229 471 18 0 0 chr9 84485237 84485293 -39590879 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1229 6808 187 191 6 chr9 84485293 84486330 -39589842 + L1_Mur3 LINE L1 4624 5716 -164 6 1229 7296 182 18 10 chr9 84486334 84488037 -39588135 - Lx5 LINE L1 -57 6993 5269 6 1229 202 328 241 26 chr9 84488586 84488777 -39587395 - L3 LINE CR1 -24 4465 4234 6 1229 39 22 0 0 chr9 84488824 84488870 -39587302 + AT_rich Low_complexity Low_complexity 1 46 0 6 1229 2175 117 12 0 chr9 84489097 84489422 -39586750 + ORR1A4 LTR MaLR 1 329 0 6 1229 279 0 0 0 chr9 84490110 84490141 -39586031 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1229 211 239 0 0 chr9 84490348 84490394 -39585778 + T-rich Low_complexity Low_complexity 1 46 0 6 1229 233 304 14 0 chr9 84490461 84490530 -39585642 + MTEb LTR MaLR 287 356 -23 6 1229 260 364 0 9 chr9 84490729 84490840 -39585332 - PB1D7 SINE Alu -8 112 3 6 1229 272 352 16 31 chr9 84492698 84492827 -39583345 + MLT1J2 LTR MaLR 117 243 -205 6 1229 248 296 90 24 chr9 84494292 84494518 -39581654 + Lx8 LINE L1 7172 7386 -87 6 1229 974 248 10 0 chr9 84495216 84495422 -39580750 + Lx6 LINE L1 6953 7160 -300 6 1229 3173 179 41 20 chr9 84496132 84496793 -39579379 - Lx2B LINE L1 -5 6995 6321 6 1229 2215 238 71 4 chr9 84497590 84498100 -39578072 - Lx2B LINE L1 -11 6989 6446 6 1229 1582 189 0 0 chr9 84498100 84498380 -39577792 - Lx3C LINE L1 -416 6560 6281 6 1229 493 246 49 58 chr9 84498378 84498425 -39577747 + MusHAL1 LINE L1 2144 2190 -522 6 1229 637 45 22 0 chr9 84498425 84498514 -39577658 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1229 3207 238 78 22 chr9 84498514 84498713 -39577459 + L1_Mur3 LINE L1 3389 3601 -2279 6 1229 547 202 8 15 chr9 84498713 84498844 -39577328 + Lx2B LINE L1 6867 6996 -4 6 1229 3207 238 78 22 chr9 84498844 84499714 -39576458 + L1_Mur3 LINE L1 3602 4518 -1362 6 1229 2031 67 11 32 chr9 84499722 84500000 -39576172 - L1_Mus1 LINE L1 -3 6564 6293 6 1229 1268 40 0 0 chr9 84500000 84500150 -39576022 - L1_Mus1 LINE L1 -275 6292 6143 1 1229 3428 274 44 45 chr9 84500150 84500770 -39575402 + Lx7 LINE L1 4525 5115 -765 2 1229 1106 191 9 14 chr9 84500770 84500993 -39575179 - URR1B DNA MER1_type -2 223 2 3 1229 3428 274 46 42 chr9 84500993 84501771 -39574401 + Lx7 LINE L1 5116 5927 -1769 2 1229 1793 102 56 53 chr9 84501812 84502134 -39574038 - MusHAL1 LINE L1 -147 2565 2243 4 1229 791 141 14 0 chr9 84502134 84502276 -39573896 + CT-rich Low_complexity Low_complexity 3 146 0 5 1229 871 127 19 0 chr9 84502296 84502453 -39573719 - L1_Mus3 LINE L1 -7 6631 6472 6 1229 4986 84 7 11 chr9 84502453 84503209 -39572963 - MusHAL1 LINE L1 -456 2256 1504 4 1229 1715 131 4 0 chr9 84503209 84503483 -39572689 + Lx2 LINE L1 6723 6997 0 7 1229 927 311 49 46 chr9 84503485 84503896 -39572276 + Lx7 LINE L1 6199 6610 -1086 2 1229 1132 302 12 6 chr9 84503898 84504244 -39571928 + Lx7 LINE L1 6977 7324 -372 2 1229 200 209 0 0 chr9 84504334 84504377 -39571795 + (CATA)n Simple_repeat Simple_repeat 2 44 0 8 1229 31 26 0 0 chr9 84504457 84504495 -39571677 + AT_rich Low_complexity Low_complexity 1 38 0 9 1229 592 268 227 0 chr9 84504552 84504750 -39571422 + Lx8 LINE L1 7046 7288 -185 1 1229 34 55 0 0 chr9 84504750 84504805 -39571367 + AT_rich Low_complexity Low_complexity 1 55 0 1 1229 323 60 20 0 chr9 84505113 84505163 -39571009 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1229 297 340 81 7 chr9 84506312 84506460 -39569712 - MIR SINE MIR 0 262 104 1 1229 2621 277 96 18 chr9 84506559 84507496 -39568676 - Lx8 LINE L1 -3 7470 6461 1 1229 4169 79 17 27 chr9 84507519 84508107 -39568065 + L1Md_F2 LINE L1 5999 6580 -2 1 1229 420 266 7 82 chr9 84508177 84508312 -39567860 - Lx8 LINE L1 -780 6693 6569 1 1229 452 356 47 36 chr9 84508334 84508698 -39567474 - Lx8 LINE L1 -1071 6402 6035 1 1229 660 283 195 21 chr9 84508960 84509443 -39566729 + Lx9 LINE L1 7074 7640 -4 1 1229 815 283 56 19 chr9 84509451 84509826 -39566346 - L1M2 LINE L1 -1286 4857 4469 1 1229 320 373 26 35 chr9 84512202 84512430 -39563742 - Charlie1 DNA MER1_type -1185 1596 1371 1 1229 566 312 56 4 chr9 84512512 84512744 -39563428 + L1_Mur3 LINE L1 5505 5748 -132 2 1229 383 306 66 9 chr9 84512744 84512976 -39563196 + B4 SINE B4 2 290 -2 2 1229 606 275 88 34 chr9 84513473 84513767 -39562405 + L1ME2 LINE L1 5452 5761 -403 2 1229 356 282 129 35 chr9 84513813 84514068 -39562104 + L1ME2 LINE L1 5886 6321 -13 2 1229 205 283 0 0 chr9 84514202 84514255 -39561917 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2 1229 439 250 98 16 chr9 84517182 84517304 -39558868 - B1F2 SINE Alu -5 144 13 2 1229 693 61 0 0 chr9 84517306 84517405 -39558767 + (CA)n Simple_repeat Simple_repeat 2 100 0 2 1229 267 31 0 0 chr9 84517430 84517462 -39558710 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1229 21 36 0 0 chr9 84517819 84517847 -39558325 + AT_rich Low_complexity Low_complexity 1 28 0 2 1229 237 339 0 0 chr9 84518022 84518081 -39558091 + B1F2 SINE Alu 1 59 -90 2 1229 1007 106 14 0 chr9 84518490 84518631 -39557541 + B1_Mus2 SINE Alu 5 147 0 2 1229 354 345 26 0 chr9 84518843 84518956 -39557216 - ID_B1 SINE B4 -7 217 102 3 1229 240 149 0 0 chr9 84518979 84519026 -39557146 + (TCC)n Simple_repeat Simple_repeat 1 47 0 3 1229 1554 233 175 53 chr9 84519042 84519182 -39556990 + RMER6D LTR ERVK 3 180 -540 3 1229 998 90 7 0 chr9 84519182 84519326 -39556846 - L1_Mus2 LINE L1 -2 6564 6420 3 1229 1554 233 175 53 chr9 84519326 84519489 -39556683 + RMER6D LTR ERVK 181 362 -358 3 1229 713 70 0 10 chr9 84519489 84519590 -39556582 + (CAATT)n Simple_repeat Simple_repeat 3 102 0 3 1229 1554 233 175 53 chr9 84519590 84519925 -39556247 + RMER6D LTR ERVK 363 719 -1 3 1229 262 206 0 30 chr9 84519932 84520032 -39556140 + CT-rich Low_complexity Low_complexity 2 98 0 3 1229 239 260 53 27 chr9 84520106 84520181 -39555991 + Charlie11 DNA MER1_type 510 586 -1610 3 1229 477 34 0 0 chr9 84521263 84521322 -39554850 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1229 222 302 0 0 chr9 84521326 84521389 -39554783 + GA-rich Low_complexity Low_complexity 3 65 0 3 1229 691 305 51 0 chr9 84521617 84521814 -39554358 - B3 SINE B2 -9 207 1 3 1229 1137 288 61 89 chr9 84522996 84523538 -39552634 - MT2A LTR ERVL -1 532 6 4 1229 6370 146 49 47 chr9 84524690 84525894 -39550278 - Lx4A LINE L1 -2 7056 5851 4 1229 1723 224 202 30 chr9 84525917 84526418 -39549754 + RMER19B LTR ERVK 316 902 0 4 1229 541 132 11 11 chr9 84526419 84526511 -39549661 - Lx4A LINE L1 -1202 5856 5765 4 1229 1333 286 18 3 chr9 84526923 84527249 -39548923 + Tigger7 DNA MER2_type 2 332 -2159 4 1229 476 261 140 7 chr9 84527313 84527528 -39548644 + Tigger7 DNA MER2_type 2250 2488 -3 4 1229 640 289 32 50 chr9 84527703 84527922 -39548250 - B3 SINE B2 0 216 2 4 1229 64 14 0 0 chr9 84528556 84528627 -39547545 + AT_rich Low_complexity Low_complexity 1 71 0 4 1229 4678 184 29 26 chr9 84530812 84531839 -39544333 - RLTR25A LTR ERVK 0 1028 1 4 1229 278 326 11 0 chr9 84532288 84532421 -39543751 - ERVL-int LTR ERVL -3028 2686 2551 4 1229 471 18 0 0 chr9 84532487 84532543 -39543629 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1229 450 369 45 15 chr9 84533161 84533497 -39542675 + Lx7 LINE L1 6769 7114 -582 4 1229 578 302 108 0 chr9 84533677 84533889 -39542283 - MLT1D LTR MaLR 0 505 271 5 1229 686 283 142 48 chr9 84533957 84534330 -39541842 + RLTR11A LTR ERVK 47 455 -73 5 1229 354 91 0 0 chr9 84534330 84534385 -39541787 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1229 686 283 142 48 chr9 84534385 84534449 -39541723 + RLTR11A LTR ERVK 456 524 -4 5 1229 693 117 23 0 chr9 84534487 84534615 -39541557 + (TC)n Simple_repeat Simple_repeat 2 132 0 5 1229 189 0 0 0 chr9 84534617 84534638 -39541534 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1229 710 176 15 15 chr9 84534760 84534893 -39541279 + Lx9 LINE L1 7063 7195 -449 5 1229 22 0 0 0 chr9 84535952 84535974 -39540198 + AT_rich Low_complexity Low_complexity 1 22 0 5 1229 7604 64 11 2 chr9 84537199 84538185 -39537987 - L1Md_F2 LINE L1 -1 6581 5587 5 153 17475 132 48 22 chr9 84538196 84541876 -39534296 - L1Md_F LINE L1 -2016 3867 217 5 1230 7255 71 25 5 chr9 84541988 84542998 -39533174 + L1_Mus1 LINE L1 5543 6636 0 5 1230 23 0 0 0 chr9 84542999 84543022 -39533150 + AT_rich Low_complexity Low_complexity 1 23 0 6 1230 486 288 12 24 chr9 84543105 84543269 -39532903 + U1 snRNA snRNA 4 165 0 6 1230 606 324 14 29 chr9 84543466 84543676 -39532496 - RMER15 LTR ERVL -92 483 277 6 1230 992 306 44 29 chr9 84543774 84544158 -39532014 + RMER5 LTR ERV1 145 534 0 6 1230 2295 110 3 3 chr9 84545674 84546001 -39530171 - ORR1A2 LTR MaLR 0 327 1 6 1230 310 278 69 69 chr9 84546420 84546594 -39529578 + MERVK26-int LTR ERVK 283 456 -6463 6 1230 7814 6 0 0 chr9 84546657 84547526 -39528646 + L1Md_A LINE L1 5714 6582 0 6 1230 3427 94 65 2 chr9 84547652 84548175 -39527997 - ORR1A3-int LTR MaLR -606 1357 802 6 1230 294 344 25 25 chr9 84548183 84548341 -39527831 + MERVK26-int LTR ERVK 6236 6393 -526 6 1230 354 296 22 117 chr9 84548352 84548574 -39527598 - MTEa LTR MaLR -15 364 164 6 1230 459 48 0 0 chr9 84548693 84548755 -39527417 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1230 306 67 0 0 chr9 84548755 84548799 -39527373 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1230 1156 323 76 105 chr9 84548816 84549218 -39526954 - Lx9 LINE L1 -203 7441 7029 7 1230 414 57 0 0 chr9 84549218 84549271 -39526901 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1230 1156 323 76 105 chr9 84549271 84549975 -39526197 - Lx9 LINE L1 -616 7028 6367 7 1230 624 287 93 6 chr9 84550168 84550491 -39525681 + L1_Rod LINE L1 1006 1356 -6252 7 1230 645 264 67 0 chr9 84550573 84550781 -39525391 + L1_Rod LINE L1 1361 1582 -4265 7 1230 3136 84 5 2 chr9 84550796 84551225 -39524947 - L1_Mus2 LINE L1 0 6566 6137 7 1230 3911 80 19 2 chr9 84551225 84551772 -39524400 + L1_Mus2 LINE L1 5588 6119 -447 7 1230 1549 242 52 45 chr9 84551768 84552405 -39523767 + L1_Rod LINE L1 1573 2213 -3634 7 1230 378 0 0 0 chr9 84552407 84552449 -39523723 + (T)n Simple_repeat Simple_repeat 1 42 0 7 1230 27903 77 1 6 chr9 84552472 84557791 -39518381 + L1Md_F2 LINE L1 308 5586 -297 7 1230 8160 41 5 1 chr9 84557791 84558781 -39517391 + L1Md_F2 LINE L1 5587 6580 -2 7 1230 1038 163 15 0 chr9 84558849 84559051 -39517121 - L1_Mus3 LINE L1 -6 6632 6428 7 1230 1883 81 4 0 chr9 84559052 84559298 -39516874 + L1_Mus4 LINE L1 6130 6376 -260 8 1230 530 283 11 5 chr9 84559305 84559490 -39516682 + L1_Rod LINE L1 2292 2477 -3370 7 1230 3022 316 60 21 chr9 84561160 84561283 -39514889 - Lx8 LINE L1 -15 7458 7343 8 1230 324 0 0 0 chr9 84561283 84561319 -39514853 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 8 1230 3022 316 60 21 chr9 84561319 84562386 -39513786 - Lx8 LINE L1 -131 7342 6222 8 1230 351 0 0 0 chr9 84563076 84563115 -39513057 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1230 450 0 0 0 chr9 84563115 84563165 -39513007 + (CAAAC)n Simple_repeat Simple_repeat 4 53 0 8 1230 257 37 54 36 chr9 84563165 84563221 -39512951 + (CAA)n Simple_repeat Simple_repeat 1 57 0 8 1230 345 340 30 35 chr9 84563589 84563790 -39512382 + ERVL-E-int LTR ERVL 3556 3755 -1912 8 1230 560 355 79 24 chr9 84563887 84564355 -39511817 + ERVL-E-int LTR ERVL 3906 4399 -1268 8 1230 810 171 16 0 chr9 84564668 84564797 -39511375 + B1_Mur3 SINE Alu 1 131 -18 8 1230 183 42 0 0 chr9 84565776 84565800 -39510372 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1230 411 83 0 32 chr9 84565809 84565871 -39510301 + B1_Mus1 SINE Alu 1 60 -88 8 1230 214 0 0 157 chr9 84565872 84565974 -39510198 + (CAGAG)n Simple_repeat Simple_repeat 5 90 0 9 1230 750 104 0 0 chr9 84565977 84566083 -39510089 + B1_Mus2 SINE Alu 42 147 0 9 1230 27 0 0 0 chr9 84566083 84566110 -39510062 + AT_rich Low_complexity Low_complexity 1 27 0 9 1230 477 265 57 64 chr9 84567444 84567585 -39508587 - B1_Mur2 SINE Alu 0 149 10 9 1230 1323 95 0 5 chr9 84567592 84567783 -39508389 - B2_Mm2 SINE B2 -2 193 4 9 1230 1336 255 15 21 chr9 84567941 84568281 -39507891 - Lx6 LINE L1 -12 7448 7111 9 1230 24 53 0 0 chr9 84568373 84568411 -39507761 + AT_rich Low_complexity Low_complexity 1 38 0 9 1230 448 274 20 0 chr9 84568516 84568662 -39507510 - L1_Mur3 LINE L1 -737 5143 4995 9 1230 962 284 54 9 chr9 84568652 84569048 -39507124 + Lx7 LINE L1 6860 7301 -395 9 1230 252 253 10 21 chr9 84569063 84569160 -39507012 + T-rich Low_complexity Low_complexity 4 99 0 9 1230 221 219 0 0 chr9 84569167 84569208 -39506964 + GA-rich Low_complexity Low_complexity 4 44 0 1 1230 1193 329 66 17 chr9 84569392 84569875 -39506297 - Lx8 LINE L1 -258 7215 6709 1 1230 261 245 14 48 chr9 84569909 84570055 -39506117 - L1MEf LINE L1 -1604 4603 4463 1 1230 430 273 55 35 chr9 84570774 84571382 -39504790 - L1MEf LINE L1 -2742 3465 2720 1 1230 299 313 14 72 chr9 84571394 84571622 -39504550 - L1MEf LINE L1 -4570 1571 1122 1 1230 390 42 0 0 chr9 84571675 84571723 -39504449 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1230 3219 195 52 3 chr9 84571723 84572316 -39503856 - Lx5 LINE L1 -19 7031 6410 1 1230 19290 121 155 32 chr9 84574340 84577689 -39498483 + L1_Mur2 LINE L1 733 4624 -1253 1 1230 210 37 0 0 chr9 84577689 84577716 -39498456 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 1 1230 19290 122 178 36 chr9 84577716 84578775 -39497397 + L1_Mur2 LINE L1 4625 5725 -152 1 1230 2769 56 9 0 chr9 84578774 84579113 -39497059 - L1_Mus1 LINE L1 -191 6376 6035 1 1230 455 87 14 0 chr9 84579211 84579280 -39496892 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 1 1230 7419 152 40 20 chr9 84579291 84580601 -39495571 + Lx4A LINE L1 5722 7058 0 1 1230 21 0 0 0 chr9 84580601 84580622 -39495550 + AT_rich Low_complexity Low_complexity 1 21 0 1 1230 922 174 113 95 chr9 84580751 84580973 -39495199 - URR1A DNA MER1_type 0 226 1 1 1230 22 0 0 0 chr9 84581507 84581529 -39494643 + AT_rich Low_complexity Low_complexity 1 22 0 1 1230 635 172 0 0 chr9 84581539 84581667 -39494505 + Lx9 LINE L1 7505 7632 -12 1 1230 319 288 65 18 chr9 84582006 84582176 -39493996 - L1MC3 LINE L1 -2 7783 7606 1 1230 24 0 0 0 chr9 84582208 84582232 -39493940 + AT_rich Low_complexity Low_complexity 1 24 0 1 1230 328 229 112 28 chr9 84583329 84583475 -39492697 + MLT1B LTR MaLR 6 171 -219 1 1230 1344 328 36 47 chr9 84583558 84583891 -39492281 - Lx5 LINE L1 -1 7049 6726 1 1230 396 0 0 0 chr9 84583891 84583935 -39492237 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1230 1344 304 72 83 chr9 84583935 84584239 -39491933 - Lx5 LINE L1 -325 6725 6434 1 1230 2024 169 17 76 chr9 84584499 84584909 -39491263 - ORR1B1 LTR MaLR -8 386 1 1 1230 286 294 192 41 chr9 84584936 84585227 -39490945 + L2 LINE L2 1274 1608 -1811 1 1230 29 0 0 0 chr9 84585947 84585976 -39490196 + AT_rich Low_complexity Low_complexity 1 29 0 1 1230 497 321 26 0 chr9 84586073 84586263 -39489909 + Lx8 LINE L1 6650 6844 -629 1 1230 28 48 0 0 chr9 84586824 84586866 -39489306 + AT_rich Low_complexity Low_complexity 1 42 0 1 1230 6773 167 52 6 chr9 84586866 84586924 -39489248 - Lx4A LINE L1 -2 7056 6998 1 1230 288 0 0 0 chr9 84586924 84586956 -39489216 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1230 6773 167 52 6 chr9 84586956 84588146 -39488026 - Lx4A LINE L1 -61 6997 5752 1 1230 228 260 41 0 chr9 84588160 84588233 -39487939 - L1MA9 LINE L1 -84 6228 6153 1 1230 316 279 12 0 chr9 84588273 84588359 -39487813 - L1MA9 LINE L1 -228 6084 5998 1 1230 366 273 135 81 chr9 84588372 84588743 -39487429 - L1MA9 LINE L1 -415 5897 5507 1 1230 21 0 0 0 chr9 84588743 84588764 -39487408 + AT_rich Low_complexity Low_complexity 1 21 0 1 1230 287 329 0 12 chr9 84588902 84588985 -39487187 - RSINE1 SINE B4 -1 164 83 1 1230 441 0 0 0 chr9 84589051 84589100 -39487072 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1230 1024 171 41 18 chr9 84589146 84589367 -39486805 - Lx LINE L1 -3 6651 6426 1 1230 1688 101 50 0 chr9 84589369 84589607 -39486565 + Lx LINE L1 6010 6259 -395 1 1230 812 279 180 72 chr9 84589626 84590625 -39485547 - L1MA9 LINE L1 -846 5294 4188 1 1230 21 36 0 0 chr9 84591231 84591259 -39484913 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 202 132 26 0 chr9 84591817 84591855 -39484317 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1230 4328 195 69 20 chr9 84591855 84591867 -39484305 - Lx2B LINE L1 -11 6989 6977 1 1230 573 110 0 0 chr9 84591867 84591958 -39484214 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 1 1230 4328 195 69 20 chr9 84591958 84592922 -39483250 - Lx2B LINE L1 -24 6976 5967 1 1230 2768 46 35 0 chr9 84592924 84593296 -39482876 + RLTR10 LTR ERVK 1 385 -5 1 1230 9880 151 18 28 chr9 84593299 84595220 -39480952 - Lx2B LINE L1 -1029 5971 4065 1 1230 239 194 16 16 chr9 84596814 84596877 -39479295 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1230 3368 188 69 9 chr9 84597214 84597891 -39478281 - Lx5 LINE L1 -2 7048 6331 1 1230 1636 95 39 0 chr9 84598035 84598266 -39477906 + Lx LINE L1 6153 6392 -262 1 1230 4987 60 12 6 chr9 84598266 84598923 -39477249 + L1Md_F2 LINE L1 5922 6582 0 1 1230 25 0 0 0 chr9 84599166 84599191 -39476981 + AT_rich Low_complexity Low_complexity 1 25 0 1 1230 1664 146 7 23 chr9 84600065 84600373 -39475799 - L1_Mur2 LINE L1 -774 5103 4801 1 1230 24 32 0 0 chr9 84600727 84600758 -39475414 + AT_rich Low_complexity Low_complexity 1 31 0 1 1230 19824 23 1 0 chr9 84600793 84603805 -39472367 - L1Md_A LINE L1 -2 6580 3566 1 1230 484 342 68 12 chr9 84603899 84604062 -39472110 - Tigger5 DNA MER2_type -2199 207 36 1 1230 21 36 0 0 chr9 84605124 84605152 -39471020 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 1119 254 77 6 chr9 84606294 84606643 -39469529 + ORR1D1 LTR MaLR 1 374 0 1 1230 1250 268 65 30 chr9 84606648 84607172 -39469000 + ORR1D1-int LTR MaLR 7 517 -853 1 1230 1249 276 59 0 chr9 84607166 84607553 -39468619 + ORR1D1-int LTR MaLR 959 1368 -2 1 1230 797 313 12 26 chr9 84607555 84607801 -39468371 + ORR1D1 LTR MaLR 1 219 -155 1 1230 1391 278 91 67 chr9 84607846 84608459 -39467713 - Lx9 LINE L1 -206 7438 6811 1 1230 714 133 52 32 chr9 84608493 84608648 -39467524 - Lx3_Mus LINE L1 0 7009 6852 1 1230 2468 119 12 44 chr9 84608651 84609081 -39467091 + Lx3_Mus LINE L1 5852 6267 -742 1 1230 1049 338 62 7 chr9 84609078 84609495 -39466677 - Lx9 LINE L1 -822 6822 6383 1 1230 465 92 0 0 chr9 84609550 84609626 -39466546 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1230 21 0 0 0 chr9 84609767 84609788 -39466384 + AT_rich Low_complexity Low_complexity 1 21 0 1 1230 1115 161 5 11 chr9 84610137 84610325 -39465847 + B2_Mm2 SINE B2 1 187 -8 1 1230 823 211 0 0 chr9 84610745 84610892 -39465280 + B1_Mus1 SINE Alu 2 148 0 1 1230 1418 237 43 40 chr9 84611263 84611633 -39464539 + ORR1D1 LTR MaLR 1 371 -3 1 1230 2495 87 11 6 chr9 84611719 84612076 -39464096 + L1_Mus3 LINE L1 6280 6638 0 1 1230 28 0 0 0 chr9 84614038 84614066 -39462106 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 1005 191 72 20 chr9 84614086 84614337 -39461835 - Lx4B LINE L1 -76 6982 6719 1 1230 23 54 0 0 chr9 84614464 84614501 -39461671 + AT_rich Low_complexity Low_complexity 1 37 0 1 1230 565 342 40 30 chr9 84614521 84614790 -39461382 + B4 SINE B4 1 273 -19 1 1230 390 21 0 0 chr9 84614818 84614865 -39461307 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1230 609 14 0 0 chr9 84614865 84614934 -39461238 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1230 992 230 86 58 chr9 84614961 84615557 -39460615 - RLTR26 LTR ERVK -291 667 1 1 1230 3872 48 2 0 chr9 84616640 84617118 -39459054 - L1Md_F2 LINE L1 -424 6158 5680 1 1230 2719 65 97 5 chr9 84617118 84617491 -39458681 + L1Md_F2 LINE L1 6164 6570 -12 1 1230 303 93 0 0 chr9 84617565 84617608 -39458564 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 1 1230 721 302 91 68 chr9 84617611 84618097 -39458075 - Lx9 LINE L1 -9 7635 7139 1 1230 213 208 39 0 chr9 84618117 84618194 -39457978 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1230 33 80 0 0 chr9 84618195 84618270 -39457902 + AT_rich Low_complexity Low_complexity 1 75 0 1 1230 580 262 93 46 chr9 84618397 84618600 -39457572 + L1M3 LINE L1 3441 3684 -2456 1 1230 3391 200 33 36 chr9 84618600 84619320 -39456852 - RMER6D LTR ERVK 0 720 3 1 1230 580 252 94 47 chr9 84619320 84619417 -39456755 + L1M3 LINE L1 3685 3783 -2357 1 1230 608 197 55 8 chr9 84619417 84619545 -39456627 - RLTR25A LTR ERVK 0 1103 970 1 1230 2795 180 49 18 chr9 84619553 84620256 -39455916 - RLTR25A LTR ERVK -262 766 1 1 1230 663 274 69 22 chr9 84620264 84620495 -39455677 + L1_Mur3 LINE L1 3758 3999 -1881 1 1230 857 156 7 0 chr9 84620499 84620640 -39455532 + Lx3B LINE L1 5621 5762 -1211 1 1230 511 256 16 41 chr9 84620637 84620881 -39455291 + L1_Mur3 LINE L1 4574 4811 -1069 1 1230 425 352 8 0 chr9 84620881 84621003 -39455169 + RSINE1 SINE B4 12 134 -31 1 1230 5959 67 6 8 chr9 84622358 84623140 -39453032 - L1Md_F2 LINE L1 -1 6581 5801 1 1230 252 0 0 0 chr9 84624268 84624296 -39451876 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1230 181 128 0 41 chr9 84624690 84624739 -39451433 + T-rich Low_complexity Low_complexity 5 51 0 1 1230 1269 268 111 39 chr9 84624923 84625365 -39450807 + RMER20A LTR ERVK 1 474 -42 1 1230 3287 123 67 11 chr9 84626308 84626957 -39449215 + MTA_Mm-int LTR MaLR 528 1258 0 1 1230 2999 66 5 8 chr9 84626959 84627354 -39448818 + MTA_Mm LTR MaLR 3 396 0 1 1230 273 167 0 0 chr9 84627420 84627474 -39448698 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1230 258 340 103 9 chr9 84627563 84627670 -39448502 - B3A SINE B2 -2 214 98 1 1230 1542 94 9 0 chr9 84628390 84628614 -39447558 - L1_Mus2 LINE L1 0 6566 6341 1 1230 246 275 58 8 chr9 84628949 84629070 -39447102 - L1MC5 LINE L1 -728 7233 7107 1 1230 3599 47 9 0 chr9 84629424 84629871 -39446301 + L1Md_F2 LINE L1 6132 6582 0 1 1230 281 103 35 0 chr9 84629872 84629930 -39446242 + (TCTG)n Simple_repeat Simple_repeat 2 61 0 1 1230 268 276 50 43 chr9 84629944 84630084 -39446088 + L1M3 LINE L1 3542 3682 -2458 1 1230 22 56 0 0 chr9 84632284 84632320 -39443852 + AT_rich Low_complexity Low_complexity 1 36 0 1 1230 317 348 112 31 chr9 84636545 84636868 -39439304 - L1ME1 LINE L1 -63 6116 5768 1 1230 1020 205 108 0 chr9 84636869 84637118 -39439054 - RMER13B LTR ERVK 0 908 633 1 1230 10924 83 1 9 chr9 84637120 84639470 -39436702 - L1Md_Gf LINE L1 -3180 2706 278 1 1230 375 246 122 15 chr9 84639471 84639715 -39436457 - L1MC LINE L1 -2217 3929 3668 1 1230 275 191 0 16 chr9 84639715 84639779 -39436393 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1230 490 351 47 29 chr9 84639804 84640083 -39436089 - B4 SINE B4 -6 286 3 1 1230 7845 43 8 2 chr9 84640115 84641523 -39434649 - L1Md_F2 LINE L1 0 6582 5164 1 1230 189 107 0 0 chr9 84641558 84641586 -39434586 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1230 304 311 76 44 chr9 84641605 84641763 -39434409 - RSINE1 SINE B4 0 165 3 1 1230 787 305 33 64 chr9 84641834 84642343 -39433829 - L1MC LINE L1 -2538 3608 3120 1 1230 6044 125 43 14 chr9 84642343 84643336 -39432836 - Lx3A LINE L1 -3 6978 5957 1 1230 787 305 33 64 chr9 84643336 84643498 -39432674 - L1MC LINE L1 -3027 3119 2958 1 1230 690 256 65 27 chr9 84643609 84643794 -39432378 - Lx5 LINE L1 -3 7047 6856 1 1230 698 304 81 5 chr9 84643801 84644171 -39432001 - L1MC LINE L1 -3317 2829 2432 1 1230 408 280 32 63 chr9 84644177 84644473 -39431699 - L1M2 LINE L1 -760 5383 5063 1 1230 891 351 16 4 chr9 84644701 84644953 -39431219 - B4A SINE B4 -7 285 31 2 1230 249 65 0 0 chr9 84645168 84645199 -39430973 - Lx9 LINE L1 -801 6843 6813 2 1230 1317 259 95 33 chr9 84645204 84645750 -39430422 - L1_Rod LINE L1 -209 5638 5059 2 1230 818 134 6 0 chr9 84645891 84646055 -39430117 + (TTC)n Simple_repeat Simple_repeat 3 167 0 2 1230 333 0 0 0 chr9 84646055 84646092 -39430080 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1230 193 339 63 40 chr9 84646185 84646311 -39429861 + MER5A DNA MER1_type 13 141 -48 2 1230 441 66 0 0 chr9 84646319 84646380 -39429792 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1230 1004 101 0 0 chr9 84646380 84646519 -39429653 - B2_Mm2 SINE B2 -43 152 14 2 1230 1773 145 28 28 chr9 84646524 84646850 -39429322 + Lx3C LINE L1 6644 6969 -7 2 1230 396 0 0 0 chr9 84646860 84646904 -39429268 + (TAA)n Simple_repeat Simple_repeat 3 46 0 2 1230 24 67 0 0 chr9 84647071 84647116 -39429056 + AT_rich Low_complexity Low_complexity 1 45 0 2 1230 26 0 0 0 chr9 84647663 84647689 -39428483 + AT_rich Low_complexity Low_complexity 1 26 0 2 1230 599 327 28 1 chr9 84647689 84647897 -39428275 - B3A SINE B2 0 216 4 2 1230 274 326 11 11 chr9 84650025 84650118 -39426054 - Lx8 LINE L1 -349 7124 7032 2 1230 192 77 0 0 chr9 84650513 84650539 -39425633 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1230 21 57 0 0 chr9 84650680 84650715 -39425457 + AT_rich Low_complexity Low_complexity 1 35 0 2 1230 686 315 67 32 chr9 84650783 84651065 -39425107 + B4A SINE B4 1 292 0 2 1230 213 121 0 0 chr9 84651709 84651742 -39424430 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1230 345 310 79 9 chr9 84652103 84652217 -39423955 + LTR79 LTR ERVL 404 525 -2 2 1230 282 56 0 0 chr9 84652434 84652470 -39423702 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1230 312 27 0 0 chr9 84652470 84652506 -39423666 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1230 309 26 0 0 chr9 84652730 84652768 -39423404 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1230 2467 234 33 43 chr9 84652818 84653145 -39423027 + L1_Rod LINE L1 3850 4181 -1666 2 1230 432 0 0 0 chr9 84653145 84653193 -39422979 + (ATATG)n Simple_repeat Simple_repeat 3 50 0 2 1230 2467 234 33 43 chr9 84653193 84653652 -39422520 + L1_Rod LINE L1 4182 4627 -1220 2 1230 483 18 0 0 chr9 84653656 84653712 -39422460 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1230 34 42 0 0 chr9 84653804 84653852 -39422320 + AT_rich Low_complexity Low_complexity 1 48 0 2 1230 629 286 102 25 chr9 84653982 84654179 -39421993 + B3 SINE B2 5 216 0 2 1230 25 31 0 0 chr9 84654258 84654290 -39421882 + AT_rich Low_complexity Low_complexity 1 32 0 2 1230 288 228 20 20 chr9 84654602 84654750 -39421422 + (CAT)n Simple_repeat Simple_repeat 1 148 0 2 1230 430 258 6 6 chr9 84654805 84654965 -39421207 + (CAT)n Simple_repeat Simple_repeat 1 160 0 2 1230 185 394 21 21 chr9 84656236 84656376 -39419796 + L2 LINE L2 2550 2689 -730 2 1230 538 346 56 0 chr9 84656529 84656743 -39419429 - Tigger5 DNA MER2_type -2180 226 1 2 1230 250 286 112 41 chr9 84657148 84657345 -39418827 - L1MD1 LINE L1 -250 5992 5782 2 1230 4051 7 0 0 chr9 84657766 84658250 -39417922 - L1Md_T LINE L1 0 6582 6129 2 1230 204 279 0 0 chr9 84658250 84658287 -39417885 + T-rich Low_complexity Low_complexity 2 38 0 2 1230 310 341 16 99 chr9 84658325 84658517 -39417655 - L1MD1 LINE L1 -723 5519 5344 2 1230 347 106 0 0 chr9 84658522 84658569 -39417603 - Lx3_Mus LINE L1 -451 6558 6512 2 1230 27 0 0 0 chr9 84658641 84658668 -39417504 + AT_rich Low_complexity Low_complexity 1 27 0 2 1230 388 326 65 93 chr9 84658668 84659054 -39417118 - L1MD1 LINE L1 -1617 4529 4155 2 1230 4213 133 15 33 chr9 84659077 84659799 -39416373 - Lx3A LINE L1 -8 6973 6265 2 1230 737 229 15 0 chr9 84660190 84660321 -39415851 - ETnERV2-int LTR ERVK -204 7202 7070 2 1230 3225 101 4 14 chr9 84660322 84660813 -39415359 - Lx3B LINE L1 -705 6268 5783 2 1230 2153 0 4 0 chr9 84660820 84661064 -39415108 - L1Md_T LINE L1 0 6582 6338 2 1230 6575 11 0 0 chr9 84661064 84662184 -39413988 + L1Md_T LINE L1 5202 6321 -261 2 1230 7664 107 10 5 chr9 84662167 84663285 -39412887 - Lx3B LINE L1 -73 5813 4690 2 1230 377 86 0 17 chr9 84663284 84663343 -39412829 - L1_Mur3 LINE L1 -1486 4394 4337 2 1230 312 234 70 39 chr9 84663435 84663564 -39412608 + L1MCa LINE L1 1018 1150 -5358 2 1230 802 306 86 37 chr9 84663827 84664176 -39411996 + ORR1D1 LTR MaLR 1 366 -8 2 1230 333 310 29 15 chr9 84664189 84664414 -39411758 - L1_Mur3 LINE L1 -842 5455 5193 2 1230 306 0 0 0 chr9 84664454 84664488 -39411684 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1230 430 315 71 0 chr9 84664548 84664745 -39411427 + L1M2 LINE L1 4903 5113 -1030 2 1230 614 311 154 63 chr9 84664792 84665252 -39410920 - L1MD1 LINE L1 -2733 3413 2902 2 1230 543 85 0 0 chr9 84665252 84665334 -39410838 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1230 614 311 154 63 chr9 84665334 84665559 -39410613 - L1MD1 LINE L1 -3245 2901 2665 2 1230 227 247 113 0 chr9 84665602 84665699 -39410473 - L1M5 LINE L1 -3544 2602 2495 2 1230 180 337 61 40 chr9 84666112 84666211 -39409961 + L4 LINE RTE 1030 1130 -899 2 1230 245 213 40 13 chr9 84666253 84666329 -39409843 - L1ME2z LINE L1 -41 6403 6326 2 1230 303 286 52 0 chr9 84666589 84666666 -39409506 + B4A SINE B4 61 141 -151 2 1230 1356 298 151 16 chr9 84666739 84667454 -39408718 - Lx8 LINE L1 -132 7341 6531 2 1230 237 240 13 26 chr9 84667542 84667619 -39408553 + (TTATA)n Simple_repeat Simple_repeat 4 79 0 2 1230 489 34 0 0 chr9 84669383 84669442 -39406730 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1230 248 53 26 0 chr9 84669442 84669480 -39406692 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1230 392 412 6 6 chr9 84669769 84669940 -39406232 + B4A SINE B4 45 215 -77 2 1230 777 158 11 0 chr9 84671334 84671515 -39404657 + CT-rich Low_complexity Low_complexity 1 182 0 2 1230 35 63 0 0 chr9 84671686 84671749 -39404423 + AT_rich Low_complexity Low_complexity 1 63 0 2 1230 423 0 0 0 chr9 84672124 84672171 -39404001 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1231 193 290 117 31 chr9 84675530 84675658 -39400514 - MIR SINE MIR -92 170 32 2 1231 517 329 24 24 chr9 84676862 84677030 -39399142 - B3A SINE B2 -30 168 1 2 1231 333 0 0 0 chr9 84677048 84677085 -39399087 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1231 423 0 0 0 chr9 84680118 84680165 -39396007 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1231 222 37 0 0 chr9 84680165 84680191 -39395981 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1231 455 73 15 0 chr9 84681612 84681680 -39394492 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1231 484 172 180 33 chr9 84681806 84681956 -39394216 - Lx3A LINE L1 0 7009 6837 2 1231 481 247 138 79 chr9 84682254 84682325 -39393847 + B4 SINE B4 24 223 -69 2 1231 864 68 0 8 chr9 84682325 84682443 -39393729 + B1_Mm SINE Alu 29 145 -2 2 1231 236 302 8 145 chr9 84682464 84682588 -39393584 + ID_B1 SINE B4 81 187 -37 2 1231 495 341 6 0 chr9 84682852 84683016 -39393156 - RSINE1 SINE B4 0 165 1 2 1231 2015 63 224 20 chr9 84683843 84684182 -39391990 - Lx3A LINE L1 -1304 5677 5270 2 1231 399 75 37 12 chr9 84684190 84684271 -39391901 + (TTTTTG)n Simple_repeat Simple_repeat 1 83 0 2 1231 526 74 21 21 chr9 84684271 84684368 -39391804 - Lx3A LINE L1 -590 5296 5200 2 1231 8004 110 32 25 chr9 84684362 84684480 -39391692 + Lx3A LINE L1 5684 5790 -1191 2 1231 1053 95 0 0 chr9 84684480 84684617 -39391555 + B1_Mus1 SINE Alu 2 138 -10 2 1231 309 51 0 0 chr9 84684617 84684656 -39391516 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1231 8004 110 32 25 chr9 84684656 84685819 -39390353 + Lx3A LINE L1 5791 6974 -7 2 1231 21 0 0 0 chr9 84685819 84685840 -39390332 + AT_rich Low_complexity Low_complexity 1 21 0 2 1231 248 321 51 13 chr9 84685987 84686066 -39390106 + RSINE1 SINE B4 80 161 -4 2 1231 610 259 100 5 chr9 84686668 84686858 -39389314 + B3 SINE B2 3 210 -6 2 1231 236 321 68 43 chr9 84686923 84687077 -39389095 - MIRc SINE MIR -62 206 53 2 1231 23 0 0 0 chr9 84687948 84687971 -39388201 + AT_rich Low_complexity Low_complexity 1 23 0 2 1231 409 143 0 0 chr9 84689070 84689154 -39387018 - Lx9 LINE L1 -70 7574 7491 2 1231 594 39 0 0 chr9 84689169 84689246 -39386926 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2 1231 760 224 173 0 chr9 84689261 84689475 -39386697 - Lx9 LINE L1 -240 7404 7154 2 1231 1071 245 168 11 chr9 84689489 84689840 -39386332 + Lx9 LINE L1 6438 6843 -801 2 1231 5392 22 0 0 chr9 84689837 84690463 -39385709 - L1Md_T LINE L1 -700 5183 4558 2 1231 3622 12 0 0 chr9 84690461 84690873 -39385299 + L1Md_T LINE L1 5175 5586 -297 2 1231 8042 53 0 0 chr9 84690873 84691869 -39384303 + L1Md_T LINE L1 5587 6582 0 2 1231 960 224 4 103 chr9 84691878 84692151 -39384021 + Lx9 LINE L1 6834 7079 -565 2 1231 913 228 95 4 chr9 84692176 84692449 -39383723 - Lx9 LINE L1 -32 7612 7315 2 1231 453 248 137 0 chr9 84692449 84692566 -39383606 + Lx9 LINE L1 7171 7303 -341 2 1231 258 32 0 0 chr9 84692587 84692618 -39383554 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1231 467 344 18 59 chr9 84692792 84692962 -39383210 - RSINE1 SINE B4 -2 163 1 2 1231 23 0 0 0 chr9 84692976 84692999 -39383173 + AT_rich Low_complexity Low_complexity 1 23 0 2 1231 406 297 157 36 chr9 84693038 84693401 -39382771 - L1M4 LINE L1 -2875 3271 2865 2 1231 398 309 84 39 chr9 84693401 84693556 -39382616 + RSINE1 SINE B4 2 163 -2 2 1231 408 40 0 0 chr9 84693623 84693673 -39382499 + (CTA)n Simple_repeat Simple_repeat 2 51 0 2 1231 265 343 48 48 chr9 84693713 84693817 -39382355 - RSINE1 SINE B4 -61 104 1 2 1231 268 254 61 9 chr9 84694410 84694525 -39381647 - L1MC LINE L1 -3403 2743 2623 2 1231 22 0 0 0 chr9 84694730 84694752 -39381420 + AT_rich Low_complexity Low_complexity 1 22 0 2 1231 309 26 0 0 chr9 84695631 84695669 -39380503 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2 1231 1053 102 0 26 chr9 84695730 84695881 -39380291 + B1_Mus2 SINE Alu 1 147 0 2 1231 486 0 0 0 chr9 84695887 84695941 -39380231 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1231 737 90 9 0 chr9 84695942 84696053 -39380119 + (GAAAA)n Simple_repeat Simple_repeat 4 115 0 2 1231 2635 98 19 3 chr9 84696213 84696592 -39379580 - Lx3_Mus LINE L1 -8 7001 6617 2 1231 1707 111 55 14 chr9 84696594 84696869 -39379303 + Lx3_Mus LINE L1 5923 6208 -801 2 1231 27 0 0 0 chr9 84697104 84697131 -39379041 + AT_rich Low_complexity Low_complexity 1 27 0 2 1231 633 27 0 0 chr9 84697242 84697317 -39378855 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 3 1231 1166 280 78 39 chr9 84697355 84697767 -39378405 - Lx8 LINE L1 -157 7316 6889 3 1231 445 280 24 8 chr9 84697771 84697897 -39378275 - Lx8 LINE L1 -1018 6455 6328 3 1231 283 278 121 9 chr9 84698287 84698403 -39377769 - Lx9 LINE L1 -1757 5887 5759 3 1231 2462 191 64 0 chr9 84698410 84698892 -39377280 + RMER20A LTR ERVK 3 515 -1 3 1231 640 333 57 7 chr9 84698919 84699218 -39376954 - Lx9 LINE L1 -156 5691 5378 3 1231 305 326 48 10 chr9 84699230 84699499 -39376673 + L1_Mur1 LINE L1 4474 4757 -1123 3 1231 202 192 39 0 chr9 84699512 84699564 -39376608 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1231 309 185 0 0 chr9 84699630 84699695 -39376477 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1231 339 333 11 53 chr9 84699700 84699966 -39376206 + L1_Rod LINE L1 4777 5031 -816 3 1231 183 114 0 0 chr9 84700089 84700124 -39376048 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1231 325 91 0 0 chr9 84700124 84700168 -39376004 + L1Md_F3 LINE L1 6399 6442 -142 3 1231 478 312 0 64 chr9 84700248 84700436 -39375736 + B3A SINE B2 7 182 -16 3 1231 331 250 25 16 chr9 84700516 84700638 -39375534 + L1_Rod LINE L1 5105 5227 -620 3 1231 231 36 0 0 chr9 84701020 84701048 -39375124 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1231 22 35 0 0 chr9 84701199 84701228 -39374944 + AT_rich Low_complexity Low_complexity 1 29 0 3 1231 228 67 0 0 chr9 84701676 84701706 -39374466 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1231 270 95 0 0 chr9 84701800 84701842 -39374330 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1231 34 24 0 0 chr9 84702463 84702504 -39373668 + AT_rich Low_complexity Low_complexity 1 41 0 3 1231 4668 73 41 3 chr9 84702548 84703181 -39372991 - L1Md_F2 LINE L1 -13 6569 5913 3 1231 518 100 0 0 chr9 84703181 84703251 -39372921 - L1Md_F2 LINE L1 -925 5659 5590 3 1231 1856 69 0 0 chr9 84703251 84703513 -39372659 - L1Md_F LINE L1 -3616 2267 2006 3 1231 951 117 121 0 chr9 84703528 84703769 -39372403 - L1Md_F LINE L1 -2400 1514 1204 3 1231 361 176 11 45 chr9 84703770 84703859 -39372313 - B1F1 SINE Alu -63 86 1 3 1231 5274 119 38 24 chr9 84703859 84704702 -39371470 - L1Md_F LINE L1 -5392 1224 370 3 1231 3772 85 0 0 chr9 84704698 84705247 -39370925 - L1Md_A LINE L1 -4137 1746 1198 3 1231 369 0 0 0 chr9 84705247 84705288 -39370884 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1231 1611 115 24 48 chr9 84705288 84705432 -39370740 - L1Md_A LINE L1 -5527 1197 1061 3 1231 4522 84 2 2 chr9 84705417 84706051 -39370121 + L1_Mm LINE L1 1833 2466 -3417 3 1231 189 0 0 0 chr9 84706074 84706095 -39370077 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3 1231 2681 49 0 3 chr9 84706119 84706445 -39369727 - L1Md_F2 LINE L1 -92 6490 6166 3 1231 242 0 0 0 chr9 84706445 84706472 -39369700 - Lx LINE L1 -973 5681 5655 3 1231 23734 86 11 14 chr9 84706471 84709854 -39366318 + L1_Mm LINE L1 2463 5832 -51 3 1231 1184 96 23 0 chr9 84709854 84710031 -39366141 + L1_Mus1 LINE L1 6387 6567 0 3 1231 41 21 0 0 chr9 84710209 84710257 -39365915 + AT_rich Low_complexity Low_complexity 1 48 0 3 1231 198 103 0 0 chr9 84710277 84710306 -39365866 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1231 2005 193 142 2 chr9 84710336 84710823 -39365349 - Lx9 LINE L1 -1 7643 7089 3 1231 719 261 166 24 chr9 84710907 84711235 -39364937 - MTD LTR MaLR 0 419 1 3 1231 535 198 0 0 chr9 84711432 84711538 -39364634 + Lx2 LINE L1 6158 6263 -734 3 1231 511 192 23 9 chr9 84711770 84711988 -39364184 + (TAGA)n Simple_repeat Simple_repeat 1 221 0 3 1231 201 154 0 0 chr9 84712417 84712456 -39363716 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1231 735 12 0 0 chr9 84712492 84712576 -39363596 + (GA)n Simple_repeat Simple_repeat 2 85 0 3 1231 405 348 64 35 chr9 84714115 84714398 -39361774 - L1M5 LINE L1 -1391 4755 4465 3 1231 649 294 30 5 chr9 84714508 84714710 -39361462 + B3 SINE B2 2 208 -8 3 1231 244 304 40 74 chr9 84714853 84715002 -39361170 - L1M5 LINE L1 -2020 4126 3983 3 1231 25 31 0 0 chr9 84715184 84715216 -39360956 + AT_rich Low_complexity Low_complexity 1 32 0 3 1231 224 232 0 0 chr9 84716243 84716299 -39359873 + T-rich Low_complexity Low_complexity 1 56 0 3 1231 573 131 84 0 chr9 84716344 84716399 -39359773 - Lx2 LINE L1 -2 6995 6941 3 1231 378 0 0 0 chr9 84716399 84716441 -39359731 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1231 573 131 84 0 chr9 84716441 84716492 -39359680 - Lx2 LINE L1 -57 6940 6881 3 1231 216 86 0 0 chr9 84716642 84716677 -39359495 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1231 5423 128 58 17 chr9 84716797 84717724 -39358448 + Lx3B LINE L1 6006 6970 -3 3 1231 483 296 91 33 chr9 84717779 84718108 -39358064 + L1MC3 LINE L1 6879 7226 -559 3 1231 254 354 118 20 chr9 84718458 84718835 -39357337 + MLT1G1-int LTR MaLR 387 864 -625 3 1231 289 384 80 31 chr9 84719029 84719354 -39356818 + MLT1G1-int LTR MaLR 1039 1379 -30 3 1231 957 348 128 13 chr9 84719388 84719842 -39356330 + MLT1G1 LTR MaLR 46 551 -28 3 1231 288 0 0 0 chr9 84719863 84719895 -39356277 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1231 22 35 0 0 chr9 84721275 84721304 -39354868 + AT_rich Low_complexity Low_complexity 1 29 0 3 1231 231 103 0 0 chr9 84721522 84721561 -39354611 + (TTGG)n Simple_repeat Simple_repeat 1 39 0 3 1231 1311 233 26 20 chr9 84722018 84722320 -39353852 + RLTR14 LTR ERV1 48 351 -31 3 1231 282 336 25 95 chr9 84722711 84722869 -39353303 + AmnSINE1 SINE SINE 213 359 -216 3 1231 21 0 0 0 chr9 84722915 84722936 -39353236 + AT_rich Low_complexity Low_complexity 1 21 0 3 1231 273 167 0 0 chr9 84724787 84724841 -39351331 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1231 409 76 30 0 chr9 84724911 84724977 -39351195 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1231 511 278 34 34 chr9 84724981 84725156 -39351016 - Lx9 LINE L1 -172 7472 7298 3 1231 1188 288 32 27 chr9 84725158 84725529 -39350643 + MTD LTR MaLR 47 419 0 3 1231 1095 201 42 69 chr9 84725605 84725894 -39350278 - RLTR12B LTR ERVK -7 521 241 3 1231 1293 161 109 29 chr9 84725918 84726194 -39349978 - RLTR12B LTR ERVK -230 298 1 3 1231 633 335 30 20 chr9 84726884 84727085 -39349087 - B3 SINE B2 -11 205 3 3 1231 1969 278 68 24 chr9 84727156 84728239 -39347933 - L1MA8 LINE L1 -94 6197 5060 3 1231 237 336 28 14 chr9 84728242 84728384 -39347788 + L1M4c LINE L1 2369 2512 -4337 3 1231 321 351 81 38 chr9 84728686 84729006 -39347166 + L1M4c LINE L1 2559 2892 -3958 3 1231 204 238 212 12 chr9 84730197 84730282 -39345890 - MER5A DNA MER1_type -51 138 37 3 1231 195 361 14 14 chr9 84730233 84730306 -39345866 + MER5A DNA MER1_type 117 189 0 3 1231 239 0 0 31 chr9 84730957 84730989 -39345183 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1231 5109 201 31 18 chr9 84731804 84732890 -39343282 - Lx5 LINE L1 -3 7047 5947 3 1231 1146 117 0 0 chr9 84733266 84733522 -39342650 + (TTCC)n Simple_repeat Simple_repeat 1 256 0 3 1231 798 269 102 25 chr9 84733536 84733890 -39342282 - Lx9 LINE L1 -7 7637 7257 3 1231 1064 222 240 7 chr9 84733885 84734352 -39341820 + Lx9 LINE L1 6688 7263 -381 3 1231 398 157 12 0 chr9 84735455 84735538 -39340634 + CT-rich Low_complexity Low_complexity 1 84 0 3 1231 1352 56 0 6 chr9 84735544 84735723 -39340449 + (TTCTC)n Simple_repeat Simple_repeat 1 178 0 3 1231 264 314 0 0 chr9 84735724 84735794 -39340378 + CT-rich Low_complexity Low_complexity 3 72 0 3 1231 22 35 0 0 chr9 84736437 84736466 -39339706 + AT_rich Low_complexity Low_complexity 1 29 0 3 1231 194 0 39 0 chr9 84736648 84736674 -39339498 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1231 2466 117 114 0 chr9 84737444 84737847 -39338325 - RLTR11B LTR ERVK 0 453 5 3 1231 265 374 33 53 chr9 84738963 84739220 -39336952 + Lx8 LINE L1 7088 7464 -180 3 1231 2497 71 12 0 chr9 84739241 84739579 -39336593 - LTRIS2 LTR ERV1 0 564 223 3 1231 33 0 0 0 chr9 84739585 84739618 -39336554 + AT_rich Low_complexity Low_complexity 1 33 0 3 1231 34112 78 3 1 chr9 84739645 84745937 -39330235 - L1Md_F2 LINE L1 0 6585 304 3 1231 331 137 0 0 chr9 84745916 84745967 -39330205 - L1Md_F2 LINE L1 -5987 632 582 3 1231 1874 66 12 0 chr9 84745967 84746211 -39329961 - LTRIS2 LTR ERV1 -313 251 5 3 1231 485 121 12 0 chr9 84746232 84746315 -39329857 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 3 1231 18038 86 2 1 chr9 84746500 84749030 -39327142 + L1_Mm LINE L1 1296 3828 -2055 3 1231 759 46 0 18 chr9 84749030 84749140 -39327032 + L1Md_F2 LINE L1 6463 6570 -12 3 1231 219 36 0 0 chr9 84749187 84749215 -39326957 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1231 285 286 186 36 chr9 84749256 84749394 -39326778 + L1MC3 LINE L1 6800 6969 -816 3 1231 769 189 205 0 chr9 84749394 84749579 -39326593 - URR1B DNA MER1_type 0 225 3 3 1231 285 286 186 36 chr9 84749579 84749774 -39326398 + L1MC3 LINE L1 6970 7183 -602 3 1231 2041 111 10 13 chr9 84749778 84750089 -39326083 + Lx LINE L1 6321 6630 -24 3 1231 1052 87 0 0 chr9 84750412 84750550 -39325622 + B1_Mus1 SINE Alu 1 138 -10 3 1231 336 64 0 0 chr9 84750550 84750597 -39325575 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1231 704 249 128 26 chr9 84750773 84751078 -39325094 + L1MC3 LINE L1 7431 7766 -19 3 1231 635 262 50 72 chr9 84752299 84752480 -39323692 - B3 SINE B2 -17 178 2 3 1231 747 297 129 25 chr9 84753767 84754140 -39322032 + MTD LTR MaLR 10 379 0 3 1231 22 0 0 0 chr9 84754161 84754183 -39321989 + AT_rich Low_complexity Low_complexity 1 22 0 3 1231 721 31 21 0 chr9 84756526 84756622 -39319550 + (TC)n Simple_repeat Simple_repeat 1 98 0 3 1231 504 0 0 0 chr9 84756700 84756756 -39319416 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1231 1156 62 7 0 chr9 84758306 84758452 -39317720 + B1_Mus1 SINE Alu 2 148 0 3 1231 439 141 0 21 chr9 84758504 84758598 -39317574 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1231 627 327 143 15 chr9 84758699 84759217 -39316955 + L1M2 LINE L1 2346 2929 -3214 3 1231 39107 32 3 6 chr9 84759217 84765409 -39310763 - L1Md_T LINE L1 0 6582 413 3 1231 473 335 105 30 chr9 84765532 84766056 -39310116 + L1M4 LINE L1 3174 3736 -2410 3 1231 359 370 29 6 chr9 84766096 84766270 -39309902 + L1M2 LINE L1 3817 3994 -2149 3 1231 325 285 24 31 chr9 84766271 84766398 -39309774 + L1MA9 LINE L1 4051 4176 -1970 3 1231 462 252 96 4 chr9 84766462 84766640 -39309532 + L1MA9 LINE L1 4863 5073 -1073 3 1231 331 354 83 0 chr9 84766709 84766853 -39309319 + HAL1-3A_ME LINE L1 2284 2439 -419 3 1231 522 275 0 0 chr9 84766859 84767130 -39309042 + GA-rich Low_complexity Low_complexity 1 271 0 3 1231 270 206 0 40 chr9 84767135 84767173 -39308999 + polypurine Low_complexity Low_complexity 1 36 0 3 1231 327 49 0 0 chr9 84767173 84767214 -39308958 + (GGGGA)n Simple_repeat Simple_repeat 5 45 0 3 1231 270 206 0 40 chr9 84767214 84767251 -39308921 + polypurine Low_complexity Low_complexity 37 72 0 4 1231 764 241 85 10 chr9 84767316 84767517 -39308655 + B3 SINE B2 1 216 0 4 1231 869 319 50 45 chr9 84767583 84768204 -39307968 + L1MA9 LINE L1 5322 5945 -367 3 1231 306 331 56 78 chr9 84768234 84768503 -39307669 + MLT2B2 LTR ERVL 1 263 -252 4 1231 401 216 69 35 chr9 84771320 84771459 -39304713 - L1M2 LINE L1 -472 5699 5555 4 1231 234 0 0 0 chr9 84771459 84771485 -39304687 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1231 723 295 11 33 chr9 84771545 84771727 -39304445 - B3 SINE B2 -37 179 2 4 1231 490 336 67 17 chr9 84771739 84772039 -39304133 - L1M2 LINE L1 -869 5274 4960 4 1231 4851 190 57 4 chr9 84772649 84774109 -39302063 + Lx3C LINE L1 5401 7050 -8 4 1231 186 71 0 0 chr9 84774908 84774936 -39301236 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1231 1108 242 95 64 chr9 84774992 84775350 -39300822 - ORR1D1 LTR MaLR 0 374 6 4 1231 4611 247 83 25 chr9 84775359 84776650 -39299522 - ORR1D1-int LTR MaLR -4 1366 1 4 1231 1454 235 82 12 chr9 84776654 84776994 -39299178 - ORR1D1 LTR MaLR -8 366 3 4 1231 407 321 15 20 chr9 84777339 84777536 -39298636 + RLTR15 LTR ERVK 1 196 -163 4 1231 2857 12 0 0 chr9 84777536 84777858 -39298314 + RLTRETN_Mm LTR ERVK 1 322 0 4 1231 27482 77 26 25 chr9 84777858 84781198 -39294974 + MMETn-int LTR ERVK 1 3923 -3483 4 1231 181 291 50 12 chr9 84781198 84781278 -39294894 + L3 LINE CR1 3025 3107 -1382 4 1231 27482 77 26 25 chr9 84781278 84784151 -39292021 + MMETn-int LTR ERVK 3924 7299 -107 4 1231 2778 9 16 0 chr9 84784151 84784468 -39291704 + RLTRETN_Mm LTR ERVK 1 322 0 4 1231 393 271 31 37 chr9 84784468 84784629 -39291543 + RLTR15 LTR ERVK 191 350 -9 4 1231 198 232 0 97 chr9 84784784 84784846 -39291326 + MIRm SINE MIR 219 274 -2 4 1231 583 50 50 0 chr9 84785067 84785167 -39291005 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 4 1231 301 341 22 0 chr9 84785653 84785744 -39290428 - RSINE1 SINE B4 -6 159 67 4 1231 521 295 110 92 chr9 84787678 84788006 -39288166 - ORR1E LTR MaLR -5 354 21 4 1231 26 0 0 0 chr9 84788834 84788860 -39287312 + AT_rich Low_complexity Low_complexity 1 26 0 4 1231 1575 204 82 13 chr9 84790499 84790891 -39285281 + MTC LTR MaLR 3 421 0 4 1231 2439 286 40 60 chr9 84791084 84791924 -39284248 + Lx5 LINE L1 6203 7026 -24 4 1231 225 0 0 0 chr9 84791925 84791950 -39284222 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 4 1231 625 135 12 18 chr9 84792123 84792289 -39283883 + (TA)n Simple_repeat Simple_repeat 2 166 0 4 1231 264 59 0 0 chr9 84792519 84792553 -39283619 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1231 438 162 50 0 chr9 84792553 84792652 -39283520 - Lx5 LINE L1 -19 7031 6928 4 1231 244 292 0 40 chr9 84792671 84792746 -39283426 - RMER6B LTR ERVK -22 439 368 4 1231 221 125 62 0 chr9 84792917 84792965 -39283207 + GA-rich Low_complexity Low_complexity 3 53 0 4 1231 254 310 185 27 chr9 84794198 84794420 -39281752 - L2 LINE L2 -453 2966 2710 4 1231 481 255 88 96 chr9 84794500 84794843 -39281329 - Charlie5 DNA MER1_type -53 2571 2232 4 1231 23 68 0 0 chr9 84795220 84795264 -39280908 + AT_rich Low_complexity Low_complexity 1 44 0 4 1231 705 297 0 6 chr9 84795454 84795637 -39280535 - B3A SINE B2 -16 182 1 4 1231 303 335 65 56 chr9 84795790 84796005 -39280167 - MIR SINE MIR -33 229 13 4 1231 286 242 25 75 chr9 84796270 84796431 -39279741 - Lx9 LINE L1 0 7644 7492 4 1231 212 385 9 46 chr9 84796634 84796743 -39279429 + L3 LINE CR1 3902 4006 -483 4 1231 1282 241 56 42 chr9 84797232 84797591 -39278581 - ORR1D1 LTR MaLR -8 366 3 4 1231 1753 102 18 28 chr9 84797633 84797917 -39278255 + Lx3_Mus LINE L1 6729 7009 0 4 1231 24 53 0 0 chr9 84800747 84800785 -39275387 + AT_rich Low_complexity Low_complexity 1 38 0 4 1231 678 245 14 0 chr9 84800796 84800935 -39275237 + B1_Mur3 SINE Alu 1 141 -8 4 1231 1640 176 73 39 chr9 84801818 84802090 -39274082 + ORR1B2 LTR MaLR 1 289 -78 4 1231 2525 199 45 63 chr9 84802090 84802711 -39273461 + RMER19C LTR ERVK 2 611 0 4 1231 1640 176 73 39 chr9 84802711 84802793 -39273379 + ORR1B2 LTR MaLR 290 367 0 4 1232 221 125 42 0 chr9 84803700 84803748 -39272424 + T-rich Low_complexity Low_complexity 6 55 0 4 1232 950 264 0 5 chr9 84805366 84805575 -39270597 - RMER15 LTR ERVL -133 442 235 4 1232 313 238 87 19 chr9 84805600 84805703 -39270469 - RMER15 LTR ERVL -439 136 27 4 1232 688 310 87 24 chr9 84805780 84806034 -39270138 - B4 SINE B4 -21 271 2 4 1232 24 0 0 0 chr9 84806273 84806297 -39269875 + AT_rich Low_complexity Low_complexity 1 24 0 4 1232 363 121 0 0 chr9 84807666 84807724 -39268448 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1232 185 94 0 30 chr9 84807765 84807798 -39268374 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1232 258 274 0 40 chr9 84808070 84808146 -39268026 - ID4_ SINE ID -10 73 1 4 1232 1820 208 6 12 chr9 84808279 84808615 -39267557 - MTC LTR MaLR -20 401 68 4 1232 482 31 0 15 chr9 84808962 84809027 -39267145 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 1232 913 271 100 3 chr9 84809500 84809841 -39266331 + L1M4 LINE L1 5257 5630 -548 4 1232 250 300 29 29 chr9 84809868 84809971 -39266201 + LTR55 LTR ERV 23 125 -423 4 1232 1824 152 22 3 chr9 84810276 84810587 -39265585 + ORR1A3 LTR MaLR 2 318 -8 4 1232 252 348 54 33 chr9 84810948 84811132 -39265040 + LTR55 LTR ERV 225 412 -136 4 1232 365 436 49 15 chr9 84811297 84811502 -39264670 + L1MDb LINE L1 195 406 -6003 4 1232 23 105 0 0 chr9 84811912 84811998 -39264174 + AT_rich Low_complexity Low_complexity 1 86 0 4 1232 1631 167 94 15 chr9 84812476 84812816 -39263356 + ORR1B2 LTR MaLR 1 367 0 4 1232 657 0 0 0 chr9 84813537 84813610 -39262562 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 4 1232 211 211 0 0 chr9 84813611 84813649 -39262523 + (CATA)n Simple_repeat Simple_repeat 4 41 0 4 1232 207 0 0 0 chr9 84816377 84816400 -39259772 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1232 249 319 235 0 chr9 84816582 84816701 -39259471 + B1_Mur3 SINE Alu 3 149 0 4 1232 376 78 15 30 chr9 84816702 84816768 -39259404 + (GAAAA)n Simple_repeat Simple_repeat 3 67 0 4 1232 1156 68 0 14 chr9 84816931 84817079 -39259093 - B1_Mus1 SINE Alu -1 147 2 4 1232 30 45 0 0 chr9 84817260 84817304 -39258868 + AT_rich Low_complexity Low_complexity 1 44 0 4 1232 618 51 0 0 chr9 84818709 84818787 -39257385 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 1232 21 0 0 0 chr9 84818801 84818822 -39257350 + AT_rich Low_complexity Low_complexity 1 21 0 4 1232 2207 151 45 2 chr9 84819182 84819580 -39256592 - Lx4B LINE L1 -930 6128 5714 4 1232 3222 187 18 20 chr9 84819572 84819944 -39256228 + Lx4B LINE L1 6111 6484 -574 4 1232 833 179 44 6 chr9 84819944 84820124 -39256048 - Lx4B LINE L1 -7 7051 6865 4 1232 3222 187 18 20 chr9 84820124 84820405 -39255767 + Lx4B LINE L1 6485 6763 -295 4 1232 459 0 0 0 chr9 84820448 84820499 -39255673 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1232 221 378 36 31 chr9 84820944 84821138 -39255034 - L2a LINE L2 -268 3158 2964 4 1232 204 304 0 0 chr9 84821581 84821637 -39254535 - L2a LINE L2 -570 2849 2794 4 1232 203 184 0 0 chr9 84821643 84821681 -39254491 + (TTAA)n Simple_repeat Simple_repeat 4 41 0 4 1232 6298 35 1 1 chr9 84822281 84823136 -39253036 - L1Md_F3 LINE L1 -631 5953 5100 4 1232 5606 21 9 6 chr9 84823136 84823800 -39252372 + L1Md_F3 LINE L1 5919 6584 0 4 1232 3975 94 74 2 chr9 84823975 84824662 -39251510 - L1_Mus3 LINE L1 0 6638 5990 4 1232 283 249 67 176 chr9 84824740 84824950 -39251222 - RMER15 LTR ERVL -388 187 1 4 1232 727 250 186 46 chr9 84825111 84825434 -39250738 + RLTR9A LTR ERVK 1 368 0 4 1232 248 265 0 0 chr9 84826234 84826302 -39249870 + GA-rich Low_complexity Low_complexity 2 69 0 4 1232 1630 202 83 53 chr9 84827394 84827827 -39248345 + RLTR41 LTR ERV1 1 446 0 4 1232 225 255 0 18 chr9 84828018 84828074 -39248098 + CT-rich Low_complexity Low_complexity 3 57 0 4 1232 222 343 30 20 chr9 84828074 84828175 -39247997 + L2c LINE L2 3268 3369 -18 4 1232 526 268 7 80 chr9 84828593 84828743 -39247429 + B1F2 SINE Alu 2 140 -9 4 1232 1416 235 44 3 chr9 84828806 84829126 -39247046 - Lx6 LINE L1 -1001 6459 6127 4 1232 189 74 0 0 chr9 84829222 84829249 -39246923 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1232 986 123 0 14 chr9 84829504 84829652 -39246520 + B1_Mus2 SINE Alu 2 147 0 4 1232 623 78 0 10 chr9 84829654 84829758 -39246414 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 4 1232 914 324 143 24 chr9 84830520 84831011 -39245161 - MER89 LTR ERV1 -10 549 1 4 1232 602 343 30 0 chr9 84831089 84831258 -39244914 + B3A SINE B2 2 175 -23 4 1232 330 26 0 0 chr9 84831259 84831298 -39244874 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1232 37 62 0 0 chr9 84831301 84831366 -39244806 + AT_rich Low_complexity Low_complexity 1 65 0 4 1232 1310 331 76 24 chr9 84831975 84832739 -39243433 + Lx9 LINE L1 6626 7429 -215 4 1232 474 101 0 0 chr9 84833345 84833414 -39242758 + (TCTG)n Simple_repeat Simple_repeat 1 69 0 4 1232 897 28 0 0 chr9 84833415 84833523 -39242649 + (TC)n Simple_repeat Simple_repeat 2 109 0 4 1232 225 0 0 0 chr9 84833523 84833547 -39242625 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1232 441 0 0 0 chr9 84834326 84834375 -39241797 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1232 369 0 0 0 chr9 84834375 84834415 -39241757 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1232 340 94 46 15 chr9 84834949 84835014 -39241158 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 4 1232 22 56 0 0 chr9 84835737 84835773 -39240399 + AT_rich Low_complexity Low_complexity 1 36 0 4 1232 463 315 149 23 chr9 84835818 84836120 -39240052 - Lx8 LINE L1 -87 7386 7047 4 1232 200 349 132 0 chr9 84836319 84836425 -39239747 + MIRm SINE MIR 1 120 -156 4 1232 354 281 0 0 chr9 84836617 84836731 -39239441 + CT-rich Low_complexity Low_complexity 1 114 0 4 1232 477 0 0 0 chr9 84838211 84838264 -39237908 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1232 449 170 37 214 chr9 84838367 84838666 -39237506 - Lx9 LINE L1 -8 7636 7391 4 1232 2324 234 81 19 chr9 84838790 84839665 -39236507 + Lx9 LINE L1 6161 7200 -444 4 1232 1054 88 0 0 chr9 84840320 84840456 -39235716 + B1_Mm SINE Alu 2 137 -10 4 1232 760 104 0 0 chr9 84841545 84841660 -39234512 + L1_Mus1 LINE L1 6453 6567 0 4 1232 291 323 106 0 chr9 84842902 84843063 -39233109 - L3 LINE CR1 -440 4049 3872 4 1232 423 38 0 0 chr9 84843828 84843881 -39232291 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1232 2514 90 33 0 chr9 84844682 84845050 -39231122 - Lx3_Mus LINE L1 -900 6109 5730 5 1232 5406 98 38 23 chr9 84845050 84845869 -39230303 + Lx3_Mus LINE L1 6156 6986 -23 5 1232 324 0 0 0 chr9 84845869 84845905 -39230267 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 5 1232 306 0 0 0 chr9 84848063 84848097 -39228075 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 1232 1087 85 0 0 chr9 84848101 84848242 -39227930 - B1_Mus1 SINE Alu -7 141 1 5 1232 267 54 0 0 chr9 84848561 84848598 -39227574 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1232 32 26 0 0 chr9 84849410 84849449 -39226723 + AT_rich Low_complexity Low_complexity 1 39 0 5 1232 351 72 27 55 chr9 84849848 84849921 -39226251 + GA-rich Low_complexity Low_complexity 2 72 0 5 1232 1717 39 0 0 chr9 84850024 84850231 -39225941 + L1_Mus1 LINE L1 6359 6565 -2 5 1232 512 165 35 0 chr9 84850333 84850418 -39225754 + B3A SINE B2 1 88 -110 5 1232 188 366 50 0 chr9 84850695 84850796 -39225376 + L2a LINE L2 2705 2810 -609 5 1232 1933 127 126 3 chr9 84850832 84851086 -39225086 + Lx2 LINE L1 6588 6866 -131 5 1232 183 80 0 0 chr9 84851086 84851111 -39225061 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 5 1232 1933 127 126 3 chr9 84851111 84851197 -39224975 + Lx2 LINE L1 6867 6968 -29 5 1232 287 65 0 21 chr9 84851197 84851244 -39224928 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 5 1232 283 394 58 16 chr9 84851274 84851465 -39224707 + L2a LINE L2 2949 3147 -279 5 1232 21 36 0 0 chr9 84851666 84851694 -39224478 + AT_rich Low_complexity Low_complexity 1 28 0 5 1232 266 106 21 0 chr9 84851884 84851931 -39224241 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1232 432 0 0 0 chr9 84851931 84851978 -39224194 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1232 251 290 95 21 chr9 84852156 84852251 -39223921 - PB1D10 SINE Alu -3 114 13 5 1232 274 364 163 7 chr9 84853121 84853262 -39222910 + RSINE1 SINE B4 1 163 -2 5 1232 276 172 0 0 chr9 84853322 84853380 -39222792 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 5 1232 498 335 67 43 chr9 84853862 84854373 -39221799 + L1MD3 LINE L1 7457 7979 -16 5 1232 211 214 0 51 chr9 84854587 84854646 -39221526 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 5 1232 387 0 0 0 chr9 84854712 84854755 -39221417 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1232 25 51 0 0 chr9 84855800 84855839 -39220333 + AT_rich Low_complexity Low_complexity 1 39 0 5 1232 200 335 73 94 chr9 84856207 84856275 -39219897 + MIRb SINE MIR 74 130 -138 5 1232 1471 169 168 6 chr9 84856275 84856591 -39219581 + ORR1B2 LTR MaLR 1 367 0 5 1232 200 335 73 94 chr9 84856591 84856713 -39219459 + MIRb SINE MIR 131 260 -8 5 1232 4864 211 57 20 chr9 84856751 84857910 -39218262 - Lx2B LINE L1 -1 6999 5798 5 1232 1392 158 22 4 chr9 84857908 84858137 -39218035 + Lx2B LINE L1 5572 5804 -82 5 1232 1752 220 123 9 chr9 84859107 84859547 -39216625 + RLTR11A2 LTR ERVK 2 491 -36 5 1232 560 49 0 35 chr9 84859564 84859649 -39216523 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1232 260 417 96 19 chr9 84861803 84862116 -39214056 + L4 LINE RTE 1235 1571 -458 5 1232 1473 128 84 0 chr9 84863163 84863412 -39212760 - IAPEY3_LTR LTR ERVK -5 327 58 5 1232 235 272 25 31 chr9 84864101 84864264 -39211908 + CT-rich Low_complexity Low_complexity 3 164 0 5 1232 511 370 3 15 chr9 84864268 84864544 -39211628 + T-rich Low_complexity Low_complexity 1 272 0 5 1232 404 219 23 40 chr9 84864545 84864721 -39211451 + CT-rich Low_complexity Low_complexity 6 178 0 5 1232 210 339 0 0 chr9 84864721 84864777 -39211395 + T-rich Low_complexity Low_complexity 5 60 0 5 1232 231 273 8 40 chr9 84864783 84864909 -39211263 + C-rich Low_complexity Low_complexity 1 122 0 5 1232 909 71 14 21 chr9 84864909 84865053 -39211119 + (TTTCC)n Simple_repeat Simple_repeat 3 145 0 5 1232 300 304 56 19 chr9 84865349 84865510 -39210662 + Lx9 LINE L1 5810 5976 -1668 5 1232 1592 301 74 21 chr9 84865795 84866456 -39209716 + Lx8 LINE L1 6105 6800 -673 5 1232 8005 38 5 3 chr9 84868518 84869502 -39206670 - L1Md_F3 LINE L1 -12 6572 5587 5 1232 207 166 0 5 chr9 84869775 84869817 -39206355 - MIR SINE MIR -68 200 156 5 1232 343 191 0 0 chr9 84869817 84869885 -39206287 + MER46C DNA MER2_type 1 68 -270 5 1232 308 265 60 20 chr9 84869906 84869927 -39206245 - PB1D10 SINE Alu -1 116 13 5 1232 318 228 51 0 chr9 84869927 84870006 -39206166 - ID_B1 SINE B4 -48 176 94 5 1232 2114 292 44 29 chr9 84870245 84870944 -39205228 + Lx8 LINE L1 6761 7470 -3 5 1232 21 0 0 0 chr9 84871777 84871798 -39204374 + AT_rich Low_complexity Low_complexity 1 21 0 5 1232 218 270 0 0 chr9 84872094 84872157 -39204015 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 5 1232 555 78 0 0 chr9 84872160 84872237 -39203935 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1232 201 121 0 0 chr9 84872367 84872400 -39203772 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1232 743 243 159 25 chr9 84873178 84873597 -39202575 - Lx9 LINE L1 -7 7637 7121 5 1232 669 307 63 31 chr9 84873719 84874005 -39202167 - Lx8 LINE L1 -170 7303 7009 5 1232 2047 233 91 12 chr9 84874042 84874195 -39201977 + RMER5 LTR ERV1 1 152 -382 5 1232 1964 199 50 5 chr9 84874195 84874594 -39201578 + MTC LTR MaLR 5 421 0 5 1232 2047 233 91 12 chr9 84874594 84874935 -39201237 + RMER5 LTR ERV1 153 534 0 5 1232 309 272 0 0 chr9 84875032 84875124 -39201048 - L1MA4 LINE L1 -440 5860 5769 5 1232 266 132 19 0 chr9 84875124 84875177 -39200995 + CT-rich Low_complexity Low_complexity 2 55 0 5 1232 4776 169 11 19 chr9 84875205 84876062 -39200110 - Lx4B LINE L1 -5 7053 6204 5 1232 306 269 78 56 chr9 84876572 84876714 -39199458 + HAL1 LINE L1 2359 2503 -4 5 1232 325 315 69 64 chr9 84876715 84877029 -39199143 + L1M5 LINE L1 3578 3901 -2245 5 1232 273 277 84 0 chr9 84877081 84877164 -39199008 - PB1D9 SINE Alu 0 120 31 5 1232 544 273 138 11 chr9 84877232 84877421 -39198751 - ID_B1 SINE B4 -9 215 3 5 1232 23 78 0 0 chr9 84878419 84878470 -39197702 + AT_rich Low_complexity Low_complexity 1 51 0 5 1232 213 39 0 0 chr9 84878849 84878875 -39197297 + (TATG)n Simple_repeat Simple_repeat 3 28 0 5 1232 195 42 0 0 chr9 84879005 84879029 -39197143 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1232 1106 84 0 0 chr9 84879035 84879177 -39196995 - B1_Mm SINE Alu -4 143 2 5 1232 999 206 72 83 chr9 84879319 84879581 -39196591 - ORR1D1 LTR MaLR -111 263 1 5 1232 226 182 111 83 chr9 84879581 84879617 -39196555 + MamRep434 DNA TcMar 234 272 -154 5 1232 183 257 98 98 chr9 84880435 84880517 -39195655 + L2c LINE L2 3291 3372 -15 5 1232 180 0 0 0 chr9 84881988 84882008 -39194164 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1232 729 128 21 7 chr9 84883009 84883151 -39193021 - Lx LINE L1 -6 6648 6505 5 1232 613 313 70 84 chr9 84883567 84883926 -39192246 + ORR1E LTR MaLR 1 354 -5 5 1232 201 147 0 0 chr9 84884126 84884160 -39192012 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 5 1232 1404 257 113 58 chr9 84884271 84884750 -39191422 + MTE-int LTR MaLR 1036 1540 -40 5 1232 1016 317 43 12 chr9 84884751 84885077 -39191095 - MTEa LTR MaLR -43 336 1 5 1232 1222 283 90 36 chr9 84885243 84885990 -39190182 + L1MA6 LINE L1 5514 6300 0 5 1232 870 312 57 59 chr9 84886069 84886749 -39189423 - L1MA5 LINE L1 -6 6294 5616 5 1232 22 35 0 0 chr9 84887155 84887184 -39188988 + AT_rich Low_complexity Low_complexity 1 29 0 5 1232 211 71 48 0 chr9 84887392 84887434 -39188738 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1232 1801 142 20 0 chr9 84887434 84887730 -39188442 - L1_Mus3 LINE L1 -6 6632 6331 5 1232 7146 15 0 0 chr9 84887730 84888547 -39187625 + L1Md_T LINE L1 4770 5586 -297 5 1232 8251 41 0 0 chr9 84888547 84889590 -39186582 + L1Md_T LINE L1 5587 6582 0 5 1232 27161 115 8 10 chr9 84889594 84891176 -39184996 - L1_Mus3 LINE L1 -306 6332 4731 5 1232 230 0 33 0 chr9 84891176 84891206 -39184966 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1232 27161 146 20 20 chr9 84891206 84895583 -39180589 - L1_Mus3 LINE L1 -1153 4730 379 5 1232 303 28 0 0 chr9 84895715 84895751 -39180421 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1232 180 0 0 0 chr9 84895751 84895770 -39180402 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1232 423 0 0 0 chr9 84895770 84895816 -39180356 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1232 6054 174 19 15 chr9 84897584 84898722 -39177450 - Lx2 LINE L1 0 6997 5855 5 1232 553 322 14 14 chr9 84898765 84898913 -39177259 - B3A SINE B2 -36 162 15 5 1232 207 0 0 0 chr9 84898992 84899015 -39177157 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1232 928 121 50 0 chr9 84899028 84899169 -39177003 - B1_Mus1 SINE Alu 0 148 1 5 1232 279 365 11 23 chr9 84899321 84899408 -39176764 + B1_Mus1 SINE Alu 10 95 -53 5 1232 244 386 51 43 chr9 84899408 84899455 -39176717 + ID_B1 SINE B4 90 224 0 5 1232 1178 48 7 0 chr9 84900998 84901145 -39175027 - B1_Mus1 SINE Alu 0 148 1 5 1232 1078 62 7 27 chr9 84902558 84902706 -39173466 + B1_Mus1 SINE Alu 3 147 -1 5 1232 381 131 0 0 chr9 84902781 84902842 -39173330 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1232 1870 177 100 7 chr9 84902844 84903216 -39172956 - ORR1B1 LTR MaLR -5 389 1 5 1232 252 0 0 0 chr9 84903710 84903738 -39172434 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1232 192 152 0 0 chr9 84904010 84904043 -39172129 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1232 225 0 0 0 chr9 84904160 84904185 -39171987 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 5 1232 195 419 70 61 chr9 84904347 84904576 -39171596 + L2b LINE L2 3005 3235 -140 5 1232 954 18 0 0 chr9 84904848 84904960 -39171212 + (GA)n Simple_repeat Simple_repeat 1 112 0 5 1232 1453 216 94 19 chr9 84905788 84906161 -39170011 - MTD LTR MaLR 0 419 19 5 1232 198 0 0 0 chr9 84906161 84906183 -39169989 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 5 1232 1669 328 59 11 chr9 84906399 84907062 -39169110 - Lx8 LINE L1 -287 7186 6492 5 1232 1108 67 0 0 chr9 84907444 84907579 -39168593 - B1_Mm SINE Alu -12 135 1 5 1232 315 373 12 24 chr9 84910472 84910637 -39165535 - MIR SINE MIR -60 202 40 6 1232 268 337 33 0 chr9 84910637 84910729 -39165443 + ORR1E LTR MaLR 1 95 -264 6 1232 2651 294 46 20 chr9 84911985 84912916 -39163256 + Lx9 LINE L1 6645 7599 -45 6 1232 378 0 0 0 chr9 84912951 84912993 -39163179 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 6 1232 1005 95 7 0 chr9 84913042 84913179 -39162993 + B1_Mus2 SINE Alu 1 138 -9 6 1232 246 32 0 0 chr9 84913179 84913210 -39162962 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1232 51 17 0 0 chr9 84913339 84913397 -39162775 + AT_rich Low_complexity Low_complexity 1 58 0 6 1232 459 365 121 26 chr9 84914251 84914558 -39161614 + MLT1A0 LTR MaLR 20 355 -10 6 1232 1243 93 6 0 chr9 84914773 84914956 -39161216 + L1_Mus2 LINE L1 6383 6566 0 6 1232 189 74 0 0 chr9 84915046 84915073 -39161099 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1232 405 0 0 0 chr9 84915073 84915117 -39161055 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1232 326 320 30 0 chr9 84915245 84915345 -39160827 + B1_Mur2 SINE Alu 42 144 -5 6 1232 23 33 0 0 chr9 84915609 84915639 -39160533 + AT_rich Low_complexity Low_complexity 1 30 0 6 1232 692 57 0 0 chr9 84915744 84915832 -39160340 + L1_Mus1 LINE L1 6258 6345 -222 6 1232 5484 213 46 33 chr9 84915817 84917669 -39158503 + L1_Mur3 LINE L1 754 2636 -3244 6 1232 469 266 183 29 chr9 84917696 84917764 -39158408 + Lx7 LINE L1 7328 7395 -301 6 1232 198 0 0 0 chr9 84917764 84917786 -39158386 + (TA)n Simple_repeat Simple_repeat 1 22 0 6 1232 469 266 183 29 chr9 84917786 84917930 -39158242 + Lx7 LINE L1 7396 7576 -120 6 1232 288 0 0 0 chr9 84917930 84917962 -39158210 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1232 469 275 169 24 chr9 84917962 84918076 -39158096 + Lx7 LINE L1 7577 7678 -18 6 1232 289 331 127 21 chr9 84918823 84918965 -39157207 - MER5B DNA MER1_type -11 167 11 6 1232 1951 125 12 59 chr9 84919124 84919463 -39156709 - ORR1A3 LTR MaLR -3 323 1 6 1232 474 18 0 0 chr9 84920065 84920120 -39156052 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 6 1232 324 182 11 22 chr9 84920255 84920345 -39155827 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 1232 1262 325 82 19 chr9 84920503 84921124 -39155048 - Lx8 LINE L1 -482 6991 6332 6 1232 444 341 112 16 chr9 84921119 84921486 -39154686 + Lx8 LINE L1 7047 7448 -25 6 1232 2627 122 5 2 chr9 84921597 84921992 -39154180 + MYSERV6-int LTR ERVK 500 895 -8064 6 1232 1759 130 24 30 chr9 84921985 84922318 -39153854 + MYSERV6-int LTR ERVK 2205 2535 -6424 6 1232 8090 153 30 35 chr9 84922318 84923874 -39152298 + MYSERV6-int LTR ERVK 3859 5406 -3553 6 1232 967 152 23 0 chr9 84923874 84924047 -39152125 - RLTR19C LTR ERVK -341 165 1 6 1232 525 32 0 0 chr9 84924048 84924111 -39152061 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1232 3416 142 59 5 chr9 84924111 84924722 -39151450 + MYSERV6-int LTR ERVK 7121 7764 -1195 6 1232 2327 173 36 25 chr9 84924725 84925169 -39151003 + RMER6B LTR ERVK 1 449 -12 6 1232 34101 80 4 3 chr9 84925182 84931191 -39144981 - L1Md_F2 LINE L1 -9 6573 563 6 1232 294 359 120 24 chr9 84931213 84931554 -39144618 + Lx8 LINE L1 6962 7329 -144 6 1232 1317 51 0 17 chr9 84931554 84931734 -39144438 + L1Md_F2 LINE L1 6394 6570 -12 6 1232 294 359 120 24 chr9 84931734 84931851 -39144321 + Lx8 LINE L1 7330 7463 -10 6 1232 208 393 41 14 chr9 84932038 84932185 -39143987 - MER5B DNA MER1_type -16 162 12 6 1232 22 0 0 0 chr9 84932460 84932482 -39143690 + AT_rich Low_complexity Low_complexity 1 22 0 6 1232 236 263 0 0 chr9 84932784 84932841 -39143331 - MER53 DNA hAT -5 188 132 6 1232 186 71 0 0 chr9 84932931 84932959 -39143213 + (CCA)n Simple_repeat Simple_repeat 1 28 0 6 1232 421 386 56 17 chr9 84933452 84933631 -39142541 - ID_B1 SINE B4 -38 186 1 6 1233 868 133 256 0 chr9 84934934 84935114 -39141058 + URR1A DNA MER1_type 1 226 0 6 1233 990 339 31 3 chr9 84936211 84936531 -39139641 - MLT1A0 LTR MaLR -12 353 25 6 1233 670 355 77 64 chr9 84936562 84937079 -39139093 - MER74A LTR ERVL -19 539 16 6 1233 962 212 36 31 chr9 84938097 84938321 -39137851 + URR1A DNA MER1_type 2 226 0 6 1233 479 259 73 7 chr9 84939373 84939509 -39136663 - B1_Mur1 SINE Alu -1 148 4 6 1233 195 214 0 22 chr9 84940351 84940405 -39135767 - MIRc SINE MIR -96 172 117 6 1233 182 316 29 87 chr9 84940772 84940876 -39135296 + MIRc SINE MIR 20 117 -151 6 1233 213 39 0 0 chr9 84941484 84941510 -39134662 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 1233 201 24 47 47 chr9 84941641 84941684 -39134488 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1233 21 0 0 0 chr9 84942605 84942626 -39133546 + AT_rich Low_complexity Low_complexity 1 21 0 6 1233 219 376 0 8 chr9 84942720 84942838 -39133334 + (TG)n Simple_repeat Simple_repeat 2 118 0 6 1233 294 319 66 7 chr9 84942895 84943031 -39133141 + RMER15 LTR ERVL 415 558 -17 6 1233 864 298 113 22 chr9 84943059 84943662 -39132510 + L1MA7 LINE L1 5634 6291 0 6 1233 372 88 0 0 chr9 84943837 84943894 -39132278 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 6 1233 4482 170 80 17 chr9 84945868 84946705 -39129467 + RMER19B LTR ERVK 1 890 -12 6 1233 6211 237 24 18 chr9 84946814 84949285 -39126887 - Lx6 LINE L1 0 7460 4969 6 1233 239 233 89 102 chr9 84949603 84949828 -39126344 - Lx7 LINE L1 -1 7695 7474 6 1233 1752 311 30 36 chr9 84949831 84950588 -39125584 - Lx7 LINE L1 -387 7309 6557 6 1233 1105 261 46 23 chr9 84950616 84951004 -39125168 + L1_Mur3 LINE L1 4745 5141 -739 6 1233 207 100 0 0 chr9 84951216 84951246 -39124926 + (CTTA)n Simple_repeat Simple_repeat 1 30 0 6 1233 7954 149 23 6 chr9 84951246 84953051 -39123121 - Lx4B LINE L1 -4 7054 5215 6 1233 338 232 0 0 chr9 84953120 84953189 -39122983 + B3A SINE B2 1 69 -129 6 1233 394 256 94 0 chr9 84954124 84954284 -39121888 - L1M3 LINE L1 -776 5515 5341 6 1233 659 272 98 28 chr9 84954326 84954753 -39121419 - L1M3 LINE L1 -894 5246 4790 6 1233 688 256 0 67 chr9 84954997 84955206 -39120966 + Lx7 LINE L1 6222 6416 -1280 6 1233 416 92 0 0 chr9 84955209 84955274 -39120898 + Lx LINE L1 5908 5972 -682 6 1233 25967 62 2 0 chr9 84955458 84958966 -39117206 + L1Md_F2 LINE L1 2071 5586 -297 6 1233 8007 50 2 2 chr9 84958966 84959962 -39116210 + L1Md_F2 LINE L1 5587 6582 0 6 1233 204 40 0 0 chr9 84960559 84960584 -39115588 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1233 483 250 11 149 chr9 84962469 84962657 -39113515 - RSINE1 SINE B4 0 165 4 6 1233 183 208 92 115 chr9 84962876 84962963 -39113209 - L2c LINE L2 -12 3375 3291 6 1233 522 0 0 0 chr9 84962964 84963022 -39113150 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 6 1233 4243 166 50 24 chr9 84964640 84965484 -39110688 + Lx3C LINE L1 6109 6974 -2 6 1233 35047 10 13 20 chr9 84965606 84970100 -39106072 + L1Md_A LINE L1 416 4928 -955 6 1233 228 183 46 77 chr9 84970100 84970165 -39106007 - RMER20A LTR ERVK -268 248 186 6 1233 35047 10 13 20 chr9 84970165 84970819 -39105353 + L1Md_A LINE L1 4929 5586 -297 6 1233 8826 12 2 0 chr9 84970819 84971813 -39104359 + L1Md_A LINE L1 5587 6582 0 6 1233 702 325 57 73 chr9 84972262 84972487 -39103685 + MER21B LTR ERV1 1 233 -630 6 1233 231 61 0 0 chr9 84972487 84972520 -39103652 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1233 576 0 0 0 chr9 84972523 84972587 -39103585 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1233 702 325 57 73 chr9 84972587 84972726 -39103446 + MER21B LTR ERV1 234 360 -503 6 1233 692 327 129 20 chr9 84972744 84973100 -39103072 + MER21B LTR ERV1 438 832 -31 6 1233 21 0 0 0 chr9 84974387 84974408 -39101764 + AT_rich Low_complexity Low_complexity 1 21 0 6 1233 292 282 82 77 chr9 84974424 84974620 -39101552 - ORR1E LTR MaLR -162 197 1 6 1233 1884 204 50 7 chr9 84974655 84975059 -39101113 + MTC LTR MaLR 1 421 0 6 1233 344 304 17 6 chr9 84975201 84975373 -39100799 + L1MA8 LINE L1 5009 5182 -958 6 1233 917 291 40 6 chr9 84975669 84975990 -39100182 + L1MA8 LINE L1 5398 5729 -562 6 1233 180 186 16 33 chr9 84976072 84976133 -39100039 + GA-rich Low_complexity Low_complexity 1 60 0 6 1233 218 352 53 44 chr9 84976139 84976226 -39099946 + ID_B1 SINE B4 78 165 -59 6 1233 1332 274 30 18 chr9 84976226 84976557 -39099615 + MTD LTR MaLR 1 335 -84 6 1233 233 323 12 48 chr9 84976710 84976876 -39099296 + L1MA8 LINE L1 5865 6024 -267 6 1233 186 209 0 0 chr9 84977901 84977944 -39098228 + CT-rich Low_complexity Low_complexity 1 43 0 6 1233 398 120 13 0 chr9 84977992 84978067 -39098105 + (TCCC)n Simple_repeat Simple_repeat 1 76 0 6 1233 721 181 247 17 chr9 84978168 84978342 -39097830 + B3 SINE B2 2 215 -1 6 1233 26 50 0 0 chr9 84979664 84979704 -39096468 + AT_rich Low_complexity Low_complexity 1 40 0 6 1233 760 111 1 1 chr9 84981413 84981535 -39094637 - L1_Mm LINE L1 -860 5286 5135 6 1233 2975 50 3 26 chr9 84981535 84981924 -39094248 + L1_Mus1 LINE L1 6179 6558 -9 6 1233 311 306 126 60 chr9 84982059 84982226 -39093946 + B3 SINE B2 35 212 -4 6 1233 253 136 30 0 chr9 84983056 84983122 -39093050 + (TTG)n Simple_repeat Simple_repeat 2 69 0 6 1233 309 118 0 0 chr9 84983291 84983342 -39092830 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1233 261 0 0 0 chr9 84983360 84983389 -39092783 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 1233 327 325 117 24 chr9 84983455 84983660 -39092512 - B4A SINE B4 -64 228 5 6 1233 196 91 22 22 chr9 84983805 84983850 -39092322 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1233 315 326 48 28 chr9 84984853 84984998 -39091174 - B1F1 SINE Alu -1 148 1 6 1233 267 286 0 18 chr9 84985137 84985194 -39090978 + ID4_ SINE ID 2 57 -26 6 1233 1711 52 0 0 chr9 84985915 84986128 -39090044 - L1Md_T LINE L1 0 6582 6370 6 1233 2394 50 0 0 chr9 84986129 84986430 -39089742 + L1Md_F2 LINE L1 6080 6380 -202 6 1233 1103 49 21 0 chr9 84986461 84986605 -39089567 + B1_Mur4 SINE Alu 4 150 0 6 1233 414 0 0 0 chr9 84986619 84986665 -39089507 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 6 1233 1011 314 32 25 chr9 84986753 84987191 -39088981 - Lx8 LINE L1 -144 7329 6889 6 1233 361 299 86 8 chr9 84987200 84987328 -39088844 - MER31A LTR ERV1 -46 439 302 6 1233 180 0 0 0 chr9 84987333 84987353 -39088819 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1233 7257 31 0 0 chr9 84987389 84988272 -39087900 + MERVL-int LTR ERVL 4489 5371 -114 6 1233 371 111 26 53 chr9 84988272 84988348 -39087824 + ORR1A3-int LTR MaLR 567 640 -1323 7 1233 247 206 83 128 chr9 84988330 84988386 -39087786 + ORR1A3-int LTR MaLR 558 606 -1357 7 1233 3143 16 0 3 chr9 84988386 84988760 -39087412 + MT2_Mm LTR ERVL 1 373 -120 7 1233 460 297 164 23 chr9 84988769 84988983 -39087189 - MER31A LTR ERV1 -241 244 1 6 1233 26 0 0 0 chr9 84991517 84991543 -39084629 + AT_rich Low_complexity Low_complexity 1 26 0 7 1233 769 57 16 16 chr9 84992323 84992448 -39083724 - L1_Mus3 LINE L1 -4 6634 6510 7 1233 657 291 95 38 chr9 84992548 84992593 -39083579 + ID SINE ID 1 45 -179 7 1233 3474 15 5 0 chr9 84992593 84992987 -39083185 - MTA_Mm LTR MaLR 0 396 1 7 1233 9549 22 0 0 chr9 84992987 84994085 -39082087 - MTA_Mm-int LTR MaLR 0 1098 1 7 1233 3449 18 5 0 chr9 84994085 84994479 -39081693 - MTA_Mm LTR MaLR 0 396 1 7 1233 657 291 95 38 chr9 84994479 84994642 -39081530 + ID_B1 SINE B4 46 221 -3 7 1233 240 35 0 0 chr9 84994712 84994741 -39081431 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1233 410 321 13 19 chr9 84994779 84994938 -39081234 + L1MEf LINE L1 1181 1338 -4904 7 1233 321 68 0 0 chr9 84995514 84995558 -39080614 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1233 247 271 68 68 chr9 84995716 84995950 -39080222 + L1MEf LINE L1 2135 2368 -3778 7 1233 403 320 218 28 chr9 84996681 84997297 -39078875 + L1MC LINE L1 3154 3886 -2260 7 1233 624 259 39 34 chr9 84997383 84997587 -39078585 - B3 SINE B2 -11 205 1 7 1233 1903 194 39 31 chr9 84997915 84998331 -39077841 + MTC LTR MaLR 1 419 -2 7 1233 189 0 0 0 chr9 84998451 84998472 -39077700 + (ATG)n Simple_repeat Simple_repeat 1 21 0 7 1233 763 289 128 33 chr9 85002011 85002558 -39073614 - L1MD3 LINE L1 -45 7950 7352 1 1233 1078 56 0 20 chr9 85004011 85004157 -39072015 + B1_Mm SINE Alu 5 147 0 2 1233 411 93 107 0 chr9 85004207 85004282 -39071890 + Lx LINE L1 6557 6639 -15 3 1233 354 156 0 0 chr9 85004620 85004684 -39071488 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 4 1233 24 67 0 0 chr9 85005034 85005079 -39071093 + AT_rich Low_complexity Low_complexity 1 45 0 5 1233 183 345 162 9 chr9 85005710 85005821 -39070351 + MIR SINE MIR 65 192 -70 6 1233 363 253 67 56 chr9 85006194 85006374 -39069798 + B3A SINE B2 2 183 -15 7 1233 198 0 0 0 chr9 85006599 85006621 -39069551 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1233 356 40 0 20 chr9 85006855 85006906 -39069266 + (TTG)n Simple_repeat Simple_repeat 2 51 0 9 1233 200 265 0 0 chr9 85006916 85006965 -39069207 + CT-rich Low_complexity Low_complexity 2 50 0 1 1233 1316 190 33 69 chr9 85007185 85007608 -39068564 + RMER17C LTR ERVK 3 410 0 1 1233 763 268 25 25 chr9 85008207 85008406 -39067766 + B3 SINE B2 16 214 -2 1 1233 1196 48 0 0 chr9 85008431 85008578 -39067594 + B1_Mm SINE Alu 1 147 0 1 1233 762 22 0 0 chr9 85008580 85008672 -39067500 + (GAA)n Simple_repeat Simple_repeat 2 93 0 1 1233 1844 126 0 7 chr9 85008858 85009130 -39067042 - L1_Mus3 LINE L1 -224 5659 5390 1 1233 5997 79 115 2 chr9 85009128 85009995 -39066177 + L1_Mus3 LINE L1 5663 6627 -11 1 1233 309 151 0 0 chr9 85009995 85010048 -39066124 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1233 481 343 63 0 chr9 85010294 85010437 -39065735 + RSINE1 SINE B4 2 153 -12 1 1233 25 31 0 0 chr9 85010456 85010488 -39065684 + AT_rich Low_complexity Low_complexity 1 32 0 1 1233 528 91 0 0 chr9 85011889 85011977 -39064195 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1233 1456 284 37 15 chr9 85012006 85012460 -39063712 + L1_Rod LINE L1 5384 5847 0 2 1233 2872 68 30 10 chr9 85012651 85013050 -39063122 + MTB_Mm LTR MaLR 1 407 0 2 1233 196 347 76 64 chr9 85013095 85013252 -39062920 - MER5A DNA MER1_type -30 159 1 2 1233 253 235 103 0 chr9 85013839 85013907 -39062265 + ID_B1 SINE B4 83 157 -67 2 1233 1561 228 107 18 chr9 85014024 85014409 -39061763 + MTD LTR MaLR 1 419 0 2 1233 2986 47 13 0 chr9 85015322 85015707 -39060465 + MTA_Mm LTR MaLR 7 396 0 2 1233 231 36 0 0 chr9 85016412 85016440 -39059732 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2 1233 499 324 23 56 chr9 85017779 85017995 -39058177 + MER20 DNA MER1_type 7 215 -4 2 1233 342 267 75 9 chr9 85018398 85018504 -39057668 - HAL1-3A_ME LINE L1 -770 2088 1976 2 1233 676 279 0 25 chr9 85018525 85018687 -39057485 - RSINE1 SINE B4 0 165 8 2 1233 455 293 8 41 chr9 85018884 85019005 -39057167 + RSINE1 SINE B4 49 165 0 3 1233 251 87 43 0 chr9 85019005 85019051 -39057121 + (CAGA)n Simple_repeat Simple_repeat 1 48 0 3 1233 30 0 0 0 chr9 85019052 85019082 -39057090 + AT_rich Low_complexity Low_complexity 1 30 0 3 1233 801 315 64 28 chr9 85019337 85019726 -39056446 + MLT1C LTR MaLR 60 462 -5 3 1233 377 295 48 16 chr9 85020012 85020136 -39056036 - MER45A DNA Tip100 -11 167 40 3 1233 543 206 19 10 chr9 85022663 85022766 -39053406 + B3 SINE B2 1 104 -112 3 1233 3439 15 5 0 chr9 85022836 85023230 -39052942 + MTA_Mm LTR MaLR 1 396 0 3 1233 182 152 68 0 chr9 85024024 85024083 -39052089 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1233 229 309 10 49 chr9 85024251 85024353 -39051819 - Lx9 LINE L1 -384 7260 7163 3 1233 439 310 79 61 chr9 85025243 85025600 -39050572 + MLT1C LTR MaLR 1 363 -27 3 1233 410 336 84 12 chr9 85026441 85026775 -39049397 + L1MC2 LINE L1 5881 6238 -106 4 1233 498 216 0 0 chr9 85027480 85027651 -39048521 + (TG)n Simple_repeat Simple_repeat 2 172 0 4 1233 293 206 10 0 chr9 85028429 85028531 -39047641 + GA-rich Low_complexity Low_complexity 2 104 0 4 1233 201 299 0 0 chr9 85029689 85029776 -39046396 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 1233 1239 7 0 0 chr9 85031318 85031458 -39044714 + (CATATA)n Simple_repeat Simple_repeat 5 144 0 4 1233 236 59 78 0 chr9 85032437 85032488 -39043684 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1233 327 358 54 7 chr9 85032838 85032987 -39043185 - MIRb SINE MIR -111 157 2 4 1233 230 333 43 0 chr9 85033795 85033864 -39042308 + MLT1I LTR MaLR 150 221 -190 4 1233 209 292 96 53 chr9 85035404 85035498 -39040674 - L2 LINE L2 -459 2960 2863 4 1233 600 278 52 109 chr9 85035586 85035796 -39040376 - B3A SINE B2 0 198 1 4 1233 540 179 0 0 chr9 85036465 85036577 -39039595 + GA-rich Low_complexity Low_complexity 1 112 0 5 1233 1124 171 14 23 chr9 85038090 85038305 -39037867 + Lx4A LINE L1 6840 7052 -6 5 1233 204 40 0 0 chr9 85038305 85038330 -39037842 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 5 1233 238 36 0 0 chr9 85038578 85038606 -39037566 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1233 26050 147 32 14 chr9 85038606 85044793 -39031379 - L1_Mus4 LINE L1 0 6636 546 5 1233 198 0 0 0 chr9 85045146 85045168 -39031004 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 1233 763 135 11 22 chr9 85045284 85045466 -39030706 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1233 441 0 0 0 chr9 85046134 85046183 -39029989 + (TTA)n Simple_repeat Simple_repeat 3 51 0 5 1233 4577 119 70 6 chr9 85046192 85046295 -39029877 - Lx3B LINE L1 -3 6970 6846 5 1233 199 21 82 20 chr9 85046295 85046344 -39029828 + (CACCT)n Simple_repeat Simple_repeat 3 54 0 5 1233 4577 119 70 6 chr9 85046344 85046445 -39029727 - Lx3B LINE L1 -128 6845 6724 5 1233 3085 37 0 13 chr9 85046445 85046827 -39029345 - L1Md_F3 LINE L1 -15 6569 6193 6 1233 4577 119 70 6 chr9 85046827 85047347 -39028825 - Lx3B LINE L1 -250 6723 6200 5 1233 423 0 0 0 chr9 85047351 85047398 -39028774 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1233 822 130 0 0 chr9 85047873 85048004 -39028168 + (TCC)n Simple_repeat Simple_repeat 2 132 0 6 1233 1062 90 0 7 chr9 85048176 85048321 -39027851 + B1_Mus1 SINE Alu 4 147 -1 6 1233 23 0 0 0 chr9 85048563 85048586 -39027586 + AT_rich Low_complexity Low_complexity 1 23 0 6 1233 26 30 0 0 chr9 85048905 85048938 -39027234 + AT_rich Low_complexity Low_complexity 1 33 0 6 1233 284 341 54 8 chr9 85049087 85049217 -39026955 - MER110A LTR ERV1 -23 445 310 6 1233 562 330 31 18 chr9 85049573 85049795 -39026377 - MTE-int LTR MaLR -1068 512 288 6 1233 404 288 139 5 chr9 85050583 85050799 -39025373 - L1MA5 LINE L1 0 6300 6056 6 1233 653 221 36 22 chr9 85053184 85053323 -39022849 + B1_Mur2 SINE Alu 2 142 -7 6 1233 1239 89 0 0 chr9 85053353 85053532 -39022640 + (GAA)n Simple_repeat Simple_repeat 2 180 0 7 1233 822 207 0 0 chr9 85053542 85053721 -39022451 + A-rich Low_complexity Low_complexity 1 179 0 7 1233 225 237 17 17 chr9 85053721 85053781 -39022391 + GA-rich Low_complexity Low_complexity 1 60 0 7 1233 321 364 33 0 chr9 85054045 85054196 -39021976 + RSINE1 SINE B4 1 156 -9 7 1233 264 59 0 0 chr9 85054199 85054233 -39021939 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1233 297 0 0 0 chr9 85054233 85054265 -39021907 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1233 35 24 0 0 chr9 85054274 85054316 -39021856 + AT_rich Low_complexity Low_complexity 1 42 0 7 1233 363 288 38 0 chr9 85054910 85055028 -39021144 + B1F1 SINE Alu 5 124 -23 7 1233 228 281 14 7 chr9 85055050 85055190 -39020982 + GA-rich Low_complexity Low_complexity 1 141 0 7 1233 235 237 0 38 chr9 85055456 85055535 -39020637 + T-rich Low_complexity Low_complexity 2 77 0 7 1233 926 271 117 32 chr9 85055549 85055892 -39020280 + MTD LTR MaLR 48 419 0 8 1233 201 147 0 0 chr9 85055947 85055981 -39020191 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1233 245 27 54 0 chr9 85056075 85056112 -39020060 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1233 261 0 0 0 chr9 85056113 85056142 -39020030 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1233 220 384 58 0 chr9 85056146 85056284 -39019888 + MIR SINE MIR 90 235 -27 8 1233 1282 134 46 25 chr9 85057016 85057253 -39018919 + Lx3C LINE L1 6721 6962 -14 8 1233 513 44 0 0 chr9 85057253 85057321 -39018851 + (CATA)n Simple_repeat Simple_repeat 2 69 0 8 1233 297 299 63 0 chr9 85057369 85057496 -39018676 - L1M4 LINE L1 -1126 5020 4886 8 1233 359 291 0 0 chr9 85057952 85058031 -39018141 + B3 SINE B2 131 209 -7 8 1233 193 299 91 33 chr9 85058205 85058326 -39017846 + MIRc SINE MIR 38 165 -103 8 1233 198 0 0 0 chr9 85058465 85058487 -39017685 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1233 1113 89 0 0 chr9 85058487 85058633 -39017539 - B1_Mm SINE Alu 0 147 2 9 1233 25 31 0 0 chr9 85058742 85058774 -39017398 + AT_rich Low_complexity Low_complexity 1 32 0 9 1233 255 285 7 66 chr9 85059076 85059229 -39016943 + L1M3 LINE L1 5294 5436 -855 9 1233 542 339 87 35 chr9 85059263 85059575 -39016597 - ORR1E LTR MaLR -3 356 29 9 1233 546 231 40 81 chr9 85060075 85060273 -39015899 + Lx5 LINE L1 6861 7050 0 9 1233 226 245 0 19 chr9 85061154 85061208 -39014964 + CT-rich Low_complexity Low_complexity 2 54 0 9 1233 1206 245 115 9 chr9 85061408 85061746 -39014426 - MTD LTR MaLR 0 419 46 9 1233 895 292 60 10 chr9 85062017 85062518 -39013654 - L1_Mur3 LINE L1 -512 5779 5214 9 1233 316 252 72 51 chr9 85063049 85063179 -39012993 - L1M4 LINE L1 -2635 3511 3379 9 1233 3800 105 7 22 chr9 85063179 85063765 -39012407 - Lx2 LINE L1 -2 6995 6419 1 1233 336 153 0 0 chr9 85064980 85065065 -39011107 + (TCTCTG)n Simple_repeat Simple_repeat 6 90 0 1 1233 317 113 19 0 chr9 85065067 85065120 -39011052 - HAL1-3A_ME LINE L1 -830 2028 1975 1 1233 208 222 8 45 chr9 85065124 85065140 -39011032 + (TCTG)n Simple_repeat Simple_repeat 3 18 0 1 1233 966 107 0 0 chr9 85065140 85065317 -39010855 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1233 208 222 8 45 chr9 85065317 85065354 -39010818 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 1 1233 861 128 0 0 chr9 85065354 85065534 -39010638 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1233 208 222 8 45 chr9 85065534 85065611 -39010561 + (TCTG)n Simple_repeat Simple_repeat 1 73 0 1 1234 312 272 69 16 chr9 85065885 85066098 -39010074 - L1MA5A LINE L1 -418 5879 5657 1 1234 289 320 107 23 chr9 85066365 85066627 -39009545 + MER66-int LTR ERV1 6370 6653 -23 1 1234 268 389 20 20 chr9 85068113 85068260 -39007912 - LTR85a LTR Gypsy? -536 166 20 1 1234 207 0 0 0 chr9 85068314 85068337 -39007835 + (CAG)n Simple_repeat Simple_repeat 1 23 0 1 1234 7512 97 27 3 chr9 85068604 85070077 -39006095 - L1_Mus1 LINE L1 0 6567 5039 1 1234 10842 73 6 0 chr9 85070077 85071526 -39004646 + L1_Mus1 LINE L1 3583 5040 -843 1 1234 204 370 33 0 chr9 85071970 85072062 -39004110 + L2c LINE L2 3280 3374 -13 1 1234 195 100 0 0 chr9 85072062 85072092 -39004080 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1 1234 181 255 104 110 chr9 85072096 85072259 -39003913 + L3 LINE CR1 4179 4340 -149 1 1234 4603 116 20 0 chr9 85072471 85073169 -39003003 - Lx3A LINE L1 -7 6974 6263 1 1234 1083 172 133 67 chr9 85073223 85073553 -39002619 - Lx9 LINE L1 -15 7629 7278 1 1234 777 261 66 0 chr9 85073551 85073762 -39002410 + Lx9 LINE L1 7046 7270 -374 1 1234 540 313 58 37 chr9 85074527 85074822 -39001350 + MER31A LTR ERV1 5 305 -180 1 1234 311 121 17 0 chr9 85074957 85075015 -39001157 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1234 946 140 6 6 chr9 85075372 85075552 -39000620 + CT-rich Low_complexity Low_complexity 1 180 0 1 1234 439 294 0 44 chr9 85076609 85076723 -38999449 - B4 SINE B4 -14 278 170 1 1234 295 212 24 36 chr9 85077837 85077920 -38998252 + L1MC1 LINE L1 5447 5528 -816 1 1234 340 49 32 32 chr9 85077958 85078021 -38998151 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 1 1234 399 106 0 0 chr9 85078021 85078086 -38998086 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1234 313 357 38 61 chr9 85078139 85078351 -38997821 - B4A SINE B4 -59 233 27 1 1234 260 342 30 34 chr9 85078407 85078552 -38997620 - ID4_ SINE ID -9 143 2 1 1234 1112 307 81 10 chr9 85078563 85079166 -38997006 + L1MC1 LINE L1 5588 6233 -100 1 1234 339 342 18 84 chr9 85079397 85079563 -38996609 - B4A SINE B4 -122 170 16 1 1234 22 0 0 0 chr9 85079869 85079891 -38996281 + AT_rich Low_complexity Low_complexity 1 22 0 1 1234 189 0 0 0 chr9 85080396 85080417 -38995755 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1234 365 304 0 7 chr9 85081126 85081250 -38994922 + CT-rich Low_complexity Low_complexity 13 135 0 1 1234 207 0 0 0 chr9 85081250 85081273 -38994899 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1234 365 304 0 7 chr9 85081273 85081284 -38994888 + polypyrimidine Low_complexity Low_complexity 2 12 0 1 1234 362 285 33 53 chr9 85081337 85081473 -38994699 - L1MA4 LINE L1 -375 5925 5792 1 1234 232 354 24 54 chr9 85081473 85081640 -38994532 + RSINE1 SINE B4 2 163 -2 1 1234 362 285 33 53 chr9 85081640 85081655 -38994517 - L1MA4 LINE L1 -509 5791 5777 1 1234 749 299 82 3 chr9 85081712 85082028 -38994144 + L1M2 LINE L1 3883 4223 -1920 1 1234 399 286 161 48 chr9 85082074 85082221 -38993951 + B3 SINE B2 9 183 -33 1 1234 189 0 0 0 chr9 85082229 85082250 -38993922 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1234 297 0 0 0 chr9 85082276 85082309 -38993863 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1234 579 318 6 50 chr9 85082416 85082575 -38993597 - B3A SINE B2 -16 182 31 1 1234 338 230 159 101 chr9 85082626 85082771 -38993401 + L1MC2 LINE L1 6102 6271 -73 1 1234 387 60 0 0 chr9 85082771 85082821 -38993351 + (CTTG)n Simple_repeat Simple_repeat 2 51 0 1 1234 338 230 159 101 chr9 85082821 85082883 -38993289 + L1MC2 LINE L1 6272 6320 -24 1 1234 3569 139 5 27 chr9 85083241 85083838 -38992334 + MT2B2 LTR ERVL 1 584 0 1 1234 1725 259 42 10 chr9 85084206 85084611 -38991561 + Lx5 LINE L1 6625 7042 -8 1 1234 414 0 0 0 chr9 85084636 85084682 -38991490 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1234 5557 146 19 4 chr9 85085083 85086197 -38989975 + Lx LINE L1 5379 6508 -146 1 1234 308 261 43 0 chr9 85086231 85086323 -38989849 - L1MA4 LINE L1 -540 5772 5677 1 1234 922 155 122 0 chr9 85086320 85086501 -38989671 - Lx2 LINE L1 0 6997 6795 1 1234 3095 165 7 4 chr9 85086501 85087060 -38989112 + L1_Mur2 LINE L1 4881 5441 -436 1 1234 476 261 16 62 chr9 85087058 85087099 -38989073 - L1MA4 LINE L1 -613 5687 5647 1 1234 3379 33 5 0 chr9 85087099 85087491 -38988681 - MTA_Mm LTR MaLR 0 396 3 1 1234 8391 56 19 2 chr9 85087493 85088572 -38987600 - MTA_Mm-int LTR MaLR 0 1098 1 1 1234 3410 43 0 0 chr9 85088572 85088968 -38987204 - MTA_Mm LTR MaLR 0 396 1 1 1234 476 261 16 62 chr9 85088968 85089114 -38987058 - L1MA4 LINE L1 -654 5646 5506 1 1234 363 285 59 17 chr9 85089138 85089280 -38986892 - Lx9 LINE L1 -5 7639 7489 1 1234 478 43 29 0 chr9 85089280 85089349 -38986823 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 1234 363 285 59 17 chr9 85089349 85089445 -38986727 - Lx9 LINE L1 -156 7488 7392 1 1234 407 270 42 1 chr9 85090023 85090223 -38985949 - L1MA4 LINE L1 -368 5932 5721 1 1234 382 288 8 106 chr9 85091610 85091742 -38984430 + RSINE1 SINE B4 4 122 -43 1 1234 348 127 0 0 chr9 85091757 85091812 -38984360 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1234 435 106 0 0 chr9 85091888 85091954 -38984218 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1234 29 0 0 0 chr9 85093969 85093998 -38982174 + AT_rich Low_complexity Low_complexity 1 29 0 1 1234 416 19 19 0 chr9 85094298 85094351 -38981821 + (TAA)n Simple_repeat Simple_repeat 3 56 0 1 1234 538 319 44 0 chr9 85094390 85094641 -38981531 + Lx8 LINE L1 984 1245 -6483 1 1234 9481 233 206 29 chr9 85094738 85096772 -38979400 + Lx8 LINE L1 1323 3785 -2095 1 1234 1049 133 0 11 chr9 85096772 85096954 -38979218 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1234 9481 233 206 29 chr9 85096954 85097546 -38978626 + Lx8 LINE L1 3786 4628 -1252 1 1234 306 0 0 0 chr9 85097546 85097580 -38978592 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1234 9481 260 177 39 chr9 85097580 85099574 -38976598 + Lx8 LINE L1 4629 6692 -781 1 1234 24 32 0 0 chr9 85100267 85100298 -38975874 + AT_rich Low_complexity Low_complexity 1 31 0 1 1234 40 21 0 0 chr9 85101247 85101294 -38974878 + AT_rich Low_complexity Low_complexity 1 47 0 1 1234 429 20 0 0 chr9 85101579 85101629 -38974543 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1234 1126 95 0 0 chr9 85101709 85101856 -38974316 + B1_Mus2 SINE Alu 1 147 0 1 1234 252 86 0 0 chr9 85102326 85102361 -38973811 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1 1234 1383 288 40 28 chr9 85102361 85102560 -38973612 + MTD LTR MaLR 19 212 -207 1 1234 2223 222 68 22 chr9 85102560 85103144 -38973028 + RMER19C LTR ERVK 1 611 0 1 1234 1383 288 40 28 chr9 85103144 85103340 -38972832 + MTD LTR MaLR 213 419 0 1 1234 330 26 0 0 chr9 85103528 85103567 -38972605 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1234 212 356 80 13 chr9 85103657 85103808 -38972364 + MIRc SINE MIR 108 268 0 1 1234 683 270 70 15 chr9 85104252 85104451 -38971721 + B3 SINE B2 7 216 0 1 1234 219 162 0 0 chr9 85104872 85104909 -38971263 + CT-rich Low_complexity Low_complexity 4 40 0 1 1234 518 82 12 0 chr9 85104909 85104994 -38971178 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1234 249 289 12 24 chr9 85104994 85105079 -38971093 + CT-rich Low_complexity Low_complexity 3 86 0 1 1234 1819 196 15 65 chr9 85105447 85105845 -38970327 - ORR1C1 LTR MaLR 0 378 1 1 1234 374 254 97 48 chr9 85107191 85107336 -38968836 + MTE2a LTR MaLR 1 152 -267 1 1234 1027 228 37 23 chr9 85107346 85107607 -38968565 + Lx4B LINE L1 6700 6952 -106 1 1234 749 244 70 37 chr9 85107652 85107895 -38968277 + MTE2a LTR MaLR 129 379 0 1 1234 5005 52 0 3 chr9 85109564 85110187 -38965985 - L1Md_F2 LINE L1 -5 6577 5957 1 1234 1309 143 21 17 chr9 85110267 85110508 -38965664 - Lx3C LINE L1 -1 6975 6734 1 1234 980 274 56 70 chr9 85111088 85111445 -38964727 + ORR1E LTR MaLR 4 355 -4 1 1234 414 0 0 0 chr9 85111791 85111837 -38964335 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1234 1735 339 61 21 chr9 85111876 85112793 -38963379 - Lx9 LINE L1 -224 7420 6467 1 1234 279 120 0 74 chr9 85113287 85113341 -38962831 + MT2B2 LTR ERVL 535 584 0 1 1234 312 67 50 0 chr9 85113837 85113897 -38962275 + (TTG)n Simple_repeat Simple_repeat 2 64 0 1 1234 189 330 0 85 chr9 85116075 85116181 -38959991 + L3 LINE CR1 2840 2936 -1553 1 1234 525 306 77 57 chr9 85116324 85116518 -38959654 + B3A SINE B2 1 198 0 1 1234 1187 125 11 0 chr9 85116518 85116694 -38959478 + B2_Mm1t SINE B2 2 179 -14 1 1234 299 144 316 18 chr9 85116761 85116875 -38959297 + B2_Mm2 SINE B2 48 195 0 1 1234 7990 137 47 1 chr9 85116939 85118509 -38957663 - Lx2 LINE L1 0 6997 5361 1 1234 203 316 77 26 chr9 85119172 85119289 -38956883 + L2 LINE L2 2419 2541 -878 1 1234 384 290 45 22 chr9 85119784 85119918 -38956254 + B1F SINE Alu 1 137 -12 1 1234 438 331 26 0 chr9 85120006 85120160 -38956012 + RSINE1 SINE B4 2 159 -6 1 1234 498 33 0 0 chr9 85121362 85121422 -38954750 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1234 272 127 0 18 chr9 85121441 85121497 -38954675 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1234 396 0 0 0 chr9 85121509 85121553 -38954619 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1234 1948 237 98 80 chr9 85121584 85122308 -38953864 - Lx7 LINE L1 -350 7346 6610 1 1234 227 297 45 124 chr9 85122311 85122488 -38953684 + RLTR13D6 LTR ERVK 506 668 -234 1 1234 1137 239 127 11 chr9 85122488 85122835 -38953337 - Lx7 LINE L1 -1271 6425 6039 1 1234 301 303 0 29 chr9 85123911 85124013 -38952159 - MLT1D LTR MaLR -4 501 403 1 1234 2760 282 174 30 chr9 85124187 85126115 -38950057 + Lx8 LINE L1 1733 3789 -2091 1 1234 590 71 12 0 chr9 85126115 85126199 -38949973 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 1 1234 2760 282 174 30 chr9 85126199 85126771 -38949401 + Lx8 LINE L1 3790 4591 -1289 1 1234 469 99 12 12 chr9 85126856 85126938 -38949234 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 1234 714 248 4 38 chr9 85127254 85127489 -38948683 + Lx8 LINE L1 4617 4843 -1037 1 1234 2549 269 28 12 chr9 85127538 85127867 -38948305 - Lx6 LINE L1 -11 7449 7118 1 1234 459 0 0 0 chr9 85127867 85127918 -38948254 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1234 2549 269 28 12 chr9 85127918 85128275 -38947897 - Lx6 LINE L1 -343 7117 6753 1 1234 2748 296 38 16 chr9 85128283 85129856 -38946316 + Lx8 LINE L1 4866 6489 -984 1 1234 576 290 75 19 chr9 85129838 85130052 -38946120 + Lx8 LINE L1 7132 7357 -116 1 1234 299 75 0 0 chr9 85130797 85130837 -38945335 - Lx LINE L1 -962 5692 5653 2 1234 1793 103 8 4 chr9 85130837 85131100 -38945072 + Lx LINE L1 6391 6654 0 2 1234 399 294 48 0 chr9 85132281 85132407 -38943765 - ID_B1 SINE B4 -6 218 87 2 1234 21 0 0 0 chr9 85132506 85132527 -38943645 + AT_rich Low_complexity Low_complexity 1 21 0 2 1234 22 56 0 0 chr9 85133159 85133195 -38942977 + AT_rich Low_complexity Low_complexity 1 36 0 2 1234 798 11 0 0 chr9 85133985 85134076 -38942096 + (TC)n Simple_repeat Simple_repeat 2 92 0 2 1234 405 0 0 0 chr9 85134076 85134120 -38942052 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1234 1931 172 195 43 chr9 85134663 85135192 -38940980 + RMER19C LTR ERVK 3 611 0 2 1234 1407 46 0 0 chr9 85135959 85136134 -38940038 + (GGAGAA)n Simple_repeat Simple_repeat 3 177 0 2 1234 702 0 0 0 chr9 85136134 85136212 -38939960 + (GAA)n Simple_repeat Simple_repeat 3 80 0 2 1234 3477 166 52 101 chr9 85137934 85138589 -38937583 - RMER17A2 LTR ERVK 0 958 330 2 1234 4573 67 10 0 chr9 85138589 85139174 -38936998 + L1_Mus1 LINE L1 5977 6567 0 2 1234 3477 151 27 78 chr9 85139174 85139529 -38936643 - RMER17A2 LTR ERVK -577 329 1 2 1234 23 54 0 0 chr9 85139767 85139804 -38936368 + AT_rich Low_complexity Low_complexity 1 37 0 2 1234 324 70 0 0 chr9 85139864 85139907 -38936265 + (CCCCCT)n Simple_repeat Simple_repeat 6 48 0 2 1234 349 129 14 14 chr9 85140238 85140309 -38935863 + CT-rich Low_complexity Low_complexity 1 71 0 2 1234 486 0 0 0 chr9 85142168 85142222 -38933950 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1234 824 295 56 27 chr9 85142647 85142985 -38933187 - RMER15-int LTR ERVL -4022 977 630 2 1234 438 250 42 0 chr9 85142993 85143089 -38933083 - MTE2b LTR MaLR -274 105 6 2 1234 247 123 0 81 chr9 85143946 85144008 -38932164 + T-rich Low_complexity Low_complexity 5 61 0 2 1234 453 325 104 58 chr9 85144220 85144708 -38931464 + RLTR26 LTR ERVK 22 581 -46 2 1234 237 337 124 11 chr9 85145502 85145688 -38930484 + MER3 DNA MER1_type 2 208 -1 2 1234 3864 115 19 7 chr9 85146123 85146701 -38929471 - Lx3C LINE L1 -8 6968 6384 2 1234 22 35 0 0 chr9 85146737 85146766 -38929406 + AT_rich Low_complexity Low_complexity 1 29 0 2 1234 1986 142 22 41 chr9 85147058 85147424 -38928748 - RLTR15 LTR ERVK 0 359 1 2 1234 389 291 112 87 chr9 85148094 85148406 -38927766 - MLT1A1 LTR MaLR -86 322 3 2 1234 451 251 78 26 chr9 85148776 85149059 -38927113 + L1_Rod LINE L1 4266 4573 -1310 2 1234 284 185 0 0 chr9 85149062 85149116 -38927056 + B3 SINE B2 162 215 -1 2 1234 1008 306 58 52 chr9 85149125 85150234 -38925938 + L1_Rod LINE L1 4764 5867 -13 2 1234 27 0 0 0 chr9 85150461 85150488 -38925684 + AT_rich Low_complexity Low_complexity 1 27 0 2 1234 16608 65 5 0 chr9 85151620 85153887 -38922285 + L1Md_F2 LINE L1 3310 5586 -297 2 1234 7257 46 71 2 chr9 85153889 85154808 -38921364 + L1Md_F2 LINE L1 5589 6570 -12 2 1234 464 48 16 0 chr9 85155874 85155937 -38920235 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2 1234 1016 251 85 55 chr9 85156041 85156404 -38919768 + ORR1D1 LTR MaLR 1 374 0 2 1234 2957 3 0 0 chr9 85156743 85157071 -38919101 - L1Md_T LINE L1 0 6582 6255 2 1234 226 320 58 88 chr9 85157470 85157799 -38918373 - L1ME1 LINE L1 -10 6342 6024 2 1234 229 354 38 14 chr9 85157844 85158056 -38918116 - L1ME1 LINE L1 -447 5905 5689 2 1234 337 322 130 39 chr9 85158215 85158622 -38917550 - L1MD LINE L1 -896 5250 4807 2 1234 242 245 10 78 chr9 85158751 85158853 -38917319 - L1ME1 LINE L1 -1500 4819 4725 2 1234 320 292 112 52 chr9 85159075 85159353 -38916819 - MTEa LTR MaLR -3 376 63 2 1234 229 270 31 16 chr9 85159416 85159480 -38916692 - MTEa LTR MaLR -294 65 1 2 1234 313 274 97 19 chr9 85159608 85159775 -38916397 - L1MD LINE L1 -2014 4132 3956 2 1234 315 281 84 82 chr9 85159875 85160231 -38915941 - L1ME1 LINE L1 -2493 3826 3470 2 1234 347 279 19 13 chr9 85161242 85161398 -38914774 - L1ME1 LINE L1 -3732 2587 2431 2 1234 304 348 117 57 chr9 85161484 85161920 -38914252 + L1MCb LINE L1 43 504 -5541 2 1234 1471 285 130 6 chr9 85161921 85162604 -38913568 + Lx8 LINE L1 6385 7152 -321 2 1234 254 304 11 0 chr9 85162933 85163025 -38913147 - L1ME1 LINE L1 -6195 205 113 2 1234 257 321 65 9 chr9 85163276 85163383 -38912789 + B4A SINE B4 178 290 -2 2 1234 1421 126 124 12 chr9 85163535 85163793 -38912379 + ORR1A2 LTR MaLR 1 287 -40 2 1234 3670 81 35 13 chr9 85163793 85163960 -38912212 - L1_Mus4 LINE L1 -428 6208 6048 2 1234 2950 21 0 3 chr9 85163960 85164293 -38911879 + IAPEY3_LTR LTR ERVK 1 332 0 2 1234 3670 81 35 13 chr9 85164293 85164663 -38911509 - L1_Mus4 LINE L1 -589 6047 5659 2 1234 867 87 7 26 chr9 85164663 85164817 -38911355 + L1_Mus4 LINE L1 6481 6631 -5 2 1234 438 55 0 0 chr9 85164856 85164911 -38911261 + ORR1A2 LTR MaLR 272 326 0 2 1234 3067 194 149 25 chr9 85164912 85165737 -38910435 + ORR1A2-int LTR MaLR 2 928 -1035 2 1234 2883 103 5 30 chr9 85165716 85166148 -38910024 + ORR1A2-int LTR MaLR 1543 1963 0 2 1234 2264 128 0 0 chr9 85166148 85166475 -38909697 + ORR1A2 LTR MaLR 1 327 0 2 1234 314 23 23 0 chr9 85166632 85166675 -38909497 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1234 430 261 69 14 chr9 85166679 85166897 -38909275 + L1MC1 LINE L1 5718 5947 -386 2 1234 545 322 35 17 chr9 85166991 85167222 -38908950 + L1MC1 LINE L1 6080 6314 -19 2 1234 192 412 34 0 chr9 85167254 85167373 -38908799 - MIRc SINE MIR -110 158 36 2 1234 319 272 171 47 chr9 85168372 85168516 -38907656 + B3A SINE B2 3 168 -30 2 1234 789 41 0 0 chr9 85168516 85168613 -38907559 + (TC)n Simple_repeat Simple_repeat 2 98 0 2 1234 319 272 171 47 chr9 85168613 85168638 -38907534 + B3A SINE B2 169 192 -6 2 1234 392 323 78 40 chr9 85169286 85169619 -38906553 - ORR1E LTR MaLR 0 379 3 2 1234 1419 283 26 59 chr9 85169657 85170202 -38905970 - RMER5 LTR ERV1 -5 529 3 2 1234 779 192 0 6 chr9 85171394 85171562 -38904610 + (TA)n Simple_repeat Simple_repeat 1 167 0 2 1234 204 156 22 0 chr9 85171899 85171944 -38904228 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 2 1234 659 115 0 76 chr9 85172059 85172191 -38903981 + RLTR11A2 LTR ERVK 344 465 -62 2 1234 204 40 0 0 chr9 85172634 85172659 -38903513 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 2 1234 21 36 0 0 chr9 85172903 85172931 -38903241 + AT_rich Low_complexity Low_complexity 1 28 0 2 1234 4512 81 11 0 chr9 85173220 85173836 -38902336 + L1_Mus2 LINE L1 5944 6566 0 2 1234 1579 291 86 68 chr9 85174136 85174973 -38901199 - Lx9 LINE L1 -297 7347 6496 2 1234 348 130 0 0 chr9 85174958 85175012 -38901160 + L1_Mur2 LINE L1 5477 5530 -347 2 1234 209 59 59 0 chr9 85175193 85175227 -38900945 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1234 500 200 0 9 chr9 85175818 85175934 -38900238 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 1234 432 0 0 0 chr9 85177011 85177059 -38899113 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1234 3121 161 29 42 chr9 85177059 85177705 -38898467 + L1_Mur3 LINE L1 4642 5279 -601 2 1234 515 176 0 10 chr9 85177705 85177808 -38898364 + Lx2B LINE L1 6889 6990 -10 2 1234 2143 132 0 3 chr9 85177808 85178120 -38898052 - RLTR10E LTR ERVK 0 311 1 2 1234 387 0 0 0 chr9 85178130 85178173 -38897999 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 2 1234 3121 161 29 42 chr9 85178173 85178233 -38897939 + L1_Mur3 LINE L1 5289 5349 -531 2 1234 4480 221 72 58 chr9 85178239 85179557 -38896615 + Lx7 LINE L1 6361 7696 0 2 1234 429 20 0 0 chr9 85180351 85180401 -38895771 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1234 386 102 17 0 chr9 85181397 85181456 -38894716 + ORR1C1 LTR MaLR 1 60 -318 2 1234 895 154 89 36 chr9 85181482 85181511 -38894661 + ORR1C1 LTR MaLR 201 229 -149 2 1234 396 0 0 0 chr9 85181511 85181555 -38894617 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 2 1234 895 154 89 36 chr9 85181555 85181693 -38894479 + ORR1C1 LTR MaLR 230 375 -3 2 1234 379 318 101 60 chr9 85181767 85182015 -38894157 + MTD LTR MaLR 6 263 -156 2 1234 210 224 0 0 chr9 85182015 85182064 -38894108 + CT-rich Low_complexity Low_complexity 4 52 0 2 1234 1814 207 88 61 chr9 85182085 85182630 -38893542 - RLTR31A_Mm LTR ERVK 0 584 25 2 1234 4484 227 91 10 chr9 85182642 85183994 -38892178 - Lx9 LINE L1 -13 7631 6171 2 1234 261 232 202 10 chr9 85184068 85184164 -38892008 + MTD LTR MaLR 265 419 0 2 1234 426 283 122 30 chr9 85185841 85186038 -38890134 + B3 SINE B2 2 216 0 2 1234 221 75 0 24 chr9 85186440 85186481 -38889691 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1234 1054 38 0 0 chr9 85186841 85186973 -38889199 + B1_Mus1 SINE Alu 17 148 0 2 1234 393 160 0 0 chr9 85186975 85187081 -38889091 + A-rich Low_complexity Low_complexity 1 106 0 2 1234 308 366 32 8 chr9 85187600 85187724 -38888448 + MIRb SINE MIR 69 195 -73 2 1234 841 334 129 40 chr9 85188090 85188947 -38887225 + L2 LINE L2 1819 2752 -667 2 1234 210 118 0 0 chr9 85189147 85189181 -38886991 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1234 578 230 55 65 chr9 85189500 85189700 -38886472 - B3A SINE B2 0 198 1 2 1234 250 284 98 43 chr9 85189998 85190212 -38885960 - MIRb SINE MIR 0 262 40 2 1234 441 0 0 0 chr9 85190508 85190557 -38885615 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1234 445 131 24 0 chr9 85190564 85190648 -38885524 + GA-rich Low_complexity Low_complexity 1 86 0 2 1234 350 250 11 43 chr9 85191083 85191175 -38884997 - MTD LTR MaLR -88 331 243 2 1234 1142 279 80 18 chr9 85191180 85191743 -38884429 + L1MA4 LINE L1 5330 5927 -373 2 1234 648 234 217 90 chr9 85191779 85192095 -38884077 - MTC LTR MaLR -22 399 43 2 1234 1161 219 95 26 chr9 85192095 85192400 -38883772 - ORR1D1 LTR MaLR 0 374 49 2 1234 189 0 0 0 chr9 85194161 85194182 -38881990 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1234 218 191 0 106 chr9 85195164 85195211 -38880961 + ID2 SINE ID 1 42 -41 2 1234 419 0 20 0 chr9 85195611 85195662 -38880510 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1235 210 143 0 0 chr9 85196965 85197000 -38879172 + (GGA)n Simple_repeat Simple_repeat 3 37 0 2 1235 1066 168 31 0 chr9 85197404 85197600 -38878572 - Lx4A LINE L1 0 7058 6857 2 1235 243 250 8 46 chr9 85197787 85197917 -38878255 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 2 1235 34 79 0 0 chr9 85197999 85198075 -38878097 + AT_rich Low_complexity Low_complexity 1 76 0 2 1235 885 240 56 42 chr9 85198409 85198622 -38877550 - B3 SINE B2 0 216 1 2 1235 1389 278 14 25 chr9 85199118 85199479 -38876693 - MTE2a LTR MaLR -1 378 22 2 1235 302 250 0 0 chr9 85199857 85199921 -38876251 + LTR16D2 LTR ERVL 506 569 -3 2 1235 26 30 0 0 chr9 85200926 85200959 -38875213 + AT_rich Low_complexity Low_complexity 1 33 0 2 1235 1084 168 108 0 chr9 85201820 85202023 -38874149 + URR1A DNA MER1_type 2 226 0 3 1235 683 269 24 44 chr9 85202463 85202669 -38873503 - B3 SINE B2 -13 203 2 3 1235 225 217 127 28 chr9 85202947 85203018 -38873154 - BLACKJACK DNA AcHobo -1369 1575 1498 3 1235 246 81 0 0 chr9 85203072 85203109 -38873063 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1235 852 340 11 0 chr9 85203119 85203398 -38872774 - B4 SINE B4 -10 282 1 3 1235 297 0 0 0 chr9 85204084 85204117 -38872055 + (TTG)n Simple_repeat Simple_repeat 3 35 0 3 1235 816 170 0 0 chr9 85204117 85204252 -38871920 - B1_Mur1 SINE Alu -12 137 3 3 1235 1266 85 0 0 chr9 85205004 85205181 -38870991 + (GGAGA)n Simple_repeat Simple_repeat 3 179 0 3 1235 280 200 0 24 chr9 85205189 85205271 -38870901 + GA-rich Low_complexity Low_complexity 5 84 0 3 1235 1372 70 11 5 chr9 85205430 85205616 -38870556 - B2_Mm2 SINE B2 -8 187 1 3 1235 411 205 51 0 chr9 85205806 85205884 -38870288 - RMER15 LTR ERVL -493 82 1 3 1235 355 250 57 0 chr9 85206053 85206141 -38870031 + B3A SINE B2 80 172 -26 3 1235 602 89 30 42 chr9 85206320 85206485 -38869687 + (TTTG)n Simple_repeat Simple_repeat 2 164 0 3 1235 507 78 0 0 chr9 85206699 85206776 -38869396 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 3 1235 1029 101 0 33 chr9 85206813 85206966 -38869206 + B1_Mus1 SINE Alu 1 148 0 3 1235 652 80 0 20 chr9 85206967 85207069 -38869103 + (GAA)n Simple_repeat Simple_repeat 2 101 0 3 1235 252 167 0 0 chr9 85207107 85207155 -38869017 + CT-rich Low_complexity Low_complexity 2 49 0 3 1235 1479 234 64 37 chr9 85207255 85207659 -38868513 + MTD LTR MaLR 5 419 0 3 1235 273 118 0 0 chr9 85207950 85208001 -38868171 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 1235 629 105 0 0 chr9 85208560 85208655 -38867517 - L1_Mus3 LINE L1 -361 6277 6183 3 1235 32 57 0 0 chr9 85208887 85208940 -38867232 + AT_rich Low_complexity Low_complexity 1 53 0 3 1235 376 217 20 34 chr9 85208944 85209092 -38867080 + (TA)n Simple_repeat Simple_repeat 1 146 0 3 1235 818 297 76 15 chr9 85209293 85209621 -38866551 + ORR1E LTR MaLR 1 348 -11 3 1235 1839 135 24 13 chr9 85209854 85210169 -38866003 + ORR1A2 LTR MaLR 1 333 -51 3 1235 191 75 0 70 chr9 85210627 85210670 -38865502 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 3 1235 350 286 48 87 chr9 85211423 85211733 -38864439 - L1MC3 LINE L1 -26 7759 7462 3 1235 247 211 0 0 chr9 85211804 85211856 -38864316 - L1MC3 LINE L1 -513 7272 7221 3 1235 325 259 198 27 chr9 85211883 85212252 -38863920 - L1MC3 LINE L1 -634 7151 6720 3 1235 201 154 76 15 chr9 85212753 85212819 -38863353 + (TATG)n Simple_repeat Simple_repeat 1 70 0 3 1235 301 127 27 75 chr9 85212820 85213007 -38863165 + (ATGTG)n Simple_repeat Simple_repeat 1 178 0 3 1235 563 150 6 50 chr9 85213019 85213201 -38862971 + (TG)n Simple_repeat Simple_repeat 1 174 0 3 1235 312 137 0 0 chr9 85213511 85213562 -38862610 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1235 215 132 37 19 chr9 85216294 85216348 -38859824 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1235 248 258 15 15 chr9 85216886 85216953 -38859219 + (CATA)n Simple_repeat Simple_repeat 2 68 0 3 1235 22 0 0 0 chr9 85217080 85217102 -38859070 + AT_rich Low_complexity Low_complexity 1 22 0 3 1235 30 0 0 0 chr9 85217294 85217324 -38858848 + AT_rich Low_complexity Low_complexity 1 30 0 3 1235 275 87 43 0 chr9 85217966 85218012 -38858160 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 3 1235 28 0 0 0 chr9 85219743 85219771 -38856401 + AT_rich Low_complexity Low_complexity 1 28 0 3 1235 207 172 29 59 chr9 85220753 85220821 -38855351 + C-rich Low_complexity Low_complexity 6 71 0 3 1235 274 250 162 0 chr9 85222453 85222533 -38853639 - PB1D10 SINE Alu -20 97 5 3 1235 1171 75 7 0 chr9 85222790 85222936 -38853236 - B1_Mus1 SINE Alu 0 148 2 3 1235 198 71 0 0 chr9 85222996 85223024 -38853148 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1235 607 259 75 69 chr9 85224137 85224311 -38851861 + B3A SINE B2 1 175 -23 3 1235 396 0 0 0 chr9 85224313 85224357 -38851815 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1235 627 0 36 0 chr9 85224663 85224746 -38851426 + (TTG)n Simple_repeat Simple_repeat 2 87 0 3 1235 1265 43 0 0 chr9 85224746 85224885 -38851287 - B1_Mm SINE Alu -8 139 1 3 1235 950 266 145 19 chr9 85226091 85226416 -38849756 - ORR1D2 LTR MaLR -2 368 3 3 1235 1862 96 22 0 chr9 85228335 85228605 -38847567 - ORR1A2 LTR MaLR -51 276 1 3 1235 3914 97 19 7 chr9 85228605 85229176 -38846996 - ORR1A2-int LTR MaLR 0 1963 1386 3 1235 307 291 12 12 chr9 85229860 85229940 -38846232 + ID4_ SINE ID 3 82 -1 3 1235 1447 82 0 0 chr9 85229955 85230139 -38846033 + L1_Mus2 LINE L1 6383 6566 0 3 1235 368 356 0 32 chr9 85230248 85230402 -38845770 - B1F SINE Alu 0 149 1 3 1235 195 129 0 0 chr9 85231817 85231848 -38844324 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1235 3054 65 37 22 chr9 85232737 85233143 -38843029 - L1_Mus3 LINE L1 -1 6637 6226 3 1235 440 250 0 0 chr9 85234666 85234758 -38841414 + MTE2b LTR MaLR 7 98 -281 3 1235 1204 266 51 6 chr9 85234794 85235108 -38841064 + MTE2b LTR MaLR 52 379 0 3 1235 261 197 0 0 chr9 85236086 85236157 -38840015 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 3 1235 323 234 245 0 chr9 85236182 85236276 -38839896 - PB1D9 SINE Alu -3 117 1 3 1235 463 137 0 59 chr9 85237877 85237978 -38838194 - Lx2 LINE L1 -1 6996 6902 3 1235 338 354 99 71 chr9 85238307 85238672 -38837500 + MTEb LTR MaLR 5 379 0 3 1235 5022 43 29 0 chr9 85238759 85239346 -38836826 - L1Md_F2 LINE L1 -2 6580 5977 3 1235 796 353 117 11 chr9 85239372 85239911 -38836261 - Arthur1 DNA Tip100 -3292 655 60 3 1235 681 313 80 28 chr9 85240490 85240776 -38835396 - RMER15 LTR ERVL 0 575 275 3 1235 591 284 125 23 chr9 85240962 85241178 -38834994 - RMER15-int LTR ERVL -610 4389 4152 3 1235 375 232 122 0 chr9 85241229 85241311 -38834861 - RMER15-int LTR ERVL -2612 2387 2296 3 1235 271 316 62 10 chr9 85241345 85241441 -38834731 - RMER15-int LTR ERVL -2813 2186 2086 3 1235 3548 315 53 34 chr9 85241459 85242938 -38833234 - RMER15-int LTR ERVL -3112 1887 381 3 1235 1325 163 5 27 chr9 85243019 85243240 -38832932 + URR1B DNA MER1_type 1 216 -9 3 1235 681 253 27 11 chr9 85243420 85243604 -38832568 - RMER15 LTR ERVL -70 505 319 3 1235 1609 254 39 48 chr9 85243601 85244060 -38832112 - RMER15 LTR ERVL -14 561 107 3 1235 196 346 12 36 chr9 85245376 85245460 -38830712 + MIRb SINE MIR 113 194 -74 3 1235 568 318 89 99 chr9 85245649 85246155 -38830017 - MLT1D LTR MaLR 0 505 5 3 1235 3265 57 39 3 chr9 85246925 85247311 -38828861 + MTB LTR MaLR 1 400 0 3 1235 210 278 82 14 chr9 85247413 85247486 -38828686 - MIR SINE MIR -95 167 90 3 1235 207 0 0 0 chr9 85247914 85247937 -38828235 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1235 368 294 93 47 chr9 85249564 85249778 -38826394 - Lx8 LINE L1 0 7473 7250 3 1235 669 58 0 0 chr9 85250047 85250133 -38826039 + (GGA)n Simple_repeat Simple_repeat 3 88 0 3 1235 588 337 41 43 chr9 85250134 85250624 -38825548 + Lx9 LINE L1 7010 7643 -1 3 1235 1413 116 56 5 chr9 85250850 85251066 -38825106 + Lx3A LINE L1 6751 6977 -4 3 1235 282 56 0 0 chr9 85251072 85251108 -38825064 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 1235 189 0 0 0 chr9 85252111 85252132 -38824040 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1235 1970 177 37 16 chr9 85252132 85252464 -38823708 - Lx LINE L1 -15 6639 6302 3 1235 423 0 0 0 chr9 85252464 85252511 -38823661 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1235 1970 177 37 16 chr9 85252511 85252552 -38823620 - Lx LINE L1 -353 6301 6258 3 1235 194 0 0 37 chr9 85254013 85254040 -38822132 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1235 3976 72 12 14 chr9 85255218 85255729 -38820443 - Lx3_Mus LINE L1 0 7009 6500 3 1235 204 372 32 11 chr9 85255783 85255878 -38820294 - MIR SINE MIR -160 102 6 3 1235 22 35 0 0 chr9 85257483 85257512 -38818660 + AT_rich Low_complexity Low_complexity 1 29 0 3 1235 301 369 28 72 chr9 85257780 85257961 -38818211 + MLT1G LTR MaLR 169 341 -250 3 1235 408 290 17 64 chr9 85258087 85258260 -38817912 - MER33 DNA MER1_type -134 190 26 3 1235 279 0 0 0 chr9 85258283 85258314 -38817858 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1235 704 241 131 0 chr9 85258389 85258580 -38817592 - B3 SINE B2 0 216 1 3 1235 796 152 0 13 chr9 85260305 85260458 -38815714 + (TA)n Simple_repeat Simple_repeat 1 151 0 3 1235 315 0 0 0 chr9 85260458 85260493 -38815679 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1235 243 0 0 0 chr9 85260495 85260522 -38815650 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1235 194 327 157 24 chr9 85261117 85261195 -38814977 - MIRc SINE MIR -15 253 158 3 1235 522 83 0 0 chr9 85261195 85261267 -38814905 + (CTG)n Simple_repeat Simple_repeat 1 72 0 3 1235 194 327 157 24 chr9 85261267 85261398 -38814774 - MIRc SINE MIR -111 157 17 3 1235 229 242 152 0 chr9 85261438 85261504 -38814668 - RMER21B LTR ERV1 -124 718 643 3 1235 405 164 0 0 chr9 85261545 85261618 -38814554 + (ATTG)n Simple_repeat Simple_repeat 4 76 0 3 1235 266 342 0 0 chr9 85261618 85261694 -38814478 - ID4 SINE ID -5 78 3 3 1235 513 0 0 0 chr9 85261766 85261823 -38814349 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 3 1235 180 111 0 0 chr9 85262248 85262275 -38813897 + (CATG)n Simple_repeat Simple_repeat 2 28 0 3 1235 280 292 0 0 chr9 85262278 85262343 -38813829 + (CGTG)n Simple_repeat Simple_repeat 1 65 0 3 1235 249 266 12 37 chr9 85262879 85262961 -38813211 + ID4 SINE ID 2 81 -2 3 1235 23 33 0 0 chr9 85262966 85262996 -38813176 + AT_rich Low_complexity Low_complexity 1 30 0 3 1235 398 360 40 5 chr9 85264726 85264927 -38811245 + MIR SINE MIR 34 241 -21 3 1235 243 309 116 11 chr9 85265011 85265106 -38811066 + PB1D10 SINE Alu 6 110 -7 3 1235 1296 84 0 0 chr9 85265106 85265285 -38810887 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 1235 536 0 16 0 chr9 85265299 85265363 -38810809 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 3 1235 200 218 88 35 chr9 85265475 85265532 -38810640 + MIR SINE MIR 34 93 -115 3 1235 197 358 28 28 chr9 85265672 85265813 -38810359 - L2a LINE L2 -60 3366 3226 4 1235 791 93 0 8 chr9 85266549 85266668 -38809504 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 4 1235 232 411 36 24 chr9 85270859 85271026 -38805146 + LTR33A_ LTR ERVL 47 215 -316 4 1235 1093 266 28 41 chr9 85271691 85272009 -38804163 - Lx9 LINE L1 -910 6734 6421 4 1235 195 129 0 0 chr9 85272307 85272338 -38803834 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1235 1251 190 12 12 chr9 85272340 85272585 -38803587 - RLTR15 LTR ERVK -75 284 40 4 1235 3195 216 57 37 chr9 85272591 85273111 -38803061 - Lx9 LINE L1 -1670 5974 5415 4 1235 261 0 0 0 chr9 85273111 85273140 -38803032 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1235 3195 212 53 43 chr9 85273140 85273584 -38802588 - Lx9 LINE L1 -433 5414 4965 4 1235 910 85 16 33 chr9 85273595 85273656 -38802516 + (GGAA)n Simple_repeat Simple_repeat 2 61 0 4 1235 728 22 11 0 chr9 85273656 85273746 -38802426 + (GAA)n Simple_repeat Simple_repeat 1 91 0 4 1235 910 85 16 33 chr9 85273746 85273866 -38802306 + (GGAA)n Simple_repeat Simple_repeat 2 120 0 4 1235 226 281 10 10 chr9 85273849 85273953 -38802219 + GA-rich Low_complexity Low_complexity 1 104 0 4 1235 618 328 112 7 chr9 85274517 85274812 -38801360 + MLT1A0 LTR MaLR 40 365 0 4 1235 530 230 64 43 chr9 85274967 85275108 -38801064 + B1_Mur1 SINE Alu 1 144 -5 4 1235 660 26 0 0 chr9 85275224 85275302 -38800870 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1235 512 41 0 40 chr9 85276049 85276125 -38800047 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 1235 354 23 0 0 chr9 85276609 85276652 -38799520 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1235 729 308 79 15 chr9 85276678 85276945 -38799227 - B4A SINE B4 -8 284 1 4 1235 291 114 0 0 chr9 85276959 85277003 -38799169 + (TATG)n Simple_repeat Simple_repeat 4 47 0 4 1235 387 303 105 31 chr9 85277594 85277785 -38798387 - Lx8 LINE L1 -141 7503 7170 4 1235 342 271 46 46 chr9 85277787 85277938 -38798234 + Lx9 LINE L1 7084 7234 -410 4 1235 308 343 98 0 chr9 85277977 85278079 -38798093 + PB1 SINE Alu 12 123 -4 4 1235 29 28 0 0 chr9 85278554 85278590 -38797582 + AT_rich Low_complexity Low_complexity 1 36 0 4 1235 231 88 0 0 chr9 85279349 85279383 -38796789 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 4 1235 339 25 0 0 chr9 85279383 85279422 -38796750 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1235 216 162 0 0 chr9 85279439 85279476 -38796696 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 4 1235 592 360 38 28 chr9 85280491 85280780 -38795392 - B4A SINE B4 0 292 1 4 1235 23 0 0 0 chr9 85280901 85280924 -38795248 + AT_rich Low_complexity Low_complexity 1 23 0 4 1235 227 325 23 11 chr9 85280966 85281053 -38795119 - MIRb SINE MIR -67 201 114 4 1235 2489 85 3 0 chr9 85281056 85281410 -38794762 - L1_Mus1 LINE L1 -421 6145 5791 4 1235 3042 70 45 2 chr9 85281410 85281810 -38794362 + L1_Mus1 LINE L1 6150 6566 -1 4 1235 213 329 14 0 chr9 85283354 85283424 -38792748 - ID4 SINE ID -11 72 2 4 1235 722 284 71 20 chr9 85283635 85283833 -38792339 + B4 SINE B4 84 291 -1 4 1235 189 228 188 12 chr9 85287444 85287524 -38788648 + L3 LINE CR1 1 94 -4395 4 1235 255 333 13 0 chr9 85287621 85287696 -38788476 + MER5A DNA MER1_type 32 107 -82 4 1235 231 61 0 0 chr9 85288135 85288168 -38788004 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1235 555 305 31 88 chr9 85289226 85289420 -38786752 - B3A SINE B2 -10 183 1 4 1235 843 276 120 30 chr9 85289778 85290178 -38785994 - MER63B DNA AcHobo 0 436 1 4 1235 435 315 80 91 chr9 85290562 85290839 -38785333 + ORR1E LTR MaLR 4 277 -97 4 1235 479 292 64 19 chr9 85290892 85291049 -38785123 - B4A SINE B4 -10 282 119 4 1235 1873 88 40 0 chr9 85291071 85291343 -38784829 - Lx3_Mus LINE L1 -8 7001 6719 4 1235 457 306 96 14 chr9 85291555 85291774 -38784398 + L2b LINE L2 2511 2747 -672 4 1235 948 279 84 29 chr9 85292071 85292435 -38783737 + MLT1A1 LTR MaLR 1 408 0 4 1235 239 268 126 11 chr9 85293265 85293352 -38782820 + LTR33 LTR ERVL 368 464 -51 4 1235 230 292 62 0 chr9 85293922 85293987 -38782185 + L2b LINE L2 3307 3375 0 4 1235 218 272 50 58 chr9 85295244 85295365 -38780807 + MIR SINE MIR 116 235 -27 4 1235 797 293 5 19 chr9 85296178 85296390 -38779782 - ID_B1 SINE B4 -15 209 1 4 1235 421 268 40 24 chr9 85296557 85296683 -38779489 - B1F SINE Alu -10 139 12 4 1235 367 284 144 29 chr9 85296691 85297257 -38778915 + L1MB7 LINE L1 1561 2218 -5116 4 1235 441 267 49 99 chr9 85297264 85297426 -38778746 + B4 SINE B4 3 156 -136 4 1235 239 363 63 76 chr9 85297456 85297614 -38778558 + MER76 LTR ERVL 123 278 -413 4 1235 771 168 23 11 chr9 85297716 85297891 -38778281 + GA-rich Low_complexity Low_complexity 2 178 0 4 1235 319 130 0 0 chr9 85297891 85297937 -38778235 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 4 1235 281 302 137 36 chr9 85297951 85298119 -38778053 + MER76 LTR ERVL 413 597 -94 4 1235 297 0 0 0 chr9 85298141 85298174 -38777998 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1235 270 0 0 0 chr9 85298234 85298264 -38777908 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 4 1235 383 260 0 0 chr9 85298338 85298411 -38777761 - B3A SINE B2 -125 73 1 4 1235 311 269 118 75 chr9 85298417 85298936 -38777236 + L1MB7 LINE L1 5078 5618 -1388 4 1235 742 320 35 43 chr9 85298941 85299196 -38776976 + B4A SINE B4 2 254 -38 4 1235 434 316 27 38 chr9 85299501 85299685 -38776487 + B3A SINE B2 1 182 -16 4 1235 332 301 46 0 chr9 85299751 85299924 -38776248 + L1MB7 LINE L1 6114 6294 -750 4 1235 252 329 84 40 chr9 85300198 85300578 -38775594 + L1MB7 LINE L1 6520 6916 -128 4 1235 205 77 50 25 chr9 85300599 85300639 -38775533 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 4 1235 2019 143 17 36 chr9 85300639 85301001 -38775171 - Lx4A LINE L1 -10 7048 6694 4 1235 1927 198 80 10 chr9 85301218 85301632 -38774540 - RLTR16 LTR ERVK -56 449 7 4 1235 21 71 0 0 chr9 85302649 85302691 -38773481 + AT_rich Low_complexity Low_complexity 1 42 0 4 1235 219 184 51 26 chr9 85302763 85302841 -38773331 + T-rich Low_complexity Low_complexity 4 83 0 4 1235 228 67 0 0 chr9 85302891 85302921 -38773251 + (TTA)n Simple_repeat Simple_repeat 2 31 0 4 1235 404 238 119 37 chr9 85302927 85303036 -38773136 - B1F1 SINE Alu -14 135 18 4 1235 474 18 0 0 chr9 85303113 85303168 -38773004 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1235 460 165 93 108 chr9 85303379 85303508 -38772664 + B1F2 SINE Alu 23 149 0 4 1235 198 143 0 0 chr9 85304494 85304529 -38771643 + (CAG)n Simple_repeat Simple_repeat 3 37 0 4 1235 264 130 0 0 chr9 85304712 85304758 -38771414 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1235 240 111 0 53 chr9 85305339 85305396 -38770776 + C-rich Low_complexity Low_complexity 6 59 0 4 1235 691 274 162 18 chr9 85305671 85306121 -38770051 + L1MA8 LINE L1 5752 6266 -25 4 1235 455 291 23 23 chr9 85308294 85308424 -38767748 + MTD LTR MaLR 276 405 -14 4 1235 5045 227 93 21 chr9 85309225 85309797 -38766375 - Lx9 LINE L1 -7 7637 7028 4 1235 5834 65 0 1 chr9 85309797 85310546 -38765626 - L1Md_F2 LINE L1 -1 6581 5834 4 1235 5045 248 87 33 chr9 85310546 85311876 -38764296 - Lx9 LINE L1 -617 7027 5462 4 1235 1028 173 94 0 chr9 85313899 85314101 -38762071 - URR1B DNA MER1_type 0 225 5 4 1235 432 207 121 91 chr9 85314114 85314178 -38761994 - MT2A LTR ERVL -16 517 465 4 1235 180 0 0 0 chr9 85314178 85314198 -38761974 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1235 1002 232 60 52 chr9 85314198 85314567 -38761605 - MT2A LTR ERVL -62 539 1 4 1235 369 0 0 0 chr9 85315367 85315408 -38760764 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1235 3705 115 180 6 chr9 85315743 85316416 -38759756 + Lx2 LINE L1 6208 6997 0 4 1235 26 30 0 0 chr9 85316589 85316622 -38759550 + AT_rich Low_complexity Low_complexity 1 33 0 4 1235 22 56 0 0 chr9 85316705 85316741 -38759431 + AT_rich Low_complexity Low_complexity 1 36 0 4 1235 285 29 0 0 chr9 85316858 85316892 -38759280 + (GGA)n Simple_repeat Simple_repeat 2 35 0 4 1235 560 316 35 50 chr9 85316892 85316912 -38759260 + MTE2a LTR MaLR 171 188 -191 4 1235 270 0 0 0 chr9 85316912 85316942 -38759230 + (GAGAA)n Simple_repeat Simple_repeat 1 30 0 4 1235 560 316 35 50 chr9 85316942 85317121 -38759051 + MTE2a LTR MaLR 189 367 -12 4 1235 2317 303 91 9 chr9 85317127 85318550 -38757622 + MTE2a-int LTR MaLR 19 1557 -23 4 1235 1130 270 98 6 chr9 85318547 85318864 -38757308 + MTEa LTR MaLR 34 379 0 4 1235 296 83 21 0 chr9 85321031 85321079 -38755093 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1235 180 0 0 0 chr9 85321581 85321601 -38754571 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 4 1235 1032 291 18 24 chr9 85321727 85322062 -38754110 + RMER1B Other Other 10 342 -724 4 1235 422 329 99 69 chr9 85323229 85323461 -38752711 + MLT1C LTR MaLR 229 467 0 4 1235 235 338 65 30 chr9 85323478 85323646 -38752526 - MER104 DNA Tc2 -4 177 4 4 1235 201 250 0 20 chr9 85323889 85323938 -38752234 + CT-rich Low_complexity Low_complexity 1 48 0 4 1235 270 274 76 76 chr9 85323938 85324017 -38752155 - ID4_ SINE ID -3 80 2 4 1235 4167 63 0 0 chr9 85324035 85324559 -38751613 - L1_Mus1 LINE L1 0 6567 6044 4 1235 238 304 122 26 chr9 85324787 85324976 -38751196 + L1MC LINE L1 5562 5768 -2114 4 1235 903 250 14 14 chr9 85325277 85325484 -38750688 - B3 SINE B2 -7 209 3 4 1235 229 368 40 40 chr9 85325675 85325774 -38750398 + PB1D10 SINE Alu 2 100 -17 4 1235 882 215 19 86 chr9 85325941 85326210 -38749962 + Lx9 LINE L1 7087 7337 -307 4 1236 180 0 0 0 chr9 85327903 85327923 -38748249 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1236 245 230 27 0 chr9 85328111 85328185 -38747987 + L1MA5 LINE L1 6225 6300 0 4 1236 1611 39 0 5 chr9 85328662 85328883 -38747289 - L1Md_F3 LINE L1 0 6584 6381 4 1236 261 54 0 0 chr9 85328883 85328903 -38747269 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1236 2381 18 14 0 chr9 85328903 85329183 -38746989 - L1Md_T LINE L1 0 6582 6299 4 1236 24 53 0 0 chr9 85329537 85329575 -38746597 + AT_rich Low_complexity Low_complexity 1 38 0 4 1236 1081 209 0 0 chr9 85329975 85330162 -38746010 - B3 SINE B2 -29 187 1 5 1236 357 319 71 41 chr9 85330797 85330993 -38745179 + MLT1I LTR MaLR 9 210 -201 5 1236 264 250 95 13 chr9 85331554 85331695 -38744477 + MIR SINE MIR 57 207 -61 5 1236 490 295 64 116 chr9 85332303 85332573 -38743599 - ORR1E LTR MaLR -118 256 1 5 1236 439 264 35 43 chr9 85334184 85334299 -38741873 + B3 SINE B2 78 191 -25 5 1236 228 67 0 0 chr9 85334323 85334353 -38741819 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1236 300 111 0 0 chr9 85334381 85334426 -38741746 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1236 834 285 10 34 chr9 85334530 85334737 -38741435 - ID_B1 SINE B4 -22 202 1 5 1236 322 21 21 21 chr9 85335617 85335665 -38740507 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 5 1236 186 103 0 0 chr9 85336261 85336290 -38739882 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5 1236 25 0 0 0 chr9 85337331 85337356 -38738816 + AT_rich Low_complexity Low_complexity 1 25 0 5 1236 314 123 18 0 chr9 85337373 85337430 -38738742 + (TCCC)n Simple_repeat Simple_repeat 3 60 0 5 1236 333 0 0 0 chr9 85338853 85338890 -38737282 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1236 285 241 73 37 chr9 85339285 85339367 -38736805 + MT2A LTR ERVL 324 408 -125 5 1236 64 14 0 0 chr9 85339413 85339484 -38736688 + AT_rich Low_complexity Low_complexity 1 71 0 5 1236 1436 239 62 21 chr9 85341055 85341443 -38734729 - MTD LTR MaLR -13 406 3 5 1236 347 238 137 13 chr9 85341553 85341669 -38734503 - Lx5 LINE L1 -7 7043 6910 5 1236 186 71 0 0 chr9 85341669 85341697 -38734475 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1236 347 238 137 13 chr9 85341697 85341733 -38734439 - Lx5 LINE L1 -141 6909 6873 5 1236 351 0 0 0 chr9 85341894 85341933 -38734239 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1236 232 232 0 0 chr9 85343092 85343148 -38733024 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1236 250 184 0 0 chr9 85343905 85343954 -38732218 + B2_Mm2 SINE B2 1 49 -146 5 1236 22 0 0 0 chr9 85344034 85344056 -38732116 + AT_rich Low_complexity Low_complexity 1 22 0 5 1236 912 82 8 0 chr9 85344135 85344257 -38731915 + B1_Mus1 SINE Alu 22 144 -4 5 1236 585 0 0 0 chr9 85344261 85344326 -38731846 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1236 203 342 6 0 chr9 85345592 85345672 -38730500 + MIRm SINE MIR 72 160 -116 5 1236 689 121 15 61 chr9 85346620 85346752 -38729420 - B1_Mus2 SINE Alu 0 147 22 5 1236 3932 103 47 15 chr9 85347175 85347767 -38728405 - L1_Mus3 LINE L1 0 6638 6028 5 1236 222 105 0 0 chr9 85347768 85347806 -38728366 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1236 476 16 16 0 chr9 85348663 85348724 -38727448 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1236 319 215 29 15 chr9 85348958 85349095 -38727077 + GA-rich Low_complexity Low_complexity 6 144 0 5 1236 851 259 18 23 chr9 85350724 85350941 -38725231 + ID_B1 SINE B4 1 216 -8 5 1236 229 272 95 4 chr9 85351305 85351401 -38724771 + MIR SINE MIR 45 154 -114 5 1236 1676 19 10 0 chr9 85351573 85351778 -38724394 - L1Md_F2 LINE L1 0 6582 6376 5 1236 315 0 0 0 chr9 85351872 85351907 -38724265 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1236 243 0 0 0 chr9 85352201 85352228 -38723944 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1236 293 226 80 87 chr9 85353469 85353619 -38722553 - Charlie1a DNA MER1_type -227 1228 1080 5 1236 411 319 49 27 chr9 85353659 85353843 -38722329 - Charlie1a DNA MER1_type -470 985 798 5 1236 833 315 103 30 chr9 85353881 85354417 -38721755 - Charlie1a DNA MER1_type -739 716 142 5 1236 727 188 84 0 chr9 85355062 85355216 -38720956 + Lx7 LINE L1 7069 7235 -461 5 1236 993 160 66 20 chr9 85355216 85355414 -38720758 - ORR1C1 LTR MaLR 0 378 172 5 1236 1828 169 49 12 chr9 85355415 85355847 -38720325 + L1_Mur3 LINE L1 1605 2052 -3828 5 1236 315 71 0 0 chr9 85355850 85355892 -38720280 + (CCA)n Simple_repeat Simple_repeat 3 44 0 5 1236 1062 231 9 9 chr9 85355892 85356119 -38720053 + Lx6 LINE L1 6412 6638 -822 5 1236 2062 237 65 23 chr9 85356133 85356656 -38719516 + Lx6 LINE L1 6912 7456 -4 5 1236 199 264 0 19 chr9 85356848 85356902 -38719270 + MIR SINE MIR 100 152 -110 5 1236 329 323 39 29 chr9 85357036 85357138 -38719034 + B1F SINE Alu 39 141 -8 5 1236 4998 91 21 0 chr9 85358193 85358897 -38717275 - Lx4A LINE L1 -149 6909 6191 5 1236 202 143 32 0 chr9 85360203 85360266 -38715906 + A-rich Low_complexity Low_complexity 1 65 0 5 1236 443 207 6 22 chr9 85362021 85362204 -38713968 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1236 1020 316 102 3 chr9 85362248 85362708 -38713464 - Tigger7 DNA MER2_type -169 536 1 5 1236 1556 131 45 39 chr9 85363211 85363521 -38712651 - Lx LINE L1 -3 6651 6340 5 1236 189 0 0 0 chr9 85363901 85363922 -38712250 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1236 829 170 7 14 chr9 85365692 85365835 -38710337 + B1_Mus1 SINE Alu 1 142 -6 5 1236 671 0 13 0 chr9 85369318 85369397 -38706775 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 1236 23 0 0 0 chr9 85369485 85369508 -38706664 + AT_rich Low_complexity Low_complexity 1 23 0 5 1236 232 37 35 53 chr9 85370121 85370178 -38705994 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 5 1236 332 141 99 37 chr9 85370398 85370479 -38705693 + RLTR25B LTR ERVK 424 509 -519 5 1236 830 20 10 0 chr9 85370419 85370521 -38705651 + B1_Mus2 SINE Alu 45 147 0 5 1236 312 152 0 0 chr9 85370524 85370590 -38705582 + A-rich Low_complexity Low_complexity 1 66 0 5 1236 348 231 43 136 chr9 85370695 85370835 -38705337 + MT2B LTR ERVL 152 278 -323 5 1236 840 156 0 41 chr9 85370718 85370865 -38705307 + B1_Mur4 SINE Alu 9 149 -1 5 1236 432 0 0 0 chr9 85371090 85371138 -38705034 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1236 307 314 6 25 chr9 85371361 85371521 -38704651 + (TTAGGG)n Simple_repeat Simple_repeat 4 160 0 5 1236 416 303 18 6 chr9 85371558 85371724 -38704448 + (TTAGGG)n Simple_repeat Simple_repeat 3 170 0 5 1236 443 191 205 18 chr9 85371805 85371917 -38704255 + B1_Mur4 SINE Alu 6 138 -12 5 1236 2569 169 136 74 chr9 85372071 85372662 -38703510 + MTC-int LTR MaLR 374 1044 -214 5 1236 225 0 0 0 chr9 85372662 85372687 -38703485 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1236 2569 159 151 53 chr9 85372687 85372721 -38703451 + MTC-int LTR MaLR 1045 1067 -191 5 1236 4036 48 121 0 chr9 85372721 85373243 -38702929 - L1_Mus1 LINE L1 0 6567 5983 5 1236 2569 159 151 53 chr9 85373243 85373368 -38702804 + MTC-int LTR MaLR 1068 1243 -15 5 1236 547 126 0 11 chr9 85373368 85373456 -38702716 + MTC LTR MaLR 1 87 -334 5 1236 327 158 0 0 chr9 85373455 85373512 -38702660 + MTD LTR MaLR 355 411 -8 5 1236 838 161 66 5 chr9 85373678 85373843 -38702329 + MTC-int LTR MaLR 503 781 -477 5 1236 312 263 175 0 chr9 85375059 85375173 -38700999 - MIRb SINE MIR -21 247 114 5 1236 3335 38 5 0 chr9 85375978 85376372 -38699800 - MTA_Mm LTR MaLR 0 396 1 5 1236 242 262 25 0 chr9 85376554 85376634 -38699538 + (TA)n Simple_repeat Simple_repeat 1 82 0 5 1236 228 260 210 0 chr9 85376635 85376735 -38699437 + L1MDa LINE L1 123 243 -6390 5 1236 258 370 82 11 chr9 85377059 85377242 -38698930 + L1MDa LINE L1 750 945 -5688 5 1236 323 308 15 15 chr9 85377489 85377624 -38698548 + L1MDa LINE L1 1483 1617 -5016 5 1236 324 0 0 0 chr9 85377692 85377728 -38698444 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1236 21 57 0 0 chr9 85377950 85377985 -38698187 + AT_rich Low_complexity Low_complexity 1 35 0 5 1236 351 0 0 0 chr9 85377985 85378024 -38698148 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1236 1592 254 46 54 chr9 85378145 85378644 -38697528 - RMER5 LTR ERV1 0 534 40 5 1236 2226 123 9 0 chr9 85378653 85378979 -38697193 - ORR1A4 LTR MaLR 0 329 1 5 1236 547 219 43 82 chr9 85379785 85379969 -38696203 + RMER5 LTR ERV1 2 178 -356 5 1236 782 258 105 25 chr9 85380014 85380253 -38695919 + RMER5 LTR ERV1 277 534 0 5 1236 345 223 46 40 chr9 85380310 85380483 -38695689 + L1MDa LINE L1 2369 2542 -4091 5 1236 30 59 0 0 chr9 85380515 85380566 -38695606 + AT_rich Low_complexity Low_complexity 1 51 0 5 1236 1099 285 55 12 chr9 85382762 85383177 -38692995 - Lx8 LINE L1 -671 6802 6370 5 1236 225 0 0 0 chr9 85383204 85383229 -38692943 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1236 482 105 0 0 chr9 85383246 85383332 -38692840 + L1_Mus4 LINE L1 6551 6636 0 5 1236 224 128 20 78 chr9 85384147 85384198 -38691974 - MIR SINE MIR -212 50 3 5 1236 22 0 0 0 chr9 85384619 85384641 -38691531 + AT_rich Low_complexity Low_complexity 1 22 0 5 1236 797 305 144 9 chr9 85385031 85385365 -38690807 + MLT2D LTR ERVL 16 394 -20 5 1236 263 340 92 29 chr9 85385431 85385683 -38690489 + MIRb SINE MIR 3 271 -5 5 1236 827 173 0 97 chr9 85386559 85386745 -38689427 - URR1A DNA MER1_type 0 226 59 5 1236 321 324 36 22 chr9 85386964 85387103 -38689069 - L2a LINE L2 -41 3385 3245 5 1236 277 261 28 28 chr9 85387486 85387557 -38688615 - MIRb SINE MIR -81 187 117 5 1236 351 0 0 0 chr9 85388386 85388425 -38687747 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1236 882 110 8 0 chr9 85389798 85389925 -38686247 - B1_Mus2 SINE Alu -7 140 13 5 1236 351 122 53 13 chr9 85389929 85390004 -38686168 - L1Md_F2 LINE L1 -3 6579 6502 5 1236 515 43 14 0 chr9 85390980 85391050 -38685122 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1236 335 41 0 20 chr9 85391938 85391988 -38684184 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1236 183 269 9 131 chr9 85393676 85393783 -38682389 + L2c LINE L2 3294 3387 0 5 1236 225 154 0 0 chr9 85393835 85393874 -38682298 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1236 330 161 18 0 chr9 85394060 85394116 -38682056 + RMER15 LTR ERVL 1 57 -518 5 1236 1143 286 167 42 chr9 85394127 85394623 -38681549 + RMER15 LTR ERVL 18 575 0 5 1236 522 296 36 18 chr9 85394626 85394850 -38681322 - L1MA4 LINE L1 -389 5911 5684 5 1236 323 273 112 43 chr9 85394951 85395112 -38681060 - L1M5 LINE L1 -726 5436 5265 5 1236 474 328 114 9 chr9 85396636 85396966 -38679206 - MLT1A0 LTR MaLR 0 365 1 5 1236 2352 206 58 23 chr9 85397193 85397377 -38678795 + Lx7 LINE L1 7104 7292 -404 5 1236 254 29 29 0 chr9 85397377 85397412 -38678760 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5 1236 2352 206 58 23 chr9 85397412 85397798 -38678374 + Lx7 LINE L1 7293 7694 -2 5 1236 345 47 0 0 chr9 85399949 85399992 -38676180 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1236 1164 111 0 0 chr9 85399992 85400172 -38676000 + (CATA)n Simple_repeat Simple_repeat 1 180 0 6 1236 671 302 0 30 chr9 85401188 85401386 -38674786 - B3A SINE B2 -6 192 1 6 1236 1103 61 7 0 chr9 85401681 85401829 -38674343 + (GAAA)n Simple_repeat Simple_repeat 4 152 0 6 1236 740 246 49 25 chr9 85402384 85402588 -38673584 + B3 SINE B2 1 209 -7 6 1236 26 50 0 0 chr9 85402588 85402628 -38673544 + AT_rich Low_complexity Low_complexity 1 40 0 6 1236 481 316 220 34 chr9 85402975 85403211 -38672961 + B4A SINE B4 3 282 -10 6 1236 198 91 0 0 chr9 85403257 85403290 -38672882 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1236 705 228 41 53 chr9 85404251 85404496 -38671676 - RLTR15 LTR ERVK -117 242 1 6 1236 1185 28 0 0 chr9 85404566 85404707 -38671465 + (TGGA)n Simple_repeat Simple_repeat 2 142 0 6 1236 224 303 0 83 chr9 85405532 85405640 -38670532 + B1_Mm SINE Alu 1 99 -48 6 1236 25 51 0 0 chr9 85405644 85405683 -38670489 + AT_rich Low_complexity Low_complexity 1 39 0 6 1236 258 344 32 0 chr9 85406129 85406245 -38669927 - MIR SINE MIR -141 121 5 6 1236 624 38 0 0 chr9 85406423 85406502 -38669670 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1236 25 0 0 0 chr9 85406533 85406558 -38669614 + AT_rich Low_complexity Low_complexity 1 25 0 6 1236 668 202 344 67 chr9 85406984 85407230 -38668942 - RMER12 LTR ERVK -123 1199 910 6 1236 189 0 0 0 chr9 85407230 85407251 -38668921 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1236 668 206 191 95 chr9 85407251 85407468 -38668704 - RMER12 LTR ERVK -413 909 741 6 1236 11937 11 0 0 chr9 85407475 85408834 -38667338 + L1Md_A LINE L1 4228 5586 -297 6 1236 8718 13 2 4 chr9 85408834 85409852 -38666320 + L1Md_A LINE L1 5587 6582 0 6 1236 8718 13 2 4 chr9 85409852 85409874 -38666298 + L1Md_A LINE L1 6562 6582 0 6 1236 1361 239 71 104 chr9 85409888 85410705 -38665467 - RMER12 LTR ERVK -997 811 1 6 1236 315 71 0 0 chr9 85410951 85410993 -38665179 + (CATA)n Simple_repeat Simple_repeat 3 44 0 6 1236 378 0 0 0 chr9 85411289 85411331 -38664841 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1236 203 355 115 57 chr9 85412492 85412875 -38663297 + L2 LINE L2 1337 1741 -1678 6 1236 1071 264 249 13 chr9 85412892 85413289 -38662883 - Lx9 LINE L1 -22 7622 7132 6 1236 1383 232 57 35 chr9 85413627 85413838 -38662334 + MTEa LTR MaLR 1 206 -173 6 1236 758 48 10 0 chr9 85413838 85413941 -38662231 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 6 1236 1383 232 57 35 chr9 85413941 85414100 -38662072 + MTEa LTR MaLR 207 378 -1 6 1236 239 361 148 0 chr9 85414200 85414322 -38661850 - B1F1 SINE Alu 0 149 10 6 1236 467 338 119 11 chr9 85414562 85414999 -38661173 - L1MC4 LINE L1 -4851 1364 881 6 1236 233 323 153 53 chr9 85416274 85416483 -38659689 + MLT1G1 LTR MaLR 21 250 -329 6 1236 459 0 0 0 chr9 85416494 85416545 -38659627 + (CATA)n Simple_repeat Simple_repeat 4 54 0 6 1236 209 197 13 0 chr9 85416582 85416658 -38659514 + (TCTCTG)n Simple_repeat Simple_repeat 5 81 0 6 1236 22 0 0 0 chr9 85417430 85417452 -38658720 + AT_rich Low_complexity Low_complexity 1 22 0 6 1236 300 360 38 32 chr9 85417509 85417667 -38658505 - MIRm SINE MIR -111 165 7 6 1236 459 283 120 69 chr9 85418510 85418844 -38657328 + L1M5 LINE L1 5399 5749 -415 6 1236 369 0 0 0 chr9 85418869 85418910 -38657262 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1236 1001 316 44 29 chr9 85418976 85419360 -38656812 + MLT1B LTR MaLR 1 390 0 6 1236 1093 133 34 23 chr9 85419859 85420036 -38656136 + B2_Mm2 SINE B2 1 179 -16 6 1236 795 75 0 0 chr9 85420038 85420145 -38656027 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 6 1236 905 173 0 11 chr9 85420326 85420507 -38655665 + GA-rich Low_complexity Low_complexity 2 180 0 6 1236 22 35 0 0 chr9 85420858 85420887 -38655285 + AT_rich Low_complexity Low_complexity 1 29 0 6 1236 327 233 87 22 chr9 85422761 85422853 -38653319 - B3 SINE B2 -6 210 113 6 1236 798 269 100 30 chr9 85422915 85423286 -38652886 + L1M2 LINE L1 5332 5728 -572 6 1236 470 231 25 8 chr9 85424162 85424280 -38651892 + PB1D9 SINE Alu 1 120 0 6 1236 2874 112 5 122 chr9 85424298 85424879 -38651293 - L1_Mur2 LINE L1 -781 5096 4584 6 1236 7770 138 34 23 chr9 85424875 85426189 -38649983 + Lx4A LINE L1 5728 7055 -3 6 1236 22 0 0 0 chr9 85426189 85426211 -38649961 + AT_rich Low_complexity Low_complexity 1 22 0 6 1236 368 325 0 41 chr9 85426237 85426359 -38649813 + B3 SINE B2 1 117 -99 6 1236 450 0 0 0 chr9 85426397 85426447 -38649725 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1236 306 0 0 0 chr9 85426447 85426480 -38649692 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1236 925 296 20 16 chr9 85427322 85427569 -38648603 + B4 SINE B4 2 249 -43 6 1236 547 228 9 17 chr9 85427601 85427717 -38648455 + PB1 SINE Alu 5 119 -8 6 1236 5041 72 7 16 chr9 85427996 85428697 -38647475 - L1Md_F2 LINE L1 0 6582 5888 6 1236 1082 73 0 0 chr9 85429426 85429562 -38646610 + B1_Mus2 SINE Alu 2 137 -10 6 1236 315 0 0 0 chr9 85429562 85429597 -38646575 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1236 212 366 61 18 chr9 85430934 85431048 -38645124 - PB1D7 SINE Alu 0 120 2 6 1236 261 0 0 0 chr9 85431265 85431294 -38644878 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1236 376 349 13 20 chr9 85432665 85432814 -38643358 - MLT1C LTR MaLR 0 467 320 6 1236 2074 191 28 31 chr9 85433113 85433535 -38642637 + MTC LTR MaLR 1 421 0 6 1236 743 272 121 6 chr9 85433807 85434154 -38642018 + L1M3c LINE L1 905 1291 -4850 6 1236 1098 314 90 20 chr9 85434191 85434305 -38641867 - Lx8 LINE L1 -117 7356 7243 6 1236 360 0 0 0 chr9 85434305 85434345 -38641827 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1236 1098 314 90 20 chr9 85434345 85434620 -38641552 - Lx8 LINE L1 -231 7242 6940 6 1236 970 259 87 21 chr9 85434624 85434956 -38641216 - ORR1E LTR MaLR -4 355 2 6 1236 219 88 0 0 chr9 85435189 85435223 -38640949 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1236 2885 78 22 36 chr9 85435294 85435707 -38640465 - MTB_Mm LTR MaLR 0 407 1 6 1236 2511 327 86 16 chr9 85435721 85436706 -38639466 + Lx8 LINE L1 6297 7357 -116 6 1236 1186 41 0 0 chr9 85436706 85436851 -38639321 + B1_Mus1 SINE Alu 2 146 -2 6 1236 2511 327 86 16 chr9 85436851 85436964 -38639208 + Lx8 LINE L1 7358 7471 -2 6 1236 854 287 121 48 chr9 85436984 85437403 -38638769 + L1M3c LINE L1 4010 4455 -1749 6 1236 1158 264 48 55 chr9 85437403 85437415 -38638757 + MTD LTR MaLR 3 14 -405 6 1236 180 77 0 0 chr9 85437415 85437441 -38638731 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1236 1158 264 48 55 chr9 85437441 85437798 -38638374 + MTD LTR MaLR 15 382 -37 6 1236 249 33 0 0 chr9 85437798 85437828 -38638344 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1236 1108 78 0 0 chr9 85437831 85437972 -38638200 - B1_Mus1 SINE Alu -7 141 1 6 1236 1158 264 48 55 chr9 85437972 85438017 -38638155 + MTD LTR MaLR 383 419 0 6 1236 854 287 121 48 chr9 85438017 85438077 -38638095 + L1M3c LINE L1 4456 4524 -1680 6 1236 443 268 122 40 chr9 85438068 85438245 -38637927 + L1MA4 LINE L1 5602 5788 -512 6 1236 348 24 0 0 chr9 85438245 85438286 -38637886 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1236 443 268 122 40 chr9 85438286 85438411 -38637761 + L1MA4 LINE L1 5789 5928 -372 6 1236 717 12 0 0 chr9 85439695 85439777 -38636395 + (TTTTG)n Simple_repeat Simple_repeat 2 83 0 6 1236 184 284 143 39 chr9 85439994 85440071 -38636101 + MIR SINE MIR 32 116 -92 6 1236 180 0 0 0 chr9 85440869 85440889 -38635283 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1236 853 280 90 15 chr9 85441867 85442201 -38633971 - Lx8 LINE L1 -29 7444 7086 6 1236 1478 284 86 16 chr9 85442432 85442933 -38633239 - Lx8 LINE L1 -451 7022 6487 6 1236 716 312 123 72 chr9 85442932 85443311 -38632861 + Lx8 LINE L1 5719 6124 -1349 6 1236 841 248 34 10 chr9 85443311 85443515 -38632657 + B3 SINE B2 1 209 -7 6 1236 716 312 123 72 chr9 85443515 85443578 -38632594 + Lx8 LINE L1 6125 6171 -1302 6 1236 632 13 13 0 chr9 85443578 85443655 -38632517 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1236 716 312 123 72 chr9 85443655 85443909 -38632263 + Lx8 LINE L1 6172 6451 -1022 6 1236 225 154 0 0 chr9 85444486 85444525 -38631647 + T-rich Low_complexity Low_complexity 1 39 0 6 1236 4704 64 28 8 chr9 85444583 85445229 -38630943 - L1_Mus3 LINE L1 0 6638 5980 6 1236 1630 268 70 31 chr9 85446208 85446779 -38629393 + RMER1C Other Other 564 1156 -186 6 1236 29611 112 16 10 chr9 85446778 85451237 -38624935 + L1_Mus1 LINE L1 383 4876 -1007 6 1236 4557 57 34 34 chr9 85451237 85451876 -38624296 - L1Md_F2 LINE L1 0 6582 5944 6 1236 29611 73 6 6 chr9 85451876 85453256 -38622916 + L1_Mus1 LINE L1 4877 6249 -318 6 1236 580 63 10 10 chr9 85453256 85453352 -38622820 + L1_Mus2 LINE L1 6471 6566 0 6 1236 24 0 0 0 chr9 85453396 85453420 -38622752 + AT_rich Low_complexity Low_complexity 1 24 0 6 1236 2448 52 12 9 chr9 85453466 85453796 -38622376 + L1_Mus1 LINE L1 6237 6567 0 6 1236 433 244 22 11 chr9 85453830 85453977 -38622195 + RMER1C Other Other 1199 1328 -14 6 1236 404 67 17 0 chr9 85454124 85454184 -38621988 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 6 1236 996 208 46 46 chr9 85454277 85454604 -38621568 - RLTR15 LTR ERVK -31 328 2 6 1236 399 351 94 30 chr9 85455151 85455386 -38620786 + B4A SINE B4 1 250 -42 6 1236 813 262 26 13 chr9 85455409 85455637 -38620535 - Lx7 LINE L1 -638 7058 6828 6 1236 377 266 0 82 chr9 85455699 85455834 -38620338 + Lx9 LINE L1 6993 7116 -528 6 1236 7256 63 11 9 chr9 85455833 85456834 -38619338 + L1_Mus3 LINE L1 5632 6634 -4 6 1236 668 287 39 15 chr9 85456877 85457115 -38619057 + MTE2a LTR MaLR 116 377 -2 6 1236 281 294 29 0 chr9 85457126 85457194 -38618978 + PB1D9 SINE Alu 31 100 -20 6 1236 813 21 0 0 chr9 85457201 85457296 -38618876 + (GA)n Simple_repeat Simple_repeat 2 96 0 6 154 242 348 54 42 chr9 85458848 85459016 -38617156 + MER3 DNA MER1_type 1 170 -39 6 1237 747 214 106 35 chr9 85459206 85459405 -38616767 + B3 SINE B2 1 213 -3 6 1237 1459 29 0 0 chr9 85459507 85459678 -38616494 - B2_Mm1t SINE B2 -22 171 1 6 1237 666 337 10 29 chr9 85461214 85461419 -38614753 + B3 SINE B2 3 203 -13 6 1237 402 162 0 0 chr9 85461430 85461504 -38614668 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 6 1237 622 322 53 29 chr9 85461510 85461718 -38614454 + B3 SINE B2 4 216 0 6 1237 893 235 28 8 chr9 85461728 85461981 -38614191 + Lx9 LINE L1 7216 7473 -171 7 1237 378 0 0 0 chr9 85461987 85462029 -38614143 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1237 26 74 0 0 chr9 85462110 85462164 -38614008 + AT_rich Low_complexity Low_complexity 1 54 0 7 1237 333 0 0 0 chr9 85462184 85462221 -38613951 + (TATG)n Simple_repeat Simple_repeat 3 39 0 7 1237 852 259 7 39 chr9 85463240 85463511 -38612661 - L1MB3 LINE L1 -52 6131 5868 7 1237 396 0 0 0 chr9 85463511 85463555 -38612617 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1237 393 22 0 0 chr9 85463555 85463600 -38612572 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1237 852 259 7 39 chr9 85463600 85463612 -38612560 - L1MB3 LINE L1 -316 5867 5857 7 1237 275 326 93 14 chr9 85463664 85463804 -38612368 - RMER15 LTR ERVL -65 510 360 7 1237 485 335 57 89 chr9 85465421 85465703 -38610469 + B4 SINE B4 2 274 -18 7 1237 618 126 0 0 chr9 85465725 85465828 -38610344 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 1237 25 0 0 0 chr9 85465828 85465853 -38610319 + AT_rich Low_complexity Low_complexity 1 25 0 7 1237 741 73 0 0 chr9 85466434 85466543 -38609629 + (TG)n Simple_repeat Simple_repeat 1 109 0 7 1237 3305 104 90 2 chr9 85469469 85469981 -38606191 - MT2B2 LTR ERVL -27 557 1 7 1237 209 287 56 56 chr9 85470052 85470159 -38606013 + L3 LINE CR1 2830 2936 -1553 7 1237 978 247 184 45 chr9 85470947 85471350 -38604822 - MLT1C LTR MaLR -8 459 1 7 1237 398 340 95 20 chr9 85471507 85471813 -38604359 + L3 LINE CR1 4055 4383 -106 7 1237 1187 41 0 7 chr9 85471972 85472120 -38604052 + B1_Mus2 SINE Alu 1 147 0 7 1237 217 287 58 67 chr9 85472482 85472689 -38603483 + MIR3 SINE MIR 1 201 -7 7 1237 218 240 123 74 chr9 85472947 85473028 -38603144 + RSINE1 SINE B4 81 165 0 7 1237 718 285 162 22 chr9 85473774 85474237 -38601935 - Lx9 LINE L1 -27 7617 7090 7 1237 2620 203 108 16 chr9 85477311 85477931 -38598241 + RMER6C LTR ERVK 1 677 -13 7 1237 405 0 0 0 chr9 85478249 85478294 -38597878 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1237 484 286 92 30 chr9 85479031 85479295 -38596877 - MLT1A1 LTR MaLR -2 406 77 7 1237 468 0 0 0 chr9 85479538 85479590 -38596582 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1237 255 125 0 0 chr9 85480033 85480073 -38596099 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 7 1237 742 209 157 6 chr9 85480076 85480254 -38595918 - B3 SINE B2 -7 209 5 7 1237 491 157 72 0 chr9 85480311 85480394 -38595778 + B3 SINE B2 2 90 -126 7 1237 319 89 36 0 chr9 85481366 85481422 -38594750 + (TTTTC)n Simple_repeat Simple_repeat 3 60 0 7 1237 389 224 15 74 chr9 85482560 85482695 -38593477 - Lx8 LINE L1 -160 7313 7187 7 1237 378 0 0 0 chr9 85482808 85482850 -38593322 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1237 249 143 0 0 chr9 85483975 85484017 -38592155 + L1ME4a LINE L1 5979 6020 -104 7 1237 751 217 25 55 chr9 85484406 85484606 -38591566 + B3A SINE B2 1 194 -4 7 1237 1087 37 52 0 chr9 85484866 85485002 -38591170 + B1_Mus1 SINE Alu 1 143 -5 7 1237 474 18 0 0 chr9 85485003 85485058 -38591114 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1237 1215 88 0 0 chr9 85485060 85485230 -38590942 + (GGAGA)n Simple_repeat Simple_repeat 2 171 0 7 1237 382 260 0 57 chr9 85485456 85485562 -38590610 + ID_B1 SINE B4 125 224 0 7 1237 261 0 0 0 chr9 85485562 85485591 -38590581 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1237 375 78 0 0 chr9 85485855 85485906 -38590266 + (TTTTC)n Simple_repeat Simple_repeat 2 52 0 7 1237 560 296 18 42 chr9 85485925 85486091 -38590081 + RSINE1 SINE B4 2 163 -2 7 1237 348 64 0 0 chr9 85486103 85486150 -38590022 + (CATA)n Simple_repeat Simple_repeat 2 48 0 7 1237 231 61 0 0 chr9 85486214 85486247 -38589925 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1237 189 303 182 46 chr9 85486368 85486648 -38589524 - L2 LINE L2 -1663 1756 1439 7 1237 1980 148 48 34 chr9 85486887 85487265 -38588907 + Lx4B LINE L1 6672 7054 -4 7 1237 22 0 0 0 chr9 85487529 85487551 -38588621 + AT_rich Low_complexity Low_complexity 1 22 0 7 1237 756 269 53 19 chr9 85488025 85488290 -38587882 - B4A SINE B4 -18 274 1 7 1237 1098 88 0 0 chr9 85488766 85488913 -38587259 - B1_Mus2 SINE Alu 0 147 1 7 1237 319 247 80 0 chr9 85488913 85488956 -38587216 - ORR1B1-int LTR MaLR -862 647 593 7 1237 276 30 0 0 chr9 85489920 85489953 -38586219 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1237 29 28 0 0 chr9 85491617 85491653 -38584519 + AT_rich Low_complexity Low_complexity 1 36 0 7 1237 886 226 5 35 chr9 85491687 85491889 -38584283 - Lx7 LINE L1 -1148 6548 6353 7 1237 192 97 0 0 chr9 85491898 85491929 -38584243 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1237 578 258 98 73 chr9 85492176 85492381 -38583791 + B4A SINE B4 2 211 -81 7 1237 432 0 0 0 chr9 85492431 85492479 -38583693 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1237 441 0 0 0 chr9 85492479 85492527 -38583645 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1237 612 0 0 0 chr9 85492620 85492688 -38583484 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1237 1890 179 42 101 chr9 85492718 85493165 -38583007 + MTC LTR MaLR 1 421 0 7 1237 412 327 67 85 chr9 85494412 85494753 -38581419 - MER102b DNA MER1_type 0 341 7 7 1237 545 82 20 20 chr9 85494925 85495024 -38581148 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 7 1237 201 39 0 0 chr9 85495622 85495648 -38580524 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 1237 1994 224 13 3 chr9 85495648 85496033 -38580139 + Lx6 LINE L1 6895 7283 -177 7 1237 1256 193 42 62 chr9 85496043 85496331 -38579841 - Lx5 LINE L1 -673 6377 6096 7 1237 3088 186 88 16 chr9 85496333 85496955 -38579217 + Lx5 LINE L1 6381 7047 -3 7 1237 1163 256 70 32 chr9 85497522 85497925 -38578247 + MTD LTR MaLR 2 419 0 7 1237 199 386 117 21 chr9 85498390 85498578 -38577594 - MIR SINE MIR -25 237 32 7 1237 202 118 29 0 chr9 85499720 85499754 -38576418 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1237 3965 269 62 32 chr9 85500359 85501578 -38574594 + Lx8 LINE L1 6215 7469 -4 1 1237 896 302 18 36 chr9 85502253 85502583 -38573589 - Lx8 LINE L1 -3 7470 7147 2 1237 468 251 189 88 chr9 85502632 85503157 -38573015 + L1ME3A LINE L1 5299 5876 -297 3 1237 483 18 0 0 chr9 85503157 85503213 -38572959 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1237 579 213 74 74 chr9 85503807 85503969 -38572203 + RSINE1 SINE B4 2 163 -2 5 1237 32 0 0 0 chr9 85504454 85504486 -38571686 + AT_rich Low_complexity Low_complexity 1 32 0 6 1237 243 280 37 74 chr9 85504896 85505004 -38571168 - MLT1D LTR MaLR -347 158 55 7 1237 935 276 50 42 chr9 85505251 85505709 -38570463 - L1MA4A LINE L1 -364 5939 5478 8 1237 348 258 0 0 chr9 85505993 85506090 -38570082 + (TA)n Simple_repeat Simple_repeat 2 98 0 9 1237 1312 41 0 0 chr9 85506262 85506409 -38569763 + B1_Mus2 SINE Alu 1 147 0 1 1237 265 234 31 0 chr9 85506639 85506703 -38569469 - L1MA4A LINE L1 -826 5474 5409 8 1237 272 310 126 44 chr9 85507909 85508115 -38568057 + MLT1C LTR MaLR 204 426 -41 1 1237 630 143 0 0 chr9 85508136 85508241 -38567931 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1237 469 255 29 0 chr9 85508517 85508619 -38567553 + PB1D10 SINE Alu 6 110 -7 1 1237 423 0 0 0 chr9 85509657 85509704 -38566468 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1237 204 182 35 35 chr9 85510526 85510583 -38565589 + T-rich Low_complexity Low_complexity 4 60 0 1 1237 237 292 28 0 chr9 85510624 85510696 -38565476 + A-rich Low_complexity Low_complexity 5 78 0 1 1237 184 222 0 0 chr9 85511294 85511330 -38564842 + MIRc SINE MIR 119 154 -114 1 1237 821 258 44 22 chr9 85511330 85511511 -38564661 + ID_B1 SINE B4 2 186 -38 1 1237 2521 190 125 22 chr9 85511511 85512196 -38563976 - RMER19B LTR ERVK -1 901 147 1 1237 8096 57 3 6 chr9 85512406 85513724 -38562448 - L1Md_F2 LINE L1 0 6582 5266 2 1237 753 181 28 139 chr9 85513725 85513905 -38562267 - RMER19B LTR ERVK -742 160 1 1 1237 435 293 174 32 chr9 85514228 85514475 -38561697 - B4A SINE B4 -6 286 5 2 1237 279 0 0 0 chr9 85514633 85514664 -38561508 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1237 733 169 123 0 chr9 85514671 85514801 -38561371 - B1_Mur4 SINE Alu 0 150 5 2 1237 622 208 63 32 chr9 85514917 85515106 -38561066 - B2_Mm2 SINE B2 0 195 1 2 1237 571 149 59 10 chr9 85515160 85515262 -38560910 + B3 SINE B2 1 107 -109 2 1237 1835 209 199 39 chr9 85518176 85518689 -38557483 - RMER19B LTR ERVK 0 902 308 2 1237 291 247 33 22 chr9 85518707 85518798 -38557374 + (CATA)n Simple_repeat Simple_repeat 1 92 0 2 1237 273 266 51 72 chr9 85518803 85518941 -38557231 - L1MEg2 LINE L1 -5459 993 859 2 1237 24 32 0 0 chr9 85518955 85518986 -38557186 + AT_rich Low_complexity Low_complexity 1 31 0 2 1237 563 351 84 17 chr9 85519002 85519289 -38556883 - MER74A LTR ERVL -69 489 184 3 1237 402 219 82 10 chr9 85519527 85519624 -38556548 + PB1D10 SINE Alu 6 109 -8 3 1237 36382 48 0 3 chr9 85519771 85525513 -38550659 + L1Md_T LINE L1 1 5589 -297 3 1237 9165 26 0 0 chr9 85525513 85526509 -38549663 + L1Md_T LINE L1 5590 6585 0 3 1237 429 299 37 0 chr9 85526528 85526662 -38549510 + B1F SINE Alu 4 142 -7 3 1237 347 282 0 13 chr9 85526671 85526750 -38549422 + ID4 SINE ID 4 81 -2 3 1237 540 56 0 0 chr9 85526921 85526993 -38549179 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1237 483 138 0 0 chr9 85527460 85527547 -38548625 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 1237 523 255 153 21 chr9 85527554 85527698 -38548474 - RSINE1 SINE B4 -1 164 2 3 1237 621 128 0 0 chr9 85528013 85528115 -38548057 + (TC)n Simple_repeat Simple_repeat 2 103 0 3 1237 405 0 0 0 chr9 85528117 85528162 -38548010 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1237 1580 229 138 82 chr9 85528328 85529061 -38547111 + RLTR13D6 LTR ERVK 121 894 -8 4 1237 2511 95 0 6 chr9 85530053 85530393 -38545779 + Lx2 LINE L1 6311 6648 -349 4 1237 1425 104 14 0 chr9 85530385 85530596 -38545576 + Lx2 LINE L1 6770 6983 -14 4 1237 234 293 31 39 chr9 85530639 85530767 -38545405 - Lx9 LINE L1 -15 7629 7503 4 1237 1060 272 28 52 chr9 85531822 85531855 -38544317 - B4 SINE B4 0 292 271 4 1237 2161 143 53 53 chr9 85531855 85532231 -38543941 + ORR1C1 LTR MaLR 1 376 -2 4 1237 1060 272 28 52 chr9 85532231 85532488 -38543684 - B4 SINE B4 -22 270 9 4 1237 1852 178 57 8 chr9 85533171 85533522 -38542650 - ORR1D1 LTR MaLR -2 372 5 4 1237 739 246 123 34 chr9 85533532 85533856 -38542316 + L1MA8 LINE L1 5934 6286 -5 4 1237 275 351 0 83 chr9 85534973 85535094 -38541078 - MER45C DNA Tip100 -114 839 729 4 1237 268 373 160 0 chr9 85535693 85535843 -38540329 - MLT1G LTR MaLR -306 285 112 4 1237 2779 214 39 0 chr9 85536960 85537522 -38538650 - Lx3C LINE L1 -29 6947 6364 4 1237 283 202 24 37 chr9 85538842 85538924 -38537248 - Lx8 LINE L1 -6 7467 7387 5 1237 2251 291 31 3 chr9 85539057 85539723 -38536449 - Lx8 LINE L1 -449 7024 6340 5 1237 362 281 10 0 chr9 85539989 85540098 -38536074 + Lx7 LINE L1 7162 7283 -190 5 1237 224 183 0 40 chr9 85540189 85540263 -38535909 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 5 1237 1224 62 0 14 chr9 85540957 85541105 -38535067 + B1_Mm SINE Alu 2 147 0 5 1237 180 0 0 0 chr9 85541105 85541125 -38535047 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1237 1117 106 6 11 chr9 85541522 85541703 -38534469 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1237 260 111 0 22 chr9 85541703 85541743 -38534429 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1237 1071 112 6 11 chr9 85541743 85541924 -38534248 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 1237 840 183 102 24 chr9 85541956 85542189 -38533983 + ORR1C1 LTR MaLR 12 262 -67 5 1237 903 249 51 60 chr9 85542190 85542614 -38533558 - RLTR11B LTR ERVK -10 431 7 5 1237 349 218 13 0 chr9 85542620 85542698 -38533474 + ORR1C1 LTR MaLR 297 375 -3 5 1237 913 61 112 22 chr9 85542698 85542832 -38533340 + B2_Mm2 SINE B2 1 146 -49 6 1237 195 298 122 53 chr9 85543368 85543499 -38532673 - MIRb SINE MIR -119 149 10 6 1237 609 14 0 0 chr9 85543582 85543652 -38532520 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1237 998 232 53 35 chr9 85543652 85543934 -38532238 - B4A SINE B4 -1 291 5 6 1237 2565 149 17 12 chr9 85545680 85546095 -38530077 - MTD LTR MaLR 0 419 3 6 1237 184 303 105 35 chr9 85546641 85546812 -38529360 + L2c LINE L2 2877 3059 -360 6 1237 284 286 0 0 chr9 85546873 85546950 -38529222 - ID4 SINE ID -4 79 3 6 1237 205 213 36 107 chr9 85547080 85547164 -38529008 + L2c LINE L2 3267 3344 -43 6 1237 408 306 59 0 chr9 85548572 85548742 -38527430 + MER53 DNA hAT 1 180 -13 6 1237 3113 58 0 0 chr9 85549262 85549621 -38526551 - L1_Mus1 LINE L1 0 6567 6209 6 1237 2277 30 0 0 chr9 85549621 85549888 -38526284 + L1_Mus1 LINE L1 5881 6147 -420 6 1237 597 87 0 46 chr9 85550928 85551037 -38525135 + (GAAAA)n Simple_repeat Simple_repeat 2 105 0 6 1237 1223 89 0 6 chr9 85551037 85551217 -38524955 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 7 1237 256 299 0 49 chr9 85551333 85551435 -38524737 + GA-rich Low_complexity Low_complexity 5 101 0 7 1237 704 285 50 6 chr9 85551730 85551910 -38524262 + B3 SINE B2 1 188 -28 7 1237 234 0 0 0 chr9 85552025 85552051 -38524121 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1237 3560 259 47 52 chr9 85552348 85552452 -38523720 - Lx9 LINE L1 -272 7372 7272 7 1237 2307 120 176 3 chr9 85552452 85552811 -38523361 + MTC LTR MaLR 1 421 0 7 1237 3560 259 47 52 chr9 85552811 85553731 -38522441 - Lx9 LINE L1 -373 7271 6349 7 1237 852 104 0 0 chr9 85553731 85553856 -38522316 + (TATATG)n Simple_repeat Simple_repeat 4 128 0 7 1237 3560 259 47 52 chr9 85553856 85554051 -38522121 - Lx9 LINE L1 -1296 6348 6158 7 1237 1426 234 115 6 chr9 85554503 85554868 -38521304 + MTD LTR MaLR 1 405 -14 7 1237 1372 290 95 24 chr9 85555776 85556363 -38519809 + Lx8 LINE L1 6658 7286 -187 7 1237 941 105 6 0 chr9 85556367 85556538 -38519634 + (TC)n Simple_repeat Simple_repeat 2 173 0 7 1237 288 0 0 0 chr9 85556538 85556569 -38519603 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1237 26 30 0 0 chr9 85556691 85556724 -38519448 + AT_rich Low_complexity Low_complexity 1 33 0 8 1237 408 252 131 0 chr9 85557123 85557230 -38518942 + RSINE1 SINE B4 2 122 -43 8 1237 35 41 0 0 chr9 85557238 85557287 -38518885 + AT_rich Low_complexity Low_complexity 1 49 0 8 1237 926 135 113 5 chr9 85557533 85557719 -38518453 + Lx5 LINE L1 6845 7050 0 8 1237 201 74 0 0 chr9 85557920 85557947 -38518225 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1237 661 225 93 11 chr9 85559012 85559250 -38516922 - L1MA4 LINE L1 -203 5977 5722 8 1237 484 271 19 0 chr9 85560756 85560863 -38515309 + B1_Mur1 SINE Alu 40 148 -1 8 1237 205 162 0 0 chr9 85561158 85561195 -38514977 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 8 1237 415 288 155 33 chr9 85561222 85561649 -38514523 - L1MA4 LINE L1 -372 5928 5450 8 1237 262 156 31 0 chr9 85561655 85561719 -38514453 + GA-rich Low_complexity Low_complexity 2 67 0 9 1237 326 231 47 19 chr9 85561824 85561930 -38514242 + L1_Rod LINE L1 5112 5220 -627 9 1237 992 196 113 5 chr9 85561974 85562316 -38513856 + MTC LTR MaLR 3 414 -5 9 1237 272 255 31 21 chr9 85562328 85562424 -38513748 + L1_Mur3 LINE L1 5305 5401 -479 9 1237 439 299 29 17 chr9 85562444 85562682 -38513490 + L1M2 LINE L1 4666 4906 -1237 9 1237 222 118 0 0 chr9 85563395 85563429 -38512743 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1237 757 233 0 14 chr9 85564278 85564426 -38511746 + B1_Mus2 SINE Alu 1 146 -1 9 1237 3613 129 12 134 chr9 85564495 85564815 -38511357 - RMER6A LTR ERVK 0 756 457 9 1237 285 100 0 0 chr9 85564815 85564865 -38511307 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 9 1237 3613 129 12 134 chr9 85564865 85565342 -38510830 - RMER6A LTR ERVK -300 456 56 9 1237 1404 215 129 8 chr9 85565821 85566161 -38510011 - MTD LTR MaLR -20 399 21 9 1237 279 0 0 0 chr9 85566161 85566192 -38509980 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1237 1404 215 129 8 chr9 85566192 85566207 -38509965 - MTD LTR MaLR -399 20 1 9 1237 318 182 30 10 chr9 85567230 85567330 -38508842 + GA-rich Low_complexity Low_complexity 2 103 0 1 1237 3318 20 8 8 chr9 85569375 85569770 -38506402 - MTA_Mm LTR MaLR 0 396 2 1 1237 225 0 0 0 chr9 85569920 85569945 -38506227 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1237 207 0 0 0 chr9 85570144 85570167 -38506005 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1237 577 258 77 17 chr9 85570654 85570835 -38505337 - B3A SINE B2 -6 192 1 1 1237 376 331 82 45 chr9 85571201 85571495 -38504677 + MLT1A1 LTR MaLR 74 408 0 1 1237 1546 216 99 8 chr9 85572827 85573181 -38502991 + MTD LTR MaLR 21 406 -13 1 1237 228 250 113 26 chr9 85573089 85573204 -38502968 + LTR77 LTR ERV1 216 340 -282 1 1237 304 321 123 84 chr9 85573513 85574034 -38502138 - L1MD2 LINE L1 -7 6352 5812 1 1237 374 209 210 46 chr9 85574167 85574406 -38501766 - L1MD2 LINE L1 -603 5756 5479 1 1237 533 130 0 0 chr9 85574422 85574514 -38501658 - RMER1B Other Other -16 1050 959 1 1237 335 287 60 7 chr9 85574549 85574700 -38501472 - L1MD2 LINE L1 -900 5459 5301 1 1237 207 0 0 0 chr9 85574723 85574746 -38501426 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1 1237 320 289 47 0 chr9 85575351 85575479 -38500693 - L1MD LINE L1 -603 5756 5623 1 1237 1552 223 94 61 chr9 85575558 85576017 -38500155 + RMER19C LTR ERVK 138 611 0 1 1237 244 245 0 0 chr9 85577320 85577369 -38498803 + PB1D9 SINE Alu 1 49 -71 1 1237 618 221 100 41 chr9 85577700 85577754 -38498418 + URR1B DNA MER1_type 6 56 -169 1 1237 189 0 0 0 chr9 85577754 85577775 -38498397 + (G)n Simple_repeat Simple_repeat 1 21 0 1 1237 618 221 100 41 chr9 85577775 85577890 -38498282 + URR1B DNA MER1_type 57 185 -40 1 1237 704 296 108 47 chr9 85577989 85578591 -38497581 + Lx8 LINE L1 5695 6310 -1163 1 1237 430 204 99 4 chr9 85578747 85578875 -38497297 + B3 SINE B2 63 195 -3 1 1237 252 0 0 0 chr9 85579602 85579630 -38496542 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1237 332 154 167 14 chr9 85579663 85579760 -38496412 - B2_Mm2 SINE B2 -14 181 47 1 1237 1112 136 6 28 chr9 85579808 85579989 -38496183 - B2_Mm1t SINE B2 -15 178 2 1 1237 450 322 22 17 chr9 85582348 85582528 -38493644 - B3A SINE B2 -17 181 1 1 1237 279 0 0 0 chr9 85583029 85583060 -38493112 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1237 1995 197 83 8 chr9 85583110 85583488 -38492684 + RLTR16 LTR ERVK 1 413 -92 1 1237 504 72 0 0 chr9 85583488 85583557 -38492615 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1237 1995 197 83 8 chr9 85583557 85583648 -38492524 + RLTR16 LTR ERVK 414 505 0 1 1237 291 279 0 12 chr9 85583654 85583734 -38492438 + PB1D9 SINE Alu 35 113 -7 1 1237 679 35 12 0 chr9 85584666 85584752 -38491420 - B1_Mus2 SINE Alu -1 146 60 1 1237 441 230 0 0 chr9 85584847 85584934 -38491238 + ORR1D2 LTR MaLR 282 368 -2 1 1237 887 256 106 23 chr9 85585108 85585372 -38490800 - ORR1D2 LTR MaLR -84 286 1 1 1237 1082 102 0 0 chr9 85586069 85586216 -38489956 + B1_Mus1 SINE Alu 2 148 0 1 1237 26 50 0 0 chr9 85586486 85586526 -38489646 + AT_rich Low_complexity Low_complexity 1 40 0 1 1237 181 357 0 41 chr9 85586746 85586819 -38489353 - L4 LINE RTE -381 1648 1579 1 1237 22 70 0 0 chr9 85587640 85587683 -38488489 + AT_rich Low_complexity Low_complexity 1 43 0 1 1237 672 203 45 0 chr9 85587920 85588053 -38488119 + B1_Mur1 SINE Alu 2 140 -9 1 1237 189 94 0 0 chr9 85588054 85588086 -38488086 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1237 1290 97 11 0 chr9 85588364 85588540 -38487632 + B2_Mm1t SINE B2 2 179 -14 1 1237 343 111 6 44 chr9 85588587 85588699 -38487473 + B2_Mm2 SINE B2 47 189 -6 1 1237 701 224 7 53 chr9 85589739 85589890 -38486282 + ID_B1 SINE B4 81 224 0 1 1238 338 283 115 0 chr9 85590024 85590137 -38486035 + ID_B1 SINE B4 92 217 -7 1 1238 386 369 48 18 chr9 85590169 85590442 -38485730 + L1ME1 LINE L1 5726 6006 -173 1 1238 627 243 231 0 chr9 85591103 85591341 -38484831 + MTD LTR MaLR 1 293 -126 1 1238 285 239 45 0 chr9 85594024 85594091 -38482081 + ID4_ SINE ID 3 72 -11 1 1238 26 30 0 0 chr9 85594161 85594194 -38481978 + AT_rich Low_complexity Low_complexity 1 33 0 1 1238 21 36 0 0 chr9 85596438 85596466 -38479706 + AT_rich Low_complexity Low_complexity 1 28 0 1 1238 1228 27 0 0 chr9 85597854 85598000 -38478172 + B1_Mus2 SINE Alu 2 147 0 1 1238 376 354 20 16 chr9 85598152 85598396 -38477776 + Lx9 LINE L1 7197 7441 -203 1 1238 216 97 0 0 chr9 85598406 85598437 -38477735 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1238 25 0 0 0 chr9 85598557 85598582 -38477590 + AT_rich Low_complexity Low_complexity 1 25 0 1 1238 2796 200 111 8 chr9 85599078 85599744 -38476428 + Lx7 LINE L1 6632 7366 -330 1 1238 273 128 0 0 chr9 85599762 85599809 -38476363 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1238 460 220 77 50 chr9 85599837 85600019 -38476153 + Lx7 LINE L1 7510 7696 0 1 1238 821 144 13 52 chr9 85600841 85600995 -38475177 + B1_Mus1 SINE Alu 1 148 0 1 1238 23 0 0 0 chr9 85601780 85601803 -38474369 + AT_rich Low_complexity Low_complexity 1 23 0 1 1238 597 97 128 8 chr9 85602058 85602183 -38473989 + Lx LINE L1 6515 6654 0 1 1238 814 70 269 7 chr9 85602699 85602844 -38473328 + B2_Mm2 SINE B2 2 184 -11 1 1238 26 0 0 0 chr9 85603007 85603033 -38473139 + AT_rich Low_complexity Low_complexity 1 26 0 1 1238 541 264 7 20 chr9 85603831 85603978 -38472194 + RSINE1 SINE B4 14 158 -7 1 1238 237 108 0 0 chr9 85604741 85604778 -38471394 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1238 519 251 48 30 chr9 85604944 85605112 -38471060 - B4A SINE B4 -120 172 2 1 1238 1895 204 86 16 chr9 85605893 85606322 -38469850 + RLTR12A LTR ERVK 1 459 -109 1 1238 202 369 44 69 chr9 85608138 85608298 -38467874 + MIR3 SINE MIR 17 172 -36 1 1238 309 298 47 28 chr9 85609409 85609516 -38466656 + PB1D10 SINE Alu 1 109 -8 1 1238 581 210 78 28 chr9 85610867 85611009 -38465163 - B1_Mur1 SINE Alu 0 149 1 1 1238 545 262 77 75 chr9 85611464 85611706 -38464466 - MTE2a LTR MaLR 0 379 25 1 1238 1421 101 0 5 chr9 85616703 85616892 -38459280 + B2_Mm2 SINE B2 2 189 -6 1 1238 216 0 0 0 chr9 85618252 85618276 -38457896 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1238 1147 80 0 0 chr9 85618276 85618413 -38457759 - B1_Mus2 SINE Alu -10 137 1 1 1238 399 245 37 28 chr9 85618606 85618715 -38457457 - PB1D10 SINE Alu -5 112 3 1 1238 1262 61 0 0 chr9 85619174 85619321 -38456851 + B1_Mus1 SINE Alu 2 148 0 1 1238 27 0 0 0 chr9 85620572 85620599 -38455573 + AT_rich Low_complexity Low_complexity 1 27 0 1 1238 251 329 0 0 chr9 85620906 85620985 -38455187 + Kanga11a DNA Tc2 4 82 -888 1 1238 231 310 194 31 chr9 85622864 85623024 -38453148 - MER20 DNA MER1_type 0 219 34 1 1238 226 325 25 12 chr9 85623636 85623717 -38452455 + ID4_ SINE ID 2 83 0 1 1238 440 266 166 19 chr9 85623785 85623942 -38452230 + B3A SINE B2 3 182 -16 1 1238 315 0 0 0 chr9 85625114 85625149 -38451023 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1238 216 0 0 0 chr9 85625149 85625172 -38451000 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1238 265 302 236 0 chr9 85625177 85625283 -38450889 - RSINE1 SINE B4 -25 140 10 1 1238 221 240 13 0 chr9 85625948 85626023 -38450149 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 1238 342 0 0 0 chr9 85627060 85627098 -38449074 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1238 1198 68 0 33 chr9 85627198 85627335 -38448837 + B1_Mus1 SINE Alu 2 138 -10 1 1238 198 0 0 0 chr9 85627335 85627357 -38448815 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1238 1198 68 0 33 chr9 85627357 85627371 -38448801 + B1_Mus1 SINE Alu 139 148 0 1 1238 284 297 107 99 chr9 85627512 85627755 -38448417 + ORR1E LTR MaLR 12 256 -103 1 1238 950 64 0 0 chr9 85627852 85627977 -38448195 - B1_Mus1 SINE Alu -21 127 3 1 1238 213 0 53 26 chr9 85627982 85628020 -38448152 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1238 272 289 51 10 chr9 85629159 85629257 -38446915 - ID_B1 SINE B4 -10 214 113 1 1238 637 307 78 52 chr9 85629595 85629863 -38446309 + B4A SINE B4 7 281 -11 1 1238 203 234 0 0 chr9 85629882 85629929 -38446243 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1238 5335 118 52 3 chr9 85630231 85631006 -38445166 + Lx3A LINE L1 6169 6981 0 1 1238 246 32 0 0 chr9 85631393 85631424 -38444748 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1238 604 238 41 0 chr9 85631427 85631574 -38444598 - B3A SINE B2 -44 154 2 1 1238 26 0 0 0 chr9 85632882 85632908 -38443264 + AT_rich Low_complexity Low_complexity 1 26 0 1 1238 220 339 46 0 chr9 85633218 85633283 -38442889 + ID4_ SINE ID 12 79 -4 1 1238 1430 104 71 0 chr9 85634145 85634357 -38441815 + RMER6D LTR ERVK 3 229 -491 1 1238 1824 172 73 17 chr9 85634351 85634706 -38441466 + RMER6D LTR ERVK 342 716 -4 1 1238 1280 87 92 0 chr9 85634793 85634966 -38441206 + B2_Mm2 SINE B2 1 189 -6 1 1238 1190 69 7 0 chr9 85635098 85635243 -38440929 + B1_Mus1 SINE Alu 3 148 0 1 1238 238 26 0 49 chr9 85635245 85635286 -38440886 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1238 247 353 0 0 chr9 85635490 85635558 -38440614 - ID4_ SINE ID -10 73 6 1 1238 408 174 14 0 chr9 85635560 85635629 -38440543 + MER57C2 LTR ERV1 335 404 -30 1 1238 3150 200 54 47 chr9 85635878 85636623 -38439549 + Lx7 LINE L1 6804 7553 -143 1 1238 854 146 0 23 chr9 85636634 85636767 -38439405 - B1_Mur2 SINE Alu 0 149 20 1 1238 332 188 50 141 chr9 85636679 85636778 -38439394 - MT2B LTR ERVL -344 257 168 2 1238 464 232 0 34 chr9 85636778 85636925 -38439247 + Lx6 LINE L1 7319 7460 0 2 1238 180 125 0 0 chr9 85637760 85637792 -38438380 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1238 270 0 0 0 chr9 85637795 85637825 -38438347 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1238 25 0 0 0 chr9 85638613 85638638 -38437534 + AT_rich Low_complexity Low_complexity 1 25 0 2 1238 303 85 0 0 chr9 85638638 85638685 -38437487 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1238 634 226 77 23 chr9 85638995 85639293 -38436879 + ORR1D1 LTR MaLR 6 369 -5 2 1238 2250 297 88 42 chr9 85639552 85639941 -38436231 + Lx8 LINE L1 6519 6948 -525 2 1238 1566 73 0 5 chr9 85639941 85640100 -38436072 + B2_Mm1t SINE B2 2 160 -33 2 1238 222 37 0 0 chr9 85640100 85640127 -38436045 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2 1238 1566 73 0 5 chr9 85640127 85640160 -38436012 + B2_Mm1t SINE B2 161 193 0 2 1238 2250 297 88 42 chr9 85640160 85640680 -38435492 + Lx8 LINE L1 6949 7470 -3 2 1238 240 109 0 52 chr9 85640680 85640738 -38435434 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1238 1468 35 41 0 chr9 85640770 85640941 -38435231 + B2_Mm2 SINE B2 4 181 -14 2 1238 1044 202 30 85 chr9 85640995 85641322 -38434850 + ORR1D1 LTR MaLR 5 331 -47 2 1238 1150 102 65 6 chr9 85641329 85641497 -38434675 + B2_Mm1t SINE B2 2 179 -14 2 1238 225 0 0 0 chr9 85641620 85641645 -38434527 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2 1238 192 77 0 0 chr9 85641653 85641679 -38434493 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2 1238 333 0 0 0 chr9 85642022 85642059 -38434113 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1238 510 253 124 18 chr9 85644027 85644196 -38431976 + MIRb SINE MIR 54 240 -28 2 1238 472 332 65 43 chr9 85645832 85646505 -38429667 + L1M2 LINE L1 1942 2629 -4220 2 1238 238 270 46 112 chr9 85646619 85646815 -38429357 + L1M2 LINE L1 2759 2941 -3909 2 1238 1273 68 0 0 chr9 85646819 85646967 -38429205 + B1_Mus1 SINE Alu 1 148 0 2 1238 1074 267 7 25 chr9 85647186 85647466 -38428706 + Lx9 LINE L1 6933 7207 -437 2 1238 253 105 0 0 chr9 85647489 85647527 -38428645 - ORR1B2 LTR MaLR -7 360 323 2 1238 394 62 138 15 chr9 85647516 85647581 -38428591 - ORR1B2 LTR MaLR -294 73 1 2 1238 329 358 30 18 chr9 85647581 85647749 -38428423 + Lx9 LINE L1 7207 7376 -268 2 1238 372 43 0 0 chr9 85647772 85647818 -38428354 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1238 747 347 14 19 chr9 85647949 85648342 -38427830 + L1M2 LINE L1 3109 3485 -3357 2 1238 191 36 0 35 chr9 85648342 85648371 -38427801 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1238 506 350 44 71 chr9 85648371 85648542 -38427630 + L1M2 LINE L1 3486 3658 -3184 2 1238 1030 233 181 3 chr9 85648548 85648858 -38427314 - ORR1D1 LTR MaLR -5 369 5 2 1238 1240 311 76 65 chr9 85648861 85649114 -38427058 + L1M2 LINE L1 3642 3880 -2965 2 1238 1301 34 0 0 chr9 85649114 85649260 -38426912 + B1_Mm SINE Alu 2 147 0 2 1238 1335 67 0 0 chr9 85649264 85649443 -38426729 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 1238 1240 311 76 65 chr9 85649443 85649653 -38426519 + L1M2 LINE L1 3881 4080 -2765 2 1238 739 199 92 0 chr9 85649653 85649784 -38426388 + B1_Mur4 SINE Alu 1 143 -7 2 1238 1163 107 0 6 chr9 85649789 85649968 -38426204 + (GGAGA)n Simple_repeat Simple_repeat 2 179 0 2 1238 504 0 0 0 chr9 85649968 85650023 -38426149 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 2 1238 1240 311 76 65 chr9 85650023 85650684 -38425488 + L1M2 LINE L1 4081 4786 -2059 2 1238 578 300 61 112 chr9 85650684 85651078 -38425094 + MTE2a LTR MaLR 1 374 -5 2 1238 780 296 24 1 chr9 85651085 85651394 -38424778 + L1M2 LINE L1 4762 5077 -1505 2 1238 514 204 0 58 chr9 85651525 85651598 -38424574 + B3 SINE B2 2 68 -148 2 1238 1901 194 66 11 chr9 85651598 85651962 -38424210 + ORR1C2 LTR MaLR 1 384 0 2 1238 514 204 0 58 chr9 85651962 85651992 -38424180 + B3 SINE B2 69 98 -118 2 1238 297 323 0 31 chr9 85652136 85652264 -38423908 + L1M2 LINE L1 6284 6407 -598 2 1238 249 318 144 6 chr9 85652379 85652553 -38423619 + L1ME2z LINE L1 6233 6430 -14 2 1238 219 103 0 0 chr9 85652890 85652929 -38423243 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1238 7939 95 23 77 chr9 85652938 85654175 -38421997 - Lx2 LINE L1 -1 6996 5827 2 1238 3689 51 0 52 chr9 85654170 85654646 -38421526 - L1Md_F2 LINE L1 0 6582 6132 2 1238 2628 132 105 4 chr9 85654646 85655099 -38421073 - L1_Mm LINE L1 -42 5841 5366 2 1238 1320 28 0 0 chr9 85655182 85655326 -38420846 - B1_Mm SINE Alu -3 144 1 2 1238 527 244 23 16 chr9 85655666 85655795 -38420377 + B1F SINE Alu 20 149 0 2 1238 350 237 103 0 chr9 85655981 85656120 -38420052 + L1MD3 LINE L1 7728 7984 -11 2 1238 813 242 68 142 chr9 85657080 85657489 -38418683 - MTE2a LTR MaLR 0 379 1 2 1238 2289 134 18 146 chr9 85657710 85657831 -38418341 - RLTR11B LTR ERVK 0 453 393 2 1238 1125 95 7 7 chr9 85657831 85657979 -38418193 - B1_Mus1 SINE Alu 0 148 1 2 1238 2289 134 18 146 chr9 85657979 85658372 -38417800 - RLTR11B LTR ERVK -61 392 5 2 1238 429 240 92 101 chr9 85658649 85658750 -38417422 - L1_Mm LINE L1 -1393 4750 4663 2 1238 189 0 0 0 chr9 85658750 85658771 -38417401 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1238 429 240 92 101 chr9 85658771 85658887 -38417285 - L1_Mm LINE L1 -1481 4662 4535 2 1238 371 287 204 65 chr9 85658874 85659004 -38417168 + L1MB1 LINE L1 4729 4862 -1281 2 1238 324 0 0 0 chr9 85659004 85659040 -38417132 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1238 371 287 204 65 chr9 85659040 85659203 -38416969 + L1MB1 LINE L1 4863 5063 -1080 2 1238 3319 117 41 50 chr9 85659251 85659789 -38416383 + RMER16 LTR ERVK 1 533 0 2 1238 304 250 0 12 chr9 85659789 85659863 -38416309 + HAL1-2a_MD LINE L1 2427 2500 -524 2 1238 889 259 149 19 chr9 85659979 85660851 -38415321 + L1MB1 LINE L1 5126 6119 -181 2 1238 238 238 15 31 chr9 85660905 85660970 -38415202 - MIRc SINE MIR -130 138 75 2 1238 294 73 0 0 chr9 85661180 85661221 -38414951 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1238 539 250 60 38 chr9 85661514 85661647 -38414525 - RSINE1 SINE B4 -9 156 21 2 1238 494 241 274 24 chr9 85662473 85662685 -38413487 + MER90a LTR ERV1 346 610 -4 2 1238 198 0 0 0 chr9 85663491 85663513 -38412659 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1238 234 0 0 0 chr9 85663513 85663539 -38412633 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1238 3390 71 0 2 chr9 85664444 85664852 -38411320 - MTB_Mm LTR MaLR 0 407 1 2 1238 1193 62 17 6 chr9 85665616 85665793 -38410379 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 1238 1135 75 7 26 chr9 85665795 85665946 -38410226 - B1_Mus1 SINE Alu 0 148 1 2 1238 261 222 228 22 chr9 85666056 85666148 -38410024 - RMER17C LTR ERVK -298 112 2 2 1238 278 325 96 16 chr9 85666152 85666277 -38409895 + B4A SINE B4 118 252 -40 2 1238 366 42 0 0 chr9 85666372 85666420 -38409752 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1238 437 244 102 44 chr9 85666537 85666674 -38409498 + B2_Mm2 SINE B2 1 145 -50 2 1238 441 0 0 0 chr9 85666684 85666733 -38409439 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1238 523 282 142 30 chr9 85666788 85667161 -38409011 - Lx9 LINE L1 -15 7629 7215 2 1238 569 308 38 101 chr9 85667200 85667456 -38408716 - Lx9 LINE L1 -1120 6524 6271 2 1238 4917 54 13 10 chr9 85667456 85668055 -38408117 - L1_Mus1 LINE L1 0 6567 5967 2 1238 569 316 46 89 chr9 85668055 85668359 -38407813 - Lx9 LINE L1 -1374 6270 5880 2 1238 1782 186 48 17 chr9 85668370 85668743 -38407429 + Lx6 LINE L1 5501 5908 -1552 2 1238 225 246 43 0 chr9 85669641 85669710 -38406462 + LTR37A LTR ERV1 77 148 -278 2 1238 727 175 0 0 chr9 85669885 85670005 -38406167 + B1_Mur4 SINE Alu 2 121 -29 2 1238 255 281 0 15 chr9 85670098 85670117 -38406055 + polypurine Low_complexity Low_complexity 3 21 0 2 1238 1336 57 106 22 chr9 85670117 85670296 -38405876 + B2_Mm2 SINE B2 2 195 0 2 1238 255 281 0 15 chr9 85670296 85670341 -38405831 + polypurine Low_complexity Low_complexity 22 66 0 2 1238 795 185 14 11 chr9 85670504 85670681 -38405491 - ORR1C2 LTR MaLR 0 394 224 2 1238 253 184 20 0 chr9 85670711 85670760 -38405412 - ORR1C2 LTR MaLR -369 50 1 2 1238 212 86 0 28 chr9 85670976 85671012 -38405160 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 2 1238 306 325 42 99 chr9 85672689 85672901 -38403271 + RMER2 LTR ERV1 368 567 0 2 1238 288 0 0 0 chr9 85674181 85674213 -38401959 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1238 912 227 169 7 chr9 85675118 85675397 -38400775 - ORR1D1 LTR MaLR 0 374 51 2 1238 21 57 0 0 chr9 85675409 85675444 -38400728 + AT_rich Low_complexity Low_complexity 1 35 0 2 1238 1269 131 94 28 chr9 85677384 85677596 -38398576 + URR1A DNA MER1_type 1 226 0 2 1238 269 218 0 22 chr9 85677654 85677743 -38398429 + CT-rich Low_complexity Low_complexity 4 90 0 2 1238 2457 80 19 12 chr9 85677841 85678213 -38397959 + BGLII LTR ERVK 47 421 0 2 1238 310 305 69 28 chr9 85678392 85678537 -38397635 - MIRb SINE MIR -27 241 91 2 1238 288 0 0 0 chr9 85678832 85678864 -38397308 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1238 1102 103 6 57 chr9 85678971 85679146 -38397026 + B2_Mm1t SINE B2 2 167 -26 2 1238 317 111 327 27 chr9 85679234 85679344 -38396828 + B2_Mm2 SINE B2 48 190 -5 2 1238 232 189 63 127 chr9 85679368 85679447 -38396725 + Charlie6 DNA MER1_type 2202 2275 -1225 2 1238 378 0 0 0 chr9 85680826 85680868 -38395304 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1238 289 308 153 36 chr9 85682134 85682383 -38393789 + MLT1G3 LTR MaLR 106 383 -212 2 1238 474 33 0 0 chr9 85682511 85682571 -38393601 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1238 1192 22 0 29 chr9 85682595 85682734 -38393438 + B1_Mus1 SINE Alu 3 137 -11 2 1238 225 0 0 0 chr9 85682734 85682759 -38393413 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1238 507 285 142 43 chr9 85682768 85683050 -38393122 - Lx8 LINE L1 -51 7422 7113 2 1238 204 298 62 46 chr9 85683133 85683263 -38392909 - MIR SINE MIR -85 177 46 2 1238 1488 255 127 36 chr9 85684241 85684275 -38391897 - Lx8 LINE L1 -444 7029 7003 2 1238 342 0 0 0 chr9 85684275 85684313 -38391859 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1238 1373 90 11 0 chr9 85684313 85684490 -38391682 - B2_Mm1t SINE B2 -14 179 1 2 1238 1488 255 127 36 chr9 85684490 85685004 -38391168 - Lx8 LINE L1 -471 7002 6431 2 1238 2201 111 10 19 chr9 85685236 85685548 -38390624 + RLTR27 LTR ERVK 1 309 0 2 1238 435 119 0 0 chr9 85685628 85685695 -38390477 + (TAA)n Simple_repeat Simple_repeat 3 69 0 2 1238 204 276 80 11 chr9 85685703 85685791 -38390381 - L2a LINE L2 -1 3425 3332 2 1238 807 136 61 54 chr9 85686539 85686687 -38389485 + B1_Mur4 SINE Alu 2 150 0 2 1238 275 319 115 6 chr9 85687094 85687277 -38388895 + MIRb SINE MIR 26 228 -40 2 1238 218 204 0 20 chr9 85687400 85687450 -38388722 + (CATA)n Simple_repeat Simple_repeat 2 50 0 2 1238 265 250 12 24 chr9 85687491 85687573 -38388599 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 3 1238 197 196 20 0 chr9 85687663 85687714 -38388458 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1238 1782 130 86 7 chr9 85687794 85688097 -38388075 - IAPEY3_LTR LTR ERVK -5 327 1 3 1238 301 245 148 69 chr9 85688097 85688197 -38387975 - RSINE1 SINE B4 -52 113 6 3 1238 254 326 21 21 chr9 85688338 85688432 -38387740 - Lx8 LINE L1 -161 7312 7219 3 1238 261 281 12 12 chr9 85688714 85688797 -38387375 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1238 601 302 104 32 chr9 85688825 85689075 -38387097 - B4A SINE B4 -22 270 3 3 1238 510 257 185 93 chr9 85689929 85690272 -38385900 + MTD LTR MaLR 6 405 -14 3 1238 444 19 0 0 chr9 85690405 85690458 -38385714 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1238 1236 41 14 0 chr9 85690472 85690617 -38385555 - B1_Mus1 SINE Alu 0 148 2 3 1238 1950 261 96 43 chr9 85690625 85691377 -38384795 - L1MA7 LINE L1 -5 6286 5495 3 1238 203 167 0 0 chr9 85691421 85691457 -38384715 + GA-rich Low_complexity Low_complexity 1 36 0 3 1238 442 333 135 8 chr9 85691500 85691745 -38384427 - B4A SINE B4 -16 276 1 3 1238 525 277 29 0 chr9 85691746 85691883 -38384289 - L1MA7 LINE L1 -830 5482 5342 3 1238 2730 131 18 0 chr9 85692006 85692389 -38383783 - ORR1B1 LTR MaLR 0 394 5 3 1238 6933 190 73 15 chr9 85692393 85693820 -38382352 - ORR1B1-int LTR MaLR 0 1509 1 3 1238 2136 168 31 31 chr9 85693824 85694210 -38381962 - ORR1B1 LTR MaLR -8 386 1 3 1238 393 208 145 8 chr9 85694427 85694558 -38381614 - MIR3 SINE MIR -15 193 45 3 1238 261 57 0 0 chr9 85694579 85694614 -38381558 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1238 963 180 146 58 chr9 85694756 85694962 -38381210 - URR1B DNA MER1_type 0 225 2 3 1238 267 31 0 0 chr9 85695524 85695556 -38380616 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 3 1238 1279 55 152 0 chr9 85695625 85695789 -38380383 - B2_Mm2 SINE B2 -5 190 2 3 1238 1780 111 25 11 chr9 85695836 85696118 -38380054 + ORR1A4 LTR MaLR 1 286 -43 3 1238 263 254 16 0 chr9 85697015 85697078 -38379094 - MER5B DNA MER1_type -114 64 1 3 1238 359 206 9 85 chr9 85697897 85698003 -38378169 + RMER1C Other Other 1243 1340 -2 3 1238 1168 82 0 33 chr9 85698109 85698261 -38377911 - B1_Mus2 SINE Alu 0 147 1 3 1238 1038 306 89 10 chr9 85699487 85699902 -38376270 + MLT1C LTR MaLR 13 460 -7 3 1238 287 322 107 0 chr9 85699912 85700061 -38376111 - L1MC LINE L1 -2026 5856 5692 3 1238 372 22 0 0 chr9 85702227 85702272 -38373900 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1238 831 160 7 53 chr9 85702364 85702476 -38373696 - B1_Mur1 SINE Alu -3 146 38 3 1238 2837 92 55 3 chr9 85702476 85702856 -38373316 - MTB LTR MaLR 0 400 1 3 1238 831 160 7 53 chr9 85702856 85702895 -38373277 - B1_Mur1 SINE Alu -112 37 2 3 1238 431 307 198 43 chr9 85702904 85703091 -38373081 - B4 SINE B4 -71 221 6 3 1238 4850 251 82 5 chr9 85703217 85704360 -38371812 - Lx6 LINE L1 -5 7455 6225 3 1238 300 225 0 0 chr9 85705046 85705118 -38371054 + T-rich Low_complexity Low_complexity 9 80 0 3 1238 1301 41 0 0 chr9 85705118 85705265 -38370907 - B1_Mus1 SINE Alu 0 148 2 3 1238 410 242 82 143 chr9 85705476 85705770 -38370402 + L1MA4 LINE L1 5751 6026 -274 3 1238 253 390 50 0 chr9 85706055 85706155 -38370017 - MIRm SINE MIR -138 138 34 3 1238 780 67 16 16 chr9 85706161 85706282 -38369890 - L1_Mus3 LINE L1 -3 6635 6515 3 1238 248 375 14 29 chr9 85706928 85707093 -38369079 + MIRc SINE MIR 13 172 -36 3 1238 492 18 0 0 chr9 85707129 85707186 -38368986 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1238 741 355 35 11 chr9 85707233 85707515 -38368657 - B4A SINE B4 0 292 4 3 1238 861 205 11 26 chr9 85707526 85707716 -38368456 - B2_Mm2 SINE B2 -8 187 1 3 1238 456 330 83 21 chr9 85707880 85708168 -38368004 - Charlie7 DNA MER1_type -1894 718 413 3 1238 301 300 88 61 chr9 85708284 85708465 -38367707 - LTR16E1 LTR ERVL -99 439 254 3 1238 400 221 23 11 chr9 85709704 85709791 -38366381 - PB1D10 SINE Alu -1 116 29 3 1238 313 238 0 87 chr9 85710510 85710602 -38365570 + RSINE1 SINE B4 82 165 0 3 1238 764 176 8 8 chr9 85710634 85710766 -38365406 - B1_Mus1 SINE Alu -3 145 14 3 1238 304 193 130 43 chr9 85711060 85711152 -38365020 + PB1D7 SINE Alu 21 120 0 3 1238 336 359 96 6 chr9 85711169 85711326 -38364846 + MER88 LTR ERVL 20 190 -274 3 1238 471 303 160 28 chr9 85712210 85712553 -38363619 - L1M4b LINE L1 -378 6660 6258 3 1238 6520 70 14 6 chr9 85712553 85713367 -38362805 - L1_Mus3 LINE L1 -6 6632 5813 3 1238 471 303 160 28 chr9 85713367 85713447 -38362725 - L1M4b LINE L1 -781 6257 6181 3 1238 315 288 99 43 chr9 85713470 85713702 -38362470 - L1M4b LINE L1 -960 6046 5802 3 1238 185 180 0 20 chr9 85713702 85713753 -38362419 + CT-rich Low_complexity Low_complexity 2 51 0 3 1238 529 289 51 43 chr9 85713908 85714143 -38362029 + L1M4 LINE L1 4013 4249 -1897 3 1238 1497 296 87 46 chr9 85714244 85715555 -38360617 - L1M4b LINE L1 -2103 4903 3563 3 1238 788 186 17 13 chr9 85715555 85715743 -38360429 + B3A SINE B2 1 193 -23 3 1238 345 206 147 0 chr9 85715764 85715866 -38360306 - L1M4b LINE L1 -4211 3123 3007 3 1238 701 240 19 68 chr9 85716345 85716551 -38359621 - B3A SINE B2 0 198 3 3 1238 555 286 72 24 chr9 85716638 85716846 -38359326 - ID_B1 SINE B4 -5 219 2 3 1238 315 164 0 0 chr9 85717143 85717204 -38358968 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1238 604 306 141 18 chr9 85717204 85717537 -38358635 + MTEb LTR MaLR 2 375 -4 3 1238 2187 299 90 42 chr9 85717541 85718364 -38357808 + MTEb-int LTR MaLR 1 862 -718 3 1238 1170 309 72 63 chr9 85718367 85719266 -38356906 - L1M2 LINE L1 -2696 3184 2295 3 1238 855 231 48 43 chr9 85719591 85719799 -38356373 - B3 SINE B2 -7 209 1 3 154 7491 89 12 10 chr9 85720664 85721996 -38354176 - Lx3_Mus LINE L1 -783 6226 4902 3 1239 12821 78 15 4 chr9 85721993 85723798 -38352374 + L1_Mur1 LINE L1 2789 4612 -1274 3 1239 1514 253 76 27 chr9 85723819 85724303 -38351869 + Lx8 LINE L1 6548 7055 -418 3 1239 484 193 4 30 chr9 85724759 85724870 -38351302 + PB1 SINE Alu 26 221 -90 3 1239 378 0 0 0 chr9 85724953 85724995 -38351177 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1239 273 361 42 55 chr9 85725680 85725897 -38350275 - L1MC LINE L1 -2140 5742 5529 3 1239 257 250 59 12 chr9 85725978 85726063 -38350109 - L1MC LINE L1 -2470 5412 5324 3 1239 1053 89 11 35 chr9 85726249 85726423 -38349749 + B2_Mm2 SINE B2 1 170 -25 3 1239 1112 267 60 0 chr9 85726543 85726809 -38349363 - Lx8 LINE L1 -144 7329 7048 3 1239 324 0 0 0 chr9 85727124 85727160 -38349012 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1239 479 307 0 7 chr9 85728304 85728458 -38347714 + RSINE1 SINE B4 3 155 -10 3 1239 189 107 0 0 chr9 85728823 85728851 -38347321 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3 1239 184 170 38 0 chr9 85728926 85728979 -38347193 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1239 1542 177 202 3 chr9 85729111 85729462 -38346710 - Lx2B LINE L1 0 7000 6580 3 1239 611 223 83 33 chr9 85729772 85729953 -38346219 - MER20B DNA MER1_type -582 201 12 3 1239 519 301 15 0 chr9 85730224 85730360 -38345812 - ID_B1 SINE B4 -9 215 78 3 1239 198 0 0 0 chr9 85731009 85731031 -38345141 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 3 1239 973 228 11 0 chr9 85731053 85731242 -38344930 - B3 SINE B2 -25 191 1 3 1239 351 0 0 0 chr9 85731575 85731614 -38344558 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 3 1239 590 186 97 0 chr9 85732053 85732177 -38343995 + B1F2 SINE Alu 1 136 -13 3 1239 381 303 89 69 chr9 85732307 85732509 -38343663 + B4 SINE B4 6 211 -81 3 1239 366 61 0 0 chr9 85732587 85732636 -38343536 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1239 29 70 0 0 chr9 85732654 85732711 -38343461 + AT_rich Low_complexity Low_complexity 1 57 0 3 1239 1112 266 127 18 chr9 85732821 85733161 -38343011 + MTE2b LTR MaLR 1 377 -2 3 1239 1301 281 91 21 chr9 85733161 85733583 -38342589 + MTE2b-int LTR MaLR 18 469 -1111 3 1239 496 294 43 22 chr9 85733585 85733769 -38342403 + MTE2b-int LTR MaLR 1392 1579 -1 3 1239 474 244 52 22 chr9 85733770 85733904 -38342268 + MTE2b LTR MaLR 1 138 -241 3 1239 284 292 107 16 chr9 85734300 85734390 -38341782 + RMER30 DNA MER1_type 34 135 -67 3 1239 189 0 0 0 chr9 85734390 85734411 -38341761 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1239 284 292 107 16 chr9 85734411 85734442 -38341730 + RMER30 DNA MER1_type 136 166 -36 3 1239 210 71 0 0 chr9 85734725 85734753 -38341419 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1239 216 0 0 0 chr9 85734843 85734867 -38341305 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1239 250 75 57 0 chr9 85739473 85739526 -38336646 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 3 1239 31 26 0 0 chr9 85743065 85743103 -38333069 + AT_rich Low_complexity Low_complexity 1 38 0 3 1239 180 134 43 29 chr9 85744211 85744280 -38331892 + (TATAA)n Simple_repeat Simple_repeat 2 71 0 3 1239 181 274 0 19 chr9 85745058 85745110 -38331062 - L2a LINE L2 -8 3418 3368 3 1239 586 309 65 14 chr9 85745710 85745989 -38330183 - LTR52-int LTR ERVL 0 3556 3264 3 1239 762 351 39 45 chr9 85746157 85746620 -38329552 - LTR52-int LTR ERVL -560 2996 2380 3 1239 400 73 0 58 chr9 85746957 85747044 -38329128 + (GTGTG)n Simple_repeat Simple_repeat 3 84 0 3 1239 647 310 119 12 chr9 85747189 85747509 -38328663 - LTR52-int LTR ERVL -1913 1643 1290 3 1239 399 113 0 0 chr9 85747643 85747705 -38328467 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1239 369 62 0 0 chr9 85747717 85747765 -38328407 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1239 334 295 23 54 chr9 85748289 85748418 -38327754 - MIR SINE MIR -134 128 4 3 1239 298 258 82 45 chr9 85748580 85748714 -38327458 - RSINE1 SINE B4 -4 161 23 3 1239 405 0 0 0 chr9 85748820 85748865 -38327307 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1239 291 54 0 0 chr9 85748865 85748901 -38327271 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1239 382 257 66 9 chr9 85748919 85749025 -38327147 - B3A SINE B2 -84 114 3 3 1239 279 0 0 0 chr9 85749030 85749061 -38327111 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1239 314 336 29 72 chr9 85749151 85749289 -38326883 + B4A SINE B4 13 144 -148 3 1239 183 129 0 0 chr9 85750692 85750723 -38325449 + (G)n Simple_repeat Simple_repeat 1 31 0 3 1239 882 72 160 0 chr9 85750800 85750925 -38325247 - B1_Mm SINE Alu -2 145 1 4 1239 315 0 0 0 chr9 85750928 85750963 -38325209 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1239 278 257 162 0 chr9 85751904 85752009 -38324163 - MTE2a LTR MaLR -18 361 240 4 1239 210 37 0 0 chr9 85752022 85752049 -38324123 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 1239 215 31 31 0 chr9 85752066 85752098 -38324074 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1239 393 22 0 0 chr9 85752098 85752143 -38324029 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1239 407 346 0 0 chr9 85752144 85752271 -38323901 - B3A SINE B2 -41 157 31 4 1239 408 118 0 0 chr9 85753376 85753444 -38322728 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1239 394 322 122 6 chr9 85753446 85753618 -38322554 - B4A SINE B4 -18 274 83 4 1239 379 298 17 69 chr9 85753723 85753896 -38322276 - B4A SINE B4 -127 165 2 4 1239 225 235 14 29 chr9 85754007 85754077 -38322095 - MER5A1 DNA MER1_type -37 129 61 4 1239 686 269 101 5 chr9 85754212 85754421 -38321751 + B4A SINE B4 48 276 -16 4 1239 827 117 13 25 chr9 85755681 85755839 -38320333 - Lx2 LINE L1 -11 6986 6831 4 1239 202 133 67 0 chr9 85755839 85755884 -38320288 + T-rich Low_complexity Low_complexity 2 49 0 4 1239 683 274 80 8 chr9 85756483 85756733 -38319439 + B4A SINE B4 7 274 -18 4 1239 459 0 0 0 chr9 85756758 85756809 -38319363 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1239 977 217 20 5 chr9 85758171 85758375 -38317797 + B3 SINE B2 1 207 -9 4 1239 24 32 0 0 chr9 85758375 85758406 -38317766 + AT_rich Low_complexity Low_complexity 1 31 0 4 1239 635 256 81 31 chr9 85759426 85759748 -38316424 + RLTR15 LTR ERVK 1 338 -21 4 1239 653 231 0 52 chr9 85759901 85760056 -38316116 + B1_Mus1 SINE Alu 2 148 0 4 1239 261 0 0 0 chr9 85760079 85760108 -38316064 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1239 308 168 75 15 chr9 85760467 85760600 -38315572 + (TA)n Simple_repeat Simple_repeat 2 142 0 4 1239 3663 41 11 0 chr9 85761553 85761996 -38314176 - L1Md_F3 LINE L1 -270 6314 5867 4 1239 2079 52 0 39 chr9 85761996 85762278 -38313894 + L1Md_F3 LINE L1 6313 6583 -1 4 1239 226 269 90 0 chr9 85763618 85763685 -38312487 - B1F SINE Alu -67 82 10 4 1239 25 0 0 0 chr9 85763698 85763723 -38312449 + AT_rich Low_complexity Low_complexity 1 25 0 4 1239 435 311 86 21 chr9 85763982 85764215 -38311957 - Lx8 LINE L1 -236 7237 6990 4 1239 565 300 108 7 chr9 85764285 85764564 -38311608 + MER63D DNA AcHobo 4 310 -751 4 1239 488 275 78 0 chr9 85764629 85764771 -38311401 + MER58A DNA MER1_type 45 197 -27 4 1239 281 292 197 0 chr9 85764823 85764970 -38311202 + MER63D DNA AcHobo 419 594 -467 4 1239 23 54 0 0 chr9 85764995 85765032 -38311140 + AT_rich Low_complexity Low_complexity 1 37 0 4 1239 618 308 50 58 chr9 85765101 85765463 -38310709 + L1M3 LINE L1 5439 5797 -374 4 1239 1064 278 52 15 chr9 85765757 85766159 -38310013 + L1MB2 LINE L1 5755 6171 0 4 1239 442 310 43 0 chr9 85766202 85766389 -38309783 + MER63D DNA AcHobo 816 1010 -51 4 1239 733 306 52 59 chr9 85766962 85767233 -38308939 + B4 SINE B4 2 270 -22 4 1239 737 103 17 0 chr9 85767234 85767350 -38308822 + (CACG)n Simple_repeat Simple_repeat 2 119 0 4 1239 471 259 110 14 chr9 85767360 85767505 -38308667 - B3A SINE B2 -39 159 1 4 1239 228 231 0 37 chr9 85767644 85767698 -38308474 - Charlie9 DNA MER1_type -2705 52 1 4 1239 246 349 0 12 chr9 85767882 85767966 -38308206 - ID2 SINE ID 0 83 1 4 1239 543 238 95 0 chr9 85768374 85768521 -38307651 + RSINE1 SINE B4 3 163 -2 4 1239 188 306 0 0 chr9 85768702 85768751 -38307421 - L2c LINE L2 -235 3152 3104 4 1239 3820 166 48 16 chr9 85769103 85769784 -38306388 - Lx5 LINE L1 -3 7047 6345 4 1239 993 153 67 29 chr9 85769888 85770096 -38306076 - URR1B DNA MER1_type 0 225 10 4 1239 207 0 0 0 chr9 85770272 85770295 -38305877 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1239 1302 243 29 24 chr9 85772709 85773050 -38303122 + ORR1E LTR MaLR 5 347 -12 4 1239 21 0 0 0 chr9 85773166 85773187 -38302985 + AT_rich Low_complexity Low_complexity 1 21 0 4 1239 223 237 203 0 chr9 85773958 85774017 -38302155 + B4A SINE B4 2 72 -220 4 1239 1302 215 26 143 chr9 85774110 85774642 -38301530 - RLTR12B LTR ERVK -12 516 47 4 1239 228 293 0 0 chr9 85774710 85774768 -38301404 + RSINE1 SINE B4 108 165 0 4 1239 228 67 0 0 chr9 85774787 85774817 -38301355 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1239 710 43 11 0 chr9 85774823 85774917 -38301255 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1239 320 248 38 83 chr9 85775018 85775150 -38301022 + MIR SINE MIR 23 148 -114 4 1239 14146 85 17 10 chr9 85775519 85778421 -38297751 + L1VL2 LINE L1 67 2988 -627 4 1239 950 119 0 7 chr9 85778677 85778821 -38297351 - Lx2 LINE L1 -977 6020 5878 4 1239 4635 125 36 16 chr9 85778818 85779564 -38296608 + Lx2 LINE L1 6013 6773 -224 4 1239 234 0 0 0 chr9 85779567 85779593 -38296579 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1239 267 93 0 0 chr9 85779614 85779657 -38296515 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4 1239 333 0 0 0 chr9 85780877 85780914 -38295258 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1239 239 0 0 31 chr9 85781005 85781037 -38295135 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 4 1239 240 364 13 45 chr9 85781822 85781979 -38294193 - MIRc SINE MIR -96 166 19 4 1239 532 206 92 103 chr9 85782025 85782220 -38293952 - B3A SINE B2 -1 197 5 4 1239 4995 42 18 0 chr9 85782444 85783009 -38293163 + L1_Mus1 LINE L1 5993 6567 0 4 1239 2430 179 34 5 chr9 85783840 85784249 -38291923 - MTC LTR MaLR 0 421 1 4 1239 2316 203 34 0 chr9 85784701 85785110 -38291062 - Lx5 LINE L1 -2 7048 6626 4 1239 23 33 0 0 chr9 85785395 85785425 -38290747 + AT_rich Low_complexity Low_complexity 1 30 0 4 1239 516 106 0 0 chr9 85786170 85786264 -38289908 + (CA)n Simple_repeat Simple_repeat 2 95 0 4 1239 527 263 90 0 chr9 85786300 85786433 -38289739 + B1F1 SINE Alu 1 145 -4 4 1239 857 271 10 10 chr9 85786494 85786695 -38289477 + B3 SINE B2 1 201 -15 4 1239 352 326 56 61 chr9 85786859 85787055 -38289117 - MLT1J2 LTR MaLR -5 443 249 4 1239 213 284 10 50 chr9 85788004 85788104 -38288068 + CT-rich Low_complexity Low_complexity 4 99 0 4 1239 1099 250 170 9 chr9 85788243 85788566 -38287606 + MTE2b LTR MaLR 1 375 -4 4 1239 725 98 9 0 chr9 85789906 85790018 -38286154 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 4 1239 189 74 0 0 chr9 85790031 85790058 -38286114 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 4 1239 225 128 0 0 chr9 85790073 85790120 -38286052 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1239 599 329 65 69 chr9 85790219 85790653 -38285519 - MT2A LTR ERVL -101 432 1 4 1239 185 94 0 30 chr9 85791053 85791086 -38285086 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 4 1239 284 70 23 0 chr9 85791194 85791237 -38284935 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1239 255 61 0 0 chr9 85791473 85791506 -38284666 + (CAAT)n Simple_repeat Simple_repeat 3 35 0 4 1239 36293 34 0 0 chr9 85792480 85798137 -38278035 + L1Md_T LINE L1 1 5589 -297 4 1239 9543 7 0 0 chr9 85798137 85799133 -38277039 + L1Md_T LINE L1 5590 6585 0 4 1239 213 39 0 0 chr9 85799160 85799186 -38276986 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1239 339 258 10 51 chr9 85799395 85799493 -38276679 - L2a LINE L2 -1 3425 3332 4 1239 1349 294 57 32 chr9 85799705 85800422 -38275750 - L1MB3 LINE L1 -9 6174 5440 4 1239 378 345 97 70 chr9 85800508 85800953 -38275219 + RMER5 LTR ERV1 67 523 -11 4 1239 381 214 0 51 chr9 85801482 85801600 -38274572 - Lx9 LINE L1 -1 7643 7532 4 1239 774 60 0 0 chr9 85801609 85801709 -38274463 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 1239 293 299 126 17 chr9 85802007 85802126 -38274046 - MER3 DNA MER1_type -77 132 1 4 1239 601 229 21 14 chr9 85802189 85802331 -38273841 - B1_Mur2 SINE Alu -2 147 5 4 1239 231 260 91 0 chr9 85802646 85802723 -38273449 - RMER5 LTR ERV1 -234 300 217 4 1239 1775 151 29 7 chr9 85802777 85803084 -38273088 + ORR1A4 LTR MaLR 8 321 -8 4 1239 336 24 0 0 chr9 85803176 85803217 -38272955 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1239 378 306 87 22 chr9 85804219 85804403 -38271769 - MIRb SINE MIR -46 222 27 4 1239 7116 100 21 27 chr9 85805474 85806516 -38269656 - Lx3_Mus LINE L1 -4 7005 5970 4 1239 1607 74 0 9 chr9 85806516 85806734 -38269438 + L1_Mur1 LINE L1 4211 4426 -1460 4 1239 1427 102 0 5 chr9 85806824 85807012 -38269160 + B2_Mm2 SINE B2 2 188 -7 4 1239 659 299 0 61 chr9 85807020 85807184 -38268988 + RSINE1 SINE B4 12 165 0 4 1239 1879 333 92 39 chr9 85807322 85807893 -38268279 + Lx9 LINE L1 5587 6173 -1300 4 1239 873 54 0 0 chr9 85807893 85808004 -38268168 + (TC)n Simple_repeat Simple_repeat 2 112 0 4 1239 2612 304 102 21 chr9 85808004 85808715 -38267457 + Lx9 LINE L1 6174 7073 -571 4 1239 423 0 0 0 chr9 85808715 85808762 -38267410 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1239 2612 304 102 21 chr9 85808762 85809079 -38267093 + Lx9 LINE L1 7074 7434 -210 4 1239 709 216 8 7 chr9 85809142 85809284 -38266888 + RMER1C Other Other 435 651 -691 4 1239 3494 28 25 10 chr9 85810209 85810614 -38265558 - IAPLTR2a LTR ERVK 0 411 1 4 1239 6482 67 11 6 chr9 85810616 85811441 -38264731 - IAPEz-int LTR ERVK -2 6479 5651 4 1239 2700 67 0 3 chr9 85811434 85811777 -38264395 - IAPEz-int LTR ERVK -4781 1700 1359 4 1239 3668 57 1 16 chr9 85811777 85812355 -38263817 - IAPEz-int LTR ERVK -5819 662 168 4 1239 228 321 0 0 chr9 85812355 85812408 -38263764 - RLTR27 LTR ERVK -34 275 223 4 1239 1162 114 16 32 chr9 85812408 85812598 -38263574 - IAPEz-int LTR ERVK -6286 195 9 4 1239 3400 28 40 0 chr9 85812599 85812994 -38263178 - IAPLTR2a LTR ERVK 0 411 1 4 1239 345 174 0 0 chr9 85813051 85813120 -38263052 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1239 359 367 65 29 chr9 85813286 85813564 -38262608 + B4A SINE B4 1 288 -4 4 1239 448 379 19 7 chr9 85814003 85814157 -38262015 + RSINE1 SINE B4 8 163 -2 4 1239 453 19 0 0 chr9 85815313 85815367 -38260805 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1239 243 211 35 0 chr9 85815615 85815672 -38260500 - MLT2B4 LTR ERVL 0 556 498 5 1239 3612 25 5 0 chr9 85815985 85816379 -38259793 + MTA_Mm LTR MaLR 1 396 0 5 1239 962 118 11 17 chr9 85816648 85816829 -38259343 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1239 2115 165 28 3 chr9 85816873 85817231 -38258941 - Lx3C LINE L1 -9 6967 6601 5 1239 2136 96 15 60 chr9 85817232 85817563 -38258609 + Lx3C LINE L1 6269 6584 -392 5 1239 1319 238 96 23 chr9 85817647 85817991 -38258181 + ORR1D2 LTR MaLR 1 369 -1 5 1239 207 114 0 0 chr9 85818806 85818841 -38257331 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1239 349 61 0 0 chr9 85819304 85819353 -38256819 + B1_Mus2 SINE Alu 99 147 0 5 1239 336 153 0 0 chr9 85819353 85819438 -38256734 + A-rich Low_complexity Low_complexity 1 85 0 5 1239 423 0 0 0 chr9 85819704 85819751 -38256421 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1239 459 0 0 0 chr9 85820689 85820740 -38255432 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1239 628 246 42 7 chr9 85822638 85822781 -38253391 - MTC LTR MaLR -6 415 268 5 1239 1230 184 98 8 chr9 85822856 85823102 -38253070 - MTC LTR MaLR -153 268 1 5 1239 371 294 0 0 chr9 85823108 85823193 -38252979 + MLT1A0 LTR MaLR 203 287 -78 5 1239 314 300 41 53 chr9 85824548 85824717 -38251455 + MIRb SINE MIR 101 267 -1 5 1239 203 215 15 0 chr9 85825244 85825309 -38250863 + GA-rich Low_complexity Low_complexity 5 70 0 5 1239 21 0 0 0 chr9 85826109 85826130 -38250042 + AT_rich Low_complexity Low_complexity 1 21 0 5 1239 510 355 123 31 chr9 85827401 85827822 -38248350 + MLT1C LTR MaLR 8 467 0 5 1239 246 32 0 0 chr9 85828013 85828044 -38248128 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1239 768 22 0 0 chr9 85828957 85829047 -38247125 + (TC)n Simple_repeat Simple_repeat 2 91 0 5 1239 315 0 0 0 chr9 85829047 85829081 -38247091 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1239 455 315 247 0 chr9 85829281 85829532 -38246640 + MLT1L LTR MaLR 184 496 -114 5 1239 243 348 58 29 chr9 85829848 85829987 -38246185 - MIRc SINE MIR -125 143 1 5 1239 207 0 0 0 chr9 85830121 85830144 -38246028 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 5 1239 198 91 0 0 chr9 85830330 85830363 -38245809 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1239 186 174 0 0 chr9 85830537 85830583 -38245589 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 5 1239 509 317 6 36 chr9 85831306 85831473 -38244699 + RSINE1 SINE B4 1 162 -3 5 1239 514 354 70 10 chr9 85831503 85831703 -38244469 + B4A SINE B4 81 292 0 5 1239 180 0 0 0 chr9 85831703 85831723 -38244449 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1239 252 0 0 0 chr9 85831747 85831775 -38244397 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1239 23 54 0 0 chr9 85832334 85832371 -38243801 + AT_rich Low_complexity Low_complexity 1 37 0 5 1239 319 157 0 28 chr9 85832392 85832464 -38243708 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 5 1239 324 286 65 28 chr9 85832652 85832760 -38243412 - PB1D9 SINE Alu -7 113 2 5 1239 685 264 86 63 chr9 85832954 85833305 -38242867 - RLTR10D LTR ERVK 0 359 1 5 1239 1443 208 20 25 chr9 85833305 85833660 -38242512 - IAP-d-int LTR ERVK 0 6542 6190 5 1239 7856 288 17 16 chr9 85833655 85836565 -38239607 - IAP-d-int LTR ERVK -459 6083 3170 5 1239 466 220 17 0 chr9 85836590 85836708 -38239464 - IAP-d-int LTR ERVK -6401 141 22 5 1239 458 263 88 99 chr9 85836753 85837116 -38239056 - RLTR10D LTR ERVK 0 359 1 5 1239 244 304 9 18 chr9 85837237 85837351 -38238821 - Lx8 LINE L1 -1 7472 7360 5 1239 189 0 0 0 chr9 85837377 85837398 -38238774 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1239 406 235 49 0 chr9 85837399 85837480 -38238692 - B3A SINE B2 -44 154 70 5 1239 815 278 21 17 chr9 85837531 85837765 -38238407 - Lx8 LINE L1 -144 7329 7095 5 1239 1341 138 80 8 chr9 85838645 85838894 -38237278 - L1_Mus4 LINE L1 0 6636 6370 5 1239 692 277 15 15 chr9 85838913 85839118 -38237054 + B3 SINE B2 1 205 -11 5 1239 361 360 174 12 chr9 85839244 85839491 -38236681 + B4 SINE B4 4 290 -2 5 1239 410 238 19 29 chr9 85839861 85839965 -38236207 - MLT1A1 LTR MaLR -15 393 291 5 1239 215 225 0 0 chr9 85840288 85840328 -38235844 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1239 406 263 55 94 chr9 85841962 85842332 -38233840 + MLT2D LTR ERVL 111 558 -2 5 1239 248 283 18 62 chr9 85844033 85844146 -38232026 + L2a LINE L2 3314 3421 -5 5 1239 782 277 14 14 chr9 85844414 85844630 -38231542 + B3 SINE B2 1 216 0 5 1239 22 35 0 0 chr9 85844826 85844855 -38231317 + AT_rich Low_complexity Low_complexity 1 29 0 5 1239 386 330 212 17 chr9 85844987 85845227 -38230945 + B4A SINE B4 1 287 -5 5 1239 1097 260 99 38 chr9 85845530 85845860 -38230312 - ORR1E LTR MaLR -1 373 1 5 1239 2159 207 93 56 chr9 85846270 85846859 -38229313 - RMER19C LTR ERVK 0 611 1 5 1239 857 274 6 0 chr9 85846879 85847058 -38229114 - B3 SINE B2 -35 181 2 5 1239 212 281 0 66 chr9 85847379 85847440 -38228732 - ID_B1 SINE B4 -79 145 89 5 1239 785 280 136 36 chr9 85847537 85848048 -38228124 - Lx8 LINE L1 -615 7081 6534 5 1239 1831 227 25 68 chr9 85848152 85848667 -38227505 - RLTR16 LTR ERVK -12 493 1 5 1239 747 263 57 111 chr9 85848675 85849043 -38227129 - Lx8 LINE L1 -967 6506 6159 5 1239 953 298 88 5 chr9 85849056 85849095 -38227077 + Lx7 LINE L1 5425 5465 -415 5 1239 3283 43 5 0 chr9 85849095 85849487 -38226685 - MTA_Mm LTR MaLR -2 394 1 5 1239 990 271 74 22 chr9 85849487 85850076 -38226096 + Lx7 LINE L1 5463 6098 -1598 5 1239 284 282 45 8 chr9 85850695 85850827 -38225345 - L1M3 LINE L1 -2205 3935 3799 5 1239 299 274 133 10 chr9 85850830 85851033 -38225139 - L1M5 LINE L1 -2437 3709 3482 5 1239 341 308 164 28 chr9 85851365 85851859 -38224313 - L1MC4a LINE L1 -1965 5917 5357 5 1240 240 133 50 0 chr9 85852309 85852369 -38223803 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1240 25 31 0 0 chr9 85852469 85852501 -38223671 + AT_rich Low_complexity Low_complexity 1 32 0 5 1240 351 0 0 0 chr9 85853720 85853759 -38222413 + (CAA)n Simple_repeat Simple_repeat 3 41 0 5 1240 184 239 0 0 chr9 85854679 85854725 -38221447 - L3 LINE CR1 -4383 106 61 5 1240 274 175 51 10 chr9 85854725 85854823 -38221349 + (TA)n Simple_repeat Simple_repeat 1 102 0 5 1240 340 347 82 25 chr9 85855304 85855585 -38220587 + L3 LINE CR1 2211 2507 -1982 5 1240 265 306 143 25 chr9 85855955 85856116 -38220056 + LTR79 LTR ERVL 19 198 -329 5 1240 703 212 153 0 chr9 85856639 85856809 -38219363 - ORR1D2 LTR MaLR -6 364 169 5 1240 260 132 71 24 chr9 85856809 85856894 -38219278 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 5 1240 480 18 0 0 chr9 85856905 85856962 -38219210 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1240 587 269 0 22 chr9 85856973 85857110 -38219062 - ORR1D2 LTR MaLR -220 139 6 5 1240 503 268 0 16 chr9 85858064 85858189 -38217983 - RSINE1 SINE B4 -38 127 5 5 1240 1599 47 0 0 chr9 85858492 85858682 -38217490 + B2_Mm1t SINE B2 2 191 -2 5 1240 388 307 23 8 chr9 85858683 85858811 -38217361 - MER5A DNA MER1_type -55 134 5 5 1240 311 145 14 0 chr9 85859280 85859349 -38216823 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1240 4101 6 0 0 chr9 85860237 85860715 -38215457 - L1Md_A LINE L1 -182 5701 5224 5 1240 7863 3 0 0 chr9 85860715 85861582 -38214590 + L1Md_A LINE L1 5716 6582 0 5 1240 594 167 0 0 chr9 85861966 85862074 -38214098 + CT-rich Low_complexity Low_complexity 3 110 0 5 1240 540 308 38 6 chr9 85862275 85862432 -38213740 - MER45A DNA Tip100 -16 162 1 5 1240 240 333 124 78 chr9 85862436 85862719 -38213453 - MLT1M LTR MaLR -376 296 1 5 1240 771 11 0 0 chr9 85863320 85863408 -38212764 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 1240 225 352 0 0 chr9 85863432 85863503 -38212669 + ID4_ SINE ID 2 72 -11 5 1240 261 0 0 0 chr9 85863508 85863537 -38212635 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1240 460 284 0 0 chr9 85864844 85864953 -38211219 - PB1D10 SINE Alu -8 109 1 5 1240 227 311 81 62 chr9 85866115 85866276 -38209896 + BLACKJACK DNA AcHobo 6 169 -2775 5 1240 6558 23 13 0 chr9 85866327 85867098 -38209074 + L1Md_F3 LINE L1 5804 6584 0 5 1240 275 294 37 128 chr9 85867249 85867436 -38208736 + RLTR33 LTR ERVK 424 593 -85 5 1240 405 296 73 7 chr9 85868287 85868423 -38207749 - BLACKJACK DNA AcHobo -2654 290 146 5 1240 569 293 73 42 chr9 85868520 85868780 -38207392 + BLACKJACK DNA AcHobo 832 1099 -1845 5 1240 1220 255 46 16 chr9 85869148 85869579 -38206593 - Lx7 LINE L1 -1792 5904 5434 5 1240 570 294 85 97 chr9 85869649 85870493 -38205679 + BLACKJACK DNA AcHobo 2048 2881 -63 5 1240 330 294 76 38 chr9 85871845 85871976 -38204196 - MLT1L LTR MaLR -338 272 137 5 1240 1207 206 49 122 chr9 85872068 85872477 -38203695 - MTE2a LTR MaLR 0 379 1 5 1240 21 36 0 0 chr9 85872891 85872919 -38203253 + AT_rich Low_complexity Low_complexity 1 28 0 5 1240 741 194 7 0 chr9 85873126 85873265 -38202907 + B1_Mur1 SINE Alu 4 143 -6 5 1240 754 246 79 20 chr9 85873295 85873498 -38202674 - B3 SINE B2 -1 215 1 5 1240 374 350 0 0 chr9 85873898 85874001 -38202171 + ID_B1 SINE B4 74 176 -48 5 1240 402 323 0 0 chr9 85873910 85874003 -38202169 + PB1D10 SINE Alu 5 97 -20 5 1240 1415 194 93 20 chr9 85875743 85876062 -38200110 - ORR1B1 LTR MaLR -28 331 1 5 1240 219 36 0 0 chr9 85876476 85876504 -38199668 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1240 2046 219 14 26 chr9 85876613 85876800 -38199372 - MTC LTR MaLR 0 421 237 5 1240 7103 17 12 4 chr9 85876800 85877615 -38198557 + RLTR13B2 LTR ERVK 1 822 0 5 1240 2046 219 14 26 chr9 85877615 85877853 -38198319 - MTC LTR MaLR -185 236 1 5 1240 384 298 57 0 chr9 85878194 85878335 -38197837 - L1M5 LINE L1 -2902 3244 3096 5 1240 180 0 0 0 chr9 85879084 85879104 -38197068 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1240 261 0 0 0 chr9 85879756 85879785 -38196387 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1240 4879 115 48 1 chr9 85880295 85880426 -38195746 + L1_Mur2 LINE L1 4062 4193 -1684 5 1240 453 81 0 0 chr9 85880426 85880488 -38195684 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1240 4879 115 48 1 chr9 85880488 85880891 -38195281 + L1_Mur2 LINE L1 4194 4622 -1255 5 1240 207 0 0 0 chr9 85880891 85880914 -38195258 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1240 4879 115 48 1 chr9 85880914 85881188 -38194984 + L1_Mur2 LINE L1 4623 4907 -970 5 1240 197 284 202 11 chr9 85881204 85881293 -38194879 - L2a LINE L2 -44 3382 3277 6 1240 189 0 0 0 chr9 85881370 85881391 -38194781 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 6 1240 339 25 0 0 chr9 85881418 85881458 -38194714 + (ATTG)n Simple_repeat Simple_repeat 1 40 0 6 1240 548 202 114 15 chr9 85881460 85881591 -38194581 - B1F SINE Alu -1 148 5 6 1240 527 351 87 86 chr9 85881723 85882156 -38194016 - L2a LINE L2 -427 2992 2560 6 1240 1173 68 0 0 chr9 85882156 85882302 -38193870 + B1_Mus2 SINE Alu 2 147 0 6 1240 527 351 87 86 chr9 85882302 85882923 -38193249 - L2a LINE L2 -860 2559 1931 6 1240 1198 47 0 0 chr9 85882923 85883071 -38193101 + B1_Mus1 SINE Alu 1 148 0 6 1240 527 351 87 86 chr9 85883071 85883223 -38192949 - L2a LINE L2 -1489 1930 1785 6 1240 833 198 56 25 chr9 85883482 85883679 -38192493 + B3 SINE B2 2 204 -12 6 1240 33 25 0 0 chr9 85883682 85883722 -38192450 + AT_rich Low_complexity Low_complexity 1 40 0 6 1240 271 292 84 50 chr9 85884007 85884126 -38192046 - MER5B DNA MER1_type -54 124 2 6 1240 210 182 23 0 chr9 85884276 85884320 -38191852 + CT-rich Low_complexity Low_complexity 1 45 0 6 1240 3167 147 47 112 chr9 85884515 85884885 -38191287 + RMER6C LTR ERVK 1 336 -354 6 1240 432 0 0 0 chr9 85884885 85884933 -38191239 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1240 3167 147 47 112 chr9 85884933 85885300 -38190872 + RMER6C LTR ERVK 337 690 0 6 1240 727 297 139 19 chr9 85885779 85886048 -38190124 - MLT1B LTR MaLR 0 390 85 6 1240 1525 277 89 14 chr9 85886048 85886543 -38189629 - MT2A LTR ERVL 0 533 2 6 1240 24 53 0 0 chr9 85886763 85886801 -38189371 + AT_rich Low_complexity Low_complexity 1 38 0 6 1240 876 306 83 31 chr9 85886806 85887446 -38188726 - L1MA4 LINE L1 -374 5926 5254 6 1240 180 0 0 0 chr9 85887634 85887654 -38188518 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1240 951 242 5 19 chr9 85888284 85888495 -38187677 - B3 SINE B2 -7 209 2 6 1240 1261 35 6 23 chr9 85889545 85889721 -38186451 - L1Md_F3 LINE L1 0 6584 6412 6 1240 533 363 98 40 chr9 85890277 85890624 -38185548 + MLT2D LTR ERVL 1 367 -47 6 1240 315 0 0 0 chr9 85890693 85890728 -38185444 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1240 269 286 64 7 chr9 85892620 85892761 -38183411 + Lx9 LINE L1 7354 7502 -142 6 1240 279 145 0 42 chr9 85893759 85893790 -38182382 + polypurine Low_complexity Low_complexity 3 33 0 6 1240 1053 150 0 0 chr9 85893790 85893970 -38182202 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1240 279 145 0 42 chr9 85893970 85894010 -38182162 + polypurine Low_complexity Low_complexity 34 71 0 6 1240 330 308 22 36 chr9 85894217 85894355 -38181817 + L1MDb LINE L1 1189 1324 -5085 6 1240 1071 159 113 10 chr9 85894642 85894845 -38181327 - URR1A DNA MER1_type -2 224 1 6 1240 267 54 0 0 chr9 85896123 85896160 -38180012 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 6 1240 213 77 57 19 chr9 85896354 85896407 -38179765 + A-rich Low_complexity Low_complexity 2 56 0 6 1240 180 0 0 0 chr9 85897114 85897134 -38179038 + (ACTTG)n Simple_repeat Simple_repeat 3 22 0 6 1240 184 333 127 45 chr9 85897134 85897240 -38178932 + L2b LINE L2 3256 3370 -5 6 1240 456 379 66 25 chr9 85897345 85897740 -38178432 + L1M5 LINE L1 4474 4884 -1262 6 1240 1194 43 0 0 chr9 85897916 85898057 -38178115 + B1_Mm SINE Alu 1 141 -6 6 1240 186 43 0 0 chr9 85898063 85898086 -38178086 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1240 266 332 136 4 chr9 85898276 85898527 -38177645 + L1MC LINE L1 5315 5598 -2284 6 1240 330 138 0 0 chr9 85898662 85898720 -38177452 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1240 189 0 0 0 chr9 85898773 85898794 -38177378 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1240 609 14 0 0 chr9 85898794 85898863 -38177309 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1240 5028 156 32 5 chr9 85899050 85899882 -38176290 - Lx5 LINE L1 -2 7048 6194 6 1240 956 180 120 0 chr9 85900474 85900674 -38175498 - URR1B DNA MER1_type -1 224 1 6 1240 2306 156 57 84 chr9 85902152 85902663 -38173509 - RMER20B LTR ERVK -130 497 1 6 1240 909 90 0 0 chr9 85902854 85902987 -38173185 + (CA)n Simple_repeat Simple_repeat 2 134 0 6 1240 495 0 0 0 chr9 85902987 85903041 -38173131 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1240 233 315 138 14 chr9 85903423 85903568 -38172604 - L3b LINE CR1 -301 181 19 6 1240 336 278 55 9 chr9 85904065 85904174 -38171998 + MamRep605 Unknown Unknown 508 621 -255 6 1240 3700 178 78 14 chr9 85904445 85905243 -38170929 + Lx5 LINE L1 6090 6938 -120 6 1240 22 0 0 0 chr9 85905313 85905335 -38170837 + AT_rich Low_complexity Low_complexity 1 22 0 6 1240 422 314 143 30 chr9 85907399 85907629 -38168543 - MER97a DNA MER1_type? -496 398 143 6 1240 225 333 0 45 chr9 85908586 85908674 -38167498 - L2b LINE L2 -38 3337 3254 6 1240 520 281 21 7 chr9 85908809 85908949 -38167223 + B1F2 SINE Alu 1 142 -7 6 1240 336 294 166 22 chr9 85909044 85909267 -38166905 + MIR SINE MIR 8 262 0 6 1240 1005 230 85 0 chr9 85910413 85910661 -38165511 - Lx6 LINE L1 -55 7405 7137 6 1240 253 311 225 15 chr9 85911860 85912305 -38163867 - L2b LINE L2 -220 3155 2616 6 1240 402 329 97 14 chr9 85913654 85913861 -38162311 - MIR SINE MIR -19 243 20 6 1240 285 388 8 8 chr9 85915507 85915629 -38160543 + MLT1J1 LTR MaLR 193 314 -130 6 1240 335 340 171 10 chr9 85915761 85915954 -38160218 + MLT1J1-int LTR MaLR 2 225 -1162 6 1240 504 48 0 0 chr9 85916007 85916070 -38160102 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1240 662 324 165 52 chr9 85916100 85916634 -38159538 + MLT1J1-int LTR MaLR 352 945 -442 6 1240 398 284 244 8 chr9 85916729 85916963 -38159209 + MLT1J1-int LTR MaLR 1084 1372 -15 6 1240 863 43 0 42 chr9 85917257 85917377 -38158795 - B1_Mus1 SINE Alu 0 148 34 6 1240 861 316 113 27 chr9 85917600 85918341 -38157831 + L1MC3 LINE L1 5751 6555 -1230 6 1240 378 0 0 0 chr9 85918396 85918438 -38157734 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6 1240 804 277 174 26 chr9 85918457 85919154 -38157018 + L1MC3 LINE L1 6881 7680 -105 6 1240 237 333 0 0 chr9 85919240 85919309 -38156863 + MIR3 SINE MIR 137 205 -3 6 1240 225 0 0 0 chr9 85920842 85920867 -38155305 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1240 1163 259 55 22 chr9 85920887 85921250 -38154922 - MTE2b LTR MaLR 0 379 5 6 1240 289 266 38 0 chr9 85921445 85921524 -38154648 - MER57A-int LTR ERV1 -302 5885 5804 6 1240 529 350 135 0 chr9 85922326 85922615 -38153557 - MLT1A0 LTR MaLR -3 362 35 6 1240 333 299 103 0 chr9 85923126 85923243 -38152929 + MLT1B LTR MaLR 262 390 0 6 1240 423 0 0 0 chr9 85924248 85924295 -38151877 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1240 378 0 0 0 chr9 85924295 85924336 -38151836 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1240 250 316 67 10 chr9 85925922 85926080 -38150092 + MIR SINE MIR 35 195 -67 6 1240 325 288 73 73 chr9 85926529 85926558 -38149614 - MLT1A0 LTR MaLR -1 364 340 6 1240 1404 156 0 0 chr9 85926558 85926783 -38149389 - URR1B DNA MER1_type 0 225 1 6 1240 325 288 73 73 chr9 85926783 85926903 -38149269 - MLT1A0 LTR MaLR -26 339 215 6 1240 27 49 0 0 chr9 85927518 85927559 -38148613 + AT_rich Low_complexity Low_complexity 1 41 0 6 1240 185 337 48 12 chr9 85927564 85927648 -38148524 + L3 LINE CR1 4397 4483 -6 6 1240 936 180 0 33 chr9 85927726 85927910 -38148262 + MTB_Mm LTR MaLR 1 178 -229 6 1240 646 148 59 25 chr9 85927898 85928016 -38148156 + MTB_Mm LTR MaLR 298 419 0 6 1240 299 382 15 0 chr9 85928268 85928399 -38147773 - LTR40b LTR ERVL -216 246 114 6 1240 356 324 81 32 chr9 85928399 85928584 -38147588 - LTR40a LTR ERVL -295 224 31 6 1240 371 250 34 11 chr9 85928668 85928757 -38147415 + LTR40b LTR ERVL 372 462 0 6 1240 1923 172 50 32 chr9 85929113 85929556 -38146616 + Lx7 LINE L1 6804 7254 -442 6 1240 2904 123 4 13 chr9 85929556 85930008 -38146164 - Lx LINE L1 -1 6653 6206 6 1240 871 68 17 0 chr9 85930037 85930154 -38146018 - B1_Mm SINE Alu -13 134 16 6 1240 287 230 95 0 chr9 85930168 85930242 -38145930 + Lx7 LINE L1 7258 7338 -358 6 1240 33 43 0 0 chr9 85930270 85930317 -38145855 + AT_rich Low_complexity Low_complexity 1 47 0 6 1240 1266 186 99 58 chr9 85930317 85930508 -38145664 + Lx7 LINE L1 7341 7542 -154 6 1240 323 58 58 0 chr9 85930508 85930560 -38145612 + (CATAT)n Simple_repeat Simple_repeat 4 58 0 6 1240 1266 186 99 58 chr9 85930560 85930710 -38145462 + Lx7 LINE L1 7543 7695 -1 6 1240 6635 49 6 2 chr9 85931567 85932427 -38143745 - L1Md_F2 LINE L1 -12 6570 5708 6 1240 6616 61 0 3 chr9 85932426 85933312 -38142860 + L1Md_F2 LINE L1 4857 5739 -144 6 1240 431 314 8 0 chr9 85934631 85934755 -38141417 + B1_Mur1 SINE Alu 19 143 -6 6 1240 279 54 0 0 chr9 85935044 85935081 -38141091 + (C)n Simple_repeat Simple_repeat 1 37 0 6 1240 207 100 0 0 chr9 85935272 85935302 -38140870 + (TTC)n Simple_repeat Simple_repeat 2 31 0 6 1240 576 0 0 0 chr9 85935408 85935472 -38140700 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 6 1240 1360 79 17 0 chr9 85935491 85935669 -38140503 + B2_Mm2 SINE B2 1 181 -14 6 1240 309 277 82 46 chr9 85936538 85936841 -38139331 - L1_Mur1 LINE L1 -2316 3570 3257 6 1240 21 36 0 0 chr9 85936843 85936871 -38139301 + AT_rich Low_complexity Low_complexity 1 28 0 6 1240 388 268 45 52 chr9 85937201 85937335 -38138837 + RSINE1 SINE B4 31 163 -2 6 1240 293 345 82 27 chr9 85937669 85937815 -38138357 + ID_B1 SINE B4 70 223 -1 6 1240 704 276 122 28 chr9 85938465 85938808 -38137364 - RMER15 LTR ERVL -3 572 38 6 1240 654 345 45 38 chr9 85939604 85939802 -38136370 + B4A SINE B4 22 214 -78 6 1240 311 45 0 22 chr9 85939802 85939848 -38136324 + (CAAT)n Simple_repeat Simple_repeat 4 48 0 6 1240 654 345 45 38 chr9 85939848 85939914 -38136258 + B4A SINE B4 215 287 -5 6 1240 216 0 0 0 chr9 85940313 85940337 -38135835 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1240 685 281 53 13 chr9 85940365 85940592 -38135580 - B4 SINE B4 -50 242 7 6 1240 697 294 87 0 chr9 85940911 85941255 -38134917 + L1ME3B LINE L1 5453 5826 -414 6 1240 1185 111 22 0 chr9 85941599 85941780 -38134392 + B2_Mm1t SINE B2 1 185 -8 6 1240 235 308 15 0 chr9 85941890 85941955 -38134217 + ID4 SINE ID 1 66 -17 6 1240 398 339 71 0 chr9 85942330 85942457 -38133715 + ID_B1 SINE B4 64 199 -25 6 1240 297 0 0 0 chr9 85943603 85943636 -38132536 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1240 229 339 198 20 chr9 85944266 85944675 -38131497 + L2 LINE L2 549 1030 -2389 7 1240 21 0 0 0 chr9 85945768 85945789 -38130383 + AT_rich Low_complexity Low_complexity 1 21 0 7 1240 585 0 0 0 chr9 85945977 85946042 -38130130 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 1240 510 17 0 0 chr9 85946042 85946100 -38130072 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1240 1178 81 0 6 chr9 85946152 85946314 -38129858 + B2_Mm2 SINE B2 9 169 -26 7 1240 204 284 15 15 chr9 85946493 85946561 -38129611 + GA-rich Low_complexity Low_complexity 4 71 0 7 1240 228 24 23 47 chr9 85946985 85947028 -38129144 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 7 1240 1856 64 0 0 chr9 85947219 85947439 -38128733 - L1_Mus1 LINE L1 0 6567 6348 7 1240 6115 59 5 0 chr9 85947439 85948186 -38127986 + L1_Mus1 LINE L1 5629 6379 -188 7 1240 213 294 55 66 chr9 85948345 85948436 -38127736 - MIR3 SINE MIR 0 208 119 7 1240 2041 104 6 49 chr9 85948439 85948763 -38127409 + ORR1A2 LTR MaLR 18 327 0 7 1240 24 77 0 0 chr9 85949218 85949270 -38126902 + AT_rich Low_complexity Low_complexity 1 52 0 7 1240 228 342 0 48 chr9 85949374 85949457 -38126715 + ORR1E LTR MaLR 114 192 -167 7 1240 1167 76 14 0 chr9 85949466 85949611 -38126561 - B1_Mus1 SINE Alu 0 148 2 7 1240 342 376 30 0 chr9 85950305 85950438 -38125734 + MLT1D LTR MaLR 253 389 -116 7 1240 3187 115 15 7 chr9 85950450 85950891 -38125281 + Lx3_Mus LINE L1 6538 6985 -24 7 1240 180 0 0 0 chr9 85950891 85950911 -38125261 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 7 1240 3187 115 15 7 chr9 85950911 85950925 -38125247 + Lx3_Mus LINE L1 6986 6997 -12 7 1240 509 0 16 0 chr9 85950971 85951032 -38125140 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 7 1240 260 272 268 14 chr9 85951835 85951973 -38124199 + MamRep605 Unknown Unknown 491 663 -213 7 1240 757 297 61 44 chr9 85954276 85954714 -38121458 - LTR40c LTR ERVL 0 462 5 7 1240 3080 27 0 3 chr9 85956363 85956701 -38119471 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1240 57466 18 10 5 chr9 85956701 85963141 -38113031 - IAPEz-int LTR ERVK 0 6481 8 7 1240 3189 15 0 0 chr9 85963141 85963478 -38112694 - IAPLTR1a_Mm LTR ERVK 0 337 1 7 1240 466 288 127 68 chr9 85963835 85964051 -38112121 + B4A SINE B4 2 230 -62 7 1240 273 344 16 54 chr9 85964051 85964180 -38111992 + RSINE1 SINE B4 3 126 -39 7 1240 327 49 0 0 chr9 85964182 85964223 -38111949 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1240 213 200 0 0 chr9 85964227 85964267 -38111905 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 7 1240 223 240 26 39 chr9 85964312 85964390 -38111782 + (CATA)n Simple_repeat Simple_repeat 1 77 0 7 1240 1581 214 84 109 chr9 85964595 85965092 -38111080 + RMER19C LTR ERVK 126 610 -1 7 1240 692 307 28 11 chr9 85965425 85965603 -38110569 + B3A SINE B2 2 182 -16 7 1240 1495 151 24 35 chr9 85965910 85966198 -38109974 - RMER4A LTR ERVK -178 288 4 7 1240 468 0 0 0 chr9 85966334 85966386 -38109786 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1240 486 168 114 32 chr9 85966764 85966887 -38109285 + L1MC3 LINE L1 5855 5987 -1798 7 1240 2236 149 24 19 chr9 85966942 85967311 -38108861 + ORR1D1 LTR MaLR 1 371 -3 7 1240 1117 238 198 44 chr9 85967400 85968081 -38108091 + L1MC3 LINE L1 6763 7548 -237 7 1240 39 0 0 0 chr9 85969291 85969330 -38106842 + AT_rich Low_complexity Low_complexity 1 39 0 7 1240 203 0 0 36 chr9 85971077 85971105 -38105067 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1240 30 45 0 0 chr9 85971848 85971892 -38104280 + AT_rich Low_complexity Low_complexity 1 44 0 7 1240 213 154 0 0 chr9 85972007 85972046 -38104126 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 1240 742 293 53 10 chr9 85972068 85972275 -38103897 + ID_B1 SINE B4 2 217 -7 7 1240 4039 259 51 95 chr9 85972367 85973786 -38102386 - Lx6 LINE L1 -9 7451 6096 7 1240 180 0 0 0 chr9 85974345 85974365 -38101807 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1240 342 0 0 0 chr9 85976145 85976183 -38099989 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1240 701 46 0 0 chr9 85977631 85977718 -38098454 + L1_Mus4 LINE L1 5854 5940 -696 7 1240 296 262 128 24 chr9 85977706 85977870 -38098302 + L1MC2 LINE L1 4879 5059 -1087 7 1240 189 107 0 0 chr9 85977897 85977925 -38098247 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 7 1240 289 238 16 16 chr9 85977974 85978038 -38098134 - RSINE1 SINE B4 -95 70 7 7 1240 1640 245 119 27 chr9 85978056 85978815 -38097357 + L1MC2 LINE L1 5090 5921 -423 7 1240 364 309 110 41 chr9 85978817 85978962 -38097210 + Tigger5 DNA MER2_type 1 155 -2251 7 1240 356 294 93 50 chr9 85978959 85979108 -38097064 + Tigger5 DNA MER2_type 2239 2397 -9 7 1240 1846 147 29 73 chr9 85979108 85979452 -38096720 - ORR1A4 LTR MaLR 0 329 1 7 1240 356 294 93 50 chr9 85979452 85979463 -38096709 + Tigger5 DNA MER2_type 2398 2406 0 7 1240 270 0 0 0 chr9 85979506 85979536 -38096636 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1240 441 241 153 17 chr9 85979542 85979730 -38096442 + L1MC2 LINE L1 6017 6238 -95 7 1240 496 300 43 12 chr9 85979908 85980070 -38096102 + RMER15 LTR ERVL 296 462 -113 7 1240 4663 200 22 29 chr9 85980287 85980436 -38095736 + Lx5 LINE L1 6119 6248 -802 7 1240 3616 38 0 0 chr9 85980436 85980832 -38095340 + MTA_Mm LTR MaLR 1 396 0 7 1240 4663 200 22 29 chr9 85980832 85981620 -38094552 + Lx5 LINE L1 6249 7050 0 7 1240 8684 30 0 0 chr9 85981654 85982583 -38093589 + RLTR13B3 LTR ERVK 1 929 0 7 1241 1038 249 5 9 chr9 85985293 85985508 -38090664 - B3 SINE B2 -2 214 1 7 1241 509 360 123 37 chr9 85985671 85986181 -38089991 - MamGypLTR1a LTR Gypsy -190 594 41 7 1241 220 242 16 0 chr9 85986543 85986605 -38089567 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1241 180 111 0 0 chr9 85987173 85987200 -38088972 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1241 5253 37 2 3 chr9 85987281 85987873 -38088299 + L1Md_F2 LINE L1 5992 6582 0 7 1241 232 324 0 68 chr9 85988206 85988279 -38087893 + MTE2a LTR MaLR 29 96 -283 7 1241 1195 264 57 33 chr9 85988972 85989340 -38086832 + MTE2b LTR MaLR 3 379 0 7 1241 864 248 164 47 chr9 85990137 85990600 -38085572 - L1MB2 LINE L1 -33 6138 5619 7 1241 835 248 108 56 chr9 85990600 85990869 -38085303 - B4 SINE B4 -8 284 2 7 1241 864 248 164 47 chr9 85990869 85990918 -38085254 - L1MB2 LINE L1 -553 5618 5566 7 1241 597 276 68 26 chr9 85992747 85992937 -38083235 + B3A SINE B2 1 198 0 7 1241 452 255 71 0 chr9 85993809 85993907 -38082265 + ID_B1 SINE B4 115 219 -5 7 1241 1775 263 77 39 chr9 85993993 85994563 -38081609 + Lx8 LINE L1 6789 7380 -93 7 1241 205 182 36 18 chr9 85994563 85994619 -38081553 + GA-rich Low_complexity Low_complexity 1 57 0 7 1241 21 0 0 0 chr9 85995619 85995640 -38080532 + AT_rich Low_complexity Low_complexity 1 21 0 7 1241 2282 61 7 0 chr9 85995800 85996080 -38080092 - Lx3_Mus LINE L1 0 7009 6728 7 1241 433 251 79 89 chr9 85996288 85996344 -38079828 - CYRA11_Mm Unknown Y-chromosome -161 456 181 7 1241 1266 136 14 40 chr9 85996344 85996567 -38079605 + URR1A DNA MER1_type 1 217 -9 7 1241 2345 156 13 13 chr9 85996589 85996965 -38079207 + ORR1C1 LTR MaLR 3 378 0 7 1241 432 0 0 0 chr9 85997070 85997118 -38079054 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1241 888 285 55 71 chr9 86000354 86000860 -38075312 - Charlie1a DNA MER1_type -126 1329 832 1 1241 351 141 0 0 chr9 86001132 86001196 -38074976 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1241 1477 294 56 29 chr9 86001272 86002075 -38074097 + L1MC1 LINE L1 5449 6273 -60 3 1241 421 279 200 32 chr9 86002145 86002651 -38073521 - L1MC4 LINE L1 -237 7805 7213 4 1241 240 314 0 25 chr9 86003236 86003357 -38072815 - L1MEb LINE L1 -5133 937 820 5 1241 330 331 7 15 chr9 86003694 86003829 -38072343 + MER5A1 DNA MER1_type 7 140 -26 6 1241 838 209 134 0 chr9 86003844 86004031 -38072141 + B3 SINE B2 1 212 -4 7 1241 655 135 33 6 chr9 86004055 86004198 -38071974 + L1_Mur3 LINE L1 2037 2178 -3699 8 1241 31017 84 10 5 chr9 86004197 86009548 -38066624 + L1Md_F2 LINE L1 208 5585 -298 9 1241 7347 79 8 4 chr9 86009549 86010532 -38065640 + L1Md_F2 LINE L1 5587 6573 -9 9 1241 3119 176 42 5 chr9 86010532 86011181 -38064991 + L1_Mur3 LINE L1 5192 5864 -16 1 1241 1862 190 45 138 chr9 86011163 86011860 -38064312 + Lx7 LINE L1 7065 7696 0 1 1241 295 246 39 102 chr9 86012482 86012609 -38063563 + L1MC LINE L1 5522 5640 -704 1 1241 809 250 73 8 chr9 86013410 86013644 -38062528 + Lx7 LINE L1 7088 7336 -360 1 1241 33806 48 1 3 chr9 86013696 86019293 -38056879 + L1Md_T LINE L1 1 5589 -297 1 1241 8478 33 0 0 chr9 86019293 86020288 -38055884 + L1Md_T LINE L1 5590 6584 -1 1 1241 2990 280 73 23 chr9 86020357 86022069 -38054103 - Lx8 LINE L1 -497 6976 5172 1 1241 248 212 15 0 chr9 86022579 86022645 -38053527 + GA-rich Low_complexity Low_complexity 4 70 0 1 1241 462 79 0 0 chr9 86022649 86022712 -38053460 + (TGG)n Simple_repeat Simple_repeat 3 65 0 1 1241 234 309 0 0 chr9 86022790 86022845 -38053327 + PB1D10 SINE Alu 55 109 -8 1 1241 1224 101 0 0 chr9 86022846 86023024 -38053148 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1 1241 423 193 0 0 chr9 86023027 86023115 -38053057 + CT-rich Low_complexity Low_complexity 3 90 0 2 1241 357 82 0 0 chr9 86023109 86023158 -38053014 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 2 1241 1114 160 97 0 chr9 86024388 86024594 -38051578 + URR1A DNA MER1_type 1 226 0 2 1241 1002 308 108 25 chr9 86025916 86026774 -38049398 + L1MC3 LINE L1 6558 7603 -279 2 1241 692 322 12 6 chr9 86027015 86027187 -38048985 + B3 SINE B2 2 174 -42 2 1241 298 287 11 0 chr9 86027187 86027281 -38048891 + L1MC4a LINE L1 6893 6987 -895 2 1241 24 0 0 0 chr9 86027304 86027328 -38048844 + AT_rich Low_complexity Low_complexity 1 24 0 2 1241 614 281 88 93 chr9 86027343 86027559 -38048613 + B3A SINE B2 1 215 -1 2 1241 2034 147 15 48 chr9 86028094 86028488 -38047684 + L1_Mur2 LINE L1 5463 5843 -34 2 1241 327 49 0 0 chr9 86028575 86028616 -38047556 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2 1241 582 41 0 0 chr9 86029057 86029130 -38047042 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1241 3445 20 5 0 chr9 86029464 86029858 -38046314 - MTA_Mm LTR MaLR 0 396 1 3 1241 9751 14 0 0 chr9 86029858 86030956 -38045216 - MTA_Mm-int LTR MaLR 0 1098 1 3 1241 3489 13 5 0 chr9 86030956 86031350 -38044822 - MTA_Mm LTR MaLR 0 396 1 3 1241 942 287 61 36 chr9 86031375 86031531 -38044641 + B4 SINE B4 1 165 -127 3 1241 1143 177 81 0 chr9 86031531 86031740 -38044432 - URR1A DNA MER1_type 0 226 1 3 1241 942 287 61 36 chr9 86031740 86031861 -38044311 + B4 SINE B4 166 285 -7 3 1241 1505 66 5 0 chr9 86032361 86032559 -38043613 - L1_Mus1 LINE L1 -1 6566 6368 3 1241 4182 94 2 0 chr9 86032559 86033167 -38043005 + L1_Mm LINE L1 4539 5147 -736 3 1241 717 265 69 27 chr9 86033167 86033427 -38042745 + MER97c DNA MER1_type? 74 344 -746 3 1241 395 267 79 0 chr9 86033835 86033936 -38042236 - PB1D10 SINE Alu -8 109 1 3 1241 612 314 87 138 chr9 86033967 86034296 -38041876 - Tigger6a DNA MER2_type -266 817 432 3 1241 872 198 62 0 chr9 86034296 86034458 -38041714 + B3 SINE B2 16 187 -29 3 1241 612 314 87 138 chr9 86034458 86034807 -38041365 - Tigger6a DNA MER2_type -266 431 21 3 1241 526 249 84 42 chr9 86034837 86035076 -38041096 + MER97c DNA MER1_type? 510 755 -335 3 1241 1442 203 168 32 chr9 86035164 86035663 -38040509 + RMER2 LTR ERV1 1 567 0 4 1241 251 167 33 16 chr9 86035663 86035724 -38040448 + L1MA5 LINE L1 6233 6294 -6 4 1241 1420 56 17 0 chr9 86035747 86035925 -38040247 + B2_Mm2 SINE B2 1 181 -14 4 1241 509 232 0 10 chr9 86035972 86036072 -38040100 + B1_Mur1 SINE Alu 31 129 -20 4 1241 31 58 0 0 chr9 86036076 86036128 -38040044 + AT_rich Low_complexity Low_complexity 1 52 0 4 1241 802 286 38 35 chr9 86036210 86036576 -38039596 + L1MA4 LINE L1 5696 6062 -238 4 1241 463 98 219 0 chr9 86036645 86036727 -38039445 - URR1B DNA MER1_type 0 225 126 4 1241 538 109 11 11 chr9 86037354 86037447 -38038725 + (GGGA)n Simple_repeat Simple_repeat 4 96 0 4 1241 5563 182 34 12 chr9 86037693 86038816 -38037356 - Lx2B LINE L1 -1 6999 5852 4 1241 21 0 0 0 chr9 86038981 86039002 -38037170 + AT_rich Low_complexity Low_complexity 1 21 0 4 1241 2282 163 37 10 chr9 86040320 86040729 -38035443 + MTC LTR MaLR 1 420 -1 5 1241 258 224 14 29 chr9 86041272 86041341 -38034831 + G-rich Low_complexity Low_complexity 2 69 0 5 1241 378 0 0 0 chr9 86042102 86042144 -38034028 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1241 236 301 156 31 chr9 86042425 86042521 -38033651 - MLT1A1 LTR MaLR -219 189 82 5 1241 318 50 0 0 chr9 86044352 86044392 -38031780 + (GGA)n Simple_repeat Simple_repeat 3 42 0 5 1241 378 0 0 0 chr9 86044777 86044819 -38031353 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1241 444 277 33 22 chr9 86044989 86045170 -38031002 + RLTR42-int LTR ERVK 1218 1400 -4122 5 1241 414 325 132 66 chr9 86046658 86046931 -38029241 - B4A SINE B4 0 292 2 5 1241 5480 33 0 0 chr9 86046984 86047626 -38028546 - L1Md_T LINE L1 -2 6580 5939 5 1241 340 318 32 44 chr9 86047626 86047778 -38028394 - MER5A DNA MER1_type -11 178 28 5 1241 421 296 73 100 chr9 86048134 86048434 -38027738 + L1MC4a LINE L1 6827 7118 -877 6 1241 189 0 0 0 chr9 86048593 86048614 -38027558 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1241 879 170 7 0 chr9 86048872 86049019 -38027153 - B1_Mus1 SINE Alu 0 148 1 6 1241 1217 279 81 60 chr9 86049040 86049673 -38026499 + Lx9 LINE L1 6947 7592 -52 6 1241 383 222 28 0 chr9 86049719 86049791 -38026381 + B3 SINE B2 134 207 -9 6 1241 7203 56 10 5 chr9 86050236 86051368 -38024804 - L1_Mus2 LINE L1 0 6566 5428 6 1241 660 77 0 0 chr9 86052075 86052166 -38024006 + (GGA)n Simple_repeat Simple_repeat 2 92 0 6 1241 284 345 42 127 chr9 86052818 86052984 -38023188 + B4 SINE B4 51 202 -90 6 1241 643 282 0 47 chr9 86052870 86053019 -38023153 + B1F SINE Alu 6 147 -2 6 1241 23 0 0 0 chr9 86054275 86054298 -38021874 + AT_rich Low_complexity Low_complexity 1 23 0 6 1241 284 327 88 10 chr9 86054539 86054641 -38021531 - MIR SINE MIR -72 136 27 7 1241 459 269 22 21 chr9 86055193 86055380 -38020792 + L1M2 LINE L1 4215 4425 -1715 7 1241 3290 189 40 17 chr9 86055377 86056340 -38019832 - Lx6 LINE L1 -1278 6182 5199 7 1241 4847 208 76 2 chr9 86056332 86057528 -38018644 + Lx6 LINE L1 6175 7459 -1 7 1241 676 248 79 31 chr9 86057526 86057843 -38018329 + L1M2 LINE L1 4413 4744 -1399 7 1241 391 292 20 14 chr9 86057903 86058049 -38018123 + L1M2 LINE L1 5325 5471 -826 7 1241 570 298 17 11 chr9 86058071 86058251 -38017921 + Lx7 LINE L1 6830 7010 -686 7 1241 486 0 0 0 chr9 86058349 86058403 -38017769 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1241 258 385 74 32 chr9 86058408 86058719 -38017453 + L2 LINE L2 2490 2813 -606 7 1241 887 264 165 39 chr9 86058862 86059304 -38016868 - MLT1D LTR MaLR -7 498 1 7 1241 453 36 0 0 chr9 86059576 86059631 -38016541 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1241 270 81 0 0 chr9 86059748 86059785 -38016387 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1241 262 45 57 57 chr9 86060764 86060800 -38015372 + T-rich Low_complexity Low_complexity 38 71 0 7 1241 351 0 0 0 chr9 86060800 86060839 -38015333 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1241 262 45 57 57 chr9 86060839 86060872 -38015300 + T-rich Low_complexity Low_complexity 2 37 0 8 1241 1183 62 0 0 chr9 86061376 86061522 -38014650 - B1_Mm SINE Alu 0 147 2 8 1241 249 282 14 14 chr9 86061653 86061725 -38014447 + CT-rich Low_complexity Low_complexity 2 73 0 8 1241 927 312 22 7 chr9 86061824 86062228 -38013944 - L1M3 LINE L1 -2207 3933 3524 8 1241 2514 150 19 10 chr9 86064872 86065288 -38010884 - MTC LTR MaLR 0 421 2 8 1241 256 261 85 59 chr9 86065464 86065582 -38010590 + L2b LINE L2 3058 3178 -197 8 1241 624 271 70 22 chr9 86065594 86065758 -38010414 + RMER15 LTR ERVL 298 470 -105 8 1241 358 369 64 39 chr9 86065758 86065961 -38010211 + MTD LTR MaLR 4 211 -208 8 1241 263 320 70 8 chr9 86066069 86066198 -38009974 + RMER15 LTR ERVL 439 575 0 8 1241 732 281 22 27 chr9 86066331 86066554 -38009618 - ID_B1 SINE B4 -2 222 1 9 1241 387 289 101 73 chr9 86067115 86067432 -38008740 + L1MEc LINE L1 28 353 -6047 9 1241 2016 162 14 3 chr9 86068346 86068692 -38007480 - Lx2A1 LINE L1 -2 7006 6657 9 1241 3331 174 2 2 chr9 86068695 86069317 -38006855 + Lx2 LINE L1 5219 5840 -43 9 1241 1220 48 0 7 chr9 86069317 86069464 -38006708 + B1_Mm SINE Alu 1 146 -1 9 1241 2128 88 25 58 chr9 86069464 86069570 -38006602 + Lx2 LINE L1 5841 5934 -1063 9 1241 395 301 146 40 chr9 86069753 86070022 -38006150 + L1MEc LINE L1 470 786 -5614 9 1241 567 273 58 11 chr9 86070022 86070184 -38005988 + B3A SINE B2 1 170 -28 9 1241 324 0 0 0 chr9 86070184 86070220 -38005952 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1241 567 273 58 11 chr9 86070220 86070231 -38005941 + B3A SINE B2 171 181 -17 9 1241 395 301 146 40 chr9 86070231 86070311 -38005861 + L1MEc LINE L1 787 856 -5544 9 1241 722 46 134 0 chr9 86070412 86070524 -38005648 - B1_Mus2 SINE Alu 0 149 19 9 1241 207 0 0 0 chr9 86070993 86071016 -38005156 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 9 1241 985 221 73 9 chr9 86071126 86071345 -38004827 + ORR1D2 LTR MaLR 138 370 0 9 1241 21 0 0 0 chr9 86072103 86072124 -38004048 + AT_rich Low_complexity Low_complexity 1 21 0 1 1241 1597 180 99 14 chr9 86072964 86073308 -38002864 - ORR1D1 LTR MaLR 0 374 2 1 1241 602 252 54 62 chr9 86073600 86073824 -38002348 + ID_B1 SINE B4 1 222 -2 1 1241 423 0 0 0 chr9 86074265 86074312 -38001860 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 1241 415 369 87 51 chr9 86074959 86075433 -38000739 + Charlie7 DNA MER1_type 195 685 -1927 1 1241 299 331 89 22 chr9 86075435 86075614 -38000558 - L2a LINE L2 -13 3413 3223 1 1241 307 217 43 0 chr9 86075718 86075787 -38000385 + B1F1 SINE Alu 70 141 -8 1 1241 486 0 0 0 chr9 86075788 86075842 -38000330 + (TAA)n Simple_repeat Simple_repeat 3 56 0 1 1241 227 289 19 0 chr9 86076589 86076641 -37999531 + B4A SINE B4 224 276 -16 1 1241 222 37 0 0 chr9 86077290 86077317 -37998855 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1241 1489 97 107 25 chr9 86079444 86079686 -37996486 + Lx LINE L1 6393 6654 0 1 1241 1170 117 0 0 chr9 86079696 86079875 -37996297 + (GGAAA)n Simple_repeat Simple_repeat 2 180 0 1 1241 234 0 0 0 chr9 86079876 86079902 -37996270 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 1 1241 768 293 121 10 chr9 86080686 86080983 -37995189 - L3 LINE CR1 -1 4488 4159 1 1241 269 291 47 28 chr9 86082129 86082235 -37993937 - MIR SINE MIR -135 127 20 1 1241 198 333 33 11 chr9 86082607 86082698 -37993474 - L3b LINE CR1 -83 399 307 1 1241 5768 61 30 0 chr9 86083116 86083966 -37992206 - L1_Mus1 LINE L1 -628 5939 5073 1 1241 4629 79 5 16 chr9 86083966 86084605 -37991567 + L1_Mus1 LINE L1 5935 6566 -1 1 1241 252 267 64 45 chr9 86086575 86086685 -37989487 + RMER15 LTR ERVL 448 559 -16 1 1241 36289 29 0 0 chr9 86086866 86093084 -37983088 - L1Md_T LINE L1 0 6585 271 1 1241 315 0 0 0 chr9 86093789 86093824 -37982348 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1241 483 239 41 103 chr9 86094324 86094339 -37981833 + B4 SINE B4 80 215 -77 1 1241 928 128 0 14 chr9 86094339 86094469 -37981703 + B1_Mus2 SINE Alu 7 136 -11 1 1241 501 47 0 0 chr9 86094469 86094533 -37981639 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 1 1241 1035 152 0 0 chr9 86094533 86094710 -37981462 + GA-rich Low_complexity Low_complexity 1 178 0 1 1241 928 128 0 14 chr9 86094710 86094721 -37981451 + B1_Mus2 SINE Alu 137 146 -1 1 1241 210 154 0 88 chr9 86094722 86094779 -37981393 + GA-rich Low_complexity Low_complexity 4 55 0 1 1241 286 292 105 33 chr9 86095393 86095504 -37980668 + MIRb SINE MIR 49 170 -98 1 1241 182 62 31 0 chr9 86095504 86095536 -37980636 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1241 286 292 105 33 chr9 86095536 86095576 -37980596 + MIRb SINE MIR 171 211 -57 1 1241 697 189 0 36 chr9 86095590 86095727 -37980445 + B1_Mur2 SINE Alu 3 134 -15 1 1241 1091 149 118 10 chr9 86095766 86095969 -37980203 + URR1A DNA MER1_type 1 225 -1 1 1241 2370 171 50 2 chr9 86096319 86096717 -37979455 - MTD LTR MaLR 0 419 3 1 1241 330 26 0 0 chr9 86097908 86097947 -37978225 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1241 535 288 7 50 chr9 86098096 86098235 -37977937 - RSINE1 SINE B4 -14 151 19 1 1241 813 231 91 103 chr9 86098250 86098482 -37977690 - B4 SINE B4 -60 232 4 1 1241 800 187 29 0 chr9 86099351 86099490 -37976682 + B1_Mur4 SINE Alu 2 144 -6 1 1241 1840 263 63 36 chr9 86100106 86100793 -37975379 - Lx9 LINE L1 -613 7031 6327 1 1241 734 67 9 0 chr9 86100802 86100907 -37975265 + (TG)n Simple_repeat Simple_repeat 1 106 0 1 1241 1479 189 128 17 chr9 86100908 86101313 -37974859 - L1_Rod LINE L1 -777 5070 4621 1 1241 536 279 88 0 chr9 86101431 86101578 -37974594 - RSINE1 SINE B4 -2 163 4 1 1241 245 310 10 112 chr9 86101591 86101689 -37974483 + MT2B LTR ERVL 153 240 -361 1 1241 565 270 24 0 chr9 86101615 86101741 -37974431 + B1_Mur1 SINE Alu 12 140 -9 1 1241 644 45 0 11 chr9 86101909 86101998 -37974174 + (GGGA)n Simple_repeat Simple_repeat 1 88 0 1 1241 25 51 0 0 chr9 86102509 86102548 -37973624 + AT_rich Low_complexity Low_complexity 1 39 0 1 1241 575 262 182 14 chr9 86102674 86102883 -37973289 - B4A SINE B4 -6 286 43 1 1241 1900 213 141 8 chr9 86102885 86103303 -37972869 + MT2A LTR ERVL 1 453 -80 1 1241 488 59 15 0 chr9 86103303 86103371 -37972801 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1241 1900 213 141 8 chr9 86103371 86103420 -37972752 + MT2A LTR ERVL 454 530 -3 1 1241 278 280 74 21 chr9 86104279 86104374 -37971798 - RMER15 LTR ERVL -105 470 371 1 1241 521 287 84 0 chr9 86104511 86104713 -37971459 - Lx8 LINE L1 -360 7113 6895 1 1241 565 227 0 45 chr9 86104833 86105007 -37971165 - MTC LTR MaLR -252 167 7 1 1241 737 241 5 5 chr9 86105075 86105267 -37970905 + L1MC2 LINE L1 5634 5825 -519 1 1241 447 265 93 20 chr9 86105315 86105465 -37970707 + MER5A DNA MER1_type 5 165 -24 1 1241 441 316 40 30 chr9 86105557 86105759 -37970413 + MER96B DNA hAT 24 227 -190 1 1241 294 301 58 40 chr9 86106208 86106381 -37969791 - MER57C2 LTR ERV1 -9 425 250 1 1241 543 200 0 148 chr9 86106613 86106795 -37969377 + Lx3_Mus LINE L1 211 365 -6619 1 1241 2851 96 107 3 chr9 86106905 86107558 -37968614 + Lx3_Mus LINE L1 676 1396 -4490 1 1241 22143 81 30 12 chr9 86107552 86110987 -37965185 - Lx3_Mus LINE L1 -977 4909 1412 1 1241 6863 75 5 22 chr9 86110986 86111333 -37964839 + Lx3_Mus LINE L1 4911 5255 -631 1 1241 1034 85 0 41 chr9 86111333 86111480 -37964692 + B1_Mm SINE Alu 1 141 -6 1 1241 198 0 0 0 chr9 86111483 86111505 -37964667 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1241 9534 97 14 21 chr9 86111505 86113272 -37962900 + Lx3_Mus LINE L1 5256 7009 0 1 1241 23 0 0 0 chr9 86113272 86113295 -37962877 + AT_rich Low_complexity Low_complexity 1 23 0 1 1241 798 139 0 0 chr9 86113768 86113905 -37962267 + (TTCC)n Simple_repeat Simple_repeat 4 140 0 1 1241 301 254 152 13 chr9 86113905 86114000 -37962172 - PB1D10 SINE Alu -16 104 1 1 155 2903 77 8 5 chr9 86114127 86114504 -37961668 - L1_Mus4 LINE L1 -3 6633 6256 1 1242 3633 20 8 0 chr9 86114624 86115017 -37961155 + MTA_Mm LTR MaLR 1 396 0 1 1242 396 0 0 0 chr9 86115083 86115127 -37961045 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1242 6162 136 31 6 chr9 86115371 86116303 -37959869 + RMER17B LTR ERVK 1 955 -3 1 1242 458 239 166 7 chr9 86116720 86116859 -37959313 + MT2A LTR ERVL 1 161 -372 1 1242 491 251 165 36 chr9 86116880 86117074 -37959098 + ORR1D1 LTR MaLR 156 374 0 1 1242 223 269 45 98 chr9 86117183 86117315 -37958857 - MIRb SINE MIR -108 160 36 1 1242 217 135 0 37 chr9 86117779 86117833 -37958339 + (TTG)n Simple_repeat Simple_repeat 2 53 0 1 1242 807 282 0 26 chr9 86117852 86118045 -37958127 - B3A SINE B2 -10 188 1 1 1242 22 35 0 0 chr9 86119616 86119645 -37956527 + AT_rich Low_complexity Low_complexity 1 29 0 1 1242 457 295 56 94 chr9 86119784 86119997 -37956175 - MER20 DNA MER1_type -14 205 1 1 1242 1133 95 6 0 chr9 86121128 86121297 -37954875 + (GAAA)n Simple_repeat Simple_repeat 3 172 0 1 1242 286 226 79 56 chr9 86121303 86121392 -37954780 + B1F1 SINE Alu 9 99 -21 1 1242 547 217 0 0 chr9 86121716 86121808 -37954364 + B3 SINE B2 2 93 -123 1 1242 604 158 10 10 chr9 86122003 86122099 -37954073 + B3 SINE B2 110 205 -11 1 1242 32 0 0 0 chr9 86122101 86122133 -37954039 + AT_rich Low_complexity Low_complexity 1 32 0 1 1242 810 249 74 5 chr9 86122188 86122390 -37953782 + B3 SINE B2 1 216 0 1 1242 21 36 0 0 chr9 86122423 86122451 -37953721 + AT_rich Low_complexity Low_complexity 1 28 0 1 1242 215 283 0 0 chr9 86123166 86123219 -37952953 + GA-rich Low_complexity Low_complexity 2 54 0 1 1242 318 174 116 0 chr9 86124850 86124919 -37951253 - ID4_ SINE ID -3 80 4 1 1242 380 265 10 20 chr9 86127770 86127870 -37948302 + MTEa LTR MaLR 15 113 -266 1 1242 199 359 11 11 chr9 86129584 86129677 -37946495 + MER5A DNA MER1_type 7 99 -90 1 1242 1110 118 0 0 chr9 86130182 86130352 -37945820 + (CCCG)n Simple_repeat Simple_repeat 3 172 0 1 1242 2004 264 30 24 chr9 86130936 86131526 -37944646 + RCHARR1 DNA MER1_type 4 597 -377 1 1242 333 0 0 0 chr9 86131530 86131567 -37944605 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1242 2322 182 22 3 chr9 86131578 86131986 -37944186 + MTD LTR MaLR 4 411 -8 1 1242 503 278 157 60 chr9 86132688 86133095 -37943077 + RLTR15 LTR ERVK 14 336 -23 1 1242 470 267 119 82 chr9 86133128 86133287 -37942885 + B4 SINE B4 53 217 -75 1 1242 707 172 0 24 chr9 86133171 86133296 -37942876 + B1_Mur1 SINE Alu 26 147 -2 1 1242 227 188 412 10 chr9 86133306 86133403 -37942769 + B1F2 SINE Alu 3 138 -11 1 1242 415 329 12 93 chr9 86133329 86133490 -37942682 + B4 SINE B4 145 292 0 1 1242 320 336 10 0 chr9 86133567 86133671 -37942501 - MER5A1 DNA MER1_type -3 163 59 1 1242 391 310 34 17 chr9 86134646 86134764 -37941408 - B4 SINE B4 -172 120 1 1 1242 786 278 103 21 chr9 86134823 86135202 -37940970 - Charlie1a DNA MER1_type -154 1301 892 1 1242 362 254 115 33 chr9 86135216 86135338 -37940834 - B3 SINE B2 0 216 85 1 1242 1271 279 88 79 chr9 86135406 86135998 -37940174 - Charlie1a DNA MER1_type -636 819 223 1 1242 543 31 0 0 chr9 86136431 86136496 -37939676 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1242 3681 182 24 96 chr9 86138360 86139233 -37936939 + RLTR40 LTR ERVK 1 810 -7 1 1242 7329 211 43 43 chr9 86139706 86141050 -37935122 + Lx7 LINE L1 5981 7332 -364 1 1242 442 30 45 0 chr9 86141050 86141117 -37935055 + (TTTTG)n Simple_repeat Simple_repeat 3 72 0 1 1242 7329 211 43 43 chr9 86141117 86141461 -37934711 + Lx7 LINE L1 7333 7670 -26 1 1242 712 83 0 0 chr9 86141624 86141720 -37934452 + BC1_Mm scRNA scRNA 1 96 -56 1 1242 480 353 0 0 chr9 86142038 86142171 -37934001 - ID_B1 SINE B4 -4 220 88 1 1242 299 314 56 44 chr9 86142331 86142491 -37933681 - MIRm SINE MIR -78 184 23 1 1242 303 28 0 0 chr9 86142728 86142764 -37933408 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1242 283 336 134 14 chr9 86142858 86142897 -37933275 + B4 SINE B4 46 101 -191 2 1242 461 289 92 12 chr9 86142897 86143031 -37933141 + B1_Mur1 SINE Alu 2 141 -6 2 1242 1659 114 4 0 chr9 86143120 86143348 -37932824 + Lx4A LINE L1 6183 6411 -647 2 1242 2037 129 23 0 chr9 86143343 86143653 -37932519 + Lx4A LINE L1 6300 6616 -442 2 1242 227 258 40 30 chr9 86143647 86143747 -37932425 + L1M4c LINE L1 1313 1413 -4971 2 1242 225 0 0 0 chr9 86144376 86144401 -37931771 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1242 702 259 72 38 chr9 86144444 86144653 -37931519 + B3 SINE B2 1 216 0 2 1242 348 167 0 0 chr9 86144787 86144859 -37931313 + CT-rich Low_complexity Low_complexity 2 73 0 2 1242 304 340 41 0 chr9 86145608 86145705 -37930467 - B1F SINE Alu -9 140 40 2 1242 1518 65 16 5 chr9 86145763 86145948 -37930224 - B2_Mm2 SINE B2 -8 187 1 2 1242 1942 214 98 162 chr9 86146019 86146672 -37929500 - RMER19C LTR ERVK 0 611 1 2 1242 831 169 7 60 chr9 86146697 86146848 -37929324 + B1_Mur4 SINE Alu 2 144 -6 2 1242 429 250 0 29 chr9 86147574 86147714 -37928458 + Lx6 LINE L1 7309 7444 -16 2 1242 1527 185 184 93 chr9 86147853 86148325 -37927847 - MT2A LTR ERVL 0 533 19 2 1242 396 155 0 0 chr9 86148775 86148846 -37927326 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1242 346 269 15 0 chr9 86149943 86150010 -37926162 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 2 1242 198 0 0 0 chr9 86150589 86150611 -37925561 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1242 225 65 0 0 chr9 86150611 86150642 -37925530 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1242 262 355 0 13 chr9 86150819 86150896 -37925276 - B4 SINE B4 -3 289 214 2 1242 245 193 0 17 chr9 86150904 86150962 -37925210 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 2 1242 691 266 104 15 chr9 86150963 86151165 -37925007 - B4 SINE B4 -70 222 3 2 1242 741 202 153 12 chr9 86151531 86151701 -37924471 - B3 SINE B2 -10 206 13 2 1242 4861 67 10 7 chr9 86151827 86152426 -37923746 - L1_Mus2 LINE L1 -3 6563 5963 2 1242 918 243 39 47 chr9 86152743 86152998 -37923174 + Lx6 LINE L1 7188 7440 -20 2 1242 21 0 0 0 chr9 86152998 86153019 -37923153 + AT_rich Low_complexity Low_complexity 1 21 0 2 1242 240 329 14 0 chr9 86153820 86153890 -37922282 + ID4 SINE ID 2 72 -11 2 1242 351 0 0 0 chr9 86153903 86153942 -37922230 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1242 500 302 88 41 chr9 86154474 86154745 -37921427 - Lx9 LINE L1 -345 7299 6886 2 1242 432 0 0 0 chr9 86155407 86155455 -37920717 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1242 675 269 106 8 chr9 86155545 86155812 -37920360 + L1MC4 LINE L1 6705 7036 -1006 2 1242 333 307 120 83 chr9 86155856 86156085 -37920087 + L1MC4 LINE L1 7238 7460 -582 2 1242 1151 238 0 0 chr9 86156085 86156295 -37919877 + B3 SINE B2 3 212 -4 2 1242 333 307 120 83 chr9 86156295 86156597 -37919575 + L1MC4 LINE L1 7461 7789 -253 2 1242 479 103 0 42 chr9 86156683 86156754 -37919418 + B3A SINE B2 1 68 -130 2 1242 495 270 103 0 chr9 86156755 86156929 -37919243 - L1M2 LINE L1 -1267 4876 4685 2 1242 246 232 0 28 chr9 86156945 86157016 -37919156 + L1MA4 LINE L1 4958 5026 -1117 2 1242 1360 247 136 56 chr9 86157069 86157554 -37918618 + RMER19C LTR ERVK 88 611 0 2 1242 1243 292 93 25 chr9 86157563 86158365 -37917807 + L1MA4 LINE L1 5078 5941 -359 2 1242 831 290 39 4 chr9 86158755 86158987 -37917185 + B4A SINE B4 45 284 -8 2 1242 192 40 0 0 chr9 86159016 86159041 -37917131 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1242 21 71 0 0 chr9 86159894 86159936 -37916236 + AT_rich Low_complexity Low_complexity 1 42 0 2 1242 260 287 83 0 chr9 86160942 86161050 -37915122 + Lx8 LINE L1 7355 7471 -2 2 1242 677 283 20 55 chr9 86161077 86161279 -37914893 - B3A SINE B2 -1 197 3 2 1242 715 172 20 40 chr9 86161312 86161463 -37914709 + B1_Mur2 SINE Alu 2 149 0 2 1242 1427 256 63 6 chr9 86161583 86161933 -37914239 - MTE2b LTR MaLR -9 370 1 2 1242 320 312 95 66 chr9 86162080 86162240 -37913932 - MLT1A0 LTR MaLR -8 357 184 2 1242 378 0 0 0 chr9 86162240 86162282 -37913890 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1242 320 312 95 66 chr9 86162282 86162426 -37913746 - MLT1A0 LTR MaLR -182 183 44 2 1242 615 224 421 50 chr9 86162488 86162766 -37913406 + RLTR14 LTR ERV1 2 382 0 2 1242 225 241 33 88 chr9 86163067 86163158 -37913014 - ORR1D1 LTR MaLR -25 349 264 2 1242 992 270 20 28 chr9 86163175 86163430 -37912742 + MTEa LTR MaLR 127 379 0 2 1242 569 258 39 73 chr9 86163569 86163774 -37912398 - B3A SINE B2 0 198 1 2 1242 977 326 31 29 chr9 86164344 86164833 -37911339 + L1MC3 LINE L1 6239 6716 -1326 2 1242 23 68 0 0 chr9 86165023 86165067 -37911105 + AT_rich Low_complexity Low_complexity 1 44 0 2 1242 244 281 0 0 chr9 86165666 86165723 -37910449 - tRNA-Ala-GCA tRNA tRNA -8 67 11 2 1242 522 91 0 0 chr9 86166160 86166237 -37909935 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 1242 385 325 42 38 chr9 86166758 86166995 -37909177 - L1MB8 LINE L1 -2 6176 5939 2 1242 1313 248 21 18 chr9 86167028 86167365 -37908807 - MTD LTR MaLR 0 419 82 2 1242 297 165 76 19 chr9 86167416 86167521 -37908651 + (TTTAA)n Simple_repeat Simple_repeat 4 114 0 2 1242 449 143 13 0 chr9 86167521 86167598 -37908574 - MTD LTR MaLR -343 78 1 2 1242 581 191 42 14 chr9 86167598 86167740 -37908432 + RCHARR1 DNA MER1_type 775 920 -54 2 1242 506 334 107 35 chr9 86168054 86168471 -37907701 + MLT1E2 LTR MaLR 140 577 -50 2 1242 233 350 61 58 chr9 86168500 86168861 -37907311 + LTR83 LTR ERVL 6 367 -413 2 1242 1028 246 66 92 chr9 86168875 86169005 -37907167 + L1MB3 LINE L1 5709 5818 -365 2 1242 306 0 0 0 chr9 86169005 86169039 -37907133 + (CATA)n Simple_repeat Simple_repeat 2 35 0 2 1242 1028 246 66 92 chr9 86169039 86169378 -37906794 + L1MB3 LINE L1 5819 6166 -17 2 1242 562 307 41 31 chr9 86169391 86169586 -37906586 + B3A SINE B2 2 198 0 2 1242 459 233 144 16 chr9 86169716 86169973 -37906199 + Charlie2b DNA MER1_type 1993 2282 -500 2 1242 21 57 0 0 chr9 86170010 86170045 -37906127 + AT_rich Low_complexity Low_complexity 1 35 0 2 1242 1314 56 0 0 chr9 86170897 86171077 -37905095 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1242 702 192 140 37 chr9 86171101 86171344 -37904828 + MTEa-int LTR MaLR 1311 1578 -2 2 1242 1087 278 64 33 chr9 86171346 86171707 -37904465 + MTEa LTR MaLR 1 372 -7 2 1242 1254 234 99 15 chr9 86171724 86171864 -37904308 + MTE2b LTR MaLR 18 168 -211 2 1242 531 0 0 0 chr9 86171864 86171923 -37904249 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1242 450 0 0 0 chr9 86171924 86171974 -37904198 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 2 1242 1254 234 99 15 chr9 86171974 86172165 -37904007 + MTE2b LTR MaLR 169 376 -3 2 1242 245 262 12 48 chr9 86172486 86172570 -37903602 - RLTR11A LTR ERVK -336 192 112 2 1242 542 292 20 20 chr9 86172903 86173050 -37903122 + B1F SINE Alu 1 147 -2 2 1242 227 224 0 62 chr9 86173167 86173248 -37902924 - L1MEd LINE L1 -5079 1040 965 2 1242 279 0 0 0 chr9 86175851 86175882 -37900290 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1242 216 0 0 0 chr9 86176145 86176169 -37900003 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1242 355 315 114 46 chr9 86177672 86178121 -37898051 + MER31A LTR ERV1 1 462 -4 2 1242 319 205 92 17 chr9 86178206 86178325 -37897847 - Lx9 LINE L1 -4 7640 7513 2 1242 1315 178 4 20 chr9 86178325 86178540 -37897632 + RMER15 LTR ERVL 6 221 -354 2 1242 4756 86 6 5 chr9 86178540 86179163 -37897009 + RLTR1 LTR ERV1 1 624 0 2 1242 1315 178 4 20 chr9 86179163 86179199 -37896973 + RMER15 LTR ERVL 222 253 -322 2 1242 1066 126 4 123 chr9 86179207 86179434 -37896738 - RMER6A LTR ERVK -6 750 551 2 1242 1035 171 140 47 chr9 86179425 86179682 -37896490 - RMER15 LTR ERVL -47 528 248 2 1242 2081 140 207 17 chr9 86179682 86180135 -37896037 + RMER6A LTR ERVK 1 539 -217 2 1242 231 149 85 0 chr9 86180132 86180179 -37895993 + RMER15 LTR ERVL 525 575 0 2 1242 1104 195 35 19 chr9 86180183 86180439 -37895733 - Lx9 LINE L1 -127 7517 7258 2 1242 225 226 32 0 chr9 86180439 86180501 -37895671 - MER5A DNA MER1_type -118 71 8 2 1242 208 349 18 28 chr9 86181081 86181190 -37894982 + L3 LINE CR1 3594 3701 -788 2 1242 347 294 108 20 chr9 86181294 86181524 -37894648 - L2b LINE L2 0 3426 3183 2 1242 350 288 31 16 chr9 86182051 86182178 -37893994 - MER77 LTR ERVL -8 599 471 2 1242 212 102 60 20 chr9 86182358 86182408 -37893764 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1242 1022 187 3 222 chr9 86182550 86182901 -37893271 - RMER1B Other Other -420 646 373 2 1242 511 138 10 31 chr9 86182907 86183004 -37893168 + MTC LTR MaLR 302 396 -25 2 1242 2113 60 23 16 chr9 86183125 86183430 -37892742 - IAPLTR2b LTR ERVK -20 307 1 2 1242 4592 8 0 0 chr9 86183520 86184013 -37892159 + MT2_Mm LTR ERVL 1 493 0 2 1242 48766 16 0 1 chr9 86184013 86189377 -37886795 + MERVL-int LTR ERVL 1 5360 -125 2 1242 362 167 46 35 chr9 86189377 86189464 -37886708 + ORR1A3-int LTR MaLR 553 640 -1323 2 1242 321 0 0 0 chr9 86189464 86189502 -37886670 + MERVL-int LTR ERVL 5448 5485 0 2 1242 4606 6 0 0 chr9 86189502 86189995 -37886177 + MT2_Mm LTR ERVL 1 493 0 2 1242 466 364 31 25 chr9 86190227 86190551 -37885621 - MLT1A0 LTR MaLR -35 330 5 2 1242 423 261 58 7 chr9 86191216 86191355 -37884817 + RSINE1 SINE B4 3 148 -17 2 1242 309 222 16 0 chr9 86193355 86193418 -37882754 + Lx7 LINE L1 6419 6482 -1214 2 1242 332 261 10 42 chr9 86194236 86194332 -37881840 + PB1D10 SINE Alu 23 115 -2 2 1242 1186 86 97 0 chr9 86194556 86194731 -37881441 - B2_Mm1t SINE B2 -1 192 1 2 1242 462 272 194 27 chr9 86195093 86195506 -37880666 - MER54B LTR ERVL 0 793 312 2 1242 1466 246 64 16 chr9 86195526 86195914 -37880258 - MTD LTR MaLR -12 407 1 2 1242 242 226 161 0 chr9 86195914 86196005 -37880167 - MER54B LTR ERVL -491 302 197 2 1242 1494 184 129 11 chr9 86196459 86196822 -37879350 + MTD LTR MaLR 12 417 -2 2 1242 306 0 0 0 chr9 86197450 86197484 -37878688 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1242 221 191 20 78 chr9 86197771 86197822 -37878350 - PB1D9 SINE Alu -11 109 62 2 1242 185 318 16 0 chr9 86198100 86198163 -37878009 + L2c LINE L2 3257 3320 -67 2 1242 209 314 0 0 chr9 86199063 86199133 -37877039 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1242 338 253 88 0 chr9 86199194 86199285 -37876887 - B4A SINE B4 -95 197 99 3 1242 2175 97 3 0 chr9 86199295 86199616 -37876556 + ORR1A2 LTR MaLR 6 327 0 3 1242 284 297 22 0 chr9 86199616 86199705 -37876467 - B4A SINE B4 -192 100 10 3 1242 244 317 23 47 chr9 86200037 86200166 -37876006 + MER20 DNA MER1_type 55 180 -39 3 1242 180 0 0 0 chr9 86202067 86202087 -37874085 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1242 186 111 27 27 chr9 86202560 86202597 -37873575 + MIRc SINE MIR 171 207 -61 3 1242 22 0 0 0 chr9 86202712 86202734 -37873438 + AT_rich Low_complexity Low_complexity 1 22 0 3 1242 412 205 110 8 chr9 86203083 86203201 -37872971 + MER20 DNA MER1_type 38 167 -52 3 1242 205 316 94 14 chr9 86203212 86203356 -37872816 + MIRc SINE MIR 13 164 -98 3 1242 21 0 0 0 chr9 86203897 86203918 -37872254 + AT_rich Low_complexity Low_complexity 1 21 0 3 1242 288 137 0 0 chr9 86204022 86204073 -37872099 + (T)n Simple_repeat Simple_repeat 1 51 0 3 1242 43 35 0 0 chr9 86204649 86204706 -37871466 + AT_rich Low_complexity Low_complexity 1 57 0 3 1242 991 199 73 0 chr9 86204711 86204902 -37871270 - B3 SINE B2 -10 206 2 3 1242 281 113 57 0 chr9 86207372 86207425 -37868747 + T-rich Low_complexity Low_complexity 1 56 0 3 1242 297 326 100 14 chr9 86207592 86207732 -37868440 + MER5A DNA MER1_type 15 166 -23 3 1242 376 280 178 11 chr9 86208234 86208493 -37867679 - L1MA4A LINE L1 -277 6023 5716 3 1242 225 265 174 0 chr9 86208526 86208624 -37867548 - L1M2 LINE L1 -530 5641 5527 3 1242 631 288 6 0 chr9 86208763 86208785 -37867387 - RSINE1 SINE B4 0 165 144 3 1242 351 0 0 0 chr9 86208785 86208824 -37867348 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1242 631 288 6 0 chr9 86208824 86208964 -37867208 - RSINE1 SINE B4 -22 143 3 3 1242 737 275 70 7 chr9 86209007 86209307 -37866865 - L1M2 LINE L1 -869 5274 4956 3 1242 224 189 0 54 chr9 86209706 86209762 -37866410 + B1F SINE Alu 1 53 -96 3 1242 651 112 0 0 chr9 86210671 86210769 -37865403 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1242 790 314 105 29 chr9 86210985 86211530 -37864642 + L1MD2 LINE L1 5758 6343 -16 3 1242 287 191 15 0 chr9 86212108 86212176 -37863996 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1242 726 254 27 53 chr9 86212199 86212386 -37863786 - B3A SINE B2 -16 182 1 3 1242 243 288 75 45 chr9 86212461 86212661 -37863511 - L1M5 LINE L1 -339 5785 5580 3 1242 306 0 0 0 chr9 86212930 86212964 -37863208 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1242 393 296 18 9 chr9 86212968 86213077 -37863095 - RSINE1 SINE B4 -51 114 5 3 1242 291 296 9 56 chr9 86213845 86213978 -37862194 + Lx8 LINE L1 7163 7372 -272 3 1242 462 79 0 0 chr9 86214010 86214073 -37862099 + (TCTCCC)n Simple_repeat Simple_repeat 3 65 0 3 1242 26 0 0 0 chr9 86214192 86214218 -37861954 + AT_rich Low_complexity Low_complexity 1 26 0 3 1242 1842 180 49 35 chr9 86214268 86214637 -37861535 - ORR1D1 LTR MaLR 0 374 1 3 1242 351 0 0 0 chr9 86215531 86215570 -37860602 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1242 275 224 174 18 chr9 86216901 86217010 -37859162 + ID_B1 SINE B4 99 224 0 3 1242 211 185 204 0 chr9 86217542 86217596 -37858576 + ID SINE ID 5 69 -155 3 1242 4706 94 47 0 chr9 86217741 86218400 -37857772 + Lx3A LINE L1 6289 6978 -3 3 1242 448 281 21 7 chr9 86220156 86220296 -37855876 + L1M5 LINE L1 5598 5739 -425 3 1242 568 216 272 12 chr9 86220486 86220659 -37855513 - ID_B1 SINE B4 -4 220 3 3 1242 222 250 31 77 chr9 86222390 86222455 -37853717 + L2b LINE L2 3314 3375 0 3 1242 847 236 24 62 chr9 86222855 86223063 -37853109 + B4A SINE B4 33 232 -60 3 1242 1274 61 7 0 chr9 86223063 86223210 -37852962 + B1_Mus1 SINE Alu 1 148 0 3 1242 266 250 0 14 chr9 86223228 86223301 -37852871 + B4A SINE B4 215 286 -6 3 1242 4403 138 105 3 chr9 86225518 86226187 -37849985 + RMER19A LTR ERVK 1 737 0 3 1242 1085 257 4 32 chr9 86226309 86226590 -37849582 + Lx9 LINE L1 7074 7346 -298 3 1242 255 27 0 51 chr9 86227720 86227759 -37848413 - LTR23-int LTR ERV1 -18 5105 5069 3 1242 665 273 65 0 chr9 86227789 86227928 -37848244 + RSINE1 SINE B4 5 152 -13 3 1242 691 313 113 11 chr9 86228166 86228431 -37847741 + MER2 DNA MER2_type 2 293 -52 3 1242 785 132 7 0 chr9 86229710 86229854 -37846318 + (GA)n Simple_repeat Simple_repeat 2 146 0 3 1242 244 282 56 14 chr9 86230058 86230130 -37846042 - Tigger15a DNA TcMar -165 550 476 3 1242 351 65 0 0 chr9 86231340 86231386 -37844786 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1242 253 333 13 26 chr9 86231612 86231766 -37844406 + L1M3e LINE L1 203 354 -6676 3 1242 258 310 163 0 chr9 86232258 86232387 -37843785 + L1M3e LINE L1 193 342 -6688 3 1242 206 32 0 31 chr9 86233252 86233284 -37842888 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1242 28 0 0 0 chr9 86234030 86234058 -37842114 + AT_rich Low_complexity Low_complexity 1 28 0 3 1242 216 0 0 0 chr9 86234181 86234205 -37841967 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1242 242 305 54 90 chr9 86234212 86234378 -37841794 + L1MCa LINE L1 1659 1818 -4751 3 1242 234 341 16 16 chr9 86234639 86234764 -37841408 + L1MCa LINE L1 2123 2247 -4137 3 1242 1407 269 98 8 chr9 86234839 86235352 -37840820 + L1MCa LINE L1 2348 2906 -3473 3 1242 865 278 35 15 chr9 86235565 86235857 -37840315 + L1MCa LINE L1 2851 3174 -3205 3 1242 2524 291 65 35 chr9 86235861 86237539 -37838633 + L1MCa LINE L1 3733 5511 -865 3 1242 458 271 22 4 chr9 86237632 86237820 -37838352 + L1MCa LINE L1 5587 5776 -649 3 1242 316 279 76 23 chr9 86237949 86238081 -37838091 - Lx8 LINE L1 -1577 5896 5758 3 1242 546 302 58 13 chr9 86239343 86239568 -37836604 + MIR SINE MIR 24 258 -4 3 1242 253 323 60 66 chr9 86240393 86240559 -37835613 + MLT1N2 LTR MaLR 14 178 -384 3 1242 710 245 38 19 chr9 86241222 86241434 -37834738 - L1MC1 LINE L1 -407 5926 5711 3 1242 3234 30 0 0 chr9 86241435 86241796 -37834376 + L1Md_A LINE L1 6222 6582 0 3 1242 671 131 0 0 chr9 86241818 86241925 -37834247 + L1Md_F LINE L1 11 117 -6402 3 1242 422 282 257 1 chr9 86241939 86242295 -37833877 - L1MC1 LINE L1 -612 5721 5277 3 1242 2695 80 3 0 chr9 86242339 86242665 -37833507 - ORR1A2 LTR MaLR 0 327 1 3 1242 230 288 0 23 chr9 86243015 86243142 -37833030 - Lx2B LINE L1 -1128 5922 5801 3 1242 824 242 72 49 chr9 86243164 86243237 -37832935 - L1MC1 LINE L1 -891 5255 5181 3 1242 1148 35 14 0 chr9 86243237 86243380 -37832792 - L1Md_F2 LINE L1 -5 6577 6433 3 1242 1525 258 136 69 chr9 86243380 86244300 -37831872 - L1MC1 LINE L1 -966 5180 4199 3 1242 835 290 82 46 chr9 86244301 86244691 -37831481 + L1MC1 LINE L1 5925 6328 -5 3 1242 229 340 42 11 chr9 86245016 86245111 -37831061 + MER47B DNA MER2_type 66 163 -255 3 1243 264 275 123 39 chr9 86245717 86245872 -37830300 - MLT1A1 LTR MaLR -204 204 37 3 1243 210 80 19 39 chr9 86246467 86246519 -37829653 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1243 290 345 177 29 chr9 86246852 86247061 -37829111 + Tigger5 DNA MER2_type 3 242 -2164 3 1243 609 229 206 6 chr9 86247172 86247352 -37828820 + B3 SINE B2 1 216 0 3 1243 543 254 64 23 chr9 86247366 86247539 -37828633 - L1MC4a LINE L1 -14 7868 7689 3 1243 519 202 113 10 chr9 86247640 86247827 -37828345 + L1MB8 LINE L1 5696 5897 -271 3 1243 243 88 0 0 chr9 86248332 86248366 -37827806 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1243 509 306 38 88 chr9 86248412 86248609 -37827563 - L1MC1 LINE L1 -69 6264 6082 3 1243 411 21 0 0 chr9 86248609 86248657 -37827515 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1243 509 306 38 88 chr9 86248657 86248699 -37827473 - L1MC1 LINE L1 -252 6081 6037 3 1243 1113 125 18 6 chr9 86249478 86249647 -37826525 - URR1B DNA MER1_type -54 171 1 3 1243 1595 238 92 87 chr9 86250190 86251373 -37824799 - RMER12 LTR ERVK -100 1304 1 3 1243 1059 168 141 48 chr9 86252931 86253137 -37823035 - URR1B DNA MER1_type 0 225 1 3 1243 186 135 71 71 chr9 86254214 86254270 -37821902 + L3 LINE CR1 2137 2192 -2297 3 1243 260 350 9 22 chr9 86255180 86255330 -37820842 - MIR3 SINE MIR -31 177 34 3 1243 892 233 165 12 chr9 86256188 86256436 -37819736 + B4A SINE B4 1 286 -6 3 1243 6675 161 48 48 chr9 86257063 86258418 -37817754 + Lx9 LINE L1 6289 7643 -1 3 1243 550 250 121 86 chr9 86258901 86259181 -37816991 + B4A SINE B4 3 292 0 3 1243 1395 89 21 21 chr9 86259426 86259620 -37816552 - B2_Mm2 SINE B2 0 195 2 3 1243 1810 210 87 57 chr9 86259915 86260421 -37815751 + RLTR11A2 LTR ERVK 7 527 0 3 1243 324 296 116 17 chr9 86261821 86261993 -37814179 + MIR SINE MIR 74 262 0 3 1243 385 330 9 9 chr9 86262064 86262177 -37813995 + B4 SINE B4 5 117 -175 3 1243 519 224 0 10 chr9 86262175 86262274 -37813898 - PB1D9 SINE Alu -21 99 2 3 1243 495 238 133 71 chr9 86262634 86262942 -37813230 - ORR1E LTR MaLR -24 335 9 3 1243 357 24 0 0 chr9 86264668 86264710 -37811462 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1243 777 168 35 40 chr9 86265527 86265701 -37810471 + URR1A DNA MER1_type 53 225 -1 3 1243 514 267 96 7 chr9 86266238 86266360 -37809812 + RSINE1 SINE B4 14 148 -17 3 1243 207 100 0 0 chr9 86266360 86266390 -37809782 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1243 514 267 96 7 chr9 86266390 86266403 -37809769 + RSINE1 SINE B4 149 161 -4 3 1243 249 355 137 11 chr9 86266747 86266929 -37809243 - Charlie15a DNA MER1_type 0 224 20 3 1243 384 197 39 26 chr9 86268072 86268150 -37808022 - ID4 SINE ID -4 79 1 3 1243 181 407 46 9 chr9 86268791 86268900 -37807272 - MIRb SINE MIR -145 123 11 3 1243 1165 184 14 9 chr9 86269202 86269421 -37806751 - URR1A DNA MER1_type 0 226 7 3 1243 432 0 0 0 chr9 86269612 86269660 -37806512 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 3 1243 1154 95 0 0 chr9 86269660 86269818 -37806354 - B2_Mm2 SINE B2 -37 158 1 3 1243 206 156 22 0 chr9 86269954 86269999 -37806173 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3 1243 202 250 0 35 chr9 86270633 86270691 -37805481 + GA-rich Low_complexity Low_complexity 1 56 0 3 1243 576 253 86 6 chr9 86271832 86271995 -37804177 + ID_B1 SINE B4 33 208 -16 4 1243 184 152 68 0 chr9 86272021 86272080 -37804092 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 4 1243 957 88 262 7 chr9 86272228 86272377 -37803795 + B2_Mm2 SINE B2 1 187 -8 4 1243 511 287 122 5 chr9 86272518 86272714 -37803458 + ID_B1 SINE B4 2 220 -4 4 1243 912 217 56 51 chr9 86272754 86272968 -37803204 + B3 SINE B2 2 216 0 4 1243 415 231 0 71 chr9 86273179 86273291 -37802881 - PB1D7 SINE Alu 0 120 17 4 1243 566 242 96 25 chr9 86273204 86273361 -37802811 - ID_B1 SINE B4 -44 180 13 4 1243 228 143 0 0 chr9 86274514 86274549 -37801623 - Lx6 LINE L1 -1448 6012 5978 4 1243 1221 42 78 6 chr9 86274598 86274764 -37801408 - MTB LTR MaLR -54 346 169 4 1243 20219 20 0 0 chr9 86274764 86277070 -37799102 + L1_Mm LINE L1 3227 5532 -351 4 1243 4742 167 123 28 chr9 86277091 86277399 -37798773 - RMER12 LTR ERVK -150 1172 836 4 1243 198 103 0 0 chr9 86277399 86277428 -37798744 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1243 4742 167 123 28 chr9 86277428 86277445 -37798727 - RMER12 LTR ERVK -487 835 778 4 1243 291 104 0 0 chr9 86277445 86277493 -37798679 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 4 1243 4803 182 121 27 chr9 86277493 86277875 -37798297 - RMER12 LTR ERVK -545 777 390 4 1243 2392 35 0 0 chr9 86277875 86278159 -37798013 - L1Md_A LINE L1 0 6582 6299 4 1243 4803 182 121 27 chr9 86278159 86278519 -37797653 - RMER12 LTR ERVK -933 389 4 4 1243 1008 153 5 21 chr9 86278519 86278712 -37797460 - Lx5 LINE L1 -1078 5972 5783 4 1243 1547 273 46 6 chr9 86278712 86279717 -37796455 + Lx5 LINE L1 6054 7008 -42 4 1243 3691 35 0 0 chr9 86279761 86280194 -37795978 + L1Md_T LINE L1 6150 6582 0 4 1243 252 158 0 0 chr9 86280224 86280281 -37795891 + A-rich Low_complexity Low_complexity 1 57 0 4 1243 3271 164 43 8 chr9 86280718 86281320 -37794852 + Lx4B LINE L1 6432 7054 -4 4 1243 1091 193 0 15 chr9 86281333 86281533 -37794639 + MTC LTR MaLR 217 413 -8 4 1243 812 335 54 8 chr9 86281586 86281845 -37794327 + B4 SINE B4 8 278 -14 4 1243 450 0 0 0 chr9 86281864 86281914 -37794258 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1243 305 280 9 6 chr9 86282967 86283050 -37793122 + B1F SINE Alu 36 119 -1 4 1243 225 0 0 0 chr9 86283227 86283252 -37792920 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1243 468 0 0 0 chr9 86283252 86283303 -37792869 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 4 1243 213 195 0 0 chr9 86283547 86283554 -37792618 + (TATG)n Simple_repeat Simple_repeat 2 8 0 4 1243 249 108 0 0 chr9 86283554 86283591 -37792581 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 4 1243 213 195 0 0 chr9 86283591 86283624 -37792548 + (TATG)n Simple_repeat Simple_repeat 1 33 0 4 1243 222 305 16 33 chr9 86283690 86283751 -37792421 - RSINE1 SINE B4 -102 63 4 4 1243 331 326 11 0 chr9 86283783 86283872 -37792300 - RSINE1 SINE B4 -72 93 4 4 1243 2414 115 41 14 chr9 86284957 86285326 -37790846 + MTC LTR MaLR 1 379 -42 4 1243 6205 148 56 40 chr9 86285344 86286386 -37789786 + MTC-int LTR MaLR 2 1042 -216 4 1243 243 0 0 0 chr9 86286386 86286413 -37789759 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1243 545 0 15 0 chr9 86286413 86286477 -37789695 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1243 6205 148 56 40 chr9 86286477 86286671 -37789501 + MTC-int LTR MaLR 1043 1257 -1 4 1243 2497 159 20 0 chr9 86286673 86287081 -37789091 + MTC LTR MaLR 3 418 -3 4 1243 261 0 0 0 chr9 86289127 86289156 -37787016 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1243 222 302 102 20 chr9 86289258 86289356 -37786816 - MIRb SINE MIR -57 211 106 4 1243 1180 220 114 18 chr9 86289456 86289790 -37786382 + MTE2b LTR MaLR 2 367 -12 4 1243 339 283 123 19 chr9 86290102 86290257 -37785915 - L1MC5 LINE L1 -54 7907 7737 4 1243 1145 269 105 5 chr9 86290661 86291042 -37785130 + MTD LTR MaLR 1 419 0 4 1243 554 256 0 60 chr9 86291246 86291379 -37784793 + RSINE1 SINE B4 2 126 -39 4 1243 24 53 0 0 chr9 86291385 86291423 -37784749 + AT_rich Low_complexity Low_complexity 1 38 0 4 1243 16508 126 167 6 chr9 86291572 86293023 -37783149 + Lx LINE L1 354 1903 -3980 4 1243 540 0 0 0 chr9 86293023 86293083 -37783089 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1243 16508 129 182 10 chr9 86293083 86296934 -37779238 + Lx LINE L1 1904 6652 -2 4 1243 1268 89 5 50 chr9 86297236 86297438 -37778734 + B2_Mm2 SINE B2 1 193 -2 4 1243 1201 55 0 0 chr9 86297495 86297641 -37778531 + B1_Mus2 SINE Alu 2 147 0 4 1243 2453 104 85 15 chr9 86297721 86298131 -37778041 + Lx2A LINE L1 6555 6993 -15 4 1243 243 88 0 0 chr9 86298133 86298167 -37778005 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1243 663 191 8 15 chr9 86298572 86298586 -37777586 - B1_Mur2 SINE Alu 0 149 137 4 1243 207 0 0 0 chr9 86298586 86298609 -37777563 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 4 1243 663 191 8 15 chr9 86298609 86298727 -37777445 - B1_Mur2 SINE Alu -13 136 18 4 1243 186 43 0 0 chr9 86299036 86299059 -37777113 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1243 459 267 111 15 chr9 86299652 86299850 -37776322 - MER58A DNA MER1_type -4 220 4 4 1243 937 287 178 28 chr9 86300214 86300709 -37775463 - MLT1F1 LTR MaLR 0 569 1 4 1243 21 36 0 0 chr9 86300750 86300778 -37775394 + AT_rich Low_complexity Low_complexity 1 28 0 4 1243 473 287 80 7 chr9 86300786 86300937 -37775235 - RSINE1 SINE B4 -2 163 2 4 1243 1138 57 11 33 chr9 86301813 86301996 -37774176 + (GGAGA)n Simple_repeat Simple_repeat 1 179 0 4 1243 354 45 0 0 chr9 86301996 86302040 -37774132 + (GGA)n Simple_repeat Simple_repeat 2 45 0 4 1243 26 30 0 0 chr9 86303698 86303731 -37772441 + AT_rich Low_complexity Low_complexity 1 33 0 4 1243 481 243 29 0 chr9 86304408 86304511 -37771661 + PB1D10 SINE Alu 6 111 -6 4 1243 765 103 0 0 chr9 86304511 86304628 -37771544 + (TA)n Simple_repeat Simple_repeat 1 117 0 4 1243 535 296 52 0 chr9 86304902 86305074 -37771098 + B3A SINE B2 1 181 -17 4 1243 477 225 179 83 chr9 86305268 86305520 -37770652 + RMER1B Other Other 293 568 -498 4 1243 1493 290 226 10 chr9 86305553 86306149 -37770023 + RMER1A Other Other 1 725 -305 4 1243 2967 149 30 62 chr9 86306202 86306801 -37769371 + RMER6C LTR ERVK 111 690 0 4 1243 1210 159 95 4 chr9 86306802 86307054 -37769118 + RMER1B Other Other 791 1065 -1 4 1243 539 324 7 0 chr9 86307866 86308014 -37768158 + RSINE1 SINE B4 3 151 -14 4 1243 31 26 0 0 chr9 86308036 86308074 -37768098 + AT_rich Low_complexity Low_complexity 1 38 0 4 1243 204 40 0 0 chr9 86308074 86308099 -37768073 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1243 400 179 13 13 chr9 86308104 86308183 -37767989 - RMER1A Other Other -870 160 82 4 1243 506 217 96 0 chr9 86308185 86308300 -37767872 - B3 SINE B2 -90 126 1 4 1243 863 260 60 52 chr9 86308432 86308680 -37767492 + B4A SINE B4 5 254 -38 4 1243 432 0 0 0 chr9 86308688 86308736 -37767436 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1243 2394 69 18 33 chr9 86309761 86310093 -37766079 - ORR1A2 LTR MaLR 0 327 1 4 1243 273 322 39 36 chr9 86311421 86311701 -37764471 + L1M3 LINE L1 5111 5391 -749 4 1243 1729 187 107 8 chr9 86311708 86312074 -37764098 + MTD LTR MaLR 1 402 -17 4 1243 603 293 78 5 chr9 86312587 86312779 -37763393 - MER20 DNA MER1_type 0 219 14 4 1243 324 0 0 0 chr9 86313528 86313564 -37762608 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 4 1243 366 344 107 100 chr9 86313585 86313866 -37762306 + B4 SINE B4 10 292 0 4 1243 379 216 72 0 chr9 86314028 86314125 -37762047 + PB1D10 SINE Alu 1 104 -13 4 1243 180 0 0 0 chr9 86314129 86314149 -37762023 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 1243 351 0 0 0 chr9 86314150 86314189 -37761983 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 4 1243 390 42 0 0 chr9 86314440 86314488 -37761684 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1243 771 69 0 0 chr9 86314488 86314590 -37761582 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 4 1243 621 256 44 0 chr9 86314759 86314896 -37761276 + RSINE1 SINE B4 1 143 -22 4 1243 227 31 31 0 chr9 86316683 86316715 -37759457 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1243 436 293 50 0 chr9 86317061 86317201 -37758971 - LTR16A1 LTR ERVL -307 149 3 4 1243 598 252 79 122 chr9 86317803 86318106 -37758066 + B4A SINE B4 3 292 0 4 1243 193 22 109 0 chr9 86318551 86318597 -37757575 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1243 1657 244 31 8 chr9 86319221 86319592 -37756580 + MTE2b LTR MaLR 1 370 0 4 1243 274 194 137 21 chr9 86319834 86319929 -37756243 - MTD LTR MaLR 0 419 314 4 1243 1530 142 124 15 chr9 86319929 86320291 -37755881 - MTC LTR MaLR 0 419 1 4 1243 1187 259 62 0 chr9 86320295 86320569 -37755603 - MTD LTR MaLR -128 291 1 4 1243 234 0 0 0 chr9 86321187 86321213 -37754959 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4 1243 1135 76 7 0 chr9 86321984 86322129 -37754043 + B1_Mus1 SINE Alu 2 147 -1 4 1243 367 239 5 128 chr9 86322705 86322892 -37753280 - L1MEg LINE L1 -4812 1272 1109 4 1243 502 314 76 55 chr9 86323335 86323665 -37752507 + ORR1E LTR MaLR 3 339 -20 4 1243 345 357 32 41 chr9 86324116 86324335 -37751837 - L1MEf LINE L1 -4567 1633 1417 4 1243 1102 88 0 0 chr9 86324622 86324769 -37751403 + B1_Mus1 SINE Alu 2 148 0 4 1243 522 161 0 0 chr9 86324769 86324862 -37751310 + A-rich Low_complexity Low_complexity 1 93 0 4 1243 235 277 39 53 chr9 86324865 86325071 -37751101 - L1MEf LINE L1 -5124 1076 874 4 1243 399 89 0 0 chr9 86325408 86325464 -37750708 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1243 484 286 89 15 chr9 86325480 86325615 -37750557 - RSINE1 SINE B4 -18 147 3 4 1243 455 242 178 0 chr9 86325758 86325915 -37750257 + Lx9 LINE L1 6639 6823 -821 4 1243 5538 81 0 1 chr9 86325929 86326695 -37749477 - L1_Mus1 LINE L1 -2 5881 5117 4 1243 5119 69 0 1 chr9 86326695 86327359 -37748813 + L1_Mus1 LINE L1 5905 6567 0 4 1243 838 181 12 0 chr9 86327375 86327541 -37748631 + Lx9 LINE L1 6808 6975 -669 4 1243 352 339 31 23 chr9 86328035 86328165 -37748007 + RSINE1 SINE B4 29 159 -6 5 1243 231 36 0 0 chr9 86328177 86328205 -37747967 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1243 958 199 103 16 chr9 86328209 86328403 -37747769 + B3 SINE B2 1 211 -5 5 1243 334 229 0 14 chr9 86329725 86329796 -37746376 + B1F SINE Alu 79 148 -1 5 1243 740 212 62 24 chr9 86329827 86330035 -37746137 + B3 SINE B2 1 216 0 5 1243 1122 43 0 0 chr9 86330762 86330902 -37745270 + (TG)n Simple_repeat Simple_repeat 1 140 0 5 1243 486 240 116 0 chr9 86330902 86331023 -37745149 - B3A SINE B2 -50 148 14 5 1243 332 320 44 68 chr9 86331517 86331688 -37744484 - PB1 SINE Alu -3 308 1 5 1243 207 162 0 0 chr9 86332958 86332995 -37743177 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1243 1675 31 0 0 chr9 86333613 86333805 -37742367 + B2_Mm1a SINE B2 2 193 0 5 1243 597 63 13 0 chr9 86334901 86334980 -37741192 - B1_Mus2 SINE Alu 0 147 68 5 1243 22 35 0 0 chr9 86335066 86335095 -37741077 + AT_rich Low_complexity Low_complexity 1 29 0 5 1243 1035 296 106 54 chr9 86335955 86336455 -37739717 - LTR87 LTR ERVL? -2 622 97 5 1243 300 356 37 42 chr9 86336505 86336719 -37739453 - MIRb SINE MIR -54 214 2 5 1243 224 77 0 25 chr9 86337327 86337367 -37738805 + (TTA)n Simple_repeat Simple_repeat 2 40 0 5 1243 201 74 0 0 chr9 86338355 86338382 -37737790 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1243 202 311 16 0 chr9 86338852 86338913 -37737259 - MIR3 SINE MIR -49 159 98 5 1243 739 235 53 0 chr9 86338933 86339103 -37737069 + B3A SINE B2 4 182 -16 5 1243 1429 77 0 25 chr9 86339610 86339809 -37736363 + B2_Mm2 SINE B2 2 195 0 5 1243 279 293 29 29 chr9 86340535 86340637 -37735535 + Tigger15a DNA TcMar 7 108 -607 5 1243 227 369 134 0 chr9 86340764 86340921 -37735251 - MIR SINE MIR -19 243 66 5 1243 22 0 0 0 chr9 86344594 86344616 -37731556 + AT_rich Low_complexity Low_complexity 1 22 0 5 1243 188 358 32 51 chr9 86344875 86345031 -37731141 + L2a LINE L2 3269 3421 -5 5 1243 271 243 0 0 chr9 86345147 86345217 -37730955 + L1MC1 LINE L1 6259 6328 -5 5 1243 236 279 0 29 chr9 86346021 86346091 -37730081 - MER58C DNA MER1_type -124 91 24 5 1243 393 295 124 6 chr9 86346693 86347004 -37729168 + L1MC4a LINE L1 6458 6813 -1229 5 1243 594 224 7 43 chr9 86347103 86347243 -37728929 - ID_B1 SINE B4 -7 217 83 5 1243 332 294 39 141 chr9 86347728 86348001 -37728171 - MTEb LTR MaLR 0 379 101 5 1243 245 250 13 0 chr9 86348381 86348457 -37727715 + L1M3 LINE L1 5545 5621 -547 5 1243 708 190 0 4 chr9 86348476 86348742 -37727430 + (TG)n Simple_repeat Simple_repeat 1 264 0 5 1243 515 231 103 28 chr9 86348749 86348973 -37727199 + L1MA4 LINE L1 5584 5889 -411 5 1243 4359 129 35 12 chr9 86349255 86349747 -37726425 + RMER6A LTR ERVK 1 489 -267 5 1243 414 39 0 0 chr9 86349747 86349799 -37726373 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1243 4359 129 35 12 chr9 86349799 86350038 -37726134 + RMER6A LTR ERVK 490 748 -8 5 1243 465 66 0 0 chr9 86350079 86350140 -37726032 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1243 552 234 78 0 chr9 86350181 86350309 -37725863 + B1_Mur3 SINE Alu 12 149 0 5 1243 27 0 0 0 chr9 86350348 86350375 -37725797 + AT_rich Low_complexity Low_complexity 1 27 0 5 1243 266 276 86 0 chr9 86350597 86350713 -37725459 + L1M5 LINE L1 4923 5048 -1098 5 1243 229 295 103 43 chr9 86350722 86350839 -37725333 + PB1 SINE Alu 1 124 -3 5 1243 445 269 315 3 chr9 86351263 86351581 -37724591 + L1M5 LINE L1 5272 5693 -471 5 1243 21 0 0 0 chr9 86351687 86351708 -37724464 + AT_rich Low_complexity Low_complexity 1 21 0 5 1243 29502 56 0 0 chr9 86351788 86355719 -37720453 + L1Md_F2 LINE L1 1656 5586 -297 5 1243 8183 48 1 0 chr9 86355719 86356714 -37719458 + L1Md_F2 LINE L1 5587 6582 0 5 1243 458 239 34 17 chr9 86356830 86356949 -37719223 + B1_Mur1 SINE Alu 29 149 0 5 1243 236 309 105 8 chr9 86356854 86356978 -37719194 + MT2B2 LTR ERVL 206 341 -243 5 1243 938 197 79 146 chr9 86357009 86357453 -37718719 + MT2B2 LTR ERVL 20 584 0 5 1243 2186 170 37 12 chr9 86359269 86359679 -37716493 - MTC LTR MaLR 0 421 2 5 1243 230 314 32 95 chr9 86359758 86359853 -37716319 + MT2B2 LTR ERVL 153 241 -343 5 1243 551 271 62 0 chr9 86359780 86359909 -37716263 + B1F1 SINE Alu 11 147 -2 5 1243 416 253 178 46 chr9 86360067 86360241 -37715931 + B3A SINE B2 2 198 0 5 1243 270 81 0 0 chr9 86361530 86361567 -37714605 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1243 244 319 0 0 chr9 86362409 86362478 -37713694 - ID4 SINE ID -14 69 1 5 1243 267 31 0 0 chr9 86362608 86362640 -37713532 + (TTTCC)n Simple_repeat Simple_repeat 3 34 0 5 1243 216 0 103 0 chr9 86362640 86362678 -37713494 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1243 1083 80 0 0 chr9 86362681 86362818 -37713354 - B1_Mm SINE Alu -10 137 1 5 1243 281 241 17 0 chr9 86362845 86362903 -37713269 + ID4_ SINE ID 22 80 -3 5 1243 704 221 73 0 chr9 86363924 86364060 -37712112 - B1_Mus2 SINE Alu -1 146 1 5 1243 21 57 0 0 chr9 86364776 86364811 -37711361 + AT_rich Low_complexity Low_complexity 1 35 0 5 1243 533 274 90 43 chr9 86364853 86365086 -37711086 - MER113 DNA MER1_type -179 342 99 5 1243 863 123 13 52 chr9 86365279 86365433 -37710739 + B1_Mus1 SINE Alu 1 148 0 5 1243 189 209 0 23 chr9 86366576 86366620 -37709552 - L4 LINE RTE -325 1704 1662 5 1243 919 257 133 41 chr9 86367313 86367658 -37708514 - MTEb LTR MaLR 0 379 3 5 1243 520 332 58 78 chr9 86367811 86367932 -37708240 - MLT1F LTR MaLR -140 408 291 5 1243 1277 89 10 35 chr9 86367932 86368129 -37708043 - B2_Mm2 SINE B2 -3 192 1 5 1243 520 332 58 78 chr9 86368129 86368172 -37708000 - MLT1F LTR MaLR -258 290 253 5 1243 796 198 54 41 chr9 86368172 86368393 -37707779 - URR1B DNA MER1_type -1 224 1 5 1243 520 332 58 78 chr9 86368393 86368485 -37707687 - MLT1F LTR MaLR -296 252 157 5 1243 206 232 111 42 chr9 86369252 86369324 -37706848 - L2c LINE L2 -221 3166 3090 5 1243 421 265 104 52 chr9 86369362 86369688 -37706484 + L1MB2 LINE L1 4721 5063 -1077 5 1243 447 251 142 40 chr9 86369806 86370080 -37706092 + L1MB2 LINE L1 5302 5603 -580 5 1243 487 297 53 42 chr9 86370091 86370281 -37705891 + B4A SINE B4 24 215 -77 5 1243 1024 273 81 26 chr9 86370360 86370819 -37705353 + L1MB2 LINE L1 5657 6140 -31 5 1243 201 310 74 66 chr9 86372158 86372279 -37703893 - L2 LINE L2 -1480 1939 1818 5 1243 260 261 43 0 chr9 86372710 86372779 -37703393 + ID4_ SINE ID 2 73 -10 5 1243 191 88 0 29 chr9 86372779 86372814 -37703358 + (CACCC)n Simple_repeat Simple_repeat 2 35 0 5 1243 257 340 47 12 chr9 86373171 86373290 -37702882 - MIRb SINE MIR -80 196 80 5 1243 522 164 206 32 chr9 86373423 86373549 -37702623 - B1_Mur1 SINE Alu -1 148 1 5 1243 340 303 55 0 chr9 86373697 86373806 -37702366 + MER5C1 DNA MER1_type 46 160 -103 5 1243 528 250 107 11 chr9 86374191 86374369 -37701803 - B3A SINE B2 0 198 4 5 1243 326 294 98 82 chr9 86374836 86374994 -37701178 - B4A SINE B4 -42 250 81 5 1243 732 328 61 15 chr9 86375028 86375291 -37700881 - B4A SINE B4 -2 290 16 5 1243 369 0 0 0 chr9 86375309 86375350 -37700822 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 1243 1156 58 0 0 chr9 86375350 86375488 -37700684 - B1_Mm SINE Alu -9 138 1 5 1243 392 125 10 30 chr9 86375494 86375593 -37700579 - Lx4A LINE L1 -1 7057 6961 5 1243 421 244 47 39 chr9 86375593 86375721 -37700451 - B4 SINE B4 -160 132 4 5 1243 468 229 95 0 chr9 86376317 86376422 -37699750 + PB1 SINE Alu 11 125 -2 5 1244 1222 57 61 22 chr9 86376676 86376856 -37699316 - B2_Mm2 SINE B2 -8 187 1 5 1244 537 278 68 8 chr9 86376866 86377207 -37698965 - L1M4 LINE L1 -824 5322 4965 5 1244 613 316 134 17 chr9 86377431 86377840 -37698332 - MLT1F LTR MaLR -2 567 93 5 1244 2369 120 0 3 chr9 86378020 86378378 -37697794 - L1_Mm LINE L1 -51 5832 5476 5 1244 1213 111 152 22 chr9 86378380 86378610 -37697562 + Lx2 LINE L1 6736 6995 -2 5 1244 246 276 17 0 chr9 86379488 86379546 -37696626 - L4 LINE RTE -181 1848 1790 5 1244 258 32 0 0 chr9 86380481 86380512 -37695660 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1244 27 100 0 0 chr9 86380729 86380819 -37695353 + AT_rich Low_complexity Low_complexity 1 90 0 5 1244 25 51 0 0 chr9 86381049 86381088 -37695084 + AT_rich Low_complexity Low_complexity 1 39 0 5 1244 637 230 29 22 chr9 86381088 86381226 -37694946 + B1_Mur1 SINE Alu 1 139 -10 5 1244 194 0 39 0 chr9 86381805 86381831 -37694341 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1244 513 206 88 0 chr9 86382714 86382816 -37693356 - B1_Mur2 SINE Alu -9 140 30 5 1244 884 244 38 28 chr9 86383485 86383696 -37692476 + B3 SINE B2 1 213 -3 5 1244 991 230 15 0 chr9 86383711 86383915 -37692257 + B3 SINE B2 1 207 -9 5 1244 241 222 0 45 chr9 86384652 86384718 -37691454 - RSINE1 SINE B4 -79 86 24 5 1244 365 251 150 14 chr9 86385298 86385439 -37690733 - MIRc SINE MIR -85 183 29 5 1244 1236 78 44 6 chr9 86386224 86386405 -37689767 - B2_Mm2 SINE B2 -5 190 3 5 1244 29 0 0 0 chr9 86386547 86386576 -37689596 + AT_rich Low_complexity Low_complexity 1 29 0 5 1244 4244 129 23 9 chr9 86386607 86387456 -37688716 - Lx2B LINE L1 -617 6383 5514 5 1244 538 360 81 18 chr9 86387459 86387852 -37688320 - L1ME1 LINE L1 -93 6086 5669 5 1244 295 306 0 107 chr9 86388594 86388715 -37687457 + MT2B LTR ERVL 149 256 -345 5 1244 831 185 15 0 chr9 86388621 86388756 -37687416 + B1_Mur2 SINE Alu 8 144 -5 6 1244 207 0 0 0 chr9 86389115 86389138 -37687034 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1244 1565 88 21 9 chr9 86389504 86389767 -37686405 - L1_Mus2 LINE L1 -61 6593 6280 6 1244 296 280 13 39 chr9 86389836 86389914 -37686258 + PB1 SINE Alu 1 76 -51 6 1244 241 100 283 0 chr9 86389936 86389996 -37686176 + ID4_ SINE ID 5 81 -2 6 1244 603 297 150 3 chr9 86390522 86390816 -37685356 - Charlie1a DNA MER1_type -395 1060 724 6 1244 374 264 117 9 chr9 86390832 86390943 -37685229 - MTEa LTR MaLR -12 367 245 6 1244 364 235 175 36 chr9 86391113 86391250 -37684922 - RSINE1 SINE B4 -8 157 2 6 1244 1051 286 35 8 chr9 86391623 86391992 -37684180 + Lx9 LINE L1 6953 7425 -219 6 1244 195 42 0 0 chr9 86391992 86392016 -37684156 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 6 1244 835 316 59 24 chr9 86392016 86392105 -37684067 + Lx9 LINE L1 7330 7425 -48 6 1244 247 292 56 0 chr9 86392397 86392486 -37683686 - Charlie1a DNA MER1_type -1041 414 321 6 1244 216 232 143 0 chr9 86392583 86392639 -37683533 - ID4_ SINE ID -16 67 4 6 1244 451 243 161 32 chr9 86393078 86393363 -37682809 - Lx8 LINE L1 0 7473 7152 6 1244 436 276 45 84 chr9 86393496 86393650 -37682522 - RSINE1 SINE B4 0 165 18 6 1244 732 246 22 22 chr9 86394631 86394814 -37681358 + B3A SINE B2 4 186 -12 6 1244 210 143 0 0 chr9 86394814 86394849 -37681323 + (TGG)n Simple_repeat Simple_repeat 1 35 0 6 1244 399 278 93 0 chr9 86396019 86396116 -37680056 - PB1D10 SINE Alu -11 106 1 6 1244 345 317 67 0 chr9 86396316 86396420 -37679752 + PB1D7 SINE Alu 3 113 -7 6 1244 184 321 35 12 chr9 86397542 86397627 -37678545 + L2 LINE L2 833 919 -2500 6 1244 616 290 6 31 chr9 86398173 86398333 -37677839 + RSINE1 SINE B4 10 165 0 6 1244 186 118 0 0 chr9 86398594 86398628 -37677544 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1244 1191 75 0 0 chr9 86398630 86398777 -37677395 - B1_Mus2 SINE Alu 0 147 1 6 1244 225 302 42 102 chr9 86399399 86399517 -37676655 + PB1D10 SINE Alu 1 111 -6 6 1244 775 279 96 48 chr9 86400668 86400939 -37675233 - B4A SINE B4 -7 285 2 6 1244 470 252 196 33 chr9 86401507 86401782 -37674390 - Charlie5 DNA MER1_type -40 2584 2265 6 1244 21 0 0 0 chr9 86401806 86401827 -37674345 + AT_rich Low_complexity Low_complexity 1 21 0 6 1244 452 324 74 0 chr9 86402184 86402332 -37673840 + RSINE1 SINE B4 3 161 -4 6 1244 273 238 12 70 chr9 86403729 86403815 -37672357 + MIRc SINE MIR 73 153 -115 6 1244 396 324 260 26 chr9 86403956 86404404 -37671768 - L2c LINE L2 -166 3221 2669 6 1244 784 261 176 40 chr9 86404573 86405094 -37671078 + Tigger7 DNA MER2_type 2157 2491 0 6 1244 414 0 0 0 chr9 86406880 86406926 -37669246 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1244 469 211 0 53 chr9 86406927 86407022 -37669150 - RSINE1 SINE B4 -72 93 4 6 1244 332 250 12 0 chr9 86408254 86408334 -37667838 + ID4 SINE ID 2 82 -1 6 1244 23 68 0 0 chr9 86408369 86408413 -37667759 + AT_rich Low_complexity Low_complexity 1 44 0 6 1244 771 277 10 0 chr9 86408528 86408730 -37667442 + B3 SINE B2 1 204 -12 6 1244 447 52 0 0 chr9 86409024 86409082 -37667090 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1244 313 198 333 0 chr9 86409509 86409605 -37666567 - MTD LTR MaLR -84 335 208 6 1244 222 37 0 0 chr9 86409633 86409660 -37666512 + (CTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1244 487 211 53 0 chr9 86409701 86409815 -37666357 - PB1D9 SINE Alu 0 120 1 6 1244 1111 75 7 7 chr9 86409854 86410001 -37666171 + B1_Mus2 SINE Alu 1 147 0 6 1244 234 0 0 0 chr9 86410002 86410028 -37666144 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1244 571 242 119 13 chr9 86410030 86410189 -37665983 - MTD LTR MaLR -241 178 3 6 1244 956 89 89 0 chr9 86410272 86410407 -37665765 - B1_Mus2 SINE Alu 0 147 1 6 1244 262 257 13 26 chr9 86410867 86410943 -37665229 - L2a LINE L2 -1 3425 3351 6 1244 192 214 95 0 chr9 86412368 86412410 -37663762 + MIRb SINE MIR 132 177 -91 6 1244 247 265 59 0 chr9 86415625 86415693 -37660479 + tRNA-Ala-GCY_ tRNA tRNA 2 73 -2 6 1244 239 235 68 48 chr9 86417009 86417112 -37659060 - L1ME1 LINE L1 -233 5946 5842 6 1244 398 297 108 8 chr9 86417232 86417361 -37658811 + B1F2 SINE Alu 2 143 -6 6 1244 324 251 96 50 chr9 86417582 86417714 -37658458 - PB1D10 SINE Alu 0 149 5 6 1244 312 218 38 25 chr9 86418281 86418361 -37657811 + ID4 SINE ID 3 83 0 6 1244 216 97 0 0 chr9 86418759 86418790 -37657382 + (TATG)n Simple_repeat Simple_repeat 2 32 0 6 1244 441 287 138 55 chr9 86418928 86419219 -37656953 + HAL1 LINE L1 1147 1461 -1046 6 1244 465 312 6 12 chr9 86419989 86420151 -37656021 - RSINE1 SINE B4 -4 161 1 6 1244 25 0 0 0 chr9 86420186 86420211 -37655961 + AT_rich Low_complexity Low_complexity 1 25 0 6 1244 412 232 0 12 chr9 86421580 86421663 -37654509 - ID4 SINE ID -1 82 1 6 1244 30 27 0 0 chr9 86422026 86422063 -37654109 + AT_rich Low_complexity Low_complexity 1 37 0 6 1244 986 190 11 43 chr9 86422120 86422307 -37653865 + B3A SINE B2 2 182 -16 6 1244 2936 38 3 0 chr9 86422360 86422705 -37653467 - ORR1A0 LTR MaLR 0 346 1 6 1244 13846 54 12 3 chr9 86422705 86424480 -37651692 - ORR1A0-int LTR MaLR 0 1792 1 6 1244 3087 23 0 0 chr9 86424480 86424826 -37651346 - ORR1A0 LTR MaLR 0 346 1 6 1244 352 283 192 0 chr9 86425753 86425873 -37650299 + B1_Mur1 SINE Alu 2 144 -5 6 1244 438 256 62 88 chr9 86426063 86426256 -37649916 + MT2B LTR ERVL 77 264 -337 6 1244 959 24 47 16 chr9 86426164 86426293 -37649879 + B1_Mus1 SINE Alu 16 148 0 6 1244 270 280 102 9 chr9 86426731 86426839 -37649333 - RMER12 LTR ERVK -459 863 746 6 1244 269 338 36 85 chr9 86427677 86427842 -37648330 + B4A SINE B4 2 158 -134 6 1244 249 274 40 27 chr9 86427861 86427936 -37648236 + RSINE1 SINE B4 78 153 -12 6 1244 5619 70 69 3 chr9 86428186 86428943 -37647229 + L1_Mus1 LINE L1 5761 6567 0 6 1244 571 273 114 6 chr9 86428997 86429163 -37647009 + MIR SINE MIR 44 227 -35 6 1244 239 248 39 67 chr9 86429325 86429429 -37646743 - L1M5 LINE L1 -400 5764 5664 6 1244 243 88 0 0 chr9 86429953 86429987 -37646185 + (TTA)n Simple_repeat Simple_repeat 1 34 0 6 1244 453 298 106 49 chr9 86430339 86430378 -37645794 - B4A SINE B4 -12 280 249 6 1244 1324 80 6 0 chr9 86430378 86430553 -37645619 - B2_Mm2 SINE B2 -19 176 1 6 1244 453 298 106 49 chr9 86430553 86430778 -37645394 - B4A SINE B4 -44 248 1 6 1244 797 143 14 7 chr9 86430970 86431111 -37645061 - B1_Mus2 SINE Alu -1 146 5 6 1244 785 255 267 20 chr9 86431141 86431934 -37644238 - L1M2 LINE L1 -746 5397 4409 6 1244 376 268 16 10 chr9 86432178 86432330 -37643842 - L1MA4 LINE L1 -382 5918 5766 6 1244 5464 44 0 0 chr9 86432330 86432989 -37643183 - L1Md_T LINE L1 0 6582 5924 6 1244 7388 14 0 4 chr9 86432989 86433890 -37642282 - L1_Mm LINE L1 -1324 4559 3663 6 1244 5054 112 16 8 chr9 86433882 86435077 -37641095 - Lx LINE L1 -301 6353 5152 6 1244 896 179 0 0 chr9 86435074 86435247 -37640925 + L1_Mm LINE L1 4855 5027 -856 6 1244 360 283 88 34 chr9 86435247 86435452 -37640720 + RMER5 LTR ERV1 287 502 -32 6 1244 237 300 29 0 chr9 86437473 86437543 -37638629 - ID4 SINE ID -10 73 2 6 1244 262 252 42 93 chr9 86437551 86437669 -37638503 - HERVL40-int LTR ERVL -1607 3923 3812 6 1244 394 143 0 52 chr9 86437692 86437788 -37638384 - Lx3C LINE L1 -4 6972 6882 6 1244 180 0 0 0 chr9 86437793 86437813 -37638359 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 1244 387 0 0 0 chr9 86437813 86437855 -37638317 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1244 2533 138 2 2 chr9 86437860 86438274 -37637898 - Lx3C LINE L1 -170 6806 6393 6 1244 21 0 0 0 chr9 86438313 86438334 -37637838 + AT_rich Low_complexity Low_complexity 1 21 0 6 1244 181 366 66 60 chr9 86438405 86438556 -37637616 - L2a LINE L2 -313 3113 2962 6 1244 282 400 22 22 chr9 86439464 86439643 -37636529 - MT2A LTR ERVL -71 462 284 6 1244 378 0 0 0 chr9 86440147 86440189 -37635983 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1244 318 250 11 22 chr9 86440692 86440782 -37635390 - RLTR42-int LTR ERVK -4200 1322 1234 6 1244 265 277 41 82 chr9 86441366 86441389 -37634783 - B1F1 SINE Alu -15 134 113 6 1244 198 0 0 0 chr9 86441389 86441411 -37634761 + (CTTG)n Simple_repeat Simple_repeat 1 22 0 6 1244 322 282 36 73 chr9 86441411 86441522 -37634650 - PB1D10 SINE Alu -37 112 6 6 1244 688 191 256 0 chr9 86442538 86442706 -37633466 + B3 SINE B2 1 211 -5 6 1244 289 193 106 0 chr9 86442986 86443064 -37633108 + B4 SINE B4 11 96 -196 6 1244 781 236 19 6 chr9 86443067 86443225 -37632947 + B3 SINE B2 4 163 -53 6 1244 468 0 0 0 chr9 86443225 86443277 -37632895 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1244 552 312 37 18 chr9 86443312 86443475 -37632697 + B4 SINE B4 82 247 -45 6 1244 182 324 27 13 chr9 86444270 86444345 -37631827 - L2 LINE L2 -556 2863 2788 6 1244 219 234 0 0 chr9 86444437 86444484 -37631688 - ID4_ SINE ID -10 73 27 6 1244 891 139 7 27 chr9 86444946 86445094 -37631078 - B1_Mur4 SINE Alu -5 145 1 6 1244 33 56 0 0 chr9 86445640 86445694 -37630478 + AT_rich Low_complexity Low_complexity 1 54 0 6 1244 197 125 0 40 chr9 86445850 86445866 -37630306 + A-rich Low_complexity Low_complexity 1 16 0 6 1244 1152 55 14 0 chr9 86445866 86446011 -37630161 + B1_Mus2 SINE Alu 1 147 0 6 1244 197 125 0 40 chr9 86446011 86446044 -37630128 + A-rich Low_complexity Low_complexity 17 47 0 6 1244 718 188 58 0 chr9 86450153 86450291 -37625881 - B1_Mus1 SINE Alu 0 148 3 7 1244 449 232 20 0 chr9 86452504 86452603 -37623569 - B4 SINE B4 -74 218 118 7 1244 217 75 35 70 chr9 86452679 86452711 -37623461 + T-rich Low_complexity Low_complexity 26 56 0 7 1244 1078 44 22 7 chr9 86452711 86452849 -37623323 - B1_Mus1 SINE Alu -7 141 2 7 1244 217 75 35 70 chr9 86452849 86452873 -37623299 + T-rich Low_complexity Low_complexity 2 25 0 7 1244 427 303 85 55 chr9 86453311 86453510 -37622662 - MER58A DNA MER1_type -14 210 6 7 1244 1170 54 0 26 chr9 86453547 86453698 -37622474 + B1_Mus2 SINE Alu 1 147 0 7 1244 403 171 278 35 chr9 86453720 86453835 -37622337 + B1_Mus2 SINE Alu 5 147 0 7 1244 254 306 94 19 chr9 86454921 86455081 -37621091 + MTEa LTR MaLR 195 366 -13 7 1244 1142 68 7 0 chr9 86456491 86456637 -37619535 + B1_Mus1 SINE Alu 2 148 0 7 1244 270 162 198 12 chr9 86456736 86456817 -37619355 - PB1D9 SINE Alu -13 107 12 7 1244 848 86 8 45 chr9 86457090 86457224 -37618948 - B1_Mus2 SINE Alu 0 147 19 7 1244 207 0 0 0 chr9 86458528 86458551 -37617621 + (CATG)n Simple_repeat Simple_repeat 2 24 0 7 1244 1106 83 14 0 chr9 86460171 86460316 -37615856 - B1_Mus2 SINE Alu 0 147 1 7 1244 2003 79 31 0 chr9 86460608 86460898 -37615274 + ORR1A2 LTR MaLR 1 299 -28 7 1244 243 0 0 0 chr9 86461303 86461330 -37614842 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1244 216 287 65 56 chr9 86461459 86461558 -37614614 + B1F SINE Alu 42 142 -7 7 1244 353 277 0 0 chr9 86461558 86461641 -37614531 + ID4_ SINE ID 1 83 0 7 1244 464 227 43 80 chr9 86461684 86461847 -37614325 + B3A SINE B2 40 196 -2 7 1244 752 163 0 8 chr9 86463328 86463458 -37612714 + B1_Mur3 SINE Alu 1 129 -20 7 1244 741 102 0 0 chr9 86463476 86463584 -37612588 + (GGGA)n Simple_repeat Simple_repeat 1 108 0 7 1244 1004 45 0 0 chr9 86463594 86463727 -37612445 + B1_Mus1 SINE Alu 16 148 0 7 1244 22 35 0 0 chr9 86464917 86464946 -37611226 + AT_rich Low_complexity Low_complexity 1 29 0 7 1244 457 178 312 13 chr9 86466713 86466867 -37609305 - B3 SINE B2 -2 214 15 7 1244 840 164 128 31 chr9 86468531 86468726 -37607446 + B3 SINE B2 3 216 0 7 1244 202 189 0 0 chr9 86469261 86469298 -37606874 + G-rich Low_complexity Low_complexity 1 37 0 7 1244 941 210 5 25 chr9 86469400 86469600 -37606572 + B3 SINE B2 1 196 -20 7 1244 2728 28 65 0 chr9 86469600 86469925 -37606247 - ORR1A0 LTR MaLR 0 346 1 7 1244 409 207 0 44 chr9 86471313 86471404 -37604768 - RMER12 LTR ERVK -6 1316 1230 7 1244 674 147 11 32 chr9 86471752 86471891 -37604281 - B1_Mus2 SINE Alu 0 147 13 7 1244 243 255 0 0 chr9 86471891 86471938 -37604234 - PB1D10 SINE Alu -8 109 63 7 1244 325 194 105 53 chr9 86472557 86472633 -37603539 - ID4_ SINE ID -3 80 1 7 1244 513 254 56 6 chr9 86472836 86473014 -37603158 - Lx8 LINE L1 -146 7327 7141 7 1244 643 210 207 17 chr9 86473647 86473826 -37602346 + B3 SINE B2 2 214 -2 7 1244 22 35 0 0 chr9 86473827 86473856 -37602316 + AT_rich Low_complexity Low_complexity 1 29 0 7 1244 285 190 207 0 chr9 86474187 86474303 -37601869 + MER33 DNA MER1_type 148 287 -37 7 1244 845 206 34 24 chr9 86474655 86474864 -37601308 + B3 SINE B2 6 216 0 7 1244 26 0 0 0 chr9 86474866 86474892 -37601280 + AT_rich Low_complexity Low_complexity 1 26 0 7 1244 815 180 351 25 chr9 86478148 86478427 -37597745 + ORR1D1 LTR MaLR 1 370 -4 7 1244 2285 127 56 46 chr9 86478535 86478750 -37597422 + MTC LTR MaLR 1 206 -215 7 1244 1151 83 0 0 chr9 86478750 86478895 -37597277 + B1_Mus1 SINE Alu 1 145 -3 7 1244 2285 127 56 46 chr9 86478895 86479093 -37597079 + MTC LTR MaLR 207 418 -3 7 1244 376 238 56 77 chr9 86479176 86479372 -37596800 + B3A SINE B2 4 195 0 7 1244 628 82 8 84 chr9 86479704 86479731 -37596441 + URR1B DNA MER1_type 116 136 -89 7 1244 979 80 58 0 chr9 86479731 86479869 -37596303 + B1_Mus2 SINE Alu 1 146 -1 7 1244 628 82 8 84 chr9 86479869 86479960 -37596212 + URR1B DNA MER1_type 137 225 0 7 1244 2632 39 0 0 chr9 86481238 86481576 -37594596 + ORR1A1 LTR MaLR 1 338 -8 7 1244 480 35 0 0 chr9 86481640 86481698 -37594474 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1244 234 208 151 0 chr9 86481698 86481751 -37594421 - ID4 SINE ID -21 62 2 7 1244 492 218 20 0 chr9 86481926 86482027 -37594145 - B1_Mur1 SINE Alu -5 144 42 7 1244 280 314 0 0 chr9 86482132 86482250 -37593922 + GA-rich Low_complexity Low_complexity 2 119 0 7 1244 270 106 0 0 chr9 86482359 86482406 -37593766 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 7 1244 531 0 0 0 chr9 86482409 86482468 -37593704 + (GGGAA)n Simple_repeat Simple_repeat 1 59 0 7 1244 282 87 0 0 chr9 86482507 86482553 -37593619 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1244 3089 151 152 7 chr9 86482967 86483559 -37592613 + RLTR33 LTR ERVK 1 678 0 7 1244 1246 210 80 23 chr9 86483559 86483910 -37592262 + ORR1C2 LTR MaLR 14 384 0 7 1244 634 210 28 21 chr9 86484236 86484377 -37591795 + B1_Mur1 SINE Alu 1 142 -7 7 1244 629 249 105 0 chr9 86484392 86484573 -37591599 + B3 SINE B2 1 200 -16 7 1244 358 270 162 101 chr9 86485048 86485246 -37590926 + B4A SINE B4 83 292 0 7 1244 633 90 0 0 chr9 86485395 86485484 -37590688 + (TA)n Simple_repeat Simple_repeat 2 90 0 7 1244 867 144 116 47 chr9 86485487 86485677 -37590495 - B3 SINE B2 -13 203 1 7 1244 584 293 26 11 chr9 86486057 86486247 -37589925 + B4A SINE B4 44 236 -56 7 1244 465 19 0 0 chr9 86486267 86486321 -37589851 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1244 429 258 30 68 chr9 86486503 86486636 -37589536 - B1F SINE Alu -21 128 1 7 1244 474 275 0 0 chr9 86486690 86486799 -37589373 - B1_Mur1 SINE Alu -18 131 23 7 1244 255 125 0 0 chr9 86487026 86487066 -37589106 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1244 478 303 35 14 chr9 86487476 86487620 -37588552 - RSINE1 SINE B4 -17 148 2 7 1244 906 16 83 34 chr9 86490509 86490773 -37585399 + (TCCTG)n Simple_repeat Simple_repeat 1 276 0 7 1244 785 25 126 0 chr9 86490785 86490944 -37585228 + (TCCTG)n Simple_repeat Simple_repeat 2 180 0 7 1244 1042 8 72 24 chr9 86490956 86491208 -37584964 + (TCCTG)n Simple_repeat Simple_repeat 1 264 0 7 1244 237 251 11 66 chr9 86491339 86491522 -37584650 + (CA)n Simple_repeat Simple_repeat 1 173 0 7 1244 260 143 14 41 chr9 86491896 86491969 -37584203 + CT-rich Low_complexity Low_complexity 2 72 0 7 1244 756 219 14 0 chr9 86492577 86492723 -37583449 - B1_Mur3 SINE Alu -1 148 1 7 1244 459 0 0 0 chr9 86492995 86493046 -37583126 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1244 537 288 134 69 chr9 86493099 86493360 -37582812 - B4 SINE B4 -12 280 3 7 1244 242 245 170 0 chr9 86494648 86494742 -37581430 - Tigger5 DNA MER2_type -32 2374 2265 7 1244 1191 56 0 0 chr9 86495126 86495269 -37580903 + B1_Mus1 SINE Alu 1 143 -5 7 1244 198 0 0 0 chr9 86495275 86495297 -37580875 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 7 1244 215 146 24 0 chr9 86495959 86496000 -37580172 + (CTTA)n Simple_repeat Simple_repeat 1 42 0 7 1244 448 30 30 0 chr9 86497034 86497100 -37579072 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 7 1244 931 25 0 0 chr9 86497108 86497227 -37578945 - B1_Mus2 SINE Alu 0 147 29 7 1244 32 0 0 0 chr9 86498380 86498412 -37577760 + AT_rich Low_complexity Low_complexity 1 32 0 7 1244 508 297 7 61 chr9 86498458 86498605 -37577567 - RSINE1 SINE B4 -24 141 3 7 1244 199 246 11 45 chr9 86500066 86500245 -37575927 + (TATG)n Simple_repeat Simple_repeat 4 176 0 1 1244 215 294 0 0 chr9 86500363 86500414 -37575758 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1244 432 37 0 0 chr9 86502061 86502115 -37574057 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1244 190 337 81 11 chr9 86502352 86502526 -37573646 + L2 LINE L2 2308 2493 -926 4 1244 182 309 43 14 chr9 86502641 86502710 -37573462 + L2 LINE L2 2682 2752 -667 4 1244 1170 74 0 0 chr9 86502729 86502877 -37573295 - B1_Mus1 SINE Alu 0 148 1 5 1244 207 0 0 0 chr9 86503093 86503116 -37573056 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 6 1244 877 148 7 0 chr9 86503593 86503735 -37572437 + B1_Mur1 SINE Alu 2 144 -5 7 1244 338 305 12 0 chr9 86503904 86503986 -37572186 + ID4 SINE ID 1 83 0 8 1244 318 106 0 0 chr9 86504937 86504984 -37571188 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 9 1244 242 236 27 40 chr9 86504997 86505072 -37571100 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1 1244 915 312 29 18 chr9 86505075 86505349 -37570823 - B4 SINE B4 -13 279 3 1 155 478 260 28 19 chr9 86507508 86507614 -37568558 - PB1D10 SINE Alu -8 109 3 1 1245 366 215 93 41 chr9 86507614 86507653 -37568519 - B4A SINE B4 -205 87 44 1 1245 238 333 49 0 chr9 86508089 86508170 -37568002 + B4 SINE B4 2 86 -206 1 1245 24 0 0 0 chr9 86508861 86508885 -37567287 + AT_rich Low_complexity Low_complexity 1 24 0 1 1245 309 311 117 41 chr9 86508930 86509101 -37567071 - B3 SINE B2 -9 184 1 1 1245 208 189 13 13 chr9 86509293 86509368 -37566804 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1245 25 51 0 0 chr9 86512625 86512664 -37563508 + AT_rich Low_complexity Low_complexity 1 39 0 1 1245 550 289 146 15 chr9 86514243 86514517 -37561655 - MLT1A0 LTR MaLR -18 347 38 1 1245 1129 273 26 115 chr9 86515660 86516089 -37560083 + MTD LTR MaLR 1 389 -30 2 1245 225 0 0 0 chr9 86516089 86516114 -37560058 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2 1245 1129 273 26 115 chr9 86516114 86516144 -37560028 + MTD LTR MaLR 390 419 0 2 1245 280 314 128 44 chr9 86516734 86516937 -37559235 + MIRb SINE MIR 31 250 -18 2 1245 1036 31 0 0 chr9 86516982 86517109 -37559063 + B1_Mus1 SINE Alu 22 148 0 2 1245 334 366 8 0 chr9 86518514 86518637 -37557535 - MIRb SINE MIR -23 245 122 2 1245 211 270 63 0 chr9 86518695 86518758 -37557414 - ID2 SINE ID -12 71 5 2 1245 237 315 0 0 chr9 86519617 86519671 -37556501 + RSINE1 SINE B4 99 152 -13 2 1245 241 280 20 10 chr9 86521346 86521447 -37554725 - L1M5 LINE L1 -461 5779 5678 2 1245 412 302 38 0 chr9 86521736 86521842 -37554330 - ID_B1 SINE B4 -2 222 113 2 1245 218 346 75 68 chr9 86521842 86521878 -37554294 - B1_Mur1 SINE Alu -1 144 2 2 1245 309 109 0 0 chr9 86522126 86522181 -37553991 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 3 1245 689 121 7 157 chr9 86522242 86522389 -37553783 - B1_Mus1 SINE Alu -2 146 22 3 1245 235 258 14 139 chr9 86522272 86522416 -37553756 - RLTR25B LTR ERVK -516 512 387 3 1245 650 214 84 0 chr9 86525802 86525933 -37550239 - RSINE1 SINE B4 -21 144 3 3 1245 456 19 0 0 chr9 86525954 86526007 -37550165 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1245 1572 128 75 7 chr9 86526194 86526486 -37549686 - ORR1A4 LTR MaLR -17 312 1 3 1245 406 306 76 5 chr9 86527032 86527216 -37548956 + L1MCa LINE L1 401 597 -5911 3 1245 449 306 179 32 chr9 86527465 86527902 -37548270 + L1MCa LINE L1 773 1230 -5278 3 1245 1023 115 0 0 chr9 86527902 86528059 -37548113 + (GGGA)n Simple_repeat Simple_repeat 1 157 0 3 1245 449 306 179 32 chr9 86528059 86528471 -37547701 + L1MCa LINE L1 1231 1747 -4761 3 1245 1096 136 84 33 chr9 86528509 86528722 -37547450 + URR1A DNA MER1_type 3 226 0 3 1245 270 0 0 0 chr9 86530595 86530625 -37545547 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1245 2122 159 20 18 chr9 86531059 86531450 -37544722 + RLTR11A2 LTR ERVK 136 527 0 4 1245 516 191 9 0 chr9 86531450 86531560 -37544612 + L1_Mur3 LINE L1 438 548 -7164 4 1245 387 179 119 0 chr9 86531619 86531703 -37544469 + PB1D7 SINE Alu 27 120 0 4 1245 197 348 192 28 chr9 86532074 86532396 -37543776 - L2a LINE L2 -23 3403 3029 4 1245 372 336 123 22 chr9 86532459 86532687 -37543485 - L2a LINE L2 -475 2944 2694 4 1245 189 389 53 13 chr9 86532914 86533065 -37543107 - L2a LINE L2 -997 2422 2266 4 1245 1264 63 34 17 chr9 86533172 86533194 -37542978 - B2_Mm2 SINE B2 -12 183 157 4 1245 288 0 0 0 chr9 86533194 86533226 -37542946 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 4 1245 1264 63 34 17 chr9 86533226 86533382 -37542790 - B2_Mm2 SINE B2 -39 156 2 4 1245 770 89 18 0 chr9 86533449 86533561 -37542611 - L1Md_F2 LINE L1 -951 4932 4819 4 1245 5152 55 0 0 chr9 86533559 86534227 -37541945 + L1Md_F2 LINE L1 4917 5584 -299 4 1245 7278 75 13 12 chr9 86534229 86535211 -37540961 + L1Md_F2 LINE L1 5587 6569 -13 4 1245 882 134 240 23 chr9 86535291 86535466 -37540706 - B3 SINE B2 0 216 4 4 1245 400 348 30 0 chr9 86535736 86535871 -37540301 + LTR16A LTR ERVL 313 451 0 4 1245 322 361 32 14 chr9 86536640 86536856 -37539316 + ERVL-B4-int LTR ERVL 974 1193 -3803 4 1245 372 317 102 21 chr9 86537257 86537492 -37538680 + ERVL-B4-int LTR ERVL 1737 1990 -3724 4 1245 340 336 27 0 chr9 86538177 86538287 -37537885 - PB1D9 SINE Alu -7 113 1 5 1245 281 169 48 0 chr9 86539706 86539789 -37536383 + GA-rich Low_complexity Low_complexity 5 91 0 5 1245 920 148 48 16 chr9 86540549 86540735 -37535437 - B2_Mm2 SINE B2 -2 193 2 5 1245 493 310 116 9 chr9 86540897 86541320 -37534852 + L1M4 LINE L1 4000 4467 -1679 5 1245 317 297 43 49 chr9 86541356 86541519 -37534653 + MLT1H-int LTR MaLR 866 1027 -382 5 1245 265 296 14 0 chr9 86541745 86541816 -37534356 + MER94 DNA AcHobo 45 116 -18 5 1245 483 324 0 0 chr9 86542186 86542294 -37533878 + RSINE1 SINE B4 11 118 -47 5 1245 423 0 0 0 chr9 86542296 86542343 -37533829 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1245 333 0 0 0 chr9 86542343 86542379 -37533793 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1245 33 0 0 0 chr9 86542489 86542522 -37533650 + AT_rich Low_complexity Low_complexity 1 33 0 5 1245 284 297 11 11 chr9 86542855 86542947 -37533225 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 1245 769 234 62 34 chr9 86543236 86543444 -37532728 + B3 SINE B2 1 214 -2 6 1245 1132 97 49 44 chr9 86543611 86543794 -37532378 + B2_Mm2 SINE B2 2 185 -10 6 1245 23 0 0 0 chr9 86543862 86543885 -37532287 + AT_rich Low_complexity Low_complexity 1 23 0 6 1245 21 0 0 0 chr9 86545349 86545370 -37530802 + AT_rich Low_complexity Low_complexity 1 21 0 6 1245 780 217 129 11 chr9 86545480 86545666 -37530506 - B3 SINE B2 -7 209 2 6 1245 235 272 114 82 chr9 86545884 86546068 -37530104 - MIR3 SINE MIR -15 193 4 6 1245 1364 71 22 0 chr9 86546657 86546840 -37529332 - B2_Mm2 SINE B2 -7 188 2 6 1245 233 329 51 0 chr9 86547334 86547413 -37528759 + RSINE1 SINE B4 5 87 -78 6 1245 302 0 26 0 chr9 86547417 86547455 -37528717 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1245 1080 213 68 51 chr9 86547729 86548065 -37528107 + RLTR15 LTR ERVK 1 342 -17 7 1245 529 278 156 71 chr9 86548477 86548664 -37527508 + B4A SINE B4 1 210 -82 7 1245 3785 137 84 25 chr9 86548664 86549049 -37527123 - RMER6A LTR ERVK 0 756 346 7 1245 225 0 0 0 chr9 86549049 86549074 -37527098 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1245 3785 137 84 25 chr9 86549074 86549400 -37526772 - RMER6A LTR ERVK -411 345 5 7 1245 529 301 64 64 chr9 86549400 86549455 -37526717 + B4A SINE B4 211 274 -18 7 1245 799 289 0 32 chr9 86549544 86549730 -37526442 + B3A SINE B2 5 184 -14 7 1245 553 238 9 9 chr9 86550479 86550585 -37525587 - B4A SINE B4 -167 125 20 7 1245 23 0 0 0 chr9 86550765 86550788 -37525384 + AT_rich Low_complexity Low_complexity 1 23 0 7 1245 315 0 0 0 chr9 86551254 86551289 -37524883 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1245 234 98 19 38 chr9 86551315 86551368 -37524804 + GA-rich Low_complexity Low_complexity 2 53 0 7 1245 316 200 28 28 chr9 86551426 86551498 -37524674 - ID4_ SINE ID -9 74 3 7 1245 488 323 68 124 chr9 86552049 86552491 -37523681 + MER47B DNA MER2_type 1 417 -1 8 1245 1225 35 0 0 chr9 86552634 86552775 -37523397 + B1_Mus2 SINE Alu 1 141 -6 8 1245 243 0 0 0 chr9 86552784 86552811 -37523361 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 8 1245 469 203 144 16 chr9 86552904 86553029 -37523143 + B1F2 SINE Alu 1 141 -8 8 1245 460 255 69 83 chr9 86553452 86553643 -37522529 - B3A SINE B2 0 216 2 8 1245 268 295 29 7 chr9 86553943 86554083 -37522089 - L1MC4 LINE L1 -965 7077 6935 8 1245 796 138 23 0 chr9 86554351 86554481 -37521691 + RLTR20B3 LTR ERVK 338 470 -107 8 1245 1056 114 66 0 chr9 86554487 86554654 -37521518 + B2_Mm2 SINE B2 4 181 -14 8 1245 412 213 16 115 chr9 86554691 86554813 -37521359 + RLTR20B3 LTR ERVK 468 577 0 8 1245 431 266 58 29 chr9 86555358 86555532 -37520640 + B3A SINE B2 4 182 -16 8 1245 1245 14 7 0 chr9 86555573 86555718 -37520454 + B1_Mm SINE Alu 2 147 0 8 1245 235 232 0 18 chr9 86555718 86555767 -37520405 + GA-rich Low_complexity Low_complexity 10 58 0 9 1245 417 252 54 45 chr9 86556365 86556477 -37519695 - PB1D10 SINE Alu -2 115 3 9 1245 1678 188 48 40 chr9 86556518 86556767 -37519405 - ORR1D1 LTR MaLR 0 374 131 9 1245 195 42 0 0 chr9 86556767 86556791 -37519381 + (C)n Simple_repeat Simple_repeat 1 24 0 9 1245 1678 188 48 40 chr9 86556791 86556912 -37519260 - ORR1D1 LTR MaLR -244 130 3 9 1245 215 171 0 47 chr9 86557148 86557191 -37518981 + PB1D10 SINE Alu 66 106 -11 9 1245 348 180 0 16 chr9 86557191 86557253 -37518919 + Lx8 LINE L1 6406 6466 -1007 9 1245 1394 79 11 0 chr9 86557255 86557433 -37518739 + B2_Mm1t SINE B2 2 181 -12 9 1245 1203 68 0 0 chr9 86557433 86557579 -37518593 + B1_Mus2 SINE Alu 1 147 0 9 1245 324 0 0 0 chr9 86557582 86557618 -37518554 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1245 340 125 313 96 chr9 86557689 86557804 -37518368 + B2_Mm2 SINE B2 47 186 -9 9 1245 1361 291 100 16 chr9 86557819 86558332 -37517840 + Lx8 LINE L1 6523 7130 -514 9 1245 1095 216 9 9 chr9 86558361 86558571 -37517601 + Lx8 LINE L1 7114 7323 -150 9 1245 420 208 21 0 chr9 86558575 86558671 -37517501 + L1_Mur2 LINE L1 4818 4915 -962 1 1245 6141 146 35 8 chr9 86558672 86560242 -37515930 + Lx5 LINE L1 4856 6473 -577 1 1245 834 251 38 14 chr9 86560288 86560498 -37515674 + B3 SINE B2 1 215 -1 1 1245 1321 77 50 0 chr9 86563277 86563458 -37512714 + B2_Mm1t SINE B2 1 190 -3 1 1245 232 295 16 0 chr9 86563509 86563570 -37512602 + RSINE1 SINE B4 73 134 -31 1 1245 270 0 0 0 chr9 86563575 86563605 -37512567 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1245 489 291 90 61 chr9 86563880 86563960 -37512212 + MLT2D LTR ERVL 1 77 -337 1 1245 609 221 0 69 chr9 86563960 86564120 -37512052 - B1_Mur2 SINE Alu 0 149 1 1 1245 489 291 90 61 chr9 86564120 86564317 -37511855 + MLT2D LTR ERVL 78 286 -128 1 1245 351 0 0 0 chr9 86564402 86564441 -37511731 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 1 1245 547 268 7 0 chr9 86564441 86564594 -37511578 - L1Md_F2 LINE L1 -181 6401 6248 1 1245 698 168 26 53 chr9 86565139 86565290 -37510882 - B1_Mur3 SINE Alu 0 149 3 1 1245 314 254 0 0 chr9 86565231 86565298 -37510874 - B4A SINE B4 -146 146 80 1 1245 23 54 0 0 chr9 86565388 86565425 -37510747 + AT_rich Low_complexity Low_complexity 1 37 0 1 1245 492 271 0 0 chr9 86565651 86565888 -37510284 + (CACTG)n Simple_repeat Simple_repeat 1 237 0 1 1245 6201 49 0 14 chr9 86567585 86568355 -37507817 + L1Md_F2 LINE L1 5823 6581 -1 1 1245 652 167 68 0 chr9 86568518 86568650 -37507522 - B1_Mur1 SINE Alu 0 149 9 1 1245 395 219 167 0 chr9 86569651 86569765 -37506407 + B1_Mur4 SINE Alu 2 134 -16 1 1245 263 237 145 0 chr9 86569766 86569842 -37506330 + BC1_Mm scRNA scRNA 1 87 -65 1 1245 289 256 43 65 chr9 86569990 86570082 -37506090 + Lx8 LINE L1 7131 7220 -253 1 1245 3710 84 132 23 chr9 86570194 86570768 -37505404 + Lx LINE L1 6015 6651 -3 1 1245 347 206 41 0 chr9 86570788 86570861 -37505311 + RMER15 LTR ERVL 56 131 -444 1 1245 829 263 109 29 chr9 86570984 86571368 -37504804 + L1MA8 LINE L1 5727 6141 -150 1 1245 375 246 15 106 chr9 86571402 86571534 -37504638 - B3A SINE B2 -48 150 29 1 1245 313 282 97 0 chr9 86572080 86572183 -37503989 + PB1D9 SINE Alu 2 114 -6 1 1245 822 269 62 0 chr9 86572217 86572474 -37503698 + B4A SINE B4 2 274 -18 1 1245 210 171 0 0 chr9 86572495 86572536 -37503636 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 1 1245 718 204 29 0 chr9 86572743 86572880 -37503292 - B1_Mur1 SINE Alu -6 143 3 1 1245 525 206 7 42 chr9 86573368 86573510 -37502662 + ERVL-int LTR ERVL 5318 5454 -303 1 1245 541 259 181 24 chr9 86574084 86574333 -37501839 + B4A SINE B4 1 288 -4 1 1245 2709 232 63 107 chr9 86574674 86575621 -37500551 + Lx9 LINE L1 6544 7449 -195 1 1245 761 216 122 47 chr9 86576193 86576514 -37499658 + MLT1A0 LTR MaLR 6 350 -15 1 1245 220 259 0 17 chr9 86577277 86577336 -37498836 + (TAA)n Simple_repeat Simple_repeat 2 59 0 1 1245 216 230 193 11 chr9 86578638 86578726 -37497446 + PB1D10 SINE Alu 14 117 0 1 1245 21 57 0 0 chr9 86578884 86578919 -37497253 + AT_rich Low_complexity Low_complexity 1 35 0 1 1245 892 322 31 21 chr9 86578985 86579274 -37496898 - B4A SINE B4 0 292 1 1 1245 379 187 32 42 chr9 86579438 86579533 -37496639 + B1F2 SINE Alu 43 136 -13 1 1245 216 0 0 0 chr9 86579534 86579558 -37496614 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1 1245 236 170 21 0 chr9 86579567 86579614 -37496558 + ID_B1 SINE B4 177 224 0 1 1245 375 300 91 0 chr9 86579655 86579765 -37496407 + B4 SINE B4 171 290 -2 1 1245 336 64 0 0 chr9 86579771 86579818 -37496354 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1245 1263 69 86 0 chr9 86580076 86580251 -37495921 - B2_Mm2 SINE B2 -4 191 2 1 1245 237 108 0 0 chr9 86580502 86580539 -37495633 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1245 535 299 103 90 chr9 86580540 86580977 -37495195 - MLT2B4 LTR ERVL -45 475 28 1 1245 882 229 230 9 chr9 86581056 86581382 -37494790 - MTD LTR MaLR -16 403 6 1 1245 1499 196 105 26 chr9 86581523 86581905 -37494267 - MTD LTR MaLR -7 412 1 1 1245 226 240 100 0 chr9 86582396 86582496 -37493676 + L1MEf LINE L1 865 974 -5226 1 1245 979 260 26 19 chr9 86582623 86582893 -37493279 + B4A SINE B4 10 281 -11 1 1245 412 128 26 0 chr9 86583115 86583193 -37492979 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 1245 804 316 51 21 chr9 86583193 86583565 -37492607 + L1MEf LINE L1 1326 1708 -4492 1 1245 468 209 146 16 chr9 86583630 86583815 -37492357 + L1MEf LINE L1 1929 2137 -4063 1 1245 438 269 136 6 chr9 86583896 86584072 -37492100 + MER99 DNA hAT? 602 800 -31 1 1245 1181 55 0 14 chr9 86584191 86584339 -37491833 - B1_Mus2 SINE Alu -1 146 1 1 1245 303 236 165 0 chr9 86584401 86584528 -37491644 - L1MA8 LINE L1 -12 6279 6132 1 1245 435 105 0 65 chr9 86584984 86585076 -37491096 + B2_Mm2 SINE B2 109 194 -1 1 1245 450 127 0 0 chr9 86585883 86585954 -37490218 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1245 665 213 51 14 chr9 86585976 86586114 -37490058 + B1F SINE Alu 5 147 -2 1 1245 332 238 0 9 chr9 86586116 86586222 -37489950 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1245 1389 78 0 40 chr9 86586500 86586700 -37489472 + B2_Mm2 SINE B2 1 192 -3 1 1245 548 228 14 68 chr9 86586889 86587035 -37489137 + B1_Mur1 SINE Alu 11 148 -1 1 1245 207 0 0 0 chr9 86587364 86587387 -37488785 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1245 538 163 0 11 chr9 86587447 86587540 -37488632 - B3A SINE B2 -103 95 4 1 1245 23 0 0 0 chr9 86587749 86587772 -37488400 + AT_rich Low_complexity Low_complexity 1 23 0 1 1245 1293 14 0 0 chr9 86588436 86588582 -37487590 + B1_Mus2 SINE Alu 2 147 0 1 1245 309 51 0 0 chr9 86588871 86588910 -37487262 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1245 23 0 0 0 chr9 86589841 86589864 -37486308 + GC_rich Low_complexity Low_complexity 1 23 0 1 1245 30 0 0 0 chr9 86589908 86589938 -37486234 + GC_rich Low_complexity Low_complexity 1 30 0 1 1245 1021 83 7 46 chr9 86591494 86591646 -37484526 + B1_Mur4 SINE Alu 5 150 0 1 1245 219 36 0 0 chr9 86591648 86591676 -37484496 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1245 518 276 35 20 chr9 86591687 86591845 -37484327 + B3A SINE B2 1 161 -55 1 1245 414 0 0 0 chr9 86591845 86591891 -37484281 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1245 470 311 60 22 chr9 86591891 86591916 -37484256 + B3 SINE B2 162 190 -26 1 1245 186 118 0 0 chr9 86592267 86592301 -37483871 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1245 859 154 35 7 chr9 86592305 86592449 -37483723 - B1_Mus1 SINE Alu 0 148 1 1 1245 21 57 0 0 chr9 86592449 86592484 -37483688 + AT_rich Low_complexity Low_complexity 1 35 0 1 1245 200 225 0 0 chr9 86592582 86592622 -37483550 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 1 1245 336 48 0 0 chr9 86592906 86592948 -37483224 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1245 405 0 0 0 chr9 86593025 86593070 -37483102 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1 1245 367 232 49 0 chr9 86593105 86593187 -37482985 - U1 snRNA snRNA -77 88 3 1 1245 438 261 35 9 chr9 86593265 86593381 -37482791 - PB1D7 SINE Alu -1 119 1 1 1245 276 30 0 0 chr9 86593629 86593662 -37482510 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1245 288 210 119 36 chr9 86594018 86594102 -37482070 + PB1 SINE Alu 17 107 -20 1 1245 483 18 0 0 chr9 86596279 86596335 -37479837 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1245 850 182 7 0 chr9 86596498 86596635 -37479537 + B1_Mur1 SINE Alu 5 142 -7 1 1245 997 67 0 0 chr9 86596650 86596785 -37479387 + B1_Mus1 SINE Alu 5 139 -9 1 1245 189 0 0 0 chr9 86596785 86596806 -37479366 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1245 22 35 0 0 chr9 86596806 86596835 -37479337 + AT_rich Low_complexity Low_complexity 1 29 0 1 1245 3160 53 2 15 chr9 86597042 86597446 -37478726 + MTB LTR MaLR 1 399 -1 1 1245 2400 96 9 3 chr9 86597977 86598301 -37477871 - ORR1A3 LTR MaLR 0 326 1 1 1245 1213 242 79 120 chr9 86598633 86599245 -37476927 + RMER1B Other Other 1 593 -473 1 1245 427 236 21 11 chr9 86599245 86599339 -37476833 + RMER1A Other Other 145 239 -791 1 1245 3087 244 177 27 chr9 86599341 86600234 -37475938 + RMER1A Other Other 3 1029 -1 1 1245 21 0 0 0 chr9 86600265 86600286 -37475886 + AT_rich Low_complexity Low_complexity 1 21 0 1 1245 451 273 91 0 chr9 86600311 86600476 -37475696 + B3A SINE B2 1 180 -18 1 1245 346 339 34 73 chr9 86600627 86600831 -37475341 + B4A SINE B4 31 226 -66 1 1245 483 18 0 0 chr9 86601072 86601128 -37475044 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1245 293 265 0 24 chr9 86601626 86601711 -37474461 - MIRm SINE MIR -3 273 191 1 1245 704 270 23 47 chr9 86601816 86602030 -37474142 - B3 SINE B2 -7 209 1 1 1245 1348 214 37 62 chr9 86602255 86602608 -37473564 - MTEa LTR MaLR -1 378 35 1 1245 251 286 84 0 chr9 86602513 86602632 -37473540 - MT2A LTR ERVL -404 129 1 1 1245 186 298 115 21 chr9 86603724 86603820 -37472352 + L3 LINE CR1 4077 4181 -308 1 1245 186 330 185 8 chr9 86604394 86604513 -37471659 + L3 LINE CR1 4349 4488 -1 1 1245 1191 257 89 39 chr9 86605567 86605927 -37470245 - MTE2b LTR MaLR 0 379 2 1 1245 855 149 60 0 chr9 86605943 86606111 -37470061 + URR1B DNA MER1_type 48 225 0 1 1245 321 243 116 41 chr9 86606265 86606387 -37469785 - MER3 DNA MER1_type -78 131 4 1 1245 839 234 87 104 chr9 86606573 86606920 -37469252 + MER67C LTR ERV1 42 411 -300 2 1245 1260 190 103 7 chr9 86607638 86607919 -37468253 + RMER19B LTR ERVK 357 664 -238 2 1245 388 162 0 39 chr9 86607943 86608020 -37468152 + RMER19B LTR ERVK 829 902 0 2 1245 804 277 72 0 chr9 86608570 86608765 -37467407 - B3 SINE B2 -6 210 2 2 1245 297 306 132 0 chr9 86608997 86609118 -37467054 + MLT1C LTR MaLR 37 173 -294 2 1245 710 125 17 0 chr9 86609150 86609270 -37466902 + (GAAA)n Simple_repeat Simple_repeat 2 123 0 2 1245 1692 192 58 42 chr9 86609271 86609705 -37466467 - RMER10A LTR ERVL -1 441 1 2 1245 609 291 108 40 chr9 86609713 86609964 -37466208 + MLT1C LTR MaLR 200 467 0 2 1245 228 293 13 26 chr9 86610332 86610409 -37465763 + PB1D10 SINE Alu 24 99 -18 2 1245 241 246 15 30 chr9 86610413 86610480 -37465692 + ID2 SINE ID 3 68 -15 2 1245 840 20 0 0 chr9 86610485 86610583 -37465589 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 2 1245 1125 273 68 34 chr9 86610913 86611458 -37464714 - MER67B LTR ERV1 -197 464 1 2 1245 224 322 22 0 chr9 86611521 86611611 -37464561 + PB1D10 SINE Alu 21 112 -5 2 1245 450 177 47 64 chr9 86611628 86611737 -37464435 + B1F1 SINE Alu 13 196 -115 2 1245 283 98 33 0 chr9 86611741 86611802 -37464370 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 2 1245 525 231 0 69 chr9 86611840 86611877 -37464295 + ORR1D2 LTR MaLR 2 38 -332 2 1245 2485 86 6 0 chr9 86611877 86612202 -37463970 - ORR1A2 LTR MaLR 0 327 1 2 1245 525 231 0 69 chr9 86612202 86612308 -37463864 + ORR1D2 LTR MaLR 39 135 -235 2 1245 350 135 0 0 chr9 86612320 86612372 -37463800 - Lx2 LINE L1 -1072 5925 5874 2 1245 844 221 53 22 chr9 86612372 86612599 -37463573 + ORR1D2 LTR MaLR 127 360 -10 2 1245 189 0 0 0 chr9 86613106 86613127 -37463045 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1245 322 290 102 78 chr9 86613874 86614158 -37462014 - B4 SINE B4 0 292 2 2 1245 450 0 0 0 chr9 86614906 86614956 -37461216 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1245 973 168 117 0 chr9 86615695 86615892 -37460280 - URR1A DNA MER1_type 0 226 7 2 1245 327 216 105 29 chr9 86616073 86616178 -37459994 + PB1D7 SINE Alu 7 119 -1 2 1245 265 279 33 55 chr9 86616267 86616285 -37459887 - ID_B1 SINE B4 -53 171 84 2 1245 298 264 42 0 chr9 86616285 86616357 -37459815 - PB1D10 SINE Alu -40 77 3 2 1245 22 0 0 0 chr9 86616421 86616443 -37459729 + AT_rich Low_complexity Low_complexity 1 22 0 2 1245 29 0 0 0 chr9 86616586 86616615 -37459557 + AT_rich Low_complexity Low_complexity 1 29 0 2 1245 573 76 0 0 chr9 86616618 86616697 -37459475 + (TG)n Simple_repeat Simple_repeat 1 79 0 2 1245 426 308 20 27 chr9 86616701 86616851 -37459321 - RSINE1 SINE B4 -16 149 1 2 1245 390 203 66 8 chr9 86617813 86617935 -37458237 + B1F SINE Alu 1 141 -8 2 1245 336 244 0 58 chr9 86617949 86618036 -37458136 + ID4_ SINE ID 2 83 0 2 1245 25 0 0 0 chr9 86618046 86618071 -37458101 + AT_rich Low_complexity Low_complexity 1 25 0 2 1245 477 0 0 0 chr9 86618132 86618185 -37457987 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1245 384 222 126 8 chr9 86618198 86618325 -37457847 - B4A SINE B4 -18 274 133 2 1245 37 0 0 0 chr9 86618379 86618416 -37457756 + AT_rich Low_complexity Low_complexity 1 37 0 2 1245 450 219 0 0 chr9 86637200 86637346 -37438826 + (TG)n Simple_repeat Simple_repeat 1 146 0 2 1245 498 300 22 66 chr9 86637455 86637637 -37438535 + B4A SINE B4 2 175 -117 2 1246 189 0 0 0 chr9 86639421 86639442 -37436730 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1246 241 292 0 71 chr9 86639810 86639880 -37436292 - B4 SINE B4 0 292 228 2 1246 378 0 0 0 chr9 86639896 86639938 -37436234 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1246 198 0 0 0 chr9 86639938 86639959 -37436213 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1246 750 237 6 0 chr9 86639969 86640125 -37436047 - B3A SINE B2 -41 157 1 2 1246 415 283 9 0 chr9 86640295 86640408 -37435764 - PB1D9 SINE Alu -5 115 2 2 1246 359 313 22 15 chr9 86640468 86640604 -37435568 - B4 SINE B4 -155 137 1 2 1246 227 244 32 43 chr9 86640609 86640703 -37435469 - MLT1D LTR MaLR -9 496 404 2 1246 408 328 63 11 chr9 86640785 86640976 -37435196 - MLT1D LTR MaLR -270 235 35 2 1246 416 245 39 0 chr9 86641083 86641185 -37434987 - PB1 SINE Alu -11 116 11 2 1246 273 255 20 60 chr9 86641098 86641198 -37434974 - B4A SINE B4 -114 178 83 2 1246 286 263 158 0 chr9 86641213 86641289 -37434883 - PB1D10 SINE Alu -5 122 35 2 1246 741 224 113 15 chr9 86642467 86642671 -37433501 + ID_B1 SINE B4 1 224 0 2 1246 892 245 38 14 chr9 86644144 86644355 -37431817 - B3 SINE B2 0 216 1 2 1246 964 158 7 0 chr9 86645087 86645233 -37430939 + B1_Mur1 SINE Alu 1 147 -2 2 1246 335 146 0 0 chr9 86645323 86645378 -37430794 + B1_Mus1 SINE Alu 1 55 -93 2 1246 231 203 30 30 chr9 86645378 86645389 -37430783 + ID_B1 SINE B4 82 147 -77 2 1246 235 0 0 160 chr9 86645389 86645508 -37430664 + (CAGAG)n Simple_repeat Simple_repeat 1 100 0 2 1246 637 122 0 45 chr9 86645511 86645623 -37430549 + B1_Mur3 SINE Alu 42 148 -1 2 1246 189 0 0 0 chr9 86645684 86645705 -37430467 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1246 235 240 0 0 chr9 86646256 86646306 -37429866 + Lx8 LINE L1 7081 7130 -343 2 1246 252 160 253 0 chr9 86646533 86646608 -37429564 + PB1 SINE Alu 27 120 -7 2 1246 3726 37 0 0 chr9 86646610 86647047 -37429125 + L1Md_A LINE L1 6146 6582 0 2 1246 3448 60 2 15 chr9 86650212 86650690 -37425482 + LTRIS2 LTR ERV1 1 472 -92 2 1246 318 164 40 27 chr9 86651825 86651900 -37424272 - MTE2b LTR MaLR 0 379 304 2 1246 1294 168 112 7 chr9 86652987 86653263 -37422909 + RMER12 LTR ERVK 4 308 -1014 2 1246 1594 118 18 29 chr9 86653336 86653618 -37422554 + RMER12 LTR ERVK 447 704 -618 2 1246 594 75 0 0 chr9 86653855 86653935 -37422237 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 2 1246 232 283 0 0 chr9 86654178 86654238 -37421934 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 2 1246 22 56 0 0 chr9 86654485 86654521 -37421651 + AT_rich Low_complexity Low_complexity 1 36 0 2 1246 491 220 114 0 chr9 86654787 86654919 -37421253 + B1_Mur1 SINE Alu 3 149 0 2 1246 873 94 57 0 chr9 86654994 86655149 -37421023 + B2_Mm2 SINE B2 6 199 -17 2 1246 25 0 0 0 chr9 86655806 86655831 -37420341 + AT_rich Low_complexity Low_complexity 1 25 0 2 1246 376 252 133 18 chr9 86655843 86655956 -37420216 - B3 SINE B2 -89 127 2 2 1246 312 283 125 0 chr9 86656002 86656122 -37420050 - MIRb SINE MIR -43 225 91 2 1246 301 357 126 9 chr9 86656335 86656550 -37419622 + Charlie1b DNA MER1_type 16 255 -268 2 1246 792 202 69 0 chr9 86656550 86656738 -37419434 + Lx9 LINE L1 7317 7517 -127 2 1246 267 250 0 0 chr9 86656739 86656803 -37419369 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1246 385 274 104 0 chr9 86656803 86656967 -37419205 + Lx9 LINE L1 7457 7637 -7 2 1246 487 225 162 30 chr9 86657004 86657238 -37418934 + Charlie1b DNA MER1_type 259 523 0 2 1246 637 254 14 74 chr9 86657481 86657698 -37418474 - B3 SINE B2 -12 204 1 2 1246 552 282 82 13 chr9 86658109 86658267 -37417905 + B3 SINE B2 46 214 -2 2 1246 233 282 25 13 chr9 86658423 86658502 -37417670 - ID2 SINE ID -3 80 1 2 1246 43 47 0 0 chr9 86658839 86658903 -37417269 + AT_rich Low_complexity Low_complexity 1 64 0 2 1246 430 342 30 64 chr9 86658903 86658939 -37417233 - B3A SINE B2 -2 196 163 2 1246 360 64 0 0 chr9 86658939 86658986 -37417186 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1246 430 342 30 64 chr9 86658986 86659152 -37417020 - B3A SINE B2 -36 162 2 2 1246 23 33 0 0 chr9 86659914 86659944 -37416228 + AT_rich Low_complexity Low_complexity 1 30 0 2 1246 22 0 0 0 chr9 86660036 86660058 -37416114 + AT_rich Low_complexity Low_complexity 1 22 0 2 1246 520 241 0 0 chr9 86661404 86661512 -37414660 - PB1D10 SINE Alu -9 108 1 2 1246 411 73 0 0 chr9 86664333 86664388 -37411784 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1246 535 237 57 7 chr9 86665258 86665398 -37410774 + B1_Mur1 SINE Alu 1 147 -2 2 1246 1588 212 70 15 chr9 86666260 86666657 -37409515 + MTD LTR MaLR 1 419 0 2 1246 474 290 152 84 chr9 86666740 86667180 -37408992 + MER21B LTR ERV1 147 616 -247 2 1246 234 298 60 0 chr9 86667275 86667359 -37408813 - YREP_Mm Unknown Unknown -1519 293 205 2 1246 1812 199 98 18 chr9 86669690 86670078 -37406094 - MTD LTR MaLR 0 419 1 2 1246 572 277 63 32 chr9 86670886 86671076 -37405096 - B3A SINE B2 -1 197 2 2 1246 982 33 0 39 chr9 86671100 86671227 -37404945 + B1_Mus1 SINE Alu 18 139 -9 2 1246 270 0 0 0 chr9 86671227 86671257 -37404915 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1246 266 0 29 0 chr9 86671547 86671581 -37404591 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1246 560 279 36 52 chr9 86672183 86672376 -37403796 + MER68 LTR ERVL 124 313 -250 2 1246 232 333 15 68 chr9 86672523 86672655 -37403517 - L2a LINE L2 -46 3380 3256 2 1246 303 350 0 39 chr9 86672902 86673030 -37403142 - PB1 SINE Alu -3 124 2 2 1246 1161 317 90 48 chr9 86673371 86674364 -37401808 - L1MB7 LINE L1 -1 6183 5149 2 1246 419 275 81 134 chr9 86674364 86674587 -37401585 - B3 SINE B2 -5 211 1 2 1246 541 296 175 18 chr9 86674587 86674761 -37401411 - L1MB7 LINE L1 -998 5148 4943 2 1246 496 178 120 9 chr9 86674781 86674889 -37401283 - B3A SINE B2 -78 120 1 2 1246 330 290 15 122 chr9 86674898 86675068 -37401104 - L1MB7 LINE L1 -1239 4907 4760 2 1246 1055 144 49 22 chr9 86675068 86675252 -37400920 - B2_Mm2 SINE B2 -6 189 1 2 1246 330 290 15 122 chr9 86675252 86675344 -37400828 - L1MB7 LINE L1 -1387 4759 4673 2 1246 299 294 143 0 chr9 86675941 86676060 -37400112 + L2a LINE L2 3289 3424 -2 2 1246 189 0 0 0 chr9 86676154 86676175 -37399997 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1246 222 346 129 42 chr9 86676792 86676985 -37399187 + MIRb SINE MIR 50 259 -9 2 1246 802 170 37 7 chr9 86678595 86678731 -37397441 + B1_Mur4 SINE Alu 2 141 -9 3 1246 243 88 0 0 chr9 86679657 86679691 -37396481 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 3 1246 774 218 0 70 chr9 86679698 86679856 -37396316 - B1_Mur1 SINE Alu 0 149 3 3 1246 380 320 43 53 chr9 86680786 86680974 -37395198 + RMER30 DNA MER1_type 1 186 -16 3 1246 189 279 0 0 chr9 86680994 86681037 -37395135 - MIR SINE MIR -59 203 161 3 1246 849 124 44 0 chr9 86681185 86681322 -37394850 + URR1B DNA MER1_type 83 225 0 3 1246 21 71 0 0 chr9 86682448 86682490 -37393682 + AT_rich Low_complexity Low_complexity 1 42 0 3 1246 180 0 0 0 chr9 86686249 86686269 -37389903 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1246 343 311 0 19 chr9 86687325 86687430 -37388742 + (CGG)n Simple_repeat Simple_repeat 3 105 0 3 1246 24 32 0 0 chr9 86688750 86688781 -37387391 + AT_rich Low_complexity Low_complexity 1 31 0 3 1246 200 376 32 11 chr9 86690120 86690214 -37385958 - MIR SINE MIR -155 107 12 3 1246 376 263 40 10 chr9 86690583 86690683 -37385489 - RSINE1 SINE B4 -61 104 2 3 1246 28 29 0 0 chr9 86690820 86690855 -37385317 + AT_rich Low_complexity Low_complexity 1 35 0 3 1246 414 306 27 0 chr9 86691126 86691237 -37384935 - B1F SINE Alu 0 149 36 3 1246 306 101 43 0 chr9 86692871 86692940 -37383232 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 3 1246 264 262 25 12 chr9 86693859 86693940 -37382232 - MIR3 SINE MIR -29 179 98 3 1246 720 227 178 20 chr9 86694097 86694299 -37381873 - MTD LTR MaLR -185 234 1 3 1246 27 62 0 0 chr9 86695081 86695129 -37381043 + AT_rich Low_complexity Low_complexity 1 48 0 3 1246 195 42 0 0 chr9 86695536 86695560 -37380612 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 3 1246 299 0 73 0 chr9 86695976 86696017 -37380155 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1246 2893 306 82 27 chr9 86696052 86697099 -37379073 + Lx8 LINE L1 6268 7389 -84 3 1246 1122 194 373 13 chr9 86697099 86697407 -37378765 + MTD LTR MaLR 1 419 0 3 1246 2893 306 82 27 chr9 86697407 86697501 -37378671 + Lx8 LINE L1 7390 7472 -1 3 1246 25 65 0 0 chr9 86697595 86697641 -37378531 + AT_rich Low_complexity Low_complexity 1 46 0 3 1246 490 305 70 70 chr9 86698240 86698624 -37377548 + LTR37B LTR ERV1 46 429 -39 3 1246 486 279 81 43 chr9 86699522 86699683 -37376489 - MER58A DNA MER1_type -17 207 41 3 1246 271 0 0 49 chr9 86699705 86699746 -37376426 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1246 189 0 0 0 chr9 86699785 86699806 -37376366 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 3 1246 237 257 28 28 chr9 86700133 86700205 -37375967 + Charlie15a DNA MER1_type 129 200 -24 3 1246 394 315 58 3 chr9 86700815 86700948 -37375224 - B1F1 SINE Alu -4 144 9 3 1246 580 299 13 20 chr9 86701986 86702136 -37374036 + B4A SINE B4 2 150 -142 3 1246 1056 111 0 0 chr9 86702228 86702408 -37373764 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1246 585 194 0 0 chr9 86703848 86703946 -37372226 - B3A SINE B2 -99 99 2 3 1246 234 305 167 25 chr9 86704068 86704307 -37371865 + L1MB3 LINE L1 5861 6133 -50 3 1246 21 95 0 0 chr9 86705435 86705498 -37370674 + AT_rich Low_complexity Low_complexity 1 63 0 3 1246 1495 202 134 19 chr9 86706478 86706851 -37369321 + MTD LTR MaLR 1 416 -3 3 1246 359 262 111 32 chr9 86707346 86707362 -37368810 - ID_B1 SINE B4 -8 216 82 3 1246 609 211 9 0 chr9 86707362 86707471 -37368701 - B1_Mur4 SINE Alu -40 110 1 3 1246 414 0 0 0 chr9 86708778 86708824 -37367348 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 3 1246 2671 138 52 25 chr9 86709561 86710001 -37366171 - Lx4B LINE L1 -5 7053 6602 3 1246 24 32 0 0 chr9 86710879 86710910 -37365262 + AT_rich Low_complexity Low_complexity 1 31 0 3 1246 23 0 0 0 chr9 86711194 86711217 -37364955 + AT_rich Low_complexity Low_complexity 1 23 0 3 1246 312 27 0 0 chr9 86711909 86711946 -37364226 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1246 709 167 0 0 chr9 86712298 86712406 -37363766 - PB1D9 SINE Alu -7 113 6 3 1246 771 213 84 58 chr9 86713482 86713864 -37362308 + Lx7 LINE L1 7203 7695 -1 3 1246 791 237 11 33 chr9 86713884 86714067 -37362105 - B3A SINE B2 -18 180 2 3 1246 25 51 0 0 chr9 86715334 86715373 -37360799 + AT_rich Low_complexity Low_complexity 1 39 0 3 1246 947 200 9 25 chr9 86715511 86715743 -37360429 + B3A SINE B2 2 212 -4 3 1246 309 51 0 0 chr9 86715967 86716006 -37360166 + (TCC)n Simple_repeat Simple_repeat 2 40 0 3 1246 334 53 35 0 chr9 86716619 86716676 -37359496 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 1246 1262 122 133 0 chr9 86716956 86717152 -37359020 + URR1A DNA MER1_type 5 226 0 3 1246 402 21 0 0 chr9 86717615 86717662 -37358510 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1246 23 0 0 0 chr9 86717800 86717823 -37358349 + AT_rich Low_complexity Low_complexity 1 23 0 3 1246 336 102 0 0 chr9 86720735 86720784 -37355388 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1246 246 242 237 63 chr9 86721265 86721455 -37354717 + Lx8 LINE L1 7247 7469 -4 3 1246 1966 206 2 61 chr9 86722239 86722253 -37353919 + MTC LTR MaLR 6 19 -402 3 1246 276 77 0 0 chr9 86722253 86722292 -37353880 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 1246 1966 206 2 61 chr9 86722292 86722717 -37353455 + MTC LTR MaLR 20 419 -2 3 1246 1017 58 0 7 chr9 86723505 86723645 -37352527 + B1_Mus1 SINE Alu 7 145 -3 3 1246 1326 135 40 0 chr9 86725381 86725581 -37350591 + B3 SINE B2 4 211 -5 3 1246 354 318 9 23 chr9 86725837 86725968 -37350204 + MER5A DNA MER1_type 1 129 -37 3 1246 297 252 65 40 chr9 86726342 86726466 -37349706 - L1MC2 LINE L1 -335 6009 5883 3 1246 867 256 105 3 chr9 86726662 86727051 -37349121 + RMER15 LTR ERVL 30 525 -50 3 1246 558 205 89 16 chr9 86727050 86727174 -37348998 - B3A SINE B2 -2 196 64 3 1246 680 308 19 37 chr9 86727178 86727448 -37348724 - L1MCa LINE L1 -4930 1578 1314 3 1246 531 300 116 22 chr9 86727620 86727896 -37348276 - L1MCa LINE L1 -6204 304 3 3 1246 483 351 80 17 chr9 86728114 86728415 -37347757 + ERVL-E-int LTR ERVL 2261 2580 -3087 3 1246 403 342 106 13 chr9 86728429 86728805 -37347367 + ERVL-E-int LTR ERVL 2631 3041 -2626 3 1246 255 297 57 48 chr9 86729118 86729242 -37346930 + ERVL-E-int LTR ERVL 3441 3565 -2102 3 1246 199 379 16 24 chr9 86730311 86730438 -37345734 + L4 LINE RTE 318 443 -1586 3 1246 499 331 45 26 chr9 86730567 86730831 -37345341 - L1MD2 LINE L1 -13 6346 6078 3 1246 443 211 274 12 chr9 86730856 86730889 -37345283 - B3 SINE B2 -4 212 171 3 1246 189 0 0 0 chr9 86730889 86730910 -37345262 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 3 1246 443 211 274 12 chr9 86730910 86731044 -37345128 - B3 SINE B2 -46 170 3 3 1246 880 126 31 195 chr9 86731734 86731856 -37344316 + URR1A DNA MER1_type 13 110 -116 3 1246 824 153 219 38 chr9 86731856 86732039 -37344133 - B3 SINE B2 0 216 1 3 1246 880 126 31 195 chr9 86732039 86732172 -37344000 + URR1A DNA MER1_type 111 226 0 3 1246 25 0 0 0 chr9 86733485 86733510 -37342662 + AT_rich Low_complexity Low_complexity 1 25 0 3 1246 1769 220 52 20 chr9 86734709 86735113 -37341059 + MTD LTR MaLR 1 417 -2 3 1246 297 174 0 0 chr9 86736374 86736443 -37339729 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1246 754 228 44 0 chr9 86736491 86736649 -37339523 - B3A SINE B2 -31 167 3 3 1246 661 269 31 57 chr9 86736679 86736872 -37339300 - B3A SINE B2 -1 197 10 3 1246 2860 175 42 5 chr9 86737081 86737554 -37338618 + RLTR20A2 LTR ERVK 3 479 -99 3 1246 297 51 0 0 chr9 86737554 86737593 -37338579 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1246 2860 175 42 5 chr9 86737593 86737671 -37338501 + RLTR20A2 LTR ERVK 480 573 -5 3 1246 245 213 18 18 chr9 86738056 86738166 -37338006 + (TA)n Simple_repeat Simple_repeat 1 110 0 3 1246 36 0 0 0 chr9 86738191 86738227 -37337945 + AT_rich Low_complexity Low_complexity 1 36 0 3 1246 294 29 0 0 chr9 86738932 86738967 -37337205 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1246 244 196 0 0 chr9 86739046 86739097 -37337075 - PB1 SINE Alu -11 116 66 3 1246 574 315 39 30 chr9 86739157 86739360 -37336812 + MER58A DNA MER1_type 4 208 -16 3 1246 343 193 195 94 chr9 86739560 86739709 -37336463 + RSINE1 SINE B4 2 165 0 3 1246 915 153 7 0 chr9 86739827 86739971 -37336201 - B1_Mur1 SINE Alu 0 149 5 3 1246 235 343 30 0 chr9 86740499 86740633 -37335539 - L1M5 LINE L1 -288 5891 5754 3 1246 218 288 100 0 chr9 86742146 86742226 -37333946 + PB1D7 SINE Alu 19 106 -14 3 1246 730 243 7 0 chr9 86742384 86742532 -37333640 + RSINE1 SINE B4 2 150 -15 3 1246 549 274 0 13 chr9 86742879 86743034 -37333138 + MLT1A0 LTR MaLR 15 167 -198 3 1246 5657 26 1 0 chr9 86744113 86744762 -37331410 + L1Md_A LINE L1 5933 6582 0 3 1246 316 301 10 10 chr9 86744915 86745019 -37331153 + G-rich Low_complexity Low_complexity 3 106 0 3 1246 476 322 106 29 chr9 86745756 86746431 -37329741 - L2a LINE L2 -10 3416 2672 3 1246 266 338 2 19 chr9 86748471 86748587 -37327585 + PB1D10 SINE Alu 1 113 -34 3 1246 662 216 433 7 chr9 86749088 86749381 -37326791 + MTD LTR MaLR 2 419 0 3 1246 981 189 73 22 chr9 86750402 86750634 -37325538 + RMER4B LTR ERVK 12 255 -330 3 1246 380 200 0 8 chr9 86750634 86750755 -37325417 + (CTG)n Simple_repeat Simple_repeat 1 120 0 3 1246 316 178 121 48 chr9 86750870 86750994 -37325178 + RMER4B LTR ERVK 453 585 0 3 1246 231 204 0 0 chr9 86751391 86751445 -37324727 + CT-rich Low_complexity Low_complexity 2 55 0 3 1246 1819 165 114 19 chr9 86752005 86752381 -37323791 + MTC LTR MaLR 1 412 -9 3 1246 804 197 163 14 chr9 86752590 86752811 -37323361 + MTD LTR MaLR 150 403 -16 3 1246 252 0 0 0 chr9 86753246 86753274 -37322898 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1246 1134 192 14 5 chr9 86754490 86754704 -37321468 + B3 SINE B2 1 216 0 3 1246 714 82 0 0 chr9 86755750 86755848 -37320324 + (TCTCC)n Simple_repeat Simple_repeat 2 99 0 4 1246 536 301 0 34 chr9 86757715 86757863 -37318309 + B1F2 SINE Alu 5 147 -2 4 1246 233 104 12 83 chr9 86757870 86757954 -37318218 + A-rich Low_complexity Low_complexity 4 81 0 4 1246 21 0 0 0 chr9 86758197 86758218 -37317954 + AT_rich Low_complexity Low_complexity 1 21 0 4 1246 3214 68 0 5 chr9 86758278 86758676 -37317496 + MTA_Mm LTR MaLR 1 396 0 4 1246 444 245 18 135 chr9 86759623 86759845 -37316327 + B3A SINE B2 1 196 -2 4 1246 1194 62 0 0 chr9 86761103 86761248 -37314924 - B1_Mm SINE Alu 0 147 3 4 1246 1385 75 32 0 chr9 86761610 86761796 -37314376 + B2_Mm1a SINE B2 1 192 -1 4 1246 1466 189 139 11 chr9 86762983 86763342 -37312830 + MTD LTR MaLR 1 405 -14 4 1246 361 312 7 21 chr9 86765158 86765299 -37310873 + L2c LINE L2 3249 3387 0 4 1246 26 64 0 0 chr9 86765641 86765688 -37310484 + AT_rich Low_complexity Low_complexity 1 47 0 4 1246 384 286 0 28 chr9 86766071 86766179 -37309993 - PB1D10 SINE Alu 0 117 13 4 1246 282 239 182 41 chr9 86766767 86767215 -37308957 + L1MEd LINE L1 938 1453 -4772 4 1246 289 319 0 0 chr9 86769109 86769181 -37306991 + ID4_ SINE ID 3 74 -9 4 1246 186 43 0 0 chr9 86769200 86769223 -37306949 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1246 1180 61 0 7 chr9 86769223 86769371 -37306801 - B1_Mm SINE Alu 0 147 1 4 1247 536 197 78 16 chr9 86770079 86770208 -37305964 - ID_B1 SINE B4 -1 223 87 4 1247 315 0 0 0 chr9 86770700 86770735 -37305437 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1247 282 300 0 22 chr9 86771157 86771255 -37304917 + ID4_ SINE ID 1 92 -60 4 1247 717 102 0 0 chr9 86771850 86771958 -37304214 - B2_Mm2 SINE B2 -86 109 2 4 1247 22 0 0 0 chr9 86773155 86773177 -37302995 + AT_rich Low_complexity Low_complexity 1 22 0 4 1247 252 0 0 0 chr9 86773987 86774015 -37302157 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1247 248 286 8 40 chr9 86775188 86775312 -37300860 + C-rich Low_complexity Low_complexity 6 125 0 4 1247 535 283 151 22 chr9 86776398 86776890 -37299282 + L1ME1 LINE L1 5595 6134 -1861 4 1247 773 312 122 29 chr9 86776929 86777586 -37298586 + L1MD LINE L1 2320 3037 -3109 4 1247 729 190 146 66 chr9 86777654 86777880 -37298292 + RMER21B LTR ERV1 322 565 -277 4 1247 406 307 9 9 chr9 86777916 86778031 -37298141 + B1F1 SINE Alu 34 148 -1 4 1247 2662 176 7 104 chr9 86778097 86778232 -37297940 - RMER15 LTR ERVL -2 573 442 4 1247 1640 150 116 126 chr9 86778232 86778620 -37297552 + ORR1C2 LTR MaLR 1 384 0 4 1247 2662 176 7 104 chr9 86778620 86778844 -37297328 - RMER15 LTR ERVL -134 441 221 4 1247 3889 66 11 4 chr9 86778844 86779313 -37296859 + L1_Mus2 LINE L1 6095 6566 0 4 1247 2662 176 7 104 chr9 86779313 86779549 -37296623 - RMER15 LTR ERVL -355 220 35 4 1247 268 150 70 70 chr9 86779751 86779837 -37296335 + RMER15 LTR ERVL 45 130 -445 4 1247 769 281 38 21 chr9 86779906 86780142 -37296030 + RMER15 LTR ERVL 336 575 0 4 1247 693 260 164 5 chr9 86780538 86780758 -37295414 - RMER21B LTR ERV1 -289 553 299 4 1247 3101 127 12 148 chr9 86780802 86781405 -37294767 - RLTR28 LTR ERVL 0 524 4 4 1247 2092 140 138 39 chr9 86781462 86781924 -37294248 + RLTR28 LTR ERVL 3 510 -14 4 1247 225 0 0 0 chr9 86782442 86782467 -37293705 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1247 573 256 8 8 chr9 86782583 86782705 -37293467 + ID_B1 SINE B4 3 124 -100 4 1247 1246 68 7 0 chr9 86783135 86783281 -37292891 + B1_Mus1 SINE Alu 1 147 -1 4 1247 377 305 44 110 chr9 86783887 86784115 -37292057 - MLT1H1 LTR MaLR -195 360 148 4 1247 851 280 77 66 chr9 86784161 86784448 -37291724 + B4A SINE B4 3 292 0 4 1247 325 258 133 36 chr9 86784454 86784619 -37291553 + HAL1-3A_ME LINE L1 1978 2158 -700 4 1247 194 247 167 23 chr9 86784905 86785037 -37291135 - MIR3 SINE MIR -51 157 9 4 1247 1007 223 38 14 chr9 86785248 86785457 -37290715 + B3 SINE B2 3 216 0 4 1247 30311 116 14 35 chr9 86785482 86790773 -37285399 - L1Md_F LINE L1 -461 5422 261 4 1247 360 77 0 0 chr9 86790941 86790993 -37285179 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 4 1247 192 111 0 0 chr9 86791004 86791040 -37285132 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 4 1247 261 0 0 0 chr9 86791044 86791073 -37285099 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1247 1008 92 7 0 chr9 86791083 86791224 -37284948 - B1_Mm SINE Alu -1 146 5 4 1247 226 250 69 28 chr9 86791121 86791265 -37284907 - ORR1B1-int LTR MaLR -755 754 605 4 1247 366 298 60 22 chr9 86791547 86791732 -37284440 - RMER15 LTR ERVL 0 575 384 4 1247 250 212 0 20 chr9 86792013 86792114 -37284058 + CT-rich Low_complexity Low_complexity 2 100 0 4 1247 354 45 0 0 chr9 86792116 86792160 -37284012 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1247 901 226 34 10 chr9 86793146 86793352 -37282820 - B3 SINE B2 -4 212 2 4 1247 21 36 0 0 chr9 86795164 86795192 -37280980 + AT_rich Low_complexity Low_complexity 1 28 0 4 1247 942 94 0 8 chr9 86795338 86795349 -37280823 + B1_Mus1 SINE Alu 5 15 -133 4 1247 394 0 0 0 chr9 86795349 86795399 -37280773 - L1Md_T LINE L1 0 6582 6533 4 1247 942 94 2 19 chr9 86795399 86795542 -37280630 + B1_Mus1 SINE Alu 16 150 0 4 1247 28 0 0 0 chr9 86796859 86796887 -37279285 + AT_rich Low_complexity Low_complexity 1 28 0 4 1247 1159 137 26 90 chr9 86797024 86797257 -37278915 + URR1A DNA MER1_type 9 226 0 4 1247 183 42 0 0 chr9 86797490 86797514 -37278658 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1247 958 107 23 0 chr9 86797514 86797645 -37278527 - B1_Mus2 SINE Alu -12 135 2 4 1247 25 0 0 0 chr9 86798386 86798411 -37277761 + AT_rich Low_complexity Low_complexity 1 25 0 4 1247 941 240 49 5 chr9 86798411 86798616 -37277556 - B3 SINE B2 0 216 3 4 1247 290 307 83 28 chr9 86799271 86799415 -37276757 - RMER15 LTR ERVL -40 535 384 4 1247 317 255 34 128 chr9 86799483 86799600 -37276572 - L1M2 LINE L1 -658 5515 5410 4 1247 456 19 0 0 chr9 86799604 86799657 -37276515 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1247 355 317 0 0 chr9 86799798 86799880 -37276292 + B4A SINE B4 1 82 -210 4 1247 525 316 114 9 chr9 86799944 86800171 -37276001 + B4A SINE B4 42 292 0 4 1247 239 233 0 0 chr9 86800173 86800216 -37275956 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1247 246 81 0 0 chr9 86801361 86801398 -37274774 + (C)n Simple_repeat Simple_repeat 1 37 0 4 1247 3132 78 8 2 chr9 86801683 86802081 -37274091 + MTB LTR MaLR 1 400 0 4 1247 216 67 0 0 chr9 86802189 86802219 -37273953 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1247 1117 232 88 6 chr9 86802547 86802863 -37273309 - ORR1D2 LTR MaLR -20 374 44 4 1247 204 128 64 0 chr9 86803030 86803077 -37273095 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1247 434 174 144 128 chr9 86803405 86803530 -37272642 + B1_Mur2 SINE Alu 23 149 0 4 1247 483 209 0 0 chr9 86803726 86803942 -37272230 + (TG)n Simple_repeat Simple_repeat 1 216 0 4 1247 210 71 0 0 chr9 86804000 86804028 -37272144 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1247 32352 74 1 2 chr9 86804255 86809190 -37266982 - L1Md_F2 LINE L1 -3 6579 1649 4 1247 459 125 14 0 chr9 86809190 86809262 -37266910 - B1_Mus2 SINE Alu -61 86 14 4 1247 3180 35 0 0 chr9 86809264 86809610 -37266562 - ORR1A0 LTR MaLR 0 346 1 4 1247 1075 86 0 7 chr9 86809610 86809763 -37266409 - ORR1A0-int LTR MaLR 0 1792 1641 4 1247 2926 50 16 18 chr9 86809729 86810115 -37266057 - MT2_Mm LTR ERVL -108 385 1 4 1247 285 278 220 9 chr9 86810119 86810228 -37265944 + B4A SINE B4 88 219 -73 4 1247 644 160 19 19 chr9 86810130 86810238 -37265934 + PB1D9 SINE Alu 13 120 0 4 1247 197 62 40 40 chr9 86810238 86810288 -37265884 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 4 1247 295 368 0 0 chr9 86811862 86811938 -37264234 - ID2 SINE ID -4 79 4 4 1247 260 104 42 0 chr9 86811943 86811991 -37264181 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 4 1247 340 310 179 45 chr9 86813200 86813596 -37262576 + L3 LINE CR1 3776 4224 -265 4 1247 252 0 0 0 chr9 86814454 86814482 -37261690 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1247 396 143 0 0 chr9 86814482 86814566 -37261606 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1247 23 0 0 0 chr9 86815180 86815203 -37260969 + AT_rich Low_complexity Low_complexity 1 23 0 4 1247 2193 153 79 0 chr9 86815389 86815729 -37260443 + ORR1B2 LTR MaLR 1 367 0 4 1247 1285 48 0 7 chr9 86815863 86816011 -37260161 - B1_Mm SINE Alu 0 147 1 4 1247 594 151 5 38 chr9 86817599 86817785 -37258387 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 4 1247 465 234 6 18 chr9 86817756 86817926 -37258246 + (CATA)n Simple_repeat Simple_repeat 4 171 0 4 1247 301 264 136 103 chr9 86818257 86818602 -37257570 + ORR1E LTR MaLR 23 367 -7 4 1247 303 353 36 43 chr9 86818721 86818860 -37257312 + B4A SINE B4 46 183 -109 4 1247 971 224 45 20 chr9 86818983 86819183 -37256989 + B3 SINE B2 1 205 -11 4 1247 1417 261 75 20 chr9 86819455 86819664 -37256508 + MT2A LTR ERVL 1 232 -301 4 1247 180 0 0 0 chr9 86819664 86819684 -37256488 + (CTG)n Simple_repeat Simple_repeat 1 20 0 4 1247 1417 261 75 20 chr9 86819684 86819912 -37256260 + MT2A LTR ERVL 233 462 -71 4 1247 650 138 0 0 chr9 86819917 86820011 -37256161 + B1_Mur3 SINE Alu 1 94 -55 4 1247 246 32 0 0 chr9 86820029 86820060 -37256112 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1247 663 134 83 16 chr9 86820063 86820184 -37255988 + RMER1A Other Other 902 1030 0 5 1247 590 163 16 16 chr9 86820184 86820309 -37255863 + RCHARR1 DNA MER1_type 740 864 -110 5 1247 253 125 56 101 chr9 86820319 86820408 -37255764 + RCHARR1 DNA MER1_type 805 889 -85 5 1247 410 327 12 24 chr9 86821161 86821327 -37254845 + GA-rich Low_complexity Low_complexity 3 166 0 5 1247 583 270 21 41 chr9 86822028 86822232 -37253940 + MTD LTR MaLR 1 179 -240 5 1247 1375 111 26 21 chr9 86822239 86822433 -37253739 + B2_Mm2 SINE B2 1 195 0 5 1247 1135 127 0 0 chr9 86822631 86822797 -37253375 + L1_Mus4 LINE L1 6212 6377 -259 5 1247 590 265 20 11 chr9 86822797 86822971 -37253201 - MTE2b LTR MaLR -240 179 23 5 1247 1839 78 8 8 chr9 86822972 86823219 -37252953 + L1_Mus3 LINE L1 6392 6638 0 5 1247 3698 250 23 36 chr9 86823223 86824127 -37252045 + Lx7 LINE L1 6199 7090 -606 5 1247 487 297 114 70 chr9 86824159 86824659 -37251513 - L1ME3B LINE L1 -317 5847 5326 5 1247 645 229 16 0 chr9 86824736 86824858 -37251314 - RSINE1 SINE B4 -38 127 4 5 1247 399 298 144 66 chr9 86824858 86825103 -37251069 - L1ME3B LINE L1 -861 5285 5021 5 1247 904 125 50 29 chr9 86825103 86825243 -37250929 - B1_Mus2 SINE Alu -3 144 2 5 1247 399 298 144 66 chr9 86825243 86825331 -37250841 - L1ME3B LINE L1 -1126 5020 4926 5 1247 457 289 71 21 chr9 86825331 86825571 -37250601 - L1ME3B LINE L1 -2366 3780 3529 5 1247 239 329 0 24 chr9 86827188 86827272 -37248900 + (CACG)n Simple_repeat Simple_repeat 2 83 0 5 1247 2586 157 29 14 chr9 86828391 86828804 -37247368 + MTC LTR MaLR 3 421 0 5 1247 1053 154 0 13 chr9 86828951 86829102 -37247070 + B1_Mur4 SINE Alu 1 149 -1 5 1247 1219 284 77 3 chr9 86829498 86829851 -37246321 + MTEb LTR MaLR 1 379 0 5 1247 717 274 73 0 chr9 86829996 86830160 -37246012 - B4A SINE B4 -114 178 3 5 1247 1681 288 106 22 chr9 86830235 86830300 -37245872 - L1MA7 LINE L1 0 6291 6216 5 1247 279 0 0 0 chr9 86830300 86830331 -37245841 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1247 1681 288 106 22 chr9 86830331 86831017 -37245155 - L1MA7 LINE L1 -76 6215 5469 5 1247 411 78 0 0 chr9 86831017 86831081 -37245091 + (TAG)n Simple_repeat Simple_repeat 2 65 0 5 1247 1681 288 106 22 chr9 86831081 86831183 -37244989 - L1MA7 LINE L1 -823 5468 5365 5 1247 1385 46 0 93 chr9 86831276 86831469 -37244703 + L1_Mus1 LINE L1 6392 6566 -1 5 1247 188 230 62 47 chr9 86831534 86831598 -37244574 + MIRc SINE MIR 105 169 -99 5 1247 482 57 0 14 chr9 86831832 86831903 -37244269 + (TTA)n Simple_repeat Simple_repeat 2 71 0 5 1247 315 316 0 0 chr9 86831926 86832005 -37244167 + ID4 SINE ID 1 79 -4 5 1247 21 36 0 0 chr9 86832006 86832034 -37244138 + AT_rich Low_complexity Low_complexity 1 28 0 5 1247 347 233 88 11 chr9 86832128 86832219 -37243953 - B3 SINE B2 -78 138 41 5 1247 2180 108 3 3 chr9 86832219 86832525 -37243647 + ORR1A2 LTR MaLR 1 306 -21 5 1247 307 91 0 0 chr9 86832532 86832576 -37243596 - B3 SINE B2 -171 45 2 5 1247 213 297 0 15 chr9 86832637 86832702 -37243470 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1247 282 56 0 0 chr9 86833235 86833271 -37242901 + (TGG)n Simple_repeat Simple_repeat 1 36 0 5 1247 340 217 17 17 chr9 86833432 86833549 -37242623 + (TATATG)n Simple_repeat Simple_repeat 6 122 0 5 1247 823 288 94 6 chr9 86833675 86834014 -37242158 + L1MC1 LINE L1 3783 4155 -1991 5 1247 1917 143 12 134 chr9 86834018 86834082 -37242090 - ORR1B1 LTR MaLR 0 394 339 5 1247 876 132 0 44 chr9 86834082 86834241 -37241931 - L1Md_F3 LINE L1 0 6584 6433 5 1247 1917 143 12 134 chr9 86834241 86834579 -37241593 - ORR1B1 LTR MaLR -56 338 41 5 1247 290 228 91 121 chr9 86834585 86834750 -37241422 + L1MC1 LINE L1 4166 4325 -1821 5 1247 993 280 5 0 chr9 86834754 86834961 -37241211 + B3 SINE B2 1 208 -8 5 1247 590 143 0 9 chr9 86835051 86835157 -37241015 + (TA)n Simple_repeat Simple_repeat 1 105 0 5 1247 380 223 58 65 chr9 86835158 86835297 -37240875 + L1MC1 LINE L1 5715 5852 -481 5 1247 396 340 42 14 chr9 86835297 86835440 -37240732 + RSINE1 SINE B4 2 148 -17 5 1247 1145 297 47 24 chr9 86835507 86835972 -37240200 + L1MC1 LINE L1 5839 6314 -19 5 1247 39438 5 0 0 chr9 86836202 86841351 -37234821 + L1Md_A LINE L1 437 5586 -297 5 1247 9637 2 0 0 chr9 86841351 86842347 -37233825 + L1Md_A LINE L1 5587 6582 0 5 1247 240 35 0 0 chr9 86842492 86842521 -37233651 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1247 1104 230 0 10 chr9 86842783 86842981 -37233191 - B3 SINE B2 -19 197 2 5 1247 1712 211 70 106 chr9 86843009 86843841 -37232331 + RMER12 LTR ERVK 1 794 -1054 5 1247 1023 271 86 121 chr9 86843816 86844434 -37231738 + RMER12 LTR ERVK 699 1294 -28 5 1247 407 231 28 19 chr9 86845339 86845445 -37230727 - PB1D10 SINE Alu -8 109 3 5 1247 1369 77 0 6 chr9 86845450 86845633 -37230539 - B2_Mm2 SINE B2 -7 188 7 5 1247 211 340 35 77 chr9 86847567 86847774 -37228398 - MIR SINE MIR -41 227 28 5 1247 283 274 68 0 chr9 86847974 86848047 -37228125 - B1_Mur1 SINE Alu -6 143 66 5 1247 1433 134 18 0 chr9 86848763 86848980 -37227192 + URR1B DNA MER1_type 5 225 0 5 1247 324 342 8 0 chr9 86849777 86849894 -37226278 + MER94 DNA AcHobo 17 134 0 5 1247 227 79 0 26 chr9 86851354 86851393 -37224779 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1247 218 304 209 29 chr9 86851406 86851545 -37224627 - MIRb SINE MIR -92 176 13 5 1247 1208 68 0 13 chr9 86851746 86851895 -37224277 + B1_Mus2 SINE Alu 1 147 0 5 1247 195 69 0 0 chr9 86851895 86851924 -37224248 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1247 281 305 86 58 chr9 86852032 86852206 -37223966 + L3 LINE CR1 2725 2903 -1586 5 1247 238 255 0 19 chr9 86852574 86852626 -37223546 + polypurine Low_complexity Low_complexity 3 53 0 5 1247 485 259 52 0 chr9 86853109 86853225 -37222947 + MLT1A0 LTR MaLR 174 295 -70 5 1247 522 262 96 7 chr9 86853779 86853925 -37222247 + B4A SINE B4 1 159 -133 5 1247 183 42 0 0 chr9 86854572 86854596 -37221576 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1247 612 38 0 0 chr9 86854596 86854674 -37221498 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 5 1247 687 108 0 0 chr9 86854693 86854795 -37221377 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 1247 3830 62 0 13 chr9 86854844 86855318 -37220854 + L1Md_F2 LINE L1 6111 6578 -4 5 1247 254 274 0 0 chr9 86855331 86855393 -37220779 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1247 993 61 27 7 chr9 86855393 86855542 -37220630 + (TATATG)n Simple_repeat Simple_repeat 4 155 0 5 1247 288 313 72 29 chr9 86856126 86856264 -37219908 + MIRc SINE MIR 110 253 -15 5 1247 321 318 86 75 chr9 86856470 86856749 -37219423 + MLT1H LTR MaLR 107 388 -161 5 1247 249 237 92 0 chr9 86857500 86857576 -37218596 + RSINE1 SINE B4 43 125 -40 5 1247 468 0 0 0 chr9 86857590 86857642 -37218530 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1247 369 0 0 0 chr9 86857642 86857682 -37218490 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1247 188 122 0 39 chr9 86857877 86857928 -37218244 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 5 1247 504 0 0 0 chr9 86857931 86857987 -37218185 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1247 285 280 65 0 chr9 86857999 86858106 -37218066 - RSINE1 SINE B4 -40 125 12 5 1247 694 263 30 64 chr9 86858415 86858679 -37217493 - B4A SINE B4 -37 255 1 5 1247 324 0 0 0 chr9 86859299 86859335 -37216837 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1247 234 0 0 0 chr9 86859335 86859360 -37216812 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1247 216 265 20 0 chr9 86859814 86859863 -37216309 - ID4 SINE ID -3 80 31 5 1247 531 0 0 0 chr9 86859867 86859926 -37216246 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1247 1000 212 78 0 chr9 86860094 86860120 -37216052 - B3 SINE B2 -8 208 183 5 1247 222 37 0 0 chr9 86860120 86860147 -37216025 + (TATG)n Simple_repeat Simple_repeat 4 30 0 5 1247 1000 212 78 0 chr9 86860147 86860313 -37215859 - B3 SINE B2 -34 182 2 5 1247 902 299 37 15 chr9 86860393 86860665 -37215507 + B4A SINE B4 5 282 -10 5 1247 387 41 0 0 chr9 86860668 86860717 -37215455 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1247 315 0 0 0 chr9 86860915 86860950 -37215222 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1247 214 250 0 35 chr9 86861846 86861875 -37214297 + C-rich Low_complexity Low_complexity 29 56 0 5 1247 1067 58 17 23 chr9 86861875 86862052 -37214120 + (TTCTC)n Simple_repeat Simple_repeat 5 180 0 5 1247 214 250 0 35 chr9 86862052 86862080 -37214092 + C-rich Low_complexity Low_complexity 1 28 0 5 1247 1459 129 18 0 chr9 86862741 86862958 -37213214 - URR1B DNA MER1_type 0 225 5 5 1247 893 283 44 61 chr9 86864197 86864491 -37211681 - B4A SINE B4 -2 290 2 5 1247 189 74 0 0 chr9 86864503 86864530 -37211642 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1247 206 200 0 0 chr9 86864733 86864773 -37211399 + MIR SINE MIR 110 149 -59 5 1247 21 0 0 0 chr9 86865129 86865150 -37211022 + AT_rich Low_complexity Low_complexity 1 21 0 5 1247 4236 123 14 0 chr9 86865630 86865947 -37210225 - L1_Mm LINE L1 -829 5054 4738 5 1247 270 0 0 0 chr9 86865947 86865977 -37210195 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1247 4236 123 14 0 chr9 86865977 86866292 -37209880 - L1_Mm LINE L1 -1146 4737 4414 5 1247 8097 92 15 8 chr9 86866288 86867296 -37208876 + L1_Mus3 LINE L1 5061 6068 -570 5 1247 2782 98 10 57 chr9 86867296 86867698 -37208474 - RLTR9A2 LTR ERVK 0 383 1 5 1247 8097 58 22 9 chr9 86867698 86868253 -37207919 + L1_Mus3 LINE L1 6069 6638 0 5 1247 631 58 39 0 chr9 86869046 86869149 -37207023 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 5 1247 500 295 65 8 chr9 86869257 86869380 -37206792 + RSINE1 SINE B4 16 145 -20 5 1247 2915 282 46 43 chr9 86869866 86870764 -37205408 - Lx8 LINE L1 -360 7113 6214 5 1247 1650 227 50 28 chr9 86870768 86871130 -37205042 + ORR1D2 LTR MaLR 1 370 0 5 1247 405 241 221 15 chr9 86872973 86873141 -37203031 + MLT1A0 LTR MaLR 164 408 0 5 1247 1140 122 5 22 chr9 86873343 86873527 -37202645 - L1_Mur2 LINE L1 -622 5255 5075 5 1247 719 182 167 26 chr9 86873530 86873722 -37202450 + Lx5 LINE L1 6832 7050 0 5 1247 21 0 0 0 chr9 86874442 86874463 -37201709 + AT_rich Low_complexity Low_complexity 1 21 0 5 1247 351 260 186 15 chr9 86874797 86875013 -37201159 + HAL1-3A_ME LINE L1 2285 2438 -420 6 1247 373 330 28 22 chr9 86875317 86875497 -37200675 - MIR SINE MIR -61 201 21 6 1247 429 20 0 0 chr9 86875667 86875717 -37200455 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1247 189 107 0 0 chr9 86875799 86875827 -37200345 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1247 2089 139 74 23 chr9 86875906 86876091 -37200081 + RMER17C LTR ERVK 1 190 -220 6 1247 408 82 0 0 chr9 86876091 86876152 -37200020 + (TCTCTG)n Simple_repeat Simple_repeat 4 64 0 6 1247 2089 139 74 23 chr9 86876152 86876356 -37199816 + RMER17C LTR ERVK 191 409 -1 6 1247 279 79 0 0 chr9 86876970 86877008 -37199164 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 6 1247 8860 96 16 28 chr9 86877061 86878951 -37197221 - Lx3C LINE L1 -7 6969 5107 6 1247 264 217 0 48 chr9 86878956 86879019 -37197153 + ORR1D1 LTR MaLR 311 370 -4 6 1247 380 284 32 0 chr9 86879025 86879120 -37197052 + RSINE1 SINE B4 54 151 -14 6 1247 286 311 48 19 chr9 86880759 86880864 -37195308 + MER3 DNA MER1_type 93 200 -9 6 1247 279 298 24 12 chr9 86881179 86881264 -37194908 - B4A SINE B4 -198 94 9 6 1247 270 106 0 0 chr9 86882492 86882539 -37193633 + (A)n Simple_repeat Simple_repeat 1 47 0 6 1247 221 204 23 0 chr9 86882789 86882833 -37193339 + GA-rich Low_complexity Low_complexity 1 45 0 6 1247 206 228 0 17 chr9 86883742 86883800 -37192372 + GA-rich Low_complexity Low_complexity 1 57 0 6 1247 292 251 307 6 chr9 86884276 86884452 -37191720 - L1MB5 LINE L1 -100 6084 5856 6 1247 772 251 112 93 chr9 86884584 86885068 -37191104 - L1MB5 LINE L1 -325 5849 5357 6 1247 222 219 0 0 chr9 86886951 86886992 -37189180 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1247 682 309 99 26 chr9 86887673 86887945 -37188227 - B4A SINE B4 0 292 1 6 1247 397 305 85 15 chr9 86888349 86888479 -37187693 + ID_B1 SINE B4 83 221 -3 6 1247 628 45 0 22 chr9 86888862 86888952 -37187220 + (GA)n Simple_repeat Simple_repeat 2 89 0 6 1247 788 50 10 0 chr9 86889514 86889615 -37186557 - B1_Mm SINE Alu -43 104 3 6 1247 208 222 0 0 chr9 86889798 86889843 -37186329 + GA-rich Low_complexity Low_complexity 1 45 0 6 1247 248 286 14 0 chr9 86890075 86890145 -37186027 + GA-rich Low_complexity Low_complexity 2 72 0 6 1247 1947 225 87 47 chr9 86890198 86890725 -37185447 + RMER15 LTR ERVL 28 575 0 6 1247 889 199 187 32 chr9 86890864 86891051 -37185121 - B3 SINE B2 0 216 1 6 1247 1541 54 16 16 chr9 86891170 86891357 -37184815 - B2_Mm2 SINE B2 -8 187 1 6 1247 1142 276 86 0 chr9 86892812 86893149 -37183023 - MTE2b LTR MaLR -13 366 1 6 1247 605 212 26 9 chr9 86893193 86893307 -37182865 - B3A SINE B2 -82 116 1 6 1247 798 260 57 32 chr9 86893640 86893922 -37182250 + Lx5 LINE L1 6086 6374 -676 6 1247 1151 298 67 58 chr9 86893913 86894480 -37181692 + Lx5 LINE L1 6479 7050 0 6 1247 189 107 0 0 chr9 86895366 86895394 -37180778 + (CATATA)n Simple_repeat Simple_repeat 1 28 0 6 1247 372 118 0 0 chr9 86895588 86895656 -37180516 + (CTA)n Simple_repeat Simple_repeat 2 69 0 6 1247 244 150 16 32 chr9 86895658 86895720 -37180452 + CT-rich Low_complexity Low_complexity 3 63 0 6 1247 234 353 29 0 chr9 86896109 86896177 -37179995 + MIR SINE MIR 6 75 -187 6 1247 393 75 0 0 chr9 86896284 86896337 -37179835 + (TCC)n Simple_repeat Simple_repeat 2 54 0 6 1247 691 336 47 56 chr9 86896365 86896610 -37179562 + MT2A LTR ERVL 1 244 -289 6 1247 525 32 0 0 chr9 86896610 86896673 -37179499 + (ATG)n Simple_repeat Simple_repeat 1 63 0 6 1247 691 336 47 56 chr9 86896673 86896853 -37179319 + MT2A LTR ERVL 245 422 -111 6 1247 294 194 0 0 chr9 86896892 86896959 -37179213 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 6 1247 1859 140 18 60 chr9 86896984 86897319 -37178853 + ORR1A4 LTR MaLR 1 321 -8 6 1247 338 0 0 23 chr9 86897320 86897363 -37178809 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1247 738 328 74 30 chr9 86897465 86897804 -37178368 - ORR1E LTR MaLR -5 354 1 6 1247 225 241 9 69 chr9 86898060 86898176 -37177996 + L1MC4 LINE L1 7691 7799 -243 6 1247 234 105 0 0 chr9 86898192 86898230 -37177942 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1247 479 301 20 53 chr9 86898244 86898490 -37177682 + RLTR15 LTR ERVK 109 346 -13 6 1247 781 171 141 22 chr9 86898483 86898668 -37177504 - MT2A LTR ERVL -320 213 7 6 1247 438 94 0 0 chr9 86898993 86899057 -37177115 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1247 814 286 45 8 chr9 86899568 86899811 -37176361 + B4A SINE B4 3 254 -38 6 1247 402 21 0 0 chr9 86899946 86899993 -37176179 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1247 312 48 0 0 chr9 86899993 86900034 -37176138 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1247 287 269 70 70 chr9 86900038 86900138 -37176034 - B4A SINE B4 -81 211 112 6 1247 336 155 38 22 chr9 86900229 86900309 -37175863 - B4A SINE B4 -33 259 178 6 1247 341 288 53 18 chr9 86900397 86900510 -37175662 - MLT1I LTR MaLR -231 180 64 6 1248 383 282 191 11 chr9 86900865 86901148 -37175024 + Charlie1 DNA MER1_type 2333 2666 -115 6 1248 22 0 0 0 chr9 86901219 86901241 -37174931 + AT_rich Low_complexity Low_complexity 1 22 0 6 1248 278 390 0 9 chr9 86901718 86901824 -37174348 - MLT1I LTR MaLR -499 111 7 6 1248 217 280 119 63 chr9 86902394 86902568 -37173604 + L2c LINE L2 3107 3280 -107 6 1248 1353 113 107 5 chr9 86902568 86902773 -37173399 + URR1A DNA MER1_type 1 226 0 6 1248 192 301 55 141 chr9 86902773 86902888 -37173284 + L2c LINE L2 3265 3371 -4 6 1248 3138 104 68 0 chr9 86904216 86904656 -37171516 + Lx3_Mus LINE L1 6524 6993 -16 6 1248 677 251 77 22 chr9 86904666 86904849 -37171323 - B3A SINE B2 -5 193 1 6 1248 233 278 53 0 chr9 86905835 86905916 -37170256 + L2c LINE L2 3338 3425 -1 6 1248 252 0 0 0 chr9 86906124 86906152 -37170020 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1248 382 266 0 84 chr9 86906162 86906281 -37169891 - RSINE1 SINE B4 0 165 57 6 1248 216 86 0 0 chr9 86906504 86906539 -37169633 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1248 195 42 0 0 chr9 86908875 86908899 -37167273 + (TGG)n Simple_repeat Simple_repeat 2 25 0 6 1248 684 244 38 6 chr9 86908916 86909073 -37167099 - RSINE1 SINE B4 0 165 4 6 1248 22 0 0 0 chr9 86910249 86910271 -37165901 + GC_rich Low_complexity Low_complexity 1 22 0 6 1248 282 173 0 0 chr9 86911709 86911784 -37164388 + T-rich Low_complexity Low_complexity 1 75 0 6 1248 1209 192 5 14 chr9 86912026 86912237 -37163935 - B3 SINE B2 -5 211 3 6 1248 246 307 76 45 chr9 86913499 86913697 -37162475 - Tigger15a DNA TcMar -65 650 447 6 1248 21 89 0 0 chr9 86914691 86914747 -37161425 + AT_rich Low_complexity Low_complexity 1 56 0 6 1248 287 274 14 14 chr9 86915634 86915708 -37160464 + PB1D10 SINE Alu 23 96 -21 6 1248 1251 241 96 9 chr9 86918639 86918962 -37157210 + ORR1D2 LTR MaLR 20 370 0 6 1248 220 284 42 18 chr9 86919209 86919291 -37156881 - L2c LINE L2 -76 3311 3202 6 1248 581 252 184 13 chr9 86920432 86920665 -37155507 + Tigger7 DNA MER2_type 243 515 -1976 6 1248 183 242 38 133 chr9 86921058 86921163 -37155009 + L3 LINE CR1 819 913 -3576 6 1248 247 325 84 36 chr9 86921113 86921196 -37154976 - MIRc SINE MIR -178 90 4 6 1248 23 33 0 0 chr9 86921331 86921361 -37154811 + AT_rich Low_complexity Low_complexity 1 30 0 6 1248 387 0 0 0 chr9 86921598 86921641 -37154531 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6 1248 209 229 21 0 chr9 86922285 86922333 -37153839 + (TATG)n Simple_repeat Simple_repeat 4 52 0 6 1248 341 268 140 30 chr9 86922393 86922493 -37153679 + B4A SINE B4 180 290 -2 6 1248 468 266 149 51 chr9 86923039 86923489 -37152683 - Charlie1b DNA MER1_type -5 518 20 6 1248 228 244 0 0 chr9 86923815 86923856 -37152316 + LTR40b LTR ERVL 23 63 -456 6 1248 532 351 62 25 chr9 86923890 86924214 -37151958 + LTR40b LTR ERVL 123 458 -4 6 1248 200 139 28 0 chr9 86925951 86925987 -37150185 + T-rich Low_complexity Low_complexity 3 39 0 6 1248 567 215 37 0 chr9 86926764 86926871 -37149301 + B1F SINE Alu 7 117 -32 6 1248 325 274 40 37 chr9 86927720 86927840 -37148332 - PB1D7 SINE Alu -7 113 1 6 1248 267 333 66 42 chr9 86928543 86928709 -37147463 - LTR45 LTR ERV1 -15 510 341 6 1248 333 68 0 0 chr9 86928812 86928856 -37147316 + (TCC)n Simple_repeat Simple_repeat 3 46 0 6 1248 510 270 11 163 chr9 86928856 86929046 -37147126 - ID_B1 SINE B4 -41 183 23 6 1248 289 286 67 58 chr9 86930459 86930563 -37145609 + MIRb SINE MIR 5 109 -159 6 1248 230 268 170 30 chr9 86930619 86930719 -37145453 + B4A SINE B4 6 119 -173 6 1248 270 106 0 0 chr9 86930993 86931040 -37145132 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1248 268 300 74 12 chr9 86932375 86932456 -37143716 + PB1D10 SINE Alu 1 86 -31 6 1248 414 0 0 0 chr9 86933037 86933083 -37143089 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1248 270 136 0 0 chr9 86933162 86933206 -37142966 + (TTC)n Simple_repeat Simple_repeat 2 45 0 6 1248 766 121 6 108 chr9 86933220 86933396 -37142776 - RMER12 LTR ERVK -555 767 610 6 1248 191 367 38 0 chr9 86934488 86934567 -37141605 - L3 LINE CR1 -865 3624 3543 6 1248 237 190 69 0 chr9 86935525 86935583 -37140589 - L1ME4a LINE L1 0 6124 6063 6 1248 1319 34 0 0 chr9 86936224 86936372 -37139800 - B1_Mus1 SINE Alu 0 148 1 6 1248 235 304 25 0 chr9 86936379 86936458 -37139714 - MIR SINE MIR -55 207 127 6 1248 230 189 0 0 chr9 86937903 86937940 -37138232 - tRNA-Arg-AGA tRNA tRNA -36 40 4 6 1248 361 275 54 77 chr9 86938411 86938541 -37137631 - RSINE1 SINE B4 -7 158 32 6 1248 3369 135 90 83 chr9 86938541 86939285 -37136887 + RMER6A LTR ERVK 1 749 -7 6 1248 219 194 0 0 chr9 86939293 86939329 -37136843 - RSINE1 SINE B4 -128 37 2 6 1248 806 132 62 0 chr9 86939589 86939718 -37136454 + URR1A DNA MER1_type 79 215 -11 6 1248 923 246 37 5 chr9 86939805 86939993 -37136179 - B3A SINE B2 -4 194 1 7 1248 1575 316 92 43 chr9 86940692 86941501 -37134671 + Lx8 LINE L1 6437 7284 -189 7 1248 281 81 0 0 chr9 86942493 86942530 -37133642 + L1Md_F2 LINE L1 6513 6549 -33 7 1248 1169 78 0 0 chr9 86942530 86942672 -37133500 + B1_Mus2 SINE Alu 5 146 -1 7 1248 216 0 0 0 chr9 86942813 86942837 -37133335 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 1248 323 113 18 23 chr9 86942852 86942916 -37133256 - B2_Mm2 SINE B2 -107 109 48 7 1248 1403 90 11 0 chr9 86942966 86943144 -37133028 - B2_Mm1t SINE B2 -13 180 1 7 1248 423 0 0 0 chr9 86944130 86944177 -37131995 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1248 202 286 0 0 chr9 86944981 86945030 -37131142 + GA-rich Low_complexity Low_complexity 3 51 0 7 1248 654 126 0 0 chr9 86946006 86946109 -37130063 + (TTTTC)n Simple_repeat Simple_repeat 3 105 0 7 1248 1110 88 0 0 chr9 86946123 86946271 -37129901 - B1_Mus1 SINE Alu 0 148 1 7 1248 30 0 0 0 chr9 86946834 86946864 -37129308 + AT_rich Low_complexity Low_complexity 1 30 0 7 1248 323 336 51 68 chr9 86948609 86948845 -37127327 + MER115 DNA Tip100 9 240 -453 7 1248 338 299 28 28 chr9 86949028 86949169 -37127003 + MER115 DNA Tip100 552 692 -1 7 1248 949 181 43 24 chr9 86949169 86949374 -37126798 - URR1B DNA MER1_type -16 209 1 7 1248 21 0 0 0 chr9 86950292 86950313 -37125859 + AT_rich Low_complexity Low_complexity 1 21 0 7 1248 23 68 0 0 chr9 86950411 86950455 -37125717 + AT_rich Low_complexity Low_complexity 1 44 0 7 1248 204 40 0 0 chr9 86954847 86954872 -37121300 + (CTCTG)n Simple_repeat Simple_repeat 2 26 0 7 1248 9360 72 13 0 chr9 86955032 86957005 -37119167 + L1_Mus2 LINE L1 4594 6566 0 7 1248 473 317 0 0 chr9 86957120 86957243 -37118929 + B3 SINE B2 94 216 0 7 1248 21 0 0 0 chr9 86957245 86957266 -37118906 + AT_rich Low_complexity Low_complexity 1 21 0 7 1248 1351 135 18 9 chr9 86958035 86958259 -37117913 + URR1A DNA MER1_type 1 226 0 7 1248 378 107 0 0 chr9 86958441 86958497 -37117675 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1248 814 206 57 29 chr9 86958686 86958896 -37117276 - B3 SINE B2 0 216 1 7 1248 183 42 0 0 chr9 86958901 86958925 -37117247 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 7 1248 180 0 0 0 chr9 86958933 86958953 -37117219 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1248 2024 126 3 0 chr9 86959014 86959332 -37116840 - ORR1A2 LTR MaLR -8 319 1 7 1248 280 292 0 0 chr9 86959386 86959451 -37116721 - L1M5 LINE L1 -297 5827 5763 7 1248 867 124 0 0 chr9 86960242 86960371 -37115801 - B1_Mus1 SINE Alu -19 129 1 7 1248 21 82 0 0 chr9 86962210 86962259 -37113913 + AT_rich Low_complexity Low_complexity 1 49 0 7 1248 349 173 148 0 chr9 86962904 86962985 -37113187 - PB1D9 SINE Alu -9 111 19 7 1248 420 319 44 22 chr9 86963235 86963418 -37112754 + MER2 DNA MER2_type 142 328 -17 7 1248 32733 83 22 10 chr9 86963545 86969038 -37107134 + L1Md_F2 LINE L1 31 5585 -298 7 1248 7723 70 8 4 chr9 86969039 86970030 -37106142 + L1Md_F2 LINE L1 5587 6581 -1 7 1248 336 238 25 0 chr9 86970252 86970332 -37105840 + PB1D10 SINE Alu 9 90 -27 7 1248 247 328 0 0 chr9 86970345 86970409 -37105763 + ID4_ SINE ID 2 65 -18 7 1248 312 327 37 19 chr9 86970712 86970874 -37105298 + L1MC5 LINE L1 7001 7165 -796 7 1248 1301 20 0 0 chr9 86971117 86971264 -37104908 + B1_Mm SINE Alu 1 147 0 7 1248 407 217 191 0 chr9 86972288 86972403 -37103769 - B1F2 SINE Alu -3 146 10 7 1248 258 275 63 42 chr9 86972321 86972416 -37103756 - MT2B LTR ERVL -344 257 161 7 1248 265 273 88 29 chr9 86972439 86972541 -37103631 + RSINE1 SINE B4 58 165 0 7 1248 33 25 0 0 chr9 86973528 86973568 -37102604 + AT_rich Low_complexity Low_complexity 1 40 0 7 1248 286 97 16 16 chr9 86973586 86973649 -37102523 - RMER17C LTR ERVK -7 403 341 7 1248 318 202 91 0 chr9 86973653 86973752 -37102420 + L1M4 LINE L1 5711 5818 -356 7 1248 402 234 149 0 chr9 86973752 86973859 -37102313 - RSINE1 SINE B4 -39 126 4 7 1248 343 213 104 0 chr9 86974102 86974206 -37101966 + B1F SINE Alu 12 136 -13 7 1248 519 296 58 111 chr9 86974408 86974728 -37101444 + MT2A LTR ERVL 192 494 -39 7 1248 378 0 0 0 chr9 86974728 86974770 -37101402 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1248 519 296 58 111 chr9 86974770 86974810 -37101362 + MT2A LTR ERVL 495 533 0 7 1248 4094 39 2 0 chr9 86975055 86975538 -37100634 - L1Md_A LINE L1 0 6582 6099 7 1248 1236 41 0 0 chr9 86975538 86975685 -37100487 + L1Md_T LINE L1 5962 6108 -474 7 1248 418 103 75 75 chr9 86975750 86975844 -37100328 - RLTR28B LTR ERVL 0 524 431 7 1248 436 92 92 0 chr9 86975824 86975911 -37100261 - RLTR28B LTR ERVL -332 149 55 7 1248 750 134 45 162 chr9 86975891 86976113 -37100059 + RLTR20B2 LTR ERVK 365 560 0 7 1248 252 306 35 0 chr9 86976304 86976389 -37099783 - B1F1 SINE Alu -50 99 12 7 1248 540 266 12 54 chr9 86976507 86976536 -37099636 + ID_B1 SINE B4 65 224 0 7 1248 923 110 0 14 chr9 86976536 86976674 -37099498 + B1_Mm SINE Alu 12 147 0 7 1248 312 27 0 0 chr9 86976675 86976712 -37099460 + (GGA)n Simple_repeat Simple_repeat 2 38 0 7 1248 440 0 36 0 chr9 86976712 86976767 -37099405 + (GAAAA)n Simple_repeat Simple_repeat 4 60 0 7 1248 322 119 376 0 chr9 86977860 86977961 -37098211 + RLTR28B LTR ERVL 6 144 -337 7 1248 252 259 130 26 chr9 86978386 86978501 -37097671 + RMER12 LTR ERVK 724 850 -472 7 1248 488 311 122 32 chr9 86978566 86978977 -37097195 - L1M5 LINE L1 -2367 3779 3332 7 1248 311 235 14 14 chr9 86978978 86979047 -37097125 + ID4_ SINE ID 2 70 -13 7 1248 3592 92 32 32 chr9 86979218 86979754 -37096418 - Lx3B LINE L1 -4 6969 6434 7 1248 3295 89 2 36 chr9 86979786 86980252 -37095920 + L1_Mur1 LINE L1 5341 5790 -96 7 1248 1158 75 7 0 chr9 86980476 86980623 -37095549 + B1_Mus1 SINE Alu 1 148 0 7 1248 1020 226 10 0 chr9 86980746 86980954 -37095218 - B3 SINE B2 -6 210 1 7 1248 26 0 0 0 chr9 86981603 86981629 -37094543 + AT_rich Low_complexity Low_complexity 1 26 0 7 1248 1072 202 46 18 chr9 86982210 86982427 -37093745 - URR1B DNA MER1_type 0 225 3 7 1248 435 144 43 0 chr9 86983382 86983521 -37092651 + CT-rich Low_complexity Low_complexity 2 146 0 7 1248 340 309 180 7 chr9 86983786 86983936 -37092236 + ID_B1 SINE B4 3 178 -46 7 1248 229 192 0 0 chr9 86984332 86984384 -37091788 + CT-rich Low_complexity Low_complexity 1 52 0 7 1248 1282 137 81 30 chr9 86985104 86985338 -37090834 - RMER1B Other Other -3 1063 818 7 1248 236 190 182 40 chr9 86985439 86985565 -37090607 - L1MA7 LINE L1 -41 6271 6128 7 1248 246 394 0 0 chr9 86985573 86985667 -37090505 + (CGTG)n Simple_repeat Simple_repeat 1 94 0 7 1248 787 300 12 6 chr9 86985683 86985925 -37090247 - B4A SINE B4 -20 272 29 7 1248 926 283 209 10 chr9 86985991 86986580 -37089592 - L1MA7 LINE L1 -269 6022 5317 7 1248 243 0 0 0 chr9 86986600 86986627 -37089545 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1248 992 116 0 0 chr9 86986627 86986765 -37089407 - B1_Mus1 SINE Alu -10 138 1 7 1248 2961 55 58 3 chr9 86986896 86987278 -37088894 - MTB_Mm LTR MaLR -4 403 1 7 1248 273 295 89 2 chr9 86987541 86987728 -37088444 - L1MA7 LINE L1 -849 5291 5081 7 1248 458 260 56 16 chr9 86988008 86988133 -37088039 + RMER10B LTR ERVL 269 398 0 7 1248 458 275 48 21 chr9 86988173 86988359 -37087813 - L1MA7 LINE L1 -1062 5081 4891 7 1248 640 267 84 17 chr9 86988359 86988610 -37087562 + MT2A LTR ERVL 206 601 0 7 1248 234 91 0 0 chr9 86988860 86988893 -37087279 + (TTA)n Simple_repeat Simple_repeat 2 34 0 7 1248 520 271 0 0 chr9 86993210 86993332 -37082840 - B1_Mur1 SINE Alu -25 124 3 7 1248 186 43 0 0 chr9 86993627 86993650 -37082522 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1248 3010 47 0 0 chr9 86993650 86994014 -37082158 - IAPLTR1_Mm LTR ERVK -3 364 1 7 1248 54330 16 8 1 chr9 86994014 87000000 -37076172 - IAPEz-int LTR ERVK 0 6481 450 7 1248 3262 27 102 0 chr9 87000000 87000401 -37075771 - IAPEz-int LTR ERVK -6032 449 8 1 1248 3044 46 0 0 chr9 87000401 87000768 -37075404 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1248 36188 43 0 3 chr9 87000882 87006195 -37069977 + L1Md_T LINE L1 196 5589 -297 2 1248 8623 30 0 3 chr9 87006195 87007193 -37068979 + L1Md_T LINE L1 5590 6584 -1 2 1248 301 199 66 0 chr9 87007693 87007859 -37068313 + (TA)n Simple_repeat Simple_repeat 2 178 0 3 1248 1033 279 82 76 chr9 87008112 87008483 -37067689 + RMER5 LTR ERV1 28 429 -105 4 1248 1155 68 0 7 chr9 87008483 87008632 -37067540 + B1_Mus1 SINE Alu 1 148 0 5 1248 294 29 0 0 chr9 87008642 87008677 -37067495 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1248 1033 279 82 76 chr9 87008677 87008779 -37067393 + RMER5 LTR ERV1 430 515 -19 4 1248 541 274 146 57 chr9 87008858 87008984 -37067188 + L1MA5A LINE L1 5135 5271 -869 7 1248 1189 68 0 0 chr9 87008984 87009131 -37067041 + B1_Mus1 SINE Alu 2 148 0 8 1248 541 261 134 106 chr9 87009131 87009233 -37066939 + L1MA5A LINE L1 5213 5283 -564 7 1248 357 109 0 0 chr9 87009233 87009288 -37066884 + (CAAT)n Simple_repeat Simple_repeat 2 56 0 9 1248 541 269 128 95 chr9 87009288 87009761 -37066411 + L1MA5A LINE L1 5284 5880 -417 7 1248 786 151 183 5 chr9 87011856 87012042 -37064130 + URR1B DNA MER1_type 1 219 -6 1 1248 330 253 33 46 chr9 87011906 87012059 -37064113 - CYRA11_Mm Unknown Y-chromosome -306 311 161 1 1248 716 307 106 43 chr9 87012368 87012932 -37063240 - L1MA10 LINE L1 -7 6327 5728 1 1248 986 262 53 78 chr9 87012932 87013329 -37062843 - MLT1A1 LTR MaLR 0 408 22 1 1248 189 107 0 0 chr9 87014353 87014381 -37061791 + (GGA)n Simple_repeat Simple_repeat 2 29 0 1 1248 2588 144 15 15 chr9 87014675 87015140 -37061032 + RMER20A LTR ERVK 52 516 0 1 1248 672 200 273 0 chr9 87015171 87015336 -37060836 - B3 SINE B2 -6 210 1 1 1248 736 287 13 51 chr9 87016263 87016498 -37059674 + B4A SINE B4 49 274 -18 1 1248 875 151 6 0 chr9 87016577 87016736 -37059436 + CT-rich Low_complexity Low_complexity 4 163 0 1 1248 263 218 0 0 chr9 87016740 87016795 -37059377 - PB1D9 SINE Alu -65 55 1 1 1248 230 300 0 0 chr9 87016795 87016809 -37059363 - B4A SINE B4 -151 140 72 2 1248 294 333 146 20 chr9 87016970 87017224 -37058948 - L1MC LINE L1 -2228 5654 5369 2 1248 203 130 20 61 chr9 87017950 87017999 -37058173 + T-rich Low_complexity Low_complexity 2 48 0 2 1248 278 367 0 18 chr9 87018007 87018118 -37058054 - RSINE1 SINE B4 -4 161 53 2 1248 323 341 16 0 chr9 87018691 87018820 -37057352 - ID_B1 SINE B4 -15 209 79 2 1248 274 224 17 17 chr9 87018933 87018992 -37057180 + ORR1E LTR MaLR 1 59 -300 2 1248 180 0 0 0 chr9 87019085 87019105 -37057067 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1248 531 0 0 0 chr9 87019109 87019168 -37057004 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1248 284 263 0 26 chr9 87019724 87019802 -37056370 + MTE2b LTR MaLR 276 351 -28 2 1248 1066 272 128 0 chr9 87021132 87021467 -37054705 + MTE2b LTR MaLR 2 379 0 2 1248 306 323 30 23 chr9 87023081 87023214 -37052958 - B1_Mur3 SINE Alu -7 142 9 3 1248 486 202 0 11 chr9 87023400 87023495 -37052677 - B1_Mur2 SINE Alu -55 94 1 3 1248 444 216 35 63 chr9 87023669 87023812 -37052360 - B1_Mur2 SINE Alu 0 149 11 3 1248 821 262 69 19 chr9 87025008 87025269 -37050903 + B4A SINE B4 8 281 -11 3 1248 259 250 119 45 chr9 87025408 87025542 -37050630 + MIR SINE MIR 80 223 -39 3 1248 318 348 60 16 chr9 87026319 87026567 -37049605 - LTR80B LTR ERVL -244 340 82 3 1248 1848 169 64 25 chr9 87026568 87026927 -37049245 - ORR1D1 LTR MaLR -1 373 1 3 1248 370 226 52 0 chr9 87028188 87028330 -37047842 + (CACCAT)n Simple_repeat Simple_repeat 1 149 0 3 1248 395 316 26 0 chr9 87028805 87028922 -37047250 - RMER10B LTR ERVL -10 388 269 3 1248 233 250 0 0 chr9 87029378 87029430 -37046742 + PB1D10 SINE Alu 46 97 -20 3 1248 200 188 0 0 chr9 87030001 87030033 -37046139 + polypyrimidine Low_complexity Low_complexity 4 35 0 4 1248 936 108 0 0 chr9 87030098 87030237 -37045935 + (TG)n Simple_repeat Simple_repeat 2 140 0 4 19 1093 98 86 11 chr9 87031640 87031815 -37044357 - B2_Mm2 SINE B2 -7 188 1 4 1249 3604 134 65 22 chr9 87032554 87033140 -37043032 - RMER19C LTR ERVK 0 611 1 4 1249 840 270 104 66 chr9 87033331 87033696 -37042476 - MLT1B LTR MaLR -3 387 9 4 1249 183 318 91 0 chr9 87034720 87034808 -37041364 + MIR SINE MIR 50 145 -117 4 1249 7807 63 0 1 chr9 87036018 87036992 -37039180 + L1Md_F2 LINE L1 4613 5585 -298 4 1249 8307 43 0 6 chr9 87036993 87037995 -37038177 + L1Md_F2 LINE L1 5587 6582 0 4 1249 417 196 272 10 chr9 87038126 87038229 -37037943 - B1_Mus1 SINE Alu -18 130 1 4 1249 333 0 0 0 chr9 87038279 87038316 -37037856 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1249 236 100 25 0 chr9 87038419 87038459 -37037713 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 4 1249 700 203 108 0 chr9 87041328 87041476 -37034696 + B3 SINE B2 2 165 -51 5 1249 637 253 168 21 chr9 87041473 87041711 -37034461 + B4A SINE B4 20 292 0 5 1249 198 0 0 0 chr9 87041716 87041738 -37034434 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1249 396 0 0 0 chr9 87041738 87041782 -37034390 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1249 251 299 68 11 chr9 87041799 87041887 -37034285 + PB1D7 SINE Alu 21 113 -7 5 1249 489 58 0 0 chr9 87041913 87041982 -37034190 + (CGAGG)n Simple_repeat Simple_repeat 2 70 0 5 1249 1358 47 12 0 chr9 87041983 87042305 -37033867 + (GAGAA)n Simple_repeat Simple_repeat 1 325 0 5 1249 1233 48 0 0 chr9 87043987 87044132 -37032040 + B1_Mus2 SINE Alu 2 146 -1 5 1249 336 202 15 162 chr9 87044741 87044754 -37031418 - ORR1D2 LTR MaLR -16 363 353 5 1249 189 0 0 0 chr9 87044754 87044775 -37031397 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1249 936 232 58 116 chr9 87044775 87045127 -37031045 - ORR1D2 LTR MaLR -27 352 1 5 1249 2992 117 82 26 chr9 87045245 87045782 -37030390 - RMER15 LTR ERVL 0 575 9 6 1249 876 196 196 0 chr9 87045928 87046107 -37030065 - B3 SINE B2 -1 215 2 6 1249 233 146 55 31 chr9 87046183 87046310 -37029862 + (TCTG)n Simple_repeat Simple_repeat 1 130 0 6 1249 351 207 108 41 chr9 87047904 87048040 -37028132 - ORR1E LTR MaLR -51 328 159 6 1249 351 0 0 0 chr9 87048054 87048093 -37028079 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1249 342 0 0 0 chr9 87048093 87048130 -37028042 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1249 397 226 0 138 chr9 87048174 87048297 -37027875 - ORR1E LTR MaLR -229 130 25 6 1249 519 17 0 0 chr9 87048576 87048636 -37027536 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1249 418 175 130 46 chr9 87048636 87048744 -37027428 - RSINE1 SINE B4 -41 124 8 6 1249 703 299 97 53 chr9 87048752 87049094 -37027078 - MLT1A0 LTR MaLR -4 361 5 6 1249 226 220 50 17 chr9 87049261 87049321 -37026851 - L1_Mur2 LINE L1 -4299 1578 1517 6 1249 521 214 10 0 chr9 87049757 87049855 -37026317 + URR1B DNA MER1_type 1 99 -126 7 1249 38792 31 1 1 chr9 87050209 87057304 -37018868 - L1Md_T LINE L1 0 6585 1 7 1249 582 15 0 0 chr9 87058993 87059060 -37017112 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1249 677 263 76 15 chr9 87059065 87059262 -37016910 - MTE-int LTR MaLR -592 988 780 7 1249 228 318 83 18 chr9 87059237 87059346 -37016826 - MTE-int LTR MaLR -991 589 474 7 1249 866 52 0 0 chr9 87060911 87061026 -37015146 + B1_Mm SINE Alu 25 139 -8 7 1249 198 0 0 0 chr9 87061026 87061048 -37015124 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 7 1249 324 0 0 0 chr9 87061048 87061084 -37015088 + (CAA)n Simple_repeat Simple_repeat 2 37 0 7 1249 234 0 0 0 chr9 87062222 87062248 -37013924 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1249 1322 244 63 17 chr9 87062360 87062722 -37013450 - MTEb LTR MaLR 0 379 1 7 1249 908 227 165 22 chr9 87062952 87063321 -37012851 + RLTR28B LTR ERVL 1 422 -59 7 1249 257 81 31 31 chr9 87064754 87064818 -37011354 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 8 1249 898 93 42 28 chr9 87064839 87064983 -37011189 + B1_Mus1 SINE Alu 2 147 -1 8 1249 252 240 0 0 chr9 87064984 87065059 -37011113 + A-rich Low_complexity Low_complexity 1 75 0 8 1249 769 234 12 0 chr9 87065171 87065338 -37010834 + B3 SINE B2 48 216 0 8 1249 622 35 0 12 chr9 87065739 87065825 -37010347 - L1Md_T LINE L1 0 6582 6498 8 1249 946 245 9 19 chr9 87066400 87066616 -37009556 - B3 SINE B2 -1 215 2 8 1249 235 290 48 48 chr9 87066861 87066966 -37009206 - L2a LINE L2 0 3426 3322 8 1249 255 255 53 11 chr9 87066989 87067084 -37009088 - L2a LINE L2 -267 3159 3061 8 1249 1199 68 0 0 chr9 87067482 87067628 -37008544 + B1_Mus1 SINE Alu 1 146 -2 8 1249 405 0 0 0 chr9 87067628 87067673 -37008499 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 8 1249 1303 76 0 66 chr9 87067675 87067873 -37008299 + B2_Mm1a SINE B2 1 185 -8 8 1249 1303 178 54 161 chr9 87068662 87068904 -37007268 - RMER10B LTR ERVL 0 398 193 9 1249 1181 73 0 6 chr9 87068904 87069070 -37007102 + (GGAGA)n Simple_repeat Simple_repeat 4 168 0 9 1249 1303 178 54 161 chr9 87069070 87069256 -37006916 - RMER10B LTR ERVL -206 192 16 9 1249 436 284 34 44 chr9 87069586 87069914 -37006258 - MER47B DNA MER2_type -8 410 20 9 1249 234 0 0 0 chr9 87069968 87069994 -37006178 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1249 348 88 0 0 chr9 87071340 87071397 -37004775 + (A)n Simple_repeat Simple_repeat 1 57 0 9 1249 802 230 47 5 chr9 87071413 87071605 -37004567 + B3 SINE B2 4 203 -13 9 1249 329 291 19 10 chr9 87071605 87071669 -37004503 + MLT2D LTR ERVL 26 89 -325 9 1249 229 0 54 27 chr9 87071669 87071706 -37004466 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 9 1249 329 290 122 14 chr9 87071706 87071788 -37004384 + MLT2D LTR ERVL 90 187 -210 9 1249 1254 118 113 0 chr9 87072325 87072528 -37003644 + URR1A DNA MER1_type 1 226 0 9 1249 246 32 0 0 chr9 87072854 87072885 -37003287 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1249 234 0 0 0 chr9 87073924 87073950 -37002222 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1249 1220 54 0 13 chr9 87074898 87075048 -37001124 - B1_Mus1 SINE Alu 0 148 1 1 1249 298 190 114 0 chr9 87075399 87075478 -37000694 - RMER30 DNA MER1_type -19 183 96 1 1249 316 232 204 57 chr9 87075499 87075652 -37000520 - B3A SINE B2 -30 186 3 1 1249 183 396 0 0 chr9 87076199 87076295 -36999877 - L2b LINE L2 -1 3374 3279 1 1249 225 263 18 0 chr9 87076532 87076589 -36999583 - MER5B DNA MER1_type -31 147 90 1 1249 908 253 23 63 chr9 87076642 87076942 -36999230 + B4A SINE B4 3 290 -2 1 1249 342 0 0 0 chr9 87077736 87077774 -36998398 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1249 399 113 0 0 chr9 87077774 87077836 -36998336 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1249 379 300 32 26 chr9 87079406 87079560 -36996612 - LTR40a LTR ERVL 0 519 365 1 1249 238 338 80 20 chr9 87079579 87079730 -36996442 - MLT1D LTR MaLR -4 501 342 1 1249 603 260 226 4 chr9 87080147 87080421 -36995751 - MLT1D LTR MaLR -153 352 18 1 1249 298 289 208 37 chr9 87080499 87080740 -36995432 - MLT1D-int LTR MaLR -85 1286 1005 1 1249 319 274 105 0 chr9 87080753 87080848 -36995324 - 5S rRNA rRNA -16 105 1 1 1249 2220 126 14 6 chr9 87081001 87081353 -36994819 + RLTR15 LTR ERVK 1 355 -4 1 1249 433 235 0 36 chr9 87082120 87082243 -36993929 + PB1D10 SINE Alu 17 131 -17 1 1249 338 146 253 12 chr9 87082895 87082978 -36993194 - ERVL-int LTR ERVL -4514 1243 1141 1 1249 349 257 0 39 chr9 87083008 87083085 -36993087 - ID SINE ID -148 76 3 1 1249 410 331 120 64 chr9 87083086 87083444 -36992728 - ERVL-int LTR ERVL -4638 1119 742 1 1249 365 214 14 0 chr9 87083453 87083523 -36992649 + ID4_ SINE ID 4 74 -9 1 1249 319 265 112 0 chr9 87083590 87083688 -36992484 + PB1D10 SINE Alu 11 119 -1 1 1249 22 0 0 0 chr9 87084407 87084429 -36991743 + AT_rich Low_complexity Low_complexity 1 22 0 1 1249 2035 152 81 26 chr9 87085217 87085601 -36990571 + RLTR44A LTR ERVK 1 405 0 1 1249 418 107 0 0 chr9 87085641 87085697 -36990475 + RLTR44-int LTR ERVK 1 56 -2756 1 1249 1001 102 0 98 chr9 87085707 87085891 -36990281 + RLTR44-int LTR ERVK 816 981 -1831 1 1249 5024 34 24 2 chr9 87086197 87086782 -36989390 + RLTR44-int LTR ERVK 2214 2811 -1 1 1249 2229 119 93 21 chr9 87086783 87087161 -36989011 + RLTR44A LTR ERVK 1 405 0 1 1249 576 193 249 18 chr9 87088086 87088255 -36987917 + B3 SINE B2 1 208 -8 1 1249 198 0 0 0 chr9 87090525 87090547 -36985625 + (ATATG)n Simple_repeat Simple_repeat 1 22 0 1 1249 557 196 28 0 chr9 87090646 87090753 -36985419 - B3 SINE B2 -102 114 5 1 1249 189 0 0 0 chr9 87090814 87090835 -36985337 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1249 300 283 156 28 chr9 87090925 87091143 -36985029 - L1M2 LINE L1 -4510 2339 2094 1 1249 623 291 157 23 chr9 87091171 87091611 -36984561 - L1M2 LINE L1 -4952 1897 1399 1 1249 250 299 114 12 chr9 87091982 87092148 -36984024 + L1MEc LINE L1 38 220 -6180 1 1249 378 0 0 0 chr9 87092901 87092943 -36983229 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1249 487 102 0 22 chr9 87093639 87093729 -36982443 + (TCCA)n Simple_repeat Simple_repeat 2 89 0 1 1249 217 195 0 0 chr9 87093783 87093824 -36982348 - B1F SINE Alu -97 52 12 1 1249 29 0 0 0 chr9 87093992 87094021 -36982151 + AT_rich Low_complexity Low_complexity 1 29 0 1 1249 295 221 167 9 chr9 87094120 87094234 -36981938 + MER34-int LTR ERV1 502 633 -7574 1 1249 378 167 0 0 chr9 87094948 87095008 -36981164 + 5S rRNA rRNA 6 65 -56 1 1249 25 31 0 0 chr9 87097751 87097783 -36978389 + AT_rich Low_complexity Low_complexity 1 32 0 1 1249 508 304 42 47 chr9 87098147 87098337 -36977835 - ID_B1 SINE B4 -13 211 23 1 1249 211 316 35 0 chr9 87099858 87099915 -36976257 + ID4_ SINE ID 12 70 -13 1 1249 406 349 0 22 chr9 87099985 87100164 -36976008 + (TATG)n Simple_repeat Simple_repeat 3 177 0 1 1249 375 371 0 11 chr9 87100254 87100431 -36975741 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 1249 303 369 0 22 chr9 87100506 87100689 -36975483 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1249 360 324 23 11 chr9 87100720 87100895 -36975277 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 1 1249 303 156 16 0 chr9 87102035 87102099 -36974073 - L1Md_F2 LINE L1 -5 6577 6513 1 1249 745 253 82 6 chr9 87102548 87102731 -36973441 - B3 SINE B2 -13 203 7 1 1249 33 73 0 0 chr9 87103484 87103552 -36972620 + AT_rich Low_complexity Low_complexity 1 68 0 1 1249 624 50 0 0 chr9 87104064 87104144 -36972028 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1249 650 302 55 35 chr9 87104187 87104444 -36971728 - B4 SINE B4 -29 263 2 1 1249 353 322 0 0 chr9 87105294 87105384 -36970788 - PB1 SINE Alu -12 115 26 1 1249 756 213 0 0 chr9 87108590 87108731 -36967441 - B1_Mur1 SINE Alu -8 141 1 1 1249 1117 149 80 0 chr9 87108792 87108980 -36967192 + B3 SINE B2 1 203 -13 1 1249 226 219 0 0 chr9 87109194 87109235 -36966937 + PB1D9 SINE Alu 1 41 -79 1 1249 2469 189 65 19 chr9 87109375 87109914 -36966258 + RLTR12A LTR ERVK 1 564 -4 1 1249 270 0 0 0 chr9 87109938 87109968 -36966204 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1249 2321 239 44 29 chr9 87110463 87111121 -36965051 + L1_Rod LINE L1 4411 5078 -769 1 1249 968 74 96 0 chr9 87111312 87111447 -36964725 + B1_Mus1 SINE Alu 1 148 0 1 1249 411 73 0 0 chr9 87111488 87111543 -36964629 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1249 217 200 0 82 chr9 87111559 87111608 -36964564 - B3A SINE B2 -152 46 2 1 1249 21 36 0 0 chr9 87111782 87111810 -36964362 + AT_rich Low_complexity Low_complexity 1 28 0 1 1249 24 32 0 0 chr9 87112011 87112042 -36964130 + AT_rich Low_complexity Low_complexity 1 31 0 1 1249 255 318 26 53 chr9 87112815 87112928 -36963244 + LTR16A1 LTR ERVL 247 356 -100 1 1249 24 0 0 0 chr9 87113546 87113570 -36962602 + AT_rich Low_complexity Low_complexity 1 24 0 1 1249 4435 48 19 5 chr9 87113662 87114225 -36961947 + L1Md_F2 LINE L1 6012 6582 0 1 1249 3174 61 0 0 chr9 87116265 87116661 -36959511 + L1_Mus1 LINE L1 6167 6562 -5 1 1249 26 30 0 0 chr9 87116822 87116855 -36959317 + AT_rich Low_complexity Low_complexity 1 33 0 1 1249 324 182 299 7 chr9 87118345 87118471 -36957701 + B3A SINE B2 1 169 -26 1 1249 483 18 0 0 chr9 87118471 87118527 -36957645 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1249 292 182 299 7 chr9 87118527 87118544 -36957628 + B2_Mm2 SINE B2 170 186 -9 1 1249 432 0 0 0 chr9 87118835 87118883 -36957289 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1249 345 356 87 18 chr9 87119234 87119566 -36956606 + L2 LINE L2 1459 1813 -1606 1 1249 663 196 74 89 chr9 87119574 87119764 -36956408 - B2_Mm2 SINE B2 -4 191 5 1 1249 243 0 0 0 chr9 87119770 87119797 -36956375 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1249 215 308 0 93 chr9 87120292 87120378 -36955794 + L2 LINE L2 2616 2693 -726 1 1249 703 217 158 75 chr9 87121142 87121396 -36954776 + MTE2b LTR MaLR 101 375 -4 1 1249 981 52 44 15 chr9 87121703 87121839 -36954333 + B1_Mus1 SINE Alu 9 148 0 1 1249 536 215 66 8 chr9 87122460 87122582 -36953590 - ID_B1 SINE B4 0 224 96 1 1249 811 249 12 0 chr9 87122894 87123059 -36953113 + B3 SINE B2 37 203 -13 1 1249 371 312 63 78 chr9 87123425 87123696 -36952476 + MLT1J-int LTR MaLR 75 341 -1046 1 1249 261 333 28 9 chr9 87123857 87123966 -36952206 + MLT1J-int LTR MaLR 593 703 -684 1 1249 395 279 86 38 chr9 87124125 87124416 -36951756 - L1MB3 LINE L1 -9 6174 5870 1 1249 1979 179 95 3 chr9 87124439 87124809 -36951363 + MTC LTR MaLR 18 421 0 1 1249 334 274 146 6 chr9 87124817 87124975 -36951197 + L1M3 LINE L1 5494 5673 -510 1 1249 214 312 105 18 chr9 87125403 87125517 -36950655 + MIR SINE MIR 84 207 -55 1 1249 1844 102 40 25 chr9 87127610 87127932 -36948240 - ORR1A4 LTR MaLR 0 329 3 1 1249 189 74 0 0 chr9 87128031 87128058 -36948114 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1249 1226 14 7 0 chr9 87128058 87128200 -36947972 - B1_Mus2 SINE Alu -2 145 3 1 1249 23 0 0 0 chr9 87128210 87128233 -36947939 + AT_rich Low_complexity Low_complexity 1 23 0 1 1249 363 308 110 8 chr9 87128258 87128376 -36947796 - RSINE1 SINE B4 -34 131 2 1 1249 641 337 98 5 chr9 87128381 87128584 -36947588 - ID_B1 SINE B4 -2 222 1 1 1249 298 305 139 50 chr9 87128621 87128859 -36947313 + L2 LINE L2 2320 2578 -841 1 1249 1123 144 77 0 chr9 87129290 87129485 -36946687 + URR1A DNA MER1_type 17 226 0 1 1249 436 265 89 26 chr9 87129485 87129513 -36946659 - CYRA11_Mm Unknown Y-chromosome -434 183 144 1 1249 207 0 0 0 chr9 87130235 87130258 -36945914 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1249 541 271 13 40 chr9 87130259 87130409 -36945763 - RSINE1 SINE B4 -16 149 4 1 1249 214 320 94 0 chr9 87130434 87130539 -36945633 - MIRc SINE MIR -97 179 66 1 1249 628 185 57 19 chr9 87131162 87131314 -36944858 - B1_Mur2 SINE Alu -1 147 2 1 1249 363 44 0 0 chr9 87131399 87131444 -36944728 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1249 688 241 51 0 chr9 87131447 87131584 -36944588 - RSINE1 SINE B4 -20 145 2 1 1249 504 279 19 5 chr9 87131584 87131694 -36944478 - PB1D10 SINE Alu -31 118 3 1 1249 264 331 60 90 chr9 87131613 87131636 -36944536 - MT2B2 LTR ERVL -343 241 175 1 1249 309 318 0 33 chr9 87131636 87131727 -36944445 - B4 SINE B4 -147 145 58 1 1249 264 331 60 90 chr9 87131727 87131746 -36944426 - MT2B2 LTR ERVL -343 174 113 1 1249 369 340 84 7 chr9 87131844 87131986 -36944186 + RSINE1 SINE B4 11 163 -2 1 1249 333 0 0 0 chr9 87134890 87134927 -36941245 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1249 397 329 145 25 chr9 87136067 87136391 -36939781 + L1MEc LINE L1 21 383 -6017 1 1249 229 258 81 0 chr9 87137266 87137328 -36938844 + MER2B DNA MER2_type 9 75 -261 1 1249 320 289 144 0 chr9 87137689 87137786 -36938386 - PB1D10 SINE Alu -1 116 6 1 1249 379 267 112 34 chr9 87138118 87138296 -36937876 + L1MEc LINE L1 2060 2251 -4149 1 1249 287 306 0 45 chr9 87138314 87138403 -36937769 + PB1D10 SINE Alu 31 115 -2 1 1249 1214 55 0 0 chr9 87138529 87138675 -36937497 - B1_Mm SINE Alu 0 147 2 2 1249 401 252 87 0 chr9 87138708 87138811 -36937361 + B1F2 SINE Alu 16 127 -22 2 1249 249 306 18 53 chr9 87138732 87138846 -36937326 + RLTR25A LTR ERVK 522 631 -472 2 1249 24 53 0 0 chr9 87139249 87139287 -36936885 + AT_rich Low_complexity Low_complexity 1 38 0 2 1249 911 211 158 21 chr9 87139639 87139968 -36936204 + ORR1D1 LTR MaLR 1 374 0 2 1249 207 284 57 104 chr9 87140525 87140631 -36935541 - L4 LINE RTE -540 1489 1389 2 1249 751 279 99 36 chr9 87140681 87140904 -36935268 + B4A SINE B4 2 238 -54 2 1249 1920 121 84 26 chr9 87143554 87143901 -36932271 + ORR1B2 LTR MaLR 1 367 0 2 1249 3216 131 67 121 chr9 87144699 87145435 -36930737 + RMER6A LTR ERVK 59 754 -2 2 1249 6472 60 0 0 chr9 87145541 87146391 -36929781 + L1Md_F2 LINE L1 4737 5586 -297 2 1249 8324 29 8 0 chr9 87146391 87147379 -36928793 + L1Md_F2 LINE L1 5587 6582 0 2 1249 532 297 162 18 chr9 87147864 87148352 -36927820 + L1MB8 LINE L1 5615 6179 0 2 1249 387 130 72 0 chr9 87148429 87148498 -36927674 - HAL1-3A_ME LINE L1 -809 2049 1976 2 1249 25 0 0 0 chr9 87149225 87149250 -36926922 + AT_rich Low_complexity Low_complexity 1 25 0 2 1249 417 287 80 24 chr9 87149424 87149549 -36926623 + B1F SINE Alu 10 141 -8 2 1249 850 238 40 158 chr9 87151343 87151793 -36924379 - RLTR23 LTR ERV1 0 430 34 2 1249 1944 128 100 63 chr9 87151996 87152454 -36923718 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1249 351 189 76 22 chr9 87152499 87152591 -36923581 - B1_Mus2 SINE Alu -44 103 7 2 1249 970 248 28 21 chr9 87152662 87152946 -36923226 - B4A SINE B4 -4 288 3 2 1249 2018 184 17 154 chr9 87153286 87153439 -36922733 + RLTR25A LTR ERVK 1 143 -960 2 1249 207 0 0 0 chr9 87153439 87153462 -36922710 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1249 198 0 0 0 chr9 87153462 87153483 -36922689 + (TATATG)n Simple_repeat Simple_repeat 2 23 0 2 1249 2018 184 17 154 chr9 87153483 87153854 -36922318 + RLTR25A LTR ERVK 144 453 -650 2 1249 1628 174 123 113 chr9 87153896 87154501 -36921671 + ORR1A3-int LTR MaLR 397 1000 -963 2 1249 754 210 38 130 chr9 87154241 87154744 -36921428 + RLTR25A LTR ERVK 521 1028 0 2 1249 22 70 0 0 chr9 87155942 87155985 -36920187 + AT_rich Low_complexity Low_complexity 1 43 0 2 1249 21 0 0 0 chr9 87156293 87156314 -36919858 + AT_rich Low_complexity Low_complexity 1 21 0 2 1249 330 247 59 49 chr9 87156324 87156390 -36919782 + L1MD LINE L1 5128 5189 -957 2 1249 2856 49 40 3 chr9 87156390 87156760 -36919412 + L1_Mus2 LINE L1 6183 6566 0 2 1249 330 249 273 19 chr9 87156760 87156905 -36919267 + L1MD LINE L1 5190 5376 -983 2 1249 1221 240 88 16 chr9 87156915 87157220 -36918952 - MTD LTR MaLR -2 417 91 2 1249 330 26 0 0 chr9 87158320 87158359 -36917813 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1249 519 85 0 0 chr9 87158373 87158455 -36917717 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1249 531 0 0 0 chr9 87158455 87158513 -36917659 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1249 3056 47 16 0 chr9 87159133 87159515 -36916657 + L1Md_F2 LINE L1 6194 6581 -1 2 1249 301 336 110 21 chr9 87159970 87160211 -36915961 + LTR16E2 LTR ERVL 237 529 -39 2 1249 26 30 0 0 chr9 87160871 87160904 -36915268 + AT_rich Low_complexity Low_complexity 1 33 0 2 1249 1384 79 26 0 chr9 87161007 87161196 -36914976 + B2_Mm2 SINE B2 2 195 0 2 1249 240 203 51 0 chr9 87161610 87161669 -36914503 + L1MB2 LINE L1 5884 5945 -226 2 1249 336 244 83 8 chr9 87161700 87161820 -36914352 + L1MB2 LINE L1 6007 6135 -36 2 1249 801 284 16 0 chr9 87161864 87162047 -36914125 + B3 SINE B2 1 186 -30 2 1249 459 0 0 0 chr9 87162047 87162098 -36914074 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1249 210 71 0 0 chr9 87162104 87162132 -36914040 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2 156 2326 193 15 15 chr9 87162682 87163151 -36913021 + RMER1C Other Other 751 1219 -123 2 1250 446 120 13 0 chr9 87163151 87163226 -36912946 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 2 1250 333 173 13 26 chr9 87163231 87163308 -36912864 + RMER1C Other Other 1259 1334 -8 2 1250 1019 285 15 25 chr9 87164353 87164623 -36911549 + B4A SINE B4 9 287 -5 2 1250 222 37 0 0 chr9 87165370 87165397 -36910775 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1250 23 54 0 0 chr9 87166855 87166892 -36909280 + AT_rich Low_complexity Low_complexity 1 37 0 2 1250 32 86 0 0 chr9 87167046 87167127 -36909045 + AT_rich Low_complexity Low_complexity 1 81 0 2 1250 340 305 156 0 chr9 87167144 87167298 -36908874 - B3A SINE B2 -18 180 3 2 1250 271 250 0 0 chr9 87168257 87168325 -36907847 + B1F SINE Alu 82 149 0 2 1250 749 199 155 17 chr9 87168458 87168632 -36907540 - Lx6 LINE L1 -1 7459 7262 2 1250 10807 204 59 21 chr9 87168631 87169775 -36906397 - Lx6 LINE L1 -473 6987 5786 2 1250 1222 41 0 0 chr9 87169775 87169921 -36906251 - B1_Mus1 SINE Alu -2 146 1 2 1250 10807 161 60 11 chr9 87169921 87171906 -36904266 - Lx6 LINE L1 -95 5785 3695 2 1250 39296 6 0 0 chr9 87171944 87177323 -36898849 + L1Md_A LINE L1 207 5586 -297 2 1250 9239 1 0 0 chr9 87177323 87178319 -36897853 + L1Md_A LINE L1 5587 6582 0 2 1250 3117 148 42 15 chr9 87178348 87178965 -36897207 - Lx6 LINE L1 -2239 3641 3008 2 1250 2925 27 117 0 chr9 87179172 87179540 -36896632 - IAPLTR2a LTR ERVK 0 411 1 2 1250 2315 98 120 0 chr9 87179674 87180074 -36896098 - RLTR47_MM LTR ERV1 -84 448 1 2 1250 367 406 0 8 chr9 87180161 87180429 -36895743 - MuRRS4-int LTR ERV1 -131 4932 4667 2 1250 300 309 23 23 chr9 87180719 87180848 -36895324 - MuRRS4-int LTR ERV1 -1789 5767 5639 2 1250 1943 300 44 42 chr9 87180966 87182445 -36893727 - MuRRS4-int LTR ERV1 -2079 5699 2860 2 1250 189 0 0 0 chr9 87182445 87182466 -36893706 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 2 1250 461 305 106 29 chr9 87182466 87182609 -36893563 - MuRRS4-int LTR ERV1 -2204 2859 2744 2 1250 1040 326 84 67 chr9 87182603 87183893 -36892279 - MuRRS4-int LTR ERV1 -5140 2466 1287 2 1250 395 274 67 55 chr9 87184267 87184670 -36891502 - MuRRS4-int LTR ERV1 -3785 905 475 2 1250 811 96 141 0 chr9 87185057 87185213 -36890959 - RLTR47_MM LTR ERV1 0 532 355 2 1250 522 152 0 0 chr9 87185244 87185336 -36890836 + CT-rich Low_complexity Low_complexity 4 95 0 2 1250 206 187 0 42 chr9 87185863 87185958 -36890214 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 2 1250 212 209 37 19 chr9 87186855 87186926 -36889246 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 1250 1851 164 13 3 chr9 87186926 87187232 -36888940 - RLTR27 LTR ERVK 0 309 1 2 1250 212 209 37 19 chr9 87187232 87187267 -36888905 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1250 195 162 0 0 chr9 87187296 87187333 -36888839 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1250 461 17 17 0 chr9 87188107 87188165 -36888007 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1250 7094 76 7 25 chr9 87188870 87189834 -36886338 - L1_Mus4 LINE L1 -2 6634 5688 2 1250 437 101 0 0 chr9 87189825 87189894 -36886278 - MusHAL1 LINE L1 -1000 1712 1644 2 1250 2155 180 48 2 chr9 87189890 87190285 -36885887 - L1VL4 LINE L1 -5840 462 50 2 1250 694 277 63 15 chr9 87190970 87191175 -36884997 - B3 SINE B2 0 216 2 2 1250 374 39 19 0 chr9 87192989 87193041 -36883131 + (TCTG)n Simple_repeat Simple_repeat 3 55 0 2 1250 1171 229 78 93 chr9 87194294 87194680 -36881492 - Lx2B LINE L1 -4 6996 6617 2 1250 25 0 0 0 chr9 87195770 87195795 -36880377 + AT_rich Low_complexity Low_complexity 1 25 0 2 1250 1053 191 4 73 chr9 87196358 87196590 -36879582 + B3 SINE B2 1 216 0 2 1250 468 123 0 0 chr9 87196965 87197038 -36879134 - B2_Mm2 SINE B2 -121 74 2 2 1250 466 285 0 16 chr9 87197370 87197495 -36878677 - RSINE1 SINE B4 -20 145 23 2 1250 1701 265 118 33 chr9 87199556 87200250 -36875922 + Lx8 LINE L1 6721 7473 0 2 1250 230 280 136 27 chr9 87200155 87200265 -36875907 + RMER1C Other Other 1221 1342 0 2 1250 269 284 0 13 chr9 87200452 87200527 -36875645 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 2 1250 185 290 211 14 chr9 87201372 87201519 -36874653 + L2a LINE L2 3224 3399 -27 2 1250 207 184 26 0 chr9 87201730 87201768 -36874404 + CT-rich Low_complexity Low_complexity 2 40 0 2 1250 461 234 9 0 chr9 87201772 87201879 -36874293 - ID_B1 SINE B4 -3 221 114 2 1250 180 152 0 0 chr9 87202563 87202596 -36873576 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1250 25 0 0 0 chr9 87203073 87203098 -36873074 + AT_rich Low_complexity Low_complexity 1 25 0 2 1250 2773 221 22 13 chr9 87203686 87204231 -36871941 + Lx6 LINE L1 6907 7456 -4 2 1250 396 0 0 0 chr9 87204688 87204732 -36871440 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1250 787 171 14 0 chr9 87206225 87206371 -36869801 - ORR1C2 LTR MaLR 0 384 237 2 1250 1611 176 122 25 chr9 87206361 87206729 -36869443 + RMER15 LTR ERVL 167 570 -5 2 1250 1122 196 44 28 chr9 87206727 87206979 -36869193 - ORR1C2 LTR MaLR -128 256 1 2 1250 319 365 23 29 chr9 87208322 87208494 -36867678 + MamRep1161 DNA TcMar 1 171 -786 2 1250 4352 138 4 4 chr9 87209413 87210095 -36866077 - L1_Mm LINE L1 -525 5358 4677 2 1250 2626 76 22 5 chr9 87210104 87210474 -36865698 + L1_Mus3 LINE L1 6263 6638 0 2 1250 416 280 141 16 chr9 87211029 87211221 -36864951 + RMER15 LTR ERVL 356 571 -4 2 1250 450 0 0 0 chr9 87212222 87212272 -36863900 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1250 648 213 8 8 chr9 87212290 87212418 -36863754 - B3 SINE B2 -88 128 1 2 1250 1632 147 70 117 chr9 87214411 87214849 -36861323 + Lx4B LINE L1 6654 7054 -4 2 1250 267 198 100 90 chr9 87216614 87216714 -36859458 - MLT1E2 LTR MaLR -526 101 1 2 1250 594 310 36 24 chr9 87216725 87216976 -36859196 + MLT2F LTR ERVL 369 622 -41 2 1250 387 0 0 0 chr9 87216976 87217019 -36859153 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 2 1250 591 130 8 16 chr9 87217019 87217144 -36859028 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 2 1250 213 39 0 0 chr9 87217146 87217172 -36859000 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 2 1250 247 233 0 32 chr9 87217172 87217234 -36858938 + MLT2F LTR ERVL 504 563 0 2 1250 323 264 30 26 chr9 87217357 87217487 -36858685 - MLT1I LTR MaLR -300 144 16 2 1250 408 89 6 0 chr9 87217672 87217741 -36858431 - B1_Mus2 SINE Alu 0 147 46 2 1250 1159 69 0 7 chr9 87217825 87217971 -36858201 - B1_Mus1 SINE Alu -2 146 2 2 1250 23 0 0 0 chr9 87217978 87218001 -36858171 + AT_rich Low_complexity Low_complexity 1 23 0 2 1250 504 0 0 0 chr9 87219045 87219101 -36857071 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1250 6221 58 1 18 chr9 87219169 87219998 -36856174 + L1_Mus1 LINE L1 5776 6567 0 3 1250 26 0 0 0 chr9 87220098 87220124 -36856048 + AT_rich Low_complexity Low_complexity 1 26 0 3 1250 1591 57 13 17 chr9 87220190 87220421 -36855751 - L1_Mus3 LINE L1 -2 6636 6407 3 1250 481 212 7 14 chr9 87222106 87222245 -36853927 + GA-rich Low_complexity Low_complexity 4 141 0 3 1250 1179 244 139 72 chr9 87222958 87223447 -36852725 - Lx9 LINE L1 -1 7643 7122 3 1250 384 274 43 99 chr9 87223533 87223740 -36852432 + B4A SINE B4 65 274 -18 3 1250 498 33 0 0 chr9 87223781 87223841 -36852331 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1250 1400 75 42 21 chr9 87224036 87224227 -36851945 - B2_Mm2 SINE B2 0 195 1 3 1250 23 0 0 0 chr9 87224430 87224453 -36851719 + AT_rich Low_complexity Low_complexity 1 23 0 3 1250 336 322 48 75 chr9 87225101 87225329 -36850843 - L1MC5 LINE L1 -1065 6896 6675 3 1250 387 0 0 0 chr9 87225579 87225622 -36850550 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1250 232 325 13 0 chr9 87225765 87225842 -36850330 - L1MC4 LINE L1 -4501 1714 1637 3 1250 409 164 12 62 chr9 87225916 87226014 -36850158 + L1MA7 LINE L1 5810 5903 -271 3 1250 340 258 25 8 chr9 87226206 87226327 -36849845 - L1M2 LINE L1 -922 5221 5099 3 1250 195 69 0 0 chr9 87226650 87226679 -36849493 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1250 4499 186 120 30 chr9 87226969 87227944 -36848228 - RMER1B Other Other -2 1064 2 3 1250 275 304 64 36 chr9 87227984 87228124 -36848048 - LTR16E2 LTR ERVL -35 533 390 3 1250 1473 123 1 16 chr9 87228634 87228876 -36847296 + L1_Mm LINE L1 5488 5725 -155 3 1250 363 23 0 0 chr9 87229313 87229357 -36846815 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1250 902 271 27 5 chr9 87229362 87229584 -36846588 - B4 SINE B4 -64 228 2 3 1250 22 35 0 0 chr9 87230229 87230258 -36845914 + AT_rich Low_complexity Low_complexity 1 29 0 3 1250 795 50 0 0 chr9 87230692 87230792 -36845380 + (TTTCC)n Simple_repeat Simple_repeat 1 100 0 3 1250 981 104 0 0 chr9 87230792 87230935 -36845237 + (TTC)n Simple_repeat Simple_repeat 2 145 0 3 1250 1468 219 26 14 chr9 87231818 87232165 -36844007 + MER121 Unknown Unknown 15 365 -47 3 1250 925 336 65 8 chr9 87233661 87234162 -36842010 + L1MA8 LINE L1 5409 5905 -1739 3 1250 297 284 19 19 chr9 87234783 87234888 -36841284 - ID4_ SINE ID -49 103 2 3 1250 267 114 0 0 chr9 87235318 87235362 -36840810 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1250 497 309 29 14 chr9 87235381 87235519 -36840653 - B3A SINE B2 -57 141 2 3 1250 44 56 0 0 chr9 87235541 87235613 -36840559 + AT_rich Low_complexity Low_complexity 1 72 0 3 1250 1228 231 10 66 chr9 87235673 87235975 -36840197 - MTD LTR MaLR -134 285 1 3 1250 369 102 0 0 chr9 87236884 87236943 -36839229 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1250 780 286 55 17 chr9 87236956 87237191 -36838981 - B4 SINE B4 -43 249 6 3 1250 446 290 43 13 chr9 87237197 87237431 -36838741 - L1MEc LINE L1 -5491 909 669 3 1250 1053 58 0 7 chr9 87237435 87237561 -36838611 + B1_Mus1 SINE Alu 12 137 -11 3 1250 374 54 36 0 chr9 87237561 87237617 -36838555 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 3 1250 1053 58 0 7 chr9 87237617 87237628 -36838544 + B1_Mus1 SINE Alu 138 148 0 3 1250 275 327 107 6 chr9 87237651 87237820 -36838352 - L1MEc LINE L1 -5784 616 431 3 1250 1383 214 35 11 chr9 87238440 87238723 -36837449 + B4 SINE B4 1 290 -2 3 1250 221 228 13 0 chr9 87238731 87238810 -36837362 + (CATA)n Simple_repeat Simple_repeat 2 81 0 3 1250 545 42 14 0 chr9 87240231 87240303 -36835869 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1250 414 318 15 8 chr9 87242551 87242684 -36833488 - ID_B1 SINE B4 -9 215 82 3 1250 1274 192 95 34 chr9 87242676 87242972 -36833200 - RLTR46 LTR ERVK -6 314 1 3 1250 734 108 36 0 chr9 87242972 87243083 -36833089 - IAPEY3-int LTR ERVK 0 7680 7566 3 1250 2676 50 0 0 chr9 87243103 87243420 -36832752 - RLTR10-int LTR ERVK -188 1799 1483 3 1250 2937 130 34 33 chr9 87243419 87243951 -36832221 - IAPEY3-int LTR ERVK -151 7529 6965 3 1250 1458 124 97 0 chr9 87243952 87244178 -36831994 - IAP-d-int LTR ERVK -1288 5254 5007 3 1250 811 192 6 6 chr9 87244178 87244335 -36831837 - IAP-d-int LTR ERVK -6039 503 347 3 1250 562 106 0 23 chr9 87244329 87244416 -36831756 - IAP-d-int LTR ERVK -6365 177 93 3 1250 535 49 86 53 chr9 87244420 87244572 -36831600 + CT-rich Low_complexity Low_complexity 3 159 0 3 1250 656 246 70 0 chr9 87244586 87244814 -36831358 - IAPEY3-int LTR ERVK -6902 778 535 3 1250 437 246 42 90 chr9 87244815 87245015 -36831157 - IAPEY3-int LTR ERVK -1272 198 3 3 1250 1265 177 105 44 chr9 87245020 87245316 -36830856 - RLTR46 LTR ERVK -6 314 1 3 1250 366 333 21 0 chr9 87245316 87245409 -36830763 - ID_B1 SINE B4 -120 104 10 3 1250 254 257 57 0 chr9 87245425 87245495 -36830677 - PB1 SINE Alu -22 105 32 3 1250 297 0 0 0 chr9 87245496 87245529 -36830643 + (ATG)n Simple_repeat Simple_repeat 2 34 0 3 1250 349 286 127 0 chr9 87246172 87246298 -36829874 - Lx8 LINE L1 -613 6860 6719 3 1250 859 286 64 122 chr9 87246307 87246767 -36829405 - L1_Mur3 LINE L1 -2716 3131 2727 3 1250 2073 144 12 22 chr9 87246767 87247087 -36829085 - Lx3B LINE L1 -3 6970 6654 3 1250 859 285 71 114 chr9 87247087 87247413 -36828759 - L1_Mur3 LINE L1 -3101 2746 2388 3 1250 1106 115 0 0 chr9 87247430 87247587 -36828585 - B2_Mm2 SINE B2 -37 158 2 3 1250 643 307 110 24 chr9 87247627 87248274 -36827898 - L1_Mur3 LINE L1 -3548 2332 1637 3 1250 315 0 0 0 chr9 87248400 87248435 -36827737 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1250 1541 88 9 5 chr9 87248450 87248668 -36827504 - L1_Mus3 LINE L1 -15 6623 6405 3 1250 809 11 0 0 chr9 87248671 87248763 -36827409 + L1_Mus3 LINE L1 5947 6038 -600 3 1250 429 20 0 0 chr9 87249163 87249213 -36826959 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1250 1629 147 15 156 chr9 87249757 87250167 -36826005 - ORR1B1 LTR MaLR -2 392 41 3 1250 3636 28 5 0 chr9 87250534 87250928 -36825244 + MTA_Mm LTR MaLR 1 396 0 3 1250 261 209 0 0 chr9 87250955 87251022 -36825150 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1250 757 246 39 16 chr9 87251274 87251456 -36824716 - B3A SINE B2 -11 187 2 3 1250 215 378 26 26 chr9 87252202 87252229 -36823943 + L2a LINE L2 3259 3282 -144 3 1250 282 29 0 0 chr9 87252229 87252264 -36823908 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1250 215 378 26 26 chr9 87252264 87252388 -36823784 + L2a LINE L2 3283 3409 -17 3 1250 314 317 46 38 chr9 87252709 87252840 -36823332 + Tigger5 DNA MER2_type 98 229 -2177 3 1250 725 247 61 61 chr9 87253182 87253380 -36822792 + B3A SINE B2 1 198 0 3 1250 4603 64 0 12 chr9 87253401 87253971 -36822201 - L1Md_F2 LINE L1 -3 6579 6017 3 1250 662 300 32 36 chr9 87254216 87254405 -36821767 + L1MA6 LINE L1 5758 5946 -354 3 1250 201 39 0 0 chr9 87254405 87254431 -36821741 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1250 662 300 32 36 chr9 87254431 87254518 -36821654 + L1MA6 LINE L1 5947 6032 -268 3 1250 1163 221 5 24 chr9 87254630 87254843 -36821329 + B3 SINE B2 2 210 -6 3 1250 235 363 0 42 chr9 87255564 87255575 -36820597 - ID_B1 SINE B4 -58 166 119 3 1250 259 282 2 45 chr9 87255575 87255652 -36820520 - B1F2 SINE Alu -42 75 1 3 1250 183 156 0 0 chr9 87255719 87255751 -36820421 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1250 219 140 0 0 chr9 87256869 87256919 -36819253 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1250 558 331 103 78 chr9 87257145 87257368 -36818804 + MLT1A0 LTR MaLR 6 228 -137 3 1250 2185 191 68 47 chr9 87257368 87257884 -36818288 - RLTR11A2 LTR ERVK 0 527 1 3 1250 558 331 103 78 chr9 87257884 87257991 -36818181 + MLT1A0 LTR MaLR 229 344 -21 3 1250 1254 63 0 0 chr9 87258360 87258503 -36817669 + B1_Mus2 SINE Alu 1 143 -4 3 1250 234 0 0 0 chr9 87258507 87258533 -36817639 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1250 1869 277 134 32 chr9 87258667 87259563 -36816609 - L1MC3 LINE L1 0 7785 6799 3 1250 186 43 0 0 chr9 87259913 87259936 -36816236 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1250 1321 243 55 16 chr9 87260147 87260457 -36815715 + MTD LTR MaLR 4 325 -94 3 1250 324 256 13 0 chr9 87260945 87261023 -36815149 + B3 SINE B2 134 212 -4 3 1250 261 290 46 18 chr9 87261060 87261169 -36815003 + PB1D10 SINE Alu 1 112 -5 3 1250 647 209 0 0 chr9 87261421 87261536 -36814636 + MTD LTR MaLR 296 410 -9 3 1250 853 303 33 26 chr9 87261658 87261963 -36814209 - MER89 LTR ERV1 -2 557 251 3 1250 397 307 66 109 chr9 87262631 87263001 -36813171 + ORR1E LTR MaLR 24 374 0 3 1250 578 276 57 71 chr9 87265674 87265885 -36810287 + MTEa LTR MaLR 164 371 -8 3 1250 255 294 295 17 chr9 87265958 87266371 -36809801 + L2a LINE L2 2856 3389 -37 3 1250 885 45 0 0 chr9 87266930 87267040 -36809132 + (TC)n Simple_repeat Simple_repeat 2 111 0 3 1250 279 311 158 17 chr9 87267505 87267728 -36808444 - MIRb SINE MIR -14 254 2 3 1250 539 308 73 36 chr9 87267842 87268034 -36808138 + B3 SINE B2 8 206 -10 3 1250 357 316 96 48 chr9 87268340 87268589 -36807583 + MIR SINE MIR 1 261 -1 3 1250 256 330 19 29 chr9 87268791 87268894 -36807278 + MARNA DNA Mariner 460 561 -25 3 1250 564 258 0 0 chr9 87269326 87269454 -36806718 - B1F1 SINE Alu 0 149 22 3 1250 864 202 24 12 chr9 87270433 87270603 -36805569 - Lx5 LINE L1 0 7050 6879 3 1250 348 292 11 0 chr9 87270637 87270726 -36805446 + B3A SINE B2 55 144 -54 3 1250 326 80 0 20 chr9 87273390 87273441 -36802731 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 3 1250 3074 113 3 30 chr9 87273441 87273949 -36802223 - Lx3B LINE L1 -680 6293 5801 3 1250 420 71 0 0 chr9 87274402 87274458 -36801714 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1250 500 309 0 14 chr9 87275347 87275485 -36800687 + B1_Mur1 SINE Alu 5 140 -9 3 1250 202 348 85 38 chr9 87276200 87276412 -36799760 - MIRb SINE MIR -44 224 3 3 1250 815 133 5 0 chr9 87276820 87277038 -36799134 + (TG)n Simple_repeat Simple_repeat 1 219 0 3 1250 458 245 39 96 chr9 87278765 87278866 -36797306 + RMER15 LTR ERVL 259 358 -217 3 1250 694 147 61 15 chr9 87278866 87278997 -36797175 - B1_Mur4 SINE Alu -13 137 1 3 1250 458 245 39 96 chr9 87278997 87279103 -36797069 + RMER15 LTR ERVL 359 454 -121 3 1250 225 0 0 0 chr9 87279156 87279181 -36796991 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1250 322 251 108 49 chr9 87279201 87279417 -36796755 - L1M2 LINE L1 -838 5305 5070 4 1250 2292 272 58 22 chr9 87279477 87280335 -36795837 - L1M2 LINE L1 -1190 4953 4065 4 1250 530 264 23 0 chr9 87280337 87280466 -36795706 - B3A SINE B2 -64 134 3 4 1250 186 133 0 0 chr9 87280838 87280868 -36795304 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1250 1003 58 80 7 chr9 87281652 87281790 -36794382 - B1_Mus1 SINE Alu 0 148 1 4 1250 207 88 0 0 chr9 87282239 87282273 -36793899 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1250 297 0 0 0 chr9 87282980 87283013 -36793159 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1250 288 326 178 44 chr9 87283279 87283600 -36792572 - LTR16A1 LTR ERVL -28 428 65 4 1250 461 293 8 16 chr9 87283753 87283878 -36792294 - B1F2 SINE Alu -4 145 22 4 1250 486 0 0 0 chr9 87284117 87284171 -36792001 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1250 903 100 13 7 chr9 87284779 87284930 -36791242 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 4 1250 273 330 0 42 chr9 87284932 87285027 -36791145 - PB1D7 SINE Alu -15 105 15 4 1250 2810 83 10 3 chr9 87286336 87286724 -36789448 + L1_Mus3 LINE L1 6245 6635 -3 4 1250 5112 57 5 14 chr9 87286729 87287385 -36788787 + L1Md_F2 LINE L1 5933 6582 0 4 1250 24 53 0 0 chr9 87287877 87287915 -36788257 + AT_rich Low_complexity Low_complexity 1 38 0 4 1250 249 57 0 0 chr9 87288103 87288138 -36788034 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1250 1849 75 4 4 chr9 87289551 87289805 -36786367 - Lx2 LINE L1 -21 6976 6723 4 1250 250 230 26 26 chr9 87289888 87289964 -36786208 + MTEa LTR MaLR 278 353 -26 4 1250 235 189 0 36 chr9 87290404 87290459 -36785713 + B4A SINE B4 1 53 -239 4 1250 2683 244 92 60 chr9 87290474 87291465 -36784707 - RMER1B Other Other 0 1066 45 4 1250 261 247 41 51 chr9 87291740 87291838 -36784334 + B4 SINE B4 45 141 -151 4 1250 285 254 15 0 chr9 87291859 87291926 -36784246 + B4A SINE B4 223 290 -2 4 1250 207 0 0 0 chr9 87292278 87292301 -36783871 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 4 1250 902 264 42 95 chr9 87292313 87292619 -36783553 - ORR1E LTR MaLR -69 290 1 4 1250 546 261 15 0 chr9 87292669 87292799 -36783373 - B1F SINE Alu -7 142 11 4 1250 210 37 0 0 chr9 87293781 87293808 -36782364 + (TTGG)n Simple_repeat Simple_repeat 4 30 0 4 1251 274 263 93 50 chr9 87294261 87294401 -36781771 - MIRc SINE MIR -116 152 7 4 1251 189 0 0 0 chr9 87295091 87295112 -36781060 + (CCA)n Simple_repeat Simple_repeat 1 21 0 4 1251 200 132 26 0 chr9 87295860 87295898 -36780274 + A-rich Low_complexity Low_complexity 4 42 0 4 1251 222 37 0 0 chr9 87296175 87296202 -36779970 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1251 1235 41 0 0 chr9 87296204 87296351 -36779821 - B1_Mus1 SINE Alu 0 148 2 4 1251 227 396 6 45 chr9 87297482 87297659 -36778513 + MIR SINE MIR 18 187 -75 4 1251 243 0 0 0 chr9 87297753 87297780 -36778392 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1251 740 90 171 0 chr9 87297796 87297907 -36778265 - B1_Mus1 SINE Alu -18 130 1 4 1251 3705 38 1 0 chr9 87298058 87298534 -36777638 - L1Md_F2 LINE L1 -650 5932 5453 4 1251 5772 35 1 3 chr9 87298534 87299215 -36776957 + L1Md_F2 LINE L1 5891 6570 -12 4 1251 364 33 67 0 chr9 87299457 87299517 -36776655 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 4 1251 246 95 0 0 chr9 87299917 87299959 -36776213 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 4 1251 468 0 0 0 chr9 87302651 87302703 -36773469 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1251 480 89 0 0 chr9 87304251 87304330 -36771842 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 1251 884 193 69 25 chr9 87304646 87304848 -36771324 + B3 SINE B2 1 211 -5 4 1251 1494 42 2 4 chr9 87307116 87307571 -36768601 + (GGAGA)n Simple_repeat Simple_repeat 1 453 0 4 1251 180 0 0 0 chr9 87309692 87309712 -36766460 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1251 931 270 14 37 chr9 87310806 87311102 -36765070 + B4 SINE B4 2 290 -2 4 1251 387 0 0 0 chr9 87311138 87311181 -36764991 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1251 246 207 35 0 chr9 87311263 87311321 -36764851 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 4 1251 309 279 108 22 chr9 87311321 87311386 -36764786 - B4A SINE B4 0 292 225 4 1251 198 0 0 0 chr9 87311386 87311408 -36764764 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 4 1251 309 279 108 22 chr9 87311408 87311481 -36764691 - B4A SINE B4 -68 224 144 4 1251 617 232 22 49 chr9 87311493 87311658 -36764514 - ORR1E LTR MaLR -222 162 3 4 1251 441 0 0 0 chr9 87312341 87312390 -36763782 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1251 239 236 0 0 chr9 87312975 87313030 -36763142 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1251 198 0 0 0 chr9 87313410 87313432 -36762740 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1251 25 0 0 0 chr9 87316883 87316908 -36759264 + AT_rich Low_complexity Low_complexity 1 25 0 4 1251 342 0 0 0 chr9 87319023 87319061 -36757111 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 4 1251 744 95 0 0 chr9 87319071 87319176 -36756996 - B1_Mus1 SINE Alu -43 105 1 4 1251 306 182 45 0 chr9 87319317 87319383 -36756789 + Lx2B LINE L1 6930 6998 -2 4 1251 342 91 0 0 chr9 87319393 87319448 -36756724 + (A)n Simple_repeat Simple_repeat 1 55 0 4 1251 2125 91 9 51 chr9 87319486 87319822 -36756350 + RLTRETN_Mm LTR ERVK 1 322 0 4 1251 297 258 0 0 chr9 87320022 87320152 -36756020 + (CA)n Simple_repeat Simple_repeat 1 130 0 4 1251 3315 226 115 47 chr9 87320496 87322188 -36753984 - RMER1A Other Other -2 1064 1 4 1251 3154 131 10 4 chr9 87322699 87323181 -36752991 - L1_Mur2 LINE L1 -236 5641 5157 4 1251 777 219 106 6 chr9 87323181 87323351 -36752821 - B3 SINE B2 -19 197 11 4 1251 207 220 0 0 chr9 87323387 87323437 -36752735 + CT-rich Low_complexity Low_complexity 1 50 0 4 1251 410 0 0 20 chr9 87323551 87323602 -36752570 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1251 405 0 0 0 chr9 87323602 87323646 -36752526 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1251 273 332 69 38 chr9 87323696 87323945 -36752227 - B4 SINE B4 0 292 36 4 1251 291 277 24 12 chr9 87324259 87324343 -36751829 - B1F2 SINE Alu -64 85 1 4 1251 180 306 16 0 chr9 87325198 87325260 -36750912 + MIR SINE MIR 4 66 -196 4 1251 874 278 14 66 chr9 87325857 87326146 -36750026 - B4 SINE B4 -18 274 1 4 1251 219 385 73 18 chr9 87327763 87327927 -36748245 + MIR SINE MIR 3 175 -87 4 1251 194 329 43 0 chr9 87328122 87328192 -36747980 - L2b LINE L2 -8 3367 3295 4 1251 400 361 12 6 chr9 87328289 87328459 -36747713 + GA-rich Low_complexity Low_complexity 2 172 0 4 1251 204 345 0 11 chr9 87328574 87328665 -36747507 + GA-rich Low_complexity Low_complexity 4 93 0 4 1251 240 274 23 23 chr9 87329351 87329437 -36746735 - MER110A LTR ERV1 -107 361 276 4 1251 10594 64 0 1 chr9 87330610 87331960 -36744212 - L1_Mm LINE L1 -2031 3852 2504 4 1251 505 226 274 43 chr9 87332944 87333152 -36743020 + B4A SINE B4 3 258 -34 4 1251 225 0 0 0 chr9 87334705 87334730 -36741442 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 4 1251 201 331 116 34 chr9 87334892 87335039 -36741133 - MIRb SINE MIR -87 181 23 4 1251 198 0 0 0 chr9 87335068 87335090 -36741082 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 4 1251 532 261 135 56 chr9 87335507 87335759 -36740413 + B4 SINE B4 3 274 -18 4 1251 366 231 22 0 chr9 87336123 87336214 -36739958 + L1M1 LINE L1 5396 5488 -815 4 1251 532 177 88 9 chr9 87336220 87336334 -36739838 + B3 SINE B2 7 129 -87 4 1251 22 0 0 0 chr9 87336380 87336402 -36739770 + AT_rich Low_complexity Low_complexity 1 22 0 4 1251 569 268 49 22 chr9 87336402 87336627 -36739545 + L1M1 LINE L1 5461 5691 -609 4 1251 495 0 0 0 chr9 87336930 87336985 -36739187 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1251 1068 79 0 0 chr9 87337037 87337202 -36738970 + (TG)n Simple_repeat Simple_repeat 1 165 0 4 1251 273 29 0 0 chr9 87337244 87337278 -36738894 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1251 189 0 0 0 chr9 87337322 87337343 -36738829 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1251 221 43 85 0 chr9 87337753 87337800 -36738372 + (CAA)n Simple_repeat Simple_repeat 2 52 0 4 1251 257 119 34 0 chr9 87338093 87338152 -36738020 + (TCTG)n Simple_repeat Simple_repeat 4 64 0 4 1251 201 39 0 0 chr9 87339119 87339145 -36737027 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 4 1251 329 302 83 0 chr9 87339469 87339565 -36736607 + RSINE1 SINE B4 33 136 -29 4 1251 203 220 100 0 chr9 87339725 87339775 -36736397 + MIRm SINE MIR 30 84 -192 4 1251 1164 232 214 96 chr9 87340233 87340710 -36735462 + MT2A LTR ERVL 1 533 0 4 1251 354 312 71 99 chr9 87340753 87341105 -36735067 + L2a LINE L2 3012 3353 -73 4 1251 447 19 0 0 chr9 87341219 87341271 -36734901 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1251 6405 40 0 0 chr9 87341566 87342287 -36733885 - L1Md_T LINE L1 0 6582 5862 4 1251 719 96 37 0 chr9 87344390 87344525 -36731647 + (TAGA)n Simple_repeat Simple_repeat 2 141 0 4 1251 1809 239 123 20 chr9 87345063 87345665 -36730507 - Lx9 LINE L1 -158 7486 6823 4 1251 219 191 0 0 chr9 87345850 87345913 -36730259 + CT-rich Low_complexity Low_complexity 2 64 0 4 1251 1464 213 166 11 chr9 87345918 87346485 -36729687 - L1_Rod LINE L1 -93 5754 5081 4 1251 5425 62 0 0 chr9 87349018 87349651 -36726521 - L1_Mus1 LINE L1 -2 6565 5933 4 1251 6394 51 0 0 chr9 87349815 87350545 -36725627 - L1Md_F2 LINE L1 -6 6576 5847 4 1251 411 21 0 0 chr9 87350808 87350856 -36725316 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1251 441 0 0 0 chr9 87350858 87350907 -36725265 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1251 2132 271 15 15 chr9 87351902 87352437 -36723735 - Lx7 LINE L1 -587 7109 6575 4 1251 623 261 105 21 chr9 87352466 87352705 -36723467 + Lx7 LINE L1 7138 7396 -300 4 1251 315 0 0 0 chr9 87352706 87352741 -36723431 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1251 230 295 25 37 chr9 87353622 87353703 -36722469 + MER65D LTR ERV1 262 341 -132 5 1251 668 0 21 21 chr9 87355540 87355634 -36720538 + (CACAT)n Simple_repeat Simple_repeat 1 94 0 5 1251 541 265 133 17 chr9 87355825 87355998 -36720174 - B3A SINE B2 -5 193 1 5 1251 752 242 30 75 chr9 87356025 87356226 -36719946 - B3A SINE B2 -1 197 6 5 1251 239 181 14 0 chr9 87356407 87356479 -36719693 + Lx6 LINE L1 7383 7455 -5 5 1251 607 344 55 60 chr9 87356631 87356996 -36719176 + MLT1A LTR MaLR 1 363 -11 5 1251 2179 102 9 6 chr9 87357346 87357661 -36718511 - Lx3_Mus LINE L1 -435 6574 6259 5 1251 189 48 45 45 chr9 87358159 87358203 -36717969 + (TTTTTG)n Simple_repeat Simple_repeat 1 44 0 5 1251 902 299 37 60 chr9 87358252 87358660 -36717512 - MTE2a LTR MaLR 0 379 10 5 1251 249 275 14 0 chr9 87358784 87358853 -36717319 + L1MB8 LINE L1 6105 6174 -4 5 1251 312 73 0 0 chr9 87359590 87359631 -36716541 + B2_Mm2 SINE B2 2 42 -153 5 1251 1325 109 0 5 chr9 87359631 87359825 -36716347 - L1_Mm LINE L1 -1016 4867 4675 5 1251 4484 107 0 18 chr9 87359825 87360434 -36715738 + Lx LINE L1 6050 6647 -7 5 1251 30 0 0 0 chr9 87360443 87360473 -36715699 + AT_rich Low_complexity Low_complexity 1 30 0 5 1251 1158 108 6 0 chr9 87360473 87360640 -36715532 + B2_Mm2 SINE B2 27 194 -1 5 1251 706 274 82 36 chr9 87361102 87361432 -36714740 - L1_Rod LINE L1 -6749 423 79 5 1251 342 0 0 0 chr9 87362415 87362453 -36713719 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1251 345 281 11 49 chr9 87362661 87362806 -36713366 + MIR SINE MIR 36 170 -92 5 1251 3986 123 2 5 chr9 87362807 87363434 -36712738 - L1_Mur2 LINE L1 -2004 3873 3249 5 1251 2259 170 10 2 chr9 87363429 87363830 -36712342 + Lx4B LINE L1 4475 4878 -999 5 1251 7674 139 82 12 chr9 87363817 87365643 -36710529 + Lx4B LINE L1 5109 7055 -3 5 1251 1406 55 0 16 chr9 87365645 87365828 -36710344 - L1_Mus2 LINE L1 -320 6246 6067 5 1251 2047 96 32 3 chr9 87365828 87366110 -36710062 + L1_Mus3 LINE L1 6341 6630 -8 5 1251 21 0 0 0 chr9 87366110 87366131 -36710041 + AT_rich Low_complexity Low_complexity 1 21 0 5 1251 236 53 26 0 chr9 87366155 87366193 -36709979 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 5 1251 309 156 0 38 chr9 87366375 87366455 -36709717 + GA-rich Low_complexity Low_complexity 2 78 0 5 1251 374 295 36 22 chr9 87366563 87366924 -36709248 + L1M4 LINE L1 2138 2566 -3580 5 1251 1662 133 11 4 chr9 87366950 87367215 -36708957 + L1_Mur2 LINE L1 4065 4331 -1546 5 1251 3778 106 0 59 chr9 87367215 87367776 -36708396 + Lx LINE L1 6121 6648 -6 5 1251 748 288 122 68 chr9 87367778 87368195 -36707977 + L1M4 LINE L1 2591 3034 -3112 5 1251 5105 40 2 0 chr9 87368195 87368769 -36707403 + L1Md_F2 LINE L1 5996 6570 -12 5 1251 748 288 122 68 chr9 87368769 87369164 -36707008 + L1M4 LINE L1 3035 3447 -2699 5 1251 301 269 92 78 chr9 87369165 87369306 -36706866 + B4 SINE B4 2 144 -148 5 1251 203 0 0 160 chr9 87369331 87369506 -36706666 + (CAGAG)n Simple_repeat Simple_repeat 5 151 0 5 1251 226 311 68 0 chr9 87369583 87369657 -36706515 + B4A SINE B4 210 288 -4 5 1251 341 22 22 0 chr9 87369663 87369709 -36706463 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1251 287 286 6 74 chr9 87369785 87369913 -36706259 + L1M4 LINE L1 3533 3656 -2490 5 1251 649 262 105 12 chr9 87369956 87370149 -36706023 + B3 SINE B2 1 215 -1 5 1251 1407 289 131 67 chr9 87370175 87370332 -36705840 + L1M4 LINE L1 3744 3912 -2234 5 1251 6873 78 41 18 chr9 87370332 87371261 -36704911 + Lx3_Mus LINE L1 6060 7009 0 5 1251 1407 289 131 67 chr9 87371261 87372620 -36703552 + L1M4 LINE L1 3913 5357 -789 5 1251 970 226 34 78 chr9 87372662 87372955 -36703217 + B4A SINE B4 1 280 -12 5 1251 300 267 19 22 chr9 87372997 87373115 -36703057 + L1M4 LINE L1 5488 5603 -575 5 1251 465 312 129 66 chr9 87373181 87373576 -36702596 + L1MC LINE L1 4912 5331 -815 5 1251 296 290 56 40 chr9 87373594 87373748 -36702424 + B4 SINE B4 8 163 -2 5 1251 405 0 0 0 chr9 87373853 87373898 -36702274 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1251 11797 71 11 7 chr9 87373936 87376170 -36700002 - L1Md_F2 LINE L1 -7 6575 4329 5 1251 7288 33 15 1 chr9 87376165 87377032 -36699140 - L1Md_F3 LINE L1 -1 6583 5705 5 1251 6023 40 1 0 chr9 87377031 87377738 -36698434 + L1Md_F3 LINE L1 4992 5699 -184 5 1251 22663 93 18 10 chr9 87377735 87381610 -36694562 - L1Md_F2 LINE L1 -1536 4347 236 5 1251 6223 78 8 0 chr9 87381609 87382442 -36693730 + L1_Mm LINE L1 3271 4110 -1773 5 1251 27394 18 4 9 chr9 87382430 87386460 -36689712 + L1Md_F2 LINE L1 348 4353 -1530 5 1251 3219 11 46 0 chr9 87386460 87386811 -36689361 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1251 49270 20 13 1 chr9 87386821 87393182 -36682990 + IAPEz-int LTR ERVK 35 6475 -6 5 1251 3033 11 46 0 chr9 87393188 87393539 -36682633 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1251 10449 12 0 0 chr9 87393539 87394778 -36681394 + L1Md_F2 LINE L1 4347 5585 -298 5 1251 8739 14 6 0 chr9 87394778 87395768 -36680404 + L1Md_A LINE L1 5587 6582 0 5 1251 10456 76 9 5 chr9 87395768 87397249 -36678923 + L1Md_F2 LINE L1 4097 5585 -298 5 1251 7228 78 4 23 chr9 87397250 87398265 -36677907 + L1Md_F2 LINE L1 5587 6582 0 5 1251 248 213 50 4 chr9 87398384 87398469 -36677703 + L1MC1 LINE L1 6062 6152 -192 5 1251 334 243 31 59 chr9 87398472 87398583 -36677589 + B1_Mur1 SINE Alu 3 148 -1 5 1251 448 286 69 17 chr9 87398595 87398769 -36677403 + L1MC1 LINE L1 6149 6331 -2 5 1251 345 227 0 54 chr9 87398788 87398881 -36677291 + L1M4 LINE L1 5622 5709 -475 5 1251 419 335 158 43 chr9 87399013 87399387 -36676785 - Helitron3Na_Mam RC Helitron -17 469 53 5 1251 189 0 0 0 chr9 87399804 87399825 -36676347 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1251 204 40 0 0 chr9 87400179 87400204 -36675968 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1251 21 0 0 0 chr9 87401669 87401690 -36674482 + AT_rich Low_complexity Low_complexity 1 21 0 5 1251 259 304 113 72 chr9 87401971 87402166 -36674006 + MLT1J-int LTR MaLR 1042 1244 -143 5 1251 4814 144 29 9 chr9 87403164 87403961 -36672211 + Lx4A LINE L1 6245 7057 -1 5 1251 195 344 114 8 chr9 87404388 87404511 -36671661 - MIRm SINE MIR -118 158 23 5 1251 298 346 20 10 chr9 87404709 87404811 -36671361 + MER45A DNA Tip100 42 144 -34 5 1251 223 178 0 0 chr9 87407569 87407614 -36668558 + A-rich Low_complexity Low_complexity 5 49 0 5 1251 2620 63 0 28 chr9 87408002 87408361 -36667811 - L1Md_F2 LINE L1 0 6582 6234 5 1251 293 256 7 107 chr9 87408666 87408806 -36667366 - L1ME3 LINE L1 -122 6040 5915 5 1251 356 289 9 63 chr9 87409470 87409581 -36666591 - B3A SINE B2 0 198 94 5 1251 538 211 60 39 chr9 87409647 87409829 -36666343 - Lx5 LINE L1 -3 7047 6862 5 1251 1092 253 22 29 chr9 87409962 87410239 -36665933 - MTEb LTR MaLR -102 277 3 5 1251 329 314 26 0 chr9 87410241 87410394 -36665778 - L1MA4 LINE L1 -92 6208 6049 5 1251 342 287 108 42 chr9 87410526 87410766 -36665406 - L1M4 LINE L1 -4849 1693 1438 5 1251 447 260 44 104 chr9 87410801 87411119 -36665053 - Tigger7 DNA MER2_type -147 403 232 5 1251 257 285 109 19 chr9 87411225 87411436 -36664736 - L1M4 LINE L1 -5190 1352 1123 5 1251 190 338 26 39 chr9 87412980 87413057 -36663115 - L4 LINE RTE -155 1874 1799 5 1251 302 0 0 26 chr9 87413149 87413188 -36662984 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1251 218 381 78 14 chr9 87413200 87413341 -36662831 + MIR3 SINE MIR 54 203 -5 5 1251 405 285 36 48 chr9 87414020 87414186 -36661986 + RLTR43A LTR ERVK 201 364 0 5 1251 547 322 38 9 chr9 87414186 87414375 -36661797 + MLT1A0 LTR MaLR 197 391 -17 5 1251 260 365 8 45 chr9 87414397 87414529 -36661643 + MIR SINE MIR 28 154 -108 5 1251 680 251 175 32 chr9 87414534 87414843 -36661329 - Tigger7 DNA MER2_type -5 2486 2134 5 1251 496 273 33 8 chr9 87414864 87414986 -36661186 - Tigger7 DNA MER2_type -2356 135 11 5 1251 378 0 0 0 chr9 87416746 87416788 -36659384 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1251 977 268 118 24 chr9 87416840 87417169 -36659003 + MTE2b LTR MaLR 1 360 -19 5 1251 462 197 8 16 chr9 87418083 87418212 -36657960 + CT-rich Low_complexity Low_complexity 2 129 0 5 1251 404 279 288 40 chr9 87418232 87418440 -36657732 - B4A SINE B4 0 292 1 5 1251 392 259 39 66 chr9 87418814 87418996 -36657176 - MIRc SINE MIR -2 266 90 5 1251 277 250 19 146 chr9 87421516 87421619 -36654553 + PB1D9 SINE Alu 21 110 -10 5 1251 1688 252 36 17 chr9 87421952 87422363 -36653809 - MTD LTR MaLR 0 419 1 5 1251 1078 247 99 7 chr9 87422383 87422685 -36653487 + Lx6 LINE L1 6743 7072 -388 5 1251 717 186 38 13 chr9 87422692 87422850 -36653322 + Lx6 LINE L1 7288 7449 -11 5 1251 919 259 78 53 chr9 87423060 87423459 -36652713 + L1M2 LINE L1 5383 5791 -509 5 1251 613 185 22 7 chr9 87423489 87423625 -36652547 - L1MA4 LINE L1 -361 5939 5802 5 1251 243 0 0 0 chr9 87423644 87423671 -36652501 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1252 1923 201 24 19 chr9 87426906 87427321 -36648851 - MTD LTR MaLR 0 419 3 5 1252 276 30 0 0 chr9 87427893 87427926 -36648246 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 5 1252 321 26 0 0 chr9 87428457 87428495 -36647677 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1252 665 110 0 9 chr9 87428495 87428605 -36647567 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1252 938 238 103 9 chr9 87428829 87429160 -36647012 + L1MC LINE L1 2468 2829 -3317 5 1252 199 167 33 16 chr9 87429306 87429367 -36646805 + CT-rich Low_complexity Low_complexity 3 64 0 5 1252 1151 185 210 19 chr9 87430417 87430604 -36645568 - ORR1D1 LTR MaLR 0 374 166 5 1252 549 0 0 0 chr9 87430604 87430665 -36645507 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1252 1151 185 210 19 chr9 87430665 87430791 -36645381 - ORR1D1 LTR MaLR -209 165 3 5 1252 180 419 88 0 chr9 87431361 87431521 -36644651 - MIRb SINE MIR -51 217 44 5 1252 470 268 78 16 chr9 87431583 87431776 -36644396 + L1M4b LINE L1 11 215 -7119 5 1252 2081 282 124 17 chr9 87431867 87431971 -36644201 - RMER1C Other Other -3 1339 1197 5 1252 336 48 0 0 chr9 87431971 87432013 -36644159 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 5 1252 2081 282 124 17 chr9 87432013 87432712 -36643460 - RMER1C Other Other -146 1196 450 5 1252 318 374 115 28 chr9 87433010 87433263 -36642909 + L1M4b LINE L1 429 703 -6631 5 1252 445 290 41 17 chr9 87433290 87433462 -36642710 + L1M4b LINE L1 731 906 -6428 5 1252 349 316 66 33 chr9 87433755 87433876 -36642296 + RMER20A LTR ERVK 1 125 -502 5 1252 389 274 139 77 chr9 87433879 87434073 -36642099 - MT2C_Mm LTR ERVL -264 211 6 5 1252 3985 167 13 51 chr9 87433919 87434689 -36641483 - ORR1B1-int LTR MaLR -1222 741 1 5 1252 2190 141 14 6 chr9 87434689 87435039 -36641133 - ORR1B1 LTR MaLR 0 394 42 5 1252 355 331 68 21 chr9 87435105 87435296 -36640876 + RMER20A LTR ERVK 317 516 0 5 1252 1190 229 58 85 chr9 87435620 87436105 -36640067 + MT2B LTR ERVL 2 540 -61 5 1252 466 93 11 11 chr9 87436105 87436192 -36639980 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1252 332 315 31 23 chr9 87436443 87436573 -36639599 + L1M4b LINE L1 1373 1503 -5831 5 1252 368 240 220 9 chr9 87436746 87436973 -36639199 + L1M4b LINE L1 1690 1964 -5370 5 1252 264 122 0 0 chr9 87437044 87437085 -36639087 + (GGA)n Simple_repeat Simple_repeat 3 43 0 6 1252 619 281 45 25 chr9 87437413 87437570 -36638602 + B3A SINE B2 2 161 -37 6 1252 438 20 0 0 chr9 87437576 87437627 -36638545 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1252 186 133 0 0 chr9 87437632 87437662 -36638510 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 6 1252 397 253 132 0 chr9 87437710 87437876 -36638296 + L1MB4 LINE L1 5931 6118 -62 6 1252 989 118 64 53 chr9 87437919 87437940 -36638232 - B2_Mm1t SINE B2 -2 191 171 6 1252 198 0 0 0 chr9 87437940 87437962 -36638210 + (CTTTA)n Simple_repeat Simple_repeat 2 23 0 6 1252 1142 47 1 61 chr9 87437962 87438128 -36638044 - B2_Mm2 SINE B2 -23 170 2 6 1252 332 398 50 24 chr9 87438130 87438467 -36637705 + L1M4b LINE L1 2151 2496 -4512 5 1252 400 278 23 49 chr9 87438511 87438776 -36637396 + L1M4b LINE L1 2632 2889 -4445 5 1252 24 0 0 0 chr9 87438891 87438915 -36637257 + AT_rich Low_complexity Low_complexity 1 24 0 6 1252 474 245 77 40 chr9 87439092 87439364 -36636808 + L1M4b LINE L1 3097 3378 -3628 5 1252 7324 48 2 5 chr9 87439396 87440338 -36635834 - L1_Mus1 LINE L1 -3 6564 5626 6 1252 894 285 129 50 chr9 87440382 87441356 -36634816 + L1M4b LINE L1 4755 5805 -1201 5 1252 914 286 89 14 chr9 87441358 87441705 -36634467 + Lx8 LINE L1 7091 7463 -10 6 1252 340 305 111 13 chr9 87441732 87442111 -36634061 + L1M4b LINE L1 5803 6218 -788 5 1252 459 0 0 0 chr9 87442177 87442228 -36633944 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1252 324 0 0 0 chr9 87442228 87442263 -36633909 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1252 1744 182 123 5 chr9 87443105 87443480 -36632692 - MTD LTR MaLR 0 419 1 6 1252 2560 166 9 26 chr9 87443665 87444093 -36632079 + MTC LTR MaLR 1 421 0 6 1252 504 247 20 14 chr9 87444871 87444997 -36631175 + B3 SINE B2 6 124 -71 6 1252 459 0 0 0 chr9 87444997 87445048 -36631124 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1252 394 300 20 67 chr9 87445048 87445071 -36631101 + B2_Mm2 SINE B2 125 148 -47 6 1252 534 193 27 0 chr9 87446193 87446343 -36629829 + (TAGA)n Simple_repeat Simple_repeat 2 155 0 6 1252 204 135 0 0 chr9 87446382 87446419 -36629753 + (CATA)n Simple_repeat Simple_repeat 4 40 0 6 1252 227 257 28 19 chr9 87446575 87446682 -36629490 - MER63D DNA AcHobo -871 190 83 6 1252 238 342 172 12 chr9 87446912 87447075 -36629097 - MLT1J LTR MaLR -84 428 240 6 1252 396 0 0 0 chr9 87448312 87448356 -36627816 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1252 209 368 42 34 chr9 87448497 87448615 -36627557 - MIR3 SINE MIR -48 160 42 6 1252 360 138 0 0 chr9 87449683 87449748 -36626424 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1252 4160 62 22 4 chr9 87450410 87450915 -36625257 - L1Md_F3 LINE L1 -10 6574 6061 6 1252 233 325 120 0 chr9 87451275 87451392 -36624780 + MIR3 SINE MIR 54 184 -24 6 1252 22 0 0 0 chr9 87453184 87453206 -36622966 + AT_rich Low_complexity Low_complexity 1 22 0 6 1252 216 0 0 0 chr9 87454078 87454102 -36622070 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1252 227 371 53 33 chr9 87454192 87454437 -36621735 + L2a LINE L2 2926 3175 -251 6 1252 21 0 0 0 chr9 87454666 87454687 -36621485 + AT_rich Low_complexity Low_complexity 1 21 0 6 1252 211 358 46 20 chr9 87454693 87454844 -36621328 + L2a LINE L2 3272 3426 0 6 1252 222 176 0 0 chr9 87455886 87455937 -36620235 + (CATA)n Simple_repeat Simple_repeat 2 52 0 6 1252 499 289 84 59 chr9 87456721 87457008 -36619164 + MER90a LTR ERV1 321 614 0 6 1252 968 261 136 10 chr9 87458810 87459120 -36617052 - Lx8 LINE L1 -152 7321 6973 6 1252 636 77 0 0 chr9 87459699 87459790 -36616382 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1252 235 340 175 14 chr9 87459938 87460081 -36616091 - LTR50 LTR ERVL -299 496 331 6 1252 1080 94 7 0 chr9 87460380 87460518 -36615654 + B1_Mus2 SINE Alu 1 139 -8 6 1252 1229 89 0 11 chr9 87460518 87460700 -36615472 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1252 509 271 30 15 chr9 87460771 87460906 -36615266 + B4 SINE B4 154 290 -2 6 1252 244 224 0 0 chr9 87460968 87461017 -36615155 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1252 446 273 31 27 chr9 87461269 87461428 -36614744 + MLT1C LTR MaLR 228 467 0 6 1252 446 258 246 6 chr9 87461473 87461652 -36614520 - Lx8 LINE L1 -208 7265 7044 6 1252 242 285 32 24 chr9 87461680 87461806 -36614366 + L1M4 LINE L1 3624 3750 -2396 6 1252 296 362 33 24 chr9 87461862 87461980 -36614192 + L1ME3A LINE L1 5919 6040 -133 6 1252 2469 144 48 5 chr9 87461980 87462358 -36613814 - ORR1B1 LTR MaLR 0 394 1 6 1252 296 362 33 24 chr9 87462358 87462451 -36613721 + L1ME3A LINE L1 6041 6132 -41 6 1252 428 300 56 39 chr9 87462728 87462989 -36613183 + ERVL-int LTR ERVL 2135 2503 -3254 6 1252 382 280 19 0 chr9 87463202 87463309 -36612863 + ERVL-int LTR ERVL 2709 2817 -2897 6 1252 310 101 132 92 chr9 87465019 87465095 -36611077 + RLTR25A LTR ERVK 504 582 -521 6 1252 751 71 0 0 chr9 87465040 87465139 -36611033 + B1_Mus2 SINE Alu 49 147 0 6 1252 207 0 0 0 chr9 87465147 87465170 -36611002 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1252 549 277 44 78 chr9 87465222 87465267 -36610905 - B3A SINE B2 0 198 162 6 1252 1620 197 99 14 chr9 87465267 87465448 -36610724 - ORR1D1 LTR MaLR 0 374 175 6 1252 450 0 0 0 chr9 87465448 87465498 -36610674 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1252 1620 197 99 14 chr9 87465498 87465661 -36610511 - ORR1D1 LTR MaLR -200 174 1 6 1252 549 277 44 78 chr9 87465661 87465819 -36610353 - B3A SINE B2 -37 161 2 6 1252 289 92 30 30 chr9 87466964 87467031 -36609141 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 6 1252 534 16 0 0 chr9 87467038 87467101 -36609071 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1252 540 213 59 59 chr9 87467103 87467238 -36608934 - B3 SINE B2 -60 135 1 6 1252 883 202 208 0 chr9 87467895 87468073 -36608099 + B3 SINE B2 2 216 0 6 1252 23 33 0 0 chr9 87468304 87468334 -36607838 + AT_rich Low_complexity Low_complexity 1 30 0 6 1252 38724 42 1 3 chr9 87471502 87477934 -36598238 - L1Md_T LINE L1 0 6585 73 6 1252 1785 221 12 42 chr9 87478194 87478596 -36597576 - Lx8 LINE L1 -873 6600 6211 6 1252 521 289 31 0 chr9 87478610 87478738 -36597434 - B1_Mur2 SINE Alu -15 134 3 6 1252 32 43 0 0 chr9 87478740 87478786 -36597386 + AT_rich Low_complexity Low_complexity 1 46 0 6 1252 1404 291 60 18 chr9 87478789 87479604 -36596568 + Lx8 LINE L1 6595 7466 -7 6 1252 2069 228 24 129 chr9 87479712 87480393 -36595779 + RMER1C Other Other 734 1342 0 6 1252 396 0 0 0 chr9 87480542 87480586 -36595586 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 6 1252 270 179 0 0 chr9 87480912 87480968 -36595204 + G-rich Low_complexity Low_complexity 4 59 0 6 1252 324 0 0 0 chr9 87481539 87481575 -36594597 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1252 457 90 0 71 chr9 87482395 87482479 -36593693 - L1Md_F2 LINE L1 -2 6580 6503 6 1252 3216 15 0 0 chr9 87482479 87482816 -36593356 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1252 23392 22 18 14 chr9 87482816 87485549 -36590623 + IAPEz-int LTR ERVK 8 2751 -3730 6 1252 4466 12 0 0 chr9 87485541 87486027 -36590145 + IAPEz-int LTR ERVK 3244 3729 -2752 6 1252 15235 10 1 1 chr9 87486013 87487667 -36588505 + IAPEz-int LTR ERVK 4827 6481 0 6 1252 2828 18 0 0 chr9 87487667 87487999 -36588173 + IAPLTR1a_Mm LTR ERVK 1 332 -5 6 1252 7194 45 0 2 chr9 87488000 87488849 -36587323 - L1Md_F2 LINE L1 -71 6511 5665 6 1252 2294 130 36 0 chr9 87489082 87489412 -36586760 - ORR1A1 LTR MaLR 0 346 5 6 1252 401 40 0 0 chr9 87489416 87489466 -36586706 - ORR1A1-int LTR MaLR 0 1963 1914 6 1252 276 123 0 219 chr9 87489483 87489556 -36586616 + MT2B LTR ERVL 231 287 -314 6 1252 2937 126 37 7 chr9 87489515 87490373 -36585799 + ORR1A3-int LTR MaLR 718 1684 -279 6 1252 250 240 11 138 chr9 87490351 87490438 -36585734 + RSINE1 SINE B4 90 165 0 6 1252 378 0 0 0 chr9 87490606 87490648 -36585524 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1252 816 57 0 0 chr9 87491150 87491256 -36584916 + (GGA)n Simple_repeat Simple_repeat 1 106 0 6 1252 319 264 53 32 chr9 87491707 87491801 -36584371 + PB1D7 SINE Alu 19 114 -6 6 1252 215 54 50 67 chr9 87491801 87491861 -36584311 + GA-rich Low_complexity Low_complexity 1 59 0 6 1252 234 0 0 0 chr9 87492229 87492255 -36583917 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1252 587 14 14 0 chr9 87492255 87492326 -36583846 + (GA)n Simple_repeat Simple_repeat 1 73 0 6 1252 351 245 29 78 chr9 87492326 87492428 -36583744 - PB1D10 SINE Alu -18 99 3 6 1252 891 237 45 20 chr9 87492463 87492661 -36583511 - B3 SINE B2 -4 212 10 6 1252 186 103 0 0 chr9 87492979 87493008 -36583164 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1252 209 343 19 39 chr9 87493606 87493709 -36582463 - MIR SINE MIR -117 145 45 6 1252 245 183 17 0 chr9 87493872 87493932 -36582240 + CT-rich Low_complexity Low_complexity 2 62 0 6 1252 192 266 0 31 chr9 87493956 87494084 -36582088 + CT-rich Low_complexity Low_complexity 3 126 0 6 1252 22 0 0 0 chr9 87494788 87494810 -36581362 + AT_rich Low_complexity Low_complexity 1 22 0 6 1252 317 315 17 59 chr9 87494838 87494956 -36581216 - B1F SINE Alu -14 135 23 6 1252 3606 58 44 9 chr9 87496632 87497087 -36579085 - L1Md_F2 LINE L1 0 6582 6112 6 1252 238 0 26 51 chr9 87498376 87498415 -36577757 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 1252 423 0 0 0 chr9 87498894 87498941 -36577231 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1252 315 0 0 0 chr9 87498941 87498975 -36577197 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1252 1435 277 136 8 chr9 87499215 87499685 -36576487 + MT2A LTR ERVL 1 530 -3 6 1252 571 130 45 36 chr9 87499698 87499810 -36576362 + MERVL_2A-int LTR ERVL 11 123 -5638 6 1252 721 224 67 0 chr9 87499835 87500000 -36576172 + MERVL_2A-int LTR ERVL 429 604 -5157 6 1252 792 251 10 26 chr9 87500000 87500192 -36575980 + MERVL_2A-int LTR ERVL 605 793 -4968 1 1252 388 301 119 23 chr9 87501796 87501933 -36574239 - MIRb SINE MIR 0 268 127 2 1252 1287 153 0 5 chr9 87501933 87502123 -36574049 + B2_Mm2 SINE B2 1 189 -6 3 1252 388 301 119 23 chr9 87502123 87502203 -36573969 - MIRb SINE MIR -142 126 30 2 1252 28 29 0 0 chr9 87503791 87503826 -36572346 + AT_rich Low_complexity Low_complexity 1 35 0 4 1252 462 246 151 86 chr9 87503880 87504125 -36572047 - B4A SINE B4 -11 281 21 5 1252 344 265 16 57 chr9 87504144 87504268 -36571904 - L1MA7 LINE L1 -2 6289 6171 6 1252 189 0 0 0 chr9 87504409 87504430 -36571742 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1252 693 0 0 0 chr9 87504943 87505020 -36571152 + (TTC)n Simple_repeat Simple_repeat 3 79 0 8 1252 5111 52 3 2 chr9 87505054 87505654 -36570518 - L1Md_F2 LINE L1 -1 6581 5981 9 1252 581 28 14 0 chr9 87505654 87505725 -36570447 + L1Md_F2 LINE L1 5890 5961 -621 9 1252 524 163 8 0 chr9 87506120 87506249 -36569923 + (TGGA)n Simple_repeat Simple_repeat 4 133 0 1 1252 483 292 151 0 chr9 87506604 87506789 -36569383 - ID_B1 SINE B4 -10 214 2 1 1252 24 32 0 0 chr9 87510395 87510426 -36565746 + AT_rich Low_complexity Low_complexity 1 31 0 1 1252 219 342 137 0 chr9 87510591 87510664 -36565508 + PB1D10 SINE Alu 31 113 -4 1 1252 280 322 0 9 chr9 87510733 87510849 -36565323 + L1_Mur3 LINE L1 5124 5238 -905 1 1252 571 133 9 9 chr9 87510864 87510970 -36565202 + GA-rich Low_complexity Low_complexity 2 107 0 1 1252 475 276 149 11 chr9 87510970 87511253 -36564919 + L1_Mur3 LINE L1 5218 5573 -727 1 1252 660 178 38 0 chr9 87511268 87511425 -36564747 + (TATATG)n Simple_repeat Simple_repeat 3 165 0 1 1252 561 236 278 0 chr9 87512195 87512411 -36563761 - MTEb LTR MaLR -58 321 46 1 1252 183 296 9 93 chr9 87513272 87513380 -36562792 + L2b LINE L2 3166 3264 -111 1 1252 1287 131 24 5 chr9 87514189 87514396 -36561776 - Lx LINE L1 -13 6641 6431 1 1252 910 196 368 7 chr9 87514403 87514675 -36561497 + ORR1D2 LTR MaLR 1 370 0 2 1252 253 231 0 0 chr9 87514676 87514728 -36561444 - Lx8 LINE L1 -660 6813 6762 2 1252 300 102 0 0 chr9 87515180 87515229 -36560943 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 2 1252 1637 136 18 55 chr9 87515230 87515503 -36560669 - Lx3A LINE L1 -7 6974 6712 2 1252 5234 94 22 10 chr9 87515503 87516277 -36559895 + Lx3A LINE L1 5936 6718 -263 2 1252 843 315 162 45 chr9 87516302 87516474 -36559698 + MLT1E2 LTR MaLR 1 174 -453 2 1252 2319 39 0 0 chr9 87516474 87516734 -36559438 + L1Md_T LINE L1 6323 6582 0 2 1252 843 315 162 45 chr9 87516734 87517122 -36559050 + MLT1E2 LTR MaLR 175 626 -1 2 1252 1226 285 119 20 chr9 87517338 87517792 -36558380 - Lx9 LINE L1 -528 7116 6618 2 1252 493 308 129 15 chr9 87517807 87518008 -36558164 - B4A SINE B4 -67 225 2 2 1252 4296 49 2 2 chr9 87518170 87518660 -36557512 + L1_Mus1 LINE L1 6078 6567 0 2 1252 191 148 5 0 chr9 87518822 87518857 -36557315 - MIRc SINE MIR -54 154 119 2 1252 261 0 0 0 chr9 87519361 87519390 -36556782 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 3 1252 1765 251 84 7 chr9 87519391 87519844 -36556328 - Lx6 LINE L1 -28 7432 6945 3 1252 237 196 52 35 chr9 87523041 87523099 -36553073 + B4A SINE B4 227 285 -7 3 1252 1036 302 40 44 chr9 87523907 87523971 -36552201 + L1ME5 LINE L1 5380 5438 -756 3 1252 4552 55 0 4 chr9 87523971 87524500 -36551672 - L1_Mus1 LINE L1 -1 6566 6040 3 1252 3576 131 36 58 chr9 87524500 87525784 -36550388 + L1_Mus1 LINE L1 5410 6638 0 3 1252 6855 34 3 0 chr9 87525945 87526704 -36549468 + L1Md_A LINE L1 5820 6580 -2 3 1252 266 216 0 22 chr9 87527280 87527370 -36548802 + (GTGTG)n Simple_repeat Simple_repeat 2 89 0 3 1252 549 237 0 0 chr9 87527374 87527543 -36548629 + (TAGTG)n Simple_repeat Simple_repeat 2 170 0 3 1252 252 0 0 0 chr9 87529802 87529830 -36546342 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 3 1252 740 291 141 25 chr9 87530090 87530417 -36545755 - MLT1A0 LTR MaLR 0 365 1 4 1252 22 70 0 0 chr9 87530623 87530666 -36545506 + AT_rich Low_complexity Low_complexity 1 43 0 4 1252 3741 173 65 32 chr9 87530919 87531616 -36544556 + RMER6D LTR ERVK 1 720 0 4 1252 22 35 0 0 chr9 87531668 87531697 -36544475 + AT_rich Low_complexity Low_complexity 1 29 0 4 1252 823 58 39 47 chr9 87531984 87532111 -36544061 - L1Md_F3 LINE L1 -1 6583 6458 4 1252 706 252 7 7 chr9 87532649 87532797 -36543375 + B1F SINE Alu 2 149 0 4 1252 185 59 0 56 chr9 87532806 87532842 -36543330 + (CAGAGA)n Simple_repeat Simple_repeat 6 39 0 4 1252 247 250 76 38 chr9 87532962 87532975 -36543197 - ID4 SINE ID 0 83 7 4 1252 255 271 0 33 chr9 87532975 87533036 -36543136 - tRNA-Ala-GCA tRNA tRNA -13 62 4 4 1252 314 339 16 8 chr9 87533143 87533265 -36542907 - MER58A DNA MER1_type -30 194 72 4 1252 250 375 21 42 chr9 87533301 87533443 -36542729 - MER5A DNA MER1_type -13 176 38 5 1252 311 44 22 0 chr9 87533590 87533635 -36542537 + (GACTG)n Simple_repeat Simple_repeat 4 49 0 5 1252 278 300 133 30 chr9 87533788 87533953 -36542219 - RMER20B LTR ERVK -306 321 140 5 1252 532 318 50 34 chr9 87534150 87534329 -36541843 - MLT1H2 LTR MaLR -305 184 3 5 1252 311 267 0 0 chr9 87534918 87534978 -36541194 - B3A SINE B2 -123 75 16 5 1252 391 356 0 0 chr9 87534975 87535076 -36541096 + B3 SINE B2 70 170 -46 5 1252 592 353 83 57 chr9 87535943 87536099 -36540073 + MLT1A LTR MaLR 4 175 -199 5 1252 363 23 0 0 chr9 87536099 87536143 -36540029 + (CATCT)n Simple_repeat Simple_repeat 3 46 0 5 1252 592 353 83 57 chr9 87536143 87536335 -36539837 + MLT1A LTR MaLR 176 361 -13 5 1252 3198 145 39 4 chr9 87537987 87538473 -36537699 - Lx4A LINE L1 -6 7052 6550 5 1252 1360 191 119 46 chr9 87538793 87539138 -36537034 - ORR1D1 LTR MaLR -4 370 1 5 1252 1748 26 0 10 chr9 87539570 87539762 -36536410 + B2_Mm1a SINE B2 3 192 -1 6 1252 1896 60 52 0 chr9 87540330 87540563 -36535609 + L1_Mus1 LINE L1 6323 6567 0 6 1252 620 296 108 27 chr9 87540720 87540980 -36535192 - ORR1E LTR MaLR -78 281 1 6 1252 254 350 49 21 chr9 87541236 87541379 -36534793 + Zaphod DNA Tip100 3875 4021 -10 6 1252 372 309 0 0 chr9 87542455 87542539 -36533633 + B4A SINE B4 1 84 -208 6 1252 519 17 0 0 chr9 87542569 87542629 -36533543 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1252 270 0 0 0 chr9 87542629 87542658 -36533514 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1252 617 200 36 0 chr9 87542660 87542770 -36533402 - B1_Mur4 SINE Alu -34 116 3 6 1252 311 0 0 25 chr9 87542783 87542823 -36533349 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1252 189 0 0 0 chr9 87543165 87543186 -36532986 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 6 1252 688 120 0 9 chr9 87543536 87543645 -36532527 - Lx2 LINE L1 -6 6991 6884 7 1252 201 154 0 0 chr9 87545000 87545039 -36531133 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1252 368 20 59 0 chr9 87545457 87545508 -36530664 + (GGGAGA)n Simple_repeat Simple_repeat 1 54 0 7 1252 288 0 0 0 chr9 87546108 87546140 -36530032 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 7 1252 755 232 149 0 chr9 87546480 87546661 -36529511 + B3 SINE B2 2 209 -7 7 1252 425 340 18 70 chr9 87546669 87546941 -36529231 + HAL1 LINE L1 1088 1345 -1162 7 1252 182 174 0 21 chr9 87547014 87547061 -36529111 + A-rich Low_complexity Low_complexity 2 47 0 7 1252 222 37 0 0 chr9 87547107 87547134 -36529038 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1252 766 192 8 0 chr9 87547134 87547264 -36528908 - B1_Mur2 SINE Alu -9 140 10 7 1252 422 129 0 12 chr9 87547759 87547845 -36528327 + (TG)n Simple_repeat Simple_repeat 1 85 0 7 1252 354 74 0 0 chr9 87547880 87547934 -36528238 + (TCTG)n Simple_repeat Simple_repeat 1 54 0 8 1252 21 36 0 0 chr9 87548372 87548400 -36527772 + AT_rich Low_complexity Low_complexity 1 28 0 8 1252 636 14 0 0 chr9 87548942 87549015 -36527157 + (TC)n Simple_repeat Simple_repeat 1 73 0 8 1252 522 0 0 0 chr9 87549015 87549072 -36527100 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1252 364 360 132 40 chr9 87550620 87551149 -36525023 + L2 LINE L2 2501 3078 -341 8 1252 189 237 0 0 chr9 87551172 87551210 -36524962 + MIR SINE MIR 162 199 -63 8 1252 234 310 33 33 chr9 87551716 87551836 -36524336 - L2 LINE L2 -893 2526 2407 8 1252 638 302 10 34 chr9 87552397 87552606 -36523566 + Lx8 LINE L1 6428 6631 -842 8 1252 1734 218 34 0 chr9 87552606 87552960 -36523212 + ORR1D1 LTR MaLR 1 366 -8 8 1252 1570 299 107 38 chr9 87552974 87553631 -36522541 + Lx8 LINE L1 6638 7339 -134 8 1252 2506 142 19 5 chr9 87553942 87554317 -36521855 + Lx2 LINE L1 6612 6991 -6 8 1252 1453 168 179 29 chr9 87554438 87554750 -36521422 + ORR1B2 LTR MaLR 1 359 -8 9 1252 356 265 35 121 chr9 87554869 87554985 -36521187 + B1F SINE Alu 5 110 -39 9 1252 1013 206 196 14 chr9 87555098 87555394 -36520778 - ORR1D1 LTR MaLR -4 370 21 9 1252 449 138 12 0 chr9 87555471 87555551 -36520621 + (TA)n Simple_repeat Simple_repeat 2 82 0 9 1252 251 0 59 0 chr9 87555630 87555664 -36520508 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 9 1252 464 286 14 83 chr9 87555664 87555809 -36520363 - B1F2 SINE Alu -13 136 2 9 1253 258 333 32 32 chr9 87556332 87556425 -36519747 + RSINE1 SINE B4 2 94 -71 9 1253 1163 299 79 35 chr9 87556484 87557558 -36518614 - L1M2 LINE L1 -123 5724 4618 9 1253 180 0 0 0 chr9 87557666 87557686 -36518486 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 1253 503 314 22 22 chr9 87557694 87557831 -36518341 - B1F SINE Alu -8 141 5 9 1253 229 359 9 104 chr9 87557733 87557848 -36518324 - MT2B LTR ERVL -346 255 152 1 1253 403 312 0 35 chr9 87558607 87558723 -36517449 + PB1D10 SINE Alu 1 112 -5 1 1253 318 286 56 113 chr9 87558723 87558741 -36517431 + ID_B1 SINE B4 113 211 -13 1 1253 2666 39 3 9 chr9 87560194 87560527 -36515645 - L1_Mus1 LINE L1 0 6567 6237 1 1253 646 119 34 0 chr9 87561024 87561142 -36515030 + (CATATA)n Simple_repeat Simple_repeat 3 124 0 1 1253 239 333 76 34 chr9 87562084 87562202 -36513970 + Charlie9 DNA MER1_type 4 126 -2631 1 1253 442 267 55 0 chr9 87562234 87562380 -36513792 - L1MA5 LINE L1 -6 6294 6141 1 1253 205 72 22 67 chr9 87562721 87562766 -36513406 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1 1253 21 57 0 0 chr9 87563384 87563419 -36512753 + AT_rich Low_complexity Low_complexity 1 35 0 1 1253 235 342 41 66 chr9 87563677 87563799 -36512373 - PB1D7 SINE Alu -1 119 1 1 1253 248 194 14 127 chr9 87564403 87564474 -36511698 + ORR1E LTR MaLR 1 63 -296 1 1253 348 307 73 115 chr9 87564581 87564868 -36511304 + ORR1E LTR MaLR 79 353 -6 1 1253 253 333 26 13 chr9 87565514 87565666 -36510506 - MIR SINE MIR -21 241 88 1 1253 33759 35 1 0 chr9 87565790 87571641 -36504531 + L1Md_T LINE L1 1 5589 -297 1 1253 9043 5 0 0 chr9 87571641 87572637 -36503535 + L1Md_T LINE L1 5590 6585 0 1 1253 189 0 0 0 chr9 87574057 87574078 -36502094 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 1 1253 315 0 0 0 chr9 87574079 87574114 -36502058 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1253 414 0 0 0 chr9 87574114 87574159 -36502013 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1253 399 98 0 0 chr9 87574626 87574687 -36501485 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1 1253 4798 93 42 13 chr9 87574991 87575699 -36500473 - Lx2 LINE L1 0 6997 6269 1 1253 651 71 0 0 chr9 87577694 87577792 -36498380 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 1253 213 39 0 0 chr9 87577793 87577819 -36498353 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1253 467 297 70 35 chr9 87578099 87578298 -36497874 + MIR SINE MIR 28 233 -29 1 1253 298 224 30 0 chr9 87578628 87578695 -36497477 + ID4_ SINE ID 2 70 -13 1 1253 288 0 0 0 chr9 87580551 87580583 -36495589 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1253 253 308 30 48 chr9 87580614 87580781 -36495391 - Lx9 LINE L1 -233 7411 7248 1 1253 231 61 0 0 chr9 87580814 87580847 -36495325 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1253 463 200 136 0 chr9 87580850 87580960 -36495212 + Lx9 LINE L1 6417 6541 -1103 1 1253 24 32 0 0 chr9 87581038 87581069 -36495103 + AT_rich Low_complexity Low_complexity 1 31 0 1 1253 438 250 152 51 chr9 87581127 87581363 -36494809 + Charlie5 DNA MER1_type 2347 2606 -18 1 1253 254 318 45 18 chr9 87582337 87582449 -36493723 + Kanga1b DNA Tc2 46 160 -619 1 1253 292 319 43 21 chr9 87582469 87582610 -36493562 + Kanga1c DNA Tc2 245 388 -341 1 1253 245 312 83 0 chr9 87582732 87582828 -36493344 - PB1D10 SINE Alu -12 105 2 1 1253 188 284 132 33 chr9 87583120 87583211 -36492961 + L2a LINE L2 3327 3426 0 1 1253 369 276 88 66 chr9 87583375 87583414 -36492758 - B2_Mm2 SINE B2 -9 186 154 1 1253 387 0 0 0 chr9 87583414 87583457 -36492715 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1253 487 252 49 25 chr9 87583457 87583599 -36492573 - B3A SINE B2 -42 153 1 1 1253 665 200 158 76 chr9 87583606 87583694 -36492478 - L1MB3 LINE L1 -51 6132 6049 1 1253 1730 219 91 0 chr9 87583694 87584078 -36492094 - MTD LTR MaLR 0 419 1 1 1253 665 200 158 76 chr9 87584078 87584292 -36491880 - L1MB3 LINE L1 -135 6048 5806 1 1253 184 373 122 18 chr9 87584831 87584995 -36491177 + MIRc SINE MIR 63 243 -25 1 1253 357 322 15 53 chr9 87585676 87585807 -36490365 + RSINE1 SINE B4 1 126 -39 1 1253 3192 125 70 13 chr9 87586020 87586562 -36489610 + Lx2A1 LINE L1 6436 7008 0 1 1253 284 96 0 37 chr9 87586562 87586579 -36489593 + (TAAA)n Simple_repeat Simple_repeat 1 17 0 1 1253 1179 68 0 0 chr9 87586579 87586726 -36489446 + B1_Mm SINE Alu 1 147 0 1 1253 284 96 0 37 chr9 87586726 87586762 -36489410 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1253 1237 98 5 5 chr9 87586814 87586998 -36489174 + ORR1B1 LTR MaLR 211 394 0 1 1253 284 305 61 0 chr9 87587828 87587910 -36488262 + L2a LINE L2 3340 3426 0 1 1253 845 241 30 13 chr9 87588190 87588385 -36487787 + L1MB8 LINE L1 5101 5302 -844 1 1253 288 0 0 0 chr9 87588385 87588417 -36487755 + (TTA)n Simple_repeat Simple_repeat 3 34 0 1 1253 845 251 22 16 chr9 87588417 87588569 -36487603 + L1MB8 LINE L1 5303 5452 -722 1 1253 277 272 36 64 chr9 87588684 87588794 -36487378 + L1MB8 LINE L1 5631 5737 -441 1 1253 290 259 35 9 chr9 87588869 87588982 -36487190 + L1MB8 LINE L1 6053 6168 -10 1 1253 931 214 41 20 chr9 87589081 87589277 -36486895 - B3 SINE B2 -15 201 2 1 1253 323 233 11 0 chr9 87589500 87589590 -36486582 - L1MB3 LINE L1 -310 5873 5783 1 1253 27004 123 13 8 chr9 87590123 87596003 -36480169 + L1_Mus3 LINE L1 725 6638 0 1 1253 203 105 0 50 chr9 87596042 87596082 -36480090 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 1 1253 381 118 0 0 chr9 87596181 87596249 -36479923 - Lx LINE L1 -6 6648 6581 1 1253 183 42 0 0 chr9 87596250 87596274 -36479898 + (CCCCCT)n Simple_repeat Simple_repeat 1 24 0 1 1253 32 26 0 0 chr9 87597577 87597616 -36478556 + AT_rich Low_complexity Low_complexity 1 39 0 1 1253 582 15 0 0 chr9 87598970 87599037 -36477135 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1 1253 784 179 7 20 chr9 87599316 87599464 -36476708 + B1_Mus1 SINE Alu 2 147 -1 1 1253 1192 61 0 0 chr9 87600845 87600992 -36475180 + B1_Mus1 SINE Alu 2 148 0 1 1253 509 304 12 18 chr9 87601143 87601307 -36474865 + RSINE1 SINE B4 3 165 0 1 1253 24 32 0 0 chr9 87601312 87601343 -36474829 + AT_rich Low_complexity Low_complexity 1 31 0 1 1253 208 173 19 37 chr9 87604445 87604499 -36471673 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1 1253 24 32 0 0 chr9 87605593 87605624 -36470548 + AT_rich Low_complexity Low_complexity 1 31 0 1 1253 933 151 74 149 chr9 87605937 87606179 -36469993 - URR1A DNA MER1_type -1 225 2 1 1253 315 0 0 0 chr9 87609245 87609280 -36466892 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1 1253 269 339 61 16 chr9 87609429 87609552 -36466620 - Lx9 LINE L1 -2 7642 7507 1 1253 399 41 0 0 chr9 87609552 87609601 -36466571 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1253 269 339 61 16 chr9 87609601 87609723 -36466449 - Lx9 LINE L1 -138 7506 7386 1 1253 352 318 74 30 chr9 87611120 87611418 -36464754 + L1ME4a LINE L1 5624 5934 -190 1 1253 1059 88 0 0 chr9 87611483 87611712 -36464460 + (TG)n Simple_repeat Simple_repeat 1 229 0 1 1253 820 138 72 0 chr9 87612578 87612716 -36463456 - B1_Mus1 SINE Alu 0 148 1 1 1253 722 167 4 1 chr9 87613461 87613581 -36462591 + B3 SINE B2 3 133 -62 1 1253 209 33 33 0 chr9 87613581 87613611 -36462561 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1253 575 214 99 18 chr9 87613611 87613661 -36462511 + B2_Mm2 SINE B2 134 187 -8 1 1253 3829 60 10 8 chr9 87614165 87614651 -36461521 - L1_Mus2 LINE L1 0 6566 6080 1 1253 564 271 7 7 chr9 87614684 87614825 -36461347 + RSINE1 SINE B4 3 143 -22 1 1253 1023 239 93 26 chr9 87617185 87617528 -36458644 + MLT2D LTR ERVL 1 366 -48 1 1253 211 113 81 0 chr9 87617621 87617683 -36458489 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1253 252 0 0 0 chr9 87623738 87623766 -36452406 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1253 21 36 0 0 chr9 87623933 87623961 -36452211 + AT_rich Low_complexity Low_complexity 1 28 0 1 1253 21 57 0 0 chr9 87625422 87625457 -36450715 + GC_rich Low_complexity Low_complexity 1 35 0 1 1253 219 125 0 0 chr9 87628474 87628514 -36447658 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 1 1253 477 0 0 0 chr9 87628967 87629020 -36447152 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1253 309 82 0 0 chr9 87629161 87629210 -36446962 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1253 291 229 24 12 chr9 87630791 87630875 -36445297 - PB1 SINE Alu 0 127 43 1 1253 186 43 0 0 chr9 87631355 87631378 -36444794 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1253 23 0 0 0 chr9 87636936 87636959 -36439213 + AT_rich Low_complexity Low_complexity 1 23 0 1 1253 233 362 18 36 chr9 87637039 87637205 -36438967 - L4 LINE RTE -88 1941 1779 1 1253 393 22 0 0 chr9 87637289 87637335 -36438837 + (CAG)n Simple_repeat Simple_repeat 1 46 0 1 1253 207 167 0 0 chr9 87637555 87637591 -36438581 + CT-rich Low_complexity Low_complexity 2 37 0 1 1253 238 103 26 0 chr9 87637666 87637705 -36438467 - PB1D7 SINE Alu -15 105 66 1 1253 200 215 0 30 chr9 87638255 87638322 -36437850 + CT-rich Low_complexity Low_complexity 4 68 0 1 1253 204 40 0 0 chr9 87638826 87638851 -36437321 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1253 1388 57 22 6 chr9 87638851 87639029 -36437143 - B2_Mm2 SINE B2 -13 182 2 1 1253 612 262 0 0 chr9 87639095 87639236 -36436936 - ID_B1 SINE B4 -4 220 80 1 1253 23 54 0 0 chr9 87639388 87639425 -36436747 + AT_rich Low_complexity Low_complexity 1 37 0 1 1253 703 231 52 52 chr9 87639426 87639677 -36436495 - Lx8 LINE L1 -6 7467 7217 1 1253 1534 53 5 0 chr9 87640189 87640378 -36435794 - B2_Mm1t SINE B2 -3 190 1 1 1253 198 0 0 0 chr9 87641089 87641111 -36435061 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1253 263 300 77 41 chr9 87642143 87642378 -36433794 + MIRc SINE MIR 11 256 -12 1 1253 236 174 43 0 chr9 87643144 87643190 -36432982 - B1F SINE Alu -10 139 92 1 1253 634 231 0 22 chr9 87643202 87643339 -36432833 - ID_B1 SINE B4 -9 215 82 1 1253 2105 98 105 0 chr9 87643803 87644099 -36432073 - ORR1A2 LTR MaLR 0 327 1 1 1253 1321 214 126 25 chr9 87644324 87644689 -36431483 + MTD LTR MaLR 18 419 0 1 1253 184 250 0 138 chr9 87644989 87645054 -36431118 - MER5A DNA MER1_type -129 60 5 1 1253 267 305 118 53 chr9 87646706 87647045 -36429127 - HAL1 LINE L1 -1074 1433 1073 2 1253 540 0 0 0 chr9 87647091 87647151 -36429021 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1253 230 374 38 57 chr9 87647424 87647634 -36428538 + LTR16D LTR ERVL 224 429 -222 2 1253 390 231 46 9 chr9 87647834 87647943 -36428229 - MER5A1 DNA MER1_type -15 151 39 2 1253 432 0 0 0 chr9 87648166 87648214 -36427958 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 2 1253 1095 100 0 22 chr9 87648218 87648402 -36427770 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1253 243 227 21 93 chr9 87648726 87648823 -36427349 - MER5A1 DNA MER1_type -25 141 52 2 1253 2716 187 50 54 chr9 87649013 87649590 -36426582 + RMER15 LTR ERVL 1 575 0 2 1253 822 259 47 0 chr9 87649917 87650110 -36426062 - MTE2a LTR MaLR -10 369 168 2 1253 396 296 55 18 chr9 87650135 87650245 -36425927 - B1_Mur2 SINE Alu -35 114 1 2 1253 465 298 16 8 chr9 87650250 87650375 -36425797 - MTE2a LTR MaLR -196 183 58 2 1253 246 264 42 0 chr9 87650375 87650447 -36425725 - MTE2a LTR MaLR -281 98 24 2 1253 505 335 41 27 chr9 87651422 87651643 -36424529 - MER58A DNA MER1_type 0 224 1 2 1253 216 333 70 10 chr9 87651668 87651768 -36424404 + PB1D10 SINE Alu 6 111 -6 2 1253 8069 73 2 6 chr9 87652154 87653413 -36422759 - L1_Mus1 LINE L1 0 6567 5323 2 1253 3351 5 0 0 chr9 87653413 87653781 -36422391 + L1Md_A LINE L1 6215 6582 0 2 1253 8069 82 1 27 chr9 87653781 87654304 -36421868 - L1_Mus1 LINE L1 -561 5322 4812 2 1253 235 295 15 23 chr9 87654603 87654735 -36421437 + MamRep4096 DNA hAT? 43 173 -253 2 1253 183 328 17 0 chr9 87657239 87657297 -36418875 - L2b LINE L2 -97 3278 3220 2 1253 495 315 86 39 chr9 87657786 87658219 -36417953 - MERVL_2A-int LTR ERVL -3262 2499 1932 2 1253 27 29 0 0 chr9 87658580 87658614 -36417558 + AT_rich Low_complexity Low_complexity 1 34 0 2 1253 3674 284 38 26 chr9 87658706 87659799 -36416373 - Lx7 LINE L1 -281 7415 6311 2 1253 330 324 9 0 chr9 87659938 87660043 -36416129 - MERVL_2A-int LTR ERVL -3633 1363 1258 2 1253 683 284 46 17 chr9 87660352 87660592 -36415580 - LTR41B LTR ERVL -2 756 510 2 1253 610 293 34 19 chr9 87661571 87661780 -36414392 + ID_B1 SINE B4 9 220 -4 2 1253 243 0 0 0 chr9 87661781 87661808 -36414364 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2 1253 468 382 31 31 chr9 87662340 87662564 -36413608 + LTR33 LTR ERVL 42 265 -250 2 1253 405 0 0 0 chr9 87662739 87662784 -36413388 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1253 340 267 57 49 chr9 87662784 87662906 -36413266 + MIRb SINE MIR 138 260 -8 2 1253 632 266 71 67 chr9 87663731 87664013 -36412159 - B4 SINE B4 -1 291 9 2 1253 252 0 0 0 chr9 87664249 87664277 -36411895 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1253 310 250 64 114 chr9 87664329 87664469 -36411703 - B1_Mur1 SINE Alu 0 149 17 2 1253 185 35 0 65 chr9 87666356 87666387 -36409785 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 2 1253 29 28 0 0 chr9 87667470 87667506 -36408666 + AT_rich Low_complexity Low_complexity 1 36 0 2 1253 1519 181 130 14 chr9 87670744 87671104 -36405068 - MTD LTR MaLR -36 383 3 2 1253 7477 85 31 9 chr9 87671121 87672260 -36403912 - L1_Mus4 LINE L1 -5 6631 5460 2 1253 1433 299 26 24 chr9 87672289 87672710 -36403462 - Lx6 LINE L1 -69 7391 6970 2 1253 1490 267 47 0 chr9 87672722 87673191 -36402981 - Lx6 LINE L1 -574 6886 6179 2 1253 412 295 107 7 chr9 87673356 87673496 -36402676 + RSINE1 SINE B4 2 155 -10 2 1253 399 266 21 0 chr9 87674766 87674860 -36401312 + RSINE1 SINE B4 2 97 -68 2 1253 855 257 4 61 chr9 87676473 87676701 -36399471 + B3 SINE B2 2 216 0 2 1253 214 130 43 0 chr9 87677302 87677374 -36398798 + A-rich Low_complexity Low_complexity 1 75 0 2 1253 3120 144 41 89 chr9 87677512 87678116 -36398056 - RMER15 LTR ERVL 0 575 1 2 1253 281 200 136 12 chr9 87678287 87678368 -36397804 - RMER15 LTR ERVL -13 562 472 2 1253 1405 80 141 0 chr9 87678375 87678574 -36397598 - Lx2 LINE L1 -1090 5907 5681 2 1253 2378 124 1 1 chr9 87678571 87678948 -36397224 + Lx2 LINE L1 5325 5701 -176 2 1253 629 269 21 0 chr9 87679066 87679211 -36396961 + RSINE1 SINE B4 4 151 -14 2 1253 279 0 0 0 chr9 87679630 87679661 -36396511 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1253 522 0 0 0 chr9 87680319 87680377 -36395795 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1253 302 279 11 0 chr9 87680960 87681066 -36395106 - L1M2 LINE L1 -1325 4818 4697 2 1253 1645 298 77 50 chr9 87681361 87682613 -36393559 - L1MA7 LINE L1 -364 5927 4614 2 1253 19222 18 28 28 chr9 87682736 87684351 -36391821 + L1_Mm LINE L1 3253 4912 -971 2 1253 225 183 46 77 chr9 87684351 87684416 -36391756 - RMER20A LTR ERVK -268 248 186 2 1253 19222 18 28 28 chr9 87684416 87685070 -36391102 + L1_Mm LINE L1 4913 5586 -297 2 1253 9613 4 0 0 chr9 87685070 87686096 -36390076 + L1Md_T LINE L1 5587 6582 0 2 1253 5327 13 0 0 chr9 87686096 87686696 -36389476 + L1Md_T LINE L1 4987 5586 -297 2 156 9613 4 0 0 chr9 87686696 87687692 -36388480 + L1Md_T LINE L1 5587 6582 0 2 1254 21 0 0 0 chr9 87687692 87687713 -36388459 + AT_rich Low_complexity Low_complexity 1 21 0 2 1254 5327 13 0 0 chr9 87687713 87688313 -36387859 + L1Md_A LINE L1 4987 5586 -297 2 1254 9338 16 0 0 chr9 87688313 87689309 -36386863 + L1Md_A LINE L1 5587 6582 0 2 1254 590 297 59 21 chr9 87689368 87689708 -36386464 - L1MA7 LINE L1 -1514 4629 4277 2 1254 441 328 51 33 chr9 87689723 87690054 -36386118 - L1_Mur2 LINE L1 -2146 3731 3395 2 1254 207 100 0 0 chr9 87690114 87690144 -36386028 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1254 633 327 7 0 chr9 87690216 87690369 -36385803 - B4A SINE B4 -117 175 22 2 1254 1512 292 110 62 chr9 87690377 87690527 -36385645 - L1_Rod LINE L1 -2502 3345 3200 2 1254 1965 87 18 25 chr9 87690527 87690810 -36385362 - L1Md_F2 LINE L1 -2 6580 6300 2 1254 1512 292 110 62 chr9 87690810 87691874 -36384298 - L1_Rod LINE L1 -2648 3199 2072 2 1254 3815 13 0 0 chr9 87692138 87692534 -36383638 + MTA_Mm LTR MaLR 1 396 0 2 1254 10159 20 1 0 chr9 87692534 87693631 -36382541 + MTA_Mm-int LTR MaLR 1 1098 0 2 1254 3793 15 0 0 chr9 87693631 87694027 -36382145 + MTA_Mm LTR MaLR 1 396 0 2 1254 21 57 0 0 chr9 87694032 87694067 -36382105 + AT_rich Low_complexity Low_complexity 1 35 0 2 1254 230 0 33 0 chr9 87694134 87694164 -36382008 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2 1254 834 179 8 0 chr9 87694164 87694298 -36381874 - B1_Mur4 SINE Alu -13 137 3 2 1254 584 274 67 6 chr9 87694928 87695108 -36381064 + Lx8 LINE L1 6988 7178 -295 2 1254 1306 172 22 13 chr9 87695123 87695371 -36380801 + MTC LTR MaLR 169 406 -15 2 1254 1433 274 53 60 chr9 87695768 87696297 -36379875 + RMER5 LTR ERV1 1 525 -9 2 1254 547 291 74 28 chr9 87696381 87696597 -36379575 - RMER15 LTR ERVL -13 562 337 2 1254 24 0 0 0 chr9 87697244 87697268 -36378904 + AT_rich Low_complexity Low_complexity 1 24 0 2 1254 2128 128 3 118 chr9 87697600 87697972 -36378200 - ORR1A4 LTR MaLR 0 329 1 2 1254 257 250 160 21 chr9 87698807 87698901 -36377271 - MTD LTR MaLR -308 111 5 2 1254 21 36 0 0 chr9 87699118 87699146 -36377026 + AT_rich Low_complexity Low_complexity 1 28 0 2 1254 419 401 38 5 chr9 87699871 87700084 -36376088 - MER58A DNA MER1_type -2 222 3 2 1254 297 301 35 83 chr9 87700209 87700354 -36375818 + MIR SINE MIR 101 238 -24 2 1254 2901 53 0 0 chr9 87701089 87701427 -36374745 - L1_Mus1 LINE L1 0 6567 6230 2 1254 21 0 0 0 chr9 87701794 87701815 -36374357 + AT_rich Low_complexity Low_complexity 1 21 0 2 1254 231 269 23 122 chr9 87704238 87704369 -36371803 - L2a LINE L2 -5 3421 3304 2 1254 492 294 88 58 chr9 87704641 87704908 -36371264 - MLT1E1 LTR MaLR -15 639 343 2 1254 715 55 64 0 chr9 87705189 87705299 -36370873 + L1Md_F3 LINE L1 6468 6584 0 2 1254 1859 201 65 11 chr9 87707259 87707627 -36368545 - MTD LTR MaLR -31 388 1 2 1254 276 268 8 91 chr9 87708636 87708767 -36367405 + PB1D7 SINE Alu 36 146 -3 2 1254 374 299 92 18 chr9 87709787 87710000 -36366172 + MLT1E3 LTR MaLR 6 276 -377 2 1254 36212 35 0 0 chr9 87710000 87715441 -36360731 + L1Md_T LINE L1 52 5589 -297 2 1254 9529 6 0 1 chr9 87715441 87716438 -36359734 + L1Md_T LINE L1 5590 6585 0 2 1254 615 325 118 54 chr9 87716460 87716852 -36359320 + MLT1E3 LTR MaLR 260 651 -2 2 1254 298 292 177 0 chr9 87717513 87717609 -36358563 + ID_B1 SINE B4 84 196 -28 2 1254 216 156 22 22 chr9 87717617 87717663 -36358509 + GA-rich Low_complexity Low_complexity 2 47 0 2 1254 1028 187 119 5 chr9 87717828 87718022 -36358150 - B3 SINE B2 0 216 1 2 1254 34 42 0 0 chr9 87718479 87718527 -36357645 + AT_rich Low_complexity Low_complexity 1 48 0 2 1254 644 259 0 45 chr9 87718883 87719037 -36357135 - RSINE1 SINE B4 -4 161 15 2 1254 482 290 105 29 chr9 87720324 87720601 -36355571 + L1MA9 LINE L1 5762 6059 -253 2 1254 1382 146 211 46 chr9 87720631 87720693 -36355479 + Lx5 LINE L1 6670 6753 -297 2 1254 312 91 0 0 chr9 87720693 87720737 -36355435 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1254 1382 146 211 46 chr9 87720737 87720997 -36355175 + Lx5 LINE L1 6754 7044 -6 2 1254 33357 72 7 1 chr9 87722091 87727551 -36348621 - L1Md_F2 LINE L1 0 6585 996 2 1254 39461 11 0 2 chr9 87727559 87735282 -36340890 - L1Md_A LINE L1 0 6582 1 2 1254 808 198 15 15 chr9 87735274 87735479 -36340693 - L1Md_F2 LINE L1 -5890 837 633 2 1254 317 265 101 16 chr9 87736165 87736282 -36339890 - B3 SINE B2 -76 122 1 2 1254 450 236 71 1 chr9 87736297 87736414 -36339758 - B1_Mus1 SINE Alu -1 147 29 2 1254 473 340 7 7 chr9 87736613 87736761 -36339411 - MLT1J1 LTR MaLR -271 173 26 2 1254 203 311 83 38 chr9 87736801 87736956 -36339216 + MIRb SINE MIR 85 249 -19 2 1254 968 144 158 10 chr9 87737325 87737521 -36338651 - URR1B DNA MER1_type 0 225 1 2 1254 302 269 9 19 chr9 87737555 87737661 -36338511 + L1MA8 LINE L1 5987 6091 -200 2 1254 234 0 0 0 chr9 87737700 87737726 -36338446 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1254 533 308 111 5 chr9 87737751 87737970 -36338202 - B4A SINE B4 -8 284 43 2 1254 1109 180 32 0 chr9 87738059 87738248 -36337924 + B3 SINE B2 1 195 -21 2 1254 213 39 0 0 chr9 87738253 87738279 -36337893 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2 1254 945 50 0 0 chr9 87739174 87739293 -36336879 + (TTCC)n Simple_repeat Simple_repeat 2 120 0 2 1254 242 279 69 79 chr9 87740967 87741068 -36335104 - MIR SINE MIR -22 186 86 3 1254 1190 115 0 6 chr9 87741994 87742169 -36334003 - B2_Mm2 SINE B2 -19 176 3 3 1254 544 171 8 0 chr9 87742258 87742375 -36333797 - Lx9 LINE L1 -9 7635 7518 3 1254 332 392 121 22 chr9 87742579 87742983 -36333189 - L1M5 LINE L1 -473 5767 5324 3 1254 256 329 66 39 chr9 87743026 87743285 -36332887 - L1M5 LINE L1 -1253 4893 4628 3 1254 2070 150 44 98 chr9 87744435 87744841 -36331331 - ORR1C2 LTR MaLR 0 384 1 3 1254 221 0 35 0 chr9 87744860 87744889 -36331283 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 3 1254 671 241 0 14 chr9 87745252 87745399 -36330773 - B1_Mur2 SINE Alu -2 147 3 3 1254 376 346 62 14 chr9 87745889 87746097 -36330075 - MLT1J LTR MaLR -50 462 245 3 1254 445 273 29 54 chr9 87746444 87746618 -36329554 + MIR SINE MIR 10 184 -92 3 1254 198 0 0 0 chr9 87746672 87746694 -36329478 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1254 847 249 257 79 chr9 87746736 87747039 -36329133 - MTEa LTR MaLR 0 379 23 3 1254 772 325 19 22 chr9 87747334 87747764 -36328408 - L1ME3 LINE L1 -286 5876 5440 3 1254 187 264 61 70 chr9 87748262 87748376 -36327796 + MIR SINE MIR 20 132 -76 3 1254 684 88 0 0 chr9 87748430 87748532 -36327640 + Lx2 LINE L1 6547 6648 -349 3 1254 889 134 161 6 chr9 87748527 87748707 -36327465 + Lx2 LINE L1 6775 6982 -15 3 1254 384 302 124 16 chr9 87748989 87749110 -36327062 + RSINE1 SINE B4 2 135 -30 3 1254 219 69 0 0 chr9 87749154 87749183 -36326989 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1254 289 289 0 0 chr9 87750694 87750770 -36325402 + ID_B1 SINE B4 80 155 -69 3 1254 600 14 0 0 chr9 87750807 87750876 -36325296 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1254 435 319 56 25 chr9 87751202 87751398 -36324774 - MIRb SINE MIR -45 223 22 3 1254 232 358 0 16 chr9 87751417 87751565 -36324607 - Lx7 LINE L1 -313 7160 7017 3 1254 267 276 50 50 chr9 87751840 87751920 -36324252 - MER5A DNA MER1_type -109 80 1 3 1254 885 276 51 58 chr9 87753379 87753772 -36322400 - MLT1B LTR MaLR 0 390 1 3 1254 288 299 53 30 chr9 87753773 87753904 -36322268 - MLT1B-int LTR MaLR -1 1370 1237 3 1254 409 328 0 6 chr9 87754517 87754736 -36321436 + (TG)n Simple_repeat Simple_repeat 1 217 0 3 1254 585 96 0 0 chr9 87754755 87754849 -36321323 + (TG)n Simple_repeat Simple_repeat 1 94 0 3 1254 441 0 0 0 chr9 87754849 87754897 -36321275 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1254 2386 138 9 69 chr9 87754930 87755349 -36320823 + ORR1B1 LTR MaLR 1 394 0 3 1254 590 301 141 19 chr9 87756168 87756381 -36319791 - B4A SINE B4 -52 240 2 3 1254 238 326 144 25 chr9 87756544 87756745 -36319427 + Charlie2b DNA MER1_type 2515 2739 -43 3 1254 4821 216 67 23 chr9 87756975 87758039 -36318133 + Lx9 LINE L1 5130 6399 -1245 3 1254 207 0 0 0 chr9 87758039 87758062 -36318110 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1254 4821 182 155 36 chr9 87758062 87758926 -36317246 + Lx9 LINE L1 6400 7323 -321 3 1254 324 0 0 0 chr9 87758926 87758962 -36317210 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1254 4821 182 155 36 chr9 87758962 87759220 -36316952 + Lx9 LINE L1 7324 7638 -6 3 1254 225 0 0 0 chr9 87760520 87760545 -36315627 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1254 287 167 83 0 chr9 87761082 87761154 -36315018 - L1MA6 LINE L1 -4 6296 6219 3 1254 276 30 0 0 chr9 87761278 87761311 -36314861 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1254 333 0 0 0 chr9 87761311 87761347 -36314825 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1254 24 53 0 0 chr9 87761371 87761409 -36314763 + AT_rich Low_complexity Low_complexity 1 38 0 3 1254 1169 51 0 0 chr9 87761452 87761590 -36314582 + B1_Mm SINE Alu 1 138 -9 3 1254 207 349 0 104 chr9 87762129 87762273 -36313899 - L2c LINE L2 -3 3384 3256 3 1254 1033 94 0 7 chr9 87762897 87763037 -36313135 + B1_Mus2 SINE Alu 1 139 -8 3 1254 211 28 56 0 chr9 87763037 87763073 -36313099 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1254 272 200 14 0 chr9 87764356 87764426 -36311746 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1254 269 26 26 0 chr9 87765319 87765357 -36310815 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1254 1070 70 0 7 chr9 87765357 87765494 -36310678 - B1_Mm SINE Alu -7 140 5 3 1254 195 42 0 0 chr9 87765546 87765570 -36310602 + (TCTCTG)n Simple_repeat Simple_repeat 1 24 0 3 1254 1336 147 25 4 chr9 87768244 87768483 -36307689 - Lx2B LINE L1 -4 6996 6753 3 1254 492 359 27 35 chr9 87768882 87769139 -36307033 - B4 SINE B4 -2 290 36 3 1254 24 67 0 0 chr9 87769351 87769396 -36306776 + AT_rich Low_complexity Low_complexity 1 45 0 3 1254 27 0 0 0 chr9 87770938 87770965 -36305207 + AT_rich Low_complexity Low_complexity 1 27 0 3 1254 498 136 0 0 chr9 87771796 87771877 -36304295 + (TC)n Simple_repeat Simple_repeat 1 81 0 3 1254 510 61 0 0 chr9 87772147 87772213 -36303959 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1254 663 148 31 0 chr9 87772685 87772813 -36303359 + ORR1D1 LTR MaLR 2 133 -241 3 1254 1336 206 145 0 chr9 87772813 87773138 -36303034 - ORR1D1 LTR MaLR 0 374 3 3 1254 5483 224 45 25 chr9 87773140 87774482 -36301690 - ORR1D1-int LTR MaLR 0 1370 1 3 1254 1300 195 134 47 chr9 87774482 87774826 -36301346 - ORR1D1 LTR MaLR 0 374 1 3 1254 546 271 14 21 chr9 87775125 87775268 -36300904 - ID_B1 SINE B4 0 224 83 3 1254 285 284 64 96 chr9 87777487 87777513 -36298659 - B2_Mm1t SINE B2 -7 186 161 3 1254 279 0 0 0 chr9 87777513 87777544 -36298628 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1254 597 246 111 7 chr9 87777544 87777704 -36298468 - B3 SINE B2 -46 170 6 3 1254 182 306 39 17 chr9 87778176 87778299 -36297873 - MIRm SINE MIR -4 264 138 3 1254 953 293 92 25 chr9 87778832 87779192 -36296980 - MLT1B LTR MaLR -6 384 1 3 1254 244 283 108 32 chr9 87779534 87779691 -36296481 - L2 LINE L2 -586 2833 2665 3 1254 586 212 85 0 chr9 87779827 87779945 -36296227 + RSINE1 SINE B4 2 129 -36 3 1254 227 334 123 48 chr9 87780039 87780372 -36295800 - L2 LINE L2 -923 2496 2139 3 1254 1893 174 8 69 chr9 87780983 87781360 -36294812 + RLTR15 LTR ERVK 3 356 -3 3 1254 546 93 0 0 chr9 87781470 87781556 -36294616 + (GA)n Simple_repeat Simple_repeat 2 87 0 3 1254 696 24 0 0 chr9 87781556 87781638 -36294534 + (GAA)n Simple_repeat Simple_repeat 3 84 0 3 1254 466 295 112 94 chr9 87781739 87782079 -36294093 + MLT1A LTR MaLR 25 370 -4 3 1254 1010 184 113 13 chr9 87782675 87782906 -36293266 - RMER1B Other Other -6 1060 807 3 1254 552 216 35 0 chr9 87782902 87783018 -36293154 - RMER1B Other Other -903 163 44 3 1254 422 318 82 17 chr9 87784140 87784290 -36291882 + L1ME2 LINE L1 5845 6012 -152 3 1254 432 0 0 0 chr9 87784290 87784338 -36291834 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1254 422 318 82 17 chr9 87784338 87784478 -36291694 + L1ME2 LINE L1 6013 6153 -11 3 1254 1337 156 19 165 chr9 87784741 87785063 -36291109 + RMER19B LTR ERVK 1 275 -627 3 1254 1002 153 88 6 chr9 87785063 87785234 -36290938 - MurERV4_19-int LTR ERVK -4117 1663 1479 3 1254 5591 178 84 2 chr9 87785238 87786491 -36289681 - MurERV4_19-int LTR ERVK -4423 1357 1 3 1254 4446 172 51 74 chr9 87786491 87787414 -36288758 - RMER19B LTR ERVK 0 902 1 3 1254 342 0 0 0 chr9 87788199 87788237 -36287935 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1254 674 359 18 61 chr9 87788242 87788521 -36287651 - B4A SINE B4 -20 272 6 3 1254 324 0 0 0 chr9 87789376 87789412 -36286760 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1254 195 42 0 0 chr9 87790875 87790899 -36285273 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1254 315 311 52 39 chr9 87791848 87792079 -36284093 + L2a LINE L2 3022 3255 -171 3 1254 188 304 18 0 chr9 87792153 87792209 -36283963 + L2a LINE L2 3331 3387 0 3 1254 227 294 136 7 chr9 87792721 87792868 -36283304 + L2 LINE L2 2914 3079 -340 3 1254 270 0 0 0 chr9 87793119 87793149 -36283023 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1254 540 0 0 0 chr9 87793992 87794052 -36282120 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1254 252 0 0 0 chr9 87794573 87794601 -36281571 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 3 1254 545 335 87 23 chr9 87795126 87795392 -36280780 - B4A SINE B4 -1 291 9 3 1254 1663 40 0 57 chr9 87795989 87796201 -36279971 + L1_Mus1 LINE L1 6368 6567 0 3 1254 181 312 64 13 chr9 87796290 87796368 -36279804 - MIR SINE MIR -142 120 39 3 1254 516 281 130 76 chr9 87796881 87797158 -36279014 + B4A SINE B4 1 292 0 3 1254 296 154 0 30 chr9 87797751 87797818 -36278354 + GA-rich Low_complexity Low_complexity 2 66 0 3 1254 297 303 144 19 chr9 87798027 87798242 -36277930 - L1M5 LINE L1 -467 5657 5416 3 1254 234 289 19 85 chr9 87798462 87798568 -36277604 + MER5A DNA MER1_type 40 138 -51 3 1254 2805 101 74 37 chr9 87799202 87799242 -36276930 + Lx2 LINE L1 6549 6581 -416 3 1254 2300 144 50 20 chr9 87799242 87799645 -36276527 + RLTR9F LTR ERVK 1 415 0 3 1254 2805 101 74 37 chr9 87799645 87800037 -36276135 + Lx2 LINE L1 6582 6997 0 3 1254 2109 159 68 3 chr9 87801003 87801368 -36274804 - ORR1B1 LTR MaLR -5 389 1 3 1254 856 276 144 8 chr9 87801509 87801765 -36274407 + B4A SINE B4 2 292 0 3 1254 944 123 0 6 chr9 87801816 87801972 -36274200 + (GAA)n Simple_repeat Simple_repeat 2 156 0 3 1254 1086 119 17 6 chr9 87802558 87802735 -36273437 + L1_Mus3 LINE L1 6460 6638 0 3 1254 1978 146 38 59 chr9 87802858 87803229 -36272943 - ORR1C1 LTR MaLR -15 363 1 3 1254 322 306 0 0 chr9 87806098 87806170 -36270002 + B4A SINE B4 1 72 -220 3 1254 495 315 48 7 chr9 87806181 87806328 -36269844 + B4A SINE B4 115 267 -25 3 1254 473 242 118 29 chr9 87806378 87806514 -36269658 - ORR1D2 LTR MaLR 0 370 223 3 1254 541 257 163 11 chr9 87806892 87807167 -36269005 + Lx8 LINE L1 7152 7468 -5 3 1254 301 314 9 0 chr9 87807557 87807662 -36268510 - MIR SINE MIR -72 190 85 3 1254 332 366 99 31 chr9 87808321 87808544 -36267628 - MamGypLTR1b LTR Gypsy -3 779 542 3 1254 488 214 6 0 chr9 87810516 87810694 -36265478 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1254 515 305 50 33 chr9 87810752 87810993 -36265179 - B4A SINE B4 -46 246 2 3 1254 1786 183 39 60 chr9 87811041 87811424 -36264748 - ORR1B1 LTR MaLR 0 394 20 3 1254 240 284 117 101 chr9 87811697 87811757 -36264415 - MT2B2 LTR ERVL -247 337 198 3 1254 245 276 83 28 chr9 87811757 87811865 -36264307 + YREP_Mm Unknown Unknown 180 293 -1519 3 1254 877 236 26 0 chr9 87811771 87811966 -36264206 - ID_B1 SINE B4 -24 200 1 4 1254 240 284 117 101 chr9 87811865 87811885 -36264287 - MT2B2 LTR ERVL -247 197 147 3 1254 342 259 60 43 chr9 87812779 87812896 -36263276 - Charlie7 DNA MER1_type -2127 485 367 4 1254 463 248 10 29 chr9 87813030 87813134 -36263038 + B3A SINE B2 1 102 -96 4 1254 1247 126 16 11 chr9 87813951 87814136 -36262036 - B2_Mm2 SINE B2 -9 186 1 4 1254 22 0 0 0 chr9 87814146 87814168 -36262004 + AT_rich Low_complexity Low_complexity 1 22 0 4 1254 1079 219 38 13 chr9 87814235 87814471 -36261701 + MTD LTR MaLR 1 242 -177 4 1254 239 349 121 27 chr9 87814766 87815131 -36261041 + L1M5 LINE L1 5420 5818 -376 4 1254 2526 74 134 17 chr9 87817179 87817537 -36258635 - MTB LTR MaLR 0 400 1 4 1254 236 204 19 0 chr9 87817837 87817891 -36258281 - Charlie1 DNA MER1_type -4 2777 2723 4 156 977 298 118 81 chr9 87817882 87818424 -36257748 - Charlie1 DNA MER1_type -240 2541 1988 4 1255 825 270 92 18 chr9 87818424 87818696 -36257476 - B4A SINE B4 0 292 1 4 1255 977 298 118 81 chr9 87818696 87819104 -36257068 - Charlie1 DNA MER1_type -794 1987 1556 4 1255 1330 259 76 0 chr9 87819119 87819420 -36256752 + MTD LTR MaLR 18 341 -78 4 1255 627 325 114 72 chr9 87819978 87820428 -36255744 - MLT1G3 LTR MaLR -8 587 116 4 1255 3264 73 14 12 chr9 87820428 87820856 -36255316 + L1Md_F2 LINE L1 6154 6582 0 4 1255 627 325 114 72 chr9 87820856 87820922 -36255250 - MLT1G3 LTR MaLR -480 115 49 4 1255 4003 140 83 2 chr9 87822689 87823304 -36252868 - Lx4A LINE L1 0 7058 6394 4 1255 830 277 15 20 chr9 87823439 87823638 -36252534 - B3A SINE B2 0 198 1 4 1255 267 397 80 50 chr9 87823661 87823963 -36252209 + MLT1H LTR MaLR 112 422 -127 4 1255 556 347 87 19 chr9 87824117 87824484 -36251688 - MLT1A1 LTR MaLR -15 393 2 4 1255 246 62 0 0 chr9 87824782 87824814 -36251358 + (GGA)n Simple_repeat Simple_repeat 3 34 0 4 1255 861 10 0 0 chr9 87824814 87824912 -36251260 + (GA)n Simple_repeat Simple_repeat 1 98 0 4 1255 512 288 91 64 chr9 87825994 87826291 -36249881 - MLT1A0 LTR MaLR -22 343 39 4 1255 28 0 0 0 chr9 87828848 87828876 -36247296 + AT_rich Low_complexity Low_complexity 1 28 0 4 1255 1390 223 95 3 chr9 87829030 87829345 -36246827 - MTD LTR MaLR -58 361 18 4 1255 193 381 0 10 chr9 87829403 87829501 -36246671 - MIR SINE MIR -134 128 32 4 1255 8381 73 1 0 chr9 87829731 87831642 -36244530 + L1Md_F2 LINE L1 415 2327 -3556 4 1255 7941 69 45 2 chr9 87831641 87833186 -36242986 + L1Md_F2 LINE L1 4911 6636 0 4 1255 2205 120 91 37 chr9 87833671 87834078 -36242094 + Lx LINE L1 6226 6654 0 4 1255 567 144 0 0 chr9 87834102 87834199 -36241973 + (GGAA)n Simple_repeat Simple_repeat 1 97 0 4 1255 605 47 0 34 chr9 87834362 87834450 -36241722 - B1_Mus2 SINE Alu 0 147 63 4 1255 190 323 75 66 chr9 87835880 87835986 -36240186 + MIRb SINE MIR 86 192 -76 4 1255 1053 241 82 3 chr9 87835986 87836308 -36239864 - RCHARR1 DNA MER1_type -10 964 617 4 1255 798 278 39 110 chr9 87836308 87836430 -36239742 + MTE2b LTR MaLR 1 111 -268 4 1255 2597 130 17 17 chr9 87836430 87836837 -36239335 + MTB_Mm LTR MaLR 1 407 0 4 1255 939 276 65 26 chr9 87836837 87837122 -36239050 + MTE2b LTR MaLR 80 379 0 4 1255 702 168 92 78 chr9 87837122 87837200 -36238972 - RCHARR1 DNA MER1_type -362 612 538 4 1255 693 0 0 0 chr9 87837200 87837277 -36238895 + (TTC)n Simple_repeat Simple_repeat 2 78 0 4 1255 702 168 92 78 chr9 87837277 87837401 -36238771 - RCHARR1 DNA MER1_type -437 537 407 4 1255 746 279 87 30 chr9 87837428 87837694 -36238478 - RCHARR1 DNA MER1_type -691 283 3 4 1255 1184 57 0 6 chr9 87838025 87838183 -36237989 + (TCC)n Simple_repeat Simple_repeat 3 159 0 4 1255 21 0 0 0 chr9 87838817 87838838 -36237334 + AT_rich Low_complexity Low_complexity 1 21 0 4 1255 612 40 0 0 chr9 87838893 87838968 -36237204 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1255 370 355 58 54 chr9 87838997 87839238 -36236934 - B4A SINE B4 -49 243 2 4 1255 253 336 35 0 chr9 87839338 87839451 -36236721 - MIR SINE MIR -141 121 5 4 1255 38925 29 1 0 chr9 87840360 87847231 -36228941 - L1Md_T LINE L1 0 6585 1 4 1255 23 54 0 0 chr9 87847605 87847642 -36228530 + AT_rich Low_complexity Low_complexity 1 37 0 4 1255 287 289 38 19 chr9 87847644 87847750 -36228422 - Lx7 LINE L1 -18 7678 7571 4 1255 207 235 0 0 chr9 87847834 87847885 -36228287 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1255 602 280 83 43 chr9 87847891 87848193 -36227979 - Lx7 LINE L1 -394 7302 6989 4 1255 580 215 138 51 chr9 87848413 87848739 -36227433 + MTD LTR MaLR 1 418 -1 4 1255 246 275 14 0 chr9 87849315 87849384 -36226788 + LTR33B LTR ERVL 367 436 -67 4 1255 806 323 95 53 chr9 87852251 87852702 -36223470 - MLT1J LTR MaLR -38 474 5 4 1255 719 22 11 0 chr9 87854674 87854763 -36221409 + (TC)n Simple_repeat Simple_repeat 1 90 0 4 1255 243 0 0 0 chr9 87854764 87854791 -36221381 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1255 827 133 0 7 chr9 87854866 87855008 -36221164 + RMER19C LTR ERVK 1 141 -596 4 1255 6730 75 29 17 chr9 87855008 87855107 -36221065 + RLTR13D5 LTR ERVK 1 97 -926 4 1255 727 28 94 0 chr9 87855107 87855213 -36220959 - L1_Mus1 LINE L1 -1 6566 6451 4 1255 6730 75 29 17 chr9 87855213 87856124 -36220048 + RLTR13D5 LTR ERVK 98 1023 0 4 1255 1112 251 53 130 chr9 87856124 87856632 -36219540 + RMER19C LTR ERVK 143 611 0 4 1255 237 297 0 0 chr9 87857247 87857311 -36218861 + (CAT)n Simple_repeat Simple_repeat 3 66 0 4 1255 23 0 0 0 chr9 87857986 87858009 -36218163 + AT_rich Low_complexity Low_complexity 1 23 0 4 1255 1199 61 0 32 chr9 87858365 87858551 -36217621 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1255 729 196 6 23 chr9 87858642 87858819 -36217353 + MER121 Unknown Unknown 91 264 -148 4 1255 238 333 0 83 chr9 87862199 87862271 -36213901 + ID4_ SINE ID 5 70 -13 4 1255 304 216 21 0 chr9 87862277 87862374 -36213798 + GA-rich Low_complexity Low_complexity 1 99 0 4 1255 447 328 130 20 chr9 87863818 87864210 -36211962 + MLT1L LTR MaLR 172 606 -4 4 1255 446 272 70 17 chr9 87864806 87864960 -36211212 - MLT1I LTR MaLR -310 202 1 4 1255 857 177 8 7 chr9 87865996 87866151 -36210021 + ORR1C1 LTR MaLR 7 163 -215 4 1255 495 0 0 0 chr9 87866151 87866206 -36209966 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1255 703 227 190 66 chr9 87866206 87866354 -36209818 + ORR1C1 LTR MaLR 146 313 -16 4 1255 267 305 0 0 chr9 87866424 87866483 -36209689 - B4A SINE B4 -148 144 86 4 1255 2687 217 14 35 chr9 87868687 87869265 -36206907 + Lx5 LINE L1 6480 7045 -5 4 1255 666 85 0 0 chr9 87869621 87869715 -36206457 + (GA)n Simple_repeat Simple_repeat 1 94 0 4 1255 633 301 147 69 chr9 87871164 87871668 -36204504 + MLT1F1 LTR MaLR 13 555 -14 4 1255 237 312 93 10 chr9 87872047 87872144 -36204028 + MLT1A0 LTR MaLR 1 105 -303 4 1255 386 225 110 27 chr9 87872409 87872555 -36203617 + MLT1A0 LTR MaLR 208 365 0 4 1255 521 325 114 11 chr9 87873322 87873674 -36202498 - MLT1B LTR MaLR 0 390 3 4 1255 7265 33 0 4 chr9 87873794 87874619 -36201553 - RLTR13B2 LTR ERVK 0 822 1 4 1255 227 276 61 10 chr9 87875550 87875649 -36200523 - MLT1D LTR MaLR -332 173 70 4 1255 600 186 0 0 chr9 87876370 87876547 -36199625 + GA-rich Low_complexity Low_complexity 2 178 0 4 1255 202 120 80 0 chr9 87876557 87876607 -36199565 + (CAGAGA)n Simple_repeat Simple_repeat 1 54 0 4 1255 270 0 0 0 chr9 87876930 87876960 -36199212 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1255 425 371 50 39 chr9 87877502 87877760 -36198412 + B4A SINE B4 32 292 0 4 1255 347 127 16 0 chr9 87877787 87877850 -36198322 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1255 182 371 34 0 chr9 87878192 87878281 -36197891 - MIRm SINE MIR -147 129 38 4 1255 273 170 0 0 chr9 87878427 87878480 -36197692 + L2a LINE L2 3369 3421 -5 4 1255 21 0 0 0 chr9 87879889 87879910 -36196262 + AT_rich Low_complexity Low_complexity 1 21 0 4 1255 218 229 33 0 chr9 87880151 87880212 -36195960 + GA-rich Low_complexity Low_complexity 4 66 0 4 1255 270 81 0 0 chr9 87880353 87880390 -36195782 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1255 759 193 0 21 chr9 87881332 87881475 -36194697 + B1_Mur2 SINE Alu 4 143 -6 4 1255 2523 131 13 3 chr9 87882526 87882915 -36193257 + ORR1B1 LTR MaLR 1 393 -1 4 1255 5113 32 0 5 chr9 87883668 87884265 -36191907 + L1Md_F2 LINE L1 5989 6582 0 4 1255 307 312 54 74 chr9 87884540 87884689 -36191483 - B1F SINE Alu -3 146 1 4 1255 459 0 0 0 chr9 87886336 87886387 -36189785 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1255 411 316 120 46 chr9 87887186 87887402 -36188770 + B4A SINE B4 2 233 -59 4 1255 483 18 0 0 chr9 87887601 87887657 -36188515 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1255 318 277 24 12 chr9 87887774 87887858 -36188314 + B4A SINE B4 185 269 -23 4 1255 180 0 0 0 chr9 87887858 87887878 -36188294 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1255 343 320 196 43 chr9 87888294 87889006 -36187166 + L2a LINE L2 2547 3372 -54 4 1255 248 309 51 10 chr9 87889738 87889836 -36186336 + L2 LINE L2 2424 2525 -894 4 1255 1121 121 18 0 chr9 87889844 87890010 -36186162 - B2_Mm2 SINE B2 -26 169 1 4 1255 216 275 294 5 chr9 87890012 87890206 -36185966 + L2 LINE L2 2517 2766 -653 4 1255 690 318 109 39 chr9 87890210 87890642 -36185530 + MLT1C LTR MaLR 6 467 0 4 1255 745 245 27 7 chr9 87891944 87892092 -36184080 + B3A SINE B2 18 168 -30 4 1255 396 0 0 0 chr9 87892103 87892147 -36184025 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1255 1100 261 45 4 chr9 87892199 87892468 -36183704 + B4A SINE B4 2 281 -11 4 1255 252 0 0 0 chr9 87892486 87892514 -36183658 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1255 705 82 0 0 chr9 87893124 87893221 -36182951 + (TATG)n Simple_repeat Simple_repeat 2 98 0 4 1255 822 162 71 27 chr9 87893324 87893508 -36182664 - B2_Mm2 SINE B2 -3 192 1 4 1255 311 321 23 97 chr9 87893882 87894058 -36182114 + MLT1G LTR MaLR 429 591 0 4 1255 372 372 74 66 chr9 87894103 87894483 -36181689 + MLT1G3 LTR MaLR 1 383 -212 4 1255 225 211 115 0 chr9 87895239 87895291 -36180881 - Tigger15a DNA TcMar -12 703 646 4 1255 370 287 70 0 chr9 87895942 87896071 -36180101 + MER58B DNA MER1_type 174 311 -30 4 1255 243 295 0 0 chr9 87896424 87896485 -36179687 - L2 LINE L2 -660 2759 2699 5 1255 2856 15 0 44 chr9 87896719 87897061 -36179111 + IAPLTR2b LTR ERVK 1 327 0 5 1255 349 317 18 32 chr9 87897147 87897300 -36178872 + MIRc SINE MIR 2 150 -58 5 1255 706 57 40 16 chr9 87897424 87897549 -36178623 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 5 1255 429 358 71 21 chr9 87897748 87897879 -36178293 + RSINE1 SINE B4 19 158 -7 5 1255 279 122 0 0 chr9 87897879 87897928 -36178244 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 5 1255 407 327 30 60 chr9 87898051 87898217 -36177955 + RSINE1 SINE B4 5 165 0 5 1255 369 250 21 0 chr9 87898248 87898344 -36177828 - MLT1A0 LTR MaLR -47 318 221 5 1255 2308 158 157 116 chr9 87898564 87899151 -36177021 + RMER19C LTR ERVK 1 611 0 5 1255 2760 174 48 2 chr9 87899962 87900508 -36175664 + RMER15 LTR ERVL 4 574 -1 5 1255 230 261 171 0 chr9 87900694 87900782 -36175390 + Tigger15a DNA TcMar 587 689 -26 5 1255 1356 281 50 14 chr9 87901958 87902603 -36173569 - L1MA5A LINE L1 -1571 5902 5254 5 1255 34014 27 14 21 chr9 87902698 87907165 -36169007 + L1Md_A LINE L1 441 4927 -956 5 1255 228 183 46 77 chr9 87907165 87907230 -36168942 - RMER20A LTR ERVK -268 248 186 5 1255 34014 27 14 21 chr9 87907230 87907884 -36168288 + L1Md_A LINE L1 4928 5586 -297 5 1255 8597 29 0 0 chr9 87907884 87908880 -36167292 + L1Md_T LINE L1 5587 6582 0 5 1255 1248 41 0 0 chr9 87909518 87909665 -36166507 - B1_Mus2 SINE Alu 0 147 1 5 1255 183 349 35 60 chr9 87909763 87909879 -36166293 + MIRb SINE MIR 74 186 -82 5 1255 396 103 0 0 chr9 87911446 87911504 -36164668 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 5 1255 234 224 77 58 chr9 87911580 87911684 -36164488 - B4A SINE B4 -59 233 128 5 1255 4746 101 3 0 chr9 87911989 87912842 -36163330 - L1_Mus4 LINE L1 -698 5938 5083 5 1255 245 268 48 12 chr9 87912966 87913049 -36163123 - MTEb LTR MaLR -15 364 279 5 1255 3012 257 98 17 chr9 87913598 87914446 -36161726 - RMER1A Other Other -5 1025 96 5 1255 2825 139 6 30 chr9 87914446 87914921 -36161251 - RMER4A LTR ERVK -2 464 1 5 1255 3012 283 38 34 chr9 87914921 87915248 -36160924 - RMER1A Other Other -679 351 8 5 1255 1379 265 75 69 chr9 87915334 87915903 -36160269 - RMER1B Other Other -551 515 15 5 1255 22 56 0 0 chr9 87916550 87916586 -36159586 + AT_rich Low_complexity Low_complexity 1 36 0 5 1255 339 85 0 0 chr9 87916808 87916855 -36159317 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1255 188 303 136 0 chr9 87917212 87917278 -36158894 + MIR SINE MIR 63 137 -71 5 1255 911 276 163 6 chr9 87917301 87917633 -36158539 + MLT1B LTR MaLR 1 384 -6 5 1255 253 235 20 20 chr9 87919521 87919621 -36156551 + GA-rich Low_complexity Low_complexity 3 102 0 5 1255 345 194 45 27 chr9 87920360 87920471 -36155701 + L1MA6 LINE L1 6177 6289 -11 5 1255 573 83 0 0 chr9 87922011 87922095 -36154077 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 1255 742 290 113 33 chr9 87922097 87922547 -36153625 + L1MA4 LINE L1 5662 6147 -153 5 1255 499 171 9 9 chr9 87922951 87923063 -36153109 - Lx2B LINE L1 -2 6998 6887 5 1255 282 294 29 7 chr9 87923087 87923224 -36152948 + L1MA4 LINE L1 6154 6293 -7 5 1255 707 257 116 16 chr9 87923255 87923445 -36152727 - B3 SINE B2 -7 209 1 5 1255 484 330 98 85 chr9 87924200 87924809 -36151363 + L1MEd LINE L1 503 1119 -5000 5 1255 257 300 32 39 chr9 87924999 87925155 -36151017 + L1ME2z LINE L1 6287 6441 -3 5 1255 1161 270 105 27 chr9 87926524 87927073 -36149099 - Lx6 LINE L1 0 7460 6484 5 1255 560 272 58 29 chr9 87927076 87927250 -36148922 - Lx6 LINE L1 -688 6362 6184 5 1255 2549 181 52 10 chr9 87927256 87928042 -36148130 + Lx6 LINE L1 5325 6142 -1318 5 1255 789 337 0 0 chr9 87928392 87928591 -36147581 + B4 SINE B4 90 288 -4 5 1255 414 0 0 0 chr9 87928642 87928688 -36147484 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1255 1830 181 15 87 chr9 87928693 87929097 -36147075 + ORR1B1 LTR MaLR 20 394 0 5 1255 1242 108 0 11 chr9 87930083 87930261 -36145911 + B2_Mm2 SINE B2 4 179 -16 5 1255 576 0 0 0 chr9 87930264 87930328 -36145844 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 5 1255 2293 170 70 22 chr9 87930382 87930827 -36145345 - RMER4A LTR ERVK 0 466 1 5 1255 284 246 131 0 chr9 87931168 87931229 -36144943 + ID4 SINE ID 5 73 -10 5 1255 768 10 0 29 chr9 87931235 87931339 -36144833 + (GGGA)n Simple_repeat Simple_repeat 4 104 0 5 1255 579 263 14 14 chr9 87931396 87931535 -36144637 + ID_B1 SINE B4 81 219 -5 5 1255 277 273 13 13 chr9 87932056 87932134 -36144038 + BC1_Mm scRNA scRNA 25 102 -50 5 1255 777 306 74 15 chr9 87933225 87933550 -36142622 - Lx8 LINE L1 -181 7292 6949 5 1255 214 314 0 0 chr9 87933779 87933849 -36142323 + polypurine Low_complexity Low_complexity 1 70 0 5 1255 256 289 59 42 chr9 87934575 87934694 -36141478 - ORR1E LTR MaLR -216 143 23 5 1255 226 297 0 99 chr9 87934691 87934762 -36141410 + RSINE1 SINE B4 99 162 -3 5 1255 366 326 43 0 chr9 87934888 87935029 -36141143 + MLT1A1 LTR MaLR 262 408 0 5 1255 217 320 96 10 chr9 87936373 87936477 -36139695 - MIR SINE MIR -112 150 38 5 1255 791 205 108 94 chr9 87936490 87936804 -36139368 - ORR1D2-int LTR MaLR -611 647 243 5 1255 5458 205 69 23 chr9 87936812 87938227 -36137945 - Lx9 LINE L1 -8 7636 6157 5 1255 1288 191 25 54 chr9 87938282 87938559 -36137613 + RLTR12B LTR ERVK 226 494 -34 5 1255 6783 255 89 98 chr9 87938569 87938685 -36137487 + MYSERV-int LTR ERVK 2830 2936 -3614 5 1255 1088 83 7 0 chr9 87938685 87938830 -36137342 + B1_Mus2 SINE Alu 2 147 0 5 1255 6783 255 89 98 chr9 87938830 87940269 -36135903 + MYSERV-int LTR ERVK 2937 4308 -2242 5 1255 266 0 29 0 chr9 87940269 87940303 -36135869 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1255 6783 250 79 89 chr9 87940303 87941692 -36134480 + MYSERV-int LTR ERVK 4309 5714 -836 5 1255 570 15 0 0 chr9 87941692 87941759 -36134413 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 5 1255 6783 255 89 98 chr9 87941759 87942210 -36133962 + MYSERV-int LTR ERVK 5715 6197 -353 5 1255 439 252 8 8 chr9 87942208 87942332 -36133840 + MYSERV-int LTR ERVK 6427 6550 0 5 1255 2841 162 13 41 chr9 87942332 87942873 -36133299 + RLTR12B LTR ERVK 1 526 -2 5 1255 683 256 60 19 chr9 87942876 87943091 -36133081 - ORR1D2-int LTR MaLR -1034 224 1 5 1255 230 209 27 82 chr9 87943080 87943153 -36133019 - ORR1D2 LTR MaLR -1 369 301 5 1255 523 286 8 0 chr9 87943154 87943280 -36132892 + B3 SINE B2 81 207 -9 5 1255 251 333 0 0 chr9 87943327 87943414 -36132758 + MER2B DNA MER2_type 210 296 -40 5 1255 218 192 47 20 chr9 87945066 87945215 -36130957 + (TA)n Simple_repeat Simple_repeat 1 153 0 5 1255 788 39 19 0 chr9 87945843 87945946 -36130226 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 5 1255 298 204 0 22 chr9 87948124 87948214 -36127958 + CT-rich Low_complexity Low_complexity 4 91 0 5 1255 21 0 0 0 chr9 87948618 87948639 -36127533 + AT_rich Low_complexity Low_complexity 1 21 0 5 1255 273 217 72 0 chr9 87948865 87948934 -36127238 - LTR33A LTR ERVL -446 74 1 5 1256 1115 285 84 6 chr9 87950552 87950898 -36125274 - MTEa LTR MaLR -6 373 1 5 1256 569 281 106 77 chr9 87951041 87951390 -36124782 + MLT2B4 LTR ERVL 4 348 -66 5 1256 212 245 19 0 chr9 87951512 87951565 -36124607 + (TCTG)n Simple_repeat Simple_repeat 1 54 0 5 1256 24 100 0 0 chr9 87951835 87951915 -36124257 + AT_rich Low_complexity Low_complexity 1 80 0 5 1256 195 333 44 0 chr9 87952628 87952718 -36123454 - MIRb SINE MIR -52 216 123 5 1256 256 237 51 38 chr9 87952804 87952883 -36123289 + PB1D10 SINE Alu 13 92 -25 5 1256 3022 198 57 7 chr9 87953899 87954544 -36121628 + RMER1A Other Other 43 870 -160 5 1256 204 40 0 0 chr9 87954544 87954569 -36121603 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1256 2897 224 73 6 chr9 87954569 87954685 -36121487 + RMER1B Other Other 949 1066 0 5 1256 259 343 0 19 chr9 87954758 87954865 -36121307 + (CATA)n Simple_repeat Simple_repeat 4 108 0 5 1256 1172 213 117 36 chr9 87955924 87956231 -36119941 - Lx8 LINE L1 -333 7140 6809 5 1256 1255 230 77 21 chr9 87956232 87956570 -36119602 + ORR1D2 LTR MaLR 3 359 -11 5 1256 1643 233 54 23 chr9 87956571 87956962 -36119210 - Lx8 LINE L1 -665 6808 6406 5 1256 276 100 0 0 chr9 87956969 87957009 -36119163 + (GGA)n Simple_repeat Simple_repeat 3 42 0 5 1256 2205 182 51 144 chr9 87957113 87957359 -36118813 + RMER6D LTR ERVK 1 260 -460 5 1256 2931 64 0 0 chr9 87957359 87957718 -36118454 + L1_Mus1 LINE L1 6209 6567 0 5 1256 2205 182 51 144 chr9 87957718 87958261 -36117911 + RMER6D LTR ERVK 261 716 -4 5 1256 304 336 25 66 chr9 87961288 87961409 -36114763 + RSINE1 SINE B4 18 133 -32 5 1256 351 127 0 0 chr9 87961413 87961476 -36114696 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1256 670 213 63 0 chr9 87961555 87961682 -36114490 + B1_Mur4 SINE Alu 2 136 -14 5 1256 795 10 9 19 chr9 87961682 87961788 -36114384 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 5 1256 277 261 15 0 chr9 87962516 87962581 -36113591 + U4 snRNA snRNA 3 68 -77 5 1256 216 111 48 0 chr9 87962680 87962743 -36113429 + (TTTG)n Simple_repeat Simple_repeat 2 67 0 5 1256 254 340 28 37 chr9 87962794 87962901 -36113271 - B1F1 SINE Alu -43 106 1 5 1256 264 292 14 0 chr9 87966425 87966497 -36109675 + ID SINE ID 2 74 -150 5 1256 484 316 14 0 chr9 87966650 87966789 -36109383 - ID_B1 SINE B4 0 224 84 5 1256 207 298 0 0 chr9 87966790 87966847 -36109325 + MER5B DNA MER1_type 117 173 -5 5 1256 330 26 0 0 chr9 87967451 87967490 -36108682 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1256 683 147 11 11 chr9 87967669 87967848 -36108324 + CT-rich Low_complexity Low_complexity 2 180 0 5 1256 513 47 0 0 chr9 87967848 87967912 -36108260 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1256 1130 278 35 32 chr9 87969785 87970160 -36106012 + MTE2a LTR MaLR 1 376 -3 5 1256 1900 162 2 48 chr9 87972392 87972788 -36103384 + Lx LINE L1 6277 6654 0 5 1256 1087 255 84 30 chr9 87972950 87973285 -36102887 - ORR1E LTR MaLR -6 353 1 5 1256 1685 268 112 26 chr9 87973285 87973813 -36102359 - MTE-int LTR MaLR -53 1527 953 5 1256 1901 152 69 14 chr9 87974172 87974520 -36101652 - ORR1B2 LTR MaLR 0 367 1 5 1256 496 234 73 34 chr9 87974555 87974732 -36101440 + Lx8 LINE L1 7290 7473 0 6 1256 3785 240 117 16 chr9 87975340 87976252 -36099920 + RMER1A Other Other 3 1006 -24 6 1256 914 271 38 28 chr9 87976269 87976558 -36099614 - B4A SINE B4 0 292 1 6 1256 284 232 161 18 chr9 87978732 87978885 -36097287 - MIR SINE MIR -89 179 1 6 1256 446 0 0 18 chr9 87980669 87980724 -36095448 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6 1256 838 104 14 7 chr9 87981790 87981935 -36094237 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 6 1256 1013 187 85 59 chr9 87981942 87982249 -36093923 - Lx7 LINE L1 0 7696 7382 6 1256 392 222 9 0 chr9 87982252 87982360 -36093812 + (TA)n Simple_repeat Simple_repeat 2 110 0 6 1256 5481 185 50 17 chr9 87982360 87983406 -36092766 - Lx7 LINE L1 -308 7388 6309 6 1256 3979 86 6 2 chr9 87984058 87984584 -36091588 + L1_Mus2 LINE L1 6039 6566 0 6 1256 365 288 83 35 chr9 87985342 87985486 -36090686 - Lx6 LINE L1 -27 7433 7283 6 1256 531 234 0 0 chr9 87985485 87985592 -36090580 + Lx6 LINE L1 6773 6879 -581 6 1256 249 314 143 12 chr9 87985833 87985994 -36090178 - MLT1K LTR MaLR -4 591 410 6 1256 1251 148 59 4 chr9 87986039 87986276 -36089896 + Lx3C LINE L1 6725 6974 -2 6 1256 27 0 0 0 chr9 87986276 87986303 -36089869 + AT_rich Low_complexity Low_complexity 1 27 0 6 1256 180 184 0 0 chr9 87987263 87987312 -36088860 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1256 189 107 0 0 chr9 87987317 87987345 -36088827 + (GGGAGA)n Simple_repeat Simple_repeat 4 31 0 6 1256 2039 100 61 6 chr9 87989566 87989878 -36086294 + ORR1A4 LTR MaLR 1 329 0 6 1256 459 0 0 0 chr9 87991469 87991520 -36084652 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1256 235 248 26 129 chr9 87991654 87991770 -36084402 - MER5B DNA MER1_type 0 178 75 6 1256 3488 57 28 2 chr9 87993076 87993501 -36082671 - RLTR10C LTR ERVK 0 436 1 6 1256 572 285 160 53 chr9 87993612 87993875 -36082297 + B4 SINE B4 2 292 0 6 1256 207 0 0 0 chr9 87993889 87993912 -36082260 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1256 446 255 10 0 chr9 87994586 87994688 -36081484 - PB1D10 SINE Alu -12 105 3 6 1256 683 299 131 51 chr9 87995469 87995882 -36080290 + MLT1J2 LTR MaLR 1 446 -2 6 1256 3132 276 105 81 chr9 87996232 87997263 -36078909 - Lx8 LINE L1 -318 7155 6063 6 1256 432 0 0 0 chr9 87997263 87997311 -36078861 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1256 345 47 0 0 chr9 87997311 87997353 -36078819 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1256 3132 276 98 74 chr9 87997353 87997902 -36078270 - Lx8 LINE L1 -1411 6062 5535 6 1256 602 299 131 9 chr9 87998701 87998930 -36077242 - B4A SINE B4 -19 273 17 6 1256 558 0 0 0 chr9 87998995 87999057 -36077115 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1256 269 273 84 97 chr9 87999379 87999533 -36076639 + MER2 DNA MER2_type 78 229 -116 6 1256 267 169 16 78 chr9 87999535 87999599 -36076573 + ORR1E LTR MaLR 7 66 -293 6 1256 232 260 26 13 chr9 87999742 87999820 -36076352 + CT-rich Low_complexity Low_complexity 5 83 0 6 1256 225 145 35 52 chr9 87999939 87999997 -36076175 + MTEb LTR MaLR 298 354 -25 6 1256 1953 229 53 17 chr9 88000424 88000668 -36075504 - L1_Mur3 LINE L1 -514 5366 5116 1 1256 1523 39 28 0 chr9 88000668 88000848 -36075324 - B2_Mm1t SINE B2 -7 186 2 2 1256 1953 229 53 17 chr9 88000848 88001186 -36074986 - L1_Mur3 LINE L1 -765 5115 4763 1 1256 1347 165 8 17 chr9 88001191 88001431 -36074741 - L1_Mur2 LINE L1 -392 5485 5248 3 1256 1145 94 33 0 chr9 88001435 88001615 -36074557 - B2_Mm2 SINE B2 -2 193 8 4 1256 653 117 0 0 chr9 88001615 88001709 -36074463 - L1_Mur2 LINE L1 -645 5232 5139 3 1256 2242 94 25 19 chr9 88002069 88002394 -36073778 - ORR1A4 LTR MaLR -2 327 1 5 1256 2478 62 3 44 chr9 88002449 88002787 -36073385 + L1_Mus2 LINE L1 6243 6566 0 6 1256 2797 287 65 15 chr9 88002845 88003729 -36072443 + Lx8 LINE L1 6096 7023 -450 7 1256 9155 40 2 15 chr9 88003720 88004876 -36071296 + L1_Mm LINE L1 1822 2962 -2921 8 1256 1479 37 10 10 chr9 88004876 88005069 -36071103 + L1Md_F3 LINE L1 6391 6583 -1 9 1256 873 314 69 54 chr9 88005069 88005522 -36070650 + Lx8 LINE L1 7011 7471 -2 7 1256 366 313 23 32 chr9 88005542 88005763 -36070409 + L1_Mur1 LINE L1 1562 1780 -4106 1 1256 309 337 62 83 chr9 88005933 88006026 -36070146 + MTEa LTR MaLR 77 175 -184 1 1256 876 20 0 0 chr9 88006026 88006128 -36070044 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1256 326 307 40 51 chr9 88006128 88006329 -36069843 + MTEa LTR MaLR 176 379 0 1 1256 22 35 0 0 chr9 88006551 88006580 -36069592 + AT_rich Low_complexity Low_complexity 1 29 0 1 1256 191 88 29 0 chr9 88007048 88007082 -36069090 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1256 896 206 20 40 chr9 88008058 88008260 -36067912 - B3A SINE B2 0 198 1 1 1256 215 333 26 0 chr9 88009523 88009601 -36066571 + MIRb SINE MIR 43 122 -146 1 1256 424 330 21 54 chr9 88011547 88011733 -36064439 + B4A SINE B4 113 292 0 1 1256 1472 103 5 0 chr9 88012592 88012787 -36063385 - Lx LINE L1 -475 6179 5984 1 1256 2624 128 31 42 chr9 88012787 88013243 -36062929 + Lx LINE L1 6204 6654 0 1 1256 1128 55 0 40 chr9 88014233 88014384 -36061788 + B1_Mus2 SINE Alu 1 145 -2 1 1256 692 299 0 0 chr9 88015436 88015610 -36060562 + MER58A DNA MER1_type 50 223 -1 2 1256 2877 187 84 52 chr9 88016296 88017068 -36059104 + RMER13B LTR ERVK 15 890 -68 2 1256 968 260 128 57 chr9 88017929 88018435 -36057737 - RMER4B LTR ERVK -27 558 17 2 1256 203 156 0 0 chr9 88019057 88019089 -36057083 + (CCA)n Simple_repeat Simple_repeat 1 32 0 2 1256 275 289 0 67 chr9 88019136 88019225 -36056947 + MER82 DNA MER2_type 516 598 -55 2 1256 428 367 75 3 chr9 88020602 88020922 -36055250 + HAL1 LINE L1 480 822 -1685 2 1256 288 265 181 29 chr9 88021004 88021109 -36055063 + ID_B1 SINE B4 103 223 -1 2 1256 245 207 17 0 chr9 88021109 88021167 -36055005 + A-rich Low_complexity Low_complexity 1 59 0 2 1256 627 299 90 44 chr9 88021221 88021812 -36054360 + HAL1 LINE L1 963 1580 -927 2 1256 1081 246 132 30 chr9 88021815 88022187 -36053985 - MTD LTR MaLR -2 417 8 2 1256 186 189 0 0 chr9 88022536 88022573 -36053599 + GA-rich Low_complexity Low_complexity 2 38 0 2 1256 297 259 36 8 chr9 88022573 88022688 -36053484 + L1MA9 LINE L1 6155 6273 -39 3 1256 1727 163 74 10 chr9 88023493 88023790 -36052382 + RMER1B Other Other 1 316 -750 3 1256 2087 156 91 34 chr9 88023790 88024048 -36052124 + RMER1B Other Other 655 918 -148 3 1256 630 39 0 0 chr9 88024048 88024125 -36052047 + (TGG)n Simple_repeat Simple_repeat 1 77 0 3 1256 2087 156 91 34 chr9 88024125 88024252 -36051920 + RMER1B Other Other 919 1061 -5 3 1256 38694 30 0 0 chr9 88024452 88030872 -36045300 - L1Md_T LINE L1 0 6585 68 3 1256 330 87 0 0 chr9 88031322 88031368 -36044804 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1256 1119 196 34 0 chr9 88031536 88031745 -36044427 + B3 SINE B2 1 216 0 3 1256 722 216 32 42 chr9 88031870 88032087 -36044085 - Lx8 LINE L1 -3 7470 7256 3 1256 324 222 0 0 chr9 88032281 88032344 -36043828 - Lx5 LINE L1 -619 6431 6369 3 1256 4201 166 77 22 chr9 88032342 88032854 -36043318 + Lx5 LINE L1 5346 5874 -6 3 1256 1003 145 77 16 chr9 88032854 88033036 -36043136 + B2_Mm2 SINE B2 2 194 -1 3 1256 4201 181 50 29 chr9 88033036 88033652 -36042520 + Lx5 LINE L1 5875 6736 -724 3 1256 204 40 0 0 chr9 88034095 88034120 -36042052 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 1256 450 53 0 0 chr9 88034464 88034521 -36041651 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1256 1245 33 0 0 chr9 88034521 88034671 -36041501 + (GGAA)n Simple_repeat Simple_repeat 4 153 0 4 1256 920 9 0 9 chr9 88034687 88034797 -36041375 + (GGAAA)n Simple_repeat Simple_repeat 2 110 0 4 1256 372 133 0 0 chr9 88035687 88035747 -36040425 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1256 486 257 0 0 chr9 88036146 88036251 -36039921 + 7SK RNA RNA 15 119 -212 4 1256 23 0 0 0 chr9 88036428 88036451 -36039721 + AT_rich Low_complexity Low_complexity 1 23 0 4 1256 616 301 0 29 chr9 88036505 88036676 -36039496 + B4A SINE B4 1 166 -126 4 1256 229 216 20 0 chr9 88036734 88036785 -36039387 + CT-rich Low_complexity Low_complexity 1 52 0 4 1256 588 107 0 0 chr9 88036821 88036924 -36039248 + (TC)n Simple_repeat Simple_repeat 2 104 0 4 1256 402 21 0 0 chr9 88036924 88036971 -36039201 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1256 1270 238 51 55 chr9 88037445 88037923 -36038249 + L1MA7 LINE L1 5808 6290 -1 5 1256 459 0 0 0 chr9 88038069 88038120 -36038052 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1256 843 179 184 0 chr9 88039300 88039490 -36036682 - URR1B DNA MER1_type 0 225 1 5 1256 762 54 11 0 chr9 88039494 88039586 -36036586 + L1Md_F2 LINE L1 5494 5586 -297 5 1256 8434 30 1 17 chr9 88039586 88040597 -36035575 + L1Md_F2 LINE L1 5587 6581 -1 5 1256 248 200 0 14 chr9 88041299 88041370 -36034802 + GA-rich Low_complexity Low_complexity 2 71 0 5 1256 33320 59 4 12 chr9 88041411 88046271 -36029901 - L1Md_A LINE L1 -435 5448 631 5 1256 446 324 14 0 chr9 88046687 88046832 -36029340 + B1F2 SINE Alu 3 149 0 5 1256 235 333 21 14 chr9 88047041 88047184 -36028988 + MLT2E LTR ERVL 470 613 -15 5 1256 260 238 108 62 chr9 88047192 88047322 -36028850 - LTR81A LTR ERV1? -1186 164 29 5 1256 1432 198 129 9 chr9 88047374 88047716 -36028456 + ORR1C2 LTR MaLR 2 384 0 6 1256 615 245 41 0 chr9 88047803 88047950 -36028222 + RSINE1 SINE B4 11 163 -2 6 1256 298 295 15 30 chr9 88047951 88048084 -36028088 + (CATA)n Simple_repeat Simple_repeat 2 132 0 6 1256 328 238 97 60 chr9 88049299 88049433 -36026739 + L1MA7 LINE L1 4593 4731 -1409 6 1256 231 237 0 48 chr9 88049447 88049509 -36026663 + tRNA-Ala-GCY_ tRNA tRNA 9 67 -8 6 1256 268 208 19 0 chr9 88049462 88049515 -36026657 + BC1_Mm scRNA scRNA 26 79 -73 6 1256 216 158 0 0 chr9 88049534 88049572 -36026600 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1256 1261 261 104 62 chr9 88049575 88050340 -36025832 + L1MA7 LINE L1 4742 5598 -573 6 1256 1599 182 40 3 chr9 88050340 88050637 -36025535 - RLTR27 LTR ERVK 0 309 2 6 1256 825 99 0 0 chr9 88050637 88050758 -36025414 + (GGAA)n Simple_repeat Simple_repeat 3 123 0 6 1256 1049 236 73 40 chr9 88050758 88051138 -36025034 + L1MA7 LINE L1 5599 6003 -288 6 1256 349 206 55 0 chr9 88051186 88051259 -36024913 + L1MA7 LINE L1 6109 6185 -127 6 1256 222 118 0 0 chr9 88051261 88051295 -36024877 + (CAGG)n Simple_repeat Simple_repeat 4 37 0 6 1256 229 284 93 47 chr9 88051503 88051610 -36024562 + MLT1B LTR MaLR 1 112 -393 7 1256 238 262 0 97 chr9 88051806 88051899 -36024273 + MLT1B LTR MaLR 276 359 -31 7 1256 378 194 139 0 chr9 88053123 88053231 -36022941 - Lx6 LINE L1 -26 7434 7312 7 1256 3733 207 37 96 chr9 88053466 88054586 -36021586 + RMER1A Other Other 1 931 -135 7 1256 677 22 34 0 chr9 88054586 88054675 -36021497 + (GTTTG)n Simple_repeat Simple_repeat 5 96 0 7 1256 251 54 27 0 chr9 88054683 88054720 -36021452 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 1256 3733 181 53 4 chr9 88054720 88054854 -36021318 + RMER1A Other Other 881 1019 -11 7 1256 1362 229 36 13 chr9 88054881 88055186 -36020986 - Lx6 LINE L1 -186 7274 6963 7 1256 4222 105 17 5 chr9 88055605 88056199 -36019973 + MT2B LTR ERVL 1 601 0 7 1256 1196 227 14 59 chr9 88057986 88058276 -36017896 + B4 SINE B4 2 278 -14 7 1256 418 292 22 7 chr9 88058305 88058453 -36017719 - L1MB1 LINE L1 -15 6153 6003 7 1256 262 0 53 0 chr9 88058655 88058693 -36017479 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 7 1256 229 365 0 0 chr9 88059197 88059260 -36016912 - Cheshire DNA MER1_type 0 2420 2358 7 1256 244 319 41 31 chr9 88059265 88059362 -36016810 - Cheshire DNA MER1_type -2149 271 174 7 1256 312 287 41 57 chr9 88059539 88059661 -36016511 + MLT1H1 LTR MaLR 16 135 -420 8 1256 1620 124 34 15 chr9 88059713 88059975 -36016197 + L1Md_F3 LINE L1 6306 6572 -12 8 1256 776 189 0 0 chr9 88060673 88060800 -36015372 - B1_Mus2 SINE Alu -10 137 11 8 1256 479 276 67 45 chr9 88060801 88060979 -36015193 - B3A SINE B2 0 216 35 8 1256 342 302 304 27 chr9 88061033 88061292 -36014880 + MER58B DNA MER1_type 6 336 -5 8 1256 887 164 257 0 chr9 88062440 88062611 -36013561 + B3 SINE B2 2 216 0 8 1256 916 215 9 61 chr9 88062634 88062862 -36013310 + B3 SINE B2 1 216 0 8 1256 3516 97 29 4 chr9 88063004 88063492 -36012680 + L1_Mus3 LINE L1 6135 6634 -4 8 1256 254 319 167 25 chr9 88063771 88064125 -36012047 - L1MEc LINE L1 -5709 691 288 8 1256 26 50 0 0 chr9 88064722 88064762 -36011410 + AT_rich Low_complexity Low_complexity 1 40 0 8 1256 314 371 31 6 chr9 88064904 88065064 -36011108 + MER5B DNA MER1_type 4 167 -11 9 1256 478 272 0 37 chr9 88065899 88066006 -36010166 + RSINE1 SINE B4 1 103 -62 9 1256 26 0 0 0 chr9 88066469 88066495 -36009677 + AT_rich Low_complexity Low_complexity 1 26 0 9 1256 180 154 0 0 chr9 88066946 88066972 -36009200 + L2b LINE L2 3331 3356 -19 9 1256 2060 191 35 17 chr9 88066973 88067377 -36008795 - MTD LTR MaLR -3 416 6 9 1256 369 317 0 10 chr9 88068648 88068750 -36007422 + ID_B1 SINE B4 3 103 -121 9 1256 4988 167 29 22 chr9 88068750 88069701 -36006471 + L1_Mur2 LINE L1 2286 3243 -2634 9 1256 360 258 22 0 chr9 88069702 88069791 -36006381 + ID_B1 SINE B4 131 221 -3 9 1256 2383 165 4 60 chr9 88069880 88070344 -36005828 - RMER19B LTR ERVK -464 438 1 9 1256 439 167 12 37 chr9 88070373 88070454 -36005718 + ID4_ SINE ID 3 81 -2 9 1256 210 37 0 0 chr9 88070759 88070786 -36005386 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 1256 972 163 0 0 chr9 88070897 88071044 -36005128 + B1_Mus2 SINE Alu 1 147 0 1 1256 1504 148 154 7 chr9 88071104 88071409 -36004763 - Lx9 LINE L1 -9 7635 7286 1 1256 898 277 10 46 chr9 88071410 88071591 -36004581 + L1MC LINE L1 4595 4769 -1377 1 1256 874 211 0 0 chr9 88071591 88071738 -36004434 + B1_Mur2 SINE Alu 2 148 -1 1 1256 898 277 10 46 chr9 88071738 88071862 -36004310 + L1MC LINE L1 4770 4889 -1257 1 1256 341 238 12 23 chr9 88071859 88071945 -36004227 + L1MC1 LINE L1 6248 6332 -1 1 1256 1179 125 118 20 chr9 88072221 88072425 -36003747 + URR1A DNA MER1_type 2 225 -1 1 1256 219 170 0 0 chr9 88072736 88072783 -36003389 + A-rich Low_complexity Low_complexity 1 47 0 1 1256 213 121 0 0 chr9 88073082 88073115 -36003057 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1256 333 0 0 0 chr9 88073649 88073686 -36002486 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1256 793 252 7 0 chr9 88073718 88073869 -36002303 - B4A SINE B4 -6 286 135 1 1256 1194 52 0 0 chr9 88074334 88074470 -36001702 + B1_Mm SINE Alu 3 138 -9 1 1256 531 0 0 0 chr9 88074470 88074529 -36001643 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1256 228 86 0 0 chr9 88074865 88074900 -36001272 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1256 541 307 61 43 chr9 88075374 88075766 -36000406 - MER113 DNA MER1_type -91 430 32 1 1256 250 101 0 80 chr9 88078159 88078234 -35997938 + T-rich Low_complexity Low_complexity 1 69 0 1 1256 207 0 0 0 chr9 88078235 88078258 -35997914 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 1 1256 216 0 0 0 chr9 88078269 88078293 -35997879 + (TTCTG)n Simple_repeat Simple_repeat 1 24 0 1 1256 256 341 54 31 chr9 88079048 88079178 -35996994 + ORR1E LTR MaLR 1 133 -226 1 1256 3409 60 19 0 chr9 88079659 88080073 -35996099 - L1_Mus3 LINE L1 0 6638 6217 1 19 382 291 134 91 chr9 88080158 88080487 -35995685 + ORR1E LTR MaLR 8 350 -9 1 1257 805 284 138 42 chr9 88080853 88081510 -35994662 + L1ME1 LINE L1 5190 5931 -248 1 1257 1044 117 0 0 chr9 88081662 88081807 -35994365 + B2_Mm2 SINE B2 3 147 -48 1 1257 351 88 287 44 chr9 88081826 88081939 -35994233 + B2_Mm2 SINE B2 47 190 -5 1 1257 3193 145 10 18 chr9 88082221 88082714 -35993458 + Lx4A LINE L1 6568 7056 -2 1 1257 8635 25 0 3 chr9 88083650 88084704 -35991468 - L1Md_T LINE L1 0 6582 5533 1 1257 4964 190 95 9 chr9 88085012 88086004 -35990168 - Lx5 LINE L1 -5 7045 5969 1 1257 369 273 139 41 chr9 88086307 88086479 -35989693 + MER5A DNA MER1_type 1 189 0 1 1257 374 0 22 0 chr9 88087147 88087193 -35988979 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1257 32 26 0 0 chr9 88087603 88087642 -35988530 + AT_rich Low_complexity Low_complexity 1 39 0 1 1257 703 7 97 0 chr9 88087709 88087853 -35988319 + (TC)n Simple_repeat Simple_repeat 1 158 0 1 1257 794 193 41 0 chr9 88087956 88088101 -35988071 - Lx5 LINE L1 -297 6753 6603 1 1257 679 259 42 26 chr9 88088329 88088372 -35987800 - B3A SINE B2 -4 194 148 1 1257 252 0 0 0 chr9 88088372 88088400 -35987772 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1257 679 259 42 26 chr9 88088400 88088546 -35987626 - B3A SINE B2 -51 147 2 1 1257 273 210 0 0 chr9 88088743 88088805 -35987367 + T-rich Low_complexity Low_complexity 1 62 0 1 1257 908 226 108 0 chr9 88088930 88089116 -35987056 + B3 SINE B2 4 209 -7 1 1257 4700 112 6 8 chr9 88089140 88089780 -35986392 + Lx2 LINE L1 6358 6996 -1 1 1257 672 191 223 0 chr9 88089849 88090006 -35986166 + B3 SINE B2 24 215 -1 1 1257 617 294 66 113 chr9 88090331 88090481 -35985691 - L1MB5 LINE L1 -9 6165 6001 1 1257 315 0 0 0 chr9 88090481 88090516 -35985656 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1257 617 294 66 113 chr9 88090516 88090618 -35985554 - L1MB5 LINE L1 -174 6000 5895 1 1257 967 236 28 14 chr9 88090618 88090829 -35985343 + B3 SINE B2 3 216 0 1 1257 617 294 66 113 chr9 88090829 88091062 -35985110 - L1MB5 LINE L1 -280 5894 5702 1 1257 306 0 0 0 chr9 88091126 88091160 -35985012 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1257 25 65 0 0 chr9 88092541 88092587 -35983585 + AT_rich Low_complexity Low_complexity 1 46 0 1 1257 1215 62 7 0 chr9 88092849 88092994 -35983178 - B1_Mus2 SINE Alu 0 147 2 1 1257 768 297 40 71 chr9 88093028 88093325 -35982847 + B4A SINE B4 5 292 0 1 1257 502 178 156 10 chr9 88093452 88093573 -35982599 - B1_Mur2 SINE Alu -1 148 2 1 1257 316 307 66 22 chr9 88093573 88093756 -35982416 - L1MB2 LINE L1 -32 6139 5949 1 1257 772 306 130 5 chr9 88094220 88094611 -35981561 + Lx9 LINE L1 7178 7617 -27 1 1257 1879 175 70 20 chr9 88094730 88095086 -35981086 - ORR1D1 LTR MaLR 0 374 1 1 1257 1464 71 11 5 chr9 88096044 88096228 -35979944 + B2_Mm2 SINE B2 1 185 -10 1 1257 315 309 26 26 chr9 88096341 88096454 -35979718 + L2a LINE L2 3312 3424 -2 1 1257 409 364 0 0 chr9 88098498 88098619 -35977553 - ID_B1 SINE B4 -26 198 78 1 1257 276 237 84 21 chr9 88098743 88098838 -35977334 - L1MC5 LINE L1 -48 7913 7813 1 1257 1112 230 14 14 chr9 88099578 88099790 -35976382 + B3 SINE B2 1 212 -4 1 1257 1761 183 99 14 chr9 88101429 88101783 -35974389 - ORR1C2 LTR MaLR 0 384 1 1 1257 300 207 0 33 chr9 88101891 88101951 -35974221 - RSINE1 SINE B4 -93 72 15 1 1257 283 327 56 28 chr9 88101972 88102079 -35974093 - PB1D9 SINE Alu -7 113 4 1 1257 281 278 0 0 chr9 88103786 88103858 -35972314 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1257 459 0 0 0 chr9 88103858 88103909 -35972263 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1257 315 0 0 0 chr9 88103909 88103943 -35972229 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1257 333 202 262 0 chr9 88103944 88104028 -35972144 - RSINE1 SINE B4 -58 107 2 1 1257 444 19 0 0 chr9 88104073 88104126 -35972046 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1257 294 234 31 0 chr9 88104127 88104191 -35971981 - RSINE1 SINE B4 -40 125 60 1 1257 395 272 117 7 chr9 88104422 88104559 -35971613 + RSINE1 SINE B4 2 153 -12 1 1257 495 87 0 0 chr9 88104564 88104633 -35971539 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1 1257 343 352 19 0 chr9 88105023 88105128 -35971044 + RSINE1 SINE B4 53 159 -6 1 1257 191 62 0 59 chr9 88105145 88105179 -35970993 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 1 1257 561 254 55 33 chr9 88105195 88105471 -35970701 + MTD LTR MaLR 109 419 0 1 1257 396 279 200 29 chr9 88105502 88105642 -35970530 + RSINE1 SINE B4 1 164 -1 1 1257 2011 295 44 102 chr9 88105800 88106226 -35969946 + L1M2 LINE L1 2350 2739 -3404 1 1257 1293 231 92 39 chr9 88106226 88106586 -35969586 + MTEb LTR MaLR 1 379 0 1 1257 2011 295 44 102 chr9 88106586 88106788 -35969384 + L1M2 LINE L1 2740 2918 -3225 1 1257 1028 234 5 19 chr9 88106788 88107001 -35969171 + B3 SINE B2 5 214 -2 1 1257 2011 295 44 102 chr9 88107001 88107547 -35968625 + L1M2 LINE L1 2919 3438 -2705 1 1257 531 228 93 22 chr9 88107547 88107686 -35968486 + B1_Mur2 SINE Alu 1 149 0 1 1257 2011 295 44 102 chr9 88107686 88108263 -35967909 + L1M2 LINE L1 3439 4001 -2142 1 1257 2285 185 94 17 chr9 88108303 88108782 -35967390 - RMER15 LTR ERVL 0 575 60 1 1257 1221 68 7 0 chr9 88108828 88108974 -35967198 - B1_Mus1 SINE Alu 0 148 2 1 1257 669 230 16 0 chr9 88110748 88110874 -35965298 + ID_B1 SINE B4 87 214 -10 1 1257 480 35 0 0 chr9 88110876 88110934 -35965238 + (TAA)n Simple_repeat Simple_repeat 2 59 0 1 1257 372 329 101 76 chr9 88110937 88111174 -35964998 - MLT1G LTR MaLR -73 518 276 1 1257 30 45 0 0 chr9 88111191 88111235 -35964937 + AT_rich Low_complexity Low_complexity 1 44 0 1 1257 483 294 17 81 chr9 88111235 88111409 -35964763 - RSINE1 SINE B4 0 165 3 1 1257 536 232 70 97 chr9 88112361 88112525 -35963647 + B3A SINE B2 2 161 -37 1 1257 189 0 0 0 chr9 88112525 88112546 -35963626 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1257 308 232 70 97 chr9 88112546 88112567 -35963605 + B2_Mm2 SINE B2 158 182 -13 1 1257 761 166 0 121 chr9 88112584 88112749 -35963423 - B1_Mus1 SINE Alu -2 146 2 1 1257 396 0 0 0 chr9 88112785 88112829 -35963343 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1257 222 37 0 0 chr9 88113128 88113155 -35963017 + (TGG)n Simple_repeat Simple_repeat 2 28 0 1 1257 233 380 9 9 chr9 88113247 88113361 -35962811 + Tigger9b DNA MER2_type 507 620 -4 1 1257 712 239 39 11 chr9 88113527 88113705 -35962467 + B3A SINE B2 11 193 -5 1 1257 2352 102 6 3 chr9 88113854 88114179 -35961993 - ORR1A2 LTR MaLR 0 327 2 1 1257 743 162 7 0 chr9 88118492 88118634 -35957538 + (TA)n Simple_repeat Simple_repeat 2 144 0 1 1257 316 350 13 20 chr9 88118976 88119168 -35957004 - MIR SINE MIR -10 258 69 1 1257 1137 97 0 5 chr9 88119176 88119608 -35956564 + (TG)n Simple_repeat Simple_repeat 1 430 0 1 1257 2153 102 94 12 chr9 88120083 88120422 -35955750 - ORR1B2 LTR MaLR 0 367 1 1 1257 441 0 0 0 chr9 88120706 88120755 -35955417 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1257 747 264 58 12 chr9 88120822 88121079 -35955093 - L1MB4 LINE L1 -48 6132 5864 1 1257 243 240 81 30 chr9 88121089 88121188 -35954984 + MER96B DNA hAT 109 212 -205 1 1257 382 274 45 19 chr9 88121666 88121844 -35954328 - B3 SINE B2 0 195 15 1 1257 322 296 34 17 chr9 88122058 88122175 -35953997 - RMER15 LTR ERVL -158 417 299 1 1257 313 263 67 17 chr9 88122223 88122343 -35953829 - RMER15 LTR ERVL -449 126 1 1 1257 420 272 71 8 chr9 88123498 88123624 -35952548 + RSINE1 SINE B4 3 136 -29 1 1257 1133 62 21 0 chr9 88123647 88123791 -35952381 + B1_Mus2 SINE Alu 1 147 0 1 1257 39 60 0 0 chr9 88123791 88123858 -35952314 + AT_rich Low_complexity Low_complexity 1 67 0 1 1257 940 270 75 80 chr9 88124139 88124553 -35951619 - MLT1B LTR MaLR -5 385 4 1 1257 411 21 0 0 chr9 88124604 88124652 -35951520 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1257 301 273 0 83 chr9 88124810 88124894 -35951278 + B1F1 SINE Alu 9 85 -32 2 1257 240 137 0 0 chr9 88125223 88125274 -35950898 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1257 186 43 0 0 chr9 88125278 88125301 -35950871 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1257 731 136 374 0 chr9 88125318 88125465 -35950707 - B3 SINE B2 -14 202 1 2 1257 294 50 0 0 chr9 88126501 88126541 -35949631 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 1257 247 235 165 0 chr9 88127269 88127354 -35948818 - Lx9 LINE L1 -15 7629 7531 2 1257 368 229 80 44 chr9 88127344 88127355 -35948817 - Lx5 LINE L1 -4 7046 7037 2 1257 393 39 0 0 chr9 88127355 88127406 -35948766 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 2 1257 368 229 80 44 chr9 88127406 88127531 -35948641 - Lx5 LINE L1 -14 7036 6905 2 1257 398 238 12 0 chr9 88127916 88128000 -35948172 - Lx9 LINE L1 -782 6862 6778 2 1257 711 0 0 0 chr9 88128136 88128215 -35947957 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 1257 22 0 0 0 chr9 88128884 88128906 -35947266 + AT_rich Low_complexity Low_complexity 1 22 0 2 1257 556 146 173 14 chr9 88128906 88129004 -35947168 - Lx4A LINE L1 -9 7049 6940 2 1257 378 0 0 0 chr9 88129004 88129046 -35947126 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1257 556 146 173 14 chr9 88129046 88129086 -35947086 - Lx4A LINE L1 -119 6939 6890 2 1257 213 245 0 0 chr9 88129284 88129333 -35946839 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1257 453 261 22 36 chr9 88129333 88129472 -35946700 + L1M3 LINE L1 5656 5792 -388 2 1257 2379 114 0 3 chr9 88129472 88129797 -35946375 - ORR1A3 LTR MaLR -2 324 1 2 1257 3409 102 22 9 chr9 88129797 88130342 -35945830 - ORR1A3-int LTR MaLR 0 1963 1412 2 1257 8452 28 0 0 chr9 88130363 88131327 -35944845 - L1Md_T LINE L1 0 6582 5619 2 1257 594 264 36 83 chr9 88131475 88131727 -35944445 + L1MA4 LINE L1 5450 5689 -611 2 1257 694 176 7 78 chr9 88131727 88131869 -35944303 + B1_Mur1 SINE Alu 7 138 -11 2 1257 572 284 61 9 chr9 88131893 88132124 -35944048 + L1MA4 LINE L1 5686 5928 -372 2 1257 697 194 28 0 chr9 88132159 88132303 -35943869 + B1_Mur1 SINE Alu 2 149 0 2 1257 258 56 0 0 chr9 88132522 88132558 -35943614 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1257 342 113 0 0 chr9 88132587 88132640 -35943532 - B3 SINE B2 -163 53 1 2 1257 217 330 27 18 chr9 88132688 88132799 -35943373 - MIRb SINE MIR -120 148 37 2 1257 21 0 0 0 chr9 88133555 88133576 -35942596 + AT_rich Low_complexity Low_complexity 1 21 0 2 1257 5663 155 52 15 chr9 88133577 88135471 -35940701 + Lx5 LINE L1 5070 7058 0 2 1257 481 258 136 75 chr9 88135723 88135937 -35940235 + Lx8 LINE L1 7090 7316 -157 2 1257 246 103 0 79 chr9 88135941 88136004 -35940168 + GA-rich Low_complexity Low_complexity 4 61 0 2 1257 281 284 26 44 chr9 88136013 88136127 -35940045 + RSINE1 SINE B4 23 134 -31 2 1257 297 224 68 17 chr9 88136253 88136371 -35939801 + Lx8 LINE L1 7349 7472 -1 2 1257 486 271 29 0 chr9 88136391 88136531 -35939641 + RSINE1 SINE B4 1 144 -21 2 1257 28 0 0 0 chr9 88136937 88136965 -35939207 + AT_rich Low_complexity Low_complexity 1 28 0 2 1257 293 208 0 13 chr9 88137011 88137089 -35939083 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1257 25 0 0 0 chr9 88137169 88137194 -35938978 + AT_rich Low_complexity Low_complexity 1 25 0 2 1257 970 317 95 30 chr9 88137574 88138081 -35938091 + MER82 DNA MER2_type 38 577 -76 2 1257 1955 175 123 11 chr9 88138985 88139425 -35936747 - RMER20A LTR ERVK -27 489 1 2 1257 375 23 0 0 chr9 88139586 88139630 -35936542 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1257 261 57 0 0 chr9 88139700 88139735 -35936437 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1257 1309 120 16 0 chr9 88140726 88140917 -35935255 - B2_Mm2 SINE B2 -1 194 1 2 1257 221 28 83 0 chr9 88140959 88140995 -35935177 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1257 234 250 37 24 chr9 88141374 88141456 -35934716 - MIR3 SINE MIR 0 208 126 2 1257 1056 65 11 51 chr9 88142694 88142871 -35933301 - L1_Mus3 LINE L1 -1 6637 6468 2 1257 23087 120 12 12 chr9 88142871 88146467 -35929705 - L1_Mm LINE L1 -427 5456 1861 2 1257 680 274 48 9 chr9 88146529 88146757 -35929415 - Lx7 LINE L1 -1865 5831 5595 2 1257 1215 62 0 0 chr9 88146834 88146980 -35929192 + B1_Mm SINE Alu 2 147 0 2 1257 242 123 17 34 chr9 88147503 88147562 -35928610 + T-rich Low_complexity Low_complexity 2 59 0 2 1257 1005 118 0 0 chr9 88147660 88147838 -35928334 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1257 1062 111 0 0 chr9 88147853 88148223 -35927949 + (TG)n Simple_repeat Simple_repeat 1 370 0 2 1257 566 255 40 27 chr9 88149326 88149475 -35926697 + RSINE1 SINE B4 3 153 -12 2 1257 372 171 80 0 chr9 88150346 88150434 -35925738 + B1_Mur4 SINE Alu 51 145 -5 2 1257 28 48 0 0 chr9 88150434 88150476 -35925696 + AT_rich Low_complexity Low_complexity 1 42 0 2 1257 228 297 124 50 chr9 88151063 88151265 -35924907 + B4A SINE B4 16 232 -60 2 1257 232 271 0 0 chr9 88151256 88151304 -35924868 + RSINE1 SINE B4 82 129 -36 2 1257 615 27 0 0 chr9 88151324 88151397 -35924775 + (GGGA)n Simple_repeat Simple_repeat 2 74 0 2 1257 230 159 94 16 chr9 88151784 88151848 -35924324 - L1M2 LINE L1 -3330 2813 2745 2 1257 30 59 0 0 chr9 88151949 88152000 -35924172 + AT_rich Low_complexity Low_complexity 1 51 0 2 1257 6641 75 29 6 chr9 88153094 88154746 -35921426 - L1VL2 LINE L1 -1789 1826 137 2 1257 564 248 27 41 chr9 88154746 88154893 -35921279 + B1_Mur1 SINE Alu 3 147 -2 2 1257 29 0 0 0 chr9 88154944 88154973 -35921199 + AT_rich Low_complexity Low_complexity 1 29 0 2 1257 2008 183 260 10 chr9 88155603 88156164 -35920008 - MTC-int LTR MaLR -410 848 146 2 1257 23 0 0 0 chr9 88156456 88156479 -35919693 + AT_rich Low_complexity Low_complexity 1 23 0 2 1257 331 350 59 63 chr9 88156841 88157112 -35919060 + ORR1E LTR MaLR 88 357 -2 2 1257 319 295 102 39 chr9 88158020 88158147 -35918025 - ID_B1 SINE B4 -2 222 88 2 1257 1475 75 0 5 chr9 88158192 88158381 -35917791 - B2_Mm2 SINE B2 -6 189 2 2 1257 183 156 0 0 chr9 88158392 88158424 -35917748 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2 1257 8034 60 0 0 chr9 88158615 88159819 -35916353 - L1_Mus2 LINE L1 0 6566 5363 2 1257 6017 77 1 9 chr9 88159817 88160628 -35915544 + L1_Mus2 LINE L1 4560 5364 -519 2 1257 1078 86 74 0 chr9 88161290 88161452 -35914720 + B2_Mm2 SINE B2 1 174 -21 2 1257 331 102 220 0 chr9 88161481 88161540 -35914632 + B2_Mm2 SINE B2 83 154 -41 2 1257 450 0 0 0 chr9 88161542 88161592 -35914580 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 2 1257 272 250 69 69 chr9 88162453 88162569 -35913603 - LTR16C LTR ERVL -3 486 371 2 1257 390 329 65 19 chr9 88162710 88162771 -35913401 - RMER15 LTR ERVL -5 570 502 2 1257 243 0 0 0 chr9 88162771 88162798 -35913374 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1257 390 329 65 19 chr9 88162798 88162950 -35913222 - RMER15 LTR ERVL -74 501 347 2 1257 288 322 58 0 chr9 88163446 88163533 -35912639 + B1F1 SINE Alu 6 97 -52 2 1257 687 84 0 0 chr9 88164498 88164593 -35911579 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 2 1257 550 27 0 13 chr9 88166966 88167041 -35909131 + L1_Mus2 LINE L1 6493 6566 0 2 1257 1088 109 0 0 chr9 88167215 88167362 -35908810 + B1_Mus1 SINE Alu 2 148 0 2 1257 1131 93 0 0 chr9 88167886 88168048 -35908124 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 2 1257 22 56 0 0 chr9 88168584 88168620 -35907552 + AT_rich Low_complexity Low_complexity 1 36 0 2 1257 292 274 75 25 chr9 88168639 88168658 -35907514 - B3A SINE B2 -16 182 164 2 1257 342 67 0 0 chr9 88168658 88168703 -35907469 + (TGG)n Simple_repeat Simple_repeat 3 47 0 2 1257 292 274 75 25 chr9 88168703 88168803 -35907369 - B3A SINE B2 -35 163 57 2 1257 432 0 0 0 chr9 88169214 88169262 -35906910 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 1257 711 232 60 38 chr9 88170129 88170313 -35905859 + B3A SINE B2 1 188 -10 2 1257 926 226 33 33 chr9 88170326 88170513 -35905659 + B3 SINE B2 1 191 -25 2 1257 1856 191 19 11 chr9 88170513 88170883 -35905289 + ORR1D1 LTR MaLR 2 374 0 2 1257 926 226 33 33 chr9 88170883 88170906 -35905266 + B3 SINE B2 192 211 -5 2 1257 216 0 0 0 chr9 88171384 88171408 -35904764 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1257 849 144 0 0 chr9 88171408 88171568 -35904604 + (GA)n Simple_repeat Simple_repeat 2 161 0 2 1257 333 197 0 0 chr9 88171689 88171760 -35904412 + GA-rich Low_complexity Low_complexity 3 73 0 2 1257 298 207 223 9 chr9 88172000 88172112 -35904060 - RMER15 LTR ERVL -115 460 325 2 1257 447 231 76 8 chr9 88172402 88172533 -35903639 + ID_B1 SINE B4 82 221 -3 2 1257 829 189 13 13 chr9 88173092 88173242 -35902930 + B1_Mur4 SINE Alu 1 150 0 2 1257 264 22 21 43 chr9 88173701 88173748 -35902424 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 2 1257 470 236 9 18 chr9 88174110 88174222 -35901950 + RSINE1 SINE B4 17 127 -38 2 1257 1005 213 64 0 chr9 88177131 88177295 -35898877 + B3 SINE B2 2 178 -38 2 1257 287 113 19 0 chr9 88177295 88177348 -35898824 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2 1257 1005 213 64 0 chr9 88177348 88177385 -35898787 + B3 SINE B2 179 215 -1 2 1257 279 28 0 0 chr9 88177497 88177533 -35898639 - U2 snRNA snRNA -152 36 1 2 1257 288 0 0 0 chr9 88177872 88177904 -35898268 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1257 1157 64 0 0 chr9 88177919 88178059 -35898113 - B1_Mus1 SINE Alu -8 140 1 2 1257 302 239 273 12 chr9 88178296 88178457 -35897715 + B4A SINE B4 39 241 -51 2 1257 246 273 101 11 chr9 88178441 88178530 -35897642 + B1F1 SINE Alu 53 149 0 2 1257 465 281 30 48 chr9 88178772 88178940 -35897232 + RSINE1 SINE B4 1 165 0 2 1257 219 239 0 0 chr9 88178940 88178986 -35897186 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1257 654 249 93 5 chr9 88179251 88179445 -35896727 + ID_B1 SINE B4 1 211 -13 2 1257 324 283 0 11 chr9 88179597 88179690 -35896482 - L1MD LINE L1 -2225 5770 5679 2 1257 258 82 450 12 chr9 88179816 88179916 -35896256 - B2_Mm2 SINE B2 -4 191 48 3 1257 1206 114 11 6 chr9 88179968 88180145 -35896027 - B2_Mm1t SINE B2 -14 179 2 3 1257 466 171 0 0 chr9 88180431 88180507 -35895665 - B1_Mur2 SINE Alu -49 100 25 3 1257 238 291 58 85 chr9 88180591 88180850 -35895322 - L1MD2 LINE L1 -3693 2851 2600 3 1257 866 306 30 15 chr9 88182900 88183162 -35893010 - B4 SINE B4 0 292 27 3 1257 442 299 154 11 chr9 88183413 88183948 -35892224 - L1MD2 LINE L1 -5023 1617 1028 3 1257 962 220 5 20 chr9 88183948 88184152 -35892020 - B3 SINE B2 -15 201 1 3 1257 442 336 37 85 chr9 88184152 88184351 -35891821 - L1MD2 LINE L1 -5520 1027 828 3 1257 444 248 24 71 chr9 88184351 88184477 -35891695 - PB1D7 SINE Alu 0 120 1 3 1257 442 336 37 85 chr9 88184477 88184640 -35891532 - L1MD2 LINE L1 -5720 827 680 3 1257 548 236 24 24 chr9 88185257 88185383 -35890789 + RSINE1 SINE B4 2 127 -38 3 1257 574 247 191 82 chr9 88185416 88185459 -35890713 - B3 SINE B2 0 216 138 3 1257 486 33 0 0 chr9 88185459 88185519 -35890653 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1257 574 247 191 82 chr9 88185519 88185628 -35890544 - B3 SINE B2 -79 137 42 3 1257 1117 95 0 0 chr9 88185628 88185775 -35890397 - B1_Mus1 SINE Alu 0 148 2 3 1257 574 247 191 82 chr9 88185775 88185815 -35890357 - B3 SINE B2 -175 41 2 3 1257 674 63 21 0 chr9 88185981 88186076 -35890096 + (GAAA)n Simple_repeat Simple_repeat 3 99 0 3 1257 2666 184 65 2 chr9 88186446 88186926 -35889246 + RLTR18B LTR ERVK 1 510 -2 3 1257 349 241 33 54 chr9 88187404 88187496 -35888676 + PB1D10 SINE Alu 1 90 -27 3 1257 212 192 57 19 chr9 88187506 88187559 -35888613 + GA-rich Low_complexity Low_complexity 5 59 0 3 1257 342 0 0 0 chr9 88188548 88188586 -35887586 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 3 1257 3124 75 0 5 chr9 88189226 88189628 -35886544 + MTB LTR MaLR 1 400 0 3 1257 257 305 90 86 chr9 88190652 88190885 -35885287 + MamRep38 DNA hAT 6 239 -56 3 1257 194 156 22 0 chr9 88191072 88191117 -35885055 + CT-rich Low_complexity Low_complexity 2 47 0 3 1257 3019 69 2 13 chr9 88192280 88192678 -35883494 - MTA_Mm LTR MaLR 0 396 3 3 1257 305 274 0 0 chr9 88192689 88192773 -35883399 - MLT1A1 LTR MaLR -7 401 318 3 1257 255 262 97 61 chr9 88192874 88192988 -35883184 + PB1 SINE Alu 10 127 0 3 1257 474 237 159 6 chr9 88192991 88193161 -35883011 + L1MB7 LINE L1 5192 5387 -759 3 1257 416 261 139 48 chr9 88193233 88193398 -35882774 + L1MB7 LINE L1 5568 5747 -431 3 1257 345 272 73 56 chr9 88193394 88193573 -35882599 + L1MB7 LINE L1 6001 6182 -2 3 1257 3181 54 0 3 chr9 88194308 88194695 -35881477 + L1Md_F2 LINE L1 5201 5586 -297 3 1257 8105 51 9 0 chr9 88194695 88195682 -35880490 + L1Md_F2 LINE L1 5587 6582 0 3 1257 3136 105 26 29 chr9 88195741 88196232 -35879940 - Lx LINE L1 -6 6648 6159 3 1257 588 140 0 20 chr9 88196232 88196334 -35879838 + L1_Mur2 LINE L1 5269 5368 -509 3 1257 33568 97 7 15 chr9 88196358 88201999 -35874173 + Lx LINE L1 199 6223 -431 3 1257 325 243 40 0 chr9 88202286 88202360 -35873812 + PB1D10 SINE Alu 1 77 -40 3 1257 596 281 7 0 chr9 88202408 88202554 -35873618 + B3A SINE B2 4 150 -48 3 1257 482 108 12 0 chr9 88202555 88202638 -35873534 + (CA)n Simple_repeat Simple_repeat 1 84 0 3 1257 24 0 0 0 chr9 88202685 88202709 -35873463 + AT_rich Low_complexity Low_complexity 1 24 0 3 1257 582 216 56 8 chr9 88203038 88203164 -35873008 + ID_B1 SINE B4 93 224 0 3 1257 249 281 12 12 chr9 88203473 88203556 -35872616 + GA-rich Low_complexity Low_complexity 2 84 0 3 1257 743 226 164 15 chr9 88204292 88204612 -35871560 - L1MC LINE L1 -978 5366 4989 3 1257 604 296 63 126 chr9 88204614 88205043 -35871129 - RMER20B LTR ERVK -27 600 199 3 1257 228 316 97 32 chr9 88205191 88205345 -35870827 - L1MC LINE L1 -1138 5008 4845 3 1257 264 242 200 0 chr9 88205348 88205443 -35870729 - Tigger5 DNA MER2_type -1 2405 2292 3 1257 428 330 67 11 chr9 88205486 88205664 -35870508 - Tigger5 DNA MER2_type -2217 189 2 3 1257 315 211 43 22 chr9 88205738 88205830 -35870342 - MLT1A1 LTR MaLR -2 406 313 3 1257 1966 57 0 0 chr9 88205839 88206101 -35870071 + MusHAL1 LINE L1 1824 2085 -627 3 1257 24 85 0 0 chr9 88206638 88206697 -35869475 + AT_rich Low_complexity Low_complexity 1 59 0 3 1257 897 81 0 0 chr9 88206936 88207059 -35869113 + (GA)n Simple_repeat Simple_repeat 1 123 0 3 1257 717 12 0 0 chr9 88207059 88207140 -35869032 + (GGAA)n Simple_repeat Simple_repeat 1 82 0 3 1257 389 169 11 3 chr9 88207152 88207227 -35868945 - ORR1B2 LTR MaLR 0 374 297 3 1257 373 264 28 21 chr9 88207231 88207374 -35868798 - L1MC LINE L1 -1751 4395 4252 3 1257 2356 69 0 0 chr9 88207739 88208057 -35868115 + ORR1A2 LTR MaLR 2 319 -8 3 1257 1099 272 91 22 chr9 88208280 88208644 -35867528 - MLT1A1 LTR MaLR 0 408 20 3 1257 4429 62 7 2 chr9 88209199 88209761 -35866411 - L1Md_F2 LINE L1 -2 6580 6016 3 1257 5938 66 0 0 chr9 88209763 88210502 -35865670 + L1_Mm LINE L1 4383 5121 -762 3 1257 2309 151 51 78 chr9 88210502 88211028 -35865144 - RLTR12B LTR ERVK -16 512 1 3 1257 264 211 26 13 chr9 88211028 88211105 -35865067 + Charlie4a DNA MER1_type 402 479 -29 3 1258 333 0 0 0 chr9 88211489 88211526 -35864646 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1258 180 0 0 0 chr9 88211578 88211598 -35864574 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1258 1219 41 7 0 chr9 88211610 88211755 -35864417 - B1_Mm SINE Alu 0 147 2 3 1258 252 139 0 0 chr9 88211813 88211856 -35864316 - MER63D DNA AcHobo -505 556 514 3 1258 359 281 79 0 chr9 88211979 88212093 -35864079 + ID_B1 SINE B4 100 222 -2 3 1258 314 45 0 22 chr9 88212444 88212489 -35863683 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1258 248 261 31 61 chr9 88212863 88212959 -35863213 + B4A SINE B4 3 95 -197 3 1258 1094 110 0 0 chr9 88212959 88213122 -35863050 + B2_Mm2 SINE B2 1 163 -32 3 1258 342 0 0 0 chr9 88213123 88213161 -35863011 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 1258 636 227 30 30 chr9 88213168 88213336 -35862836 + B4A SINE B4 90 257 -35 3 1258 430 284 39 33 chr9 88213363 88213545 -35862627 + L1MD3 LINE L1 7479 7661 -334 3 1258 347 288 59 18 chr9 88213699 88213869 -35862303 + L1MC4a LINE L1 7545 7721 -161 3 1258 312 207 134 0 chr9 88213896 88213978 -35862194 + B4A SINE B4 6 98 -194 3 1258 428 100 12 0 chr9 88214003 88214083 -35862089 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1258 1017 226 167 3 chr9 88214176 88214518 -35861654 - RMER10B LTR ERVL 0 398 1 3 1258 280 309 102 27 chr9 88214685 88214871 -35861301 + L1M4 LINE L1 4885 5090 -1056 3 1258 300 65 0 115 chr9 88215510 88215525 -35860647 + L1M3 LINE L1 5063 5072 -1068 3 1258 845 244 30 10 chr9 88215525 88215728 -35860444 - B3 SINE B2 -9 207 1 3 1258 300 98 0 101 chr9 88215728 88215791 -35860381 + L1M3 LINE L1 5073 5136 -1010 3 1258 274 288 6 22 chr9 88215852 88215946 -35860226 + ID4_ SINE ID 12 103 -49 3 1258 2899 28 6 169 chr9 88215957 88216423 -35859749 - RLTR10 LTR ERVK 0 390 1 3 1258 17176 22 7 4 chr9 88216425 88218362 -35857810 - RLTR10-int LTR ERVK -3 1984 41 3 1258 2983 18 9 0 chr9 88218372 88218706 -35857466 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1258 2411 174 17 34 chr9 88218840 88219316 -35856856 + Lx3C LINE L1 6507 6974 -2 3 1258 680 327 23 0 chr9 88219909 88220123 -35856049 + ID_B1 SINE B4 6 224 0 3 1258 427 315 66 20 chr9 88220170 88220322 -35855850 + RSINE1 SINE B4 4 162 -3 3 1258 860 161 0 0 chr9 88220377 88220514 -35855658 - B1_Mus1 SINE Alu -6 142 6 3 1258 288 280 39 16 chr9 88220605 88220732 -35855440 + L1MB3 LINE L1 5391 5520 -648 3 1258 451 277 191 20 chr9 88220893 88221092 -35855080 + L1MB3 LINE L1 5809 6041 -142 3 1258 198 103 0 0 chr9 88221096 88221125 -35855047 + (TTG)n Simple_repeat Simple_repeat 1 29 0 3 1258 252 217 14 28 chr9 88221218 88221289 -35854883 + L1MB3 LINE L1 6005 6074 -109 3 1258 337 198 161 0 chr9 88221383 88221464 -35854708 - PB1D10 SINE Alu -11 106 13 3 1258 360 0 0 0 chr9 88221469 88221509 -35854663 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1258 459 48 0 0 chr9 88221748 88221810 -35854362 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1258 189 331 53 45 chr9 88223320 88223453 -35852719 + MIRb SINE MIR 76 209 -59 3 1258 534 253 157 0 chr9 88223610 88223776 -35852396 + ID_B1 SINE B4 1 192 -32 3 1258 540 0 0 0 chr9 88223779 88223839 -35852333 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1258 342 0 0 0 chr9 88225394 88225432 -35850740 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1258 472 226 47 0 chr9 88225726 88225832 -35850340 - ID_B1 SINE B4 0 224 114 3 1258 1685 183 82 28 chr9 88225845 88226199 -35849973 - ORR1D1 LTR MaLR 0 374 2 3 1258 621 267 108 0 chr9 88226547 88226723 -35849449 - B3A SINE B2 -2 196 2 3 1258 653 309 161 70 chr9 88227543 88228144 -35848028 + MER21B LTR ERV1 101 756 -107 3 1258 369 0 0 0 chr9 88228447 88228488 -35847684 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1258 21 36 0 0 chr9 88228512 88228540 -35847632 + AT_rich Low_complexity Low_complexity 1 28 0 3 1258 571 229 62 39 chr9 88228745 88229019 -35847153 - ORR1E LTR MaLR -12 367 8 3 1258 855 250 0 27 chr9 88229112 88229334 -35846838 - B3 SINE B2 0 216 1 3 1258 1019 189 8 55 chr9 88229516 88229841 -35846331 - MTD LTR MaLR 0 419 10 3 1258 297 294 78 50 chr9 88229994 88230343 -35845829 - MLT1A0 LTR MaLR -16 392 3 3 1258 377 234 105 26 chr9 88231033 88231075 -35845097 + RSINE1 SINE B4 2 44 -121 3 1258 612 0 0 0 chr9 88231075 88231143 -35845029 + (GGA)n Simple_repeat Simple_repeat 3 70 0 3 1258 377 234 105 26 chr9 88231143 88231214 -35844958 + RSINE1 SINE B4 45 124 -41 3 1258 374 38 0 19 chr9 88231227 88231280 -35844892 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1258 369 0 0 0 chr9 88231280 88231320 -35844852 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1258 697 208 0 0 chr9 88231865 88231990 -35844182 + RSINE1 SINE B4 13 137 -28 3 1258 23 33 0 0 chr9 88232014 88232044 -35844128 + AT_rich Low_complexity Low_complexity 1 30 0 3 1258 577 219 30 26 chr9 88232049 88232195 -35843977 - B1_Mur1 SINE Alu -6 143 1 3 1258 212 147 0 0 chr9 88232620 88232654 -35843518 + B3 SINE B2 40 73 -143 3 1258 538 228 122 14 chr9 88232676 88232823 -35843349 + B3 SINE B2 53 215 -1 3 1258 1276 249 178 10 chr9 88233095 88233500 -35842672 - Lx6 LINE L1 0 7460 6988 4 1258 232 342 38 0 chr9 88234118 88234197 -35841975 - RLTR20C LTR ERVK 0 551 470 4 1258 854 214 75 65 chr9 88234201 88234480 -35841692 - RLTR20C LTR ERVK -250 284 3 4 1258 349 240 22 0 chr9 88234499 88234686 -35841486 + (TGGA)n Simple_repeat Simple_repeat 1 191 0 4 1258 312 175 87 14 chr9 88234980 88235078 -35841094 + MIR SINE MIR 116 226 -42 4 1258 234 0 0 0 chr9 88235476 88235502 -35840670 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1258 694 245 98 5 chr9 88236563 88236768 -35839404 + ID_B1 SINE B4 1 224 0 4 1258 743 250 0 0 chr9 88237108 88237252 -35838920 - B1_Mur1 SINE Alu -1 148 5 4 1258 281 372 20 26 chr9 88237888 88238040 -35838132 + MER117 DNA MER1_type 37 187 -10 4 1258 1220 61 0 0 chr9 88238599 88238746 -35837426 + B1_Mus1 SINE Alu 1 147 -1 4 1258 222 22 42 62 chr9 88238748 88238796 -35837376 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1258 2047 158 16 14 chr9 88238846 88239217 -35836955 - ORR1C1 LTR MaLR -6 372 1 4 1258 290 297 82 67 chr9 88239471 88239666 -35836506 + RMER5 LTR ERV1 17 214 -320 4 1258 661 304 83 50 chr9 88239811 88240071 -35836101 - RMER5 LTR ERV1 -16 518 270 4 1258 724 256 56 14 chr9 88240071 88240285 -35835887 + ID_B1 SINE B4 1 223 -1 4 1258 661 304 83 50 chr9 88240285 88240481 -35835691 - RMER5 LTR ERV1 -265 269 47 4 1258 587 328 73 43 chr9 88240584 88240887 -35835285 + MER2 DNA MER2_type 34 345 0 4 1258 1131 70 0 25 chr9 88241179 88241341 -35834831 + B2_Mm2 SINE B2 1 158 -37 4 1258 198 224 0 0 chr9 88242436 88242485 -35833687 + GA-rich Low_complexity Low_complexity 2 50 0 4 1258 646 237 22 0 chr9 88242921 88243056 -35833116 + B1_Mur1 SINE Alu 5 142 -7 4 1258 782 247 109 25 chr9 88243095 88243459 -35832713 + MTD LTR MaLR 1 399 -20 4 1258 455 148 33 58 chr9 88244207 88244311 -35831861 + PB1D10 SINE Alu 12 127 0 4 1258 1394 71 16 21 chr9 88244356 88244543 -35831629 + B2_Mm2 SINE B2 2 187 -8 4 1258 213 180 0 0 chr9 88247831 88247881 -35828291 + C-rich Low_complexity Low_complexity 5 54 0 4 1258 1056 205 118 4 chr9 88248105 88248360 -35827812 + MTE2b LTR MaLR 1 284 -95 4 1258 390 215 18 45 chr9 88249154 88249266 -35826906 + RSINE1 SINE B4 3 111 -54 4 1258 25 31 0 0 chr9 88249266 88249298 -35826874 + AT_rich Low_complexity Low_complexity 1 32 0 4 1258 685 297 0 0 chr9 88249539 88249694 -35826478 + RSINE1 SINE B4 3 157 -8 4 1258 2127 104 3 21 chr9 88249708 88250033 -35826139 + ORR1A2 LTR MaLR 1 319 -8 4 1258 970 96 19 0 chr9 88250042 88250198 -35825974 + (TATATG)n Simple_repeat Simple_repeat 3 161 0 4 1258 293 311 132 0 chr9 88250950 88251056 -35825116 - PB1D9 SINE Alu 0 120 1 4 1258 187 203 15 106 chr9 88251203 88251269 -35824903 + MIR SINE MIR 74 133 -75 4 1258 306 0 0 0 chr9 88252145 88252179 -35823993 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1258 403 264 80 65 chr9 88252649 88252787 -35823385 + RSINE1 SINE B4 4 143 -22 4 1258 327 145 0 0 chr9 88252802 88252871 -35823301 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1258 230 56 28 0 chr9 88252871 88252907 -35823265 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1258 495 0 0 0 chr9 88252966 88253021 -35823151 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1258 701 79 10 0 chr9 88253023 88253124 -35823048 + (GAAAA)n Simple_repeat Simple_repeat 3 104 0 4 1258 478 263 88 0 chr9 88253206 88253343 -35822829 - B1F SINE Alu 0 149 1 4 1258 282 160 0 0 chr9 88254011 88254061 -35822111 + T-rich Low_complexity Low_complexity 1 50 0 4 1258 486 194 0 69 chr9 88254610 88254726 -35821446 - PB1D9 SINE Alu 0 120 13 4 1258 429 223 142 30 chr9 88254726 88254744 -35821428 - ID_B1 SINE B4 0 224 76 4 1258 486 285 54 40 chr9 88255064 88255290 -35820882 - ID_B1 SINE B4 -59 233 4 4 1258 759 175 73 6 chr9 88255292 88255470 -35820702 - RCHARR1 DNA MER1_type -122 852 663 4 1258 281 258 53 11 chr9 88255491 88255585 -35820587 - RCHARR1 DNA MER1_type -734 240 143 4 1258 385 55 0 0 chr9 88255546 88255601 -35820571 + B1_Mur4 SINE Alu 96 150 0 4 1258 222 118 0 0 chr9 88255601 88255635 -35820537 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1258 216 222 0 0 chr9 88255796 88255841 -35820331 + B1F2 SINE Alu 12 56 -93 4 1258 294 50 0 0 chr9 88255843 88255883 -35820289 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1258 429 211 137 26 chr9 88255887 88256004 -35820168 + B1_Mur1 SINE Alu 2 131 -18 4 1258 249 33 0 0 chr9 88256024 88256054 -35820118 + (CACG)n Simple_repeat Simple_repeat 1 30 0 4 1258 180 0 0 0 chr9 88256800 88256820 -35819352 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 4 1258 189 0 0 0 chr9 88256974 88256995 -35819177 + (C)n Simple_repeat Simple_repeat 1 21 0 4 1258 29 0 0 0 chr9 88257319 88257348 -35818824 + AT_rich Low_complexity Low_complexity 1 29 0 4 1258 250 316 76 0 chr9 88257824 88257851 -35818321 + ID SINE ID 54 86 -138 4 1258 278 246 35 0 chr9 88257851 88257908 -35818264 + B1F2 SINE Alu 4 62 -87 4 1258 771 199 160 5 chr9 88260376 88260563 -35815609 + B3 SINE B2 1 216 0 4 1258 282 302 0 124 chr9 88260570 88260691 -35815481 + MT2B LTR ERVL 152 257 -344 4 1258 682 227 0 34 chr9 88260591 88260737 -35815435 + B1_Mur2 SINE Alu 9 149 0 4 1258 197 33 33 0 chr9 88262510 88262540 -35813632 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1258 705 157 9 0 chr9 88262540 88262655 -35813517 - B1_Mus2 SINE Alu -23 124 9 4 1258 549 308 0 0 chr9 88263115 88263261 -35812911 - ID_B1 SINE B4 0 224 79 4 1258 24 0 0 0 chr9 88263261 88263285 -35812887 + AT_rich Low_complexity Low_complexity 1 24 0 4 1258 582 230 0 0 chr9 88264297 88264410 -35811762 - PB1D9 SINE Alu -5 115 3 4 1258 451 241 73 0 chr9 88265495 88265632 -35810540 + B1F1 SINE Alu 2 148 -1 4 1258 228 324 85 9 chr9 88265675 88265797 -35810375 - MIRc SINE MIR -135 133 2 4 1258 608 70 0 11 chr9 88267052 88267139 -35809033 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 4 1258 433 170 64 28 chr9 88267415 88267524 -35808648 - L1MA8 LINE L1 0 6291 6179 4 1258 624 209 191 6 chr9 88267670 88267843 -35808329 + B3 SINE B2 2 206 -10 4 1258 830 225 23 0 chr9 88268952 88269125 -35807047 + B3 SINE B2 2 178 -38 4 1258 237 242 179 15 chr9 88269560 88269627 -35806545 + B1F1 SINE Alu 64 141 -8 4 1258 584 268 6 19 chr9 88269725 88269881 -35806291 - RSINE1 SINE B4 -10 155 2 4 1258 480 249 86 12 chr9 88269884 88270047 -35806125 - MLT1B LTR MaLR -215 175 1 4 1258 192 158 53 0 chr9 88270076 88270133 -35806039 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1258 5146 81 15 6 chr9 88270295 88270978 -35805194 + L1Md_F2 LINE L1 5893 6581 -1 4 1258 746 267 91 8 chr9 88271156 88271420 -35804752 + B4A SINE B4 2 287 -5 4 1258 209 213 0 21 chr9 88271435 88271483 -35804689 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1258 246 128 0 0 chr9 88271483 88271522 -35804650 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1258 345 24 0 0 chr9 88271882 88271924 -35804248 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1258 302 359 36 47 chr9 88272232 88272393 -35803779 + B4A SINE B4 1 159 -133 4 1258 342 0 0 0 chr9 88272393 88272431 -35803741 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1258 302 359 36 47 chr9 88272431 88272462 -35803710 + B4A SINE B4 160 191 -101 4 1258 2633 231 88 10 chr9 88272462 88273132 -35803040 + Lx8 LINE L1 6392 7113 -360 4 1258 1450 65 0 11 chr9 88273156 88273343 -35802829 + L1_Mus1 LINE L1 6382 6566 -1 4 1258 21 0 0 0 chr9 88273388 88273409 -35802763 + AT_rich Low_complexity Low_complexity 1 21 0 4 1258 388 225 22 0 chr9 88273411 88273500 -35802672 + RSINE1 SINE B4 51 141 -24 4 1258 745 225 133 62 chr9 88273609 88273865 -35802307 + Lx8 LINE L1 7199 7472 -1 4 1258 280 221 315 23 chr9 88275472 88275602 -35800570 - B3A SINE B2 -30 168 1 4 1258 499 276 32 0 chr9 88275670 88275793 -35800379 + B1F2 SINE Alu 3 129 -20 4 1258 328 323 0 0 chr9 88275864 88275966 -35800206 + PB1D7 SINE Alu 16 117 -3 4 1258 279 93 0 0 chr9 88275998 88276041 -35800131 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 4 1258 1169 75 0 0 chr9 88276041 88276188 -35799984 - B1_Mus1 SINE Alu 0 148 2 4 1258 454 139 0 107 chr9 88277417 88277538 -35798634 - PB1D10 SINE Alu -1 116 9 4 1258 499 200 9 19 chr9 88277602 88277709 -35798463 - B1F SINE Alu 0 149 44 4 1258 21 0 0 0 chr9 88278776 88278797 -35797375 + AT_rich Low_complexity Low_complexity 1 21 0 4 1258 247 286 37 49 chr9 88279234 88279315 -35796857 - ID4 SINE ID -2 81 2 4 1258 717 268 16 16 chr9 88279342 88279524 -35796648 + B3A SINE B2 1 182 -16 4 1258 186 133 0 0 chr9 88279524 88279554 -35796618 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1258 201 39 0 0 chr9 88279575 88279601 -35796571 + (CATA)n Simple_repeat Simple_repeat 3 28 0 4 1258 361 265 78 10 chr9 88279766 88279869 -35796303 + PB1D10 SINE Alu 1 110 -7 4 1258 355 250 28 0 chr9 88281199 88281271 -35794901 + ID SINE ID 2 75 -149 4 1258 520 245 39 0 chr9 88281322 88281424 -35794748 - B1F2 SINE Alu -42 107 2 4 1258 821 238 27 24 chr9 88281495 88281759 -35794413 + L1MA4 LINE L1 5662 5925 -375 4 1258 1475 48 27 0 chr9 88282396 88282582 -35793590 + B2_Mm1t SINE B2 1 191 -2 4 1258 2521 53 9 0 chr9 88282730 88283050 -35793122 + L1Md_F2 LINE L1 6258 6580 -2 4 1258 578 197 109 36 chr9 88283080 88283217 -35792955 + B1_Mus1 SINE Alu 2 148 0 5 1258 393 336 68 48 chr9 88283088 88283235 -35792937 + B4 SINE B4 94 243 -49 5 1258 1235 216 55 55 chr9 88283265 88283484 -35792688 + Lx8 LINE L1 6192 6406 -1067 5 1258 753 277 62 0 chr9 88283484 88283679 -35792493 - B3 SINE B2 -6 210 4 5 1258 1235 216 55 55 chr9 88283679 88283826 -35792346 + Lx8 LINE L1 6407 6558 -915 5 1258 1180 299 108 67 chr9 88283821 88284335 -35791837 + Lx8 LINE L1 6661 7199 -274 5 1258 1241 68 80 0 chr9 88284335 88284511 -35791661 + B2_Mm2 SINE B2 1 190 -5 5 1258 1180 299 108 67 chr9 88284511 88284775 -35791397 + Lx8 LINE L1 7200 7471 -2 5 1258 775 194 72 0 chr9 88285023 88285162 -35791010 - B1_Mur4 SINE Alu -1 149 1 5 1258 240 35 0 0 chr9 88285479 88285508 -35790664 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1258 213 39 0 0 chr9 88286189 88286215 -35789957 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1258 416 216 84 47 chr9 88287032 88287139 -35789033 - B1_Mus1 SINE Alu 0 148 38 5 1258 475 261 25 34 chr9 88287139 88287258 -35788914 - RSINE1 SINE B4 -45 120 3 5 1258 1153 37 0 0 chr9 88287463 88287597 -35788575 + B1_Mm SINE Alu 1 134 -13 5 1258 645 223 148 5 chr9 88288538 88288727 -35787445 + B3 SINE B2 1 216 0 5 1258 295 197 202 17 chr9 88289045 88289164 -35787008 + Lx5 LINE L1 6907 7047 -3 5 1258 603 189 27 40 chr9 88290093 88290242 -35785930 - B1_Mur3 SINE Alu 0 149 3 5 1258 339 263 0 102 chr9 88290462 88290589 -35785583 - PB1D10 SINE Alu -3 114 1 5 1258 3887 112 36 16 chr9 88290613 88291246 -35784926 + RMER6A LTR ERVK 109 754 -2 5 1258 923 100 85 0 chr9 88291246 88291376 -35784796 + B1_Mus2 SINE Alu 1 141 -6 5 1258 234 0 0 0 chr9 88291377 88291403 -35784769 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1258 24 67 0 0 chr9 88291555 88291600 -35784572 + AT_rich Low_complexity Low_complexity 1 45 0 5 1258 433 283 76 89 chr9 88291963 88292163 -35784009 + B4 SINE B4 2 201 -91 5 1258 725 221 0 26 chr9 88292163 88292316 -35783856 - B1_Mur2 SINE Alu 0 149 1 5 1258 433 283 76 89 chr9 88292316 88292340 -35783832 + B4 SINE B4 202 223 -69 5 1258 665 270 0 0 chr9 88292338 88292475 -35783697 + B4 SINE B4 81 217 -75 5 1258 204 40 0 0 chr9 88292480 88292505 -35783667 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 5 1258 513 238 110 44 chr9 88292505 88292641 -35783531 + RSINE1 SINE B4 4 148 -17 5 1258 204 40 0 0 chr9 88292652 88292677 -35783495 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1258 306 194 0 46 chr9 88292764 88292829 -35783343 + HAL1-3A_ME LINE L1 1975 2036 -822 5 1258 934 150 176 0 chr9 88293599 88293786 -35782386 - URR1B DNA MER1_type -1 224 5 5 1258 876 158 0 18 chr9 88293987 88294212 -35781960 + GA-rich Low_complexity Low_complexity 1 220 0 5 1258 180 111 0 0 chr9 88294220 88294247 -35781925 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 5 1258 21 36 0 0 chr9 88295153 88295181 -35780991 + AT_rich Low_complexity Low_complexity 1 28 0 5 1258 672 180 57 0 chr9 88295230 88295352 -35780820 + B1_Mus1 SINE Alu 1 129 -19 5 1258 211 213 282 118 chr9 88295984 88296069 -35780103 + B1F SINE Alu 3 101 -48 5 1258 426 252 44 15 chr9 88297313 88297450 -35778722 - B1F SINE Alu -8 141 1 5 1258 418 228 104 52 chr9 88297612 88297746 -35778426 + B3A SINE B2 20 160 -38 5 1258 495 95 0 0 chr9 88297749 88297823 -35778349 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1258 693 229 14 20 chr9 88297853 88298000 -35778172 + B1_Mur1 SINE Alu 2 147 -2 5 1258 216 141 14 99 chr9 88298402 88298419 -35777753 + A-rich Low_complexity Low_complexity 3 16 0 5 1258 1156 61 0 13 chr9 88298419 88298569 -35777603 + B1_Mus1 SINE Alu 1 148 0 5 1258 216 141 14 99 chr9 88298569 88298622 -35777550 + A-rich Low_complexity Low_complexity 17 67 0 5 1258 21 36 0 0 chr9 88298636 88298664 -35777508 + AT_rich Low_complexity Low_complexity 1 28 0 5 1258 290 281 0 0 chr9 88299766 88299862 -35776310 + L1M3 LINE L1 5743 5838 -345 5 1258 200 111 28 0 chr9 88300030 88300066 -35776106 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 5 1258 226 0 0 56 chr9 88300166 88300202 -35775970 + (TAA)n Simple_repeat Simple_repeat 1 34 0 5 1258 638 213 32 8 chr9 88300285 88300408 -35775764 + B1_Mur1 SINE Alu 5 130 -19 5 1258 924 36 0 0 chr9 88300410 88300522 -35775650 + (TAGG)n Simple_repeat Simple_repeat 4 115 0 5 1258 488 188 21 50 chr9 88300548 88300795 -35775377 + G-rich Low_complexity Low_complexity 1 239 0 5 1258 224 158 0 0 chr9 88300805 88300843 -35775329 + ID4 SINE ID 1 38 -45 5 1258 298 318 0 0 chr9 88300891 88300976 -35775196 - MER5A1 DNA MER1_type -50 116 32 5 1258 252 233 105 40 chr9 88301122 88301198 -35774974 + ID4 SINE ID 3 83 0 5 1258 1807 147 93 39 chr9 88302506 88302861 -35773311 + ORR1C1 LTR MaLR 5 378 0 5 1258 21 57 0 0 chr9 88303477 88303512 -35772660 + AT_rich Low_complexity Low_complexity 1 35 0 5 1258 560 240 83 0 chr9 88303783 88303904 -35772268 + ID_B1 SINE B4 85 215 -9 5 1258 291 298 132 36 chr9 88303791 88303958 -35772214 - YREP_Mm Unknown Unknown -1513 299 117 5 1258 838 221 7 0 chr9 88304002 88304156 -35772016 - B3 SINE B2 -54 162 8 5 1258 499 328 23 0 chr9 88304216 88304393 -35771779 - B3A SINE B2 -16 182 2 5 1258 706 196 77 35 chr9 88304407 88304550 -35771622 - B1_Mur2 SINE Alu 0 149 1 5 1258 347 227 55 0 chr9 88305666 88305776 -35770396 + L1MA7 LINE L1 6152 6267 -24 5 1258 2033 151 3 9 chr9 88305784 88306105 -35770067 + ORR1A2 LTR MaLR 1 319 -8 5 1258 413 238 79 0 chr9 88306142 88306268 -35769904 + L1MB7 LINE L1 5325 5460 -720 5 1258 280 265 8 64 chr9 88306481 88306606 -35769566 + L1MB7 LINE L1 5552 5669 -509 5 1258 637 265 93 48 chr9 88306661 88307038 -35769134 + L1MB7 LINE L1 5791 6184 0 5 1258 480 241 30 48 chr9 88307041 88307168 -35769004 + PB1D10 SINE Alu 10 129 -21 5 1258 360 0 0 0 chr9 88307388 88307428 -35768744 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1258 294 179 0 0 chr9 88307531 88307587 -35768585 + GA-rich Low_complexity Low_complexity 3 58 0 5 1258 25 0 0 0 chr9 88308147 88308172 -35768000 + AT_rich Low_complexity Low_complexity 1 25 0 5 1258 25 31 0 0 chr9 88308213 88308245 -35767927 + AT_rich Low_complexity Low_complexity 1 32 0 5 1258 517 209 32 6 chr9 88308552 88308663 -35767509 - PB1D9 SINE Alu -1 119 1 5 1258 279 0 0 0 chr9 88309056 88309087 -35767085 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1258 329 92 215 6 chr9 88309087 88309181 -35766991 - B2_Mm2 SINE B2 -14 181 52 5 1258 254 319 0 81 chr9 88309219 88309318 -35766854 + RSINE1 SINE B4 63 153 -12 5 1258 276 276 0 0 chr9 88309878 88309954 -35766218 - PB1D10 SINE Alu -2 115 40 5 1258 387 151 11 85 chr9 88310009 88310197 -35765975 + CT-rich Low_complexity Low_complexity 6 179 0 5 1258 307 385 39 0 chr9 88310270 88310400 -35765772 + MER20 DNA MER1_type 60 194 -25 5 1258 613 179 138 0 chr9 88311032 88311155 -35765017 - B1_Mur2 SINE Alu -8 141 2 5 1258 323 230 40 26 chr9 88311241 88311317 -35764855 - ID4_ SINE ID -6 77 1 5 1258 672 282 76 5 chr9 88311317 88311413 -35764759 - B4A SINE B4 -60 232 128 5 1258 198 0 0 0 chr9 88311413 88311435 -35764737 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1258 672 282 76 5 chr9 88311435 88311551 -35764621 - B4A SINE B4 -165 127 5 5 1258 1040 212 185 8 chr9 88312143 88312499 -35763673 - MTD LTR MaLR 0 419 1 5 1258 622 235 103 87 chr9 88312536 88312823 -35763349 - MER33 DNA MER1_type -43 281 11 5 1258 240 309 0 0 chr9 88312827 88312895 -35763277 - ID4 SINE ID -12 71 4 5 1258 516 245 39 83 chr9 88313663 88313687 -35762485 - B1F SINE Alu 0 149 127 5 1258 1070 63 181 6 chr9 88313687 88313847 -35762325 + B2_Mm2 SINE B2 1 188 -7 5 1258 516 245 39 83 chr9 88313847 88313978 -35762194 - B1F SINE Alu -23 126 1 5 1258 435 335 33 7 chr9 88313850 88314003 -35762169 - ID_B1 SINE B4 -10 214 58 5 1258 760 305 64 99 chr9 88314387 88314487 -35761685 + MTE2a LTR MaLR 1 112 -267 5 1258 312 48 0 0 chr9 88314487 88314529 -35761643 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 5 1258 760 305 64 99 chr9 88314529 88314821 -35761351 + MTE2a LTR MaLR 113 379 0 5 1258 493 290 7 40 chr9 88315226 88315377 -35760795 + RSINE1 SINE B4 20 165 0 5 1258 1230 34 0 7 chr9 88315402 88315550 -35760622 + B1_Mm SINE Alu 1 147 0 5 1258 380 214 141 10 chr9 88315979 88316078 -35760094 + PB1D10 SINE Alu 4 115 -2 5 1258 308 179 44 15 chr9 88316632 88316700 -35759472 + BC1_Mm scRNA scRNA 2 71 -81 5 1258 200 390 48 6 chr9 88316768 88316933 -35759239 + MER5B DNA MER1_type 7 178 0 5 1258 243 214 167 0 chr9 88317061 88317139 -35759033 + ID4_ SINE ID 2 90 -62 5 1258 479 301 22 33 chr9 88317334 88317516 -35758656 + B3A SINE B2 2 181 -17 5 1258 1164 74 0 0 chr9 88317563 88317711 -35758461 + B1_Mus1 SINE Alu 1 148 0 5 1258 22 70 0 0 chr9 88318005 88318048 -35758124 + AT_rich Low_complexity Low_complexity 1 43 0 5 1258 364 267 193 96 chr9 88318095 88318261 -35757911 + B3 SINE B2 35 216 0 5 1258 21 0 0 0 chr9 88318268 88318289 -35757883 + AT_rich Low_complexity Low_complexity 1 21 0 5 1258 1106 56 28 0 chr9 88318382 88318524 -35757648 + B1_Mus2 SINE Alu 2 147 0 5 1258 207 0 0 0 chr9 88318524 88318547 -35757625 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 5 1258 1294 281 139 12 chr9 88318562 88318962 -35757210 + Tigger6a DNA MER2_type 67 518 -565 5 1258 472 259 44 70 chr9 88318962 88319120 -35757052 + ID_B1 SINE B4 1 154 -70 5 1258 227 54 0 26 chr9 88319871 88319909 -35756263 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1258 529 262 58 0 chr9 88319914 88320017 -35756155 - B1_Mur2 SINE Alu -38 111 3 5 1258 387 289 69 44 chr9 88320147 88320306 -35755866 + RSINE1 SINE B4 3 165 0 6 1258 4441 155 40 8 chr9 88320405 88321210 -35754962 - Lx2 LINE L1 -13 6984 6154 6 1258 700 197 42 0 chr9 88321214 88321356 -35754816 + B1_Mus1 SINE Alu 1 148 0 6 1258 2023 127 23 3 chr9 88321405 88321753 -35754419 - L1_Mur1 LINE L1 -1179 4707 4353 6 1258 1221 54 0 0 chr9 88322006 88322153 -35754019 + B1_Mus2 SINE Alu 1 147 0 6 1258 455 194 14 36 chr9 88322153 88322292 -35753880 + A-rich Low_complexity Low_complexity 2 137 0 6 1258 803 208 14 3 chr9 88322302 88322444 -35753728 + B1_Mur2 SINE Alu 2 141 -8 6 1258 468 0 0 0 chr9 88322450 88322502 -35753670 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 6 1258 219 139 0 0 chr9 88322502 88322538 -35753634 + (CAGT)n Simple_repeat Simple_repeat 2 37 0 6 1258 475 259 78 54 chr9 88322720 88322924 -35753248 + B3 SINE B2 1 209 -7 6 1258 536 186 110 40 chr9 88322951 88323128 -35753044 + MTD LTR MaLR 183 399 -20 6 1258 265 258 32 0 chr9 88323371 88323433 -35752739 - PB1D10 SINE Alu -32 85 22 6 1258 402 278 103 14 chr9 88324023 88324169 -35752003 + RSINE1 SINE B4 1 159 -6 6 1258 244 279 79 34 chr9 88324740 88324829 -35751343 + PB1D10 SINE Alu 14 106 -11 6 1258 340 215 158 21 chr9 88324869 88324964 -35751208 + B1F SINE Alu 41 148 -1 6 1258 375 23 0 0 chr9 88325371 88325415 -35750757 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6 1258 600 272 21 43 chr9 88325660 88325700 -35750472 - B4A SINE B4 -81 211 172 6 1258 225 0 0 0 chr9 88325700 88325725 -35750447 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 1258 600 272 21 43 chr9 88325725 88325872 -35750300 - B4A SINE B4 -121 171 28 6 1258 352 270 24 144 chr9 88325932 88326104 -35750068 - B3A SINE B2 -7 186 33 6 1258 1273 85 0 6 chr9 88326104 88326281 -35749891 - B2_Mm2 SINE B2 -18 177 2 6 1258 352 351 23 62 chr9 88326281 88326316 -35749856 - B3A SINE B2 -166 32 4 6 1258 290 259 55 55 chr9 88326340 88326540 -35749632 + L1_Rod LINE L1 13 212 -6960 6 1258 7472 201 97 111 chr9 88326549 88327384 -35748788 + L1_Rod LINE L1 1979 2965 -2882 6 1258 183 42 0 0 chr9 88327384 88327408 -35748764 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1258 7472 201 97 111 chr9 88327408 88327490 -35748682 + L1_Rod LINE L1 2966 3028 -2819 6 1258 988 55 78 0 chr9 88327490 88327618 -35748554 + B1_Mus2 SINE Alu 1 138 -9 6 1258 216 0 0 0 chr9 88327618 88327642 -35748530 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1258 7472 201 97 111 chr9 88327642 88327861 -35748311 + L1_Rod LINE L1 3029 3236 -2611 6 1258 958 126 0 17 chr9 88327861 88328039 -35748133 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 6 1258 7472 201 97 111 chr9 88328039 88328094 -35748078 + L1_Rod LINE L1 3237 3251 -2596 6 1258 453 36 0 0 chr9 88328094 88328149 -35748023 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1258 7472 201 97 111 chr9 88328149 88329298 -35746874 + L1_Rod LINE L1 3252 4447 -1400 6 1258 1117 68 7 0 chr9 88329298 88329444 -35746728 + B1_Mus2 SINE Alu 1 147 0 6 1258 7472 201 97 111 chr9 88329444 88330392 -35745780 + L1_Rod LINE L1 4448 5223 -624 6 1258 2663 183 78 8 chr9 88330392 88330474 -35745698 - RLTR20B1 LTR ERVK -3 560 470 6 1258 219 69 0 0 chr9 88330474 88330503 -35745669 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1258 2663 183 78 8 chr9 88330503 88330943 -35745229 - RLTR20B1 LTR ERVK -94 469 3 6 1258 1892 192 30 47 chr9 88330945 88331457 -35744715 + L1_Rod LINE L1 5275 5759 -88 6 1258 198 0 0 0 chr9 88331461 88331483 -35744689 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1258 593 251 22 83 chr9 88331772 88331971 -35744201 + B3 SINE B2 1 196 -20 6 1258 943 99 154 6 chr9 88331971 88332133 -35744039 + B2_Mm2 SINE B2 1 186 -9 6 1258 593 251 22 83 chr9 88332133 88332163 -35744009 + B3 SINE B2 197 216 0 6 1258 291 28 0 0 chr9 88332721 88332757 -35743415 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1258 517 205 123 18 chr9 88335606 88335720 -35740452 + B1_Mus1 SINE Alu 2 127 -21 6 1258 395 247 38 12 chr9 88336127 88336231 -35739941 - B1F SINE Alu -7 113 2 6 1258 258 321 45 116 chr9 88336333 88336488 -35739684 - L2c LINE L2 -3 3384 3241 6 1258 345 227 13 0 chr9 88336761 88336836 -35739336 - B1F SINE Alu -73 76 1 6 1258 222 351 61 35 chr9 88336836 88336892 -35739280 - ID SINE ID -142 82 24 6 1258 299 314 65 19 chr9 88337886 88337993 -35738179 + B1F2 SINE Alu 1 112 -37 6 1258 500 231 63 27 chr9 88338623 88338734 -35737438 + B3 SINE B2 1 115 -101 6 1258 808 111 71 8 chr9 88338933 88339060 -35737112 + B1_Mus1 SINE Alu 1 135 -13 6 1258 1060 70 0 0 chr9 88339431 88339573 -35736599 - B1_Mus2 SINE Alu 0 147 6 6 1258 1007 109 84 12 chr9 88339578 88339745 -35736427 - B2_Mm1t SINE B2 -14 179 1 6 1258 384 299 28 7 chr9 88339797 88339942 -35736230 + B1_Mur1 SINE Alu 2 149 0 6 1258 1166 75 0 0 chr9 88340780 88340927 -35735245 + B1_Mm SINE Alu 1 147 0 6 1258 277 43 43 0 chr9 88340927 88340974 -35735198 + (CAAAAA)n Simple_repeat Simple_repeat 1 49 0 6 1258 1017 53 53 8 chr9 88341382 88341514 -35734658 + B1_Mm SINE Alu 2 139 -8 6 1258 218 220 102 0 chr9 88341703 88341762 -35734410 - PB1D10 SINE Alu -21 96 32 6 1258 398 38 0 0 chr9 88341798 88341851 -35734321 + L1Md_F2 LINE L1 6518 6570 -12 6 1258 618 178 104 0 chr9 88341927 88342062 -35734110 + B1_Mur3 SINE Alu 1 149 0 6 1259 247 200 0 0 chr9 88342934 88342979 -35733193 - L2a LINE L2 -89 3337 3293 6 1259 25 31 0 0 chr9 88346478 88346510 -35729662 + AT_rich Low_complexity Low_complexity 1 32 0 6 1259 180 111 0 0 chr9 88347306 88347333 -35728839 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1259 612 62 0 0 chr9 88349681 88349762 -35726410 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 1259 978 73 81 0 chr9 88351860 88351996 -35724176 - B1_Mus2 SINE Alu 0 147 1 6 1259 551 197 12 62 chr9 88352264 88352284 -35723888 + ID_B1 SINE B4 71 224 0 6 1259 971 65 7 28 chr9 88352284 88352426 -35723746 + B1_Mm SINE Alu 9 147 0 6 1259 204 135 0 0 chr9 88352426 88352463 -35723709 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1259 803 198 57 36 chr9 88352613 88352807 -35723365 + B3A SINE B2 1 198 0 6 1259 1109 69 7 0 chr9 88352890 88353035 -35723137 + B1_Mm SINE Alu 2 147 0 6 1259 180 77 0 0 chr9 88353036 88353062 -35723110 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1259 653 182 68 8 chr9 88353224 88353357 -35722815 + B1_Mur4 SINE Alu 3 143 -7 6 1259 25 31 0 0 chr9 88353440 88353472 -35722700 + AT_rich Low_complexity Low_complexity 1 32 0 6 1259 180 0 0 0 chr9 88353516 88353536 -35722636 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1259 418 301 11 11 chr9 88353552 88353646 -35722526 - RSINE1 SINE B4 -69 96 3 6 1259 363 269 118 15 chr9 88353770 88353906 -35722266 - B1_Mur4 SINE Alu 0 150 1 6 1259 988 100 129 6 chr9 88353952 88354123 -35722049 - B2_Mm2 SINE B2 -2 193 2 6 1259 252 274 69 91 chr9 88354323 88354471 -35721701 + MIR SINE MIR 2 147 -129 6 1259 256 263 18 0 chr9 88355287 88355344 -35720828 - RSINE1 SINE B4 -106 59 2 6 1259 463 293 95 71 chr9 88355421 88355590 -35720582 - B3A SINE B2 -15 183 11 6 1259 574 223 16 40 chr9 88355749 88355875 -35720297 + B1_Mur1 SINE Alu 27 149 0 6 1259 313 213 0 32 chr9 88355875 88355938 -35720234 + MT2B LTR ERVL 197 257 -344 6 1259 810 30 0 0 chr9 88355882 88355983 -35720189 + B1_Mm SINE Alu 47 147 0 6 1259 832 136 204 0 chr9 88356065 88356227 -35719945 + B2_Mm2 SINE B2 1 195 0 6 1259 21 57 0 0 chr9 88356461 88356496 -35719676 + AT_rich Low_complexity Low_complexity 1 35 0 6 1259 37 0 0 0 chr9 88356672 88356709 -35719463 + AT_rich Low_complexity Low_complexity 1 37 0 6 1259 577 214 15 53 chr9 88356833 88356966 -35719206 - B1_Mur4 SINE Alu -22 128 1 6 1259 252 199 33 166 chr9 88356966 88357006 -35719166 - MT2B LTR ERVL -454 147 128 6 1259 493 327 6 36 chr9 88358888 88359053 -35717119 - ID_B1 SINE B4 -9 215 56 6 1259 584 241 259 0 chr9 88359158 88359320 -35716852 - B3 SINE B2 -11 205 2 6 1259 201 365 24 0 chr9 88359337 88359422 -35716750 + MIR SINE MIR 146 232 -30 6 1259 1145 68 0 7 chr9 88359986 88360134 -35716038 + B1_Mus1 SINE Alu 1 147 -1 6 1259 234 0 0 0 chr9 88360134 88360160 -35716012 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1259 480 35 0 0 chr9 88360163 88360221 -35715951 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 6 1259 562 206 129 72 chr9 88360652 88360846 -35715326 + B3 SINE B2 2 206 -10 6 1259 588 203 38 23 chr9 88361058 88361189 -35714983 + B1_Mur1 SINE Alu 17 149 0 6 1259 1310 92 38 0 chr9 88361317 88361502 -35714670 + B2_Mm2 SINE B2 2 193 -2 6 1259 562 252 6 87 chr9 88361514 88361675 -35714497 + B1_Mur3 SINE Alu 2 149 0 6 1259 324 258 20 0 chr9 88361893 88361982 -35714190 + B1F1 SINE Alu 1 94 -26 6 1259 531 289 81 66 chr9 88362255 88362514 -35713658 + B4 SINE B4 6 268 -24 6 1259 222 37 0 0 chr9 88362617 88362644 -35713528 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1259 745 259 88 0 chr9 88364335 88364528 -35711644 - B3 SINE B2 -6 210 1 6 1259 455 276 198 12 chr9 88364554 88364726 -35711446 - ID_B1 SINE B4 -20 204 1 6 1259 229 177 52 52 chr9 88365004 88365075 -35711097 + B1F SINE Alu 41 149 0 6 1259 286 319 24 24 chr9 88365379 88365549 -35710623 + Lx8 LINE L1 6781 6950 -523 6 1259 636 278 59 25 chr9 88365584 88365787 -35710385 + Lx8 LINE L1 7116 7325 -148 6 1259 23 55 0 18 chr9 88365788 88365816 -35710356 + AT_rich Low_complexity Low_complexity 1 28 0 6 1259 967 70 86 0 chr9 88365816 88365944 -35710228 + B1_Mus1 SINE Alu 2 140 -8 6 1259 23 55 0 18 chr9 88365944 88365970 -35710202 + AT_rich Low_complexity Low_complexity 1 26 0 6 1259 427 222 126 20 chr9 88365973 88366081 -35710091 + PB1D9 SINE Alu 1 120 0 6 1259 777 196 7 7 chr9 88366267 88366406 -35709766 - B1_Mus2 SINE Alu -8 139 1 6 1259 512 220 10 10 chr9 88367063 88367164 -35709008 + B3 SINE B2 1 101 -115 7 1259 284 240 10 0 chr9 88367170 88367270 -35708902 + (TA)n Simple_repeat Simple_repeat 2 102 0 7 1259 349 296 82 22 chr9 88367674 88367809 -35708363 + B3A SINE B2 2 144 -54 7 1259 1250 153 9 9 chr9 88367929 88368140 -35708032 + B3 SINE B2 1 211 -5 7 1259 614 262 92 43 chr9 88368237 88368469 -35707703 - B4A SINE B4 -14 278 44 7 1259 310 200 237 13 chr9 88368898 88368974 -35707198 + ID_B1 SINE B4 115 207 -17 7 1259 534 278 6 39 chr9 88369069 88369249 -35706923 + Lx8 LINE L1 6630 6803 -670 7 1259 538 278 50 100 chr9 88369251 88369451 -35706721 - B3A SINE B2 -5 190 1 7 1259 845 279 92 67 chr9 88369451 88369524 -35706648 + Lx8 LINE L1 6791 6849 -624 7 1259 1094 89 0 0 chr9 88369524 88369670 -35706502 - B1_Mus1 SINE Alu -1 147 2 7 1259 845 279 92 67 chr9 88369670 88370041 -35706131 + Lx8 LINE L1 6850 7246 -227 7 1259 189 0 0 0 chr9 88370193 88370214 -35705958 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1259 267 265 36 89 chr9 88370242 88370354 -35705818 + MT2B LTR ERVL 157 262 -339 7 1259 512 211 18 35 chr9 88370255 88370368 -35705804 + PB1D9 SINE Alu 10 120 0 7 1259 233 176 69 0 chr9 88370791 88370858 -35705314 - B1F SINE Alu -27 122 46 7 1259 816 254 68 16 chr9 88371098 88371290 -35704882 - B3 SINE B2 -4 212 11 7 1259 322 229 49 107 chr9 88372283 88372405 -35703767 + MT2B LTR ERVL 149 263 -338 7 1259 688 156 0 105 chr9 88372309 88372452 -35703720 + B1_Mur3 SINE Alu 17 144 -5 7 1259 225 0 0 0 chr9 88372453 88372478 -35703694 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1259 910 46 124 44 chr9 88372764 88372901 -35703271 + B1_Mus1 SINE Alu 1 148 0 7 1259 283 203 203 0 chr9 88373395 88373459 -35702713 + B3A SINE B2 2 78 -120 7 1259 1171 48 14 0 chr9 88373549 88373694 -35702478 - B1_Mus2 SINE Alu 0 147 1 7 1259 230 0 0 32 chr9 88374134 88374165 -35702007 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 7 1259 21 36 0 0 chr9 88376399 88376427 -35699745 + GC_rich Low_complexity Low_complexity 1 28 0 7 1259 271 310 0 44 chr9 88377089 88377271 -35698901 + C-rich Low_complexity Low_complexity 3 176 0 7 1259 24 0 0 0 chr9 88377730 88377754 -35698418 + GC_rich Low_complexity Low_complexity 1 24 0 7 1259 21 0 0 0 chr9 88377938 88377959 -35698213 + GC_rich Low_complexity Low_complexity 1 21 0 7 1259 554 193 231 14 chr9 88378941 88379088 -35697084 - B3A SINE B2 -19 179 1 7 1259 234 241 0 0 chr9 88379740 88379794 -35696378 - ID_B1 SINE B4 -63 161 108 7 1259 28 0 0 0 chr9 88380035 88380063 -35696109 + AT_rich Low_complexity Low_complexity 1 28 0 7 1259 201 74 0 0 chr9 88380192 88380219 -35695953 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1259 353 280 19 74 chr9 88380231 88380339 -35695833 - PB1 SINE Alu -47 102 1 7 1259 1014 104 7 0 chr9 88380451 88380595 -35695577 + B1_Mus1 SINE Alu 4 148 0 7 1259 855 148 14 14 chr9 88380752 88380896 -35695276 - B1_Mus1 SINE Alu -2 146 3 7 1259 24 32 0 0 chr9 88380908 88380939 -35695233 + AT_rich Low_complexity Low_complexity 1 31 0 7 1259 1197 48 0 0 chr9 88381054 88381200 -35694972 + B1_Mm SINE Alu 2 147 0 7 1259 26 50 0 0 chr9 88381200 88381240 -35694932 + AT_rich Low_complexity Low_complexity 1 40 0 7 1259 466 286 8 43 chr9 88381442 88381559 -35694613 - RSINE1 SINE B4 -35 130 18 7 1259 1177 124 6 6 chr9 88381564 88381743 -35694429 - B2_Mm2 SINE B2 -15 180 2 7 1259 379 271 12 0 chr9 88381963 88381976 -35694196 + ID SINE ID 70 83 -141 7 1259 279 371 31 0 chr9 88381976 88382073 -35694099 + B1F2 SINE Alu 3 102 -47 7 1259 242 232 0 35 chr9 88382183 88382241 -35693931 + GA-rich Low_complexity Low_complexity 3 58 0 7 1259 965 184 84 0 chr9 88382313 88382492 -35693680 + B3 SINE B2 7 200 -16 7 1259 324 0 0 0 chr9 88382492 88382528 -35693644 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 7 1259 364 244 198 13 chr9 88382553 88382709 -35693463 + B3 SINE B2 22 206 -10 7 1259 183 42 0 0 chr9 88382729 88382753 -35693419 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1259 586 322 80 22 chr9 88382761 88383037 -35693135 + B4 SINE B4 1 292 0 7 1259 207 0 0 0 chr9 88383062 88383085 -35693087 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1259 288 77 0 0 chr9 88383167 88383206 -35692966 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1259 1031 95 0 75 chr9 88383206 88383366 -35692806 - B1_Mus1 SINE Alu 0 148 1 7 1259 189 0 0 0 chr9 88383382 88383403 -35692769 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7 1259 717 52 41 10 chr9 88383428 88383526 -35692646 - B2_Mm2 SINE B2 -94 101 1 7 1259 761 230 0 0 chr9 88383531 88383679 -35692493 - B1_Mur1 SINE Alu -1 148 1 7 1259 1791 149 82 10 chr9 88383770 88383827 -35692345 + ORR1A2 LTR MaLR 1 57 -270 7 1259 1099 56 28 0 chr9 88383827 88383970 -35692202 + B1_Mm SINE Alu 1 147 0 7 1259 1791 149 82 10 chr9 88383970 88384217 -35691955 + ORR1A2 LTR MaLR 58 327 0 7 1259 251 224 248 0 chr9 88384219 88384313 -35691859 + PB1D10 SINE Alu 1 117 0 7 1259 552 278 40 23 chr9 88384319 88384496 -35691676 + B3A SINE B2 3 182 -16 7 1259 237 159 0 0 chr9 88384839 88384883 -35691289 + GA-rich Low_complexity Low_complexity 2 45 0 7 1259 1347 259 77 0 chr9 88384968 88385304 -35690868 + ORR1D2 LTR MaLR 9 370 0 7 1259 933 259 80 23 chr9 88385319 88385707 -35690465 + L1MC1 LINE L1 5420 5829 -504 7 1259 510 260 0 1 chr9 88385710 88385824 -35690348 + B1F SINE Alu 1 112 -37 7 1259 916 142 0 22 chr9 88385824 88385961 -35690211 + B1_Mur3 SINE Alu 2 135 -14 7 1259 372 299 8 45 chr9 88385961 88385979 -35690193 + B1_Mus1 SINE Alu 111 128 -20 7 1259 583 262 102 117 chr9 88385987 88386108 -35690064 + L1MC1 LINE L1 5814 5949 -395 7 1259 690 228 149 6 chr9 88386108 88386289 -35689883 + B3 SINE B2 1 207 -9 7 1259 583 262 102 117 chr9 88386289 88386398 -35689774 + L1MC1 LINE L1 5950 6019 -325 7 1259 1119 58 0 7 chr9 88386398 88386538 -35689634 - B1_Mm SINE Alu -7 140 2 7 1259 583 262 102 117 chr9 88386538 88386559 -35689613 + L1MC1 LINE L1 6020 6038 -306 7 1259 1857 154 159 6 chr9 88386559 88386924 -35689248 + MTC LTR MaLR 1 421 0 7 1259 583 262 102 117 chr9 88386924 88387172 -35689000 + L1MC1 LINE L1 6039 6313 -31 7 1259 1400 191 85 101 chr9 88387172 88387216 -35688956 - MTD LTR MaLR 0 419 376 7 1259 1138 95 0 0 chr9 88387216 88387363 -35688809 + B1_Mus1 SINE Alu 1 147 -1 7 1259 1400 191 85 101 chr9 88387363 88387743 -35688429 - MTD LTR MaLR -44 375 2 7 1259 583 262 102 117 chr9 88387743 88387777 -35688395 + L1MC1 LINE L1 6314 6341 -3 7 1259 584 266 6 48 chr9 88387871 88388037 -35688135 - RSINE1 SINE B4 -2 163 5 7 1259 390 42 0 0 chr9 88388396 88388444 -35687728 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1259 1351 98 0 20 chr9 88388476 88388673 -35687499 - B2_Mm2 SINE B2 -1 194 2 7 1259 306 294 113 79 chr9 88388690 88388799 -35687373 - MER45B DNA Tip100 -415 625 521 7 1259 1055 84 0 34 chr9 88388799 88388946 -35687226 - B1_Mus2 SINE Alu -5 142 1 7 1259 306 294 113 79 chr9 88388946 88389065 -35687107 - MER45B DNA Tip100 -520 520 389 7 1259 535 331 12 18 chr9 88389112 88389281 -35686891 - MER45B DNA Tip100 -722 318 151 7 1259 1711 178 0 79 chr9 88389288 88389595 -35686577 + ORR1A1 LTR MaLR 1 288 -58 7 1259 1396 77 11 0 chr9 88389595 88389778 -35686394 + B2_Mm2 SINE B2 1 185 -10 7 1259 1711 178 0 79 chr9 88389778 88389837 -35686335 + ORR1A1 LTR MaLR 289 338 -8 7 1259 363 286 100 8 chr9 88389857 88389977 -35686195 - ID_B1 SINE B4 -1 223 93 7 1259 180 111 0 0 chr9 88390087 88390114 -35686058 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1259 242 185 82 47 chr9 88390117 88390202 -35685970 - B1_Mm SINE Alu 0 147 60 7 1259 291 268 38 0 chr9 88390128 88390223 -35685949 + B1F SINE Alu 48 149 0 7 1259 1099 80 0 0 chr9 88390445 88390583 -35685589 - B1_Mus1 SINE Alu -9 139 2 7 1259 640 240 23 23 chr9 88390591 88390766 -35685406 - MTC LTR MaLR 0 421 247 7 1259 1563 226 119 31 chr9 88390864 88391353 -35684819 + RMER19C LTR ERVK 80 611 0 7 1259 729 257 9 57 chr9 88391452 88391622 -35684550 + B3 SINE B2 1 167 -49 7 1259 2460 146 158 22 chr9 88391622 88392128 -35684044 + RMER15 LTR ERVL 1 575 0 7 1259 729 257 9 57 chr9 88392128 88392184 -35683988 + B3 SINE B2 168 216 0 7 1259 474 262 8 32 chr9 88392201 88392327 -35683845 + B3A SINE B2 41 163 -35 7 1259 2568 77 31 5 chr9 88392571 88392952 -35683220 + MTB LTR MaLR 2 392 -8 7 1259 807 274 72 27 chr9 88393082 88393375 -35682797 - MLT1C LTR MaLR -161 306 1 7 1259 300 333 39 16 chr9 88393470 88393598 -35682574 + ORR1E LTR MaLR 6 136 -223 7 1259 391 315 192 25 chr9 88393798 88394146 -35682026 + ORR1E-int LTR MaLR 58 504 -1076 7 1259 396 252 151 0 chr9 88394146 88394265 -35681907 + B1_Mur1 SINE Alu 5 141 -8 7 1259 263 346 109 77 chr9 88394265 88394521 -35681651 + ORR1E-int LTR MaLR 505 758 -822 7 1259 689 225 157 0 chr9 88394540 88394718 -35681454 + MTD LTR MaLR 3 208 -211 7 1259 1001 89 0 0 chr9 88394723 88394869 -35681303 + B1_Mus1 SINE Alu 3 148 0 7 1259 777 51 17 25 chr9 88394876 88394996 -35681176 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 7 1259 270 180 0 0 chr9 88395051 88395101 -35681071 + MTD LTR MaLR 227 276 -143 7 1259 676 294 196 38 chr9 88395135 88395686 -35680486 + ORR1E-int LTR MaLR 785 1422 -158 7 1259 210 37 0 0 chr9 88395686 88395713 -35680459 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1259 464 163 10 169 chr9 88395714 88395835 -35680337 - RMER17C LTR ERVK -135 275 185 7 1259 1160 98 0 6 chr9 88395835 88396009 -35680163 + (GAGAA)n Simple_repeat Simple_repeat 5 177 0 7 1259 464 163 10 169 chr9 88396009 88396094 -35680078 - RMER17C LTR ERVK -226 184 102 7 1259 650 164 26 0 chr9 88396096 88396212 -35679960 - PB1D9 SINE Alu -1 119 1 7 1259 269 264 17 0 chr9 88396255 88396333 -35679839 + ERVL-B4-int LTR ERVL 5595 5698 -59 7 1259 3331 187 123 0 chr9 88396340 88397167 -35679005 - ORR1A3-int LTR MaLR -660 1303 375 7 1259 1158 51 0 0 chr9 88397171 88397309 -35678863 + B1_Mm SINE Alu 1 138 -9 7 1259 503 16 0 15 chr9 88397309 88397374 -35678798 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 7 1259 1111 170 32 23 chr9 88397495 88397712 -35678460 - Lx7 LINE L1 -564 7132 6914 7 1259 605 24 12 0 chr9 88397731 88397814 -35678358 - L1Md_F2 LINE L1 0 6582 6499 7 1259 316 195 11 128 chr9 88397934 88398004 -35678168 - MTE-int LTR MaLR -99 1481 1422 7 1259 684 210 27 40 chr9 88398004 88398118 -35678054 + B1_Mur3 SINE Alu 1 117 -32 8 1259 1375 82 0 6 chr9 88398118 88398301 -35677871 - B2_Mm2 SINE B2 -12 183 2 8 1259 684 210 27 40 chr9 88398301 88398335 -35677837 + B1_Mur3 SINE Alu 118 147 -2 8 1259 316 195 11 128 chr9 88398335 88398358 -35677814 - MTE-int LTR MaLR -159 1421 1399 7 1259 1166 35 14 0 chr9 88398358 88398502 -35677670 + B1_Mm SINE Alu 2 147 0 8 1259 192 149 0 0 chr9 88398502 88398549 -35677623 + (CAAAAA)n Simple_repeat Simple_repeat 6 52 0 8 1259 210 71 0 0 chr9 88398602 88398630 -35677542 + (TC)n Simple_repeat Simple_repeat 2 29 0 8 1259 369 0 0 0 chr9 88398631 88398672 -35677500 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1259 1136 329 80 25 chr9 88398686 88399126 -35677046 - MTE-int LTR MaLR -242 1338 875 7 1259 280 326 44 44 chr9 88399129 88399264 -35676908 - ID_B1 SINE B4 -8 216 82 8 1259 404 318 90 26 chr9 88399263 88399418 -35676754 - MTE-int LTR MaLR -679 901 737 7 1259 685 332 70 24 chr9 88399433 88399804 -35676368 - MTE-int LTR MaLR -1150 430 43 7 1259 694 181 16 0 chr9 88399825 88399952 -35676220 + B1_Mus1 SINE Alu 6 134 -14 8 1259 364 19 19 19 chr9 88399957 88400011 -35676161 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1259 454 291 153 62 chr9 88400098 88400373 -35675799 - MTEa LTR MaLR -58 321 22 8 1259 322 338 36 24 chr9 88400377 88400594 -35675578 - L1MC5 LINE L1 -1055 6987 6688 8 1259 432 0 0 0 chr9 88400594 88400642 -35675530 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1259 536 65 0 0 chr9 88401349 88401426 -35674746 + B1_Mm SINE Alu 71 147 0 8 1259 526 227 62 8 chr9 88401440 88401569 -35674603 + ID_B1 SINE B4 78 213 -11 8 1259 405 0 0 0 chr9 88401671 88401716 -35674456 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 8 1259 1166 69 7 0 chr9 88401726 88401871 -35674301 - B1_Mm SINE Alu 0 147 2 8 1259 207 171 0 0 chr9 88401895 88401930 -35674242 + GA-rich Low_complexity Low_complexity 2 36 0 8 1259 556 239 76 21 chr9 88401930 88401944 -35674228 - RSINE1 SINE B4 -11 154 142 8 1259 468 0 0 0 chr9 88401944 88401996 -35674176 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1259 556 239 76 21 chr9 88401996 88402126 -35674046 - RSINE1 SINE B4 -24 141 2 8 1259 614 194 65 36 chr9 88402186 88402325 -35673847 - B1_Mur2 SINE Alu 0 149 7 8 1259 786 144 76 0 chr9 88402340 88402472 -35673700 - B1_Mur3 SINE Alu -7 142 1 8 1259 23 0 0 0 chr9 88402514 88402537 -35673635 + AT_rich Low_complexity Low_complexity 1 23 0 8 1259 3563 18 2 0 chr9 88402674 88403069 -35673103 + MTA_Mm LTR MaLR 1 396 0 8 1259 9385 32 5 1 chr9 88403069 88404163 -35672009 + MTA_Mm-int LTR MaLR 1 1098 0 8 1259 3547 20 2 0 chr9 88404163 88404558 -35671614 + MTA_Mm LTR MaLR 1 396 0 8 1259 681 226 152 26 chr9 88404583 88404748 -35671424 + B3 SINE B2 2 192 -24 8 1259 2242 109 0 63 chr9 88404748 88405099 -35671073 - ORR1A4 LTR MaLR 0 329 1 8 1259 681 226 152 26 chr9 88405099 88405124 -35671048 + B3 SINE B2 193 216 0 8 1259 35 24 0 0 chr9 88405126 88405168 -35671004 + AT_rich Low_complexity Low_complexity 1 42 0 8 1259 1232 53 12 6 chr9 88405171 88405341 -35670831 + B2_Mm2 SINE B2 1 171 -24 8 1259 1019 83 0 0 chr9 88405348 88405480 -35670692 + B1_Mus1 SINE Alu 2 133 -15 8 1259 273 57 0 0 chr9 88405482 88405517 -35670655 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1259 1105 71 17 12 chr9 88405522 88405694 -35670478 + B2_Mm2 SINE B2 23 195 0 8 1259 21 0 0 0 chr9 88405705 88405726 -35670446 + AT_rich Low_complexity Low_complexity 1 21 0 8 1259 4075 158 64 68 chr9 88405786 88406680 -35669492 + RMER19B LTR ERVK 1 890 -12 8 1259 222 37 0 0 chr9 88406792 88406819 -35669353 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 8 1259 1099 52 0 0 chr9 88406819 88406953 -35669219 - B1_Mus2 SINE Alu -13 134 1 8 1259 216 0 0 0 chr9 88407748 88407772 -35668400 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1259 1210 48 0 0 chr9 88407872 88408019 -35668153 + B1_Mm SINE Alu 1 147 0 8 1259 180 0 0 0 chr9 88408057 88408077 -35668095 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 1259 217 338 39 0 chr9 88408711 88408788 -35667384 + ID4 SINE ID 1 80 -3 8 1259 405 298 48 0 chr9 88408908 88409032 -35667140 - B1F SINE Alu -2 147 18 8 1259 615 293 142 48 chr9 88409060 88409476 -35666696 - L1M2 LINE L1 -374 5794 5340 8 1259 1312 84 10 26 chr9 88409477 88409672 -35666500 - B2_Mm1a SINE B2 -1 192 1 8 1259 1047 90 157 0 chr9 88409824 88409990 -35666182 - B2_Mm1t SINE B2 0 193 2 8 1259 1115 76 7 14 chr9 88410009 88410156 -35666016 - B1_Mus2 SINE Alu 0 147 2 8 1259 300 279 114 9 chr9 88410710 88410815 -35665357 - RSINE1 SINE B4 -35 130 15 8 1259 248 156 188 0 chr9 88410838 88410902 -35665270 - L1M2 LINE L1 -847 5293 5218 8 1259 229 309 0 0 chr9 88410917 88410985 -35665187 - ID4_ SINE ID -14 69 2 8 1259 216 0 0 0 chr9 88411029 88411053 -35665119 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1259 645 250 20 56 chr9 88411297 88411492 -35664680 - B3A SINE B2 -10 188 1 8 1259 304 264 39 59 chr9 88411574 88411727 -35664445 - L1M2 LINE L1 -1107 5036 4887 8 1259 414 169 0 0 chr9 88411729 88411818 -35664354 + CT-rich Low_complexity Low_complexity 2 90 0 8 1259 1158 55 14 14 chr9 88411850 88411998 -35664174 - B1_Mus1 SINE Alu 0 148 1 8 1259 299 25 25 0 chr9 88412000 88412040 -35664132 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 8 1259 1325 80 11 0 chr9 88412040 88412216 -35663956 - B2_Mm1t SINE B2 -14 179 2 8 1259 1099 266 37 73 chr9 88412222 88412460 -35663712 - L1M2 LINE L1 -1253 4890 4655 8 1259 1357 106 26 0 chr9 88412460 88412649 -35663523 - B2_Mm2 SINE B2 0 195 2 8 1259 1099 266 37 73 chr9 88412649 88412753 -35663419 - L1M2 LINE L1 -1489 4654 4555 8 1259 687 184 7 78 chr9 88412753 88412906 -35663266 - B1_Mus1 SINE Alu -5 143 2 8 1259 1099 266 37 73 chr9 88412906 88412943 -35663229 - L1M2 LINE L1 -1589 4554 4524 8 1259 809 176 0 35 chr9 88412960 88413101 -35663071 - B1_Mur2 SINE Alu -12 137 2 8 1259 438 274 47 82 chr9 88413101 88413443 -35662729 - L1M2 LINE L1 -2020 4123 3794 8 1259 360 269 216 0 chr9 88413539 88413673 -35662499 - RSINE1 SINE B4 -2 163 1 8 1259 323 78 0 0 chr9 88413685 88413736 -35662436 + B1_Mur2 SINE Alu 99 149 0 8 1259 350 152 17 0 chr9 88413775 88413817 -35662355 - B2_Mm2 SINE B2 -66 129 87 8 1259 221 365 46 18 chr9 88413817 88413926 -35662246 + PB1D7 SINE Alu 1 112 -8 8 1259 221 136 217 17 chr9 88414284 88414344 -35661828 - B1_Mur3 SINE Alu -5 144 73 8 1259 325 211 207 99 chr9 88414507 88414552 -35661620 - B1_Mur4 SINE Alu -15 135 82 8 1259 919 85 255 0 chr9 88414552 88414705 -35661467 - B2_Mm2 SINE B2 -3 192 1 8 1259 325 211 207 99 chr9 88414705 88414780 -35661392 - B1_Mur4 SINE Alu -69 81 2 8 1259 516 65 183 0 chr9 88415584 88415677 -35660495 + B1_Mus2 SINE Alu 29 138 -9 8 1259 24 0 0 0 chr9 88417906 88417930 -35658242 + GC_rich Low_complexity Low_complexity 1 24 0 8 1259 860 292 29 22 chr9 88418988 88419261 -35656911 - B4 SINE B4 -14 278 4 8 1259 1258 93 60 6 chr9 88419329 88419512 -35656660 - B2_Mm2 SINE B2 -2 193 1 8 1259 1028 226 180 12 chr9 88419512 88419857 -35656315 - MTD LTR MaLR -14 405 12 8 1259 209 262 4 4 chr9 88420464 88420532 -35655640 - MIRb SINE MIR -40 228 161 8 1259 2356 142 81 39 chr9 88420790 88421222 -35654950 + RLTR11B LTR ERVK 1 450 -3 8 1259 1176 62 0 0 chr9 88421331 88421475 -35654697 + B1_Mus1 SINE Alu 5 148 0 8 1259 541 56 0 0 chr9 88421561 88421632 -35654540 - U4 snRNA snRNA -74 71 1 8 1259 4587 32 0 0 chr9 88421660 88422185 -35653987 + L1Md_F3 LINE L1 6048 6572 -12 8 1259 451 221 47 16 chr9 88422303 88422432 -35653740 + B1_Mur4 SINE Alu 18 150 0 8 1259 22 0 0 0 chr9 88423161 88423183 -35652989 + AT_rich Low_complexity Low_complexity 1 22 0 8 1259 518 257 113 43 chr9 88423193 88423494 -35652678 - Lx9 LINE L1 0 7644 7323 8 1259 665 127 122 122 chr9 88423523 88423572 -35652600 - ORR1C2 LTR MaLR -22 362 316 8 1259 1149 62 14 0 chr9 88423572 88423717 -35652455 + B1_Mus2 SINE Alu 1 147 0 8 1259 665 127 122 122 chr9 88423717 88423855 -35652317 - ORR1C2 LTR MaLR -69 315 175 8 1259 269 155 0 17 chr9 88423857 88423916 -35652256 + G-rich Low_complexity Low_complexity 4 61 0 8 1259 562 162 136 84 chr9 88424016 88424171 -35652001 - ORR1C2 LTR MaLR -215 163 1 8 1259 263 250 0 0 chr9 88424212 88424264 -35651908 - Lx9 LINE L1 -451 7193 7142 8 1259 404 211 31 21 chr9 88424290 88424387 -35651785 + PB1D10 SINE Alu 19 116 -1 8 1259 338 248 26 110 chr9 88424966 88425120 -35651052 + B1F SINE Alu 9 149 0 8 1259 180 97 0 0 chr9 88425470 88425501 -35650671 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 8 1259 358 289 148 74 chr9 88425583 88425826 -35650346 + B4 SINE B4 1 261 -31 8 1259 1168 33 13 0 chr9 88425860 88426013 -35650159 + (CA)n Simple_repeat Simple_repeat 1 155 0 8 1259 1003 212 43 5 chr9 88426182 88426390 -35649782 - B3 SINE B2 0 216 1 8 1259 376 325 100 50 chr9 88426507 88426747 -35649425 + MTEa LTR MaLR 7 258 -121 8 1259 818 55 0 0 chr9 88426910 88427020 -35649152 + B1_Mus1 SINE Alu 39 148 0 8 1259 212 98 48 32 chr9 88427024 88427087 -35649085 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 8 1259 237 301 125 31 chr9 88428349 88428445 -35647727 - PB1D10 SINE Alu -7 110 6 8 1259 2703 150 5 5 chr9 88428631 88429139 -35647033 - Lx3C LINE L1 -1006 5970 5467 8 1259 3587 187 65 88 chr9 88429141 88429625 -35646547 - Lx7 LINE L1 -1494 6202 5730 8 1259 1262 112 27 0 chr9 88429625 88429812 -35646360 - B2_Mm1t SINE B2 -1 192 1 8 1259 3587 151 47 81 chr9 88429812 88430437 -35645735 - Lx7 LINE L1 -150 5730 5099 8 1259 877 159 18 18 chr9 88430438 88430605 -35645567 - B2_Mm2 SINE B2 -2 193 27 8 1259 209 0 97 0 chr9 88430605 88430636 -35645536 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 8 1259 1102 96 0 7 chr9 88430637 88430784 -35645388 - B1_Mus1 SINE Alu -1 147 2 8 1259 236 150 0 0 chr9 88430785 88430825 -35645347 - B2_Mm2 SINE B2 -154 41 2 8 1259 539 152 0 0 chr9 88430825 88430917 -35645255 - Lx7 LINE L1 -780 5100 5009 8 1259 1502 147 0 0 chr9 88430916 88431148 -35645024 + Lx7 LINE L1 4781 5012 -868 8 1259 957 210 45 0 chr9 88431648 88431848 -35644324 - B3 SINE B2 -6 210 2 8 1259 430 174 0 44 chr9 88431939 88432029 -35644143 + B1_Mus2 SINE Alu 54 139 -8 8 1259 7799 86 3 2 chr9 88432264 88433408 -35642764 + L1_Mus2 LINE L1 4794 5938 -628 8 1259 216 0 0 0 chr9 88433520 88433544 -35642628 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1259 2841 176 44 6 chr9 88433562 88434106 -35642066 + RMER15 LTR ERVL 11 575 0 8 1259 1209 261 44 30 chr9 88434697 88435064 -35641108 - MTD LTR MaLR 0 419 48 8 1259 468 0 0 0 chr9 88435144 88435196 -35640976 + (TA)n Simple_repeat Simple_repeat 2 53 0 8 1259 331 95 63 0 chr9 88435274 88435337 -35640835 + T-rich Low_complexity Low_complexity 2 68 0 9 1259 6954 197 59 41 chr9 88435338 88435353 -35640819 - Lx6 LINE L1 0 7460 7446 9 1259 1190 49 0 0 chr9 88435353 88435497 -35640675 - B1_Mm SINE Alu 0 147 4 9 1259 6954 197 59 41 chr9 88435497 88435576 -35640596 - Lx6 LINE L1 -15 7445 7349 9 1259 231 36 0 0 chr9 88435576 88435604 -35640568 + (CACCT)n Simple_repeat Simple_repeat 4 31 0 9 1259 6954 197 59 41 chr9 88435604 88435805 -35640367 - Lx6 LINE L1 -112 7348 7148 9 1259 1657 26 0 10 chr9 88435805 88435999 -35640173 + B2_Mm1a SINE B2 2 193 0 9 1259 6954 197 59 41 chr9 88435999 88437174 -35638998 - Lx6 LINE L1 -313 7147 5963 9 1259 250 371 43 0 chr9 88437234 88437374 -35638798 + L2a LINE L2 3066 3211 -215 9 1259 180 328 16 0 chr9 88437396 88437460 -35638712 + L2a LINE L2 3286 3350 -76 9 1259 450 0 0 0 chr9 88437584 88437634 -35638538 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 9 1259 198 0 0 0 chr9 88437700 88437722 -35638450 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 9 1259 4976 146 1 50 chr9 88438071 88438357 -35637815 + Lx3_Mus LINE L1 5029 5297 -580 9 1259 1119 66 0 0 chr9 88438357 88438494 -35637678 + B1_Mus2 SINE Alu 1 137 -10 9 1259 4976 96 3 51 chr9 88438494 88439407 -35636765 + Lx3_Mus LINE L1 5298 6161 -848 9 1259 26 50 0 0 chr9 88439484 88439524 -35636648 + AT_rich Low_complexity Low_complexity 1 40 0 9 1259 683 214 14 14 chr9 88439524 88439666 -35636506 - B1_Mus1 SINE Alu 0 148 7 9 1259 360 211 19 112 chr9 88439575 88439682 -35636490 - MT2B LTR ERVL -350 251 155 9 1259 565 275 21 102 chr9 88439689 88439787 -35636385 - B3 SINE B2 0 216 135 9 1259 1188 28 14 0 chr9 88439787 88439929 -35636243 + B1_Mus2 SINE Alu 2 145 -2 9 1259 282 29 0 0 chr9 88439929 88439964 -35636208 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1259 565 275 21 102 chr9 88439964 88440099 -35636073 - B3 SINE B2 -82 134 2 9 1259 462 176 0 12 chr9 88440757 88440843 -35635329 - B1_Mus2 SINE Alu -7 140 56 9 1259 373 295 103 55 chr9 88440932 88441097 -35635075 + ID_B1 SINE B4 51 223 -1 9 1259 689 233 13 27 chr9 88440952 88441102 -35635070 + B1_Mur3 SINE Alu 2 149 0 9 1259 361 306 352 45 chr9 88441137 88441365 -35634807 - MLT1F2 LTR MaLR -165 395 95 9 1259 417 231 0 13 chr9 88441365 88441444 -35634728 + PB1D9 SINE Alu 1 78 -42 9 1259 605 179 76 69 chr9 88441626 88441770 -35634402 - B1_Mus2 SINE Alu -2 145 1 9 1259 1167 68 0 0 chr9 88441809 88441956 -35634216 + B1_Mus1 SINE Alu 2 148 0 9 1259 1860 177 96 0 chr9 88442265 88442610 -35633562 + RLTR14 LTR ERV1 3 380 -2 9 1259 1079 155 0 103 chr9 88443795 88444047 -35632125 + URR1A DNA MER1_type 1 226 0 9 1259 1960 262 28 60 chr9 88444709 88445022 -35631150 - Lx5 LINE L1 -4 7046 6739 9 1259 1078 89 0 0 chr9 88445022 88445168 -35631004 + B1_Mus2 SINE Alu 2 147 0 9 1259 1960 221 151 31 chr9 88445168 88445531 -35630641 - Lx5 LINE L1 -566 6894 6529 9 1259 230 29 59 0 chr9 88446090 88446124 -35630048 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 9 1259 807 236 35 10 chr9 88446124 88446319 -35629853 - B3 SINE B2 -15 201 1 9 1259 1211 66 54 6 chr9 88446477 88446645 -35629527 + B2_Mm1t SINE B2 1 176 -17 9 1259 801 189 7 26 chr9 88447262 88447414 -35628758 + B1_Mur4 SINE Alu 2 150 0 9 1259 1170 44 0 0 chr9 88447730 88447867 -35628305 + B1_Mm SINE Alu 1 137 -10 9 1259 192 40 0 0 chr9 88447867 88447892 -35628280 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1259 1478 64 0 0 chr9 88448073 88448276 -35627896 + 7SLRNA srpRNA srpRNA 1 203 -111 9 1259 26 50 0 0 chr9 88448466 88448506 -35627666 + AT_rich Low_complexity Low_complexity 1 40 0 9 1259 337 124 12 34 chr9 88448506 88448572 -35627600 - B2_Mm2 SINE B2 -83 115 46 9 1259 1100 143 17 0 chr9 88448621 88448796 -35627376 - B2_Mm1t SINE B2 -13 180 3 9 1259 908 182 193 0 chr9 88448993 88449174 -35626998 - B3 SINE B2 0 216 1 9 1259 1399 79 26 0 chr9 88450191 88450381 -35625791 + B2_Mm2 SINE B2 1 195 0 9 1259 1179 48 0 7 chr9 88450391 88450538 -35625634 + B1_Mm SINE Alu 2 147 0 9 1259 252 100 0 0 chr9 88450538 88450578 -35625594 + (A)n Simple_repeat Simple_repeat 1 40 0 9 1259 304 359 20 27 chr9 88450831 88450980 -35625192 - ORR1E LTR MaLR -168 191 44 9 1259 1176 61 7 0 chr9 88451020 88451167 -35625005 - B1_Mus1 SINE Alu 0 148 1 9 1259 226 333 59 13 chr9 88451707 88451859 -35624313 - L1M5 LINE L1 -3235 2911 2753 9 1259 234 0 0 0 chr9 88452338 88452364 -35623808 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1259 525 196 20 27 chr9 88452928 88453075 -35623097 - B2_Mm2 SINE B2 -11 184 39 9 1259 1002 243 21 37 chr9 88453469 88453794 -35622378 - RLTR15 LTR ERVK -39 320 1 9 1259 1046 90 20 14 chr9 88453935 88454081 -35622091 - B1_Mus1 SINE Alu 0 148 2 9 1259 325 22 0 21 chr9 88454184 88454231 -35621941 - RLTR15 LTR ERVK -21 338 293 9 1259 884 80 79 14 chr9 88454234 88454374 -35621798 + B1_Mur4 SINE Alu 2 150 0 9 1259 1611 139 22 0 chr9 88454391 88454664 -35621508 - RLTR15 LTR ERVK -80 279 1 9 1259 3634 215 72 49 chr9 88454665 88454902 -35621270 - MYSERV6-int LTR ERVK -121 8838 8724 9 1259 1187 62 0 0 chr9 88454902 88455047 -35621125 - B1_Mus2 SINE Alu 0 147 3 9 1259 3634 204 58 50 chr9 88455047 88456009 -35620163 - MYSERV6-int LTR ERVK -236 8723 7814 9 1259 1244 34 7 0 chr9 88456010 88456156 -35620016 + B1_Mus2 SINE Alu 1 147 0 9 1259 1337 98 5 5 chr9 88456233 88456417 -35619755 - B2_Mm2 SINE B2 -10 185 2 9 1259 816 51 0 25 chr9 88456429 88456547 -35619625 - B2_Mm1a SINE B2 0 193 79 9 1259 2458 116 102 18 chr9 88456547 88456996 -35619176 + RLTR1C LTR ERV1 1 487 -16 9 1259 560 99 0 0 chr9 88457012 88457093 -35619079 - B2_Mm2 SINE B2 -114 81 1 9 1259 1147 55 7 0 chr9 88457120 88457265 -35618907 - B1_Mm SINE Alu -1 146 1 9 1259 1613 47 0 0 chr9 88457270 88457462 -35618710 - B2_Mm1a SINE B2 0 193 2 9 1259 332 239 123 26 chr9 88457491 88457646 -35618526 - RMER4A LTR ERVK -42 424 255 9 1259 537 325 87 56 chr9 88457648 88457791 -35618381 - MYSERV6-int LTR ERVK -1411 5139 4982 9 1259 1156 55 0 14 chr9 88457791 88457938 -35618234 + B1_Mus2 SINE Alu 3 147 0 9 1259 219 36 0 0 chr9 88457941 88457969 -35618203 + (CAAG)n Simple_repeat Simple_repeat 2 29 0 9 1259 1083 218 39 76 chr9 88457969 88458326 -35617846 - MYSERV6-int LTR ERVK -1598 728 378 9 1259 1016 61 53 0 chr9 88458357 88458489 -35617683 - B1_Mm SINE Alu -8 139 1 9 1259 2019 284 45 38 chr9 88458489 88459304 -35616868 - MYSERV6-int LTR ERVK -1855 4695 3875 9 1259 3798 188 14 25 chr9 88459304 88459323 -35616849 - MYSERV6-int LTR ERVK -5274 3685 3667 9 1259 2021 185 97 80 chr9 88459323 88459480 -35616692 - RMER16 LTR ERVK 0 533 403 9 1259 1176 43 0 0 chr9 88459480 88459618 -35616554 - B1_Mus2 SINE Alu -8 139 2 9 1259 2021 185 97 80 chr9 88459618 88459984 -35616188 - RMER16 LTR ERVK -131 402 1 9 1259 3798 188 14 25 chr9 88459984 88460759 -35615413 - MYSERV6-int LTR ERVK -5293 3666 2900 9 1259 372 234 45 76 chr9 88460737 88460894 -35615278 + MYSERV-int LTR ERVK 6393 6544 -6 9 1259 1407 117 13 0 chr9 88460898 88461129 -35615043 + RLTR12A LTR ERVK 1 234 -334 9 1259 529 154 29 0 chr9 88461123 88461227 -35614945 + RLTR12A LTR ERVK 436 542 -26 9 1259 1042 78 14 7 chr9 88461273 88461415 -35614757 - B1_Mus2 SINE Alu 0 147 5 9 1259 1351 98 6 0 chr9 88461664 88461847 -35614325 + B2_Mm1t SINE B2 2 185 -8 9 1259 198 0 0 0 chr9 88461908 88461930 -35614242 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1259 266 252 64 64 chr9 88462002 88462112 -35614060 + MurSatRep1 Unknown Unknown 619 728 -1409 9 1259 1075 86 7 0 chr9 88462636 88462776 -35613396 - B1_Mm SINE Alu -5 142 2 9 1259 1407 104 1 12 chr9 88462996 88463218 -35612954 + L1_Mur1 LINE L1 5117 5334 -806 9 1259 1201 68 0 0 chr9 88463221 88463367 -35612805 + B1_Mus2 SINE Alu 1 146 -1 9 1259 570 262 21 14 chr9 88464067 88464293 -35611879 + MMSAT4 Satellite Satellite 1 227 0 9 1259 412 288 18 18 chr9 88464313 88464954 -35611218 + MMSAT4 Satellite Satellite 1 641 0 9 1259 538 293 55 102 chr9 88465095 88465479 -35610693 - RMER20B LTR ERVK -28 599 234 9 1259 937 76 217 0 chr9 88465739 88465896 -35610276 + B2_Mm2 SINE B2 1 191 -4 9 1259 603 89 400 0 chr9 88465993 88466128 -35610044 + B2_Mm1t SINE B2 2 190 -3 9 1259 1471 74 5 0 chr9 88466316 88466506 -35609666 + B2_Mm1t SINE B2 1 191 -2 9 1259 1107 89 0 7 chr9 88466517 88466664 -35609508 + B1_Mus2 SINE Alu 2 147 0 9 1259 1210 68 0 0 chr9 88466889 88467037 -35609135 + B1_Mus1 SINE Alu 1 148 0 9 1259 207 0 0 0 chr9 88467039 88467062 -35609110 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 9 1259 4341 133 28 7 chr9 88467207 88467889 -35608283 + Lx4A LINE L1 6340 7035 -23 9 1259 1261 34 0 0 chr9 88468503 88468650 -35607522 - B1_Mm SINE Alu 0 147 1 9 1259 1139 69 7 0 chr9 88468736 88468881 -35607291 - B1_Mm SINE Alu 0 147 2 9 1259 227 93 0 23 chr9 88469045 88469089 -35607083 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 9 1259 1213 48 0 7 chr9 88469291 88469439 -35606733 + B1_Mm SINE Alu 1 147 0 9 1259 543 31 0 0 chr9 88469446 88469511 -35606661 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 9 1259 972 123 14 0 chr9 88469687 88469833 -35606339 + B1_Mus1 SINE Alu 1 148 0 9 1259 5052 161 112 21 chr9 88469873 88470846 -35605326 + Lx4B LINE L1 5930 6991 -67 9 1259 1696 232 46 94 chr9 88470865 88471009 -35605163 + Lx7 LINE L1 5780 5905 -1791 9 1259 3346 77 52 2 chr9 88471009 88471468 -35604704 + RLTR45 LTR ERVK 1 482 0 9 1259 1696 232 46 94 chr9 88471468 88471931 -35604241 + Lx7 LINE L1 5906 6358 -1338 9 1259 447 210 0 0 chr9 88472196 88472296 -35603876 - B1_Mus2 SINE Alu -5 142 43 9 1259 230 310 0 0 chr9 88472385 88472443 -35603729 + B4 SINE B4 88 145 -147 9 1259 448 212 123 9 chr9 88472394 88472508 -35603664 + B1_Mus1 SINE Alu 13 139 -9 9 1259 261 0 0 0 chr9 88472508 88472537 -35603635 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1259 210 37 0 0 chr9 88472550 88472577 -35603595 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 9 1259 2175 173 87 96 chr9 88472806 88473122 -35603050 + L1_Mur3 LINE L1 2643 2955 -2925 9 1259 1063 84 42 0 chr9 88473122 88473264 -35602908 - B1_Mus1 SINE Alu 0 148 1 9 1259 2175 173 87 96 chr9 88473264 88473335 -35602837 + L1_Mur3 LINE L1 2956 3000 -2880 9 1259 616 214 42 14 chr9 88473335 88473477 -35602695 + B1_Mus1 SINE Alu 1 146 -2 9 157 2175 173 87 96 chr9 88473477 88473721 -35602451 + L1_Mur3 LINE L1 3001 3269 -2611 9 1260 381 159 14 0 chr9 88473716 88473785 -35602387 + Lx4B LINE L1 6155 6224 -834 9 1260 2195 179 62 6 chr9 88473785 88474256 -35601916 - ORR1A3-int LTR MaLR -1466 497 1 1 1260 587 154 111 0 chr9 88474256 88474373 -35601799 - MT2B LTR ERVL 0 601 472 1 1260 252 317 114 51 chr9 88474412 88474588 -35601584 + MTEa LTR MaLR 39 225 -154 1 1260 400 250 8 65 chr9 88474684 88474808 -35601364 + MT2A LTR ERVL 3 119 -414 1 1260 235 254 30 0 chr9 88474831 88474898 -35601274 + MT2A LTR ERVL 109 177 -356 1 1260 1047 65 43 0 chr9 88475403 88475542 -35600630 + B1_Mm SINE Alu 2 146 -1 1 1260 234 62 0 0 chr9 88475543 88475575 -35600597 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1260 266 346 0 55 chr9 88475575 88475685 -35600487 - PB1D10 SINE Alu -13 104 1 1 1260 833 121 6 119 chr9 88476282 88476442 -35599730 - B1_Mus1 SINE Alu -6 142 1 1 1260 23 0 0 0 chr9 88477721 88477744 -35598428 + AT_rich Low_complexity Low_complexity 1 23 0 1 1260 351 0 0 0 chr9 88477827 88477866 -35598306 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1260 302 82 20 0 chr9 88478222 88478271 -35597901 + B1_Mus1 SINE Alu 1 50 -98 1 1260 1142 83 0 0 chr9 88478526 88478671 -35597501 - B1_Mus2 SINE Alu 0 147 3 1 1260 764 43 246 8 chr9 88479325 88479443 -35596729 + B1_Mus2 SINE Alu 2 147 0 1 1260 424 127 0 14 chr9 88480097 88480169 -35596003 + B2_Mm2 SINE B2 109 179 -16 1 1260 422 252 52 0 chr9 88480735 88480850 -35595322 - RSINE1 SINE B4 -29 136 16 1 1260 1428 61 11 0 chr9 88481099 88481279 -35594893 - B2_Mm1t SINE B2 -8 185 4 1 1260 877 70 0 30 chr9 88481563 88481695 -35594477 - B1_Mus2 SINE Alu -19 128 1 1 1260 619 227 16 0 chr9 88481697 88481825 -35594347 - B1_Mur3 SINE Alu -19 130 1 1 1260 1413 63 15 35 chr9 88481873 88482070 -35594102 + B2_Mm2 SINE B2 2 194 -1 1 1260 544 293 0 21 chr9 88482077 88482220 -35593952 + B1F2 SINE Alu 6 145 -4 1 1260 2252 123 9 0 chr9 88483388 88483712 -35592460 + ORR1A2 LTR MaLR 1 327 0 1 1260 1250 85 25 74 chr9 88483729 88483932 -35592240 + B2_Mm2 SINE B2 2 194 -1 1 1260 1281 97 26 21 chr9 88483997 88484187 -35591985 - B2_Mm1t SINE B2 -1 192 2 1 1260 207 0 0 0 chr9 88484455 88484478 -35591694 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1260 1279 92 32 11 chr9 88484738 88484925 -35591247 + B2_Mm1a SINE B2 1 191 -2 1 1260 286 304 29 10 chr9 88485495 88485598 -35590574 + Lx9 LINE L1 7065 7169 -475 1 1260 2188 251 103 35 chr9 88485954 88486070 -35590102 - Lx6 LINE L1 -216 7244 7122 1 1260 849 57 189 0 chr9 88486070 88486192 -35589980 + B1_Mus1 SINE Alu 2 146 -2 1 1260 2188 256 102 34 chr9 88486192 88486864 -35589308 - Lx6 LINE L1 -339 7121 6186 1 1260 180 0 0 0 chr9 88486864 88486884 -35589288 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 1260 1164 62 0 0 chr9 88486884 88487029 -35589143 - B1_Mus2 SINE Alu -2 145 1 1 1260 2904 170 92 6 chr9 88487029 88487790 -35588382 - Lx6 LINE L1 -865 6185 5253 1 1260 1116 78 0 0 chr9 88487791 88487933 -35588239 - B1_Mus1 SINE Alu -5 143 2 1 1260 638 182 56 35 chr9 88487967 88488109 -35588063 + B1_Mur2 SINE Alu 1 145 -4 1 1260 721 116 23 0 chr9 88488126 88488252 -35587920 - B2_Mm2 SINE B2 -48 168 27 1 1260 307 273 144 48 chr9 88488706 88488813 -35587359 + B3A SINE B2 10 131 -67 1 1260 4671 157 26 9 chr9 88488813 88489654 -35586518 + RLTR13A LTR ERVK 1 855 0 1 1260 307 273 144 48 chr9 88489654 88489692 -35586480 + B3A SINE B2 132 169 -29 1 1260 327 226 205 17 chr9 88490008 88490125 -35586047 + B1F SINE Alu 2 140 -9 1 1260 24 32 0 0 chr9 88490163 88490194 -35585978 + AT_rich Low_complexity Low_complexity 1 31 0 1 1260 325 174 238 11 chr9 88490481 88490586 -35585586 - B1_Mur3 SINE Alu -16 133 13 1 1260 277 207 164 0 chr9 88490717 88490833 -35585339 + L1M2 LINE L1 2855 2989 -3154 1 1260 905 62 5 244 chr9 88490918 88491111 -35585061 - B1_Mm SINE Alu 0 147 1 1 1260 247 303 55 0 chr9 88491245 88491354 -35584818 + L1M2 LINE L1 4810 4924 -1219 1 1260 469 188 104 0 chr9 88491444 88491540 -35584632 + B1_Mus1 SINE Alu 2 107 -41 1 1260 233 192 189 14 chr9 88491771 88491845 -35584327 + B1_Mur1 SINE Alu 62 148 -1 1 1260 26 30 0 0 chr9 88492584 88492617 -35583555 + AT_rich Low_complexity Low_complexity 1 33 0 1 1260 212 0 36 0 chr9 88493101 88493129 -35583043 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1260 22 0 0 0 chr9 88494461 88494483 -35581689 + GC_rich Low_complexity Low_complexity 1 22 0 1 1260 473 82 0 14 chr9 88495002 88495076 -35581096 - B2_Mm2 SINE B2 -122 73 1 1 1260 416 304 18 37 chr9 88495162 88495326 -35580846 + RSINE1 SINE B4 1 161 -4 1 1260 828 285 49 11 chr9 88495539 88495805 -35580367 - B4 SINE B4 -14 278 3 1 1260 606 28 0 0 chr9 88495839 88495911 -35580261 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 1 1260 303 28 0 0 chr9 88495914 88495950 -35580222 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1260 490 204 19 10 chr9 88495956 88496060 -35580112 - B1_Mur2 SINE Alu -11 138 34 1 1260 624 277 27 5 chr9 88496031 88496216 -35579956 - B4 SINE B4 -30 262 74 1 1260 1297 82 38 16 chr9 88496216 88496402 -35579770 - B2_Mm2 SINE B2 -4 191 2 1 1260 727 179 227 5 chr9 88496486 88496671 -35579501 + URR1A DNA MER1_type 1 226 0 1 1260 903 262 45 152 chr9 88496940 88497297 -35578875 + MTEb LTR MaLR 6 322 -57 1 1260 1180 62 0 0 chr9 88497297 88497443 -35578729 - B1_Mm SINE Alu 0 147 2 1 1260 903 262 45 152 chr9 88497443 88497481 -35578691 + MTEb LTR MaLR 323 359 -20 1 1260 195 129 0 0 chr9 88497481 88497512 -35578660 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1260 186 133 0 0 chr9 88497572 88497602 -35578570 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1260 558 50 0 36 chr9 88497639 88497722 -35578450 - B1_Mur4 SINE Alu 0 150 71 1 1260 519 209 0 0 chr9 88497999 88498114 -35578058 + (TA)n Simple_repeat Simple_repeat 2 116 0 1 1260 859 234 11 5 chr9 88498128 88498313 -35577859 - B3 SINE B2 -24 192 7 1 1260 230 248 186 10 chr9 88498640 88498742 -35577430 - MER3 DNA MER1_type -85 124 5 1 1260 250 67 44 0 chr9 88498988 88499033 -35577139 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1260 1503 145 191 3 chr9 88499271 88499575 -35576597 + RMER19A LTR ERVK 377 737 0 1 1260 225 197 149 40 chr9 88499576 88499650 -35576522 + RMER15 LTR ERVL 494 575 0 1 1260 1729 205 30 43 chr9 88500467 88500864 -35575308 - MTD LTR MaLR -8 411 20 1 1260 234 292 79 52 chr9 88501554 88501781 -35574391 - MURVY-LTR LTR ERV1 -47 472 199 2 1260 2418 152 26 36 chr9 88502482 88502981 -35573191 - L1_Mur2 LINE L1 -3714 2163 1670 3 1260 7738 90 8 21 chr9 88502951 88504116 -35572056 - L1_Mus4 LINE L1 0 6636 5488 4 1260 1197 75 7 0 chr9 88504143 88504289 -35571883 - B1_Mus1 SINE Alu 0 148 2 5 1260 31 0 0 0 chr9 88504502 88504533 -35571639 + AT_rich Low_complexity Low_complexity 1 31 0 6 1260 2096 139 17 9 chr9 88504569 88504918 -35571254 - ORR1B2 LTR MaLR 0 367 16 7 1260 189 0 0 0 chr9 88504922 88504943 -35571229 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 8 1260 1297 116 21 0 chr9 88504943 88505132 -35571040 - B2_Mm1t SINE B2 0 193 1 9 1260 202 56 27 27 chr9 88505549 88505586 -35570586 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1 1260 192 333 13 26 chr9 88505699 88505776 -35570396 - MER5A DNA MER1_type -1 188 113 1 1260 329 258 134 52 chr9 88505851 88506023 -35570149 + MER3 DNA MER1_type 15 200 -9 1 1260 1598 38 0 47 chr9 88506209 88506402 -35569770 - B2_Mm1t SINE B2 -9 184 1 1 1260 1518 57 0 17 chr9 88506402 88506581 -35569591 - B2_Mm1t SINE B2 -17 176 1 1 1260 1098 65 13 13 chr9 88506644 88506801 -35569371 - B2_Mm2 SINE B2 -1 194 38 1 1260 233 195 24 0 chr9 88506817 88506858 -35569314 + B4A SINE B4 4 45 -247 1 1260 625 212 20 179 chr9 88506882 88506983 -35569189 + B4 SINE B4 122 211 -81 1 1260 1239 68 0 0 chr9 88506983 88507129 -35569043 + B1_Mm SINE Alu 2 147 0 1 1260 378 57 0 0 chr9 88507137 88507190 -35568982 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 1260 625 212 20 179 chr9 88507190 88507203 -35568969 + B4 SINE B4 218 224 -68 1 1260 216 0 0 0 chr9 88507203 88507227 -35568945 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 1 1260 625 212 20 179 chr9 88507227 88507303 -35568869 + B4 SINE B4 225 290 -2 1 1260 238 278 0 0 chr9 88507683 88507737 -35568435 + ID2 SINE ID 3 56 -27 2 1260 463 343 57 0 chr9 88508116 88508256 -35567916 + B3A SINE B2 1 148 -50 2 1260 14438 174 38 23 chr9 88508549 88508792 -35567380 + Lx5 LINE L1 2955 3198 -2679 2 1260 4810 143 53 72 chr9 88508792 88509711 -35566461 + RLTR13D6 LTR ERVK 1 902 0 2 1260 14438 174 38 23 chr9 88509711 88509999 -35566173 + Lx5 LINE L1 3199 3479 -2398 2 1260 195 42 0 0 chr9 88509999 88510023 -35566149 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1260 14438 174 38 23 chr9 88510023 88511816 -35564356 + Lx5 LINE L1 3480 5307 -570 2 1260 1310 47 0 0 chr9 88511816 88511964 -35564208 - B1_Mus1 SINE Alu 0 148 1 2 1260 14438 222 60 26 chr9 88511964 88513602 -35562570 + Lx5 LINE L1 5308 7047 -3 2 1260 517 154 132 19 chr9 88513623 88513729 -35562443 - MTC LTR MaLR -303 118 1 2 1260 1939 209 35 5 chr9 88514471 88514871 -35561301 + MTC LTR MaLR 8 419 -2 2 1260 214 259 0 0 chr9 88515233 88515287 -35560885 + T-rich Low_complexity Low_complexity 5 58 0 2 1260 351 60 0 0 chr9 88516146 88516196 -35559976 + (CATA)n Simple_repeat Simple_repeat 4 53 0 2 1260 601 249 130 36 chr9 88517221 88517413 -35558759 - B3 SINE B2 -6 210 1 3 1260 1089 227 60 62 chr9 88517802 88518187 -35557985 + RLTR45-int LTR ERVK 3 386 -2928 3 1260 423 38 0 0 chr9 88518187 88518240 -35557932 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 3 1260 8381 154 101 83 chr9 88518240 88520396 -35555776 + RLTR45-int LTR ERVK 2100 4297 -2947 3 1260 4753 45 50 0 chr9 88520400 88520959 -35555213 + LTRIS_Mus LTR ERV1 1 587 0 3 1260 1635 191 59 25 chr9 88520959 88521427 -35554745 + MuRRS-int LTR ERV1 1 465 -4598 3 1260 26 0 0 0 chr9 88521445 88521471 -35554701 + GC_rich Low_complexity Low_complexity 1 26 0 3 1260 2149 139 68 3 chr9 88521475 88521829 -35554343 + MuRRS-int LTR ERV1 1091 1467 -3223 3 1260 6291 136 17 56 chr9 88521822 88523721 -35552451 + MuRRS-int LTR ERV1 3121 4656 -34 3 1260 296 131 16 32 chr9 88524042 88524057 -35552115 + MuRRS-int LTR ERV1 4960 4975 -88 3 1260 4475 57 4 9 chr9 88524057 88524603 -35551569 - L1Md_F2 LINE L1 -10 6572 6030 3 1260 347 62 0 0 chr9 88524603 88524651 -35551521 + MuRRS-int LTR ERV1 4643 4690 0 3 1260 5174 41 12 5 chr9 88524651 88525234 -35550938 + LTRIS_Mus LTR ERV1 1 587 0 3 1260 3438 140 19 95 chr9 88525234 88525969 -35550203 + ETnERV2-int LTR ERVK 3507 4094 -3312 3 1260 1169 89 0 0 chr9 88525969 88526115 -35550057 - B1_Mm SINE Alu 0 147 2 3 1260 2108 228 65 64 chr9 88526115 88526201 -35549971 + ETnERV2-int LTR ERVK 3099 3197 -2209 3 1260 1211 65 0 0 chr9 88526231 88526370 -35549802 - B1_Mm SINE Alu -7 140 2 4 1260 530 201 55 49 chr9 88526375 88526474 -35549698 + ETnERV2-int LTR ERVK 3923 4025 -1783 3 1260 1200 61 0 39 chr9 88526474 88526627 -35549545 - B1_Mm SINE Alu 0 147 1 4 1260 530 201 55 49 chr9 88526627 88526710 -35549462 + ETnERV2-int LTR ERVK 4026 4106 -1702 3 1260 5427 155 11 0 chr9 88526707 88527502 -35548670 + ETnERV2-int LTR ERVK 4419 5222 -2184 3 1260 235 176 28 56 chr9 88527502 88527574 -35548598 + B3 SINE B2 147 216 0 4 1260 327 329 132 45 chr9 88527687 88527907 -35548265 - B4A SINE B4 -20 272 34 4 1260 876 159 7 14 chr9 88527933 88528080 -35548092 + B1_Mus1 SINE Alu 2 147 -1 4 1260 184 0 30 61 chr9 88528081 88528114 -35548058 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 4 1260 31 82 0 0 chr9 88528229 88528302 -35547870 + AT_rich Low_complexity Low_complexity 1 73 0 4 1260 836 167 43 7 chr9 88528395 88528534 -35547638 - B1_Mus2 SINE Alu -2 145 2 4 1260 685 89 32 8 chr9 88528542 88528667 -35547505 + (TC)n Simple_repeat Simple_repeat 1 128 0 4 1260 281 325 121 8 chr9 88529422 88529546 -35546626 + MTE2b LTR MaLR 219 356 -23 4 1260 225 318 9 70 chr9 88530910 88531025 -35545147 - MTEb LTR MaLR -14 365 258 5 1260 345 383 21 16 chr9 88531503 88531694 -35544478 - ID_B1 SINE B4 -31 193 2 5 1260 286 341 12 24 chr9 88536064 88536148 -35540024 - RSINE1 SINE B4 -44 121 39 5 1260 1596 270 104 58 chr9 88536576 88537613 -35538559 + L1_Rod LINE L1 4139 5223 -624 5 1260 292 311 202 20 chr9 88537664 88537867 -35538305 + Lx9 LINE L1 7207 7446 -198 5 1260 233 152 0 21 chr9 88538414 88538461 -35537711 + A-rich Low_complexity Low_complexity 2 47 0 5 1260 1395 106 5 0 chr9 88538463 88538652 -35537520 + B2_Mm1t SINE B2 3 192 -1 5 1260 1075 191 90 0 chr9 88538654 88538932 -35537240 + L1_Mur2 LINE L1 574 876 -5836 5 1260 276 338 102 39 chr9 88539070 88539276 -35536896 - MER2 DNA MER2_type -2 343 125 5 1260 314 331 23 39 chr9 88539507 88539636 -35536536 + RSINE1 SINE B4 8 134 -31 5 1260 249 119 0 0 chr9 88540909 88540951 -35535221 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 1260 235 378 41 0 chr9 88542438 88542536 -35533636 + MLT2E LTR ERVL 128 229 -399 6 1260 369 115 0 37 chr9 88542822 88542903 -35533269 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 1260 412 348 61 77 chr9 88543387 88543698 -35532474 - MTE2b LTR MaLR -12 367 62 6 1260 526 262 57 16 chr9 88545251 88545375 -35530797 + ETnERV2-int LTR ERVK 7074 7202 -204 6 1260 329 254 58 22 chr9 88545931 88546068 -35530104 + RMER16-int LTR ERVK 169 310 -6934 6 1260 1629 180 101 30 chr9 88546261 88546627 -35529545 + RMER16-int LTR ERVK 241 632 -4774 6 1260 36726 61 1 18 chr9 88546627 88552258 -35523914 + L1Md_A LINE L1 101 5586 -297 6 1260 9112 28 0 0 chr9 88552258 88553254 -35522918 + L1Md_A LINE L1 5587 6582 0 6 1260 520 268 169 19 chr9 88553272 88553485 -35522687 + RLTR19-int LTR ERVK 444 688 -5449 6 1260 627 128 128 0 chr9 88553472 88553581 -35522591 + RLTR19-int LTR ERVK 938 1060 -5077 6 1260 773 164 0 0 chr9 88553694 88553816 -35522356 + ETnERV2-int LTR ERVK 2632 2753 -4653 6 1260 6034 170 66 92 chr9 88553851 88555508 -35520664 + RLTR45-int LTR ERVK 4296 5910 -1334 6 1260 35646 59 2 1 chr9 88555667 88560907 -35515265 - L1Md_F2 LINE L1 0 6582 1336 7 1260 422 292 14 7 chr9 88560983 88561121 -35515051 - Charlie1a DNA MER1_type -497 958 820 7 1260 42143 4 0 0 chr9 88561129 88567495 -35508677 - L1Md_A LINE L1 0 6582 216 7 1260 5534 127 2 77 chr9 88567509 88568631 -35507541 - L1Md_F LINE L1 -5380 1344 306 7 1260 783 145 142 22 chr9 88568632 88568816 -35507356 + RNERVK23-int LTR ERVK 5894 6072 -1172 7 1260 873 266 4 0 chr9 88568805 88569082 -35507090 + RNERVK23-int LTR ERVK 7506 7748 -469 7 1260 4261 169 25 7 chr9 88569196 88569888 -35506284 + ETnERV2-int LTR ERVK 6499 7202 -204 7 1260 2782 122 15 0 chr9 88570552 88570961 -35505211 + Lx2 LINE L1 6494 6908 -89 7 1260 24 77 0 0 chr9 88570966 88571018 -35505154 + AT_rich Low_complexity Low_complexity 1 52 0 7 1260 255 307 115 38 chr9 88571126 88571309 -35504863 + B4A SINE B4 15 211 -81 7 1260 4429 211 29 28 chr9 88571404 88572303 -35503869 - Lx5 LINE L1 0 7050 6151 7 1260 8719 191 22 36 chr9 88572890 88574448 -35501724 - Lx5 LINE L1 -900 6150 4594 7 1260 1094 89 7 0 chr9 88574448 88574594 -35501578 + B1_Mus1 SINE Alu 2 148 0 8 1260 8719 199 17 50 chr9 88574594 88575272 -35500900 - Lx5 LINE L1 -1293 4593 3975 7 1260 233 293 110 0 chr9 88575304 88575386 -35500786 + MER5A1 DNA MER1_type 2 92 -74 8 1260 301 372 10 31 chr9 88576430 88576624 -35499548 + Charlie7 DNA MER1_type 278 467 -2145 8 1260 298 361 48 5 chr9 88576912 88577118 -35499054 + Charlie7 DNA MER1_type 812 1026 -1586 8 1260 221 227 0 0 chr9 88577154 88577198 -35498974 + B4A SINE B4 2 45 -247 8 1260 733 212 24 24 chr9 88577222 88577391 -35498781 + B4 SINE B4 122 290 -2 8 1260 500 0 17 0 chr9 88577405 88577465 -35498707 + (GA)n Simple_repeat Simple_repeat 2 62 0 8 1260 232 344 0 0 chr9 88577831 88577895 -35498277 + ID4 SINE ID 3 66 -17 8 1260 232 176 32 32 chr9 88577905 88577999 -35498173 + GA-rich Low_complexity Low_complexity 2 95 0 8 1260 599 154 89 8 chr9 88578183 88578307 -35497865 + B1_Mur1 SINE Alu 9 142 -7 8 1260 267 214 0 0 chr9 88578307 88578377 -35497795 + GA-rich Low_complexity Low_complexity 1 70 0 8 1260 557 259 21 7 chr9 88578398 88578507 -35497665 - RCHARR1 DNA MER1_type -797 177 67 8 1260 192 40 0 0 chr9 88578507 88578532 -35497640 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1260 557 259 21 7 chr9 88578532 88578562 -35497610 - RCHARR1 DNA MER1_type -908 66 37 8 1260 435 274 44 78 chr9 88578689 88578895 -35497277 + B3 SINE B2 4 202 -14 9 1260 1236 244 110 8 chr9 88578941 88579313 -35496859 + Lx8 LINE L1 6829 7238 -235 9 1260 358 277 34 67 chr9 88579929 88580107 -35496065 - MTEa LTR MaLR -4 375 204 9 1260 225 301 88 9 chr9 88580129 88580243 -35495929 - MTEa LTR MaLR -249 129 7 9 1260 900 276 31 5 chr9 88580533 88580755 -35495417 - MTEb LTR MaLR -151 228 1 9 1260 23 0 0 0 chr9 88581116 88581139 -35495033 + AT_rich Low_complexity Low_complexity 1 23 0 9 1260 8923 3 0 0 chr9 88582300 88583267 -35492905 + L1Md_A LINE L1 5616 6582 0 9 1260 22 0 0 0 chr9 88583446 88583468 -35492704 + AT_rich Low_complexity Low_complexity 1 22 0 9 1260 1382 285 59 38 chr9 88585209 88585786 -35490386 + L1MB1 LINE L1 5580 6168 0 9 1260 292 250 0 13 chr9 88586081 88586158 -35490014 - Tigger10 DNA Tigger -553 1290 1215 9 1260 680 64 11 0 chr9 88586675 88586769 -35489403 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1260 4133 54 25 0 chr9 88587579 88588099 -35488073 - L1Md_F3 LINE L1 -1 6583 6051 1 1260 3994 38 2 0 chr9 88588099 88588724 -35487448 + L1Md_F3 LINE L1 5429 6054 -530 1 1260 265 303 132 44 chr9 88589032 88589146 -35487026 - MER58A DNA MER1_type -96 128 5 1 1260 702 284 43 0 chr9 88590103 88590311 -35485861 + ID_B1 SINE B4 2 218 -6 1 1260 434 61 15 0 chr9 88590326 88590392 -35485780 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 1 1260 982 255 27 30 chr9 88591210 88591546 -35484626 - RMER5 LTR ERV1 -5 529 195 1 1260 260 135 56 37 chr9 88592207 88592261 -35483911 + RSINE1 SINE B4 76 130 -35 1 1260 423 0 0 0 chr9 88592262 88592309 -35483863 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1260 196 376 32 0 chr9 88594030 88594123 -35482049 - MIRb SINE MIR -92 176 81 1 1260 399 274 124 38 chr9 88594997 88595206 -35480966 + RMER15 LTR ERVL 349 575 0 1 1260 406 125 0 24 chr9 88595231 88595313 -35480859 + (TATG)n Simple_repeat Simple_repeat 4 83 0 1 1260 380 111 0 16 chr9 88595624 88595688 -35480484 + (TATG)n Simple_repeat Simple_repeat 1 63 0 1 1260 420 231 94 40 chr9 88595782 88595931 -35480241 - B4A SINE B4 -135 157 1 1 1260 409 200 19 9 chr9 88596461 88596567 -35479605 + GA-rich Low_complexity Low_complexity 2 108 0 1 1260 268 83 0 0 chr9 88596735 88596771 -35479401 + U2 snRNA snRNA 1 36 -152 1 1260 340 282 151 11 chr9 88596775 88596954 -35479218 + L1MB2 LINE L1 5960 6163 -8 1 1260 1129 177 22 9 chr9 88597097 88597319 -35478853 + URR1B DNA MER1_type 1 225 0 1 1260 217 387 43 0 chr9 88599168 88599261 -35476911 + B1F1 SINE Alu 1 97 -52 1 1260 564 271 111 22 chr9 88599667 88599848 -35476324 - B3A SINE B2 -1 197 1 1 1260 21 57 0 0 chr9 88600034 88600069 -35476103 + AT_rich Low_complexity Low_complexity 1 35 0 1 1260 1342 155 0 5 chr9 88600819 88601039 -35475133 - URR1B DNA MER1_type -5 220 2 1 1260 26 30 0 0 chr9 88601164 88601197 -35474975 + AT_rich Low_complexity Low_complexity 1 33 0 1 1260 1236 35 0 0 chr9 88601311 88601454 -35474718 + B1_Mus2 SINE Alu 5 147 0 1 1260 600 289 14 52 chr9 88602045 88602257 -35473915 + ID_B1 SINE B4 19 222 -2 1 1260 415 230 10 80 chr9 88602408 88602542 -35473630 - B1F1 SINE Alu 0 127 1 1 1260 319 212 83 113 chr9 88602705 88602838 -35473334 + RLTR25B LTR ERVK 381 509 -519 1 1260 852 34 0 33 chr9 88602761 88602881 -35473291 + B1_Mus2 SINE Alu 32 147 0 1 1260 234 0 0 0 chr9 88602889 88602915 -35473257 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1260 278 300 18 18 chr9 88603524 88603636 -35472536 + PB1D10 SINE Alu 2 113 -4 1 1260 602 261 65 37 chr9 88603645 88603860 -35472312 + ID_B1 SINE B4 3 223 -1 1 1260 335 93 37 0 chr9 88604292 88604346 -35471826 + ID_B1 SINE B4 150 205 -19 1 1260 316 306 88 7 chr9 88604350 88604498 -35471674 + MIR3 SINE MIR 3 162 -46 1 1261 21 0 0 0 chr9 88605671 88605692 -35470480 + AT_rich Low_complexity Low_complexity 1 21 0 1 1261 453 293 43 7 chr9 88606128 88606269 -35469903 - RSINE1 SINE B4 -18 147 2 1 1261 459 253 200 55 chr9 88607667 88607922 -35468250 + B4A SINE B4 1 292 0 1 1261 983 156 41 25 chr9 88608255 88608452 -35467720 + URR1A DNA MER1_type 27 226 0 1 1261 269 258 15 0 chr9 88608509 88608575 -35467597 + PB1D10 SINE Alu 41 107 -10 1 1261 288 0 0 0 chr9 88608578 88608610 -35467562 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1261 21 57 0 0 chr9 88608699 88608734 -35467438 + AT_rich Low_complexity Low_complexity 1 35 0 1 1261 370 312 80 45 chr9 88608874 88609075 -35467097 + MLT1K LTR MaLR 146 353 -242 1 1261 350 211 98 27 chr9 88610045 88610157 -35466015 + PB1D9 SINE Alu 1 120 0 1 1261 444 366 89 41 chr9 88612056 88612472 -35463700 + HAL1 LINE L1 826 1261 -1246 1 1261 863 229 23 69 chr9 88612527 88612743 -35463429 + RLTR18B LTR ERVK 72 277 -235 1 1261 1260 259 93 11 chr9 88612739 88613095 -35463077 + RLTR18B LTR ERVK 121 505 -7 1 1261 828 174 145 40 chr9 88613101 88613195 -35462977 + ORR1C2 LTR MaLR 134 234 -150 1 1261 243 0 0 0 chr9 88613195 88613222 -35462950 + (CCTG)n Simple_repeat Simple_repeat 4 30 0 1 1261 828 174 145 40 chr9 88613222 88613354 -35462818 + ORR1C2 LTR MaLR 235 384 0 1 1261 882 239 14 32 chr9 88613502 88613718 -35462454 + B3 SINE B2 3 214 -2 1 1261 279 0 0 0 chr9 88614164 88614195 -35461977 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1261 1693 11 0 0 chr9 88615328 88615504 -35460668 - B2_Mm1a SINE B2 -15 178 3 1 1261 291 318 28 37 chr9 88615516 88615656 -35460516 + B4A SINE B4 2 143 -149 1 1261 392 305 70 7 chr9 88615780 88615922 -35460250 + MER5A1 DNA MER1_type 14 164 -2 1 1261 348 24 0 0 chr9 88616025 88616066 -35460106 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1 1261 252 0 0 0 chr9 88616421 88616449 -35459723 + (GAGAA)n Simple_repeat Simple_repeat 3 30 0 1 1261 344 264 34 68 chr9 88616449 88616656 -35459516 - RMER17C LTR ERVK -166 244 45 1 1261 330 291 0 0 chr9 88616711 88616790 -35459382 + PB1D10 SINE Alu 10 88 -29 1 1261 406 216 19 58 chr9 88616827 88616930 -35459242 + ORR1E LTR MaLR 7 105 -254 1 1261 455 311 16 16 chr9 88617102 88617226 -35458946 + ID_B1 SINE B4 43 166 -58 1 1261 185 122 25 75 chr9 88617462 88617542 -35458630 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 1 1261 336 320 72 65 chr9 88618493 88618574 -35457598 - MER33 DNA MER1_type -1 323 252 1 1261 1984 155 91 11 chr9 88618574 88618753 -35457419 - ORR1C2 LTR MaLR -2 382 175 1 1261 339 78 0 0 chr9 88618753 88618804 -35457368 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1261 1984 155 91 11 chr9 88618804 88618976 -35457196 - ORR1C2 LTR MaLR -210 174 4 1 1261 336 320 72 65 chr9 88618976 88619185 -35456987 - MER33 DNA MER1_type -73 251 31 1 1261 223 243 84 14 chr9 88619552 88619623 -35456549 - MIRc SINE MIR -110 158 83 1 1261 342 302 101 0 chr9 88619627 88619756 -35456416 + B1F SINE Alu 7 148 -1 1 1261 820 292 38 0 chr9 88619864 88620076 -35456096 - ID_B1 SINE B4 0 224 5 1 1261 435 38 0 0 chr9 88620699 88620752 -35455420 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1 1261 346 297 108 0 chr9 88621151 88621262 -35454910 + MLT1A1 LTR MaLR 1 123 -285 1 1261 297 0 0 0 chr9 88621636 88621669 -35454503 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1261 203 327 35 61 chr9 88622169 88622283 -35453889 - MIRb SINE MIR -107 161 51 1 1261 212 404 29 29 chr9 88622302 88622404 -35453768 - L2b LINE L2 -11 3364 3263 1 1261 276 238 13 84 chr9 88622566 88622659 -35453513 - PB1 SINE Alu -30 97 21 1 1261 272 234 0 49 chr9 88622859 88622940 -35453232 + GA-rich Low_complexity Low_complexity 6 82 0 1 1261 290 352 59 25 chr9 88623150 88623386 -35452786 - MIR SINE MIR -16 246 3 1 1261 315 0 0 0 chr9 88623866 88623901 -35452271 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1261 540 0 0 0 chr9 88623901 88623960 -35452212 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1261 266 341 0 66 chr9 88625161 88625252 -35450920 - ID_B1 SINE B4 -18 206 122 1 1261 1400 89 0 50 chr9 88625733 88625935 -35450237 + B2_Mm2 SINE B2 2 193 -2 1 1261 21 0 0 0 chr9 88626102 88626123 -35450049 + AT_rich Low_complexity Low_complexity 1 21 0 1 1261 588 257 84 45 chr9 88627036 88627215 -35448957 - B3 SINE B2 -29 187 2 1 1261 247 365 99 16 chr9 88628075 88628398 -35447774 + LTR16B2 LTR ERVL 52 401 -61 1 1261 432 0 0 0 chr9 88629297 88629345 -35446827 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 1 1261 645 282 64 158 chr9 88630493 88630948 -35445224 - RMER10A LTR ERVL -19 423 12 1 1261 444 37 0 0 chr9 88631320 88631374 -35444798 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 1 1261 4508 153 10 23 chr9 88631530 88632346 -35443826 + RLTR22_Mur LTR ERVK 1 805 -1043 1 1261 9082 9 0 0 chr9 88632395 88633582 -35442590 - L1Md_A LINE L1 0 6582 5396 1 1261 1659 47 0 20 chr9 88633627 88633822 -35442350 - B2_Mm1t SINE B2 -2 191 1 1 1261 7345 78 13 5 chr9 88633946 88635199 -35440973 - L1_Mus1 LINE L1 0 6567 5306 1 1261 474 297 61 83 chr9 88635347 88635575 -35440597 + RMER12 LTR ERVK 1100 1322 0 1 1261 22 0 0 0 chr9 88635603 88635625 -35440547 + AT_rich Low_complexity Low_complexity 1 22 0 1 1261 231 208 25 25 chr9 88635804 88635883 -35440289 + A-rich Low_complexity Low_complexity 1 79 0 1 1261 399 119 34 0 chr9 88635927 88635986 -35440186 - Lx7 LINE L1 -584 7112 7052 1 1261 216 320 76 19 chr9 88636395 88636500 -35439672 + MIRm SINE MIR 160 270 -6 1 1261 378 0 0 0 chr9 88636967 88637009 -35439163 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1 1261 1831 316 52 79 chr9 88637375 88638642 -35437530 - L1_Mur3 LINE L1 -12 5868 4597 1 1261 4265 75 88 7 chr9 88638642 88639218 -35436954 + L1_Mus4 LINE L1 6013 6635 -1 1 1261 1831 316 52 79 chr9 88639218 88639467 -35436705 - L1_Mur3 LINE L1 -1284 4596 4393 1 1261 429 135 83 0 chr9 88639483 88639579 -35436593 - L1Md_F3 LINE L1 -3 6581 6478 1 1261 1904 94 8 0 chr9 88639588 88639844 -35436328 - L1_Mus2 LINE L1 -272 6294 6037 1 1261 337 254 237 5 chr9 88639864 88640050 -35436122 - L1_Mur3 LINE L1 -1521 4359 4131 1 1261 21 36 0 0 chr9 88641808 88641836 -35434336 + AT_rich Low_complexity Low_complexity 1 28 0 1 1261 1849 231 28 40 chr9 88641869 88642365 -35433807 + RLTR11A2 LTR ERVK 17 506 -21 1 1261 1105 230 22 4 chr9 88642425 88642656 -35433516 - ORR1D1 LTR MaLR 0 374 140 1 1261 633 27 0 0 chr9 88643098 88643173 -35432999 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 1 1261 1066 109 0 0 chr9 88643173 88643311 -35432861 - B1_Mus2 SINE Alu -9 138 1 2 1261 2790 23 2 255 chr9 88643500 88644022 -35432150 - RLTR10 LTR ERVK 0 390 1 2 1261 17374 19 3 3 chr9 88644024 88645969 -35430203 - RLTR10-int LTR ERVK -3 1984 41 2 1261 2709 31 2 252 chr9 88645979 88646499 -35429673 - RLTR10 LTR ERVK 0 390 1 2 1261 326 277 107 8 chr9 88650216 88650268 -35425904 - B1_Mur3 SINE Alu -1 148 86 2 1261 567 85 0 0 chr9 88650268 88650350 -35425822 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2 1261 326 277 107 8 chr9 88650350 88650428 -35425744 - B1_Mur3 SINE Alu -64 85 5 2 1261 471 35 0 0 chr9 88651430 88651487 -35424685 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1261 196 30 61 0 chr9 88651865 88651898 -35424274 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1261 258 301 158 55 chr9 88652889 88653072 -35423100 - MTEa LTR MaLR -162 217 16 2 1261 357 319 26 0 chr9 88654494 88654610 -35421562 + RSINE1 SINE B4 2 120 -45 2 1261 425 299 19 70 chr9 88654845 88655003 -35421169 - RLTR33 LTR ERVK -85 593 444 2 1261 461 58 14 0 chr9 88656264 88656333 -35419839 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1261 288 77 0 0 chr9 88656333 88656372 -35419800 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1261 189 0 0 0 chr9 88656842 88656863 -35419309 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1261 263 289 0 50 chr9 88656869 88656949 -35419223 - B1_Mur3 SINE Alu -69 80 5 2 1261 299 372 65 33 chr9 88657175 88657389 -35418783 + ID_B1 SINE B4 2 222 -2 2 1261 204 40 0 0 chr9 88658262 88658287 -35417885 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1261 383 357 63 17 chr9 88659923 88660097 -35416075 - MTE2b LTR MaLR -162 217 36 2 1261 201 129 0 0 chr9 88662105 88662136 -35414036 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1261 26 50 0 0 chr9 88662881 88662921 -35413251 + AT_rich Low_complexity Low_complexity 1 40 0 2 1261 527 310 108 30 chr9 88662949 88663245 -35412927 - Lx8 LINE L1 -58 7415 7097 2 1261 404 359 13 13 chr9 88663455 88663613 -35412559 + ID_B1 SINE B4 2 159 -65 2 1261 2779 248 149 51 chr9 88663615 88664910 -35411262 - RMER1A Other Other 0 1030 1 2 1261 534 281 58 31 chr9 88665491 88665682 -35410490 + Lx8 LINE L1 7249 7444 -29 2 1261 22 0 0 0 chr9 88665698 88665720 -35410452 + AT_rich Low_complexity Low_complexity 1 22 0 2 1261 2693 106 26 33 chr9 88667554 88667945 -35408227 - Lx3_Mus LINE L1 -5 7004 6617 2 1261 9177 67 2 1 chr9 88667947 88669137 -35407035 - L1_Mur1 LINE L1 -770 5116 3926 2 1261 205 89 0 100 chr9 88669205 88669255 -35406917 + A-rich Low_complexity Low_complexity 4 48 0 2 1261 2190 182 23 8 chr9 88669262 88669650 -35406522 + ORR1B1 LTR MaLR 1 394 0 2 1261 1882 118 43 64 chr9 88670249 88670575 -35405597 + ORR1A2 LTR MaLR 1 319 -8 2 1261 192 185 0 0 chr9 88672395 88672449 -35403723 + T-rich Low_complexity Low_complexity 1 54 0 2 1261 306 268 9 18 chr9 88674244 88674358 -35401814 + (TA)n Simple_repeat Simple_repeat 1 113 0 2 1261 6470 45 13 0 chr9 88674897 88675644 -35400528 + L1Md_F3 LINE L1 5828 6584 0 2 1261 351 350 59 97 chr9 88675645 88675679 -35400493 - MTE2b LTR MaLR -41 338 303 2 1261 2646 79 11 29 chr9 88675679 88676057 -35400115 - L1Md_F2 LINE L1 0 6582 6212 2 1261 351 350 59 97 chr9 88676057 88676310 -35399862 - MTE2b LTR MaLR -77 302 62 2 1261 2726 136 16 18 chr9 88677315 88677785 -35398387 + Lx2 LINE L1 6352 6908 -89 2 1261 312 304 128 33 chr9 88677915 88678095 -35398077 + B4A SINE B4 15 211 -81 2 1261 4378 191 34 44 chr9 88678176 88679082 -35397090 - Lx5 LINE L1 -3 7047 6151 2 1261 11518 157 17 9 chr9 88679248 88681499 -35394673 - Lx5 LINE L1 -877 6173 3900 2 1261 5288 175 61 14 chr9 88681527 88682848 -35393324 - Lx5 LINE L1 -3542 2335 962 2 1261 1374 116 5 0 chr9 88682848 88683038 -35393134 - B2_Mm1t SINE B2 -1 192 2 2 1261 1227 252 129 6 chr9 88683038 88683105 -35393067 - Lx5 LINE L1 -6125 961 886 2 1261 276 301 63 31 chr9 88683678 88683805 -35392367 - Lx9 LINE L1 -198 7446 7316 2 1261 1703 42 5 0 chr9 88683942 88684133 -35392039 - B2_Mm1t SINE B2 0 193 2 2 1261 1579 279 89 69 chr9 88684157 88684411 -35391761 - L1_Rod LINE L1 -621 5226 4953 2 1261 4453 41 10 6 chr9 88684411 88684926 -35391246 + L1Md_F3 LINE L1 6068 6584 0 2 1261 1579 279 89 69 chr9 88684926 88685737 -35390435 - L1_Rod LINE L1 -895 4952 4140 2 1261 274 341 12 24 chr9 88686164 88686248 -35389924 + RSINE1 SINE B4 39 121 -44 2 1261 369 0 0 0 chr9 88687402 88687443 -35388729 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2 1261 3974 49 2 18 chr9 88687446 88687942 -35388230 - L1Md_F2 LINE L1 -25 6557 6070 2 1261 407 360 32 41 chr9 88689922 88690142 -35386030 + ID_B1 SINE B4 2 219 -5 2 1261 243 347 33 59 chr9 88690335 88690488 -35385684 + MTEb LTR MaLR 217 365 -14 2 1261 670 86 17 0 chr9 88692731 88692847 -35383325 + (GA)n Simple_repeat Simple_repeat 1 118 0 2 1261 827 160 61 0 chr9 88692860 88692991 -35383181 + B1_Mur3 SINE Alu 2 140 -9 2 1261 249 33 0 0 chr9 88694036 88694066 -35382106 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1261 306 0 0 0 chr9 88694981 88695015 -35381157 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1261 593 27 0 13 chr9 88697540 88697616 -35378556 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1261 187 253 155 21 chr9 88698599 88698696 -35377476 + L3 LINE CR1 3548 3657 -832 2 1261 724 254 28 42 chr9 88698882 88699096 -35377076 + B3 SINE B2 1 211 -5 2 1261 264 100 0 0 chr9 88700148 88700188 -35375984 + (TATG)n Simple_repeat Simple_repeat 4 43 0 2 1261 214 259 0 0 chr9 88701060 88701114 -35375058 + A-rich Low_complexity Low_complexity 5 58 0 2 1261 1865 209 38 5 chr9 88701476 88701875 -35374297 - MTC LTR MaLR -2 419 8 2 1261 504 135 151 19 chr9 88702619 88702725 -35373447 + MTC LTR MaLR 1 120 -301 2 1261 8307 193 60 25 chr9 88702745 88705530 -35370642 - Lx5 LINE L1 -3 7047 4124 2 1261 4627 16 2 12 chr9 88705530 88706028 -35370144 - MT2_Mm LTR ERVL 0 493 1 2 1261 322 0 0 0 chr9 88706028 88706066 -35370106 - MERVL-int LTR ERVL 0 5485 5448 2 1261 367 167 46 35 chr9 88706066 88706153 -35370019 - ORR1A3-int LTR MaLR -1323 640 553 2 1261 41137 17 14 0 chr9 88706153 88711440 -35364732 - MERVL-int LTR ERVL -125 5360 1 2 1261 4641 14 2 12 chr9 88711440 88711938 -35364234 - MT2_Mm LTR ERVL 0 493 1 2 1261 12888 178 39 45 chr9 88711938 88712243 -35363929 - Lx5 LINE L1 -1749 4128 3851 2 1261 1093 116 0 0 chr9 88712243 88712389 -35363783 - B1_Mus2 SINE Alu 0 147 2 2 1261 12888 178 39 45 chr9 88712389 88712762 -35363410 - Lx5 LINE L1 -2027 3850 3481 2 1261 207 0 0 0 chr9 88712762 88712785 -35363387 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1261 12888 178 39 45 chr9 88712785 88713067 -35363105 - Lx5 LINE L1 -2397 3480 3201 2 1261 5174 144 16 81 chr9 88713067 88714032 -35362140 - RLTR13D6 LTR ERVK 0 902 1 2 1261 12888 178 39 45 chr9 88714032 88715142 -35361030 - Lx5 LINE L1 -2677 3200 2062 2 1261 324 0 0 0 chr9 88715142 88715178 -35360994 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1261 12888 176 33 38 chr9 88715178 88716064 -35360108 - Lx5 LINE L1 -3816 2061 1188 2 1261 634 172 47 0 chr9 88716065 88716193 -35359979 - RLTR45 LTR ERVK 0 482 349 2 1261 2379 87 65 20 chr9 88716196 88716547 -35359625 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1261 55824 30 9 2 chr9 88716557 88722959 -35353213 + IAPEz-int LTR ERVK 34 6478 -3 2 1261 2240 87 65 20 chr9 88722963 88723314 -35352858 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1261 1757 122 46 40 chr9 88723314 88723713 -35352459 - RLTR45 LTR ERVK -131 351 1 2 1261 1051 181 9 31 chr9 88723713 88723941 -35352231 - Lx5 LINE L1 -5970 1116 894 2 1261 433 211 56 28 chr9 88724609 88724716 -35351456 + PB1D10 SINE Alu 8 117 0 2 1261 441 333 50 0 chr9 88725788 88725929 -35350243 - B3A SINE B2 -50 148 1 2 1261 218 278 0 0 chr9 88726308 88726362 -35349810 - ID2 SINE ID -27 56 3 2 1261 243 0 0 0 chr9 88726709 88726736 -35349436 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1261 692 219 23 41 chr9 88726773 88726944 -35349228 - B4 SINE B4 -3 289 122 2 1261 983 57 21 7 chr9 88727025 88727167 -35349005 + B2_Mm2 SINE B2 38 181 -14 2 1261 1266 41 0 0 chr9 88727179 88727326 -35348846 - B1_Mm SINE Alu 0 147 1 2 1261 1186 48 7 0 chr9 88727406 88727551 -35348621 - B1_Mm SINE Alu 0 147 2 2 1261 216 86 0 0 chr9 88727718 88727753 -35348419 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 2 1261 1186 68 0 0 chr9 88727954 88728101 -35348071 + B1_Mm SINE Alu 1 147 0 2 1261 270 0 0 0 chr9 88728108 88728138 -35348034 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2 1261 607 139 0 32 chr9 88728140 88728266 -35347906 + GA-rich Low_complexity Low_complexity 4 125 0 2 1261 543 148 287 0 chr9 88728433 88728548 -35347624 + B1_Mus1 SINE Alu 1 148 0 2 1261 5084 157 111 20 chr9 88728603 88729570 -35346602 + Lx4B LINE L1 5937 6991 -67 2 1261 1735 213 60 89 chr9 88729589 88730186 -35345986 + Lx7 LINE L1 5780 6359 -1337 2 1261 439 220 0 0 chr9 88730452 88730552 -35345620 - B1_Mus2 SINE Alu -5 142 43 2 1261 230 310 0 0 chr9 88730641 88730699 -35345473 + B4 SINE B4 88 145 -147 2 1261 472 200 124 8 chr9 88730650 88730771 -35345401 + B1_Mus1 SINE Alu 13 147 -1 2 1261 282 29 0 0 chr9 88730790 88730825 -35345347 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1261 2197 181 90 76 chr9 88731042 88731363 -35344809 + L1_Mur3 LINE L1 2639 2955 -2925 2 1261 1170 81 0 0 chr9 88731363 88731511 -35344661 - B1_Mus1 SINE Alu 0 148 1 2 1261 2197 181 90 76 chr9 88731511 88731559 -35344613 + L1_Mur3 LINE L1 2956 2991 -2889 2 1261 270 0 0 0 chr9 88731559 88731589 -35344583 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1261 638 225 42 0 chr9 88731598 88731740 -35344432 + B1_Mus1 SINE Alu 1 148 0 2 1261 2197 181 90 76 chr9 88731740 88731981 -35344191 + L1_Mur3 LINE L1 3001 3269 -2611 2 1261 369 152 15 0 chr9 88731976 88732042 -35344130 + Lx4B LINE L1 6155 6221 -837 2 1261 2087 190 62 6 chr9 88732045 88732516 -35343656 - ORR1A3-int LTR MaLR -1466 497 1 2 1261 618 137 111 0 chr9 88732516 88732633 -35343539 - MT2B LTR ERVL 0 601 472 2 1261 260 311 114 51 chr9 88732672 88732848 -35343324 + MTEa LTR MaLR 39 225 -154 2 1261 431 239 8 64 chr9 88732944 88733069 -35343103 + MT2A LTR ERVL 3 120 -413 2 1261 235 254 30 0 chr9 88733091 88733158 -35343014 + MT2A LTR ERVL 109 177 -356 2 1261 1069 58 43 0 chr9 88733657 88733796 -35342376 + B1_Mm SINE Alu 2 146 -1 2 1261 309 118 0 0 chr9 88733797 88733848 -35342324 + (A)n Simple_repeat Simple_repeat 1 51 0 2 1261 268 346 0 55 chr9 88733848 88733958 -35342214 - PB1D10 SINE Alu -13 104 1 2 1261 981 85 7 60 chr9 88734558 88734708 -35341464 - B1_Mus1 SINE Alu -6 142 1 2 1262 2607 97 22 157 chr9 88735873 88736422 -35339750 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1262 243 0 0 0 chr9 88736640 88736667 -35339505 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 1262 321 82 20 0 chr9 88737026 88737075 -35339097 + B1_Mus1 SINE Alu 1 50 -98 3 1262 1138 90 0 0 chr9 88737330 88737475 -35338697 - B1_Mus2 SINE Alu 0 147 3 3 1262 787 51 246 0 chr9 88738127 88738245 -35337927 + B1_Mus1 SINE Alu 2 148 0 3 1262 232 263 92 31 chr9 88738513 88738611 -35337561 - PB1D7 SINE Alu -9 111 8 3 1262 424 127 0 14 chr9 88738904 88738976 -35337196 + B2_Mm2 SINE B2 109 179 -16 3 1262 436 219 61 9 chr9 88739532 88739647 -35336525 - RSINE1 SINE B4 -29 136 16 3 1262 1360 77 16 0 chr9 88739896 88740078 -35336094 - B2_Mm1t SINE B2 -8 185 1 3 1262 2007 47 51 0 chr9 88740133 88740388 -35335784 + L1Md_F2 LINE L1 6315 6582 0 3 1262 1305 77 32 32 chr9 88740646 88740835 -35335337 - B2_Mm2 SINE B2 -5 190 2 3 1262 1046 80 15 0 chr9 88740919 88741056 -35335116 - B1_Mus2 SINE Alu -8 139 1 3 1262 727 208 0 0 chr9 88741058 88741188 -35334984 - B1_Mur3 SINE Alu -19 130 1 3 1262 1381 71 16 11 chr9 88741236 88741421 -35334751 + B2_Mm2 SINE B2 2 187 -8 3 1262 531 300 0 21 chr9 88741440 88741583 -35334589 + B1F2 SINE Alu 6 145 -4 3 1262 2216 130 9 0 chr9 88742753 88743077 -35333095 + ORR1A2 LTR MaLR 1 327 0 3 1262 1068 122 70 32 chr9 88743094 88743280 -35332892 + B2_Mm2 SINE B2 2 194 -1 3 1262 1375 81 27 5 chr9 88743350 88743537 -35332635 - B2_Mm1t SINE B2 -1 192 2 3 1262 1355 79 16 10 chr9 88744068 88744260 -35331912 + B2_Mm2 SINE B2 1 193 -2 3 1262 286 304 29 10 chr9 88744831 88744934 -35331238 + Lx9 LINE L1 7065 7169 -475 3 1262 2231 246 103 35 chr9 88745290 88745406 -35330766 - Lx6 LINE L1 -216 7244 7122 3 1262 755 110 141 8 chr9 88745406 88745534 -35330638 + B1_Mus1 SINE Alu 2 146 -2 3 1262 2231 252 102 35 chr9 88745534 88746206 -35329966 - Lx6 LINE L1 -339 7121 6191 3 1262 225 0 0 0 chr9 88746206 88746231 -35329941 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 3 1262 1138 71 0 0 chr9 88746233 88746374 -35329798 - B1_Mus2 SINE Alu -6 141 1 3 1262 2966 165 88 14 chr9 88746374 88747135 -35329037 - Lx6 LINE L1 -860 6190 5253 3 1262 1127 70 0 0 chr9 88747136 88747278 -35328894 - B1_Mus1 SINE Alu -5 143 2 3 1262 718 158 60 8 chr9 88747316 88747450 -35328722 + B1_Mur2 SINE Alu 5 145 -4 3 1262 240 35 0 0 chr9 88747451 88747480 -35328692 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 1262 706 125 23 0 chr9 88747483 88747609 -35328563 - B2_Mm2 SINE B2 -48 168 27 3 1262 192 125 0 0 chr9 88747671 88747703 -35328469 + (G)n Simple_repeat Simple_repeat 1 32 0 3 1262 353 254 114 47 chr9 88748048 88748159 -35328013 + B3A SINE B2 10 137 -61 3 1262 4615 157 26 12 chr9 88748159 88749002 -35327170 + RLTR13A LTR ERVK 1 855 0 3 1262 353 254 114 47 chr9 88749002 88749039 -35327133 + B3A SINE B2 138 168 -30 3 1262 341 234 204 18 chr9 88749361 88749474 -35326698 + B1F1 SINE Alu 7 140 -9 3 1262 341 229 132 9 chr9 88749830 88749936 -35326236 - B1_Mus2 SINE Alu -16 131 13 3 1262 245 132 0 0 chr9 88750016 88750054 -35326118 - PB1 SINE Alu -53 74 37 3 1262 236 219 190 0 chr9 88750069 88750206 -35325966 + L1M2 LINE L1 2855 3017 -3126 3 1262 864 75 5 244 chr9 88750265 88750458 -35325714 - B1_Mm SINE Alu 0 147 1 3 1262 469 188 104 0 chr9 88750788 88750884 -35325288 + B1_Mus1 SINE Alu 2 107 -41 3 1262 228 203 187 13 chr9 88751115 88751190 -35324982 + B1_Mur1 SINE Alu 62 149 0 3 1262 27 62 0 0 chr9 88751931 88751979 -35324193 + AT_rich Low_complexity Low_complexity 1 48 0 3 1262 248 0 31 0 chr9 88752442 88752474 -35323698 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1262 473 82 0 14 chr9 88754357 88754431 -35321741 - B2_Mm2 SINE B2 -122 73 1 3 1262 428 304 18 37 chr9 88754517 88754681 -35321491 + RSINE1 SINE B4 1 161 -4 3 1262 828 285 49 11 chr9 88754894 88755160 -35321012 - B4 SINE B4 -14 278 3 3 1262 540 0 0 0 chr9 88755194 88755254 -35320918 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 3 1262 477 0 0 0 chr9 88755259 88755312 -35320860 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1262 459 223 19 10 chr9 88755317 88755421 -35320751 - B1_Mur1 SINE Alu -11 138 34 3 1262 607 283 27 5 chr9 88755392 88755577 -35320595 - B4 SINE B4 -30 262 74 3 1262 1305 82 37 16 chr9 88755577 88755764 -35320408 - B2_Mm2 SINE B2 -3 192 2 3 1262 727 179 227 5 chr9 88755848 88756033 -35320139 + URR1A DNA MER1_type 1 226 0 3 1262 825 251 47 181 chr9 88756302 88756673 -35319499 + MTEb LTR MaLR 6 322 -57 3 1262 1148 75 0 0 chr9 88756673 88756819 -35319353 - B1_Mm SINE Alu 0 147 2 3 1262 825 251 47 181 chr9 88756819 88756856 -35319316 + MTEb LTR MaLR 323 359 -20 3 1262 462 79 0 0 chr9 88756861 88756924 -35319248 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 3 1262 195 129 0 0 chr9 88756985 88757016 -35319156 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1262 558 50 0 36 chr9 88757053 88757136 -35319036 - B1_Mur4 SINE Alu 0 150 71 3 1262 405 215 0 0 chr9 88757413 88757506 -35318666 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 1262 848 239 11 5 chr9 88757520 88757705 -35318467 - B3 SINE B2 -24 192 7 3 1262 230 248 186 10 chr9 88758032 88758134 -35318038 - MER3 DNA MER1_type -85 124 5 3 1262 190 56 27 27 chr9 88758388 88758425 -35317747 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 3 1262 1476 142 190 7 chr9 88758663 88758968 -35317204 + RMER19A LTR ERVK 377 737 0 3 1262 225 197 149 40 chr9 88758969 88759043 -35317129 + RMER15 LTR ERVL 494 575 0 3 1262 1592 205 30 43 chr9 88759850 88760247 -35315925 - MTD LTR MaLR -8 411 20 3 1262 240 187 89 51 chr9 88760938 88761017 -35315155 - LTRIS4 LTR ERV1 -50 457 376 3 1262 2483 145 22 40 chr9 88761866 88762369 -35313803 - L1_Mur2 LINE L1 -3714 2163 1670 3 1262 7482 80 8 21 chr9 88762339 88763373 -35312799 - L1_Mus4 LINE L1 0 6636 5617 3 1262 8385 26 9 5 chr9 88763373 88764347 -35311825 + RLTR13A3 LTR ERVK 1 978 0 3 1262 19373 40 6 24 chr9 88764347 88766783 -35309389 + ETnERV3-int LTR ERVK 1 2392 -3416 3 1262 230 182 0 22 chr9 88766783 88766828 -35309344 + L1_Mur2 LINE L1 3769 3812 -2065 3 1262 6553 174 17 6 chr9 88766823 88768069 -35308103 + Lx4B LINE L1 3759 5018 -859 3 1262 985 9 0 0 chr9 88768073 88768184 -35307988 + MERVL-int LTR ERVL 5261 5371 -114 3 1262 322 139 26 53 chr9 88768184 88768260 -35307912 + ORR1A3-int LTR MaLR 567 640 -1323 3 1262 321 0 0 0 chr9 88768260 88768298 -35307874 + MERVL-int LTR ERVL 5448 5485 0 3 1262 2347 14 0 0 chr9 88768298 88768584 -35307588 + MT2_Mm LTR ERVL 1 286 -207 3 1262 3924 167 80 50 chr9 88768585 88768853 -35307319 + Lx4B LINE L1 5026 5308 -569 3 1262 1246 41 0 0 chr9 88768853 88769000 -35307172 - B1_Mus1 SINE Alu -1 147 1 3 1262 5974 198 79 34 chr9 88769000 88770658 -35305514 + Lx4B LINE L1 5309 7054 -4 3 1262 504 142 130 19 chr9 88770679 88770787 -35305385 - MTC LTR MaLR -301 120 1 3 1262 1772 214 35 5 chr9 88771531 88771931 -35304241 + MTC LTR MaLR 8 419 -2 3 1262 387 89 0 0 chr9 88773218 88773274 -35302898 + (CATA)n Simple_repeat Simple_repeat 4 59 0 3 1262 657 249 28 42 chr9 88774335 88774549 -35301623 - B3 SINE B2 -5 211 1 3 1262 22 0 0 0 chr9 88775713 88775735 -35300437 + AT_rich Low_complexity Low_complexity 1 22 0 3 1262 9253 23 0 0 chr9 88775740 88777472 -35298700 - L1Md_T LINE L1 -6 6576 4846 3 1262 485 32 0 16 chr9 88777581 88777645 -35298527 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1262 468 62 0 0 chr9 88780179 88780243 -35295929 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1262 294 29 0 0 chr9 88781159 88781194 -35294978 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1262 827 160 61 0 chr9 88782238 88782369 -35293803 - B1_Mur3 SINE Alu -9 140 2 3 1262 688 85 17 0 chr9 88782380 88782498 -35293674 + (TC)n Simple_repeat Simple_repeat 1 120 0 3 1262 2880 31 2 234 chr9 88784741 88785249 -35290923 + RLTR10 LTR ERVK 1 390 0 3 1262 13673 24 18 0 chr9 88785259 88787240 -35288932 + RLTR10-int LTR ERVK 41 1984 -3 3 1262 3061 28 2 179 chr9 88787242 88787716 -35288456 + RLTR10 LTR ERVK 1 390 0 3 1262 232 347 33 59 chr9 88787724 88787877 -35288295 - MTEb LTR MaLR -14 365 217 3 1262 407 360 32 41 chr9 88788070 88788290 -35287882 - ID_B1 SINE B4 -5 219 2 3 1262 4006 51 0 18 chr9 88790251 88790748 -35285424 + L1Md_F2 LINE L1 6070 6557 -25 3 1262 297 0 0 0 chr9 88790751 88790784 -35285388 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 3 1262 274 341 12 24 chr9 88791938 88792022 -35284150 - RSINE1 SINE B4 -44 121 39 3 1262 1529 282 90 72 chr9 88792448 88793262 -35282910 + L1_Rod LINE L1 4139 4952 -895 3 1262 4476 33 12 14 chr9 88793262 88793780 -35282392 - L1Md_F3 LINE L1 0 6584 6068 3 1262 1529 282 90 72 chr9 88793780 88794034 -35282138 + L1_Rod LINE L1 4953 5226 -621 3 1262 296 320 196 20 chr9 88794103 88794307 -35281865 + Lx9 LINE L1 7207 7446 -198 3 1262 1211 260 129 7 chr9 88794880 88794947 -35281225 + Lx5 LINE L1 885 954 -5703 3 1262 1374 116 5 0 chr9 88794947 88795137 -35281035 + B2_Mm1t SINE B2 2 192 -1 3 1262 5243 177 62 13 chr9 88795137 88796460 -35279712 + Lx5 LINE L1 955 2335 -3542 3 1262 11428 185 24 46 chr9 88796488 88799803 -35276369 + Lx5 LINE L1 3900 7047 -3 3 1262 337 287 126 49 chr9 88799884 88800067 -35276105 - B4A SINE B4 -81 211 15 3 1262 2819 127 19 10 chr9 88800191 88800662 -35275510 - Lx2 LINE L1 -85 6912 6351 3 1262 352 308 68 115 chr9 88801667 88801920 -35274252 + MTE2b LTR MaLR 62 299 -80 3 1262 2713 74 13 29 chr9 88801920 88802297 -35273875 + L1Md_F2 LINE L1 6212 6582 0 3 1262 328 303 70 120 chr9 88802297 88802334 -35273838 + MTE2b LTR MaLR 300 339 -40 3 1262 6391 49 9 1 chr9 88802335 88803085 -35273087 - L1Md_F3 LINE L1 -1 6583 5828 3 1262 288 273 9 18 chr9 88803624 88803736 -35272436 + (TA)n Simple_repeat Simple_repeat 2 112 0 3 1262 198 91 0 0 chr9 88805547 88805580 -35270592 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1262 1874 118 46 65 chr9 88807406 88807731 -35268441 - ORR1A2 LTR MaLR -8 319 1 3 1262 2148 187 23 8 chr9 88808331 88808719 -35267453 - ORR1B1 LTR MaLR 0 394 1 3 1262 202 185 0 36 chr9 88808727 88808783 -35267389 + T-rich Low_complexity Low_complexity 2 55 0 4 1262 9221 66 2 1 chr9 88808846 88810036 -35266136 + L1_Mur1 LINE L1 3926 5116 -770 4 1262 2678 108 26 33 chr9 88810038 88810429 -35265743 + Lx3_Mus LINE L1 6617 7004 -5 4 1262 22 0 0 0 chr9 88812266 88812288 -35263884 + AT_rich Low_complexity Low_complexity 1 22 0 4 1262 522 292 58 31 chr9 88812304 88812495 -35263677 - Lx8 LINE L1 -29 7444 7249 4 1262 2841 247 144 51 chr9 88813076 88814363 -35261809 + RMER1A Other Other 1 1030 0 4 1262 404 359 13 13 chr9 88814365 88814523 -35261649 - ID_B1 SINE B4 -65 159 2 4 1262 538 310 108 27 chr9 88814733 88815028 -35261144 + Lx8 LINE L1 7097 7415 -58 4 1262 26 50 0 0 chr9 88815056 88815096 -35261076 + AT_rich Low_complexity Low_complexity 1 40 0 4 1262 201 129 0 0 chr9 88815840 88815871 -35260301 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 1262 378 339 81 29 chr9 88817908 88818081 -35258091 + MTE2b LTR MaLR 36 217 -162 4 1262 450 0 0 0 chr9 88819739 88819789 -35256383 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1262 337 364 65 32 chr9 88820653 88820869 -35255303 - ID_B1 SINE B4 0 224 2 4 1262 263 289 0 50 chr9 88821095 88821175 -35254997 + B1_Mur3 SINE Alu 5 80 -69 4 1262 423 0 0 0 chr9 88821181 88821228 -35254944 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1262 273 57 0 0 chr9 88821697 88821732 -35254440 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1262 683 52 0 10 chr9 88821732 88821829 -35254343 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1262 452 293 19 70 chr9 88823090 88823248 -35252924 + RLTR33 LTR ERVK 444 593 -85 4 1262 357 319 26 0 chr9 88823482 88823598 -35252574 - RSINE1 SINE B4 -45 120 2 4 1262 257 301 158 55 chr9 88825020 88825203 -35250969 + MTEa LTR MaLR 16 217 -162 4 1262 185 265 0 39 chr9 88826377 88826428 -35249744 - L2 LINE L2 -2914 505 457 4 1262 297 0 0 0 chr9 88826590 88826623 -35249549 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1262 226 350 32 83 chr9 88827248 88827404 -35248768 - ID_B1 SINE B4 -63 161 14 4 1262 366 238 135 0 chr9 88827633 88827706 -35248466 + B1_Mur4 SINE Alu 7 94 -56 4 1262 582 93 0 0 chr9 88827706 88827792 -35248380 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 4 1262 366 238 135 0 chr9 88827792 88827844 -35248328 + B1_Mur4 SINE Alu 95 148 -2 4 1262 1089 122 0 0 chr9 88831743 88831890 -35244282 + B1_Mus2 SINE Alu 1 147 0 4 1262 566 100 22 0 chr9 88831890 88831980 -35244192 + (GAAA)n Simple_repeat Simple_repeat 4 95 0 4 1262 1105 230 22 4 chr9 88832418 88832649 -35243523 + ORR1D1 LTR MaLR 140 374 0 4 1262 1823 233 28 40 chr9 88832709 88833205 -35242967 - RLTR11A2 LTR ERVK -21 506 17 4 1262 21 36 0 0 chr9 88833238 88833266 -35242906 + AT_rich Low_complexity Low_complexity 1 28 0 4 1262 216 330 53 18 chr9 88834543 88834657 -35241515 - L2 LINE L2 -1563 1856 1739 4 1262 278 288 82 48 chr9 88835052 88835198 -35240974 + L1_Mur3 LINE L1 4209 4359 -1521 4 1262 1672 124 8 0 chr9 88835218 88835460 -35240712 + L1_Mus2 LINE L1 6037 6280 -286 4 1262 623 135 0 37 chr9 88835460 88835568 -35240604 + L1_Mus2 LINE L1 6462 6565 -1 4 1262 1752 317 52 79 chr9 88835595 88835844 -35240328 + L1_Mur3 LINE L1 4393 4596 -1284 4 1262 4264 79 88 7 chr9 88835844 88836420 -35239752 - L1_Mus4 LINE L1 -1 6635 6013 4 1262 1752 317 52 79 chr9 88836420 88837687 -35238485 + L1_Mur3 LINE L1 4597 5868 -12 4 1262 216 0 0 0 chr9 88838079 88838103 -35238069 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 1262 215 320 76 19 chr9 88838570 88838675 -35237497 - MIRm SINE MIR -6 270 160 4 1262 399 119 34 0 chr9 88839080 88839139 -35237033 + Lx7 LINE L1 7052 7112 -584 4 1262 247 195 25 25 chr9 88839183 88839262 -35236910 + T-rich Low_complexity Low_complexity 1 79 0 4 1262 480 289 66 88 chr9 88839491 88839719 -35236453 - RMER12 LTR ERVK 0 1322 1100 4 1262 3483 72 11 2 chr9 88839867 88840314 -35235858 + L1_Mm LINE L1 5306 5756 -127 4 1262 508 239 0 0 chr9 88840315 88840424 -35235748 + L1Md_F3 LINE L1 320 428 -6191 4 1262 263 125 0 0 chr9 88840425 88840465 -35235707 + L1Md_F3 LINE L1 593 632 -5987 4 1262 35837 47 4 0 chr9 88840463 88845147 -35231025 + L1Md_F3 LINE L1 792 5589 -297 4 1262 8383 49 14 0 chr9 88845147 88846130 -35230042 + L1Md_F3 LINE L1 5590 6586 -1 4 1262 4547 154 10 20 chr9 88846154 88846967 -35229205 - RLTR22_Mur LTR ERVK -1043 805 1 4 1262 354 80 0 0 chr9 88847123 88847173 -35228999 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 4 1262 189 0 0 0 chr9 88847364 88847385 -35228787 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1262 647 283 68 140 chr9 88847549 88847993 -35228179 + RMER10A LTR ERVL 12 423 -19 4 1262 504 0 0 0 chr9 88849143 88849199 -35226973 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 4 1262 255 363 111 31 chr9 88850097 88850421 -35225751 - LTR16B2 LTR ERVL -61 401 52 4 1262 583 251 84 45 chr9 88851219 88851398 -35224774 + B3 SINE B2 2 187 -29 4 1262 285 226 13 84 chr9 88852730 88852823 -35223349 + PB1 SINE Alu 21 97 -30 4 1262 190 336 35 61 chr9 88853106 88853220 -35222952 + MIRb SINE MIR 51 161 -107 4 1262 323 315 108 0 chr9 88854092 88854203 -35221969 - MLT1A1 LTR MaLR -285 123 1 4 1262 530 29 15 0 chr9 88854606 88854674 -35221498 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 4 1262 848 283 38 0 chr9 88855304 88855516 -35220656 + ID_B1 SINE B4 5 224 0 4 1262 342 302 101 0 chr9 88855624 88855753 -35220419 - B1F SINE Alu -1 148 7 4 1262 217 257 84 14 chr9 88855757 88855828 -35220344 + MIRc SINE MIR 83 158 -110 4 1262 334 320 72 65 chr9 88856195 88856404 -35219768 + MER33 DNA MER1_type 31 251 -73 4 1262 1993 145 102 25 chr9 88856404 88856580 -35219592 + ORR1C2 LTR MaLR 3 188 -196 4 1262 288 102 0 0 chr9 88856580 88856629 -35219543 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 4 1262 1993 145 102 25 chr9 88856629 88856805 -35219367 + ORR1C2 LTR MaLR 189 382 -2 4 1262 334 320 72 65 chr9 88856805 88856886 -35219286 + MER33 DNA MER1_type 252 323 -1 4 1262 225 132 0 73 chr9 88857841 88857923 -35218249 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 4 1262 379 306 20 10 chr9 88858159 88858258 -35217914 - ID_B1 SINE B4 -58 166 67 4 1262 21 57 0 0 chr9 88858262 88858297 -35217875 + AT_rich Low_complexity Low_complexity 1 35 0 4 1262 593 291 104 22 chr9 88858481 88858664 -35217508 + B3A SINE B2 1 198 0 4 1262 246 387 43 0 chr9 88859070 88859163 -35217009 - B1F1 SINE Alu -52 97 1 4 1262 1219 177 22 9 chr9 88861012 88861234 -35214938 - URR1B DNA MER1_type 0 225 1 4 1262 339 282 151 11 chr9 88861377 88861556 -35214616 - L1MB2 LINE L1 -8 6163 5960 4 1262 282 83 0 0 chr9 88861560 88861596 -35214576 - U2 snRNA snRNA -152 36 1 4 1262 412 216 17 8 chr9 88861764 88861881 -35214291 + CT-rich Low_complexity Low_complexity 3 120 0 4 1262 472 224 94 40 chr9 88862401 88862550 -35213622 + B4A SINE B4 1 157 -135 4 1262 363 44 0 0 chr9 88862659 88862704 -35213468 + (CATA)n Simple_repeat Simple_repeat 3 47 0 4 1262 427 112 0 24 chr9 88863015 88863097 -35213075 + (CATA)n Simple_repeat Simple_repeat 4 83 0 4 1262 467 274 124 38 chr9 88863122 88863331 -35212841 - RMER15 LTR ERVL 0 575 349 4 1262 210 340 19 65 chr9 88864183 88864290 -35211882 + MIR SINE MIR 59 160 -102 4 1262 334 171 542 19 chr9 88866020 88866127 -35210045 - RSINE1 SINE B4 0 165 3 4 157 1098 251 27 32 chr9 88866748 88867086 -35209086 + RMER5 LTR ERV1 194 529 -5 4 1263 198 0 0 0 chr9 88867905 88867927 -35208245 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 4 1263 313 22 0 42 chr9 88867950 88867998 -35208174 + (TCCCC)n Simple_repeat Simple_repeat 3 48 0 4 1263 585 0 0 0 chr9 88867998 88868063 -35208109 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 4 1263 740 293 43 0 chr9 88868078 88868286 -35207886 - ID_B1 SINE B4 -6 218 2 4 1263 4002 38 2 0 chr9 88869563 88870188 -35205984 - L1Md_F3 LINE L1 -530 6054 5429 4 1263 4341 54 25 0 chr9 88870188 88870708 -35205464 + L1Md_F3 LINE L1 6051 6583 -1 4 1263 428 91 0 15 chr9 88871522 88871589 -35204583 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1263 311 250 0 13 chr9 88872103 88872180 -35203992 + Tigger10 DNA Tigger 1215 1290 -553 4 1263 712 281 19 56 chr9 88872274 88872542 -35203630 - L1MB1 LINE L1 -331 5837 5580 4 1263 22 0 0 0 chr9 88874287 88874309 -35201863 + AT_rich Low_complexity Low_complexity 1 22 0 4 1263 23 0 0 0 chr9 88875643 88875666 -35200506 + AT_rich Low_complexity Low_complexity 1 23 0 4 1263 985 280 181 3 chr9 88876027 88876350 -35199822 + MTEb LTR MaLR 1 379 0 4 1263 406 243 249 74 chr9 88876540 88876849 -35199323 + ORR1E LTR MaLR 7 360 -18 4 1263 1230 244 110 8 chr9 88877470 88877842 -35198330 - Lx8 LINE L1 -235 7238 6829 4 1263 508 259 48 82 chr9 88877888 88878094 -35198078 - B3 SINE B2 -14 202 4 4 1263 602 259 21 7 chr9 88878221 88878251 -35197921 + RCHARR1 DNA MER1_type 36 65 -909 4 1263 192 40 0 0 chr9 88878251 88878276 -35197896 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1263 602 259 21 7 chr9 88878276 88878385 -35197787 + RCHARR1 DNA MER1_type 66 176 -798 4 1263 267 214 0 0 chr9 88878406 88878476 -35197696 + CT-rich Low_complexity Low_complexity 1 70 0 4 1263 648 154 89 8 chr9 88878476 88878600 -35197572 - B1_Mur1 SINE Alu -7 142 9 4 1263 232 176 32 32 chr9 88878784 88878878 -35197294 + CT-rich Low_complexity Low_complexity 2 95 0 4 1263 233 344 0 0 chr9 88878888 88878952 -35197220 - ID4 SINE ID -17 66 3 4 1263 528 16 0 0 chr9 88879318 88879379 -35196793 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1263 788 191 41 41 chr9 88879401 88879570 -35196602 - B4 SINE B4 -2 290 122 4 1263 237 227 0 0 chr9 88879594 88879638 -35196534 - B4A SINE B4 -247 45 2 4 1263 588 355 119 30 chr9 88879674 88880362 -35195810 - Charlie7 DNA MER1_type -1586 1026 278 4 1263 252 305 110 0 chr9 88881406 88881488 -35194684 - MER5A1 DNA MER1_type -74 92 2 4 1263 10636 153 16 46 chr9 88881520 88882192 -35193980 + Lx5 LINE L1 3966 4585 -1292 4 1263 1154 89 7 0 chr9 88882192 88882338 -35193834 - B1_Mus1 SINE Alu 0 148 2 4 1263 10636 156 18 40 chr9 88882338 88883897 -35192275 + Lx5 LINE L1 4586 6150 -900 4 1263 264 305 106 37 chr9 88883925 88884142 -35192030 + RLTR16 LTR ERVK 31 283 -285 5 1263 4411 207 30 29 chr9 88884482 88885381 -35190791 + Lx5 LINE L1 6151 7050 0 4 1263 262 318 115 38 chr9 88885476 88885659 -35190513 - B4A SINE B4 -81 211 15 5 1263 24 77 0 0 chr9 88885767 88885819 -35190353 + AT_rich Low_complexity Low_complexity 1 52 0 5 1263 2836 118 7 2 chr9 88885819 88886236 -35189936 - Lx2 LINE L1 -85 6912 6494 5 1263 4233 175 23 7 chr9 88886900 88887597 -35188575 - ETnERV2-int LTR ERVK -204 7202 6495 5 1263 885 266 4 0 chr9 88887707 88887984 -35188188 - RLTR45-int LTR ERVK -469 7748 7506 5 1263 783 140 156 22 chr9 88887973 88888155 -35188017 - RLTR45-int LTR ERVK -1172 6072 5894 5 1263 34162 67 2 6 chr9 88888156 88893312 -35182860 + L1Md_F2 LINE L1 513 5589 -297 5 1263 8636 48 2 5 chr9 88893312 88894311 -35181861 + L1Md_F2 LINE L1 5590 6585 0 5 1263 5990 171 66 91 chr9 88894469 88896125 -35180047 - RLTR45-int LTR ERVK -1334 5910 4296 5 1263 760 220 374 25 chr9 88896160 88896382 -35179790 - ETnERV2-int LTR ERVK -4653 2753 2454 5 1263 602 138 128 0 chr9 88896395 88896504 -35179668 - RLTR19-int LTR ERVK -5077 1060 938 5 1263 553 249 183 19 chr9 88896491 88896704 -35179468 - RLTR19-int LTR ERVK -5449 688 441 5 1263 40074 43 1 26 chr9 88896716 88903192 -35172980 - L1Md_A LINE L1 -1 6581 273 5 1263 1637 180 101 30 chr9 88903192 88903558 -35172614 - RMER16-int LTR ERVK -4774 632 241 5 1263 274 282 50 50 chr9 88903691 88903889 -35172283 - RLTR19-int LTR ERVK -6878 366 169 5 1263 514 285 48 16 chr9 88904445 88904570 -35171602 - ETnERV2-int LTR ERVK -204 7202 7074 5 1263 396 324 66 101 chr9 88906152 88906440 -35169732 + MTE2b LTR MaLR 90 367 -12 5 1263 357 115 0 37 chr9 88906924 88907005 -35169167 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 1263 235 378 41 0 chr9 88907291 88907389 -35168783 - MLT2E LTR ERVL -399 229 128 5 1263 249 119 0 0 chr9 88908873 88908915 -35167257 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1263 320 318 36 36 chr9 88910180 88910317 -35165855 - RSINE1 SINE B4 -21 144 8 5 1263 248 349 102 39 chr9 88910548 88910754 -35165418 + MER2 DNA MER2_type 125 343 -2 5 1263 1065 188 98 0 chr9 88910896 88911172 -35165000 - L1_Mur2 LINE L1 -5839 873 571 5 1263 1377 111 5 0 chr9 88911172 88911361 -35164811 - B2_Mm1t SINE B2 -1 192 3 5 1263 233 152 0 21 chr9 88911363 88911410 -35164762 + T-rich Low_complexity Low_complexity 2 47 0 5 1263 280 325 196 20 chr9 88911941 88912145 -35164027 - Lx9 LINE L1 -198 7446 7207 5 1263 1645 270 105 58 chr9 88912196 88913231 -35162941 - L1_Rod LINE L1 -624 5223 4140 5 1263 286 341 12 24 chr9 88913658 88913742 -35162430 + RSINE1 SINE B4 39 121 -44 5 1263 339 383 21 16 chr9 88918118 88918309 -35157863 + ID_B1 SINE B4 2 193 -31 5 1263 272 333 121 8 chr9 88920268 88920392 -35155780 - MTE2b LTR MaLR -23 356 219 5 1263 791 89 22 7 chr9 88921147 88921283 -35154889 + (GA)n Simple_repeat Simple_repeat 1 138 0 5 1263 836 167 43 7 chr9 88921291 88921430 -35154742 + B1_Mus2 SINE Alu 2 145 -2 5 1263 31 82 0 0 chr9 88921523 88921596 -35154576 + AT_rich Low_complexity Low_complexity 1 73 0 5 1263 219 148 32 16 chr9 88921682 88921744 -35154428 + T-rich Low_complexity Low_complexity 3 65 0 5 1263 876 159 7 14 chr9 88921745 88921892 -35154280 - B1_Mus1 SINE Alu -1 147 2 5 1263 327 329 132 45 chr9 88921918 88922138 -35154034 + B4A SINE B4 34 272 -20 5 1263 235 176 28 56 chr9 88922251 88922323 -35153849 - B3 SINE B2 0 216 147 5 1263 5399 155 11 0 chr9 88922323 88923118 -35153054 - ETnERV2-int LTR ERVK -2184 5222 4419 5 1263 2461 224 41 73 chr9 88923115 88923198 -35152974 - ETnERV2-int LTR ERVK -2141 3265 3185 5 1263 1200 61 0 39 chr9 88923198 88923351 -35152821 + B1_Mm SINE Alu 1 147 0 5 1263 2461 224 41 73 chr9 88923351 88923455 -35152717 - ETnERV2-int LTR ERVK -2222 3184 3099 5 1263 1131 103 0 0 chr9 88923455 88923601 -35152571 + B1_Mm SINE Alu 2 147 0 5 1263 3094 145 25 14 chr9 88923601 88924165 -35152007 - ETnERV2-int LTR ERVK -3312 4094 3604 5 1263 937 122 96 12 chr9 88924161 88924327 -35151845 - ETnERV2-int LTR ERVK -3720 3686 3507 5 1263 5137 43 12 5 chr9 88924327 88924910 -35151262 - LTRIS_Mus LTR ERV1 0 587 1 5 1263 347 62 0 0 chr9 88924910 88924958 -35151214 - MuRRS-int LTR ERV1 0 4690 4643 5 1263 4404 65 4 9 chr9 88924958 88925504 -35150668 + L1Md_F2 LINE L1 6030 6572 -10 5 1263 296 131 16 32 chr9 88925504 88925519 -35150653 - MuRRS-int LTR ERV1 -88 4975 4960 5 1263 6304 156 28 59 chr9 88925840 88927739 -35148433 - MuRRS-int LTR ERV1 -34 4656 1158 5 1263 1961 144 105 3 chr9 88927732 88928074 -35148098 - MuRRS-int LTR ERV1 -3223 1467 1091 5 1263 1615 199 59 25 chr9 88928118 88928586 -35147586 - MuRRS-int LTR ERV1 -4598 465 1 5 1263 4869 43 46 0 chr9 88928586 88929147 -35147025 - LTRIS_Mus LTR ERV1 0 587 1 5 1263 347 62 0 0 chr9 88929147 88929195 -35146977 - MuRRS-int LTR ERV1 0 4690 4643 5 1263 2802 34 0 0 chr9 88929195 88929517 -35146655 + L1Md_F2 LINE L1 6030 6351 -231 5 1263 275 85 21 0 chr9 88929517 88929564 -35146608 - LTRIS_Mus LTR ERV1 -539 48 1 5 1263 8387 153 103 85 chr9 88929568 88931724 -35144448 - RLTR45-int LTR ERVK -2947 4297 2100 5 1263 513 32 0 0 chr9 88931724 88931787 -35144385 + (TTTTA)n Simple_repeat Simple_repeat 4 66 0 5 1263 8387 221 62 63 chr9 88931787 88932172 -35144000 - RLTR45-int LTR ERVK -5145 2099 2084 5 1263 580 254 130 36 chr9 88932561 88932753 -35143419 + B3 SINE B2 1 210 -6 5 1263 423 52 0 0 chr9 88933778 88933836 -35142336 + (TATG)n Simple_repeat Simple_repeat 4 61 0 5 1263 1936 209 35 5 chr9 88935113 88935513 -35140659 - MTC LTR MaLR -2 419 8 5 1263 36249 46 0 4 chr9 88935623 88941110 -35135062 + L1Md_T LINE L1 25 5589 -297 5 1263 8943 32 2 0 chr9 88941110 88942104 -35134068 + L1Md_T LINE L1 5590 6585 0 5 1263 543 142 130 19 chr9 88942755 88942863 -35133309 + MTC LTR MaLR 1 120 -301 5 1263 14250 207 70 25 chr9 88942884 88944495 -35131677 - Lx4B LINE L1 -4 7054 5309 5 1263 1246 41 0 0 chr9 88944495 88944642 -35131530 + B1_Mus1 SINE Alu 1 147 -1 5 1263 14250 170 36 32 chr9 88944642 88946754 -35129418 - Lx4B LINE L1 -569 5308 3199 5 1263 4529 138 52 78 chr9 88946754 88947680 -35128492 - RLTR13D6 LTR ERVK 0 902 1 5 1263 14250 170 36 32 chr9 88947680 88947917 -35128255 - Lx4B LINE L1 -2679 3198 2962 5 1263 416 343 57 0 chr9 88948215 88948355 -35127817 - B3A SINE B2 -50 148 1 5 1263 218 278 0 0 chr9 88948734 88948788 -35127384 - ID2 SINE ID -27 56 3 5 1263 537 212 19 214 chr9 88949168 88949244 -35126928 - B4 SINE B4 -2 290 225 5 1263 216 0 0 0 chr9 88949244 88949268 -35126904 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 5 1263 537 212 19 214 chr9 88949268 88949290 -35126882 - B4 SINE B4 -68 224 214 5 1263 291 28 0 0 chr9 88949290 88949326 -35126846 + (TTG)n Simple_repeat Simple_repeat 2 37 0 5 1263 1176 68 0 0 chr9 88949334 88949480 -35126692 - B1_Mm SINE Alu 0 147 2 5 1263 537 212 19 214 chr9 88949480 88949581 -35126591 - B4 SINE B4 -81 211 122 5 1263 216 195 24 0 chr9 88949605 88949646 -35126526 - B4A SINE B4 -247 45 4 5 1263 1040 65 13 13 chr9 88949662 88949819 -35126353 + B2_Mm2 SINE B2 38 194 -1 5 1263 1432 63 0 17 chr9 88949883 88950062 -35126110 + B2_Mm1t SINE B2 1 176 -17 5 1263 1521 38 0 47 chr9 88950062 88950255 -35125917 + B2_Mm1t SINE B2 1 184 -9 5 1263 279 258 134 52 chr9 88950441 88950613 -35125559 - MER3 DNA MER1_type -9 200 15 5 1263 202 56 27 27 chr9 88950878 88950915 -35125257 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 5 1263 1240 106 21 11 chr9 88951328 88951519 -35124653 + B2_Mm1t SINE B2 1 193 0 5 1263 1930 144 17 9 chr9 88951536 88951885 -35124287 + ORR1B2 LTR MaLR 16 367 0 5 1263 24 0 0 0 chr9 88951928 88951952 -35124220 + AT_rich Low_complexity Low_complexity 1 24 0 5 1263 1132 75 7 0 chr9 88952165 88952311 -35123861 + B1_Mus1 SINE Alu 2 148 0 5 1263 7722 90 8 22 chr9 88952338 88953504 -35122668 + L1_Mus4 LINE L1 5488 6636 0 5 1263 2408 148 26 40 chr9 88953474 88953975 -35122197 + L1_Mur2 LINE L1 1670 2163 -3714 5 1263 240 187 89 51 chr9 88954824 88954903 -35121269 + LTRIS4 LTR ERV1 376 457 -50 5 1263 1608 203 30 43 chr9 88955594 88955991 -35120181 + MTD LTR MaLR 20 411 -8 5 1263 1455 145 190 7 chr9 88956873 88957178 -35118994 - RMER19A LTR ERVK 0 737 377 5 1263 253 82 41 0 chr9 88957416 88957465 -35118707 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1263 230 248 186 10 chr9 88957711 88957813 -35118359 + MER3 DNA MER1_type 5 124 -85 5 1263 859 234 11 5 chr9 88958140 88958325 -35117847 + B3 SINE B2 7 192 -24 5 1263 816 141 0 0 chr9 88958339 88958474 -35117698 + (TA)n Simple_repeat Simple_repeat 1 135 0 5 1263 538 88 0 0 chr9 88958751 88958831 -35117341 + B1_Mus2 SINE Alu 68 147 0 5 1263 834 266 55 138 chr9 88958829 88959191 -35116981 - MTEa LTR MaLR -42 337 6 5 1263 727 179 227 5 chr9 88959460 88959645 -35116527 - URR1A DNA MER1_type 0 226 1 5 1263 1305 82 37 16 chr9 88959729 88959916 -35116256 + B2_Mm2 SINE B2 2 192 -3 5 1263 604 283 27 5 chr9 88959916 88960101 -35116071 + B4 SINE B4 74 262 -30 5 1263 489 204 19 10 chr9 88960072 88960176 -35115996 + B1_Mur1 SINE Alu 34 138 -11 5 1263 387 0 0 0 chr9 88960181 88960224 -35115948 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1263 324 0 0 0 chr9 88960229 88960265 -35115907 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 5 1263 813 289 49 11 chr9 88960299 88960565 -35115607 + B4 SINE B4 3 278 -14 5 1263 401 310 18 37 chr9 88960778 88960942 -35115230 - RSINE1 SINE B4 -4 161 1 5 1263 452 96 0 14 chr9 88961028 88961102 -35115070 + B2_Mm2 SINE B2 1 73 -122 5 1263 2793 11 0 222 chr9 88962626 88963098 -35113074 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1263 56810 20 18 2 chr9 88963098 88969472 -35106700 + IAPEz-int LTR ERVK 8 6481 0 5 1263 2807 8 0 222 chr9 88969472 88969944 -35106228 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1263 212 0 36 0 chr9 88970301 88970329 -35105843 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1263 26 64 0 0 chr9 88970794 88970841 -35105331 + AT_rich Low_complexity Low_complexity 1 47 0 5 1263 228 203 187 13 chr9 88971582 88971657 -35104515 - B1_Mur1 SINE Alu 0 149 62 5 1263 469 188 104 0 chr9 88971888 88971984 -35104188 - B1_Mus1 SINE Alu -41 107 2 5 1263 227 265 0 148 chr9 88972302 88972417 -35103755 + MT2B LTR ERVL 155 252 -349 5 1263 798 137 8 50 chr9 88972314 88972507 -35103665 + B1_Mm SINE Alu 1 147 0 5 1263 261 225 181 0 chr9 88972569 88972707 -35103465 - L1M2 LINE L1 -3126 3017 2855 5 1263 245 132 0 0 chr9 88972722 88972760 -35103412 + PB1 SINE Alu 37 74 -53 5 1263 341 229 132 9 chr9 88972840 88972946 -35103226 + B1_Mus2 SINE Alu 13 131 -16 5 1263 24 32 0 0 chr9 88973233 88973264 -35102908 + AT_rich Low_complexity Low_complexity 1 31 0 5 1263 341 234 204 18 chr9 88973302 88973415 -35102757 - B1F1 SINE Alu -9 140 7 5 1263 319 254 145 48 chr9 88973740 88973777 -35102395 - B3A SINE B2 -30 168 136 5 1263 4709 152 26 12 chr9 88973777 88974620 -35101552 - RLTR13A LTR ERVK 0 855 1 6 1263 319 254 145 48 chr9 88974620 88974727 -35101445 - B3A SINE B2 -63 135 10 5 1263 209 207 0 17 chr9 88975073 88975132 -35101040 + C-rich Low_complexity Low_complexity 3 60 0 6 1263 686 122 25 0 chr9 88975188 88975309 -35100863 + B2_Mm2 SINE B2 32 168 -48 6 1263 649 175 56 35 chr9 88975326 88975468 -35100704 - B1_Mur2 SINE Alu -4 145 1 6 1263 1116 78 0 0 chr9 88975502 88975644 -35100528 + B1_Mus1 SINE Alu 2 143 -5 6 1263 2851 194 86 30 chr9 88975645 88976379 -35099793 + Lx6 LINE L1 5253 6126 -924 6 1263 1111 76 14 0 chr9 88976379 88976524 -35099648 + B1_Mus2 SINE Alu 1 147 0 6 1263 2187 254 110 52 chr9 88976524 88977238 -35098934 + Lx6 LINE L1 6127 7121 -339 6 1263 819 57 187 8 chr9 88977238 88977361 -35098811 - B1_Mus1 SINE Alu -2 146 2 6 1263 2187 253 106 42 chr9 88977361 88977487 -35098685 + Lx6 LINE L1 7122 7244 -216 6 1263 310 287 40 0 chr9 88977833 88977934 -35098238 - Lx9 LINE L1 -475 7169 7065 6 1263 1217 99 33 11 chr9 88978497 88978681 -35097491 - B2_Mm1a SINE B2 -5 188 1 6 1263 1269 113 16 5 chr9 88979222 88979409 -35096763 + B2_Mm1t SINE B2 2 190 -3 6 1263 1234 90 25 74 chr9 88979474 88979677 -35096495 - B2_Mm2 SINE B2 -1 194 2 6 1263 2208 130 9 0 chr9 88979694 88980018 -35096154 - ORR1A2 LTR MaLR 0 327 1 6 1263 519 275 14 35 chr9 88981174 88981317 -35094855 - B1F2 SINE Alu -4 145 6 6 1263 1424 60 16 11 chr9 88981333 88981518 -35094654 - B2_Mm2 SINE B2 -8 187 2 6 1263 699 215 0 0 chr9 88981566 88981696 -35094476 + B1_Mur3 SINE Alu 1 130 -19 6 1263 945 91 13 40 chr9 88981698 88981847 -35094325 + B1_Mus2 SINE Alu 1 145 -2 6 1263 1437 61 11 0 chr9 88982113 88982294 -35093878 + B2_Mm1t SINE B2 4 186 -7 6 1263 413 252 52 0 chr9 88982543 88982658 -35093514 + RSINE1 SINE B4 16 136 -29 6 1263 424 127 0 14 chr9 88983226 88983298 -35092874 - B2_Mm2 SINE B2 -16 179 109 6 1263 232 263 92 31 chr9 88983591 88983689 -35092483 + PB1D7 SINE Alu 8 111 -9 6 1263 765 59 246 0 chr9 88983958 88984076 -35092096 - B1_Mus1 SINE Alu 0 148 2 6 1263 1152 83 0 0 chr9 88984728 88984873 -35091299 + B1_Mus2 SINE Alu 3 147 0 6 1263 326 61 20 0 chr9 88985129 88985178 -35090994 - B1_Mus1 SINE Alu -98 50 1 6 1263 315 0 0 0 chr9 88985530 88985565 -35090607 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1263 22 0 0 0 chr9 88985648 88985670 -35090502 + AT_rich Low_complexity Low_complexity 1 22 0 6 1263 859 113 6 119 chr9 88986959 88987119 -35089053 + B1_Mus1 SINE Alu 1 142 -6 6 1263 257 356 0 55 chr9 88987716 88987826 -35088346 + PB1D10 SINE Alu 1 104 -13 6 1263 249 57 0 0 chr9 88987829 88987864 -35088308 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 1263 1078 57 43 0 chr9 88987864 88988004 -35088168 - B1_Mm SINE Alu 0 147 2 6 1263 235 254 30 0 chr9 88988501 88988568 -35087604 - MT2A LTR ERVL -356 177 109 6 1263 413 244 8 78 chr9 88988590 88988719 -35087453 - MT2A LTR ERVL -413 120 1 6 1263 270 311 114 51 chr9 88988813 88988989 -35087183 - MTEa LTR MaLR -154 225 39 6 1263 605 145 111 0 chr9 88989028 88989145 -35087027 + MT2B LTR ERVL 472 601 0 6 1263 2061 186 64 6 chr9 88989145 88989615 -35086557 + ORR1A3-int LTR MaLR 1 497 -1466 6 1263 381 159 14 0 chr9 88989615 88989684 -35086488 - Lx4B LINE L1 -834 6224 6155 6 1263 2225 168 90 86 chr9 88989679 88989920 -35086252 - L1_Mur3 LINE L1 -2611 3269 3001 6 1263 638 225 42 0 chr9 88989920 88990062 -35086110 - B1_Mus1 SINE Alu 0 148 1 6 1263 270 0 0 0 chr9 88990071 88990101 -35086071 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1263 2225 168 90 86 chr9 88990101 88990149 -35086023 - L1_Mur3 LINE L1 -2889 2991 2953 6 1263 1066 84 42 0 chr9 88990149 88990291 -35085881 + B1_Mus1 SINE Alu 1 148 0 6 1263 2225 168 90 86 chr9 88990291 88990615 -35085557 - L1_Mur3 LINE L1 -2928 2952 2643 6 1263 300 27 0 0 chr9 88990844 88990881 -35085291 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 6 1263 460 208 124 8 chr9 88990900 88991021 -35085151 - B1_Mus1 SINE Alu -1 147 13 6 1263 246 293 0 0 chr9 88990972 88991030 -35085142 - B4 SINE B4 -147 145 88 6 1263 436 214 0 0 chr9 88991119 88991217 -35084955 + B1_Mus2 SINE Alu 43 140 -7 6 1263 1696 232 54 77 chr9 88991485 88992079 -35084093 - Lx7 LINE L1 -1337 6359 5780 6 1263 4010 214 98 31 chr9 88992095 88993085 -35083087 - Lx5 LINE L1 -78 6972 5917 6 1263 983 123 14 0 chr9 88993099 88993245 -35082927 - B1_Mus1 SINE Alu 0 148 1 6 1263 1043 104 12 0 chr9 88993364 88993527 -35082645 + (TTCC)n Simple_repeat Simple_repeat 3 167 0 6 1263 1152 49 35 0 chr9 88993534 88993676 -35082496 - B1_Mm SINE Alu 0 147 1 6 1263 241 130 37 0 chr9 88993877 88993931 -35082241 + (TTG)n Simple_repeat Simple_repeat 3 58 0 6 1263 1185 42 7 0 chr9 88994090 88994232 -35081940 + B1_Mm SINE Alu 5 147 0 6 1263 1185 54 0 20 chr9 88994318 88994468 -35081704 + B1_Mm SINE Alu 1 147 0 6 1263 279 0 0 0 chr9 88994468 88994499 -35081673 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1263 4089 130 54 15 chr9 88995098 88995768 -35080404 - Lx4A LINE L1 -23 7035 6340 6 1263 1184 81 0 0 chr9 88995938 88996086 -35080086 - B1_Mus1 SINE Alu 0 148 1 6 1263 1143 75 0 7 chr9 88996324 88996471 -35079701 - B1_Mus2 SINE Alu 0 147 2 6 1263 1179 57 0 0 chr9 88996482 88996641 -35079531 - B2_Mm1t SINE B2 0 193 35 6 1263 1023 58 0 0 chr9 88996663 88996802 -35079370 - B1_Mus2 SINE Alu 0 147 9 6 1263 354 188 0 144 chr9 88996698 88996816 -35079356 - MT2B LTR ERVL -337 264 164 6 1263 251 301 9 82 chr9 88996703 88996935 -35079237 - ORR1B1-int LTR MaLR -755 754 540 6 1263 609 104 395 0 chr9 88997018 88997152 -35079020 - B2_Mm1t SINE B2 -5 188 2 6 1263 919 96 204 0 chr9 88997249 88997406 -35078766 - B2_Mm2 SINE B2 -6 189 1 6 1263 474 234 98 47 chr9 88997550 88997743 -35078429 + RLTRETN_Mm LTR ERVK 120 322 0 6 1264 1918 149 17 8 chr9 88998240 88998592 -35077580 - ORR1B2 LTR MaLR -2 365 11 6 1264 843 128 50 0 chr9 88999167 88999308 -35076864 + B2_Mm2 SINE B2 7 154 -41 6 1264 2555 113 113 20 chr9 88999308 88999749 -35076423 - RLTR45 LTR ERVK 0 482 1 6 1264 2047 48 0 0 chr9 88999752 89000000 -35076172 - L1Md_A LINE L1 0 6582 6335 6 1264 40650 25 2 6 chr9 89000000 89005944 -35070228 - L1Md_T LINE L1 -248 6334 422 1 1264 27 29 0 0 chr9 89005958 89005992 -35070180 + AT_rich Low_complexity Low_complexity 1 34 0 2 1264 23 68 0 0 chr9 89006208 89006252 -35069920 + AT_rich Low_complexity Low_complexity 1 44 0 3 1264 989 87 27 7 chr9 89006503 89006653 -35069519 - B2_Mm2 SINE B2 -5 190 38 4 1264 218 195 24 0 chr9 89006669 89006710 -35069462 + B4A SINE B4 4 45 -247 5 1264 733 236 23 35 chr9 89006734 89006905 -35069267 + B4 SINE B4 122 290 -2 5 1264 402 21 0 0 chr9 89006937 89006984 -35069188 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1264 238 278 0 0 chr9 89007340 89007394 -35068778 + ID2 SINE ID 3 56 -27 7 1264 488 333 50 0 chr9 89007773 89007914 -35068258 + B3A SINE B2 1 148 -50 8 1264 471 211 56 28 chr9 89008982 89009089 -35067083 - PB1D10 SINE Alu 0 117 8 9 1264 1147 254 16 17 chr9 89009753 89009985 -35066187 + Lx5 LINE L1 912 1184 -6544 1 1264 2913 123 37 39 chr9 89009985 89010468 -35065704 + RLTR45 LTR ERVK 1 482 0 1 1264 21144 176 45 43 chr9 89010468 89011372 -35064800 + Lx5 LINE L1 1185 2060 -3817 1 1264 216 0 0 0 chr9 89011372 89011396 -35064776 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1264 21144 175 45 44 chr9 89011396 89012506 -35063666 + Lx5 LINE L1 2061 3199 -2678 1 1264 5189 143 16 81 chr9 89012506 89013471 -35062701 + RLTR13D6 LTR ERVK 1 902 0 1 1264 21144 175 45 44 chr9 89013471 89013753 -35062419 + Lx5 LINE L1 3200 3479 -2398 1 1264 350 21 0 21 chr9 89013753 89013801 -35062371 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1264 21144 175 45 44 chr9 89013801 89014174 -35061998 + Lx5 LINE L1 3480 3849 -2028 1 1264 1093 116 0 0 chr9 89014174 89014320 -35061852 + B1_Mus2 SINE Alu 2 147 0 1 1264 21144 201 60 35 chr9 89014320 89017418 -35058754 + Lx5 LINE L1 3850 7047 -3 1 1264 504 135 151 19 chr9 89017438 89017544 -35058628 - MTC LTR MaLR -301 120 1 1 1264 1878 207 40 5 chr9 89018288 89018686 -35057486 + MTC LTR MaLR 8 419 -2 1 1264 214 259 0 0 chr9 89019073 89019127 -35057045 + T-rich Low_complexity Low_complexity 5 58 0 1 1264 264 100 0 0 chr9 89019999 89020039 -35056133 + (CATA)n Simple_repeat Simple_repeat 4 43 0 1 1264 724 254 28 42 chr9 89021091 89021305 -35054867 - B3 SINE B2 -5 211 1 2 1264 208 242 155 21 chr9 89021491 89021588 -35054584 - L3 LINE CR1 -832 3657 3548 2 1264 593 27 0 13 chr9 89022571 89022647 -35053525 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1264 333 0 0 0 chr9 89025177 89025214 -35050958 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1264 216 67 0 0 chr9 89026130 89026160 -35050012 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1264 827 160 61 0 chr9 89027206 89027337 -35048835 - B1_Mur3 SINE Alu -9 140 2 2 1264 724 82 16 0 chr9 89027348 89027470 -35048702 + (TC)n Simple_repeat Simple_repeat 1 124 0 2 1264 232 347 33 59 chr9 89029713 89029866 -35046306 - MTEb LTR MaLR -14 365 217 2 1264 407 360 32 41 chr9 89030059 89030279 -35045893 - ID_B1 SINE B4 -5 219 2 2 1264 3988 47 2 18 chr9 89032316 89032812 -35043360 + L1Md_F2 LINE L1 6070 6557 -25 2 1264 261 0 0 0 chr9 89032815 89032844 -35043328 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 3 1264 251 354 12 24 chr9 89033998 89034082 -35042090 - RSINE1 SINE B4 -44 121 39 3 1264 1581 282 88 68 chr9 89034508 89035319 -35040853 + L1_Rod LINE L1 4139 4952 -895 3 1264 4506 37 10 8 chr9 89035319 89035835 -35040337 - L1Md_F3 LINE L1 0 6584 6068 3 1264 1581 282 88 68 chr9 89035835 89036089 -35040083 + L1_Rod LINE L1 4953 5226 -621 3 1264 1374 116 5 0 chr9 89036113 89036303 -35039869 + B2_Mm1t SINE B2 2 192 -1 3 1264 5254 178 60 12 chr9 89036307 89037625 -35038547 + Lx4B LINE L1 962 2335 -3542 3 1264 9549 186 28 73 chr9 89037653 89040943 -35035229 + Lx4B LINE L1 3901 7054 -4 3 1264 326 301 115 38 chr9 89041025 89041208 -35034964 - B4A SINE B4 -81 211 15 3 1264 2769 134 13 9 chr9 89041339 89041804 -35034368 - Lx2 LINE L1 -85 6912 6360 3 1264 341 351 55 80 chr9 89042838 89043039 -35033133 + MTE2b LTR MaLR 62 257 -122 3 1264 2740 79 5 24 chr9 89043091 89043469 -35032703 + L1Md_F2 LINE L1 6212 6582 0 3 1264 6327 56 12 0 chr9 89043508 89044257 -35031915 - L1Md_F3 LINE L1 -1 6583 5826 4 1264 200 143 0 23 chr9 89044792 89044835 -35031337 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1264 1908 115 43 64 chr9 89048560 89048886 -35027286 - ORR1A2 LTR MaLR -8 319 1 4 1264 2161 180 26 8 chr9 89049486 89049873 -35026299 - ORR1B1 LTR MaLR 0 394 1 4 1264 8932 64 14 2 chr9 89049997 89050972 -35025200 + L1_Mur1 LINE L1 3926 4899 -987 4 1264 216 0 0 0 chr9 89050972 89050996 -35025176 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 4 1264 8932 64 14 2 chr9 89050996 89051194 -35024978 + L1_Mur1 LINE L1 4900 5113 -773 4 1264 2610 108 34 21 chr9 89051198 89051571 -35024601 + Lx3_Mus LINE L1 6617 6992 -17 4 1264 243 0 0 0 chr9 89051571 89051598 -35024574 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 4 1264 2610 108 34 21 chr9 89051598 89051612 -35024560 + Lx3_Mus LINE L1 6993 7008 -1 4 1264 216 86 0 0 chr9 89052905 89052940 -35023232 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1264 22 0 0 0 chr9 89053436 89053458 -35022714 + AT_rich Low_complexity Low_complexity 1 22 0 4 1264 507 286 58 31 chr9 89053474 89053665 -35022507 - Lx8 LINE L1 -29 7444 7249 5 1264 2734 245 156 52 chr9 89054246 89055515 -35020657 + RMER1A Other Other 1 1027 -3 5 1264 406 353 13 13 chr9 89055522 89055680 -35020492 - ID_B1 SINE B4 -65 159 2 5 1264 525 319 105 27 chr9 89055890 89056186 -35019986 + Lx8 LINE L1 7097 7415 -58 5 1264 26 50 0 0 chr9 89056214 89056254 -35019918 + AT_rich Low_complexity Low_complexity 1 40 0 5 1264 201 129 0 0 chr9 89056999 89057030 -35019142 + (CAA)n Simple_repeat Simple_repeat 3 33 0 5 1264 354 345 81 29 chr9 89059064 89059237 -35016935 + MTE2b LTR MaLR 36 217 -162 5 1264 342 0 0 0 chr9 89060874 89060912 -35015260 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1264 356 384 47 14 chr9 89061781 89061995 -35014177 - ID_B1 SINE B4 -2 222 2 5 1264 270 276 0 50 chr9 89062221 89062301 -35013871 + B1_Mur3 SINE Alu 5 80 -69 5 1264 459 0 0 0 chr9 89062307 89062358 -35013814 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1264 237 65 0 0 chr9 89062827 89062858 -35013314 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1264 551 51 13 0 chr9 89062858 89062937 -35013235 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1264 489 294 74 60 chr9 89064199 89064416 -35011756 + RLTR33 LTR ERVK 444 663 -15 6 1264 368 319 26 0 chr9 89064594 89064710 -35011462 - RSINE1 SINE B4 -45 120 2 6 1264 567 0 0 0 chr9 89067136 89067199 -35008973 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1264 228 381 6 58 chr9 89067820 89067976 -35008196 - ID_B1 SINE B4 -63 161 14 6 1264 357 242 127 16 chr9 89068205 89068278 -35007894 + B1_Mur4 SINE Alu 10 94 -56 6 1264 546 98 0 0 chr9 89068278 89068360 -35007812 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 6 1264 357 242 127 16 chr9 89068360 89068412 -35007760 + B1_Mur4 SINE Alu 95 148 -2 6 1264 203 156 0 0 chr9 89070424 89070456 -35005716 + T-rich Low_complexity Low_complexity 5 36 0 6 1264 1026 107 0 0 chr9 89072310 89072450 -35003722 + B1_Mus2 SINE Alu 1 140 -7 7 1264 528 93 0 0 chr9 89072450 89072525 -35003647 + (GAAA)n Simple_repeat Simple_repeat 1 75 0 7 1264 1117 230 22 4 chr9 89072963 89073194 -35002978 + ORR1D1 LTR MaLR 140 374 0 7 1264 1723 247 26 38 chr9 89073254 89073750 -35002422 - RLTR11A2 LTR ERVK -21 506 17 7 1264 21 36 0 0 chr9 89073783 89073811 -35002361 + AT_rich Low_complexity Low_complexity 1 28 0 7 1264 241 316 164 23 chr9 89074989 89075209 -35000963 - L2 LINE L2 -1430 1989 1739 7 1264 257 242 109 36 chr9 89075608 89075745 -35000427 + L1_Mur3 LINE L1 4213 4359 -1521 7 1264 1529 132 8 0 chr9 89075765 89076007 -35000165 + L1_Mus2 LINE L1 6037 6280 -286 7 1264 613 115 0 37 chr9 89076007 89076115 -35000057 + L1_Mus2 LINE L1 6462 6565 -1 7 1264 945 302 40 102 chr9 89076122 89076391 -34999781 + L1_Mur3 LINE L1 4404 4640 -1503 7 1264 4002 73 88 7 chr9 89076391 89076967 -34999205 - L1_Mus4 LINE L1 -1 6635 6013 7 1264 1381 308 47 76 chr9 89076967 89078234 -34997938 + L1_Mur3 LINE L1 4597 5868 -12 7 1264 243 0 0 0 chr9 89078626 89078653 -34997519 + (TTG)n Simple_repeat Simple_repeat 1 27 0 8 1264 224 320 76 19 chr9 89079120 89079225 -34996947 - MIRm SINE MIR -6 270 160 8 1264 372 119 34 0 chr9 89079630 89079689 -34996483 + Lx7 LINE L1 7052 7112 -584 8 1264 231 208 25 25 chr9 89079733 89079812 -34996360 + T-rich Low_complexity Low_complexity 1 79 0 8 1264 475 297 61 83 chr9 89080041 89080269 -34995903 - RMER12 LTR ERVK 0 1322 1100 8 1264 6952 79 11 5 chr9 89080417 89081675 -34994497 + L1_Mus1 LINE L1 5306 6567 0 8 1264 33208 139 34 80 chr9 89081831 89083127 -34993045 + L1Md_F3 LINE L1 411 1635 -4248 8 1264 2403 93 164 0 chr9 89083127 89083535 -34992637 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1264 33208 44 4 2 chr9 89083535 89087476 -34988696 + L1Md_F3 LINE L1 1636 5586 -297 8 1264 7954 42 10 0 chr9 89087476 89088449 -34987723 + L1Md_F3 LINE L1 5587 6569 -15 8 1264 4682 148 10 20 chr9 89088483 89089296 -34986876 - RLTR22_Mur LTR ERVK -1043 805 1 8 1264 555 43 0 0 chr9 89089452 89089522 -34986650 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 8 1264 189 0 0 0 chr9 89089713 89089734 -34986438 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1264 664 290 64 156 chr9 89089898 89090352 -34985820 + RMER10A LTR ERVL 12 423 -19 9 1264 259 357 111 29 chr9 89092425 89092731 -34983441 - LTR16B2 LTR ERVL -80 382 52 9 1264 597 251 84 45 chr9 89093528 89093707 -34982465 + B3 SINE B2 2 187 -29 9 1264 24 0 0 0 chr9 89094631 89094655 -34981517 + AT_rich Low_complexity Low_complexity 1 24 0 9 1264 1276 101 0 6 chr9 89094844 89095024 -34981148 - B2_Mm2 SINE B2 -15 180 2 9 1264 269 341 0 66 chr9 89095505 89095596 -34980576 + ID_B1 SINE B4 122 206 -18 9 1264 306 0 0 0 chr9 89096792 89096826 -34979346 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 1264 282 29 0 0 chr9 89096826 89096860 -34979312 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1264 311 348 59 25 chr9 89097339 89097575 -34978597 + MIR SINE MIR 3 246 -16 9 1264 272 234 0 49 chr9 89097785 89097866 -34978306 + CT-rich Low_complexity Low_complexity 6 82 0 1 1264 276 238 13 84 chr9 89098066 89098159 -34978013 + PB1 SINE Alu 21 97 -30 1 1264 209 404 29 29 chr9 89098321 89098423 -34977749 + L2b LINE L2 3263 3364 -11 1 1264 184 346 35 61 chr9 89098442 89098556 -34977616 + MIRc SINE MIR 48 158 -110 1 1264 261 0 0 0 chr9 89099057 89099086 -34977086 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1264 186 43 0 0 chr9 89099234 89099257 -34976915 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1264 302 324 108 0 chr9 89099466 89099577 -34976595 - MLT1A1 LTR MaLR -285 123 1 1 1264 584 62 12 0 chr9 89099969 89100050 -34976122 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 1 1264 738 292 38 0 chr9 89100673 89100885 -34975287 + ID_B1 SINE B4 5 224 0 1 1264 362 295 101 0 chr9 89100993 89101122 -34975050 - B1F SINE Alu -1 148 7 1 1264 235 243 84 14 chr9 89101126 89101197 -34974975 + MIRc SINE MIR 83 158 -110 1 1264 456 19 0 0 chr9 89101281 89101334 -34974838 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1264 21 36 0 0 chr9 89101525 89101553 -34974619 + AT_rich Low_complexity Low_complexity 1 28 0 1 1264 358 324 73 59 chr9 89101610 89101819 -34974353 + MER33 DNA MER1_type 31 251 -73 1 1264 1844 157 91 8 chr9 89101819 89101991 -34974181 + ORR1C2 LTR MaLR 3 173 -211 1 1264 294 87 0 0 chr9 89101991 89102037 -34974135 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 1 1264 1844 157 91 8 chr9 89102037 89102217 -34973955 + ORR1C2 LTR MaLR 174 383 -1 1 1264 358 324 73 59 chr9 89102217 89102296 -34973876 + MER33 DNA MER1_type 252 323 -1 1 1264 184 184 0 50 chr9 89103247 89103327 -34972845 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 1 1264 500 292 20 18 chr9 89103563 89103700 -34972472 - ID_B1 SINE B4 -58 166 31 1 1264 401 232 34 52 chr9 89103829 89103962 -34972210 - ORR1E LTR MaLR -224 146 7 1 1264 302 319 8 10 chr9 89103969 89104078 -34972094 - PB1D10 SINE Alu -3 117 10 1 1264 274 262 0 58 chr9 89104028 89104097 -34972075 - ID_B1 SINE B4 -84 140 76 1 1264 350 278 19 62 chr9 89104133 89104344 -34971828 + RMER17C LTR ERVK 45 246 -164 1 1264 384 22 0 0 chr9 89104344 89104389 -34971783 + (TTCTC)n Simple_repeat Simple_repeat 3 47 0 1 1264 234 0 0 0 chr9 89104740 89104766 -34971406 + (TAA)n Simple_repeat Simple_repeat 3 28 0 1 1264 358 302 8 8 chr9 89104875 89104992 -34971180 - MER5A1 DNA MER1_type -2 164 48 1 1264 323 323 20 28 chr9 89105139 89105279 -34970893 - B4A SINE B4 -149 143 2 1 1264 216 0 0 0 chr9 89106449 89106473 -34969699 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1264 872 225 14 32 chr9 89106919 89107135 -34969037 - B3 SINE B2 -2 214 3 1 1264 831 174 145 40 chr9 89107283 89107415 -34968757 - ORR1C2 LTR MaLR 0 384 235 1 1264 351 0 0 0 chr9 89107415 89107454 -34968718 + (CAGG)n Simple_repeat Simple_repeat 4 42 0 1 1264 831 174 145 40 chr9 89107454 89107548 -34968624 - ORR1C2 LTR MaLR -150 234 134 1 1264 1248 266 82 49 chr9 89107554 89108123 -34968049 - RLTR18B LTR ERVK -89 527 69 1 1264 446 369 89 41 chr9 89108178 89108594 -34967578 - HAL1 LINE L1 -1246 1261 826 1 1264 227 259 35 0 chr9 89110339 89110397 -34965775 + 5S rRNA rRNA 16 75 -46 1 1264 352 211 98 27 chr9 89110482 89110594 -34965578 - PB1D9 SINE Alu 0 120 1 1 1264 444 317 84 37 chr9 89111577 89111767 -34964405 - MLT1K LTR MaLR -242 353 155 1 1264 288 0 0 0 chr9 89112040 89112072 -34964100 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1264 269 258 15 0 chr9 89112075 89112141 -34964031 - PB1D10 SINE Alu -10 107 41 1 1264 1020 156 35 20 chr9 89112198 89112395 -34963777 - URR1A DNA MER1_type 0 226 27 1 1264 460 253 200 55 chr9 89112728 89112983 -34963189 - B4A SINE B4 0 292 1 1 1264 492 273 50 7 chr9 89114380 89114520 -34961652 + RSINE1 SINE B4 2 147 -18 1 1264 600 261 65 37 chr9 89116041 89116256 -34959916 - ID_B1 SINE B4 -1 223 3 1 1264 272 300 18 18 chr9 89116265 89116377 -34959795 - PB1D10 SINE Alu -4 113 2 1 1264 832 60 0 0 chr9 89117008 89117124 -34959048 - B1_Mus2 SINE Alu 0 147 32 1 1264 307 208 76 102 chr9 89117051 89117169 -34959003 - RLTR25B LTR ERVK -519 509 395 1 1264 396 239 8 86 chr9 89117343 89117462 -34958710 + B1F1 SINE Alu 1 108 -12 1 1264 200 250 28 0 chr9 89117548 89117620 -34958552 + T-rich Low_complexity Low_complexity 4 77 0 1 1264 562 307 9 47 chr9 89117634 89117846 -34958326 - ID_B1 SINE B4 -2 222 19 1 1264 1028 45 67 0 chr9 89118432 89118566 -34957606 - B1_Mm SINE Alu 0 147 5 1 1264 1344 164 0 0 chr9 89118838 89119057 -34957115 + URR1B DNA MER1_type 2 220 -5 1 1264 198 50 49 24 chr9 89119600 89119641 -34956531 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1264 305 215 13 0 chr9 89119753 89119832 -34956340 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 1 1264 21 57 0 0 chr9 89119916 89119951 -34956221 + AT_rich Low_complexity Low_complexity 1 35 0 1 1264 640 257 104 22 chr9 89120133 89120316 -34955856 + B3A SINE B2 1 198 0 1 1264 189 0 0 0 chr9 89120639 89120660 -34955512 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1264 180 125 0 0 chr9 89120665 89120697 -34955475 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1264 215 387 43 0 chr9 89120720 89120813 -34955359 - B1F1 SINE Alu -52 97 1 1 1264 1026 176 71 9 chr9 89122670 89122882 -34953290 - URR1B DNA MER1_type 0 225 1 1 1264 292 299 135 19 chr9 89123014 89123222 -34952950 - L1MB2 LINE L1 0 6171 5940 1 1264 425 214 0 10 chr9 89123411 89123515 -34952657 + CT-rich Low_complexity Low_complexity 2 104 0 1 1264 411 238 94 40 chr9 89124035 89124184 -34951988 + B4A SINE B4 1 157 -135 1 1264 287 146 0 18 chr9 89124278 89124334 -34951838 + (CATA)n Simple_repeat Simple_repeat 1 55 0 1 1264 340 147 0 26 chr9 89124641 89124718 -34951454 + (CATA)n Simple_repeat Simple_repeat 1 75 0 1 1264 419 263 126 39 chr9 89124743 89124949 -34951223 - RMER15 LTR ERVL 0 575 352 1 1264 190 376 32 0 chr9 89125809 89125902 -34950270 + MIRb SINE MIR 81 176 -92 1 1264 250 216 184 26 chr9 89127623 89127699 -34948473 - RSINE1 SINE B4 -2 163 76 1 1264 1003 251 27 32 chr9 89128355 89128693 -34947479 + RMER5 LTR ERV1 194 529 -5 1 1265 473 71 14 0 chr9 89129528 89129598 -34946574 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 1 1265 688 284 43 0 chr9 89129613 89129821 -34946351 - ID_B1 SINE B4 -6 218 2 1 1265 494 70 14 0 chr9 89131754 89131825 -34944347 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1265 295 250 0 13 chr9 89132338 89132415 -34943757 + Tigger10 DNA Tigger 1215 1290 -553 1 1265 187 236 91 0 chr9 89132572 89132627 -34943545 + L2 LINE L2 61 120 -3299 1 1265 1326 283 61 38 chr9 89132711 89133287 -34942885 - L1MB1 LINE L1 0 6168 5580 1 1265 25 31 0 0 chr9 89135024 89135056 -34941116 + AT_rich Low_complexity Low_complexity 1 32 0 1 1265 22 0 0 0 chr9 89136401 89136423 -34939749 + AT_rich Low_complexity Low_complexity 1 22 0 1 1265 890 288 27 5 chr9 89136776 89136999 -34939173 + MTEb LTR MaLR 1 228 -151 1 1265 378 253 111 79 chr9 89137409 89137598 -34938574 + ORR1E LTR MaLR 158 352 -7 1 1265 1149 250 117 14 chr9 89138218 89138587 -34937585 - Lx8 LINE L1 -235 7238 6832 1 1265 288 77 0 0 chr9 89138608 89138647 -34937525 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1265 496 283 83 5 chr9 89138649 89138841 -34937331 - B3 SINE B2 -6 210 4 1 1265 523 273 21 7 chr9 89138968 89138998 -34937174 + RCHARR1 DNA MER1_type 36 65 -909 1 1265 282 29 0 0 chr9 89138998 89139033 -34937139 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1265 523 273 21 7 chr9 89139033 89139142 -34937030 + RCHARR1 DNA MER1_type 66 176 -798 1 1265 252 224 0 0 chr9 89139163 89139230 -34936942 + CT-rich Low_complexity Low_complexity 1 67 0 1 1265 603 164 82 1 chr9 89139230 89139354 -34936818 - B1_Mur1 SINE Alu -7 142 9 1 1265 232 176 32 32 chr9 89139538 89139632 -34936540 + CT-rich Low_complexity Low_complexity 2 95 0 1 1265 232 344 0 0 chr9 89139642 89139706 -34936466 - ID4 SINE ID -17 66 3 1 1265 351 0 0 0 chr9 89140061 89140100 -34936072 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1265 180 0 0 0 chr9 89140100 89140120 -34936052 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1265 693 224 23 35 chr9 89140124 89140295 -34935877 - B4 SINE B4 -2 290 122 1 1265 214 250 0 0 chr9 89140319 89140363 -34935809 - B4A SINE B4 -247 45 2 1 1265 369 349 87 14 chr9 89140410 89140686 -34935486 - Charlie7 DNA MER1_type -1505 1107 812 1 1265 279 263 119 44 chr9 89142307 89142466 -34933706 - MER3 DNA MER1_type -35 174 4 1 1265 192 179 0 0 chr9 89142717 89142756 -34933416 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1265 552 15 0 0 chr9 89142886 89142951 -34933221 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1265 1744 108 52 0 chr9 89143203 89143490 -34932682 + ORR1B2 LTR MaLR 1 302 -65 1 1265 6007 64 6 2 chr9 89143490 89144338 -34931834 - L1VL4 LINE L1 -2514 1045 194 1 1265 2094 128 55 9 chr9 89145014 89145362 -34930810 + ORR1B2 LTR MaLR 2 365 -2 1 1265 263 313 60 8 chr9 89147417 89147567 -34928605 - MIRb SINE MIR -74 194 36 1 1265 205 304 122 29 chr9 89147710 89147849 -34928323 + MIR SINE MIR 53 211 -57 1 1265 508 274 58 62 chr9 89148228 89148454 -34927718 + RMER15 LTR ERVL 351 575 0 1 1265 1736 193 57 13 chr9 89149279 89149662 -34926510 - MTD LTR MaLR -8 411 12 1 1265 514 262 83 6 chr9 89150271 89150440 -34925732 + B3A SINE B2 1 182 -16 1 1265 3309 83 48 4 chr9 89151322 89151784 -34924388 - RLTR45 LTR ERVK 0 482 1 2 1265 658 317 116 47 chr9 89153819 89154484 -34921688 - L1MEg LINE L1 -4889 1195 485 2 1265 23 54 0 0 chr9 89155410 89155447 -34920725 + AT_rich Low_complexity Low_complexity 1 37 0 2 1265 363 348 35 21 chr9 89155466 89155610 -34920562 - RSINE1 SINE B4 -9 156 11 2 1265 299 329 64 32 chr9 89157657 89157814 -34918358 - MLT2F LTR ERVL -296 367 206 2 1265 247 254 0 0 chr9 89157861 89157916 -34918256 - MLT2F LTR ERVL -582 81 27 2 1265 1027 91 29 0 chr9 89158127 89158302 -34917870 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1265 543 250 18 0 chr9 89158347 89158459 -34917713 - ID_B1 SINE B4 -105 119 6 2 1265 30 27 0 0 chr9 89158477 89158514 -34917658 + AT_rich Low_complexity Low_complexity 1 37 0 2 1265 525 319 0 47 chr9 89158830 89159001 -34917171 - RSINE1 SINE B4 0 165 3 2 1265 688 288 1 6 chr9 89159218 89159449 -34916723 - L1MB2 LINE L1 -133 6035 5808 2 1265 437 224 159 32 chr9 89159496 89159751 -34916421 - L1MB3 LINE L1 -311 5857 5572 2 1265 245 87 14 68 chr9 89159751 89159825 -34916347 + T-rich Low_complexity Low_complexity 1 70 0 2 1265 1215 68 0 0 chr9 89159826 89159974 -34916198 - B1_Mus1 SINE Alu 0 148 1 2 1265 265 269 80 66 chr9 89159987 89160138 -34916034 - L1MB3 LINE L1 -603 5577 5425 2 1265 26 0 0 0 chr9 89161283 89161309 -34914863 + AT_rich Low_complexity Low_complexity 1 26 0 2 1265 222 150 0 0 chr9 89161983 89162023 -34914149 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 2 1265 21 36 0 0 chr9 89162301 89162329 -34913843 + AT_rich Low_complexity Low_complexity 1 28 0 2 1265 322 299 211 10 chr9 89163548 89163747 -34912425 - RMER15 LTR ERVL 0 575 337 2 1265 2030 103 59 3 chr9 89164181 89164501 -34911671 + ORR1A1 LTR MaLR 1 338 -8 2 1265 1026 209 81 0 chr9 89164783 89165095 -34911077 + RMER19B LTR ERVK 3 282 -620 2 1265 2638 157 39 53 chr9 89166376 89166888 -34909284 + Lx2B LINE L1 6491 6995 -5 2 1265 389 53 0 18 chr9 89166947 89167004 -34909168 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1265 693 193 0 0 chr9 89167820 89167960 -34908212 + (TA)n Simple_repeat Simple_repeat 2 141 0 2 1265 229 310 152 22 chr9 89168233 89168411 -34907761 + L2b LINE L2 2932 3132 -243 2 1265 355 373 59 16 chr9 89168867 89169123 -34907049 + LTR16C LTR ERVL 131 397 -92 2 1265 243 0 0 0 chr9 89169738 89169765 -34906407 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1265 1141 68 0 7 chr9 89169880 89170028 -34906144 - B1_Mus2 SINE Alu 0 147 1 2 1265 305 241 38 12 chr9 89171566 89171646 -34904526 + ID SINE ID 2 83 -141 2 1265 469 210 39 46 chr9 89172243 89172330 -34903842 - ID_B1 SINE B4 -93 131 45 2 1265 3072 45 224 2 chr9 89172330 89172749 -34903423 - RLTR1B LTR ERV1 0 512 1 2 1265 469 210 39 46 chr9 89172749 89172791 -34903381 - ID SINE ID -180 44 3 2 1265 333 140 0 0 chr9 89172980 89173037 -34903135 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 2 1265 680 296 19 34 chr9 89173681 89173887 -34902285 - B4 SINE B4 -9 283 81 2 1265 271 307 71 13 chr9 89173933 89174088 -34902084 - RSINE1 SINE B4 0 165 2 2 1265 375 305 86 81 chr9 89174525 89174746 -34901426 + LTR16A1 LTR ERVL 1 222 -234 2 1265 180 167 68 45 chr9 89175695 89175739 -34900433 - L3 LINE CR1 -15 4474 4430 2 1265 198 0 0 0 chr9 89178244 89178266 -34897906 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1265 342 0 0 0 chr9 89178684 89178722 -34897450 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1265 552 228 26 26 chr9 89179121 89179238 -34896934 + B4 SINE B4 176 292 0 2 1265 207 133 0 0 chr9 89179263 89179308 -34896864 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1265 256 329 105 25 chr9 89179325 89179487 -34896685 + ORR1E LTR MaLR 21 195 -164 2 1265 590 277 32 6 chr9 89180017 89180173 -34895999 + MER70A LTR ERVL 313 472 0 2 1265 385 317 14 7 chr9 89180527 89180670 -34895502 + MER20 DNA MER1_type 1 144 -75 2 1265 1807 137 25 43 chr9 89180691 89180991 -34895181 - ORR1A4 LTR MaLR 0 329 36 2 1265 266 146 83 0 chr9 89180991 89181039 -34895133 - ORR1A4-int LTR MaLR -2 1961 1910 2 1265 369 0 0 0 chr9 89181115 89181156 -34895016 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1265 935 218 19 14 chr9 89181839 89182048 -34894124 - B3 SINE B2 0 216 7 2 1265 605 296 20 45 chr9 89184250 89184448 -34891724 - B3A SINE B2 -3 195 3 2 1265 358 260 219 0 chr9 89184873 89185042 -34891130 - Lx2B LINE L1 -7 6993 6788 2 1265 4655 169 36 7 chr9 89185041 89185321 -34890851 + Lx2B LINE L1 5865 6166 -834 2 1265 450 0 0 0 chr9 89185321 89185371 -34890801 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1265 4655 169 36 7 chr9 89185371 89185952 -34890220 + Lx2B LINE L1 6167 6750 -250 2 1265 7637 62 5 20 chr9 89186069 89187051 -34889121 + L1_Mus2 LINE L1 5600 6566 0 2 1265 384 245 85 0 chr9 89187194 89187300 -34888872 + MER20 DNA MER1_type 14 128 -91 2 1265 470 182 11 0 chr9 89187491 89187579 -34888593 - L1_Mur2 LINE L1 -1131 4746 4658 2 1265 674 29 133 0 chr9 89187585 89187690 -34888482 - B1_Mus1 SINE Alu 0 148 30 2 1265 4125 218 37 9 chr9 89187691 89188507 -34887665 + Lx5 LINE L1 6207 7045 -5 2 1265 832 142 228 5 chr9 89188592 89188776 -34887396 + URR1B DNA MER1_type 1 225 0 2 1265 521 281 68 128 chr9 89189468 89189868 -34886304 + MTE2a LTR MaLR 1 376 -3 2 1265 389 248 80 40 chr9 89189916 89190067 -34886105 - Lx6 LINE L1 -1 7459 7303 2 1265 412 152 13 0 chr9 89190497 89190576 -34885596 + B3 SINE B2 137 216 0 2 1265 256 250 152 0 chr9 89190944 89190974 -34885198 - B3 SINE B2 -6 210 167 2 1265 192 77 0 0 chr9 89190974 89191000 -34885172 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1265 378 0 0 0 chr9 89191000 89191041 -34885131 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1265 256 250 152 0 chr9 89191041 89191101 -34885071 - B3 SINE B2 -50 166 107 2 1265 417 302 27 21 chr9 89191179 89191448 -34884724 - L1MA4A LINE L1 -280 6020 5743 2 1265 7785 111 21 56 chr9 89191431 89192801 -34883371 - L1_Mus1 LINE L1 0 6567 5312 2 1265 748 285 100 66 chr9 89193187 89193759 -34882413 - L1_Mus1 LINE L1 -880 5263 4614 2 1265 503 316 65 63 chr9 89193818 89194138 -34882034 + L1M4 LINE L1 4360 4681 -1465 2 1265 252 0 0 0 chr9 89194138 89194166 -34882006 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1265 503 316 65 63 chr9 89194166 89194307 -34881865 + L1M4 LINE L1 4682 4822 -1324 2 1265 378 295 57 11 chr9 89194475 89194650 -34881522 + RLTR11B LTR ERVK 94 276 -177 2 1265 323 288 16 16 chr9 89194623 89194750 -34881422 + RLTR11B LTR ERVK 205 331 -122 2 1265 508 223 52 37 chr9 89194746 89194931 -34881241 - RLTR11A2 LTR ERVK -261 192 2 2 1265 311 305 72 36 chr9 89195151 89195345 -34880827 + L1M4 LINE L1 4826 5026 -1120 2 1265 7412 51 8 4 chr9 89195376 89196288 -34879884 - L1Md_F2 LINE L1 -12 6570 5656 2 1265 1120 276 16 58 chr9 89196324 89196644 -34879528 + ORR1D2 LTR MaLR 7 310 -60 2 1265 604 29 0 111 chr9 89196644 89196761 -34879411 - L1Md_F2 LINE L1 0 6582 6479 2 1265 1120 276 16 58 chr9 89196761 89196820 -34879352 + ORR1D2 LTR MaLR 311 369 -1 2 1265 207 243 46 52 chr9 89197064 89197162 -34879010 + MIR SINE MIR 82 191 -77 2 1265 618 308 21 11 chr9 89197366 89197553 -34878619 - Lx6 LINE L1 -27 7433 7245 2 1265 1041 261 20 79 chr9 89197803 89198157 -34878015 - MTE2b LTR MaLR -41 338 6 2 1265 192 97 0 0 chr9 89199346 89199377 -34876795 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1265 3251 63 0 5 chr9 89201809 89202207 -34873965 + MTA_Mm LTR MaLR 1 396 0 2 1265 886 155 168 21 chr9 89205213 89205404 -34870768 - RMER1A Other Other -6 1024 806 2 1265 239 293 99 129 chr9 89207566 89207930 -34868242 + ORR1D1 LTR MaLR 18 370 -4 2 1265 30 0 0 0 chr9 89207997 89208027 -34868145 + AT_rich Low_complexity Low_complexity 1 30 0 2 1265 411 228 52 42 chr9 89208039 89208135 -34868037 - B1F2 SINE Alu -52 97 1 2 1265 2977 62 52 15 chr9 89208876 89209282 -34866890 - BGLII LTR ERVK 0 421 1 2 1265 226 246 80 56 chr9 89210603 89210728 -34865444 - MamRep564 Unknown Unknown -132 225 98 2 1265 335 305 69 40 chr9 89210782 89210956 -34865216 - MLT1I LTR MaLR 0 411 233 2 1265 580 291 166 34 chr9 89211224 89211694 -34864478 - L1ME1 LINE L1 -189 5975 5464 2 1265 225 0 0 0 chr9 89211934 89211959 -34864213 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1265 302 67 0 22 chr9 89211991 89212037 -34864135 + (TTTTC)n Simple_repeat Simple_repeat 1 45 0 2 1265 1170 82 0 0 chr9 89212037 89212184 -34863988 - B1_Mus2 SINE Alu 0 147 1 2 1265 443 298 8 15 chr9 89213394 89213527 -34862645 - MER5A1 DNA MER1_type -34 132 1 2 1265 1779 185 123 3 chr9 89214435 89214809 -34861363 - MTD LTR MaLR 0 419 1 2 1265 270 320 0 0 chr9 89215770 89215867 -34860305 - MER53 DNA hAT -95 98 2 2 1265 8381 46 1 0 chr9 89216199 89217873 -34858299 - L1Md_F2 LINE L1 -1 6581 4907 2 1265 488 281 15 0 chr9 89217946 89218081 -34858091 + MER58B DNA MER1_type 200 336 -5 2 1265 10089 115 22 34 chr9 89218731 89221358 -34854814 - Lx3B LINE L1 0 6973 4384 2 1265 21 0 0 0 chr9 89221358 89221379 -34854793 + AT_rich Low_complexity Low_complexity 1 21 0 2 1265 204 170 0 0 chr9 89221385 89221438 -34854734 + CT-rich Low_complexity Low_complexity 2 54 0 2 1265 1793 123 23 36 chr9 89221774 89222227 -34853945 + RLTR1B LTR ERV1 135 624 0 2 1265 256 270 39 29 chr9 89222290 89222393 -34853779 + MIRb SINE MIR 117 220 -48 2 1265 228 296 19 0 chr9 89222989 89223043 -34853129 - MLT1H2 LTR MaLR -145 344 290 2 1265 1369 241 82 45 chr9 89223197 89223601 -34852571 - MTD LTR MaLR 0 419 1 2 1265 247 283 96 76 chr9 89224713 89224870 -34851302 + L2a LINE L2 3225 3384 -42 2 1265 451 320 30 30 chr9 89225046 89225246 -34850926 + MamRep605 Unknown Unknown 93 292 -584 2 1265 438 296 200 0 chr9 89225577 89225712 -34850460 + B3A SINE B2 1 162 -36 2 1265 1899 234 48 28 chr9 89225735 89226196 -34849976 - RMER19C LTR ERVK 0 611 142 3 1265 180 163 0 0 chr9 89226243 89226286 -34849886 + CT-rich Low_complexity Low_complexity 1 43 0 3 1265 285 306 73 16 chr9 89227462 89227585 -34848587 + RMER15 LTR ERVL 336 465 -110 3 1265 353 355 53 26 chr9 89227870 89228136 -34848036 + MARNA DNA Mariner 266 538 -48 3 1265 314 278 99 11 chr9 89228392 89228483 -34847689 + MER5B DNA MER1_type 1 99 -79 3 1265 213 121 0 0 chr9 89228679 89228712 -34847460 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1265 405 0 0 0 chr9 89228757 89228802 -34847370 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1265 1480 251 105 17 chr9 89229403 89229986 -34846186 - L1MA8 LINE L1 -144 6147 5514 3 1265 201 94 0 0 chr9 89230000 89230032 -34846140 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 1265 430 290 60 22 chr9 89230033 89230167 -34846005 - ID_B1 SINE B4 -2 222 84 3 1265 241 89 44 0 chr9 89230268 89230313 -34845859 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 3 1265 548 266 14 20 chr9 89230335 89230481 -34845691 - B3A SINE B2 -53 145 1 3 1265 3617 153 75 79 chr9 89230589 89231362 -34844810 + RMER19B LTR ERVK 1 770 -132 3 1265 441 66 0 0 chr9 89231362 89231423 -34844749 + (T)n Simple_repeat Simple_repeat 1 61 0 3 1265 8652 2 0 0 chr9 89231430 89232843 -34843329 - L1Md_A LINE L1 0 6582 5170 3 1265 714 168 14 20 chr9 89232844 89232990 -34843182 + RMER19B LTR ERVK 758 902 0 3 1265 281 319 14 0 chr9 89233025 89233097 -34843075 + ID SINE ID 6 78 -146 3 1265 978 138 0 0 chr9 89233432 89233592 -34842580 + (TTC)n Simple_repeat Simple_repeat 3 162 0 3 1265 440 302 22 37 chr9 89233759 89233893 -34842279 - MIRb SINE MIR -47 221 90 3 1265 23 33 0 0 chr9 89233947 89233977 -34842195 + AT_rich Low_complexity Low_complexity 1 30 0 3 1265 3139 54 18 0 chr9 89233977 89234369 -34841803 - L1_Mus1 LINE L1 -2 6565 6167 3 1265 28394 4 0 0 chr9 89234578 89239166 -34837006 + L1Md_A LINE L1 7 4594 -1289 3 1265 2991 6 0 0 chr9 89239166 89239516 -34836656 + L1Md_A LINE L1 5237 5586 -297 3 1265 9093 1 0 0 chr9 89239516 89240512 -34835660 + L1Md_A LINE L1 5587 6582 0 3 1265 253 217 0 0 chr9 89240758 89240818 -34835354 + T-rich Low_complexity Low_complexity 5 64 0 3 1265 28 29 0 0 chr9 89240962 89240997 -34835175 + AT_rich Low_complexity Low_complexity 1 35 0 3 1265 225 94 0 0 chr9 89241153 89241185 -34834987 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1265 204 274 0 31 chr9 89241185 89241249 -34834923 + (TATG)n Simple_repeat Simple_repeat 1 62 0 3 1265 366 85 0 0 chr9 89241743 89241802 -34834370 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 3 1265 201 329 58 64 chr9 89241961 89242133 -34834039 - L2 LINE L2 -612 2807 2637 3 1265 2883 53 0 3 chr9 89242144 89242524 -34833648 - L1_Mus1 LINE L1 -521 6046 5668 3 1265 3561 58 62 0 chr9 89242524 89242976 -34833196 + L1_Mus1 LINE L1 6087 6566 -1 3 1265 21 36 0 0 chr9 89243446 89243474 -34832698 + AT_rich Low_complexity Low_complexity 1 28 0 3 1265 253 231 200 0 chr9 89243554 89243619 -34832553 + ID SINE ID 5 82 -142 3 1265 273 220 66 33 chr9 89243562 89243623 -34832549 + ID4_ SINE ID 21 83 0 3 1265 183 357 126 29 chr9 89243633 89244046 -34832126 - L2 LINE L2 -1272 2147 1695 3 1265 321 335 16 5 chr9 89244815 89245001 -34831171 + L1M5 LINE L1 4889 5076 -1070 3 1265 272 244 22 11 chr9 89245071 89245162 -34831010 + L1M5 LINE L1 5688 5779 -345 3 1265 249 386 18 0 chr9 89245270 89245384 -34830788 + MIR SINE MIR 119 234 -28 3 1265 2804 73 0 100 chr9 89245399 89245646 -34830526 - MTA_Mm LTR MaLR 0 396 178 3 1265 1208 54 0 7 chr9 89245646 89245795 -34830377 + B1_Mus1 SINE Alu 1 148 0 3 1265 2804 73 0 100 chr9 89245795 89245987 -34830185 - MTA_Mm LTR MaLR -219 177 1 3 1265 7825 83 19 5 chr9 89245987 89247069 -34829103 - MTA_Mm-int LTR MaLR 0 1098 1 3 1265 2971 68 28 8 chr9 89247069 89247457 -34828715 - MTA_Mm LTR MaLR 0 396 1 3 1265 342 284 0 0 chr9 89247504 89247585 -34828587 + ID4 SINE ID 3 83 0 3 1265 245 100 0 0 chr9 89247911 89247951 -34828221 - RLTR31_Mm LTR ERVK -215 346 307 3 1265 2260 8 0 0 chr9 89247951 89248214 -34827958 + L1Md_A LINE L1 5324 5586 -297 3 1265 9093 1 0 0 chr9 89248214 89249210 -34826962 + L1Md_A LINE L1 5587 6582 0 3 1265 253 217 0 0 chr9 89249456 89249516 -34826656 + T-rich Low_complexity Low_complexity 5 64 0 3 1265 28 29 0 0 chr9 89249660 89249695 -34826477 + AT_rich Low_complexity Low_complexity 1 35 0 3 1265 225 94 0 0 chr9 89249851 89249883 -34826289 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1265 204 274 0 31 chr9 89249883 89249947 -34826225 + (TATG)n Simple_repeat Simple_repeat 1 62 0 3 1265 366 85 0 0 chr9 89250441 89250500 -34825672 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 3 1265 201 329 58 64 chr9 89250659 89250831 -34825341 - L2 LINE L2 -612 2807 2637 3 1265 2883 53 0 3 chr9 89250842 89251222 -34824950 - L1_Mus1 LINE L1 -521 6046 5668 3 1265 3561 58 62 0 chr9 89251222 89251674 -34824498 + L1_Mus1 LINE L1 6087 6566 -1 3 1265 21 36 0 0 chr9 89252144 89252172 -34824000 + AT_rich Low_complexity Low_complexity 1 28 0 3 1265 253 231 200 0 chr9 89252252 89252317 -34823855 + ID SINE ID 5 82 -142 3 1265 273 220 66 33 chr9 89252260 89252321 -34823851 + ID4_ SINE ID 21 83 0 3 1265 183 357 126 29 chr9 89252331 89252744 -34823428 - L2 LINE L2 -1272 2147 1695 3 1265 321 335 16 5 chr9 89253513 89253699 -34822473 + L1M5 LINE L1 4889 5076 -1070 3 1265 272 244 22 11 chr9 89253769 89253860 -34822312 + L1M5 LINE L1 5688 5779 -345 3 1265 249 386 18 0 chr9 89253968 89254082 -34822090 + MIR SINE MIR 119 234 -28 3 1265 2804 73 0 100 chr9 89254097 89254344 -34821828 - MTA_Mm LTR MaLR 0 396 178 3 1265 1208 54 0 7 chr9 89254344 89254493 -34821679 + B1_Mus1 SINE Alu 1 148 0 3 1265 2804 73 0 100 chr9 89254493 89254685 -34821487 - MTA_Mm LTR MaLR -219 177 1 3 1265 7825 83 19 5 chr9 89254685 89255767 -34820405 - MTA_Mm-int LTR MaLR 0 1098 1 3 1265 2971 68 28 8 chr9 89255767 89256155 -34820017 - MTA_Mm LTR MaLR 0 396 1 3 1265 342 284 0 0 chr9 89256202 89256283 -34819889 + ID4 SINE ID 3 83 0 3 1265 1909 132 14 29 chr9 89256609 89256960 -34819212 - RLTR31_Mm LTR ERVK -215 346 1 3 1265 2069 192 30 198 chr9 89257140 89257874 -34818298 + RMER19C LTR ERVK 1 611 0 3 1265 784 155 42 0 chr9 89258044 89258186 -34817986 + URR1A DNA MER1_type 79 226 0 3 1265 188 344 16 0 chr9 89258221 89258282 -34817890 + L3 LINE CR1 3978 4039 -450 3 1265 206 0 69 0 chr9 89258413 89258442 -34817730 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 3 1265 277 307 96 34 chr9 89258865 89259104 -34817068 + L1MEd LINE L1 950 1203 -4916 3 1265 417 306 48 55 chr9 89259173 89259261 -34816911 - L1M5 LINE L1 -483 5696 5608 3 1265 280 295 105 0 chr9 89259261 89259356 -34816816 - PB1D10 SINE Alu -8 109 5 3 1265 417 306 48 55 chr9 89259356 89259558 -34816614 - L1M5 LINE L1 -572 5607 5408 3 1265 447 297 67 29 chr9 89259588 89259827 -34816345 - L1MB7 LINE L1 -29 6155 5908 3 1265 261 242 21 21 chr9 89259901 89259998 -34816174 - L1M4 LINE L1 -1676 4464 4368 3 1266 541 284 91 71 chr9 89260034 89260398 -34815774 - L1M4 LINE L1 -1779 4367 3997 3 1266 213 154 0 0 chr9 89260404 89260443 -34815729 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1266 400 306 60 37 chr9 89260453 89260721 -34815451 - L1MC LINE L1 -1771 4375 4102 3 1266 294 260 21 0 chr9 89260739 89260835 -34815337 - L1M4 LINE L1 -2098 4048 3951 3 1266 272 42 0 78 chr9 89260835 89260865 -34815307 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1266 1170 48 0 13 chr9 89260865 89261014 -34815158 - B1_Mus2 SINE Alu 0 147 1 3 1266 272 42 0 78 chr9 89261014 89261034 -34815138 + (T)n Simple_repeat Simple_repeat 1 17 0 3 1266 667 245 46 17 chr9 89261084 89261318 -34814854 - Lx4B LINE L1 -2 7056 6718 3 1266 531 258 124 0 chr9 89261318 89261527 -34814645 - L1MC LINE L1 -2240 3906 3672 3 1266 705 282 93 90 chr9 89261537 89261915 -34814257 + MTEa LTR MaLR 1 379 0 3 1266 923 294 94 10 chr9 89261937 89262246 -34813926 + MTE-int LTR MaLR 53 387 -1193 3 1266 2775 177 9 88 chr9 89262253 89262810 -34813362 - RMER15 LTR ERVL -2 573 61 3 1266 213 119 0 0 chr9 89262827 89262869 -34813303 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1266 274 240 0 0 chr9 89262869 89262919 -34813253 - RMER15 LTR ERVL -525 50 1 3 1266 570 332 75 39 chr9 89262919 89263178 -34812994 + MTE-int LTR MaLR 388 656 -924 3 1266 216 208 34 125 chr9 89263619 89263707 -34812465 + MIR3 SINE MIR 101 180 -28 3 1266 235 186 57 0 chr9 89264191 89264261 -34811911 - Lx9 LINE L1 -9 7635 7562 3 1266 844 155 6 6 chr9 89264261 89264423 -34811749 + CT-rich Low_complexity Low_complexity 2 163 0 3 1266 195 129 0 0 chr9 89264431 89264462 -34811710 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1266 1460 170 44 13 chr9 89264465 89264763 -34811409 - Lx9 LINE L1 -179 7465 7159 3 1266 501 176 98 0 chr9 89264757 89264859 -34811313 - Lx9 LINE L1 -1066 6578 6467 3 1266 3151 142 7 9 chr9 89264842 89265383 -34810789 - L1_Mm LINE L1 -248 5635 5096 3 1266 6787 55 55 2 chr9 89265381 89266319 -34809853 + L1_Mus3 LINE L1 5648 6635 -3 3 1266 801 231 20 10 chr9 89266322 89266523 -34809649 - Lx9 LINE L1 -1153 6491 6289 3 1266 1874 166 38 6 chr9 89266570 89266915 -34809257 - RLTR15 LTR ERVK 0 359 4 3 1266 210 147 0 0 chr9 89267019 89267053 -34809119 + (ATG)n Simple_repeat Simple_repeat 2 35 0 3 1266 1892 269 150 38 chr9 89267253 89268275 -34807897 - Charlie2a DNA MER1_type -755 2106 971 3 1266 257 329 151 20 chr9 89268927 89269073 -34807099 + Charlie8 DNA MER1_type 81 245 -2183 3 1266 367 315 92 8 chr9 89269549 89269680 -34806492 + MER58C DNA MER1_type 74 215 0 3 1266 203 405 111 32 chr9 89269908 89269974 -34806198 + L2a LINE L2 3004 3070 -305 3 1266 204 40 0 0 chr9 89269974 89269999 -34806173 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1266 293 345 95 28 chr9 89269999 89270274 -34805898 + L2a LINE L2 3071 3402 -24 3 1266 325 319 23 69 chr9 89272668 89272843 -34803329 + L1MD2 LINE L1 6134 6300 -59 3 1266 1664 176 25 64 chr9 89272844 89273281 -34802891 + MERVL_2A-int LTR ERVL 5340 5759 -2 3 1266 2689 192 4 0 chr9 89273287 89273740 -34802432 + MT2A LTR ERVL 3 457 -76 3 1266 24 0 0 0 chr9 89273778 89273802 -34802370 + AT_rich Low_complexity Low_complexity 1 24 0 3 1266 899 266 105 37 chr9 89273813 89274137 -34802035 - RLTR14 LTR ERV1 -33 349 4 3 1266 1774 211 134 14 chr9 89274160 89274651 -34801521 + MERVL_2A-int LTR ERVL 1 550 -5211 3 1266 288 175 17 34 chr9 89274660 89274719 -34801453 + PB1D9 SINE Alu 2 59 -61 3 1266 614 152 25 0 chr9 89274721 89274839 -34801333 + (CAGAGA)n Simple_repeat Simple_repeat 4 124 0 3 1266 547 223 0 0 chr9 89274839 89274942 -34801230 + B1_Mur4 SINE Alu 42 144 -6 3 1266 23 54 0 0 chr9 89274955 89274992 -34801180 + AT_rich Low_complexity Low_complexity 1 37 0 3 1266 381 185 130 0 chr9 89274992 89275084 -34801088 + MERVL_2A-int LTR ERVL 552 655 -5106 3 1266 839 243 94 27 chr9 89275135 89275359 -34800813 + ORR1D1 LTR MaLR 135 373 -1 3 1266 1119 48 13 20 chr9 89276311 89276460 -34799712 - B1_Mus1 SINE Alu 0 148 1 3 1266 531 187 0 0 chr9 89276710 89276876 -34799296 + CT-rich Low_complexity Low_complexity 1 166 0 3 1266 228 306 0 27 chr9 89276908 89276982 -34799190 - tRNA-Ala-GCY_ tRNA tRNA 0 75 4 3 1266 3700 100 30 0 chr9 89278147 89278677 -34797495 + L1_Mus4 LINE L1 6090 6635 -1 4 1266 382 269 28 121 chr9 89278702 89278861 -34797311 + MLT1A0 LTR MaLR 72 213 -152 4 1266 655 319 24 12 chr9 89278861 89279026 -34797146 + B3A SINE B2 2 168 -30 4 1266 288 53 0 0 chr9 89279026 89279064 -34797108 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1266 247 312 77 128 chr9 89279064 89279093 -34797079 + B2_Mm2 SINE B2 161 186 -9 4 1266 334 313 17 17 chr9 89279095 89279212 -34796960 + MLT1A0 LTR MaLR 292 408 0 4 1266 290 324 19 38 chr9 89279240 89279346 -34796826 - RSINE1 SINE B4 -55 110 7 4 1266 23 33 0 0 chr9 89279530 89279560 -34796612 + AT_rich Low_complexity Low_complexity 1 30 0 4 1266 362 335 56 43 chr9 89279791 89279836 -34796336 - Tigger5 DNA MER2_type -2233 173 135 4 1266 2066 142 97 6 chr9 89279836 89280197 -34795975 - ORR1B1 LTR MaLR 0 394 1 4 1266 362 335 56 43 chr9 89280197 89280313 -34795859 - Tigger5 DNA MER2_type -2272 134 10 4 1266 369 241 67 33 chr9 89281026 89281044 -34795128 - CYRA11_Mm Unknown Y-chromosome -303 314 220 4 1266 902 81 0 0 chr9 89281044 89281167 -34795005 + URR1B DNA MER1_type 103 225 0 4 1266 224 333 0 13 chr9 89281391 89281467 -34794705 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1266 245 295 36 109 chr9 89281516 89281653 -34794519 - B1F2 SINE Alu -22 127 1 4 1266 421 290 69 41 chr9 89281653 89281734 -34794438 - B4A SINE B4 -142 82 1 4 1266 566 292 65 30 chr9 89283337 89283538 -34792634 + B3 SINE B2 2 209 -7 4 1266 22 56 0 0 chr9 89283539 89283575 -34792597 + AT_rich Low_complexity Low_complexity 1 36 0 4 1266 235 254 67 60 chr9 89283858 89283992 -34792180 + L1M2 LINE L1 1869 2003 -4846 4 1266 302 342 55 22 chr9 89284162 89284527 -34791645 + L1_Rod LINE L1 1556 1932 -3915 4 1266 497 305 0 37 chr9 89284728 89284864 -34791308 + ORR1E LTR MaLR 3 133 -226 4 1266 260 27 27 0 chr9 89284865 89284902 -34791270 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1266 1110 96 11 11 chr9 89285094 89285274 -34790898 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1266 1139 304 41 40 chr9 89285396 89286120 -34790052 + L1M2 LINE L1 2963 3687 -3158 4 1266 412 297 37 66 chr9 89286191 89286436 -34789736 + L1M2 LINE L1 3696 3946 -2899 4 1266 387 0 0 0 chr9 89286436 89286479 -34789693 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1266 412 297 37 66 chr9 89286479 89286641 -34789531 + L1M2 LINE L1 3947 4091 -2754 4 1266 355 308 92 11 chr9 89286677 89286851 -34789321 + L1MC4a LINE L1 5299 5486 -688 4 1266 309 337 176 10 chr9 89286859 89287063 -34789109 + HAL1-3A_ME LINE L1 1959 2196 -662 4 1266 298 158 42 0 chr9 89287072 89287167 -34789005 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 4 1266 789 120 0 0 chr9 89287182 89287324 -34788848 + (GA)n Simple_repeat Simple_repeat 1 142 0 4 1266 624 294 20 0 chr9 89287512 89287658 -34788514 - RSINE1 SINE B4 -15 150 2 4 1266 460 260 56 56 chr9 89287677 89287909 -34788263 + L1MA4 LINE L1 5708 5939 -361 4 1266 231 114 0 0 chr9 89288651 89288686 -34787486 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1266 666 201 65 36 chr9 89288959 89289098 -34787074 - B1_Mur1 SINE Alu -5 144 2 4 1266 233 279 104 31 chr9 89289101 89289293 -34786879 + L1MC4a LINE L1 5771 5976 -1906 4 1266 2299 133 65 2 chr9 89289391 89289806 -34786366 - BGLII_B LTR ERVK 0 441 1 4 1266 1523 136 49 8 chr9 89289807 89290126 -34786046 - MYSERV16_I-int LTR ERVK -45 2281 1993 4 1266 3481 89 20 0 chr9 89290164 89290656 -34785516 + L1_Mus3 LINE L1 6135 6636 -2 4 1266 1665 166 64 62 chr9 89290678 89291051 -34785121 - ORR1C1 LTR MaLR -1 377 4 4 1266 313 294 0 0 chr9 89291189 89291257 -34784915 + ID4 SINE ID 9 76 -7 4 1266 22 0 0 0 chr9 89291347 89291369 -34784803 + AT_rich Low_complexity Low_complexity 1 22 0 4 1266 1245 251 102 37 chr9 89292025 89292435 -34783737 - MER34 LTR ERV1 0 542 106 4 1266 186 191 0 0 chr9 89292444 89292486 -34783686 + GA-rich Low_complexity Low_complexity 1 42 0 4 1266 507 212 42 17 chr9 89292487 89292508 -34783664 - MER34 LTR ERV1 -419 123 104 4 1266 1080 111 0 0 chr9 89292508 89292670 -34783502 + (GAA)n Simple_repeat Simple_repeat 1 162 0 4 1266 507 212 42 17 chr9 89292670 89292768 -34783404 - MER34 LTR ERV1 -439 103 1 4 1266 361 316 0 21 chr9 89292926 89293023 -34783149 - RSINE1 SINE B4 -2 163 69 4 1266 3086 118 6 2 chr9 89293291 89293759 -34782413 - Lx2 LINE L1 0 6997 6528 4 1266 589 306 35 0 chr9 89294096 89294295 -34781877 - MER89 LTR ERV1 0 559 354 4 1266 310 284 29 29 chr9 89294567 89294705 -34781467 + MER104 DNA Tc2 41 178 -3 4 1266 440 274 64 77 chr9 89294838 89295071 -34781101 + RMER5 LTR ERV1 14 243 -291 4 1266 454 272 26 40 chr9 89295163 89295336 -34780836 + B1_Mur1 SINE Alu 2 142 -5 4 1266 820 266 99 32 chr9 89295444 89295797 -34780375 - MTD LTR MaLR -20 399 6 4 1266 270 0 0 0 chr9 89295861 89295891 -34780281 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1266 766 276 22 36 chr9 89295891 89296116 -34780056 - ID_B1 SINE B4 0 224 3 4 1266 544 351 52 26 chr9 89296229 89296460 -34779712 + B4A SINE B4 1 237 -55 4 1266 328 259 13 19 chr9 89296566 89296660 -34779512 + MER58C DNA MER1_type 116 211 -4 4 1266 362 335 125 5 chr9 89296661 89296877 -34779295 + MIRc SINE MIR 13 254 -14 4 1266 378 0 0 0 chr9 89297123 89297165 -34779007 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1266 236 288 0 48 chr9 89297571 89297633 -34778539 + MER102a DNA MER1_type 3 61 -269 4 1266 310 244 131 25 chr9 89298506 89298628 -34777544 - Charlie4a DNA MER1_type -15 493 359 4 1266 637 287 58 17 chr9 89298641 89298882 -34777290 - Charlie4a DNA MER1_type -206 302 52 4 1266 785 63 18 0 chr9 89300032 89300143 -34776029 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 4 1266 33252 75 3 0 chr9 89300151 89306623 -34769549 - L1Md_F2 LINE L1 -15 6570 101 4 1266 287 100 0 0 chr9 89306601 89306641 -34769531 - L1Md_F2 LINE L1 -6393 226 187 4 1266 1436 239 8 22 chr9 89307299 89307658 -34768514 - Lx5 LINE L1 -3 7047 6694 4 1266 391 330 77 18 chr9 89307731 89307953 -34768219 + MIR SINE MIR 13 247 -15 4 1266 3258 43 5 0 chr9 89308021 89308415 -34767757 - MTA_Mm LTR MaLR 0 396 1 4 1266 279 373 107 6 chr9 89308434 89308612 -34767560 - MLT1L LTR MaLR 0 610 415 4 1266 182 37 37 0 chr9 89309338 89309365 -34766807 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1266 423 0 0 0 chr9 89309801 89309848 -34766324 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1266 3803 91 155 48 chr9 89310700 89310769 -34765403 - RLTR19B LTR ERVK 0 715 657 4 1266 1148 62 7 0 chr9 89310769 89310915 -34765257 + B1_Mus1 SINE Alu 2 148 0 4 1266 3803 91 155 48 chr9 89310915 89311491 -34764681 - RLTR19B LTR ERVK -59 656 1 4 1266 623 360 5 26 chr9 89312024 89312218 -34763954 + B4A SINE B4 22 211 -81 4 1266 270 164 0 0 chr9 89312256 89312311 -34763861 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 4 1266 307 210 63 16 chr9 89312313 89312376 -34763796 + B4A SINE B4 221 286 -6 4 1266 34418 62 3 3 chr9 89312625 89318822 -34757350 - L1Md_F3 LINE L1 -2 6582 386 4 1266 444 240 21 10 chr9 89318841 89318938 -34757234 - RSINE1 SINE B4 -60 105 8 4 1266 595 346 81 36 chr9 89318973 89319392 -34756780 - LTR40a LTR ERVL -7 512 75 4 1266 582 320 55 24 chr9 89319873 89320203 -34755969 - HERVL40-int LTR ERVL -1205 4325 3986 4 1266 600 342 98 10 chr9 89320454 89320853 -34755319 - HERVL40-int LTR ERVL -1919 3611 3178 4 1266 693 66 0 0 chr9 89320867 89320958 -34755214 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 4 1266 270 81 0 0 chr9 89320965 89321002 -34755170 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 4 1266 990 239 38 8 chr9 89321002 89321238 -34754934 - Lx5 LINE L1 -16 7034 6792 4 1266 2151 94 30 61 chr9 89321239 89321568 -34754604 + ORR1A2 LTR MaLR 1 319 -8 4 1266 1115 222 3 95 chr9 89321573 89321867 -34754305 - Lx5 LINE L1 -256 6794 6528 4 1266 609 132 220 170 chr9 89321867 89322067 -34754105 + ORR1A3-int LTR MaLR 549 758 -1205 4 1266 1258 188 55 66 chr9 89321920 89322176 -34753996 + MT2B LTR ERVL 35 287 -314 4 1266 1066 217 48 45 chr9 89322076 89322409 -34753763 + ORR1A3-int LTR MaLR 674 1007 -956 4 1266 586 159 61 153 chr9 89322352 89322515 -34753657 + RLTR25B LTR ERVK 618 765 -263 4 1266 457 224 41 0 chr9 89322510 89322608 -34753564 + RLTR25B LTR ERVK 924 1025 -3 4 1266 293 331 30 8 chr9 89322696 89322827 -34753345 - HERVL40-int LTR ERVL -2532 2998 2865 4 1266 384 277 26 9 chr9 89322847 89322960 -34753212 - HERVL40-int LTR ERVL -2732 2798 2684 4 1266 253 294 25 25 chr9 89322974 89323096 -34753076 + L1MD1 LINE L1 6109 6230 -12 4 1266 267 324 0 0 chr9 89323140 89323214 -34752958 - HERVL40-int LTR ERVL -2882 2648 2575 4 1266 544 281 36 44 chr9 89323292 89323481 -34752691 - ID_B1 SINE B4 0 224 44 4 1266 553 319 45 71 chr9 89323880 89323996 -34752176 - RMER15 LTR ERVL -17 558 442 4 1266 2526 144 99 189 chr9 89323996 89324663 -34751509 + RMER19C LTR ERVK 5 611 0 4 1266 553 319 45 71 chr9 89324663 89324813 -34751359 - RMER15 LTR ERVL -134 441 299 4 1266 1280 330 113 17 chr9 89324824 89325647 -34750525 - RMER15-int LTR ERVL -3715 1284 383 4 1266 439 369 28 76 chr9 89325855 89325879 -34750293 - RMER15 LTR ERVL -7 568 546 4 1266 2083 151 47 14 chr9 89325879 89326241 -34749931 + ORR1D1 LTR MaLR 1 374 0 4 1266 439 369 28 76 chr9 89326241 89326533 -34749639 - RMER15 LTR ERVL -30 545 267 4 1266 232 315 27 0 chr9 89326725 89326798 -34749374 - LTR40a LTR ERVL -87 432 358 4 1266 337 284 133 97 chr9 89326831 89327057 -34749115 - ORR1E LTR MaLR -121 253 20 4 1266 1649 216 46 27 chr9 89327108 89327518 -34748654 + MTD LTR MaLR 1 418 -1 4 1266 229 310 74 45 chr9 89329693 89329869 -34746303 - MER117 DNA MER1_type -8 189 9 4 1266 1237 41 0 0 chr9 89330677 89330822 -34745350 + B1_Mus2 SINE Alu 1 145 -2 4 1266 288 0 0 0 chr9 89330822 89330854 -34745318 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1266 421 325 46 39 chr9 89330937 89331222 -34744950 - MER33 DNA MER1_type -1 323 37 4 1266 378 411 86 40 chr9 89333203 89333608 -34742564 - LTR16E2 LTR ERVL -27 541 118 4 1266 33926 82 6 6 chr9 89333931 89339084 -34737088 + L1Md_F2 LINE L1 446 5585 -298 4 1266 8091 72 1 1 chr9 89339086 89340066 -34736106 + L1Md_F2 LINE L1 5588 6567 -15 4 1266 183 42 0 0 chr9 89340090 89340114 -34736058 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1266 298 337 24 12 chr9 89340657 89340822 -34735350 + MERVL_2A-int LTR ERVL 1003 1169 -3827 4 1266 414 370 55 29 chr9 89341389 89341698 -34734474 + MERVL_2A-int LTR ERVL 2112 2428 -3333 4 1266 1291 152 39 5 chr9 89341756 89341961 -34734211 + B3 SINE B2 2 213 -3 4 1266 26 0 0 0 chr9 89341966 89341992 -34734180 + AT_rich Low_complexity Low_complexity 1 26 0 4 1266 281 176 0 38 chr9 89341997 89342050 -34734122 + MER5A DNA MER1_type 110 160 -29 4 1266 289 340 66 63 chr9 89342329 89342678 -34733494 + MERVL_2A-int LTR ERVL 2710 3059 -2702 4 1266 252 319 53 0 chr9 89342755 89342849 -34733323 + MERVL_2A-int LTR ERVL 2998 3096 -2571 4 1266 461 229 0 0 chr9 89343855 89343938 -34732234 + B4 SINE B4 2 84 -208 4 1266 701 325 34 24 chr9 89343999 89344186 -34731986 + B4 SINE B4 82 272 -20 4 1266 351 0 0 0 chr9 89344186 89344225 -34731947 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1266 975 103 0 0 chr9 89344225 89344379 -34731793 + (GA)n Simple_repeat Simple_repeat 2 156 0 4 1266 701 325 34 24 chr9 89344379 89344398 -34731774 + B4 SINE B4 273 290 -2 4 1266 227 79 26 0 chr9 89344907 89344945 -34731227 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1266 1177 76 21 0 chr9 89344947 89345092 -34731080 + B1_Mus1 SINE Alu 1 148 0 5 1266 632 13 13 0 chr9 89345100 89345177 -34730995 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 5 1266 230 0 0 32 chr9 89345242 89345273 -34730899 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1266 361 250 42 53 chr9 89345383 89345525 -34730647 - B3 SINE B2 -6 210 1 5 1266 467 296 76 34 chr9 89345532 89345770 -34730402 - L1MB4 LINE L1 -43 6137 5888 5 1266 311 285 40 16 chr9 89345848 89345973 -34730199 - LTR16C LTR ERVL 0 489 362 5 1266 660 294 81 5 chr9 89346527 89346725 -34729447 - MER58A DNA MER1_type 0 224 12 5 1266 201 121 0 0 chr9 89347459 89347492 -34728680 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 5 1266 507 33 0 0 chr9 89347507 89347568 -34728604 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1266 188 413 42 0 chr9 89347893 89348036 -34728136 - L4 LINE RTE -458 1571 1423 5 1266 891 43 0 0 chr9 89348830 89348946 -34727226 + (TG)n Simple_repeat Simple_repeat 1 116 0 5 1266 509 280 146 56 chr9 89348969 89349147 -34727025 - B4 SINE B4 -44 248 55 5 1266 246 256 22 65 chr9 89350247 89350339 -34725833 - LTR81A LTR ERV1? -1138 212 125 5 1266 629 248 126 182 chr9 89350583 89350938 -34725234 + MLT1C LTR MaLR 6 324 -66 5 1266 561 68 0 0 chr9 89350938 89351012 -34725160 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 5 1266 499 248 126 182 chr9 89351012 89351046 -34725126 + MLT1C LTR MaLR 325 373 -17 5 1266 639 293 31 42 chr9 89351812 89352004 -34724168 - B3A SINE B2 -2 196 7 5 1266 239 333 26 0 chr9 89352439 89352517 -34723655 + RCHARR1 DNA MER1_type 3 82 -892 5 1266 816 311 39 21 chr9 89352753 89353039 -34723133 - B4 SINE B4 -1 291 1 5 1266 182 232 34 51 chr9 89353237 89353296 -34722876 + L2c LINE L2 3277 3334 -53 5 1266 296 264 36 36 chr9 89354436 89354546 -34721626 + MLT1A1 LTR MaLR 299 408 0 5 1266 1285 97 16 21 chr9 89355941 89356131 -34720041 - B2_Mm2 SINE B2 0 195 7 5 1266 256 373 79 45 chr9 89357863 89358040 -34718132 - L2b LINE L2 0 3375 3193 5 1266 258 213 97 44 chr9 89358180 89358293 -34717879 - MamGypLTR2b LTR Gypsy -21 901 783 5 1266 898 305 54 4 chr9 89359098 89359374 -34716798 + B4 SINE B4 1 290 -2 5 1266 3429 289 51 36 chr9 89359414 89360599 -34715573 + Lx7 LINE L1 6119 7320 -376 5 1266 21 0 0 0 chr9 89360761 89360782 -34715390 + AT_rich Low_complexity Low_complexity 1 21 0 5 1266 2664 89 129 0 chr9 89361704 89362076 -34714096 + RLTR9B2 LTR ERVK 1 420 0 5 1266 599 205 77 23 chr9 89364136 89364266 -34711906 + B4A SINE B4 111 247 -45 5 1266 1715 210 35 81 chr9 89364345 89364835 -34711337 - RLTR1B LTR ERV1 0 512 1 5 1266 1941 269 63 54 chr9 89365864 89366528 -34709644 + Lx8 LINE L1 6804 7473 0 5 1266 251 295 62 10 chr9 89366846 89366942 -34709230 + MIR3 SINE MIR 87 187 -21 5 1266 41919 10 2 6 chr9 89367105 89373538 -34702634 - L1Md_A LINE L1 0 6582 212 5 1266 576 169 14 21 chr9 89373870 89374015 -34702157 + CT-rich Low_complexity Low_complexity 4 147 0 5 1266 198 103 0 0 chr9 89374008 89374037 -34702135 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1266 648 226 16 69 chr9 89375032 89375279 -34700893 + L1MB2 LINE L1 2895 3128 -3018 5 1266 650 286 146 26 chr9 89375292 89375500 -34700672 - Tigger7 DNA MER2_type -12 2479 2253 5 1266 2396 179 71 107 chr9 89375500 89376089 -34700083 - RLTR12A LTR ERVK 0 568 1 5 1266 650 286 146 26 chr9 89376089 89376189 -34699983 - Tigger7 DNA MER2_type -239 2252 2134 5 1266 762 306 98 22 chr9 89376181 89376455 -34699717 - Tigger7 DNA MER2_type -2187 304 10 5 1266 2590 266 63 12 chr9 89376463 89377403 -34698769 + L1MB2 LINE L1 3172 4159 -1981 5 1266 1936 171 87 8 chr9 89377407 89377785 -34698387 - MTD LTR MaLR 0 419 12 5 1266 280 236 30 79 chr9 89377808 89377909 -34698263 + L1MB2 LINE L1 4144 4239 -1901 5 1266 1252 68 0 0 chr9 89377911 89378058 -34698114 + B1_Mus1 SINE Alu 2 148 0 5 1266 21 0 0 0 chr9 89378087 89378108 -34698064 + AT_rich Low_complexity Low_complexity 1 21 0 5 1266 3141 292 75 40 chr9 89378170 89378839 -34697333 + Lx8 LINE L1 6151 6813 -660 5 1266 627 14 0 0 chr9 89378839 89378911 -34697261 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1266 3141 292 75 40 chr9 89378911 89379517 -34696655 + Lx8 LINE L1 6814 7471 -2 5 1266 1093 292 59 45 chr9 89379540 89380136 -34696036 + L1MB2 LINE L1 4352 4955 -1185 5 1266 1489 265 132 42 chr9 89380111 89380760 -34695412 + L1MB2 LINE L1 5262 5969 -202 5 1266 1652 150 0 79 chr9 89380768 89381086 -34695086 - ORR1A4 LTR MaLR -36 293 1 5 1266 236 271 139 0 chr9 89381086 89381205 -34694967 + Charlie5 DNA MER1_type 2485 2620 -4 5 1266 373 360 41 52 chr9 89381217 89381429 -34694743 + L1MEe LINE L1 536 740 -4114 5 1266 1903 215 72 0 chr9 89381429 89381819 -34694353 - MTD LTR MaLR 0 419 2 5 1266 373 360 41 52 chr9 89381819 89382048 -34694124 + L1MEe LINE L1 741 971 -3883 5 1266 1022 258 111 17 chr9 89382206 89382557 -34693615 + L1MEc LINE L1 397 780 -5620 5 1266 332 272 130 23 chr9 89382612 89382789 -34693383 + L1ME3B LINE L1 5668 5863 -377 5 1266 1060 123 87 12 chr9 89382914 89383086 -34693086 - B2_Mm2 SINE B2 -6 189 5 5 1266 180 0 0 0 chr9 89383302 89383322 -34692850 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1266 325 260 14 0 chr9 89384920 89384993 -34691179 + L1_Rod LINE L1 2119 2192 -3655 5 1266 690 13 0 0 chr9 89385028 89385107 -34691065 + (TC)n Simple_repeat Simple_repeat 1 79 0 5 1266 225 0 0 0 chr9 89385107 89385131 -34691041 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1266 1280 295 74 19 chr9 89385199 89385371 -34690801 + L1M2 LINE L1 2557 2737 -3406 5 1266 585 0 0 0 chr9 89385371 89385436 -34690736 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 5 1266 1280 295 74 19 chr9 89385436 89385909 -34690263 + L1M2 LINE L1 2738 3238 -2905 5 1266 196 338 132 31 chr9 89386187 89386346 -34689826 + MIRb SINE MIR 1 175 -93 5 1266 24 0 0 0 chr9 89387532 89387556 -34688616 + AT_rich Low_complexity Low_complexity 1 24 0 5 1266 1291 41 0 7 chr9 89387666 89387812 -34688360 - B1_Mus1 SINE Alu -2 146 2 5 1266 375 78 0 0 chr9 89387990 89388041 -34688131 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1266 235 304 0 14 chr9 89388467 89388537 -34687635 - ID4 SINE ID -4 79 11 5 1266 273 118 0 0 chr9 89388887 89388938 -34687234 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1266 281 47 23 0 chr9 89388938 89388981 -34687191 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1266 396 0 0 0 chr9 89388981 89389024 -34687148 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1266 404 182 200 10 chr9 89389040 89389140 -34687032 - B3A SINE B2 -76 122 4 5 1266 226 355 0 0 chr9 89389741 89389803 -34686369 - MER44B DNA MER2_type 0 550 489 5 1266 1011 264 82 82 chr9 89389816 89389863 -34686309 - MER44B DNA MER2_type -141 409 360 5 1266 1466 65 5 5 chr9 89389863 89390049 -34686123 + B2_Mm2 SINE B2 1 186 -9 5 1266 1011 264 82 82 chr9 89390049 89390115 -34686057 - MER44B DNA MER2_type -191 359 315 5 1266 2698 118 30 23 chr9 89390115 89390542 -34685630 - RLTR23 LTR ERV1 0 430 1 5 1266 1011 264 82 82 chr9 89390542 89390827 -34685345 - MER44B DNA MER2_type -236 314 10 5 158 1753 155 46 101 chr9 89390830 89391247 -34684925 - RMER10B LTR ERVL -3 395 2 5 1267 459 245 27 34 chr9 89392030 89392178 -34683994 - B1F SINE Alu 0 149 3 5 1267 251 277 0 35 chr9 89392417 89392503 -34683669 + G-rich Low_complexity Low_complexity 1 83 0 5 1267 911 224 62 0 chr9 89392974 89393166 -34683006 + B3 SINE B2 2 205 -11 5 1267 189 107 0 0 chr9 89393689 89393717 -34682455 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 5 1267 230 276 208 9 chr9 89393810 89393916 -34682256 - MIR SINE MIR -27 235 109 5 1267 414 0 0 0 chr9 89394058 89394104 -34682068 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1267 636 38 0 0 chr9 89394104 89394182 -34681990 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1267 324 171 26 13 chr9 89395024 89395110 -34681062 - ORR1A4 LTR MaLR 0 394 298 5 1267 5319 76 53 3 chr9 89395110 89396502 -34679670 - L1_Mus3 LINE L1 -27 6611 5150 5 1267 1500 177 3 51 chr9 89396502 89396794 -34679378 - ORR1A4 LTR MaLR -51 278 1 5 1267 369 273 17 0 chr9 89396881 89397053 -34679119 + GA-rich Low_complexity Low_complexity 2 176 0 5 1267 764 286 52 28 chr9 89397071 89397359 -34678813 + L1MB3 LINE L1 5644 5938 -245 5 1267 207 0 0 0 chr9 89397390 89397413 -34678759 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1267 838 268 39 82 chr9 89397445 89397841 -34678331 - MTE2a LTR MaLR -39 380 1 5 1267 505 245 25 38 chr9 89397881 89398038 -34678134 + L1MB3 LINE L1 5980 6134 -49 5 1267 183 42 0 0 chr9 89398249 89398273 -34677899 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5 1267 1149 237 165 12 chr9 89398325 89398658 -34677514 + ORR1C2 LTR MaLR 1 384 0 5 1267 236 299 46 0 chr9 89399358 89399445 -34676727 - L1MC LINE L1 -2417 5465 5375 5 1267 272 125 0 0 chr9 89399503 89399543 -34676629 - B3 SINE B2 -101 115 76 5 1267 400 244 56 91 chr9 89399699 89399728 -34676444 - B2_Mm2 SINE B2 -4 191 161 5 1267 411 83 0 0 chr9 89399728 89399788 -34676384 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1267 680 244 56 91 chr9 89399788 89399956 -34676216 - B3A SINE B2 -35 160 1 5 1267 400 133 71 12 chr9 89399967 89400135 -34676037 + (TA)n Simple_repeat Simple_repeat 1 178 0 5 1267 21 0 0 0 chr9 89400175 89400196 -34675976 + AT_rich Low_complexity Low_complexity 1 21 0 5 1267 551 174 0 30 chr9 89400279 89400380 -34675792 - PB1D9 SINE Alu -1 119 22 5 1267 296 286 58 73 chr9 89400997 89401260 -34674912 + MTEa LTR MaLR 110 379 0 5 1267 226 261 0 14 chr9 89401395 89401465 -34674707 + T-rich Low_complexity Low_complexity 3 71 0 5 1267 201 74 0 0 chr9 89401677 89401704 -34674468 + (CAT)n Simple_repeat Simple_repeat 3 29 0 5 1267 225 202 47 12 chr9 89401734 89401819 -34674353 + CT-rich Low_complexity Low_complexity 4 91 0 5 1267 496 259 91 62 chr9 89401988 89402198 -34673974 - B4A SINE B4 -76 216 1 5 1267 183 200 44 0 chr9 89402198 89402243 -34673929 - MIR SINE MIR -111 151 105 5 1267 4230 197 78 54 chr9 89402478 89402592 -34673580 - RMER1A Other Other -6 1024 889 5 1267 416 35 17 0 chr9 89402592 89402650 -34673522 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1267 4230 224 55 55 chr9 89402650 89404143 -34672029 - RMER1A Other Other -142 888 1 5 1267 3472 148 24 3 chr9 89404239 89404821 -34671351 - RLTR17 LTR ERVK -98 594 1 5 1267 180 0 0 0 chr9 89404898 89404918 -34671254 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 5 1267 1596 148 11 100 chr9 89405291 89405652 -34670520 - ORR1A4 LTR MaLR 0 329 1 6 1267 536 241 103 24 chr9 89406176 89406403 -34669769 - L1MA6 LINE L1 -3 6297 6053 6 1267 306 0 0 0 chr9 89407004 89407038 -34669134 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1267 266 301 152 25 chr9 89407361 89407559 -34668613 + MLT1B LTR MaLR 127 349 -41 6 1267 1470 151 4 0 chr9 89407663 89407888 -34668284 + URR1A DNA MER1_type 1 226 0 6 1267 445 252 15 52 chr9 89409622 89409756 -34666416 + B4 SINE B4 2 130 -162 6 1267 613 227 45 7 chr9 89409719 89409874 -34666298 - MTD LTR MaLR -25 394 234 6 1267 610 321 51 36 chr9 89411140 89411496 -34664676 + MLT1A0 LTR MaLR 1 361 -4 6 1267 1739 108 76 7 chr9 89411741 89412031 -34664141 + ORR1B1 LTR MaLR 77 386 -8 6 1267 887 237 97 23 chr9 89412125 89412384 -34663788 - MTD LTR MaLR -3 416 139 6 1267 1949 158 3 3 chr9 89412384 89412708 -34663464 - ORR1A4 LTR MaLR 0 329 6 6 1267 9377 135 77 56 chr9 89412713 89414630 -34661542 - ORR1A4-int LTR MaLR 0 1963 8 6 1267 2059 123 41 3 chr9 89414630 89414947 -34661225 - ORR1A4 LTR MaLR 0 329 1 6 1267 390 311 0 0 chr9 89414947 89415050 -34661122 - MTD LTR MaLR -276 143 41 6 1267 550 280 33 65 chr9 89415424 89415730 -34660442 + ORR1E LTR MaLR 4 299 -60 6 1267 213 333 79 13 chr9 89416535 89416611 -34659561 - MIRb SINE MIR -158 110 30 6 1267 473 165 10 0 chr9 89417106 89417203 -34658969 + (CATA)n Simple_repeat Simple_repeat 3 100 0 6 1267 447 101 0 0 chr9 89418127 89418206 -34657966 + (T)n Simple_repeat Simple_repeat 1 79 0 6 1267 208 0 62 0 chr9 89419285 89419317 -34656855 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 6 1267 481 340 23 43 chr9 89419317 89419575 -34656597 + LTR16C LTR ERVL 228 480 -9 6 1267 410 257 157 31 chr9 89420383 89420676 -34655496 + L1M5 LINE L1 3669 3998 -2148 6 1267 1790 152 34 34 chr9 89420695 89421050 -34655122 + Lx3B LINE L1 6617 6971 -2 6 1267 477 318 29 37 chr9 89421350 89421592 -34654580 - MLT1F LTR MaLR -157 391 152 6 1267 425 322 211 15 chr9 89421592 89422122 -34654050 - L1M4 LINE L1 -2913 3233 2600 6 1267 423 248 25 8 chr9 89422382 89422500 -34653672 - MLT1A1 LTR MaLR 0 408 289 6 1267 543 366 28 28 chr9 89422550 89422837 -34653335 - B4A SINE B4 -5 287 1 6 1267 467 315 19 48 chr9 89422921 89423131 -34653041 - MLT1A1 LTR MaLR -189 219 16 6 1267 1162 165 9 9 chr9 89423219 89423439 -34652733 - URR1B DNA MER1_type -5 220 1 6 1267 600 303 50 26 chr9 89423617 89423959 -34652213 - L1M4 LINE L1 -3677 2469 2120 6 1267 235 282 14 14 chr9 89424585 89424657 -34651515 - ID4 SINE ID -11 72 1 6 1267 312 342 137 0 chr9 89425027 89425217 -34650955 + LTR33A_ LTR ERVL 21 236 -295 6 1267 1821 139 13 29 chr9 89425746 89426057 -34650115 - L1_Mur2 LINE L1 -328 5549 5244 6 1267 4664 169 93 0 chr9 89426055 89426862 -34649310 + Lx5 LINE L1 6169 7050 0 6 1267 234 0 0 0 chr9 89426900 89426926 -34649246 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1267 271 312 206 46 chr9 89426949 89426970 -34649202 + ID_B1 SINE B4 73 224 0 6 1267 274 364 36 0 chr9 89426970 89427080 -34649092 + PB1D7 SINE Alu 7 120 0 6 1267 248 333 80 13 chr9 89427965 89428100 -34648072 + LTR81C LTR ERV1? 825 914 -239 6 1267 3201 157 300 29 chr9 89428607 89429380 -34646792 - RLTR13C1 LTR ERVK 0 983 1 6 1267 1093 236 76 17 chr9 89429720 89430022 -34646150 - MLT2D LTR ERVL -92 322 3 6 1267 1200 248 76 98 chr9 89430576 89430725 -34645447 + RMER19A LTR ERVK 1 197 -705 6 1267 1053 57 7 0 chr9 89430725 89430866 -34645306 - B1_Mus2 SINE Alu 0 147 6 6 1267 1200 248 76 98 chr9 89430866 89431396 -34644776 + RMER19A LTR ERVK 198 902 0 6 1267 204 40 0 0 chr9 89432182 89432207 -34643965 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1267 1159 76 0 0 chr9 89432752 89432909 -34643263 + B2_Mm2 SINE B2 2 158 -37 6 1267 315 0 0 0 chr9 89432910 89432945 -34643227 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1267 218 242 43 43 chr9 89433874 89433943 -34642229 - MIRc SINE MIR -152 116 48 6 1267 226 266 101 0 chr9 89434250 89434329 -34641843 + MLT1A1 LTR MaLR 6 92 -375 6 1267 382 278 9 36 chr9 89434612 89434724 -34641448 + MLT1A1 LTR MaLR 300 408 0 6 1267 779 302 44 61 chr9 89434756 89435098 -34641074 + MLT1C LTR MaLR 132 467 0 6 1267 4545 165 48 17 chr9 89435208 89436126 -34640046 - Lx4B LINE L1 -573 6485 5534 6 1267 633 215 52 0 chr9 89436244 89436416 -34639756 + Tigger7 DNA MER2_type 2170 2350 -141 6 1267 2132 287 60 31 chr9 89436808 89437850 -34638322 - Lx8 LINE L1 -1568 5905 4802 6 1267 231 339 43 17 chr9 89438003 89438120 -34638052 + MIR SINE MIR 122 241 -21 6 1267 226 50 24 24 chr9 89438120 89438161 -34638011 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 6 1267 551 269 119 22 chr9 89438281 89438558 -34637614 - MER33 DNA MER1_type -11 313 10 6 1267 342 0 0 0 chr9 89438670 89438708 -34637464 + (TATG)n Simple_repeat Simple_repeat 2 39 0 6 1267 1225 33 0 0 chr9 89438709 89438862 -34637310 - B2_Mm2 SINE B2 -41 154 2 6 1267 250 307 35 9 chr9 89439832 89439947 -34636225 + Zaphod DNA Tip100 3881 3998 -33 6 1267 216 260 0 0 chr9 89441562 89441612 -34634560 + GA-rich Low_complexity Low_complexity 27 76 0 6 1267 319 259 18 27 chr9 89444048 89444159 -34632013 - L1M6 LINE L1 -6341 155 46 6 1267 482 314 0 0 chr9 89444497 89444618 -34631554 + MER45A DNA Tip100 46 166 -12 6 1267 29 0 0 0 chr9 89445124 89445153 -34631019 + AT_rich Low_complexity Low_complexity 1 29 0 6 1267 319 295 140 50 chr9 89445291 89445512 -34630660 - L1M5 LINE L1 -464 5660 5420 6 1267 261 0 0 0 chr9 89445702 89445731 -34630441 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1267 252 0 0 0 chr9 89445778 89445806 -34630366 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1267 433 141 12 12 chr9 89446414 89446500 -34629672 + CT-rich Low_complexity Low_complexity 1 86 0 6 1267 772 298 68 126 chr9 89446706 89447144 -34629028 + MER44B DNA MER2_type 137 549 -1 6 1267 2408 64 45 55 chr9 89448606 89448936 -34627236 + ORR1A2 LTR MaLR 1 327 0 6 1267 549 0 0 0 chr9 89449134 89449195 -34626977 + (TTTTG)n Simple_repeat Simple_repeat 3 63 0 6 1267 671 210 81 0 chr9 89449195 89449319 -34626853 - B1_Mus1 SINE Alu -12 136 3 6 1267 4915 146 10 26 chr9 89449739 89450519 -34625653 + Lx LINE L1 5877 6644 -10 6 1267 180 0 0 0 chr9 89450519 89450539 -34625633 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1267 207 0 0 0 chr9 89450757 89450780 -34625392 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 6 1267 251 224 35 0 chr9 89451520 89451578 -34624594 + HAL1 LINE L1 431 490 -2017 6 1267 2169 55 29 0 chr9 89451565 89451838 -34624334 - L1Md_F2 LINE L1 -436 6146 5866 6 1267 3645 57 0 9 chr9 89451838 89452278 -34623894 + L1Md_F2 LINE L1 6146 6581 -1 6 1267 1778 194 81 8 chr9 89452349 89452719 -34623453 - RLTR1 LTR ERV1 0 624 228 6 1267 3740 45 0 0 chr9 89453409 89453834 -34622338 + L1Md_T LINE L1 6158 6582 0 6 1267 239 296 90 14 chr9 89454155 89454299 -34621873 + HAL1 LINE L1 2240 2394 -113 6 1267 528 56 11 22 chr9 89454585 89454676 -34621496 + (TTTTG)n Simple_repeat Simple_repeat 2 91 0 6 1267 228 235 20 0 chr9 89454796 89454847 -34621325 + MLT1A LTR MaLR 5 56 -318 6 1267 257 212 15 29 chr9 89454978 89455046 -34621126 + CT-rich Low_complexity Low_complexity 5 71 0 6 1267 244 333 98 9 chr9 89455088 89455200 -34620972 + MLT1A LTR MaLR 223 344 -30 6 1267 244 284 45 0 chr9 89455820 89455887 -34620285 - MER117 DNA MER1_type -45 152 83 6 1267 695 220 0 11 chr9 89455973 89456152 -34620020 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 6 1267 3402 62 0 7 chr9 89456157 89456560 -34619612 - MTB LTR MaLR 0 400 1 6 1267 724 244 43 18 chr9 89456613 89456776 -34619396 - B3 SINE B2 -47 169 3 6 1267 233 318 93 49 chr9 89457110 89457315 -34618857 + L1M5 LINE L1 4604 4817 -1329 6 1267 263 333 0 0 chr9 89457502 89457574 -34618598 + ID4 SINE ID 1 72 -11 6 1267 405 0 0 0 chr9 89457574 89457619 -34618553 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1267 396 188 16 8 chr9 89458220 89458349 -34617823 + GA-rich Low_complexity Low_complexity 1 130 0 6 1267 698 319 102 15 chr9 89458394 89458999 -34617173 + L1MC4 LINE L1 1020 1677 -4538 6 1267 540 56 0 0 chr9 89459280 89459352 -34616820 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1267 454 205 32 44 chr9 89459663 89459821 -34616351 + RMER17B LTR ERVK 304 459 -499 6 1267 2441 65 36 24 chr9 89460087 89460416 -34615756 - L1_Mus2 LINE L1 0 6566 6234 6 1267 946 28 0 0 chr9 89460418 89460526 -34615646 + L1_Mus2 LINE L1 6108 6215 -351 6 1267 1281 242 65 16 chr9 89460526 89460870 -34615302 + MTD LTR MaLR 32 405 -14 6 1267 294 312 16 107 chr9 89460997 89461119 -34615053 + PB1 SINE Alu 1 111 -16 6 1267 552 232 139 48 chr9 89461959 89462167 -34614005 - MTEb LTR MaLR 0 379 153 6 1267 202 250 0 81 chr9 89463664 89463738 -34612434 - MIR SINE MIR -91 171 104 6 1267 180 77 0 0 chr9 89464367 89464393 -34611779 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 6 1267 204 333 12 36 chr9 89464395 89464560 -34611612 + (CATA)n Simple_repeat Simple_repeat 1 161 0 6 1267 2156 162 3 14 chr9 89464730 89465093 -34611079 - RLTR15 LTR ERVK 0 359 1 6 1267 268 346 47 16 chr9 89465302 89465431 -34610741 + MIRb SINE MIR 19 151 -117 6 1267 333 298 106 45 chr9 89465939 89466118 -34610054 + MIRb SINE MIR 27 216 -52 6 1267 207 0 0 0 chr9 89468203 89468226 -34607946 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1267 2371 112 12 0 chr9 89468258 89468578 -34607594 + ORR1A2 LTR MaLR 4 327 0 6 1267 199 339 113 68 chr9 89468797 89468930 -34607242 - MER5A DNA MER1_type -7 182 44 6 1267 22 0 0 0 chr9 89469221 89469243 -34606929 + AT_rich Low_complexity Low_complexity 1 22 0 6 1267 245 287 81 0 chr9 89469996 89470083 -34606089 - L2 LINE L2 -622 2797 2704 6 1267 242 279 90 52 chr9 89470256 89470411 -34605761 - L1M5 LINE L1 -1098 5048 4888 6 1267 229 284 225 20 chr9 89471873 89472024 -34604148 - MIRc SINE MIR -69 199 18 7 1267 523 303 98 7 chr9 89472144 89472320 -34603852 + MER74A LTR ERVL 33 259 -363 7 1267 536 315 58 44 chr9 89472366 89472592 -34603580 + MER74A LTR ERVL 292 520 -38 7 1267 205 269 63 13 chr9 89472664 89472743 -34603429 + MIRb SINE MIR 117 199 -69 7 1267 487 318 75 13 chr9 89473490 89473716 -34602456 + MLT1I LTR MaLR 170 409 -2 7 1267 323 264 121 34 chr9 89473843 89473992 -34602180 + L1MA6 LINE L1 6086 6247 -53 7 1267 229 369 180 26 chr9 89474121 89474466 -34601706 + L2 LINE L2 2549 2946 -473 7 1267 200 236 127 0 chr9 89474975 89475030 -34601142 + L3 LINE CR1 734 795 -3694 7 1267 393 282 111 16 chr9 89475492 89475618 -34600554 - B1F1 SINE Alu -10 139 2 7 1267 253 304 78 43 chr9 89475703 89475844 -34600328 - MamRep434 DNA TcMar 0 426 281 7 1267 34 42 0 0 chr9 89476062 89476110 -34600062 + AT_rich Low_complexity Low_complexity 1 48 0 7 1267 182 294 83 56 chr9 89476307 89476415 -34599757 - MIRm SINE MIR -75 201 91 7 1267 327 308 45 15 chr9 89476750 89476948 -34599224 + L1M5 LINE L1 5123 5326 -820 7 1267 281 89 22 0 chr9 89477026 89477071 -34599101 + (CAT)n Simple_repeat Simple_repeat 2 47 0 7 1267 557 265 152 11 chr9 89477899 89478090 -34598082 + ID_B1 SINE B4 6 223 -1 7 1267 305 233 0 11 chr9 89478090 89478181 -34597991 + GA-rich Low_complexity Low_complexity 1 90 0 7 1267 541 323 86 68 chr9 89478197 89479218 -34596954 + L1_Rod LINE L1 1570 2602 -3245 7 1267 849 288 66 154 chr9 89479221 89479922 -34596250 + Lx8 LINE L1 6774 7412 -61 7 1267 1209 252 25 23 chr9 89479974 89480087 -34596085 + L1M3 LINE L1 3765 3881 -2259 7 1267 1745 63 0 9 chr9 89480087 89480310 -34595862 + L1Md_F2 LINE L1 6361 6581 -1 7 1267 1209 252 25 23 chr9 89480310 89480549 -34595623 + L1M3 LINE L1 3882 4118 -2022 7 1267 316 230 62 31 chr9 89480561 89480677 -34595495 + L1MA4 LINE L1 5801 5930 -370 7 1267 376 304 85 58 chr9 89481066 89481278 -34594894 - B4 SINE B4 -11 281 93 7 1267 731 38 66 0 chr9 89481337 89481443 -34594729 + BC1_Mm scRNA scRNA 1 113 -39 7 1267 227 180 59 20 chr9 89481753 89481804 -34594368 + L1M5 LINE L1 5738 5790 -450 7 1267 204 256 49 37 chr9 89482189 89482270 -34593902 - L2c LINE L2 -16 3371 3290 7 1267 720 156 0 0 chr9 89483039 89483167 -34593005 + GA-rich Low_complexity Low_complexity 3 130 0 7 1267 335 100 33 0 chr9 89484175 89484235 -34591937 + (TATG)n Simple_repeat Simple_repeat 2 63 0 7 1267 528 30 0 0 chr9 89486467 89486533 -34589639 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 1267 875 36 9 0 chr9 89486533 89486644 -34589528 + (GAA)n Simple_repeat Simple_repeat 3 114 0 7 1267 422 303 62 51 chr9 89487468 89487663 -34588509 + LTR33 LTR ERVL 304 500 -15 7 1267 236 349 55 39 chr9 89487779 89487961 -34588211 + Cheshire DNA MER1_type 59 243 -2177 7 1267 259 286 0 25 chr9 89488284 89488363 -34587809 + (CATA)n Simple_repeat Simple_repeat 4 80 0 7 1267 277 169 13 25 chr9 89488363 89488442 -34587730 + GA-rich Low_complexity Low_complexity 6 83 0 7 1267 282 73 0 0 chr9 89489490 89489531 -34586641 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1267 582 109 0 0 chr9 89489999 89490091 -34586081 + (GGGGA)n Simple_repeat Simple_repeat 4 95 0 7 1267 243 321 93 19 chr9 89490323 89490431 -34585741 - MIRb SINE MIR -47 221 106 7 1267 289 317 61 34 chr9 89492345 89492492 -34583680 + L2c LINE L2 3178 3328 -59 7 1267 307 321 18 84 chr9 89492977 89493218 -34582954 - MIRb SINE MIR -26 242 16 7 1267 615 126 0 0 chr9 89493350 89493477 -34582695 + (GA)n Simple_repeat Simple_repeat 2 128 0 7 1267 571 300 0 0 chr9 89493823 89493943 -34582229 + RSINE1 SINE B4 16 135 -30 7 1267 366 23 0 0 chr9 89493944 89493987 -34582185 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1267 259 308 103 29 chr9 89498361 89498535 -34577637 + L1ME2z LINE L1 5602 5788 -336 7 1267 982 264 109 25 chr9 89498853 89498881 -34577291 + L1ME2z LINE L1 6012 6051 -393 7 1267 1260 131 126 0 chr9 89498881 89499080 -34577092 + URR1B DNA MER1_type 2 225 0 7 1267 982 264 109 25 chr9 89499080 89499444 -34576728 + L1ME2z LINE L1 6052 6437 -7 7 1267 292 231 192 55 chr9 89499660 89499907 -34576265 - L1ME1 LINE L1 -22 6157 5860 7 1267 370 270 0 0 chr9 89500863 89500963 -34575209 + B1F2 SINE Alu 13 112 -37 1 1267 181 279 152 65 chr9 89501518 89501656 -34574516 - MIRb SINE MIR -76 192 43 2 1267 796 264 14 112 chr9 89501894 89502180 -34573992 + B4A SINE B4 2 259 -33 3 1267 1662 239 27 25 chr9 89502198 89502602 -34573570 + MTD LTR MaLR 1 405 -14 4 1267 228 288 15 0 chr9 89503608 89503674 -34572498 + B4A SINE B4 1 67 -225 5 1267 182 272 183 10 chr9 89503771 89503875 -34572297 - MIR SINE MIR -64 144 23 6 1267 299 318 101 80 chr9 89504218 89504495 -34571677 + MLT1A1 LTR MaLR 69 394 -14 7 1267 4916 91 15 20 chr9 89504660 89505374 -34570798 - Lx LINE L1 -1 6653 5943 8 1267 189 0 0 0 chr9 89506135 89506156 -34570016 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 9 1267 540 30 0 0 chr9 89506698 89506764 -34569408 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1267 3826 92 30 26 chr9 89507012 89507582 -34568590 + Lx3A LINE L1 6400 6971 -10 1 1267 241 266 0 0 chr9 89507589 89507653 -34568519 + A-rich Low_complexity Low_complexity 1 64 0 1 1267 316 315 83 23 chr9 89507779 89508081 -34568091 + L1MEd LINE L1 906 1225 -4894 1 1267 212 81 81 0 chr9 89508100 89508137 -34568035 + A-rich Low_complexity Low_complexity 2 41 0 1 1267 216 0 0 0 chr9 89508526 89508550 -34567622 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1267 272 358 43 6 chr9 89508920 89509083 -34567089 + MIR SINE MIR 6 174 -88 1 1267 459 0 0 0 chr9 89509326 89509377 -34566795 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1267 213 121 0 0 chr9 89509381 89509414 -34566758 + (GGGAGA)n Simple_repeat Simple_repeat 5 37 0 1 1267 798 231 71 47 chr9 89509854 89510108 -34566064 + LTR53 LTR ERVL 1 260 -259 1 1267 25 31 0 0 chr9 89510440 89510472 -34565700 + AT_rich Low_complexity Low_complexity 1 32 0 2 1267 314 270 50 0 chr9 89510497 89510597 -34565575 + ID_B1 SINE B4 118 222 -2 2 1267 624 273 53 5 chr9 89510755 89510943 -34565229 + B3A SINE B2 2 198 0 2 1267 23 0 0 0 chr9 89511543 89511566 -34564606 + AT_rich Low_complexity Low_complexity 1 23 0 2 1267 311 209 67 7 chr9 89511880 89512029 -34564143 + (CA)n Simple_repeat Simple_repeat 2 159 0 2 1267 216 190 49 35 chr9 89513274 89513416 -34562756 + (CA)n Simple_repeat Simple_repeat 2 145 0 2 1267 387 0 0 0 chr9 89513416 89513459 -34562713 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1267 1039 86 7 0 chr9 89513968 89514108 -34562064 + B1_Mus1 SINE Alu 2 142 -6 2 1267 195 114 0 0 chr9 89514109 89514144 -34562028 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1267 24 53 0 0 chr9 89514210 89514248 -34561924 + AT_rich Low_complexity Low_complexity 1 38 0 2 1267 428 150 12 0 chr9 89515041 89515121 -34561051 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 1267 273 125 0 0 chr9 89515911 89515967 -34560205 + (A)n Simple_repeat Simple_repeat 1 56 0 3 1267 478 124 22 0 chr9 89517145 89517234 -34558938 + (CA)n Simple_repeat Simple_repeat 1 91 0 3 1267 498 14 28 14 chr9 89518631 89518703 -34557469 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1267 575 175 0 8 chr9 89518706 89518827 -34557345 + G-rich Low_complexity Low_complexity 3 122 0 3 1267 969 62 28 0 chr9 89520847 89520992 -34555180 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 3 1267 190 316 93 21 chr9 89521122 89521219 -34554953 + MIRb SINE MIR 109 212 -56 3 1267 296 283 0 11 chr9 89521252 89521441 -34554731 + GA-rich Low_complexity Low_complexity 1 186 0 3 1268 231 333 39 0 chr9 89522652 89522781 -34553391 + MLT1N2 LTR MaLR 422 555 -7 3 1268 220 298 87 24 chr9 89522979 89523106 -34553066 + MIR3 SINE MIR 30 164 -44 3 1268 2610 49 0 32 chr9 89524261 89524599 -34551573 - L1Md_F3 LINE L1 -16 6568 6242 4 1268 331 380 13 0 chr9 89524872 89525030 -34551142 - MIR SINE MIR -71 191 32 4 1268 973 128 165 0 chr9 89525031 89525219 -34550953 - URR1A DNA MER1_type 0 226 8 4 1268 1275 186 176 11 chr9 89525599 89525703 -34550469 - RMER1C Other Other -1 1341 1228 4 1268 712 59 20 0 chr9 89525703 89525805 -34550367 + (GAA)n Simple_repeat Simple_repeat 2 105 0 4 1268 1275 186 176 11 chr9 89525805 89526053 -34550119 - RMER1C Other Other -115 1227 932 4 1268 423 0 0 0 chr9 89526433 89526480 -34549692 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1268 366 338 49 37 chr9 89526551 89526797 -34549375 - L1MC LINE L1 -2067 5815 5567 4 1268 253 244 0 44 chr9 89527036 89527126 -34549046 + (TTTG)n Simple_repeat Simple_repeat 3 88 0 4 1268 217 138 97 65 chr9 89527644 89527706 -34548466 - PB1D9 SINE Alu -17 103 40 4 1268 450 237 0 0 chr9 89527709 89527989 -34548183 + CT-rich Low_complexity Low_complexity 1 280 0 4 1268 227 136 22 43 chr9 89527994 89528040 -34548132 - PB1D9 SINE Alu -61 59 15 4 1268 422 108 14 0 chr9 89528721 89528795 -34547377 + (TTTTC)n Simple_repeat Simple_repeat 2 76 0 5 1268 282 29 0 0 chr9 89528922 89528957 -34547215 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1268 507 73 0 0 chr9 89529028 89529096 -34547076 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1268 437 240 39 0 chr9 89529102 89529206 -34546966 - MTEb LTR MaLR -215 164 57 5 1268 825 184 0 7 chr9 89529284 89529432 -34546740 + B1_Mur4 SINE Alu 1 147 -3 5 1268 216 0 0 0 chr9 89529432 89529456 -34546716 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1268 1069 148 108 5 chr9 89529510 89529714 -34546458 + URR1B DNA MER1_type 1 225 0 5 1268 307 282 34 84 chr9 89529714 89529834 -34546338 - RMER15 LTR ERVL -165 410 300 5 1268 387 289 36 22 chr9 89531372 89531510 -34544662 - RMER15 LTR ERVL -14 561 422 5 1268 1888 136 0 0 chr9 89531668 89531969 -34544203 - ORR1A3 LTR MaLR -8 318 18 5 1268 1080 124 0 0 chr9 89533363 89533532 -34542640 + (GAA)n Simple_repeat Simple_repeat 1 169 0 6 1268 240 59 0 0 chr9 89535247 89535281 -34540891 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1268 185 389 0 27 chr9 89536301 89536375 -34539797 - MIR SINE MIR -63 145 74 6 1268 201 305 32 36 chr9 89537329 89537485 -34538687 - MIRm SINE MIR -59 209 43 6 1268 922 100 8 0 chr9 89537621 89537751 -34538421 - Lx5 LINE L1 -1046 6004 5874 6 1268 1627 235 10 92 chr9 89537779 89538364 -34537808 + RLTR31_Mur LTR ERVK 17 553 0 6 1268 4101 145 31 10 chr9 89538364 89539035 -34537137 - L1_Mur2 LINE L1 -4 5873 5189 6 1268 753 106 23 39 chr9 89539130 89539258 -34536914 + L1_Mur2 LINE L1 5287 5412 -465 6 1268 4578 180 39 2 chr9 89539259 89540085 -34536087 + Lx5 LINE L1 6192 7047 -3 6 1268 339 239 83 13 chr9 89540117 89540274 -34535898 + Lx9 LINE L1 7471 7638 -6 6 1268 1986 90 21 0 chr9 89540330 89540619 -34535553 - ORR1A2 LTR MaLR 0 327 33 7 1268 806 99 37 6 chr9 89540619 89540640 -34535532 + (GGA)n Simple_repeat Simple_repeat 1 21 0 7 1268 1305 83 0 0 chr9 89540640 89540820 -34535352 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1268 806 99 37 6 chr9 89540820 89540961 -34535211 + (GGA)n Simple_repeat Simple_repeat 1 147 0 7 1268 376 235 81 10 chr9 89540975 89541074 -34535098 + RMER1A Other Other 77 182 -848 7 1268 1812 199 175 16 chr9 89541041 89541481 -34534691 + RMER1B Other Other 557 1066 0 7 1268 404 241 19 0 chr9 89541516 89541611 -34534561 + B1_Mus2 SINE Alu 5 110 -10 7 1268 270 418 59 0 chr9 89543642 89543795 -34532377 + LTR16E2 LTR ERVL 162 323 -245 7 1268 512 278 94 21 chr9 89544436 89544627 -34531545 - MER20 DNA MER1_type -14 205 1 7 1268 396 0 0 0 chr9 89544631 89544675 -34531497 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1268 23 54 0 0 chr9 89544731 89544768 -34531404 + AT_rich Low_complexity Low_complexity 1 37 0 7 1268 188 356 177 8 chr9 89545477 89545607 -34530565 - L2a LINE L2 -2 3424 3273 8 1268 197 309 76 68 chr9 89545710 89545828 -34530344 - L2a LINE L2 -286 3140 3022 8 1268 197 33 0 32 chr9 89546535 89546566 -34529606 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1268 331 306 112 0 chr9 89546641 89546801 -34529371 + MLT2B4 LTR ERVL 1 178 -378 8 1268 451 279 86 16 chr9 89546912 89547098 -34529074 + MLT2B4 LTR ERVL 3 201 -355 8 1268 228 239 202 21 chr9 89547161 89547255 -34528917 + MLT2B4 LTR ERVL 331 441 -126 8 1268 692 283 121 14 chr9 89547342 89547622 -34528550 + MLT2B4 LTR ERVL 188 497 -59 8 1268 496 205 35 82 chr9 89547726 89547896 -34528276 - RMER15 LTR ERVL -11 564 403 8 1268 1434 152 33 143 chr9 89547901 89548361 -34527811 + RMER17C LTR ERVK 1 409 -1 8 1268 1173 190 131 22 chr9 89548362 89548674 -34527498 + RMER17C-int LTR ERVK 1 346 -2892 8 1268 672 267 73 87 chr9 89548786 89549206 -34526966 + RMER16 LTR ERVK 1 497 -36 8 1268 378 0 0 0 chr9 89549337 89549379 -34526793 + (TTTTA)n Simple_repeat Simple_repeat 5 46 0 8 1268 680 64 0 11 chr9 89549634 89549729 -34526443 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 8 1268 866 105 270 0 chr9 89549857 89550009 -34526163 - L1_Mus4 LINE L1 -571 6065 5873 9 1268 1315 50 0 0 chr9 89550008 89550169 -34526003 + L1_Mus4 LINE L1 5729 5889 -747 9 1268 655 242 150 4 chr9 89550222 89550475 -34525697 + L1MCa LINE L1 1920 2209 -4299 9 1268 491 248 0 0 chr9 89550487 89550596 -34525576 + B1F SINE Alu 12 120 -29 9 1268 525 269 68 7 chr9 89550604 89550690 -34525482 + B3A SINE B2 3 89 -109 9 1268 252 0 0 0 chr9 89550690 89550718 -34525454 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1268 525 269 68 7 chr9 89550718 89550777 -34525395 + B3A SINE B2 90 155 -43 9 1268 307 262 12 0 chr9 89550787 89550867 -34525305 + ERVL-int LTR ERVL 5407 5487 -274 9 1268 701 276 51 17 chr9 89550940 89551176 -34524996 + ERVL-int LTR ERVL 5514 5757 0 9 1268 270 342 14 138 chr9 89551176 89551393 -34524779 + MTEa LTR MaLR 1 190 -189 9 1268 982 116 0 7 chr9 89551929 89552068 -34524104 + B1_Mus1 SINE Alu 1 138 -10 9 1268 592 13 26 0 chr9 89552068 89552145 -34524027 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 9 1268 286 166 0 21 chr9 89552192 89552262 -34523910 - Lx2 LINE L1 -2 6995 6935 9 1268 3750 162 108 73 chr9 89552262 89552539 -34523633 + RMER19B LTR ERVK 1 238 -664 1 1268 2982 55 31 3 chr9 89552539 89552924 -34523248 + MTA_Mm LTR MaLR 1 396 0 1 1268 8196 76 6 13 chr9 89552924 89554029 -34522143 + MTA_Mm-int LTR MaLR 1 1098 0 1 1268 3083 56 10 5 chr9 89554029 89554423 -34521749 + MTA_Mm LTR MaLR 1 396 0 1 1268 3750 162 108 73 chr9 89554423 89555001 -34521171 + RMER19B LTR ERVK 239 886 -16 1 1268 33216 84 11 4 chr9 89555028 89560352 -34515820 + L1Md_F LINE L1 238 5586 -297 1 1268 7751 68 7 7 chr9 89560352 89561348 -34514824 + L1Md_F2 LINE L1 5587 6582 0 1 1268 33216 73 5 1 chr9 89561348 89561370 -34514802 + L1Md_F LINE L1 5587 5612 -271 1 1268 625 253 0 140 chr9 89561361 89561582 -34514590 - Lx2B LINE L1 -62 6938 6749 1 1268 405 245 104 0 chr9 89561790 89561896 -34514276 - B3A SINE B2 -81 117 1 1 1268 350 370 116 8 chr9 89563325 89563584 -34512588 + MLT1G LTR MaLR 270 556 -35 1 1268 1433 70 16 0 chr9 89564359 89564544 -34511628 + B2_Mm2 SINE B2 3 190 -5 1 1268 200 222 0 0 chr9 89564544 89564580 -34511592 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 1 1268 1222 120 16 11 chr9 89565072 89565258 -34510914 + B2_Mm2 SINE B2 2 188 -7 1 1268 777 220 52 31 chr9 89565258 89565450 -34510722 - B3A SINE B2 0 198 3 1 1268 213 358 0 0 chr9 89566193 89566260 -34509912 + ID4_ SINE ID 7 73 -10 1 1268 739 278 46 29 chr9 89566443 89566724 -34509448 - Lx8 LINE L1 -233 7240 6955 1 1268 211 268 0 35 chr9 89567000 89567085 -34509087 + A-rich Low_complexity Low_complexity 3 84 0 1 1268 465 320 15 44 chr9 89567090 89567293 -34508879 - Lx7 LINE L1 -406 7290 7094 1 1268 572 254 29 22 chr9 89568470 89568607 -34507565 - B1F SINE Alu -3 146 9 1 1268 435 322 6 50 chr9 89568478 89568638 -34507534 - ID_B1 SINE B4 -8 216 64 1 1268 1677 208 26 19 chr9 89570006 89570209 -34505963 + L1_Mur3 LINE L1 4624 4822 -1058 1 1268 423 0 0 0 chr9 89570209 89570256 -34505916 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1268 1677 208 26 19 chr9 89570256 89570430 -34505742 + L1_Mur3 LINE L1 4823 5004 -876 1 1268 341 278 0 0 chr9 89570658 89570730 -34505442 + ID4 SINE ID 12 83 0 1 1268 448 109 49 32 chr9 89570844 89570903 -34505269 + polypyrimidine Low_complexity Low_complexity 67 125 0 1 1268 1132 100 0 22 chr9 89570903 89571087 -34505085 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1 1268 448 109 49 32 chr9 89571087 89571150 -34505022 + polypyrimidine Low_complexity Low_complexity 1 66 0 1 1268 318 332 93 69 chr9 89572181 89572601 -34503571 + MER90a LTR ERV1 181 610 -4 1 1268 229 252 59 59 chr9 89572933 89573051 -34503121 + MTEb LTR MaLR 241 358 -21 1 1268 341 259 33 49 chr9 89573141 89573263 -34502909 + Lx7 LINE L1 7559 7678 -18 1 1268 596 14 0 14 chr9 89573349 89573423 -34502749 + (GA)n Simple_repeat Simple_repeat 1 73 0 1 1268 21 36 0 0 chr9 89573664 89573692 -34502480 + AT_rich Low_complexity Low_complexity 1 28 0 1 1268 1052 255 58 11 chr9 89574342 89574616 -34501556 + B4A SINE B4 2 288 -4 1 1268 237 245 0 0 chr9 89574623 89574672 -34501500 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1268 288 0 0 0 chr9 89575283 89575315 -34500857 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1268 412 226 21 0 chr9 89575362 89575455 -34500717 - RSINE1 SINE B4 -64 101 7 1 1268 1653 199 158 0 chr9 89575660 89576053 -34500119 + MT2A LTR ERVL 3 457 -76 1 1268 1821 160 37 37 chr9 89578043 89578446 -34497726 + RMER4B LTR ERVK 15 417 -168 1 1268 495 48 0 0 chr9 89578468 89578530 -34497642 + (TCCC)n Simple_repeat Simple_repeat 2 63 0 1 1268 253 149 147 13 chr9 89578538 89578613 -34497559 + RMER4B LTR ERVK 501 585 0 1 1268 276 149 0 0 chr9 89579059 89579106 -34497066 + (TCTCCC)n Simple_repeat Simple_repeat 4 50 0 1 1268 477 50 0 0 chr9 89579249 89579309 -34496863 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1268 705 240 0 80 chr9 89579757 89579983 -34496189 - B4 SINE B4 -4 288 81 1 1268 198 143 0 0 chr9 89579984 89580019 -34496153 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 1268 1541 54 0 5 chr9 89580264 89580451 -34495721 - B2_Mm2 SINE B2 -9 186 1 1 1268 25 31 0 0 chr9 89580494 89580526 -34495646 + AT_rich Low_complexity Low_complexity 1 32 0 1 1268 378 0 0 0 chr9 89580539 89580581 -34495591 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1268 256 235 0 0 chr9 89580592 89580643 -34495529 - ID4_ SINE ID -24 59 9 1 1268 610 239 67 57 chr9 89581211 89581420 -34494752 - MER20 DNA MER1_type -5 214 4 1 1268 22 70 0 0 chr9 89582305 89582348 -34493824 + AT_rich Low_complexity Low_complexity 1 43 0 1 1268 269 297 21 32 chr9 89582348 89582442 -34493730 - MLT1F1 LTR MaLR -82 487 395 1 1268 225 264 0 0 chr9 89582905 89582977 -34493195 + (CACCAT)n Simple_repeat Simple_repeat 1 72 0 1 1268 426 323 6 18 chr9 89583017 89583187 -34492985 + (CCA)n Simple_repeat Simple_repeat 3 170 0 1 1268 781 184 7 0 chr9 89583218 89583359 -34492813 - B1_Mur4 SINE Alu -8 142 1 1 1268 330 26 0 0 chr9 89583782 89583821 -34492351 + (GGA)n Simple_repeat Simple_repeat 1 39 0 1 1268 338 285 81 45 chr9 89584032 89584278 -34491894 - L1MC4a LINE L1 -1964 5918 5664 1 1268 247 207 34 68 chr9 89584281 89584369 -34491803 - MIRc SINE MIR -126 142 58 1 1268 650 266 171 16 chr9 89584698 89584937 -34491235 - B4 SINE B4 -2 290 15 1 1268 22 0 0 0 chr9 89585741 89585763 -34490409 + AT_rich Low_complexity Low_complexity 1 22 0 1 1268 303 28 0 0 chr9 89585774 89585810 -34490362 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 1 1268 561 283 14 0 chr9 89585985 89586130 -34490042 + B1F2 SINE Alu 2 148 -1 1 1268 912 245 10 5 chr9 89586677 89586874 -34489298 - B3 SINE B2 -5 211 14 1 1268 408 20 0 0 chr9 89587248 89587297 -34488875 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1268 1196 68 0 0 chr9 89587354 89587501 -34488671 + B1_Mus1 SINE Alu 2 148 0 1 1268 229 277 15 44 chr9 89587527 89587595 -34488577 - RSINE1 SINE B4 -97 68 3 1 1268 2607 253 149 23 chr9 89588032 89588944 -34487228 - Lx6 LINE L1 -27 7433 6200 1 1268 201 154 0 0 chr9 89589448 89589487 -34486685 + GA-rich Low_complexity Low_complexity 3 41 0 1 1268 719 257 0 7 chr9 89589516 89589661 -34486511 - RSINE1 SINE B4 -20 145 2 1 1268 1672 164 0 103 chr9 89590212 89590524 -34485648 + ORR1A4 LTR MaLR 1 285 -44 1 1268 7812 28 2 11 chr9 89590524 89591430 -34484742 + L1Md_F3 LINE L1 5657 6563 -21 1 1268 414 0 0 0 chr9 89591430 89591476 -34484696 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1268 7812 28 2 11 chr9 89591476 89591493 -34484679 + L1Md_F3 LINE L1 6564 6572 -12 1 1268 1672 164 0 103 chr9 89591493 89591547 -34484625 + ORR1A4 LTR MaLR 286 329 0 1 1268 181 254 105 35 chr9 89594973 89595030 -34481142 - MIRc SINE MIR -143 125 65 1 1268 209 307 70 30 chr9 89595119 89595220 -34480952 - MIRc SINE MIR -108 168 55 1 1268 190 197 0 43 chr9 89597003 89597072 -34479100 + GA-rich Low_complexity Low_complexity 4 69 0 1 1268 180 0 0 0 chr9 89597138 89597158 -34479014 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1268 324 0 0 0 chr9 89597158 89597193 -34478979 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1268 749 251 98 91 chr9 89598127 89598403 -34477769 - MTE2b LTR MaLR -67 312 35 1 1268 243 0 0 0 chr9 89598507 89598534 -34477638 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1268 988 82 30 0 chr9 89598535 89598669 -34477503 - B1_Mus1 SINE Alu -9 139 2 1 1268 279 0 0 0 chr9 89598713 89598744 -34477428 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1268 22 0 0 0 chr9 89600668 89600690 -34475482 + AT_rich Low_complexity Low_complexity 1 22 0 1 1268 681 252 84 1 chr9 89600788 89600978 -34475194 - B3A SINE B2 -1 215 7 1 1268 270 0 0 0 chr9 89601057 89601087 -34475085 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1268 246 360 21 35 chr9 89602421 89602565 -34473607 - MLT1H LTR MaLR -336 213 72 1 1268 186 389 45 27 chr9 89602874 89602985 -34473187 + L3 LINE CR1 4371 4483 -6 1 1268 431 147 0 0 chr9 89603075 89603143 -34473029 + B1_Mus2 SINE Alu 10 77 -70 1 1268 197 33 33 0 chr9 89603155 89603185 -34472987 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1268 894 74 0 0 chr9 89603186 89603308 -34472864 - B1_Mm SINE Alu -13 134 13 1 1268 343 308 38 6 chr9 89603308 89603463 -34472709 + L1M5 LINE L1 3907 4067 -2079 1 1268 641 285 63 26 chr9 89603463 89603733 -34472439 + B4A SINE B4 1 280 -12 1 1268 215 61 30 0 chr9 89603783 89603816 -34472356 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1268 1177 159 30 22 chr9 89604279 89604511 -34471661 - ORR1B1 LTR MaLR -160 234 1 1 1268 561 191 376 0 chr9 89605022 89605179 -34470993 - B3 SINE B2 0 216 1 1 1268 230 308 15 0 chr9 89605536 89605601 -34470571 + tRNA-Ala-GCG tRNA tRNA 1 66 -9 1 1268 180 77 0 0 chr9 89605827 89605853 -34470319 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 1 1268 3960 146 30 69 chr9 89605853 89606620 -34469552 - Lx4B LINE L1 -20 7038 6302 1 1268 3301 151 29 21 chr9 89607054 89607634 -34468538 + Lx2B LINE L1 5652 6236 -764 1 1268 2163 181 53 25 chr9 89607634 89608190 -34467982 - RMER19B LTR ERVK 0 902 1 1 1268 3226 206 67 10 chr9 89608190 89608893 -34467279 + Lx2B LINE L1 6231 6973 -27 1 1268 387 0 0 0 chr9 89608894 89608937 -34467235 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1268 228 308 29 81 chr9 89608956 89609129 -34467043 - MLT1I LTR MaLR -2 409 246 1 1268 1564 217 102 3 chr9 89609161 89609535 -34466637 - MTD LTR MaLR -8 411 1 1 1268 1458 177 108 48 chr9 89610098 89610495 -34465677 + RMER10A LTR ERVL 15 435 -7 1 1268 1087 283 41 82 chr9 89610775 89611167 -34465005 - MTE2a LTR MaLR 0 379 4 1 1268 323 333 80 31 chr9 89611222 89611547 -34464625 - L1ME1 LINE L1 -25 6154 5814 1 1268 411 307 73 28 chr9 89611557 89611775 -34464397 - L1ME1 LINE L1 -1302 4844 4617 1 1268 479 289 66 15 chr9 89611801 89612116 -34464056 + L1M4 LINE L1 4841 5202 -944 1 1268 280 253 10 31 chr9 89612159 89612257 -34463915 + L1M4 LINE L1 3349 3444 -2702 2 1268 1565 242 70 73 chr9 89612564 89613046 -34463126 + RLTR28B LTR ERVL 1 481 0 2 1268 657 38 0 0 chr9 89613487 89613567 -34462605 + (GGGA)n Simple_repeat Simple_repeat 4 83 0 2 1268 325 340 25 42 chr9 89613571 89613736 -34462436 + MIR SINE MIR 32 199 -77 2 1268 218 204 0 18 chr9 89613973 89614028 -34462144 + (CAGAGA)n Simple_repeat Simple_repeat 5 58 0 2 1268 304 344 54 32 chr9 89614468 89614654 -34461518 - L1M5 LINE L1 -1375 4771 4582 2 1268 571 329 0 35 chr9 89614661 89614831 -34461341 + RSINE1 SINE B4 1 164 -1 2 1268 241 296 12 24 chr9 89614832 89614915 -34461257 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1268 8121 45 2 7 chr9 89614924 89616105 -34460067 - L1Md_F2 LINE L1 -3 6579 5407 2 1268 2244 102 53 44 chr9 89616115 89616454 -34459718 - Lx LINE L1 -6 6648 6307 2 1268 305 303 20 0 chr9 89617100 89617199 -34458973 + CT-rich Low_complexity Low_complexity 5 105 0 2 1268 21 0 0 0 chr9 89617279 89617300 -34458872 + AT_rich Low_complexity Low_complexity 1 21 0 2 1268 542 284 27 73 chr9 89618010 89618271 -34457901 + ORR1E LTR MaLR 1 242 -128 2 1268 414 0 0 0 chr9 89618449 89618495 -34457677 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1268 274 309 111 0 chr9 89618664 89618745 -34457427 + MTE2a LTR MaLR 6 95 -284 2 1268 526 303 185 42 chr9 89618739 89619052 -34457120 - MTE2b LTR MaLR -19 360 3 2 1268 414 0 0 0 chr9 89621047 89621093 -34455079 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1268 298 353 39 44 chr9 89621412 89621593 -34454579 + MER20B DNA MER1_type 1 180 -603 2 1268 23 0 0 0 chr9 89621659 89621682 -34454490 + AT_rich Low_complexity Low_complexity 1 23 0 2 1268 246 283 119 54 chr9 89621959 89622127 -34454045 - MIR SINE MIR -34 228 50 2 1268 216 0 0 0 chr9 89622422 89622446 -34453726 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1268 345 293 57 45 chr9 89625246 89625403 -34450769 + MIRb SINE MIR 61 219 -49 2 1268 823 266 34 19 chr9 89625405 89625612 -34450560 + B3 SINE B2 2 211 -5 2 1268 281 262 34 86 chr9 89625743 89625860 -34450312 + L2a LINE L2 3307 3417 -9 2 1268 1095 283 8 8 chr9 89626412 89626665 -34449507 + B4 SINE B4 36 288 -4 2 1268 279 0 0 0 chr9 89626980 89627011 -34449161 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1268 186 330 135 15 chr9 89627201 89627401 -34448771 + L2c LINE L2 2918 3141 -246 2 1268 275 192 46 92 chr9 89627500 89627609 -34448563 + L1M4 LINE L1 5346 5449 -725 2 1268 251 352 71 8 chr9 89627803 89627929 -34448243 + MLT1H LTR MaLR 147 280 -269 2 1268 203 148 0 36 chr9 89628066 89628122 -34448050 + T-rich Low_complexity Low_complexity 1 54 0 2 1268 496 344 19 64 chr9 89628276 89628540 -34447632 - MIRb SINE MIR -1 267 16 2 1268 705 315 10 5 chr9 89629292 89629490 -34446682 + B4 SINE B4 16 214 -78 2 1268 811 231 148 0 chr9 89629960 89630142 -34446030 - B3 SINE B2 -6 210 2 2 1268 324 254 65 54 chr9 89631009 89631157 -34445015 + MIRc SINE MIR 63 222 -46 2 1268 519 17 0 0 chr9 89631359 89631419 -34444753 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1268 897 266 23 5 chr9 89631468 89631683 -34444489 - ID_B1 SINE B4 0 224 6 2 1268 364 308 52 13 chr9 89631824 89632043 -34444129 + MIRb SINE MIR 26 257 -11 2 1268 450 0 0 0 chr9 89633695 89633745 -34442427 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1268 323 308 67 63 chr9 89634044 89634146 -34442026 - L1MEe LINE L1 -2704 3442 3334 2 1268 405 0 0 0 chr9 89634146 89634191 -34441981 + (TATG)n Simple_repeat Simple_repeat 4 48 0 2 1268 323 308 67 63 chr9 89634191 89634327 -34441845 - L1MEe LINE L1 -2813 3333 3203 2 1268 263 305 12 151 chr9 89635368 89635534 -34440638 + MIR SINE MIR 7 149 -113 2 1268 189 318 0 0 chr9 89635639 89635683 -34440489 - L2b LINE L2 -66 3309 3266 2 1268 232 204 21 11 chr9 89635785 89635879 -34440293 + RMER17C LTR ERVK 188 282 -128 2 1268 1005 272 130 21 chr9 89636094 89636721 -34439451 - L1_Mur3 LINE L1 -1007 5136 4408 2 1268 282 261 143 42 chr9 89636728 89636767 -34439405 - B2_Mm2 SINE B2 -9 186 2 2 1268 719 217 23 0 chr9 89636767 89636896 -34439276 - RSINE1 SINE B4 -31 134 3 2 1268 232 321 0 0 chr9 89636910 89636994 -34439178 - L1_Mur3 LINE L1 -1745 4398 4315 2 1268 706 212 11 32 chr9 89637008 89637293 -34438879 + C-rich Low_complexity Low_complexity 1 278 0 2 1268 644 174 16 54 chr9 89637317 89637688 -34438484 + CT-rich Low_complexity Low_complexity 1 356 0 2 1268 487 160 0 103 chr9 89637685 89637880 -34438292 + C-rich Low_complexity Low_complexity 1 175 0 2 1268 509 186 11 73 chr9 89637841 89638203 -34437969 + CT-rich Low_complexity Low_complexity 1 339 0 2 1268 543 181 17 55 chr9 89638244 89638425 -34437747 + CT-rich Low_complexity Low_complexity 3 176 0 2 1268 2360 298 59 20 chr9 89638552 89639588 -34436584 - L1_Mur3 LINE L1 -1591 4289 3214 2 1268 307 316 45 60 chr9 89639590 89639859 -34436313 - L1MEe LINE L1 -4501 1665 1401 2 1268 254 320 65 25 chr9 89639828 89640104 -34436068 - L1_Mur3 LINE L1 -4167 1713 1427 2 1268 24 0 0 0 chr9 89641716 89641740 -34434432 + AT_rich Low_complexity Low_complexity 1 24 0 2 1268 314 278 45 9 chr9 89642338 89642445 -34433727 - PB1D10 SINE Alu -1 116 2 2 1268 240 296 71 120 chr9 89643018 89643252 -34432920 + L1_Rod LINE L1 1203 1445 -4402 2 1268 1553 17 80 0 chr9 89643252 89643411 -34432761 + B2_Mm1t SINE B2 2 160 -33 2 1268 207 0 0 0 chr9 89643411 89643434 -34432738 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1268 1553 17 80 0 chr9 89643434 89643450 -34432722 + B2_Mm1t SINE B2 161 189 -4 2 1268 323 296 71 120 chr9 89643450 89643817 -34432355 + L1_Rod LINE L1 1446 1775 -4072 2 1268 1357 295 96 21 chr9 89643899 89644853 -34431319 + L1_Rod LINE L1 1945 2967 -2880 2 1268 1663 284 94 31 chr9 89644858 89645700 -34430472 + L1M2 LINE L1 4204 5098 -1045 2 1268 261 156 0 0 chr9 89645719 89645764 -34430408 - RMER19C LTR ERVK 0 902 858 2 1268 4181 57 0 14 chr9 89645764 89646261 -34429911 + L1_Mus1 LINE L1 6078 6567 0 2 1268 22 0 0 0 chr9 89646261 89646283 -34429889 + AT_rich Low_complexity Low_complexity 1 22 0 2 1268 1983 200 5 241 chr9 89646283 89647041 -34429131 - RMER19C LTR ERVK -32 579 1 2 1268 415 207 11 11 chr9 89647110 89647198 -34428974 + RMER19C LTR ERVK 106 193 -418 2 1268 1027 199 109 5 chr9 89647280 89647472 -34428700 - B3 SINE B2 -4 212 1 2 1268 816 272 11 0 chr9 89647515 89647695 -34428477 - B3A SINE B2 -16 182 1 2 1268 764 256 5 27 chr9 89647826 89648011 -34428161 - Lx7 LINE L1 -939 6534 6354 2 1268 256 103 35 0 chr9 89648011 89648069 -34428103 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1268 226 305 69 64 chr9 89648073 89648276 -34427896 - Lx7 LINE L1 -1284 6189 5986 2 1268 387 183 0 0 chr9 89648339 89648421 -34427751 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 1268 1609 233 124 19 chr9 89648452 89649050 -34427122 - Lx7 LINE L1 -1787 5909 5263 2 1268 180 0 0 0 chr9 89649216 89649236 -34426936 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1268 233 289 72 19 chr9 89649403 89649537 -34426635 - Lx9 LINE L1 -1738 5906 5731 2 1268 279 133 0 0 chr9 89649537 89649582 -34426590 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1268 695 278 192 11 chr9 89649602 89649962 -34426210 - L1M2 LINE L1 -523 5777 5353 2 1268 435 119 0 0 chr9 89649963 89650030 -34426142 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 2 1268 392 222 75 38 chr9 89650030 89650189 -34425983 - L1M2 LINE L1 -799 5344 5180 2 1268 287 277 50 0 chr9 89650221 89650322 -34425850 - L1M2 LINE L1 -928 5212 5107 2 1268 346 221 68 81 chr9 89650368 89650516 -34425656 - L1M2 LINE L1 -1030 5116 4911 2 1268 1329 168 22 5 chr9 89651486 89651708 -34424464 + RLTR20B1 LTR ERVK 1 226 -337 2 1268 220 333 0 0 chr9 89651762 89651843 -34424329 + MER5A DNA MER1_type 9 89 -100 2 1268 200 313 14 29 chr9 89651926 89651995 -34424177 - MER5B DNA MER1_type -17 161 94 2 1268 744 12 0 0 chr9 89652993 89653078 -34423094 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 158 250 323 69 20 chr9 89653232 89653333 -34422839 + B4A SINE B4 71 176 -116 2 1269 468 252 18 45 chr9 89653255 89653367 -34422805 + PB1D10 SINE Alu 8 116 -1 2 1269 1534 226 32 40 chr9 89653403 89653776 -34422396 - ORR1D2 LTR MaLR 0 370 1 2 1269 821 222 144 0 chr9 89654310 89654504 -34421668 - MTD LTR MaLR 0 419 198 2 1269 21 0 0 0 chr9 89654629 89654650 -34421522 + AT_rich Low_complexity Low_complexity 1 21 0 2 1269 214 167 33 0 chr9 89654653 89654713 -34421459 + (TTATA)n Simple_repeat Simple_repeat 2 63 0 2 1269 388 333 30 61 chr9 89654916 89655047 -34421125 + RSINE1 SINE B4 12 138 -27 2 1269 419 52 17 0 chr9 89655065 89655123 -34421049 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1269 330 286 21 83 chr9 89655142 89655287 -34420885 + B3A SINE B2 58 193 -5 2 1269 181 28 111 0 chr9 89655326 89655362 -34420810 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1269 513 138 68 11 chr9 89655544 89655632 -34420540 - RLTR20A LTR ERVK -439 102 10 2 1269 450 94 0 0 chr9 89655945 89656009 -34420163 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 2 1269 369 312 164 24 chr9 89656025 89656240 -34419932 + L1MC5 LINE L1 5403 5651 -2231 2 1269 195 69 0 0 chr9 89656240 89656269 -34419903 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1269 369 312 164 24 chr9 89656269 89656424 -34419748 + L1MC5 LINE L1 5652 5825 -2057 2 1269 231 125 0 0 chr9 89656452 89656492 -34419680 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1269 227 217 0 21 chr9 89656565 89656612 -34419560 + ORR1D2 LTR MaLR 280 325 -45 2 1269 1308 204 209 104 chr9 89657826 89657960 -34418212 + MT2A LTR ERVL 1 121 -412 2 1269 3641 43 7 2 chr9 89657960 89658381 -34417791 - L1Md_F2 LINE L1 -3 6579 6157 2 1269 1308 204 209 104 chr9 89658381 89658682 -34417490 + MT2A LTR ERVL 122 487 -46 2 1269 576 0 0 0 chr9 89658682 89658746 -34417426 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 2 1269 1308 204 209 104 chr9 89658746 89658791 -34417381 + MT2A LTR ERVL 488 532 -1 2 1269 381 270 0 10 chr9 89658955 89659056 -34417116 - BC1_Mm scRNA scRNA -51 101 2 2 1269 559 304 55 22 chr9 89659107 89659317 -34416855 + MER20 DNA MER1_type 7 219 0 2 1269 411 238 151 22 chr9 89659317 89659549 -34416623 + L1MC5 LINE L1 7330 7591 -370 2 1269 1974 36 0 4 chr9 89659559 89659785 -34416387 - L1Md_T LINE L1 0 6582 6358 2 1269 351 0 0 0 chr9 89659881 89659920 -34416252 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1269 924 330 117 69 chr9 89659935 89660766 -34415406 + Charlie1a DNA MER1_type 7 880 -575 2 1269 3963 111 43 27 chr9 89660766 89661366 -34414806 - Lx LINE L1 -5 6649 6040 3 1269 924 330 117 69 chr9 89661366 89661422 -34414750 + Charlie1a DNA MER1_type 881 937 -518 2 1269 631 301 150 15 chr9 89661536 89661796 -34414376 - LTR31 LTR ERV1 -103 516 222 3 1269 241 315 0 52 chr9 89662187 89662264 -34413908 - Charlie1b DNA MER1_type -13 510 438 3 1269 761 281 32 0 chr9 89663181 89663366 -34412806 - ID_B1 SINE B4 -2 222 32 3 1269 308 280 167 15 chr9 89663561 89663694 -34412478 - MIR SINE MIR -110 166 10 3 1269 195 293 108 33 chr9 89666443 89666563 -34409609 + L2b LINE L2 3247 3375 0 3 1269 1155 88 0 20 chr9 89666911 89667062 -34409110 + B1_Mus1 SINE Alu 1 148 0 3 1269 1405 281 32 24 chr9 89668173 89668548 -34407624 - MTE2a LTR MaLR -1 378 1 3 1269 261 0 0 0 chr9 89668863 89668892 -34407280 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1269 185 108 27 0 chr9 89668896 89668933 -34407239 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 3 1269 323 369 41 6 chr9 89668939 89669108 -34407064 - MIRb SINE MIR -15 253 79 3 1269 419 256 43 43 chr9 89669495 89669634 -34406538 - B1F SINE Alu -10 139 1 3 1269 252 313 217 0 chr9 89669718 89669833 -34406339 + MIRb SINE MIR 112 251 -17 3 1269 740 261 87 34 chr9 89669965 89670231 -34405941 - B4A SINE B4 -12 280 1 3 1269 1221 111 61 0 chr9 89670326 89670507 -34405665 - B2_Mm2 SINE B2 -3 192 1 3 1269 624 62 0 0 chr9 89670823 89670904 -34405268 + (GGGA)n Simple_repeat Simple_repeat 3 83 0 3 1269 482 310 62 0 chr9 89671114 89671259 -34404913 + MER5A DNA MER1_type 2 155 -34 3 1269 721 283 136 24 chr9 89671528 89671778 -34404394 + B4A SINE B4 2 279 -13 3 1269 211 200 0 0 chr9 89671794 89671829 -34404343 + (CATG)n Simple_repeat Simple_repeat 3 37 0 3 1269 226 302 136 72 chr9 89672561 89672686 -34403486 - B1F2 SINE Alu -16 133 1 3 1269 1439 296 69 42 chr9 89673167 89673264 -34402908 - Lx8 LINE L1 -9 7464 7364 3 1269 247 25 50 0 chr9 89673272 89673312 -34402860 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 3 1269 1156 56 0 20 chr9 89673312 89673449 -34402723 - B1_Mus1 SINE Alu -12 136 1 3 1269 1439 296 69 42 chr9 89673449 89673943 -34402229 - Lx8 LINE L1 -110 7363 6857 3 1269 216 227 105 74 chr9 89675390 89675485 -34400687 - L2c LINE L2 -234 3153 3056 3 1269 1051 270 104 62 chr9 89676136 89676462 -34399710 + RLTR28B LTR ERVL 1 356 -125 3 1269 297 0 0 0 chr9 89676462 89676495 -34399677 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1269 1051 270 104 62 chr9 89676495 89676590 -34399582 + RLTR28B LTR ERVL 357 440 -41 3 1269 641 348 100 31 chr9 89676625 89677014 -34399158 - LTR16A LTR ERVL 0 451 36 3 1269 811 286 30 51 chr9 89677163 89677458 -34398714 + B4A SINE B4 1 289 -3 3 1269 259 299 20 49 chr9 89677820 89677922 -34398250 - ERVL-E-int LTR ERVL -788 4879 4781 3 1269 189 288 112 85 chr9 89678390 89678614 -34397558 + L2a LINE L2 3186 3415 -11 3 1269 359 325 46 30 chr9 89678681 89678878 -34397294 - MIRb SINE MIR 0 268 69 3 1269 239 188 44 111 chr9 89678918 89679008 -34397164 + B3A SINE B2 6 89 -109 3 1269 221 324 39 126 chr9 89678936 89678995 -34397177 + ID SINE ID 27 74 -150 3 1269 213 322 8 106 chr9 89678995 89679127 -34397045 + PB1D9 SINE Alu 2 120 0 3 1269 710 327 44 112 chr9 89679866 89680410 -34395762 + Lx8 LINE L1 6959 7465 -8 3 1269 1665 298 59 13 chr9 89680628 89681309 -34394863 + L1MB1 LINE L1 5384 6095 -73 3 1269 986 214 44 48 chr9 89681614 89681909 -34394263 + Lx7 LINE L1 7403 7696 0 3 1269 705 261 6 18 chr9 89682846 89683010 -34393162 + ID_B1 SINE B4 5 166 -58 3 1269 337 276 29 58 chr9 89682929 89683033 -34393139 + B1F SINE Alu 5 105 -44 3 1269 342 188 0 0 chr9 89683470 89683534 -34392638 + ID_B1 SINE B4 156 219 -5 3 1269 462 346 143 27 chr9 89683651 89683945 -34392227 - LTR89 LTR ERVL? -38 841 514 3 1269 27 0 0 0 chr9 89685155 89685182 -34390990 + AT_rich Low_complexity Low_complexity 1 27 0 3 1269 434 223 196 0 chr9 89685221 89685333 -34390839 - RSINE1 SINE B4 -29 136 3 3 1269 1865 199 58 58 chr9 89686761 89687209 -34388963 + RLTR17 LTR ERVK 82 529 -163 3 1269 299 330 0 94 chr9 89687340 89687353 -34388819 + MT2B LTR ERVL 155 156 -445 3 1269 592 266 0 0 chr9 89687353 89687462 -34388710 + B1_Mur1 SINE Alu 4 112 -37 3 1269 280 243 38 63 chr9 89687728 89687807 -34388365 + L2c LINE L2 3306 3382 -5 3 1269 253 232 36 0 chr9 89687824 89687880 -34388292 + (TGGG)n Simple_repeat Simple_repeat 2 59 0 3 1269 186 103 0 0 chr9 89687883 89687912 -34388260 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 3 1269 693 296 154 40 chr9 89688204 89688598 -34387574 + MLT1G1 LTR MaLR 41 537 -42 3 1269 514 229 43 25 chr9 89688775 89688936 -34387236 + L1MA4 LINE L1 5775 5938 -362 3 1269 765 257 25 6 chr9 89689623 89689805 -34386367 + B3A SINE B2 1 178 -38 3 1269 24 32 0 0 chr9 89689815 89689846 -34386326 + AT_rich Low_complexity Low_complexity 1 31 0 3 1269 1301 190 192 41 chr9 89690112 89690503 -34385669 - Lx7 LINE L1 0 7696 7247 3 1269 305 333 11 0 chr9 89690600 89690690 -34385482 - Charlie5 DNA MER1_type -2513 111 21 3 1269 246 32 0 0 chr9 89690920 89690951 -34385221 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 3 1269 659 315 0 0 chr9 89690974 89691120 -34385052 - RSINE1 SINE B4 -18 147 2 3 1269 346 331 120 19 chr9 89691265 89691524 -34384648 - B4A SINE B4 -6 286 2 3 1269 282 125 0 0 chr9 89692023 89692071 -34384101 + (CACCAT)n Simple_repeat Simple_repeat 4 51 0 3 1269 316 343 29 36 chr9 89692238 89692377 -34383795 - MER45A DNA Tip100 -1 177 40 3 1269 599 271 15 8 chr9 89693382 89693512 -34382660 + RSINE1 SINE B4 3 133 -32 3 1269 197 258 78 31 chr9 89695493 89695557 -34380615 + MER5B DNA MER1_type 58 124 -54 3 1269 634 306 71 50 chr9 89695761 89696043 -34380129 + B4A SINE B4 5 292 0 3 1269 266 106 0 21 chr9 89696052 89696100 -34380072 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1269 364 252 119 20 chr9 89696129 89696230 -34379942 + PB1D10 SINE Alu 7 117 0 3 1269 649 296 50 15 chr9 89698091 89698290 -34377882 - MER2 DNA MER2_type 0 345 140 3 1269 911 189 71 0 chr9 89698296 89698492 -34377680 + B3 SINE B2 6 215 -1 3 1269 2228 184 25 0 chr9 89698498 89698894 -34377278 + Lx5 LINE L1 6644 7049 -1 3 1269 270 0 0 0 chr9 89700191 89700221 -34375951 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1269 245 328 0 0 chr9 89700856 89700917 -34375255 + B4A SINE B4 2 62 -230 3 1269 411 21 0 0 chr9 89701040 89701088 -34375084 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1269 285 274 109 17 chr9 89703334 89703453 -34372719 + L2a LINE L2 3297 3426 0 3 1269 708 319 146 10 chr9 89704214 89704509 -34371663 + MLT1A0 LTR MaLR 29 363 -2 3 1269 3910 31 0 0 chr9 89704521 89704975 -34371197 + L1Md_F2 LINE L1 5133 5586 -297 3 1269 8139 25 9 76 chr9 89704976 89706042 -34370130 + L1Md_F2 LINE L1 5588 6582 0 3 1269 292 299 73 144 chr9 89707419 89707742 -34368430 + MLT1C LTR MaLR 1 343 -252 3 1269 839 325 8 48 chr9 89707876 89708144 -34368028 + B4 SINE B4 30 286 -6 3 1269 200 167 21 0 chr9 89708151 89708199 -34367973 + GA-rich Low_complexity Low_complexity 1 49 0 3 1269 735 50 0 0 chr9 89709129 89709229 -34366943 + (TC)n Simple_repeat Simple_repeat 1 100 0 3 1269 207 0 0 0 chr9 89709229 89709251 -34366921 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1269 450 181 36 14 chr9 89709538 89709678 -34366494 + Lx9 LINE L1 7502 7644 0 3 1269 513 315 71 18 chr9 89709712 89709915 -34366257 + MLT1C LTR MaLR 279 654 0 3 1269 234 226 0 102 chr9 89710084 89710143 -34366029 + Lx8 LINE L1 7111 7163 -310 3 1269 362 302 170 18 chr9 89710265 89710403 -34365769 + RMER15 LTR ERVL 346 507 -68 3 1269 180 0 0 0 chr9 89710403 89710423 -34365749 + (TCTCG)n Simple_repeat Simple_repeat 2 21 0 3 1269 362 302 170 18 chr9 89710423 89710449 -34365723 + RMER15 LTR ERVL 508 534 -41 3 1269 225 291 0 89 chr9 89711077 89711247 -34364925 + CT-rich Low_complexity Low_complexity 1 154 0 3 1269 830 65 9 0 chr9 89711476 89711583 -34364589 - B2_Mm1t SINE B2 -6 187 80 3 1269 2139 141 6 39 chr9 89711964 89712326 -34363846 - L1_Mur2 LINE L1 -898 4979 4630 3 1269 6471 41 0 0 chr9 89712517 89713277 -34362895 + L1Md_T LINE L1 5823 6582 0 3 1269 212 233 115 16 chr9 89713294 89713355 -34362817 - PB1D7 SINE Alu -6 114 48 3 1269 21 36 0 0 chr9 89713993 89714021 -34362151 + AT_rich Low_complexity Low_complexity 1 28 0 3 1269 258 32 0 0 chr9 89714211 89714242 -34361930 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1269 204 145 0 80 chr9 89714289 89714364 -34361808 + T-rich Low_complexity Low_complexity 3 71 0 3 1269 216 175 0 0 chr9 89714292 89714332 -34361840 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 3 1269 736 195 73 7 chr9 89714377 89714527 -34361645 + B3A SINE B2 2 161 -37 3 1269 243 308 31 100 chr9 89714628 89714758 -34361414 + MER5B DNA MER1_type 4 124 -54 3 1269 184 200 0 0 chr9 89715729 89715764 -34360408 + MER5B DNA MER1_type 127 161 -17 3 1269 456 35 0 0 chr9 89715964 89716022 -34360150 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1269 510 17 0 0 chr9 89716551 89716610 -34359562 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1269 1196 169 9 32 chr9 89719167 89719387 -34356785 + URR1B DNA MER1_type 1 215 -10 3 1269 253 200 16 48 chr9 89720586 89720649 -34355523 + RMER15 LTR ERVL 405 465 -110 3 1269 432 218 6 25 chr9 89720874 89721034 -34355138 + (CATA)n Simple_repeat Simple_repeat 1 157 0 3 1269 308 279 73 31 chr9 89721083 89721179 -34354993 + MIRb SINE MIR 101 200 -68 3 1269 225 0 0 0 chr9 89721472 89721497 -34354675 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 1269 349 288 35 154 chr9 89722668 89722927 -34353245 + MTEa LTR MaLR 16 243 -136 4 1269 498 229 0 0 chr9 89723756 89724040 -34352132 + (TG)n Simple_repeat Simple_repeat 1 284 0 4 1269 507 308 74 48 chr9 89724069 89724379 -34351793 - Arthur1 DNA Tip100 -47 3900 3583 4 1269 678 323 68 44 chr9 89724444 89724784 -34351388 - ORR1E LTR MaLR 0 359 12 4 1269 1184 301 71 110 chr9 89724791 89725241 -34350931 - Arthur1 DNA Tip100 -456 3491 3109 4 1269 680 302 93 19 chr9 89725241 89725511 -34350661 - B4A SINE B4 -2 290 1 4 1269 1184 301 71 110 chr9 89725511 89725835 -34350337 - Arthur1 DNA Tip100 -839 3108 2747 4 1269 276 331 153 18 chr9 89725854 89726017 -34350155 + Arthur1 DNA Tip100 257 441 -3506 4 1269 329 267 77 29 chr9 89726056 89726160 -34350012 - Arthur1 DNA Tip100 -3716 231 123 4 1269 351 0 0 0 chr9 89726249 89726288 -34349884 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1269 271 313 30 0 chr9 89726769 89726868 -34349304 - MIRc SINE MIR -65 203 102 4 1269 452 272 18 71 chr9 89728707 89728877 -34347295 - MLT1C LTR MaLR -7 460 300 4 1269 610 235 20 20 chr9 89728898 89729197 -34346975 + CT-rich Low_complexity Low_complexity 1 299 0 4 1269 411 323 6 68 chr9 89730187 89730363 -34345809 - MER20 DNA MER1_type -3 216 52 4 1269 607 256 76 30 chr9 89730507 89730704 -34345468 - B4A SINE B4 -86 206 1 4 1269 208 323 16 31 chr9 89731222 89731286 -34344886 - MIRc SINE MIR -110 158 96 4 1269 251 322 88 34 chr9 89732995 89733143 -34343029 - ORR1D1 LTR MaLR -213 161 6 4 1269 341 117 17 0 chr9 89733874 89733934 -34342238 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1269 532 311 43 82 chr9 89733962 89734193 -34341979 - B4A SINE B4 -19 273 52 4 1269 3353 288 130 12 chr9 89734232 89735340 -34340832 - Lx8 LINE L1 -5 7468 6230 4 1269 477 0 0 0 chr9 89735342 89735395 -34340777 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1269 340 262 136 0 chr9 89735940 89736043 -34340129 + PB1D10 SINE Alu 1 117 0 4 1269 296 281 31 20 chr9 89736509 89736607 -34339565 - MIR SINE MIR -72 190 92 4 1269 246 218 36 0 chr9 89736664 89736719 -34339453 - MIRc SINE MIR -101 167 111 4 1269 193 268 39 118 chr9 89737125 89737252 -34338920 - MIR3 SINE MIR -25 183 67 4 1269 275 322 68 62 chr9 89737802 89737964 -34338208 + MLT1H LTR MaLR 2 164 -385 4 1269 1017 230 14 5 chr9 89738582 89738796 -34337376 - B3 SINE B2 0 216 1 4 1269 288 280 108 39 chr9 89738802 89738932 -34337240 + L2a LINE L2 3249 3387 -39 4 1269 1734 217 190 17 chr9 89738949 89739378 -34336794 + Lx9 LINE L1 7007 7491 -153 4 1269 194 91 30 0 chr9 89739378 89739411 -34336761 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1269 1734 217 190 17 chr9 89739411 89739507 -34336665 + Lx9 LINE L1 7492 7623 -21 4 1269 402 261 112 9 chr9 89739507 89739529 -34336643 + ID_B1 SINE B4 60 93 -131 4 1269 631 111 167 0 chr9 89739529 89739637 -34336535 + B1_Mus1 SINE Alu 2 127 -21 4 1269 267 336 28 9 chr9 89739658 89739766 -34336406 + PB1D10 SINE Alu 2 111 -6 4 1269 345 47 0 0 chr9 89739786 89739829 -34336343 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 4 1269 459 302 100 79 chr9 89739956 89740236 -34335936 + MLT1A LTR MaLR 88 373 -1 4 1269 182 340 56 37 chr9 89741245 89741352 -34334820 + L2 LINE L2 2649 2757 -662 4 1269 2130 206 12 17 chr9 89741614 89742023 -34334149 - MTB_Mm LTR MaLR 0 407 1 4 1269 325 273 97 70 chr9 89742044 89742229 -34333943 + ORR1E LTR MaLR 165 354 -5 4 1269 238 180 20 20 chr9 89742506 89742557 -34333615 + RMER15 LTR ERVL 1 51 -524 4 1269 622 270 164 37 chr9 89742639 89742908 -34333264 + RMER15 LTR ERVL 273 575 0 4 1269 496 309 40 0 chr9 89743120 89743269 -34332903 - MLT1L LTR MaLR -324 286 132 4 1269 362 236 0 159 chr9 89743704 89743830 -34332342 - MIRc SINE MIR -35 233 125 4 1269 249 307 22 11 chr9 89743985 89744074 -34332098 - Tigger1 DNA MER2_type -963 1455 1366 4 1269 204 125 0 0 chr9 89744207 89744239 -34331933 + (GGAGAA)n Simple_repeat Simple_repeat 2 33 0 4 1269 425 278 93 85 chr9 89744239 89744475 -34331697 + L1M5 LINE L1 5125 5362 -784 4 1269 180 0 0 0 chr9 89744767 89744787 -34331385 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1269 1239 287 20 33 chr9 89745221 89745613 -34330559 - MLT1E1A LTR MaLR -2 678 301 4 1269 678 244 16 0 chr9 89745900 89746023 -34330149 - RSINE1 SINE B4 -39 126 2 4 1269 189 107 0 0 chr9 89746371 89746399 -34329773 + (CCA)n Simple_repeat Simple_repeat 3 30 0 4 1269 199 298 0 17 chr9 89746939 89746997 -34329175 - L3 LINE CR1 -109 4380 4324 4 1269 815 297 141 9 chr9 89747182 89747522 -34328650 - MLT1A1 LTR MaLR -3 405 21 4 1269 1423 243 71 6 chr9 89747554 89747894 -34328278 + ORR1D2 LTR MaLR 9 370 0 4 1269 537 318 146 8 chr9 89748060 89748320 -34327852 + RMER15 LTR ERVL 265 560 -15 4 1269 915 278 32 100 chr9 89748922 89749202 -34326970 - B4A SINE B4 -2 290 30 4 1269 281 247 30 79 chr9 89749318 89749419 -34326753 - MER112 DNA MER1_type -151 110 15 4 1269 218 261 49 9 chr9 89750577 89750676 -34325496 + MIRc SINE MIR 22 132 -136 4 1269 343 285 116 37 chr9 89750879 89751043 -34325129 + MLT2F LTR ERVL 254 430 -233 4 1269 388 288 59 95 chr9 89751173 89751342 -34324830 + MLT2F LTR ERVL 442 604 -59 4 1269 911 181 12 10 chr9 89751345 89751835 -34324337 + (TAGA)n Simple_repeat Simple_repeat 1 490 0 4 1269 184 224 20 39 chr9 89751844 89751895 -34324277 + MIR SINE MIR 209 258 -4 4 1269 211 250 21 0 chr9 89752582 89752630 -34323542 - MIRb SINE MIR -30 238 190 4 1269 199 320 51 0 chr9 89752943 89753021 -34323151 - L2 LINE L2 -619 2800 2719 4 1269 183 190 47 23 chr9 89753476 89753519 -34322653 + L2a LINE L2 3340 3383 -43 4 1269 258 298 138 0 chr9 89753782 89753876 -34322296 + MLT1A1 LTR MaLR 4 110 -255 4 1269 509 305 0 8 chr9 89753935 89754067 -34322105 + MLT1A1 LTR MaLR 242 372 -36 4 1269 409 110 0 27 chr9 89754177 89754252 -34321920 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1269 22 0 0 0 chr9 89754428 89754450 -34321722 + AT_rich Low_complexity Low_complexity 1 22 0 4 1269 443 254 50 78 chr9 89754566 89754588 -34321584 - B4A SINE B4 -49 243 221 4 1269 269 26 0 26 chr9 89754588 89754627 -34321545 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1269 1063 15 0 15 chr9 89754627 89754760 -34321412 - B1_Mus2 SINE Alu -8 139 9 4 1269 443 254 50 78 chr9 89754760 89754783 -34321389 - B4A SINE B4 -72 220 71 4 1269 488 268 11 8 chr9 89754958 89755097 -34321075 - L1MA4A LINE L1 -365 5938 5763 4 1269 322 361 86 21 chr9 89755218 89755544 -34320628 - L1MC LINE L1 -2153 5729 5383 4 1269 1092 243 104 28 chr9 89755745 89756106 -34320066 + MTD LTR MaLR 3 393 -7 4 1269 1086 251 50 15 chr9 89756268 89756611 -34319561 - L1MB1 LINE L1 -93 6075 5721 4 1269 324 354 96 98 chr9 89757543 89757929 -34318243 - MLT1N2-int LTR MaLR -67 1320 936 4 1269 338 331 87 43 chr9 89758957 89759118 -34317054 - MLT1N2 LTR MaLR -7 555 388 4 1269 869 295 33 25 chr9 89759894 89760137 -34316035 - B4 SINE B4 0 292 48 4 1269 429 20 0 0 chr9 89760903 89760953 -34315219 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1269 470 254 17 17 chr9 89761429 89761545 -34314627 - PB1D7 SINE Alu -1 119 4 4 1269 442 186 114 79 chr9 89761628 89761768 -34314404 - B3A SINE B2 -53 145 1 4 1269 481 190 9 48 chr9 89762316 89762421 -34313751 - B1_Mur1 SINE Alu -1 148 48 4 1269 522 0 0 0 chr9 89762435 89762493 -34313679 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1269 451 256 37 52 chr9 89762681 89762716 -34313456 - ID_B1 SINE B4 -21 203 109 4 1269 452 214 101 0 chr9 89762716 89762805 -34313367 - B1F2 SINE Alu -51 98 1 4 1269 451 256 37 52 chr9 89762805 89762817 -34313355 - ID_B1 SINE B4 -21 108 70 4 1269 243 125 0 0 chr9 89763751 89763791 -34312381 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 4 1269 577 252 7 7 chr9 89764158 89764294 -34311878 - ID_B1 SINE B4 -1 223 88 4 1269 205 186 0 0 chr9 89764428 89764471 -34311701 + A-rich Low_complexity Low_complexity 1 43 0 4 1269 545 220 4 37 chr9 89764842 89765115 -34311057 + GA-rich Low_complexity Low_complexity 1 263 0 4 1269 195 42 0 0 chr9 89765340 89765364 -34310808 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1269 714 282 126 15 chr9 89765934 89766204 -34309968 - MER67C LTR ERV1 0 711 412 4 1269 500 30 0 15 chr9 89766287 89766354 -34309818 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1269 443 267 105 121 chr9 89766429 89766668 -34309504 - B4 SINE B4 -26 266 32 4 1269 842 243 48 67 chr9 89766707 89766976 -34309196 - MER67C LTR ERV1 -447 264 1 4 1269 270 56 0 0 chr9 89767296 89767332 -34308840 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1269 795 283 83 36 chr9 89767350 89767603 -34308569 - B4 SINE B4 0 292 28 4 1269 585 225 62 14 chr9 89768129 89768273 -34307899 - RMER5 LTR ERV1 0 534 384 4 1269 687 273 22 0 chr9 89768327 89768466 -34307706 - RSINE1 SINE B4 -21 144 3 4 1269 690 254 20 49 chr9 89768583 89768786 -34307386 - RMER5 LTR ERV1 -321 213 17 4 1269 921 235 83 116 chr9 89769567 89770053 -34306119 - MT2A LTR ERVL 0 601 3 4 1269 1680 189 107 11 chr9 89770065 89770412 -34305760 + ORR1B1 LTR MaLR 15 394 0 4 1269 257 283 60 80 chr9 89770811 89770911 -34305261 - B4 SINE B4 -192 100 3 4 1269 1009 237 117 56 chr9 89771056 89771485 -34304687 - L1MA7 LINE L1 -6 6285 5831 4 1269 359 254 51 122 chr9 89771462 89771659 -34304513 - L1MA7 LINE L1 -12 6279 6097 4 1269 1127 301 73 55 chr9 89771669 89772646 -34303526 - L1MA7 LINE L1 -445 5846 4848 4 1269 761 216 48 32 chr9 89772660 89772847 -34303325 + B3 SINE B2 27 216 0 4 1269 1047 310 31 25 chr9 89772943 89773390 -34302782 - L1MA7 LINE L1 -1355 4788 4339 4 1269 438 291 10 52 chr9 89773493 89773682 -34302490 + RMER1B Other Other 100 242 -824 4 1269 854 181 23 23 chr9 89773689 89773864 -34302308 + RMER1B Other Other 892 1066 0 4 1269 1189 150 72 5 chr9 89774219 89774427 -34301745 + RMER4B LTR ERVK 17 238 -347 4 1269 286 202 190 0 chr9 89774421 89774500 -34301672 + RMER4B LTR ERVK 145 238 -347 4 1269 202 278 40 34 chr9 89774502 89774651 -34301521 + (CTG)n Simple_repeat Simple_repeat 3 152 0 4 1269 192 188 47 0 chr9 89774667 89774731 -34301441 + (CTG)n Simple_repeat Simple_repeat 3 69 0 4 1269 423 323 18 21 chr9 89774749 89775026 -34301146 + C-rich Low_complexity Low_complexity 1 276 0 4 1269 362 302 22 39 chr9 89775037 89775216 -34300956 + C-rich Low_complexity Low_complexity 3 178 0 4 1269 413 289 17 11 chr9 89775176 89775351 -34300821 + (CTG)n Simple_repeat Simple_repeat 3 178 0 5 1269 423 266 40 0 chr9 89775316 89775551 -34300621 + (CTG)n Simple_repeat Simple_repeat 1 244 0 5 1269 284 325 47 0 chr9 89775528 89775697 -34300475 + C-rich Low_complexity Low_complexity 3 179 0 5 1269 368 285 35 6 chr9 89775699 89775872 -34300300 + (CTG)n Simple_repeat Simple_repeat 3 180 0 5 1269 397 288 32 23 chr9 89775918 89776270 -34299902 + C-rich Low_complexity Low_complexity 1 355 0 5 1269 320 313 18 12 chr9 89776289 89776457 -34299715 + (CTG)n Simple_repeat Simple_repeat 1 169 0 5 1269 222 220 0 0 chr9 89776467 89776526 -34299646 + C-rich Low_complexity Low_complexity 3 61 0 5 1269 580 205 67 18 chr9 89776596 89776784 -34299388 + RMER4B LTR ERVK 343 467 -118 4 1269 363 298 16 16 chr9 89776786 89776909 -34299263 - L1M2 LINE L1 -2291 3852 3730 5 1269 410 238 65 87 chr9 89776923 89777153 -34299019 - L1M2 LINE L1 -2667 3473 3249 5 1269 322 316 53 0 chr9 89777168 89777263 -34298909 - PB1D7 SINE Alu -18 102 3 5 1269 1189 270 53 3 chr9 89777266 89777626 -34298546 - L1M2 LINE L1 -3212 2931 2554 5 1269 500 173 103 0 chr9 89778039 89778151 -34298021 + Lx4B LINE L1 6859 6989 -69 5 1269 180 125 0 0 chr9 89778939 89778971 -34297201 + (TCC)n Simple_repeat Simple_repeat 2 33 0 5 1269 972 120 0 0 chr9 89779180 89779330 -34296842 + (GA)n Simple_repeat Simple_repeat 1 150 0 5 1269 226 207 17 0 chr9 89779445 89779491 -34296681 + CT-rich Low_complexity Low_complexity 16 61 0 5 1269 285 128 0 0 chr9 89779491 89779538 -34296634 + (CAT)n Simple_repeat Simple_repeat 3 49 0 5 1269 226 207 17 0 chr9 89779538 89779549 -34296623 + polypyrimidine Low_complexity Low_complexity 4 15 0 5 1269 376 314 33 0 chr9 89779550 89779703 -34296469 - MLT1H2 LTR MaLR -331 158 1 5 1269 397 233 35 0 chr9 89779756 89779842 -34296330 - PB1D7 SINE Alu -6 114 26 5 1269 821 224 175 34 chr9 89780143 89780434 -34295738 - ORR1D2 LTR MaLR 0 370 39 5 1269 324 0 0 0 chr9 89780943 89780979 -34295193 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1269 1245 256 96 8 chr9 89781500 89781885 -34294287 - MTD LTR MaLR 0 419 1 5 1269 321 421 41 0 chr9 89781972 89782117 -34294055 + MER91A DNA Tip100 44 194 -2 5 1269 328 192 218 0 chr9 89782506 89782584 -34293588 + RSINE1 SINE B4 1 95 -70 5 1269 297 0 0 0 chr9 89782592 89782625 -34293547 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1269 225 65 0 0 chr9 89782810 89782841 -34293331 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 5 1269 378 61 0 0 chr9 89782883 89782932 -34293240 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1269 493 284 81 23 chr9 89782942 89783115 -34293057 + B4A SINE B4 41 223 -69 5 1269 678 58 0 0 chr9 89783115 89783202 -34292970 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 1269 692 225 148 0 chr9 89783251 89783460 -34292712 + MT2A LTR ERVL 294 533 0 5 1270 192 200 0 0 chr9 89784698 89784738 -34291434 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1270 403 203 38 41 chr9 89785118 89785236 -34290936 - B1F1 SINE Alu -1 116 1 5 1270 243 0 0 0 chr9 89785301 89785328 -34290844 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1270 240 200 0 0 chr9 89785328 89785378 -34290794 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1270 479 300 128 31 chr9 89785426 89785684 -34290488 - B4A SINE B4 -2 290 8 5 1270 232 48 48 0 chr9 89785880 89785922 -34290250 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1270 768 38 0 9 chr9 89785922 89786019 -34290153 - B1_Mm SINE Alu -8 139 43 5 1270 312 185 84 24 chr9 89785957 89786040 -34290132 - RLTR25B LTR ERVK -519 509 422 5 1270 183 311 54 0 chr9 89786165 89786239 -34289933 + L2c LINE L2 3258 3335 -52 5 1270 227 216 59 0 chr9 89787247 89787298 -34288874 - PB1D9 SINE Alu -2 118 65 5 1270 510 266 0 0 chr9 89787254 89787367 -34288805 - ID_B1 SINE B4 -9 215 103 5 1270 492 18 0 0 chr9 89787369 89787426 -34288746 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 5 1270 949 305 100 16 chr9 89787575 89788139 -34288033 - L1MD1 LINE L1 -306 5936 5325 5 1270 811 290 194 30 chr9 89788220 89788966 -34287206 - L1MD1 LINE L1 -906 5240 4372 5 1270 930 245 31 91 chr9 89788982 89789269 -34286903 - B4A SINE B4 -14 278 9 5 1270 216 0 0 0 chr9 89789378 89789402 -34286770 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1270 8487 6 0 0 chr9 89789552 89790483 -34285689 + L1Md_A LINE L1 4656 5586 -297 5 1270 9102 8 0 0 chr9 89790483 89791479 -34284693 + L1Md_A LINE L1 5587 6582 0 5 1270 1425 62 28 0 chr9 89791495 89791673 -34284499 + B2_Mm2 SINE B2 2 184 -11 5 1270 954 148 0 0 chr9 89791673 89791835 -34284337 + (GA)n Simple_repeat Simple_repeat 2 163 0 5 1270 228 67 0 0 chr9 89791836 89791866 -34284306 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 5 1270 350 327 47 47 chr9 89791868 89792080 -34284092 + L1MD LINE L1 3599 3810 -2336 5 1270 310 265 50 56 chr9 89792546 89792706 -34283466 + L1MD LINE L1 3852 4010 -2136 5 1270 316 206 40 14 chr9 89792740 89792804 -34283368 + B3A SINE B2 5 71 -127 5 1270 486 75 0 0 chr9 89792804 89792871 -34283301 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1270 1213 107 5 21 chr9 89792938 89793129 -34283043 + B2_Mm1t SINE B2 2 189 -4 5 1270 1639 221 38 49 chr9 89793199 89793647 -34282525 + RMER19C LTR ERVK 138 580 -31 5 1270 450 339 60 19 chr9 89794085 89794350 -34281822 + B4A SINE B4 3 278 -14 5 1270 489 76 0 0 chr9 89794357 89794423 -34281749 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1270 255 260 39 13 chr9 89794956 89795034 -34281138 + L1M3de LINE L1 2057 2136 -4517 5 1270 405 268 26 9 chr9 89795526 89795639 -34280533 - RSINE1 SINE B4 -4 161 47 5 1270 1404 30 0 0 chr9 89795725 89795894 -34280278 + (TTCTCC)n Simple_repeat Simple_repeat 3 171 0 5 1270 1106 110 0 0 chr9 89795941 89796087 -34280085 + B1_Mus2 SINE Alu 2 147 0 5 1270 183 129 0 0 chr9 89796087 89796118 -34280054 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1270 664 87 0 10 chr9 89796499 89796603 -34279569 + B1_Mus2 SINE Alu 14 116 -31 5 1270 372 22 0 0 chr9 89796933 89796978 -34279194 + (ATTG)n Simple_repeat Simple_repeat 2 46 0 5 1270 281 267 111 0 chr9 89797067 89797157 -34279015 - MLT1A0 LTR MaLR -16 349 250 5 1270 408 216 270 0 chr9 89797919 89798030 -34278142 + B1F2 SINE Alu 1 141 -8 5 1270 210 154 0 0 chr9 89798240 89798279 -34277893 + A-rich Low_complexity Low_complexity 1 39 0 5 1270 282 307 22 11 chr9 89798820 89798909 -34277263 + B4A SINE B4 81 170 -122 5 1270 376 264 83 19 chr9 89798830 89798938 -34277234 + PB1 SINE Alu 6 120 -7 5 1270 1085 80 0 0 chr9 89799107 89799245 -34276927 + B1_Mus1 SINE Alu 2 139 -9 5 1270 189 74 0 0 chr9 89799245 89799272 -34276900 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1270 691 250 0 0 chr9 89799383 89799519 -34276653 + B1_Mur3 SINE Alu 4 139 -10 5 1270 21 0 0 0 chr9 89799684 89799705 -34276467 + AT_rich Low_complexity Low_complexity 1 21 0 5 1270 188 35 35 0 chr9 89800280 89800309 -34275863 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1270 432 0 0 0 chr9 89800563 89800611 -34275561 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1270 295 255 270 61 chr9 89800815 89801011 -34275161 - RMER15 LTR ERVL -40 535 299 5 1270 693 126 0 0 chr9 89801119 89801230 -34274942 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 5 1270 436 252 101 58 chr9 89801230 89801369 -34274803 + ORR1D1 LTR MaLR 12 156 -218 5 1270 351 143 127 14 chr9 89801385 89801456 -34274716 + ORR1D1 LTR MaLR 300 378 -6 5 1270 194 302 77 31 chr9 89802216 89802281 -34273891 + L2b LINE L2 3263 3330 -45 5 1270 283 275 12 0 chr9 89803000 89803080 -34273092 + PB1D10 SINE Alu 31 111 -6 5 1270 450 0 0 0 chr9 89803325 89803375 -34272797 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1270 189 0 0 0 chr9 89803427 89803448 -34272724 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1270 684 98 0 0 chr9 89804252 89804354 -34271818 + (TG)n Simple_repeat Simple_repeat 2 103 0 5 1270 213 209 0 0 chr9 89804663 89804730 -34271442 + GA-rich Low_complexity Low_complexity 1 67 0 5 1270 201 154 0 0 chr9 89805490 89805529 -34270643 + C-rich Low_complexity Low_complexity 4 42 0 5 1270 200 261 21 74 chr9 89806136 89806231 -34269941 - MIR3 SINE MIR -10 198 109 5 1270 193 271 68 0 chr9 89807104 89807163 -34269009 - MIR3 SINE MIR -52 156 94 5 1270 918 50 0 0 chr9 89808590 89808710 -34267462 + (GA)n Simple_repeat Simple_repeat 1 120 0 5 1270 283 303 51 32 chr9 89809141 89809298 -34266874 - L1MA6 LINE L1 -14 6286 6127 5 1270 254 278 21 43 chr9 89810475 89810569 -34265603 + Charlie15a DNA MER1_type 88 179 -45 5 1270 276 275 14 0 chr9 89810670 89810752 -34265420 - ID4 SINE ID -57 95 13 5 1270 506 174 102 0 chr9 89810805 89810903 -34265269 - PB1 SINE Alu -19 108 1 5 1270 183 291 48 48 chr9 89811006 89811089 -34265083 - MIRb SINE MIR -69 199 117 5 1270 360 269 0 27 chr9 89811319 89811430 -34264742 + PB1D9 SINE Alu 2 109 -11 5 1270 948 18 0 0 chr9 89811923 89812033 -34264139 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 1270 317 250 50 0 chr9 89814200 89814280 -34261892 - PB1D10 SINE Alu -6 111 28 5 1270 515 217 43 21 chr9 89815492 89815633 -34260539 + B4A SINE B4 1 144 -148 5 1270 315 192 0 0 chr9 89815715 89815788 -34260384 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1270 306 0 0 0 chr9 89817555 89817589 -34258583 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1270 199 264 125 0 chr9 89818236 89818308 -34257864 - MIR SINE MIR -25 237 157 5 1270 2246 127 90 16 chr9 89819217 89819584 -34256588 - ORR1B1 LTR MaLR 0 394 1 5 1270 726 103 9 0 chr9 89819584 89819700 -34256472 - ORR1B1-int LTR MaLR 0 1370 1254 5 1270 1725 192 92 17 chr9 89819698 89820182 -34255990 - ORR1B1-int LTR MaLR -422 1087 624 5 1270 651 161 45 316 chr9 89820017 89820371 -34255801 - MT2B LTR ERVL -343 258 1 5 1270 2885 189 7 101 chr9 89820398 89821128 -34255044 - ORR1B1-int LTR MaLR -1323 640 5 5 1270 829 260 122 3 chr9 89821128 89821490 -34254682 + L1ME2z LINE L1 5650 6062 -102 5 1270 7260 75 26 38 chr9 89822050 89823045 -34253127 - RLTR13C1 LTR ERVK 0 983 1 5 1270 207 0 0 0 chr9 89823162 89823185 -34252987 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1270 464 301 59 0 chr9 89823386 89823522 -34252650 - MLT1E3 LTR MaLR -9 615 472 6 1270 189 0 0 0 chr9 89824019 89824040 -34252132 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1270 225 0 0 0 chr9 89824044 89824069 -34252103 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1270 281 260 62 12 chr9 89824715 89824812 -34251360 - MTEa LTR MaLR -2 377 282 6 1270 3147 94 4 21 chr9 89825048 89825526 -34250646 - MusHAL1 LINE L1 0 2712 2243 6 1270 32072 116 22 11 chr9 89825532 89831696 -34244476 - L1_Mus2 LINE L1 0 6566 238 6 1270 16202 66 42 1 chr9 89831700 89834432 -34241740 - L1VL4 LINE L1 -454 3105 249 6 1270 1004 310 71 62 chr9 89834523 89834946 -34241226 - MTE-int LTR MaLR -27 1553 1127 6 1270 750 352 52 40 chr9 89835686 89836032 -34240140 - MTE-int LTR MaLR -491 1089 740 6 1270 300 316 10 102 chr9 89836165 89836332 -34239840 - B4 SINE B4 -147 145 2 6 1270 322 304 14 36 chr9 89836436 89836499 -34239673 + polypurine Low_complexity Low_complexity 4 64 0 6 1270 584 50 0 12 chr9 89836499 89836580 -34239592 + (GAGAA)n Simple_repeat Simple_repeat 1 80 0 6 1270 322 304 14 36 chr9 89836580 89836656 -34239516 + polypurine Low_complexity Low_complexity 65 140 0 6 1270 1379 61 72 0 chr9 89836949 89837129 -34239043 + B2_Mm2 SINE B2 2 194 -1 6 1270 443 322 63 131 chr9 89837726 89838076 -34238096 - MTEa LTR MaLR -42 337 12 6 1270 243 88 0 0 chr9 89839377 89839411 -34236761 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1270 707 214 7 7 chr9 89840824 89840970 -34235202 + B1_Mus1 SINE Alu 3 148 0 6 1270 266 273 114 16 chr9 89840982 89841105 -34235067 - MIRc SINE MIR -132 136 2 6 1270 564 91 0 0 chr9 89841239 89841327 -34234845 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 1270 567 37 90 18 chr9 89841339 89841450 -34234722 + (CAGAGA)n Simple_repeat Simple_repeat 3 121 0 6 1270 283 217 116 0 chr9 89842329 89842398 -34233774 - PB1D10 SINE Alu 0 117 41 6 1270 458 267 101 22 chr9 89842643 89842781 -34233391 + RSINE1 SINE B4 16 164 -1 6 1270 734 273 12 6 chr9 89842936 89843102 -34233070 - B3 SINE B2 -2 214 48 6 1270 315 0 0 0 chr9 89843290 89843325 -34232847 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1270 208 323 73 31 chr9 89843824 89843920 -34232252 - L2b LINE L2 -32 3343 3244 6 1270 645 281 93 12 chr9 89844320 89844575 -34231597 + L1MA4 LINE L1 5671 5943 -360 6 1270 470 70 14 0 chr9 89844575 89844646 -34231526 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1270 578 285 103 32 chr9 89844646 89844738 -34231434 + L1MA4 LINE L1 5944 6043 -260 6 1270 510 17 0 0 chr9 89845022 89845081 -34231091 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1270 932 275 147 0 chr9 89845120 89845371 -34230801 + B4A SINE B4 1 288 -4 6 1270 258 32 0 0 chr9 89846109 89846140 -34230032 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 1270 447 68 0 0 chr9 89846140 89846198 -34229974 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1270 504 317 57 9 chr9 89846450 89846660 -34229512 + MIR SINE MIR 26 245 -17 6 1270 239 307 82 100 chr9 89846661 89846831 -34229341 - MER102a DNA MER1_type -163 167 1 6 1270 458 297 11 11 chr9 89846915 89847092 -34229080 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1270 453 214 0 43 chr9 89847121 89847210 -34228962 + (CA)n Simple_repeat Simple_repeat 2 87 0 6 1270 1736 155 224 3 chr9 89847210 89847553 -34228619 + MTC LTR MaLR 3 421 0 6 1270 453 214 0 43 chr9 89847553 89847649 -34228523 + (CA)n Simple_repeat Simple_repeat 2 93 0 6 1270 282 324 185 0 chr9 89849215 89849323 -34226849 + MER20 DNA MER1_type 90 217 -2 6 1270 297 303 27 18 chr9 89849420 89849531 -34226641 + BC1_Mm scRNA scRNA 3 114 -38 6 1270 956 282 13 83 chr9 89850719 89851032 -34225140 - B4A SINE B4 0 292 2 6 1270 511 215 80 40 chr9 89851330 89851480 -34224692 - MER58B DNA MER1_type -107 234 79 6 1270 259 370 54 0 chr9 89851480 89851572 -34224600 + ID_B1 SINE B4 80 176 -48 6 1270 331 237 110 30 chr9 89851492 89851592 -34224580 + PB1D9 SINE Alu 11 118 -2 6 1270 226 298 39 116 chr9 89851759 89851888 -34224284 + MamGypLTR3 LTR Gypsy 358 476 -363 6 1270 1050 171 53 5 chr9 89852003 89852209 -34223963 + B3 SINE B2 1 216 0 6 1270 1091 64 35 0 chr9 89852839 89852980 -34223192 + B1_Mus1 SINE Alu 3 148 0 6 1270 397 47 0 30 chr9 89852983 89853049 -34223123 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 6 1270 861 255 26 117 chr9 89853181 89853488 -34222684 + B4 SINE B4 7 285 -7 6 1270 201 39 0 0 chr9 89853505 89853531 -34222641 + (CAGAGA)n Simple_repeat Simple_repeat 3 28 0 6 1270 684 172 35 0 chr9 89853541 89853715 -34222457 + GA-rich Low_complexity Low_complexity 1 180 0 6 1270 381 292 122 101 chr9 89853886 89854172 -34222000 + B4A SINE B4 1 292 0 6 1270 674 123 21 14 chr9 89854184 89854324 -34221848 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 6 1270 805 105 47 0 chr9 89854361 89854532 -34221640 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 6 1270 981 96 19 44 chr9 89854561 89854925 -34221247 + (TAGA)n Simple_repeat Simple_repeat 1 355 0 6 1270 1024 77 24 5 chr9 89854952 89855164 -34221008 + (TAGA)n Simple_repeat Simple_repeat 1 216 0 6 1270 603 134 46 17 chr9 89855191 89855366 -34220806 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 1270 934 143 33 12 chr9 89855415 89856326 -34219846 + (TAGA)n Simple_repeat Simple_repeat 1 930 0 6 1270 693 144 35 0 chr9 89856358 89856532 -34219640 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 1270 985 92 29 0 chr9 89856578 89856751 -34219421 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 6 1270 922 110 29 0 chr9 89856796 89856969 -34219203 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 6 1270 701 94 23 15 chr9 89857016 89857146 -34219026 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 6 1270 770 102 36 12 chr9 89857159 89857327 -34218845 + (TAGA)n Simple_repeat Simple_repeat 2 173 0 6 1270 806 100 35 12 chr9 89857340 89857512 -34218660 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 6 1270 626 113 40 13 chr9 89857525 89857677 -34218495 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 6 1270 726 116 36 16 chr9 89857690 89858085 -34218087 + (TAGA)n Simple_repeat Simple_repeat 1 403 0 6 1270 582 51 0 0 chr9 89858589 89858667 -34217505 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1270 1284 290 95 82 chr9 89858819 89859007 -34217165 + Tigger1 DNA MER2_type 69 277 -2141 6 1270 926 114 15 0 chr9 89859007 89859139 -34217033 + B1_Mur3 SINE Alu 1 134 -15 6 1270 1284 290 95 82 chr9 89859139 89859497 -34216675 + Tigger1 DNA MER2_type 278 622 -1796 6 1270 396 286 172 6 chr9 89859497 89859666 -34216506 + B3A SINE B2 2 198 0 6 1270 1772 294 115 9 chr9 89859644 89860441 -34215731 + Tigger1 DNA MER2_type 571 1476 -942 6 1270 1282 27 0 0 chr9 89860441 89860588 -34215584 - B1_Mus2 SINE Alu 0 147 1 6 1270 1772 276 170 12 chr9 89860588 89861271 -34214901 + Tigger1 DNA MER2_type 1477 2254 -164 6 1270 793 302 62 8 chr9 89861286 89861543 -34214629 + B4A SINE B4 3 273 -19 6 1270 393 288 43 67 chr9 89861611 89861775 -34214397 + Tigger1 DNA MER2_type 2258 2417 -1 6 1270 268 359 15 22 chr9 89862252 89862386 -34213786 - MIRb SINE MIR -117 151 19 6 1270 261 0 0 0 chr9 89863235 89863264 -34212908 + (CTG)n Simple_repeat Simple_repeat 1 29 0 6 1270 668 206 22 7 chr9 89863267 89863404 -34212768 - B1_Mur1 SINE Alu -9 140 2 6 1270 335 242 9 75 chr9 89863876 89863983 -34212189 + B4 SINE B4 1 100 -192 6 1270 456 291 20 31 chr9 89863973 89864152 -34212020 + B3 SINE B2 15 189 -27 6 1270 780 250 26 42 chr9 89864222 89864414 -34211758 + B4 SINE B4 98 286 -6 6 1270 232 342 0 13 chr9 89864429 89864466 -34211706 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1270 2176 115 42 0 chr9 89864466 89864779 -34211393 - ORR1A2 LTR MaLR 0 327 2 6 1270 232 342 0 13 chr9 89864779 89864818 -34211354 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1270 213 294 15 31 chr9 89865651 89865781 -34210391 + CT-rich Low_complexity Low_complexity 6 133 0 6 1270 465 286 27 41 chr9 89866211 89866357 -34209815 + ID_B1 SINE B4 81 224 0 6 1270 616 280 25 57 chr9 89866380 89866454 -34209718 + ID SINE ID 8 76 -148 6 1270 282 306 61 53 chr9 89866454 89866568 -34209604 + PB1D9 SINE Alu 1 115 -5 6 1270 207 236 36 0 chr9 89866932 89866987 -34209185 - L2 LINE L2 -784 2635 2579 6 1270 186 43 0 0 chr9 89868270 89868293 -34207879 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 6 1270 1280 34 0 0 chr9 89868545 89868692 -34207480 - B1_Mm SINE Alu 0 147 1 6 1270 342 0 0 0 chr9 89868840 89868878 -34207294 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1270 259 211 140 0 chr9 89869033 89869090 -34207082 + ID4 SINE ID 8 72 -11 6 1270 180 329 44 89 chr9 89870030 89870120 -34206052 + L3 LINE CR1 4389 4474 -15 6 1270 231 268 36 0 chr9 89871104 89871160 -34205012 + MER117 DNA MER1_type 96 153 -44 6 1270 450 0 0 0 chr9 89871886 89871936 -34204236 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1270 801 236 22 22 chr9 89873068 89873250 -34202922 + B3A SINE B2 1 182 -16 6 1270 319 349 58 23 chr9 89873300 89873439 -34202733 + MIRc SINE MIR 22 169 -99 6 1270 1229 135 16 0 chr9 89873439 89873624 -34202548 + B2_Mm2 SINE B2 2 189 -6 6 1270 319 349 58 23 chr9 89873624 89873657 -34202515 + MIRc SINE MIR 170 200 -68 6 1270 270 294 127 17 chr9 89873731 89873869 -34202303 - MIR SINE MIR -1 267 110 6 1270 361 154 5 37 chr9 89873877 89873960 -34202212 - RMER17C LTR ERVK -359 51 1 6 1270 506 288 288 15 chr9 89874244 89874618 -34201554 - MLT1F1 LTR MaLR -49 520 53 6 1270 912 104 0 0 chr9 89874620 89874754 -34201418 + (TTTC)n Simple_repeat Simple_repeat 1 134 0 6 1270 1211 32 90 7 chr9 89874757 89874912 -34201260 - B2_Mm2 SINE B2 -26 169 2 6 1270 303 269 54 11 chr9 89875050 89875176 -34200996 + MIRb SINE MIR 30 165 -103 6 1270 181 274 63 16 chr9 89876207 89876270 -34199902 + MIRc SINE MIR 85 150 -118 6 1270 351 0 0 0 chr9 89876862 89876901 -34199271 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1270 243 0 0 0 chr9 89877770 89877797 -34198375 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 6 1270 407 261 35 35 chr9 89878401 89878516 -34197656 - PB1D10 SINE Alu 0 117 3 6 1270 297 261 32 21 chr9 89878851 89878945 -34197227 - MIRb SINE MIR -88 180 86 6 1270 765 41 0 0 chr9 89879400 89879497 -34196675 + (TTTTC)n Simple_repeat Simple_repeat 3 99 0 6 1270 685 221 15 7 chr9 89879497 89879634 -34196538 - B1_Mur4 SINE Alu -12 138 1 6 1270 226 289 0 0 chr9 89879945 89879997 -34196175 + CT-rich Low_complexity Low_complexity 3 54 0 6 1270 4415 40 0 0 chr9 89880621 89881124 -34195048 - RLTR1C LTR ERV1 0 503 1 6 1270 739 155 0 4 chr9 89881247 89881460 -34194712 + ORR1A3 LTR MaLR 1 318 -8 6 1270 4667 156 87 10 chr9 89881464 89882372 -34193800 + ORR1A3-int LTR MaLR 1 978 -985 6 1270 784 105 9 0 chr9 89882358 89882472 -34193700 + ORR1A3 LTR MaLR 211 325 -1 6 1270 3215 69 2 5 chr9 89884199 89884607 -34191565 - MTB_Mm LTR MaLR 0 407 1 6 1270 272 304 0 0 chr9 89884847 89884916 -34191256 - ID4 SINE ID -14 69 1 6 1270 267 326 61 15 chr9 89885049 89885180 -34190992 - MIRb SINE MIR -26 242 106 6 1270 336 274 186 48 chr9 89885254 89885543 -34190629 + MTEa LTR MaLR 33 374 0 6 1270 617 271 0 0 chr9 89886602 89886731 -34189441 + RSINE1 SINE B4 6 134 -31 6 1270 420 71 0 0 chr9 89886736 89886792 -34189380 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1270 288 0 0 0 chr9 89886936 89886968 -34189204 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1270 358 284 25 33 chr9 89886976 89887096 -34189076 + ID_B1 SINE B4 81 199 -25 7 1270 360 0 0 0 chr9 89887178 89887218 -34188954 + (CTG)n Simple_repeat Simple_repeat 1 40 0 7 1270 814 93 23 0 chr9 89887218 89887347 -34188825 + (TTCTCC)n Simple_repeat Simple_repeat 5 136 0 7 1270 1289 118 16 0 chr9 89887408 89887594 -34188578 - B2_Mm2 SINE B2 -5 190 2 7 1270 221 0 35 0 chr9 89888150 89888179 -34187993 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 7 1270 26 30 0 0 chr9 89888200 89888233 -34187939 + AT_rich Low_complexity Low_complexity 1 33 0 7 1270 2988 61 11 0 chr9 89890300 89890679 -34185493 - L1_Mus1 LINE L1 0 6567 6185 7 1270 302 0 26 0 chr9 89890989 89891027 -34185145 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 7 1270 986 249 23 18 chr9 89891027 89891234 -34184938 - B4A SINE B4 -78 214 6 7 1270 414 225 0 0 chr9 89891237 89891379 -34184793 + (CA)n Simple_repeat Simple_repeat 1 142 0 7 1270 269 224 60 0 chr9 89891546 89891613 -34184559 + MER5A1 DNA MER1_type 1 71 -95 7 1270 224 175 0 24 chr9 89891618 89891659 -34184513 + ID SINE ID 2 41 -183 7 1270 949 142 72 24 chr9 89891660 89891826 -34184346 + Lx7 LINE L1 7160 7333 -363 7 1270 515 226 112 29 chr9 89892480 89892721 -34183451 + Lx7 LINE L1 7436 7696 0 7 1270 778 284 20 35 chr9 89892730 89892931 -34183241 + ID_B1 SINE B4 27 224 0 7 1270 1308 79 0 0 chr9 89892934 89893112 -34183060 + (GA)n Simple_repeat Simple_repeat 2 179 0 7 1270 307 213 0 76 chr9 89893177 89893243 -34182929 - ID4_ SINE ID -18 65 5 7 1270 225 265 0 0 chr9 89893316 89893365 -34182807 - MER103 DNA DNA -46 120 72 7 1270 223 250 125 0 chr9 89893996 89894060 -34182112 + ID4_ SINE ID 3 74 -9 7 1270 347 227 73 66 chr9 89894481 89894618 -34181554 + B1F SINE Alu 3 140 -9 7 1270 238 43 0 80 chr9 89894655 89894705 -34181467 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 7 1270 248 170 0 19 chr9 89894744 89894798 -34181374 + GA-rich Low_complexity Low_complexity 2 54 0 7 1270 254 286 70 70 chr9 89895024 89895152 -34181020 - MIRb SINE MIR -113 155 28 7 1270 534 31 0 0 chr9 89895365 89895429 -34180743 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1270 264 59 0 0 chr9 89896146 89896180 -34179992 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1270 183 132 0 95 chr9 89896572 89896614 -34179558 - L3 LINE CR1 -3324 1165 1128 7 1270 409 230 249 111 chr9 89897500 89897681 -34178491 + ID_B1 SINE B4 4 209 -15 7 1270 249 291 32 95 chr9 89897748 89897843 -34178329 - MER3 DNA MER1_type -1 208 120 7 1270 313 310 61 42 chr9 89898016 89898181 -34177991 + MIRb SINE MIR 41 208 -60 7 1270 423 0 0 0 chr9 89898490 89898537 -34177635 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1270 495 48 0 0 chr9 89898537 89898598 -34177574 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1270 1011 150 0 0 chr9 89898598 89898771 -34177401 + GA-rich Low_complexity Low_complexity 1 173 0 7 1270 3665 134 14 28 chr9 89900061 89900642 -34175530 - RLTR20B3 LTR ERVK 0 577 5 7 1270 2093 177 40 25 chr9 89900646 89901046 -34175126 - MTB_Mm LTR MaLR -1 406 1 7 1270 313 250 54 57 chr9 89901423 89901580 -34174592 - MIR SINE MIR -106 162 3 7 1270 433 58 29 0 chr9 89903901 89903970 -34172202 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1270 221 0 35 0 chr9 89904508 89904537 -34171635 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1270 249 294 93 12 chr9 89905613 89905699 -34170473 - L1MC LINE L1 -2018 4128 4036 7 1270 572 211 47 114 chr9 89905777 89905970 -34170202 - B3A SINE B2 0 216 37 7 1270 316 340 61 49 chr9 89905970 89906134 -34170038 - L1MC LINE L1 -2197 3949 3784 7 1270 288 320 2 1 chr9 89906147 89906260 -34169912 - L1MC LINE L1 -2444 3702 3589 7 1270 496 270 50 69 chr9 89906384 89906543 -34169629 + RSINE1 SINE B4 8 163 -2 7 1270 233 321 23 69 chr9 89906868 89906955 -34169217 + RLTR13D1 LTR ERVK 9 91 -715 7 1270 465 262 93 0 chr9 89907298 89907405 -34168767 - PB1D10 SINE Alu 0 117 1 7 1270 331 210 136 61 chr9 89907460 89907592 -34168580 - L1M5 LINE L1 -1871 4275 4134 7 1270 207 276 59 59 chr9 89909141 89909276 -34166896 - L3 LINE CR1 -3579 910 776 7 1270 202 264 40 40 chr9 89909836 89909911 -34166261 + L3 LINE CR1 895 969 -3520 7 1270 393 331 74 8 chr9 89910243 89910365 -34165807 + RSINE1 SINE B4 3 132 -33 7 1270 207 69 0 0 chr9 89910375 89910404 -34165768 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1270 247 350 12 0 chr9 89911462 89911542 -34164630 + ID2 SINE ID 3 83 0 7 1270 232 374 56 24 chr9 89912461 89912587 -34163585 - MER20B DNA MER1_type -605 178 49 7 1270 360 232 118 35 chr9 89914127 89914212 -34161960 + ID_B1 SINE B4 3 94 -130 7 1270 251 195 43 109 chr9 89914167 89914259 -34161913 + B1_Mur4 SINE Alu 63 148 -2 7 1271 504 0 0 0 chr9 89915960 89916016 -34160156 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1271 599 318 32 26 chr9 89916592 89916747 -34159425 - RSINE1 SINE B4 0 165 10 7 1271 224 338 95 0 chr9 89916758 89916832 -34159340 - ID2 SINE ID -2 81 1 7 1271 913 224 93 0 chr9 89917168 89917373 -34158799 + ID_B1 SINE B4 1 224 0 7 1271 240 59 0 0 chr9 89917373 89917407 -34158765 + (CAAAAA)n Simple_repeat Simple_repeat 6 39 0 7 1271 715 164 77 63 chr9 89917419 89917562 -34158610 + B1_Mur3 SINE Alu 5 149 0 7 1271 327 319 100 14 chr9 89917640 89917780 -34158392 - L2a LINE L2 -1 3425 3274 7 1271 323 155 0 155 chr9 89917786 89917870 -34158302 + ID4_ SINE ID 13 83 0 7 1271 483 18 0 0 chr9 89917881 89917937 -34158235 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1271 310 208 90 77 chr9 89917960 89918038 -34158134 + RSINE1 SINE B4 69 147 -18 7 1271 515 56 14 0 chr9 89918043 89918114 -34158058 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1271 372 43 0 0 chr9 89918355 89918401 -34157771 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1271 488 180 14 164 chr9 89918436 89918582 -34157590 - B1_Mur1 SINE Alu 0 149 26 7 1271 278 160 0 0 chr9 89918583 89918633 -34157539 - ID SINE ID -172 52 3 7 1271 315 291 82 159 chr9 89918669 89918691 -34157481 + B4 SINE B4 2 22 -270 7 1271 960 170 155 0 chr9 89918691 89918885 -34157287 + URR1B DNA MER1_type 1 224 -1 7 1271 315 291 82 159 chr9 89918885 89919073 -34157099 + B4 SINE B4 23 203 -89 7 1271 2134 122 66 17 chr9 89919073 89919423 -34156749 - ORR1B2 LTR MaLR 0 367 1 7 1271 315 291 82 159 chr9 89919423 89919526 -34156646 + B4 SINE B4 204 292 0 7 1271 247 247 111 0 chr9 89920589 89920670 -34155502 - L1ME2z LINE L1 -20 6424 6335 7 1271 225 154 0 0 chr9 89920723 89920762 -34155410 + A-rich Low_complexity Low_complexity 1 39 0 7 1271 396 244 20 127 chr9 89920881 89921031 -34155141 + MT2B LTR ERVL 131 264 -337 7 1271 888 145 0 21 chr9 89920921 89921062 -34155110 + B1_Mur4 SINE Alu 6 143 -7 7 1271 249 159 0 0 chr9 89921064 89921108 -34155064 + GA-rich Low_complexity Low_complexity 3 46 0 7 1271 216 288 25 76 chr9 89921144 89921223 -34154949 + PB1D10 SINE Alu 25 99 -18 7 1271 722 279 0 7 chr9 89921299 89921447 -34154725 + B1F SINE Alu 3 149 0 7 1271 260 111 22 0 chr9 89922034 89922079 -34154093 + (AGGGGG)n Simple_repeat Simple_repeat 2 47 0 7 1271 679 200 67 91 chr9 89922425 89922590 -34153582 + RSINE1 SINE B4 3 163 -2 7 1271 1154 271 103 17 chr9 89923077 89923426 -34152746 + MTEa LTR MaLR 1 379 0 7 1271 509 221 197 85 chr9 89923586 89923626 -34152546 + B3 SINE B2 1 39 -177 7 1271 1139 69 21 0 chr9 89923626 89923770 -34152402 + B1_Mus2 SINE Alu 1 147 0 7 1271 509 221 197 85 chr9 89923770 89923917 -34152255 + B3 SINE B2 40 209 -7 7 1271 188 111 0 27 chr9 89924037 89924074 -34152098 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1271 7380 83 30 31 chr9 89924075 89925176 -34150996 + Lx3_Mus LINE L1 5910 7009 0 7 1271 234 272 133 11 chr9 89925269 89925366 -34150806 + PB1D10 SINE Alu 6 118 -2 7 1271 1059 264 42 56 chr9 89925389 89925548 -34150624 + B4 SINE B4 2 162 -130 7 1271 2490 78 6 9 chr9 89925548 89925873 -34150299 - ORR1A2 LTR MaLR -2 325 2 7 1271 1059 280 36 48 chr9 89925873 89926026 -34150146 + B4 SINE B4 66 282 -10 7 1271 763 207 148 10 chr9 89926146 89926357 -34149815 + 7SK RNA RNA 3 242 -89 7 1271 898 177 0 26 chr9 89926492 89926643 -34149529 - B1_Mur1 SINE Alu 0 149 3 7 1271 407 318 72 48 chr9 89926803 89927011 -34149161 - B4A SINE B4 -78 214 2 7 1271 1607 153 234 3 chr9 89927126 89927421 -34148751 + ORR1B2 LTR MaLR 1 363 -4 7 1271 320 236 42 0 chr9 89927519 89927591 -34148581 + BC1_Mm scRNA scRNA 5 79 -73 7 1271 752 280 293 10 chr9 89927746 89928037 -34148135 - MTE2b LTR MaLR -4 375 3 7 1271 288 0 0 0 chr9 89928285 89928317 -34147855 + (CCTG)n Simple_repeat Simple_repeat 3 34 0 7 1271 311 278 32 53 chr9 89929842 89929937 -34146235 + L1MB5 LINE L1 6041 6133 -41 7 1271 490 232 39 39 chr9 89929989 89930119 -34146053 - B1_Mur1 SINE Alu -18 131 2 7 1271 661 313 76 16 chr9 89930181 89930431 -34145741 + 7SLRNA srpRNA srpRNA 8 272 -42 7 1271 278 310 25 42 chr9 89931588 89931706 -34144466 - RLTR14 LTR ERV1 0 382 267 7 1271 225 330 52 31 chr9 89932247 89932344 -34143828 + MER96B DNA hAT 8 106 -311 7 1271 357 245 134 31 chr9 89932347 89932444 -34143728 - PB1D10 SINE Alu -10 107 1 7 1271 397 244 6 40 chr9 89932369 89932468 -34143704 - ID_B1 SINE B4 -67 157 66 8 1271 363 250 118 24 chr9 89932474 89932524 -34143648 - ID_B1 SINE B4 -10 214 157 8 1271 3345 45 155 2 chr9 89932524 89932968 -34143204 + RLTR1B LTR ERV1 1 512 0 8 1271 363 250 118 24 chr9 89932968 89933044 -34143128 - ID_B1 SINE B4 -68 156 77 8 1271 482 202 73 0 chr9 89933060 89933169 -34143003 - PB1D10 SINE Alu 0 117 1 8 1271 724 229 151 11 chr9 89933247 89933432 -34142740 - B3 SINE B2 -5 211 1 8 1271 312 214 192 10 chr9 89934042 89934146 -34142026 + PB1 SINE Alu 5 127 0 8 1271 770 187 37 0 chr9 89934260 89934394 -34141778 - B1_Mur4 SINE Alu -7 143 5 8 1271 328 287 35 0 chr9 89934534 89934621 -34141551 + PB1D10 SINE Alu 27 116 -1 8 1271 579 85 0 0 chr9 89934621 89934703 -34141469 + (GGAA)n Simple_repeat Simple_repeat 1 82 0 8 1271 709 189 79 0 chr9 89934754 89934881 -34141291 + B1_Mur2 SINE Alu 6 142 -7 8 1271 299 301 0 0 chr9 89934974 89935057 -34141115 + (TCCA)n Simple_repeat Simple_repeat 4 86 0 8 1271 884 289 16 20 chr9 89935265 89935516 -34140656 + Lx8 LINE L1 6390 6639 -834 8 1271 21 36 0 0 chr9 89935519 89935547 -34140625 + AT_rich Low_complexity Low_complexity 1 28 0 8 1271 511 196 0 43 chr9 89935603 89935720 -34140452 - Lx9 LINE L1 -167 7477 7366 8 1271 686 119 128 0 chr9 89935720 89935829 -34140343 + ORR1A3 LTR MaLR 1 123 -203 8 1271 327 189 0 0 chr9 89935829 89935882 -34140290 + Lx9 LINE L1 6392 6444 -1200 8 1271 470 289 49 49 chr9 89936535 89936699 -34139473 + RSINE1 SINE B4 2 165 0 8 1271 192 152 0 0 chr9 89937175 89937208 -34138964 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1271 824 287 45 77 chr9 89937208 89937495 -34138677 - B4 SINE B4 0 292 15 8 1271 181 224 183 56 chr9 89937532 89937603 -34138569 + MIRc SINE MIR 74 153 -115 8 1271 661 158 9 0 chr9 89937778 89937872 -34138300 - B1_Mus1 SINE Alu 0 148 54 8 1271 300 316 32 0 chr9 89937872 89937967 -34138205 - MLT1E2 LTR MaLR 0 654 557 8 1271 2121 109 16 3 chr9 89938044 89938356 -34137816 - IAPLTR2b LTR ERVK -11 316 1 8 1271 3803 192 11 20 chr9 89938356 89939062 -34137110 - IAPEY3-int LTR ERVK -20 6801 6102 8 1271 699 119 10 0 chr9 89939062 89939163 -34137009 - IAPEY3-int LTR ERVK -4393 3287 3186 8 1271 2043 74 0 4 chr9 89939155 89939413 -34136759 - IAPEY3-int LTR ERVK -2635 5045 4789 8 1271 1925 97 12 0 chr9 89939411 89939668 -34136504 - IAPEY3-int LTR ERVK -5183 2497 2238 8 1271 6833 201 24 46 chr9 89939645 89941263 -34134909 - IAPEY3-int LTR ERVK -5698 1982 1 8 1271 2143 121 3 9 chr9 89941275 89941593 -34134579 - IAPLTR2b LTR ERVK -11 316 1 8 1271 2755 58 70 6 chr9 89941593 89942064 -34134108 + L1_Mus2 LINE L1 5345 5913 -653 8 1271 3448 62 29 2 chr9 89942064 89942517 -34133655 + L1_Mus2 LINE L1 6102 6566 0 8 1271 1148 70 0 14 chr9 89942532 89942678 -34133494 + B1_Mm SINE Alu 4 147 0 8 1271 313 173 0 47 chr9 89942678 89942763 -34133409 + A-rich Low_complexity Low_complexity 3 83 0 8 1271 392 325 84 11 chr9 89942765 89942955 -34133217 - MLT1E2 LTR MaLR -136 491 288 8 1271 428 308 101 20 chr9 89943026 89943175 -34132997 - ID_B1 SINE B4 0 224 64 8 1271 666 162 71 29 chr9 89943189 89943329 -34132843 - B1_Mus2 SINE Alu 0 147 2 8 1271 270 279 0 14 chr9 89943337 89943406 -34132766 - ID4 SINE ID -13 70 3 8 1271 2002 118 123 12 chr9 89943511 89943845 -34132327 + RLTR14 LTR ERV1 12 382 0 8 1271 259 312 72 18 chr9 89943850 89943961 -34132211 - MLT1E2 LTR MaLR -420 204 88 8 1271 559 236 26 0 chr9 89944095 89944270 -34131902 + Lx6 LINE L1 6590 6752 -708 8 1271 267 54 0 0 chr9 89944270 89944307 -34131865 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 8 1271 631 125 53 12 chr9 89944323 89944493 -34131679 + GA-rich Low_complexity Low_complexity 4 180 0 8 1271 237 125 54 0 chr9 89944500 89944556 -34131616 + A-rich Low_complexity Low_complexity 2 60 0 8 1271 1970 284 42 34 chr9 89944557 89945173 -34130999 + Lx5 LINE L1 6430 7050 0 8 1271 204 30 59 29 chr9 89945313 89945347 -34130825 - MIRm SINE MIR -118 158 124 8 1271 198 207 50 33 chr9 89945318 89945378 -34130794 - MIRc SINE MIR -120 148 88 8 1271 460 289 131 45 chr9 89945744 89946012 -34130160 + B4A SINE B4 1 291 -1 8 1271 438 303 6 32 chr9 89946136 89946293 -34129879 - Tigger5 DNA MER2_type -50 2356 2204 8 1271 1305 114 7 160 chr9 89946452 89946556 -34129616 - RLTR1D LTR ERV1 -16 589 491 8 1271 1710 120 17 87 chr9 89946556 89946902 -34129270 - RLTRETN_Mm LTR ERVK 0 322 1 8 1271 1305 114 7 160 chr9 89946902 89946970 -34129202 - RLTR1D LTR ERV1 -115 490 428 8 1271 1140 51 0 0 chr9 89946970 89947108 -34129064 + B1_Mus2 SINE Alu 2 139 -8 8 1271 1305 111 1 31 chr9 89947108 89947248 -34128924 - RLTR1D LTR ERV1 -178 427 222 8 1271 1064 43 0 0 chr9 89947274 89947412 -34128760 + B1_Mm SINE Alu 10 147 0 8 1271 1441 124 184 4 chr9 89947420 89947716 -34128456 - RLTR1D LTR ERV1 -249 356 1 8 1271 3488 20 5 5 chr9 89947725 89948121 -34128051 - MTA_Mm LTR MaLR 0 396 1 8 1271 806 181 25 6 chr9 89948477 89948638 -34127534 - URR1B DNA MER1_type -45 180 17 8 1271 232 273 15 15 chr9 89948760 89948827 -34127345 + 4.5SRNA scRNA scRNA 20 86 -8 8 1271 271 216 0 0 chr9 89948779 89948830 -34127342 + PB1D10 SINE Alu 41 91 -26 8 1271 219 189 19 19 chr9 89948837 89948851 -34127321 + polypurine Low_complexity Low_complexity 2 15 0 8 1271 933 63 158 0 chr9 89948851 89948978 -34127194 + B1_Mm SINE Alu 1 147 0 8 1271 219 189 19 19 chr9 89948978 89949017 -34127155 + polypurine Low_complexity Low_complexity 16 54 0 8 1271 245 297 103 42 chr9 89949875 89950040 -34126132 - MER58B DNA MER1_type -6 335 161 8 1271 21 36 0 0 chr9 89950173 89950201 -34125971 + AT_rich Low_complexity Low_complexity 1 28 0 8 1271 670 93 19 0 chr9 89950520 89950628 -34125544 + (TC)n Simple_repeat Simple_repeat 1 110 0 8 1271 256 246 14 14 chr9 89950772 89950842 -34125330 - Lx8 LINE L1 -248 7225 7156 8 1271 257 265 60 0 chr9 89950865 89950876 -34125296 - B1F SINE Alu -49 100 13 8 1271 374 222 28 0 chr9 89950876 89950948 -34125224 - ID_B1 SINE B4 -57 167 94 8 1271 548 339 51 21 chr9 89950972 89951207 -34124965 + B4A SINE B4 6 247 -45 8 1271 333 0 0 0 chr9 89951254 89951291 -34124881 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1271 189 0 0 0 chr9 89951435 89951456 -34124716 + (CCA)n Simple_repeat Simple_repeat 2 22 0 8 1271 420 263 11 0 chr9 89951850 89951945 -34124227 + PB1D10 SINE Alu 19 114 -3 8 1271 5165 51 2 6 chr9 89952238 89952873 -34123299 - L1Md_F2 LINE L1 0 6582 5951 8 1271 258 274 18 45 chr9 89952911 89952923 -34123249 - PB1D10 SINE Alu -8 109 3 8 1271 258 247 20 51 chr9 89952923 89953021 -34123151 - ID_B1 SINE B4 -46 178 84 8 1271 487 322 70 18 chr9 89953095 89953367 -34122805 - B4A SINE B4 -4 288 3 8 1271 425 340 93 20 chr9 89953403 89953553 -34122619 + RSINE1 SINE B4 5 165 0 8 1271 26 0 0 0 chr9 89953556 89953582 -34122590 + AT_rich Low_complexity Low_complexity 1 26 0 8 1271 1067 44 125 6 chr9 89953592 89953752 -34122420 + B2_Mm2 SINE B2 7 185 -10 8 1271 293 239 127 9 chr9 89953867 89953977 -34122195 + MER58A DNA MER1_type 45 167 -57 8 1271 224 250 0 0 chr9 89953988 89954036 -34122136 + B1F1 SINE Alu 3 50 -99 8 1271 207 0 0 0 chr9 89954207 89954230 -34121942 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1271 803 241 41 5 chr9 89954231 89954427 -34121745 - RMER15 LTR ERVL -44 531 329 8 1271 537 58 0 0 chr9 89954544 89954613 -34121559 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1271 1188 212 26 15 chr9 89954659 89954932 -34121240 + B4A SINE B4 16 291 -1 8 1271 610 204 9 0 chr9 89955074 89955182 -34120990 + PB1D9 SINE Alu 1 109 -11 8 1271 198 103 0 0 chr9 89955183 89955212 -34120960 + (TAA)n Simple_repeat Simple_repeat 2 30 0 8 1271 1156 61 0 13 chr9 89955758 89955908 -34120264 - B1_Mus1 SINE Alu 0 148 1 8 1271 696 256 39 29 chr9 89956063 89956268 -34119904 + ID_B1 SINE B4 2 208 -16 8 1271 1244 48 0 0 chr9 89957261 89957408 -34118764 - B1_Mm SINE Alu 0 147 1 8 1271 227 133 22 0 chr9 89957827 89957872 -34118300 - MER53 DNA hAT -9 184 139 8 1271 535 264 52 0 chr9 89957873 89958028 -34118144 - Lx5 LINE L1 -8 7042 6880 8 1271 344 277 78 19 chr9 89958028 89958131 -34118041 - ID_B1 SINE B4 -38 186 78 8 1271 200 274 20 0 chr9 89958145 89958196 -34117976 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1271 181 196 36 0 chr9 89958211 89958267 -34117905 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1271 296 256 218 53 chr9 89958333 89958398 -34117774 - B4A SINE B4 -8 284 212 8 1271 813 204 44 84 chr9 89958398 89958623 -34117549 - B3 SINE B2 0 216 1 8 1271 574 204 113 8 chr9 89958630 89958763 -34117409 - B1_Mur1 SINE Alu -2 147 1 8 1271 296 256 218 53 chr9 89958763 89958932 -34117240 - B4A SINE B4 -86 206 2 8 1271 280 28 0 0 chr9 89960648 89960684 -34115488 + U2 snRNA snRNA 1 36 -152 8 1271 3539 101 54 20 chr9 89962653 89963191 -34112981 - Lx3_Mus LINE L1 -1 7008 6453 8 1271 1156 121 87 59 chr9 89963581 89963800 -34112372 - URR1A DNA MER1_type -1 225 1 8 1271 475 202 34 42 chr9 89964081 89964200 -34111972 - RMER15 LTR ERVL -36 539 422 8 1271 264 296 122 14 chr9 89964797 89964944 -34111228 - MIR SINE MIR -86 176 14 8 1271 259 264 0 77 chr9 89965947 89966025 -34110147 + tRNA-Ala-GCY_ tRNA tRNA 2 73 -2 8 1271 670 206 51 14 chr9 89966112 89966250 -34109922 - B1_Mm SINE Alu 0 147 5 8 1271 551 200 24 172 chr9 89966285 89966454 -34109718 + ID_B1 SINE B4 81 224 0 8 1271 816 226 24 5 chr9 89967082 89967291 -34108881 + ID_B1 SINE B4 1 213 -11 8 1271 603 62 0 0 chr9 89968062 89968142 -34108030 + (TA)n Simple_repeat Simple_repeat 2 81 0 8 1271 946 269 27 37 chr9 89968222 89968516 -34107656 - B4A SINE B4 0 292 2 8 1271 1267 62 0 17 chr9 89968965 89969145 -34107027 + (TTTCC)n Simple_repeat Simple_repeat 3 179 0 8 1271 600 176 0 42 chr9 89969145 89969255 -34106917 - PB1D9 SINE Alu -9 111 5 8 1271 336 185 3 11 chr9 89971490 89971569 -34104603 + PB1D10 SINE Alu 50 125 -2 9 1271 364 300 49 28 chr9 89971577 89971721 -34104451 + B4 SINE B4 1 147 -145 9 1271 538 187 35 153 chr9 89971794 89971996 -34104176 + B3 SINE B2 32 209 -7 9 1271 185 154 0 25 chr9 89972088 89972128 -34104044 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 9 1271 216 328 0 72 chr9 89972133 89972202 -34103970 + ID4_ SINE ID 11 74 -9 9 1271 393 22 0 0 chr9 89972203 89972249 -34103923 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1271 248 245 0 0 chr9 89972447 89972500 -34103672 + ID4_ SINE ID 30 82 -1 9 1271 27 0 0 0 chr9 89972539 89972566 -34103606 + AT_rich Low_complexity Low_complexity 1 27 0 9 1271 22 0 0 0 chr9 89972637 89972659 -34103513 + AT_rich Low_complexity Low_complexity 1 22 0 9 1271 567 211 171 0 chr9 89972664 89972787 -34103385 + B1_Mur1 SINE Alu 4 147 -2 9 1271 608 183 2 13 chr9 89973016 89973138 -34103034 + B3 SINE B2 1 119 -74 9 1271 30 27 0 0 chr9 89973177 89973214 -34102958 + AT_rich Low_complexity Low_complexity 1 37 0 9 1271 387 297 38 30 chr9 89973215 89973347 -34102825 - RSINE1 SINE B4 -28 137 5 9 1271 483 211 0 60 chr9 89973517 89973633 -34102539 - PB1D9 SINE Alu 0 120 12 9 1271 325 231 186 62 chr9 89973633 89973646 -34102526 - ID_B1 SINE B4 0 224 80 9 1271 282 263 158 17 chr9 89973752 89973872 -34102300 - L1MC3 LINE L1 -18 7767 7631 9 1271 549 0 0 0 chr9 89974011 89974072 -34102100 + (GA)n Simple_repeat Simple_repeat 2 62 0 9 1271 227 294 103 69 chr9 89974102 89974162 -34102010 + L1M4 LINE L1 4067 4123 -2023 9 1271 2033 118 20 58 chr9 89974162 89974504 -34101668 + ORR1A4 LTR MaLR 1 329 0 9 1271 227 294 103 69 chr9 89974504 89974618 -34101554 + L1M4 LINE L1 4124 4247 -1899 9 1271 21 0 0 0 chr9 89974799 89974820 -34101352 + AT_rich Low_complexity Low_complexity 1 21 0 9 1271 481 288 57 7 chr9 89974838 89974978 -34101194 - RSINE1 SINE B4 -16 149 3 9 1271 777 270 0 12 chr9 89975026 89975191 -34100981 - RSINE1 SINE B4 -1 164 2 9 1271 306 0 0 0 chr9 89975291 89975325 -34100847 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1271 832 257 29 0 chr9 89975533 89975739 -34100433 + B3 SINE B2 2 213 -3 9 1271 261 138 354 0 chr9 89975753 89975818 -34100354 + Lx8 LINE L1 6720 6807 -666 9 1271 552 209 55 0 chr9 89975819 89975929 -34100243 + B3 SINE B2 1 116 -100 9 1271 407 186 274 0 chr9 89975997 89976121 -34100051 + Lx8 LINE L1 6793 6950 -523 9 1271 814 182 55 0 chr9 89976224 89976389 -34099783 + RLTR25A LTR ERVK 1 174 -929 9 1271 971 188 133 106 chr9 89976376 89976630 -34099542 - RLTR25B LTR ERVK -484 544 264 9 1271 1638 32 11 0 chr9 89976630 89976820 -34099352 - B2_Mm1t SINE B2 0 193 2 9 1271 1101 75 0 7 chr9 89976823 89976970 -34099202 - B1_Mus2 SINE Alu -1 146 1 9 1271 971 188 133 106 chr9 89976970 89977087 -34099085 - RLTR25B LTR ERVK -765 263 159 9 1271 291 263 63 38 chr9 89977082 89977161 -34099011 + MT2B LTR ERVL 192 272 -329 9 1271 1101 175 101 25 chr9 89977095 89977371 -34098801 + RLTR25A LTR ERVK 521 817 -286 9 1271 1191 61 0 7 chr9 89977372 89977520 -34098652 + B1_Mus1 SINE Alu 2 148 0 9 1271 201 94 0 0 chr9 89977521 89977553 -34098619 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 9 1271 281 224 224 0 chr9 89977553 89977660 -34098512 + RLTR25B LTR ERVK 725 855 -173 9 1271 646 233 164 43 chr9 89977744 89978000 -34098172 + RLTR25B LTR ERVK 742 1028 0 9 1271 312 200 23 54 chr9 89978001 89978099 -34098073 - PB1D10 SINE Alu -40 109 12 9 1271 356 252 56 78 chr9 89978087 89978116 -34098056 + ID SINE ID 58 83 -141 9 1271 590 174 73 24 chr9 89978116 89978240 -34097932 + B1_Mur4 SINE Alu 2 131 -19 9 1271 225 0 0 0 chr9 89978242 89978267 -34097905 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1271 1079 44 66 0 chr9 89978267 89978404 -34097768 - B1_Mus2 SINE Alu 0 147 2 9 1271 207 0 0 0 chr9 89978415 89978438 -34097734 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1271 1494 34 23 0 chr9 89978438 89978614 -34097558 - B2_Mm1a SINE B2 -13 180 1 9 1271 323 204 146 64 chr9 89978672 89978782 -34097390 + PB1D9 SINE Alu 2 120 0 9 1271 319 317 0 19 chr9 89978872 89978975 -34097197 + ID_B1 SINE B4 96 196 -28 9 1271 279 0 0 0 chr9 89979314 89979345 -34096827 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1271 216 67 0 0 chr9 89979345 89979375 -34096797 + (GA)n Simple_repeat Simple_repeat 2 31 0 9 1271 1199 22 0 0 chr9 89979413 89979550 -34096622 - B1_Mus2 SINE Alu -9 138 2 9 1271 1019 114 19 0 chr9 89979978 89980136 -34096036 - B2_Mm2 SINE B2 -31 164 4 9 1271 380 240 96 0 chr9 89980286 89980411 -34095761 + ID_B1 SINE B4 87 223 -1 9 1271 718 255 62 0 chr9 89980419 89980611 -34095561 + B3 SINE B2 1 204 -12 9 1271 5474 19 0 0 chr9 89980744 89981366 -34094806 - L1_Mm LINE L1 -476 5407 4786 9 1271 1792 21 0 0 chr9 89981363 89981567 -34094605 + L1_Mm LINE L1 5385 5589 -297 9 1271 8188 54 0 0 chr9 89981567 89982563 -34093609 + L1Md_T LINE L1 5587 6582 0 9 1271 1471 122 21 17 chr9 89982563 89982599 -34093573 + L1_Mm LINE L1 5590 5626 -260 9 1271 1161 140 235 24 chr9 89982903 89983239 -34092933 + RMER17C LTR ERVK 1 407 -3 9 1271 234 380 13 0 chr9 89984794 89984873 -34091299 - ORR1E LTR MaLR -279 80 1 9 1271 352 210 196 105 chr9 89985307 89985440 -34090732 + B1_Mur4 SINE Alu 5 149 -1 9 1271 357 258 20 49 chr9 89985677 89985779 -34090393 + RSINE1 SINE B4 44 142 -23 9 1271 1181 55 14 0 chr9 89987857 89988002 -34088170 + B1_Mus1 SINE Alu 2 148 0 9 1271 225 0 0 0 chr9 89988789 89988814 -34087358 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1271 207 0 0 0 chr9 89989501 89989524 -34086648 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1271 1099 69 14 0 chr9 89989524 89989668 -34086504 - B1_Mus2 SINE Alu 0 147 2 9 1271 625 130 130 0 chr9 89989721 89989829 -34086343 - B1_Mus2 SINE Alu -9 138 17 9 1271 204 40 0 0 chr9 89989830 89989855 -34086317 + (CAG)n Simple_repeat Simple_repeat 1 25 0 9 1271 1151 48 7 14 chr9 89990960 89991107 -34085065 + B1_Mus2 SINE Alu 2 147 0 9 1271 1301 80 34 0 chr9 89991134 89991310 -34084862 + B2_Mm1t SINE B2 2 183 -10 9 1271 261 0 0 0 chr9 89991571 89991600 -34084572 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1271 506 127 223 18 chr9 89991762 89991874 -34084298 - B1_Mus1 SINE Alu -11 137 3 9 1271 596 214 95 0 chr9 89991947 89992073 -34084099 - B1_Mur2 SINE Alu -11 138 1 9 1271 381 172 46 139 chr9 89992877 89992938 -34083234 - B1_Mur2 SINE Alu -6 143 93 9 1271 1244 104 5 32 chr9 89992938 89993127 -34083045 + B2_Mm2 SINE B2 1 184 -11 9 1271 381 172 46 139 chr9 89993127 89993173 -34082999 - B1_Mur2 SINE Alu -57 92 46 9 1271 414 225 67 0 chr9 89993257 89993346 -34082826 + B1_Mm SINE Alu 2 96 -51 9 1271 1196 48 14 0 chr9 89993670 89993815 -34082357 + B1_Mus1 SINE Alu 2 148 0 9 1271 949 132 35 24 chr9 89993831 89994001 -34082171 + B2_Mm2 SINE B2 2 173 -22 9 1271 280 118 0 38 chr9 89994047 89994100 -34082072 + B2_Mm2 SINE B2 47 97 -98 9 1271 971 109 0 42 chr9 89994140 89994284 -34081888 + B1_Mus1 SINE Alu 1 138 -10 9 1271 201 39 0 0 chr9 89994284 89994310 -34081862 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 9 1271 332 229 0 0 chr9 89994328 89994389 -34081783 + B3 SINE B2 1 61 -155 9 1271 473 214 29 10 chr9 89994401 89994505 -34081667 + Lx8 LINE L1 6972 7077 -396 9 1271 610 285 89 0 chr9 89994517 89994675 -34081497 + Lx8 LINE L1 7129 7300 -173 9 1271 21 71 0 0 chr9 89995189 89995231 -34080941 + AT_rich Low_complexity Low_complexity 1 42 0 9 1271 621 224 15 7 chr9 89995463 89995598 -34080574 + B1_Mur1 SINE Alu 1 136 -13 9 1271 426 228 22 17 chr9 89995705 89995836 -34080336 + B2_Mm2 SINE B2 22 161 -55 9 1271 750 245 72 15 chr9 89995856 89996051 -34080121 + B3 SINE B2 8 213 -3 9 1271 638 72 321 9 chr9 89996198 89996310 -34079862 + B1_Mus1 SINE Alu 2 148 0 9 1271 944 63 95 0 chr9 89996797 89996923 -34079249 - B1_Mus2 SINE Alu -9 138 1 9 1271 553 258 46 15 chr9 89997370 89997500 -34078672 - RSINE1 SINE B4 -29 136 3 9 1271 1447 71 16 5 chr9 89997914 89998099 -34078073 + B2_Mm2 SINE B2 1 187 -8 9 1271 559 266 31 8 chr9 89998864 89998993 -34077179 + B1_Mur1 SINE Alu 6 137 -12 9 1271 1051 86 14 0 chr9 89999214 89999354 -34076818 + B1_Mus1 SINE Alu 2 143 -5 9 1271 189 0 0 0 chr9 89999498 89999519 -34076653 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1271 375 41 0 0 chr9 89999649 89999698 -34076474 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1271 243 265 103 0 chr9 89999749 89999817 -34076355 + B1F2 SINE Alu 1 75 -74 9 1271 1022 84 7 14 chr9 90000120 90000265 -34075907 + B1_Mus1 SINE Alu 2 145 -3 1 1271 651 178 16 33 chr9 90000765 90000887 -34075285 - PB1D9 SINE Alu 0 120 1 2 1271 203 32 0 61 chr9 90000892 90000925 -34075247 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 3 1271 946 60 96 7 chr9 90000927 90001062 -34075110 - B1_Mus1 SINE Alu 0 148 2 4 1271 651 219 71 33 chr9 90002151 90002363 -34073809 - RCHARR1 DNA MER1_type -136 838 619 5 1271 875 56 167 0 chr9 90002562 90002688 -34073484 - B1_Mus2 SINE Alu 0 147 1 6 1271 215 268 126 11 chr9 90003260 90003347 -34072825 - PB1 SINE Alu -18 109 13 7 1271 415 167 88 53 chr9 90003508 90003622 -34072550 + B1_Mur2 SINE Alu 25 142 -7 8 1271 226 146 24 0 chr9 90003713 90003754 -34072418 + PB1D10 SINE Alu 75 116 -1 9 1271 248 240 39 26 chr9 90003929 90004006 -34072166 + ID4 SINE ID 2 79 -4 1 1271 21 0 0 0 chr9 90004007 90004028 -34072144 + AT_rich Low_complexity Low_complexity 1 21 0 1 1271 726 158 57 7 chr9 90004072 90004212 -34071960 - B1_Mus1 SINE Alu 0 148 2 1 1271 236 310 42 0 chr9 90004563 90004634 -34071538 + RSINE1 SINE B4 86 159 -6 1 1271 1125 75 7 0 chr9 90005206 90005352 -34070820 - B1_Mus1 SINE Alu -1 147 1 1 1271 396 0 0 0 chr9 90005473 90005517 -34070655 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 1271 1019 114 0 19 chr9 90005518 90005679 -34070493 - B2_Mm2 SINE B2 -37 158 1 1 1271 1197 35 7 14 chr9 90006170 90006317 -34069855 + B1_Mus2 SINE Alu 2 147 0 1 1271 33 25 0 0 chr9 90006325 90006365 -34069807 + AT_rich Low_complexity Low_complexity 1 40 0 1 1271 449 200 165 0 chr9 90006367 90006482 -34069690 + B1_Mur2 SINE Alu 2 135 -14 1 1271 297 0 0 0 chr9 90007368 90007401 -34068771 + (CCA)n Simple_repeat Simple_repeat 3 35 0 2 1271 257 307 0 22 chr9 90007449 90007539 -34068633 + B3A SINE B2 107 194 -4 2 1271 276 277 68 43 chr9 90007830 90007947 -34068225 - B4A SINE B4 -43 249 130 2 1271 454 200 0 0 chr9 90008012 90008097 -34068075 - B1_Mm SINE Alu -17 130 46 2 1271 21 0 0 0 chr9 90008945 90008966 -34067206 + GC_rich Low_complexity Low_complexity 1 21 0 2 1271 342 219 26 95 chr9 90010543 90010659 -34065513 - B1_Mur1 SINE Alu 0 149 42 2 1271 882 178 7 0 chr9 90010687 90010833 -34065339 - B1_Mus2 SINE Alu 0 147 1 2 1271 279 208 45 22 chr9 90010845 90010956 -34065216 - L1M3 LINE L1 -581 5581 5469 2 1271 1133 56 42 0 chr9 90011031 90011173 -34064999 + B1_Mus1 SINE Alu 1 148 0 2 1271 22 35 0 0 chr9 90011478 90011507 -34064665 + AT_rich Low_complexity Low_complexity 1 29 0 2 1271 490 263 26 0 chr9 90011524 90011638 -34064534 - RSINE1 SINE B4 -38 127 11 3 1271 1357 105 0 16 chr9 90011679 90011872 -34064300 + B2_Mm2 SINE B2 2 191 -4 3 1271 341 183 215 0 chr9 90011883 90011976 -34064196 + B3 SINE B2 2 114 -102 3 1271 298 299 118 15 chr9 90012021 90012157 -34064015 - RSINE1 SINE B4 -4 161 12 3 1271 1072 208 19 0 chr9 90012257 90012469 -34063703 + B3 SINE B2 1 216 0 3 1271 373 265 31 0 chr9 90012481 90012579 -34063593 + RSINE1 SINE B4 3 103 -62 3 1271 444 37 0 0 chr9 90012584 90012638 -34063534 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1271 234 23 0 65 chr9 90012760 90012806 -34063366 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 3 1271 309 190 0 81 chr9 90012820 90012906 -34063266 - RMER10B LTR ERVL -89 309 231 3 1271 207 100 0 0 chr9 90012914 90012944 -34063228 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 3 1271 1223 55 0 0 chr9 90012946 90013092 -34063080 - B1_Mm SINE Alu 0 147 2 4 1271 263 250 85 128 chr9 90013101 90013179 -34062993 + Charlie4a DNA MER1_type 195 268 -240 4 1271 612 278 57 36 chr9 90013179 90013373 -34062799 + B3A SINE B2 1 198 0 4 1271 263 250 85 128 chr9 90013373 90013482 -34062690 + Charlie4a DNA MER1_type 269 374 -134 4 1271 1454 86 16 0 chr9 90013498 90013685 -34062487 - B2_Mm2 SINE B2 -4 191 2 4 1271 384 40 0 0 chr9 90016080 90016130 -34060042 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1271 398 258 104 75 chr9 90016971 90017105 -34059067 - ID_B1 SINE B4 -4 220 83 4 1271 551 246 0 17 chr9 90017411 90017527 -34058645 + RSINE1 SINE B4 3 116 -49 4 1271 268 232 0 20 chr9 90017548 90017649 -34058523 + C-rich Low_complexity Low_complexity 5 103 0 4 1271 1171 206 157 33 chr9 90017759 90017789 -34058383 + ORR1D1 LTR MaLR 1 30 -344 4 1271 1038 58 0 48 chr9 90017789 90017934 -34058238 + B1_Mus2 SINE Alu 1 138 -9 4 1271 1171 206 157 33 chr9 90017934 90018235 -34057937 + ORR1D1 LTR MaLR 31 373 -1 4 1271 195 42 0 0 chr9 90018755 90018779 -34057393 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1271 886 294 127 26 chr9 90019593 90019980 -34056192 - MLT1C LTR MaLR 0 467 42 5 1271 210 105 0 0 chr9 90020231 90020269 -34055903 + (C)n Simple_repeat Simple_repeat 1 38 0 5 1271 736 151 41 48 chr9 90020442 90020588 -34055584 + B1_Mur4 SINE Alu 6 150 0 5 1271 314 123 0 47 chr9 90020717 90020802 -34055370 + A-rich Low_complexity Low_complexity 1 81 0 5 1271 610 27 0 0 chr9 90021346 90021419 -34054753 - tRNA-Lys-AAG tRNA tRNA -3 73 1 5 1271 183 220 0 0 chr9 90021516 90021566 -34054606 + T-rich Low_complexity Low_complexity 1 50 0 5 1271 211 260 28 94 chr9 90021813 90021919 -34054253 + RSINE1 SINE B4 4 102 -63 5 1271 400 250 62 0 chr9 90022497 90022609 -34053563 - PB1D9 SINE Alu 0 120 2 5 1271 871 95 66 0 chr9 90022909 90023046 -34053126 + B1_Mus2 SINE Alu 1 146 -1 5 1271 256 60 19 39 chr9 90023059 90023111 -34053061 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 6 1271 1127 65 22 0 chr9 90023317 90023456 -34052716 - B1_Mus2 SINE Alu -1 146 5 6 1271 2253 177 104 36 chr9 90023462 90024289 -34051883 - RMER19B LTR ERVK -19 883 1 6 1271 530 271 0 21 chr9 90024289 90024427 -34051745 - ID_B1 SINE B4 -76 148 14 6 1271 398 108 0 15 chr9 90024535 90024601 -34051571 + (TCC)n Simple_repeat Simple_repeat 3 67 0 6 1271 814 200 70 0 chr9 90025241 90025426 -34050746 - B3 SINE B2 -8 208 11 6 1271 37 23 0 0 chr9 90025628 90025672 -34050500 + AT_rich Low_complexity Low_complexity 1 44 0 6 1271 954 137 0 7 chr9 90025676 90025816 -34050356 - B1_Mus2 SINE Alu -8 139 1 6 1271 1260 80 11 0 chr9 90025857 90026036 -34050136 - B2_Mm2 SINE B2 0 195 15 6 1271 1097 108 0 6 chr9 90026036 90026213 -34049959 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 6 1271 449 144 0 11 chr9 90026220 90026311 -34049861 + CT-rich Low_complexity Low_complexity 2 91 0 7 1271 972 124 6 11 chr9 90026314 90026494 -34049678 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 7 1271 976 103 0 70 chr9 90026501 90026657 -34049515 - B1_Mus1 SINE Alu -2 146 2 7 1271 302 321 115 9 chr9 90026792 90026905 -34049267 - PB1 SINE Alu -2 125 1 7 1271 459 0 0 0 chr9 90026926 90026977 -34049195 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 7 1271 847 169 7 20 chr9 90026982 90027133 -34049039 - B1_Mur4 SINE Alu -1 149 1 7 1271 1343 194 139 21 chr9 90027156 90027487 -34048685 + ORR1D1 LTR MaLR 1 370 -4 7 1271 589 264 0 8 chr9 90027549 90027679 -34048493 - RSINE1 SINE B4 -34 131 3 7 1271 836 200 19 104 chr9 90027714 90027926 -34048246 - B3A SINE B2 -4 194 1 7 1271 907 131 0 7 chr9 90027951 90028089 -34048083 + B1_Mur4 SINE Alu 1 137 -13 7 1271 180 0 0 0 chr9 90028092 90028112 -34048060 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1271 180 329 26 0 chr9 90029047 90029123 -34047049 - MIRc SINE MIR -134 134 57 8 1271 291 309 0 24 chr9 90029428 90029511 -34046661 + ID2 SINE ID 3 83 0 8 1271 905 99 72 7 chr9 90029602 90029755 -34046417 + B2_Mm1t SINE B2 1 163 -30 8 1271 896 57 0 0 chr9 90029751 90029873 -34046299 + B1_Mm SINE Alu 26 147 0 8 1271 268 204 20 0 chr9 90029978 90030027 -34046145 + MTE2a LTR MaLR 228 277 -102 8 1271 1226 48 0 0 chr9 90030126 90030273 -34045899 + B1_Mm SINE Alu 1 147 0 8 1271 277 22 21 43 chr9 90030548 90030595 -34045577 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 8 1271 241 327 105 35 chr9 90030733 90030904 -34045268 - MIRb SINE MIR -15 253 71 8 1271 351 276 10 20 chr9 90031349 90031449 -34044723 + MER81 DNA AcHobo 15 113 -1 8 1271 468 0 0 0 chr9 90031716 90031768 -34044404 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1271 222 150 0 0 chr9 90032216 90032256 -34043916 + (TTTTC)n Simple_repeat Simple_repeat 1 40 0 9 1271 1300 77 54 16 chr9 90032256 90032442 -34043730 - B2_Mm2 SINE B2 0 195 3 9 1271 559 236 270 0 chr9 90032506 90032680 -34043492 - ID_B1 SINE B4 -3 221 1 9 1271 1263 104 0 4 chr9 90032705 90032956 -34043216 + (TTC)n Simple_repeat Simple_repeat 1 250 0 9 1271 1202 62 0 0 chr9 90032956 90033102 -34043070 - B1_Mus1 SINE Alu -1 147 2 9 1271 1454 73 5 20 chr9 90033560 90033756 -34042416 - B2_Mm1a SINE B2 0 193 1 9 1271 357 125 0 0 chr9 90033788 90033844 -34042328 + (TC)n Simple_repeat Simple_repeat 1 56 0 9 1271 957 47 0 0 chr9 90033844 90033972 -34042200 - B1_Mus1 SINE Alu -1 147 20 9 1271 380 196 0 110 chr9 90033878 90033987 -34042185 - MT2B LTR ERVL -337 264 168 9 1271 983 92 0 0 chr9 90034232 90034373 -34041799 - B1_Mus1 SINE Alu 0 148 8 1 1271 1255 151 0 27 chr9 90034777 90035002 -34041170 - URR1B DNA MER1_type -6 219 1 1 1271 1204 41 7 0 chr9 90035478 90035624 -34040548 + B1_Mus2 SINE Alu 1 147 0 1 1271 269 98 0 73 chr9 90035624 90035679 -34040493 + A-rich Low_complexity Low_complexity 1 51 0 1 1271 369 62 0 0 chr9 90035879 90035927 -34040245 + (CAGC)n Simple_repeat Simple_repeat 3 50 0 1 1271 472 195 0 12 chr9 90038164 90038247 -34037925 - ID4_ SINE ID 0 83 2 1 1271 1035 274 98 32 chr9 90038446 90038823 -34037349 + MTD LTR MaLR 5 406 -13 1 1271 1409 238 261 47 chr9 90038833 90039724 -34036448 + MTD-int LTR MaLR 1 1082 -176 1 1271 680 230 4 129 chr9 90039716 90039902 -34036270 - B3A SINE B2 0 198 36 1 1271 1484 62 0 0 chr9 90039902 90040095 -34036077 - L1_Mus2 LINE L1 0 6566 6374 1 1271 680 230 4 129 chr9 90040095 90040133 -34036039 - B3A SINE B2 -163 35 2 1 1271 336 242 76 23 chr9 90040134 90040265 -34035907 + MTD-int LTR MaLR 1087 1224 -34 1 1271 288 0 0 0 chr9 90040265 90040297 -34035875 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1271 1081 224 121 54 chr9 90040325 90040734 -34035438 + MTD LTR MaLR 6 421 0 1 1271 581 49 0 12 chr9 90041222 90041297 -34034875 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1271 1412 28 0 11 chr9 90041297 90041479 -34034693 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1271 581 49 0 12 chr9 90041479 90041485 -34034687 + (GA)n Simple_repeat Simple_repeat 1 6 0 1 1271 1321 77 0 47 chr9 90042250 90042440 -34033732 + B2_Mm2 SINE B2 1 181 -14 1 1271 1166 75 0 0 chr9 90042440 90042586 -34033586 + B1_Mus2 SINE Alu 2 147 0 1 1271 261 0 0 0 chr9 90042586 90042615 -34033557 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1271 1415 81 5 0 chr9 90042619 90042805 -34033367 + B2_Mm1a SINE B2 1 187 -6 1 1271 288 0 0 0 chr9 90042921 90042953 -34033219 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1271 553 258 132 0 chr9 90042966 90043133 -34033039 + B3A SINE B2 7 195 -3 1 1271 478 303 63 38 chr9 90043214 90043372 -34032800 - B4A SINE B4 -129 163 2 1 1271 360 0 0 0 chr9 90043378 90043418 -34032754 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1271 209 180 0 20 chr9 90043425 90043476 -34032696 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1271 356 302 156 14 chr9 90043494 90043635 -34032537 - B4 SINE B4 0 292 132 1 1271 1321 77 0 47 chr9 90043669 90043859 -34032313 + B2_Mm2 SINE B2 1 181 -14 1 1271 1166 75 0 0 chr9 90043859 90044005 -34032167 + B1_Mus2 SINE Alu 2 147 0 1 1271 1415 81 5 0 chr9 90044015 90044201 -34031971 + B2_Mm1a SINE B2 1 187 -6 1 1271 270 0 0 0 chr9 90044317 90044347 -34031825 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1271 553 258 132 0 chr9 90044360 90044527 -34031645 + B3A SINE B2 7 195 -3 1 1271 478 303 63 38 chr9 90044608 90044766 -34031406 - B4A SINE B4 -129 163 2 1 1271 360 0 0 0 chr9 90044772 90044812 -34031360 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1271 209 180 0 20 chr9 90044819 90044870 -34031302 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1271 417 289 146 13 chr9 90044888 90045039 -34031133 - B4 SINE B4 0 292 122 1 1271 229 351 0 13 chr9 90045054 90045129 -34031043 - ID2 SINE ID -9 74 1 1 1271 421 160 0 29 chr9 90045282 90045385 -34030787 + GA-rich Low_complexity Low_complexity 1 100 0 1 1271 1094 115 0 6 chr9 90045387 90045562 -34030610 + (GAA)n Simple_repeat Simple_repeat 2 175 0 1 1271 602 224 0 135 chr9 90046081 90046173 -34029999 + B1_Mur3 SINE Alu 1 71 -78 1 1271 189 74 0 0 chr9 90046173 90046200 -34029972 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1271 1129 76 0 0 chr9 90046200 90046345 -34029827 - B1_Mus1 SINE Alu -2 146 2 1 1271 602 224 0 135 chr9 90046345 90046421 -34029751 + B1_Mur3 SINE Alu 72 146 -3 1 158 429 127 0 0 chr9 90046444 90046523 -34029649 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1272 960 218 39 5 chr9 90046656 90046863 -34029309 - B3 SINE B2 -2 214 1 1 1272 363 23 0 0 chr9 90046872 90046916 -34029256 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 1272 1132 79 0 0 chr9 90046916 90047055 -34029117 - B1_Mm SINE Alu -8 139 1 1 1272 266 243 135 0 chr9 90047061 90047172 -34029000 - Tigger13a DNA MER2_type -447 324 199 1 1272 293 197 24 73 chr9 90047266 90047348 -34028824 - MER5A1 DNA MER1_type -51 115 38 1 1272 3189 68 10 2 chr9 90047638 90048035 -34028137 - MTB LTR MaLR 0 400 1 1 1272 657 0 0 0 chr9 90048060 90048133 -34028039 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1272 666 221 8 0 chr9 90048150 90048272 -34027900 - ID_B1 SINE B4 -8 216 94 1 1272 1045 124 9 5 chr9 90048393 90048605 -34027567 + (TTTC)n Simple_repeat Simple_repeat 1 212 0 1 1272 440 240 119 37 chr9 90048605 90048739 -34027433 - B1_Mur3 SINE Alu 0 149 5 1 1272 261 0 0 0 chr9 90050146 90050175 -34025997 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1272 186 133 0 0 chr9 90050178 90050208 -34025964 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1 1272 640 195 39 0 chr9 90050208 90050336 -34025836 - B1_Mus2 SINE Alu -5 142 10 1 1272 539 228 217 24 chr9 90050870 90051036 -34025136 + B3 SINE B2 2 199 -17 1 1272 220 121 75 15 chr9 90051048 90051115 -34025057 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1272 265 293 158 0 chr9 90051160 90051242 -34024930 + PB1 SINE Alu 3 97 -30 1 1272 2097 132 40 11 chr9 90051252 90051627 -34024545 - ORR1B1 LTR MaLR -8 386 1 1 1272 304 287 75 0 chr9 90051847 90051941 -34024231 - L2a LINE L2 -15 3411 3311 1 1272 726 155 4 16 chr9 90052023 90052268 -34023904 + (CA)n Simple_repeat Simple_repeat 1 241 0 1 1272 323 156 47 0 chr9 90052280 90052344 -34023828 - RLTR33 LTR ERVK -611 67 1 1 1272 1784 132 37 0 chr9 90052514 90052809 -34023363 + RMER6A LTR ERVK 451 756 0 1 1272 324 177 16 0 chr9 90052811 90052873 -34023299 - tRNA-Lys-AAG tRNA tRNA 0 76 14 1 1272 4207 204 49 48 chr9 90052875 90052987 -34023185 + MYSERV6-int LTR ERVK 7755 7825 -1134 1 1272 1267 41 0 0 chr9 90052987 90053134 -34023038 - B1_Mm SINE Alu 0 147 1 1 1272 4207 176 63 66 chr9 90053134 90053345 -34022827 + MYSERV6-int LTR ERVK 7826 8039 -920 1 1272 1339 99 5 20 chr9 90053345 90053540 -34022632 + B2_Mm1a SINE B2 1 192 -1 1 1272 4207 176 63 66 chr9 90053540 90054274 -34021898 + MYSERV6-int LTR ERVK 8040 8780 -179 1 1272 796 206 39 43 chr9 90054383 90054591 -34021581 + MYSERV-int LTR ERVK 6340 6546 -4 1 1272 1008 229 72 46 chr9 90054594 90055059 -34021113 + RLTR12B LTR ERVK 1 528 0 1 1272 1132 183 14 23 chr9 90055202 90055420 -34020752 + B3 SINE B2 1 216 0 1 1272 852 63 0 0 chr9 90055746 90055857 -34020315 + (TTTC)n Simple_repeat Simple_repeat 1 111 0 1 1272 495 0 0 0 chr9 90057009 90057064 -34019108 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1272 228 161 15 75 chr9 90057718 90057785 -34018387 + G-rich Low_complexity Low_complexity 5 67 0 1 1272 273 169 0 0 chr9 90057816 90057875 -34018297 + CT-rich Low_complexity Low_complexity 2 60 0 1 1272 279 0 0 0 chr9 90059689 90059720 -34016452 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1272 272 367 71 54 chr9 90060824 90061063 -34015109 - Charlie8 DNA MER1_type -2164 264 22 1 1272 252 0 0 0 chr9 90061346 90061374 -34014798 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1272 278 175 35 0 chr9 90061395 90061452 -34014720 - MER5A1 DNA MER1_type -60 106 52 1 1272 249 350 40 8 chr9 90061945 90062069 -34014103 + YREP_Mm Unknown Unknown 169 296 -1516 1 1272 491 311 69 39 chr9 90061958 90062162 -34014010 - ID_B1 SINE B4 -7 217 8 1 1272 1049 211 60 19 chr9 90062615 90062881 -34013291 - B4 SINE B4 -14 278 2 1 1272 1561 63 0 0 chr9 90062891 90063080 -34013092 - B2_Mm1a SINE B2 -3 190 2 1 1272 659 268 82 5 chr9 90063110 90063305 -34012867 - B3 SINE B2 -5 211 2 1 1272 297 343 92 38 chr9 90063305 90063557 -34012615 + Charlie4a DNA MER1_type 188 454 -54 1 1272 592 312 93 3 chr9 90063983 90064272 -34011900 - L2a LINE L2 -3 3423 3109 1 1272 540 136 0 0 chr9 90064397 90064485 -34011687 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1272 405 0 0 0 chr9 90064496 90064541 -34011631 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1272 902 248 75 26 chr9 90064549 90064814 -34011358 - B4 SINE B4 -14 278 1 1 1272 376 344 164 27 chr9 90065464 90065837 -34010335 - L2a LINE L2 -337 3082 2659 1 1272 1199 68 0 0 chr9 90065848 90065995 -34010177 + B1_Mus2 SINE Alu 1 147 0 1 1272 189 0 0 0 chr9 90066049 90066070 -34010102 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1272 223 322 8 57 chr9 90066070 90066192 -34009980 - PB1D10 SINE Alu 0 117 2 1 1272 562 187 0 18 chr9 90066852 90066961 -34009211 - B1_Mus1 SINE Alu -34 114 8 1 1272 186 43 0 0 chr9 90066968 90066991 -34009181 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1272 225 355 115 11 chr9 90067532 90067706 -34008466 - MIRb SINE MIR -59 209 18 1 1272 207 0 0 0 chr9 90068375 90068398 -34007774 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 1 1272 1450 143 14 0 chr9 90068729 90068952 -34007220 + URR1A DNA MER1_type 1 226 0 1 1272 200 274 0 0 chr9 90069324 90069375 -34006797 + (CAG)n Simple_repeat Simple_repeat 2 52 0 1 1272 194 0 39 0 chr9 90070149 90070175 -34005997 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1272 1150 71 0 0 chr9 90070175 90070315 -34005857 - B1_Mm SINE Alu -7 140 1 1 1272 1999 137 106 6 chr9 90070315 90070645 -34005527 - ORR1B2 LTR MaLR -4 363 1 1 1272 653 281 23 14 chr9 90071617 90071809 -34004363 + B4 SINE B4 57 245 -47 1 1272 264 284 0 39 chr9 90071959 90072036 -34004136 + B4 SINE B4 213 286 -6 1 1272 351 95 27 13 chr9 90072048 90072123 -34004049 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 1272 272 380 43 0 chr9 90073147 90073331 -34002841 - L1MD2 LINE L1 -31 6328 6137 1 1272 460 93 30 20 chr9 90073334 90073433 -34002739 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1272 205 200 47 59 chr9 90073446 90073531 -34002641 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1272 648 250 19 26 chr9 90073709 90073865 -34002307 - RSINE1 SINE B4 0 165 11 1 1272 329 311 7 57 chr9 90075221 90075361 -34000811 - MIRc SINE MIR -66 202 70 1 1272 870 168 200 11 chr9 90075972 90076147 -34000025 - B3 SINE B2 -6 210 3 2 1272 503 238 62 23 chr9 90076245 90076374 -33999798 - RSINE1 SINE B4 -28 137 4 2 1272 491 178 0 10 chr9 90076478 90076580 -33999592 + GA-rich Low_complexity Low_complexity 3 103 0 2 1272 308 319 33 91 chr9 90077309 90077519 -33998653 - HAL1 LINE L1 -2262 245 48 2 1272 317 254 26 42 chr9 90077760 90077889 -33998283 + MIRb SINE MIR 137 268 0 2 1272 540 0 0 0 chr9 90078235 90078295 -33997877 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1272 459 0 0 0 chr9 90078733 90078784 -33997388 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1272 187 305 131 24 chr9 90080857 90080941 -33995231 + MIRb SINE MIR 35 127 -141 2 1272 318 240 142 8 chr9 90082801 90082938 -33993234 - MIR3 SINE MIR -82 186 31 2 1272 193 324 118 35 chr9 90084256 90084400 -33991772 - MIR3 SINE MIR -42 166 11 2 1272 288 200 14 41 chr9 90085236 90085309 -33990863 + MIR SINE MIR 105 175 -87 2 1272 220 204 95 21 chr9 90091173 90091268 -33984904 - L2 LINE L2 -354 3065 2964 2 1272 297 0 0 0 chr9 90091273 90091306 -33984866 + (CAGGG)n Simple_repeat Simple_repeat 1 33 0 2 1272 189 293 100 54 chr9 90091312 90091442 -33984730 + MIR3 SINE MIR 12 147 -61 2 1272 201 288 52 52 chr9 90093908 90093985 -33982187 + MIR SINE MIR 47 123 -85 2 1272 259 331 185 7 chr9 90103449 90103747 -33972425 + L1MC LINE L1 5536 5886 -1996 2 1272 1288 81 5 5 chr9 90103760 90103947 -33972225 + Lx LINE L1 6467 6653 -1 2 1272 277 109 18 18 chr9 90104038 90104094 -33972078 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 2 1272 186 267 84 56 chr9 90105205 90105312 -33970860 + MIR SINE MIR 121 230 -32 2 1272 2390 160 34 22 chr9 90106309 90106420 -33969752 + MTC LTR MaLR 1 111 -310 2 1272 1172 192 25 68 chr9 90106420 90106655 -33969517 - URR1B DNA MER1_type 0 225 1 2 1272 2390 160 34 22 chr9 90106655 90106959 -33969213 + MTC LTR MaLR 112 421 0 2 1272 1146 66 0 0 chr9 90107170 90107307 -33968865 + B1_Mus1 SINE Alu 2 138 -10 2 1272 189 0 0 0 chr9 90107355 90107376 -33968796 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 2 1272 448 250 56 0 chr9 90107403 90107511 -33968661 + PB1D10 SINE Alu 4 117 0 2 1272 468 252 176 0 chr9 90108918 90109049 -33967123 - RSINE1 SINE B4 -9 156 3 2 1272 354 200 13 39 chr9 90111130 90111208 -33964964 + ID2 SINE ID 5 80 -3 2 1272 595 169 168 8 chr9 90112323 90112442 -33963730 - B1_Mur1 SINE Alu -7 142 5 2 1272 1625 47 0 0 chr9 90112812 90113002 -33963170 + B2_Mm1a SINE B2 4 193 0 2 1272 25 0 0 0 chr9 90113042 90113067 -33963105 + AT_rich Low_complexity Low_complexity 1 25 0 2 1272 370 342 0 8 chr9 90114229 90114347 -33961825 + PB1D10 SINE Alu 1 117 0 2 1272 489 271 16 41 chr9 90114476 90114599 -33961573 - PB1 SINE Alu -4 123 4 2 1272 475 316 87 61 chr9 90114691 90115214 -33960958 + MLT1E2 LTR MaLR 3 498 -129 2 1272 325 37 36 18 chr9 90116616 90116671 -33959501 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 2 1272 360 253 0 0 chr9 90118878 90118953 -33957219 + ID4_ SINE ID 2 76 -7 2 1272 537 187 27 27 chr9 90119094 90119204 -33956968 - B1_Mur2 SINE Alu -1 148 39 2 1272 348 194 0 40 chr9 90119139 90119214 -33956958 - MT2B LTR ERVL -344 257 186 2 1272 566 266 20 27 chr9 90119620 90119767 -33956405 + B1F SINE Alu 3 148 -1 2 1272 772 296 121 19 chr9 90119847 90120112 -33956060 + B4A SINE B4 1 292 0 2 1272 379 253 95 0 chr9 90121551 90121646 -33954526 + PB1D10 SINE Alu 7 110 -7 2 1272 508 292 148 6 chr9 90121697 90121866 -33954306 + B3A SINE B2 2 194 -4 2 1272 225 0 0 0 chr9 90122432 90122457 -33953715 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1272 250 253 25 25 chr9 90123234 90123315 -33952857 + MTEb LTR MaLR 296 376 -3 2 1272 249 376 29 10 chr9 90123369 90123392 -33952780 - ID_B1 SINE B4 -43 181 156 2 1272 375 23 0 0 chr9 90123392 90123436 -33952736 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1272 249 376 29 10 chr9 90123436 90123447 -33952725 - ID_B1 SINE B4 -69 155 83 2 1272 258 333 0 0 chr9 90123447 90123510 -33952662 - B1F1 SINE Alu -86 63 1 2 1272 234 320 152 7 chr9 90124371 90124522 -33951650 + L1ME1 LINE L1 4834 5006 -1140 2 1272 554 235 8 25 chr9 90124523 90124641 -33951531 + PB1D10 SINE Alu 2 117 0 2 1272 275 303 54 62 chr9 90124652 90124782 -33951390 + RMER12 LTR ERVK 704 832 -490 2 1272 805 257 106 44 chr9 90124782 90125055 -33951117 - B4A SINE B4 -2 290 1 2 1272 355 253 27 0 chr9 90125146 90125283 -33950889 + L1ME1 LINE L1 5220 5360 -786 2 1272 433 289 84 107 chr9 90125310 90125623 -33950549 + Tigger5 DNA MER2_type 8 271 -2135 2 1272 818 182 142 16 chr9 90125652 90125842 -33950330 + B3 SINE B2 3 216 0 2 1272 306 298 25 8 chr9 90125891 90126013 -33950159 + L1ME1 LINE L1 5451 5574 -870 2 1272 239 329 0 0 chr9 90126061 90126146 -33950026 + L1ME1 LINE L1 5918 6002 -177 2 1272 565 57 0 43 chr9 90126182 90126274 -33949898 + (TCCC)n Simple_repeat Simple_repeat 2 89 0 2 1272 534 246 7 113 chr9 90126276 90126418 -33949754 - B1F2 SINE Alu -9 140 14 2 1272 366 23 0 0 chr9 90126796 90126839 -33949333 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1272 1023 216 10 14 chr9 90126839 90127046 -33949126 + B3 SINE B2 4 209 -7 2 1272 710 304 68 9 chr9 90127160 90127379 -33948793 - B4A SINE B4 -49 243 12 2 1272 536 211 9 19 chr9 90127399 90127505 -33948667 - B1_Mus1 SINE Alu -25 123 19 2 1272 291 202 10 143 chr9 90127420 90127518 -33948654 - MT2B LTR ERVL -345 256 172 2 1272 417 39 0 0 chr9 90128141 90128192 -33947980 + (CAA)n Simple_repeat Simple_repeat 1 51 0 2 1272 263 28 0 27 chr9 90128511 90128548 -33947624 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2 1272 423 0 0 0 chr9 90130073 90130120 -33946052 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1272 321 319 120 80 chr9 90130798 90131074 -33945098 - Tigger13a DNA MER2_type -191 580 294 2 1272 1359 197 167 9 chr9 90131135 90131458 -33944714 + ORR1D1 LTR MaLR 1 374 0 2 1272 231 300 50 10 chr9 90131928 90132029 -33944143 - MIR SINE MIR -124 138 34 2 1272 246 361 43 50 chr9 90132393 90132537 -33943635 + MIRm SINE MIR 44 196 -72 2 1272 314 213 13 51 chr9 90133442 90133521 -33942651 + L1MB8 LINE L1 5268 5343 -803 2 1272 262 273 29 29 chr9 90133546 90133648 -33942524 + L1MB8 LINE L1 5405 5506 -673 2 1272 378 0 0 0 chr9 90133703 90133745 -33942427 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 2 1272 315 0 0 0 chr9 90133860 90133895 -33942277 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1272 306 283 7 68 chr9 90134169 90134264 -33941908 + L1MB8 LINE L1 5639 5734 -450 2 1272 760 243 42 42 chr9 90134264 90134479 -33941693 + B3 SINE B2 1 215 -1 2 1272 306 283 7 68 chr9 90134479 90134531 -33941641 + L1MB8 LINE L1 5735 5777 -407 2 1272 664 260 129 38 chr9 90134557 90134896 -33941276 + MTE2a LTR MaLR 10 379 0 2 1272 607 255 68 52 chr9 90134904 90135152 -33941020 + L1MB8 LINE L1 5806 6057 -121 2 1272 258 354 10 30 chr9 90135152 90135251 -33940921 + ID_B1 SINE B4 79 175 -49 2 1272 371 260 10 39 chr9 90135170 90135274 -33940898 + PB1D10 SINE Alu 16 116 -1 2 1272 238 162 298 48 chr9 90135286 90135390 -33940782 + L1MB8 LINE L1 6049 6178 0 2 1272 592 207 153 53 chr9 90136534 90136723 -33939449 + B3 SINE B2 9 216 0 2 1272 246 62 0 0 chr9 90138298 90138330 -33937842 + (CCTG)n Simple_repeat Simple_repeat 3 34 0 2 1272 414 0 0 0 chr9 90138330 90138375 -33937797 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 2 1272 351 0 0 0 chr9 90138409 90138448 -33937724 + (CAAT)n Simple_repeat Simple_repeat 3 41 0 2 1272 429 20 0 0 chr9 90138448 90138497 -33937675 + (CCTA)n Simple_repeat Simple_repeat 2 51 0 2 1272 216 111 0 0 chr9 90138511 90138547 -33937625 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 2 1272 1163 211 11 0 chr9 90138547 90138737 -33937435 - B3 SINE B2 -23 193 2 2 1272 244 245 0 0 chr9 90138932 90138985 -33937187 - ID2 SINE ID -28 55 3 2 1272 1461 129 4 39 chr9 90139890 90140124 -33936048 + URR1A DNA MER1_type 1 226 0 2 1272 273 57 0 0 chr9 90141205 90141240 -33934932 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 2 1272 270 315 0 0 chr9 90141342 90141423 -33934749 - MIRc SINE MIR -149 119 39 2 1272 758 266 17 0 chr9 90141823 90141996 -33934176 - B3A SINE B2 -22 176 1 2 1272 564 167 31 0 chr9 90142605 90142701 -33933471 + ID_B1 SINE B4 121 219 -5 2 1272 198 71 0 0 chr9 90142702 90142730 -33933442 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1272 393 271 186 0 chr9 90142756 90142885 -33933287 + ID_B1 SINE B4 9 161 -63 2 1272 39 0 0 0 chr9 90142894 90142933 -33933239 + AT_rich Low_complexity Low_complexity 1 39 0 2 1272 399 41 0 0 chr9 90143127 90143176 -33932996 + (CCA)n Simple_repeat Simple_repeat 2 50 0 2 1272 724 232 0 7 chr9 90143386 90143525 -33932647 + B1_Mur1 SINE Alu 7 144 -5 2 1272 502 300 59 13 chr9 90143544 90143696 -33932476 + RSINE1 SINE B4 1 159 -6 2 1272 1353 69 40 0 chr9 90143744 90143918 -33932254 - B2_Mm2 SINE B2 -14 181 1 2 1272 29 0 0 0 chr9 90143921 90143950 -33932222 + AT_rich Low_complexity Low_complexity 1 29 0 2 1272 1808 281 70 18 chr9 90144891 90145508 -33930664 + Lx8 LINE L1 6358 7006 -467 2 1272 403 306 18 27 chr9 90145533 90145644 -33930528 - PB1D10 SINE Alu -7 110 1 2 1272 703 298 58 11 chr9 90145696 90146053 -33930119 + L1MB5 LINE L1 5514 5904 -270 2 1272 502 283 98 30 chr9 90146288 90146452 -33929720 + B4A SINE B4 2 176 -116 2 1272 923 224 86 17 chr9 90147186 90147418 -33928754 - MTD LTR MaLR -28 391 144 2 1272 597 310 81 54 chr9 90147455 90147714 -33928458 + B4A SINE B4 8 273 -19 2 1272 480 294 114 9 chr9 90147808 90148028 -33928144 + Lx8 LINE L1 6795 7037 -436 3 1272 831 215 17 229 chr9 90149110 90149472 -33926700 + B4 SINE B4 8 292 0 3 1272 1417 62 40 0 chr9 90149867 90150044 -33926128 - B2_Mm2 SINE B2 -10 185 2 3 1272 360 0 0 0 chr9 90150068 90150108 -33926064 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1272 310 313 229 0 chr9 90150245 90150424 -33925748 + L1M5 LINE L1 4733 4952 -1194 3 1272 234 0 0 0 chr9 90151150 90151176 -33924996 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1272 528 200 91 0 chr9 90151179 90151289 -33924883 - B1_Mur2 SINE Alu -8 141 22 3 1272 707 266 52 47 chr9 90151289 90151502 -33924670 - B3 SINE B2 0 216 3 3 1272 270 0 0 0 chr9 90151686 90151716 -33924456 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1272 955 206 37 5 chr9 90152500 90152690 -33923482 + B3 SINE B2 15 210 -6 3 1272 336 297 30 0 chr9 90153844 90153945 -33922227 + U6 snRNA snRNA 1 104 -3 3 1272 369 266 177 0 chr9 90154013 90154126 -33922046 + B1F SINE Alu 1 133 -16 3 1272 279 247 41 0 chr9 90154650 90154723 -33921449 + RSINE1 SINE B4 50 125 -40 3 1272 325 233 136 23 chr9 90156093 90156181 -33919991 + B4A SINE B4 3 100 -192 3 1272 2097 133 75 9 chr9 90156643 90156992 -33919180 - ORR1D1 LTR MaLR -2 372 1 3 1272 457 282 47 6 chr9 90157514 90157701 -33918471 - L1MA4 LINE L1 -352 5939 5742 3 1272 245 253 59 24 chr9 90157804 90157889 -33918283 - MIR SINE MIR -158 104 17 3 1272 441 0 0 0 chr9 90158589 90158638 -33917534 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1272 1063 186 93 0 chr9 90158694 90158898 -33917274 + ID_B1 SINE B4 2 224 0 3 1272 620 295 79 11 chr9 90158946 90159124 -33917048 + MLT1A LTR MaLR 185 374 0 3 1272 377 253 200 43 chr9 90159316 90159586 -33916586 + MER58B DNA MER1_type 26 332 -9 3 1272 186 118 0 0 chr9 90159921 90159955 -33916217 + (TGGG)n Simple_repeat Simple_repeat 1 34 0 3 1272 631 330 57 84 chr9 90159964 90160262 -33915910 + B4A SINE B4 1 290 -2 3 1272 279 276 71 27 chr9 90160332 90160470 -33915702 - MLT1A LTR MaLR -32 342 191 3 1272 265 284 24 12 chr9 90161580 90161662 -33914510 + MIR3 SINE MIR 78 160 -48 3 1272 216 97 0 0 chr9 90162091 90162122 -33914050 + (TATG)n Simple_repeat Simple_repeat 4 34 0 3 1272 180 0 0 0 chr9 90162140 90162160 -33914012 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1272 597 250 89 13 chr9 90162177 90162335 -33913837 - B4 SINE B4 -74 218 49 3 1272 719 246 25 56 chr9 90162505 90162703 -33913469 + B3A SINE B2 2 193 -5 3 1272 592 279 105 11 chr9 90162836 90163017 -33913155 + B3A SINE B2 1 198 0 3 1272 286 273 80 0 chr9 90163012 90163100 -33913072 + PB1D9 SINE Alu 24 118 -2 3 1272 189 159 0 0 chr9 90163604 90163648 -33912524 + G-rich Low_complexity Low_complexity 1 44 0 3 1272 268 240 44 97 chr9 90164740 90164859 -33911313 - MIR SINE MIR -40 168 61 3 1272 345 292 17 12 chr9 90165449 90165622 -33910550 + C-rich Low_complexity Low_complexity 2 175 0 3 1272 204 246 47 23 chr9 90165565 90165694 -33910478 + (CCGCG)n Simple_repeat Simple_repeat 1 132 0 3 1272 202 245 0 0 chr9 90165961 90166010 -33910162 + L2a LINE L2 3378 3426 0 3 1272 213 296 179 21 chr9 90166050 90166195 -33909977 - L2a LINE L2 -1 3425 3258 3 1272 1168 179 73 64 chr9 90166259 90166584 -33909588 + MTD LTR MaLR 1 419 0 3 1272 399 274 0 28 chr9 90166626 90166735 -33909437 - PB1D10 SINE Alu -11 106 1 3 1272 200 224 40 20 chr9 90166739 90166789 -33909383 - MIR SINE MIR -51 211 161 3 1272 272 317 81 56 chr9 90166794 90166991 -33909181 - L2a LINE L2 -184 3242 3041 3 1272 678 232 70 94 chr9 90167019 90167190 -33908982 - B3 SINE B2 -27 168 2 3 1272 323 290 19 39 chr9 90167998 90168102 -33908070 - ORSL-2b DNA Tip100 -24 484 383 3 1272 332 275 0 0 chr9 90168151 90168220 -33907952 - URR1A DNA MER1_type -157 69 1 3 1272 681 222 105 6 chr9 90168220 90168399 -33907773 + B3 SINE B2 16 212 -4 3 1272 583 223 241 0 chr9 90168495 90168522 -33907650 - B3 SINE B2 -7 209 183 3 1272 188 67 0 32 chr9 90168522 90168553 -33907619 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1272 583 223 241 0 chr9 90168553 90168691 -33907481 - B3 SINE B2 -34 182 5 3 1272 373 250 51 77 chr9 90168841 90168958 -33907214 - PB1D10 SINE Alu 0 117 4 3 1272 230 344 0 0 chr9 90168901 90168965 -33907207 - B4A SINE B4 -147 145 82 3 1272 201 59 0 136 chr9 90169837 90169896 -33906276 + (CTGGGG)n Simple_repeat Simple_repeat 3 53 0 3 1272 321 271 0 28 chr9 90170935 90171007 -33905165 + L2b LINE L2 3274 3343 -32 3 1272 22 0 0 0 chr9 90171367 90171389 -33904783 + AT_rich Low_complexity Low_complexity 1 22 0 3 1272 5167 120 20 11 chr9 90171391 90172197 -33903975 - Lx2B LINE L1 -14 6986 6174 3 1272 624 234 14 55 chr9 90172288 90172433 -33903739 + B1_Mur1 SINE Alu 1 139 -10 3 1272 201 299 196 0 chr9 90172551 90172648 -33903524 + MIRm SINE MIR 84 199 -77 3 1272 219 252 130 46 chr9 90172687 90172795 -33903377 + B1_Mur2 SINE Alu 29 145 -4 3 1272 1771 243 50 78 chr9 90173282 90173848 -33902324 - RLTR20D LTR ERVK 0 568 19 3 1272 298 233 43 143 chr9 90173939 90174079 -33902093 - MER2 DNA MER2_type -35 310 185 3 1272 503 252 54 0 chr9 90174080 90174191 -33901981 - PB1D10 SINE Alu 0 117 1 3 1272 556 253 64 35 chr9 90174199 90174371 -33901801 - MER2 DNA MER2_type -160 185 9 3 1272 825 204 64 23 chr9 90174437 90174608 -33901564 + B3 SINE B2 28 205 -11 3 1272 771 300 56 80 chr9 90174650 90174936 -33901236 + B4A SINE B4 2 280 -12 3 1272 447 307 83 59 chr9 90175007 90175346 -33900826 - ORSL-2b DNA Tip100 -107 401 55 3 1272 2008 215 74 5 chr9 90175393 90175899 -33900273 + ORR1B1-int LTR MaLR 184 718 -652 3 1272 898 243 122 128 chr9 90176490 90176666 -33899506 - RLTR19-int LTR ERVK -1665 4472 4318 3 1272 1827 125 27 39 chr9 90176666 90176998 -33899174 - Lx2A1 LINE L1 0 7008 6681 3 19 898 243 122 128 chr9 90176998 90177614 -33898558 - RLTR19-int LTR ERVK -1820 4317 3681 3 1273 339 25 0 0 chr9 90177614 90177654 -33898518 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1273 213 39 0 0 chr9 90177654 90177680 -33898492 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1273 898 243 122 128 chr9 90177680 90177744 -33898428 - RLTR19-int LTR ERVK -2457 3680 3620 3 1273 24 0 0 0 chr9 90177837 90177861 -33898311 + AT_rich Low_complexity Low_complexity 1 24 0 3 1273 4549 124 22 30 chr9 90178106 90178763 -33897409 - RMER6A LTR ERVK 0 756 88 3 1273 4533 40 4 5 chr9 90178763 90179322 -33896850 + L1Md_F2 LINE L1 6023 6580 -2 3 1273 4549 124 22 30 chr9 90179322 90179426 -33896746 - RMER6A LTR ERVK -669 87 1 3 1273 272 297 93 8 chr9 90179442 90179571 -33896601 - MYSERV6-int LTR ERVK -279 8680 8541 3 1273 362 235 66 7 chr9 90179646 90179783 -33896389 + RLTR19-int LTR ERVK 2742 2886 -3251 3 1273 34405 57 9 18 chr9 90179951 90186205 -33889967 - L1Md_F2 LINE L1 -4 6578 387 3 1273 2066 89 0 7 chr9 90186438 90186720 -33889452 - L1_Mus2 LINE L1 0 6566 6287 3 1273 788 258 10 5 chr9 90187810 90188013 -33888159 - RLTR42-int LTR ERVK -4203 1319 1116 3 1273 1757 165 72 66 chr9 90188408 90188523 -33887649 - ORR1B2 LTR MaLR 0 367 250 3 1273 2256 128 71 0 chr9 90188523 90188891 -33887281 + ORR1B1 LTR MaLR 1 394 0 3 1273 1757 165 72 66 chr9 90188891 90189138 -33887034 - ORR1B2 LTR MaLR -118 249 4 3 1273 617 344 26 19 chr9 90189783 90190314 -33885858 + L1M2 LINE L1 2134 2668 -3475 3 1273 1337 290 96 11 chr9 90190302 90191139 -33885033 + L1M2 LINE L1 4419 5326 -817 3 1273 6074 94 21 22 chr9 90191146 90192132 -33884040 - MurERV4_19-int LTR ERVK -1698 4082 3098 3 1273 565 70 0 39 chr9 90192181 90192285 -33883887 + L1Md_F2 LINE L1 6481 6580 -2 3 1273 417 153 0 0 chr9 90192289 90192361 -33883811 + GA-rich Low_complexity Low_complexity 3 74 0 3 1273 302 276 0 0 chr9 90192362 90192449 -33883723 + L1_Mur3 LINE L1 5323 5409 -471 3 1273 6178 119 32 21 chr9 90192458 90193306 -33882866 - MurERV4_19-int LTR ERVK -2669 3111 2250 3 1273 1379 68 5 35 chr9 90193306 90193505 -33882667 - B2_Mm1t SINE B2 0 193 1 3 1273 6178 119 32 21 chr9 90193505 90193667 -33882505 - MurERV4_19-int LTR ERVK -3531 2249 2090 3 1273 751 190 258 34 chr9 90193665 90193803 -33882369 - MurERV4_19-int LTR ERVK -5453 327 173 3 1273 453 19 0 0 chr9 90193803 90193857 -33882315 + (CAA)n Simple_repeat Simple_repeat 2 55 0 3 1273 751 190 258 34 chr9 90193857 90193985 -33882187 - MurERV4_19-int LTR ERVK -5608 172 3 3 1273 244 188 29 0 chr9 90194164 90194233 -33881939 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1273 1332 260 110 60 chr9 90194247 90194882 -33881290 + RMER13A LTR ERVK 1 779 -129 3 1273 628 276 38 13 chr9 90195089 90195328 -33880844 - L1MA5A LINE L1 -409 5888 5644 3 1273 286 273 79 20 chr9 90195333 90195434 -33880738 - RMER20B LTR ERVK -17 610 504 3 1273 684 300 70 110 chr9 90195441 90195956 -33880216 - RMER20B LTR ERVK -46 581 30 3 1273 414 294 88 0 chr9 90196009 90196203 -33879969 - L1MA5A LINE L1 -1080 5063 4853 3 1273 6028 222 75 11 chr9 90196207 90197156 -33879016 + Lx7 LINE L1 4035 5073 -807 3 1273 711 0 0 0 chr9 90197156 90197235 -33878937 + (TTAGGG)n Simple_repeat Simple_repeat 2 80 0 3 1273 6028 228 74 14 chr9 90197235 90198205 -33877967 + Lx7 LINE L1 5074 6068 -1628 3 1273 22 35 0 0 chr9 90199173 90199202 -33876970 + AT_rich Low_complexity Low_complexity 1 29 0 3 1273 545 119 50 0 chr9 90199202 90199303 -33876869 - Lx4A LINE L1 -1 7057 6952 3 1273 183 139 0 0 chr9 90199355 90199391 -33876781 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1273 34301 63 6 5 chr9 90199431 90205577 -33870595 - L1Md_F3 LINE L1 -17 6567 416 3 1273 3317 114 32 8 chr9 90206667 90207171 -33869001 + Lx3C LINE L1 6457 6972 -4 3 1273 186 150 0 0 chr9 90207175 90207215 -33868957 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1273 321 358 71 40 chr9 90207531 90207784 -33868388 + MLT1G LTR MaLR 6 266 -325 3 1273 294 106 0 0 chr9 90208633 90208680 -33867492 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1273 1485 37 5 0 chr9 90209609 90209797 -33866375 - L1Md_F3 LINE L1 -226 6356 6168 3 1273 1712 23 26 31 chr9 90209799 90210027 -33866145 + L1Md_F3 LINE L1 6357 6583 -1 3 1273 513 71 0 28 chr9 90210755 90210827 -33865345 + U4 snRNA snRNA 9 78 -67 3 1273 298 284 16 74 chr9 90211752 90211881 -33864291 - BC1_Mm scRNA scRNA -32 120 1 3 1273 518 342 75 4 chr9 90211887 90212128 -33864044 - Lx8 LINE L1 -139 7334 7077 4 1273 264 213 79 53 chr9 90212445 90212559 -33863613 - MamRep434 DNA TcMar -164 262 146 4 1273 364 331 74 11 chr9 90212586 90212763 -33863409 - MIRb SINE MIR -49 219 28 4 1273 393 22 0 0 chr9 90212993 90213039 -33863133 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1273 21 0 0 0 chr9 90213165 90213186 -33862986 + AT_rich Low_complexity Low_complexity 1 21 0 4 1273 35085 53 4 9 chr9 90213941 90219674 -33856498 - L1Md_F2 LINE L1 -424 6158 458 4 1273 350 149 81 36 chr9 90219962 90220073 -33856099 - Lx9 LINE L1 -6 7638 7523 4 1273 1864 158 114 3 chr9 90220351 90220719 -33855453 - Lx5 LINE L1 -3 7047 6639 4 1273 812 191 43 0 chr9 90221084 90221225 -33854947 - B1_Mur3 SINE Alu -2 147 1 4 1273 267 306 0 0 chr9 90222141 90222203 -33853969 + PB1D10 SINE Alu 36 97 -20 4 1273 226 367 82 31 chr9 90222514 90222708 -33853464 + MIR SINE MIR 29 238 -30 4 1273 370 106 152 9 chr9 90223759 90223864 -33852308 + L1_Mus2 LINE L1 6447 6566 0 4 1273 1278 113 16 0 chr9 90223960 90224145 -33852027 + B2_Mm2 SINE B2 1 188 -7 4 1273 7130 64 24 8 chr9 90224214 90225610 -33850562 - L1_Mus1 LINE L1 0 6567 5161 4 1273 907 176 6 0 chr9 90225648 90225807 -33850365 - RMER5 LTR ERV1 -64 470 311 4 1273 2208 165 51 23 chr9 90225817 90226245 -33849927 + RLTR28 LTR ERVL 84 523 -1 4 1273 7593 54 0 17 chr9 90226661 90227699 -33848473 - L1_Mur1 LINE L1 -221 5665 4646 4 1273 8539 11 0 0 chr9 90227724 90228923 -33847249 - L1Md_T LINE L1 0 6582 5384 4 1273 388 58 0 92 chr9 90228983 90229059 -33847113 - L1Md_F2 LINE L1 0 6582 6514 4 1273 265 302 0 65 chr9 90230372 90230464 -33845708 - L2a LINE L2 -4 3422 3337 4 1273 1102 208 164 66 chr9 90230769 90230974 -33845198 - ORR1D1 LTR MaLR -1 373 178 4 1273 627 14 0 0 chr9 90230974 90231046 -33845126 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1273 1102 208 164 66 chr9 90231046 90231175 -33844997 - ORR1D1 LTR MaLR -197 177 8 4 1273 634 260 20 0 chr9 90231345 90231495 -33844677 + MER5B DNA MER1_type 1 153 -25 4 1273 6373 62 1 2 chr9 90231640 90232491 -33843681 - L1_Mus2 LINE L1 0 6566 5717 4 1273 662 234 216 0 chr9 90232818 90232985 -33843187 - B3 SINE B2 -13 203 1 4 1273 673 107 0 47 chr9 90233125 90233253 -33842919 - L1Md_F2 LINE L1 -3 6582 6461 4 1273 33017 76 5 0 chr9 90233279 90238050 -33838122 - L1Md_F2 LINE L1 0 5886 1039 4 1273 36146 48 2 14 chr9 90238051 90244218 -33831954 - L1Md_A LINE L1 -2 6580 489 4 1273 3295 107 101 27 chr9 90244217 90244814 -33831358 - L1Md_F LINE L1 -5496 1023 383 4 1273 750 200 114 10 chr9 90244814 90245042 -33831130 - L1VL1 LINE L1 -6063 359 71 4 1273 864 166 7 21 chr9 90245763 90245905 -33830267 + B1_Mur3 SINE Alu 3 142 -7 4 1273 1140 56 0 0 chr9 90246833 90246975 -33829197 + U1 snRNA snRNA 2 143 -22 4 1273 22 0 0 0 chr9 90246975 90246997 -33829175 + AT_rich Low_complexity Low_complexity 1 22 0 4 1273 204 343 0 0 chr9 90247288 90247306 -33828866 + polypurine Low_complexity Low_complexity 4 21 0 4 1273 297 0 0 0 chr9 90247306 90247339 -33828833 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1273 204 343 0 0 chr9 90247339 90247390 -33828782 + polypurine Low_complexity Low_complexity 22 72 0 4 1273 46 0 0 0 chr9 90247427 90247473 -33828699 + AT_rich Low_complexity Low_complexity 1 46 0 4 1273 968 247 90 16 chr9 90248331 90248709 -33827463 + Lx9 LINE L1 7238 7643 -1 4 1273 254 213 29 6 chr9 90249050 90249131 -33827041 - L1_Mur3 LINE L1 -890 4990 4896 4 1273 2254 227 105 21 chr9 90249117 90249728 -33826444 + Lx9 LINE L1 5264 5974 -1670 4 1273 1029 112 118 6 chr9 90249728 90249898 -33826274 + B2_Mm2 SINE B2 1 189 -6 4 1273 2254 321 98 40 chr9 90249898 90251293 -33824879 + Lx9 LINE L1 5975 7417 -227 4 1273 252 0 0 0 chr9 90251303 90251331 -33824841 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1273 33 25 0 0 chr9 90251601 90251641 -33824531 + AT_rich Low_complexity Low_complexity 1 40 0 4 1273 357 143 0 73 chr9 90252019 90252087 -33824085 - RMER5 LTR ERV1 -11 523 461 4 1273 296 48 0 23 chr9 90252229 90252272 -33823900 + (CCCCCT)n Simple_repeat Simple_repeat 2 43 0 4 1273 330 62 0 20 chr9 90252342 90252391 -33823781 - L1_Mus2 LINE L1 -9 6557 6510 4 1273 1218 123 17 14 chr9 90254173 90254383 -33821789 + ORR1B1 LTR MaLR 1 190 -204 4 1273 3028 177 64 30 chr9 90254383 90255095 -33821077 - RMER19B LTR ERVK 0 902 1 4 1273 1300 145 14 0 chr9 90255095 90255302 -33820870 + ORR1B1 LTR MaLR 185 394 0 4 1273 23 54 0 0 chr9 90256287 90256324 -33819848 + AT_rich Low_complexity Low_complexity 1 37 0 4 1273 265 298 0 0 chr9 90256563 90256620 -33819552 - B1F SINE Alu -90 59 3 4 1273 310 167 16 32 chr9 90256985 90257047 -33819125 + RMER15 LTR ERVL 403 463 -112 4 1273 986 315 73 28 chr9 90257316 90257741 -33818431 + RMER15-int LTR ERVL 214 657 -4342 4 1273 396 0 0 0 chr9 90257840 90257884 -33818288 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 1273 1468 284 136 16 chr9 90258203 90258830 -33817342 + RMER15-int LTR ERVL 728 1442 -3557 4 1273 1138 178 27 9 chr9 90258830 90259051 -33817121 + URR1B DNA MER1_type 1 225 0 4 1273 1468 280 82 24 chr9 90259051 90259266 -33816906 + RMER15-int LTR ERVL 1443 1657 -3342 4 1273 189 333 0 0 chr9 90259672 90259717 -33816455 + L2c LINE L2 3289 3333 -54 4 1273 560 263 38 44 chr9 90260061 90260244 -33815928 - B3A SINE B2 -16 182 1 4 1273 441 265 50 25 chr9 90260492 90260612 -33815560 + B1_Mur1 SINE Alu 26 148 -1 4 1273 780 111 0 0 chr9 90260663 90260780 -33815392 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 4 1273 7608 30 7 1 chr9 90260780 90262175 -33813997 - L1Md_T LINE L1 -18 6564 5166 4 1273 3262 202 57 1 chr9 90262264 90262968 -33813204 - RMER1B Other Other 0 1066 7 4 1273 210 0 0 107 chr9 90263606 90263662 -33812510 + (CTAAT)n Simple_repeat Simple_repeat 4 53 0 4 1273 735 188 7 14 chr9 90265548 90265688 -33810484 - B1_Mm SINE Alu -5 142 4 4 1273 321 274 0 89 chr9 90265580 90265704 -33810468 - MT2B LTR ERVL -337 264 152 4 1273 2021 299 137 38 chr9 90265713 90266868 -33809304 - Lx7 LINE L1 -2 7471 6161 4 1273 239 79 26 0 chr9 90266868 90266906 -33809266 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 4 1273 2021 316 124 23 chr9 90266906 90267071 -33809101 - Lx7 LINE L1 -1536 6160 6001 4 1273 1756 265 66 29 chr9 90267067 90267898 -33808274 - L1_Mur3 LINE L1 -3139 2741 1880 4 1273 305 258 61 85 chr9 90268256 90268421 -33807751 - L1MEa LINE L1 -5189 881 721 4 1273 669 58 0 0 chr9 90268513 90268599 -33807573 + (TCCC)n Simple_repeat Simple_repeat 3 88 0 4 1273 270 0 0 0 chr9 90268599 90268629 -33807543 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 4 1273 10964 55 4 2 chr9 90269017 90271197 -33804975 - L1Md_F3 LINE L1 0 6584 4400 4 1273 8265 112 13 23 chr9 90271194 90273580 -33802592 - L1Md_F3 LINE L1 -3514 2369 9 4 1273 353 70 0 17 chr9 90273653 90273711 -33802461 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1273 939 301 66 15 chr9 90274147 90274794 -33801378 - L1M2 LINE L1 -840 6002 5318 4 1273 896 203 0 0 chr9 90274876 90275024 -33801148 - B1_Mur4 SINE Alu 0 150 3 4 1273 299 320 10 11 chr9 90275027 90275243 -33800929 - L1M2 LINE L1 -4086 2499 2212 4 1273 884 167 20 0 chr9 90275499 90275649 -33800523 + URR1A DNA MER1_type 6 158 -68 4 1273 1049 161 59 41 chr9 90275653 90275873 -33800299 - MTD LTR MaLR 0 419 196 4 1273 681 102 8 17 chr9 90275874 90275993 -33800179 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 4 1273 562 69 0 0 chr9 90275999 90276086 -33800086 - L1_Mus3 LINE L1 0 6638 6552 4 1273 3450 51 0 2 chr9 90276086 90276536 -33799636 + L1Md_F3 LINE L1 6045 6493 -91 4 1273 790 20 39 0 chr9 90276532 90276634 -33799538 - L1_Mus3 LINE L1 -206 6432 6327 4 1273 900 228 88 49 chr9 90276634 90276860 -33799312 - MTD LTR MaLR -184 235 1 4 1273 4777 168 15 4 chr9 90277351 90278264 -33797908 + Lx3C LINE L1 5806 6723 -253 4 1273 733 213 14 0 chr9 90278273 90278414 -33797758 - B1_Mur3 SINE Alu -6 143 1 4 1273 432 0 0 0 chr9 90279080 90279128 -33797044 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1273 777 217 25 6 chr9 90279479 90279637 -33796535 + B3A SINE B2 1 161 -37 4 1273 352 398 8 8 chr9 90280727 90280856 -33795316 + ID_B1 SINE B4 80 208 -16 4 1273 452 294 110 78 chr9 90281659 90282094 -33794078 - L1MC5 LINE L1 -214 7747 7299 4 1273 595 285 3 40 chr9 90282097 90282393 -33793779 + L1_Mur3 LINE L1 2715 2999 -2881 4 1273 1460 305 29 36 chr9 90282392 90282947 -33793225 + Lx8 LINE L1 6400 6950 -523 4 1273 4468 178 48 71 chr9 90282954 90283878 -33792294 + RMER19B LTR ERVK 1 902 0 4 1273 473 315 76 19 chr9 90283897 90284159 -33792013 + Lx8 LINE L1 7165 7441 -32 4 1273 4061 129 33 3 chr9 90284296 90284933 -33791239 - Lx2 LINE L1 -2 6995 6340 4 1273 36819 36 10 7 chr9 90284933 90291044 -33785128 - L1Md_T LINE L1 -7 6575 442 4 1273 493 161 0 0 chr9 90291045 90291126 -33785046 - Lx2 LINE L1 -644 6353 6273 4 1273 393 22 0 0 chr9 90291321 90291367 -33784805 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 4 1273 1122 99 0 0 chr9 90291367 90291518 -33784654 - B2_Mm2 SINE B2 -44 151 1 4 1273 1159 243 190 42 chr9 90291549 90292043 -33784129 - RMER2 LTR ERV1 0 567 1 4 1273 390 309 78 26 chr9 90292046 90292199 -33783973 + ORR1E LTR MaLR 36 196 -163 4 1273 3024 80 5 2 chr9 90292242 90292641 -33783531 - MTB LTR MaLR 0 400 1 4 1273 441 320 76 27 chr9 90292897 90293303 -33782869 + MLT1C LTR MaLR 7 465 -2 4 1273 500 347 8 0 chr9 90293345 90293469 -33782703 + RSINE1 SINE B4 35 159 -6 4 1273 216 250 0 0 chr9 90293569 90293665 -33782507 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 1273 403 255 30 20 chr9 90293874 90293974 -33782198 + MLT1A1 LTR MaLR 296 396 -12 4 1273 334 397 67 0 chr9 90294174 90294383 -33781789 - MIRc SINE MIR -22 246 24 4 1273 351 0 0 0 chr9 90296622 90296661 -33779511 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1273 4626 87 27 9 chr9 90296822 90297481 -33778691 - Lx2 LINE L1 -2 6995 6325 4 1273 441 0 0 0 chr9 90297490 90297539 -33778633 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1273 549 0 0 0 chr9 90297539 90297599 -33778573 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1273 594 303 31 16 chr9 90300769 90301024 -33775148 - RLTR42-int LTR ERVK -4123 1399 1141 5 1273 723 24 0 0 chr9 90301030 90301115 -33775057 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1273 1231 41 7 0 chr9 90301122 90301268 -33774904 - B1_Mus2 SINE Alu 0 147 1 5 1273 314 216 43 54 chr9 90303203 90303296 -33772876 - RLTR40 LTR ERVK -234 583 492 5 1273 723 54 0 0 chr9 90303368 90303460 -33772712 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 5 1273 916 275 124 40 chr9 90303686 90304212 -33771960 - RLTR40 LTR ERVK -229 588 19 5 1273 1125 220 23 19 chr9 90304822 90305082 -33771090 - Lx9 LINE L1 -832 6812 6552 5 1273 326 186 85 0 chr9 90305082 90305141 -33771031 - ID_B1 SINE B4 -16 208 145 5 1273 273 250 103 52 chr9 90305141 90305179 -33770993 - B1F2 SINE Alu -16 133 32 5 1273 624 83 46 9 chr9 90305232 90305341 -33770831 - Lx3_Mus LINE L1 -67 6942 6830 5 1273 739 196 179 27 chr9 90305716 90305900 -33770272 + B3 SINE B2 1 212 -4 5 1273 240 188 28 73 chr9 90305906 90306015 -33770157 + A-rich Low_complexity Low_complexity 2 105 0 5 1273 473 309 24 0 chr9 90306016 90306181 -33769991 - Lx7 LINE L1 -375 7321 7153 5 1273 901 261 85 12 chr9 90306184 90306514 -33769658 - Lx7 LINE L1 -1327 6369 6016 5 1273 27 29 0 0 chr9 90306570 90306604 -33769568 + AT_rich Low_complexity Low_complexity 1 34 0 5 1273 990 223 5 14 chr9 90306966 90307175 -33768997 - B3 SINE B2 -9 207 1 5 1273 260 356 17 9 chr9 90307368 90307484 -33768688 - MLT1N2 LTR MaLR -2 560 444 5 1273 288 381 44 22 chr9 90307720 90307900 -33768272 - MLT1N2 LTR MaLR -368 194 11 5 1274 2032 260 75 18 chr9 90309253 90310052 -33766120 + L1_Mur3 LINE L1 3980 4824 -1056 5 1274 27 0 0 0 chr9 90310053 90310080 -33766092 + AT_rich Low_complexity Low_complexity 1 27 0 5 1274 1690 129 77 0 chr9 90310088 90310360 -33765812 - Lx3A LINE L1 -6 6975 6683 5 1274 272 242 90 10 chr9 90310375 90310475 -33765697 + Lx8 LINE L1 6379 6486 -987 5 1274 337 282 0 0 chr9 90310473 90310551 -33765621 + Lx7 LINE L1 6643 6720 -976 5 1274 337 172 11 22 chr9 90310558 90310647 -33765525 + G-rich Low_complexity Low_complexity 5 92 0 5 1274 295 177 35 0 chr9 90310645 90310758 -33765414 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 5 1274 302 243 0 54 chr9 90310799 90310873 -33765299 - B4 SINE B4 -8 284 215 5 1274 9555 122 17 32 chr9 90310888 90313567 -33762605 - L1_Mus4 LINE L1 -6 6630 4002 5 1274 245 81 0 51 chr9 90313567 90313606 -33762566 - B4 SINE B4 -66 226 190 5 1274 359 157 14 0 chr9 90313744 90313814 -33762358 + CT-rich Low_complexity Low_complexity 3 73 0 5 1274 1135 84 0 0 chr9 90313891 90314034 -33762138 + B1_Mus1 SINE Alu 2 144 -4 5 1274 300 27 0 0 chr9 90314035 90314072 -33762100 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 1274 434 304 60 30 chr9 90314093 90314361 -33761811 + B4A SINE B4 1 276 -16 5 1274 300 343 90 18 chr9 90315731 90316010 -33760162 - Lx8 LINE L1 -193 7280 6982 5 1274 5046 151 30 50 chr9 90316929 90317784 -33758388 - L1_Mus4 LINE L1 0 6636 5798 5 1274 1090 95 0 7 chr9 90317784 90317933 -33758239 - B1_Mus1 SINE Alu 0 148 1 5 1274 5046 151 30 50 chr9 90317933 90318148 -33758024 - L1_Mus4 LINE L1 -839 5797 5587 5 1274 272 289 26 90 chr9 90318167 90318323 -33757849 + MLT1K LTR MaLR 437 582 -13 5 1274 1184 62 0 0 chr9 90318523 90318667 -33757505 - B1_Mm SINE Alu -2 145 2 5 1274 1816 168 12 16 chr9 90318939 90319259 -33756913 - ORR1A4 LTR MaLR -8 321 3 5 1274 236 285 129 14 chr9 90319261 90319400 -33756772 + L1_Mur3 LINE L1 4844 4998 -882 5 1274 198 0 0 0 chr9 90319411 90319433 -33756739 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 5 1274 554 273 34 0 chr9 90319575 90319751 -33756421 - L1_Mur3 LINE L1 -323 5557 5376 5 1274 1833 249 34 91 chr9 90319815 90320186 -33755986 - Lx8 LINE L1 -121 7352 7010 5 1274 880 162 0 7 chr9 90320186 90320335 -33755837 - B1_Mus1 SINE Alu 0 148 1 5 1274 1833 249 34 91 chr9 90320335 90320577 -33755595 - Lx8 LINE L1 -464 7009 6774 5 1274 1983 143 99 39 chr9 90320581 90320945 -33755227 + ORR1B1 LTR MaLR 1 386 -8 5 1274 1366 108 0 5 chr9 90321030 90321225 -33754947 - B2_Mm2 SINE B2 -1 194 1 5 1274 3634 292 101 28 chr9 90321340 90322233 -33753939 - L1_Mur3 LINE L1 -700 5180 4212 5 1274 378 0 0 0 chr9 90322233 90322275 -33753897 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1274 243 0 0 0 chr9 90322275 90322301 -33753871 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1274 3634 292 101 28 chr9 90322301 90323973 -33752199 - L1_Mur3 LINE L1 -1669 4211 2429 5 1274 1483 119 34 8 chr9 90323995 90324232 -33751940 - L1_Mus3 LINE L1 -12 6626 6384 5 1274 2321 79 9 0 chr9 90324246 90324575 -33751597 - L1_Mus3 LINE L1 -512 6126 5795 5 1274 3264 111 0 0 chr9 90324572 90325057 -33751115 + L1_Mus3 LINE L1 5270 5754 -129 5 1274 1004 330 104 41 chr9 90325398 90325957 -33750215 - MER92B LTR ERV1 -28 608 15 5 1274 21 36 0 0 chr9 90326143 90326171 -33750001 + AT_rich Low_complexity Low_complexity 1 28 0 5 1274 494 315 57 52 chr9 90326512 90326954 -33749218 + Lx8 LINE L1 6981 7424 -49 5 1274 6956 24 5 0 chr9 90327420 90328230 -33747942 - L1Md_F3 LINE L1 -14 6570 5757 5 1274 510 295 40 13 chr9 90328233 90328384 -33747788 + B3A SINE B2 38 192 -6 5 1274 335 291 138 25 chr9 90328542 90328817 -33747355 - L1ME3A LINE L1 -197 5976 5671 5 1274 229 234 71 94 chr9 90329081 90329166 -33747006 + B4 SINE B4 1 83 -209 5 1274 474 351 87 64 chr9 90329200 90329327 -33746845 + B4 SINE B4 67 212 -80 5 1274 414 0 0 0 chr9 90329327 90329373 -33746799 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 5 1274 474 351 87 64 chr9 90329373 90329464 -33746708 + B4 SINE B4 213 290 -2 5 1274 320 331 7 36 chr9 90329481 90329619 -33746553 - RMER15 LTR ERVL -139 436 303 5 1274 234 0 0 0 chr9 90330149 90330175 -33745997 + (TCC)n Simple_repeat Simple_repeat 3 28 0 5 1274 252 0 0 0 chr9 90330175 90330203 -33745969 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1274 522 255 48 96 chr9 90330240 90330448 -33745724 + B3A SINE B2 1 198 0 5 1274 1352 207 50 0 chr9 90330602 90330901 -33745271 - Lx6 LINE L1 -10 7450 7137 5 1274 3026 228 72 19 chr9 90330895 90332157 -33744015 - L1_Mur3 LINE L1 -4376 1504 170 5 1274 709 270 4 21 chr9 90332128 90332370 -33743802 - L1_Mur3 LINE L1 -7115 613 376 5 1274 423 311 43 18 chr9 90332569 90332733 -33743439 + MLT1B LTR MaLR 110 277 -113 5 1274 220 284 72 29 chr9 90333466 90333535 -33742637 - ID SINE ID -141 83 12 5 1274 400 294 33 8 chr9 90333602 90333722 -33742450 - LTR16C LTR ERVL 0 489 367 5 1274 491 213 87 8 chr9 90333732 90333859 -33742313 - ORR1C2 LTR MaLR -82 312 177 5 1274 227 239 0 112 chr9 90333869 90333949 -33742223 - L1_Rod LINE L1 -3663 2184 2114 5 1274 230 235 30 10 chr9 90333981 90334080 -33742092 + (TA)n Simple_repeat Simple_repeat 2 102 0 5 1274 24 53 0 0 chr9 90334083 90334121 -33742051 + AT_rich Low_complexity Low_complexity 1 38 0 5 1274 287 212 12 0 chr9 90335062 90335147 -33741025 + CT-rich Low_complexity Low_complexity 3 88 0 5 1274 781 169 6 6 chr9 90335172 90335333 -33740839 + CT-rich Low_complexity Low_complexity 3 163 0 5 1274 3453 51 0 5 chr9 90335576 90336011 -33740161 + L1Md_F2 LINE L1 6146 6578 -4 5 1274 525 230 114 12 chr9 90336033 90336200 -33739972 + MER45R DNA Tip100 1385 1568 -13 5 1274 477 184 0 0 chr9 90336287 90336401 -33739771 + GA-rich Low_complexity Low_complexity 1 114 0 5 1274 639 0 0 0 chr9 90337340 90337411 -33738761 + (CATATA)n Simple_repeat Simple_repeat 5 75 0 5 1274 419 290 0 18 chr9 90337424 90337533 -33738639 - B1F2 SINE Alu 0 149 43 5 1274 212 254 186 0 chr9 90337567 90337626 -33738546 - ID4_ SINE ID -11 72 3 5 1274 5904 78 30 19 chr9 90337991 90338825 -33737347 - Lx3_Mus LINE L1 -8 7001 6159 5 1274 2909 237 76 48 chr9 90338852 90339854 -33736318 + L1_Rod LINE L1 2449 3474 -2373 5 1274 492 18 0 0 chr9 90339854 90339911 -33736261 + (TAA)n Simple_repeat Simple_repeat 1 57 0 5 1274 2909 237 76 48 chr9 90339911 90340008 -33736164 + L1_Rod LINE L1 3475 3579 -2268 5 1274 271 277 16 89 chr9 90340025 90340148 -33736024 + Lx9 LINE L1 7022 7135 -509 5 1274 229 228 93 52 chr9 90340177 90340274 -33735898 + Lx9 LINE L1 7261 7361 -283 5 1274 23 0 0 0 chr9 90340357 90340380 -33735792 + AT_rich Low_complexity Low_complexity 1 23 0 5 1274 309 281 154 18 chr9 90340430 90340651 -33735521 + Lx9 LINE L1 7344 7594 -50 5 1274 25 0 0 0 chr9 90340699 90340724 -33735448 + AT_rich Low_complexity Low_complexity 1 25 0 5 1274 2628 92 121 2 chr9 90341155 90341568 -33734604 + Lx LINE L1 6192 6653 -1 5 1274 28 71 0 0 chr9 90342285 90342341 -33733831 + AT_rich Low_complexity Low_complexity 1 56 0 5 1274 30 59 0 0 chr9 90342788 90342839 -33733333 + AT_rich Low_complexity Low_complexity 1 51 0 5 1274 4109 119 18 0 chr9 90344204 90344825 -33731347 + Lx3C LINE L1 6343 6974 -2 5 1274 1847 179 0 12 chr9 90345251 90345573 -33730599 - MTC LTR MaLR 0 421 104 5 1274 240 266 25 25 chr9 90345593 90345674 -33730498 - MTC LTR MaLR -237 184 104 5 1274 767 244 12 23 chr9 90345644 90345816 -33730356 - MTB LTR MaLR -230 170 1 5 1274 423 0 0 0 chr9 90345920 90345967 -33730205 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1274 26 0 0 0 chr9 90347115 90347141 -33729031 + AT_rich Low_complexity Low_complexity 1 26 0 5 1274 1234 192 62 55 chr9 90347141 90347385 -33728787 - Lx4B LINE L1 -9 7049 6800 5 1274 1396 220 55 199 chr9 90347385 90348099 -33728073 - RMER19C LTR ERVK 0 611 1 5 1274 1234 192 62 55 chr9 90348099 90348162 -33728010 - Lx4B LINE L1 -259 6799 6740 5 1274 2721 169 78 18 chr9 90348166 90348733 -33727439 - L1_Mur2 LINE L1 -5904 808 208 5 1274 1051 289 63 90 chr9 90349010 90349489 -33726683 + RMER5 LTR ERV1 1 466 -68 5 1274 4530 114 4 16 chr9 90349593 90350278 -33725894 - Lx2A1 LINE L1 -2 7006 6330 5 1274 7952 16 0 0 chr9 90350278 90351190 -33724982 + L1Md_T LINE L1 4675 5586 -297 5 1274 8148 50 0 0 chr9 90351190 90352186 -33723986 + L1Md_T LINE L1 5587 6582 0 5 1274 411 148 0 0 chr9 90352201 90352262 -33723910 - Lx2A1 LINE L1 -662 6346 6286 5 1274 782 111 0 0 chr9 90352264 90352372 -33723800 + B2_Mm2 SINE B2 18 125 -70 5 1274 646 297 87 37 chr9 90353599 90353921 -33722251 + RMER5 LTR ERV1 45 382 -152 5 1274 1474 304 82 12 chr9 90355243 90355838 -33720334 - Lx9 LINE L1 -641 7003 6367 6 1274 195 114 0 0 chr9 90355852 90355887 -33720285 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1274 366 286 104 18 chr9 90356031 90356252 -33719920 - Lx9 LINE L1 -1594 6050 5811 6 1274 1103 247 96 47 chr9 90356252 90356596 -33719576 + ORR1D2 LTR MaLR 9 369 -1 6 1274 830 209 6 0 chr9 90356596 90356759 -33719413 - Lx9 LINE L1 -135 5712 5549 6 1274 21 36 0 0 chr9 90357334 90357362 -33718810 + AT_rich Low_complexity Low_complexity 1 28 0 6 1274 502 305 99 54 chr9 90357862 90358195 -33717977 + MLT1A1 LTR MaLR 57 404 -4 6 1274 435 38 0 0 chr9 90358341 90358394 -33717778 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 6 1274 23 33 0 0 chr9 90358417 90358447 -33717725 + AT_rich Low_complexity Low_complexity 1 30 0 6 1274 2105 167 2 69 chr9 90358447 90358865 -33717307 - Lx4A LINE L1 -3 7055 6666 6 1274 204 345 11 11 chr9 90358938 90359029 -33717143 + MIR SINE MIR 53 143 -119 6 1274 404 321 30 42 chr9 90359308 90359474 -33716698 + ORR1E LTR MaLR 20 183 -176 6 1274 277 327 100 0 chr9 90359486 90359596 -33716576 + ORR1E LTR MaLR 259 379 0 6 1274 459 227 227 0 chr9 90360010 90360186 -33715986 - B3 SINE B2 0 216 1 6 1274 19103 74 22 3 chr9 90360364 90363785 -33712387 - L1VL4 LINE L1 0 3559 68 6 1274 486 49 0 0 chr9 90364360 90364421 -33711751 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1274 421 347 80 56 chr9 90364481 90364683 -33711489 - MLT2D LTR ERVL -116 298 95 6 1274 3474 33 14 5 chr9 90364683 90365114 -33711058 + L1Md_F3 LINE L1 6150 6584 0 6 1274 421 347 80 56 chr9 90365114 90365198 -33710974 - MLT2D LTR ERVL -320 94 7 6 1274 248 161 0 35 chr9 90365704 90365762 -33710410 + GA-rich Low_complexity Low_complexity 1 56 0 6 1274 396 0 0 0 chr9 90366667 90366711 -33709461 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1274 1173 41 7 0 chr9 90366715 90366860 -33709312 - B1_Mm SINE Alu 0 147 2 6 1274 23 78 0 0 chr9 90366863 90366914 -33709258 + AT_rich Low_complexity Low_complexity 1 51 0 6 1274 22 0 0 0 chr9 90368778 90368800 -33707372 + AT_rich Low_complexity Low_complexity 1 22 0 6 1274 3103 222 47 18 chr9 90369496 90370151 -33706021 - Lx6 LINE L1 -3 7457 6784 6 1274 204 40 0 0 chr9 90370197 90370222 -33705950 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1274 1740 153 46 55 chr9 90370257 90370583 -33705589 + RMER6B LTR ERVK 113 435 -26 6 1274 281 219 38 30 chr9 90370586 90370718 -33705454 + (TA)n Simple_repeat Simple_repeat 1 133 0 6 1274 508 224 0 0 chr9 90370742 90370840 -33705332 - Lx6 LINE L1 -791 6669 6572 6 1274 4656 165 70 23 chr9 90370840 90371695 -33704477 + RMER19B LTR ERVK 8 902 0 6 1274 4501 205 29 20 chr9 90371695 90372844 -33703328 - Lx6 LINE L1 -882 6578 5401 6 1274 7792 162 30 36 chr9 90372830 90373680 -33702492 + L1_Mur3 LINE L1 3833 4658 -1222 6 1274 420 20 0 0 chr9 90373680 90373729 -33702443 + (CAA)n Simple_repeat Simple_repeat 2 50 0 6 1274 7792 162 30 36 chr9 90373729 90374462 -33701710 + L1_Mur3 LINE L1 4659 5405 -475 6 1274 253 323 0 0 chr9 90374496 90374561 -33701611 + MTE2a LTR MaLR 57 121 -258 6 1274 569 319 96 23 chr9 90374578 90374838 -33701334 + MT2A LTR ERVL 157 435 -98 6 1274 381 317 20 51 chr9 90374833 90375029 -33701143 + MT2A LTR ERVL 344 533 0 6 1274 579 51 0 0 chr9 90375147 90375226 -33700946 + (CCAA)n Simple_repeat Simple_repeat 2 80 0 6 1274 317 309 102 54 chr9 90375412 90375559 -33700613 + RSINE1 SINE B4 8 161 -4 6 1274 22 0 0 0 chr9 90376551 90376573 -33699599 + AT_rich Low_complexity Low_complexity 1 22 0 6 1274 472 215 38 75 chr9 90376573 90376759 -33699413 - Lx9 LINE L1 -8 7636 7458 6 1274 182 37 37 0 chr9 90376764 90376791 -33699381 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1274 4934 57 0 11 chr9 90376824 90377461 -33698711 - L1Md_F2 LINE L1 0 6582 5953 6 1274 470 168 99 0 chr9 90377463 90377564 -33698608 - Lx9 LINE L1 -158 7486 7376 6 1274 2266 284 37 17 chr9 90377860 90378473 -33697699 - Lx6 LINE L1 -501 5379 4763 6 1274 540 0 0 0 chr9 90378473 90378533 -33697639 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1274 2266 284 37 17 chr9 90378533 90378793 -33697379 - Lx6 LINE L1 -1118 4762 4491 6 1274 244 169 155 0 chr9 90378789 90378860 -33697312 - Lx9 LINE L1 -1410 6234 6153 6 1274 3079 193 22 3 chr9 90378852 90379449 -33696723 - Lx4B LINE L1 -309 6749 6142 6 1274 236 330 11 0 chr9 90379449 90379537 -33696635 - Lx8 LINE L1 -959 6514 6426 6 1274 254 325 102 8 chr9 90380121 90380248 -33695924 + MER5A DNA MER1_type 26 164 -25 6 1274 236 372 60 72 chr9 90380277 90380512 -33695660 + MIR SINE MIR 5 236 -26 6 1274 2992 81 2 8 chr9 90380689 90381087 -33695085 - MTA_Mm LTR MaLR 0 396 1 6 1274 1183 282 69 61 chr9 90381797 90382205 -33693967 - Lx6 LINE L1 -26 7434 7024 6 1274 404 19 19 0 chr9 90383066 90383119 -33693053 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1274 1081 181 103 63 chr9 90383249 90383550 -33692622 + RLTR20C LTR ERVK 1 313 -221 6 1274 560 253 6 110 chr9 90383541 90383723 -33692449 + RLTR20C LTR ERVK 416 578 0 6 1274 241 352 53 30 chr9 90383897 90384029 -33692143 + ORR1D2 LTR MaLR 6 140 -230 6 1274 2902 205 28 18 chr9 90386021 90386567 -33689605 + Lx5 LINE L1 6460 7010 -40 6 1274 249 279 0 0 chr9 90386996 90387075 -33689097 + GA-rich Low_complexity Low_complexity 6 84 0 6 1274 352 273 0 83 chr9 90387228 90387324 -33688848 + B3A SINE B2 2 89 -109 6 1274 623 203 101 0 chr9 90387348 90387486 -33688686 - RLTR25A LTR ERVK -1 1102 951 6 1274 1121 172 48 62 chr9 90387699 90387991 -33688181 - RLTR25A LTR ERVK -133 970 683 6 1274 6439 154 13 6 chr9 90387993 90389466 -33686706 - Lx LINE L1 -3 6651 5177 6 1274 3874 159 23 38 chr9 90389466 90390154 -33686018 - RLTR25A LTR ERVK -425 678 1 6 1274 309 386 75 19 chr9 90390687 90390848 -33685324 + LTR33A LTR ERVL 234 403 -117 6 1274 7778 149 12 9 chr9 90391196 90392704 -33683468 - L1_Mur3 LINE L1 -1204 4676 3165 6 1274 30688 79 14 3 chr9 90392708 90397875 -33678297 + L1Md_F2 LINE L1 358 5586 -297 6 1274 6869 79 40 5 chr9 90397875 90398838 -33677334 + L1Md_F2 LINE L1 5587 6582 0 6 1274 3934 147 31 47 chr9 90398881 90399746 -33676426 - L1_Mur3 LINE L1 -2734 3146 2296 6 1274 487 0 0 0 chr9 90399845 90399908 -33676264 - L1Md_A LINE L1 0 6582 6520 6 1274 1056 142 0 38 chr9 90399908 90400120 -33676052 - L1_Mur3 LINE L1 -4378 1502 1299 6 1274 1481 259 91 7 chr9 90400103 90400674 -33675498 - L1_Mur3 LINE L1 -6570 1158 540 6 1274 27 49 0 0 chr9 90401372 90401413 -33674759 + AT_rich Low_complexity Low_complexity 1 41 0 6 1274 15022 95 13 6 chr9 90402517 90405626 -33670546 - L1VL4 LINE L1 -400 3159 29 6 1274 376 304 36 89 chr9 90405727 90405785 -33670387 - B3 SINE B2 0 216 164 6 1274 378 0 0 0 chr9 90405785 90405827 -33670345 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1274 376 304 36 89 chr9 90405827 90405871 -33670301 - B3 SINE B2 -53 163 5 6 1274 398 333 25 8 chr9 90405871 90405992 -33670180 - B4A SINE B4 -165 127 5 6 1274 1379 299 66 4 chr9 90407412 90407866 -33668306 + Lx8 LINE L1 6248 6729 -744 6 1274 188 137 0 19 chr9 90407893 90407945 -33668227 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1274 465 99 0 0 chr9 90407940 90408021 -33668151 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1274 302 161 0 11 chr9 90408016 90408110 -33668062 + (TA)n Simple_repeat Simple_repeat 2 94 0 6 1274 249 18 0 153 chr9 90408113 90408244 -33667928 + (CTATA)n Simple_repeat Simple_repeat 1 111 0 6 1274 600 14 0 0 chr9 90408247 90408316 -33667856 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 6 1274 1778 289 59 10 chr9 90408332 90408839 -33667333 + Lx6 LINE L1 6917 7448 -12 6 1274 258 132 132 0 chr9 90409224 90409292 -33666880 + Lx9 LINE L1 7561 7637 -7 6 1274 22 35 0 0 chr9 90409298 90409327 -33666845 + AT_rich Low_complexity Low_complexity 1 29 0 6 1274 655 187 30 0 chr9 90409422 90409556 -33666616 + Lx9 LINE L1 7176 7313 -331 6 1274 2811 275 72 54 chr9 90409548 90409738 -33666434 + Lx8 LINE L1 6212 6393 -1080 6 1274 944 238 28 9 chr9 90409738 90409950 -33666222 + B3 SINE B2 1 216 0 6 1274 2811 275 72 54 chr9 90409950 90410815 -33665357 + Lx8 LINE L1 6394 7286 -187 6 1274 746 158 0 0 chr9 90410967 90411087 -33665085 + MTC LTR MaLR 1 120 -301 6 1274 4262 68 2 2 chr9 90411131 90411680 -33664492 - L1_Mus2 LINE L1 0 6566 6018 6 1274 290 171 211 14 chr9 90411722 90411793 -33664379 + MTC LTR MaLR 124 208 -213 6 1274 2193 126 14 0 chr9 90411793 90412141 -33664031 - Lx2 LINE L1 -324 6673 6321 6 1274 1958 101 32 7 chr9 90412148 90412456 -33663716 + Lx LINE L1 6338 6653 -1 6 1274 1373 174 0 4 chr9 90412456 90412681 -33663491 + MTC LTR MaLR 198 421 0 6 1274 26 0 0 0 chr9 90413596 90413622 -33662550 + AT_rich Low_complexity Low_complexity 1 26 0 6 1274 488 303 86 50 chr9 90414156 90414378 -33661794 - MLT1C LTR MaLR -12 455 226 6 1274 245 239 195 0 chr9 90415362 90415475 -33660697 + MamRep434 DNA TcMar 118 252 -174 6 1274 486 0 0 0 chr9 90415654 90415708 -33660464 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1274 21 0 0 0 chr9 90415840 90415861 -33660311 + AT_rich Low_complexity Low_complexity 1 21 0 6 1274 23 0 0 0 chr9 90417537 90417560 -33658612 + AT_rich Low_complexity Low_complexity 1 23 0 6 1274 198 0 0 0 chr9 90418080 90418102 -33658070 + (GA)n Simple_repeat Simple_repeat 1 22 0 6 1274 180 97 0 0 chr9 90418335 90418366 -33657806 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1274 892 219 42 33 chr9 90418375 90418588 -33657584 + B3 SINE B2 2 216 0 6 1274 21 0 0 0 chr9 90418590 90418611 -33657561 + AT_rich Low_complexity Low_complexity 1 21 0 6 1274 1680 152 44 71 chr9 90419331 90419741 -33656431 - MTB_Mm LTR MaLR -8 399 1 6 1274 28 48 0 0 chr9 90419909 90419951 -33656221 + AT_rich Low_complexity Low_complexity 1 42 0 6 1274 189 0 0 0 chr9 90420128 90420149 -33656023 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 6 1274 267 31 0 0 chr9 90420405 90420437 -33655735 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 1274 635 284 169 5 chr9 90420438 90420867 -33655305 - Lx8 LINE L1 -9 7464 6966 6 1274 1363 281 25 20 chr9 90420864 90421311 -33654861 - Lx8 LINE L1 -637 6836 6388 6 1274 900 286 80 19 chr9 90421325 90421683 -33654489 - MTD LTR MaLR -14 405 5 6 1274 499 304 108 58 chr9 90421686 90421927 -33654245 - Lx8 LINE L1 -1081 6392 6140 6 1274 21 0 0 0 chr9 90422061 90422082 -33654090 + AT_rich Low_complexity Low_complexity 1 21 0 6 1274 475 146 61 20 chr9 90422120 90422218 -33653954 + ORR1D1-int LTR MaLR 1269 1370 0 6 1274 1233 241 38 54 chr9 90422219 90422535 -33653637 + ORR1D1 LTR MaLR 5 315 -59 6 1274 556 329 118 14 chr9 90422971 90423267 -33652905 - ORR1E LTR MaLR -6 353 27 6 1274 1147 116 27 22 chr9 90423312 90423497 -33652675 - B2_Mm2 SINE B2 -9 186 1 6 1274 22 0 0 0 chr9 90423509 90423531 -33652641 + AT_rich Low_complexity Low_complexity 1 22 0 6 1274 280 388 72 52 chr9 90423810 90424003 -33652169 - LTR33 LTR ERVL -293 222 26 6 1274 21 0 0 0 chr9 90424015 90424036 -33652136 + AT_rich Low_complexity Low_complexity 1 21 0 6 1274 2376 28 7 7 chr9 90424036 90424327 -33651845 - L1Md_F3 LINE L1 -2 6582 6292 7 1274 3030 227 81 35 chr9 90425910 90426012 -33650160 + Lx7 LINE L1 6117 6195 -1501 7 1274 468 0 0 0 chr9 90426012 90426064 -33650108 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1274 3030 227 81 35 chr9 90426064 90426760 -33649412 + Lx7 LINE L1 6196 6952 -744 7 1274 463 267 96 0 chr9 90426840 90426975 -33649197 - RMER15 LTR ERVL -14 561 414 7 1274 180 319 110 0 chr9 90427523 90427614 -33648558 - L2c LINE L2 -31 3356 3256 7 1274 451 230 12 0 chr9 90427920 90428085 -33648087 - Lx9 LINE L1 -20 7624 7458 7 1274 317 265 20 0 chr9 90428086 90428184 -33647988 + (CA)n Simple_repeat Simple_repeat 2 101 0 7 1274 4118 216 19 25 chr9 90428184 90429158 -33647014 - Lx9 LINE L1 -128 7516 6549 7 1274 4140 52 2 4 chr9 90429158 90429662 -33646510 - RLTR1C LTR ERV1 0 503 1 7 1274 13700 80 44 55 chr9 90429662 90431885 -33644287 - MMVL30-int LTR ERV1 0 3698 1501 7 1274 639 118 58 125 chr9 90432145 90432426 -33643746 - MMVL30-int LTR ERV1 -2187 1511 960 7 1274 4726 89 0 9 chr9 90432513 90433201 -33642971 - MMVL30-int LTR ERV1 -2245 1453 772 7 1274 234 105 0 0 chr9 90433480 90433518 -33642654 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 7 1274 2024 166 97 82 chr9 90433555 90434080 -33642092 - MMVL30-int LTR ERV1 -7023 533 1 7 1274 3970 54 6 4 chr9 90434080 90434582 -33641590 - RLTR1C LTR ERV1 0 503 1 7 1274 1030 254 131 31 chr9 90434583 90435199 -33640973 - Lx9 LINE L1 -1093 6551 5764 7 1274 282 171 5 124 chr9 90435313 90435514 -33640658 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 7 1274 23 0 0 0 chr9 90435514 90435537 -33640635 + AT_rich Low_complexity Low_complexity 1 23 0 7 1274 1353 212 33 83 chr9 90435553 90435688 -33640484 - Lx9 LINE L1 -591 5289 5123 7 1274 2868 151 116 21 chr9 90435688 90436318 -33639854 + RMER6C LTR ERVK 1 690 0 7 1274 1353 193 30 88 chr9 90436318 90436651 -33639521 - Lx9 LINE L1 -725 5155 4830 7 1274 2128 72 52 70 chr9 90436938 90437268 -33638904 - ORR1A2 LTR MaLR -3 324 1 7 1274 845 312 142 23 chr9 90438140 90438613 -33637559 - MER89 LTR ERV1 -8 551 23 7 1274 746 109 7 52 chr9 90439001 90439136 -33637036 - MT2C_Mm LTR ERVL -78 397 269 7 1274 534 202 0 16 chr9 90439140 90439266 -33636906 - Lx9 LINE L1 -1030 4817 4694 7 1274 501 17 0 0 chr9 90439272 90439330 -33636842 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1274 360 43 0 0 chr9 90439351 90439397 -33636775 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1274 23 54 0 0 chr9 90439551 90439588 -33636584 + AT_rich Low_complexity Low_complexity 1 37 0 7 1275 288 70 0 0 chr9 90439793 90439836 -33636336 + (CCAA)n Simple_repeat Simple_repeat 4 46 0 7 1275 281 259 0 33 chr9 90440057 90440117 -33636055 - MER81 DNA AcHobo -33 81 24 7 1275 471 35 0 0 chr9 90440127 90440184 -33635988 + (CAAGC)n Simple_repeat Simple_repeat 2 58 0 7 1275 200 128 26 0 chr9 90440184 90440223 -33635949 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 7 1275 1706 213 22 11 chr9 90440545 90440911 -33635261 + ORR1D2 LTR MaLR 1 370 0 7 1275 26 0 0 0 chr9 90441105 90441131 -33635041 + AT_rich Low_complexity Low_complexity 1 26 0 7 1275 216 350 70 0 chr9 90442438 90442538 -33633634 - L2a LINE L2 0 3426 3320 7 1275 2080 220 23 5 chr9 90443109 90443543 -33632629 - Lx6 LINE L1 -18 7442 7001 7 1275 285 135 0 0 chr9 90443725 90443777 -33632395 + (T)n Simple_repeat Simple_repeat 1 52 0 7 1275 1054 41 20 7 chr9 90443778 90443925 -33632247 + L1Md_F2 LINE L1 6433 6581 -1 7 1275 4859 69 2 0 chr9 90443925 90444548 -33631624 - L1_Mus1 LINE L1 -4 6563 5940 7 1275 9143 105 25 0 chr9 90444554 90445977 -33630195 + L1_Mus1 LINE L1 4482 5929 -638 7 1275 523 285 117 8 chr9 90446118 90446366 -33629806 + Lx8 LINE L1 7199 7473 0 7 1275 2886 80 3 0 chr9 90447157 90447543 -33628629 - L1_Mus1 LINE L1 0 6567 6181 7 1275 1062 59 0 0 chr9 90447544 90447679 -33628493 - B1_Mus1 SINE Alu -12 136 2 7 1275 2713 131 18 42 chr9 90447691 90448186 -33627986 - Lx LINE L1 -1 6653 6171 7 1275 854 120 60 0 chr9 90448193 90448326 -33627846 - Lx9 LINE L1 -453 7191 7051 7 1275 21 0 0 0 chr9 90449811 90449832 -33626340 + AT_rich Low_complexity Low_complexity 1 21 0 7 1275 2685 173 106 72 chr9 90449909 90450576 -33625596 + RMER6C LTR ERVK 1 690 0 7 1275 216 0 0 0 chr9 90453319 90453343 -33622829 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1275 257 324 107 28 chr9 90453855 90454033 -33622139 + MER3 DNA MER1_type 7 198 -11 7 1275 1366 91 16 0 chr9 90454242 90454428 -33621744 + B2_Mm2 SINE B2 1 189 -6 7 1275 2701 287 63 55 chr9 90454604 90454663 -33621509 + Lx8 LINE L1 6455 6514 -959 7 1275 1248 27 0 0 chr9 90454663 90454811 -33621361 + (CAAAG)n Simple_repeat Simple_repeat 5 152 0 7 1275 2701 287 63 55 chr9 90454811 90455741 -33620431 + Lx8 LINE L1 6515 7452 -21 7 1275 690 285 29 62 chr9 90456420 90456693 -33619479 + RMER15 LTR ERVL 310 573 -2 7 1275 13006 47 1 2 chr9 90456863 90459166 -33617006 - L1Md_F2 LINE L1 -2 6580 4281 7 1275 704 273 91 44 chr9 90460935 90461206 -33614966 + ORR1E LTR MaLR 66 359 0 7 1275 404 329 53 77 chr9 90461630 90461877 -33614295 - MLT1C LTR MaLR -225 242 2 7 1275 324 0 0 0 chr9 90462027 90462063 -33614109 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1275 635 131 14 0 chr9 90462090 90462235 -33613937 + (CAGA)n Simple_repeat Simple_repeat 2 148 0 7 1275 1602 208 35 6 chr9 90462288 90462626 -33613546 + Lx4B LINE L1 6036 6383 -675 7 1275 783 200 66 12 chr9 90462629 90462796 -33613376 + Lx4B LINE L1 6862 7037 -21 7 1275 252 0 0 0 chr9 90462796 90462824 -33613348 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 7 1275 1649 102 57 25 chr9 90463041 90463089 -33613083 - L1_Mus3 LINE L1 0 6638 6613 7 1275 1142 68 0 0 chr9 90463089 90463236 -33612936 - B1_Mus2 SINE Alu 0 147 1 7 1275 1649 102 57 25 chr9 90463236 90463495 -33612677 - L1_Mus3 LINE L1 -26 6612 6349 7 1275 619 93 0 0 chr9 90463497 90463583 -33612589 + L1_Mus3 LINE L1 6232 6317 -319 7 1275 221 283 0 21 chr9 90463664 90463711 -33612461 + ID4_ SINE ID 8 53 -30 7 1275 284 191 0 0 chr9 90464179 90464226 -33611946 - tRNA-Val-GTG tRNA tRNA -29 47 1 7 1275 183 286 71 0 chr9 90464230 90464300 -33611872 + MIRb SINE MIR 126 200 -68 7 1275 1778 257 27 55 chr9 90464730 90465278 -33610894 - MT2A LTR ERVL 0 533 1 7 1275 567 294 15 65 chr9 90466388 90466430 -33609742 - Lx8 LINE L1 -584 6889 6854 7 1275 1810 157 13 13 chr9 90466430 90466747 -33609425 - Lx2B LINE L1 -2 6998 6682 7 1275 567 294 15 65 chr9 90466747 90466904 -33609268 - Lx8 LINE L1 -620 6853 6700 7 1275 937 268 96 10 chr9 90466942 90467244 -33608928 - ORR1D1 LTR MaLR -45 329 2 7 1275 632 322 80 17 chr9 90467279 90467567 -33608605 + MT2A LTR ERVL 228 533 0 7 1275 1683 177 134 54 chr9 90467873 90468262 -33607910 - MTC LTR MaLR 0 421 2 7 1275 222 37 0 0 chr9 90468337 90468364 -33607808 + (CAA)n Simple_repeat Simple_repeat 2 28 0 7 1275 691 332 48 6 chr9 90468382 90468694 -33607478 + ERVL-B4-int LTR ERVL 590 914 -4847 7 1275 1423 329 30 28 chr9 90468714 90469486 -33606686 + ERVL-B4-int LTR ERVL 1131 1846 -3868 7 1275 228 300 56 14 chr9 90469743 90469814 -33606358 + B3A SINE B2 69 142 -56 7 1275 651 226 27 20 chr9 90469823 90469972 -33606200 + L1_Rod LINE L1 5561 5710 -137 7 1275 3056 66 15 2 chr9 90470240 90470633 -33605539 + MTB LTR MaLR 3 400 0 7 1275 42 0 0 0 chr9 90470659 90470701 -33605471 + AT_rich Low_complexity Low_complexity 1 42 0 7 1275 1012 225 124 72 chr9 90470743 90471074 -33605098 + ORR1C2 LTR MaLR 35 382 -2 7 1275 211 225 0 0 chr9 90471137 90471177 -33604995 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 7 1275 2205 302 105 26 chr9 90471188 90472182 -33603990 + Lx9 LINE L1 6263 7334 -310 7 1275 203 213 13 0 chr9 90472603 90472678 -33603494 + CT-rich Low_complexity Low_complexity 3 78 0 7 1275 414 39 0 0 chr9 90472699 90472751 -33603421 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1275 3499 130 7 11 chr9 90472752 90473304 -33602868 - Lx4A LINE L1 -9 7049 6500 7 1275 5843 79 4 1 chr9 90473310 90474073 -33602099 - L1_Mus1 LINE L1 0 6567 5803 7 1275 4313 130 14 28 chr9 90474073 90474791 -33601381 - Lx4A LINE L1 -568 6490 5783 7 1275 7489 45 3 1 chr9 90474787 90475706 -33600466 - L1Md_F2 LINE L1 0 6582 5662 7 1275 9498 66 0 1 chr9 90475705 90476916 -33599256 + L1Md_F2 LINE L1 4436 5645 -238 7 1275 4510 120 50 0 chr9 90476914 90477613 -33598559 - Lx4A LINE L1 -86 5791 5058 7 1275 721 234 140 0 chr9 90477656 90477870 -33598302 + Lx9 LINE L1 7330 7573 -71 7 1275 1112 49 0 53 chr9 90477955 90478107 -33598065 - B1_Mus1 SINE Alu 0 148 5 7 1275 698 229 11 105 chr9 90478341 90478531 -33597641 + ORR1C2 LTR MaLR 5 176 -198 7 1275 249 120 52 26 chr9 90478542 90478619 -33597553 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 7 1275 978 194 54 72 chr9 90478627 90478849 -33597323 + ORR1C2 LTR MaLR 167 384 0 7 1275 1040 306 56 34 chr9 90478852 90479394 -33596778 + ERVL-B4-int LTR ERVL 2128 2760 -3001 7 1275 34039 69 3 0 chr9 90479502 90484675 -33591497 + L1Md_F3 LINE L1 440 5586 -297 7 1275 8227 39 2 1 chr9 90484676 90485669 -33590503 + L1Md_F3 LINE L1 5588 6581 -3 7 1275 260 321 0 0 chr9 90485671 90485752 -33590420 + ERVL-B4-int LTR ERVL 2797 2877 -2608 7 1275 1030 269 149 22 chr9 90485784 90486103 -33590069 + MTD LTR MaLR 5 371 -48 7 1275 1914 208 8 0 chr9 90486103 90486478 -33589694 + ORR1C1 LTR MaLR 1 378 0 7 1275 1030 269 149 22 chr9 90486478 90486526 -33589646 + MTD LTR MaLR 372 419 0 7 1275 1180 282 86 35 chr9 90486539 90487002 -33589170 + Lx8 LINE L1 6968 7454 -19 7 1275 2662 326 65 33 chr9 90488385 90489693 -33586479 - Lx8 LINE L1 -36 7437 6088 7 1275 244 195 74 88 chr9 90489828 90489954 -33586218 - Lx9 LINE L1 -1566 5894 5774 7 1275 2935 149 142 0 chr9 90490175 90490509 -33585663 - RMER6D LTR ERVK -4 716 329 7 1275 486 0 0 0 chr9 90490509 90490563 -33585609 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1275 2935 149 142 0 chr9 90490563 90490785 -33585387 - RMER6D LTR ERVK -392 328 82 7 1275 319 195 31 0 chr9 90493471 90493555 -33582617 - Lx9 LINE L1 -571 5309 5223 7 1275 1736 109 0 22 chr9 90493556 90493822 -33582350 - Lx9 LINE L1 -791 5092 4833 7 1275 3863 133 48 3 chr9 90493822 90494461 -33581711 + L1_Mus3 LINE L1 5971 6638 0 7 1275 1331 61 0 6 chr9 90494467 90494565 -33581607 + (GAA)n Simple_repeat Simple_repeat 1 98 0 7 1275 1137 128 0 0 chr9 90494565 90494745 -33581427 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1275 1331 61 0 6 chr9 90494745 90494827 -33581345 + (GAA)n Simple_repeat Simple_repeat 3 83 0 7 1275 681 292 102 40 chr9 90495634 90495987 -33580185 - MTEa LTR MaLR 0 379 5 7 1275 1043 134 202 5 chr9 90496376 90496564 -33579608 + URR1A DNA MER1_type 2 226 0 7 1275 632 298 123 8 chr9 90496638 90496997 -33579175 + Helitron1Na_Mam RC Helitron 629 1028 -34 7 1275 364 300 25 8 chr9 90497248 90497369 -33578803 + L2a LINE L2 3304 3426 0 7 1275 655 203 139 10 chr9 90497475 90497669 -33578503 - RMER1C Other Other -38 1304 1086 7 1275 411 337 90 9 chr9 90497796 90498043 -33578129 + L1M4 LINE L1 2227 2492 -3651 7 1275 761 294 53 55 chr9 90499030 90499357 -33576815 - MLT1E3 LTR MaLR -6 621 288 7 1275 618 237 93 25 chr9 90499382 90499618 -33576554 - ORR1C2 LTR MaLR 0 384 121 7 1275 1101 300 53 15 chr9 90499619 90499961 -33576211 + Lx6 LINE L1 6941 7295 -165 7 1275 672 201 53 20 chr9 90500132 90500284 -33575888 + Lx6 LINE L1 7293 7449 -11 1 1275 3408 282 109 35 chr9 90500318 90501864 -33574308 + Lx9 LINE L1 5819 7643 -1 2 1275 1254 215 63 125 chr9 90502296 90502695 -33573477 - ORR1D1 LTR MaLR 0 374 1 3 1275 269 344 156 0 chr9 90502699 90502879 -33573293 - MIR SINE MIR -7 255 48 4 1275 23 0 0 0 chr9 90502910 90502933 -33573239 + AT_rich Low_complexity Low_complexity 1 23 0 5 1275 7552 65 8 2 chr9 90503673 90504639 -33571533 - L1Md_F2 LINE L1 -14 6568 5597 6 1275 3977 89 2 2 chr9 90504637 90505176 -33570996 + L1Md_F2 LINE L1 5046 5584 -299 6 1275 22 56 0 0 chr9 90505503 90505539 -33570633 + AT_rich Low_complexity Low_complexity 1 36 0 7 1275 28 61 0 0 chr9 90505604 90505653 -33570519 + AT_rich Low_complexity Low_complexity 1 49 0 8 1275 1152 69 0 0 chr9 90505838 90505983 -33570189 - B1_Mm SINE Alu -2 145 1 9 1275 826 278 33 5 chr9 90506117 90506327 -33569845 - MTE2b LTR MaLR -159 220 5 1 1275 212 320 68 29 chr9 90506496 90506599 -33569573 + MER5A DNA MER1_type 17 123 -66 1 1275 460 304 76 0 chr9 90507044 90507307 -33568865 + L1M5 LINE L1 4983 5265 -881 1 1275 227 278 84 47 chr9 90507313 90507427 -33568745 + B1F SINE Alu 10 99 -50 1 1275 207 0 0 0 chr9 90507577 90507600 -33568572 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1275 1149 75 0 0 chr9 90507604 90507751 -33568421 - B1_Mm SINE Alu 0 147 1 1 1275 474 211 0 0 chr9 90507940 90508049 -33568123 + (TG)n Simple_repeat Simple_repeat 2 110 0 1 1275 758 209 0 7 chr9 90508181 90508321 -33567851 + B1_Mur1 SINE Alu 3 141 -8 1 1275 297 0 0 0 chr9 90508835 90508868 -33567304 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1275 791 335 36 60 chr9 90508885 90509218 -33566954 - MTEa LTR MaLR -3 376 52 1 1275 326 286 0 42 chr9 90509217 90509312 -33566860 - MTEa LTR MaLR -286 93 3 1 1275 1161 142 112 0 chr9 90509446 90509643 -33566529 - URR1A DNA MER1_type -7 219 1 2 1275 798 352 122 42 chr9 90510130 90511074 -33565098 + L2a LINE L2 2377 3404 -22 2 1275 211 368 0 0 chr9 90511161 90511248 -33564924 + L2a LINE L2 3338 3424 -2 2 1275 244 405 71 19 chr9 90512230 90512497 -33563675 + L2b LINE L2 3095 3375 0 2 1275 903 265 85 8 chr9 90514387 90514634 -33561538 - MTD LTR MaLR -2 417 152 2 1275 668 276 37 59 chr9 90514689 90514959 -33561213 + Lx7 LINE L1 5608 5871 -1825 2 1275 808 78 0 0 chr9 90515306 90515421 -33560751 - L1_Mus2 LINE L1 -1 6565 6451 2 1275 662 221 41 0 chr9 90515814 90515959 -33560213 - B3 SINE B2 -1 215 65 2 1275 343 347 35 29 chr9 90517047 90517219 -33558953 + L2b LINE L2 2648 2820 -599 2 1275 183 250 42 0 chr9 90517918 90517966 -33558206 + L2b LINE L2 2958 3007 -368 2 1275 1503 169 8 0 chr9 90518101 90518338 -33557834 + RLTR17 LTR ERVK 190 428 -264 2 1275 3446 185 44 77 chr9 90518338 90519268 -33556904 + RMER3D-int LTR ERVK 1418 2316 -526 3 1275 1128 49 0 0 chr9 90519268 90519410 -33556762 - Lx3_Mus LINE L1 -206 6803 6662 3 1275 590 79 0 11 chr9 90519584 90519674 -33556498 + (GGA)n Simple_repeat Simple_repeat 3 91 0 3 1275 1403 273 25 3 chr9 90520031 90520398 -33555774 - Lx7 LINE L1 -1242 6454 6080 3 1275 24 32 0 0 chr9 90520647 90520678 -33555494 + AT_rich Low_complexity Low_complexity 1 31 0 3 1275 620 231 56 56 chr9 90522321 90522518 -33553654 + B3A SINE B2 2 198 0 3 1275 1246 161 32 0 chr9 90522680 90522898 -33553274 - URR1B DNA MER1_type 0 225 1 3 1275 562 306 143 0 chr9 90523072 90523219 -33552953 - B3 SINE B2 -25 191 24 3 1275 435 38 0 0 chr9 90523281 90523334 -33552838 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1275 915 258 96 88 chr9 90523730 90524228 -33551944 - RLTR40 LTR ERVK -80 737 236 3 1275 3746 46 0 0 chr9 90524228 90524682 -33551490 + L1Md_F2 LINE L1 5133 5586 -297 4 1275 8069 48 2 0 chr9 90524682 90525664 -33550508 + L1Md_F2 LINE L1 5587 6570 -12 4 1275 944 188 21 47 chr9 90525665 90525900 -33550272 - RLTR40 LTR ERVK -570 247 19 3 1275 359 215 149 0 chr9 90525932 90526039 -33550133 - L1MA9 LINE L1 -376 5936 5814 4 1275 1978 304 75 1 chr9 90526087 90526798 -33549374 - Lx8 LINE L1 -355 7118 6356 4 1275 301 143 0 0 chr9 90526820 90526883 -33549289 - L1_Mus3 LINE L1 -1 6637 6575 4 1275 1105 293 10 10 chr9 90526892 90527302 -33548870 - L1_Mur3 LINE L1 -1523 4357 3948 4 1275 594 258 141 0 chr9 90527303 90527516 -33548656 - L1_Mur3 LINE L1 -1767 4113 3871 4 1275 4158 177 53 11 chr9 90527562 90528373 -33547799 + Lx2B LINE L1 5633 6477 -523 4 1275 1208 293 55 40 chr9 90528393 90528426 -33547746 - L1_Mur3 LINE L1 -2524 3356 3329 4 1275 1360 72 11 0 chr9 90528426 90528606 -33547566 - L1_Mus2 LINE L1 0 6566 6385 4 1275 1208 293 55 40 chr9 90528606 90529263 -33546909 - L1_Mur3 LINE L1 -2552 3328 2656 4 1275 1274 278 31 10 chr9 90529262 90529771 -33546401 - L1_Mur3 LINE L1 -4083 1797 1278 4 1275 1068 216 33 0 chr9 90529829 90530042 -33546130 - ORR1D1-int LTR MaLR -1150 220 1 4 1275 1660 212 59 3 chr9 90530042 90530396 -33545776 - ORR1D1 LTR MaLR 0 374 1 4 1275 4251 232 41 12 chr9 90530443 90531386 -33544786 - MERVL_2A-int LTR ERVL -1889 3872 2902 4 1275 1643 209 48 0 chr9 90531846 90532176 -33543996 - MERVL_2A-int LTR ERVL -2874 2887 2542 4 1275 185 294 20 0 chr9 90532182 90532233 -33543939 - L3 LINE CR1 -2438 2051 2000 5 1275 536 179 128 16 chr9 90532233 90532358 -33543814 - MERVL_2A-int LTR ERVL -3283 2478 2340 4 1275 404 304 36 69 chr9 90532362 90532633 -33543539 + MTEb LTR MaLR 106 367 -12 5 1275 3929 217 49 100 chr9 90534158 90535230 -33540942 - RMER1B Other Other -3 1063 46 5 1275 207 0 0 0 chr9 90535280 90535303 -33540869 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1275 309 268 0 0 chr9 90535333 90535404 -33540768 - MTC LTR MaLR -350 71 1 5 1275 242 208 0 0 chr9 90536611 90536664 -33539508 + CT-rich Low_complexity Low_complexity 1 53 0 5 1275 480 35 0 0 chr9 90536840 90536898 -33539274 + (TATG)n Simple_repeat Simple_repeat 3 60 0 5 1275 181 57 28 28 chr9 90537377 90537413 -33538759 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 5 1275 763 187 12 0 chr9 90538419 90538590 -33537582 + GA-rich Low_complexity Low_complexity 2 174 0 5 1275 438 210 102 31 chr9 90539890 90540018 -33536154 + Lx5 LINE L1 4143 4279 -1598 5 1275 212 77 0 25 chr9 90540041 90540081 -33536091 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 6 1275 4232 163 32 20 chr9 90540110 90540434 -33535738 + Lx5 LINE L1 4278 4623 -1254 5 1275 203 0 37 0 chr9 90540434 90540461 -33535711 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1275 4232 163 32 20 chr9 90540461 90540981 -33535191 + Lx5 LINE L1 4624 5132 -745 5 1275 34914 69 6 2 chr9 90541000 90547301 -33528871 - L1Md_F2 LINE L1 0 6582 254 6 1275 6221 193 51 32 chr9 90547304 90549149 -33527023 + Lx5 LINE L1 5127 7044 -6 5 1275 228 100 0 0 chr9 90549206 90549246 -33526926 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 1275 2347 209 38 4 chr9 90549489 90549984 -33526188 + RMER5 LTR ERV1 15 526 -8 6 1275 1223 70 4 0 chr9 90550036 90550281 -33525891 + (GAGAA)n Simple_repeat Simple_repeat 1 246 0 6 1275 221 30 61 0 chr9 90550298 90550331 -33525841 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 6 1275 570 250 0 16 chr9 90551020 90551146 -33525026 - B1_Mur3 SINE Alu -21 128 5 6 1275 566 334 23 140 chr9 90551547 90551940 -33524232 + RLTR23 LTR ERV1 8 354 -76 6 1275 319 273 37 83 chr9 90552141 90552249 -33523923 + PB1D10 SINE Alu 16 118 -196 6 1275 195 222 0 0 chr9 90552975 90553020 -33523152 + CT-rich Low_complexity Low_complexity 1 45 0 7 1275 25 51 0 0 chr9 90554305 90554344 -33521828 + AT_rich Low_complexity Low_complexity 1 39 0 7 1275 1822 267 89 16 chr9 90554450 90555014 -33521158 - Lx7 LINE L1 -337 7359 6755 7 1275 1451 92 88 0 chr9 90555061 90555278 -33520894 - ORR1A2 LTR MaLR 0 327 92 7 1275 2319 261 65 34 chr9 90555300 90555650 -33520522 - L1_Rod LINE L1 -1834 4013 3663 7 1275 387 0 0 0 chr9 90555650 90555693 -33520479 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1275 2319 261 65 34 chr9 90555693 90556275 -33519897 - L1_Rod LINE L1 -2185 3662 3053 7 1275 947 285 73 60 chr9 90556277 90556646 -33519526 + RLTR14 LTR ERV1 1 374 -8 7 1275 18126 80 5 17 chr9 90556687 90558539 -33517633 - MusHAL1 LINE L1 -3 2709 893 7 1275 3029 158 120 139 chr9 90558539 90559459 -33516713 + RMER17A2 LTR ERVK 1 902 -4 7 1275 18126 80 5 17 chr9 90559459 90560252 -33515920 - MusHAL1 LINE L1 -1820 892 97 7 1275 375 240 29 156 chr9 90560248 90560421 -33515751 - L1VL1 LINE L1 -6060 362 212 7 1275 2020 242 49 22 chr9 90560421 90561050 -33515122 - L1_Rod LINE L1 -4463 1384 743 7 1275 2490 116 72 3 chr9 90561154 90561543 -33514629 + Lx2 LINE L1 6574 6989 -8 8 1275 1658 135 14 4 chr9 90561544 90561819 -33514353 + Lx2 LINE L1 6687 6964 -33 8 1275 252 301 0 27 chr9 90561818 90561893 -33514279 - L1_Rod LINE L1 -7030 578 506 7 1275 218 218 18 18 chr9 90562210 90562266 -33513906 + GA-rich Low_complexity Low_complexity 4 59 0 8 1275 201 121 0 0 chr9 90562624 90562657 -33513515 + (TA)n Simple_repeat Simple_repeat 1 33 0 8 1275 287 322 47 27 chr9 90563918 90564068 -33512104 + L2a LINE L2 3271 3423 -3 8 1275 2161 246 52 8 chr9 90564685 90565275 -33510897 - Lx9 LINE L1 0 7644 7029 8 1275 309 258 61 10 chr9 90565365 90565463 -33510709 - MLT1E2 LTR MaLR -522 105 3 8 1275 348 313 56 99 chr9 90565470 90565797 -33510375 - MLT1E2-int LTR MaLR -5 1730 1163 8 1275 338 347 0 48 chr9 90565981 90566084 -33510088 + B1F SINE Alu 1 98 -51 8 1275 1776 146 6 93 chr9 90566084 90566451 -33509721 + L1_Mur2 LINE L1 5241 5611 -563 8 1275 262 67 0 43 chr9 90566472 90566519 -33509653 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 8 1275 4030 36 10 8 chr9 90566729 90567228 -33508944 + L1Md_F2 LINE L1 6081 6580 -2 9 1275 862 258 50 119 chr9 90567669 90568047 -33508125 - MTE2a LTR MaLR 0 379 28 9 1275 531 0 0 0 chr9 90568153 90568212 -33507960 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1275 27 29 0 0 chr9 90568937 90568971 -33507201 + AT_rich Low_complexity Low_complexity 1 34 0 9 1276 245 299 0 30 chr9 90571336 90571436 -33504736 - L1M2 LINE L1 -1146 4994 4898 9 1276 371 231 87 42 chr9 90571448 90571652 -33504520 - L1M2 LINE L1 -1609 4534 4300 9 1276 250 345 112 17 chr9 90571721 90572258 -33503914 - L1_Rod LINE L1 -4033 1814 1227 9 1276 21 36 0 0 chr9 90573098 90573126 -33503046 + AT_rich Low_complexity Low_complexity 1 28 0 9 1276 204 186 0 44 chr9 90573145 90573190 -33502982 + CT-rich Low_complexity Low_complexity 5 47 0 9 1276 444 19 0 0 chr9 90573251 90573304 -33502868 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 1276 427 239 0 0 chr9 90573386 90573478 -33502694 + 4.5SRNA scRNA scRNA 2 93 -1 9 1276 1136 153 16 5 chr9 90573478 90573668 -33502504 + B2_Mm2 SINE B2 2 193 -2 1 1276 928 293 46 44 chr9 90573703 90574113 -33502059 - Lx9 LINE L1 -276 7368 6958 1 1276 227 269 143 39 chr9 90574164 90574346 -33501826 + L1M2 LINE L1 3473 3673 -2470 1 1276 216 0 0 0 chr9 90574346 90574370 -33501802 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1276 396 0 0 0 chr9 90574385 90574429 -33501743 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1276 1296 84 0 0 chr9 90574429 90574608 -33501564 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1276 1746 324 117 43 chr9 90574635 90576662 -33499510 + L1_Mur3 LINE L1 3685 5861 -19 1 1276 29 0 0 0 chr9 90577084 90577113 -33499059 + AT_rich Low_complexity Low_complexity 1 29 0 1 1276 31 0 0 0 chr9 90577161 90577192 -33498980 + AT_rich Low_complexity Low_complexity 1 31 0 1 1276 26 50 0 0 chr9 90577918 90577958 -33498214 + AT_rich Low_complexity Low_complexity 1 40 0 1 1276 26 74 0 0 chr9 90579144 90579198 -33496974 + AT_rich Low_complexity Low_complexity 1 54 0 1 1276 1728 195 107 5 chr9 90579393 90579775 -33496397 - MTC LTR MaLR 0 421 1 1 1276 890 311 179 16 chr9 90579894 90580398 -33495774 - Lx8 LINE L1 -612 6861 6276 1 1276 1760 203 141 9 chr9 90580406 90580853 -33495319 + RMER20A LTR ERVK 11 516 0 1 1276 367 397 23 0 chr9 90580915 90581046 -33495126 - B1F SINE Alu -8 141 8 1 1276 876 248 25 0 chr9 90581212 90581410 -33494762 + B3 SINE B2 2 204 -12 1 1276 202 271 0 0 chr9 90582428 90582476 -33493696 + GA-rich Low_complexity Low_complexity 3 50 0 1 1276 311 331 140 0 chr9 90582476 90582612 -33493560 + HAL1-3A_ME LINE L1 2283 2437 -421 1 1276 387 266 0 69 chr9 90583575 90583676 -33492496 - B1F SINE Alu -9 140 47 1 1276 215 336 70 9 chr9 90584845 90584959 -33491213 - MIRb SINE MIR -56 212 92 1 1276 826 92 0 8 chr9 90585698 90585830 -33490342 + Lx LINE L1 6524 6654 0 1 1276 221 57 0 28 chr9 90587497 90587533 -33488639 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1276 417 39 0 0 chr9 90587537 90587588 -33488584 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1276 387 0 0 0 chr9 90587588 90587630 -33488542 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1276 23 0 0 0 chr9 90591148 90591171 -33485001 + AT_rich Low_complexity Low_complexity 1 23 0 1 1276 465 19 0 0 chr9 90592096 90592150 -33484022 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1276 21 57 0 0 chr9 90593755 90593790 -33482382 + AT_rich Low_complexity Low_complexity 1 35 0 1 1276 180 0 0 0 chr9 90594402 90594422 -33481750 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1276 227 264 0 0 chr9 90597109 90597162 -33479010 + (TATG)n Simple_repeat Simple_repeat 3 55 0 1 1276 25 31 0 0 chr9 90599065 90599097 -33477075 + AT_rich Low_complexity Low_complexity 1 32 0 1 1276 485 252 25 25 chr9 90599511 90599629 -33476543 + PB1D9 SINE Alu 2 119 -1 1 1276 311 145 14 0 chr9 90600209 90600278 -33475894 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1 1276 21 36 0 0 chr9 90601804 90601832 -33474340 + AT_rich Low_complexity Low_complexity 1 28 0 1 1276 381 331 32 116 chr9 90602106 90602501 -33473671 + B4 SINE B4 1 292 0 1 1276 1819 149 41 3 chr9 90602508 90602825 -33473347 - ORR1A4 LTR MaLR 0 329 1 1 1276 1502 212 81 64 chr9 90602830 90603238 -33472934 - MTD LTR MaLR 0 419 5 1 1276 6180 95 51 21 chr9 90603349 90604286 -33471886 + Lx2 LINE L1 6033 6997 0 1 1276 237 271 81 100 chr9 90604295 90604455 -33471717 + B2_Mm2 SINE B2 36 192 -3 1 1276 4344 58 6 0 chr9 90604554 90605101 -33471071 + L1Md_F2 LINE L1 6030 6579 -3 1 1276 987 193 119 0 chr9 90605176 90605378 -33470794 - URR1A DNA MER1_type 0 226 1 1 1276 1052 226 54 37 chr9 90606248 90606542 -33469630 + Lx6 LINE L1 7136 7434 -26 1 1276 499 281 191 58 chr9 90606641 90606898 -33469274 + B4 SINE B4 2 292 0 1 1276 279 79 0 0 chr9 90607557 90607595 -33468577 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1276 609 146 0 0 chr9 90607595 90607732 -33468440 + (GA)n Simple_repeat Simple_repeat 2 138 0 1 1276 486 0 0 0 chr9 90607781 90607835 -33468337 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1276 456 208 0 0 chr9 90608167 90608268 -33467904 + (TATG)n Simple_repeat Simple_repeat 4 104 0 1 1276 214 358 64 35 chr9 90608314 90608485 -33467687 + MIRb SINE MIR 22 197 -71 1 1276 255 337 0 12 chr9 90608902 90608986 -33467186 - ID_B1 SINE B4 -69 155 73 1 1276 371 259 128 9 chr9 90609553 90609662 -33466510 + B4A SINE B4 169 290 -2 1 1276 645 311 15 9 chr9 90611266 90611455 -33464717 - B3A SINE B2 0 216 27 1 1276 356 188 62 0 chr9 90611470 90611566 -33464606 - Lx9 LINE L1 0 7644 7543 1 1276 252 0 0 0 chr9 90611582 90611610 -33464562 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1276 229 224 0 79 chr9 90611615 90611678 -33464494 - Lx9 LINE L1 -168 7476 7419 1 1276 234 0 0 0 chr9 90611833 90611859 -33464313 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1276 1323 194 77 4 chr9 90613416 90613690 -33462482 - Lx6 LINE L1 -306 7154 6861 1 1276 230 215 30 30 chr9 90614700 90614767 -33461405 - L1MC2 LINE L1 -208 6136 6070 1 1276 1961 116 20 7 chr9 90614891 90615187 -33460985 + L1_Mm LINE L1 5437 5736 -147 1 1276 1047 201 28 0 chr9 90615164 90615460 -33460712 + L1_Mur3 LINE L1 1140 1445 -4435 1 1276 6267 179 46 29 chr9 90615563 90617170 -33459002 - Lx2B LINE L1 -4 6996 5361 1 1276 2591 130 51 11 chr9 90617151 90617602 -33458570 + Lx2B LINE L1 4891 5359 -518 1 1276 27 29 0 0 chr9 90617630 90617664 -33458508 + AT_rich Low_complexity Low_complexity 1 34 0 1 1276 24 67 0 0 chr9 90618164 90618209 -33457963 + AT_rich Low_complexity Low_complexity 1 45 0 1 1276 805 246 25 25 chr9 90618520 90618565 -33457607 + RMER15-int LTR ERVL 959 1003 -3996 1 1276 441 0 0 0 chr9 90618565 90618614 -33457558 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1276 805 246 25 25 chr9 90618614 90618772 -33457400 + RMER15-int LTR ERVL 1004 1162 -3837 1 1276 1478 317 62 16 chr9 90618798 90619429 -33456743 + Lx8 LINE L1 6416 7075 -398 1 1276 1673 168 176 3 chr9 90619471 90619800 -33456372 - ORR1B1 LTR MaLR -8 386 1 1 1276 2248 152 18 18 chr9 90620461 90620855 -33455317 + ORR1B1 LTR MaLR 1 394 0 1 1276 485 165 171 18 chr9 90620857 90620968 -33455204 + URR1B DNA MER1_type 98 225 0 1 1276 327 304 62 117 chr9 90620969 90621226 -33454946 + MLT1B LTR MaLR 97 339 -51 1 1276 206 372 41 16 chr9 90621839 90621962 -33454210 - MIR SINE MIR -89 173 48 1 1276 2964 113 106 41 chr9 90623199 90623716 -33452456 - Lx LINE L1 -1 6653 6103 1 1276 4371 68 4 4 chr9 90624290 90624852 -33451320 + L1_Mus3 LINE L1 6076 6637 -1 1 1276 555 154 0 75 chr9 90624949 90625002 -33451170 - Lx9 LINE L1 -5 7639 7590 1 1276 1790 191 25 16 chr9 90625002 90625370 -33450802 - ORR1D1 LTR MaLR 0 374 4 1 1276 555 154 0 75 chr9 90625370 90625449 -33450723 - Lx9 LINE L1 -55 7589 7517 1 1276 303 93 0 0 chr9 90625450 90625493 -33450679 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1 1276 518 45 56 11 chr9 90627577 90627666 -33448506 + (TTTTC)n Simple_repeat Simple_repeat 2 94 0 1 1276 355 260 73 0 chr9 90628506 90628629 -33447543 + Lx6 LINE L1 7147 7278 -182 1 1276 24 0 0 0 chr9 90628715 90628739 -33447433 + AT_rich Low_complexity Low_complexity 1 24 0 1 1276 189 0 0 0 chr9 90628940 90628961 -33447211 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1276 995 95 0 0 chr9 90629503 90629640 -33446532 + B1_Mus2 SINE Alu 3 139 -8 1 1276 216 86 0 0 chr9 90629640 90629675 -33446497 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1276 768 211 14 0 chr9 90630052 90630199 -33445973 + B1_Mur2 SINE Alu 1 149 0 1 1276 868 168 6 6 chr9 90630885 90631059 -33445113 + CT-rich Low_complexity Low_complexity 4 177 0 1 1276 456 296 8 16 chr9 90631083 90631210 -33444962 - B1F SINE Alu -7 142 17 1 1276 1366 216 33 9 chr9 90631803 90632326 -33443846 - Lx9 LINE L1 -130 7514 6929 1 1276 323 325 131 10 chr9 90632553 90632752 -33443420 + MER2 DNA MER2_type 91 313 -32 1 1276 324 298 94 20 chr9 90632883 90633085 -33443087 - Charlie7 DNA MER1_type -312 2300 2084 1 1276 258 306 165 56 chr9 90633143 90633392 -33442780 - Charlie7 DNA MER1_type -2215 397 122 1 1276 577 245 33 117 chr9 90633596 90633632 -33442540 - B2_Mm2 SINE B2 0 195 163 1 1276 552 65 0 0 chr9 90633632 90633709 -33442463 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1276 902 245 33 117 chr9 90633709 90633885 -33442287 - B3A SINE B2 -26 172 1 1 1276 326 208 28 0 chr9 90633919 90633991 -33442181 + (CATA)n Simple_repeat Simple_repeat 3 76 0 1 1276 405 262 0 22 chr9 90633992 90634175 -33441997 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1276 818 160 0 6 chr9 90634164 90634334 -33441838 + (TA)n Simple_repeat Simple_repeat 1 169 0 1 1276 284 234 11 0 chr9 90634319 90634413 -33441759 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1276 468 292 18 36 chr9 90636434 90636601 -33439571 - RSINE1 SINE B4 -1 164 1 1 1276 231 292 15 15 chr9 90637114 90637180 -33438992 + ID4 SINE ID 17 82 -1 1 1276 433 276 91 86 chr9 90637241 90637326 -33438846 + MLT1B LTR MaLR 192 268 -122 1 1276 3631 70 4 0 chr9 90637326 90637795 -33438377 + L1_Mus2 LINE L1 6086 6556 -10 1 1276 693 0 0 0 chr9 90637795 90637872 -33438300 + (GAA)n Simple_repeat Simple_repeat 3 79 0 1 1276 433 276 91 86 chr9 90637872 90637983 -33438189 + MLT1B LTR MaLR 269 389 -1 1 1276 23 33 0 0 chr9 90638655 90638685 -33437487 + AT_rich Low_complexity Low_complexity 1 30 0 1 1276 1877 148 9 65 chr9 90639060 90639400 -33436772 + ORR1A4 LTR MaLR 1 321 -8 1 1276 1635 314 62 23 chr9 90640043 90640395 -33435777 - Lx8 LINE L1 -248 7225 6849 1 1276 423 0 0 0 chr9 90640395 90640442 -33435730 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1276 1635 314 62 23 chr9 90640442 90640738 -33435434 - Lx8 LINE L1 -625 6848 6553 1 1276 34 42 0 0 chr9 90640812 90640860 -33435312 + AT_rich Low_complexity Low_complexity 1 48 0 2 1276 672 13 0 0 chr9 90641096 90641173 -33434999 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1276 361 29 0 79 chr9 90641174 90641250 -33434922 + (CACAC)n Simple_repeat Simple_repeat 1 70 0 2 1276 300 377 19 43 chr9 90641578 90641739 -33434433 - LTR88c LTR Genie? -11 851 695 2 1276 409 229 0 0 chr9 90641944 90642027 -33434145 - L1_Mur3 LINE L1 -3618 2262 2180 2 1276 226 0 0 56 chr9 90642045 90642081 -33434091 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1276 225 211 0 119 chr9 90642391 90642450 -33433722 - ORR1A1-int LTR MaLR -827 965 914 2 1276 666 329 23 36 chr9 90642454 90642763 -33433409 - Lx8 LINE L1 -439 7034 6730 2 1276 238 294 15 0 chr9 90642772 90642840 -33433332 + L1_Mur3 LINE L1 745 813 -6899 2 1276 1526 184 4 22 chr9 90642868 90643145 -33433027 + Lx7 LINE L1 6815 7086 -610 2 1276 993 245 63 58 chr9 90643396 90643711 -33432461 + Lx7 LINE L1 7095 7418 -278 2 1276 351 0 0 0 chr9 90643711 90643750 -33432422 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1276 993 245 63 58 chr9 90643750 90643798 -33432374 + Lx7 LINE L1 7419 7460 -236 2 1276 230 288 0 15 chr9 90643802 90643869 -33432303 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1276 484 266 65 55 chr9 90643869 90644159 -33432013 + Lx7 LINE L1 7404 7696 0 2 1276 275 356 50 82 chr9 90645030 90645189 -33430983 - L4 LINE RTE -404 1625 1472 2 1276 5717 161 34 16 chr9 90645644 90646693 -33429479 - Lx2 LINE L1 -2 6995 5928 2 1276 306 289 32 32 chr9 90646988 90647081 -33429091 - PB1D10 SINE Alu 0 117 25 2 1276 742 260 94 34 chr9 90647596 90647863 -33428309 - B4A SINE B4 -4 288 6 2 1276 1285 261 104 18 chr9 90647937 90648323 -33427849 - MTD LTR MaLR 0 419 1 2 1276 276 244 128 0 chr9 90649376 90649462 -33426710 + RSINE1 SINE B4 57 153 -12 2 1276 22 35 0 0 chr9 90649474 90649503 -33426669 + AT_rich Low_complexity Low_complexity 1 29 0 2 1276 347 345 57 6 chr9 90649536 90649711 -33426461 - MLT1F LTR MaLR -78 470 287 2 1276 1704 151 48 7 chr9 90649745 90650038 -33426134 - Lx2 LINE L1 -4 6993 6689 2 1276 1091 60 0 32 chr9 90650299 90650487 -33425685 + L1Md_F2 LINE L1 6412 6582 0 2 1276 1087 145 5 10 chr9 90651164 90651359 -33424813 - Lx2 LINE L1 -7 6647 6454 2 1276 24 53 0 0 chr9 90652049 90652087 -33424085 + AT_rich Low_complexity Low_complexity 1 38 0 2 1276 288 53 0 0 chr9 90653179 90653217 -33422955 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1276 2329 84 0 20 chr9 90653614 90653956 -33422216 - L1Md_F2 LINE L1 -3 6579 6245 2 1276 2262 75 13 0 chr9 90653956 90654263 -33421909 + L1_Mm LINE L1 3660 3970 -1913 2 1276 213 108 0 0 chr9 90654302 90654339 -33421833 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2 1276 1784 203 66 2 chr9 90655121 90655530 -33420642 - Lx9 LINE L1 -73 7571 7137 2 1276 326 141 24 0 chr9 90655747 90655832 -33420340 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 2 1276 1891 86 0 4 chr9 90656017 90656275 -33419897 - L1_Mus2 LINE L1 0 6566 6310 2 1276 315 0 0 0 chr9 90656656 90656691 -33419481 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1276 414 0 0 0 chr9 90657348 90657394 -33418778 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1276 255 339 78 31 chr9 90657424 90657552 -33418620 - MLT1H1 LTR MaLR -361 194 61 2 1276 206 338 23 81 chr9 90657901 90657988 -33418184 - L2c LINE L2 -21 3366 3285 2 1276 22 35 0 0 chr9 90658978 90659007 -33417165 + AT_rich Low_complexity Low_complexity 1 29 0 2 1276 495 82 0 0 chr9 90659637 90659710 -33416462 + (TTTA)n Simple_repeat Simple_repeat 4 76 0 2 1276 7122 87 29 29 chr9 90659710 90660904 -33415268 - Lx3_Mus LINE L1 -1009 6000 4813 2 1276 944 232 20 23 chr9 90660909 90661178 -33414994 - Lx9 LINE L1 -544 7100 6697 2 1276 367 298 17 17 chr9 90661173 90661289 -33414883 - Lx9 LINE L1 -1170 6474 6359 2 1276 502 263 124 34 chr9 90661379 90661556 -33414616 - B3A SINE B2 -5 193 1 2 1276 182 91 30 0 chr9 90661799 90661832 -33414340 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 2 1276 1468 215 102 33 chr9 90661977 90662388 -33413784 + RLTR26 LTR ERVK 2 494 -148 2 1276 360 88 0 0 chr9 90662388 90662445 -33413727 + (CAT)n Simple_repeat Simple_repeat 3 59 0 2 1276 1468 225 140 32 chr9 90662445 90662589 -33413583 + RLTR26 LTR ERVK 495 642 0 2 1276 26 0 0 0 chr9 90663036 90663062 -33413110 + AT_rich Low_complexity Low_complexity 1 26 0 2 1276 22 0 0 0 chr9 90663882 90663904 -33412268 + AT_rich Low_complexity Low_complexity 1 22 0 2 1276 231 36 0 0 chr9 90664911 90664939 -33411233 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1276 1142 205 62 44 chr9 90664940 90665261 -33410911 - Lx7 LINE L1 -6 7690 7364 2 1276 1251 258 86 32 chr9 90665259 90665664 -33410508 - Lx9 LINE L1 -1035 6609 6183 2 1276 357 308 83 0 chr9 90667840 90667960 -33408212 - AmnSINE1 SINE SINE -139 436 307 2 1276 672 13 0 0 chr9 90668267 90668344 -33407828 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1276 769 248 0 24 chr9 90668344 90668509 -33407663 - RSINE1 SINE B4 -1 164 4 2 1276 1500 61 0 0 chr9 90669448 90669646 -33406526 - L1Md_F2 LINE L1 -3 6579 6382 2 1276 633 88 0 0 chr9 90669646 90669748 -33406424 + (TTTTG)n Simple_repeat Simple_repeat 3 104 0 2 1276 5693 29 16 0 chr9 90669756 90670440 -33405732 - L1Md_F2 LINE L1 -3 6579 5885 2 1276 487 292 14 0 chr9 90670480 90670624 -33405548 + B3 SINE B2 71 216 0 2 1276 23 0 0 0 chr9 90670776 90670799 -33405373 + AT_rich Low_complexity Low_complexity 1 23 0 2 1276 23 0 0 0 chr9 90670872 90670895 -33405277 + AT_rich Low_complexity Low_complexity 1 23 0 2 1276 398 173 0 13 chr9 90671350 90671426 -33404746 + ORR1D1 LTR MaLR 299 373 -1 2 1276 2019 219 42 13 chr9 90671427 90671876 -33404296 + ORR1D1-int LTR MaLR 1 462 -908 2 1276 180 163 0 0 chr9 90671886 90671929 -33404243 + GA-rich Low_complexity Low_complexity 2 44 0 2 1276 1589 266 92 6 chr9 90671929 90672611 -33403561 + ORR1D1-int LTR MaLR 415 1367 -3 2 1276 854 225 248 16 chr9 90672614 90672917 -33403255 + ORR1D1 LTR MaLR 1 373 -1 2 1276 722 255 67 21 chr9 90672955 90673239 -33402933 + L1_Mur3 LINE L1 3771 4067 -1813 2 1276 755 321 27 27 chr9 90673261 90673664 -33402508 + L1_Mur3 LINE L1 5221 5623 -257 2 1276 715 199 199 13 chr9 90673730 90673951 -33402221 + MTD LTR MaLR 5 266 -155 2 1276 502 0 59 0 chr9 90674225 90674293 -33401879 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 2 1276 422 336 36 40 chr9 90674678 90674901 -33401271 - L1MC LINE L1 -2064 5818 5597 2 1276 227 321 0 44 chr9 90675116 90675230 -33400942 - L1M5 LINE L1 -684 5440 5332 2 1276 237 397 38 0 chr9 90675765 90675896 -33400276 + MLT1A0 LTR MaLR 74 209 -156 2 1276 476 163 0 0 chr9 90676132 90676224 -33399948 - Lx3C LINE L1 -3 6973 6882 2 1276 2021 177 27 109 chr9 90676726 90677078 -33399094 + Lx7 LINE L1 1258 1588 -4292 2 1276 5042 70 3 1 chr9 90677078 90677738 -33398434 + L1_Mus3 LINE L1 5976 6636 -2 2 1276 2021 177 27 109 chr9 90677738 90677982 -33398190 + Lx7 LINE L1 1589 1805 -4075 2 1276 4960 85 5 0 chr9 90677974 90678633 -33397539 - L1_Mur1 LINE L1 -21 5865 5204 2 1276 742 164 0 52 chr9 90678633 90678787 -33397385 + Lx3A LINE L1 6829 6974 -7 2 1276 5953 226 65 36 chr9 90678810 90681348 -33394824 + Lx7 LINE L1 1785 4480 -1397 2 1276 3966 211 43 13 chr9 90681330 90682763 -33393409 + Lx7 LINE L1 4959 6434 -1262 2 1276 1397 234 116 133 chr9 90682763 90683385 -33392787 - RMER19C LTR ERVK 0 611 1 2 1276 795 201 82 144 chr9 90683386 90683705 -33392467 + Lx7 LINE L1 6419 6717 -743 2 1276 760 296 70 113 chr9 90683705 90684165 -33392007 + MT2A LTR ERVL 1 440 -93 2 1276 2497 213 95 12 chr9 90684197 90684787 -33391385 + Lx7 LINE L1 6724 7362 -334 2 1276 1333 193 7 27 chr9 90684892 90685190 -33390982 - Lx7 LINE L1 -22 7674 7383 2 1276 624 290 46 135 chr9 90685190 90685558 -33390614 + MTC-int LTR MaLR 192 526 -732 2 1276 351 236 33 22 chr9 90685558 90685649 -33390523 + ORR1D2 LTR MaLR 1 92 -278 2 1276 2264 69 0 81 chr9 90685778 90686123 -33390049 + L1_Mus2 LINE L1 6249 6565 -1 2 1276 31 58 0 0 chr9 90686582 90686634 -33389538 + AT_rich Low_complexity Low_complexity 1 52 0 2 1276 195 69 0 0 chr9 90687799 90687828 -33388344 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1276 8425 35 14 0 chr9 90688479 90689908 -33386264 - L1Md_F3 LINE L1 -4 6580 5123 2 1276 459 0 0 0 chr9 90689927 90689978 -33386194 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1276 446 252 25 67 chr9 90689992 90690111 -33386061 + RSINE1 SINE B4 3 116 -49 2 1276 358 108 0 30 chr9 90690133 90690200 -33385972 + (TCTCCC)n Simple_repeat Simple_repeat 3 67 0 2 1276 21 0 0 0 chr9 90690388 90690409 -33385763 + AT_rich Low_complexity Low_complexity 1 21 0 2 1276 209 275 182 56 chr9 90691908 90692139 -33384033 + L2 LINE L2 2280 2539 -880 2 1276 242 95 24 0 chr9 90692307 90692349 -33383823 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2 1276 3139 188 84 29 chr9 90693108 90693647 -33382525 + RMER1B Other Other 1 903 -163 2 1276 858 126 0 0 chr9 90693647 90693782 -33382390 + (TA)n Simple_repeat Simple_repeat 1 135 0 2 1276 3139 185 88 28 chr9 90693782 90693950 -33382222 + RMER1B Other Other 904 1065 -1 2 1276 305 269 0 139 chr9 90694088 90694196 -33381976 + PB1D10 SINE Alu 1 93 -24 2 1276 873 50 0 0 chr9 90694210 90694329 -33381843 + (CA)n Simple_repeat Simple_repeat 2 120 0 2 1276 400 169 45 13 chr9 90694330 90694486 -33381686 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 2 1276 291 250 12 12 chr9 90694623 90694708 -33381464 + (CATA)n Simple_repeat Simple_repeat 4 88 0 2 1276 273 29 0 0 chr9 90694759 90694793 -33381379 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1276 210 143 0 0 chr9 90694797 90694832 -33381340 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2 1276 36618 46 2 25 chr9 90694840 90700928 -33375244 - L1Md_F2 LINE L1 -5 6577 625 2 1276 450 79 0 0 chr9 90700929 90700992 -33375180 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1276 518 315 50 75 chr9 90701063 90701262 -33374910 - B3A SINE B2 -4 194 1 2 1276 224 176 39 0 chr9 90701638 90701689 -33374483 + GA-rich Low_complexity Low_complexity 1 53 0 2 1276 180 111 0 0 chr9 90701693 90701720 -33374452 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 2 159 331 373 8 0 chr9 90701754 90701880 -33374292 - RSINE1 SINE B4 -38 127 1 2 1277 626 271 80 0 chr9 90701998 90702149 -33374023 - B3 SINE B2 -34 182 20 3 1277 952 289 32 43 chr9 90702375 90702882 -33373290 + L1MA5 LINE L1 5485 5997 -186 3 1277 4439 12 0 0 chr9 90702983 90703476 -33372696 - MT2_Mm LTR ERVL 0 493 1 3 1277 314 0 0 0 chr9 90703476 90703514 -33372658 - MERVL-int LTR ERVL 0 5485 5448 3 1277 392 167 46 35 chr9 90703514 90703601 -33372571 - ORR1A3-int LTR MaLR -1323 640 553 3 1277 47120 16 8 0 chr9 90703601 90708921 -33367251 - MERVL-int LTR ERVL -125 5360 1 3 1277 4439 12 0 0 chr9 90708921 90709414 -33366758 - MT2_Mm LTR ERVL 0 493 1 3 1277 320 242 66 102 chr9 90709679 90709845 -33366327 + MT2B LTR ERVL 137 296 -305 3 1277 782 190 29 0 chr9 90709717 90709854 -33366318 + B1_Mur2 SINE Alu 9 149 0 3 1277 2954 290 30 65 chr9 90709909 90711095 -33365077 + Lx8 LINE L1 6299 7443 -30 3 1277 21 71 0 0 chr9 90711111 90711153 -33365019 + AT_rich Low_complexity Low_complexity 1 42 0 3 1277 32 75 0 0 chr9 90711209 90711276 -33364896 + AT_rich Low_complexity Low_complexity 1 67 0 3 1277 24 0 0 0 chr9 90711459 90711483 -33364689 + AT_rich Low_complexity Low_complexity 1 24 0 3 1277 877 69 123 0 chr9 90712265 90712395 -33363777 + B1_Mus2 SINE Alu 2 147 0 3 1277 5857 82 10 0 chr9 90712503 90713297 -33362875 - L1_Mus3 LINE L1 -5 6633 5832 3 1277 204 217 0 0 chr9 90713448 90713494 -33362678 + CT-rich Low_complexity Low_complexity 1 46 0 3 1277 438 327 59 13 chr9 90713510 90713662 -33362510 - B3 SINE B2 -13 203 45 3 1277 384 101 319 0 chr9 90713664 90713733 -33362439 + URR1B DNA MER1_type 2 92 -133 3 1277 4766 136 36 3 chr9 90713734 90714501 -33361671 + L1Md_F LINE L1 327 1119 -5400 3 1277 10384 69 7 14 chr9 90714489 90715893 -33360279 + L1Md_F2 LINE L1 4191 5585 -298 3 1277 7308 72 22 3 chr9 90715896 90716862 -33359310 + L1Md_F2 LINE L1 5589 6572 -10 3 1277 524 118 144 86 chr9 90716870 90717009 -33359163 + URR1B DNA MER1_type 79 225 0 3 1277 25 0 0 0 chr9 90717240 90717265 -33358907 + AT_rich Low_complexity Low_complexity 1 25 0 3 1277 21 71 0 0 chr9 90717619 90717661 -33358511 + AT_rich Low_complexity Low_complexity 1 42 0 3 1277 392 306 134 48 chr9 90719251 90719519 -33356653 + B4A SINE B4 2 292 0 3 1277 334 219 7 7 chr9 90719554 90719706 -33356466 + GA-rich Low_complexity Low_complexity 2 153 0 3 1277 333 202 21 11 chr9 90719712 90719807 -33356365 + (CAGA)n Simple_repeat Simple_repeat 4 99 0 3 1277 398 311 28 0 chr9 90719950 90720056 -33356116 + B3A SINE B2 57 165 -33 3 1277 21 0 0 0 chr9 90722268 90722289 -33353883 + AT_rich Low_complexity Low_complexity 1 21 0 3 1277 510 31 0 0 chr9 90724234 90724298 -33351874 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1277 234 182 55 0 chr9 90724511 90724566 -33351606 + T-rich Low_complexity Low_complexity 2 59 0 3 1277 206 358 94 38 chr9 90724931 90725166 -33351006 - MIRb SINE MIR -8 260 13 3 1277 618 109 0 0 chr9 90726028 90726120 -33350052 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 1277 363 333 11 0 chr9 90726140 90726227 -33349945 - RSINE1 SINE B4 -10 155 68 3 1277 180 0 0 0 chr9 90726252 90726272 -33349900 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1277 355 376 69 24 chr9 90726523 90726734 -33349438 + MIRb SINE MIR 1 224 -44 3 1277 249 139 0 0 chr9 90726816 90726859 -33349313 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1277 279 0 0 0 chr9 90727390 90727421 -33348751 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1277 279 0 0 0 chr9 90728410 90728441 -33347731 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1277 948 101 0 0 chr9 90730049 90730187 -33345985 + (TCCCC)n Simple_repeat Simple_repeat 3 140 0 3 1277 390 21 0 0 chr9 90731844 90731891 -33344281 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1277 24 0 0 0 chr9 90733361 90733385 -33342787 + AT_rich Low_complexity Low_complexity 1 24 0 3 1277 188 103 51 0 chr9 90734043 90734082 -33342090 + T-rich Low_complexity Low_complexity 2 42 0 3 1277 534 174 71 0 chr9 90734397 90734495 -33341677 + Lx7 LINE L1 7209 7313 -383 3 1277 450 0 0 0 chr9 90734506 90734556 -33341616 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1277 336 340 118 9 chr9 90734704 90734814 -33341358 + RSINE1 SINE B4 44 165 0 3 1277 333 0 0 0 chr9 90734826 90734863 -33341309 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1277 585 306 74 81 chr9 90735010 90735294 -33340878 - MTE2a LTR MaLR -3 376 95 3 1277 227 31 0 30 chr9 90735294 90735327 -33340845 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 1277 353 393 79 25 chr9 90735699 90735939 -33340233 - LTR33C LTR ERVL -338 291 39 3 1277 3928 105 15 35 chr9 90735963 90736564 -33339608 - Lx LINE L1 -2 6652 6064 3 1277 563 271 63 25 chr9 90736614 90736764 -33339408 + L1MA7 LINE L1 6002 6148 -143 3 1277 252 0 0 0 chr9 90736764 90736792 -33339380 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1277 1079 156 28 0 chr9 90736800 90736980 -33339192 + B2_Mm1t SINE B2 1 185 -8 3 1277 563 271 63 25 chr9 90736980 90737058 -33339114 + L1MA7 LINE L1 6170 6247 -44 3 1277 2155 189 50 0 chr9 90737335 90737736 -33338436 + MTC LTR MaLR 1 421 0 3 1277 361 364 41 41 chr9 90738223 90738418 -33337754 + B4A SINE B4 90 284 -8 3 1277 306 0 0 0 chr9 90738420 90738454 -33337718 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1277 346 248 0 0 chr9 90738484 90738590 -33337582 - L1_Mm LINE L1 -679 5477 5356 3 1277 418 238 0 0 chr9 90738623 90738703 -33337469 - B3 SINE B2 -5 211 132 3 1277 434 115 155 103 chr9 90738757 90738873 -33337299 - ORR1C2 LTR MaLR -1 383 262 3 1277 270 323 99 14 chr9 90738888 90739111 -33337061 - L1M2 LINE L1 -924 5219 4978 3 1277 21 36 0 0 chr9 90739125 90739153 -33337019 + AT_rich Low_complexity Low_complexity 1 28 0 3 1277 369 277 106 73 chr9 90739518 90739796 -33336376 - L1MA4 LINE L1 -1671 5973 5685 3 1277 228 354 0 0 chr9 90739874 90739973 -33336199 + MurSatRep1 Unknown Unknown 149 247 -1890 3 1277 2722 182 30 19 chr9 90740053 90740585 -33335587 - Lx2 LINE L1 0 6997 6460 3 1277 21 0 0 0 chr9 90742773 90742794 -33333378 + AT_rich Low_complexity Low_complexity 1 21 0 3 1277 21 0 0 0 chr9 90742960 90742981 -33333191 + AT_rich Low_complexity Low_complexity 1 21 0 3 1277 21 71 0 0 chr9 90743525 90743567 -33332605 + AT_rich Low_complexity Low_complexity 1 42 0 3 1277 225 333 28 0 chr9 90743965 90744037 -33332135 - ID4 SINE ID -4 79 6 3 1277 1176 42 0 0 chr9 90744371 90744515 -33331657 + B1_Mus2 SINE Alu 1 144 -3 3 1277 276 30 0 0 chr9 90744515 90744548 -33331624 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1277 266 271 14 0 chr9 90744741 90744811 -33331361 + ID4_ SINE ID 2 72 -11 3 1277 366 327 56 31 chr9 90745025 90745186 -33330986 - MLT1A0 LTR MaLR -64 301 137 3 1277 241 301 9 37 chr9 90745988 90746095 -33330077 + RMER12 LTR ERVK 743 846 -476 3 1277 244 283 0 0 chr9 90746095 90746148 -33330024 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1277 1154 88 0 0 chr9 90746212 90746359 -33329813 + B1_Mus2 SINE Alu 1 147 0 3 1277 38 0 0 0 chr9 90746365 90746403 -33329769 + AT_rich Low_complexity Low_complexity 1 38 0 3 1277 504 0 0 0 chr9 90747338 90747394 -33328778 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1277 489 99 0 0 chr9 90747536 90747617 -33328555 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1277 378 0 0 0 chr9 90747638 90747680 -33328492 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1277 483 18 0 0 chr9 90748493 90748549 -33327623 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 3 1277 19258 88 3 1 chr9 90748582 90752170 -33324002 + L1Md_F2 LINE L1 330 3925 -1958 3 1277 2889 33 5 14 chr9 90752170 90752540 -33323632 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1277 53868 30 18 5 chr9 90752540 90758932 -33317240 - IAPEz-int LTR ERVK 0 6481 8 3 1277 2889 33 5 14 chr9 90758932 90759302 -33316870 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1277 12761 64 1 4 chr9 90759302 90760974 -33315198 + L1Md_F2 LINE L1 3920 5585 -298 3 1277 8123 47 7 0 chr9 90760975 90761963 -33314209 + L1Md_F2 LINE L1 5587 6581 -1 3 1277 687 273 61 142 chr9 90762113 90762510 -33313662 - RLTR18 LTR ERVK 0 616 111 3 1277 5255 268 60 72 chr9 90762737 90763205 -33312967 + L1_Mur3 LINE L1 1479 2029 -3851 3 1277 279 54 0 0 chr9 90763205 90763242 -33312930 + (CAA)n Simple_repeat Simple_repeat 1 37 0 3 1277 5255 268 60 72 chr9 90763242 90765420 -33310752 + L1_Mur3 LINE L1 2030 4092 -1788 3 1277 548 268 127 48 chr9 90765418 90765944 -33310228 + L1_Mur3 LINE L1 2788 3355 -2525 3 1277 1205 45 0 0 chr9 90766231 90766385 -33309787 - L1Md_F3 LINE L1 -2 6582 6429 3 1277 242 242 61 31 chr9 90767438 90767536 -33308636 + L1MA7 LINE L1 6185 6285 -6 3 1277 1265 342 72 39 chr9 90767560 90768299 -33307873 - Lx8 LINE L1 -2 7471 6709 3 1277 1701 182 326 26 chr9 90768408 90768939 -33307233 + RMER6C LTR ERVK 1 690 0 3 1277 501 17 0 0 chr9 90769262 90769320 -33306852 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1277 375 23 0 0 chr9 90769320 90769363 -33306809 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1277 38851 32 0 8 chr9 90769470 90775494 -33300678 - L1Md_A LINE L1 0 6582 613 3 1277 30 45 0 0 chr9 90775816 90775860 -33300312 + AT_rich Low_complexity Low_complexity 1 44 0 3 1277 28 0 0 0 chr9 90776822 90776850 -33299322 + AT_rich Low_complexity Low_complexity 1 28 0 3 1277 570 15 0 0 chr9 90778442 90778509 -33297663 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1277 327 127 0 0 chr9 90778510 90778573 -33297599 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1277 1677 184 42 15 chr9 90780596 90780933 -33295239 + ORR1B1 LTR MaLR 41 386 -8 3 1277 183 139 0 0 chr9 90781292 90781328 -33294844 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1277 183 80 0 0 chr9 90781637 90781662 -33294510 + (TCC)n Simple_repeat Simple_repeat 3 27 0 3 1277 456 67 0 0 chr9 90782145 90782205 -33293967 + (TAA)n Simple_repeat Simple_repeat 1 60 0 3 1277 447 329 107 40 chr9 90782737 90782886 -33293286 - RSINE1 SINE B4 -4 161 3 3 1277 270 56 0 0 chr9 90783288 90783324 -33292848 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1277 322 303 133 32 chr9 90783849 90784097 -33292075 + Lx8 LINE L1 6454 6726 -747 3 1277 2143 194 96 4 chr9 90784295 90784797 -33291375 - Lx7 LINE L1 -435 7261 6714 4 1277 766 230 85 51 chr9 90784796 90785185 -33290987 + Lx7 LINE L1 7295 7696 0 4 1277 225 128 0 0 chr9 90786242 90786289 -33289883 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 4 1277 483 130 0 0 chr9 90786289 90786366 -33289806 + (TCTCCC)n Simple_repeat Simple_repeat 4 80 0 4 1277 208 88 27 68 chr9 90786544 90786617 -33289555 + A-rich Low_complexity Low_complexity 4 73 0 4 1277 680 246 15 50 chr9 90787128 90787329 -33288843 + B3A SINE B2 5 198 0 4 1277 4403 131 45 12 chr9 90789598 90790333 -33285839 - Lx2 LINE L1 0 6997 6239 4 1277 1018 116 39 28 chr9 90790333 90790511 -33285661 + L1_Mur2 LINE L1 4123 4302 -1575 4 1277 1938 286 58 38 chr9 90790512 90791269 -33284903 - Lx9 LINE L1 -532 7112 6341 4 1277 481 365 101 46 chr9 90791772 90792399 -33283773 - L1M5 LINE L1 -916 5230 4570 4 1277 481 285 103 7 chr9 90792415 90792560 -33283612 - B3 SINE B2 0 216 58 4 1277 6301 57 5 33 chr9 90792755 90793597 -33282575 - L1Md_F2 LINE L1 -12 6570 5753 4 1277 808 280 9 9 chr9 90793620 90793836 -33282336 - B3 SINE B2 0 216 1 4 1277 21 36 0 0 chr9 90793984 90794012 -33282160 + AT_rich Low_complexity Low_complexity 1 28 0 4 1277 231 257 99 14 chr9 90794050 90794121 -33282051 - ID2 SINE ID -4 79 3 4 1277 453 338 146 39 chr9 90794169 90794730 -33281442 - L1MD LINE L1 -1863 4283 3663 4 1277 324 275 79 14 chr9 90795023 90795303 -33280869 - L1MD LINE L1 -2939 3207 2910 4 1277 328 277 15 0 chr9 90795385 90795450 -33280722 - RSINE1 SINE B4 -2 163 98 4 1277 1162 253 98 15 chr9 90795656 90796002 -33280170 + Lx6 LINE L1 6152 6733 -727 4 1277 1230 78 0 0 chr9 90796002 90796182 -33279990 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1277 1162 273 117 49 chr9 90796182 90796774 -33279398 + Lx6 LINE L1 6734 7434 -26 4 1277 237 239 0 0 chr9 90796968 90797014 -33279158 - RSINE1 SINE B4 -66 99 54 4 1277 384 250 0 0 chr9 90797513 90797585 -33278587 + ID4_ SINE ID 9 80 -3 4 1277 234 0 0 0 chr9 90799379 90799405 -33276767 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1277 25 0 0 0 chr9 90799600 90799625 -33276547 + AT_rich Low_complexity Low_complexity 1 25 0 4 1277 1036 224 21 0 chr9 90800148 90800340 -33275832 + B3 SINE B2 1 196 -20 4 1277 474 18 0 0 chr9 90800341 90800396 -33275776 + (TAAAA)n Simple_repeat Simple_repeat 4 58 0 4 1277 25 90 0 0 chr9 90800556 90800623 -33275549 + AT_rich Low_complexity Low_complexity 1 67 0 4 1277 395 301 18 0 chr9 90800665 90800778 -33275394 + RMER1B Other Other 39 153 -913 4 1277 1605 252 94 53 chr9 90800970 90801629 -33274543 + RMER1C Other Other 380 1065 -277 4 1277 325 174 10 113 chr9 90802113 90802210 -33273962 - L1_Rod LINE L1 -3254 2593 2507 4 1277 1388 232 65 15 chr9 90802217 90802681 -33273491 - L1_Rod LINE L1 -4076 1771 1285 4 1277 286 224 137 8 chr9 90803150 90803267 -33272905 - L1_Rod LINE L1 -6405 1203 1072 4 1277 978 151 0 16 chr9 90803734 90803923 -33272249 - Lx LINE L1 -3 6651 6466 4 1277 1717 144 9 24 chr9 90803923 90804258 -33271914 - L1_Mur2 LINE L1 -541 5336 5007 4 1277 1184 89 6 0 chr9 90804498 90804677 -33271495 - L1Md_F2 LINE L1 -1 6581 6402 4 1277 3138 262 91 30 chr9 90804928 90805952 -33270220 + Lx8 LINE L1 4353 5440 -440 4 1277 213 39 0 0 chr9 90805952 90805978 -33270194 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4 1277 3138 262 91 30 chr9 90805978 90806059 -33270113 + Lx8 LINE L1 5441 5541 -339 4 1277 1464 149 0 5 chr9 90806059 90806282 -33269890 + URR1B DNA MER1_type 2 223 -2 4 1277 3138 289 102 37 chr9 90806282 90806882 -33269290 + Lx8 LINE L1 5542 6198 -1275 4 1277 550 36 48 0 chr9 90806882 90806965 -33269207 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 4 1277 573 15 0 0 chr9 90806967 90807033 -33269139 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1277 2070 319 116 44 chr9 90807033 90808201 -33267971 + Lx8 LINE L1 6199 7449 -24 4 1277 890 285 116 51 chr9 90808198 90808985 -33267187 - L1_Rod LINE L1 -3148 2699 1862 4 1277 382 335 36 23 chr9 90809494 90809714 -33266458 - L1MC4 LINE L1 -3728 2487 2265 4 1277 373 310 125 39 chr9 90810404 90810612 -33265560 - L1MC4 LINE L1 -4477 1738 1513 4 1277 1083 161 80 5 chr9 90811271 90811471 -33264701 - MTD LTR MaLR -9 410 196 4 1277 330 318 81 29 chr9 90811465 90811601 -33264571 - B1_Mur2 SINE Alu -5 144 2 4 1277 331 259 11 45 chr9 90811601 90811682 -33264490 - MTD LTR MaLR -214 205 128 4 1277 21 0 0 0 chr9 90811990 90812011 -33264161 + AT_rich Low_complexity Low_complexity 1 21 0 4 1277 4178 133 65 8 chr9 90812615 90813380 -33262792 - RMER17D2 LTR ERVK 0 809 1 4 1277 986 205 19 35 chr9 90813647 90813905 -33262267 + Lx9 LINE L1 7201 7454 -190 4 1277 309 68 0 0 chr9 90813905 90813949 -33262223 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1277 249 145 177 38 chr9 90813950 90814029 -33262143 + Lx9 LINE L1 7547 7636 -8 4 1277 663 311 10 0 chr9 90814086 90814292 -33261880 + Lx8 LINE L1 6356 6563 -910 4 1277 589 246 183 50 chr9 90814342 90814582 -33261590 + RLTR10A LTR ERVK 140 411 0 4 1277 372 211 61 52 chr9 90814598 90814713 -33261459 + RLTR10-int LTR ERVK 318 433 -1554 4 1277 1322 38 0 0 chr9 90814876 90815036 -33261136 + B2_Mm1a SINE B2 1 160 -33 4 1277 210 37 0 0 chr9 90815036 90815063 -33261109 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1277 586 257 5 5 chr9 90815368 90815589 -33260583 + RLTR45-int LTR ERVK 3511 3855 -3726 4 1277 1674 268 55 45 chr9 90815977 90817535 -33258637 + RLTR45-int LTR ERVK 6530 7042 -202 4 1277 592 240 178 50 chr9 90817570 90817811 -33258361 + RLTR10A LTR ERVK 140 411 0 4 1277 535 362 0 0 chr9 90817813 90818001 -33258171 + Lx8 LINE L1 6559 6746 -727 4 1277 362 247 110 40 chr9 90818943 90819116 -33257056 - Lx8 LINE L1 -3 7470 7286 4 1277 25 31 0 0 chr9 90819884 90819916 -33256256 + AT_rich Low_complexity Low_complexity 1 32 0 4 1277 345 24 0 0 chr9 90820206 90820248 -33255924 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1277 216 0 0 0 chr9 90820248 90820271 -33255901 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1277 642 274 145 6 chr9 90820978 90821316 -33254856 + L1_Rod LINE L1 462 846 -6326 4 1277 477 238 72 7 chr9 90821354 90821506 -33254666 + Lx9 LINE L1 6871 7032 -612 4 1277 1148 286 37 14 chr9 90821493 90821988 -33254184 + Lx8 LINE L1 4745 5291 -855 4 1277 25105 74 1 19 chr9 90822090 90826350 -33249822 + L1Md_F2 LINE L1 509 4686 -1197 4 1277 2310 92 254 27 chr9 90826350 90826799 -33249373 - RLTR6_Mm LTR ERV1 -67 587 37 4 159 59186 16 14 0 chr9 90826908 90834518 -33241654 - RLTR6-int LTR ERV1 0 7778 1 4 1278 2381 94 244 28 chr9 90834518 90834986 -33241186 - RLTR6_Mm LTR ERV1 -49 605 37 4 1278 7093 65 1 0 chr9 90835093 90835995 -33240177 + L1Md_F2 LINE L1 4684 5586 -297 4 1278 7735 48 26 0 chr9 90835995 90836966 -33239206 + L1Md_F2 LINE L1 5587 6582 0 4 1278 1845 271 84 74 chr9 90836998 90837375 -33238797 + Lx8 LINE L1 5394 5786 -94 4 1278 1090 95 0 20 chr9 90837375 90837512 -33238660 + B1_Mus1 SINE Alu 1 137 -11 4 1278 255 31 0 0 chr9 90837512 90837544 -33238628 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1278 1090 95 0 20 chr9 90837544 90837557 -33238615 + B1_Mus1 SINE Alu 138 148 0 4 1278 1845 310 100 56 chr9 90837557 90838476 -33237696 + Lx8 LINE L1 5780 6752 -721 4 1278 767 319 85 45 chr9 90838936 90839058 -33237114 + Lx7 LINE L1 6730 6857 -839 4 1278 3402 38 0 0 chr9 90839058 90839454 -33236718 - MTA_Mm LTR MaLR 0 396 1 4 1278 767 319 85 45 chr9 90839454 90839516 -33236656 + Lx7 LINE L1 6858 6913 -783 4 1278 1351 199 32 113 chr9 90839516 90839923 -33236249 + ORR1D1 LTR MaLR 1 374 0 4 1278 767 319 85 45 chr9 90839923 90840209 -33235963 + Lx7 LINE L1 6914 7220 -476 4 1278 546 16 0 0 chr9 90840220 90840283 -33235889 + (TTTTA)n Simple_repeat Simple_repeat 2 64 0 4 1278 1174 49 0 0 chr9 90840283 90840427 -33235745 - B1_Mm SINE Alu -2 145 2 4 1278 240 167 0 0 chr9 90840595 90840643 -33235529 + GA-rich Low_complexity Low_complexity 5 52 0 4 1278 294 226 13 33 chr9 90840741 90840892 -33235280 + GA-rich Low_complexity Low_complexity 1 148 0 4 1278 508 187 8 8 chr9 90841417 90841541 -33234631 + (TA)n Simple_repeat Simple_repeat 2 125 0 4 1278 309 51 0 0 chr9 90841581 90841620 -33234552 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1278 198 0 0 0 chr9 90841873 90841895 -33234277 + (TAA)n Simple_repeat Simple_repeat 1 22 0 4 1278 1111 22 0 77 chr9 90842630 90842825 -33233347 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1278 798 152 0 17 chr9 90842840 90843020 -33233152 + CT-rich Low_complexity Low_complexity 2 178 0 4 1278 209 182 18 0 chr9 90843071 90843126 -33233046 + CT-rich Low_complexity Low_complexity 2 57 0 4 1278 563 299 81 33 chr9 90843172 90843383 -33232789 - ID_B1 SINE B4 -3 221 1 4 1278 213 39 0 0 chr9 90843707 90843733 -33232439 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 4 1278 796 46 18 0 chr9 90844245 90844354 -33231818 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 4 1278 217 333 92 9 chr9 90844565 90844592 -33231580 + B3A SINE B2 65 131 -67 4 1278 228 220 0 78 chr9 90844592 90844656 -33231516 + B4 SINE B4 234 292 0 4 1278 217 333 92 9 chr9 90844656 90844674 -33231498 + B3A SINE B2 132 182 -16 4 1278 255 279 0 14 chr9 90844674 90844743 -33231429 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1278 280 314 0 11 chr9 90845262 90845349 -33230823 + B4 SINE B4 2 87 -205 4 1278 339 235 57 75 chr9 90845370 90845476 -33230696 + ORR1D2 LTR MaLR 264 367 -3 4 1278 2297 235 6 30 chr9 90845700 90846191 -33229981 + Lx6 LINE L1 6803 7281 -179 4 1278 279 322 52 0 chr9 90846286 90846401 -33229771 + Lx7 LINE L1 7219 7339 -357 4 1278 209 216 20 0 chr9 90846446 90846497 -33229675 + T-rich Low_complexity Low_complexity 3 54 0 4 1278 29 47 0 0 chr9 90846571 90846614 -33229558 + AT_rich Low_complexity Low_complexity 1 43 0 4 1278 3300 50 2 7 chr9 90846670 90847094 -33229078 - L1Md_F3 LINE L1 -14 6570 6149 4 1278 573 326 134 4 chr9 90847117 90847394 -33228778 + Lx8 LINE L1 6973 7285 -188 4 1278 441 0 0 0 chr9 90847430 90847479 -33228693 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1278 219 69 0 0 chr9 90847508 90847537 -33228635 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 4 1278 2965 82 17 0 chr9 90847622 90848035 -33228137 - BGLII LTR ERVK -1 420 1 4 1278 801 111 14 7 chr9 90848215 90848360 -33227812 - L1_Mus3 LINE L1 -2 6636 6491 4 1278 518 29 15 0 chr9 90849508 90849576 -33226596 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1278 444 147 0 0 chr9 90849806 90849881 -33226291 + (TAA)n Simple_repeat Simple_repeat 2 76 0 4 1278 290 341 15 38 chr9 90850075 90850206 -33225966 - MER20 DNA MER1_type -61 158 31 4 1278 189 262 0 0 chr9 90850953 90850995 -33225177 - MER5B DNA MER1_type 0 178 137 4 1278 234 382 99 20 chr9 90851186 90851338 -33224834 + MER5B DNA MER1_type 4 167 -11 4 1278 237 312 156 0 chr9 90851345 90851441 -33224731 - MER5A DNA MER1_type -25 164 54 4 1278 3174 188 59 22 chr9 90851485 90852116 -33224056 + Lx5 LINE L1 6383 7036 -14 4 1278 302 186 92 11 chr9 90852116 90852203 -33223969 + Kanga1d DNA Tc2 470 563 -46 4 1278 1744 38 0 0 chr9 90852315 90852527 -33223645 + L1Md_T LINE L1 6364 6575 -7 4 1278 218 250 69 56 chr9 90852571 90852643 -33223529 - MER5A DNA MER1_type -116 73 1 4 1278 1310 170 5 0 chr9 90852752 90852976 -33223196 - URR1B DNA MER1_type 0 225 1 4 1278 906 51 0 0 chr9 90853062 90853180 -33222992 - B1_Mm SINE Alu 0 147 30 4 1278 273 346 9 0 chr9 90853306 90853413 -33222759 - Lx2 LINE L1 -1 6996 6889 5 1278 958 295 95 32 chr9 90853976 90854821 -33221351 + L1M4 LINE L1 2642 3539 -2607 5 1278 226 385 28 28 chr9 90855333 90855440 -33220732 - MLT1E1A LTR MaLR -64 616 510 5 1278 710 244 135 0 chr9 90855447 90855492 -33220680 + MTEa LTR MaLR 12 58 -321 5 1278 312 27 0 0 chr9 90855492 90855529 -33220643 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1278 710 244 135 0 chr9 90855529 90855676 -33220496 + MTEa LTR MaLR 59 229 -150 5 1278 670 200 67 0 chr9 90858114 90858234 -33217938 + B3 SINE B2 2 129 -87 5 1278 327 25 0 0 chr9 90859446 90859486 -33216686 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1278 273 182 0 0 chr9 90859530 90859585 -33216587 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 5 1278 1374 285 30 77 chr9 90860151 90860879 -33215293 - L1_Rod LINE L1 -1046 4801 4109 5 1278 949 167 164 15 chr9 90860879 90861074 -33215098 + URR1B DNA MER1_type 1 224 -1 5 1278 1374 285 30 77 chr9 90861074 90861159 -33215013 - L1_Rod LINE L1 -1739 4108 4027 5 1278 249 271 71 0 chr9 90861160 90861245 -33214927 + L1_Rod LINE L1 4989 5079 -768 5 1278 279 264 0 0 chr9 90861245 90861374 -33214798 + (CA)n Simple_repeat Simple_repeat 2 130 0 5 1278 1509 243 81 35 chr9 90861375 90861546 -33214626 + L1_Rod LINE L1 5096 5276 -571 5 1278 180 0 0 0 chr9 90861546 90861566 -33214606 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1278 1509 243 81 35 chr9 90861566 90861936 -33214236 + L1_Rod LINE L1 5277 5662 -185 5 1278 1506 320 75 46 chr9 90861947 90862811 -33213361 + Lx9 LINE L1 6610 7498 -146 5 1278 186 73 23 47 chr9 90862899 90862942 -33213230 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1278 341 312 0 0 chr9 90863595 90863675 -33212497 + RSINE1 SINE B4 14 93 -72 5 1278 23 68 0 0 chr9 90863741 90863785 -33212387 + AT_rich Low_complexity Low_complexity 1 44 0 5 1278 725 84 8 0 chr9 90864008 90864127 -33212045 + (CA)n Simple_repeat Simple_repeat 1 120 0 5 1278 252 278 139 46 chr9 90864170 90864339 -33211833 + L1M2 LINE L1 4976 5165 -978 5 1278 180 0 0 0 chr9 90864339 90864359 -33211813 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1278 252 281 124 41 chr9 90864359 90864607 -33211565 + L1M2 LINE L1 5166 5432 -880 5 1278 1670 45 0 0 chr9 90864732 90864934 -33211238 + L1_Mus2 LINE L1 6075 6276 -290 5 1278 845 150 12 23 chr9 90864934 90865105 -33211067 + L1_Mus3 LINE L1 6468 6636 -2 5 1278 576 269 150 39 chr9 90865572 90865928 -33210244 + Lx8 LINE L1 5501 5924 -1720 5 1278 242 292 0 71 chr9 90867523 90867593 -33208579 + tRNA-Ala-GCY_ tRNA tRNA 1 65 -10 5 1278 363 266 145 82 chr9 90869505 90869836 -33206336 + L1_Rod LINE L1 3182 3533 -2314 5 1278 4139 37 0 0 chr9 90869836 90870326 -33205846 - L1Md_T LINE L1 0 6582 6093 5 1278 4018 23 0 0 chr9 90870326 90870799 -33205373 + L1_Mm LINE L1 4162 4634 -1249 5 1278 450 278 9 0 chr9 90870815 90870930 -33205242 + L1M2 LINE L1 4846 4961 -1182 5 1278 251 183 0 48 chr9 90870919 90870982 -33205190 + Lx6 LINE L1 6704 6763 -697 5 1278 1013 128 0 0 chr9 90870990 90871138 -33205034 - Lx3A LINE L1 -193 5693 5546 5 1278 8291 97 30 7 chr9 90871139 90872352 -33203820 + Lx3A LINE L1 5735 6975 -6 5 1278 3464 198 55 19 chr9 90872381 90873052 -33203120 + Lx6 LINE L1 6761 7455 -5 5 1278 580 316 10 16 chr9 90873076 90873269 -33202903 + B3A SINE B2 2 193 -5 5 1278 527 300 35 102 chr9 90873292 90873523 -33202649 + L1M2 LINE L1 5389 5605 -578 5 1278 4527 130 36 7 chr9 90873523 90874238 -33201934 - RMER19A LTR ERVK 0 737 2 5 1278 270 300 36 103 chr9 90874238 90874262 -33201910 + L1M2 LINE L1 5604 5627 -732 5 1278 609 14 0 0 chr9 90874291 90874361 -33201811 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1278 315 0 0 0 chr9 90874360 90874395 -33201777 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1278 894 261 80 8 chr9 90874395 90874720 -33201452 + Lx7 LINE L1 5612 5965 -1679 5 1278 448 273 16 24 chr9 90874871 90874995 -33201177 + B1F SINE Alu 24 146 -3 5 1278 1062 91 7 0 chr9 90875635 90875778 -33200394 - B1_Mm SINE Alu 0 147 4 5 1278 249 33 0 0 chr9 90876029 90876059 -33200113 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 1278 2159 101 82 0 chr9 90876231 90876559 -33199613 + IAPEY2_LTR LTR ERVK 1 355 -2 5 1278 211 340 124 39 chr9 90876701 90876854 -33199318 - L2 LINE L2 -559 2860 2695 5 1278 24 0 0 0 chr9 90877076 90877100 -33199072 + AT_rich Low_complexity Low_complexity 1 24 0 5 1278 1133 62 7 0 chr9 90877109 90877253 -33198919 + B1_Mus1 SINE Alu 4 148 0 5 1278 3182 224 69 72 chr9 90877268 90877971 -33198201 - Lx6 LINE L1 -19 7441 6766 5 1278 180 0 0 0 chr9 90877971 90877991 -33198181 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 5 1278 3182 224 69 72 chr9 90877991 90878096 -33198076 - Lx6 LINE L1 -695 6765 6636 5 1278 7100 108 37 5 chr9 90878240 90879560 -33196612 + Lx LINE L1 5278 6646 -8 5 1278 21 0 0 0 chr9 90879569 90879590 -33196582 + AT_rich Low_complexity Low_complexity 1 21 0 5 1278 2499 84 5 58 chr9 90880139 90880532 -33195640 + L1Md_F2 LINE L1 6199 6570 -12 5 1278 342 0 0 0 chr9 90880730 90880768 -33195404 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1278 3298 298 45 49 chr9 90880934 90882682 -33193490 + Lx7 LINE L1 5483 7219 -477 5 1278 392 150 0 12 chr9 90882908 90882989 -33193183 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1278 41 0 0 0 chr9 90883066 90883107 -33193065 + AT_rich Low_complexity Low_complexity 1 41 0 5 1278 558 108 0 0 chr9 90883622 90883705 -33192467 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 1278 438 157 0 0 chr9 90884446 90884529 -33191643 + GA-rich Low_complexity Low_complexity 2 84 0 5 1278 381 289 78 41 chr9 90885489 90885734 -33190438 + L1M5 LINE L1 5524 5777 -402 5 1278 506 16 16 0 chr9 90885878 90885941 -33190231 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1278 308 242 0 15 chr9 90885942 90886009 -33190163 + HAL1-3A_ME LINE L1 1975 2040 -818 5 1278 1361 282 61 18 chr9 90886233 90886863 -33189309 + Lx8 LINE L1 5483 6164 -1532 5 1278 2244 287 65 20 chr9 90886868 90887432 -33188740 + Lx8 LINE L1 6341 6903 -570 5 1278 387 0 0 0 chr9 90887432 90887475 -33188697 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1278 2244 287 65 20 chr9 90887475 90887695 -33188477 + Lx8 LINE L1 6904 7159 -314 5 1278 257 0 0 95 chr9 90887857 90887899 -33188273 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1278 347 343 49 14 chr9 90888750 90888892 -33187280 + B1F1 SINE Alu 1 147 -2 5 1278 1054 167 98 0 chr9 90888979 90889183 -33186989 + URR1A DNA MER1_type 3 226 0 5 1278 565 283 7 14 chr9 90891052 90891199 -33184973 + RSINE1 SINE B4 3 148 -17 5 1278 646 270 6 65 chr9 90891848 90892108 -33184064 - Lx7 LINE L1 0 5847 5628 5 1278 278 186 0 44 chr9 90892370 90892460 -33183712 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1278 1147 119 39 6 chr9 90892641 90892819 -33183353 + B2_Mm2 SINE B2 2 185 -10 5 1278 430 359 13 19 chr9 90892833 90892992 -33183180 - RSINE1 SINE B4 -5 160 3 5 1278 23 33 0 0 chr9 90893202 90893232 -33182940 + AT_rich Low_complexity Low_complexity 1 30 0 5 1278 233 329 13 26 chr9 90893232 90893310 -33182862 - ID4_ SINE ID -3 80 4 5 1278 206 208 20 20 chr9 90893543 90893592 -33182580 + MIRc SINE MIR 108 156 -112 5 1278 8775 9 9 0 chr9 90894439 90895748 -33180424 - L1Md_T LINE L1 0 6582 5262 5 1278 7512 26 0 0 chr9 90895747 90896628 -33179544 + L1Md_T LINE L1 4382 5262 -621 5 1278 432 241 0 0 chr9 90897510 90897597 -33178575 + B3A SINE B2 3 89 -109 5 1278 262 320 93 74 chr9 90897597 90897669 -33178503 + RSINE1 SINE B4 4 165 0 5 1278 260 200 25 12 chr9 90898113 90898194 -33177978 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1278 204 125 0 0 chr9 90898625 90898657 -33177515 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1278 342 0 0 0 chr9 90900240 90900278 -33175894 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1278 536 316 39 35 chr9 90900366 90900665 -33175507 - L1MA4 LINE L1 -388 5912 5589 5 1278 287 269 39 0 chr9 90900702 90900806 -33175366 - L1MEc LINE L1 -3952 2448 2321 5 1278 302 327 60 47 chr9 90900978 90901193 -33174979 - L1MEc LINE L1 -3966 2087 1870 5 1278 741 124 7 21 chr9 90901209 90901349 -33174823 + GA-rich Low_complexity Low_complexity 3 140 0 5 1278 2213 233 72 31 chr9 90901611 90902156 -33174016 - Lx6 LINE L1 -136 7324 6758 5 1278 216 0 0 0 chr9 90902672 90902696 -33173476 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1278 386 20 0 19 chr9 90902960 90903012 -33173160 + (TTG)n Simple_repeat Simple_repeat 2 52 0 5 1278 26 0 0 0 chr9 90903694 90903720 -33172452 + AT_rich Low_complexity Low_complexity 1 26 0 5 1278 189 0 0 0 chr9 90903775 90903796 -33172376 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1278 711 343 19 4 chr9 90904741 90905010 -33171162 + B4A SINE B4 1 273 -19 5 1278 228 357 8 25 chr9 90906991 90907109 -33169063 - PB1 SINE Alu -3 124 9 5 1278 618 279 66 5 chr9 90908599 90908797 -33167375 - B3 SINE B2 -6 210 1 5 1278 236 272 75 69 chr9 90909559 90909733 -33166439 - Lx7 LINE L1 -384 7312 7138 5 1278 595 302 159 25 chr9 90909766 90910283 -33165889 + L1_Mur3 LINE L1 4007 4592 -1288 5 1278 194 62 0 30 chr9 90910297 90910330 -33165842 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1278 366 344 121 10 chr9 90910910 90911218 -33164954 + L2a LINE L2 2842 3175 -251 5 1278 291 28 0 0 chr9 90911440 90911476 -33164696 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 5 1278 315 0 0 0 chr9 90911679 90911714 -33164458 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1278 1557 288 16 27 chr9 90912045 90912530 -33163642 + Lx9 LINE L1 6681 7160 -484 5 1278 2880 252 52 141 chr9 90912532 90913329 -33162843 + Lx9 LINE L1 4196 4944 -903 5 1278 3155 153 43 2 chr9 90913329 90913859 -33162313 + Lx3B LINE L1 6422 6973 0 5 1278 2880 262 121 94 chr9 90913859 90915550 -33160622 + Lx9 LINE L1 4945 6731 -913 5 1278 623 291 9 57 chr9 90915560 90915771 -33160401 + Lx9 LINE L1 6960 7160 -484 5 1278 4186 138 26 4 chr9 90915793 90916508 -33159664 + Lx2A LINE L1 5011 5741 -1267 5 1278 375 213 38 51 chr9 90917690 90917769 -33158403 + PB1D10 SINE Alu 12 89 -60 5 1278 1259 258 102 19 chr9 90917764 90917945 -33158227 + MTD LTR MaLR 7 191 -228 5 1278 413 19 0 18 chr9 90917945 90918000 -33158172 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1278 1259 258 102 19 chr9 90918000 90918190 -33157982 + MTD LTR MaLR 192 409 -10 5 1278 357 349 91 30 chr9 90918334 90918515 -33157657 + Cheshire DNA MER1_type 2 195 -2225 5 1278 1921 217 39 17 chr9 90918515 90918577 -33157595 + MTC LTR MaLR 1 62 -359 6 1278 357 24 0 0 chr9 90918577 90918619 -33157553 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 6 1278 1921 217 39 17 chr9 90918619 90918968 -33157204 + MTC LTR MaLR 63 419 -2 6 1278 357 349 91 30 chr9 90918968 90919049 -33157123 + Cheshire DNA MER1_type 196 280 -2140 5 1278 4673 151 13 20 chr9 90919896 90920730 -33155442 + L1_Mm LINE L1 3191 4018 -1865 6 1278 1030 216 163 30 chr9 90920834 90921012 -33155160 + RMER17C LTR ERVK 1 220 -190 6 1278 417 20 0 0 chr9 90921012 90921062 -33155110 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1278 1030 216 163 30 chr9 90921062 90921245 -33154927 + RMER17C LTR ERVK 221 410 0 6 1278 3588 213 83 7 chr9 90921270 90922113 -33154059 + Lx9 LINE L1 6737 7643 -1 6 1278 237 348 9 9 chr9 90922576 90922692 -33153480 + Lx7 LINE L1 6918 7033 -663 6 1278 4236 105 16 14 chr9 90923282 90923927 -33152245 - Lx2 LINE L1 -578 6419 5774 6 1278 3343 126 58 4 chr9 90923927 90924462 -33151710 + Lx2 LINE L1 6429 6992 -5 6 1278 198 135 0 0 chr9 90924464 90924485 -33151687 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 6 1278 1200 61 0 0 chr9 90924485 90924633 -33151539 + B1_Mus1 SINE Alu 1 148 0 6 1278 198 135 0 0 chr9 90924633 90924648 -33151524 + (TAAAA)n Simple_repeat Simple_repeat 1 15 0 6 1278 307 260 32 45 chr9 90925205 90925319 -33150853 + Lx9 LINE L1 7409 7520 -124 6 1278 483 73 0 0 chr9 90925319 90925387 -33150785 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1278 307 260 32 45 chr9 90925387 90925429 -33150743 + Lx9 LINE L1 7521 7563 -81 6 1278 450 205 12 0 chr9 90925435 90925518 -33150654 - B1_Mur4 SINE Alu -65 85 2 6 1278 366 195 0 0 chr9 90925985 90926062 -33150110 + T-rich Low_complexity Low_complexity 1 77 0 6 1278 26 0 0 0 chr9 90926611 90926637 -33149535 + AT_rich Low_complexity Low_complexity 1 26 0 6 1278 971 309 5 0 chr9 90927584 90927804 -33148368 + RMER1C Other Other 656 876 -466 6 1278 13337 72 5 11 chr9 90927809 90930343 -33145829 - L1Md_F2 LINE L1 -2 6580 4065 6 1278 1741 176 52 29 chr9 90930343 90930688 -33145484 + RMER1C Other Other 863 1215 -127 6 1278 245 203 94 0 chr9 90930688 90930752 -33145420 + CT-rich Low_complexity Low_complexity 1 70 0 6 1278 468 248 70 0 chr9 90930753 90930882 -33145290 + RMER1C Other Other 1203 1340 -2 6 1278 4173 173 30 17 chr9 90931519 90932297 -33143875 + Lx4B LINE L1 6266 7053 -5 6 1278 1569 271 52 36 chr9 90932335 90932840 -33143332 - Lx6 LINE L1 -4 7456 6944 6 1278 594 28 0 0 chr9 90932913 90932985 -33143187 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1278 321 47 0 0 chr9 90932985 90933028 -33143144 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1278 380 340 36 71 chr9 90933735 90933960 -33142212 - MIR SINE MIR -44 218 2 6 1278 702 113 0 0 chr9 90936633 90936757 -33139415 + (GA)n Simple_repeat Simple_repeat 1 124 0 6 1278 781 225 50 82 chr9 90936824 90937167 -33139005 - Lx7 LINE L1 0 7696 7365 6 1278 258 122 0 0 chr9 90937209 90937250 -33138922 - Lx7 LINE L1 -339 7357 7317 6 1278 813 256 118 25 chr9 90937396 90937844 -33138328 - Lx7 LINE L1 -403 7293 6804 6 1278 192 111 0 0 chr9 90937883 90937919 -33138253 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 1278 183 42 0 0 chr9 90937930 90937954 -33138218 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1278 272 333 56 37 chr9 90938061 90938223 -33137949 + MER82 DNA MER2_type 116 280 -373 6 1278 205 163 41 0 chr9 90938876 90938925 -33137247 + T-rich Low_complexity Low_complexity 3 53 0 6 1278 1824 271 60 16 chr9 90938927 90939430 -33136742 - Lx8 LINE L1 -353 7120 6596 6 1278 200 182 0 0 chr9 90940048 90940081 -33136091 + (TTG)n Simple_repeat Simple_repeat 3 35 0 6 1278 22 0 0 0 chr9 90940092 90940114 -33136058 + AT_rich Low_complexity Low_complexity 1 22 0 6 1278 1057 314 106 0 chr9 90940125 90940494 -33135678 - Lx5 LINE L1 -19 7031 6624 6 1278 1881 288 138 7 chr9 90941468 90942202 -33133970 + Tigger1 DNA MER2_type 20 849 -1569 6 1278 1804 208 89 16 chr9 90942236 90942618 -33133554 - MTD LTR MaLR 0 419 10 6 1278 1033 118 181 11 chr9 90942767 90942955 -33133217 + URR1B DNA MER1_type 1 220 -5 6 1278 1887 261 124 85 chr9 90942965 90943481 -33132691 + Tigger1 DNA MER2_type 1020 1585 -833 6 1278 625 222 84 40 chr9 90943481 90943683 -33132489 + B3 SINE B2 1 211 -5 6 1278 1887 261 124 85 chr9 90943683 90943991 -33132181 + Tigger1 DNA MER2_type 1586 1876 -542 6 1278 1206 340 62 29 chr9 90944630 90945180 -33130992 + Lx8 LINE L1 6134 6705 -768 6 1278 282 29 0 0 chr9 90945180 90945215 -33130957 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1278 1206 329 132 53 chr9 90945215 90945336 -33130836 + Lx8 LINE L1 6696 6889 -584 6 1278 1069 102 114 0 chr9 90945336 90945502 -33130670 + B2_Mm2 SINE B2 3 187 -8 6 1278 937 340 107 52 chr9 90945502 90946051 -33130121 + Lx8 LINE L1 6879 7443 -30 6 1278 962 293 72 28 chr9 90946111 90946747 -33129425 + L1MA4 LINE L1 5296 5925 -1548 6 1278 243 317 88 20 chr9 90948115 90948263 -33127909 - RMER15 LTR ERVL -11 564 407 6 1278 220 339 119 21 chr9 90949076 90949269 -33126903 + L2 LINE L2 1563 1774 -1645 6 1278 624 329 153 57 chr9 90949384 90949787 -33126385 + L2 LINE L2 1973 2385 -1034 6 1278 336 48 0 0 chr9 90949787 90949829 -33126343 + (TTA)n Simple_repeat Simple_repeat 1 42 0 6 1278 624 329 153 57 chr9 90949829 90950367 -33125805 + L2 LINE L2 2386 3003 -416 6 1278 569 371 127 14 chr9 90950526 90950944 -33125228 - MLT1J LTR MaLR -43 469 5 6 1278 3130 38 36 0 chr9 90951785 90952177 -33123995 + L1Md_F3 LINE L1 6160 6565 -19 6 1278 3500 152 5 7 chr9 90952364 90952947 -33123225 + Lx3B LINE L1 6388 6969 -4 6 1278 222 213 0 60 chr9 90952999 90953033 -33123139 + polypyrimidine Low_complexity Low_complexity 16 48 0 6 1278 492 18 0 0 chr9 90953033 90953090 -33123082 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 6 1278 1102 73 0 0 chr9 90953090 90953227 -33122945 - B1_Mus1 SINE Alu -10 138 2 6 1278 222 213 0 60 chr9 90953227 90953241 -33122931 + polypyrimidine Low_complexity Low_complexity 3 15 0 6 1278 229 286 24 22 chr9 90954351 90954446 -33121726 + MLT1A0 LTR MaLR 1 96 -278 6 1278 742 306 12 0 chr9 90954523 90954696 -33121476 - MTE2b LTR MaLR -204 175 1 6 1278 282 281 66 0 chr9 90954696 90954787 -33121385 + ID4_ SINE ID 3 107 -45 6 1278 404 318 84 0 chr9 90954877 90954984 -33121188 + RSINE1 SINE B4 38 153 -12 6 1278 645 49 0 0 chr9 90954984 90955065 -33121107 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 6 1278 376 245 30 114 chr9 90955589 90955755 -33120417 - LTR81B LTR ERV1? -1071 322 171 6 1278 427 302 86 82 chr9 90956172 90956417 -33119755 - LTR31 LTR ERV1 -10 609 364 6 1278 6150 178 50 25 chr9 90956481 90957733 -33118439 + Lx3C LINE L1 5691 6973 -3 6 1278 372 227 0 0 chr9 90957893 90957982 -33118190 + MTE2b LTR MaLR 1 89 -290 6 1278 5244 115 37 10 chr9 90957982 90959203 -33116969 - Lx2 LINE L1 -562 6435 5183 6 1278 390 223 14 29 chr9 90959262 90959374 -33116798 + MTE2b LTR MaLR 247 357 -2 6 1278 363 167 0 0 chr9 90959859 90959925 -33116247 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1278 1652 176 0 16 chr9 90959925 90959937 -33116235 + L1_Mm LINE L1 4909 4920 -963 6 1278 3375 106 71 17 chr9 90959937 90960474 -33115698 - Lx LINE L1 -16 6638 6073 6 1278 1652 176 0 16 chr9 90960474 90960768 -33115404 + L1_Mm LINE L1 4921 5209 -674 6 1278 927 288 111 33 chr9 90960773 90961228 -33114944 + RMER5 LTR ERV1 1 533 -1 6 1278 294 143 0 0 chr9 90961897 90961946 -33114226 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1278 518 43 0 14 chr9 90961946 90962016 -33114156 + (GA)n Simple_repeat Simple_repeat 1 69 0 6 1278 485 262 90 12 chr9 90962540 90962706 -33113466 + Lx6 LINE L1 6867 7045 -415 6 1278 293 174 0 14 chr9 90963720 90963790 -33112382 + GA-rich Low_complexity Low_complexity 2 70 0 6 1279 1149 160 56 9 chr9 90965586 90965800 -33110372 + URR1B DNA MER1_type 2 225 0 6 1279 21 71 0 0 chr9 90966115 90966157 -33110015 + AT_rich Low_complexity Low_complexity 1 42 0 6 1279 383 317 87 31 chr9 90966215 90966342 -33109830 + RSINE1 SINE B4 18 151 -14 6 1279 255 125 0 0 chr9 90966342 90966382 -33109790 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 6 1279 654 208 165 45 chr9 90966399 90966575 -33109597 + B3A SINE B2 2 198 0 6 1279 24 32 0 0 chr9 90966612 90966643 -33109529 + AT_rich Low_complexity Low_complexity 1 31 0 6 1279 206 245 0 20 chr9 90966937 90966987 -33109185 + GA-rich Low_complexity Low_complexity 2 50 0 6 1279 459 0 0 0 chr9 90967989 90968040 -33108132 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1279 306 0 0 0 chr9 90968400 90968434 -33107738 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1279 21 0 0 0 chr9 90968584 90968605 -33107567 + AT_rich Low_complexity Low_complexity 1 21 0 6 1279 210 156 0 0 chr9 90971105 90971150 -33105022 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1279 285 118 0 0 chr9 90972596 90972647 -33103525 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1279 180 0 0 0 chr9 90974623 90974643 -33101529 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1279 398 178 0 11 chr9 90974776 90974867 -33101305 + GA-rich Low_complexity Low_complexity 4 93 0 6 1279 1979 67 0 18 chr9 90974926 90975201 -33100971 + L1Md_F3 LINE L1 6314 6583 -1 6 1279 831 256 74 58 chr9 90975247 90975504 -33100668 - MTE-int LTR MaLR -163 1417 1157 6 1279 1356 282 58 33 chr9 90976313 90976670 -33099502 - MTE-int LTR MaLR -522 1058 703 6 1279 3372 35 4 128 chr9 90976670 90977168 -33099004 - RLTR10C LTR ERVK 0 436 1 6 1279 1356 281 60 30 chr9 90977168 90977260 -33098912 - MTE-int LTR MaLR -878 702 610 6 1279 247 349 49 9 chr9 90978341 90978498 -33097674 + MIR SINE MIR 37 195 -73 6 1279 411 73 0 0 chr9 90980394 90980449 -33095723 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1279 870 266 80 42 chr9 90980634 90980920 -33095252 + RMER1B Other Other 65 361 -705 6 1279 1164 279 63 25 chr9 90980932 90981248 -33094924 + RMER1B Other Other 152 479 -587 6 1279 880 285 15 15 chr9 90981253 90981269 -33094903 + RMER1A Other Other 227 243 -787 6 1279 369 75 0 0 chr9 90981269 90981322 -33094850 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1279 2219 212 199 15 chr9 90981322 90981964 -33094208 + RMER1B Other Other 244 1066 0 6 1279 23 0 0 0 chr9 90982231 90982254 -33093918 + AT_rich Low_complexity Low_complexity 1 23 0 6 1279 24 67 0 0 chr9 90982545 90982590 -33093582 + AT_rich Low_complexity Low_complexity 1 45 0 6 1279 581 51 30 10 chr9 90982939 90983038 -33093134 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 6 1279 216 0 0 0 chr9 90983104 90983128 -33093044 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 6 1279 201 197 0 0 chr9 90985044 90985105 -33091067 + A-rich Low_complexity Low_complexity 1 61 0 6 1279 192 97 0 0 chr9 90985548 90985579 -33090593 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1279 641 50 20 10 chr9 90985579 90985679 -33090493 - L1_Mus3 LINE L1 -14 6624 6524 7 1279 767 289 184 9 chr9 90986325 90986859 -33089313 + L1MB3 LINE L1 5505 6131 -52 7 1279 299 230 178 10 chr9 90987173 90987274 -33088898 + MER63D DNA AcHobo 807 924 -137 7 1279 385 374 180 9 chr9 90987405 90987750 -33088422 + Arthur1 DNA Tip100 276 679 -3268 7 1279 261 264 74 50 chr9 90987751 90988063 -33088109 + L1MD LINE L1 5529 5848 -2147 7 1279 1222 141 53 0 chr9 90988988 90989194 -33086978 - Lx2 LINE L1 -6 6991 6775 7 1279 10813 159 36 3 chr9 90989194 90991882 -33084290 - Lx2 LINE L1 -354 6643 3856 7 1279 192 225 25 0 chr9 90993441 90993481 -33082691 - L3 LINE CR1 -1427 3062 3022 7 1279 14213 99 28 23 chr9 90993495 90995936 -33080236 - Lx2 LINE L1 -2007 3879 1427 7 1279 24 0 0 0 chr9 90997706 90997730 -33078442 + AT_rich Low_complexity Low_complexity 1 24 0 7 1279 895 237 63 45 chr9 90997800 90998132 -33078040 - Lx7 LINE L1 -2 7694 7357 7 1279 505 141 20 0 chr9 90998136 90998235 -33077937 + GA-rich Low_complexity Low_complexity 3 103 0 7 1279 256 244 77 0 chr9 90998252 90998330 -33077842 - Lx7 LINE L1 -314 7382 7299 7 1279 4257 208 82 23 chr9 90998515 90999995 -33076177 - Lx7 LINE L1 -1052 6644 5075 7 1279 29 28 0 0 chr9 91000555 91000591 -33075581 + AT_rich Low_complexity Low_complexity 1 36 0 1 1279 231 61 0 0 chr9 91000731 91000764 -33075408 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1279 181 0 0 65 chr9 91001146 91001177 -33074995 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1279 930 259 52 28 chr9 91001409 91001964 -33074208 + L1_Mur3 LINE L1 1210 1782 -4101 4 1279 289 109 18 0 chr9 91001963 91002018 -33074154 - Lx6 LINE L1 0 7460 7405 5 1279 468 230 8 31 chr9 91002019 91002149 -33074023 + L1_Mur3 LINE L1 2443 2569 -3311 4 1279 210 185 19 0 chr9 91002149 91002203 -33073969 + A-rich Low_complexity Low_complexity 6 60 0 6 1279 402 21 0 0 chr9 91002283 91002330 -33073842 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1279 566 280 112 58 chr9 91002718 91003252 -33072920 + L1_Mur3 LINE L1 2638 3200 -2680 4 1279 588 292 6 17 chr9 91003257 91003431 -33072741 + Lx8 LINE L1 6319 6490 -983 8 1279 418 141 14 14 chr9 91003432 91003504 -33072668 + ORR1B1 LTR MaLR 1 72 -322 9 1279 2771 47 24 0 chr9 91003504 91003844 -33072328 - L1Md_F2 LINE L1 -420 6162 5815 1 1279 3089 75 0 9 chr9 91003844 91004263 -33071909 + L1Md_F2 LINE L1 6151 6565 -17 1 1279 1097 152 38 19 chr9 91004274 91004540 -33071632 + ORR1B1 LTR MaLR 76 394 0 9 1279 791 320 29 44 chr9 91004549 91004892 -33071280 + Lx8 LINE L1 6496 6833 -640 8 1279 1020 311 58 9 chr9 91004987 91005334 -33070838 + Lx8 LINE L1 6857 7220 -253 8 1279 211 98 0 56 chr9 91005337 91005391 -33070781 + (TTG)n Simple_repeat Simple_repeat 2 52 0 1 1279 367 159 70 47 chr9 91005428 91005514 -33070658 + RMER6B LTR ERVK 24 111 -350 1 1279 1801 138 32 67 chr9 91005877 91006218 -33069954 - ORR1A4 LTR MaLR 0 329 1 1 1279 600 303 36 6 chr9 91007110 91007276 -33068896 - B3A SINE B2 -25 173 3 1 1279 3409 210 7 0 chr9 91007663 91008267 -33067905 + Lx5 LINE L1 6371 6978 -72 1 1279 307 309 33 93 chr9 91008493 91008577 -33067595 + B4 SINE B4 2 79 -213 1 1279 2723 92 23 3 chr9 91008577 91008967 -33067205 + MTB LTR MaLR 3 400 0 1 1279 307 331 34 94 chr9 91008967 91009113 -33067059 + B4 SINE B4 80 218 -74 1 1279 1172 139 0 5 chr9 91009243 91009431 -33066741 - B2_Mm2 SINE B2 -7 188 2 1 1279 446 279 91 9 chr9 91009602 91009899 -33066273 - L1MA6 LINE L1 0 6300 5968 1 1279 24 53 0 0 chr9 91011622 91011660 -33064512 + AT_rich Low_complexity Low_complexity 1 38 0 2 1279 240 346 103 22 chr9 91011931 91012067 -33064105 + RSINE1 SINE B4 3 149 -16 2 1279 456 51 0 0 chr9 91012072 91012131 -33064041 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1279 558 223 57 14 chr9 91012192 91012333 -33063839 + Lx4B LINE L1 6893 7039 -19 2 1279 231 103 0 0 chr9 91012354 91012393 -33063779 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2 1279 234 0 0 0 chr9 91012516 91012542 -33063630 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1279 314 238 58 23 chr9 91012838 91012924 -33063248 + MTEb LTR MaLR 262 350 -29 2 1279 4764 55 0 5 chr9 91012924 91013528 -33062644 + L1Md_F2 LINE L1 5982 6582 0 2 1279 281 228 26 9 chr9 91013529 91013644 -33062528 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 1279 183 184 0 0 chr9 91014948 91014986 -33061186 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1279 24 53 0 0 chr9 91015265 91015303 -33060869 + AT_rich Low_complexity Low_complexity 1 38 0 3 1279 841 238 28 37 chr9 91015333 91015551 -33060621 - B3 SINE B2 0 216 1 3 1279 631 248 8 0 chr9 91015660 91015785 -33060387 - B3 SINE B2 -90 126 1 3 1279 21 36 0 0 chr9 91015797 91015825 -33060347 + AT_rich Low_complexity Low_complexity 1 28 0 3 1279 607 282 159 18 chr9 91016287 91016514 -33059658 + B4A SINE B4 34 292 0 3 1279 294 254 261 0 chr9 91016562 91016692 -33059480 + Tigger7 DNA MER2_type 2319 2482 -9 3 1279 217 351 13 0 chr9 91016720 91016797 -33059375 + GA-rich Low_complexity Low_complexity 4 81 0 3 1279 1998 136 0 20 chr9 91018287 91018633 -33057539 + Lx LINE L1 6312 6650 -4 3 1279 25 31 0 0 chr9 91018819 91018851 -33057321 + AT_rich Low_complexity Low_complexity 1 32 0 3 1279 779 291 25 25 chr9 91018891 91019095 -33057077 - ID_B1 SINE B4 0 224 21 3 1279 250 280 17 17 chr9 91019977 91020097 -33056075 - Lx2B LINE L1 0 7000 6881 4 1279 792 153 0 0 chr9 91020304 91020441 -33055731 + (TA)n Simple_repeat Simple_repeat 1 137 0 4 1279 219 103 0 0 chr9 91022382 91022421 -33053751 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1279 182 37 0 36 chr9 91023339 91023367 -33052805 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1279 483 18 0 0 chr9 91024242 91024298 -33051874 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1279 207 0 0 0 chr9 91024298 91024320 -33051852 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1279 32 43 0 0 chr9 91024328 91024374 -33051798 + AT_rich Low_complexity Low_complexity 1 46 0 4 1279 306 273 125 59 chr9 91025896 91026048 -33050124 + HAL1-3A_ME LINE L1 2277 2438 -420 4 1279 240 57 0 0 chr9 91028139 91028174 -33047998 + Lx4A LINE L1 7019 7053 -5 4 1279 275 0 0 28 chr9 91028174 91028210 -33047962 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 1279 1106 144 124 5 chr9 91029260 91029462 -33046710 - URR1A DNA MER1_type 0 226 1 5 1279 316 245 149 0 chr9 91029953 91030047 -33046125 + B3 SINE B2 1 108 -108 5 1279 2900 182 0 38 chr9 91030047 91030596 -33045576 + RMER1B Other Other 402 929 -137 5 1279 217 167 77 77 chr9 91030816 91030868 -33045304 - ID4 SINE ID -29 54 3 5 1279 477 294 29 0 chr9 91030868 91031004 -33045168 - MER3 DNA MER1_type -69 140 1 5 1279 435 38 0 0 chr9 91031534 91031587 -33044585 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1279 261 319 71 110 chr9 91031945 91031990 -33044182 + ID SINE ID 50 89 -135 5 1279 362 228 132 47 chr9 91031990 91032096 -33044076 + PB1D10 SINE Alu 3 117 0 5 1279 2345 277 153 36 chr9 91032156 91033443 -33042729 + Lx9 LINE L1 5781 7218 -426 5 1279 584 246 8 0 chr9 91033441 91033563 -33042609 + Lx9 LINE L1 6605 6727 -917 5 1279 3835 192 54 5 chr9 91033581 91034391 -33041781 + Lx9 LINE L1 6786 7635 -9 5 1279 434 274 105 17 chr9 91034774 91034994 -33041178 - Charlie8 DNA MER1_type -2199 229 3 6 1279 192 135 0 0 chr9 91035205 91035242 -33040930 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1279 209 344 0 31 chr9 91037485 91037581 -33038591 + MER5B DNA MER1_type 86 178 0 6 1279 2873 169 72 17 chr9 91038526 91039050 -33037122 + RMER4B LTR ERVK 17 569 -16 6 1279 2397 187 178 11 chr9 91039057 91039586 -33036586 + RMER20B LTR ERVK 11 627 0 6 1279 200 176 0 0 chr9 91040741 91040775 -33035397 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 6 1279 427 253 54 28 chr9 91040776 91040923 -33035249 - Lx4B LINE L1 -50 7008 6754 6 1279 486 0 0 0 chr9 91041588 91041642 -33034530 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 6 1279 606 302 55 0 chr9 91042691 91042873 -33033299 - B3A SINE B2 -2 196 5 6 1279 243 360 82 31 chr9 91042937 91043132 -33033040 - MIR SINE MIR -43 219 15 6 1279 640 294 161 14 chr9 91043702 91043981 -33032191 + Lx9 LINE L1 6883 7330 -314 7 1279 284 272 97 34 chr9 91044022 91044197 -33031975 + Lx8 LINE L1 7281 7466 -7 7 1279 663 269 98 11 chr9 91044229 91044413 -33031759 + B3 SINE B2 3 202 -14 7 1279 725 207 20 7 chr9 91045218 91045364 -33030808 - B1_Mur4 SINE Alu -1 149 2 7 1279 1270 7 0 0 chr9 91045554 91045704 -33030468 - L1Md_A LINE L1 0 6582 6433 7 1279 225 309 79 7 chr9 91045942 91046082 -33030090 + Lx8 LINE L1 927 1076 -6532 7 1279 225 333 0 0 chr9 91046145 91046250 -33029922 + L1_Rod LINE L1 1210 1314 -4533 7 1279 1094 82 0 0 chr9 91046251 91046398 -33029774 + B1_Mus1 SINE Alu 2 148 0 7 1279 465 250 33 22 chr9 91046442 91046693 -33029479 + Lx8 LINE L1 5710 5971 -1673 7 1279 216 67 0 0 chr9 91047113 91047143 -33029029 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1279 2641 300 110 11 chr9 91047499 91048521 -33027651 + Lx8 LINE L1 6189 7311 -162 7 1279 1254 242 91 0 chr9 91048565 91048829 -33027343 + MTD LTR MaLR 95 382 -37 7 1279 197 186 34 0 chr9 91048873 91048932 -33027240 + GA-rich Low_complexity Low_complexity 1 61 0 8 1279 228 288 15 29 chr9 91048979 91049115 -33027057 + Lx8 LINE L1 7338 7471 -2 7 1279 4112 66 0 0 chr9 91049159 91049677 -33026495 - L1_Mus1 LINE L1 -1 6566 6049 8 1279 4422 199 36 16 chr9 91049709 91050561 -33025611 + Lx5 LINE L1 6182 7050 0 8 1279 357 325 47 18 chr9 91051024 91051193 -33024979 + MER58A DNA MER1_type 47 220 -4 8 1279 912 166 65 0 chr9 91051813 91051982 -33024190 - URR1A DNA MER1_type -1 225 46 8 1279 2948 78 27 0 chr9 91052629 91053039 -33023133 + BGLII LTR ERVK 1 421 0 8 1279 732 355 20 36 chr9 91054064 91054508 -33021664 + Lx8 LINE L1 6884 7320 -153 8 1279 533 42 14 0 chr9 91054521 91054593 -33021579 + (GA)n Simple_repeat Simple_repeat 2 74 0 8 1279 23 33 0 0 chr9 91054859 91054889 -33021283 + AT_rich Low_complexity Low_complexity 1 30 0 8 1279 839 227 87 76 chr9 91054927 91055154 -33021018 - Lx7 LINE L1 0 7696 7462 8 1279 1219 34 0 7 chr9 91055154 91055300 -33020872 + B1_Mm SINE Alu 1 145 -2 9 1279 5015 219 116 11 chr9 91055300 91057013 -33019159 - Lx7 LINE L1 -235 7461 5355 8 1279 2831 3 0 6 chr9 91057013 91057334 -33018838 - L1Md_T LINE L1 0 6582 6264 9 1279 1067 227 279 39 chr9 91057334 91057450 -33018722 - Lx7 LINE L1 -523 5354 5239 8 1279 3112 127 46 2 chr9 91057614 91058110 -33018062 - Lx2 LINE L1 0 6997 6480 9 1279 3763 161 54 4 chr9 91058283 91058621 -33017551 - RMER6D LTR ERVK 0 720 354 9 1279 357 24 0 0 chr9 91058621 91058663 -33017509 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1279 3763 161 54 4 chr9 91058663 91059010 -33017162 - RMER6D LTR ERVK -367 353 2 9 1279 192 40 0 0 chr9 91059745 91059770 -33016402 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 9 1279 547 265 12 12 chr9 91059770 91059942 -33016230 - Lx4B LINE L1 -21 7037 6866 9 1279 8183 2 0 0 chr9 91059991 91060936 -33015236 - L1Md_A LINE L1 0 6582 5638 9 1279 2819 202 31 7 chr9 91060940 91061522 -33014650 - Lx4B LINE L1 -308 6750 6155 9 1279 5309 142 57 11 chr9 91061549 91062440 -33013732 - Lx4A LINE L1 -11 7047 6116 9 1279 435 162 0 0 chr9 91063642 91063722 -33012450 + (TA)n Simple_repeat Simple_repeat 2 81 0 9 1279 1190 259 76 45 chr9 91063760 91064311 -33011861 - Lx9 LINE L1 -128 7516 6949 1 1279 711 186 21 35 chr9 91064359 91064504 -33011668 + RLTR15 LTR ERVK 1 143 -216 1 1279 583 215 86 25 chr9 91064761 91064923 -33011249 - ORR1C2 LTR MaLR -62 322 151 1 1279 23 0 0 0 chr9 91064967 91064990 -33011182 + AT_rich Low_complexity Low_complexity 1 23 0 1 1279 890 236 40 81 chr9 91065005 91065083 -33011089 - RLTR20B3 LTR ERVK -58 519 458 1 1279 701 104 7 22 chr9 91065083 91065220 -33010952 - L1Md_F2 LINE L1 0 6582 6448 1 1279 890 215 47 76 chr9 91065220 91065608 -33010564 - RLTR20B3 LTR ERVK -120 457 1 1 1279 1655 134 18 0 chr9 91065710 91065986 -33010186 + Lx5 LINE L1 5593 5873 -1177 1 1279 348 275 169 40 chr9 91065995 91066143 -33010029 - ORR1C2 LTR MaLR -207 167 1 1 1279 304 276 132 16 chr9 91066709 91066838 -33009334 + Charlie1b DNA MER1_type 167 310 -213 1 1279 1356 227 27 21 chr9 91066853 91067186 -33008986 + L1VL2 LINE L1 65 399 -5936 1 1279 15394 166 25 62 chr9 91067223 91069057 -33007115 + L1VL2 LINE L1 308 2115 -3768 1 1279 906 50 16 8 chr9 91069057 91069179 -33006993 - B1_Mm SINE Alu 0 147 25 1 1279 15394 166 25 62 chr9 91069179 91071758 -33004414 + L1VL2 LINE L1 2116 4660 -1223 1 1279 5709 117 1 5 chr9 91071758 91072593 -33003579 + Lx LINE L1 5822 6653 -1 1 1279 15394 163 22 63 chr9 91072593 91072608 -33003564 + L1VL2 LINE L1 4661 4675 -1208 1 1279 1026 281 95 45 chr9 91072750 91073262 -33002910 - Lx6 LINE L1 -59 7401 6488 1 1279 892 249 48 23 chr9 91073292 91073606 -33002566 - Lx6 LINE L1 -719 6331 5985 1 1279 22 35 0 0 chr9 91073680 91073709 -33002463 + AT_rich Low_complexity Low_complexity 1 29 0 1 1279 204 122 0 0 chr9 91073965 91074006 -33002166 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1279 468 0 0 0 chr9 91074058 91074110 -33002062 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1279 264 100 0 0 chr9 91074419 91074459 -33001713 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1279 1430 276 80 32 chr9 91074768 91075390 -33000782 - Lx8 LINE L1 -9 7464 6813 1 1279 21 0 0 0 chr9 91075399 91075420 -33000752 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 1780 212 170 28 chr9 91075674 91076097 -33000075 + RMER19C LTR ERVK 1 483 -128 1 1279 6894 80 3 23 chr9 91076329 91077331 -32998841 - L1Md_F2 LINE L1 -13 6569 5588 1 1279 4331 149 49 38 chr9 91077331 91078769 -32997403 - L1Md_F LINE L1 -4204 1679 232 1 1279 821 175 23 6 chr9 91078769 91078928 -32997244 + RMER19C LTR ERVK 467 611 0 1 1279 504 0 0 0 chr9 91079354 91079410 -32996762 + (TAAAA)n Simple_repeat Simple_repeat 4 59 0 1 1279 606 322 0 7 chr9 91080054 91080198 -32995974 + RSINE1 SINE B4 23 165 0 1 1279 555 117 0 0 chr9 91080198 91080301 -32995871 + (GA)n Simple_repeat Simple_repeat 1 103 0 1 1279 27 49 0 0 chr9 91080319 91080360 -32995812 + AT_rich Low_complexity Low_complexity 1 41 0 1 1279 211 360 72 62 chr9 91080702 91081039 -32995133 - L2b LINE L2 -236 3139 2783 1 1279 899 241 32 20 chr9 91081139 91081389 -32994783 - Lx6 LINE L1 -4 7456 7204 1 1279 350 318 18 18 chr9 91081393 91081502 -32994670 - RMER12 LTR ERVK -466 856 748 1 1279 2162 227 50 20 chr9 91081502 91082060 -32994112 - Lx6 LINE L1 -365 7095 6521 1 1279 309 176 0 0 chr9 91082257 91082331 -32993841 + CT-rich Low_complexity Low_complexity 2 75 0 1 1279 2018 304 68 18 chr9 91082338 91083155 -32993017 - Lx9 LINE L1 -458 7186 6329 1 1279 234 0 0 0 chr9 91083620 91083646 -32992526 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1279 863 117 0 0 chr9 91083666 91083786 -32992386 - B2_Mm2 SINE B2 -75 120 1 1 1279 1621 224 215 21 chr9 91084739 91085120 -32991052 - RMER19C LTR ERVK 0 611 179 1 1279 494 30 30 0 chr9 91085120 91085187 -32990985 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 1 1279 1049 75 0 7 chr9 91085189 91085324 -32990848 - B1_Mm SINE Alu -12 135 2 1 1279 1621 224 215 21 chr9 91085324 91085451 -32990721 - RMER19C LTR ERVK -433 178 1 1 1279 297 0 0 0 chr9 91087067 91087100 -32989072 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1279 822 221 0 0 chr9 91087264 91087413 -32988759 + B1_Mur4 SINE Alu 1 149 -1 1 1279 305 59 0 38 chr9 91087419 91087472 -32988700 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 1 1279 3280 50 9 5 chr9 91087511 91087935 -32988237 + L1Md_F3 LINE L1 6158 6583 -1 1 1279 704 237 0 0 chr9 91089515 91089667 -32986505 - L1VL4 LINE L1 -6150 152 1 1 1279 9403 137 19 31 chr9 91089896 91091511 -32984661 + MusHAL1 LINE L1 533 2310 -3573 1 1279 1174 68 0 20 chr9 91091511 91091661 -32984511 - B1_Mus1 SINE Alu 0 148 2 1 1279 9403 157 24 50 chr9 91091661 91092643 -32983529 + MusHAL1 LINE L1 2311 3288 -2595 1 1279 417 109 0 0 chr9 91092710 91092774 -32983398 + (CAAG)n Simple_repeat Simple_repeat 1 64 0 1 1279 930 262 35 31 chr9 91092998 91093286 -32982886 - Lx5 LINE L1 -284 6766 6478 1 1279 1065 135 0 0 chr9 91094162 91094332 -32981840 + L1Md_F LINE L1 274 443 -6076 1 1279 494 232 26 18 chr9 91094529 91094643 -32981529 + PB1D10 SINE Alu 3 117 0 1 1279 340 193 0 19 chr9 91094754 91094829 -32981343 + B1_Mur2 SINE Alu 43 115 -34 1 1280 8901 148 20 2 chr9 91095054 91096689 -32979483 + Lx2A1 LINE L1 3752 5414 -463 1 1280 7402 139 21 6 chr9 91096694 91097905 -32978267 + Lx2A1 LINE L1 5780 7008 0 1 1280 5177 62 16 6 chr9 91097933 91098600 -32977572 + L1Md_F2 LINE L1 5897 6570 -12 1 1280 2132 108 9 6 chr9 91098612 91098930 -32977242 + L1_Mus3 LINE L1 6315 6633 -5 1 1280 2060 123 201 9 chr9 91098964 91099408 -32976764 + Lx3C LINE L1 5688 6216 -760 1 1280 494 290 92 20 chr9 91099406 91099698 -32976474 + L1ME2z LINE L1 5845 6157 -287 1 1280 2464 306 96 27 chr9 91100132 91101339 -32974833 + Lx8 LINE L1 6172 7461 -12 1 1280 30 83 0 0 chr9 91101422 91101494 -32974678 + AT_rich Low_complexity Low_complexity 1 72 0 1 1280 22 35 0 0 chr9 91103235 91103264 -32972908 + AT_rich Low_complexity Low_complexity 1 29 0 1 1280 807 80 14 7 chr9 91103501 91103640 -32972532 + (TG)n Simple_repeat Simple_repeat 2 141 0 1 1280 1139 58 13 0 chr9 91103951 91104106 -32972066 + L1Md_F2 LINE L1 6411 6567 -15 1 1280 768 178 46 16 chr9 91104241 91104435 -32971737 + Lx3A LINE L1 6775 6974 -7 1 1280 389 280 61 33 chr9 91104625 91104839 -32971333 + L1MA4 LINE L1 5719 5938 -362 1 1280 29 0 0 0 chr9 91105143 91105172 -32971000 + AT_rich Low_complexity Low_complexity 1 29 0 1 1280 216 402 10 10 chr9 91105374 91105472 -32970700 + PB1D10 SINE Alu 14 111 -6 1 1280 2383 83 24 3 chr9 91106092 91106432 -32969740 - L1_Mus3 LINE L1 -1 6637 6291 1 1280 304 228 0 0 chr9 91106733 91106790 -32969382 + ID2 SINE ID 2 58 -25 1 1280 978 263 70 11 chr9 91106997 91107270 -32968902 - B4A SINE B4 -2 290 2 1 1280 4155 67 0 0 chr9 91107570 91108089 -32968083 - L1_Mus1 LINE L1 0 6567 6049 1 1280 343 292 98 35 chr9 91108239 91108267 -32967905 - B2_Mm2 SINE B2 -10 185 153 1 1280 315 0 0 0 chr9 91108267 91108302 -32967870 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1280 343 292 98 35 chr9 91108302 91108447 -32967725 - B2_Mm2 SINE B2 -43 152 2 1 1280 225 296 43 167 chr9 91108628 91108766 -32967406 - LTR88c LTR Genie? -561 301 181 1 1280 522 143 0 0 chr9 91109271 91109362 -32966810 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1280 260 349 228 8 chr9 91109372 91109499 -32966673 + RSINE1 SINE B4 3 157 -8 1 1280 450 0 0 0 chr9 91109500 91109550 -32966622 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1280 402 39 0 0 chr9 91109550 91109601 -32966571 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1280 29 47 0 0 chr9 91109636 91109679 -32966493 + AT_rich Low_complexity Low_complexity 1 43 0 1 1280 1243 258 99 43 chr9 91109816 91110302 -32965870 - Lx9 LINE L1 -267 7377 6865 1 1280 34 55 0 0 chr9 91110337 91110392 -32965780 + AT_rich Low_complexity Low_complexity 1 55 0 1 1280 651 239 118 36 chr9 91110399 91110763 -32965409 + Lx9 LINE L1 5013 5406 -441 1 1280 220 70 23 23 chr9 91111424 91111468 -32964704 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1280 819 251 16 25 chr9 91111511 91111764 -32964408 + Lx9 LINE L1 5480 5772 -1872 1 1280 294 345 18 35 chr9 91112151 91112265 -32963907 + Tigger7 DNA MER2_type 1 112 -2379 1 1280 31551 81 1 15 chr9 91112269 91117601 -32958571 + L1Md_F2 LINE L1 331 5585 -298 1 1280 8084 47 1 1 chr9 91117602 91118586 -32957586 + L1Md_F2 LINE L1 5587 6570 -12 1 1280 481 286 119 10 chr9 91118623 91118824 -32957348 + Tigger7 DNA MER2_type 148 370 -2121 1 1280 243 301 27 0 chr9 91118805 91118878 -32957294 + Tigger7 DNA MER2_type 960 1034 -1457 1 1280 1530 242 102 66 chr9 91118929 91119939 -32956233 + RMER1B Other Other 1 1064 -2 1 1280 1485 292 20 48 chr9 91120491 91121154 -32955018 + Lx9 LINE L1 6813 7456 -188 1 1280 785 167 2 0 chr9 91121182 91121600 -32954572 + (TG)n Simple_repeat Simple_repeat 1 419 0 1 1280 615 27 0 0 chr9 91124037 91124110 -32952062 + (TTCTG)n Simple_repeat Simple_repeat 4 76 0 1 1280 29 28 0 0 chr9 91124141 91124177 -32951995 + AT_rich Low_complexity Low_complexity 1 36 0 1 1280 35683 56 3 8 chr9 91124909 91131040 -32945132 - L1Md_F3 LINE L1 -14 6570 482 1 1280 585 129 0 0 chr9 91131060 91131153 -32945019 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1280 37821 6 10 9 chr9 91132270 91133920 -32942252 - L1Md_A LINE L1 0 6582 4916 1 1280 228 183 46 77 chr9 91133920 91133985 -32942187 + RMER20A LTR ERVK 186 248 -268 1 1280 37821 6 10 9 chr9 91133985 91138842 -32937330 - L1Md_A LINE L1 0 4915 7 1 1280 3158 107 6 0 chr9 91139304 91139779 -32936393 - L1_Mur2 LINE L1 -109 5768 5291 1 1280 1084 201 12 12 chr9 91139784 91140026 -32936146 + Lx4A LINE L1 6815 7056 -2 1 1280 22 0 0 0 chr9 91140177 91140199 -32935973 + AT_rich Low_complexity Low_complexity 1 22 0 1 1280 16433 78 8 4 chr9 91140208 91143182 -32932990 - L1Md_F2 LINE L1 -10 6572 3588 1 1280 802 300 41 57 chr9 91143687 91144002 -32932170 + MT2A LTR ERVL 9 318 -215 1 1280 243 0 0 0 chr9 91144009 91144036 -32932136 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1280 493 283 138 21 chr9 91144232 91144557 -32931615 + Lx8 LINE L1 7111 7473 0 1 1280 2847 177 39 0 chr9 91144631 91145189 -32930983 - L1_Mur2 LINE L1 -273 5604 5025 1 1280 6182 119 8 3 chr9 91145184 91146201 -32929971 + MusHAL1 LINE L1 884 1905 -807 1 1280 532 285 38 38 chr9 91146889 91147075 -32929097 + B2_Mm2 SINE B2 1 186 -9 1 1280 252 0 0 0 chr9 91148068 91148096 -32928076 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1280 224 191 0 29 chr9 91148796 91148866 -32927306 + A-rich Low_complexity Low_complexity 3 70 0 1 1280 226 196 0 0 chr9 91149133 91149189 -32926983 - Lx6 LINE L1 -26 7434 7379 2 1280 359 307 50 21 chr9 91149204 91149344 -32926828 - Lx6 LINE L1 -134 7326 7183 2 1280 1211 253 91 79 chr9 91149404 91149890 -32926282 + L1_Rod LINE L1 1699 2242 -3605 2 1280 3312 118 54 43 chr9 91149890 91150449 -32925723 + Lx3B LINE L1 6406 6970 -3 2 1280 1211 253 91 79 chr9 91150449 91150712 -32925460 + L1_Rod LINE L1 2243 2457 -3390 2 1280 3360 237 88 42 chr9 91150750 91151850 -32924322 - L1_Rod LINE L1 -88 5759 4602 2 1280 204 97 0 0 chr9 91151850 91151881 -32924291 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1280 3360 237 88 42 chr9 91151881 91152116 -32924056 - L1_Rod LINE L1 -1246 4601 4363 2 1280 6824 93 7 8 chr9 91152202 91153204 -32922968 - L1_Mus4 LINE L1 -2 6634 5634 2 1280 2632 151 67 2 chr9 91153203 91153599 -32922573 + L1_Mur2 LINE L1 4202 4621 -1256 2 1280 270 56 0 0 chr9 91153599 91153635 -32922537 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2 1280 2632 151 67 2 chr9 91153635 91153748 -32922424 + L1_Mur2 LINE L1 4622 4742 -1135 2 1280 346 257 43 85 chr9 91153746 91154121 -32922051 - L1_Mur3 LINE L1 -4306 1574 1216 2 1280 1007 225 14 22 chr9 91155323 91155546 -32920626 + ID_B1 SINE B4 4 224 0 2 1280 294 359 86 0 chr9 91155580 91155708 -32920464 - B1F1 SINE Alu -8 141 3 2 1280 854 143 7 35 chr9 91155738 91155883 -32920289 - B1_Mm SINE Alu -6 141 1 2 1280 33768 35 1 2 chr9 91156094 91162044 -32914128 + L1Md_T LINE L1 1 5589 -297 2 1280 9025 6 0 0 chr9 91162044 91163040 -32913132 + L1Md_T LINE L1 5590 6585 0 2 1280 956 316 54 19 chr9 91163055 91163780 -32912392 - L1M3 LINE L1 -1547 4593 3844 2 1280 267 31 0 0 chr9 91163805 91163837 -32912335 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1280 423 107 0 0 chr9 91164513 91164588 -32911584 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1280 539 236 143 16 chr9 91164608 91164820 -32911352 - L1M2 LINE L1 -606 5706 5467 2 1280 360 0 0 0 chr9 91164820 91164860 -32911312 + (TTG)n Simple_repeat Simple_repeat 2 41 0 2 1280 539 236 143 16 chr9 91164860 91164961 -32911211 - L1M2 LINE L1 -846 5466 5354 2 1280 2361 197 42 65 chr9 91166186 91166538 -32909634 - Lx4B LINE L1 -1 7057 6614 2 1280 225 0 0 0 chr9 91166538 91166563 -32909609 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1280 2361 142 21 94 chr9 91166563 91166925 -32909247 - Lx4B LINE L1 -443 6615 6265 2 1280 21 0 0 0 chr9 91170743 91170764 -32905408 + AT_rich Low_complexity Low_complexity 1 21 0 2 1280 1683 65 17 9 chr9 91171362 91171593 -32904579 - L1Md_F2 LINE L1 0 6582 6350 2 1280 1045 95 69 12 chr9 91172759 91172919 -32903253 - MTB_Mm LTR MaLR -8 413 245 2 1280 283 148 11 110 chr9 91172922 91173013 -32903159 - MTB_Mm LTR MaLR -142 277 196 2 1280 6370 51 0 0 chr9 91173015 91173800 -32902372 - L1Md_T LINE L1 0 6582 5798 2 1280 8788 9 4 0 chr9 91173800 91175316 -32900856 - L1Md_A LINE L1 -1 6581 5060 2 1280 1208 141 0 29 chr9 91175316 91175521 -32900651 - MTB_Mm LTR MaLR -208 199 1 2 1280 212 200 0 0 chr9 91176260 91176295 -32899877 - MIRc SINE MIR -117 151 117 2 1280 441 0 0 0 chr9 91176887 91176936 -32899236 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1280 703 248 0 8 chr9 91176940 91177070 -32899102 - B3 SINE B2 -53 163 35 2 1280 7953 59 17 0 chr9 91177403 91178438 -32897734 + L1Md_F2 LINE L1 4534 5586 -297 2 1280 7458 71 15 4 chr9 91178438 91179423 -32896749 + L1Md_F2 LINE L1 5587 6582 0 2 1280 1121 133 16 5 chr9 91180070 91180259 -32895913 + B2_Mm2 SINE B2 1 191 -4 2 1280 575 343 91 5 chr9 91180318 91180517 -32895655 + B4 SINE B4 5 220 -72 2 1280 492 18 0 0 chr9 91180522 91180579 -32895593 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1280 2845 60 3 0 chr9 91180737 91181101 -32895071 - L1Md_F2 LINE L1 -446 6136 5772 2 1280 3185 75 7 5 chr9 91181101 91181527 -32894645 + L1_Mus1 LINE L1 6141 6567 0 2 1280 438 219 87 94 chr9 91181536 91181808 -32894364 + MERVL_2A-int LTR ERVL 5412 5719 -42 2 1280 1055 117 0 6 chr9 91181811 91181983 -32894189 + (GAA)n Simple_repeat Simple_repeat 1 171 0 2 1280 553 208 152 0 chr9 91182002 91182180 -32893992 + L1_Mur3 LINE L1 1537 1741 -4139 2 1280 339 269 34 0 chr9 91182184 91182303 -32893869 + Lx7 LINE L1 7574 7696 0 2 1280 1642 268 57 15 chr9 91182323 91182976 -32893196 + L1_Mur3 LINE L1 1756 2435 -3445 2 1280 2769 18 0 0 chr9 91182999 91183327 -32892845 + L1_Mm LINE L1 3254 3581 -2302 2 1280 2750 267 60 27 chr9 91183355 91184521 -32891651 + L1_Mur3 LINE L1 2490 3693 -2187 2 1280 426 289 90 8 chr9 91184638 91184760 -32891412 + B1_Mur2 SINE Alu 3 134 -15 2 1280 1020 103 14 0 chr9 91184817 91184962 -32891210 - B1_Mus1 SINE Alu -1 147 1 2 1280 1647 283 99 14 chr9 91184971 91185545 -32890627 - Lx8 LINE L1 0 7473 6851 2 1280 814 144 22 111 chr9 91185608 91185788 -32890384 - ORR1C1 LTR MaLR -213 165 2 2 1280 1317 42 0 0 chr9 91186588 91186756 -32889416 + (TTGG)n Simple_repeat Simple_repeat 2 169 0 2 1280 5776 61 12 13 chr9 91187013 91187775 -32888397 + L1Md_F2 LINE L1 4826 5586 -297 2 1280 7724 60 2 7 chr9 91187775 91188773 -32887399 + L1Md_F2 LINE L1 5587 6579 -3 2 1280 1937 50 4 0 chr9 91188889 91189130 -32887042 + L1Md_T LINE L1 6340 6581 -1 2 1280 396 0 0 0 chr9 91189235 91189279 -32886893 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1280 302 389 68 8 chr9 91190795 91190927 -32885245 + MIR3 SINE MIR 3 142 -66 2 1280 258 308 0 0 chr9 91191009 91191074 -32885098 - L2a LINE L2 -1 3425 3361 2 1280 23 0 0 0 chr9 91191401 91191424 -32884748 + AT_rich Low_complexity Low_complexity 1 23 0 2 1280 207 0 0 0 chr9 91191853 91191876 -32884296 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1280 204 216 0 0 chr9 91192504 91192541 -32883631 + CT-rich Low_complexity Low_complexity 2 38 0 2 1280 247 368 29 22 chr9 91193242 91193378 -32882794 - MIRc SINE MIR -51 217 81 2 1280 428 261 22 0 chr9 91193509 91193601 -32882571 + B1_Mur4 SINE Alu 1 94 -56 2 1280 436 198 0 0 chr9 91193601 91193702 -32882470 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1280 423 245 153 0 chr9 91193802 91193900 -32882272 + B1_Mur3 SINE Alu 1 113 -36 2 1280 489 167 33 0 chr9 91193913 91194033 -32882139 + GA-rich Low_complexity Low_complexity 2 125 0 2 1280 356 298 119 26 chr9 91194063 91194332 -32881840 + L1ME1 LINE L1 5539 5832 -347 2 1280 303 295 53 1 chr9 91194412 91194505 -32881667 + PB1D10 SINE Alu 15 114 -6 2 1280 1313 89 21 5 chr9 91194694 91194885 -32881287 + B2_Mm2 SINE B2 2 195 0 2 1280 265 275 14 0 chr9 91194961 91195030 -32881142 - B1_Mus1 SINE Alu -65 83 14 2 1280 333 0 0 0 chr9 91195588 91195625 -32880547 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1280 767 291 24 24 chr9 91195642 91195892 -32880280 - B4A SINE B4 -13 279 30 2 1280 204 351 111 65 chr9 91195990 91196206 -32879966 + MIRb SINE MIR 35 260 -8 2 1280 206 262 25 0 chr9 91196368 91196448 -32879724 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 1280 31 26 0 0 chr9 91196671 91196709 -32879463 + AT_rich Low_complexity Low_complexity 1 38 0 2 1280 473 298 64 8 chr9 91197413 91197538 -32878634 + RSINE1 SINE B4 17 148 -17 2 1280 561 30 0 0 chr9 91197542 91197609 -32878563 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1280 785 182 8 0 chr9 91197771 91197903 -32878269 + B1_Mur4 SINE Alu 1 133 -17 2 1280 22 35 0 0 chr9 91198038 91198067 -32878105 + AT_rich Low_complexity Low_complexity 1 29 0 2 1280 209 108 27 0 chr9 91198076 91198113 -32878059 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1280 231 36 0 0 chr9 91198492 91198520 -32877652 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1280 1222 231 137 110 chr9 91198524 91199006 -32877166 + RMER19C LTR ERVK 14 508 -103 2 1280 2835 51 35 5 chr9 91200164 91200538 -32875634 + L1Md_F2 LINE L1 6185 6569 -13 2 1280 237 337 40 59 chr9 91201144 91201228 -32874944 - B1F1 SINE Alu -50 99 17 2 1280 1782 205 59 25 chr9 91201228 91201633 -32874539 + MTD LTR MaLR 1 419 0 2 1280 237 337 40 59 chr9 91201633 91201649 -32874523 - B1F1 SINE Alu -133 16 1 2 1280 915 10 0 0 chr9 91201663 91201767 -32874405 + (TG)n Simple_repeat Simple_repeat 1 104 0 2 1280 389 323 126 12 chr9 91201796 91202050 -32874122 - B4A SINE B4 -8 284 2 2 1280 795 159 27 20 chr9 91202075 91202223 -32873949 + B1_Mur3 SINE Alu 1 149 0 2 1280 276 355 0 21 chr9 91202404 91202499 -32873673 + PB1D10 SINE Alu 22 114 -3 2 1280 675 210 80 0 chr9 91202597 91202735 -32873437 + B1_Mur2 SINE Alu 1 149 0 2 1280 450 0 0 0 chr9 91202739 91202789 -32873383 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2 1280 287 333 0 40 chr9 91202964 91203089 -32873083 - PB1 SINE Alu -6 121 2 2 1280 924 127 84 12 chr9 91203557 91203724 -32872448 + B2_Mm2 SINE B2 2 180 -15 2 1280 410 167 12 0 chr9 91203724 91203808 -32872364 + GA-rich Low_complexity Low_complexity 3 87 0 2 1280 246 273 128 13 chr9 91203951 91204029 -32872143 + RSINE1 SINE B4 62 148 -17 2 1280 310 240 164 39 chr9 91204838 91204942 -32871230 + PB1D10 SINE Alu 9 125 -2 2 1280 3476 31 10 0 chr9 91205071 91205488 -32870684 + L1Md_F2 LINE L1 6133 6553 -29 2 1280 23 0 0 0 chr9 91205687 91205710 -32870462 + AT_rich Low_complexity Low_complexity 1 23 0 2 1280 1181 116 0 0 chr9 91205715 91205879 -32870293 + B2_Mm2 SINE B2 2 165 -30 2 1280 276 130 0 0 chr9 91206145 91206191 -32869981 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1280 24 53 0 0 chr9 91206332 91206370 -32869802 + AT_rich Low_complexity Low_complexity 1 38 0 2 1280 180 0 0 0 chr9 91207496 91207516 -32868656 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1280 460 237 11 0 chr9 91208921 91209014 -32867158 + PB1D10 SINE Alu 22 115 -2 2 1280 223 325 51 25 chr9 91209015 91209094 -32867078 + ID4_ SINE ID 1 81 -2 2 1280 796 243 0 0 chr9 91210878 91211022 -32865150 - B1_Mur2 SINE Alu -4 145 2 2 1280 225 0 0 0 chr9 91211037 91211062 -32865110 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1280 322 364 167 29 chr9 91211388 91212042 -32864130 + L2 LINE L2 2280 3023 -396 2 1280 303 289 77 0 chr9 91212339 91212510 -32863662 + L1MA6 LINE L1 6085 6280 -20 2 1280 21 0 0 0 chr9 91212513 91212534 -32863638 + AT_rich Low_complexity Low_complexity 1 21 0 2 1280 637 210 48 0 chr9 91212534 91212658 -32863514 + B3 SINE B2 1 130 -86 3 1280 29 0 0 0 chr9 91212709 91212738 -32863434 + AT_rich Low_complexity Low_complexity 1 29 0 3 1280 195 114 0 0 chr9 91212782 91212817 -32863355 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 3 1280 183 364 13 13 chr9 91213073 91213151 -32863021 - MER5B DNA MER1_type -52 126 49 3 1280 29 47 0 0 chr9 91213323 91213366 -32862806 + AT_rich Low_complexity Low_complexity 1 43 0 3 1280 184 318 45 15 chr9 91213750 91213817 -32862355 + MIR SINE MIR 58 126 -82 3 1280 234 306 139 22 chr9 91214048 91214185 -32861987 + MIRb SINE MIR 55 207 -61 3 1280 2050 140 35 3 chr9 91214215 91214559 -32861613 - Lx2A1 LINE L1 -2 7006 6652 3 1280 1830 106 4 4 chr9 91214559 91214825 -32861347 + Lx2A1 LINE L1 6323 6588 -420 3 1280 998 77 0 93 chr9 91214975 91215022 -32861150 - L1_Mus2 LINE L1 0 6566 6535 3 1280 3922 62 17 8 chr9 91215022 91215543 -32860629 + L1Md_F2 LINE L1 6057 6582 0 3 1280 998 77 0 93 chr9 91215543 91215667 -32860505 - L1_Mus2 LINE L1 -32 6534 6411 3 1280 1072 323 51 53 chr9 91215931 91216418 -32859754 - Lx8 LINE L1 -160 7313 6828 3 1280 692 238 7 7 chr9 91216896 91217044 -32859128 + B1_Mur1 SINE Alu 2 149 0 3 1280 732 304 54 17 chr9 91217377 91217728 -32858444 + Lx8 LINE L1 7105 7468 -5 3 1280 21 82 0 0 chr9 91217801 91217850 -32858322 + AT_rich Low_complexity Low_complexity 1 49 0 3 1280 693 231 7 22 chr9 91217864 91218001 -32858171 + B1F SINE Alu 12 146 -3 3 1280 363 273 79 1 chr9 91219997 91220173 -32855999 + L1MA8 LINE L1 6115 6309 -3 3 1280 26 74 0 0 chr9 91220182 91220236 -32855936 + AT_rich Low_complexity Low_complexity 1 54 0 3 1280 2055 222 11 185 chr9 91220689 91221429 -32854743 - RMER19C LTR ERVK 0 611 1 3 1280 24 0 0 0 chr9 91221590 91221614 -32854558 + AT_rich Low_complexity Low_complexity 1 24 0 3 1280 425 254 8 66 chr9 91222103 91222225 -32853947 - B1_Mur4 SINE Alu 0 150 36 3 1280 809 263 10 15 chr9 91222620 91222817 -32853355 + B3 SINE B2 9 204 -12 3 1280 32 95 0 0 chr9 91222817 91222912 -32853260 + AT_rich Low_complexity Low_complexity 1 95 0 3 1280 2091 310 62 45 chr9 91222962 91223888 -32852284 + Lx7 LINE L1 6388 7328 -368 3 1280 225 0 0 0 chr9 91223888 91223913 -32852259 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 1280 1532 329 60 68 chr9 91223913 91223941 -32852231 + Lx7 LINE L1 7327 7336 -137 3 1280 468 0 0 0 chr9 91223941 91223993 -32852179 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1280 1532 329 60 68 chr9 91223993 91224132 -32852040 + Lx7 LINE L1 7337 7473 0 3 1280 529 165 0 0 chr9 91224134 91224225 -32851947 - RMER1C Other Other -2 1340 1250 3 1280 23 0 0 0 chr9 91224235 91224258 -32851914 + AT_rich Low_complexity Low_complexity 1 23 0 3 1280 2332 154 173 19 chr9 91224265 91224846 -32851326 - RLTR17 LTR ERVK -18 674 4 3 1280 429 20 0 0 chr9 91224848 91224898 -32851274 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1280 369 109 0 0 chr9 91224935 91224990 -32851182 + (AGGGGG)n Simple_repeat Simple_repeat 5 59 0 3 1280 951 110 6 82 chr9 91224992 91225150 -32851022 - RMER1C Other Other -154 1188 1043 3 1280 327 297 50 25 chr9 91225256 91225377 -32850795 + L1M5 LINE L1 5567 5690 -489 3 1280 22 0 0 0 chr9 91225458 91225480 -32850692 + AT_rich Low_complexity Low_complexity 1 22 0 3 1280 244 186 0 0 chr9 91225929 91225972 -32850200 + L1_Rod LINE L1 820 862 -6746 3 19 1290 185 110 74 chr9 91226009 91226191 -32849981 + L1_Rod LINE L1 1744 1947 -3900 3 1281 570 209 18 0 chr9 91226191 91226301 -32849871 + PB1D9 SINE Alu 3 114 -6 3 1281 1290 192 108 73 chr9 91226301 91226582 -32849590 + L1_Rod LINE L1 1948 2202 -3645 3 1281 2752 109 5 5 chr9 91226582 91226978 -32849194 + MTB LTR MaLR 5 400 0 3 1281 1633 277 67 37 chr9 91226978 91228024 -32848148 + L1_Rod LINE L1 4959 5571 -309 3 1281 246 226 19 9 chr9 91228034 91228141 -32848031 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 1281 552 30 0 0 chr9 91228142 91228208 -32847964 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 1281 1763 304 50 5 chr9 91228208 91228806 -32847366 + Lx8 LINE L1 6233 6857 -616 3 1281 1777 141 3 17 chr9 91228826 91229122 -32847050 - Lx2 LINE L1 0 6997 6706 3 1281 1922 134 0 0 chr9 91229124 91229416 -32846756 + L1_Mur1 LINE L1 4448 4739 -1147 3 1281 287 85 43 0 chr9 91229457 91229504 -32846668 + L1_Mur1 LINE L1 4976 5024 -862 3 1281 250 296 0 0 chr9 91229500 91229571 -32846601 + Lx8 LINE L1 6842 6912 -561 3 1281 714 133 0 8 chr9 91229717 91229838 -32846334 - RMER17C LTR ERVK -9 401 282 3 1281 579 29 0 0 chr9 91229879 91229948 -32846224 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1281 402 121 0 0 chr9 91229948 91230006 -32846166 - RMER17C LTR ERVK -351 59 2 3 1281 2682 146 17 34 chr9 91230066 91230533 -32845639 + RMER6B LTR ERVK 1 459 -2 3 1281 350 301 43 22 chr9 91230767 91230906 -32845266 - ORR1E LTR MaLR -212 147 6 3 1281 1180 174 32 0 chr9 91231082 91231300 -32844872 - URR1B DNA MER1_type 0 225 1 3 1281 1865 202 26 205 chr9 91231715 91232436 -32843736 - RMER19C LTR ERVK 0 611 20 3 1281 1198 48 14 0 chr9 91232519 91232664 -32843508 + B1_Mm SINE Alu 1 147 0 3 1281 282 309 12 0 chr9 91233405 91233489 -32842683 + CT-rich Low_complexity Low_complexity 1 85 0 3 1281 237 269 0 15 chr9 91233548 91233616 -32842556 + L2c LINE L2 3321 3387 0 3 1281 1591 47 0 15 chr9 91234518 91234714 -32841458 + B2_Mm1a SINE B2 1 193 0 3 1281 599 196 220 23 chr9 91235317 91235494 -32840678 - B3 SINE B2 -4 212 1 3 1281 2268 85 28 21 chr9 91235676 91236001 -32840171 - IAPLTR2b LTR ERVK 0 327 1 3 1281 1110 100 6 6 chr9 91236122 91236293 -32839879 + B2_Mm2 SINE B2 15 185 -10 3 1281 9680 153 47 20 chr9 91236298 91236873 -32839299 + Lx LINE L1 4116 4731 -1152 3 1281 3871 73 0 40 chr9 91236873 91237403 -32838769 + L1_Mus2 LINE L1 6058 6566 0 3 1281 9680 122 37 16 chr9 91237403 91239278 -32836894 + Lx LINE L1 4732 6629 -25 3 1281 396 0 0 0 chr9 91239282 91239326 -32836846 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1281 350 238 229 0 chr9 91239353 91239458 -32836714 + B1_Mm SINE Alu 1 129 -18 3 1281 581 227 41 41 chr9 91239473 91239620 -32836552 + RSINE1 SINE B4 2 148 -17 3 1281 433 283 20 61 chr9 91239972 91240119 -32836053 + RSINE1 SINE B4 21 161 -4 3 1281 1218 97 0 0 chr9 91240147 91240322 -32835850 + (GAGAA)n Simple_repeat Simple_repeat 3 177 0 3 1281 34 55 0 0 chr9 91240844 91240899 -32835273 + AT_rich Low_complexity Low_complexity 1 55 0 3 1281 3440 132 33 22 chr9 91240946 91241529 -32834643 + Lx3A LINE L1 6390 6978 -3 3 1281 248 0 31 0 chr9 91241559 91241591 -32834581 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1281 471 252 188 36 chr9 91241591 91241756 -32834416 + B3 SINE B2 27 216 0 3 1281 216 0 0 0 chr9 91242201 91242225 -32833947 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1281 21 0 0 0 chr9 91242271 91242292 -32833880 + AT_rich Low_complexity Low_complexity 1 21 0 3 1281 981 7 0 42 chr9 91243120 91243264 -32832908 + (TCTCCC)n Simple_repeat Simple_repeat 6 143 0 3 1281 396 0 0 0 chr9 91244992 91245036 -32831136 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1281 261 0 0 0 chr9 91246548 91246577 -32829595 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1281 636 14 0 0 chr9 91248299 91248372 -32827800 + (TC)n Simple_repeat Simple_repeat 1 73 0 3 1281 201 129 0 0 chr9 91250778 91250809 -32825363 + (G)n Simple_repeat Simple_repeat 1 31 0 3 1281 27 29 0 0 chr9 91252559 91252593 -32823579 + AT_rich Low_complexity Low_complexity 1 34 0 3 1281 220 70 47 0 chr9 91255844 91255887 -32820285 + (CCCCCT)n Simple_repeat Simple_repeat 3 47 0 3 1281 236 104 0 40 chr9 91256240 91256290 -32819882 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1281 23 0 0 0 chr9 91257551 91257574 -32818598 + GC_rich Low_complexity Low_complexity 1 23 0 3 1281 299 136 0 17 chr9 91259925 91259985 -32816187 + GA-rich Low_complexity Low_complexity 3 61 0 3 1281 746 11 11 0 chr9 91260328 91260419 -32815753 + (TC)n Simple_repeat Simple_repeat 1 92 0 3 1281 226 238 0 0 chr9 91260473 91260515 -32815657 + A-rich Low_complexity Low_complexity 5 46 0 3 1281 22 0 0 0 chr9 91260750 91260772 -32815400 + GC_rich Low_complexity Low_complexity 1 22 0 3 1281 742 110 49 0 chr9 91260972 91261136 -32815036 + CT-rich Low_complexity Low_complexity 1 172 0 3 1281 283 360 8 0 chr9 91261149 91261320 -32814852 + C-rich Low_complexity Low_complexity 1 172 0 3 1281 237 159 0 0 chr9 91261448 91261492 -32814680 + C-rich Low_complexity Low_complexity 1 44 0 3 1281 1302 43 0 0 chr9 91262804 91262965 -32813207 + (TC)n Simple_repeat Simple_repeat 1 161 0 3 1281 465 19 0 0 chr9 91263092 91263146 -32813026 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1281 414 0 0 0 chr9 91264207 91264253 -32811919 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1281 228 35 0 0 chr9 91268182 91268211 -32807961 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 3 1281 206 237 0 0 chr9 91269916 91269954 -32806218 + polypyrimidine Low_complexity Low_complexity 2 39 0 3 1281 189 0 0 0 chr9 91270759 91270780 -32805392 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 1281 435 19 0 0 chr9 91270780 91270831 -32805341 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1281 22 0 0 0 chr9 91270994 91271016 -32805156 + AT_rich Low_complexity Low_complexity 1 22 0 3 1281 507 288 201 0 chr9 91271027 91271211 -32804961 + ID_B1 SINE B4 1 221 -3 3 1281 210 150 0 0 chr9 91271340 91271380 -32804792 + (TTG)n Simple_repeat Simple_repeat 2 41 0 3 1281 778 156 13 0 chr9 91272559 91272713 -32803459 + GA-rich Low_complexity Low_complexity 1 156 0 3 1281 634 12 24 0 chr9 91272954 91273037 -32803135 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 1281 824 46 9 0 chr9 91275824 91275933 -32800239 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 3 1281 226 281 0 0 chr9 91276707 91276771 -32799401 + G-rich Low_complexity Low_complexity 5 68 0 3 1281 39 0 0 0 chr9 91278071 91278110 -32798062 + AT_rich Low_complexity Low_complexity 1 39 0 3 1281 186 43 0 0 chr9 91279527 91279550 -32796622 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1281 276 103 17 33 chr9 91279841 91279901 -32796271 + (CAA)n Simple_repeat Simple_repeat 2 60 0 3 1281 233 244 62 25 chr9 91280791 91280871 -32795301 + ID4 SINE ID 1 83 0 3 1281 225 154 0 0 chr9 91282883 91282922 -32793250 + A-rich Low_complexity Low_complexity 2 40 0 4 1281 195 114 0 0 chr9 91283000 91283035 -32793137 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1281 351 0 0 0 chr9 91285678 91285717 -32790455 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 4 1281 194 0 0 37 chr9 91287409 91287436 -32788736 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1281 489 76 0 0 chr9 91287750 91287816 -32788356 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1281 705 88 0 0 chr9 91289752 91289854 -32786318 + (GGA)n Simple_repeat Simple_repeat 1 102 0 4 1281 189 107 0 0 chr9 91290523 91290551 -32785621 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1281 330 26 0 0 chr9 91290551 91290590 -32785582 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1281 213 94 0 0 chr9 91291183 91291215 -32784957 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1281 978 70 308 0 chr9 91292691 91292834 -32783338 - B2_Mm2 SINE B2 -7 188 2 4 1281 189 74 0 0 chr9 91296968 91296995 -32779177 + (CCCCCT)n Simple_repeat Simple_repeat 6 32 0 4 1281 522 0 0 0 chr9 91297283 91297341 -32778831 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 4 1281 315 0 0 0 chr9 91298453 91298488 -32777684 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1281 224 133 44 0 chr9 91298779 91298824 -32777348 + CT-rich Low_complexity Low_complexity 2 48 0 4 1281 186 171 0 0 chr9 91299506 91299547 -32776625 + T-rich Low_complexity Low_complexity 1 41 0 4 1281 213 189 0 0 chr9 91301604 91301641 -32774531 + CT-rich Low_complexity Low_complexity 2 38 0 4 1281 26 0 0 0 chr9 91301681 91301707 -32774465 + AT_rich Low_complexity Low_complexity 1 26 0 4 1281 225 0 0 0 chr9 91302010 91302035 -32774137 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 4 1281 852 158 67 15 chr9 91302610 91302745 -32773427 - B1_Mur1 SINE Alu -3 146 5 4 1281 342 0 0 0 chr9 91302790 91302828 -32773344 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1281 351 44 0 0 chr9 91302830 91302875 -32773297 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1281 27 0 0 0 chr9 91303333 91303360 -32772812 + AT_rich Low_complexity Low_complexity 1 27 0 4 1281 189 0 0 0 chr9 91306229 91306250 -32769922 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1281 217 308 19 19 chr9 91306984 91307037 -32769135 + ID4_ SINE ID 25 77 -6 4 1281 232 219 24 0 chr9 91306997 91307038 -32769134 + ID SINE ID 38 79 -145 4 1281 23 0 0 0 chr9 91307220 91307243 -32768929 + AT_rich Low_complexity Low_complexity 1 23 0 4 1281 216 371 71 10 chr9 91307292 91307390 -32768782 + B4 SINE B4 80 183 -109 4 1281 429 320 0 0 chr9 91307306 91307406 -32768766 + PB1D10 SINE Alu 8 107 -10 4 1281 58 28 0 0 chr9 91307756 91307828 -32768344 + AT_rich Low_complexity Low_complexity 1 72 0 4 1281 889 209 56 6 chr9 91307839 91307868 -32768304 - B3 SINE B2 -26 190 162 4 1281 375 23 0 0 chr9 91307868 91307912 -32768260 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1281 889 209 56 6 chr9 91307912 91308060 -32768112 - B3 SINE B2 -55 161 5 4 1281 200 283 0 0 chr9 91308839 91308892 -32767280 + GA-rich Low_complexity Low_complexity 4 56 0 4 1281 297 325 18 18 chr9 91309154 91309317 -32766855 + GA-rich Low_complexity Low_complexity 1 163 0 4 1281 29 0 0 0 chr9 91311154 91311183 -32764989 + AT_rich Low_complexity Low_complexity 1 29 0 4 1281 740 75 0 16 chr9 91311604 91311726 -32764446 + (TCTCTG)n Simple_repeat Simple_repeat 3 122 0 4 1281 198 0 0 0 chr9 91311726 91311747 -32764425 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1281 234 62 0 0 chr9 91312454 91312486 -32763686 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 4 1281 389 20 0 20 chr9 91313850 91313901 -32762271 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1281 563 0 15 0 chr9 91313913 91313980 -32762192 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1281 21 57 0 0 chr9 91314305 91314340 -32761832 + AT_rich Low_complexity Low_complexity 1 35 0 4 1281 356 252 47 0 chr9 91314383 91314490 -32761682 + L1MC3 LINE L1 6543 6654 -1131 4 1281 297 109 0 0 chr9 91314534 91314580 -32761592 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1281 243 0 0 0 chr9 91315642 91315669 -32760503 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1281 387 0 0 0 chr9 91316819 91316862 -32759310 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1281 597 192 88 0 chr9 91316992 91317117 -32759055 - B3 SINE B2 -77 139 4 4 1281 375 282 52 57 chr9 91317240 91317469 -32758703 + RLTR15 LTR ERVK 49 276 -83 4 1281 824 147 85 35 chr9 91317835 91317976 -32758196 + B1_Mur2 SINE Alu 2 149 0 4 1281 550 243 250 17 chr9 91318607 91318779 -32757393 - B3 SINE B2 -4 212 1 4 1281 252 195 0 0 chr9 91319422 91319463 -32756709 - 5S rRNA rRNA -79 42 2 4 1281 241 318 0 0 chr9 91319699 91319762 -32756410 - tRNA-Ala-GCY_ tRNA tRNA -10 65 3 4 1281 378 0 0 0 chr9 91320505 91320547 -32755625 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1281 527 216 90 0 chr9 91320560 91320671 -32755501 - RSINE1 SINE B4 -31 134 14 4 1281 27 0 0 0 chr9 91320685 91320712 -32755460 + AT_rich Low_complexity Low_complexity 1 27 0 4 1281 549 238 87 0 chr9 91320805 91320931 -32755241 + B1_Mur1 SINE Alu 12 148 -1 4 1281 757 255 14 0 chr9 91320969 91321110 -32755062 + B3 SINE B2 1 143 -73 4 1281 381 304 70 28 chr9 91321155 91321297 -32754875 - RSINE1 SINE B4 -17 148 1 4 1281 339 245 147 13 chr9 91321367 91321465 -32754707 + PB1D10 SINE Alu 13 115 -2 4 1281 184 356 86 9 chr9 91321633 91321749 -32754423 - MIR SINE MIR -66 142 18 4 1281 328 289 54 62 chr9 91322103 91322232 -32753940 + RSINE1 SINE B4 2 129 -36 4 1281 247 218 105 68 chr9 91322316 91322449 -32753723 + Lx8 LINE L1 7330 7467 -6 4 1281 251 161 0 18 chr9 91322674 91322731 -32753441 + A-rich Low_complexity Low_complexity 4 59 0 4 1281 1232 82 0 0 chr9 91323043 91323190 -32752982 + B1_Mus2 SINE Alu 1 147 0 4 1281 432 0 0 0 chr9 91323193 91323241 -32752931 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 4 1281 324 0 0 0 chr9 91323260 91323296 -32752876 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1281 336 24 0 0 chr9 91323457 91323498 -32752674 + (TATG)n Simple_repeat Simple_repeat 2 42 0 4 1281 859 186 36 0 chr9 91323499 91323639 -32752533 - B1_Mur4 SINE Alu -5 145 1 4 1281 216 0 0 0 chr9 91323709 91323733 -32752439 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1281 23 78 0 0 chr9 91323735 91323786 -32752386 + AT_rich Low_complexity Low_complexity 1 51 0 4 1281 320 333 0 45 chr9 91323811 91323921 -32752251 - PB1D10 SINE Alu -10 107 3 4 1281 630 290 38 7 chr9 91324080 91324281 -32751891 - B3A SINE B2 -5 211 1 4 1281 444 19 0 0 chr9 91324623 91324676 -32751496 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1281 533 232 98 0 chr9 91325309 91325421 -32750751 + B1_Mur2 SINE Alu 1 123 -26 4 1281 884 143 12 58 chr9 91326130 91326301 -32749871 - Lx4B LINE L1 -5 7053 6891 4 1281 450 0 0 0 chr9 91328423 91328473 -32747699 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1281 510 222 0 27 chr9 91328853 91328964 -32747208 - B1_Mur4 SINE Alu -2 148 41 4 1281 3308 154 46 45 chr9 91328982 91329042 -32747130 - RMER6A LTR ERVK 0 756 705 4 1281 980 102 64 14 chr9 91329042 91329182 -32746990 - B1_Mm SINE Alu 0 147 1 4 1281 3308 154 46 45 chr9 91329182 91329768 -32746404 - RMER6A LTR ERVK -52 704 109 4 1281 27 29 0 0 chr9 91329853 91329887 -32746285 + AT_rich Low_complexity Low_complexity 1 34 0 4 1281 186 253 22 98 chr9 91329989 91330081 -32746091 + MIR SINE MIR 108 192 -70 4 1281 877 176 49 0 chr9 91330289 91330431 -32745741 + B1_Mur4 SINE Alu 2 150 0 4 1281 961 225 30 15 chr9 91330716 91330919 -32745253 - B3 SINE B2 -10 206 1 4 1281 474 223 0 0 chr9 91330933 91331054 -32745118 + CT-rich Low_complexity Low_complexity 2 122 0 4 1281 489 178 148 9 chr9 91331065 91331173 -32744999 - B1_Mus1 SINE Alu -25 123 1 4 1281 180 0 0 0 chr9 91331219 91331239 -32744933 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1281 3020 192 102 11 chr9 91331261 91331868 -32744304 - RMER1B Other Other -8 1058 397 4 1281 1191 93 97 23 chr9 91332127 91332303 -32743869 - B2_Mm2 SINE B2 -5 190 2 4 1281 315 0 0 0 chr9 91332653 91332688 -32743484 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1281 199 330 67 39 chr9 91337661 91337765 -32738407 + MIRm SINE MIR 35 141 -135 4 1281 248 137 20 0 chr9 91337926 91337977 -32738195 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1281 363 209 17 9 chr9 91338015 91338131 -32738041 + (TG)n Simple_repeat Simple_repeat 2 118 0 4 1281 243 0 0 0 chr9 91340117 91340144 -32736028 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1281 21 0 0 0 chr9 91342152 91342173 -32733999 + AT_rich Low_complexity Low_complexity 1 21 0 4 1281 326 292 31 11 chr9 91342499 91342613 -32733559 - PB1 SINE Alu -9 118 5 4 1281 238 333 22 0 chr9 91343721 91343811 -32732361 - PB1D10 SINE Alu -8 109 18 4 1281 428 335 178 18 chr9 91344657 91345216 -32730956 - MER63C DNA AcHobo -123 807 159 4 1281 220 275 42 28 chr9 91345236 91345252 -32730920 + B1F SINE Alu 60 131 -18 4 1281 226 291 0 0 chr9 91345252 91345307 -32730865 + ID_B1 SINE B4 152 206 -18 4 1281 508 276 26 0 chr9 91345410 91345526 -32730646 + RSINE1 SINE B4 9 127 -38 4 1281 371 216 8 72 chr9 91345600 91345725 -32730447 - MER63C DNA AcHobo -770 160 44 4 1281 518 41 14 0 chr9 91346509 91346582 -32729590 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 4 1281 1056 73 0 0 chr9 91346583 91346719 -32729453 - B1_Mm SINE Alu -11 136 1 4 1281 486 57 22 43 chr9 91347044 91347136 -32729036 + (TCTCTG)n Simple_repeat Simple_repeat 6 95 0 4 1281 303 93 0 0 chr9 91347853 91347896 -32728276 + (TCC)n Simple_repeat Simple_repeat 3 45 0 5 1281 460 179 202 8 chr9 91347901 91348025 -32728147 - B1_Mus1 SINE Alu 0 148 1 5 1281 369 349 24 8 chr9 91348066 91348193 -32727979 + B1F1 SINE Alu 8 136 -13 5 1281 293 0 27 0 chr9 91348193 91348230 -32727942 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 5 1281 737 174 87 0 chr9 91348307 91348445 -32727727 - B1_Mur4 SINE Alu 0 150 1 5 1281 363 289 0 0 chr9 91348454 91348530 -32727642 - ID4_ SINE ID 0 83 8 5 1281 180 0 0 0 chr9 91348795 91348815 -32727357 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1281 1090 87 0 0 chr9 91348815 91348953 -32727219 - B1_Mus1 SINE Alu -10 138 1 5 1281 235 105 158 0 chr9 91349023 91349118 -32727054 + (TCCTG)n Simple_repeat Simple_repeat 1 110 0 5 1281 250 288 30 0 chr9 91349254 91349320 -32726852 - ID4_ SINE ID -14 69 2 5 1281 1108 106 6 6 chr9 91349723 91349903 -32726269 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 1281 208 245 19 0 chr9 91350017 91350070 -32726102 + CT-rich Low_complexity Low_complexity 1 54 0 5 1281 213 255 137 0 chr9 91350077 91350128 -32726044 - ID4 SINE ID -9 74 17 5 1281 191 229 16 0 chr9 91350359 91350420 -32725752 + CT-rich Low_complexity Low_complexity 3 64 0 5 1281 24 32 0 0 chr9 91350931 91350962 -32725210 + AT_rich Low_complexity Low_complexity 1 31 0 5 1281 21 0 0 0 chr9 91351036 91351057 -32725115 + AT_rich Low_complexity Low_complexity 1 21 0 5 1281 21 0 0 0 chr9 91351657 91351678 -32724494 + AT_rich Low_complexity Low_complexity 1 21 0 5 1281 279 0 0 0 chr9 91352048 91352079 -32724093 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1281 3089 44 13 0 chr9 91352500 91352889 -32723283 + L1Md_F3 LINE L1 6190 6583 -1 5 1281 2568 149 215 11 chr9 91353614 91354228 -32721944 - RMER6A LTR ERVK -2 754 1 5 1281 405 0 0 0 chr9 91354688 91354733 -32721439 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1281 474 49 0 0 chr9 91354734 91354795 -32721377 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1281 804 85 31 0 chr9 91355290 91355419 -32720753 - L1Md_F2 LINE L1 0 6582 6450 5 1281 217 337 11 11 chr9 91356080 91356170 -32720002 + GA-rich Low_complexity Low_complexity 4 93 0 5 1281 744 279 50 0 chr9 91356540 91356741 -32719431 + B3 SINE B2 1 211 -5 5 1281 256 235 43 10 chr9 91356825 91357039 -32719133 + (TA)n Simple_repeat Simple_repeat 1 221 0 5 1282 423 0 0 0 chr9 91359327 91359374 -32716798 + (CTA)n Simple_repeat Simple_repeat 1 47 0 5 1282 28 0 0 0 chr9 91360480 91360508 -32715664 + AT_rich Low_complexity Low_complexity 1 28 0 5 1282 223 322 88 11 chr9 91361163 91361254 -32714918 + BC1_Mm scRNA scRNA 2 99 -53 5 1282 272 225 92 66 chr9 91361456 91361532 -32714640 - ID4_ SINE ID 0 83 6 5 1282 507 101 0 0 chr9 91362079 91362158 -32714014 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 1282 252 0 0 0 chr9 91362158 91362186 -32713986 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1282 333 0 0 0 chr9 91362186 91362222 -32713950 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1282 432 0 0 0 chr9 91362768 91362816 -32713356 + (TATAA)n Simple_repeat Simple_repeat 5 52 0 5 1282 1071 88 7 0 chr9 91362816 91362964 -32713208 - B2_Mm1t SINE B2 -44 149 1 5 1282 23 33 0 0 chr9 91363739 91363769 -32712403 + AT_rich Low_complexity Low_complexity 1 30 0 5 1282 321 303 48 16 chr9 91364219 91364343 -32711829 + ORR1E LTR MaLR 18 145 -214 5 1282 3107 67 2 17 chr9 91365032 91365440 -32710732 + L1_Mus2 LINE L1 6163 6564 -2 5 1282 614 201 63 21 chr9 91365608 91365750 -32710422 - B1_Mur4 SINE Alu -1 149 2 5 1282 189 314 61 79 chr9 91366055 91366169 -32710003 + MIRc SINE MIR 12 123 -145 5 1282 6462 37 1 1 chr9 91366920 91367700 -32708472 - L1Md_F3 LINE L1 -1 6583 5804 5 1282 290 216 0 0 chr9 91367700 91367751 -32708421 + L1Md_F LINE L1 630 680 -5839 5 1282 297 381 0 39 chr9 91367877 91368030 -32708142 + MIR SINE MIR 103 249 -13 5 1282 186 255 0 0 chr9 91368134 91368185 -32707987 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1282 600 276 93 59 chr9 91368196 91368341 -32707831 + MER2 DNA MER2_type 9 156 -189 5 1282 468 0 0 0 chr9 91368341 91368393 -32707779 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1282 600 276 93 59 chr9 91368393 91368536 -32707636 + MER2 DNA MER2_type 157 307 -38 5 1282 712 206 0 41 chr9 91369329 91369476 -32706696 + B1_Mur4 SINE Alu 1 141 -9 5 1282 809 307 79 0 chr9 91369556 91369823 -32706349 + Lx8 LINE L1 6315 6602 -871 5 1282 3667 98 72 2 chr9 91369896 91370436 -32705736 - L1Md_F2 LINE L1 -15 6567 5990 5 1282 522 0 0 0 chr9 91371450 91371508 -32704664 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1282 267 263 26 26 chr9 91371917 91371959 -32704213 + polypyrimidine Low_complexity Low_complexity 74 117 0 5 1282 279 0 0 0 chr9 91371959 91371990 -32704182 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1282 267 263 26 26 chr9 91371990 91372064 -32704108 + polypyrimidine Low_complexity Low_complexity 1 73 0 5 1282 541 242 68 0 chr9 91372067 91372199 -32703973 - B1_Mur1 SINE Alu -8 141 1 5 1282 180 0 0 0 chr9 91373125 91373145 -32703027 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1282 311 167 15 0 chr9 91373410 91373476 -32702696 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1282 612 0 0 0 chr9 91373478 91373546 -32702626 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1282 1010 223 5 28 chr9 91374182 91374394 -32701778 + B3 SINE B2 2 208 -8 5 1282 1646 128 55 0 chr9 91374786 91375205 -32700967 - Lx3C LINE L1 -2 6974 6491 5 1282 557 250 122 46 chr9 91377053 91377250 -32698922 - B3 SINE B2 -1 215 4 5 1282 31 76 0 0 chr9 91377643 91377709 -32698463 + AT_rich Low_complexity Low_complexity 1 66 0 5 1282 27 0 0 0 chr9 91377723 91377750 -32698422 + AT_rich Low_complexity Low_complexity 1 27 0 5 1282 384 22 0 0 chr9 91378547 91378592 -32697580 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1282 267 262 0 0 chr9 91380473 91380534 -32695638 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1282 375 279 115 0 chr9 91381077 91381242 -32694930 - L1M1 LINE L1 -777 5523 5340 5 1282 230 288 15 0 chr9 91381259 91381325 -32694847 + ID4_ SINE ID 1 67 -16 5 1282 625 119 0 0 chr9 91381706 91381807 -32694365 - L1_Mus2 LINE L1 -1 6565 6465 5 1282 1089 246 175 39 chr9 91382026 91382386 -32693786 + Lx6 LINE L1 7024 7432 -28 5 1282 201 156 0 0 chr9 91382386 91382418 -32693754 + A-rich Low_complexity Low_complexity 1 32 0 5 1282 514 337 16 47 chr9 91382906 91383096 -32693076 - B3A SINE B2 0 198 15 5 1282 240 378 84 0 chr9 91383211 91383330 -32692842 - L2c LINE L2 -69 3318 3190 5 1282 289 309 25 55 chr9 91384100 91384299 -32691873 + L1M4c LINE L1 1617 1809 -4575 5 1282 467 286 116 12 chr9 91385231 91385404 -32690768 - B3A SINE B2 -5 193 3 5 1282 256 244 119 24 chr9 91385562 91385646 -32690526 - PB1D7 SINE Alu 0 120 29 5 1282 212 284 30 0 chr9 91385670 91385737 -32690435 + L2a LINE L2 3357 3425 -1 5 1282 224 345 11 65 chr9 91385911 91385944 -32690228 - B2_Mm2 SINE B2 -11 184 10 5 1282 571 265 46 33 chr9 91385944 91386096 -32690076 - RSINE1 SINE B4 -1 164 11 5 1282 791 216 3 9 chr9 91386558 91386906 -32689266 + CT-rich Low_complexity Low_complexity 1 346 0 5 1282 279 0 0 0 chr9 91386980 91387011 -32689161 + (TAA)n Simple_repeat Simple_repeat 1 31 0 5 1282 415 130 10 10 chr9 91387896 91387997 -32688175 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 5 1282 2816 115 84 4 chr9 91388588 91389051 -32687121 - Lx3C LINE L1 -2 6974 6475 5 1282 938 204 22 6 chr9 91389051 91389233 -32686939 - MTD LTR MaLR -217 202 18 5 1282 874 67 0 0 chr9 91390249 91390369 -32685803 - L1_Mus1 LINE L1 0 6567 6448 5 1282 481 284 6 58 chr9 91390718 91390890 -32685282 - RSINE1 SINE B4 0 165 3 5 1282 387 41 0 0 chr9 91391066 91391115 -32685057 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1282 26 0 0 0 chr9 91391694 91391720 -32684452 + AT_rich Low_complexity Low_complexity 1 26 0 5 1282 210 71 0 0 chr9 91391913 91391941 -32684231 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1282 235 240 125 0 chr9 91393156 91393252 -32682920 + Lx8 LINE L1 7360 7467 -6 5 1282 221 192 0 55 chr9 91393453 91393508 -32682664 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 5 1282 294 29 0 0 chr9 91394211 91394246 -32681926 + (CAT)n Simple_repeat Simple_repeat 3 37 0 5 1282 186 43 0 0 chr9 91394293 91394316 -32681856 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1282 615 112 0 0 chr9 91394572 91394670 -32681502 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 5 1282 336 169 17 0 chr9 91395303 91395362 -32680810 + B3A SINE B2 1 60 -138 5 1282 2362 90 5 46 chr9 91396075 91396447 -32679725 + Lx2 LINE L1 6633 6989 -8 5 1282 354 88 0 50 chr9 91396447 91396501 -32679671 + B1_Mm SINE Alu 95 145 -2 5 1282 212 270 0 48 chr9 91396676 91396781 -32679391 + (TTA)n Simple_repeat Simple_repeat 3 102 0 5 1282 721 298 80 0 chr9 91396784 91397022 -32679150 - Lx8 LINE L1 -901 6572 6316 5 1282 238 280 9 53 chr9 91397034 91397147 -32679025 - L1M2 LINE L1 -1857 4286 4179 5 1282 249 206 63 0 chr9 91397166 91397229 -32678943 + CT-rich Low_complexity Low_complexity 4 70 0 5 1282 658 313 24 65 chr9 91397233 91397605 -32678567 - L1M2 LINE L1 -2073 4070 3714 5 1282 370 94 0 0 chr9 91397782 91397835 -32678337 + B1_Mus2 SINE Alu 1 53 -94 5 1282 300 305 128 35 chr9 91397836 91398125 -32678047 - L1_Mur3 LINE L1 -4097 1783 1468 5 1282 6397 182 34 35 chr9 91398454 91399791 -32676381 - Lx2B LINE L1 0 7000 5665 6 1282 679 219 160 34 chr9 91400280 91400574 -32675598 - MTEb LTR MaLR -48 331 1 6 1282 1811 233 121 27 chr9 91400682 91401194 -32674978 - RMER15 LTR ERVL -15 560 1 6 1282 189 0 0 0 chr9 91401240 91401261 -32674911 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1282 297 0 0 0 chr9 91401895 91401928 -32674244 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1282 21 89 0 0 chr9 91402287 91402343 -32673829 + AT_rich Low_complexity Low_complexity 1 56 0 6 1282 333 0 0 0 chr9 91402823 91402860 -32673312 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1282 242 160 20 20 chr9 91402860 91402911 -32673261 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1282 207 139 0 0 chr9 91403124 91403160 -32673012 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 6 1282 517 229 25 0 chr9 91403634 91403752 -32672420 - B1_Mus1 SINE Alu -27 121 1 6 1282 26 0 0 0 chr9 91405103 91405129 -32671043 + AT_rich Low_complexity Low_complexity 1 26 0 6 1282 258 32 0 0 chr9 91405453 91405484 -32670688 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 6 1282 195 69 0 0 chr9 91405485 91405514 -32670658 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1282 21 0 0 0 chr9 91406713 91406734 -32669438 + AT_rich Low_complexity Low_complexity 1 21 0 6 1282 2303 38 27 7 chr9 91411330 91411624 -32664548 - L1Md_F3 LINE L1 0 6584 6285 6 1282 672 219 0 8 chr9 91411673 91411797 -32664375 + B1_Mur1 SINE Alu 6 128 -21 6 1282 213 281 0 0 chr9 91411800 91411857 -32664315 + GA-rich Low_complexity Low_complexity 2 58 0 6 1282 629 171 11 28 chr9 91412262 91412442 -32663730 + (TA)n Simple_repeat Simple_repeat 2 178 0 6 1282 234 0 0 0 chr9 91412456 91412482 -32663690 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1282 378 0 0 0 chr9 91412482 91412523 -32663649 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1282 248 311 56 71 chr9 91412794 91412991 -32663181 + MIRb SINE MIR 37 230 -38 6 1282 240 111 0 0 chr9 91414395 91414440 -32661732 + (T)n Simple_repeat Simple_repeat 1 45 0 6 1282 230 301 140 0 chr9 91414447 91414540 -32661632 - MER5A1 DNA MER1_type -20 146 41 6 1282 327 49 0 0 chr9 91415073 91415114 -32661058 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1282 190 261 71 14 chr9 91416039 91416109 -32660063 - MIRm SINE MIR -12 264 191 6 1282 183 344 103 12 chr9 91416219 91416384 -32659788 + MIRb SINE MIR 10 189 -79 6 1282 4655 98 5 0 chr9 91416871 91417521 -32658651 - L1_Mus3 LINE L1 0 6638 5986 6 1282 369 0 0 0 chr9 91417637 91417678 -32658494 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 6 1282 2549 136 36 2 chr9 91417685 91418104 -32658068 - Lx4A LINE L1 -14 7044 6612 6 1282 24 0 0 0 chr9 91418115 91418139 -32658033 + AT_rich Low_complexity Low_complexity 1 24 0 6 1282 5352 108 13 9 chr9 91418150 91418944 -32657228 - Lx3B LINE L1 -6 6967 6171 6 1282 923 126 56 31 chr9 91418944 91419140 -32657032 + Lx3C LINE L1 5983 6183 -793 6 1282 302 91 0 0 chr9 91419136 91419180 -32656992 - Lx4A LINE L1 -435 6623 6580 6 1282 700 293 6 18 chr9 91419423 91419590 -32656582 - B3A SINE B2 -30 168 4 6 1282 180 0 0 0 chr9 91419599 91419619 -32656553 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 1282 460 275 34 68 chr9 91420383 91420531 -32655641 + B1F1 SINE Alu 7 149 0 6 1282 382 235 125 2 chr9 91421071 91421190 -32654982 - PB1D9 SINE Alu -15 134 3 6 1282 26 64 0 0 chr9 91421657 91421704 -32654468 + AT_rich Low_complexity Low_complexity 1 47 0 6 1282 22 0 0 0 chr9 91421884 91421906 -32654266 + AT_rich Low_complexity Low_complexity 1 22 0 6 1282 273 119 0 0 chr9 91422164 91422206 -32653966 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1282 604 320 0 0 chr9 91424755 91424902 -32651270 - B1F SINE Alu 0 149 3 6 1282 272 367 29 71 chr9 91424902 91424930 -32651242 - B4A SINE B4 -212 80 60 6 1282 420 292 2 36 chr9 91424967 91425159 -32651013 + L1MA5A LINE L1 5653 5826 -471 6 1282 1830 227 68 72 chr9 91427402 91428024 -32648148 - Lx9 LINE L1 -1 7643 7025 6 1282 1071 96 7 0 chr9 91428151 91428297 -32647875 - B1_Mus2 SINE Alu 0 147 1 6 1282 546 294 116 7 chr9 91429190 91429337 -32646835 + B3A SINE B2 2 164 -34 6 1282 21 36 0 0 chr9 91429496 91429524 -32646648 + AT_rich Low_complexity Low_complexity 1 28 0 6 1282 342 0 0 0 chr9 91429936 91429974 -32646198 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 1282 278 296 74 0 chr9 91430138 91430246 -32645926 + PB1D10 SINE Alu 1 116 -1 6 1282 2800 226 72 51 chr9 91430441 91430596 -32645576 - Lx9 LINE L1 -1 7643 7478 6 1282 387 0 0 0 chr9 91430596 91430639 -32645533 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1282 2800 226 72 51 chr9 91430639 91431192 -32644980 - Lx9 LINE L1 -167 7477 6915 6 1282 649 137 17 0 chr9 91431192 91431309 -32644863 + L1_Mus3 LINE L1 6510 6628 -10 6 1282 2800 226 72 51 chr9 91431309 91431479 -32644693 - Lx9 LINE L1 -730 6914 6746 6 1282 441 317 29 38 chr9 91431639 91431849 -32644323 - L1_Mm LINE L1 -314 5569 5362 6 1282 376 361 121 13 chr9 91431949 91432255 -32643917 + L1MC LINE L1 3992 4330 -1816 6 1282 22 35 0 0 chr9 91432264 91432293 -32643879 + AT_rich Low_complexity Low_complexity 1 29 0 6 1282 676 306 134 7 chr9 91432322 91432895 -32643277 + L1MD LINE L1 4420 5065 -1081 6 1282 2405 156 54 36 chr9 91433022 91433520 -32642652 + Lx3C LINE L1 6466 6972 -4 6 1282 270 247 47 0 chr9 91433710 91433795 -32642377 + L1M5 LINE L1 5617 5705 -474 6 1282 22 70 0 0 chr9 91434051 91434094 -32642078 + AT_rich Low_complexity Low_complexity 1 43 0 6 1282 1017 153 0 0 chr9 91434252 91434428 -32641744 + CT-rich Low_complexity Low_complexity 2 177 0 6 1282 484 229 101 27 chr9 91434441 91434589 -32641583 - Lx3C LINE L1 -59 6917 6759 6 1282 671 245 68 21 chr9 91435343 91435535 -32640637 + ORR1D2 LTR MaLR 170 370 0 6 1282 2486 317 77 88 chr9 91435536 91435588 -32640584 + ORR1D2-int LTR MaLR 3 75 -1505 6 1282 297 0 0 0 chr9 91435588 91435621 -32640551 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 6 1282 2486 317 77 88 chr9 91435621 91436357 -32639815 + ORR1D2-int LTR MaLR 76 750 -830 6 1282 717 23 0 0 chr9 91436357 91436444 -32639728 + (TTTTA)n Simple_repeat Simple_repeat 4 90 0 6 1282 2486 317 77 88 chr9 91436444 91437207 -32638965 + ORR1D2-int LTR MaLR 751 1537 -43 6 1282 438 160 27 0 chr9 91437208 91437283 -32638889 + ORR1D2 LTR MaLR 15 91 -279 6 1282 3540 207 45 42 chr9 91437283 91438025 -32638147 + Lx5 LINE L1 6302 7045 -5 6 1282 216 0 0 0 chr9 91438057 91438081 -32638091 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1282 308 35 51 17 chr9 91438184 91438243 -32637929 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 6 1282 922 276 102 4 chr9 91438243 91438498 -32637674 + ORR1D2 LTR MaLR 90 369 -1 6 1282 198 71 0 0 chr9 91438592 91438620 -32637552 + (CAA)n Simple_repeat Simple_repeat 2 29 0 6 1282 314 313 102 57 chr9 91440395 91440571 -32635601 + 7SK RNA RNA 15 198 -133 6 1282 240 333 31 10 chr9 91441657 91441754 -32634418 + PB1 SINE Alu 22 120 -7 6 1282 551 346 92 5 chr9 91442785 91443003 -32633169 + B4A SINE B4 1 237 -55 6 1282 779 250 19 6 chr9 91443129 91443290 -32632882 + RSINE1 SINE B4 1 163 -2 6 1282 2122 184 86 8 chr9 91443727 91444008 -32632164 - RLTR11A2 LTR ERVK 0 527 232 6 1282 1208 91 6 0 chr9 91444008 91444184 -32631988 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 6 1282 2122 184 86 8 chr9 91444184 91444391 -32631781 - RLTR11A2 LTR ERVK -296 231 2 6 1282 4384 261 71 20 chr9 91444715 91445601 -32630571 + Lx6 LINE L1 6234 7146 -314 6 1282 1395 48 16 5 chr9 91445601 91445791 -32630381 - L1Md_F2 LINE L1 -2 6580 6389 6 1282 4384 261 71 20 chr9 91445791 91446071 -32630101 + Lx6 LINE L1 7147 7459 -1 6 1282 210 178 0 22 chr9 91446116 91446162 -32630010 + A-rich Low_complexity Low_complexity 5 49 0 6 1282 21 36 0 0 chr9 91446605 91446633 -32629539 + AT_rich Low_complexity Low_complexity 1 28 0 6 1282 6870 164 33 10 chr9 91446908 91448158 -32628014 - Lx2B LINE L1 -5 6995 5717 6 1282 829 196 54 24 chr9 91448912 91449079 -32627093 - MTC LTR MaLR -54 367 196 6 1282 3801 84 70 11 chr9 91449088 91449632 -32626540 - L1_Mus1 LINE L1 0 6567 5992 6 1282 22 0 0 0 chr9 91449632 91449654 -32626518 + AT_rich Low_complexity Low_complexity 1 22 0 6 1282 295 319 161 4 chr9 91449901 91450137 -32626035 + B4A SINE B4 1 273 -19 6 1282 477 50 0 0 chr9 91450486 91450546 -32625626 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1282 261 0 0 0 chr9 91450546 91450574 -32625598 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1282 21 57 0 0 chr9 91451501 91451536 -32624636 + AT_rich Low_complexity Low_complexity 1 35 0 6 1282 527 241 201 0 chr9 91452071 91452245 -32623927 + B3 SINE B2 2 210 -6 6 1282 207 69 0 0 chr9 91452578 91452607 -32623565 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1282 265 286 75 9 chr9 91453697 91453803 -32622369 - MLT1A1 LTR MaLR -295 113 1 6 1282 332 73 0 0 chr9 91455549 91455604 -32620568 + L1_Mus4 LINE L1 6580 6634 -2 6 1282 383 333 64 0 chr9 91455848 91455989 -32620183 + RSINE1 SINE B4 5 154 -11 6 1282 306 0 0 0 chr9 91455996 91456030 -32620142 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1282 468 111 0 0 chr9 91456236 91456308 -32619864 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1282 544 252 20 67 chr9 91456321 91456470 -32619702 - RSINE1 SINE B4 -22 143 2 6 1282 358 214 9 19 chr9 91456493 91456598 -32619574 - Lx9 LINE L1 -7 7637 7534 6 1282 1301 197 4 34 chr9 91456631 91456894 -32619278 - Lx9 LINE L1 -192 7452 7198 6 1282 229 178 0 22 chr9 91457007 91457053 -32619119 - Lx9 LINE L1 -528 7116 7072 6 1282 1131 268 28 82 chr9 91457279 91457669 -32618503 + Lx9 LINE L1 6369 6737 -907 6 1282 1196 250 72 38 chr9 91457669 91458060 -32618112 + Lx9 LINE L1 7109 7512 -132 6 1282 245 226 8 31 chr9 91458063 91458191 -32617981 + (CATA)n Simple_repeat Simple_repeat 2 126 0 6 1282 283 226 0 61 chr9 91458199 91458298 -32617874 + Lx9 LINE L1 7537 7629 -15 6 1282 692 186 6 0 chr9 91458541 91458718 -32617454 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 1282 534 70 0 0 chr9 91458718 91458789 -32617383 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 1282 817 286 22 65 chr9 91459440 91459717 -32616455 - B4A SINE B4 -22 270 6 6 1282 1170 86 40 0 chr9 91460031 91460206 -32615966 + L1_Mus1 LINE L1 6385 6566 -1 6 1282 25 90 0 0 chr9 91460228 91460295 -32615877 + AT_rich Low_complexity Low_complexity 1 67 0 7 1282 22 0 0 0 chr9 91460556 91460578 -32615594 + AT_rich Low_complexity Low_complexity 1 22 0 7 1282 262 21 85 0 chr9 91460578 91460625 -32615547 - L1Md_F3 LINE L1 -2 6582 6532 7 1282 207 100 0 0 chr9 91462372 91462402 -32613770 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1282 269 0 56 0 chr9 91463517 91463553 -32612619 + (CATA)n Simple_repeat Simple_repeat 2 39 0 7 1282 30 27 0 0 chr9 91463573 91463610 -32612562 + AT_rich Low_complexity Low_complexity 1 37 0 7 1282 1325 86 21 0 chr9 91464046 91464232 -32611940 + B2_Mm2 SINE B2 1 190 -5 7 1282 2200 142 44 0 chr9 91464789 91465155 -32611017 - MERVL_2A-int LTR ERVL -317 5444 5063 7 1282 18523 73 2 4 chr9 91465157 91468329 -32607843 - L1Md_F2 LINE L1 -14 6568 3401 7 1282 672 152 19 0 chr9 91468330 91468435 -32607737 - MERVL_2A-int LTR ERVL -702 5059 4953 7 1282 3656 135 27 5 chr9 91468435 91469023 -32607149 - MT2B LTR ERVL 0 601 1 7 1282 186 71 0 0 chr9 91469405 91469433 -32606739 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 7 1282 1101 78 0 0 chr9 91469434 91469576 -32606596 - B1_Mus2 SINE Alu -5 142 1 7 1282 2249 113 12 3 chr9 91469653 91469973 -32606199 - ORR1A2 LTR MaLR 0 327 5 7 1282 205 250 21 0 chr9 91470020 91470068 -32606104 + (TTA)n Simple_repeat Simple_repeat 3 51 0 7 1282 1277 262 47 50 chr9 91470915 91471376 -32604796 - L1_Rod LINE L1 -3079 2768 2306 7 1282 402 21 0 0 chr9 91471376 91471423 -32604749 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1282 1277 262 47 50 chr9 91471423 91471520 -32604652 - L1_Rod LINE L1 -3542 2305 2212 7 1282 23 0 0 0 chr9 91471637 91471660 -32604512 + AT_rich Low_complexity Low_complexity 1 23 0 7 1282 809 288 44 10 chr9 91471673 91471968 -32604204 - L1_Rod LINE L1 -3637 2210 1906 7 1282 2904 125 2 48 chr9 91471968 91472472 -32603700 - Lx LINE L1 0 6654 6174 7 1282 328 130 0 0 chr9 91472473 91472519 -32603653 + Lx LINE L1 6144 6189 -465 7 1282 1317 167 43 0 chr9 91472516 91472750 -32603422 - L1_Mm LINE L1 -185 5698 5455 7 1282 1322 198 91 48 chr9 91472737 91473156 -32603016 - L1_Rod LINE L1 -3947 1900 1464 7 1282 21 0 0 0 chr9 91473538 91473559 -32602613 + AT_rich Low_complexity Low_complexity 1 21 0 7 1282 432 0 0 0 chr9 91473740 91473788 -32602384 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1282 642 286 87 38 chr9 91473818 91474083 -32602089 - MLT2B4 LTR ERVL -184 280 3 7 1282 1524 216 35 56 chr9 91474445 91474611 -32601561 - ORR1D1 LTR MaLR -5 369 202 7 1282 1171 121 0 10 chr9 91474611 91474804 -32601368 + L1_Mus4 LINE L1 6438 6628 -8 7 1282 1524 216 35 56 chr9 91474804 91474847 -32601325 - ORR1D1 LTR MaLR -173 201 167 7 1282 1200 14 0 0 chr9 91474847 91474985 -32601187 + (GA)n Simple_repeat Simple_repeat 1 138 0 7 1282 1524 216 35 56 chr9 91474985 91475151 -32601021 - ORR1D1 LTR MaLR -208 166 4 7 1282 504 119 12 12 chr9 91476135 91476220 -32599952 - MTD LTR MaLR 0 421 337 7 1282 6880 103 58 3 chr9 91476220 91477676 -32598496 - L1_Mus3 LINE L1 -7 6631 5101 7 1282 1539 207 43 12 chr9 91477710 91478038 -32598134 - MTD LTR MaLR -81 338 1 7 1282 22 35 0 0 chr9 91478355 91478384 -32597788 + AT_rich Low_complexity Low_complexity 1 29 0 7 1282 225 0 0 0 chr9 91479644 91479669 -32596503 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1282 26 0 0 0 chr9 91480077 91480103 -32596069 + AT_rich Low_complexity Low_complexity 1 26 0 7 1282 774 32 0 0 chr9 91481136 91481229 -32594943 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 7 1282 249 0 73 0 chr9 91483418 91483459 -32592713 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1282 284 314 22 88 chr9 91483461 91483597 -32592575 + MLT1I LTR MaLR 254 380 -31 7 1282 1019 270 4 31 chr9 91484568 91484828 -32591344 + Lx5 LINE L1 6786 7038 -12 7 1282 468 91 0 0 chr9 91485726 91485792 -32590380 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1282 185 226 19 0 chr9 91485819 91485872 -32590300 + (CATA)n Simple_repeat Simple_repeat 1 54 0 7 1282 282 56 0 0 chr9 91486580 91486616 -32589556 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1282 342 0 0 0 chr9 91487759 91487797 -32588375 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 1282 210 71 0 0 chr9 91487953 91487981 -32588191 + (T)n Simple_repeat Simple_repeat 1 28 0 7 160 2917 60 0 3 chr9 91488077 91488462 -32587710 - L1Md_F2 LINE L1 -1 6581 6198 7 1283 225 143 31 31 chr9 91489345 91489364 -32586808 + polypyrimidine Low_complexity Low_complexity 51 68 0 7 1283 1076 96 0 22 chr9 91489364 91489545 -32586627 + (TCCC)n Simple_repeat Simple_repeat 2 178 0 7 1283 225 143 31 31 chr9 91489545 91489590 -32586582 + CT-rich Low_complexity Low_complexity 5 50 0 7 1283 5364 233 31 17 chr9 91489905 91491803 -32584369 - Lx6 LINE L1 -9 7451 5424 7 1283 5342 167 101 76 chr9 91491801 91492768 -32583404 + L1_Mur3 LINE L1 2466 3489 -2391 7 1283 204 111 0 0 chr9 91492768 91492804 -32583368 + (CAA)n Simple_repeat Simple_repeat 2 37 0 7 1283 5342 167 101 76 chr9 91492804 91493226 -32582946 + L1_Mur3 LINE L1 3490 3890 -1990 7 1283 7976 42 14 1 chr9 91493524 91494845 -32581327 - L1Md_F2 LINE L1 0 6582 5249 7 1283 259 316 51 0 chr9 91495234 91495332 -32580840 + RSINE1 SINE B4 47 149 -16 7 1283 431 63 16 0 chr9 91495353 91495416 -32580756 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1283 23 54 0 0 chr9 91495441 91495478 -32580694 + AT_rich Low_complexity Low_complexity 1 37 0 7 1283 841 279 83 0 chr9 91497151 91497231 -32578941 + B4A SINE B4 2 84 -208 7 1283 468 0 0 0 chr9 91497231 91497283 -32578889 + (CAA)n Simple_repeat Simple_repeat 2 53 0 7 1283 841 279 83 0 chr9 91497283 91497467 -32578705 + B4A SINE B4 85 287 -5 7 1283 300 154 0 0 chr9 91497949 91498001 -32578171 + (CAT)n Simple_repeat Simple_repeat 3 54 0 7 1283 270 0 0 0 chr9 91498003 91498033 -32578139 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1283 529 254 0 44 chr9 91498033 91498169 -32578003 - B1_Mm SINE Alu -15 132 3 7 1283 748 209 0 14 chr9 91498376 91498517 -32577655 + B1_Mur4 SINE Alu 3 141 -9 7 1283 213 65 0 0 chr9 91498517 91498548 -32577624 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1283 576 0 0 0 chr9 91498549 91498613 -32577559 + (GA)n Simple_repeat Simple_repeat 2 65 0 7 1283 2064 142 332 6 chr9 91498628 91499146 -32577026 + RMER6C LTR ERVK 1 687 -3 7 1283 27 0 0 0 chr9 91500185 91500212 -32575960 + AT_rich Low_complexity Low_complexity 1 27 0 1 1283 255 289 0 100 chr9 91500215 91500315 -32575857 - PB1D7 SINE Alu -8 112 23 2 1283 452 300 26 121 chr9 91500388 91500695 -32575477 + L1MB8 LINE L1 5895 6172 -6 3 1283 810 120 31 31 chr9 91500727 91501048 -32575124 + GA-rich Low_complexity Low_complexity 1 321 0 4 1283 210 37 0 0 chr9 91502056 91502083 -32574089 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1283 21 0 0 0 chr9 91503175 91503196 -32572976 + AT_rich Low_complexity Low_complexity 1 21 0 6 1283 232 186 0 0 chr9 91503287 91503330 -32572842 + A-rich Low_complexity Low_complexity 1 43 0 7 1283 22 0 0 0 chr9 91504206 91504228 -32571944 + AT_rich Low_complexity Low_complexity 1 22 0 8 1283 356 0 0 22 chr9 91505161 91505206 -32570966 + (TTA)n Simple_repeat Simple_repeat 3 46 0 9 1283 458 286 42 0 chr9 91506353 91506472 -32569700 - B1F2 SINE Alu 0 149 26 1 1283 273 188 31 0 chr9 91506664 91506728 -32569444 + B3 SINE B2 145 210 -6 1 1283 423 0 0 0 chr9 91506731 91506778 -32569394 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1283 248 271 0 0 chr9 91506778 91506837 -32569335 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1283 1117 282 93 70 chr9 91507032 91507951 -32568221 - Charlie12 DNA MER1_type -3 2870 1931 1 1283 29 47 0 0 chr9 91507992 91508035 -32568137 + AT_rich Low_complexity Low_complexity 1 43 0 1 1283 201 74 0 0 chr9 91508339 91508366 -32567806 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1283 474 70 0 0 chr9 91508366 91508437 -32567735 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1283 396 0 0 0 chr9 91508437 91508480 -32567692 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1283 881 274 75 45 chr9 91508480 91508839 -32567333 - Charlie12 DNA MER1_type -949 1924 1555 1 1283 7688 70 0 12 chr9 91508839 91510052 -32566120 + L1_Mus1 LINE L1 5373 6567 0 1 1283 884 304 150 24 chr9 91510064 91510478 -32565694 - Charlie12 DNA MER1_type -1321 1552 1087 1 1283 34 0 0 0 chr9 91510603 91510637 -32565535 + AT_rich Low_complexity Low_complexity 1 34 0 2 1283 398 265 233 0 chr9 91510638 91510857 -32565315 - Lx8 LINE L1 -8 7465 7196 2 1283 696 245 76 58 chr9 91510860 91511137 -32565035 - Charlie12 DNA MER1_type -1967 906 625 1 1283 375 331 45 80 chr9 91511244 91511444 -32564728 - Charlie12 DNA MER1_type -2269 604 412 1 1283 492 279 64 41 chr9 91511478 91511650 -32564522 + RMER30 DNA MER1_type 20 195 -7 2 1283 3652 46 2 7 chr9 91512275 91512731 -32563441 + L1Md_F2 LINE L1 6129 6582 0 2 1283 606 75 0 0 chr9 91512978 91513071 -32563101 + (TC)n Simple_repeat Simple_repeat 1 93 0 2 1283 669 243 30 68 chr9 91513130 91513426 -32562746 - Lx7 LINE L1 -17 7679 7395 2 1283 367 106 15 15 chr9 91513426 91513493 -32562679 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 1283 35364 36 0 0 chr9 91513632 91519237 -32556935 + L1Md_T LINE L1 1 5589 -297 2 1283 9005 4 0 0 chr9 91519237 91520233 -32555939 + L1Md_T LINE L1 5590 6585 0 2 1283 207 0 0 0 chr9 91520559 91520582 -32555590 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1283 254 392 53 20 chr9 91520956 91521107 -32555065 - MER106B DNA MER1_type -903 156 1 2 1283 242 324 60 77 chr9 91521157 91521274 -32554898 + LTR33C LTR ERVL 118 232 -397 3 1283 546 16 0 0 chr9 91521483 91521546 -32554626 + (TATG)n Simple_repeat Simple_repeat 2 64 0 3 1283 2211 167 29 15 chr9 91521546 91521954 -32554218 - Lx4A LINE L1 -19 7039 6626 3 1283 1859 188 5 21 chr9 91521957 91522338 -32553834 + Lx4A LINE L1 5877 6251 -807 3 1283 25 0 0 0 chr9 91522519 91522544 -32553628 + AT_rich Low_complexity Low_complexity 1 25 0 3 1283 309 281 65 88 chr9 91522612 91522663 -32553509 - Lx9 LINE L1 -96 7548 7493 3 1283 414 121 0 0 chr9 91522663 91522729 -32553443 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1283 309 281 65 88 chr9 91522729 91522892 -32553280 - Lx9 LINE L1 -152 7492 7339 3 1283 1429 155 29 0 chr9 91522900 91523139 -32553033 + RMER6C LTR ERVK 1 246 -444 3 1283 4068 246 60 59 chr9 91523139 91524525 -32551647 - L1_Rod LINE L1 -2252 3595 2211 3 1283 1066 57 50 0 chr9 91524525 91524665 -32551507 - B1_Mus1 SINE Alu 0 148 2 3 1283 4068 246 60 59 chr9 91524665 91525015 -32551157 - L1_Rod LINE L1 -3637 2210 1856 3 1283 2913 136 24 2 chr9 91525043 91525508 -32550664 - Lx2B LINE L1 -10 6990 6516 4 1283 5345 137 16 14 chr9 91525508 91526433 -32549739 - L1_Mur2 LINE L1 -1034 4843 3917 4 1283 255 183 27 27 chr9 91526434 91526498 -32549674 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1283 297 0 0 0 chr9 91526498 91526531 -32549641 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1283 255 183 27 27 chr9 91526531 91526539 -32549633 + (TA)n Simple_repeat Simple_repeat 1 8 0 4 1283 1040 133 91 41 chr9 91526539 91526759 -32549413 - Lx LINE L1 -17 6637 6407 4 1283 1691 247 56 22 chr9 91526898 91527606 -32548566 - L1_Rod LINE L1 -4057 1790 1050 3 1283 621 49 0 0 chr9 91527606 91527687 -32548485 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 1283 802 274 95 29 chr9 91527687 91527826 -32548346 - L1_Rod LINE L1 -6559 1049 901 3 1283 559 280 101 0 chr9 91528370 91528538 -32547634 - Lx6 LINE L1 -36 7424 7240 4 1283 36 0 0 0 chr9 91528649 91528685 -32547487 + AT_rich Low_complexity Low_complexity 1 36 0 4 1283 26 0 0 0 chr9 91528857 91528883 -32547289 + AT_rich Low_complexity Low_complexity 1 26 0 4 1283 182 37 37 0 chr9 91528984 91529011 -32547161 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 5 1283 1774 93 0 8 chr9 91529011 91529261 -32546911 - L1Md_F2 LINE L1 -39 6543 6296 5 1283 37864 30 0 0 chr9 91529279 91535698 -32540474 - L1Md_T LINE L1 0 6585 70 5 1283 390 21 0 0 chr9 91536856 91536903 -32539269 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 5 1283 247 216 118 26 chr9 91536918 91536994 -32539178 - L1MC5 LINE L1 -1157 6804 6722 5 1283 297 171 44 22 chr9 91537268 91537358 -32538814 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1283 270 81 0 0 chr9 91537381 91537418 -32538754 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 5 1283 1268 34 0 0 chr9 91537646 91537793 -32538379 + B1_Mm SINE Alu 1 147 0 5 1283 477 127 0 0 chr9 91537824 91537903 -32538269 + (A)n Simple_repeat Simple_repeat 1 79 0 5 1283 40682 11 0 0 chr9 91538179 91543619 -32532553 - L1Md_A LINE L1 0 6582 1142 5 1283 2425 35 23 0 chr9 91543615 91543925 -32532247 - L1Md_A LINE L1 -6200 524 208 5 1283 21 0 0 0 chr9 91544646 91544667 -32531505 + AT_rich Low_complexity Low_complexity 1 21 0 6 1283 186 118 0 0 chr9 91545092 91545126 -32531046 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 6 1283 2330 231 92 4 chr9 91545126 91545681 -32530491 - Lx6 LINE L1 -41 7419 6816 6 1283 634 27 0 0 chr9 91545803 91545877 -32530295 - L1_Mus1 LINE L1 -513 6054 5981 6 1283 3954 72 2 8 chr9 91545877 91546398 -32529774 + L1_Mus1 LINE L1 6050 6567 0 6 1283 21 36 0 0 chr9 91546503 91546531 -32529641 + AT_rich Low_complexity Low_complexity 1 28 0 6 1283 331 259 92 9 chr9 91546796 91546905 -32529267 + PB1D9 SINE Alu 1 118 -2 6 1283 214 48 0 87 chr9 91546937 91546983 -32529189 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 6 1283 26 30 0 0 chr9 91548497 91548530 -32527642 + AT_rich Low_complexity Low_complexity 1 33 0 6 1283 234 0 0 0 chr9 91548672 91548698 -32527474 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1283 24 77 0 0 chr9 91550086 91550138 -32526034 + AT_rich Low_complexity Low_complexity 1 52 0 6 1283 203 103 26 0 chr9 91550149 91550188 -32525984 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 7 1283 348 289 82 0 chr9 91550198 91550294 -32525878 + B3A SINE B2 2 105 -93 7 1283 496 261 134 13 chr9 91550294 91550541 -32525631 - RLTR10A LTR ERVK 0 411 114 7 1283 213 284 32 64 chr9 91550574 91550645 -32525527 + B3A SINE B2 86 157 -41 7 1283 582 63 0 0 chr9 91550645 91550724 -32525448 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1283 213 284 32 64 chr9 91550724 91550746 -32525426 + B3A SINE B2 158 176 -22 7 1283 5642 90 6 4 chr9 91551791 91552571 -32523601 - L1_Mus1 LINE L1 -1 6566 5785 7 1283 4176 50 19 0 chr9 91552568 91553090 -32523082 - L1Md_F2 LINE L1 0 6582 6051 7 1283 943 34 0 8 chr9 91553092 91553210 -32522962 - L1_Mus1 LINE L1 -842 5794 5678 7 1283 531 0 0 0 chr9 91553750 91553809 -32522363 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1283 329 0 24 0 chr9 91554536 91554577 -32521595 + (CAA)n Simple_repeat Simple_repeat 3 44 0 7 1283 242 350 60 51 chr9 91555339 91555556 -32520616 - MLT1C LTR MaLR -45 422 204 7 1283 232 178 0 0 chr9 91555572 91555617 -32520555 + CT-rich Low_complexity Low_complexity 1 45 0 7 1283 393 22 0 0 chr9 91555868 91555914 -32520258 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1283 408 55 0 0 chr9 91555914 91555968 -32520204 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1283 3702 81 16 34 chr9 91556095 91556659 -32519513 - L1_Mur1 LINE L1 -565 5321 4768 8 1283 9057 86 59 22 chr9 91556656 91556962 -32519210 + Lx3_Mus LINE L1 5602 5907 -1102 8 1283 324 64 0 0 chr9 91556962 91557009 -32519163 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 8 1283 9057 86 59 22 chr9 91557009 91558060 -32518112 + Lx3_Mus LINE L1 5908 7008 -1 8 1283 213 298 0 73 chr9 91558166 91558289 -32517883 + GA-rich Low_complexity Low_complexity 5 118 0 8 1283 37 52 0 0 chr9 91558953 91559011 -32517161 + AT_rich Low_complexity Low_complexity 1 58 0 8 1283 1007 296 99 27 chr9 91559616 91560173 -32515999 - Lx6 LINE L1 -26 7434 6479 8 1283 684 348 4 24 chr9 91560170 91560423 -32515749 - Lx6 LINE L1 -687 6363 6116 8 1283 248 102 20 0 chr9 91561008 91561057 -32515115 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 8 1283 3529 144 107 13 chr9 91561254 91561935 -32514237 + RMER6A LTR ERVK 12 756 0 8 1283 3825 184 100 36 chr9 91562790 91563632 -32512540 + Lx4B LINE L1 6162 7057 -1 9 1283 424 306 90 18 chr9 91563641 91564030 -32512142 + L1M2 LINE L1 4230 4646 -1497 9 1283 477 266 196 0 chr9 91564363 91564536 -32511636 - B3 SINE B2 -5 211 5 9 1283 1083 95 12 6 chr9 91564631 91564800 -32511372 - L1_Mus3 LINE L1 -3 6635 6466 9 1283 400 22 0 0 chr9 91564800 91564845 -32511327 + L1_Mus3 LINE L1 6199 6243 -395 9 1283 396 329 13 0 chr9 91565152 91565307 -32510865 + (TATG)n Simple_repeat Simple_repeat 4 160 0 9 1283 1272 90 45 0 chr9 91565655 91565833 -32510339 + B2_Mm2 SINE B2 2 187 -8 9 1283 218 278 40 27 chr9 91566039 91566113 -32510059 - L2a LINE L2 0 3426 3352 9 1283 307 248 130 7 chr9 91566148 91566286 -32509886 - L1M5 LINE L1 -342 5782 5628 9 1283 1753 203 4 65 chr9 91567316 91567791 -32508381 - L1_Mur2 LINE L1 -3719 2158 1713 9 1283 1187 263 60 38 chr9 91567777 91568411 -32507761 - Lx7 LINE L1 -658 7038 6359 1 1283 2091 88 47 6 chr9 91568411 91568730 -32507442 + L1Md_F2 LINE L1 6251 6582 0 1 1283 1047 272 67 58 chr9 91568730 91568742 -32507430 - Lx7 LINE L1 -1338 6358 6347 1 1283 480 342 66 58 chr9 91568778 91569020 -32507152 - RMER15 LTR ERVL 0 575 332 1 1283 420 77 0 0 chr9 91569074 91569139 -32507033 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1283 368 247 80 96 chr9 91569357 91569545 -32506627 - RMER15 LTR ERVL -390 185 1 1 1283 203 341 0 54 chr9 91569966 91570059 -32506113 + L4 LINE RTE 1111 1198 -831 1 1283 324 0 0 0 chr9 91570250 91570286 -32505886 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1283 709 261 15 0 chr9 91570764 91570894 -32505278 + RSINE1 SINE B4 4 135 -30 1 1283 836 296 104 28 chr9 91571882 91572209 -32503963 + ORR1E LTR MaLR 8 359 0 1 1283 361 299 23 11 chr9 91572689 91572777 -32503395 - RSINE1 SINE B4 -16 149 61 1 1283 737 181 0 55 chr9 91574398 91574544 -32501628 - B1_Mus2 SINE Alu -9 138 1 1 1283 1201 112 0 6 chr9 91574747 91574918 -32501254 + B2_Mm2 SINE B2 2 171 -24 1 1283 444 19 0 0 chr9 91574952 91575005 -32501167 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 1 1283 666 37 0 0 chr9 91575135 91575216 -32500956 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1283 230 269 140 70 chr9 91575601 91575701 -32500471 - LTR31 LTR ERV1 -304 315 209 1 1283 267 177 0 0 chr9 91577428 91577490 -32498682 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1283 22 88 0 0 chr9 91577554 91577611 -32498561 + AT_rich Low_complexity Low_complexity 1 57 0 1 1283 236 154 19 0 chr9 91577685 91577737 -32498435 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1 1283 3966 156 48 58 chr9 91577800 91578063 -32498109 + Lx LINE L1 5102 5364 -519 1 1283 1134 50 0 7 chr9 91578063 91578204 -32497968 + B1_Mm SINE Alu 1 140 -7 1 1283 7009 119 16 21 chr9 91578204 91579465 -32496707 + Lx LINE L1 5365 6620 -34 1 1283 291 239 42 76 chr9 91579477 91579595 -32496577 + RMER4B LTR ERVK 129 242 -343 1 1283 684 294 83 9 chr9 91579596 91579826 -32496346 + MurERV4-int LTR ERVK 1481 1727 -3533 1 1283 245 72 70 18 chr9 91579867 91579924 -32496248 + A-rich Low_complexity Low_complexity 2 61 0 1 1283 746 76 7 1 chr9 91579989 91580105 -32496067 + L1_Mm LINE L1 5445 5577 -723 1 1283 246 62 0 0 chr9 91580205 91580237 -32495935 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1 1283 30576 59 4 3 chr9 91580265 91584918 -32491254 - L1Md_F3 LINE L1 -102 6482 1824 1 1283 8666 7 0 0 chr9 91584918 91585942 -32490230 - L1Md_T LINE L1 0 6582 5615 1 1283 4469 97 1 21 chr9 91585942 91587187 -32488985 - L1Md_F3 LINE L1 -4046 1837 623 1 1283 3735 196 27 112 chr9 91587248 91588337 -32487835 + MYSERV6-int LTR ERVK 7964 8959 0 1 1283 610 207 200 13 chr9 91588337 91588572 -32487600 + RMER4B LTR ERVK 1 279 -306 1 1283 180 163 0 0 chr9 91588705 91588748 -32487424 + (ATTG)n Simple_repeat Simple_repeat 3 45 0 1 1283 368 251 204 53 chr9 91588765 91588971 -32487201 + RMER4B LTR ERVK 340 576 -9 1 1283 239 303 69 50 chr9 91589010 91589170 -32487002 + RLTR22_Mur LTR ERVK 1306 1468 -380 1 1283 477 348 131 15 chr9 91589280 91589540 -32486632 - B4A SINE B4 -2 290 1 1 1283 723 276 88 0 chr9 91589583 91589775 -32486397 - B3 SINE B2 -6 210 2 1 1283 21 0 0 0 chr9 91589997 91590018 -32486154 + AT_rich Low_complexity Low_complexity 1 21 0 1 1283 376 270 67 82 chr9 91590150 91590344 -32485828 - B3A SINE B2 -2 193 3 1 1283 270 309 29 22 chr9 91590474 91590613 -32485559 + (CAGAGA)n Simple_repeat Simple_repeat 5 144 0 1 1283 237 323 46 8 chr9 91591334 91591465 -32484707 - L1M5 LINE L1 -394 5730 5595 1 1283 2659 34 65 0 chr9 91592049 91592374 -32483798 + ORR1A1 LTR MaLR 1 346 0 1 1283 2423 170 58 29 chr9 91593220 91593590 -32482582 - RMER20A LTR ERVK -2 514 134 1 1283 380 37 19 0 chr9 91593590 91593644 -32482528 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1283 2423 170 58 29 chr9 91593644 91593752 -32482420 - RMER20A LTR ERVK -383 133 23 1 1283 3272 11 0 0 chr9 91593765 91594137 -32482035 - L1Md_A LINE L1 0 6582 6211 1 1283 284 348 199 15 chr9 91594145 91594472 -32481700 - MER70A LTR ERVL -25 447 61 1 1283 192 77 0 0 chr9 91595523 91595549 -32480623 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1283 276 130 0 0 chr9 91595667 91595713 -32480459 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1 1283 248 305 77 7 chr9 91595742 91595897 -32480275 - L1MA4 LINE L1 -366 5934 5769 1 1283 440 256 140 19 chr9 91596083 91596303 -32479869 - MTEa LTR MaLR -4 375 51 1 1283 786 284 61 17 chr9 91596426 91596770 -32479402 - L1MA4 LINE L1 -525 5775 5417 1 1283 807 290 101 116 chr9 91596791 91597391 -32478781 - L1MA4 LINE L1 -799 5344 4733 1 1283 306 0 0 0 chr9 91597391 91597425 -32478747 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1283 808 290 101 116 chr9 91597425 91598007 -32478165 - L1MA4 LINE L1 -1411 4732 4155 1 1283 825 11 0 0 chr9 91598007 91598101 -32478071 + (TTCCC)n Simple_repeat Simple_repeat 2 95 0 1 1283 808 308 71 25 chr9 91598101 91598456 -32477716 - L1MA4 LINE L1 -1726 4154 3798 1 1283 373 79 16 0 chr9 91598482 91598545 -32477627 - Lx2 LINE L1 0 6997 6934 1 1283 216 354 22 58 chr9 91599462 91599600 -32476572 - L2c LINE L2 -1 3386 3254 1 1283 225 35 0 0 chr9 91599914 91599943 -32476229 - RMER17B LTR ERVK -920 38 10 1 1283 628 255 125 73 chr9 91600425 91601058 -32475114 - L1MA4 LINE L1 -4100 1780 1099 1 1283 238 257 125 28 chr9 91601214 91601286 -32474886 + MER20 DNA MER1_type 1 79 -140 1 1283 311 141 0 15 chr9 91601292 91601357 -32474815 + CT-rich Low_complexity Low_complexity 1 64 0 1 1283 281 327 80 0 chr9 91601377 91601490 -32474682 + MER20 DNA MER1_type 93 214 -5 1 1283 538 276 80 43 chr9 91602238 91602438 -32473734 - B3A SINE B2 -2 214 5 1 1283 1056 59 0 0 chr9 91602458 91602594 -32473578 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 1 1283 21 82 0 0 chr9 91603441 91603490 -32472682 + AT_rich Low_complexity Low_complexity 1 49 0 1 1283 549 308 20 20 chr9 91603500 91603646 -32472526 + B1_Mur2 SINE Alu 4 149 0 1 1283 1955 220 90 38 chr9 91603768 91604302 -32471870 + Lx9 LINE L1 6907 7468 -176 1 1283 245 197 0 0 chr9 91604322 91604383 -32471789 + Lx9 LINE L1 7575 7635 -9 1 1283 21 0 0 0 chr9 91605147 91605168 -32471004 + AT_rich Low_complexity Low_complexity 1 21 0 1 1283 268 379 36 30 chr9 91606102 91606268 -32469904 - MamSINE1 SINE tRNA -1 289 123 1 1283 582 315 6 0 chr9 91606669 91606831 -32469341 - RSINE1 SINE B4 0 165 3 1 1283 22471 84 7 6 chr9 91607118 91611000 -32465172 - L1Md_F2 LINE L1 0 6582 2711 1 1283 37457 54 8 1 chr9 91610993 91617165 -32459007 - L1Md_T LINE L1 -1 6581 362 1 1283 471 35 0 0 chr9 91618581 91618638 -32457534 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 160 8866 153 17 5 chr9 91618746 91620635 -32455537 + Lx2 LINE L1 5090 6996 -1 1 1284 23 68 0 0 chr9 91621241 91621285 -32454887 + AT_rich Low_complexity Low_complexity 1 44 0 1 1284 325 332 32 110 chr9 91622193 91622538 -32453634 - ORR1E LTR MaLR -6 353 36 1 1284 216 122 0 0 chr9 91622799 91622840 -32453332 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1284 1045 290 20 0 chr9 91624374 91624626 -32451546 - Lx8 LINE L1 -254 7219 6963 1 1284 221 251 0 17 chr9 91624639 91624705 -32451467 - B3A SINE B2 -129 66 4 1 1284 2970 161 54 9 chr9 91624733 91625271 -32450901 - Lx4A LINE L1 -7 7051 6490 1 1284 235 259 0 34 chr9 91625735 91625823 -32450349 + A-rich Low_complexity Low_complexity 5 89 0 1 1284 1536 182 25 7 chr9 91625849 91626142 -32450030 - Lx6 LINE L1 -588 6872 6474 1 1284 1259 180 183 4 chr9 91626157 91626425 -32449747 + Lx6 LINE L1 6860 7175 -285 1 1284 244 213 33 0 chr9 91626626 91626687 -32449485 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1284 640 0 25 0 chr9 91626688 91626768 -32449404 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1 1284 917 300 89 25 chr9 91626772 91627301 -32448871 + L1MA6 LINE L1 5649 6211 -89 1 1284 22 56 0 0 chr9 91627347 91627383 -32448789 + AT_rich Low_complexity Low_complexity 1 36 0 1 1284 456 312 124 20 chr9 91627412 91627902 -32448270 + L1ME2 LINE L1 5346 5886 -278 1 1284 213 94 0 0 chr9 91628248 91628280 -32447892 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1284 264 100 0 0 chr9 91628281 91628321 -32447851 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1284 511 332 57 19 chr9 91628461 91628670 -32447502 - RMER15 LTR ERVL -337 238 22 1 1284 1079 180 14 27 chr9 91628679 91628902 -32447270 + URR1B DNA MER1_type 2 221 -4 1 1284 22 0 0 0 chr9 91630492 91630514 -32445658 + AT_rich Low_complexity Low_complexity 1 22 0 1 1284 939 276 28 28 chr9 91631051 91631367 -32444805 - Lx7 LINE L1 -16 7680 7361 1 1284 198 103 0 0 chr9 91631367 91631396 -32444776 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 1284 939 276 28 28 chr9 91631396 91631440 -32444732 - Lx7 LINE L1 -336 7360 7320 1 1284 441 301 23 26 chr9 91631456 91631712 -32444460 - L1M4 LINE L1 -2166 3714 3464 1 1284 1120 160 0 5 chr9 91631714 91631921 -32444251 - Lx2A LINE L1 -859 6149 5944 1 1284 2640 91 3 0 chr9 91631941 91632305 -32443867 + L1_Mus2 LINE L1 6185 6549 -17 1 1284 6272 100 35 1 chr9 91632307 91633965 -32442207 + L1Md_F LINE L1 404 2119 -3764 1 1284 6164 58 8 5 chr9 91633980 91634775 -32441397 - L1Md_F2 LINE L1 -3 6579 5783 1 1284 34578 58 10 13 chr9 91634777 91637224 -32438948 - L1Md_F2 LINE L1 -12 6570 4142 1 1284 1192 55 0 0 chr9 91637224 91637370 -32438802 - B1_Mm SINE Alu -1 146 1 1 1284 34578 63 9 28 chr9 91637370 91640653 -32435519 - L1Md_F2 LINE L1 -1742 4141 928 1 1284 435 232 0 0 chr9 91640651 91640746 -32435426 - L1Md_F2 LINE L1 -5987 629 535 1 1284 23386 88 9 53 chr9 91640741 91642956 -32433216 + L1Md_F2 LINE L1 2101 4338 -1545 1 1284 1356 51 0 0 chr9 91642956 91643131 -32433041 + L1Md_F2 LINE L1 6396 6570 -12 1 1284 23386 88 9 53 chr9 91643131 91644561 -32431611 + L1Md_F2 LINE L1 4339 5586 -297 1 1284 7369 85 3 11 chr9 91644562 91645563 -32430609 + L1Md_F2 LINE L1 5588 6580 -2 1 1284 1638 27 0 0 chr9 91645589 91645776 -32430396 + B2_Mm1t SINE B2 1 187 -6 1 1284 2101 176 0 3 chr9 91645806 91646164 -32430008 - Lx2A LINE L1 -198 5685 5329 1 1284 5391 128 6 8 chr9 91646163 91646989 -32429183 + Lx2A LINE L1 6132 6955 -53 1 1284 1128 126 0 27 chr9 91647099 91647287 -32428885 + Lx3C LINE L1 6149 6331 -645 1 1284 499 200 100 0 chr9 91647283 91647423 -32428749 - L1_Mur3 LINE L1 -6716 996 843 1 1284 1286 291 51 32 chr9 91647417 91648087 -32428085 - L1_Mur3 LINE L1 -7029 683 1 1 1284 400 234 58 95 chr9 91649867 91649961 -32426211 - Lx7 LINE L1 -348 7348 7259 1 1284 747 98 7 20 chr9 91649961 91650107 -32426065 - L1_Mus4 LINE L1 -3 6633 6490 1 1284 400 234 58 95 chr9 91650107 91650149 -32426023 - Lx7 LINE L1 -438 7258 7217 1 1284 2250 221 53 0 chr9 91650435 91650942 -32425230 - Lx9 LINE L1 -1 7643 7110 1 1284 549 299 12 25 chr9 91651228 91651389 -32424783 + Lx8 LINE L1 6240 6398 -1075 1 1284 591 162 25 25 chr9 91651692 91652017 -32424155 + CT-rich Low_complexity Low_complexity 1 325 0 2 1284 405 0 0 0 chr9 91652043 91652088 -32424084 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1284 3387 133 81 0 chr9 91652195 91652751 -32423421 - MT2B LTR ERVL 0 601 1 2 1284 342 216 0 39 chr9 91652789 91652866 -32423306 - ORR1A3-int LTR MaLR -1323 640 567 2 1284 11313 161 40 4 chr9 91652929 91654794 -32421378 - MERVL_2A-int LTR ERVL -220 5541 3609 2 1284 596 272 93 25 chr9 91654797 91655118 -32421054 + L1M3 LINE L1 4389 4731 -1409 2 1284 296 221 0 29 chr9 91655139 91655209 -32420963 + RLTR1D LTR ERV1 1 68 -586 2 1284 345 235 88 75 chr9 91655318 91655465 -32420707 + RLTR1D LTR ERV1 436 605 0 2 1284 859 292 72 50 chr9 91655465 91656449 -32419723 + L1M3 LINE L1 4756 5772 -519 2 1284 500 119 32 69 chr9 91656497 91656648 -32419524 + Lx2 LINE L1 6859 6970 -27 2 1284 3717 197 88 33 chr9 91656672 91658543 -32417629 - L1_Mur3 LINE L1 -3555 2325 297 2 1284 1169 62 0 0 chr9 91658847 91658993 -32417179 - B1_Mus1 SINE Alu -1 147 2 2 1284 917 287 78 9 chr9 91659498 91659829 -32416343 + ORR1E LTR MaLR 1 354 -5 2 1284 306 0 0 0 chr9 91659863 91659897 -32416275 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1284 477 0 0 0 chr9 91659897 91659949 -32416223 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1284 23 54 0 0 chr9 91660269 91660306 -32415866 + AT_rich Low_complexity Low_complexity 1 37 0 2 1284 23 0 0 0 chr9 91660512 91660535 -32415637 + AT_rich Low_complexity Low_complexity 1 23 0 2 1284 712 283 133 16 chr9 91662371 91662619 -32413553 - MTD LTR MaLR 0 419 143 2 1284 418 211 98 7 chr9 91662960 91663103 -32413069 + Tigger5 DNA MER2_type 2194 2349 -57 2 1284 299 384 60 0 chr9 91663560 91663693 -32412479 + ID_B1 SINE B4 2 142 -82 2 1284 14389 96 23 14 chr9 91663729 91666619 -32409553 + MusHAL1 LINE L1 7 2921 -432 2 1284 6955 70 3 9 chr9 91666618 91667540 -32408632 + L1_Mus2 LINE L1 5649 6565 -1 2 1284 2852 88 9 9 chr9 91667562 91667984 -32408188 + MusHAL1 LINE L1 2930 3351 -2 2 1284 658 267 52 16 chr9 91668242 91668436 -32407736 + Lx9 LINE L1 6779 6979 -665 2 1284 308 307 105 79 chr9 91668565 91668717 -32407455 - ID_B1 SINE B4 -66 158 3 2 1284 516 290 89 0 chr9 91668805 91668974 -32407198 + Lx8 LINE L1 6966 7149 -324 2 1284 471 78 0 0 chr9 91669002 91669066 -32407106 + (AAATG)n Simple_repeat Simple_repeat 2 65 0 2 1284 207 79 25 50 chr9 91669620 91669660 -32406512 + T-rich Low_complexity Low_complexity 2 40 0 2 1284 225 298 0 0 chr9 91669716 91669763 -32406409 - B1F1 SINE Alu -89 60 14 2 1284 962 163 49 5 chr9 91669779 91669803 -32406369 - B2_Mm1t SINE B2 0 193 164 2 1284 345 100 0 0 chr9 91669803 91669853 -32406319 + (CTTA)n Simple_repeat Simple_repeat 2 51 0 2 1284 1132 89 0 6 chr9 91669853 91670013 -32406159 - B2_Mm2 SINE B2 -30 163 1 2 1284 330 115 0 0 chr9 91670222 91670274 -32405898 + (TTA)n Simple_repeat Simple_repeat 1 52 0 2 1284 288 0 0 0 chr9 91670272 91670304 -32405868 + (TAG)n Simple_repeat Simple_repeat 1 32 0 2 1284 8487 141 22 3 chr9 91670346 91671810 -32404362 - Lx4A LINE L1 -109 6949 5452 2 1284 1825 158 16 3 chr9 91671810 91672115 -32404057 + RLTR27 LTR ERVK 1 309 0 2 1284 343 178 117 58 chr9 91672333 91672470 -32403702 + RLTR10-int LTR ERVK 749 893 -1094 2 1284 994 91 11 33 chr9 91672480 91672661 -32403511 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 2 1284 223 152 43 21 chr9 91672661 91672708 -32403464 + GA-rich Low_complexity Low_complexity 1 48 0 2 1284 574 94 0 23 chr9 91672709 91672796 -32403376 + RLTR10-int LTR ERVK 93 177 -6365 2 1284 736 230 0 6 chr9 91672790 91672965 -32403207 + RLTR10-int LTR ERVK 347 520 -6022 2 1284 1709 126 97 0 chr9 91672932 91673201 -32402971 + RLTR10-int LTR ERVK 4988 5282 -1260 2 1284 4881 93 23 14 chr9 91673209 91673944 -32402228 + RLTR10-int LTR ERVK 1288 1986 -1 2 1284 2305 60 6 3 chr9 91673944 91674261 -32401911 + RLTR10A LTR ERVK 1 318 -93 2 1284 491 155 0 0 chr9 91674262 91674346 -32401826 + MMERVK10C-int LTR ERVK 7498 7581 0 2 1284 1721 174 16 3 chr9 91674346 91674651 -32401521 + RLTR27 LTR ERVK 1 309 0 2 1284 198 0 0 0 chr9 91674664 91674686 -32401486 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1284 19815 127 37 8 chr9 91674686 91678085 -32398087 - Lx4A LINE L1 -432 5445 1951 2 1284 5015 162 25 0 chr9 91678092 91679032 -32397140 - Lx4A LINE L1 -4484 1393 426 2 1284 441 0 0 0 chr9 91679208 91679257 -32396915 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1284 609 233 0 22 chr9 91679308 91679444 -32396728 + MTC LTR MaLR 289 421 0 2 1284 723 267 23 19 chr9 91679763 91679977 -32396195 + B3 SINE B2 1 215 -1 2 1284 21 0 0 0 chr9 91680704 91680725 -32395447 + AT_rich Low_complexity Low_complexity 1 21 0 2 1284 395 173 12 0 chr9 91681043 91681124 -32395048 + (CATA)n Simple_repeat Simple_repeat 2 83 0 2 1284 342 0 0 0 chr9 91681289 91681327 -32394845 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1284 5784 119 20 1 chr9 91681384 91682235 -32393937 + Lx3A LINE L1 6114 6980 -1 2 1284 26 0 0 0 chr9 91682236 91682262 -32393910 + AT_rich Low_complexity Low_complexity 1 26 0 2 1284 258 114 0 41 chr9 91682583 91682656 -32393516 + A-rich Low_complexity Low_complexity 4 73 0 2 1284 948 9 0 0 chr9 91682661 91682770 -32393402 + (CAAAG)n Simple_repeat Simple_repeat 1 109 0 2 1284 4657 193 64 65 chr9 91683236 91683514 -32392658 - L1_Mur3 LINE L1 -764 5116 4832 2 1284 807 88 0 0 chr9 91683514 91683627 -32392545 + (TCCC)n Simple_repeat Simple_repeat 2 114 0 2 1284 4657 193 64 65 chr9 91683627 91683649 -32392523 - L1_Mur3 LINE L1 -1049 4831 4831 2 1284 222 37 0 0 chr9 91683649 91683676 -32392496 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2 1284 4657 193 64 65 chr9 91683676 91684628 -32391544 - L1_Mur3 LINE L1 -1049 4831 3865 2 1284 292 355 59 75 chr9 91684770 91685023 -32391149 + LTR33A_ LTR ERVL 217 465 -66 2 1284 290 344 122 0 chr9 91684995 91685126 -32391046 - B3 SINE B2 -5 211 65 2 1284 201 39 0 0 chr9 91685187 91685213 -32390959 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 2 1284 1039 140 75 5 chr9 91685555 91685742 -32390430 + L1Md_F2 LINE L1 6379 6578 -4 2 1284 357 202 0 0 chr9 91686480 91686545 -32389627 + T-rich Low_complexity Low_complexity 25 89 0 2 1284 885 187 0 0 chr9 91686545 91686695 -32389477 - B1_Mur4 SINE Alu 0 150 1 2 1284 357 202 0 0 chr9 91686695 91686718 -32389454 + T-rich Low_complexity Low_complexity 2 24 0 2 1284 233 246 40 14 chr9 91686838 91686986 -32389186 + (TA)n Simple_repeat Simple_repeat 2 153 0 2 1284 3440 25 2 0 chr9 91687553 91687948 -32388224 - MTA_Mm LTR MaLR 0 396 1 2 1284 9077 37 6 0 chr9 91687948 91689039 -32387133 - MTA_Mm-int LTR MaLR 0 1098 1 2 1284 3394 38 0 0 chr9 91689039 91689435 -32386737 - MTA_Mm LTR MaLR 0 396 1 2 1284 5633 42 3 23 chr9 91689704 91690429 -32385743 + L1Md_F2 LINE L1 5873 6582 0 2 1284 669 134 100 43 chr9 91690446 91690586 -32385586 + L1_Mus3 LINE L1 6482 6629 -9 2 1284 22 0 0 0 chr9 91690593 91690615 -32385557 + AT_rich Low_complexity Low_complexity 1 22 0 2 1284 180 0 0 0 chr9 91690716 91690736 -32385436 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 2 1284 183 400 14 12 chr9 91690941 91691037 -32385135 + MIR SINE MIR 48 144 -124 2 1284 26 0 0 0 chr9 91692513 91692539 -32383633 + AT_rich Low_complexity Low_complexity 1 26 0 2 1284 580 355 67 19 chr9 91695177 91695444 -32380728 + B4 SINE B4 1 280 -12 2 1284 243 0 0 0 chr9 91695454 91695481 -32380691 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1284 309 346 61 40 chr9 91695908 91696155 -32380017 - ERVL-B4-int LTR ERVL -1341 4373 4122 2 1284 367 313 52 8 chr9 91696164 91696344 -32379828 - ERVL-B4-int LTR ERVL -1639 4075 3818 2 1284 641 310 64 51 chr9 91696512 91696942 -32379230 - MLT1-int LTR MaLR -1237 498 61 2 1284 26 50 0 0 chr9 91698011 91698051 -32378121 + AT_rich Low_complexity Low_complexity 1 40 0 2 1284 239 256 314 0 chr9 91698693 91698779 -32377393 - MamGypLTR3 LTR Gypsy -681 158 46 2 1284 22 70 0 0 chr9 91699319 91699362 -32376810 + AT_rich Low_complexity Low_complexity 1 43 0 2 1284 833 274 14 0 chr9 91699362 91699574 -32376598 - B3 SINE B2 0 216 2 2 1284 31702 94 13 2 chr9 91699846 91704769 -32371403 + L1Md_F2 LINE L1 325 5307 -576 2 1284 3474 18 2 0 chr9 91704769 91705164 -32371008 - MTA_Mm LTR MaLR 0 396 1 2 1284 9331 25 2 2 chr9 91705164 91706262 -32369910 - MTA_Mm-int LTR MaLR 0 1098 1 2 1284 3474 18 2 0 chr9 91706262 91706657 -32369515 - MTA_Mm LTR MaLR 0 396 1 2 1284 31702 84 2 2 chr9 91706657 91706939 -32369233 + L1Md_F2 LINE L1 5308 5584 -299 2 1284 7416 77 6 5 chr9 91706939 91707933 -32368239 + L1Md_F2 LINE L1 5587 6581 -1 2 1284 1153 231 42 47 chr9 91707933 91707973 -32368199 + L1MC LINE L1 5614 5656 -2129 2 1284 6041 161 25 1 chr9 91710199 91711343 -32364829 + L1_Mur1 LINE L1 2670 3841 -2045 2 1284 750 223 66 0 chr9 91711363 91711560 -32364612 - L1_Rod LINE L1 -538 5309 5100 2 1284 1272 205 88 111 chr9 91711560 91711816 -32364356 + L1_Rod LINE L1 2120 2356 -3491 2 1284 538 157 0 18 chr9 91711816 91711926 -32364246 + Lx6 LINE L1 7341 7448 -12 2 1284 378 61 0 0 chr9 91711931 91711980 -32364192 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1284 1272 205 88 111 chr9 91711980 91712194 -32363978 + L1_Rod LINE L1 2357 2585 -3262 2 1284 259 378 7 34 chr9 91712403 91712551 -32363621 - RSINE1 SINE B4 0 165 22 2 1284 216 0 0 0 chr9 91714554 91714578 -32361594 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1284 218 320 91 20 chr9 91714632 91714731 -32361441 - PB1D10 SINE Alu -9 108 3 2 1284 24 32 0 0 chr9 91714851 91714882 -32361290 + AT_rich Low_complexity Low_complexity 1 31 0 2 1284 191 89 71 0 chr9 91715337 91715393 -32360779 + T-rich Low_complexity Low_complexity 1 60 0 2 1284 1098 95 0 0 chr9 91715412 91715559 -32360613 - B1_Mus2 SINE Alu 0 147 1 2 1284 229 248 67 106 chr9 91715782 91715962 -32360210 - Charlie10 DNA MER1_type -218 2604 2432 2 1284 287 276 87 113 chr9 91716041 91716376 -32359796 - L1MC1 LINE L1 -203 6130 5805 2 1284 230 221 123 49 chr9 91716796 91716877 -32359295 + L2 LINE L2 2820 2906 -513 2 1284 332 346 36 29 chr9 91717099 91717239 -32358933 - MLT1J1 LTR MaLR -276 168 28 2 1284 29 47 0 0 chr9 91717946 91717989 -32358183 + AT_rich Low_complexity Low_complexity 1 43 0 2 1284 21 0 0 0 chr9 91718999 91719020 -32357152 + AT_rich Low_complexity Low_complexity 1 21 0 2 1284 563 210 7 88 chr9 91719968 91720104 -32356068 + ORR1C2 LTR MaLR 70 194 -190 2 1284 390 69 0 0 chr9 91720104 91720162 -32356010 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1284 966 186 87 10 chr9 91720177 91720372 -32355800 + ORR1C2 LTR MaLR 174 383 -1 2 1284 5252 238 41 45 chr9 91720373 91721434 -32354738 + Lx7 LINE L1 6242 7326 -370 2 1284 1889 124 27 68 chr9 91721434 91721772 -32354400 + ORR1A3 LTR MaLR 1 324 -2 2 1284 5252 238 41 45 chr9 91721772 91722125 -32354047 + Lx7 LINE L1 7327 7651 -45 2 1284 369 62 0 0 chr9 91722129 91722177 -32353995 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1284 331 183 142 19 chr9 91722177 91722283 -32353889 + Lx7 LINE L1 7578 7696 0 3 1284 438 301 10 54 chr9 91722501 91722705 -32353467 - Lx8 LINE L1 -1484 5989 5795 3 1284 990 251 47 27 chr9 91722694 91722993 -32353179 + L1_Rod LINE L1 3993 4297 -1550 3 1284 1290 280 79 67 chr9 91722999 91723324 -32352848 - L1_Mur3 LINE L1 -2166 3714 3390 3 1284 603 51 0 0 chr9 91723324 91723403 -32352769 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 3 1284 1290 280 79 67 chr9 91723403 91723422 -32352750 - L1_Mur3 LINE L1 -2491 3389 3389 3 1284 426 108 0 0 chr9 91723422 91723487 -32352685 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 3 1284 1290 280 79 67 chr9 91723487 91724120 -32352052 - L1_Mur3 LINE L1 -2491 3389 2725 3 1284 2708 174 139 21 chr9 91724120 91724418 -32351754 + RMER6C LTR ERVK 1 344 -346 3 1284 315 0 0 0 chr9 91724418 91724453 -32351719 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1284 336 48 0 0 chr9 91724453 91724494 -32351678 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1284 2708 174 139 21 chr9 91724494 91724508 -32351664 + RMER6C LTR ERVK 345 357 -333 3 1284 3811 82 11 2 chr9 91724508 91725033 -32351139 - L1_Mus2 LINE L1 0 6566 6037 3 1284 2708 174 139 21 chr9 91725033 91725335 -32350837 + RMER6C LTR ERVK 358 686 -4 3 1284 893 288 39 45 chr9 91725357 91725874 -32350298 - L1_Mur3 LINE L1 -3217 2663 2150 3 1284 433 269 75 30 chr9 91725883 91726017 -32350155 - Lx6 LINE L1 -291 7169 7030 3 1284 232 121 0 0 chr9 91726053 91726086 -32350086 - U2 snRNA snRNA -155 33 1 3 1284 324 330 86 17 chr9 91727703 91727820 -32348352 - ID_B1 SINE B4 -1 223 99 3 1284 208 323 127 30 chr9 91727860 91728026 -32348146 + L2a LINE L2 2798 2979 -440 3 1284 513 0 0 0 chr9 91728340 91728397 -32347775 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1284 430 269 56 14 chr9 91728426 91728569 -32347603 + L2a LINE L2 3277 3425 -1 3 1284 522 306 39 44 chr9 91729266 91729471 -32346701 - ID_B1 SINE B4 -18 206 3 3 1284 21 0 0 0 chr9 91729931 91729952 -32346220 + AT_rich Low_complexity Low_complexity 1 21 0 3 1284 885 349 43 17 chr9 91730015 91730429 -32345743 + Lx7 LINE L1 6890 7314 -382 3 1284 243 0 0 0 chr9 91730432 91730459 -32345713 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 3 1284 2879 190 32 26 chr9 91731553 91732121 -32344051 + Lx5 LINE L1 6480 7050 0 3 1284 28 0 0 0 chr9 91732215 91732243 -32343929 + AT_rich Low_complexity Low_complexity 1 28 0 3 1284 378 0 0 0 chr9 91732476 91732518 -32343654 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1284 674 267 23 9 chr9 91733537 91733756 -32342416 + L1_Mur3 LINE L1 2634 2855 -3025 3 1284 805 297 28 79 chr9 91733750 91734360 -32341812 + L1_Mur3 LINE L1 3050 3628 -2252 3 1284 230 246 43 0 chr9 91734360 91734429 -32341743 + L1_Mur3 LINE L1 4395 4466 -1414 3 1284 503 214 19 0 chr9 91734607 91734710 -32341462 + U6 snRNA snRNA 1 105 -2 3 1284 380 161 81 0 chr9 91735086 91735173 -32340999 + Lx9 LINE L1 7328 7421 -223 3 1284 462 182 9 9 chr9 91735194 91735305 -32340867 + Lx9 LINE L1 7527 7637 -7 3 1284 923 111 30 0 chr9 91735408 91735543 -32340629 + B1_Mus1 SINE Alu 4 142 -6 3 1284 441 0 0 0 chr9 91735547 91735596 -32340576 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1284 5947 91 22 3 chr9 91736316 91737168 -32339004 - L1_Mus4 LINE L1 0 6636 5769 3 1284 6198 32 5 1 chr9 91737168 91737914 -32338258 - L1Md_F3 LINE L1 -249 6335 5587 3 1284 1691 51 19 0 chr9 91737912 91738178 -32337994 + L1Md_F3 LINE L1 6341 6584 0 3 1284 906 76 0 0 chr9 91738178 91738297 -32337875 - Lx LINE L1 -875 5779 5661 3 1284 264 300 89 10 chr9 91739492 91739593 -32336579 + Lx9 LINE L1 5866 5974 -1670 3 1284 369 0 0 0 chr9 91739716 91739757 -32336415 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1284 819 248 70 22 chr9 91739805 91740077 -32336095 + Lx9 LINE L1 6358 6642 -1002 3 1284 2712 253 57 32 chr9 91740069 91741344 -32334828 + Lx7 LINE L1 5011 6314 -1382 3 1284 469 303 53 0 chr9 91741357 91741509 -32334663 + Lx7 LINE L1 7142 7301 -395 3 1284 218 250 16 48 chr9 91741523 91741649 -32334523 + T-rich Low_complexity Low_complexity 3 124 0 3 1284 534 298 137 14 chr9 91741755 91742252 -32333920 + L1_Mur3 LINE L1 3177 3734 -2146 3 1284 301 241 13 0 chr9 91742264 91742343 -32333829 + L1_Mur3 LINE L1 3888 3967 -1913 3 1284 1398 222 128 41 chr9 91742755 91743098 -32333074 - ORR1C1 LTR MaLR 0 378 6 3 1284 286 323 0 20 chr9 91743121 91743222 -32332950 + CT-rich Low_complexity Low_complexity 3 101 0 3 1284 765 139 138 41 chr9 91743301 91743484 -32332688 + Lx3B LINE L1 5909 6104 -869 3 1284 3578 134 27 10 chr9 91743486 91744082 -32332090 + Lx3B LINE L1 6366 6971 -2 3 1284 2395 18 0 0 chr9 91744342 91744615 -32331557 + L1Md_A LINE L1 5314 5586 -297 3 1284 8489 30 0 0 chr9 91744615 91745611 -32330561 + L1Md_A LINE L1 5587 6582 0 3 1284 216 280 80 0 chr9 91745769 91745844 -32330328 + MIRb SINE MIR 180 260 -8 3 1284 565 77 11 21 chr9 91746992 91747085 -32329087 + (TCCCC)n Simple_repeat Simple_repeat 4 95 0 3 1284 373 273 87 40 chr9 91747094 91747243 -32328929 - HAL1-3A_ME LINE L1 -419 2439 2284 3 1284 267 190 0 0 chr9 91747261 91747319 -32328853 + T-rich Low_complexity Low_complexity 3 60 0 3 1284 1246 200 23 94 chr9 91749054 91749363 -32326809 + Lx2B LINE L1 6712 6998 -2 3 1285 22 0 0 0 chr9 91750528 91750550 -32325622 + AT_rich Low_complexity Low_complexity 1 22 0 3 1285 1750 56 56 8 chr9 91750671 91750905 -32325267 + L1_Mus2 LINE L1 6321 6565 -1 3 1285 330 288 19 9 chr9 91750993 91751098 -32325074 - Lx7 LINE L1 -632 7064 6959 3 1285 477 250 37 59 chr9 91751083 91751270 -32324902 + Lx7 LINE L1 7031 7213 -483 3 1285 24 0 0 0 chr9 91753001 91753025 -32323147 + AT_rich Low_complexity Low_complexity 1 24 0 3 1285 644 305 25 65 chr9 91753243 91753443 -32322729 - B3A SINE B2 -6 192 1 3 1285 540 294 100 0 chr9 91753548 91753728 -32322444 + B3 SINE B2 1 198 -18 3 1285 22 35 0 0 chr9 91754305 91754334 -32321838 + AT_rich Low_complexity Low_complexity 1 29 0 3 1285 2522 116 12 29 chr9 91754873 91755282 -32320890 - Lx3A LINE L1 -5 6976 6575 3 1285 2334 124 3 0 chr9 91755282 91755628 -32320544 + Lx3A LINE L1 6121 6467 -514 3 1285 15322 18 0 0 chr9 91755626 91757402 -32318770 + L1Md_T LINE L1 3811 5586 -297 3 1285 8079 48 0 8 chr9 91757402 91758406 -32317766 + L1Md_T LINE L1 5587 6582 0 3 1285 814 117 0 0 chr9 91758406 91758526 -32317646 + Lx3A LINE L1 6454 6573 -408 3 1285 1819 47 4 21 chr9 91758603 91758842 -32317330 + L1Md_F3 LINE L1 6339 6573 -11 3 1285 823 301 94 35 chr9 91759394 91759819 -32316353 - MLT1E2 LTR MaLR -33 591 136 3 1285 22 0 0 0 chr9 91760778 91760800 -32315372 + AT_rich Low_complexity Low_complexity 1 22 0 3 1285 2792 79 5 24 chr9 91761090 91761503 -32314669 + L1Md_F2 LINE L1 6177 6581 -1 3 1285 868 153 98 17 chr9 91761583 91761756 -32314416 + B2_Mm2 SINE B2 1 187 -8 3 1285 571 347 102 17 chr9 91764007 91764417 -32311755 - Lx8 LINE L1 -123 7350 6906 3 1285 360 0 0 0 chr9 91764896 91764936 -32311236 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1285 349 125 125 0 chr9 91765969 91766033 -32310139 - RMER6D LTR ERVK -91 629 558 3 1285 8790 70 5 1 chr9 91766157 91767327 -32308845 - L1_Mm LINE L1 -1220 4663 3489 3 1285 2462 93 3 0 chr9 91767319 91767652 -32308520 + L1Md_F2 LINE L1 5805 6138 -444 3 1285 1378 105 29 5 chr9 91767652 91767862 -32308310 + L1_Mus1 LINE L1 6351 6565 -2 3 1285 1295 160 22 4 chr9 91767901 91768127 -32308045 - RMER6-int LTR ERVK -1537 1640 1411 3 1285 2622 119 24 30 chr9 91768113 91768579 -32307593 - RMER6-int LTR ERVK -2241 936 474 3 1285 431 121 0 15 chr9 91768605 91768672 -32307500 - RMER6-int LTR ERVK -3111 66 1 3 1285 782 175 75 0 chr9 91768672 91768832 -32307340 - RMER6D LTR ERVK 0 720 549 3 1285 275 138 121 0 chr9 91768832 91768890 -32307282 - RMER6-int LTR ERVK -454 2723 2659 3 1285 1945 237 21 12 chr9 91768893 91769324 -32306848 - Lx6 LINE L1 -2 7458 7024 3 1285 309 321 110 31 chr9 91769854 91770108 -32306064 + L1MA8 LINE L1 5943 6216 -75 3 1285 663 48 0 0 chr9 91770108 91770191 -32305981 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1285 237 261 15 0 chr9 91770387 91770452 -32305720 - Lx7 LINE L1 -18 7678 7613 3 1285 441 0 0 0 chr9 91770480 91770529 -32305643 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1285 250 285 164 40 chr9 91770541 91770742 -32305430 - Lx7 LINE L1 -284 7412 7187 3 1285 194 0 39 0 chr9 91770914 91770940 -32305232 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3 1285 636 268 19 7 chr9 91773208 91773362 -32302810 + RSINE1 SINE B4 10 165 0 3 1285 2165 253 67 29 chr9 91773845 91774716 -32301456 + Lx5 LINE L1 6245 7048 -2 3 1285 207 0 0 0 chr9 91775049 91775072 -32301100 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1285 1022 110 0 14 chr9 91775072 91775211 -32300961 - B1_Mus1 SINE Alu -7 141 3 3 1285 12926 150 58 82 chr9 91775956 91777527 -32298645 - Lx5 LINE L1 -11 7039 5375 3 1285 1615 174 13 20 chr9 91777527 91777831 -32298341 - RLTR12A LTR ERVK -4 564 263 3 1285 12926 150 58 82 chr9 91777831 91780071 -32296101 - Lx5 LINE L1 -11 5374 2999 3 1285 2542 192 51 32 chr9 91780084 91780471 -32295701 - Lx3C LINE L1 -2 6974 6578 3 1285 4570 96 28 43 chr9 91780471 91781234 -32294938 + RMER17A LTR ERVK 1 751 0 3 1285 2542 192 51 32 chr9 91781234 91781437 -32294735 - Lx3C LINE L1 -399 6577 6373 3 1285 7283 65 0 2 chr9 91781449 91782792 -32293380 - L1Md_F2 LINE L1 -2 6580 5242 3 1285 6489 67 0 2 chr9 91782789 91783667 -32292505 + L1Md_F2 LINE L1 4358 5233 -650 3 1285 4789 159 19 9 chr9 91783665 91785021 -32291151 - Lx3C LINE L1 -590 6386 5013 3 1285 4247 131 25 43 chr9 91785016 91785825 -32290347 - L1_Mur2 LINE L1 -4523 1363 571 3 1285 502 165 0 20 chr9 91785828 91785927 -32290245 - Lx3C LINE L1 -2815 3062 2966 3 1285 331 132 0 19 chr9 91785927 91785981 -32290191 - RLTR25A LTR ERVK -2 1101 1049 3 1285 379 284 67 126 chr9 91785987 91786345 -32289827 - Lx3C LINE L1 -6170 916 580 3 1285 21 36 0 0 chr9 91786770 91786798 -32289374 + AT_rich Low_complexity Low_complexity 1 28 0 3 1285 439 310 99 37 chr9 91786875 91787066 -32289106 - B3A SINE B2 0 216 14 3 1285 6482 76 15 1 chr9 91787115 91788362 -32287810 + L1VL1 LINE L1 442 1706 -4177 3 1285 16015 98 66 2 chr9 91788360 91790904 -32285268 + L1VL1 LINE L1 2798 5504 -379 3 1285 1304 71 22 0 chr9 91790904 91791087 -32285085 + L1_Mus1 LINE L1 6381 6567 0 3 1285 29 34 0 48 chr9 91791142 91791204 -32284968 + AT_rich Low_complexity Low_complexity 1 59 0 3 1285 373 262 70 62 chr9 91791556 91791812 -32284360 + Lx9 LINE L1 5770 6027 -1617 3 1285 395 100 0 32 chr9 91791914 91791976 -32284196 + B1_Mus1 SINE Alu 1 60 -88 3 1285 967 150 0 53 chr9 91791978 91792168 -32284004 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1285 795 46 0 27 chr9 91792192 91792303 -32283869 + B1_Mus2 SINE Alu 40 147 0 3 1285 279 0 0 0 chr9 91792475 91792506 -32283666 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1285 2154 287 88 20 chr9 91792508 91793365 -32282807 + Lx9 LINE L1 6357 7271 -373 3 1285 321 238 0 0 chr9 91793520 91793621 -32282551 + (TG)n Simple_repeat Simple_repeat 2 102 0 3 1285 380 237 31 0 chr9 91793895 91793992 -32282180 + Lx9 LINE L1 7365 7464 -180 3 1285 504 0 0 0 chr9 91793996 91794052 -32282120 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1285 352 242 25 8 chr9 91794054 91794175 -32281997 + Lx9 LINE L1 7513 7635 -9 3 1285 633 208 0 8 chr9 91794282 91794408 -32281764 - RMER19B LTR ERVK -6 896 772 3 1285 514 206 98 65 chr9 91794409 91794595 -32281577 - RMER19C LTR ERVK -713 189 1 3 1285 276 262 12 0 chr9 91794756 91794840 -32281332 + L1_Mur1 LINE L1 684 768 -6216 3 1285 858 247 15 23 chr9 91794966 91795231 -32280941 + L1_Mur1 LINE L1 772 1034 -5950 3 1285 2762 119 22 0 chr9 91795244 91795706 -32280466 + L1_Mur1 LINE L1 2526 2997 -2889 3 1285 3513 138 8 14 chr9 91795710 91796334 -32279838 + L1_Mur1 LINE L1 4536 5155 -722 3 1285 340 287 92 71 chr9 91796336 91796691 -32279481 - RLTR9E LTR ERVK -18 391 1 3 1285 687 189 14 0 chr9 91796691 91796839 -32279333 + L1_Mur2 LINE L1 5152 5301 -576 3 1285 983 88 0 0 chr9 91796834 91796982 -32279190 - MusHAL1 LINE L1 -597 2115 1968 3 1285 1150 153 58 120 chr9 91796982 91797256 -32278916 + LTRIS4 LTR ERV1 1 257 -250 4 1285 480 308 63 29 chr9 91798263 91798437 -32277735 - B3A SINE B2 -18 180 1 4 1285 27 0 0 0 chr9 91798895 91798922 -32277250 + AT_rich Low_complexity Low_complexity 1 27 0 4 1285 8885 98 10 18 chr9 91799986 91801468 -32274704 - Lx3A LINE L1 0 6981 5515 4 1285 595 255 0 62 chr9 91803900 91804046 -32272126 - RSINE1 SINE B4 0 165 29 4 1285 576 248 65 14 chr9 91804294 91804433 -32271739 + B1_Mm SINE Alu 1 146 -1 4 1285 22 35 0 0 chr9 91805069 91805098 -32271074 + AT_rich Low_complexity Low_complexity 1 29 0 4 1285 1187 69 62 11 chr9 91805174 91805351 -32270821 - B2_Mm2 SINE B2 -8 187 2 4 1285 578 290 0 7 chr9 91805673 91805812 -32270360 + B3 SINE B2 1 138 -78 4 1285 1556 192 132 11 chr9 91806815 91807179 -32268993 - L1Md_F LINE L1 -5805 714 307 4 1285 256 219 16 0 chr9 91807336 91807400 -32268772 + Lx6 LINE L1 7385 7449 -11 4 1285 581 329 50 36 chr9 91807400 91807757 -32268415 - Lx7 LINE L1 -343 7353 6992 4 1285 399 346 0 0 chr9 91807816 91807917 -32268255 + Lx7 LINE L1 6584 6684 -1012 4 1285 482 345 76 45 chr9 91807990 91808567 -32267605 - Lx8 LINE L1 -75 7398 6804 4 1285 920 215 96 22 chr9 91809775 91810098 -32266074 + L1_Mur3 LINE L1 1514 1860 -4020 4 1285 289 342 0 120 chr9 91810572 91810705 -32265467 - PB1D7 SINE Alu -2 118 2 4 1285 212 156 99 99 chr9 91810863 91810934 -32265238 + MIR3 SINE MIR 117 187 -21 4 1285 7739 42 9 0 chr9 91811116 91812474 -32263698 - L1Md_F2 LINE L1 0 6582 5211 4 1285 195 129 0 0 chr9 91813267 91813298 -32262874 + (TGG)n Simple_repeat Simple_repeat 1 31 0 4 1285 1132 249 149 14 chr9 91813320 91813424 -32262748 + MTD LTR MaLR 9 113 -306 4 1285 198 0 0 0 chr9 91813424 91813446 -32262726 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1285 1132 249 149 14 chr9 91813446 91813691 -32262481 + MTD LTR MaLR 114 404 -15 4 1285 260 272 37 12 chr9 91813900 91813982 -32262190 + MLT1B LTR MaLR 16 99 -291 4 1285 423 173 0 0 chr9 91814622 91814703 -32261469 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1285 412 345 8 0 chr9 91815189 91815308 -32260864 - MIR3 SINE MIR -21 187 68 4 1285 415 296 35 41 chr9 91815488 91815657 -32260515 - LTR81A LTR ERV1? 0 1350 1183 4 1285 707 0 12 0 chr9 91816075 91816158 -32260014 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 1285 291 71 0 0 chr9 91817492 91817534 -32258638 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1285 1342 68 10 40 chr9 91817584 91817784 -32258388 - B2_Mm2 SINE B2 0 195 2 4 1285 1744 122 93 7 chr9 91817788 91818078 -32258094 + L1_Mus4 LINE L1 6309 6623 -13 4 1285 1284 140 18 5 chr9 91818096 91818319 -32257853 + Lx3_Mus LINE L1 6257 6482 -527 4 1285 1871 141 43 46 chr9 91818319 91818691 -32257481 + L1_Mus1 LINE L1 6193 6563 -4 4 1285 3075 72 31 29 chr9 91818708 91819164 -32257008 + Lx3_Mus LINE L1 6553 7009 0 4 1285 204 286 0 0 chr9 91819414 91819456 -32256716 + polypyrimidine Low_complexity Low_complexity 6 47 0 4 1285 262 200 0 12 chr9 91819734 91819815 -32256357 + L1Md_A LINE L1 632 711 -6013 4 1285 8651 59 3 1 chr9 91819813 91820966 -32255206 + L1Md_F3 LINE L1 4431 5585 -298 4 1285 8147 40 9 0 chr9 91820967 91821954 -32254218 + L1Md_F3 LINE L1 5587 6582 -2 4 1285 231 303 72 51 chr9 91822116 91822311 -32253861 - RLTR21 LTR ERVK -307 1265 1067 4 1285 279 333 12 0 chr9 91822426 91822507 -32253665 - PB1D10 SINE Alu -5 112 31 4 1285 234 0 0 0 chr9 91823849 91823875 -32252297 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1285 229 305 92 31 chr9 91825220 91825318 -32250854 - L2a LINE L2 -15 3411 3308 4 1285 333 0 0 0 chr9 91825454 91825491 -32250681 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1285 246 270 0 13 chr9 91825869 91825944 -32250228 + CT-rich Low_complexity Low_complexity 1 74 0 4 1285 287 65 22 0 chr9 91826000 91826046 -32250126 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1285 1438 293 39 9 chr9 91826065 91826606 -32249566 - Lx7 LINE L1 -428 7268 6712 4 1285 683 245 85 26 chr9 91826697 91826922 -32249250 - MTD LTR MaLR -14 407 166 4 1285 407 244 0 0 chr9 91826891 91826977 -32249195 + B3 SINE B2 127 212 -4 4 1285 21 36 0 0 chr9 91827084 91827112 -32249060 + AT_rich Low_complexity Low_complexity 1 28 0 4 1285 631 296 87 38 chr9 91827376 91827629 -32248543 - MTD LTR MaLR 0 379 134 4 1285 22 0 0 0 chr9 91828325 91828347 -32247825 + AT_rich Low_complexity Low_complexity 1 22 0 4 1285 6289 122 30 22 chr9 91829895 91830917 -32245255 + Lx3C LINE L1 5946 6975 -1 4 1285 31 26 0 0 chr9 91832339 91832377 -32243795 + AT_rich Low_complexity Low_complexity 1 38 0 4 1285 1019 197 103 28 chr9 91832443 91832725 -32243447 - Lx5 LINE L1 0 7050 6748 4 1285 234 0 0 0 chr9 91832754 91832780 -32243392 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1285 1036 178 94 43 chr9 91832784 91833019 -32243153 - Lx4A LINE L1 -7 7051 6805 4 1285 381 330 81 9 chr9 91834795 91835006 -32241166 - MIR SINE MIR -14 248 23 4 1285 200 214 0 18 chr9 91835023 91835080 -32241092 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1285 306 0 0 0 chr9 91835106 91835140 -32241032 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 1285 227 234 0 21 chr9 91835197 91835245 -32240927 - MER5A DNA MER1_type -76 113 67 4 1285 27 0 0 0 chr9 91835369 91835396 -32240776 + AT_rich Low_complexity Low_complexity 1 27 0 4 1285 3079 47 5 3 chr9 91837522 91837909 -32238263 - L1Md_F3 LINE L1 0 6584 6197 4 1285 9214 42 3 0 chr9 91837909 91839076 -32237096 + L1_Mm LINE L1 1479 2649 -3234 4 1285 5154 69 3 16 chr9 91839846 91840535 -32235637 + L1_Mus2 LINE L1 5886 6565 -1 4 1285 342 0 0 0 chr9 91840666 91840704 -32235468 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1285 581 352 103 65 chr9 91840710 91841311 -32234861 + MLT1-int LTR MaLR 278 927 -562 4 1285 225 0 0 0 chr9 91841311 91841336 -32234836 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 4 1285 278 332 149 51 chr9 91841336 91841429 -32234743 + MLT1-int LTR MaLR 928 1032 -457 4 1285 869 306 26 136 chr9 91841579 91842041 -32234131 + MLT1-int LTR MaLR 961 1371 0 4 1285 336 188 62 0 chr9 91842070 91842134 -32234038 - B3A SINE B2 -125 73 6 4 1285 324 0 0 0 chr9 91843866 91843902 -32232270 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1285 456 19 0 0 chr9 91843902 91843954 -32232218 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1285 26 0 0 0 chr9 91844344 91844370 -32231802 + AT_rich Low_complexity Low_complexity 1 26 0 4 1285 803 264 53 25 chr9 91845089 91845459 -32230713 + L1_Rod LINE L1 1719 2106 -3741 4 1285 2238 275 90 28 chr9 91845465 91846265 -32229907 + Lx7 LINE L1 6341 7190 -506 4 1285 372 104 0 0 chr9 91846265 91846332 -32229840 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1285 1234 256 45 59 chr9 91846344 91846838 -32229334 - L1_Rod LINE L1 -194 5653 5167 4 1285 442 348 65 0 chr9 91846854 91847055 -32229117 - Lx9 LINE L1 -1074 6570 6357 4 1285 253 47 0 44 chr9 91847065 91847110 -32229062 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1285 1204 226 18 5 chr9 91847323 91847652 -32228520 - Lx9 LINE L1 -1670 5974 5599 4 1285 1574 246 26 20 chr9 91847656 91848147 -32228025 + Lx6 LINE L1 5111 5638 -1822 4 1285 1441 255 62 0 chr9 91848154 91848522 -32227650 + Lx9 LINE L1 6621 7011 -633 4 1285 854 248 51 33 chr9 91848554 91848829 -32227343 + Lx9 LINE L1 7198 7477 -167 4 1285 662 281 54 25 chr9 91849843 91850047 -32226125 - B3 SINE B2 -6 210 1 4 1285 256 333 40 10 chr9 91850430 91850530 -32225642 + PB1D10 SINE Alu 6 108 -9 4 1285 241 300 0 0 chr9 91850559 91850609 -32225563 + ID4_ SINE ID 12 61 -22 4 1285 927 83 20 20 chr9 91851007 91851019 -32225153 - B1_Mus1 SINE Alu -1 147 138 4 1285 212 0 36 0 chr9 91851019 91851047 -32225125 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1285 927 83 20 20 chr9 91851047 91851181 -32224991 - B1_Mus1 SINE Alu -11 137 1 4 1285 711 221 0 0 chr9 91851385 91851516 -32224656 - B1_Mur1 SINE Alu -18 131 1 4 1285 346 297 76 42 chr9 91851776 91851920 -32224252 - ID_B1 SINE B4 0 224 76 4 1285 190 236 107 40 chr9 91852471 91852546 -32223626 - MIR SINE MIR -120 142 63 4 1285 23 54 0 0 chr9 91852825 91852862 -32223310 + AT_rich Low_complexity Low_complexity 1 37 0 4 1285 198 0 0 0 chr9 91853042 91853064 -32223108 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 1285 21 0 0 0 chr9 91853076 91853097 -32223075 + AT_rich Low_complexity Low_complexity 1 21 0 4 1285 435 19 0 0 chr9 91853328 91853380 -32222792 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1285 198 0 0 0 chr9 91855524 91855546 -32220626 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1285 522 46 0 0 chr9 91855546 91855610 -32220562 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1285 238 151 9 36 chr9 91857043 91857153 -32219019 + (TA)n Simple_repeat Simple_repeat 2 108 0 4 1285 216 175 0 0 chr9 91857138 91857201 -32218971 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 4 1285 635 290 26 0 chr9 91859747 91859902 -32216270 + B3A SINE B2 1 159 -39 4 1285 26 82 0 0 chr9 91859955 91860016 -32216156 + AT_rich Low_complexity Low_complexity 1 61 0 4 1285 27 0 0 0 chr9 91860327 91860354 -32215818 + AT_rich Low_complexity Low_complexity 1 27 0 4 1285 348 359 7 20 chr9 91860417 91860565 -32215607 + RSINE1 SINE B4 4 149 -16 4 1285 527 74 12 0 chr9 91860567 91860648 -32215524 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 1285 24966 121 69 14 chr9 91860764 91861985 -32214187 - L1_Mus4 LINE L1 -3 6997 5376 4 1285 5119 70 1 6 chr9 91861985 91862663 -32213509 + L1Md_F2 LINE L1 5889 6563 -19 4 1285 24966 159 13 31 chr9 91862663 91867366 -32208806 - L1_Mus4 LINE L1 -508 5375 755 4 1285 618 311 48 27 chr9 91867460 91867702 -32208470 - MTC-int LTR MaLR -384 1196 729 4 1285 515 195 0 9 chr9 91867845 91867959 -32208213 + (CATA)n Simple_repeat Simple_repeat 2 114 0 4 1285 338 68 0 0 chr9 91867959 91868003 -32208169 + HAL1-3A_ME LINE L1 1975 2018 -840 5 1285 1111 65 0 0 chr9 91868631 91868770 -32207402 + B1_Mm SINE Alu 2 140 -7 5 1285 2347 314 116 39 chr9 91870111 91871770 -32204402 - Lx8 LINE L1 -28 7445 5616 5 1285 857 264 68 4 chr9 91871767 91872045 -32204127 + L1_Mur3 LINE L1 4830 5125 -755 5 1285 1105 241 25 0 chr9 91872070 91872348 -32203824 - Lx8 LINE L1 -1156 4724 4440 5 1285 669 283 71 40 chr9 91872654 91873077 -32203095 - L1MA4 LINE L1 -392 5908 5473 5 1285 404 280 134 22 chr9 91873110 91873430 -32202742 - L1MA4 LINE L1 -804 5496 5129 5 1285 1800 242 21 18 chr9 91873433 91873867 -32202305 - Lx9 LINE L1 -513 7131 6697 5 1285 344 230 40 149 chr9 91873939 91874026 -32202146 + Lx9 LINE L1 6324 6405 -1239 5 1285 203 0 37 0 chr9 91874026 91874053 -32202119 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1285 344 230 40 149 chr9 91874053 91874139 -32202033 + Lx9 LINE L1 6406 6478 -1166 5 1285 3688 257 83 18 chr9 91874135 91875233 -32200939 + Lx2A LINE L1 5686 6854 -154 5 1285 923 167 65 40 chr9 91875233 91875433 -32200739 + Lx9 LINE L1 6490 6694 -950 5 1285 280 254 214 47 chr9 91875431 91875646 -32200526 - L1_Mur2 LINE L1 -921 4956 4706 5 1285 269 314 81 16 chr9 91875828 91875951 -32200221 - ORR1E LTR MaLR -187 172 42 5 1285 289 284 67 0 chr9 91876055 91876189 -32199983 + L1M2 LINE L1 4480 4622 -1521 5 1285 360 0 0 0 chr9 91876189 91876229 -32199943 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1285 514 296 31 6 chr9 91876248 91876408 -32199764 - MTEb LTR MaLR -215 164 1 5 1285 183 275 25 0 chr9 91878785 91878825 -32197347 + L3 LINE CR1 3028 3068 -1421 5 1285 369 0 0 0 chr9 91879875 91879916 -32196256 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1285 237 360 47 0 chr9 91880021 91880107 -32196065 - 5S rRNA rRNA -20 101 12 5 1285 832 237 11 17 chr9 91880297 91880477 -32195695 + B3 SINE B2 1 179 -37 5 1285 267 103 0 0 chr9 91880498 91880537 -32195635 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1285 222 37 0 0 chr9 91880729 91880756 -32195416 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 1285 253 116 0 0 chr9 91880756 91880799 -32195373 - Lx3_Mus LINE L1 -571 6438 6396 5 1285 990 62 0 0 chr9 91880798 91880927 -32195245 - Lx3_Mus LINE L1 -1133 5876 5748 5 1285 222 37 0 0 chr9 91880927 91880954 -32195218 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 5 160 3894 99 38 7 chr9 91880954 91881532 -32194640 - Lx3_Mus LINE L1 -18 6991 6396 5 1286 1421 64 0 0 chr9 91881532 91881719 -32194453 - Lx3_Mus LINE L1 -1106 5875 5689 5 1286 1136 83 6 16 chr9 91882029 91882212 -32193960 - L1Md_F2 LINE L1 -2 6580 6400 5 1286 363 65 12 61 chr9 91884677 91884759 -32191413 + (CAAAAA)n Simple_repeat Simple_repeat 2 79 0 5 1286 324 312 7 84 chr9 91884767 91884921 -32191251 + B4A SINE B4 4 145 -147 5 1286 24 67 0 0 chr9 91885050 91885095 -32191077 + AT_rich Low_complexity Low_complexity 1 45 0 5 1286 859 265 14 23 chr9 91885098 91885314 -32190858 + B3 SINE B2 2 215 -1 5 1286 31 26 0 0 chr9 91885576 91885614 -32190558 + AT_rich Low_complexity Low_complexity 1 38 0 5 1286 3415 120 92 2 chr9 91885619 91886185 -32189987 + Lx2 LINE L1 6372 6988 -9 5 1286 2159 45 4 4 chr9 91886301 91886571 -32189601 + L1_Mus1 LINE L1 6291 6560 -7 5 1286 342 0 0 0 chr9 91886603 91886641 -32189531 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1286 363 73 0 0 chr9 91887307 91887362 -32188810 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1286 339 65 0 0 chr9 91887362 91887408 -32188764 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1286 223 365 74 7 chr9 91888347 91888496 -32187676 + MIRm SINE MIR 70 228 -48 5 1286 216 86 0 0 chr9 91888597 91888632 -32187540 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 5 1286 21 36 0 0 chr9 91889090 91889118 -32187054 + AT_rich Low_complexity Low_complexity 1 28 0 5 1286 3477 113 8 9 chr9 91889155 91889682 -32186490 + Lx LINE L1 6117 6642 -12 5 1286 230 189 37 86 chr9 91889689 91889770 -32186402 + Lx4B LINE L1 6135 6211 -847 5 1286 243 152 0 0 chr9 91890018 91890064 -32186108 + (TATG)n Simple_repeat Simple_repeat 3 48 0 5 1286 8912 159 14 1 chr9 91890444 91892000 -32184172 - Lx LINE L1 -168 5715 4139 5 1286 5833 119 55 5 chr9 91891998 91892893 -32183279 + Lx LINE L1 5708 6647 -7 5 1286 288 53 0 0 chr9 91893395 91893433 -32182739 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1286 1767 27 31 4 chr9 91894259 91894485 -32181687 - L1Md_F3 LINE L1 -1 6583 6352 5 1286 463 248 0 0 chr9 91894485 91894590 -32181582 - ORR1A0 LTR MaLR -241 105 1 5 1286 604 339 72 30 chr9 91895176 91895441 -32180731 + B4 SINE B4 9 284 -8 5 1286 254 214 25 41 chr9 91895474 91895596 -32180576 + (TAAA)n Simple_repeat Simple_repeat 1 120 0 5 1286 234 128 0 0 chr9 91896600 91896639 -32179533 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1286 1002 291 91 41 chr9 91896660 91897265 -32178907 + L1MA4 LINE L1 4422 5056 -1087 5 1286 296 147 73 85 chr9 91897280 91897362 -32178810 + RLTR25B LTR ERVK 429 509 -519 5 1286 700 54 0 0 chr9 91897303 91897395 -32178777 + B1_Mus2 SINE Alu 46 137 -10 5 1286 396 0 0 0 chr9 91897395 91897439 -32178733 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1286 352 337 25 0 chr9 91897446 91897609 -32178563 + L1MA4 LINE L1 5665 5831 -469 5 1286 529 126 0 0 chr9 91897770 91897857 -32178315 - L1_Mur2 LINE L1 -1810 4067 3981 5 1286 6123 142 8 1 chr9 91897857 91898850 -32177322 + Lx2A LINE L1 6001 7000 -8 5 1286 459 0 0 0 chr9 91898990 91899041 -32177131 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1286 476 253 0 0 chr9 91899045 91899140 -32177032 - Lx8 LINE L1 -278 7195 7101 5 1286 2285 168 153 84 chr9 91899343 91899655 -32176517 - RMER6C LTR ERVK 0 690 346 5 1286 189 132 0 0 chr9 91899655 91899693 -32176479 + (CACTG)n Simple_repeat Simple_repeat 1 38 0 5 1286 2285 168 153 84 chr9 91899693 91899727 -32176445 - RMER6C LTR ERVK -345 345 332 5 1286 1174 68 0 0 chr9 91899727 91899874 -32176298 - B1_Mus2 SINE Alu 0 147 1 5 1286 2285 168 153 84 chr9 91899874 91900165 -32176007 - RMER6C LTR ERVK -359 331 8 5 1286 315 0 0 0 chr9 91900186 91900221 -32175951 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1286 243 0 0 0 chr9 91900221 91900247 -32175925 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1286 279 0 0 0 chr9 91900320 91900351 -32175821 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 5 1286 1314 38 0 0 chr9 91900355 91900515 -32175657 + (TAGA)n Simple_repeat Simple_repeat 1 160 0 5 1286 4882 39 17 0 chr9 91900635 91901226 -32174946 + L1Md_F2 LINE L1 5980 6580 -2 5 1286 423 0 0 0 chr9 91901400 91901447 -32174725 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1286 516 354 94 71 chr9 91901448 91901703 -32174469 - B4A SINE B4 -22 270 10 5 1286 308 253 35 0 chr9 91901767 91901854 -32174318 + CT-rich Low_complexity Low_complexity 3 92 0 5 1286 8846 111 9 8 chr9 91902322 91903743 -32172429 - L1_Mur1 LINE L1 -1534 4352 2931 5 1286 1579 98 8 0 chr9 91903748 91903984 -32172188 + Lx3C LINE L1 6120 6357 -619 5 1286 2587 104 5 3 chr9 91904019 91904394 -32171778 + Lx3A LINE L1 6102 6477 -504 5 1286 278 26 0 25 chr9 91904443 91904483 -32171689 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1286 25 65 0 0 chr9 91905535 91905581 -32170591 + AT_rich Low_complexity Low_complexity 1 46 0 5 1286 420 20 0 0 chr9 91905823 91905872 -32170300 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1286 381 357 84 0 chr9 91905904 91906058 -32170114 - B4A SINE B4 -125 167 1 5 1286 201 381 6 11 chr9 91907315 91907490 -32168682 + (CA)n Simple_repeat Simple_repeat 1 174 0 5 1286 375 222 40 0 chr9 91907540 91907639 -32168533 + Lx6 LINE L1 7354 7456 -4 5 1286 410 164 0 0 chr9 91907639 91907706 -32168466 + B3 SINE B2 27 93 -123 5 1286 477 257 35 0 chr9 91907757 91907870 -32168302 + B3 SINE B2 95 211 -5 5 1286 305 311 133 13 chr9 91907995 91908072 -32168100 + Charlie12 DNA MER1_type 2 88 -2785 5 1286 4732 53 0 2 chr9 91908072 91908661 -32167511 + L1_Mus1 LINE L1 5980 6567 0 5 1286 305 311 133 13 chr9 91908661 91908733 -32167439 + Charlie12 DNA MER1_type 89 169 -2704 5 1286 190 95 48 0 chr9 91911244 91911286 -32164886 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1286 450 53 0 0 chr9 91911764 91911821 -32164351 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 5 1286 389 22 0 0 chr9 91911824 91911869 -32164303 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 5 1286 1156 96 6 6 chr9 91911869 91912047 -32164125 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 1286 225 108 0 0 chr9 91912085 91912122 -32164050 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 5 1286 22 0 0 0 chr9 91913008 91913030 -32163142 + AT_rich Low_complexity Low_complexity 1 22 0 5 1286 207 220 0 0 chr9 91913317 91913367 -32162805 + GA-rich Low_complexity Low_complexity 4 53 0 5 1286 1664 206 24 64 chr9 91913399 91913773 -32162399 - ORR1B2 LTR MaLR -8 359 1 5 1286 2291 217 77 31 chr9 91914245 91914398 -32161774 - Lx2B LINE L1 0 7000 6849 5 1286 507 69 0 0 chr9 91914398 91914470 -32161702 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1286 2291 217 77 31 chr9 91914470 91914901 -32161271 - Lx2B LINE L1 -152 6848 6389 5 1286 4501 168 27 1 chr9 91914901 91915797 -32160375 + Lx2B LINE L1 5491 6402 -598 5 1286 626 325 0 34 chr9 91915820 91916024 -32160148 - B3A SINE B2 0 198 2 5 1286 231 151 0 54 chr9 91916390 91916446 -32159726 + T-rich Low_complexity Low_complexity 2 54 0 5 1286 437 81 27 0 chr9 91917077 91917151 -32159021 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 5 1286 372 94 0 0 chr9 91917151 91917203 -32158969 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1286 390 294 20 79 chr9 91917445 91917470 -32158702 - B2_Mm2 SINE B2 0 195 171 5 1286 270 0 0 0 chr9 91917470 91917500 -32158672 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1286 654 55 0 0 chr9 91917500 91917590 -32158582 + (GA)n Simple_repeat Simple_repeat 1 91 0 5 1286 390 294 20 79 chr9 91917590 91917766 -32158406 - B2_Mm2 SINE B2 -25 170 7 5 1286 1246 76 11 5 chr9 91918964 91919150 -32157022 - L1_Mus3 LINE L1 0 6638 6452 5 1286 331 347 218 15 chr9 91919958 91920224 -32155948 + MER70B LTR ERVL 1 320 -258 5 1286 23 33 0 0 chr9 91920527 91920557 -32155615 + AT_rich Low_complexity Low_complexity 1 30 0 5 1286 2733 167 75 143 chr9 91921024 91921785 -32154387 + RMER6D LTR ERVK 6 714 -6 5 1286 4094 98 5 25 chr9 91922461 91923056 -32153116 - MT2B2 LTR ERVL 0 584 2 5 1286 21 36 0 0 chr9 91925276 91925304 -32150868 + AT_rich Low_complexity Low_complexity 1 28 0 6 1286 716 339 73 12 chr9 91925332 91925580 -32150592 + B4A SINE B4 22 284 -8 6 1286 331 271 124 20 chr9 91926059 91926321 -32149851 - L1_Rod LINE L1 -409 5888 5537 6 1286 2397 165 2 15 chr9 91926362 91926774 -32149398 - MTB_Mm LTR MaLR 0 407 1 6 1286 919 209 179 47 chr9 91926933 91927213 -32148959 - Lx7 LINE L1 0 7696 7390 6 1286 750 11 0 0 chr9 91927213 91927300 -32148872 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 6 1286 919 209 179 47 chr9 91927300 91927405 -32148767 - Lx7 LINE L1 -307 7389 7260 6 1286 35734 72 1 8 chr9 91927415 91933990 -32142182 - L1Md_A LINE L1 0 6582 98 6 1286 2919 171 431 6 chr9 91933990 91934894 -32141278 - L1_Mur1 LINE L1 -616 5270 3982 6 1286 1154 168 11 0 chr9 91934892 91935077 -32141095 + Lx4A LINE L1 6665 6851 -207 6 1286 204 158 0 0 chr9 91935089 91935127 -32141045 + T-rich Low_complexity Low_complexity 1 38 0 6 1286 7649 66 2 6 chr9 91935129 91936185 -32139987 - L1_Mus2 LINE L1 0 6566 5514 6 1286 2509 232 41 7 chr9 91936183 91936739 -32139433 - Lx7 LINE L1 -554 7142 6568 6 1286 36 0 0 0 chr9 91936817 91936853 -32139319 + AT_rich Low_complexity Low_complexity 1 36 0 6 1286 1155 217 58 89 chr9 91936861 91937255 -32138917 - Lx7 LINE L1 -1133 6563 6182 6 1286 240 192 269 0 chr9 91937281 91937333 -32138839 + B3 SINE B2 6 71 -145 6 1286 307 333 22 43 chr9 91937525 91937663 -32138509 - MTD LTR MaLR -267 152 18 6 1286 24 0 0 0 chr9 91937958 91937982 -32138190 + AT_rich Low_complexity Low_complexity 1 24 0 6 1286 252 200 0 0 chr9 91939586 91939641 -32136531 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1286 25 108 0 0 chr9 91940989 91941091 -32135081 + AT_rich Low_complexity Low_complexity 1 102 0 6 1286 21 0 0 0 chr9 91941953 91941974 -32134198 + AT_rich Low_complexity Low_complexity 1 21 0 6 1286 240 186 0 0 chr9 91942459 91942518 -32133654 - Lx9 LINE L1 -2 7642 7584 6 1286 21 36 0 0 chr9 91943153 91943181 -32132991 + AT_rich Low_complexity Low_complexity 1 28 0 6 1286 233 359 9 37 chr9 91943241 91943348 -32132824 + ORR1D2 LTR MaLR 1 104 -266 6 1286 763 248 65 10 chr9 91944043 91944231 -32131941 + B3 SINE B2 1 200 -16 6 1286 228 67 0 0 chr9 91944231 91944261 -32131911 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 6 1286 763 248 65 10 chr9 91944261 91944272 -32131900 + B3 SINE B2 201 211 -5 6 1286 324 396 64 30 chr9 91944562 91944859 -32131313 + L1M5 LINE L1 5385 5691 -549 6 1286 215 316 13 0 chr9 91945187 91945266 -32130906 - ID2 SINE ID 0 83 4 6 1286 6963 186 18 15 chr9 91946183 91947566 -32128606 - RMER12B LTR ERVK -17 1387 1 6 1286 31 0 0 0 chr9 91947652 91947683 -32128489 + AT_rich Low_complexity Low_complexity 1 31 0 6 1286 23 54 0 0 chr9 91947907 91947944 -32128228 + AT_rich Low_complexity Low_complexity 1 37 0 6 1286 189 0 0 0 chr9 91948002 91948023 -32128149 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 6 1286 969 308 23 9 chr9 91948123 91948467 -32127705 - Lx7 LINE L1 -393 7303 6955 6 1286 287 247 13 13 chr9 91948870 91948948 -32127224 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1286 1092 279 42 17 chr9 91948966 91949252 -32126920 - ORR1D1 LTR MaLR -4 370 80 6 1286 311 0 0 25 chr9 91949252 91949292 -32126880 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1286 1092 279 42 17 chr9 91949292 91949366 -32126806 - ORR1D1 LTR MaLR -295 79 2 6 1286 370 294 137 46 chr9 91949553 91949706 -32126466 + MTE2a LTR MaLR 213 379 0 6 1286 902 269 60 30 chr9 91949715 91950035 -32126137 - ORR1D1 LTR MaLR -14 364 5 6 1286 1448 221 52 9 chr9 91950037 91950361 -32125811 - ORR1D1-int LTR MaLR -1 1369 1032 6 1286 21 0 0 0 chr9 91950418 91950439 -32125733 + AT_rich Low_complexity Low_complexity 1 21 0 6 1286 3140 236 126 10 chr9 91950793 91951387 -32124785 - ORR1D1-int LTR MaLR -330 1040 394 6 1286 453 19 0 0 chr9 91951387 91951441 -32124731 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1286 3140 236 126 10 chr9 91951441 91951653 -32124519 - ORR1D1-int LTR MaLR -977 393 142 6 1286 774 276 205 4 chr9 91951711 91951969 -32124203 - ORR1D1 LTR MaLR -64 310 1 6 1286 793 343 94 36 chr9 91951978 91952562 -32123610 - Lx8 LINE L1 -384 7089 6472 6 1286 6434 107 31 6 chr9 91952570 91953525 -32122647 + Lx LINE L1 5669 6647 -7 6 1286 814 308 24 63 chr9 91953543 91953955 -32122217 - Lx8 LINE L1 -1014 6459 6064 6 1286 1466 218 48 56 chr9 91954007 91954385 -32121787 + ORR1C2 LTR MaLR 6 380 -4 6 1286 216 154 0 49 chr9 91954770 91954811 -32121361 + T-rich Low_complexity Low_complexity 5 43 0 6 1286 641 179 0 22 chr9 91954811 91954948 -32121224 - BC1_Mm scRNA scRNA -18 134 1 6 1286 1298 244 174 17 chr9 91955398 91955807 -32120365 - RMER19C LTR ERVK -1 610 138 6 1286 7462 59 26 3 chr9 91955895 91956852 -32119320 - L1_Mus1 LINE L1 0 6567 5589 6 1286 585 64 0 0 chr9 91956865 91956943 -32119229 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1286 735 301 73 47 chr9 91956988 91957522 -32118650 - L1MA5 LINE L1 -369 5931 5384 6 1286 665 250 28 0 chr9 91957535 91957679 -32118493 + B1_Mur3 SINE Alu 1 148 -1 6 1286 34 42 0 0 chr9 91957681 91957729 -32118443 + AT_rich Low_complexity Low_complexity 1 48 0 6 1286 251 345 84 25 chr9 91957839 91958113 -32118059 - L1MA5 LINE L1 -933 5210 4921 6 1286 488 323 8 15 chr9 91958222 91958355 -32117817 + B1F SINE Alu 10 141 -8 6 1286 228 234 0 0 chr9 91961071 91961118 -32115054 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 1286 270 0 0 0 chr9 91961154 91961184 -32114988 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1286 596 328 52 70 chr9 91961316 91961818 -32114354 - Lx8 LINE L1 -134 7339 6847 6 1286 477 0 0 0 chr9 91961818 91961871 -32114301 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1286 1471 283 140 38 chr9 91961885 91962752 -32113420 - L1_Mur3 LINE L1 -13 5867 4913 6 1286 532 244 0 12 chr9 91962804 91962970 -32113202 + (TA)n Simple_repeat Simple_repeat 2 165 0 6 1286 183 80 0 0 chr9 91963119 91963144 -32113028 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 6 1286 4438 106 41 21 chr9 91963730 91963784 -32112388 + Lx3B LINE L1 6281 6334 -639 6 1286 2801 91 5 5 chr9 91963784 91964180 -32111992 - MTA_Mm LTR MaLR 0 396 1 6 1286 4438 106 41 21 chr9 91964180 91964801 -32111371 + Lx3B LINE L1 6335 6970 -3 6 1286 35 83 0 0 chr9 91964802 91964886 -32111286 + AT_rich Low_complexity Low_complexity 1 84 0 6 1286 32390 73 2 1 chr9 91965533 91970729 -32105443 + L1Md_F2 LINE L1 384 5586 -297 6 1286 8066 41 2 1 chr9 91970729 91971712 -32104460 + L1Md_F2 LINE L1 5587 6570 -12 6 1286 1622 327 73 20 chr9 91971922 91972728 -32103444 - Lx8 LINE L1 0 7473 6625 6 1286 282 264 14 0 chr9 91972811 91972883 -32103289 - RLTR19C LTR ERVK -409 97 25 6 1286 306 346 66 57 chr9 91973092 91973319 -32102853 - MLT2B2 LTR ERVL -42 473 245 6 1286 200 100 0 24 chr9 91973322 91973363 -32102809 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1286 647 300 21 46 chr9 91973407 91973648 -32102524 - MLT2B2 LTR ERVL -280 235 1 6 1286 329 232 0 14 chr9 91974121 91974191 -32101981 + HAL1-3A_ME LINE L1 1949 2017 -841 6 1286 580 321 41 52 chr9 91974532 91974801 -32101371 - Lx9 LINE L1 -274 7370 7105 6 1286 733 293 26 49 chr9 91974870 91975175 -32100997 + L1_Rod LINE L1 5333 5630 -217 6 1286 650 323 138 40 chr9 91975175 91975886 -32100286 + MTE-int LTR MaLR 757 1537 -43 6 1286 735 33 0 0 chr9 91976026 91976116 -32100056 + (TTTTG)n Simple_repeat Simple_repeat 3 92 0 6 1286 1066 59 0 0 chr9 91976116 91976251 -32099921 - B1_Mm SINE Alu -11 136 2 6 1286 1081 205 53 43 chr9 91976255 91976524 -32099648 - Lx3B LINE L1 0 7000 6722 6 1286 3682 161 61 6 chr9 91977636 91978292 -32097880 + RLTR17 LTR ERVK 1 692 0 6 1286 8291 179 40 28 chr9 91978711 91980561 -32095611 - L1_Mur2 LINE L1 -2829 3048 1176 6 1286 276 100 0 0 chr9 91980562 91980602 -32095570 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 6 1286 227 219 78 0 chr9 91980644 91980708 -32095464 - L1M2 LINE L1 -3330 2813 2745 6 1286 34 65 0 0 chr9 91980807 91980869 -32095303 + AT_rich Low_complexity Low_complexity 1 62 0 6 1286 21 89 0 0 chr9 91980949 91981005 -32095167 + AT_rich Low_complexity Low_complexity 1 56 0 6 1286 208 0 62 0 chr9 91981045 91981077 -32095095 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1286 337 292 0 0 chr9 91981724 91981813 -32094359 + PB1D10 SINE Alu 27 115 -2 6 1286 5302 97 59 2 chr9 91981966 91983495 -32092677 - L1VL2 LINE L1 -1800 1815 195 6 1286 830 196 129 22 chr9 91983486 91983710 -32092462 - L1_Mur2 LINE L1 -5957 1129 882 6 1286 3293 197 30 91 chr9 91983943 91984687 -32091485 + ORR1B1-int LTR MaLR 219 916 -342 6 1286 604 175 0 0 chr9 91984670 91984773 -32091399 + ORR1B1-int LTR MaLR 1267 1369 -1 6 1286 1957 171 88 3 chr9 91984773 91985136 -32091036 + ORR1B1 LTR MaLR 1 394 0 6 1286 345 189 0 13 chr9 91985140 91985215 -32090957 - L1_Rod LINE L1 -1030 4817 4744 6 1286 250 91 0 200 chr9 91985217 91985272 -32090900 + RMER6C LTR ERVK 3 46 -674 6 1286 530 233 0 80 chr9 91985298 91985410 -32090762 + MT2B LTR ERVL 181 283 -318 6 1286 1845 166 14 27 chr9 91985466 91985837 -32090335 + RMER6C LTR ERVK 325 690 0 6 1286 497 249 21 6 chr9 91985882 91986061 -32090111 - L1_Rod LINE L1 -1343 4800 4563 6 1286 598 360 75 34 chr9 91986155 91986448 -32089724 - LTR16B LTR ERVL -157 306 2 6 1286 4008 28 0 0 chr9 91986543 91987015 -32089157 + L1Md_T LINE L1 5115 5586 -297 6 1286 8452 33 0 0 chr9 91987015 91988011 -32088161 + L1Md_T LINE L1 5587 6582 0 6 1286 243 215 68 86 chr9 91989224 91989307 -32086865 - L1M5 LINE L1 -1696 4450 4372 6 1286 577 321 10 5 chr9 91989307 91989504 -32086668 - B3A SINE B2 0 198 1 6 1286 243 215 68 86 chr9 91989504 91989537 -32086635 - L1M5 LINE L1 -1775 4371 4336 6 1286 1656 242 68 113 chr9 91989612 91989972 -32086200 + RMER6D LTR ERVK 1 353 -367 6 1286 228 86 0 0 chr9 91989972 91990007 -32086165 + (CAGGT)n Simple_repeat Simple_repeat 5 39 0 6 1286 1656 242 68 113 chr9 91990007 91990400 -32085772 + RMER6D LTR ERVK 354 720 0 6 1286 200 242 16 31 chr9 91990483 91990547 -32085625 + CT-rich Low_complexity Low_complexity 2 64 0 6 1286 24 0 0 0 chr9 91991182 91991206 -32084966 + AT_rich Low_complexity Low_complexity 1 24 0 6 1286 29 28 0 0 chr9 91991344 91991380 -32084792 + AT_rich Low_complexity Low_complexity 1 36 0 6 1286 481 187 12 112 chr9 91991381 91991550 -32084622 - Lx3B LINE L1 -2 6971 6820 6 1286 2112 142 39 8 chr9 91991535 91991898 -32084274 - Lx3B LINE L1 -502 6471 6098 6 1286 292 329 48 6 chr9 91992393 91992561 -32083611 + L1M3 LINE L1 3736 3910 -2230 6 1286 192 77 0 0 chr9 91992563 91992589 -32083583 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1286 17050 139 66 5 chr9 91992591 91997945 -32078227 + L1_Mus1 LINE L1 410 6566 -1 6 1286 378 42 0 0 chr9 91997948 91997996 -32078176 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 6 1286 9675 119 6 14 chr9 91997996 91999327 -32076845 + L1_Mm LINE L1 3973 5302 -581 6 1286 3351 92 18 0 chr9 91999327 91999784 -32076388 + L1_Mus1 LINE L1 6097 6561 -6 7 1286 9675 119 6 14 chr9 91999784 92000000 -32076172 + L1_Mm LINE L1 5303 5507 -376 6 1286 6691 84 90 1 chr9 92000000 92001025 -32075147 + L1_Mus3 LINE L1 5508 6626 -12 1 1286 308 330 14 89 chr9 92001072 92001285 -32074887 + L1M3 LINE L1 3993 4189 -1954 2 1286 385 270 130 25 chr9 92001385 92001624 -32074548 + L1M3 LINE L1 4921 5184 -956 2 1286 477 0 0 0 chr9 92001627 92001680 -32074492 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1286 792 290 15 5 chr9 92001712 92001913 -32074259 - B3 SINE B2 -13 203 1 4 1286 1440 98 6 17 chr9 92002081 92002309 -32073863 + L1Md_F2 LINE L1 5395 5586 -297 5 1286 8106 42 2 5 chr9 92002309 92003308 -32072864 + L1Md_F2 LINE L1 5587 6582 0 5 1286 221 276 17 0 chr9 92003438 92003496 -32072676 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 6 1286 21 0 0 0 chr9 92003842 92003863 -32072309 + AT_rich Low_complexity Low_complexity 1 21 0 7 1286 23 0 0 0 chr9 92004633 92004656 -32071516 + AT_rich Low_complexity Low_complexity 1 23 0 8 1286 1351 13 6 6 chr9 92006904 92007053 -32069119 + L1_Mm LINE L1 5438 5586 -297 9 1286 8942 6 0 0 chr9 92007053 92008049 -32068123 + L1Md_A LINE L1 5587 6582 0 1 1286 410 293 81 17 chr9 92008052 92008288 -32067884 + L1ME1 LINE L1 5913 6163 -16 1 1286 7491 81 30 1 chr9 92008519 92009672 -32066500 - L1_Mus3 LINE L1 -6 6632 5442 1 1286 5669 62 9 0 chr9 92009672 92010413 -32065759 - L1Md_F3 LINE L1 0 6584 5837 1 1286 3454 106 22 0 chr9 92010413 92010480 -32065692 - L1_Mus3 LINE L1 -442 5441 5375 1 1286 876 121 0 0 chr9 92010480 92010612 -32065560 + B2_Mm2 SINE B2 12 143 -52 1 1286 1811 216 23 67 chr9 92010782 92011259 -32064913 + RMER20A LTR ERVK 11 466 -50 1 1286 328 263 0 13 chr9 92011609 92011686 -32064486 + PB1D10 SINE Alu 7 82 -35 1 1286 27 0 0 0 chr9 92011833 92011860 -32064312 + AT_rich Low_complexity Low_complexity 1 27 0 1 1286 405 0 0 0 chr9 92011983 92012028 -32064144 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1286 339 85 41 31 chr9 92012141 92012238 -32063934 + (TTTG)n Simple_repeat Simple_repeat 4 101 0 1 160 33541 104 16 14 chr9 92012277 92018613 -32057559 - L1Md_F2 LINE L1 -12 6570 215 2 1287 708 279 10 24 chr9 92018710 92018919 -32057253 + B3 SINE B2 9 214 -2 2 1287 2308 144 30 3 chr9 92019866 92020234 -32055938 + ORR1C1 LTR MaLR 1 378 0 2 1287 25 90 0 0 chr9 92020367 92020434 -32055738 + AT_rich Low_complexity Low_complexity 1 67 0 2 1287 476 323 17 13 chr9 92020510 92020748 -32055424 - L1_Rod LINE L1 -77 5770 5532 2 1287 336 161 0 0 chr9 92020748 92020810 -32055362 + (TTG)n Simple_repeat Simple_repeat 1 62 0 2 1287 317 223 62 27 chr9 92020813 92020934 -32055238 - L1M4 LINE L1 -684 5613 5489 2 1287 516 16 0 0 chr9 92021512 92021573 -32054599 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1287 192 301 16 81 chr9 92021630 92021653 -32054519 - L2 LINE L2 -842 2577 2556 2 1287 303 28 0 0 chr9 92021653 92021689 -32054483 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2 1287 192 301 16 81 chr9 92021689 92021788 -32054384 - L2 LINE L2 -864 2555 2463 2 1287 408 336 96 4 chr9 92022020 92022292 -32053880 + L1ME3A LINE L1 5841 6137 -36 3 1287 293 326 83 34 chr9 92023140 92023464 -32052708 - L1MEg LINE L1 -4629 1455 1116 3 1287 318 175 18 0 chr9 92023707 92023764 -32052408 - Lx9 LINE L1 -824 6820 6763 3 1287 1096 80 154 0 chr9 92023790 92023952 -32052220 + B2_Mm2 SINE B2 1 187 -8 3 1287 297 0 0 0 chr9 92024017 92024050 -32052122 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1287 572 323 43 61 chr9 92024057 92024113 -32052059 - B4 SINE B4 -18 274 225 3 1287 246 105 0 0 chr9 92024113 92024151 -32052021 + (TTAG)n Simple_repeat Simple_repeat 2 39 0 3 1287 572 323 43 61 chr9 92024151 92024371 -32051801 - B4 SINE B4 -68 224 3 3 1287 358 286 101 32 chr9 92024431 92024619 -32051553 + B3 SINE B2 1 201 -15 3 1287 205 259 133 67 chr9 92025553 92025673 -32050499 + MIRc SINE MIR 122 249 -19 3 1287 1067 151 136 0 chr9 92025700 92025899 -32050273 - URR1A DNA MER1_type 0 226 1 3 1287 617 302 19 9 chr9 92026257 92026471 -32049701 - B3 SINE B2 0 216 1 4 1287 231 36 0 0 chr9 92026869 92026897 -32049275 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1287 30 0 0 0 chr9 92028183 92028213 -32047959 + AT_rich Low_complexity Low_complexity 1 30 0 4 1287 517 211 44 34 chr9 92028657 92028818 -32047354 - Lx4B LINE L1 -4 7054 6882 4 1287 1269 280 68 22 chr9 92029446 92029815 -32046357 + Lx8 LINE L1 6203 6588 -885 4 1287 1601 274 93 10 chr9 92029870 92030376 -32045796 + Lx8 LINE L1 6678 7225 -248 4 1287 339 44 0 0 chr9 92030489 92030534 -32045638 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1287 26 50 0 0 chr9 92030636 92030676 -32045496 + AT_rich Low_complexity Low_complexity 1 40 0 4 1287 329 361 8 8 chr9 92030682 92030802 -32045370 + Lx8 LINE L1 7214 7333 -140 4 1287 230 255 20 0 chr9 92030936 92030987 -32045185 + CT-rich Low_complexity Low_complexity 5 56 0 4 1287 380 328 22 7 chr9 92031025 92031160 -32045012 - RSINE1 SINE B4 -13 152 16 4 1287 651 348 37 0 chr9 92032745 92032932 -32043240 - ID_B1 SINE B4 -23 201 8 4 1287 22 56 0 0 chr9 92032938 92032974 -32043198 + AT_rich Low_complexity Low_complexity 1 36 0 5 1287 849 159 188 21 chr9 92035175 92035367 -32040805 - URR1B DNA MER1_type 0 225 2 5 1287 910 249 154 38 chr9 92037683 92038054 -32038118 - MTD LTR MaLR -2 417 4 5 1287 2747 98 14 16 chr9 92039135 92039558 -32036614 - Lx3A LINE L1 -7 6974 6553 5 1287 22 70 0 0 chr9 92039763 92039806 -32036366 + AT_rich Low_complexity Low_complexity 1 43 0 5 1287 291 304 106 113 chr9 92039930 92040223 -32035949 + B4A SINE B4 2 292 0 5 1287 338 239 0 7 chr9 92040223 92040351 -32035821 + (CA)n Simple_repeat Simple_repeat 1 127 0 5 1287 390 42 0 0 chr9 92040351 92040399 -32035773 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1287 338 239 0 7 chr9 92040399 92040413 -32035759 + (CA)n Simple_repeat Simple_repeat 2 15 0 5 1287 708 211 0 13 chr9 92040432 92040581 -32035591 + B1_Mus1 SINE Alu 2 148 0 5 1287 417 39 0 0 chr9 92040583 92040634 -32035538 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 6 1287 267 299 24 36 chr9 92041086 92041197 -32034975 + MER20B DNA MER1_type 54 163 -56 6 1287 1011 103 7 0 chr9 92041344 92041489 -32034683 + B1_Mm SINE Alu 2 147 0 6 1287 294 29 0 0 chr9 92042793 92042828 -32033344 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1287 299 228 120 0 chr9 92043195 92043287 -32032885 + Lx9 LINE L1 982 1084 -6524 6 1287 675 34 0 53 chr9 92043298 92043392 -32032780 + B1_Mm SINE Alu 59 147 0 6 1287 454 220 17 17 chr9 92043419 92043539 -32032633 + L1_Mus2 LINE L1 6447 6566 0 6 1287 1763 280 131 72 chr9 92043672 92044116 -32032056 + Lx9 LINE L1 1247 1711 -4136 6 1287 2247 35 7 14 chr9 92044116 92044402 -32031770 + L1Md_F3 LINE L1 6301 6584 0 6 1287 1763 280 131 72 chr9 92044402 92046160 -32030012 + Lx9 LINE L1 1712 3591 -2256 6 1287 180 0 0 0 chr9 92046160 92046180 -32029992 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1287 1763 280 131 72 chr9 92046180 92046237 -32029935 + Lx9 LINE L1 3592 3642 -2205 6 1287 1952 275 74 112 chr9 92046272 92047550 -32028622 + Lx9 LINE L1 4530 5758 -89 6 1287 1199 125 11 16 chr9 92047550 92047737 -32028435 + B2_Mm2 SINE B2 2 187 -8 6 1287 348 127 0 0 chr9 92047739 92047794 -32028378 + (GAA)n Simple_repeat Simple_repeat 2 56 0 7 1287 615 306 57 37 chr9 92047813 92048207 -32027965 + Lx9 LINE L1 5781 6188 -1508 6 1287 470 174 20 0 chr9 92048327 92048425 -32027747 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 7 1287 391 317 96 33 chr9 92048467 92048738 -32027434 + Lx9 LINE L1 7172 7459 -185 6 1287 324 0 0 0 chr9 92048748 92048784 -32027388 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1287 278 123 0 17 chr9 92049230 92049288 -32026884 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 7 1287 330 26 0 0 chr9 92049449 92049488 -32026684 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1287 287 317 92 0 chr9 92049522 92049664 -32026508 + RSINE1 SINE B4 3 157 -8 7 1287 754 218 7 7 chr9 92049817 92049965 -32026207 + B1_Mur4 SINE Alu 3 150 0 7 1287 204 40 0 0 chr9 92049978 92050003 -32026169 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1287 334 100 80 0 chr9 92050182 92050282 -32025890 + (TA)n Simple_repeat Simple_repeat 1 108 0 7 1287 23 33 0 0 chr9 92050282 92050312 -32025860 + AT_rich Low_complexity Low_complexity 1 30 0 7 1287 3520 264 178 9 chr9 92050780 92052035 -32024137 - Lx6 LINE L1 -11 7449 5983 8 1287 331 217 41 52 chr9 92052706 92052803 -32023369 + RMER15 LTR ERVL 2 97 -478 8 1287 283 282 203 28 chr9 92052840 92053022 -32023150 + RMER15 LTR ERVL 362 575 0 8 1287 357 316 62 40 chr9 92053075 92053302 -32022870 - L1MA4 LINE L1 -358 5942 5711 8 1287 447 63 0 0 chr9 92053335 92053398 -32022774 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1287 23 33 0 0 chr9 92053434 92053464 -32022708 + AT_rich Low_complexity Low_complexity 1 30 0 8 1287 1538 252 43 63 chr9 92054577 92055135 -32021037 - L1_Mur3 LINE L1 -888 4992 4446 8 1287 4039 156 54 18 chr9 92055149 92055912 -32020260 - Lx2B LINE L1 -1 6999 6210 8 1287 207 0 0 0 chr9 92057001 92057024 -32019148 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 1287 1549 216 44 6 chr9 92057027 92057367 -32018805 - Lx LINE L1 -13 6641 6289 8 1287 14883 85 12 10 chr9 92057369 92058634 -32017538 - L1VL4 LINE L1 -493 3066 1797 8 1287 713 142 0 72 chr9 92058634 92058786 -32017386 - L1Md_F2 LINE L1 0 6582 6442 9 1287 14883 85 12 10 chr9 92058786 92058923 -32017249 - L1VL4 LINE L1 -1763 1796 1661 8 1287 1177 104 44 6 chr9 92058923 92059106 -32017066 - B2_Mm1t SINE B2 -3 190 1 9 1287 14883 104 18 5 chr9 92059106 92060587 -32015585 - L1VL4 LINE L1 -1899 1660 156 8 1287 713 151 19 0 chr9 92060583 92060689 -32015483 - L1VL4 LINE L1 -5996 306 199 9 1287 5238 48 8 1 chr9 92060771 92061418 -32014754 - L1Md_F2 LINE L1 0 6582 5932 9 1287 2212 264 79 19 chr9 92061437 92062564 -32013608 + Lx7 LINE L1 5021 6306 -1390 9 1287 790 300 20 16 chr9 92062561 92062880 -32013292 + Lx7 LINE L1 6862 7181 -292 9 1287 396 0 0 0 chr9 92062934 92062978 -32013194 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1287 4477 142 12 3 chr9 92063457 92064217 -32011955 - L1_Mur2 LINE L1 -508 5369 4603 9 1287 23 0 0 0 chr9 92064541 92064564 -32011608 + AT_rich Low_complexity Low_complexity 1 23 0 9 1287 297 0 0 0 chr9 92064784 92064817 -32011355 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1287 1678 314 124 17 chr9 92065067 92066025 -32010147 + Cheshire DNA MER1_type 1336 2396 -24 9 1287 262 323 0 0 chr9 92066459 92066524 -32009648 - RSINE1 SINE B4 -99 66 2 1 1287 598 353 58 10 chr9 92067325 92067620 -32008552 + LFSINE_Vert SINE SINE 57 365 -94 1 1287 327 192 0 0 chr9 92068098 92068171 -32008001 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1287 240 174 57 19 chr9 92068240 92068398 -32007774 + (CA)n Simple_repeat Simple_repeat 1 164 0 1 1287 470 170 16 38 chr9 92068435 92068618 -32007554 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1287 256 207 20 41 chr9 92068583 92068729 -32007443 + (CATA)n Simple_repeat Simple_repeat 4 146 0 1 1287 261 0 0 0 chr9 92070155 92070184 -32005988 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1287 2624 62 48 24 chr9 92070361 92070739 -32005433 - L1Md_F2 LINE L1 0 6582 6196 1 1287 2420 84 17 3 chr9 92071625 92071971 -32004201 + Lx LINE L1 6304 6654 0 1 1287 251 287 37 9 chr9 92072249 92072358 -32003814 + (CATA)n Simple_repeat Simple_repeat 3 114 0 1 1287 27 29 0 0 chr9 92073177 92073211 -32002961 + AT_rich Low_complexity Low_complexity 1 34 0 1 1287 37 39 0 0 chr9 92073334 92073385 -32002787 + AT_rich Low_complexity Low_complexity 1 51 0 1 1287 737 227 209 0 chr9 92074877 92075049 -32001123 - B3 SINE B2 -6 210 3 1 1287 24 0 0 0 chr9 92075091 92075115 -32001057 + AT_rich Low_complexity Low_complexity 1 24 0 1 1287 1469 132 82 66 chr9 92075322 92075639 -32000533 + RLTRETN_Mm LTR ERVK 1 322 0 1 1287 184 404 103 8 chr9 92076093 92076355 -31999817 - L2 LINE L2 -1281 2138 1852 1 1287 297 373 108 40 chr9 92076589 92076885 -31999287 - L2 LINE L2 -1695 1724 1409 1 1287 301 100 20 0 chr9 92076907 92076957 -31999215 - ORR1D1 LTR MaLR -266 108 58 1 1287 977 325 74 26 chr9 92076961 92077422 -31998750 + Lx8 LINE L1 6982 7464 -9 1 1287 255 330 0 20 chr9 92077426 92077525 -31998647 - Charlie5 DNA MER1_type -2521 103 7 1 1287 525 319 21 5 chr9 92077553 92077739 -31998433 - Lx8 LINE L1 -754 6719 6531 1 1287 1979 260 51 46 chr9 92078087 92078712 -31997460 + Lx7 LINE L1 6789 7416 -280 1 1287 504 0 0 0 chr9 92078712 92078768 -31997404 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1287 230 227 80 0 chr9 92078790 92078865 -31997307 + Lx7 LINE L1 7610 7690 -6 1 1287 1101 71 0 0 chr9 92078883 92079024 -31997148 + B1_Mus2 SINE Alu 2 142 -5 1 1287 954 230 35 42 chr9 92079459 92079772 -31996400 + L1_Mur3 LINE L1 4460 4770 -1110 1 1287 468 0 0 0 chr9 92080597 92080649 -31995523 + (TAAAA)n Simple_repeat Simple_repeat 5 56 0 1 1287 1105 289 60 13 chr9 92080787 92081141 -31995031 - MTD LTR MaLR 0 419 2 1 1287 22 56 0 0 chr9 92081298 92081334 -31994838 + AT_rich Low_complexity Low_complexity 1 36 0 1 1287 227 296 0 108 chr9 92081520 92081649 -31994523 + MT-int LTR MaLR 618 732 -366 1 1287 206 119 48 0 chr9 92083490 92083532 -31992640 + (TATG)n Simple_repeat Simple_repeat 3 46 0 1 1287 2852 157 79 7 chr9 92083945 92084491 -31991681 - RMER4B LTR ERVK 0 585 1 1 1287 253 283 0 0 chr9 92084806 92084859 -31991313 + RSINE1 SINE B4 3 55 -110 1 1287 234 150 0 0 chr9 92086088 92086128 -31990044 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 1 1287 230 128 0 41 chr9 92087006 92087055 -31989117 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1287 4001 49 4 12 chr9 92087136 92087649 -31988523 + L1Md_F2 LINE L1 6073 6581 -1 1 1287 252 0 0 0 chr9 92088239 92088267 -31987905 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1287 210 71 0 0 chr9 92088274 92088302 -31987870 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1287 270 291 46 55 chr9 92090166 92090275 -31985897 - L1ME3 LINE L1 -61 6101 5994 1 1287 378 191 0 0 chr9 92090427 92090474 -31985698 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1287 594 63 0 0 chr9 92090474 92090553 -31985619 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1287 378 191 0 0 chr9 92090553 92090594 -31985578 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1287 2804 167 21 8 chr9 92090632 92091152 -31985020 - Lx3C LINE L1 -2 6974 6448 1 1287 338 321 65 29 chr9 92092668 92092838 -31983334 + MER5A DNA MER1_type 1 176 -13 1 1287 261 196 0 0 chr9 92093191 92093247 -31982925 + GA-rich Low_complexity Low_complexity 2 57 0 1 1287 216 0 0 0 chr9 92093905 92093929 -31982243 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1287 4097 209 10 104 chr9 92095038 92095381 -31980791 - Lx7 LINE L1 -4 7692 7374 1 1287 243 0 0 0 chr9 92095381 92095408 -31980764 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1287 4097 209 10 104 chr9 92095408 92096099 -31980073 - Lx7 LINE L1 -323 7373 6756 1 1287 351 0 0 0 chr9 92096099 92096138 -31980034 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1287 4097 209 10 104 chr9 92096138 92096217 -31979955 - Lx7 LINE L1 -941 6755 6683 1 1287 801 50 0 0 chr9 92096501 92096602 -31979570 + B1_Mus2 SINE Alu 43 143 -4 1 1287 219 36 0 0 chr9 92096623 92096651 -31979521 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1287 236 311 74 68 chr9 92097045 92097207 -31978965 + RSINE1 SINE B4 3 165 0 1 1287 755 190 6 24 chr9 92097568 92097735 -31978437 + Lx2 LINE L1 6820 6983 -14 1 1287 23 0 0 0 chr9 92098370 92098393 -31977779 + AT_rich Low_complexity Low_complexity 1 23 0 1 1287 351 0 0 0 chr9 92099842 92099881 -31976291 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1287 882 106 0 0 chr9 92099881 92100012 -31976160 + (TA)n Simple_repeat Simple_repeat 2 133 0 1 1287 29 47 0 0 chr9 92100709 92100752 -31975420 + AT_rich Low_complexity Low_complexity 1 43 0 1 1287 216 0 0 0 chr9 92100886 92100910 -31975262 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 1 1287 1141 98 22 28 chr9 92101587 92101766 -31974406 + B2_Mm1t SINE B2 2 179 -14 1 1287 418 118 316 60 chr9 92101817 92101934 -31974238 + B2_Mm2 SINE B2 47 193 -2 1 1287 34 65 0 0 chr9 92102093 92102155 -31974017 + AT_rich Low_complexity Low_complexity 1 62 0 1 1287 22 0 0 0 chr9 92103204 92103226 -31972946 + AT_rich Low_complexity Low_complexity 1 22 0 1 1287 319 186 21 0 chr9 92103391 92103488 -31972684 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1287 425 251 25 21 chr9 92105570 92105709 -31970463 - ORR1D2 LTR MaLR -244 130 2 1 1287 212 322 68 11 chr9 92106111 92106199 -31969973 - L2 LINE L2 -369 3050 2958 1 1287 792 255 62 39 chr9 92106740 92106948 -31969224 - B3 SINE B2 -2 214 2 1 1287 239 278 0 0 chr9 92107048 92107138 -31969034 + T-rich Low_complexity Low_complexity 1 90 0 1 1287 761 298 8 96 chr9 92107151 92107411 -31968761 - B4 SINE B4 -21 271 35 1 1287 26 82 0 0 chr9 92107430 92107491 -31968681 + AT_rich Low_complexity Low_complexity 1 61 0 1 1287 474 358 70 20 chr9 92107640 92107985 -31968187 - Lx8 LINE L1 -184 7289 6928 1 1287 901 270 166 3 chr9 92107982 92108301 -31967871 - Lx8 LINE L1 -680 6793 6423 1 1287 2842 285 82 46 chr9 92108282 92110170 -31966002 - L1_Rod LINE L1 -2935 2912 958 1 1287 329 0 0 24 chr9 92110179 92110221 -31965951 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1287 504 86 0 0 chr9 92110313 92110383 -31965789 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1 1287 414 338 7 29 chr9 92112795 92112932 -31963240 + B1F1 SINE Alu 1 134 -15 1 1287 903 92 19 38 chr9 92112933 92113092 -31963080 + L1_Mus3 LINE L1 6479 6634 -4 1 1287 1761 224 69 0 chr9 92113093 92113512 -31962660 + Lx5 LINE L1 6600 7047 -3 1 1287 501 263 43 28 chr9 92114505 92114646 -31961526 + B1_Mus1 SINE Alu 6 148 0 1 1287 968 92 43 0 chr9 92115679 92115820 -31960352 + B1_Mus1 SINE Alu 2 148 0 1 1287 278 297 0 0 chr9 92115880 92115911 -31960261 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1287 186 103 0 0 chr9 92115911 92115940 -31960232 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1287 278 297 0 0 chr9 92115940 92115946 -31960226 + (TA)n Simple_repeat Simple_repeat 2 7 0 1 1287 188 100 25 0 chr9 92115946 92115986 -31960186 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1287 278 297 0 0 chr9 92115986 92116038 -31960134 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1287 678 181 7 68 chr9 92116038 92116162 -31960010 + MT2A LTR ERVL 1 115 -418 1 1287 657 170 18 18 chr9 92116162 92116276 -31959896 + B1_Mur4 SINE Alu 1 114 -36 1 1287 393 39 0 0 chr9 92116283 92116334 -31959838 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1287 2390 113 73 8 chr9 92116353 92116736 -31959436 - RLTR19B LTR ERVK 0 715 308 1 1287 3079 270 55 23 chr9 92116738 92117808 -31958364 - Lx9 LINE L1 -182 7462 6359 1 1287 188 94 56 19 chr9 92117815 92117869 -31958303 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1287 206 83 56 0 chr9 92117996 92118032 -31958140 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1 1287 798 175 6 11 chr9 92118033 92118212 -31957960 + GA-rich Low_complexity Low_complexity 3 180 0 1 1287 943 165 4 16 chr9 92118233 92118489 -31957683 + GA-rich Low_complexity Low_complexity 1 252 0 1 1287 1271 74 0 6 chr9 92118529 92118706 -31957466 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 1 1287 641 76 11 0 chr9 92118715 92118807 -31957365 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 1 1287 372 288 21 68 chr9 92118884 92119074 -31957098 - B3A SINE B2 -16 182 2 1 1287 1040 244 57 19 chr9 92122566 92122829 -31953343 + B4A SINE B4 4 276 -16 1 1287 290 87 22 0 chr9 92122833 92122879 -31953293 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1287 198 82 0 75 chr9 92123537 92123590 -31952582 + T-rich Low_complexity Low_complexity 2 50 0 1 1287 324 0 0 0 chr9 92123776 92123812 -31952360 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 1287 183 311 167 19 chr9 92123949 92124057 -31952115 + L3 LINE CR1 4003 4126 -363 1 1287 1160 48 7 7 chr9 92124466 92124613 -31951559 + B1_Mus2 SINE Alu 1 147 0 1 1287 408 130 0 124 chr9 92125049 92125251 -31950921 + (CTGGGG)n Simple_repeat Simple_repeat 2 178 0 1 1287 805 165 212 17 chr9 92125544 92125723 -31950449 + B3 SINE B2 3 216 0 1 1287 1799 164 82 51 chr9 92125824 92126236 -31949936 + MTB_Mm-int LTR MaLR 832 1256 -2 1 1287 2329 170 10 20 chr9 92126238 92126641 -31949531 + MTB_Mm LTR MaLR 1 399 -8 1 1287 199 54 26 26 chr9 92126745 92126783 -31949389 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 1287 866 47 0 0 chr9 92126801 92126907 -31949265 - B1_Mm SINE Alu -5 142 37 2 1287 1085 309 34 22 chr9 92126907 92126930 -31949242 - Lx8 LINE L1 -101 7372 7354 2 1287 180 0 0 0 chr9 92126930 92126950 -31949222 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1287 1085 309 34 22 chr9 92126950 92127340 -31948832 - Lx8 LINE L1 -120 7353 6954 2 1287 1062 294 56 21 chr9 92127397 92127487 -31948685 - Lx8 LINE L1 -513 6960 6870 2 1287 2331 105 9 0 chr9 92127487 92127810 -31948362 + ORR1A2 LTR MaLR 2 327 0 2 1287 1062 294 56 21 chr9 92127810 92128147 -31948025 - Lx8 LINE L1 -604 6869 6518 2 1287 626 320 16 32 chr9 92128436 92128609 -31947563 + B3A SINE B2 11 183 -15 2 1287 540 68 0 0 chr9 92128609 92128682 -31947490 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1287 626 320 16 32 chr9 92128682 92128695 -31947477 + B3A SINE B2 184 194 -4 2 1287 1491 232 18 66 chr9 92129259 92129712 -31946460 + RMER1C Other Other 900 1319 -23 2 1287 465 151 0 0 chr9 92130280 92130366 -31945806 + GA-rich Low_complexity Low_complexity 4 89 0 2 1287 1075 108 23 0 chr9 92130382 92130558 -31945614 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1287 367 282 153 35 chr9 92130578 92130832 -31945340 + RMER5 LTR ERV1 112 395 -139 2 1287 384 0 21 95 chr9 92131028 92131123 -31945049 + (TTTTTG)n Simple_repeat Simple_repeat 3 90 0 2 1287 1035 58 0 28 chr9 92131125 92131266 -31944906 - B1_Mm SINE Alu 0 147 11 2 1287 263 161 54 0 chr9 92131281 92131337 -31944835 + RMER5 LTR ERV1 476 534 0 2 1287 315 49 0 0 chr9 92133280 92133321 -31942851 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1287 359 348 76 86 chr9 92133323 92133615 -31942557 + MLT2B1 LTR ERVL 220 512 -8 2 1287 258 32 0 0 chr9 92133615 92133646 -31942526 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1287 390 21 0 0 chr9 92133646 92133692 -31942480 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 1287 532 273 8 16 chr9 92133764 92133887 -31942285 + B3A SINE B2 2 123 -75 2 1287 215 266 0 0 chr9 92133911 92133975 -31942197 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 2 1287 243 0 0 0 chr9 92134320 92134347 -31941825 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1287 1955 126 39 156 chr9 92134633 92135171 -31941001 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1287 424 124 16 139 chr9 92135198 92135320 -31940852 + MMERVK10C-int LTR ERVK 17 123 -6358 2 1287 229 267 0 0 chr9 92135320 92135365 -31940807 + RLTR27 LTR ERVK 231 275 -34 2 1287 733 108 27 0 chr9 92135365 92135476 -31940696 + MMERVK10C-int LTR ERVK 145 258 -7323 2 1287 244 244 0 0 chr9 92135481 92135526 -31940646 + RLTR27 LTR ERVK 231 275 -34 2 1287 236 327 0 0 chr9 92135552 92135607 -31940565 + RLTR27 LTR ERVK 221 275 -34 2 1287 3757 49 2 18 chr9 92135607 92136110 -31940062 + IAPEz-int LTR ERVK 168 662 -5819 2 1287 2106 72 0 0 chr9 92136110 92136388 -31939784 + IAPEz-int LTR ERVK 1359 1636 -4845 2 1287 5759 48 4 9 chr9 92136387 92137137 -31939035 + IAPEz-int LTR ERVK 5736 6481 0 2 1287 2045 121 35 156 chr9 92137137 92137677 -31938495 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1287 1008 227 49 30 chr9 92138369 92138633 -31937539 - Lx5 LINE L1 -17 7033 6765 2 1287 231 36 0 0 chr9 92138634 92138662 -31937510 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1287 27 0 0 0 chr9 92138867 92138894 -31937278 + AT_rich Low_complexity Low_complexity 1 27 0 2 1287 2991 112 101 29 chr9 92139036 92139580 -31936592 - RLTR1D LTR ERV1 -4 620 1 2 1287 1000 47 70 0 chr9 92139817 92139946 -31936226 + B1_Mm SINE Alu 1 138 -9 2 1287 252 0 0 0 chr9 92139955 92139983 -31936189 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1287 4084 148 40 7 chr9 92140605 92141334 -31934838 - RMER6A LTR ERVK -2 754 2 2 1287 1271 92 27 0 chr9 92141413 92141597 -31934575 - B2_Mm2 SINE B2 -6 189 1 2 1287 2684 179 27 13 chr9 92141670 92142223 -31933949 - RLTR31_Mm LTR ERVK 0 561 1 2 1287 971 86 58 0 chr9 92142262 92142401 -31933771 + B1_Mus1 SINE Alu 2 148 0 2 1287 1782 178 11 19 chr9 92142415 92142793 -31933379 - RMER3D-int LTR ERVK -21 2821 2447 2 1287 247 403 53 41 chr9 92143162 92143408 -31932764 + MLT1J1 LTR MaLR 29 277 -167 2 1287 285 89 0 0 chr9 92143440 92143485 -31932687 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1288 228 296 226 0 chr9 92144458 92144573 -31931599 + MER5A DNA MER1_type 49 189 0 2 1288 458 232 0 29 chr9 92145892 92145994 -31930178 + B1_Mus1 SINE Alu 29 127 -21 2 1288 249 33 0 0 chr9 92146416 92146446 -31929726 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1288 203 156 0 0 chr9 92147411 92147443 -31928729 + A-rich Low_complexity Low_complexity 4 35 0 2 1288 2757 72 45 23 chr9 92148388 92148785 -31927387 - Lx3_Mus LINE L1 0 7009 6604 2 1288 493 328 22 29 chr9 92148942 92149218 -31926954 + B4A SINE B4 2 275 -17 2 1288 273 376 17 8 chr9 92150311 92150429 -31925743 + B4A SINE B4 157 275 -17 2 1288 256 333 15 15 chr9 92150438 92150569 -31925603 + (TATG)n Simple_repeat Simple_repeat 2 132 0 2 1288 561 255 40 93 chr9 92150885 92151052 -31925120 + B3 SINE B2 1 153 -63 2 1288 216 0 0 0 chr9 92151052 92151076 -31925096 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1288 630 39 0 0 chr9 92151076 92151152 -31925020 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1288 561 255 40 93 chr9 92151152 92151208 -31924964 + B3 SINE B2 154 212 -4 2 1288 363 245 0 0 chr9 92151426 92151520 -31924652 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 1288 1452 63 21 0 chr9 92154362 92154552 -31921620 - B2_Mm2 SINE B2 -1 194 1 2 1288 664 152 35 21 chr9 92154576 92154743 -31921429 - B3 SINE B2 -9 186 15 2 1288 257 288 14 0 chr9 92155164 92155237 -31920935 + ID4 SINE ID 9 82 -1 2 1288 1240 48 0 0 chr9 92156522 92156669 -31919503 + B1_Mus1 SINE Alu 2 148 0 2 1288 714 215 112 5 chr9 92156680 92156836 -31919336 + B3 SINE B2 1 174 -42 2 1288 198 71 0 0 chr9 92156836 92156864 -31919308 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1288 714 215 112 5 chr9 92156864 92156894 -31919278 + B3 SINE B2 175 207 -9 2 1288 738 217 127 11 chr9 92156899 92157097 -31919075 + RLTR20B3 LTR ERVK 268 535 -42 2 1288 1132 75 0 0 chr9 92158306 92158452 -31917720 - B1_Mus1 SINE Alu 0 148 3 2 1288 360 82 0 0 chr9 92159835 92159884 -31916288 - URR1B DNA MER1_type 0 225 177 2 1288 379 272 213 21 chr9 92161954 92162142 -31914030 + B4A SINE B4 3 226 -66 2 1288 455 332 95 5 chr9 92162569 92162844 -31913328 + Tigger7 DNA MER2_type 5 307 -2184 2 1288 428 308 93 19 chr9 92162850 92163161 -31913011 + Tigger7 DNA MER2_type 2137 2470 -21 2 1288 1218 135 16 0 chr9 92164329 92164514 -31911658 - B2_Mm2 SINE B2 -7 188 1 2 1288 2631 134 170 37 chr9 92165378 92165943 -31910229 - RMER19A LTR ERVK 0 737 11 2 1288 225 0 0 0 chr9 92166331 92166356 -31909816 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1288 22 56 0 0 chr9 92166770 92166806 -31909366 + AT_rich Low_complexity Low_complexity 1 36 0 2 1288 209 200 40 0 chr9 92167001 92167051 -31909121 + (TATAA)n Simple_repeat Simple_repeat 1 52 0 2 1288 194 128 0 25 chr9 92168122 92168162 -31908010 + A-rich Low_complexity Low_complexity 2 40 0 2 1288 665 57 29 0 chr9 92168633 92168738 -31907434 + L1_Mus3 LINE L1 6530 6637 -1 2 1288 209 189 0 63 chr9 92169641 92169720 -31906452 + A-rich Low_complexity Low_complexity 2 75 0 2 1288 820 224 103 18 chr9 92169720 92169943 -31906229 - RMER10A LTR ERVL -197 245 4 2 1288 216 0 0 0 chr9 92170407 92170431 -31905741 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 2 1288 217 87 87 0 chr9 92172443 92172489 -31903683 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2 1288 34 24 0 0 chr9 92173305 92173346 -31902826 + AT_rich Low_complexity Low_complexity 1 41 0 2 1288 557 225 16 0 chr9 92173984 92174113 -31902059 - B1_Mus1 SINE Alu 0 148 18 2 1288 21 36 0 0 chr9 92174338 92174366 -31901806 + AT_rich Low_complexity Low_complexity 1 28 0 2 1288 396 0 0 0 chr9 92174877 92174921 -31901251 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1288 794 213 201 0 chr9 92175481 92175655 -31900517 - B3 SINE B2 -7 209 1 2 1288 492 296 78 31 chr9 92176019 92176211 -31899961 - B3A SINE B2 -4 212 12 2 1288 746 186 15 8 chr9 92176261 92176391 -31899781 + B3A SINE B2 3 133 -65 2 1288 270 176 147 0 chr9 92176487 92176555 -31899617 + Lx8 LINE L1 7391 7468 -5 2 1288 189 0 0 0 chr9 92176876 92176897 -31899275 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 2 1288 207 0 0 0 chr9 92177577 92177600 -31898572 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1288 431 312 43 73 chr9 92178464 92178696 -31897476 + MER2 DNA MER2_type 27 251 -94 2 1288 436 304 124 8 chr9 92179422 92179735 -31896437 + L1M1 LINE L1 5405 5764 -548 2 1288 573 165 0 0 chr9 92179743 92179864 -31896308 + (CA)n Simple_repeat Simple_repeat 2 122 0 2 1288 597 287 20 34 chr9 92179954 92180102 -31896070 + B1_Mur1 SINE Alu 3 148 -1 2 1288 441 84 0 0 chr9 92180116 92180187 -31895985 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1288 203 32 65 0 chr9 92181077 92181108 -31895064 + (TTTTTG)n Simple_repeat Simple_repeat 5 37 0 2 1288 279 0 0 0 chr9 92181123 92181154 -31895018 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1288 862 169 197 0 chr9 92181303 92181481 -31894691 + B3 SINE B2 4 216 0 2 1288 307 277 67 0 chr9 92181922 92182041 -31894131 - L1MA4 LINE L1 -392 5908 5782 2 1288 372 295 0 0 chr9 92182112 92182217 -31893955 - L1MA4 LINE L1 -510 5793 5689 2 1288 218 327 43 34 chr9 92182920 92183037 -31893135 - MIRc SINE MIR -74 194 77 2 1288 285 315 131 57 chr9 92183328 92183503 -31892669 + Lx8 LINE L1 6921 7108 -365 2 1288 534 299 19 0 chr9 92183579 92183733 -31892439 + Lx8 LINE L1 7202 7358 -115 2 1288 903 245 10 5 chr9 92183984 92184193 -31891979 + B3 SINE B2 1 210 -6 2 1288 1239 85 0 0 chr9 92184198 92184362 -31891810 - B2_Mm2 SINE B2 -31 164 1 2 1288 219 227 0 0 chr9 92184913 92184979 -31891193 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2 1288 223 261 0 0 chr9 92184994 92185059 -31891113 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1288 592 325 60 90 chr9 92186280 92186480 -31889692 + B4A SINE B4 34 242 -50 2 1288 1149 62 7 0 chr9 92186480 92186626 -31889546 + B1_Mus1 SINE Alu 2 148 0 2 1288 592 325 60 90 chr9 92186626 92186692 -31889480 + B4A SINE B4 243 292 0 2 1288 201 191 24 0 chr9 92186741 92186783 -31889389 + GA-rich Low_complexity Low_complexity 1 43 0 2 1288 691 362 101 10 chr9 92186992 92187619 -31888553 + MER44D DNA MER2_type 9 692 -13 2 1288 368 97 0 14 chr9 92188031 92188104 -31888068 + L1_Mus1 LINE L1 6450 6521 -46 2 1288 365 304 95 9 chr9 92188706 92188822 -31887350 + RSINE1 SINE B4 16 141 -24 3 1288 273 29 0 0 chr9 92188835 92188869 -31887303 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1288 295 242 35 132 chr9 92192778 92192892 -31883280 - MTE2b LTR MaLR -276 103 1 3 1288 718 276 64 15 chr9 92192950 92193152 -31883020 + MTE2a-int LTR MaLR 10 221 -1359 3 1288 1241 89 30 0 chr9 92193163 92193332 -31882840 + Lx LINE L1 6326 6499 -155 3 1288 1768 319 108 11 chr9 92193332 92194045 -31882127 + MTE2a-int LTR MaLR 799 1580 0 3 1288 711 284 38 42 chr9 92194050 92194263 -31881909 + MTE2a LTR MaLR 6 217 -162 3 1288 654 305 63 70 chr9 92194690 92195021 -31881151 - MLT1A0 LTR MaLR -18 347 19 3 1288 606 365 101 68 chr9 92195057 92195948 -31880224 - MLT-int LTR MaLR -34 1701 734 3 1288 456 313 185 13 chr9 92195958 92196338 -31879834 - MLT1A0-int LTR MaLR -820 551 114 3 1288 254 283 35 86 chr9 92196396 92196512 -31879660 + MTE2a LTR MaLR 18 127 -292 3 1288 187 31 30 30 chr9 92196666 92196699 -31879473 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1288 542 260 49 117 chr9 92196715 92196920 -31879252 + MTE2a LTR MaLR 123 313 -66 3 1288 180 77 0 0 chr9 92197267 92197293 -31878879 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 3 1288 327 78 0 0 chr9 92197298 92197349 -31878823 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1288 1571 222 57 8 chr9 92197359 92197848 -31878324 - Lx9 LINE L1 -7 7637 7050 3 1288 267 79 0 0 chr9 92199618 92199656 -31876516 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1288 415 232 58 148 chr9 92200499 92200777 -31875395 - RMER2 LTR ERV1 -27 540 288 3 1288 412 236 18 18 chr9 92200834 92200946 -31875226 - RMER2 LTR ERV1 -451 116 5 3 1288 576 252 0 260 chr9 92201743 92201936 -31874236 + ORR1D1 LTR MaLR 1 147 -227 3 1288 360 0 0 0 chr9 92201936 92201976 -31874196 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1288 576 252 0 260 chr9 92201976 92202082 -31874090 + ORR1D1 LTR MaLR 148 222 -152 3 1288 681 91 0 9 chr9 92203095 92203206 -31872966 + L1_Mus4 LINE L1 6511 6620 -16 3 1288 195 42 0 0 chr9 92203206 92203230 -31872942 + (TAA)n Simple_repeat Simple_repeat 1 24 0 3 1288 493 280 31 62 chr9 92203491 92203793 -31872379 + Lx8 LINE L1 6981 7277 -196 3 1288 201 74 0 0 chr9 92203847 92203874 -31872298 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 3 1288 359 275 55 83 chr9 92205985 92206107 -31870065 + L1M2 LINE L1 2845 3008 -3135 3 1288 1364 202 94 26 chr9 92206107 92206457 -31869715 + ORR1D1 LTR MaLR 1 374 0 3 1288 359 272 54 83 chr9 92206457 92206673 -31869499 + L1M2 LINE L1 3009 3223 -2920 3 1288 764 230 89 0 chr9 92206673 92206864 -31869308 + B3 SINE B2 1 208 -8 3 1288 359 284 57 83 chr9 92206864 92207023 -31869149 + L1M2 LINE L1 3182 3333 -2547 3 1288 2428 277 22 37 chr9 92207077 92207801 -31868371 + Lx9 LINE L1 6397 7109 -535 3 1288 368 297 23 33 chr9 92207827 92208000 -31868172 + L1M2 LINE L1 3488 3666 -2480 3 1288 318 311 80 13 chr9 92208052 92208202 -31867970 - Lx9 LINE L1 -1179 6465 6306 3 1288 1528 285 29 48 chr9 92208279 92209041 -31867131 - Lx9 LINE L1 -1637 6059 5301 3 1288 185 139 23 0 chr9 92209071 92209114 -31867058 + (TTA)n Simple_repeat Simple_repeat 3 46 0 3 1288 1091 254 42 55 chr9 92209124 92209582 -31866590 - Lx9 LINE L1 -781 5066 4615 3 1288 547 130 20 0 chr9 92209590 92209690 -31866482 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 1288 462 252 149 37 chr9 92209693 92209961 -31866211 - Lx9 LINE L1 -1212 4635 4338 3 1288 4369 124 5 6 chr9 92210773 92211429 -31864743 - Lx2 LINE L1 -1 6996 6342 3 1288 7469 256 38 73 chr9 92211832 92213073 -31863099 - Lx9 LINE L1 -1503 4344 3205 3 1288 5609 31 3 0 chr9 92213073 92213746 -31862426 - L1Md_T LINE L1 0 6582 5908 3 1288 7469 256 38 73 chr9 92213746 92214924 -31861248 - Lx9 LINE L1 -2643 3204 2034 3 1288 739 202 5 101 chr9 92214924 92215133 -31861039 - B2_Mm2 SINE B2 -2 193 5 3 1288 7469 252 40 66 chr9 92215133 92216005 -31860167 - Lx9 LINE L1 -3814 2033 1165 3 1288 886 238 95 29 chr9 92216018 92216030 -31860142 - MTD LTR MaLR -127 292 282 3 1288 3524 20 0 0 chr9 92216030 92216426 -31859746 + MTA_Mm LTR MaLR 1 396 0 3 1288 886 238 95 29 chr9 92216426 92216686 -31859486 - MTD LTR MaLR -138 281 2 3 1288 23 54 0 0 chr9 92218085 92218122 -31858050 + AT_rich Low_complexity Low_complexity 1 37 0 3 1288 258 32 0 0 chr9 92218947 92218978 -31857194 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 3 1288 348 192 0 13 chr9 92219197 92219276 -31856896 - RMER17A2 LTR ERVK -61 845 768 3 1288 661 135 17 43 chr9 92219276 92219392 -31856780 - Lx2B LINE L1 -198 6802 6690 3 1288 447 116 58 0 chr9 92219391 92219460 -31856712 + Lx2 LINE L1 6455 6527 -470 3 1288 432 229 84 8 chr9 92219464 92219583 -31856589 - RLTR33 LTR ERVK -403 275 148 3 1288 396 246 118 0 chr9 92219795 92219905 -31856267 + ORR1D2 LTR MaLR 1 123 -247 3 1288 693 228 106 0 chr9 92219905 92220085 -31856087 - MMETn-int LTR ERVK -4712 2694 2496 3 1288 1732 171 85 57 chr9 92220105 92220565 -31855607 - MMETn-int LTR ERVK -3712 1132 732 3 1288 275 125 0 0 chr9 92220550 92220598 -31855574 - MMETn-int LTR ERVK -5218 188 141 3 1288 383 119 0 17 chr9 92221030 92221090 -31855082 - RLTR45-int LTR ERVK -5095 2149 2091 3 1288 341 222 43 105 chr9 92221085 92221289 -31854883 - MMETn-int LTR ERVK -2942 372 108 3 1288 315 234 10 60 chr9 92221324 92221424 -31854748 - MMETn-int LTR ERVK -4740 104 10 3 1288 1260 155 164 44 chr9 92221433 92221798 -31854374 - RLTR9E LTR ERVK 0 409 1 3 1288 211 170 43 0 chr9 92221848 92221895 -31854277 + GA-rich Low_complexity Low_complexity 3 51 0 3 1288 1291 298 107 28 chr9 92222160 92223629 -31852543 + L1M2 LINE L1 2361 3949 -2896 3 1288 286 264 11 22 chr9 92223645 92223734 -31852438 + Lx7 LINE L1 7138 7225 -471 3 1288 410 265 22 32 chr9 92223932 92224097 -31852075 + L1M2 LINE L1 6133 6298 -704 3 1288 276 111 0 0 chr9 92224408 92224453 -31851719 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1288 1703 234 158 38 chr9 92225451 92225956 -31850216 - RMER2 LTR ERV1 0 567 2 3 1288 561 336 7 0 chr9 92226017 92226160 -31850012 - B3A SINE B2 -17 181 38 3 1288 2478 145 5 8 chr9 92226160 92226555 -31849617 - ORR1B1 LTR MaLR 0 394 1 3 1288 335 252 36 29 chr9 92226773 92226912 -31849260 + L1MD2 LINE L1 24 163 -6384 3 1288 1415 198 46 29 chr9 92227495 92227802 -31848370 - ORR1B2 LTR MaLR 0 367 56 3 1288 390 265 48 122 chr9 92227796 92227829 -31848343 + ORR1E LTR MaLR 162 190 -169 3 1288 1006 95 6 6 chr9 92227829 92228009 -31848163 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1288 390 265 48 122 chr9 92228009 92228164 -31848008 + ORR1E LTR MaLR 191 336 -23 3 1288 525 16 0 0 chr9 92228656 92228718 -31847454 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1288 22 0 0 0 chr9 92230017 92230039 -31846133 + AT_rich Low_complexity Low_complexity 1 22 0 3 1288 239 72 0 23 chr9 92230078 92230121 -31846051 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1288 437 323 12 31 chr9 92230294 92230457 -31845715 + RSINE1 SINE B4 4 163 -2 3 1288 201 314 0 0 chr9 92230464 92230515 -31845657 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1288 1869 273 68 36 chr9 92230829 92231594 -31844578 + ORR1E-int LTR MaLR 1 632 -626 3 1288 344 187 231 0 chr9 92231599 92231690 -31844482 + MTD-int LTR MaLR 1147 1258 0 3 1288 596 325 110 21 chr9 92231692 92232075 -31844097 + MTD LTR MaLR 3 419 0 3 1288 340 237 106 31 chr9 92232098 92232259 -31843913 - ERVL-B4-int LTR ERVL -129 5585 5413 3 1288 279 0 0 0 chr9 92232721 92232752 -31843420 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1288 534 214 0 0 chr9 92232754 92232852 -31843320 - RLTR18 LTR ERVK -8 504 407 3 1288 984 257 44 84 chr9 92233670 92234231 -31841941 - RLTR18 LTR ERVK -100 412 15 3 1288 2357 179 31 7 chr9 92234627 92235078 -31841094 - RMER4A LTR ERVK 0 466 5 3 1288 1858 212 63 65 chr9 92235415 92235969 -31840203 + RLTR31_Mur LTR ERVK 1 553 0 3 1288 663 316 85 26 chr9 92237272 92237542 -31838630 - RMER15 LTR ERVL -16 559 274 3 1288 1222 35 0 0 chr9 92237680 92237823 -31838349 + B1_Mus1 SINE Alu 1 143 -5 3 1288 878 167 0 6 chr9 92237851 92238032 -31838140 + GA-rich Low_complexity Low_complexity 1 180 0 3 1288 212 250 16 82 chr9 92238644 92238705 -31837467 - B1_Mus1 SINE Alu -65 83 27 3 1288 354 45 0 0 chr9 92239056 92239100 -31837072 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1288 2615 312 91 37 chr9 92239111 92240836 -31835336 - Lx8 LINE L1 -134 7339 5467 3 1288 711 281 67 45 chr9 92240845 92241311 -31834861 + Lx8 LINE L1 5018 5493 -387 3 1288 233 284 62 21 chr9 92241326 92241423 -31834749 - MIR SINE MIR -55 207 107 3 1288 291 348 8 50 chr9 92241948 92242069 -31834103 + PB1D10 SINE Alu 2 117 0 3 1288 333 0 0 0 chr9 92242069 92242106 -31834066 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 3 1288 413 165 0 0 chr9 92242395 92242486 -31833686 - L1Md_F2 LINE L1 0 6582 6492 3 1288 5342 123 33 19 chr9 92243486 92244356 -31831816 - Lx2 LINE L1 0 6997 6116 3 1288 42 0 0 0 chr9 92244372 92244414 -31831758 + AT_rich Low_complexity Low_complexity 1 42 0 3 1288 244 289 0 118 chr9 92245429 92245531 -31830641 + RMER12 LTR ERVK 746 835 -487 3 1288 198 274 80 27 chr9 92247351 92247426 -31828746 + L4 LINE RTE 631 709 -1320 3 1288 355 238 48 0 chr9 92247758 92247842 -31828330 - MTEa LTR MaLR -10 369 282 3 1288 2804 150 202 20 chr9 92248272 92248856 -31827316 + RLTR17 LTR ERVK 3 692 0 3 1288 249 154 28 84 chr9 92249642 92249713 -31826459 + Lx8 LINE L1 7407 7473 0 3 1288 22 56 0 0 chr9 92249957 92249993 -31826179 + AT_rich Low_complexity Low_complexity 1 36 0 3 1288 236 253 38 0 chr9 92250503 92250582 -31825590 + L1MC5 LINE L1 7609 7690 -271 3 1288 1813 226 47 10 chr9 92250631 92251033 -31825139 + MTD LTR MaLR 3 419 0 3 1288 267 31 0 0 chr9 92251052 92251084 -31825088 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 3 1288 477 0 0 0 chr9 92251084 92251136 -31825036 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 3 1288 439 277 0 4 chr9 92251136 92251242 -31824930 - PB1D7 SINE Alu -8 112 10 3 1288 728 305 75 38 chr9 92251466 92251961 -31824211 - L1MA7 LINE L1 -10 6281 5769 3 1288 216 0 0 0 chr9 92251963 92251987 -31824185 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1288 219 308 62 0 chr9 92252056 92252121 -31824051 - PB1D10 SINE Alu -13 104 36 3 1288 2030 114 12 60 chr9 92252147 92252482 -31823690 - ORR1A4 LTR MaLR -8 321 3 3 1288 284 214 18 64 chr9 92252804 92252914 -31823258 - Lx2A LINE L1 -6 7002 6898 3 1288 279 0 0 0 chr9 92252976 92253007 -31823165 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1288 1542 205 33 55 chr9 92253809 92254176 -31821996 - ORR1C2 LTR MaLR -25 359 1 3 1288 692 299 23 14 chr9 92254549 92254763 -31821409 - ID_B1 SINE B4 -7 217 2 3 1288 28 79 0 0 chr9 92255340 92255403 -31820769 + AT_rich Low_complexity Low_complexity 1 63 0 3 1288 228 319 0 28 chr9 92255491 92255562 -31820610 - B4 SINE B4 -214 78 10 3 1288 436 257 40 0 chr9 92255917 92256018 -31820154 - ID_B1 SINE B4 -6 218 114 3 1288 804 255 111 46 chr9 92256791 92257071 -31819101 + RMER20B LTR ERVK 95 392 -235 3 1288 387 0 0 0 chr9 92257202 92257245 -31818927 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1288 273 330 67 51 chr9 92258818 92259013 -31817159 + L1MC2 LINE L1 6131 6328 -16 4 1288 269 224 26 13 chr9 92259418 92259495 -31816677 - RMER1A Other Other -15 1015 938 4 1288 7726 75 10 0 chr9 92259522 92261228 -31814944 - L1_Mus2 LINE L1 -1 6565 4841 4 1288 2244 205 122 15 chr9 92261232 92261763 -31814409 - RMER1B Other Other -69 997 410 4 1288 413 168 32 0 chr9 92262040 92262135 -31814037 + (CATATA)n Simple_repeat Simple_repeat 5 102 0 4 1288 302 271 167 0 chr9 92262924 92263068 -31813104 + L1M4 LINE L1 14 181 -6361 4 1288 360 316 65 44 chr9 92263753 92264140 -31812032 + L1M4 LINE L1 5262 5656 -988 4 1288 319 265 19 10 chr9 92264139 92264242 -31811930 + L1M4 LINE L1 6003 6106 -576 4 1288 207 0 0 0 chr9 92265068 92265091 -31811081 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1288 258 265 30 20 chr9 92265702 92265802 -31810370 + L1MC LINE L1 5634 5734 -610 4 1288 1544 163 169 3 chr9 92266066 92266367 -31809805 + ORR1B1 LTR MaLR 1 351 -43 4 1288 279 333 10 0 chr9 92267052 92267151 -31809021 + MER5A DNA MER1_type 78 177 -12 4 1288 186 103 0 0 chr9 92267343 92267372 -31808800 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1288 402 308 8 0 chr9 92267396 92267526 -31808646 + (TG)n Simple_repeat Simple_repeat 2 132 0 4 1288 731 244 98 137 chr9 92267593 92268054 -31808118 - RMER4A LTR ERVK -8 458 16 4 1288 339 298 0 21 chr9 92268970 92269066 -31807106 + G-rich Low_complexity Low_complexity 5 98 0 4 1288 229 263 18 0 chr9 92269708 92269765 -31806407 + CT-rich Low_complexity Low_complexity 1 58 0 4 1288 603 284 123 29 chr9 92270259 92270535 -31805637 - Lx8 LINE L1 0 7473 7172 4 1288 194 33 0 62 chr9 92270535 92270567 -31805605 + (GGGTG)n Simple_repeat Simple_repeat 4 33 0 4 1288 853 282 5 14 chr9 92270643 92270855 -31805317 - B3 SINE B2 -6 210 1 4 1288 243 0 0 0 chr9 92271357 92271384 -31804788 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1288 23 33 0 0 chr9 92271545 92271575 -31804597 + AT_rich Low_complexity Low_complexity 1 30 0 4 1288 358 278 128 9 chr9 92272107 92272216 -31803956 + B1F1 SINE Alu 1 122 -27 4 1288 192 77 0 0 chr9 92272332 92272358 -31803814 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1288 303 28 0 0 chr9 92272637 92272673 -31803499 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 1288 207 0 0 0 chr9 92273624 92273647 -31802525 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 2 2200 306 137 48 chr9 92273739 92275737 -31800435 - L1_Mur3 LINE L1 -89 5791 3613 4 1289 329 272 11 0 chr9 92275961 92276053 -31800119 - Lx7 LINE L1 -378 7318 7226 4 1289 29 0 0 0 chr9 92276204 92276233 -31799939 + AT_rich Low_complexity Low_complexity 1 29 0 4 1289 302 213 11 0 chr9 92276435 92276529 -31799643 + (TG)n Simple_repeat Simple_repeat 2 96 0 4 1289 230 268 18 0 chr9 92276886 92276942 -31799230 + MER45A DNA Tip100 96 152 -26 4 1289 1391 288 71 12 chr9 92279054 92279533 -31796639 + Tigger1 DNA MER2_type 1147 1653 -765 4 1289 1182 55 0 20 chr9 92279779 92279928 -31796244 + B1_Mm SINE Alu 2 147 0 4 1289 255 83 33 16 chr9 92279928 92279989 -31796183 + (CAAAAA)n Simple_repeat Simple_repeat 6 67 0 4 1289 327 17 16 48 chr9 92281003 92281065 -31795107 + L1_Mus3 LINE L1 6579 6638 0 4 1289 432 0 0 0 chr9 92281235 92281283 -31794889 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1289 727 285 120 8 chr9 92281286 92281643 -31794529 + L1_Mur3 LINE L1 5394 5790 -90 4 1289 2648 160 213 6 chr9 92281647 92282358 -31793814 - Lx5 LINE L1 -1154 5896 5034 4 1289 2137 267 115 38 chr9 92282352 92283117 -31793055 + Lx6 LINE L1 6276 7315 -145 4 1289 550 26 26 0 chr9 92283117 92283193 -31792979 + (TTG)n Simple_repeat Simple_repeat 2 79 0 4 1289 2137 266 117 39 chr9 92283193 92283272 -31792900 + Lx6 LINE L1 7316 7401 -59 4 1289 252 195 11 44 chr9 92283272 92283363 -31792809 + GA-rich Low_complexity Low_complexity 1 88 0 4 1289 332 328 2 1 chr9 92283376 92283532 -31792640 + Lx7 LINE L1 6956 7100 -596 4 1289 594 251 37 90 chr9 92283540 92283728 -31792444 - MTD LTR MaLR -124 295 118 4 1289 1535 259 42 15 chr9 92283720 92284123 -31792049 - MTD LTR MaLR -5 414 1 4 1289 297 317 171 7 chr9 92285500 92285646 -31790526 + B4A SINE B4 1 170 -122 4 1289 196 53 26 26 chr9 92285662 92285701 -31790471 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1289 306 152 0 0 chr9 92285832 92285891 -31790281 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1289 1589 246 50 28 chr9 92287824 92288221 -31787951 - MTD LTR MaLR -8 411 6 4 1289 3306 258 58 54 chr9 92288223 92289476 -31786696 - MTD-int LTR MaLR 0 1258 2 4 1289 1461 244 64 34 chr9 92289477 92289884 -31786288 - MTD LTR MaLR 0 419 1 4 1289 720 199 15 0 chr9 92290051 92290182 -31785990 - MT2A LTR ERVL -400 133 1 4 1289 1227 61 0 27 chr9 92290995 92291180 -31784992 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1289 1478 204 91 5 chr9 92291192 92291567 -31784605 - Lx LINE L1 -6 6648 6242 4 1289 20780 156 26 5 chr9 92291561 92294155 -31782017 - Lx LINE L1 -516 6138 3477 4 1289 3056 76 2 2 chr9 92294155 92294551 -31781621 - MTA_Mm LTR MaLR 0 396 1 4 1289 20780 165 26 5 chr9 92294551 92295404 -31780768 - Lx LINE L1 -2407 3476 2622 4 1289 207 0 0 0 chr9 92295404 92295427 -31780745 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 1289 288 0 0 0 chr9 92295427 92295458 -31780714 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 1289 20780 165 26 5 chr9 92295458 92296299 -31779873 - Lx LINE L1 -3262 2621 1765 4 1289 623 73 0 0 chr9 92296400 92296482 -31779690 + B2_Mm2 SINE B2 2 83 -112 4 1289 1017 67 0 22 chr9 92296890 92297027 -31779145 - B1_Mus1 SINE Alu 0 148 15 4 1289 225 215 9 0 chr9 92297136 92297199 -31778973 + A-rich Low_complexity Low_complexity 1 63 0 4 1289 212 233 0 0 chr9 92298307 92298350 -31777822 + CT-rich Low_complexity Low_complexity 1 43 0 4 1289 1600 272 7 28 chr9 92298576 92299004 -31777168 - MTD LTR MaLR 0 419 1 4 1289 302 294 92 40 chr9 92299485 92299637 -31776535 - MIRb SINE MIR -23 245 86 4 1289 361 204 94 54 chr9 92300464 92300606 -31775566 - B2_Mm2 SINE B2 0 195 49 4 1289 2595 120 35 44 chr9 92300862 92301341 -31774831 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1289 8385 32 9 0 chr9 92301341 92302368 -31773804 - IAPEz-int LTR ERVK 0 6481 5446 4 1289 1684 5 0 0 chr9 92302367 92302560 -31773612 - IAPEz-int LTR ERVK -2764 3717 3525 4 1289 886 73 24 0 chr9 92302560 92302683 -31773489 - IAPEz-int LTR ERVK -2770 4910 4785 4 1289 1695 123 4 4 chr9 92302680 92302942 -31773230 - IAPEz-int LTR ERVK -5183 2497 2236 4 1289 429 65 0 31 chr9 92302930 92302994 -31773178 - IAPEz-int LTR ERVK -5061 1420 1359 4 1289 4882 38 27 17 chr9 92302994 92303655 -31772517 - IAPEz-int LTR ERVK -5819 662 3 4 1289 2595 120 35 44 chr9 92303657 92304136 -31772036 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1289 273 266 99 0 chr9 92304207 92304322 -31771850 + MER5A1 DNA MER1_type 1 131 -35 4 1289 234 218 90 0 chr9 92304429 92304507 -31771665 + L1ME2z LINE L1 6353 6437 -7 4 1289 341 55 0 35 chr9 92306611 92306668 -31769504 + (CAGAGA)n Simple_repeat Simple_repeat 4 58 0 4 1289 400 254 27 0 chr9 92307422 92307532 -31768640 + Lx9 LINE L1 7339 7451 -193 4 1289 324 0 0 0 chr9 92307537 92307573 -31768599 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1289 395 299 48 8 chr9 92309928 92310055 -31766117 + MTD LTR MaLR 236 407 -12 4 1289 2659 137 0 68 chr9 92310237 92310723 -31765449 - RLTR11B LTR ERVK 0 453 1 4 1289 214 208 264 0 chr9 92310782 92310854 -31765318 - PB1D7 SINE Alu -20 100 10 4 1289 7291 65 0 13 chr9 92311308 92312543 -31763629 - L1Md_F2 LINE L1 -14 6568 5350 4 1289 685 231 36 31 chr9 92312543 92312766 -31763406 - RLTR15 LTR ERVK -135 224 1 4 1289 1310 221 100 33 chr9 92312789 92313150 -31763022 - Lx6 LINE L1 -10 7450 7066 4 1289 2375 271 107 6 chr9 92313150 92313187 -31762985 - Lx7 LINE L1 -756 6940 6904 4 1289 537 30 0 0 chr9 92313187 92313254 -31762918 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 4 1289 2375 271 107 6 chr9 92313254 92314021 -31762151 - Lx7 LINE L1 -793 6903 6056 4 1289 1676 176 73 10 chr9 92314016 92314071 -31762101 - Lx6 LINE L1 -1447 6013 5957 4 1289 315 0 0 0 chr9 92314071 92314106 -31762066 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1289 4339 172 30 17 chr9 92314106 92314695 -31761477 - Lx6 LINE L1 -1504 5956 5347 4 1289 5984 58 1 9 chr9 92314695 92315460 -31760712 + L1Md_F2 LINE L1 5824 6582 0 4 1289 4339 171 25 18 chr9 92315460 92315835 -31760337 - Lx6 LINE L1 -534 5346 4970 4 1289 2665 131 36 51 chr9 92315836 92316304 -31759868 - MT2C_Mm LTR ERVL -11 464 4 4 1289 4508 166 25 35 chr9 92316304 92317299 -31758873 - Lx6 LINE L1 -902 4978 3994 4 1289 33413 72 2 6 chr9 92317325 92323820 -31752352 - L1Md_F2 LINE L1 -12 6570 104 4 1289 2043 175 16 14 chr9 92323814 92324255 -31751917 - Lx6 LINE L1 -1947 3933 3492 4 1289 2986 73 24 10 chr9 92324257 92324671 -31751501 - BGLII LTR ERVK -1 420 1 4 1289 2626 207 72 55 chr9 92324672 92325382 -31750790 - RMER3D-int LTR ERVK -1 2841 2105 4 1289 991 16 31 0 chr9 92325382 92325509 -31750663 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 4 1289 2626 207 72 55 chr9 92325509 92325733 -31750439 - RMER3D-int LTR ERVK -738 2104 1891 4 1289 2396 179 99 72 chr9 92325701 92326382 -31749790 - RMER3D-int LTR ERVK -1149 1693 470 4 1289 735 93 45 32 chr9 92326408 92326564 -31749608 + CT-rich Low_complexity Low_complexity 3 160 0 4 1289 259 341 34 0 chr9 92326564 92326652 -31749520 + C-rich Low_complexity Low_complexity 5 95 0 4 1289 291 301 0 38 chr9 92326652 92326835 -31749337 + CT-rich Low_complexity Low_complexity 5 180 0 4 1289 300 306 0 32 chr9 92326868 92327054 -31749118 + CT-rich Low_complexity Low_complexity 1 180 0 4 1289 407 218 0 72 chr9 92327079 92327272 -31748900 + C-rich Low_complexity Low_complexity 2 180 0 4 1289 478 162 0 0 chr9 92327282 92327400 -31748772 - RMER3D-int LTR ERVK -2278 564 489 4 1289 2770 77 44 7 chr9 92327773 92328179 -31747993 - BGLII LTR ERVK 0 421 1 4 1289 1875 191 48 0 chr9 92328183 92328645 -31747527 - Lx6 LINE L1 -2388 3492 3009 4 1289 496 80 13 0 chr9 92328651 92328726 -31747446 - Lx6 LINE L1 -3134 2746 2671 4 1289 1560 135 131 7 chr9 92328750 92329033 -31747139 + ORR1A3 LTR MaLR 1 318 -8 4 1289 730 146 42 6 chr9 92329037 92329206 -31746966 + L1_Mur3 LINE L1 3818 4002 -1875 4 1289 3881 156 68 55 chr9 92329204 92329750 -31746422 - L1_Mur3 LINE L1 -3229 2651 2084 4 1289 180 0 0 0 chr9 92329750 92329770 -31746402 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1289 3881 156 68 55 chr9 92329770 92330196 -31745976 - L1_Mur3 LINE L1 -3797 2083 1667 4 1289 1714 50 22 5 chr9 92330213 92330436 -31745736 - L1Md_F3 LINE L1 -2 6582 6356 4 1289 2722 47 0 0 chr9 92330436 92330777 -31745395 + L1Md_F3 LINE L1 6021 6361 -221 4 1289 2237 162 16 14 chr9 92330771 92331266 -31744906 - L1_Mur3 LINE L1 -4160 1720 1225 4 1289 1740 153 96 36 chr9 92331268 92331694 -31744478 - RMER6C LTR ERVK -253 467 5 4 1289 1218 276 54 42 chr9 92331708 92332301 -31743871 - L1_Mur3 LINE L1 -7068 660 19 4 1289 461 292 64 11 chr9 92334115 92334302 -31741870 - L1_Rod LINE L1 -6509 663 467 4 1289 270 81 0 0 chr9 92335228 92335265 -31740907 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1289 551 328 26 26 chr9 92335308 92335540 -31740632 - MER2 DNA MER2_type -17 328 97 4 1289 21 36 0 0 chr9 92335781 92335809 -31740363 + AT_rich Low_complexity Low_complexity 1 28 0 4 1289 203 178 30 61 chr9 92337383 92337449 -31738723 + GA-rich Low_complexity Low_complexity 4 67 0 4 1289 235 247 170 30 chr9 92337754 92337854 -31738318 - RMER15 LTR ERVL -43 532 419 4 1289 493 307 39 13 chr9 92338360 92338515 -31737657 - RSINE1 SINE B4 -6 159 1 4 1289 2953 39 6 0 chr9 92338544 92338908 -31737264 - MTA_Mm LTR MaLR -30 366 1 4 1289 581 323 39 16 chr9 92338910 92339165 -31737007 - Lx8 LINE L1 -212 7261 7001 4 1289 396 330 80 33 chr9 92339926 92340139 -31736033 + L1MEf LINE L1 1032 1254 -4946 5 1289 761 316 105 9 chr9 92340238 92340819 -31735353 + L1M2 LINE L1 3600 4236 -1907 5 1289 680 316 129 24 chr9 92340846 92341225 -31734947 + MTD LTR MaLR 1 419 0 5 1289 36261 30 1 0 chr9 92341231 92348290 -31727882 - L1Md_T LINE L1 0 6585 1 5 1289 21 0 0 0 chr9 92348406 92348427 -31727745 + AT_rich Low_complexity Low_complexity 1 21 0 5 1289 1346 324 108 26 chr9 92348431 92349796 -31726376 + L1_Mur3 LINE L1 4394 5870 -10 5 1289 1595 225 50 12 chr9 92349802 92350225 -31725947 + Lx9 LINE L1 6527 6965 -679 5 1289 236 194 10 39 chr9 92350277 92350379 -31725793 + CT-rich Low_complexity Low_complexity 3 101 0 5 1289 556 218 0 0 chr9 92350495 92350596 -31725576 + MTE2a LTR MaLR 273 373 -6 5 1289 531 0 0 0 chr9 92350969 92351028 -31725144 + (CAAG)n Simple_repeat Simple_repeat 1 59 0 5 1289 1094 90 0 0 chr9 92351054 92351198 -31724974 + B1_Mus1 SINE Alu 5 148 0 5 1289 183 167 0 0 chr9 92351198 92351240 -31724932 + A-rich Low_complexity Low_complexity 1 42 0 5 1289 1019 69 86 18 chr9 92351732 92351895 -31724277 - L1Md_F2 LINE L1 -2 6580 6407 5 1289 189 0 0 0 chr9 92353185 92353206 -31722966 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1289 288 77 0 0 chr9 92354902 92354941 -31721231 + (TATG)n Simple_repeat Simple_repeat 1 39 0 5 1289 426 39 0 0 chr9 92356029 92356081 -31720091 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1289 966 127 0 7 chr9 92357543 92357686 -31718486 + B1_Mus1 SINE Alu 1 142 -6 5 1289 296 224 12 0 chr9 92357687 92357756 -31718416 + GA-rich Low_complexity Low_complexity 2 70 0 5 1289 1221 106 0 0 chr9 92357756 92357936 -31718236 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1289 296 224 12 0 chr9 92357936 92357951 -31718221 + polypurine Low_complexity Low_complexity 71 86 0 5 1289 406 343 120 51 chr9 92358147 92358439 -31717733 - L1M4 LINE L1 -1937 4209 3898 5 1289 247 341 86 11 chr9 92358573 92358955 -31717217 - L1M4 LINE L1 -2334 3806 3396 5 1289 243 0 0 0 chr9 92358983 92359010 -31717162 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1289 269 262 33 0 chr9 92359081 92359142 -31717030 - ID4_ SINE ID -10 73 11 5 1289 311 260 76 28 chr9 92359206 92359436 -31716736 - L1MEf LINE L1 -5187 1446 1207 5 1289 530 245 38 19 chr9 92359436 92359594 -31716578 - RSINE1 SINE B4 -4 161 1 5 1289 242 261 98 66 chr9 92359594 92359650 -31716522 - L1MEf LINE L1 -5427 1206 1151 5 1289 237 274 48 10 chr9 92359697 92359800 -31716372 - L1MEf LINE L1 -5518 1115 1009 5 1289 324 385 15 0 chr9 92360482 92360612 -31715560 + RSINE1 SINE B4 9 140 -25 5 1289 272 261 71 94 chr9 92360693 92360820 -31715352 - MER77 LTR ERVL -269 338 215 5 1289 375 326 59 83 chr9 92360718 92360972 -31715200 - MER21B LTR ERV1 -556 307 60 5 1289 574 326 0 0 chr9 92361407 92361551 -31714621 + B1F SINE Alu 1 144 -5 5 1289 588 115 0 0 chr9 92361551 92361655 -31714517 + (GA)n Simple_repeat Simple_repeat 1 104 0 5 1289 243 192 0 0 chr9 92362431 92362504 -31713668 + A-rich Low_complexity Low_complexity 1 73 0 5 1289 186 306 0 31 chr9 92363189 92363253 -31712919 - L4 LINE RTE -1438 591 530 5 1289 292 179 0 51 chr9 92363466 92363525 -31712647 - MTD LTR MaLR -54 365 310 5 1289 680 245 94 0 chr9 92363561 92363720 -31712452 - MTD LTR MaLR -240 179 6 5 1289 680 311 10 50 chr9 92363725 92364023 -31712149 + ERVL-B4-int LTR ERVL 1752 2037 -3677 5 1289 400 328 53 5 chr9 92364080 92364270 -31711902 + ERVL-B4-int LTR ERVL 2046 2244 -3513 5 1289 391 307 31 0 chr9 92364271 92364398 -31711774 + B1_Mur3 SINE Alu 6 136 -13 5 1289 201 256 0 0 chr9 92364408 92364451 -31711721 + GA-rich Low_complexity Low_complexity 2 44 0 5 1289 914 90 0 7 chr9 92364452 92364587 -31711585 + (GGAA)n Simple_repeat Simple_repeat 3 136 0 5 1289 399 279 54 0 chr9 92364628 92364775 -31711397 + ERVL-B4-int LTR ERVL 2242 2396 -3318 5 1289 757 238 26 17 chr9 92364779 92365010 -31711162 - L1_Mur3 LINE L1 -1073 4807 4575 5 1289 3648 211 36 132 chr9 92365007 92366067 -31710105 - L1_Mur3 LINE L1 -1763 4117 3079 5 1289 727 203 23 0 chr9 92366067 92366195 -31709977 - B1_Mur3 SINE Alu 0 149 19 5 1289 3648 211 36 132 chr9 92366195 92366215 -31709957 - L1_Mur3 LINE L1 -1763 3078 3058 5 1289 246 81 0 0 chr9 92366215 92366252 -31709920 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 5 1289 3648 211 36 132 chr9 92366252 92366506 -31709666 - L1_Mur3 LINE L1 -2823 3057 2797 5 1289 29 47 0 0 chr9 92366591 92366634 -31709538 + AT_rich Low_complexity Low_complexity 1 43 0 5 1289 561 252 0 0 chr9 92366645 92366760 -31709412 - B3A SINE B2 -83 115 1 5 1289 243 254 29 15 chr9 92368421 92368489 -31707683 + BC1_Mm scRNA scRNA 2 70 -82 5 1289 275 209 0 9 chr9 92368698 92368804 -31707368 + CT-rich Low_complexity Low_complexity 2 106 0 5 1289 500 175 28 38 chr9 92368815 92369109 -31707063 + (TCTCTG)n Simple_repeat Simple_repeat 1 290 0 5 1289 376 254 325 6 chr9 92369191 92369357 -31706815 - Lx8 LINE L1 -236 7237 7019 5 1289 992 290 48 24 chr9 92369351 92369687 -31706485 - Lx8 LINE L1 -845 6628 6285 5 1289 419 125 0 0 chr9 92370656 92370720 -31705452 + RLTR15 LTR ERVK 1 64 -295 5 1289 960 63 8 0 chr9 92370716 92370842 -31705330 + B1_Mus1 SINE Alu 22 148 0 5 1289 279 0 0 0 chr9 92370842 92370873 -31705299 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1289 1636 148 68 3 chr9 92370873 92371165 -31705007 + RLTR15 LTR ERVK 49 359 0 5 1289 297 0 0 0 chr9 92372410 92372443 -31703729 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1289 985 301 101 23 chr9 92372600 92373011 -31703161 + L1M3 LINE L1 3898 4310 -1830 5 1289 279 0 0 0 chr9 92373011 92373042 -31703130 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1289 985 301 101 23 chr9 92373042 92373313 -31702859 + L1M3 LINE L1 4311 4632 -1508 5 1289 243 301 171 0 chr9 92373317 92373516 -31702656 + L1_Mur3 LINE L1 4533 4765 -1115 5 1289 1201 250 96 47 chr9 92373520 92373906 -31702266 - MTD LTR MaLR -14 405 1 5 1289 592 286 127 37 chr9 92373915 92374088 -31702084 + L1M3 LINE L1 4807 4974 -1169 5 1289 324 0 0 0 chr9 92374088 92374124 -31702048 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1289 592 286 127 37 chr9 92374124 92374463 -31701709 + L1M3 LINE L1 4975 5364 -779 5 1289 591 272 36 7 chr9 92374521 92374658 -31701514 - RSINE1 SINE B4 -23 142 2 5 1289 605 267 48 48 chr9 92374663 92374975 -31701197 + L1M3 LINE L1 5377 5688 -603 5 1289 213 241 122 37 chr9 92375202 92375284 -31700888 + MIR SINE MIR 18 106 -156 5 1289 545 202 19 9 chr9 92375328 92375433 -31700739 + B1_Mur3 SINE Alu 19 124 -25 5 1289 874 107 0 0 chr9 92375438 92375559 -31700613 + B2_Mm2 SINE B2 10 130 -65 5 1289 504 0 0 0 chr9 92375587 92375643 -31700529 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 5 1289 676 121 211 8 chr9 92375645 92375778 -31700394 + MTD LTR MaLR 213 372 -47 5 1289 375 311 101 36 chr9 92375796 92376133 -31700039 + L1MB7 LINE L1 5666 6024 -160 5 1289 231 36 0 0 chr9 92376190 92376218 -31699954 + (CAG)n Simple_repeat Simple_repeat 2 29 0 5 1289 2481 45 0 16 chr9 92377996 92378329 -31697843 + L1Md_F3 LINE L1 6271 6584 0 5 1289 1017 126 0 0 chr9 92378329 92378472 -31697700 + B1_Mus1 SINE Alu 1 143 -5 5 1289 253 229 0 32 chr9 92378472 92378520 -31697652 + A-rich Low_complexity Low_complexity 14 61 0 5 1289 204 163 0 0 chr9 92379325 92379368 -31696804 + (CTA)n Simple_repeat Simple_repeat 2 44 0 5 1289 312 284 0 18 chr9 92379368 92379479 -31696693 + CT-rich Low_complexity Low_complexity 2 110 0 5 1289 297 0 0 0 chr9 92380172 92380205 -31695967 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1289 1110 248 125 5 chr9 92380379 92380748 -31695424 - Lx7 LINE L1 -596 7100 6688 5 1289 305 203 154 15 chr9 92380775 92380905 -31695267 - L1M2 LINE L1 -2349 3794 3647 5 1289 392 314 120 14 chr9 92380915 92381615 -31694557 - L1M2 LINE L1 -2653 3490 2686 5 1289 252 0 0 0 chr9 92381914 92381942 -31694230 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1289 991 75 8 0 chr9 92382089 92382222 -31693950 + B1_Mm SINE Alu 14 147 0 5 1289 531 31 0 0 chr9 92382234 92382299 -31693873 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1289 367 314 20 0 chr9 92382433 92382535 -31693637 + MER44D DNA MER2_type 8 111 -594 5 1289 324 324 127 38 chr9 92382612 92382824 -31693348 + MER44D DNA MER2_type 468 698 -7 5 1289 676 296 72 31 chr9 92382921 92383268 -31692904 - LTR40c LTR ERVL -49 470 76 5 1289 183 42 0 0 chr9 92386041 92386065 -31690107 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1289 322 302 126 31 chr9 92387923 92388217 -31687955 - Lx9 LINE L1 -322 7322 7001 5 1289 434 274 57 0 chr9 92388389 92388495 -31687677 + Lx9 LINE L1 7075 7186 -458 5 1289 22 35 0 0 chr9 92388613 92388642 -31687530 + AT_rich Low_complexity Low_complexity 1 29 0 5 1289 1046 288 52 3 chr9 92388654 92388940 -31687232 - Lx9 LINE L1 -662 6982 6683 5 1289 926 170 165 0 chr9 92388941 92389129 -31687043 - MTD LTR MaLR -8 411 193 5 1289 420 234 68 45 chr9 92389150 92389281 -31686891 - MTD LTR MaLR -194 225 96 5 1289 1190 82 0 14 chr9 92389281 92389429 -31686743 + B1_Mus2 SINE Alu 2 147 0 5 1289 572 115 0 9 chr9 92389430 92389544 -31686628 + (GAAAA)n Simple_repeat Simple_repeat 2 114 0 5 1289 353 214 39 22 chr9 92389544 92389645 -31686527 - MTD LTR MaLR -290 106 1 5 1289 725 278 10 63 chr9 92389648 92389855 -31686317 - Lx9 LINE L1 -957 6687 6492 5 1289 625 219 131 0 chr9 92389862 92390022 -31686150 + MTC LTR MaLR 4 184 -237 5 1289 1384 234 88 16 chr9 92390025 92390412 -31685760 - Lx9 LINE L1 -147 5700 5286 5 1289 3394 251 90 6 chr9 92390422 92391276 -31684896 - Lx6 LINE L1 0 7460 6535 5 1289 263 246 0 0 chr9 92391326 92391387 -31684785 - Lx9 LINE L1 -659 5188 5128 5 1289 1262 267 104 33 chr9 92391378 92391841 -31684331 - Lx8 LINE L1 -45 7428 6909 5 1289 1307 47 0 0 chr9 92392480 92392628 -31683544 + B1_Mus1 SINE Alu 1 148 0 5 1289 290 120 40 13 chr9 92393220 92393296 -31682876 + (TATAA)n Simple_repeat Simple_repeat 2 79 0 5 1289 1234 273 113 18 chr9 92393913 92394371 -31681801 - RMER5 LTR ERV1 0 534 33 5 1289 1524 114 5 0 chr9 92394912 92395132 -31681040 - Lx2 LINE L1 -3 6994 6774 5 1289 198 0 0 0 chr9 92395791 92395813 -31680359 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1289 365 291 102 8 chr9 92395881 92395999 -31680173 - B3A SINE B2 -3 195 67 5 1289 225 205 0 0 chr9 92396646 92396685 -31679487 + URR1A DNA MER1_type 36 74 -152 5 1289 559 203 7 42 chr9 92396877 92397010 -31679162 + PB1D10 SINE Alu 14 134 -180 5 1289 279 306 53 26 chr9 92397076 92397190 -31678982 - B3A SINE B2 -80 118 2 5 1289 810 88 0 0 chr9 92397706 92397831 -31678341 + (TG)n Simple_repeat Simple_repeat 2 126 0 5 1289 196 114 0 64 chr9 92398661 92398708 -31677464 + CT-rich Low_complexity Low_complexity 3 46 0 5 1289 1050 118 0 0 chr9 92398728 92398889 -31677283 + (TTTCC)n Simple_repeat Simple_repeat 4 164 0 5 1289 252 0 0 0 chr9 92398892 92398920 -31677252 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 1289 663 128 0 76 chr9 92398925 92399069 -31677103 - Lx3A LINE L1 -10 6971 6839 5 1289 225 0 0 0 chr9 92399586 92399611 -31676561 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1289 672 301 68 10 chr9 92399710 92400002 -31676170 - L1MA5 LINE L1 -365 5935 5627 6 1289 380 252 126 28 chr9 92400093 92400278 -31675894 + L1MA5A LINE L1 6068 6274 -23 6 1289 238 192 53 40 chr9 92400299 92400375 -31675797 + L1MA5 LINE L1 6190 6266 -34 6 1289 1001 212 11 6 chr9 92400489 92400669 -31675503 + B3A SINE B2 1 181 -17 6 1289 7438 115 2 23 chr9 92401245 92402693 -31673479 - L1_Mus4 LINE L1 -6 6630 5213 6 1289 498 141 0 42 chr9 92402693 92402789 -31673383 + B2_Mm2 SINE B2 98 189 -6 6 1289 477 330 43 48 chr9 92403347 92403535 -31672637 + MLT1G LTR MaLR 62 248 -343 6 1289 515 270 68 17 chr9 92403538 92403715 -31672457 + Charlie1a DNA MER1_type 996 1181 -274 6 1289 201 312 36 36 chr9 92404143 92404226 -31671946 - L2b LINE L2 -323 3052 2970 6 1289 361 95 0 31 chr9 92404383 92404448 -31671724 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 6 1289 282 114 0 22 chr9 92404889 92404934 -31671238 + Lx9 LINE L1 7284 7327 -317 6 1289 445 53 0 17 chr9 92404922 92404980 -31671192 - L1Md_T LINE L1 -223 6359 6303 6 1289 2050 21 0 25 chr9 92404980 92405219 -31670953 + L1Md_F3 LINE L1 6341 6573 -11 6 1289 1070 214 78 7 chr9 92405234 92405540 -31670632 + Lx9 LINE L1 7315 7642 -2 6 1290 405 239 147 53 chr9 92405910 92406060 -31670112 + B3 SINE B2 53 216 0 6 1290 596 195 34 26 chr9 92406112 92406284 -31669888 + RMER1B Other Other 857 1066 0 6 1290 306 0 0 0 chr9 92406498 92406532 -31669640 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1290 210 309 30 30 chr9 92407836 92407936 -31668236 - MIRm SINE MIR -1 275 176 6 1290 200 61 0 57 chr9 92409170 92409205 -31666967 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 6 1290 846 211 205 43 chr9 92409420 92409771 -31666401 + RLTRETN_Mm LTR ERVK 1 408 -1 6 1290 3964 163 23 110 chr9 92409771 92410736 -31665436 + MMETn-int LTR ERVK 11 891 -3953 6 1290 517 193 133 8 chr9 92410731 92410851 -31665321 + MMETn-int LTR ERVK 1954 2088 -5318 6 1290 4314 149 58 74 chr9 92410873 92411845 -31664327 + MMETn-int LTR ERVK 1995 3441 -3965 6 1290 8607 190 40 34 chr9 92412235 92415256 -31660916 + MMETn-int LTR ERVK 2356 4498 -346 6 1290 713 199 95 102 chr9 92415258 92415579 -31660593 + RLTR13B1 LTR ERVK 153 477 -378 6 1290 451 86 27 67 chr9 92415579 92415654 -31660518 + MMETn-int LTR ERVK 7334 7405 -1 6 1290 913 192 117 63 chr9 92415654 92415989 -31660183 + RLTRETN_Mm LTR ERVK 1 409 0 6 1290 432 0 0 0 chr9 92416007 92416055 -31660117 + (GGAGA)n Simple_repeat Simple_repeat 2 49 0 6 1290 659 44 11 0 chr9 92416068 92416159 -31660013 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 1290 183 100 78 20 chr9 92416628 92416679 -31659493 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 6 1290 1122 196 40 0 chr9 92417891 92418090 -31658082 + B3 SINE B2 5 211 -5 6 1290 688 288 97 130 chr9 92418106 92418497 -31657675 - MTD LTR MaLR -41 378 1 6 1290 350 284 51 84 chr9 92419019 92419197 -31656975 - L1M2 LINE L1 -265 5612 5430 6 1290 26 0 0 0 chr9 92419312 92419338 -31656834 + AT_rich Low_complexity Low_complexity 1 26 0 6 1290 721 268 36 37 chr9 92419862 92420420 -31655752 - L1M2 LINE L1 -745 5417 5124 6 1290 292 271 24 0 chr9 92420580 92420665 -31655507 - RMER1B Other Other -919 147 61 6 1290 1336 27 0 0 chr9 92420883 92421030 -31655142 + B1_Mm SINE Alu 1 147 0 6 1290 1505 253 89 44 chr9 92421061 92422072 -31654100 - RMER1B Other Other -125 941 45 6 1290 860 224 55 24 chr9 92422548 92422809 -31653363 - L1_Rod LINE L1 -4449 1398 1124 6 1290 533 219 50 37 chr9 92422811 92422972 -31653200 - RMER13B LTR ERVK -4 904 742 6 1290 624 263 64 18 chr9 92423004 92423243 -31652929 - RMER13B LTR ERVK -277 612 365 6 1290 387 321 48 21 chr9 92423789 92424034 -31652138 + L1MA4 LINE L1 5687 5926 -374 6 1290 1363 248 94 7 chr9 92425700 92426106 -31650066 - RMER5 LTR ERV1 -10 524 84 6 1290 1944 231 19 33 chr9 92427284 92427614 -31648558 + L1_Rod LINE L1 4586 4915 -932 6 1290 396 0 0 0 chr9 92427614 92427658 -31648514 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1290 1944 231 19 33 chr9 92427658 92427868 -31648304 + L1_Rod LINE L1 4916 5118 -729 6 1290 5434 262 51 25 chr9 92427872 92429785 -31646387 - L1_Mur3 LINE L1 -435 5445 3483 6 1290 1677 232 86 33 chr9 92429789 92430251 -31645921 - L1_Mur3 LINE L1 -3266 2614 2122 6 1290 1282 41 0 0 chr9 92430251 92430396 -31645776 + B1_Mus2 SINE Alu 1 145 -2 6 1290 504 0 0 0 chr9 92430396 92430452 -31645720 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1290 1677 232 86 33 chr9 92430452 92430500 -31645672 - L1_Mur3 LINE L1 -3759 2121 2077 6 1290 208 246 0 14 chr9 92431407 92431481 -31644691 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1290 1427 255 64 52 chr9 92431553 92431959 -31644213 - MTD LTR MaLR -8 411 1 6 1290 316 340 106 33 chr9 92433728 92434029 -31642143 + L2 LINE L2 2566 2888 -531 6 1290 22 35 0 0 chr9 92437031 92437060 -31639112 + GC_rich Low_complexity Low_complexity 1 29 0 6 1290 222 43 85 0 chr9 92438472 92438519 -31637653 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 6 1290 1039 263 25 36 chr9 92439033 92439313 -31636859 + B4 SINE B4 2 278 -14 6 1290 314 252 97 97 chr9 92439391 92439536 -31636636 - MER20 DNA MER1_type -74 145 1 6 1290 346 210 0 0 chr9 92439635 92439697 -31636475 - AluG_3 SINE Alu -93 218 157 6 1290 348 326 83 21 chr9 92441203 92441483 -31634689 + MER58B DNA MER1_type 10 315 -26 6 1290 315 0 0 0 chr9 92441946 92441981 -31634191 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1290 1724 21 21 0 chr9 92442387 92442575 -31633597 - B2_Mm1a SINE B2 0 193 2 6 1290 345 292 34 42 chr9 92443431 92443549 -31632623 - PB1D7 SINE Alu -3 117 1 6 1290 219 186 0 0 chr9 92446836 92446879 -31629293 + T-rich Low_complexity Low_complexity 1 43 0 6 1290 213 266 175 12 chr9 92446898 92446978 -31629194 - ID_B1 SINE B4 -130 94 2 6 1290 594 333 49 34 chr9 92447295 92447562 -31628610 - B4A SINE B4 0 292 22 6 1290 278 219 27 14 chr9 92447882 92447956 -31628216 + ID4_ SINE ID 1 75 -8 6 1290 184 200 16 16 chr9 92448395 92448456 -31627716 + CT-rich Low_complexity Low_complexity 2 62 0 6 1290 393 22 0 0 chr9 92448495 92448541 -31627631 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1290 324 0 0 0 chr9 92448552 92448588 -31627584 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1290 311 0 26 0 chr9 92448588 92448626 -31627546 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1290 489 87 38 19 chr9 92448657 92448762 -31627410 + (TCTG)n Simple_repeat Simple_repeat 2 108 0 6 1290 198 0 0 0 chr9 92448764 92448786 -31627386 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1290 429 147 0 0 chr9 92448803 92448898 -31627274 + (TC)n Simple_repeat Simple_repeat 2 96 0 6 1290 396 0 0 0 chr9 92448898 92448942 -31627230 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1290 473 277 97 16 chr9 92451179 92451436 -31624736 - L1MA6 LINE L1 -227 6073 5796 6 1290 1237 35 0 0 chr9 92451438 92451583 -31624589 - B1_Mus1 SINE Alu 0 148 4 6 1290 423 0 0 0 chr9 92452519 92452566 -31623606 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1290 907 209 71 5 chr9 92452652 92452863 -31623309 + URR1B DNA MER1_type 1 225 0 6 1290 893 272 24 32 chr9 92453459 92453710 -31622462 + B4A SINE B4 42 290 -2 6 1290 249 354 0 0 chr9 92455242 92455321 -31620851 + ID4 SINE ID 2 80 -3 6 1290 221 57 29 0 chr9 92455946 92455981 -31620191 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 6 1290 318 332 102 19 chr9 92456726 92456932 -31619240 + L2 LINE L2 2550 2772 -647 6 1290 263 262 16 0 chr9 92458126 92458187 -31617985 + MER5A DNA MER1_type 128 189 0 6 1290 1105 265 195 2 chr9 92459071 92459465 -31616707 - MTEa-int LTR MaLR -1079 501 32 6 1290 435 334 52 60 chr9 92459504 92459856 -31616316 - MTEa LTR MaLR -12 367 1 6 1290 21 36 0 0 chr9 92460221 92460249 -31615923 + AT_rich Low_complexity Low_complexity 1 28 0 6 1290 380 20 0 20 chr9 92460287 92460337 -31615835 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 6 1290 970 213 15 15 chr9 92460359 92460559 -31615613 - B3 SINE B2 -15 201 2 6 1290 212 286 35 35 chr9 92461013 92461071 -31615101 - ID4 SINE ID -1 82 25 6 1290 258 246 46 0 chr9 92462016 92462081 -31614091 - L3 LINE CR1 -369 4120 4053 6 1290 22 0 0 0 chr9 92462229 92462251 -31613921 + AT_rich Low_complexity Low_complexity 1 22 0 6 1290 302 189 5 40 chr9 92463789 92463908 -31612264 - B3A SINE B2 -16 182 1 6 1290 228 392 0 10 chr9 92463950 92464048 -31612124 + MIR SINE MIR 55 151 -57 6 1290 265 314 154 45 chr9 92464255 92464502 -31611670 - MER68 LTR ERVL -20 543 270 6 1290 778 231 88 13 chr9 92464593 92464821 -31611351 - ORR1C1 LTR MaLR -133 245 1 6 1290 959 62 47 0 chr9 92470160 92470443 -31605729 + (TC)n Simple_repeat Simple_repeat 1 296 0 6 1290 285 29 0 0 chr9 92470443 92470476 -31605696 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1290 415 80 13 39 chr9 92471253 92471331 -31604841 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1290 212 352 21 21 chr9 92471658 92471751 -31604421 - L2c LINE L2 0 3387 3295 6 1290 429 284 60 0 chr9 92472916 92473050 -31603122 + ID_B1 SINE B4 82 223 -1 6 1290 207 100 0 0 chr9 92473449 92473479 -31602693 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 6 1290 354 138 0 0 chr9 92473482 92473540 -31602632 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 6 1290 525 71 0 0 chr9 92473676 92473746 -31602426 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 1290 420 71 0 0 chr9 92473746 92473802 -31602370 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1290 314 307 29 29 chr9 92474607 92474711 -31601461 + PB1D10 SINE Alu 9 112 -5 6 1290 7884 44 0 1 chr9 92476633 92477756 -31598416 - L1Md_F2 LINE L1 0 6582 5461 6 1290 449 206 60 52 chr9 92478450 92478605 -31597567 + B3A SINE B2 54 209 -7 6 1290 761 144 0 7 chr9 92479970 92480117 -31596055 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 6 1290 618 276 47 40 chr9 92480453 92480729 -31595443 + B4A SINE B4 1 278 -14 6 1290 288 0 0 0 chr9 92483114 92483146 -31593026 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1290 649 256 0 0 chr9 92484652 92484781 -31591391 - B1_Mur1 SINE Alu -19 130 2 6 1290 289 319 32 42 chr9 92487187 92487282 -31588890 - RSINE1 SINE B4 -5 160 67 7 1290 242 246 14 28 chr9 92488830 92488901 -31587271 - MADE2 DNA Mariner 0 80 11 7 1290 207 0 0 0 chr9 92489154 92489177 -31586995 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1290 368 306 65 36 chr9 92490805 92490944 -31585228 - B4A SINE B4 -149 143 1 7 1290 491 261 93 91 chr9 92491978 92492237 -31583935 - MTE2b LTR MaLR -113 306 51 7 1290 250 231 0 0 chr9 92492369 92492421 -31583751 - MTE2b LTR MaLR -327 52 1 7 1290 208 147 0 0 chr9 92495068 92495102 -31581070 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 7 1290 26 30 0 0 chr9 92496890 92496923 -31579249 + AT_rich Low_complexity Low_complexity 1 33 0 7 1290 26 30 0 0 chr9 92498119 92498152 -31578020 + AT_rich Low_complexity Low_complexity 1 33 0 7 1290 234 0 0 0 chr9 92498242 92498268 -31577904 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1290 187 54 54 0 chr9 92501797 92501834 -31574338 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1290 180 239 118 66 chr9 92502471 92502547 -31573625 + MIRb SINE MIR 43 122 -146 2 1290 22 35 0 0 chr9 92503092 92503121 -31573051 + AT_rich Low_complexity Low_complexity 1 29 0 3 1290 25 31 0 0 chr9 92503234 92503266 -31572906 + AT_rich Low_complexity Low_complexity 1 32 0 4 1290 567 0 0 0 chr9 92504211 92504274 -31571898 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 1290 306 0 0 0 chr9 92504275 92504309 -31571863 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1290 1342 174 4 13 chr9 92506675 92506902 -31569270 - URR1B DNA MER1_type 0 225 1 7 1290 618 208 92 0 chr9 92508636 92508756 -31567416 - B1_Mur2 SINE Alu -10 139 9 8 1290 238 261 138 0 chr9 92509220 92509285 -31566887 + ORR1D2 LTR MaLR 108 181 -189 9 1290 266 279 0 0 chr9 92509285 92509353 -31566819 + CT-rich Low_complexity Low_complexity 1 68 0 1 1290 823 179 53 43 chr9 92509363 92509550 -31566622 + ORR1D2 LTR MaLR 173 361 -9 9 1290 209 234 12 38 chr9 92511550 92511630 -31564542 + T-rich Low_complexity Low_complexity 2 79 0 1 1290 358 300 11 11 chr9 92511814 92511905 -31564267 + RSINE1 SINE B4 3 93 -72 1 1290 22 0 0 0 chr9 92512832 92512854 -31563318 + AT_rich Low_complexity Low_complexity 1 22 0 1 1290 4450 126 10 4 chr9 92513114 92513813 -31562359 - L1_Mur1 LINE L1 -721 5165 4463 1 1290 1521 229 94 8 chr9 92513826 92514218 -31561954 + Lx2B LINE L1 6563 6988 -12 1 1290 21 36 0 0 chr9 92514218 92514246 -31561926 + AT_rich Low_complexity Low_complexity 1 28 0 1 1290 564 236 92 26 chr9 92514257 92514409 -31561763 + B2_Mm2 SINE B2 1 162 -33 1 1290 960 120 0 0 chr9 92514417 92514567 -31561605 + (TCTA)n Simple_repeat Simple_repeat 3 152 0 1 1290 334 278 202 22 chr9 92514684 92514912 -31561260 - L1M5 LINE L1 -634 5528 5260 1 1290 567 284 19 108 chr9 92514980 92515012 -31561160 - B3A SINE B2 -3 195 171 2 1290 315 0 0 0 chr9 92515012 92515047 -31561125 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1290 567 284 19 108 chr9 92515047 92515227 -31560945 - B3A SINE B2 -28 170 2 2 1290 23 33 0 0 chr9 92515298 92515328 -31560844 + AT_rich Low_complexity Low_complexity 1 30 0 2 1290 207 0 0 0 chr9 92515928 92515951 -31560221 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 1290 207 0 0 0 chr9 92517278 92517301 -31558871 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2 1290 755 330 36 24 chr9 92517874 92518206 -31557966 - RLTR18B LTR ERVK 0 512 177 2 1290 723 294 47 61 chr9 92518267 92518564 -31557608 - RLTR18 LTR ERVK -311 305 13 2 1290 319 296 9 18 chr9 92519039 92519149 -31557023 + Lx9 LINE L1 7225 7333 -311 2 1290 318 26 0 0 chr9 92519260 92519299 -31556873 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 2 1290 251 263 26 26 chr9 92519299 92519416 -31556756 + (CATATA)n Simple_repeat Simple_repeat 6 122 0 2 1290 2749 71 3 3 chr9 92519732 92520069 -31556103 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1290 29429 16 1 1 chr9 92520069 92523309 -31552863 - IAPEz-int LTR ERVK 0 6481 3244 3 1290 22173 32 40 14 chr9 92523301 92525977 -31550195 - IAPEz-int LTR ERVK -3730 2751 8 3 1290 2737 74 3 3 chr9 92525977 92526314 -31549858 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1290 420 246 138 76 chr9 92528172 92528462 -31547710 + L1M5 LINE L1 2921 3228 -2918 3 1290 367 202 8 8 chr9 92528699 92528819 -31547353 + (CA)n Simple_repeat Simple_repeat 1 120 0 3 1290 479 222 132 38 chr9 92528908 92529067 -31547105 + L1M5 LINE L1 3667 3840 -2306 3 1290 426 85 0 0 chr9 92529324 92529383 -31546789 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1290 1156 288 18 43 chr9 92529830 92530269 -31545903 - Lx9 LINE L1 -332 7312 6885 3 1290 2529 252 76 105 chr9 92530269 92530389 -31545783 - L1_Rod LINE L1 -57 5790 5682 3 1290 2455 105 6 0 chr9 92530389 92530714 -31545458 + ORR1A2 LTR MaLR 1 327 0 3 1290 2529 252 76 105 chr9 92530714 92531799 -31544373 - L1_Rod LINE L1 -166 5681 4620 3 1290 1194 231 33 68 chr9 92531819 92532215 -31543957 - MT2B LTR ERVL -14 587 87 3 1290 423 179 0 0 chr9 92532318 92532375 -31543797 - B1_Mus2 SINE Alu -9 138 82 3 1290 1774 214 45 99 chr9 92532375 92532922 -31543250 - RMER19C LTR ERVK -3 608 59 3 1290 378 153 82 14 chr9 92532908 92532981 -31543191 - MT2B LTR ERVL -523 78 1 3 1290 905 279 60 56 chr9 92532984 92533293 -31542879 - L1M2 LINE L1 -1479 4664 4335 4 1290 261 0 0 0 chr9 92533293 92533322 -31542850 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1290 905 279 60 56 chr9 92533322 92533494 -31542678 - L1M2 LINE L1 -1809 4334 4182 4 1290 712 278 27 22 chr9 92533532 92533716 -31542456 - B3 SINE B2 -3 213 29 4 1290 688 295 0 5 chr9 92533742 92533926 -31542246 - L1_Rod LINE L1 -1719 4128 3946 3 1290 198 118 0 0 chr9 92535048 92535082 -31541090 + (TTA)n Simple_repeat Simple_repeat 2 35 0 4 1290 353 311 59 129 chr9 92535089 92535148 -31541024 - B4 SINE B4 0 292 240 4 1290 1276 53 88 55 chr9 92535148 92535293 -31540879 + B2_Mm2 SINE B2 2 142 -53 4 1290 315 0 0 0 chr9 92535293 92535328 -31540844 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1290 1276 53 88 55 chr9 92535328 92535363 -31540809 + B2_Mm2 SINE B2 143 187 -8 4 1290 360 311 59 129 chr9 92535363 92535606 -31540566 - B4A SINE B4 -53 239 11 4 1290 3814 25 87 5 chr9 92535827 92536266 -31539906 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1290 279 326 54 43 chr9 92536454 92536640 -31539532 - MIRb SINE MIR -14 254 67 4 1291 266 0 0 0 chr9 92537443 92537479 -31538693 + RLTR10 LTR ERVK 1 36 -354 4 1291 4895 33 10 2 chr9 92537479 92538246 -31537926 + RLTR10-int LTR ERVK 298 998 -989 4 1291 374 271 31 8 chr9 92538310 92538440 -31537732 + RLTR10-int LTR ERVK 1462 1594 -5987 4 1291 8703 33 0 1 chr9 92538522 92539518 -31536654 + RLTR10-int LTR ERVK 990 1984 -3 5 1291 3395 29 2 33 chr9 92539520 92539918 -31536254 + RLTR10 LTR ERVK 1 386 -4 5 1291 2101 50 4 0 chr9 92539934 92540194 -31535978 + RLTR10-int LTR ERVK 41 301 -1686 5 1291 397 311 83 37 chr9 92540576 92540793 -31535379 - L1MC3 LINE L1 -7 7778 7552 5 1291 243 0 0 0 chr9 92540814 92540841 -31535331 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1291 600 268 204 14 chr9 92540861 92541141 -31535031 - L1MC3 LINE L1 -738 7047 6715 5 1291 944 158 8 13 chr9 92541174 92541403 -31534769 + CT-rich Low_complexity Low_complexity 1 228 0 5 1291 225 154 0 0 chr9 92541410 92541449 -31534723 + (TTG)n Simple_repeat Simple_repeat 1 39 0 5 1291 368 235 101 53 chr9 92541775 92542042 -31534130 - MER33 DNA MER1_type -127 197 31 5 1291 694 220 45 0 chr9 92542045 92542177 -31533995 + B1_Mus2 SINE Alu 3 140 -7 5 1291 3176 18 0 0 chr9 92542208 92542545 -31533627 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1291 57691 18 8 6 chr9 92542545 92549005 -31527167 - IAPEz-int LTR ERVK 0 6481 8 5 1291 3149 21 0 0 chr9 92549005 92549342 -31526830 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1291 287 114 0 0 chr9 92549354 92549398 -31526774 + B1_Mur4 SINE Alu 100 143 -7 5 1291 265 270 20 101 chr9 92550589 92550688 -31525484 + LTR16B2 LTR ERVL 110 200 -262 5 1291 627 14 0 0 chr9 92551446 92551518 -31524654 + (TC)n Simple_repeat Simple_repeat 2 73 0 6 1291 908 252 58 34 chr9 92551654 92551982 -31524190 + RLTR15 LTR ERVK 8 343 -16 6 1291 1797 210 73 20 chr9 92551998 92552169 -31524003 + RMER5 LTR ERV1 3 182 -352 6 1291 1899 125 112 3 chr9 92552169 92552473 -31523699 - Lx2 LINE L1 -2 6995 6659 6 1291 1797 210 73 20 chr9 92552473 92552709 -31523463 + RMER5 LTR ERV1 183 432 -102 6 1291 1148 302 73 63 chr9 92553326 92553511 -31522661 - Lx8 LINE L1 -20 7453 7282 6 1291 1699 169 79 7 chr9 92553511 92553814 -31522358 - ORR1A4 LTR MaLR -4 325 1 6 1291 1148 302 73 63 chr9 92553814 92554215 -31521957 - Lx8 LINE L1 -192 7281 6861 6 1291 627 263 115 8 chr9 92554289 92554559 -31521613 + L1_Mur3 LINE L1 5528 5801 -79 6 1291 339 333 193 12 chr9 92555080 92555329 -31520843 - Lx8 LINE L1 -6 7467 7174 6 1291 544 262 24 24 chr9 92555792 92555999 -31520173 + L1M5 LINE L1 2746 2952 -3194 6 1291 213 39 0 0 chr9 92556118 92556144 -31520028 + (TTG)n Simple_repeat Simple_repeat 1 26 0 6 1291 262 280 0 0 chr9 92556145 92556195 -31519977 - ID2 SINE ID -32 51 2 7 1291 1801 283 57 22 chr9 92556523 92557245 -31518927 + L1MB7 LINE L1 5410 6156 -28 7 1291 305 346 83 52 chr9 92557435 92557664 -31518508 + L1MC LINE L1 3455 3690 -2456 7 1291 331 322 66 52 chr9 92557787 92558000 -31518172 + L1MD LINE L1 3866 4081 -2065 7 1291 395 283 56 93 chr9 92558401 92558715 -31517457 - B4 SINE B4 -22 270 11 7 1291 665 232 174 50 chr9 92558790 92559130 -31517042 + Lx7 LINE L1 7298 7679 -17 7 1291 352 362 135 23 chr9 92559180 92559663 -31516509 + L1M5 LINE L1 4749 5285 -861 6 1291 366 23 0 0 chr9 92559665 92559708 -31516464 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1291 410 362 52 28 chr9 92559776 92560100 -31516072 + L1M5 LINE L1 5329 5660 -502 6 1291 589 258 0 22 chr9 92560286 92560421 -31515751 - B1_Mur1 SINE Alu -15 134 3 7 1291 21 82 0 0 chr9 92560820 92560869 -31515303 + AT_rich Low_complexity Low_complexity 1 49 0 7 1291 932 345 83 42 chr9 92563666 92564356 -31511816 + MTE-int LTR MaLR 101 777 -593 7 1291 3318 122 2 4 chr9 92564567 92565061 -31511111 - L1_Mus4 LINE L1 0 6636 6144 8 1291 4755 140 15 60 chr9 92565061 92566448 -31509724 - L1VL4 LINE L1 -1944 1615 305 8 1291 244 331 107 8 chr9 92566476 92566598 -31509574 - MER5A DNA MER1_type -22 167 34 8 1291 345 366 0 0 chr9 92567435 92567528 -31508644 + MLT1E3 LTR MaLR 322 414 -210 8 1291 7334 185 70 18 chr9 92567622 92569411 -31506761 + Lx7 LINE L1 4234 6182 -1514 8 1291 474 18 0 0 chr9 92569411 92569466 -31506706 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1291 4069 216 128 26 chr9 92569466 92569987 -31506185 + Lx7 LINE L1 6183 6735 -961 8 1291 963 118 31 6 chr9 92569987 92570149 -31506023 - RMER6C LTR ERVK 0 690 525 8 1291 2466 21 3 0 chr9 92570149 92570433 -31505739 + L1Md_F2 LINE L1 5589 5873 -709 8 1291 375 371 24 0 chr9 92570456 92570580 -31505592 + MTEb LTR MaLR 134 260 -119 8 1291 492 167 11 0 chr9 92570582 92570672 -31505500 - Lx7 LINE L1 -876 6820 6730 8 1291 1879 192 103 40 chr9 92570672 92571166 -31505006 + RMER6C LTR ERVK 1 525 -165 9 1291 228 363 111 0 chr9 92571394 92571565 -31504607 - MLT2B4 LTR ERVL -19 548 359 9 1291 3598 93 2 2 chr9 92571598 92572083 -31504089 - L1_Mus1 LINE L1 -19 5864 5380 9 1291 4443 80 96 3 chr9 92572083 92572719 -31503453 + L1_Mus1 LINE L1 5872 6566 -1 9 1291 593 325 52 26 chr9 92572740 92573012 -31503160 + Lx8 LINE L1 7110 7388 -85 9 1291 489 17 0 0 chr9 92573136 92573194 -31502978 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1291 374 337 34 39 chr9 92573222 92573401 -31502771 - MLT2B4 LTR ERVL -378 178 1 9 1291 3403 275 78 72 chr9 92573538 92574249 -31501923 - Tigger1 DNA MER2_type -225 2193 1524 9 1291 474 308 87 11 chr9 92574249 92574433 -31501739 + B3 SINE B2 4 201 -15 9 1291 342 0 0 0 chr9 92574438 92574476 -31501696 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 9 1291 3403 275 78 72 chr9 92574476 92575253 -31500919 - Tigger1 DNA MER2_type -900 1518 692 9 1291 7473 113 10 3 chr9 92575476 92576923 -31499249 - L1_Mus4 LINE L1 0 6636 5181 9 1291 919 301 155 56 chr9 92576923 92577535 -31498637 - Tigger1 DNA MER2_type -1715 703 31 9 1291 195 235 0 0 chr9 92577864 92577915 -31498257 + CT-rich Low_complexity Low_complexity 6 56 0 9 1291 459 0 0 0 chr9 92578452 92578503 -31497669 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1291 230 241 0 18 chr9 92579446 92579501 -31496671 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1291 288 308 13 13 chr9 92579532 92579611 -31496561 - RMER20B LTR ERVK -24 603 525 1 1291 1450 271 146 43 chr9 92579637 92580173 -31495999 - RMER20B LTR ERVK -36 591 1 1 1291 1193 279 68 27 chr9 92582091 92582755 -31493417 - Lx4B LINE L1 -1 7049 6479 1 1291 24 0 0 0 chr9 92583774 92583798 -31492374 + AT_rich Low_complexity Low_complexity 1 24 0 1 1291 1138 276 27 52 chr9 92584112 92584597 -31491575 - L1M2 LINE L1 -1379 4764 4292 1 1291 528 246 152 5 chr9 92584645 92584829 -31491343 + L1_Rod LINE L1 4020 4255 -1885 1 1291 270 0 0 0 chr9 92584866 92584896 -31491276 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1291 2037 322 60 25 chr9 92584940 92585858 -31490314 + Lx9 LINE L1 6382 7331 -313 1 1291 300 186 0 0 chr9 92586705 92586764 -31489408 + CT-rich Low_complexity Low_complexity 3 61 0 1 1291 237 229 68 76 chr9 92586918 92587036 -31489136 - Charlie13a DNA Charlie -737 777 661 1 1291 606 93 0 0 chr9 92587047 92587133 -31489039 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1291 1189 192 0 18 chr9 92587755 92587983 -31488189 - URR1B DNA MER1_type -1 224 1 1 1291 3241 72 0 2 chr9 92588000 92588434 -31487738 - L1_Mm LINE L1 -3288 2595 2163 1 1291 2943 84 2 5 chr9 92588434 92588839 -31487333 + L1_Mus2 LINE L1 6158 6561 -5 1 1291 495 0 0 0 chr9 92588871 92588926 -31487246 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1291 232 235 28 56 chr9 92589739 92589811 -31486361 - RLTR1D LTR ERV1 -445 160 91 1 1291 333 155 0 0 chr9 92589811 92589869 -31486303 + T-rich Low_complexity Low_complexity 1 58 0 1 1291 23 0 0 0 chr9 92589881 92589904 -31486268 + AT_rich Low_complexity Low_complexity 1 23 0 1 1291 409 323 65 20 chr9 92589904 92590103 -31486069 + RMER15 LTR ERVL 363 570 -5 1 1291 195 114 0 0 chr9 92590610 92590645 -31485527 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1291 24 32 0 0 chr9 92591288 92591319 -31484853 + AT_rich Low_complexity Low_complexity 1 31 0 1 1291 606 105 0 0 chr9 92591319 92591424 -31484748 + (TC)n Simple_repeat Simple_repeat 1 105 0 1 1291 333 0 0 0 chr9 92591424 92591461 -31484711 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1291 583 228 0 0 chr9 92591470 92591571 -31484601 - RSINE1 SINE B4 -44 121 21 1 1291 3987 44 0 26 chr9 92591969 92592003 -31484169 - MURVY-LTR LTR ERV1 0 519 495 1 1291 3141 36 0 3 chr9 92592003 92592369 -31483803 - RLTR10B2 LTR ERVK 0 365 1 1 1291 3987 44 0 26 chr9 92592369 92592867 -31483305 - MURVY-LTR LTR ERV1 -25 494 1 1 1291 301 317 103 24 chr9 92594965 92595091 -31481081 - ID_B1 SINE B4 -84 140 5 1 1291 446 287 82 0 chr9 92595923 92596045 -31480127 + ID_B1 SINE B4 91 222 -2 1 1291 271 283 96 42 chr9 92595934 92596100 -31480072 - YREP_Mm Unknown Unknown -1516 296 122 1 1291 241 24 23 47 chr9 92597424 92597467 -31478705 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 1 1291 23 54 0 0 chr9 92598093 92598130 -31478042 + AT_rich Low_complexity Low_complexity 1 37 0 1 1291 729 247 84 0 chr9 92598521 92598687 -31477485 + B3A SINE B2 19 198 0 1 1291 844 335 31 49 chr9 92600098 92600484 -31475688 + MTEa LTR MaLR 1 379 0 1 1291 321 350 82 86 chr9 92603708 92603976 -31472196 + B4A SINE B4 2 275 -17 1 1291 462 18 0 0 chr9 92603976 92604031 -31472141 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1291 321 350 82 86 chr9 92604031 92604053 -31472119 + B4A SINE B4 276 291 -1 1 1291 23 0 0 0 chr9 92604076 92604099 -31472073 + AT_rich Low_complexity Low_complexity 1 23 0 1 1291 902 293 171 20 chr9 92604268 92604717 -31471455 - Lx8 LINE L1 -235 7238 6722 1 1291 386 326 100 48 chr9 92604878 92605500 -31470672 + L1M2 LINE L1 1909 2562 -4287 1 1291 251 294 74 25 chr9 92606102 92606224 -31469948 + ID_B1 SINE B4 90 217 -7 1 1291 459 125 0 0 chr9 92606254 92606326 -31469846 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1291 1075 208 31 0 chr9 92606329 92606555 -31469617 - RMER1C Other Other -6 1336 1104 1 1291 3401 87 0 2 chr9 92606553 92607012 -31469160 - L1_Mus3 LINE L1 -545 6093 5636 1 1291 2357 254 23 26 chr9 92607013 92607743 -31468429 - L1VL4 LINE L1 -5519 783 138 1 1291 8153 35 4 1 chr9 92608341 92609491 -31466681 - L1Md_F2 LINE L1 -534 6048 4896 1 1291 4036 48 4 10 chr9 92609491 92610012 -31466160 + L1Md_F2 LINE L1 6064 6581 -1 1 1291 3687 187 71 49 chr9 92610606 92611467 -31464705 - Lx5 LINE L1 -4 7046 6129 1 1291 270 0 0 0 chr9 92611715 92611745 -31464427 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1 1291 972 305 51 29 chr9 92614845 92615196 -31460976 + ORR1E LTR MaLR 1 359 0 1 1291 560 261 143 7 chr9 92615225 92615379 -31460793 + B3A SINE B2 2 176 -22 1 1291 221 0 0 33 chr9 92615380 92615410 -31460762 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1291 349 322 33 26 chr9 92615622 92615775 -31460397 - MER5B DNA MER1_type -1 177 24 1 1291 914 291 44 113 chr9 92616669 92617076 -31459096 - MTE2b LTR MaLR 0 379 1 1 1291 773 95 9 0 chr9 92617697 92617813 -31458359 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 1 1291 404 288 48 0 chr9 92618084 92618105 -31458067 - L1_Mur3 LINE L1 -1040 5103 5077 1 1291 4969 22 2 0 chr9 92618105 92618639 -31457533 - L1Md_F2 LINE L1 -15 6567 6033 1 1291 541 243 1 0 chr9 92618639 92618763 -31457409 - L1_Mur3 LINE L1 -1067 5076 4921 1 1291 885 338 30 33 chr9 92618772 92619167 -31457005 + Lx8 LINE L1 6929 7322 -151 1 1291 426 129 0 0 chr9 92619600 92619685 -31456487 + (TC)n Simple_repeat Simple_repeat 1 85 0 1 1291 7081 222 20 22 chr9 92620068 92621544 -31454628 - Lx7 LINE L1 0 7696 6224 1 1291 346 237 0 49 chr9 92621574 92621676 -31454496 - Lx9 LINE L1 -656 6988 6892 1 1291 2104 329 74 28 chr9 92622091 92622183 -31453989 + MTE-int LTR MaLR 598 679 -901 1 1291 390 21 0 0 chr9 92622183 92622230 -31453942 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1291 2104 329 74 28 chr9 92622230 92622890 -31453282 + MTE-int LTR MaLR 680 1385 -195 1 1291 5220 248 40 43 chr9 92622903 92624271 -31451901 + ORR1C2-int LTR MaLR 2 1365 -5 1 1291 434 217 0 0 chr9 92624276 92624359 -31451813 + ORR1C2 LTR MaLR 1 83 -291 1 1291 1245 96 0 0 chr9 92624359 92624537 -31451635 + (TC)n Simple_repeat Simple_repeat 1 178 0 1 1291 1158 117 0 8 chr9 92624559 92624808 -31451364 + (TTC)n Simple_repeat Simple_repeat 1 247 0 1 1291 572 244 58 35 chr9 92624812 92624958 -31451214 + ORR1C2 LTR MaLR 175 326 -58 1 1291 453 36 0 0 chr9 92624958 92625013 -31451159 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1 1291 572 244 58 35 chr9 92625013 92625040 -31451132 + ORR1C2 LTR MaLR 327 352 -32 1 1291 28 48 0 0 chr9 92625789 92625831 -31450341 + AT_rich Low_complexity Low_complexity 1 42 0 1 1291 196 171 0 0 chr9 92626650 92626685 -31449487 - MIRm SINE MIR -137 139 105 1 1291 21 36 0 0 chr9 92626919 92626947 -31449225 + AT_rich Low_complexity Low_complexity 1 28 0 1 1291 639 0 0 0 chr9 92627893 92627964 -31448208 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1291 1631 302 21 14 chr9 92627966 92628477 -31447695 - Lx7 LINE L1 -430 7266 6752 1 1291 1716 263 21 30 chr9 92628509 92629239 -31446933 + Lx7 LINE L1 5366 6095 -1601 1 1291 409 308 19 0 chr9 92629396 92629503 -31446669 - MTD LTR MaLR -54 365 257 1 1291 2807 85 32 32 chr9 92629503 92629914 -31446258 - IAPLTR2a LTR ERVK 0 411 1 1 1291 56436 13 11 2 chr9 92629914 92636133 -31440039 - IAPEz-int LTR ERVK 0 6481 211 1 1291 895 70 9 0 chr9 92636136 92636250 -31439922 - IAPEz-int LTR ERVK -6199 282 168 1 1291 232 327 0 0 chr9 92636250 92636305 -31439867 - RLTR27 LTR ERVK -34 275 221 1 1291 1169 76 0 155 chr9 92636305 92636524 -31439648 - IAPEz-int LTR ERVK -6288 193 9 1 1291 2813 81 34 34 chr9 92636525 92636936 -31439236 - IAPLTR2a LTR ERVK 0 411 1 1 1291 1072 183 115 17 chr9 92636938 92637172 -31439000 - MTD LTR MaLR -159 260 4 1 1291 412 325 8 45 chr9 92638290 92638422 -31437750 - RSINE1 SINE B4 -36 129 3 1 1291 432 0 0 0 chr9 92638583 92638631 -31437541 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1291 303 235 38 25 chr9 92638867 92639024 -31437148 + (TATAA)n Simple_repeat Simple_repeat 1 159 0 1 1291 5630 32 3 0 chr9 92639036 92639660 -31436512 - L1Md_F2 LINE L1 -3 6579 5954 1 1291 223 132 31 69 chr9 92639752 92639882 -31436290 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 1 1291 1766 217 108 39 chr9 92639964 92640043 -31436129 - RLTR20A LTR ERVK -14 527 441 1 1291 429 20 0 0 chr9 92640043 92640093 -31436079 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1291 1766 217 108 39 chr9 92640093 92640506 -31435666 - RLTR20A LTR ERVK -101 440 2 1 1291 400 289 44 16 chr9 92640506 92640689 -31435483 - L1M2 LINE L1 -573 5727 5540 1 1291 499 154 8 79 chr9 92641107 92641234 -31434938 - L1Md_F2 LINE L1 -1 6581 6464 1 1291 702 324 70 17 chr9 92641243 92641770 -31434402 - L1M2 LINE L1 -3157 2986 2432 1 1291 270 286 117 26 chr9 92643187 92643457 -31432715 - L1M2 LINE L1 -1231 4909 4617 1 1291 306 169 51 0 chr9 92643462 92643521 -31432651 + RMER15 LTR ERVL 514 575 0 1 1291 375 23 0 0 chr9 92643656 92643700 -31432472 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1291 2729 143 40 74 chr9 92643894 92644393 -31431779 + RLTR45 LTR ERVK 1 482 0 1 1291 867 215 104 100 chr9 92644499 92644768 -31431404 + RMER1B Other Other 58 327 -739 1 1291 725 237 100 14 chr9 92644793 92645003 -31431169 + RMER1B Other Other 838 1065 -1 1 1291 8435 153 40 5 chr9 92645189 92646636 -31429536 - L1_Mm LINE L1 -695 5188 3691 1 1291 331 296 100 13 chr9 92647071 92647300 -31428872 + L1MDa LINE L1 1631 1879 -4754 1 1291 359 238 28 56 chr9 92647346 92647453 -31428719 + ID_B1 SINE B4 119 222 -2 1 1291 243 79 0 0 chr9 92647467 92647505 -31428667 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1291 337 311 124 38 chr9 92647510 92647970 -31428202 + L1M2 LINE L1 4669 5183 -957 1 1291 436 360 7 0 chr9 92648051 92648187 -31427985 - B1F SINE Alu -10 139 3 1 1291 469 204 117 27 chr9 92648275 92648386 -31427786 + B1_Mur4 SINE Alu 15 135 -15 1 1291 1398 22 0 17 chr9 92648428 92648609 -31427563 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1 1291 325 53 18 18 chr9 92648752 92648809 -31427363 + (CAAAA)n Simple_repeat Simple_repeat 3 59 0 1 1291 650 179 16 16 chr9 92649001 92649126 -31427046 - B1_Mur2 SINE Alu -7 142 18 1 1291 272 213 37 138 chr9 92649029 92649138 -31427034 - MT2B LTR ERVL -337 264 167 1 1291 404 289 77 45 chr9 92649149 92649305 -31426867 - ID_B1 SINE B4 0 224 64 2 1291 736 194 0 30 chr9 92649412 92649545 -31426627 - B3 SINE B2 -86 130 2 2 1291 263 299 107 34 chr9 92649781 92649930 -31426242 + RSINE1 SINE B4 3 162 -3 2 1291 567 0 0 0 chr9 92650714 92650777 -31425395 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1291 370 278 113 0 chr9 92650788 92650885 -31425287 + B3 SINE B2 103 210 -6 2 1291 320 48 0 60 chr9 92650886 92650953 -31425219 + (TTTTTG)n Simple_repeat Simple_repeat 4 66 0 2 1291 751 165 165 0 chr9 92650955 92651082 -31425090 - B1_Mur3 SINE Alu 0 149 2 2 1291 887 179 15 0 chr9 92651108 92651242 -31424930 + B1_Mur1 SINE Alu 5 140 -9 2 1291 928 328 24 48 chr9 92651484 92651779 -31424393 - B4A SINE B4 0 292 5 2 1291 478 285 21 7 chr9 92652348 92652493 -31423679 + B1F2 SINE Alu 3 149 0 2 1291 803 206 191 16 chr9 92652501 92652684 -31423488 + B3 SINE B2 2 216 0 2 1291 280 238 12 24 chr9 92653270 92653352 -31422820 - RMER1A Other Other -651 379 299 2 1291 608 266 8 0 chr9 92653400 92653524 -31422648 + MTD LTR MaLR 79 203 -216 2 1291 1206 181 42 27 chr9 92653718 92653979 -31422193 + RMER17C-int LTR ERVK 1384 1648 -1590 2 1291 18129 54 4 7 chr9 92653981 92656265 -31419907 + L1Md_F3 LINE L1 3308 5586 -297 2 1291 8732 43 2 2 chr9 92656265 92657263 -31418909 + L1Md_F3 LINE L1 5587 6584 0 2 1291 1336 163 9 4 chr9 92657263 92657491 -31418681 + RMER17C-int LTR ERVK 1638 1866 -1372 2 1291 507 73 0 0 chr9 92658087 92658155 -31418017 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1291 1521 168 30 0 chr9 92658155 92658423 -31417749 - Lx LINE L1 -8 6646 6371 2 1291 257 302 0 0 chr9 92658632 92658685 -31417487 + B4A SINE B4 240 292 0 2 1291 307 217 6 0 chr9 92658711 92658769 -31417403 + PB1D10 SINE Alu 61 143 -6 2 1291 255 270 16 0 chr9 92658958 92659021 -31417151 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1291 351 0 0 0 chr9 92659032 92659071 -31417101 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1291 486 0 0 0 chr9 92659071 92659125 -31417047 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1291 259 145 76 37 chr9 92659356 92659416 -31416756 - B1F1 SINE Alu -1 149 87 2 1291 229 339 0 0 chr9 92659492 92659548 -31416624 - B3A SINE B2 -142 56 1 2 1291 1075 162 16 16 chr9 92660093 92660281 -31415891 + MTC LTR MaLR 1 188 -233 2 1291 302 282 25 13 chr9 92660568 92660647 -31415525 - Cheshire DNA MER1_type -1515 905 826 2 1291 318 292 53 9 chr9 92661117 92661231 -31414941 + Cheshire DNA MER1_type 531 649 -1771 2 1291 1387 99 16 10 chr9 92661253 92661446 -31414726 - B2_Mm2 SINE B2 0 195 2 2 1291 798 177 42 7 chr9 92661449 92661591 -31414581 - B1_Mur3 SINE Alu 0 149 3 2 1291 498 278 8 8 chr9 92661656 92661783 -31414389 + RSINE1 SINE B4 17 143 -22 2 1291 26 0 0 0 chr9 92661783 92661809 -31414363 + AT_rich Low_complexity Low_complexity 1 26 0 2 1291 364 313 75 68 chr9 92661809 92661970 -31414202 + B3A SINE B2 1 162 -36 2 1291 284 161 70 70 chr9 92662047 92662147 -31414025 + B2_Mm2 SINE B2 94 195 0 2 1291 330 267 39 29 chr9 92662162 92662266 -31413906 + PB1D10 SINE Alu 10 114 -3 2 1291 204 67 0 0 chr9 92662296 92662326 -31413846 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2 1291 1462 240 57 11 chr9 92663873 92664227 -31411945 + ORR1D2 LTR MaLR 1 370 0 2 1291 379 323 31 23 chr9 92664281 92664411 -31411761 + RMER15 LTR ERVL 443 573 -2 2 1291 189 0 0 0 chr9 92665023 92665044 -31411128 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1291 344 82 16 0 chr9 92665073 92665134 -31411038 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 2 1291 422 289 101 22 chr9 92666650 92666788 -31409384 + B1F SINE Alu 1 149 0 2 1291 368 330 26 9 chr9 92666830 92666943 -31409229 - ID_B1 SINE B4 -7 217 103 2 1291 319 288 53 64 chr9 92667039 92667210 -31408962 - L1MEe LINE L1 -3954 900 732 2 1291 390 91 0 0 chr9 92667280 92667335 -31408837 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1291 774 271 89 103 chr9 92667349 92667641 -31408531 - B4 SINE B4 -2 290 3 2 1291 21 36 0 0 chr9 92667649 92667677 -31408495 + AT_rich Low_complexity Low_complexity 1 28 0 2 1292 558 224 55 43 chr9 92667914 92668077 -31408095 - ORR1D2 LTR MaLR 0 370 206 2 1292 299 270 58 19 chr9 92669566 92669671 -31406501 + L1MB1 LINE L1 5945 6053 -238 2 1292 24 0 0 0 chr9 92669688 92669712 -31406460 + AT_rich Low_complexity Low_complexity 1 24 0 2 1292 517 264 20 20 chr9 92669874 92670021 -31406151 - B3 SINE B2 -4 212 66 2 1292 314 249 150 3 chr9 92670021 92670186 -31405986 - L1_Mur3 LINE L1 -32 5815 5642 2 1292 571 320 104 20 chr9 92670653 92671302 -31404870 - L1_Mur3 LINE L1 -219 5661 4993 2 1292 1121 264 50 10 chr9 92671327 92671743 -31404429 + L1M2 LINE L1 4444 4876 -1267 2 1292 523 324 16 0 chr9 92672638 92672820 -31403352 - MER53 DNA hAT -4 189 5 2 1292 24 32 0 0 chr9 92673323 92673354 -31402818 + AT_rich Low_complexity Low_complexity 1 31 0 2 1292 184 339 100 17 chr9 92673412 92673469 -31402703 + MIRb SINE MIR 86 145 -123 2 1292 216 0 0 0 chr9 92673469 92673493 -31402679 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1292 184 339 100 17 chr9 92673493 92673555 -31402617 + MIRb SINE MIR 146 214 -54 2 1292 32 26 0 0 chr9 92673760 92673799 -31402373 + AT_rich Low_complexity Low_complexity 1 39 0 2 1292 880 270 122 12 chr9 92673859 92674204 -31401968 - Lx9 LINE L1 -6 7638 7256 2 1292 294 293 10 10 chr9 92674209 92674309 -31401863 - Lx9 LINE L1 -286 7358 7259 2 1292 468 312 88 44 chr9 92674311 92674539 -31401633 - Lx9 LINE L1 -1045 6599 6362 2 1292 2553 324 73 43 chr9 92674572 92675676 -31400496 - Lx8 LINE L1 -28 7445 6310 2 1292 266 0 29 0 chr9 92675676 92675710 -31400462 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1292 2553 324 73 43 chr9 92675710 92675980 -31400192 - Lx8 LINE L1 -1164 6309 6029 2 1292 300 37 18 36 chr9 92676024 92676080 -31400092 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 2 1292 22 35 0 0 chr9 92676714 92676743 -31399429 + AT_rich Low_complexity Low_complexity 1 29 0 2 1292 309 127 18 0 chr9 92677971 92678026 -31398146 - MER67C LTR ERV1 -646 65 10 2 1292 608 346 53 8 chr9 92678144 92678409 -31397763 - RMER15 LTR ERVL -1 574 298 2 1292 1502 194 159 7 chr9 92678813 92679083 -31397089 + Lx5 LINE L1 837 1110 -5976 2 1292 3180 74 7 27 chr9 92679083 92679526 -31396646 + L1_Mus2 LINE L1 6133 6566 0 2 1292 24347 164 37 9 chr9 92679526 92680415 -31395757 + Lx5 LINE L1 1111 2060 -3817 2 1292 345 24 0 0 chr9 92680415 92680457 -31395715 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1292 24347 162 31 9 chr9 92680457 92682217 -31393955 + Lx5 LINE L1 2061 3856 -2021 2 1292 375 41 0 0 chr9 92682217 92682266 -31393906 + (CAA)n Simple_repeat Simple_repeat 2 50 0 2 1292 24347 161 25 10 chr9 92682266 92684305 -31391867 + Lx5 LINE L1 3857 5969 -1081 2 1292 703 228 0 36 chr9 92684298 92684466 -31391706 + Lx5 LINE L1 6112 6273 -777 2 1292 4090 222 45 11 chr9 92684738 92685586 -31390586 + Lx5 LINE L1 6174 7050 0 2 1292 241 295 99 21 chr9 92685610 92685752 -31390420 + L1MA10 LINE L1 6174 6326 -8 2 1292 1460 303 20 13 chr9 92685911 92686305 -31389867 + MTD LTR MaLR 3 399 -20 2 1292 891 123 18 0 chr9 92686709 92686872 -31389300 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 2 1292 1705 246 57 36 chr9 92686950 92687444 -31388728 - MER67C LTR ERV1 -73 638 135 2 1292 3852 289 40 22 chr9 92687682 92688491 -31387681 - Lx8 LINE L1 -1 7472 6650 2 1292 234 0 0 0 chr9 92688491 92688517 -31387655 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1292 3852 289 40 22 chr9 92688517 92688982 -31387190 - Lx8 LINE L1 -824 6649 6175 2 1292 584 345 81 47 chr9 92693603 92694011 -31382161 + MLT2B3 LTR ERVL 1 422 -132 2 1292 228 86 0 0 chr9 92695489 92695524 -31380648 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1292 228 296 227 0 chr9 92695730 92695862 -31380310 - Tigger7 DNA MER2_type -2040 451 290 2 1292 360 64 0 0 chr9 92696327 92696374 -31379798 + (TCC)n Simple_repeat Simple_repeat 2 48 0 2 1292 6774 180 37 11 chr9 92696402 92698242 -31377930 - Lx3C LINE L1 -1 6975 5092 2 1292 501 104 0 0 chr9 92698241 92698318 -31377854 + L1_Mur1 LINE L1 2625 2701 -3185 2 1292 6577 174 101 7 chr9 92698308 92699765 -31376407 - Lx3C LINE L1 -2907 2979 1386 2 1292 1299 54 12 0 chr9 92699776 92699944 -31376228 - L1_Mus1 LINE L1 -1 6566 6397 2 1292 2403 122 40 2 chr9 92699943 92700405 -31375767 - Lx3C LINE L1 -4491 1395 917 2 1292 180 0 0 0 chr9 92701805 92701825 -31374347 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1292 234 0 0 0 chr9 92703195 92703221 -31372951 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1292 287 354 0 0 chr9 92703417 92703499 -31372673 + PB1 SINE Alu 19 100 -27 2 1292 3004 40 40 3 chr9 92703499 92703870 -31372302 + IAPEY_LTR LTR ERVK 1 385 0 2 1292 446 329 140 28 chr9 92705001 92705495 -31370677 - Arthur1B DNA Tip100 -57 1168 620 2 1292 907 223 56 0 chr9 92705506 92705703 -31370469 - B3 SINE B2 -6 210 3 2 1292 1132 301 52 25 chr9 92705831 92706196 -31369976 - MTEa LTR MaLR -4 375 1 2 1292 248 208 0 0 chr9 92706308 92706361 -31369811 + BGLII_B LTR ERVK 3 55 -386 2 1292 1003 236 48 11 chr9 92706364 92706634 -31369538 + BGLII_B LTR ERVK 162 441 0 2 1292 543 290 7 30 chr9 92706819 92706954 -31369218 + RSINE1 SINE B4 11 142 -23 2 1292 540 0 0 0 chr9 92706972 92707032 -31369140 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1292 25 31 0 0 chr9 92708659 92708691 -31367481 + AT_rich Low_complexity Low_complexity 1 32 0 2 1292 241 370 49 42 chr9 92708805 92708949 -31367223 - Kanga1a DNA Tc2 -362 392 248 2 1292 22 0 0 0 chr9 92708965 92708987 -31367185 + AT_rich Low_complexity Low_complexity 1 22 0 2 1292 534 279 289 59 chr9 92710263 92710568 -31365604 - MTEa LTR MaLR -2 377 3 2 1292 2613 307 37 18 chr9 92710574 92711367 -31364805 - MTEa-int LTR MaLR -23 1557 750 2 1292 361 255 85 141 chr9 92711377 92711752 -31364420 - RLTR15 LTR ERVK -5 354 1 2 1292 1148 318 74 15 chr9 92711753 92712213 -31363959 - MTEa-int LTR MaLR -826 754 268 2 1292 1065 205 193 13 chr9 92712245 92712551 -31363621 + ORR1D1 LTR MaLR 5 365 -9 2 1292 247 228 18 0 chr9 92712851 92712908 -31363264 + MTEa LTR MaLR 252 309 -110 2 1292 322 289 46 15 chr9 92713085 92713215 -31362957 + Lx9 LINE L1 7305 7438 -206 2 1292 416 111 0 12 chr9 92713235 92713317 -31362855 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1292 22 80 0 0 chr9 92714395 92714445 -31361727 + AT_rich Low_complexity Low_complexity 1 50 0 3 1292 251 238 52 13 chr9 92714663 92714751 -31361421 + MTEa LTR MaLR 269 377 -2 2 1292 367 287 0 0 chr9 92715736 92715837 -31360335 - L3 LINE CR1 -2336 2153 2053 3 1292 1793 142 75 49 chr9 92716747 92717096 -31359076 + RMER17B LTR ERVK 1 358 -600 3 1292 269 326 36 29 chr9 92717160 92717299 -31358873 + RMER17B LTR ERVK 819 958 0 3 1292 38 68 0 0 chr9 92717453 92717526 -31358646 + AT_rich Low_complexity Low_complexity 1 73 0 3 1292 22 88 0 0 chr9 92717577 92717634 -31358538 + AT_rich Low_complexity Low_complexity 1 57 0 3 1292 893 270 15 0 chr9 92717824 92718028 -31358144 + B3 SINE B2 6 212 -4 3 1292 381 322 9 0 chr9 92718304 92718419 -31357753 - ID_B1 SINE B4 0 224 109 3 1292 1922 121 6 35 chr9 92718585 92718902 -31357270 - RLTR9D LTR ERVK -4 399 92 3 1292 5195 20 0 0 chr9 92718902 92719505 -31356667 + L1Md_T LINE L1 4984 5586 -297 3 1292 8015 56 0 0 chr9 92719505 92720501 -31355671 + L1Md_T LINE L1 5587 6582 0 3 1292 485 0 0 0 chr9 92720520 92720574 -31355598 + L1Md_F2 LINE L1 6382 6435 -147 3 1292 378 0 0 0 chr9 92720574 92720616 -31355556 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1292 718 135 0 0 chr9 92720616 92720720 -31355452 - RLTR9D LTR ERVK -316 104 1 3 1292 4644 170 18 82 chr9 92721300 92722356 -31353816 + RLTR22_Mur LTR ERVK 1 988 -860 3 1292 690 204 224 14 chr9 92722508 92722722 -31353450 + RLTR22_Mur LTR ERVK 1590 1848 0 3 1292 1489 228 30 22 chr9 92722958 92723325 -31352847 - ORR1D1 LTR MaLR -4 370 1 3 1292 180 0 0 0 chr9 92723873 92723893 -31352279 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1292 284 355 32 24 chr9 92724652 92724776 -31351396 + MLT1A1 LTR MaLR 4 128 -280 3 1292 434 289 122 5 chr9 92726179 92726337 -31349835 + B3 SINE B2 1 180 -36 3 1292 534 31 0 0 chr9 92726337 92726401 -31349771 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1292 434 289 122 5 chr9 92726401 92726430 -31349742 + B3 SINE B2 181 209 -7 3 1292 309 354 87 11 chr9 92726435 92726618 -31349554 - MER63B DNA AcHobo -46 390 194 3 1292 1282 308 22 3 chr9 92726780 92727135 -31349037 + Lx9 LINE L1 6359 6720 -924 3 1292 285 335 21 36 chr9 92727163 92727355 -31348817 + Lx9 LINE L1 7266 7454 -190 3 1292 817 263 41 10 chr9 92727651 92727847 -31348325 - B3 SINE B2 -7 209 8 3 1292 283 274 76 23 chr9 92727864 92727995 -31348177 - MER63B DNA AcHobo -294 142 5 3 1292 207 0 0 0 chr9 92729937 92729960 -31346212 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 3 1292 242 211 62 80 chr9 92730070 92730183 -31345989 - Tigger9a DNA Tigger -49 683 573 3 1292 6431 50 9 5 chr9 92730703 92731508 -31344664 + RLTR13C2 LTR ERVK 1 808 0 3 1292 423 280 9 0 chr9 92731905 92732012 -31344160 + RSINE1 SINE B4 2 109 -56 3 1292 195 42 0 0 chr9 92732384 92732408 -31343764 + (CTG)n Simple_repeat Simple_repeat 2 25 0 3 1292 479 160 11 0 chr9 92732406 92732500 -31343672 + CT-rich Low_complexity Low_complexity 3 97 0 3 1292 204 156 22 0 chr9 92732817 92732862 -31343310 + (GTTTG)n Simple_repeat Simple_repeat 4 49 0 3 1292 1645 212 95 18 chr9 92733007 92733396 -31342776 + MTC LTR MaLR 3 421 0 3 1292 388 313 8 15 chr9 92733970 92734103 -31342069 + C-rich Low_complexity Low_complexity 1 132 0 3 1292 214 384 76 40 chr9 92734471 92734696 -31341476 - L2a LINE L2 -237 3189 2957 3 1292 487 238 47 41 chr9 92734757 92734928 -31341244 + RMER5 LTR ERV1 33 204 -330 3 1292 316 310 43 18 chr9 92734995 92735274 -31340898 - L1M3f LINE L1 -4111 1217 932 3 1292 2584 133 7 21 chr9 92735391 92735812 -31340360 + L1_Mus4 LINE L1 6215 6629 -7 3 1292 189 0 0 0 chr9 92735836 92735857 -31340315 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1292 24 0 0 0 chr9 92738475 92738499 -31337673 + AT_rich Low_complexity Low_complexity 1 24 0 3 1292 21 0 0 0 chr9 92739164 92739185 -31336987 + AT_rich Low_complexity Low_complexity 1 21 0 3 1292 23 33 0 0 chr9 92739301 92739331 -31336841 + AT_rich Low_complexity Low_complexity 1 30 0 3 1292 8208 132 20 3 chr9 92739418 92740736 -31335436 + L1_Mur1 LINE L1 4538 5877 -9 3 1292 3550 148 25 2 chr9 92740737 92741338 -31334834 + Lx2B LINE L1 6372 6986 -14 3 1292 456 19 0 0 chr9 92741553 92741606 -31334566 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 3 1292 2514 122 19 21 chr9 92741607 92742027 -31334145 - BGLII_Mus LTR ERVK 0 422 4 3 1292 618 14 0 0 chr9 92742027 92742098 -31334074 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1292 384 22 0 0 chr9 92743084 92743129 -31333043 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 3 1292 410 330 73 17 chr9 92743503 92743682 -31332490 + ORR1E LTR MaLR 1 189 -170 3 1292 732 80 0 0 chr9 92743684 92743784 -31332388 + (TTCC)n Simple_repeat Simple_repeat 3 102 0 3 1292 517 200 0 104 chr9 92743835 92743969 -31332203 - PB1D9 SINE Alu 0 120 1 3 1292 558 0 0 0 chr9 92743975 92744037 -31332135 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 3 1292 285 131 0 0 chr9 92744037 92744098 -31332074 + (CCTG)n Simple_repeat Simple_repeat 4 64 0 3 1292 1297 45 0 37 chr9 92744102 92744289 -31331883 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1292 419 92 15 0 chr9 92744291 92744356 -31331816 + (TTCCC)n Simple_repeat Simple_repeat 1 66 0 3 1292 681 47 0 0 chr9 92744356 92744441 -31331731 + (TTTC)n Simple_repeat Simple_repeat 3 87 0 3 1292 459 120 0 0 chr9 92744441 92744516 -31331656 - BC1_Mm scRNA scRNA -77 75 1 3 1292 246 243 71 0 chr9 92744592 92744662 -31331510 + ORR1E LTR MaLR 294 368 -11 3 1292 2009 230 57 87 chr9 92745182 92745555 -31330617 + RMER19C LTR ERVK 1 380 -231 3 1292 3015 51 28 0 chr9 92745555 92745945 -31330227 - L1Md_F2 LINE L1 -1 6581 6181 3 1292 2009 230 57 87 chr9 92745945 92746166 -31330006 + RMER19C LTR ERVK 381 577 -34 3 1292 1461 141 16 17 chr9 92746596 92747025 -31329147 + RLTR12B LTR ERVK 1 528 0 3 1292 537 306 21 7 chr9 92747327 92747472 -31328700 - RSINE1 SINE B4 -17 148 2 3 1292 1209 261 30 25 chr9 92748093 92748458 -31327714 + ORR1D2 LTR MaLR 1 367 -3 3 1292 663 326 67 27 chr9 92749339 92749922 -31326250 + L1MB8 LINE L1 5567 6172 -6 3 1292 203 299 60 65 chr9 92750582 92750750 -31325422 - L2 LINE L2 -901 2518 2352 3 1292 24 53 0 0 chr9 92751385 92751423 -31324749 + AT_rich Low_complexity Low_complexity 1 38 0 3 1292 3415 205 28 8 chr9 92752569 92753282 -31322890 + Lx4B LINE L1 5910 6636 -422 3 1292 15200 16 1 0 chr9 92753298 92755777 -31320395 - L1Md_T LINE L1 0 6582 4101 3 1292 27 0 0 0 chr9 92756605 92756632 -31319540 + AT_rich Low_complexity Low_complexity 1 27 0 3 1292 614 295 115 87 chr9 92757226 92757720 -31318452 - MER67C LTR ERV1 -195 516 9 3 1292 360 0 0 0 chr9 92757809 92757849 -31318323 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1292 1166 135 26 22 chr9 92758497 92758724 -31317448 - Lx LINE L1 -10 6644 6417 3 1292 201 154 0 0 chr9 92759386 92759425 -31316747 + T-rich Low_complexity Low_complexity 4 42 0 3 1292 1047 111 7 0 chr9 92759429 92759573 -31316599 - B1_Mus1 SINE Alu -2 146 2 3 1292 3249 46 9 16 chr9 92759892 92760316 -31315856 + BGLII LTR ERVK 1 421 0 3 1292 305 271 104 61 chr9 92760421 92760633 -31315539 + SRV_MM-int LTR ERVK 1605 1825 -4342 3 1292 773 142 0 16 chr9 92760656 92760778 -31315394 + RLTR9D LTR ERVK 284 403 0 3 1292 432 0 0 0 chr9 92761489 92761537 -31314635 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 3 1292 180 111 0 0 chr9 92763189 92763216 -31312956 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1292 277 330 34 34 chr9 92763342 92763461 -31312711 + PB1D7 SINE Alu 1 119 -1 3 1292 2998 116 45 0 chr9 92763492 92763958 -31312214 - RLTR1C LTR ERV1 -16 487 1 3 1292 1016 194 63 195 chr9 92764275 92764705 -31311467 + ORR1D1 LTR MaLR 2 374 0 3 1292 1150 68 0 0 chr9 92765092 92765238 -31310934 - B1_Mus1 SINE Alu 0 148 3 3 1292 769 187 52 0 chr9 92765967 92766101 -31310071 + B1_Mur4 SINE Alu 6 146 -4 3 1292 2974 71 8 2 chr9 92766102 92766496 -31309676 - MTA_Mm LTR MaLR 0 396 1 3 1292 192 40 0 0 chr9 92766502 92766527 -31309645 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3 1292 616 316 41 88 chr9 92767220 92767515 -31308657 - B4 SINE B4 -10 282 2 3 1292 4204 178 55 58 chr9 92768956 92769784 -31306388 - RLTR25A LTR ERVK -130 973 137 3 1292 189 0 0 0 chr9 92769784 92769805 -31306367 + (CGAGG)n Simple_repeat Simple_repeat 3 23 0 3 1292 501 17 0 0 chr9 92769805 92769863 -31306309 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 3 1292 4204 178 55 58 chr9 92769863 92770009 -31306163 - RLTR25A LTR ERVK -967 136 2 3 1292 313 357 62 0 chr9 92770229 92770358 -31305814 + MLT1B LTR MaLR 247 383 -7 3 1292 398 136 42 17 chr9 92771321 92771441 -31304731 + (TG)n Simple_repeat Simple_repeat 2 124 0 3 1292 888 185 138 5 chr9 92771887 92772083 -31304089 + URR1A DNA MER1_type 1 222 -4 3 1292 1896 224 24 10 chr9 92774464 92774878 -31301294 - MTC LTR MaLR 0 421 2 3 1292 1310 188 93 12 chr9 92774879 92775213 -31300959 - MTC-int LTR MaLR -1 1257 897 3 1292 441 0 0 0 chr9 92776797 92776846 -31299326 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1292 227 329 51 76 chr9 92777487 92777566 -31298606 - ID_B1 SINE B4 -99 125 49 3 1292 389 340 70 14 chr9 92777782 92777997 -31298175 + Charlie25 DNA MER1_type 254 480 -2044 3 1292 602 308 149 20 chr9 92778017 92778318 -31297854 + Charlie25 DNA MER1_type 515 854 -1670 3 1292 23 54 0 0 chr9 92778917 92778954 -31297218 + AT_rich Low_complexity Low_complexity 1 37 0 3 1292 2071 96 0 16 chr9 92778956 92779263 -31296909 + L1Md_F2 LINE L1 6281 6582 0 3 1292 1385 113 14 9 chr9 92779271 92779486 -31296686 - Lx3B LINE L1 -260 6713 6498 3 1292 3867 109 2 12 chr9 92779473 92780051 -31296121 - Lx3_Mus LINE L1 -136 6873 6302 3 1292 1574 127 56 7 chr9 92780051 92780321 -31295851 + Lx3B LINE L1 6686 6968 -5 3 1292 24 53 0 0 chr9 92780331 92780369 -31295803 + AT_rich Low_complexity Low_complexity 1 38 0 3 1292 2888 103 2 15 chr9 92780640 92781052 -31295120 + MTB_Mm LTR MaLR 1 407 0 3 1292 412 332 89 71 chr9 92781352 92781790 -31294382 - HAL1 LINE L1 -341 2166 1721 4 1292 285 135 0 0 chr9 92781790 92781842 -31294330 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1292 263 93 23 0 chr9 92782305 92782348 -31293824 + (CAT)n Simple_repeat Simple_repeat 2 45 0 4 1292 558 0 0 0 chr9 92782627 92782689 -31293483 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 4 1292 288 70 0 0 chr9 92782742 92782785 -31293387 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1292 234 0 0 0 chr9 92782786 92782812 -31293360 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1292 3054 68 15 5 chr9 92782971 92783367 -31292805 - MTB LTR MaLR 0 400 1 4 1292 27 29 0 0 chr9 92785160 92785194 -31290978 + AT_rich Low_complexity Low_complexity 1 34 0 4 1292 531 160 0 0 chr9 92785202 92785296 -31290876 + GA-rich Low_complexity Low_complexity 3 96 0 4 1292 5269 159 21 2 chr9 92785427 92786316 -31289856 - Lx LINE L1 -4 6650 5745 4 1292 259 270 45 0 chr9 92786398 92786487 -31289685 + Lx9 LINE L1 7310 7402 -242 4 1292 283 287 128 0 chr9 92786670 92786764 -31289408 + PB1D10 SINE Alu 1 106 -11 4 1292 1146 233 58 133 chr9 92786827 92787308 -31288864 + RMER19B LTR ERVK 1 410 -492 4 1292 441 279 133 45 chr9 92787422 92787730 -31288442 + Lx9 LINE L1 7310 7644 0 4 1292 1303 101 11 5 chr9 92788888 92789077 -31287095 - B2_Mm2 SINE B2 -2 193 4 4 1292 1671 141 165 34 chr9 92790066 92790418 -31285754 + RMER10B LTR ERVL 1 398 0 4 1292 27 0 0 0 chr9 92790505 92790532 -31285640 + AT_rich Low_complexity Low_complexity 1 27 0 4 1292 551 181 67 140 chr9 92790532 92790579 -31285593 - Lx4A LINE L1 -1 7057 7011 4 1292 468 0 0 0 chr9 92790579 92790631 -31285541 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1292 551 181 67 140 chr9 92790631 92790776 -31285396 - Lx4A LINE L1 -48 7010 6880 4 1292 398 212 12 0 chr9 92791238 92791318 -31284854 - ORR1D2 LTR MaLR -13 357 277 4 1292 1555 242 61 29 chr9 92791319 92791720 -31284452 - ORR1D2-int LTR MaLR -206 1164 751 4 1292 2058 156 17 115 chr9 92791720 92792191 -31283981 - RLTR23 LTR ERV1 0 430 6 4 1292 1307 237 59 61 chr9 92792196 92792401 -31283771 - ORR1D2-int LTR MaLR -621 749 558 4 1292 1122 75 0 20 chr9 92792401 92792413 -31283759 - B1_Mus1 SINE Alu -1 147 138 4 1292 248 0 31 0 chr9 92792413 92792445 -31283727 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1292 1122 75 0 20 chr9 92792445 92792582 -31283590 - B1_Mus1 SINE Alu -11 137 1 4 1292 1307 237 59 61 chr9 92792582 92792767 -31283405 - ORR1D2-int LTR MaLR -813 557 360 4 1292 832 103 24 0 chr9 92792769 92792895 -31283277 + B2_Mm2 SINE B2 53 181 -14 4 1292 24 0 0 0 chr9 92793103 92793127 -31283045 + AT_rich Low_complexity Low_complexity 1 24 0 4 1292 283 264 46 28 chr9 92793866 92793979 -31282193 + MIR SINE MIR 43 162 -114 4 1292 208 122 49 0 chr9 92794169 92794210 -31281962 + T-rich Low_complexity Low_complexity 3 45 0 4 1292 23 33 0 0 chr9 92794483 92794513 -31281659 + AT_rich Low_complexity Low_complexity 1 30 0 4 1292 22 35 0 0 chr9 92794966 92794995 -31281177 + AT_rich Low_complexity Low_complexity 1 29 0 4 1292 3184 241 49 8 chr9 92795678 92796458 -31279714 + ORR1D-int LTR MaLR 91 1050 -459 4 1292 1608 139 107 7 chr9 92796458 92796747 -31279425 - Lx2 LINE L1 -11 6986 6669 4 1292 258 281 101 8 chr9 92796862 92796991 -31279181 - L1MA10 LINE L1 -15 6319 6179 4 1292 371 237 0 9 chr9 92797000 92797115 -31279057 + (CAT)n Simple_repeat Simple_repeat 3 116 0 4 1292 556 263 6 60 chr9 92797117 92797299 -31278873 + HAL1-2a_MD LINE L1 2345 2516 -508 4 1292 1512 152 109 3 chr9 92797959 92798174 -31277998 - RLTR31B_Mm LTR ERVK -222 335 94 4 1292 378 0 0 0 chr9 92798174 92798216 -31277956 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1292 1512 152 109 3 chr9 92798216 92798303 -31277869 - RLTR31B_Mm LTR ERVK -464 93 2 4 1292 1417 48 5 0 chr9 92798353 92798540 -31277632 + L1Md_F2 LINE L1 6383 6570 -12 4 1292 459 0 0 0 chr9 92798602 92798653 -31277519 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1292 342 0 0 0 chr9 92798653 92798690 -31277482 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1292 291 282 0 0 chr9 92798724 92798799 -31277373 + MLT1B LTR MaLR 3 77 -390 4 1293 243 233 0 0 chr9 92799408 92799468 -31276704 + (CAAA)n Simple_repeat Simple_repeat 3 62 0 4 1293 697 351 35 7 chr9 92800356 92800640 -31275532 + HERVL74-int LTR ERVL 2376 2667 -3018 4 1293 558 301 208 13 chr9 92801077 92801380 -31274792 - ORR1D2 LTR MaLR -4 366 5 4 1293 360 0 0 0 chr9 92802174 92802214 -31273958 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1293 320 237 97 57 chr9 92802871 92803043 -31273129 + ORR1D2 LTR MaLR 1 131 -198 4 1293 227 220 82 35 chr9 92803959 92804044 -31272128 - MLT1J2 LTR MaLR -24 424 336 4 1293 416 317 67 46 chr9 92804703 92804898 -31271274 - MER34 LTR ERV1 -341 201 3 4 1293 1411 269 147 10 chr9 92806322 92806429 -31269743 + MTEa-int LTR MaLR 984 1110 -470 4 1293 432 0 0 0 chr9 92806429 92806477 -31269695 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1293 1411 269 147 10 chr9 92806477 92806873 -31269299 + MTEa-int LTR MaLR 1111 1556 -24 4 1293 1365 262 41 48 chr9 92806880 92807228 -31268944 + MTEa LTR MaLR 1 350 -20 4 1293 1565 199 19 44 chr9 92807456 92807811 -31268361 + RLTR20B3 LTR ERVK 1 300 -277 4 1293 624 250 0 23 chr9 92807754 92807885 -31268287 + B1_Mur1 SINE Alu 22 149 0 4 1293 269 261 22 36 chr9 92807890 92808029 -31268143 + A-rich Low_complexity Low_complexity 3 139 0 4 1293 24 0 0 0 chr9 92808066 92808090 -31268082 + AT_rich Low_complexity Low_complexity 1 24 0 4 1293 352 377 69 55 chr9 92808250 92808525 -31267647 + B4A SINE B4 2 280 -12 4 1293 21 0 0 0 chr9 92808941 92808962 -31267210 + AT_rich Low_complexity Low_complexity 1 21 0 4 1293 1272 202 7 110 chr9 92809356 92809800 -31266372 - ORR1C1 LTR MaLR 0 394 1 4 1293 671 319 35 35 chr9 92810073 92810330 -31265842 + B4A SINE B4 1 257 -35 4 1293 295 54 0 0 chr9 92810378 92810434 -31265738 - L1_Mus4 LINE L1 0 6636 6581 4 1293 391 108 0 10 chr9 92810421 92810494 -31265678 + Lx LINE L1 6186 6241 -413 4 1293 856 149 7 0 chr9 92810618 92810759 -31265413 + ORR1C1 LTR MaLR 172 313 -65 4 1293 324 345 140 28 chr9 92810809 92811095 -31265077 - L1M5 LINE L1 -855 5291 4974 4 1293 1893 151 82 6 chr9 92811616 92811957 -31264215 - ORR1B2 LTR MaLR 0 367 1 4 1293 293 258 65 0 chr9 92812245 92812338 -31263834 - MER5C DNA MER1_type -12 301 203 4 1293 387 0 0 0 chr9 92812343 92812386 -31263786 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1293 22 35 0 0 chr9 92813182 92813211 -31262961 + AT_rich Low_complexity Low_complexity 1 29 0 4 1293 312 48 0 0 chr9 92813609 92813651 -31262521 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 4 1293 447 365 75 0 chr9 92813877 92814091 -31262081 + MLT1B LTR MaLR 1 230 -160 4 1293 529 338 105 78 chr9 92814283 92814634 -31261538 - MLT1E3 LTR MaLR -19 605 184 4 1293 497 80 13 0 chr9 92814634 92814709 -31261463 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1293 486 338 105 78 chr9 92814709 92814871 -31261301 - MLT1E3 LTR MaLR -377 183 15 4 1293 269 368 23 0 chr9 92815056 92815143 -31261029 - PB1D10 SINE Alu -27 90 2 4 1293 1210 248 93 3 chr9 92815230 92815516 -31260656 - MTD LTR MaLR -2 417 106 4 1293 417 232 258 0 chr9 92815516 92815686 -31260486 + B3A SINE B2 2 215 -1 4 1293 189 0 0 0 chr9 92815692 92815713 -31260459 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1293 337 123 0 50 chr9 92815725 92815785 -31260387 + RMER15 LTR ERVL 85 141 -434 4 1293 326 317 48 9 chr9 92815794 92815899 -31260273 - MLT1A1 LTR MaLR -115 293 185 4 1293 278 0 54 0 chr9 92816185 92816222 -31259950 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1293 1054 96 0 0 chr9 92816222 92816358 -31259814 - B1_Mm SINE Alu -9 138 3 4 1293 22 35 0 0 chr9 92816750 92816779 -31259393 + AT_rich Low_complexity Low_complexity 1 29 0 4 1293 1146 256 76 78 chr9 92817299 92817764 -31258408 - MT2B LTR ERVL -65 536 1 4 1293 24 0 0 0 chr9 92818702 92818726 -31257446 + AT_rich Low_complexity Low_complexity 1 24 0 4 1293 921 73 2 0 chr9 92819286 92819423 -31256749 + B1_Mus1 SINE Alu 9 147 -3 4 1293 405 0 0 0 chr9 92819423 92819468 -31256704 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 4 1293 445 289 107 62 chr9 92819471 92819696 -31256476 - MTEa LTR MaLR -144 235 1 4 1293 1071 231 9 5 chr9 92819779 92819992 -31256180 - B3 SINE B2 0 216 3 4 1293 309 261 273 0 chr9 92819997 92820073 -31256099 - L1M3 LINE L1 -1080 5063 4981 4 1293 393 22 0 0 chr9 92820073 92820119 -31256053 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1293 309 261 273 0 chr9 92820119 92820203 -31255969 - L1M3 LINE L1 -1163 4980 4861 4 1293 669 294 41 19 chr9 92820204 92820474 -31255698 - L1M3 LINE L1 -1502 4638 4363 4 1293 1022 295 95 41 chr9 92820485 92821244 -31254928 + L1MA9 LINE L1 5480 6309 -3 4 1293 356 228 104 56 chr9 92821499 92821643 -31254529 - B2_Mm2 SINE B2 -7 188 38 4 1293 4203 186 104 67 chr9 92822009 92822821 -31253351 + RLTR25B LTR ERVK 1 831 -197 4 1293 555 43 0 0 chr9 92822821 92822891 -31253281 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 1293 4203 186 104 67 chr9 92822891 92823069 -31253103 + RLTR25B LTR ERVK 832 1028 0 4 1293 440 264 12 92 chr9 92823271 92823434 -31252738 - MER31B LTR ERV1 0 466 317 4 1293 2085 128 94 82 chr9 92823518 92823994 -31252178 + RLTR45 LTR ERVK 1 482 0 4 1293 333 356 87 24 chr9 92824685 92824938 -31251234 - MER31B LTR ERV1 -164 321 53 4 1293 585 254 33 62 chr9 92826345 92826555 -31249617 + B3 SINE B2 5 208 -8 4 1293 24 53 0 0 chr9 92826555 92826593 -31249579 + AT_rich Low_complexity Low_complexity 1 38 0 4 1293 266 26 53 0 chr9 92826759 92826797 -31249375 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1293 296 185 0 0 chr9 92827121 92827175 -31248997 + MT2A LTR ERVL 6 59 -474 4 1293 714 277 32 21 chr9 92827178 92827366 -31248806 + MTD LTR MaLR 222 411 -8 4 1293 508 301 128 37 chr9 92827692 92827934 -31248238 + RMER20B LTR ERVK 234 497 -130 4 1293 2895 75 146 9 chr9 92828723 92829167 -31247005 - LTRIS4 LTR ERV1 -2 505 1 4 1293 521 134 9 0 chr9 92829393 92829505 -31246667 + (TC)n Simple_repeat Simple_repeat 1 113 0 4 1293 232 307 128 68 chr9 92829708 92829942 -31246230 - MER92B LTR ERV1 -32 604 357 5 1293 582 272 149 55 chr9 92830010 92830474 -31245698 - RMER5 LTR ERV1 -17 517 10 5 1293 622 284 91 19 chr9 92830515 92830723 -31245449 - MER92B LTR ERV1 -412 224 2 5 1293 363 154 0 58 chr9 92830769 92830838 -31245334 - IAPEY2_LTR LTR ERVK -292 65 1 5 1293 2377 312 115 46 chr9 92831565 92833018 -31243154 + Charlie6 DNA MER1_type 649 2201 -1299 5 1293 416 314 7 7 chr9 92833051 92833192 -31242980 + B1F2 SINE Alu 9 149 0 5 1293 540 0 0 0 chr9 92833282 92833342 -31242830 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1293 404 264 276 4 chr9 92833376 92833619 -31242553 + Charlie6 DNA MER1_type 2358 2666 -834 5 1293 897 292 161 6 chr9 92833715 92834056 -31242116 - MTD LTR MaLR -4 415 22 5 1293 1310 261 185 58 chr9 92834066 92834933 -31241239 - MTD-int LTR MaLR 0 1580 725 5 1293 456 340 47 0 chr9 92835007 92835157 -31241015 + MER2 DNA MER2_type 175 331 -14 5 1293 687 12 0 0 chr9 92835192 92835272 -31240900 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1293 279 294 86 63 chr9 92835329 92835545 -31240627 + Charlie6 DNA MER1_type 2878 3101 -399 5 1293 1502 54 0 11 chr9 92835545 92835732 -31240440 + B2_Mm1a SINE B2 1 185 -8 5 1293 279 294 86 63 chr9 92835732 92835784 -31240388 + Charlie6 DNA MER1_type 3102 3152 -348 5 1293 289 297 77 15 chr9 92836148 92836278 -31239894 + Charlie6 DNA MER1_type 3236 3373 -127 5 1293 350 323 71 35 chr9 92836415 92836585 -31239587 + MLT1G1 LTR MaLR 124 299 -280 5 1293 1202 267 106 75 chr9 92836633 92837115 -31239057 + RLTR18B LTR ERVK 14 510 -2 5 1293 450 79 0 0 chr9 92837249 92837312 -31238860 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1293 315 341 101 0 chr9 92837572 92837701 -31238471 + MLT1G1 LTR MaLR 161 302 -277 5 1293 541 267 122 11 chr9 92839216 92839405 -31236767 - Lx6 LINE L1 -26 7434 7225 5 1293 2973 187 64 19 chr9 92839917 92840618 -31235554 + L1Md_F LINE L1 503 1235 -6477 5 1293 183 360 18 18 chr9 92841847 92841960 -31234212 - MIR SINE MIR -134 128 16 5 1293 406 284 26 7 chr9 92842800 92842969 -31233203 - L1MA5A LINE L1 -423 5880 5710 5 1293 1554 38 0 11 chr9 92844057 92844243 -31231929 + B2_Mm1a SINE B2 1 184 -9 5 1293 315 0 0 0 chr9 92844442 92844477 -31231695 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1293 506 287 106 19 chr9 92844512 92844935 -31231237 + L1_Mur2 LINE L1 2521 2980 -2897 5 1293 262 356 0 0 chr9 92845050 92845140 -31231032 - MER70B LTR ERVL -180 398 309 5 1293 2414 182 42 34 chr9 92846108 92846603 -31229569 + RLTR28 LTR ERVL 1 499 -25 5 1293 7943 46 6 2 chr9 92846944 92848073 -31228099 - L1Md_F2 LINE L1 -12 6570 5435 5 1293 731 229 7 0 chr9 92848335 92848475 -31227697 - B1_Mus2 SINE Alu 0 147 7 5 1293 603 304 119 4 chr9 92848477 92848721 -31227451 - MER90a LTR ERV1 -236 378 107 5 1293 1097 138 40 0 chr9 92851550 92851724 -31224448 - B2_Mm2 SINE B2 -13 182 2 5 1293 22 35 0 0 chr9 92851730 92851759 -31224413 + AT_rich Low_complexity Low_complexity 1 29 0 5 1293 180 0 0 0 chr9 92852141 92852161 -31224011 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1293 187 262 0 0 chr9 92852439 92852481 -31223691 - MIR SINE MIR -111 151 110 5 1293 225 0 0 0 chr9 92853464 92853489 -31222683 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1293 212 0 0 35 chr9 92854413 92854442 -31221730 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1293 916 347 64 36 chr9 92854749 92855218 -31220954 - MER21B LTR ERV1 -316 547 66 5 1293 28 61 0 0 chr9 92857380 92857429 -31218743 + AT_rich Low_complexity Low_complexity 1 49 0 5 1293 2076 136 37 145 chr9 92857481 92857963 -31218209 + RLTR23 LTR ERV1 1 430 0 5 1293 2139 261 59 10 chr9 92858114 92858694 -31217478 - Lx7 LINE L1 -369 7327 6720 5 1293 1668 298 23 36 chr9 92858686 92859288 -31216884 + Lx7 LINE L1 5850 6443 -1253 5 1293 184 268 71 0 chr9 92859534 92859590 -31216582 - MER5B DNA MER1_type -77 101 42 5 1293 180 111 0 0 chr9 92859596 92859623 -31216549 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1293 23 78 0 0 chr9 92859827 92859878 -31216294 + AT_rich Low_complexity Low_complexity 1 51 0 5 1293 23 33 0 0 chr9 92859912 92859942 -31216230 + AT_rich Low_complexity Low_complexity 1 30 0 5 1293 557 215 180 67 chr9 92859999 92860193 -31215979 + B3 SINE B2 1 216 0 5 1293 316 138 0 94 chr9 92860205 92860269 -31215903 - HAL1-3A_ME LINE L1 -826 2032 1975 5 1293 823 226 79 20 chr9 92860858 92861061 -31215111 + B3 SINE B2 2 216 0 5 1293 219 353 38 29 chr9 92861178 92861193 -31214979 - PB1 SINE Alu -19 108 74 5 1293 241 310 180 0 chr9 92861193 92861213 -31214959 - ID_B1 SINE B4 -33 191 171 5 1293 1223 129 0 25 chr9 92861213 92861412 -31214760 - B2_Mm2 SINE B2 0 195 2 5 1293 219 353 38 29 chr9 92861412 92861481 -31214691 - PB1 SINE Alu -54 73 3 5 1293 1504 67 0 20 chr9 92861540 92861739 -31214433 + B2_Mm2 SINE B2 1 195 0 5 1293 1035 102 7 0 chr9 92862054 92862201 -31213971 + B1_Mus1 SINE Alu 1 148 0 5 1293 219 36 0 0 chr9 92862233 92862261 -31213911 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 5 1293 258 32 0 0 chr9 92862264 92862295 -31213877 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1293 281 287 104 21 chr9 92862325 92862421 -31213751 + RLTR14 LTR ERV1 279 382 0 5 1293 214 302 63 0 chr9 92862560 92862623 -31213549 + RSINE1 SINE B4 93 159 -6 5 1293 396 0 0 0 chr9 92864573 92864617 -31211555 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1293 198 0 0 0 chr9 92865479 92865501 -31210671 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1293 1310 251 45 92 chr9 92865962 92866387 -31209785 - MTD LTR MaLR -14 405 1 5 1293 752 254 92 15 chr9 92866937 92867197 -31208975 - B4 SINE B4 -10 282 3 5 1293 32 0 0 0 chr9 92868444 92868476 -31207696 + AT_rich Low_complexity Low_complexity 1 32 0 5 1293 420 330 93 56 chr9 92869636 92869785 -31206387 - Charlie7 DNA MER1_type -2115 497 352 5 1293 356 59 20 0 chr9 92869785 92869836 -31206336 + (TATG)n Simple_repeat Simple_repeat 3 54 0 5 1293 420 330 93 56 chr9 92869836 92870061 -31206111 - Charlie7 DNA MER1_type -2261 351 109 5 1293 242 320 8 23 chr9 92870384 92870443 -31205729 + polypyrimidine Low_complexity Low_complexity 71 128 0 5 1293 824 68 20 7 chr9 92870443 92870590 -31205582 + (TCTA)n Simple_repeat Simple_repeat 4 152 0 5 1293 242 320 8 23 chr9 92870590 92870658 -31205514 + polypyrimidine Low_complexity Low_complexity 3 70 0 5 1293 326 382 83 18 chr9 92870716 92870945 -31205227 + MLT1G1 LTR MaLR 336 579 0 5 1293 296 271 66 25 chr9 92872451 92872572 -31203600 - L1MC2 LINE L1 -13 6331 6206 5 1293 898 254 83 102 chr9 92873664 92874194 -31201978 - RMER15-int LTR ERVL -15 4984 4465 5 1293 1098 284 44 73 chr9 92874368 92874751 -31201421 - MTEb LTR MaLR -5 374 3 5 1293 3424 126 21 13 chr9 92875121 92875678 -31200494 + LTRIS2 LTR ERV1 3 564 0 5 1293 1379 233 96 25 chr9 92876158 92876184 -31199988 + BGLII_B LTR ERVK 1 26 -415 5 1293 5543 94 23 27 chr9 92876184 92876995 -31199177 + RLTR13C2 LTR ERVK 1 808 0 5 1293 1379 233 96 25 chr9 92876995 92877364 -31198808 + BGLII_B LTR ERVK 27 424 -17 5 1293 477 320 73 35 chr9 92878044 92878303 -31197869 - RMER15-int LTR ERVL -4203 796 528 5 1293 449 222 71 36 chr9 92878780 92878920 -31197252 - RMER15 LTR ERVL -95 480 336 5 1293 308 155 52 0 chr9 92879091 92879148 -31197024 + MTD LTR MaLR 1 60 -359 5 1293 2234 164 45 16 chr9 92879148 92879588 -31196584 + RMER20B LTR ERVK 1 453 -174 5 1293 427 200 103 21 chr9 92879609 92879706 -31196466 + RMER20B LTR ERVK 523 627 0 5 1293 1325 231 90 35 chr9 92879706 92879789 -31196383 + MTD LTR MaLR 55 137 -282 5 1293 1090 88 0 39 chr9 92879789 92879942 -31196230 + B1_Mm SINE Alu 1 147 0 5 1293 1325 231 90 35 chr9 92879942 92880204 -31195968 + MTD LTR MaLR 138 419 0 5 1293 268 163 11 23 chr9 92882404 92882492 -31193680 - Lx9 LINE L1 -100 7544 7458 5 1293 345 197 0 0 chr9 92882515 92882591 -31193581 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1293 2633 172 35 54 chr9 92882615 92883136 -31193036 - RMER20A LTR ERVK 0 516 6 5 1293 342 0 0 0 chr9 92883136 92883174 -31192998 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1293 2797 160 13 60 chr9 92883175 92883638 -31192534 + RLTR11A2 LTR ERVK 1 455 -72 5 1293 1022 72 36 0 chr9 92883638 92883776 -31192396 - B1_Mus1 SINE Alu -1 147 5 5 1293 2797 160 13 60 chr9 92883776 92883865 -31192307 + RLTR11A2 LTR ERVK 456 527 0 5 1293 1117 311 55 16 chr9 92883865 92884303 -31191869 + Lx8 LINE L1 6210 6664 -809 5 1293 236 280 27 27 chr9 92884451 92884561 -31191611 + L1MA10 LINE L1 6211 6320 -14 5 1293 566 331 102 17 chr9 92884586 92884930 -31191242 + Lx8 LINE L1 7096 7468 -5 5 1293 2061 227 102 60 chr9 92884993 92885579 -31190593 - RMER1B Other Other -6 1060 450 5 1293 600 147 66 21 chr9 92885579 92885717 -31190455 + RMER19B LTR ERVK 1 179 -558 5 1293 694 163 34 0 chr9 92885718 92885854 -31190318 + RMER19B LTR ERVK 55 180 -557 5 1293 240 343 133 40 chr9 92887889 92887943 -31188229 + Lx8 LINE L1 7225 7279 -194 5 1293 3390 91 85 21 chr9 92887943 92888473 -31187699 - LTRIS2 LTR ERV1 0 564 1 5 1293 270 0 0 0 chr9 92888527 92888557 -31187615 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1293 421 363 69 35 chr9 92888976 92889029 -31187143 + ORR1E LTR MaLR 4 57 -302 5 1293 6931 95 37 4 chr9 92889029 92890029 -31186143 + RLTR13D4 LTR ERVK 1 1033 0 5 1293 421 363 69 35 chr9 92890029 92890292 -31185880 + ORR1E LTR MaLR 58 331 -28 5 1293 212 303 0 15 chr9 92890508 92890575 -31185597 + GA-rich Low_complexity Low_complexity 1 66 0 5 1293 299 45 0 22 chr9 92890978 92891024 -31185148 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1293 519 334 52 25 chr9 92891725 92892028 -31184144 - L1MA6 LINE L1 -169 6131 5813 5 1293 200 31 62 0 chr9 92892028 92892060 -31184112 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1293 519 334 52 25 chr9 92892060 92892161 -31184011 - L1MA6 LINE L1 -488 5812 5716 5 1293 844 263 86 22 chr9 92892662 92893217 -31182955 - L1MA6 LINE L1 -577 5723 5123 5 1293 2227 111 12 3 chr9 92893942 92894266 -31181906 + ORR1A2 LTR MaLR 1 327 0 5 1293 1163 61 0 26 chr9 92894358 92894369 -31181803 - B1_Mus1 SINE Alu -1 147 140 5 1293 459 0 0 0 chr9 92894369 92894420 -31181752 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1293 1163 61 0 26 chr9 92894420 92894559 -31181613 - B1_Mus1 SINE Alu -9 139 1 5 1293 1085 58 0 0 chr9 92894625 92894762 -31181410 + B1_Mm SINE Alu 11 147 0 5 1293 414 105 0 40 chr9 92894773 92894872 -31181300 + (CAAA)n Simple_repeat Simple_repeat 2 96 0 5 1293 2720 52 0 0 chr9 92895329 92895659 -31180513 - L1_Mus1 LINE L1 0 6567 6238 5 1293 1610 239 61 5 chr9 92896046 92896441 -31179731 + MTD LTR MaLR 1 417 -2 5 1293 2325 111 84 8 chr9 92896526 92896918 -31179254 - BGLII_Mus LTR ERVK 0 422 1 6 1293 1194 172 33 138 chr9 92899674 92900042 -31176130 - RMER17C LTR ERVK 0 410 91 6 1293 696 24 0 0 chr9 92900042 92900124 -31176048 + (GA)n Simple_repeat Simple_repeat 2 83 0 6 1293 1194 172 33 138 chr9 92900124 92900213 -31175959 - RMER17C LTR ERVK -320 90 1 6 1293 823 274 76 70 chr9 92901033 92901362 -31174810 - RMER13A LTR ERVK -428 432 102 6 1293 472 288 79 25 chr9 92902500 92902703 -31173469 + RMER15 LTR ERVL 362 575 0 6 1293 180 0 0 0 chr9 92904169 92904189 -31171983 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6 1293 432 0 0 0 chr9 92904190 92904238 -31171934 + (TTA)n Simple_repeat Simple_repeat 2 49 0 6 1293 962 88 66 0 chr9 92904238 92904375 -31171797 - B1_Mus1 SINE Alu -2 146 1 6 1293 225 65 0 0 chr9 92904418 92904449 -31171723 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1293 40 87 0 0 chr9 92904516 92904619 -31171553 + AT_rich Low_complexity Low_complexity 1 103 0 6 1293 307 333 81 0 chr9 92904733 92904844 -31171328 - MLT1A1 LTR MaLR -54 354 235 6 1293 443 184 32 15 chr9 92904968 92905072 -31171100 - B1_Mus2 SINE Alu -12 135 2 6 1293 2007 291 37 11 chr9 92905860 92906430 -31169742 + MTE-int LTR MaLR 6 590 -990 6 1293 839 189 7 0 chr9 92906434 92906577 -31169595 + RMER21B LTR ERV1 699 842 0 6 1293 369 0 0 0 chr9 92907743 92907784 -31168388 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1293 469 379 65 25 chr9 92907804 92908129 -31168043 - RMER15 LTR ERVL -19 556 219 6 1293 36537 59 1 4 chr9 92908140 92916134 -31160038 - L1Md_T LINE L1 0 6585 1 6 1293 1424 319 24 9 chr9 92916566 92917120 -31159052 + Lx8 LINE L1 6766 7327 -146 6 1293 1038 67 0 15 chr9 92917122 92917259 -31158913 + B1_Mus1 SINE Alu 14 148 0 6 1293 325 302 91 23 chr9 92917322 92917454 -31158718 + L1MDa LINE L1 1386 1526 -5107 6 1293 370 265 50 25 chr9 92917462 92917582 -31158590 + RMER12 LTR ERVK 1096 1218 -104 6 1293 683 0 0 24 chr9 92917915 92917999 -31158173 + (TATATG)n Simple_repeat Simple_repeat 4 85 0 6 1293 558 282 85 102 chr9 92918195 92918618 -31157554 + L1MDa LINE L1 3150 3565 -2969 6 1293 660 314 43 19 chr9 92918648 92918859 -31157313 + B3A SINE B2 1 216 0 6 1293 247 288 40 35 chr9 92918937 92919110 -31157062 - L1M3 LINE L1 -922 5218 5045 6 1293 2692 115 6 52 chr9 92919573 92919735 -31156437 - L1Md_Gf LINE L1 -5380 1142 996 6 1293 1635 35 0 5 chr9 92919735 92919938 -31156234 - L1Md_F3 LINE L1 -15 6569 6368 6 1293 2692 115 6 52 chr9 92919938 92920279 -31155893 - L1Md_Gf LINE L1 -5527 995 662 6 1293 11656 81 2 11 chr9 92920284 92921978 -31154194 + L1Md_F2 LINE L1 3908 5586 -297 6 1293 7555 73 1 3 chr9 92921979 92922961 -31153211 + L1Md_F2 LINE L1 5588 6567 -15 6 1293 21 71 0 0 chr9 92923803 92923845 -31152327 + AT_rich Low_complexity Low_complexity 1 42 0 6 161 39409 5 0 0 chr9 92923860 92930182 -31145990 - L1Md_A LINE L1 0 6582 260 6 1294 25 0 0 0 chr9 92931338 92931363 -31144809 + AT_rich Low_complexity Low_complexity 1 25 0 6 1294 333 0 0 0 chr9 92931442 92931479 -31144693 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1294 423 333 9 0 chr9 92931493 92931604 -31144568 - RSINE1 SINE B4 -25 140 29 6 1294 21 36 0 0 chr9 92934261 92934289 -31141883 + AT_rich Low_complexity Low_complexity 1 28 0 6 1294 482 318 58 90 chr9 92934858 92935135 -31141037 + MLT1B LTR MaLR 123 390 0 6 1294 468 301 116 20 chr9 92935141 92935433 -31140739 - L1MC1 LINE L1 0 6333 6014 6 1294 1120 82 0 0 chr9 92935479 92935626 -31140546 - B1_Mus1 SINE Alu 0 148 2 6 1294 278 315 62 37 chr9 92935633 92935956 -31140216 - L1MC1 LINE L1 -319 6025 5695 6 1294 999 327 63 17 chr9 92935984 92936625 -31139547 + MTE-int LTR MaLR 634 1375 -205 6 1294 374 216 23 0 chr9 92936626 92936714 -31139458 + MTE2a LTR MaLR 281 370 -9 6 1294 31 0 0 0 chr9 92937265 92937296 -31138876 + AT_rich Low_complexity Low_complexity 1 31 0 6 1294 21 0 0 0 chr9 92937633 92937654 -31138518 + AT_rich Low_complexity Low_complexity 1 21 0 6 1294 706 295 156 6 chr9 92937690 92938017 -31138155 + Lx8 LINE L1 6967 7342 -131 6 1294 1018 121 0 20 chr9 92938244 92938396 -31137776 + B1_Mur4 SINE Alu 1 149 -1 6 1294 592 239 0 133 chr9 92938703 92938891 -31137281 + RSINE1 SINE B4 3 165 0 6 1294 1625 189 100 124 chr9 92940892 92941423 -31134749 - RLTR11A2 LTR ERVK -2 525 8 6 1294 401 21 0 0 chr9 92941724 92941771 -31134401 - L1Md_T LINE L1 -367 6215 6169 6 1294 2955 47 0 0 chr9 92941771 92942131 -31134041 + L1Md_T LINE L1 6223 6582 0 6 1294 21 36 0 0 chr9 92942366 92942394 -31133778 + AT_rich Low_complexity Low_complexity 1 28 0 6 1294 328 271 64 7 chr9 92942429 92942570 -31133602 - Lx9 LINE L1 -431 7213 7065 6 1294 704 190 24 35 chr9 92942575 92942744 -31133428 + Lx4B LINE L1 6857 7023 -35 6 1294 201 74 0 0 chr9 92942762 92942789 -31133383 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 6 1294 1327 187 4 39 chr9 92942789 92943060 -31133112 + RMER6B LTR ERVK 200 461 0 6 1294 1577 164 7 0 chr9 92943062 92943343 -31132829 - Lx5 LINE L1 -461 6589 6307 6 1294 1766 231 53 42 chr9 92943347 92943799 -31132373 + Lx5 LINE L1 6575 7031 -19 6 1294 249 108 0 0 chr9 92943799 92943836 -31132336 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 6 1294 23 68 0 0 chr9 92943854 92943898 -31132274 + AT_rich Low_complexity Low_complexity 1 44 0 6 1294 886 252 67 5 chr9 92943927 92944150 -31132022 - Lx8 LINE L1 -559 6914 6678 6 1294 2738 84 2 27 chr9 92944231 92944481 -31131691 - MTA_Mm LTR MaLR 0 396 154 6 1294 2409 89 81 10 chr9 92944481 92944865 -31131307 - IAPLTR2a LTR ERVK 0 411 1 6 1294 2738 84 2 27 chr9 92944865 92945020 -31131152 - MTA_Mm LTR MaLR -243 153 1 6 1294 232 200 17 0 chr9 92945198 92945258 -31130914 + T-rich Low_complexity Low_complexity 4 64 0 6 1294 21 36 0 0 chr9 92946374 92946402 -31129770 + AT_rich Low_complexity Low_complexity 1 28 0 6 1294 407 255 143 0 chr9 92946482 92946580 -31129592 - B1_Mur1 SINE Alu -17 132 21 6 1294 2163 158 34 29 chr9 92946638 92947080 -31129092 + RMER17A2 LTR ERVK 1 444 -462 6 1294 528 16 0 0 chr9 92947080 92947141 -31129031 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 1294 1467 247 106 78 chr9 92947141 92947439 -31128733 + RMER17A2 LTR ERVK 453 747 -4 6 1294 496 242 53 58 chr9 92947650 92947856 -31128316 - Lx8 LINE L1 -6409 1199 995 6 1294 503 247 56 74 chr9 92947872 92948034 -31128138 + Lx9 LINE L1 7015 7173 -471 6 1294 26 0 0 0 chr9 92948164 92948190 -31127982 + AT_rich Low_complexity Low_complexity 1 26 0 6 1294 3901 132 49 6 chr9 92948200 92948831 -31127341 + Lx3C LINE L1 6317 6974 -2 6 1294 348 161 0 0 chr9 92949005 92949067 -31127105 + CT-rich Low_complexity Low_complexity 4 65 0 6 1294 2674 62 6 6 chr9 92949919 92950274 -31125898 + L1Md_F2 LINE L1 6216 6570 -12 6 1294 3988 107 10 5 chr9 92950294 92950884 -31125288 - L1_Mus4 LINE L1 -7 6629 6037 6 1294 21 0 0 0 chr9 92951733 92951754 -31124418 + AT_rich Low_complexity Low_complexity 1 21 0 6 1294 741 12 0 0 chr9 92952032 92952118 -31124054 + (CA)n Simple_repeat Simple_repeat 2 87 0 6 1294 563 294 7 7 chr9 92952177 92952331 -31123841 + RSINE1 SINE B4 2 155 -10 6 1294 224 204 0 0 chr9 92953067 92953098 -31123074 + T-rich Low_complexity Low_complexity 23 53 0 6 1294 1014 129 0 0 chr9 92953098 92953261 -31122911 + (TTTCC)n Simple_repeat Simple_repeat 3 165 0 6 1294 224 204 0 0 chr9 92953261 92953278 -31122894 + T-rich Low_complexity Low_complexity 6 22 0 6 1294 268 294 64 21 chr9 92953739 92953869 -31122303 + B1F SINE Alu 1 135 -14 6 1294 30217 126 37 21 chr9 92953869 92955191 -31120981 + L1Md_F2 LINE L1 202 1564 -4319 6 1294 2428 48 0 6 chr9 92955191 92955502 -31120670 + L1Md_F3 LINE L1 6276 6584 0 6 1294 30217 88 5 28 chr9 92955502 92959634 -31116538 + L1Md_F2 LINE L1 1565 5584 -299 6 1294 7444 73 14 3 chr9 92959636 92960619 -31115553 + L1Md_F2 LINE L1 5587 6580 -2 6 1294 315 0 0 0 chr9 92960693 92960728 -31115444 + (TC)n Simple_repeat Simple_repeat 1 35 0 6 1294 301 55 55 18 chr9 92961826 92961881 -31114291 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 6 1294 393 22 0 0 chr9 92961921 92961967 -31114205 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1294 698 332 40 4 chr9 92962009 92962281 -31113891 - B4A SINE B4 -6 286 5 6 1294 363 308 6 107 chr9 92962329 92962507 -31113665 - RSINE1 SINE B4 -3 162 3 6 1294 323 303 42 61 chr9 92963576 92963790 -31112382 + L1M3 LINE L1 3427 3636 -2504 6 1294 326 217 87 0 chr9 92963813 92963882 -31112290 + PB1D7 SINE Alu 17 91 -29 6 1294 3137 126 35 14 chr9 92963901 92964418 -31111754 - Lx4A LINE L1 -686 6372 5845 6 1294 425 246 127 21 chr9 92964444 92964652 -31111520 + MTC-int LTR MaLR 1066 1254 -4 6 1294 342 61 0 0 chr9 92964731 92964780 -31111392 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 6 1294 883 221 16 5 chr9 92964784 92964975 -31111197 + Lx4A LINE L1 6863 7055 -3 6 1294 21 0 0 0 chr9 92964980 92965001 -31111171 + AT_rich Low_complexity Low_complexity 1 21 0 6 1294 232 260 41 0 chr9 92965131 92965204 -31110968 + GA-rich Low_complexity Low_complexity 2 77 0 6 1294 738 292 76 7 chr9 92965205 92965680 -31110492 + L1M3 LINE L1 3683 4193 -1947 6 1294 25 51 0 0 chr9 92965776 92965815 -31110357 + AT_rich Low_complexity Low_complexity 1 39 0 6 1294 1988 156 135 0 chr9 92965850 92966242 -31109930 + BGLII_A LTR ERVK 1 445 0 6 1294 448 324 28 14 chr9 92966244 92966388 -31109784 - RSINE1 SINE B4 -14 151 6 6 1294 253 248 29 52 chr9 92966405 92966541 -31109631 + L1M3 LINE L1 4281 4413 -1730 6 1294 466 197 234 28 chr9 92966552 92966766 -31109406 - ORR1A4-int LTR MaLR -22 1236 979 6 1294 1506 137 0 0 chr9 92968006 92968240 -31107932 - ORR1A4-int LTR MaLR -1729 234 1 6 1294 580 174 147 7 chr9 92968240 92968340 -31107832 - ORR1A4 LTR MaLR 0 394 274 6 1294 3270 181 38 16 chr9 92968340 92968968 -31107204 + RLTR26 LTR ERVK 1 642 0 6 1294 1113 169 25 84 chr9 92968968 92969200 -31106972 - ORR1A4 LTR MaLR -111 218 1 6 1294 344 22 0 22 chr9 92969322 92969368 -31106804 + (TAA)n Simple_repeat Simple_repeat 3 47 0 6 1294 240 35 0 0 chr9 92969905 92969934 -31106238 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 1294 23 0 0 0 chr9 92970805 92970828 -31105344 + AT_rich Low_complexity Low_complexity 1 23 0 6 1294 200 453 57 7 chr9 92971294 92971434 -31104738 + MER91A DNA Tip100 15 161 -35 6 1294 21 57 0 0 chr9 92971450 92971485 -31104687 + AT_rich Low_complexity Low_complexity 1 35 0 6 1294 325 0 0 43 chr9 92972196 92972243 -31103929 + (TAAAA)n Simple_repeat Simple_repeat 3 47 0 6 1294 300 53 0 0 chr9 92972279 92972317 -31103855 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1294 226 288 36 57 chr9 92972901 92973041 -31103131 - L1M5 LINE L1 -733 5507 5371 7 1294 1130 62 7 0 chr9 92973855 92974001 -31102171 + B1_Mm SINE Alu 1 147 0 7 1294 234 0 0 0 chr9 92974003 92974029 -31102143 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1294 451 107 24 0 chr9 92974954 92975038 -31101134 + (TCC)n Simple_repeat Simple_repeat 3 88 0 7 1294 2214 169 92 8 chr9 92975240 92975716 -31100456 - RMER20A LTR ERVK 0 516 1 7 1294 336 333 0 40 chr9 92976824 92976924 -31099248 + B3 SINE B2 1 96 -120 7 1294 238 244 170 59 chr9 92977026 92977161 -31099011 + Zaphod2 DNA Tip100 56 205 -3319 7 1294 1015 287 192 12 chr9 92977581 92978075 -31098097 - Lx8 LINE L1 0 7473 6891 7 1294 648 111 0 0 chr9 92978942 92979041 -31097131 + (TC)n Simple_repeat Simple_repeat 2 100 0 7 1294 381 301 100 63 chr9 92979349 92979650 -31096522 - L1MEc LINE L1 -6033 367 56 7 1294 516 184 0 0 chr9 92979979 92980066 -31096106 + L1_Mur3 LINE L1 5418 5504 -376 7 1294 1201 229 44 19 chr9 92980066 92980386 -31095786 + Lx7 LINE L1 7020 7347 -349 7 1294 222 37 0 0 chr9 92980428 92980455 -31095717 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1294 782 214 149 76 chr9 92980477 92980634 -31095538 + Lx7 LINE L1 7344 7493 -203 7 1294 234 0 0 0 chr9 92980634 92980660 -31095512 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1294 782 214 149 76 chr9 92980660 92980679 -31095493 + Lx7 LINE L1 7494 7512 -184 7 1294 414 0 0 0 chr9 92980679 92980725 -31095447 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 7 1294 782 214 149 76 chr9 92980725 92980876 -31095296 + Lx7 LINE L1 7513 7694 -2 7 1294 258 105 0 0 chr9 92982075 92982113 -31094059 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7 1294 353 368 20 34 chr9 92983037 92983186 -31092986 + RSINE1 SINE B4 19 165 0 7 1294 22 35 0 0 chr9 92983216 92983245 -31092927 + AT_rich Low_complexity Low_complexity 1 29 0 7 1294 198 0 0 0 chr9 92983784 92983806 -31092366 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1294 312 273 34 0 chr9 92983909 92983997 -31092175 - Lx8 LINE L1 -133 7340 7250 7 1294 330 359 93 8 chr9 92984060 92984318 -31091854 + L1MD LINE L1 3173 3452 -2694 7 1294 1088 75 0 0 chr9 92984319 92984466 -31091706 + B1_Mus1 SINE Alu 2 148 0 7 1294 205 75 27 82 chr9 92984466 92984539 -31091633 + A-rich Low_complexity Low_complexity 2 70 0 7 1294 209 158 33 50 chr9 92984567 92984627 -31091545 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 7 1294 1287 253 78 35 chr9 92985338 92985916 -31090256 + Lx9 LINE L1 2519 3121 -2726 7 1294 2453 271 80 57 chr9 92985888 92987294 -31088878 + Lx9 LINE L1 4548 6029 -1615 7 1294 451 264 0 19 chr9 92987328 92987436 -31088736 + Lx9 LINE L1 6419 6524 -1120 7 1294 541 333 69 20 chr9 92987518 92987925 -31088247 + L1MA4 LINE L1 4780 5206 -937 7 1294 638 318 6 0 chr9 92987959 92988135 -31088037 + MTEb LTR MaLR 1 177 -202 7 1294 3233 325 72 33 chr9 92988195 92989708 -31086464 + MTEb-int LTR MaLR 1 1572 -8 7 1294 779 266 60 5 chr9 92989716 92989931 -31086241 + MTEb LTR MaLR 1 227 -152 7 1294 484 280 146 59 chr9 92990500 92991108 -31085064 + L1MA4 LINE L1 5339 6006 -294 7 1294 1305 237 94 6 chr9 92991116 92991456 -31084716 + ORR1D2 LTR MaLR 1 370 0 7 1294 1254 170 16 28 chr9 92991640 92991894 -31084278 + RMER1C Other Other 1091 1341 -1 7 1294 22 35 0 0 chr9 92992194 92992223 -31083949 + AT_rich Low_complexity Low_complexity 1 29 0 7 1294 401 202 81 23 chr9 92992570 92992656 -31083516 + PB1D7 SINE Alu 3 93 -27 7 1294 369 0 0 0 chr9 92993849 92993890 -31082282 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1294 396 0 0 0 chr9 92993890 92993933 -31082239 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1294 307 305 83 28 chr9 92995204 92995312 -31080860 - PB1D10 SINE Alu 0 117 4 7 1294 1993 196 44 10 chr9 92995421 92995828 -31080344 + MTC LTR MaLR 1 421 0 7 1294 343 349 46 15 chr9 92997491 92997622 -31078550 - RSINE1 SINE B4 -25 140 6 7 1294 23 54 0 0 chr9 92997635 92997672 -31078500 + AT_rich Low_complexity Low_complexity 1 37 0 7 1294 281 267 0 0 chr9 92998359 92998419 -31077753 + PB1D10 SINE Alu 58 117 0 7 1294 3061 45 3 0 chr9 92998501 92998877 -31077295 - L1_Mus1 LINE L1 -535 6032 5656 7 1294 3959 67 2 0 chr9 92998877 92999373 -31076799 + L1_Mus1 LINE L1 6069 6565 -2 7 1294 31 58 0 0 chr9 92999709 92999761 -31076411 + AT_rich Low_complexity Low_complexity 1 52 0 7 1294 23 0 0 0 chr9 92999817 92999840 -31076332 + AT_rich Low_complexity Low_complexity 1 23 0 7 1294 22 0 0 0 chr9 93000344 93000366 -31075806 + AT_rich Low_complexity Low_complexity 1 22 0 1 1294 250 297 80 13 chr9 93001266 93001336 -31074836 + ID4_ SINE ID 4 79 -4 2 1294 263 122 20 0 chr9 93001336 93001385 -31074787 + (ATG)n Simple_repeat Simple_repeat 2 51 0 3 1294 315 0 0 0 chr9 93001942 93001977 -31074195 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1294 501 324 42 36 chr9 93002547 93002739 -31073433 + B4A SINE B4 99 291 -1 5 1294 285 248 126 38 chr9 93003012 93003171 -31073001 - L1MA5 LINE L1 -372 5928 5756 6 1294 310 93 18 53 chr9 93003308 93003365 -31072807 - L1M2 LINE L1 -869 5274 5220 7 1294 1101 196 24 81 chr9 93003361 93003656 -31072516 + Lx7 LINE L1 7386 7663 -33 8 1294 275 161 0 18 chr9 93006495 93006552 -31069620 + CT-rich Low_complexity Low_complexity 3 58 0 9 1294 632 277 68 15 chr9 93006965 93007170 -31069002 + B3 SINE B2 1 216 0 1 1294 441 317 109 36 chr9 93007564 93008003 -31068169 - L1MA4 LINE L1 -153 6849 6379 1 1294 22 35 0 0 chr9 93008029 93008058 -31068114 + AT_rich Low_complexity Low_complexity 1 29 0 1 1294 439 335 39 11 chr9 93008160 93008519 -31067653 - L1MA4 LINE L1 -2128 4717 4349 1 1294 1928 181 77 21 chr9 93008590 93009019 -31067153 - RMER1C Other Other -2 1340 888 1 1294 352 292 82 53 chr9 93009085 93009291 -31066881 - L1MA4 LINE L1 -3958 2892 2681 1 1294 288 120 0 0 chr9 93009332 93009382 -31066790 + (CAAT)n Simple_repeat Simple_repeat 4 53 0 1 1294 21 57 0 0 chr9 93009558 93009593 -31066579 + AT_rich Low_complexity Low_complexity 1 35 0 1 1294 286 246 8 41 chr9 93009675 93009798 -31066374 + A-rich Low_complexity Low_complexity 2 120 0 1 1294 1738 288 48 27 chr9 93009820 93010405 -31065767 - Lx7 LINE L1 -389 7307 6711 1 1294 523 315 52 85 chr9 93010406 93011196 -31064976 - L1MA4 LINE L1 -4381 2468 1705 1 1294 332 39 0 73 chr9 93011809 93011864 -31064308 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 1294 262 267 29 29 chr9 93012764 93012868 -31063304 + CT-rich Low_complexity Low_complexity 4 107 0 1 1294 304 285 112 51 chr9 93013842 93013877 -31062295 + Charlie1 DNA MER1_type 1260 1299 -1482 2 1294 420 71 0 0 chr9 93013877 93013933 -31062239 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1294 304 285 112 51 chr9 93013933 93014093 -31062079 + Charlie1 DNA MER1_type 1300 1466 -1315 2 1294 2969 76 34 2 chr9 93014606 93015014 -31061158 + BGLII LTR ERVK 1 421 0 2 1294 884 261 114 18 chr9 93015142 93015423 -31060749 - Lx2B LINE L1 -6 6994 6687 2 1294 2872 207 23 46 chr9 93015414 93016103 -31060069 + Lx2B LINE L1 6056 6728 -272 2 1294 633 297 99 11 chr9 93016253 93016525 -31059647 + Charlie1 DNA MER1_type 1760 2055 -726 2 1294 254 208 0 19 chr9 93017705 93017759 -31058413 - MLT1A1 LTR MaLR 0 408 356 2 1294 1808 311 87 40 chr9 93017929 93019392 -31056780 - Lx9 LINE L1 -176 7468 5806 2 1294 22 0 0 0 chr9 93019769 93019791 -31056381 + AT_rich Low_complexity Low_complexity 1 22 0 2 1294 9563 42 1 2 chr9 93019791 93021690 -31054482 - L1Md_F2 LINE L1 -3 6579 4682 2 1294 21 100 0 0 chr9 93021798 93021868 -31054304 + AT_rich Low_complexity Low_complexity 1 70 0 2 1294 557 268 83 14 chr9 93022080 93022224 -31053948 - RMER17B LTR ERVK 0 958 805 2 1294 1293 192 96 0 chr9 93022228 93022478 -31053694 - RMER17B LTR ERVK -684 274 1 2 1294 25 31 0 0 chr9 93023701 93023733 -31052439 + AT_rich Low_complexity Low_complexity 1 32 0 3 1294 1316 180 67 26 chr9 93024361 93024629 -31051543 - Lx3C LINE L1 -9 6967 6689 3 1294 1306 161 0 9 chr9 93024625 93024845 -31051327 - Lx3C LINE L1 -546 6430 6213 3 1294 203 0 0 36 chr9 93024967 93024995 -31051177 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 3 1294 316 372 8 0 chr9 93025103 93025224 -31050948 - Lx8 LINE L1 -537 6936 6815 3 1294 2609 178 93 38 chr9 93025839 93026418 -31049754 - RMER19C LTR ERVK 0 611 1 3 1294 1453 210 123 134 chr9 93026422 93026733 -31049439 - RMER6C LTR ERVK -117 603 349 3 1294 575 132 0 9 chr9 93026733 93026848 -31049324 + (AACTG)n Simple_repeat Simple_repeat 2 115 0 3 1294 1453 211 150 52 chr9 93026848 93027146 -31049026 - RMER6C LTR ERVK -342 348 1 3 1294 383 277 68 37 chr9 93027926 93028019 -31048153 - L1MC1 LINE L1 -2 6331 6241 3 1294 423 0 0 0 chr9 93028019 93028066 -31048106 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1294 383 277 68 37 chr9 93028066 93028163 -31048009 - L1MC1 LINE L1 -93 6240 6136 3 1294 180 97 0 0 chr9 93029078 93029109 -31047063 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1294 426 331 15 0 chr9 93029644 93029774 -31046398 - B1F SINE Alu -2 147 16 4 1294 824 289 62 95 chr9 93030389 93030779 -31045393 + MTEa LTR MaLR 3 379 0 4 1294 512 15 15 0 chr9 93030886 93030951 -31045221 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1294 453 186 30 40 chr9 93031787 93031888 -31044284 - B2_Mm2 SINE B2 -7 188 89 4 1294 483 62 0 0 chr9 93032289 93032353 -31043819 + B1_Mus2 SINE Alu 1 64 -83 4 1294 38012 48 12 4 chr9 93032353 93038460 -31037712 - L1Md_T LINE L1 -1 6581 428 4 1294 728 69 9 29 chr9 93038464 93038569 -31037603 + B1_Mm SINE Alu 45 147 0 4 1294 495 118 0 0 chr9 93038573 93038649 -31037523 + (A)n Simple_repeat Simple_repeat 1 76 0 4 1294 708 305 45 7 chr9 93039271 93039530 -31036642 - ORR1D2-int LTR MaLR -1352 228 3 4 1294 811 319 97 15 chr9 93039544 93039875 -31036297 - ORR1D2 LTR MaLR -12 358 1 4 1294 44 20 0 0 chr9 93039982 93040033 -31036139 + AT_rich Low_complexity Low_complexity 1 51 0 4 1294 729 92 12 44 chr9 93040544 93040704 -31035468 - RMER17B LTR ERVK -498 460 306 5 1294 274 376 54 41 chr9 93040818 93040965 -31035207 + ID_B1 SINE B4 40 188 -36 5 1294 652 23 23 0 chr9 93040971 93041057 -31035115 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 1294 1661 241 27 34 chr9 93041262 93041670 -31034502 - MTD LTR MaLR 0 419 15 5 1294 281 336 30 23 chr9 93044006 93044137 -31032035 - MER5A DNA MER1_type -25 164 33 5 1294 597 230 98 73 chr9 93044385 93044619 -31031553 + RLTR14 LTR ERV1 6 245 -137 5 1294 184 54 81 0 chr9 93044619 93044656 -31031516 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1294 225 351 49 66 chr9 93044677 93044799 -31031373 + RLTR14 LTR ERV1 263 382 0 5 1294 196 254 61 45 chr9 93045175 93045241 -31030931 + L2b LINE L2 3291 3357 -18 5 1294 721 126 36 0 chr9 93045784 93045895 -31030277 - Lx3A LINE L1 -288 6693 6579 5 1294 312 91 0 0 chr9 93045932 93045976 -31030196 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 5 1294 256 200 25 0 chr9 93046176 93046256 -31029916 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 6 1294 3831 215 67 86 chr9 93046441 93047568 -31028604 - RMER1A Other Other -6 1024 1 6 1294 29930 86 52 14 chr9 93047806 93053572 -31022600 - L1Md_F2 LINE L1 -12 6570 588 6 1294 464 293 21 35 chr9 93053592 93053737 -31022435 + RSINE1 SINE B4 23 165 0 6 1294 29 0 0 0 chr9 93053837 93053866 -31022306 + AT_rich Low_complexity Low_complexity 1 29 0 6 1294 473 171 25 8 chr9 93054006 93054124 -31022048 + (TA)n Simple_repeat Simple_repeat 2 121 0 6 1294 4008 47 2 8 chr9 93054482 93054976 -31021196 - L1Md_F2 LINE L1 -18 6564 6074 6 1294 21 57 0 0 chr9 93055741 93055776 -31020396 + AT_rich Low_complexity Low_complexity 1 35 0 6 1294 270 304 89 0 chr9 93056495 93056607 -31019565 + MLT1A LTR MaLR 28 149 -225 6 1294 784 206 28 17 chr9 93056610 93056788 -31019384 - MTE2a LTR MaLR -3 376 197 6 1294 21 0 0 0 chr9 93057491 93057512 -31018660 + AT_rich Low_complexity Low_complexity 1 21 0 7 1294 249 323 0 0 chr9 93059147 93059209 -31016963 - ID SINE ID -140 84 23 7 1294 243 0 0 0 chr9 93060052 93060079 -31016093 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1294 1046 81 0 14 chr9 93060079 93060217 -31015955 - B1_Mm SINE Alu -9 138 3 7 1294 26 50 0 0 chr9 93060396 93060436 -31015736 + AT_rich Low_complexity Low_complexity 1 40 0 7 1295 779 294 28 54 chr9 93061802 93062347 -31013825 - RLTR11B LTR ERVK -3 525 7 7 1295 1143 322 43 35 chr9 93062378 93062886 -31013286 - Lx9 LINE L1 -704 6940 6429 7 1295 873 258 33 77 chr9 93062887 93063348 -31012824 + Lx8 LINE L1 5531 6007 -1637 7 1295 306 0 0 0 chr9 93063392 93063426 -31012746 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1295 25 31 0 0 chr9 93063550 93063582 -31012590 + AT_rich Low_complexity Low_complexity 1 32 0 7 1295 224 236 0 0 chr9 93064112 93064167 -31012005 + T-rich Low_complexity Low_complexity 1 55 0 8 1295 2746 302 105 25 chr9 93064844 93065748 -31010424 - L1_Mur3 LINE L1 -12 5868 4934 8 1295 3319 44 12 0 chr9 93065748 93066160 -31010012 - L1Md_F3 LINE L1 -13 6571 6155 8 1295 2746 302 105 25 chr9 93066160 93066850 -31009322 - L1_Mur3 LINE L1 -947 4933 4146 8 1295 885 303 88 15 chr9 93067072 93067543 -31008629 + Lx8 LINE L1 6068 6571 -902 7 1295 333 324 7 80 chr9 93067570 93067721 -31008451 + Lx8 LINE L1 7090 7229 -244 7 1295 1116 95 0 0 chr9 93070264 93070411 -31005761 + B1_Mus2 SINE Alu 1 147 0 8 1295 332 235 15 0 chr9 93070439 93070507 -31005665 + tRNA-Ser-TCA(m) tRNA tRNA 2 70 -3 8 1295 354 195 23 58 chr9 93071147 93071234 -31004938 - HAL1-3A_ME LINE L1 -800 2058 1975 8 1295 474 18 0 0 chr9 93071236 93071291 -31004881 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1295 23 33 0 0 chr9 93071404 93071434 -31004738 + AT_rich Low_complexity Low_complexity 1 30 0 8 1295 229 306 61 61 chr9 93071887 93072002 -31004170 + L1MEg1 LINE L1 599 713 -5522 8 1295 209 128 0 25 chr9 93072099 93072139 -31004033 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 8 1295 247 259 113 80 chr9 93072570 93072721 -31003451 + ORR1E LTR MaLR 99 254 -105 9 1295 2219 136 69 5 chr9 93072916 93073309 -31002863 + Lx2B LINE L1 6578 6995 -5 9 1295 1510 106 0 54 chr9 93073314 93073553 -31002619 - RLTR1D LTR ERV1 -223 382 157 9 1295 491 243 0 35 chr9 93074321 93074436 -31001736 + B1_Mur1 SINE Alu 38 148 -1 9 1295 1165 311 97 22 chr9 93075389 93075977 -31000195 + MTE-int LTR MaLR 1 632 -948 9 1295 213 135 27 0 chr9 93077496 93077533 -30998639 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 9 1295 296 324 115 0 chr9 93077578 93077717 -30998455 - RSINE1 SINE B4 -8 157 3 9 1295 287 272 0 24 chr9 93077753 93077836 -30998336 + B4A SINE B4 5 85 -207 9 1295 213 300 11 53 chr9 93077836 93077848 -30998324 + B3A SINE B2 5 95 -103 9 1295 242 271 0 17 chr9 93077854 93077914 -30998258 + B4A SINE B4 163 221 -71 9 1295 1230 100 50 0 chr9 93078279 93078459 -30997713 + B2_Mm2 SINE B2 1 189 -6 9 1295 1634 87 66 0 chr9 93079553 93079667 -30996505 - Lx2 LINE L1 0 6997 6882 1 1295 225 0 0 0 chr9 93079667 93079692 -30996480 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 1 1295 1634 87 66 0 chr9 93079692 93079818 -30996354 - Lx2 LINE L1 -116 6881 6742 1 1295 731 280 163 47 chr9 93080800 93081144 -30995028 - MTD LTR MaLR -25 394 8 1 1295 270 272 53 32 chr9 93082002 93082097 -30994075 + MTE-int LTR MaLR 502 598 -982 1 1295 482 265 125 33 chr9 93082093 93082245 -30993927 + MTEa LTR MaLR 204 369 -10 1 1295 299 197 26 26 chr9 93082274 93082352 -30993820 - L1M1 LINE L1 -553 5747 5670 1 1295 879 191 69 80 chr9 93082419 93082743 -30993429 - RMER2 LTR ERV1 -177 390 2 1 1295 1873 125 17 0 chr9 93083284 93083573 -30992599 - Lx2 LINE L1 0 6997 6704 1 1295 2749 122 3 0 chr9 93083579 93083965 -30992207 + Lx2 LINE L1 6207 6593 -404 1 1295 7338 73 34 0 chr9 93083965 93085066 -30991106 + L1Md_F3 LINE L1 4878 6004 -580 1 1295 15445 73 5 13 chr9 93085066 93087720 -30988452 - L1Md_A LINE L1 -2575 3308 682 1 1295 414 0 0 0 chr9 93088707 93088753 -30987419 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1295 759 244 74 5 chr9 93088795 93088997 -30987175 - B3 SINE B2 0 216 1 1 1295 234 0 0 0 chr9 93089178 93089204 -30986968 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1 1295 1079 114 217 0 chr9 93089328 93089512 -30986660 - URR1A DNA MER1_type 0 226 3 1 1295 32 81 0 0 chr9 93089809 93089883 -30986289 + AT_rich Low_complexity Low_complexity 1 74 0 1 1295 1025 272 12 4 chr9 93090028 93090283 -30985889 + MTD LTR MaLR 1 257 -162 1 1295 1348 225 38 11 chr9 93090311 93090598 -30985574 - Lx5 LINE L1 -9 7041 6747 1 1295 698 203 31 38 chr9 93090600 93090759 -30985413 + MTD LTR MaLR 262 419 0 1 1295 592 321 161 36 chr9 93090860 93091868 -30984304 - L1M5 LINE L1 -674 5490 4355 1 1295 697 274 18 42 chr9 93091974 93092191 -30983981 + B3 SINE B2 5 216 0 1 1295 820 262 93 12 chr9 93092218 93092477 -30983695 - Lx8 LINE L1 -9 7464 7185 1 1295 855 306 0 53 chr9 93092478 93092834 -30983338 + L1_Mur3 LINE L1 4940 5276 -604 1 1295 1365 206 32 71 chr9 93092849 93092967 -30983205 + L1_Rod LINE L1 1543 1663 -4184 1 1295 304 196 130 56 chr9 93092967 93093075 -30983097 + PB1D9 SINE Alu 4 119 -1 1 1295 1365 206 32 71 chr9 93093075 93093364 -30982808 + L1_Rod LINE L1 1664 1934 -3913 1 1295 27 73 0 0 chr9 93093801 93093856 -30982316 + AT_rich Low_complexity Low_complexity 1 55 0 1 1295 611 279 345 42 chr9 93094050 93094357 -30981815 + MTD LTR MaLR 18 417 -2 1 1295 697 293 51 30 chr9 93095350 93095681 -30980491 + RLTR15 LTR ERVK 1 338 -21 1 1295 26 0 0 0 chr9 93096437 93096463 -30979709 + AT_rich Low_complexity Low_complexity 1 26 0 1 1295 245 182 0 0 chr9 93096988 93097043 -30979129 + T-rich Low_complexity Low_complexity 1 55 0 1 1295 21 0 0 0 chr9 93098082 93098103 -30978069 + AT_rich Low_complexity Low_complexity 1 21 0 1 1295 78 55 0 0 chr9 93099180 93099307 -30976865 + AT_rich Low_complexity Low_complexity 1 127 0 1 1295 1632 204 81 28 chr9 93099379 93099738 -30976434 - RLTR17 LTR ERVK 0 692 315 1 1295 810 33 58 0 chr9 93099808 93099929 -30976243 - L1Md_F3 LINE L1 0 6584 6457 1 1295 1922 179 6 6 chr9 93099931 93100263 -30975909 - RLTR17 LTR ERVK -360 332 1 1 1295 378 0 0 0 chr9 93100393 93100435 -30975737 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1295 992 130 0 0 chr9 93100542 93100688 -30975484 + B1_Mus1 SINE Alu 3 148 0 1 1295 249 145 48 0 chr9 93100688 93100750 -30975422 + A-rich Low_complexity Low_complexity 2 66 0 1 1295 22 35 0 0 chr9 93101085 93101114 -30975058 + AT_rich Low_complexity Low_complexity 1 29 0 1 1295 265 338 27 54 chr9 93101564 93101711 -30974461 + L1MB5 LINE L1 6004 6146 -28 1 1295 672 104 16 8 chr9 93102218 93102344 -30973828 + (GA)n Simple_repeat Simple_repeat 2 128 0 1 1295 1091 250 3 42 chr9 93102352 93102640 -30973532 + RMER15 LTR ERVL 299 575 0 1 1295 537 16 0 0 chr9 93103013 93103075 -30973097 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 1 1295 294 241 76 0 chr9 93105192 93105271 -30970901 + MTE2b LTR MaLR 6 90 -289 1 1295 1737 164 9 9 chr9 93105291 93105617 -30970555 - RLTR28 LTR ERVL -11 513 188 1 1295 482 55 0 27 chr9 93106037 93106112 -30970060 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 1295 2743 172 118 42 chr9 93106409 93106708 -30969464 - RMER6C LTR ERVK -5 685 354 1 1295 678 25 0 0 chr9 93106708 93106788 -30969384 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 1295 2743 172 118 42 chr9 93106788 93107125 -30969047 - RMER6C LTR ERVK -337 353 2 1 1295 24 32 0 0 chr9 93107698 93107729 -30968443 + AT_rich Low_complexity Low_complexity 1 31 0 1 1295 1256 306 47 39 chr9 93108022 93108611 -30967561 - L1MB2 LINE L1 -202 5969 5372 1 1295 1911 117 97 78 chr9 93108611 93109075 -30967097 + IAPLTR2_Mm LTR ERVK 3 475 0 1 1295 1256 306 47 39 chr9 93109075 93109152 -30967020 - L1MB2 LINE L1 -800 5371 5298 1 1295 898 276 11 63 chr9 93109245 93109531 -30966641 - RMER15 LTR ERVL -11 564 294 1 1295 246 276 60 0 chr9 93109920 93110036 -30966136 - L1MB2 LINE L1 -1767 4373 4251 1 1295 409 297 0 8 chr9 93110039 93110158 -30966014 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1295 333 0 0 0 chr9 93110188 93110225 -30965947 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1295 803 236 75 13 chr9 93110937 93111165 -30965007 + L1MC3 LINE L1 6410 6651 -1134 1 1295 207 0 0 0 chr9 93111218 93111241 -30964931 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1295 1087 236 70 7 chr9 93111244 93111530 -30964642 - RMER5 LTR ERV1 -8 526 223 1 1295 260 70 0 23 chr9 93111531 93111575 -30964597 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1 1295 2368 73 0 83 chr9 93111575 93111949 -30964223 - L1Md_F2 LINE L1 -40 6542 6200 1 1295 793 212 91 16 chr9 93111956 93112143 -30964029 - RMER5 LTR ERV1 -318 216 16 1 1295 601 326 95 32 chr9 93112358 93112865 -30963307 - BLACKJACK DNA AcHobo -940 2004 1466 1 1295 1575 257 81 31 chr9 93113536 93113928 -30962244 + Lx9 LINE L1 7037 7418 -226 1 1295 486 49 0 0 chr9 93113928 93113989 -30962183 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1295 1575 257 81 31 chr9 93113989 93114174 -30961998 + Lx9 LINE L1 7419 7642 -2 1 1295 625 245 21 7 chr9 93114196 93114340 -30961832 + B1_Mus2 SINE Alu 1 146 -1 1 1295 207 0 0 0 chr9 93114349 93114372 -30961800 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 1 1295 28 29 0 0 chr9 93115100 93115135 -30961037 + AT_rich Low_complexity Low_complexity 1 35 0 1 1295 261 303 88 29 chr9 93116650 93116854 -30959318 - L1ME1 LINE L1 -209 5970 5755 1 1295 325 58 39 0 chr9 93117224 93117276 -30958896 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1295 22 0 0 0 chr9 93117471 93117493 -30958679 + AT_rich Low_complexity Low_complexity 1 22 0 1 1295 619 345 21 21 chr9 93117764 93118056 -30958116 - MTEa LTR MaLR -6 373 82 1 1295 605 276 41 25 chr9 93118045 93118242 -30957930 - MTEb-int LTR MaLR -130 1450 1251 1 1295 536 328 25 25 chr9 93118252 93118452 -30957720 + MTEb LTR MaLR 152 351 -28 1 1295 3490 301 68 34 chr9 93118464 93119655 -30956517 - MTEb-int LTR MaLR -347 1233 2 1 1295 397 199 34 12 chr9 93119667 93119774 -30956398 - MTEb LTR MaLR -1 378 260 1 1295 241 312 114 44 chr9 93119869 93119983 -30956189 + MTE2b-int LTR MaLR 1453 1574 -6 1 1295 295 329 0 0 chr9 93119990 93120075 -30956097 + MTE2b LTR MaLR 1 85 -294 1 1295 261 0 0 0 chr9 93121031 93121060 -30955112 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1295 371 330 33 43 chr9 93121972 93122156 -30954016 + B3A SINE B2 1 182 -16 1 1295 1135 42 0 40 chr9 93123042 93123192 -30952980 + B1_Mm SINE Alu 1 144 -3 1 1295 423 0 0 0 chr9 93123192 93123239 -30952933 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1295 434 284 139 52 chr9 93123634 93123944 -30952228 - L1M4b LINE L1 -5077 2025 1542 1 1295 29 28 0 0 chr9 93125181 93125217 -30950955 + AT_rich Low_complexity Low_complexity 1 36 0 1 1295 306 173 0 0 chr9 93125873 93125948 -30950224 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1295 4152 65 50 79 chr9 93126037 93126643 -30949529 - L1_Mus1 LINE L1 0 6567 6064 1 1295 936 72 0 0 chr9 93126643 93126768 -30949404 + (TTC)n Simple_repeat Simple_repeat 2 126 0 1 1295 4152 65 50 79 chr9 93126768 93126927 -30949245 - L1_Mus1 LINE L1 -504 6063 5942 1 1295 3455 162 69 1 chr9 93126927 93127874 -30948298 - Lx4B LINE L1 -883 6175 5174 1 1295 21 36 0 0 chr9 93128396 93128424 -30947748 + AT_rich Low_complexity Low_complexity 1 28 0 1 1295 875 324 7 7 chr9 93128722 93128999 -30947173 + Lx7 LINE L1 6833 7109 -587 1 1295 1397 191 68 42 chr9 93129068 93129375 -30946797 - ORR1C2 LTR MaLR 0 384 70 1 1295 314 206 0 16 chr9 93129431 93129495 -30946677 + Lx7 LINE L1 7217 7279 -417 1 1295 21 0 0 0 chr9 93129798 93129819 -30946353 + AT_rich Low_complexity Low_complexity 1 21 0 1 1295 597 90 0 0 chr9 93131961 93132050 -30944122 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 1295 239 159 23 0 chr9 93132057 93132101 -30944071 - L1_Rod LINE L1 -929 4918 4874 1 1295 1556 335 49 25 chr9 93132123 93133378 -30942794 - L1M2 LINE L1 -1326 4817 3532 1 1295 331 326 90 38 chr9 93133964 93134189 -30941983 - MLT1H2 LTR MaLR -18 561 289 1 1295 27 29 0 0 chr9 93134781 93134815 -30941357 + AT_rich Low_complexity Low_complexity 1 34 0 1 1295 3937 94 30 2 chr9 93135225 93135801 -30940371 - L1_Mus3 LINE L1 0 6638 6047 1 1295 1422 98 0 14 chr9 93136156 93136364 -30939808 + L1_Mus2 LINE L1 6362 6566 0 1 1295 998 310 98 19 chr9 93136449 93136919 -30939253 + Lx8 LINE L1 6732 7238 -235 1 1295 234 0 0 0 chr9 93136919 93136945 -30939227 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1295 3133 46 8 2 chr9 93137001 93137397 -30938775 - L1Md_F3 LINE L1 0 6584 6187 1 1295 2393 34 3 0 chr9 93137397 93137689 -30938483 + L1Md_F3 LINE L1 5858 6150 -434 1 1295 1492 170 101 0 chr9 93137991 93138268 -30937904 - Lx2B LINE L1 -292 6708 6404 1 1295 326 373 40 47 chr9 93138268 93138417 -30937755 + B4A SINE B4 3 150 -142 1 1295 600 40 0 0 chr9 93139212 93139287 -30936885 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 1 1295 588 177 0 0 chr9 93139355 93139496 -30936676 + (CA)n Simple_repeat Simple_repeat 2 142 0 1 1295 297 140 35 0 chr9 93139496 93139553 -30936619 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1295 249 222 0 0 chr9 93139553 93139616 -30936556 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1295 633 178 34 0 chr9 93139954 93140092 -30936080 - Lx4B LINE L1 -1081 5927 5783 1 1295 586 11 32 21 chr9 93140098 93140191 -30935981 + (TTTTTG)n Simple_repeat Simple_repeat 3 96 0 1 1295 6587 192 100 47 chr9 93140218 93141194 -30934978 - Lx4B LINE L1 -334 5543 4557 1 1295 7594 136 12 1 chr9 93141194 93142394 -30933778 - Lx2 LINE L1 -1 6996 5783 2 1295 6587 192 100 47 chr9 93142394 93142428 -30933744 - Lx4B LINE L1 -1321 4556 4511 1 1295 3567 52 27 0 chr9 93142428 93142873 -30933299 - L1_Mus1 LINE L1 0 6567 6111 2 1295 6587 192 100 47 chr9 93142873 93143351 -30932821 - Lx4B LINE L1 -1367 4510 4003 1 1295 739 108 77 8 chr9 93143351 93143481 -30932691 - L1Md_F2 LINE L1 0 6582 6444 2 1295 6587 192 100 47 chr9 93143481 93143901 -30932271 - Lx4B LINE L1 -1875 4002 3532 1 1295 3826 122 28 2 chr9 93143911 93144594 -30931578 - Lx4B LINE L1 -4034 1843 1150 1 1295 318 50 0 0 chr9 93144594 93144634 -30931538 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1295 2792 155 111 7 chr9 93144634 93145020 -30931152 - Lx4B LINE L1 -5937 1149 710 1 1295 206 116 23 0 chr9 93145027 93145070 -30931102 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2 1295 25 83 0 0 chr9 93145102 93145162 -30931010 + AT_rich Low_complexity Low_complexity 1 60 0 2 1295 901 224 50 47 chr9 93145934 93146323 -30929849 - RMER6A LTR ERVK -30 726 394 2 1295 750 138 166 0 chr9 93146380 93146525 -30929647 - RMER6A LTR ERVK -521 169 1 2 1295 393 138 0 0 chr9 93146652 93146732 -30929440 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 1295 309 337 42 5 chr9 93146783 93146974 -30929198 + L1M3 LINE L1 5647 5844 -327 2 1295 432 337 30 66 chr9 93147009 93147311 -30928861 + B4A SINE B4 2 292 0 2 1295 3044 132 30 14 chr9 93147709 93148251 -30927921 - L1_Mm LINE L1 -946 5357 4778 2 1295 1448 98 40 4 chr9 93148252 93148478 -30927694 + L1_Mus3 LINE L1 6398 6631 -7 2 1295 987 128 0 0 chr9 93149106 93149247 -30926925 + B1_Mus2 SINE Alu 1 141 -6 2 1295 519 17 0 0 chr9 93150506 93150566 -30925606 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1295 282 196 78 0 chr9 93152105 93152156 -30924016 + ID2 SINE ID 4 58 -25 2 1295 2364 273 104 32 chr9 93152161 93153129 -30923043 + Lx6 LINE L1 6060 7290 -170 2 1295 416 306 57 60 chr9 93153750 93153780 -30922392 - RMER6A LTR ERVK -111 350 321 2 1295 314 23 23 0 chr9 93153780 93153823 -30922349 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 1295 416 306 57 60 chr9 93153823 93154008 -30922164 - RMER6A LTR ERVK -141 320 142 2 1295 198 0 0 0 chr9 93154008 93154030 -30922142 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1295 416 306 57 60 chr9 93154030 93154053 -30922119 - RMER6A LTR ERVK -320 141 121 2 1295 1815 192 70 70 chr9 93154053 93154511 -30921661 - RMER6B LTR ERVK 0 461 4 2 1295 552 177 59 4 chr9 93154511 93154621 -30921551 - RMER6A LTR ERVK -341 120 1 2 1295 276 194 0 0 chr9 93154806 93154868 -30921304 - L1M2 LINE L1 -1098 5045 4984 2 1295 262 62 0 59 chr9 93154889 93154940 -30921232 + (TATG)n Simple_repeat Simple_repeat 1 48 0 2 1295 540 0 0 0 chr9 93155198 93155258 -30920914 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 2 1295 2253 250 56 3 chr9 93155308 93155875 -30920297 - Lx4B LINE L1 -7 7051 6455 2 1295 6832 144 11 9 chr9 93155875 93157103 -30919069 + L1_Mur2 LINE L1 3227 4456 -1421 2 1295 615 296 20 50 chr9 93157170 93157369 -30918803 - B3 SINE B2 -1 215 23 2 1295 252 0 0 0 chr9 93157434 93157462 -30918710 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 2 1295 954 70 0 8 chr9 93157462 93157584 -30918588 - B1_Mus1 SINE Alu -13 135 14 2 1295 503 240 62 129 chr9 93158699 93158924 -30917248 + B3 SINE B2 1 210 -6 2 1295 696 205 2 0 chr9 93158930 93159352 -30916820 + (TG)n Simple_repeat Simple_repeat 1 423 0 2 1295 315 0 0 0 chr9 93159764 93159799 -30916373 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1295 1037 72 29 0 chr9 93160956 93161094 -30915078 + B1_Mus1 SINE Alu 2 143 -5 2 1295 447 374 23 36 chr9 93161279 93161495 -30914677 + MLT1D LTR MaLR 13 225 -280 2 1295 698 352 30 9 chr9 93161495 93161727 -30914445 + B4A SINE B4 2 238 -54 2 1295 192 111 0 0 chr9 93161756 93161792 -30914380 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1295 21 57 0 0 chr9 93162689 93162724 -30913448 + AT_rich Low_complexity Low_complexity 1 35 0 2 1295 21 36 0 0 chr9 93162946 93162974 -30913198 + AT_rich Low_complexity Low_complexity 1 28 0 2 1295 21 57 0 0 chr9 93163048 93163083 -30913089 + AT_rich Low_complexity Low_complexity 1 35 0 2 1295 23 68 0 0 chr9 93163382 93163426 -30912746 + AT_rich Low_complexity Low_complexity 1 44 0 2 1295 231 393 26 26 chr9 93165233 93165348 -30910824 - RMER20B LTR ERVK -23 604 490 2 1295 405 284 133 43 chr9 93165556 93165806 -30910366 - RMER20B LTR ERVK -223 419 163 2 1295 3015 239 92 34 chr9 93165935 93166735 -30909437 - RMER1B Other Other -10 1056 210 2 1295 1376 241 40 10 chr9 93167289 93167688 -30908484 - RMER19A LTR ERVK -266 471 1 2 1295 183 170 0 0 chr9 93167902 93167949 -30908223 + A-rich Low_complexity Low_complexity 1 47 0 2 1295 2668 286 28 16 chr9 93168879 93169701 -30906471 + Lx7 LINE L1 6466 7297 -399 2 1295 333 291 23 76 chr9 93169735 93169906 -30906266 + Lx7 LINE L1 7520 7681 -15 2 1295 24 32 0 0 chr9 93170720 93170751 -30905421 + AT_rich Low_complexity Low_complexity 1 31 0 2 1295 2194 72 7 0 chr9 93171025 93171316 -30904856 + L1Md_F2 LINE L1 6275 6567 -15 2 1295 267 31 0 0 chr9 93171316 93171348 -30904824 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1295 4839 124 7 7 chr9 93171635 93172383 -30903789 + Lx3A LINE L1 6234 6981 0 2 1295 21 71 0 0 chr9 93172464 93172506 -30903666 + AT_rich Low_complexity Low_complexity 1 42 0 2 1295 3070 102 4 7 chr9 93172617 93173072 -30903100 - L1_Mus3 LINE L1 0 6638 6185 2 1295 308 320 49 20 chr9 93173083 93173185 -30902987 - RSINE1 SINE B4 -2 163 59 2 1295 256 236 78 39 chr9 93173215 93173343 -30902829 - L1MA8 LINE L1 -141 6150 6018 2 1295 632 278 138 31 chr9 93173579 93174159 -30902013 - L1MA8 LINE L1 -549 5742 5065 2 1295 1941 173 17 0 chr9 93174159 93174512 -30901660 + RLTR15 LTR ERVK 1 359 0 2 1295 503 297 172 50 chr9 93174512 93174887 -30901285 - L1MA8 LINE L1 -1079 5064 4670 2 1295 931 192 318 40 chr9 93174887 93175186 -30900986 + ORR1C2 LTR MaLR 3 384 0 2 1295 503 297 172 50 chr9 93175186 93175378 -30900794 - L1MA8 LINE L1 -1474 4669 4452 2 1295 1403 277 86 24 chr9 93178483 93178982 -30897190 - RMER5 LTR ERV1 -2 532 3 2 1295 37677 19 3 7 chr9 93180125 93185734 -30890438 + L1Md_A LINE L1 1 5586 -297 2 1295 8666 18 1 0 chr9 93185734 93186728 -30889444 + L1Md_A LINE L1 5587 6581 -1 2 1295 288 303 83 57 chr9 93186816 93187144 -30889028 + L1MA4A LINE L1 5796 6144 -156 2 1295 2144 189 22 7 chr9 93187532 93187937 -30888235 - Lx5 LINE L1 -409 6641 6231 2 1295 1669 220 48 78 chr9 93188130 93188295 -30887877 + MTC LTR MaLR 1 177 -244 2 1295 6109 57 7 0 chr9 93188295 93189065 -30887107 + L1_Mus1 LINE L1 5791 6565 -2 2 1295 1669 220 48 78 chr9 93189065 93189333 -30886839 + MTC LTR MaLR 178 421 0 2 1295 3378 46 0 5 chr9 93189456 93189873 -30886299 - L1Md_T LINE L1 -891 4992 4578 2 1295 5047 22 2 0 chr9 93189872 93190462 -30885710 + L1Md_T LINE L1 4996 5586 -297 2 1295 8304 30 11 0 chr9 93190462 93191444 -30884728 + L1Md_T LINE L1 5587 6579 -3 2 1296 447 272 59 73 chr9 93192968 93193254 -30882918 + L1_Rod LINE L1 901 1182 -6426 2 1296 226 255 10 96 chr9 93193334 93193438 -30882734 + L1_Rod LINE L1 1289 1383 -4464 2 1296 2783 225 43 25 chr9 93193436 93194043 -30882129 + Lx5 LINE L1 6433 7050 0 2 1296 7068 163 56 113 chr9 93194698 93194835 -30881337 - RLTR21 LTR ERVK -4 1568 1417 2 1296 7165 55 11 1 chr9 93194835 93195719 -30880453 + RLTR13B1 LTR ERVK 1 893 0 2 1296 7068 163 56 113 chr9 93195719 93195834 -30880338 - RLTR21 LTR ERVK -156 1416 1289 2 1296 321 26 0 0 chr9 93195834 93195872 -30880300 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1296 7068 163 56 113 chr9 93195872 93196094 -30880078 - RLTR21 LTR ERVK -284 1288 1095 2 1296 195 42 0 0 chr9 93196094 93196118 -30880054 + (CATATA)n Simple_repeat Simple_repeat 5 28 0 2 1296 7068 163 56 113 chr9 93196118 93197304 -30878868 - RLTR21 LTR ERVK -478 1094 2 2 1296 459 0 0 0 chr9 93197779 93197830 -30878342 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1296 241 200 42 14 chr9 93201240 93201311 -30874861 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 2 1296 248 298 53 15 chr9 93201394 93201527 -30874645 + Lx7 LINE L1 7559 7696 0 2 1296 253 365 48 0 chr9 93202197 93202301 -30873871 + PB1D9 SINE Alu 1 109 -11 2 1296 223 367 94 65 chr9 93202301 93202398 -30873774 + B4A SINE B4 86 292 0 2 1296 674 309 64 6 chr9 93204284 93204645 -30871527 + L1MA6 LINE L1 5804 6185 -115 2 1296 298 225 0 53 chr9 93204829 93204904 -30871268 - PB1D10 SINE Alu 0 117 47 2 1296 542 204 80 0 chr9 93205275 93205388 -30870784 - B1_Mur1 SINE Alu -5 144 23 2 1296 2147 97 16 3 chr9 93205558 93205869 -30870303 - L1_Mus2 LINE L1 -12 6554 6240 2 1296 233 373 61 13 chr9 93206241 93206429 -30869743 - MIR SINE MIR -30 238 29 2 1296 540 0 0 0 chr9 93207172 93207232 -30868940 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1296 297 0 0 0 chr9 93208180 93208213 -30867959 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1296 222 338 15 0 chr9 93208397 93208465 -30867707 + ID4 SINE ID 2 70 -13 2 1296 441 0 0 0 chr9 93208465 93208514 -30867658 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1296 2350 76 0 9 chr9 93209851 93210169 -30866003 + L1_Mus2 LINE L1 6252 6566 0 2 1296 21 0 0 0 chr9 93210360 93210381 -30865791 + AT_rich Low_complexity Low_complexity 1 21 0 2 1296 1823 189 7 61 chr9 93210796 93211223 -30864949 - Lx2B LINE L1 -514 5363 4960 2 1296 2408 158 9 39 chr9 93211224 93211852 -30864320 + Lx2B LINE L1 5375 5958 -1042 2 1296 737 129 0 8 chr9 93211850 93211967 -30864205 + Lx2A1 LINE L1 5619 5734 -1274 2 1296 5596 167 35 16 chr9 93211950 93212974 -30863198 + Lx2B LINE L1 5953 6996 -4 2 1296 279 333 136 37 chr9 93214094 93214256 -30861916 - MER5B DNA MER1_type 0 178 1 2 1296 634 331 18 12 chr9 93214438 93214757 -30861415 + ORR1E LTR MaLR 3 379 0 2 1296 575 89 22 0 chr9 93214802 93214892 -30861280 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 2 1296 7468 44 6 1 chr9 93215022 93215934 -30860238 - L1Md_F2 LINE L1 -12 6570 5655 2 1296 447 19 0 0 chr9 93215934 93215986 -30860186 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 2 1296 718 361 37 13 chr9 93216002 93216378 -30859794 + MTE-int LTR MaLR 69 453 -1127 2 1296 1270 320 86 19 chr9 93216393 93216868 -30859304 + MTE-int LTR MaLR 919 1425 -155 2 1296 1254 263 6 19 chr9 93216879 93217193 -30858979 - Lx6 LINE L1 -15 7445 7136 2 1296 1215 161 58 0 chr9 93217197 93217458 -30858714 + L1_Mur3 LINE L1 1411 1686 -4194 2 1296 315 300 44 26 chr9 93217716 93217829 -30858343 - PB1D10 SINE Alu 0 117 3 2 1296 453 32 0 0 chr9 93217921 93217983 -30858189 + L1Md_T LINE L1 6521 6582 0 2 1296 3200 47 3 0 chr9 93218363 93218747 -30857425 + IAPEY_LTR LTR ERVK 1 385 0 2 1296 1290 43 0 24 chr9 93218747 93218913 -30857259 + IAPEy-int LTR ERVK 1 162 -7351 2 1296 2708 157 16 14 chr9 93218910 93219426 -30856746 + IAPEy-int LTR ERVK 542 1058 -6455 2 1296 21759 45 3 6 chr9 93219426 93222141 -30854031 + IAPEy-int LTR ERVK 4804 7509 -4 2 1296 3167 47 3 3 chr9 93222145 93222530 -30853642 + IAPEY_LTR LTR ERVK 1 385 0 2 1296 271 337 112 0 chr9 93224781 93224879 -30851293 + B1F SINE Alu 9 117 -32 2 1296 319 336 58 0 chr9 93224791 93224895 -30851277 + ID_B1 SINE B4 103 212 -12 2 1296 690 13 0 0 chr9 93224897 93224976 -30851196 + (GAA)n Simple_repeat Simple_repeat 2 80 0 2 1296 444 343 98 24 chr9 93225007 93225261 -30850911 + B4A SINE B4 2 274 -18 2 1296 351 181 0 0 chr9 93225269 93225341 -30850831 + (CATA)n Simple_repeat Simple_repeat 3 74 0 3 1296 5432 140 30 3 chr9 93225786 93226659 -30849513 - Lx2 LINE L1 -1 6996 6101 3 1296 655 274 59 18 chr9 93226893 93227179 -30848993 - L1MA6 LINE L1 -147 6153 5856 3 1296 436 262 60 0 chr9 93227868 93228017 -30848155 + Lx9 LINE L1 7316 7473 -171 3 1296 234 250 0 0 chr9 93228275 93228331 -30847841 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 3 1296 582 15 0 0 chr9 93228338 93228405 -30847767 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 1296 180 111 0 0 chr9 93228406 93228433 -30847739 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 3 1296 213 287 59 10 chr9 93228486 93228588 -30847584 + BC1_Mm scRNA scRNA 5 111 -41 3 1296 1046 67 0 0 chr9 93228685 93228820 -30847352 + B1_Mus2 SINE Alu 13 147 0 3 1296 824 237 111 1 chr9 93231361 93231579 -30844593 + MTD LTR MaLR 166 419 0 3 1296 681 290 110 46 chr9 93231580 93232233 -30843939 + MTD-int LTR MaLR 2 996 -262 3 1296 527 331 35 0 chr9 93232247 93232416 -30843756 + B3 SINE B2 25 199 -17 3 1296 517 278 96 52 chr9 93232429 93232813 -30843359 + L1_Rod LINE L1 2345 2745 -3102 3 1296 1125 328 26 10 chr9 93232832 93233220 -30842952 + Lx8 LINE L1 6713 7106 -367 3 1296 883 250 15 0 chr9 93233485 93233689 -30842483 + B3 SINE B2 5 211 -5 3 1296 309 290 104 26 chr9 93233705 93233935 -30842237 + L1MB7 LINE L1 5731 5978 -206 3 1296 543 56 0 0 chr9 93234012 93234083 -30842089 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1296 258 276 90 20 chr9 93234096 93234196 -30841976 - MT2A LTR ERVL -78 455 349 3 1296 189 74 0 0 chr9 93234231 93234258 -30841914 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1296 182 192 19 0 chr9 93234270 93234322 -30841850 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1296 235 279 24 48 chr9 93234326 93234492 -30841680 + Lx9 LINE L1 7463 7624 -20 3 1296 32091 82 2 1 chr9 93235186 93240464 -30835708 + L1Md_F2 LINE L1 304 5586 -297 3 1296 7871 53 3 1 chr9 93240465 93241456 -30834716 + L1Md_F2 LINE L1 5588 6580 -2 3 1296 543 78 0 0 chr9 93241464 93241541 -30834631 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 1296 204 40 0 0 chr9 93241588 93241613 -30834559 + (CATA)n Simple_repeat Simple_repeat 2 26 0 3 1296 743 309 101 38 chr9 93242171 93242517 -30833655 + MER21B LTR ERV1 287 654 -209 3 1296 1060 100 0 72 chr9 93243616 93243836 -30832336 - L1Md_F2 LINE L1 0 6582 6403 3 1296 603 282 0 62 chr9 93243845 93244038 -30832134 + B3 SINE B2 30 210 -6 3 1296 22 88 0 0 chr9 93244043 93244100 -30832072 + AT_rich Low_complexity Low_complexity 1 57 0 3 1296 1837 42 16 12 chr9 93244395 93244638 -30831534 + L1Md_F3 LINE L1 6339 6582 -2 3 1296 216 312 41 20 chr9 93245149 93245247 -30830925 - B1F SINE Alu -4 145 46 3 1296 513 0 0 0 chr9 93246341 93246398 -30829774 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1296 1501 263 97 0 chr9 93246611 93246984 -30829188 - MTD LTR MaLR -5 414 6 3 1296 238 158 0 0 chr9 93246989 93247027 -30829145 - MTD-int LTR MaLR 0 1098 1061 3 1296 1241 69 28 6 chr9 93247048 93247224 -30828948 - L1_Mus1 LINE L1 0 6567 6388 3 1296 2689 70 0 0 chr9 93247224 93247565 -30828607 + L1_Mus1 LINE L1 5994 6334 -233 3 1296 250 227 0 15 chr9 93247566 93247633 -30828539 - MTC-int LTR MaLR -25 1233 1168 3 1296 657 287 21 21 chr9 93247659 93247851 -30828321 - MTC-int LTR MaLR -1055 203 12 3 1296 515 206 10 10 chr9 93247877 93247975 -30828197 - MTD LTR MaLR -130 289 192 3 1296 397 394 105 15 chr9 93248040 93248365 -30827807 - MLT1A LTR MaLR -17 357 4 3 1296 21 0 0 0 chr9 93248370 93248391 -30827781 + AT_rich Low_complexity Low_complexity 1 21 0 3 1296 253 160 82 36 chr9 93248396 93248506 -30827666 + (TATAA)n Simple_repeat Simple_repeat 1 115 0 3 1296 562 257 170 0 chr9 93248608 93248779 -30827393 - B3 SINE B2 0 216 17 3 1296 22 35 0 0 chr9 93248842 93248871 -30827301 + AT_rich Low_complexity Low_complexity 1 29 0 3 1296 22 35 0 0 chr9 93249279 93249308 -30826864 + AT_rich Low_complexity Low_complexity 1 29 0 3 1296 517 161 31 24 chr9 93250232 93250358 -30825814 - L1MC LINE L1 -2191 3955 3820 3 1296 1583 239 64 3 chr9 93250442 93250803 -30825369 - ORR1C2 LTR MaLR 0 384 2 3 1296 279 0 0 0 chr9 93250915 93250946 -30825226 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1296 1260 248 116 60 chr9 93250949 93251537 -30824635 + L1_Mur3 LINE L1 4445 5065 -815 3 1296 903 307 100 90 chr9 93251676 93251987 -30824185 + Lx9 LINE L1 6649 6949 -695 3 1296 1110 65 0 0 chr9 93251987 93252126 -30824046 + B1_Mus1 SINE Alu 2 140 -8 3 1296 513 32 0 0 chr9 93252126 93252189 -30823983 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1296 903 307 100 90 chr9 93252189 93252624 -30823548 + Lx9 LINE L1 6950 7403 -241 3 1296 996 48 0 0 chr9 93253770 93253896 -30822276 + (TG)n Simple_repeat Simple_repeat 1 126 0 3 1296 648 0 0 0 chr9 93253896 93253968 -30822204 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1296 298 290 31 31 chr9 93254085 93254181 -30821991 - B1F SINE Alu -6 143 48 3 1296 305 304 43 11 chr9 93254265 93254358 -30821814 - MTEb LTR MaLR -20 359 264 3 1296 258 430 0 0 chr9 93254465 93254572 -30821600 - MTEb LTR MaLR -212 147 41 3 1296 308 281 56 97 chr9 93255057 93255201 -30820971 - L1M5 LINE L1 -1806 4340 4207 3 1296 405 95 0 0 chr9 93255201 93255264 -30820908 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1296 333 0 0 0 chr9 93255264 93255300 -30820872 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1296 308 281 56 97 chr9 93255300 93255442 -30820730 - L1M5 LINE L1 -1940 4206 4066 3 1296 38973 34 1 6 chr9 93255669 93261840 -30814332 - L1Md_T LINE L1 -1 6581 447 3 1296 369 0 0 0 chr9 93262250 93262291 -30813881 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1296 336 94 0 0 chr9 93262291 93262343 -30813829 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1296 581 295 79 142 chr9 93263035 93263102 -30813070 - RLTR18B LTR ERVK -3 509 449 3 1296 1137 115 27 32 chr9 93263102 93263290 -30812882 + B2_Mm2 SINE B2 1 187 -8 3 1296 581 295 79 142 chr9 93263290 93263764 -30812408 - RLTR18B LTR ERVK -64 448 2 3 1296 264 22 43 22 chr9 93264269 93264315 -30811857 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 3 1296 358 267 12 0 chr9 93264434 93264520 -30811652 + MTEb LTR MaLR 1 87 -292 3 1296 209 189 0 11 chr9 93264640 93264731 -30811441 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 1296 194 0 39 0 chr9 93264793 93264819 -30811353 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1296 180 0 0 0 chr9 93264819 93264838 -30811334 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1296 423 0 0 0 chr9 93264838 93264884 -30811288 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1296 819 278 58 12 chr9 93265420 93265678 -30810494 + MTEb LTR MaLR 109 378 -1 3 1296 2843 305 122 28 chr9 93265680 93266849 -30809323 + MTEb-int LTR MaLR 2 1280 -300 3 1296 229 272 105 19 chr9 93267238 93267343 -30808829 + RMER10A LTR ERVL 278 391 -51 3 1296 934 295 31 46 chr9 93267355 93267682 -30808490 + MTEb-int LTR MaLR 1251 1572 -8 3 1296 893 316 26 73 chr9 93267687 93267863 -30808309 + MTEb LTR MaLR 2 173 -206 3 1296 951 121 0 0 chr9 93267863 93267995 -30808177 + B1_Mus1 SINE Alu 2 133 -15 3 1296 803 73 8 0 chr9 93267998 93268122 -30808050 + (CAA)n Simple_repeat Simple_repeat 2 126 0 3 1296 893 316 26 73 chr9 93268122 93268323 -30807849 + MTEb LTR MaLR 174 365 -14 3 1296 268 243 40 0 chr9 93268752 93268826 -30807346 + Lx8 LINE L1 7037 7113 -360 3 1296 383 357 57 26 chr9 93269300 93269530 -30806642 + Lx8 LINE L1 6933 7169 -304 3 1296 335 317 172 67 chr9 93269829 93270028 -30806144 + MLT1D LTR MaLR 12 214 -291 3 1296 342 0 0 0 chr9 93270028 93270066 -30806106 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1296 335 317 172 67 chr9 93270066 93270255 -30805917 + MLT1D LTR MaLR 215 441 -64 3 1296 27 0 0 0 chr9 93270287 93270314 -30805858 + AT_rich Low_complexity Low_complexity 1 27 0 3 1296 3121 139 101 26 chr9 93271257 93271834 -30804338 + Lx3A LINE L1 6353 6972 -9 3 1296 185 59 77 19 chr9 93271846 93271898 -30804274 + A-rich Low_complexity Low_complexity 4 58 0 3 1296 396 0 0 0 chr9 93272234 93272278 -30803894 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1296 414 0 0 0 chr9 93272278 93272323 -30803849 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1296 384 333 50 21 chr9 93272324 93272465 -30803707 - B3A SINE B2 -50 148 4 3 1296 5137 7 0 0 chr9 93273039 93273611 -30802561 - L1Md_T LINE L1 0 6585 6014 3 1296 30820 28 0 0 chr9 93273611 93279615 -30796557 + L1Md_T LINE L1 1 6023 -562 3 1296 511 325 115 10 chr9 93281003 93281211 -30794961 + B4A SINE B4 1 230 -62 3 1296 2378 84 9 0 chr9 93281215 93281538 -30794634 - IAPEY2_LTR LTR ERVK 0 357 32 3 1296 5143 106 4 6 chr9 93281548 93282329 -30793843 - IAPEy-int LTR ERVK 0 7513 6735 3 1296 3394 75 0 2 chr9 93282319 93282774 -30793398 - IAPEy-int LTR ERVK -1367 6214 5761 3 1296 3112 89 0 18 chr9 93282765 93283213 -30792959 - IAPEy-int LTR ERVK -1939 5642 5203 3 1296 553 62 24 12 chr9 93283492 93283574 -30792598 - IAPEy-int LTR ERVK -2932 4649 4567 3 1296 396 89 0 0 chr9 93283573 93283629 -30792543 - IAPEy-int LTR ERVK -3784 3622 3567 3 1296 560 227 0 0 chr9 93283655 93283774 -30792398 - IAPEy-int LTR ERVK -4653 2753 2635 3 1296 326 244 0 55 chr9 93283786 93283877 -30792295 - IAPEy-int LTR ERVK -4867 2539 2454 3 1296 433 214 98 0 chr9 93283890 93284002 -30792170 - RMER16-int LTR ERVK -5077 1060 938 3 1296 1480 195 102 36 chr9 93284007 93284486 -30791686 - RMER16-int LTR ERVK -4750 656 251 3 1296 362 132 26 94 chr9 93284598 93284715 -30791457 - IAPEY3-int LTR ERVK -6629 952 844 3 1296 877 112 61 6 chr9 93284748 93284928 -30791244 - IAPEY3-int LTR ERVK -6930 750 561 3 1296 2403 167 13 28 chr9 93284913 93285382 -30790790 + IAPEY3-int LTR ERVK 117 578 -7102 3 1296 577 181 0 52 chr9 93285358 93285492 -30790680 - IAPEY3-int LTR ERVK -7386 127 1 3 1296 2420 77 12 2 chr9 93285492 93285851 -30790321 - IAPEY2_LTR LTR ERVK -2 383 29 3 1296 472 95 24 0 chr9 93285904 93285988 -30790184 + (CAAAA)n Simple_repeat Simple_repeat 3 88 0 3 1296 459 0 0 0 chr9 93287505 93287556 -30788616 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1296 417 172 0 0 chr9 93287822 93287915 -30788257 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1296 22 35 0 0 chr9 93288016 93288045 -30788127 + AT_rich Low_complexity Low_complexity 1 29 0 3 1296 564 300 106 94 chr9 93288101 93288451 -30787721 + ORR1E LTR MaLR 6 359 0 3 1296 1771 194 26 11 chr9 93289119 93289468 -30786704 - ORR1B1 LTR MaLR 0 394 41 3 1296 4466 12 0 0 chr9 93289649 93290142 -30786030 - MT2_Mm LTR ERVL 0 493 1 3 1296 302 0 0 0 chr9 93290142 93290180 -30785992 - MERVL-int LTR ERVL 0 5485 5448 3 1296 390 167 46 35 chr9 93290180 93290267 -30785905 - ORR1B1-int LTR MaLR -1323 640 553 3 1296 45838 14 0 0 chr9 93290267 93295626 -30780546 - MERVL-int LTR ERVL -125 5360 1 3 1296 4466 12 0 0 chr9 93295626 93296119 -30780053 - MT2_Mm LTR ERVL 0 493 1 3 1296 426 85 0 0 chr9 93296944 93297003 -30779169 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1296 21 36 0 0 chr9 93297289 93297317 -30778855 + AT_rich Low_complexity Low_complexity 1 28 0 3 1296 207 321 0 0 chr9 93297488 93297600 -30778572 + A-rich Low_complexity Low_complexity 1 112 0 3 1296 2308 310 21 12 chr9 93297643 93298482 -30777690 - Lx7 LINE L1 -456 7240 6394 3 1296 552 303 13 0 chr9 93298533 93298764 -30777408 + Lx7 LINE L1 5320 5553 -327 3 1296 726 251 40 40 chr9 93298855 93299108 -30777064 - RLTR15 LTR ERVK -95 264 12 3 1296 982 266 11 7 chr9 93299141 93299421 -30776751 + Lx7 LINE L1 5616 5896 -1800 3 1296 305 155 98 57 chr9 93299585 93299708 -30776464 - Lx9 LINE L1 -2 7642 7515 3 1296 246 200 50 0 chr9 93299779 93299839 -30776333 - Lx9 LINE L1 -196 7448 7386 3 1296 677 306 57 77 chr9 93299854 93300350 -30775822 - Lx8 LINE L1 -851 6622 6137 3 1296 856 288 73 7 chr9 93300638 93300911 -30775261 - Lx8 LINE L1 -798 6675 6385 3 1296 858 236 35 0 chr9 93301874 93302077 -30774095 - B3 SINE B2 -5 211 2 4 1296 570 103 0 0 chr9 93302163 93302250 -30773922 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1296 434 283 125 57 chr9 93302250 93302426 -30773746 - B3 SINE B2 -28 188 1 4 1296 3437 167 241 1 chr9 93302887 93303606 -30772566 - RMER19B LTR ERVK -10 892 2 4 1296 343 202 21 0 chr9 93303729 93303823 -30772349 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 4 1296 1051 344 52 12 chr9 93303914 93304819 -30771353 - Lx9 LINE L1 -204 7269 6321 4 1296 237 196 18 0 chr9 93304871 93304927 -30771245 - L1MA6 LINE L1 -124 6176 6120 4 1296 5396 43 0 6 chr9 93305003 93305660 -30770512 - L1Md_F2 LINE L1 -8 6574 5922 4 1296 210 295 16 47 chr9 93306415 93306479 -30769693 - B3A SINE B2 -136 62 1 4 1296 270 309 7 42 chr9 93307083 93307225 -30768947 + CT-rich Low_complexity Low_complexity 4 140 0 4 1296 21 57 0 0 chr9 93307237 93307272 -30768900 + AT_rich Low_complexity Low_complexity 1 35 0 4 1296 23 0 0 0 chr9 93308035 93308058 -30768114 + AT_rich Low_complexity Low_complexity 1 23 0 4 1296 1288 81 40 0 chr9 93308247 93308421 -30767751 - B2_Mm2 SINE B2 -14 181 1 4 1296 1310 246 65 25 chr9 93308421 93308778 -30767394 - RMER19C LTR ERVK -22 589 218 4 1296 11102 56 2 0 chr9 93308824 93310996 -30765176 - L1Md_F2 LINE L1 0 6582 4407 4 1296 390 216 21 25 chr9 93311027 93311170 -30765002 - RMER19C LTR ERVK -502 235 36 4 1296 288 0 0 0 chr9 93312305 93312337 -30763835 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1296 344 333 59 0 chr9 93312371 93312524 -30763648 - RMER15 LTR ERVL -15 560 399 4 1296 374 378 6 35 chr9 93312969 93313139 -30763033 - RSINE1 SINE B4 0 165 1 4 1296 1123 78 0 0 chr9 93313218 93313359 -30762813 + B1_Mus1 SINE Alu 2 142 -6 4 1296 214 127 0 73 chr9 93313364 93313432 -30762740 + A-rich Low_complexity Low_complexity 4 66 0 4 1296 198 0 108 0 chr9 93314921 93314958 -30761214 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 4 1296 2750 86 8 18 chr9 93315577 93315970 -30760202 + L1_Mus3 LINE L1 6249 6637 -1 4 1296 310 248 80 62 chr9 93316186 93316344 -30759828 + B1F SINE Alu 1 148 -1 4 1296 426 53 0 0 chr9 93316368 93316425 -30759747 + (CCAA)n Simple_repeat Simple_repeat 3 59 0 4 1296 547 293 72 69 chr9 93316447 93316963 -30759209 + L1MC2 LINE L1 5289 5799 -2196 4 1296 7260 135 23 9 chr9 93317134 93318341 -30757831 + Lx2 LINE L1 5774 6997 0 4 1296 318 261 104 138 chr9 93318597 93318828 -30757344 + L1MC2 LINE L1 6097 6319 -25 4 1296 532 254 87 0 chr9 93318833 93318971 -30757201 - Lx5 LINE L1 -634 6416 6267 4 1296 522 264 60 22 chr9 93320017 93320199 -30755973 - Lx8 LINE L1 -645 6828 6640 4 1296 412 261 83 16 chr9 93320756 93320877 -30755295 + ID_B1 SINE B4 86 214 -10 4 1296 378 0 0 0 chr9 93320890 93320932 -30755240 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1296 531 0 0 0 chr9 93321096 93321155 -30755017 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1296 833 345 128 27 chr9 93321306 93321985 -30754187 + Lx8 LINE L1 6476 7235 -238 4 1296 213 65 0 0 chr9 93321985 93322016 -30754156 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4 1296 833 345 128 27 chr9 93322016 93322084 -30754088 + Lx8 LINE L1 7236 7299 -174 4 1296 3172 127 45 6 chr9 93322213 93322728 -30753444 + Lx3_Mus LINE L1 6473 7007 -2 4 1296 31 26 0 0 chr9 93322728 93322766 -30753406 + AT_rich Low_complexity Low_complexity 1 38 0 4 20 14411 72 30 0 chr9 93322795 93325017 -30751155 - L1Md_F2 LINE L1 -500 6082 3788 4 1297 3636 86 4 20 chr9 93325017 93325525 -30750647 + L1Md_F2 LINE L1 6080 6579 -3 4 1297 216 367 11 11 chr9 93326617 93326708 -30749464 + L4 LINE RTE 1648 1738 -291 4 1297 414 0 0 0 chr9 93327097 93327143 -30749029 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1297 184 238 12 12 chr9 93328238 93328323 -30747849 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 4 1297 450 0 0 0 chr9 93328326 93328376 -30747796 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1297 226 300 17 0 chr9 93329226 93329286 -30746886 + B4 SINE B4 83 143 -149 4 1297 321 290 36 36 chr9 93329234 93329345 -30746827 + PB1D10 SINE Alu 7 117 0 4 1297 31904 40 1 0 chr9 93329632 93335897 -30740275 + L1Md_T LINE L1 1 5589 -297 4 1297 8993 5 0 0 chr9 93335897 93336893 -30739279 + L1Md_T LINE L1 5590 6585 0 4 1297 234 0 0 0 chr9 93336903 93336929 -30739243 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1297 229 390 48 8 chr9 93337732 93337856 -30738316 + MIR3 SINE MIR 76 204 -4 4 1297 686 326 0 32 chr9 93338323 93338510 -30737662 + B3A SINE B2 2 182 -16 4 1297 32674 88 8 3 chr9 93340631 93345204 -30730968 - L1Md_F2 LINE L1 -14 6568 1969 4 1297 261 0 0 0 chr9 93345204 93345233 -30730939 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1297 32674 106 26 12 chr9 93345233 93346611 -30729561 - L1Md_F2 LINE L1 -3915 1968 575 4 1297 414 0 0 0 chr9 93347188 93347234 -30728938 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1297 186 318 74 9 chr9 93347363 93347471 -30728701 + L3 LINE CR1 3828 3942 -547 4 1297 4580 185 15 31 chr9 93348486 93349406 -30726766 + Lx2 LINE L1 6093 6997 0 4 1297 281 231 20 24 chr9 93349857 93350118 -30726054 + GA-rich Low_complexity Low_complexity 1 259 0 4 1297 4250 141 67 30 chr9 93350487 93351260 -30724912 + Lx2A1 LINE L1 6207 7008 0 4 1297 3836 269 47 13 chr9 93351946 93353002 -30723170 + Lx6 LINE L1 6367 7458 -2 4 1297 304 339 104 72 chr9 93353208 93353473 -30722699 - MLT1I LTR MaLR -81 330 73 4 1297 251 220 17 0 chr9 93354105 93354164 -30722008 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 4 1297 382 298 76 16 chr9 93355893 93356077 -30720095 + Tigger1 DNA MER2_type 2192 2386 -32 4 1297 459 260 9 46 chr9 93356299 93356408 -30719764 + MT2A LTR ERVL 348 452 -81 4 1297 305 385 74 17 chr9 93356722 93357018 -30719154 + MLT1A0 LTR MaLR 47 359 -6 4 1297 703 255 66 73 chr9 93357072 93357360 -30718812 + Lx8 LINE L1 6754 7039 -434 4 1297 26 0 0 0 chr9 93358411 93358437 -30717735 + AT_rich Low_complexity Low_complexity 1 26 0 4 1297 3505 103 2 0 chr9 93358437 93358920 -30717252 - L1_Mus1 LINE L1 -42 5841 5358 4 1297 5163 88 6 66 chr9 93358920 93359734 -30716438 + L1_Mus1 LINE L1 5824 6567 0 4 1297 201 74 0 0 chr9 93359892 93359919 -30716253 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1297 247 94 75 0 chr9 93359927 93359980 -30716192 - L1_Mus3 LINE L1 -4 6634 6578 4 1297 462 18 0 0 chr9 93360042 93360097 -30716075 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 4 1297 572 227 29 41 chr9 93360680 93360836 -30715336 + B1_Mur4 SINE Alu 1 150 0 4 1297 32 0 0 0 chr9 93360845 93360877 -30715295 + AT_rich Low_complexity Low_complexity 1 32 0 4 1297 459 329 62 19 chr9 93361124 93361546 -30714626 - L1MA6 LINE L1 -66 6234 5795 4 1297 2841 174 54 41 chr9 93362024 93362655 -30713517 - RMER6C LTR ERVK -51 639 1 4 1297 729 314 4 4 chr9 93363301 93363563 -30712609 - L1_Mur3 LINE L1 -107 5773 5512 4 1297 931 97 7 58 chr9 93363566 93363720 -30712452 + B1_Mus1 SINE Alu 2 147 -1 4 1297 1392 56 0 0 chr9 93363743 93363921 -30712251 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 1297 693 172 0 0 chr9 93363924 93364104 -30712068 + GA-rich Low_complexity Low_complexity 1 180 0 4 1297 211 40 0 0 chr9 93364104 93364129 -30712043 + (GGA)n Simple_repeat Simple_repeat 2 26 0 4 1297 682 257 33 27 chr9 93364129 93364430 -30711742 - L1_Mur3 LINE L1 -358 5522 5199 4 1297 22 88 0 0 chr9 93364517 93364574 -30711598 + AT_rich Low_complexity Low_complexity 1 57 0 4 1297 386 364 5 20 chr9 93366091 93366290 -30709882 - L1_Mur3 LINE L1 -234 5646 5451 4 1297 816 141 0 0 chr9 93366290 93366425 -30709747 + (TTTC)n Simple_repeat Simple_repeat 3 137 0 4 1297 435 231 49 0 chr9 93366427 93366566 -30709606 - L1_Mur3 LINE L1 -382 5465 5312 4 1297 734 242 0 43 chr9 93366559 93366745 -30709427 - RMER1B Other Other -210 856 679 4 1297 566 141 119 62 chr9 93366747 93366926 -30709246 + RMER1B Other Other 799 1055 -11 4 1297 384 249 15 215 chr9 93366997 93367275 -30708897 - Lx6 LINE L1 0 7696 7489 4 1297 492 226 9 0 chr9 93367275 93367390 -30708782 - Lx6 LINE L1 -10 7450 7335 4 1297 455 235 321 119 chr9 93367390 93367733 -30708439 - Lx6 LINE L1 -237 7223 6824 4 1297 1096 303 38 75 chr9 93367729 93368418 -30707754 - L1_Mur3 LINE L1 -579 5301 4639 4 1297 189 107 0 0 chr9 93368425 93368453 -30707719 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1297 316 303 177 42 chr9 93368519 93369091 -30707081 - L1_Mur3 LINE L1 -3413 2467 1819 4 1297 6879 10 0 0 chr9 93369355 93370127 -30706045 - L1Md_A LINE L1 0 6582 5811 4 1297 5963 15 0 0 chr9 93370127 93370806 -30705366 + L1Md_A LINE L1 5101 5779 -104 4 1297 345 410 14 14 chr9 93372399 93372607 -30703565 + MLT1J2 LTR MaLR 1 208 -240 4 1297 1093 75 7 0 chr9 93372954 93373101 -30703071 + B1_Mus1 SINE Alu 1 148 0 4 1297 198 118 0 0 chr9 93373104 93373138 -30703034 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1297 21 0 0 0 chr9 93373276 93373297 -30702875 + AT_rich Low_complexity Low_complexity 1 21 0 4 1297 27 0 0 0 chr9 93373452 93373479 -30702693 + AT_rich Low_complexity Low_complexity 1 27 0 4 1297 440 367 12 12 chr9 93373646 93373889 -30702283 - Tigger5 DNA MER2_type -4 2402 2160 4 1297 566 366 31 31 chr9 93373902 93374190 -30701982 + B4A SINE B4 5 292 0 4 1297 756 325 36 36 chr9 93374202 93374480 -30701692 - Tigger5 DNA MER2_type -2128 278 1 4 1297 185 353 58 23 chr9 93374735 93374822 -30701350 + MER5A DNA MER1_type 26 115 -74 4 1297 853 84 8 0 chr9 93374833 93374952 -30701220 - B1_Mus1 SINE Alu -28 120 1 4 1297 203 254 0 0 chr9 93375065 93375120 -30701052 + A-rich Low_complexity Low_complexity 6 60 0 4 1297 268 350 12 36 chr9 93375633 93375716 -30700456 + RSINE1 SINE B4 66 146 -19 4 1297 198 91 0 0 chr9 93377051 93377084 -30699088 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1297 571 366 14 9 chr9 93377144 93377362 -30698810 - Tigger5 DNA MER2_type -2164 242 24 4 1297 4469 69 2 2 chr9 93377669 93378250 -30697922 - L1Md_F2 LINE L1 -19 6563 5983 4 1297 4432 62 2 7 chr9 93378250 93378932 -30697240 + L1Md_F2 LINE L1 5297 5976 -608 4 1297 221 146 21 0 chr9 93379856 93379904 -30696268 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1297 534 16 0 0 chr9 93379904 93379967 -30696205 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1297 25 51 0 0 chr9 93381805 93381844 -30694328 + AT_rich Low_complexity Low_complexity 1 39 0 4 1297 7135 156 58 9 chr9 93381847 93383430 -30692742 - Lx3C LINE L1 -2 6974 5320 5 1297 1412 118 57 8 chr9 93383421 93383668 -30692504 - Lx3C LINE L1 -1631 4255 3997 5 1297 1291 150 25 4 chr9 93383729 93383955 -30692217 + ORR1A2 LTR MaLR 1 265 -129 5 1297 1011 61 0 0 chr9 93384206 93384337 -30691835 + (TTC)n Simple_repeat Simple_repeat 2 132 0 5 1297 424 341 40 11 chr9 93384879 93385054 -30691118 + MTD LTR MaLR 1 180 -239 5 1297 301 374 23 58 chr9 93385160 93385333 -30690839 - B4A SINE B4 -119 173 7 5 1297 798 201 115 58 chr9 93387928 93388171 -30688001 + RMER1B Other Other 4 260 -806 5 1297 678 275 79 20 chr9 93388676 93388928 -30687244 - Lx9 LINE L1 -244 7400 7134 5 1297 7390 97 4 0 chr9 93388937 93390527 -30685645 - L1_Mus1 LINE L1 0 6567 4969 5 1297 248 222 37 0 chr9 93390577 93390631 -30685541 + RSINE1 SINE B4 85 140 -25 5 1297 305 336 104 31 chr9 93390694 93390983 -30685189 + L1M2 LINE L1 4425 4734 -1409 5 1297 210 91 0 0 chr9 93391117 93391150 -30685022 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1297 428 136 0 11 chr9 93391155 93391244 -30684928 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1297 426 85 0 0 chr9 93391255 93391314 -30684858 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1297 226 371 0 8 chr9 93391314 93391439 -30684733 + L1M2 LINE L1 4884 5007 -1136 5 1297 1056 95 0 0 chr9 93391454 93391591 -30684581 + B1_Mus2 SINE Alu 1 137 -10 5 1297 393 22 0 0 chr9 93391591 93391637 -30684535 + (TAA)n Simple_repeat Simple_repeat 2 47 0 5 1297 368 273 79 21 chr9 93391714 93391959 -30684213 + L1M2 LINE L1 5075 5354 -789 5 1297 429 20 0 0 chr9 93393611 93393661 -30682511 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1297 401 324 56 17 chr9 93394227 93394406 -30681766 - L2 LINE L2 -1306 2113 1928 5 1297 238 319 110 9 chr9 93394718 93394936 -30681236 - L1MA9 LINE L1 -54 6258 6019 5 1297 326 273 13 0 chr9 93396050 93396127 -30680045 + Lx8 LINE L1 7243 7320 -153 5 1297 669 275 271 3 chr9 93396203 93396517 -30679655 + MTD LTR MaLR 20 417 -2 5 1297 456 295 101 58 chr9 93396827 93397255 -30678917 - L1MA9 LINE L1 -391 5921 5476 5 1297 240 336 35 17 chr9 93397264 93397379 -30678793 - Lx8 LINE L1 -4 7469 7353 5 1297 342 0 0 0 chr9 93397384 93397422 -30678750 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1297 576 0 0 0 chr9 93397422 93397485 -30678687 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1297 3200 287 36 10 chr9 93397490 93398461 -30677711 - Lx8 LINE L1 -187 7286 6291 5 1297 744 244 63 12 chr9 93398661 93398965 -30677207 - Lx8 LINE L1 -1476 5997 5630 5 1297 288 235 166 51 chr9 93399022 93399197 -30676975 + L1_Rod LINE L1 4101 4295 -1552 5 1297 305 330 20 0 chr9 93400754 93400854 -30675318 + MTE2b LTR MaLR 1 102 -277 5 1297 585 293 48 13 chr9 93400860 93401171 -30675001 + L1_Mur3 LINE L1 2332 2653 -3227 5 1297 674 293 100 67 chr9 93401182 93401468 -30674704 - L1M2 LINE L1 -2648 3495 3221 5 1297 3484 173 38 20 chr9 93401468 93402151 -30674021 - Lx2B LINE L1 -3 6997 6303 5 1297 674 293 100 67 chr9 93402151 93402405 -30673767 - L1M2 LINE L1 -2923 3220 2937 5 1297 5383 218 29 41 chr9 93402618 93402752 -30673420 + L1_Mur3 LINE L1 4514 4632 -1248 5 1297 207 0 0 0 chr9 93402752 93402775 -30673397 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1297 5383 218 29 41 chr9 93402775 93404017 -30672155 + L1_Mur3 LINE L1 4633 5873 -7 5 1297 1297 269 19 37 chr9 93404014 93404389 -30671783 + Lx7 LINE L1 6805 7172 -524 5 1297 1548 258 26 45 chr9 93404522 93404945 -30671227 + MTD LTR MaLR 5 419 0 5 1297 491 288 118 42 chr9 93404948 93405278 -30670894 + L1_Rod LINE L1 5257 5611 -236 5 1297 2350 289 67 22 chr9 93405513 93406403 -30669769 + Lx8 LINE L1 6229 7158 -315 5 1297 1510 228 20 3 chr9 93407138 93407437 -30668735 - RMER19C LTR ERVK 0 611 308 5 1297 477 118 0 0 chr9 93407462 93407520 -30668652 + (TCC)n Simple_repeat Simple_repeat 3 60 0 5 1297 627 14 0 0 chr9 93407520 93407592 -30668580 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1297 477 118 0 0 chr9 93407592 93407609 -30668563 + (TCC)n Simple_repeat Simple_repeat 1 17 0 5 1297 266 0 0 29 chr9 93407609 93407644 -30668528 + (CCA)n Simple_repeat Simple_repeat 2 35 0 5 1297 21903 87 5 9 chr9 93407646 93409057 -30667115 - L1Md_F LINE L1 -1500 4383 2965 5 1297 4093 104 2 13 chr9 93409057 93409660 -30666512 + L1Md_F2 LINE L1 5968 6563 -19 5 1297 21903 101 24 7 chr9 93409660 93412217 -30663955 - L1Md_F LINE L1 -2919 2964 374 5 1297 1036 93 0 50 chr9 93413839 93414020 -30662152 + L1_Mus2 LINE L1 6395 6566 0 5 1297 297 0 0 0 chr9 93415452 93415485 -30660687 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1297 380 139 0 12 chr9 93415516 93415596 -30660576 + CT-rich Low_complexity Low_complexity 2 80 0 5 1297 24 0 0 0 chr9 93415764 93415788 -30660384 + AT_rich Low_complexity Low_complexity 1 24 0 5 1297 267 263 143 31 chr9 93416420 93416518 -30659654 + PB1D7 SINE Alu 3 111 -9 5 1297 241 228 43 21 chr9 93416531 93416625 -30659547 + A-rich Low_complexity Low_complexity 5 100 0 5 1297 216 0 0 0 chr9 93417113 93417137 -30659035 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1297 28 61 0 0 chr9 93417309 93417358 -30658814 + AT_rich Low_complexity Low_complexity 1 49 0 5 1297 3476 268 57 26 chr9 93417431 93418551 -30657621 - Lx9 LINE L1 -161 7483 6329 5 1297 1027 221 48 36 chr9 93418561 93418862 -30657310 - L1_Mur2 LINE L1 -34 5852 5525 5 1297 21 0 0 0 chr9 93419429 93419450 -30656722 + AT_rich Low_complexity Low_complexity 1 21 0 5 1297 365 202 10 48 chr9 93421202 93421306 -30654866 - L1_Mur2 LINE L1 -536 5341 5242 5 1297 302 143 0 0 chr9 93421309 93421351 -30654821 - L1_Mur2 LINE L1 -1171 4706 4665 5 1297 378 69 17 0 chr9 93421351 93421409 -30654763 + L1_Mm LINE L1 5369 5427 -456 5 1297 3176 170 17 9 chr9 93421411 93421988 -30654184 - Lx3_Mus LINE L1 -631 5246 4665 5 1297 2565 172 0 132 chr9 93421991 93422434 -30653738 + Lx3_Mus LINE L1 5375 5785 -101 5 1297 6019 123 21 10 chr9 93422434 93423400 -30652772 + Lx3_Mus LINE L1 6026 7001 -8 5 1297 2565 200 8 136 chr9 93423400 93423739 -30652433 + Lx3_Mus LINE L1 5783 6083 -926 5 1297 840 102 0 0 chr9 93424036 93424154 -30652018 - B1_Mus1 SINE Alu 0 148 31 5 1297 23 0 0 0 chr9 93424400 93424423 -30651749 + AT_rich Low_complexity Low_complexity 1 23 0 5 1297 36 23 0 0 chr9 93425547 93425590 -30650582 + AT_rich Low_complexity Low_complexity 1 43 0 5 1297 821 107 130 0 chr9 93425590 93425721 -30650451 - B1_Mus1 SINE Alu 0 148 1 5 1297 1785 110 70 14 chr9 93426114 93426399 -30649773 - Lx LINE L1 0 6654 6354 5 1297 484 265 8 0 chr9 93428080 93428212 -30647960 - Lx2B LINE L1 0 7000 6868 5 1297 289 293 109 48 chr9 93428379 93428526 -30647646 + MER102b DNA MER1_type 29 184 -157 5 1297 626 347 22 8 chr9 93429071 93429338 -30646834 + Lx8 LINE L1 6552 6822 -651 5 1297 243 0 0 0 chr9 93429753 93429780 -30646392 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1297 423 0 0 0 chr9 93429780 93429826 -30646346 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1297 419 118 0 13 chr9 93430800 93430877 -30645295 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 1297 618 60 0 0 chr9 93430877 93430960 -30645212 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1297 883 341 19 19 chr9 93430962 93431231 -30644941 - B4 SINE B4 -23 269 1 5 1297 6346 165 29 15 chr9 93433127 93434314 -30641858 - Lx2B LINE L1 -5 6995 5793 5 1297 618 120 33 0 chr9 93434317 93434409 -30641763 + L1_Mus3 LINE L1 5809 5903 -735 5 1297 3894 165 43 42 chr9 93434404 93435232 -30640940 - L1_Mur2 LINE L1 -518 5359 4531 5 1297 11073 73 3 1 chr9 93435280 93437449 -30638723 - L1Md_F2 LINE L1 -11 6571 4397 5 1297 7636 57 5 0 chr9 93437447 93438442 -30637730 + L1Md_F2 LINE L1 3329 4328 -1555 5 1297 526 157 0 0 chr9 93438442 93438531 -30637641 - B1_Mus2 SINE Alu 0 147 59 5 1297 214 26 51 26 chr9 93439800 93439839 -30636333 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 5 1297 1100 88 0 13 chr9 93439839 93439989 -30636183 - B1_Mus1 SINE Alu 0 148 1 5 1297 2892 134 4 4 chr9 93440090 93440527 -30635645 + Lx3A LINE L1 6529 6965 -16 5 1297 408 40 0 0 chr9 93440527 93440577 -30635595 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 5 1297 2892 134 4 4 chr9 93440577 93440590 -30635582 + Lx3A LINE L1 6966 6978 -3 5 1297 223 342 65 49 chr9 93441040 93441163 -30635009 + RSINE1 SINE B4 3 127 -38 5 1297 423 289 151 0 chr9 93441325 93441484 -30634688 + B3 SINE B2 34 216 0 5 1297 2321 146 0 18 chr9 93442698 93442722 -30633450 + L1_Mm LINE L1 4964 4981 -902 5 1297 2320 85 43 0 chr9 93442722 93443050 -30633122 - L1_Mus3 LINE L1 -3 6635 6294 5 1297 2321 146 0 18 chr9 93443050 93443423 -30632749 + L1_Mm LINE L1 4982 5354 -529 5 1297 465 19 0 0 chr9 93443423 93443477 -30632695 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 5 1297 198 143 0 0 chr9 93443477 93443512 -30632660 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1297 2251 176 25 2 chr9 93443587 93444036 -30632136 - Lx3C LINE L1 -708 6268 5810 5 1297 4012 162 10 6 chr9 93444060 93444757 -30631415 + Lx4B LINE L1 5105 5804 -82 5 1297 707 157 14 43 chr9 93444758 93444898 -30631274 - B1_Mur4 SINE Alu 0 150 15 5 1297 548 106 27 180 chr9 93444910 93444961 -30631211 + Lx4B LINE L1 5750 5792 -1266 5 1297 1026 106 0 0 chr9 93444961 93445102 -30631070 + B1_Mus2 SINE Alu 1 141 -6 5 1297 401 0 20 0 chr9 93445104 93445153 -30631019 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 5 1297 1135 101 17 0 chr9 93445162 93445341 -30630831 + L1_Mus3 LINE L1 6452 6633 -5 5 1297 548 106 27 180 chr9 93445341 93445426 -30630746 + Lx4B LINE L1 5793 5876 -1182 5 1297 1401 256 137 24 chr9 93445408 93445869 -30630303 + Lx2B LINE L1 6486 6998 -2 5 1297 314 98 20 0 chr9 93446016 93446067 -30630105 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1297 363 320 202 14 chr9 93446132 93446499 -30629673 + L1MC LINE L1 3533 3968 -2178 5 1297 297 307 36 44 chr9 93448186 93448411 -30627761 - L1MA10 LINE L1 -7 6327 6105 5 1297 216 97 0 0 chr9 93448796 93448827 -30627345 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1297 446 262 61 18 chr9 93449717 93449880 -30626292 - RMER5 LTR ERV1 -8 526 357 5 1297 632 288 91 45 chr9 93450395 93450726 -30625446 - RMER5 LTR ERV1 -188 346 1 5 1297 225 0 0 0 chr9 93451004 93451029 -30625143 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5 1297 528 59 0 0 chr9 93451177 93451245 -30624927 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1297 296 321 48 48 chr9 93451816 93451963 -30624209 + MER5A1 DNA MER1_type 2 148 -18 5 1297 414 0 0 0 chr9 93452121 93452167 -30624005 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1297 293 260 20 59 chr9 93452472 93452574 -30623598 - Lx6 LINE L1 -599 6861 6764 5 1297 533 15 0 15 chr9 93452768 93452835 -30623337 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 1297 277 333 50 25 chr9 93453420 93453500 -30622672 + B4A SINE B4 4 85 -207 5 1297 360 0 0 0 chr9 93453578 93453618 -30622554 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1298 287 298 104 9 chr9 93455502 93455617 -30620555 - MT2A LTR ERVL -373 160 35 6 1298 249 316 86 109 chr9 93455531 93455659 -30620513 - MTE2b LTR MaLR -248 131 7 6 1298 897 317 68 48 chr9 93455660 93455966 -30620206 - MERVL_2A-int LTR ERVL -10 5747 5419 6 1298 231 61 0 0 chr9 93455966 93455999 -30620173 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1298 961 249 55 63 chr9 93455999 93456339 -30619833 - MERVL_2A-int LTR ERVL -285 5476 5088 6 1298 2035 270 26 38 chr9 93456334 93456911 -30619261 - MERVL_2A-int LTR ERVL -997 4764 4195 6 1298 5043 281 80 36 chr9 93456906 93459102 -30617070 - MERVL_2A-int LTR ERVL -2064 3697 1290 6 1298 611 324 88 47 chr9 93459239 93459775 -30616397 - MTD-int LTR MaLR -331 927 261 6 1298 663 209 46 8 chr9 93459775 93459905 -30616267 - B1_Mus2 SINE Alu -8 139 5 6 1298 611 345 59 83 chr9 93459905 93460054 -30616118 - MTD-int LTR MaLR -998 260 125 6 1298 2435 227 41 6 chr9 93460049 93460542 -30615630 - RLTR12B LTR ERVK -8 520 11 6 1298 256 315 23 38 chr9 93460550 93460682 -30615490 - MTD-int LTR MaLR -1128 130 1 6 1298 638 266 23 46 chr9 93460682 93460795 -30615377 - MTD LTR MaLR -14 405 269 6 1298 2842 49 0 0 chr9 93460795 93461141 -30615031 + ORR1A1 LTR MaLR 1 346 0 6 1298 638 266 22 43 chr9 93461141 93461225 -30614947 - MTD LTR MaLR -110 309 225 6 1298 1103 294 95 0 chr9 93461241 93461567 -30614605 - MT2A LTR ERVL -176 357 1 6 1298 3537 107 0 26 chr9 93462109 93462654 -30613518 + Lx3A LINE L1 6436 6966 -15 6 1298 330 26 0 0 chr9 93462654 93462693 -30613479 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 6 1298 2660 299 43 26 chr9 93462767 93463718 -30612454 + Lx8 LINE L1 6176 7142 -331 6 1298 423 0 0 0 chr9 93464593 93464640 -30611532 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1298 2871 141 28 32 chr9 93464870 93465370 -30610802 + Lx LINE L1 6142 6639 -15 6 1298 181 140 23 23 chr9 93465393 93465437 -30610735 + GA-rich Low_complexity Low_complexity 5 48 0 6 1298 450 0 0 0 chr9 93465644 93465694 -30610478 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1298 241 287 117 56 chr9 93465783 93465819 -30610353 + MER99 DNA hAT? 2 36 -795 6 1298 2222 106 36 3 chr9 93465819 93466151 -30610021 + L1_Mus3 LINE L1 6290 6632 -6 6 1298 241 287 117 56 chr9 93466151 93466277 -30609895 + MER99 DNA hAT? 37 180 -651 6 1298 1136 124 0 21 chr9 93466277 93466467 -30609705 + Lx LINE L1 6464 6649 -5 6 1298 241 287 117 56 chr9 93466467 93466517 -30609655 + MER99 DNA hAT? 181 226 -605 6 1298 202 224 20 0 chr9 93466738 93466787 -30609385 + (CATA)n Simple_repeat Simple_repeat 4 53 0 6 1298 940 315 50 26 chr9 93466884 93467536 -30608636 - L1MA6 LINE L1 -471 5829 5113 6 1298 324 120 0 0 chr9 93467536 93467586 -30608586 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 6 1298 862 324 78 58 chr9 93467586 93467757 -30608415 - L1MA6 LINE L1 -735 5112 4936 6 1298 387 0 0 0 chr9 93467757 93467800 -30608372 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1298 492 18 0 0 chr9 93467800 93467856 -30608316 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1298 862 324 78 58 chr9 93467856 93467950 -30608222 - L1MA6 LINE L1 -912 4935 4825 6 1298 3695 110 29 4 chr9 93467990 93468539 -30607633 - L1Md_F2 LINE L1 -54 5829 5267 6 1298 6982 132 16 30 chr9 93468520 93470389 -30605783 - L1Md_F2 LINE L1 -14 6568 4733 6 1298 5273 91 7 6 chr9 93470389 93471121 -30605051 + L1_Mus1 LINE L1 5833 6565 -2 6 1298 527 272 45 40 chr9 93471581 93471757 -30604415 + Lx7 LINE L1 5382 5558 -322 6 1298 552 359 42 5 chr9 93471780 93471973 -30604199 + B3 SINE B2 8 207 -9 6 1298 747 300 104 11 chr9 93472001 93472345 -30603827 + Lx7 LINE L1 5587 5959 -1685 6 1298 1176 265 97 21 chr9 93472401 93472740 -30603432 - MTD LTR MaLR -12 407 43 6 1298 180 0 0 0 chr9 93472746 93472766 -30603406 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1298 985 359 48 21 chr9 93472806 93473434 -30602738 + Lx8 LINE L1 6578 7222 -251 6 1298 495 318 34 29 chr9 93473533 93473737 -30602435 - Lx8 LINE L1 -987 6486 6282 6 1298 516 301 77 12 chr9 93473749 93474008 -30602164 - Lx8 LINE L1 -212 5668 5393 6 1298 29 70 0 0 chr9 93474235 93474292 -30601880 + AT_rich Low_complexity Low_complexity 1 57 0 6 1298 202 200 0 35 chr9 93474416 93474473 -30601699 + (TTAAA)n Simple_repeat Simple_repeat 3 57 0 6 1298 180 176 0 0 chr9 93474695 93474729 -30601443 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1298 22 0 0 0 chr9 93474772 93474794 -30601378 + AT_rich Low_complexity Low_complexity 1 22 0 6 1298 270 0 0 0 chr9 93475189 93475219 -30600953 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1298 1887 207 77 5 chr9 93477641 93478030 -30598142 + MTD LTR MaLR 1 417 -2 6 1298 211 338 15 0 chr9 93478112 93478180 -30597992 + ID4_ SINE ID 11 79 -4 6 1298 1923 296 112 15 chr9 93478322 93479070 -30597102 + Lx8 LINE L1 6279 7099 -374 6 1298 855 262 0 20 chr9 93482429 93482628 -30593544 - MTC LTR MaLR -211 210 16 6 1298 201 172 15 30 chr9 93483331 93483397 -30592775 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1298 270 0 0 0 chr9 93483409 93483439 -30592733 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1298 198 0 0 0 chr9 93483439 93483460 -30592712 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1298 387 0 0 0 chr9 93483460 93483502 -30592670 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1298 3932 157 68 1 chr9 93485446 93486136 -30590036 - RMER19A LTR ERVK 0 737 2 6 1298 243 0 0 0 chr9 93486286 93486313 -30589859 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1298 973 170 71 19 chr9 93486375 93486585 -30589587 - URR1B DNA MER1_type -1 224 4 6 1298 433 326 22 22 chr9 93487144 93487455 -30588717 + Lx8 LINE L1 907 1217 -6511 6 1298 14944 89 8 5 chr9 93487585 93490367 -30585805 - L1Md_F2 LINE L1 -17 6565 3775 6 1298 21 0 0 0 chr9 93490511 93490532 -30585640 + AT_rich Low_complexity Low_complexity 1 21 0 6 1298 351 278 20 13 chr9 93490882 93491035 -30585137 + L1ME2 LINE L1 5706 5859 -305 6 1298 207 167 0 0 chr9 93491615 93491657 -30584515 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1298 2110 342 83 18 chr9 93491678 93493121 -30583051 + Lx8 LINE L1 5916 7452 -21 6 1298 1154 132 16 6 chr9 93494557 93494740 -30581432 - B2_Mm2 SINE B2 -9 186 2 6 1298 396 0 0 0 chr9 93494917 93494961 -30581211 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1298 192 152 0 0 chr9 93495106 93495139 -30581033 + A-rich Low_complexity Low_complexity 1 33 0 6 1298 223 240 62 35 chr9 93495165 93495252 -30580920 + MIR SINE MIR 97 183 -79 6 1298 4726 116 50 36 chr9 93496340 93497648 -30578524 - Lx3_Mus LINE L1 -592 6417 5112 6 1298 3237 66 23 0 chr9 93497648 93498086 -30578086 + L1_Mur1 LINE L1 4711 5158 -728 6 1298 1229 27 7 0 chr9 93498236 93498382 -30577790 - B1_Mm SINE Alu 0 147 1 6 1298 306 317 24 0 chr9 93498448 93498530 -30577642 - L1MC1 LINE L1 -312 6021 5938 6 1298 282 292 42 0 chr9 93498544 93498616 -30577556 - ID SINE ID -146 78 4 6 1298 262 287 70 41 chr9 93498636 93498807 -30577365 - L1MC1 LINE L1 -439 5905 5730 6 1298 31 76 0 0 chr9 93499495 93499561 -30576611 + AT_rich Low_complexity Low_complexity 1 66 0 6 1298 289 320 34 23 chr9 93499669 93499845 -30576327 - L1MCa LINE L1 -5147 1361 1184 6 1298 873 76 0 0 chr9 93499868 93499986 -30576186 + (TTTC)n Simple_repeat Simple_repeat 2 119 0 6 1298 4148 144 60 1 chr9 93500066 93500760 -30575412 + Lx2B LINE L1 6259 6993 -7 1 1298 628 276 32 181 chr9 93500783 93501004 -30575168 - B3 SINE B2 -6 210 5 2 1298 305 270 122 0 chr9 93501061 93501135 -30575037 - B1F1 SINE Alu -52 97 15 3 1298 277 335 36 16 chr9 93501445 93501639 -30574533 - L1MCa LINE L1 -5252 793 596 4 1298 365 327 197 31 chr9 93501820 93502180 -30573992 - L1MCa LINE L1 -6073 678 259 4 1298 5393 70 12 10 chr9 93503161 93503907 -30572265 - L1Md_F2 LINE L1 0 6582 5858 5 1298 26 30 0 0 chr9 93504111 93504144 -30572028 + AT_rich Low_complexity Low_complexity 1 33 0 6 1298 1155 123 11 11 chr9 93504255 93504436 -30571736 + B2_Mm2 SINE B2 1 181 -14 7 1298 492 394 33 15 chr9 93505375 93505648 -30570524 + B4A SINE B4 1 278 -14 8 1298 25 51 0 0 chr9 93505806 93505845 -30570327 + AT_rich Low_complexity Low_complexity 1 39 0 9 1298 904 254 20 0 chr9 93505900 93506101 -30570071 + B3 SINE B2 4 208 -8 1 1298 49 43 0 0 chr9 93506109 93506179 -30569993 + AT_rich Low_complexity Low_complexity 1 70 0 1 1298 258 106 0 0 chr9 93507720 93507767 -30568405 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1298 660 321 20 42 chr9 93508197 93508438 -30567734 - MTEa LTR MaLR -2 377 108 1 1298 412 276 38 9 chr9 93508544 93508650 -30567522 - B1F2 SINE Alu -40 109 1 1 1298 31604 81 1 2 chr9 93508751 93513815 -30562357 + L1Md_F3 LINE L1 573 5585 -298 1 1298 7860 51 5 0 chr9 93513816 93514795 -30561377 + L1Md_F3 LINE L1 5587 6570 -14 1 1298 14880 104 3 21 chr9 93515194 93518356 -30557816 + L1_Mus1 LINE L1 3470 6567 0 1 1298 747 98 8 16 chr9 93518480 93518689 -30557483 + L1Md_F2 LINE L1 6442 6582 0 1 1298 1433 52 26 10 chr9 93519017 93519202 -30556970 - MTA_Mm LTR MaLR 0 396 207 1 1298 2895 27 0 3 chr9 93519202 93519540 -30556632 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1298 15392 17 2 0 chr9 93519547 93521353 -30554819 - IAPEz-int LTR ERVK -7 6474 4666 2 1298 25548 32 29 11 chr9 93521343 93524583 -30551589 - IAPEz-int LTR ERVK -3175 3306 8 2 1298 2895 27 0 3 chr9 93524583 93524921 -30551251 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1298 1274 92 82 0 chr9 93524921 93525117 -30551055 - MTA_Mm LTR MaLR -184 212 1 1 1298 484 331 0 0 chr9 93525231 93525352 -30550820 + RSINE1 SINE B4 3 123 -42 2 1298 21 0 0 0 chr9 93525522 93525543 -30550629 + AT_rich Low_complexity Low_complexity 1 21 0 2 1298 1796 213 71 94 chr9 93526270 93526793 -30549379 - RLTR11A LTR ERVK -17 511 1 2 1298 2068 50 4 0 chr9 93527728 93527987 -30548185 - L1Md_A LINE L1 0 6582 6323 2 1298 33 0 0 0 chr9 93527987 93528020 -30548152 + AT_rich Low_complexity Low_complexity 1 33 0 2 1298 4439 31 110 0 chr9 93528020 93528621 -30547551 + L1Md_T LINE L1 5669 6335 -247 2 1298 246 333 98 39 chr9 93528625 93528778 -30547394 - B2_Mm2 SINE B2 -33 162 1 2 1298 189 0 0 0 chr9 93529901 93529922 -30546250 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1298 4172 176 172 11 chr9 93529983 93530869 -30545303 + RLTR25B LTR ERVK 1 1028 0 2 1298 21 114 0 0 chr9 93531925 93532030 -30544142 + AT_rich Low_complexity Low_complexity 1 105 0 3 1298 528 59 0 0 chr9 93533260 93533328 -30542844 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1298 719 324 63 58 chr9 93533450 93533847 -30542325 + MT2A LTR ERVL 135 533 0 3 1298 275 326 72 0 chr9 93533954 93534068 -30542104 - B1F SINE Alu -21 128 1 3 1298 407 223 0 169 chr9 93534609 93534733 -30541439 + B1F SINE Alu 40 142 -7 3 1298 249 200 0 57 chr9 93534686 93534739 -30541433 + ID_B1 SINE B4 174 223 -1 3 1298 252 86 0 0 chr9 93534894 93534929 -30541243 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1298 195 125 0 0 chr9 93535242 93535282 -30540890 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1298 271 341 0 62 chr9 93536721 93536818 -30539354 + PB1D7 SINE Alu 22 112 -37 3 1298 297 337 33 0 chr9 93537239 93537331 -30538841 - PB1D7 SINE Alu -5 115 21 3 1298 326 267 51 17 chr9 93537421 93537539 -30538633 + L1M2 LINE L1 5146 5267 -876 4 1298 301 316 62 19 chr9 93537969 93538130 -30538042 + B4A SINE B4 66 233 -59 4 1298 348 77 0 0 chr9 93538595 93538647 -30537525 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1298 2768 37 3 3 chr9 93539053 93539380 -30536792 + IAPLTR2b LTR ERVK 1 327 0 4 1298 1115 93 10 80 chr9 93539381 93539580 -30536592 + IAPEz-int LTR ERVK 9 193 -6288 4 1298 236 327 0 0 chr9 93539580 93539635 -30536537 + RLTR27 LTR ERVK 221 275 -34 4 1298 860 53 9 0 chr9 93539635 93539749 -30536423 + IAPEz-int LTR ERVK 168 282 -6199 4 1298 50131 33 12 9 chr9 93539752 93546002 -30530170 + IAPEz-int LTR ERVK 211 6479 -2 4 1298 2755 40 3 3 chr9 93546004 93546331 -30529841 + IAPLTR2b LTR ERVK 1 327 0 4 1298 456 12 36 36 chr9 93546397 93546481 -30529691 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 1298 396 0 0 0 chr9 93546850 93546894 -30529278 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 4 1298 28 61 0 0 chr9 93546917 93546966 -30529206 + AT_rich Low_complexity Low_complexity 1 49 0 4 1298 243 0 0 0 chr9 93547320 93547347 -30528825 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 1298 529 319 43 26 chr9 93547818 93548050 -30528122 - L2 LINE L2 -454 2965 2730 4 1298 192 372 62 0 chr9 93548419 93548532 -30527640 - L2 LINE L2 -1553 1866 1747 4 1298 234 0 0 0 chr9 93549478 93549504 -30526668 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1298 597 268 84 17 chr9 93549942 93550219 -30525953 + Lx5 LINE L1 6256 6769 -691 5 1298 4803 148 57 36 chr9 93550229 93550336 -30525836 - RMER12B LTR ERVK -24 1380 1254 5 1298 390 21 0 0 chr9 93550336 93550383 -30525789 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1298 4803 148 57 36 chr9 93550383 93551210 -30524962 - RMER12B LTR ERVK -151 1253 427 5 1298 522 302 157 22 chr9 93551337 93551653 -30524519 + Lx5 LINE L1 6850 7413 -47 5 1298 201 322 0 0 chr9 93552357 93552416 -30523756 + L2a LINE L2 3368 3426 0 5 1298 804 258 5 14 chr9 93553068 93553284 -30522888 + B3 SINE B2 1 214 -2 5 1298 184 355 145 32 chr9 93553461 93553772 -30522400 + L4 LINE RTE 1214 1559 -470 5 1298 1573 192 89 31 chr9 93554266 93554626 -30521546 + ORR1C2 LTR MaLR 1 381 -3 5 1298 456 91 0 0 chr9 93554927 93554993 -30521179 + (GGA)n Simple_repeat Simple_repeat 3 68 0 5 1298 206 82 64 64 chr9 93555113 93555191 -30520981 + T-rich Low_complexity Low_complexity 3 80 0 5 1298 1211 276 20 18 chr9 93556511 93556854 -30519318 + RMER15-int LTR ERVL 2031 2374 -2625 6 1298 659 231 74 11 chr9 93556958 93557133 -30519039 + RMER15-int LTR ERVL 4147 4332 -667 6 1298 40460 14 0 6 chr9 93557192 93563350 -30512822 - L1Md_A LINE L1 0 6582 468 6 1298 1125 257 98 32 chr9 93563353 93563606 -30512566 + RMER15-int LTR ERVL 4405 4676 -323 6 1298 370 0 0 39 chr9 93563606 93563658 -30512514 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 6 1298 1125 240 298 26 chr9 93563658 93563818 -30512354 + RMER15-int LTR ERVL 4677 4878 -121 6 1298 1858 216 29 18 chr9 93563928 93564313 -30511859 + RMER15 LTR ERVL 1 389 -186 6 1298 591 259 11 112 chr9 93564313 93564511 -30511661 + ORR1D1 LTR MaLR 1 193 -166 6 1298 441 0 0 0 chr9 93564511 93564560 -30511612 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1298 274 340 54 54 chr9 93564560 93564607 -30511565 + ORR1D1 LTR MaLR 194 248 -111 6 1298 293 268 10 10 chr9 93564607 93564705 -30511467 + CT-rich Low_complexity Low_complexity 1 98 0 6 1298 713 208 69 151 chr9 93564705 93564937 -30511235 + ORR1C2 LTR MaLR 172 384 0 6 1298 1062 201 5 5 chr9 93564938 93565128 -30511044 + RMER15 LTR ERVL 386 575 0 6 1298 597 178 0 59 chr9 93565230 93565491 -30510681 + GA-rich Low_complexity Low_complexity 1 245 0 6 1298 180 242 108 46 chr9 93565661 93565726 -30510446 - L2 LINE L2 -1398 2021 1953 6 1298 564 257 50 7 chr9 93566566 93566707 -30509465 - B1_Mur2 SINE Alu -1 148 2 6 1298 841 347 96 16 chr9 93566937 93567449 -30508723 + Lx8 LINE L1 6851 7403 -70 7 1298 225 228 72 86 chr9 93567773 93567912 -30508260 + MMSAT4 Satellite Satellite 32 168 0 7 1298 488 258 76 91 chr9 93568466 93568598 -30507574 - B3A SINE B2 -21 174 45 7 1298 1203 261 9 61 chr9 93568598 93568928 -30507244 - RMER19C LTR ERVK 0 611 299 7 1298 207 0 0 0 chr9 93568928 93568951 -30507221 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1298 6491 193 35 20 chr9 93569248 93571304 -30504868 + Lx2B LINE L1 4904 6982 -18 7 1298 231 36 0 0 chr9 93571306 93571334 -30504838 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 7 1298 918 335 39 48 chr9 93571872 93572286 -30503886 - Lx8 LINE L1 -287 7186 6777 7 1298 25 51 0 0 chr9 93572759 93572798 -30503374 + AT_rich Low_complexity Low_complexity 1 39 0 7 1298 522 131 0 0 chr9 93573471 93573570 -30502602 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1298 346 244 22 44 chr9 93573739 93573876 -30502296 - Lx7 LINE L1 -2 7694 7561 8 1298 1405 310 43 6 chr9 93573916 93574399 -30501773 - Lx7 LINE L1 -285 7411 6911 8 1298 3710 98 60 0 chr9 93574397 93575148 -30501024 - L1_Mus3 LINE L1 -603 6035 5243 8 1298 3570 103 63 5 chr9 93575148 93575754 -30500418 + L1_Mus3 LINE L1 6042 6638 0 8 1298 450 0 0 0 chr9 93575767 93575817 -30500355 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1298 3295 267 13 27 chr9 93575822 93576738 -30499434 - Lx7 LINE L1 -776 6920 6018 8 1298 402 21 0 0 chr9 93576747 93576794 -30499378 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1298 21 95 0 0 chr9 93576987 93577050 -30499122 + AT_rich Low_complexity Low_complexity 1 63 0 8 1298 293 276 30 39 chr9 93577060 93577285 -30498887 + L1M3 LINE L1 5354 5560 -743 8 1298 538 157 0 0 chr9 93577294 93577383 -30498789 + Lx2A1 LINE L1 6814 6902 -106 8 1298 489 213 91 18 chr9 93577514 93577624 -30498548 + RMER4A LTR ERVK 36 153 -313 8 1298 753 235 54 2 chr9 93577625 93577832 -30498340 + Lx2B LINE L1 6682 6995 -63 8 1298 495 314 94 36 chr9 93577908 93578027 -30498145 + L1MA6 LINE L1 5692 5814 -486 8 1298 2087 119 0 60 chr9 93578027 93578376 -30497796 - ORR1A4 LTR MaLR 0 329 2 9 1298 495 314 94 36 chr9 93578376 93578616 -30497556 + L1MA6 LINE L1 5815 6072 -228 8 1298 216 0 0 0 chr9 93578820 93578844 -30497328 + (TA)n Simple_repeat Simple_repeat 2 25 0 9 1298 510 273 75 43 chr9 93578845 93579098 -30497074 - L1_Rod LINE L1 -1347 4500 4240 9 1298 216 0 0 0 chr9 93579104 93579128 -30497044 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1298 1480 220 94 8 chr9 93579256 93579627 -30496545 + MTD LTR MaLR 12 414 -5 9 1298 468 311 30 0 chr9 93580472 93580604 -30495568 + RSINE1 SINE B4 8 143 -22 9 1298 557 40 13 0 chr9 93580610 93580686 -30495486 + (CA)n Simple_repeat Simple_repeat 2 78 0 9 1298 364 319 134 0 chr9 93580710 93580829 -30495343 + RSINE1 SINE B4 2 136 -29 9 1298 33 25 0 0 chr9 93581087 93581127 -30495045 + AT_rich Low_complexity Low_complexity 1 40 0 9 1298 539 135 0 10 chr9 93582152 93582249 -30493923 + (TCCC)n Simple_repeat Simple_repeat 1 96 0 9 1298 613 305 37 0 chr9 93582548 93582738 -30493434 + MLT2B2 LTR ERVL 3 199 -316 1 1298 257 228 13 0 chr9 93582938 93583017 -30493155 + CT-rich Low_complexity Low_complexity 3 82 0 1 1298 1572 47 0 0 chr9 93583415 93583608 -30492564 - L1Md_T LINE L1 0 6582 6390 1 1298 4600 58 33 2 chr9 93583608 93584216 -30491956 + L1Md_A LINE L1 285 911 -5813 1 1298 363 247 10 70 chr9 93584524 93584564 -30491608 - B3 SINE B2 -121 95 60 1 1298 543 31 0 0 chr9 93584564 93584629 -30491543 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1298 363 247 10 70 chr9 93584629 93584688 -30491484 - B3 SINE B2 -157 59 2 1 1298 222 37 0 0 chr9 93584877 93584904 -30491268 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1299 584 160 0 8 chr9 93586019 93586139 -30490033 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 1299 497 194 0 0 chr9 93587185 93587278 -30488894 - B2_Mm2 SINE B2 -90 105 13 1 1299 3040 299 69 11 chr9 93587368 93588417 -30487755 - Lx8 LINE L1 -153 7320 6212 1 1299 432 219 50 27 chr9 93588642 93588829 -30487343 + ORR1C2-int LTR MaLR 1127 1369 -1 1 1299 1489 227 49 5 chr9 93588830 93589198 -30486974 + ORR1C2 LTR MaLR 1 384 0 1 1299 24 53 0 0 chr9 93589832 93589870 -30486302 + AT_rich Low_complexity Low_complexity 1 38 0 1 1299 494 378 32 36 chr9 93589871 93590118 -30486054 - B4A SINE B4 -4 288 43 1 1299 278 203 17 0 chr9 93590205 93590264 -30485908 - ID_B1 SINE B4 -1 223 164 1 1299 891 262 64 125 chr9 93590271 93590664 -30485508 - MTE2a LTR MaLR -7 372 4 1 1299 313 271 0 0 chr9 93590680 93590739 -30485433 - B1F2 SINE Alu -88 61 3 1 1299 311 391 0 0 chr9 93590739 93590767 -30485405 - B4A SINE B4 -146 146 60 1 1299 836 261 19 14 chr9 93591543 93591757 -30484415 + B3 SINE B2 1 215 -1 1 1299 1758 322 51 71 chr9 93591987 93592709 -30483463 - ORR1D2-int LTR MaLR -282 1088 381 1 1299 214 68 43 64 chr9 93592784 93592831 -30483341 + T-rich Low_complexity Low_complexity 3 48 0 1 1299 207 0 0 0 chr9 93592834 93592857 -30483315 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1299 221 263 0 0 chr9 93592962 93593019 -30483153 + GA-rich Low_complexity Low_complexity 2 58 0 1 1299 1062 224 93 117 chr9 93593342 93593717 -30482455 - ORR1D2-int LTR MaLR -1003 367 2 1 1299 817 289 72 58 chr9 93593718 93593867 -30482305 - ORR1D2 LTR MaLR 0 370 215 1 1299 5662 96 1 9 chr9 93593867 93594655 -30481517 + Lx3_Mus LINE L1 6228 7009 0 1 1299 817 289 72 58 chr9 93594655 93594868 -30481304 - ORR1D2 LTR MaLR -156 214 3 1 1299 24 0 0 0 chr9 93594920 93594944 -30481228 + AT_rich Low_complexity Low_complexity 1 24 0 1 1299 21 36 0 0 chr9 93595220 93595248 -30480924 + AT_rich Low_complexity Low_complexity 1 28 0 1 1299 2878 23 0 55 chr9 93596035 93596401 -30479771 + ORR1A0 LTR MaLR 1 346 0 1 1299 694 211 18 30 chr9 93596402 93596568 -30479604 - L1_Rod LINE L1 -24 5823 5660 1 1299 3097 255 54 41 chr9 93596558 93596951 -30479221 + Lx9 LINE L1 6621 7012 -632 1 1299 3213 56 5 0 chr9 93596951 93597345 -30478827 + MTA_Mm LTR MaLR 1 396 0 1 1299 8112 78 9 1 chr9 93597346 93598434 -30477738 + MTA_Mm-int LTR MaLR 2 1098 0 1 1299 3146 51 8 0 chr9 93598438 93598827 -30477345 + MTA_Mm LTR MaLR 5 396 0 1 1299 3097 255 54 41 chr9 93598827 93599429 -30476743 + Lx9 LINE L1 7013 7636 -8 1 1299 699 92 0 20 chr9 93599555 93599655 -30476517 + L1_Mus1 LINE L1 5993 6090 -477 1 1299 1667 320 33 8 chr9 93599770 93600407 -30475765 - RMER15-int LTR ERVL -3812 1187 535 1 1299 396 0 0 0 chr9 93600450 93600494 -30475678 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1299 426 53 0 0 chr9 93600790 93600847 -30475325 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1299 21 0 0 0 chr9 93601763 93601784 -30474388 + AT_rich Low_complexity Low_complexity 1 21 0 1 1299 21 0 0 0 chr9 93602087 93602108 -30474064 + AT_rich Low_complexity Low_complexity 1 21 0 1 1299 228 35 0 0 chr9 93602817 93602846 -30473326 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 1 1299 366 292 5 33 chr9 93603501 93603685 -30472487 + (CATA)n Simple_repeat Simple_repeat 1 179 0 1 1299 959 103 7 0 chr9 93604202 93604348 -30471824 + (TC)n Simple_repeat Simple_repeat 2 148 0 1 1299 525 294 87 25 chr9 93604356 93604599 -30471573 - RLTR26 LTR ERVK -289 353 65 1 1299 7021 92 64 9 chr9 93604618 93605838 -30470334 - L1_Mus2 LINE L1 0 6566 5202 1 1299 1259 98 104 0 chr9 93605806 93606043 -30470129 - L1VL4 LINE L1 -2449 1110 844 1 1299 465 34 0 0 chr9 93606043 93606102 -30470070 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1299 1189 98 78 0 chr9 93606102 93606192 -30469980 - L1VL4 LINE L1 -5459 843 738 1 1299 447 210 30 174 chr9 93606228 93606395 -30469777 - L1VL1 LINE L1 -6060 362 220 1 1299 28 0 0 0 chr9 93608453 93608481 -30467691 + AT_rich Low_complexity Low_complexity 1 28 0 1 1299 378 0 0 0 chr9 93609173 93609215 -30466957 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1299 342 0 0 0 chr9 93609305 93609343 -30466829 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1299 207 0 0 0 chr9 93609463 93609486 -30466686 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1299 352 311 116 35 chr9 93609520 93609693 -30466479 + ORR1E LTR MaLR 5 191 -168 1 1299 261 109 0 0 chr9 93609899 93609945 -30466227 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1299 280 367 77 39 chr9 93610318 93610604 -30465568 - LTR80B LTR ERVL -116 468 172 1 1299 8019 53 1 2 chr9 93611069 93612765 -30463407 - L1Md_F2 LINE L1 0 6582 4889 1 1299 21 0 0 0 chr9 93612765 93612786 -30463386 + AT_rich Low_complexity Low_complexity 1 21 0 1 1299 27 29 0 0 chr9 93612830 93612864 -30463308 + AT_rich Low_complexity Low_complexity 1 34 0 1 1299 782 219 36 52 chr9 93613125 93613318 -30462854 + URR1A DNA MER1_type 37 226 0 1 1299 389 340 0 0 chr9 93613366 93613472 -30462700 + B3 SINE B2 105 210 -6 1 1299 264 30 0 0 chr9 93613719 93613752 -30462420 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1299 485 309 55 22 chr9 93613975 93614250 -30461922 - L1_Mur3 LINE L1 -687 5610 5327 1 1299 307 339 59 4 chr9 93614370 93614630 -30461542 + L1_Mur3 LINE L1 4477 4727 -1153 1 1299 24 32 0 0 chr9 93614630 93614661 -30461511 + AT_rich Low_complexity Low_complexity 1 31 0 1 1299 467 358 28 0 chr9 93614681 93614860 -30461312 - ID_B1 SINE B4 -26 198 15 1 1299 223 149 0 41 chr9 93615105 93615154 -30461018 + T-rich Low_complexity Low_complexity 2 48 0 1 1299 2213 55 14 3 chr9 93615165 93615455 -30460717 + L1Md_F3 LINE L1 6292 6584 0 1 1299 492 181 0 42 chr9 93615455 93615552 -30460620 + L1_Mur3 LINE L1 3028 3124 -2756 1 1299 279 0 0 0 chr9 93615552 93615583 -30460589 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1 1299 492 181 0 42 chr9 93615583 93615616 -30460556 + L1_Mur3 LINE L1 3125 3154 -2726 1 1299 3006 86 5 2 chr9 93615616 93616024 -30460148 + L1_Mus1 LINE L1 6159 6567 0 1 1299 492 181 0 42 chr9 93616024 93616036 -30460136 + L1_Mur3 LINE L1 3155 3165 -2715 1 1299 683 250 74 10 chr9 93616121 93616323 -30459849 + B3 SINE B2 1 215 -1 1 1299 25 0 0 0 chr9 93616329 93616354 -30459818 + AT_rich Low_complexity Low_complexity 1 25 0 1 1299 21 0 0 0 chr9 93616496 93616517 -30459655 + AT_rich Low_complexity Low_complexity 1 21 0 1 1299 203 294 0 19 chr9 93616694 93616746 -30459426 - L3 LINE CR1 -1389 3100 3050 1 1299 238 256 0 0 chr9 93616882 93616949 -30459223 - L1_Mur3 LINE L1 -1221 4919 4825 1 1299 342 308 23 148 chr9 93616952 93617332 -30458840 + RMER15 LTR ERVL 4 453 -122 1 1299 984 114 0 0 chr9 93617336 93617485 -30458687 + (TTC)n Simple_repeat Simple_repeat 1 149 0 1 1299 973 399 38 19 chr9 93617613 93618510 -30457662 + RMER15-int LTR ERVL 24 937 -4062 1 1299 871 190 106 21 chr9 93618510 93618713 -30457459 + Lx3C LINE L1 6748 6956 -20 1 1299 388 72 29 0 chr9 93618713 93618782 -30457390 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1299 351 290 161 27 chr9 93618782 93618808 -30457364 + Lx3C LINE L1 6623 6653 -1 1 1299 536 185 0 8 chr9 93618845 93618880 -30457292 + polypurine Low_complexity Low_complexity 2 36 0 1 1299 1065 118 0 0 chr9 93618880 93619058 -30457114 + (GAA)n Simple_repeat Simple_repeat 1 178 0 1 1299 536 185 0 8 chr9 93619058 93619153 -30457019 + GA-rich Low_complexity Low_complexity 37 130 0 1 1299 733 310 9 9 chr9 93619182 93619410 -30456762 + RMER15-int LTR ERVL 965 1192 -3807 1 1299 343 388 20 36 chr9 93619768 93620019 -30456153 + RMER15-int LTR ERVL 1921 2167 -2832 1 1299 1245 321 55 41 chr9 93620236 93620942 -30455230 + RMER15-int LTR ERVL 4258 4973 -26 1 1299 279 287 16 87 chr9 93620942 93621068 -30455104 + RMER15 LTR ERVL 1 117 -458 1 1299 411 278 20 53 chr9 93621084 93621236 -30454936 + RMER15 LTR ERVL 314 460 -115 1 1299 293 314 96 0 chr9 93621533 93621772 -30454400 + L1MA4 LINE L1 5675 5936 -364 1 1299 231 61 0 0 chr9 93621798 93621831 -30454341 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1299 531 0 0 0 chr9 93621834 93621893 -30454279 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1299 561 277 38 48 chr9 93621997 93622257 -30453915 - MTE2a LTR MaLR 0 379 1 1 1299 327 340 52 20 chr9 93622278 93622431 -30453741 + MTD LTR MaLR 30 187 -232 1 1299 27 62 0 0 chr9 93622556 93622604 -30453568 + AT_rich Low_complexity Low_complexity 1 48 0 1 1299 210 224 0 0 chr9 93623078 93623127 -30453045 + (CAT)n Simple_repeat Simple_repeat 2 50 0 1 1299 590 310 20 15 chr9 93623139 93623339 -30452833 - Lx9 LINE L1 -912 6732 6532 1 1299 333 0 0 0 chr9 93623849 93623886 -30452286 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1299 423 92 0 0 chr9 93623887 93623952 -30452220 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1299 296 312 138 13 chr9 93624048 93624207 -30451965 + Lx9 LINE L1 6414 6592 -1052 1 1299 1079 306 98 14 chr9 93624447 93624815 -30451357 + Lx6 LINE L1 7050 7448 -12 1 1299 241 26 0 50 chr9 93624913 93624953 -30451219 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1299 4300 153 41 0 chr9 93625678 93626378 -30449794 + RMER19A LTR ERVK 2 730 -7 1 1299 696 210 107 0 chr9 93626408 93626613 -30449559 - L1_Rod LINE L1 -4191 1656 1430 1 1299 22 0 0 0 chr9 93626625 93626647 -30449525 + AT_rich Low_complexity Low_complexity 1 22 0 1 1299 6251 131 26 5 chr9 93626647 93627656 -30448516 - Lx3A LINE L1 -8 6973 5944 1 1299 2215 68 0 0 chr9 93627653 93627946 -30448226 + L1Md_F2 LINE L1 6290 6582 0 1 1299 406 239 31 110 chr9 93627965 93628092 -30448080 + PB1D10 SINE Alu 1 117 0 1 1299 1521 137 72 3 chr9 93628291 93628584 -30447588 + L1_Mur1 LINE L1 4767 5079 -807 1 1299 685 239 22 9 chr9 93628590 93628820 -30447352 - L1_Rod LINE L1 -4426 1421 1189 1 1299 1131 65 0 0 chr9 93628867 93629006 -30447166 + B1_Mus1 SINE Alu 1 139 -9 1 1299 247 0 25 50 chr9 93629006 93629046 -30447126 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1299 321 326 11 11 chr9 93629085 93629178 -30446994 + MTE2b LTR MaLR 3 95 -284 1 1299 933 282 20 35 chr9 93629184 93629438 -30446734 + MTE2b LTR MaLR 60 309 -70 1 1299 235 309 24 24 chr9 93629485 93629568 -30446604 + MTE2b-int LTR MaLR 1 83 -1497 1 1299 1762 331 186 38 chr9 93629580 93630695 -30445477 + MTE2b-int LTR MaLR 301 1580 0 1 1299 559 276 241 100 chr9 93630698 93631026 -30445146 + MTE2b LTR MaLR 4 377 -2 1 1299 2371 35 0 0 chr9 93631282 93631565 -30444607 + L1Md_A LINE L1 6300 6582 0 2 1299 195 170 0 0 chr9 93631726 93631773 -30444399 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 1299 715 126 8 8 chr9 93631780 93631908 -30444264 + (CATA)n Simple_repeat Simple_repeat 1 128 0 2 1299 387 335 145 60 chr9 93631947 93632395 -30443777 - MLT2B3 LTR ERVL -68 486 1 2 1299 1257 276 120 5 chr9 93632469 93632844 -30443328 + MTD LTR MaLR 2 419 0 2 1299 2772 69 45 8 chr9 93633162 93633544 -30442628 - MTA_Mm LTR MaLR 0 396 1 2 1299 6864 88 82 3 chr9 93633544 93634560 -30441612 - MTA_Mm-int LTR MaLR 0 1098 3 2 1299 1183 110 6 6 chr9 93634564 93634747 -30441425 - MTA_Mm LTR MaLR 0 327 145 2 1299 219 385 109 26 chr9 93634858 93635170 -30441002 + L2 LINE L2 1142 1479 -1940 2 1299 424 298 106 58 chr9 93636039 93636228 -30439944 - B3A SINE B2 0 198 1 2 1299 328 363 30 25 chr9 93637929 93638127 -30438045 - RMER15 LTR ERVL -311 264 66 2 1299 24 0 0 0 chr9 93638175 93638199 -30437973 + AT_rich Low_complexity Low_complexity 1 24 0 2 1299 6483 122 42 20 chr9 93638200 93638963 -30437209 - Lx LINE L1 -5 6649 5876 2 1299 360 0 0 0 chr9 93638963 93639003 -30437169 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1299 6483 129 25 11 chr9 93639003 93639488 -30436684 - Lx LINE L1 -779 5875 5378 2 1299 3234 185 18 6 chr9 93639487 93640117 -30436055 + Lx LINE L1 4748 5384 -499 2 1299 1031 228 5 31 chr9 93640117 93640339 -30435833 - URR1B DNA MER1_type -4 221 6 2 1299 248 246 18 0 chr9 93640407 93640464 -30435708 - RMER15 LTR ERVL -515 60 3 2 1299 730 293 143 21 chr9 93642086 93642145 -30434027 - MER70A LTR ERVL 0 472 412 2 1299 234 0 0 0 chr9 93642145 93642171 -30434001 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1299 730 293 143 21 chr9 93642171 93642530 -30433642 - MER70A LTR ERVL -61 411 3 2 1299 530 278 82 62 chr9 93642552 93642843 -30433329 - MER70-int LTR ERVL -12 5011 4715 2 1299 1550 226 32 37 chr9 93643011 93643387 -30432785 + ORR1D1 LTR MaLR 1 374 0 2 1299 1082 308 78 27 chr9 93643605 93644116 -30432056 - MER70-int LTR ERVL -748 4275 3739 2 1299 3456 223 65 62 chr9 93644166 93644246 -30431926 - RMER19B LTR ERVK -4 898 819 2 1299 315 0 0 0 chr9 93644246 93644281 -30431891 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1299 3456 223 65 62 chr9 93644281 93644296 -30431876 - RMER19B LTR ERVK -84 818 813 2 1299 6387 130 23 81 chr9 93644296 93645509 -30430663 + Lx3A LINE L1 5836 6978 -3 2 1299 3456 234 73 57 chr9 93645509 93646386 -30429786 - RMER19B LTR ERVK -90 812 1 2 1299 486 0 0 0 chr9 93647519 93647573 -30428599 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1299 23 68 0 0 chr9 93650725 93650769 -30425403 + AT_rich Low_complexity Low_complexity 1 44 0 2 1299 597 297 23 41 chr9 93650891 93651109 -30425063 + B3 SINE B2 3 216 0 2 1299 2765 241 73 49 chr9 93651171 93652353 -30423819 + L1_Rod LINE L1 4060 5269 -578 2 1299 32 43 0 0 chr9 93652354 93652400 -30423772 + AT_rich Low_complexity Low_complexity 1 46 0 2 1299 239 333 0 0 chr9 93652415 93652484 -30423688 + L1_Rod LINE L1 4005 4073 -1774 2 1299 4364 155 22 10 chr9 93652578 93653525 -30422647 + L1Md_F LINE L1 175 1148 -5576 2 1299 5016 128 7 20 chr9 93653522 93654598 -30421574 + L1Md_F2 LINE L1 438 1495 -4388 2 1299 25263 68 11 6 chr9 93654610 93658016 -30418156 + L1Md_F2 LINE L1 2165 5585 -298 2 1299 6610 116 12 9 chr9 93658017 93658998 -30417174 + L1Md_F2 LINE L1 5587 6570 -12 2 1299 1374 269 134 13 chr9 93659014 93659652 -30416520 + Lx9 LINE L1 5315 6052 -1592 2 1299 1371 328 60 37 chr9 93659795 93660064 -30416108 + Lx9 LINE L1 6620 6912 -732 2 1299 673 75 0 0 chr9 93660064 93660171 -30416001 - L1Md_F2 LINE L1 -2 6580 6474 2 1299 1371 328 60 37 chr9 93660171 93660748 -30415424 + Lx9 LINE L1 6913 7486 -158 2 1299 7031 73 0 0 chr9 93661117 93662006 -30414166 + L1_Mus1 LINE L1 5677 6565 -2 2 1299 260 388 90 44 chr9 93663244 93663565 -30412607 - MTEa LTR MaLR -43 336 1 2 1299 42 48 0 0 chr9 93664454 93664517 -30411655 + AT_rich Low_complexity Low_complexity 1 63 0 2 1299 708 134 7 50 chr9 93664925 93665066 -30411106 + B1_Mus1 SINE Alu 8 142 -6 2 1299 1482 0 11 6 chr9 93665066 93665245 -30410927 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1299 1424 0 17 6 chr9 93665267 93665444 -30410728 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 1299 1688 231 96 41 chr9 93667241 93667577 -30408595 + RMER2 LTR ERV1 30 375 -192 2 1299 522 75 0 0 chr9 93667577 93667657 -30408515 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1299 1688 231 96 41 chr9 93667657 93667830 -30408342 + RMER2 LTR ERV1 376 567 0 2 1299 423 299 28 0 chr9 93667830 93667937 -30408235 - B1_Mur1 SINE Alu -37 112 3 2 1299 518 162 9 0 chr9 93668677 93668709 -30407463 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 1299 528 16 0 0 chr9 93668709 93668770 -30407402 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1299 518 162 9 0 chr9 93668770 93668842 -30407330 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 1299 22 35 0 0 chr9 93669358 93669387 -30406785 + AT_rich Low_complexity Low_complexity 1 29 0 2 1299 21 0 0 0 chr9 93670173 93670194 -30405978 + AT_rich Low_complexity Low_complexity 1 21 0 2 1299 207 0 0 0 chr9 93670436 93670459 -30405713 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1299 1026 123 0 0 chr9 93670459 93670620 -30405552 + (TTC)n Simple_repeat Simple_repeat 2 163 0 2 1299 6391 112 54 1 chr9 93670843 93672293 -30403879 + L1_Mus3 LINE L1 5102 6612 -26 2 1299 193 0 29 59 chr9 93672293 93672327 -30403845 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1299 6391 102 80 1 chr9 93672327 93672338 -30403834 + L1_Mus3 LINE L1 6613 6623 -15 2 1299 4648 36 2 0 chr9 93673821 93674376 -30401796 - L1Md_T LINE L1 0 6582 6027 2 1299 710 318 56 19 chr9 93675564 93675830 -30400342 - Lx8 LINE L1 -47 7426 7151 2 1299 377 287 65 0 chr9 93675936 93676044 -30400128 + LTR40a LTR ERVL 362 476 -43 2 1299 237 65 0 0 chr9 93676569 93676600 -30399572 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 2 1299 1324 153 12 20 chr9 93677382 93677636 -30398536 + Lx4B LINE L1 6789 7040 -18 2 1299 366 23 0 0 chr9 93677636 93677679 -30398493 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 2 1299 613 290 17 23 chr9 93677689 93677862 -30398310 + B3 SINE B2 44 215 -1 2 1299 335 308 14 34 chr9 93677956 93678104 -30398068 - RMER30 DNA MER1_type -45 157 13 2 1299 4516 53 2 0 chr9 93678237 93678800 -30397372 + L1Md_F2 LINE L1 5022 5585 -298 2 1299 7695 60 4 4 chr9 93678801 93679781 -30396391 + L1Md_F2 LINE L1 5587 6566 -16 2 1299 10712 176 24 24 chr9 93681672 93684071 -30392101 - Lx5 LINE L1 -946 6104 3691 2 1299 271 96 19 19 chr9 93684123 93684176 -30391996 + (TTC)n Simple_repeat Simple_repeat 1 53 0 2 1299 209 241 17 0 chr9 93684231 93684289 -30391883 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1299 639 321 77 30 chr9 93684300 93684862 -30391310 - L1_Mur3 LINE L1 -7 5873 5286 2 1299 275 169 30 30 chr9 93684872 93684939 -30391233 + L1_Rod LINE L1 5146 5212 -635 2 1299 245 325 196 48 chr9 93684940 93684963 -30391209 + B4A SINE B4 3 22 -270 2 1299 1961 196 43 27 chr9 93684963 93685377 -30390795 - MTC LTR MaLR 0 421 1 2 1299 245 325 196 48 chr9 93685377 93685521 -30390651 + B4A SINE B4 23 195 -97 2 1299 405 0 0 0 chr9 93685618 93685663 -30390509 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1299 207 175 0 0 chr9 93685664 93685704 -30390468 + GA-rich Low_complexity Low_complexity 2 41 0 2 1299 6261 218 38 111 chr9 93685721 93686692 -30389480 + Lx7 LINE L1 4901 5790 -1906 2 1299 222 37 0 0 chr9 93686692 93686719 -30389453 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1299 6261 242 72 6 chr9 93686719 93688095 -30388077 + Lx7 LINE L1 5791 7264 -432 2 1299 314 278 47 8 chr9 93688234 93688361 -30387811 + Lx7 LINE L1 7565 7696 0 2 1299 180 296 56 14 chr9 93689816 93689888 -30386284 + L4 LINE RTE 1335 1409 -620 2 1299 204 67 0 0 chr9 93691071 93691101 -30385071 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1299 5953 51 29 4 chr9 93691728 93692492 -30383680 - L1Md_F2 LINE L1 -11 6571 5789 2 1299 1882 64 0 0 chr9 93692492 93692726 -30383446 + L1Md_F2 LINE L1 5556 5789 -94 2 1299 1070 97 0 20 chr9 93693134 93693281 -30382891 + B1_Mm SINE Alu 2 145 -2 2 1299 999 174 0 19 chr9 93693303 93693514 -30382658 + Lx3B LINE L1 6762 6968 -5 2 1299 253 321 93 12 chr9 93693646 93693807 -30382365 + L1_Mur3 LINE L1 3696 3869 -2011 2 1299 2035 115 33 6 chr9 93693927 93694259 -30381913 + L1_Mus3 LINE L1 6296 6636 -2 2 1299 2624 119 5 5 chr9 93694634 93695137 -30381035 + Lx LINE L1 5449 5948 -706 2 1299 434 261 119 85 chr9 93695222 93695398 -30380774 + B3 SINE B2 1 182 -34 2 1299 531 340 37 51 chr9 93695459 93695732 -30380440 - B4A SINE B4 -23 269 1 2 1299 264 351 72 13 chr9 93696150 93696303 -30379869 + RSINE1 SINE B4 3 164 -1 2 1299 23 0 0 0 chr9 93696340 93696363 -30379809 + AT_rich Low_complexity Low_complexity 1 23 0 2 1299 22 80 0 0 chr9 93697037 93697087 -30379085 + AT_rich Low_complexity Low_complexity 1 50 0 2 1299 863 274 46 4 chr9 93697382 93697620 -30378552 - MTD LTR MaLR -14 405 158 2 1299 2298 133 0 14 chr9 93697620 93697970 -30378202 - MTB_Mm LTR MaLR 0 346 2 2 1299 5067 170 35 40 chr9 93697971 93699321 -30376851 - MTB_Mm-int LTR MaLR 0 1963 20 2 1299 2995 93 0 12 chr9 93699335 93699747 -30376425 - MTB_Mm LTR MaLR 0 407 1 2 1299 2472 73 24 0 chr9 93699752 93700082 -30376090 + ORR1A1 LTR MaLR 1 338 -8 2 1299 346 233 0 0 chr9 93700082 93700142 -30376030 - MTD LTR MaLR -253 166 107 2 1299 2488 195 6 14 chr9 93700143 93700637 -30375535 - Lx4B LINE L1 -231 5646 5157 2 1299 5915 216 35 27 chr9 93700632 93701290 -30374882 + Lx4B LINE L1 5664 6327 -731 2 1299 2206 132 3 0 chr9 93701290 93701616 -30374556 - ORR1A2 LTR MaLR 0 327 1 2 1299 5915 216 35 27 chr9 93701616 93702312 -30373860 + Lx4B LINE L1 6328 7028 -30 2 1299 272 282 45 0 chr9 93702335 93702458 -30373714 - MTD LTR MaLR -286 133 1 2 1299 587 252 0 51 chr9 93702804 93702942 -30373230 + Lx9 LINE L1 6399 6529 -1115 2 1299 243 333 40 29 chr9 93703144 93703317 -30372855 - L1M2 LINE L1 -4524 2325 2151 2 1299 741 247 25 31 chr9 93703370 93703566 -30372606 - Lx4B LINE L1 -10 7048 6854 2 1299 285 135 0 0 chr9 93703635 93703687 -30372485 + (TTG)n Simple_repeat Simple_repeat 2 53 0 2 1299 4248 66 17 27 chr9 93703689 93704279 -30371893 - LTRIS_Mus LTR ERV1 -3 584 1 2 1299 660 36 0 0 chr9 93704319 93704402 -30371770 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 1299 556 306 0 0 chr9 93704404 93704528 -30371644 - RSINE1 SINE B4 -37 128 5 2 1299 1136 70 21 0 chr9 93704578 93704721 -30371451 - B1_Mus2 SINE Alu 0 147 2 2 1299 225 0 0 0 chr9 93705672 93705697 -30370475 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1299 578 228 6 0 chr9 93705839 93705997 -30370175 + CT-rich Low_complexity Low_complexity 3 161 0 2 1299 549 351 23 42 chr9 93706616 93706830 -30369342 + B3 SINE B2 2 211 -5 2 1299 11060 78 2 1 chr9 93706856 93708993 -30367179 - L1Md_F2 LINE L1 -16 6566 4427 2 1299 28207 63 109 6 chr9 93709017 93714511 -30361661 - L1Md_A LINE L1 -12 6570 467 2 1299 568 252 17 112 chr9 93714549 93714845 -30361327 - L1M3 LINE L1 -3224 2922 2655 2 1299 276 172 0 0 chr9 93714911 93714969 -30361203 + (CAT)n Simple_repeat Simple_repeat 2 59 0 2 1299 25 0 0 0 chr9 93715010 93715035 -30361137 + AT_rich Low_complexity Low_complexity 1 25 0 2 1299 654 305 15 0 chr9 93715978 93716175 -30359997 + B3 SINE B2 1 200 -16 3 1299 312 27 0 0 chr9 93716175 93716212 -30359960 + (TAAAA)n Simple_repeat Simple_repeat 5 41 0 3 1300 189 121 0 0 chr9 93716586 93716619 -30359553 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1300 9313 70 1 3 chr9 93716674 93717916 -30358256 - Lx3_Mus LINE L1 -1088 5921 4680 3 1300 1061 298 78 52 chr9 93718883 93718918 -30357254 - MTD LTR MaLR 0 419 385 3 1300 3839 72 38 16 chr9 93718918 93719467 -30356705 + L1_Mus3 LINE L1 6078 6638 0 3 1300 1061 298 78 52 chr9 93719467 93719831 -30356341 - MTD LTR MaLR -35 384 10 3 1300 548 273 50 55 chr9 93720175 93720357 -30355815 + MTEa LTR MaLR 3 183 -196 3 1300 750 132 0 0 chr9 93720449 93720608 -30355564 + (TC)n Simple_repeat Simple_repeat 2 160 0 3 1300 27 0 0 0 chr9 93721038 93721065 -30355107 + AT_rich Low_complexity Low_complexity 1 27 0 3 1300 805 301 108 61 chr9 93721257 93721685 -30354487 - Lx8 LINE L1 -166 7307 6860 3 1300 405 0 0 0 chr9 93721685 93721730 -30354442 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1300 694 319 34 34 chr9 93723995 93724378 -30351794 + L1_Rod LINE L1 5098 5480 -367 3 1300 365 251 43 71 chr9 93724373 93724557 -30351615 - L1_Mur3 LINE L1 -3583 2297 2119 3 1300 259 321 18 9 chr9 93724667 93724780 -30351392 + Lx7 LINE L1 7220 7333 -363 3 1300 22 56 0 0 chr9 93724929 93724965 -30351207 + AT_rich Low_complexity Low_complexity 1 36 0 3 1300 881 282 75 53 chr9 93724991 93725615 -30350557 - L1_Mur3 LINE L1 -3783 2097 1460 3 1300 218 216 0 19 chr9 93726043 93726095 -30350077 + CT-rich Low_complexity Low_complexity 4 54 0 3 1300 25 0 0 0 chr9 93726610 93726635 -30349537 + AT_rich Low_complexity Low_complexity 1 25 0 3 1300 441 0 0 0 chr9 93726635 93726684 -30349488 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1300 453 314 5 157 chr9 93727185 93727370 -30348802 + B4A SINE B4 132 288 -4 3 1300 241 270 151 0 chr9 93728526 93728652 -30347520 - L1MEc LINE L1 -4048 2352 2208 3 1300 294 29 0 0 chr9 93728676 93728711 -30347461 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1300 621 305 6 12 chr9 93728717 93728886 -30347286 - B3 SINE B2 -48 168 1 3 1300 256 308 43 103 chr9 93729045 93729161 -30347011 - MER20 DNA MER1_type -62 157 49 3 1300 496 274 37 25 chr9 93730029 93730190 -30345982 + RSINE1 SINE B4 3 165 0 3 1300 249 242 0 0 chr9 93730190 93730245 -30345927 + GA-rich Low_complexity Low_complexity 1 55 0 3 1300 303 113 0 0 chr9 93730245 93730298 -30345874 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 3 1300 227 114 23 0 chr9 93730487 93730531 -30345641 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1300 286 191 132 22 chr9 93730534 93730625 -30345547 + L1MA5 LINE L1 6173 6273 -27 3 1300 405 0 0 0 chr9 93730627 93730672 -30345500 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1300 293 0 27 0 chr9 93730713 93730750 -30345422 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 1300 25 65 0 0 chr9 93731278 93731324 -30344848 + AT_rich Low_complexity Low_complexity 1 46 0 3 1300 862 228 51 0 chr9 93731556 93731753 -30344419 - B3 SINE B2 -8 208 2 3 1300 7076 148 47 38 chr9 93731936 93733293 -30342879 - ORR1A3-int LTR MaLR -482 1481 112 3 1300 252 0 0 0 chr9 93733309 93733337 -30342835 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1300 456 19 0 0 chr9 93733409 93733462 -30342710 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 3 1300 833 110 55 0 chr9 93733464 93733591 -30342581 - B1_Mus1 SINE Alu -14 134 1 3 1300 971 207 53 0 chr9 93735016 93735204 -30340968 + B3 SINE B2 9 206 -10 3 1300 366 329 38 44 chr9 93737102 93737261 -30338911 + MLT1B LTR MaLR 215 372 -18 3 1300 903 149 0 0 chr9 93737268 93737422 -30338750 + (GGA)n Simple_repeat Simple_repeat 3 156 0 3 1300 455 307 33 7 chr9 93737989 93738140 -30338032 + MLT2B2 LTR ERVL 405 559 -3 3 1300 1163 290 42 42 chr9 93739239 93739718 -30336454 + Lx8 LINE L1 6995 7473 0 3 1300 4124 176 23 7 chr9 93739735 93740480 -30335692 + Lx4B LINE L1 6302 7058 0 3 1300 516 339 126 50 chr9 93740591 93741013 -30335159 - MLT1C LTR MaLR -10 457 4 3 1300 222 37 0 0 chr9 93741196 93741223 -30334949 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1300 696 306 79 22 chr9 93741425 93741830 -30334342 + L1MCc LINE L1 1071 1498 -4925 3 1300 243 268 28 0 chr9 93741948 93742019 -30334153 + GA-rich Low_complexity Low_complexity 4 76 0 3 1300 255 347 41 0 chr9 93742026 93742147 -30334025 + MLT1B LTR MaLR 21 146 -244 3 1300 254 357 54 54 chr9 93742545 93742767 -30333405 + RMER5 LTR ERV1 48 269 -265 3 1300 289 302 13 92 chr9 93742811 93742964 -30333208 + RMER5 LTR ERV1 358 498 -36 3 1300 732 129 0 0 chr9 93742976 93743100 -30333072 + (CA)n Simple_repeat Simple_repeat 1 124 0 3 1300 343 252 147 9 chr9 93743104 93743220 -30332952 + B1F SINE Alu 8 139 -10 3 1300 241 297 0 63 chr9 93743230 93743309 -30332863 + ID4_ SINE ID 8 81 -2 3 1300 227 290 129 14 chr9 93743670 93743740 -30332432 + ID4_ SINE ID 6 83 0 3 1300 404 302 68 15 chr9 93743880 93744183 -30331989 + L1MC4a LINE L1 7518 7875 -120 3 1300 388 371 23 8 chr9 93744637 93744770 -30331402 + RSINE1 SINE B4 8 142 -23 3 1300 432 0 0 0 chr9 93744776 93744824 -30331348 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1300 228 383 90 24 chr9 93745938 93746104 -30330068 + LTR78 LTR ERV1 767 943 -361 3 1300 327 314 28 28 chr9 93746142 93746250 -30329922 + PB1D10 SINE Alu 10 117 0 3 1300 741 306 26 52 chr9 93747232 93747463 -30328709 + B4A SINE B4 6 230 -62 3 1300 852 341 65 26 chr9 93747464 93748350 -30327822 + Lx8 LINE L1 5490 6402 -1071 3 1300 543 101 0 0 chr9 93748350 93748429 -30327743 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1300 992 292 127 8 chr9 93748443 93748803 -30327369 + Lx8 LINE L1 6886 7292 -181 3 1300 3244 77 0 0 chr9 93748803 93749233 -30326939 + L1Md_T LINE L1 6153 6582 0 3 1300 992 292 127 8 chr9 93749233 93749259 -30326913 + Lx8 LINE L1 7293 7318 -155 3 1300 894 298 103 23 chr9 93749815 93750340 -30325832 - Lx9 LINE L1 -6 7638 7072 3 1300 685 318 6 0 chr9 93750518 93750688 -30325484 - B3A SINE B2 -27 171 1 3 1300 1317 241 93 34 chr9 93751003 93751390 -30324782 + RMER15 LTR ERVL 166 575 0 3 1300 216 185 0 0 chr9 93752422 93752476 -30323696 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1300 995 275 70 45 chr9 93752847 93753298 -30322874 + Lx9 LINE L1 5477 5971 -1673 3 1300 617 275 72 7 chr9 93753541 93753795 -30322377 + Lx9 LINE L1 6177 6512 -1132 3 1300 24 32 0 0 chr9 93753799 93753830 -30322342 + AT_rich Low_complexity Low_complexity 1 31 0 3 1300 1455 88 0 10 chr9 93754208 93754414 -30321758 - L1_Mus1 LINE L1 0 6567 6364 3 1300 22 35 0 0 chr9 93754525 93754554 -30321618 + AT_rich Low_complexity Low_complexity 1 29 0 3 1300 235 341 0 0 chr9 93755128 93755187 -30320985 - ID4 SINE ID -20 63 5 3 1300 351 0 0 0 chr9 93755209 93755248 -30320924 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1300 289 244 0 71 chr9 93755311 93755395 -30320777 - PB1 SINE Alu 0 127 50 3 1300 3058 26 0 0 chr9 93755456 93755802 -30320370 + ORR1A0 LTR MaLR 1 346 0 3 1300 533 337 6 56 chr9 93756987 93757166 -30319006 + B4A SINE B4 4 173 -119 3 1300 1438 77 9 14 chr9 93757584 93757796 -30318376 - L1_Mus3 LINE L1 -1 6637 6427 3 1300 1166 187 132 11 chr9 93759047 93759334 -30316838 - Lx8 LINE L1 -260 7213 6892 3 1300 273 280 40 94 chr9 93759340 93759541 -30316631 + Lx8 LINE L1 7267 7456 -17 3 1300 261 57 0 0 chr9 93759790 93759825 -30316347 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1300 203 244 0 0 chr9 93760497 93760538 -30315634 + G-rich Low_complexity Low_complexity 2 42 0 3 1300 21 57 0 0 chr9 93761255 93761290 -30314882 + AT_rich Low_complexity Low_complexity 1 35 0 3 1300 284 253 33 0 chr9 93761323 93761414 -30314758 - L1M2 LINE L1 -2355 3788 3695 3 1300 3375 268 42 105 chr9 93761470 93761534 -30314638 - L1_Rod LINE L1 -2289 3558 3495 3 1300 287 65 22 0 chr9 93761534 93761580 -30314592 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1300 3375 268 42 105 chr9 93761580 93763490 -30312682 - L1_Rod LINE L1 -2353 3494 1709 3 1300 387 0 0 0 chr9 93763756 93763799 -30312373 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1300 496 193 66 7 chr9 93763821 93763957 -30312215 - L1_Rod LINE L1 -4186 1661 1518 3 1300 535 232 77 19 chr9 93764233 93764440 -30311732 - L1_Rod LINE L1 -6490 1118 900 3 1300 354 251 141 49 chr9 93765766 93765950 -30310222 - L1MB1 LINE L1 -147 6021 5821 3 1300 1069 93 0 0 chr9 93765991 93766130 -30310042 + B1_Mus1 SINE Alu 2 140 -8 3 1300 318 50 0 0 chr9 93766130 93766170 -30310002 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1300 248 337 141 56 chr9 93766403 93766708 -30309464 - MLT1A0 LTR MaLR -2 363 33 3 1300 252 303 47 47 chr9 93766695 93766844 -30309328 + YREP_Mm Unknown Unknown 163 311 -1501 3 1300 494 280 40 8 chr9 93766719 93766845 -30309327 - ID_B1 SINE B4 -9 215 86 3 1300 330 235 0 64 chr9 93766967 93767076 -30309096 + L1M3 LINE L1 5347 5448 -720 3 1300 295 299 61 20 chr9 93767192 93767291 -30308881 + PB1D10 SINE Alu 9 111 -6 3 1300 322 355 104 49 chr9 93767438 93767764 -30308408 - L1MD3 LINE L1 -932 7063 6720 3 1300 20217 117 60 7 chr9 93768012 93772563 -30303609 + L1Md_F2 LINE L1 354 5589 -297 3 1300 7084 89 10 23 chr9 93772563 93773561 -30302611 + L1Md_F2 LINE L1 5587 6571 -11 3 1300 217 0 61 0 chr9 93774047 93774080 -30302092 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1300 858 29 0 0 chr9 93775764 93775869 -30300303 + (TG)n Simple_repeat Simple_repeat 2 106 0 3 1300 216 275 13 80 chr9 93775884 93775959 -30300213 - B1_Mur2 SINE Alu -12 137 68 3 1300 828 93 0 35 chr9 93776052 93776196 -30299976 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 3 1300 442 341 37 75 chr9 93776718 93777193 -30298979 + L1M4 LINE L1 316 773 -5769 3 1300 456 19 0 0 chr9 93777193 93777246 -30298926 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1300 2690 99 15 5 chr9 93777573 93777968 -30298204 - L1_Mus3 LINE L1 -2 6636 6238 4 1300 804 43 0 9 chr9 93777984 93778100 -30298072 - L1Md_F3 LINE L1 -14 6570 6456 4 1300 279 0 0 0 chr9 93779188 93779219 -30296953 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1300 269 89 22 0 chr9 93780154 93780199 -30295973 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1300 267 31 0 0 chr9 93780199 93780230 -30295942 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1300 228 226 64 106 chr9 93780975 93781069 -30295103 + MTEa LTR MaLR 287 376 -3 4 1300 743 267 24 5 chr9 93782164 93782375 -30293797 - B3 SINE B2 0 216 2 4 1300 322 377 31 0 chr9 93782470 93782600 -30293572 - B1F2 SINE Alu -15 134 1 4 1300 245 337 12 35 chr9 93782771 93782857 -30293315 + PB1D10 SINE Alu 20 103 -14 4 1300 1033 139 40 0 chr9 93783629 93783802 -30292370 + B2_Mm2 SINE B2 1 180 -15 4 1300 455 36 0 0 chr9 93783831 93783886 -30292286 + B2_Mm2 SINE B2 47 101 -94 4 1300 306 0 0 0 chr9 93783910 93783944 -30292228 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 4 1300 21 0 0 0 chr9 93784063 93784084 -30292088 + AT_rich Low_complexity Low_complexity 1 21 0 4 1300 269 343 10 0 chr9 93784872 93784971 -30291201 + PB1D10 SINE Alu 11 110 -7 4 1300 573 288 72 89 chr9 93784982 93785466 -30290706 + L1MA6 LINE L1 5769 6244 -56 4 1300 186 43 0 0 chr9 93785496 93785519 -30290653 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 1300 405 0 0 0 chr9 93785651 93785696 -30290476 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1300 238 65 0 0 chr9 93785822 93785853 -30290319 - L1Md_F3 LINE L1 -329 6255 6225 4 1300 2308 69 30 0 chr9 93785853 93786158 -30290014 + L1_Mus1 LINE L1 6254 6567 0 4 1300 791 166 21 0 chr9 93786384 93786529 -30289643 - Lx4B LINE L1 -1101 5957 5810 4 1300 882 253 129 53 chr9 93786529 93786984 -30289188 + RLTR20C LTR ERVK 1 539 -12 4 1300 599 134 99 30 chr9 93786988 93787119 -30289053 - Lx5 LINE L1 -1245 5805 5666 4 1300 4296 199 34 11 chr9 93787117 93788004 -30288168 + Lx5 LINE L1 5973 6959 -91 4 1300 291 299 131 63 chr9 93788014 93788259 -30287913 + MLT1A0 LTR MaLR 73 333 -41 4 1300 680 216 16 0 chr9 93788490 93788615 -30287557 - B3A SINE B2 -66 132 6 4 1300 383 341 5 52 chr9 93788881 93789094 -30287078 + Lx9 LINE L1 7270 7472 -172 4 1300 237 65 0 0 chr9 93789094 93789125 -30287047 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1300 1782 46 0 0 chr9 93789419 93789636 -30286536 - L1_Mus1 LINE L1 0 6567 6351 4 1300 313 370 6 80 chr9 93790057 93790233 -30285939 - RSINE1 SINE B4 0 165 3 4 1300 983 220 52 79 chr9 93790647 93791285 -30284887 + RMER6A LTR ERVK 1 721 -35 4 1300 2902 287 95 40 chr9 93792187 93793572 -30282600 - Lx9 LINE L1 -23 7621 6161 4 1300 249 33 0 0 chr9 93796294 93796324 -30279848 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1300 381 109 0 0 chr9 93796327 93796382 -30279790 - L1Md_F2 LINE L1 -334 6248 6194 4 1300 2695 62 3 0 chr9 93796382 93796735 -30279437 + L1Md_F2 LINE L1 6229 6582 0 4 1300 960 173 87 0 chr9 93797353 93797451 -30278721 + RLTR20D LTR ERVK 366 464 -104 4 1300 1287 84 0 0 chr9 93797451 93797629 -30278543 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1300 960 173 87 0 chr9 93797629 93797715 -30278457 + RLTR20D LTR ERVK 465 564 -4 4 1300 772 255 128 43 chr9 93797718 93798063 -30278109 - L1_Mur3 LINE L1 -1850 4030 3657 4 1300 449 390 101 4 chr9 93798098 93798335 -30277837 + B4A SINE B4 26 285 -7 4 1300 226 250 0 0 chr9 93800092 93800148 -30276024 + A-rich Low_complexity Low_complexity 1 56 0 4 1300 384 240 25 13 chr9 93800313 93800463 -30275709 - Lx9 LINE L1 -1739 5905 5722 4 1300 1563 251 96 13 chr9 93800462 93800931 -30275241 + Lx9 LINE L1 6502 7009 -635 4 1300 934 201 144 39 chr9 93800948 93801254 -30274918 - RLTR15 LTR ERVK -19 340 3 4 1300 727 325 74 28 chr9 93801254 93801644 -30274528 + Lx9 LINE L1 7018 7425 -219 4 1300 23 33 0 0 chr9 93801865 93801895 -30274277 + AT_rich Low_complexity Low_complexity 1 30 0 4 1300 1167 231 14 29 chr9 93802088 93802151 -30274021 - Lx9 LINE L1 -252 7392 7336 4 1300 3372 27 74 0 chr9 93802151 93802557 -30273615 - RLTR10C LTR ERVK 0 436 1 4 1300 1167 231 14 29 chr9 93802557 93802770 -30273402 - Lx9 LINE L1 -309 7335 7120 4 1300 290 206 0 0 chr9 93802775 93802843 -30273329 + Lx9 LINE L1 7577 7644 0 4 1300 1002 212 25 20 chr9 93802902 93803104 -30273068 + B3 SINE B2 10 212 -4 4 1300 231 36 0 0 chr9 93804017 93804045 -30272127 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1300 963 94 7 21 chr9 93804058 93804199 -30271973 - B1_Mus2 SINE Alu -6 141 3 4 1300 210 91 0 0 chr9 93805838 93805871 -30270301 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1300 39023 64 2 23 chr9 93805880 93812941 -30263231 - L1Md_T LINE L1 0 6582 99 4 1300 559 285 22 0 chr9 93813369 93813506 -30262666 - B1_Mur2 SINE Alu -4 145 6 4 1300 22 0 0 0 chr9 93814414 93814436 -30261736 + AT_rich Low_complexity Low_complexity 1 22 0 4 1300 639 147 0 4 chr9 93815355 93815582 -30260590 + (CA)n Simple_repeat Simple_repeat 1 226 0 4 1300 368 97 97 0 chr9 93815582 93815644 -30260528 + HAL1-3A_ME LINE L1 1975 2042 -816 4 1300 373 78 54 22 chr9 93816123 93816215 -30259957 + T-rich Low_complexity Low_complexity 4 98 0 4 1300 654 67 32 40 chr9 93816232 93816356 -30259816 - L1_Mus4 LINE L1 -15 6621 6499 4 1300 5704 187 20 29 chr9 93817890 93819057 -30257115 + Lx2B LINE L1 5832 6987 -13 4 1300 346 296 92 33 chr9 93819064 93819531 -30256641 + L1M2 LINE L1 2759 3258 -3587 4 1300 21 36 0 0 chr9 93819822 93819850 -30256322 + AT_rich Low_complexity Low_complexity 1 28 0 4 1300 720 325 134 12 chr9 93819928 93820264 -30255908 + MTE2b LTR MaLR 3 379 0 4 1300 357 276 155 27 chr9 93821833 93821885 -30254287 - L1M2 LINE L1 -2900 3243 3187 4 1300 2381 148 38 0 chr9 93821885 93822278 -30253894 + Lx2 LINE L1 6590 6997 0 4 1300 357 276 155 27 chr9 93822278 93822560 -30253612 - L1M2 LINE L1 -2957 3186 2867 4 1300 223 32 0 0 chr9 93822953 93822984 -30253188 - B3A SINE B2 -167 31 1 4 1300 1096 167 168 20 chr9 93823303 93823553 -30252619 + Lx2B LINE L1 6708 6994 -6 4 1300 241 307 109 28 chr9 93824514 93824672 -30251500 + MIR SINE MIR 19 183 -79 4 1300 1301 237 66 44 chr9 93825941 93826303 -30249869 + ORR1D2 LTR MaLR 1 370 0 4 1300 312 377 36 14 chr9 93826374 93826597 -30249575 + MIR SINE MIR 28 255 -7 4 1300 3256 168 60 28 chr9 93826630 93826979 -30249193 + RMER6C LTR ERVK 13 366 -324 4 1300 390 42 0 0 chr9 93826979 93827027 -30249145 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1300 3256 168 60 28 chr9 93827027 93827332 -30248840 + RMER6C LTR ERVK 367 688 -2 4 1300 442 315 34 27 chr9 93827864 93828011 -30248161 + RSINE1 SINE B4 12 159 -6 4 1300 249 33 0 0 chr9 93828023 93828053 -30248119 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1300 285 200 35 59 chr9 93829069 93829154 -30247018 + PB1D10 SINE Alu 35 117 0 4 1300 216 133 50 0 chr9 93829234 93829294 -30246878 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 4 1300 261 189 55 36 chr9 93829375 93829430 -30246742 - RSINE1 SINE B4 -67 98 43 4 1300 5329 51 6 0 chr9 93829532 93830198 -30245974 - L1Md_F2 LINE L1 -5 6577 5908 4 1300 366 72 31 3 chr9 93830198 93830271 -30245901 + L1_Mm LINE L1 4188 4264 -1616 4 1300 2702 78 3 0 chr9 93830265 93830624 -30245548 + L1_Mm LINE L1 4886 5245 -638 4 1300 250 262 109 52 chr9 93831136 93831329 -30244843 + L1MD LINE L1 4898 5101 -1045 4 1300 387 0 0 0 chr9 93831374 93831417 -30244755 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1300 265 346 59 73 chr9 93831482 93831798 -30244374 + MLT1B LTR MaLR 42 387 -3 4 1300 659 312 52 36 chr9 93831885 93832247 -30243925 + L1MD LINE L1 5344 5711 -648 4 1300 189 74 0 0 chr9 93832393 93832420 -30243752 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1300 821 126 13 0 chr9 93833346 93833497 -30242675 + (TTCC)n Simple_repeat Simple_repeat 4 156 0 4 1300 411 38 0 0 chr9 93833596 93833649 -30242523 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1300 1701 217 31 59 chr9 93834023 93834478 -30241694 + RMER1C Other Other 892 1333 -9 4 1300 223 300 88 20 chr9 93836804 93836906 -30239266 + L2 LINE L2 2573 2681 -738 4 1300 285 391 38 25 chr9 93837119 93837358 -30238814 + L2 LINE L2 2831 3072 -347 4 1300 591 94 0 0 chr9 93837685 93837781 -30238391 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 1300 481 90 51 0 chr9 93838179 93838257 -30237915 + L1_Mus2 LINE L1 6484 6565 -1 4 1300 441 282 106 11 chr9 93838371 93838550 -30237622 - RMER15 LTR ERVL -13 562 367 4 1300 22 0 0 0 chr9 93841065 93841087 -30235085 + AT_rich Low_complexity Low_complexity 1 22 0 4 1300 196 91 45 0 chr9 93841142 93841186 -30234986 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 4 1300 712 138 26 0 chr9 93841187 93841303 -30234869 - PB1D9 SINE Alu 0 120 2 4 1300 544 203 25 112 chr9 93841311 93841472 -30234700 - B3A SINE B2 -4 194 48 4 1300 786 287 107 11 chr9 93841496 93841767 -30234405 + MTD LTR MaLR 82 378 -41 4 1300 471 317 38 45 chr9 93841883 93842233 -30233939 - L1MA5 LINE L1 -373 5924 5559 4 1300 3153 189 46 64 chr9 93842375 93843089 -30233083 - RMER1B Other Other -13 1053 353 4 1300 977 298 86 36 chr9 93843069 93843774 -30232398 - RMER1B Other Other -477 865 72 4 1300 1274 235 76 46 chr9 93844093 93844463 -30231709 - MTC-int LTR MaLR -852 406 26 4 1300 842 245 41 20 chr9 93844552 93844798 -30231374 - MTD LTR MaLR -168 251 1 4 1300 1138 302 93 13 chr9 93844809 93845708 -30230464 - L1MA5 LINE L1 -447 5433 4479 4 1300 306 0 0 0 chr9 93845708 93845742 -30230430 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 4 1300 5210 123 72 37 chr9 93845745 93846670 -30229502 + RMER17B LTR ERVK 1 958 0 4 162 1670 304 58 29 chr9 93846670 93847723 -30228449 - L1MA5 LINE L1 -1662 4478 3260 4 1301 1040 299 110 31 chr9 93847991 93848437 -30227735 - Lx8 LINE L1 -184 7289 6809 4 1301 21 95 0 0 chr9 93848524 93848587 -30227585 + AT_rich Low_complexity Low_complexity 1 63 0 5 1301 3022 62 10 0 chr9 93848595 93848981 -30227191 - L1Md_F2 LINE L1 -12 6570 6181 5 1301 28 79 0 0 chr9 93849836 93849899 -30226273 + AT_rich Low_complexity Low_complexity 1 63 0 5 1301 602 346 44 0 chr9 93849932 93850114 -30226058 - B3A SINE B2 -8 190 1 5 1301 234 299 41 105 chr9 93850349 93850521 -30225651 + LTR41 LTR ERVL 152 312 -456 5 1301 347 300 64 27 chr9 93851321 93851553 -30224619 - L1M5 LINE L1 -837 5309 5073 5 1301 242 247 39 13 chr9 93851606 93851684 -30224488 - L1M5 LINE L1 -1156 4990 4911 5 1301 554 0 15 0 chr9 93853295 93853361 -30222811 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 5 1301 31384 33 0 0 chr9 93853587 93858067 -30218105 - L1Md_T LINE L1 0 6582 2105 5 1301 320 0 0 24 chr9 93858336 93858377 -30217795 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1301 281 346 102 0 chr9 93858493 93858620 -30217552 - RSINE1 SINE B4 0 165 26 5 1301 392 324 123 27 chr9 93858623 93858915 -30217257 + Lx8 LINE L1 7148 7467 -6 5 1301 1330 115 0 22 chr9 93859043 93859265 -30216907 - Lx LINE L1 -1 6653 6437 5 1301 21 0 0 0 chr9 93859696 93859717 -30216455 + AT_rich Low_complexity Low_complexity 1 21 0 5 1301 296 70 0 17 chr9 93861218 93861276 -30214896 + Lx LINE L1 6598 6654 0 5 1301 468 0 0 0 chr9 93861281 93861333 -30214839 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 5 1301 465 19 0 0 chr9 93862472 93862526 -30213646 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1301 21 0 0 0 chr9 93863688 93863709 -30212463 + AT_rich Low_complexity Low_complexity 1 21 0 5 1301 201 178 0 0 chr9 93865191 93865236 -30210936 + (CATG)n Simple_repeat Simple_repeat 1 45 0 5 1301 252 0 0 0 chr9 93865247 93865275 -30210897 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1301 552 268 14 21 chr9 93865385 93865530 -30210642 + ID_B1 SINE B4 81 224 0 5 1301 450 0 0 0 chr9 93865530 93865580 -30210592 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 5 1301 2370 98 8 85 chr9 93865677 93866066 -30210106 - RLTR10D LTR ERVK 0 359 1 5 1301 26 0 0 0 chr9 93866406 93866432 -30209740 + AT_rich Low_complexity Low_complexity 1 26 0 5 1301 596 130 24 89 chr9 93866519 93866688 -30209484 + Lx3A LINE L1 6823 6980 -1 5 1301 549 68 0 0 chr9 93866956 93867030 -30209142 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1301 709 185 8 15 chr9 93867302 93867434 -30208738 + RMER15 LTR ERVL 1 131 -444 5 1301 1356 174 57 60 chr9 93867438 93867756 -30208416 + Lx3C LINE L1 6659 6975 -1 5 1301 228 67 0 0 chr9 93867757 93867787 -30208385 + (GGA)n Simple_repeat Simple_repeat 2 31 0 5 1301 1006 140 6 6 chr9 93867787 93867967 -30208205 + GA-rich Low_complexity Low_complexity 1 180 0 5 1301 1395 51 0 0 chr9 93867967 93868143 -30208029 + (GAA)n Simple_repeat Simple_repeat 2 177 0 5 1301 240 342 117 0 chr9 93868143 93868263 -30207909 + RMER15 LTR ERVL 141 274 -301 5 1301 607 263 70 32 chr9 93868263 93868448 -30207724 + RMER15 LTR ERVL 384 575 0 5 1301 423 0 0 0 chr9 93869202 93869249 -30206923 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1301 828 342 84 21 chr9 93869902 93870368 -30205804 + MLT1D LTR MaLR 10 504 -1 5 1301 306 0 0 0 chr9 93870693 93870727 -30205445 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1301 516 16 0 0 chr9 93870746 93870807 -30205365 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1301 240 386 0 0 chr9 93871062 93871132 -30205040 + B4 SINE B4 1 70 -222 5 1301 619 233 15 15 chr9 93871289 93871424 -30204748 + B1_Mur1 SINE Alu 13 147 -2 5 1301 468 0 0 0 chr9 93871559 93871611 -30204561 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1301 22 35 0 0 chr9 93871749 93871778 -30204394 + AT_rich Low_complexity Low_complexity 1 29 0 5 1301 21 57 0 0 chr9 93872039 93872074 -30204098 + AT_rich Low_complexity Low_complexity 1 35 0 5 1301 192 40 0 0 chr9 93872544 93872569 -30203603 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 1301 579 55 33 11 chr9 93872576 93872668 -30203504 + (TTTTC)n Simple_repeat Simple_repeat 3 96 0 5 1301 535 53 13 0 chr9 93872681 93872756 -30203416 - B1_Mus2 SINE Alu -1 146 71 5 1301 432 0 0 0 chr9 93872999 93873047 -30203125 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1301 2026 170 125 59 chr9 93873202 93873745 -30202427 + RMER6C LTR ERVK 1 579 -111 5 1301 3373 240 83 82 chr9 93873919 93875009 -30201163 - Lx9 LINE L1 -396 7248 6158 5 1301 588 162 0 0 chr9 93875010 93875115 -30201057 + CT-rich Low_complexity Low_complexity 3 107 0 5 1301 447 260 0 0 chr9 93877175 93877352 -30198820 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 1301 2982 26 0 3 chr9 93878606 93878953 -30197219 + ORR1A0 LTR MaLR 1 346 0 5 1301 431 277 16 16 chr9 93879870 93879991 -30196181 + RSINE1 SINE B4 3 123 -42 5 1301 358 299 0 0 chr9 93881368 93881455 -30194717 - MTEb LTR MaLR -278 101 15 5 1301 615 327 89 29 chr9 93882352 93882667 -30193505 - MER2 DNA MER2_type -10 335 2 5 1301 1494 224 67 32 chr9 93882829 93883234 -30192938 - MTD LTR MaLR 0 419 1 5 1301 218 372 21 31 chr9 93883413 93883510 -30192662 - L2 LINE L2 -557 2862 2767 5 1301 183 286 170 9 chr9 93884492 93884598 -30191574 - L2 LINE L2 -1230 2189 2067 5 1301 771 11 0 0 chr9 93886316 93886404 -30189768 + (TTTCC)n Simple_repeat Simple_repeat 1 88 0 5 1301 1557 17 0 0 chr9 93886404 93886584 -30189588 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 5 1301 875 80 0 8 chr9 93886616 93886742 -30189430 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 5 1301 29 0 0 0 chr9 93888196 93888225 -30187947 + AT_rich Low_complexity Low_complexity 1 29 0 5 1301 3335 194 50 20 chr9 93888258 93888917 -30187255 - Lx5 LINE L1 -11 7039 6361 5 1301 207 0 0 0 chr9 93889223 93889246 -30186926 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1301 280 274 55 0 chr9 93889249 93889322 -30186850 - ID4 SINE ID -3 80 4 5 1301 1966 171 50 28 chr9 93890075 93890473 -30185699 + MTB_Mm LTR MaLR 1 407 0 5 1301 931 312 34 89 chr9 93891136 93891516 -30184656 - ORR1E LTR MaLR 0 359 1 5 1301 287 383 7 7 chr9 93891820 93891962 -30184210 + MIR SINE MIR 75 216 -46 5 1301 457 336 15 15 chr9 93891977 93892113 -30184059 + B3 SINE B2 5 140 -76 5 1301 202 245 20 0 chr9 93892836 93892885 -30183287 + L2 LINE L2 323 372 -3047 5 1301 554 54 0 0 chr9 93893119 93893237 -30182935 + L1_Mus1 LINE L1 6490 6567 0 5 1301 302 275 22 11 chr9 93894184 93894276 -30181896 - HAL1-3A_ME LINE L1 -828 2030 1938 5 1301 21 0 0 0 chr9 93894344 93894365 -30181807 + AT_rich Low_complexity Low_complexity 1 21 0 5 1301 353 109 16 0 chr9 93894786 93894850 -30181322 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1301 900 244 27 5 chr9 93894850 93895035 -30181137 - B3 SINE B2 -22 194 6 5 1301 1925 181 40 20 chr9 93895658 93896057 -30180115 + MTB_Mm LTR MaLR 1 407 0 5 1301 30 89 0 0 chr9 93896846 93896925 -30179247 + AT_rich Low_complexity Low_complexity 1 79 0 5 1301 328 352 42 18 chr9 93896961 93897126 -30179046 + MLT1J LTR MaLR 3 171 -341 5 1301 33688 80 24 6 chr9 93897840 93903454 -30172718 + L1Md_F2 LINE L1 575 6297 -285 5 1301 431 304 57 16 chr9 93903539 93903733 -30172439 + L2a LINE L2 1408 1609 -1810 5 1301 333 125 0 0 chr9 93904095 93904151 -30172021 + (T)n Simple_repeat Simple_repeat 1 56 0 5 1301 180 301 255 63 chr9 93904865 93905211 -30170961 + L2a LINE L2 2138 2542 -877 5 1301 1353 45 0 17 chr9 93905211 93905391 -30170781 + L1Md_F3 LINE L1 6394 6570 -14 5 1301 180 301 255 63 chr9 93905391 93905743 -30170429 + L2a LINE L2 2543 2970 -449 5 1301 249 359 40 91 chr9 93905813 93906012 -30170160 + L2a LINE L2 3225 3413 -13 5 1301 638 256 112 12 chr9 93907280 93907450 -30168722 + MTE2b LTR MaLR 193 379 0 5 1301 680 261 19 6 chr9 93907475 93907633 -30168539 - B3 SINE B2 0 216 57 5 1301 387 0 0 0 chr9 93907658 93907701 -30168471 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1301 2455 149 5 58 chr9 93907702 93908136 -30168036 - Lx3C LINE L1 -64 6912 6502 5 1301 404 191 0 56 chr9 93908130 93908219 -30167953 - L1_Mur1 LINE L1 -6150 832 749 5 1301 567 43 0 0 chr9 93910129 93910199 -30165973 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 5 1301 921 144 11 6 chr9 93911180 93911355 -30164817 + CT-rich Low_complexity Low_complexity 2 177 0 5 1301 219 114 0 0 chr9 93911827 93911862 -30164310 + (CCA)n Simple_repeat Simple_repeat 1 35 0 5 1301 1223 179 9 5 chr9 93912357 93912576 -30163596 + RLTR24 LTR ERV1 1 220 -309 5 1301 415 115 0 0 chr9 93912669 93912730 -30163442 + RLTR24 LTR ERV1 469 529 0 5 1301 981 116 7 0 chr9 93914087 93914234 -30161938 + B1_Mus1 SINE Alu 1 148 0 5 1301 926 287 29 67 chr9 93914647 93915006 -30161166 + ORR1E LTR MaLR 1 380 -20 5 1301 3655 294 129 42 chr9 93915043 93916390 -30159782 + ORR1E-int LTR MaLR 60 1525 -55 5 1301 1038 278 67 32 chr9 93916390 93916732 -30159440 + ORR1E LTR MaLR 1 354 -5 5 1301 580 258 8 0 chr9 93916748 93916880 -30159292 - B1_Mur1 SINE Alu -5 144 12 5 1301 21 36 0 0 chr9 93916895 93916923 -30159249 + AT_rich Low_complexity Low_complexity 1 28 0 5 1301 203 171 0 0 chr9 93917565 93917606 -30158566 + A-rich Low_complexity Low_complexity 4 44 0 5 1301 212 295 51 102 chr9 93917896 93918092 -30158080 - B2_Mm2 SINE B2 -1 194 9 5 1301 466 325 57 38 chr9 93917944 93918101 -30158071 - RSINE1 SINE B4 -3 162 3 5 1301 379 270 87 0 chr9 93918616 93918731 -30157441 - MIRb SINE MIR -71 197 73 5 1301 246 193 0 34 chr9 93918964 93919023 -30157149 + GA-rich Low_complexity Low_complexity 3 59 0 5 1301 266 212 12 86 chr9 93920160 93920261 -30155911 - MLT1J1 LTR MaLR -6 442 348 5 1301 203 32 65 0 chr9 93920289 93920320 -30155852 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 5 1301 236 271 105 48 chr9 93920582 93920706 -30155466 + MLT2B2 LTR ERVL 1 131 -384 5 1301 346 284 11 11 chr9 93920899 93920988 -30155184 + MTEa LTR MaLR 279 367 -12 5 1301 1053 260 164 9 chr9 93920997 93921459 -30154713 + RMER5 LTR ERV1 1 534 0 6 1301 723 64 27 0 chr9 93921535 93921645 -30154527 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 6 1301 21 57 0 0 chr9 93921651 93921686 -30154486 + AT_rich Low_complexity Low_complexity 1 35 0 6 1301 417 99 12 24 chr9 93921687 93921770 -30154402 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 6 1301 3762 121 41 29 chr9 93922593 93922877 -30153295 - Lx LINE L1 -3 6651 6366 6 1301 3457 36 63 28 chr9 93922877 93923336 -30152836 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1301 3762 121 41 29 chr9 93923336 93923679 -30152493 - Lx LINE L1 -289 6365 6016 6 1301 266 230 12 75 chr9 93923988 93924068 -30152104 + ORR1E LTR MaLR 285 359 0 6 1301 251 174 22 0 chr9 93924093 93924130 -30152042 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 6 1301 838 319 19 35 chr9 93924130 93924390 -30151782 + ORR1E-int LTR MaLR 1 256 -1114 6 1301 991 274 14 95 chr9 93924394 93924484 -30151688 + ORR1E-int LTR MaLR 812 889 -481 6 1301 1537 187 9 47 chr9 93924484 93924826 -30151346 + ORR1A4 LTR MaLR 1 329 0 6 1301 991 274 14 95 chr9 93924826 93925094 -30151078 + ORR1E-int LTR MaLR 890 1141 -229 6 1301 180 185 185 0 chr9 93925360 93925414 -30150758 + L4 LINE RTE 768 831 -1198 6 1301 22 35 0 0 chr9 93925414 93925443 -30150729 + AT_rich Low_complexity Low_complexity 1 29 0 6 1301 401 357 38 6 chr9 93925700 93925858 -30150314 + LTR33A_ LTR ERVL 74 236 -295 6 1301 366 323 25 25 chr9 93925846 93926008 -30150164 - RMER15 LTR ERVL -16 559 398 6 1301 1731 276 134 21 chr9 93926277 93926852 -30149320 - MTEa-int LTR MaLR -750 830 190 6 1301 2334 179 33 13 chr9 93926852 93927594 -30148578 + RMER13A LTR ERVK 1 855 -5 6 1301 404 333 37 21 chr9 93927611 93927798 -30148374 - MTEa-int LTR MaLR -1389 191 2 6 1301 935 286 118 21 chr9 93927803 93928142 -30148030 - MTEa LTR MaLR -3 376 5 6 1301 2034 343 97 41 chr9 93928204 93929340 -30146832 - MTE-int LTR MaLR -62 1518 320 6 1301 296 64 0 21 chr9 93929901 93929949 -30146223 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 6 1301 250 179 0 0 chr9 93932724 93932780 -30143392 + L1MC LINE L1 3729 3784 -2362 6 1301 421 244 16 152 chr9 93932837 93933200 -30142972 - Lx9 LINE L1 0 7644 7331 6 1301 1207 88 53 0 chr9 93933272 93933442 -30142730 + B2_Mm2 SINE B2 3 181 -14 6 1301 8213 133 63 9 chr9 93933569 93934959 -30141213 - Lx2B LINE L1 -5 6995 5526 6 1301 1047 144 37 11 chr9 93934962 93935151 -30141021 - Lx2B LINE L1 -616 5261 5068 6 1301 1833 176 5 22 chr9 93935137 93935504 -30140668 - Lx2B LINE L1 -2197 3680 3320 6 1301 5403 149 32 12 chr9 93935500 93936428 -30139744 - Lx LINE L1 -2 6652 5706 6 1301 4861 176 120 23 chr9 93936430 93938688 -30137484 - Lx2B LINE L1 -2540 3337 428 6 1301 328 290 29 0 chr9 93938928 93939031 -30137141 + L1MC LINE L1 3774 3879 -2267 6 1301 208 28 54 27 chr9 93939031 93939068 -30137104 + (CTAAA)n Simple_repeat Simple_repeat 3 40 0 6 1301 328 290 29 0 chr9 93939068 93939102 -30137070 + L1MC LINE L1 3880 3914 -2232 6 1301 288 77 0 0 chr9 93939157 93939196 -30136976 + (TATG)n Simple_repeat Simple_repeat 4 42 0 6 1301 417 283 81 27 chr9 93939234 93939383 -30136789 - B4A SINE B4 -9 283 127 6 1301 21 57 0 0 chr9 93939887 93939922 -30136250 + AT_rich Low_complexity Low_complexity 1 35 0 6 1301 800 308 5 0 chr9 93939995 93940203 -30135969 - B3 SINE B2 0 216 8 6 1301 362 380 72 48 chr9 93940412 93940829 -30135343 + L3 LINE CR1 4062 4488 -1 6 1301 253 229 32 117 chr9 93940989 93941083 -30135089 - L2c LINE L2 0 3387 3302 6 1301 383 264 112 9 chr9 93941452 93941559 -30134613 + MER2 DNA MER2_type 26 143 -202 6 1301 240 130 0 0 chr9 93943607 93943653 -30132519 + (GGAGAA)n Simple_repeat Simple_repeat 3 48 0 6 1301 246 32 0 0 chr9 93943698 93943729 -30132443 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1301 318 342 45 9 chr9 93944178 93944290 -30131882 + PB1D10 SINE Alu 1 116 -1 6 1301 486 0 0 0 chr9 93945328 93945382 -30130790 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1301 360 0 0 0 chr9 93945383 93945423 -30130749 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1301 248 286 89 44 chr9 93945697 93946012 -30130160 + HAL1 LINE L1 856 1184 -1323 6 1301 1821 303 110 60 chr9 93946075 93947118 -30129054 + Lx8 LINE L1 5972 7068 -405 6 1301 23 0 0 0 chr9 93949027 93949050 -30127122 + AT_rich Low_complexity Low_complexity 1 23 0 6 1301 711 244 21 48 chr9 93949307 93949565 -30126607 + MTE2a LTR MaLR 66 406 -13 6 1301 1140 83 0 0 chr9 93951034 93951179 -30124993 + B1_Mus2 SINE Alu 1 145 -2 6 1301 315 243 40 0 chr9 93951329 93951403 -30124769 - MTE2a LTR MaLR -13 366 290 6 1301 533 15 15 0 chr9 93951489 93951555 -30124617 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1301 648 348 46 33 chr9 93951611 93951852 -30124320 - B4A SINE B4 -46 246 3 6 1301 254 323 100 43 chr9 93951920 93952150 -30124022 - Kanga11a DNA Tc2 -537 433 191 6 1301 296 356 17 0 chr9 93953674 93953789 -30122383 + PB1D10 SINE Alu 1 117 0 6 1301 593 101 10 0 chr9 93953831 93953930 -30122242 + (GGGA)n Simple_repeat Simple_repeat 3 102 0 6 1301 228 350 79 21 chr9 93954011 93954151 -30122021 + B1F SINE Alu 2 149 0 6 1301 195 42 0 0 chr9 93954152 93954176 -30121996 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1301 369 0 0 0 chr9 93954253 93954294 -30121878 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1301 205 250 15 15 chr9 93954330 93954395 -30121777 + (TA)n Simple_repeat Simple_repeat 2 66 0 6 1301 23 0 0 0 chr9 93954450 93954473 -30121699 + AT_rich Low_complexity Low_complexity 1 23 0 6 1301 4012 72 2 0 chr9 93957109 93957626 -30118546 + L1_Mus1 LINE L1 6050 6567 0 6 1301 1309 296 80 27 chr9 93957701 93958410 -30117762 + L1_Mur3 LINE L1 2173 2919 -2961 6 1301 183 167 0 0 chr9 93959134 93959176 -30116996 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1301 292 289 61 41 chr9 93960214 93960459 -30115713 + L1M5 LINE L1 5293 5542 -631 6 1301 765 92 0 0 chr9 93960493 93960613 -30115559 + (TG)n Simple_repeat Simple_repeat 2 121 0 6 1301 295 82 54 14 chr9 93964197 93964271 -30111901 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 1301 249 33 0 0 chr9 93964850 93964880 -30111292 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1301 420 284 136 0 chr9 93965567 93965743 -30110429 - ORR1E LTR MaLR -105 254 55 6 1301 590 298 61 81 chr9 93965923 93966120 -30110052 - B3 SINE B2 -17 199 7 6 1301 333 354 48 0 chr9 93966422 93966569 -30109603 + LTR16A LTR ERVL 277 430 -21 6 1301 571 342 31 11 chr9 93967481 93967741 -30108431 - MLT1C LTR MaLR -194 273 9 6 1301 258 394 22 40 chr9 93968021 93968246 -30107926 + MLT1N2 LTR MaLR 336 556 -6 6 1301 351 0 0 0 chr9 93970914 93970953 -30105219 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 6 1301 270 332 53 26 chr9 93971118 93971265 -30104907 + L2c LINE L2 3266 3426 0 6 1301 343 235 39 94 chr9 93971731 93971858 -30104314 + MT2B LTR ERVL 159 278 -323 6 1301 922 151 0 0 chr9 93971745 93971884 -30104288 + B1_Mur4 SINE Alu 11 149 -1 6 1301 396 0 0 0 chr9 93971900 93971944 -30104228 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1301 559 310 29 43 chr9 93972491 93972700 -30103472 + RMER15 LTR ERVL 336 541 -34 6 1301 255 250 42 139 chr9 93973272 93973416 -30102756 - RMER15 LTR ERVL -153 422 293 6 1301 21 0 0 0 chr9 93973581 93973602 -30102570 + AT_rich Low_complexity Low_complexity 1 21 0 6 1301 189 339 78 39 chr9 93973955 93974084 -30102088 - MER5A DNA MER1_type -14 175 42 6 1301 287 254 0 0 chr9 93974823 93974882 -30101290 - B4A SINE B4 -18 274 216 6 1301 1050 96 7 0 chr9 93974918 93975064 -30101108 - B1_Mus2 SINE Alu 0 147 1 6 1301 1852 200 123 20 chr9 93975073 93975521 -30100651 - Lx2B LINE L1 -4 6996 6503 6 1301 798 277 62 14 chr9 93975523 93975732 -30100440 - B4A SINE B4 -71 221 3 6 1301 215 238 0 0 chr9 93976082 93976124 -30100048 - BC1_Mm scRNA scRNA -101 51 10 6 1301 365 339 29 97 chr9 93976381 93976426 -30099746 + B4 SINE B4 41 186 -106 6 1301 671 257 0 7 chr9 93976426 93976575 -30099597 + B1_Mur3 SINE Alu 1 148 -1 6 1301 365 339 29 97 chr9 93976575 93976587 -30099585 + B4 SINE B4 187 232 -60 6 1301 1858 120 27 7 chr9 93977024 93977325 -30098847 - L1_Mus3 LINE L1 -4 6634 6328 6 1302 469 287 112 41 chr9 93979572 93979768 -30096404 - B3 SINE B2 -6 210 1 6 1302 771 284 151 28 chr9 93980091 93980813 -30095359 - L1M3 LINE L1 -1778 4362 3552 6 1302 291 239 0 15 chr9 93980815 93980883 -30095289 + ORR1D-int LTR MaLR 85 151 -1219 6 1302 279 333 0 11 chr9 93980880 93980974 -30095198 + ORR1D-int LTR MaLR 425 517 -853 6 1302 22 80 0 0 chr9 93981102 93981152 -30095020 + AT_rich Low_complexity Low_complexity 1 50 0 6 1302 232 241 75 12 chr9 93985726 93985806 -30090366 - MIRb SINE MIR -111 157 73 6 1302 937 297 44 14 chr9 93986328 93986693 -30089479 - MTEb LTR MaLR -2 377 2 6 1302 636 275 254 32 chr9 93986697 93987166 -30089006 + RMER15 LTR ERVL 1 573 -2 6 1302 1090 296 60 58 chr9 93987169 93987603 -30088569 - MTE-int LTR MaLR -6 1574 1140 6 1302 495 0 0 0 chr9 93987603 93987658 -30088514 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1302 618 221 130 0 chr9 93987658 93987812 -30088360 + MTEa LTR MaLR 204 377 -2 6 1302 801 289 35 9 chr9 93987814 93988044 -30088128 + MTEa-int LTR MaLR 1 236 -1344 6 1302 594 0 0 0 chr9 93988057 93988123 -30088049 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 1302 476 266 37 0 chr9 93988123 93988232 -30087940 - MTEb LTR MaLR -180 199 87 6 1302 291 233 45 72 chr9 93988227 93988338 -30087834 - RMER20B LTR ERVK -30 597 490 6 1302 677 333 70 15 chr9 93990226 93990638 -30085534 + L1MB2 LINE L1 5694 6128 -43 6 1302 520 216 126 0 chr9 93990638 93990749 -30085423 + B3 SINE B2 2 126 -90 6 1302 504 32 0 0 chr9 93990780 93990842 -30085330 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 6 1302 877 276 104 37 chr9 93991281 93991608 -30084564 - Lx8 LINE L1 -253 7220 6872 6 1302 222 37 0 0 chr9 93991608 93991635 -30084537 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1302 1690 183 57 9 chr9 93992057 93992372 -30083800 + MTB_Mm LTR MaLR 78 407 0 6 1302 275 176 0 39 chr9 93992782 93992859 -30083313 + T-rich Low_complexity Low_complexity 1 74 0 6 1302 1121 58 0 0 chr9 93992862 93993001 -30083171 - B1_Mm SINE Alu -8 139 1 6 1302 5234 181 86 31 chr9 93993392 93994578 -30081594 - MTB_Mm-int LTR MaLR -6 1252 2 6 1302 777 253 10 49 chr9 93994577 93994781 -30081391 - MTB_Mm LTR MaLR 0 407 212 6 1302 1156 96 18 0 chr9 93994884 93995051 -30081121 + B2_Mm2 SINE B2 1 170 -25 7 1302 461 65 326 0 chr9 93995066 93995168 -30081004 + B2_Mm2 SINE B2 46 186 -9 7 1302 481 294 0 0 chr9 93996676 93996802 -30079370 + L3b LINE CR1 132 257 -225 7 1302 207 100 0 0 chr9 93999808 93999838 -30076334 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1302 2615 43 0 3 chr9 94000298 94000621 -30075551 - L1_Mus1 LINE L1 0 6567 6246 1 1302 7418 148 23 37 chr9 94001028 94001634 -30074538 - Lx2 LINE L1 -11 6986 6394 2 1302 450 0 0 0 chr9 94001634 94001684 -30074488 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 3 1302 7418 148 23 37 chr9 94001684 94002164 -30074008 - Lx2 LINE L1 -604 6393 5924 2 1302 3814 116 48 99 chr9 94002164 94003016 -30073156 - RMER17D2 LTR ERVK 0 809 1 4 1302 7418 148 23 37 chr9 94003016 94003348 -30072824 - Lx2 LINE L1 -1074 5923 5589 2 1302 277 96 84 0 chr9 94003449 94003532 -30072640 + (TATAG)n Simple_repeat Simple_repeat 1 90 0 5 1302 268 178 65 22 chr9 94003558 94003650 -30072522 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 6 1302 480 72 58 105 chr9 94003652 94003823 -30072349 - HAL1-2a_MD LINE L1 -517 2507 2345 7 1302 240 77 58 0 chr9 94003939 94003991 -30072181 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 8 1302 2760 199 29 27 chr9 94004001 94004859 -30071313 + L1VL4 LINE L1 60 1085 -2530 9 1302 438 196 0 0 chr9 94005439 94005531 -30070641 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 1 1302 295 227 106 7 chr9 94005565 94005707 -30070465 + Lx9 LINE L1 7489 7644 0 1 1302 593 302 69 92 chr9 94006535 94006928 -30069244 + MLT1B LTR MaLR 2 385 -5 1 1302 892 268 70 4 chr9 94007239 94007512 -30068660 + B4A SINE B4 2 292 0 1 1302 312 299 66 22 chr9 94007846 94008027 -30068145 - CR1_Mam LINE CR1 -613 1591 1403 1 1302 246 350 106 53 chr9 94008177 94008385 -30067787 - ORR1E LTR MaLR -122 237 19 1 1302 310 336 40 24 chr9 94008360 94008485 -30067687 - ORR1E-int LTR MaLR -27 1553 1427 1 1302 594 315 35 29 chr9 94008495 94008703 -30067469 + B3A SINE B2 7 216 0 1 1302 1172 325 45 18 chr9 94008707 94009152 -30067020 - ORR1E-int LTR MaLR -171 1409 953 1 1302 2055 338 49 41 chr9 94009305 94010181 -30065991 - ORR1E-int LTR MaLR -631 949 67 1 1302 387 341 75 83 chr9 94010197 94010353 -30065819 - ORR1D2 LTR MaLR -10 360 204 1 1302 441 0 0 0 chr9 94010353 94010402 -30065770 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1302 387 341 75 83 chr9 94010402 94010606 -30065566 - ORR1D2 LTR MaLR -167 203 3 1 1302 4340 135 15 83 chr9 94011512 94012303 -30063869 + RMER19A LTR ERVK 1 737 0 1 1302 1137 252 164 52 chr9 94013202 94013624 -30062548 - RMER15 LTR ERVL -80 495 27 2 1302 5614 162 76 18 chr9 94014337 94016190 -30059982 - Lx3C LINE L1 -3 6973 5005 2 1302 405 260 60 0 chr9 94016670 94016770 -30059402 - PB1D7 SINE Alu -6 114 9 2 1302 286 307 65 30 chr9 94017130 94017362 -30058810 + MamRep605 Unknown Unknown 56 295 -581 2 1302 18833 106 158 64 chr9 94017455 94019143 -30057029 - L1Md_F2 LINE L1 -13 6569 4682 2 1302 345 309 7 35 chr9 94019143 94019287 -30056885 + RMER30 DNA MER1_type 18 157 -45 2 1302 225 353 39 82 chr9 94019161 94019343 -30056829 - Charlie12 DNA MER1_type -2698 175 2 2 1302 18833 106 158 64 chr9 94019343 94023371 -30052801 - L1Md_F2 LINE L1 -13 4681 174 2 1302 222 37 0 0 chr9 94023443 94023470 -30052702 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1302 1095 87 0 0 chr9 94023470 94023608 -30052564 - B1_Mus1 SINE Alu -10 138 1 2 1302 288 161 0 0 chr9 94023803 94023870 -30052302 + L1Md_F LINE L1 221 270 -6249 2 1302 465 211 9 9 chr9 94023870 94023975 -30052197 + MTEb LTR MaLR 260 364 -15 3 1302 627 203 70 0 chr9 94025786 94025914 -30050258 + B1_Mur4 SINE Alu 14 150 0 3 1302 485 340 126 37 chr9 94026017 94026520 -30049652 + MLT1E3 LTR MaLR 105 614 -10 3 1302 181 83 0 53 chr9 94027216 94027254 -30048918 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 3 1302 1421 210 100 9 chr9 94029061 94029411 -30046761 - ORR1C2 LTR MaLR -2 382 1 3 1302 352 309 91 18 chr9 94029825 94029990 -30046182 + MLT1L LTR MaLR 426 602 -8 3 1302 279 370 60 27 chr9 94030032 94030182 -30045990 - MLT1B LTR MaLR -16 374 220 3 1302 413 131 24 0 chr9 94030322 94030406 -30045766 + L1Md_F2 LINE L1 6496 6581 -1 3 1302 378 315 53 7 chr9 94031070 94031220 -30044952 - Lx6 LINE L1 -98 7362 7206 3 1302 25 51 0 0 chr9 94032086 94032125 -30044047 + AT_rich Low_complexity Low_complexity 1 39 0 3 1302 243 176 13 51 chr9 94032240 94032318 -30043854 + A-rich Low_complexity Low_complexity 2 76 0 4 1302 1024 273 70 24 chr9 94032329 94032746 -30043426 - Lx7 LINE L1 -377 7319 6884 4 1302 1844 201 38 24 chr9 94032751 94033235 -30042937 + RMER19C LTR ERVK 1 611 0 4 1302 1448 269 66 15 chr9 94033235 94033706 -30042466 - Lx7 LINE L1 -820 6876 6382 4 1302 402 198 114 76 chr9 94033910 94034041 -30042131 + B1F SINE Alu 1 136 -13 4 1302 423 0 0 0 chr9 94034074 94034121 -30042051 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1302 351 0 0 0 chr9 94035205 94035244 -30040928 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1302 582 236 85 0 chr9 94035738 94035903 -30040269 - RCHARR1 DNA MER1_type -16 958 780 4 1302 1116 243 179 0 chr9 94036143 94036472 -30039700 - MTD LTR MaLR 0 419 32 4 1302 395 331 87 49 chr9 94036831 94036864 -30039308 + ID_B1 SINE B4 58 169 -123 4 1302 475 295 31 8 chr9 94036864 94036994 -30039178 + B1F SINE Alu 10 142 -7 4 1302 395 331 87 49 chr9 94036994 94037015 -30039157 + ID_B1 SINE B4 170 248 -44 4 1302 28 29 0 0 chr9 94037033 94037068 -30039104 + AT_rich Low_complexity Low_complexity 1 35 0 5 1302 465 279 74 29 chr9 94037154 94037396 -30038776 + RMER20B LTR ERVK 155 399 -117 5 1302 420 369 12 18 chr9 94037785 94037956 -30038216 + MIRb SINE MIR 35 204 -64 5 1302 820 141 11 0 chr9 94038643 94038820 -30037352 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1302 243 0 0 0 chr9 94040476 94040503 -30035669 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1302 369 0 0 0 chr9 94040503 94040543 -30035629 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1302 2790 70 145 0 chr9 94040543 94040958 -30035214 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1302 411 160 0 0 chr9 94040977 94041052 -30035120 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 1302 279 0 0 0 chr9 94041052 94041083 -30035089 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1302 260 376 73 7 chr9 94043541 94043691 -30032481 - MER20B DNA MER1_type -616 167 8 5 1302 368 344 68 18 chr9 94044503 94044781 -30031391 + L1MEc LINE L1 1704 1995 -4405 6 1302 216 86 0 0 chr9 94044966 94045001 -30031171 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 1302 366 61 0 0 chr9 94045005 94045054 -30031118 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1302 1113 245 65 19 chr9 94045371 94045803 -30030369 - L1_Rod LINE L1 -6257 915 464 6 1302 10119 68 4 21 chr9 94045990 94047429 -30028743 - L1_Mm LINE L1 -190 5693 4280 6 1302 2989 57 14 34 chr9 94047430 94047845 -30028327 + L1Md_F2 LINE L1 6174 6580 -2 6 1302 33 56 0 0 chr9 94047862 94047916 -30028256 + AT_rich Low_complexity Low_complexity 1 54 0 6 1302 568 322 23 50 chr9 94047948 94048167 -30028005 + B4 SINE B4 74 286 -6 6 1302 25 0 0 0 chr9 94048573 94048598 -30027574 + AT_rich Low_complexity Low_complexity 1 25 0 6 1302 516 331 123 15 chr9 94049292 94049617 -30026555 + MLT1E2 LTR MaLR 100 459 -168 6 1302 180 0 0 0 chr9 94050598 94050618 -30025554 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1302 301 145 212 50 chr9 94052627 94052707 -30023465 + RLTR18 LTR ERVK 386 478 -138 7 1302 309 26 0 0 chr9 94052709 94052747 -30023425 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7 1302 5187 105 36 1 chr9 94052747 94053492 -30022680 - Lx3A LINE L1 -14 6967 6197 7 1302 2425 105 3 24 chr9 94053550 94053931 -30022241 - Lx LINE L1 0 6654 6282 7 1302 2300 186 49 12 chr9 94055050 94055560 -30020612 - Lx9 LINE L1 -561 7083 6555 7 1302 1676 202 125 0 chr9 94055560 94055991 -30020181 + Lx9 LINE L1 7144 7628 -16 7 1302 724 298 44 5 chr9 94056134 94056340 -30019832 + B3 SINE B2 3 216 0 7 1302 1300 231 52 46 chr9 94056708 94057076 -30019096 - ORR1D1 LTR MaLR -4 370 1 7 1302 2604 230 119 24 chr9 94057076 94057758 -30018414 - ORR1D1-int LTR MaLR 0 1370 624 7 1302 485 325 129 28 chr9 94057775 94058051 -30018121 + Lx9 LINE L1 7198 7469 -175 7 1302 390 42 0 0 chr9 94058051 94058099 -30018073 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1302 485 321 69 79 chr9 94058099 94058232 -30017940 + Lx9 LINE L1 7337 7598 -46 7 1302 498 33 0 0 chr9 94058389 94058449 -30017723 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 8 1302 233 209 190 90 chr9 94058913 94059013 -30017159 + MLT1D LTR MaLR 292 401 -104 8 1302 418 307 72 38 chr9 94059410 94059674 -30016498 + Lx8 LINE L1 6916 7188 -285 8 1302 7198 136 32 43 chr9 94059709 94060941 -30015231 + RMER12B LTR ERVK 1 1223 -181 8 1302 255 61 0 0 chr9 94060941 94060974 -30015198 + (TATG)n Simple_repeat Simple_repeat 1 33 0 8 1302 7198 132 170 0 chr9 94060974 94061027 -30015145 + RMER12B LTR ERVK 1157 1261 -143 8 1302 569 316 34 21 chr9 94061111 94061344 -30014828 - Lx9 LINE L1 -213 7431 7196 8 1302 2139 171 144 20 chr9 94061356 94061799 -30014373 + RMER5 LTR ERV1 1 498 -36 8 1302 217 213 42 21 chr9 94061800 94061896 -30014276 + (TTATA)n Simple_repeat Simple_repeat 5 102 0 8 1302 237 314 23 0 chr9 94061933 94062019 -30014153 - Lx9 LINE L1 -448 7196 7109 8 1302 25 0 0 0 chr9 94062411 94062436 -30013736 + AT_rich Low_complexity Low_complexity 1 25 0 8 1302 228 234 234 0 chr9 94063151 94063215 -30012957 + ID2 SINE ID 1 79 -4 8 1302 1193 39 7 0 chr9 94064124 94064278 -30011894 - L1Md_F2 LINE L1 -12 6570 6416 9 1302 923 135 6 0 chr9 94064398 94064554 -30011618 + (TTC)n Simple_repeat Simple_repeat 3 159 0 9 1302 194 299 109 80 chr9 94065339 94065477 -30010695 - L2c LINE L2 -45 3342 3201 9 1302 10515 57 0 0 chr9 94066076 94067457 -30008715 + L1Md_F2 LINE L1 4206 5586 -297 9 1302 8066 50 1 2 chr9 94067457 94068451 -30007721 + L1Md_F2 LINE L1 5587 6579 -3 9 1302 413 263 14 35 chr9 94068452 94068594 -30007578 + GA-rich Low_complexity Low_complexity 3 141 0 9 1302 237 324 0 0 chr9 94068913 94068981 -30007191 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1302 414 246 0 0 chr9 94068993 94069160 -30007012 + (CA)n Simple_repeat Simple_repeat 2 168 0 9 1302 261 228 0 0 chr9 94069201 94069280 -30006892 + (CA)n Simple_repeat Simple_repeat 1 79 0 9 1302 437 282 38 0 chr9 94069354 94069485 -30006687 - B1F SINE Alu -9 140 5 9 1302 333 0 0 0 chr9 94070532 94070569 -30005603 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1302 619 252 6 47 chr9 94070674 94070845 -30005327 + RSINE1 SINE B4 2 165 0 9 1302 785 92 0 16 chr9 94071065 94071186 -30004986 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 9 1302 406 288 116 6 chr9 94071543 94071707 -30004465 + B3A SINE B2 17 198 0 1 1302 2424 116 98 38 chr9 94072258 94072706 -30003466 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1302 658 262 14 82 chr9 94073797 94074005 -30002167 + B3A SINE B2 1 194 -4 1 1302 822 194 297 3 chr9 94074871 94075183 -30000989 - MTD LTR MaLR -2 417 14 1 1302 313 229 9 9 chr9 94076006 94076112 -30000060 + GA-rich Low_complexity Low_complexity 3 108 0 1 1302 1416 66 0 0 chr9 94076561 94076744 -29999428 + L1Md_T LINE L1 6400 6582 0 1 1302 22 35 0 0 chr9 94076914 94076943 -29999229 + AT_rich Low_complexity Low_complexity 1 29 0 1 1302 261 0 0 0 chr9 94077588 94077617 -29998555 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1302 1290 276 76 9 chr9 94077911 94078346 -29997826 + Lx6 LINE L1 6968 7431 -29 1 1302 869 262 57 141 chr9 94078427 94078459 -29997713 - RLTR12B LTR ERVK -34 494 467 1 1302 3122 11 0 3 chr9 94078459 94078806 -29997366 + ORR1A0 LTR MaLR 1 346 0 1 1302 869 262 57 141 chr9 94078806 94079261 -29996911 - RLTR12B LTR ERVK -62 466 48 1 1302 1354 264 61 5 chr9 94080515 94080911 -29995261 + MTD LTR MaLR 1 418 -1 1 1302 291 253 65 21 chr9 94081406 94081499 -29994673 + PB1D10 SINE Alu 21 117 0 1 1302 301 0 8 128 chr9 94081678 94081803 -29994369 + (CA)n Simple_repeat Simple_repeat 1 110 0 1 1302 396 59 0 0 chr9 94082544 94082595 -29993577 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1302 732 265 115 16 chr9 94082625 94082878 -29993294 - B4A SINE B4 -14 278 1 1 1302 642 113 0 0 chr9 94084979 94085085 -29991087 + (GA)n Simple_repeat Simple_repeat 1 106 0 1 1302 246 306 128 12 chr9 94087402 94087488 -29988684 + PB1D10 SINE Alu 14 109 -8 1 1302 1163 75 0 0 chr9 94087618 94087765 -29988407 + B1_Mm SINE Alu 1 147 0 1 1302 1322 62 6 0 chr9 94087768 94087945 -29988227 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 1 1302 423 0 0 0 chr9 94087945 94087992 -29988180 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 1 1302 480 35 0 0 chr9 94087992 94088050 -29988122 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1302 493 326 70 38 chr9 94088102 94088287 -29987885 + ID_B1 SINE B4 2 192 -32 1 1302 315 238 32 0 chr9 94088322 94088385 -29987787 + ID_B1 SINE B4 152 216 -8 1 1302 997 203 35 20 chr9 94088637 94088838 -29987334 + B3 SINE B2 13 216 0 1 1302 193 324 108 20 chr9 94089669 94089817 -29986355 + L3 LINE CR1 4214 4374 -115 1 1302 287 290 102 9 chr9 94090010 94090118 -29986054 - MIR SINE MIR -121 141 24 1 1302 6392 181 43 8 chr9 94090574 94092001 -29984171 - Lx3C LINE L1 -2 6974 5495 1 1302 5103 151 31 6 chr9 94091999 94092979 -29983193 + L1_Mur2 LINE L1 3726 4729 -1148 1 1302 374 349 57 65 chr9 94093319 94093567 -29982605 + MLT1A0 LTR MaLR 3 248 -117 1 1302 209 351 13 13 chr9 94093934 94094009 -29982163 + MIRb SINE MIR 15 89 -179 1 1302 198 103 0 0 chr9 94094160 94094189 -29981983 + (TGG)n Simple_repeat Simple_repeat 3 31 0 1 1302 194 398 62 0 chr9 94094450 94094563 -29981609 + MER5A DNA MER1_type 1 120 -69 1 1302 182 260 76 76 chr9 94094675 94094754 -29981418 + L2 LINE L2 1458 1536 -1883 1 1302 274 214 109 33 chr9 94094923 94095015 -29981157 + MER34A LTR ERV1 2 100 -471 1 1302 225 302 19 86 chr9 94095476 94095581 -29980591 + LTR48B LTR ERV1 544 641 -3 1 1302 297 0 0 0 chr9 94095676 94095709 -29980463 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1302 324 0 0 0 chr9 94095709 94095745 -29980427 + (TATG)n Simple_repeat Simple_repeat 2 37 0 1 1302 389 237 133 10 chr9 94095750 94095848 -29980324 + B3 SINE B2 102 211 -5 1 1302 216 423 0 0 chr9 94096674 94096685 -29979487 + ID SINE ID 74 84 -140 1 1302 329 337 33 0 chr9 94096685 94096777 -29979395 + B1F SINE Alu 4 98 -51 1 1302 279 157 0 0 chr9 94096871 94096922 -29979250 + G-rich Low_complexity Low_complexity 3 53 0 1 1302 5408 95 0 16 chr9 94097498 94098266 -29977906 - L1Md_F2 LINE L1 0 6582 5827 1 1302 461 17 17 0 chr9 94098400 94098458 -29977714 + (TATG)n Simple_repeat Simple_repeat 1 59 0 1 1302 25 0 0 0 chr9 94098851 94098876 -29977296 + AT_rich Low_complexity Low_complexity 1 25 0 1 1302 357 24 0 0 chr9 94098939 94098981 -29977191 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1302 1631 190 147 13 chr9 94099264 94099658 -29976514 - RMER13A LTR ERVK -413 447 1 1 1302 1755 281 54 37 chr9 94101369 94102456 -29973716 + L1M2 LINE L1 4098 5203 -940 1 1302 630 167 6 17 chr9 94102466 94102643 -29973529 + (TTAGGG)n Simple_repeat Simple_repeat 2 176 0 1 1302 588 249 121 78 chr9 94104090 94104171 -29972001 + MER31A LTR ERV1 3 98 -387 1 1302 546 63 0 0 chr9 94104171 94104250 -29971922 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1302 588 249 121 78 chr9 94104250 94104499 -29971673 + MER31A LTR ERV1 99 347 -138 1 1302 661 229 8 0 chr9 94104651 94104773 -29971399 - B3 SINE B2 -85 131 9 1 1302 1043 0 0 0 chr9 94104999 94105126 -29971046 - L1Md_T LINE L1 0 6582 6456 1 1302 223 356 0 14 chr9 94105443 94105517 -29970655 - L4 LINE RTE -218 1811 1739 1 1302 611 90 10 0 chr9 94106148 94106248 -29969924 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1302 25 83 0 0 chr9 94106768 94106828 -29969344 + AT_rich Low_complexity Low_complexity 1 60 0 1 1302 408 20 0 0 chr9 94107289 94107338 -29968834 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1302 396 0 0 0 chr9 94107640 94107684 -29968488 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1302 207 0 0 0 chr9 94108037 94108060 -29968112 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 1 1302 496 299 12 71 chr9 94109082 94109251 -29966921 + B3A SINE B2 40 198 0 1 1303 605 280 42 11 chr9 94109735 94109995 -29966177 - L1MA6 LINE L1 0 6300 6033 1 1303 495 0 0 0 chr9 94110333 94110388 -29965784 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1303 233 246 43 14 chr9 94110486 94110556 -29965616 - PB1 SINE Alu -6 121 50 1 1303 212 246 14 0 chr9 94110565 94110634 -29965538 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1303 218 338 103 101 chr9 94110967 94111355 -29964817 + L2 LINE L2 236 624 -2795 1 1303 2096 269 40 62 chr9 94111712 94112428 -29963744 + RCHARR1 DNA MER1_type 40 740 -234 1 1303 928 255 0 25 chr9 94112649 94112890 -29963282 + RCHARR1 DNA MER1_type 740 974 0 1 1303 229 47 64 85 chr9 94113372 94113419 -29962753 + MIRc SINE MIR 93 138 -130 1 1303 816 80 0 0 chr9 94116004 94116117 -29960055 + L1_Mus2 LINE L1 6453 6565 -1 1 1303 375 329 65 13 chr9 94116426 94116657 -29959515 - L1MC2 LINE L1 -400 5944 5702 1 1303 688 286 59 80 chr9 94116711 94116947 -29959225 - MTEb LTR MaLR 0 379 149 1 1303 1124 272 120 19 chr9 94116947 94117322 -29958850 - MTD LTR MaLR -1 418 6 1 1303 596 265 0 0 chr9 94117322 94117439 -29958733 - MTEb LTR MaLR -262 117 1 1 1303 11847 15 1 1 chr9 94117559 94118986 -29957186 + L1Md_T LINE L1 4159 5585 -298 1 1303 8456 35 0 0 chr9 94118987 94119983 -29956189 + L1Md_T LINE L1 5587 6582 0 1 1303 1459 189 32 7 chr9 94120004 94120286 -29955886 + ORR1B2 LTR MaLR 79 367 0 1 1303 333 268 0 44 chr9 94120286 94120364 -29955808 + B1F2 SINE Alu 39 112 -37 1 1303 529 313 0 30 chr9 94120637 94120805 -29955367 - B3A SINE B2 -26 172 10 1 1303 231 327 26 13 chr9 94121169 94121321 -29954851 - L1M5 LINE L1 -1462 4684 4531 1 1303 302 67 22 0 chr9 94121581 94121626 -29954546 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1 1303 343 273 242 24 chr9 94121702 94121950 -29954222 - L1M5 LINE L1 -2057 4089 3788 1 1303 272 262 35 11 chr9 94122010 94122198 -29953974 - L1M5 LINE L1 -2475 3668 3478 1 1303 347 298 93 4 chr9 94122485 94122841 -29953331 - L1M5 LINE L1 -3087 3059 2668 1 1303 21 0 0 0 chr9 94122930 94122951 -29953221 + AT_rich Low_complexity Low_complexity 1 21 0 1 1303 718 178 0 30 chr9 94123226 94123394 -29952778 + Lx3A LINE L1 6819 6981 0 1 1303 344 206 0 93 chr9 94124056 94124131 -29952041 - B3 SINE B2 -143 73 6 1 1303 228 111 0 0 chr9 94124186 94124222 -29951950 + (TTGG)n Simple_repeat Simple_repeat 1 36 0 1 1303 204 111 0 0 chr9 94124225 94124261 -29951911 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1 1303 320 275 12 0 chr9 94124323 94124403 -29951769 - B1F SINE Alu -1 148 68 1 1303 442 335 0 0 chr9 94124411 94124563 -29951609 + RSINE1 SINE B4 4 155 -10 1 1303 4560 55 0 2 chr9 94124897 94125460 -29950712 + L1Md_F2 LINE L1 6019 6580 -2 1 1303 2108 111 51 3 chr9 94126593 94126944 -29949228 - L1_Mus4 LINE L1 -25 6611 6244 1 1303 269 228 13 0 chr9 94127786 94127865 -29948307 + CT-rich Low_complexity Low_complexity 3 82 0 1 1303 287 85 0 21 chr9 94127969 94128017 -29948155 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1303 524 226 22 14 chr9 94128043 94128182 -29947990 - Lx7 LINE L1 -420 7276 7137 1 1303 425 337 51 65 chr9 94129162 94129372 -29946800 + ORR1E LTR MaLR 52 258 -101 1 1303 5085 81 35 3 chr9 94129372 94130067 -29946105 + L1_Mus4 LINE L1 5917 6633 -3 1 1303 425 337 51 65 chr9 94130067 94130148 -29946024 + ORR1E LTR MaLR 259 339 -20 1 1303 3103 206 31 5 chr9 94130205 94130809 -29945363 + MTD-int LTR MaLR 746 1365 -5 1 1303 572 239 8 0 chr9 94130896 94131025 -29945147 + MTD LTR MaLR 1 130 -289 1 1303 1918 229 22 5 chr9 94131025 94131429 -29944743 + MTD LTR MaLR 1 411 -8 1 1303 326 229 229 0 chr9 94131436 94131541 -29944631 + MTD LTR MaLR 129 257 -164 1 1303 588 29 0 0 chr9 94132513 94132583 -29943589 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1303 232 391 23 0 chr9 94133295 94133423 -29942749 - LTR88c LTR Genie? -709 153 23 1 1303 377 298 65 26 chr9 94134974 94135129 -29941043 - MIRb SINE MIR -6 262 102 1 1303 348 235 29 58 chr9 94135175 94135279 -29940893 + B1F SINE Alu 15 115 -34 1 1303 230 259 11 110 chr9 94135307 94135398 -29940774 + ID4_ SINE ID 2 83 0 1 1303 634 377 4 38 chr9 94137766 94138006 -29938166 + Tigger5 DNA MER2_type 4 235 -2171 1 1303 257 265 193 0 chr9 94137992 94138075 -29938097 + Tigger5 DNA MER2_type 2297 2395 -11 1 1303 270 141 23 23 chr9 94139248 94139335 -29936837 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 1 1303 245 27 0 51 chr9 94139399 94139438 -29936734 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 2 1303 1574 27 11 0 chr9 94139681 94139864 -29936308 + B2_Mm2 SINE B2 2 186 -9 2 1303 300 292 14 0 chr9 94140153 94140225 -29935947 - MER5A DNA MER1_type -116 73 1 2 1303 791 189 0 8 chr9 94141251 94141384 -29934788 - URR1B DNA MER1_type -92 133 2 2 1303 614 145 7 21 chr9 94141919 94142022 -29934150 + (CA)n Simple_repeat Simple_repeat 2 104 0 2 1303 971 117 6 22 chr9 94142022 94142205 -29933967 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2 1303 614 145 7 21 chr9 94142205 94142242 -29933930 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1303 546 43 0 0 chr9 94143325 94143394 -29932778 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1303 301 271 39 0 chr9 94146871 94146988 -29929184 + ID_B1 SINE B4 3 187 -37 2 1303 21 0 0 0 chr9 94146988 94147009 -29929163 + AT_rich Low_complexity Low_complexity 1 21 0 2 1303 8339 118 19 9 chr9 94149053 94150736 -29925436 - Lx3A LINE L1 0 6981 5284 2 1303 285 51 0 0 chr9 94150736 94150775 -29925397 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2 1303 8339 76 15 11 chr9 94150775 94151388 -29924784 - Lx3A LINE L1 -603 5283 4669 2 1303 858 238 136 52 chr9 94151468 94151804 -29924368 - MTD LTR MaLR -15 406 18 2 1303 204 133 21 43 chr9 94151813 94151860 -29924312 + A-rich Low_complexity Low_complexity 2 47 0 2 1303 450 0 0 0 chr9 94152411 94152461 -29923711 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1303 22 35 0 0 chr9 94152690 94152719 -29923453 + AT_rich Low_complexity Low_complexity 1 29 0 2 1303 261 0 0 0 chr9 94154564 94154593 -29921579 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1303 237 33 0 0 chr9 94154593 94154622 -29921550 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1303 2979 75 0 5 chr9 94154958 94155371 -29920801 - Lx LINE L1 -609 6045 5635 2 1303 3738 127 23 30 chr9 94155371 94155978 -29920194 + Lx LINE L1 6033 6635 -19 2 1303 29 0 0 0 chr9 94155978 94156007 -29920165 + AT_rich Low_complexity Low_complexity 1 29 0 2 1303 393 141 0 0 chr9 94156510 94156581 -29919591 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1303 762 282 73 0 chr9 94157785 94157949 -29918223 + B3 SINE B2 2 178 -38 2 1303 1365 226 0 8 chr9 94157949 94158216 -29917956 + RLTR18B LTR ERVK 1 265 -247 2 1303 1479 142 31 135 chr9 94158214 94158532 -29917640 + RLTR18B LTR ERVK 222 506 -6 2 1303 6356 128 36 2 chr9 94159542 94160663 -29915509 - Lx LINE L1 0 6654 5482 2 1303 290 233 13 27 chr9 94162319 94162394 -29913778 + RMER15 LTR ERVL 336 409 -166 2 1303 414 0 0 0 chr9 94162939 94162985 -29913187 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 1303 362 277 19 102 chr9 94163423 94163580 -29912592 + RMER15 LTR ERVL 432 575 0 2 1303 5064 240 99 30 chr9 94168561 94170412 -29905760 - Lx9 LINE L1 -78 7566 5587 2 1303 4843 133 58 14 chr9 94170416 94171284 -29904888 - RMER17A2 LTR ERVK 0 906 1 2 1303 1239 131 4 47 chr9 94171284 94171516 -29904656 - Lx9 LINE L1 -292 5555 5334 2 1303 1195 57 17 0 chr9 94171516 94171692 -29904480 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 2 1303 267 152 0 0 chr9 94171734 94171780 -29904392 + CT-rich Low_complexity Low_complexity 1 46 0 2 1303 347 197 35 52 chr9 94172917 94173043 -29903129 - MLT1B LTR MaLR -8 382 276 2 1303 242 329 59 107 chr9 94173116 94173303 -29902869 - MLT1B LTR MaLR -174 200 23 2 1303 201 175 0 0 chr9 94175150 94175190 -29900982 + T-rich Low_complexity Low_complexity 1 40 0 2 1303 1124 61 0 39 chr9 94175497 94175650 -29900522 + B1_Mm SINE Alu 1 147 0 2 1303 257 265 31 0 chr9 94175909 94176007 -29900165 + L1MA4A LINE L1 5137 5237 -906 2 1303 241 111 0 0 chr9 94176225 94176261 -29899911 - L1_Mus4 LINE L1 -455 6181 6146 2 1303 4077 89 78 5 chr9 94176261 94176867 -29899305 + L1_Mus3 LINE L1 5982 6631 -7 2 1303 498 302 49 36 chr9 94176884 94177170 -29899002 + L1MA4A LINE L1 5648 5939 -217 2 1303 605 49 0 12 chr9 94177494 94177576 -29898596 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 2 1303 506 375 51 35 chr9 94178075 94178387 -29897785 + ORR1D2 LTR MaLR 3 319 -51 2 1303 244 368 13 0 chr9 94178892 94178968 -29897204 + ID4_ SINE ID 4 80 -3 2 1303 842 215 6 0 chr9 94179333 94179496 -29896676 + U1 snRNA snRNA 1 164 -1 2 1303 906 175 7 0 chr9 94179793 94179936 -29896236 - B1_Mur4 SINE Alu -6 144 1 2 1303 423 325 63 49 chr9 94180784 94181007 -29895165 - RMER15 LTR ERVL -15 560 335 2 1303 309 292 25 106 chr9 94180996 94181195 -29894977 - RMER15 LTR ERVL -392 183 1 2 1303 1062 319 97 22 chr9 94181362 94181999 -29894173 + Charlie25 DNA MER1_type 35 719 -1805 2 1303 398 234 91 28 chr9 94182369 94182545 -29893627 - L1M5 LINE L1 -2153 3993 3807 2 1303 1486 296 58 26 chr9 94182629 94183160 -29893012 + Tigger7 DNA MER2_type 9 556 -1935 2 1303 226 122 0 58 chr9 94184030 94184082 -29892090 + GA-rich Low_complexity Low_complexity 1 49 0 2 1303 1082 96 0 0 chr9 94184876 94185022 -29891150 + B1_Mus1 SINE Alu 3 148 0 2 1303 243 192 0 0 chr9 94185023 94185096 -29891076 + A-rich Low_complexity Low_complexity 1 73 0 2 1303 183 182 30 0 chr9 94187495 94187528 -29888644 - L2c LINE L2 -252 3135 3102 2 1303 436 287 25 34 chr9 94187595 94187714 -29888458 - ORR1E LTR MaLR -236 123 6 2 1303 670 300 67 78 chr9 94188260 94188289 -29887883 + B4 SINE B4 2 30 -262 2 1303 2089 139 55 0 chr9 94188289 94188635 -29887537 - RLTR8 LTR ERVK 0 365 1 2 1303 670 300 67 78 chr9 94188635 94188887 -29887285 + B4 SINE B4 31 280 -12 2 1303 231 208 0 20 chr9 94188888 94188937 -29887235 + (CATG)n Simple_repeat Simple_repeat 1 48 0 2 1303 375 139 28 0 chr9 94189159 94189231 -29886941 - Lx9 LINE L1 -7 7637 7564 2 1303 242 233 14 0 chr9 94189383 94189456 -29886716 + (TA)n Simple_repeat Simple_repeat 1 74 0 2 1303 207 0 0 0 chr9 94189580 94189603 -29886569 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1303 183 42 0 0 chr9 94191783 94191807 -29884365 + (TTAG)n Simple_repeat Simple_repeat 1 24 0 2 1303 190 266 141 0 chr9 94192085 94192149 -29884023 + L3 LINE CR1 2959 3031 -1458 2 1303 721 271 25 35 chr9 94192356 94192555 -29883617 + B3A SINE B2 1 197 -1 2 1303 22 0 0 0 chr9 94192576 94192598 -29883574 + AT_rich Low_complexity Low_complexity 1 22 0 2 1303 247 312 149 11 chr9 94193166 94193341 -29882831 + Tigger15a DNA TcMar 505 703 -12 2 1303 195 42 0 0 chr9 94193780 94193804 -29882368 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1303 276 30 0 0 chr9 94193804 94193836 -29882336 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 1303 26 50 0 0 chr9 94194340 94194380 -29881792 + AT_rich Low_complexity Low_complexity 1 40 0 2 1303 426 303 37 122 chr9 94194492 94194706 -29881466 + B4A SINE B4 2 197 -95 2 1303 1964 171 11 20 chr9 94196835 94197192 -29878980 + RLTR15 LTR ERVK 6 359 0 2 1303 31 0 0 0 chr9 94198300 94198331 -29877841 + AT_rich Low_complexity Low_complexity 1 31 0 2 1303 506 219 78 54 chr9 94198392 94198596 -29877576 + B3 SINE B2 6 195 0 2 1303 1075 108 23 0 chr9 94198600 94198776 -29877396 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1303 189 0 0 0 chr9 94198776 94198797 -29877375 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 2 1303 947 150 0 64 chr9 94198803 94198974 -29877198 + B2_Mm2 SINE B2 2 161 -34 2 1303 225 0 0 0 chr9 94198974 94198999 -29877173 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2 1303 690 47 0 0 chr9 94199011 94199097 -29877075 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 2 1303 7114 141 21 57 chr9 94199098 94200524 -29875648 - Lx3C LINE L1 -214 5672 4298 2 1303 2393 157 39 4 chr9 94200520 94200913 -29875259 + Lx3C LINE L1 5638 6042 -934 2 1303 803 20 20 0 chr9 94200913 94201013 -29875159 + (GGGA)n Simple_repeat Simple_repeat 3 104 0 2 1303 2393 157 39 4 chr9 94201013 94201080 -29875092 + Lx3C LINE L1 6043 6113 -863 2 1303 23 54 0 0 chr9 94201080 94201117 -29875055 + AT_rich Low_complexity Low_complexity 1 37 0 2 1303 319 390 0 8 chr9 94201135 94201259 -29874913 - MLT1A1 LTR MaLR 0 408 286 2 1303 232 211 0 0 chr9 94201993 94202031 -29874141 - B1_Mur4 SINE Alu -112 38 1 2 1303 399 283 9 0 chr9 94202076 94202189 -29873983 + PB1D10 SINE Alu 2 115 -2 2 1303 257 197 0 15 chr9 94202268 94202335 -29873837 + (TATG)n Simple_repeat Simple_repeat 1 66 0 2 1303 365 331 70 35 chr9 94202587 94202903 -29873269 + L1MC4a LINE L1 5571 5897 -1985 2 1303 24 67 0 0 chr9 94203064 94203109 -29873063 + AT_rich Low_complexity Low_complexity 1 45 0 2 1303 343 321 66 19 chr9 94203287 94203500 -29872672 + L1MC4a LINE L1 6654 6876 -1085 2 1303 1678 238 97 47 chr9 94203520 94203604 -29872568 - RLTR20C LTR ERVK 0 534 433 2 1303 480 48 0 0 chr9 94203604 94203667 -29872505 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1303 1678 238 97 47 chr9 94203667 94204090 -29872082 - RLTR20C LTR ERVK -102 432 2 2 1303 243 0 0 0 chr9 94204267 94204294 -29871878 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1303 38559 17 2 8 chr9 94204295 94210059 -29866113 - L1Md_A LINE L1 -450 6132 406 2 1303 841 302 115 16 chr9 94210615 94210928 -29865244 - MTE2b LTR MaLR -3 376 33 2 1303 1716 274 55 29 chr9 94210963 94211489 -29864683 - MTE-int LTR MaLR -2 1578 1039 2 1303 843 157 62 28 chr9 94212416 94212593 -29863579 - RMER17C LTR ERVK -9 401 219 2 1303 3499 23 0 2 chr9 94212610 94213007 -29863165 + MTA_Mm LTR MaLR 1 396 0 2 1303 925 244 118 112 chr9 94213190 94213564 -29862608 + MTE2a LTR MaLR 4 379 0 2 1303 492 308 39 43 chr9 94213631 94213838 -29862334 + Tigger7 DNA MER2_type 2283 2488 -3 2 1303 649 240 14 19 chr9 94237208 94237420 -29838752 - L1M2 LINE L1 -2260 3883 3673 2 1303 633 286 7 7 chr9 94237464 94237605 -29838567 - ID_B1 SINE B4 0 224 84 2 1303 570 336 34 33 chr9 94237618 94238289 -29837883 - L1M2 LINE L1 -2532 3614 2943 2 1303 423 0 0 0 chr9 94238381 94238428 -29837744 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1303 1107 250 29 4 chr9 94238534 94238811 -29837361 + Lx9 LINE L1 6580 6863 -781 2 1303 292 271 0 12 chr9 94238861 94238947 -29837225 + Lx9 LINE L1 6851 6935 -709 2 1303 991 69 13 58 chr9 94238968 94239032 -29837140 - B1_Mus2 SINE Alu 0 147 87 2 1303 3128 62 15 5 chr9 94239032 94239439 -29836733 + RLTR10A LTR ERVK 1 411 0 2 1303 991 69 13 58 chr9 94239439 94239528 -29836644 - B1_Mus2 SINE Alu -61 86 1 2 1304 3224 44 7 10 chr9 94241468 94241878 -29834294 + L1Md_F3 LINE L1 6176 6584 0 2 1304 198 71 0 0 chr9 94241987 94242015 -29834157 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 2 1304 4652 50 0 0 chr9 94242867 94243424 -29832748 + L1_Mus1 LINE L1 6011 6567 0 3 1304 365 157 97 43 chr9 94243924 94244017 -29832155 + MTEa LTR MaLR 282 379 0 3 1304 21 36 0 0 chr9 94244107 94244135 -29832037 + AT_rich Low_complexity Low_complexity 1 28 0 3 1304 32 0 0 0 chr9 94244238 94244270 -29831902 + AT_rich Low_complexity Low_complexity 1 32 0 3 1304 2559 129 10 17 chr9 94244399 94244809 -29831363 - MTB_Mm LTR MaLR 0 407 1 3 1304 574 274 57 77 chr9 94244809 94245109 -29831063 + Lx8 LINE L1 7178 7471 -2 3 1304 21 71 0 0 chr9 94245117 94245159 -29831013 + AT_rich Low_complexity Low_complexity 1 42 0 3 1304 704 246 32 81 chr9 94245205 94245426 -29830746 + B3 SINE B2 2 211 -5 3 1304 450 287 9 9 chr9 94245568 94245684 -29830488 - PB1D10 SINE Alu -1 116 1 3 1304 1753 172 103 32 chr9 94245917 94246428 -29829744 - RMER4A LTR ERVK 0 585 30 3 1304 7121 72 5 6 chr9 94246428 94247473 -29828699 - L1Md_F2 LINE L1 -20 6562 5519 3 1304 1832 207 17 22 chr9 94247840 94248201 -29827971 - ORR1D1 LTR MaLR -3 371 13 3 1304 588 249 237 0 chr9 94248240 94248409 -29827763 + B3 SINE B2 4 212 -4 3 1304 340 349 160 19 chr9 94248614 94248932 -29827240 + LTR16B1 LTR ERVL 2 364 -116 3 1304 228 211 0 0 chr9 94249988 94250059 -29826113 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1304 260 370 0 21 chr9 94250328 94250422 -29825750 + MER5A1 DNA MER1_type 69 160 -6 3 1304 30174 124 13 30 chr9 94251430 94253200 -29822972 + L1Md_F2 LINE L1 214 1958 -3925 3 1304 198 0 0 0 chr9 94253200 94253222 -29822950 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1304 30174 74 5 15 chr9 94253222 94256889 -29819283 + L1Md_F2 LINE L1 1959 5585 -298 3 1304 7608 57 17 10 chr9 94256889 94257871 -29818301 + L1Md_F2 LINE L1 5587 6575 -7 3 1304 2185 306 40 40 chr9 94259064 94259943 -29816229 - Lx5 LINE L1 -4 7046 6168 3 1304 218 365 96 7 chr9 94260324 94260470 -29815702 - MIRb SINE MIR -100 168 10 3 1304 194 333 93 10 chr9 94260523 94260620 -29815552 - L2b LINE L2 -33 3342 3238 3 1304 359 145 16 57 chr9 94263526 94263548 -29812624 + (CAGAGA)n Simple_repeat Simple_repeat 6 29 0 3 1304 885 122 3 0 chr9 94263548 94263852 -29812320 + (CA)n Simple_repeat Simple_repeat 1 305 0 3 1304 359 145 16 57 chr9 94263852 94263951 -29812221 + (CAGAGA)n Simple_repeat Simple_repeat 6 98 0 3 1304 294 300 100 0 chr9 94264082 94264212 -29811960 + MIR SINE MIR 108 250 -12 3 1304 2052 329 91 25 chr9 94264370 94265585 -29810587 - Lx8 LINE L1 -6 7467 6172 3 1304 1552 316 81 28 chr9 94266292 94267734 -29808438 - L1M2 LINE L1 -10 5870 4348 3 1304 354 172 252 0 chr9 94267765 94267864 -29808308 + RLTR15 LTR ERVK 1 124 -235 3 1304 1028 269 91 30 chr9 94268051 94268245 -29807927 - RLTR11A2 LTR ERVK -27 500 304 3 1304 4026 160 170 31 chr9 94268245 94269105 -29807067 - RLTR13C1 LTR ERVK -4 979 1 3 1304 1028 270 108 31 chr9 94269105 94269360 -29806812 - RLTR11A2 LTR ERVK -224 303 5 3 1304 275 286 31 16 chr9 94269368 94269496 -29806676 - L1M2 LINE L1 -1547 4333 4204 3 1304 774 0 0 0 chr9 94269655 94269741 -29806431 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 1304 252 256 0 0 chr9 94270008 94270019 -29806153 + polypyrimidine Low_complexity Low_complexity 68 78 0 3 1304 1199 6 0 53 chr9 94270019 94270209 -29805963 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1304 252 256 0 0 chr9 94270209 94270275 -29805897 + CT-rich Low_complexity Low_complexity 2 67 0 3 1304 338 0 24 0 chr9 94270518 94270560 -29805612 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1304 221 341 0 35 chr9 94271287 94271372 -29804800 + MER5A DNA MER1_type 1 82 -107 3 1304 474 83 0 0 chr9 94271727 94271799 -29804373 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 3 1304 405 39 0 0 chr9 94271855 94271906 -29804266 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1304 2191 41 3 85 chr9 94272027 94272345 -29803827 - L1_Mus2 LINE L1 0 6566 6275 3 1304 783 50 0 0 chr9 94272345 94272444 -29803728 + L1_Mus2 LINE L1 6190 6288 -278 3 1304 27 0 0 0 chr9 94273578 94273605 -29802567 + AT_rich Low_complexity Low_complexity 1 27 0 3 1304 618 285 45 25 chr9 94274480 94274678 -29801494 - MTE2a LTR MaLR -2 377 176 3 1304 556 285 0 42 chr9 94274635 94274778 -29801394 + MTE2a LTR MaLR 173 309 -70 3 1304 1614 324 72 26 chr9 94274790 94275312 -29800860 + MTE-int LTR MaLR 810 1353 -227 3 1304 273 57 0 0 chr9 94275312 94275347 -29800825 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 3 1304 1614 324 72 26 chr9 94275347 94275404 -29800768 + MTE-int LTR MaLR 1354 1415 -165 3 1304 2460 36 3 19 chr9 94275470 94275783 -29800389 + L1Md_F3 LINE L1 6275 6582 -2 3 1304 29 60 0 0 chr9 94276281 94276331 -29799841 + AT_rich Low_complexity Low_complexity 1 50 0 3 1304 1426 281 16 49 chr9 94276394 94276779 -29799393 + MTE2a LTR MaLR 8 379 0 3 1304 250 356 0 33 chr9 94276817 94276828 -29799344 + ID SINE ID 74 81 -143 3 1304 308 341 0 24 chr9 94276828 94276912 -29799260 + PB1D10 SINE Alu 3 84 -33 3 1304 441 0 0 0 chr9 94277146 94277195 -29798977 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1304 198 0 0 0 chr9 94277195 94277216 -29798956 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1304 606 109 0 0 chr9 94277216 94277326 -29798846 + (GA)n Simple_repeat Simple_repeat 2 111 0 3 1304 315 104 0 0 chr9 94279967 94280015 -29796157 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1304 308 352 101 41 chr9 94280996 94281215 -29794957 + MLT1D LTR MaLR 25 256 -109 3 1304 258 186 0 0 chr9 94281402 94281445 -29794727 - MTC LTR MaLR -2 419 377 3 1304 3024 185 45 27 chr9 94281448 94282048 -29794124 + RLTR18 LTR ERVK 6 616 0 3 1304 2118 184 33 5 chr9 94282048 94282415 -29793757 - MTC LTR MaLR -37 384 8 3 1304 328 281 79 0 chr9 94282457 94282571 -29793601 + MLT1D LTR MaLR 381 503 -2 3 1304 347 286 132 34 chr9 94282993 94283228 -29792944 + MER113 DNA MER1_type 44 301 -220 3 1304 1273 277 96 26 chr9 94283272 94283739 -29792433 - Lx8 LINE L1 -2 7471 6972 3 1304 6504 44 5 1 chr9 94283739 94284487 -29791685 - L1Md_F3 LINE L1 -1 6583 5833 3 1304 3064 57 0 0 chr9 94284487 94284856 -29791316 + L1Md_F3 LINE L1 5473 5841 -42 3 1304 2129 310 47 15 chr9 94284852 94285599 -29790573 - Lx8 LINE L1 -493 6980 6210 3 1304 334 169 14 31 chr9 94285597 94285681 -29790491 - L1_Mur3 LINE L1 -1967 4176 4065 3 1304 371 173 66 13 chr9 94285689 94285765 -29790407 - ORR1D2 LTR MaLR -7 363 284 3 1304 217 349 67 18 chr9 94285958 94286126 -29790046 + MIR SINE MIR 7 192 -76 3 1304 831 48 0 0 chr9 94286570 94286674 -29789498 + (CA)n Simple_repeat Simple_repeat 2 105 0 3 1304 38900 44 0 4 chr9 94287212 94293663 -29782509 - L1Md_T LINE L1 0 6585 66 3 1304 363 315 9 0 chr9 94294229 94294340 -29781832 - RSINE1 SINE B4 -44 121 10 3 1304 207 100 0 0 chr9 94296305 94296335 -29779837 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 3 1304 387 56 0 0 chr9 94296597 94296651 -29779521 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 3 1304 661 219 243 0 chr9 94296658 94296827 -29779345 - B3 SINE B2 -5 211 2 3 1304 5003 100 58 3 chr9 94296840 94297541 -29778631 - Lx3_Mus LINE L1 -8 7001 6262 3 1304 8737 87 22 12 chr9 94297541 94298576 -29777596 + L1_Mur1 LINE L1 3594 4641 -1245 3 1304 261 0 0 0 chr9 94298576 94298605 -29777567 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1304 8737 87 22 12 chr9 94298605 94298821 -29777351 + L1_Mur1 LINE L1 4642 4857 -1029 3 1304 203 170 21 0 chr9 94298821 94298868 -29777304 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1304 216 317 17 0 chr9 94299420 94299480 -29776692 + B4A SINE B4 85 145 -147 3 1304 467 255 19 19 chr9 94299429 94299537 -29776635 + PB1D10 SINE Alu 9 116 -1 3 1304 234 344 39 54 chr9 94299548 94299806 -29776366 + L1ME2z LINE L1 6190 6443 -1 3 1304 404 302 55 30 chr9 94300040 94300204 -29775968 - MLT1K LTR MaLR -24 571 404 3 1304 2290 75 0 0 chr9 94301445 94301726 -29774446 + L1_Mus2 LINE L1 6286 6566 0 3 1304 299 280 145 47 chr9 94301809 94301981 -29774191 + MER3 DNA MER1_type 21 209 0 3 1304 273 328 0 0 chr9 94302888 94302952 -29773220 + B4A SINE B4 83 146 -146 3 1304 766 173 45 0 chr9 94303223 94303356 -29772816 - B1_Mus1 SINE Alu -7 141 3 3 1304 695 208 0 0 chr9 94303691 94303821 -29772351 + B1F SINE Alu 5 134 -15 3 1304 432 158 45 27 chr9 94303890 94304001 -29772171 + Lx6 LINE L1 7348 7460 0 3 1304 566 230 8 21 chr9 94304004 94304245 -29771927 + GA-rich Low_complexity Low_complexity 1 237 0 3 1304 238 260 40 30 chr9 94304732 94304831 -29771341 + MER67C LTR ERV1 77 176 -535 3 1304 825 65 0 0 chr9 94305248 94305356 -29770816 + (GGAGA)n Simple_repeat Simple_repeat 3 110 0 3 1304 1262 268 44 24 chr9 94305981 94306466 -29769706 + L1MC3 LINE L1 7142 7671 -114 3 1304 261 232 0 0 chr9 94306491 94306547 -29769625 + L1MC3 LINE L1 6264 6319 -14 3 1304 275 284 213 15 chr9 94306584 94306720 -29769452 + L1MC3 LINE L1 6700 6862 -923 3 1304 182 174 0 21 chr9 94306723 94306770 -29769402 + A-rich Low_complexity Low_complexity 4 49 0 3 1304 219 69 0 0 chr9 94306796 94306825 -29769347 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1304 298 360 36 7 chr9 94307020 94307157 -29769015 - MIRb SINE MIR -123 145 5 3 1304 439 244 88 42 chr9 94307222 94307473 -29768699 - RMER4B LTR ERVK -6 579 281 3 1304 222 37 0 0 chr9 94307476 94307503 -29768669 + (TCC)n Simple_repeat Simple_repeat 2 28 0 3 1304 231 167 0 0 chr9 94308516 94308558 -29767614 + CT-rich Low_complexity Low_complexity 3 44 0 3 1304 671 187 173 24 chr9 94308567 94308775 -29767397 - RMER4B LTR ERVK -330 255 17 3 1304 217 283 0 0 chr9 94309331 94309377 -29766795 + polypurine Low_complexity Low_complexity 3 48 0 3 1304 302 176 27 0 chr9 94309387 94309461 -29766711 + (CATA)n Simple_repeat Simple_repeat 2 77 0 3 1304 576 0 0 0 chr9 94310851 94310915 -29765257 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 3 1304 286 315 78 8 chr9 94311527 94311655 -29764517 + MER5A DNA MER1_type 1 137 -52 3 1304 653 292 91 33 chr9 94312624 94312900 -29763272 + B4 SINE B4 1 292 0 3 1304 264 218 105 35 chr9 94313359 94313473 -29762699 - Lx8 LINE L1 -2 7471 7350 3 1304 262 102 61 0 chr9 94314003 94314052 -29762120 + MLT1A1 LTR MaLR 1 52 -356 3 1304 475 244 59 25 chr9 94314121 94314310 -29761862 + MLT1A1 LTR MaLR 153 400 -8 3 1304 791 154 8 0 chr9 94314392 94314515 -29761657 + B1_Mus1 SINE Alu 25 148 0 4 1304 236 298 89 82 chr9 94314394 94314529 -29761643 + B4A SINE B4 111 246 -46 4 1304 567 254 159 60 chr9 94314640 94314815 -29761357 - L1MA5 LINE L1 -130 6170 5985 4 1304 1268 193 14 0 chr9 94314815 94315038 -29761134 + URR1A DNA MER1_type 1 226 0 4 1304 567 254 147 62 chr9 94315038 94315214 -29760958 - L1MA5 LINE L1 -316 5984 5784 4 1304 229 352 67 11 chr9 94315301 94315390 -29760782 + LTR16B1 LTR ERVL 31 124 -356 4 1304 337 300 56 0 chr9 94316199 94316263 -29759909 + B4A SINE B4 198 261 -31 4 1304 378 0 0 0 chr9 94316263 94316305 -29759867 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1304 337 300 56 0 chr9 94316305 94316330 -29759842 + B4A SINE B4 262 291 -1 4 1304 456 319 123 0 chr9 94316565 94316703 -29759469 + RSINE1 SINE B4 3 157 -8 4 1304 818 190 42 0 chr9 94317905 94318047 -29758125 + B1_Mus1 SINE Alu 1 148 0 4 1304 2053 216 23 5 chr9 94318173 94318564 -29757608 - MTD LTR MaLR -21 398 1 4 1304 1188 111 0 0 chr9 94318834 94319091 -29757081 + (TG)n Simple_repeat Simple_repeat 1 257 0 4 1304 273 322 44 61 chr9 94319162 94319390 -29756782 - Charlie7a DNA MER1_type -26 246 23 4 1304 407 333 0 0 chr9 94319950 94320067 -29756105 + PB1D10 SINE Alu 1 117 0 4 1304 239 0 32 0 chr9 94320069 94320100 -29756072 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4 1304 318 282 0 86 chr9 94320110 94320203 -29755969 + PB1D10 SINE Alu 15 99 -18 4 1304 1165 259 57 67 chr9 94321377 94321749 -29754423 - MTD LTR MaLR -39 380 13 4 1304 2308 289 65 27 chr9 94321764 94322579 -29753593 - MTD-int LTR MaLR -4 1254 409 4 1304 353 213 0 0 chr9 94322703 94322764 -29753408 + ID_B1 SINE B4 157 217 -7 4 1304 238 173 56 37 chr9 94322716 94322770 -29753402 + PB1 SINE Alu 72 126 -1 4 1304 584 284 112 56 chr9 94322783 94323052 -29753120 + B4A SINE B4 1 284 -8 4 1304 410 0 0 20 chr9 94323072 94323123 -29753049 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1304 225 196 0 0 chr9 94323266 94323317 -29752855 + GA-rich Low_complexity Low_complexity 5 55 0 4 1304 692 315 80 38 chr9 94323318 94323733 -29752439 - MLT2B4 LTR ERVL -73 447 14 4 1304 1327 211 154 6 chr9 94323812 94324136 -29752036 - ORR1D1 LTR MaLR 0 374 3 4 1304 686 252 0 54 chr9 94324561 94324708 -29751464 + RSINE1 SINE B4 3 141 -24 4 1304 387 0 0 0 chr9 94324708 94324751 -29751421 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1304 184 333 104 86 chr9 94325493 94325713 -29750459 - MIRm SINE MIR -48 228 5 4 1304 606 113 0 0 chr9 94325900 94326015 -29750157 + (TC)n Simple_repeat Simple_repeat 2 116 0 4 1304 198 0 0 0 chr9 94326015 94326037 -29750135 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1304 306 0 0 0 chr9 94327860 94327894 -29748278 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 1304 423 38 0 0 chr9 94327894 94327946 -29748226 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1304 495 0 0 0 chr9 94328569 94328624 -29747548 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 4 1304 396 0 0 0 chr9 94329036 94329080 -29747092 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1304 200 244 0 0 chr9 94329084 94329125 -29747047 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1304 457 315 21 53 chr9 94330096 94330458 -29745714 - MLT1C LTR MaLR -1 466 64 4 1304 450 0 0 0 chr9 94331068 94331118 -29745054 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1304 846 280 21 5 chr9 94332164 94332358 -29743814 + B3A SINE B2 2 198 0 4 1304 686 320 61 19 chr9 94332389 94332650 -29743522 + B4A SINE B4 3 274 -18 4 1304 238 350 0 0 chr9 94332676 94332756 -29743416 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1304 502 54 27 0 chr9 94332757 94332831 -29743341 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1304 517 266 47 26 chr9 94333322 94333551 -29742621 + L1MB1 LINE L1 5271 5501 -679 4 1304 339 308 37 41 chr9 94333577 94333780 -29742392 + MTD LTR MaLR 11 201 -220 4 1304 629 307 56 5 chr9 94333809 94334022 -29742150 + MTD LTR MaLR 196 419 0 4 1304 207 0 0 0 chr9 94334055 94334078 -29742094 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1304 236 257 13 13 chr9 94334087 94334162 -29742010 + Lx8 LINE L1 7394 7468 -5 4 1304 590 265 46 28 chr9 94334190 94334407 -29741765 + L1MB1 LINE L1 5596 5816 -364 4 1304 301 265 94 0 chr9 94334412 94334529 -29741643 + L1MB1 LINE L1 5938 6065 -124 4 1304 1489 235 58 6 chr9 94334533 94334745 -29741427 + ORR1D2 LTR MaLR 3 224 -146 4 1304 2109 236 26 133 chr9 94334745 94335429 -29740743 - RMER19C LTR ERVK 0 611 1 4 1304 1489 235 58 6 chr9 94335429 94335558 -29740614 + ORR1D2 LTR MaLR 225 361 -9 4 1304 253 299 15 0 chr9 94335720 94335787 -29740385 + tRNA-Ala-GCY_ tRNA tRNA 2 69 -6 4 1304 374 348 25 19 chr9 94335810 94335968 -29740204 + MER5B DNA MER1_type 13 171 -7 4 1304 336 275 61 24 chr9 94336708 94336872 -29739300 + L1M5 LINE L1 5519 5688 -491 4 1304 1270 278 32 35 chr9 94336883 94337230 -29738942 - ORR1D2 LTR MaLR -5 365 20 4 1304 345 100 0 0 chr9 94338466 94338516 -29737656 + (TAA)n Simple_repeat Simple_repeat 2 51 0 4 1304 592 302 85 106 chr9 94338767 94339049 -29737123 + B4A SINE B4 9 284 -8 4 1304 306 209 28 56 chr9 94339228 94339299 -29736873 - PB1D10 SINE Alu -20 97 29 4 1304 252 0 0 0 chr9 94339331 94339359 -29736813 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1304 1031 304 107 39 chr9 94339374 94339983 -29736189 + L1MB7 LINE L1 5406 6055 -129 4 1304 539 53 0 13 chr9 94340724 94340800 -29735372 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1304 214 95 0 45 chr9 94340803 94340847 -29735325 + (TAA)n Simple_repeat Simple_repeat 2 43 0 4 1304 1128 244 58 7 chr9 94341152 94341294 -29734878 - MTEa LTR MaLR -24 355 208 4 1304 582 63 0 0 chr9 94341294 94341373 -29734799 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1304 1128 244 58 7 chr9 94341373 94341523 -29734649 - MTEa LTR MaLR -172 207 49 4 1304 228 292 54 27 chr9 94341512 94341586 -29734586 - RLTR9B2 LTR ERVK -181 239 164 4 1304 254 306 63 24 chr9 94341570 94341697 -29734475 + LTR16B2 LTR ERVL 238 369 -93 4 1304 252 0 0 0 chr9 94341717 94341745 -29734427 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1304 714 296 117 18 chr9 94343544 94343885 -29732287 + MTEb LTR MaLR 1 375 -4 4 1304 247 258 16 31 chr9 94344139 94344203 -29731969 - ID4_ SINE ID 0 83 21 4 1304 410 318 9 0 chr9 94344621 94344728 -29731444 + PB1 SINE Alu 10 117 -10 4 1304 498 319 57 96 chr9 94344770 94345248 -29730924 - MER31B LTR ERV1 -1 465 7 4 1304 683 220 121 29 chr9 94345617 94345823 -29730349 + MER92C LTR ERV1 250 474 -80 4 1304 347 273 26 0 chr9 94347724 94347801 -29728371 - ID4_ SINE ID -2 81 3 4 1304 379 282 8 60 chr9 94347876 94347993 -29728179 - PB1D9 SINE Alu -9 111 1 4 1304 450 0 0 0 chr9 94348005 94348055 -29728117 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1304 3506 137 4 0 chr9 94348891 94349424 -29726748 + Lx3C LINE L1 6201 6735 -241 4 1304 352 180 88 39 chr9 94349425 94349555 -29726617 + Lx3C LINE L1 6856 7000 0 4 1304 495 0 0 0 chr9 94349555 94349610 -29726562 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 4 1304 845 188 12 0 chr9 94349610 94349948 -29726224 + GA-rich Low_complexity Low_complexity 1 341 0 4 1304 1095 109 0 0 chr9 94349949 94350114 -29726058 + (GAAA)n Simple_repeat Simple_repeat 1 165 0 4 1304 21 36 0 0 chr9 94350318 94350346 -29725826 + AT_rich Low_complexity Low_complexity 1 28 0 4 1304 274 249 25 179 chr9 94350456 94350657 -29725515 + MTEa LTR MaLR 202 371 -8 4 1304 422 255 9 64 chr9 94350724 94350833 -29725339 - PB1D10 SINE Alu -2 115 13 4 1304 2412 197 65 85 chr9 94352012 94352623 -29723549 - RLTR18 LTR ERVK -3 613 15 4 1304 578 228 9 0 chr9 94352755 94352869 -29723303 + B3 SINE B2 3 117 -99 4 1304 216 372 12 49 chr9 94353836 94353918 -29722254 + ID4_ SINE ID 2 80 -3 4 1304 2065 217 9 21 chr9 94354246 94354670 -29721502 + MTD LTR MaLR 1 419 0 4 1304 280 356 0 0 chr9 94354884 94354974 -29721198 + PB1D10 SINE Alu 25 114 -3 4 1304 719 227 208 34 chr9 94355184 94355492 -29720680 + ORR1D2 LTR MaLR 1 362 -8 4 1304 261 0 0 0 chr9 94355694 94355723 -29720449 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1304 805 319 21 17 chr9 94357237 94357524 -29718648 - MER2 DNA MER2_type -47 298 11 4 1304 559 371 19 0 chr9 94358764 94358969 -29717203 - MER58A DNA MER1_type -15 209 1 4 1304 5747 53 0 7 chr9 94359166 94359844 -29716328 + L1Md_F2 LINE L1 5896 6568 -14 4 1304 569 295 113 44 chr9 94359997 94360316 -29715856 - LTR37B LTR ERV1 0 468 128 4 1304 865 320 123 37 chr9 94360866 94361459 -29714713 + L1MC3 LINE L1 7133 7776 -9 4 1304 525 323 75 20 chr9 94361596 94361902 -29714270 - Tigger10 DNA Tigger -478 1365 1043 4 1304 328 262 119 60 chr9 94362021 94362155 -29714017 + LTR82B Low_complexity ERVL 2 143 -687 4 1304 268 317 77 46 chr9 94362095 94362290 -29713882 + LTR82B Low_complexity ERVL 135 335 -495 4 1304 252 377 19 76 chr9 94362409 94362470 -29713702 + ID_B1 SINE B4 47 195 -29 4 1304 276 350 31 0 chr9 94362470 94362567 -29713605 + B1F2 SINE Alu 18 117 -32 4 1304 267 103 0 0 chr9 94362584 94362623 -29713549 + (CAAAG)n Simple_repeat Simple_repeat 1 39 0 4 1304 1987 113 18 58 chr9 94362989 94363319 -29712853 + ORR1A2 LTR MaLR 3 319 -8 4 1304 456 199 6 32 chr9 94363603 94363759 -29712413 + G-rich Low_complexity Low_complexity 5 156 0 4 1304 477 104 0 0 chr9 94364392 94364469 -29711703 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 4 1304 649 151 172 16 chr9 94365525 94365653 -29710519 - B1_Mur4 SINE Alu -2 148 1 4 1304 815 267 15 15 chr9 94367028 94367233 -29708939 + B3 SINE B2 5 209 -7 4 1304 579 262 28 7 chr9 94367514 94367656 -29708516 - B1F SINE Alu -2 147 3 4 1304 350 316 36 7 chr9 94367691 94367831 -29708341 - L1MA5 LINE L1 -30 6270 6127 5 1304 189 0 0 0 chr9 94368332 94368353 -29707819 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 5 1304 456 266 110 0 chr9 94368703 94368812 -29707360 + ID_B1 SINE B4 84 204 -20 5 1304 265 240 0 0 chr9 94369267 94369317 -29706855 - PB1 SINE Alu -2 125 76 5 1304 259 197 12 95 chr9 94369317 94369345 -29706827 - ID_B1 SINE B4 0 212 148 5 1304 181 317 70 70 chr9 94369424 94369580 -29706592 - L2 LINE L2 -970 2449 2294 5 1304 208 0 62 0 chr9 94370583 94370615 -29705557 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 5 1304 215 284 93 13 chr9 94370621 94370696 -29705476 - PB1D7 SINE Alu -19 101 21 5 1304 21 0 0 0 chr9 94370719 94370740 -29705432 + AT_rich Low_complexity Low_complexity 1 21 0 5 1304 493 232 45 0 chr9 94371655 94371767 -29704405 - ORR1C2 LTR MaLR -6 378 262 5 1305 23 0 0 0 chr9 94372453 94372476 -29703696 + AT_rich Low_complexity Low_complexity 1 23 0 5 1305 300 331 78 24 chr9 94372579 94372746 -29703426 - MIR SINE MIR -21 241 66 5 1305 1259 68 0 0 chr9 94372785 94372932 -29703240 - B1_Mus1 SINE Alu -1 147 1 5 1305 272 208 0 27 chr9 94374202 94374276 -29701896 + T-rich Low_complexity Low_complexity 2 73 0 5 1305 510 302 13 26 chr9 94376088 94376241 -29699931 + RSINE1 SINE B4 5 155 -10 5 1305 396 0 0 0 chr9 94376243 94376287 -29699885 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1305 22 0 0 0 chr9 94376343 94376365 -29699807 + AT_rich Low_complexity Low_complexity 1 22 0 5 1305 369 0 0 0 chr9 94376433 94376474 -29699698 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1305 27 49 0 0 chr9 94377055 94377096 -29699076 + AT_rich Low_complexity Low_complexity 1 41 0 5 1305 2184 106 22 111 chr9 94378056 94378417 -29697755 + ORR1A4 LTR MaLR 1 329 0 5 1305 1790 201 62 9 chr9 94378429 94378800 -29697372 + MTD LTR MaLR 24 405 -14 5 1305 239 250 88 0 chr9 94378956 94379024 -29697148 - MamRep137 DNA TcMar? -360 84 11 5 1305 333 225 3 82 chr9 94379445 94379534 -29696638 - ID4_ SINE ID -53 99 12 5 1305 226 330 32 11 chr9 94379550 94379645 -29696527 - PB1 SINE Alu -29 98 2 5 1305 252 0 0 0 chr9 94382129 94382157 -29694015 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1305 639 134 0 0 chr9 94383559 94383678 -29692494 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 1305 286 235 29 0 chr9 94384072 94384140 -29692032 + ID4 SINE ID 1 70 -13 5 1305 302 306 86 49 chr9 94384271 94384515 -29691657 + L1MC4 LINE L1 7718 7970 -72 5 1305 28 29 0 0 chr9 94384596 94384631 -29691541 + AT_rich Low_complexity Low_complexity 1 35 0 5 1305 693 238 120 22 chr9 94384667 94384907 -29691265 - ID_B1 SINE B4 -10 282 9 5 1305 285 28 0 0 chr9 94385132 94385163 -29691009 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1305 357 82 0 0 chr9 94385163 94385212 -29690960 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1305 402 21 0 0 chr9 94385216 94385263 -29690909 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1305 543 264 8 23 chr9 94386569 94386697 -29689475 + B4A SINE B4 3 128 -164 5 1305 407 43 57 0 chr9 94386887 94386957 -29689215 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1305 748 251 110 0 chr9 94387875 94388066 -29688106 + Lx8 LINE L1 6709 6920 -553 5 1305 343 83 0 0 chr9 94388119 94388167 -29688005 + Lx2 LINE L1 6596 6643 -354 5 1305 1561 117 0 9 chr9 94388167 94388392 -29687780 + Lx2 LINE L1 6775 6997 0 5 1305 247 336 25 57 chr9 94389052 94389210 -29686962 - MLT1L LTR MaLR -236 374 222 5 1305 290 254 82 55 chr9 94390269 94390415 -29685757 + RMER15 LTR ERVL 411 560 -15 5 1305 781 287 67 20 chr9 94390719 94391060 -29685112 - L1MC1 LINE L1 -77 6256 5900 5 1305 334 238 97 19 chr9 94391070 94391173 -29684999 - PB1D10 SINE Alu -2 115 5 5 1305 362 261 27 0 chr9 94391244 94391355 -29684817 - L1MC1 LINE L1 -572 5772 5659 5 1305 29 0 0 0 chr9 94394777 94394806 -29681366 + AT_rich Low_complexity Low_complexity 1 29 0 5 1305 3326 60 2 17 chr9 94396024 94396430 -29679742 - MTB LTR MaLR 0 400 1 5 1305 202 220 0 0 chr9 94396900 94396950 -29679222 + T-rich Low_complexity Low_complexity 1 50 0 5 1305 436 288 44 40 chr9 94396966 94397194 -29678978 + B4A SINE B4 3 231 -61 5 1305 340 314 46 28 chr9 94397548 94397656 -29678516 + B4A SINE B4 182 291 -1 5 1305 450 0 0 0 chr9 94397677 94397727 -29678445 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1305 29 0 0 0 chr9 94398207 94398236 -29677936 + AT_rich Low_complexity Low_complexity 1 29 0 5 1305 261 0 0 0 chr9 94399349 94399378 -29676794 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1305 33291 33 0 0 chr9 94399728 94403747 -29672425 - L1Md_T LINE L1 -626 5956 1938 5 1305 5603 20 0 0 chr9 94403747 94404349 -29671823 + L1Md_T LINE L1 5981 6582 0 5 1305 794 265 171 22 chr9 94404465 94404630 -29671542 - MTD LTR MaLR -55 364 191 5 1305 320 0 25 0 chr9 94404630 94404670 -29671502 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1305 794 265 171 22 chr9 94404670 94404820 -29671352 - MTD LTR MaLR -229 190 3 5 1305 21 0 0 0 chr9 94405498 94405519 -29670653 + AT_rich Low_complexity Low_complexity 1 21 0 5 1305 228 86 0 0 chr9 94405845 94405880 -29670292 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1305 534 312 0 0 chr9 94405929 94406054 -29670118 - RSINE1 SINE B4 -38 127 3 5 1305 2502 70 0 60 chr9 94406535 94406869 -29669303 - L1_Mus2 LINE L1 -1 6565 6252 5 1305 1687 16 0 0 chr9 94406869 94407056 -29669116 + L1_Mus2 LINE L1 6057 6243 -323 5 1305 333 47 0 0 chr9 94407095 94407138 -29669034 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1305 616 35 23 0 chr9 94407224 94407311 -29668861 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 5 1305 257 109 22 0 chr9 94407435 94407481 -29668691 + (GGA)n Simple_repeat Simple_repeat 3 49 0 5 1305 920 288 78 21 chr9 94408143 94408714 -29667458 + L1MB4 LINE L1 5574 6183 0 5 1305 293 365 66 30 chr9 94408770 94408968 -29667204 + Kanga1a DNA Tc2 52 256 -498 5 1305 472 231 28 9 chr9 94408936 94409045 -29667127 + B1_Mur2 SINE Alu 38 148 -1 5 1305 240 248 75 127 chr9 94409047 94409181 -29666991 + Kanga1a DNA Tc2 205 331 -423 5 1305 3163 164 28 19 chr9 94409187 94409760 -29666412 - RMER4B LTR ERVK 0 585 8 5 1305 233 371 83 37 chr9 94410291 94410509 -29665663 + LTR79 LTR ERVL 146 373 -154 5 1305 975 210 55 16 chr9 94411101 94411357 -29664815 + RMER1C Other Other 1059 1324 -18 5 1305 3210 165 34 42 chr9 94411619 94412232 -29663940 + Lx5 LINE L1 6421 7028 -22 5 1305 198 0 0 0 chr9 94412238 94412260 -29663912 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 5 1305 354 243 46 32 chr9 94412302 94412408 -29663764 - PB1D10 SINE Alu -6 111 6 5 1305 259 312 95 27 chr9 94412949 94413097 -29663075 - MIRc SINE MIR -23 245 88 5 1305 3521 26 29 0 chr9 94413150 94413535 -29662637 - MTA_Mm LTR MaLR 0 396 1 5 1305 9393 38 18 1 chr9 94413535 94414615 -29661557 - MTA_Mm-int LTR MaLR 0 1098 1 5 1305 3742 13 2 2 chr9 94414615 94415011 -29661161 - MTA_Mm LTR MaLR 0 396 1 5 1305 926 240 35 70 chr9 94415151 94415438 -29660734 - B4 SINE B4 -14 278 2 5 1305 654 260 92 16 chr9 94415875 94416059 -29660113 + B3A SINE B2 1 198 0 5 1305 1078 82 7 0 chr9 94417640 94417775 -29658397 + B1_Mus1 SINE Alu 2 137 -11 5 1305 25 0 0 0 chr9 94418214 94418239 -29657933 + AT_rich Low_complexity Low_complexity 1 25 0 5 1305 190 282 54 76 chr9 94418616 94418708 -29657464 - L3b LINE CR1 -120 362 273 5 1305 1357 67 62 0 chr9 94421420 94421599 -29654573 + B2_Mm1t SINE B2 1 190 -3 5 1305 310 287 256 0 chr9 94421869 94421998 -29654174 + RSINE1 SINE B4 4 165 0 5 1305 405 0 0 0 chr9 94422474 94422519 -29653653 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1305 428 282 43 0 chr9 94423002 94423119 -29653053 - B1F SINE Alu -13 136 15 5 1305 297 109 0 0 chr9 94423549 94423595 -29652577 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1305 2635 253 92 21 chr9 94423595 94424417 -29651755 - RCHARR1 DNA MER1_type -93 881 1 5 1305 229 290 32 0 chr9 94424562 94424624 -29651548 - RCHARR1 DNA MER1_type -653 321 258 5 1305 260 273 91 0 chr9 94425950 94426016 -29650156 - ID4 SINE ID -11 72 1 5 1305 21 36 0 0 chr9 94429371 94429399 -29646773 + AT_rich Low_complexity Low_complexity 1 28 0 5 1305 213 39 0 0 chr9 94430215 94430241 -29645931 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1305 627 14 0 0 chr9 94430241 94430312 -29645860 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 1305 342 123 0 0 chr9 94431348 94431405 -29644767 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1305 4413 91 3 31 chr9 94431435 94432046 -29644126 + L1_Mus3 LINE L1 6038 6631 -7 5 1305 318 67 0 0 chr9 94432469 94432514 -29643658 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1305 23 0 0 0 chr9 94432696 94432719 -29643453 + AT_rich Low_complexity Low_complexity 1 23 0 5 1305 333 254 15 0 chr9 94432730 94432797 -29643375 + ID_B1 SINE B4 84 151 -73 5 1305 252 325 47 24 chr9 94432797 94432814 -29643358 + PB1D9 SINE Alu 3 88 -32 5 1305 21 0 0 0 chr9 94433032 94433053 -29643119 + AT_rich Low_complexity Low_complexity 1 21 0 5 1305 279 0 0 0 chr9 94433274 94433305 -29642867 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1305 214 254 55 0 chr9 94433476 94433531 -29642641 + PB1D10 SINE Alu 2 59 -58 5 1305 294 129 0 0 chr9 94433546 94433608 -29642564 + (A)n Simple_repeat Simple_repeat 1 62 0 5 1305 180 0 0 0 chr9 94435758 94435778 -29640394 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1305 49 60 0 0 chr9 94438294 94438378 -29637794 + GC_rich Low_complexity Low_complexity 1 84 0 5 1305 33 80 0 0 chr9 94438719 94438794 -29637378 + GC_rich Low_complexity Low_complexity 1 75 0 5 1305 211 234 15 15 chr9 94439015 94439080 -29637092 + (CTGGGG)n Simple_repeat Simple_repeat 6 70 0 5 1305 361 311 51 32 chr9 94440731 94440745 -29635427 - RSINE1 SINE B4 -4 161 148 5 1305 180 0 0 0 chr9 94440745 94440765 -29635407 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1305 361 311 51 32 chr9 94440765 94440906 -29635266 - RSINE1 SINE B4 -18 147 4 5 1305 414 57 0 0 chr9 94440956 94441009 -29635163 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1305 393 256 73 58 chr9 94441012 94441135 -29635037 - B3 SINE B2 -38 178 54 6 1305 4457 168 120 72 chr9 94441135 94441177 -29634995 - RLTR25A LTR ERVK 0 1103 1062 6 1305 198 0 0 0 chr9 94441177 94441199 -29634973 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 6 1305 4457 168 120 72 chr9 94441199 94441340 -29634832 - RLTR25A LTR ERVK -42 1061 901 6 1305 384 77 0 0 chr9 94441340 94441392 -29634780 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1305 4457 168 120 72 chr9 94441392 94442254 -29633918 - RLTR25A LTR ERVK -203 900 7 6 1305 1378 97 11 5 chr9 94442920 94443106 -29633066 - B2_Mm2 SINE B2 -8 187 1 6 1305 1842 205 101 18 chr9 94443227 94443664 -29632508 + Lx9 LINE L1 7172 7644 0 6 1305 467 296 89 55 chr9 94443719 94444074 -29632098 - MLT1A0 LTR MaLR -5 385 3 6 1305 263 304 117 15 chr9 94445592 94445866 -29630306 + L1M5 LINE L1 4509 4810 -1336 6 1305 309 191 110 22 chr9 94446497 94446588 -29629584 + L1MC4 LINE L1 1561 1659 -4556 6 1305 198 0 0 0 chr9 94446704 94446726 -29629446 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1305 416 180 46 82 chr9 94446728 94446922 -29629250 - RMER17C LTR ERVK -133 277 91 6 1305 646 289 33 0 chr9 94447072 94447242 -29628930 + B3A SINE B2 1 176 -40 6 1305 461 295 110 66 chr9 94448692 94448964 -29627208 - MLT1C LTR MaLR -12 455 172 6 1305 448 340 55 78 chr9 94449037 94449346 -29626826 + MLT1A0 LTR MaLR 57 358 -7 6 1305 1887 136 104 0 chr9 94449616 94449932 -29626240 - ORR1B2 LTR MaLR -18 349 1 6 1305 1546 211 79 48 chr9 94450149 94450542 -29625630 + MTD LTR MaLR 1 405 -14 6 1305 3316 221 170 57 chr9 94450555 94451675 -29624497 + MTD-int LTR MaLR 1 1246 -12 6 1305 1715 228 36 36 chr9 94451688 94452103 -29624069 + MTD LTR MaLR 5 419 0 6 1305 511 232 211 5 chr9 94452209 94452417 -29623755 + Lx8 LINE L1 6275 6525 -948 6 1305 238 326 86 81 chr9 94452670 94452808 -29623364 - MIRb SINE MIR -40 228 80 6 1305 266 215 15 15 chr9 94452883 94452949 -29623223 - RMER15 LTR ERVL -104 471 406 6 1305 236 282 35 43 chr9 94452952 94453067 -29623105 - Lx8 LINE L1 -207 7266 7153 6 1305 351 0 0 0 chr9 94453449 94453488 -29622684 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 1305 197 330 53 0 chr9 94453519 94453613 -29622559 + L2 LINE L2 2347 2445 -974 6 1305 279 106 42 21 chr9 94454599 94454647 -29621525 - MER5B DNA MER1_type -2 176 128 6 1305 577 220 43 16 chr9 94455008 94455193 -29620979 + MER53 DNA hAT 4 193 0 6 1305 1089 147 126 0 chr9 94455486 94455684 -29620488 + URR1A DNA MER1_type 1 223 -3 6 1305 1481 301 46 44 chr9 94455697 94456408 -29619764 + Lx8 LINE L1 6761 7473 0 6 1305 950 262 158 29 chr9 94456675 94457024 -29619148 + MTD LTR MaLR 9 402 -17 6 1305 3864 312 54 22 chr9 94458169 94459766 -29616406 - RMER15-int LTR ERVL -3311 1688 41 6 1305 749 310 35 25 chr9 94459792 94460076 -29616096 - RMER15 LTR ERVL 0 575 289 6 1305 411 289 54 15 chr9 94461368 94461498 -29614674 + MER63B DNA AcHobo 300 434 -2 6 1305 501 17 0 0 chr9 94462341 94462399 -29613773 + (CTTG)n Simple_repeat Simple_repeat 2 59 0 6 1305 437 244 274 24 chr9 94462401 94462569 -29613603 - ID_B1 SINE B4 -14 210 1 6 1305 21 36 0 0 chr9 94462691 94462719 -29613453 + AT_rich Low_complexity Low_complexity 1 28 0 6 1305 265 283 96 7 chr9 94462919 94463065 -29613107 - L1MA6 LINE L1 -20 6280 6122 6 1305 33 25 0 0 chr9 94463301 94463341 -29612831 + AT_rich Low_complexity Low_complexity 1 40 0 6 1305 1598 212 101 3 chr9 94465066 94465444 -29610728 - MTD LTR MaLR 0 419 5 6 1305 896 266 103 53 chr9 94465448 94465864 -29610308 - MTD-int LTR MaLR 0 1258 822 6 1305 340 250 45 0 chr9 94465861 94465949 -29610223 - MTD-int LTR MaLR -1166 92 1 6 1305 1434 218 44 92 chr9 94465950 94466385 -29609787 - MTD LTR MaLR -1 418 5 6 1305 366 366 85 42 chr9 94466426 94466736 -29609436 - MLT1J2 LTR MaLR -138 310 11 6 1305 1233 101 0 0 chr9 94466758 94466937 -29609235 + (TCC)n Simple_repeat Simple_repeat 2 180 0 6 1305 228 67 0 0 chr9 94467024 94467054 -29609118 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6 1305 198 0 0 0 chr9 94467184 94467206 -29608966 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 6 1305 27 0 0 0 chr9 94468735 94468762 -29607410 + AT_rich Low_complexity Low_complexity 1 27 0 6 1305 444 51 0 0 chr9 94470206 94470265 -29605907 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1305 278 274 38 88 chr9 94470439 94470599 -29605573 + Charlie7a DNA MER1_type 39 190 -82 6 1305 519 254 109 70 chr9 94470681 94471147 -29605025 - L1M3 LINE L1 -695 5596 5099 6 1305 430 270 159 44 chr9 94471169 94471351 -29604821 - B4A SINE B4 -55 237 35 6 1305 532 224 165 27 chr9 94471363 94471655 -29604517 - L1M3 LINE L1 -1003 5140 4812 6 1305 204 143 0 0 chr9 94471669 94471711 -29604461 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1305 356 138 17 0 chr9 94471714 94471772 -29604400 - HAL1-3A_ME LINE L1 -824 2034 1976 6 1305 382 201 12 38 chr9 94471773 94471933 -29604239 + (TATG)n Simple_repeat Simple_repeat 3 158 0 6 1305 396 0 0 0 chr9 94471945 94471989 -29604183 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1305 375 274 0 0 chr9 94471993 94472066 -29604106 - B4A SINE B4 -2 290 218 6 1305 640 154 29 51 chr9 94472071 94472208 -29603964 - Lx5 LINE L1 -3 7047 6914 6 1305 244 296 81 7 chr9 94472212 94472348 -29603824 + L1_Mur2 LINE L1 425 570 -6516 6 1305 1357 112 33 12 chr9 94472459 94472702 -29603470 + L1_Mur2 LINE L1 882 1129 -5957 6 1305 1350 210 84 9 chr9 94472694 94473016 -29603156 + Lx2B LINE L1 6654 6999 -1 6 1305 6170 137 24 12 chr9 94473017 94474225 -29601947 + L1_Mur2 LINE L1 1175 2393 -3484 6 1305 331 307 64 29 chr9 94474343 94474669 -29601503 - L1M3 LINE L1 -2265 3875 3541 6 1305 379 354 9 9 chr9 94474712 94474826 -29601346 - PB1D10 SINE Alu -1 116 3 6 1305 277 257 73 9 chr9 94474834 94474944 -29601228 - L1M3 LINE L1 -2641 3502 3386 6 1305 711 274 143 27 chr9 94475029 94475288 -29600884 - B4A SINE B4 -1 291 3 6 1305 361 293 58 58 chr9 94475492 94475753 -29600419 - L1M3 LINE L1 -2661 3482 3222 6 1305 402 308 90 0 chr9 94476002 94476135 -29600037 - RSINE1 SINE B4 -12 153 9 6 1305 190 257 53 26 chr9 94476548 94476624 -29599548 + L2a LINE L2 3344 3421 -5 6 1305 231 300 186 0 chr9 94476921 94476991 -29599181 + PB1D10 SINE Alu 9 91 -26 6 1305 224 224 102 0 chr9 94476958 94477007 -29599165 + B1F1 SINE Alu 62 115 -34 6 1305 512 375 6 2 chr9 94477341 94477544 -29598628 - B3A SINE B2 -3 213 11 6 1305 291 114 0 0 chr9 94477555 94477599 -29598573 + (TTA)n Simple_repeat Simple_repeat 3 46 0 6 1305 252 0 0 0 chr9 94477800 94477828 -29598344 + (ACTG)n Simple_repeat Simple_repeat 4 31 0 6 1305 23 0 0 0 chr9 94478033 94478056 -29598116 + AT_rich Low_complexity Low_complexity 1 23 0 6 1305 314 275 71 27 chr9 94478320 94478432 -29597740 - B1F SINE Alu -22 127 11 6 1305 194 264 76 64 chr9 94479541 94479649 -29596523 + MIRc SINE MIR 77 195 -73 6 1305 365 222 141 33 chr9 94479692 94479813 -29596359 - MER2 DNA MER2_type -57 288 155 6 1305 258 56 0 0 chr9 94479887 94479923 -29596249 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1305 665 183 74 30 chr9 94480135 94480270 -29595902 - B1_Mur2 SINE Alu -6 143 3 6 1305 324 0 0 0 chr9 94480556 94480592 -29595580 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1305 577 306 52 39 chr9 94480592 94480823 -29595349 + Kanga2_a DNA Tc2 114 347 -541 6 1305 292 211 0 34 chr9 94481613 94481672 -29594500 + B1_Mus2 SINE Alu 3 59 -88 6 1305 264 0 0 159 chr9 94481672 94481804 -29594368 + (CAGGG)n Simple_repeat Simple_repeat 4 114 0 6 1305 1162 86 74 6 chr9 94481846 94482022 -29594150 - B2_Mm2 SINE B2 -5 190 3 6 1305 248 325 42 34 chr9 94483084 94483202 -29592970 + L4 LINE RTE 1586 1704 -325 6 1305 432 0 0 0 chr9 94483349 94483397 -29592775 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1305 1127 55 0 14 chr9 94483402 94483550 -29592622 - B1_Mus2 SINE Alu -1 146 1 6 1305 823 317 22 0 chr9 94484768 94484998 -29591174 + B4A SINE B4 2 236 -56 6 1305 185 265 0 7 chr9 94485047 94485089 -29591083 + GA-rich Low_complexity Low_complexity 2 43 0 6 1305 435 87 0 0 chr9 94485089 94485158 -29591014 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1305 185 265 0 7 chr9 94485158 94485267 -29590905 + GA-rich Low_complexity Low_complexity 44 151 0 6 1305 228 213 0 0 chr9 94486374 94486435 -29589737 + CT-rich Low_complexity Low_complexity 2 62 0 6 1305 354 333 60 0 chr9 94487971 94487983 -29588189 + MIRb SINE MIR 63 74 -194 6 1305 644 305 119 14 chr9 94487983 94488336 -29587836 - MLT1B LTR MaLR 0 390 1 6 1305 354 333 60 0 chr9 94488336 94488440 -29587732 + MIRb SINE MIR 75 185 -83 6 1305 235 203 130 0 chr9 94489608 94489671 -29586501 - MER53 DNA hAT -5 188 117 6 1305 277 254 115 81 chr9 94489671 94489834 -29586338 - MTEb LTR MaLR -1 378 206 6 1305 216 111 36 18 chr9 94490021 94490076 -29586096 + (TTG)n Simple_repeat Simple_repeat 2 57 0 6 1305 319 358 117 17 chr9 94490238 94490477 -29585695 - LTR16C LTR ERVL -156 333 71 6 1305 2478 260 27 62 chr9 94490629 94491115 -29585057 + RCHARR1 DNA MER1_type 9 497 -477 6 1305 482 295 51 23 chr9 94491115 94491292 -29584880 + B3A SINE B2 1 182 -16 6 1305 2478 260 27 62 chr9 94491292 94491610 -29584562 + RCHARR1 DNA MER1_type 498 785 -189 6 1305 3052 167 132 4 chr9 94491747 94492445 -29583727 + RMER1B Other Other 228 1060 -6 6 1305 532 154 8 17 chr9 94493019 94493138 -29583034 + (CATA)n Simple_repeat Simple_repeat 4 121 0 6 1305 1322 311 29 52 chr9 94493166 94493895 -29582277 + L1MCa LINE L1 59 770 -5738 6 1305 293 209 75 21 chr9 94493992 94494085 -29582087 - L1MA6 LINE L1 -32 6268 6171 6 1305 326 308 37 66 chr9 94494131 94494374 -29581798 + L1MCa LINE L1 941 1176 -5332 6 1305 335 300 51 51 chr9 94494554 94494691 -29581481 + ID_B1 SINE B4 86 222 -2 6 1305 226 337 129 84 chr9 94494737 94495048 -29581124 - ORR1D2 LTR MaLR -2 368 44 6 1305 1332 266 37 3 chr9 94495159 94495510 -29580662 + ORR1D2 LTR MaLR 1 363 -7 6 1305 1254 262 120 47 chr9 94495630 94496669 -29579503 + L1MCa LINE L1 1614 2747 -3574 6 1305 689 276 7 0 chr9 94496669 94496814 -29579358 + RSINE1 SINE B4 3 148 -17 6 1305 1352 11 27 0 chr9 94496821 94497263 -29578909 + (TAGA)n Simple_repeat Simple_repeat 1 454 0 6 1305 1254 256 72 65 chr9 94497263 94497518 -29578654 + L1MCa LINE L1 2748 3005 -3316 6 1305 13340 22 0 0 chr9 94497697 94500000 -29576172 - L1Md_T LINE L1 0 6582 4280 6 1305 16662 34 1 1 chr9 94500001 94501989 -29574183 - L1_Mm LINE L1 -1605 4278 2291 1 163 2798 256 89 65 chr9 94502006 94502945 -29573227 + L1MC LINE L1 3022 4033 -2113 2 1306 207 0 0 0 chr9 94502945 94502968 -29573204 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 1306 2798 256 89 65 chr9 94502968 94503450 -29572722 + L1MC LINE L1 4034 4477 -1669 2 1306 293 143 0 0 chr9 94503453 94503502 -29572670 - ORR1D2 LTR MaLR 0 370 322 4 1306 3759 209 77 22 chr9 94504072 94504955 -29571217 + Lx7 LINE L1 6788 7680 -16 5 1306 387 281 116 8 chr9 94505264 94505393 -29570779 + B1F SINE Alu 6 148 -1 6 1306 213 196 0 0 chr9 94507611 94507657 -29568515 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1306 345 288 25 82 chr9 94507861 94508020 -29568152 - RLTR14 LTR ERV1 -8 374 225 8 1306 892 75 7 7 chr9 94508591 94508726 -29567446 - RLTR11A LTR ERVK 0 528 394 9 1306 987 176 20 63 chr9 94508726 94509083 -29567089 + RMER17C LTR ERVK 1 399 -11 1 1306 1936 164 9 3 chr9 94509082 94509419 -29566753 - RLTR11A LTR ERVK -137 391 53 1 1306 312 155 139 14 chr9 94509419 94509491 -29566681 - RLTR11A LTR ERVK -447 81 1 1 1306 358 327 62 25 chr9 94510412 94510572 -29565600 - MLT1B LTR MaLR -13 361 196 1 1306 370 266 95 25 chr9 94510728 94510886 -29565286 - MLT1B LTR MaLR -221 169 1 1 1306 262 107 18 18 chr9 94512006 94512063 -29564109 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1306 1170 211 8 20 chr9 94512328 94512580 -29563592 - Lx5 LINE L1 0 7050 6802 1 1306 3472 23 18 0 chr9 94512605 94512994 -29563178 - MTA_Mm LTR MaLR 0 396 1 1 1306 297 0 0 0 chr9 94513396 94513429 -29562743 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1306 1009 225 119 111 chr9 94513447 94513817 -29562355 + ORR1D1 LTR MaLR 2 374 0 1 1306 406 236 168 16 chr9 94513848 94513973 -29562199 + ID_B1 SINE B4 81 224 0 1 1306 183 100 0 0 chr9 94513973 94514003 -29562169 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1306 348 304 10 0 chr9 94514008 94514110 -29562062 + PB1D10 SINE Alu 3 105 -12 2 1306 255 61 0 0 chr9 94514110 94514143 -29562029 + (TAA)n Simple_repeat Simple_repeat 3 35 0 2 1306 417 20 0 0 chr9 94514647 94514697 -29561475 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1306 640 271 121 11 chr9 94515484 94515756 -29560416 - L1MA4 LINE L1 -7 6293 5992 2 1306 797 200 26 74 chr9 94516875 94517064 -29559108 + B3A SINE B2 3 182 -16 2 1306 228 256 0 0 chr9 94517064 94517150 -29559022 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1306 208 139 0 0 chr9 94517190 94517226 -29558946 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1306 863 9 69 0 chr9 94517247 94517363 -29558809 - B1_Mus2 SINE Alu -1 146 23 2 1306 343 194 0 0 chr9 94518779 94518841 -29557331 - ORR1E LTR MaLR 0 379 318 2 1306 1515 192 120 37 chr9 94518842 94519225 -29556947 - RMER15 LTR ERVL -22 553 139 2 1306 222 222 11 22 chr9 94519225 94519317 -29556855 + (TA)n Simple_repeat Simple_repeat 2 92 0 3 1306 426 216 59 0 chr9 94519322 94519424 -29556748 - RMER15 LTR ERVL -441 134 27 2 1306 406 254 430 14 chr9 94519564 94519773 -29556399 - ORR1E LTR MaLR -83 296 1 2 1306 1064 212 72 104 chr9 94520390 94520818 -29555354 - MT2A LTR ERVL -55 546 3 3 1306 243 0 0 0 chr9 94521177 94521204 -29554968 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1306 1083 70 575 0 chr9 94522235 94522442 -29553730 - ORR1A2 LTR MaLR 0 326 1 3 1306 242 230 0 26 chr9 94522442 94522505 -29553667 - MTD LTR MaLR -107 312 252 3 1306 335 265 62 102 chr9 94522670 94522820 -29553352 + B1F SINE Alu 3 148 -1 3 1306 246 32 0 0 chr9 94523154 94523185 -29552987 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1306 681 330 14 1 chr9 94524356 94524596 -29551576 + MLT1A0 LTR MaLR 133 373 -1 3 1306 519 328 21 5 chr9 94524625 94524812 -29551360 + MER20 DNA MER1_type 18 207 -12 3 1306 1184 179 9 22 chr9 94524961 94525189 -29550983 + URR1B DNA MER1_type 1 225 0 3 1306 1157 296 38 18 chr9 94525328 94525720 -29550452 - MER82 DNA MER2_type -182 471 72 4 1306 2918 140 54 40 chr9 94525733 94526285 -29549887 - Lx4A LINE L1 0 7058 6499 4 1306 1389 123 9 18 chr9 94526490 94526713 -29549459 - URR1A DNA MER1_type 0 226 6 4 1306 975 159 75 29 chr9 94526721 94526961 -29549211 - RMER15 LTR ERVL -312 263 13 4 1306 251 250 61 26 chr9 94527009 94527124 -29549048 + LTR37B LTR ERV1 340 458 -10 4 1306 213 39 0 0 chr9 94527650 94527676 -29548496 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 1306 297 0 0 0 chr9 94527676 94527708 -29548464 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1306 1171 81 0 0 chr9 94527751 94527899 -29548273 - B1_Mus1 SINE Alu 0 148 1 4 1306 507 33 0 0 chr9 94528065 94528126 -29548046 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 4 1306 252 0 0 0 chr9 94528476 94528504 -29547668 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1306 1530 225 53 46 chr9 94530150 94530564 -29545608 + MTD LTR MaLR 1 417 -2 5 1306 1298 245 68 9 chr9 94530592 94530930 -29545242 + ORR1D2 LTR MaLR 13 370 0 5 1306 306 329 21 42 chr9 94531003 94531146 -29545026 - MLT2F LTR ERVL -523 140 1 5 1306 404 319 45 40 chr9 94531164 94531340 -29544832 - MIR SINE MIR -47 215 39 5 1306 825 111 15 15 chr9 94532299 94532436 -29543736 + URR1B DNA MER1_type 89 225 0 5 1306 1954 137 54 64 chr9 94532544 94532951 -29543221 - RLTR23 LTR ERV1 -18 412 10 5 1306 2191 149 36 18 chr9 94533057 94533447 -29542725 + RMER10B LTR ERVL 1 397 -1 5 1306 223 229 197 14 chr9 94534623 94534694 -29541478 + B4A SINE B4 2 85 -207 5 1306 711 125 75 0 chr9 94534791 94534911 -29541261 + B2_Mm2 SINE B2 2 130 -65 5 1306 887 176 0 4 chr9 94534968 94535214 -29540958 + CT-rich Low_complexity Low_complexity 1 245 0 5 1306 3312 113 16 10 chr9 94535215 94535714 -29540458 - Lx3A LINE L1 0 6981 6480 6 1306 920 79 0 8 chr9 94535714 94535842 -29540330 + B2_Mm2 SINE B2 3 129 -66 6 1306 261 57 0 0 chr9 94535872 94535907 -29540265 + (TAA)n Simple_repeat Simple_repeat 3 37 0 6 1306 27 73 0 0 chr9 94536040 94536095 -29540077 + AT_rich Low_complexity Low_complexity 1 55 0 6 1306 373 288 94 23 chr9 94536156 94536284 -29539888 + ID_B1 SINE B4 88 224 0 6 1306 180 97 0 0 chr9 94536412 94536443 -29539729 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 6 1306 42157 4 0 0 chr9 94536462 94543038 -29533134 - L1Md_A LINE L1 0 6582 7 6 1306 1161 88 0 0 chr9 94543043 94543191 -29532981 - B1_Mus1 SINE Alu 0 148 1 6 1306 592 232 31 31 chr9 94543831 94543991 -29532181 - B3A SINE B2 -1 197 38 6 1306 420 298 24 16 chr9 94544015 94544141 -29532031 - ID_B1 SINE B4 -7 217 91 6 1306 415 213 21 0 chr9 94544428 94544522 -29531650 + U6 snRNA snRNA 1 96 -11 7 1306 505 254 21 42 chr9 94544530 94544674 -29531498 + ID_B1 SINE B4 84 224 0 7 1306 346 288 25 0 chr9 94545018 94545136 -29531036 + MLT1A LTR MaLR 3 123 -251 7 1306 243 146 0 0 chr9 94545997 94546052 -29530120 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1306 880 203 63 15 chr9 94546558 94546763 -29529409 + B3 SINE B2 1 215 -1 7 1306 600 124 0 0 chr9 94547242 94547347 -29528825 + (CA)n Simple_repeat Simple_repeat 1 105 0 7 1306 250 346 18 27 chr9 94547432 94547542 -29528630 + MLT1A LTR MaLR 487 595 0 7 1306 1297 119 119 0 chr9 94548560 94548762 -29527410 - URR1A DNA MER1_type 0 226 1 7 1306 1218 251 43 41 chr9 94549531 94549900 -29526272 + ORR1D2 LTR MaLR 1 370 0 7 1306 185 65 0 31 chr9 94549978 94550010 -29526162 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1306 260 327 17 69 chr9 94550072 94550246 -29525926 + MLT1J LTR MaLR 279 443 -69 7 1306 600 271 88 22 chr9 94550412 94550638 -29525534 - MER2 DNA MER2_type -103 242 2 8 1306 453 164 0 94 chr9 94552035 94552778 -29523394 + GA-rich Low_complexity Low_complexity 1 673 0 8 1306 522 0 0 0 chr9 94553400 94553458 -29522714 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1306 222 37 0 0 chr9 94553492 94553519 -29522653 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1306 276 200 0 0 chr9 94554185 94554245 -29521927 + GA-rich Low_complexity Low_complexity 3 62 0 8 1306 198 71 0 0 chr9 94554261 94554289 -29521883 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 8 1306 207 200 51 25 chr9 94554301 94554419 -29521753 + GA-rich Low_complexity Low_complexity 1 121 0 8 1306 494 304 126 26 chr9 94554557 94554884 -29521288 + MER57E1 LTR ERV1 13 372 0 8 1306 1679 193 6 149 chr9 94555423 94555898 -29520274 + MTC LTR MaLR 1 407 -14 8 1306 468 183 0 21 chr9 94555985 94556062 -29520110 - RMER21A LTR ERV1 -3 839 765 8 1306 4387 157 60 55 chr9 94556062 94556589 -29519583 - RMER21A LTR ERV1 0 947 424 8 1306 432 0 0 0 chr9 94556589 94556637 -29519535 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1306 4387 157 60 55 chr9 94556637 94557039 -29519133 - RMER21A LTR ERV1 -524 423 13 8 1306 452 349 0 7 chr9 94557435 94557585 -29518587 + RSINE1 SINE B4 3 151 -14 9 1306 468 51 0 0 chr9 94558451 94558510 -29517662 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1306 2039 138 39 6 chr9 94558653 94558987 -29517185 - ORR1A1 LTR MaLR -1 345 1 9 1306 1199 267 3 28 chr9 94559180 94559500 -29516672 - Lx7 LINE L1 -584 7112 6801 9 1306 270 255 93 19 chr9 94560461 94560569 -29515603 - PB1D10 SINE Alu -1 116 1 9 1306 628 234 85 28 chr9 94561465 94561606 -29514566 + B1F SINE Alu 1 149 0 9 1306 1401 76 0 21 chr9 94562857 94563046 -29513126 - B2_Mm2 SINE B2 -7 188 4 9 1306 760 219 23 27 chr9 94563162 94563676 -29512496 + RMER17C LTR ERVK 1 410 0 9 1306 231 182 0 0 chr9 94563676 94563720 -29512452 + B4A SINE B4 102 145 -147 9 1306 512 211 23 75 chr9 94563683 94563816 -29512356 + B1F SINE Alu 24 149 0 9 1306 244 363 54 72 chr9 94563830 94564216 -29511956 - RMER5 LTR ERV1 -30 504 126 1 1306 1203 70 6 11 chr9 94564218 94564392 -29511780 + B2_Mm2 SINE B2 2 174 -21 1 1306 605 105 11 0 chr9 94564436 94564531 -29511641 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 1 1306 324 0 0 0 chr9 94565575 94565611 -29510561 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1 1306 251 250 147 0 chr9 94565630 94565698 -29510474 - B1F SINE Alu -29 120 43 1 1306 4106 141 121 23 chr9 94566248 94567059 -29509113 + RMER19B LTR ERVK 1 890 -12 1 1306 1029 223 177 12 chr9 94567610 94567937 -29508235 + MTD LTR MaLR 1 381 -38 1 1306 515 271 0 15 chr9 94568367 94568498 -29507674 - RSINE1 SINE B4 -34 131 3 1 1306 446 235 0 0 chr9 94569412 94569497 -29506675 - B1F1 SINE Alu -55 94 10 1 1306 197 159 23 0 chr9 94569745 94569789 -29506383 + CT-rich Low_complexity Low_complexity 2 46 0 1 1306 884 59 8 0 chr9 94571285 94571404 -29504768 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 1306 393 230 3 0 chr9 94571405 94571515 -29504657 - B1_Mur4 SINE Alu -9 111 1 1 1306 213 65 0 0 chr9 94574559 94574590 -29501582 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1306 185 167 23 45 chr9 94575109 94575153 -29501019 + MIRc SINE MIR 114 156 -112 1 1306 443 333 0 27 chr9 94575690 94575825 -29500347 + B1F2 SINE Alu 5 135 -14 1 1306 255 31 0 0 chr9 94575825 94575857 -29500315 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1306 443 333 0 27 chr9 94575857 94575869 -29500303 + B1F2 SINE Alu 136 147 -2 1 1306 330 232 219 27 chr9 94576213 94576359 -29499813 - MIR SINE MIR -55 207 34 1 1306 183 162 0 0 chr9 94576380 94576417 -29499755 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1306 202 322 2 0 chr9 94576420 94576492 -29499680 - MIRb SINE MIR -94 174 102 1 1306 2410 145 52 10 chr9 94576634 94577038 -29499134 + MTC LTR MaLR 1 421 0 1 1306 853 180 0 0 chr9 94578129 94578268 -29497904 + B1_Mur4 SINE Alu 1 139 -11 1 1306 486 0 0 0 chr9 94578735 94578789 -29497383 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1306 261 0 0 0 chr9 94579584 94579613 -29496559 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1306 189 0 0 0 chr9 94579707 94579728 -29496444 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1306 238 267 33 55 chr9 94580572 94580592 -29495580 - PB1D10 SINE Alu -5 112 24 1 1306 243 212 0 70 chr9 94580592 94580663 -29495509 - ID_B1 SINE B4 -54 170 105 1 1306 489 377 112 8 chr9 94581870 94582255 -29493917 - LTR16B2 LTR ERVL 0 462 38 1 1306 185 0 40 0 chr9 94582285 94582310 -29493862 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1306 334 307 10 19 chr9 94583475 94583578 -29492594 + CT-rich Low_complexity Low_complexity 3 104 0 1 1306 253 351 97 5 chr9 94583709 94583924 -29492248 - MLT1J1 LTR MaLR -84 364 121 1 1306 216 0 0 0 chr9 94584263 94584287 -29491885 + (TATATG)n Simple_repeat Simple_repeat 5 28 0 1 1306 670 207 7 33 chr9 94584351 94584501 -29491671 + ID_B1 SINE B4 78 223 -1 1 1306 330 26 0 0 chr9 94586279 94586318 -29489854 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1306 281 287 52 31 chr9 94586791 94586888 -29489284 - PB1D10 SINE Alu -16 101 3 1 1306 510 245 28 21 chr9 94587702 94587844 -29488328 - B3 SINE B2 -3 213 71 1 1306 383 297 37 69 chr9 94587894 94588111 -29488061 - L1MA6 LINE L1 -5 6295 6086 1 1306 666 265 36 30 chr9 94588182 94588349 -29487823 - B3A SINE B2 -24 174 7 1 1306 342 239 0 0 chr9 94588391 94588458 -29487714 + MTE2b LTR MaLR 1 67 -312 1 1306 523 192 176 107 chr9 94588458 94588645 -29487527 + URR1B DNA MER1_type 1 200 -25 1 1306 992 245 161 4 chr9 94588697 94588971 -29487201 + MTE2b LTR MaLR 60 376 -3 1 1306 283 295 10 21 chr9 94588976 94589073 -29487099 - L1MA6 LINE L1 -267 6033 5938 1 1306 4210 95 28 2 chr9 94589605 94589718 -29486454 - Lx2 LINE L1 -1 6996 6884 1 1306 180 0 0 0 chr9 94589718 94589738 -29486434 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 1 1306 4210 95 28 2 chr9 94589738 94590202 -29485970 - Lx2 LINE L1 -114 6883 6405 1 1306 462 36 0 0 chr9 94591082 94591138 -29485034 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 1 1306 225 269 25 25 chr9 94591306 94591386 -29484786 + ID4 SINE ID 2 81 -2 1 1306 295 265 30 10 chr9 94594204 94594303 -29481869 - MLT1A1 LTR MaLR -279 129 29 1 1306 188 313 143 34 chr9 94594540 94594659 -29481513 + L2b LINE L2 3228 3359 -16 1 1306 290 231 15 0 chr9 94595478 94595543 -29480629 - ID4 SINE ID -9 74 9 1 1306 254 241 35 0 chr9 94595889 94595947 -29480225 - RLTR11A LTR ERVK 0 527 468 1 1306 1741 152 49 20 chr9 94595947 94596297 -29479875 - RLTR11A LTR ERVK -168 360 1 1 1306 284 341 73 11 chr9 94596864 94597042 -29479130 + MIRb SINE MIR 19 207 -61 1 1306 233 386 20 31 chr9 94598148 94598343 -29477829 + MIRb SINE MIR 54 246 -22 1 1306 210 320 60 45 chr9 94598402 94598536 -29477636 + MIRb SINE MIR 51 186 -82 1 1306 1122 177 32 27 chr9 94598688 94598909 -29477263 - ORR1B1 LTR MaLR -52 342 121 1 1306 1194 62 0 7 chr9 94599010 94599156 -29477016 + B1_Mm SINE Alu 1 145 -2 1 1306 234 0 0 0 chr9 94599213 94599239 -29476933 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 1 1306 21 0 0 0 chr9 94599275 94599296 -29476876 + AT_rich Low_complexity Low_complexity 1 21 0 1 1306 225 316 26 0 chr9 94600439 94600515 -29475657 + L1M5 LINE L1 5675 5752 -372 1 1306 369 310 101 0 chr9 94600845 94600974 -29475198 + B1F1 SINE Alu 1 142 -7 1 1306 362 261 15 7 chr9 94602136 94602271 -29473901 + (TCTG)n Simple_repeat Simple_repeat 4 139 0 1 1306 287 116 42 51 chr9 94602278 94602396 -29473776 + (TCTCTG)n Simple_repeat Simple_repeat 2 118 0 1 1306 238 219 16 0 chr9 94602440 94602504 -29473668 + CT-rich Low_complexity Low_complexity 1 65 0 1 1306 194 281 130 9 chr9 94604884 94604999 -29471173 + MIRc SINE MIR 90 218 -50 1 1306 29 0 0 0 chr9 94605764 94605793 -29470379 + AT_rich Low_complexity Low_complexity 1 29 0 1 1306 881 174 210 4 chr9 94606459 94606702 -29469470 + Lx9 LINE L1 7352 7644 0 1 1306 433 324 62 0 chr9 94606848 94606981 -29469191 - RSINE1 SINE B4 -2 163 22 1 1306 2338 155 32 2 chr9 94606981 94607382 -29468790 + MTC LTR MaLR 1 413 -8 1 1306 221 361 111 40 chr9 94607448 94607673 -29468499 - MIR SINE MIR -2 260 20 1 1306 863 105 8 0 chr9 94607674 94607807 -29468365 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 1 1306 1631 246 31 11 chr9 94607961 94608319 -29467853 - Lx5 LINE L1 0 7050 6686 1 1306 1146 117 0 0 chr9 94608584 94608763 -29467409 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 1306 1087 164 91 5 chr9 94608970 94609178 -29466994 + URR1A DNA MER1_type 1 226 0 1 1306 426 125 0 0 chr9 94610642 94610722 -29465450 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1306 306 123 0 0 chr9 94610723 94610780 -29465392 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1306 320 243 0 28 chr9 94611193 94611205 -29464967 + B4A SINE B4 76 85 -207 1 1306 466 291 0 0 chr9 94611205 94611322 -29464850 + PB1D10 SINE Alu 1 117 0 1 1306 811 178 14 0 chr9 94611482 94611628 -29464544 - B1_Mur4 SINE Alu 0 150 3 1 1306 215 73 54 18 chr9 94612626 94612682 -29463490 + (TTTTG)n Simple_repeat Simple_repeat 5 62 0 1 1306 214 209 0 0 chr9 94613582 94613625 -29462547 - ID4 SINE ID -39 44 2 1 1306 4758 173 101 110 chr9 94613703 94614031 -29462141 - RMER12 LTR ERVK -7 1315 890 1 1306 546 16 0 0 chr9 94614031 94614094 -29462078 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1306 4758 173 101 110 chr9 94614094 94615092 -29461080 - RMER12 LTR ERVK -433 889 1 1 1306 21 57 0 0 chr9 94616455 94616490 -29459682 + AT_rich Low_complexity Low_complexity 1 35 0 1 1306 3307 264 72 43 chr9 94616620 94616702 -29459470 - Lx9 LINE L1 -105 7539 7418 1 1306 468 0 0 0 chr9 94616702 94616754 -29459418 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1306 3307 264 72 43 chr9 94616754 94617758 -29458414 - Lx9 LINE L1 -227 7417 6423 1 1306 252 0 0 0 chr9 94617759 94617787 -29458385 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1306 315 0 0 0 chr9 94617824 94617859 -29458313 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1306 545 319 7 72 chr9 94617867 94618019 -29458153 - RSINE1 SINE B4 -21 144 3 1 1306 198 0 0 0 chr9 94618610 94618632 -29457540 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 1 1306 191 315 17 59 chr9 94621647 94621765 -29454407 - MIRb SINE MIR -52 216 104 1 1306 292 303 29 29 chr9 94621805 94621941 -29454231 + MER5A1 DNA MER1_type 2 137 -29 1 1306 552 237 96 0 chr9 94622727 94622862 -29453310 + ID_B1 SINE B4 76 223 -1 1 1306 348 282 222 15 chr9 94623187 94623385 -29452787 + L1MC2 LINE L1 6098 6336 -8 1 1306 416 253 53 3 chr9 94625903 94626023 -29450149 + B1F SINE Alu 21 145 -4 1 1306 33 56 0 0 chr9 94626324 94626378 -29449794 + AT_rich Low_complexity Low_complexity 1 54 0 1 1306 919 272 19 0 chr9 94626378 94626584 -29449588 - B3 SINE B2 -5 211 2 1 1306 313 312 159 8 chr9 94628604 94628730 -29447442 - ORR1E LTR MaLR -117 242 98 1 1306 222 37 0 0 chr9 94628730 94628757 -29447415 + (TCC)n Simple_repeat Simple_repeat 1 27 0 1 1306 1491 0 0 16 chr9 94628757 94628939 -29447233 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1306 903 261 63 20 chr9 94628940 94629239 -29446933 - Lx3C LINE L1 -5 6995 6669 1 1306 574 179 0 0 chr9 94629238 94629344 -29446828 + Lx2B LINE L1 6555 6660 -340 1 1306 356 213 49 85 chr9 94629344 94629360 -29446812 - ORR1E LTR MaLR -248 111 102 1 1306 1283 134 113 10 chr9 94629360 94629564 -29446608 + URR1A DNA MER1_type 2 226 0 1 1306 356 213 49 85 chr9 94629564 94629629 -29446543 - ORR1E LTR MaLR -258 101 33 1 1306 1245 82 0 0 chr9 94629782 94629953 -29446219 + (TATATG)n Simple_repeat Simple_repeat 3 173 0 1 1306 324 321 71 0 chr9 94630102 94630242 -29445930 - MIR SINE MIR -55 207 58 1 1306 1570 206 122 6 chr9 94630466 94630818 -29445354 - ORR1B1 LTR MaLR 0 394 2 2 1306 390 191 96 87 chr9 94631541 94631656 -29444516 + MTEa LTR MaLR 1 116 -263 2 1306 1269 184 9 5 chr9 94631679 94631903 -29444269 - URR1B DNA MER1_type 0 225 1 2 1306 267 292 122 27 chr9 94631923 94632071 -29444101 + MTEa LTR MaLR 195 356 -23 2 1306 499 308 47 17 chr9 94632201 94632373 -29443799 + MER63B DNA AcHobo 258 434 -2 2 1306 495 0 0 0 chr9 94632455 94632510 -29443662 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 2 1306 513 0 0 0 chr9 94633337 94633394 -29442778 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1307 232 194 45 72 chr9 94635081 94635192 -29440980 - RLTR40 LTR ERVK -140 677 570 2 1307 615 268 36 60 chr9 94635214 94635247 -29440925 - RSINE1 SINE B4 0 165 141 2 1307 320 43 22 0 chr9 94635247 94635293 -29440879 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1307 615 268 36 60 chr9 94635293 94635426 -29440746 - RSINE1 SINE B4 -25 140 3 2 1307 269 224 224 0 chr9 94635881 94635979 -29440193 + PB1D9 SINE Alu 1 120 0 2 1307 273 295 138 67 chr9 94636384 94636609 -29439563 - ORR1D1 LTR MaLR -133 241 1 2 1307 528 16 0 0 chr9 94637152 94637213 -29438959 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1307 258 302 139 36 chr9 94638391 94638556 -29437616 - MLT1H2 LTR MaLR -242 247 66 2 1307 252 0 0 0 chr9 94641245 94641273 -29434899 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1307 238 233 222 15 chr9 94641623 94641758 -29434414 + MIR SINE MIR 94 256 -6 2 1307 952 296 61 35 chr9 94641947 94642293 -29433879 - ORR1E LTR MaLR 0 359 5 2 1307 1955 287 30 62 chr9 94642295 94642967 -29433205 - MTE-int LTR MaLR -61 1519 870 2 1307 284 298 24 0 chr9 94642967 94643051 -29433121 - MERVL_2A-int LTR ERVL -692 5069 4984 2 1307 859 269 12 11 chr9 94643083 94643294 -29432878 - ORR1E LTR MaLR -167 207 1 2 1307 289 242 162 57 chr9 94643491 94643596 -29432576 + PB1D10 SINE Alu 1 116 -1 2 1307 780 91 0 0 chr9 94644027 94644137 -29432035 + (TCC)n Simple_repeat Simple_repeat 2 111 0 2 1307 1043 249 107 37 chr9 94644866 94645267 -29430905 + Lx8 LINE L1 6850 7278 -195 2 1307 200 227 26 43 chr9 94645410 94645525 -29430647 + A-rich Low_complexity Low_complexity 5 117 0 2 1307 487 193 82 56 chr9 94645538 94645716 -29430456 + B3 SINE B2 23 192 -3 2 1307 195 42 0 0 chr9 94645990 94646014 -29430158 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1307 650 322 62 55 chr9 94646285 94646594 -29429578 - MER2 DNA MER2_type -14 331 21 2 1307 377 211 28 0 chr9 94647210 94647281 -29428891 - PB1D7 SINE Alu -10 110 38 2 1307 483 102 11 22 chr9 94647507 94647597 -29428575 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1307 770 301 72 8 chr9 94647599 94647850 -29428322 - B4A SINE B4 -25 267 1 2 1307 902 179 7 197 chr9 94648069 94648223 -29427949 - URR1A DNA MER1_type 0 226 94 2 1307 3507 50 0 0 chr9 94648223 94648621 -29427551 + L1_Mus1 LINE L1 6167 6564 -3 2 1307 902 179 7 197 chr9 94648621 94648745 -29427427 - URR1A DNA MER1_type -133 93 1 2 1307 1083 38 0 0 chr9 94650260 94650392 -29425780 + (TTTC)n Simple_repeat Simple_repeat 3 134 0 2 1307 22 0 0 0 chr9 94650443 94650465 -29425707 + AT_rich Low_complexity Low_complexity 1 22 0 2 1307 21 0 0 0 chr9 94652324 94652345 -29423827 + AT_rich Low_complexity Low_complexity 1 21 0 2 1307 309 295 179 37 chr9 94652346 94652508 -29423664 - LTR16A LTR ERVL -265 186 2 2 1307 27 29 0 0 chr9 94653004 94653038 -29423134 + AT_rich Low_complexity Low_complexity 1 34 0 2 1307 8260 35 12 3 chr9 94655911 94656842 -29419330 + L1Md_F2 LINE L1 5643 6581 -1 2 1307 368 243 156 48 chr9 94657211 94657397 -29418775 - MER31-int LTR ERV1 -13 4923 4718 2 1307 336 314 86 30 chr9 94657569 94657766 -29418406 - MER115 DNA Tip100 0 693 486 2 1307 378 0 0 0 chr9 94658009 94658051 -29418121 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1307 342 0 0 0 chr9 94658051 94658088 -29418084 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1307 409 348 49 39 chr9 94658252 94658557 -29417615 - MLT1D LTR MaLR -185 320 13 2 1307 253 307 53 87 chr9 94659024 94659231 -29416941 - L2b LINE L2 -8 3379 3180 2 1307 197 336 28 46 chr9 94659689 94659798 -29416374 + L2c LINE L2 3256 3362 -25 2 1307 431 274 90 17 chr9 94661891 94661955 -29414217 - L1MC3 LINE L1 -119 7666 7600 2 1307 261 0 0 0 chr9 94661955 94661984 -29414188 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2 1307 431 274 90 17 chr9 94661984 94662097 -29414075 - L1MC3 LINE L1 -186 7599 7476 2 1307 378 0 0 0 chr9 94662098 94662140 -29414032 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 2 1307 5370 115 9 7 chr9 94662147 94662900 -29413272 - Lx2A1 LINE L1 -5 7003 6249 2 1307 825 130 76 64 chr9 94662903 94663075 -29413097 - B2_Mm2 SINE B2 -15 180 7 2 1307 1706 288 139 32 chr9 94663080 94664016 -29412156 - L1MC3 LINE L1 -292 7493 6458 2 1307 343 271 24 61 chr9 94664039 94664204 -29411968 - L1MC3 LINE L1 -1402 6383 6225 2 1307 247 49 49 0 chr9 94664205 94664246 -29411926 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1307 831 318 79 31 chr9 94664952 94665262 -29410910 + Lx8 LINE L1 6767 7098 -375 2 1307 2546 75 22 6 chr9 94665262 94665584 -29410588 + ORR1A2 LTR MaLR 1 327 0 2 1307 831 318 79 31 chr9 94665584 94665692 -29410480 + Lx8 LINE L1 7099 7205 -268 2 1307 306 345 81 32 chr9 94665850 94666159 -29410013 + L1ME4a LINE L1 5629 5952 -172 2 1307 468 0 0 0 chr9 94666367 94666419 -29409753 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1307 1080 327 110 36 chr9 94666517 94667127 -29409045 + MER21B LTR ERV1 92 746 -117 2 1307 324 321 136 60 chr9 94667176 94667626 -29408546 - LTR33B LTR ERVL -5 498 15 2 1307 1018 233 101 120 chr9 94668954 94669320 -29406852 - MTE2b LTR MaLR -18 361 3 2 1307 305 258 11 53 chr9 94669383 94669477 -29406695 + L2a LINE L2 3336 3425 -1 2 1307 22 35 0 0 chr9 94669799 94669828 -29406344 + AT_rich Low_complexity Low_complexity 1 29 0 2 1307 214 177 47 31 chr9 94670219 94670283 -29405889 + T-rich Low_complexity Low_complexity 6 70 0 2 1307 321 26 0 0 chr9 94670302 94670340 -29405832 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 2 1307 206 81 27 0 chr9 94671156 94671193 -29404979 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1307 1219 172 352 16 chr9 94672116 94672431 -29403741 + MTC LTR MaLR 1 421 0 2 1307 324 278 83 87 chr9 94672553 94672829 -29403343 - B4 SINE B4 -16 276 2 2 1307 220 171 78 13 chr9 94672939 94673016 -29403156 + T-rich Low_complexity Low_complexity 2 83 0 2 1307 355 211 0 0 chr9 94673019 94673091 -29403081 - B1F2 SINE Alu -45 72 1 2 1307 308 250 0 42 chr9 94673031 94673102 -29403070 - B4A SINE B4 -147 145 78 2 1307 663 223 112 13 chr9 94674315 94674547 -29401625 - L1M3 LINE L1 -3404 2736 2482 2 1307 30 27 0 0 chr9 94674547 94674584 -29401588 + AT_rich Low_complexity Low_complexity 1 37 0 2 1307 916 155 77 6 chr9 94674584 94674766 -29401406 + URR1A DNA MER1_type 32 226 0 2 1307 818 282 28 8 chr9 94674768 94675015 -29401157 + Lx7 LINE L1 7023 7274 -422 2 1307 205 265 0 0 chr9 94675905 94675954 -29400218 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 2 1307 218 387 19 0 chr9 94677253 94677359 -29398813 - MIRb SINE MIR -122 146 39 2 1307 882 323 40 66 chr9 94677719 94678266 -29397906 - RMER5 LTR ERV1 -1 533 1 2 1307 299 167 0 0 chr9 94679806 94679854 -29396318 - L2a LINE L2 -6 3420 3373 2 1307 3133 163 50 16 chr9 94680690 94681245 -29394927 - RMER15 LTR ERVL -1 574 1 2 1307 42226 4 0 0 chr9 94681595 94687963 -29388209 - L1Md_A LINE L1 0 6582 214 2 1307 341 206 16 0 chr9 94689935 94689998 -29386174 - ID4_ SINE ID -18 65 2 2 1307 387 274 63 0 chr9 94690058 94690153 -29386019 - B3A SINE B2 -96 102 2 2 1307 336 267 36 36 chr9 94690158 94690277 -29385895 - PB1D10 SINE Alu -1 116 2 2 1307 306 333 44 0 chr9 94691865 94691955 -29384217 - B1F SINE Alu -46 103 10 2 1307 217 343 95 16 chr9 94692437 94692599 -29383573 - MIRc SINE MIR -84 192 14 2 1307 275 308 0 0 chr9 94692655 94692733 -29383439 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1307 663 311 6 18 chr9 94692757 94692921 -29383251 - B3A SINE B2 -32 166 5 2 1307 1466 47 0 0 chr9 94692945 94693116 -29383056 - L1_Mus1 LINE L1 -4 6563 6393 2 1307 225 186 0 23 chr9 94693758 94693802 -29382370 + CT-rich Low_complexity Low_complexity 3 45 0 2 1307 266 364 131 52 chr9 94694159 94694426 -29381746 - MER102c DNA MER1_type -42 289 2 2 1307 297 328 54 15 chr9 94694506 94694636 -29381536 + MER5A1 DNA MER1_type 1 135 -31 2 1307 387 41 0 0 chr9 94695242 94695291 -29380881 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1307 1738 224 47 25 chr9 94695855 94696258 -29379914 - MTD LTR MaLR 0 419 8 2 1307 227 163 20 20 chr9 94699252 94699302 -29376870 + (TATG)n Simple_repeat Simple_repeat 4 53 0 2 1307 347 256 24 0 chr9 94699383 94699465 -29376707 - B4 SINE B4 -208 84 1 2 1307 255 61 0 0 chr9 94699821 94699854 -29376318 + (TTA)n Simple_repeat Simple_repeat 3 35 0 2 1307 303 241 58 0 chr9 94699886 94699973 -29376199 + MER5A1 DNA MER1_type 7 98 -68 2 1307 219 278 19 0 chr9 94700078 94700132 -29376040 - MER5B DNA MER1_type -57 121 67 2 1307 288 0 0 0 chr9 94701294 94701326 -29374846 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1307 563 264 34 0 chr9 94701342 94701490 -29374682 + Lx9 LINE L1 6341 6493 -1151 2 1307 793 286 133 28 chr9 94701497 94701925 -29374247 + Lx9 LINE L1 7172 7644 0 2 1307 191 74 73 18 chr9 94702053 94702108 -29374064 + T-rich Low_complexity Low_complexity 2 59 0 2 1307 627 275 27 53 chr9 94703620 94703808 -29372364 + B3A SINE B2 2 184 -14 2 1307 334 245 163 0 chr9 94705024 94705122 -29371050 + MIR SINE MIR 76 189 -73 2 1307 305 122 51 18 chr9 94705292 94705362 -29370810 - MTD LTR MaLR 0 419 295 3 1307 483 355 28 43 chr9 94705869 94706151 -29370021 - MT2A LTR ERVL -102 431 154 3 1307 270 264 91 11 chr9 94706165 94706253 -29369919 - MTD LTR MaLR -319 100 6 3 1307 1288 250 117 3 chr9 94706258 94706583 -29369589 - MTD LTR MaLR -57 362 1 3 1307 36 23 0 0 chr9 94706635 94706678 -29369494 + AT_rich Low_complexity Low_complexity 1 43 0 3 1307 207 314 57 41 chr9 94707357 94707480 -29368692 + L2c LINE L2 3254 3378 -9 3 1307 1297 151 97 0 chr9 94707818 94708024 -29368148 + URR1A DNA MER1_type 1 226 0 3 1307 238 345 111 22 chr9 94708124 94708305 -29367867 + MIR SINE MIR 11 207 -55 3 1307 305 159 16 0 chr9 94708485 94708548 -29367624 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1307 4664 201 35 49 chr9 94708844 94709893 -29366279 - Lx5 LINE L1 0 7050 6016 3 1307 1280 126 5 0 chr9 94709886 94710076 -29366096 + Lx5 LINE L1 5830 6020 -1030 3 1307 353 272 111 8 chr9 94711277 94711403 -29364769 - L1MC5 LINE L1 -577 7384 7246 3 1307 1389 250 126 6 chr9 94711538 94711904 -29364268 + MTD LTR MaLR 2 411 -8 3 1307 1069 253 126 51 chr9 94711911 94712378 -29363794 - MER90a LTR ERV1 -96 518 17 3 1307 307 329 8 28 chr9 94712725 94712875 -29363297 - L1MC5 LINE L1 -939 6943 6739 3 1307 1208 75 0 7 chr9 94713777 94713924 -29362248 - B1_Mus2 SINE Alu 0 147 2 3 1307 207 217 82 16 chr9 94714937 94714998 -29361174 + MIR3 SINE MIR 124 188 -20 3 1307 283 302 120 8 chr9 94717003 94717120 -29359052 + MER33 DNA MER1_type 31 160 -164 3 1307 297 274 41 0 chr9 94717137 94717210 -29358962 - ID2 SINE ID -2 81 6 3 1307 396 236 43 37 chr9 94717216 94717379 -29358793 + MER33 DNA MER1_type 151 314 -10 3 1307 1941 131 61 69 chr9 94717493 94717845 -29358327 + ORR1C1 LTR MaLR 6 359 -19 3 1307 456 19 0 0 chr9 94717845 94717898 -29358274 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1307 1941 131 61 69 chr9 94717898 94717921 -29358251 + ORR1C1 LTR MaLR 360 378 0 3 1307 396 0 0 0 chr9 94718242 94718286 -29357886 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1307 298 204 69 79 chr9 94718769 94718870 -29357302 + MIRb SINE MIR 108 207 -61 3 1307 1194 141 49 0 chr9 94718898 94719082 -29357090 - B2_Mm2 SINE B2 -2 193 1 3 1307 693 282 130 49 chr9 94720081 94720405 -29355767 + MLT1D LTR MaLR 1 350 -155 3 1307 875 291 119 10 chr9 94720408 94720720 -29355452 - ORR1E LTR MaLR -5 354 9 3 1307 361 301 22 36 chr9 94721123 94721138 -29355034 + ID_B1 SINE B4 82 217 -7 3 1307 426 287 24 8 chr9 94721138 94721261 -29354911 + B1F2 SINE Alu 18 142 -7 3 1307 1198 252 84 6 chr9 94721283 94721603 -29354569 + MTEb LTR MaLR 35 379 0 3 1307 4704 12 2 0 chr9 94722107 94722599 -29353573 + MT2_Mm LTR ERVL 1 493 0 3 1307 41458 15 14 0 chr9 94722599 94727896 -29348276 + MERVL-int LTR ERVL 1 5371 -114 3 1307 397 123 13 40 chr9 94727896 94727972 -29348200 + ORR1A3-int LTR MaLR 567 640 -1323 3 1307 322 0 0 0 chr9 94727972 94728010 -29348162 + MERVL-int LTR ERVL 5448 5485 0 3 1307 4704 12 2 0 chr9 94728010 94728502 -29347670 + MT2_Mm LTR ERVL 1 493 0 3 1307 528 310 32 16 chr9 94728721 94728908 -29347264 - B3A SINE B2 -6 192 3 3 1307 285 203 0 33 chr9 94729244 94729305 -29346867 + MTE2a LTR MaLR 1 59 -320 3 1307 629 221 26 32 chr9 94729369 94729523 -29346649 + MTE2a LTR MaLR 227 379 0 3 1307 303 268 112 56 chr9 94729933 94730202 -29345970 + L1M2 LINE L1 2899 3182 -2961 3 1307 364 231 13 13 chr9 94730749 94730828 -29345344 + ID4 SINE ID 2 80 -3 3 1307 333 370 137 39 chr9 94731188 94731525 -29344647 - LTR33 LTR ERVL -136 379 10 3 1307 547 261 22 7 chr9 94731722 94731861 -29344311 + B1F1 SINE Alu 1 141 -8 3 1307 241 259 0 36 chr9 94731882 94731938 -29344234 + ID4 SINE ID 23 76 -7 3 1307 540 301 25 38 chr9 94732678 94732837 -29343335 - RSINE1 SINE B4 -4 161 5 3 1307 29 0 0 0 chr9 94732891 94732920 -29343252 + AT_rich Low_complexity Low_complexity 1 29 0 3 1307 374 0 22 0 chr9 94733131 94733177 -29342995 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 1307 254 320 81 8 chr9 94733190 94733313 -29342859 + MER20 DNA MER1_type 81 212 -7 3 1307 268 329 77 45 chr9 94734355 94734682 -29341490 + L1MC LINE L1 5313 5645 -2237 3 1307 195 114 0 0 chr9 94734695 94734730 -29341442 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1307 552 110 74 38 chr9 94735092 94735246 -29340926 + Lx3C LINE L1 6826 6981 0 3 1307 419 323 69 50 chr9 94735251 94735554 -29340618 + MLT1M LTR MaLR 152 460 -212 3 1307 324 326 112 58 chr9 94735745 94735986 -29340186 - LTR78 LTR ERV1 -162 1142 889 3 1307 267 79 0 0 chr9 94736570 94736608 -29339564 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1307 224 345 103 27 chr9 94737049 94737195 -29338977 + MIR3 SINE MIR 27 183 -25 3 1307 301 272 94 16 chr9 94737221 94737348 -29338824 - MER5A DNA MER1_type -28 161 25 3 1307 360 279 21 3 chr9 94737618 94737736 -29338436 + ID4_ SINE ID 9 129 -23 3 1307 24 0 0 0 chr9 94739948 94739972 -29336200 + AT_rich Low_complexity Low_complexity 1 24 0 3 1307 252 0 0 0 chr9 94741820 94741848 -29334324 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1307 204 259 0 18 chr9 94741889 94741944 -29334228 - L2c LINE L2 0 3387 3334 3 1307 260 336 32 24 chr9 94742520 94742645 -29333527 - MIR3 SINE MIR -7 201 76 3 1307 390 69 103 0 chr9 94743704 94743762 -29332410 - 4.5SRNA scRNA scRNA -2 92 29 3 1307 2416 83 0 13 chr9 94743762 94744080 -29332092 + L1Md_F2 LINE L1 6261 6574 -8 3 1307 559 200 327 6 chr9 94744405 94744566 -29331606 - B3 SINE B2 -1 215 3 3 1307 966 138 0 0 chr9 94744919 94745079 -29331093 + (TCTA)n Simple_repeat Simple_repeat 2 161 0 3 1307 180 0 0 0 chr9 94746095 94746115 -29330057 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 3 1307 803 347 65 36 chr9 94746270 94746685 -29329487 - MLT1E2 LTR MaLR -24 603 177 3 1307 24 0 0 0 chr9 94747096 94747120 -29329052 + AT_rich Low_complexity Low_complexity 1 24 0 3 1307 3069 297 74 29 chr9 94747164 94748541 -29327631 + Lx8 LINE L1 5880 7318 -155 3 1307 361 173 118 131 chr9 94748428 94748581 -29327591 + RMER1C Other Other 1076 1226 -116 3 1307 216 154 0 0 chr9 94748583 94748635 -29327537 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 3 1307 1065 24 0 0 chr9 94748636 94748763 -29327409 - B1_Mm SINE Alu -2 145 19 3 1307 453 255 40 40 chr9 94748798 94748949 -29327223 - MLT1E2 LTR MaLR -432 195 45 3 1307 282 325 13 0 chr9 94749028 94749105 -29327067 - ID4 SINE ID -4 79 2 3 1307 239 284 68 0 chr9 94750344 94750418 -29325754 - MER105 DNA DNA -64 140 62 3 1307 935 304 57 37 chr9 94750489 94750946 -29325226 - Charlie1b DNA MER1_type -56 467 2 3 1307 185 224 17 0 chr9 94752605 94752663 -29323509 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1307 1266 61 0 0 chr9 94753912 94754059 -29322113 - B1_Mus2 SINE Alu 0 147 1 3 1307 311 200 26 13 chr9 94754338 94754414 -29321758 - L1MA8 LINE L1 -124 6167 6091 3 1307 405 0 0 0 chr9 94755608 94755653 -29320519 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1307 348 24 0 0 chr9 94755653 94755693 -29320479 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1307 188 302 35 78 chr9 94755806 94755921 -29320251 - L2c LINE L2 -354 3033 2924 3 1307 1641 265 51 75 chr9 94758132 94758841 -29317331 - Lx9 LINE L1 -42 7602 6911 3 1307 414 57 0 0 chr9 94758875 94758928 -29317244 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1307 307 224 45 0 chr9 94759023 94759090 -29317082 - Lx9 LINE L1 -737 6907 6838 3 1307 874 241 15 65 chr9 94759102 94759364 -29316808 + Lx9 LINE L1 6585 6833 -811 3 1307 313 282 0 14 chr9 94759923 94759995 -29316177 + ID4 SINE ID 4 74 -9 3 1307 490 277 84 11 chr9 94760104 94760294 -29315878 - Tigger7 DNA MER2_type -6 2485 2282 3 1307 268 306 26 18 chr9 94760300 94760413 -29315759 - Tigger7 DNA MER2_type -2375 116 3 3 1307 267 276 23 30 chr9 94760590 94760721 -29315451 - MamRep1161 DNA TcMar -790 167 38 3 163 22198 133 10 6 chr9 94761857 94766325 -29309847 - L1_Mus4 LINE L1 -1 6635 2146 3 1308 6154 102 21 22 chr9 94766310 94767450 -29308722 - L1VL2 LINE L1 -2398 1300 178 3 1308 2289 71 0 52 chr9 94767600 94767910 -29308262 + L1_Mus2 LINE L1 6273 6566 0 3 1308 276 281 31 0 chr9 94768054 94768118 -29308054 + B1F SINE Alu 77 142 -7 3 1308 1634 230 95 21 chr9 94768181 94768559 -29307613 - MTD LTR MaLR -2 417 12 3 1308 526 41 0 0 chr9 94770514 94770587 -29305585 - 4.5SRNA scRNA scRNA -14 80 8 3 1308 1812 15 0 0 chr9 94770588 94770789 -29305383 + L1Md_T LINE L1 5386 5586 -297 3 1308 8859 39 1 0 chr9 94770789 94771783 -29304389 + L1Md_T LINE L1 5587 6581 -1 3 1308 969 211 0 31 chr9 94771783 94771806 -29304366 + L1M2 LINE L1 5616 5632 -680 3 1308 185 65 0 31 chr9 94771870 94771902 -29304270 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 3 1308 260 321 96 42 chr9 94773041 94773301 -29302871 + L1MEe LINE L1 944 1217 -4902 3 1308 326 331 130 48 chr9 94773512 94773867 -29302305 + L1MEe LINE L1 1338 1721 -4428 3 1308 3040 150 122 4 chr9 94776198 94776721 -29299451 + RMER4B LTR ERVK 1 585 0 3 1308 28 0 0 0 chr9 94777310 94777338 -29298834 + AT_rich Low_complexity Low_complexity 1 28 0 3 1308 264 305 63 0 chr9 94777708 94777803 -29298369 + MLT1J LTR MaLR 101 201 -311 3 1308 640 273 142 54 chr9 94777897 94778269 -29297903 + MLT1A1 LTR MaLR 2 406 -2 3 1308 565 324 6 6 chr9 94778295 94778481 -29297691 + B3A SINE B2 8 188 -28 3 1308 917 284 25 51 chr9 94778985 94779260 -29296912 + B4A SINE B4 7 274 -18 3 1308 1063 32 25 6 chr9 94780208 94780365 -29295807 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 3 1308 597 28 0 0 chr9 94781166 94781237 -29294935 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1308 315 333 105 0 chr9 94781261 94781366 -29294806 - ID_B1 SINE B4 -20 204 89 3 1308 258 355 169 28 chr9 94782333 94782623 -29293549 + L3 LINE CR1 3339 3669 -820 3 1308 621 239 6 74 chr9 94782978 94783154 -29293018 + RSINE1 SINE B4 2 165 0 3 1308 344 255 40 87 chr9 94783224 94783374 -29292798 + B3A SINE B2 1 143 -55 3 1308 216 0 0 0 chr9 94783798 94783822 -29292350 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 1308 198 0 0 0 chr9 94784417 94784439 -29291733 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 4 1308 203 250 0 0 chr9 94784523 94784567 -29291605 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1308 331 331 57 28 chr9 94785432 94785609 -29290563 - MIRb SINE MIR -16 252 71 4 1308 237 346 50 53 chr9 94788050 94788230 -29287942 - MER102b DNA MER1_type -46 295 127 4 1308 1623 124 58 0 chr9 94788262 94788519 -29287653 - Lx3B LINE L1 -3 6970 6699 4 1308 696 148 355 0 chr9 94788705 94788860 -29287312 + B3 SINE B2 1 210 -6 4 1308 270 0 0 0 chr9 94789345 94789375 -29286797 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 1308 690 163 30 44 chr9 94789438 94789573 -29286599 - B1F SINE Alu -14 135 3 4 1308 332 290 21 90 chr9 94789451 94789595 -29286577 - B4 SINE B4 -86 206 73 4 1308 812 276 163 22 chr9 94789617 94789856 -29286316 - L1MA6 LINE L1 -20 6280 6020 4 1308 713 61 0 10 chr9 94789856 94789956 -29286216 + (TCC)n Simple_repeat Simple_repeat 3 101 0 4 1308 812 276 163 22 chr9 94789956 94790213 -29285959 - L1MA6 LINE L1 -281 6019 5714 4 1308 713 284 67 29 chr9 94790245 94790799 -29285373 - L1MA6 LINE L1 -677 5635 5041 4 1308 217 338 185 33 chr9 94791436 94791647 -29284525 + MIRb SINE MIR 13 255 -13 4 1308 333 118 0 0 chr9 94791667 94791718 -29284454 + (CTA)n Simple_repeat Simple_repeat 1 51 0 4 1308 987 297 59 40 chr9 94791764 94792118 -29284054 - LTR69 LTR ERVL -19 569 209 4 1308 270 189 40 26 chr9 94793517 94793593 -29282579 + L1M5 LINE L1 4488 4564 -1582 4 1308 639 282 68 11 chr9 94793635 94793825 -29282347 + MTC LTR MaLR 1 201 -220 4 1308 252 210 48 0 chr9 94793826 94793888 -29282284 + A-rich Low_complexity Low_complexity 4 68 0 4 1308 485 278 104 26 chr9 94793911 94794103 -29282069 + MTC LTR MaLR 213 419 0 4 1308 403 277 90 122 chr9 94794186 94794408 -29281764 - MLT1A1 LTR MaLR -193 215 1 4 1308 2484 308 44 23 chr9 94794934 94796032 -29280140 - Lx8 LINE L1 -226 7247 6127 4 1308 768 52 0 0 chr9 94796139 94796236 -29279936 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1308 184 172 17 17 chr9 94797408 94797467 -29278705 + CT-rich Low_complexity Low_complexity 5 63 0 4 1308 23 0 0 0 chr9 94798030 94798053 -29278119 + AT_rich Low_complexity Low_complexity 1 23 0 4 1308 435 300 26 35 chr9 94799646 94799760 -29276412 - RSINE1 SINE B4 -6 159 47 4 1308 551 167 157 0 chr9 94799822 94799924 -29276248 - B3 SINE B2 -93 123 6 4 1308 246 250 14 42 chr9 94799950 94800021 -29276151 - ID4 SINE ID -14 69 1 4 1308 285 261 42 8 chr9 94800424 94800544 -29275628 - HAL1 LINE L1 -1414 1093 970 4 1308 321 47 0 0 chr9 94801413 94801456 -29274716 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4 1308 23 33 0 0 chr9 94801595 94801625 -29274547 + AT_rich Low_complexity Low_complexity 1 30 0 4 1308 243 88 0 0 chr9 94801742 94801776 -29274396 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4 1308 207 67 21 62 chr9 94802033 94802081 -29274091 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1308 233 162 0 0 chr9 94802841 94802878 -29273294 + B3A SINE B2 1 37 -161 4 1308 805 172 0 32 chr9 94803403 94803520 -29272652 + polypurine Low_complexity Low_complexity 1 114 0 4 1308 1203 39 0 33 chr9 94803520 94803704 -29272468 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 1308 805 172 0 32 chr9 94803704 94803772 -29272400 + polypurine Low_complexity Low_complexity 115 180 0 4 1308 858 91 0 0 chr9 94804474 94804595 -29271577 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 4 1308 1135 154 44 49 chr9 94804879 94805104 -29271068 - URR1B DNA MER1_type -1 224 1 4 1308 279 0 0 0 chr9 94805741 94805772 -29270400 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1308 260 387 44 25 chr9 94806004 94806163 -29270009 - MLT1F LTR MaLR -386 162 1 4 1308 384 22 0 0 chr9 94813292 94813337 -29262835 + (TCTCTG)n Simple_repeat Simple_repeat 1 45 0 4 1308 482 118 11 0 chr9 94813341 94813434 -29262738 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1308 322 360 79 31 chr9 94814027 94814256 -29261916 + MIRb SINE MIR 21 260 -8 4 1308 279 0 0 0 chr9 94815514 94815545 -29260627 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1308 432 0 0 0 chr9 94815545 94815592 -29260580 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1308 39138 9 0 0 chr9 94816295 94821675 -29254497 - L1Md_A LINE L1 0 6582 1203 4 1308 1543 15 5 0 chr9 94821665 94821862 -29254310 - L1Md_A LINE L1 -6184 540 343 4 1308 192 321 96 37 chr9 94823868 94824004 -29252168 + MIRb SINE MIR 74 217 -51 4 1308 477 299 36 14 chr9 94823994 94824133 -29252039 + MIRb SINE MIR 104 245 -23 4 1308 225 0 0 0 chr9 94824703 94824728 -29251444 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1308 314 286 149 44 chr9 94825574 94826111 -29250061 + L2a LINE L2 2827 3426 0 4 1308 181 222 0 0 chr9 94827294 94827330 -29248842 - L2 LINE L2 -3290 129 94 4 1308 1414 240 89 140 chr9 94828078 94828844 -29247328 - RLTR22_Mur LTR ERVK -210 1638 730 4 1308 2893 122 77 60 chr9 94828844 94829392 -29246780 - RLTR31B_Mm LTR ERVK 0 557 1 4 1308 1414 231 60 126 chr9 94829392 94829434 -29246738 - RLTR22_Mur LTR ERVK -692 1156 1114 4 1308 207 0 0 0 chr9 94829434 94829457 -29246715 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1308 1414 231 60 126 chr9 94829457 94829500 -29246672 - RLTR22_Mur LTR ERVK -735 1113 1076 4 1308 1044 75 0 0 chr9 94829500 94829647 -29246525 + (CTCTG)n Simple_repeat Simple_repeat 4 150 0 4 1308 1993 271 37 94 chr9 94829659 94830507 -29245665 - RLTR22_Mur LTR ERVK -1049 799 1 4 1308 245 146 21 0 chr9 94831445 94831493 -29244679 + GA-rich Low_complexity Low_complexity 4 52 0 4 1308 539 305 92 2 chr9 94831577 94831781 -29244391 - MIR SINE MIR -38 230 11 4 1308 193 289 94 24 chr9 94833119 94833204 -29242968 - MIRc SINE MIR -110 158 68 4 1308 366 114 0 0 chr9 94834905 94834975 -29241197 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 4 1308 570 29 0 0 chr9 94835014 94835082 -29241090 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 4 1308 444 254 43 17 chr9 94835951 94836067 -29240105 + PB1D7 SINE Alu 1 119 -1 4 1308 387 0 0 0 chr9 94838745 94838788 -29237384 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 4 1308 228 35 0 0 chr9 94841575 94841604 -29234568 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1308 277 378 53 53 chr9 94842248 94842567 -29233605 - L4 LINE RTE -182 1847 1529 4 1308 402 21 0 0 chr9 94843695 94843742 -29232430 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1308 737 288 61 68 chr9 94843760 94844054 -29232118 - B4A SINE B4 0 292 1 4 1308 1120 194 18 58 chr9 94844413 94844637 -29231535 + B3 SINE B2 2 216 0 4 1308 261 0 0 0 chr9 94845108 94845137 -29231035 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1308 701 256 106 43 chr9 94845158 94845317 -29230855 - B4A SINE B4 -24 268 90 4 1308 201 39 0 0 chr9 94845317 94845343 -29230829 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 4 1308 701 256 106 43 chr9 94845343 94845391 -29230781 - B4A SINE B4 -203 89 48 4 1308 297 0 0 0 chr9 94845773 94845806 -29230366 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1308 272 271 59 0 chr9 94846034 94846119 -29230053 + MLT1N2 LTR MaLR 465 554 -8 4 1308 216 0 0 0 chr9 94846457 94846481 -29229691 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1308 1524 275 13 11 chr9 94848820 94849195 -29226977 - MTE2a LTR MaLR -2 377 2 4 1308 432 0 0 0 chr9 94850590 94850638 -29225534 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1308 2670 274 163 15 chr9 94851500 94851696 -29224476 - Lx8 LINE L1 0 7473 7219 4 1308 435 19 0 0 chr9 94851696 94851748 -29224424 + (CCA)n Simple_repeat Simple_repeat 3 54 0 4 1308 2670 274 163 15 chr9 94851748 94852599 -29223573 - Lx8 LINE L1 -255 7218 6272 4 1308 269 295 10 67 chr9 94852698 94852849 -29223323 - Lx8 LINE L1 -1499 5974 5836 4 1308 780 207 64 49 chr9 94852872 94853075 -29223097 - Lx7 LINE L1 -1827 5869 5664 4 1308 24 53 0 0 chr9 94854192 94854230 -29221942 + AT_rich Low_complexity Low_complexity 1 38 0 4 1308 1239 43 0 0 chr9 94854281 94854420 -29221752 + B1_Mm SINE Alu 1 139 -8 4 1308 266 50 25 0 chr9 94854420 94854460 -29221712 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1308 316 200 28 9 chr9 94855581 94855687 -29220485 + (TATAA)n Simple_repeat Simple_repeat 5 112 0 4 1308 359 297 65 3 chr9 94856827 94857007 -29219165 - MER44D DNA MER2_type -136 203 6 4 1308 443 300 164 45 chr9 94858038 94858373 -29217799 - RMER13A LTR ERVK -373 487 113 4 1308 517 333 39 0 chr9 94858657 94858861 -29217311 - L2 LINE L2 -557 2862 2651 4 1308 202 70 93 0 chr9 94859419 94859462 -29216710 + CT-rich Low_complexity Low_complexity 2 48 0 4 1308 1089 157 183 0 chr9 94861956 94862147 -29214025 - URR1A DNA MER1_type 0 226 1 4 1308 574 336 43 72 chr9 94862156 94862210 -29213962 - MLT1C LTR MaLR -52 338 285 4 1308 1169 73 12 0 chr9 94862210 94862374 -29213798 + (TCTCCC)n Simple_repeat Simple_repeat 2 167 0 4 1308 910 271 62 7 chr9 94862374 94862665 -29213507 - MLT1C LTR MaLR -165 302 3 4 1308 275 368 46 32 chr9 94865854 94866070 -29210102 - L2 LINE L2 -892 2527 2309 4 1308 247 372 21 21 chr9 94866460 94866600 -29209572 - L2 LINE L2 -1440 1979 1840 4 1308 1936 191 44 54 chr9 94866839 94867227 -29208945 - ORR1C2 LTR MaLR 0 384 1 4 1308 348 24 0 0 chr9 94867805 94867846 -29208326 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1308 285 29 0 0 chr9 94870108 94870142 -29206030 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1308 441 0 0 0 chr9 94870949 94870998 -29205174 + (TTG)n Simple_repeat Simple_repeat 3 51 0 4 1308 252 0 0 0 chr9 94872339 94872367 -29203805 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1308 221 368 43 36 chr9 94872680 94872818 -29203354 - MER5B DNA MER1_type -33 145 7 4 1308 393 326 15 23 chr9 94872958 94873090 -29203082 - MER5B DNA MER1_type 0 178 48 4 1308 22 0 0 0 chr9 94873449 94873471 -29202701 + AT_rich Low_complexity Low_complexity 1 22 0 4 1308 22 0 0 0 chr9 94877288 94877310 -29198862 + AT_rich Low_complexity Low_complexity 1 22 0 4 1308 207 85 0 60 chr9 94877567 94877617 -29198555 + (TTGG)n Simple_repeat Simple_repeat 4 50 0 4 1308 1801 190 111 18 chr9 94877621 94877729 -29198443 + MTD LTR MaLR 5 135 -284 4 1308 306 0 0 0 chr9 94877729 94877763 -29198409 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1308 1801 190 111 18 chr9 94877763 94878034 -29198138 + MTD LTR MaLR 136 418 -1 4 1308 463 243 0 51 chr9 94878115 94878232 -29197940 - PB1D9 SINE Alu -1 119 9 5 1308 258 276 33 33 chr9 94878237 94878327 -29197845 - Charlie1b DNA MER1_type -2 521 432 5 1308 287 298 137 0 chr9 94878351 94878475 -29197697 + MER63B DNA AcHobo 285 425 -11 5 1308 497 243 222 25 chr9 94878495 94878832 -29197340 - Charlie1b DNA MER1_type -94 429 30 5 1308 506 282 16 33 chr9 94878846 94878967 -29197205 - RSINE1 SINE B4 -22 143 25 5 1308 1149 82 0 0 chr9 94880171 94880329 -29195843 + (TCCCC)n Simple_repeat Simple_repeat 4 161 0 5 1308 435 137 0 0 chr9 94880329 94880402 -29195770 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1308 405 0 0 0 chr9 94881752 94881797 -29194375 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1308 199 320 39 26 chr9 94883599 94883676 -29192496 + MIRb SINE MIR 98 175 -93 5 1308 3477 62 58 2 chr9 94884374 94884977 -29191195 - L1_Mus1 LINE L1 -526 6041 5395 5 1308 4412 54 0 0 chr9 94884977 94885481 -29190691 + L1_Mus1 LINE L1 6064 6567 0 5 1308 488 240 0 31 chr9 94885481 94885495 -29190677 - L1P5 LINE L1 -733 5423 5413 5 1308 1574 290 67 48 chr9 94886297 94886866 -29189306 + Lx8 LINE L1 6678 7257 -216 5 1308 270 0 0 0 chr9 94886866 94886896 -29189276 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1308 221 200 18 18 chr9 94887087 94887102 -29189070 + polypurine Low_complexity Low_complexity 1 15 0 5 1308 1082 128 0 11 chr9 94887102 94887284 -29188888 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 1308 221 200 18 18 chr9 94887284 94887324 -29188848 + polypurine Low_complexity Low_complexity 16 55 0 5 1308 208 325 25 11 chr9 94888022 94888118 -29188054 + L2a LINE L2 3256 3405 -21 5 1308 464 310 75 5 chr9 94888255 94888443 -29187729 + L1MEd LINE L1 473 673 -5463 5 1308 1170 204 0 0 chr9 94888716 94888917 -29187255 + B3 SINE B2 1 201 -15 5 1308 218 243 0 26 chr9 94889014 94889090 -29187082 + A-rich Low_complexity Low_complexity 3 76 0 5 1308 427 269 93 31 chr9 94889204 94889430 -29186742 - L1ME3A LINE L1 -2 6171 5932 5 1308 316 354 106 27 chr9 94889430 94889723 -29186449 + L1MEd LINE L1 4990 5305 -841 5 1308 235 237 62 78 chr9 94889723 94889851 -29186321 + L1MD LINE L1 5311 5436 -923 5 1308 406 309 58 13 chr9 94889872 94890026 -29186146 + MIR SINE MIR 3 163 -99 5 1308 236 235 64 101 chr9 94890214 94890323 -29185849 - MLT1A1 LTR MaLR -303 105 1 5 1308 185 264 19 0 chr9 94890327 94890380 -29185792 + MIR SINE MIR 163 216 -46 5 1308 543 326 142 39 chr9 94890406 94890744 -29185428 - MLT1A LTR MaLR 0 374 2 5 1308 21 0 0 0 chr9 94890788 94890809 -29185363 + AT_rich Low_complexity Low_complexity 1 21 0 5 1308 1067 81 3 41 chr9 94891096 94891435 -29184737 + (TCTCCC)n Simple_repeat Simple_repeat 1 325 0 5 1308 278 341 39 66 chr9 94891616 94891798 -29184374 + L2a LINE L2 3033 3209 -217 5 1308 27 0 0 0 chr9 94892108 94892135 -29184037 + AT_rich Low_complexity Low_complexity 1 27 0 5 1308 21 36 0 0 chr9 94894812 94894840 -29181332 + AT_rich Low_complexity Low_complexity 1 28 0 5 1308 430 320 60 20 chr9 94894901 94895299 -29180873 + L1M5 LINE L1 3003 3416 -2730 5 1308 1466 222 88 23 chr9 94895510 94895861 -29180311 - MTE2b LTR MaLR 0 379 6 5 1308 453 116 0 0 chr9 94896044 94896113 -29180059 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1309 2040 212 166 34 chr9 94896130 94896713 -29179459 - Lx7 LINE L1 -8 7688 7029 5 1309 581 182 18 18 chr9 94896714 94896826 -29179346 - URR1B DNA MER1_type -113 112 1 5 1309 259 273 30 0 chr9 94897424 94897523 -29178649 - Tigger13a DNA MER2_type -56 715 614 5 1309 363 365 50 101 chr9 94897535 94897913 -29178259 - ORR1E LTR MaLR 0 359 1 5 1309 525 337 79 18 chr9 94897951 94898229 -29177943 - Tigger13a DNA MER2_type -201 570 276 5 1309 902 282 15 62 chr9 94898302 94898574 -29177598 + B4 SINE B4 16 274 -18 5 1309 253 248 95 62 chr9 94900621 94900766 -29175406 + MLT1A1 LTR MaLR 4 140 -225 5 1309 225 320 17 174 chr9 94900786 94900964 -29175208 + MLT1A1 LTR MaLR 222 371 -19 5 1309 386 277 137 11 chr9 94901030 94901220 -29174952 + L1MC1 LINE L1 6102 6315 -18 5 1309 231 88 0 0 chr9 94901607 94901641 -29174531 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1309 1593 183 96 17 chr9 94901961 94902114 -29174058 + ORR1D1 LTR MaLR 3 161 -213 5 1309 633 14 0 0 chr9 94902114 94902188 -29173984 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1309 1593 183 96 17 chr9 94902188 94902379 -29173793 + ORR1D1 LTR MaLR 162 374 0 5 1309 3105 233 86 40 chr9 94903310 94904079 -29172093 + RCHARR1 DNA MER1_type 3 834 -140 5 1309 4556 113 57 12 chr9 94904079 94904814 -29171358 - Lx LINE L1 0 6654 5887 5 1309 3105 233 86 40 chr9 94904814 94904971 -29171201 + RCHARR1 DNA MER1_type 835 972 -2 5 1309 190 179 125 0 chr9 94904973 94905029 -29171143 - L2 LINE L2 -3038 381 319 5 1309 200 161 88 18 chr9 94905526 94905583 -29170589 + MIR SINE MIR 113 173 -89 5 1309 497 302 55 30 chr9 94906184 94906348 -29169824 + B4 SINE B4 125 292 0 5 1309 378 170 0 0 chr9 94906348 94906442 -29169730 + GA-rich Low_complexity Low_complexity 1 94 0 5 1309 1347 222 123 27 chr9 94906600 94906966 -29169206 + MTD LTR MaLR 19 419 0 5 1309 1986 162 33 6 chr9 94906971 94907301 -29168871 + ORR1B1 LTR MaLR 1 339 -55 5 1309 5405 191 82 6 chr9 94907313 94908538 -29167634 - Lx2B LINE L1 -6 6994 5677 5 1309 893 138 0 25 chr9 94908536 94908699 -29167473 + L1_Mur2 LINE L1 3929 4087 -1790 5 1309 4804 135 8 22 chr9 94908699 94909571 -29166601 + L1_Mur2 LINE L1 4381 5240 -637 5 1309 491 113 0 0 chr9 94909571 94909642 -29166530 + ORR1B1 LTR MaLR 324 394 0 5 1309 23 0 0 0 chr9 94909744 94909767 -29166405 + AT_rich Low_complexity Low_complexity 1 23 0 5 1309 21 0 0 0 chr9 94909776 94909797 -29166375 + AT_rich Low_complexity Low_complexity 1 21 0 5 1309 317 358 32 11 chr9 94910795 94911080 -29165092 + L1M5 LINE L1 5454 5744 -380 5 1309 1081 124 10 42 chr9 94911400 94911593 -29164579 + Lx LINE L1 6454 6640 -14 5 1309 267 31 0 0 chr9 94911595 94911627 -29164545 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1309 321 344 21 0 chr9 94911639 94911732 -29164440 - MTEa LTR MaLR -279 100 6 5 1309 1106 96 0 6 chr9 94911872 94912039 -29164133 + (GAA)n Simple_repeat Simple_repeat 2 167 0 5 1309 414 0 0 0 chr9 94912039 94912085 -29164087 + (CGA)n Simple_repeat Simple_repeat 1 46 0 5 1309 621 0 0 0 chr9 94912085 94912154 -29164018 + (GAA)n Simple_repeat Simple_repeat 1 69 0 5 1309 432 326 20 39 chr9 94912154 94912307 -29163865 + MTEa LTR MaLR 178 327 -52 5 1309 466 143 11 11 chr9 94912314 94912406 -29163766 + GA-rich Low_complexity Low_complexity 2 93 0 5 1309 255 125 0 0 chr9 94912709 94912749 -29163423 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 1309 1884 223 72 39 chr9 94913278 94913795 -29162377 - RMER5 LTR ERV1 0 534 1 5 1309 3089 70 5 0 chr9 94913836 94914234 -29161938 - MTB LTR MaLR 0 400 1 5 1309 381 275 292 38 chr9 94914243 94914610 -29161562 + L1M5 LINE L1 3105 3564 -2582 5 1309 1798 198 84 18 chr9 94914828 94915208 -29160964 + MTD LTR MaLR 1 405 -14 5 1309 262 348 7 15 chr9 94915310 94915447 -29160725 + L1M5 LINE L1 4035 4170 -1976 5 1309 229 260 140 28 chr9 94915754 94915968 -29160204 + L1M5 LINE L1 4471 4708 -1438 5 1309 303 294 118 0 chr9 94915970 94916055 -29160117 + L1M5 LINE L1 5491 5585 -588 5 1309 467 359 62 22 chr9 94917523 94917799 -29158373 + MLT1A0 LTR MaLR 77 363 -2 5 1309 354 61 0 0 chr9 94918709 94918758 -29157414 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1309 546 158 18 0 chr9 94918776 94918940 -29157232 + CT-rich Low_complexity Low_complexity 2 168 0 5 1309 1126 73 0 11 chr9 94918941 94919122 -29157050 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1309 901 246 10 10 chr9 94919788 94919874 -29156298 + B4 SINE B4 3 88 -204 5 1309 287 292 12 111 chr9 94919874 94920036 -29156136 + B1_Mur4 SINE Alu 4 149 -1 5 1309 1020 14 57 0 chr9 94921595 94921736 -29154436 - L1Md_A LINE L1 -6421 303 155 5 1309 12160 19 0 0 chr9 94921728 94923223 -29152949 + L1_Mm LINE L1 3107 4601 -1282 5 1309 483 18 0 0 chr9 94923291 94923347 -29152825 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 5 1309 211 0 88 0 chr9 94923582 94923616 -29152556 + (TTTTA)n Simple_repeat Simple_repeat 5 41 0 5 1309 955 263 0 11 chr9 94923616 94923804 -29152368 - B3 SINE B2 -18 198 13 5 1309 297 0 0 0 chr9 94924412 94924445 -29151727 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 5 1309 2735 291 82 38 chr9 94924537 94925731 -29150441 - Lx8 LINE L1 -11 7462 6216 5 1309 1579 273 70 23 chr9 94926289 94927063 -29149109 - L1MB2 LINE L1 0 6416 5590 5 1309 744 264 68 18 chr9 94927229 94927568 -29148604 - L1MB2 LINE L1 -964 5418 5063 5 1309 594 255 98 54 chr9 94927674 94927877 -29148295 - B4 SINE B4 0 292 81 5 1309 203 0 0 111 chr9 94927879 94927915 -29148257 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1309 1137 71 0 0 chr9 94927924 94928065 -29148107 - B1_Mus1 SINE Alu -7 141 1 5 1309 582 15 0 0 chr9 94928156 94928223 -29147949 + (TTTTG)n Simple_repeat Simple_repeat 5 71 0 5 1309 1482 270 93 100 chr9 94928255 94929083 -29147089 - L1MB2 LINE L1 -1439 4937 4117 5 1309 455 0 18 0 chr9 94929083 94929138 -29147034 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1309 1482 270 93 100 chr9 94929138 94930142 -29146030 - L1MB2 LINE L1 -2260 4116 3119 5 1309 584 267 39 33 chr9 94930151 94930333 -29145839 - B3A SINE B2 -15 183 1 5 1309 1172 280 175 54 chr9 94930535 94930906 -29145266 - L1MB2 LINE L1 -4961 1423 986 5 1309 1342 229 87 14 chr9 94930906 94931251 -29144921 + ORR1D2 LTR MaLR 1 370 0 5 1309 1172 280 175 54 chr9 94931251 94931462 -29144710 - L1MB2 LINE L1 -5399 985 740 5 1309 1894 130 9 72 chr9 94931462 94931811 -29144361 + ORR1A4 LTR MaLR 1 327 -2 5 1309 1172 280 175 54 chr9 94931811 94932277 -29143895 - L1MB2 LINE L1 -5645 739 247 5 1309 1586 256 58 12 chr9 94932302 94932701 -29143471 - MTD LTR MaLR 0 419 3 5 1309 453 271 33 7 chr9 94932746 94932898 -29143274 - L1MB2 LINE L1 -6206 178 23 5 1309 1754 200 153 35 chr9 94933277 94933812 -29142360 - L1_Mur3 LINE L1 -7075 637 40 5 1309 777 301 0 5 chr9 94934328 94934512 -29141660 + B3 SINE B2 1 183 -33 5 1309 336 24 0 0 chr9 94934572 94934613 -29141559 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1309 21 36 0 0 chr9 94935193 94935221 -29140951 + AT_rich Low_complexity Low_complexity 1 28 0 5 1309 390 348 38 40 chr9 94936024 94936259 -29139913 - ORR1E LTR MaLR -136 234 1 5 1309 1131 228 42 137 chr9 94936467 94936869 -29139303 + MTE2a LTR MaLR 16 379 0 5 1309 677 233 128 0 chr9 94939315 94939495 -29136677 + B3 SINE B2 3 205 -11 5 1309 8977 128 25 5 chr9 94939557 94940990 -29135182 - Lx4A LINE L1 0 7058 5597 5 1309 2464 83 0 3 chr9 94940988 94941340 -29134832 - Lx4A LINE L1 -582 5295 4945 5 1309 180 152 0 0 chr9 94941402 94941435 -29134737 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 5 1309 258 32 0 0 chr9 94942585 94942616 -29133556 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 6 1309 293 250 133 48 chr9 94942628 94942733 -29133439 - B1F SINE Alu -20 129 16 6 1309 1549 191 140 13 chr9 94942860 94943232 -29132940 + MTD LTR MaLR 1 419 0 6 1309 742 176 46 0 chr9 94943310 94943441 -29132731 + B1_Mur2 SINE Alu 5 141 -8 6 1309 478 229 41 163 chr9 94943633 94943878 -29132294 - MER20 DNA MER1_type -3 216 2 6 1309 231 36 0 0 chr9 94944941 94944969 -29131203 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 6 1309 329 62 21 0 chr9 94944987 94945035 -29131137 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 6 1309 223 339 93 36 chr9 94945598 94945846 -29130326 + L2 LINE L2 2736 2997 -422 6 1309 2697 126 41 2 chr9 94946903 94947317 -29128855 - L1_Mm LINE L1 -182 5701 5272 6 1309 948 261 0 9 chr9 94947357 94947574 -29128598 + B3 SINE B2 1 215 -1 6 1309 202 328 0 0 chr9 94947813 94947877 -29128295 - L2a LINE L2 0 3426 3363 6 1309 3713 57 0 13 chr9 94948271 94948747 -29127425 - L1Md_F3 LINE L1 0 6584 6115 6 1309 2639 65 17 9 chr9 94948746 94949090 -29127082 - L1Md_F2 LINE L1 -12 6570 6224 6 1309 1041 303 153 31 chr9 94949136 94949251 -29126921 - Lx8 LINE L1 -4 7469 7330 6 1309 345 24 0 0 chr9 94949251 94949293 -29126879 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1309 1041 303 153 31 chr9 94949293 94949889 -29126283 - Lx8 LINE L1 -144 7329 6672 6 1309 601 343 24 5 chr9 94949898 94950109 -29126063 - Lx8 LINE L1 -1061 6412 6198 6 1309 869 222 18 70 chr9 94950121 94950349 -29125823 + B3 SINE B2 1 216 0 6 1309 357 24 0 0 chr9 94950366 94950408 -29125764 + (TATG)n Simple_repeat Simple_repeat 2 43 0 6 1309 243 338 15 22 chr9 94950438 94950574 -29125598 - Lx8 LINE L1 -337 7136 7002 6 1309 229 202 7 150 chr9 94950567 94950707 -29125465 - Lx9 LINE L1 -1339 6305 6186 6 1309 289 272 47 28 chr9 94952154 94952260 -29123912 - PB1D10 SINE Alu 0 117 10 6 1309 415 252 35 69 chr9 94953524 94953669 -29122503 + RMER15 LTR ERVL 422 561 -14 6 1309 440 285 59 37 chr9 94954190 94954460 -29121712 + L1MD1 LINE L1 4604 4879 -1267 6 1309 1559 292 111 26 chr9 94954503 94955462 -29120710 + L1MD1 LINE L1 4943 5991 -251 6 1309 396 0 0 0 chr9 94955462 94955506 -29120666 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1309 1559 290 104 31 chr9 94955506 94955725 -29120447 + L1MD1 LINE L1 5992 6227 -15 6 1309 187 250 19 19 chr9 94956280 94956333 -29119839 - L2c LINE L2 -60 3327 3275 6 1309 195 279 49 0 chr9 94959317 94959378 -29116794 + MIR SINE MIR 106 169 -93 6 1309 396 0 0 0 chr9 94960024 94960068 -29116104 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 1309 234 0 0 0 chr9 94960117 94960143 -29116029 + (TA)n Simple_repeat Simple_repeat 1 26 0 6 1309 216 0 0 0 chr9 94960314 94960338 -29115834 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1309 235 245 29 54 chr9 94960419 94960548 -29115624 + MIR SINE MIR 105 228 -34 6 1309 396 229 152 2 chr9 94961692 94961867 -29114305 + L1MA4 LINE L1 5718 5927 -370 6 1309 293 82 20 0 chr9 94961873 94961922 -29114250 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1309 275 236 0 27 chr9 94962311 94962385 -29113787 + GA-rich Low_complexity Low_complexity 3 74 0 6 1309 235 189 0 0 chr9 94962466 94962503 -29113669 + L1MEf LINE L1 775 811 -5389 6 1309 554 288 98 68 chr9 94962770 94963267 -29112905 + L1MD2 LINE L1 738 1251 -5389 6 1309 348 189 0 0 chr9 94963280 94963354 -29112818 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1309 1666 146 78 12 chr9 94963475 94963795 -29112377 - RMER6C LTR ERVK -349 341 1 6 1309 281 326 113 48 chr9 94963868 94964309 -29111863 + L1MD2 LINE L1 2519 2988 -3556 6 1309 2201 144 0 0 chr9 94964379 94964705 -29111467 - ORR1A3 LTR MaLR 0 326 1 6 1309 246 249 233 33 chr9 94965075 94965465 -29110707 - L1MC5 LINE L1 -201 7760 7293 6 1309 768 314 31 12 chr9 94965792 94966050 -29110122 - B4 SINE B4 -2 290 28 6 1309 228 67 0 0 chr9 94966198 94966228 -29109944 + (TTG)n Simple_repeat Simple_repeat 2 31 0 6 1309 370 282 77 77 chr9 94966282 94966382 -29109790 - ID_B1 SINE B4 -55 169 1 6 1309 383 174 0 0 chr9 94966382 94966451 -29109721 - ID4 SINE ID -14 69 1 6 1309 474 18 0 0 chr9 94967413 94967468 -29108704 + (TCC)n Simple_repeat Simple_repeat 3 57 0 6 1309 735 236 93 10 chr9 94968232 94968425 -29107747 - B3 SINE B2 -3 213 5 6 1309 283 252 39 48 chr9 94968915 94969019 -29107153 + MTEa LTR MaLR 1 103 -276 6 1309 1548 200 103 5 chr9 94969007 94969374 -29106798 + MTD LTR MaLR 17 419 0 6 1309 903 280 71 17 chr9 94969374 94969668 -29106504 + MTEa LTR MaLR 66 375 -4 6 1309 1979 128 92 35 chr9 94970080 94970427 -29105745 - ORR1B2 LTR MaLR 0 367 1 6 1309 184 253 72 62 chr9 94971407 94971504 -29104668 + MIRm SINE MIR 157 254 -22 6 1309 399 348 80 6 chr9 94971517 94971844 -29104328 + L2 LINE L2 1368 1718 -1701 6 1309 264 59 0 0 chr9 94972127 94972161 -29104011 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1309 258 32 0 0 chr9 94972161 94972192 -29103980 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1309 490 270 177 45 chr9 94972232 94972430 -29103742 - B4A SINE B4 -68 224 1 6 1309 218 149 0 24 chr9 94975038 94975091 -29101081 + MIRc SINE MIR 113 164 -98 6 1309 210 128 0 0 chr9 94976899 94976938 -29099234 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 6 1309 270 0 0 0 chr9 94977743 94977773 -29098399 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 1309 220 327 78 83 chr9 94980188 94980309 -29095863 - ID_B1 SINE B4 -39 185 7 6 1309 271 186 119 0 chr9 94980309 94980368 -29095804 - ID4_ SINE ID -11 72 7 6 1309 194 0 39 0 chr9 94982287 94982313 -29093859 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 1309 627 14 0 0 chr9 94982641 94982713 -29093459 + (GGAGA)n Simple_repeat Simple_repeat 3 74 0 6 1309 201 196 0 0 chr9 94983688 94983744 -29092428 + GA-rich Low_complexity Low_complexity 2 57 0 6 1309 21 36 0 0 chr9 94986267 94986295 -29089877 + AT_rich Low_complexity Low_complexity 1 28 0 6 1309 221 309 85 0 chr9 94987488 94987582 -29088590 - MIR SINE MIR -49 213 112 6 1309 734 258 107 35 chr9 94987858 94988196 -29087976 - L1MC4 LINE L1 -407 7635 7274 6 1309 554 310 75 37 chr9 94988199 94988521 -29087651 - L1MC4 LINE L1 -960 7082 6749 6 1309 246 179 54 0 chr9 94988640 94988696 -29087476 - L1MC4 LINE L1 -1482 6560 6502 6 1309 252 261 108 75 chr9 94988835 94988955 -29087217 + MIRc SINE MIR 78 201 -67 6 1309 253 333 0 34 chr9 94989371 94989489 -29086683 - MIRb SINE MIR -72 196 83 6 1309 358 311 76 60 chr9 94991707 94992022 -29084150 - MLT1B LTR MaLR -12 378 59 6 1309 448 185 9 9 chr9 94992086 94992195 -29083977 + CT-rich Low_complexity Low_complexity 3 111 0 6 1309 288 322 0 16 chr9 94992506 94992629 -29083543 + (CATATA)n Simple_repeat Simple_repeat 2 122 0 6 1309 461 297 57 57 chr9 94993216 94993576 -29082596 + ORR1E LTR MaLR 2 367 -12 6 1309 279 0 0 0 chr9 94993587 94993618 -29082554 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1309 3652 48 32 7 chr9 94994208 94994385 -29081787 - MT2C_Mm LTR ERVL 0 475 300 6 1309 306 0 0 0 chr9 94994385 94994419 -29081753 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1309 3652 48 32 7 chr9 94994419 94994704 -29081468 - MT2C_Mm LTR ERVL -176 299 2 6 1309 305 302 128 78 chr9 94996171 94996390 -29079782 - ORR1E LTR MaLR -124 235 6 6 1309 666 68 0 0 chr9 94997929 94998017 -29078155 + (TTC)n Simple_repeat Simple_repeat 2 89 0 6 1309 519 31 0 0 chr9 94998466 94998531 -29077641 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1309 3858 261 71 26 chr9 94998535 94999100 -29077072 - Lx8 LINE L1 -146 7327 6740 6 1309 1015 146 172 0 chr9 94999100 94999292 -29076880 - URR1A DNA MER1_type -1 225 1 6 1309 3858 261 71 26 chr9 94999292 94999866 -29076306 - Lx8 LINE L1 -734 6739 6137 6 1309 564 309 94 26 chr9 95000191 95000376 -29075796 + MLT1A LTR MaLR 29 236 -138 1 1309 348 24 0 0 chr9 95000376 95000417 -29075755 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1309 564 309 94 26 chr9 95000417 95000540 -29075632 + MLT1A LTR MaLR 237 357 -17 1 1309 868 159 21 0 chr9 95000823 95000968 -29075204 + B1_Mur3 SINE Alu 1 148 -1 3 1309 876 302 68 42 chr9 95001262 95001645 -29074527 + MLT1A1 LTR MaLR 2 394 -14 4 1309 252 318 81 71 chr9 95002140 95002435 -29073737 - L3 LINE CR1 -2089 2400 2103 5 1309 529 209 50 43 chr9 95002509 95002649 -29073523 + B1F1 SINE Alu 1 141 -8 6 1309 342 98 0 0 chr9 95002653 95002704 -29073468 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1309 1885 288 80 34 chr9 95003328 95004705 -29071467 - Looper DNA PiggyBac -34 1524 20 8 1309 582 268 105 134 chr9 95005123 95005625 -29070547 - L1MA4 LINE L1 -382 5918 5457 9 1309 358 219 14 0 chr9 95006890 95006963 -29069209 + MTD LTR MaLR 45 118 -301 1 1309 2457 300 55 130 chr9 95007029 95007677 -29068495 - L1_Mur3 LINE L1 -661 5519 4814 1 1309 1073 103 0 0 chr9 95007677 95007823 -29068349 + B1_Mus2 SINE Alu 2 147 0 1 1309 2457 300 57 134 chr9 95007823 95008217 -29067955 - L1_Mur3 LINE L1 -1067 4813 4445 1 1309 271 323 0 80 chr9 95008217 95008355 -29067817 - RSINE1 SINE B4 -36 129 3 1 1309 2457 300 57 134 chr9 95008355 95008893 -29067279 - L1_Mur3 LINE L1 -1067 4444 3940 1 1309 760 254 44 24 chr9 95008893 95009099 -29067073 - B3 SINE B2 -6 210 1 1 1309 2457 300 57 134 chr9 95009099 95009313 -29066859 - L1_Mur3 LINE L1 -1941 3939 3738 1 1309 789 261 24 14 chr9 95009313 95009523 -29066649 - B3 SINE B2 -4 212 1 1 1309 2457 300 57 134 chr9 95009523 95010043 -29066129 - L1_Mur3 LINE L1 -2143 3737 3222 1 1309 606 78 0 60 chr9 95010045 95010195 -29065977 + (TCTCCC)n Simple_repeat Simple_repeat 5 145 0 1 1309 285 269 19 57 chr9 95010197 95010355 -29065817 - L1M2 LINE L1 -2894 3249 3098 1 1309 286 295 27 62 chr9 95010401 95010513 -29065659 - LTR33 LTR ERVL -332 183 76 1 1309 260 312 21 0 chr9 95011019 95011112 -29065060 + Kanga1 DNA Tc2 1646 1740 -5 1 1309 279 0 0 0 chr9 95014641 95014672 -29061500 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1309 1303 222 110 25 chr9 95016457 95016822 -29059350 + MTD LTR MaLR 10 405 -14 2 1309 181 250 23 0 chr9 95016864 95016908 -29059264 - MIRc SINE MIR -115 153 109 2 1309 383 317 24 32 chr9 95016937 95017061 -29059111 + RSINE1 SINE B4 22 144 -21 2 1309 279 54 0 0 chr9 95017249 95017286 -29058886 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 2 1309 24 0 0 0 chr9 95017345 95017369 -29058803 + AT_rich Low_complexity Low_complexity 1 24 0 2 1309 22 35 0 0 chr9 95018444 95018473 -29057699 + AT_rich Low_complexity Low_complexity 1 29 0 2 1309 686 176 80 0 chr9 95018688 95018813 -29057359 - B1_Mur4 SINE Alu -15 135 1 2 1309 252 304 171 9 chr9 95018822 95019038 -29057134 - MIR SINE MIR -10 252 2 2 1309 207 192 68 0 chr9 95021249 95021322 -29054850 + CT-rich Low_complexity Low_complexity 3 80 0 2 1309 871 325 205 19 chr9 95021851 95022733 -29053439 + Arthur1B DNA Tip100 40 1085 -140 3 1309 678 172 0 0 chr9 95022795 95022923 -29053249 + (CA)n Simple_repeat Simple_repeat 2 129 0 3 1309 993 280 7 27 chr9 95025013 95025310 -29050862 + B4A SINE B4 2 292 0 3 1309 420 20 0 0 chr9 95025322 95025371 -29050801 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1309 416 311 96 10 chr9 95026699 95026897 -29049275 - MIR SINE MIR -18 244 30 3 163 220 289 141 44 chr9 95027048 95027367 -29048805 - L2b LINE L2 -158 3268 2919 3 1310 402 354 58 12 chr9 95029350 95029590 -29046582 - MLT1H LTR MaLR -298 251 1 3 1310 400 300 107 0 chr9 95029810 95029960 -29046212 + ID_B1 SINE B4 7 172 -52 3 1310 617 294 146 9 chr9 95029986 95030219 -29045953 + B4A SINE B4 28 292 0 3 1310 298 56 0 0 chr9 95030405 95030441 -29045731 - L1_Mus2 LINE L1 -192 6374 6339 3 1310 1704 196 147 3 chr9 95030533 95030901 -29045271 + MTC LTR MaLR 1 421 0 4 1310 207 0 0 0 chr9 95030947 95030970 -29045202 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1310 264 283 85 21 chr9 95030980 95031121 -29045051 - L1M4 LINE L1 -4833 1709 1560 4 1310 794 84 17 0 chr9 95031375 95031494 -29044678 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 4 1310 266 292 0 0 chr9 95031579 95031651 -29044521 - L1M4 LINE L1 -5354 1188 1117 4 1310 2210 117 3 58 chr9 95031802 95032148 -29044024 - ORR1A2 LTR MaLR 0 327 1 4 1310 1077 323 82 35 chr9 95032742 95033232 -29042940 - MLT1F1 LTR MaLR -47 522 10 4 1310 288 140 69 17 chr9 95035619 95035677 -29040495 + PB1D7 SINE Alu 23 83 -37 4 1310 597 203 7 55 chr9 95036736 95036882 -29039290 + B1_Mur2 SINE Alu 9 147 -2 4 1310 829 92 8 0 chr9 95037772 95037902 -29038270 + B2_Mm1t SINE B2 55 185 -8 4 1310 1090 78 6 11 chr9 95040726 95040907 -29035265 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1310 402 245 66 0 chr9 95040949 95041055 -29035117 - B1F SINE Alu -8 141 29 5 1310 276 311 27 0 chr9 95041059 95041133 -29035039 + ID4 SINE ID 5 80 -3 5 1310 818 305 70 13 chr9 95041245 95041544 -29034628 - MLT2C1 LTR ERVL -41 356 41 5 1310 274 311 123 57 chr9 95042888 95043099 -29033073 + L2a LINE L2 3189 3413 -13 5 1310 269 51 26 0 chr9 95043099 95043138 -29033034 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 5 1310 192 40 0 0 chr9 95043450 95043475 -29032697 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1310 881 212 205 33 chr9 95044294 95044567 -29031605 + ORR1C1 LTR MaLR 59 378 0 5 1310 545 144 46 16 chr9 95048380 95048494 -29027678 + B1_Mur2 SINE Alu 7 115 -5 5 1310 372 312 20 20 chr9 95048775 95048922 -29027250 - MLT1A0 LTR MaLR -191 174 28 5 1310 25 51 0 0 chr9 95050480 95050519 -29025653 + AT_rich Low_complexity Low_complexity 1 39 0 5 1310 191 42 104 0 chr9 95051049 95051097 -29025075 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 6 1310 303 254 119 65 chr9 95052405 95052548 -29023624 + MIRb SINE MIR 20 175 -93 6 1310 429 109 0 0 chr9 95052889 95052953 -29023219 + (GGGA)n Simple_repeat Simple_repeat 4 67 0 6 1310 191 328 55 75 chr9 95056211 95056412 -29019760 + L2 LINE L2 1989 2185 -1234 6 1310 297 0 0 0 chr9 95056459 95056492 -29019680 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1310 271 276 0 0 chr9 95056523 95056581 -29019591 - RSINE1 SINE B4 -99 66 9 6 1310 225 132 0 0 chr9 95057144 95057182 -29018990 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1310 923 157 168 0 chr9 95058038 95058229 -29017943 - URR1B DNA MER1_type -2 223 1 6 1310 342 364 19 13 chr9 95059781 95059937 -29016235 + Arthur1A DNA Tip100 1 157 -20 6 1310 235 232 0 35 chr9 95063092 95063150 -29013022 + CT-rich Low_complexity Low_complexity 6 61 0 6 1310 675 222 4 0 chr9 95063477 95063750 -29012422 + (CA)n Simple_repeat Simple_repeat 1 274 0 7 1310 1127 182 26 35 chr9 95064330 95064558 -29011614 + URR1A DNA MER1_type 1 226 0 7 1310 1532 304 100 33 chr9 95064644 95065907 -29010265 - L1M4 LINE L1 -762 5418 4072 7 1310 190 298 86 26 chr9 95067637 95067754 -29008418 + MIR SINE MIR 84 207 -55 7 1310 222 171 26 79 chr9 95067756 95067870 -29008302 + (TATAA)n Simple_repeat Simple_repeat 2 109 0 7 1310 193 319 68 14 chr9 95068156 95068229 -29007943 + MER5A DNA MER1_type 113 189 0 7 1310 185 330 45 36 chr9 95068622 95068732 -29007440 + L2c LINE L2 3034 3144 -243 7 1310 189 288 14 43 chr9 95068982 95069051 -29007121 + L2c LINE L2 3315 3381 -6 7 1310 228 264 64 75 chr9 95069582 95069676 -29006496 + RMER19B LTR ERVK 734 826 -76 7 1310 210 231 0 0 chr9 95071063 95071102 -29005070 + polypyrimidine Low_complexity Low_complexity 6 44 0 7 1310 232 341 72 39 chr9 95072331 95072511 -29003661 - L2c LINE L2 -7 3380 3195 7 1310 322 348 135 32 chr9 95072544 95072848 -29003324 - L2c LINE L2 -314 3112 2777 7 1310 927 132 0 0 chr9 95073102 95073276 -29002896 + (TG)n Simple_repeat Simple_repeat 1 174 0 8 1310 233 288 0 121 chr9 95073276 95073291 -29002881 + ORR1E LTR MaLR 5 55 -324 8 1310 320 257 14 0 chr9 95073291 95073361 -29002811 + MLT2B3 LTR ERVL 20 90 -464 8 1310 261 253 36 48 chr9 95073436 95073519 -29002653 + ORR1E LTR MaLR 80 161 -198 8 1310 978 312 92 65 chr9 95073615 95074260 -29001912 - RMER13A LTR ERVK -197 663 2 8 1310 522 103 0 0 chr9 95074300 95074387 -29001785 + (TC)n Simple_repeat Simple_repeat 2 88 0 8 1310 250 284 10 83 chr9 95074518 95074614 -29001558 + ORR1E LTR MaLR 278 366 -13 8 1310 180 0 0 0 chr9 95074651 95074671 -29001501 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 8 1310 244 236 0 18 chr9 95074698 95074754 -29001418 - RMER5 LTR ERV1 -39 495 441 8 1310 318 237 0 0 chr9 95075603 95075700 -29000472 + GA-rich Low_complexity Low_complexity 1 97 0 8 1310 974 240 99 87 chr9 95075798 95076166 -29000006 - MLT2B4 LTR ERVL -167 387 3 8 1310 394 292 164 51 chr9 95076956 95077007 -28999165 - MLT1C LTR MaLR -1 466 422 8 1310 2576 153 107 2 chr9 95077007 95077485 -28998687 + RLTR11A LTR ERVK 1 528 0 9 1310 394 292 164 51 chr9 95077485 95077689 -28998483 - MLT1C LTR MaLR -46 421 182 8 1310 198 339 96 32 chr9 95078802 95078927 -28997245 + MIRc SINE MIR 37 169 -99 9 1310 2072 185 32 3 chr9 95079118 95079487 -28996685 - RLTR14 LTR ERV1 0 382 3 9 1310 198 277 48 0 chr9 95079761 95079844 -28996328 - L2 LINE L2 -1880 1539 1453 9 1310 187 294 54 81 chr9 95082454 95082602 -28993570 - L2c LINE L2 -2 3385 3242 9 1310 958 110 174 25 chr9 95083019 95083215 -28992957 + URR1B DNA MER1_type 1 225 0 9 1310 182 317 9 80 chr9 95084840 95084953 -28991219 - L2 LINE L2 -2771 648 544 9 1310 289 295 81 80 chr9 95085222 95085404 -28990768 + MIRc SINE MIR 15 193 -69 9 1310 263 256 24 60 chr9 95085812 95085895 -28990277 - ID SINE ID -142 82 3 9 1310 295 307 117 8 chr9 95085911 95086039 -28990133 - B1F SINE Alu -7 142 1 9 1310 1179 203 0 9 chr9 95086069 95086283 -28989889 + B3 SINE B2 1 212 -4 1 1310 180 0 0 0 chr9 95086917 95086937 -28989235 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 1 1310 202 29 0 54 chr9 95087266 95087303 -28988869 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1310 414 0 0 0 chr9 95088162 95088208 -28987964 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1310 231 328 59 37 chr9 95088354 95088490 -28987682 - MIR3 SINE MIR -24 184 46 1 1310 339 321 132 19 chr9 95088635 95088794 -28987378 + MER45A DNA Tip100 1 177 -1 1 1310 230 329 92 26 chr9 95089351 95089589 -28986583 + MIRb SINE MIR 1 256 -6 1 1310 453 297 120 13 chr9 95089669 95089819 -28986353 - MER63B DNA AcHobo 0 436 271 1 1310 240 309 60 77 chr9 95090137 95090233 -28985939 - L2 LINE L2 -557 2862 2775 1 1310 3536 23 2 0 chr9 95090233 95090628 -28985544 + MTA_Mm LTR MaLR 1 396 0 1 1310 240 309 60 77 chr9 95090628 95090713 -28985459 - L2 LINE L2 -645 2774 2684 1 1310 364 308 0 62 chr9 95090740 95090868 -28985304 - MER2 DNA MER2_type -31 314 195 1 1310 676 258 90 15 chr9 95090917 95091118 -28985054 - MER2 DNA MER2_type -121 224 9 1 1310 277 372 66 50 chr9 95092242 95092423 -28983749 + MIRb SINE MIR 38 221 -47 1 1310 324 0 0 0 chr9 95095325 95095361 -28980811 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1 1310 684 214 8 8 chr9 95095392 95095519 -28980653 - RSINE1 SINE B4 -38 127 1 1 1310 1416 168 13 0 chr9 95095675 95095901 -28980271 - ORR1B1 LTR MaLR -8 386 158 1 1310 1145 138 28 51 chr9 95095888 95096102 -28980070 + URR1B DNA MER1_type 17 225 0 1 1310 189 361 113 16 chr9 95096484 95096608 -28979564 - MIRm SINE MIR -128 148 13 1 1310 388 206 209 22 chr9 95097108 95097247 -28978925 + MER5A1 DNA MER1_type 1 165 -1 1 1310 294 300 40 40 chr9 95097394 95097519 -28978653 - MIRb SINE MIR -64 204 80 1 1310 1106 75 7 7 chr9 95098604 95098751 -28977421 + B1_Mus2 SINE Alu 1 147 0 1 1310 351 326 43 21 chr9 95100219 95100360 -28975812 + ID_B1 SINE B4 80 223 -1 1 1310 422 325 0 17 chr9 95102592 95102711 -28973461 + B1F SINE Alu 12 128 -21 1 1310 3708 64 0 8 chr9 95103132 95103604 -28972568 - L1_Mus3 LINE L1 -515 6123 5656 1 1310 3815 71 6 14 chr9 95103604 95104116 -28972056 + L1_Mus3 LINE L1 6125 6632 -6 1 1310 3844 122 106 18 chr9 95104884 95105507 -28970665 - RLTR33 LTR ERVK 0 678 1 1 1310 416 19 19 0 chr9 95107449 95107502 -28968670 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 1 1310 570 124 0 0 chr9 95110816 95110905 -28965267 + (TCCC)n Simple_repeat Simple_repeat 1 89 0 1 1310 223 231 15 44 chr9 95112304 95112372 -28963800 - L2c LINE L2 -50 3337 3272 1 1310 242 265 88 0 chr9 95114016 95114118 -28962054 + MER112 DNA MER1_type 2 112 -149 1 1310 673 174 1 0 chr9 95114705 95114832 -28961340 + B1_Mur3 SINE Alu 7 134 -15 1 1310 246 338 0 0 chr9 95115148 95115219 -28960953 - RMER15 LTR ERVL -204 371 301 1 1310 378 0 0 0 chr9 95115422 95115464 -28960708 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1310 827 201 55 68 chr9 95115939 95116158 -28960014 - B3 SINE B2 0 216 1 1 1310 197 309 50 20 chr9 95116208 95116307 -28959865 - MIR SINE MIR 0 262 161 1 1310 198 0 0 0 chr9 95116399 95116421 -28959751 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1310 509 220 26 57 chr9 95116445 95116613 -28959559 + MLT1C LTR MaLR 1 167 -223 1 1310 257 277 78 76 chr9 95118397 95118694 -28957478 - MTEb LTR MaLR 0 379 79 1 1310 686 301 67 7 chr9 95119004 95119288 -28956884 + L1MC4 LINE L1 1486 1786 -4429 1 1310 357 353 0 0 chr9 95119662 95119778 -28956394 + MER63A DNA AcHobo 37 152 -58 1 1310 21 0 0 0 chr9 95119804 95119825 -28956347 + AT_rich Low_complexity Low_complexity 1 21 0 1 1310 231 311 84 9 chr9 95119884 95119991 -28956181 + L1MC5 LINE L1 6730 6844 -1151 1 1310 327 212 100 10 chr9 95120039 95120139 -28956033 + B1_Mur2 SINE Alu 41 149 0 1 1310 552 274 93 81 chr9 95120139 95120536 -28955636 + L1MC5 LINE L1 6834 7235 -726 1 1310 211 233 0 0 chr9 95121088 95121131 -28955041 + ID2 SINE ID 26 68 -15 1 1310 416 262 54 72 chr9 95122778 95122889 -28953283 + PB1D7 SINE Alu 1 109 -8 1 1310 403 305 33 7 chr9 95122915 95123067 -28953105 - MLT1B LTR MaLR 0 390 235 1 1310 253 216 20 0 chr9 95124368 95124419 -28951753 + GA-rich Low_complexity Low_complexity 3 54 0 1 1310 327 300 12 0 chr9 95125223 95125303 -28950869 + ID4_ SINE ID 2 82 -1 1 1310 366 23 0 0 chr9 95125521 95125564 -28950608 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1310 234 91 0 0 chr9 95126743 95126776 -28949396 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1 1310 306 194 0 0 chr9 95127103 95127165 -28949007 + CT-rich Low_complexity Low_complexity 4 65 0 1 1310 241 245 0 0 chr9 95127175 95127224 -28948948 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1310 827 264 88 28 chr9 95128825 95129029 -28947143 + B4A SINE B4 10 230 -62 1 1310 558 0 0 0 chr9 95129029 95129091 -28947081 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1310 827 264 88 28 chr9 95129091 95129135 -28947037 + B4A SINE B4 231 273 -19 1 1310 511 207 29 3 chr9 95132666 95132771 -28943401 - B1_Mur4 SINE Alu -7 143 44 1 1310 230 278 50 15 chr9 95132925 95133024 -28943148 - PB1 SINE Alu -4 123 9 1 1310 1993 151 60 11 chr9 95133191 95133559 -28942613 + ORR1B1 LTR MaLR 9 394 0 1 1310 588 14 0 0 chr9 95135271 95135340 -28940832 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1 1310 226 73 0 47 chr9 95135344 95135387 -28940785 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1310 400 319 84 45 chr9 95135702 95135892 -28940280 + ORR1E LTR MaLR 1 190 -169 1 1310 2535 112 50 3 chr9 95135892 95136268 -28939904 - ORR1B1 LTR MaLR 0 394 1 1 1310 400 319 84 45 chr9 95136268 95136412 -28939760 + ORR1E LTR MaLR 191 347 -12 1 1310 703 206 12 0 chr9 95136733 95136903 -28939269 + T-rich Low_complexity Low_complexity 2 173 0 1 1310 915 198 143 16 chr9 95137299 95137550 -28938622 - ORR1D2 LTR MaLR 0 370 88 1 1310 264 59 0 0 chr9 95137961 95137995 -28938177 + (ATG)n Simple_repeat Simple_repeat 2 35 0 1 1310 1799 226 109 25 chr9 95138419 95138933 -28937239 + ERVL-B4-int LTR ERVL 2477 3033 -2681 1 1310 761 285 104 8 chr9 95138961 95139182 -28936990 + MLT1C LTR MaLR 51 301 -166 1 1310 657 25 0 0 chr9 95139182 95139261 -28936911 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 1 1310 761 292 130 11 chr9 95139261 95139401 -28936771 + MLT1C LTR MaLR 302 459 -8 1 1310 617 325 148 12 chr9 95139403 95139742 -28936430 + ERVL-B4-int LTR ERVL 3131 3515 -2246 1 1310 2277 304 58 22 chr9 95139818 95140673 -28935499 + ERVL-B4-int LTR ERVL 3521 4406 -1308 1 1310 949 146 118 15 chr9 95140736 95140931 -28935241 - URR1A DNA MER1_type -11 215 1 1 1310 1129 314 110 25 chr9 95140982 95141616 -28934556 + ERVL-B4-int LTR ERVL 4974 5668 -89 1 1310 2428 155 50 8 chr9 95141616 95142018 -28934154 - MTC LTR MaLR -2 419 1 1 1310 1129 314 110 25 chr9 95142018 95142073 -28934099 + ERVL-B4-int LTR ERVL 5669 5722 -35 1 1310 628 306 28 92 chr9 95142079 95142182 -28933990 + MLT2C1 LTR ERVL 5 100 -297 1 1310 1167 21 35 0 chr9 95142182 95142323 -28933849 + B1_Mm SINE Alu 2 147 0 1 1310 628 306 28 92 chr9 95142323 95142536 -28933636 + MLT2C1 LTR ERVL 101 301 -96 1 1310 229 309 61 10 chr9 95142753 95142851 -28933321 + Tigger14a DNA MER2_type 70 172 -152 1 1310 736 315 148 8 chr9 95144350 95144702 -28931470 + MLT1F LTR MaLR 91 491 -57 1 1310 3414 95 154 45 chr9 95144851 95145402 -28930770 - RMER19C LTR ERVK 0 611 1 1 1310 310 345 53 13 chr9 95145744 95145894 -28930278 - MER5B DNA MER1_type -19 159 4 1 1310 37778 25 3 7 chr9 95146184 95151375 -28924797 + L1Md_A LINE L1 429 5586 -297 1 1310 8470 37 0 2 chr9 95151375 95152373 -28923799 + L1Md_A LINE L1 5587 6582 0 1 1310 2248 120 3 12 chr9 95152771 95153101 -28923071 - ORR1A2 LTR MaLR 0 327 1 1 1310 321 274 114 9 chr9 95153196 95153310 -28922862 - MER5A1 DNA MER1_type -1 165 40 1 1310 424 283 9 0 chr9 95154118 95154224 -28921948 + PB1D10 SINE Alu 4 110 -7 1 1310 1351 245 12 78 chr9 95154351 95154750 -28921422 + MTE2b LTR MaLR 6 378 -1 1 1310 565 311 37 81 chr9 95155822 95156144 -28920028 - Lx8 LINE L1 -29 7444 7137 1 1310 833 310 136 25 chr9 95156378 95156907 -28919265 + Charlie25 DNA MER1_type 1635 2222 -302 1 163 1414 183 107 31 chr9 95158141 95158468 -28917704 - ORR1D1 LTR MaLR -2 372 21 1 1311 874 299 17 48 chr9 95159343 95159635 -28916537 + B4 SINE B4 8 290 -2 1 1311 281 327 56 35 chr9 95160406 95160637 -28915535 - MLT1E2 LTR MaLR 0 505 270 1 1311 315 312 90 28 chr9 95160686 95160864 -28915308 - MLT1E2 LTR MaLR -438 189 1 1 1311 205 313 77 32 chr9 95161680 95161835 -28914337 + MIRb SINE MIR 76 237 -31 1 1311 582 15 0 0 chr9 95162339 95162406 -28913766 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 1 1311 341 315 30 8 chr9 95162477 95162608 -28913564 - MLT1K LTR MaLR -272 323 190 1 1311 499 157 25 0 chr9 95162630 95162751 -28913421 + (CTATG)n Simple_repeat Simple_repeat 5 128 0 1 1311 246 368 0 9 chr9 95163911 95164018 -28912154 + MER5B DNA MER1_type 25 130 -48 1 1311 261 0 0 0 chr9 95164259 95164288 -28911884 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1311 181 227 111 60 chr9 95165559 95165676 -28910496 - L2c LINE L2 -224 3163 3041 1 1311 588 220 144 18 chr9 95165833 95166037 -28910135 - ORR1D1 LTR MaLR -3 371 142 1 1311 817 176 69 11 chr9 95166061 95166250 -28909922 - ORR1D1 LTR MaLR -130 244 45 1 1311 405 0 0 0 chr9 95167708 95167753 -28908419 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1311 284 280 20 10 chr9 95168176 95168277 -28907895 + Kanga1c DNA Tc2 143 244 -485 1 1311 225 0 0 0 chr9 95168311 95168336 -28907836 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1311 180 0 0 0 chr9 95168589 95168609 -28907563 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1311 1259 20 0 7 chr9 95168609 95168756 -28907416 - B1_Mm SINE Alu 0 147 2 1 1311 193 386 22 15 chr9 95168848 95168982 -28907190 - L2c LINE L2 -726 2693 2559 1 1311 193 330 0 10 chr9 95169007 95169105 -28907067 - L2c LINE L2 -1012 2407 2311 1 1311 324 253 88 0 chr9 95169159 95169250 -28906922 + PB1D7 SINE Alu 3 101 -19 1 1311 38638 17 3 7 chr9 95169625 95175023 -28901149 + L1Md_A LINE L1 214 5585 -298 1 1311 8831 21 1 0 chr9 95175024 95176019 -28900153 + L1Md_A LINE L1 5587 6582 0 1 1311 334 237 143 7 chr9 95176185 95176336 -28899836 - MLT1E1A LTR MaLR -35 645 440 2 1311 282 311 22 103 chr9 95176481 95176617 -28899555 - MLT1E1A LTR MaLR -527 153 29 2 1311 1087 254 59 13 chr9 95177085 95177392 -28898780 - MTEb LTR MaLR 0 379 59 2 1311 521 191 0 0 chr9 95177435 95177529 -28898643 - MTEb LTR MaLR -281 98 5 2 1311 755 325 56 40 chr9 95178386 95178832 -28897340 + ORSL-2b DNA Tip100 1 453 -55 2 1311 1648 180 86 14 chr9 95179371 95179720 -28896452 - ORR1D1 LTR MaLR 0 374 1 2 1311 1012 209 39 0 chr9 95180857 95181063 -28895109 - B3 SINE B2 0 216 3 2 1311 219 36 0 0 chr9 95181283 95181311 -28894861 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1311 260 325 0 24 chr9 95181337 95181419 -28894753 - RSINE1 SINE B4 -7 158 79 2 1311 506 200 6 0 chr9 95181545 95181620 -28894552 + polypyrimidine Low_complexity Low_complexity 103 177 0 2 1311 336 24 0 0 chr9 95181620 95181661 -28894511 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1311 506 200 6 0 chr9 95181661 95181760 -28894412 + CT-rich Low_complexity Low_complexity 3 102 0 2 1311 249 208 0 40 chr9 95182682 95182757 -28893415 - Lx7 LINE L1 -23 7673 7602 2 1311 252 222 0 0 chr9 95182758 95182830 -28893342 + (CCCA)n Simple_repeat Simple_repeat 1 72 0 2 1311 420 20 0 0 chr9 95182865 95182914 -28893258 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1311 3164 285 64 58 chr9 95182934 95184301 -28891871 - Lx7 LINE L1 -433 7263 5890 2 1311 309 262 35 23 chr9 95184745 95184831 -28891341 - MTEb LTR MaLR -6 373 287 2 1311 304 240 0 96 chr9 95184879 95184962 -28891210 - MTEb LTR MaLR -280 99 25 2 1311 240 361 0 0 chr9 95185335 95185432 -28890740 + MER58B DNA MER1_type 6 102 -239 2 1311 12561 94 12 48 chr9 95185634 95188467 -28887705 - L1_Mus3 LINE L1 -7 6631 3920 2 1311 756 329 123 17 chr9 95188641 95189282 -28886890 - Kanga1 DNA Tc2 -41 1704 1134 2 1311 245 294 93 53 chr9 95190455 95190606 -28885566 - MLT1J1 LTR MaLR -233 211 55 2 1311 545 195 54 15 chr9 95190634 95190764 -28885408 + RMER19B LTR ERVK 357 491 -411 2 1311 735 188 26 62 chr9 95190756 95190949 -28885223 + RMER19C LTR ERVK 426 611 0 2 1311 288 0 0 0 chr9 95191125 95191157 -28885015 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1311 290 192 0 0 chr9 95191163 95191215 -28884957 + L1_Rod LINE L1 5627 5678 -169 2 1311 674 291 80 68 chr9 95191218 95191554 -28884618 - ORR1E LTR MaLR -2 357 18 2 1311 1258 283 39 46 chr9 95191570 95192114 -28884058 + L1MA6 LINE L1 5742 6281 -19 2 1311 36138 35 1 0 chr9 95192477 95199028 -28877144 + L1Md_T LINE L1 1 5589 -297 2 1311 9177 5 0 0 chr9 95199028 95200024 -28876148 + L1Md_T LINE L1 5590 6585 0 2 1311 756 288 47 25 chr9 95200027 95200262 -28875910 - MTD LTR MaLR -28 391 152 2 1311 535 259 23 12 chr9 95200270 95200442 -28875730 + MER2 DNA MER2_type 96 269 -76 2 1311 524 248 199 45 chr9 95200498 95200764 -28875408 - ORR1D1 LTR MaLR 0 384 78 2 1311 9622 121 67 58 chr9 95200769 95203560 -28872612 - Lx4B LINE L1 -7 7051 4178 2 1311 8728 99 45 49 chr9 95203557 95204068 -28872104 - Lx4B LINE L1 -3205 2672 2120 2 1311 180 0 0 0 chr9 95204068 95204088 -28872084 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 1311 8728 99 45 49 chr9 95204088 95204203 -28871969 - Lx4B LINE L1 -3758 2119 2057 2 1311 216 0 0 0 chr9 95204203 95204227 -28871945 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1311 8728 112 85 33 chr9 95204227 95205517 -28870655 - Lx4B LINE L1 -3821 2056 668 2 1311 550 152 30 0 chr9 95205517 95205616 -28870556 - ORR1D1 LTR MaLR -272 102 1 2 1311 241 303 30 0 chr9 95205816 95205882 -28870290 - LTR78 LTR ERV1 -962 342 275 2 1311 194 301 0 20 chr9 95206114 95206177 -28869995 - MIRb SINE MIR -207 69 12 2 1311 285 146 0 0 chr9 95206474 95206522 -28869650 + (ATG)n Simple_repeat Simple_repeat 2 49 0 2 1311 238 181 40 27 chr9 95206523 95206597 -28869575 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 2 1311 219 69 0 0 chr9 95207177 95207206 -28868966 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1311 396 0 0 0 chr9 95207499 95207543 -28868629 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1311 387 0 0 0 chr9 95207543 95207585 -28868587 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1311 3843 68 0 0 chr9 95207746 95208220 -28867952 - L1_Mus2 LINE L1 0 6566 6093 2 1311 777 224 31 12 chr9 95208220 95208383 -28867789 - Lx9 LINE L1 -1116 6528 6363 2 1311 948 72 7 35 chr9 95208502 95208646 -28867526 + L1Md_F2 LINE L1 6439 6578 -4 2 1311 215 279 0 0 chr9 95209554 95209597 -28866575 + G-rich Low_complexity Low_complexity 2 44 0 2 1311 1670 150 45 0 chr9 95210935 95211221 -28864951 + Lx LINE L1 6341 6639 -15 2 1311 204 40 0 0 chr9 95211221 95211246 -28864926 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 2 1311 3000 67 23 18 chr9 95212851 95213249 -28862923 + MTB LTR MaLR 1 400 0 2 1311 1140 169 0 11 chr9 95213527 95213718 -28862454 + B3 SINE B2 1 189 -27 2 1311 706 288 6 0 chr9 95214391 95214554 -28861618 - B3A SINE B2 -34 164 1 2 1311 393 188 0 0 chr9 95214726 95214811 -28861361 + GA-rich Low_complexity Low_complexity 3 87 0 2 1311 188 301 9 80 chr9 95215453 95215565 -28860607 + MIR SINE MIR 43 146 -62 2 1311 371 242 92 23 chr9 95215620 95215751 -28860421 + LTR52 LTR ERVL 41 180 -241 2 1311 651 90 0 0 chr9 95215882 95215982 -28860190 + (TG)n Simple_repeat Simple_repeat 2 101 0 2 1311 312 321 59 92 chr9 95216085 95216172 -28860000 - MER33 DNA MER1_type 0 324 254 2 1311 798 164 63 14 chr9 95216172 95216314 -28859858 + B1_Mur1 SINE Alu 1 149 0 2 1311 312 321 59 92 chr9 95216314 95216531 -28859641 - MER33 DNA MER1_type -71 253 30 2 1311 758 179 0 56 chr9 95216687 95216829 -28859343 + B1_Mur3 SINE Alu 1 134 -15 2 1311 332 314 113 36 chr9 95217140 95217414 -28858758 + MLT1A0 LTR MaLR 54 348 -17 2 1311 267 325 34 51 chr9 95217522 95217697 -28858475 - MIRb SINE MIR -63 205 34 2 1311 620 207 0 0 chr9 95218091 95218202 -28857970 + PB1D9 SINE Alu 3 113 -7 2 1311 853 254 81 21 chr9 95218297 95218618 -28857554 - MLT1A0 LTR MaLR -15 359 2 2 1311 1455 253 56 8 chr9 95218619 95219013 -28857159 - MLT1A0-int LTR MaLR 0 1735 1323 2 1311 22 0 0 0 chr9 95219112 95219134 -28857038 + AT_rich Low_complexity Low_complexity 1 22 0 2 1311 268 350 135 18 chr9 95220759 95220922 -28855250 - MLT1G LTR MaLR 0 591 410 2 1311 309 362 66 41 chr9 95221003 95221274 -28854898 - MLT1G LTR MaLR -309 282 5 2 1311 423 0 0 0 chr9 95223765 95223812 -28852360 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1311 229 284 92 0 chr9 95224669 95224778 -28851394 - MIR3 SINE MIR -48 160 42 2 1311 621 0 0 0 chr9 95225945 95226014 -28850158 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 2 1311 453 133 0 0 chr9 95226597 95226672 -28849500 + (T)n Simple_repeat Simple_repeat 1 75 0 2 1311 425 0 0 58 chr9 95226669 95226738 -28849434 + (GTTTG)n Simple_repeat Simple_repeat 5 69 0 2 1311 1178 75 0 0 chr9 95226762 95226909 -28849263 - B1_Mus1 SINE Alu -1 147 1 2 1311 270 0 0 0 chr9 95227543 95227573 -28848599 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1311 1377 149 7 108 chr9 95228847 95229133 -28847039 + Lx4A LINE L1 6802 7058 0 2 1311 317 212 81 12 chr9 95230375 95230461 -28845711 - MLT1A1 LTR MaLR -193 215 124 2 1311 513 287 52 18 chr9 95230482 95230725 -28845447 - Lx8 LINE L1 -308 7165 6899 2 1311 1029 235 74 0 chr9 95230725 95230968 -28845204 - Lx8 LINE L1 -880 6593 6333 2 1311 546 200 0 0 chr9 95230992 95231226 -28844946 + (TG)n Simple_repeat Simple_repeat 1 234 0 2 1311 1169 258 57 77 chr9 95231570 95232292 -28843880 - Lx8 LINE L1 -1647 5997 5239 2 1311 331 206 136 10 chr9 95232302 95232405 -28843767 + L1_Rod LINE L1 5106 5221 -626 2 1311 450 277 0 9 chr9 95232527 95232640 -28843532 + PB1D10 SINE Alu 1 112 -5 2 1311 278 299 0 0 chr9 95232660 95232737 -28843435 + ID4 SINE ID 2 78 -5 2 1311 435 276 169 40 chr9 95232836 95233214 -28842958 + HAL1 LINE L1 1269 1695 -812 2 1311 330 274 78 0 chr9 95233564 95233666 -28842506 + PB1D7 SINE Alu 6 115 -5 2 1311 547 286 6 38 chr9 95233689 95233849 -28842323 + RSINE1 SINE B4 3 157 -8 2 1311 537 16 0 0 chr9 95233877 95233939 -28842233 + (CCA)n Simple_repeat Simple_repeat 1 62 0 2 1311 269 109 22 0 chr9 95233943 95233989 -28842183 + (GGA)n Simple_repeat Simple_repeat 3 49 0 2 1311 226 319 88 0 chr9 95234443 95234556 -28841616 + HAL1b LINE L1 1403 1525 -484 2 1311 209 324 82 34 chr9 95235031 95235167 -28841005 - L2a LINE L2 -182 3205 3069 2 1311 186 346 25 0 chr9 95235276 95235357 -28840815 - L2a LINE L2 -509 2910 2828 2 1311 263 197 79 0 chr9 95235637 95235713 -28840459 + RLTR23 LTR ERV1 349 430 0 2 1311 752 126 26 0 chr9 95235729 95235880 -28840292 + (TGGA)n Simple_repeat Simple_repeat 4 158 0 2 1311 974 76 41 0 chr9 95235896 95236067 -28840105 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 2 1311 301 141 59 0 chr9 95236079 95236164 -28840008 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 2 1311 271 342 97 83 chr9 95236426 95237543 -28838629 - L2a LINE L2 -1051 2368 1237 2 1311 436 319 60 40 chr9 95237712 95237911 -28838261 + MLT1G3 LTR MaLR 99 301 -294 2 1311 267 318 115 28 chr9 95238443 95238660 -28837512 + MIRb SINE MIR 27 262 -6 2 1311 415 332 147 36 chr9 95238707 95239094 -28837078 - L2a LINE L2 -2706 713 284 2 1311 891 192 112 10 chr9 95239271 95239476 -28836696 + ORR1B1 LTR MaLR 2 227 -167 2 1311 360 0 0 0 chr9 95239589 95239629 -28836543 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1311 210 191 11 45 chr9 95240135 95240223 -28835949 + T-rich Low_complexity Low_complexity 3 87 0 2 1311 1012 254 42 42 chr9 95240389 95240517 -28835655 + Lx7 LINE L1 6570 6698 -998 2 1311 1014 9 0 0 chr9 95240517 95240632 -28835540 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 2 1311 1012 254 42 42 chr9 95240632 95240790 -28835382 + Lx7 LINE L1 6699 6856 -840 2 1311 555 346 33 21 chr9 95240893 95241283 -28834889 + L1M2 LINE L1 2778 3177 -2670 2 1311 401 236 70 35 chr9 95241419 95241590 -28834582 + L1M2 LINE L1 4149 4325 -1818 2 1311 352 326 146 23 chr9 95241590 95241810 -28834362 - MLT1A0 LTR MaLR -71 294 48 2 1311 587 142 9 0 chr9 95242814 95242920 -28833252 + C-rich Low_complexity Low_complexity 4 110 0 2 1311 22 56 0 0 chr9 95243573 95243609 -28832563 + AT_rich Low_complexity Low_complexity 1 36 0 2 1311 1729 74 4 4 chr9 95243624 95243854 -28832318 - L1_Mus1 LINE L1 0 6567 6338 2 1311 982 21 0 1 chr9 95243856 95243983 -28832189 + B1_Mus1 SINE Alu 22 143 -5 2 1311 250 176 0 42 chr9 95243984 95244055 -28832117 + A-rich Low_complexity Low_complexity 4 71 0 2 1311 405 0 0 0 chr9 95244142 95244187 -28831985 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1311 345 278 25 44 chr9 95244543 95244701 -28831471 + MIR SINE MIR 2 156 -106 2 1311 1095 158 102 0 chr9 95244900 95245096 -28831076 + B3 SINE B2 1 216 0 2 1311 21 36 0 0 chr9 95245096 95245124 -28831048 + AT_rich Low_complexity Low_complexity 1 28 0 3 1311 1021 67 13 13 chr9 95245328 95245479 -28830693 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 3 1311 6854 32 0 0 chr9 95246373 95247162 -28829010 - L1Md_T LINE L1 0 6582 5794 3 1311 853 9 19 0 chr9 95248021 95248127 -28828045 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 3 1311 263 194 81 0 chr9 95248735 95248797 -28827375 + ID SINE ID 17 83 -141 3 1311 408 266 59 51 chr9 95248901 95249152 -28827020 + L1MEg LINE L1 944 1198 -4886 3 1311 437 157 0 0 chr9 95249152 95249222 -28826950 + ID4_ SINE ID 3 72 -11 3 1311 408 266 59 51 chr9 95249222 95249243 -28826929 + L1MEg LINE L1 1199 1217 -4867 3 1311 1836 112 92 6 chr9 95249864 95250180 -28825992 + ORR1B1 LTR MaLR 52 394 0 3 1311 281 89 0 22 chr9 95251019 95251065 -28825107 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 3 1311 465 19 0 0 chr9 95251952 95252006 -28824166 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1311 360 97 0 0 chr9 95252006 95252068 -28824104 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1311 379 241 52 26 chr9 95252948 95253063 -28823109 - PB1D7 SINE Alu 0 120 3 3 1311 252 0 0 0 chr9 95253417 95253445 -28822727 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1311 983 53 0 0 chr9 95253463 95253595 -28822577 - B1_Mm SINE Alu 0 147 16 3 1311 766 69 30 30 chr9 95253607 95253742 -28822430 - L1Md_F2 LINE L1 -4 6578 6444 3 1311 1899 57 1 4 chr9 95253743 95254001 -28822171 + L1Md_F2 LINE L1 6201 6459 -123 3 1311 464 292 0 9 chr9 95254146 95254260 -28821912 - B1F SINE Alu -19 130 18 3 1311 227 346 84 56 chr9 95254170 95254277 -28821895 - B4A SINE B4 -97 195 86 3 1311 21 0 0 0 chr9 95255215 95255236 -28820936 + AT_rich Low_complexity Low_complexity 1 21 0 3 1311 1001 104 0 0 chr9 95255804 95255938 -28820234 + B1_Mm SINE Alu 2 135 -12 3 1311 714 44 0 0 chr9 95255938 95256028 -28820144 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 3 1311 379 258 0 22 chr9 95256029 95256164 -28820008 + G-rich Low_complexity Low_complexity 2 133 0 3 1311 1248 18 53 0 chr9 95256171 95256340 -28819832 + (GGGAA)n Simple_repeat Simple_repeat 2 179 0 3 1311 828 30 0 0 chr9 95256340 95256438 -28819734 + (GAAA)n Simple_repeat Simple_repeat 4 102 0 3 1311 8146 27 7 13 chr9 95256916 95257885 -28818287 + L1Md_F3 LINE L1 5607 6569 -15 3 1311 337 348 48 48 chr9 95258013 95258179 -28817993 + MER5A1 DNA MER1_type 1 166 0 3 1311 371 249 65 15 chr9 95260125 95260238 -28815934 + B1F1 SINE Alu 5 116 -1 3 1311 7839 55 16 0 chr9 95260532 95261487 -28814685 + L1Md_F2 LINE L1 5598 6567 -15 3 1311 614 274 119 46 chr9 95261509 95261809 -28814363 - L1M2 LINE L1 -1428 4715 4404 3 1311 233 229 0 114 chr9 95261809 95261821 -28814351 - tRNA-Ala-GCY_ tRNA tRNA -3 72 61 3 1311 230 0 0 32 chr9 95261821 95261852 -28814320 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1311 233 229 0 114 chr9 95261852 95261918 -28814254 - tRNA-Ala-GCY_ tRNA tRNA -15 60 3 3 1311 614 274 119 46 chr9 95261918 95261962 -28814210 - L1M2 LINE L1 -1740 4403 4346 3 1311 260 236 55 28 chr9 95261998 95262107 -28814065 - L1M5 LINE L1 -1061 5085 4974 3 1311 405 0 0 0 chr9 95263512 95263557 -28812615 + (TTG)n Simple_repeat Simple_repeat 2 46 0 3 1311 4150 109 11 2 chr9 95263573 95264181 -28811991 - L1_Mus3 LINE L1 -1 6637 6024 3 1311 1306 55 4 8 chr9 95264777 95265033 -28811139 + (GAAA)n Simple_repeat Simple_repeat 1 254 0 3 1311 223 300 62 0 chr9 95265797 95265877 -28810295 - MIRc SINE MIR -118 150 66 3 1311 480 324 80 41 chr9 95266598 95266807 -28809365 + L1MC4a LINE L1 6223 6432 -1450 3 1311 552 30 0 0 chr9 95266807 95266873 -28809299 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1311 480 324 80 41 chr9 95266873 95267052 -28809120 + L1MC4a LINE L1 6433 6625 -1257 3 1311 664 277 94 36 chr9 95267024 95267387 -28808785 - L1MB4 LINE L1 0 6180 5797 3 1311 2376 294 90 96 chr9 95267369 95268740 -28807432 + Lx8 LINE L1 6101 7464 -9 3 1311 848 282 102 31 chr9 95268771 95269221 -28806951 - L1M3 LINE L1 -347 5824 5343 3 1311 1796 271 99 11 chr9 95269293 95269928 -28806244 - L1M3 LINE L1 -1015 5125 4435 3 1311 2002 105 14 112 chr9 95269985 95270350 -28805822 - ORR1A4 LTR MaLR 0 329 1 3 1311 26 0 0 0 chr9 95270464 95270490 -28805682 + AT_rich Low_complexity Low_complexity 1 26 0 3 1311 482 234 137 153 chr9 95270518 95270948 -28805224 - L1M3 LINE L1 -1696 4444 4022 3 1311 232 287 102 51 chr9 95270945 95271121 -28805051 + L1MD3 LINE L1 7750 7934 -61 3 1311 1694 242 22 55 chr9 95271150 95271605 -28804567 + Lx8 LINE L1 6334 6773 -700 3 1311 834 228 91 21 chr9 95272970 95273212 -28802960 + B4A SINE B4 1 259 -33 3 1311 300 304 8 42 chr9 95273282 95273402 -28802770 + B1F SINE Alu 1 116 -1 3 1311 895 163 33 0 chr9 95273891 95274044 -28802128 + RMER6-int LTR ERVK 3018 3175 -2 3 1311 2567 137 286 9 chr9 95274047 95274386 -28801786 + RMER6C LTR ERVK 3 431 -259 3 1311 408 20 0 0 chr9 95274386 95274435 -28801737 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1311 2567 137 286 9 chr9 95274435 95274634 -28801538 + RMER6C LTR ERVK 432 690 0 3 1311 423 0 0 0 chr9 95275039 95275086 -28801086 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1311 377 254 8 78 chr9 95275089 95275217 -28800955 - B3 SINE B2 -54 162 44 3 1311 239 29 57 0 chr9 95277106 95277141 -28799031 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 3 1311 16891 45 20 21 chr9 95277184 95278835 -28797337 - L1Md_F2 LINE L1 0 6582 4898 3 1311 226 183 46 77 chr9 95278835 95278900 -28797272 + RMER20A LTR ERVK 186 248 -268 3 1311 16891 45 20 21 chr9 95278900 95280108 -28796064 - L1Md_F2 LINE L1 0 4897 3663 3 1311 1941 158 23 26 chr9 95280119 95280469 -28795703 + MTC LTR MaLR 73 421 0 3 1311 350 287 91 18 chr9 95283286 95283396 -28792776 + B1F SINE Alu 16 133 -16 3 1311 335 285 94 130 chr9 95283386 95283640 -28792532 + B4A SINE B4 48 292 0 3 1311 522 191 9 45 chr9 95283783 95283893 -28792279 + PB1D10 SINE Alu 5 110 -7 3 1311 483 63 0 0 chr9 95283924 95283987 -28792185 + (GGGAA)n Simple_repeat Simple_repeat 5 67 0 3 1311 252 0 0 0 chr9 95285566 95285594 -28790578 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1311 495 0 0 0 chr9 95285594 95285648 -28790524 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1311 240 159 63 0 chr9 95285657 95285720 -28790452 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 3 1311 240 293 0 13 chr9 95286252 95286328 -28789844 - ID4 SINE ID -6 77 3 3 1311 1659 168 27 45 chr9 95286560 95286890 -28789282 + Lx5 LINE L1 6727 7050 0 3 1311 637 343 34 53 chr9 95286901 95287221 -28788951 - ORR1E LTR MaLR -41 318 5 3 1311 1295 281 191 23 chr9 95287687 95288394 -28787778 + L1MC4 LINE L1 6764 7589 -453 3 1311 362 322 34 0 chr9 95288916 95289065 -28787107 - MLT1J LTR MaLR -357 155 2 3 1312 477 0 0 0 chr9 95290420 95290473 -28785699 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1312 288 0 0 0 chr9 95290700 95290732 -28785440 + (CATA)n Simple_repeat Simple_repeat 4 35 0 3 1312 773 221 69 15 chr9 95290802 95291004 -28785168 - B3 SINE B2 -3 213 1 3 1312 321 248 101 0 chr9 95291632 95291741 -28784431 + MIR SINE MIR 60 179 -83 3 1312 347 89 0 0 chr9 95292046 95292091 -28784081 + HAL1-3A_ME LINE L1 1968 2012 -846 3 1312 255 268 0 0 chr9 95292096 95292193 -28783979 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 1312 440 317 57 51 chr9 95293087 95293263 -28782909 + B4A SINE B4 2 178 -114 3 1312 3269 45 2 48 chr9 95293432 95293871 -28782301 - L1Md_F2 LINE L1 0 6582 6164 3 1312 251 254 16 33 chr9 95294318 95294379 -28781793 - MER5A1 DNA MER1_type -34 132 73 3 1312 615 137 8 16 chr9 95296232 95296358 -28779814 + GA-rich Low_complexity Low_complexity 2 126 0 3 1312 254 277 139 16 chr9 95296434 95296564 -28779608 - MLT1L LTR MaLR -365 147 8 3 1312 189 159 0 0 chr9 95297025 95297069 -28779103 + A-rich Low_complexity Low_complexity 1 44 0 3 1312 307 318 20 13 chr9 95297122 95297272 -28778900 + GA-rich Low_complexity Low_complexity 2 152 0 3 1312 260 252 102 83 chr9 95298132 95298240 -28777932 - LTR85a LTR Gypsy? -581 121 12 3 1312 268 283 172 11 chr9 95299732 95299825 -28776347 + PB1D10 SINE Alu 10 117 0 3 1312 337 287 9 44 chr9 95299828 95299941 -28776231 + MER45A DNA Tip100 70 178 0 3 1312 983 249 16 0 chr9 95300743 95300822 -28775350 + ID SINE ID 2 83 -141 3 1312 331 306 31 62 chr9 95300822 95300951 -28775221 + B1_Mus2 SINE Alu 1 125 -22 3 1312 254 29 0 28 chr9 95300957 95300993 -28775179 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1312 506 16 0 16 chr9 95301036 95301100 -28775072 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1312 398 20 0 19 chr9 95301145 95301197 -28774975 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1312 198 0 0 0 chr9 95302660 95302682 -28773490 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1312 227 200 20 20 chr9 95304762 95304813 -28771359 + GA-rich Low_complexity Low_complexity 2 52 0 3 1312 489 62 0 0 chr9 95304859 95304924 -28771248 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1312 24 32 0 0 chr9 95306720 95306751 -28769421 + GC_rich Low_complexity Low_complexity 1 31 0 3 1312 25 0 0 0 chr9 95307950 95307975 -28768197 + GC_rich Low_complexity Low_complexity 1 25 0 3 1312 230 164 0 103 chr9 95308970 95309038 -28767134 + T-rich Low_complexity Low_complexity 3 63 0 3 1312 201 39 0 0 chr9 95309040 95309066 -28767106 + (TTG)n Simple_repeat Simple_repeat 3 28 0 3 1312 655 253 6 36 chr9 95309112 95309280 -28766892 + RSINE1 SINE B4 3 165 0 3 1312 234 0 0 0 chr9 95309451 95309477 -28766695 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 1312 366 316 49 55 chr9 95309517 95309681 -28766491 - RSINE1 SINE B4 -1 164 2 3 1312 189 121 0 0 chr9 95310309 95310342 -28765830 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1312 225 0 0 0 chr9 95311265 95311290 -28764882 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1312 243 0 0 0 chr9 95313103 95313130 -28763042 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1312 1409 82 0 25 chr9 95314197 95314396 -28761776 + B2_Mm2 SINE B2 2 195 0 3 1312 1154 201 10 0 chr9 95314413 95314617 -28761555 + B3 SINE B2 5 210 -6 3 1312 545 199 60 87 chr9 95314764 95314777 -28761395 + B4 SINE B4 77 218 -71 4 1312 1084 45 0 0 chr9 95314777 95314910 -28761262 + B1_Mus1 SINE Alu 8 140 -8 4 1312 1348 156 28 0 chr9 95315185 95315403 -28760769 + URR1B DNA MER1_type 1 224 -1 4 1312 651 226 6 66 chr9 95315423 95315453 -28760719 - RCHARR1 DNA MER1_type -3 971 948 4 1312 3614 150 85 31 chr9 95315453 95316132 -28760040 + RMER6D LTR ERVK 1 716 -4 4 1312 651 226 6 66 chr9 95316132 95316267 -28759905 - RCHARR1 DNA MER1_type -27 947 816 4 1312 1060 308 83 20 chr9 95316285 95316633 -28759539 - MTE2b LTR MaLR -7 372 3 4 1312 2614 238 110 13 chr9 95316639 95317299 -28758873 - RCHARR1 DNA MER1_type -212 762 53 4 1312 243 0 0 0 chr9 95317299 95317326 -28758846 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1312 2614 238 110 13 chr9 95317326 95317358 -28758814 - RCHARR1 DNA MER1_type -922 52 3 4 1312 284 294 53 110 chr9 95318236 95318481 -28757691 - L4 LINE RTE -14 2015 1785 4 1312 4620 219 31 56 chr9 95318775 95320411 -28755761 + RMER1A Other Other 8 1030 0 4 1312 6938 63 16 4 chr9 95321741 95323119 -28753053 + L1VL4 LINE L1 421 1816 -1743 4 1312 7424 102 20 22 chr9 95323117 95324539 -28751633 + Lx LINE L1 5229 6644 -10 4 1312 399 157 0 0 chr9 95324806 95324876 -28751296 + CT-rich Low_complexity Low_complexity 3 72 0 4 1312 873 209 0 81 chr9 95325420 95325618 -28750554 + B3A SINE B2 1 182 -16 4 1312 1761 197 35 45 chr9 95325622 95325999 -28750173 - ORR1D1 LTR MaLR -1 373 1 4 1312 987 16 0 23 chr9 95326319 95326451 -28749721 + (CCCTAA)n Simple_repeat Simple_repeat 2 130 0 4 1312 376 341 97 47 chr9 95329249 95329588 -28746584 - MER113 DNA MER1_type -7 514 159 4 1312 601 248 21 7 chr9 95330408 95330550 -28745622 - B1F SINE Alu -1 148 5 4 1312 3448 166 89 15 chr9 95330552 95331213 -28744959 + RMER6D LTR ERVK 3 712 -8 4 1312 240 111 0 0 chr9 95331442 95331478 -28744694 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1312 549 184 10 10 chr9 95331478 95331582 -28744590 - B1_Mur4 SINE Alu -6 144 41 4 1312 494 110 0 108 chr9 95331605 95331920 -28744252 + C-rich Low_complexity Low_complexity 1 280 0 4 1312 294 109 0 21 chr9 95331921 95331968 -28744204 - B1_Mus1 SINE Alu -93 55 10 4 1312 464 334 164 10 chr9 95332105 95332416 -28743756 - MLT1A LTR MaLR -15 359 1 4 1312 441 129 0 0 chr9 95332509 95332579 -28743593 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1312 927 223 48 0 chr9 95332979 95333185 -28742987 + B3 SINE B2 1 216 0 4 1312 320 131 107 0 chr9 95333227 95333311 -28742861 + Lx9 LINE L1 7551 7643 -1 4 1312 219 330 0 37 chr9 95333435 95333542 -28742630 + GA-rich Low_complexity Low_complexity 4 106 0 4 1312 204 232 54 0 chr9 95334107 95334163 -28742009 + (TATG)n Simple_repeat Simple_repeat 2 60 0 4 1312 870 314 0 67 chr9 95334180 95334433 -28741739 - B4A SINE B4 -4 288 53 4 1312 21 0 0 0 chr9 95334565 95334586 -28741586 + AT_rich Low_complexity Low_complexity 1 21 0 4 1312 394 276 11 0 chr9 95334586 95334673 -28741499 - ID_B1 SINE B4 -23 201 114 4 1312 1173 68 0 0 chr9 95334723 95334870 -28741302 + B1_Mus2 SINE Alu 1 147 0 4 1312 1185 246 149 64 chr9 95334979 95335508 -28740664 - RMER4B LTR ERVK -11 574 1 4 1312 718 20 41 0 chr9 95335612 95335710 -28740462 + (TCCC)n Simple_repeat Simple_repeat 2 103 0 4 1312 540 186 10 0 chr9 95337069 95337166 -28739006 + PB1D9 SINE Alu 9 106 -14 4 1312 246 203 0 48 chr9 95337926 95337988 -28738184 + G-rich Low_complexity Low_complexity 3 61 0 4 1312 297 0 0 0 chr9 95338133 95338166 -28738006 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1312 432 97 0 0 chr9 95338166 95338227 -28737945 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1312 1132 216 126 62 chr9 95338776 95339117 -28737055 - ORR1D2 LTR MaLR -7 363 1 4 1312 790 278 64 102 chr9 95339563 95339936 -28736236 - MT2A LTR ERVL -164 369 11 4 1312 862 146 69 7 chr9 95340781 95340926 -28735246 + B2_Mm1t SINE B2 2 155 -38 4 1312 279 0 0 0 chr9 95340929 95340960 -28735212 + (TAA)n Simple_repeat Simple_repeat 3 33 0 4 1312 384 83 328 9 chr9 95340998 95341103 -28735069 + B2_Mm2 SINE B2 47 188 -7 4 1312 182 250 156 22 chr9 95344845 95344935 -28731237 - MER5A DNA MER1_type -87 102 1 4 1312 332 233 122 0 chr9 95345650 95345737 -28730435 + B4A SINE B4 1 98 -194 4 1312 1043 190 11 21 chr9 95345737 95345852 -28730320 + B3 SINE B2 3 115 -101 4 1312 2353 93 12 0 chr9 95345852 95346173 -28729999 - ORR1A2 LTR MaLR -2 325 1 4 1312 1043 190 11 21 chr9 95346173 95346245 -28729927 + B3 SINE B2 116 188 -28 4 1312 504 0 0 0 chr9 95346331 95346387 -28729785 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1312 924 160 206 0 chr9 95346415 95346590 -28729582 + B3 SINE B2 1 211 -5 4 1312 218 195 0 0 chr9 95347777 95347818 -28728354 + GA-rich Low_complexity Low_complexity 4 44 0 4 1312 25 0 0 0 chr9 95348274 95348299 -28727873 + AT_rich Low_complexity Low_complexity 1 25 0 4 1312 458 61 15 0 chr9 95348471 95348537 -28727635 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1312 240 222 32 0 chr9 95348629 95348692 -28727480 + L1MC5 LINE L1 6740 6804 -1157 4 1312 187 106 20 41 chr9 95349056 95349105 -28727067 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 4 1312 195 42 0 0 chr9 95349515 95349539 -28726633 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1312 1622 178 104 26 chr9 95350415 95350762 -28725410 - ORR1D1 LTR MaLR 0 374 1 4 1312 363 141 0 14 chr9 95351720 95351792 -28724380 - B2_Mm2 SINE B2 -3 192 122 4 1312 1174 54 0 0 chr9 95351792 95351939 -28724233 + B1_Mus2 SINE Alu 1 147 0 4 1312 207 0 0 0 chr9 95351939 95351962 -28724210 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1312 21 0 0 0 chr9 95351985 95352006 -28724166 + AT_rich Low_complexity Low_complexity 1 21 0 4 1312 1371 66 17 0 chr9 95352024 95352205 -28723967 + B2_Mm2 SINE B2 2 185 -10 4 1312 315 381 31 22 chr9 95352823 95353046 -28723126 + L1M5 LINE L1 5565 5789 -335 4 1312 197 301 96 0 chr9 95353877 95353950 -28722222 + L2 LINE L2 2730 2809 -610 4 1312 689 159 106 0 chr9 95356298 95356430 -28719742 - B1_Mur1 SINE Alu -2 147 2 4 1312 225 0 0 0 chr9 95356515 95356540 -28719632 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1312 257 250 12 70 chr9 95356578 95356664 -28719508 + RLTR25A LTR ERVK 507 587 -516 4 1312 750 67 9 0 chr9 95356592 95356697 -28719475 + B1_Mm SINE Alu 42 147 0 4 1312 656 207 107 14 chr9 95357362 95357578 -28718594 + L1MB2 LINE L1 5934 6169 -2 4 1312 291 224 101 45 chr9 95359630 95359719 -28716453 - PB1D7 SINE Alu -7 113 20 4 1312 22 0 0 0 chr9 95360513 95360535 -28715637 + AT_rich Low_complexity Low_complexity 1 22 0 4 1312 377 194 266 11 chr9 95362359 95362453 -28713719 - PB1D9 SINE Alu -1 119 2 4 1312 189 0 0 0 chr9 95363023 95363044 -28713128 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1312 1185 49 0 0 chr9 95363538 95363682 -28712490 + B1_Mus2 SINE Alu 2 145 -2 4 1312 192 40 0 0 chr9 95363688 95363713 -28712459 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 4 1312 261 274 14 0 chr9 95363931 95364004 -28712168 + L1MC4 LINE L1 7956 8029 -13 4 1312 340 255 30 30 chr9 95364231 95364332 -28711840 + RSINE1 SINE B4 56 156 -9 4 1312 221 254 34 0 chr9 95364843 95364902 -28711270 + CT-rich Low_complexity Low_complexity 6 66 0 4 1312 224 323 0 0 chr9 95365322 95365384 -28710788 + GA-rich Low_complexity Low_complexity 3 64 0 4 1312 318 328 82 49 chr9 95365777 95365960 -28710212 - MER58A DNA MER1_type -8 216 28 4 1312 608 25 0 12 chr9 95367372 95367453 -28708719 + B1_Mus2 SINE Alu 68 147 0 4 1312 1116 37 37 0 chr9 95367573 95367709 -28708463 + B1_Mus1 SINE Alu 1 141 -7 4 1312 206 118 0 0 chr9 95367711 95367745 -28708427 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1312 745 138 8 39 chr9 95367919 95368047 -28708125 - B1_Mur3 SINE Alu -2 147 24 4 1312 365 242 154 0 chr9 95368331 95368422 -28707750 - PB1D10 SINE Alu -12 105 1 4 1312 443 296 96 7 chr9 95368469 95368615 -28707557 + RSINE1 SINE B4 3 161 -4 4 1312 583 299 76 44 chr9 95368683 95368955 -28707217 + B4 SINE B4 1 272 -20 4 1312 2768 41 5 117 chr9 95369629 95370040 -28706132 + RLTR10B2 LTR ERVK 1 365 0 4 1312 296 288 53 4 chr9 95370182 95370288 -28705884 - B1F2 SINE Alu -1 116 10 4 1312 216 286 0 18 chr9 95370240 95370297 -28705875 - B4A SINE B4 -151 141 86 4 1312 264 59 0 0 chr9 95370491 95370525 -28705647 + (CCA)n Simple_repeat Simple_repeat 3 36 0 4 1312 21 36 0 0 chr9 95371261 95371289 -28704883 + AT_rich Low_complexity Low_complexity 1 28 0 4 1312 486 277 50 37 chr9 95371289 95371450 -28704722 - RSINE1 SINE B4 0 165 3 4 1312 243 0 0 0 chr9 95371599 95371626 -28704546 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1312 24 32 0 0 chr9 95372852 95372883 -28703289 + AT_rich Low_complexity Low_complexity 1 31 0 4 1312 405 102 0 0 chr9 95373117 95373176 -28702996 + (CATA)n Simple_repeat Simple_repeat 2 60 0 4 1312 523 282 160 0 chr9 95373191 95373372 -28702800 - B3 SINE B2 0 216 7 4 1312 342 0 0 0 chr9 95375245 95375283 -28700889 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 4 1312 349 255 0 0 chr9 95375484 95375577 -28700595 - BC1_Mm scRNA scRNA -58 94 2 4 1312 276 311 185 0 chr9 95375877 95376012 -28700160 - Tigger7 DNA MER2_type -1 2490 2331 4 1312 265 294 69 23 chr9 95376027 95376114 -28700058 - Tigger7 DNA MER2_type -2358 133 43 4 1312 274 294 72 48 chr9 95377482 95377607 -28698565 + Tigger5 DNA MER2_type 2279 2406 0 4 1312 243 152 0 0 chr9 95378388 95378434 -28697738 + T-rich Low_complexity Low_complexity 1 46 0 5 1312 869 130 7 40 chr9 95378434 95378586 -28697586 - B1_Mur3 SINE Alu 0 149 3 5 1312 575 218 49 33 chr9 95379358 95379521 -28696651 + B3A SINE B2 46 215 -1 5 1312 27 0 0 0 chr9 95379534 95379561 -28696611 + AT_rich Low_complexity Low_complexity 1 27 0 5 1312 21 0 0 0 chr9 95379801 95379822 -28696350 + AT_rich Low_complexity Low_complexity 1 21 0 5 1312 21 0 0 0 chr9 95379961 95379982 -28696190 + AT_rich Low_complexity Low_complexity 1 21 0 5 1312 267 257 28 28 chr9 95380060 95380132 -28696040 - B1_Mur2 SINE Alu -13 136 65 5 1312 396 241 36 12 chr9 95380074 95380222 -28695950 - ID_B1 SINE B4 -25 199 10 5 1312 384 274 151 13 chr9 95380235 95380394 -28695778 - L2 LINE L2 -600 2819 2639 5 1312 549 209 139 32 chr9 95380480 95380638 -28695534 - ID_B1 SINE B4 -48 176 2 5 1312 518 227 220 6 chr9 95380806 95380983 -28695189 + B3 SINE B2 2 216 0 5 1312 215 321 36 0 chr9 95381181 95381237 -28694935 + PB1D7 SINE Alu 7 64 -56 5 1312 1230 41 7 0 chr9 95381273 95381420 -28694752 + B1_Mus1 SINE Alu 1 148 0 5 1312 243 0 0 0 chr9 95381422 95381449 -28694723 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1312 379 267 33 11 chr9 95381449 95381540 -28694632 + B1F SINE Alu 56 148 -1 5 1312 459 287 85 54 chr9 95381568 95381697 -28694475 + RSINE1 SINE B4 33 165 0 5 1312 339 252 148 9 chr9 95381854 95381962 -28694210 - RSINE1 SINE B4 -41 124 2 5 1312 30 100 0 0 chr9 95382887 95382987 -28693185 + AT_rich Low_complexity Low_complexity 1 100 0 5 1312 262 240 231 8 chr9 95383103 95383233 -28692939 - MER58A DNA MER1_type -11 213 55 5 1312 606 248 48 0 chr9 95383239 95383384 -28692788 + RSINE1 SINE B4 8 159 -6 5 1312 630 148 329 0 chr9 95383628 95383783 -28692389 - B3 SINE B2 -10 206 1 5 1312 673 250 94 50 chr9 95383943 95384145 -28692027 - B3 SINE B2 0 216 6 5 1312 532 256 44 22 chr9 95385215 95385351 -28690821 - B1_Mur2 SINE Alu -5 144 6 5 1312 202 121 30 0 chr9 95385670 95385703 -28690469 + T-rich Low_complexity Low_complexity 4 37 0 5 1312 250 241 154 42 chr9 95385827 95385970 -28690202 + L1MB4 LINE L1 6020 6178 -2 5 1312 675 117 0 0 chr9 95386268 95386371 -28689801 + (GGAA)n Simple_repeat Simple_repeat 1 103 0 5 1312 22 35 0 0 chr9 95388166 95388195 -28687977 + AT_rich Low_complexity Low_complexity 1 29 0 5 1312 207 219 0 0 chr9 95388588 95388629 -28687543 + A-rich Low_complexity Low_complexity 1 41 0 5 1312 1679 43 0 0 chr9 95391230 95391418 -28684754 - B2_Mm1a SINE B2 -5 188 1 5 1312 1288 80 45 6 chr9 95392353 95392530 -28683642 - B2_Mm2 SINE B2 -9 186 3 5 1312 1187 65 0 0 chr9 95392565 95392704 -28683468 + B1_Mm SINE Alu 4 142 -5 5 1312 186 71 0 0 chr9 95392704 95392732 -28683440 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 1312 26 98 0 0 chr9 95393686 95393768 -28682404 + AT_rich Low_complexity Low_complexity 1 82 0 5 1312 276 100 0 0 chr9 95393885 95393925 -28682247 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5 1312 406 236 136 16 chr9 95394301 95394426 -28681746 - B1_Mur1 SINE Alu -1 148 9 5 1312 647 209 115 21 chr9 95394427 95394618 -28681554 + B3 SINE B2 8 216 0 5 1312 219 279 177 0 chr9 95395051 95395130 -28681042 + B1F1 SINE Alu 1 93 -56 5 1312 264 140 69 17 chr9 95395561 95395619 -28680553 + L1MC LINE L1 5413 5473 -2409 5 1312 21 0 0 0 chr9 95395937 95395958 -28680214 + AT_rich Low_complexity Low_complexity 1 21 0 5 1312 324 235 59 0 chr9 95397326 95397421 -28678751 + Lx9 LINE L1 6963 7050 -594 5 1312 1706 219 62 22 chr9 95397450 95397949 -28678223 + Lx9 LINE L1 7124 7642 -2 5 1312 351 193 88 35 chr9 95397942 95398055 -28678117 + Lx8 LINE L1 7344 7462 -11 5 1312 279 240 0 0 chr9 95398085 95398135 -28678037 - B1F2 SINE Alu -47 102 53 5 1312 498 319 28 0 chr9 95398176 95398320 -28677852 - RSINE1 SINE B4 -15 150 3 5 1312 922 190 90 25 chr9 95398655 95398855 -28677317 - B3 SINE B2 -3 213 1 5 1312 884 128 53 0 chr9 95399004 95399137 -28677035 + B1_Mur3 SINE Alu 1 140 -9 5 1312 232 283 0 0 chr9 95399149 95399209 -28676963 + A-rich Low_complexity Low_complexity 1 60 0 5 1312 466 281 9 0 chr9 95399368 95399482 -28676690 + PB1D9 SINE Alu 6 120 0 5 1312 1263 55 0 0 chr9 95399485 95399631 -28676541 + B1_Mus2 SINE Alu 2 147 0 5 1312 216 0 0 0 chr9 95399631 95399655 -28676517 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1312 271 250 67 0 chr9 95399746 95399806 -28676366 - ID4_ SINE ID -10 73 10 5 1312 510 292 144 42 chr9 95399890 95400154 -28676018 + B4A SINE B4 2 292 0 5 1312 377 348 44 25 chr9 95400324 95400483 -28675689 - RSINE1 SINE B4 -2 163 2 5 1312 257 65 0 61 chr9 95400508 95400557 -28675615 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1312 1088 122 13 7 chr9 95400557 95400706 -28675466 - B1_Mur4 SINE Alu 0 150 1 5 1312 30 0 0 0 chr9 95400763 95400793 -28675379 + AT_rich Low_complexity Low_complexity 1 30 0 5 1312 806 184 42 21 chr9 95400878 95401022 -28675150 + B1_Mur2 SINE Alu 3 149 0 5 1312 682 287 147 102 chr9 95401295 95401687 -28674485 - Charlie1a DNA MER1_type -658 797 336 5 1312 180 0 0 0 chr9 95401687 95401707 -28674465 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1312 682 287 147 102 chr9 95401707 95402013 -28674159 - Charlie1a DNA MER1_type -1120 335 67 5 1312 512 254 131 84 chr9 95402070 95402239 -28673933 - B4A SINE B4 -44 248 83 5 1312 1556 62 0 20 chr9 95402239 95402436 -28673736 + B2_Mm1t SINE B2 1 193 0 5 1312 512 254 131 84 chr9 95402436 95402503 -28673669 - B4A SINE B4 -210 82 2 5 1312 1298 55 0 0 chr9 95403520 95403666 -28672506 + B1_Mm SINE Alu 2 147 0 5 1312 393 180 72 52 chr9 95403750 95403860 -28672312 + B1_Mur3 SINE Alu 2 112 -37 5 1312 243 88 0 0 chr9 95403862 95403896 -28672276 + (TCTTG)n Simple_repeat Simple_repeat 2 35 0 5 1312 1051 116 0 0 chr9 95403896 95404034 -28672138 - B1_Mus1 SINE Alu -10 138 1 5 1312 22 0 0 0 chr9 95404391 95404413 -28671759 + GC_rich Low_complexity Low_complexity 1 22 0 5 1312 244 279 16 0 chr9 95405089 95405150 -28671022 + RSINE1 SINE B4 90 151 -14 5 1312 855 206 129 11 chr9 95406124 95406310 -28669862 + B3 SINE B2 1 208 -8 5 1312 31 0 0 0 chr9 95406637 95406668 -28669504 + AT_rich Low_complexity Low_complexity 1 31 0 5 1312 968 164 8 122 chr9 95406921 95407158 -28669014 + URR1B DNA MER1_type 1 210 -15 5 1312 649 269 48 48 chr9 95407158 95407365 -28668807 + B3 SINE B2 3 209 -7 5 1312 481 231 116 0 chr9 95407425 95407546 -28668626 + B3 SINE B2 76 210 -6 5 1312 660 278 106 0 chr9 95407597 95407795 -28668377 + ID_B1 SINE B4 1 219 -5 5 1312 207 309 0 18 chr9 95407796 95407852 -28668320 + polypurine Low_complexity Low_complexity 1 55 0 5 1312 435 235 189 25 chr9 95407860 95407982 -28668190 + B1F SINE Alu 1 142 -7 5 1312 207 105 0 26 chr9 95408405 95408444 -28667728 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 5 1312 1189 56 21 0 chr9 95408445 95408587 -28667585 - B1_Mus1 SINE Alu -2 146 2 5 1312 490 245 150 40 chr9 95408624 95408824 -28667348 + RMER15 LTR ERVL 30 251 -324 5 1312 477 198 127 22 chr9 95408825 95408959 -28667213 + RMER15 LTR ERVL 426 573 -2 5 1312 341 322 48 90 chr9 95408989 95409156 -28667016 + RSINE1 SINE B4 2 161 -4 5 1312 508 154 116 58 chr9 95409298 95409436 -28666736 - B1_Mus1 SINE Alu -1 147 2 5 1312 260 263 217 70 chr9 95409795 95409938 -28666234 + RSINE1 SINE B4 2 165 0 5 1312 349 214 158 25 chr9 95410289 95410409 -28665763 + ID_B1 SINE B4 82 217 -7 5 1312 22 35 0 0 chr9 95411147 95411176 -28664996 + AT_rich Low_complexity Low_complexity 1 29 0 5 1312 260 247 25 25 chr9 95413004 95413083 -28663089 - RSINE1 SINE B4 -86 79 1 5 1312 280 290 87 39 chr9 95413087 95413113 -28663059 - PB1D10 SINE Alu -3 114 6 5 1312 286 256 115 0 chr9 95413113 95413191 -28662981 - ID_B1 SINE B4 -51 173 87 5 1312 420 174 181 7 chr9 95413242 95413362 -28662810 - B1_Mus1 SINE Alu 0 147 9 5 1312 251 305 66 9 chr9 95413269 95413375 -28662797 - MT2B LTR ERVL -332 269 158 5 1312 243 305 112 19 chr9 95413291 95413398 -28662774 - ID_B1 SINE B4 -55 169 53 5 1312 189 0 0 0 chr9 95413600 95413621 -28662551 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5 1312 1266 56 0 0 chr9 95413623 95413767 -28662405 - B1_Mus1 SINE Alu -4 144 1 5 1312 2209 87 436 22 chr9 95414183 95414596 -28661576 - MT2B2 LTR ERVL 0 584 1 5 1312 311 26 0 0 chr9 95414596 95414634 -28661538 - MERVL-int LTR ERVL 0 5485 5448 5 1312 287 178 13 40 chr9 95414634 95414710 -28661462 - ORR1A3-int LTR MaLR -1323 640 567 5 1312 360 91 55 0 chr9 95414710 95414765 -28661407 - MERVL-int LTR ERVL -132 5629 5572 5 1312 2124 92 69 0 chr9 95414797 95415101 -28661071 - MERVL-int LTR ERVL -276 5485 5161 5 1312 22736 97 21 17 chr9 95415098 95418200 -28657972 - MERVL-int LTR ERVL -2275 3210 87 5 1312 1701 27 0 0 chr9 95418200 95418383 -28657789 - B2_Mm1a SINE B2 -8 185 3 5 1312 22736 97 21 17 chr9 95418383 95418477 -28657695 - MERVL-int LTR ERVL -5399 86 1 5 1312 1718 102 43 8 chr9 95418477 95418734 -28657438 - MT2C_Mm LTR ERVL 0 475 210 5 1312 2147 64 21 0 chr9 95418750 95419032 -28657140 + MTB LTR MaLR 113 400 0 5 1312 6744 93 14 114 chr9 95419032 95419194 -28656978 + MTB-int LTR MaLR 1 156 -942 5 1312 1269 43 0 0 chr9 95419194 95419334 -28656838 + B1_Mus2 SINE Alu 1 140 -7 5 1312 744 43 0 0 chr9 95419337 95419429 -28656743 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 1312 6744 93 14 114 chr9 95419429 95420304 -28655868 + MTB-int LTR MaLR 157 945 -153 5 20 1251 62 0 0 chr9 95420304 95420450 -28655722 - B1_Mus2 SINE Alu 0 147 2 5 1313 6744 93 14 114 chr9 95420450 95420620 -28655552 + MTB-int LTR MaLR 946 1092 -6 5 1313 3070 45 16 0 chr9 95420597 95420978 -28655194 + MTB LTR MaLR 14 400 0 5 1313 424 241 91 70 chr9 95421270 95421413 -28654759 + B3A SINE B2 47 192 -6 5 1313 1442 264 108 81 chr9 95421513 95421912 -28654260 + RMER19A LTR ERVK 1 434 -303 5 1313 2179 98 12 54 chr9 95421912 95422248 -28653924 - RLTRETN_Mm LTR ERVK 0 322 1 6 1313 1442 264 108 81 chr9 95422248 95422420 -28653752 + RMER19A LTR ERVK 435 600 -137 5 1313 1114 84 35 0 chr9 95422420 95422562 -28653610 - B1_Mm SINE Alu 0 147 1 6 1313 1442 264 108 81 chr9 95422562 95422676 -28653496 + RMER19A LTR ERVK 601 706 -31 5 1313 1266 61 0 0 chr9 95422676 95422823 -28653349 + B1_Mm SINE Alu 1 147 0 6 1313 204 125 0 0 chr9 95422828 95422860 -28653312 + (GAA)n Simple_repeat Simple_repeat 2 33 0 6 1313 265 93 0 0 chr9 95422861 95422904 -28653268 + RMER19C LTR ERVK 569 611 0 6 1313 477 0 0 0 chr9 95423008 95423061 -28653111 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 6 1313 265 277 31 0 chr9 95423067 95423132 -28653040 - ID4 SINE ID -15 68 2 6 1313 624 278 30 40 chr9 95423132 95423332 -28652840 - B4A SINE B4 -90 202 5 6 1313 562 183 42 11 chr9 95423670 95423822 -28652350 - B3A SINE B2 -52 164 1 6 1313 264 256 0 25 chr9 95423824 95423904 -28652268 - L1MB3 LINE L1 -70 6113 6036 6 1313 471 248 8 16 chr9 95423924 95424047 -28652125 + PB1 SINE Alu 6 127 0 6 1313 224 180 226 16 chr9 95424049 95424111 -28652061 + RSINE1 SINE B4 6 80 -85 6 1313 25 31 0 0 chr9 95424173 95424205 -28651967 + AT_rich Low_complexity Low_complexity 1 32 0 6 1313 301 270 48 80 chr9 95424207 95424332 -28651840 - L1MB3 LINE L1 -153 6018 5898 6 1313 207 100 0 0 chr9 95424334 95424364 -28651808 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 6 1313 429 200 10 69 chr9 95424445 95424547 -28651625 - L1MB3 LINE L1 -274 5909 5814 6 1313 377 167 9 0 chr9 95424563 95424672 -28651500 + C-rich Low_complexity Low_complexity 1 109 0 6 1313 727 169 75 75 chr9 95424672 95424871 -28651301 + ORR1D1 LTR MaLR 173 371 -3 6 1313 409 278 0 0 chr9 95425603 95425693 -28650479 - B1F SINE Alu -51 98 9 6 1313 288 339 0 43 chr9 95425693 95425720 -28650452 - ID_B1 SINE B4 -48 176 65 6 1313 468 0 0 0 chr9 95426408 95426460 -28649712 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1313 302 276 125 68 chr9 95426478 95426758 -28649414 + MLT1F2 LTR MaLR 250 545 -15 6 1313 362 247 24 0 chr9 95427101 95427186 -28648986 - PB1D10 SINE Alu 0 117 31 6 1313 1021 239 14 9 chr9 95427550 95427761 -28648411 - B3 SINE B2 -3 213 2 6 1313 504 142 34 56 chr9 95427832 95428011 -28648161 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 6 1313 252 296 154 17 chr9 95428574 95428691 -28647481 - MLT1L LTR MaLR -329 281 149 6 1313 591 137 32 0 chr9 95428812 95428907 -28647265 - B1_Mus1 SINE Alu -50 98 1 6 1313 210 209 0 20 chr9 95429308 95429357 -28646815 + MIRc SINE MIR 103 154 -114 6 1313 2496 152 27 22 chr9 95429359 95429727 -28646445 + MTC LTR MaLR 1 376 -45 6 1313 180 0 0 0 chr9 95429727 95429747 -28646425 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 6 1313 2496 152 27 22 chr9 95429747 95429789 -28646383 + MTC LTR MaLR 377 413 -8 6 1313 290 185 0 84 chr9 95429872 95429921 -28646251 + B3 SINE B2 1 49 -167 6 1313 351 0 0 0 chr9 95429921 95429960 -28646212 + (TTA)n Simple_repeat Simple_repeat 2 40 0 6 1313 290 185 0 84 chr9 95429960 95429981 -28646191 + B3 SINE B2 50 65 -151 6 1313 253 337 95 0 chr9 95429962 95430057 -28646115 - PB1D10 SINE Alu -13 104 1 6 1313 1331 169 221 16 chr9 95430069 95430376 -28645796 + ORR1D1 LTR MaLR 1 370 -4 6 1313 247 253 171 39 chr9 95431360 95431541 -28644631 + L1M5 LINE L1 5310 5514 -680 6 1313 306 279 183 23 chr9 95431575 95431864 -28644308 - MLT1H2 LTR MaLR -9 480 177 6 1313 324 244 57 40 chr9 95432076 95432200 -28643972 + L1M5 LINE L1 5555 5680 -514 6 1313 474 269 60 9 chr9 95432307 95432423 -28643749 + B1F2 SINE Alu 1 122 -27 6 1313 261 0 0 0 chr9 95432650 95432679 -28643493 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1313 345 236 0 14 chr9 95432685 95432758 -28643414 + ID4_ SINE ID 2 73 -10 6 1313 271 258 101 20 chr9 95432760 95432859 -28643313 + ID_B1 SINE B4 87 193 -31 6 1313 374 246 129 52 chr9 95432887 95433097 -28643075 + L1ME5 LINE L1 5926 6151 -43 6 1313 693 214 43 0 chr9 95433999 95434139 -28642033 + B1_Mus2 SINE Alu 2 147 0 6 1313 348 214 0 14 chr9 95434231 95434302 -28641870 - B4 SINE B4 -208 84 15 6 1313 1127 96 6 0 chr9 95434583 95434750 -28641422 + (GAA)n Simple_repeat Simple_repeat 1 168 0 6 1313 414 243 67 19 chr9 95434791 95434896 -28641276 - ID_B1 SINE B4 -21 203 94 6 1313 8571 35 17 1 chr9 95435487 95436550 -28639622 - L1Md_F3 LINE L1 -3 6581 5538 6 1313 261 83 0 0 chr9 95436777 95436813 -28639359 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 6 1313 731 246 5 80 chr9 95436933 95437145 -28639027 - B3A SINE B2 -1 197 2 6 1313 783 215 0 15 chr9 95437611 95437748 -28638424 + B1_Mur4 SINE Alu 3 137 -13 6 1313 186 43 0 0 chr9 95437751 95437774 -28638398 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1313 229 181 181 0 chr9 95437819 95437924 -28638248 - MER33 DNA MER1_type -78 246 123 6 1313 345 125 0 0 chr9 95437924 95437980 -28638192 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1313 1138 80 0 0 chr9 95437984 95438122 -28638050 - B1_Mus1 SINE Alu -7 141 4 6 1313 237 292 20 101 chr9 95438469 95438568 -28637604 + B4A SINE B4 76 166 -126 6 1313 560 138 195 35 chr9 95438505 95438618 -28637554 + B1_Mus2 SINE Alu 17 147 0 6 1313 1393 77 11 6 chr9 95438664 95438846 -28637326 - B2_Mm1t SINE B2 -8 185 3 6 1313 923 174 16 38 chr9 95438846 95439031 -28637141 - B2_Mm2 SINE B2 -13 182 2 6 1313 2231 150 84 42 chr9 95439550 95439954 -28636218 + MTC LTR MaLR 1 421 0 6 1313 358 269 54 0 chr9 95440233 95440326 -28635846 + MTE2b LTR MaLR 1 98 -281 6 1313 730 223 22 0 chr9 95440326 95440465 -28635707 + MTE2b LTR MaLR 234 375 -4 6 1313 936 217 24 29 chr9 95440485 95440694 -28635478 + ORR1D1 LTR MaLR 167 374 0 6 1313 235 272 59 47 chr9 95440705 95440790 -28635382 - L1M5 LINE L1 -433 5761 5676 6 1313 1269 201 152 50 chr9 95441377 95441718 -28634454 - MTE2a LTR MaLR -3 376 1 6 1313 455 306 84 98 chr9 95442429 95442619 -28633553 + MLT1A LTR MaLR 1 183 -191 6 1313 405 0 0 0 chr9 95442619 95442664 -28633508 + (CTG)n Simple_repeat Simple_repeat 3 47 0 6 1313 455 306 84 98 chr9 95442664 95442832 -28633340 + MLT1A LTR MaLR 184 354 -20 6 1313 525 131 0 0 chr9 95444157 95444241 -28631931 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 6 1313 1073 117 2 17 chr9 95444992 95445402 -28630770 + (TG)n Simple_repeat Simple_repeat 1 403 0 6 1313 290 24 0 45 chr9 95445950 95445994 -28630178 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 6 1313 625 250 35 0 chr9 95445994 95446138 -28630034 - B1F SINE Alu 0 149 1 6 1313 384 22 0 0 chr9 95446449 95446494 -28629678 + (TTA)n Simple_repeat Simple_repeat 1 45 0 6 1313 289 257 29 0 chr9 95446496 95446566 -28629606 + ID4 SINE ID 2 73 -10 6 1313 558 244 59 0 chr9 95446628 95446763 -28629409 - B1F2 SINE Alu -4 145 3 6 1313 762 97 0 0 chr9 95447916 95448030 -28628142 - Lx2 LINE L1 0 6997 6884 6 1313 868 97 0 0 chr9 95448030 95448144 -28628028 - Lx2 LINE L1 -368 6629 6516 6 1313 1527 142 59 4 chr9 95448970 95449312 -28626860 + MTC LTR MaLR 1 394 -27 6 1313 1011 117 21 0 chr9 95449811 95449956 -28626216 + B1_Mus1 SINE Alu 1 148 0 6 1313 200 116 22 44 chr9 95449956 95450001 -28626171 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 1313 373 51 51 0 chr9 95450865 95450924 -28625248 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 6 1313 24 0 0 0 chr9 95451130 95451154 -28625018 + AT_rich Low_complexity Low_complexity 1 24 0 6 1313 504 72 0 0 chr9 95451154 95451223 -28624949 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1313 356 289 0 0 chr9 95451228 95451304 -28624868 - RSINE1 SINE B4 -87 78 3 6 1313 28 0 0 0 chr9 95452049 95452077 -28624095 + AT_rich Low_complexity Low_complexity 1 28 0 6 1313 777 241 39 10 chr9 95452174 95452379 -28623793 + B3 SINE B2 6 216 0 6 1313 29 28 0 0 chr9 95452976 95453012 -28623160 + AT_rich Low_complexity Low_complexity 1 36 0 6 1313 473 279 33 0 chr9 95453030 95453152 -28623020 - RSINE1 SINE B4 -24 141 16 6 1313 510 17 0 0 chr9 95453335 95453394 -28622778 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1313 211 161 53 18 chr9 95453568 95453625 -28622547 + GA-rich Low_complexity Low_complexity 4 62 0 6 1313 459 246 115 0 chr9 95453672 95453802 -28622370 + B1F2 SINE Alu 5 149 0 6 1313 259 213 0 0 chr9 95453841 95453888 -28622284 + B1F2 SINE Alu 12 58 -91 6 1313 206 62 0 30 chr9 95453907 95453940 -28622232 + (CAA)n Simple_repeat Simple_repeat 1 32 0 6 1313 273 29 0 0 chr9 95453940 95453974 -28622198 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1313 230 281 67 45 chr9 95454958 95455092 -28621080 + MIRb SINE MIR 110 246 -22 6 1313 372 206 83 18 chr9 95456223 95456332 -28619840 + B1F SINE Alu 29 144 -5 6 1313 281 313 0 0 chr9 95456342 95456425 -28619747 + ID4_ SINE ID 1 83 0 6 1313 569 231 63 63 chr9 95457340 95457483 -28618689 - B1_Mur3 SINE Alu -5 144 2 6 1313 430 294 7 42 chr9 95457755 95457897 -28618275 + ID_B1 SINE B4 83 219 -5 6 1313 660 180 8 0 chr9 95457776 95457898 -28618274 + B1_Mur1 SINE Alu 23 145 -4 6 1313 21 0 0 0 chr9 95458551 95458572 -28617600 + AT_rich Low_complexity Low_complexity 1 21 0 6 1313 195 190 0 23 chr9 95458727 95458770 -28617402 + MIRb SINE MIR 124 165 -103 6 1313 216 196 0 0 chr9 95459518 95459564 -28616608 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1313 241 200 14 28 chr9 95459980 95460052 -28616120 + (CCCCG)n Simple_repeat Simple_repeat 1 71 0 6 1313 312 118 29 14 chr9 95460070 95460139 -28616033 + (CCG)n Simple_repeat Simple_repeat 3 72 0 6 1313 23 33 0 0 chr9 95460279 95460309 -28615863 + GC_rich Low_complexity Low_complexity 1 30 0 6 1313 22 56 0 0 chr9 95460322 95460358 -28615814 + GC_rich Low_complexity Low_complexity 1 36 0 6 1313 186 43 0 0 chr9 95461558 95461581 -28614591 + (TTG)n Simple_repeat Simple_repeat 1 23 0 6 1313 202 157 19 56 chr9 95463902 95463956 -28612216 + C-rich Low_complexity Low_complexity 1 52 0 7 1313 377 116 0 14 chr9 95466417 95466487 -28609685 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 7 1313 25 51 0 0 chr9 95467096 95467135 -28609037 + AT_rich Low_complexity Low_complexity 1 39 0 7 1313 268 258 0 110 chr9 95468535 95468635 -28607537 + B1F SINE Alu 29 149 0 7 1313 252 0 0 0 chr9 95470406 95470434 -28605738 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 7 1313 351 246 0 0 chr9 95471324 95471393 -28604779 - RSINE1 SINE B4 -21 144 76 7 1313 907 87 120 0 chr9 95471404 95471554 -28604618 + RMER15 LTR ERVL 28 195 -380 7 1313 1375 143 9 4 chr9 95471568 95471793 -28604379 + RMER15 LTR ERVL 347 572 -3 7 1313 1290 203 222 6 chr9 95471852 95472190 -28603982 - MTD LTR MaLR -8 411 1 7 1313 814 305 43 0 chr9 95472603 95472836 -28603336 - B4A SINE B4 -6 286 44 7 1313 314 284 0 0 chr9 95473328 95473409 -28602763 + ID_B1 SINE B4 121 201 -23 7 1313 225 254 56 0 chr9 95473380 95473451 -28602721 + B1_Mur4 SINE Alu 67 141 -9 7 1313 251 328 98 41 chr9 95474079 95474273 -28601899 + L1MCa LINE L1 1 205 -6303 7 1313 453 19 0 0 chr9 95474339 95474393 -28601779 + (CCA)n Simple_repeat Simple_repeat 2 55 0 7 1313 246 227 53 13 chr9 95474713 95474789 -28601383 + ID4 SINE ID 4 82 -1 7 1313 373 205 51 0 chr9 95475307 95475385 -28600787 + PB1D7 SINE Alu 2 83 -37 7 1313 252 284 156 10 chr9 95475311 95475407 -28600765 + B4A SINE B4 91 200 -92 7 1313 469 254 0 42 chr9 95475551 95475670 -28600502 + RSINE1 SINE B4 2 115 -50 7 1313 426 39 0 0 chr9 95475670 95475722 -28600450 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1313 207 167 0 0 chr9 95475846 95475888 -28600284 + CT-rich Low_complexity Low_complexity 1 42 0 7 1313 200 250 28 0 chr9 95475989 95476061 -28600111 + T-rich Low_complexity Low_complexity 3 76 0 7 1313 198 103 0 0 chr9 95476332 95476361 -28599811 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 7 1313 727 250 0 39 chr9 95476368 95476547 -28599625 - B3A SINE B2 -18 180 9 7 1313 447 35 0 0 chr9 95476865 95476922 -28599250 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1313 1098 201 122 7 chr9 95477091 95477387 -28598785 + MTD LTR MaLR 90 419 0 7 1313 26 82 0 0 chr9 95477509 95477570 -28598602 + AT_rich Low_complexity Low_complexity 1 61 0 7 1313 221 148 61 53 chr9 95477630 95477744 -28598428 + (TATAA)n Simple_repeat Simple_repeat 4 118 0 7 1313 1816 168 96 13 chr9 95477958 95478345 -28597827 - MTD LTR MaLR 0 419 1 7 1313 355 193 11 11 chr9 95478429 95478518 -28597654 + (TA)n Simple_repeat Simple_repeat 2 90 0 7 1313 324 218 40 120 chr9 95479268 95479393 -28596779 + PB1D9 SINE Alu 6 120 0 7 1313 515 219 0 0 chr9 95479544 95479649 -28596523 + B1F SINE Alu 14 118 -31 7 1313 850 77 31 0 chr9 95479673 95479803 -28596369 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 7 1313 303 118 59 0 chr9 95479956 95480007 -28596165 + B1_Mur3 SINE Alu 42 95 -54 7 1313 180 376 0 41 chr9 95480021 95480118 -28596054 - MER5B DNA MER1_type 0 178 86 7 1313 323 278 0 0 chr9 95480356 95480428 -28595744 - ID4 SINE ID -10 73 2 7 1313 301 217 58 0 chr9 95480428 95480497 -28595675 + Arthur1C DNA Tip100 290 362 -1 7 1313 1013 267 55 19 chr9 95480531 95480840 -28595332 + MER58B DNA MER1_type 22 341 0 7 1313 313 232 0 104 chr9 95481933 95482010 -28594162 - ID4 SINE ID -13 70 2 7 1313 322 311 29 29 chr9 95484883 95485019 -28591153 - B1F SINE Alu -8 141 6 7 1313 468 239 21 53 chr9 95485045 95485268 -28590904 + L1MA4 LINE L1 5711 5907 -1566 7 1313 227 239 11 0 chr9 95485268 95485356 -28590816 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 1313 180 0 0 0 chr9 95486518 95486538 -28589634 + (G)n Simple_repeat Simple_repeat 1 20 0 7 1313 1816 170 46 12 chr9 95486538 95486883 -28589289 + ORR1C1 LTR MaLR 10 366 -12 7 1313 1772 84 0 9 chr9 95486927 95487177 -28588995 + Lx LINE L1 5779 6019 -635 7 1313 4848 81 90 1 chr9 95487282 95487961 -28588211 + Lx LINE L1 5913 6651 -3 7 1313 449 265 8 17 chr9 95487964 95488083 -28588089 + RMER30 DNA MER1_type 85 202 0 7 1313 726 190 12 73 chr9 95488594 95488609 -28587563 + RSINE1 SINE B4 11 25 -140 7 1313 2003 136 69 21 chr9 95488609 95488984 -28587188 + ORR1B1 LTR MaLR 1 393 -1 7 1313 726 190 12 73 chr9 95488984 95489101 -28587071 + RSINE1 SINE B4 26 139 -26 7 1313 810 70 0 62 chr9 95489101 95489327 -28586845 + (CA)n Simple_repeat Simple_repeat 1 211 0 7 1313 726 190 12 73 chr9 95489327 95489357 -28586815 + RSINE1 SINE B4 140 164 -1 7 1313 745 124 31 0 chr9 95489358 95489519 -28586653 + (CA)n Simple_repeat Simple_repeat 1 166 0 7 1313 1485 158 245 37 chr9 95489825 95490258 -28585914 - RLTR11A2 LTR ERVK -4 523 1 7 1313 333 0 0 0 chr9 95491151 95491188 -28584984 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1313 275 238 49 12 chr9 95491414 95491495 -28584677 - ID_B1 SINE B4 -4 220 137 7 1313 415 283 72 49 chr9 95491508 95491731 -28584441 - ORR1E LTR MaLR -111 248 21 7 1313 192 125 0 0 chr9 95493182 95493214 -28582958 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1313 264 167 0 0 chr9 95493233 95493305 -28582867 + T-rich Low_complexity Low_complexity 5 76 0 7 1313 24 32 0 0 chr9 95494123 95494154 -28582018 + AT_rich Low_complexity Low_complexity 1 31 0 7 1313 21 0 0 0 chr9 95494679 95494700 -28581472 + AT_rich Low_complexity Low_complexity 1 21 0 7 1313 229 246 197 39 chr9 95495065 95495192 -28580980 + MLT1H LTR MaLR 11 157 -392 7 1313 401 129 42 7 chr9 95495223 95495308 -28580864 - B2_Mm2 SINE B2 -8 187 101 7 1313 1038 119 84 11 chr9 95495390 95495568 -28580604 - B2_Mm2 SINE B2 -3 192 2 7 1313 791 192 14 7 chr9 95495619 95495766 -28580406 + B1_Mur3 SINE Alu 2 149 0 7 1313 245 314 7 79 chr9 95495963 95496042 -28580130 - B4 SINE B4 -149 143 72 7 1313 414 0 0 0 chr9 95496042 95496088 -28580084 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1313 245 314 7 79 chr9 95496088 95496160 -28580012 - B4 SINE B4 -221 71 3 7 1313 287 216 146 11 chr9 95496230 95496319 -28579853 + B1F SINE Alu 28 128 -21 7 1313 569 257 45 83 chr9 95496751 95497033 -28579139 + ORR1D2 LTR MaLR 108 364 -6 7 1313 423 38 0 0 chr9 95497259 95497312 -28578860 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1313 806 202 6 0 chr9 95497338 95497516 -28578656 + (TA)n Simple_repeat Simple_repeat 1 179 0 7 1313 180 250 0 0 chr9 95497510 95497558 -28578614 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 7 1313 309 307 0 0 chr9 95497792 95497867 -28578305 - ID4_ SINE ID -1 82 8 7 1313 818 209 18 18 chr9 95500010 95500176 -28575996 - B3 SINE B2 -50 166 1 1 1313 1836 177 55 30 chr9 95501805 95502018 -28574154 + MTC LTR MaLR 2 225 -196 2 1313 2837 83 39 5 chr9 95502018 95502405 -28573767 - MTB LTR MaLR 0 400 1 3 1313 1836 177 55 30 chr9 95502405 95502593 -28573579 + MTC LTR MaLR 226 413 -8 2 1313 703 206 16 0 chr9 95502637 95502763 -28573409 + B1_Mus1 SINE Alu 2 129 -19 4 1313 237 261 43 0 chr9 95502791 95502860 -28573312 + MLT1B LTR MaLR 148 219 -171 5 1313 657 197 143 0 chr9 95502877 95503024 -28573148 - ORR1D2 LTR MaLR -2 368 201 6 1313 576 0 0 0 chr9 95503047 95503111 -28573061 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1313 317 267 11 22 chr9 95503642 95503734 -28572438 - MER57A-int LTR ERV1 -293 5894 5804 8 1313 310 226 64 11 chr9 95503769 95503794 -28572378 - PB1D10 SINE Alu 0 117 19 9 1313 328 147 29 14 chr9 95503794 95503863 -28572309 - ID_B1 SINE B4 -55 169 100 1 1313 622 297 48 29 chr9 95503844 95504095 -28572077 - MTE2b LTR MaLR -127 252 4 1 1313 205 191 0 0 chr9 95504797 95504839 -28571333 + A-rich Low_complexity Low_complexity 1 42 0 1 1313 318 174 103 11 chr9 95504841 95504928 -28571244 + Charlie15a DNA MER1_type 130 224 0 1 1313 305 245 28 28 chr9 95505457 95505566 -28570606 + B1F1 SINE Alu 30 138 -11 1 1313 348 275 57 64 chr9 95505898 95506038 -28570134 + L1MCa LINE L1 381 519 -5989 1 1313 2523 263 69 44 chr9 95506170 95506759 -28569413 - RCHARR1 DNA MER1_type -33 941 348 1 1313 1230 34 14 0 chr9 95506759 95506906 -28569266 + B1_Mur4 SINE Alu 2 150 0 1 1313 216 0 0 0 chr9 95506913 95506937 -28569235 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 1313 2523 263 69 44 chr9 95506937 95507257 -28568915 - RCHARR1 DNA MER1_type -627 347 1 1 1313 527 112 9 0 chr9 95507338 95507445 -28568727 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 1313 560 224 34 27 chr9 95508150 95508297 -28567875 - B1F2 SINE Alu -1 148 1 2 1313 1324 198 248 3 chr9 95508404 95508606 -28567566 - MTD LTR MaLR -1 418 198 2 1313 578 113 9 0 chr9 95508606 95508712 -28567460 + (CA)n Simple_repeat Simple_repeat 2 108 0 2 1313 1324 198 248 3 chr9 95508712 95508844 -28567328 - MTD LTR MaLR -222 197 3 2 1313 24 0 0 0 chr9 95509932 95509956 -28566216 + AT_rich Low_complexity Low_complexity 1 24 0 2 1313 1058 255 40 91 chr9 95510098 95510495 -28565677 - MTE2a LTR MaLR -2 377 1 2 1313 723 152 42 0 chr9 95510880 95510998 -28565174 + ETnERV2-int LTR ERVK 7070 7192 -214 2 1313 192 77 0 0 chr9 95511420 95511446 -28564726 + (TCC)n Simple_repeat Simple_repeat 2 27 0 2 1313 853 224 199 0 chr9 95511949 95512221 -28563951 - MTD LTR MaLR -76 343 18 2 1313 641 239 57 165 chr9 95512607 95513103 -28563069 + RMER10A LTR ERVL 1 442 0 2 1313 601 209 50 14 chr9 95513245 95513386 -28562786 + B1_Mur1 SINE Alu 3 148 -1 2 1313 377 236 0 0 chr9 95513480 95513552 -28562620 + B3 SINE B2 1 72 -144 3 1313 271 264 32 42 chr9 95513552 95513647 -28562525 + RLTR28B LTR ERVL 1 94 -387 3 1313 578 213 88 7 chr9 95513772 95513909 -28562263 + B1_Mur2 SINE Alu 2 149 0 3 1313 528 93 0 0 chr9 95514154 95514229 -28561943 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 3 1313 217 269 15 15 chr9 95514462 95514530 -28561642 + ID4_ SINE ID 14 81 -2 3 1313 1525 151 196 15 chr9 95514665 95514834 -28561338 + RMER10B LTR ERVL 1 213 -185 3 1313 405 0 0 0 chr9 95514834 95514879 -28561293 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1313 1525 151 196 15 chr9 95514879 95514993 -28561179 + RMER10B LTR ERVL 214 342 -56 3 1313 369 0 0 0 chr9 95514993 95515034 -28561138 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1313 1525 151 196 15 chr9 95515034 95515086 -28561086 + RMER10B LTR ERVL 343 397 -1 3 1313 25 31 0 0 chr9 95515268 95515300 -28560872 + AT_rich Low_complexity Low_complexity 1 32 0 3 1313 1052 229 53 97 chr9 95515866 95516278 -28559894 + RMER10B LTR ERVL 2 395 -3 3 1313 226 47 0 65 chr9 95516405 95516451 -28559721 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1313 1213 209 66 59 chr9 95516533 95516940 -28559232 + RMER17C LTR ERVK 1 410 0 4 1313 202 301 30 82 chr9 95517145 95517279 -28558893 + MIRb SINE MIR 19 145 -123 4 1313 370 277 180 8 chr9 95517568 95517823 -28558349 - LTR50 LTR ERVL -496 299 1 4 1313 222 116 0 0 chr9 95518222 95518265 -28557907 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1313 407 84 14 0 chr9 95518265 95518331 -28557841 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1313 354 237 30 20 chr9 95519591 95519690 -28556482 - RLTR23 LTR ERV1 0 430 331 4 1313 396 40 0 0 chr9 95520072 95520122 -28556050 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1313 397 304 31 16 chr9 95520125 95520252 -28555920 - ID_B1 SINE B4 -9 215 87 4 1313 216 336 8 48 chr9 95520355 95520480 -28555692 + MIRb SINE MIR 131 250 -18 4 1313 490 287 55 0 chr9 95520528 95520692 -28555480 - MER2 DNA MER2_type -47 298 126 5 1313 1422 84 11 0 chr9 95520951 95521142 -28555030 + B2_Mm1t SINE B2 1 193 0 5 1313 1282 85 6 33 chr9 95521363 95521384 -28554788 - B2_Mm1t SINE B2 -16 177 161 5 1313 435 38 0 0 chr9 95521384 95521437 -28554735 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 5 1313 1282 85 6 33 chr9 95521437 95521597 -28554575 - B2_Mm1t SINE B2 -33 160 1 5 1313 1007 106 42 0 chr9 95521770 95521912 -28554260 + B1_Mus1 SINE Alu 1 148 0 5 1313 26 30 0 0 chr9 95522024 95522057 -28554115 + AT_rich Low_complexity Low_complexity 1 33 0 5 1313 21 57 0 0 chr9 95523379 95523414 -28552758 + AT_rich Low_complexity Low_complexity 1 35 0 5 1313 3621 18 0 128 chr9 95523923 95524423 -28551749 - RLTR10C LTR ERVK 0 436 1 5 1313 238 143 0 0 chr9 95524435 95524477 -28551695 + Lx4A LINE L1 7016 7057 -1 5 1313 29 28 0 0 chr9 95524477 95524513 -28551659 + AT_rich Low_complexity Low_complexity 1 36 0 5 1313 1159 181 41 14 chr9 95524525 95524743 -28551429 - URR1B DNA MER1_type 0 225 2 6 1313 420 20 0 0 chr9 95525035 95525084 -28551088 + (TAA)n Simple_repeat Simple_repeat 2 50 0 6 1313 24 77 0 0 chr9 95525090 95525142 -28551030 + AT_rich Low_complexity Low_complexity 1 52 0 6 1313 282 326 130 70 chr9 95525690 95526006 -28550166 + MLT1A0 LTR MaLR 1 335 -30 6 1313 314 310 219 16 chr9 95526818 95527005 -28549167 - B4 SINE B4 -18 274 50 6 1313 331 211 0 21 chr9 95527148 95527245 -28548927 + GA-rich Low_complexity Low_complexity 2 96 0 6 1313 438 103 0 0 chr9 95528683 95528761 -28547411 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1313 350 247 31 31 chr9 95529418 95529514 -28546658 - PB1D10 SINE Alu -4 113 18 6 1313 4913 144 62 64 chr9 95529516 95529804 -28546368 + RMER19B LTR ERVK 1 236 -666 6 1313 198 0 0 0 chr9 95529804 95529826 -28546346 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 6 1313 4913 144 62 64 chr9 95529826 95530440 -28545732 + RMER19B LTR ERVK 237 900 -2 6 1313 914 193 9 123 chr9 95531088 95531252 -28544920 + Lx6 LINE L1 7262 7413 -47 7 1313 4356 46 2 2 chr9 95531252 95531772 -28544400 + L1_Mus2 LINE L1 6047 6566 0 7 1313 914 193 9 123 chr9 95531772 95531826 -28544346 + Lx6 LINE L1 7414 7455 -5 7 1313 21 0 0 0 chr9 95531834 95531855 -28544317 + AT_rich Low_complexity Low_complexity 1 21 0 7 1313 384 22 0 0 chr9 95532661 95532706 -28543466 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1313 673 204 30 15 chr9 95532709 95532843 -28543329 - B1_Mur2 SINE Alu -13 136 1 7 1313 241 288 14 0 chr9 95532976 95533049 -28543123 + ID4 SINE ID 1 74 -9 7 1313 713 228 181 19 chr9 95533488 95533747 -28542425 - MTD LTR MaLR -2 417 117 7 1313 443 248 16 33 chr9 95533751 95533843 -28542329 + B1F SINE Alu 31 124 -25 7 1313 1374 77 28 0 chr9 95533843 95534024 -28542148 + B2_Mm1t SINE B2 2 187 -6 7 1313 443 248 16 33 chr9 95534024 95534052 -28542120 + B1F SINE Alu 125 149 0 7 1313 432 0 0 0 chr9 95534300 95534348 -28541824 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1313 550 209 167 56 chr9 95534384 95534582 -28541590 - B4A SINE B4 -24 268 49 8 1313 429 20 0 0 chr9 95535008 95535058 -28541114 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1313 279 0 0 0 chr9 95536198 95536229 -28539943 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1313 475 244 73 32 chr9 95536589 95536674 -28539498 + B3 SINE B2 69 152 -64 8 1313 579 29 0 0 chr9 95536674 95536743 -28539429 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1313 475 244 73 32 chr9 95536743 95536780 -28539392 + B3 SINE B2 153 196 -20 8 1313 330 26 0 0 chr9 95536865 95536904 -28539268 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1313 941 134 0 0 chr9 95536906 95537040 -28539132 - B1_Mus1 SINE Alu -12 136 3 8 1313 321 205 12 60 chr9 95537196 95537279 -28538893 - B3A SINE B2 -108 90 12 8 1313 200 213 0 0 chr9 95537318 95537365 -28538807 + T-rich Low_complexity Low_complexity 5 51 0 8 1313 479 175 25 0 chr9 95539919 95539999 -28536173 - ID4 SINE ID -1 82 1 8 1313 222 118 0 0 chr9 95540613 95540647 -28535525 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1313 423 0 0 0 chr9 95541089 95541136 -28535036 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1313 299 260 0 40 chr9 95541141 95541217 -28534955 - MT2A LTR ERVL -162 371 299 9 1313 288 0 0 0 chr9 95541375 95541407 -28534765 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 1313 486 46 0 0 chr9 95541407 95541471 -28534701 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1313 186 43 0 0 chr9 95542794 95542817 -28533355 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 9 1313 340 218 161 0 chr9 95543186 95543273 -28532899 + B1F1 SINE Alu 1 101 -48 9 1313 738 23 0 0 chr9 95543273 95543361 -28532811 + (TC)n Simple_repeat Simple_repeat 2 89 0 9 1313 221 30 61 0 chr9 95544427 95544460 -28531712 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 9 1313 829 156 86 37 chr9 95544465 95544652 -28531520 - Lx3A LINE L1 -7 6974 6779 9 1313 192 233 67 0 chr9 95546923 95546983 -28529189 + MIR SINE MIR 12 75 -187 1 1313 326 214 12 0 chr9 95547142 95547226 -28528946 + CT-rich Low_complexity Low_complexity 3 87 0 1 1313 572 247 20 27 chr9 95547311 95547461 -28528711 + B1F SINE Alu 1 149 0 1 1313 778 224 166 37 chr9 95547485 95547726 -28528446 + B4A SINE B4 5 276 -16 1 1313 324 0 0 0 chr9 95547779 95547815 -28528357 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1313 301 311 34 84 chr9 95548143 95548276 -28527896 + MIRb SINE MIR 84 218 -50 1 1313 1125 172 29 5 chr9 95548276 95548480 -28527692 + B3 SINE B2 4 212 -4 1 1313 301 311 34 84 chr9 95548480 95548525 -28527647 + MIRb SINE MIR 219 253 -15 1 1313 671 112 0 9 chr9 95549058 95549166 -28527006 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 1 1313 1369 60 60 0 chr9 95549281 95549463 -28526709 + B2_Mm2 SINE B2 2 194 -1 1 1313 505 229 43 19 chr9 95549595 95549796 -28526376 + Lx7 LINE L1 1210 1366 -4481 1 1313 332 119 68 0 chr9 95549799 95549858 -28526314 - ORR1C1 LTR MaLR 0 378 316 1 1313 319 98 39 0 chr9 95549857 95549908 -28526264 - ORR1C1 LTR MaLR -10 368 316 1 1313 328 130 19 0 chr9 95549904 95549958 -28526214 - ORR1B2 LTR MaLR -9 358 304 1 1313 339 121 40 0 chr9 95549957 95550058 -28526114 - ORR1A4 LTR MaLR -10 368 269 1 1313 1079 150 219 10 chr9 95550062 95550352 -28525820 - ORR1A4 LTR MaLR -18 356 1 1 1313 4545 247 56 93 chr9 95550352 95550422 -28525750 + Lx7 LINE L1 3403 3472 -2408 1 1313 957 98 8 0 chr9 95550422 95550554 -28525618 + B1_Mus1 SINE Alu 1 133 -15 1 1313 4545 247 56 93 chr9 95550554 95550967 -28525205 + Lx7 LINE L1 3473 3893 -1987 1 1313 2387 102 6 0 chr9 95550967 95551292 -28524880 + ORR1A2 LTR MaLR 1 327 0 1 164 4545 247 56 93 chr9 95551292 95552073 -28524099 + Lx7 LINE L1 3894 4623 -1257 1 1314 366 23 0 0 chr9 95552073 95552116 -28524056 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1314 4545 247 56 93 chr9 95552116 95552662 -28523510 + Lx7 LINE L1 4624 5147 -733 1 1314 494 206 0 0 chr9 95552656 95552748 -28523424 + Lx7 LINE L1 5698 5789 -1907 1 1314 21 36 0 0 chr9 95552748 95552776 -28523396 + AT_rich Low_complexity Low_complexity 1 28 0 1 1314 809 195 30 24 chr9 95552957 95553125 -28523047 - ID_B1 SINE B4 0 224 56 1 1314 377 262 85 51 chr9 95553156 95553314 -28522858 - L2 LINE L2 -600 2819 2655 1 1314 468 51 0 0 chr9 95553314 95553373 -28522799 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1314 377 262 85 51 chr9 95553373 95553391 -28522781 - L2 LINE L2 -765 2654 2637 1 1314 223 148 0 54 chr9 95553557 95553650 -28522522 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1314 1129 88 0 0 chr9 95554264 95554411 -28521761 + B1_Mm SINE Alu 1 147 0 1 1314 913 146 0 17 chr9 95554422 95554603 -28521569 + GA-rich Low_complexity Low_complexity 3 180 0 1 1314 609 262 0 26 chr9 95554613 95554766 -28521406 + B1F1 SINE Alu 1 149 0 1 1314 794 332 73 3 chr9 95554788 95555156 -28521016 + Charlie25 DNA MER1_type 1810 2203 -321 1 1314 869 250 9 28 chr9 95555220 95555438 -28520734 + B3 SINE B2 3 216 0 1 1314 2649 170 32 2 chr9 95555705 95556206 -28519966 - RMER20A LTR ERVK 0 516 1 1 1314 210 258 86 57 chr9 95556290 95556360 -28519812 + ID4_ SINE ID 6 77 -6 1 1314 741 237 11 17 chr9 95556582 95556762 -28519410 - B3A SINE B2 -19 179 1 1 1314 1004 213 34 0 chr9 95557035 95557242 -28518930 - B3 SINE B2 -2 214 1 1 1314 233 243 37 27 chr9 95557367 95557449 -28518723 - MTEb LTR MaLR -23 356 281 1 1314 267 286 0 0 chr9 95557871 95557941 -28518231 + ID SINE ID 1 70 -154 1 1314 725 161 8 0 chr9 95558032 95558162 -28518010 - B1_Mus1 SINE Alu -7 141 11 1 1314 248 0 31 0 chr9 95558170 95558202 -28517970 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1314 947 134 0 32 chr9 95558771 95558925 -28517247 - B1_Mur3 SINE Alu 0 149 1 1 1314 1250 131 80 10 chr9 95558956 95559157 -28517015 - B3 SINE B2 0 216 2 1 1314 254 333 19 0 chr9 95559157 95559265 -28516907 + L1MB7 LINE L1 5334 5443 -741 1 1314 661 226 213 20 chr9 95559346 95559590 -28516582 + B4A SINE B4 2 292 0 1 1314 387 106 0 0 chr9 95559601 95559667 -28516505 + (CAGAGA)n Simple_repeat Simple_repeat 6 71 0 1 1314 1296 290 112 18 chr9 95559679 95560276 -28515896 + L1MB7 LINE L1 5532 6184 0 1 1314 432 0 0 0 chr9 95560853 95560901 -28515271 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 1 1314 2620 157 96 28 chr9 95560957 95561489 -28514683 + RLTR20D LTR ERVK 1 568 0 1 1314 600 157 37 9 chr9 95561489 95561582 -28514590 - B3 SINE B2 -120 96 1 1 1314 314 231 12 49 chr9 95561594 95561676 -28514496 - PB1D10 SINE Alu -8 109 31 1 1314 189 0 0 0 chr9 95561682 95561703 -28514469 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1314 374 239 162 18 chr9 95561704 95561815 -28514357 - B1F2 SINE Alu -5 144 18 1 1314 474 254 124 64 chr9 95562566 95562831 -28513341 + B4 SINE B4 2 282 -10 1 1314 755 210 7 3 chr9 95562853 95563135 -28513037 + CT-rich Low_complexity Low_complexity 1 283 0 1 1314 603 231 13 47 chr9 95564144 95564294 -28511878 + B4 SINE B4 148 292 0 1 1314 240 290 0 0 chr9 95564355 95564462 -28511710 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 1 1314 602 148 0 0 chr9 95565698 95565799 -28510373 + URR1B DNA MER1_type 39 139 -86 1 1314 1711 201 117 8 chr9 95565870 95566246 -28509926 + MTD LTR MaLR 3 419 0 1 1314 212 241 0 36 chr9 95567244 95567300 -28508872 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 1 1314 185 286 0 18 chr9 95567302 95567359 -28508813 - L2b LINE L2 -209 3166 3111 1 1314 192 216 0 0 chr9 95567923 95567974 -28508198 + GA-rich Low_complexity Low_complexity 4 54 0 1 1314 763 278 9 14 chr9 95568821 95569033 -28507139 + ID_B1 SINE B4 5 215 -9 1 1314 306 0 0 0 chr9 95569949 95569983 -28506189 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1314 691 112 17 25 chr9 95569983 95570102 -28506070 - B1_Mus2 SINE Alu -9 138 21 1 1314 1157 27 0 0 chr9 95570815 95570961 -28505211 + B2_Mm1a SINE B2 1 146 -47 1 1314 309 51 0 0 chr9 95571036 95571075 -28505097 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1314 265 343 0 0 chr9 95571956 95572026 -28504146 + ID4_ SINE ID 3 72 -11 1 1314 908 200 43 24 chr9 95573254 95573464 -28502708 + B3 SINE B2 1 214 -2 1 1314 234 33 0 0 chr9 95573768 95573798 -28502374 + L1P5 LINE L1 5400 5429 -727 1 1314 544 139 288 31 chr9 95573824 95573987 -28502185 + B3 SINE B2 1 205 -11 1 1314 2626 171 13 46 chr9 95574272 95574817 -28501355 - RLTR11A2 LTR ERVK 0 527 1 1 1314 1571 189 76 55 chr9 95574895 95575276 -28500896 + MTD LTR MaLR 1 389 -30 1 1314 189 0 0 0 chr9 95575279 95575300 -28500872 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1314 870 162 41 21 chr9 95575489 95575634 -28500538 - B1_Mur2 SINE Alu 0 149 2 1 1314 245 195 104 0 chr9 95577546 95577623 -28498549 + HAL1b LINE L1 1889 1973 -36 1 1314 533 229 182 42 chr9 95577669 95577824 -28498348 - B4 SINE B4 -2 290 112 1 1314 378 0 0 0 chr9 95577824 95577866 -28498306 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1314 533 229 182 42 chr9 95577866 95577924 -28498248 - B4 SINE B4 -181 111 49 1 1314 1142 82 0 0 chr9 95578091 95578237 -28497935 + B1_Mm SINE Alu 2 147 0 1 1314 328 280 119 8 chr9 95578455 95578581 -28497591 + ID_B1 SINE B4 82 221 -3 1 1314 303 211 0 0 chr9 95579034 95579124 -28497048 + CT-rich Low_complexity Low_complexity 2 91 0 1 1314 661 158 405 0 chr9 95579607 95579765 -28496407 - URR1A DNA MER1_type 0 226 5 1 1314 387 0 0 0 chr9 95579809 95579852 -28496320 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1314 1199 203 0 0 chr9 95579852 95580059 -28496113 - B3 SINE B2 -9 207 1 1 1314 360 111 0 0 chr9 95581422 95581476 -28494696 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1314 506 252 99 26 chr9 95581642 95581874 -28494298 - L1MA9 LINE L1 -5 6307 6059 1 1314 2187 141 3 24 chr9 95582176 95582555 -28493617 - MTB_Mm LTR MaLR -36 371 1 1 1314 303 20 78 0 chr9 95582952 95583003 -28493169 + (TTTTTG)n Simple_repeat Simple_repeat 2 56 0 1 1314 258 0 71 0 chr9 95583309 95583351 -28492821 + (TGGGGG)n Simple_repeat Simple_repeat 3 47 0 1 1314 22 0 0 0 chr9 95583624 95583646 -28492526 + AT_rich Low_complexity Low_complexity 1 22 0 1 1314 285 75 0 0 chr9 95583674 95583714 -28492458 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1314 445 315 0 46 chr9 95583716 95583869 -28492303 - RSINE1 SINE B4 -16 149 4 1 1314 1102 66 0 0 chr9 95584386 95584523 -28491649 + B1_Mus1 SINE Alu 1 137 -11 1 1314 519 17 0 0 chr9 95584523 95584583 -28491589 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1314 387 270 0 91 chr9 95585350 95585525 -28490647 + B4 SINE B4 4 162 -130 1 1314 247 266 196 27 chr9 95586850 95586962 -28489210 + MIRb SINE MIR 31 161 -107 1 1314 486 284 47 6 chr9 95587533 95587703 -28488469 - L1MA5 LINE L1 -1 6299 6123 1 1314 319 284 28 63 chr9 95587712 95587855 -28488317 + RSINE1 SINE B4 1 138 -27 1 1314 25 0 0 0 chr9 95587859 95587884 -28488288 + AT_rich Low_complexity Low_complexity 1 25 0 1 1314 204 40 0 0 chr9 95588021 95588046 -28488126 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1314 1146 82 0 0 chr9 95588046 95588182 -28487990 - B1_Mus1 SINE Alu -10 138 3 1 1314 351 0 0 0 chr9 95588331 95588370 -28487802 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1314 348 154 64 0 chr9 95589689 95589767 -28486405 + B3 SINE B2 2 84 -132 1 1314 2546 113 59 3 chr9 95589835 95590208 -28485964 + ORR1B1 LTR MaLR 1 394 0 1 1314 786 187 281 61 chr9 95590604 95590842 -28485330 - MTD LTR MaLR -16 403 114 1 1314 1173 175 0 46 chr9 95590843 95591059 -28485113 + B3 SINE B2 6 211 -5 1 1314 792 192 97 52 chr9 95591222 95591491 -28484681 - Lx7 LINE L1 -206 7490 7210 1 1314 867 242 110 51 chr9 95591498 95591816 -28484356 - RCHARR1 DNA MER1_type -619 355 19 1 1314 1401 219 159 8 chr9 95591816 95592180 -28483992 - MTC LTR MaLR -2 419 1 2 1314 867 242 110 51 chr9 95592180 95592196 -28483976 - RCHARR1 DNA MER1_type -956 18 1 1 1314 999 103 0 0 chr9 95592657 95592803 -28483369 + (CA)n Simple_repeat Simple_repeat 1 146 0 2 1314 932 179 11 6 chr9 95592820 95593000 -28483172 + URR1B DNA MER1_type 45 225 0 2 1314 230 0 0 0 chr9 95593812 95593870 -28482302 - L1Md_A LINE L1 0 6582 6549 2 1314 253 254 0 0 chr9 95597708 95597770 -28478402 + PB1D9 SINE Alu 23 85 -65 2 1314 697 254 53 124 chr9 95597803 95598086 -28478086 + B4A SINE B4 26 288 -4 2 1314 330 251 27 28 chr9 95598140 95598299 -28477873 + L1M5 LINE L1 3137 3298 -2842 2 1314 1066 173 96 5 chr9 95598299 95598497 -28477675 + B3 SINE B2 1 216 0 2 1314 330 228 0 0 chr9 95598720 95598821 -28477351 + CT-rich Low_complexity Low_complexity 1 101 0 2 1314 578 331 40 49 chr9 95598823 95599252 -28476920 + L1M5 LINE L1 3331 3755 -2391 2 1314 306 307 13 103 chr9 95599418 95599574 -28476598 - RMER12 LTR ERVK -471 851 710 2 1314 638 233 16 74 chr9 95599670 95599860 -28476312 + LTR87 LTR ERVL? 354 532 -92 2 1314 391 224 61 10 chr9 95599886 95599985 -28476187 + ID_B1 SINE B4 1 104 -120 2 1314 1410 131 0 0 chr9 95600071 95600293 -28475879 + ORR1A4 LTR MaLR 1 222 -107 2 1314 274 250 83 0 chr9 95600446 95600530 -28475642 + RSINE1 SINE B4 73 163 -2 2 1314 2369 70 35 3 chr9 95600666 95600982 -28475190 - ORR1A3 LTR MaLR 0 326 1 2 1314 262 277 128 43 chr9 95601006 95601123 -28475049 - PB1 SINE Alu 0 127 1 2 1314 304 143 167 13 chr9 95601667 95601745 -28474427 - ORR1D1 LTR MaLR -284 90 1 2 1314 1564 243 39 43 chr9 95601834 95602295 -28473877 - Lx8 LINE L1 -149 7324 6866 2 1314 342 235 139 12 chr9 95602328 95602414 -28473758 - Lx8 LINE L1 -841 6632 6536 2 1314 318 267 117 122 chr9 95602429 95602634 -28473538 - B4A SINE B4 -76 216 13 2 1314 5190 118 32 2 chr9 95602814 95602915 -28473257 - RMER12 LTR ERVK -413 909 807 2 1314 375 23 0 0 chr9 95602915 95602959 -28473213 + (TATG)n Simple_repeat Simple_repeat 1 44 0 2 1314 5190 118 32 2 chr9 95602959 95603734 -28472438 - RMER12 LTR ERVK -516 806 8 2 1314 600 136 64 0 chr9 95604020 95604130 -28472042 - B1_Mur4 SINE Alu 0 150 34 2 1314 342 317 30 0 chr9 95604207 95604308 -28471864 - B1F2 SINE Alu -6 143 40 2 1314 237 33 0 0 chr9 95604420 95604450 -28471722 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1314 336 196 84 32 chr9 95604547 95604642 -28471530 + MLT2F LTR ERVL 1 100 -563 2 1314 234 286 206 11 chr9 95604684 95604776 -28471396 + MLT2F LTR ERVL 213 322 -341 2 1314 567 266 30 37 chr9 95605056 95605220 -28470952 - RSINE1 SINE B4 0 165 3 2 1314 1119 178 38 24 chr9 95605250 95605463 -28470709 + B3 SINE B2 1 216 0 2 1314 27 0 0 0 chr9 95606405 95606432 -28469740 + AT_rich Low_complexity Low_complexity 1 27 0 2 1314 1013 134 0 0 chr9 95606500 95606642 -28469530 - B1_Mus2 SINE Alu -5 142 1 2 1314 241 313 0 0 chr9 95607429 95607496 -28468676 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 2 1314 452 267 143 11 chr9 95607813 95608078 -28468094 + MER58D DNA MER1_type 64 363 -23 2 1314 211 292 122 9 chr9 95608424 95608531 -28467641 + B1F2 SINE Alu 10 128 -21 2 1314 26 50 0 0 chr9 95608958 95608998 -28467174 + AT_rich Low_complexity Low_complexity 1 40 0 2 1314 27 49 0 0 chr9 95609367 95609408 -28466764 + AT_rich Low_complexity Low_complexity 1 41 0 2 1314 921 213 91 0 chr9 95609436 95609633 -28466539 - B3 SINE B2 -1 215 1 2 1314 212 286 196 25 chr9 95609690 95609848 -28466324 + L2 LINE L2 2755 2939 -480 2 1314 336 180 181 53 chr9 95611050 95611144 -28465028 - PB1D10 SINE Alu -2 115 10 2 1314 246 305 0 0 chr9 95611093 95611152 -28465020 - ID_B1 SINE B4 -83 141 83 2 1314 4049 80 0 0 chr9 95611179 95611706 -28464466 + L1Md_F2 LINE L1 6055 6581 -1 2 1314 1112 55 0 46 chr9 95611761 95611914 -28464258 - B1_Mus2 SINE Alu -1 146 1 2 1314 347 147 92 46 chr9 95612699 95612825 -28463347 - B3 SINE B2 0 216 1 2 1314 724 281 88 42 chr9 95614037 95614275 -28461897 + B4A SINE B4 2 250 -42 2 1314 388 289 53 49 chr9 95614405 95614649 -28461523 + L1M3 LINE L1 3316 3560 -2580 2 1314 3975 190 27 29 chr9 95614677 95615553 -28460619 + Lx5 LINE L1 5959 6833 -217 2 1314 792 226 72 17 chr9 95615553 95615733 -28460439 + MTD LTR MaLR 216 405 -14 2 1314 267 169 84 0 chr9 95615754 95615825 -28460347 + MTD-int LTR MaLR 1 77 -1181 2 1314 608 266 79 25 chr9 95615851 95616217 -28459955 - L1MEc LINE L1 -4115 2285 1900 2 1314 207 100 0 0 chr9 95617046 95617076 -28459096 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 2 1314 310 357 69 14 chr9 95617577 95617761 -28458411 + MIRc SINE MIR 64 251 -17 2 1314 904 253 79 4 chr9 95618554 95618808 -28457364 - B4A SINE B4 -16 276 4 2 1314 260 308 159 45 chr9 95618839 95619084 -28457088 + L2 LINE L2 2349 2621 -798 2 1314 750 285 52 39 chr9 95619475 95619792 -28456380 + RLTR18B LTR ERVK 186 491 -21 2 1314 1113 244 36 53 chr9 95619822 95619900 -28456272 + B4A SINE B4 17 95 -197 2 1314 2680 145 43 28 chr9 95619900 95620410 -28455762 - RLTR28 LTR ERVL -4 520 3 2 1314 1113 244 36 53 chr9 95620410 95620612 -28455560 + B4A SINE B4 96 292 0 2 1314 615 297 105 30 chr9 95620638 95620709 -28455463 + B4A SINE B4 2 78 -214 2 1314 471 18 0 0 chr9 95620709 95620765 -28455407 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1314 615 297 105 30 chr9 95620765 95620926 -28455246 + B4A SINE B4 79 255 -37 2 1314 2637 163 118 4 chr9 95620926 95621442 -28454730 + RMER15 LTR ERVL 1 575 0 2 1314 615 297 105 30 chr9 95621442 95621475 -28454697 + B4A SINE B4 256 287 -5 2 1314 186 43 0 0 chr9 95621496 95621519 -28454653 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1314 399 323 65 12 chr9 95622041 95622210 -28453962 + MIR SINE MIR 13 190 -72 2 1314 300 284 27 0 chr9 95622544 95622618 -28453554 - ID4 SINE ID -6 77 2 2 1314 389 204 114 0 chr9 95622634 95622722 -28453450 - PB1D10 SINE Alu -10 107 10 2 1314 708 293 24 5 chr9 95622752 95622958 -28453214 - B3 SINE B2 -6 210 1 2 1314 27 29 0 0 chr9 95623029 95623063 -28453109 + AT_rich Low_complexity Low_complexity 1 34 0 2 1314 263 355 45 91 chr9 95623113 95623311 -28452861 + MLT1G LTR MaLR 11 199 -392 2 1314 2222 117 6 0 chr9 95624007 95624332 -28451840 - ORR1A2 LTR MaLR 0 327 1 2 1314 551 259 73 7 chr9 95625225 95625361 -28450811 - B1_Mur2 SINE Alu 0 149 5 2 1314 372 270 18 18 chr9 95625388 95625501 -28450671 - PB1D10 SINE Alu -4 113 1 2 1314 180 0 0 0 chr9 95625550 95625570 -28450602 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1314 1152 55 7 0 chr9 95625574 95625720 -28450452 - B1_Mus2 SINE Alu 0 147 1 2 1314 21 0 0 0 chr9 95625961 95625982 -28450190 + AT_rich Low_complexity Low_complexity 1 21 0 2 1314 438 20 0 0 chr9 95626041 95626092 -28450080 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1314 1396 110 284 0 chr9 95626092 95626346 -28449826 + ORR1A3 LTR MaLR 1 326 0 2 1314 186 71 0 0 chr9 95627004 95627032 -28449140 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1314 968 282 126 35 chr9 95627312 95627885 -28448287 + Lx9 LINE L1 6846 7470 -174 2 1314 225 237 175 0 chr9 95628906 95629003 -28447169 - L1MC LINE L1 -2058 5824 5711 2 1314 358 292 83 0 chr9 95629463 95629559 -28446613 + PB1 SINE Alu 21 124 -3 2 1314 313 331 4 12 chr9 95629612 95629706 -28446466 - PB1D10 SINE Alu -21 99 4 2 1314 375 267 118 7 chr9 95629812 95629948 -28446224 - RCHARR1 DNA MER1_type -770 204 54 2 1314 1079 88 0 20 chr9 95630912 95631050 -28445122 + B1_Mus1 SINE Alu 1 138 -10 2 1314 198 0 0 0 chr9 95631050 95631072 -28445100 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2 1314 1079 88 0 20 chr9 95631072 95631084 -28445088 + B1_Mus1 SINE Alu 139 148 0 2 1314 340 343 0 47 chr9 95631254 95631361 -28444811 - PB1D10 SINE Alu -10 107 6 2 1314 469 223 11 0 chr9 95631657 95631751 -28444421 + B3 SINE B2 2 96 -120 2 1314 311 304 35 62 chr9 95632036 95632180 -28443992 + B1F2 SINE Alu 3 142 -7 2 1314 21 89 0 0 chr9 95632766 95632822 -28443350 + AT_rich Low_complexity Low_complexity 1 56 0 2 1314 28 48 0 0 chr9 95632894 95632936 -28443236 + AT_rich Low_complexity Low_complexity 1 42 0 2 1314 185 97 0 31 chr9 95633247 95633279 -28442893 - MIR SINE MIR -76 132 102 2 1314 321 194 147 39 chr9 95633520 95633649 -28442523 - L1ME4a LINE L1 -12 6112 5970 2 1314 228 317 7 34 chr9 95633877 95634024 -28442148 - L1M5 LINE L1 -403 5721 5579 2 1314 24 0 0 0 chr9 95634554 95634578 -28441594 + AT_rich Low_complexity Low_complexity 1 24 0 2 1314 747 254 44 0 chr9 95635448 95635653 -28440519 - B3 SINE B2 -2 214 1 2 1314 375 78 0 0 chr9 95635685 95635736 -28440436 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1314 552 275 30 0 chr9 95635756 95635887 -28440285 + ID_B1 SINE B4 82 216 -8 2 1314 36 77 0 0 chr9 95636213 95636291 -28439881 + AT_rich Low_complexity Low_complexity 1 78 0 2 1314 351 307 5 114 chr9 95636330 95636350 -28439822 - B4A SINE B4 -58 234 218 2 1314 375 23 0 0 chr9 95636350 95636394 -28439778 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2 1314 847 180 0 7 chr9 95636395 95636535 -28439637 - B1_Mur2 SINE Alu -10 139 1 2 1314 556 279 0 52 chr9 95636535 95636557 -28439615 - ID_B1 SINE B4 -75 216 64 2 1314 1335 65 54 11 chr9 95636743 95636929 -28439243 - B2_Mm2 SINE B2 0 195 2 2 1314 22 56 0 0 chr9 95637018 95637054 -28439118 + AT_rich Low_complexity Low_complexity 1 36 0 2 1314 251 286 100 0 chr9 95639306 95639376 -28436796 - PB1D10 SINE Alu -9 108 32 2 1314 221 361 124 0 chr9 95640639 95640736 -28435436 + MIR SINE MIR 16 124 -84 2 1314 1033 239 5 19 chr9 95640805 95641018 -28435154 - B3 SINE B2 -5 211 2 2 1314 344 317 38 9 chr9 95641120 95641225 -28434947 - B3A SINE B2 -90 108 1 3 1314 183 100 0 0 chr9 95641237 95641267 -28434905 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3 1314 406 256 186 67 chr9 95641434 95641627 -28434545 - MER20 DNA MER1_type -1 218 3 3 1314 446 317 108 25 chr9 95641868 95642105 -28434067 + MIRc SINE MIR 3 253 -15 3 1314 258 213 53 0 chr9 95642173 95642248 -28433924 - Tigger15a DNA TcMar -56 659 581 3 1314 240 111 0 0 chr9 95642257 95642293 -28433879 + (CATA)n Simple_repeat Simple_repeat 4 39 0 3 1314 514 41 27 0 chr9 95642718 95642791 -28433381 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1314 30 27 0 0 chr9 95643401 95643438 -28432734 + AT_rich Low_complexity Low_complexity 1 37 0 3 1314 205 280 0 0 chr9 95643486 95643536 -28432636 + A-rich Low_complexity Low_complexity 5 54 0 3 1314 188 213 16 0 chr9 95644309 95644370 -28431802 + CT-rich Low_complexity Low_complexity 1 62 0 3 1314 279 54 0 0 chr9 95644374 95644411 -28431761 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1314 21 0 0 0 chr9 95645622 95645643 -28430529 + AT_rich Low_complexity Low_complexity 1 21 0 3 1314 462 287 103 48 chr9 95645677 95645948 -28430224 - B4A SINE B4 -4 288 3 3 1314 1010 313 58 24 chr9 95646160 95646612 -28429560 + MER67A LTR ERV1 5 471 -72 3 1314 631 253 168 53 chr9 95646645 95646949 -28429223 - MER58B DNA MER1_type -2 339 1 3 1314 706 161 0 35 chr9 95647275 95647391 -28428781 + B1F SINE Alu 9 120 -29 3 1314 1205 55 0 0 chr9 95648074 95648220 -28427952 + B1_Mus1 SINE Alu 2 147 -1 3 1314 213 39 0 0 chr9 95649675 95649701 -28426471 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1314 200 205 0 0 chr9 95650178 95650217 -28425955 + GA-rich Low_complexity Low_complexity 2 40 0 3 1314 22 88 0 0 chr9 95650450 95650507 -28425665 + GC_rich Low_complexity Low_complexity 1 57 0 3 1314 571 243 89 14 chr9 95652719 95652865 -28423307 + RSINE1 SINE B4 3 159 -6 3 1314 225 0 0 0 chr9 95654921 95654946 -28421226 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1314 275 312 19 83 chr9 95655948 95656105 -28420067 + MLT1L LTR MaLR 12 158 -452 3 1314 1207 200 0 0 chr9 95656191 95656386 -28419786 + B3 SINE B2 3 197 -19 3 1314 662 157 70 63 chr9 95656429 95656572 -28419600 + B1_Mur3 SINE Alu 6 149 0 3 1314 423 180 18 9 chr9 95656594 95656706 -28419466 + GA-rich Low_complexity Low_complexity 2 114 0 3 1314 1194 36 0 0 chr9 95658038 95658177 -28417995 + B1_Mm SINE Alu 2 140 -7 3 1314 225 94 0 0 chr9 95658179 95658211 -28417961 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1314 475 299 66 33 chr9 95658422 95658605 -28417567 - MIRb SINE MIR -17 251 63 3 1314 450 0 0 0 chr9 95659864 95659914 -28416258 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1314 265 258 0 75 chr9 95660270 95660337 -28415835 - ID4 SINE ID 0 83 22 3 1314 1126 109 10 103 chr9 95660864 95661068 -28415104 + B2_Mm1t SINE B2 2 186 -7 3 1314 1287 267 16 50 chr9 95662904 95663286 -28412886 + RMER15 LTR ERVL 202 570 -5 3 1314 239 250 16 0 chr9 95663339 95663403 -28412769 + ID4_ SINE ID 15 79 -4 3 1314 533 171 106 50 chr9 95663482 95663643 -28412529 + ORR1D1 LTR MaLR 1 159 -211 3 1314 1095 174 137 24 chr9 95663692 95663986 -28412186 + ORR1C2 LTR MaLR 44 379 -5 3 1314 444 82 0 0 chr9 95664193 95664254 -28411918 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1314 385 308 58 59 chr9 95664266 95664506 -28411666 - B4A SINE B4 -17 207 2 3 1314 649 241 95 1 chr9 95664565 95664742 -28411430 - B3 SINE B2 -4 194 1 3 1314 231 88 0 0 chr9 95664889 95664923 -28411249 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1314 25 0 0 0 chr9 95664925 95664950 -28411222 + AT_rich Low_complexity Low_complexity 1 25 0 3 1314 451 238 19 19 chr9 95665310 95665413 -28410759 - B4A SINE B4 -187 105 3 3 1314 312 376 0 0 chr9 95666427 95666661 -28409511 + (CATATA)n Simple_repeat Simple_repeat 1 234 0 3 1314 297 373 6 0 chr9 95666679 95666840 -28409332 + (CATATA)n Simple_repeat Simple_repeat 4 165 0 3 1314 303 376 0 0 chr9 95666894 95667056 -28409116 + (CATATA)n Simple_repeat Simple_repeat 4 165 0 3 1314 366 23 0 0 chr9 95667316 95667359 -28408813 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1314 342 0 0 0 chr9 95668056 95668094 -28408078 + (TTA)n Simple_repeat Simple_repeat 1 38 0 3 1314 188 318 35 12 chr9 95671782 95671868 -28404304 - MIRb SINE MIR -172 96 9 3 1314 35 63 0 0 chr9 95672581 95672644 -28403528 + AT_rich Low_complexity Low_complexity 1 63 0 3 1314 1163 176 24 9 chr9 95674303 95674515 -28401657 + B3 SINE B2 1 215 -1 3 1314 364 187 40 33 chr9 95675042 95675156 -28401016 + PB1D10 SINE Alu 2 120 0 3 1314 342 295 86 46 chr9 95675524 95675698 -28400474 + L1MB4 LINE L1 5995 6175 -5 3 1314 196 313 53 53 chr9 95675991 95676160 -28400012 + L2b LINE L2 3018 3186 -189 3 1314 245 239 0 0 chr9 95676511 95676557 -28399615 + polypurine Low_complexity Low_complexity 2 47 0 3 1314 1074 144 0 0 chr9 95676557 95676737 -28399435 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1314 770 81 9 0 chr9 95676746 95676857 -28399315 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 3 1314 438 194 75 11 chr9 95678060 95678154 -28398018 - RSINE1 SINE B4 -62 103 4 3 1314 391 283 70 8 chr9 95678294 95678422 -28397750 + ID_B1 SINE B4 82 217 -7 3 1314 187 268 0 35 chr9 95678673 95678731 -28397441 + L2b LINE L2 3332 3387 0 3 1314 366 299 85 57 chr9 95679959 95680207 -28395965 + MER110A LTR ERV1 214 468 0 3 1314 271 271 186 0 chr9 95680492 95680562 -28395610 - RSINE1 SINE B4 -80 85 3 3 1314 210 298 0 0 chr9 95680576 95680633 -28395539 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1314 754 296 39 14 chr9 95680634 95680915 -28395257 - B4 SINE B4 -2 290 3 3 1314 224 164 328 0 chr9 95680963 95681030 -28395142 + BC1_Mm scRNA scRNA 1 89 -63 3 1314 361 294 0 0 chr9 95682105 95682190 -28393982 - B1_Mur3 SINE Alu -64 85 1 3 1314 277 315 0 0 chr9 95682125 95682198 -28393974 - B4 SINE B4 -142 150 78 3 1314 197 185 0 36 chr9 95682471 95682527 -28393645 + GA-rich Low_complexity Low_complexity 3 56 0 3 1315 792 192 14 7 chr9 95683244 95683391 -28392781 + B1_Mus1 SINE Alu 1 148 0 3 1315 320 0 25 0 chr9 95683613 95683653 -28392519 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1315 31 0 0 0 chr9 95683740 95683771 -28392401 + AT_rich Low_complexity Low_complexity 1 31 0 3 1315 806 229 27 5 chr9 95683806 95683990 -28392182 + B3 SINE B2 1 188 -28 3 1315 351 0 0 0 chr9 95683990 95684029 -28392143 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1315 181 0 33 33 chr9 95684054 95684084 -28392088 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3 1315 263 242 30 15 chr9 95685513 95685580 -28390592 + ID4 SINE ID 3 70 -13 3 1315 205 330 143 8 chr9 95686497 95686616 -28389556 + L2 LINE L2 2775 2909 -510 3 1315 933 185 103 15 chr9 95687602 95687805 -28388367 + URR1B DNA MER1_type 3 223 -2 3 1315 362 135 26 39 chr9 95687805 95687863 -28388309 + URR1B DNA MER1_type 169 225 0 3 1315 435 137 0 0 chr9 95687863 95687912 -28388260 + URR1B DNA MER1_type 174 222 -3 3 1315 1242 232 157 0 chr9 95687951 95688270 -28387902 - ORR1D2 LTR MaLR -1 369 1 3 1315 1596 32 11 0 chr9 95688502 95688688 -28387484 + B2_Mm1a SINE B2 1 188 -5 3 1315 1198 215 0 0 chr9 95688705 95688910 -28387262 + B3 SINE B2 1 205 -11 3 1315 260 270 27 99 chr9 95688928 95689039 -28387133 + MT2B LTR ERVL 155 257 -344 3 1315 764 185 0 0 chr9 95688947 95689082 -28387090 + B1_Mur4 SINE Alu 14 148 -2 3 1315 270 0 0 0 chr9 95689083 95689113 -28387059 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1315 511 259 56 0 chr9 95689528 95689671 -28386501 + MTEb LTR MaLR 2 152 -227 3 1315 608 206 6 23 chr9 95690318 95690492 -28385680 + GA-rich Low_complexity Low_complexity 1 171 0 3 1315 463 304 92 52 chr9 95690654 95691324 -28384848 + L1MB2 LINE L1 1907 2666 -3916 3 1315 713 144 38 0 chr9 95691348 95691480 -28384692 + B1_Mus2 SINE Alu 1 137 -10 3 1315 218 193 18 0 chr9 95691577 95691634 -28384538 + GA-rich Low_complexity Low_complexity 6 63 0 3 1315 251 338 36 32 chr9 95691757 95691977 -28384195 + L1_Rod LINE L1 2204 2424 -3423 3 1315 477 148 0 0 chr9 95691987 95692068 -28384104 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1315 243 0 0 0 chr9 95692068 95692095 -28384077 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1315 703 306 29 101 chr9 95692103 95692332 -28383840 + L1MB2 LINE L1 5116 5326 -1516 3 1315 207 0 0 0 chr9 95692332 95692355 -28383817 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1315 703 306 29 101 chr9 95692355 95692370 -28383802 + L1MB2 LINE L1 5327 5327 -1515 3 1315 1211 54 0 13 chr9 95692370 95692519 -28383653 - B1_Mus1 SINE Alu 0 148 2 3 1315 703 306 29 101 chr9 95692519 95692727 -28383445 + L1MB2 LINE L1 5327 5536 -1306 3 1315 737 317 147 28 chr9 95692798 95693432 -28382740 + L1MB2 LINE L1 6027 6735 -138 3 1315 4133 55 0 2 chr9 95693450 95693959 -28382213 - L1Md_F2 LINE L1 -2 6580 6073 3 1315 417 39 0 0 chr9 95695059 95695110 -28381062 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 3 1315 1572 52 5 0 chr9 95695129 95695320 -28380852 - B2_Mm1a SINE B2 -1 192 1 3 1315 372 193 0 88 chr9 95695847 95696040 -28380132 + (AGCTG)n Simple_repeat Simple_repeat 3 178 0 3 1315 759 247 12 6 chr9 95696829 95697000 -28379172 + B3A SINE B2 9 180 -18 3 1315 557 233 9 0 chr9 95697425 95697541 -28378631 - PB1D10 SINE Alu 0 117 1 3 1315 32 26 0 0 chr9 95698019 95698058 -28378114 + AT_rich Low_complexity Low_complexity 1 39 0 3 1315 192 40 0 0 chr9 95698088 95698113 -28378059 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1315 207 88 0 0 chr9 95698265 95698299 -28377873 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 1315 745 160 23 15 chr9 95698300 95698433 -28377739 - B1_Mus2 SINE Alu -12 135 2 3 1315 183 80 0 0 chr9 95698791 95698816 -28377356 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1315 180 0 0 0 chr9 95698892 95698912 -28377260 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1315 1208 61 0 0 chr9 95698915 95699063 -28377109 - B1_Mus1 SINE Alu 0 148 1 4 1315 311 266 114 0 chr9 95699111 95699190 -28376982 - B1_Mus2 SINE Alu -59 88 1 4 1315 256 276 11 84 chr9 95699240 95699335 -28376837 + RSINE1 SINE B4 78 165 0 4 1315 231 231 68 111 chr9 95699301 95699418 -28376754 - RMER12 LTR ERVK -462 860 749 4 1315 388 138 85 0 chr9 95699418 95699512 -28376660 + Lx9 LINE L1 7543 7644 0 4 1315 926 196 10 45 chr9 95699926 95700124 -28376048 - B2_Mm2 SINE B2 -3 192 2 4 1315 1223 27 7 0 chr9 95700528 95700674 -28375498 + B1_Mm SINE Alu 1 147 0 4 1315 261 118 0 0 chr9 95700674 95700725 -28375447 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1315 344 302 2 27 chr9 95700843 95701020 -28375152 + L1MA4 LINE L1 5780 5950 -1523 4 1315 671 224 74 10 chr9 95702502 95702705 -28373467 + ORR1E LTR MaLR 144 359 0 4 1315 387 274 112 40 chr9 95703193 95703345 -28372827 + RSINE1 SINE B4 3 165 0 4 1315 423 0 0 0 chr9 95703349 95703396 -28372776 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1315 241 287 31 31 chr9 95705612 95705709 -28370463 - L1M1 LINE L1 -397 5903 5807 4 1315 562 233 64 20 chr9 95706347 95706536 -28369636 - Lx5 LINE L1 -808 6250 6045 4 1315 25 31 0 0 chr9 95707367 95707399 -28368773 + AT_rich Low_complexity Low_complexity 1 32 0 4 1315 1114 170 187 8 chr9 95707817 95708094 -28368078 + MTD LTR MaLR 96 411 -8 4 1315 351 299 153 12 chr9 95708511 95708765 -28367407 - L1MEc LINE L1 -4076 2324 2035 4 1315 212 125 20 20 chr9 95708984 95709033 -28367139 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 4 1315 24 0 0 0 chr9 95709033 95709057 -28367115 + AT_rich Low_complexity Low_complexity 1 24 0 4 1315 23 54 0 0 chr9 95709166 95709203 -28366969 + AT_rich Low_complexity Low_complexity 1 37 0 4 1315 466 253 27 14 chr9 95709427 95709575 -28366597 - L1MEc LINE L1 -4846 1554 1405 4 1315 280 203 122 0 chr9 95709774 95709848 -28366324 + ID_B1 SINE B4 142 224 0 4 1315 210 71 0 0 chr9 95709975 95710003 -28366169 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1315 213 321 105 15 chr9 95710061 95710194 -28365978 - MIRc SINE MIR -115 153 9 4 1315 225 0 0 0 chr9 95710402 95710427 -28365745 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1315 280 286 110 0 chr9 95710490 95710581 -28365591 + B1F1 SINE Alu 9 109 -40 4 1315 324 0 0 0 chr9 95710770 95710806 -28365366 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1315 740 115 9 0 chr9 95710807 95710920 -28365252 - B1_Mus1 SINE Alu -13 135 22 4 1315 22 35 0 0 chr9 95710929 95710958 -28365214 + AT_rich Low_complexity Low_complexity 1 29 0 4 1315 799 293 35 21 chr9 95711236 95711522 -28364650 - B4A SINE B4 -2 290 1 4 1315 471 296 82 34 chr9 95712382 95712529 -28363643 + B3A SINE B2 1 154 -44 4 1315 423 0 0 0 chr9 95712538 95712585 -28363587 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1315 183 80 0 0 chr9 95712976 95713001 -28363171 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1315 794 245 34 24 chr9 95713001 95713206 -28362966 - B3 SINE B2 -9 207 1 4 1315 800 155 8 0 chr9 95713375 95713504 -28362668 + B3 SINE B2 1 130 -86 4 1315 22 0 0 0 chr9 95713521 95713543 -28362629 + AT_rich Low_complexity Low_complexity 1 22 0 4 1315 1473 68 21 0 chr9 95713792 95713983 -28362189 + B2_Mm2 SINE B2 1 195 0 4 1315 192 40 0 0 chr9 95714969 95714994 -28361178 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1315 414 314 47 66 chr9 95716507 95716763 -28359409 + L1ME1 LINE L1 5914 6164 -15 4 1315 1007 208 108 96 chr9 95716998 95717435 -28358737 - RMER10A LTR ERVL 0 442 1 4 1315 1267 196 129 39 chr9 95717487 95717821 -28358351 + MTC LTR MaLR 50 413 -8 4 1315 29 70 0 0 chr9 95718059 95718116 -28358056 + AT_rich Low_complexity Low_complexity 1 57 0 4 1315 649 188 50 21 chr9 95718483 95718504 -28357668 + B1_Mus2 SINE Alu 3 26 -121 4 1315 221 0 0 33 chr9 95718504 95718534 -28357638 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1315 1031 80 0 28 chr9 95718534 95718676 -28357496 - B1_Mus1 SINE Alu -10 138 1 4 1315 649 188 50 21 chr9 95718676 95718794 -28357378 + B1_Mus2 SINE Alu 27 146 -1 4 1315 21 0 0 0 chr9 95718902 95718923 -28357249 + AT_rich Low_complexity Low_complexity 1 21 0 4 1315 415 264 47 0 chr9 95719012 95719118 -28357054 + B3A SINE B2 1 111 -87 4 1315 467 275 0 8 chr9 95719573 95719694 -28356478 + PB1 SINE Alu 1 120 -7 4 1315 599 246 14 14 chr9 95719704 95719844 -28356328 + ID_B1 SINE B4 85 224 0 4 1315 237 33 0 0 chr9 95719847 95719877 -28356295 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1315 526 277 67 0 chr9 95720038 95720157 -28356015 + RSINE1 SINE B4 3 129 -36 4 1315 372 97 0 0 chr9 95720163 95720225 -28355947 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 1315 297 0 0 0 chr9 95720225 95720258 -28355914 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1315 539 241 188 17 chr9 95720335 95720575 -28355597 - B4A SINE B4 -10 282 2 4 1315 680 226 48 16 chr9 95721524 95721713 -28354459 - B3 SINE B2 -1 215 21 4 1315 297 118 0 0 chr9 95721766 95721817 -28354355 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 1315 315 325 192 19 chr9 95721851 95722174 -28353998 + MLT1E2 LTR MaLR 218 596 -31 4 1315 327 264 167 58 chr9 95722309 95722603 -28353569 - RMER17C LTR ERVK -45 365 40 4 1315 1099 137 21 32 chr9 95723734 95723922 -28352250 - B2_Mm2 SINE B2 -9 186 1 4 1315 562 164 27 0 chr9 95724507 95724615 -28351557 + MTC LTR MaLR 1 111 -310 4 1315 1099 153 84 0 chr9 95724615 95724817 -28351355 + URR1B DNA MER1_type 1 219 -6 4 1315 1713 177 38 9 chr9 95724764 95725130 -28351042 + MTC LTR MaLR 33 421 0 4 1315 274 250 121 35 chr9 95725203 95725344 -28350828 - ID_B1 SINE B4 -1 223 71 4 1315 669 274 74 23 chr9 95725532 95725749 -28350423 - MTEa LTR MaLR -56 323 96 4 1315 275 281 41 16 chr9 95726721 95726844 -28349328 + L1MC3 LINE L1 7382 7507 -278 4 1315 327 269 138 50 chr9 95727248 95727487 -28348685 + L1MC3 LINE L1 7464 7723 -62 4 1315 545 252 128 55 chr9 95727543 95727761 -28348411 + L1MB7 LINE L1 5434 5667 -517 4 1315 752 257 14 43 chr9 95727761 95727972 -28348200 + B3 SINE B2 1 205 -11 4 1315 217 162 0 0 chr9 95728338 95728375 -28347797 + B3 SINE B2 1 37 -179 4 1315 257 354 0 0 chr9 95728397 95728462 -28347710 + B3 SINE B2 118 182 -34 4 1315 456 184 192 54 chr9 95729125 95729292 -28346880 + L1MB7 LINE L1 5716 5905 -279 4 1315 237 246 53 0 chr9 95729324 95729381 -28346791 + ID_B1 SINE B4 86 145 -79 4 1315 5484 3 0 0 chr9 95729829 95730432 -28345740 + L1Md_A LINE L1 4984 5586 -297 4 1315 9105 7 0 0 chr9 95730432 95731428 -28344744 + L1Md_A LINE L1 5587 6582 0 4 1315 296 182 61 0 chr9 95731521 95731587 -28344585 + ID_B1 SINE B4 154 223 -1 4 1315 681 241 7 0 chr9 95731733 95731878 -28344294 - B1_Mm SINE Alu -1 146 1 4 1315 299 283 70 28 chr9 95733035 95733176 -28342996 - Tigger7 DNA MER2_type 0 2491 2345 4 1315 285 71 24 0 chr9 95733176 95733218 -28342954 + ORR1C2 LTR MaLR 1 43 -341 4 1315 569 175 0 0 chr9 95733215 95733312 -28342860 + ORR1C1 LTR MaLR 274 370 -8 4 1315 415 248 45 9 chr9 95733350 95733460 -28342712 + MER44D DNA MER2_type 7 120 -585 4 1315 276 352 172 0 chr9 95733471 95733616 -28342556 - Tigger7 DNA MER2_type -2188 303 134 4 1315 338 231 12 123 chr9 95733626 95733761 -28342411 + Tigger7 DNA MER2_type 2121 2240 -251 4 1315 363 262 260 8 chr9 95733761 95733888 -28342284 - RSINE1 SINE B4 -5 160 2 4 1315 338 231 12 123 chr9 95733888 95733915 -28342257 + Tigger7 DNA MER2_type 2241 2265 -226 4 1315 904 223 124 57 chr9 95734176 95734475 -28341697 - RMER5 LTR ERV1 -214 320 2 4 1315 777 279 189 91 chr9 95734550 95735185 -28340987 + MTE-int LTR MaLR 412 1108 -472 4 1315 235 215 30 15 chr9 95735172 95735238 -28340934 + MER5A DNA MER1_type 13 79 -110 4 1315 191 259 0 18 chr9 95735343 95735398 -28340774 + MER5A DNA MER1_type 136 189 0 4 1315 374 141 0 53 chr9 95735531 95735606 -28340566 - B1_Mus2 SINE Alu 0 147 77 4 1315 369 0 0 0 chr9 95735775 95735816 -28340356 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1315 216 94 132 0 chr9 95735816 95735869 -28340303 + (GTTTG)n Simple_repeat Simple_repeat 5 64 0 4 1315 1349 215 66 11 chr9 95736009 95736357 -28339815 + ORR1D1 LTR MaLR 1 367 -7 4 1315 351 256 0 53 chr9 95737235 95737330 -28338842 + RSINE1 SINE B4 8 97 -68 4 1315 399 259 26 69 chr9 95737561 95737677 -28338495 + B1F SINE Alu 33 143 -6 4 1315 465 253 0 0 chr9 95737586 95737681 -28338491 + ID_B1 SINE B4 128 222 -2 4 1315 315 203 0 0 chr9 95737683 95737752 -28338420 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1315 585 222 25 127 chr9 95738814 95739051 -28337121 - ID_B1 SINE B4 -7 217 5 4 1315 213 39 0 0 chr9 95739066 95739092 -28337080 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1315 567 259 0 7 chr9 95739357 95739493 -28336679 - RSINE1 SINE B4 -29 136 2 4 1315 370 193 24 0 chr9 95739620 95739703 -28336469 + BC1_Mm scRNA scRNA 8 92 -60 4 1315 858 119 0 0 chr9 95740471 95740605 -28335567 + (TCCC)n Simple_repeat Simple_repeat 4 137 0 4 1315 1016 144 15 49 chr9 95740628 95740833 -28335339 - B3 SINE B2 -18 198 1 4 1315 392 338 6 36 chr9 95741355 95741521 -28334651 + MIRb SINE MIR 33 193 -75 4 1315 895 113 27 54 chr9 95741746 95741895 -28334277 + B1_Mur4 SINE Alu 1 145 -5 4 1315 1210 55 0 0 chr9 95741916 95742062 -28334110 + B1_Mus1 SINE Alu 3 148 0 4 1315 215 156 22 22 chr9 95742074 95742120 -28334052 + C-rich Low_complexity Low_complexity 3 48 0 4 1315 373 203 353 19 chr9 95742120 95742276 -28333896 - ID_B1 SINE B4 -14 210 3 5 1315 456 19 0 0 chr9 95743252 95743305 -28332867 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 5 1315 424 232 29 43 chr9 95743305 95743418 -28332754 - B1F2 SINE Alu -11 109 2 5 1315 1114 194 10 0 chr9 95743441 95743647 -28332525 - B3 SINE B2 -6 210 3 5 1315 364 305 48 6 chr9 95744377 95744542 -28331630 + MIR3 SINE MIR 5 176 -32 5 1315 290 286 132 60 chr9 95746591 95746840 -28329332 + L1ME1 LINE L1 5586 5852 -332 5 1315 378 302 87 32 chr9 95747283 95747502 -28328670 + L1ME1 LINE L1 5847 6077 -102 5 1315 256 302 111 30 chr9 95747885 95747984 -28328188 + PB1 SINE Alu 5 111 -16 5 1315 1545 37 43 0 chr9 95747988 95748175 -28327997 + B2_Mm2 SINE B2 1 195 0 5 1315 399 233 120 8 chr9 95748280 95748301 -28327871 + B4 SINE B4 63 96 -196 5 1315 477 182 152 18 chr9 95748301 95748413 -28327759 + B1_Mur2 SINE Alu 1 127 -22 5 1315 281 219 0 14 chr9 95748424 95748498 -28327674 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 1315 347 237 132 0 chr9 95748613 95748727 -28327445 + B1F2 SINE Alu 18 146 -3 5 1315 1036 188 34 34 chr9 95748838 95749047 -28327125 + B3 SINE B2 8 216 0 5 1315 831 304 111 42 chr9 95749093 95749587 -28326585 - MT2A LTR ERVL -5 528 1 5 1315 221 0 35 0 chr9 95749901 95749930 -28326242 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1315 801 229 81 60 chr9 95749931 95750215 -28325957 + B4A SINE B4 1 290 -2 5 1315 285 232 82 21 chr9 95750722 95750819 -28325353 + PB1D9 SINE Alu 1 103 -17 5 1315 1478 112 78 85 chr9 95751034 95751169 -28325003 - RMER1A Other Other 0 1030 898 5 1315 351 0 0 0 chr9 95751169 95751208 -28324964 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1315 1478 112 78 85 chr9 95751208 95751354 -28324818 - RMER1A Other Other -133 897 751 5 1315 837 194 30 30 chr9 95751358 95751555 -28324617 - L1MA4A LINE L1 -362 5941 5745 5 1315 1140 45 0 0 chr9 95751861 95751995 -28324177 + B1_Mus1 SINE Alu 1 134 -14 5 1315 192 40 0 0 chr9 95751998 95752023 -28324149 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1315 540 111 0 0 chr9 95752811 95752892 -28323280 + (TATG)n Simple_repeat Simple_repeat 2 82 0 5 1315 236 214 0 0 chr9 95753737 95753779 -28322393 + ID4 SINE ID 40 81 -2 5 1315 464 248 54 68 chr9 95753968 95754115 -28322057 + B1F1 SINE Alu 3 147 -2 5 1315 316 240 42 0 chr9 95754235 95754331 -28321841 - PB1D10 SINE Alu -13 104 5 5 1315 231 297 55 0 chr9 95754707 95754798 -28321374 + PB1D10 SINE Alu 9 104 -13 5 1315 702 259 15 61 chr9 95755755 95755784 -28320388 + ID SINE ID 30 52 -172 5 1315 1591 144 40 206 chr9 95755784 95756231 -28319941 - ORR1D1 LTR MaLR -1 373 1 5 1315 702 259 15 61 chr9 95756231 95756398 -28319774 + ID_B1 SINE B4 53 217 -7 5 1315 622 264 0 7 chr9 95757183 95757328 -28318844 - ID_B1 SINE B4 -1 223 80 5 1315 584 223 12 24 chr9 95757516 95757682 -28318490 - MTD LTR MaLR 0 419 224 5 1315 322 175 161 15 chr9 95758692 95758787 -28317385 + PB1D9 SINE Alu 21 148 -1 5 1315 313 264 79 30 chr9 95759458 95759622 -28316550 + L1M4 LINE L1 5265 5436 -748 5 1315 280 200 131 65 chr9 95759641 95759748 -28316424 + B1F1 SINE Alu 36 149 0 5 1315 703 279 90 55 chr9 95759748 95760147 -28316025 + L1MB3 LINE L1 5435 5847 -336 5 1315 653 146 44 0 chr9 95760186 95760323 -28315849 + URR1B DNA MER1_type 83 225 0 5 1315 557 280 95 28 chr9 95760329 95760342 -28315830 + L1MB3 LINE L1 5878 5888 -295 5 1315 1352 92 22 0 chr9 95760342 95760527 -28315645 + B2_Mm2 SINE B2 1 189 -6 5 1315 557 280 95 28 chr9 95760527 95760796 -28315376 + L1MB3 LINE L1 5889 6179 -4 5 1315 511 265 84 5 chr9 95761071 95761273 -28314899 - MER33 DNA MER1_type -117 207 2 5 1315 352 263 111 0 chr9 95761470 95761569 -28314603 - PB1D10 SINE Alu -2 115 6 5 1315 437 243 54 0 chr9 95761637 95761748 -28314424 - RSINE1 SINE B4 -47 118 2 5 1315 180 0 0 0 chr9 95762174 95762194 -28313978 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1315 945 56 0 0 chr9 95762736 95762862 -28313310 + B1_Mm SINE Alu 1 126 -21 5 1315 726 185 0 43 chr9 95762873 95763014 -28313158 + B4A SINE B4 158 292 0 5 1315 228 204 20 0 chr9 95763015 95763064 -28313108 + (CATATA)n Simple_repeat Simple_repeat 6 55 0 5 1315 625 163 104 0 chr9 95763483 95763618 -28312554 - B1F2 SINE Alu 0 149 1 5 1315 740 189 14 7 chr9 95763727 95763871 -28312301 + B1_Mus2 SINE Alu 3 147 0 5 1315 653 51 10 0 chr9 95763874 95763972 -28312200 + B2_Mm1t SINE B2 95 193 0 5 1315 1397 97 16 0 chr9 95764216 95764402 -28311770 + B2_Mm2 SINE B2 1 189 -6 5 1315 924 182 0 0 chr9 95764619 95764767 -28311405 + B1_Mur2 SINE Alu 1 148 -1 5 1315 449 273 71 14 chr9 95764892 95764911 -28311261 + B1F SINE Alu 1 149 0 5 1315 566 229 0 33 chr9 95764911 95765033 -28311139 + ID_B1 SINE B4 107 224 0 5 1315 207 380 9 9 chr9 95765059 95765173 -28310999 - MIRb SINE MIR -2 266 153 5 1315 471 315 88 7 chr9 95767591 95767738 -28308434 - RSINE1 SINE B4 -2 163 5 5 1315 21 57 0 0 chr9 95768105 95768140 -28308032 + AT_rich Low_complexity Low_complexity 1 35 0 5 1315 4404 120 53 20 chr9 95768165 95768895 -28307277 + RMER6A LTR ERVK 1 754 -2 5 1315 580 279 20 7 chr9 95768895 95769043 -28307129 - RSINE1 SINE B4 -13 152 3 5 1315 22 0 0 0 chr9 95769405 95769427 -28306745 + AT_rich Low_complexity Low_complexity 1 22 0 5 1315 216 314 0 0 chr9 95770803 95770854 -28305318 + ID4_ SINE ID 1 51 -32 5 1315 7273 116 21 20 chr9 95772451 95773827 -28302345 - Lx LINE L1 -7 6647 5261 5 1315 254 83 0 0 chr9 95773827 95773863 -28302309 - U2 snRNA snRNA -152 36 1 5 1315 7273 116 21 20 chr9 95773863 95773886 -28302286 - Lx LINE L1 -7 5260 5236 5 1315 189 0 0 0 chr9 95773886 95773907 -28302265 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1315 5206 157 2 44 chr9 95773907 95774136 -28302036 - Lx LINE L1 -648 5235 5006 5 1315 689 168 27 47 chr9 95774155 95774305 -28301867 + B1_Mur1 SINE Alu 2 148 -1 5 1315 239 295 0 87 chr9 95775361 95775465 -28300707 + PB1 SINE Alu 1 95 -32 5 1315 21 57 0 0 chr9 95775505 95775540 -28300632 + AT_rich Low_complexity Low_complexity 1 35 0 5 1315 219 36 0 0 chr9 95776194 95776222 -28299950 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1315 2355 73 45 0 chr9 95776304 95776617 -28299555 - ORR1A2 LTR MaLR 0 327 1 5 1315 1348 85 21 11 chr9 95776666 95776857 -28299315 + B2_Mm1a SINE B2 1 193 0 5 1315 736 263 107 68 chr9 95776879 95777160 -28299012 - B4 SINE B4 0 292 1 5 1315 674 93 0 0 chr9 95777471 95777568 -28298604 - BC1_Mm scRNA scRNA -55 97 1 5 1315 351 150 0 0 chr9 95777954 95778014 -28298158 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1315 382 277 48 29 chr9 95778014 95778118 -28298054 - PB1D7 SINE Alu 0 120 15 5 1315 202 312 49 12 chr9 95778128 95778209 -28297963 + L2a LINE L2 3342 3425 -1 5 1315 1686 116 92 15 chr9 95778319 95778590 -28297582 - Lx4A LINE L1 -472 6586 6295 5 1315 916 176 30 24 chr9 95779217 95779386 -28296786 + B2_Mm2 SINE B2 2 171 -24 5 1315 4530 55 5 15 chr9 95779428 95780023 -28296149 - L1Md_F2 LINE L1 0 6582 5994 5 1315 23 0 0 0 chr9 95780064 95780087 -28296085 + AT_rich Low_complexity Low_complexity 1 23 0 5 1315 23 0 0 0 chr9 95780218 95780241 -28295931 + AT_rich Low_complexity Low_complexity 1 23 0 5 1315 665 261 58 19 chr9 95780241 95780448 -28295724 + B3 SINE B2 2 216 0 5 1315 392 252 50 64 chr9 95781189 95781329 -28294843 - MIR SINE MIR -122 140 3 5 1315 1638 27 0 0 chr9 95781954 95782142 -28294030 - B2_Mm1t SINE B2 -4 189 2 5 1315 719 211 16 0 chr9 95782178 95782306 -28293866 - MTC LTR MaLR -268 153 24 5 1315 556 245 42 7 chr9 95783741 95783885 -28292287 + B1F SINE Alu 1 149 0 5 1315 306 257 116 41 chr9 95783969 95784115 -28292057 - MLT1K LTR MaLR -14 581 425 5 1315 346 287 46 0 chr9 95784153 95784240 -28291932 - B1F SINE Alu -58 91 1 5 1315 584 250 38 25 chr9 95784407 95784567 -28291605 - RSINE1 SINE B4 -1 164 3 5 1315 2163 147 122 8 chr9 95784830 95785208 -28290964 + MTC LTR MaLR 1 421 0 5 1315 21 0 0 0 chr9 95785718 95785739 -28290433 + AT_rich Low_complexity Low_complexity 1 21 0 5 1315 584 167 0 10 chr9 95785956 95786053 -28290119 - MTD LTR MaLR -323 96 1 5 1315 3536 216 186 24 chr9 95786053 95787131 -28289041 - MTD-int LTR MaLR 0 1258 6 5 1315 1696 227 12 14 chr9 95787165 95787509 -28288663 - MTD LTR MaLR -76 343 1 5 1315 230 235 98 0 chr9 95787560 95787611 -28288561 - B4 SINE B4 -168 124 69 5 1315 252 0 0 0 chr9 95787645 95787673 -28288499 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1315 622 275 44 140 chr9 95787756 95788027 -28288145 - MER47B DNA MER2_type -73 345 101 5 1315 555 272 65 87 chr9 95788719 95788780 -28287392 - B4A SINE B4 -1 291 215 5 1315 727 175 0 40 chr9 95788780 95788792 -28287380 - B1_Mur2 SINE Alu -5 144 135 5 1315 369 0 0 0 chr9 95788792 95788833 -28287339 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 5 1315 555 272 65 87 chr9 95788833 95788944 -28287228 - B4A SINE B4 -78 214 111 5 1315 695 274 117 10 chr9 95788982 95789188 -28286984 - B4A SINE B4 -63 229 2 5 1315 243 331 90 42 chr9 95790428 95790595 -28285577 - MLT1H2 LTR MaLR -3 624 450 5 1315 260 344 0 0 chr9 95790821 95790885 -28285287 - MLT1H2 LTR MaLR -423 66 3 5 1315 308 236 14 44 chr9 95790904 95791012 -28285160 - ID4_ SINE ID -34 118 20 5 1315 693 200 64 0 chr9 95791364 95791504 -28284668 + B1F2 SINE Alu 1 149 0 5 1315 218 32 0 31 chr9 95791606 95791638 -28284534 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 5 1315 186 43 0 0 chr9 95791697 95791720 -28284452 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 1315 8176 33 21 0 chr9 95791726 95793200 -28282972 - L1Md_F2 LINE L1 -14 6568 5054 6 1315 25 31 0 0 chr9 95793973 95794005 -28282167 + AT_rich Low_complexity Low_complexity 1 32 0 6 1315 783 272 42 84 chr9 95794294 95794457 -28281715 - B4A SINE B4 -40 252 89 6 1315 1359 112 97 35 chr9 95794457 95794715 -28281457 - Lx LINE L1 -11 6643 6370 6 1315 783 272 42 84 chr9 95794715 95794812 -28281360 - B4A SINE B4 -204 88 3 6 1315 25 31 0 0 chr9 95794903 95794935 -28281237 + AT_rich Low_complexity Low_complexity 1 32 0 6 1315 419 353 9 0 chr9 95794966 95795082 -28281090 - ID_B1 SINE B4 -19 205 89 6 1315 225 204 18 18 chr9 95795092 95795147 -28281025 + CT-rich Low_complexity Low_complexity 1 55 0 6 1315 557 157 213 0 chr9 95795357 95795465 -28280707 + B1_Mus1 SINE Alu 1 131 -17 6 1315 315 0 0 0 chr9 95795882 95795917 -28280255 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 6 1315 792 178 0 0 chr9 95796007 95796136 -28280036 + B1_Mur1 SINE Alu 1 129 -20 6 1315 498 256 49 50 chr9 95796136 95796192 -28279980 + ID_B1 SINE B4 104 274 -18 6 1315 337 225 75 53 chr9 95796172 95796266 -28279906 + PB1D7 SINE Alu 24 119 -1 6 1315 674 328 70 15 chr9 95796410 95796682 -28279490 + B4A SINE B4 4 290 -2 6 1315 526 261 169 7 chr9 95796896 95797050 -28279122 - B3 SINE B2 -11 205 27 6 1315 1048 59 22 0 chr9 95797076 95797211 -28278961 - B1_Mus1 SINE Alu -10 138 1 6 1315 390 303 73 69 chr9 95797331 95797576 -28278596 + L1MC4 LINE L1 1616 1861 -4354 6 1315 1096 209 40 0 chr9 95798220 95798421 -28277751 - B3 SINE B2 0 216 8 6 1315 360 250 36 0 chr9 95798753 95798837 -28277335 - BC1_Mm scRNA scRNA -63 89 3 6 1315 23 0 0 0 chr9 95798975 95798998 -28277174 + AT_rich Low_complexity Low_complexity 1 23 0 6 1315 476 270 28 112 chr9 95799004 95799183 -28276989 - RSINE1 SINE B4 -1 164 1 6 1315 195 42 0 0 chr9 95799299 95799323 -28276849 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6 1315 267 352 115 0 chr9 95800108 95800230 -28275942 + B1F1 SINE Alu 1 136 -13 6 1315 700 202 0 23 chr9 95800271 95800403 -28275769 + B1_Mur1 SINE Alu 21 149 0 6 1315 261 0 0 0 chr9 95800443 95800472 -28275700 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 1315 368 284 122 35 chr9 95800715 95800912 -28275260 - L2 LINE L2 -1226 2193 1980 6 1315 183 100 0 0 chr9 95800929 95800959 -28275213 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 6 1315 912 87 87 0 chr9 95801023 95801150 -28275022 + B1_Mus1 SINE Alu 1 138 -10 6 1315 183 80 0 0 chr9 95801167 95801192 -28274980 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1315 219 304 0 0 chr9 95801290 95801336 -28274836 - ID4_ SINE ID -36 47 2 6 1315 241 338 6 134 chr9 95801407 95801491 -28274681 + ID SINE ID 1 67 -157 6 1315 1347 67 44 11 chr9 95801491 95801673 -28274499 + B2_Mm2 SINE B2 2 189 -6 6 1315 241 338 6 134 chr9 95801673 95801752 -28274420 + ID_B1 SINE B4 68 143 -81 6 1315 864 211 152 0 chr9 95801823 95801994 -28274178 + B3 SINE B2 13 209 -7 6 1315 724 246 0 14 chr9 95802153 95802164 -28274008 - B1_Mur1 SINE Alu -2 147 137 6 1315 207 0 0 0 chr9 95802164 95802187 -28273985 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 1315 724 246 0 14 chr9 95802187 95802323 -28273849 - B1_Mur1 SINE Alu -13 136 2 6 1315 466 160 13 0 chr9 95802456 95802531 -28273641 - RSINE1 SINE B4 -31 134 59 6 1315 2296 110 47 38 chr9 95802531 95802955 -28273217 + RMER6A LTR ERVK 329 756 0 6 1315 309 333 18 36 chr9 95803070 95803182 -28272990 - PB1D10 SINE Alu -7 110 1 6 1315 227 358 61 61 chr9 95803126 95803189 -28272983 - B4A SINE B4 -151 141 83 6 1315 183 42 0 0 chr9 95803189 95803213 -28272959 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1315 227 358 61 61 chr9 95803213 95803280 -28272892 - B4A SINE B4 -210 82 11 6 1315 479 232 34 40 chr9 95803283 95803431 -28272741 - B1F2 SINE Alu -2 147 1 6 1315 267 333 51 0 chr9 95803558 95803636 -28272536 + ID4_ SINE ID 1 82 -1 6 1315 209 108 27 0 chr9 95803690 95803727 -28272445 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 6 1315 739 160 63 8 chr9 95803744 95803870 -28272302 - B1_Mus1 SINE Alu -10 138 6 6 1315 343 267 27 0 chr9 95804307 95804382 -28271790 + B4A SINE B4 17 93 -199 6 1315 21 0 0 0 chr9 95804452 95804473 -28271699 + AT_rich Low_complexity Low_complexity 1 21 0 6 1315 433 156 21 0 chr9 95804476 95804572 -28271600 + GA-rich Low_complexity Low_complexity 2 99 0 6 1315 267 273 45 0 chr9 95804579 95804645 -28271527 + B4 SINE B4 220 288 -4 6 1315 378 42 0 0 chr9 95804819 95804867 -28271305 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1315 596 287 21 7 chr9 95804868 95805012 -28271160 - RSINE1 SINE B4 -17 148 3 6 1315 25 31 0 0 chr9 95806421 95806453 -28269719 + AT_rich Low_complexity Low_complexity 1 32 0 6 1315 24 67 0 0 chr9 95806979 95807024 -28269148 + AT_rich Low_complexity Low_complexity 1 45 0 6 1315 574 277 20 7 chr9 95807947 95808096 -28268076 + RSINE1 SINE B4 2 152 -13 6 1315 402 248 39 19 chr9 95808124 95808227 -28267945 + ID_B1 SINE B4 108 212 -12 6 1315 506 270 82 22 chr9 95808324 95808506 -28267666 - B3A SINE B2 -4 194 2 6 1315 552 244 31 8 chr9 95808949 95809077 -28267095 - B1_Mur1 SINE Alu -2 147 17 6 1315 296 325 0 0 chr9 95809094 95809171 -28267001 - ID4_ SINE ID -4 79 3 6 1315 1191 55 0 0 chr9 95809759 95809905 -28266267 + B1_Mus2 SINE Alu 2 147 0 6 1315 263 319 127 17 chr9 95810611 95810729 -28265443 - MIRc SINE MIR -68 200 70 6 1315 349 208 0 0 chr9 95811862 95811915 -28264257 + PB1D7 SINE Alu 7 59 -61 6 1315 285 261 0 84 chr9 95811915 95811933 -28264239 + ID_B1 SINE B4 88 152 -72 6 1315 206 314 0 126 chr9 95812000 95812135 -28264037 + L2 LINE L2 1423 1540 -1879 6 1315 690 214 7 40 chr9 95812472 95812623 -28263549 + B1_Mur3 SINE Alu 3 148 -1 6 1315 461 275 7 84 chr9 95812702 95812845 -28263327 - ID_B1 SINE B4 -7 217 86 6 1315 1530 32 43 0 chr9 95813152 95813339 -28262833 - B2_Mm2 SINE B2 0 195 1 6 1316 225 259 0 0 chr9 95814474 95814532 -28261640 + L1M4 LINE L1 5407 5464 -720 6 1316 224 207 121 0 chr9 95814891 95814949 -28261223 - B1_Mur1 SINE Alu -2 147 83 6 1316 435 271 93 0 chr9 95814899 95815017 -28261155 - ID_B1 SINE B4 -14 210 82 6 1316 315 0 0 0 chr9 95815304 95815339 -28260833 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1316 906 267 28 22 chr9 95815725 95816024 -28260148 + B4 SINE B4 6 291 -1 6 1316 183 85 64 0 chr9 95816120 95816167 -28260005 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 6 1316 631 287 46 23 chr9 95816256 95816431 -28259741 + MTE2a LTR MaLR 12 190 -189 6 1316 282 262 0 16 chr9 95816442 95816504 -28259668 - MTE2b LTR MaLR -318 61 1 6 1316 24 67 0 0 chr9 95816799 95816844 -28259328 + AT_rich Low_complexity Low_complexity 1 45 0 6 1316 805 206 0 0 chr9 95817311 95817452 -28258720 - B1_Mus2 SINE Alu -6 141 1 6 1316 24 0 0 0 chr9 95818377 95818401 -28257771 + AT_rich Low_complexity Low_complexity 1 24 0 6 1316 858 207 96 5 chr9 95818687 95818886 -28257286 - ID_B1 SINE B4 -7 217 1 6 1316 1222 274 75 14 chr9 95819273 95819646 -28256526 - MTD LTR MaLR -14 405 18 6 1316 338 269 47 28 chr9 95819654 95819761 -28256411 + PB1 SINE Alu 1 109 -18 6 1316 221 309 0 0 chr9 95819768 95819823 -28256349 + GA-rich Low_complexity Low_complexity 4 58 0 6 1316 23 0 0 0 chr9 95820157 95820180 -28255992 + AT_rich Low_complexity Low_complexity 1 23 0 6 1316 492 376 6 13 chr9 95820201 95820360 -28255812 + RSINE1 SINE B4 3 160 -5 6 1316 253 307 44 78 chr9 95820360 95820381 -28255791 + B2_Mm1t SINE B2 2 175 -18 6 1316 527 228 17 9 chr9 95820439 95820554 -28255618 - PB1D9 SINE Alu -4 116 1 6 1316 1167 191 0 19 chr9 95822413 95822626 -28253546 + B3 SINE B2 2 210 -6 6 1316 260 350 35 4 chr9 95822695 95822802 -28253370 + B1F SINE Alu 1 114 -6 6 1316 195 42 0 0 chr9 95823470 95823494 -28252678 + (CTG)n Simple_repeat Simple_repeat 2 25 0 6 1316 1205 96 0 38 chr9 95823500 95823685 -28252487 - B2_Mm2 SINE B2 -16 179 2 6 1316 400 239 35 35 chr9 95824762 95824875 -28251297 - Tigger5 DNA MER2_type -4 2402 2290 6 1316 314 204 202 11 chr9 95824887 95824981 -28251191 + MER44D DNA MER2_type 4 115 -590 6 1316 22 0 0 0 chr9 95824995 95825017 -28251155 + AT_rich Low_complexity Low_complexity 1 22 0 6 1316 610 263 30 60 chr9 95825028 95825194 -28250978 + MER44D DNA MER2_type 543 703 -2 6 1316 275 329 41 0 chr9 95825194 95825267 -28250905 - Tigger5 DNA MER2_type -2176 230 155 6 1316 1170 124 0 11 chr9 95825498 95825677 -28250495 + B2_Mm2 SINE B2 1 177 -18 6 1316 366 244 145 51 chr9 95825706 95825844 -28250328 + B3 SINE B2 66 216 0 6 1316 372 229 18 0 chr9 95826004 95826082 -28250090 - B1_Mur2 SINE Alu -3 117 33 6 1316 374 306 18 26 chr9 95826245 95826359 -28249813 - PB1D10 SINE Alu 0 117 5 6 1316 6454 77 5 1 chr9 95826532 95827382 -28248790 - L1_Mus3 LINE L1 -2 6636 5784 6 1316 465 218 36 9 chr9 95827426 95827537 -28248635 - PB1D9 SINE Alu -6 114 1 6 1316 818 254 23 0 chr9 95828089 95828262 -28247910 - ID_B1 SINE B4 -46 178 2 6 1316 3932 92 41 0 chr9 95828414 95828969 -28247203 - RLTR13D5 LTR ERVK 0 1023 446 6 1316 566 222 125 0 chr9 95828966 95829110 -28247062 - B3A SINE B2 -36 162 1 6 1316 467 262 169 35 chr9 95829245 95829722 -28246450 + L1M4 LINE L1 5012 5556 -606 6 1316 564 274 124 15 chr9 95829868 95830127 -28246045 + B4A SINE B4 1 287 -5 7 1316 318 167 25 37 chr9 95830250 95830331 -28245841 + BC1_Mm scRNA scRNA 35 114 -38 7 1316 368 204 154 10 chr9 95830380 95830484 -28245688 + Lx9 LINE L1 7387 7505 -139 7 1316 945 221 53 10 chr9 95830643 95830849 -28245323 - B3 SINE B2 0 216 2 7 1316 1527 48 0 5 chr9 95831035 95831222 -28244950 - B2_Mm1a SINE B2 -7 186 1 7 1316 27 62 0 0 chr9 95831229 95831277 -28244895 + AT_rich Low_complexity Low_complexity 1 48 0 7 1316 288 343 28 47 chr9 95832111 95832218 -28243954 - B1F1 SINE Alu -10 139 35 7 1316 578 246 27 40 chr9 95832408 95832556 -28243616 - B1F1 SINE Alu -2 147 2 7 1316 2888 49 0 0 chr9 95832981 95833327 -28242845 + ORR1A0 LTR MaLR 1 346 0 7 1316 738 255 87 20 chr9 95833395 95833591 -28242581 - B3 SINE B2 -6 210 2 7 1316 4406 90 7 2 chr9 95833635 95834249 -28241923 - L1_Mm LINE L1 -190 5693 5077 7 1316 271 276 140 20 chr9 95834394 95834494 -28241678 - PB1D10 SINE Alu -5 112 1 7 1316 709 229 88 33 chr9 95834574 95834600 -28241572 - B3A SINE B2 -7 191 166 7 1316 349 37 18 36 chr9 95834600 95834656 -28241516 + (TATG)n Simple_repeat Simple_repeat 4 58 0 7 1316 743 233 26 26 chr9 95834656 95834810 -28241362 - B3 SINE B2 -62 154 1 7 1316 617 265 6 85 chr9 95835033 95835210 -28240962 + U1 snRNA snRNA 3 165 0 7 1316 22 0 0 0 chr9 95835505 95835527 -28240645 + AT_rich Low_complexity Low_complexity 1 22 0 7 1316 429 276 146 12 chr9 95835614 95835779 -28240393 + ID_B1 SINE B4 1 187 -37 7 1316 651 277 34 87 chr9 95836148 95836354 -28239818 + B3A SINE B2 1 195 -3 7 1316 750 196 140 0 chr9 95837204 95837383 -28238789 - B3 SINE B2 -9 207 4 7 1316 48 67 0 0 chr9 95837557 95837647 -28238525 + AT_rich Low_complexity Low_complexity 1 90 0 7 1316 248 329 12 0 chr9 95838247 95838329 -28237843 - ID2 SINE ID 0 83 1 7 1316 35 41 0 0 chr9 95838424 95838473 -28237699 + AT_rich Low_complexity Low_complexity 1 49 0 7 1316 221 0 35 0 chr9 95840106 95840135 -28236037 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 7 1316 1189 28 0 14 chr9 95840135 95840280 -28235892 - B1_Mus2 SINE Alu 0 147 5 7 1316 259 263 50 50 chr9 95840306 95840386 -28235786 - RSINE1 SINE B4 0 165 86 7 1316 263 319 194 0 chr9 95840409 95840553 -28235619 - B4A SINE B4 -120 172 1 7 1316 249 164 18 0 chr9 95840901 95840956 -28235216 - Lx8 LINE L1 -3 7470 7415 7 1316 550 250 92 82 chr9 95841458 95841654 -28234518 - B3A SINE B2 0 198 1 7 1316 225 208 208 0 chr9 95841762 95841834 -28234338 - L1MB4 LINE L1 -7 6173 6087 7 1316 195 114 0 0 chr9 95842355 95842390 -28233782 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 7 1316 281 270 117 6 chr9 95843563 95843742 -28232430 + L1MC4a LINE L1 6998 7196 -686 7 1316 265 295 79 11 chr9 95843752 95843841 -28232331 + B4A SINE B4 74 168 -124 7 1316 430 263 10 10 chr9 95843768 95843868 -28232304 + PB1D10 SINE Alu 9 108 -9 7 1316 301 290 73 18 chr9 95843881 95843940 -28232232 + L1MC4a LINE L1 7209 7271 -611 7 1316 3622 98 18 136 chr9 95843940 95844458 -28231714 - MT2B LTR ERVL 0 601 117 7 1316 1288 76 49 0 chr9 95844458 95844642 -28231530 + B2_Mm2 SINE B2 2 194 -1 7 1316 3622 98 18 136 chr9 95844642 95844805 -28231367 - MT2B LTR ERVL -485 116 1 7 1316 301 290 73 18 chr9 95844805 95844854 -28231318 + L1MC4a LINE L1 7272 7323 -559 7 1316 236 164 0 127 chr9 95844904 95844967 -28231205 - PB1D10 SINE Alu 0 117 63 7 1316 2067 111 38 3 chr9 95844979 95845295 -28230877 - ORR1A2 LTR MaLR 0 327 1 7 1316 246 337 48 0 chr9 95846090 95846173 -28229999 + MIRc SINE MIR 45 131 -137 7 1316 1281 89 44 0 chr9 95846691 95846871 -28229301 - B2_Mm2 SINE B2 -7 188 1 7 1316 3288 33 2 5 chr9 95847082 95847480 -28228692 + L1Md_F2 LINE L1 6183 6579 -3 7 1316 571 254 24 0 chr9 95847784 95847910 -28228262 + B1F2 SINE Alu 2 130 -19 7 1316 1742 269 101 19 chr9 95847975 95848671 -28227501 - L1MB7 LINE L1 -106 6078 5326 7 1316 351 336 8 25 chr9 95848674 95848793 -28227379 - PB1 SINE Alu -4 123 7 7 1316 180 0 0 0 chr9 95848879 95848899 -28227273 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1316 1126 56 7 0 chr9 95848902 95849044 -28227128 - B1_Mus1 SINE Alu -4 144 2 7 1316 866 246 46 5 chr9 95849129 95849325 -28226847 - B3 SINE B2 -12 204 1 7 1316 231 338 0 111 chr9 95849361 95849451 -28226721 - ID4_ SINE ID -1 82 3 7 1316 1004 273 113 51 chr9 95849451 95849716 -28226456 - L1MB7 LINE L1 -980 5166 4917 7 1316 585 200 97 30 chr9 95849716 95849850 -28226322 - B1F2 SINE Alu -5 144 2 7 1316 1004 273 113 51 chr9 95849850 95850272 -28225900 - L1MB7 LINE L1 -1230 4916 4436 7 1316 280 299 0 0 chr9 95851539 95851606 -28224566 - ID4_ SINE ID -15 68 2 7 1316 321 172 32 0 chr9 95853400 95853493 -28222679 + (TA)n Simple_repeat Simple_repeat 2 97 0 7 1316 481 258 93 0 chr9 95853660 95853811 -28222361 - ID_B1 SINE B4 -10 214 50 7 1316 343 276 0 22 chr9 95853798 95853887 -28222285 - ID_B1 SINE B4 -10 214 128 7 1316 1400 166 83 0 chr9 95854005 95854306 -28221866 + Lx2B LINE L1 5923 6248 -752 7 1316 1416 193 172 6 chr9 95854619 95854974 -28221198 - MTD LTR MaLR -2 417 4 7 1316 311 217 0 0 chr9 95856821 95856881 -28219291 + B1_Mus2 SINE Alu 1 60 -87 7 1316 599 232 39 0 chr9 95856997 95857152 -28219020 + B4A SINE B4 63 223 -69 7 1316 22 0 0 0 chr9 95857514 95857536 -28218636 + AT_rich Low_complexity Low_complexity 1 22 0 7 1316 1019 222 10 10 chr9 95857928 95858133 -28218039 - B3 SINE B2 -10 206 2 7 1316 459 267 26 8 chr9 95858161 95858278 -28217894 + PB1D7 SINE Alu 1 119 -1 7 1316 380 250 87 39 chr9 95858286 95858390 -28217782 + B1_Mus1 SINE Alu 40 148 0 7 1316 380 306 16 16 chr9 95858725 95858848 -28217324 - RSINE1 SINE B4 0 165 43 7 1316 2791 108 65 0 chr9 95859168 95859583 -28216589 - MT2B2 LTR ERVL -142 442 1 7 1316 378 42 0 0 chr9 95859794 95859842 -28216330 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1316 464 267 140 45 chr9 95859856 95860056 -28216116 - RLTR11A2 LTR ERVK -308 219 1 7 1316 242 220 20 0 chr9 95860385 95860435 -28215737 + ID SINE ID 9 59 -165 7 1316 688 234 38 54 chr9 95860681 95860866 -28215306 + B3A SINE B2 1 182 -16 7 1316 21 71 0 0 chr9 95860911 95860953 -28215219 + AT_rich Low_complexity Low_complexity 1 42 0 7 1316 229 232 53 18 chr9 95860989 95861046 -28215126 - PB1D10 SINE Alu 0 117 59 7 1316 567 276 31 0 chr9 95860997 95861124 -28215048 - ID_B1 SINE B4 -7 217 87 7 1316 358 175 0 0 chr9 95861562 95861619 -28214553 - LSU-rRNA_Hsa rRNA rRNA -3198 1837 1781 7 1316 2981 156 42 61 chr9 95861620 95862260 -28213912 - RMER6-int LTR ERVK -2543 634 7 7 1316 2727 153 201 28 chr9 95862859 95863437 -28212735 + RLTR33 LTR ERVK 1 678 0 7 1316 189 0 0 0 chr9 95863522 95863543 -28212629 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1316 798 167 7 42 chr9 95863543 95863687 -28212485 - B1_Mus1 SINE Alu -9 139 1 7 1316 552 288 6 61 chr9 95864065 95864228 -28211944 - B3A SINE B2 -4 194 41 7 1316 216 97 0 0 chr9 95864268 95864299 -28211873 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1316 2074 126 28 31 chr9 95865095 95865422 -28210750 - ORR1A2 LTR MaLR -1 326 1 7 1316 1187 97 29 0 chr9 95865776 95865951 -28210221 - B2_Mm2 SINE B2 -14 181 2 7 1316 360 215 181 11 chr9 95866099 95866193 -28209979 + B1_Mur1 SINE Alu 5 114 -35 7 1316 231 200 29 44 chr9 95866136 95866204 -28209968 + RLTR25A LTR ERVK 529 595 -508 7 1316 751 166 13 46 chr9 95866893 95867034 -28209138 + B1_Mur3 SINE Alu 1 139 -10 7 1316 297 51 0 0 chr9 95867034 95867073 -28209099 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1316 200 374 99 11 chr9 95867116 95867297 -28208875 + L2 LINE L2 2281 2477 -942 7 1316 21 71 0 0 chr9 95867608 95867650 -28208522 + AT_rich Low_complexity Low_complexity 1 42 0 7 1316 30 0 0 0 chr9 95867832 95867862 -28208310 + AT_rich Low_complexity Low_complexity 1 30 0 7 1316 888 146 21 0 chr9 95867862 95868006 -28208166 + B1_Mur3 SINE Alu 3 149 0 7 1316 287 279 51 0 chr9 95868336 95868415 -28207757 + B3 SINE B2 128 210 -6 7 1316 841 269 74 5 chr9 95868449 95868651 -28207521 + B4A SINE B4 13 228 -64 7 1316 711 215 20 34 chr9 95868652 95868801 -28207371 + B1_Mur2 SINE Alu 3 149 0 7 1316 231 308 15 44 chr9 95868797 95868865 -28207307 + B4 SINE B4 216 281 -11 7 1316 579 273 150 31 chr9 95868915 95869108 -28207064 + ID_B1 SINE B4 7 222 -2 7 1316 509 312 42 7 chr9 95869191 95869333 -28206839 + RSINE1 SINE B4 10 156 -9 7 1316 180 0 0 0 chr9 95869770 95869790 -28206382 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 7 1316 318 26 0 0 chr9 95870100 95870138 -28206034 + B1_Mus2 SINE Alu 61 98 -49 7 1316 348 245 123 0 chr9 95870245 95870351 -28205821 - B3 SINE B2 -17 199 81 7 1316 849 54 9 0 chr9 95870520 95870631 -28205541 - B1_Mus1 SINE Alu -4 144 33 7 1316 247 29 0 0 chr9 95870630 95870665 -28205507 + B1_Mus2 SINE Alu 113 147 0 7 1316 1078 255 113 109 chr9 95871331 95872134 -28204038 - L1M3 LINE L1 -992 5148 4364 7 1316 1279 157 24 10 chr9 95872134 95872340 -28203832 - B3 SINE B2 -6 210 2 7 1316 1078 255 113 109 chr9 95872340 95872704 -28203468 - L1M3 LINE L1 -1777 4363 3976 7 1316 336 154 43 98 chr9 95872725 95872852 -28203320 - RMER17A LTR ERVK -299 452 277 7 1316 452 271 57 7 chr9 95872852 95872993 -28203179 - RSINE1 SINE B4 -15 150 3 7 1316 234 140 43 130 chr9 95872993 95873022 -28203150 - RMER17A LTR ERVK -533 276 251 7 1316 426 244 8 34 chr9 95873008 95873127 -28203045 - B1_Mm SINE Alu -14 133 18 7 1316 253 286 98 21 chr9 95873127 95873270 -28202902 - L1M3 LINE L1 -2196 3944 3791 7 1316 180 111 0 0 chr9 95873389 95873416 -28202756 + (CATA)n Simple_repeat Simple_repeat 4 30 0 8 1316 461 250 26 18 chr9 95874400 95874514 -28201658 - PB1D10 SINE Alu -2 115 1 8 1316 249 218 0 0 chr9 95875341 95875419 -28200753 + T-rich Low_complexity Low_complexity 1 78 0 8 1316 400 216 265 15 chr9 95875653 95875789 -28200383 + B3 SINE B2 47 216 0 8 1316 1260 91 37 16 chr9 95875921 95876090 -28200082 + B2_Mm2 SINE B2 1 175 -20 8 1316 198 0 0 0 chr9 95876090 95876112 -28200060 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 8 1316 1260 91 37 16 chr9 95876112 95876132 -28200040 + B2_Mm2 SINE B2 176 194 -1 8 1316 1214 215 0 0 chr9 95876241 95876455 -28199717 + B3 SINE B2 1 214 -2 8 1316 32 26 0 0 chr9 95876653 95876692 -28199480 + AT_rich Low_complexity Low_complexity 1 39 0 8 1316 203 152 22 0 chr9 95876780 95876826 -28199346 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1316 428 254 163 63 chr9 95876836 95877088 -28199084 - B4A SINE B4 -13 279 3 8 1316 212 312 25 12 chr9 95877187 95877268 -28198904 + PB1D10 SINE Alu 36 117 0 8 1316 24 0 0 0 chr9 95877532 95877556 -28198616 + AT_rich Low_complexity Low_complexity 1 24 0 8 1316 335 289 96 0 chr9 95878767 95878850 -28197322 + PB1 SINE Alu 26 116 -11 8 1316 314 311 56 107 chr9 95880153 95880491 -28195681 - ORR1E LTR MaLR -21 338 18 8 1316 384 304 26 0 chr9 95880552 95880667 -28195505 + PB1D7 SINE Alu 3 120 0 8 1316 204 240 20 0 chr9 95880667 95880717 -28195455 + GA-rich Low_complexity Low_complexity 1 51 0 8 1316 423 235 148 0 chr9 95881226 95881341 -28194831 + RSINE1 SINE B4 5 136 -29 8 1316 236 191 119 60 chr9 95881851 95881918 -28194254 + PB1D9 SINE Alu 35 105 -15 8 1316 253 187 0 26 chr9 95881935 95882012 -28194160 + (TA)n Simple_repeat Simple_repeat 1 75 0 8 1316 688 222 133 31 chr9 95882403 95882598 -28193574 - B3 SINE B2 -1 215 1 8 1316 655 190 107 0 chr9 95882748 95882869 -28193303 - B1_Mus1 SINE Alu -6 142 9 8 1316 538 266 131 38 chr9 95882942 95883255 -28192917 - RLTR15 LTR ERVK -17 342 1 8 1316 1185 82 99 0 chr9 95883535 95883706 -28192466 - B2_Mm1t SINE B2 -5 188 1 8 1316 375 145 14 8 chr9 95884252 95884357 -28191815 - B2_Mm2 SINE B2 -4 191 48 8 1316 1276 70 35 0 chr9 95884390 95884562 -28191610 - B2_Mm1t SINE B2 -14 179 2 8 1316 520 255 56 7 chr9 95884756 95884898 -28191274 + RSINE1 SINE B4 2 150 -15 8 1316 1446 65 16 0 chr9 95884949 95885134 -28191038 + B2_Mm2 SINE B2 1 188 -7 8 1316 369 260 48 9 chr9 95885173 95885278 -28190894 + PB1D10 SINE Alu 1 109 -8 8 1316 218 295 167 10 chr9 95885368 95885464 -28190708 + PB1D10 SINE Alu 2 112 -5 8 1316 553 258 267 41 chr9 95885768 95885988 -28190184 - B4 SINE B4 -22 270 1 8 1316 606 269 103 44 chr9 95885988 95886397 -28189775 - L1_Rod LINE L1 -406 5441 5009 8 1316 322 282 71 39 chr9 95886400 95886555 -28189617 - L1MD LINE L1 -3038 3108 2949 8 1316 384 240 59 39 chr9 95886574 95886761 -28189411 - L1MEf LINE L1 -3180 2963 2767 8 1316 385 210 126 29 chr9 95886768 95886871 -28189301 - ID_B1 SINE B4 0 224 112 8 1316 273 309 163 0 chr9 95886771 95886894 -28189278 - B1F2 SINE Alu 0 149 7 8 1316 492 336 95 36 chr9 95886894 95887086 -28189086 - L1MEf LINE L1 -3379 2764 2542 8 1316 779 152 348 166 chr9 95887086 95887537 -28188635 - MT2A LTR ERVL 0 533 1 8 1316 492 319 78 34 chr9 95887537 95887908 -28188264 - L1MEf LINE L1 -3602 2541 2167 8 1316 426 151 0 0 chr9 95887913 95887986 -28188186 + CT-rich Low_complexity Low_complexity 2 74 0 8 1316 936 206 51 5 chr9 95888290 95888485 -28187687 + B3 SINE B2 1 204 -12 8 1316 626 274 25 13 chr9 95888986 95889145 -28187027 - RSINE1 SINE B4 -2 163 3 8 1316 485 281 52 17 chr9 95889540 95889656 -28186516 + PB1 SINE Alu 6 125 -2 8 1316 904 269 30 0 chr9 95890314 95890548 -28185624 - B4A SINE B4 -51 241 1 8 1316 21 36 0 0 chr9 95890691 95890719 -28185453 + AT_rich Low_complexity Low_complexity 1 28 0 8 1316 207 0 0 0 chr9 95890719 95890742 -28185430 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1316 428 316 32 0 chr9 95890751 95890846 -28185326 - RSINE1 SINE B4 -2 163 66 8 1316 509 269 10 0 chr9 95890922 95891026 -28185146 - PB1D7 SINE Alu -12 108 4 8 1316 663 13 0 0 chr9 95891049 95891125 -28185047 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1316 610 261 29 0 chr9 95891148 95891286 -28184886 - B1F SINE Alu -7 142 1 8 1316 298 301 0 40 chr9 95891229 95891305 -28184867 - B4A SINE B4 -150 142 70 8 1316 22 80 0 0 chr9 95891565 95891615 -28184557 + AT_rich Low_complexity Low_complexity 1 50 0 8 1316 219 114 0 0 chr9 95891714 95891749 -28184423 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8 1316 225 0 0 0 chr9 95892296 95892321 -28183851 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 8 1316 607 246 147 11 chr9 95892616 95892793 -28183379 + B3 SINE B2 2 202 -14 8 1316 749 146 88 55 chr9 95892800 95892981 -28183191 - B2_Mm2 SINE B2 -7 188 2 8 1316 629 241 80 25 chr9 95893314 95893476 -28182696 + B3A SINE B2 2 172 -26 8 1316 623 211 6 64 chr9 95893472 95893494 -28182678 + ID_B1 SINE B4 77 224 0 8 1316 1081 59 0 0 chr9 95893494 95893629 -28182543 + B1_Mus1 SINE Alu 14 148 0 8 1316 216 0 0 0 chr9 95893637 95893661 -28182511 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1316 498 264 26 73 chr9 95893664 95893683 -28182489 + ID_B1 SINE B4 80 223 -1 8 1316 696 220 30 0 chr9 95893683 95893815 -28182357 + B1_Mur1 SINE Alu 13 148 -1 8 1316 443 273 56 7 chr9 95894317 95894461 -28181711 - ID_B1 SINE B4 -2 222 72 8 1316 705 244 56 42 chr9 95894501 95894715 -28181457 + ID_B1 SINE B4 4 220 -4 8 1316 26 30 0 0 chr9 95894746 95894779 -28181393 + AT_rich Low_complexity Low_complexity 1 33 0 8 1316 207 88 0 0 chr9 95894790 95894824 -28181348 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1316 1132 69 7 0 chr9 95894824 95894969 -28181203 - B1_Mus2 SINE Alu 0 147 2 8 1316 250 268 59 49 chr9 95896000 95896102 -28180070 - RSINE1 SINE B4 0 165 63 8 1316 189 0 0 0 chr9 95896229 95896250 -28179922 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 8 1316 720 259 93 0 chr9 95896259 95896452 -28179720 - B3 SINE B2 -5 211 1 8 1316 237 242 146 32 chr9 95896903 95897061 -28179111 - L1MD LINE L1 -1099 5047 4872 8 1316 575 232 49 16 chr9 95897081 95897265 -28178907 + B3A SINE B2 4 193 -5 8 1316 446 291 94 151 chr9 95897380 95897643 -28178529 - L1MD LINE L1 -1293 4853 4577 8 1316 371 341 37 0 chr9 95897643 95897778 -28178394 + B1F1 SINE Alu 5 144 -5 8 1316 405 277 70 45 chr9 95897778 95898036 -28178136 - L1MD LINE L1 -1570 4576 4362 8 1316 217 314 136 56 chr9 95898036 95898049 -28178123 - ID_B1 SINE B4 -2 222 88 8 1316 421 333 0 9 chr9 95898049 95898161 -28178011 - PB1 SINE Alu -10 117 7 8 1316 257 0 0 29 chr9 95898208 95898242 -28177930 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 8 1316 243 0 0 0 chr9 95898280 95898307 -28177865 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1316 1208 35 14 0 chr9 95898314 95898458 -28177714 - B1_Mm SINE Alu 0 147 2 8 1316 704 192 167 17 chr9 95898793 95898973 -28177199 + B3 SINE B2 4 210 -6 8 1316 349 258 0 0 chr9 95898994 95899060 -28177112 + PB1D10 SINE Alu 1 66 -51 8 1316 779 164 186 21 chr9 95899509 95899702 -28176470 + URR1B DNA MER1_type 1 225 0 8 1316 427 272 7 101 chr9 95900066 95900205 -28175967 + ID_B1 SINE B4 96 221 -3 8 1316 214 356 0 33 chr9 95900218 95900279 -28175893 + ID4 SINE ID 5 63 -20 8 1316 26 98 0 0 chr9 95900311 95900393 -28175779 + AT_rich Low_complexity Low_complexity 1 82 0 8 1316 240 35 0 0 chr9 95900650 95900679 -28175493 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 1316 213 39 0 0 chr9 95900682 95900708 -28175464 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 8 1316 604 250 7 35 chr9 95900734 95900879 -28175293 - B1_Mur2 SINE Alu -6 143 3 8 1316 326 295 97 9 chr9 95900993 95901106 -28175066 + PB1 SINE Alu 1 123 -4 8 1316 361 244 22 0 chr9 95901196 95901286 -28174886 + Tigger7 DNA MER2_type 23 114 -2377 8 1316 592 94 3 26 chr9 95901285 95901412 -28174760 - B1_Mus2 SINE Alu 0 149 28 8 1316 260 295 150 8 chr9 95901373 95901506 -28174666 + Tigger7 DNA MER2_type 105 256 -2235 8 1316 313 194 224 141 chr9 95901574 95901661 -28174511 + Tigger7 DNA MER2_type 379 480 -2011 8 1316 1169 75 0 0 chr9 95901661 95901808 -28174364 + B1_Mus2 SINE Alu 1 147 0 8 1316 313 194 224 141 chr9 95901808 95901912 -28174260 + Tigger7 DNA MER2_type 481 586 -1905 8 1316 430 255 231 52 chr9 95901886 95902172 -28174000 + Tigger7 DNA MER2_type 2142 2478 -13 8 1316 240 299 92 35 chr9 95902260 95902402 -28173770 + MIR SINE MIR 73 222 -40 8 1316 444 325 77 37 chr9 95903026 95903429 -28172743 + L1MC4 LINE L1 6662 7080 -962 8 1316 345 247 14 0 chr9 95903445 95903518 -28172654 + ID4 SINE ID 6 79 -4 8 1316 1306 72 77 0 chr9 95903533 95903714 -28172458 + B2_Mm2 SINE B2 1 195 0 8 1316 449 301 83 0 chr9 95903777 95903910 -28172262 + B1F1 SINE Alu 3 146 -3 8 1316 604 273 159 78 chr9 95904463 95904721 -28171451 + B4 SINE B4 2 280 -12 8 1316 546 88 38 0 chr9 95904862 95904942 -28171230 + ORR1A2 LTR MaLR 232 314 -13 8 1316 468 202 26 0 chr9 95904943 95905057 -28171115 + ORR1A2-int LTR MaLR 1 117 -1846 8 1316 1184 167 78 16 chr9 95905045 95905289 -28170883 - ORR1A2 LTR MaLR -68 259 1 8 1316 430 314 96 32 chr9 95905367 95905492 -28170680 - ID_B1 SINE B4 -10 214 82 8 1316 950 220 91 0 chr9 95905694 95905880 -28170292 + ID_B1 SINE B4 1 203 -21 8 1316 686 54 248 43 chr9 95905960 95906077 -28170095 + B1_Mus2 SINE Alu 2 142 -5 8 1316 315 225 36 36 chr9 95906955 95907038 -28169134 + ID4_ SINE ID 1 83 0 8 1316 617 281 22 0 chr9 95907354 95907493 -28168679 + ID_B1 SINE B4 82 223 -1 9 1316 307 317 222 87 chr9 95907647 95908003 -28168169 - MLT1C LTR MaLR 0 467 64 9 1316 455 280 26 65 chr9 95908083 95908236 -28167936 - RSINE1 SINE B4 -17 148 2 9 1316 257 263 0 66 chr9 95908378 95908439 -28167733 + ID4 SINE ID 26 82 -1 9 1316 336 102 0 0 chr9 95908758 95908807 -28167365 + (TTG)n Simple_repeat Simple_repeat 1 49 0 9 1316 256 282 43 112 chr9 95908809 95908925 -28167247 - B1_Mm SINE Alu -14 133 26 9 1316 497 176 0 0 chr9 95908962 95909036 -28167136 - B3A SINE B2 -38 160 87 9 1316 402 337 16 82 chr9 95909046 95909240 -28166932 - HAL1 LINE L1 -1557 950 770 9 1316 1350 67 39 0 chr9 95909251 95909278 -28166894 - B2_Mm2 SINE B2 -7 188 162 9 1316 189 0 0 0 chr9 95909278 95909299 -28166873 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 1316 1350 67 39 0 chr9 95909299 95909451 -28166721 - B2_Mm2 SINE B2 -34 161 3 9 1316 814 322 81 35 chr9 95909666 95910062 -28166110 + LTR16A LTR ERVL 22 435 -16 9 1316 189 0 0 0 chr9 95910338 95910359 -28165813 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1316 186 43 0 0 chr9 95910390 95910413 -28165759 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1316 368 122 13 17 chr9 95910421 95910494 -28165678 - B2_Mm2 SINE B2 -94 122 47 9 1316 1255 91 11 6 chr9 95910526 95910703 -28165469 - B2_Mm1t SINE B2 -14 179 2 9 1316 383 286 41 0 chr9 95911189 95911287 -28164885 + PB1D10 SINE Alu 9 110 -7 9 1316 25 51 0 0 chr9 95912261 95912300 -28163872 + AT_rich Low_complexity Low_complexity 1 39 0 9 1316 335 268 52 26 chr9 95912453 95912568 -28163604 + RSINE1 SINE B4 48 165 0 9 1316 651 292 19 7 chr9 95912969 95913124 -28163048 + ID_B1 SINE B4 5 161 -63 9 1316 509 233 95 29 chr9 95913130 95913267 -28162905 + B1_Mus2 SINE Alu 2 147 0 9 1316 207 162 0 0 chr9 95913267 95913304 -28162868 + A-rich Low_complexity Low_complexity 1 37 0 9 1316 314 267 0 0 chr9 95913305 95913365 -28162807 + ID_B1 SINE B4 152 211 -13 9 1316 455 96 27 0 chr9 95913365 95913438 -28162734 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 9 1316 844 241 18 23 chr9 95913836 95914053 -28162119 + B3 SINE B2 1 216 0 9 1316 519 244 22 15 chr9 95914109 95914246 -28161926 + B1F1 SINE Alu 12 149 0 9 1316 569 258 103 32 chr9 95914250 95914502 -28161670 + B4A SINE B4 2 271 -21 9 1316 1341 88 0 20 chr9 95914834 95915032 -28161140 - B2_Mm2 SINE B2 -1 194 1 9 1316 222 220 152 0 chr9 95915051 95915110 -28161062 + ID4 SINE ID 9 76 -7 9 1316 285 51 0 0 chr9 95915110 95915149 -28161023 + (CAGAGA)n Simple_repeat Simple_repeat 3 41 0 9 1316 337 301 133 44 chr9 95915260 95915320 -28160852 + ID_B1 SINE B4 24 159 -133 9 1316 414 300 42 0 chr9 95915320 95915440 -28160732 + B1F SINE Alu 5 129 -20 9 1316 337 301 133 44 chr9 95915440 95915486 -28160686 + ID_B1 SINE B4 160 269 -23 9 1316 52 64 0 0 chr9 95915667 95915761 -28160411 + AT_rich Low_complexity Low_complexity 1 94 0 9 1316 185 0 40 0 chr9 95915819 95915844 -28160328 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 9 1316 954 119 15 0 chr9 95915852 95915986 -28160186 - B1_Mur4 SINE Alu -10 140 5 9 1316 229 216 54 89 chr9 95916768 95916880 -28159292 - YREP_Mm Unknown Unknown -1460 352 245 9 1316 312 330 39 0 chr9 95916817 95916920 -28159252 + PB1D10 SINE Alu 7 113 -4 9 1316 493 298 6 47 chr9 95917304 95917473 -28158699 + RSINE1 SINE B4 2 163 -2 9 1316 45 45 0 0 chr9 95917476 95917542 -28158630 + AT_rich Low_complexity Low_complexity 1 66 0 9 1316 1081 95 0 13 chr9 95917550 95917699 -28158473 + B1_Mus1 SINE Alu 2 148 0 9 1316 824 215 0 0 chr9 95917718 95917853 -28158319 + B1_Mur2 SINE Alu 13 147 -2 9 1316 311 286 108 21 chr9 95917857 95917950 -28158222 + RSINE1 SINE B4 4 104 -61 9 1316 207 100 0 0 chr9 95917954 95917984 -28158188 + (TAA)n Simple_repeat Simple_repeat 3 32 0 9 1316 311 260 60 52 chr9 95918258 95918392 -28157780 + B1F2 SINE Alu 7 141 -8 9 1316 1251 58 92 0 chr9 95918918 95919092 -28157080 - B2_Mm1t SINE B2 -2 191 2 9 1316 515 336 0 15 chr9 95919275 95919411 -28156761 + B1F SINE Alu 1 134 -15 9 1316 219 316 105 0 chr9 95919426 95919510 -28156662 + B4 SINE B4 1 96 -196 9 1316 672 197 135 0 chr9 95919510 95919688 -28156484 - MTC LTR MaLR -3 418 217 9 1316 493 235 0 10 chr9 95919704 95919803 -28156369 - RSINE1 SINE B4 -31 134 37 9 1316 235 323 15 0 chr9 95920015 95920080 -28156092 + ID_B1 SINE B4 159 224 0 9 1316 354 241 0 40 chr9 95920084 95920211 -28155961 + L1ME1 LINE L1 5474 5590 -588 9 1316 683 47 0 0 chr9 95920211 95920297 -28155875 - BC1_Mm scRNA scRNA -65 87 2 9 1316 238 347 10 78 chr9 95920321 95920424 -28155748 - PB1D10 SINE Alu -21 96 1 9 1316 572 233 25 0 chr9 95920435 95920555 -28155617 - B1F SINE Alu -4 145 23 9 1316 450 251 81 18 chr9 95920811 95921095 -28155077 + L1ME1 LINE L1 5689 5984 -200 9 1316 23 0 0 0 chr9 95921220 95921243 -28154929 + AT_rich Low_complexity Low_complexity 1 23 0 9 1316 989 107 0 14 chr9 95921255 95921397 -28154775 + B1_Mur3 SINE Alu 10 149 0 9 1316 383 281 136 31 chr9 95921403 95921594 -28154578 + L1M5 LINE L1 5607 5817 -356 9 1316 1296 101 11 0 chr9 95921707 95921896 -28154276 + B2_Mm1t SINE B2 2 192 -1 9 1316 1089 102 7 0 chr9 95922373 95922520 -28153652 - B1_Mus1 SINE Alu 0 148 1 9 1316 238 306 78 39 chr9 95923320 95923449 -28152723 + RSINE1 SINE B4 3 136 -29 9 1316 361 241 80 11 chr9 95923642 95923730 -28152442 - PB1D10 SINE Alu -3 114 21 9 1316 270 299 158 48 chr9 95923794 95923814 -28152358 - MT2B LTR ERVL -264 337 213 9 1316 594 290 7 0 chr9 95923814 95923952 -28152220 - ID_B1 SINE B4 -5 219 81 9 1316 788 161 7 20 chr9 95924768 95924920 -28151252 - B1_Mur4 SINE Alu 0 150 1 9 1316 260 255 195 68 chr9 95924925 95925018 -28151154 + B1F1 SINE Alu 16 124 -25 9 1316 4393 18 0 0 chr9 95925018 95925511 -28150661 - MT2_Mm LTR ERVL 0 493 1 9 1316 260 255 195 68 chr9 95925511 95925535 -28150637 + B1F1 SINE Alu 125 148 -1 9 1316 1352 180 248 15 chr9 95925671 95926010 -28150162 - MTD LTR MaLR -1 418 1 9 1316 345 250 0 0 chr9 95926125 95926205 -28149967 + ID_B1 SINE B4 90 169 -55 9 1316 284 254 88 26 chr9 95926205 95926238 -28149934 + PB1D7 SINE Alu 9 128 -21 9 1316 342 206 116 68 chr9 95926459 95926578 -28149594 - B1_Mur4 SINE Alu -1 149 31 9 1316 247 247 92 23 chr9 95926723 95926810 -28149362 - B1F1 SINE Alu -51 98 6 9 1316 398 286 0 11 chr9 95926933 95927025 -28149147 - ID_B1 SINE B4 -10 214 124 9 1316 382 265 16 49 chr9 95927764 95927887 -28148285 + B4 SINE B4 5 123 -169 9 1316 509 310 58 37 chr9 95928036 95928227 -28147945 + B4A SINE B4 98 292 0 9 1316 212 291 80 102 chr9 95928297 95928385 -28147787 + ID_B1 SINE B4 83 168 -56 9 1316 1447 199 45 32 chr9 95928461 95928772 -28147400 + ORR1C2 LTR MaLR 1 315 -69 9 1316 634 209 7 101 chr9 95928785 95928934 -28147238 + B1_Mur1 SINE Alu 2 136 -13 9 1316 233 281 229 0 chr9 95929224 95929320 -28146852 - L2 LINE L2 -1376 2043 1926 9 1316 682 235 69 12 chr9 95929321 95929507 -28146665 + B3A SINE B2 1 193 0 9 1316 271 253 79 13 chr9 95929537 95929613 -28146559 - PB1D10 SINE Alu -36 81 1 9 1316 259 275 29 0 chr9 95929558 95929627 -28146545 - B4A SINE B4 -150 142 72 9 1316 487 257 8 110 chr9 95929625 95929752 -28146420 + PB1 SINE Alu 7 120 -7 9 1316 700 153 92 0 chr9 95931407 95931538 -28144634 + B1_Mur3 SINE Alu 5 147 -2 9 1316 197 159 0 22 chr9 95931567 95931612 -28144560 + GA-rich Low_complexity Low_complexity 4 47 0 9 1316 465 287 9 0 chr9 95931709 95931817 -28144355 + B3A SINE B2 1 109 -89 9 1316 5708 53 8 2 chr9 95931873 95932659 -28143513 - L1VL2 LINE L1 -2555 1060 271 9 1316 653 303 121 9 chr9 95932779 95933002 -28143170 + B4A SINE B4 1 248 -44 9 1316 1170 181 19 14 chr9 95933415 95933623 -28142549 + B3 SINE B2 1 209 -7 9 1316 29 47 0 0 chr9 95933921 95933964 -28142208 + AT_rich Low_complexity Low_complexity 1 43 0 9 1316 183 42 0 0 chr9 95934192 95934216 -28141956 + (TTGG)n Simple_repeat Simple_repeat 1 24 0 9 1316 566 290 32 6 chr9 95934278 95934434 -28141738 + RSINE1 SINE B4 4 163 -2 9 1316 838 285 106 11 chr9 95934533 95934994 -28141178 - L1M4 LINE L1 -1270 4876 4372 9 1316 357 272 98 29 chr9 95935009 95935183 -28140989 - L1MD LINE L1 -2047 4099 3914 9 1316 218 324 79 26 chr9 95935226 95935302 -28140870 - ID2 SINE ID -1 82 3 9 1316 258 154 0 0 chr9 95935498 95935537 -28140635 - RSINE1 SINE B4 -121 44 6 9 1316 183 42 0 0 chr9 95935549 95935573 -28140599 + (TTG)n Simple_repeat Simple_repeat 1 24 0 9 1316 960 132 21 0 chr9 95935589 95935733 -28140439 - B1_Mus2 SINE Alu 0 147 1 9 1316 429 273 81 0 chr9 95935734 95935833 -28140339 - B4A SINE B4 -62 230 124 9 1316 222 235 39 0 chr9 95935841 95935892 -28140280 + ID4 SINE ID 23 75 -8 9 1316 251 301 111 16 chr9 95936241 95936378 -28139794 + MIRb SINE MIR 2 156 -112 9 1316 1287 86 26 21 chr9 95936385 95936576 -28139596 + B2_Mm2 SINE B2 1 192 -3 9 1316 1926 166 29 61 chr9 95936645 95937056 -28139116 - RMER10B LTR ERVL 0 398 1 9 1316 498 196 98 67 chr9 95937317 95937552 -28138620 - RMER17C-int LTR ERVK -395 2843 2627 9 1316 468 219 87 31 chr9 95937856 95937983 -28138189 - ID_B1 SINE B4 -7 217 84 1 1316 1134 59 141 6 chr9 95938007 95938177 -28137995 - B2_Mm2 SINE B2 -2 193 1 1 1316 216 0 0 0 chr9 95938349 95938373 -28137799 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1 1316 898 85 0 30 chr9 95938404 95938537 -28137635 - B2_Mm2 SINE B2 -66 129 1 1 1316 270 181 169 0 chr9 95938655 95938738 -28137434 - Charlie4 DNA MER1_type -1828 133 37 1 1316 473 191 0 0 chr9 95938779 95938868 -28137304 + B3 SINE B2 1 89 -127 1 1316 996 114 132 0 chr9 95939732 95939898 -28136274 - B2_Mm2 SINE B2 -6 189 2 1 1316 486 0 0 0 chr9 95940360 95940414 -28135758 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1316 737 207 0 49 chr9 95940417 95940559 -28135613 - RSINE1 SINE B4 -29 136 2 1 1316 435 325 48 57 chr9 95940579 95940621 -28135551 + B4A SINE B4 1 40 -252 1 1316 1260 93 44 0 chr9 95940621 95940804 -28135368 + B2_Mm2 SINE B2 1 191 -4 1 1316 435 325 48 57 chr9 95940804 95940970 -28135202 + B4A SINE B4 41 207 -85 1 1316 6178 74 7 18 chr9 95940973 95941858 -28134314 - RLTR13A3 LTR ERVK 0 978 1 1 1316 432 238 71 45 chr9 95941930 95942084 -28134088 + B3A SINE B2 2 159 -39 1 1316 486 49 0 0 chr9 95942094 95942155 -28134017 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1316 364 328 15 7 chr9 95942215 95942350 -28133822 + B1F SINE Alu 1 136 -13 1 1316 287 260 27 63 chr9 95942414 95942525 -28133647 - B1_Mur2 SINE Alu 0 149 43 1 1316 578 254 7 14 chr9 95942552 95942692 -28133480 - B1F2 SINE Alu -10 139 1 1 1316 3105 65 8 2 chr9 95943398 95943796 -28132376 - MTB LTR MaLR 0 400 1 1 1316 279 198 97 114 chr9 95943823 95943838 -28132334 + MT2B LTR ERVL 153 165 -436 1 1316 573 202 100 8 chr9 95943838 95943968 -28132204 + B1_Mus2 SINE Alu 1 142 -5 1 1316 204 40 0 0 chr9 95944000 95944025 -28132147 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1316 1541 121 4 45 chr9 95944047 95944316 -28131856 - Lx3A LINE L1 0 6981 6724 1 1316 632 283 12 6 chr9 95944330 95944490 -28131682 - RSINE1 SINE B4 -2 163 3 1 1317 326 271 65 9 chr9 95944799 95944907 -28131265 - PB1D10 SINE Alu -1 116 3 1 1317 212 293 38 62 chr9 95945009 95945089 -28131083 + B1F2 SINE Alu 6 83 -66 1 1317 285 245 55 73 chr9 95945131 95945241 -28130931 + B1_Mur3 SINE Alu 6 113 -7 1 1317 264 310 120 0 chr9 95945385 95945485 -28130687 - PB1D10 SINE Alu 0 117 6 1 1317 1035 163 328 17 chr9 95945554 95945847 -28130325 - ORR1C2 LTR MaLR 0 384 1 1 1317 1385 75 11 0 chr9 95946343 95946529 -28129643 - B2_Mm1t SINE B2 -5 188 1 1 1317 215 182 0 43 chr9 95946663 95946709 -28129463 + B3 SINE B2 5 48 -168 1 1317 1220 41 7 0 chr9 95946788 95946934 -28129238 + B1_Mm SINE Alu 1 147 0 1 1317 321 171 0 4 chr9 95946970 95947031 -28129141 + L1MB3 LINE L1 5604 5662 -512 1 1317 375 150 97 7 chr9 95947036 95947151 -28129021 + B1_Mur1 SINE Alu 2 120 0 1 1317 240 274 189 0 chr9 95947057 95947163 -28129009 + B4 SINE B4 116 241 -51 1 1317 207 0 0 0 chr9 95947534 95947557 -28128615 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1 1317 768 148 96 0 chr9 95947557 95947681 -28128491 - B1_Mus1 SINE Alu -10 138 3 1 1317 241 271 0 23 chr9 95947709 95947796 -28128376 + L1MB3 LINE L1 6056 6140 -43 1 1317 246 62 0 0 chr9 95947796 95947828 -28128344 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 1 1317 433 176 11 11 chr9 95947908 95948000 -28128172 + B1_Mur2 SINE Alu 42 133 -16 1 1317 184 120 40 0 chr9 95948001 95948051 -28128121 + T-rich Low_complexity Low_complexity 2 53 0 1 1317 1401 39 0 0 chr9 95948357 95948537 -28127635 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1317 571 241 7 14 chr9 95948539 95948682 -28127490 - B3A SINE B2 -54 144 3 1 1317 332 264 93 9 chr9 95949044 95949151 -28127021 - PB1D10 SINE Alu -1 116 1 1 1317 974 103 20 0 chr9 95949304 95949450 -28126722 + B1_Mur3 SINE Alu 1 149 0 1 1317 2440 259 94 109 chr9 95949520 95950663 -28125509 - ORR1E-int LTR MaLR -245 1125 1 1 1317 592 264 50 11 chr9 95950769 95950949 -28125223 - ORR1E LTR MaLR -172 187 1 1 1317 564 244 16 0 chr9 95951185 95951312 -28124860 + RSINE1 SINE B4 1 129 -36 1 1317 1286 27 0 0 chr9 95952232 95952379 -28123793 - B1_Mus1 SINE Alu 0 148 2 1 1317 249 159 0 0 chr9 95952392 95952436 -28123736 + T-rich Low_complexity Low_complexity 1 44 0 1 1317 313 193 360 0 chr9 95952620 95952734 -28123438 - B3A SINE B2 -41 157 3 1 1317 459 0 0 0 chr9 95952837 95952888 -28123284 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1317 22 0 0 0 chr9 95953324 95953346 -28122826 + AT_rich Low_complexity Low_complexity 1 22 0 1 1317 400 127 28 0 chr9 95953382 95953453 -28122719 + L1MA10 LINE L1 6262 6334 0 1 1317 278 343 68 10 chr9 95953486 95953589 -28122583 + B1F1 SINE Alu 1 109 -40 1 1317 352 212 121 0 chr9 95954230 95954329 -28121843 - PB1D10 SINE Alu 0 117 7 1 1317 262 241 12 60 chr9 95955947 95956031 -28120141 + PB1D10 SINE Alu 3 82 -35 1 1317 1148 82 0 0 chr9 95956463 95956610 -28119562 + B1_Mus2 SINE Alu 1 147 0 1 1317 180 0 0 0 chr9 95957165 95957185 -28118987 + (CCA)n Simple_repeat Simple_repeat 2 21 0 1 1317 223 222 32 0 chr9 95957390 95957453 -28118719 - ID_B1 SINE B4 -77 147 83 1 1317 216 111 0 0 chr9 95957496 95957532 -28118640 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1317 1091 101 7 0 chr9 95957543 95957691 -28118481 - B1_Mur4 SINE Alu -1 149 1 1 1317 219 204 37 0 chr9 95958302 95958356 -28117816 - B1F1 SINE Alu -89 60 5 1 1317 548 259 42 7 chr9 95958581 95958725 -28117447 + Lx9 LINE L1 5856 6004 -1640 1 1317 3553 188 83 58 chr9 95958743 95959626 -28116546 + Lx9 LINE L1 6595 7499 -145 1 1317 802 169 0 0 chr9 95959645 95959775 -28116397 - B1_Mus1 SINE Alu -13 135 6 1 1317 329 125 42 0 chr9 95959795 95959867 -28116305 + Lx9 LINE L1 7534 7608 -36 1 1317 274 70 211 0 chr9 95960092 95960149 -28116023 - ORR1A4 LTR MaLR -260 69 1 1 1317 8816 125 59 190 chr9 95960149 95960981 -28115191 - ORR1A4-int LTR MaLR 0 1963 1167 1 1317 1575 37 5 0 chr9 95960981 95961168 -28115004 - B2_Mm1a SINE B2 -4 189 2 1 1317 8816 125 59 190 chr9 95961168 95961295 -28114877 - ORR1A4-int LTR MaLR -797 1166 1038 1 1317 901 100 27 0 chr9 95961295 95961445 -28114727 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 1 1317 8816 125 59 190 chr9 95961445 95962391 -28113781 - ORR1A4-int LTR MaLR -926 1037 355 1 1317 282 29 0 0 chr9 95962391 95962426 -28113746 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1317 8816 125 59 190 chr9 95962426 95962777 -28113395 - ORR1A4-int LTR MaLR -1609 354 1 1 1317 3946 69 33 2 chr9 95962810 95963362 -28112810 - LTRIS_Mus LTR ERV1 0 587 19 1 1317 1167 108 157 0 chr9 95963364 95963568 -28112604 - ORR1A4 LTR MaLR -35 294 59 1 1317 261 0 0 0 chr9 95963720 95963749 -28112423 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1317 1137 72 0 0 chr9 95964622 95964760 -28111412 - B1_Mus1 SINE Alu -9 139 2 1 1317 387 0 0 0 chr9 95964964 95965007 -28111165 + (CAGAGA)n Simple_repeat Simple_repeat 2 44 0 1 1317 410 94 0 0 chr9 95965153 95965217 -28110955 - ORR1A4 LTR MaLR -265 64 1 1 1317 234 150 0 0 chr9 95965257 95965297 -28110875 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 1 1317 432 0 0 0 chr9 95965575 95965623 -28110549 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1317 713 225 7 7 chr9 95965633 95965772 -28110400 - B1_Mur1 SINE Alu -10 139 1 1 1317 2113 163 107 9 chr9 95965833 95966290 -28109882 + RLTR16 LTR ERVK 4 505 0 1 1317 771 168 14 28 chr9 95966381 95966522 -28109650 - B1_Mur4 SINE Alu -6 144 6 1 1317 5814 153 42 50 chr9 95967390 95968072 -28108100 + Lx6 LINE L1 4725 5409 -471 1 1317 4838 102 16 34 chr9 95968072 95968249 -28107923 + RLTR19B LTR ERVK 1 161 -554 1 1317 753 0 31 0 chr9 95968249 95968346 -28107826 + (TC)n Simple_repeat Simple_repeat 1 100 0 1 1317 1337 90 17 0 chr9 95968352 95968529 -28107643 - B2_Mm2 SINE B2 -14 181 2 1 1317 4838 102 16 34 chr9 95968529 95969072 -28107100 + RLTR19B LTR ERVK 162 715 0 1 1317 8307 153 42 50 chr9 95969072 95969446 -28106726 + Lx6 LINE L1 5410 5784 -1676 1 1317 850 172 7 0 chr9 95969446 95969591 -28106581 + B1_Mur4 SINE Alu 5 150 0 1 1317 8307 202 53 37 chr9 95969591 95971209 -28104963 + Lx6 LINE L1 5785 7443 -17 1 1317 282 217 186 35 chr9 95971689 95971775 -28104397 - PB1D9 SINE Alu -5 115 17 1 1317 530 251 90 17 chr9 95971865 95972043 -28104129 - ID_B1 SINE B4 0 224 34 1 1317 714 253 13 0 chr9 95972114 95972264 -28103908 - RSINE1 SINE B4 -8 157 6 1 1317 252 0 0 0 chr9 95972285 95972313 -28103859 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1317 8912 129 39 11 chr9 95972325 95973826 -28102346 + Lx4B LINE L1 5513 7058 0 1 1317 22 0 0 0 chr9 95973832 95973854 -28102318 + AT_rich Low_complexity Low_complexity 1 22 0 1 1317 290 258 118 0 chr9 95973881 95973974 -28102198 - PB1D7 SINE Alu -16 104 1 1 1317 22 35 0 0 chr9 95974057 95974086 -28102086 + AT_rich Low_complexity Low_complexity 1 29 0 1 1317 1177 57 6 0 chr9 95974091 95974250 -28101922 + B2_Mm1a SINE B2 1 160 -33 1 1317 222 37 0 0 chr9 95974250 95974277 -28101895 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1317 341 293 0 0 chr9 95974500 95974599 -28101573 - BC1_Mm scRNA scRNA -53 99 1 1 1317 469 251 332 24 chr9 95975275 95975483 -28100689 - B4A SINE B4 -20 272 1 1 1317 538 246 48 0 chr9 95975786 95975912 -28100260 + B1F SINE Alu 13 144 -5 1 1317 216 149 64 0 chr9 95975917 95975964 -28100208 + GA-rich Low_complexity Low_complexity 3 52 0 1 1317 612 256 23 0 chr9 95975980 95976113 -28100059 + RSINE1 SINE B4 2 137 -28 1 1317 589 135 0 26 chr9 95976357 95976471 -28099701 + CT-rich Low_complexity Low_complexity 2 112 0 1 1317 533 148 16 83 chr9 95976472 95976664 -28099508 - RMER17C LTR ERVK -135 275 97 1 1317 352 300 50 59 chr9 95976655 95976857 -28099315 + LTR40a LTR ERVL 50 249 -270 1 1317 537 226 43 0 chr9 95976860 95976975 -28099197 + Lx5 LINE L1 6255 6374 -676 1 1317 1395 299 74 23 chr9 95976966 95977493 -28098679 + Lx5 LINE L1 6479 7032 -18 1 1317 1117 102 59 18 chr9 95977819 95977988 -28098184 + B2_Mm2 SINE B2 1 176 -19 1 1317 854 157 11 11 chr9 95977989 95978169 -28098003 + GA-rich Low_complexity Low_complexity 1 180 0 1 1317 1025 145 0 6 chr9 95978182 95978362 -28097810 + GA-rich Low_complexity Low_complexity 1 179 0 1 1317 240 35 0 0 chr9 95978452 95978481 -28097691 + (TTC)n Simple_repeat Simple_repeat 3 31 0 1 1317 396 0 0 0 chr9 95978481 95978525 -28097647 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1317 577 60 366 10 chr9 95978525 95978626 -28097546 - B1_Mus2 SINE Alu -10 137 1 1 1317 21 0 0 0 chr9 95978776 95978797 -28097375 + AT_rich Low_complexity Low_complexity 1 21 0 1 1317 1319 76 37 26 chr9 95978924 95979113 -28097059 + B2_Mm1t SINE B2 3 193 0 1 1317 306 0 0 0 chr9 95979213 95979247 -28096925 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1317 359 304 11 96 chr9 95979602 95979780 -28096392 + RSINE1 SINE B4 3 165 0 1 1317 489 200 0 62 chr9 95979780 95979972 -28096200 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1317 311 254 7 0 chr9 95979983 95980121 -28096051 + (CA)n Simple_repeat Simple_repeat 2 140 0 1 1317 529 206 0 43 chr9 95980137 95980325 -28095847 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1317 252 122 0 0 chr9 95980346 95980387 -28095785 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1317 360 252 0 0 chr9 95980398 95980537 -28095635 + (CA)n Simple_repeat Simple_repeat 2 140 0 1 1317 583 101 10 144 chr9 95980553 95980761 -28095411 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1317 320 137 0 0 chr9 95980781 95980832 -28095340 + HAL1-3A_ME LINE L1 1975 2025 -833 1 1317 272 278 156 40 chr9 95981018 95981217 -28094955 + ID_B1 SINE B4 2 223 -1 1 1317 1305 38 0 0 chr9 95981518 95981677 -28094495 + (GGAA)n Simple_repeat Simple_repeat 4 162 0 1 1317 222 37 0 0 chr9 95981932 95981959 -28094213 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 1 1317 660 89 0 73 chr9 95981982 95982091 -28094081 + B1_Mur2 SINE Alu 33 133 -16 1 1317 18025 20 0 0 chr9 95982119 95984173 -28091999 + L1Md_T LINE L1 3533 5586 -297 1 1317 9157 6 0 0 chr9 95984173 95985199 -28090973 + L1Md_T LINE L1 5587 6582 0 1 1317 367 268 10 40 chr9 95985206 95985307 -28090865 + B1F1 SINE Alu 2 99 -50 1 1317 498 164 39 62 chr9 95985621 95985774 -28090398 - B1F2 SINE Alu 0 149 5 1 1317 352 359 63 5 chr9 95985906 95986130 -28090042 + L1MC4 LINE L1 6365 6590 -1292 1 1317 361 287 10 0 chr9 95986150 95986251 -28089921 + B3A SINE B2 3 104 -94 1 1317 241 304 150 14 chr9 95986380 95986520 -28089652 + RSINE1 SINE B4 2 160 -5 1 1317 503 214 79 2 chr9 95986584 95986715 -28089457 + B3A SINE B2 28 170 -28 1 1317 393 129 21 11 chr9 95986902 95986996 -28089176 + CT-rich Low_complexity Low_complexity 3 97 0 1 1317 1026 186 129 52 chr9 95987209 95987524 -28088648 + MTD LTR MaLR 83 405 -14 1 1317 256 318 51 43 chr9 95987526 95987664 -28088508 + L1MC4 LINE L1 7431 7569 -473 1 1317 1019 92 0 13 chr9 95987669 95987823 -28088349 + (GAAA)n Simple_repeat Simple_repeat 3 154 0 1 1317 311 236 140 98 chr9 95988203 95988293 -28087879 + L1MC4 LINE L1 7798 7908 -134 1 1317 608 240 102 24 chr9 95988293 95988498 -28087674 + ID_B1 SINE B4 4 224 0 1 1317 311 236 140 98 chr9 95988498 95988546 -28087626 + L1MC4 LINE L1 7909 7953 -89 1 1317 4952 128 19 90 chr9 95988546 95989517 -28086655 + RLTR13D6 LTR ERVK 1 902 0 1 1317 311 236 140 98 chr9 95989517 95989612 -28086560 + L1MC4 LINE L1 7954 8041 -1 1 1317 1074 130 20 25 chr9 95989666 95989863 -28086309 + MTB_Mm LTR MaLR 1 196 -211 1 1317 222 152 16 33 chr9 95989866 95989927 -28086245 + CT-rich Low_complexity Low_complexity 2 61 0 1 1317 475 211 60 60 chr9 95989930 95989981 -28086191 + RMER10B LTR ERVL 194 245 -153 1 1317 3371 41 5 0 chr9 95989981 95990375 -28085797 - MTA_Mm LTR MaLR 0 396 1 1 1317 475 211 60 60 chr9 95990375 95990474 -28085698 + RMER10B LTR ERVL 246 344 -54 1 1317 432 0 0 0 chr9 95990474 95990522 -28085650 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1317 360 0 0 0 chr9 95990522 95990561 -28085611 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1317 868 238 5 32 chr9 95990568 95990785 -28085387 + MTB_Mm LTR MaLR 203 413 -8 1 1317 360 256 0 25 chr9 95990823 95990903 -28085269 + RSINE1 SINE B4 88 165 0 1 1317 254 258 15 15 chr9 95990945 95991012 -28085160 - Ricksha_c DNA MuDR -1142 906 840 1 1317 391 279 62 41 chr9 95991012 95991024 -28085148 + B1F SINE Alu 1 79 -70 1 1317 557 217 24 48 chr9 95991024 95991150 -28085022 + ID_B1 SINE B4 94 216 -8 1 1317 203 146 0 24 chr9 95991462 95991504 -28084668 + CT-rich Low_complexity Low_complexity 1 41 0 1 1317 459 175 64 18 chr9 95991510 95991626 -28084546 - B1F2 SINE Alu -22 127 15 1 1317 609 250 78 21 chr9 95991634 95991826 -28084346 - L1M4 LINE L1 -3709 3297 3095 1 1317 493 263 29 21 chr9 95991834 95991974 -28084198 + B1F SINE Alu 9 149 0 1 1317 315 0 0 0 chr9 95992113 95992148 -28084024 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 1317 588 197 71 0 chr9 95992148 95992275 -28083897 - B1_Mur1 SINE Alu -13 136 1 1 1317 321 278 9 76 chr9 95992283 95992388 -28083784 - ID_B1 SINE B4 -6 218 121 1 1317 21 0 0 0 chr9 95992943 95992964 -28083208 + AT_rich Low_complexity Low_complexity 1 21 0 1 1317 282 308 7 27 chr9 95992995 95993045 -28083127 - L1M4 LINE L1 -5295 2039 1991 1 1317 4228 63 37 9 chr9 95993045 95993591 -28082581 - LTRIS2 LTR ERV1 0 564 4 1 1317 282 308 7 27 chr9 95993591 95993687 -28082485 - L1M4 LINE L1 -5344 1990 1896 1 1317 253 208 18 36 chr9 95993723 95993778 -28082394 - ID4 SINE ID -29 54 1 1 1317 511 206 119 0 chr9 95993811 95993937 -28082235 - RLTR30 LTR ERV1 0 379 239 1 1317 594 128 0 0 chr9 95993938 95994055 -28082117 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 1 1317 775 132 15 8 chr9 95994068 95994198 -28081974 - B1_Mur3 SINE Alu -8 141 11 1 1317 315 369 13 26 chr9 95994239 95994392 -28081780 - L1M4 LINE L1 -5012 1892 1742 1 1317 219 88 0 0 chr9 95994447 95994481 -28081691 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1317 575 202 8 40 chr9 95994498 95994622 -28081550 - B1_Mur1 SINE Alu -29 120 1 1 1317 306 216 350 2 chr9 95994648 95994852 -28081320 - L1M4 LINE L1 -5158 1746 1430 1 1317 308 211 93 21 chr9 95995635 95995732 -28080440 - PB1D10 SINE Alu 0 117 14 1 1317 324 283 0 80 chr9 95995970 95996070 -28080102 - ID_B1 SINE B4 -32 192 101 1 1317 271 288 90 64 chr9 95996241 95996397 -28079775 + RLTR24 LTR ERV1 3 162 -367 1 1317 325 228 201 115 chr9 95996506 95996645 -28079527 + RLTR24 LTR ERV1 379 529 0 1 1317 1217 134 143 0 chr9 95996659 95996890 -28079282 - RMER6D LTR ERVK -4 716 453 1 1317 1198 61 0 0 chr9 95997012 95997159 -28079013 + B1_Mus1 SINE Alu 1 147 -1 1 1317 666 252 15 0 chr9 95997386 95997517 -28078655 + ETnERV2-int LTR ERVK 7070 7202 -204 1 1317 331 282 50 22 chr9 95998082 95998263 -28077909 + RLTR45-int LTR ERVK 181 366 -6878 1 1317 2139 188 138 20 chr9 95998406 95998915 -28077257 + RMER16-int LTR ERVK 251 819 -4587 1 1317 561 138 128 0 chr9 95998920 95999029 -28077143 + RMER16-int LTR ERVK 938 1060 -5077 1 1317 1165 229 73 31 chr9 95999042 95999330 -28076842 + ETnERV2-int LTR ERVK 2454 2753 -4653 1 1317 2298 89 15 12 chr9 95999356 95999684 -28076488 + ETnERV2-int LTR ERVK 3567 3895 -3511 1 1317 615 106 11 0 chr9 95999882 95999976 -28076196 + BGLII_A LTR ERVK 26 120 -325 1 1317 2101 213 45 16 chr9 96000025 96000473 -28075699 + RLTR17 LTR ERVK 172 632 -60 1 1317 1705 164 94 29 chr9 96000534 96000885 -28075287 - ORR1D1 LTR MaLR 0 374 1 2 1317 669 217 7 34 chr9 96001028 96001176 -28074996 + B1_Mur1 SINE Alu 6 149 0 3 1317 2773 89 71 2 chr9 96001415 96001589 -28074583 - BGLII_Mus LTR ERVK 0 422 245 4 1317 912 44 0 0 chr9 96001589 96001702 -28074470 + (TCC)n Simple_repeat Simple_repeat 1 113 0 5 1317 2773 89 71 2 chr9 96001702 96001922 -28074250 - BGLII_Mus LTR ERVK -178 244 1 4 1317 501 283 58 0 chr9 96002028 96002166 -28074006 + RSINE1 SINE B4 3 148 -17 6 1317 279 0 0 0 chr9 96002181 96002212 -28073960 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 7 1317 1169 81 0 0 chr9 96002362 96002510 -28073662 + B1_Mus1 SINE Alu 1 148 0 8 1317 590 229 54 20 chr9 96002635 96002782 -28073390 - MER82 DNA MER2_type -467 186 35 9 1317 709 264 67 9 chr9 96003065 96003275 -28072897 + LTRIS4 LTR ERV1 286 507 0 1 1317 241 274 111 94 chr9 96003336 96003453 -28072719 - PB1D7 SINE Alu -1 119 1 1 1317 429 95 0 0 chr9 96003530 96003593 -28072579 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1317 579 261 179 44 chr9 96003599 96003851 -28072321 - B4 SINE B4 -6 286 1 1 1317 911 156 207 0 chr9 96003871 96004050 -28072122 - B3 SINE B2 0 216 1 1 1317 449 319 9 0 chr9 96004070 96004183 -28071989 - B1F2 SINE Alu -34 115 2 1 1317 313 211 52 13 chr9 96004216 96004293 -28071879 - PB1D10 SINE Alu -23 94 15 1 1317 486 314 106 16 chr9 96004402 96004590 -28071582 + ORR1E LTR MaLR 1 205 -154 1 1317 723 310 103 44 chr9 96004614 96005117 -28071055 - MT2A LTR ERVL 0 533 1 1 1317 217 229 115 0 chr9 96005244 96005305 -28070867 + B1_Mus2 SINE Alu 2 69 -78 1 1317 4518 10 2 0 chr9 96005311 96005803 -28070369 - MT2_Mm LTR ERVL 0 493 1 2 1317 319 0 0 0 chr9 96005803 96005841 -28070331 - MERVL-int LTR ERVL 0 5485 5448 2 1317 403 167 46 35 chr9 96005841 96005928 -28070244 - ORR1A3-int LTR MaLR -1323 640 553 2 1317 49005 14 0 0 chr9 96005928 96011287 -28064885 - MERVL-int LTR ERVL -125 5360 1 2 1317 4518 10 2 0 chr9 96011287 96011779 -28064393 - MT2_Mm LTR ERVL 0 493 1 2 1317 858 155 0 34 chr9 96011849 96011996 -28064176 + B1_Mur4 SINE Alu 2 143 -7 2 1317 507 342 19 0 chr9 96012242 96012400 -28063772 - RMER15-int LTR ERVL -3619 1380 1220 2 1317 22 0 0 0 chr9 96012402 96012424 -28063748 + AT_rich Low_complexity Low_complexity 1 22 0 2 1317 728 224 73 39 chr9 96012429 96012633 -28063539 - B3 SINE B2 -5 211 1 2 1317 300 192 110 0 chr9 96012651 96012724 -28063448 - RMER15-int LTR ERVL -4220 779 699 2 1317 399 266 21 0 chr9 96013597 96013691 -28062481 + PB1D10 SINE Alu 14 109 -8 2 1317 184 265 20 0 chr9 96014767 96014816 -28061356 - L2c LINE L2 -57 3330 3281 2 1317 402 286 0 125 chr9 96015608 96015683 -28060489 + ID_B1 SINE B4 82 145 -79 2 1317 1191 63 0 0 chr9 96015683 96015825 -28060347 + B1_Mus2 SINE Alu 2 143 -4 2 1317 288 0 0 0 chr9 96015825 96015857 -28060315 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 3 1317 402 286 0 125 chr9 96015857 96015924 -28060248 + ID_B1 SINE B4 146 206 -18 2 1317 1887 133 101 6 chr9 96015937 96016263 -28059909 - ORR1C1 LTR MaLR -8 370 14 3 1317 557 178 59 0 chr9 96016270 96016388 -28059784 - B1_Mur1 SINE Alu 0 149 25 3 1317 2423 271 51 66 chr9 96016492 96017080 -28059092 + Lx8 LINE L1 6338 6926 -547 3 1317 1122 68 7 0 chr9 96017080 96017226 -28058946 - B1_Mus2 SINE Alu 0 147 1 3 1317 2423 271 51 66 chr9 96017226 96017458 -28058714 + Lx8 LINE L1 6927 7146 -327 3 1317 1117 214 0 0 chr9 96017576 96017782 -28058390 + B3 SINE B2 1 206 -10 3 1317 180 77 0 0 chr9 96017844 96017870 -28058302 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1317 379 268 52 37 chr9 96017930 96018068 -28058104 + PB1D10 SINE Alu 2 140 -7 3 1317 537 256 143 78 chr9 96018249 96018356 -28057816 + MLT2C1 LTR ERVL 39 154 -310 3 1317 360 0 0 0 chr9 96018356 96018396 -28057776 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1317 537 250 165 65 chr9 96018396 96018580 -28057592 + MLT2C1 LTR ERVL 155 347 -50 3 1317 334 226 47 12 chr9 96018585 96018670 -28057502 + B4A SINE B4 1 88 -204 4 1317 249 33 0 0 chr9 96018848 96018878 -28057294 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1317 671 244 135 5 chr9 96019287 96019472 -28056700 + B3 SINE B2 2 210 -6 4 1317 212 259 0 66 chr9 96019699 96019790 -28056382 + (CGGGG)n Simple_repeat Simple_repeat 5 89 0 4 1317 758 221 12 52 chr9 96020372 96020544 -28055628 - RSINE1 SINE B4 0 165 1 4 1317 26 0 0 0 chr9 96021247 96021273 -28054899 + AT_rich Low_complexity Low_complexity 1 26 0 4 1317 286 264 130 19 chr9 96021297 96021405 -28054767 + RSINE1 SINE B4 11 130 -35 4 1317 472 229 14 40 chr9 96021537 96021651 -28054521 + B1_Mus1 SINE Alu 5 125 -22 4 1317 362 279 139 7 chr9 96021651 96021674 -28054498 + B4 SINE B4 90 244 -48 4 1317 330 272 50 42 chr9 96021805 96021924 -28054248 - B1F SINE Alu -1 148 29 4 1317 265 246 0 0 chr9 96021939 96022004 -28054168 + MER5C DNA MER1_type 106 170 -143 5 1317 755 201 7 7 chr9 96022237 96022377 -28053795 + B1_Mur2 SINE Alu 2 141 -8 5 1317 477 47 0 0 chr9 96022717 96022781 -28053391 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1317 634 246 0 7 chr9 96022844 96022979 -28053193 + RSINE1 SINE B4 26 159 -6 5 1317 197 159 15 45 chr9 96023553 96023619 -28052553 + CT-rich Low_complexity Low_complexity 1 64 0 5 1317 313 293 27 0 chr9 96023677 96023752 -28052420 - B1F1 SINE Alu -70 79 3 5 1317 366 123 0 0 chr9 96023846 96023903 -28052269 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1317 1185 111 20 26 chr9 96023956 96024151 -28052021 + B2_Mm2 SINE B2 2 195 0 5 1317 1245 48 0 0 chr9 96024161 96024307 -28051865 + B1_Mm SINE Alu 2 147 0 5 1317 219 103 0 0 chr9 96024307 96024346 -28051826 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1317 293 217 144 52 chr9 96025207 96025304 -28050868 - PB1D10 SINE Alu -8 109 4 6 1317 480 267 8 23 chr9 96025435 96025580 -28050592 - B3A SINE B2 -3 213 64 6 1317 692 296 18 18 chr9 96025721 96025938 -28050234 + B4A SINE B4 1 217 -75 6 1317 1118 286 50 9 chr9 96025950 96026268 -28049904 + MTE2b LTR MaLR 5 335 -44 6 1317 723 182 73 0 chr9 96026764 96026901 -28049271 - B1_Mur1 SINE Alu 0 149 3 6 1317 589 219 23 23 chr9 96026938 96027069 -28049103 + ID_B1 SINE B4 86 216 -8 6 1317 259 323 10 0 chr9 96027126 96027222 -28048950 - L1M5 LINE L1 -604 5575 5479 6 1317 609 14 0 0 chr9 96027244 96027314 -28048858 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 6 1317 250 314 9 37 chr9 96027314 96027423 -28048749 - RSINE1 SINE B4 -5 160 55 6 1317 195 42 0 0 chr9 96027457 96027481 -28048691 + (TTA)n Simple_repeat Simple_repeat 1 24 0 6 1317 981 185 64 10 chr9 96027551 96027753 -28048419 - B3 SINE B2 -3 213 1 7 1317 753 196 0 8 chr9 96027812 96027946 -28048226 - B1_Mur2 SINE Alu -9 140 8 7 1317 338 223 8 24 chr9 96028166 96028290 -28047882 + CT-rich Low_complexity Low_complexity 5 126 0 7 1317 224 298 0 130 chr9 96028292 96028309 -28047863 - PB1D10 SINE Alu -21 96 3 7 1317 228 260 0 154 chr9 96028309 96028400 -28047772 - ID_B1 SINE B4 -64 160 84 7 1317 195 129 0 0 chr9 96028431 96028462 -28047710 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1317 389 288 18 0 chr9 96028467 96028578 -28047594 - PB1D10 SINE Alu -4 113 1 7 1317 414 296 31 6 chr9 96028590 96028750 -28047422 - L1MD2 LINE L1 -5645 902 739 7 1317 291 114 0 0 chr9 96028771 96028815 -28047357 + (T)n Simple_repeat Simple_repeat 1 44 0 7 1317 382 224 104 37 chr9 96028828 96028947 -28047225 - B1F SINE Alu -8 141 13 7 1317 210 37 0 0 chr9 96028948 96028975 -28047197 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1317 861 105 52 8 chr9 96029011 96029145 -28047027 - B1_Mur3 SINE Alu 0 149 10 8 1317 329 206 23 31 chr9 96029588 96029718 -28046454 + (TA)n Simple_repeat Simple_repeat 2 130 0 8 1317 581 296 13 13 chr9 96029796 96029950 -28046222 + B3A SINE B2 11 164 -34 8 1317 189 0 0 0 chr9 96029953 96029974 -28046198 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1317 791 173 14 7 chr9 96029977 96030117 -28046055 - B1_Mus1 SINE Alu 0 148 8 8 1317 363 273 37 112 chr9 96029979 96030140 -28046032 - B4A SINE B4 -68 224 76 8 1317 189 74 0 0 chr9 96030335 96030362 -28045810 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1317 1491 219 73 23 chr9 96030408 96030805 -28045367 - MTD LTR MaLR -2 417 1 8 1317 1009 103 0 7 chr9 96030982 96031128 -28045044 + B1_Mur4 SINE Alu 6 150 0 8 1317 396 0 0 0 chr9 96031265 96031309 -28044863 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 9 1317 1058 102 70 6 chr9 96031309 96031457 -28044715 - B2_Mm2 SINE B2 -36 159 1 9 1317 1292 75 35 6 chr9 96031501 96031675 -28044497 - B2_Mm2 SINE B2 -12 183 5 9 1317 855 208 63 24 chr9 96031701 96031908 -28044264 - B3 SINE B2 0 216 2 9 1317 321 226 112 15 chr9 96031916 96032044 -28044128 - L1MC4 LINE L1 -333 7662 7457 9 1317 238 305 93 19 chr9 96032081 96032188 -28043984 + PB1D10 SINE Alu 2 116 -1 9 1317 1157 82 0 0 chr9 96032240 96032386 -28043786 + B1_Mus2 SINE Alu 2 147 0 9 1317 596 172 77 6 chr9 96032397 96032520 -28043652 + B1_Mur1 SINE Alu 28 149 0 9 1317 279 241 0 0 chr9 96032602 96032656 -28043516 + ID4 SINE ID 27 80 -3 9 1317 322 229 11 67 chr9 96032678 96032767 -28043405 + RSINE1 SINE B4 17 100 -65 9 1317 180 0 0 0 chr9 96032791 96032811 -28043361 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1317 598 251 13 58 chr9 96032830 96032995 -28043177 + B3A SINE B2 13 166 -32 1 1317 207 0 0 0 chr9 96032995 96033018 -28043154 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1317 352 283 50 139 chr9 96033018 96033053 -28043119 + B2_Mm2 SINE B2 160 195 0 1 1317 475 227 143 0 chr9 96033083 96033202 -28042970 + B1F SINE Alu 14 149 0 1 1317 769 153 261 34 chr9 96033438 96033614 -28042558 - B3 SINE B2 0 216 1 1 1317 733 52 6 20 chr9 96034115 96034230 -28041942 + B2_Mm2 SINE B2 2 119 -97 1 1317 528 241 35 0 chr9 96034286 96034402 -28041770 + PB1 SINE Alu 7 126 -1 1 1317 233 253 100 78 chr9 96034668 96034698 -28041474 - MIRm SINE MIR -139 137 112 1 1317 839 193 15 45 chr9 96034698 96034899 -28041273 + B2_Mm2 SINE B2 1 195 0 1 1317 233 253 100 78 chr9 96034899 96034958 -28041214 - MIRm SINE MIR -165 111 46 1 1317 191 333 53 0 chr9 96036207 96036282 -28039890 + L2a LINE L2 3304 3382 -44 1 1317 611 138 0 18 chr9 96036487 96036598 -28039574 + GA-rich Low_complexity Low_complexity 2 110 0 1 1317 438 154 0 0 chr9 96036657 96036735 -28039437 + CT-rich Low_complexity Low_complexity 2 79 0 1 1317 1639 5 32 0 chr9 96036743 96036930 -28039242 - B2_Mm1a SINE B2 0 193 1 1 1317 358 316 0 17 chr9 96037128 96037236 -28038936 - B1F1 SINE Alu -9 111 11 1 1317 631 164 6 151 chr9 96037420 96037592 -28038580 - B1F2 SINE Alu -1 148 2 1 1317 189 0 0 0 chr9 96037784 96037805 -28038367 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1317 367 204 133 0 chr9 96037819 96037909 -28038263 - PB1D7 SINE Alu -18 102 1 1 1317 1387 76 49 0 chr9 96038285 96038470 -28037702 - B2_Mm2 SINE B2 0 195 2 1 1317 207 0 0 0 chr9 96039047 96039070 -28037102 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1317 783 133 15 15 chr9 96039343 96039480 -28036692 - B1_Mur3 SINE Alu 0 149 13 1 1317 228 291 54 72 chr9 96039572 96039683 -28036489 - B4A SINE B4 -175 117 9 1 1317 477 197 118 29 chr9 96039685 96039821 -28036351 - B1F1 SINE Alu -1 148 1 1 1317 1093 234 5 18 chr9 96039838 96039916 -28036256 - B3 SINE B2 -1 215 141 1 1317 3876 155 32 16 chr9 96039916 96040597 -28035575 - RLTR17 LTR ERVK 0 692 1 1 1317 1093 234 5 18 chr9 96040597 96040736 -28035436 - B3 SINE B2 -76 140 1 1 1317 500 266 0 42 chr9 96040763 96040881 -28035291 + PB1D9 SINE Alu 1 113 -7 1 1317 218 220 19 57 chr9 96041260 96041313 -28034859 + B1F SINE Alu 53 103 -46 1 1317 245 281 30 50 chr9 96041707 96041808 -28034364 - B1_Mus1 SINE Alu -37 111 13 1 1317 331 277 10 23 chr9 96041729 96041826 -28034346 - ID_B1 SINE B4 -123 169 82 1 1317 302 290 50 10 chr9 96041891 96041992 -28034180 + U6 snRNA snRNA 2 106 -1 1 1317 1198 55 7 0 chr9 96042057 96042203 -28033969 + B1_Mus2 SINE Alu 1 147 0 1 1317 842 146 45 23 chr9 96042252 96042385 -28033787 + B1_Mur3 SINE Alu 1 136 -13 1 1317 270 81 0 0 chr9 96042390 96042427 -28033745 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1317 371 248 75 67 chr9 96043007 96043035 -28033137 - U4 snRNA snRNA -10 135 107 1 1317 921 254 110 66 chr9 96043035 96043247 -28032925 - MTE2a LTR MaLR 0 379 173 1 1317 189 0 0 0 chr9 96043247 96043268 -28032904 + (ATTG)n Simple_repeat Simple_repeat 3 23 0 1 1317 774 179 15 7 chr9 96043268 96043403 -28032769 - B1_Mur3 SINE Alu -12 137 2 1 1317 921 254 110 66 chr9 96043403 96043552 -28032620 - MTE2a LTR MaLR -207 172 2 1 1317 371 248 75 67 chr9 96043552 96043657 -28032515 - U4 snRNA snRNA -39 106 1 1 1317 771 243 8 119 chr9 96043690 96043933 -28032239 + B3 SINE B2 1 216 0 1 1317 322 284 12 0 chr9 96043950 96044031 -28032141 + ID SINE ID 2 83 -141 1 1317 528 154 0 0 chr9 96044438 96044542 -28031630 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1317 377 224 36 159 chr9 96044542 96044680 -28031492 - B3A SINE B2 -13 185 65 1 1317 1196 56 21 0 chr9 96044712 96044856 -28031316 - B1_Mm SINE Alu 0 147 1 1 1317 1358 71 66 0 chr9 96044859 96045042 -28031130 - B2_Mm2 SINE B2 0 195 1 1 1317 531 304 178 22 chr9 96045146 96045615 -28030557 - Lx9 LINE L1 -22 7622 7081 1 1317 239 339 48 0 chr9 96046826 96046950 -28029222 + L1M2c LINE L1 1831 1960 -4829 1 1317 246 342 110 3 chr9 96047135 96047452 -28028720 + L1_Mur1 LINE L1 1544 1904 -3943 1 1317 1547 62 5 0 chr9 96047572 96047764 -28028408 + B2_Mm1a SINE B2 1 193 0 1 1317 264 228 78 134 chr9 96047909 96048051 -28028121 - RSINE1 SINE B4 -27 138 5 1 1317 618 190 0 33 chr9 96048108 96048228 -28027944 + B1_Mur1 SINE Alu 34 149 0 1 1317 376 215 95 21 chr9 96048231 96048326 -28027846 + B1_Mur2 SINE Alu 19 149 0 1 1317 829 219 42 16 chr9 96048336 96048526 -28027646 + B3A SINE B2 1 195 -3 1 1317 501 234 97 14 chr9 96048537 96048754 -28027418 + L1M2 LINE L1 4989 5223 -920 1 1317 1220 280 43 70 chr9 96048785 96048907 -28027265 + Lx8 LINE L1 5332 5448 -432 1 1317 616 191 111 0 chr9 96048907 96049033 -28027139 + B1_Mur2 SINE Alu 1 140 -9 1 1317 1220 280 44 68 chr9 96049033 96049498 -28026674 + Lx8 LINE L1 5449 5908 -1565 1 1317 186 118 0 0 chr9 96049498 96049532 -28026640 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 1 1317 824 191 0 20 chr9 96049811 96049961 -28026211 + B3 SINE B2 70 216 0 1 1317 544 309 29 0 chr9 96050123 96050262 -28025910 + RSINE1 SINE B4 3 145 -20 1 1317 458 260 91 26 chr9 96050265 96050419 -28025753 + RSINE1 SINE B4 2 165 0 1 1317 254 26 53 0 chr9 96050999 96051037 -28025135 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1317 603 200 15 30 chr9 96051315 96051449 -28024723 + B1_Mur2 SINE Alu 1 132 -17 1 1317 272 271 28 14 chr9 96051456 96051527 -28024645 + BC1_Mm scRNA scRNA 13 84 -68 1 1317 952 213 69 0 chr9 96051850 96052052 -28024120 - B3 SINE B2 0 216 1 1 1317 502 228 10 29 chr9 96052235 96052339 -28023833 - B1F SINE Alu -15 134 33 1 1317 327 113 0 0 chr9 96052355 96052408 -28023764 + (CAT)n Simple_repeat Simple_repeat 2 54 0 1 1317 307 266 38 0 chr9 96052408 96052487 -28023685 - PB1D10 SINE Alu -10 107 26 1 1317 456 35 0 0 chr9 96052549 96052607 -28023565 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1317 607 266 7 14 chr9 96052619 96052764 -28023408 - RSINE1 SINE B4 -19 146 3 1 1317 282 235 110 2 chr9 96052837 96052931 -28023241 + PB1D10 SINE Alu 13 111 -6 1 1317 245 290 43 0 chr9 96052941 96053010 -28023162 + ID4 SINE ID 1 72 -11 1 1317 575 257 6 51 chr9 96053812 96053968 -28022204 + B1_Mur4 SINE Alu 2 150 0 1 1317 257 146 24 0 chr9 96054129 96054170 -28022002 - ID4 SINE ID -11 72 31 1 1317 402 221 173 0 chr9 96054276 96054403 -28021769 - B1F2 SINE Alu 0 149 1 1 1317 297 282 12 25 chr9 96054403 96054483 -28021689 - ID SINE ID -144 80 2 1 1317 789 164 0 8 chr9 96054483 96054596 -28021576 - B1_Mur4 SINE Alu -37 113 2 1 1317 389 203 34 135 chr9 96054596 96054629 -28021543 - MT2B LTR ERVL -452 149 132 1 1317 269 261 15 0 chr9 96054872 96054937 -28021235 + ID4_ SINE ID 14 79 -4 1 1317 250 146 0 0 chr9 96055142 96055197 -28020975 - Lx2B LINE L1 -1 6999 6945 1 1317 216 0 0 0 chr9 96055198 96055222 -28020950 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 1 1317 285 29 0 0 chr9 96055222 96055256 -28020916 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1317 1187 48 0 7 chr9 96055259 96055407 -28020765 - B1_Mus2 SINE Alu 0 147 1 1 1317 1152 62 7 0 chr9 96056103 96056248 -28019924 + B1_Mus1 SINE Alu 3 148 0 1 1317 3515 25 9 180 chr9 96056256 96056829 -28019343 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1317 474 101 0 0 chr9 96056880 96056949 -28019223 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 1 1317 279 251 27 142 chr9 96056965 96057076 -28019096 + B1_Mus1 SINE Alu 18 115 -2 1 1317 908 156 7 26 chr9 96057177 96057328 -28018844 + B1_Mur2 SINE Alu 1 148 -1 1 1317 1603 22 0 0 chr9 96057331 96057509 -28018663 + B2_Mm1a SINE B2 2 179 -14 1 1317 261 57 0 0 chr9 96057509 96057544 -28018628 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1317 839 107 20 48 chr9 96057622 96057769 -28018403 - B1_Mur4 SINE Alu -7 143 1 1 1317 182 62 31 0 chr9 96057905 96057937 -28018235 + (CACCC)n Simple_repeat Simple_repeat 3 35 0 1 1317 254 270 65 33 chr9 96058004 96058096 -28018076 - RSINE1 SINE B4 -60 105 11 1 1317 1223 214 112 39 chr9 96058178 96058554 -28017618 - MTD LTR MaLR 0 379 1 1 1317 195 42 0 0 chr9 96059166 96059190 -28016982 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1317 1112 75 0 20 chr9 96059376 96059526 -28016646 + B1_Mus1 SINE Alu 2 148 0 1 1317 462 241 51 29 chr9 96059553 96059690 -28016482 + RSINE1 SINE B4 3 142 -23 1 1317 4961 53 13 11 chr9 96059886 96060514 -28015658 - L1_Mus2 LINE L1 -1 6565 5937 1 1317 243 320 0 28 chr9 96060634 96060740 -28015432 + CT-rich Low_complexity Low_complexity 3 105 0 1 1317 272 304 0 0 chr9 96060644 96060713 -28015459 + C-rich Low_complexity Low_complexity 1 69 0 1 1317 372 308 106 16 chr9 96060858 96061046 -28015126 + B4 SINE B4 1 205 -87 1 1317 723 171 21 21 chr9 96060933 96061076 -28015096 + B1_Mur3 SINE Alu 7 149 0 1 1317 264 262 0 0 chr9 96061753 96061856 -28014316 + (CA)n Simple_repeat Simple_repeat 1 103 0 1 1317 225 158 97 0 chr9 96061868 96061922 -28014250 + B1_Mur2 SINE Alu 50 134 -15 1 1317 303 315 72 27 chr9 96062197 96062308 -28013864 + PB1 SINE Alu 5 120 -7 2 1317 573 124 66 9 chr9 96062659 96062765 -28013407 + B1_Mur3 SINE Alu 31 142 -7 2 1317 316 200 46 0 chr9 96063126 96063191 -28012981 + B1F SINE Alu 19 86 -63 2 1317 585 193 215 23 chr9 96063203 96063493 -28012679 - MTD LTR MaLR 0 419 31 2 1317 1938 169 191 5 chr9 96063493 96063869 -28012303 - RLTR41 LTR ERV1 0 446 1 2 1317 585 185 266 27 chr9 96063869 96063896 -28012276 - MTD LTR MaLR -389 30 3 2 1317 3308 36 3 0 chr9 96064175 96064559 -28011613 - IAPEY_LTR LTR ERVK 0 385 1 2 1317 1222 41 0 0 chr9 96064801 96064946 -28011226 + B1_Mus2 SINE Alu 1 145 -2 2 1317 183 80 0 0 chr9 96064946 96064971 -28011201 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2 1317 228 268 70 0 chr9 96064980 96065051 -28011121 + ID4 SINE ID 2 77 -6 2 1317 584 167 8 0 chr9 96065051 96065171 -28011001 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 2 1317 930 227 18 0 chr9 96065267 96065487 -28010685 - ID_B1 SINE B4 0 224 1 2 1317 253 361 0 0 chr9 96065607 96065690 -28010482 + CT-rich Low_complexity Low_complexity 2 84 0 2 1317 241 330 134 0 chr9 96065690 96065787 -28010385 - PB1D7 SINE Alu -7 113 4 2 1317 324 264 148 129 chr9 96065835 96066052 -28010120 + ID_B1 SINE B4 4 224 0 2 1317 258 256 109 35 chr9 96066402 96066604 -28009568 - L1MD2 LINE L1 -5125 1515 1299 2 1317 1305 82 5 81 chr9 96066604 96066815 -28009357 - B2_Mm2 SINE B2 0 195 1 2 1317 689 202 171 0 chr9 96066834 96066992 -28009180 - B3 SINE B2 0 216 32 2 1317 227 31 0 30 chr9 96066995 96067028 -28009144 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 2 1317 621 209 52 15 chr9 96067030 96067166 -28009006 - B1_Mur4 SINE Alu -6 144 4 2 1317 235 95 143 0 chr9 96067386 96067428 -28008744 - L1MD2 LINE L1 -5486 1061 1014 2 1317 462 238 125 10 chr9 96067433 96067619 -28008553 - B3 SINE B2 0 195 1 2 1317 402 233 60 27 chr9 96067624 96067774 -28008398 - L1MD2 LINE L1 -5535 1012 858 2 1317 189 107 0 0 chr9 96067991 96068019 -28008153 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 2 1317 234 146 62 0 chr9 96068078 96068126 -28008046 - Lx6 LINE L1 -16 7444 7394 2 1317 541 231 142 32 chr9 96068141 96068450 -28007722 - RMER10A LTR ERVL -25 417 75 2 1317 587 178 146 8 chr9 96068562 96068692 -28007480 + B1_Mus1 SINE Alu 1 148 0 2 1317 285 146 0 0 chr9 96068697 96068745 -28007427 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1317 484 205 93 68 chr9 96068751 96068808 -28007364 - Lx7 LINE L1 -138 7558 7490 2 1317 1662 22 0 0 chr9 96068808 96068993 -28007179 + B2_Mm1a SINE B2 3 187 -6 2 1317 484 205 93 68 chr9 96068993 96069097 -28007075 - Lx7 LINE L1 -207 7489 7393 2 1317 471 340 7 0 chr9 96069178 96069319 -28006853 - ID_B1 SINE B4 -1 223 82 2 1317 516 275 60 102 chr9 96069353 96069486 -28006686 - RSINE1 SINE B4 -6 159 28 2 1317 3820 116 89 60 chr9 96069486 96070219 -28005953 + RMER6A LTR ERVK 3 756 0 2 1317 516 275 60 102 chr9 96070219 96070251 -28005921 - RSINE1 SINE B4 -138 27 1 2 1317 303 225 105 63 chr9 96070289 96070384 -28005788 - ID_B1 SINE B4 -10 214 116 2 1317 329 288 0 33 chr9 96070406 96070528 -28005644 - Charlie21a DNA MER1_type -670 543 426 2 1317 796 249 70 0 chr9 96070760 96070829 -28005343 + ID_B1 SINE B4 12 93 -131 2 1317 341 263 39 92 chr9 96070829 96070959 -28005213 + PB1 SINE Alu 1 123 -4 2 1317 489 287 21 0 chr9 96070973 96071116 -28005056 + ID_B1 SINE B4 79 224 0 2 1317 478 238 0 38 chr9 96071299 96071404 -28004768 - PB1D7 SINE Alu -8 112 12 2 1317 217 122 49 0 chr9 96071440 96071481 -28004691 + A-rich Low_complexity Low_complexity 5 47 0 2 1317 645 68 29 0 chr9 96071739 96071842 -28004330 - L1Md_F2 LINE L1 -3 6579 6474 2 1317 512 222 0 64 chr9 96072228 96072353 -28003819 + PB1D9 SINE Alu 3 119 -1 2 1317 208 231 0 0 chr9 96072367 96072406 -28003766 + polypurine Low_complexity Low_complexity 4 42 0 2 1317 599 275 0 0 chr9 96072719 96072861 -28003311 + B3A SINE B2 1 142 -56 2 1317 2129 131 34 25 chr9 96072864 96073217 -28002955 - RLTR15 LTR ERVK -3 356 1 2 1317 233 57 29 0 chr9 96073237 96073272 -28002900 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 2 1317 425 187 0 0 chr9 96073447 96073522 -28002650 + ID_B1 SINE B4 150 224 0 2 1317 258 32 0 0 chr9 96073609 96073640 -28002532 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1317 516 214 82 50 chr9 96073707 96073889 -28002283 - RMER15 LTR ERVL 0 575 388 2 1317 558 0 0 0 chr9 96073903 96073965 -28002207 + (GAGAA)n Simple_repeat Simple_repeat 4 65 0 2 1317 206 121 0 0 chr9 96074348 96074381 -28001791 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1317 345 286 47 23 chr9 96074486 96074624 -28001548 + B3 SINE B2 34 183 -15 2 1317 232 268 149 11 chr9 96074688 96074775 -28001397 + ID_B1 SINE B4 123 221 -3 2 1317 704 259 7 7 chr9 96074777 96074925 -28001247 + B1_Mur1 SINE Alu 2 149 0 2 1317 229 238 92 31 chr9 96074942 96075007 -28001165 + B1F1 SINE Alu 11 79 -70 2 1317 182 37 0 36 chr9 96075399 96075427 -28000745 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1317 516 207 43 8 chr9 96075427 96075544 -28000628 - B1F1 SINE Alu -11 138 18 2 1317 282 315 14 84 chr9 96075621 96075763 -28000409 - RSINE1 SINE B4 0 165 34 2 1318 27 0 0 0 chr9 96075832 96075859 -28000313 + AT_rich Low_complexity Low_complexity 1 27 0 2 1318 946 206 57 0 chr9 96075864 96076058 -28000114 - B3 SINE B2 -5 211 7 2 1318 979 206 24 10 chr9 96076072 96076278 -27999894 + B3 SINE B2 1 209 -7 2 1318 241 278 101 93 chr9 96077192 96077450 -27998722 + Lx8 LINE L1 7212 7471 -2 2 1318 237 245 215 9 chr9 96077495 96077602 -27998570 + ID_B1 SINE B4 79 207 -17 2 1318 241 271 29 0 chr9 96077687 96077757 -27998415 + ID4_ SINE ID 2 73 -10 2 1318 424 286 36 31 chr9 96078333 96078528 -27997644 - MER31A LTR ERV1 -149 336 141 2 1318 879 133 34 40 chr9 96078595 96078744 -27997428 + B1_Mur4 SINE Alu 2 149 -1 2 1318 345 47 0 0 chr9 96078744 96078787 -27997385 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1318 267 79 0 0 chr9 96078953 96078991 -27997181 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1318 1000 135 0 0 chr9 96078993 96079134 -27997038 - B1_Mur4 SINE Alu -7 143 3 2 1318 234 0 0 0 chr9 96079630 96079656 -27996516 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 2 1318 377 275 36 9 chr9 96080122 96080232 -27995940 - PB1D10 SINE Alu -2 115 3 2 1318 277 310 101 0 chr9 96080289 96080418 -27995754 + B1F SINE Alu 2 143 -6 2 1318 218 342 38 0 chr9 96080420 96080499 -27995673 - PB1D10 SINE Alu 0 117 36 2 1318 243 0 0 0 chr9 96080647 96080674 -27995498 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1318 344 265 0 12 chr9 96080679 96080763 -27995409 - PB1D10 SINE Alu -15 102 20 2 1318 423 299 40 53 chr9 96081403 96081555 -27994617 + RSINE1 SINE B4 5 154 -11 2 1318 835 151 14 0 chr9 96082335 96082481 -27993691 - B1_Mur2 SINE Alu 0 149 2 2 1318 441 292 118 11 chr9 96082481 96082661 -27993511 - MER20 DNA MER1_type -19 200 1 2 1318 267 254 0 0 chr9 96082858 96082917 -27993255 - ID2 SINE ID -17 66 8 2 1318 528 172 0 0 chr9 96083054 96083141 -27993031 - B1F SINE Alu -62 87 1 2 1318 255 244 0 131 chr9 96083055 96083154 -27993018 - MT2B2 LTR ERVL -343 241 156 2 1318 565 140 31 23 chr9 96083726 96083849 -27992323 - PB1D9 SINE Alu 0 120 3 2 1318 356 229 9 55 chr9 96084344 96084527 -27991645 - L1MD LINE L1 -789 5570 5304 2 1318 890 167 0 0 chr9 96085094 96085238 -27990934 - B1_Mur3 SINE Alu 0 149 6 2 1318 246 302 11 34 chr9 96085161 96085250 -27990922 - B4A SINE B4 -125 167 81 2 1318 3169 174 63 5 chr9 96085266 96085872 -27990300 - RMER1A Other Other 0 1030 390 2 1318 620 305 16 16 chr9 96085886 96086079 -27990093 - ID_B1 SINE B4 -27 197 5 2 1318 479 259 72 0 chr9 96086135 96086274 -27989898 - B1F SINE Alu 0 149 1 2 1318 284 64 21 0 chr9 96086287 96086334 -27989838 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1318 816 147 0 0 chr9 96086378 96086507 -27989665 - B3 SINE B2 -86 130 2 2 1318 951 124 13 0 chr9 96086914 96087067 -27989105 - URR1B DNA MER1_type -1 224 70 2 1318 4504 94 20 65 chr9 96087180 96087899 -27988273 + RMER17A LTR ERVK 1 686 -65 2 1318 1369 75 32 0 chr9 96087899 96088085 -27988087 + B2_Mm1a SINE B2 1 192 -1 2 1318 4504 94 20 65 chr9 96088085 96088151 -27988021 + RMER17A LTR ERVK 687 751 0 2 1318 343 217 91 112 chr9 96088253 96088266 -27987906 - B2_Mm1t SINE B2 -1 192 180 2 1318 1155 68 0 0 chr9 96088266 96088412 -27987760 - B1_Mm SINE Alu 0 147 2 2 1318 568 218 94 109 chr9 96088412 96088594 -27987578 - B3A SINE B2 0 198 1 2 1318 572 253 32 0 chr9 96088600 96088758 -27987414 + MTE2a LTR MaLR 217 379 0 2 1318 716 187 104 0 chr9 96088835 96088969 -27987203 + B1_Mur2 SINE Alu 2 149 0 2 1318 275 71 24 0 chr9 96089135 96089177 -27986995 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2 1318 361 36 54 0 chr9 96089331 96089387 -27986785 - B2_Mm1a SINE B2 -8 185 127 2 1318 1289 70 53 0 chr9 96089423 96089594 -27986578 - B2_Mm2 SINE B2 -15 180 1 2 1318 314 327 124 0 chr9 96089692 96089845 -27986327 + LTR16E2 LTR ERVL 360 531 -37 2 1318 571 240 19 52 chr9 96089849 96090003 -27986169 + B1_Mur2 SINE Alu 1 149 0 2 1318 575 252 137 40 chr9 96090045 96090293 -27985879 + B4A SINE B4 2 273 -19 2 1318 264 238 0 16 chr9 96090594 96090658 -27985514 - ID_B1 SINE B4 -2 222 160 3 1318 256 169 10 0 chr9 96090664 96090721 -27985451 + B1F SINE Alu 49 136 -13 3 1318 4962 53 10 2 chr9 96090736 96091355 -27984817 - L1_Mus1 LINE L1 0 6567 5944 3 1318 1492 65 5 0 chr9 96091432 96091618 -27984554 + B2_Mm1a SINE B2 2 188 -5 3 1318 292 277 125 21 chr9 96091938 96092082 -27984090 + MER5A1 DNA MER1_type 3 161 -5 3 1318 366 80 0 0 chr9 96092215 96092265 -27983907 + (TCC)n Simple_repeat Simple_repeat 2 51 0 3 1318 630 176 0 8 chr9 96092265 96092385 -27983787 - B1_Mur4 SINE Alu 0 150 32 3 1318 346 257 65 111 chr9 96092428 96092581 -27983591 - RSINE1 SINE B4 0 165 20 3 1318 2220 152 38 10 chr9 96092583 96092981 -27983191 + MTC LTR MaLR 5 413 -8 3 1318 284 304 98 0 chr9 96093028 96093120 -27983052 - ID_B1 SINE B4 -36 188 88 3 1318 21 0 0 0 chr9 96093211 96093232 -27982940 + AT_rich Low_complexity Low_complexity 1 21 0 3 1318 278 333 0 13 chr9 96093359 96093435 -27982737 - PB1D10 SINE Alu -37 80 6 3 1318 293 143 29 0 chr9 96094403 96094473 -27981699 + T-rich Low_complexity Low_complexity 4 75 0 3 1318 752 200 28 0 chr9 96094473 96094618 -27981554 - B1_Mur1 SINE Alu 0 149 1 3 1318 519 301 0 0 chr9 96094671 96094794 -27981378 + RSINE1 SINE B4 8 130 -35 3 1318 207 0 0 0 chr9 96095020 96095043 -27981129 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1318 791 200 0 0 chr9 96095044 96095179 -27980993 - B1_Mus1 SINE Alu -12 136 2 3 1318 378 0 0 0 chr9 96095486 96095528 -27980644 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 3 1318 295 313 40 0 chr9 96095697 96095796 -27980376 + L2a LINE L2 3289 3391 -35 3 1318 580 250 0 0 chr9 96095938 96096070 -27980102 - B1_Mur1 SINE Alu -12 137 6 3 1318 236 357 30 38 chr9 96095974 96096105 -27980067 - B4A SINE B4 -102 190 61 3 1318 848 102 242 33 chr9 96097840 96098022 -27978150 - URR1B DNA MER1_type 0 225 6 3 1318 527 216 14 50 chr9 96098887 96099028 -27977144 + RSINE1 SINE B4 2 137 -28 3 1318 261 83 0 0 chr9 96099195 96099231 -27976941 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 1318 315 143 14 18 chr9 96099248 96099314 -27976858 - B2_Mm2 SINE B2 -82 116 46 3 1318 1167 120 23 0 chr9 96099379 96099554 -27976618 - B2_Mm1t SINE B2 -14 179 1 3 1318 427 261 47 95 chr9 96099636 96099784 -27976388 - B1F SINE Alu 0 149 9 3 1318 1536 68 0 5 chr9 96099808 96100001 -27976171 - B2_Mm2 SINE B2 -2 193 2 3 1318 301 291 0 0 chr9 96100114 96100193 -27975979 - B1F SINE Alu -18 131 53 3 1318 810 152 8 0 chr9 96100268 96100400 -27975772 - B1_Mur2 SINE Alu -16 133 1 3 1318 251 323 91 50 chr9 96100551 96100750 -27975422 - B4 SINE B4 -2 290 84 3 1318 430 291 55 0 chr9 96100817 96100944 -27975228 - B1F SINE Alu 0 149 16 3 1318 249 57 0 0 chr9 96101007 96101042 -27975130 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1318 237 189 57 0 chr9 96101063 96101116 -27975056 + MIR SINE MIR 118 173 -89 3 1318 234 0 0 0 chr9 96101241 96101267 -27974905 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1318 484 240 34 157 chr9 96101310 96101488 -27974684 - B3A SINE B2 -2 193 38 3 1318 243 188 0 0 chr9 96101596 96101644 -27974528 + (CATA)n Simple_repeat Simple_repeat 1 48 0 3 1318 560 136 173 0 chr9 96101650 96101760 -27974412 - B1_Mur4 SINE Alu -13 137 9 3 1318 505 243 130 23 chr9 96101810 96101987 -27974185 - B3A SINE B2 -1 197 2 3 1318 277 323 31 20 chr9 96102136 96102234 -27973938 + RSINE1 SINE B4 5 103 -62 3 1318 281 256 39 0 chr9 96102608 96102686 -27973486 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 3 1318 357 75 0 0 chr9 96102832 96102885 -27973287 + (CATA)n Simple_repeat Simple_repeat 2 54 0 3 1318 837 229 147 4 chr9 96102979 96103211 -27972961 - B4A SINE B4 -18 274 10 3 1318 357 24 0 0 chr9 96103437 96103479 -27972693 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 3 1318 1125 128 0 0 chr9 96103479 96103658 -27972514 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 1318 512 214 0 15 chr9 96103661 96103794 -27972378 + CT-rich Low_complexity Low_complexity 3 133 0 3 1318 552 30 0 0 chr9 96103794 96103860 -27972312 + (TCCCC)n Simple_repeat Simple_repeat 2 67 0 3 1318 777 211 14 0 chr9 96103863 96104010 -27972162 - B1F2 SINE Alu 0 149 1 3 1318 1084 211 23 117 chr9 96104035 96104136 -27972036 - MTE2b LTR MaLR 0 374 301 3 1318 657 235 74 37 chr9 96104136 96104326 -27971846 - B3A SINE B2 0 198 2 3 1318 1084 239 75 100 chr9 96104326 96104594 -27971578 - MTE2b LTR MaLR -63 316 28 3 1318 757 276 5 32 chr9 96104919 96105106 -27971066 + B3 SINE B2 1 182 -34 3 1318 989 77 210 6 chr9 96105155 96105312 -27970860 - B2_Mm2 SINE B2 -5 190 2 3 1318 468 192 135 8 chr9 96105330 96105462 -27970710 + B3 SINE B2 20 168 -30 3 1318 26 30 0 0 chr9 96105476 96105509 -27970663 + AT_rich Low_complexity Low_complexity 1 33 0 3 1318 1400 97 0 5 chr9 96105513 96105700 -27970472 + B2_Mm2 SINE B2 1 186 -9 3 1318 243 235 132 16 chr9 96105715 96105836 -27970336 - L1ME3A LINE L1 -20 6153 6019 3 1318 213 188 43 14 chr9 96105942 96106012 -27970160 + CT-rich Low_complexity Low_complexity 5 76 0 3 1318 952 205 15 20 chr9 96106099 96106298 -27969874 - B3A SINE B2 0 198 1 3 1318 649 284 72 24 chr9 96106303 96106512 -27969660 - ID_B1 SINE B4 -3 221 3 3 1318 392 189 103 86 chr9 96106675 96106791 -27969381 - B4A SINE B4 -132 160 43 3 1318 42 0 0 0 chr9 96107380 96107422 -27968750 + AT_rich Low_complexity Low_complexity 1 42 0 3 1318 1043 114 0 0 chr9 96107424 96107582 -27968590 + B2_Mm2 SINE B2 1 158 -37 3 1318 324 0 0 0 chr9 96107583 96107619 -27968553 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 3 1318 545 192 164 0 chr9 96107634 96107780 -27968392 - B3A SINE B2 -24 174 5 3 1318 628 249 23 29 chr9 96107834 96108008 -27968164 + B3A SINE B2 1 173 -25 3 1318 278 327 129 0 chr9 96108231 96108332 -27967840 - ID_B1 SINE B4 -26 198 85 3 1318 431 264 120 0 chr9 96108375 96108500 -27967672 - ID_B1 SINE B4 0 224 85 3 1318 930 189 29 0 chr9 96108580 96108755 -27967417 - B3A SINE B2 -18 180 1 3 1318 237 189 19 0 chr9 96109027 96109080 -27967092 - L1MB2 LINE L1 -15 6156 6103 3 1318 953 88 0 0 chr9 96109081 96109217 -27966955 + B1_Mus1 SINE Alu 1 136 -12 3 1318 288 0 0 0 chr9 96109218 96109250 -27966922 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1318 890 284 89 18 chr9 96109274 96109668 -27966504 - L1MB3 LINE L1 -86 6097 5676 3 1318 256 183 0 0 chr9 96109710 96109770 -27966402 - L1MD LINE L1 -690 5472 5413 3 1318 8520 34 6 7 chr9 96109788 96111430 -27964742 - L1Md_F2 LINE L1 0 6582 4941 3 1318 288 188 0 28 chr9 96111433 96111504 -27964668 - L1MD LINE L1 -755 5425 5357 3 1318 303 262 93 23 chr9 96111553 96111639 -27964533 - PB1 SINE Alu -17 110 19 3 1318 284 147 105 45 chr9 96111639 96111722 -27964450 - L1MD LINE L1 -815 5331 5245 3 1318 441 103 0 0 chr9 96111722 96111790 -27964382 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1318 613 261 14 0 chr9 96111797 96111939 -27964233 - B4A SINE B4 -18 274 131 3 1318 1420 69 5 5 chr9 96112038 96112228 -27963944 - B2_Mm2 SINE B2 -5 190 1 3 1318 434 257 73 0 chr9 96112334 96112443 -27963729 - PB1D10 SINE Alu 0 117 1 3 1318 323 284 61 44 chr9 96112862 96112976 -27963196 - PB1D10 SINE Alu -1 116 1 3 1318 510 226 0 16 chr9 96113096 96113214 -27962958 - PB1D7 SINE Alu -3 117 5 3 1318 212 322 189 14 chr9 96113214 96113244 -27962928 - B4 SINE B4 -70 222 49 3 1318 687 292 66 25 chr9 96113297 96113662 -27962510 - Lx8 LINE L1 -136 7337 6958 3 1318 238 160 60 0 chr9 96113664 96113714 -27962458 + RMER15 LTR ERVL 1 53 -522 3 1318 1552 241 198 21 chr9 96113720 96114074 -27962098 + RMER15 LTR ERVL 22 456 -119 3 1318 1013 84 0 40 chr9 96114074 96114218 -27961954 + B1_Mus1 SINE Alu 2 139 -9 3 1318 201 26 0 73 chr9 96114218 96114259 -27961913 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1318 1552 241 198 21 chr9 96114259 96114379 -27961793 + RMER15 LTR ERVL 457 575 0 3 1318 297 229 0 35 chr9 96114383 96114469 -27961703 - Lx8 LINE L1 -521 6952 6870 3 1318 1173 285 107 31 chr9 96114536 96115050 -27961122 - Lx8 LINE L1 -575 6898 6346 3 1318 1776 184 73 18 chr9 96115221 96115604 -27960568 - MTD LTR MaLR -2 417 14 3 1318 1877 270 62 52 chr9 96115678 96116269 -27959903 - Lx9 LINE L1 -173 7471 6885 3 1318 1238 54 0 0 chr9 96116269 96116416 -27959756 - B1_Mus2 SINE Alu 0 147 1 3 1318 1877 270 62 52 chr9 96116416 96116594 -27959578 - Lx9 LINE L1 -760 6884 6694 3 1318 943 282 24 5 chr9 96116596 96116803 -27959369 - ID_B1 SINE B4 -3 221 11 3 1318 443 170 151 57 chr9 96116904 96117010 -27959162 + B1_Mur2 SINE Alu 34 149 0 3 1318 300 295 8 97 chr9 96117249 96117373 -27958799 - PB1D10 SINE Alu -1 116 4 3 1318 181 163 41 0 chr9 96117381 96117430 -27958742 + (TATG)n Simple_repeat Simple_repeat 4 54 0 3 1318 307 292 28 111 chr9 96117539 96117647 -27958525 - B4A SINE B4 -146 146 48 3 1318 403 151 54 65 chr9 96117748 96117840 -27958332 - B2_Mm2 SINE B2 -103 92 2 3 1318 207 0 0 0 chr9 96117850 96117873 -27958299 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1318 397 53 0 0 chr9 96117873 96117930 -27958242 - B1_Mur4 SINE Alu 0 150 94 3 1318 679 212 8 0 chr9 96117931 96118049 -27958123 - B3 SINE B2 -96 120 2 3 1318 282 362 14 14 chr9 96118126 96118266 -27957906 + B1F SINE Alu 1 140 -9 3 1318 26 30 0 0 chr9 96118292 96118325 -27957847 + AT_rich Low_complexity Low_complexity 1 33 0 3 1318 993 154 22 11 chr9 96118335 96118519 -27957653 + B2_Mm2 SINE B2 1 186 -9 3 1318 347 321 122 65 chr9 96118744 96119070 -27957102 - L2c LINE L2 -64 3323 2987 4 1318 443 284 94 8 chr9 96119083 96119200 -27956972 + RSINE1 SINE B4 11 137 -28 4 1318 189 0 0 0 chr9 96119203 96119224 -27956948 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1318 433 219 0 30 chr9 96119342 96119452 -27956720 - ID4 SINE ID -41 111 11 4 1318 1055 127 0 7 chr9 96120142 96120293 -27955879 - B1_Mur4 SINE Alu 0 150 1 4 1318 232 269 149 0 chr9 96120788 96120855 -27955317 - ID SINE ID -145 79 3 4 1318 226 149 0 54 chr9 96121406 96121498 -27954674 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 1318 269 186 82 41 chr9 96121526 96121599 -27954573 - Lx8 LINE L1 -115 7358 7283 4 1318 287 278 19 67 chr9 96121629 96121733 -27954439 - RSINE1 SINE B4 0 165 67 4 1318 433 260 10 10 chr9 96121783 96121884 -27954288 - ID_B1 SINE B4 -8 216 116 4 1318 384 275 33 66 chr9 96122005 96122157 -27954015 - B1F SINE Alu 0 149 3 4 1318 477 323 175 55 chr9 96122225 96122472 -27953700 - L1MC4 LINE L1 -29 8013 7757 4 1318 297 304 69 0 chr9 96122472 96122568 -27953604 + PB1D10 SINE Alu 5 107 -10 4 1318 578 51 0 13 chr9 96122568 96122647 -27953525 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 4 1318 477 323 175 55 chr9 96122652 96123020 -27953152 - L1MC4 LINE L1 -286 7756 7324 4 1318 303 281 84 12 chr9 96123033 96123199 -27952973 - L1MC4 LINE L1 -749 7293 7116 4 1318 284 282 56 28 chr9 96123322 96123464 -27952708 + MIR SINE MIR 86 234 -34 4 1318 449 198 228 0 chr9 96124566 96124667 -27951505 + PB1 SINE Alu 1 124 -3 4 1318 231 351 32 11 chr9 96124704 96124799 -27951373 - MLT1K LTR MaLR -70 525 429 4 1318 337 325 0 17 chr9 96125224 96125340 -27950832 - PB1D10 SINE Alu 0 117 4 4 1318 483 280 30 60 chr9 96125806 96125973 -27950199 - RSINE1 SINE B4 0 165 4 4 1318 261 271 165 0 chr9 96125983 96126068 -27950104 - PB1D10 SINE Alu -9 108 10 4 1318 352 291 42 83 chr9 96126086 96126206 -27949966 - PB1D7 SINE Alu -4 116 2 4 1318 246 333 0 0 chr9 96126420 96126486 -27949686 - ID4 SINE ID -16 67 2 4 1318 243 0 0 0 chr9 96126594 96126621 -27949551 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1318 881 176 14 0 chr9 96126957 96127099 -27949073 - B1_Mur4 SINE Alu 0 150 7 4 1318 22 80 0 0 chr9 96127210 96127260 -27948912 + AT_rich Low_complexity Low_complexity 1 50 0 4 1318 1513 33 11 5 chr9 96127380 96127565 -27948607 - B2_Mm2 SINE B2 -9 186 1 4 1318 629 213 52 0 chr9 96127719 96127855 -27948317 - B1F1 SINE Alu -2 147 5 4 1318 469 301 94 39 chr9 96127895 96127909 -27948263 - B3A SINE B2 -6 192 181 4 1318 261 0 0 0 chr9 96127909 96127938 -27948234 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1318 469 301 94 39 chr9 96127938 96128103 -27948069 - B3A SINE B2 -18 180 3 4 1318 523 190 121 83 chr9 96128116 96128154 -27948018 - B1_Mur1 SINE Alu -1 148 102 4 1318 1612 149 24 236 chr9 96128164 96128665 -27947507 - RMER10B LTR ERVL 0 398 4 4 1318 523 190 121 83 chr9 96128665 96128748 -27947424 - B1_Mur1 SINE Alu -48 101 12 4 1318 284 287 26 69 chr9 96128748 96128770 -27947402 - MT2B LTR ERVL -346 255 155 4 1318 494 263 224 0 chr9 96128793 96128817 -27947355 - B3A SINE B2 -10 188 165 4 1318 696 185 37 0 chr9 96128817 96128952 -27947220 - B1_Mur2 SINE Alu -8 141 2 4 1318 494 263 224 0 chr9 96128952 96129079 -27947093 - B3A SINE B2 -34 164 4 4 1318 1133 123 0 0 chr9 96129318 96129480 -27946692 - B2_Mm2 SINE B2 -33 162 1 4 1318 25 31 0 0 chr9 96129608 96129640 -27946532 + AT_rich Low_complexity Low_complexity 1 32 0 4 1318 1158 215 9 0 chr9 96130252 96130466 -27945706 + B3 SINE B2 1 216 0 4 1318 690 226 170 83 chr9 96130573 96130941 -27945231 - RLTR12B LTR ERVK -162 366 2 4 1318 734 174 98 0 chr9 96131170 96131302 -27944870 + B1_Mur4 SINE Alu 3 147 -3 4 1318 204 125 0 0 chr9 96131302 96131334 -27944838 + (TGG)n Simple_repeat Simple_repeat 3 34 0 4 1318 695 168 309 6 chr9 96131334 96131496 -27944676 + B3 SINE B2 2 212 -4 4 1318 239 0 32 0 chr9 96131766 96131797 -27944375 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1318 250 140 240 0 chr9 96131797 96131847 -27944325 - B1_Mus2 SINE Alu -7 140 79 4 1318 432 260 42 83 chr9 96131880 96132048 -27944124 - RSINE1 SINE B4 0 165 5 4 1318 548 274 67 0 chr9 96132114 96132249 -27943923 + ID_B1 SINE B4 81 224 0 4 1318 363 266 13 0 chr9 96132716 96132795 -27943377 - ID4 SINE ID -2 81 2 4 1318 24 32 0 0 chr9 96133031 96133062 -27943110 + AT_rich Low_complexity Low_complexity 1 31 0 4 1318 390 263 0 0 chr9 96133450 96133526 -27942646 + B1F SINE Alu 42 117 -32 4 1318 325 313 25 39 chr9 96134068 96134271 -27941901 + L1MC5 LINE L1 7714 7913 -48 4 1318 267 130 0 0 chr9 96134667 96134721 -27941451 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 4 1318 774 164 71 0 chr9 96134760 96134900 -27941272 - B1_Mur4 SINE Alu 0 150 1 4 1318 873 208 108 12 chr9 96134900 96135044 -27941128 - Lx9 LINE L1 -458 7186 7023 4 1318 504 0 0 0 chr9 96135044 96135100 -27941072 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1318 873 208 108 12 chr9 96135100 96135213 -27940959 - Lx9 LINE L1 -622 7022 6905 4 1318 339 250 103 65 chr9 96135213 96135320 -27940852 - RSINE1 SINE B4 -53 112 2 4 1318 223 231 0 71 chr9 96135362 96135418 -27940754 - PB1D10 SINE Alu -1 116 65 4 1318 10927 138 89 20 chr9 96135436 96137557 -27938615 - MERVL_2A-int LTR ERVL -3488 2273 5 4 1318 1206 277 12 93 chr9 96137557 96138055 -27938117 - MT2B LTR ERVL -6 595 167 4 1318 269 326 44 44 chr9 96138075 96138258 -27937914 - L1MEb LINE L1 -5605 465 283 4 1318 284 263 128 86 chr9 96138472 96138505 -27937667 + MT2A LTR ERVL 339 361 -172 4 1318 1626 189 50 191 chr9 96138505 96139101 -27937071 - RLTR18B LTR ERVK 0 512 1 4 1318 284 263 128 86 chr9 96139101 96139195 -27936977 + MT2A LTR ERVL 362 479 -54 4 1318 228 67 0 0 chr9 96139195 96139225 -27936947 + (CATA)n Simple_repeat Simple_repeat 2 31 0 4 1318 284 263 128 86 chr9 96139225 96139283 -27936889 + MT2A LTR ERVL 480 533 0 4 1318 1322 72 0 94 chr9 96139360 96139530 -27936642 - B2_Mm2 SINE B2 -2 193 33 4 1318 1195 62 0 0 chr9 96139530 96139676 -27936496 - B1_Mus2 SINE Alu 0 147 2 4 1318 1322 72 0 94 chr9 96139676 96139718 -27936454 - B2_Mm2 SINE B2 -163 32 1 4 1318 400 221 12 25 chr9 96139832 96139994 -27936178 + GA-rich Low_complexity Low_complexity 2 161 0 4 1318 250 289 89 75 chr9 96140194 96140340 -27935832 + RSINE1 SINE B4 2 149 -16 4 1318 396 0 0 0 chr9 96140341 96140385 -27935787 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1318 234 0 0 0 chr9 96140385 96140410 -27935762 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1318 714 237 112 5 chr9 96140435 96140622 -27935550 + B3 SINE B2 1 207 -9 4 1318 23 54 0 0 chr9 96140622 96140659 -27935513 + AT_rich Low_complexity Low_complexity 1 37 0 4 1318 478 101 0 0 chr9 96140666 96140735 -27935437 - MTC LTR MaLR -1 420 352 4 1318 1746 62 23 21 chr9 96140737 96141006 -27935166 + L1Md_F3 LINE L1 6328 6627 -9 4 1318 523 146 14 0 chr9 96141006 96141150 -27935022 + (TA)n Simple_repeat Simple_repeat 1 146 0 4 1318 25 0 0 0 chr9 96141150 96141175 -27934997 + AT_rich Low_complexity Low_complexity 1 25 0 4 1318 1587 147 160 0 chr9 96141175 96141488 -27934684 - MTC LTR MaLR -58 363 1 4 1318 336 250 55 7 chr9 96141488 96141633 -27934539 - MTC-int LTR MaLR 0 1258 1107 4 1318 3081 167 258 8 chr9 96141697 96142524 -27933648 + RMER1B Other Other 1 1033 -33 4 1318 360 0 0 0 chr9 96142524 96142564 -27933608 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1318 5045 177 50 55 chr9 96142580 96143702 -27932470 - MTC-int LTR MaLR -137 1121 6 4 1318 2469 161 24 2 chr9 96143705 96144117 -27932055 - MTC LTR MaLR 0 421 1 4 1318 321 234 26 13 chr9 96144152 96144230 -27931942 - PB1D10 SINE Alu -5 112 34 4 1318 208 243 96 35 chr9 96144503 96144618 -27931554 + L2b LINE L2 3179 3300 -75 4 1318 392 224 0 38 chr9 96145165 96145244 -27930928 - B4A SINE B4 -52 240 165 4 1318 484 282 8 17 chr9 96145352 96145471 -27930701 + PB1D7 SINE Alu 3 120 0 4 1318 505 250 33 16 chr9 96145623 96145745 -27930427 - B1_Mus2 SINE Alu -22 125 2 4 1318 474 269 83 8 chr9 96145849 96145969 -27930203 - ID_B1 SINE B4 -12 212 84 4 1318 322 328 8 17 chr9 96146476 96146594 -27929578 + PB1D10 SINE Alu 1 117 0 4 1318 882 237 34 10 chr9 96146830 96147039 -27929133 - B3 SINE B2 -1 215 2 4 1318 287 253 24 80 chr9 96147056 96147171 -27929001 - PB1D9 SINE Alu -28 121 14 4 1318 372 181 298 0 chr9 96147185 96147279 -27928893 - ID_B1 SINE B4 0 224 103 4 1318 757 246 45 29 chr9 96147344 96147587 -27928585 - L1M5 LINE L1 -401 5778 5532 4 1318 959 223 25 10 chr9 96147720 96147919 -27928253 + B3 SINE B2 4 205 -11 4 1318 405 244 22 11 chr9 96147980 96148071 -27928101 - RSINE1 SINE B4 -33 132 41 4 1318 757 294 47 5 chr9 96148102 96148314 -27927858 - ID_B1 SINE B4 -3 221 1 4 1318 227 213 49 0 chr9 96148353 96148414 -27927758 - L1M5 LINE L1 -879 5267 5204 4 1318 403 290 107 16 chr9 96148491 96148628 -27927544 + B1F SINE Alu 1 149 0 4 1318 255 318 52 7 chr9 96148651 96148806 -27927366 - L1M5 LINE L1 -1088 5058 4897 4 1318 391 252 117 0 chr9 96148869 96148972 -27927200 + PB1D7 SINE Alu 3 117 -3 4 1318 606 165 0 0 chr9 96148984 96149081 -27927091 + B1_Mur3 SINE Alu 40 136 -13 4 1318 324 0 0 0 chr9 96149081 96149117 -27927055 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1318 321 238 67 29 chr9 96149411 96149515 -27926657 - MLT1A1 LTR MaLR 0 408 301 4 1318 404 161 0 12 chr9 96149580 96149662 -27926510 + GA-rich Low_complexity Low_complexity 1 81 0 4 1318 286 273 154 16 chr9 96150002 96150125 -27926047 + RSINE1 SINE B4 2 141 -24 4 1318 408 125 0 0 chr9 96150165 96150229 -27925943 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1318 1146 36 7 0 chr9 96150248 96150385 -27925787 + B1_Mus2 SINE Alu 2 139 -8 4 1318 394 296 13 172 chr9 96150492 96150561 -27925611 + B3 SINE B2 84 132 -84 4 1318 1247 62 80 0 chr9 96150561 96150737 -27925435 - B2_Mm1t SINE B2 -2 191 2 4 1318 394 296 13 172 chr9 96150737 96150818 -27925354 + B3 SINE B2 133 210 -6 4 1318 276 257 40 0 chr9 96151494 96151568 -27924604 - RMER30 DNA MER1_type -23 179 103 5 1318 186 43 0 0 chr9 96151570 96151593 -27924579 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1318 564 242 25 2 chr9 96151607 96151733 -27924439 - ID_B1 SINE B4 -94 198 72 5 1318 7345 50 0 5 chr9 96151768 96152719 -27923453 - L1Md_F2 LINE L1 0 6582 5637 5 1318 325 267 27 0 chr9 96152719 96152794 -27923378 - RMER30 DNA MER1_type -124 78 2 5 1318 205 250 0 0 chr9 96153099 96153147 -27923025 + CT-rich Low_complexity Low_complexity 3 50 0 5 1318 231 170 0 0 chr9 96153367 96153414 -27922758 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1318 650 234 0 16 chr9 96153414 96153540 -27922632 - B1_Mur4 SINE Alu -1 149 26 5 1318 23 33 0 0 chr9 96153562 96153592 -27922580 + AT_rich Low_complexity Low_complexity 1 30 0 5 1318 288 296 40 30 chr9 96153701 96153802 -27922370 - PB1 SINE Alu -21 106 5 5 1318 347 169 53 66 chr9 96153897 96153973 -27922199 + MER3 DNA MER1_type 7 81 -128 5 1318 1274 147 60 200 chr9 96153983 96154382 -27921790 - ORR1B1 LTR MaLR -1 393 1 5 1318 873 255 16 5 chr9 96154426 96154619 -27921553 - B3 SINE B2 -11 205 11 5 1318 592 229 0 0 chr9 96154661 96154770 -27921402 - B1F SINE Alu -36 113 5 5 1318 624 269 14 0 chr9 96154803 96154944 -27921228 - ID_B1 SINE B4 0 224 82 5 1318 268 286 78 85 chr9 96155228 96155381 -27920791 - MTEb LTR MaLR -16 363 212 5 1318 255 192 0 0 chr9 96155490 96155563 -27920609 + (TTG)n Simple_repeat Simple_repeat 3 75 0 5 1318 2020 110 16 103 chr9 96155563 96156008 -27920164 + RMER17C LTR ERVK 1 406 -4 5 1318 413 19 19 0 chr9 96156008 96156062 -27920110 + (TAA)n Simple_repeat Simple_repeat 2 56 0 5 1318 486 49 0 0 chr9 96156063 96156124 -27920048 + (TTA)n Simple_repeat Simple_repeat 3 63 0 5 1318 805 136 88 0 chr9 96156124 96156249 -27919923 - B1_Mur2 SINE Alu -13 136 1 5 1318 892 158 22 0 chr9 96156411 96156550 -27919622 + B1_Mus1 SINE Alu 1 142 -6 5 1318 949 223 30 20 chr9 96156873 96157074 -27919098 - B3 SINE B2 -10 206 4 5 1318 756 188 0 22 chr9 96157298 96157434 -27918738 - B1_Mus1 SINE Alu -12 136 4 5 1318 383 325 46 31 chr9 96157323 96157453 -27918719 - B4 SINE B4 -88 204 73 5 1318 809 178 218 6 chr9 96157456 96157626 -27918546 - B3 SINE B2 -10 206 1 5 1318 694 240 25 98 chr9 96157636 96157830 -27918342 - B3A SINE B2 -10 185 1 5 1318 242 220 49 33 chr9 96158096 96158157 -27918015 - L2a LINE L2 -43 3383 3322 5 1318 308 274 63 0 chr9 96158187 96158282 -27917890 + PB1D7 SINE Alu 10 110 -10 5 1318 314 332 10 25 chr9 96158487 96158609 -27917563 + L2a LINE L2 3260 3421 -5 5 1318 24 0 0 0 chr9 96158647 96158671 -27917501 + AT_rich Low_complexity Low_complexity 1 24 0 5 1318 207 0 0 0 chr9 96159406 96159429 -27916743 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1318 378 227 88 16 chr9 96161607 96161724 -27914448 - PB1D9 SINE Alu -15 134 2 5 1318 338 260 72 10 chr9 96161724 96161801 -27914371 - B1F1 SINE Alu -66 83 1 5 1318 364 327 43 68 chr9 96161801 96161878 -27914294 - ID SINE ID -143 81 9 5 1318 1236 61 67 6 chr9 96161912 96162077 -27914095 + B2_Mm2 SINE B2 2 176 -19 5 1318 295 236 20 101 chr9 96162133 96162232 -27913940 - RSINE1 SINE B4 -61 104 14 5 1318 913 166 21 0 chr9 96162310 96162455 -27913717 - B1_Mur2 SINE Alu 0 149 2 5 1318 531 238 14 20 chr9 96162506 96162653 -27913519 - B3 SINE B2 -11 205 1 5 1318 262 280 53 0 chr9 96163187 96163262 -27912910 - ID_B1 SINE B4 -3 221 143 5 1318 410 308 37 43 chr9 96163483 96163646 -27912526 - RSINE1 SINE B4 0 165 4 5 1318 356 179 8 79 chr9 96163646 96163773 -27912399 + (TA)n Simple_repeat Simple_repeat 1 118 0 5 1318 617 306 76 5 chr9 96163822 96164006 -27912166 - ID_B1 SINE B4 -3 221 25 5 1318 246 193 140 0 chr9 96164011 96164068 -27912104 - B1F SINE Alu -1 148 84 5 1318 536 325 0 0 chr9 96164143 96164260 -27911912 - ID_B1 SINE B4 -27 197 81 5 1318 400 312 7 110 chr9 96164273 96164428 -27911744 - B1F1 SINE Alu -1 148 10 5 1318 237 128 0 0 chr9 96164837 96164884 -27911288 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1318 396 312 0 40 chr9 96164888 96164988 -27911184 - PB1D10 SINE Alu -15 102 7 5 1318 322 329 105 40 chr9 96164898 96165050 -27911122 - ID_B1 SINE B4 -51 173 12 5 1318 1102 124 10 56 chr9 96165205 96165217 -27910955 - B2_Mm2 SINE B2 -7 188 177 5 1318 243 0 0 0 chr9 96165217 96165244 -27910928 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5 1318 1129 54 7 39 chr9 96165252 96165405 -27910767 - B1_Mus1 SINE Alu 0 148 1 5 1318 1102 124 10 56 chr9 96165405 96165579 -27910593 - B2_Mm2 SINE B2 -27 168 3 5 1318 286 338 0 0 chr9 96165766 96165846 -27910326 - RMER15 LTR ERVL -90 485 406 5 1318 1405 85 18 11 chr9 96165891 96166127 -27910045 - B2_Mm1t SINE B2 0 216 2 5 1318 766 169 155 0 chr9 96166214 96166356 -27909816 - B2_Mm2 SINE B2 -31 164 1 5 1318 441 286 50 59 chr9 96166357 96166476 -27909696 - B1F SINE Alu -12 137 20 5 1318 342 0 0 0 chr9 96166631 96166669 -27909503 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 5 1318 889 122 71 7 chr9 96166669 96166809 -27909363 + B1_Mur2 SINE Alu 1 149 0 5 1318 226 318 135 11 chr9 96166960 96167049 -27909123 - PB1 SINE Alu -7 120 21 5 1318 556 269 69 21 chr9 96167153 96167297 -27908875 + RSINE1 SINE B4 1 151 -14 5 1318 444 19 0 0 chr9 96167297 96167350 -27908822 + (TATG)n Simple_repeat Simple_repeat 3 55 0 5 1318 198 337 129 0 chr9 96168048 96168149 -27908023 - MER5A DNA MER1_type -30 159 46 5 1318 287 271 20 0 chr9 96168753 96168835 -27907337 + B1F SINE Alu 2 85 -32 5 1318 482 248 40 60 chr9 96168851 96169001 -27907171 + B1F SINE Alu 1 147 -2 5 1318 1170 78 0 0 chr9 96169240 96169420 -27906752 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1318 231 61 0 0 chr9 96169564 96169597 -27906575 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 5 1318 302 296 213 0 chr9 96169599 96169707 -27906465 - B1F SINE Alu -17 132 2 5 1318 773 174 163 0 chr9 96170524 96170702 -27905470 - MTC LTR MaLR -213 208 2 5 1318 660 313 130 12 chr9 96170750 96171180 -27904992 - L2 LINE L2 -1101 2318 1838 5 1318 326 153 67 45 chr9 96171468 96171557 -27904615 - L2 LINE L2 -1606 1813 1723 5 1318 468 316 52 0 chr9 96171758 96171894 -27904278 - ID_B1 SINE B4 -2 222 80 5 1318 303 304 113 43 chr9 96171931 96172072 -27904100 + RSINE1 SINE B4 6 156 -9 5 1318 47 0 0 17 chr9 96172077 96172117 -27904055 + AT_rich Low_complexity Low_complexity 1 40 0 5 1318 1300 41 0 0 chr9 96172117 96172264 -27903908 + B1_Mus2 SINE Alu 1 147 0 5 1318 47 0 0 17 chr9 96172264 96172281 -27903891 + AT_rich Low_complexity Low_complexity 1 17 0 5 1318 366 80 0 0 chr9 96172281 96172331 -27903841 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1318 311 290 9 65 chr9 96172406 96172513 -27903659 - PB1D7 SINE Alu -5 115 15 5 1318 252 0 0 0 chr9 96172543 96172571 -27903601 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5 1318 750 176 72 0 chr9 96172571 96172696 -27903476 - B1_Mm SINE Alu -12 135 2 5 1318 210 143 0 0 chr9 96172808 96172843 -27903329 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1318 1233 35 21 0 chr9 96172871 96173016 -27903156 - B1_Mus1 SINE Alu 0 148 1 5 1318 459 279 0 0 chr9 96173670 96173756 -27902416 - RSINE1 SINE B4 -72 93 8 5 1318 909 176 14 0 chr9 96173966 96174108 -27902064 - B1_Mus2 SINE Alu -1 146 3 5 1318 405 0 0 0 chr9 96174166 96174211 -27901961 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1318 24 32 0 0 chr9 96174507 96174538 -27901634 + AT_rich Low_complexity Low_complexity 1 31 0 5 1318 491 246 44 0 chr9 96174809 96174923 -27901249 + B1F2 SINE Alu 18 136 -13 5 1318 870 186 0 21 chr9 96175158 96175301 -27900871 + B1_Mur3 SINE Alu 1 140 -9 5 1318 183 42 0 0 chr9 96175301 96175325 -27900847 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1318 319 289 13 0 chr9 96175335 96175411 -27900761 + PB1D7 SINE Alu 4 80 -40 5 1318 1004 199 61 5 chr9 96175439 96175636 -27900536 + B3 SINE B2 1 208 -8 5 1318 30 0 0 0 chr9 96175687 96175717 -27900455 + AT_rich Low_complexity Low_complexity 1 30 0 5 1318 593 262 37 75 chr9 96175718 96175879 -27900293 - RSINE1 SINE B4 0 165 11 5 1318 356 278 130 96 chr9 96176325 96176564 -27899608 + MLT-int LTR MaLR 861 1107 -628 5 1318 677 259 108 5 chr9 96176756 96176942 -27899230 - B3 SINE B2 -9 207 3 5 1318 205 100 0 70 chr9 96177163 96177182 -27898990 + A-rich Low_complexity Low_complexity 1 19 0 5 1318 398 133 333 0 chr9 96177182 96177272 -27898900 + PB1D9 SINE Alu 1 120 0 5 1318 205 100 0 70 chr9 96177272 96177295 -27898877 + A-rich Low_complexity Low_complexity 20 40 0 5 1318 863 245 43 14 chr9 96178221 96178428 -27897744 - B3 SINE B2 -3 213 1 5 1318 1507 82 0 16 chr9 96178619 96178806 -27897366 - B2_Mm2 SINE B2 -10 185 2 5 1318 305 296 24 12 chr9 96178971 96179053 -27897119 + MLT1A1 LTR MaLR 250 332 -76 5 1318 189 0 0 0 chr9 96179268 96179289 -27896883 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1318 999 109 43 0 chr9 96179393 96179531 -27896641 - B1_Mus1 SINE Alu 0 148 5 5 1318 239 205 35 93 chr9 96179789 96179875 -27896297 + MLT1A1 LTR MaLR 328 408 0 5 1318 408 233 0 0 chr9 96179913 96179986 -27896186 - PB1D10 SINE Alu -22 95 23 5 1318 947 223 15 20 chr9 96180064 96180261 -27895911 + B3 SINE B2 1 196 -20 6 1318 374 179 292 0 chr9 96180274 96180380 -27895792 - B1_Mur1 SINE Alu -12 137 1 6 1318 589 258 80 0 chr9 96180450 96180601 -27895571 - RSINE1 SINE B4 0 165 3 6 1318 269 309 15 0 chr9 96180627 96180695 -27895477 + ID4_ SINE ID 5 73 -10 6 1318 383 108 216 0 chr9 96180779 96180853 -27895319 - RLTR47_MM LTR ERV1 -91 441 352 6 1318 1257 79 84 6 chr9 96180863 96181042 -27895130 - B2_Mm2 SINE B2 -2 193 1 6 1318 324 162 15 0 chr9 96181109 96181177 -27894995 - Lx6 LINE L1 -1 7459 7391 6 1318 480 59 0 0 chr9 96181209 96181277 -27894895 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 6 1318 938 86 107 0 chr9 96181277 96181417 -27894755 - B2_Mm2 SINE B2 -38 157 3 6 1318 533 285 38 8 chr9 96181498 96181629 -27894543 + RSINE1 SINE B4 17 151 -14 6 1318 220 250 0 0 chr9 96181630 96181686 -27894486 + C-rich Low_complexity Low_complexity 1 56 0 6 1318 482 194 171 88 chr9 96181738 96181919 -27894253 - B3A SINE B2 0 198 3 6 1318 561 258 45 38 chr9 96182324 96182481 -27893691 - RSINE1 SINE B4 0 165 8 6 1318 33 25 0 0 chr9 96182491 96182531 -27893641 + AT_rich Low_complexity Low_complexity 1 40 0 6 1318 207 200 0 0 chr9 96182664 96182709 -27893463 + T-rich Low_complexity Low_complexity 3 47 0 6 1318 375 297 42 0 chr9 96182711 96182829 -27893343 - PB1 SINE Alu -4 123 1 6 1318 596 194 28 0 chr9 96182844 96182952 -27893220 - PB1D9 SINE Alu -8 112 2 6 1318 440 200 32 0 chr9 96183099 96183191 -27892981 + B1_Mur1 SINE Alu 27 126 -23 6 1318 467 119 24 0 chr9 96183195 96183279 -27892893 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 6 1318 1181 194 19 78 chr9 96183575 96183823 -27892349 - MYSERV-int LTR ERVK -922 5628 5395 6 1318 1311 27 7 0 chr9 96183823 96183969 -27892203 - B1_Mus2 SINE Alu 0 147 1 6 1318 1181 194 19 78 chr9 96183969 96184027 -27892145 - MYSERV-int LTR ERVK -1156 5394 5340 6 1318 347 242 77 49 chr9 96184027 96184159 -27892013 - RMER4B LTR ERVK -39 546 288 6 1318 899 238 32 5 chr9 96184162 96184381 -27891791 - MYSERV-int LTR ERVK -1423 5127 4917 6 1318 1410 262 139 91 chr9 96184417 96185435 -27890737 - MYSERV-int LTR ERVK -1914 4636 3775 6 1318 286 281 145 24 chr9 96186236 96186360 -27889812 - RMER5 LTR ERV1 -354 180 42 6 1318 1060 63 17 39 chr9 96186384 96186565 -27889607 + (TCCCC)n Simple_repeat Simple_repeat 4 180 0 6 1318 1419 97 11 0 chr9 96186567 96186752 -27889420 - B2_Mm1t SINE B2 -6 187 1 6 1318 433 276 0 20 chr9 96186951 96187051 -27889121 - PB1D9 SINE Alu -2 118 21 6 1318 393 359 55 33 chr9 96187079 96187353 -27888819 - B4A SINE B4 -12 280 1 6 1318 1050 174 44 69 chr9 96187617 96187821 -27888351 - B3 SINE B2 -17 199 1 6 1318 822 129 48 0 chr9 96187860 96187984 -27888188 - B1_Mur1 SINE Alu -2 147 18 6 1318 450 324 53 20 chr9 96188246 96188397 -27887775 - RSINE1 SINE B4 -6 159 4 6 1318 621 256 11 69 chr9 96188416 96188605 -27887567 - B3A SINE B2 -16 182 5 6 1318 1228 62 7 0 chr9 96188625 96188771 -27887401 - B1_Mus2 SINE Alu 0 147 1 6 1318 993 143 0 7 chr9 96188790 96188938 -27887234 - B1_Mus1 SINE Alu 0 148 2 6 1318 213 275 0 28 chr9 96188961 96189026 -27887146 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1318 659 348 42 21 chr9 96189026 96189311 -27886861 - B4A SINE B4 0 292 2 6 1318 543 288 16 0 chr9 96189457 96189582 -27886590 - B1F1 SINE Alu 0 149 23 6 1318 21 0 0 0 chr9 96189996 96190017 -27886155 + AT_rich Low_complexity Low_complexity 1 21 0 6 1318 306 242 0 142 chr9 96190158 96190264 -27885908 + PB1D10 SINE Alu 15 105 -12 6 1318 574 251 73 63 chr9 96190324 96190515 -27885657 + B3A SINE B2 6 198 0 6 1318 233 253 32 65 chr9 96191757 96191776 -27884396 + B1F SINE Alu 60 148 0 6 1318 240 221 14 68 chr9 96191776 96191849 -27884323 + ID_B1 SINE B4 156 224 0 6 1318 434 323 91 28 chr9 96191879 96192166 -27884006 + L1M5 LINE L1 5366 5670 -503 6 1318 420 20 0 0 chr9 96192213 96192262 -27883910 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1318 553 221 31 39 chr9 96192272 96192399 -27883773 - B3A SINE B2 -65 133 8 6 1318 306 98 0 0 chr9 96192471 96192522 -27883650 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1318 215 229 0 0 chr9 96192544 96192579 -27883593 - B1F1 SINE Alu -102 47 13 6 1318 462 221 32 103 chr9 96192579 96192601 -27883571 - B3A SINE B2 -6 192 175 6 1318 189 0 0 0 chr9 96192601 96192622 -27883550 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1318 462 221 32 103 chr9 96192622 96192755 -27883417 - B3A SINE B2 -24 174 48 6 1318 258 32 0 0 chr9 96192782 96192813 -27883359 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 6 1318 547 299 43 25 chr9 96192814 96192975 -27883197 - RSINE1 SINE B4 0 165 2 6 1318 1895 232 46 2 chr9 96193342 96193779 -27882393 - MT2A LTR ERVL 0 533 78 6 1318 805 139 14 68 chr9 96193792 96193939 -27882233 + B1_Mur4 SINE Alu 12 150 0 6 1318 560 243 0 9 chr9 96193962 96194074 -27882098 + B1_Mur1 SINE Alu 38 148 -1 6 1318 306 122 20 0 chr9 96194087 96194136 -27882036 - MT2A LTR ERVL -468 65 16 6 1318 483 18 0 0 chr9 96194664 96194720 -27881452 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1318 192 338 29 0 chr9 96195111 96195179 -27880993 + L2a LINE L2 3357 3426 0 6 1318 307 217 10 135 chr9 96195678 96195774 -27880398 - RSINE1 SINE B4 0 165 82 6 1318 1080 149 0 0 chr9 96195852 96196000 -27880172 - B1_Mus1 SINE Alu 0 148 1 6 1318 21 0 0 0 chr9 96196005 96196026 -27880146 + AT_rich Low_complexity Low_complexity 1 21 0 6 1318 297 256 28 8 chr9 96196046 96196117 -27880055 + B1F SINE Alu 34 131 -18 6 1318 892 101 23 0 chr9 96196431 96196560 -27879612 + B2_Mm2 SINE B2 2 133 -62 6 1318 692 205 9 11 chr9 96196556 96196701 -27879471 - B1_Mur1 SINE Alu -1 148 6 6 1318 593 280 142 5 chr9 96196744 96196934 -27879238 - B4A SINE B4 -76 216 1 6 1318 1411 41 103 23 chr9 96196967 96197142 -27879030 + B2_Mm1t SINE B2 1 189 -4 6 1318 1651 47 16 0 chr9 96197227 96197418 -27878754 - B2_Mm2 SINE B2 -1 194 1 6 1318 330 261 14 0 chr9 96197606 96197675 -27878497 + ID4 SINE ID 4 73 -10 6 1318 312 386 13 19 chr9 96197715 96197871 -27878301 + RSINE1 SINE B4 1 155 -10 6 1318 395 250 136 8 chr9 96198417 96198542 -27877630 + ID_B1 SINE B4 76 216 -8 6 1318 905 76 8 0 chr9 96198618 96198737 -27877435 - B2_Mm2 SINE B2 -74 121 2 6 1318 1168 82 0 7 chr9 96198811 96198959 -27877213 - B1_Mus1 SINE Alu 0 148 2 6 1318 417 293 5 0 chr9 96199980 96200090 -27876082 + PB1D10 SINE Alu 2 114 -6 6 1318 344 155 69 14 chr9 96200412 96200484 -27875688 + PB1D7 SINE Alu 43 118 -2 6 1318 1092 211 57 33 chr9 96200526 96200737 -27875435 + B3 SINE B2 1 216 0 6 1318 297 0 0 0 chr9 96202940 96202973 -27873199 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1318 422 204 97 0 chr9 96202976 96203069 -27873103 - B1_Mm SINE Alu -13 134 33 6 1318 722 204 175 60 chr9 96203819 96204002 -27872170 + ID_B1 SINE B4 19 222 -2 6 1318 534 237 177 36 chr9 96204501 96204763 -27871409 + MTE2a LTR MaLR 65 419 -2 6 1318 414 195 103 0 chr9 96204765 96204852 -27871320 - MTE2b LTR MaLR -271 108 13 6 1318 394 250 12 0 chr9 96205100 96205180 -27870992 + ID4_ SINE ID 3 83 0 6 1318 347 184 25 42 chr9 96205445 96205564 -27870608 - RCHARR1 DNA MER1_type -119 855 739 6 1318 392 313 15 44 chr9 96205568 96205705 -27870467 + RSINE1 SINE B4 2 134 -31 6 1318 2138 185 69 29 chr9 96205766 96206002 -27870170 - RCHARR1 DNA MER1_type -246 728 497 6 1318 794 213 0 14 chr9 96206002 96206145 -27870027 - B1_Mur2 SINE Alu -8 141 1 6 1318 2138 185 69 29 chr9 96206145 96206430 -27869742 - RCHARR1 DNA MER1_type -478 496 186 6 164 942 138 0 70 chr9 96206844 96207000 -27869172 + B1_Mm SINE Alu 2 146 -1 6 1319 1085 94 0 13 chr9 96207765 96207916 -27868256 + B1_Mur4 SINE Alu 2 150 0 6 1319 646 229 73 93 chr9 96208056 96208302 -27867870 + B4A SINE B4 3 243 -49 6 1319 189 0 0 0 chr9 96208669 96208690 -27867482 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1319 990 127 5 8 chr9 96208693 96208847 -27867325 + B2_Mm2 SINE B2 2 167 -31 6 1319 180 0 0 0 chr9 96208847 96208867 -27867305 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 1319 605 274 82 22 chr9 96208867 96208895 -27867277 + B3A SINE B2 168 195 -3 6 1319 29 0 0 0 chr9 96209290 96209319 -27866853 + AT_rich Low_complexity Low_complexity 1 29 0 6 1319 219 234 0 21 chr9 96209808 96209856 -27866316 - RSINE1 SINE B4 -63 102 56 6 1319 227 191 0 0 chr9 96209973 96210015 -27866157 - PB1D7 SINE Alu 0 120 79 6 1319 256 273 182 0 chr9 96210162 96210250 -27865922 + PB1 SINE Alu 21 124 -3 6 1319 555 90 0 0 chr9 96210787 96210865 -27865307 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1319 460 216 193 53 chr9 96211461 96211569 -27864603 - L1M4 LINE L1 -385 5799 5690 6 1319 1335 110 11 6 chr9 96211569 96211752 -27864420 + B2_Mm1t SINE B2 2 185 -8 6 1319 460 216 193 53 chr9 96211752 96211887 -27864285 - L1M4 LINE L1 -495 5689 5522 6 1319 572 0 15 0 chr9 96212182 96212250 -27863922 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 6 1319 7948 113 6 11 chr9 96212251 96214220 -27861952 - Lx LINE L1 -16 6638 4680 6 1319 341 287 117 0 chr9 96214220 96214314 -27861858 - PB1 SINE Alu -16 111 7 6 1319 908 27 0 0 chr9 96214358 96214470 -27861702 + B1_Mm SINE Alu 34 145 -2 6 1319 337 247 106 110 chr9 96215375 96215657 -27860515 + B4 SINE B4 1 281 -11 6 1319 501 152 0 0 chr9 96215671 96215776 -27860396 + (CA)n Simple_repeat Simple_repeat 2 106 0 6 1319 461 295 81 0 chr9 96215784 96215933 -27860239 + RSINE1 SINE B4 3 163 -2 6 1319 1033 138 7 0 chr9 96216060 96216205 -27859967 - B1_Mus2 SINE Alu 0 147 2 7 1319 802 167 7 65 chr9 96216283 96216437 -27859735 + B2_Mm1t SINE B2 48 192 -1 7 1319 1237 181 9 32 chr9 96216638 96216855 -27859317 + B3 SINE B2 5 216 0 7 1319 424 268 45 108 chr9 96217003 96217179 -27858993 + B4A SINE B4 56 220 -72 7 1319 233 302 310 0 chr9 96217437 96217553 -27858619 + B3A SINE B2 4 155 -43 7 1319 535 236 9 19 chr9 96220327 96220435 -27855737 + ID_B1 SINE B4 104 210 -14 7 1319 293 250 148 0 chr9 96220529 96220617 -27855555 + PB1D7 SINE Alu 1 101 -19 7 1319 276 130 0 0 chr9 96221530 96221576 -27854596 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 7 1319 25 0 0 0 chr9 96224041 96224066 -27852106 + AT_rich Low_complexity Low_complexity 1 25 0 7 1319 322 291 38 28 chr9 96224150 96224256 -27851916 + LTR16A LTR ERVL 196 302 -149 7 1319 1458 28 50 6 chr9 96224407 96224588 -27851584 + B2_Mm1a SINE B2 2 190 -3 7 1319 626 225 116 0 chr9 96224823 96224996 -27851176 + B3 SINE B2 1 193 -23 7 1319 702 250 165 0 chr9 96225633 96225821 -27850351 - ID_B1 SINE B4 -3 221 3 7 1319 233 177 12 37 chr9 96225872 96225954 -27850218 + CT-rich Low_complexity Low_complexity 2 81 0 7 1319 648 119 18 0 chr9 96225990 96226099 -27850073 + B1_Mur3 SINE Alu 38 148 -1 7 1319 342 272 12 0 chr9 96226105 96226186 -27849986 - MTD LTR MaLR -309 110 29 7 1319 1114 55 0 58 chr9 96226330 96226484 -27849688 - B1_Mus2 SINE Alu -2 145 1 7 1319 369 273 69 0 chr9 96226510 96226612 -27849560 + PB1D10 SINE Alu 1 114 -6 7 1319 244 246 33 0 chr9 96227757 96227818 -27848354 - ID4 SINE ID -9 74 12 7 1319 221 75 25 0 chr9 96227827 96227867 -27848305 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1319 337 297 27 55 chr9 96227880 96228026 -27848146 - RSINE1 SINE B4 -21 144 3 7 1319 297 195 69 58 chr9 96228033 96228120 -27848052 - B4A SINE B4 -123 169 82 7 1319 606 263 38 44 chr9 96228127 96228139 -27848033 - B3 SINE B2 0 216 208 7 1319 950 149 0 0 chr9 96228139 96228280 -27847892 - B1_Mus1 SINE Alu -7 141 1 7 1319 606 280 35 44 chr9 96228280 96228470 -27847702 - B3 SINE B2 -9 207 16 7 1319 350 202 90 0 chr9 96228459 96228548 -27847624 - B4A SINE B4 -195 97 1 7 1319 870 113 34 27 chr9 96228559 96228705 -27847467 - B1_Mus2 SINE Alu 0 147 1 7 1319 395 134 15 0 chr9 96229415 96229482 -27846690 + B1_Mur4 SINE Alu 3 70 -80 7 1319 606 126 0 0 chr9 96229670 96229773 -27846399 - B1_Mus2 SINE Alu -2 145 43 7 1319 226 280 93 0 chr9 96229944 96230019 -27846153 - MIRm SINE MIR -127 149 68 7 1319 262 216 106 64 chr9 96231158 96231252 -27844920 - B3 SINE B2 -53 163 66 7 1319 847 162 207 0 chr9 96231636 96231950 -27844222 + ORR1C2 LTR MaLR 1 378 -6 7 1319 1069 51 0 35 chr9 96232272 96232413 -27843759 + B1_Mus1 SINE Alu 1 136 -12 7 1319 198 0 0 0 chr9 96232413 96232435 -27843737 + (G)n Simple_repeat Simple_repeat 1 22 0 7 1319 1470 55 55 0 chr9 96232441 96232624 -27843548 + B2_Mm2 SINE B2 1 193 -2 7 1319 320 302 117 6 chr9 96232653 96232816 -27843356 + B3 SINE B2 1 181 -35 7 1319 234 0 0 0 chr9 96232821 96232847 -27843325 + (CAAAC)n Simple_repeat Simple_repeat 3 28 0 7 1319 450 0 0 0 chr9 96232869 96232919 -27843253 + (CATA)n Simple_repeat Simple_repeat 4 53 0 7 1319 251 314 19 38 chr9 96234187 96234293 -27841879 - PB1D10 SINE Alu 0 117 14 7 1319 228 258 61 0 chr9 96235147 96235213 -27840959 + L1MC4 LINE L1 7680 7749 -293 7 1319 216 219 0 0 chr9 96235468 96235509 -27840663 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1319 311 259 35 0 chr9 96236045 96236130 -27840042 - PB1D7 SINE Alu -10 110 23 7 1319 365 286 107 13 chr9 96237396 96237545 -27838627 + RSINE1 SINE B4 3 165 0 7 1319 1194 28 21 0 chr9 96237559 96237704 -27838468 + B1_Mus1 SINE Alu 1 148 0 7 1319 572 206 127 0 chr9 96237789 96237915 -27838257 - B1_Mur2 SINE Alu -7 142 1 7 1319 270 292 14 14 chr9 96237915 96237988 -27838184 - PB1D10 SINE Alu -11 106 34 7 1319 1497 69 16 0 chr9 96238341 96238529 -27837643 + B2_Mm2 SINE B2 2 192 -3 7 1319 270 238 143 0 chr9 96239327 96239411 -27836761 - PB1D10 SINE Alu -17 100 5 7 1319 303 225 113 30 chr9 96239625 96239758 -27836414 - RSINE1 SINE B4 -2 163 20 7 1319 577 129 69 10 chr9 96241656 96241758 -27834414 + B1_Mus1 SINE Alu 1 108 -40 7 1319 473 47 16 0 chr9 96242307 96242371 -27833801 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 1319 727 233 42 52 chr9 96242382 96242595 -27833577 - ID_B1 SINE B4 -6 218 8 7 1319 303 28 0 0 chr9 96243031 96243067 -27833105 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 7 1319 453 296 114 27 chr9 96244050 96244234 -27831938 - B4A SINE B4 -91 201 2 7 1319 338 288 178 0 chr9 96245121 96245284 -27830888 - MER20 DNA MER1_type -1 218 27 7 1319 253 224 14 56 chr9 96245548 96245619 -27830553 + ID4 SINE ID 3 70 -13 7 1319 1205 55 0 0 chr9 96246593 96246739 -27829433 - B1_Mus2 SINE Alu -1 146 1 7 1319 216 0 0 0 chr9 96247848 96247872 -27828300 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1319 356 234 12 38 chr9 96248305 96248385 -27827787 + ID4_ SINE ID 2 79 -4 7 1319 532 79 11 53 chr9 96248634 96248728 -27827444 - L1_Mus2 LINE L1 0 6566 6477 7 1319 213 266 94 21 chr9 96249063 96249159 -27827013 + PB1D10 SINE Alu 14 116 -1 7 1319 422 299 9 9 chr9 96249221 96249329 -27826843 + B3A SINE B2 1 108 -90 7 1319 259 298 55 47 chr9 96249375 96249502 -27826670 + B1F1 SINE Alu 3 130 -19 7 1319 281 280 64 11 chr9 96250063 96250157 -27826015 - RSINE1 SINE B4 -12 153 55 7 1319 555 88 0 0 chr9 96250433 96250524 -27825648 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 7 1319 304 212 30 0 chr9 96252153 96252219 -27823953 + tRNA-Ala-GCA tRNA tRNA 3 70 -5 7 1319 285 238 33 111 chr9 96252219 96252235 -27823937 + ID4_ SINE ID 25 83 0 7 1319 1232 104 12 0 chr9 96252272 96252445 -27823727 + B2_Mm1t SINE B2 2 176 -17 7 1319 962 77 6 90 chr9 96252448 96252604 -27823568 + B1_Mus1 SINE Alu 1 143 -5 7 1319 33 25 0 0 chr9 96252604 96252644 -27823528 + AT_rich Low_complexity Low_complexity 1 40 0 7 1319 237 130 35 53 chr9 96252664 96252714 -27823458 + B1_Mm SINE Alu 91 139 -8 7 1319 329 41 0 58 chr9 96252714 96252766 -27823406 + (CAAAC)n Simple_repeat Simple_repeat 2 50 0 7 1319 466 256 102 16 chr9 96252772 96252899 -27823273 + ID_B1 SINE B4 87 224 0 7 1319 438 277 93 14 chr9 96253111 96253250 -27822922 + RSINE1 SINE B4 3 152 -13 7 1319 521 232 88 62 chr9 96253376 96253569 -27822603 + B3A SINE B2 1 198 0 7 1319 617 232 38 102 chr9 96253648 96253883 -27822289 + ID_B1 SINE B4 3 222 -2 7 1319 308 299 0 0 chr9 96254078 96254145 -27822027 + ID4 SINE ID 6 72 -11 7 1319 213 341 12 12 chr9 96254145 96254161 -27822011 + B4 SINE B4 6 88 -204 7 1319 404 288 22 66 chr9 96254363 96254545 -27821627 + B4A SINE B4 106 279 -13 7 1319 405 290 35 65 chr9 96254548 96254746 -27821426 + B4 SINE B4 36 227 -65 7 1319 279 244 61 0 chr9 96254746 96254828 -27821344 + B4 SINE B4 1 87 -205 7 1319 1239 41 0 0 chr9 96254889 96255035 -27821137 + B1_Mm SINE Alu 2 147 0 7 1319 186 133 0 0 chr9 96255035 96255065 -27821107 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 7 1319 1717 21 0 0 chr9 96255620 96255812 -27820360 - B2_Mm1t SINE B2 0 193 2 7 1319 233 200 0 20 chr9 96255833 96255884 -27820288 - L1ME2z LINE L1 -517 5927 5878 7 1319 585 229 0 24 chr9 96255917 96256042 -27820130 - B1_Mur3 SINE Alu -9 140 19 7 1319 349 238 211 8 chr9 96256048 96256171 -27820001 - B1_Mur1 SINE Alu 0 149 2 7 1319 776 199 132 5 chr9 96256173 96256385 -27819787 - L1ME2z LINE L1 -591 5853 5615 7 1319 595 242 0 8 chr9 96256619 96256740 -27819432 - ID_B1 SINE B4 -20 204 85 7 1319 207 0 0 0 chr9 96258516 96258539 -27817633 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1319 240 300 99 11 chr9 96258650 96258741 -27817431 + B3A SINE B2 68 166 -32 7 1319 439 312 56 38 chr9 96258791 96258951 -27817221 + RSINE1 SINE B4 2 164 -1 7 1319 25 0 0 0 chr9 96258997 96259022 -27817150 + AT_rich Low_complexity Low_complexity 1 25 0 7 1319 330 269 59 0 chr9 96259494 96259597 -27816575 + B1F SINE Alu 1 117 -3 7 1319 287 282 104 82 chr9 96259590 96259725 -27816447 + RSINE1 SINE B4 28 165 0 7 1319 259 275 12 0 chr9 96259891 96259971 -27816201 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1319 474 239 32 121 chr9 96260110 96260267 -27815905 - B1F2 SINE Alu 0 149 7 7 1319 369 253 33 0 chr9 96261272 96261363 -27814809 + PB1D10 SINE Alu 1 94 -23 7 1319 219 69 0 0 chr9 96263996 96264025 -27812147 + (GGA)n Simple_repeat Simple_repeat 2 30 0 7 1319 29 28 0 0 chr9 96264424 96264460 -27811712 + GC_rich Low_complexity Low_complexity 1 36 0 7 1319 30 27 0 0 chr9 96264734 96264771 -27811401 + GC_rich Low_complexity Low_complexity 1 37 0 7 1319 22 88 0 0 chr9 96264801 96264858 -27811314 + GC_rich Low_complexity Low_complexity 1 57 0 7 1319 439 252 148 8 chr9 96265858 96265986 -27810186 - B1F1 SINE Alu 0 149 4 7 1319 672 134 29 36 chr9 96266119 96266258 -27809914 - B1_Mur4 SINE Alu -1 149 12 7 1319 841 178 97 0 chr9 96267095 96267280 -27808892 - B3 SINE B2 -4 212 10 8 1319 261 224 0 0 chr9 96267326 96267384 -27808788 - MER53 DNA hAT -135 58 1 8 1319 243 284 68 0 chr9 96267852 96267865 -27808307 + B1F1 SINE Alu 1 94 -55 8 1319 245 208 80 40 chr9 96267865 96267940 -27808232 + ID_B1 SINE B4 95 172 -52 8 1319 1633 26 16 0 chr9 96268056 96268246 -27807926 - B2_Mm1a SINE B2 0 193 1 8 1319 540 240 24 16 chr9 96268375 96268502 -27807670 + B1F SINE Alu 21 148 -1 8 1319 414 302 39 8 chr9 96268530 96268576 -27807596 + B1F SINE Alu 1 51 -98 8 1319 1268 179 159 59 chr9 96268576 96268915 -27807257 - ORR1D1 LTR MaLR -1 373 1 8 1319 414 302 39 8 chr9 96268915 96268995 -27807177 + B1F SINE Alu 52 131 -18 8 1319 279 167 123 14 chr9 96268961 96269034 -27807138 + B1_Mur2 SINE Alu 69 149 0 8 1319 270 345 51 17 chr9 96269078 96269196 -27806976 + RSINE1 SINE B4 14 135 -30 8 1319 1217 149 10 0 chr9 96269609 96269817 -27806355 - URR1A DNA MER1_type 0 226 17 8 1319 1555 288 143 16 chr9 96269819 96270450 -27805722 + Lx8 LINE L1 6761 7471 -2 8 1319 205 308 0 0 chr9 96270572 96270624 -27805548 + G-rich Low_complexity Low_complexity 6 57 0 8 1319 242 247 0 58 chr9 96270814 96270900 -27805272 + MLT1A1 LTR MaLR 323 403 -5 8 1319 669 240 7 7 chr9 96270956 96271103 -27805069 + B1F2 SINE Alu 2 148 -1 8 1319 255 280 53 11 chr9 96271400 96271494 -27804678 + PB1D10 SINE Alu 1 98 -51 8 1319 629 252 75 0 chr9 96271925 96272072 -27804100 + ID_B1 SINE B4 1 158 -66 8 1319 277 359 17 8 chr9 96272121 96272239 -27803933 + PB1D7 SINE Alu 2 120 0 8 1319 1088 77 7 0 chr9 96272481 96272624 -27803548 + B1_Mus2 SINE Alu 2 145 -2 8 1319 32 0 0 0 chr9 96272666 96272698 -27803474 + AT_rich Low_complexity Low_complexity 1 32 0 8 1319 928 160 0 32 chr9 96272701 96272856 -27803316 + B1_Mur4 SINE Alu 1 150 0 8 1319 1645 26 0 25 chr9 96272868 96273064 -27803108 + B2_Mm1a SINE B2 2 192 -1 8 1319 6704 46 1 2 chr9 96273064 96273874 -27802298 + L1Md_F2 LINE L1 5768 6576 -6 8 1319 23 0 0 0 chr9 96273882 96273905 -27802267 + AT_rich Low_complexity Low_complexity 1 23 0 8 1319 974 48 0 0 chr9 96273951 96274077 -27802095 - B1_Mus1 SINE Alu -12 136 11 8 1319 245 202 157 58 chr9 96274084 96274205 -27801967 + HAL1 LINE L1 1256 1388 -1119 8 1319 897 42 0 0 chr9 96274238 96274356 -27801816 + B1_Mus1 SINE Alu 26 143 -5 8 1319 2251 97 3 0 chr9 96274397 96274718 -27801454 - ORR1A2 LTR MaLR 0 327 6 8 1319 594 232 28 42 chr9 96274686 96274830 -27801342 - RSINE1 SINE B4 -21 144 3 8 1319 549 234 39 0 chr9 96274879 96275007 -27801165 + B3A SINE B2 13 145 -53 8 1319 360 0 0 0 chr9 96275047 96275087 -27801085 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1319 528 122 0 0 chr9 96275122 96275204 -27800968 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 8 1319 1221 106 0 0 chr9 96275205 96275385 -27800787 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 1319 554 246 113 36 chr9 96275401 96275504 -27800668 + B3 SINE B2 8 116 -100 8 1319 3407 33 8 2 chr9 96275504 96275898 -27800274 + MTA_Mm LTR MaLR 1 396 0 8 1319 554 246 113 36 chr9 96275898 96275988 -27800184 + B3 SINE B2 117 216 0 8 1319 994 247 98 27 chr9 96276022 96276317 -27799855 - Lx8 LINE L1 -707 6766 6451 8 1319 676 153 177 0 chr9 96276631 96276755 -27799417 - B1_Mus1 SINE Alu -1 147 2 8 1319 2235 97 12 48 chr9 96277033 96277368 -27798804 + ORR1A2 LTR MaLR 1 323 -4 8 1319 1454 253 80 34 chr9 96277412 96277520 -27798652 + Lx8 LINE L1 6240 6350 -1123 8 1319 2357 147 5 55 chr9 96277520 96277917 -27798255 + ORR1C1 LTR MaLR 2 378 0 8 1319 1479 253 80 34 chr9 96277917 96278246 -27797926 + Lx8 LINE L1 6351 6697 -776 8 1319 420 82 0 0 chr9 96278288 96278349 -27797823 + (TATG)n Simple_repeat Simple_repeat 1 61 0 8 1319 948 121 0 0 chr9 96278355 96278495 -27797677 - B2_Mm2 SINE B2 -55 140 1 8 1319 709 203 83 0 chr9 96278586 96278719 -27797453 - Lx8 LINE L1 -977 6496 6353 8 1319 1472 229 73 15 chr9 96278761 96279089 -27797083 - ORR1D2 LTR MaLR -19 351 5 8 1319 1001 275 94 49 chr9 96279093 96279498 -27796674 + Lx8 LINE L1 6801 7223 -250 8 1319 240 35 0 0 chr9 96279592 96279621 -27796551 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1319 1018 118 6 11 chr9 96279707 96279887 -27796285 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 8 1319 280 281 61 61 chr9 96279893 96280041 -27796131 - MLT1K LTR MaLR -27 568 421 8 1319 555 66 0 0 chr9 96280384 96280460 -27795712 + (CA)n Simple_repeat Simple_repeat 1 76 0 8 1319 291 149 40 0 chr9 96280461 96280535 -27795637 + GA-rich Low_complexity Low_complexity 1 77 0 8 1319 236 290 14 14 chr9 96280635 96280705 -27795467 - ID4 SINE ID -13 70 1 8 1319 1222 43 0 0 chr9 96280760 96280900 -27795272 + B1_Mus1 SINE Alu 2 141 -7 8 1319 234 0 0 0 chr9 96280906 96280932 -27795240 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1319 1278 148 9 39 chr9 96281109 96281341 -27794831 - URR1B DNA MER1_type 0 225 1 8 1319 312 312 13 0 chr9 96281386 96281463 -27794709 + ID4_ SINE ID 6 83 0 8 1319 272 270 7 131 chr9 96281700 96281845 -27794327 + MT2B LTR ERVL 156 282 -319 8 1319 599 232 14 21 chr9 96281719 96281860 -27794312 + B1_Mur2 SINE Alu 9 148 -1 8 1319 211 93 23 23 chr9 96282462 96282506 -27793666 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1319 771 256 17 6 chr9 96282507 96282680 -27793492 - B4 SINE B4 -23 269 95 8 1319 212 268 0 18 chr9 96282756 96282813 -27793359 + GA-rich Low_complexity Low_complexity 1 56 0 8 1319 326 339 15 8 chr9 96282898 96283029 -27793143 - B4 SINE B4 -122 170 39 8 1319 249 109 0 0 chr9 96283029 96283075 -27793097 + (A)n Simple_repeat Simple_repeat 1 46 0 8 1319 959 228 14 10 chr9 96283111 96283319 -27792853 - B3 SINE B2 -7 209 1 8 1319 523 257 53 7 chr9 96283817 96283984 -27792188 - ID_B1 SINE B4 -35 257 85 8 1319 1001 295 58 12 chr9 96284528 96284874 -27791298 + MTE2b LTR MaLR 3 364 -15 8 1319 403 269 47 54 chr9 96284884 96285010 -27791162 + MTE2b-int LTR MaLR 3 127 -1453 8 1319 1415 45 22 0 chr9 96285010 96285189 -27790983 + B2_Mm2 SINE B2 2 184 -11 8 1319 710 262 0 72 chr9 96285174 96285367 -27790805 + MTE2b-int LTR MaLR 113 291 -1289 8 1319 644 142 17 26 chr9 96285390 96285506 -27790666 + PB1D9 SINE Alu 1 115 -5 8 1319 402 281 32 24 chr9 96285517 96285641 -27790531 + MTE2b-int LTR MaLR 288 412 -1168 8 1319 346 314 95 33 chr9 96285700 96285911 -27790261 + MTE2b-int LTR MaLR 574 797 -783 8 1319 440 286 15 31 chr9 96286045 96286175 -27789997 - ID_B1 SINE B4 -11 213 86 8 1319 369 340 155 13 chr9 96286406 96286710 -27789462 - L1MC LINE L1 -2879 3267 2921 8 1319 532 225 78 0 chr9 96286936 96287065 -27789107 + B1_Mus2 SINE Alu 1 139 -8 8 1319 24 32 0 0 chr9 96287073 96287104 -27789068 + AT_rich Low_complexity Low_complexity 1 31 0 8 1319 430 290 73 28 chr9 96287104 96287312 -27788860 - B4A SINE B4 -74 218 5 8 1319 468 252 142 0 chr9 96287452 96287579 -27788593 + RSINE1 SINE B4 3 147 -18 8 1319 226 223 63 20 chr9 96287785 96287858 -27788314 - B1F SINE Alu -7 110 41 8 1319 1045 192 14 33 chr9 96287897 96288112 -27788060 + B3 SINE B2 5 215 -1 8 1319 25 65 0 0 chr9 96288222 96288268 -27787904 + AT_rich Low_complexity Low_complexity 1 46 0 8 1319 1381 63 35 0 chr9 96288268 96288442 -27787730 - B2_Mm2 SINE B2 -14 181 2 8 1319 624 176 176 0 chr9 96288485 96288610 -27787562 - B1_Mur1 SINE Alu -2 147 1 8 1319 1225 61 0 0 chr9 96288648 96288795 -27787377 + B1_Mm SINE Alu 1 147 0 8 1319 213 39 0 0 chr9 96288795 96288821 -27787351 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1319 1018 218 69 0 chr9 96288835 96289037 -27787135 - B3 SINE B2 0 216 1 8 1319 277 152 65 0 chr9 96289152 96289198 -27786974 - B1_Mur2 SINE Alu -18 131 83 8 1319 426 164 30 0 chr9 96289195 96289262 -27786910 + B1_Mur2 SINE Alu 31 99 -50 8 1319 622 289 13 0 chr9 96289576 96289725 -27786447 + ID_B1 SINE B4 73 223 -1 8 1319 557 264 145 0 chr9 96289730 96289923 -27786249 + ID_B1 SINE B4 3 223 -1 8 1319 416 226 60 68 chr9 96289939 96290072 -27786100 + B3 SINE B2 2 133 -83 8 1319 225 267 31 82 chr9 96290261 96290359 -27785813 + PB1D10 SINE Alu 11 103 -14 8 1319 291 186 102 2 chr9 96290362 96290431 -27785741 + ID4_ SINE ID 21 94 -58 8 1319 421 248 38 102 chr9 96290613 96290649 -27785523 - B1F1 SINE Alu 0 149 113 8 1319 1259 227 73 34 chr9 96290649 96291005 -27785167 + ORR1D2 LTR MaLR 1 370 0 8 1319 421 248 38 102 chr9 96291005 96291125 -27785047 - B1F1 SINE Alu -37 112 3 8 1319 936 163 7 0 chr9 96291214 96291361 -27784811 + B1_Mur4 SINE Alu 2 149 -1 8 1319 1411 71 38 0 chr9 96291364 96291547 -27784625 + B2_Mm2 SINE B2 2 191 -4 8 1319 1136 71 0 0 chr9 96291547 96291687 -27784485 + B1_Mus1 SINE Alu 3 142 -6 8 1319 761 0 11 0 chr9 96291690 96291779 -27784393 + (GAA)n Simple_repeat Simple_repeat 1 90 0 8 1319 257 99 56 14 chr9 96291973 96292045 -27784127 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 8 1319 222 246 116 0 chr9 96292049 96292118 -27784054 - ID_B1 SINE B4 -48 176 100 8 1319 301 195 36 44 chr9 96292138 96292239 -27783933 - PB1D7 SINE Alu -1 119 23 8 1319 1586 260 94 64 chr9 96293009 96293038 -27783134 - Lx8 LINE L1 -2 7471 7445 8 1319 1111 130 5 21 chr9 96293038 96293227 -27782945 - B2_Mm2 SINE B2 -9 186 1 8 1319 1706 273 135 45 chr9 96293227 96294559 -27781613 - Lx8 LINE L1 -29 7444 6003 8 1319 718 192 23 0 chr9 96294608 96294738 -27781434 - RSINE1 SINE B4 -25 140 8 8 1319 21 0 0 0 chr9 96294863 96294884 -27781288 + AT_rich Low_complexity Low_complexity 1 21 0 8 1319 506 139 0 0 chr9 96294918 96294997 -27781175 - B3 SINE B2 -137 79 1 9 1319 544 194 0 20 chr9 96295003 96295103 -27781069 - PB1D10 SINE Alu -18 99 2 9 1319 213 321 0 0 chr9 96295116 96295172 -27781000 - ID4_ SINE ID 0 83 28 9 1319 465 19 0 0 chr9 96295550 96295604 -27780568 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1319 546 205 49 8 chr9 96296004 96296127 -27780045 + ID_B1 SINE B4 87 214 -10 9 1319 775 50 10 0 chr9 96296127 96296227 -27779945 + B2_Mm2 SINE B2 2 102 -93 9 1319 330 26 0 0 chr9 96296348 96296387 -27779785 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1319 473 224 31 0 chr9 96296409 96296507 -27779665 - RSINE1 SINE B4 -63 102 2 9 1319 255 358 95 0 chr9 96296535 96296672 -27779500 - MIR SINE MIR -32 230 81 9 1319 292 282 14 0 chr9 96296787 96296858 -27779314 + ID4 SINE ID 1 72 -11 9 1319 378 0 0 0 chr9 96296858 96296900 -27779272 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1319 369 145 0 0 chr9 96296914 96296976 -27779196 + (GGGAGA)n Simple_repeat Simple_repeat 6 67 0 9 1319 249 163 41 0 chr9 96297207 96297256 -27778916 + MLT1J1 LTR MaLR 79 129 -315 9 1319 279 0 0 0 chr9 96298254 96298285 -27777887 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1319 1128 216 31 16 chr9 96298355 96298609 -27777563 - MTD LTR MaLR 0 419 162 9 1319 470 235 76 0 chr9 96299797 96299916 -27776256 - B1F SINE Alu -21 128 1 9 1319 189 155 22 67 chr9 96299925 96300015 -27776157 + CT-rich Low_complexity Low_complexity 2 87 0 9 1319 533 236 28 55 chr9 96300066 96300222 -27775950 - MTEa LTR MaLR 0 379 216 9 1319 191 36 0 35 chr9 96300348 96300377 -27775795 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1319 1268 102 11 0 chr9 96300379 96300555 -27775617 - B2_Mm1t SINE B2 -14 179 2 9 1319 1198 68 0 0 chr9 96300602 96300748 -27775424 - B1_Mus2 SINE Alu 0 147 2 9 1319 879 144 13 20 chr9 96300752 96300901 -27775271 - B1_Mur3 SINE Alu -1 148 1 9 1319 21 0 0 0 chr9 96300907 96300928 -27775244 + AT_rich Low_complexity Low_complexity 1 21 0 9 1319 402 74 0 0 chr9 96300954 96301008 -27775164 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 1319 202 111 21 43 chr9 96301073 96301120 -27775052 + (TA)n Simple_repeat Simple_repeat 2 47 0 9 1319 228 234 0 179 chr9 96301164 96301242 -27774930 - PB1 SINE Alu -31 96 33 9 1319 228 311 15 76 chr9 96301493 96301625 -27774547 + BC1_Mm scRNA scRNA 2 125 -27 9 1319 320 329 0 0 chr9 96301656 96301735 -27774437 + PB1 SINE Alu 11 89 -38 9 1319 26 0 0 0 chr9 96301737 96301763 -27774409 + AT_rich Low_complexity Low_complexity 1 26 0 9 1319 319 256 55 33 chr9 96301976 96302066 -27774106 + B4 SINE B4 222 288 -4 9 1319 1085 66 22 0 chr9 96302215 96302352 -27773820 - B1_Mus1 SINE Alu -8 140 1 9 1319 342 260 132 19 chr9 96302516 96302622 -27773550 + RSINE1 SINE B4 11 128 -37 9 1319 317 117 17 0 chr9 96302947 96303007 -27773165 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1319 1170 92 45 17 chr9 96303095 96303271 -27772901 + B2_Mm2 SINE B2 1 181 -14 9 1319 438 98 323 0 chr9 96303303 96303411 -27772761 + B2_Mm2 SINE B2 47 195 0 9 1319 420 111 0 0 chr9 96303412 96303475 -27772697 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 9 1319 487 240 0 10 chr9 96303475 96303572 -27772600 - PB1D10 SINE Alu -13 104 9 9 1319 234 250 0 91 chr9 96303519 96303573 -27772599 - B4A SINE B4 -147 145 95 9 1319 2358 220 38 70 chr9 96303573 96304204 -27771968 + RMER19C LTR ERVK 1 611 0 9 1319 234 250 0 91 chr9 96304204 96304215 -27771957 - B4A SINE B4 -198 94 86 9 1319 306 0 0 0 chr9 96304297 96304331 -27771841 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 1319 278 266 38 12 chr9 96304769 96304849 -27771323 - PB1D10 SINE Alu -25 92 11 9 1319 238 328 90 15 chr9 96304802 96304935 -27771237 - B4A SINE B4 -148 144 2 9 1319 292 241 56 33 chr9 96305238 96305328 -27770844 - MER57A-int LTR ERV1 -298 5889 5798 9 1319 697 156 129 16 chr9 96305534 96305658 -27770514 + B1_Mm SINE Alu 9 146 -1 9 1319 1114 14 0 21 chr9 96305830 96305972 -27770200 + (TTTCC)n Simple_repeat Simple_repeat 2 140 0 9 1319 189 0 0 0 chr9 96306234 96306255 -27769917 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9 1319 386 213 73 9 chr9 96307232 96307341 -27768831 + PB1D10 SINE Alu 2 117 0 9 1319 182 362 0 14 chr9 96307651 96307721 -27768451 + MIR3 SINE MIR 112 180 -28 9 1319 640 328 49 0 chr9 96307767 96307971 -27768201 + B4 SINE B4 20 233 -59 9 1319 1245 94 56 0 chr9 96308067 96308247 -27767925 + B2_Mm2 SINE B2 3 192 -3 9 1319 739 203 0 40 chr9 96308279 96308428 -27767744 + B1_Mus1 SINE Alu 5 147 -1 9 1319 238 138 17 17 chr9 96308430 96308464 -27767708 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1319 1110 82 0 13 chr9 96308464 96308613 -27767559 + B1_Mm SINE Alu 1 147 0 9 1319 238 138 17 17 chr9 96308613 96308637 -27767535 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 9 1319 740 247 90 0 chr9 96308646 96308824 -27767348 + B4 SINE B4 81 274 -18 9 1319 360 0 0 0 chr9 96308837 96308877 -27767295 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1319 226 178 22 0 chr9 96308913 96308958 -27767214 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 9 1319 1207 153 25 0 chr9 96309519 96309722 -27766450 + ORR1B1 LTR MaLR 1 208 -186 9 1319 360 322 37 63 chr9 96310030 96310219 -27765953 + RLTR23 LTR ERV1 247 430 0 9 1319 805 196 0 25 chr9 96310219 96310376 -27765796 + ORR1B1 LTR MaLR 201 353 -41 9 1319 628 20 192 0 chr9 96310376 96310475 -27765697 + L1Md_F2 LINE L1 6465 6582 0 9 1319 1180 48 0 13 chr9 96310488 96310637 -27765535 + B1_Mus2 SINE Alu 1 147 0 9 1319 334 127 0 127 chr9 96310654 96310717 -27765455 + ORR1B1 LTR MaLR 340 394 0 9 1319 261 277 10 78 chr9 96311090 96311192 -27764980 + ID_B1 SINE B4 62 156 -68 9 1319 422 199 123 14 chr9 96311123 96311252 -27764920 + PB1D7 SINE Alu 9 149 0 9 1319 568 208 29 112 chr9 96311336 96311542 -27764630 - B3A SINE B2 -9 189 1 9 1319 299 346 85 16 chr9 96311557 96311686 -27764486 - B1F1 SINE Alu -9 140 3 9 1319 381 318 0 43 chr9 96311702 96311817 -27764355 - PB1D10 SINE Alu 0 117 8 9 1319 252 277 15 0 chr9 96312162 96312227 -27763945 + ID_B1 SINE B4 36 101 -123 9 1319 273 272 105 32 chr9 96312340 96312435 -27763737 + RSINE1 SINE B4 21 122 -43 9 1319 243 0 0 0 chr9 96312450 96312477 -27763695 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1319 350 258 21 63 chr9 96312787 96312882 -27763290 - ID_B1 SINE B4 -27 197 107 9 1319 297 316 42 50 chr9 96312882 96312907 -27763265 - B1F2 SINE Alu -30 119 1 9 1319 1277 27 0 0 chr9 96313861 96314007 -27762165 + B1_Mus2 SINE Alu 2 147 0 9 1319 189 0 0 0 chr9 96314011 96314032 -27762140 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1319 342 115 0 0 chr9 96314147 96314199 -27761973 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1319 1076 330 39 64 chr9 96314213 96314731 -27761441 + Lx8 LINE L1 6820 7324 -149 9 1319 369 0 0 0 chr9 96314732 96314773 -27761399 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1319 220 27 26 26 chr9 96314937 96314975 -27761197 + (TTG)n Simple_repeat Simple_repeat 2 39 0 9 1319 330 298 50 42 chr9 96314988 96315107 -27761065 + PB1D9 SINE Alu 1 120 0 9 1319 451 315 97 14 chr9 96315111 96315256 -27760916 + ID_B1 SINE B4 1 157 -67 9 1319 467 298 63 7 chr9 96315287 96315429 -27760743 + ID_B1 SINE B4 57 206 -18 9 1319 274 280 68 29 chr9 96315554 96315657 -27760515 - ID_B1 SINE B4 -1 223 117 9 1319 240 328 86 0 chr9 96315631 96315747 -27760425 - B4 SINE B4 -152 140 15 9 1319 450 278 105 0 chr9 96316168 96316301 -27759871 + RSINE1 SINE B4 2 148 -17 9 1319 402 21 0 0 chr9 96316321 96316368 -27759804 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1319 292 282 55 92 chr9 96316455 96316619 -27759553 - MER53 DNA hAT -33 160 3 9 1319 295 324 99 28 chr9 96317098 96317279 -27758893 - LTR37A LTR ERV1 -15 411 218 9 1319 670 227 234 8 chr9 96317292 96317536 -27758636 + MLT1B LTR MaLR 8 306 -84 9 1319 255 79 0 0 chr9 96317611 96317649 -27758523 + (TC)n Simple_repeat Simple_repeat 1 38 0 9 1319 332 221 29 0 chr9 96317655 96317723 -27758449 - B2_Mm2 SINE B2 -120 75 6 9 1319 609 264 0 0 chr9 96317725 96317846 -27758326 - ID_B1 SINE B4 -2 222 102 9 1319 806 274 125 91 chr9 96317851 96318212 -27757960 + MTE2a LTR MaLR 6 378 -1 9 1319 250 32 0 0 chr9 96318241 96318272 -27757900 + MLT1B LTR MaLR 325 355 -35 9 1319 198 0 0 0 chr9 96318388 96318410 -27757762 + (TC)n Simple_repeat Simple_repeat 1 22 0 9 1319 273 229 62 62 chr9 96318411 96318476 -27757696 - ID4_ SINE ID -11 72 8 9 1319 464 313 126 6 chr9 96318506 96318673 -27757499 + MER58A DNA MER1_type 12 198 -26 9 1319 303 54 0 0 chr9 96318713 96318750 -27757422 - HAL1-3A_ME LINE L1 -847 2011 1975 9 1319 570 212 0 0 chr9 96318754 96318914 -27757258 + (TG)n Simple_repeat Simple_repeat 1 160 0 9 1319 318 156 0 179 chr9 96318914 96318992 -27757180 - B4A SINE B4 0 292 229 9 1319 725 145 59 30 chr9 96319021 96319156 -27757016 + B2_Mm2 SINE B2 2 140 -55 9 1319 576 274 86 77 chr9 96319139 96319360 -27756812 - B4A SINE B4 -68 224 2 9 1319 27 0 0 0 chr9 96319508 96319535 -27756637 + AT_rich Low_complexity Low_complexity 1 27 0 1 1319 2678 235 118 13 chr9 96320289 96320984 -27755188 + Lx8 LINE L1 6704 7471 -2 1 1319 504 254 108 7 chr9 96321039 96321178 -27754994 + RSINE1 SINE B4 8 160 -5 1 1319 22 56 0 0 chr9 96321179 96321215 -27754957 + AT_rich Low_complexity Low_complexity 1 36 0 1 1319 1712 152 81 51 chr9 96321228 96321434 -27754738 + RMER17C LTR ERVK 1 213 -197 1 1319 528 16 0 0 chr9 96321434 96321495 -27754677 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1319 1712 152 81 51 chr9 96321495 96321683 -27754489 + RMER17C LTR ERVK 214 407 -3 1 1319 876 198 61 0 chr9 96321758 96321955 -27754217 + B3 SINE B2 2 210 -6 1 1319 225 0 0 0 chr9 96321996 96322021 -27754151 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1319 549 267 50 0 chr9 96322039 96322159 -27754013 - RSINE1 SINE B4 -33 132 7 1 1319 233 57 0 28 chr9 96322163 96322199 -27753973 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1319 870 54 0 26 chr9 96322203 96322317 -27753855 - B1_Mus1 SINE Alu 0 148 38 1 1319 359 130 13 80 chr9 96322254 96322329 -27753843 - RLTR25B LTR ERVK -529 499 430 1 1319 507 246 0 129 chr9 96322362 96322525 -27753647 + B1_Mur2 SINE Alu 5 146 -3 1 1319 37 52 0 0 chr9 96322663 96322721 -27753451 + AT_rich Low_complexity Low_complexity 1 58 0 1 1319 1291 104 22 0 chr9 96322777 96322959 -27753213 - B2_Mm2 SINE B2 -8 187 2 1 1319 428 170 99 10 chr9 96323037 96323138 -27753034 - PB1D7 SINE Alu -2 118 9 1 1319 1936 198 34 13 chr9 96323140 96323519 -27752653 - MTD LTR MaLR -15 404 18 1 1319 227 303 0 15 chr9 96323551 96323618 -27752554 - tRNA-Ala-GCG tRNA tRNA -7 68 3 1 1319 681 265 50 71 chr9 96323713 96323993 -27752179 + B4A SINE B4 14 287 -5 1 1319 400 242 141 0 chr9 96324049 96324177 -27751995 + ID_B1 SINE B4 78 223 -1 1 1319 276 250 71 12 chr9 96324363 96324448 -27751724 + MTD LTR MaLR 35 124 -295 1 1319 624 167 0 125 chr9 96324519 96324663 -27751509 - B1_Mur4 SINE Alu -16 134 9 1 1319 490 267 33 56 chr9 96324675 96324899 -27751273 + MTD LTR MaLR 107 419 0 1 1319 214 205 0 0 chr9 96325534 96325573 -27750599 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1 1319 212 213 64 0 chr9 96325573 96325620 -27750552 - PB1D9 SINE Alu -1 119 70 1 1319 26 30 0 0 chr9 96325620 96325653 -27750519 + AT_rich Low_complexity Low_complexity 1 33 0 1 1319 1307 76 35 6 chr9 96325653 96325825 -27750347 + B2_Mm2 SINE B2 2 178 -17 1 1319 1377 77 0 11 chr9 96325826 96326010 -27750162 - B2_Mm2 SINE B2 -13 182 1 1 1319 567 301 26 26 chr9 96327213 96327404 -27748768 + B3A SINE B2 2 192 -6 1 1319 733 139 0 0 chr9 96327412 96327520 -27748652 - B1_Mur1 SINE Alu 0 149 42 1 1319 264 0 0 159 chr9 96327523 96327655 -27748517 + (CTCTG)n Simple_repeat Simple_repeat 5 115 0 1 1319 292 158 33 66 chr9 96327656 96327717 -27748455 - PB1D9 SINE Alu -61 59 1 1 1319 387 257 270 0 chr9 96327736 96327888 -27748284 + ID_B1 SINE B4 1 193 -31 1 1319 685 230 49 16 chr9 96327888 96328193 -27747979 + ORR1E LTR MaLR 1 370 0 1 1319 1307 85 11 0 chr9 96328232 96328408 -27747764 + B2_Mm1a SINE B2 1 178 -15 1 1319 369 0 0 0 chr9 96328410 96328451 -27747721 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1319 951 154 7 0 chr9 96328480 96328623 -27747549 + B1_Mur4 SINE Alu 7 150 0 1 1319 253 297 44 82 chr9 96328497 96328655 -27747517 - YREP_Mm Unknown Unknown -1518 294 143 1 1319 208 191 24 0 chr9 96328719 96328761 -27747411 + GA-rich Low_complexity Low_complexity 3 45 0 1 1319 1186 280 16 0 chr9 96329177 96329488 -27746684 + Lx8 LINE L1 7010 7325 -148 1 1319 1234 164 409 0 chr9 96329491 96329760 -27746412 + ORR1C2 LTR MaLR 2 380 -14 1 1319 180 0 0 0 chr9 96329760 96329780 -27746392 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1319 243 79 0 0 chr9 96329797 96329835 -27746337 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1319 324 276 47 84 chr9 96329847 96329954 -27746218 + MT2B LTR ERVL 155 257 -344 1 1319 674 219 16 0 chr9 96329871 96329999 -27746173 + B1_Mur1 SINE Alu 20 149 0 1 1319 290 354 56 84 chr9 96329954 96330024 -27746148 + B4 SINE B4 83 254 -38 1 1319 3405 144 81 2 chr9 96330024 96330749 -27745423 + Lx4B LINE L1 6197 7049 -1 1 1319 1082 84 14 0 chr9 96330862 96331004 -27745168 - B1_Mur4 SINE Alu 0 150 7 1 1319 561 289 199 0 chr9 96331047 96331203 -27744969 + ID_B1 SINE B4 32 218 -6 1 1319 595 184 47 16 chr9 96331204 96331331 -27744841 + B1_Mur1 SINE Alu 19 149 0 1 1319 421 253 12 0 chr9 96331419 96331502 -27744670 + BLACKJACK DNA AcHobo 3 86 -2858 1 1319 197 265 17 148 chr9 96331515 96331630 -27744542 + L2c LINE L2 3286 3385 -2 1 1319 223 363 95 6 chr9 96331660 96331818 -27744354 - L2c LINE L2 -11 3376 3205 1 1319 432 99 0 0 chr9 96331828 96331899 -27744273 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1319 2399 156 0 3 chr9 96332135 96332514 -27743658 - RLTR14 LTR ERV1 -4 378 1 1 1319 1322 94 5 25 chr9 96332570 96332766 -27743406 + B2_Mm1a SINE B2 2 193 0 1 1319 570 291 41 25 chr9 96333076 96333319 -27742853 + L1MB8 LINE L1 5846 6092 -86 1 1319 667 163 0 0 chr9 96333336 96333434 -27742738 + B3 SINE B2 1 98 -118 1 1319 1334 157 241 37 chr9 96333435 96333759 -27742413 + RMER10B LTR ERVL 5 394 -4 1 1319 278 165 12 25 chr9 96333759 96333778 -27742394 + T-rich Low_complexity Low_complexity 64 83 0 1 1319 1232 54 0 13 chr9 96333778 96333928 -27742244 - B1_Mus1 SINE Alu 0 148 1 1 1319 278 165 12 25 chr9 96333928 96333989 -27742183 + T-rich Low_complexity Low_complexity 5 63 0 1 1319 1293 27 0 0 chr9 96334534 96334680 -27741492 - B1_Mm SINE Alu 0 147 2 1 1319 865 172 14 0 chr9 96334871 96335016 -27741156 - B1_Mur4 SINE Alu -2 148 2 1 1319 479 211 11 0 chr9 96335051 96335141 -27741031 + PB1D9 SINE Alu 25 115 -5 1 1319 1281 62 73 0 chr9 96335150 96335329 -27740843 + B2_Mm1a SINE B2 2 193 0 1 1319 310 121 30 0 chr9 96335602 96335668 -27740504 + GA-rich Low_complexity Low_complexity 1 68 0 1 1319 252 221 44 0 chr9 96335821 96335889 -27740283 - L1MC5 LINE L1 -101 7860 7790 1 1319 238 200 0 0 chr9 96335960 96336000 -27740172 + ID4 SINE ID 10 49 -34 1 1319 305 355 36 61 chr9 96336045 96336210 -27739962 - MIR SINE MIR -17 245 85 1 1319 393 240 225 86 chr9 96336247 96336434 -27739738 - ID_B1 SINE B4 -2 222 10 1 1319 251 114 0 22 chr9 96336435 96336480 -27739692 + (TCC)n Simple_repeat Simple_repeat 2 45 0 1 1319 278 285 94 112 chr9 96336710 96336731 -27739441 - B4 SINE B4 -49 243 148 1 1319 750 193 7 7 chr9 96336731 96336867 -27739305 - B1_Mus2 SINE Alu -9 138 3 1 1319 317 286 52 73 chr9 96336867 96336902 -27739270 - MT2B LTR ERVL -444 157 126 1 1319 278 285 94 112 chr9 96336867 96336880 -27739292 - B4 SINE B4 -49 147 77 1 1319 568 219 109 0 chr9 96337044 96337163 -27739009 + ID_B1 SINE B4 93 224 0 1 1320 740 259 74 5 chr9 96339453 96339643 -27736529 - ID_B1 SINE B4 0 224 22 1 1320 442 219 24 0 chr9 96339664 96339746 -27736426 - PB1D10 SINE Alu -5 112 29 1 1320 995 122 7 20 chr9 96339827 96339978 -27736194 - B1_Mur3 SINE Alu 0 149 1 1 1320 396 0 0 0 chr9 96340600 96340644 -27735528 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1320 596 318 102 42 chr9 96340773 96341107 -27735065 + MER21B LTR ERV1 258 611 -252 1 1320 411 236 261 11 chr9 96341107 96341295 -27734877 + B4A SINE B4 2 236 -56 1 1320 222 175 38 0 chr9 96341348 96341428 -27734744 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1320 385 276 42 25 chr9 96341436 96341555 -27734617 + MER21B LTR ERV1 602 722 -141 1 1320 754 224 13 9 chr9 96341534 96341695 -27734477 + ID_B1 SINE B4 69 224 0 1 1320 271 288 148 67 chr9 96341921 96342070 -27734102 - MER20 DNA MER1_type -28 191 31 1 1320 21 0 0 0 chr9 96342738 96342759 -27733413 + GC_rich Low_complexity Low_complexity 1 21 0 1 1320 477 335 73 21 chr9 96342965 96343157 -27733015 + MER45C DNA Tip100 63 264 -689 1 1320 207 0 0 0 chr9 96343157 96343180 -27732992 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1320 277 354 10 48 chr9 96343215 96343319 -27732853 + MER45C DNA Tip100 706 805 -148 1 1320 225 94 0 0 chr9 96343454 96343486 -27732686 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1320 237 323 0 0 chr9 96343503 96343565 -27732607 + MER45C DNA Tip100 892 953 0 1 1320 538 343 91 19 chr9 96343633 96343662 -27732510 + LTR16A LTR ERVL 106 130 -321 1 1320 1025 203 52 0 chr9 96343662 96343854 -27732318 - B3 SINE B2 -11 205 4 1 1320 538 343 91 19 chr9 96343854 96344133 -27732039 + LTR16A LTR ERVL 131 436 -15 1 1320 364 264 74 19 chr9 96344186 96344281 -27731891 + PB1D10 SINE Alu 2 104 -13 1 1320 273 57 0 0 chr9 96344281 96344316 -27731856 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 1320 364 264 74 19 chr9 96344316 96344328 -27731844 + PB1D10 SINE Alu 105 115 -2 1 1320 2502 120 32 82 chr9 96344329 96344829 -27731343 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1320 377 191 9 35 chr9 96345062 96345154 -27731018 - PB1D10 SINE Alu -2 147 46 1 1320 261 250 44 0 chr9 96345347 96345415 -27730757 + ID2 SINE ID 2 72 -11 1 1320 540 174 11 0 chr9 96345462 96345554 -27730618 - ID_B1 SINE B4 -4 220 128 1 1320 318 279 125 0 chr9 96345463 96345567 -27730605 - B1_Mur1 SINE Alu -5 144 28 1 1320 1166 82 0 0 chr9 96345596 96345742 -27730430 + B1_Mus1 SINE Alu 3 148 0 1 1320 365 202 242 11 chr9 96346183 96346278 -27729894 + PB1D7 SINE Alu 3 119 -1 1 1320 1166 160 0 5 chr9 96346488 96346683 -27729489 - B2_Mm2 SINE B2 0 195 2 1 1320 687 178 40 43 chr9 96346690 96346880 -27729292 - B3 SINE B2 -6 189 7 1 1320 303 28 0 0 chr9 96346977 96347013 -27729159 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1320 357 210 312 8 chr9 96347487 96347612 -27728560 - RSINE1 SINE B4 0 165 3 1 1320 845 209 0 7 chr9 96347663 96347812 -27728360 + B1_Mur2 SINE Alu 1 148 -1 1 1320 1338 181 20 2 chr9 96347837 96348086 -27728086 - MTC LTR MaLR -8 413 129 1 1320 605 102 0 75 chr9 96348216 96348320 -27727852 + MTC LTR MaLR 1 96 -325 1 1320 1396 84 0 31 chr9 96348320 96348516 -27727656 + B2_Mm2 SINE B2 1 190 -5 1 1320 1910 148 57 10 chr9 96348516 96348830 -27727342 + MTC LTR MaLR 89 417 -4 1 1320 1703 210 76 7 chr9 96348885 96349251 -27726921 - MTD LTR MaLR -8 411 30 1 1320 1464 38 37 21 chr9 96349431 96349620 -27726552 - B2_Mm1a SINE B2 0 193 2 1 1320 201 147 0 0 chr9 96349824 96349858 -27726314 + (GAA)n Simple_repeat Simple_repeat 3 36 0 1 1320 365 294 113 39 chr9 96350030 96350260 -27725912 + L1M4 LINE L1 5555 5801 -373 1 1320 259 305 42 0 chr9 96350290 96350385 -27725787 + ORR1E LTR MaLR 2 100 -259 1 1320 477 131 33 46 chr9 96350540 96350692 -27725480 + CT-rich Low_complexity Low_complexity 4 153 0 1 1320 225 196 0 42 chr9 96352083 96352114 -27724058 + T-rich Low_complexity Low_complexity 16 46 0 1 1320 1183 88 0 0 chr9 96352114 96352262 -27723910 - B1_Mus1 SINE Alu 0 148 1 1 1320 225 196 0 42 chr9 96352262 96352278 -27723894 + T-rich Low_complexity Low_complexity 1 15 0 1 1320 938 157 7 13 chr9 96352291 96352440 -27723732 + B1_Mus1 SINE Alu 1 148 0 1 1320 558 167 0 0 chr9 96352471 96352603 -27723569 + (TG)n Simple_repeat Simple_repeat 2 133 0 1 1320 567 143 184 115 chr9 96352608 96352782 -27723390 - B3A SINE B2 -11 187 2 1 1320 268 246 46 0 chr9 96353044 96353109 -27723063 + RMER15 LTR ERVL 5 72 -503 1 1320 1471 192 21 155 chr9 96353171 96353603 -27722569 + RMER15 LTR ERVL 22 395 -180 1 1320 257 278 69 0 chr9 96353606 96353678 -27722494 - RSINE1 SINE B4 -4 161 85 1 1320 823 58 0 0 chr9 96353765 96353868 -27722304 - B2_Mm2 SINE B2 -92 103 1 1 1320 352 297 11 32 chr9 96353868 96353961 -27722211 - RSINE1 SINE B4 -72 93 3 1 1320 1603 27 0 11 chr9 96353978 96354166 -27722006 - B2_Mm1t SINE B2 -6 187 2 1 1320 776 308 154 26 chr9 96354257 96354679 -27721493 + MLT1C LTR MaLR 21 496 -9 1 1320 268 263 25 50 chr9 96355131 96355211 -27720961 + PB1D10 SINE Alu 23 100 -17 1 1320 405 326 93 38 chr9 96355301 96355614 -27720558 - L2 LINE L2 -944 2475 2146 1 1320 825 217 0 0 chr9 96355742 96355885 -27720287 - B1_Mur2 SINE Alu -6 143 1 1 1320 1127 83 99 12 chr9 96356799 96356970 -27719202 + B2_Mm2 SINE B2 1 186 -9 1 1320 544 164 241 0 chr9 96357192 96357308 -27718864 - B1_Mur2 SINE Alu -3 146 3 1 1320 258 169 15 92 chr9 96357385 96357450 -27718722 + PB1D9 SINE Alu 61 120 0 1 1320 246 295 124 0 chr9 96358155 96358260 -27717912 - RMER15 LTR ERVL -36 539 422 1 1320 1495 74 0 5 chr9 96358604 96358794 -27717378 - B2_Mm2 SINE B2 -6 189 1 1 1320 558 0 0 0 chr9 96359235 96359297 -27716875 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 1 1320 940 292 68 16 chr9 96359491 96359749 -27716423 + MTEb LTR MaLR 1 265 -114 1 1320 3967 100 16 12 chr9 96359749 96360314 -27715858 - RMER2 LTR ERV1 0 567 1 1 1320 940 292 68 16 chr9 96360314 96360365 -27715807 + MTEb LTR MaLR 266 325 -54 1 1320 285 75 0 0 chr9 96360369 96360409 -27715763 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1320 935 152 0 0 chr9 96360412 96360557 -27715615 - B1_Mur4 SINE Alu 0 150 6 1 1320 233 281 37 142 chr9 96360625 96360787 -27715385 + B4A SINE B4 8 152 -140 1 1320 358 185 223 21 chr9 96360727 96360821 -27715351 + PB1D7 SINE Alu 7 119 -1 1 1320 247 263 73 14 chr9 96361254 96361355 -27714817 - ID2 SINE ID -47 105 1 1 1320 255 242 0 0 chr9 96361377 96361439 -27714733 - L1ME2 LINE L1 -27 6137 6076 1 1320 249 330 11 0 chr9 96361679 96361767 -27714405 - L1M5 LINE L1 -479 5685 5597 1 1320 527 323 18 30 chr9 96361785 96361951 -27714221 - RSINE1 SINE B4 0 165 2 1 1320 423 0 0 0 chr9 96362054 96362101 -27714071 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1320 718 219 118 15 chr9 96362142 96362337 -27713835 - B3 SINE B2 -1 215 1 1 1320 455 225 171 0 chr9 96362435 96362546 -27713626 - B1_Mur2 SINE Alu -19 130 1 1 1320 528 267 35 49 chr9 96363027 96363151 -27713021 + ID_B1 SINE B4 85 212 -12 1 1320 243 0 0 0 chr9 96363151 96363178 -27712994 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1320 528 267 35 49 chr9 96363178 96363195 -27712977 + ID_B1 SINE B4 213 224 0 1 1320 224 333 12 0 chr9 96363415 96363496 -27712676 + RSINE1 SINE B4 84 165 0 1 1320 658 240 26 93 chr9 96363534 96363727 -27712445 - B3A SINE B2 -17 181 2 1 1320 423 0 0 0 chr9 96363736 96363783 -27712389 + (TTA)n Simple_repeat Simple_repeat 3 49 0 1 1320 860 164 0 29 chr9 96363783 96363921 -27712251 - B1_Mur1 SINE Alu -15 134 1 1 1320 287 330 111 9 chr9 96364157 96364374 -27711798 + MLT1L LTR MaLR 369 607 -3 1 1320 387 247 112 0 chr9 96364635 96364724 -27711448 - B1F SINE Alu -8 141 43 1 1320 456 233 30 136 chr9 96364938 96365107 -27711065 - RSINE1 SINE B4 -11 154 4 1 1320 351 0 0 0 chr9 96365445 96365484 -27710688 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1320 300 261 72 48 chr9 96365531 96365656 -27710516 - MLT1A0 LTR MaLR -12 353 226 1 1320 501 277 52 39 chr9 96365853 96366007 -27710165 - RSINE1 SINE B4 -8 157 2 1 1320 284 244 207 11 chr9 96366016 96366103 -27710069 - B1F SINE Alu -7 142 39 1 1320 252 0 0 0 chr9 96366186 96366214 -27709958 + (CAGGC)n Simple_repeat Simple_repeat 1 28 0 1 1320 453 280 68 0 chr9 96366291 96366423 -27709749 - B4 SINE B4 -149 143 3 1 1320 522 268 80 0 chr9 96366560 96366698 -27709474 - B1F SINE Alu 0 149 1 1 1320 600 91 0 0 chr9 96366703 96366791 -27709381 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1320 3473 94 12 12 chr9 96367030 96367526 -27708646 + MT2B2 LTR ERVL 89 584 0 1 1320 423 162 40 0 chr9 96368402 96368476 -27707696 + PB1D10 SINE Alu 32 108 -9 1 1320 581 165 27 14 chr9 96368526 96368662 -27707510 - B1_Mus2 SINE Alu -1 146 10 1 1320 762 254 41 27 chr9 96368918 96369137 -27707035 + MTEa LTR MaLR 1 222 -157 1 1320 246 203 186 0 chr9 96369625 96369684 -27706488 - PB1D10 SINE Alu -15 102 33 1 1320 1205 55 0 7 chr9 96369938 96370086 -27706086 + B1_Mus1 SINE Alu 1 147 -1 1 1320 258 208 85 94 chr9 96370822 96370928 -27705244 + PB1D7 SINE Alu 7 111 -9 1 1320 701 259 70 11 chr9 96370982 96371169 -27705003 - B3 SINE B2 -17 199 2 1 1320 246 301 60 12 chr9 96371200 96371284 -27704888 - B3A SINE B2 -109 89 2 1 1320 229 246 8 81 chr9 96372452 96372576 -27703596 + Lx8 LINE L1 7357 7471 -2 1 1320 323 123 84 0 chr9 96373044 96373109 -27703063 + B1_Mur2 SINE Alu 56 130 -19 1 1320 418 224 132 81 chr9 96373223 96373359 -27702813 - B1F SINE Alu -4 145 3 1 1320 447 233 119 8 chr9 96373410 96373544 -27702628 - B1F2 SINE Alu 0 149 1 1 1320 786 68 246 0 chr9 96373603 96373721 -27702451 + B1_Mus1 SINE Alu 2 148 0 1 1320 24 0 0 0 chr9 96373721 96373745 -27702427 + AT_rich Low_complexity Low_complexity 1 24 0 1 1320 22 35 0 0 chr9 96373826 96373855 -27702317 + AT_rich Low_complexity Low_complexity 1 29 0 1 1320 541 245 56 21 chr9 96373964 96374106 -27702066 - RSINE1 SINE B4 -17 148 2 1 1320 319 246 109 80 chr9 96374853 96374990 -27701182 - ID_B1 SINE B4 -2 222 82 1 1320 418 173 62 0 chr9 96375095 96375176 -27700996 - ID_B1 SINE B4 -3 221 136 1 1320 565 256 35 45 chr9 96375375 96375575 -27700597 - B3A SINE B2 0 198 1 1 1320 222 225 79 66 chr9 96375608 96375684 -27700488 + B1F SINE Alu 5 81 -68 1 1320 957 159 205 6 chr9 96375701 96375872 -27700300 - B3 SINE B2 -11 205 1 1 1320 1691 31 0 0 chr9 96376432 96376625 -27699547 + B2_Mm1a SINE B2 1 193 0 1 1320 426 210 116 16 chr9 96376677 96376798 -27699374 + B3A SINE B2 2 134 -64 1 1320 634 171 60 37 chr9 96376873 96377007 -27699165 - B1_Mur1 SINE Alu -10 139 3 1 1320 774 69 259 0 chr9 96377055 96377171 -27699001 + B1_Mus2 SINE Alu 1 146 -1 1 1320 253 265 0 0 chr9 96377227 96377276 -27698896 + RSINE1 SINE B4 57 105 -60 1 1320 492 32 0 0 chr9 96377294 96377356 -27698816 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1320 725 169 29 14 chr9 96377398 96377536 -27698636 - B1_Mur3 SINE Alu 0 149 10 1 1320 1179 62 0 0 chr9 96377583 96377727 -27698445 + B1_Mus2 SINE Alu 4 147 0 1 1320 537 238 167 0 chr9 96377752 96377878 -27698294 - B1_Mur1 SINE Alu -1 148 2 1 1320 232 229 16 0 chr9 96377910 96377971 -27698201 - ID_B1 SINE B4 -77 147 86 1 1320 280 211 0 0 chr9 96377917 96377974 -27698198 - PB1D10 SINE Alu -59 58 2 1 1320 748 256 51 10 chr9 96378274 96378471 -27697701 - B3 SINE B2 -9 207 3 1 1320 245 316 109 17 chr9 96378504 96378623 -27697549 + ID_B1 SINE B4 88 217 -7 1 1320 222 191 0 0 chr9 96378756 96378798 -27697374 + (CCCGG)n Simple_repeat Simple_repeat 2 43 0 1 1320 483 18 0 0 chr9 96379419 96379475 -27696697 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1 1320 1148 43 7 0 chr9 96379488 96379626 -27696546 + B1_Mm SINE Alu 1 139 -8 1 1320 273 57 0 0 chr9 96379626 96379661 -27696511 + (CAAG)n Simple_repeat Simple_repeat 1 35 0 1 1320 691 214 17 36 chr9 96379669 96379832 -27696340 - B3 SINE B2 -19 176 5 1 1320 234 0 0 0 chr9 96379840 96379866 -27696306 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1320 769 196 21 7 chr9 96380183 96380327 -27695845 + B1_Mur4 SINE Alu 5 150 0 1 1320 321 255 83 19 chr9 96381173 96381281 -27694891 - MTC LTR MaLR -14 407 293 1 1320 698 190 0 0 chr9 96381325 96381446 -27694726 - B3 SINE B2 -86 130 10 1 1320 434 293 99 15 chr9 96382564 96382765 -27693407 - L1MB3 LINE L1 -200 5983 5766 1 1320 582 262 43 97 chr9 96382763 96383042 -27693130 + Lx8 LINE L1 6963 7226 -247 1 1320 255 170 0 0 chr9 96383090 96383137 -27693035 + GA-rich Low_complexity Low_complexity 1 47 0 1 1320 226 311 86 7 chr9 96383277 96383429 -27692743 - L1MB3 LINE L1 -407 5764 5601 1 1320 370 272 0 12 chr9 96383503 96383585 -27692587 - PB1D10 SINE Alu -1 116 36 1 1320 180 313 75 0 chr9 96384170 96384237 -27691935 + MIR SINE MIR 72 143 -65 1 1320 964 238 161 11 chr9 96384270 96384550 -27691622 - MTEa LTR MaLR 0 379 58 1 1320 2791 139 77 17 chr9 96384746 96385228 -27690944 + RLTR11A LTR ERVK 18 528 0 1 1320 661 190 0 25 chr9 96385243 96385362 -27690810 - B1F2 SINE Alu -3 146 31 1 1320 460 298 16 21 chr9 96385737 96385882 -27690290 - B1F2 SINE Alu -10 139 1 1 1320 235 220 20 0 chr9 96385978 96386028 -27690144 + CT-rich Low_complexity Low_complexity 1 51 0 1 1320 1043 73 0 43 chr9 96386032 96386219 -27689953 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1320 306 222 27 14 chr9 96386219 96386292 -27689880 - ID_B1 SINE B4 -5 219 146 1 1320 224 272 114 19 chr9 96386292 96386324 -27689848 - PB1D9 SINE Alu -5 115 1 1 1320 782 212 7 14 chr9 96386912 96387060 -27689112 + B1_Mur1 SINE Alu 2 148 -1 1 1320 572 266 21 7 chr9 96387118 96387258 -27688914 - ID_B1 SINE B4 0 224 83 1 1320 1345 104 0 20 chr9 96387438 96387634 -27688538 - B2_Mm2 SINE B2 -2 193 2 1 1320 7178 66 6 0 chr9 96387659 96388547 -27687625 + RLTR13B1 LTR ERVK 1 893 0 1 1320 1708 21 0 0 chr9 96388869 96389061 -27687111 - B2_Mm1a SINE B2 0 193 2 1 1320 546 174 0 0 chr9 96389142 96389228 -27686944 - Lx8 LINE L1 -164 7309 7224 1 1320 1108 285 227 15 chr9 96389235 96389777 -27686395 - Lx8 LINE L1 -759 6714 6058 1 1320 389 252 114 0 chr9 96389777 96389908 -27686264 - B4 SINE B4 -50 242 97 1 1320 744 168 6 80 chr9 96389917 96389931 -27686241 - B1_Mur4 SINE Alu 0 150 139 1 1320 1211 48 0 20 chr9 96389931 96390080 -27686092 - B1_Mus2 SINE Alu 0 147 2 1 1320 744 168 6 80 chr9 96390080 96390227 -27685945 - B1_Mur4 SINE Alu -12 138 1 1 1320 1322 89 39 0 chr9 96390439 96390619 -27685553 + B2_Mm2 SINE B2 2 188 -7 1 1320 276 246 0 0 chr9 96390650 96390711 -27685461 + B1_Mur4 SINE Alu 17 77 -73 1 1320 225 154 0 0 chr9 96390723 96390762 -27685410 + GA-rich Low_complexity Low_complexity 2 40 0 1 1320 672 213 27 47 chr9 96391379 96391527 -27684645 - B1F SINE Alu 0 149 5 1 1320 182 37 0 36 chr9 96391567 96391595 -27684577 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1320 228 210 167 74 chr9 96391600 96391708 -27684464 + ID_B1 SINE B4 73 190 -34 1 1320 324 234 128 78 chr9 96391611 96391713 -27684459 + PB1D7 SINE Alu 6 112 -8 1 1320 1334 101 21 0 chr9 96391823 96392011 -27684161 - B2_Mm2 SINE B2 -2 193 2 1 1320 539 273 21 7 chr9 96392699 96392843 -27683329 + ID_B1 SINE B4 79 224 0 1 1320 262 258 0 16 chr9 96394172 96394235 -27681937 + C-rich Low_complexity Low_complexity 5 66 0 1 1320 300 27 0 0 chr9 96394466 96394503 -27681669 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1320 1224 42 0 0 chr9 96395033 96395175 -27680997 + B1_Mus2 SINE Alu 1 142 -5 1 1320 210 37 0 0 chr9 96395179 96395206 -27680966 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1320 711 163 15 18 chr9 96395297 96395429 -27680743 - B1_Mur3 SINE Alu -1 148 17 1 1320 289 289 36 12 chr9 96395544 96395628 -27680544 - 5S rRNA rRNA -31 90 5 1 1320 189 289 110 11 chr9 96395690 96395781 -27680391 + MIR SINE MIR 40 139 -69 1 1320 1032 212 10 10 chr9 96396175 96396384 -27679788 + B3 SINE B2 1 209 -7 1 1320 932 154 74 0 chr9 96396926 96397101 -27679071 - B2_Mm2 SINE B2 -6 189 2 1 1320 270 0 0 0 chr9 96397837 96397867 -27678305 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1320 1440 80 16 0 chr9 96398340 96398527 -27677645 - B2_Mm2 SINE B2 -4 191 2 1 1320 945 156 167 32 chr9 96398546 96398732 -27677440 - B3 SINE B2 -5 211 1 1 1320 2302 79 30 59 chr9 96398923 96399260 -27676912 - ORR1A2 LTR MaLR 0 327 1 1 1320 501 324 98 7 chr9 96399419 96399562 -27676610 + RSINE1 SINE B4 8 163 -2 1 1320 845 155 42 30 chr9 96399681 96399847 -27676325 + B2_Mm2 SINE B2 28 195 0 1 1320 405 298 68 63 chr9 96399856 96400046 -27676126 + B3A SINE B2 2 192 -6 1 1320 692 172 70 0 chr9 96400055 96400183 -27675989 + B1_Mur4 SINE Alu 2 138 -12 1 1320 1145 75 0 0 chr9 96400185 96400331 -27675841 + B1_Mus1 SINE Alu 2 147 -1 1 1320 198 0 0 0 chr9 96400331 96400353 -27675819 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1 1320 425 293 116 35 chr9 96400405 96400603 -27675569 + B4 SINE B4 57 270 -22 1 1320 252 0 0 0 chr9 96400747 96400775 -27675397 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1320 1372 79 17 0 chr9 96400981 96401158 -27675014 + B2_Mm2 SINE B2 2 181 -14 1 1320 23 0 0 0 chr9 96401295 96401318 -27674854 + AT_rich Low_complexity Low_complexity 1 23 0 1 1320 802 242 57 47 chr9 96401910 96402122 -27674050 + B3 SINE B2 2 215 -1 1 1320 1497 58 11 0 chr9 96402326 96402516 -27673656 + B2_Mm1t SINE B2 1 192 -1 1 1320 823 271 64 38 chr9 96402670 96402984 -27673188 + ORR1E LTR MaLR 18 339 -20 1 1320 300 27 0 0 chr9 96403036 96403073 -27673099 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1320 1159 61 20 0 chr9 96403077 96403224 -27672948 - B2_Mm2 SINE B2 -45 150 1 1 1320 342 0 0 0 chr9 96403670 96403708 -27672464 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1320 233 246 31 0 chr9 96404616 96404681 -27671491 + MER5A DNA MER1_type 2 68 -121 1 1320 414 207 12 0 chr9 96405269 96405351 -27670821 - B1_Mur1 SINE Alu -23 126 44 1 1320 353 261 0 22 chr9 96405412 96405502 -27670670 + RMER12 LTR ERVK 764 851 -471 1 1320 248 186 17 0 chr9 96405506 96405565 -27670607 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1320 411 316 15 15 chr9 96406028 96406163 -27670009 - ID_B1 SINE B4 -16 208 74 1 1320 243 254 0 16 chr9 96406616 96406680 -27669492 + CT-rich Low_complexity Low_complexity 4 66 0 1 1320 3625 10 2 0 chr9 96407310 96407705 -27668467 - MTA_Mm LTR MaLR 0 396 1 1 1320 549 210 13 59 chr9 96407837 96407860 -27668312 + ID_B1 SINE B4 80 222 0 1 1320 1030 55 0 0 chr9 96407860 96407987 -27668185 + B1_Mus1 SINE Alu 22 148 0 1 1320 180 0 0 0 chr9 96407990 96408010 -27668162 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 1 1320 261 0 0 0 chr9 96408010 96408039 -27668133 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1320 307 250 27 14 chr9 96408103 96408176 -27667996 + ID4_ SINE ID 1 74 -9 1 1320 230 315 0 61 chr9 96408500 96408598 -27667574 + B4A SINE B4 201 292 0 1 1320 378 254 46 86 chr9 96408690 96408767 -27667405 - HAL1-3A_ME LINE L1 -738 2120 2044 1 1320 270 81 0 0 chr9 96408767 96408804 -27667368 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 1 1320 378 254 46 86 chr9 96408804 96408877 -27667295 - HAL1-3A_ME LINE L1 -815 2043 1976 1 1320 489 273 121 73 chr9 96408912 96409185 -27666987 - B4A SINE B4 -6 286 1 1 1320 232 102 41 0 chr9 96409324 96409373 -27666799 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 1 1320 484 270 52 0 chr9 96409381 96409496 -27666676 - RSINE1 SINE B4 -3 162 42 1 1320 236 161 16 0 chr9 96409901 96409963 -27666209 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1320 350 295 70 45 chr9 96409975 96410174 -27665998 - Charlie2b DNA MER1_type -40 2742 2539 1 1320 294 29 0 0 chr9 96410318 96410353 -27665819 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1320 853 267 10 19 chr9 96410353 96410559 -27665613 - ID_B1 SINE B4 -19 205 2 1 1320 236 246 15 30 chr9 96410631 96410698 -27665474 + MLT1A0 LTR MaLR 300 365 0 1 1320 22 35 0 0 chr9 96410952 96410981 -27665191 + AT_rich Low_complexity Low_complexity 1 29 0 1 1320 225 0 0 0 chr9 96411037 96411062 -27665110 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1320 396 290 31 165 chr9 96411076 96411208 -27664964 - B4 SINE B4 -69 223 112 1 1320 1188 85 101 11 chr9 96411208 96411367 -27664805 + B2_Mm2 SINE B2 2 177 -18 1 1320 186 43 0 0 chr9 96411367 96411390 -27664782 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1320 1188 85 101 11 chr9 96411390 96411408 -27664764 + B2_Mm2 SINE B2 178 195 0 1 1320 396 290 31 165 chr9 96411408 96411440 -27664732 - B4 SINE B4 -181 111 81 1 1320 1172 116 20 40 chr9 96411440 96411638 -27664534 - B2_Mm2 SINE B2 0 195 2 1 1320 396 290 31 165 chr9 96411638 96411666 -27664506 - B4 SINE B4 -212 80 56 1 1320 367 278 75 0 chr9 96411680 96411694 -27664478 - RSINE1 SINE B4 -21 144 131 1 1320 411 21 0 0 chr9 96411694 96411742 -27664430 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1320 367 278 75 0 chr9 96411742 96411860 -27664312 - RSINE1 SINE B4 -35 130 3 1 1320 203 309 57 29 chr9 96412468 96412538 -27663634 - MIRb SINE MIR -74 194 123 1 1320 491 266 9 26 chr9 96413092 96413208 -27662964 + B1F1 SINE Alu 30 143 -6 1 1320 494 291 151 0 chr9 96413494 96413666 -27662506 - MLT1D LTR MaLR -307 198 1 1 1320 328 300 0 35 chr9 96414064 96414158 -27662014 + B4 SINE B4 2 95 -197 1 1320 613 304 110 8 chr9 96414158 96414413 -27661759 + B4A SINE B4 1 281 -11 1 1320 328 300 0 35 chr9 96414413 96414432 -27661740 + B4 SINE B4 96 111 -181 1 1320 483 297 113 18 chr9 96414524 96414692 -27661480 + B4 SINE B4 106 289 -3 1 1320 217 200 30 15 chr9 96414726 96414792 -27661380 + GA-rich Low_complexity Low_complexity 2 68 0 1 1320 670 257 99 24 chr9 96415120 96415331 -27660841 - RLTR18 LTR ERVK -94 418 192 1 1320 710 258 21 47 chr9 96415512 96415703 -27660469 - RLTR18 LTR ERVK -430 186 1 1 1320 321 68 0 0 chr9 96415741 96415785 -27660387 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 1 1320 25 0 0 0 chr9 96415791 96415816 -27660356 + AT_rich Low_complexity Low_complexity 1 25 0 1 1320 459 36 0 0 chr9 96415832 96415887 -27660285 - B2_Mm2 SINE B2 -94 101 47 1 1320 1262 113 23 0 chr9 96415915 96416092 -27660080 - B2_Mm2 SINE B2 -14 181 1 1 1320 397 290 9 45 chr9 96416586 96416698 -27659474 - PB1D10 SINE Alu -3 114 7 1 1320 273 98 0 0 chr9 96416773 96416814 -27659358 + (CTGGGG)n Simple_repeat Simple_repeat 2 42 0 1 1320 238 208 0 0 chr9 96416837 96416890 -27659282 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 1 1320 601 229 194 6 chr9 96416891 96417071 -27659101 + MTD LTR MaLR 12 225 -194 1 1320 625 208 24 8 chr9 96417082 96417208 -27658964 + B1_Mur1 SINE Alu 22 149 0 1 1320 996 136 0 0 chr9 96417211 96417373 -27658799 + (CAA)n Simple_repeat Simple_repeat 2 163 0 1 1320 669 240 7 25 chr9 96417390 96417567 -27658605 - MTD LTR MaLR -244 177 2 1 1320 583 162 23 5 chr9 96417627 96417723 -27658449 + MTC LTR MaLR 1 96 -323 1 1320 215 111 0 53 chr9 96417723 96417761 -27658411 + B1_Mur4 SINE Alu 1 36 -114 1 1320 564 165 10 0 chr9 96417762 96417859 -27658313 - MTC LTR MaLR -323 98 1 1 1320 314 266 137 65 chr9 96418381 96418534 -27657638 - HAL1-3A_ME LINE L1 -413 2445 2282 1 1320 877 167 0 0 chr9 96418537 96418669 -27657503 - B1_Mur1 SINE Alu 0 149 18 1 1320 299 268 0 169 chr9 96418557 96418705 -27657467 - MT2B LTR ERVL -326 275 153 1 1320 1217 122 9 3 chr9 96418733 96418923 -27657249 + B2_Mm2 SINE B2 1 199 -17 1 1320 752 202 139 21 chr9 96419374 96419561 -27656611 + B3 SINE B2 1 209 -7 1 1320 359 282 71 78 chr9 96420153 96420307 -27655865 + MER112 DNA MER1_type 14 166 -95 1 1320 805 267 29 0 chr9 96420333 96420543 -27655629 - B3 SINE B2 0 216 1 1 1320 497 235 8 57 chr9 96420769 96420891 -27655281 + B3A SINE B2 76 191 -7 1 1320 650 249 97 0 chr9 96420952 96421137 -27655035 + B3 SINE B2 1 203 -13 1 1320 1223 49 0 0 chr9 96421908 96422052 -27654120 + B1_Mm SINE Alu 1 144 -3 1 1320 1362 64 0 6 chr9 96422083 96422257 -27653915 + B2_Mm2 SINE B2 3 175 -20 1 1320 329 236 97 0 chr9 96422280 96422352 -27653820 + ID4_ SINE ID 5 83 0 1 1320 339 273 111 35 chr9 96422441 96422585 -27653587 + RLTR42-int LTR ERVK 1230 1384 -4138 1 1320 1220 27 0 39 chr9 96422765 96422918 -27653254 - B1_Mus2 SINE Alu 0 147 1 1 1320 414 324 29 7 chr9 96423470 96423610 -27652562 - RSINE1 SINE B4 -7 158 16 1 1320 1222 128 17 0 chr9 96423647 96423827 -27652345 + B2_Mm2 SINE B2 1 183 -12 1 1320 852 294 12 29 chr9 96423841 96424086 -27652086 + Lx7 LINE L1 6566 6806 -890 1 1320 455 335 20 7 chr9 96424246 96424396 -27651776 - Lx7 LINE L1 -946 6750 6599 1 1320 773 335 136 13 chr9 96424423 96424947 -27651225 + Lx8 LINE L1 6830 7417 -56 1 1320 303 302 107 34 chr9 96424973 96425151 -27651021 + HAL1-3A_ME LINE L1 2165 2355 -503 1 1320 531 82 0 0 chr9 96425151 96425224 -27650948 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1320 682 220 31 83 chr9 96426001 96426229 -27649943 + MLT1D LTR MaLR 223 438 -67 1 1320 623 109 16 25 chr9 96426236 96426358 -27649814 + CT-rich Low_complexity Low_complexity 2 122 0 1 1320 585 251 98 10 chr9 96426452 96426645 -27649527 + RMER15 LTR ERVL 365 574 -1 1 1320 302 212 62 0 chr9 96426947 96426959 -27649213 - ID SINE ID -138 86 37 1 1320 356 145 16 0 chr9 96426959 96427021 -27649151 - tRNA-Ala-GCY_ tRNA tRNA -10 65 3 1 1320 416 213 0 0 chr9 96427837 96427912 -27648260 + ID4 SINE ID 5 79 -4 1 1320 294 261 41 52 chr9 96428210 96428307 -27647865 + RSINE1 SINE B4 3 98 -67 1 1320 645 256 30 0 chr9 96428899 96429032 -27647140 + B1F SINE Alu 12 148 -1 1 1320 443 145 42 0 chr9 96429049 96429143 -27647029 + PB1D10 SINE Alu 6 113 -7 1 1320 267 54 0 0 chr9 96429144 96429181 -27646991 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1 1320 270 250 50 74 chr9 96429181 96429206 -27646966 + MT2B2 LTR ERVL 269 286 -298 1 1320 663 229 15 0 chr9 96429192 96429323 -27646849 + B1_Mur1 SINE Alu 17 149 0 1 1320 327 297 76 38 chr9 96429367 96429472 -27646700 + RSINE1 SINE B4 57 165 0 1 1320 341 197 68 26 chr9 96429613 96429768 -27646404 - ORR1D1 LTR MaLR 0 384 162 1 1320 385 293 86 39 chr9 96429727 96429855 -27646317 - RSINE1 SINE B4 -28 137 4 1 1320 419 235 0 73 chr9 96429856 96429966 -27646206 + L1MB2 LINE L1 6029 6130 -41 1 1320 911 70 156 0 chr9 96429966 96430094 -27646078 + B1_Mus1 SINE Alu 1 148 0 1 1320 261 72 0 67 chr9 96430094 96430154 -27646018 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 1 1320 24 0 0 0 chr9 96430210 96430234 -27645938 + AT_rich Low_complexity Low_complexity 1 24 0 1 1320 502 150 212 0 chr9 96430298 96430411 -27645761 + B3 SINE B2 80 216 0 1 1320 2894 56 63 0 chr9 96430652 96431048 -27645124 - BGLII LTR ERVK 0 421 1 1 1320 21 0 0 0 chr9 96431705 96431726 -27644446 + AT_rich Low_complexity Low_complexity 1 21 0 1 1320 207 317 120 40 chr9 96431826 96431951 -27644221 + MIRb SINE MIR 114 248 -20 1 1320 194 128 26 0 chr9 96432050 96432089 -27644083 + CT-rich Low_complexity Low_complexity 4 43 0 1 1320 711 236 0 13 chr9 96432365 96432515 -27643657 + B1F SINE Alu 1 148 -1 1 1320 483 73 0 0 chr9 96432815 96432883 -27643289 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1320 611 233 13 40 chr9 96432884 96433036 -27643136 - B3A SINE B2 -50 148 1 1 1320 572 252 14 22 chr9 96434413 96434551 -27641621 + B1_Mur1 SINE Alu 13 149 0 1 1320 462 312 114 53 chr9 96436119 96436549 -27639623 - L1M2 LINE L1 -1218 4925 4470 1 1320 224 59 0 29 chr9 96436716 96436751 -27639421 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1 1320 183 80 0 0 chr9 96436750 96436775 -27639397 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1320 1229 68 0 0 chr9 96436775 96436923 -27639249 - B1_Mus1 SINE Alu 0 148 1 1 1320 295 227 53 0 chr9 96438738 96438813 -27637359 + PB1D10 SINE Alu 2 80 -37 1 1320 228 35 0 0 chr9 96439236 96439265 -27636907 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1320 1124 52 0 0 chr9 96439265 96439399 -27636773 - B1_Mus2 SINE Alu -12 135 2 1 1320 23 0 0 0 chr9 96439797 96439820 -27636352 + AT_rich Low_complexity Low_complexity 1 23 0 1 1320 282 193 0 0 chr9 96440488 96440545 -27635627 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1320 282 116 0 0 chr9 96440554 96440597 -27635575 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1320 311 279 84 28 chr9 96440934 96440960 -27635212 + B4 SINE B4 57 88 -204 1 1320 511 191 32 0 chr9 96440960 96441054 -27635118 + PB1D9 SINE Alu 1 97 -23 1 1320 201 74 0 0 chr9 96442379 96442406 -27633766 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1320 373 323 65 0 chr9 96442993 96443117 -27633055 - L2a LINE L2 -1 3425 3294 1 1320 1413 70 37 5 chr9 96443295 96443482 -27632690 - B2_Mm2 SINE B2 -1 194 2 1 1320 30 27 0 0 chr9 96444432 96444469 -27631703 + AT_rich Low_complexity Low_complexity 1 37 0 1 1320 211 176 0 0 chr9 96444629 96444663 -27631509 + (CG)n Simple_repeat Simple_repeat 2 35 0 1 1320 375 231 217 87 chr9 96445531 96445692 -27630480 - B3A SINE B2 -16 182 1 1 1320 267 282 12 60 chr9 96445806 96445889 -27630283 - ID4_ SINE ID -2 81 3 1 1320 180 0 0 0 chr9 96446913 96446933 -27629239 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1 1320 1205 52 0 0 chr9 96446933 96447086 -27629086 - B2_Mm2 SINE B2 -41 154 2 1 1320 210 71 0 0 chr9 96447379 96447407 -27628765 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1320 317 278 0 0 chr9 96447429 96447501 -27628671 - ID4 SINE ID -10 73 2 1 1320 289 213 49 0 chr9 96447507 96447568 -27628604 - B3 SINE B2 -14 202 139 1 1320 399 244 33 115 chr9 96447597 96447719 -27628453 - B3 SINE B2 -69 147 25 1 1320 674 194 73 0 chr9 96447759 96447883 -27628289 - B1_Mus1 SINE Alu -5 143 11 1 1320 316 253 0 128 chr9 96447790 96447899 -27628273 - MT2B LTR ERVL -344 257 163 1 1320 25 31 0 0 chr9 96447901 96447933 -27628239 + AT_rich Low_complexity Low_complexity 1 32 0 1 1320 353 123 0 15 chr9 96447933 96447999 -27628173 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1320 562 299 19 13 chr9 96448011 96448170 -27628002 - RSINE1 SINE B4 -4 161 2 1 1320 214 356 0 0 chr9 96448728 96448801 -27627371 - L2a LINE L2 -9 3417 3345 1 1320 341 301 139 56 chr9 96449777 96449992 -27626180 + HAL1 LINE L1 1324 1556 -951 1 1320 327 324 36 9 chr9 96450014 96450126 -27626046 - 5S rRNA rRNA -4 117 3 1 1320 489 143 20 67 chr9 96450178 96450320 -27625852 - MYSERV6-int LTR ERVK -977 7982 7848 1 1320 1237 41 0 0 chr9 96450320 96450466 -27625706 - B1_Mus2 SINE Alu 0 147 2 1 1320 771 319 86 35 chr9 96450589 96451080 -27625092 + Tigger15a DNA TcMar 131 646 -69 1 1320 1090 70 28 7 chr9 96451419 96451564 -27624608 - B1_Mus1 SINE Alu 0 148 1 1 1320 478 260 6 104 chr9 96451681 96451844 -27624328 - B1_Mur2 SINE Alu -2 147 1 1 1320 26 0 0 0 chr9 96451904 96451930 -27624242 + AT_rich Low_complexity Low_complexity 1 26 0 1 1320 334 215 51 9 chr9 96452153 96452235 -27623937 + 7SLRNA srpRNA srpRNA 15 105 -12 1 1320 311 287 118 25 chr9 96452432 96452593 -27623579 + Tigger13a DNA MER2_type 102 277 -494 1 1320 874 227 40 17 chr9 96453027 96453202 -27622970 - B3 SINE B2 -31 185 7 1 1320 23 0 0 0 chr9 96453651 96453674 -27622498 + AT_rich Low_complexity Low_complexity 1 23 0 1 1320 831 157 30 0 chr9 96453687 96453821 -27622351 + B1_Mm SINE Alu 9 146 -1 1 1320 252 327 105 61 chr9 96453721 96453998 -27622174 + RLTR25B LTR ERVK 444 732 -296 1 1320 207 0 0 0 chr9 96454258 96454281 -27621891 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1320 1003 41 0 0 chr9 96454283 96454404 -27621768 - B1_Mus1 SINE Alu -6 142 22 1 1320 493 248 18 0 chr9 96454487 96454596 -27621576 - PB1D7 SINE Alu -8 112 2 1 1320 750 168 16 0 chr9 96454607 96454732 -27621440 - B1_Mur4 SINE Alu -23 127 1 1 1320 1141 35 0 40 chr9 96456051 96456199 -27619973 - B1_Mus1 SINE Alu -5 143 2 1 1320 259 294 11 96 chr9 96456375 96456469 -27619703 + MT2B LTR ERVL 155 240 -361 1 1320 759 231 0 0 chr9 96456390 96456533 -27619639 + B1_Mur2 SINE Alu 7 149 0 1 1320 25 31 0 0 chr9 96456921 96456953 -27619219 + AT_rich Low_complexity Low_complexity 1 32 0 1 1320 318 290 121 21 chr9 96457014 96457155 -27619017 - RSINE1 SINE B4 -8 157 3 1 1320 485 306 169 23 chr9 96457227 96457404 -27618768 + MER20 DNA MER1_type 1 203 -16 1 1320 1032 132 28 33 chr9 96457516 96457697 -27618475 - B2_Mm2 SINE B2 -14 181 2 1 1320 2540 208 156 51 chr9 96457937 96458701 -27617471 + RCHARR1 DNA MER1_type 1 844 -130 1 1320 230 265 0 42 chr9 96459064 96459135 -27617037 - ID4 SINE ID -14 69 2 1 1320 290 189 263 0 chr9 96460644 96460739 -27615433 + RCHARR1 DNA MER1_type 855 974 0 1 1320 286 345 81 32 chr9 96461392 96461515 -27614657 + PB1D10 SINE Alu 10 138 -11 1 1320 353 296 12 0 chr9 96461531 96461612 -27614560 + ID4_ SINE ID 2 83 0 1 1320 852 167 14 0 chr9 96462532 96462676 -27613496 - B1_Mus1 SINE Alu -2 146 1 1 1320 270 333 0 0 chr9 96463720 96463801 -27612371 - ID4 SINE ID -1 82 2 1 1320 612 262 10 35 chr9 96463840 96464038 -27612134 - B3A SINE B2 -4 194 2 1 1320 1316 90 26 0 chr9 96464052 96464241 -27611931 - B2_Mm2 SINE B2 0 195 2 1 1320 1427 51 0 0 chr9 96465242 96465417 -27610755 + B2_Mm2 SINE B2 2 176 -19 1 1320 268 333 102 6 chr9 96465513 96465679 -27610493 + MIR SINE MIR 78 259 -3 1 1320 389 255 28 0 chr9 96466025 96466131 -27610041 + PB1D10 SINE Alu 1 109 -8 1 1320 242 275 136 84 chr9 96467066 96467389 -27608783 + ORR1E LTR MaLR 48 363 -11 1 1321 1076 217 19 0 chr9 96469154 96469366 -27606806 + B3 SINE B2 1 216 0 1 1321 692 239 118 10 chr9 96469865 96470068 -27606104 - URR1A DNA MER1_type 0 226 2 1 1321 265 265 6 58 chr9 96470526 96470698 -27605474 + (GTGTG)n Simple_repeat Simple_repeat 5 167 0 1 1321 3951 72 44 2 chr9 96471513 96472053 -27604119 - L1_Mus3 LINE L1 0 6638 6076 1 1321 446 66 0 0 chr9 96472053 96472114 -27604058 + L1_Mus3 LINE L1 6036 6096 -542 1 1321 212 351 0 38 chr9 96472618 96472698 -27603474 - MIR SINE MIR -175 87 11 1 1321 807 225 110 0 chr9 96473470 96473661 -27602511 + B3 SINE B2 2 213 -3 1 1321 22 0 0 0 chr9 96474036 96474058 -27602114 + AT_rich Low_complexity Low_complexity 1 22 0 1 1321 484 258 111 13 chr9 96474059 96474212 -27601960 + B3A SINE B2 1 168 -30 1 1321 287 302 8 108 chr9 96474746 96474876 -27601296 + MT2B LTR ERVL 154 270 -331 1 1321 705 224 14 6 chr9 96474763 96474911 -27601261 + B1_Mur1 SINE Alu 5 146 -2 1 1321 216 0 0 0 chr9 96474912 96474936 -27601236 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1321 579 277 139 26 chr9 96475071 96475501 -27600671 + L1MA5 LINE L1 5817 6295 -5 1 1321 1035 263 52 15 chr9 96475525 96475795 -27600377 + B4A SINE B4 1 280 -12 1 1321 483 271 21 7 chr9 96477036 96477177 -27598995 - RSINE1 SINE B4 -19 146 4 1 1321 257 269 0 0 chr9 96478495 96478547 -27597625 + polypyrimidine Low_complexity Low_complexity 4 55 0 1 1321 246 324 69 27 chr9 96478695 96478849 -27597323 - MIRc SINE MIR -38 230 62 1 1321 328 235 113 38 chr9 96478976 96479082 -27597090 - PB1D10 SINE Alu -1 116 3 1 1321 349 225 24 48 chr9 96478999 96479083 -27597089 - ID_B1 SINE B4 -60 164 83 1 1321 563 118 0 0 chr9 96481549 96481625 -27594547 + B3 SINE B2 2 77 -139 1 1321 214 318 33 22 chr9 96481625 96481639 -27594533 + ID_B1 SINE B4 2 92 -132 1 1321 474 18 0 0 chr9 96481641 96481696 -27594476 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1321 342 0 0 0 chr9 96481696 96481733 -27594439 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1321 22 56 0 0 chr9 96481748 96481784 -27594388 + AT_rich Low_complexity Low_complexity 1 36 0 1 1321 558 241 19 18 chr9 96482739 96482886 -27593286 - B1_Mur1 SINE Alu 0 149 2 1 1321 235 272 31 23 chr9 96484359 96484487 -27591685 + L1MDa LINE L1 860 988 -5630 1 1321 372 309 170 26 chr9 96485292 96485521 -27590651 - L1MC4a LINE L1 -22 7860 7599 1 1321 22 35 0 0 chr9 96485698 96485727 -27590445 + AT_rich Low_complexity Low_complexity 1 29 0 1 1321 2743 162 41 7 chr9 96485733 96486275 -27589897 - Lx2B LINE L1 -168 6832 6273 1 1321 757 232 84 26 chr9 96486461 96486651 -27589521 - B3 SINE B2 -11 205 5 1 1321 777 183 251 12 chr9 96486699 96486870 -27589302 - B3 SINE B2 -4 212 1 1 1321 330 132 0 0 chr9 96486934 96486987 -27589185 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1321 775 252 92 10 chr9 96486987 96487292 -27588880 - L1MA5 LINE L1 -78 6222 5893 1 1321 727 266 52 67 chr9 96487303 96487706 -27588466 - L1MC4a LINE L1 -711 7171 6775 1 1321 287 264 88 35 chr9 96487766 96487880 -27588292 - MER3 DNA MER1_type -89 120 1 1 1321 270 186 34 34 chr9 96488036 96488125 -27588047 + (CAAA)n Simple_repeat Simple_repeat 3 91 0 1 1321 440 208 123 48 chr9 96488207 96488434 -27587738 + L1MDa LINE L1 1930 2173 -4460 1 1321 350 222 251 28 chr9 96488446 96488622 -27587550 + L1MDa LINE L1 2205 2401 -4232 1 1321 3542 157 18 14 chr9 96488622 96489244 -27586928 + Lx LINE L1 6024 6647 -7 1 1321 350 222 251 28 chr9 96489244 96489350 -27586822 + L1MDa LINE L1 2402 2550 -4083 1 1321 485 298 0 26 chr9 96489463 96489580 -27586592 - B3A SINE B2 -84 114 1 1 1321 692 246 90 11 chr9 96489581 96489758 -27586414 - B3 SINE B2 -22 194 4 1 1321 368 242 101 18 chr9 96490495 96490663 -27585509 + L1ME1 LINE L1 5827 6008 -171 1 1321 668 259 25 50 chr9 96490746 96490945 -27585227 + B3A SINE B2 1 194 -4 1 1321 403 148 24 12 chr9 96491137 96491219 -27584953 - B1_Mus2 SINE Alu 0 147 65 1 1321 707 180 16 0 chr9 96491246 96491374 -27584798 - B1_Mur2 SINE Alu -19 130 1 1 1321 230 273 16 127 chr9 96491262 96491388 -27584784 - MT2B LTR ERVL -337 264 153 1 1321 25 51 0 0 chr9 96491432 96491471 -27584701 + AT_rich Low_complexity Low_complexity 1 39 0 1 1321 200 317 0 129 chr9 96492855 96492971 -27583201 - L2c LINE L2 -16 3371 3271 1 1321 233 370 0 11 chr9 96493747 96493840 -27582332 + Tigger12c DNA MER2_type 6 97 -637 1 1321 261 0 0 0 chr9 96493840 96493869 -27582303 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1321 279 222 3 20 chr9 96493933 96493999 -27582173 - PB1D7 SINE Alu -5 144 54 1 1321 222 37 0 0 chr9 96493999 96494026 -27582146 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1321 413 291 157 14 chr9 96494046 96494472 -27581700 + L1MEg LINE L1 731 1217 -4867 1 1321 657 251 111 0 chr9 96494649 96494820 -27581352 + B3 SINE B2 10 199 -17 1 1321 486 0 0 0 chr9 96494913 96494967 -27581205 + (CCA)n Simple_repeat Simple_repeat 3 56 0 1 1321 525 225 118 52 chr9 96495245 96495381 -27580791 + B1_Mur1 SINE Alu 5 149 0 1 1321 596 241 77 113 chr9 96495490 96495549 -27580623 + ID_B1 SINE B4 28 174 -118 1 1321 1025 44 44 15 chr9 96495549 96495686 -27580486 + B1_Mus1 SINE Alu 8 148 0 1 1321 596 241 77 113 chr9 96495686 96495713 -27580459 + ID_B1 SINE B4 175 246 -46 1 1321 565 252 38 43 chr9 96496287 96496498 -27579674 + B3 SINE B2 1 210 -6 1 1321 956 206 72 0 chr9 96496518 96496712 -27579460 + B3 SINE B2 1 208 -8 1 1321 1703 192 141 106 chr9 96497511 96498162 -27578010 + Lx9 LINE L1 6970 7643 -1 1 1321 775 237 73 29 chr9 96498173 96498377 -27577795 + B4 SINE B4 80 292 0 1 1321 2208 197 142 27 chr9 96498416 96498901 -27577271 + RLTR20A LTR ERVK 1 541 0 1 1321 408 286 10 0 chr9 96499534 96499632 -27576540 + MIRb SINE MIR 138 236 -32 1 1321 363 106 365 28 chr9 96500185 96500292 -27575880 - B2_Mm2 SINE B2 -5 190 48 1 1321 1220 81 35 0 chr9 96500352 96500525 -27575647 - B2_Mm1t SINE B2 -14 179 1 2 1321 216 0 0 0 chr9 96500578 96500602 -27575570 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 1321 448 185 0 0 chr9 96500884 96500965 -27575207 + MTC LTR MaLR 2 82 -337 4 1321 1386 73 11 0 chr9 96500966 96501143 -27575029 + B2_Mm1t SINE B2 1 179 -14 5 1321 330 81 351 9 chr9 96501171 96501282 -27574890 + B2_Mm2 SINE B2 47 195 0 6 1321 1546 134 150 19 chr9 96501282 96501595 -27574577 + MTC LTR MaLR 68 421 0 4 1321 548 261 15 8 chr9 96501695 96501826 -27574346 - ID_B1 SINE B4 -91 133 2 7 1321 22 35 0 0 chr9 96502118 96502147 -27574025 + AT_rich Low_complexity Low_complexity 1 29 0 8 1321 279 0 0 0 chr9 96502366 96502397 -27573775 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1321 1251 91 11 17 chr9 96502791 96502969 -27573203 + B2_Mm2 SINE B2 2 178 -17 1 1321 639 229 0 0 chr9 96503354 96503476 -27572696 - B1F1 SINE Alu -5 144 23 1 1321 4527 65 7 0 chr9 96504201 96504786 -27571386 - L1_Mus3 LINE L1 -4 6634 6046 1 1321 429 160 17 6 chr9 96505055 96505139 -27571033 + B1_Mur2 SINE Alu 26 144 -5 1 1321 226 197 0 96 chr9 96505339 96505412 -27570760 + L1MB7 LINE L1 6119 6184 0 1 1321 1123 59 0 0 chr9 96505461 96505596 -27570576 - B1_Mus2 SINE Alu -12 135 1 1 1321 28 0 0 0 chr9 96506637 96506665 -27569507 + AT_rich Low_complexity Low_complexity 1 28 0 1 1321 24 0 0 0 chr9 96506989 96507013 -27569159 + AT_rich Low_complexity Low_complexity 1 24 0 1 1321 2938 130 232 2 chr9 96507235 96507796 -27568376 - RMER6C LTR ERVK 0 690 1 1 1321 259 173 0 0 chr9 96507798 96507850 -27568322 - RMER6-int LTR ERVK -3 3174 3123 1 1321 516 291 156 23 chr9 96507925 96508182 -27567990 - B4A SINE B4 -1 291 1 1 1321 873 294 61 11 chr9 96508249 96508321 -27567851 - B4A SINE B4 -6 286 212 2 1321 234 0 0 0 chr9 96508321 96508347 -27567825 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 2 1321 873 294 61 11 chr9 96508347 96508536 -27567636 - B4A SINE B4 -81 211 12 2 1321 535 277 15 0 chr9 96508544 96508674 -27567498 + Lx8 LINE L1 7197 7328 -145 2 1321 318 258 21 21 chr9 96508945 96509040 -27567132 - L1M5 LINE L1 -728 5434 5340 2 1321 539 239 17 0 chr9 96509920 96510037 -27566135 - RSINE1 SINE B4 -28 137 19 2 1321 255 277 60 0 chr9 96510129 96510212 -27565960 + PB1D10 SINE Alu 14 101 -16 2 1321 261 297 0 0 chr9 96510215 96510279 -27565893 + GA-rich Low_complexity Low_complexity 3 66 0 2 1321 204 40 0 0 chr9 96510470 96510495 -27565677 + (GTTTG)n Simple_repeat Simple_repeat 3 27 0 2 1321 668 243 7 7 chr9 96510496 96510645 -27565527 - B1_Mur1 SINE Alu 0 149 1 2 1321 877 272 63 26 chr9 96510829 96511097 -27565075 - B4A SINE B4 -11 281 4 2 1321 323 327 90 24 chr9 96511132 96511298 -27564874 + L3 LINE CR1 4062 4238 -251 3 1321 267 353 62 16 chr9 96511460 96511653 -27564519 + L3 LINE CR1 4286 4487 -2 3 1321 282 272 191 64 chr9 96512284 96512771 -27563401 + L2 LINE L2 1721 2269 -1150 3 1321 228 292 0 89 chr9 96513161 96513240 -27562932 - ID4 SINE ID -4 79 8 3 1321 887 176 13 13 chr9 96513961 96514111 -27562061 + B1_Mur4 SINE Alu 1 150 0 3 1321 315 155 56 14 chr9 96514168 96514240 -27561932 + B1F2 SINE Alu 2 76 -73 3 1321 393 149 0 0 chr9 96514398 96514465 -27561707 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1321 408 289 12 0 chr9 96515470 96515580 -27560592 + B1_Mus2 SINE Alu 3 115 -5 3 1321 1132 62 0 20 chr9 96515843 96515991 -27560181 + B1_Mus2 SINE Alu 2 146 -1 3 1321 243 0 19 113 chr9 96515992 96516045 -27560127 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1321 324 0 0 0 chr9 96516227 96516263 -27559909 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1321 277 266 181 0 chr9 96516272 96516366 -27559806 - ID_B1 SINE B4 -3 221 111 4 1321 25 0 0 0 chr9 96516392 96516417 -27559755 + AT_rich Low_complexity Low_complexity 1 25 0 4 1321 795 307 9 44 chr9 96516597 96516825 -27559347 - B4A SINE B4 -70 222 3 4 1321 196 259 52 0 chr9 96517048 96517106 -27559066 - MIRc SINE MIR -42 226 166 4 1321 378 0 0 0 chr9 96517382 96517424 -27558748 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4 1321 3307 11 0 0 chr9 96517583 96517953 -27558219 + L1Md_T LINE L1 6213 6582 0 4 1321 260 129 0 46 chr9 96518026 96518091 -27558081 + A-rich Low_complexity Low_complexity 1 62 0 4 1321 562 279 94 25 chr9 96518566 96518768 -27557404 + B3 SINE B2 1 216 0 4 1321 282 250 189 27 chr9 96519042 96519153 -27557019 + MIRb SINE MIR 125 253 -15 4 1321 245 148 126 74 chr9 96519816 96519910 -27556262 + PB1D9 SINE Alu 12 118 -2 4 1321 374 167 12 0 chr9 96519927 96520011 -27556161 + GA-rich Low_complexity Low_complexity 2 86 0 5 1321 189 107 0 0 chr9 96520861 96520889 -27555283 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1321 22 35 0 0 chr9 96521194 96521223 -27554949 + AT_rich Low_complexity Low_complexity 1 29 0 5 1321 251 271 0 0 chr9 96521278 96521337 -27554835 + tRNA-Ala-GCA tRNA tRNA 6 64 -11 5 1321 248 338 12 12 chr9 96521337 96521349 -27554823 + ID4 SINE ID 33 81 -2 5 1321 260 278 137 13 chr9 96521390 96521543 -27554629 - L1MC4a LINE L1 -1965 5917 5746 5 1321 345 295 0 74 chr9 96521931 96522052 -27554120 + PB1D10 SINE Alu 3 114 -3 5 1321 698 164 98 30 chr9 96522058 96522190 -27553982 + B1_Mus1 SINE Alu 1 141 -7 5 1321 501 80 0 0 chr9 96522190 96522265 -27553907 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1321 364 284 71 0 chr9 96522351 96522478 -27553694 + L1MC LINE L1 5659 5794 -2088 5 1321 3408 145 21 9 chr9 96523564 96524134 -27552038 - Lx LINE L1 -845 5038 4462 6 1321 7021 101 54 10 chr9 96524135 96525686 -27550486 + Lx LINE L1 5040 6639 -15 6 1321 1406 69 26 16 chr9 96525704 96525895 -27550277 + B2_Mm2 SINE B2 2 194 -1 6 1321 798 169 0 0 chr9 96525984 96526120 -27550052 - B1_Mus1 SINE Alu -12 136 1 6 1321 926 244 83 36 chr9 96526153 96526430 -27549742 + B4 SINE B4 1 290 -2 6 1321 378 0 0 0 chr9 96526446 96526488 -27549684 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1321 1202 28 14 0 chr9 96526542 96526687 -27549485 + B1_Mus2 SINE Alu 1 147 0 6 1321 287 25 25 0 chr9 96528969 96529009 -27547163 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1321 447 246 120 99 chr9 96529040 96529100 -27547072 - B4A SINE B4 0 292 234 6 1321 180 0 0 0 chr9 96529100 96529120 -27547052 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 1321 447 246 120 99 chr9 96529120 96529343 -27546829 - B4A SINE B4 -59 233 3 6 1321 243 61 0 0 chr9 96530074 96530107 -27546065 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1321 231 61 0 0 chr9 96531340 96531373 -27544799 + (CCCGG)n Simple_repeat Simple_repeat 4 36 0 7 1321 27 0 0 0 chr9 96531496 96531523 -27544649 + GC_rich Low_complexity Low_complexity 1 27 0 7 1321 33 73 0 0 chr9 96531689 96531757 -27544415 + GC_rich Low_complexity Low_complexity 1 68 0 7 1321 233 217 23 35 chr9 96531994 96532080 -27544092 + (CCTCG)n Simple_repeat Simple_repeat 2 86 0 7 1321 367 305 34 0 chr9 96533351 96533469 -27542703 - RSINE1 SINE B4 -39 126 5 7 1321 278 344 11 0 chr9 96533495 96533585 -27542587 - RMER15 LTR ERVL -114 461 371 7 1321 2634 269 93 53 chr9 96533592 96533720 -27542452 - Lx8 LINE L1 -253 7220 7084 7 1321 802 173 144 11 chr9 96533720 96533907 -27542265 + B3 SINE B2 3 214 -2 7 1321 2634 269 93 53 chr9 96533907 96534872 -27541300 - Lx8 LINE L1 -390 7083 6083 7 1321 799 141 78 50 chr9 96535151 96535330 -27540842 + B2_Mm2 SINE B2 1 184 -11 7 1321 234 91 0 0 chr9 96535361 96535394 -27540778 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1321 1659 250 95 68 chr9 96535394 96535476 -27540696 - Lx8 LINE L1 -35 7438 7361 8 1321 477 0 0 0 chr9 96535476 96535529 -27540643 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1321 1659 250 95 68 chr9 96535529 96536067 -27540105 - Lx8 LINE L1 -113 7360 6801 8 1321 246 81 0 0 chr9 96536328 96536365 -27539807 + (CAA)n Simple_repeat Simple_repeat 1 37 0 8 1321 617 221 79 0 chr9 96536571 96536698 -27539474 + B1_Mur1 SINE Alu 1 137 -12 8 1321 618 79 0 0 chr9 96536699 96536788 -27539384 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 8 1321 650 13 0 12 chr9 96536788 96536867 -27539305 + (GAGAA)n Simple_repeat Simple_repeat 2 80 0 8 1321 248 49 49 0 chr9 96537260 96537301 -27538871 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 8 1321 31 44 0 0 chr9 96538104 96538149 -27538023 + AT_rich Low_complexity Low_complexity 1 45 0 8 1321 831 217 14 81 chr9 96538149 96538370 -27537802 - B3 SINE B2 -10 206 1 8 1321 454 205 3 26 chr9 96538372 96538489 -27537683 - PB1D9 SINE Alu 0 120 5 8 1321 854 132 72 7 chr9 96539541 96539694 -27536478 + B3 SINE B2 1 163 -53 9 1321 240 35 0 0 chr9 96540323 96540352 -27535820 + (CGGGG)n Simple_repeat Simple_repeat 3 31 0 9 1321 524 295 65 39 chr9 96541711 96541990 -27534182 - B4A SINE B4 -6 286 1 9 1321 1363 73 17 6 chr9 96542033 96542211 -27533961 - B2_Mm2 SINE B2 -15 180 1 9 1321 389 270 202 4 chr9 96542354 96542592 -27533580 - L1MC4 LINE L1 -181 7861 7577 9 1321 314 190 25 25 chr9 96542607 96542688 -27533484 - Lx7 LINE L1 0 7696 7616 9 1321 426 39 0 0 chr9 96542693 96542745 -27533427 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1321 3291 219 32 127 chr9 96542815 96543769 -27532403 - Lx7 LINE L1 -419 7277 6414 9 1321 1025 262 136 31 chr9 96544405 96544697 -27531475 + L1MB3 LINE L1 5586 5898 -285 9 1321 1435 29 47 0 chr9 96544697 96544869 -27531303 + B2_Mm2 SINE B2 1 180 -15 9 1321 291 28 0 0 chr9 96544871 96544907 -27531265 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 9 1321 1025 262 136 31 chr9 96544907 96545119 -27531053 + L1MB3 LINE L1 5899 6144 -39 9 1321 781 228 143 0 chr9 96545136 96545325 -27530847 - B3 SINE B2 0 216 1 1 1321 558 0 0 0 chr9 96547216 96547278 -27528894 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1321 268 279 23 76 chr9 96548190 96548322 -27527850 + B4A SINE B4 59 183 -109 1 1321 218 56 28 0 chr9 96548378 96548414 -27527758 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1321 954 152 7 0 chr9 96548504 96548649 -27527523 - B1_Mus2 SINE Alu -1 146 1 1 1321 349 264 56 8 chr9 96548742 96548868 -27527304 + RSINE1 SINE B4 3 134 -31 1 1321 25 31 0 0 chr9 96548931 96548963 -27527209 + AT_rich Low_complexity Low_complexity 1 32 0 1 1321 398 312 62 0 chr9 96549069 96549181 -27526991 - MER20 DNA MER1_type -47 172 54 1 1321 620 271 7 0 chr9 96549279 96549434 -27526738 + ID_B1 SINE B4 58 213 -11 1 1321 236 280 0 13 chr9 96550049 96550125 -27526047 - MamGypLTR2 LTR Gypsy -3 1186 1112 1 1321 234 0 0 0 chr9 96551094 96551120 -27525052 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1321 280 244 85 54 chr9 96551167 96551297 -27524875 - LTR81A LTR ERV1? -1199 151 18 1 1321 947 145 206 6 chr9 96551764 96551944 -27524228 + B3 SINE B2 1 216 0 1 1321 321 248 202 61 chr9 96551984 96552212 -27523960 + B4A SINE B4 3 262 -30 1 1321 312 27 0 0 chr9 96552215 96552252 -27523920 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1321 286 231 10 52 chr9 96552252 96552348 -27523824 + (TATATG)n Simple_repeat Simple_repeat 1 92 0 1 1321 21 0 0 0 chr9 96553250 96553271 -27522901 + AT_rich Low_complexity Low_complexity 1 21 0 1 1321 264 171 0 40 chr9 96553482 96553538 -27522634 + L1_Mus4 LINE L1 5980 6033 -603 1 1321 406 208 0 14 chr9 96554350 96554423 -27521749 - ID4 SINE ID -10 73 2 1 1321 441 0 0 0 chr9 96554431 96554480 -27521692 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1321 261 0 0 0 chr9 96554480 96554508 -27521664 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1321 575 187 35 9 chr9 96554577 96554690 -27521482 - B1_Mus2 SINE Alu -31 116 1 1 1321 1083 259 128 11 chr9 96554913 96555273 -27520899 + MTD LTR MaLR 18 419 0 1 1321 886 168 7 0 chr9 96555442 96555585 -27520587 - B1_Mur2 SINE Alu -5 144 1 1 1321 7810 78 13 18 chr9 96555744 96556889 -27519283 + L1_Mus4 LINE L1 5497 6635 -1 1 1321 249 71 0 79 chr9 96556969 96557045 -27519127 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1321 358 189 0 75 chr9 96557257 96557268 -27518904 + B4 SINE B4 80 84 -208 1 1321 485 212 0 0 chr9 96557268 96557353 -27518819 + B1_Mur4 SINE Alu 1 85 -65 1 1321 1247 303 98 4 chr9 96557418 96558035 -27518137 - RMER1C Other Other -463 879 65 1 1321 210 143 0 0 chr9 96558172 96558207 -27517965 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1321 242 333 0 118 chr9 96558249 96558351 -27517821 - RSINE1 SINE B4 0 165 76 1 1321 295 303 0 0 chr9 96558655 96558731 -27517441 - B4A SINE B4 -216 76 1 1 1321 722 309 90 13 chr9 96558979 96559375 -27516797 - L1M4 LINE L1 -398 5780 5347 1 1321 477 314 8 17 chr9 96559401 96559521 -27516651 + B4A SINE B4 72 190 -102 1 1321 213 271 88 53 chr9 96559422 96559535 -27516637 + B1F SINE Alu 6 122 -27 1 1321 408 279 47 47 chr9 96559752 96559880 -27516292 + B4A SINE B4 161 288 -4 1 1321 227 169 50 17 chr9 96559947 96560007 -27516165 - L1M4 LINE L1 -844 5320 5259 1 1321 2865 115 16 94 chr9 96560044 96560544 -27515628 + RMER6B LTR ERVK 1 461 0 1 1321 1874 127 66 77 chr9 96561605 96561955 -27514217 - ORR1B1 LTR MaLR -8 386 41 1 1321 29 28 0 0 chr9 96562948 96562984 -27513188 + AT_rich Low_complexity Low_complexity 1 36 0 1 1321 729 249 129 60 chr9 96563000 96563176 -27512996 - B3 SINE B2 0 216 21 1 1321 1749 177 10 94 chr9 96563176 96563581 -27512591 + ORR1D1 LTR MaLR 2 372 -2 1 1321 729 249 129 60 chr9 96563581 96563605 -27512567 - B3 SINE B2 -196 20 2 1 1321 758 209 37 0 chr9 96563612 96563746 -27512426 - B1_Mur1 SINE Alu -8 141 3 1 1321 1502 138 0 9 chr9 96564009 96564236 -27511936 + URR1A DNA MER1_type 2 226 0 1 1321 267 331 111 35 chr9 96564268 96564369 -27511803 - MT2A LTR ERVL -178 355 247 1 1321 198 0 0 0 chr9 96564369 96564391 -27511781 + (CAG)n Simple_repeat Simple_repeat 2 23 0 1 1321 267 331 111 35 chr9 96564391 96564433 -27511739 - MT2A LTR ERVL -287 246 201 1 1321 373 288 79 8 chr9 96564474 96564600 -27511572 - MTE2a LTR MaLR -242 137 3 1 1321 938 113 31 12 chr9 96564894 96565055 -27511117 - RLTR10 LTR ERVK 0 390 227 1 1321 240 105 0 66 chr9 96565166 96565227 -27510945 - RLTR10 LTR ERVK -72 318 262 1 1321 2528 45 3 21 chr9 96565229 96565566 -27510606 - RLTR10 LTR ERVK -59 331 1 1 1321 8903 24 1 1 chr9 96565568 96566563 -27509609 - RLTR10-int LTR ERVK -3 1984 990 1 1321 376 271 31 8 chr9 96566645 96566775 -27509397 - RLTR10-int LTR ERVK -5987 1594 1462 1 1321 8030 41 8 5 chr9 96566839 96567794 -27508378 - RLTR10-int LTR ERVK -989 998 41 1 1321 904 132 19 12 chr9 96567806 96567967 -27508205 - RLTR10 LTR ERVK -2 388 227 1 1321 2528 45 3 21 chr9 96568105 96568442 -27507730 - RLTR10 LTR ERVK -59 331 1 1 1321 643 206 38 70 chr9 96569479 96569662 -27506510 + B3A SINE B2 36 211 -5 1 1321 395 291 33 41 chr9 96569692 96569814 -27506358 + RSINE1 SINE B4 45 165 0 1 1321 306 172 322 0 chr9 96569910 96569997 -27506175 - B1_Mus2 SINE Alu -27 120 6 1 1321 1196 68 0 0 chr9 96571122 96571269 -27504903 + B1_Mus2 SINE Alu 1 147 0 1 1321 297 0 0 0 chr9 96571288 96571321 -27504851 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1321 1636 171 158 15 chr9 96572121 96572253 -27503919 - Lx9 LINE L1 -11 7633 7455 1 1321 414 0 0 0 chr9 96572253 96572299 -27503873 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1321 1636 171 158 15 chr9 96572299 96572559 -27503613 - Lx9 LINE L1 -190 7454 7186 1 1321 214 290 91 61 chr9 96572559 96572595 -27503577 - PB1D9 SINE Alu -12 108 7 1 1321 238 270 95 0 chr9 96572595 96572658 -27503514 - ID_B1 SINE B4 -68 156 88 1 1321 682 176 87 16 chr9 96572678 96572805 -27503367 - B1_Mur1 SINE Alu -5 144 9 1 1321 302 252 109 109 chr9 96572681 96572813 -27503359 - B4A SINE B4 -73 219 87 1 1321 357 82 0 0 chr9 96572813 96572862 -27503310 + (CAT)n Simple_repeat Simple_repeat 3 51 0 1 1321 302 252 109 109 chr9 96572862 96572876 -27503296 - B4A SINE B4 -206 86 73 1 1321 627 222 167 33 chr9 96572908 96573231 -27502941 - MTC LTR MaLR -14 405 1 1 1321 355 286 229 37 chr9 96573790 96574078 -27502094 + MTEb LTR MaLR 1 372 -7 1 1321 257 301 14 0 chr9 96574909 96574982 -27501190 + MER81 DNA AcHobo 36 109 -5 1 1321 345 294 49 0 chr9 96575816 96575918 -27500254 - Zaphod DNA Tip100 -30 4001 3895 1 1321 283 356 73 31 chr9 96576267 96576554 -27499618 + L2 LINE L2 2500 2798 -621 1 1321 439 232 60 10 chr9 96576562 96576662 -27499510 - B1F2 SINE Alu -5 144 40 1 1321 283 179 143 0 chr9 96576704 96576760 -27499412 - ID4_ SINE ID -17 66 3 1 1321 867 179 228 0 chr9 96577025 96577209 -27498963 - URR1A DNA MER1_type 0 226 1 1 1321 646 255 47 17 chr9 96577780 96577980 -27498192 - B3A SINE B2 -5 211 8 1 1321 1521 42 16 10 chr9 96578128 96578320 -27497852 - B2_Mm1t SINE B2 0 193 1 1 1321 581 283 62 6 chr9 96578687 96578847 -27497325 - B4A SINE B4 -22 270 102 1 1321 2488 142 33 7 chr9 96578863 96579288 -27496884 + Lx5 LINE L1 5663 6098 -952 1 1321 1023 133 75 6 chr9 96579292 96579466 -27496706 - ORR1B1 LTR MaLR -8 386 201 1 1321 390 253 24 0 chr9 96579474 96579557 -27496615 - B4A SINE B4 -204 88 4 1 1321 1341 144 0 46 chr9 96579596 96579815 -27496357 - B3 SINE B2 -7 209 1 1 1321 231 292 149 51 chr9 96579984 96580179 -27495993 + L2 LINE L2 2635 2848 -571 1 1321 224 30 30 0 chr9 96580454 96580487 -27495685 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1321 1191 61 0 13 chr9 96580490 96580639 -27495533 - B1_Mus2 SINE Alu 0 147 1 1 1321 245 73 0 0 chr9 96580764 96580805 -27495367 + RMER4A LTR ERVK 420 460 -6 1 1321 307 89 22 22 chr9 96580808 96580854 -27495318 - HAL1-3A_ME LINE L1 -845 2013 1968 1 1321 463 262 80 7 chr9 96580866 96581016 -27495156 - RSINE1 SINE B4 0 165 5 1 1321 860 158 21 28 chr9 96581449 96581592 -27494580 - B1_Mur3 SINE Alu -7 142 1 1 1321 220 306 70 61 chr9 96581757 96581851 -27494321 - MamSINE1 SINE tRNA -79 211 119 1 1321 2255 47 148 10 chr9 96581851 96582155 -27494017 + ORR1A1 LTR MaLR 1 346 0 1 1321 220 306 70 61 chr9 96582155 96582175 -27493997 - MamSINE1 SINE tRNA -172 118 97 1 1321 1240 148 98 0 chr9 96582337 96582540 -27493632 + URR1B DNA MER1_type 3 225 0 1 1321 650 188 45 0 chr9 96582903 96583015 -27493157 - B1_Mur1 SINE Alu -30 119 3 1 1321 21 0 0 0 chr9 96583753 96583774 -27492398 + AT_rich Low_complexity Low_complexity 1 21 0 1 1321 44 0 0 0 chr9 96584075 96584119 -27492053 + AT_rich Low_complexity Low_complexity 1 44 0 1 1321 319 315 0 43 chr9 96585733 96585826 -27490346 + L1MEg LINE L1 1860 1948 -4136 1 1321 207 0 0 0 chr9 96586521 96586544 -27489628 + (TTC)n Simple_repeat Simple_repeat 1 23 0 1 1321 481 272 17 26 chr9 96589851 96589968 -27486204 - B1_Mur1 SINE Alu -1 148 33 1 1321 596 233 8 8 chr9 96590023 96590140 -27486032 - B1_Mur1 SINE Alu -32 117 1 1 1321 352 299 45 52 chr9 96590025 96590159 -27486013 - B4A SINE B4 -88 204 72 1 1321 258 267 26 13 chr9 96590190 96590266 -27485906 - ID4_ SINE ID -6 77 1 1 1321 275 319 117 83 chr9 96590878 96591083 -27485089 - MTEa LTR MaLR -164 215 4 1 1321 1127 203 0 32 chr9 96591493 96591712 -27484460 + B3 SINE B2 1 212 -4 1 1321 399 41 0 0 chr9 96591802 96591851 -27484321 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1321 497 261 20 40 chr9 96591860 96592008 -27484164 - RSINE1 SINE B4 -19 146 2 1 1321 846 189 21 0 chr9 96592053 96592196 -27483976 + B1_Mur4 SINE Alu 5 150 0 1 1321 310 318 76 71 chr9 96592203 96592237 -27483935 + L1MEg LINE L1 1882 1915 -4169 2 1321 1297 27 0 0 chr9 96592237 96592384 -27483788 + B1_Mm SINE Alu 1 147 0 2 1321 310 318 76 71 chr9 96592384 96592559 -27483613 + L1MEg LINE L1 1916 2092 -3992 2 1321 304 258 115 16 chr9 96592560 96592682 -27483490 - MER94 DNA AcHobo 0 134 1 2 1321 325 298 0 123 chr9 96592871 96592935 -27483237 + B4A SINE B4 31 78 -214 2 1321 485 239 14 25 chr9 96592935 96593070 -27483102 + PB1D10 SINE Alu 2 126 -22 2 1321 379 301 189 6 chr9 96593182 96593346 -27482826 - B4A SINE B4 -2 290 97 2 1321 269 333 39 0 chr9 96593963 96594041 -27482131 + Charlie1 DNA MER1_type 2 82 -2699 2 1321 257 312 13 102 chr9 96594133 96594258 -27481914 + Charlie1 DNA MER1_type 1612 1722 -1059 2 1321 959 63 112 0 chr9 96594258 96594401 -27481771 + B2_Mm2 SINE B2 4 162 -33 2 1321 180 0 0 0 chr9 96594401 96594421 -27481751 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1321 867 275 120 23 chr9 96594489 96594931 -27481241 + Charlie1 DNA MER1_type 2256 2740 -41 2 1321 1001 231 45 12 chr9 96594942 96595187 -27480985 + RLTR31_Mm LTR ERVK 1 253 -308 2 1321 697 255 7 13 chr9 96595099 96595250 -27480922 + B3 SINE B2 63 212 -4 2 1321 200 328 0 0 chr9 96596018 96596079 -27480093 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1321 191 113 48 16 chr9 96596091 96596154 -27480018 + T-rich Low_complexity Low_complexity 2 66 0 2 1321 554 284 156 10 chr9 96596157 96596349 -27479823 - B4A SINE B4 -72 220 1 2 1321 189 0 0 0 chr9 96597925 96597946 -27478226 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1321 249 319 0 14 chr9 96598499 96598572 -27477600 + ORR1E LTR MaLR 1 72 -287 2 1321 383 286 65 30 chr9 96598905 96599118 -27477054 - MER44B DNA MER2_type -94 456 293 2 1321 301 235 86 29 chr9 96599290 96599430 -27476742 + B1F SINE Alu 2 149 0 2 1321 259 319 88 0 chr9 96599576 96599689 -27476483 + L2a LINE L2 3304 3426 0 2 1321 727 191 39 78 chr9 96599806 96600011 -27476161 - B3A SINE B2 -1 197 1 2 165 212 301 71 33 chr9 96600024 96600167 -27476005 - MIRb SINE MIR -6 262 121 2 1322 246 62 0 0 chr9 96600853 96600885 -27475287 + (GGGAGA)n Simple_repeat Simple_repeat 5 36 0 2 1322 308 280 90 90 chr9 96601653 96601865 -27474307 - MTEb LTR MaLR -23 356 145 2 1322 605 227 0 0 chr9 96602167 96602277 -27473895 + PB1D9 SINE Alu 2 111 -9 2 1322 466 335 47 42 chr9 96603166 96603381 -27472791 - B4A SINE B4 -76 216 1 2 1322 196 270 228 10 chr9 96603393 96603494 -27472678 - MIRb SINE MIR -120 148 26 2 1322 1003 225 34 0 chr9 96603549 96603758 -27472414 + B3 SINE B2 1 216 0 2 1322 1357 87 27 0 chr9 96604784 96604969 -27471203 - B2_Mm2 SINE B2 -5 190 1 2 1322 350 179 20 60 chr9 96605072 96605221 -27470951 + (TA)n Simple_repeat Simple_repeat 2 144 0 2 1322 222 118 0 0 chr9 96605752 96605786 -27470386 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 2 1322 193 371 48 0 chr9 96607274 96607379 -27468793 - MIR SINE MIR -123 139 30 2 1322 2878 146 164 35 chr9 96607845 96608386 -27467786 - RMER19C LTR ERVK 0 611 1 2 1322 244 305 112 45 chr9 96609343 96609477 -27466695 - MLT1D LTR MaLR -357 148 6 2 1322 264 295 0 0 chr9 96610795 96610856 -27465316 - MIRb SINE MIR -6 262 202 2 1322 806 239 28 0 chr9 96611542 96611718 -27464454 + B3A SINE B2 1 181 -17 2 1322 2121 149 121 12 chr9 96611882 96612302 -27463870 - RMER4A LTR ERVK 0 466 1 2 1322 280 282 127 57 chr9 96613322 96613480 -27462692 + ID_B1 SINE B4 53 221 -3 2 1322 370 222 16 143 chr9 96613355 96613481 -27462691 + PB1D10 SINE Alu 4 113 -4 2 1322 231 114 0 0 chr9 96613565 96613600 -27462572 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1322 188 293 130 61 chr9 96613886 96614017 -27462155 - L3 LINE CR1 -57 4432 4293 2 1322 332 278 76 112 chr9 96614072 96614295 -27461877 + L1MD LINE L1 3131 3345 -2801 2 1322 421 234 96 0 chr9 96614955 96615049 -27461123 - B3A SINE B2 -74 124 22 2 1322 249 109 0 0 chr9 96616649 96616695 -27459477 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1322 205 261 61 111 chr9 96617813 96617843 -27458329 + MIRb SINE MIR 167 194 -74 2 1322 1171 64 121 6 chr9 96617843 96618017 -27458155 - B2_Mm2 SINE B2 -1 194 1 2 1322 205 261 61 111 chr9 96618017 96618085 -27458087 + MIRb SINE MIR 195 260 -8 2 1322 194 267 179 8 chr9 96618968 96619085 -27457087 - MIRb SINE MIR -79 189 53 2 1322 259 264 153 67 chr9 96619205 96619355 -27456817 - MER112 DNA MER1_type -98 163 1 2 1322 279 277 142 9 chr9 96619362 96619475 -27456697 + B1F SINE Alu 21 148 -1 2 1322 333 0 0 0 chr9 96620765 96620802 -27455370 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1322 432 257 173 98 chr9 96621062 96621368 -27454804 - Charlie19a DNA Charlie -1 385 57 2 1322 324 301 138 51 chr9 96621462 96621658 -27454514 + MIRb SINE MIR 34 246 -22 2 1322 423 0 0 0 chr9 96622791 96622838 -27453334 + (TCCC)n Simple_repeat Simple_repeat 1 47 0 2 1322 27 0 0 0 chr9 96622916 96622943 -27453229 + AT_rich Low_complexity Low_complexity 1 27 0 2 1322 419 225 0 0 chr9 96623072 96623143 -27453029 + RSINE1 SINE B4 2 72 -93 2 1322 252 0 0 0 chr9 96623185 96623213 -27452959 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1322 490 234 0 0 chr9 96623304 96623398 -27452774 + PB1D10 SINE Alu 19 112 -5 2 1322 264 41 39 39 chr9 96623400 96623451 -27452721 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 2 1322 470 268 77 6 chr9 96623571 96623740 -27452432 - B3A SINE B2 -16 182 2 2 1322 303 221 103 11 chr9 96623744 96623831 -27452341 + Cheshire DNA MER1_type 81 175 -2245 2 1322 278 269 47 19 chr9 96623868 96623974 -27452198 + Cheshire DNA MER1_type 2242 2350 -70 2 1322 684 224 42 0 chr9 96623996 96624139 -27452033 - B1_Mur1 SINE Alu 0 149 1 2 1322 337 261 71 0 chr9 96624533 96624617 -27451555 - ID4_ SINE ID -58 94 5 2 1322 207 100 0 0 chr9 96624622 96624652 -27451520 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1322 346 187 11 11 chr9 96625046 96625138 -27451034 + GA-rich Low_complexity Low_complexity 2 93 0 2 1322 709 215 35 0 chr9 96625756 96625900 -27450272 - B1_Mur1 SINE Alu 0 149 1 2 1322 225 0 0 0 chr9 96626925 96626950 -27449222 + (CAG)n Simple_repeat Simple_repeat 2 26 0 2 1322 312 179 219 10 chr9 96628658 96628754 -27447418 - PB1D9 SINE Alu -4 116 1 2 1322 24 32 0 0 chr9 96633058 96633089 -27443083 + AT_rich Low_complexity Low_complexity 1 31 0 2 1322 294 125 0 0 chr9 96633952 96634000 -27442172 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1322 2080 172 58 38 chr9 96635022 96635474 -27440698 - RMER4A LTR ERVK 0 466 6 2 1322 1225 110 125 39 chr9 96635761 96635969 -27440203 - URR1A DNA MER1_type 0 226 1 2 1322 21 0 0 0 chr9 96636662 96636683 -27439489 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 867 177 0 0 chr9 96636974 96637138 -27439034 + CT-rich Low_complexity Low_complexity 1 164 0 2 1322 631 241 44 0 chr9 96637138 96637275 -27438897 - B1_Mur1 SINE Alu -1 148 6 2 1322 1211 193 0 5 chr9 96637310 96637513 -27438659 + B3 SINE B2 1 202 -14 2 1322 857 289 61 56 chr9 96637653 96638014 -27438158 + BGLII_B LTR ERVK 92 493 -35 2 1322 198 0 0 0 chr9 96638028 96638050 -27438122 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1322 224 195 0 0 chr9 96638175 96638216 -27437956 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1322 222 37 0 0 chr9 96638601 96638628 -27437544 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1322 759 52 0 0 chr9 96638808 96638904 -27437268 + (TC)n Simple_repeat Simple_repeat 1 96 0 2 1322 548 204 29 0 chr9 96638904 96639007 -27437165 - B1_Mur2 SINE Alu -20 129 24 2 1322 387 60 0 0 chr9 96641185 96641235 -27434937 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1322 25 51 0 0 chr9 96642120 96642159 -27434013 + AT_rich Low_complexity Low_complexity 1 39 0 2 1322 239 310 0 0 chr9 96642159 96642217 -27433955 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1322 621 231 59 7 chr9 96642265 96642400 -27433772 - B3A SINE B2 -56 142 1 2 1322 545 272 71 16 chr9 96642402 96642585 -27433587 - B3A SINE B2 -5 193 1 2 1322 324 0 0 0 chr9 96642647 96642683 -27433489 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1322 291 253 145 0 chr9 96642713 96642796 -27433376 + PB1D10 SINE Alu 13 107 -10 2 1322 182 282 36 60 chr9 96642932 96643015 -27433157 + MIRm SINE MIR 131 211 -65 2 1322 589 308 50 81 chr9 96643301 96643495 -27432677 - L1M5 LINE L1 -398 5781 5597 2 1322 1117 52 0 0 chr9 96643495 96643629 -27432543 + B1_Mm SINE Alu 1 134 -13 2 1322 243 0 0 0 chr9 96643632 96643659 -27432513 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1322 589 308 50 81 chr9 96643659 96643820 -27432352 - L1M5 LINE L1 -583 5596 5435 2 1322 180 0 0 0 chr9 96643879 96643899 -27432273 + (CAAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1322 1120 162 44 5 chr9 96644479 96644684 -27431488 + B3 SINE B2 1 213 -3 2 1322 207 0 0 0 chr9 96644694 96644717 -27431455 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1322 794 174 30 0 chr9 96644717 96644849 -27431323 - B1_Mur2 SINE Alu -11 138 3 2 1322 756 154 0 44 chr9 96645304 96645440 -27430732 + B1_Mur3 SINE Alu 12 141 -8 2 1322 406 304 133 102 chr9 96645918 96646302 -27429870 + MLT1A1 LTR MaLR 1 396 -12 2 1322 367 376 67 0 chr9 96646761 96646910 -27429262 + L1ME4a LINE L1 5714 5872 -252 2 1322 296 308 0 0 chr9 96647334 96647412 -27428760 + MTE2a LTR MaLR 4 81 -298 2 1322 1231 296 50 6 chr9 96647415 96647738 -27428434 + MTE2a LTR MaLR 43 379 0 2 1322 225 0 0 0 chr9 96648157 96648182 -27427990 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1322 473 321 55 62 chr9 96649051 96649307 -27426865 + ORR1E LTR MaLR 1 254 -105 3 1322 253 269 38 25 chr9 96649342 96649422 -27426750 + ORR1E LTR MaLR 278 358 -21 3 1322 538 241 44 22 chr9 96650664 96650800 -27425372 - B1F2 SINE Alu -9 140 2 3 1322 864 229 69 10 chr9 96650825 96651028 -27425144 - B3 SINE B2 0 216 2 3 1322 524 289 115 80 chr9 96651175 96651390 -27424782 + MLT1J1 LTR MaLR 76 285 -159 3 1322 238 275 14 14 chr9 96651390 96651460 -27424712 - ID4 SINE ID -11 72 3 3 1322 524 289 115 80 chr9 96651460 96651583 -27424589 + MLT1J1 LTR MaLR 286 426 -18 3 1322 459 113 0 0 chr9 96653703 96653774 -27422398 + (TGAG)n Simple_repeat Simple_repeat 1 71 0 3 1322 305 288 122 50 chr9 96653798 96654002 -27422170 - MIRb SINE MIR -14 254 30 3 1322 888 61 0 0 chr9 96655289 96655404 -27420768 + (GA)n Simple_repeat Simple_repeat 1 115 0 3 1322 779 284 99 48 chr9 96655622 96656036 -27420136 - L1MB8 LINE L1 -16 6162 5728 3 1322 383 238 0 36 chr9 96656037 96656120 -27420052 - ID4 SINE ID 0 83 4 3 1322 310 221 43 14 chr9 96656146 96656215 -27419957 - PB1D10 SINE Alu -29 88 18 3 1322 303 171 10 137 chr9 96656215 96656240 -27419932 - MT2B2 LTR ERVL -333 232 163 3 1322 303 307 69 0 chr9 96656354 96656455 -27419717 - ORR1E LTR MaLR 0 379 272 3 1322 685 279 86 132 chr9 96656529 96656644 -27419528 + B4A SINE B4 1 86 -206 3 1322 909 0 0 0 chr9 96656644 96656745 -27419427 + (CAAAG)n Simple_repeat Simple_repeat 4 104 0 3 1322 685 279 86 132 chr9 96656745 96656931 -27419241 + B4A SINE B4 87 288 -4 3 1322 204 125 0 0 chr9 96656947 96656979 -27419193 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1322 527 301 20 0 chr9 96657078 96657224 -27418948 - ORR1E LTR MaLR -210 149 1 3 1322 484 258 134 133 chr9 96657226 96657660 -27418512 - L1MB8 LINE L1 -557 5627 5221 3 1322 289 287 281 0 chr9 96657660 96657827 -27418345 - B3 SINE B2 -1 215 2 3 1322 405 289 91 155 chr9 96657827 96657861 -27418311 - L1MB8 LINE L1 -926 5220 5204 3 1322 520 251 50 70 chr9 96657861 96658062 -27418110 - B3A SINE B2 -1 197 1 3 1322 405 289 91 155 chr9 96658062 96658359 -27417813 - L1MB8 LINE L1 -943 5203 4892 3 1322 362 102 0 33 chr9 96658400 96658461 -27417711 + B1_Mus1 SINE Alu 2 60 -88 3 1322 834 65 0 0 chr9 96658512 96658619 -27417553 + B1_Mus2 SINE Alu 41 147 0 3 1322 294 302 113 45 chr9 96658619 96658689 -27417483 + MT2B2 LTR ERVL 198 386 -198 3 1322 219 282 12 37 chr9 96658826 96658907 -27417265 + GA-rich Low_complexity Low_complexity 2 80 0 3 1322 218 355 8 76 chr9 96659179 96659298 -27416874 + MIRm SINE MIR 37 147 -129 3 1322 240 286 24 12 chr9 96659298 96659383 -27416789 - MIR SINE MIR -91 117 32 3 1322 235 258 0 0 chr9 96659939 96660001 -27416171 + C-rich Low_complexity Low_complexity 1 62 0 3 1322 1183 55 0 20 chr9 96660082 96660231 -27415941 + B1_Mus2 SINE Alu 2 147 0 3 1322 529 271 0 83 chr9 96660441 96660586 -27415586 + B1F SINE Alu 17 149 0 3 1322 1208 169 9 14 chr9 96660732 96660948 -27415224 - B3 SINE B2 0 216 2 3 1322 294 328 88 38 chr9 96661346 96661584 -27414588 + MIR SINE MIR 12 261 -1 3 1322 1612 26 16 0 chr9 96661614 96661804 -27414368 + B2_Mm1t SINE B2 1 193 0 3 1322 665 260 28 56 chr9 96662738 96662987 -27413185 + L1MB8 LINE L1 5922 6163 -15 3 1322 214 235 0 29 chr9 96662997 96663067 -27413105 + T-rich Low_complexity Low_complexity 6 73 0 3 1322 982 252 75 48 chr9 96663076 96663368 -27412804 - ORR1D2 LTR MaLR -65 305 6 3 1322 518 145 0 0 chr9 96663373 96663449 -27412723 - ORR1D2-int LTR MaLR 0 1370 1295 3 1322 1135 224 56 33 chr9 96663449 96663786 -27412386 + RLTR15 LTR ERVK 1 345 -14 3 1322 252 0 0 0 chr9 96664643 96664671 -27411501 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1322 974 282 52 37 chr9 96665205 96665607 -27410565 + MLT1A1 LTR MaLR 1 408 0 3 1322 198 118 0 0 chr9 96665625 96665659 -27410513 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1322 1722 212 41 86 chr9 96665786 96666203 -27409969 + MTD LTR MaLR 8 405 -14 3 1322 378 0 0 0 chr9 96666743 96666785 -27409387 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1322 946 201 285 155 chr9 96666851 96667108 -27409064 - MT2A LTR ERVL 0 533 162 3 1322 617 56 11 0 chr9 96667108 96667198 -27408974 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 3 1322 946 201 285 155 chr9 96667198 96667258 -27408914 - MT2A LTR ERVL -372 161 158 3 1322 324 0 0 0 chr9 96667258 96667294 -27408878 + (CTAG)n Simple_repeat Simple_repeat 2 37 0 3 1322 946 201 285 155 chr9 96667294 96667445 -27408727 - MT2A LTR ERVL -376 157 3 3 1322 707 181 294 0 chr9 96667446 96667606 -27408566 + B3 SINE B2 1 207 -9 3 1322 189 107 0 0 chr9 96667788 96667816 -27408356 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1322 783 265 68 25 chr9 96667821 96668057 -27408115 - B4A SINE B4 -6 286 41 3 1322 1534 210 32 95 chr9 96668053 96668432 -27407740 - ORR1D1 LTR MaLR -19 355 1 3 1322 417 58 43 0 chr9 96668503 96668572 -27407600 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 1322 231 88 0 0 chr9 96668903 96668937 -27407235 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1322 380 291 109 84 chr9 96668950 96669224 -27406948 - B4A SINE B4 -11 281 1 3 1322 336 324 131 31 chr9 96669257 96669448 -27406724 - HAL1 LINE L1 -1455 1052 843 3 1322 24 0 0 0 chr9 96669452 96669476 -27406696 + AT_rich Low_complexity Low_complexity 1 24 0 3 1322 1390 79 0 26 chr9 96669480 96669674 -27406498 + B2_Mm2 SINE B2 1 189 -6 3 1322 1052 218 19 0 chr9 96669676 96669887 -27406285 - B3 SINE B2 0 216 2 3 1322 1422 147 5 9 chr9 96669892 96670112 -27406060 - URR1B DNA MER1_type -6 219 1 3 1322 287 160 60 0 chr9 96672075 96672125 -27404047 + 5S rRNA rRNA 1 53 -68 3 1322 255 337 39 66 chr9 96672904 96673085 -27403087 - LTR33A LTR ERVL -344 176 1 3 1322 399 110 48 12 chr9 96673520 96673603 -27402569 + CT-rich Low_complexity Low_complexity 4 89 0 3 1322 969 246 56 17 chr9 96674520 96674822 -27401350 - L1M4 LINE L1 -495 5689 5376 3 1322 295 283 170 61 chr9 96674845 96674899 -27401273 - RSINE1 SINE B4 0 165 100 3 1322 270 0 0 0 chr9 96674899 96674929 -27401243 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1322 295 283 170 61 chr9 96674929 96675021 -27401151 - RSINE1 SINE B4 -66 99 3 3 1322 498 224 166 32 chr9 96675023 96675180 -27400992 - L1M4 LINE L1 -774 5372 5195 3 1322 1374 128 60 74 chr9 96675202 96675488 -27400684 - ORR1C1 LTR MaLR -138 240 1 3 1322 761 257 65 19 chr9 96675741 96676003 -27400169 + B4A SINE B4 1 274 -18 3 1322 354 143 0 0 chr9 96676065 96676142 -27400030 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1322 1048 300 48 9 chr9 96676284 96676600 -27399572 + MTE2a LTR MaLR 20 347 -32 3 1322 239 361 60 5 chr9 96676652 96676836 -27399336 + L2 LINE L2 2761 2954 -465 3 1322 205 256 0 0 chr9 96676842 96676885 -27399287 + (GTCTG)n Simple_repeat Simple_repeat 2 44 0 3 1322 1420 214 109 90 chr9 96676933 96677137 -27399035 + MT2A LTR ERVL 1 199 -334 3 1322 828 207 0 7 chr9 96677137 96677288 -27398884 - B1_Mur4 SINE Alu 0 150 1 3 1322 1420 214 109 90 chr9 96677288 96677606 -27398566 + MT2A LTR ERVL 200 533 0 3 1322 306 0 0 0 chr9 96677629 96677663 -27398509 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1322 357 24 0 0 chr9 96677663 96677704 -27398468 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1322 226 154 0 25 chr9 96677704 96677744 -27398428 + RLTR17 LTR ERVK 651 689 -3 3 1322 294 234 59 47 chr9 96678232 96678317 -27397855 + MLT1A1 LTR MaLR 320 405 -3 3 1322 240 188 0 20 chr9 96678318 96678367 -27397805 + MLT1A1 LTR MaLR 361 408 0 3 1322 363 267 139 15 chr9 96678427 96678564 -27397608 + RMER15 LTR ERVL 422 575 0 3 1322 1102 372 33 10 chr9 96678564 96679085 -27397087 + RMER15-int LTR ERVL 1 533 -4466 3 1322 374 290 83 8 chr9 96679165 96679297 -27396875 + RMER15 LTR ERVL 434 575 0 3 1322 930 206 67 0 chr9 96679584 96679764 -27396408 + B3 SINE B2 1 192 -24 3 1322 901 211 87 5 chr9 96679803 96679998 -27396174 - B3 SINE B2 -5 211 1 3 1322 183 42 0 0 chr9 96680881 96680905 -27395267 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1322 225 154 0 0 chr9 96681514 96681553 -27394619 + (TTA)n Simple_repeat Simple_repeat 1 39 0 3 1322 549 80 0 0 chr9 96682983 96683058 -27393114 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1322 252 304 14 0 chr9 96684106 96684175 -27391997 + MER2B DNA MER2_type 2 71 -265 3 1322 251 279 114 134 chr9 96684397 96684546 -27391626 - B3A SINE B2 0 198 53 3 1322 382 300 94 0 chr9 96685077 96685247 -27390925 - L1MC3 LINE L1 -493 7292 7107 3 1322 1217 189 0 14 chr9 96685408 96685617 -27390555 + B3 SINE B2 1 206 -10 3 1322 23 0 0 0 chr9 96685617 96685640 -27390532 + AT_rich Low_complexity Low_complexity 1 23 0 3 1322 27 29 0 0 chr9 96686142 96686176 -27389996 + AT_rich Low_complexity Low_complexity 1 34 0 3 1322 198 0 0 0 chr9 96687157 96687179 -27388993 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1322 429 20 0 0 chr9 96687267 96687317 -27388855 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1322 594 187 90 0 chr9 96689288 96689422 -27386750 + B1_Mur4 SINE Alu 1 146 -4 3 1322 548 299 64 79 chr9 96689612 96689982 -27386190 - ORR1E LTR MaLR 0 379 4 3 1322 201 338 0 38 chr9 96690109 96690189 -27385983 - L2c LINE L2 -24 3363 3287 3 1322 249 298 86 17 chr9 96690631 96690747 -27385425 + MLT1C LTR MaLR 14 137 -330 3 1322 284 277 0 0 chr9 96690799 96690864 -27385308 - ID4_ SINE ID -14 69 5 3 1322 751 185 20 7 chr9 96690968 96691115 -27385057 - B1_Mur2 SINE Alu 0 149 1 3 1322 893 249 48 5 chr9 96691163 96691349 -27384823 - B3 SINE B2 -1 215 22 3 1322 3916 189 49 44 chr9 96691453 96692357 -27383815 - RMER13B LTR ERVK 0 908 1 3 1322 1146 236 86 26 chr9 96692357 96692661 -27383511 - RCHARR1 DNA MER1_type -65 909 588 3 1322 667 280 67 27 chr9 96692652 96692876 -27383296 - RCHARR1 DNA MER1_type -733 241 9 3 1322 466 275 180 24 chr9 96693051 96693364 -27382808 + MLT1F1 LTR MaLR 76 539 -30 3 1322 968 114 3 12 chr9 96693364 96693696 -27382476 + (CA)n Simple_repeat Simple_repeat 1 328 0 3 1322 241 258 0 31 chr9 96693713 96693777 -27382395 - Charlie1a DNA MER1_type -664 791 730 3 1322 456 308 109 55 chr9 96693780 96694000 -27382172 - Charlie1a DNA MER1_type -1074 381 150 3 1322 408 264 60 54 chr9 96694013 96694181 -27381991 - RMER15 LTR ERVL -3 572 404 3 1322 288 0 0 0 chr9 96694514 96694546 -27381626 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1322 269 292 45 45 chr9 96694631 96694742 -27381430 - ID_B1 SINE B4 -9 215 105 4 1322 298 246 20 170 chr9 96695007 96695154 -27381018 + ID_B1 SINE B4 2 126 -98 4 1322 495 244 86 9 chr9 96695194 96695310 -27380862 + B1_Mur1 SINE Alu 5 129 -20 4 1322 741 53 0 0 chr9 96695327 96695421 -27380751 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 4 1322 180 0 0 0 chr9 96696356 96696376 -27379796 + (C)n Simple_repeat Simple_repeat 1 20 0 4 1322 336 234 73 27 chr9 96697207 96697317 -27378855 - B3 SINE B2 -2 214 100 4 1322 354 257 109 9 chr9 96697303 96697413 -27378759 + RMER5 LTR ERV1 414 534 0 4 1322 393 70 0 0 chr9 96698028 96698085 -27378087 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1322 1750 219 19 8 chr9 96698249 96698613 -27377559 - ORR1D2 LTR MaLR -2 368 1 4 1322 2347 86 38 0 chr9 96698618 96698933 -27377239 + ORR1A2 LTR MaLR 1 327 0 4 1322 780 262 23 19 chr9 96699266 96699480 -27376692 + B3 SINE B2 1 215 -1 4 1322 1381 141 52 13 chr9 96699509 96699739 -27376433 - MTC LTR MaLR -182 239 1 4 1322 1823 107 27 0 chr9 96699849 96700112 -27376060 + RMER17C-int LTR ERVK 2969 3238 0 4 1322 1350 142 261 18 chr9 96700112 96700280 -27375892 + RMER17C LTR ERVK 1 209 -201 4 1322 492 48 0 0 chr9 96700280 96700343 -27375829 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1322 1350 142 261 18 chr9 96700343 96700504 -27375668 + RMER17C LTR ERVK 210 410 0 4 1322 1424 186 115 56 chr9 96700909 96701124 -27375048 + RLTR23 LTR ERV1 1 235 -195 4 1322 1766 153 39 105 chr9 96701124 96701208 -27374964 + RMER17C LTR ERVK 1 84 -326 4 1322 746 31 10 0 chr9 96701208 96701305 -27374867 + (TC)n Simple_repeat Simple_repeat 2 99 0 4 1322 1766 153 39 105 chr9 96701305 96701659 -27374513 + RMER17C LTR ERVK 85 410 0 4 1322 1424 186 115 56 chr9 96701659 96701818 -27374354 + RLTR23 LTR ERV1 236 397 -33 4 1322 464 180 11 11 chr9 96702331 96702421 -27373751 - RMER1C Other Other -5 1337 1248 4 1322 1129 153 16 16 chr9 96702421 96702607 -27373565 - RMER19C LTR ERVK 0 611 426 4 1322 2492 115 57 17 chr9 96702593 96702999 -27373173 - RLTR11A LTR ERVK -106 422 1 4 1322 222 306 59 104 chr9 96703906 96703922 -27372250 + B4 SINE B4 70 79 -213 4 1322 569 180 16 105 chr9 96703922 96704046 -27372126 + B1_Mus1 SINE Alu 1 113 -35 4 1322 1845 224 3 34 chr9 96704789 96705168 -27371004 + MTC LTR MaLR 13 379 -42 4 1322 413 290 221 41 chr9 96705249 96705588 -27370584 + MTD LTR MaLR 20 419 0 4 1322 414 0 0 0 chr9 96706171 96706217 -27369955 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1322 318 26 0 0 chr9 96706724 96706763 -27369409 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1322 863 262 34 22 chr9 96706774 96707043 -27369129 - B4A SINE B4 -19 273 2 4 1322 627 214 67 4 chr9 96707258 96707442 -27368730 - B3 SINE B2 0 198 1 4 1322 364 225 86 29 chr9 96708378 96708483 -27367689 + MLT1A1 LTR MaLR 27 137 -271 4 1322 1181 55 0 20 chr9 96709364 96709513 -27366659 + B1_Mus2 SINE Alu 2 147 0 4 1322 228 167 53 53 chr9 96709876 96709971 -27366201 + (CATAT)n Simple_repeat Simple_repeat 1 95 0 4 1322 515 304 96 23 chr9 96711160 96711379 -27364793 - Lx8 LINE L1 -248 7225 6991 4 1322 225 65 0 0 chr9 96711387 96711418 -27364754 + (TGG)n Simple_repeat Simple_repeat 1 31 0 4 1322 1977 270 186 73 chr9 96711425 96711820 -27364352 - Lx8 LINE L1 -730 6743 6327 4 1322 793 189 7 7 chr9 96711820 96711969 -27364203 - B1_Mur3 SINE Alu 0 149 1 4 1322 1977 270 186 73 chr9 96711969 96712612 -27363560 - Lx8 LINE L1 -1147 6326 5588 4 1322 2360 261 132 56 chr9 96712624 96713795 -27362377 - L1M2 LINE L1 -834 5309 4051 4 1322 254 95 0 23 chr9 96713799 96713842 -27362330 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 4 1322 968 228 52 30 chr9 96714784 96715055 -27361117 - L1_Mur3 LINE L1 -1862 4018 3742 4 1322 1809 157 75 47 chr9 96715060 96715420 -27360752 + ORR1B1 LTR MaLR 22 391 -3 4 1322 654 284 78 78 chr9 96715422 96715573 -27360599 - L1_Mur3 LINE L1 -2158 3722 3592 4 1322 649 159 158 8 chr9 96715573 96715700 -27360472 + B1_Mur4 SINE Alu 5 150 0 4 1322 654 284 78 78 chr9 96715700 96716060 -27360112 - L1_Mur3 LINE L1 -2289 3591 3211 4 1322 660 294 127 19 chr9 96716297 96716564 -27359608 - MER2 DNA MER2_type -10 335 40 4 1322 1122 259 127 6 chr9 96717135 96717398 -27358774 + ORR1D2 LTR MaLR 1 289 -81 4 1322 3027 80 0 22 chr9 96717398 96717807 -27358365 + MTB LTR MaLR 1 400 0 4 1322 1122 259 127 6 chr9 96717807 96717873 -27358299 + ORR1D2 LTR MaLR 290 369 -1 4 1322 243 0 0 0 chr9 96718148 96718174 -27357998 + L1Md_T LINE L1 6166 6191 -391 4 1322 3849 2 0 0 chr9 96718220 96718637 -27357535 + L1Md_T LINE L1 6166 6582 0 4 1322 249 33 0 0 chr9 96718665 96718695 -27357477 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1322 797 121 105 0 chr9 96718704 96718828 -27357344 + B1_Mus2 SINE Alu 1 137 -10 4 1322 203 0 37 0 chr9 96718828 96718855 -27357317 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1322 254 233 132 97 chr9 96720066 96720180 -27355992 + PB1 SINE Alu 3 120 -7 4 1322 460 155 0 0 chr9 96720189 96720260 -27355912 + ID4 SINE ID 3 73 -10 4 1322 1372 64 31 21 chr9 96720573 96720765 -27355407 - B2_Mm2 SINE B2 0 195 2 4 1322 1233 35 7 0 chr9 96720794 96720939 -27355233 + B1_Mus2 SINE Alu 2 147 0 4 1322 657 156 110 0 chr9 96721278 96721387 -27354785 + B1_Mur3 SINE Alu 29 149 0 4 1322 754 186 130 5 chr9 96721403 96721587 -27354585 - B3 SINE B2 -9 207 1 4 1322 1742 270 151 27 chr9 96721767 96722369 -27353803 + MER21B LTR ERV1 58 734 -129 4 1322 189 107 0 0 chr9 96722559 96722587 -27353585 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1322 793 167 0 27 chr9 96722607 96722792 -27353380 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1322 575 276 13 0 chr9 96722815 96722971 -27353201 - Lx9 LINE L1 -171 7473 7316 4 1322 228 289 58 0 chr9 96723052 96723104 -27353068 + MTE2b LTR MaLR 250 304 -75 4 1322 263 191 63 0 chr9 96723176 96723239 -27352933 - L1MA8 LINE L1 -148 6143 6077 4 1322 252 0 0 0 chr9 96723506 96723534 -27352638 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1322 315 0 0 0 chr9 96723623 96723658 -27352514 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1322 239 338 19 126 chr9 96724577 96724736 -27351436 + MER58A DNA MER1_type 80 221 -3 4 1322 1092 184 0 26 chr9 96727149 96727339 -27348833 - B3 SINE B2 -28 188 4 4 1322 537 322 6 45 chr9 96727460 96727616 -27348556 - RSINE1 SINE B4 -8 157 8 4 1322 2355 102 9 3 chr9 96728268 96728593 -27347579 + ORR1A2 LTR MaLR 1 327 0 4 1322 958 196 132 0 chr9 96729625 96729814 -27346358 + B3 SINE B2 3 216 0 4 1322 271 242 0 0 chr9 96730142 96730204 -27345968 + G-rich Low_complexity Low_complexity 1 62 0 4 1322 288 0 0 0 chr9 96730338 96730370 -27345802 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1322 1184 61 7 0 chr9 96730651 96730798 -27345374 + B1_Mus1 SINE Alu 1 148 0 4 1322 354 45 0 0 chr9 96731003 96731047 -27345125 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1323 216 0 0 0 chr9 96731234 96731258 -27344914 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1323 477 230 0 0 chr9 96733455 96733633 -27342539 + GA-rich Low_complexity Low_complexity 1 178 0 4 1323 842 132 15 0 chr9 96734255 96734342 -27341830 + ORR1B2 LTR MaLR 1 89 -278 4 1323 819 113 54 47 chr9 96734342 96734491 -27341681 + B2_Mm2 SINE B2 4 153 -42 4 1323 482 78 13 0 chr9 96734518 96734595 -27341577 + B2_Mm1t SINE B2 116 193 0 4 1323 1331 150 39 22 chr9 96734605 96734837 -27341335 + ORR1B2 LTR MaLR 132 367 0 4 1323 244 312 36 27 chr9 96735143 96735255 -27340917 + L2b LINE L2 2976 3088 -287 4 1323 769 89 145 8 chr9 96735443 96735567 -27340605 + B2_Mm2 SINE B2 7 147 -48 4 1323 351 0 0 0 chr9 96735568 96735607 -27340565 + (CATA)n Simple_repeat Simple_repeat 1 39 0 4 1323 351 0 0 0 chr9 96736078 96736117 -27340055 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1323 458 320 105 14 chr9 96736117 96736372 -27339800 - MER44A DNA MER2_type -53 286 1 4 1323 2174 109 20 58 chr9 96736509 96736851 -27339321 - ORR1A4 LTR MaLR 0 329 1 4 1323 586 262 242 9 chr9 96739137 96739364 -27336808 + RMER15 LTR ERVL 296 575 0 4 1323 206 256 0 0 chr9 96739966 96740005 -27336167 + L4 LINE RTE 1984 2022 -7 4 1323 270 0 0 0 chr9 96741249 96741279 -27334893 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 4 1323 230 341 21 21 chr9 96741295 96741388 -27334784 - Charlie23a DNA MER1_type 0 339 247 4 1323 377 293 37 79 chr9 96741619 96741872 -27334300 + L1MD LINE L1 5188 5482 -758 4 1323 1921 93 109 10 chr9 96741876 96742179 -27333993 + ORR1B2 LTR MaLR 27 359 -8 4 1323 1223 246 62 45 chr9 96742135 96742489 -27333683 - MTEb LTR MaLR -19 360 1 4 1323 2008 254 127 5 chr9 96742489 96743047 -27333125 - MTEb-int LTR MaLR 0 1580 955 4 1323 1639 253 201 15 chr9 96743036 96743573 -27332599 - MTEb-int LTR MaLR -943 637 1 4 1323 1403 234 43 29 chr9 96743573 96743947 -27332225 - MTEb LTR MaLR 0 379 1 4 1323 21 0 0 0 chr9 96745754 96745775 -27330397 + GC_rich Low_complexity Low_complexity 1 21 0 4 1323 2373 121 32 34 chr9 96746093 96746471 -27329701 + ORR1C1 LTR MaLR 2 378 0 4 1323 672 317 98 61 chr9 96747302 96747648 -27328524 + ORR1E LTR MaLR 1 359 0 4 1323 2191 159 88 5 chr9 96747810 96748196 -27327976 + MTD LTR MaLR 2 419 0 4 1323 914 190 12 127 chr9 96748580 96748833 -27327339 - URR1A DNA MER1_type 0 226 3 4 1323 653 226 84 39 chr9 96749244 96749447 -27326725 - B3 SINE B2 0 216 5 4 1323 582 196 189 28 chr9 96750235 96750467 -27325705 - Lx2B LINE L1 -6 7052 6677 4 1323 195 42 0 0 chr9 96750640 96750664 -27325508 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1323 504 323 62 0 chr9 96750664 96750794 -27325378 - RSINE1 SINE B4 -24 141 4 4 1323 396 0 0 0 chr9 96751309 96751353 -27324819 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1323 203 217 0 42 chr9 96752274 96752322 -27323850 - MER5A DNA MER1_type -52 137 92 4 1323 275 212 310 0 chr9 96752703 96752816 -27323356 - MIRb SINE MIR -28 240 93 4 1323 1368 67 0 0 chr9 96753288 96753468 -27322704 + (CTAGGG)n Simple_repeat Simple_repeat 1 180 0 4 1323 1176 59 0 0 chr9 96753468 96753621 -27322551 + (TTAGGG)n Simple_repeat Simple_repeat 4 156 0 5 1323 216 67 0 0 chr9 96755761 96755791 -27320381 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 5 1323 282 221 239 0 chr9 96756538 96756633 -27319539 + PB1D7 SINE Alu 5 120 0 5 1323 483 280 70 45 chr9 96757605 96757762 -27318410 - RSINE1 SINE B4 0 165 5 5 1323 289 220 54 4 chr9 96758745 96758838 -27317334 - B1F SINE Alu 0 149 53 5 1323 281 247 182 24 chr9 96759080 96759250 -27316922 + MIRc SINE MIR 2 198 -70 5 1323 244 350 0 0 chr9 96759896 96759976 -27316196 + MLT1H2 LTR MaLR 75 154 -335 5 1323 231 382 42 37 chr9 96760931 96761146 -27315026 + MIRb SINE MIR 7 222 -46 5 1323 615 128 0 0 chr9 96762826 96762935 -27313237 + (TCCA)n Simple_repeat Simple_repeat 1 109 0 5 1323 185 0 40 0 chr9 96763139 96763164 -27313008 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1323 948 229 26 11 chr9 96763178 96763368 -27312804 + B3 SINE B2 1 193 -23 5 1323 21 0 0 0 chr9 96763468 96763489 -27312683 + AT_rich Low_complexity Low_complexity 1 21 0 5 1323 1211 29 0 0 chr9 96764756 96764892 -27311280 + B1_Mus1 SINE Alu 1 136 -12 5 1323 486 0 0 0 chr9 96764894 96764948 -27311224 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1323 275 344 90 85 chr9 96765133 96765333 -27310839 + MLT1J LTR MaLR 50 250 -262 5 1323 312 27 0 0 chr9 96765768 96765805 -27310367 + (CAA)n Simple_repeat Simple_repeat 3 39 0 5 1323 389 370 133 14 chr9 96765895 96766188 -27309984 - MLT1L LTR MaLR -155 455 128 5 1323 443 177 213 65 chr9 96766617 96766786 -27309386 - B2_Mm2 SINE B2 -1 194 1 5 1323 323 337 59 49 chr9 96767189 96767205 -27308967 + L1MEg LINE L1 1136 1151 -5064 5 1323 756 106 203 0 chr9 96767205 96767328 -27308844 + B1_Mur4 SINE Alu 3 150 0 5 1323 362 291 49 28 chr9 96767328 96767514 -27308658 + L1MEg LINE L1 2109 2193 -4117 5 1323 1227 215 41 137 chr9 96768160 96768553 -27307619 - ORR1E LTR MaLR -2 357 3 5 1323 954 123 7 20 chr9 96768834 96768983 -27307189 + B1_Mus1 SINE Alu 2 148 0 5 1323 297 135 0 0 chr9 96768991 96769043 -27307129 + (A)n Simple_repeat Simple_repeat 1 52 0 5 1323 859 120 52 8 chr9 96769358 96769492 -27306680 + B1_Mus1 SINE Alu 2 141 -7 5 1323 684 0 0 0 chr9 96769494 96769570 -27306602 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 1323 373 309 68 63 chr9 96770006 96770196 -27305976 - ORR1E LTR MaLR -168 191 1 5 1323 375 257 26 44 chr9 96770313 96770427 -27305745 + MLT1G1 LTR MaLR 125 236 -343 5 1323 1087 190 19 0 chr9 96772037 96772242 -27303930 + B3 SINE B2 2 210 -6 5 1323 755 239 72 6 chr9 96772521 96772702 -27303470 + B3 SINE B2 3 195 -21 5 1323 1521 190 106 12 chr9 96773829 96774159 -27302013 + ORR1D2 LTR MaLR 3 363 -7 5 1323 375 23 0 0 chr9 96774373 96774417 -27301755 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1323 1257 34 7 0 chr9 96774921 96775067 -27301105 + B1_Mm SINE Alu 1 147 0 5 1323 1129 136 68 240 chr9 96775086 96775310 -27300862 + ORR1C1 LTR MaLR 13 177 -201 5 1323 906 122 0 0 chr9 96775310 96775490 -27300682 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1323 1129 136 68 240 chr9 96775490 96775632 -27300540 + ORR1C1 LTR MaLR 178 316 -62 5 1323 260 217 50 0 chr9 96775674 96775734 -27300438 + ORR1C1 LTR MaLR 304 366 -12 5 1323 213 39 0 0 chr9 96776552 96776578 -27299594 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 5 1323 24 0 0 0 chr9 96776825 96776849 -27299323 + GC_rich Low_complexity Low_complexity 1 24 0 5 1323 318 50 0 0 chr9 96777267 96777307 -27298865 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1323 305 133 0 0 chr9 96777732 96777777 -27298395 - B1F SINE Alu -86 63 19 5 1323 26 0 0 0 chr9 96777819 96777845 -27298327 + AT_rich Low_complexity Low_complexity 1 26 0 5 1323 528 30 0 0 chr9 96780157 96780223 -27295949 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1323 938 136 272 0 chr9 96780706 96780875 -27295297 + B3 SINE B2 2 216 0 5 1323 328 318 136 7 chr9 96780991 96781146 -27295026 + MLT1J2 LTR MaLR 1 175 -273 5 1323 268 161 51 51 chr9 96783628 96783687 -27292485 + ID SINE ID 24 82 -142 5 1323 434 301 108 24 chr9 96783759 96783926 -27292246 - MIRb SINE MIR -3 265 85 5 1323 285 214 41 41 chr9 96784268 96784341 -27291831 - PB1D7 SINE Alu -12 108 36 5 1323 1043 270 61 81 chr9 96784420 96784779 -27291393 - MTE2b LTR MaLR -20 359 8 5 1323 1253 181 19 0 chr9 96784906 96785116 -27291056 - B3 SINE B2 0 216 3 5 1323 222 224 100 33 chr9 96787473 96787492 -27288680 + B4 SINE B4 65 87 -205 5 1323 319 171 341 0 chr9 96787492 96787574 -27288598 + B1_Mur1 SINE Alu 3 112 -37 5 1323 393 22 0 0 chr9 96787574 96787620 -27288552 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 5 1323 318 256 29 81 chr9 96787620 96787673 -27288499 + B1_Mm SINE Alu 81 131 -16 5 1323 243 0 0 0 chr9 96788022 96788049 -27288123 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1323 486 0 0 0 chr9 96791172 96791226 -27284946 + (CATA)n Simple_repeat Simple_repeat 2 55 0 5 1323 189 306 92 59 chr9 96793595 96793748 -27282424 - MIR3 SINE MIR -11 197 40 5 1323 242 281 66 58 chr9 96793853 96793974 -27282198 - MIR3 SINE MIR -72 136 15 5 1323 297 259 26 17 chr9 96794346 96794439 -27281733 + ORR1E LTR MaLR 1 92 -282 5 1323 257 245 125 89 chr9 96794469 96794581 -27281591 + ORR1E LTR MaLR 69 184 -190 5 1323 213 39 0 0 chr9 96794810 96794836 -27281336 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 1323 422 86 0 17 chr9 96794852 96794911 -27281261 - B2_Mm2 SINE B2 -91 104 47 5 1323 1267 99 0 0 chr9 96794928 96795100 -27281072 - B2_Mm2 SINE B2 -22 173 2 5 1323 21 36 0 0 chr9 96795420 96795448 -27280724 + AT_rich Low_complexity Low_complexity 1 28 0 5 1323 186 103 0 0 chr9 96796764 96796793 -27279379 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1323 1992 120 112 49 chr9 96797286 96797653 -27278519 + ORR1B1 LTR MaLR 5 394 0 5 1323 363 231 114 42 chr9 96798242 96798426 -27277746 + RLTR42-int LTR ERVK 1639 1795 -3727 5 1323 1082 95 163 64 chr9 96799411 96799614 -27276558 - URR1B DNA MER1_type 0 225 3 5 1323 383 259 110 20 chr9 96800987 96801133 -27275039 - RSINE1 SINE B4 -4 161 3 5 1323 443 360 6 58 chr9 96801311 96801482 -27274690 + RSINE1 SINE B4 3 164 -1 5 1323 278 259 48 26 chr9 96801500 96801636 -27274536 + L1MA4 LINE L1 3350 3488 -2655 5 1323 438 317 72 9 chr9 96801770 96802200 -27273972 + L1MA4 LINE L1 5016 5485 -827 5 1323 886 141 42 14 chr9 96802526 96802670 -27273502 + B1_Mur4 SINE Alu 1 148 -2 5 1323 213 39 0 0 chr9 96802736 96802762 -27273410 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 5 1323 1080 88 0 0 chr9 96802764 96802900 -27273272 - B1_Mus1 SINE Alu -12 136 1 5 1323 442 310 140 88 chr9 96802911 96803240 -27272932 + L1M4 LINE L1 4394 4739 -1407 5 1323 284 234 68 123 chr9 96803250 96803323 -27272849 + PB1D10 SINE Alu 5 73 -54 5 1323 502 256 57 21 chr9 96803402 96803542 -27272630 + RSINE1 SINE B4 3 147 -18 5 1323 233 293 35 28 chr9 96803587 96803731 -27272441 + L1M4 LINE L1 4856 5000 -1146 5 1323 4226 99 93 6 chr9 96803735 96804404 -27271768 - RMER17B LTR ERVK -4 954 228 5 1323 401 222 12 36 chr9 96804379 96804463 -27271709 - RLTR26 LTR ERVK -490 152 71 5 1323 1272 48 0 0 chr9 96804543 96804690 -27271482 + B1_Mus2 SINE Alu 1 147 0 5 1323 921 274 73 23 chr9 96804693 96805239 -27270933 + L1M4 LINE L1 5042 5613 -2172 5 1323 323 151 0 0 chr9 96805241 96805294 -27270878 + MTEa LTR MaLR 2 54 -325 5 1323 477 291 45 95 chr9 96806731 96806974 -27269198 + RMER15 LTR ERVL 345 575 0 5 1323 484 286 85 1 chr9 96807142 96807386 -27268786 + L1MA4 LINE L1 5451 5713 -590 5 1323 1281 217 100 24 chr9 96807407 96807760 -27268412 - MTD LTR MaLR -47 374 1 5 1323 724 225 106 22 chr9 96807791 96808077 -27268095 + L1MA4 LINE L1 5711 6021 -279 5 1323 261 286 0 0 chr9 96808215 96808264 -27267908 + MLT1A0 LTR MaLR 157 205 -160 5 1323 318 291 58 22 chr9 96808305 96808442 -27267730 + L1M2 LINE L1 5417 5558 -754 5 1323 278 182 27 120 chr9 96808442 96808517 -27267655 + MLT1A0 LTR MaLR 234 301 -64 5 1323 276 219 31 0 chr9 96808532 96808596 -27267576 - L1MEc LINE L1 -4566 1834 1769 5 1323 2646 192 40 40 chr9 96809626 96810201 -27265971 + RMER15 LTR ERVL 1 575 0 5 1323 276 259 19 24 chr9 96810218 96810331 -27265841 - MIRm SINE MIR -127 149 30 5 1323 426 39 0 0 chr9 96811043 96811095 -27265077 + (TCC)n Simple_repeat Simple_repeat 3 54 0 5 1323 390 346 75 34 chr9 96811137 96811159 -27265013 + Lx8 LINE L1 7168 7188 -285 5 1323 2123 155 55 0 chr9 96811159 96811520 -27264652 - RLTR14 LTR ERV1 0 382 2 5 1323 390 346 75 34 chr9 96811520 96811659 -27264513 + Lx8 LINE L1 7189 7325 -148 5 1323 324 0 0 0 chr9 96811659 96811695 -27264477 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1323 390 346 75 34 chr9 96811695 96811825 -27264347 + Lx8 LINE L1 7326 7471 -2 5 1323 1232 218 79 162 chr9 96811989 96812570 -27263602 - MT2A LTR ERVL 0 533 1 5 1323 1096 274 31 44 chr9 96812965 96813259 -27262913 + B4 SINE B4 1 290 -2 5 1323 572 311 133 31 chr9 96813524 96813780 -27262392 + MLT1A0 LTR MaLR 82 363 -2 5 1323 1325 62 51 11 chr9 96813821 96813999 -27262173 - B2_Mm1t SINE B2 -7 186 2 5 1323 758 249 30 50 chr9 96814554 96814753 -27261419 - B3A SINE B2 -3 195 1 5 1323 324 309 24 0 chr9 96815024 96815147 -27261025 + L1M5 LINE L1 5629 5754 -408 5 1323 185 65 32 0 chr9 96815194 96815225 -27260947 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1323 281 232 24 24 chr9 96815238 96815322 -27260850 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 5 1323 268 295 26 0 chr9 96815501 96815579 -27260593 - ID4_ SINE ID -2 81 2 5 1323 1214 197 0 26 chr9 96816080 96816309 -27259863 + URR1A DNA MER1_type 1 223 -3 5 1323 285 320 0 0 chr9 96816461 96816633 -27259539 + (CCCA)n Simple_repeat Simple_repeat 2 173 0 5 1323 182 229 0 0 chr9 96817051 96817086 -27259086 - MIR SINE MIR -157 105 71 6 1323 218 187 174 35 chr9 96817598 96817697 -27258475 - MIRb SINE MIR -140 128 15 6 1323 598 204 6 13 chr9 96818089 96818248 -27257924 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 6 1323 3320 142 13 70 chr9 96818459 96819063 -27257109 - RMER15 LTR ERVL 0 575 6 6 1323 244 351 58 19 chr9 96819125 96819279 -27256893 + Charlie7 DNA MER1_type 1 160 -2452 6 1323 273 281 67 0 chr9 96819400 96819489 -27256683 + Charlie7 DNA MER1_type 1430 1524 -1088 6 1323 1018 146 21 145 chr9 96819849 96820090 -27256082 - RMER15 LTR ERVL -285 290 80 6 1323 919 166 17 41 chr9 96820108 96820359 -27255813 + ORR1D1 LTR MaLR 41 374 0 6 1323 250 270 189 0 chr9 96820560 96820671 -27255501 + RMER15 LTR ERVL 1 132 -443 6 1323 321 267 177 16 chr9 96820696 96820919 -27255253 + RMER15 LTR ERVL 273 561 -14 6 1323 381 75 0 0 chr9 96821004 96821057 -27255115 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1323 926 162 21 43 chr9 96821220 96821407 -27254765 - B2_Mm2 SINE B2 -11 184 2 6 1323 212 346 123 48 chr9 96821942 96822252 -27253920 - L2b LINE L2 -86 3289 2957 6 1323 312 27 0 0 chr9 96823002 96823039 -27253133 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1323 180 0 0 0 chr9 96823039 96823059 -27253113 + (CG)n Simple_repeat Simple_repeat 1 20 0 6 1323 380 329 117 0 chr9 96823179 96823316 -27252856 - Charlie16a DNA MER1_type -61 281 129 6 1323 225 385 48 0 chr9 96823500 96823604 -27252568 + MLT1K LTR MaLR 186 294 -301 6 1323 183 212 0 0 chr9 96824103 96824136 -27252036 - L2b LINE L2 -13 3362 3330 6 1323 327 245 28 47 chr9 96824898 96825005 -27251167 - MTEa LTR MaLR -11 368 264 6 1323 251 304 192 31 chr9 96825953 96826177 -27249995 + MamGypLTR1b LTR Gypsy 520 779 -3 6 1323 875 171 27 0 chr9 96826387 96826533 -27249639 - B1_Mur4 SINE Alu 0 150 1 6 1323 242 29 0 28 chr9 96827144 96827180 -27248992 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1323 450 0 0 0 chr9 96827444 96827494 -27248678 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1323 849 291 55 32 chr9 96827494 96827842 -27248330 + ORR1E LTR MaLR 4 359 0 6 1323 442 361 89 7 chr9 96828744 96828956 -27247216 + MIR SINE MIR 41 262 0 6 1323 186 286 0 0 chr9 96828957 96829055 -27247117 + (CCA)n Simple_repeat Simple_repeat 2 99 0 6 1323 280 227 61 0 chr9 96829399 96829465 -27246707 + MLT1N2 LTR MaLR 6 75 -487 6 1323 404 256 174 5 chr9 96830010 96830234 -27245938 - L1MD1 LINE L1 0 6242 5981 6 1323 217 217 167 0 chr9 96830281 96830341 -27245831 - ID4 SINE ID -5 78 9 6 1323 543 243 0 0 chr9 96830351 96830462 -27245710 - PB1D10 SINE Alu -5 112 2 6 1323 486 297 96 8 chr9 96830465 96830726 -27245446 - L1MD1 LINE L1 -280 5962 5679 6 1323 978 170 81 15 chr9 96830844 96830994 -27245178 - B3 SINE B2 -6 210 52 6 1323 3380 46 2 2 chr9 96830994 96831390 -27244782 + MTA_Mm LTR MaLR 1 396 0 6 1323 978 170 81 15 chr9 96831390 96831436 -27244736 - B3 SINE B2 -165 51 1 6 1323 428 280 106 30 chr9 96831438 96831857 -27244315 - L1MD1 LINE L1 -724 5518 5067 6 1323 796 226 88 6 chr9 96832167 96832327 -27243845 - B3A SINE B2 -24 174 2 6 1323 1763 181 40 6 chr9 96832418 96832769 -27243403 - Lx7 LINE L1 -372 7324 6962 6 1323 525 122 71 10 chr9 96832770 96832869 -27243303 + L1_Mur3 LINE L1 4649 4753 -1127 6 1323 22 35 0 0 chr9 96833056 96833085 -27243087 + AT_rich Low_complexity Low_complexity 1 29 0 6 1323 594 200 73 15 chr9 96833092 96833229 -27242943 - RSINE1 SINE B4 -13 152 8 6 1323 24 32 0 0 chr9 96833446 96833477 -27242695 + AT_rich Low_complexity Low_complexity 1 31 0 6 1323 413 308 90 60 chr9 96833948 96834246 -27241926 - B4A SINE B4 -16 276 1 6 1323 470 268 100 26 chr9 96834268 96834498 -27241674 - L1ME2 LINE L1 -284 5880 5634 6 1323 835 306 88 71 chr9 96834499 96835023 -27241149 - MT2A LTR ERVL 0 533 1 6 1323 276 300 0 14 chr9 96835216 96835287 -27240885 + RSINE1 SINE B4 88 157 -8 6 1323 210 191 0 0 chr9 96835407 96835454 -27240718 + GA-rich Low_complexity Low_complexity 2 48 0 6 1323 459 327 89 12 chr9 96835503 96835930 -27240242 - L1ME2 LINE L1 -1059 5087 4613 6 1323 378 0 0 0 chr9 96835983 96836025 -27240147 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1323 250 284 14 0 chr9 96836025 96836099 -27240073 - L1M2 LINE L1 -529 5762 5688 6 1323 300 299 47 4 chr9 96836103 96836269 -27239903 - L1M2 LINE L1 -1018 5122 4918 6 1323 538 284 218 13 chr9 96836309 96836696 -27239476 - L1M2 LINE L1 -1702 4145 3666 6 1323 1431 45 0 0 chr9 96836696 96836962 -27239210 + (TG)n Simple_repeat Simple_repeat 1 266 0 6 1323 524 250 78 0 chr9 96836980 96837108 -27239064 - B3A SINE B2 -60 138 1 6 1323 278 298 21 97 chr9 96837108 96837253 -27238919 - B4A SINE B4 -157 135 2 6 1323 1175 279 114 8 chr9 96837311 96837687 -27238485 - MTD LTR MaLR -2 417 2 6 1323 239 297 16 141 chr9 96837717 96837901 -27238271 + RMER15 LTR ERVL 1 161 -414 6 1323 575 333 71 7 chr9 96837902 96838183 -27237989 + RMER15 LTR ERVL 277 575 0 6 1323 279 261 15 0 chr9 96838183 96838248 -27237924 + RMER15-int LTR ERVL 1 66 -4933 6 1323 1051 282 64 23 chr9 96838248 96838593 -27237579 + MTD LTR MaLR 59 417 -2 6 1323 3055 302 51 28 chr9 96838623 96839719 -27236453 + RMER15-int LTR ERVL 204 1324 -3675 6 1323 712 197 263 5 chr9 96839724 96839918 -27236254 - ORR1D1 LTR MaLR 0 374 131 6 1323 1737 86 21 0 chr9 96839920 96840163 -27236009 - L1_Mus4 LINE L1 -305 5578 5331 6 1323 7757 64 21 1 chr9 96840162 96841180 -27234992 + L1_Mus4 LINE L1 5587 6624 -12 6 1323 243 0 0 0 chr9 96841181 96841208 -27234964 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 1323 748 173 7 0 chr9 96841209 96841348 -27234824 - ORR1D1 LTR MaLR -232 142 3 6 1323 656 312 79 24 chr9 96841348 96841601 -27234571 + RMER15-int LTR ERVL 1332 1598 -3401 6 1323 569 276 74 37 chr9 96841615 96841777 -27234395 - RMER30 DNA MER1_type 0 202 35 6 1323 356 316 55 41 chr9 96842076 96842221 -27233951 + RMER15-int LTR ERVL 1928 2074 -2925 6 1323 211 285 51 9 chr9 96843065 96843167 -27233005 - MIRc SINE MIR -143 125 23 6 1323 243 0 0 0 chr9 96843790 96843817 -27232355 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1323 201 74 0 0 chr9 96844078 96844105 -27232067 + (CAG)n Simple_repeat Simple_repeat 3 29 0 6 1323 556 151 0 17 chr9 96845420 96845521 -27230651 + PB1 SINE Alu 28 123 -4 6 1323 346 299 19 64 chr9 96845672 96845829 -27230343 + B4A SINE B4 1 150 -142 6 1323 286 221 39 13 chr9 96845828 96845906 -27230266 + RSINE1 SINE B4 73 152 -13 6 1323 1044 176 28 28 chr9 96846104 96846320 -27229852 - B3 SINE B2 0 216 1 6 1323 567 66 0 0 chr9 96846643 96846719 -27229453 + (TTTTC)n Simple_repeat Simple_repeat 2 77 0 6 1323 1039 87 0 7 chr9 96846719 96846858 -27229314 - B1_Mus1 SINE Alu -10 138 1 6 1323 441 0 0 0 chr9 96847212 96847261 -27228911 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1323 373 338 15 23 chr9 96847305 96847438 -27228734 - MIR SINE MIR -81 181 50 6 1323 246 350 106 6 chr9 96847472 96847633 -27228539 - MIR SINE MIR -7 255 79 6 1323 904 164 84 6 chr9 96849121 96849299 -27226873 - B3 SINE B2 -24 192 1 6 1323 324 0 0 0 chr9 96850752 96850788 -27225384 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 1323 370 346 28 42 chr9 96852168 96852310 -27223862 + B4A SINE B4 30 169 -123 6 1323 614 13 13 0 chr9 96852344 96852419 -27223753 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1323 894 159 191 0 chr9 96853665 96853854 -27222318 - URR1A DNA MER1_type -1 225 1 6 1323 427 252 45 26 chr9 96854098 96854253 -27221919 - MIR SINE MIR -21 241 84 6 1323 303 28 0 0 chr9 96854283 96854319 -27221853 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1323 207 0 0 0 chr9 96856343 96856366 -27219806 + (TTAGGG)n Simple_repeat Simple_repeat 6 28 0 6 1323 189 94 0 0 chr9 96857345 96857377 -27218795 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1323 245 266 15 15 chr9 96857695 96857760 -27218412 + GA-rich Low_complexity Low_complexity 1 65 0 6 1323 215 312 13 25 chr9 96857937 96858016 -27218156 + MIR SINE MIR 18 95 -113 6 1323 333 266 0 0 chr9 96859284 96859363 -27216809 - ID4 SINE ID 0 83 5 6 1323 447 254 24 8 chr9 96859382 96859509 -27216663 - B1F SINE Alu -8 141 13 6 1323 310 322 7 34 chr9 96859509 96859525 -27216647 - ID_B1 SINE B4 -3 216 78 6 1323 279 227 50 30 chr9 96860064 96860164 -27216008 + MLT1K LTR MaLR 173 274 -321 6 1323 1073 89 17 56 chr9 96860293 96860308 -27215864 - B2_Mm2 SINE B2 -23 172 159 6 1323 252 0 0 0 chr9 96860308 96860336 -27215836 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6 1323 1073 89 17 56 chr9 96860336 96860499 -27215673 - B2_Mm2 SINE B2 -37 158 1 6 1323 289 274 0 0 chr9 96861827 96861900 -27214272 - ID4 SINE ID -10 73 1 6 1323 254 173 79 0 chr9 96861935 96862023 -27214149 + MIRc SINE MIR 64 158 -50 6 1324 207 0 0 0 chr9 96864316 96864339 -27211833 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 6 1324 763 198 37 80 chr9 96865218 96865405 -27210767 - ORR1D2 LTR MaLR 0 370 192 6 1324 845 161 23 40 chr9 96865397 96865572 -27210600 - B2_Mm2 SINE B2 -8 187 16 6 1324 686 212 156 38 chr9 96865567 96865753 -27210419 - ORR1D2 LTR MaLR -162 208 1 6 1324 193 401 63 0 chr9 96866195 96866337 -27209835 - MIRb SINE MIR -42 226 76 6 1324 694 302 136 16 chr9 96867095 96867405 -27208767 - MLT1C LTR MaLR -50 417 71 6 1324 228 368 81 32 chr9 96867974 96868221 -27207951 + L1M5 LINE L1 5563 5821 -303 6 1324 343 360 64 101 chr9 96868281 96868933 -27207239 + L1M5 LINE L1 4182 4809 -1337 6 1324 1615 191 80 11 chr9 96868973 96869322 -27206850 + ORR1D1 LTR MaLR 1 373 -1 6 1324 264 111 0 0 chr9 96869721 96869766 -27206406 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 6 1324 656 254 101 30 chr9 96869767 96869966 -27206206 - MTEa LTR MaLR -166 213 1 6 1324 1661 296 60 11 chr9 96869969 96870498 -27205674 - Tigger7 DNA MER2_type -1878 613 59 6 1324 1971 80 98 39 chr9 96870530 96870868 -27205304 - RLTR15 LTR ERVK 0 359 2 6 1324 228 329 96 41 chr9 96871525 96871671 -27204501 + ORSL-2a DNA Tip100 6 159 -183 6 1324 629 251 106 11 chr9 96871812 96872001 -27204171 - MLT1C LTR MaLR -232 235 29 6 1324 279 252 8 87 chr9 96875377 96875503 -27200669 + L2a LINE L2 2491 2606 -813 6 1324 186 207 86 0 chr9 96875528 96875586 -27200586 + L2a LINE L2 2693 2755 -664 6 1324 404 335 103 46 chr9 96875797 96876079 -27200093 + L2a LINE L2 3074 3371 -55 6 1324 1617 291 86 25 chr9 96876138 96877379 -27198793 + L1MA5 LINE L1 4537 5931 -369 6 1324 419 112 12 0 chr9 96877650 96877730 -27198442 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1324 248 254 40 66 chr9 96877894 96877970 -27198202 - MIR SINE MIR -100 108 35 7 1324 378 0 0 0 chr9 96879283 96879325 -27196847 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1324 388 269 4 24 chr9 96879591 96879709 -27196463 - PB1D7 SINE Alu -30 118 3 7 1324 398 368 20 7 chr9 96879717 96879870 -27196302 + Tigger7 DNA MER2_type 2329 2483 -8 7 1324 284 287 29 38 chr9 96880358 96880463 -27195709 + MLT1J LTR MaLR 396 499 -13 7 1324 218 256 45 68 chr9 96880692 96880780 -27195392 + PB1 SINE Alu 42 127 0 7 1324 213 301 0 0 chr9 96881405 96881478 -27194694 + G-rich Low_complexity Low_complexity 6 78 0 7 1324 856 214 88 5 chr9 96887002 96887195 -27188977 + B3 SINE B2 1 209 -7 7 1324 21 0 0 0 chr9 96887197 96887218 -27188954 + AT_rich Low_complexity Low_complexity 1 21 0 7 1324 317 309 20 41 chr9 96888529 96888627 -27187545 + MER5A1 DNA MER1_type 36 131 -35 7 1324 315 0 0 0 chr9 96889035 96889070 -27187102 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1324 317 271 143 18 chr9 96889670 96889893 -27186279 - MIRb SINE MIR -10 258 7 7 1324 183 299 109 27 chr9 96890850 96890960 -27185212 - MIRb SINE MIR -33 235 117 7 1324 241 258 10 20 chr9 96891024 96891123 -27185049 + L1M5 LINE L1 5727 5824 -2058 7 1324 211 286 18 0 chr9 96892407 96892463 -27183709 + MIR SINE MIR 59 115 -147 7 1324 202 231 15 0 chr9 96892551 96892616 -27183556 + (TA)n Simple_repeat Simple_repeat 1 66 0 7 1324 1173 254 35 76 chr9 96894780 96895150 -27181022 - ORR1E LTR MaLR -4 355 1 7 1324 307 337 44 66 chr9 96895338 96895519 -27180653 + MER102c DNA MER1_type 36 212 -119 7 1324 250 273 219 32 chr9 96895718 96895873 -27180299 - MIR SINE MIR -44 224 41 7 1324 221 286 103 19 chr9 96897036 96897143 -27179029 - MIRc SINE MIR -147 121 6 7 1324 290 224 78 48 chr9 96897464 96897567 -27178605 + MIRb SINE MIR 107 212 -56 7 1324 2542 72 19 0 chr9 96898087 96898408 -27177764 + ORR1A2 LTR MaLR 1 327 0 7 1324 317 264 187 100 chr9 96898434 96898595 -27177577 + MTEb LTR MaLR 186 378 -1 7 1324 1191 312 76 21 chr9 96898586 96899060 -27177112 + MTEb-int LTR MaLR 4 503 -1077 7 1324 2908 123 39 8 chr9 96899064 96899546 -27176626 + Lx4B LINE L1 6276 6772 -286 7 1324 189 0 0 0 chr9 96899549 96899570 -27176602 + (CCTTG)n Simple_repeat Simple_repeat 3 23 0 7 1324 508 226 37 11 chr9 96899575 96899729 -27176443 + Lx4B LINE L1 6883 7052 -6 7 1324 699 271 67 10 chr9 96899736 96899930 -27176242 + MTE2b LTR MaLR 5 209 -170 7 1324 416 92 91 12 chr9 96899964 96900226 -27175946 + (CTCA)n Simple_repeat Simple_repeat 1 282 0 7 1324 460 222 208 7 chr9 96900238 96900392 -27175780 + MTE2b LTR MaLR 195 379 0 7 1324 1431 160 4 0 chr9 96900427 96900652 -27175520 - URR1A DNA MER1_type 0 226 1 7 1324 1350 310 56 108 chr9 96900795 96901635 -27174537 + MTEb-int LTR MaLR 735 1530 -50 7 1324 727 259 198 12 chr9 96901687 96901742 -27174430 - B4 SINE B4 -5 287 232 7 1324 337 39 19 19 chr9 96901742 96901794 -27174378 + (TTTG)n Simple_repeat Simple_repeat 3 54 0 7 1324 727 259 198 12 chr9 96901794 96901980 -27174192 - B4 SINE B4 -61 231 2 7 1324 509 166 92 10 chr9 96902072 96902214 -27173958 + MTE2a LTR MaLR 232 393 -26 7 1324 326 263 51 0 chr9 96902469 96902587 -27173585 + L1MC4 LINE L1 152 275 -6036 7 1324 945 123 0 0 chr9 96902870 96903049 -27173123 + (GA)n Simple_repeat Simple_repeat 2 180 0 7 1324 448 241 37 0 chr9 96903274 96903382 -27172790 + RSINE1 SINE B4 13 124 -41 7 1324 325 39 19 19 chr9 96903382 96903434 -27172738 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1324 381 362 61 73 chr9 96903650 96904142 -27172030 + L1MC4 LINE L1 2016 2501 -3714 7 1324 1273 27 0 0 chr9 96904601 96904747 -27171425 + B1_Mus2 SINE Alu 2 147 0 7 1324 243 0 0 0 chr9 96904747 96904774 -27171398 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1324 544 271 20 40 chr9 96904857 96905007 -27171165 - RSINE1 SINE B4 -17 148 2 7 1324 722 272 103 47 chr9 96905269 96905608 -27170564 + L1MC3 LINE L1 7365 7722 -63 7 1324 244 304 0 0 chr9 96905650 96905706 -27170466 - ID4 SINE ID 0 83 28 7 1324 1213 42 0 0 chr9 96905816 96905959 -27170213 + B1_Mus1 SINE Alu 3 145 -3 7 1324 872 157 21 0 chr9 96906261 96906401 -27169771 + B1_Mur2 SINE Alu 1 143 -6 7 1324 23 0 0 0 chr9 96906410 96906433 -27169739 + GC_rich Low_complexity Low_complexity 1 23 0 7 1324 219 296 42 34 chr9 96906452 96906571 -27169601 + PB1D9 SINE Alu 1 120 0 7 1324 761 137 8 0 chr9 96906904 96907035 -27169137 + (TTTC)n Simple_repeat Simple_repeat 1 132 0 7 1324 327 305 148 72 chr9 96907035 96907339 -27168833 + L1MC4 LINE L1 5514 5840 -2110 7 1324 387 0 0 0 chr9 96907368 96907411 -27168761 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1324 1084 232 90 81 chr9 96907411 96907721 -27168451 + ORR1E LTR MaLR 47 359 0 7 1324 473 250 50 0 chr9 96907723 96907823 -27168349 + ORR1E-int LTR MaLR 1 105 -1475 7 1324 1087 235 147 53 chr9 96907837 96908302 -27167870 + RMER4B LTR ERVK 19 585 0 7 1324 1338 271 48 30 chr9 96908325 96908684 -27167488 + ORR1E-int LTR MaLR 139 504 -1076 7 1324 1998 186 24 16 chr9 96908684 96909055 -27167117 + ORR1D1 LTR MaLR 1 374 0 7 1324 2303 259 156 22 chr9 96909055 96909748 -27166424 + ORR1E-int LTR MaLR 511 1298 -282 7 1324 335 318 80 31 chr9 96909732 96909894 -27166278 + MTE2b LTR MaLR 205 374 -5 7 1324 428 226 39 19 chr9 96910278 96910382 -27165790 + MTE-int LTR MaLR 914 1019 -561 7 1324 249 57 0 0 chr9 96910391 96910426 -27165746 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1324 182 225 75 0 chr9 96911265 96911305 -27164867 + L2c LINE L2 3134 3176 -211 7 1324 1165 69 7 0 chr9 96911453 96911598 -27164574 - B1_Mm SINE Alu 0 147 2 7 1324 306 279 9 88 chr9 96911882 96911996 -27164176 - L2b LINE L2 0 3375 3271 7 1324 527 209 19 0 chr9 96912837 96912942 -27163230 - PB1D9 SINE Alu 0 120 14 7 1324 1324 152 0 43 chr9 96914928 96915162 -27161010 + URR1A DNA MER1_type 1 224 -2 7 1324 333 291 26 0 chr9 96915603 96915720 -27160452 + B1_Mus1 SINE Alu 28 147 -1 7 1324 326 286 0 0 chr9 96916864 96916934 -27159238 + ID4_ SINE ID 4 73 -10 7 1324 246 271 0 17 chr9 96917568 96917628 -27158544 + G-rich Low_complexity Low_complexity 4 62 0 7 1324 297 348 113 41 chr9 96918109 96918410 -27157762 - MIRb SINE MIR -2 266 3 7 1324 196 289 0 81 chr9 96919687 96919811 -27156361 + L2b LINE L2 3054 3167 -208 7 1324 1039 230 0 9 chr9 96920787 96920814 -27155358 + B3 SINE B2 2 27 -189 7 1324 868 158 0 8 chr9 96920814 96920948 -27155224 + B1_Mus1 SINE Alu 1 133 -15 7 1324 360 0 0 0 chr9 96920950 96920990 -27155182 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 1324 1039 230 0 9 chr9 96920990 96921170 -27155002 + B3 SINE B2 28 207 -9 7 1324 236 257 28 14 chr9 96921699 96921770 -27154402 - RMER15 LTR ERVL -443 132 61 7 1324 555 335 72 52 chr9 96921932 96922408 -27153764 + MLT1F2 LTR MaLR 11 551 -9 7 1324 1565 47 5 20 chr9 96922618 96922813 -27153359 - B2_Mm2 SINE B2 -3 192 1 7 1324 2138 154 64 0 chr9 96922821 96923166 -27153006 - ORR1B2 LTR MaLR 0 367 1 7 1324 258 32 0 0 chr9 96923783 96923814 -27152358 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1324 195 322 55 44 chr9 96924024 96924115 -27152057 + L2b LINE L2 3116 3207 -168 7 1324 188 211 100 50 chr9 96924129 96924189 -27151983 + L2b LINE L2 3269 3331 -56 7 1324 195 42 0 0 chr9 96924364 96924388 -27151784 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1324 199 377 0 49 chr9 96924428 96924509 -27151663 + L2b LINE L2 3269 3345 -30 7 1324 242 302 25 147 chr9 96924744 96924907 -27151265 - RMER21B LTR ERV1 -46 901 759 7 1324 770 212 141 52 chr9 96924912 96925181 -27150991 - RMER21B LTR ERV1 -275 567 275 7 1324 963 189 69 57 chr9 96925231 96925477 -27150695 - ORR1D1 LTR MaLR -41 333 85 7 1324 362 260 69 20 chr9 96925477 96925579 -27150593 - RLTR23 LTR ERV1 0 430 324 7 1324 371 272 12 12 chr9 96926014 96926096 -27150076 - ORR1D1 LTR MaLR -290 84 3 7 1324 459 0 0 0 chr9 96926096 96926147 -27150025 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 7 1324 545 286 47 13 chr9 96926240 96926389 -27149783 + MTE2b LTR MaLR 3 156 -223 7 1324 216 0 0 0 chr9 96926481 96926505 -27149667 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1324 1242 48 0 0 chr9 96926885 96927032 -27149140 + B1_Mus2 SINE Alu 1 147 0 7 1324 204 111 0 0 chr9 96927032 96927068 -27149104 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1324 762 201 176 29 chr9 96927100 96927310 -27148862 + MTE2b LTR MaLR 139 379 0 7 1324 367 256 52 74 chr9 96927310 96927356 -27148816 + MTE2b-int LTR MaLR 1 50 -1530 7 1324 1293 108 32 0 chr9 96927356 96927542 -27148630 - B2_Mm2 SINE B2 -2 193 2 7 1324 367 256 52 74 chr9 96927542 96927630 -27148542 + MTE2b-int LTR MaLR 51 132 -1448 7 1324 2262 181 94 87 chr9 96927659 96928214 -27147958 - RMER15 LTR ERVL -16 559 1 7 1324 823 258 158 19 chr9 96928214 96928478 -27147694 + MTE2b-int LTR MaLR 128 428 -1152 7 1324 1211 68 0 0 chr9 96928496 96928643 -27147529 - B1_Mm SINE Alu 0 147 1 7 1324 431 248 108 8 chr9 96928703 96928833 -27147339 + MTE2b-int LTR MaLR 604 746 -834 7 1324 1701 259 167 15 chr9 96928862 96929384 -27146788 + MTE2b-int LTR MaLR 813 1413 -167 7 1324 186 329 52 13 chr9 96929633 96929710 -27146462 + MIRb SINE MIR 131 210 -58 7 1324 2155 181 18 18 chr9 96929857 96930246 -27145926 + ORR1B1 LTR MaLR 1 389 -5 7 1324 327 252 0 17 chr9 96930556 96930672 -27145500 - L1MD LINE L1 -2261 3885 3774 7 1324 447 306 62 68 chr9 96930901 96931049 -27145123 - L1MD LINE L1 -2438 3708 3558 7 1324 528 254 7 60 chr9 96931049 96931200 -27144972 + B1_Mur1 SINE Alu 2 144 -5 7 1324 447 306 62 68 chr9 96931200 96931244 -27144928 - L1MD LINE L1 -2589 3557 3519 7 1324 3786 84 80 6 chr9 96931244 96931772 -27144400 + RMER2 LTR ERV1 1 567 0 7 1324 447 306 62 68 chr9 96931772 96932016 -27144156 - L1MD LINE L1 -2628 3518 3274 7 1324 434 202 0 38 chr9 96932065 96932250 -27143922 + CT-rich Low_complexity Low_complexity 2 179 0 7 1324 290 245 61 10 chr9 96932279 96932378 -27143794 - L1MD LINE L1 -2897 3249 3146 7 1324 566 289 111 11 chr9 96932379 96932740 -27143432 - L1MEc LINE L1 -3080 3239 2843 7 1324 700 54 0 11 chr9 96932895 96932988 -27143184 - ORR1A2 LTR MaLR -8 386 295 7 1324 2104 80 18 66 chr9 96932992 96933046 -27143126 - ORR1A2 LTR MaLR -9 318 272 7 1324 1534 33 22 0 chr9 96933046 96933228 -27142944 - B2_Mm1a SINE B2 -6 187 2 7 1324 2104 80 18 66 chr9 96933228 96933507 -27142665 - ORR1A2 LTR MaLR -56 271 1 7 1324 1224 178 122 51 chr9 96933507 96933762 -27142410 - ORR1B2 LTR MaLR -94 273 1 7 1324 393 303 62 11 chr9 96933776 96934050 -27142122 - L1MEc LINE L1 -3749 2570 2283 7 1324 464 261 119 30 chr9 96934110 96934244 -27141928 - ID_B1 SINE B4 0 224 79 7 1324 706 228 94 6 chr9 96934268 96934449 -27141723 - B3 SINE B2 -19 197 1 7 1324 243 146 0 0 chr9 96934635 96934676 -27141496 + (TCC)n Simple_repeat Simple_repeat 2 42 0 7 1324 602 150 19 29 chr9 96934676 96934779 -27141393 - B1_Mur2 SINE Alu -6 143 42 7 1324 248 184 82 0 chr9 96934826 96934973 -27141199 + CT-rich Low_complexity Low_complexity 6 164 0 7 1324 269 200 54 18 chr9 96934975 96935031 -27141141 - B1_Mus2 SINE Alu -89 58 1 8 1324 235 163 39 39 chr9 96934996 96935047 -27141125 - MT2B2 LTR ERVL -292 292 242 8 1324 246 32 0 0 chr9 96935074 96935105 -27141067 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1324 410 284 111 40 chr9 96935178 96935574 -27140598 - L1MEc LINE L1 -5156 1244 821 7 1324 416 19 19 0 chr9 96935588 96935641 -27140531 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 8 1324 1181 68 7 0 chr9 96935641 96935787 -27140385 - B1_Mm SINE Alu 0 147 1 8 1324 306 305 68 11 chr9 96935919 96936095 -27140077 - L1MEc LINE L1 -5958 442 257 7 1324 243 248 88 71 chr9 96936491 96936537 -27139635 - MLT1I LTR MaLR -14 397 354 8 1324 1801 168 61 233 chr9 96936537 96937181 -27138991 - RMER16 LTR ERVK 0 533 1 8 1324 243 248 88 71 chr9 96937181 96937247 -27138925 - MLT1I LTR MaLR -58 353 283 8 1324 250 260 37 49 chr9 96938171 96938252 -27137920 - MIRb SINE MIR -141 127 48 8 1324 1413 52 6 6 chr9 96939354 96939529 -27136643 + B2_Mm2 SINE B2 2 176 -19 8 1324 36 0 0 0 chr9 96939603 96939639 -27136533 + AT_rich Low_complexity Low_complexity 1 36 0 8 1324 1217 62 0 0 chr9 96939639 96939785 -27136387 - B1_Mm SINE Alu 0 147 2 8 1324 1346 108 16 0 chr9 96939797 96939982 -27136190 - B2_Mm2 SINE B2 -5 190 3 8 1324 630 0 0 0 chr9 96940865 96940935 -27135237 + (CTG)n Simple_repeat Simple_repeat 3 72 0 8 1324 332 43 22 0 chr9 96941317 96941363 -27134809 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 8 1324 653 261 0 7 chr9 96941422 96941565 -27134607 - B1F1 SINE Alu -7 142 1 8 1324 531 43 0 0 chr9 96941956 96942026 -27134146 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1324 486 0 0 0 chr9 96942030 96942084 -27134088 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1324 1358 84 10 35 chr9 96942445 96942642 -27133530 - B2_Mm1t SINE B2 0 193 2 8 1324 419 313 30 18 chr9 96943437 96943606 -27132566 + L1MC4 LINE L1 6704 6874 -1168 8 1324 862 233 24 72 chr9 96943742 96943950 -27132222 + B3A SINE B2 1 198 0 8 1324 2106 86 18 52 chr9 96944460 96944745 -27131427 + RLTR31B_Mm LTR ERVK 1 286 -271 8 1324 1428 101 21 0 chr9 96944745 96944933 -27131239 + B2_Mm2 SINE B2 2 193 -2 8 1324 2106 134 95 75 chr9 96944933 96945091 -27131081 + RLTR31B_Mm LTR ERVK 287 557 0 8 1324 558 255 121 132 chr9 96945183 96945563 -27130609 - ORSL-2b DNA Tip100 0 508 133 8 1324 612 257 65 19 chr9 96946271 96946458 -27129714 + B3A SINE B2 1 186 -9 8 1324 27 49 0 0 chr9 96946935 96946976 -27129196 + AT_rich Low_complexity Low_complexity 1 41 0 8 1324 298 291 12 25 chr9 96946990 96947071 -27129101 - RSINE1 SINE B4 -83 82 3 8 1324 258 304 80 25 chr9 96947138 96947300 -27128872 + L1MD LINE L1 2597 2767 -3379 8 1324 417 54 0 0 chr9 96947323 96947379 -27128793 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 1324 242 292 62 0 chr9 96947379 96947492 -27128680 + L1MC LINE L1 2804 2923 -3223 8 1324 275 81 0 101 chr9 96947651 96947687 -27128485 + T-rich Low_complexity Low_complexity 28 62 0 8 1324 1189 35 35 0 chr9 96947687 96947829 -27128343 - B1_Mus2 SINE Alu 0 147 1 8 1324 275 81 0 101 chr9 96947829 96947861 -27128311 + T-rich Low_complexity Low_complexity 1 27 0 8 1324 305 270 143 50 chr9 96948031 96948269 -27127903 - RMER15 LTR ERVL -16 559 300 8 1324 422 274 24 84 chr9 96948401 96948568 -27127604 + ORR1E LTR MaLR 25 181 -178 8 1324 307 229 35 35 chr9 96948688 96948774 -27127398 + ORR1E LTR MaLR 280 365 -14 8 1324 585 255 129 128 chr9 96948800 96949161 -27127011 + L1M5 LINE L1 3351 3747 -2399 8 1324 1066 202 33 24 chr9 96949161 96949374 -27126798 + B3 SINE B2 1 215 -1 8 1324 585 255 129 128 chr9 96949374 96949456 -27126716 + L1M5 LINE L1 3748 3813 -2333 8 1324 554 167 50 42 chr9 96949456 96949575 -27126597 + PB1D7 SINE Alu 1 120 0 8 1324 585 282 115 118 chr9 96949575 96949930 -27126242 + L1M5 LINE L1 3814 4150 -1996 8 1324 776 191 6 0 chr9 96949930 96950108 -27126064 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1324 594 218 0 27 chr9 96950077 96950261 -27125911 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 8 1324 549 215 17 11 chr9 96950275 96950449 -27125723 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 8 1324 320 231 0 0 chr9 96950450 96950515 -27125657 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1324 337 301 93 31 chr9 96950869 96951057 -27125115 + MIRb SINE MIR 7 200 -68 8 1324 396 0 0 0 chr9 96951478 96951522 -27124650 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1324 1404 96 17 0 chr9 96952289 96952467 -27123705 - B2_Mm2 SINE B2 -11 184 4 8 1324 3535 55 7 14 chr9 96952481 96952920 -27123252 - L1Md_F2 LINE L1 0 6582 6147 8 1324 231 279 215 38 chr9 96953369 96953555 -27122617 + MLT1K LTR MaLR 90 308 -287 8 1324 300 335 28 42 chr9 96954057 96954269 -27121903 + Lx9 LINE L1 7254 7462 -182 8 1324 328 295 88 73 chr9 96954933 96955138 -27121034 - L1MC5 LINE L1 -740 7221 7014 8 1324 950 269 31 9 chr9 96955197 96955422 -27120750 + B4A SINE B4 2 231 -61 8 1324 470 108 0 0 chr9 96955422 96955487 -27120685 - L1_Mur2 LINE L1 -635 5242 5178 8 1324 2284 117 44 52 chr9 96955487 96955849 -27120323 + Lx4A LINE L1 6692 7050 -8 8 1324 322 154 0 0 chr9 96955874 96955926 -27120246 + B4A SINE B4 216 267 -25 8 1324 274 272 51 84 chr9 96956035 96956260 -27119912 - L1MC5 LINE L1 -1030 7012 6710 8 1324 225 351 47 35 chr9 96956660 96956831 -27119341 - MIR SINE MIR -71 197 25 8 1324 550 284 116 86 chr9 96956900 96957340 -27118832 + MLT1J LTR MaLR 8 460 -52 8 1324 697 266 21 0 chr9 96957381 96957569 -27118603 + ID_B1 SINE B4 2 193 -31 8 1324 395 200 124 21 chr9 96957767 96957864 -27118308 - Tigger5 DNA MER2_type 0 2406 2300 8 1324 348 336 13 107 chr9 96957900 96958085 -27118087 - Tigger5 DNA MER2_type -2195 211 44 8 1324 385 231 65 124 chr9 96958085 96958238 -27117934 + B1F1 SINE Alu 4 147 -2 8 1324 348 336 13 107 chr9 96958238 96958285 -27117887 - Tigger5 DNA MER2_type -2363 43 1 8 1324 2725 44 19 0 chr9 96958580 96958901 -27117271 + L1Md_F3 LINE L1 6258 6584 0 8 1324 408 374 76 19 chr9 96958967 96959283 -27116889 - MER20B DNA MER1_type -188 595 262 8 1324 737 142 70 16 chr9 96960005 96960134 -27116038 - B1_Mus2 SINE Alu -7 140 5 8 1324 495 87 0 0 chr9 96960279 96960348 -27115824 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1324 433 244 93 36 chr9 96961572 96961712 -27114460 - B1F SINE Alu -1 148 1 8 1324 26 0 0 0 chr9 96962096 96962122 -27114050 + AT_rich Low_complexity Low_complexity 1 26 0 8 1324 501 259 90 7 chr9 96962193 96962337 -27113835 + RSINE1 SINE B4 6 161 -4 8 1324 1273 48 0 0 chr9 96962480 96962625 -27113547 + B1_Mm SINE Alu 3 147 0 8 1324 234 43 20 60 chr9 96962883 96962933 -27113239 + (CAAAAA)n Simple_repeat Simple_repeat 3 50 0 8 1324 2120 126 60 24 chr9 96962997 96963379 -27112793 - RLTR11B LTR ERVK -10 443 48 8 1324 3271 122 103 2 chr9 96963379 96963894 -27112278 + RMER2 LTR ERV1 1 567 0 8 1324 396 251 75 75 chr9 96963895 96964149 -27112023 - L1MD LINE L1 -2628 3518 3265 8 1324 664 167 122 7 chr9 96964203 96964342 -27111830 + RMER2 LTR ERV1 372 526 -41 8 1324 1323 231 138 19 chr9 96964377 96964739 -27111433 - MTD LTR MaLR -14 405 1 8 1324 794 296 158 37 chr9 96964956 96965360 -27110812 - MLT1D LTR MaLR -25 480 28 8 1324 597 315 74 22 chr9 96966431 96967164 -27109008 - L1M5 LINE L1 -468 5772 4993 8 1324 473 245 19 0 chr9 96967327 96967433 -27108739 - PB1D10 SINE Alu -5 112 5 8 1324 505 230 157 36 chr9 96967642 96967820 -27108352 - B4A SINE B4 -10 282 1 8 1324 301 269 131 28 chr9 96967864 96968009 -27108163 - L1M5 LINE L1 -2213 3933 3774 8 1324 741 273 6 6 chr9 96968041 96968214 -27107958 + B3A SINE B2 4 176 -22 8 1324 612 225 78 0 chr9 96968245 96968374 -27107798 + B1F SINE Alu 6 144 -5 8 1324 247 362 51 17 chr9 96968741 96968918 -27107254 - MLT1J LTR MaLR -106 406 224 8 1324 263 284 74 0 chr9 96969121 96969202 -27106970 + HERV16-int LTR ERVL 469 555 -4441 8 1324 1749 26 0 5 chr9 96970190 96970383 -27105789 + B2_Mm1a SINE B2 2 193 0 8 1324 189 0 0 0 chr9 96970421 96970442 -27105730 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1324 1741 36 0 0 chr9 96970700 96970892 -27105280 - B2_Mm1t SINE B2 0 193 2 8 1324 365 179 84 79 chr9 96971140 96971286 -27104886 - L1MC LINE L1 -3189 2951 2808 8 1324 261 0 0 0 chr9 96971428 96971457 -27104715 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1324 429 260 27 63 chr9 96971527 96971638 -27104534 - B3 SINE B2 -14 202 96 8 1324 390 95 176 0 chr9 96971655 96971729 -27104443 - PB1D9 SINE Alu 0 120 34 8 1324 306 137 0 19 chr9 96971737 96971789 -27104383 - B2_Mm2 SINE B2 -140 55 5 8 1324 699 300 57 28 chr9 96972142 96972564 -27103608 + L1M2 LINE L1 2829 3262 -2881 8 1324 747 108 0 0 chr9 96972576 96972687 -27103485 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 8 1324 670 174 0 42 chr9 96972706 96972826 -27103346 + B1_Mur4 SINE Alu 36 150 0 8 1324 1135 256 192 2 chr9 96972827 96973312 -27102860 + L1_Mur3 LINE L1 3250 3826 -2054 8 1324 414 258 80 32 chr9 96973407 96973595 -27102577 + L1_Mur3 LINE L1 4050 4246 -1634 8 1324 1397 66 49 6 chr9 96973596 96973779 -27102393 + B2_Mm2 SINE B2 2 192 -3 8 1324 1454 28 84 6 chr9 96973865 96974043 -27102129 + B2_Mm1a SINE B2 2 193 0 8 1324 198 0 0 0 chr9 96974045 96974067 -27102105 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1324 356 240 95 100 chr9 96974079 96974164 -27102008 + L1_Mur3 LINE L1 4236 4322 -1558 8 1324 1413 98 5 5 chr9 96974164 96974349 -27101823 + B2_Mm1a SINE B2 2 186 -7 8 1324 356 240 95 100 chr9 96974349 96974453 -27101719 + L1_Mur3 LINE L1 4323 4424 -1456 8 1324 1588 211 120 53 chr9 96974495 96974592 -27101580 - RLTR11A2 LTR ERVK -3 524 425 8 1324 1278 108 32 0 chr9 96974592 96974777 -27101395 + B2_Mm1t SINE B2 1 191 -2 8 1324 1588 211 120 53 chr9 96974777 96975170 -27101002 - RLTR11A2 LTR ERVK -103 424 1 8 1324 508 273 86 13 chr9 96975403 96975555 -27100617 - RSINE1 SINE B4 0 165 3 8 1324 247 293 24 0 chr9 96976783 96976865 -27099307 + ID_B1 SINE B4 86 169 -55 8 1324 220 277 107 19 chr9 96976865 96976886 -27099286 + PB1D10 SINE Alu 5 116 -1 8 1324 189 0 0 0 chr9 96979682 96979703 -27096469 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 8 1324 1274 34 0 7 chr9 96979707 96979854 -27096318 - B1_Mus2 SINE Alu 0 147 2 9 1324 21 0 0 0 chr9 96980131 96980152 -27096020 + AT_rich Low_complexity Low_complexity 1 21 0 9 1324 1786 21 0 0 chr9 96980285 96980474 -27095698 - B2_Mm1a SINE B2 -3 190 2 9 1324 716 161 0 25 chr9 96981185 96981306 -27094866 + B1_Mur1 SINE Alu 32 149 0 9 1324 1554 49 5 27 chr9 96981361 96981548 -27094624 - B2_Mm1a SINE B2 -9 184 2 9 1324 659 216 273 5 chr9 96981751 96981960 -27094212 + ORR1D-int LTR MaLR 237 501 -869 9 1324 3513 92 19 4 chr9 96981979 96982457 -27093715 - Lx2 LINE L1 -2 6995 6511 9 1324 771 145 47 74 chr9 96982495 96982644 -27093528 + B1_Mur4 SINE Alu 1 145 -5 9 1324 485 215 168 89 chr9 96982654 96982833 -27093339 + B2_Mm2 SINE B2 3 195 0 9 1324 366 268 0 0 chr9 96982825 96982907 -27093265 + ORR1D-int LTR MaLR 512 593 -777 9 1324 229 49 30 6 chr9 96982943 96982985 -27093187 + MLT2D LTR ERVL 529 560 0 9 1324 392 92 701 0 chr9 96983205 96983292 -27092880 + B1_Mus1 SINE Alu 1 148 0 9 1324 660 292 29 37 chr9 96983779 96984024 -27092148 + Lx8 LINE L1 6486 6728 -745 9 1324 354 296 118 7 chr9 96984427 96984563 -27091609 + Lx8 LINE L1 6847 6997 -476 9 1324 25 31 0 0 chr9 96985093 96985125 -27091047 + AT_rich Low_complexity Low_complexity 1 32 0 9 1324 832 176 78 22 chr9 96985125 96985305 -27090867 + B2_Mm2 SINE B2 3 192 -3 9 1324 515 167 163 67 chr9 96985320 96985455 -27090717 + B1F SINE Alu 1 148 -1 9 1324 23 0 0 0 chr9 96985952 96985975 -27090197 + AT_rich Low_complexity Low_complexity 1 23 0 9 1324 245 319 14 0 chr9 96987165 96987237 -27088935 - ID SINE ID -151 73 1 9 1324 22 0 0 0 chr9 96988198 96988220 -27087952 + AT_rich Low_complexity Low_complexity 1 22 0 9 1324 24 32 0 0 chr9 96988521 96988552 -27087620 + AT_rich Low_complexity Low_complexity 1 31 0 9 1324 1143 83 6 6 chr9 96988555 96988713 -27087459 + B2_Mm2 SINE B2 1 158 -37 9 1324 192 77 0 0 chr9 96988714 96988740 -27087432 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 1324 234 0 0 0 chr9 96991246 96991272 -27084900 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1325 677 269 55 18 chr9 96994368 96994531 -27081641 - B3 SINE B2 -47 169 1 9 1325 346 258 0 51 chr9 96994588 96994611 -27081561 + PB1D10 SINE Alu 23 45 -72 9 1325 2108 166 70 3 chr9 96994611 96994980 -27081192 + ORR1B1 LTR MaLR 1 394 0 9 1325 346 258 0 51 chr9 96994980 96995054 -27081118 + PB1D10 SINE Alu 46 115 -2 9 1325 702 104 16 13 chr9 96995345 96995479 -27080693 + B2_Mm2 SINE B2 51 185 -8 9 1325 302 225 99 0 chr9 96995666 96995737 -27080435 + PB1D9 SINE Alu 33 110 -10 9 1325 279 0 0 0 chr9 96995739 96995770 -27080402 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 9 1325 632 309 67 0 chr9 96995836 96996001 -27080171 + B3A SINE B2 1 176 -22 9 1325 688 268 26 23 chr9 96996299 96996493 -27079679 + B3A SINE B2 20 201 -15 9 1325 231 103 0 0 chr9 96996526 96996565 -27079607 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1325 289 321 68 68 chr9 96996566 96996683 -27079489 - RSINE1 SINE B4 -40 125 9 9 1325 300 250 39 59 chr9 96997044 96997146 -27079026 + PB1D10 SINE Alu 17 116 -1 9 1325 461 325 19 25 chr9 96997805 96997966 -27078206 + RSINE1 SINE B4 4 163 -2 9 1325 639 269 15 0 chr9 96997995 96998125 -27078047 + B1F SINE Alu 1 132 -17 9 1325 248 263 79 30 chr9 96998256 96998367 -27077805 - B1_Mur1 SINE Alu -1 148 2 9 1325 1211 61 0 7 chr9 96998573 96998721 -27077451 + B1_Mus2 SINE Alu 1 147 0 9 1325 488 222 169 8 chr9 96998951 96999069 -27077103 + B1_Mur2 SINE Alu 11 147 -2 9 1325 610 159 161 63 chr9 96999251 96999425 -27076747 + B2_Mm2 SINE B2 1 191 -4 9 1325 1039 151 7 0 chr9 96999710 96999856 -27076316 - B1_Mur3 SINE Alu 0 149 3 9 1325 283 316 50 43 chr9 97000052 97000191 -27075981 + B1_Mur1 SINE Alu 10 149 0 1 1325 1129 65 0 0 chr9 97000837 97000975 -27075197 + B1_Mus2 SINE Alu 1 138 -9 2 1325 1342 95 16 11 chr9 97001293 97001484 -27074688 + B2_Mm2 SINE B2 1 192 -3 3 1325 257 207 57 68 chr9 97001816 97001904 -27074268 + B4A SINE B4 33 119 -173 4 1325 317 248 126 43 chr9 97002307 97002434 -27073738 + L1MD LINE L1 5117 5251 -895 5 1325 605 299 128 20 chr9 97002603 97003040 -27073132 + L1ME1 LINE L1 5555 6037 -142 6 1325 600 292 100 62 chr9 97003160 97003224 -27072948 + Lx8 LINE L1 7115 7168 -305 7 1325 2549 147 2 56 chr9 97003224 97003274 -27072898 - L1Md_F3 LINE L1 0 6584 6550 8 1325 1032 69 0 0 chr9 97003274 97003404 -27072768 - B1_Mm SINE Alu -16 131 2 9 1325 2549 147 2 56 chr9 97003404 97003835 -27072337 - L1Md_F3 LINE L1 -35 6549 6129 8 1325 600 292 100 62 chr9 97003835 97004109 -27072063 + Lx8 LINE L1 7169 7466 -7 7 1325 1558 220 35 43 chr9 97004127 97004549 -27071623 + MTD LTR MaLR 1 419 0 1 1325 270 0 0 0 chr9 97005008 97005038 -27071134 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 1 1325 1461 55 0 16 chr9 97005038 97005216 -27070956 - B2_Mm2 SINE B2 -18 177 1 1 1325 420 279 77 8 chr9 97005399 97005529 -27070643 + ID_B1 SINE B4 84 222 -2 1 1325 271 256 77 11 chr9 97005679 97005770 -27070402 + B1F1 SINE Alu 53 149 0 1 1325 1175 68 0 0 chr9 97005776 97005923 -27070249 + B1_Mus2 SINE Alu 1 147 0 1 1325 312 27 0 0 chr9 97005923 97005960 -27070212 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1325 302 208 27 25 chr9 97006166 97006261 -27069911 + B1_Mur1 SINE Alu 32 149 0 1 1325 583 328 56 0 chr9 97006742 97006922 -27069250 + B3 SINE B2 1 190 -26 1 1325 243 0 0 0 chr9 97006922 97006949 -27069223 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 1325 411 106 0 0 chr9 97006949 97007014 -27069158 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1325 233 240 0 13 chr9 97007127 97007203 -27068969 + GA-rich Low_complexity Low_complexity 5 79 0 2 1325 1201 48 0 0 chr9 97007530 97007675 -27068497 + B1_Mus2 SINE Alu 2 146 -1 2 1325 638 290 131 17 chr9 97007789 97008080 -27068092 + MLT1A0 LTR MaLR 33 356 -9 2 1325 802 171 7 28 chr9 97008130 97008274 -27067898 + B1_Mus1 SINE Alu 3 143 -5 2 1325 196 213 33 0 chr9 97008274 97008335 -27067837 + GA-rich Low_complexity Low_complexity 3 65 0 2 1325 339 130 0 0 chr9 97008418 97008472 -27067700 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1325 21 0 0 0 chr9 97008505 97008526 -27067646 + AT_rich Low_complexity Low_complexity 1 21 0 2 1325 1179 48 7 0 chr9 97009992 97010137 -27066035 + B1_Mus1 SINE Alu 3 148 0 2 1325 504 0 0 0 chr9 97010853 97010909 -27065263 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 2 1325 237 212 131 131 chr9 97012028 97012158 -27064014 - B1_Mur2 SINE Alu 0 149 20 3 1325 992 78 14 21 chr9 97013046 97013189 -27062983 + B1_Mus1 SINE Alu 1 142 -6 3 1325 747 0 0 0 chr9 97013190 97013273 -27062899 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 1325 270 0 0 0 chr9 97013273 97013302 -27062870 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1325 736 281 39 39 chr9 97013303 97013614 -27062558 - L1MB7 LINE L1 -69 6115 5805 3 1325 1114 82 0 0 chr9 97014393 97014540 -27061632 - B1_Mus1 SINE Alu 0 148 2 3 1325 1251 233 50 12 chr9 97014615 97014958 -27061214 - ORR1D2 LTR MaLR -14 356 1 3 1325 272 158 0 17 chr9 97015004 97015062 -27061110 + CT-rich Low_complexity Low_complexity 1 57 0 3 1325 569 218 12 208 chr9 97015067 97015322 -27060850 - ID_B1 SINE B4 -18 206 2 3 1325 245 339 41 0 chr9 97015540 97015661 -27060511 - L1MA10 LINE L1 -18 6316 6191 3 1325 207 0 0 0 chr9 97015881 97015904 -27060268 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 4 1325 1084 80 0 0 chr9 97015917 97016055 -27060117 - B1_Mus2 SINE Alu -9 138 1 4 1325 339 352 84 0 chr9 97016160 97016373 -27059799 - MIR SINE MIR -30 232 2 4 1325 198 71 0 0 chr9 97016838 97016866 -27059306 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1325 229 234 13 25 chr9 97016868 97016947 -27059225 - Lx7 LINE L1 -8 7688 7611 4 1325 2452 92 6 0 chr9 97016947 97017272 -27058900 - ORR1A2 LTR MaLR 0 327 1 4 1325 10111 127 60 93 chr9 97017272 97018171 -27058001 - ORR1A2-int LTR MaLR 0 1963 1042 4 1325 513 0 0 0 chr9 97018171 97018228 -27057944 + (CTG)n Simple_repeat Simple_repeat 2 58 0 4 1325 10111 127 60 93 chr9 97018228 97018242 -27057930 - ORR1A3-int LTR MaLR -922 1041 1041 4 1325 1452 44 0 0 chr9 97018242 97018422 -27057750 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1325 10111 127 60 93 chr9 97018422 97018576 -27057596 - ORR1A3-int LTR MaLR -922 1041 1041 4 1325 1159 70 0 0 chr9 97018576 97018718 -27057454 - B1_Mus1 SINE Alu -6 142 1 4 1325 10111 127 60 93 chr9 97018718 97019679 -27056493 - ORR1A2-int LTR MaLR -922 1041 1 4 1325 1466 101 66 0 chr9 97019679 97019907 -27056265 - ORR1A2 LTR MaLR 0 327 85 4 1325 763 270 5 18 chr9 97019905 97020113 -27056059 - MTE-int LTR MaLR -1285 295 89 5 1325 1500 64 391 0 chr9 97020113 97020348 -27055824 - ORR1A2 LTR MaLR 0 327 1 5 1325 763 68 24822 0 chr9 97020348 97020421 -27055751 - MTE-int LTR MaLR -1492 88 81 5 1325 4451 172 64 4 chr9 97020422 97021303 -27054869 - MERVL_2A-int LTR ERVL -2848 2913 1892 5 1325 7026 188 67 89 chr9 97021302 97022262 -27053910 - MERVL_2A-int LTR ERVL -4059 1702 700 5 1325 1136 125 130 0 chr9 97022262 97022462 -27053710 + URR1A DNA MER1_type 1 226 0 5 1325 7026 188 67 89 chr9 97022462 97022890 -27053282 - MERVL_2A-int LTR ERVL -5062 699 310 5 1325 213 236 0 154 chr9 97022890 97022903 -27053269 + ID SINE ID 79 81 -143 5 1325 271 271 0 0 chr9 97022903 97022962 -27053210 + B1_Mus2 SINE Alu 1 59 -88 5 1325 7026 188 67 89 chr9 97022962 97023015 -27053157 - MERVL_2A-int LTR ERVL -5062 309 260 5 1325 1167 139 5 44 chr9 97023015 97023218 -27052954 + B2_Mm2 SINE B2 1 195 0 5 1325 7026 188 67 89 chr9 97023218 97023437 -27052735 - MERVL_2A-int LTR ERVL -5502 259 8 5 1325 987 58 7 0 chr9 97023523 97023660 -27052512 + B1_Mus1 SINE Alu 10 147 -1 5 1325 24 0 0 0 chr9 97023660 97023684 -27052488 + AT_rich Low_complexity Low_complexity 1 24 0 5 1325 1025 211 9 8 chr9 97023687 97024009 -27052163 - MT2A LTR ERVL -73 460 92 5 1325 192 40 0 0 chr9 97024085 97024110 -27052062 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 6 1325 320 224 0 0 chr9 97024180 97024247 -27051925 - MT2A LTR ERVL -466 67 1 5 1325 197 0 0 67 chr9 97024358 97024388 -27051784 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 6 1325 324 0 0 0 chr9 97024393 97024429 -27051743 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1325 417 301 46 78 chr9 97024584 97024890 -27051282 + RLTR26 LTR ERVK 169 464 -178 6 1325 597 233 25 45 chr9 97025053 97025251 -27050921 + L1MB4 LINE L1 5377 5570 -610 6 1325 592 292 108 95 chr9 97025272 97025734 -27050438 + L1MB4 LINE L1 5623 6101 -79 6 1325 345 109 0 0 chr9 97025739 97025794 -27050378 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1325 375 23 0 0 chr9 97025804 97025848 -27050324 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1325 258 232 29 14 chr9 97025848 97025918 -27050254 - ID4_ SINE ID -11 72 2 6 1325 440 250 42 42 chr9 97025923 97026065 -27050107 - B1F SINE Alu -7 142 1 6 1325 267 279 0 0 chr9 97026067 97026153 -27050019 + L1MB4 LINE L1 6093 6178 -2 6 1325 198 167 0 0 chr9 97026324 97026360 -27049812 + A-rich Low_complexity Low_complexity 1 36 0 6 1325 316 271 141 24 chr9 97026360 97026530 -27049642 + L1MB4 LINE L1 5935 6124 -56 7 1325 1133 111 123 100 chr9 97026754 97026933 -27049239 + URR1A DNA MER1_type 1 204 -22 7 1325 1250 28 0 0 chr9 97026933 97027077 -27049095 + B1_Mm SINE Alu 1 144 -3 7 1325 495 14 42 0 chr9 97027077 97027149 -27049023 + (CAAAA)n Simple_repeat Simple_repeat 2 76 0 7 1325 1133 111 123 100 chr9 97027149 97027188 -27048984 + URR1A DNA MER1_type 205 224 -2 7 1325 369 273 45 15 chr9 97027394 97027528 -27048644 + B3 SINE B2 70 207 -9 7 1325 595 267 15 15 chr9 97027505 97027638 -27048534 + RSINE1 SINE B4 8 140 -25 7 1325 183 42 0 0 chr9 97027638 97027662 -27048510 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1325 2087 144 143 8 chr9 97027665 97028035 -27048137 - MTC LTR MaLR 0 421 2 7 1325 585 298 6 12 chr9 97028076 97028239 -27047933 + B3A SINE B2 1 162 -36 7 1325 26 0 0 0 chr9 97028249 97028275 -27047897 + AT_rich Low_complexity Low_complexity 1 26 0 7 1325 2278 64 54 60 chr9 97028316 97028647 -27047525 - ORR1A4 LTR MaLR 0 329 1 8 1325 238 196 18 0 chr9 97029014 97029070 -27047102 + PB1 SINE Alu 54 110 -17 8 1325 22 35 0 0 chr9 97029119 97029148 -27047024 + AT_rich Low_complexity Low_complexity 1 29 0 8 1325 904 84 238 31 chr9 97029219 97029379 -27046793 - B2_Mm2 SINE B2 -1 194 2 8 1325 500 185 148 49 chr9 97029379 97029521 -27046651 - Lx5 LINE L1 0 7050 6895 8 1325 1604 128 17 13 chr9 97029483 97029720 -27046452 + Lx5 LINE L1 6419 6656 -394 8 1325 889 194 32 16 chr9 97029742 97029931 -27046241 - B3 SINE B2 0 216 25 8 1325 588 53 0 0 chr9 97030021 97030097 -27046075 + (TTTTC)n Simple_repeat Simple_repeat 4 79 0 8 1325 836 197 287 10 chr9 97030933 97031236 -27044936 - ORR1B2-int LTR MaLR -1122 387 1 8 1325 367 176 108 0 chr9 97031236 97031310 -27044862 - ORR1B2 LTR MaLR 0 378 297 8 1325 1897 152 28 96 chr9 97031310 97031554 -27044618 - MTB_Mm LTR MaLR 0 407 188 8 1325 2708 98 10 3 chr9 97031554 97031945 -27044227 - Lx LINE L1 -3 6651 6258 9 1325 1897 152 28 96 chr9 97031945 97032137 -27044035 - MTB_Mm LTR MaLR -220 187 1 8 1325 1221 199 86 4 chr9 97032137 97032404 -27043768 - ORR1B2 LTR MaLR -78 289 1 8 1325 254 192 0 0 chr9 97032435 97032487 -27043685 + L1MD LINE L1 2330 2381 -3765 9 1325 255 253 26 13 chr9 97032626 97032702 -27043470 + RLTR20B3 LTR ERVK 501 577 0 9 1325 251 286 76 25 chr9 97032820 97032899 -27043273 - RSINE1 SINE B4 -23 142 60 9 1325 474 260 81 0 chr9 97032924 97033047 -27043125 - ID_B1 SINE B4 -8 216 84 9 1325 381 103 0 0 chr9 97033143 97033211 -27042961 + (A)n Simple_repeat Simple_repeat 1 68 0 9 1325 682 247 104 16 chr9 97034295 97034423 -27041749 - MLT1B LTR MaLR -91 299 167 9 1325 306 0 0 0 chr9 97034423 97034457 -27041715 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 9 1325 682 247 104 16 chr9 97034457 97034579 -27041593 - MLT1B LTR MaLR -224 166 28 9 1325 247 370 88 13 chr9 97034673 97034900 -27041272 - L2 LINE L2 -446 2973 2730 9 1325 695 208 23 23 chr9 97035381 97035553 -27040619 + B2_Mm2 SINE B2 1 172 -23 9 1325 417 204 11 11 chr9 97036799 97036888 -27039284 - B3 SINE B2 -119 97 9 1 1325 354 143 0 0 chr9 97037076 97037139 -27039033 + (CACCAT)n Simple_repeat Simple_repeat 5 67 0 1 1325 1479 44 16 27 chr9 97037224 97037411 -27038761 - B2_Mm2 SINE B2 -10 185 1 1 1325 919 270 107 20 chr9 97037598 97037897 -27038275 + ORR1E LTR MaLR 28 352 -7 1 1325 22 35 0 0 chr9 97037988 97038017 -27038155 + AT_rich Low_complexity Low_complexity 1 29 0 1 1325 599 232 34 34 chr9 97038018 97038165 -27038007 - B1F SINE Alu -2 147 1 1 1325 256 292 86 111 chr9 97038025 97038187 -27037985 - B4A SINE B4 -72 220 63 1 1325 288 294 21 21 chr9 97038353 97038447 -27037725 + CT-rich Low_complexity Low_complexity 4 97 0 1 1325 324 0 0 0 chr9 97038450 97038486 -27037686 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1 1325 1168 63 0 0 chr9 97038487 97038645 -27037527 - B2_Mm2 SINE B2 -37 158 1 1 1325 317 210 72 108 chr9 97038896 97039035 -27037137 + L1MC1 LINE L1 5263 5396 -2599 1 1325 603 311 93 3 chr9 97039028 97039318 -27036854 + L1MC1 LINE L1 5927 6242 -91 1 1325 24 0 0 0 chr9 97039401 97039425 -27036747 + AT_rich Low_complexity Low_complexity 1 24 0 1 1325 595 199 38 8 chr9 97039521 97039653 -27036519 + B1F SINE Alu 5 140 -9 1 1325 354 284 9 18 chr9 97040599 97040710 -27035462 - PB1D10 SINE Alu -7 110 1 1 1325 2434 125 0 16 chr9 97041360 97041701 -27034471 - RLTR14 LTR ERV1 0 382 47 1 1325 2394 131 5 36 chr9 97041701 97042112 -27034060 - RMER10B LTR ERVL 0 398 1 1 1325 2434 125 0 16 chr9 97042112 97042152 -27034020 - RLTR14 LTR ERV1 -336 46 7 1 1325 506 275 84 22 chr9 97043043 97043250 -27032922 - MLT1F1 LTR MaLR -49 631 325 1 1325 370 163 0 32 chr9 97043275 97043370 -27032802 + GA-rich Low_complexity Low_complexity 3 94 0 1 1325 432 0 0 0 chr9 97043756 97043804 -27032368 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1325 631 247 12 24 chr9 97044025 97044191 -27031981 + RSINE1 SINE B4 2 165 0 1 1325 243 258 30 0 chr9 97044556 97044622 -27031550 + MIR SINE MIR 78 145 -63 1 1325 186 222 0 0 chr9 97044756 97044810 -27031362 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1325 655 302 27 66 chr9 97044825 97045084 -27031088 - B4A SINE B4 0 292 44 1 1325 221 0 35 0 chr9 97048031 97048060 -27028112 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1325 987 128 0 13 chr9 97048060 97048200 -27027972 - B1_Mur4 SINE Alu -11 139 1 1 1325 3436 62 0 5 chr9 97048224 97048658 -27027514 - L1Md_F2 LINE L1 -20 6562 6131 1 1325 1318 167 0 13 chr9 97048753 97048978 -27027194 - URR1B DNA MER1_type -3 222 1 1 1325 2145 136 3 16 chr9 97049049 97049414 -27026758 - RLTR14 LTR ERV1 -20 362 3 1 1325 2367 68 3 9 chr9 97049450 97049779 -27026393 - ORR1A2 LTR MaLR 0 327 1 1 1325 186 43 0 0 chr9 97049871 97049894 -27026278 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1325 693 211 8 0 chr9 97049896 97050029 -27026143 - B1_Mus2 SINE Alu -13 134 1 1 1325 544 265 70 64 chr9 97050097 97050254 -27025918 - RSINE1 SINE B4 0 165 8 1 1325 1930 268 63 22 chr9 97050513 97051052 -27025120 + RCHARR1 DNA MER1_type 1 565 -409 1 1325 1595 27 32 0 chr9 97051052 97051239 -27024933 - B2_Mm1a SINE B2 0 193 1 1 1325 1930 268 63 22 chr9 97051239 97051348 -27024824 + RCHARR1 DNA MER1_type 566 676 -298 1 1325 553 313 24 77 chr9 97051323 97051659 -27024513 - MLT2C1 LTR ERVL -18 379 62 1 1325 1314 90 0 0 chr9 97052183 97052512 -27023660 + (CCA)n Simple_repeat Simple_repeat 1 329 0 1 1325 314 290 67 48 chr9 97052788 97052998 -27023174 + RMER15 LTR ERVL 347 560 -15 1 1325 400 241 196 70 chr9 97053636 97053779 -27022393 + B3A SINE B2 2 162 -36 1 1325 480 208 21 0 chr9 97053905 97054001 -27022171 - PB1D7 SINE Alu -5 115 18 1 1325 2454 153 53 0 chr9 97054002 97054400 -27021772 + MTC LTR MaLR 1 419 -2 1 1325 25 0 0 0 chr9 97054874 97054899 -27021273 + AT_rich Low_complexity Low_complexity 1 25 0 1 1325 862 67 0 0 chr9 97054899 97055018 -27021154 - B1_Mm SINE Alu 0 147 29 1 1325 1156 68 0 7 chr9 97055339 97055487 -27020685 + B1_Mm SINE Alu 1 147 0 1 1325 765 304 39 0 chr9 97055529 97055736 -27020436 + ID_B1 SINE B4 6 220 -4 1 1325 711 242 16 5 chr9 97056430 97056617 -27019555 + MER20B DNA MER1_type 198 386 -397 1 1325 3311 29 37 0 chr9 97056760 97057142 -27019030 + MTA_Mm LTR MaLR 1 396 0 1 1325 548 259 45 15 chr9 97057549 97057682 -27018490 + RSINE1 SINE B4 14 150 -15 1 1325 376 262 94 47 chr9 97057750 97057878 -27018294 + L1MC4a LINE L1 6841 6974 -908 1 1325 2626 144 102 20 chr9 97057916 97058404 -27017768 - RLTR11A LTR ERVK 0 528 1 1 1325 288 253 24 24 chr9 97058404 97058489 -27017683 - MYSERV16_I-int LTR ERVK 0 2326 2242 1 1325 1167 55 7 14 chr9 97058489 97058637 -27017535 + B1_Mm SINE Alu 1 147 0 1 1325 5839 180 27 23 chr9 97058640 97059883 -27016289 - MYSERV16_I-int LTR ERVK -44 2282 1035 1 1325 279 344 32 8 chr9 97059885 97060008 -27016164 - RMER4A LTR ERVK -43 423 298 1 1325 725 206 51 91 chr9 97060008 97060242 -27015930 - MYSERV16_I-int LTR ERVK -407 5373 5204 1 1325 324 175 0 0 chr9 97060243 97060306 -27015866 + GA-rich Low_complexity Low_complexity 5 67 0 1 1325 203 175 0 24 chr9 97060360 97060401 -27015771 + CT-rich Low_complexity Low_complexity 2 41 0 1 1325 378 0 0 0 chr9 97060407 97060449 -27015723 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1 1325 312 164 0 35 chr9 97060467 97060524 -27015648 - B2_Mm2 SINE B2 -94 101 47 1 1325 28 48 0 0 chr9 97060537 97060579 -27015593 + AT_rich Low_complexity Low_complexity 1 42 0 1 1325 927 134 51 0 chr9 97060590 97060747 -27015425 - B2_Mm2 SINE B2 -29 166 2 1 1325 238 337 23 11 chr9 97060945 97061032 -27015140 + MER21B LTR ERV1 185 272 -591 1 1325 300 278 173 40 chr9 97061223 97061425 -27014747 + MER21B LTR ERV1 610 838 -25 1 1325 1090 241 181 7 chr9 97061722 97062185 -27013987 - L1MB7 LINE L1 -47 6137 5594 1 1325 597 175 14 35 chr9 97062199 97062341 -27013831 - Lx7 LINE L1 0 7696 7558 1 1325 622 127 182 1 chr9 97062342 97062472 -27013700 + L1_Mur3 LINE L1 1668 1812 -4068 1 1325 322 274 91 30 chr9 97062472 97062604 -27013568 + MER63B DNA AcHobo 297 436 0 1 1325 264 233 50 0 chr9 97063443 97063503 -27012669 + BC1_Mm scRNA scRNA 21 83 -69 1 1325 229 346 12 12 chr9 97063547 97063629 -27012543 + MER102c DNA MER1_type 117 198 -133 1 1325 364 192 0 25 chr9 97063835 97063915 -27012257 + PB1 SINE Alu 11 88 -39 1 1325 308 176 0 14 chr9 97064704 97064773 -27011399 + G-rich Low_complexity Low_complexity 1 68 0 1 1325 719 278 114 34 chr9 97064898 97065311 -27010861 - L1M5 LINE L1 -1868 4278 3833 1 1325 1656 26 0 25 chr9 97065441 97065639 -27010533 - B2_Mm1t SINE B2 0 193 1 1 1325 784 106 121 0 chr9 97065643 97065775 -27010397 - B1_Mus1 SINE Alu 0 148 1 1 1325 1223 252 34 3 chr9 97065956 97066283 -27009889 - MTE2b LTR MaLR -4 375 39 1 1325 401 177 9 2 chr9 97066273 97066357 -27009815 - MTE2b LTR MaLR -292 87 1 1 1325 367 311 75 51 chr9 97066737 97067032 -27009140 - L1MC5 LINE L1 -733 7228 6927 1 1325 452 18 0 17 chr9 97067042 97067100 -27009072 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 1 1325 238 95 0 176 chr9 97067142 97067193 -27008979 - ID_B1 SINE B4 -3 221 180 1 1325 402 21 0 0 chr9 97067257 97067304 -27008868 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1325 186 43 0 0 chr9 97067352 97067375 -27008797 + (TTCTCC)n Simple_repeat Simple_repeat 3 25 0 1 1325 273 57 0 0 chr9 97067576 97067611 -27008561 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1325 1673 21 0 25 chr9 97067692 97067890 -27008282 - B2_Mm2 SINE B2 -1 194 2 1 1325 327 336 20 33 chr9 97068012 97068163 -27008009 - ERVL-int LTR ERVL -2450 3307 3159 1 1325 341 298 18 12 chr9 97069063 97069226 -27006946 - L1MEe LINE L1 -4352 502 339 1 1325 306 50 0 0 chr9 97069475 97069515 -27006657 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1325 1118 69 14 0 chr9 97069517 97069662 -27006510 - B1_Mm SINE Alu 0 147 1 1 1325 344 146 33 11 chr9 97070089 97070179 -27005993 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 1 1325 660 189 0 27 chr9 97070229 97070414 -27005758 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1325 305 100 0 0 chr9 97070557 97070617 -27005555 + Lx LINE L1 6595 6654 0 1 1325 1074 80 0 0 chr9 97070655 97070793 -27005379 + B1_Mus1 SINE Alu 3 140 -8 1 1325 353 44 43 14 chr9 97070793 97070862 -27005310 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 1 1325 207 100 0 0 chr9 97070877 97070907 -27005265 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1325 271 137 18 71 chr9 97071015 97071086 -27005086 + L2c LINE L2 3304 3387 0 1 1325 195 307 53 0 chr9 97071082 97071157 -27005015 + MIRb SINE MIR 145 223 -45 1 1325 324 0 0 0 chr9 97071178 97071214 -27004958 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1325 385 238 89 64 chr9 97071462 97071619 -27004553 - MER3 DNA MER1_type -38 171 11 1 1325 187 329 53 0 chr9 97071823 97071899 -27004273 + MIRb SINE MIR 100 179 -89 1 1325 1941 110 30 0 chr9 97072009 97072309 -27003863 + ORR1B1 LTR MaLR 1 309 -85 1 1325 558 98 0 0 chr9 97072415 97072497 -27003675 - ORR1B1 LTR MaLR -2 392 311 1 1325 183 139 56 0 chr9 97073850 97073886 -27002286 + L2b LINE L2 3314 3351 -24 1 1325 659 292 31 90 chr9 97074273 97074661 -27001511 - MLT1A0 LTR MaLR 0 365 1 1 1325 1299 79 0 0 chr9 97074784 97074961 -27001211 + (TTC)n Simple_repeat Simple_repeat 1 177 0 1 1325 973 151 0 9 chr9 97074962 97075182 -27000990 + CT-rich Low_complexity Low_complexity 1 217 0 1 1325 1199 115 59 16 chr9 97075195 97075214 -27000958 - B2_Mm2 SINE B2 0 195 177 1 1325 387 0 0 0 chr9 97075214 97075257 -27000915 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1 1325 1199 115 59 16 chr9 97075257 97075423 -27000749 - B2_Mm2 SINE B2 -19 176 3 1 1325 1019 233 118 64 chr9 97075521 97075943 -27000229 + L1MB7 LINE L1 5445 5889 -295 2 1325 591 208 16 8 chr9 97075965 97076091 -27000081 + RSINE1 SINE B4 20 146 -19 2 1325 247 289 0 0 chr9 97076117 97076200 -26999972 + L1MB8 LINE L1 5874 5956 -222 2 1325 1676 272 15 39 chr9 97076251 97076549 -26999623 + L1M2 LINE L1 4736 5017 -1126 2 1325 687 246 15 30 chr9 97076549 97076750 -26999422 + B3A SINE B2 1 198 0 2 1325 1676 272 15 39 chr9 97076750 97076993 -26999179 + L1M2 LINE L1 5018 5264 -879 2 1325 569 283 11 102 chr9 97077001 97077087 -26999085 - ORR1D-int LTR MaLR -12 1358 1282 2 1325 1280 27 0 0 chr9 97077087 97077233 -26998939 - B1_Mm SINE Alu 0 147 2 2 1325 569 283 11 102 chr9 97077233 97077410 -26998762 - ORR1D-int LTR MaLR -89 1281 1119 2 1325 491 108 32 24 chr9 97077553 97077676 -26998496 + (TA)n Simple_repeat Simple_repeat 1 124 0 2 1325 1739 260 7 14 chr9 97077718 97078139 -26998033 - MTE-int LTR MaLR -298 1282 865 2 1325 982 218 225 48 chr9 97078213 97078606 -26997566 + RMER15 LTR ERVL 27 489 -86 2 1325 658 259 145 85 chr9 97078606 97078923 -26997249 - RMER12 LTR ERVK 0 1322 987 2 1325 354 91 0 0 chr9 97078942 97078997 -26997175 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1325 3138 111 43 35 chr9 97078997 97079574 -26996598 - RMER12 LTR ERVK -434 888 307 2 1325 650 67 36 11 chr9 97080447 97080513 -26995659 - RMER12 LTR ERVK -1027 377 267 2 1325 1629 42 0 0 chr9 97080513 97080705 -26995467 + B2_Mm1a SINE B2 2 193 0 2 1325 1471 174 21 16 chr9 97080705 97081004 -26995168 - RMER12 LTR ERVK -1080 324 1 2 1325 235 221 195 0 chr9 97081004 97081081 -26995091 + RMER15 LTR ERVL 484 575 0 2 1325 293 298 24 0 chr9 97081081 97081165 -26995007 - MTE-int LTR MaLR -728 852 767 2 1325 408 312 125 35 chr9 97081364 97081676 -26994496 + ORR1E LTR MaLR 7 346 -13 2 1325 476 100 0 12 chr9 97082349 97082430 -26993742 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1325 348 264 11 11 chr9 97082430 97082522 -26993650 - ORR1E LTR MaLR -267 92 1 2 1325 2284 141 44 25 chr9 97083018 97083074 -26993098 - MTC LTR MaLR -7 414 368 2 1325 2279 148 134 50 chr9 97083074 97083613 -26992559 + RLTR31A_Mm LTR ERVK 1 584 0 2 1325 2284 141 44 25 chr9 97083613 97083962 -26992210 - MTC LTR MaLR -54 367 1 2 1325 294 346 47 34 chr9 97083963 97084199 -26991973 + L1ME3A LINE L1 5848 6086 -76 2 1325 1275 269 74 15 chr9 97084574 97085034 -26991138 - L1MA5 LINE L1 -1 6299 5813 2 1325 350 299 0 0 chr9 97085943 97086030 -26990142 + RSINE1 SINE B4 25 111 -54 2 1325 254 303 0 48 chr9 97086333 97086437 -26989735 + MamGypLTR3 LTR Gypsy 702 800 -39 2 1325 24 42 0 20 chr9 97087132 97087150 -26989022 + AT_rich Low_complexity Low_complexity 1 18 0 2 1325 3026 133 42 2 chr9 97087150 97087625 -26988547 - RLTR19 LTR ERVK -1 498 5 2 1325 24 42 0 20 chr9 97087625 97087655 -26988517 + AT_rich Low_complexity Low_complexity 1 30 0 2 1325 426 277 82 30 chr9 97087685 97087819 -26988353 - RSINE1 SINE B4 -14 151 11 2 1325 399 244 0 25 chr9 97088055 97088173 -26987999 - BC1_Mm scRNA scRNA -36 116 2 2 1325 453 262 0 60 chr9 97088189 97088339 -26987833 - B1F SINE Alu -8 141 1 2 1325 192 265 126 22 chr9 97088346 97088481 -26987691 + L2 LINE L2 2332 2480 -939 2 1325 387 0 0 0 chr9 97088724 97088767 -26987405 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1325 680 104 66 0 chr9 97088776 97088882 -26987290 - B1_Mur4 SINE Alu -37 113 1 2 1325 2632 71 3 0 chr9 97089731 97090057 -26986115 + ORR1A2 LTR MaLR 1 327 0 2 1325 1397 145 199 26 chr9 97090290 97090602 -26985570 - ORR1B2 LTR MaLR -1 366 1 2 1325 312 301 35 0 chr9 97090638 97090751 -26985421 - PB1D10 SINE Alu 0 117 1 2 1325 243 249 97 57 chr9 97092010 97092163 -26984009 - MLT2B1 LTR ERVL -10 544 353 2 1325 709 242 63 5 chr9 97092211 97092402 -26983770 - MLT2B1 LTR ERVL -293 227 26 2 1325 896 78 0 62 chr9 97092421 97092613 -26983559 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1325 441 0 0 0 chr9 97092721 97092770 -26983402 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 2 1325 303 146 0 18 chr9 97092794 97092850 -26983322 - B2_Mm2 SINE B2 -94 101 47 2 1325 1037 114 69 40 chr9 97092882 97093056 -26983116 - B2_Mm1t SINE B2 -14 179 1 2 1325 194 208 0 19 chr9 97093193 97093247 -26982925 + CT-rich Low_complexity Low_complexity 2 54 0 2 1325 314 320 21 0 chr9 97093272 97093369 -26982803 - PB1D10 SINE Alu -14 103 5 2 1325 1474 42 21 5 chr9 97093781 97093971 -26982201 + B2_Mm2 SINE B2 2 194 -1 2 1325 746 250 29 34 chr9 97093972 97094179 -26981993 - B3 SINE B2 -6 210 5 2 1325 21 0 0 0 chr9 97094237 97094258 -26981914 + AT_rich Low_complexity Low_complexity 1 21 0 2 1325 270 0 0 0 chr9 97094303 97094333 -26981839 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1325 232 292 104 0 chr9 97094428 97094524 -26981648 + LSU-rRNA_Hsa rRNA rRNA 3010 3115 -1920 2 1325 412 153 24 0 chr9 97094525 97094610 -26981562 + GA-rich Low_complexity Low_complexity 6 92 0 2 1325 1772 22 9 31 chr9 97094852 97095081 -26981091 - L1Md_F3 LINE L1 0 6584 6361 2 1325 4157 21 0 0 chr9 97095081 97095552 -26980620 + L1_Mm LINE L1 4696 5166 -717 2 1325 1232 250 103 54 chr9 97098090 97098487 -26977685 + MTD LTR MaLR 1 391 -28 2 1325 1427 257 47 3 chr9 97098497 97098856 -26977316 - MTEa LTR MaLR -4 375 1 2 1325 383 223 119 30 chr9 97099650 97099784 -26976388 + MIRc SINE MIR 65 210 -58 2 1325 688 172 0 38 chr9 97099848 97099981 -26976191 - B1_Mus2 SINE Alu -10 137 10 2 1325 339 231 149 31 chr9 97100014 97100175 -26975997 - Lx8 LINE L1 -2 7471 7292 2 1325 288 248 196 0 chr9 97101865 97101998 -26974174 - MER5A1 DNA MER1_type -7 159 1 2 1325 187 288 26 40 chr9 97103697 97103773 -26972399 + MIRc SINE MIR 81 155 -113 2 1325 2949 90 251 0 chr9 97104295 97104762 -26971410 + MT2B2 LTR ERVL 1 584 0 2 1325 12212 150 39 36 chr9 97105319 97106009 -26970163 - L1_Mur3 LINE L1 -2219 3661 2992 2 1325 1141 88 0 0 chr9 97106009 97106156 -26970016 - B1_Mus1 SINE Alu 0 148 2 2 1325 12212 150 39 36 chr9 97106156 97107070 -26969102 - L1_Mur3 LINE L1 -2889 2991 2059 2 1325 216 67 0 0 chr9 97107070 97107100 -26969072 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1325 12212 151 39 36 chr9 97107100 97107947 -26968225 - L1_Mur3 LINE L1 -3822 2058 1186 2 1325 3809 52 0 20 chr9 97107947 97108015 -26968157 - L1Md_F2 LINE L1 0 6582 6560 2 1325 3618 18 0 0 chr9 97108015 97108411 -26967761 + MTA_Mm LTR MaLR 1 396 0 2 1325 3809 52 0 20 chr9 97108411 97108867 -26967305 - L1Md_F2 LINE L1 -23 6559 6105 2 1325 521 175 178 39 chr9 97108867 97108928 -26967244 - L1_Mur3 LINE L1 -6543 1185 1108 2 1325 946 257 117 29 chr9 97110491 97110832 -26965340 - Lx3C LINE L1 0 6976 6606 2 1325 2554 63 39 6 chr9 97111428 97111764 -26964408 + L1_Mus2 LINE L1 6219 6565 -1 2 1325 1447 224 130 117 chr9 97111816 97112525 -26963647 - L1_Mur3 LINE L1 -6583 1145 428 2 1325 200 200 0 0 chr9 97112526 97112561 -26963611 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1325 285 51 0 0 chr9 97112562 97112601 -26963571 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1325 279 179 0 0 chr9 97112600 97112667 -26963505 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1325 207 0 0 0 chr9 97112670 97112693 -26963479 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1325 534 265 52 180 chr9 97112697 97113159 -26963013 - L1_Mur3 LINE L1 -7084 644 234 2 1325 396 0 0 0 chr9 97113159 97113203 -26962969 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1325 534 265 52 180 chr9 97113203 97113227 -26962945 - L1_Mur3 LINE L1 -7495 233 201 2 1325 2453 204 21 93 chr9 97113227 97113885 -26962287 - RMER19C LTR ERVK 0 611 1 2 1325 534 265 52 180 chr9 97113885 97113932 -26962240 - L1_Mur3 LINE L1 -7528 200 181 2 1325 483 63 0 0 chr9 97113932 97113995 -26962177 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1325 534 265 52 180 chr9 97113995 97114080 -26962092 - L1_Mur3 LINE L1 -7548 180 105 2 1325 244 264 112 9 chr9 97114653 97114760 -26961412 - L1ME1 LINE L1 -248 5931 5814 2 1325 238 246 236 24 chr9 97114756 97114964 -26961208 - L1MD1 LINE L1 0 6242 5991 2 1325 411 324 126 46 chr9 97115068 97115330 -26960842 - B4A SINE B4 -8 284 2 2 1325 841 270 82 56 chr9 97115347 97115723 -26960449 - L1MC1 LINE L1 -23 6310 5925 2 1325 649 268 41 18 chr9 97115944 97116115 -26960057 - Lx9 LINE L1 -1051 6593 6419 2 1325 433 291 74 30 chr9 97116232 97116462 -26959710 - Lx9 LINE L1 -1620 6024 5785 2 1325 1593 224 79 29 chr9 97116457 97116875 -26959297 - Lx9 LINE L1 -629 5218 4780 2 1325 385 337 89 0 chr9 97116927 97117096 -26959076 - L1MCa LINE L1 -4383 2125 1942 2 1325 504 208 199 24 chr9 97117108 97117374 -26958798 - ORR1D2 LTR MaLR -4 370 10 2 1325 433 118 58 8 chr9 97117382 97117502 -26958670 + (TA)n Simple_repeat Simple_repeat 2 127 0 2 1325 30882 117 12 7 chr9 97117627 97120739 -26955433 + L1_Mus3 LINE L1 509 3846 -2037 2 1325 3593 13 2 0 chr9 97120739 97121134 -26955038 + MTA_Mm LTR MaLR 1 396 0 2 1325 30882 97 10 3 chr9 97121134 97123916 -26952256 + L1_Mus3 LINE L1 3847 6638 0 2 1325 520 244 157 60 chr9 97123912 97124282 -26951890 - L1MCa LINE L1 -4665 1843 1438 2 165 1799 167 151 3 chr9 97124259 97124631 -26951541 - Lx6 LINE L1 0 7460 7034 2 1326 238 161 107 0 chr9 97124665 97124721 -26951451 + 4.5SRNA scRNA scRNA 6 67 -27 2 1326 225 0 0 0 chr9 97124785 97124810 -26951362 + (CAG)n Simple_repeat Simple_repeat 2 26 0 2 1326 1403 278 134 113 chr9 97124831 97125408 -26950764 - L1MCa LINE L1 -5157 1351 752 2 1326 261 0 0 0 chr9 97125408 97125437 -26950735 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1326 1403 278 134 113 chr9 97125437 97126004 -26950168 - L1MCa LINE L1 -5757 751 183 2 1326 271 250 0 0 chr9 97126053 97126113 -26950059 - L1MCa LINE L1 -6448 60 1 2 1326 315 303 12 73 chr9 97126112 97126276 -26949896 - L1MD1 LINE L1 -248 5994 5841 2 1326 743 210 291 27 chr9 97126323 97126357 -26949815 - RMER16 LTR ERVK 0 533 500 2 1326 216 0 0 0 chr9 97126357 97126381 -26949791 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 2 1326 743 203 216 53 chr9 97126381 97126680 -26949492 - RMER16 LTR ERVK -34 499 1 2 1326 991 247 141 42 chr9 97126692 97127483 -26948689 - L1MD1 LINE L1 -470 5772 4901 2 1326 426 159 0 0 chr9 97128601 97128689 -26947483 + (CCA)n Simple_repeat Simple_repeat 3 90 0 2 1326 341 298 6 0 chr9 97129607 97129768 -26946404 + (CA)n Simple_repeat Simple_repeat 1 162 0 2 1326 195 184 0 0 chr9 97129788 97129826 -26946346 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1326 2231 318 60 45 chr9 97129957 97131364 -26944808 - L1_Mur3 LINE L1 -10 5870 4443 2 1326 349 245 117 0 chr9 97131364 97131458 -26944714 - ID_B1 SINE B4 -41 183 79 2 1326 371 339 9 0 chr9 97131487 97131596 -26944576 + (TG)n Simple_repeat Simple_repeat 2 111 0 2 1326 300 308 29 0 chr9 97131650 97131754 -26944418 - L1_Mur3 LINE L1 -2057 3823 3717 2 1326 266 288 86 9 chr9 97132080 97132185 -26943987 - ERVL-E-int LTR ERVL -453 5261 5149 2 1326 23 33 0 0 chr9 97132234 97132264 -26943908 + AT_rich Low_complexity Low_complexity 1 30 0 2 1326 497 290 0 0 chr9 97132279 97132403 -26943769 - RSINE1 SINE B4 0 165 42 2 1326 408 265 0 33 chr9 97132435 97132556 -26943616 - PB1D10 SINE Alu 0 117 1 2 1326 685 364 45 22 chr9 97132556 97132958 -26943214 - ERVL-E-int LTR ERVL -595 5072 4662 2 1326 477 315 110 45 chr9 97133101 97133410 -26942762 - ERVL-E-int LTR ERVL -1192 4475 4147 2 1326 432 344 35 50 chr9 97133644 97133962 -26942210 - L1MEf LINE L1 -5008 1632 1320 2 1326 405 0 0 0 chr9 97133975 97134020 -26942152 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1326 701 322 52 16 chr9 97134597 97134933 -26941239 - L1MEf LINE L1 -5426 1214 874 2 1326 270 304 134 0 chr9 97134986 97135098 -26941074 - L1MEf LINE L1 -5749 891 765 2 1326 323 326 133 10 chr9 97135167 97135362 -26940810 - L1MEf LINE L1 -5967 673 455 2 1326 216 0 0 0 chr9 97135627 97135651 -26940521 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1326 275 339 83 38 chr9 97135755 97135887 -26940285 + LTR84a LTR ERVL 25 162 -595 3 1326 1210 48 0 20 chr9 97135983 97135997 -26940175 - B1_Mus1 SINE Alu -1 147 136 3 1326 198 0 0 0 chr9 97135997 97136019 -26940153 + (C)n Simple_repeat Simple_repeat 1 22 0 3 1326 1210 48 0 20 chr9 97136019 97136154 -26940018 - B1_Mus1 SINE Alu -13 135 1 3 1326 1058 341 25 21 chr9 97136234 97136716 -26939456 + LTR84a LTR ERVL 271 754 -3 3 1326 27 29 0 0 chr9 97137412 97137446 -26938726 + AT_rich Low_complexity Low_complexity 1 34 0 3 1326 3639 58 2 0 chr9 97137839 97138287 -26937885 + L1_Mus1 LINE L1 6118 6566 -1 3 1326 438 20 0 0 chr9 97139736 97139787 -26936385 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1326 1204 69 11 11 chr9 97139787 97139963 -26936209 + (GAGAA)n Simple_repeat Simple_repeat 5 180 0 3 1326 224 300 50 0 chr9 97141032 97141112 -26935060 + MIR SINE MIR 19 102 -160 3 1326 360 239 112 0 chr9 97141188 97141300 -26934872 - MLT1A0 LTR MaLR -37 371 218 3 1326 243 188 0 0 chr9 97141461 97141509 -26934663 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1326 1151 51 0 0 chr9 97142286 97142423 -26933749 + B1_Mm SINE Alu 2 138 -9 3 1326 388 47 116 0 chr9 97142440 97142569 -26933603 + (CAAAC)n Simple_repeat Simple_repeat 2 145 0 3 1326 466 302 28 27 chr9 97142590 97142801 -26933371 + MIRb SINE MIR 45 248 -14 3 1326 212 111 0 22 chr9 97143882 97143908 -26932264 + (CAA)n Simple_repeat Simple_repeat 3 28 0 3 1326 597 28 0 0 chr9 97143908 97143979 -26932193 + (CCA)n Simple_repeat Simple_repeat 3 73 0 3 1326 212 111 0 22 chr9 97143979 97143998 -26932174 + (CAA)n Simple_repeat Simple_repeat 2 20 0 3 1326 2331 109 23 11 chr9 97145027 97145380 -26930792 + RLTR15 LTR ERVK 1 357 -2 3 1326 1283 20 0 0 chr9 97145659 97145806 -26930366 + B1_Mm SINE Alu 1 147 0 3 1326 564 325 50 0 chr9 97146011 97146171 -26930001 - B3A SINE B2 -30 168 1 3 1326 1017 166 17 0 chr9 97147227 97147402 -26928770 - ORR1C1 LTR MaLR -9 369 192 3 1326 4314 159 151 24 chr9 97147411 97148389 -26927783 - RLTR25A LTR ERVK 0 1103 1 3 1326 956 184 95 0 chr9 97148389 97148569 -26927603 - ORR1C1 LTR MaLR -180 198 1 3 1326 975 255 69 14 chr9 97148614 97148822 -26927350 + B4 SINE B4 2 223 -69 3 1326 804 57 0 0 chr9 97148822 97148928 -26927244 + (CCAA)n Simple_repeat Simple_repeat 2 107 0 3 1326 975 255 69 14 chr9 97148928 97148994 -26927178 + B4 SINE B4 224 291 -1 3 1326 792 276 117 44 chr9 97149082 97149592 -26926580 + L1M2 LINE L1 4890 5433 -447 3 1326 315 0 0 0 chr9 97149597 97149632 -26926540 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 1326 631 178 42 0 chr9 97149632 97149750 -26926422 - B1_Mus2 SINE Alu -12 135 13 3 1326 390 246 58 8 chr9 97149767 97149905 -26926267 + L1M2 LINE L1 5484 5627 -664 3 1326 4935 201 100 9 chr9 97149914 97150378 -26925794 - RMER12 LTR ERVK 0 1322 769 3 1326 351 78 0 0 chr9 97150378 97150429 -26925743 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 3 1326 4935 201 100 9 chr9 97150429 97151176 -26924996 - RMER12 LTR ERVK -554 768 2 3 1326 229 0 83 0 chr9 97151187 97151223 -26924949 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1326 464 249 137 42 chr9 97151332 97151500 -26924672 - MLT1E3 LTR MaLR -440 184 1 3 1326 1703 199 89 23 chr9 97151517 97152021 -26924151 + BGLII_B LTR ERVK 1 435 -6 3 1326 840 20 0 0 chr9 97152026 97152124 -26924048 + (CAG)n Simple_repeat Simple_repeat 2 99 0 3 1326 453 242 126 35 chr9 97152326 97152557 -26923615 + L1MEf LINE L1 1822 2073 -4127 3 1326 393 311 117 20 chr9 97152628 97152877 -26923295 + L1ME2z LINE L1 5894 6166 -278 3 1326 329 191 120 17 chr9 97153117 97153234 -26922938 + L1ME2z LINE L1 6146 6274 -170 3 1326 251 220 114 44 chr9 97153318 97153432 -26922740 + L1MEf LINE L1 1519 1640 -4602 3 1326 307 233 23 101 chr9 97153771 97153855 -26922317 + L1MEf LINE L1 2136 2219 -4023 3 1326 1395 96 5 0 chr9 97153855 97154042 -26922130 + B2_Mm2 SINE B2 4 191 -4 3 1326 307 251 37 92 chr9 97154042 97154156 -26922016 + L1MEf LINE L1 2214 2326 -3820 3 1326 2913 73 0 10 chr9 97154162 97154548 -26921624 + L1Md_F2 LINE L1 6201 6582 0 3 1326 291 28 0 0 chr9 97154557 97154593 -26921579 + U2 snRNA snRNA 1 36 -152 3 1326 1649 70 56 59 chr9 97154606 97154893 -26921279 + Lx LINE L1 6367 6652 -2 3 1326 36661 66 5 0 chr9 97155598 97161805 -26914367 - L1Md_F2 LINE L1 -15 6567 331 3 1326 212 196 19 19 chr9 97165865 97165917 -26910255 + CT-rich Low_complexity Low_complexity 4 55 0 3 1326 183 308 46 0 chr9 97167075 97167140 -26909032 - L3 LINE CR1 -2258 2231 2164 3 1326 407 329 110 47 chr9 97167103 97167486 -26908686 + L4 LINE RTE 1546 1952 -77 3 1326 429 236 45 36 chr9 97167554 97167664 -26908508 - PB1D10 SINE Alu -1 116 6 3 1326 232 330 17 0 chr9 97167673 97167788 -26908384 - LTR78 LTR ERV1 -50 1254 1138 3 1326 231 322 91 25 chr9 97167884 97168005 -26908167 - MIR SINE MIR -106 156 28 3 1326 719 267 20 4 chr9 97168083 97168352 -26907820 + MTD LTR MaLR 13 295 -105 3 1326 2286 141 27 45 chr9 97168413 97168760 -26907412 + ORR1B1 LTR MaLR 1 349 -45 3 1326 7257 32 7 1 chr9 97168760 97169611 -26906561 + L1Md_F3 LINE L1 5729 6584 0 3 1326 2286 141 27 45 chr9 97169611 97169664 -26906508 + ORR1B1 LTR MaLR 350 394 0 3 1326 5769 154 36 24 chr9 97169704 97170775 -26905397 + Lx2B LINE L1 5912 6995 -5 3 1326 886 232 19 44 chr9 97170843 97171119 -26905053 + MTC-int LTR MaLR 89 356 -742 3 1326 2050 203 43 44 chr9 97171119 97171640 -26904532 + MERVL_2A-int LTR ERVL 5068 5610 -147 3 1326 325 178 0 40 chr9 97171652 97171728 -26904444 + MTC-int LTR MaLR 567 639 -1324 3 1326 1977 241 45 2 chr9 97171797 97172259 -26903913 + MT2A LTR ERVL 8 489 -44 3 1326 22 106 0 0 chr9 97172265 97172350 -26903822 + AT_rich Low_complexity Low_complexity 1 85 0 3 1326 237 178 0 0 chr9 97172352 97172397 -26903775 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 3 1326 330 26 0 0 chr9 97172393 97172432 -26903740 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1326 231 196 18 18 chr9 97172440 97172497 -26903675 + MLT2B1 LTR ERVL 511 567 0 3 1326 1986 280 89 8 chr9 97172497 97173145 -26903027 - ORR1E-int LTR MaLR -852 728 28 3 1326 872 304 73 44 chr9 97173283 97173624 -26902548 - ORR1E LTR MaLR -2 357 7 3 1326 248 358 39 39 chr9 97174870 97175024 -26901148 + MIRb SINE MIR 96 249 -19 3 1326 295 306 18 36 chr9 97175044 97175156 -26901016 + MIRb SINE MIR 139 248 -20 3 1326 232 365 91 36 chr9 97175206 97175371 -26900801 + ORR1E LTR MaLR 81 254 -105 3 1326 205 200 19 57 chr9 97175817 97175870 -26900302 + CT-rich Low_complexity Low_complexity 2 52 0 3 1326 2207 105 20 19 chr9 97175954 97176306 -26899866 + RLTR44A LTR ERVK 67 501 -1 3 1326 2351 143 56 58 chr9 97176306 97176840 -26899332 + RLTR44-int LTR ERVK 16 548 -2264 3 1326 464 100 71 0 chr9 97176834 97176904 -26899268 + RLTR44-int LTR ERVK 857 931 -1881 3 1326 17053 45 1 1 chr9 97176904 97178899 -26897273 + RLTR44-int LTR ERVK 816 2812 0 3 1326 1825 108 94 15 chr9 97178901 97179241 -26896931 + RLTR44A LTR ERVK 3 405 0 3 1326 249 33 0 0 chr9 97179585 97179615 -26896557 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1326 403 267 42 78 chr9 97179628 97179821 -26896351 - L1MA4 LINE L1 -376 5936 5751 3 1326 421 256 125 25 chr9 97179827 97179947 -26896225 - ID_B1 SINE B4 -2 222 91 3 1326 693 317 110 9 chr9 97179962 97180408 -26895764 - L1MA4 LINE L1 -535 5762 5272 3 1326 438 69 0 0 chr9 97180408 97180466 -26895706 + (TTTCC)n Simple_repeat Simple_repeat 2 59 0 3 1326 1326 102 43 0 chr9 97180466 97180652 -26895520 - B2_Mm2 SINE B2 -1 194 1 3 1326 286 259 70 18 chr9 97180656 97180770 -26895402 - L1MA4 LINE L1 -862 5281 5162 3 1326 370 198 17 8 chr9 97180977 97181094 -26895078 + CT-rich Low_complexity Low_complexity 3 120 0 3 1326 2215 277 83 27 chr9 97181153 97181909 -26894263 - L1MA4 LINE L1 -985 4895 4079 3 1326 621 0 0 0 chr9 97181909 97181978 -26894194 + (GAGAA)n Simple_repeat Simple_repeat 1 69 0 3 1326 2215 275 75 26 chr9 97181978 97182392 -26893780 - L1MA4 LINE L1 -2046 4097 3658 3 1326 354 23 0 0 chr9 97182396 97182439 -26893733 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 1326 21 82 0 0 chr9 97182526 97182575 -26893597 + AT_rich Low_complexity Low_complexity 1 49 0 3 1326 426 259 259 0 chr9 97182845 97183015 -26893157 - B3 SINE B2 -1 215 2 3 1326 544 332 28 7 chr9 97183867 97184158 -26892014 - L1MA4 LINE L1 -3110 3033 2737 3 1326 1200 247 49 75 chr9 97184160 97184549 -26891623 - MTE2a LTR MaLR 0 379 1 3 1326 422 284 32 148 chr9 97185187 97185497 -26890675 - ORR1E LTR MaLR -6 353 80 3 1326 336 64 0 0 chr9 97186628 97186675 -26889497 + (CAA)n Simple_repeat Simple_repeat 1 47 0 3 1326 729 294 46 40 chr9 97186769 97187192 -26888980 + MLT1D LTR MaLR 3 496 -9 3 1326 396 0 0 0 chr9 97187280 97187324 -26888848 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1326 1009 274 65 38 chr9 97187460 97187752 -26888420 + MTD LTR MaLR 5 304 -115 3 1326 2454 63 0 59 chr9 97187732 97188071 -26888101 - ORR1A2 LTR MaLR -8 319 1 3 1326 1043 151 33 22 chr9 97188071 97188249 -26887923 + URR1A DNA MER1_type 45 224 -2 3 1326 687 199 109 0 chr9 97188252 97188408 -26887764 + MTD LTR MaLR 247 419 0 3 1326 366 218 0 37 chr9 97188420 97188501 -26887671 - MER5C DNA MER1_type -44 269 192 3 1326 329 294 0 76 chr9 97190124 97190242 -26885930 - ORR1E LTR MaLR -270 109 1 3 1326 499 161 140 0 chr9 97190765 97190858 -26885314 - ORR1C1 LTR MaLR -272 106 1 3 1326 326 290 23 39 chr9 97190860 97190989 -26885183 - L1M3 LINE L1 -446 5725 5599 3 1326 195 100 0 0 chr9 97190991 97191021 -26885151 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 3 1326 569 191 0 26 chr9 97191021 97191134 -26885038 - B1_Mur3 SINE Alu 0 149 40 3 1326 440 243 8 67 chr9 97191169 97191288 -26884884 - PB1D10 SINE Alu -1 116 5 3 1326 409 216 130 76 chr9 97191306 97191491 -26884681 - L1M3 LINE L1 -660 5511 5317 3 1326 433 280 82 51 chr9 97191567 97191725 -26884447 - RSINE1 SINE B4 0 165 3 3 1326 293 369 57 0 chr9 97192244 97192366 -26883806 - L2b LINE L2 -9 3366 3238 3 1326 517 281 14 7 chr9 97192388 97192535 -26883637 - B1F SINE Alu -1 148 1 3 1326 231 286 65 93 chr9 97192763 97192871 -26883301 + MLT2D LTR ERVL 413 517 -43 3 1326 201 39 0 0 chr9 97193009 97193035 -26883137 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1326 1755 161 110 26 chr9 97193938 97194217 -26881955 + ORR1B1 LTR MaLR 3 319 -75 3 1326 2420 214 41 82 chr9 97194217 97194852 -26881320 + RMER19C LTR ERVK 1 609 -2 3 1326 1755 161 110 26 chr9 97194852 97194917 -26881255 + ORR1B1 LTR MaLR 320 376 -18 3 1326 233 301 146 0 chr9 97196240 97196343 -26879829 - MLT1A1 LTR MaLR -288 120 3 3 1326 862 226 81 48 chr9 97196476 97196822 -26879350 - RMER15 LTR ERVL -103 472 27 3 1326 748 271 34 11 chr9 97196916 97197095 -26879077 + RLTR28B LTR ERVL 4 186 -295 4 1326 673 251 136 83 chr9 97197488 97197827 -26878345 - Lx8 LINE L1 -2 7471 7115 4 1326 366 23 0 0 chr9 97197955 97197998 -26878174 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1326 391 297 124 21 chr9 97199085 97199271 -26876901 - MIRb SINE MIR 0 268 64 4 1326 467 184 7 0 chr9 97199785 97199921 -26876251 + GA-rich Low_complexity Low_complexity 2 138 0 4 1326 761 295 84 19 chr9 97200640 97200966 -26875206 + MLT1D LTR MaLR 270 626 -1 4 1326 805 268 128 89 chr9 97201022 97201495 -26874677 - MLT2B2 LTR ERVL -4 511 72 4 1326 5807 222 80 32 chr9 97201495 97201612 -26874560 + Lx9 LINE L1 6052 6105 -1539 4 1326 378 85 0 0 chr9 97201612 97201671 -26874501 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1326 5807 210 66 28 chr9 97201671 97202000 -26874172 + Lx9 LINE L1 6106 6454 -1190 4 1326 3090 152 98 25 chr9 97202000 97202293 -26873879 + RMER6C LTR ERVK 1 331 -359 4 1326 533 52 13 0 chr9 97202293 97202370 -26873802 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 1326 3090 152 98 25 chr9 97202370 97202716 -26873456 + RMER6C LTR ERVK 332 686 -4 4 1326 5807 210 66 28 chr9 97202716 97203675 -26872497 + Lx9 LINE L1 6455 7447 -197 4 1326 361 300 80 43 chr9 97204456 97204644 -26871528 + ORR1E LTR MaLR 1 195 -164 4 1326 273 309 128 44 chr9 97205241 97205444 -26870728 + MIRc SINE MIR 3 222 -46 4 1326 400 237 101 42 chr9 97206163 97206282 -26869890 + RMER30 DNA MER1_type 2 127 -75 4 1326 290 280 139 41 chr9 97206298 97206470 -26869702 - B4A SINE B4 0 292 105 4 1326 329 225 122 0 chr9 97207580 97207687 -26868485 + MIRb SINE MIR 99 219 -43 4 1326 566 96 19 19 chr9 97207702 97207808 -26868364 + (GAGAA)n Simple_repeat Simple_repeat 4 109 0 4 1326 322 326 22 52 chr9 97208601 97208737 -26867435 - MIRb SINE MIR -49 219 88 4 1326 181 382 101 0 chr9 97208865 97208954 -26867218 - L3b LINE CR1 -3 479 382 4 1326 399 21 0 0 chr9 97209714 97209762 -26866410 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1326 258 280 89 79 chr9 97210533 97210723 -26865449 + MIRb SINE MIR 1 192 -76 4 1326 271 284 73 10 chr9 97211623 97211719 -26864453 - MIRb SINE MIR -53 215 114 4 1326 246 62 0 0 chr9 97211778 97211810 -26864362 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 4 1326 306 271 37 18 chr9 97211833 97211942 -26864230 - LTR16A1 LTR ERVL -40 416 306 4 1326 282 315 63 86 chr9 97212011 97212313 -26863859 - RLTR15 LTR ERVK -45 314 20 4 1326 1342 280 15 12 chr9 97212657 97212982 -26863190 - MTEa LTR MaLR -8 371 46 4 1326 1317 287 70 16 chr9 97213343 97213857 -26862315 - MLT1F1 LTR MaLR 0 569 28 4 1326 188 97 65 0 chr9 97213862 97213893 -26862279 - L4 LINE RTE -557 1472 1440 4 1326 531 69 0 0 chr9 97213998 97214070 -26862102 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 1326 4259 179 76 121 chr9 97215512 97215620 -26860552 - RMER1A Other Other -10 1020 911 4 1326 321 47 0 0 chr9 97215620 97215663 -26860509 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1326 4259 204 65 88 chr9 97215663 97217200 -26858972 - RMER1A Other Other -120 910 1 4 1326 269 276 98 114 chr9 97217492 97217676 -26858496 + MLT1I LTR MaLR 6 186 -225 4 1326 631 282 66 6 chr9 97218137 97218319 -26857853 + MLT1G1 LTR MaLR 1 193 -386 4 1326 786 43 8 17 chr9 97218645 97218762 -26857410 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 4 1326 460 353 43 60 chr9 97218797 97219147 -26857025 - ORR1E LTR MaLR -5 354 11 4 1326 677 271 127 18 chr9 97219964 97220193 -26855979 + Tigger5 DNA MER2_type 20 273 -2133 4 1326 755 254 80 52 chr9 97220164 97220413 -26855759 + Tigger5 DNA MER2_type 2151 2406 0 4 1326 247 355 55 69 chr9 97220630 97220775 -26855397 - LTR78 LTR ERV1 -243 1061 919 4 1326 1117 130 128 20 chr9 97221300 97221496 -26854676 - URR1B DNA MER1_type -6 219 3 4 1326 180 111 0 0 chr9 97222230 97222257 -26853915 + (TATG)n Simple_repeat Simple_repeat 4 30 0 4 1326 843 282 53 36 chr9 97223077 97223379 -26852793 + MER2 DNA MER2_type 1 307 -38 4 1326 391 229 135 145 chr9 97223759 97224173 -26851999 + RMER17C LTR ERVK 1 410 0 4 1326 450 0 0 0 chr9 97224303 97224353 -26851819 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1326 421 264 108 119 chr9 97224449 97224827 -26851345 - RMER17C LTR ERVK -36 374 1 4 1326 4417 164 53 100 chr9 97224828 97225200 -26850972 - RMER17C-int LTR ERVK -1 3237 2853 4 1326 2360 87 15 9 chr9 97225200 97225525 -26850647 - ORR1A2 LTR MaLR 0 327 1 4 1326 4417 181 59 95 chr9 97225525 97226452 -26849720 - RMER17C-int LTR ERVK -2461 3676 2231 4 1326 603 40 0 0 chr9 97226452 97226526 -26849646 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 4 1326 3436 229 77 78 chr9 97226526 97227340 -26848832 - RMER17C-int LTR ERVK -2921 3216 2416 4 1326 25696 31 1 1 chr9 97227362 97231049 -26845123 - L1Md_F2 LINE L1 -1 6581 2894 4 1326 35894 49 1 4 chr9 97231038 97236615 -26839557 + L1Md_T LINE L1 1 5589 -297 4 1326 8470 37 1 0 chr9 97236616 97237610 -26838562 + L1Md_T LINE L1 5591 6585 0 4 1326 13550 56 0 4 chr9 97237613 97239942 -26836230 - L1Md_A LINE L1 -2975 2908 631 4 1326 459 222 94 0 chr9 97239955 97240072 -26836100 - RMER17C-int LTR ERVK -3708 2429 2302 4 1326 448 194 136 110 chr9 97240043 97240234 -26835938 - RMER17C-int LTR ERVK -3397 2125 1930 4 1326 556 254 17 114 chr9 97240416 97240652 -26835520 - RMER17C-int LTR ERVK -1904 1334 1122 4 1326 182 33 0 62 chr9 97240904 97240936 -26835236 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1326 265 269 0 133 chr9 97241269 97241359 -26834813 - RodERV21-int LTR ERV1 -4044 947 870 4 1326 931 270 115 62 chr9 97241358 97241966 -26834206 - RodERV21-int LTR ERV1 -4238 753 114 4 1326 286 267 0 53 chr9 97242154 97242249 -26833923 + G-rich Low_complexity Low_complexity 3 92 0 4 1326 568 219 80 7 chr9 97243080 97243218 -26832954 - B1F1 SINE Alu -1 148 1 4 1326 408 324 40 17 chr9 97244421 97244594 -26831578 + MIRb SINE MIR 68 244 -24 4 1326 226 295 123 8 chr9 97246449 97246579 -26829593 + LTR50 LTR ERVL 3 147 -648 4 1326 8237 28 15 9 chr9 97246667 97247641 -26828531 + L1Md_F2 LINE L1 5603 6582 0 4 1326 378 0 0 0 chr9 97247835 97247877 -26828295 + (TGG)n Simple_repeat Simple_repeat 3 44 0 4 1326 260 311 54 59 chr9 97248314 97248485 -26827687 + L2c LINE L2 2960 3131 -256 4 1326 199 0 65 0 chr9 97248735 97248766 -26827406 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1326 297 0 0 0 chr9 97248767 97248800 -26827372 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1326 507 56 0 0 chr9 97248801 97248872 -26827300 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 4 1326 196 330 11 0 chr9 97250316 97250404 -26825768 - MIRb SINE MIR -62 206 118 4 1326 303 28 0 0 chr9 97251846 97251882 -26824290 + (CAAAC)n Simple_repeat Simple_repeat 3 38 0 4 1326 240 290 147 33 chr9 97252089 97252239 -26823933 + L1M5 LINE L1 4072 4238 -1908 4 1326 227 289 100 0 chr9 97252421 97252511 -26823661 - L1MA9 LINE L1 -43 6269 6171 4 1326 426 308 18 32 chr9 97253465 97253686 -26822486 + L1M5 LINE L1 5017 5234 -912 4 1326 2354 105 12 0 chr9 97253986 97254309 -26821863 + ORR1A2 LTR MaLR 1 327 0 4 1326 322 269 118 0 chr9 97254365 97254484 -26821688 + MLT1B LTR MaLR 13 145 -245 4 1326 236 330 59 34 chr9 97254704 97254823 -26821349 + L1M5 LINE L1 5731 5852 -342 4 1326 1166 196 4 51 chr9 97254823 97255059 -26821113 + URR1B DNA MER1_type 1 225 0 4 1327 459 282 121 63 chr9 97255574 97255922 -26820250 + MLT1D LTR MaLR 102 469 -36 4 1327 432 0 0 0 chr9 97256082 97256130 -26820042 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1327 186 64 20 78 chr9 97257963 97258014 -26818158 + G-rich Low_complexity Low_complexity 6 53 0 4 1327 207 211 19 19 chr9 97258273 97258326 -26817846 + GA-rich Low_complexity Low_complexity 3 55 0 4 1327 357 191 29 37 chr9 97258329 97258465 -26817707 + G-rich Low_complexity Low_complexity 4 138 0 4 1327 306 0 0 0 chr9 97258604 97258638 -26817534 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1327 330 308 15 8 chr9 97258867 97258998 -26817174 + MER53 DNA hAT 48 179 -14 4 1327 530 266 0 0 chr9 97259903 97260016 -26816156 - RSINE1 SINE B4 -22 143 31 4 1327 225 242 63 42 chr9 97260198 97260293 -26815879 - L1ME4a LINE L1 -3 6121 6025 4 1327 736 184 7 41 chr9 97260431 97260578 -26815594 + RSINE1 SINE B4 2 143 -22 4 1327 516 14 41 0 chr9 97260578 97260651 -26815521 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1327 528 59 0 0 chr9 97260651 97260718 -26815454 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1327 198 0 0 0 chr9 97260859 97260881 -26815291 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1327 335 264 74 0 chr9 97261565 97261686 -26814486 + MER5A1 DNA MER1_type 6 135 -31 4 1327 1260 56 0 0 chr9 97262276 97262437 -26813735 + (TTCC)n Simple_repeat Simple_repeat 2 162 0 4 1327 212 213 21 0 chr9 97262494 97262541 -26813631 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 4 1327 479 280 68 0 chr9 97262919 97263051 -26813121 - B4A SINE B4 -149 143 3 4 1327 705 12 0 0 chr9 97264228 97264310 -26811862 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 1327 1697 229 21 10 chr9 97264708 97265087 -26811085 + MTD LTR MaLR 35 411 -8 4 1327 21 0 0 0 chr9 97265258 97265279 -26810893 + AT_rich Low_complexity Low_complexity 1 21 0 4 1327 199 54 26 26 chr9 97265534 97265572 -26810600 + (CCA)n Simple_repeat Simple_repeat 3 40 0 4 1327 355 222 22 0 chr9 97265738 97265828 -26810344 - MIR SINE MIR -67 195 104 4 1327 279 0 0 0 chr9 97266998 97267029 -26809143 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 1327 351 299 118 0 chr9 97267090 97267234 -26808938 + MER90 LTR ERV1 144 304 -310 4 1327 364 237 10 31 chr9 97267366 97267462 -26808710 + MER90 LTR ERV1 482 575 0 4 1327 204 358 10 10 chr9 97267659 97267755 -26808417 + MIRb SINE MIR 110 205 -63 4 1327 306 269 18 86 chr9 97268945 97269108 -26807064 + MER5B DNA MER1_type 27 178 0 4 1327 223 268 56 14 chr9 97269501 97269573 -26806599 + MIRc SINE MIR 48 122 -146 4 1327 246 32 0 0 chr9 97269765 97269796 -26806376 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1327 1118 106 4 23 chr9 97271037 97271487 -26804685 + (CACCC)n Simple_repeat Simple_repeat 1 441 0 4 1327 386 262 174 0 chr9 97272063 97272235 -26803937 - L1MB7 LINE L1 0 6184 5983 4 1327 233 191 180 0 chr9 97272273 97272362 -26803810 - L1M3 LINE L1 -256 5924 5820 4 1327 1454 292 86 20 chr9 97272455 97272650 -26803522 + Lx8 LINE L1 6825 7025 -448 4 1327 531 0 0 0 chr9 97272650 97272709 -26803463 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1327 1454 292 86 20 chr9 97272709 97273121 -26803051 + Lx8 LINE L1 7026 7471 -2 4 1327 400 214 11 11 chr9 97273493 97273583 -26802589 - PB1D7 SINE Alu -20 100 11 5 1327 276 290 10 41 chr9 97273496 97273593 -26802579 - ID_B1 SINE B4 -49 175 82 5 1327 577 173 96 59 chr9 97273645 97273780 -26802392 - B3 SINE B2 -50 166 27 5 1327 1752 177 27 24 chr9 97273808 97274138 -26802034 - Lx4B LINE L1 -27 7031 6701 5 1327 678 287 81 34 chr9 97274174 97274495 -26801677 - L1MA5 LINE L1 -269 6031 5696 5 1327 2815 49 20 0 chr9 97274525 97274873 -26801299 - L1_Mus1 LINE L1 0 6567 6213 5 1327 1012 104 0 35 chr9 97274924 97275093 -26801079 + URR1A DNA MER1_type 64 226 0 5 1327 1018 269 35 64 chr9 97275093 97275848 -26800324 - L1MA5 LINE L1 -648 5643 4909 5 1327 3220 69 2 15 chr9 97276477 97276889 -26799283 - MTB_Mm LTR MaLR 0 407 1 5 1327 296 321 99 40 chr9 97277526 97277657 -26798515 + LTR16A LTR ERVL 227 362 -89 5 1327 1025 253 85 80 chr9 97277657 97277928 -26798244 + ORR1D2 LTR MaLR 4 255 -115 5 1327 963 123 0 0 chr9 97277928 97278082 -26798090 + (TC)n Simple_repeat Simple_repeat 1 154 0 5 1327 1025 253 85 80 chr9 97278082 97278175 -26797997 + ORR1D2 LTR MaLR 256 369 -1 5 1327 355 321 99 40 chr9 97278175 97278244 -26797928 + LTR16A LTR ERVL 356 439 -12 5 1327 857 256 98 34 chr9 97278257 97278585 -26797587 + LTR87 LTR ERVL? 276 624 0 5 1327 925 275 62 104 chr9 97278664 97279261 -26796911 + L1MC5 LINE L1 7003 7574 -387 5 1327 262 205 26 0 chr9 97279435 97279513 -26796659 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1327 189 229 0 0 chr9 97279512 97279560 -26796612 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1327 2283 129 54 6 chr9 97280107 97280457 -26795715 - ORR1B2 LTR MaLR 0 367 1 5 1327 226 333 27 62 chr9 97280588 97280700 -26795472 - MLT1C LTR MaLR -84 383 276 5 1327 208 0 12 122 chr9 97281123 97281205 -26794967 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 5 1327 396 239 22 33 chr9 97281455 97281546 -26794626 - RSINE1 SINE B4 -32 133 44 5 1327 1169 219 137 50 chr9 97281552 97281889 -26794283 + ORR1D2 LTR MaLR 1 366 -4 5 1327 972 224 24 33 chr9 97281918 97282130 -26794042 - B3 SINE B2 -6 210 1 5 1327 860 262 122 60 chr9 97283261 97283614 -26792558 + MTEb LTR MaLR 1 375 -4 5 1327 200 315 54 113 chr9 97284619 97284823 -26791349 + MIR SINE MIR 56 247 -15 5 1327 184 347 10 59 chr9 97284951 97285052 -26791120 + MIR SINE MIR 99 194 -68 5 1327 275 340 87 48 chr9 97286373 97286707 -26789465 - ERVL-E-int LTR ERVL -2205 3462 3116 5 1327 481 382 64 31 chr9 97286846 97287270 -26788902 - ERVL-E-int LTR ERVL -2722 2945 2508 5 1327 256 164 32 16 chr9 97287271 97287333 -26788839 + GA-rich Low_complexity Low_complexity 3 65 0 5 1327 1353 287 30 26 chr9 97287523 97287949 -26788223 + Lx8 LINE L1 6925 7352 -121 5 1327 421 369 78 19 chr9 97288050 97288525 -26787647 - ERVL-E-int LTR ERVL -3137 2348 1846 5 1327 410 284 170 28 chr9 97288891 97289174 -26786998 - L1M5 LINE L1 -1757 4389 4067 5 1327 214 0 0 100 chr9 97289279 97289319 -26786853 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 5 1327 23204 58 19 6 chr9 97289319 97291548 -26784624 - L1Md_F2 LINE L1 -40 6542 4270 5 1327 441 0 0 0 chr9 97291548 97291597 -26784575 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1327 23204 62 3 6 chr9 97291597 97293008 -26783164 - L1Md_F2 LINE L1 -1614 4269 2875 5 1327 443 291 140 25 chr9 97293031 97293345 -26782827 - L1MD LINE L1 -2598 3548 3199 5 1327 661 207 17 0 chr9 97293364 97293480 -26782692 + B1_Mur1 SINE Alu 24 141 -8 5 1327 436 273 42 78 chr9 97293480 97293671 -26782501 - L1M5 LINE L1 -2935 3211 3028 5 1327 302 310 23 0 chr9 97293739 97293826 -26782346 - MTD LTR MaLR -313 106 18 5 1327 273 273 24 113 chr9 97293881 97294005 -26782167 + MLT1G3 LTR MaLR 4 116 -479 5 1327 21 36 0 0 chr9 97294348 97294376 -26781796 + AT_rich Low_complexity Low_complexity 1 28 0 5 1327 36 23 0 0 chr9 97294416 97294459 -26781713 + AT_rich Low_complexity Low_complexity 1 43 0 5 1327 234 195 13 25 chr9 97295395 97295474 -26780698 + CT-rich Low_complexity Low_complexity 2 79 0 5 1327 4796 39 0 6 chr9 97295497 97296045 -26780127 + L1Md_F2 LINE L1 6026 6570 -12 5 1327 3374 48 2 0 chr9 97296237 97296654 -26779518 + L1_Mm LINE L1 4918 5335 -548 5 1327 944 110 22 0 chr9 97297020 97297156 -26779016 + B2_Mm2 SINE B2 1 139 -56 5 1327 621 40 0 0 chr9 97297164 97297240 -26778932 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1327 2559 184 27 40 chr9 97297240 97297762 -26778410 - RLTR13D2 LTR ERVK -1 1022 508 5 1327 863 199 65 27 chr9 97297754 97297940 -26778232 - RLTR13D2 LTR ERVK -577 229 37 5 1327 459 0 0 0 chr9 97297941 97297992 -26778180 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1327 867 296 47 21 chr9 97298107 97298445 -26777727 - Lx8 LINE L1 -408 7065 6719 5 1327 227 267 0 0 chr9 97298800 97298845 -26777327 + Lx8 LINE L1 6219 6263 -1210 5 1327 373 378 82 9 chr9 97299094 97299313 -26776859 - MLT1K LTR MaLR -349 246 12 5 1327 324 0 0 0 chr9 97300548 97300584 -26775588 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 5 1327 1059 161 75 49 chr9 97302055 97302275 -26773897 + MTD LTR MaLR 194 402 -17 5 1327 282 234 0 0 chr9 97302759 97302866 -26773306 + (CA)n Simple_repeat Simple_repeat 1 107 0 5 1327 441 254 0 0 chr9 97302887 97303109 -26773063 + (CA)n Simple_repeat Simple_repeat 1 222 0 5 1327 236 308 33 0 chr9 97303911 97304002 -26772170 - L1ME5 LINE L1 -259 5935 5842 5 1327 381 266 44 102 chr9 97304649 97304875 -26771297 + L1ME1 LINE L1 3818 4030 -2116 5 1327 402 327 26 0 chr9 97304882 97304995 -26771177 + B1F1 SINE Alu 1 116 -33 5 1327 261 258 11 43 chr9 97305167 97305260 -26770912 + CT-rich Low_complexity Low_complexity 4 93 0 5 1327 479 276 0 0 chr9 97305265 97305370 -26770802 - PB1D10 SINE Alu -10 107 3 5 1327 1085 309 82 67 chr9 97305393 97306653 -26769519 + L1ME1 LINE L1 4136 5416 -2369 5 1327 827 290 57 60 chr9 97306652 97307061 -26769111 - Lx9 LINE L1 -405 7239 6722 5 1327 636 275 37 33 chr9 97307056 97307300 -26768872 + Lx9 LINE L1 7266 7510 -134 5 1327 233 227 80 60 chr9 97307322 97307472 -26768700 + Lx9 LINE L1 7465 7617 -27 5 1327 879 286 87 30 chr9 97307673 97308178 -26767994 + L1ME1 LINE L1 5643 6176 -3 5 1327 229 274 0 56 chr9 97308768 97308857 -26767315 + MIRb SINE MIR 116 199 -69 5 1327 2016 301 65 69 chr9 97309415 97309748 -26766424 - Lx8 LINE L1 -54 7419 7056 5 1327 339 25 0 0 chr9 97309748 97309788 -26766384 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 1327 2016 301 65 69 chr9 97309788 97310582 -26765590 - Lx8 LINE L1 -418 7055 6297 5 1327 370 314 102 26 chr9 97310573 97310956 -26765216 + L1M2 LINE L1 2186 2597 -4252 5 1327 4997 168 44 12 chr9 97311108 97311394 -26764778 - Lx5 LINE L1 -7 7043 6745 5 1327 413 19 0 18 chr9 97311394 97311449 -26764723 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1327 4997 168 44 12 chr9 97311449 97312000 -26764172 - Lx5 LINE L1 -306 6744 6179 5 1327 2152 125 0 0 chr9 97312000 97312319 -26763853 + ORR1A4 LTR MaLR 4 322 -7 5 1327 668 281 75 38 chr9 97312852 97313245 -26762927 - L1MA4A LINE L1 -289 6008 5594 5 1327 600 280 120 28 chr9 97313274 97313524 -26762648 - Lx8 LINE L1 -19 7454 7182 5 1327 1753 132 50 50 chr9 97313524 97313843 -26762329 + ORR1A3 LTR MaLR 8 326 0 5 1327 501 268 25 13 chr9 97314731 97314890 -26761282 - Arthur1 DNA Tip100 -244 3703 3543 5 1327 182 286 48 0 chr9 97315616 97315679 -26760493 + L2 LINE L2 2321 2386 -1033 5 1327 442 288 9 0 chr9 97316838 97316949 -26759223 - RSINE1 SINE B4 0 165 54 5 1327 551 41 20 40 chr9 97316949 97317050 -26759122 + (TTTTTG)n Simple_repeat Simple_repeat 4 102 0 5 1327 1046 39 0 0 chr9 97317050 97317178 -26758994 - B1_Mus1 SINE Alu 0 148 21 5 1327 384 301 57 29 chr9 97317451 97317591 -26758581 + RSINE1 SINE B4 3 146 -19 5 1327 780 42 0 0 chr9 97318650 97318746 -26757426 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 5 1327 1799 147 4 4 chr9 97318752 97319026 -26757146 - Lx2 LINE L1 0 6997 6724 5 1327 1264 36 0 0 chr9 97319203 97319342 -26756830 - B1_Mm SINE Alu -8 139 1 5 1327 2769 42 0 0 chr9 97319342 97319654 -26756518 - L1_Mus1 LINE L1 -11 6556 6245 5 1327 284 321 49 0 chr9 97319844 97320053 -26756119 + (CATGT)n Simple_repeat Simple_repeat 1 219 0 5 1327 236 341 48 0 chr9 97320017 97320184 -26755988 + (CATGC)n Simple_repeat Simple_repeat 5 179 0 5 1327 292 319 102 15 chr9 97320842 97320979 -26755193 + MER58B DNA MER1_type 192 340 -1 5 1327 390 21 0 0 chr9 97321274 97321321 -26754851 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1327 628 277 27 62 chr9 97321793 97322051 -26754121 + LTR37B LTR ERV1 107 355 -113 5 1327 504 347 60 10 chr9 97322425 97322626 -26753546 + MER58A DNA MER1_type 13 223 -1 5 1327 1612 199 80 17 chr9 97322724 97323076 -26753096 - ORR1D1 LTR MaLR 0 374 1 5 1327 201 138 0 0 chr9 97323678 97323707 -26752465 + (GGAGAA)n Simple_repeat Simple_repeat 4 32 0 5 1327 189 0 0 0 chr9 97324074 97324095 -26752077 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1327 260 27 27 0 chr9 97324095 97324132 -26752040 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1327 272 306 0 0 chr9 97324440 97324512 -26751660 + MIRc SINE MIR 78 149 -119 5 1327 435 228 77 26 chr9 97325047 97325164 -26751008 - MER44D DNA MER2_type -577 128 6 5 1327 252 0 0 0 chr9 97325240 97325268 -26750904 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 5 1327 753 250 34 17 chr9 97325300 97325475 -26750697 - B3A SINE B2 -19 179 2 5 1327 521 253 181 35 chr9 97325505 97325792 -26750380 - L1M3 LINE L1 -953 5187 4859 5 1327 1183 313 27 13 chr9 97325858 97326334 -26749838 + L1MC1 LINE L1 5639 6121 -212 5 1327 720 215 75 86 chr9 97326339 97326581 -26749591 + L1MA4 LINE L1 5721 5960 -340 5 1327 315 0 0 0 chr9 97326581 97326616 -26749556 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 5 1327 720 223 109 77 chr9 97326616 97326665 -26749507 + L1MA4 LINE L1 5961 6029 -274 5 1327 227 313 0 0 chr9 97326744 97326811 -26749361 + L1MC1 LINE L1 6121 6187 -146 5 1327 237 33 0 0 chr9 97326841 97326871 -26749301 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1327 210 263 17 17 chr9 97327105 97327163 -26749009 - B3A SINE B2 -136 62 5 5 1327 501 17 0 0 chr9 97327435 97327493 -26748679 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1327 1771 325 73 12 chr9 97327527 97328248 -26747924 - Lx9 LINE L1 -203 7441 6677 5 1327 277 338 141 40 chr9 97328361 97328688 -26747484 - Arthur1B DNA Tip100 -3157 790 431 5 1327 223 182 0 0 chr9 97329564 97329608 -26746564 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1327 551 120 0 9 chr9 97329609 97329718 -26746454 + (GA)n Simple_repeat Simple_repeat 1 108 0 6 1327 1077 101 6 11 chr9 97329973 97330154 -26746018 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1327 1180 82 7 0 chr9 97331386 97331532 -26744640 + B1_Mus1 SINE Alu 1 147 -1 6 1327 22 70 0 0 chr9 97331893 97331936 -26744236 + AT_rich Low_complexity Low_complexity 1 43 0 6 1327 384 22 0 0 chr9 97332097 97332142 -26744030 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1327 2910 282 58 9 chr9 97333212 97333803 -26742369 + Lx8 LINE L1 6415 7025 -448 6 1327 378 0 0 0 chr9 97333803 97333845 -26742327 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1327 2910 282 58 9 chr9 97333845 97334122 -26742050 + Lx8 LINE L1 7026 7324 -149 6 1327 195 42 0 0 chr9 97334135 97334159 -26742013 + (TTGGGG)n Simple_repeat Simple_repeat 6 29 0 6 1327 455 0 0 18 chr9 97336538 97336594 -26739578 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1327 265 296 26 0 chr9 97336626 97336741 -26739431 - L1M LINE L1 -767 5427 5310 6 1327 255 183 37 0 chr9 97337026 97337108 -26739064 + CT-rich Low_complexity Low_complexity 2 86 0 6 1327 279 0 0 0 chr9 97337133 97337164 -26739008 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6 1327 1063 114 13 6 chr9 97337164 97337323 -26738849 - B2_Mm1a SINE B2 -33 160 1 6 1327 2607 246 108 98 chr9 97337408 97338698 -26737474 - RMER1A Other Other -2 1028 2 6 1327 320 306 0 0 chr9 97338789 97338861 -26737311 - RMER1B Other Other -797 269 198 6 1327 1481 192 66 35 chr9 97338861 97339175 -26736997 - RMER17C LTR ERVK 0 410 86 6 1327 938 9 9 0 chr9 97339175 97339286 -26736886 + (GA)n Simple_repeat Simple_repeat 2 113 0 6 1327 1481 174 85 45 chr9 97339286 97339405 -26736767 - RMER17C LTR ERVK -325 85 22 6 1327 668 220 78 0 chr9 97339410 97339551 -26736621 - RMER1B Other Other -866 200 49 6 1327 394 301 131 0 chr9 97342328 97342521 -26733651 + MIR SINE MIR 6 218 -44 6 1327 236 365 26 0 chr9 97342751 97342866 -26733306 - MIRb SINE MIR -38 230 113 6 1327 361 249 45 67 chr9 97343374 97343567 -26732605 + ORR1E LTR MaLR 1 179 -195 6 1327 324 188 0 0 chr9 97343669 97343738 -26732434 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1327 225 0 0 0 chr9 97343739 97343764 -26732408 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1327 876 159 0 14 chr9 97343778 97343918 -26732254 - B1_Mus1 SINE Alu -9 139 2 6 1327 878 212 84 11 chr9 97343972 97344163 -26732009 - B3 SINE B2 0 216 12 6 1327 285 291 42 63 chr9 97351227 97351370 -26724802 + MER58B DNA MER1_type 202 341 0 6 1327 245 296 85 70 chr9 97352843 97353009 -26723163 + L2a LINE L2 3199 3423 -3 6 1327 270 378 28 7 chr9 97353057 97353201 -26722971 + MIRc SINE MIR 90 236 -32 6 1327 375 113 0 0 chr9 97354290 97354361 -26721811 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1327 228 303 144 50 chr9 97356238 97356377 -26719795 + MIRb SINE MIR 31 182 -86 6 1327 324 0 0 0 chr9 97358998 97359034 -26717138 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1327 200 293 83 68 chr9 97359449 97359581 -26716591 - MIRm SINE MIR -138 138 5 6 1327 24 0 0 0 chr9 97359639 97359663 -26716509 + AT_rich Low_complexity Low_complexity 1 24 0 6 1327 313 332 160 25 chr9 97359702 97359946 -26716226 - Charlie7 DNA MER1_type -1853 759 483 6 1327 227 314 48 40 chr9 97361315 97361441 -26714731 - L1ME4a LINE L1 -2 6122 5996 6 1327 270 0 0 0 chr9 97362658 97362688 -26713484 + (TTAG)n Simple_repeat Simple_repeat 2 31 0 6 1327 649 182 74 22 chr9 97364283 97364418 -26711754 - B1_Mur1 SINE Alu -2 147 6 6 1327 258 32 0 0 chr9 97364654 97364685 -26711487 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1327 462 278 42 18 chr9 97364690 97364855 -26711317 - L1MC LINE L1 -2344 5538 5370 6 1327 187 259 121 94 chr9 97364988 97365137 -26711035 + L2a LINE L2 3247 3399 -27 6 1327 284 274 47 86 chr9 97365329 97365457 -26710715 + MLT1J LTR MaLR 27 188 -324 6 1327 269 299 104 64 chr9 97365729 97365854 -26710318 + MIRb SINE MIR 90 219 -49 6 1327 1224 134 0 11 chr9 97366768 97366956 -26709216 - URR1B DNA MER1_type 0 225 40 6 1327 224 283 188 116 chr9 97367525 97367637 -26708535 + MIRb SINE MIR 114 233 -35 6 1327 420 99 0 0 chr9 97368238 97368309 -26707863 + (CAGA)n Simple_repeat Simple_repeat 4 74 0 6 1327 198 306 59 30 chr9 97368624 97368725 -26707447 + MIR SINE MIR 28 131 -131 6 1327 515 16 16 0 chr9 97370331 97370395 -26705777 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1327 358 250 146 83 chr9 97371450 97371594 -26704578 - MER5B DNA MER1_type -25 153 1 6 1327 190 265 167 12 chr9 97371770 97371854 -26704318 - MIRb SINE MIR 0 268 172 6 1327 212 244 0 0 chr9 97371887 97371928 -26704244 + L2a LINE L2 3378 3418 -8 6 1327 235 308 92 46 chr9 97372689 97372798 -26703374 + MLT1A1 LTR MaLR 1 114 -294 6 1327 2082 150 18 60 chr9 97373347 97373730 -26702442 + ORR1B2 LTR MaLR 1 367 0 6 1327 187 378 13 13 chr9 97375249 97375324 -26700848 - MIRb SINE MIR -146 122 48 6 1327 720 306 42 21 chr9 97375603 97375843 -26700329 + MER2 DNA MER2_type 96 340 -5 6 1327 694 282 59 158 chr9 97379882 97380358 -26695814 + L1MA4A LINE L1 4758 5189 -954 6 1327 216 67 0 0 chr9 97380358 97380388 -26695784 + (CCA)n Simple_repeat Simple_repeat 1 30 0 6 1327 694 256 100 40 chr9 97380388 97380671 -26695501 + L1MA4A LINE L1 5190 5448 -852 6 1327 405 0 0 0 chr9 97380805 97380850 -26695322 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1327 378 0 0 0 chr9 97380850 97380891 -26695281 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1327 363 268 57 21 chr9 97380891 97381032 -26695140 + L1MA4A LINE L1 5795 5940 -363 6 1327 284 340 54 45 chr9 97381066 97381177 -26694995 - MIRc SINE MIR -142 126 15 6 1327 544 287 91 67 chr9 97382221 97382475 -26693697 + MER2 DNA MER2_type 85 344 -1 6 1327 941 295 23 12 chr9 97383744 97384001 -26692171 - MER2 DNA MER2_type 0 345 86 6 1327 244 363 8 46 chr9 97384694 97384824 -26691348 + MLT2B3 LTR ERVL 3 127 -427 6 1328 637 292 64 14 chr9 97386710 97386991 -26689181 - L1M5 LINE L1 -330 5794 5500 6 1328 903 172 19 2 chr9 97388371 97388797 -26687375 + (TG)n Simple_repeat Simple_repeat 1 433 0 6 1328 284 309 0 0 chr9 97389940 97390050 -26686122 + (TAA)n Simple_repeat Simple_repeat 1 110 0 6 1328 606 295 56 35 chr9 97390135 97390476 -26685696 + RLTR15 LTR ERVK 1 348 -11 6 1328 632 56 11 0 chr9 97391466 97391555 -26684617 + (TC)n Simple_repeat Simple_repeat 1 90 0 6 1328 240 163 0 0 chr9 97391568 97391611 -26684561 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 6 1328 1019 250 67 75 chr9 97392317 97392693 -26683479 + MTEa LTR MaLR 7 379 0 6 1328 411 38 0 0 chr9 97393730 97393783 -26682389 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1328 3051 79 20 0 chr9 97394181 97394573 -26681599 - MTB LTR MaLR 0 400 1 6 1328 212 86 29 0 chr9 97395809 97395844 -26680328 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1328 342 155 73 11 chr9 97396380 97396471 -26679701 - MIRc SINE MIR -85 177 82 6 1328 252 0 0 0 chr9 97396542 97396570 -26679602 + (CAGAG)n Simple_repeat Simple_repeat 5 32 0 6 1328 232 224 69 0 chr9 97396571 97396629 -26679543 + MER5A1 DNA MER1_type 41 102 -64 6 1328 1703 35 0 0 chr9 97396864 97397066 -26679106 - L1Md_F3 LINE L1 -769 5815 5614 6 1328 4628 47 5 4 chr9 97397066 97397627 -26678545 + L1Md_F3 LINE L1 6022 6583 -1 6 1328 189 0 0 0 chr9 97398305 97398326 -26677846 + (CAA)n Simple_repeat Simple_repeat 2 22 0 6 1328 252 86 0 0 chr9 97399187 97399222 -26676950 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 6 1328 201 74 0 0 chr9 97399766 97399793 -26676379 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1328 1229 115 10 50 chr9 97400980 97401182 -26674990 - Lx4A LINE L1 -495 6563 6370 6 1328 3167 114 21 66 chr9 97401182 97401709 -26674463 + Lx4A LINE L1 6556 7058 0 6 1328 1391 50 0 6 chr9 97402471 97402652 -26673520 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1328 648 0 0 0 chr9 97402652 97402724 -26673448 + (TTC)n Simple_repeat Simple_repeat 3 74 0 6 1328 595 311 98 26 chr9 97403363 97403710 -26672462 - L1M5 LINE L1 -472 5701 5330 6 1328 298 214 131 55 chr9 97403771 97403954 -26672218 - MER113A DNA MER1_type -74 240 44 6 1328 210 338 14 0 chr9 97405355 97405426 -26670746 - MIR SINE MIR -167 95 24 6 1328 1141 102 18 1 chr9 97405666 97405855 -26670317 + ORR1A2 LTR MaLR 1 207 -139 6 1328 1400 98 0 0 chr9 97405852 97406056 -26670116 - ORR1A3-int LTR MaLR -1758 205 2 6 1328 3279 59 0 17 chr9 97406095 97406509 -26669663 + MTB_Mm LTR MaLR 1 407 0 6 1328 575 252 7 35 chr9 97406662 97406806 -26669366 - RSINE1 SINE B4 -22 143 4 6 1328 253 314 0 0 chr9 97407078 97407148 -26669024 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 6 1328 731 211 0 13 chr9 97407211 97407360 -26668812 - B1_Mur3 SINE Alu -1 148 2 6 1328 738 271 20 15 chr9 97407360 97407562 -26668610 - B4A SINE B4 -89 203 1 6 1328 225 266 50 80 chr9 97408427 97408627 -26667545 - L1MC5 LINE L1 -418 7543 7350 6 1328 524 73 12 0 chr9 97408899 97408981 -26667191 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 6 1328 585 159 30 8 chr9 97408983 97409116 -26667056 + (CATA)n Simple_repeat Simple_repeat 4 139 0 6 1328 219 36 0 0 chr9 97409700 97409728 -26666444 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1328 236 301 19 10 chr9 97410783 97410887 -26665285 - L1MEf LINE L1 -4302 1898 1794 6 1328 359 185 111 56 chr9 97412138 97412264 -26663908 - L1MB8 LINE L1 -5 6173 6041 6 1328 839 231 10 5 chr9 97413772 97413972 -26662200 + ORR1D1 LTR MaLR 1 201 -173 6 1328 3113 286 145 24 chr9 97413977 97414357 -26661815 + Lx8 LINE L1 4152 4557 -1320 6 1328 329 0 24 0 chr9 97414357 97414398 -26661774 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1328 3723 287 80 30 chr9 97414398 97417049 -26659123 + Lx8 LINE L1 4558 7464 -9 6 1328 226 333 70 0 chr9 97418590 97418704 -26657468 - LTR16E1 LTR ERVL -106 432 311 7 1328 259 290 87 51 chr9 97419102 97419240 -26656932 - ORR1E LTR MaLR -121 238 96 7 1328 1324 275 102 4 chr9 97419887 97420347 -26655825 - MLT1D LTR MaLR 0 505 1 7 1328 415 292 25 8 chr9 97421510 97421631 -26654541 + B4A SINE B4 1 123 -169 7 1328 262 0 53 0 chr9 97423706 97423744 -26652428 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1328 464 362 55 22 chr9 97424336 97424698 -26651474 + MLT1A LTR MaLR 1 374 0 7 1328 198 0 0 0 chr9 97425000 97425022 -26651150 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 7 1328 480 317 34 29 chr9 97429347 97429555 -26646617 + MLT1J2 LTR MaLR 1 209 -239 7 1328 263 335 103 16 chr9 97429889 97430074 -26646098 + L1M5 LINE L1 5607 5807 -317 7 1328 389 206 0 0 chr9 97430114 97430187 -26645985 + ID_B1 SINE B4 84 156 -68 7 1328 358 297 0 0 chr9 97430187 97430205 -26645967 + PB1D10 SINE Alu 3 93 -24 7 1328 2973 26 6 0 chr9 97430377 97430747 -26645425 + L1Md_F2 LINE L1 6220 6582 0 7 1328 325 236 9 18 chr9 97431008 97431120 -26645052 + (TATG)n Simple_repeat Simple_repeat 2 112 0 7 1328 390 306 90 7 chr9 97431135 97431280 -26644892 - RSINE1 SINE B4 -6 159 3 7 1328 266 307 51 26 chr9 97432169 97432286 -26643886 - MIR SINE MIR -110 152 33 7 1328 204 97 0 0 chr9 97432434 97432465 -26643707 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1328 207 268 35 35 chr9 97432659 97432744 -26643428 - MIR SINE MIR -29 233 149 7 1328 615 134 0 0 chr9 97432928 97433025 -26643147 - ORR1B1 LTR MaLR 0 394 298 7 1328 221 301 65 37 chr9 97433879 97433986 -26642186 + MIR SINE MIR 6 115 -147 7 1328 287 203 125 0 chr9 97435027 97435091 -26641081 + B4A SINE B4 1 72 -220 7 1328 417 39 0 0 chr9 97435092 97435143 -26641029 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1328 197 325 81 49 chr9 97435656 97435779 -26640393 + L3 LINE CR1 2969 3095 -1394 7 1328 410 328 141 4 chr9 97437477 97437754 -26638418 + MLT1I LTR MaLR 82 396 -15 7 1328 287 316 146 0 chr9 97439629 97439787 -26636385 + L2 LINE L2 2573 2753 -666 7 1328 279 330 102 41 chr9 97441222 97441418 -26634754 + MIRb SINE MIR 45 252 -16 7 1328 243 193 289 0 chr9 97441652 97441735 -26634437 + MER45A DNA Tip100 66 172 -6 7 1328 488 320 44 76 chr9 97442366 97442616 -26633556 + Tigger9b DNA MER2_type 2 243 -381 7 1328 438 20 0 0 chr9 97443708 97443759 -26632413 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1328 345 258 54 39 chr9 97445990 97446119 -26630053 - MIRb SINE MIR -52 216 86 7 1328 236 269 25 37 chr9 97446548 97446629 -26629543 + MIR SINE MIR 37 116 -92 7 1328 215 31 31 0 chr9 97446776 97446808 -26629364 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1328 342 0 0 0 chr9 97446912 97446950 -26629222 + (TAA)n Simple_repeat Simple_repeat 1 38 0 7 1328 21 0 0 0 chr9 97447327 97447348 -26628824 + AT_rich Low_complexity Low_complexity 1 21 0 7 1328 592 270 140 56 chr9 97448591 97448984 -26627188 - MER74A LTR ERVL 0 558 133 7 1328 201 175 0 0 chr9 97449530 97449570 -26626602 + G-rich Low_complexity Low_complexity 2 41 0 7 1328 298 246 0 0 chr9 97450203 97450272 -26625900 + MIR SINE MIR 91 159 -103 7 1328 260 345 161 9 chr9 97450274 97450485 -26625687 + MIRb SINE MIR 2 244 -24 7 1328 585 28 0 0 chr9 97451032 97451103 -26625069 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1328 180 0 0 0 chr9 97452409 97452429 -26623743 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1328 581 353 42 53 chr9 97452889 97453266 -26622906 + MLT1J-int LTR MaLR 815 1187 -200 7 1328 357 258 0 0 chr9 97454458 97454524 -26621648 - B4A SINE B4 -129 163 123 7 1328 306 0 0 0 chr9 97454524 97454558 -26621614 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1328 441 0 0 0 chr9 97454558 97454606 -26621566 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 1328 441 281 70 0 chr9 97454606 97454720 -26621452 - B4 SINE B4 -170 122 1 7 1328 235 355 18 0 chr9 97454765 97454875 -26621297 + L2a LINE L2 3312 3423 -3 7 1328 210 71 0 0 chr9 97456413 97456441 -26619731 + (TTA)n Simple_repeat Simple_repeat 1 28 0 7 1328 428 143 0 12 chr9 97456476 97456561 -26619611 + (TG)n Simple_repeat Simple_repeat 1 84 0 7 1328 245 283 128 66 chr9 97456587 97456844 -26619328 - B4 SINE B4 -18 274 2 7 1328 411 38 0 0 chr9 97457518 97457571 -26618601 + (TTG)n Simple_repeat Simple_repeat 2 54 0 7 1328 6074 67 45 9 chr9 97457571 97458289 -26617883 - L1_Mus4 LINE L1 -6 6630 5881 7 1328 2852 61 0 3 chr9 97458289 97458636 -26617536 - ORR1A1 LTR MaLR 0 346 1 7 1328 6074 67 45 9 chr9 97458636 97458734 -26617438 - L1_Mus4 LINE L1 -756 5880 5784 7 1328 379 241 27 68 chr9 97458976 97459123 -26617049 + MLT1A1 LTR MaLR 268 408 0 7 1328 200 312 24 48 chr9 97459447 97459531 -26616641 + L2c LINE L2 3074 3155 -232 7 1328 276 373 1 8 chr9 97460335 97460476 -26615696 - MIRc SINE MIR -110 158 18 7 1328 231 328 62 70 chr9 97462929 97463057 -26613115 + MIR SINE MIR 50 176 -86 7 1328 388 300 156 18 chr9 97463295 97463519 -26612653 - Cheshire DNA MER1_type -2163 257 3 7 1328 513 0 0 0 chr9 97464674 97464731 -26611441 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 7 1328 3037 140 21 32 chr9 97464890 97465423 -26610749 - RLTR11A LTR ERVK 0 528 2 7 1328 312 278 11 11 chr9 97465440 97465531 -26610641 + MER5A1 DNA MER1_type 74 164 -2 7 1328 468 0 0 0 chr9 97468450 97468502 -26607670 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1328 189 0 0 0 chr9 97469267 97469288 -26606884 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7 1328 345 47 0 0 chr9 97469380 97469423 -26606749 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 7 1328 239 267 46 65 chr9 97469427 97469535 -26606637 - MIRm SINE MIR -17 259 154 7 1328 380 302 8 8 chr9 97469635 97469752 -26606420 - PB1D10 SINE Alu 0 117 1 7 1328 273 128 0 0 chr9 97469818 97469865 -26606307 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1328 387 60 0 0 chr9 97471974 97472024 -26604148 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1328 252 0 0 0 chr9 97472223 97472251 -26603921 + (CAA)n Simple_repeat Simple_repeat 3 30 0 7 1328 1146 171 35 48 chr9 97472593 97472820 -26603352 + URR1B DNA MER1_type 2 225 0 7 1328 373 298 57 117 chr9 97474002 97474318 -26601854 - ORR1E LTR MaLR 0 359 63 7 1328 1128 265 86 76 chr9 97474442 97475566 -26600606 - L1MB1 LINE L1 -52 6962 5849 7 1328 1890 284 137 32 chr9 97475620 97475640 -26600532 - L1MB1 LINE L1 -2450 4395 4375 7 1328 6479 22 1 0 chr9 97475640 97476374 -26599798 - L1Md_A LINE L1 -1 6581 5847 7 1328 1890 284 137 32 chr9 97476374 97477545 -26598627 - L1MB1 LINE L1 -2471 4374 3080 7 1328 312 292 0 0 chr9 97477540 97477629 -26598543 - L1MB1 LINE L1 -3942 2900 2812 7 1328 471 279 71 26 chr9 97477999 97478268 -26597904 - L1MB1 LINE L1 -4159 2690 2410 7 1328 517 204 97 0 chr9 97478290 97478403 -26597769 - B3 SINE B2 0 216 93 7 1328 236 312 0 30 chr9 97478412 97478511 -26597661 - L1MB1 LINE L1 -5085 1694 1599 7 1328 437 348 57 24 chr9 97479783 97479995 -26596177 - L1MB1 LINE L1 -5749 1030 812 7 1328 513 0 0 0 chr9 97481307 97481364 -26594808 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1328 612 0 0 0 chr9 97481833 97481901 -26594271 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 1328 378 0 0 0 chr9 97482476 97482518 -26593654 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1328 281 361 20 77 chr9 97483464 97483659 -26592513 - L2c LINE L2 -175 3212 3029 7 1328 357 305 21 0 chr9 97485596 97485691 -26590481 - PB1D10 SINE Alu 0 117 21 7 1328 237 65 0 0 chr9 97485723 97485754 -26590418 + (GGA)n Simple_repeat Simple_repeat 3 33 0 7 1328 258 324 9 43 chr9 97486706 97486822 -26589350 + MLT1A1 LTR MaLR 1 112 -296 7 1328 275 293 12 12 chr9 97487896 97487979 -26588193 + MER45R DNA Tip100 3 85 -1496 7 1328 357 267 57 64 chr9 97487999 97488076 -26588096 + B4A SINE B4 1 81 -211 7 1328 245 27 54 0 chr9 97488076 97488113 -26588059 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1328 357 267 57 64 chr9 97488113 97488175 -26587997 + B4A SINE B4 82 139 -153 7 1328 261 0 0 0 chr9 97488296 97488325 -26587847 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1328 871 215 103 0 chr9 97488989 97489184 -26586988 - B3 SINE B2 0 216 2 7 1328 199 260 0 0 chr9 97489277 97489327 -26586845 - MIRc SINE MIR -129 139 90 7 1328 260 310 34 25 chr9 97489440 97489559 -26586613 + Charlie1a DNA MER1_type 35 154 -1301 7 1328 280 0 50 0 chr9 97489613 97489653 -26586519 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 7 1328 411 282 29 0 chr9 97489759 97489862 -26586310 - PB1D10 SINE Alu -3 114 9 7 1328 255 297 13 13 chr9 97489795 97489870 -26586302 - ID_B1 SINE B4 -67 157 83 7 1328 307 320 61 11 chr9 97490168 97490348 -26585824 + Charlie1a DNA MER1_type 721 909 -546 7 1328 237 330 22 0 chr9 97490350 97490441 -26585731 + MLT1A0 LTR MaLR 6 98 -267 7 1328 722 296 30 9 chr9 97490510 97490742 -26585430 + MLT1A0 LTR MaLR 115 351 -14 7 1328 1049 275 57 20 chr9 97490841 97491279 -26584893 + Charlie1a DNA MER1_type 1001 1454 -1 7 1328 252 292 53 15 chr9 97491522 97491654 -26584518 + MIR SINE MIR 76 212 -50 7 1328 252 220 17 0 chr9 97492619 97492678 -26583494 + MIRb SINE MIR 45 104 -164 7 1328 6106 55 7 0 chr9 97494704 97495450 -26580722 + L1Md_F2 LINE L1 5832 6582 0 7 1328 882 230 59 0 chr9 97495479 97495683 -26580489 - B3 SINE B2 0 216 1 7 1328 298 222 56 0 chr9 97495830 97495920 -26580252 + MER3 DNA MER1_type 70 164 -45 7 1328 373 281 31 0 chr9 97496091 97496187 -26579985 + PB1D7 SINE Alu 11 109 -11 7 1328 253 222 24 47 chr9 97496276 97496361 -26579811 - ORR1D1 LTR MaLR 0 374 292 7 1328 756 197 0 0 chr9 97496374 97496521 -26579651 - ORR1D1 LTR MaLR -227 147 1 7 1328 27 0 0 0 chr9 97497911 97497938 -26578234 + AT_rich Low_complexity Low_complexity 1 27 0 7 1328 402 301 174 34 chr9 97498052 97498539 -26577633 + L1M5 LINE L1 2472 3007 -3139 7 1328 689 282 24 5 chr9 97498539 97498749 -26577423 + B3 SINE B2 1 214 -2 7 1328 402 301 174 34 chr9 97498749 97498819 -26577353 + L1M5 LINE L1 3008 3107 -3039 7 1328 248 32 0 0 chr9 97498848 97498879 -26577293 + U6 snRNA snRNA 1 31 -76 7 1328 603 126 0 0 chr9 97498913 97499008 -26577164 + (TA)n Simple_repeat Simple_repeat 1 95 0 8 1328 265 223 14 211 chr9 97499050 97499192 -26576980 - PB1 SINE Alu -3 124 11 8 1328 464 319 91 61 chr9 97499201 97499349 -26576823 + L1M5 LINE L1 3525 3650 -2496 7 1328 342 0 0 0 chr9 97499349 97499387 -26576785 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1328 464 314 101 63 chr9 97499387 97499795 -26576377 + L1M5 LINE L1 3651 4102 -2044 7 1328 259 266 0 0 chr9 97499936 97500000 -26576172 + B3A SINE B2 1 64 -134 8 1328 367 291 10 10 chr9 97500000 97500104 -26576068 + B3 SINE B2 65 168 -48 1 1328 382 163 77 46 chr9 97501108 97501218 -26574954 - B1_Mur2 SINE Alu -1 148 1 2 1328 1644 122 77 13 chr9 97501407 97501707 -26574465 - ORR1A2 LTR MaLR -8 319 1 3 1328 208 336 69 35 chr9 97502499 97502644 -26573528 + MIRb SINE MIR 81 230 -38 4 1328 381 330 105 66 chr9 97505182 97505487 -26570685 + MLT1A0 LTR MaLR 42 358 -7 5 1328 722 164 24 0 chr9 97505929 97506094 -26570078 + (TA)n Simple_repeat Simple_repeat 2 170 0 6 1328 296 143 0 45 chr9 97506125 97506191 -26569981 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 7 1328 279 0 0 0 chr9 97506205 97506236 -26569936 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 8 1328 492 18 0 0 chr9 97506254 97506311 -26569861 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1328 22 0 0 0 chr9 97507209 97507231 -26568941 + AT_rich Low_complexity Low_complexity 1 22 0 1 1328 343 178 44 15 chr9 97507435 97507572 -26568600 + (TG)n Simple_repeat Simple_repeat 1 141 0 1 1328 1555 308 86 14 chr9 97507576 97508215 -26567957 - Lx8 LINE L1 -381 7092 6408 1 1328 304 302 47 17 chr9 97508546 97508718 -26567454 - L1ME4a LINE L1 -244 5880 5704 1 1328 698 0 12 0 chr9 97510117 97510199 -26565973 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1328 339 85 0 0 chr9 97511357 97511404 -26564768 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 1 1328 326 23 23 0 chr9 97512781 97512824 -26563348 + (AGGGGG)n Simple_repeat Simple_repeat 6 49 0 1 1328 1071 319 104 7 chr9 97514591 97514995 -26561177 - MLT1C LTR MaLR -3 464 22 1 1329 24 0 0 0 chr9 97518281 97518305 -26557867 + AT_rich Low_complexity Low_complexity 1 24 0 1 1329 1791 175 51 87 chr9 97518318 97518731 -26557441 + MTD LTR MaLR 20 417 -2 1 1329 583 202 142 53 chr9 97518734 97518959 -26557213 - MER2 DNA MER2_type -92 253 9 2 1329 3108 264 112 33 chr9 97519406 97520501 -26555671 + Lx9 LINE L1 6292 7473 -171 2 1329 1172 45 18 0 chr9 97520503 97520728 -26555444 + (TCTA)n Simple_repeat Simple_repeat 1 229 0 2 1329 297 109 0 0 chr9 97520862 97520908 -26555264 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1329 218 32 32 0 chr9 97521891 97521922 -26554250 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1329 663 204 0 50 chr9 97522052 97522086 -26554086 - B1_Mm SINE Alu -14 133 71 2 1329 354 256 23 90 chr9 97522086 97522121 -26554051 - MT2B LTR ERVL -341 260 228 2 1329 496 79 0 26 chr9 97522121 97522199 -26553973 - L1_Mus1 LINE L1 0 6567 6492 2 1329 663 204 0 50 chr9 97522199 97522268 -26553904 - B1_Mm SINE Alu -77 70 2 2 1329 354 256 23 90 chr9 97522268 97522296 -26553876 - MT2B LTR ERVL -374 227 137 2 1329 520 207 8 25 chr9 97522440 97522559 -26553613 + MTEa LTR MaLR 260 376 -3 2 1329 977 305 94 44 chr9 97523948 97524767 -26551405 - L1MB8 LINE L1 -73 6105 5235 2 1329 1538 290 46 17 chr9 97524863 97525445 -26550727 - L1MB8 LINE L1 -1287 4859 4261 2 1329 815 274 66 30 chr9 97525495 97525766 -26550406 + MTD LTR MaLR 18 298 -121 3 1329 776 261 14 34 chr9 97525784 97526009 -26550163 + Lx8 LINE L1 7006 7238 -235 3 1329 226 301 13 77 chr9 97526162 97526317 -26549855 - L1MB8 LINE L1 -2229 3917 3773 2 1329 759 181 14 21 chr9 97526346 97526487 -26549685 + B1_Mus2 SINE Alu 8 147 0 3 1329 255 125 0 0 chr9 97526506 97526546 -26549626 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1329 356 266 27 27 chr9 97526603 97526715 -26549457 + MTD LTR MaLR 132 243 -176 3 1329 514 341 11 6 chr9 97526821 97527001 -26549171 - B3A SINE B2 -16 182 2 3 1329 312 312 91 37 chr9 97527103 97527399 -26548773 - L1MB8 LINE L1 -2482 3664 3353 2 1329 312 91 0 0 chr9 97529049 97529093 -26547079 + (CAG)n Simple_repeat Simple_repeat 1 44 0 3 1329 231 36 0 0 chr9 97530164 97530192 -26545980 + (CCCCAG)n Simple_repeat Simple_repeat 4 31 0 3 1329 735 133 67 0 chr9 97530276 97530396 -26545776 - B1_Mur2 SINE Alu -21 128 1 3 1329 373 252 79 0 chr9 97531944 97532071 -26544101 + L1MA6 LINE L1 6156 6292 -8 3 1329 1403 252 50 63 chr9 97532399 97532936 -26543236 + RMER5 LTR ERV1 5 534 0 4 1329 240 237 0 0 chr9 97533632 97533691 -26542481 - MamRep434 DNA TcMar -171 255 197 4 1329 391 320 75 35 chr9 97534454 97534655 -26541517 + MER58A DNA MER1_type 15 223 -1 4 1329 414 0 0 0 chr9 97534992 97535038 -26541134 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1329 270 0 0 0 chr9 97535038 97535067 -26541105 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1329 222 37 0 0 chr9 97535067 97535093 -26541079 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1329 383 20 39 0 chr9 97536119 97536170 -26540002 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 4 1329 347 264 22 0 chr9 97538471 97538562 -26537610 - RSINE1 SINE B4 -62 103 11 4 1329 1518 182 127 8 chr9 97541784 97542138 -26534034 - MTD LTR MaLR -14 405 10 4 1329 255 114 0 0 chr9 97542143 97542187 -26533985 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 4 1329 254 308 84 0 chr9 97543214 97543357 -26532815 + L1MC3 LINE L1 7215 7369 -416 5 1329 660 214 8 34 chr9 97543358 97543530 -26532642 - RMER1B Other Other -3 1063 859 5 1329 229 100 0 77 chr9 97543547 97543612 -26532560 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 5 1329 1442 223 61 4 chr9 97543721 97544040 -26532132 - RMER1B Other Other -156 910 593 5 1329 720 287 73 24 chr9 97544047 97544402 -26531770 - RMER1B Other Other -640 426 45 5 1329 703 281 61 28 chr9 97544414 97544740 -26531432 + L1MC3 LINE L1 7355 7691 -94 5 1329 900 157 0 7 chr9 97544902 97545043 -26531129 - B1_Mus1 SINE Alu -6 142 3 5 1329 489 115 0 0 chr9 97546069 97546147 -26530025 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1329 180 0 0 0 chr9 97546339 97546359 -26529813 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1329 279 288 15 0 chr9 97546932 97546998 -26529174 + MER5A DNA MER1_type 60 126 -63 5 1329 247 301 159 6 chr9 97547855 97548012 -26528160 + MLT1C LTR MaLR 7 187 -203 5 1329 293 354 55 0 chr9 97548030 97548157 -26528015 + B1F2 SINE Alu 10 143 -6 5 1329 348 241 13 0 chr9 97548285 97548364 -26527808 + MLT1C LTR MaLR 320 399 -68 5 1329 675 37 0 0 chr9 97548369 97548451 -26527721 + (TCTCCC)n Simple_repeat Simple_repeat 6 87 0 6 1329 183 42 0 0 chr9 97550051 97550075 -26526097 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1329 1850 123 11 82 chr9 97550984 97551338 -26524834 + ORR1A4 LTR MaLR 1 329 0 6 1329 226 299 8 123 chr9 97551637 97551654 -26524518 - MT2B2 LTR ERVL -310 274 210 6 1329 482 271 0 0 chr9 97551654 97551750 -26524422 - PB1D10 SINE Alu -10 107 12 6 1329 357 343 0 28 chr9 97551663 97551771 -26524401 - ID_B1 SINE B4 -45 179 75 6 1329 259 325 35 9 chr9 97552515 97552630 -26523542 - MIR3 SINE MIR -4 204 87 6 1329 27 49 0 0 chr9 97554558 97554599 -26521573 + AT_rich Low_complexity Low_complexity 1 41 0 6 1329 1203 192 4 18 chr9 97555769 97555997 -26520175 + URR1B DNA MER1_type 1 225 0 6 1329 470 274 102 24 chr9 97556284 97556490 -26519682 - MIR SINE MIR -13 249 28 6 1329 407 264 46 86 chr9 97557350 97557524 -26518648 - MIRb SINE MIR -77 191 25 7 1329 424 185 0 12 chr9 97558492 97558574 -26517598 + RSINE1 SINE B4 49 129 -36 7 1329 685 248 32 40 chr9 97559338 97559595 -26516577 + MTEa LTR MaLR 84 375 -4 7 1329 229 380 37 37 chr9 97560786 97560977 -26515195 + MLT1L LTR MaLR 410 600 -10 7 1329 513 0 0 0 chr9 97561055 97561112 -26515060 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1329 544 312 64 13 chr9 97561151 97561385 -26514787 - Lx7 LINE L1 -349 7347 7102 7 1329 522 227 27 0 chr9 97561380 97561490 -26514682 + Lx7 LINE L1 6986 7098 -598 7 1329 227 329 96 84 chr9 97562149 97562388 -26513784 + L2b LINE L2 3128 3369 -6 7 1329 2179 130 63 11 chr9 97563337 97563686 -26512486 + ORR1B2 LTR MaLR 1 367 0 7 1329 182 289 64 26 chr9 97565833 97565911 -26510261 - MIRb SINE MIR -107 161 81 7 1329 407 19 19 0 chr9 97570470 97570522 -26505650 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1329 1795 62 0 17 chr9 97570591 97570821 -26505351 - L1_Mus1 LINE L1 0 6567 6342 8 1329 362 287 9 9 chr9 97571709 97571818 -26504354 + PB1D10 SINE Alu 1 109 -8 8 1329 182 296 59 30 chr9 97571901 97571949 -26504223 + MIRb SINE MIR 117 166 -102 8 1329 441 0 0 0 chr9 97571949 97571998 -26504174 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1329 182 296 59 30 chr9 97571998 97572050 -26504122 + MIRb SINE MIR 167 219 -49 8 1329 25 0 0 0 chr9 97572642 97572667 -26503505 + AT_rich Low_complexity Low_complexity 1 25 0 8 1329 234 0 0 0 chr9 97573105 97573131 -26503041 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1329 227 324 73 34 chr9 97573421 97573600 -26502572 + MIR SINE MIR 56 241 -21 8 1329 6201 116 21 21 chr9 97573732 97574690 -26501482 - RMER17B LTR ERVK 0 958 1 8 1329 180 135 0 0 chr9 97574717 97574754 -26501418 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1329 325 343 69 88 chr9 97574810 97575072 -26501100 - B4 SINE B4 -28 264 8 8 1329 180 111 0 0 chr9 97577331 97577358 -26498814 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 9 1329 204 235 0 0 chr9 97579349 97579400 -26496772 + A-rich Low_complexity Low_complexity 1 51 0 9 1329 243 0 0 0 chr9 97581591 97581618 -26494554 + (CCA)n Simple_repeat Simple_repeat 2 28 0 9 1329 207 0 0 0 chr9 97581626 97581649 -26494523 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1329 704 185 138 31 chr9 97582003 97582198 -26493974 + B3 SINE B2 1 216 0 9 1329 986 301 65 29 chr9 97583433 97583847 -26492325 + Charlie1b DNA MER1_type 8 436 -87 9 1329 402 306 11 133 chr9 97583897 97584168 -26492004 + MLT2B1 LTR ERVL 69 306 -214 9 1329 558 85 10 21 chr9 97584213 97584309 -26491863 + (CA)n Simple_repeat Simple_repeat 2 96 0 9 1329 186 71 0 0 chr9 97584784 97584812 -26491360 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1329 186 43 0 0 chr9 97586064 97586087 -26490085 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1329 215 262 0 16 chr9 97586215 97586277 -26489895 + MIR SINE MIR 82 142 -66 1 1329 294 341 0 16 chr9 97586626 97586751 -26489421 - MIRb SINE MIR -108 160 38 1 1329 189 0 0 0 chr9 97586839 97586860 -26489312 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 1 1329 404 280 48 42 chr9 97589209 97589377 -26486795 + MLT1A0 LTR MaLR 13 181 -184 1 1329 229 317 115 0 chr9 97589399 97589503 -26486669 + MLT1A0 LTR MaLR 250 365 0 1 1329 183 299 115 0 chr9 97590176 97590263 -26485909 - MIR SINE MIR -62 146 50 1 1329 285 281 31 10 chr9 97590457 97590554 -26485618 + MLT1I LTR MaLR 99 197 -214 1 1329 293 214 0 18 chr9 97592341 97592398 -26483774 + B3A SINE B2 83 138 -60 1 1329 378 0 0 0 chr9 97592398 97592440 -26483732 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1329 459 0 0 0 chr9 97592440 97592490 -26483682 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1329 277 265 15 0 chr9 97592589 97592657 -26483515 + ID4_ SINE ID 5 73 -10 1 1329 243 0 0 0 chr9 97594276 97594303 -26481869 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1329 307 180 0 0 chr9 97594425 97594475 -26481697 + Lx9 LINE L1 7360 7409 -235 1 1329 219 69 0 0 chr9 97594491 97594520 -26481652 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1329 349 143 83 0 chr9 97594527 97594611 -26481561 + Lx9 LINE L1 7551 7641 -3 1 1329 180 0 0 0 chr9 97594615 97594635 -26481537 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1329 1145 36 0 7 chr9 97594635 97594774 -26481398 - B1_Mus2 SINE Alu -8 139 2 1 1329 24 0 0 0 chr9 97594774 97594798 -26481374 + AT_rich Low_complexity Low_complexity 1 24 0 1 1329 225 132 0 0 chr9 97596203 97596241 -26479931 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1329 340 316 65 14 chr9 97596289 97596427 -26479745 + MIR SINE MIR 29 173 -89 1 1329 844 261 69 13 chr9 97596458 97596691 -26479481 + B4 SINE B4 3 248 -44 1 1329 618 96 0 0 chr9 97596752 97596856 -26479316 + (GA)n Simple_repeat Simple_repeat 2 105 0 1 1329 253 350 40 0 chr9 97598556 97598656 -26477516 - MER3 DNA MER1_type -100 109 6 1 1329 378 0 0 0 chr9 97600681 97600723 -26475449 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1329 24 0 0 0 chr9 97605170 97605194 -26470978 + AT_rich Low_complexity Low_complexity 1 24 0 1 1329 5700 46 1 1 chr9 97606420 97607101 -26469071 - L1Md_F2 LINE L1 0 6582 5902 1 1329 230 370 41 25 chr9 97608873 97608995 -26467177 - MIRb SINE MIR -110 158 35 1 1329 811 296 23 75 chr9 97609403 97609750 -26466422 + MLT1A0 LTR MaLR 12 340 -25 1 1329 311 338 30 0 chr9 97611125 97611258 -26464914 - MIR SINE MIR -79 183 47 1 1329 398 244 188 73 chr9 97611321 97611555 -26464617 + B4 SINE B4 28 288 -4 1 1329 201 121 0 0 chr9 97612262 97612295 -26463877 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1329 432 51 0 0 chr9 97612297 97612356 -26463816 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1329 237 294 0 11 chr9 97612360 97612453 -26463719 + GA-rich Low_complexity Low_complexity 2 93 0 1 1329 230 234 0 0 chr9 97614493 97614557 -26461615 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 1 1329 198 0 0 0 chr9 97615833 97615855 -26460317 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1329 381 93 0 0 chr9 97616883 97616937 -26459235 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1329 1460 264 71 42 chr9 97617371 97617894 -26458278 + MER82 DNA MER2_type 41 578 -75 1 1329 760 269 119 58 chr9 97618605 97618865 -26457307 + B4A SINE B4 11 286 -6 1 1329 405 0 0 0 chr9 97619708 97619753 -26456419 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 1 1329 249 33 0 0 chr9 97621319 97621349 -26454823 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1 1329 394 256 24 32 chr9 97621350 97621475 -26454697 - RSINE1 SINE B4 -31 134 11 1 1329 796 268 66 56 chr9 97621526 97621921 -26454251 - L1MA7 LINE L1 -174 6117 5719 1 1329 405 0 0 0 chr9 97621964 97622009 -26454163 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1329 1624 293 87 55 chr9 97622013 97623318 -26452854 + L1M2 LINE L1 4491 5818 -482 1 1329 429 20 0 0 chr9 97623401 97623451 -26452721 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1329 472 282 0 0 chr9 97623926 97624043 -26452129 - B3A SINE B2 -81 117 1 1 1329 191 260 64 13 chr9 97624638 97624716 -26451456 - MIRb SINE MIR -21 247 166 1 1329 509 255 132 25 chr9 97625458 97625655 -26450517 + ID_B1 SINE B4 1 218 -6 1 1329 219 36 0 0 chr9 97626677 97626705 -26449467 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1329 937 108 35 46 chr9 97627301 97627406 -26448766 - B2_Mm2 SINE B2 -22 173 68 1 1329 3268 43 5 8 chr9 97627406 97627801 -26448371 + MTA_Mm LTR MaLR 3 396 0 1 1329 937 108 35 46 chr9 97627801 97627869 -26448303 - B2_Mm2 SINE B2 -128 67 2 1 1329 270 0 0 0 chr9 97627880 97627910 -26448262 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1329 457 163 20 60 chr9 97627910 97628060 -26448112 - RMER17C LTR ERVK -135 275 132 1 1329 198 167 0 0 chr9 97628115 97628151 -26448021 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1329 230 222 0 0 chr9 97629641 97629686 -26446486 + MIR SINE MIR 109 153 -109 1 1329 390 254 287 0 chr9 97632940 97633062 -26443110 + RSINE1 SINE B4 3 159 -6 1 1329 1334 203 127 19 chr9 97633075 97633437 -26442735 + MTD LTR MaLR 7 407 -12 1 1329 192 304 0 0 chr9 97633981 97634037 -26442135 - L2a LINE L2 -10 3416 3361 1 1329 396 0 0 0 chr9 97634148 97634192 -26441980 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1329 262 326 76 0 chr9 97634800 97634944 -26441228 - MER5A1 DNA MER1_type -2 164 10 1 1329 28 0 0 26 chr9 97637147 97637159 -26439013 + AT_rich Low_complexity Low_complexity 1 12 0 1 1329 3347 30 42 0 chr9 97637159 97637561 -26438611 + L1Md_T LINE L1 6164 6582 0 1 1329 28 0 0 26 chr9 97637561 97637587 -26438585 + AT_rich Low_complexity Low_complexity 1 26 0 1 1329 210 171 0 0 chr9 97638492 97638533 -26437639 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1329 237 306 36 27 chr9 97640462 97640573 -26435599 + L1MEf LINE L1 617 728 -5472 1 1329 522 67 0 0 chr9 97640708 97640783 -26435389 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1329 663 145 87 27 chr9 97641360 97641509 -26434663 - URR1B DNA MER1_type 0 225 68 1 1329 337 205 38 13 chr9 97641826 97641905 -26434267 - MIRb SINE MIR -83 185 105 1 1329 242 270 25 71 chr9 97642461 97642579 -26433593 - MIRc SINE MIR -122 146 26 1 1329 374 324 44 0 chr9 97642859 97642995 -26433177 - MER58B DNA MER1_type -13 328 187 1 1329 443 320 38 69 chr9 97644551 97644813 -26431359 - MIR SINE MIR -2 260 7 1 1329 206 333 45 11 chr9 97644862 97644950 -26431222 - L2b LINE L2 -37 3338 3248 1 1329 326 297 71 66 chr9 97645087 97645285 -26430887 + LTR89 LTR ERVL? 40 238 -641 1 1329 1495 222 98 11 chr9 97645330 97645699 -26430473 + MTD LTR MaLR 1 401 -18 1 1329 588 289 216 16 chr9 97646293 97646599 -26429573 - MLT1A LTR MaLR -7 367 1 1 1329 1027 285 39 31 chr9 97648088 97648469 -26427703 - L1MD1 LINE L1 -40 6202 5819 1 166 3978 55 8 4 chr9 97648526 97648697 -26427475 + L1_Mm LINE L1 3832 4006 -1877 1 1330 4536 52 19 3 chr9 97648697 97649261 -26426911 + L1Md_F2 LINE L1 6010 6582 0 1 1330 3978 55 8 4 chr9 97649261 97649601 -26426571 + L1_Mm LINE L1 4007 4345 -1538 1 1330 243 0 0 0 chr9 97649724 97649751 -26426421 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1330 1662 186 48 44 chr9 97650513 97650972 -26425200 + RLTR12B LTR ERVK 1 506 -22 1 1330 198 343 60 47 chr9 97652649 97652799 -26423373 + MIR SINE MIR 33 184 -78 1 1330 824 255 70 47 chr9 97652799 97653140 -26423032 + L1MA6 LINE L1 5952 6300 0 1 1330 444 362 15 5 chr9 97653231 97653431 -26422741 - MER46C DNA MER2_type -3 335 134 1 1330 288 307 34 11 chr9 97653858 97653947 -26422225 + PB1D10 SINE Alu 26 116 -1 1 1330 744 184 19 6 chr9 97654751 97654910 -26421262 - URR1B DNA MER1_type 0 225 65 1 1330 3582 20 0 0 chr9 97655722 97656118 -26420054 + MTA_Mm LTR MaLR 1 396 0 1 1330 195 42 0 0 chr9 97658060 97658084 -26418088 + (GGGGA)n Simple_repeat Simple_repeat 5 28 0 1 1330 292 308 73 27 chr9 97658640 97658790 -26417382 + MIRb SINE MIR 40 196 -72 1 1330 735 238 0 7 chr9 97659120 97659268 -26416904 - B1_Mur1 SINE Alu -2 147 1 1 1330 658 34 22 0 chr9 97660870 97660959 -26415213 + (TC)n Simple_repeat Simple_repeat 2 92 0 1 1330 668 159 0 32 chr9 97661002 97661158 -26415014 + CT-rich Low_complexity Low_complexity 2 152 0 1 1330 213 208 57 0 chr9 97663111 97663164 -26413008 + G-rich Low_complexity Low_complexity 3 58 0 1 1330 1307 176 193 87 chr9 97664407 97664811 -26411361 + MT2A LTR ERVL 3 449 -84 1 1330 303 28 0 0 chr9 97664812 97664848 -26411324 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1330 726 143 279 0 chr9 97664920 97665081 -26411091 + URR1A DNA MER1_type 1 206 -20 1 1330 200 313 43 29 chr9 97666211 97666280 -26409892 + L2b LINE L2 3274 3343 -32 1 1330 227 355 0 0 chr9 97667887 97667949 -26408223 + ID4_ SINE ID 7 68 -15 1 1330 189 0 0 0 chr9 97667954 97667975 -26408197 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1330 596 252 14 0 chr9 97668259 97668406 -26407766 + RSINE1 SINE B4 3 151 -14 1 1330 483 18 0 0 chr9 97669045 97669101 -26407071 + (ATG)n Simple_repeat Simple_repeat 2 57 0 1 1330 750 73 0 0 chr9 97671105 97671215 -26404957 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 1330 620 242 106 5 chr9 97671218 97671417 -26404755 - B4A SINE B4 -44 248 30 1 1330 373 315 85 79 chr9 97673156 97673473 -26402699 + L2 LINE L2 1760 2078 -1341 2 1330 254 327 36 0 chr9 97673924 97674034 -26402138 + L2 LINE L2 2304 2417 -1002 2 1330 314 330 93 0 chr9 97674232 97674414 -26401758 + L2 LINE L2 2686 2884 -535 2 1330 375 282 29 0 chr9 97675552 97675655 -26400517 + B1F SINE Alu 15 120 -29 2 1330 24 32 0 0 chr9 97675746 97675777 -26400395 + AT_rich Low_complexity Low_complexity 1 31 0 2 1330 471 155 0 0 chr9 97676020 97676104 -26400068 + CT-rich Low_complexity Low_complexity 2 85 0 2 1330 386 20 20 0 chr9 97677703 97677754 -26398418 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2 1330 512 267 45 41 chr9 97677902 97678148 -26398024 - RLTR15 LTR ERVK -68 291 45 2 1330 330 167 0 0 chr9 97678282 97678348 -26397824 + C-rich Low_complexity Low_complexity 1 66 0 2 1330 323 320 148 2 chr9 97678348 97678584 -26397588 + MLT1E LTR MaLR 341 635 -18 2 1330 795 255 161 11 chr9 97679740 97680058 -26396114 + ORR1D1 LTR MaLR 1 361 -13 2 1330 224 252 95 43 chr9 97680168 97680284 -26395888 - MIR3 SINE MIR -2 206 85 2 1330 325 253 12 12 chr9 97680445 97680525 -26395647 - MER20 DNA MER1_type -133 86 7 2 1330 223 345 33 46 chr9 97680626 97680778 -26395394 + MIRb SINE MIR 116 265 -3 2 1330 1640 236 69 3 chr9 97681290 97681681 -26394491 - MTD LTR MaLR 0 419 3 2 1330 647 340 132 39 chr9 97682798 97683414 -26392758 + L1MDa LINE L1 57 825 -5808 2 1330 210 143 0 0 chr9 97683428 97683463 -26392709 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1330 535 216 0 183 chr9 97683512 97683613 -26392559 + RMER1A Other Other 45 128 -902 2 1330 1188 62 0 7 chr9 97683613 97683760 -26392412 + B1_Mus2 SINE Alu 1 146 -1 2 1330 535 216 0 183 chr9 97683760 97683822 -26392350 + RMER1A Other Other 129 178 -852 2 1330 3343 208 48 25 chr9 97683803 97684497 -26391675 + RMER1B Other Other 355 1064 -2 2 1330 333 301 122 49 chr9 97684835 97684999 -26391173 + MLT1A0 LTR MaLR 3 178 -187 2 1330 418 246 47 52 chr9 97685936 97686129 -26390043 + L1_Mur3 LINE L1 3568 3759 -2121 2 1330 729 53 0 0 chr9 97686148 97686242 -26389930 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 1330 380 249 126 29 chr9 97686258 97686432 -26389740 + L1MD1 LINE L1 5750 5940 -302 2 1330 408 269 57 23 chr9 97686502 97686677 -26389495 + L1MD1 LINE L1 6061 6241 -1 2 1330 2165 158 36 46 chr9 97689759 97690170 -26386002 + MTB_Mm LTR MaLR 1 407 0 2 1330 236 293 8 114 chr9 97690293 97690424 -26385748 + MLT1H LTR MaLR 433 549 0 2 1330 365 313 137 6 chr9 97690425 97690608 -26385564 + MIR SINE MIR 48 254 -8 2 1330 335 371 62 12 chr9 97690631 97690792 -26385380 + MER91A DNA Tip100 20 188 -8 2 1330 339 266 38 0 chr9 97691223 97691302 -26384870 + PB1D9 SINE Alu 32 113 -7 2 1330 240 328 16 25 chr9 97694254 97694376 -26381796 - MIRb SINE MIR -2 266 146 2 1330 813 269 69 43 chr9 97694477 97694750 -26381422 + L1MA8 LINE L1 5881 6168 -123 2 1330 1335 253 52 19 chr9 97694750 97695117 -26381055 - MTE2a LTR MaLR 0 379 1 2 1330 813 269 69 43 chr9 97695117 97695219 -26380953 + L1MA8 LINE L1 6169 6266 -25 2 1330 267 316 61 0 chr9 97697902 97698000 -26378172 + B1F1 SINE Alu 13 116 -33 2 1330 685 203 0 48 chr9 97699379 97699524 -26376648 + B1_Mur2 SINE Alu 12 149 0 2 1330 240 35 0 0 chr9 97700284 97700313 -26375859 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1330 360 111 0 0 chr9 97700313 97700366 -26375806 + (CATA)n Simple_repeat Simple_repeat 3 56 0 2 1330 510 283 51 33 chr9 97700519 97700741 -26375431 + MLT1C LTR MaLR 1 225 -242 2 1330 799 291 43 60 chr9 97700748 97701030 -26375142 + B4 SINE B4 2 278 -14 2 1330 432 0 0 0 chr9 97701050 97701098 -26375074 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1330 381 333 33 33 chr9 97702174 97702385 -26373787 + RMER15 LTR ERVL 352 562 -13 2 1330 193 369 48 0 chr9 97703028 97703131 -26373041 + MIRb SINE MIR 56 163 -105 2 1330 180 111 0 0 chr9 97703409 97703436 -26372736 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 1330 740 213 33 0 chr9 97703449 97703599 -26372573 - RSINE1 SINE B4 -6 159 5 2 1330 200 219 149 14 chr9 97703604 97703678 -26372494 - MIRb SINE MIR -72 196 113 2 1330 947 251 40 94 chr9 97703866 97704261 -26371911 + ORR1D1 LTR MaLR 1 374 0 2 1330 399 73 0 0 chr9 97704714 97704769 -26371403 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1330 535 292 118 42 chr9 97704832 97705092 -26371080 + L1MD LINE L1 3923 4205 -1941 2 1330 504 0 0 0 chr9 97705092 97705148 -26371024 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1330 535 292 118 42 chr9 97705148 97705499 -26370673 + L1MD LINE L1 4206 4580 -1566 2 1330 6830 55 23 5 chr9 97705605 97706469 -26369703 + L1Md_F2 LINE L1 5680 6559 -23 2 1330 564 312 100 39 chr9 97706487 97707482 -26368690 + L1ME1 LINE L1 4680 5737 -442 2 1330 249 308 49 24 chr9 97707651 97707774 -26368398 + L1ME1 LINE L1 6024 6149 -30 2 1330 209 299 15 23 chr9 97708178 97708308 -26367864 + GA-rich Low_complexity Low_complexity 1 129 0 2 1330 1977 81 60 72 chr9 97710629 97710962 -26365210 - ORR1A4 LTR MaLR 0 329 1 2 1330 1794 264 38 60 chr9 97711167 97711833 -26364339 + L1_Rod LINE L1 4519 5169 -678 2 1330 424 291 7 22 chr9 97712965 97713102 -26363070 - MLT2C1 LTR ERVL -89 308 174 2 1330 1000 287 71 36 chr9 97713967 97714463 -26361709 + Charlie1b DNA MER1_type 1 513 -10 2 1330 227 365 0 0 chr9 97714519 97714593 -26361579 + GA-rich Low_complexity Low_complexity 5 78 0 2 1330 483 18 0 0 chr9 97714815 97714871 -26361301 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1330 198 325 88 0 chr9 97716433 97716513 -26359659 - L2b LINE L2 0 3426 3316 2 1330 256 333 120 0 chr9 97716607 97716715 -26359457 - MER117 DNA MER1_type -36 161 41 2 1330 342 0 0 0 chr9 97717276 97717314 -26358858 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1330 283 371 111 16 chr9 97717725 97718158 -26358014 + L2a LINE L2 2938 3411 -15 2 1330 2631 149 7 7 chr9 97719299 97719718 -26356454 + MTC LTR MaLR 3 421 0 2 1330 25 0 0 0 chr9 97720412 97720437 -26355735 + AT_rich Low_complexity Low_complexity 1 25 0 2 1330 225 231 31 0 chr9 97721918 97721983 -26354189 + MER53 DNA hAT 6 72 -121 2 1330 216 86 0 0 chr9 97722976 97723011 -26353161 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1330 22 56 0 0 chr9 97723446 97723482 -26352690 + AT_rich Low_complexity Low_complexity 1 36 0 2 1330 588 154 301 40 chr9 97726259 97726435 -26349737 + URR1B DNA MER1_type 4 225 0 2 1330 627 323 80 17 chr9 97727199 97727276 -26348896 + MLT2B1 LTR ERVL 2 77 -443 2 1330 360 0 0 0 chr9 97727276 97727316 -26348856 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1330 627 331 79 52 chr9 97727316 97727689 -26348483 + MLT2B1 LTR ERVL 78 463 -138 2 1330 882 164 224 0 chr9 97727689 97727872 -26348300 + URR1A DNA MER1_type 3 226 0 2 1330 240 343 79 106 chr9 97727872 97727902 -26348270 + MLT2B1 LTR ERVL 464 486 -115 2 1330 253 128 43 0 chr9 97727985 97728032 -26348140 + MLT2B1 LTR ERVL 511 559 0 2 1330 575 304 134 81 chr9 97728421 97728779 -26347393 + MTEa LTR MaLR 1 377 -2 2 1330 337 253 10 21 chr9 97728904 97729001 -26347171 - MIRc SINE MIR -94 174 79 2 1330 2186 151 45 11 chr9 97729455 97729836 -26346336 + ORR1B1 LTR MaLR 1 394 0 2 1330 192 77 0 0 chr9 97730762 97730788 -26345384 + (TTCCC)n Simple_repeat Simple_repeat 2 27 0 2 1330 203 311 89 0 chr9 97731326 97731416 -26344756 + MIRb SINE MIR 1 98 -170 2 1330 211 318 186 13 chr9 97731534 97731563 -26344609 + MER5A DNA MER1_type 3 32 -157 2 1330 303 28 0 0 chr9 97731563 97731599 -26344573 + (CAG)n Simple_repeat Simple_repeat 3 38 0 2 1330 211 318 186 13 chr9 97731599 97731725 -26344447 + MER5A DNA MER1_type 33 184 -5 2 1330 494 273 0 36 chr9 97732097 97732264 -26343908 + MER5B DNA MER1_type 1 161 -17 2 1330 252 286 167 20 chr9 97733639 97733828 -26342344 + MLT2B5 LTR ERVL 1 213 -341 2 1330 239 128 64 0 chr9 97734069 97734116 -26342056 + ORR1E LTR MaLR 1 50 -309 2 1330 281 276 16 42 chr9 97734147 97734263 -26341909 + B1_Mur1 SINE Alu 1 148 -1 2 1330 812 295 0 5 chr9 97735136 97735347 -26340825 - B3 SINE B2 -6 210 1 2 1330 188 233 98 16 chr9 97735493 97735554 -26340618 - MIRc SINE MIR -120 148 83 2 1330 2359 264 160 10 chr9 97735968 97736999 -26339173 - Lx8 LINE L1 -11 7462 6277 2 1330 236 309 0 60 chr9 97740250 97740350 -26335822 + MTEa LTR MaLR 1 94 -285 2 1330 225 0 0 0 chr9 97740362 97740387 -26335785 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1330 721 294 53 56 chr9 97740407 97740767 -26335405 + MT2A LTR ERVL 171 529 -4 2 1330 2320 149 43 27 chr9 97741340 97741754 -26334418 - MTC LTR MaLR 0 421 1 2 1330 965 91 56 0 chr9 97742109 97742252 -26333920 - B2_Mm2 SINE B2 -12 183 33 2 1330 198 284 13 13 chr9 97744665 97744740 -26331432 - MIR SINE MIR -25 237 163 2 1330 542 323 58 121 chr9 97745199 97745597 -26330575 + MTEa LTR MaLR 1 373 -6 2 1330 1817 229 74 132 chr9 97745604 97746253 -26329919 - RMER19C LTR ERVK 0 611 1 2 1330 207 237 126 21 chr9 97747048 97747143 -26329029 + L2 LINE L2 1419 1523 -1896 2 1330 185 136 45 15 chr9 97747505 97747572 -26328600 + (TTTG)n Simple_repeat Simple_repeat 1 69 0 2 1330 255 233 27 14 chr9 97747673 97747747 -26328425 + GA-rich Low_complexity Low_complexity 1 75 0 2 1330 315 0 0 0 chr9 97747754 97747789 -26328383 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1330 1007 96 0 0 chr9 97747790 97747925 -26328247 - B1_Mus1 SINE Alu -12 136 2 2 1330 692 333 57 22 chr9 97748089 97748460 -26327712 + MLT1A1 LTR MaLR 25 408 0 2 1330 369 0 0 0 chr9 97749777 97749818 -26326354 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1330 504 0 0 0 chr9 97749818 97749873 -26326299 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1330 1081 282 63 3 chr9 97749960 97750294 -26325878 - ORR1E LTR MaLR -5 354 1 2 1330 280 196 211 67 chr9 97751602 97751706 -26324466 - MER63B DNA AcHobo 0 436 318 2 1330 231 114 0 0 chr9 97752483 97752518 -26323654 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 2 1330 886 34 8 0 chr9 97752624 97752742 -26323430 - B1_Mus1 SINE Alu 0 148 30 3 1330 2323 152 25 17 chr9 97753787 97754189 -26321983 - MTB_Mm LTR MaLR 0 407 3 3 1330 202 68 68 0 chr9 97754884 97754928 -26321244 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3 1330 303 93 0 0 chr9 97755089 97755132 -26321040 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 3 1330 348 240 153 70 chr9 97755148 97755260 -26320912 - ID_B1 SINE B4 -54 170 37 3 1330 1007 213 29 173 chr9 97755260 97755704 -26320468 - ORR1C2 LTR MaLR -1 383 4 3 1330 348 240 153 70 chr9 97755704 97755748 -26320424 - ID SINE ID -188 36 1 3 1330 541 262 8 8 chr9 97755866 97755993 -26320179 + RSINE1 SINE B4 3 129 -36 3 1330 387 0 0 0 chr9 97756699 97756742 -26319430 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1330 22 0 0 0 chr9 97761534 97761556 -26314616 + AT_rich Low_complexity Low_complexity 1 22 0 3 1330 182 296 40 40 chr9 97762575 97762649 -26313523 - MIR SINE MIR -104 172 93 3 1330 241 330 21 31 chr9 97763497 97763594 -26312578 + MLT1J2 LTR MaLR 74 169 -275 3 1330 6067 53 29 12 chr9 97763898 97764667 -26311505 + L1Md_F2 LINE L1 5789 6570 -12 3 1330 1046 89 0 46 chr9 97764685 97764828 -26311344 + B1_Mus1 SINE Alu 1 137 -11 3 1330 195 42 0 0 chr9 97764828 97764852 -26311320 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1330 267 281 69 92 chr9 97766600 97766818 -26309354 + MLT1D LTR MaLR 56 269 -198 3 1330 8491 28 11 0 chr9 97768809 97770227 -26305945 - L1Md_F3 LINE L1 0 6584 5151 3 1330 212 255 86 162 chr9 97770293 97770410 -26305762 - B4 SINE B4 -152 140 33 3 1330 207 0 0 0 chr9 97771002 97771025 -26305147 + (CTG)n Simple_repeat Simple_repeat 1 23 0 3 1330 483 148 0 0 chr9 97771028 97771116 -26305056 + (ATG)n Simple_repeat Simple_repeat 3 90 0 3 1330 180 111 0 0 chr9 97771114 97771141 -26305031 + (GGAGAA)n Simple_repeat Simple_repeat 2 28 0 3 1330 516 32 0 0 chr9 97772775 97772837 -26303335 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1330 192 356 18 46 chr9 97774168 97774277 -26301895 + MIRb SINE MIR 24 129 -139 3 1330 195 186 0 0 chr9 97775341 97775384 -26300788 + CT-rich Low_complexity Low_complexity 2 44 0 3 1330 197 238 79 0 chr9 97776706 97776769 -26299403 - L2a LINE L2 -1 3425 3358 3 1330 333 348 7 7 chr9 97777671 97777807 -26298365 + ORR1E LTR MaLR 1 136 -223 3 1330 1099 271 77 77 chr9 97777822 97778142 -26298030 - MTD LTR MaLR 0 419 99 3 1330 2606 166 28 17 chr9 97778142 97778496 -26297676 + RMER4A LTR ERVK 1 347 -119 3 1330 285 29 0 0 chr9 97778496 97778530 -26297642 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 3 1330 2606 166 28 17 chr9 97778530 97778636 -26297536 + RMER4A LTR ERVK 348 465 -1 3 1330 1099 271 77 77 chr9 97778636 97778730 -26297442 - MTD LTR MaLR -321 98 5 3 1331 939 117 263 0 chr9 97779892 97780071 -26296101 - URR1A DNA MER1_type 0 226 1 3 1331 237 98 0 0 chr9 97781290 97781331 -26294841 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1331 785 276 63 35 chr9 97781331 97781586 -26294586 - B4 SINE B4 -26 266 5 3 1331 360 242 0 0 chr9 97784937 97785032 -26291140 + (TA)n Simple_repeat Simple_repeat 2 96 0 3 1331 3785 177 43 10 chr9 97786074 97786763 -26289409 + Lx5 LINE L1 6337 7048 -2 3 1331 378 0 0 0 chr9 97787303 97787345 -26288827 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1331 387 0 0 0 chr9 97787345 97787387 -26288785 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1331 978 186 102 5 chr9 97788024 97788229 -26287943 + URR1B DNA MER1_type 1 225 0 3 1331 3106 197 44 36 chr9 97788398 97789036 -26287136 + Lx5 LINE L1 6408 7050 0 3 1331 1137 75 7 0 chr9 97789556 97789702 -26286470 + B1_Mus1 SINE Alu 2 148 0 3 1331 213 178 0 0 chr9 97789712 97789757 -26286415 + A-rich Low_complexity Low_complexity 1 45 0 3 1331 186 103 0 0 chr9 97789962 97789991 -26286181 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1331 245 370 28 0 chr9 97792272 97792380 -26283792 + L2a LINE L2 3313 3423 -3 3 1331 316 356 89 39 chr9 97792759 97793095 -26283077 + L1ME4a LINE L1 5769 6121 -3 3 1331 1400 280 37 10 chr9 97793882 97794327 -26281845 + L1MB1 LINE L1 5707 6160 -8 3 1331 406 291 140 45 chr9 97794733 97795182 -26280990 + L1M5 LINE L1 2817 3308 -2838 3 1331 231 333 19 10 chr9 97795459 97795562 -26280610 + MIRc SINE MIR 22 125 -143 3 1331 579 144 0 0 chr9 97795914 97796025 -26280147 + (CA)n Simple_repeat Simple_repeat 2 112 0 3 1331 27 0 0 0 chr9 97797683 97797710 -26278462 + AT_rich Low_complexity Low_complexity 1 27 0 3 1331 309 51 0 0 chr9 97798606 97798645 -26277527 + (CACCAT)n Simple_repeat Simple_repeat 6 44 0 3 1331 240 295 151 20 chr9 97799094 97799246 -26276926 - MER58B DNA MER1_type 0 341 170 3 1331 2617 71 36 0 chr9 97799711 97800047 -26276125 + L1_Mus1 LINE L1 6220 6567 0 3 1331 930 19 0 0 chr9 97800158 97800266 -26275906 + (TC)n Simple_repeat Simple_repeat 2 109 0 3 1331 220 302 59 80 chr9 97800544 97800731 -26275441 + MIRb SINE MIR 58 240 -28 3 1331 387 250 33 0 chr9 97802412 97802504 -26273668 + B4A SINE B4 2 96 -196 3 1331 461 352 25 0 chr9 97802575 97802734 -26273438 + B4A SINE B4 87 249 -43 3 1331 230 51 51 0 chr9 97802789 97802828 -26273344 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 1331 840 20 0 0 chr9 97802829 97802927 -26273245 + (GAA)n Simple_repeat Simple_repeat 3 100 0 3 1331 716 147 0 7 chr9 97802929 97803066 -26273106 + GA-rich Low_complexity Low_complexity 3 138 0 3 1331 229 169 39 0 chr9 97803057 97803134 -26273038 + (CAGAGA)n Simple_repeat Simple_repeat 2 81 0 3 1331 465 19 0 0 chr9 97803143 97803197 -26272975 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1331 470 181 7 0 chr9 97803203 97803347 -26272825 + GA-rich Low_complexity Low_complexity 2 146 0 3 1331 540 30 0 0 chr9 97803933 97803999 -26272173 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1331 444 135 0 0 chr9 97803999 97804073 -26272099 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1331 566 202 18 0 chr9 97804192 97804301 -26271871 - B1_Mur1 SINE Alu -21 128 18 3 1331 215 182 0 0 chr9 97804302 97804335 -26271837 - B1_Mus2 SINE Alu -113 34 2 3 1331 2134 103 3 13 chr9 97804783 97805097 -26271075 + L1_Mm LINE L1 3902 4212 -1671 3 1331 1175 144 0 35 chr9 97805564 97805580 -26270592 - B2_Mm2 SINE B2 0 195 180 3 1331 339 25 0 0 chr9 97805580 97805620 -26270552 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 3 1331 1175 144 0 35 chr9 97805620 97805805 -26270367 - B2_Mm2 SINE B2 -16 179 1 3 1331 603 40 0 0 chr9 97805937 97806011 -26270161 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1331 829 244 128 17 chr9 97808774 97809125 -26267047 + Charlie4a DNA MER1_type 114 503 -5 3 1331 242 182 36 18 chr9 97809139 97809195 -26266977 - MIR SINE MIR -78 130 74 3 1331 2144 109 0 6 chr9 97810653 97810966 -26265206 - L1_Mm LINE L1 -1671 4212 3902 3 1331 201 74 0 0 chr9 97811658 97811685 -26264487 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 3 1331 357 24 0 0 chr9 97812342 97812384 -26263788 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1331 440 274 65 52 chr9 97812387 97812541 -26263631 - B3A SINE B2 -42 156 1 3 1331 764 283 124 50 chr9 97812542 97813010 -26263162 + L1MA4A LINE L1 5518 5984 -1712 3 1331 321 280 50 81 chr9 97813222 97813372 -26262800 - MIR SINE MIR -110 152 9 3 1331 1065 106 0 0 chr9 97817096 97817276 -26258896 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1331 378 0 0 0 chr9 97817276 97817317 -26258855 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1331 450 120 0 0 chr9 97818449 97818524 -26257648 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1331 269 138 200 0 chr9 97819007 97819087 -26257085 + L2c LINE L2 3060 3155 -232 3 1331 377 291 20 60 chr9 97820750 97820900 -26255272 + MER5A DNA MER1_type 34 177 -12 3 1331 398 312 27 60 chr9 97821946 97822130 -26254042 + LTR33 LTR ERVL 255 432 -83 3 1331 257 341 15 22 chr9 97823837 97823972 -26252200 + MIR SINE MIR 108 241 -21 3 1331 21 36 0 0 chr9 97824365 97824393 -26251779 + AT_rich Low_complexity Low_complexity 1 28 0 3 1331 393 117 0 0 chr9 97824689 97824749 -26251423 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 3 1331 26 64 0 0 chr9 97825614 97825661 -26250511 + AT_rich Low_complexity Low_complexity 1 47 0 3 1331 1143 309 69 62 chr9 97826212 97827169 -26249003 + L1_Rod LINE L1 1156 2102 -3745 3 1331 2976 51 10 29 chr9 97827169 97827555 -26248617 + L1Md_F3 LINE L1 6206 6584 0 3 1331 1143 313 69 61 chr9 97827555 97827823 -26248349 + L1_Rod LINE L1 2103 2394 -3453 3 1331 1694 295 42 8 chr9 97828066 97828588 -26247584 + Lx8 LINE L1 6197 6736 -737 3 1331 425 104 13 0 chr9 97828607 97828684 -26247488 + (TTGG)n Simple_repeat Simple_repeat 2 79 0 3 1331 555 128 1 0 chr9 97828775 97828872 -26247300 + B1_Mus2 SINE Alu 50 147 -2 3 1331 1053 83 0 0 chr9 97828873 97829018 -26247154 + (GA)n Simple_repeat Simple_repeat 2 146 0 3 1331 684 338 119 37 chr9 97829026 97829512 -26246660 + Lx8 LINE L1 6855 7380 -93 3 1331 969 270 113 25 chr9 97829693 97830126 -26246046 - L1M2 LINE L1 -1002 5141 4671 3 1331 487 291 33 74 chr9 97830595 97831005 -26245167 + L1MB5 LINE L1 5791 6172 -12 3 1331 261 151 0 0 chr9 97832584 97832637 -26243535 + GA-rich Low_complexity Low_complexity 1 53 0 3 1331 275 225 0 43 chr9 97832916 97833020 -26243152 + GA-rich Low_complexity Low_complexity 1 100 0 3 1331 1412 44 0 6 chr9 97833020 97833201 -26242971 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 1331 275 225 0 43 chr9 97833201 97833212 -26242960 + polypurine Low_complexity Low_complexity 101 111 0 3 1331 406 312 65 47 chr9 97833492 97833724 -26242448 + L1MC5 LINE L1 6720 6957 -1085 3 1331 414 208 94 16 chr9 97833911 97834038 -26242134 + L1MC5 LINE L1 7103 7239 -722 3 1331 405 0 0 0 chr9 97834185 97834230 -26241942 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1331 315 281 94 78 chr9 97834288 97834597 -26241575 + L1MC5 LINE L1 7470 7783 -178 3 1331 516 16 0 0 chr9 97837109 97837170 -26239002 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1331 3309 117 6 19 chr9 97837438 97837951 -26238221 + L1_Mur2 LINE L1 4096 4601 -1276 4 1331 315 105 0 0 chr9 97837951 97838008 -26238164 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1331 306 260 199 20 chr9 97838016 97838212 -26237960 + Lx8 LINE L1 7237 7467 -6 4 1331 246 341 28 21 chr9 97838557 97838698 -26237474 - MIRb SINE MIR -66 202 61 4 1331 273 288 76 50 chr9 97838757 97838916 -26237256 - MIRm SINE MIR -32 230 76 4 1331 272 286 13 0 chr9 97839254 97839331 -26236841 + MIR SINE MIR 25 102 -160 4 1331 216 317 77 28 chr9 97840718 97840861 -26235311 + MIRb SINE MIR 97 246 -22 4 1331 1601 209 37 32 chr9 97841365 97841766 -26234406 - MTD LTR MaLR -12 407 5 4 1331 311 309 81 73 chr9 97843225 97843473 -26232699 + RLTR26 LTR ERVK 168 417 -225 4 1331 800 221 75 5 chr9 97844623 97844810 -26231362 + B3 SINE B2 2 201 -15 4 1331 1471 205 126 8 chr9 97845201 97845575 -26230597 + MTD LTR MaLR 1 418 -1 4 1331 288 176 55 185 chr9 97846751 97846897 -26229275 + RMER15 LTR ERVL 5 131 -444 4 1331 502 284 80 24 chr9 97846952 97847165 -26229007 + RMER15 LTR ERVL 337 561 -14 4 1331 281 268 50 30 chr9 97847299 97847399 -26228773 - MIRb SINE MIR -40 228 127 4 1331 323 312 111 62 chr9 97847451 97847775 -26228397 + MLT1A LTR MaLR 33 372 -2 4 1331 1674 197 39 11 chr9 97847798 97848162 -26228010 + ORR1D1 LTR MaLR 1 374 0 4 1331 649 34 11 11 chr9 97850658 97850747 -26225425 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 1331 456 19 0 0 chr9 97852622 97852675 -26223497 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1331 421 272 36 14 chr9 97852836 97852974 -26223198 - MLT2D LTR ERVL -273 141 1 4 1331 399 301 64 40 chr9 97853296 97853469 -26222703 + Tigger5 DNA MER2_type 7 183 -2223 4 1331 401 270 9 0 chr9 97853484 97853599 -26222573 + Tigger5 DNA MER2_type 2291 2406 0 4 1331 248 244 0 0 chr9 97855136 97855181 -26220991 - RSINE1 SINE B4 -3 162 118 4 1331 3808 152 103 38 chr9 97855300 97855827 -26220345 - RMER17B LTR ERVK 0 958 382 4 1331 515 16 16 0 chr9 97855827 97855891 -26220281 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1331 3808 156 98 37 chr9 97855891 97856272 -26219900 - RMER17B LTR ERVK -577 381 1 4 1331 514 305 35 29 chr9 97856272 97856409 -26219763 - B4A SINE B4 -151 141 4 4 1331 1107 73 0 0 chr9 97856423 97856573 -26219599 + (TC)n Simple_repeat Simple_repeat 2 151 0 4 1331 234 0 0 0 chr9 97856600 97856626 -26219546 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1331 200 375 78 22 chr9 97857633 97857813 -26218359 + L2 LINE L2 2461 2650 -769 4 1331 230 308 24 49 chr9 97858060 97858142 -26218030 + LTR40b LTR ERVL 123 202 -260 4 1331 397 298 52 34 chr9 97858324 97858557 -26217615 + L2 LINE L2 2779 3015 -404 4 1331 229 143 0 0 chr9 97861340 97861382 -26214790 + MLT1K LTR MaLR 465 506 -89 4 1331 242 29 0 28 chr9 97861433 97861469 -26214703 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1331 203 133 22 0 chr9 97861474 97861519 -26214653 + (CAA)n Simple_repeat Simple_repeat 2 47 0 4 1331 6406 199 78 94 chr9 97861530 97861987 -26214185 + Lx7 LINE L1 4114 4624 -1256 4 1331 414 0 0 0 chr9 97861987 97862033 -26214139 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1331 6406 181 72 93 chr9 97862033 97863673 -26212499 + Lx7 LINE L1 4625 6168 -1528 4 1331 303 291 0 0 chr9 97863687 97863799 -26212373 + (CATATA)n Simple_repeat Simple_repeat 3 114 0 4 1331 201 74 0 0 chr9 97863799 97863826 -26212346 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1331 450 0 0 0 chr9 97863826 97863875 -26212297 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 4 1331 303 291 0 0 chr9 97863875 97863895 -26212277 + (CATATA)n Simple_repeat Simple_repeat 1 20 0 4 1331 1769 199 9 21 chr9 97863928 97864262 -26211910 + Lx7 LINE L1 6205 6534 -926 4 1331 2426 225 41 6 chr9 97864260 97864793 -26211379 + Lx7 LINE L1 6808 7359 -337 4 1331 401 36 18 0 chr9 97864794 97864849 -26211323 + (TTGG)n Simple_repeat Simple_repeat 2 57 0 4 1331 23 54 0 0 chr9 97864870 97864907 -26211265 + AT_rich Low_complexity Low_complexity 1 37 0 4 1331 1406 205 26 52 chr9 97864908 97865257 -26210915 + Lx7 LINE L1 7356 7695 -1 4 1331 530 278 94 115 chr9 97865287 97865688 -26210484 - MTD LTR MaLR -13 406 1 4 1331 271 279 70 90 chr9 97866246 97866490 -26209682 + L1ME4a LINE L1 5811 6049 -75 4 1331 459 0 0 0 chr9 97867620 97867671 -26208501 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1331 578 258 40 31 chr9 97868834 97869058 -26207114 - MER96B DNA hAT -187 230 5 4 1331 239 244 0 0 chr9 97870979 97871024 -26205148 + (TTG)n Simple_repeat Simple_repeat 2 46 0 4 1331 408 20 0 0 chr9 97871614 97871663 -26204509 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1331 216 0 0 0 chr9 97871663 97871686 -26204486 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1331 302 311 78 48 chr9 97871811 97872017 -26204155 + L1MEg LINE L1 574 785 -5299 4 1331 329 270 116 9 chr9 97872030 97872142 -26204030 - ID_B1 SINE B4 -17 207 84 4 1331 195 230 23 11 chr9 97873155 97873243 -26202929 + GA-rich Low_complexity Low_complexity 1 89 0 4 1331 288 306 0 0 chr9 97873770 97873943 -26202229 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 1331 315 0 0 0 chr9 97874358 97874393 -26201779 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1331 224 214 107 0 chr9 97876014 97876070 -26200102 - RSINE1 SINE B4 -38 127 66 4 1331 220 221 235 0 chr9 97876458 97876526 -26199646 + MIRc SINE MIR 115 198 -70 4 1331 385 320 68 9 chr9 97878330 97878578 -26197594 - MER113 DNA MER1_type -3 518 39 4 1331 942 103 279 44 chr9 97878579 97878762 -26197410 + URR1A DNA MER1_type 1 226 0 4 1331 24 0 0 0 chr9 97882527 97882551 -26193621 + AT_rich Low_complexity Low_complexity 1 24 0 4 1331 2825 304 75 31 chr9 97884419 97884437 -26191735 - Lx8 LINE L1 -2 7471 7454 4 1331 183 42 0 0 chr9 97884437 97884461 -26191711 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1331 2825 304 75 31 chr9 97884461 97885552 -26190620 - Lx8 LINE L1 -20 7453 6313 4 1331 240 236 18 0 chr9 97885555 97885610 -26190562 - RMER6A LTR ERVK 0 756 701 4 1331 8087 59 0 10 chr9 97885612 97887261 -26188911 - L1Md_F2 LINE L1 0 6582 4950 4 1331 3032 144 25 9 chr9 97887261 97887823 -26188349 - RMER6A LTR ERVK -64 692 122 4 1331 15625 25 5 0 chr9 97887823 97889670 -26186502 - L1_Mm LINE L1 -2158 3725 1869 4 1331 1234 22 0 0 chr9 97889663 97889800 -26186372 + L1Md_T LINE L1 5450 5586 -297 4 1331 8581 35 0 0 chr9 97889800 97890796 -26185376 + L1Md_T LINE L1 5587 6582 0 4 1331 881 104 8 0 chr9 97890825 97890959 -26185213 - RMER6A LTR ERVK -621 135 1 4 1331 401 320 149 52 chr9 97890963 97891365 -26184807 - Lx8 LINE L1 -1163 6310 5870 4 1331 231 36 0 0 chr9 97891641 97891669 -26184503 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1331 27 49 0 0 chr9 97892206 97892247 -26183925 + AT_rich Low_complexity Low_complexity 1 41 0 4 1331 333 0 0 0 chr9 97893962 97893999 -26182173 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1331 211 339 167 16 chr9 97894321 97894567 -26181605 - L2 LINE L2 -649 2770 2488 4 1331 309 240 141 54 chr9 97895123 97895308 -26180864 - Lx9 LINE L1 0 7644 7444 4 1331 279 257 72 159 chr9 97895353 97895561 -26180611 - HAL1 LINE L1 0 2507 2318 4 1331 263 218 59 76 chr9 97897143 97897262 -26178910 + ID_B1 SINE B4 108 224 0 4 1331 348 259 59 84 chr9 97897895 97898097 -26178075 - MTEa LTR MaLR -1 378 182 4 1331 244 323 29 39 chr9 97898264 97898470 -26177702 + MIRb SINE MIR 37 240 -28 4 1331 529 254 36 7 chr9 97899812 97899951 -26176221 + B3A SINE B2 2 144 -54 4 1331 405 0 0 0 chr9 97899968 97900013 -26176159 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1331 360 0 0 0 chr9 97900016 97900056 -26176116 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 1331 224 298 11 45 chr9 97902561 97902649 -26173523 + L2b LINE L2 3287 3371 -4 4 1331 206 345 62 27 chr9 97903777 97903923 -26172249 + MER5B DNA MER1_type 4 154 -24 4 1331 437 323 116 36 chr9 97905141 97905417 -26170755 - MLT1A1 LTR MaLR 0 408 111 4 1331 207 0 0 0 chr9 97908184 97908207 -26167965 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1331 445 207 19 99 chr9 97908508 97908669 -26167503 + B4A SINE B4 1 148 -144 4 1331 429 190 0 0 chr9 97908611 97908690 -26167482 + B1_Mur4 SINE Alu 7 85 -65 4 1331 208 254 16 16 chr9 97908879 97908943 -26167229 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1331 1304 268 19 83 chr9 97908975 97909444 -26166728 - Lx8 LINE L1 -344 7129 6691 4 1331 1305 266 48 24 chr9 97909451 97909828 -26166344 + Lx8 LINE L1 7088 7473 0 4 1331 191 267 0 0 chr9 97910611 97910656 -26165516 - MIRb SINE MIR -10 258 214 4 1332 230 81 27 0 chr9 97911547 97911584 -26164588 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1332 377 263 168 19 chr9 97911592 97911747 -26164425 + L1ME1 LINE L1 5735 5912 -271 4 1332 228 286 16 56 chr9 97911884 97912010 -26164162 + L1MA9 LINE L1 6156 6276 -36 4 1332 488 246 147 75 chr9 97912253 97912560 -26163612 + L1ME4a LINE L1 5773 6101 -23 4 1332 914 219 55 6 chr9 97913419 97913659 -26162513 - ORR1D1 LTR MaLR -104 255 1 4 1332 1042 128 0 0 chr9 97914714 97914862 -26161310 + B1_Mus1 SINE Alu 1 148 0 4 1332 636 14 0 0 chr9 97914885 97914958 -26161214 + (GA)n Simple_repeat Simple_repeat 2 74 0 4 1332 200 297 0 0 chr9 97916180 97916244 -26159928 + A-rich Low_complexity Low_complexity 1 64 0 4 1332 560 14 14 0 chr9 97917374 97917443 -26158729 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1332 245 361 122 28 chr9 97918013 97918332 -26157840 + MLT1G LTR MaLR 148 535 -56 4 1332 299 298 63 16 chr9 97919482 97919608 -26156564 - LTR16C LTR ERVL -2 487 356 4 1332 534 86 0 0 chr9 97920555 97920636 -26155536 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1332 397 149 112 22 chr9 97921229 97921318 -26154854 + PB1D9 SINE Alu 24 120 0 4 1332 561 15 0 0 chr9 97921718 97921784 -26154388 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1332 447 321 76 55 chr9 97922446 97922828 -26153344 + MER20B DNA MER1_type 364 753 -30 4 1332 704 122 0 8 chr9 97922829 97922953 -26153219 + (GA)n Simple_repeat Simple_repeat 2 124 0 5 1332 306 0 0 0 chr9 97924667 97924701 -26151471 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1332 225 259 0 0 chr9 97926314 97926372 -26149800 + MIR SINE MIR 155 212 -50 5 1332 190 247 79 45 chr9 97928152 97928241 -26147931 + MIR SINE MIR 38 129 -133 5 1332 412 350 7 0 chr9 97929558 97929698 -26146474 - MIRb SINE MIR -84 184 44 5 1332 360 0 0 0 chr9 97930581 97930621 -26145551 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1332 320 0 0 24 chr9 97931288 97931329 -26144843 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 1332 22 35 0 0 chr9 97931480 97931509 -26144663 + AT_rich Low_complexity Low_complexity 1 29 0 5 1332 551 85 12 0 chr9 97931856 97931938 -26144234 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 5 1332 296 256 17 39 chr9 97933397 97933576 -26142596 + (CCG)n Simple_repeat Simple_repeat 2 176 0 5 1332 282 87 0 0 chr9 97934566 97934612 -26141560 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1332 514 298 106 38 chr9 97935773 97936066 -26140106 + MLT1H LTR MaLR 224 536 -13 5 1332 1832 150 148 8 chr9 97937188 97937504 -26138668 + MTB_Mm LTR MaLR 1 342 -65 5 1332 351 65 0 0 chr9 97937504 97937550 -26138622 + (TTG)n Simple_repeat Simple_repeat 2 47 0 5 1332 1832 150 148 8 chr9 97937550 97937590 -26138582 + MTB_Mm LTR MaLR 343 406 -1 5 1332 670 338 153 30 chr9 97938399 97938863 -26137309 + MLT1G LTR MaLR 14 538 -53 5 1332 1871 176 66 31 chr9 97938863 97939244 -26136928 - ORR1B1 LTR MaLR 0 394 1 5 1332 670 338 153 30 chr9 97939244 97939270 -26136902 + MLT1G LTR MaLR 539 564 -27 5 1332 685 292 131 6 chr9 97941122 97941459 -26134713 + MLT1B LTR MaLR 4 382 -8 5 1332 3845 96 59 0 chr9 97941542 97942083 -26134089 + MusHAL1 LINE L1 1 573 -2781 5 1332 7311 62 33 0 chr9 97942074 97943044 -26133128 + MusHAL1 LINE L1 2208 3209 -144 5 1332 240 35 0 0 chr9 97943134 97943163 -26133009 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1332 502 277 101 7 chr9 97944971 97945109 -26131063 + RSINE1 SINE B4 3 153 -12 5 1332 1161 143 47 5 chr9 97945295 97945506 -26130666 - URR1B DNA MER1_type 0 225 6 5 1332 722 268 10 20 chr9 97945533 97945731 -26130441 + B3A SINE B2 1 196 -2 5 1332 221 234 15 15 chr9 97945941 97946006 -26130166 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1332 253 271 55 18 chr9 97946023 97946132 -26130040 + L1MEe LINE L1 1033 1145 -3709 5 1332 316 301 97 39 chr9 97947097 97947417 -26128755 + L1M5 LINE L1 5263 5602 -560 5 1332 983 246 14 47 chr9 97948710 97948987 -26127185 + B4 SINE B4 9 276 -16 5 1332 363 271 118 70 chr9 97949018 97949331 -26126841 + L1ME3B LINE L1 921 1248 -4888 5 1332 498 269 69 45 chr9 97949982 97950227 -26125945 + L1MB1 LINE L1 5290 5540 -757 5 1332 655 271 19 3 chr9 97950231 97950415 -26125757 + L1MB1 LINE L1 5662 5845 -323 5 1332 486 229 130 7 chr9 97950654 97950669 -26125503 + L1MA4 LINE L1 5766 5780 -520 5 1332 342 0 0 0 chr9 97950669 97950707 -26125465 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1332 486 244 123 12 chr9 97950707 97950902 -26125270 + L1MA4 LINE L1 5781 5998 -293 5 1332 688 247 35 56 chr9 97951056 97951253 -26124919 + B3A SINE B2 1 193 -5 5 1332 221 30 61 0 chr9 97951297 97951330 -26124842 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 5 1332 21 71 0 0 chr9 97951347 97951389 -26124783 + AT_rich Low_complexity Low_complexity 1 42 0 5 1332 377 306 71 54 chr9 97951389 97951814 -26124358 + L1ME3B LINE L1 2982 3413 -2733 5 1332 21 36 0 0 chr9 97952297 97952325 -26123847 + AT_rich Low_complexity Low_complexity 1 28 0 5 1332 293 284 40 13 chr9 97952678 97952828 -26123344 + L1ME3B LINE L1 3797 3950 -2196 5 1332 334 242 53 21 chr9 97953603 97953728 -26122444 + B1F SINE Alu 1 149 0 5 1332 408 316 131 21 chr9 97954017 97954468 -26121704 + L1ME3B LINE L1 5528 6032 -208 5 1332 1787 125 53 25 chr9 97954569 97954890 -26121282 - ORR1B2 LTR MaLR 0 367 38 5 1332 304 169 26 0 chr9 97955580 97955657 -26120515 + CT-rich Low_complexity Low_complexity 6 84 0 5 1332 354 244 32 141 chr9 97959026 97959213 -26116959 + RLTR15 LTR ERVK 7 163 -196 5 1332 1117 88 0 20 chr9 97959213 97959364 -26116808 + B1_Mus1 SINE Alu 1 148 0 5 1332 354 244 32 141 chr9 97959364 97959424 -26116748 + RLTR15 LTR ERVK 164 226 -133 5 1332 5359 89 11 0 chr9 97959424 97960145 -26116027 - L1_Mus3 LINE L1 -117 5766 5038 5 1332 5581 75 96 6 chr9 97960155 97960933 -26115239 + L1_Mus3 LINE L1 5784 6631 -7 5 1332 386 333 0 0 chr9 97961141 97961279 -26114893 + RMER15 LTR ERVL 403 540 -35 5 1332 1878 273 50 40 chr9 97965276 97965971 -26110201 + RMER1B Other Other 1 592 -474 5 1332 404 194 18 53 chr9 97965939 97966053 -26110119 + RMER1A Other Other 921 1030 0 5 1332 224 297 50 8 chr9 97966214 97966333 -26109839 - MIR SINE MIR -12 250 127 5 1332 242 339 181 45 chr9 97967062 97967843 -26108329 - L2 LINE L2 -2069 1350 464 5 1332 262 280 108 0 chr9 97968333 97968490 -26107682 - L2 LINE L2 -1340 2079 1906 5 1332 1008 179 124 0 chr9 97969758 97969959 -26106213 - URR1A DNA MER1_type 0 226 1 5 1332 1586 225 51 0 chr9 97972387 97972743 -26103429 + ORR1D1 LTR MaLR 1 374 0 5 1332 594 105 29 0 chr9 97973049 97973154 -26103018 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 1332 414 359 27 14 chr9 97973328 97973551 -26102621 - B4 SINE B4 -65 227 2 5 1332 510 17 0 0 chr9 97973711 97973770 -26102402 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1332 1138 69 0 0 chr9 97973773 97973918 -26102254 + B1_Mus1 SINE Alu 2 146 -2 5 1332 594 41 0 0 chr9 97973918 97973991 -26102181 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 1332 442 244 0 80 chr9 97974110 97974248 -26101924 + B1F SINE Alu 9 135 -14 5 1332 243 0 0 0 chr9 97974251 97974278 -26101894 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1332 520 307 5 18 chr9 97974645 97974879 -26101293 - L1M2 LINE L1 -501 5385 5175 5 1332 493 258 103 21 chr9 97975235 97975469 -26100703 + L1M4 LINE L1 4561 4813 -1333 5 1332 952 115 13 0 chr9 97975743 97975899 -26100273 - URR1A DNA MER1_type 0 226 69 5 1332 1040 257 101 23 chr9 97975928 97976275 -26099897 + MTD LTR MaLR 34 407 -12 5 1332 602 302 157 30 chr9 97976583 97977153 -26099019 + L1ME2 LINE L1 5385 6026 -138 5 1332 345 324 16 55 chr9 97977338 97977521 -26098651 + L1M2 LINE L1 4644 4819 -1324 5 1332 530 301 153 7 chr9 97978009 97978290 -26097882 + L1M4 LINE L1 5377 5698 -496 5 1332 260 343 85 49 chr9 97978921 97979310 -26096862 + L2 LINE L2 2662 3064 -355 5 1332 266 230 25 63 chr9 97981292 97981371 -26094801 + Tigger5 DNA MER2_type 180 255 -2151 5 1332 383 332 92 28 chr9 97981457 97981739 -26094433 - L1MEf LINE L1 -5200 1000 701 5 1332 252 273 71 42 chr9 97981783 97981951 -26094221 - L1MEf LINE L1 -5461 633 461 5 1332 282 56 0 0 chr9 97981980 97982016 -26094156 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 5 1332 317 323 0 20 chr9 97982126 97982227 -26093945 - L1MEg LINE L1 -4510 1574 1476 5 1332 683 62 10 0 chr9 97982318 97982415 -26093757 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 1332 357 289 87 60 chr9 97982443 97982708 -26093464 - B4 SINE B4 -18 274 3 5 1332 296 341 125 46 chr9 97982708 97983749 -26092423 - L1MEg LINE L1 -4675 1409 287 5 1332 423 0 0 0 chr9 97984287 97984334 -26091838 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1332 842 190 0 11 chr9 97984948 97985129 -26091043 + GA-rich Low_complexity Low_complexity 2 180 0 5 1332 402 36 18 18 chr9 97985129 97985186 -26090986 + (GAAAA)n Simple_repeat Simple_repeat 4 60 0 5 1332 26 0 0 0 chr9 97985406 97985432 -26090740 + AT_rich Low_complexity Low_complexity 1 26 0 5 1332 470 17 0 17 chr9 97985589 97985649 -26090523 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1332 3853 191 211 5 chr9 97985650 97986488 -26089684 - RMER1A Other Other -19 1011 1 5 1332 1370 298 38 0 chr9 97986535 97986926 -26089246 - RMER1A Other Other -557 509 45 5 1332 2480 240 83 55 chr9 97987599 97988477 -26087695 - MTD-int LTR MaLR -394 1186 1 5 1332 1749 98 119 0 chr9 97988490 97988775 -26087397 + ORR1A2 LTR MaLR 1 319 -8 5 1332 1575 245 26 5 chr9 97988784 97989174 -26086998 - MTD LTR MaLR -14 405 8 5 1332 1030 286 77 21 chr9 97989228 97989617 -26086555 + MTD LTR MaLR 9 419 0 5 1332 350 302 73 82 chr9 97989649 97989855 -26086317 - MIR SINE MIR -31 237 34 5 1332 198 0 0 0 chr9 97989856 97989878 -26086294 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1332 256 306 0 20 chr9 97990552 97990763 -26085409 + (TATATG)n Simple_repeat Simple_repeat 1 206 0 5 1332 768 135 294 56 chr9 97991343 97991523 -26084649 + URR1A DNA MER1_type 2 224 -2 5 1332 1894 100 81 62 chr9 97991919 97992239 -26083933 - ORR1A3 LTR MaLR 0 326 1 5 1332 2508 311 71 22 chr9 97992382 97993421 -26082751 + Lx8 LINE L1 6027 7116 -357 5 1332 449 295 84 36 chr9 97993841 97994092 -26082080 + MLT1E2 LTR MaLR 18 290 -215 5 1332 474 18 0 0 chr9 97994108 97994163 -26082009 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1332 259 278 0 27 chr9 97994207 97994281 -26081891 + MLT1E2 LTR MaLR 388 459 -46 5 1332 450 53 0 0 chr9 97994292 97994349 -26081823 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1332 588 111 0 0 chr9 97994810 97994900 -26081272 + (CTCA)n Simple_repeat Simple_repeat 1 90 0 5 1332 587 329 15 102 chr9 97994900 97995164 -26081008 - B4A SINE B4 0 292 52 5 1332 423 112 0 0 chr9 97996602 97996682 -26079490 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1332 839 320 59 30 chr9 97998067 97998613 -26077559 - L1MB8 LINE L1 -19 6159 5588 5 1332 556 278 21 13 chr9 97998650 97998862 -26077310 - L1MB8 LINE L1 -675 5509 5300 5 1332 5020 124 8 3 chr9 97998867 97999602 -26076570 + Lx4A LINE L1 6319 7057 -1 5 1332 432 0 0 0 chr9 97999602 97999650 -26076522 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1332 687 84 0 0 chr9 97999650 97999745 -26076427 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 5 1332 357 270 131 82 chr9 97999745 97999856 -26076316 - Lx8 LINE L1 -15 7458 7328 5 1332 194 0 0 37 chr9 97999856 97999883 -26076289 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 5 1332 357 270 131 82 chr9 97999883 97999977 -26076195 - Lx8 LINE L1 -146 7327 7243 5 1332 3247 262 34 26 chr9 98000004 98000887 -26075285 - Lx8 LINE L1 -251 7222 6333 1 1332 317 318 23 8 chr9 98001039 98001169 -26075003 - MurSatRep1 Unknown Unknown -1857 280 149 2 1332 284 211 0 14 chr9 98001175 98001247 -26074925 + GA-rich Low_complexity Low_complexity 2 72 0 3 1332 1419 40 0 0 chr9 98001250 98001424 -26074748 + (GGA)n Simple_repeat Simple_repeat 2 175 0 4 1332 294 98 0 0 chr9 98002041 98002092 -26074080 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1332 393 290 122 52 chr9 98002404 98002633 -26073539 + MLT1J1 LTR MaLR 69 313 -131 6 1332 2767 76 67 13 chr9 98002846 98003232 -26072940 - MTB_Mm LTR MaLR 0 407 1 7 1332 576 336 48 28 chr9 98003369 98003620 -26072552 + B4A SINE B4 1 256 -36 8 1332 333 0 0 0 chr9 98003631 98003668 -26072504 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1332 454 228 128 14 chr9 98004259 98004378 -26071794 - MLT1C LTR MaLR -3 502 335 1 1332 2269 122 0 9 chr9 98004378 98004710 -26071462 - ORR1A4 LTR MaLR 0 329 1 1 1332 454 229 40 54 chr9 98004710 98004758 -26071414 - MLT1C LTR MaLR -133 334 289 1 1332 266 204 19 0 chr9 98005306 98005360 -26070812 + L1ME1 LINE L1 6125 6179 0 1 1332 564 156 0 0 chr9 98005673 98005763 -26070409 + PB1D9 SINE Alu 21 110 -10 1 1332 180 349 25 44 chr9 98006735 98006776 -26069396 + MIRc SINE MIR 45 89 -179 1 1332 673 178 54 32 chr9 98006776 98006962 -26069210 + MER53 DNA hAT 1 190 -3 1 1332 194 273 4 126 chr9 98006962 98007079 -26069093 + MIRb SINE MIR 90 200 -68 1 1332 262 345 82 34 chr9 98008246 98008459 -26067713 - MIRb SINE MIR -41 227 1 1 1332 468 0 0 0 chr9 98008487 98008539 -26067633 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1332 450 0 0 0 chr9 98008539 98008588 -26067584 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1332 378 0 0 0 chr9 98010215 98010257 -26065915 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1332 253 172 15 15 chr9 98010299 98010364 -26065808 + GA-rich Low_complexity Low_complexity 1 65 0 2 1332 1851 124 84 9 chr9 98011118 98011452 -26064720 + ORR1B2 LTR MaLR 1 359 -8 2 1332 727 184 12 12 chr9 98012005 98012170 -26064002 + (TATATG)n Simple_repeat Simple_repeat 4 168 0 2 1332 3442 271 90 50 chr9 98012170 98013500 -26062672 + Lx9 LINE L1 6260 7643 -1 2 1332 552 42 0 0 chr9 98013575 98013646 -26062526 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1332 679 276 97 9 chr9 98013679 98013735 -26062437 - B4A SINE B4 -22 270 208 2 1332 681 47 0 0 chr9 98013735 98013820 -26062352 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 1332 679 276 97 9 chr9 98013820 98013990 -26062182 - B4A SINE B4 -85 207 25 2 1332 3500 191 75 0 chr9 98017630 98018284 -26057888 - Lx6 LINE L1 -2 7458 6756 2 1332 21 0 0 0 chr9 98018284 98018305 -26057867 + AT_rich Low_complexity Low_complexity 1 21 0 2 1332 596 222 56 0 chr9 98018305 98018431 -26057741 - Lx6 LINE L1 -1174 6286 6154 2 1332 17346 162 21 33 chr9 98018427 98021298 -26054874 - L1_Mur3 LINE L1 -1281 4599 1762 2 1332 1651 47 0 0 chr9 98021298 98021490 -26054682 + B2_Mm1a SINE B2 1 192 -1 3 1332 17346 183 44 63 chr9 98021490 98022414 -26053758 - L1_Mur3 LINE L1 -4119 1761 927 2 1332 2457 167 17 7 chr9 98022414 98022824 -26053348 + MTC LTR MaLR 5 418 -3 3 1332 2341 215 80 109 chr9 98022824 98023240 -26052932 - L1_Mur3 LINE L1 -6802 926 448 2 1332 1142 155 24 14 chr9 98023241 98023450 -26052722 + URR1B DNA MER1_type 1 211 -14 3 1332 279 263 48 48 chr9 98023491 98023595 -26052577 - L1_Mur3 LINE L1 -7552 176 73 2 1332 213 318 35 12 chr9 98023974 98024060 -26052112 + MER91A DNA Tip100 16 103 -93 3 1332 526 295 32 26 chr9 98025676 98025947 -26050225 - RLTR19 LTR ERVK -5 501 226 3 1332 241 333 67 0 chr9 98026465 98026570 -26049602 - L2b LINE L2 -3 3372 3261 3 1332 1009 261 63 40 chr9 98026754 98027105 -26049067 - ORR1E LTR MaLR 0 359 1 3 1332 190 315 0 36 chr9 98028083 98028139 -26048033 + MIR3 SINE MIR 118 171 -37 3 1332 435 19 0 0 chr9 98028300 98028352 -26047820 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1332 228 111 36 18 chr9 98030515 98030570 -26045602 + CT-rich Low_complexity Low_complexity 3 58 0 3 1332 701 139 0 8 chr9 98030583 98030706 -26045466 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 4 1332 403 241 83 55 chr9 98030715 98030803 -26045369 - Lx8 LINE L1 -359 7114 7020 4 1332 606 51 0 0 chr9 98030803 98030881 -26045291 + (TCC)n Simple_repeat Simple_repeat 2 79 0 4 1332 403 241 83 55 chr9 98030881 98030937 -26045235 - Lx8 LINE L1 -454 7019 6967 4 1332 371 206 27 27 chr9 98031042 98031117 -26045055 - ID4_ SINE ID -7 76 2 4 1332 354 264 11 0 chr9 98031915 98032002 -26044170 - B3A SINE B2 -110 88 1 4 1332 1789 206 49 22 chr9 98033082 98033489 -26042683 + MTD LTR MaLR 2 419 0 4 1332 968 146 150 5 chr9 98033708 98033901 -26042271 - URR1A DNA MER1_type 0 226 6 4 1332 1752 81 72 69 chr9 98035112 98035432 -26040740 + ORR1A4 LTR MaLR 1 321 -8 4 1332 369 202 95 0 chr9 98035594 98035678 -26040494 + B1F SINE Alu 15 106 -43 4 1332 357 200 133 0 chr9 98035602 98035692 -26040480 + ID_B1 SINE B4 107 208 -16 4 1332 876 255 5 33 chr9 98035807 98036018 -26040154 + B3 SINE B2 5 209 -7 5 1332 202 238 31 16 chr9 98036026 98036090 -26040082 + GA-rich Low_complexity Low_complexity 1 65 0 5 1332 489 76 0 0 chr9 98036090 98036156 -26040016 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 5 1332 348 276 0 75 chr9 98036163 98036269 -26039903 + PB1D7 SINE Alu 23 120 0 5 1332 586 292 62 10 chr9 98036368 98036562 -26039610 - MTEb LTR MaLR -138 241 38 5 1332 500 0 0 16 chr9 98036563 98036624 -26039548 + (AAATG)n Simple_repeat Simple_repeat 4 63 0 5 1332 3281 138 158 25 chr9 98037013 98037792 -26038380 + RLTR13D2 LTR ERVK 1 1023 0 5 1332 270 0 0 0 chr9 98038400 98038430 -26037742 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1332 479 32 0 0 chr9 98038640 98038703 -26037469 + L1Md_T LINE L1 6520 6582 0 5 1332 352 377 28 20 chr9 98039134 98039486 -26036686 + L1M5 LINE L1 4211 4565 -1581 5 1332 528 16 0 0 chr9 98040037 98040098 -26036074 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1332 301 286 22 0 chr9 98040672 98040763 -26035409 + LTR33A LTR ERVL 412 504 -16 6 1332 276 158 0 0 chr9 98041007 98041064 -26035108 + GA-rich Low_complexity Low_complexity 2 58 0 6 1332 441 0 0 0 chr9 98041728 98041777 -26034395 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1333 440 328 35 20 chr9 98042097 98042147 -26034025 + ID SINE ID 21 73 -151 6 1333 423 0 0 0 chr9 98042147 98042194 -26033978 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1333 440 328 35 20 chr9 98042194 98042342 -26033830 + ID_B1 SINE B4 74 221 -3 6 1333 545 0 15 0 chr9 98043925 98043990 -26032182 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1333 434 263 57 118 chr9 98044159 98044581 -26031591 - L1MC5 LINE L1 -84 7877 7494 6 1333 3271 33 130 9 chr9 98044581 98045005 -26031167 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1333 434 263 57 118 chr9 98045005 98045125 -26031047 - L1MC5 LINE L1 -468 7493 7368 6 1333 332 294 75 14 chr9 98045457 98045666 -26030506 - MLT1G LTR MaLR -297 282 11 6 1333 261 119 0 0 chr9 98045730 98045772 -26030400 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 1333 807 240 5 40 chr9 98045807 98046007 -26030165 - B3A SINE B2 0 198 6 7 1333 610 272 22 133 chr9 98046012 98046372 -26029800 - L1MC5 LINE L1 -1025 6936 6617 6 1333 388 286 47 8 chr9 98046492 98046619 -26029553 + B1F1 SINE Alu 10 141 -8 7 1333 280 254 0 0 chr9 98046934 98046993 -26029179 - RMER30 DNA MER1_type -143 59 1 7 1333 522 46 0 0 chr9 98047037 98047102 -26029070 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 7 1333 491 287 95 5 chr9 98047443 98047632 -26028540 - L1M3 LINE L1 -500 5683 5478 7 1333 231 23 93 0 chr9 98047896 98047939 -26028233 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1333 257 158 69 17 chr9 98048083 98048141 -26028031 - MTD LTR MaLR 0 419 359 7 1333 21 0 0 0 chr9 98048168 98048189 -26027983 + AT_rich Low_complexity Low_complexity 1 21 0 7 1333 651 264 98 75 chr9 98048189 98048431 -26027741 - MTD LTR MaLR -157 262 6 7 1333 373 241 0 60 chr9 98049385 98049469 -26026703 - ID4_ SINE ID -3 80 2 7 1333 394 196 10 10 chr9 98049547 98049645 -26026527 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 8 1333 270 339 69 0 chr9 98049705 98049923 -26026249 + L1ME1 LINE L1 5918 6150 -29 8 1333 21 36 0 0 chr9 98049995 98050023 -26026149 + AT_rich Low_complexity Low_complexity 1 28 0 8 1333 231 167 0 0 chr9 98050731 98050773 -26025399 + GA-rich Low_complexity Low_complexity 2 43 0 8 1333 230 21 41 41 chr9 98051098 98051147 -26025025 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 8 1333 929 151 189 26 chr9 98053582 98053773 -26022399 - URR1B DNA MER1_type -3 222 1 8 1333 871 247 82 5 chr9 98054732 98054952 -26021220 - MTEb LTR MaLR 0 379 143 8 1333 243 0 0 0 chr9 98056023 98056050 -26020122 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1333 313 295 6 18 chr9 98056821 98056937 -26019235 + PB1D10 SINE Alu 1 114 -35 8 1333 1074 144 0 0 chr9 98056950 98057130 -26019042 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 1333 788 271 86 12 chr9 98057211 98057454 -26018718 + B4A SINE B4 32 292 0 9 1333 520 150 18 0 chr9 98057493 98057606 -26018566 + (CA)n Simple_repeat Simple_repeat 1 115 0 9 1333 274 321 134 0 chr9 98057751 98057885 -26018287 + MIR SINE MIR 87 238 -24 9 1333 522 259 171 33 chr9 98058810 98059057 -26017115 + MLT1F LTR MaLR 104 375 -173 9 1333 234 0 0 0 chr9 98060004 98060030 -26016142 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 9 1333 524 167 8 0 chr9 98060034 98060154 -26016018 + CT-rich Low_complexity Low_complexity 1 121 0 9 1333 909 271 8 4 chr9 98060154 98060421 -26015751 - L1MA6 LINE L1 -5 6295 6028 9 1333 209 298 159 12 chr9 98060781 98060944 -26015228 - L2 LINE L2 -345 3074 2888 9 1333 378 0 0 0 chr9 98060998 98061040 -26015132 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1333 344 288 33 25 chr9 98062066 98062187 -26013985 - L2a LINE L2 0 3426 3305 9 1333 1063 211 9 14 chr9 98063012 98063224 -26012948 + B3 SINE B2 1 211 -5 1 1333 312 292 28 9 chr9 98063654 98063761 -26012411 + B3 SINE B2 107 215 -1 1 1333 346 302 87 60 chr9 98066121 98066339 -26009833 + MLT1D LTR MaLR 22 245 -260 1 1333 244 262 0 0 chr9 98066426 98066487 -26009685 + MLT1D LTR MaLR 538 598 -29 1 1333 39145 5 0 1 chr9 98066768 98072354 -26003818 + L1Md_A LINE L1 7 5586 -297 1 1333 9239 1 0 0 chr9 98072354 98073350 -26002822 + L1Md_A LINE L1 5587 6582 0 1 1333 1176 289 40 27 chr9 98074382 98074858 -26001314 - Helitron3Na_Mam RC Helitron -4 482 1 1 1333 495 0 0 0 chr9 98075214 98075269 -26000903 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1333 378 0 0 0 chr9 98075269 98075310 -26000862 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1333 625 300 91 24 chr9 98076573 98076860 -25999312 + MER2 DNA MER2_type 33 338 -7 1 1333 564 211 49 49 chr9 98076905 98077069 -25999103 - MLT1B LTR MaLR -87 303 140 1 1333 344 301 173 20 chr9 98078722 98078976 -25997196 + L2c LINE L2 3085 3377 -10 1 1333 228 313 91 26 chr9 98079611 98079765 -25996407 + L1MC LINE L1 5357 5520 -2362 1 1333 209 301 43 11 chr9 98080937 98081031 -25995141 - L2a LINE L2 -2 3424 3328 1 1333 236 270 176 20 chr9 98081277 98081379 -25994793 + L2c LINE L2 3046 3163 -224 1 1333 324 0 0 0 chr9 98081610 98081646 -25994526 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1333 561 165 267 47 chr9 98082449 98082621 -25993551 + B3 SINE B2 6 215 -1 1 1333 402 21 0 0 chr9 98082631 98082678 -25993494 + (GAAA)n Simple_repeat Simple_repeat 4 50 0 1 1333 185 317 23 68 chr9 98082930 98083018 -25993154 + MIR3 SINE MIR 93 176 -32 1 1333 560 324 24 24 chr9 98083278 98083487 -25992685 + MER20 DNA MER1_type 8 216 -3 1 1333 625 262 18 12 chr9 98083658 98083824 -25992348 + MER45A DNA Tip100 5 171 -7 1 1333 451 290 205 4 chr9 98085476 98085715 -25990457 + B4A SINE B4 2 288 -4 1 1333 510 325 60 25 chr9 98086021 98086220 -25989952 + MER63A DNA AcHobo 5 210 0 1 1333 2940 92 3 0 chr9 98089055 98089437 -25986735 + Lx3C LINE L1 6361 6743 -233 1 1333 385 259 12 0 chr9 98089441 98089526 -25986646 - MTD LTR MaLR -239 180 95 1 1333 24 0 0 0 chr9 98089531 98089555 -25986617 + AT_rich Low_complexity Low_complexity 1 24 0 1 1333 1517 120 149 81 chr9 98090350 98090658 -25985514 - ORR1A4 LTR MaLR 0 329 1 1 1333 205 298 0 0 chr9 98091638 98091695 -25984477 + A-rich Low_complexity Low_complexity 1 57 0 1 1333 348 270 28 68 chr9 98092840 98092959 -25983213 + MLT1A1 LTR MaLR 7 120 -254 1 1333 242 258 0 0 chr9 98092999 98093061 -25983111 + ORR1E LTR MaLR 80 141 -218 1 1333 459 0 0 0 chr9 98093983 98094034 -25982138 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1333 1786 172 72 0 chr9 98094430 98094790 -25981382 + ORR1B1 LTR MaLR 1 386 -8 1 1333 282 303 46 0 chr9 98095242 98095351 -25980821 + MER5B DNA MER1_type 45 158 -20 1 1333 645 299 196 0 chr9 98095644 98095955 -25980217 - L1MCa LINE L1 -2117 4204 3833 1 1333 1906 271 95 73 chr9 98095973 98097047 -25979125 - L1MCa LINE L1 -2545 3776 2679 1 1333 7415 189 26 40 chr9 98097066 98097211 -25978961 - Lx5 LINE L1 -5 7045 6917 1 1333 1252 63 11 0 chr9 98097211 98097386 -25978786 + (GGAGAA)n Simple_repeat Simple_repeat 1 177 0 1 1333 22413 170 60 22 chr9 98097386 98103156 -25973016 - Lx5 LINE L1 -134 6916 920 1 1333 206 32 32 0 chr9 98103156 98103187 -25972985 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1333 1348 238 62 35 chr9 98103187 98103289 -25972883 - Lx5 LINE L1 -6809 919 813 1 1333 732 254 54 36 chr9 98103388 98103719 -25972453 - L1MCa LINE L1 -3638 2683 2347 1 1333 401 301 68 14 chr9 98103754 98103902 -25972270 - RSINE1 SINE B4 -5 160 5 1 1333 331 231 312 34 chr9 98103903 98104140 -25972032 - L1MCa LINE L1 -4140 2368 2066 1 1333 180 77 0 0 chr9 98104170 98104196 -25971976 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1 1333 274 298 0 0 chr9 98104229 98104286 -25971886 - PB1D10 SINE Alu -37 80 24 1 1333 263 265 35 24 chr9 98104291 98104376 -25971796 + CT-rich Low_complexity Low_complexity 2 87 0 1 1333 714 164 103 0 chr9 98104456 98104602 -25971570 + L1M3 LINE L1 5049 5209 -931 1 1333 6672 138 32 1 chr9 98104740 98106099 -25970073 - Lx LINE L1 -10 6644 5263 1 1333 11520 78 3 22 chr9 98106431 98108698 -25967474 - L1_Mus1 LINE L1 -1 6566 4344 1 1333 543 297 137 4 chr9 98108744 98109014 -25967158 + L1MCa LINE L1 1756 2061 -4447 1 1333 361 234 20 41 chr9 98109027 98109125 -25967047 + RSINE1 SINE B4 2 97 -68 1 1333 295 266 83 18 chr9 98109213 98109384 -25966788 + L1M4c LINE L1 2319 2491 -4611 1 1333 357 275 40 32 chr9 98109568 98109692 -25966480 + L1M4c LINE L1 2709 2833 -4175 1 1333 498 199 102 41 chr9 98109702 98109849 -25966323 + L1M4c LINE L1 2970 3125 -3875 1 1333 674 173 0 89 chr9 98109850 98109984 -25966188 + B1_Mus1 SINE Alu 16 139 -9 1 1333 488 68 14 0 chr9 98109984 98110057 -25966115 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 1 1333 674 173 0 89 chr9 98110057 98110068 -25966104 + B1_Mus1 SINE Alu 140 148 0 1 1333 1986 290 56 37 chr9 98110073 98111250 -25964922 + L1M4c LINE L1 3120 4318 -2682 1 1333 316 298 48 0 chr9 98111264 98111368 -25964804 - L1MCa LINE L1 -4823 1685 1577 1 1333 531 252 106 23 chr9 98111735 98111999 -25964173 - L1MCa LINE L1 -4999 1509 1224 1 1333 338 226 9 0 chr9 98111999 98112105 -25964067 + (TA)n Simple_repeat Simple_repeat 1 107 0 1 1333 490 243 67 46 chr9 98112115 98112309 -25963863 - L1MCa LINE L1 -5294 1214 1017 1 1333 1540 192 125 19 chr9 98112347 98112724 -25963448 + MTD LTR MaLR 3 419 0 1 1333 2889 241 150 53 chr9 98112724 98113869 -25962303 + MTD-int LTR MaLR 1 1256 -2 1 1333 1395 263 79 8 chr9 98113871 98114262 -25961910 + MTD LTR MaLR 1 419 0 1 1333 635 231 79 9 chr9 98114494 98114708 -25961464 - L1MCa LINE L1 -5456 1052 824 1 1333 577 256 16 68 chr9 98114922 98115229 -25960943 + ORR1E LTR MaLR 1 354 -5 1 1333 280 277 0 30 chr9 98115236 98115303 -25960869 - L1MCa LINE L1 -5917 591 527 1 1333 689 330 88 29 chr9 98115394 98115850 -25960322 - L1MCa LINE L1 -6025 483 1 1 1333 1911 125 59 3 chr9 98116731 98117051 -25959121 + ORR1A1 LTR MaLR 1 338 -8 1 1333 240 216 96 57 chr9 98118797 98118954 -25957218 + L1MC4a LINE L1 5792 5954 -1928 1 1333 622 322 58 0 chr9 98119414 98119622 -25956550 - Lx8 LINE L1 -266 7207 6988 1 1333 276 223 82 31 chr9 98119654 98119751 -25956421 - PB1D9 SINE Alu 0 120 19 1 1333 180 0 0 0 chr9 98119831 98119851 -25956321 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1333 226 274 20 0 chr9 98120023 98120074 -25956098 + L1MC4a LINE L1 6664 6715 -1167 1 1333 877 116 9 0 chr9 98120198 98120335 -25955837 + Lx2 LINE L1 6528 6643 -354 1 1333 1315 105 61 14 chr9 98120336 98120548 -25955624 + Lx2 LINE L1 6776 6997 0 1 1333 23 0 0 0 chr9 98120611 98120634 -25955538 + AT_rich Low_complexity Low_complexity 1 23 0 1 1333 1527 277 64 75 chr9 98120634 98121167 -25955005 + L1MC5 LINE L1 6852 7366 -595 1 1333 270 0 0 0 chr9 98121167 98121197 -25954975 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1333 1527 277 64 75 chr9 98121197 98121741 -25954431 + L1MC5 LINE L1 7367 7917 -44 1 1333 444 191 0 0 chr9 98122001 98122090 -25954082 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1333 209 39 0 0 chr9 98122090 98122116 -25954056 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1333 1637 206 58 8 chr9 98122144 98122521 -25953651 - MTD LTR MaLR -14 405 10 1 1333 234 290 70 51 chr9 98122604 98122721 -25953451 - MIRc SINE MIR -111 157 36 1 1333 1131 147 83 0 chr9 98122729 98122933 -25953239 - URR1A DNA MER1_type -5 221 1 1 1333 310 302 0 19 chr9 98123742 98123850 -25952322 + MLT1A1 LTR MaLR 291 396 -12 1 1333 242 321 62 27 chr9 98125372 98125484 -25950688 + MER5A DNA MER1_type 69 184 -5 1 1333 441 0 0 0 chr9 98126818 98126867 -25949305 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1333 522 0 0 0 chr9 98126867 98126924 -25949248 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1333 332 283 32 82 chr9 98128069 98128227 -25947945 + RLTR42-int LTR ERVK 1227 1376 -4146 1 1333 303 391 0 0 chr9 98130227 98130363 -25945809 - MIRb SINE MIR -95 173 32 1 1333 231 36 0 0 chr9 98130500 98130528 -25945644 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1333 690 365 95 66 chr9 98132058 98132677 -25943495 - MER45C DNA Tip100 -316 637 1 1 1333 387 274 93 50 chr9 98133095 98133336 -25942836 + MIR SINE MIR 6 257 -11 1 1333 1470 58 0 25 chr9 98135382 98135578 -25940594 + L1_Mus4 LINE L1 5704 5894 -742 1 1333 501 59 0 0 chr9 98135578 98135646 -25940526 + L1_Mus4 LINE L1 6498 6565 -1 1 1333 1172 144 0 32 chr9 98135646 98135667 -25940505 + Lx5 LINE L1 5895 5914 -1136 1 1333 222 333 33 0 chr9 98136943 98137003 -25939169 - ID4 SINE ID -1 82 21 1 1333 340 182 78 0 chr9 98137003 98137080 -25939092 + HAL1-3A_ME LINE L1 1980 2062 -796 1 1333 550 171 0 16 chr9 98138432 98138557 -25937615 + GA-rich Low_complexity Low_complexity 2 124 0 1 1333 1347 72 0 0 chr9 98138559 98138739 -25937433 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1333 2067 100 20 89 chr9 98138891 98139241 -25936931 + ORR1A3 LTR MaLR 1 326 0 1 1333 243 350 0 20 chr9 98140672 98140771 -25935401 + BC1_Mm scRNA scRNA 3 99 -53 1 1333 767 289 48 71 chr9 98140889 98141243 -25934929 + ORR1E LTR MaLR 7 352 -7 1 1333 375 307 31 38 chr9 98141603 98141762 -25934410 + L1MC LINE L1 5621 5778 -2104 1 1333 285 29 0 0 chr9 98141762 98141796 -25934376 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 1 1333 2002 132 61 40 chr9 98142030 98142409 -25933763 - MTC LTR MaLR 0 421 35 1 1333 216 0 0 0 chr9 98142967 98142991 -25933181 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1333 1177 274 47 34 chr9 98142991 98143445 -25932727 - RMER20B LTR ERVK -51 465 10 1 1333 980 238 112 53 chr9 98143574 98144004 -25932168 - RMER13A LTR ERVK -392 468 14 1 1333 347 256 76 61 chr9 98144113 98144337 -25931835 + L1ME3 LINE L1 5925 6150 -23 1 1333 321 140 43 0 chr9 98145091 98145184 -25930988 + (CAGA)n Simple_repeat Simple_repeat 4 100 0 1 1333 283 344 16 8 chr9 98146759 98146888 -25929284 + LTR33C LTR ERVL 22 151 -478 1 1333 311 105 18 0 chr9 98146888 98146945 -25929227 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1333 243 307 34 11 chr9 98147059 98147148 -25929024 + MTEb LTR MaLR 278 368 -11 1 1333 589 297 36 21 chr9 98147254 98147533 -25928639 + MTE-int LTR MaLR 61 343 -1237 1 1333 701 277 68 25 chr9 98148583 98148864 -25927308 + L1ME5 LINE L1 5643 5935 -259 1 1333 261 353 118 20 chr9 98148897 98149143 -25927029 - MER65D LTR ERV1 0 473 204 1 1333 221 346 33 30 chr9 98149544 98149675 -25926497 + MIR SINE MIR 44 170 -92 1 1333 464 323 44 31 chr9 98149874 98150034 -25926138 + RSINE1 SINE B4 3 164 -1 1 1333 36201 35 1 1 chr9 98150473 98157176 -25918996 + L1Md_T LINE L1 1 5589 -297 1 1333 9177 5 0 0 chr9 98157176 98158203 -25917969 + L1Md_T LINE L1 5590 6585 0 1 1333 410 202 18 0 chr9 98158643 98158752 -25917420 - ORSL DNA Tip100 -26 249 139 1 1333 309 315 102 6 chr9 98158909 98159075 -25917097 - MIRb SINE MIR -19 249 68 2 1333 225 0 0 0 chr9 98159113 98159138 -25917034 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1333 779 342 71 33 chr9 98159291 98159427 -25916745 - MLT2B2 LTR ERVL -3 512 367 2 1333 4764 70 0 0 chr9 98159427 98160011 -25916161 + MT2B2 LTR ERVL 1 584 0 2 1333 779 342 71 33 chr9 98160011 98160270 -25915902 - MLT2B2 LTR ERVL -149 366 102 2 1333 389 264 11 0 chr9 98160272 98160359 -25915813 + PB1D10 SINE Alu 4 91 -26 2 1333 339 219 24 0 chr9 98160375 98160457 -25915715 - MLT2B2 LTR ERVL -439 115 32 2 1333 4106 34 11 2 chr9 98161101 98161579 -25914593 + LTRIS_Mm LTR ERV1 1 482 0 2 1333 197 250 84 65 chr9 98162037 98162144 -25914028 - L2b LINE L2 -10 3365 3257 2 1333 209 186 94 0 chr9 98162723 98162790 -25913382 + MIRc SINE MIR 108 188 -80 2 1333 728 114 7 0 chr9 98164539 98164679 -25911493 + (TC)n Simple_repeat Simple_repeat 2 142 0 2 1333 537 144 0 0 chr9 98164722 98164812 -25911360 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 1333 1512 286 65 12 chr9 98165081 98165753 -25910419 - L1MB7 LINE L1 -125 6053 5303 2 1333 473 237 66 7 chr9 98165994 98166130 -25910042 - RMER15 LTR ERVL 0 575 432 2 1333 1126 68 0 7 chr9 98166315 98166464 -25909708 + B1_Mus1 SINE Alu 1 148 0 2 1333 2734 165 11 60 chr9 98166664 98167097 -25909075 + RLTR28 LTR ERVL 1 406 -118 2 1333 2037 166 89 18 chr9 98167097 98167490 -25908682 - MTC LTR MaLR 0 421 1 2 1333 2734 165 11 60 chr9 98167490 98167592 -25908580 + RLTR28 LTR ERVL 407 510 -14 2 1333 339 284 147 13 chr9 98167612 98167769 -25908403 + RLTR28 LTR ERVL 118 295 -229 2 1333 1473 142 4 0 chr9 98167777 98168003 -25908169 - Lx4A LINE L1 -672 6386 6160 2 1333 3867 118 55 2 chr9 98168012 98168589 -25907583 + Lx4A LINE L1 6451 7058 0 2 1333 262 225 55 27 chr9 98168681 98168754 -25907418 + RLTR28 LTR ERVL 436 510 -14 2 1333 185 330 90 30 chr9 98169187 98169287 -25906885 - L2b LINE L2 -183 3192 3087 2 1333 254 282 126 0 chr9 98169829 98169932 -25906240 + Arthur1A DNA Tip100 33 148 -29 2 1333 2276 159 59 5 chr9 98169951 98170325 -25905847 - ORR1B1 LTR MaLR 0 394 1 2 1333 261 220 0 0 chr9 98170327 98170386 -25905786 - Lx9 LINE L1 -170 7474 7416 2 1333 278 312 115 21 chr9 98170567 98170708 -25905464 - HAL1 LINE L1 -128 2379 2217 2 1333 306 0 0 0 chr9 98170708 98170742 -25905430 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1333 278 312 115 21 chr9 98170742 98170940 -25905232 - HAL1 LINE L1 -291 2216 2009 2 1333 378 74 0 0 chr9 98170958 98171012 -25905160 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 2 1333 307 329 121 12 chr9 98171336 98171502 -25904670 - HAL1 LINE L1 -904 1603 1420 2 1333 387 299 86 35 chr9 98172489 98172687 -25903485 - MamRep564 Unknown Unknown -126 231 24 2 1334 378 303 161 0 chr9 98173327 98173482 -25902690 + MLT1J2 LTR MaLR 259 438 -10 2 1334 805 240 78 63 chr9 98173848 98173977 -25902195 - RLTR15 LTR ERVK -21 338 201 2 1334 3135 59 33 13 chr9 98173977 98174374 -25901798 - MTB_Mm LTR MaLR 0 407 3 2 1334 805 240 78 63 chr9 98174374 98174577 -25901595 - RLTR15 LTR ERVK -159 200 1 2 1334 183 274 116 23 chr9 98174933 98175019 -25901153 - MIR3 SINE MIR -52 156 63 2 1334 189 263 64 26 chr9 98176828 98176906 -25899266 + L3 LINE CR1 1668 1748 -2741 2 1334 249 307 13 153 chr9 98177059 98177085 -25899087 + ID_B1 SINE B4 62 154 -70 2 1334 372 243 9 112 chr9 98177085 98177201 -25898971 + B1F1 SINE Alu 1 104 -45 2 1334 216 175 0 0 chr9 98177254 98177294 -25898878 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 2 1334 561 30 0 0 chr9 98177295 98177362 -25898810 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2 1334 353 313 138 10 chr9 98177368 98177571 -25898601 - MIR SINE MIR -13 249 21 2 1334 180 371 55 22 chr9 98177660 98177751 -25898421 - MIRm SINE MIR -19 257 164 2 1334 181 345 59 50 chr9 98178934 98179053 -25897119 + L3 LINE CR1 1652 1771 -2718 2 1334 731 267 108 158 chr9 98179541 98179733 -25896439 - MTEb LTR MaLR -37 342 179 2 1334 798 274 52 35 chr9 98179733 98180020 -25896152 - B4A SINE B4 0 292 1 2 1334 731 267 108 158 chr9 98180020 98180187 -25895985 - MTEb LTR MaLR -201 178 1 2 1334 491 299 0 8 chr9 98181252 98181370 -25894802 + RSINE1 SINE B4 3 119 -46 2 1334 378 0 0 0 chr9 98181371 98181413 -25894759 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1334 241 331 118 6 chr9 98181413 98181583 -25894589 - MIRb SINE MIR -36 232 44 2 1334 211 239 76 124 chr9 98181690 98181795 -25894377 + MIR SINE MIR 19 118 -90 2 1334 423 108 36 12 chr9 98182482 98182566 -25893606 + GA-rich Low_complexity Low_complexity 3 88 0 2 1334 1379 251 114 14 chr9 98183548 98183793 -25892379 - MTD LTR MaLR -14 405 136 2 1334 3849 51 0 33 chr9 98183793 98184279 -25891893 + L1_Mus1 LINE L1 6096 6565 -2 2 1334 1379 251 114 14 chr9 98184279 98184401 -25891771 - MTD LTR MaLR -284 135 1 2 1334 287 322 115 105 chr9 98184483 98184788 -25891384 - LTR85c LTR Gypsy? -506 317 10 2 1334 268 289 66 7 chr9 98184789 98184925 -25891247 + L1ME4a LINE L1 5979 6122 -2 2 1334 343 263 150 21 chr9 98184929 98185069 -25891103 - MIRb SINE MIR -43 225 68 2 1334 216 0 0 0 chr9 98185511 98185535 -25890637 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1334 267 318 126 8 chr9 98185696 98185823 -25890349 + RMER20B LTR ERVK 466 607 -20 2 1334 3288 43 5 5 chr9 98187023 98187419 -25888753 + MTA_Mm LTR MaLR 1 396 0 2 1334 1995 78 0 50 chr9 98187525 98187824 -25888348 - RLTR10B LTR ERVK 0 292 9 2 1334 319 71 0 0 chr9 98187832 98187874 -25888298 - RLTR10B LTR ERVK -250 42 1 2 1334 249 353 89 40 chr9 98187916 98188040 -25888132 + LTR16B1 LTR ERVL 113 242 -238 2 1334 302 326 42 79 chr9 98188639 98188829 -25887343 + RMER4A LTR ERVK 5 187 -279 2 1334 434 284 56 60 chr9 98189816 98190082 -25886090 - RLTR42-int LTR ERVK -4121 1401 1137 2 1334 504 287 80 7 chr9 98190608 98190745 -25885427 + B3A SINE B2 13 159 -39 2 1334 848 285 129 72 chr9 98190823 98191310 -25884862 + MLT2B2 LTR ERVL 1 515 0 2 1334 182 176 29 0 chr9 98191729 98191763 -25884409 - L2 LINE L2 -2121 1298 1264 2 1334 188 259 0 33 chr9 98191808 98191868 -25884304 + L2 LINE L2 437 494 -2925 2 1334 231 326 52 3 chr9 98193462 98193582 -25882590 - L2a LINE L2 -3 3423 3241 2 1334 665 269 90 82 chr9 98193781 98194137 -25882035 - ORR1E LTR MaLR 0 359 1 2 1334 189 275 97 44 chr9 98194231 98194345 -25881827 - L2a LINE L2 -511 2908 2789 2 1334 227 267 65 32 chr9 98195749 98195842 -25880330 - MIRb SINE MIR -81 187 92 2 1334 298 241 148 101 chr9 98196274 98196463 -25879709 + Arthur1C DNA Tip100 164 361 -2 2 1334 240 216 195 18 chr9 98196474 98196587 -25879585 + HAL1 LINE L1 2192 2324 -183 2 1334 321 89 0 0 chr9 98196589 98196634 -25879538 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1334 1082 233 123 63 chr9 98197764 98198130 -25878042 + MTD LTR MaLR 1 388 -31 2 1334 1029 138 152 10 chr9 98198561 98198759 -25877413 - URR1A DNA MER1_type 0 226 1 2 1334 511 183 84 28 chr9 98198973 98199187 -25876985 - Lx9 LINE L1 0 7644 7419 2 1334 240 98 70 47 chr9 98199155 98199241 -25876931 + Lx9 LINE L1 7463 7550 -94 2 1334 621 100 0 0 chr9 98200292 98200382 -25875790 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 1334 915 121 137 0 chr9 98200792 98200982 -25875190 - Lx9 LINE L1 0 7644 7429 2 1334 225 229 186 0 chr9 98201305 98201375 -25874797 - ID4_ SINE ID 0 83 1 2 1334 385 248 17 42 chr9 98204775 98204893 -25871279 - MTEa LTR MaLR -2 377 263 2 1334 319 345 26 66 chr9 98204976 98205128 -25871044 - MTEa LTR MaLR -165 194 49 2 1334 1587 325 147 46 chr9 98205118 98206005 -25870167 - MTE-int LTR MaLR -283 1297 322 2 1334 1084 229 0 0 chr9 98206046 98206238 -25869934 - B3 SINE B2 -24 192 1 2 1334 955 266 116 7 chr9 98206246 98206522 -25869650 - MTE-int LTR MaLR -1231 349 44 2 1334 668 330 49 23 chr9 98206574 98206910 -25869262 - ORR1E LTR MaLR 0 379 14 2 1334 589 290 0 7 chr9 98207002 98207141 -25869031 - B1F1 SINE Alu -11 138 1 2 1334 214 250 0 0 chr9 98207420 98207472 -25868700 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1334 244 366 119 66 chr9 98207677 98207920 -25868252 - LTR16C LTR ERVL -59 430 175 2 1334 374 362 16 0 chr9 98207932 98208059 -25868113 - LTR16C LTR ERVL -360 129 1 2 1334 555 128 293 7 chr9 98209226 98209289 -25866883 + Lx9 LINE L1 7412 7476 -168 2 1334 267 31 0 0 chr9 98209289 98209321 -25866851 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1334 555 128 293 7 chr9 98209321 98209407 -25866765 + Lx9 LINE L1 7477 7604 -40 2 1334 713 174 0 10 chr9 98209411 98209716 -25866456 + (TG)n Simple_repeat Simple_repeat 1 301 0 2 1334 530 206 3 14 chr9 98209730 98210019 -25866153 + (TG)n Simple_repeat Simple_repeat 1 285 0 2 1334 322 333 0 12 chr9 98210279 98210364 -25865808 + B3A SINE B2 71 154 -44 2 1334 351 65 0 0 chr9 98210364 98210410 -25865762 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1334 261 0 0 0 chr9 98210410 98210438 -25865734 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1334 412 274 14 101 chr9 98210579 98210798 -25865374 - L1MC4a LINE L1 -1991 5891 5692 2 1334 1050 261 103 23 chr9 98210904 98211253 -25864919 - MTEb LTR MaLR -2 377 1 2 1334 1476 213 150 11 chr9 98211387 98211753 -25864419 + MTD LTR MaLR 3 419 0 2 1334 337 286 116 36 chr9 98215434 98215572 -25860600 - MER5A DNA MER1_type -24 165 17 2 1334 181 319 116 34 chr9 98215584 98215730 -25860442 - MER5B DNA MER1_type -20 158 1 2 1334 301 297 146 26 chr9 98216108 98216416 -25859756 + L1ME2z LINE L1 5770 6114 -330 2 1334 200 182 0 0 chr9 98218756 98218789 -25857383 + CT-rich Low_complexity Low_complexity 2 34 0 2 1334 1031 69 14 20 chr9 98218789 98218937 -25857235 - B1_Mm SINE Alu 0 147 1 2 1334 241 336 109 47 chr9 98219661 98219936 -25856236 + L2c LINE L2 3091 3382 -5 2 1334 1890 210 71 3 chr9 98220634 98221026 -25855146 - MTD LTR MaLR 0 419 1 2 1334 517 314 88 16 chr9 98221481 98221675 -25854497 + Tigger13a DNA MER2_type 139 346 -425 2 1334 267 191 0 0 chr9 98222264 98222311 -25853861 + MTC LTR MaLR 375 421 0 2 1334 4455 146 157 113 chr9 98222310 98223512 -25852660 + MTC-int LTR MaLR 2 1256 -2 2 1334 2375 153 53 10 chr9 98223514 98223910 -25852262 + MTC LTR MaLR 1 413 -8 2 1334 199 219 0 0 chr9 98224093 98224134 -25852038 - L2b LINE L2 -2 3373 3333 2 1334 226 376 12 0 chr9 98225341 98225426 -25850746 + MIRb SINE MIR 91 176 -92 3 1334 619 291 78 96 chr9 98227841 98228134 -25848038 + B4A SINE B4 1 288 -4 3 1334 844 232 69 30 chr9 98228306 98228537 -25847635 + RMER15 LTR ERVL 336 575 0 3 1334 216 0 0 0 chr9 98228578 98228602 -25847570 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1334 732 304 150 30 chr9 98228679 98228878 -25847294 - MLT1D LTR MaLR -1 504 296 3 1334 743 299 72 68 chr9 98228878 98229408 -25846764 - MT2A LTR ERVL -1 532 1 3 1334 732 304 150 30 chr9 98229408 98229648 -25846524 - MLT1D LTR MaLR -210 295 12 3 1334 441 196 5 87 chr9 98231390 98231586 -25844586 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1334 199 151 27 73 chr9 98231594 98231744 -25844428 + (TATATG)n Simple_repeat Simple_repeat 6 148 0 3 1334 279 215 0 76 chr9 98231752 98231883 -25844289 + (TG)n Simple_repeat Simple_repeat 1 121 0 3 1334 521 304 66 55 chr9 98231902 98232174 -25843998 - B4 SINE B4 -17 275 1 3 1334 1232 307 79 42 chr9 98232742 98232970 -25843202 - LTR40a LTR ERVL -2 517 262 3 1334 2784 131 17 2 chr9 98232970 98233383 -25842789 + MTC LTR MaLR 3 421 0 3 1334 1232 307 79 42 chr9 98233383 98233650 -25842522 - LTR40a LTR ERVL -258 261 4 3 1334 1302 241 114 8 chr9 98233717 98234068 -25842104 - MTD LTR MaLR -14 405 18 3 1334 229 287 112 60 chr9 98234090 98234270 -25841902 - L2c LINE L2 -20 3367 3157 3 1334 436 229 0 107 chr9 98234494 98234513 -25841659 + MT2B LTR ERVL 149 154 -447 3 1334 855 91 0 0 chr9 98234513 98234623 -25841549 + B1_Mus1 SINE Alu 1 110 -38 3 1334 624 27 0 0 chr9 98234623 98234697 -25841475 + (GGAGA)n Simple_repeat Simple_repeat 5 78 0 3 1334 551 259 205 0 chr9 98236184 98236369 -25839803 + B4 SINE B4 1 223 -69 3 1334 1370 210 82 16 chr9 98236400 98236705 -25839467 + ORR1D1 LTR MaLR 1 325 -49 3 1334 300 299 0 0 chr9 98236713 98236790 -25839382 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1334 2664 199 149 38 chr9 98237193 98237912 -25838260 + RMER17B LTR ERVK 1 939 -19 3 1334 472 250 10 0 chr9 98239319 98239415 -25836757 - PB1D10 SINE Alu -18 99 3 3 1334 369 182 0 0 chr9 98239759 98239814 -25836358 + ID2 SINE ID 12 66 -17 3 1334 360 0 0 0 chr9 98239837 98239877 -25836295 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1334 765 173 8 0 chr9 98239885 98240012 -25836160 - B1_Mur2 SINE Alu -20 129 2 3 1334 712 115 0 28 chr9 98242528 98242635 -25833537 - B1_Mur3 SINE Alu -13 136 33 3 1334 251 333 75 40 chr9 98242833 98243111 -25833061 + MER52-int LTR ERV1 3955 4242 -2849 3 1334 2895 44 9 117 chr9 98243244 98243679 -25832493 + RLTR10 LTR ERVK 1 388 -2 3 1334 16492 20 15 1 chr9 98243722 98245668 -25830504 + RLTR10-int LTR ERVK 11 1984 -3 3 1334 2924 42 9 117 chr9 98245670 98246105 -25830067 + RLTR10 LTR ERVK 1 388 -2 3 1334 1819 159 109 11 chr9 98246275 98246624 -25829548 + ORR1C2 LTR MaLR 1 383 -1 3 1334 674 120 5 16 chr9 98248363 98248494 -25827678 + B1_Mus1 SINE Alu 12 138 -11 3 1334 2040 139 10 95 chr9 98248500 98248890 -25827282 + ORR1B2 LTR MaLR 3 359 -8 3 1334 358 295 53 0 chr9 98248906 98249001 -25827171 - MLT1D LTR MaLR -399 106 7 3 1334 245 312 0 94 chr9 98249050 98249156 -25827016 + L2b LINE L2 3262 3365 -22 3 1334 1854 156 43 15 chr9 98251273 98251664 -25824508 - RMER17C LTR ERVK -8 402 1 3 1334 322 258 6 215 chr9 98252301 98252437 -25823735 - MLT1F2 LTR MaLR -29 531 429 3 1334 1473 135 5 5 chr9 98252437 98252660 -25823512 - MTC LTR MaLR 0 421 199 3 1334 1131 256 85 6 chr9 98253274 98253593 -25822579 - MLT1F2 LTR MaLR -216 344 1 3 1334 311 265 32 77 chr9 98253602 98253742 -25822430 - MIRb SINE MIR -50 158 16 3 1334 358 263 39 78 chr9 98253990 98254118 -25822054 + L1MC4 LINE L1 7905 8027 -15 3 1334 407 243 17 120 chr9 98254118 98254154 -25822018 + MT2B LTR ERVL 133 156 -445 3 1334 627 103 0 56 chr9 98254154 98254267 -25821905 + B1_Mus1 SINE Alu 1 101 -16 3 1334 225 0 0 0 chr9 98254399 98254424 -25821748 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1334 27 0 0 0 chr9 98255138 98255165 -25821007 + AT_rich Low_complexity Low_complexity 1 27 0 3 1334 192 295 32 16 chr9 98255664 98255726 -25820446 - L4 LINE RTE -1320 709 647 3 1334 401 285 87 63 chr9 98255744 98255950 -25820222 + L1MEc LINE L1 862 1072 -5328 3 1334 539 300 185 13 chr9 98256068 98256598 -25819574 + L1MEc LINE L1 1153 1773 -4627 3 1334 387 0 0 0 chr9 98256939 98256982 -25819190 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1334 857 327 17 51 chr9 98256988 98257186 -25818986 - B4 SINE B4 -8 284 97 3 1334 1847 147 180 0 chr9 98257186 98257519 -25818653 + ORR1B1 LTR MaLR 2 394 0 3 1334 857 327 17 51 chr9 98257519 98257613 -25818559 - B4 SINE B4 -196 96 2 3 1334 266 234 185 0 chr9 98257622 98257777 -25818395 + L1MEc LINE L1 2140 2331 -4069 3 1334 916 295 81 16 chr9 98257835 98258142 -25818030 - MER44A DNA MER2_type -9 330 4 3 1334 328 326 35 0 chr9 98258147 98258319 -25817853 + L1MEc LINE L1 2407 2584 -3735 3 1334 1130 171 39 4 chr9 98258333 98258562 -25817610 + Lx7 LINE L1 6861 7097 -599 3 1334 243 253 45 67 chr9 98258562 98258651 -25817521 + Tigger10 DNA Tigger 353 439 -1404 3 1334 640 281 0 6 chr9 98258651 98258819 -25817353 + Lx7 LINE L1 7197 7363 -333 3 1334 2235 137 25 16 chr9 98258859 98259222 -25816950 + ORR1B2 LTR MaLR 1 366 -1 3 1334 951 316 92 17 chr9 98259433 98260128 -25816044 + L1MEc LINE L1 4799 5570 -749 3 1334 492 86 0 0 chr9 98260553 98260623 -25815549 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1334 290 313 48 0 chr9 98260641 98260724 -25815448 + B4A SINE B4 10 96 -196 3 1334 198 0 0 0 chr9 98260724 98260746 -25815426 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1334 342 0 0 0 chr9 98260746 98260783 -25815389 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1334 871 284 55 22 chr9 98260855 98261129 -25815043 + B4A SINE B4 2 284 -8 3 1334 234 0 0 0 chr9 98261163 98261189 -25814983 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1334 344 249 94 16 chr9 98261272 98261464 -25814708 + L1MC5 LINE L1 7452 7658 -303 3 1334 202 266 39 110 chr9 98261638 98261765 -25814407 - L4 LINE RTE -1501 528 411 3 1334 423 0 0 0 chr9 98262540 98262587 -25813585 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1334 290 346 85 53 chr9 98263638 98263827 -25812345 - MIRb SINE MIR -5 257 63 3 1334 1213 41 7 0 chr9 98264157 98264302 -25811870 + B1_Mus1 SINE Alu 2 147 -1 3 1334 445 293 89 8 chr9 98264526 98264650 -25811522 + ORR1E LTR MaLR 1 134 -225 3 1334 356 218 162 26 chr9 98265813 98265959 -25810213 - MIRc SINE MIR -100 168 8 3 1334 224 330 50 50 chr9 98266359 98266480 -25809692 + MIRb SINE MIR 77 197 -71 3 1334 1698 293 84 43 chr9 98267793 98268870 -25807302 + L1MD2 LINE L1 5228 6348 -11 3 1334 849 292 111 21 chr9 98269498 98269974 -25806198 + L1MC4a LINE L1 6080 6598 -1284 3 1334 201 240 0 0 chr9 98269979 98270029 -25806143 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1334 432 0 0 0 chr9 98270235 98270283 -25805889 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1334 308 250 50 40 chr9 98270366 98270466 -25805706 + L1MC4a LINE L1 6704 6804 -1078 3 1334 276 277 56 2 chr9 98270482 98270580 -25805592 + PB1D10 SINE Alu 18 120 -7 3 1334 245 300 37 12 chr9 98270581 98270662 -25805510 + ID4 SINE ID 1 83 0 3 1334 1292 316 57 21 chr9 98270672 98271390 -25804782 + L1MC4a LINE L1 6822 7565 -317 3 1334 1243 48 0 0 chr9 98271540 98271687 -25804485 + B1_Mus2 SINE Alu 1 147 0 3 1334 263 197 0 62 chr9 98271699 98271764 -25804408 + L1MD3 LINE L1 7890 7950 -45 3 1334 332 250 36 29 chr9 98271987 98272127 -25804045 + CT-rich Low_complexity Low_complexity 5 145 0 3 1334 653 256 0 0 chr9 98273360 98273497 -25802675 + B4 SINE B4 2 138 -154 3 1334 398 236 64 0 chr9 98273511 98273621 -25802551 + RCHARR1 DNA MER1_type 381 497 -477 3 1334 568 255 64 19 chr9 98273621 98273777 -25802395 + RSINE1 SINE B4 3 165 0 3 1334 236 131 109 47 chr9 98273797 98273861 -25802311 + RCHARR1 DNA MER1_type 467 534 -440 3 1334 1007 148 126 0 chr9 98273865 98274048 -25802124 + B3 SINE B2 6 211 -5 3 1334 1203 78 0 0 chr9 98274051 98274204 -25801968 + B2_Mm2 SINE B2 2 154 -41 3 1334 387 0 0 0 chr9 98274205 98274248 -25801924 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1334 1766 195 49 34 chr9 98274252 98274698 -25801474 + RCHARR1 DNA MER1_type 521 973 -1 3 1334 508 316 73 86 chr9 98275107 98275339 -25800833 + B4A SINE B4 3 231 -61 3 1334 405 224 178 0 chr9 98277546 98277653 -25798519 + ID_B1 SINE B4 94 219 -5 3 1334 1791 31 43 34 chr9 98278421 98278656 -25797516 - L1_Mus1 LINE L1 0 6567 6331 3 1334 1163 51 0 0 chr9 98278656 98278794 -25797378 + L1_Mus1 LINE L1 5619 5756 -811 3 1334 1105 108 0 11 chr9 98279061 98279239 -25796933 + (TA)n Simple_repeat Simple_repeat 1 176 0 3 1334 678 227 6 25 chr9 98279247 98279405 -25796767 + RSINE1 SINE B4 11 165 0 3 1334 27 0 0 0 chr9 98280101 98280128 -25796044 + AT_rich Low_complexity Low_complexity 1 27 0 3 1334 621 144 0 0 chr9 98280875 98280972 -25795200 - MTC LTR MaLR -324 97 1 3 1334 422 248 142 28 chr9 98280972 98281113 -25795059 - MLT1G3 LTR MaLR -17 578 422 3 1334 471 206 40 30 chr9 98281562 98281662 -25794510 - PB1D10 SINE Alu 0 117 17 3 1334 403 328 56 78 chr9 98282004 98282288 -25793884 + L1M5 LINE L1 3714 3991 -2155 3 1334 645 49 0 0 chr9 98282399 98282480 -25793692 + (GGGA)n Simple_repeat Simple_repeat 2 82 0 3 1334 1171 250 29 8 chr9 98282990 98283232 -25792940 + B4A SINE B4 40 286 -6 3 1334 360 0 0 0 chr9 98283831 98283871 -25792301 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1334 432 91 0 0 chr9 98284199 98284265 -25791907 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1334 296 180 16 47 chr9 98284273 98284337 -25791835 - ID4_ SINE ID -20 63 2 3 1334 212 31 62 0 chr9 98284343 98284375 -25791797 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 1334 321 227 124 11 chr9 98284375 98284464 -25791708 - PB1 SINE Alu -11 116 18 3 1334 21 0 0 0 chr9 98284620 98284641 -25791531 + AT_rich Low_complexity Low_complexity 1 21 0 3 1334 432 0 0 0 chr9 98285076 98285124 -25791048 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1334 297 312 55 28 chr9 98285284 98285465 -25790707 - HAL1 LINE L1 -678 1829 1644 4 1334 363 319 111 50 chr9 98285495 98285693 -25790479 + MER58C DNA MER1_type 2 211 -4 4 1334 546 313 113 72 chr9 98285703 98286136 -25790036 - HAL1 LINE L1 -893 1614 1164 4 1334 549 285 32 26 chr9 98286811 98286966 -25789206 - RSINE1 SINE B4 0 165 10 4 1334 1653 228 85 8 chr9 98289282 98289671 -25786501 - MTD LTR MaLR 0 419 1 4 1334 234 0 0 0 chr9 98290360 98290386 -25785786 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 4 1334 541 158 40 12 chr9 98290386 98290559 -25785613 + CT-rich Low_complexity Low_complexity 3 180 0 4 1334 385 304 108 63 chr9 98291141 98291417 -25784755 + L1MD LINE L1 2305 2607 -3539 4 1334 250 298 53 0 chr9 98291474 98291568 -25784604 + L1MD LINE L1 2684 2782 -3364 4 1334 286 235 64 48 chr9 98291657 98291782 -25784390 + L1MD LINE L1 2923 3049 -3097 4 1334 551 273 267 66 chr9 98291870 98292186 -25783986 + ORR1E LTR MaLR 1 379 0 4 1334 322 250 42 48 chr9 98292195 98292386 -25783786 + ORR1E-int LTR MaLR 5 228 -1352 4 1334 429 220 99 10 chr9 98292842 98292943 -25783229 + Lx9 LINE L1 7102 7211 -433 4 1334 850 109 147 20 chr9 98293013 98293163 -25783009 + RMER6D LTR ERVK 4 172 -548 4 1334 1134 217 36 48 chr9 98293227 98293549 -25782623 + Lx5 LINE L1 6760 7050 0 4 1334 2250 270 185 41 chr9 98293576 98294698 -25781474 + ORR1E-int LTR MaLR 218 1527 -53 4 1334 545 315 70 114 chr9 98294698 98295067 -25781105 + ORR1E LTR MaLR 2 354 -5 4 1334 353 261 91 35 chr9 98295079 98295309 -25780863 + L1MD LINE L1 4295 4537 -1609 4 1334 339 257 164 43 chr9 98295450 98295775 -25780397 + L1MEe LINE L1 1179 1567 -4599 4 1334 2287 110 6 6 chr9 98295842 98296171 -25780001 + ORR1A4 LTR MaLR 1 329 0 4 1334 339 305 123 55 chr9 98296184 98296347 -25779825 + L1MEe LINE L1 1685 1858 -4308 4 1334 520 268 150 70 chr9 98296449 98296712 -25779460 + L1MEe LINE L1 2037 2307 -3859 4 1334 696 144 12 121 chr9 98296712 98296878 -25779294 + B1_Mur2 SINE Alu 2 149 0 4 1334 520 268 150 70 chr9 98296878 98296955 -25779217 + L1MEe LINE L1 2308 2404 -3762 4 1334 571 178 63 38 chr9 98296985 98297143 -25779029 + Lx4B LINE L1 6896 7057 -1 4 1334 698 322 70 51 chr9 98297158 98297893 -25778279 + L1MEe LINE L1 2475 3238 -2908 4 1334 364 296 25 25 chr9 98297957 98298120 -25778052 + L1MEe LINE L1 3359 3521 -2625 4 1334 239 246 43 0 chr9 98298188 98298257 -25777915 + GA-rich Low_complexity Low_complexity 2 73 0 4 1334 315 269 26 96 chr9 98298412 98298527 -25777645 + MT2B LTR ERVL 154 260 -341 4 1334 674 208 8 0 chr9 98298427 98298547 -25777625 + B1_Mur1 SINE Alu 7 127 -22 4 1334 267 264 0 0 chr9 98298542 98298595 -25777577 + PB1D9 SINE Alu 65 117 -3 4 1334 1065 138 75 51 chr9 98298595 98298809 -25777363 + MTD LTR MaLR 193 411 -8 4 1334 1686 207 81 23 chr9 98299114 98299510 -25776662 - MTD LTR MaLR 0 419 1 4 1334 364 225 60 31 chr9 98300236 98300344 -25775828 + MIRc SINE MIR 48 155 -113 4 1334 486 0 0 0 chr9 98300359 98300413 -25775759 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1334 244 347 16 39 chr9 98301139 98301268 -25774904 + MIRb SINE MIR 85 210 -58 4 1334 182 262 208 24 chr9 98301688 98301813 -25774359 + MER5B DNA MER1_type 1 148 -30 4 1334 297 329 98 31 chr9 98302304 98302467 -25773705 - ORR1E LTR MaLR -151 208 35 4 1334 227 290 52 76 chr9 98302634 98302781 -25773391 - MIR SINE MIR -46 222 64 4 1334 275 200 73 0 chr9 98303794 98303849 -25772323 + L2a LINE L2 3361 3419 -7 4 1335 286 313 24 0 chr9 98304745 98304828 -25771344 + MER103 DNA DNA 34 118 -48 4 1335 575 205 0 33 chr9 98305047 98305168 -25771004 - PB1D9 SINE Alu 0 120 4 4 1335 765 190 126 6 chr9 98305329 98305488 -25770684 + B3 SINE B2 1 178 -38 4 1335 261 0 0 0 chr9 98305494 98305523 -25770649 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1335 297 0 0 0 chr9 98305523 98305556 -25770616 + (TAAAA)n Simple_repeat Simple_repeat 1 33 0 4 1335 1680 303 62 14 chr9 98305563 98306156 -25770016 - Lx8 LINE L1 -152 7321 6700 4 1335 474 18 0 0 chr9 98306181 98306236 -25769936 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1335 474 244 44 7 chr9 98306253 98306389 -25769783 - B1F SINE Alu -8 141 1 4 1335 328 282 145 0 chr9 98307392 98307509 -25768663 - MIRb SINE MIR -109 159 26 4 1335 1075 191 28 9 chr9 98307717 98307928 -25768244 - B3 SINE B2 0 216 2 4 1335 472 320 51 23 chr9 98308305 98308561 -25767611 + B4A SINE B4 7 269 -23 4 1335 207 0 0 0 chr9 98308561 98308584 -25767588 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1335 200 111 28 0 chr9 98311338 98311374 -25764798 + (CCTG)n Simple_repeat Simple_repeat 1 37 0 4 1335 734 237 15 50 chr9 98311443 98311643 -25764529 - B3A SINE B2 -5 193 1 4 1335 1097 261 104 43 chr9 98312013 98312389 -25763783 + MTD LTR MaLR 19 417 -2 4 1335 1002 80 0 0 chr9 98312950 98313087 -25763085 + (GAAA)n Simple_repeat Simple_repeat 2 138 0 4 1335 406 219 77 116 chr9 98313161 98313316 -25762856 - B1F SINE Alu 0 149 1 4 1335 309 310 55 15 chr9 98314260 98314393 -25761779 - L2c LINE L2 0 3387 3270 4 1335 1494 27 0 0 chr9 98314562 98314784 -25761388 + (TTC)n Simple_repeat Simple_repeat 1 222 0 4 1335 216 333 0 0 chr9 98315200 98315281 -25760891 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1335 675 281 82 141 chr9 98316164 98316590 -25759582 - MTD LTR MaLR -1 418 18 4 1335 289 268 35 18 chr9 98316796 98316910 -25759262 + L1M4 LINE L1 5216 5331 -815 4 1335 298 252 37 37 chr9 98317364 98317501 -25758671 + L1M4 LINE L1 5341 5477 -707 4 1335 301 224 175 8 chr9 98317500 98317626 -25758546 + L1M4 LINE L1 5621 5767 -411 4 1335 559 279 39 0 chr9 98317837 98317991 -25758181 - RSINE1 SINE B4 -3 162 3 4 1335 308 249 55 50 chr9 98317998 98318197 -25757975 - L1M3f LINE L1 -4153 1175 976 4 1335 181 292 156 16 chr9 98319734 98319856 -25756316 + L2b LINE L2 3233 3371 -4 4 1335 306 0 0 0 chr9 98320078 98320112 -25756060 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1335 222 295 88 25 chr9 98320354 98320434 -25755738 - MIRb SINE MIR -144 124 40 4 1335 248 276 37 84 chr9 98321079 98321186 -25754986 + MIR SINE MIR 6 107 -155 4 1335 332 128 0 49 chr9 98321524 98321606 -25754566 + CT-rich Low_complexity Low_complexity 1 78 0 4 1335 365 337 0 0 chr9 98321608 98321703 -25754469 - B1F SINE Alu -50 99 5 4 1335 197 263 0 0 chr9 98322148 98322186 -25753986 + L2b LINE L2 3124 3161 -214 4 1335 364 200 139 12 chr9 98322647 98322733 -25753439 - Lx8 LINE L1 -444 7029 6933 4 1335 442 170 188 27 chr9 98322733 98322868 -25753304 + ORR1D1 LTR MaLR 214 415 -6 4 1335 1239 113 0 151 chr9 98322868 98323119 -25753053 - URR1B DNA MER1_type 0 225 13 4 1335 399 21 0 0 chr9 98323880 98323928 -25752244 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1335 183 114 0 0 chr9 98324394 98324429 -25751743 + (CCCCCA)n Simple_repeat Simple_repeat 4 38 0 4 1335 231 42 20 78 chr9 98325128 98325179 -25750993 + (CCCCG)n Simple_repeat Simple_repeat 1 48 0 4 1335 998 131 97 127 chr9 98327318 98327546 -25748626 + URR1A DNA MER1_type 1 221 -5 4 1335 181 375 25 51 chr9 98328736 98328854 -25747318 - L2b LINE L2 -188 3187 3073 4 1335 323 224 17 0 chr9 98329435 98329493 -25746679 + MER102b DNA MER1_type 15 73 -268 4 1335 245 250 19 0 chr9 98330683 98330735 -25745437 + polypurine Low_complexity Low_complexity 4 56 0 4 1335 279 0 0 0 chr9 98330979 98331010 -25745162 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1335 217 288 40 40 chr9 98331474 98331550 -25744622 - MIRb SINE MIR -76 192 117 4 1335 280 278 22 22 chr9 98331693 98331785 -25744387 + MIRc SINE MIR 122 213 -55 4 1335 531 0 0 0 chr9 98332111 98332170 -25744002 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1335 195 261 236 11 chr9 98332439 98332528 -25743644 - MER5A DNA MER1_type -67 122 14 4 1335 350 255 39 58 chr9 98332874 98332978 -25743194 - MLT1G1 LTR MaLR -297 282 181 4 1335 316 247 25 25 chr9 98332982 98333061 -25743111 - ORR1E LTR MaLR -1 358 280 4 1335 276 235 44 56 chr9 98333242 98333332 -25742840 - ORR1E LTR MaLR -298 96 8 4 1335 444 82 0 0 chr9 98334108 98334169 -25742003 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1335 306 125 0 0 chr9 98334664 98334712 -25741460 + (A)n Simple_repeat Simple_repeat 1 48 0 4 1335 189 314 129 0 chr9 98335127 98335197 -25740975 - MIR SINE MIR 0 262 184 4 1335 367 289 213 16 chr9 98335836 98336019 -25740153 - MIR SINE MIR -11 251 33 4 1335 275 282 110 8 chr9 98336271 98336389 -25739783 + MIR SINE MIR 30 159 -103 4 1335 570 172 13 4 chr9 98337666 98337878 -25738294 + CT-rich Low_complexity Low_complexity 1 213 0 4 1335 751 128 51 0 chr9 98337878 98337995 -25738177 - B1_Mus1 SINE Alu -21 127 5 4 1335 374 235 9 73 chr9 98337915 98338025 -25738147 - MT2B LTR ERVL -361 240 138 4 1335 189 0 0 0 chr9 98340124 98340145 -25736027 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1335 384 22 0 0 chr9 98340145 98340189 -25735983 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1335 666 171 36 0 chr9 98340440 98340551 -25735621 + B1_Mus1 SINE Alu 4 118 -30 4 1335 290 297 52 39 chr9 98340639 98340716 -25735456 - PB1D7 SINE Alu -11 106 29 4 1335 246 310 124 17 chr9 98341219 98341396 -25734776 + L1ME4a LINE L1 5567 5762 -362 4 1335 487 238 92 15 chr9 98341399 98341561 -25734611 + MER45A DNA Tip100 6 171 -7 4 1335 357 319 95 30 chr9 98341634 98341802 -25734370 + L1ME4a LINE L1 5876 6054 -70 4 1335 444 323 71 39 chr9 98342307 98342598 -25733574 - B4 SINE B4 -20 272 5 4 1335 514 197 16 0 chr9 98342602 98342729 -25733443 + CT-rich Low_complexity Low_complexity 1 129 0 4 1335 483 18 0 0 chr9 98342729 98342785 -25733387 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1335 309 172 7 15 chr9 98342874 98343003 -25733169 + CT-rich Low_complexity Low_complexity 1 128 0 4 1335 320 331 123 19 chr9 98343007 98343161 -25733011 - B4 SINE B4 -67 225 56 4 1335 1615 57 0 0 chr9 98344414 98344606 -25731566 + B2_Mm1t SINE B2 2 193 0 4 1335 203 191 143 0 chr9 98345945 98346008 -25730164 + MIR3 SINE MIR 107 178 -30 4 1335 1328 84 22 0 chr9 98347374 98347552 -25728620 + B2_Mm2 SINE B2 2 183 -12 4 1335 255 130 74 0 chr9 98347595 98347649 -25728523 + B2_Mm2 SINE B2 137 194 -1 4 1335 521 297 33 28 chr9 98347861 98348076 -25728096 + B3 SINE B2 1 216 0 5 1335 255 290 0 126 chr9 98348091 98348219 -25727953 + ID4 SINE ID 1 112 -40 5 1335 931 154 4 8 chr9 98348491 98348730 -25727442 + CT-rich Low_complexity Low_complexity 1 237 0 5 1335 2607 299 81 83 chr9 98348779 98350639 -25725533 - Lx8 LINE L1 -2 7471 5618 5 1335 265 186 143 89 chr9 98350641 98350753 -25725419 + MER5B DNA MER1_type 61 178 0 5 1335 236 254 90 0 chr9 98351405 98351472 -25724700 - L2 LINE L2 -557 2862 2790 5 1335 2095 102 3 71 chr9 98351822 98352172 -25724000 - IAPLTR1a_Mm LTR ERVK -11 326 1 5 1335 59275 10 5 0 chr9 98352172 98358606 -25717566 - IAPEz-int LTR ERVK 0 6481 17 5 1335 2119 102 3 70 chr9 98358628 98358987 -25717185 - IAPLTR1a_Mm LTR ERVK -2 335 1 5 1335 228 292 70 68 chr9 98359344 98359510 -25716662 + MIR SINE MIR 28 185 -83 5 1335 444 172 0 0 chr9 98359555 98359642 -25716530 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 5 1335 327 316 89 52 chr9 98360568 98360838 -25715334 + MamRep4096 DNA hAT? 79 358 -68 5 1335 231 267 53 13 chr9 98360950 98361026 -25715146 - ID4_ SINE ID -3 80 2 5 1335 275 283 130 10 chr9 98361043 98361143 -25715029 - PB1D10 SINE Alu -5 112 1 5 1335 334 282 18 0 chr9 98361181 98361291 -25714881 - L1MA5 LINE L1 -15 6285 6174 5 1335 389 259 8 104 chr9 98361521 98361646 -25714526 + PB1D7 SINE Alu 5 117 -3 5 1335 21 0 0 0 chr9 98362722 98362743 -25713429 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 325 335 56 81 chr9 98362784 98363300 -25712872 + L1MC5 LINE L1 7181 7683 -278 5 1335 381 200 0 28 chr9 98363358 98363430 -25712742 + ID4_ SINE ID 3 72 -11 5 1335 207 186 0 0 chr9 98363586 98363629 -25712543 + (ATG)n Simple_repeat Simple_repeat 3 45 0 5 1335 648 231 74 7 chr9 98363646 98363781 -25712391 + B3A SINE B2 2 145 -53 5 1335 205 303 89 38 chr9 98363782 98363870 -25712302 - MIRc SINE MIR -86 182 88 5 1335 577 285 40 6 chr9 98364288 98364461 -25711711 + B3A SINE B2 2 180 -18 5 1335 327 354 55 14 chr9 98364543 98364689 -25711483 + MLT1F1 LTR MaLR 140 291 -278 5 1335 249 299 88 61 chr9 98364702 98364816 -25711356 + MLT1F1 LTR MaLR 420 536 -24 5 1335 1244 186 172 58 chr9 98365210 98365605 -25710567 + RMER10A LTR ERVL 3 442 0 5 1335 281 182 0 52 chr9 98365611 98365669 -25710503 + PB1D7 SINE Alu 10 64 -56 5 1335 445 289 8 23 chr9 98365715 98365846 -25710326 + RSINE1 SINE B4 7 135 -30 5 1335 3129 47 0 65 chr9 98366574 98367007 -25709165 + L1_Mus2 LINE L1 6161 6565 -1 5 1335 264 59 0 0 chr9 98367862 98367896 -25708276 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1335 1202 34 0 14 chr9 98367896 98368044 -25708128 - B1_Mm SINE Alu 0 147 2 5 1335 471 338 40 31 chr9 98368111 98368495 -25707677 + L1MD2 LINE L1 5212 5597 -645 5 1335 747 239 6 72 chr9 98368506 98368661 -25707511 + B3A SINE B2 16 164 -34 5 1335 270 0 0 0 chr9 98368661 98368691 -25707481 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1335 549 0 0 0 chr9 98368691 98368751 -25707421 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1335 747 239 6 72 chr9 98368751 98368774 -25707398 + B3A SINE B2 165 182 -16 5 1335 303 283 39 50 chr9 98368801 98368983 -25707189 + L1MD2 LINE L1 5696 5875 -484 5 1335 546 266 69 7 chr9 98369003 98369147 -25707025 + RSINE1 SINE B4 3 155 -10 5 1335 441 0 0 0 chr9 98369169 98369218 -25706954 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1335 240 288 77 52 chr9 98369457 98369651 -25706521 + L1MC4a LINE L1 7678 7876 -6 5 1335 1028 244 70 15 chr9 98369766 98370036 -25706136 + B4 SINE B4 4 288 -4 5 1335 843 75 104 0 chr9 98370233 98370367 -25705805 + B2_Mm2 SINE B2 48 195 0 5 1335 337 316 79 29 chr9 98370791 98370931 -25705241 - RSINE1 SINE B4 -11 154 8 5 1335 510 239 0 0 chr9 98371274 98371383 -25704789 - ORR1D2 LTR MaLR -259 111 3 5 1335 236 278 0 27 chr9 98372409 98372483 -25703689 + CT-rich Low_complexity Low_complexity 2 73 0 5 1335 900 299 138 12 chr9 98372611 98372750 -25703422 - RLTR20D LTR ERVK -7 498 359 5 1335 3100 56 201 2 chr9 98372750 98373177 -25702995 - RLTR1B LTR ERV1 0 512 1 5 1335 1693 176 73 0 chr9 98373177 98373508 -25702664 - RLTR20D LTR ERVK -147 358 1 5 1335 251 261 14 55 chr9 98373731 98373804 -25702368 - BC1_Mm scRNA scRNA -61 91 22 5 1335 231 221 237 21 chr9 98374038 98374135 -25702037 + Charlie1a DNA MER1_type 1317 1434 -21 5 1335 958 167 200 0 chr9 98374213 98374393 -25701779 + B3 SINE B2 1 216 0 5 1335 386 280 18 45 chr9 98375364 98375388 -25700784 + B4 SINE B4 61 81 -211 5 1335 521 257 0 35 chr9 98375388 98375501 -25700671 + PB1D9 SINE Alu 1 109 -11 5 1335 183 42 0 0 chr9 98375501 98375525 -25700647 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1335 489 221 120 15 chr9 98376538 98376671 -25699501 + B1F2 SINE Alu 2 148 -1 5 1335 283 274 42 84 chr9 98377459 98377626 -25698546 - LTR37B LTR ERV1 -8 460 301 5 1335 703 257 129 0 chr9 98377937 98378139 -25698033 + RMER15 LTR ERVL 338 565 -10 5 1335 1498 303 80 22 chr9 98378145 98378736 -25697436 + RMER15-int LTR ERVL 2 626 -4373 5 1335 2771 117 58 21 chr9 98378926 98379361 -25696811 + RMER6B LTR ERVK 1 451 -10 5 1335 1699 282 107 97 chr9 98379427 98380302 -25695870 + RMER15-int LTR ERVL 870 1753 -3246 5 1335 669 45 0 0 chr9 98380304 98380393 -25695779 + (TC)n Simple_repeat Simple_repeat 1 89 0 5 1335 188 35 35 0 chr9 98380393 98380421 -25695751 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1335 339 306 37 0 chr9 98380441 98380549 -25695623 + RMER15-int LTR ERVL 4888 4999 0 5 1335 294 345 18 0 chr9 98380830 98380943 -25695229 + RMER15 LTR ERVL 415 529 -46 5 1335 207 191 0 0 chr9 98381323 98381370 -25694802 + A-rich Low_complexity Low_complexity 1 47 0 5 1335 546 165 7 28 chr9 98381560 98381703 -25694469 + (TA)n Simple_repeat Simple_repeat 1 140 0 5 1335 343 350 72 65 chr9 98381703 98381996 -25694176 + HAL1 LINE L1 2213 2507 0 5 1335 760 122 78 0 chr9 98382063 98382178 -25693994 + B1_Mur4 SINE Alu 10 133 -17 5 1335 309 271 45 36 chr9 98382307 98382418 -25693754 + L1M5 LINE L1 5401 5512 -612 5 1335 242 317 108 104 chr9 98382716 98382994 -25693178 - ORR1E LTR MaLR -16 343 65 5 1335 396 331 76 49 chr9 98383168 98383489 -25692683 + MLT1A1 LTR MaLR 36 364 -1 5 1335 210 200 20 0 chr9 98383693 98383743 -25692429 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 5 1335 1292 270 23 36 chr9 98384327 98384711 -25691461 + MTEa LTR MaLR 1 379 0 5 1335 319 296 169 50 chr9 98385144 98385304 -25690868 + MIRb SINE MIR 43 221 -47 5 1335 268 284 30 0 chr9 98386280 98386347 -25689825 + ID4 SINE ID 5 73 -10 5 1335 327 49 0 0 chr9 98386348 98386389 -25689783 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1335 358 318 157 96 chr9 98387045 98387218 -25688954 + B4 SINE B4 2 194 -98 5 1335 858 223 66 0 chr9 98387218 98387415 -25688757 + B3 SINE B2 2 211 -5 5 1335 358 318 157 96 chr9 98387415 98387502 -25688670 + B4 SINE B4 195 278 -14 5 1335 369 0 0 0 chr9 98387506 98387547 -25688625 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1335 201 182 0 0 chr9 98387561 98387616 -25688556 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 5 1335 288 372 115 8 chr9 98387757 98387879 -25688293 + MER5A DNA MER1_type 51 185 -4 5 1335 441 0 0 0 chr9 98388639 98388688 -25687484 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1335 230 292 124 38 chr9 98388710 98388920 -25687252 - HAL1 LINE L1 -909 1598 1371 5 1335 1882 192 69 3 chr9 98388922 98389298 -25686874 - MTD LTR MaLR -14 405 5 5 1335 254 339 34 0 chr9 98389300 98389418 -25686754 - L1MEd LINE L1 -5073 1046 925 5 1335 817 188 29 0 chr9 98389513 98389651 -25686521 - B1_Mur1 SINE Alu -6 143 2 5 1335 459 0 0 0 chr9 98390430 98390481 -25685691 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1335 253 303 16 12 chr9 98392310 98392403 -25683769 + MIR SINE MIR 81 182 -86 5 1335 419 312 27 14 chr9 98392570 98392716 -25683456 + RSINE1 SINE B4 1 148 -17 5 1335 694 306 123 19 chr9 98394494 98394810 -25681362 - MLT1G3 LTR MaLR -187 408 60 5 1335 270 0 0 0 chr9 98394812 98394842 -25681330 + (ATAGG)n Simple_repeat Simple_repeat 2 31 0 5 1335 21 0 0 0 chr9 98395594 98395615 -25680557 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 282 331 56 16 chr9 98395919 98396045 -25680127 - L2a LINE L2 -9 3417 3287 5 1335 195 300 24 48 chr9 98396462 98396546 -25679626 - MIRc SINE MIR -118 150 69 5 1335 205 285 112 53 chr9 98398487 98398639 -25677533 - MIRb SINE MIR -22 246 86 5 1335 270 56 0 0 chr9 98398747 98398783 -25677389 + (CTG)n Simple_repeat Simple_repeat 1 36 0 5 1335 228 67 0 0 chr9 98398783 98398813 -25677359 + (ATG)n Simple_repeat Simple_repeat 1 30 0 5 1335 194 124 32 91 chr9 98399670 98399856 -25676316 + (TTTG)n Simple_repeat Simple_repeat 2 176 0 5 1335 890 296 58 0 chr9 98400104 98400347 -25675825 + Tigger7 DNA MER2_type 1 257 -2234 5 1335 245 320 103 0 chr9 98400354 98400432 -25675740 + Tigger7 DNA MER2_type 2406 2491 0 5 1335 327 326 103 36 chr9 98400687 98400881 -25675291 - MamGypLTR1b LTR Gypsy -57 725 519 5 1335 202 200 0 0 chr9 98401978 98402013 -25674159 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 1335 378 0 0 0 chr9 98402013 98402055 -25674117 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1335 633 300 114 8 chr9 98402674 98402936 -25673236 + B4A SINE B4 2 291 -1 5 1335 465 254 180 81 chr9 98402982 98403350 -25672822 + L1MB7 LINE L1 5745 6146 -38 5 1335 342 0 0 0 chr9 98403354 98403392 -25672780 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1335 727 293 34 22 chr9 98403695 98403873 -25672299 + B3A SINE B2 7 186 -12 5 1335 252 0 0 0 chr9 98403940 98403968 -25672204 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1335 297 0 0 0 chr9 98403968 98404000 -25672172 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1335 273 167 227 10 chr9 98404000 98404097 -25672075 + Lx9 LINE L1 7519 7636 -8 5 1335 340 255 42 11 chr9 98404428 98404523 -25671649 + B1F1 SINE Alu 1 98 -51 5 1335 590 216 11 11 chr9 98404524 98404702 -25671470 + GA-rich Low_complexity Low_complexity 3 180 0 6 1335 301 371 56 0 chr9 98404937 98405080 -25671092 - L2b LINE L2 -1 3374 3224 6 1335 343 267 49 65 chr9 98405236 98405420 -25670752 + HAL1-2a_MD LINE L1 2325 2505 -519 6 1335 336 254 42 69 chr9 98405401 98405545 -25670627 + HAL1-2a_MD LINE L1 2360 2499 -525 6 1335 816 119 15 31 chr9 98406007 98406137 -25670035 - B3 SINE B2 -87 129 2 6 1335 234 288 14 0 chr9 98406455 98406528 -25669644 - L1M5 LINE L1 -2111 5771 5698 6 1335 252 77 0 0 chr9 98406783 98406822 -25669350 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1335 565 234 9 0 chr9 98407283 98407390 -25668782 + ID_B1 SINE B4 107 214 -10 6 1335 30 0 0 0 chr9 98407451 98407481 -25668691 + AT_rich Low_complexity Low_complexity 1 30 0 6 1335 365 333 116 31 chr9 98407491 98407963 -25668209 - L1M5 LINE L1 -2265 5617 5105 6 1335 333 68 0 0 chr9 98408911 98408955 -25667217 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 6 1335 454 157 0 43 chr9 98409228 98409414 -25666758 + CT-rich Low_complexity Low_complexity 2 179 0 6 1335 268 350 64 22 chr9 98410621 98410807 -25665365 + MIR3 SINE MIR 42 249 -19 6 1335 258 105 0 0 chr9 98411113 98411151 -25665021 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1335 944 267 31 28 chr9 98412340 98412594 -25663578 + ORR1E LTR MaLR 99 353 -6 6 1335 228 267 83 28 chr9 98412660 98412768 -25663404 + MIR SINE MIR 21 134 -128 6 1335 242 56 28 0 chr9 98412875 98412911 -25663261 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1335 951 300 26 42 chr9 98413348 98413734 -25662438 + RMER15 LTR ERVL 74 575 0 6 1335 957 178 104 11 chr9 98413795 98413979 -25662193 - ORR1C2 LTR MaLR 0 384 185 6 1335 564 15 0 0 chr9 98413979 98414044 -25662128 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1335 459 318 96 88 chr9 98414044 98414235 -25661937 - ORR1C2 LTR MaLR -170 209 3 6 1335 363 307 13 79 chr9 98414248 98414400 -25661772 - LTR33A LTR ERVL -324 196 55 6 1335 3022 79 13 3 chr9 98414536 98414928 -25661244 + MTA_Mm LTR MaLR 1 396 0 6 1335 190 357 49 39 chr9 98414987 98415089 -25661083 - MIRb SINE MIR -34 234 132 6 1335 479 228 95 17 chr9 98415094 98415210 -25660962 + B1F2 SINE Alu 10 134 -15 6 1335 813 254 17 6 chr9 98415209 98415383 -25660789 + B3 SINE B2 14 189 -27 6 1335 23 0 0 0 chr9 98415811 98415834 -25660338 + AT_rich Low_complexity Low_complexity 1 23 0 6 1335 1959 182 102 11 chr9 98416315 98416697 -25659475 - MTD LTR MaLR -2 417 1 6 1335 236 325 37 12 chr9 98416719 98416800 -25659372 - MIRb SINE MIR -76 192 110 6 1335 300 315 82 63 chr9 98416864 98417023 -25659149 + MLT1A0 LTR MaLR 19 180 -185 6 1335 258 137 26 52 chr9 98417023 98417100 -25659072 + CT-rich Low_complexity Low_complexity 2 76 0 6 1335 327 49 0 0 chr9 98417618 98417659 -25658513 + (TTG)n Simple_repeat Simple_repeat 1 41 0 6 1335 245 250 16 16 chr9 98417685 98417746 -25658426 + MER20 DNA MER1_type 110 170 -49 6 1335 409 17 17 17 chr9 98418053 98418112 -25658060 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1335 2268 54 26 20 chr9 98419473 98419778 -25656394 - IAPLTR2b LTR ERVK -20 307 1 6 1335 1117 216 143 29 chr9 98420878 98421192 -25654980 - ORR1D1 LTR MaLR 0 379 13 6 1335 5961 192 45 42 chr9 98421223 98421578 -25654594 - ORR1D1-int LTR MaLR -13 1357 993 6 1335 1184 81 17 0 chr9 98421578 98421750 -25654422 + (TCTCCC)n Simple_repeat Simple_repeat 5 179 0 6 1335 5961 192 45 42 chr9 98421750 98422047 -25654125 - ORR1D1-int LTR MaLR -378 992 728 6 1335 2016 149 31 50 chr9 98422047 98422422 -25653750 + RMER17C LTR ERVK 1 378 -32 6 1335 522 0 0 0 chr9 98422422 98422480 -25653692 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 6 1335 1182 51 0 0 chr9 98422480 98422617 -25653555 - B1_Mm SINE Alu -10 137 1 6 1335 2016 149 31 50 chr9 98422617 98422658 -25653514 + RMER17C LTR ERVK 379 409 -1 6 1335 5961 192 45 42 chr9 98422658 98422733 -25653439 - ORR1D1-int LTR MaLR -643 727 658 6 1335 342 0 0 0 chr9 98422733 98422771 -25653401 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 6 1335 5961 192 45 42 chr9 98422771 98423306 -25652866 - ORR1D1-int LTR MaLR -713 657 90 6 1335 420 233 0 0 chr9 98423307 98423397 -25652775 + ORR1D1 LTR MaLR 1 90 -284 6 1335 221 328 0 0 chr9 98423546 98423610 -25652562 + GA-rich Low_complexity Low_complexity 1 64 0 6 1335 239 272 41 155 chr9 98423610 98423901 -25652271 - RMER10B LTR ERVL -134 264 7 6 1335 299 323 75 45 chr9 98424822 98425023 -25651149 - MIR SINE MIR -38 224 18 6 1335 534 31 0 0 chr9 98426716 98426780 -25649392 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1335 234 160 0 0 chr9 98426817 98426867 -25649305 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1335 306 87 0 0 chr9 98426904 98426950 -25649222 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1335 417 109 0 0 chr9 98426987 98427051 -25649121 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1335 360 0 0 0 chr9 98427128 98427168 -25649004 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 6 1335 601 293 6 48 chr9 98427342 98427507 -25648665 - RSINE1 SINE B4 -5 160 3 6 1335 264 296 88 39 chr9 98428264 98428366 -25647806 - MIRc SINE MIR -50 218 112 6 1335 279 93 0 0 chr9 98428729 98428772 -25647400 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1335 488 43 4 1 chr9 98428852 98428913 -25647259 + L1_Mm LINE L1 5525 5589 -297 6 1335 8131 36 20 2 chr9 98428913 98429881 -25646291 + L1Md_F2 LINE L1 5587 6571 -11 6 1335 420 120 53 13 chr9 98429881 98429895 -25646277 + L1_Mm LINE L1 5590 5603 -283 6 1335 715 285 29 35 chr9 98430431 98430673 -25645499 - MLT1C LTR MaLR -2 465 156 6 1335 1761 134 194 28 chr9 98430673 98431034 -25645138 + MTC LTR MaLR 1 421 0 6 1335 564 303 61 130 chr9 98431034 98431167 -25645005 - MLT1C LTR MaLR -235 155 39 6 1335 661 142 9 0 chr9 98431268 98431374 -25644798 - BC1_Mm scRNA scRNA -44 108 2 6 1335 433 227 17 76 chr9 98431423 98431542 -25644630 - MLT1C LTR MaLR -350 117 6 6 1335 250 226 32 0 chr9 98432259 98432321 -25643851 - MER5A DNA MER1_type -5 184 121 6 1335 185 297 31 15 chr9 98432480 98432545 -25643627 - MIRb SINE MIR -73 195 130 6 1335 548 196 0 10 chr9 98433349 98433447 -25642725 + B3 SINE B2 2 98 -118 6 1335 432 67 0 0 chr9 98433460 98433520 -25642652 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1335 618 281 30 0 chr9 98433520 98433655 -25642517 - RSINE1 SINE B4 -24 141 3 6 1335 937 298 164 22 chr9 98434179 98435031 -25641141 - L1ME1 LINE L1 -274 5905 4921 6 1336 267 244 61 0 chr9 98435079 98435161 -25641011 + MamRep4096 DNA hAT? 69 155 -271 6 1336 180 0 0 0 chr9 98435680 98435700 -25640472 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1336 347 273 152 7 chr9 98435742 98435893 -25640279 - L1MC4 LINE L1 -72 7970 7798 6 1336 22 0 0 0 chr9 98435929 98435951 -25640221 + AT_rich Low_complexity Low_complexity 1 22 0 6 1336 202 151 36 36 chr9 98436136 98436191 -25639981 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1336 376 252 169 66 chr9 98436327 98436493 -25639679 - B3A SINE B2 -14 184 2 6 1336 519 303 74 29 chr9 98436852 98437229 -25638943 + L1MC4a LINE L1 6911 7304 -578 6 1336 400 274 104 0 chr9 98437231 98437337 -25638835 + PB1D10 SINE Alu 1 117 0 6 1336 233 119 0 23 chr9 98437344 98437387 -25638785 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 6 1336 281 306 183 31 chr9 98437461 98437794 -25638378 + L1MC4a LINE L1 7463 7834 -161 6 1336 25 31 0 0 chr9 98437870 98437902 -25638270 + AT_rich Low_complexity Low_complexity 1 32 0 6 1336 221 337 48 19 chr9 98438538 98438641 -25637531 - MIR SINE MIR -132 130 25 6 1336 309 234 0 25 chr9 98438990 98439069 -25637103 + CT-rich Low_complexity Low_complexity 3 79 0 6 1336 414 0 0 0 chr9 98439550 98439596 -25636576 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1336 692 303 73 91 chr9 98439813 98440209 -25635963 + MT2A LTR ERVL 10 398 -135 6 1336 1305 113 112 10 chr9 98440302 98440507 -25635665 + URR1A DNA MER1_type 1 226 0 6 1336 229 273 230 37 chr9 98440537 98440666 -25635506 - MIRb SINE MIR -70 198 50 6 1336 753 223 0 20 chr9 98440851 98441002 -25635170 + B1F2 SINE Alu 1 148 -1 6 1336 1080 66 0 0 chr9 98441005 98441141 -25635031 + B1_Mus1 SINE Alu 1 136 -12 6 1336 2364 132 58 5 chr9 98441224 98441604 -25634568 + MTB_Mm LTR MaLR 3 402 -5 6 1336 615 181 99 130 chr9 98441667 98441890 -25634282 + B3 SINE B2 1 216 0 6 1336 267 185 37 0 chr9 98442332 98442386 -25633786 + PB1 SINE Alu 15 70 -57 6 1336 448 212 12 0 chr9 98442425 98442505 -25633667 + ID4_ SINE ID 3 83 0 6 1336 328 239 181 6 chr9 98442528 98442688 -25633484 + L1MC4a LINE L1 7668 7855 -27 6 1336 1299 274 123 38 chr9 98442732 98443459 -25632713 - L1MD1 LINE L1 -247 6386 5588 6 1336 1056 197 193 34 chr9 98443465 98443585 -25632587 - Lx9 LINE L1 0 7644 7516 6 1336 465 19 0 0 chr9 98443585 98443639 -25632533 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1336 1056 197 193 34 chr9 98443639 98443875 -25632297 - Lx9 LINE L1 -129 7515 7232 6 1336 450 256 102 65 chr9 98443921 98444167 -25632005 - L1MD1 LINE L1 -995 5542 5288 6 1336 1293 98 149 5 chr9 98444200 98444394 -25631778 - URR1A DNA MER1_type 0 226 5 6 1336 519 168 100 27 chr9 98444394 98444504 -25631668 + B1_Mur1 SINE Alu 19 136 -13 6 1336 198 0 0 0 chr9 98444504 98444526 -25631646 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 6 1336 341 271 17 70 chr9 98444697 98444812 -25631360 + B4A SINE B4 184 292 0 6 1336 450 0 0 0 chr9 98444814 98444864 -25631308 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1336 237 295 28 37 chr9 98444884 98444993 -25631179 - L1M5 LINE L1 -2267 3879 3772 6 1336 714 211 23 40 chr9 98445076 98445249 -25630923 - B3A SINE B2 -28 170 1 6 1336 1041 311 148 15 chr9 98445281 98445619 -25630553 - L1MD1 LINE L1 -2394 4143 3771 6 1336 288 0 0 0 chr9 98445619 98445651 -25630521 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1336 1041 311 148 15 chr9 98445651 98446172 -25630000 - L1MD1 LINE L1 -2767 3770 3171 6 1336 463 282 34 10 chr9 98446218 98446392 -25629780 - L1MD1 LINE L1 -5053 1580 1281 6 1336 673 127 0 63 chr9 98446469 98446595 -25629577 - B1_Mur4 SINE Alu 0 150 33 6 1336 985 280 128 55 chr9 98446631 98447133 -25629039 - L1MD1 LINE L1 -5311 1322 549 6 1336 1286 213 151 77 chr9 98447179 98447709 -25628463 + RMER4B LTR ERVK 17 585 0 6 1336 1031 318 52 52 chr9 98447782 98448247 -25627925 - L1MD1 LINE L1 -6021 612 148 6 1336 201 74 0 0 chr9 98448755 98448782 -25627390 + (CCA)n Simple_repeat Simple_repeat 1 27 0 6 1336 382 235 30 30 chr9 98449169 98449270 -25626902 + PB1D10 SINE Alu 1 101 -16 6 1336 296 241 54 36 chr9 98449177 98449289 -25626883 + ID_B1 SINE B4 90 203 -21 6 1336 180 77 0 0 chr9 98449291 98449317 -25626855 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 1336 2146 235 159 4 chr9 98450948 98451653 -25624519 + RCHARR1 DNA MER1_type 3 816 -158 6 1336 213 245 0 0 chr9 98451674 98451723 -25624449 + A-rich Low_complexity Low_complexity 1 49 0 7 1336 1016 263 37 7 chr9 98451744 98452016 -25624156 + B4A SINE B4 7 286 -6 7 1336 306 0 0 0 chr9 98452018 98452052 -25624120 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1336 254 295 93 21 chr9 98452240 98452337 -25623835 + MIR SINE MIR 44 147 -115 7 1336 398 244 176 43 chr9 98452405 98452593 -25623579 + MTD LTR MaLR 1 213 -206 7 1336 418 217 25 42 chr9 98452599 98452719 -25623453 + B1_Mur1 SINE Alu 32 149 0 7 1336 624 205 205 0 chr9 98452722 98452907 -25623265 + MTD LTR MaLR 197 419 0 7 1336 308 297 10 52 chr9 98452907 98452995 -25623177 + RSINE1 SINE B4 77 160 -5 7 1336 477 0 0 0 chr9 98453223 98453276 -25622896 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1336 360 0 0 0 chr9 98453276 98453315 -25622857 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1336 299 61 41 0 chr9 98453321 98453370 -25622802 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 7 1336 434 195 11 22 chr9 98454154 98454243 -25621929 + MTC LTR MaLR 1 88 -333 7 1336 517 189 0 105 chr9 98454250 98454374 -25621798 + MTC LTR MaLR 296 406 -1 7 1336 6158 162 31 55 chr9 98454374 98455547 -25620625 + MTC-int LTR MaLR 2 1142 -116 7 1336 1175 67 133 0 chr9 98455547 98455712 -25620460 + B2_Mm2 SINE B2 1 187 -8 7 1336 6158 162 31 55 chr9 98455712 98455826 -25620346 + MTC-int LTR MaLR 1143 1258 0 7 1336 1761 161 71 142 chr9 98455826 98455912 -25620260 + MTC LTR MaLR 1 89 -332 7 1336 1131 135 92 15 chr9 98455912 98456108 -25620064 + Lx4A LINE L1 6845 7055 -3 7 1336 1761 161 71 142 chr9 98456108 98456471 -25619701 + MTC LTR MaLR 90 418 -3 7 1336 378 0 0 0 chr9 98456701 98456743 -25619429 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 7 1336 1182 32 6 0 chr9 98456743 98456899 -25619273 - B2_Mm1a SINE B2 -35 158 2 7 1336 211 291 56 37 chr9 98457278 98457297 -25618875 + PB1D9 SINE Alu 12 120 0 7 1336 466 204 0 0 chr9 98457297 98457385 -25618787 + ID_B1 SINE B4 137 224 0 7 1336 694 243 40 18 chr9 98458884 98459082 -25617090 + B3A SINE B2 1 188 -7 7 1336 470 187 34 86 chr9 98459475 98459592 -25616580 + PB1D10 SINE Alu 1 111 -6 7 1336 462 18 0 0 chr9 98459596 98459651 -25616521 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1336 671 158 154 24 chr9 98459654 98459777 -25616395 - B1_Mus2 SINE Alu -6 141 3 7 1336 368 284 51 17 chr9 98459813 98459931 -25616241 + ID_B1 SINE B4 98 219 -5 7 1336 1243 218 139 29 chr9 98461836 98462210 -25613962 + MTD LTR MaLR 5 419 0 7 1336 21 0 0 0 chr9 98462892 98462913 -25613259 + AT_rich Low_complexity Low_complexity 1 21 0 7 1336 223 369 54 47 chr9 98463417 98463565 -25612607 + MIRc SINE MIR 2 150 -118 7 1336 213 114 29 0 chr9 98465912 98465947 -25610225 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1336 251 125 50 67 chr9 98466584 98466644 -25609528 + MER105 DNA DNA 119 177 -27 7 1336 330 293 201 30 chr9 98466989 98467164 -25609008 + Charlie1a DNA MER1_type 5 207 -1248 7 1336 390 269 28 0 chr9 98467164 98467272 -25608900 - PB1D10 SINE Alu -5 112 2 7 1336 1332 277 158 36 chr9 98467272 98468172 -25608000 + Charlie1a DNA MER1_type 208 1220 -235 7 1336 1045 80 0 14 chr9 98469601 98469740 -25606432 + B1_Mm SINE Alu 1 137 -10 7 1336 351 0 0 0 chr9 98470025 98470064 -25606108 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 1336 681 186 75 30 chr9 98470064 98470197 -25605975 - B1_Mur2 SINE Alu -10 139 1 7 1336 21 0 0 0 chr9 98471647 98471668 -25604504 + AT_rich Low_complexity Low_complexity 1 21 0 7 1336 504 45 0 0 chr9 98472190 98472257 -25603915 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1336 310 297 71 14 chr9 98473011 98473151 -25603021 - B1F SINE Alu 0 149 2 7 1336 1432 185 147 18 chr9 98473275 98473625 -25602547 - MTD LTR MaLR -14 405 20 7 1336 266 288 12 0 chr9 98474812 98474892 -25601280 + MIRb SINE MIR 24 104 -164 7 1336 8466 66 7 5 chr9 98475056 98476787 -25599385 - L1Md_F2 LINE L1 -3 6579 4843 7 1336 3109 47 30 0 chr9 98476782 98477187 -25598985 - L1Md_F2 LINE L1 -1502 4381 3965 7 1336 221 83 0 27 chr9 98477631 98477668 -25598504 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 7 1336 1125 205 9 9 chr9 98478395 98478621 -25597551 - URR1A DNA MER1_type 0 226 1 7 1336 421 292 94 8 chr9 98480022 98480267 -25595905 - L1ME1 LINE L1 -189 5990 5725 7 1336 27 29 0 0 chr9 98480388 98480422 -25595750 + AT_rich Low_complexity Low_complexity 1 34 0 7 1336 234 0 0 0 chr9 98481518 98481544 -25594628 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 7 1336 1847 113 116 25 chr9 98481904 98482257 -25593915 - ORR1B1 LTR MaLR -8 386 2 7 1336 429 36 0 0 chr9 98483001 98483056 -25593116 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1336 386 214 77 10 chr9 98483581 98483685 -25592487 + B1_Mm SINE Alu 17 127 -20 7 1336 504 276 97 13 chr9 98483995 98484149 -25592023 + B3 SINE B2 41 207 -9 7 1336 251 296 12 47 chr9 98487138 98487223 -25588949 - ID4 SINE ID 0 83 2 7 1336 762 11 0 0 chr9 98489822 98489909 -25586263 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 7 1336 659 77 144 0 chr9 98489909 98490013 -25586159 - B1_Mus2 SINE Alu -28 119 1 7 1336 334 274 15 46 chr9 98490707 98490837 -25585335 + RSINE1 SINE B4 3 128 -37 7 1336 322 203 40 26 chr9 98492305 98492381 -25583791 - PB1D10 SINE Alu 0 117 41 7 1336 772 226 118 13 chr9 98493215 98493453 -25582719 + B4 SINE B4 16 278 -14 7 1336 677 222 30 18 chr9 98493519 98493684 -25582488 - B4A SINE B4 -124 168 2 7 1336 731 152 24 147 chr9 98494694 98494864 -25581308 + B1_Mur2 SINE Alu 1 149 0 7 1336 732 232 81 9 chr9 98495283 98495505 -25580667 + MTE2b LTR MaLR 1 238 -141 7 1336 231 36 0 0 chr9 98495585 98495613 -25580559 + (G)n Simple_repeat Simple_repeat 1 28 0 7 1336 699 141 16 24 chr9 98495837 98495961 -25580211 + B1_Mus1 SINE Alu 26 148 0 7 1336 189 121 0 0 chr9 98495964 98495997 -25580175 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 7 1336 356 196 32 11 chr9 98496016 98496109 -25580063 + Lx8 LINE L1 6934 7028 -445 7 1336 709 250 20 39 chr9 98496112 98496316 -25579856 + Lx8 LINE L1 6989 7188 -285 7 1336 1786 184 53 16 chr9 98496668 98497048 -25579124 - MTD LTR MaLR -8 411 18 7 1336 957 181 88 0 chr9 98497714 98497878 -25578294 + B3 SINE B2 1 167 -49 7 1336 258 32 0 0 chr9 98497878 98497909 -25578263 + (CATA)n Simple_repeat Simple_repeat 4 34 0 7 1336 957 181 88 0 chr9 98497909 98497937 -25578235 + B3 SINE B2 168 208 -8 7 1336 3129 145 17 45 chr9 98499283 98499860 -25576312 + RLTR12A LTR ERVK 3 563 -5 7 1336 225 0 0 0 chr9 98500251 98500276 -25575896 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1336 199 298 83 97 chr9 98500284 98500429 -25575743 - MIRb SINE MIR 0 268 126 2 1336 2029 147 139 19 chr9 98500653 98501028 -25575144 - MTC LTR MaLR 0 421 2 3 1336 257 267 0 0 chr9 98502186 98502246 -25573926 - B4 SINE B4 -232 60 1 4 1336 462 271 116 20 chr9 98502364 98502511 -25573661 - RSINE1 SINE B4 -2 163 3 5 1336 305 319 68 34 chr9 98502567 98502639 -25573533 + L1M4b LINE L1 1833 1902 -5432 6 1336 1295 34 0 0 chr9 98502639 98502786 -25573386 + B1_Mus2 SINE Alu 1 147 0 7 1336 305 319 68 34 chr9 98502786 98502830 -25573342 + L1M4b LINE L1 1903 1953 -5381 6 1336 214 274 0 0 chr9 98502948 98503010 -25573162 + T-rich Low_complexity Low_complexity 1 62 0 8 1336 1368 80 0 0 chr9 98503299 98503718 -25572454 + (TGGA)n Simple_repeat Simple_repeat 1 419 0 9 1336 584 250 74 26 chr9 98504467 98504656 -25571516 - B4A SINE B4 -83 209 12 1 1336 1734 170 75 41 chr9 98504926 98505288 -25570884 - ORR1D1 LTR MaLR 0 374 1 1 1336 452 367 56 5 chr9 98505351 98505567 -25570605 - MLT1D LTR MaLR 0 505 279 1 1336 709 316 34 22 chr9 98505663 98505932 -25570240 - BGLII_B LTR ERVK -3 438 167 1 1336 3918 158 16 29 chr9 98505933 98506681 -25569491 + MYSERV6-int LTR ERVK 3392 4129 -4830 1 1336 1294 59 6 0 chr9 98506681 98506830 -25569342 + B2_Mm1a SINE B2 2 150 -43 1 1336 450 0 0 0 chr9 98506830 98506880 -25569292 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1 1336 1294 59 6 0 chr9 98506880 98506899 -25569273 + B2_Mm1a SINE B2 151 170 -23 1 1336 1548 235 45 68 chr9 98506899 98507370 -25568802 + MYSERV6-int LTR ERVK 4122 4581 -4378 1 1336 306 0 0 0 chr9 98507381 98507415 -25568757 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 1 1336 1800 270 68 47 chr9 98507415 98508239 -25567933 + MYSERV16_I-int LTR ERVK 74 914 -1412 1 1336 1166 156 143 4 chr9 98508245 98508503 -25567669 + RLTR11A2 LTR ERVK 233 526 -1 1 1336 576 42 0 0 chr9 98508503 98508574 -25567598 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 1336 362 308 15 37 chr9 98508584 98508719 -25567453 - MLT1D LTR MaLR -352 153 22 1 1336 240 130 0 0 chr9 98509874 98509920 -25566252 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1336 296 339 72 106 chr9 98509952 98510160 -25566012 - B4 SINE B4 0 292 92 2 1336 1030 241 76 22 chr9 98510410 98510686 -25565486 - B4A SINE B4 0 292 2 2 1336 1199 116 30 29 chr9 98510900 98511112 -25565060 + ORR1B1 LTR MaLR 1 177 -217 2 1336 915 245 102 67 chr9 98511136 98511538 -25564634 - RLTR11B LTR ERVK -31 422 7 2 1336 1435 112 23 0 chr9 98511548 98511762 -25564410 + ORR1B1 LTR MaLR 176 394 0 2 1336 299 232 43 0 chr9 98511823 98511892 -25564280 - L1M5 LINE L1 -740 5704 5633 2 1336 465 328 45 60 chr9 98511990 98512045 -25564127 - L1M5 LINE L1 -1130 5016 4961 2 1336 540 30 0 0 chr9 98512045 98512111 -25564061 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1336 507 335 41 57 chr9 98512111 98512585 -25563587 - L1M5 LINE L1 -1186 4960 4493 2 1336 1608 150 197 34 chr9 98512599 98512924 -25563248 - ORR1C1 LTR MaLR 0 378 1 3 1336 747 141 54 8 chr9 98512924 98513053 -25563119 - ORR1C1-int LTR MaLR 0 1509 1375 3 1336 420 20 0 0 chr9 98513053 98513102 -25563070 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1336 252 0 0 0 chr9 98513102 98513129 -25563043 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1336 333 0 0 0 chr9 98513129 98513165 -25563007 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1336 829 304 112 29 chr9 98513395 98513815 -25562357 - MLT1G1 LTR MaLR -67 512 8 3 1336 333 0 0 0 chr9 98514154 98514191 -25561981 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1336 351 0 0 0 chr9 98514191 98514229 -25561943 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1336 360 0 0 0 chr9 98514229 98514269 -25561903 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1336 531 0 0 0 chr9 98514269 98514327 -25561845 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1336 348 24 0 0 chr9 98515994 98516035 -25560137 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1336 487 298 65 27 chr9 98517183 98517369 -25558803 + MER53 DNA hAT 1 193 0 4 1336 335 373 32 12 chr9 98517700 98517885 -25558287 - MLT1A LTR MaLR -29 361 182 4 1336 189 0 0 0 chr9 98517923 98517944 -25558228 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1336 528 111 0 0 chr9 98517944 98518025 -25558147 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1336 987 278 68 12 chr9 98518028 98518279 -25557893 - B4 SINE B4 -27 265 1 4 1336 257 287 90 104 chr9 98518287 98518431 -25557741 - MLT1A LTR MaLR -213 152 11 4 1336 228 276 61 10 chr9 98518671 98518761 -25557411 + MIR SINE MIR 22 117 -159 4 1336 968 302 61 28 chr9 98520209 98520635 -25555537 - L1M5 LINE L1 -428 5751 5312 4 1336 1164 96 0 0 chr9 98520716 98520862 -25555310 - B1_Mus2 SINE Alu 0 147 2 4 1336 2378 78 14 52 chr9 98520924 98521289 -25554883 - L1_Mus4 LINE L1 -2 6634 6284 4 1336 368 278 183 15 chr9 98521533 98521730 -25554442 + RMER15 LTR ERVL 332 561 -14 4 1336 603 0 0 0 chr9 98522211 98522278 -25553894 + (CAGCT)n Simple_repeat Simple_repeat 3 69 0 5 1336 356 265 135 42 chr9 98522450 98522643 -25553529 - LTR50 LTR ERVL -568 227 17 5 1336 845 257 14 29 chr9 98523182 98523381 -25552791 - MTEb LTR MaLR -4 375 178 5 1336 1269 61 0 0 chr9 98523381 98523561 -25552611 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1336 290 53 34 34 chr9 98523569 98523628 -25552544 + (TCC)n Simple_repeat Simple_repeat 1 59 0 5 1336 493 305 79 6 chr9 98523629 98523794 -25552378 - MTEb LTR MaLR -200 179 3 5 1336 476 248 227 13 chr9 98523794 98523911 -25552261 + Lx8 LINE L1 7200 7325 -148 5 1336 450 0 0 0 chr9 98523911 98523961 -25552211 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1336 476 248 227 13 chr9 98523961 98524068 -25552104 + Lx8 LINE L1 7326 7471 -2 5 1336 1448 224 67 18 chr9 98526575 98526902 -25549270 + MTEb LTR MaLR 1 343 -36 5 1336 607 247 38 19 chr9 98527371 98527528 -25548644 - MTEa LTR MaLR -119 260 101 5 1336 244 314 142 46 chr9 98529295 98529492 -25546680 + MIR SINE MIR 35 250 -12 5 1336 276 111 0 0 chr9 98530416 98530461 -25545711 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 6 1336 2042 211 69 39 chr9 98531532 98532095 -25544077 - RCHARR1 DNA MER1_type -12 962 383 6 1336 541 318 72 5 chr9 98532114 98532307 -25543865 + B4 SINE B4 6 211 -81 6 1336 1590 236 75 61 chr9 98532307 98532891 -25543281 + RMER19A LTR ERVK 1 597 -14 6 1336 287 274 40 14 chr9 98532902 98532976 -25543196 + B4 SINE B4 208 283 -9 6 1336 337 336 0 0 chr9 98532985 98533098 -25543074 + (CA)n Simple_repeat Simple_repeat 1 113 0 6 1336 253 43 65 0 chr9 98533135 98533181 -25542991 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1336 1024 268 46 15 chr9 98533190 98533452 -25542720 - RCHARR1 DNA MER1_type -625 349 80 6 1336 183 309 28 42 chr9 98533514 98533585 -25542587 + MIRm SINE MIR 196 265 -11 6 1336 237 231 13 13 chr9 98534311 98534390 -25541782 + GA-rich Low_complexity Low_complexity 4 82 0 6 1336 1416 121 36 40 chr9 98536360 98536584 -25539588 + URR1B DNA MER1_type 1 223 -2 6 1336 341 300 45 30 chr9 98536951 98537085 -25539087 - MLT1F1 LTR MaLR 0 654 468 6 1336 222 191 0 0 chr9 98537338 98537385 -25538787 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 7 1336 363 210 32 23 chr9 98538194 98538290 -25537882 - MTEb LTR MaLR -7 387 284 7 1336 25 0 0 0 chr9 98539238 98539263 -25536909 + GC_rich Low_complexity Low_complexity 1 25 0 7 1336 594 305 78 23 chr9 98539265 98539540 -25536632 + MLT1A0 LTR MaLR 24 314 -60 7 1336 494 205 226 26 chr9 98541896 98542051 -25534121 - B3 SINE B2 -3 213 28 7 1336 303 370 9 9 chr9 98542227 98542376 -25533796 + MIRc SINE MIR 8 156 -106 7 1336 1073 303 126 15 chr9 98543605 98544001 -25532171 + MER119 DNA MER1_type 79 518 -65 7 1336 390 302 92 0 chr9 98545138 98545257 -25530915 + MER53 DNA hAT 53 182 -11 7 1336 220 318 126 0 chr9 98545430 98545548 -25530624 + MIR SINE MIR 35 159 -103 7 1336 210 355 44 66 chr9 98546953 98547134 -25529038 + L2c LINE L2 3139 3315 -72 7 1336 426 328 74 32 chr9 98547166 98547355 -25528817 - MIRb SINE MIR -34 234 38 8 1336 193 218 104 94 chr9 98548520 98548616 -25527556 - MIRm SINE MIR -65 211 115 8 1336 271 351 22 30 chr9 98550077 98550212 -25525960 + MER96B DNA hAT 282 415 -2 8 1336 1204 165 58 0 chr9 98550390 98550596 -25525576 - URR1A DNA MER1_type -1 225 8 8 1336 200 246 84 11 chr9 98551518 98551605 -25524567 + MIRc SINE MIR 101 199 -77 8 1336 1485 177 68 44 chr9 98551690 98551866 -25524306 + RMER17C LTR ERVK 18 210 -200 8 1336 198 0 0 0 chr9 98551866 98551888 -25524284 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1336 252 0 0 0 chr9 98551888 98551915 -25524257 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1336 1485 177 68 44 chr9 98551915 98552121 -25524051 + RMER17C LTR ERVK 211 409 -1 8 1336 657 110 0 0 chr9 98552498 98552616 -25523556 + (GA)n Simple_repeat Simple_repeat 2 119 0 8 1336 988 135 14 0 chr9 98552617 98552758 -25523414 - B1_Mur4 SINE Alu -7 143 1 8 1336 580 204 102 80 chr9 98552798 98552985 -25523187 + B3A SINE B2 4 194 -4 9 1336 211 245 57 0 chr9 98553000 98553053 -25523119 - MIRb SINE MIR -8 260 205 9 1336 1080 96 17 0 chr9 98553875 98554052 -25522120 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1336 270 0 0 0 chr9 98554301 98554331 -25521841 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1336 265 343 100 18 chr9 98554861 98554889 -25521283 + ID SINE ID 46 82 -142 9 1336 345 268 8 51 chr9 98554889 98555007 -25521165 + PB1D10 SINE Alu 4 116 -1 9 1336 354 260 39 0 chr9 98555018 98555095 -25521077 + ID4 SINE ID 4 83 0 9 1336 241 242 30 15 chr9 98555343 98555410 -25520762 + MER5A DNA MER1_type 18 85 -104 9 1336 513 0 0 0 chr9 98555866 98555923 -25520249 + (GGA)n Simple_repeat Simple_repeat 1 57 0 9 1336 218 283 19 0 chr9 98558152 98558205 -25517967 - L2b LINE L2 -4 3371 3318 9 1336 207 391 119 8 chr9 98558349 98558483 -25517689 - L2b LINE L2 -222 3165 3017 9 1336 192 353 125 13 chr9 98559911 98560063 -25516109 + MIRb SINE MIR 6 174 -94 1 1336 404 274 50 7 chr9 98561322 98561514 -25514658 - L1ME2 LINE L1 -156 6008 5807 1 1336 2532 140 21 3 chr9 98561516 98561903 -25514269 + ORR1B1 LTR MaLR 1 394 0 1 1336 754 103 0 0 chr9 98561903 98562010 -25514162 + ORR1B1-int LTR MaLR 1 107 -1856 1 1336 610 146 29 318 chr9 98562006 98562136 -25514036 + ORR1B1-int LTR MaLR 556 718 -1245 1 1336 1424 167 38 58 chr9 98562136 98562262 -25513910 + MT2B LTR ERVL 1 132 -469 1 1336 1246 79 39 22 chr9 98562262 98562444 -25513728 + B2_Mm1t SINE B2 1 185 -8 1 1336 610 146 29 318 chr9 98562444 98562568 -25513604 + ORR1B1-int LTR MaLR 719 826 -1137 1 1336 1424 167 38 58 chr9 98562568 98562610 -25513562 + MT2B LTR ERVL 133 286 -315 1 1336 524 213 84 30 chr9 98562588 98562719 -25513453 + B1_Mur4 SINE Alu 9 146 -4 1 1336 468 0 0 0 chr9 98563626 98563678 -25512494 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1336 1234 236 137 36 chr9 98565413 98566021 -25510151 + L1M4 LINE L1 3087 3755 -2391 1 20 419 265 175 68 chr9 98566086 98566337 -25509835 - B4 SINE B4 -11 281 4 1 1337 526 253 27 7 chr9 98566341 98566488 -25509684 + L1M4 LINE L1 3786 3935 -2211 1 1337 414 219 89 8 chr9 98566814 98566938 -25509234 - Arthur1B DNA Tip100 -2 1223 1090 1 1337 187 200 0 0 chr9 98567897 98567932 -25508240 - MIRc SINE MIR -120 148 114 1 1337 199 354 0 24 chr9 98568378 98568462 -25507710 + MIR SINE MIR 102 183 -79 1 1337 480 282 20 28 chr9 98568705 98568863 -25507309 + MIRb SINE MIR 23 177 -85 1 1337 448 276 104 56 chr9 98570576 98570845 -25505327 - RMER10A LTR ERVL -17 425 144 1 1337 261 0 0 0 chr9 98570846 98570875 -25505297 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1337 510 31 0 0 chr9 98571240 98571304 -25504868 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1337 326 227 66 91 chr9 98571634 98571755 -25504417 - MLT1K LTR MaLR -313 282 165 1 1337 2941 12 0 0 chr9 98572577 98572899 -25503273 - RLTRETN_Mm LTR ERVK 0 322 1 1 1337 280 259 0 23 chr9 98573408 98573495 -25502677 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1337 1108 231 88 12 chr9 98573495 98573824 -25502348 - Lx8 LINE L1 -147 7326 6973 1 1337 203 185 185 0 chr9 98573859 98573913 -25502259 + L2a LINE L2 3302 3365 -61 1 1337 253 291 126 0 chr9 98575781 98575884 -25500288 - L2c LINE L2 0 3387 3272 1 1337 2151 116 6 24 chr9 98577236 98577571 -25498601 - ORR1A4 LTR MaLR 0 329 1 1 1337 300 294 22 0 chr9 98577926 98578018 -25498154 + GA-rich Low_complexity Low_complexity 4 97 0 1 1337 3170 8 43 0 chr9 98578024 98578376 -25497796 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1337 21092 18 3 0 chr9 98578376 98580827 -25495345 - IAPEz-int LTR ERVK 0 6481 4024 1 1337 22700 32 31 3 chr9 98580826 98583606 -25492566 - IAPEz-int LTR ERVK -3590 2891 35 1 1337 3159 11 43 0 chr9 98583616 98583968 -25492204 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1337 183 203 15 30 chr9 98584006 98584072 -25492100 + GA-rich Low_complexity Low_complexity 6 70 0 1 1337 293 265 47 35 chr9 98584527 98584613 -25491559 + B1F1 SINE Alu 26 112 -37 1 1337 777 81 0 0 chr9 98585193 98585316 -25490856 + (CA)n Simple_repeat Simple_repeat 1 123 0 1 1337 788 118 0 8 chr9 98585443 98585571 -25490601 + (GGA)n Simple_repeat Simple_repeat 3 129 0 1 1337 522 0 0 0 chr9 98585572 98585630 -25490542 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 1 1337 996 179 34 73 chr9 98586423 98586628 -25489544 + B3A SINE B2 1 197 -1 1 1337 301 0 122 0 chr9 98586728 98586777 -25489395 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 1 1337 1224 61 7 0 chr9 98586777 98586924 -25489248 - B1_Mus1 SINE Alu 0 148 1 1 1337 342 217 0 0 chr9 98587696 98587811 -25488361 + GA-rich Low_complexity Low_complexity 1 115 0 1 1337 240 247 11 34 chr9 98588117 98588205 -25487967 + GA-rich Low_complexity Low_complexity 3 88 0 1 1337 6686 64 9 0 chr9 98588386 98589308 -25486864 + L1Md_F2 LINE L1 2510 3439 -2444 1 1337 3748 45 2 0 chr9 98589309 98589779 -25486393 + L1Md_F2 LINE L1 5116 5586 -297 1 1337 8355 45 0 1 chr9 98589779 98590776 -25485396 + L1Md_F2 LINE L1 5587 6582 0 1 1337 1761 265 88 14 chr9 98590917 98591494 -25484678 + Lx7 LINE L1 6538 7157 -539 1 1337 270 0 0 0 chr9 98591497 98591527 -25484645 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1337 608 266 52 46 chr9 98592166 98592473 -25483699 - RLTR15 LTR ERVK -8 351 43 1 1337 815 272 62 21 chr9 98592595 98592884 -25483288 + RMER15 LTR ERVL 275 575 0 1 1337 492 319 35 7 chr9 98593176 98593321 -25482851 + RSINE1 SINE B4 3 151 -14 1 1337 1017 106 0 16 chr9 98593335 98593518 -25482654 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1337 528 337 131 83 chr9 98593535 98594776 -25481396 + L1M5 LINE L1 3106 4405 -1741 1 1337 475 272 100 103 chr9 98594808 98595099 -25481073 + B4 SINE B4 1 290 -2 1 1337 491 148 33 13 chr9 98595099 98595250 -25480922 + GA-rich Low_complexity Low_complexity 1 154 0 1 1337 443 317 97 60 chr9 98595473 98596010 -25480162 + L1ME5 LINE L1 5428 5984 -210 1 1337 862 329 44 39 chr9 98596149 98596510 -25479662 + MLT1A0 LTR MaLR 1 363 -2 1 1337 300 356 77 57 chr9 98597039 98597137 -25479035 + L1M5 LINE L1 4957 5059 -1087 1 1337 188 0 74 0 chr9 98597137 98597164 -25479008 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1337 300 356 77 57 chr9 98597164 98597401 -25478771 + L1M5 LINE L1 5060 5299 -847 1 1337 275 334 79 15 chr9 98597472 98597800 -25478372 + L1M5 LINE L1 5405 5753 -441 1 1337 239 258 145 0 chr9 98598706 98598768 -25477404 + ID2 SINE ID 13 83 0 1 1337 284 188 0 15 chr9 98598793 98598858 -25477314 + GA-rich Low_complexity Low_complexity 3 66 0 1 1337 2717 233 69 19 chr9 98598991 98599691 -25476481 + Lx8 LINE L1 6299 7033 -440 1 1337 247 160 11 56 chr9 98599696 98599875 -25476297 + GA-rich Low_complexity Low_complexity 4 174 0 1 1337 1160 75 7 0 chr9 98600157 98600303 -25475869 + B1_Mus2 SINE Alu 1 147 0 1 1337 30 0 0 0 chr9 98600303 98600333 -25475839 + AT_rich Low_complexity Low_complexity 1 30 0 1 1337 246 265 143 0 chr9 98600508 98600606 -25475566 - MER2 DNA MER2_type -191 154 43 1 1337 390 42 0 0 chr9 98600720 98600768 -25475404 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1337 207 0 0 0 chr9 98600768 98600790 -25475382 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1337 2285 205 70 32 chr9 98600851 98601435 -25474737 - Lx7 LINE L1 -289 7407 6802 1 1337 311 264 58 39 chr9 98601440 98601594 -25474578 - L1_Mur3 LINE L1 -6895 817 661 1 1337 225 0 0 0 chr9 98601599 98601624 -25474548 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 1 1337 21 36 0 0 chr9 98602042 98602070 -25474102 + AT_rich Low_complexity Low_complexity 1 28 0 1 1337 216 97 0 0 chr9 98602240 98602271 -25473901 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1337 221 83 28 0 chr9 98603122 98603158 -25473014 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1337 265 363 18 0 chr9 98603492 98603605 -25472567 + MIR3 SINE MIR 94 208 0 1 1337 21 0 0 0 chr9 98603611 98603632 -25472540 + AT_rich Low_complexity Low_complexity 1 21 0 1 1337 231 242 160 84 chr9 98606430 98606561 -25469611 - MIR SINE MIR -117 145 5 1 1337 245 247 22 33 chr9 98607700 98607792 -25468380 - HAL1b LINE L1 -53 1956 1866 1 1337 197 83 28 0 chr9 98607863 98607899 -25468273 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1337 237 196 0 0 chr9 98611218 98611274 -25464898 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1337 297 0 0 0 chr9 98611330 98611363 -25464809 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1337 853 241 18 57 chr9 98612038 98612116 -25464056 + ID SINE ID 2 77 -147 1 1337 264 59 0 0 chr9 98612116 98612150 -25464022 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1337 853 241 18 57 chr9 98612150 98612300 -25463872 + ID_B1 SINE B4 78 221 -3 1 1337 747 167 72 20 chr9 98612301 98612454 -25463718 + B3 SINE B2 1 161 -55 1 1337 252 268 0 0 chr9 98613613 98613695 -25462477 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1337 336 305 62 49 chr9 98613702 98613864 -25462308 + MIR SINE MIR 24 187 -75 1 1337 380 358 74 12 chr9 98614034 98614277 -25461895 - L2c LINE L2 -5 3382 3125 1 1337 548 256 49 72 chr9 98614449 98614518 -25461654 + CYRA11_Mm Unknown Y-chromosome 107 170 -447 1 1337 1358 158 0 39 chr9 98614518 98614748 -25461424 - URR1A DNA MER1_type 0 226 6 1 1337 287 237 5 0 chr9 98614783 98614864 -25461308 - MIRm SINE MIR -81 181 100 1 1337 477 90 0 0 chr9 98614961 98615028 -25461144 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1337 222 308 9 96 chr9 98615627 98615742 -25460430 + MIRb SINE MIR 79 183 -85 1 1337 389 76 15 0 chr9 98615795 98615861 -25460311 + (TTTTG)n Simple_repeat Simple_repeat 1 67 0 1 1337 1145 84 0 0 chr9 98615864 98616006 -25460166 - B1_Mus1 SINE Alu -5 143 2 1 1337 306 306 28 167 chr9 98617084 98617335 -25458837 + L1MEd LINE L1 323 538 -5581 1 1337 437 280 28 0 chr9 98618246 98618353 -25457819 - PB1D10 SINE Alu 0 117 8 1 1337 725 189 3 0 chr9 98618962 98619315 -25456857 + (CA)n Simple_repeat Simple_repeat 1 354 0 1 1337 188 281 0 81 chr9 98619793 98619855 -25456317 + L4 LINE RTE 1757 1813 -216 1 1337 705 12 0 0 chr9 98619857 98619939 -25456233 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1337 1943 168 16 77 chr9 98619939 98620014 -25456158 - ORR1D1 LTR MaLR -9 365 292 1 1337 783 214 14 7 chr9 98620014 98620160 -25456012 + B1_Mur4 SINE Alu 2 148 -2 1 1337 1943 168 16 77 chr9 98620160 98620472 -25455700 - ORR1D1 LTR MaLR -83 291 2 1 1337 201 364 43 55 chr9 98620707 98620870 -25455302 + L2c LINE L2 3049 3209 -178 1 1337 376 333 25 8 chr9 98620967 98621085 -25455087 - PB1D9 SINE Alu 0 120 1 1 1337 676 325 99 45 chr9 98621442 98622245 -25453927 + L1MEf LINE L1 31 831 -5369 1 1337 306 0 0 0 chr9 98623294 98623328 -25452844 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1337 677 73 0 10 chr9 98624016 98624113 -25452059 + (TTTC)n Simple_repeat Simple_repeat 3 98 0 1 1337 964 128 30 30 chr9 98624119 98624288 -25451884 - B2_Mm2 SINE B2 -26 169 1 1 1337 260 271 71 30 chr9 98624831 98624893 -25451279 + MLT1A LTR MaLR 65 130 -244 1 1337 1047 189 87 9 chr9 98624893 98625123 -25451049 - MTD LTR MaLR -2 417 170 1 1337 213 121 0 0 chr9 98625171 98625204 -25450968 + (GGA)n Simple_repeat Simple_repeat 2 34 0 1 1337 1540 287 64 95 chr9 98625400 98626640 -25449532 - L1MB1 LINE L1 -246 5922 4722 2 1337 815 239 206 12 chr9 98626647 98626986 -25449186 + L1M3 LINE L1 3990 4394 -1746 2 1337 1116 63 35 0 chr9 98627442 98627584 -25448588 + B1_Mm SINE Alu 1 147 0 2 1337 217 304 13 0 chr9 98628289 98628368 -25447804 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 1337 956 132 48 125 chr9 98629113 98629321 -25446851 + RMER15 LTR ERVL 380 571 -4 2 1337 409 329 81 0 chr9 98629374 98629584 -25446588 - L1MA4 LINE L1 -358 5942 5716 2 1337 2082 104 48 0 chr9 98629626 98629935 -25446237 + RLTR15 LTR ERVK 1 324 -35 2 1337 2262 278 109 25 chr9 98629937 98630058 -25446114 + Lx8 LINE L1 6502 6625 -848 2 1337 2013 182 16 13 chr9 98630058 98630430 -25445742 + ORR1D1 LTR MaLR 1 373 -1 2 1337 2262 278 109 25 chr9 98630430 98631179 -25444993 + Lx8 LINE L1 6626 7445 -28 2 1337 25 0 0 0 chr9 98631193 98631218 -25444954 + AT_rich Low_complexity Low_complexity 1 25 0 2 1337 1261 77 55 0 chr9 98631234 98631415 -25444757 - B2_Mm1a SINE B2 -2 191 1 2 1337 870 234 93 18 chr9 98631639 98631865 -25444307 - RMER15 LTR ERVL -329 246 4 2 1337 1001 280 62 36 chr9 98631988 98632239 -25443933 + L1M3 LINE L1 4389 4650 -1490 2 1337 2480 133 8 0 chr9 98632239 98632614 -25443558 + ORR1C1 LTR MaLR 1 378 0 2 1337 1001 280 62 36 chr9 98632614 98632866 -25443306 + L1M3 LINE L1 4651 4905 -1235 2 1337 356 0 23 0 chr9 98632875 98632919 -25443253 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1337 315 322 120 6 chr9 98633853 98634141 -25442031 - L1ME2 LINE L1 -174 6005 5699 2 1337 24 0 0 0 chr9 98634153 98634177 -25441995 + AT_rich Low_complexity Low_complexity 1 24 0 2 1337 988 274 64 66 chr9 98634316 98634413 -25441759 - L1MA5 LINE L1 -394 5906 5800 2 1337 303 71 0 0 chr9 98634413 98634455 -25441717 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1337 988 277 70 65 chr9 98634455 98634892 -25441280 - L1MA5 LINE L1 -498 5799 5343 2 1337 383 278 59 31 chr9 98635013 98635274 -25440898 - L1ME2 LINE L1 -671 5503 5240 2 1337 1891 225 32 19 chr9 98635286 98635698 -25440474 - MTD LTR MaLR -2 417 1 2 1337 611 335 53 0 chr9 98637622 98637810 -25438362 - ID_B1 SINE B4 -11 213 16 2 1337 598 306 151 28 chr9 98638814 98639133 -25437039 + ORR1E LTR MaLR 1 358 -1 2 1337 297 325 12 0 chr9 98639219 98639302 -25436870 - ID SINE ID -135 89 6 2 1337 561 261 23 8 chr9 98639315 98639446 -25436726 - B1F SINE Alu -7 142 10 2 1337 190 263 0 34 chr9 98639529 98639588 -25436584 - L3 LINE CR1 -1067 3422 3366 2 1337 205 235 20 0 chr9 98640354 98640405 -25435767 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1337 775 173 101 0 chr9 98641459 98641598 -25434574 + RLTR20A2 LTR ERVK 7 159 -419 2 1337 2006 277 78 40 chr9 98641828 98642598 -25433574 - Lx8 LINE L1 -454 7019 6221 2 1337 21 95 0 0 chr9 98642604 98642667 -25433505 + AT_rich Low_complexity Low_complexity 1 63 0 2 1337 1144 235 50 36 chr9 98642872 98643247 -25432925 - Lx8 LINE L1 -216 5955 5501 2 1337 422 127 0 44 chr9 98643502 98643593 -25432579 - L1Md_F3 LINE L1 0 6584 6498 2 1337 1442 33 0 6 chr9 98643797 98643978 -25432194 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 2 1337 225 243 27 54 chr9 98644027 98644101 -25432071 - RMER10A LTR ERVL -352 90 19 2 1337 298 296 14 0 chr9 98644284 98644355 -25431817 + 5S rRNA rRNA 19 90 -31 2 1337 559 289 144 66 chr9 98644497 98644831 -25431341 + MLT1J LTR MaLR 104 463 -49 2 1337 342 0 0 0 chr9 98644865 98644903 -25431269 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1337 710 113 9 0 chr9 98644903 98645018 -25431154 + (TA)n Simple_repeat Simple_repeat 1 116 0 2 1337 505 317 77 34 chr9 98645425 98645634 -25430538 - MER20 DNA MER1_type -1 218 1 2 1337 221 349 74 19 chr9 98646083 98646191 -25429981 - L2c LINE L2 -41 3346 3209 2 1337 2526 49 10 241 chr9 98646225 98646732 -25429440 + RLTR10 LTR ERVK 1 390 0 2 1337 17129 38 1 13 chr9 98646767 98648761 -25427411 + RLTR10-int LTR ERVK 16 1984 -3 2 1337 2576 52 10 218 chr9 98648763 98649255 -25426917 + RLTR10 LTR ERVK 1 390 0 2 1337 628 301 160 16 chr9 98650737 98651044 -25425128 + MER115 DNA Tip100 236 586 -107 2 1337 198 0 0 0 chr9 98651050 98651072 -25425100 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1337 476 223 0 5 chr9 98651072 98651275 -25424897 + GA-rich Low_complexity Low_complexity 1 201 0 2 1337 218 279 7 22 chr9 98651307 98651446 -25424726 + GA-rich Low_complexity Low_complexity 1 137 0 2 1337 246 197 29 116 chr9 98651446 98651515 -25424657 + MER115 DNA Tip100 626 688 -5 2 1337 242 307 21 54 chr9 98651943 98652036 -25424136 - Charlie15a DNA MER1_type 0 224 135 2 1337 310 345 130 39 chr9 98652231 98652439 -25423733 + MLT1K LTR MaLR 92 318 -277 2 1337 223 290 114 30 chr9 98653548 98653681 -25422491 - MIR SINE MIR -62 146 9 2 1337 702 24 0 0 chr9 98655077 98655161 -25421011 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 2 1337 225 65 0 0 chr9 98655491 98655522 -25420650 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1337 2286 147 62 21 chr9 98655938 98656326 -25419846 - MTC LTR MaLR -17 404 1 2 1337 4485 154 137 148 chr9 98656326 98657597 -25418575 - MTC-int LTR MaLR 0 1258 2 2 1337 2222 145 65 28 chr9 98657600 98657997 -25418175 - MTC LTR MaLR -8 413 2 2 1337 188 355 82 38 chr9 98658306 98658464 -25417708 + MIRc SINE MIR 16 180 -88 2 1337 315 0 0 0 chr9 98659282 98659317 -25416855 + (CCTG)n Simple_repeat Simple_repeat 4 38 0 2 1337 214 276 191 0 chr9 98659355 98659460 -25416712 - MIR3 SINE MIR -69 139 15 2 1337 287 164 16 0 chr9 98659701 98659762 -25416410 + (CAA)n Simple_repeat Simple_repeat 2 63 0 2 1337 546 200 50 8 chr9 98659794 98659915 -25416257 + B3 SINE B2 85 210 -6 2 1337 930 95 233 6 chr9 98660053 98660212 -25415960 + B2_Mm2 SINE B2 1 195 0 2 1337 779 22 0 0 chr9 98660212 98660301 -25415871 - L1Md_F2 LINE L1 -502 6080 5992 2 1337 3962 76 9 23 chr9 98660301 98660962 -25415210 + L1Md_F2 LINE L1 6061 6582 0 2 1337 677 259 96 57 chr9 98661092 98661321 -25414851 - MTD LTR MaLR -172 247 10 2 1337 246 370 84 0 chr9 98661325 98661528 -25414644 + L1MA9 LINE L1 1685 1904 -4946 2 1337 442 287 109 51 chr9 98661605 98661936 -25414236 + L1MA9 LINE L1 2316 2665 -4184 2 1337 200 195 0 24 chr9 98662353 98662395 -25413777 + G-rich Low_complexity Low_complexity 1 41 0 2 1337 1846 255 124 21 chr9 98662395 98662578 -25413594 + L1MA9 LINE L1 2757 2945 -3897 2 1337 992 205 43 14 chr9 98662578 98662777 -25413395 + B3 SINE B2 2 209 -7 2 1337 324 0 0 0 chr9 98662777 98662813 -25413359 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2 1337 1846 259 90 56 chr9 98662821 98663480 -25412692 + L1MA9 LINE L1 2946 3637 -3205 2 1337 649 209 31 0 chr9 98663482 98663611 -25412561 + RSINE1 SINE B4 2 134 -31 2 1337 717 232 21 106 chr9 98663640 98664016 -25412156 + L1MA9 LINE L1 3634 3977 -2865 2 1337 498 211 198 10 chr9 98664164 98664356 -25411816 + Lx9 LINE L1 7417 7644 0 2 1337 484 262 18 48 chr9 98664380 98664548 -25411624 + L1MA9 LINE L1 4266 4428 -2414 2 1337 393 294 84 25 chr9 98664623 98664825 -25411347 - Lx7 LINE L1 -396 7300 7087 2 1337 183 42 0 0 chr9 98664919 98664943 -25411229 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1337 299 171 0 41 chr9 98665000 98665073 -25411099 + Lx7 LINE L1 7612 7681 -15 2 1337 1112 76 0 14 chr9 98665125 98665271 -25410901 + B2_Mm2 SINE B2 11 154 -41 2 1337 372 22 0 0 chr9 98665273 98665318 -25410854 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 2 1337 304 288 124 24 chr9 98665333 98665543 -25410629 + L1MA9 LINE L1 5790 6020 -822 2 1337 412 356 0 15 chr9 98665607 98665744 -25410428 + B1F SINE Alu 12 146 -3 2 1337 1019 270 76 79 chr9 98665755 98666234 -25409938 + L1MA9 LINE L1 6002 6496 -518 2 1337 423 56 0 0 chr9 98666234 98666288 -25409884 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1337 1019 270 76 79 chr9 98666288 98666403 -25409769 + L1MA9 LINE L1 6497 6594 -420 2 1337 564 42 0 0 chr9 98666408 98666479 -25409693 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1337 963 198 55 20 chr9 98666493 98666694 -25409478 + B3 SINE B2 8 215 -1 2 1337 2781 18 95 6 chr9 98666828 98667165 -25409007 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1337 1051 119 74 0 chr9 98667165 98667341 -25408831 + IAPEz-int LTR ERVK 8 196 -6285 2 1337 7786 75 107 12 chr9 98667312 98668501 -25407671 + IAPEz-int LTR ERVK 67 1313 -5168 2 1337 29322 22 1 2 chr9 98668500 98671777 -25404395 + IAPEz-int LTR ERVK 3210 6481 0 2 1337 2806 15 95 6 chr9 98671777 98672114 -25404058 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1337 271 342 9 21 chr9 98672646 98672762 -25403410 + MTEb LTR MaLR 267 379 0 2 1337 522 203 0 0 chr9 98673054 98673197 -25402975 + (CCA)n Simple_repeat Simple_repeat 3 145 0 2 1337 259 98 24 0 chr9 98673198 98673239 -25402933 - MER20 DNA MER1_type -156 63 22 2 1337 234 0 0 0 chr9 98673588 98673614 -25402558 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1337 1332 88 10 25 chr9 98674748 98674946 -25401226 + MTB_Mm LTR MaLR 1 195 -212 2 1337 3451 87 4 9 chr9 98674946 98675409 -25400763 + L1_Mus3 LINE L1 6164 6624 -14 2 1337 49 104 0 0 chr9 98675409 98675591 -25400581 + AT_rich Low_complexity Low_complexity 1 182 0 2 1337 555 0 0 39 chr9 98676073 98676151 -25400021 + (AGGGGG)n Simple_repeat Simple_repeat 3 77 0 2 1337 1346 118 26 39 chr9 98676151 98676380 -25399792 + MTB_Mm LTR MaLR 182 407 0 2 1337 1865 229 52 30 chr9 98676664 98677123 -25399049 + RLTR17 LTR ERVK 224 692 0 2 1337 688 268 32 0 chr9 98677127 98677317 -25398855 - B3A SINE B2 -2 196 1 2 1337 368 254 46 18 chr9 98677329 98677453 -25398719 - L1MA4A LINE L1 -240 5940 5813 2 1337 4325 155 54 40 chr9 98677453 98678247 -25397925 - RMER19B LTR ERVK -97 805 1 2 1337 280 207 17 17 chr9 98678261 98678320 -25397852 - B1F1 SINE Alu -86 63 5 2 1337 23 0 0 0 chr9 98678397 98678420 -25397752 + AT_rich Low_complexity Low_complexity 1 23 0 2 1337 225 363 122 60 chr9 98679098 98679400 -25396772 + L2b LINE L2 3055 3375 0 2 1337 295 238 77 5 chr9 98679457 98679545 -25396627 + PB1D10 SINE Alu 6 97 -52 2 1337 1344 85 26 5 chr9 98679565 98679755 -25396417 + B2_Mm2 SINE B2 2 195 0 2 1337 1152 55 7 7 chr9 98679759 98679906 -25396266 + B1_Mus1 SINE Alu 1 147 -1 2 1337 189 171 0 0 chr9 98679977 98680012 -25396160 + A-rich Low_complexity Low_complexity 1 35 0 2 1337 1176 146 6 0 chr9 98680738 98680916 -25395256 - Lx4A LINE L1 -418 6640 6462 2 1337 873 244 95 81 chr9 98681062 98681102 -25395070 + B4 SINE B4 2 39 -253 2 1337 4097 78 55 18 chr9 98681102 98681665 -25394507 + MT2B2 LTR ERVL 1 584 0 2 1337 873 244 95 81 chr9 98681665 98681725 -25394447 + B4 SINE B4 40 83 -209 2 1337 871 160 28 0 chr9 98681725 98681869 -25394303 + B1_Mur1 SINE Alu 2 149 0 2 1337 873 244 95 81 chr9 98681869 98682052 -25394120 + B4 SINE B4 84 290 -2 2 1337 1177 68 0 0 chr9 98682166 98682313 -25393859 - B1_Mus1 SINE Alu 0 148 2 2 1337 24 0 0 0 chr9 98682318 98682342 -25393830 + AT_rich Low_complexity Low_complexity 1 24 0 2 1337 1065 229 155 53 chr9 98682375 98682716 -25393456 - MTE2b LTR MaLR 0 379 4 2 1337 1005 147 84 25 chr9 98682741 98682943 -25393229 + URR1B DNA MER1_type 7 220 -5 2 1337 1714 159 176 6 chr9 98683233 98683586 -25392586 - MTD LTR MaLR 0 419 7 2 1337 340 324 52 21 chr9 98683609 98683801 -25392371 - L1M5 LINE L1 -668 5572 5375 3 1337 304 294 121 11 chr9 98683906 98684088 -25392084 - L1M5 LINE L1 -939 5207 5006 3 1337 1533 166 63 81 chr9 98684111 98684436 -25391736 + RLTR12B LTR ERVK 1 319 -209 3 1337 1053 115 81 0 chr9 98684436 98684610 -25391562 + B2_Mm2 SINE B2 1 188 -7 3 1337 1170 102 0 0 chr9 98684618 98685122 -25391050 + (CA)n Simple_repeat Simple_repeat 1 504 0 3 1337 973 163 77 26 chr9 98685125 98685320 -25390852 + RLTR12B LTR ERVK 313 517 -11 3 1337 294 236 250 27 chr9 98685332 98685480 -25390692 - L1M5 LINE L1 -1206 4940 4760 3 1337 433 255 26 12 chr9 98685528 98685694 -25390478 - L1M5 LINE L1 -1589 4557 4389 3 1337 1186 276 75 80 chr9 98685730 98686183 -25389989 - Lx8 LINE L1 -618 6855 6405 3 1337 267 272 70 23 chr9 98686356 98686484 -25389688 - L1M3 LINE L1 -1955 4185 4052 3 1337 642 276 162 64 chr9 98686559 98687083 -25389089 - L1M5 LINE L1 -2181 3965 3393 3 1337 1222 109 11 0 chr9 98687085 98687260 -25388912 + B2_Mm1t SINE B2 3 179 -14 3 1337 23 0 0 0 chr9 98687391 98687414 -25388758 + AT_rich Low_complexity Low_complexity 1 23 0 3 1337 1349 280 21 16 chr9 98687430 98687859 -25388313 - L1M2 LINE L1 -1242 4901 4471 3 1337 446 279 45 0 chr9 98688364 98688475 -25387697 + PB1 SINE Alu 1 116 -11 3 1337 548 280 98 35 chr9 98688588 98688757 -25387415 + B4A SINE B4 50 229 -63 3 1337 630 202 73 0 chr9 98688757 98688881 -25387291 + RSINE1 SINE B4 2 134 -31 3 1337 237 98 0 163 chr9 98688908 98688957 -25387215 + B4A SINE B4 238 278 -14 3 1337 324 0 0 0 chr9 98689000 98689036 -25387136 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1337 302 261 204 0 chr9 98689074 98689162 -25387010 + PB1D7 SINE Alu 7 112 -8 3 1337 341 235 0 14 chr9 98689273 98689342 -25386830 + ID4_ SINE ID 3 70 -13 3 1337 546 16 0 0 chr9 98689437 98689500 -25386672 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1337 375 156 55 18 chr9 98689687 98689850 -25386322 + (CA)n Simple_repeat Simple_repeat 2 170 0 3 1337 339 149 58 29 chr9 98689930 98690103 -25386069 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1337 219 114 0 0 chr9 98690568 98690603 -25385569 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 1337 3678 116 40 22 chr9 98690604 98691184 -25384988 - MT2B LTR ERVL -10 591 2 3 1337 441 54 0 0 chr9 98691236 98691292 -25384880 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1337 288 0 0 0 chr9 98691303 98691335 -25384837 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1337 190 51 50 25 chr9 98691838 98691878 -25384294 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1337 320 288 99 14 chr9 98693404 98693634 -25382538 - HERV16-int LTR ERVL -2021 2975 2723 3 1337 1156 44 0 0 chr9 98693939 98694074 -25382098 + B1_Mus2 SINE Alu 2 136 -11 3 1337 381 22 0 0 chr9 98694074 98694120 -25382052 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 3 1337 284 361 88 71 chr9 98694483 98694665 -25381507 + ORR1E LTR MaLR 10 194 -165 3 1337 845 297 135 6 chr9 98694769 98695243 -25380929 + L1_Rod LINE L1 1469 2003 -3844 3 1337 2017 280 92 67 chr9 98695493 98696163 -25380009 + Lx8 LINE L1 6130 6852 -621 3 1337 671 62 71 0 chr9 98696163 98696275 -25379897 + L1_Mus3 LINE L1 6519 6638 0 3 1337 2017 280 92 67 chr9 98696275 98696435 -25379737 + Lx8 LINE L1 6853 6980 -493 3 1337 892 270 125 32 chr9 98696441 98696874 -25379298 + L1MA6 LINE L1 5798 6270 -30 3 1338 3065 73 10 2 chr9 98697284 98697681 -25378491 + MTB LTR MaLR 1 400 0 3 1338 280 309 38 4 chr9 98698532 98698644 -25377528 - MIRc SINE MIR -7 201 81 3 1338 486 0 0 0 chr9 98698723 98698777 -25377395 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1338 632 119 9 0 chr9 98699197 98699306 -25376866 + (TC)n Simple_repeat Simple_repeat 1 110 0 3 1338 27 0 0 0 chr9 98699826 98699853 -25376319 + AT_rich Low_complexity Low_complexity 1 27 0 3 1338 385 284 0 97 chr9 98701476 98701569 -25374603 + PB1D7 SINE Alu 18 101 -19 3 1338 864 198 103 10 chr9 98701569 98701763 -25374409 + B3 SINE B2 2 213 -3 3 1338 385 284 0 97 chr9 98701763 98701782 -25374390 + PB1D7 SINE Alu 102 119 -1 3 1338 390 289 118 52 chr9 98701785 98702055 -25374117 + B4 SINE B4 2 289 -3 3 1338 332 315 0 0 chr9 98702251 98702338 -25373834 + ID4 SINE ID 10 96 -56 3 1338 252 289 152 29 chr9 98702356 98702566 -25373606 + MIRb SINE MIR 2 237 -31 3 1338 256 328 45 15 chr9 98703023 98703158 -25373014 - MIR SINE MIR -134 142 1 3 1338 653 180 57 0 chr9 98703489 98703611 -25372561 + B1_Mur2 SINE Alu 21 149 0 3 1338 334 278 9 18 chr9 98704049 98704159 -25372013 - MIR SINE MIR -109 153 45 3 1338 324 120 0 0 chr9 98704240 98704290 -25371882 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 3 1338 219 234 157 70 chr9 98706377 98706492 -25369680 + MIRc SINE MIR 7 131 -137 3 1338 661 221 8 8 chr9 98706963 98707091 -25369081 - B3 SINE B2 -88 128 1 3 1338 329 300 108 9 chr9 98708483 98708594 -25367578 + MIRb SINE MIR 110 231 -37 3 1338 270 200 0 0 chr9 98709093 98709143 -25367029 - ID4 SINE ID -26 57 8 3 1338 396 0 0 0 chr9 98709974 98710018 -25366154 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1338 618 14 0 0 chr9 98710018 98710088 -25366084 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1338 432 67 0 0 chr9 98711111 98711171 -25365001 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 3 1338 715 135 32 0 chr9 98711425 98711581 -25364591 + (TAGA)n Simple_repeat Simple_repeat 2 162 0 3 1338 635 287 63 87 chr9 98714078 98714330 -25361842 + B4 SINE B4 36 281 -11 3 1338 234 62 0 0 chr9 98714334 98714366 -25361806 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1338 23 0 0 0 chr9 98714829 98714852 -25361320 + AT_rich Low_complexity Low_complexity 1 23 0 3 1338 6896 57 28 6 chr9 98715293 98716255 -25359917 - L1_Mus4 LINE L1 0 6636 5748 3 1338 191 336 61 34 chr9 98716983 98717131 -25359041 + L2a LINE L2 3223 3374 -52 3 1338 27 29 0 0 chr9 98717726 98717760 -25358412 + AT_rich Low_complexity Low_complexity 1 34 0 3 1338 563 302 11 60 chr9 98717787 98717970 -25358202 - B3A SINE B2 -16 182 9 3 1338 227 152 22 0 chr9 98718643 98718689 -25357483 + CT-rich Low_complexity Low_complexity 2 48 0 3 1338 281 269 134 49 chr9 98719055 98719219 -25356953 + MIRb SINE MIR 7 188 -80 3 1338 450 75 0 0 chr9 98719982 98720049 -25356123 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1338 315 333 74 106 chr9 98721874 98722213 -25353959 + ORR1D2 LTR MaLR 10 337 -33 3 1338 295 333 60 85 chr9 98722704 98722904 -25353268 - ORR1E LTR MaLR -162 197 3 3 1338 643 224 69 16 chr9 98723133 98723345 -25352827 + L1MA4 LINE L1 2920 3134 -3012 3 1338 1149 281 11 0 chr9 98723349 98723627 -25352545 + B4A SINE B4 12 292 0 3 1338 309 26 0 0 chr9 98723641 98723679 -25352493 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1338 907 301 106 5 chr9 98723681 98724265 -25351907 + L1MA4 LINE L1 3114 3756 -2387 3 1338 773 297 126 45 chr9 98724263 98724707 -25351465 + Lx8 LINE L1 6993 7472 -1 3 1338 1387 299 39 51 chr9 98724747 98725550 -25350622 + L1MA4 LINE L1 3815 4607 -1533 3 1338 375 148 0 0 chr9 98725552 98725633 -25350539 + Lx4A LINE L1 6978 7058 0 3 1338 262 230 40 13 chr9 98725639 98725714 -25350458 + L1MA4 LINE L1 5717 5793 -504 3 1338 536 178 14 14 chr9 98725714 98725862 -25350310 + (TA)n Simple_repeat Simple_repeat 1 148 0 3 1338 438 299 75 9 chr9 98725862 98726088 -25350084 + L1MA4 LINE L1 5782 6022 -278 3 1338 505 273 7 54 chr9 98726268 98726415 -25349757 + ID_B1 SINE B4 85 224 0 3 1338 368 40 20 0 chr9 98726415 98726465 -25349707 + (CATA)n Simple_repeat Simple_repeat 4 54 0 3 1338 182 206 15 0 chr9 98726583 98726651 -25349521 + GA-rich Low_complexity Low_complexity 2 70 0 3 1338 672 141 133 0 chr9 98726755 98726883 -25349289 + B1_Mur3 SINE Alu 5 149 0 3 1338 308 261 33 42 chr9 98726896 98727016 -25349156 + Lx8 LINE L1 7353 7471 -2 3 1338 319 276 105 37 chr9 98727638 98727800 -25348372 - MLT1A1 LTR MaLR 0 408 236 3 1338 247 333 79 8 chr9 98727879 98728006 -25348166 - MLT1A1 LTR MaLR -227 138 3 3 1338 468 0 0 0 chr9 98729125 98729177 -25346995 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1338 21 57 0 0 chr9 98729235 98729270 -25346902 + AT_rich Low_complexity Low_complexity 1 35 0 3 1338 25 0 0 0 chr9 98730873 98730898 -25345274 + AT_rich Low_complexity Low_complexity 1 25 0 3 1338 191 36 0 35 chr9 98730925 98730954 -25345218 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 3 1338 656 241 36 16 chr9 98730959 98731153 -25345019 + L1M4 LINE L1 5108 5305 -841 3 1338 375 132 0 68 chr9 98731154 98731227 -25344945 + PB1D9 SINE Alu 2 69 -51 3 1338 328 241 13 0 chr9 98731227 98731306 -25344866 + L1M4 LINE L1 5343 5422 -762 3 1338 381 257 20 54 chr9 98731308 98731456 -25344716 + ID_B1 SINE B4 82 224 0 3 1338 463 187 47 47 chr9 98731328 98731457 -25344715 + B1F SINE Alu 21 149 0 3 1338 470 325 74 14 chr9 98732045 98732366 -25343806 + LTR40a LTR ERVL 1 281 -181 3 1338 828 296 42 45 chr9 98732371 98732725 -25343447 - MTEa LTR MaLR -26 353 1 3 1338 268 287 43 17 chr9 98732870 98732987 -25343185 - Charlie5 DNA MER1_type -2504 120 1 3 1338 306 73 0 0 chr9 98733191 98733232 -25342940 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1338 324 0 0 0 chr9 98733232 98733267 -25342905 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 3 1338 1274 77 66 6 chr9 98734162 98734344 -25341828 + B2_Mm2 SINE B2 1 193 -2 3 1338 1449 66 11 11 chr9 98734372 98734557 -25341615 + B2_Mm2 SINE B2 2 186 -9 3 1338 781 186 4 8 chr9 98734636 98734871 -25341301 + GA-rich Low_complexity Low_complexity 1 234 0 3 1338 868 243 6 0 chr9 98734886 98735059 -25341113 + B3 SINE B2 1 174 -42 3 1338 895 169 0 13 chr9 98735107 98735257 -25340915 + B1_Mur1 SINE Alu 2 149 0 3 1338 924 221 24 10 chr9 98735558 98735764 -25340408 + Lx7 LINE L1 7146 7354 -342 3 1338 225 0 0 0 chr9 98735782 98735807 -25340365 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1338 189 154 0 0 chr9 98735906 98735945 -25340227 + CT-rich Low_complexity Low_complexity 3 41 0 3 1338 271 71 0 0 chr9 98735963 98736005 -25340167 - B1_Mm SINE Alu -6 141 100 3 1338 648 277 50 32 chr9 98736025 98736305 -25339867 + L1MC LINE L1 4540 4824 -1322 4 1338 489 213 76 53 chr9 98736336 98736593 -25339579 - MTD-int LTR MaLR -21 398 2 4 1338 1367 197 83 6 chr9 98736611 98736948 -25339224 - MTD LTR MaLR -16 403 41 4 1338 212 315 0 0 chr9 98737032 98737086 -25339086 - MIR SINE MIR -176 86 33 4 1338 493 228 0 0 chr9 98737114 98737215 -25338957 + B1_Mm SINE Alu 47 147 0 4 1338 21 0 0 0 chr9 98737523 98737544 -25338628 + AT_rich Low_complexity Low_complexity 1 21 0 4 1338 587 214 17 0 chr9 98737555 98737672 -25338500 + B1_Mur2 SINE Alu 31 149 0 4 1338 3556 151 50 17 chr9 98737825 98738466 -25337706 - RMER19B LTR ERVK -12 890 229 4 1338 366 23 0 0 chr9 98738469 98738512 -25337660 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 4 1338 233 182 18 0 chr9 98738597 98738652 -25337520 + GA-rich Low_complexity Low_complexity 2 57 0 4 1338 410 259 69 0 chr9 98740168 98740284 -25335888 + ID_B1 SINE B4 96 219 -5 4 1338 461 246 8 25 chr9 98740613 98740734 -25335438 - PB1D9 SINE Alu -1 119 1 4 1338 315 273 52 13 chr9 98741007 98741168 -25335004 - MIR SINE MIR -51 217 40 4 1338 1372 77 11 0 chr9 98744175 98744356 -25331816 + B2_Mm1a SINE B2 1 183 -10 4 1338 494 158 10 40 chr9 98744774 98744873 -25331299 - B1_Mur4 SINE Alu -8 142 47 4 1338 952 129 7 0 chr9 98744868 98745015 -25331157 - B2_Mm1t SINE B2 -44 149 2 4 1338 180 0 0 0 chr9 98745058 98745078 -25331094 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1338 396 0 0 0 chr9 98745114 98745158 -25331014 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1338 504 0 0 0 chr9 98745158 98745213 -25330959 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1338 738 284 6 33 chr9 98745226 98745408 -25330764 - B3 SINE B2 -30 186 10 4 1338 802 225 0 12 chr9 98745632 98745794 -25330378 - RSINE1 SINE B4 -4 161 2 4 1338 310 277 147 10 chr9 98745821 98745923 -25330249 - PB1D10 SINE Alu 0 117 2 4 1338 492 226 165 50 chr9 98746584 98746766 -25329406 + B3 SINE B2 1 203 -13 4 1338 399 186 202 9 chr9 98746862 98746976 -25329196 - MTD LTR MaLR -279 140 5 4 1338 247 356 52 9 chr9 98747445 98747561 -25328611 + B1F SINE Alu 3 123 -26 4 1338 1231 118 38 0 chr9 98748223 98748409 -25327763 + B2_Mm2 SINE B2 3 195 0 4 1338 818 162 49 7 chr9 98748729 98748872 -25327300 + B1_Mur4 SINE Alu 1 149 -1 4 1338 951 90 0 0 chr9 98750488 98750621 -25325551 + B1_Mus1 SINE Alu 15 147 -1 4 1338 374 290 166 0 chr9 98750727 98750896 -25325276 + MER89-int LTR ERV1 1119 1315 -5486 4 1338 783 233 5 31 chr9 98751280 98751475 -25324697 + B3A SINE B2 7 196 -2 4 1338 673 194 0 0 chr9 98751677 98751801 -25324371 + B1_Mur2 SINE Alu 18 141 -8 4 1338 1587 211 92 56 chr9 98751858 98752325 -25323847 - RMER19C LTR ERVK -2 609 126 4 1338 316 287 10 10 chr9 98752379 98752481 -25323691 + MER89-int LTR ERV1 2150 2251 -4550 4 1338 361 266 26 35 chr9 98752546 98752659 -25323513 + PB1D7 SINE Alu 2 113 -7 4 1338 615 223 31 25 chr9 98753034 98753062 -25323110 + ID_B1 SINE B4 63 223 0 4 1338 974 61 8 0 chr9 98753062 98753194 -25322978 + B1_Mm SINE Alu 15 147 0 4 1338 526 300 48 34 chr9 98753223 98753550 -25322622 - Lx8 LINE L1 -1593 6051 5714 4 1338 1440 281 19 8 chr9 98753553 98753915 -25322257 + MTE2a LTR MaLR 1 366 -13 4 1338 263 180 16 49 chr9 98753957 98754025 -25322147 - Lx8 LINE L1 -1929 5715 5622 4 1338 216 0 0 0 chr9 98754075 98754099 -25322073 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1338 184 313 0 0 chr9 98754447 98754514 -25321658 - L2 LINE L2 -2411 1008 942 4 1338 241 275 17 109 chr9 98754575 98754704 -25321468 + PB1 SINE Alu 10 125 -2 4 1338 360 268 0 0 chr9 98754809 98754891 -25321281 + ID4 SINE ID 1 82 -1 4 1338 201 149 20 41 chr9 98754897 98754946 -25321226 + GA-rich Low_complexity Low_complexity 4 51 0 4 1338 24 32 0 0 chr9 98755007 98755038 -25321134 + AT_rich Low_complexity Low_complexity 1 31 0 4 1338 216 0 0 0 chr9 98755133 98755157 -25321015 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1338 554 286 40 6 chr9 98755167 98755343 -25320829 + ID_B1 SINE B4 2 183 -41 4 1338 307 263 0 104 chr9 98755262 98755368 -25320804 + PB1D10 SINE Alu 22 116 -1 4 1338 24 53 0 0 chr9 98755411 98755449 -25320723 + AT_rich Low_complexity Low_complexity 1 38 0 4 1338 404 199 176 16 chr9 98755495 98755624 -25320548 - B1_Mur2 SINE Alu -9 141 1 4 1338 948 148 194 22 chr9 98755625 98755805 -25320367 - B3 SINE B2 -4 212 2 4 1338 273 163 0 0 chr9 98755808 98755857 -25320315 + T-rich Low_complexity Low_complexity 2 50 0 4 1338 312 215 12 12 chr9 98756262 98756342 -25319830 - B3 SINE B2 0 216 137 4 1338 42 0 0 0 chr9 98756401 98756443 -25319729 + AT_rich Low_complexity Low_complexity 1 42 0 4 1338 459 0 0 0 chr9 98756659 98756710 -25319462 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 4 1338 193 0 29 59 chr9 98758403 98758437 -25317735 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 4 1338 398 283 78 39 chr9 98758518 98758724 -25317448 - B3 SINE B2 0 216 3 4 1338 21 0 0 0 chr9 98758731 98758752 -25317420 + AT_rich Low_complexity Low_complexity 1 21 0 4 1338 941 128 44 55 chr9 98759203 98759385 -25316787 + B2_Mm2 SINE B2 2 181 -14 4 1338 1383 108 0 5 chr9 98759702 98759897 -25316275 - B2_Mm2 SINE B2 0 195 2 4 1338 995 199 46 5 chr9 98759901 98760098 -25316074 - B3 SINE B2 -5 211 7 4 1338 267 236 42 103 chr9 98760545 98760665 -25315507 - PB1D10 SINE Alu 0 117 9 4 1338 21 36 0 0 chr9 98760984 98761012 -25315160 + AT_rich Low_complexity Low_complexity 1 28 0 4 1338 212 303 44 29 chr9 98761043 98761111 -25315061 + ID4_ SINE ID 2 70 -13 4 1338 1891 236 66 45 chr9 98761656 98762274 -25313898 - Lx9 LINE L1 -159 7485 6855 4 1338 283 269 31 41 chr9 98762350 98762447 -25313725 + MER89-int LTR ERV1 1174 1269 -5532 4 1338 289 235 103 0 chr9 98762610 98762678 -25313494 + MER89-int LTR ERV1 1365 1439 -5362 4 1338 1939 292 66 11 chr9 98762692 98763315 -25312857 + Lx9 LINE L1 6386 7042 -602 4 1338 321 219 0 45 chr9 98763357 98763424 -25312748 + B1_Mur4 SINE Alu 1 64 -86 4 1338 238 286 12 49 chr9 98763424 98763435 -25312737 + B4A SINE B4 86 160 -132 4 1338 555 244 242 21 chr9 98763545 98763872 -25312300 + Lx9 LINE L1 7166 7564 -80 4 1338 696 239 30 24 chr9 98763962 98764129 -25312043 + B3 SINE B2 1 168 -48 4 1338 365 279 37 37 chr9 98764132 98764176 -25311996 + ID_B1 SINE B4 50 157 -67 4 1338 219 300 27 110 chr9 98764176 98764240 -25311932 + B1_Mm SINE Alu 12 77 -70 4 1338 1260 66 72 0 chr9 98764240 98764407 -25311765 + B2_Mm2 SINE B2 3 181 -14 4 1338 219 300 27 110 chr9 98764407 98764488 -25311684 + B1_Mm SINE Alu 78 145 -2 4 1338 607 215 27 40 chr9 98766652 98766802 -25309370 - B1_Mur2 SINE Alu -1 148 1 4 1338 21 0 0 0 chr9 98766969 98766990 -25309182 + AT_rich Low_complexity Low_complexity 1 21 0 4 1338 275 279 38 12 chr9 98767130 98767210 -25308962 - ID4 SINE ID 0 83 2 4 1338 355 292 33 8 chr9 98767226 98767347 -25308825 - B1F SINE Alu -5 144 21 4 1338 419 287 26 71 chr9 98767459 98767613 -25308559 - RSINE1 SINE B4 -17 148 2 4 1338 426 151 0 0 chr9 98767636 98767709 -25308463 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1338 400 194 75 0 chr9 98768435 98768528 -25307644 - PB1D10 SINE Alu 0 117 18 4 1338 3508 30 0 0 chr9 98768700 98769096 -25307076 - MTA_Mm LTR MaLR 0 396 1 4 1338 9622 23 1 1 chr9 98769096 98770194 -25305978 - MTA_Mm-int LTR MaLR 0 1098 1 4 1338 3489 30 0 0 chr9 98770194 98770590 -25305582 - MTA_Mm LTR MaLR 0 396 1 4 1338 731 217 177 31 chr9 98770701 98770974 -25305198 - ORR1E LTR MaLR 0 359 1 4 1338 950 149 0 13 chr9 98771121 98771271 -25304901 + B1_Mur4 SINE Alu 1 148 -2 4 1338 213 210 19 57 chr9 98771401 98771507 -25304665 + T-rich Low_complexity Low_complexity 2 103 0 4 1338 673 297 115 72 chr9 98772194 98772752 -25303420 - RLTR18 LTR ERVK -4 612 31 4 1338 215 194 43 79 chr9 98774350 98774399 -25301773 + T-rich Low_complexity Low_complexity 92 138 0 4 1338 369 0 0 0 chr9 98774399 98774440 -25301732 + (GGTTG)n Simple_repeat Simple_repeat 3 43 0 4 1338 215 194 43 79 chr9 98774440 98774455 -25301717 + T-rich Low_complexity Low_complexity 78 91 0 4 1338 180 0 0 0 chr9 98774455 98774475 -25301697 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1338 241 152 76 0 chr9 98774475 98774552 -25301620 + (GTTTG)n Simple_repeat Simple_repeat 1 82 0 4 1338 1940 257 35 57 chr9 98774921 98775519 -25300653 + Lx8 LINE L1 6550 7134 -339 4 1338 314 291 35 46 chr9 98775538 98775711 -25300461 + Lx8 LINE L1 7300 7470 -3 4 1338 494 285 137 16 chr9 98776386 98776568 -25299604 + ID_B1 SINE B4 1 204 -20 4 1338 441 0 0 0 chr9 98776576 98776625 -25299547 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1338 181 354 47 54 chr9 98776748 98777026 -25299146 - L2 LINE L2 -740 2679 2404 4 1338 618 254 0 14 chr9 98777902 98778042 -25298130 + B1_Mus1 SINE Alu 2 139 -9 4 1338 194 0 39 0 chr9 98778042 98778068 -25298104 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 4 1338 3278 200 85 49 chr9 98778091 98778922 -25297250 + RMER19B LTR ERVK 28 888 -14 4 1338 204 289 0 0 chr9 98778973 98779025 -25297147 + CT-rich Low_complexity Low_complexity 3 54 0 4 1338 361 252 126 0 chr9 98779259 98779370 -25296802 + ID_B1 SINE B4 83 207 -17 4 1338 302 254 0 0 chr9 98779969 98780036 -25296136 - RLTR4_MM-int LTR ERV1 -2740 5038 4972 4 1338 448 340 50 5 chr9 98780485 98780704 -25295468 - RLTR4_MM-int LTR ERV1 -3353 4248 4020 4 1338 313 260 43 68 chr9 98781358 98781519 -25294653 + RNLTR23 LTR ERVK 486 642 0 4 1338 739 353 40 30 chr9 98781579 98782257 -25293915 - MuRRS4-int LTR ERV1 -3339 1724 1040 4 1338 282 272 54 39 chr9 98782719 98782849 -25293323 - RMER12 LTR ERVK -90 1232 1101 4 1338 4567 111 25 39 chr9 98783091 98783913 -25292259 - RLTR22_Mus LTR ERVK -997 811 1 5 1338 189 107 0 0 chr9 98784709 98784737 -25291435 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1338 2327 189 99 43 chr9 98785322 98785859 -25290313 - RMER2 LTR ERV1 0 567 1 5 1338 956 188 18 44 chr9 98785869 98786097 -25290075 + URR1A DNA MER1_type 5 226 0 5 1338 401 278 8 16 chr9 98786321 98786449 -25289723 + MT2A LTR ERVL 3 129 -404 5 1338 267 319 16 41 chr9 98786479 98786600 -25289572 + ID_B1 SINE B4 106 223 -1 5 1338 277 298 64 0 chr9 98787369 98787463 -25288709 - B1F SINE Alu -23 126 27 5 1338 270 373 20 35 chr9 98787375 98787575 -25288597 - ID_B1 SINE B4 -26 198 2 5 1338 1038 88 0 0 chr9 98787652 98787789 -25288383 + B1_Mus1 SINE Alu 2 138 -10 5 1338 294 29 0 0 chr9 98787802 98787837 -25288335 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1338 360 0 0 0 chr9 98788123 98788163 -25288009 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1338 636 210 0 21 chr9 98790252 98790393 -25285779 + B1_Mus2 SINE Alu 9 146 -1 5 1338 2815 219 75 53 chr9 98790415 98791258 -25284914 + RMER19B LTR ERVK 15 875 -27 5 1338 787 115 85 33 chr9 98791293 98791446 -25284726 + ORR1A2 LTR MaLR 116 276 -51 5 1338 344 97 0 16 chr9 98791448 98791511 -25284661 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 5 1338 331 270 117 16 chr9 98791781 98791909 -25284263 + ID_B1 SINE B4 83 223 -1 5 1338 389 149 0 0 chr9 98792039 98792106 -25284066 - RMER2 LTR ERV1 -500 67 1 5 1338 1351 275 10 20 chr9 98792558 98792957 -25283215 - MuRRS4-int LTR ERV1 -1109 3954 3612 5 1338 273 29 0 0 chr9 98793259 98793293 -25282879 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1338 7323 74 20 2 chr9 98793405 98794619 -25281553 - L1_Mus1 LINE L1 -1 6566 5331 5 1338 409 280 143 38 chr9 98794634 98794927 -25281245 - RLTR4_MM-int LTR ERV1 -3190 4262 3978 5 1338 271 228 0 17 chr9 98795389 98795447 -25280725 - MuRRS4-int LTR ERV1 -2695 1995 1939 5 1338 588 246 30 30 chr9 98795995 98796204 -25279968 - MuRRS4-int LTR ERV1 -6147 1305 1040 5 1338 387 87 14 68 chr9 98797945 98798019 -25278153 - RMER2 LTR ERV1 -13 554 485 5 1338 9240 142 65 4 chr9 98798033 98800455 -25275717 - Lx LINE L1 -31 6623 4058 5 1338 2984 127 30 2 chr9 98800455 98800930 -25275242 - RMER2 LTR ERV1 -79 488 1 5 1338 1163 142 31 48 chr9 98800937 98801166 -25275006 + URR1A DNA MER1_type 2 226 0 5 1338 445 252 8 8 chr9 98801376 98801500 -25274672 + MT2A LTR ERVL 3 126 -407 5 1338 369 246 42 34 chr9 98801532 98801650 -25274522 + ID_B1 SINE B4 106 224 0 5 1338 210 162 0 0 chr9 98801650 98801687 -25274485 + A-rich Low_complexity Low_complexity 1 37 0 5 1338 207 0 0 0 chr9 98801730 98801753 -25274419 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1338 1106 78 0 0 chr9 98801757 98801898 -25274274 - B1_Mm SINE Alu -6 141 1 5 1338 291 266 64 0 chr9 98802657 98802751 -25273421 - B1F SINE Alu -23 126 27 5 1338 241 269 0 25 chr9 98802781 98802861 -25273311 - ID4 SINE ID -1 82 5 5 1338 366 115 0 0 chr9 98803214 98803275 -25272897 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1338 372 243 106 53 chr9 98805208 98805321 -25270851 + PB1D9 SINE Alu 2 120 0 5 1338 591 102 0 0 chr9 98805321 98805409 -25270763 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 1338 2987 219 104 15 chr9 98805410 98806225 -25269947 + RMER19B LTR ERVK 8 895 -7 5 1338 1021 62 8 0 chr9 98806526 98806656 -25269516 + B1_Mus2 SINE Alu 2 132 -15 5 1338 239 297 110 0 chr9 98806677 98806768 -25269404 + ID_B1 SINE B4 104 204 -20 5 1338 881 185 95 6 chr9 98806938 98807117 -25269055 + B2_Mm2 SINE B2 1 195 0 5 1338 520 164 47 19 chr9 98807141 98807247 -25268925 + B1_Mur3 SINE Alu 41 149 0 5 1338 1148 95 0 0 chr9 98807402 98807549 -25268623 + B1_Mus2 SINE Alu 1 147 0 5 1338 409 231 40 40 chr9 98807687 98807813 -25268359 + B1_Mur1 SINE Alu 5 130 -19 5 1338 344 205 52 4 chr9 98807824 98807923 -25268249 + L1MA7 LINE L1 6094 6196 -95 5 1338 805 122 46 20 chr9 98807926 98808077 -25268095 + RLTR14 LTR ERV1 1 155 -227 5 1338 783 198 129 21 chr9 98808083 98808368 -25267804 + RMER2 LTR ERV1 5 366 -201 5 1338 6332 150 33 10 chr9 98808536 98809579 -25266593 - Lx LINE L1 0 6654 5588 5 1338 221 270 0 53 chr9 98809595 98809689 -25266483 + B3A SINE B2 93 181 -17 5 1338 236 178 0 0 chr9 98809970 98810015 -25266157 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1338 289 285 121 96 chr9 98810472 98810506 -25265666 + B3 SINE B2 1 42 -174 5 1338 928 193 18 48 chr9 98810506 98810735 -25265437 + URR1A DNA MER1_type 5 226 0 5 1338 289 285 121 96 chr9 98810735 98810898 -25265274 + B3 SINE B2 43 203 -13 5 1338 1205 28 0 0 chr9 98811019 98811160 -25265012 - L1_Mm LINE L1 -559 5324 5184 5 1338 243 234 15 15 chr9 98811162 98811227 -25264945 + MT2A LTR ERVL 65 129 -404 5 1338 38195 50 1 4 chr9 98811237 98817221 -25258951 - L1Md_F3 LINE L1 -15 6569 609 5 1338 246 330 9 44 chr9 98817255 98817369 -25258803 + ID_B1 SINE B4 114 223 -1 5 1338 254 370 17 39 chr9 98818149 98818329 -25257843 - ID_B1 SINE B4 -26 198 23 5 1338 1046 88 0 0 chr9 98818427 98818563 -25257609 + B1_Mus1 SINE Alu 3 138 -10 5 1338 216 97 0 0 chr9 98818576 98818607 -25257565 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1338 423 0 0 0 chr9 98818891 98818938 -25257234 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1338 1627 201 103 0 chr9 98821294 98821633 -25254539 + ORR1C1 LTR MaLR 5 378 0 5 1338 507 95 0 0 chr9 98821991 98822065 -25254107 + (GAA)n Simple_repeat Simple_repeat 2 75 0 5 1338 234 0 0 0 chr9 98823149 98823175 -25252997 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1338 221 316 71 10 chr9 98823762 98823861 -25252311 - L2b LINE L2 -14 3361 3257 5 1338 238 374 17 9 chr9 98824153 98824269 -25251903 + MER117 DNA MER1_type 69 185 -12 5 1338 306 0 0 0 chr9 98824459 98824493 -25251679 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1338 240 35 0 0 chr9 98824929 98824958 -25251214 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1338 207 0 0 0 chr9 98824960 98824983 -25251189 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1338 1167 37 0 0 chr9 98824983 98825119 -25251053 - B1_Mm SINE Alu -10 137 2 5 1338 477 0 0 0 chr9 98825176 98825229 -25250943 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 5 1338 1098 87 0 0 chr9 98825229 98825367 -25250805 - B1_Mus2 SINE Alu -9 138 1 5 1338 698 206 0 0 chr9 98826139 98826265 -25249907 + B1_Mur1 SINE Alu 9 134 -15 5 1338 293 315 35 53 chr9 98826910 98827024 -25249148 + PB1D10 SINE Alu 6 117 0 5 1338 273 208 19 0 chr9 98827031 98827084 -25249088 + ID4 SINE ID 15 68 -15 5 1338 243 0 0 0 chr9 98827084 98827111 -25249061 + (TTAG)n Simple_repeat Simple_repeat 1 27 0 5 1338 384 22 0 0 chr9 98827111 98827155 -25249017 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1338 381 149 0 0 chr9 98827354 98827421 -25248751 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 5 1338 1221 27 0 20 chr9 98827421 98827572 -25248600 - B1_Mus1 SINE Alu 0 148 1 5 1338 233 346 39 0 chr9 98827819 98827923 -25248249 - MIRc SINE MIR -126 142 35 5 1339 26 0 0 0 chr9 98828924 98828950 -25247222 + AT_rich Low_complexity Low_complexity 1 26 0 5 1339 1031 130 12 0 chr9 98828974 98829143 -25247029 + URR1A DNA MER1_type 35 205 -21 5 1339 195 293 60 12 chr9 98829508 98829591 -25246581 - MER5B DNA MER1_type -53 125 39 5 1339 988 242 24 0 chr9 98830024 98830235 -25245937 - B3 SINE B2 0 216 1 5 1339 463 276 42 60 chr9 98830378 98830544 -25245628 + RSINE1 SINE B4 3 165 0 5 1339 548 271 99 127 chr9 98830894 98831186 -25244986 + ORR1E LTR MaLR 40 323 -47 5 1339 243 61 0 0 chr9 98831301 98831334 -25244838 + (G)n Simple_repeat Simple_repeat 1 33 0 5 1339 333 0 0 0 chr9 98832028 98832065 -25244107 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1339 339 78 0 0 chr9 98832190 98832241 -25243931 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1339 298 221 0 42 chr9 98832787 98832858 -25243314 + MIR SINE MIR 80 147 -115 5 1339 474 257 46 0 chr9 98833096 98833205 -25242967 - PB1D10 SINE Alu -2 115 2 5 1339 216 373 89 18 chr9 98834353 98834465 -25241707 + MIRb SINE MIR 96 215 -53 5 1339 259 325 26 0 chr9 98836546 98836623 -25239549 - MIR SINE MIR -81 181 103 5 1339 559 212 35 9 chr9 98836750 98836864 -25239308 + B4 SINE B4 118 234 -58 5 1339 368 267 129 29 chr9 98836863 98837002 -25239170 + RSINE1 SINE B4 8 160 -5 5 1339 312 284 11 69 chr9 98837029 98837116 -25239056 + B4 SINE B4 211 292 0 5 1339 243 303 21 82 chr9 98837054 98837151 -25239021 + B3A SINE B2 108 198 0 5 1339 277 287 94 45 chr9 98837450 98837601 -25238571 + L1ME2z LINE L1 5676 5834 -610 5 1339 450 0 0 0 chr9 98837601 98837651 -25238521 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1339 277 287 94 45 chr9 98837651 98837765 -25238407 + L1ME2z LINE L1 5835 5953 -491 5 1339 236 231 0 0 chr9 98837929 98837981 -25238191 + L1ME2z LINE L1 6171 6222 -222 5 1339 421 304 45 63 chr9 98838049 98838310 -25237862 + B4A SINE B4 39 274 -18 5 1339 441 0 0 0 chr9 98838311 98838360 -25237812 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1339 311 268 28 0 chr9 98838568 98838639 -25237533 + MIRc SINE MIR 38 110 -158 5 1339 405 39 0 0 chr9 98838801 98838852 -25237320 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1339 506 43 0 14 chr9 98838852 98838922 -25237250 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1339 317 238 338 24 chr9 98838962 98839169 -25237003 - B4A SINE B4 -19 273 2 6 1339 315 291 142 24 chr9 98839182 98839393 -25236779 + L1MA5 LINE L1 6065 6300 0 6 1339 216 0 0 0 chr9 98839463 98839487 -25236685 + (CTTA)n Simple_repeat Simple_repeat 4 27 0 6 1339 275 137 19 19 chr9 98839518 98839570 -25236602 + B3A SINE B2 11 62 -136 6 1339 217 148 16 32 chr9 98839580 98839643 -25236529 + T-rich Low_complexity Low_complexity 3 64 0 6 1339 625 177 11 201 chr9 98839651 98839835 -25236337 - B1_Mur4 SINE Alu -1 149 1 6 1339 506 249 49 132 chr9 98839835 98839951 -25236221 + B3A SINE B2 46 167 -31 6 1339 796 57 25 0 chr9 98839957 98840079 -25236093 + (TAGA)n Simple_repeat Simple_repeat 2 126 0 6 1339 24 0 0 0 chr9 98840082 98840106 -25236066 + AT_rich Low_complexity Low_complexity 1 24 0 6 1339 21 0 0 0 chr9 98840116 98840137 -25236035 + AT_rich Low_complexity Low_complexity 1 21 0 6 1339 1075 193 43 5 chr9 98840502 98840710 -25235462 + B3 SINE B2 1 216 0 6 1339 353 310 30 0 chr9 98840796 98840896 -25235276 + U6 snRNA snRNA 2 104 -3 6 1339 513 0 0 0 chr9 98840896 98840953 -25235219 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1339 472 240 76 9 chr9 98841094 98841199 -25234973 + PB1D10 SINE Alu 1 112 -5 6 1339 248 330 90 45 chr9 98841449 98841693 -25234479 + L1MEg LINE L1 1126 1380 -4704 6 1339 239 50 0 48 chr9 98842080 98842122 -25234050 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1339 474 271 136 20 chr9 98842251 98842398 -25233774 + RSINE1 SINE B4 2 165 0 6 1339 358 261 64 50 chr9 98842559 98842700 -25233472 - MLT1G LTR MaLR -439 152 10 6 1339 337 318 18 18 chr9 98842917 98843029 -25233143 - PB1D10 SINE Alu 0 117 6 6 1339 546 16 0 0 chr9 98843606 98843669 -25232503 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1339 428 289 72 28 chr9 98843690 98843853 -25232319 + MIRb SINE MIR 48 213 -55 6 1339 504 298 38 0 chr9 98844035 98844166 -25232006 - RCHARR1 DNA MER1_type -262 712 577 6 1339 545 240 93 31 chr9 98844172 98844301 -25231871 - B3 SINE B2 -76 140 4 6 1339 671 230 14 0 chr9 98844316 98844455 -25231717 - B1_Mur1 SINE Alu -8 141 1 6 1339 1025 235 171 106 chr9 98844465 98844522 -25231650 - RCHARR1 DNA MER1_type -451 523 477 6 1339 1388 70 21 21 chr9 98844522 98844712 -25231460 + B2_Mm2 SINE B2 1 190 -5 6 1339 1025 235 171 106 chr9 98844712 98844796 -25231376 - RCHARR1 DNA MER1_type -498 476 398 6 1339 986 214 23 28 chr9 98844796 98845012 -25231160 - B3 SINE B2 -1 215 1 6 1339 1025 235 171 106 chr9 98845012 98845360 -25230812 - RCHARR1 DNA MER1_type -577 397 1 6 1339 809 204 79 39 chr9 98845850 98846047 -25230125 + B3 SINE B2 9 214 -2 6 1339 848 138 13 27 chr9 98846054 98846203 -25229969 - B1_Mus1 SINE Alu 0 148 2 6 1339 866 96 20 27 chr9 98846393 98846543 -25229629 + L1_Mus3 LINE L1 6483 6631 -7 6 1339 422 307 121 35 chr9 98846572 98846710 -25229462 + B3 SINE B2 1 149 -67 6 1339 1353 61 0 0 chr9 98846710 98846890 -25229282 + (CATA)n Simple_repeat Simple_repeat 1 180 0 6 1339 422 307 121 35 chr9 98846890 98846950 -25229222 + B3 SINE B2 150 216 0 6 1339 273 311 37 62 chr9 98847057 98847218 -25228954 - L2c LINE L2 -50 3337 3181 6 1339 565 225 22 37 chr9 98847285 98847419 -25228753 + RSINE1 SINE B4 3 134 -31 6 1339 527 0 16 0 chr9 98847426 98847489 -25228683 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1339 391 248 31 8 chr9 98848283 98848413 -25227759 + L1MC5 LINE L1 7107 7239 -722 6 1339 189 0 0 0 chr9 98848421 98848442 -25227730 + (TAA)n Simple_repeat Simple_repeat 2 22 0 6 1339 273 273 32 45 chr9 98848472 98848629 -25227543 + L1MC5 LINE L1 7605 7759 -202 6 1339 524 305 64 2 chr9 98848629 98848852 -25227320 + ID_B1 SINE B4 55 282 -10 6 1339 39 0 0 0 chr9 98848922 98848961 -25227211 + AT_rich Low_complexity Low_complexity 1 39 0 6 1339 410 351 59 35 chr9 98848964 98849218 -25226954 - MIRb SINE MIR -1 267 8 6 1339 301 286 64 50 chr9 98849329 98849627 -25226545 + L1ME3B LINE L1 5678 5981 -259 6 1339 352 242 30 26 chr9 98849759 98849873 -25226299 + PB1D7 SINE Alu 1 106 -14 6 1339 227 323 78 18 chr9 98849957 98850124 -25226048 + L1MC LINE L1 5567 5743 -2139 6 1339 225 213 0 60 chr9 98850130 98850180 -25225992 - MTEa LTR MaLR 0 379 333 6 1339 682 241 72 6 chr9 98850183 98850350 -25225822 + B3A SINE B2 5 182 -16 6 1339 714 212 0 0 chr9 98850414 98850579 -25225593 + (TA)n Simple_repeat Simple_repeat 1 165 0 6 1339 899 271 101 24 chr9 98850579 98850867 -25225305 - MTEa LTR MaLR -69 310 1 6 1339 522 215 132 0 chr9 98851393 98851514 -25224658 + B1_Mur1 SINE Alu 13 149 0 6 1339 216 0 0 0 chr9 98851531 98851555 -25224617 + (CCA)n Simple_repeat Simple_repeat 2 25 0 6 1339 342 0 0 0 chr9 98853480 98853518 -25222654 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1339 227 133 22 0 chr9 98853682 98853727 -25222445 + GA-rich Low_complexity Low_complexity 2 47 0 6 1339 423 0 0 0 chr9 98854097 98854144 -25222028 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1339 183 80 0 0 chr9 98856916 98856941 -25219231 + (CCG)n Simple_repeat Simple_repeat 3 27 0 6 1339 23 78 0 0 chr9 98857052 98857103 -25219069 + GC_rich Low_complexity Low_complexity 1 51 0 6 1339 585 0 0 0 chr9 98861298 98861363 -25214809 + (TC)n Simple_repeat Simple_repeat 1 65 0 6 1339 267 31 0 0 chr9 98861844 98861876 -25214296 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 6 1339 211 125 0 24 chr9 98862569 98862610 -25213562 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1339 198 253 73 10 chr9 98864539 98864639 -25211533 - MIRb SINE MIR -56 212 100 6 1339 184 0 30 61 chr9 98865066 98865099 -25211073 + (CCCCCA)n Simple_repeat Simple_repeat 2 33 0 6 1339 414 39 0 0 chr9 98865918 98865970 -25210202 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1339 701 67 0 9 chr9 98866616 98866721 -25209451 + (TC)n Simple_repeat Simple_repeat 2 105 0 6 1339 546 186 0 0 chr9 98866738 98866883 -25209289 + CT-rich Low_complexity Low_complexity 2 146 0 6 1339 315 0 0 0 chr9 98866883 98866918 -25209254 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1339 254 107 200 67 chr9 98867057 98867117 -25209055 - PB1D10 SINE Alu -15 102 35 6 1339 1080 38 8 0 chr9 98867311 98867443 -25208729 + B1_Mus1 SINE Alu 16 148 0 6 1339 1020 130 0 0 chr9 98868229 98868889 -25207283 + (CA)n Simple_repeat Simple_repeat 1 660 0 6 1339 435 19 0 0 chr9 98868889 98868941 -25207231 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1339 243 0 0 0 chr9 98869071 98869098 -25207074 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1339 910 113 27 34 chr9 98869121 98869267 -25206905 + B1_Mus2 SINE Alu 3 147 0 6 1339 555 231 68 23 chr9 98869403 98869536 -25206636 - B1_Mur1 SINE Alu -2 147 9 6 1339 274 307 156 8 chr9 98869570 98869698 -25206474 + B1F1 SINE Alu 3 149 0 6 1339 216 67 0 0 chr9 98869747 98869777 -25206395 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1339 204 182 0 0 chr9 98869799 98869843 -25206329 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 6 1339 423 0 0 0 chr9 98869850 98869897 -25206275 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 1339 574 269 8 0 chr9 98869909 98870043 -25206129 - B1F SINE Alu -10 139 5 6 1339 396 0 0 0 chr9 98870264 98870308 -25205864 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1339 727 225 7 7 chr9 98870546 98870689 -25205483 + B1_Mur1 SINE Alu 1 143 -6 6 1339 418 338 29 7 chr9 98870712 98870849 -25205323 + B1F SINE Alu 10 149 0 6 1339 1551 168 119 68 chr9 98871183 98871535 -25204637 + ORR1D1 LTR MaLR 1 370 -4 6 1339 1278 175 0 5 chr9 98871780 98871992 -25204180 + B3 SINE B2 1 211 -5 6 1339 180 143 0 0 chr9 98872698 98872740 -25203432 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1339 531 31 0 0 chr9 98873010 98873075 -25203097 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1339 369 0 0 0 chr9 98873268 98873309 -25202863 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1339 468 0 0 0 chr9 98873309 98873360 -25202812 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1339 187 352 121 0 chr9 98873360 98873451 -25202721 + MER5A DNA MER1_type 88 189 0 6 1339 183 42 0 0 chr9 98874740 98874764 -25201408 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1339 225 0 0 0 chr9 98874932 98874957 -25201215 + (CTG)n Simple_repeat Simple_repeat 1 25 0 6 1339 258 32 0 0 chr9 98875301 98875332 -25200840 + (TTG)n Simple_repeat Simple_repeat 3 33 0 6 1339 420 174 153 0 chr9 98875746 98875844 -25200328 + B1F SINE Alu 31 143 -6 6 1339 434 214 45 12 chr9 98876245 98876342 -25199830 - PB1 SINE Alu -10 117 9 6 1339 798 41 0 0 chr9 98876353 98876451 -25199721 + (TTCTC)n Simple_repeat Simple_repeat 4 101 0 6 1339 753 76 0 0 chr9 98876451 98876556 -25199616 + (TCCC)n Simple_repeat Simple_repeat 4 108 0 6 1339 471 250 143 0 chr9 98876607 98876719 -25199453 - B1F2 SINE Alu -21 128 1 6 1339 180 238 0 0 chr9 98877216 98877279 -25198893 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1339 412 288 24 48 chr9 98878154 98878278 -25197894 + ID_B1 SINE B4 100 220 -4 6 1339 1451 69 11 0 chr9 98878903 98879062 -25197110 + B2_Mm1a SINE B2 2 160 -33 6 1339 414 0 0 0 chr9 98879062 98879108 -25197064 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 6 1339 1451 69 11 0 chr9 98879108 98879137 -25197035 + B2_Mm1a SINE B2 161 191 -2 6 1339 216 231 0 0 chr9 98879145 98879197 -25196975 + GA-rich Low_complexity Low_complexity 2 53 0 6 1339 861 79 86 16 chr9 98879317 98879445 -25196727 + B1_Mur4 SINE Alu 5 141 -9 6 1339 292 265 102 75 chr9 98880752 98880899 -25195273 - RSINE1 SINE B4 0 165 15 6 1339 905 104 0 31 chr9 98881005 98881134 -25195038 - B2_Mm2 SINE B2 -70 125 1 6 1339 604 229 67 34 chr9 98881218 98881367 -25194805 + RMER15 LTR ERVL 389 542 -33 6 1339 295 200 0 0 chr9 98881382 98881432 -25194740 - Lx8 LINE L1 -858 6615 6566 7 1339 352 279 29 0 chr9 98881642 98881746 -25194426 - PB1D10 SINE Alu -6 111 5 7 1339 294 219 229 0 chr9 98881857 98881962 -25194210 - Lx8 LINE L1 -450 7023 6895 7 1339 1355 63 28 17 chr9 98881963 98882142 -25194030 - B2_Mm2 SINE B2 -14 181 1 7 1339 561 281 30 54 chr9 98882245 98882448 -25193724 + RMER5 LTR ERV1 258 455 -79 7 1339 295 267 42 7 chr9 98882584 98882662 -25193510 - B1F2 SINE Alu -68 82 7 7 1339 214 296 54 43 chr9 98882714 98882806 -25193366 + B4A SINE B4 75 167 -125 7 1339 292 303 49 29 chr9 98882736 98882838 -25193334 + PB1D7 SINE Alu 11 114 -6 7 1339 344 352 57 14 chr9 98882898 98883039 -25193133 + B1F1 SINE Alu 3 149 0 7 1339 232 167 0 0 chr9 98883171 98883219 -25192953 + T-rich Low_complexity Low_complexity 1 48 0 7 1339 264 312 9 60 chr9 98883876 98883992 -25192180 + RMER15 LTR ERVL 452 561 -14 7 1339 513 358 44 41 chr9 98884230 98884498 -25191674 - MLT1C LTR MaLR -6 461 193 7 1339 694 296 71 101 chr9 98884498 98884691 -25191481 + MLT1B LTR MaLR 1 193 -197 7 1339 215 61 30 0 chr9 98884691 98884724 -25191448 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1339 528 65 0 0 chr9 98884724 98884801 -25191371 + (GA)n Simple_repeat Simple_repeat 1 77 0 7 1339 694 296 71 101 chr9 98884801 98884971 -25191201 + MLT1B LTR MaLR 194 353 -37 7 1339 286 295 0 16 chr9 98884985 98885047 -25191125 - MER2 DNA MER2_type -7 338 278 7 1339 235 265 0 0 chr9 98885072 98885121 -25191051 + ID4_ SINE ID 35 83 0 7 1339 493 234 133 28 chr9 98885120 98885300 -25190872 - MER2 DNA MER2_type -54 291 93 7 1339 465 283 0 0 chr9 98885786 98885867 -25190305 - PB1D10 SINE Alu -1 116 36 7 1339 285 266 60 68 chr9 98885867 98885984 -25190188 + PB1D10 SINE Alu 2 117 0 7 1339 576 222 157 48 chr9 98888624 98888838 -25187334 + B3A SINE B2 1 215 -1 7 1339 205 182 0 0 chr9 98889063 98889107 -25187065 + T-rich Low_complexity Low_complexity 2 45 0 7 1339 840 208 0 0 chr9 98889260 98889404 -25186768 - B1_Mur4 SINE Alu 0 150 7 7 1339 21 0 0 0 chr9 98889449 98889470 -25186702 + AT_rich Low_complexity Low_complexity 1 21 0 7 1339 953 172 0 0 chr9 98889477 98889622 -25186550 - B1_Mur2 SINE Alu 0 149 5 7 1339 351 65 0 0 chr9 98889711 98889757 -25186415 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1339 692 253 6 6 chr9 98889762 98889921 -25186251 - B3A SINE B2 -39 159 1 7 1339 911 89 49 0 chr9 98890954 98891077 -25185095 + B1_Mus1 SINE Alu 2 130 -18 7 1339 332 75 24 48 chr9 98892404 98892488 -25183684 + (TTTTTG)n Simple_repeat Simple_repeat 3 84 0 7 1339 822 160 40 27 chr9 98893523 98893671 -25182501 + B1_Mur4 SINE Alu 1 150 0 7 1339 355 258 93 0 chr9 98893986 98894083 -25182089 + PB1D7 SINE Alu 1 106 -14 7 1339 1322 257 139 17 chr9 98894306 98894354 -25181818 - MT2A LTR ERVL 0 533 486 7 1339 423 0 0 0 chr9 98894354 98894401 -25181771 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1339 1322 257 139 17 chr9 98894401 98894827 -25181345 - MT2A LTR ERVL -48 485 3 7 1339 270 327 100 28 chr9 98894828 98895149 -25181023 - L1MC5 LINE L1 -737 7224 6881 7 1339 397 291 22 7 chr9 98895180 98895315 -25180857 - B1F1 SINE Alu -1 148 12 7 1339 258 235 19 114 chr9 98895341 98895458 -25180714 - L1MC5 LINE L1 -1075 6967 6779 7 1339 246 62 0 0 chr9 98895598 98895630 -25180542 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 7 1339 592 140 30 0 chr9 98895709 98895809 -25180363 - B1F2 SINE Alu 0 149 47 7 1339 258 32 0 0 chr9 98895947 98895978 -25180194 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1339 385 108 0 5 chr9 98895993 98896055 -25180117 - B2_Mm2 SINE B2 -107 109 50 7 1339 1311 94 0 22 chr9 98896069 98896253 -25179919 - B2_Mm2 SINE B2 -14 181 2 7 1339 250 224 34 17 chr9 98896501 98896560 -25179612 - L1M7 LINE L1 -4584 1634 1575 7 1339 269 248 17 95 chr9 98896669 98896785 -25179387 + MTEa LTR MaLR 236 342 -37 7 1339 203 0 0 36 chr9 98897086 98897114 -25179058 + (CTTA)n Simple_repeat Simple_repeat 2 28 0 7 1339 847 162 28 14 chr9 98897114 98897258 -25178914 - B1_Mur4 SINE Alu -3 147 2 7 1339 954 215 55 0 chr9 98897355 98897555 -25178617 - B3 SINE B2 -5 211 1 7 1339 892 147 7 0 chr9 98898030 98898173 -25177999 + URR1A DNA MER1_type 79 222 -4 7 1339 330 45 0 0 chr9 98899645 98899689 -25176483 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1339 1054 209 19 10 chr9 98899689 98899897 -25176275 + B3 SINE B2 4 213 -3 7 1339 831 171 43 0 chr9 98899923 98900063 -25176109 - B1_Mur3 SINE Alu 0 149 4 7 1339 249 284 40 0 chr9 98900117 98900191 -25175981 + ID4 SINE ID 4 80 -3 7 1339 241 319 49 56 chr9 98900905 98901048 -25175124 - Charlie5 DNA MER1_type -1 2623 2482 7 1339 1438 64 16 0 chr9 98901053 98901241 -25174931 + B2_Mm1a SINE B2 2 192 -1 7 1339 566 183 23 122 chr9 98901255 98901386 -25174786 + B1_Mur2 SINE Alu 8 125 -24 7 1339 247 286 51 100 chr9 98901418 98901593 -25174579 + MIR SINE MIR 48 213 -55 7 1339 418 117 0 0 chr9 98901805 98901865 -25174307 - B3 SINE B2 -87 129 70 7 1339 1022 251 5 0 chr9 98902588 98902803 -25173369 + B3 SINE B2 1 216 0 7 1339 917 94 16 0 chr9 98902808 98902936 -25173236 + B1_Mus1 SINE Alu 19 148 0 7 1339 319 331 128 60 chr9 98902939 98903190 -25172982 + L1ME3A LINE L1 5878 6145 -28 7 1339 331 192 41 0 chr9 98903225 98903298 -25172874 + ID4 SINE ID 1 76 -7 7 1339 241 294 59 0 chr9 98903462 98903530 -25172642 + MTEa LTR MaLR 290 361 -18 7 1339 24 0 0 0 chr9 98903784 98903808 -25172364 + AT_rich Low_complexity Low_complexity 1 24 0 7 1339 1801 264 114 51 chr9 98905016 98905413 -25170759 + L1_Mur3 LINE L1 1214 1612 -4268 7 1339 360 0 0 0 chr9 98905413 98905453 -25170719 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 7 1339 1801 264 114 51 chr9 98905453 98906077 -25170095 + L1_Mur3 LINE L1 1613 2300 -3580 7 1339 231 61 0 0 chr9 98906238 98906271 -25169901 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1339 300 348 0 0 chr9 98906282 98906351 -25169821 - B3A SINE B2 -50 148 80 7 1339 382 269 85 25 chr9 98906367 98906485 -25169687 + B4A SINE B4 168 292 0 7 1339 2397 129 124 19 chr9 98906520 98906939 -25169233 - RMER4A LTR ERVK -3 463 1 7 1339 316 239 94 0 chr9 98907605 98907697 -25168475 + PB1D9 SINE Alu 16 117 -3 7 1339 677 250 92 20 chr9 98907730 98907926 -25168246 + B3 SINE B2 1 210 -6 7 1339 428 286 61 0 chr9 98907976 98908123 -25168049 + RSINE1 SINE B4 2 157 -8 7 1339 252 262 16 0 chr9 98909462 98909523 -25166649 + ID2 SINE ID 20 81 -2 7 1339 508 284 65 20 chr9 98909891 98910092 -25166080 + B3 SINE B2 2 211 -5 7 1339 671 316 16 37 chr9 98910206 98910452 -25165720 + B4A SINE B4 52 292 0 7 1339 438 20 0 0 chr9 98910502 98910553 -25165619 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 7 1339 374 321 116 30 chr9 98910674 98910873 -25165299 - B3 SINE B2 0 216 1 7 1339 531 0 0 0 chr9 98911552 98911611 -25164561 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 1339 626 239 28 42 chr9 98911971 98912115 -25164057 - B3 SINE B2 -72 144 3 7 1339 317 321 0 47 chr9 98912259 98912327 -25163845 + RSINE1 SINE B4 83 149 -16 7 1339 908 114 24 0 chr9 98912327 98912494 -25163678 + (CA)n Simple_repeat Simple_repeat 2 172 0 7 1339 317 321 0 47 chr9 98912494 98912510 -25163662 + RSINE1 SINE B4 150 163 -2 7 1339 216 158 0 0 chr9 98912522 98912560 -25163612 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1339 196 331 38 76 chr9 98912707 98912864 -25163308 - MIR3 SINE MIR -39 169 19 7 1339 535 259 57 38 chr9 98913445 98913654 -25162518 + Lx8 LINE L1 7101 7313 -160 7 1339 198 191 0 0 chr9 98913659 98913701 -25162471 + GA-rich Low_complexity Low_complexity 5 46 0 7 1339 666 252 0 0 chr9 98913807 98913942 -25162230 + B1_Mur1 SINE Alu 8 142 -7 7 1339 955 147 181 0 chr9 98913947 98914124 -25162048 + B3 SINE B2 3 211 -5 7 1339 238 213 75 62 chr9 98914259 98914339 -25161833 + ID2 SINE ID 2 82 -1 7 1339 2281 137 60 0 chr9 98914740 98915104 -25161068 + ORR1B1 LTR MaLR 1 386 -8 7 1339 423 256 165 30 chr9 98915126 98915365 -25160807 - B4A SINE B4 -22 270 2 7 1339 545 233 0 33 chr9 98915643 98915794 -25160378 - B1F SINE Alu -2 147 2 7 1339 287 303 19 66 chr9 98915935 98916041 -25160131 + PB1 SINE Alu 2 102 -25 7 1339 549 0 0 0 chr9 98916555 98916616 -25159556 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 1339 937 259 122 28 chr9 98917240 98917526 -25158646 - ORR1D2 LTR MaLR 0 370 58 7 1339 306 0 0 0 chr9 98917554 98917588 -25158584 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1339 324 333 93 14 chr9 98917780 98917920 -25158252 + RSINE1 SINE B4 15 165 0 7 1339 588 222 0 0 chr9 98917934 98918114 -25158058 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1339 286 203 29 0 chr9 98918603 98918672 -25157500 + ID2 SINE ID 2 72 -11 7 1339 568 128 0 27 chr9 98919128 98919240 -25156932 + GA-rich Low_complexity Low_complexity 3 111 0 7 1339 375 295 128 8 chr9 98919575 98919708 -25156464 + B1F1 SINE Alu 1 149 0 7 1339 982 238 44 0 chr9 98919727 98919933 -25156239 + B3 SINE B2 2 216 0 7 1339 599 313 5 47 chr9 98921091 98921282 -25154890 + B3A SINE B2 3 185 -13 7 1339 315 0 0 0 chr9 98921358 98921393 -25154779 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1339 404 308 149 57 chr9 98921397 98921469 -25154703 - B4A SINE B4 -10 282 212 8 1339 2208 161 36 19 chr9 98921469 98921882 -25154290 - MTC LTR MaLR -1 420 1 8 1339 404 308 149 57 chr9 98921882 98922057 -25154115 - B4A SINE B4 -81 211 12 8 1339 207 100 0 0 chr9 98922127 98922157 -25154015 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 8 1339 2032 92 8 131 chr9 98922269 98922643 -25153529 + ORR1A4 LTR MaLR 1 328 -1 8 1339 436 262 55 34 chr9 98922715 98922861 -25153311 - B1F SINE Alu 0 149 1 8 1339 342 0 0 0 chr9 98923177 98923215 -25152957 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1339 1401 86 21 0 chr9 98923276 98923462 -25152710 - B2_Mm2 SINE B2 -5 190 1 8 1339 441 0 0 0 chr9 98923834 98923883 -25152289 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 1339 966 108 17 6 chr9 98924489 98924666 -25151506 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 8 1339 1023 140 6 6 chr9 98924680 98924845 -25151327 - ORR1D1 LTR MaLR -209 165 1 8 1339 551 256 0 33 chr9 98924890 98925011 -25151161 + B1_Mur2 SINE Alu 1 117 -32 8 1339 2379 180 61 70 chr9 98925755 98926294 -25149878 + RLTR20B1 LTR ERVK 15 548 -15 8 1339 342 137 179 13 chr9 98926569 98926681 -25149491 - B2_Mm2 SINE B2 -1 194 43 8 1339 390 296 20 20 chr9 98926718 98926869 -25149303 + RLTR20B1 LTR ERVK 410 560 0 8 1339 1096 89 0 0 chr9 98926869 98927015 -25149157 - B2_Mm2 SINE B2 -48 147 2 8 1339 616 276 14 0 chr9 98927186 98927331 -25148841 + RSINE1 SINE B4 3 149 -16 8 1339 369 0 0 0 chr9 98927337 98927378 -25148794 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1339 390 252 268 0 chr9 98927666 98927793 -25148379 + ID_B1 SINE B4 3 163 -61 8 1339 628 100 17 0 chr9 98927937 98928057 -25148115 + (TC)n Simple_repeat Simple_repeat 1 122 0 8 1339 1009 127 0 0 chr9 98928059 98928201 -25147971 - B1_Mur4 SINE Alu -6 144 3 8 1339 313 294 104 17 chr9 98928247 98928295 -25147877 + L1MC1 LINE L1 5968 6015 -318 8 1339 2216 219 42 93 chr9 98928295 98928939 -25147233 + RMER19C LTR ERVK 1 611 0 8 1339 313 294 104 17 chr9 98928939 98929063 -25147109 + L1MC1 LINE L1 6016 6154 -179 8 1339 364 243 39 10 chr9 98929095 98929199 -25146973 + L1MC1 LINE L1 6224 6330 -3 8 1339 706 203 35 7 chr9 98930081 98930225 -25145947 + B1_Mur4 SINE Alu 3 150 0 8 1339 1031 214 23 32 chr9 98930239 98930456 -25145716 - B3 SINE B2 0 216 2 8 1339 21 0 0 0 chr9 98930500 98930521 -25145651 + AT_rich Low_complexity Low_complexity 1 21 0 8 1339 323 281 61 0 chr9 98930682 98930764 -25145408 - ID_B1 SINE B4 0 224 138 8 1339 2637 142 179 12 chr9 98930833 98931326 -25144846 + RMER15 LTR ERVL 1 575 0 8 1339 533 277 132 114 chr9 98931358 98931745 -25144427 + RMER5 LTR ERV1 15 408 -126 8 1339 473 222 73 9 chr9 98933353 98933462 -25142710 - PB1D7 SINE Alu 0 120 5 8 1339 842 176 227 0 chr9 98934113 98934289 -25141883 + B3 SINE B2 1 216 0 8 1339 241 135 19 19 chr9 98934304 98934327 -25141845 + polypurine Low_complexity Low_complexity 1 23 0 8 1339 233 242 106 0 chr9 98934327 98934393 -25141779 + ID4_ SINE ID 2 74 -9 8 1339 241 135 19 19 chr9 98934393 98934422 -25141750 + polypurine Low_complexity Low_complexity 24 53 0 8 1339 309 286 39 0 chr9 98935250 98935327 -25140845 - PB1D10 SINE Alu -26 91 12 8 1339 411 63 0 87 chr9 98936876 98936892 -25139280 + B1_Mur4 SINE Alu 87 99 -51 8 1339 255 31 0 0 chr9 98936892 98936924 -25139248 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1339 411 63 0 87 chr9 98936924 98936976 -25139196 + B1_Mur4 SINE Alu 100 149 -1 8 1339 1224 147 195 16 chr9 98937600 98937856 -25138316 - MTC LTR MaLR -49 372 71 8 1339 243 78 39 19 chr9 98939505 98939557 -25136615 + (TA)n Simple_repeat Simple_repeat 2 54 0 8 1339 328 179 112 147 chr9 98940853 98941023 -25135149 - RSINE1 SINE B4 0 165 2 8 1339 411 83 0 0 chr9 98941044 98941104 -25135068 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1339 801 156 21 28 chr9 98941117 98941262 -25134910 - B1_Mus1 SINE Alu -4 144 1 8 1339 401 279 153 7 chr9 98942060 98942197 -25133975 - RSINE1 SINE B4 -7 158 2 8 1339 744 270 162 6 chr9 98942548 98942876 -25133296 + MTE2b LTR MaLR 1 379 0 8 1339 748 207 20 7 chr9 98943539 98943685 -25132487 + B1_Mur2 SINE Alu 2 149 0 8 1339 231 213 145 16 chr9 98943696 98943758 -25132414 + RSINE1 SINE B4 1 70 -95 8 1339 25 0 0 0 chr9 98944023 98944048 -25132124 + AT_rich Low_complexity Low_complexity 1 25 0 8 1339 180 0 0 0 chr9 98944329 98944349 -25131823 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1339 352 215 17 86 chr9 98944398 98944515 -25131657 + B3 SINE B2 104 212 -4 8 1339 905 219 5 29 chr9 98944589 98944796 -25131376 - B3 SINE B2 0 216 15 8 1339 251 243 52 0 chr9 98944842 98944908 -25131264 - B1F SINE Alu -71 78 10 8 1339 453 278 20 27 chr9 98945594 98945742 -25130430 - B1F SINE Alu 0 149 3 8 1339 377 301 106 0 chr9 98946140 98946263 -25129909 - ID_B1 SINE B4 -87 137 2 8 1339 750 235 26 26 chr9 98946343 98946535 -25129637 + B3A SINE B2 2 193 -5 8 1339 282 256 157 0 chr9 98946545 98946666 -25129506 + B1_Mus2 SINE Alu 2 141 -6 8 1339 475 70 0 0 chr9 98947444 98947515 -25128657 - B1_Mus2 SINE Alu -6 141 71 8 1339 556 165 130 0 chr9 98947516 98947631 -25128541 - B1_Mur4 SINE Alu -20 130 1 8 1339 471 296 34 20 chr9 98947680 98947828 -25128344 + RSINE1 SINE B4 8 157 -8 8 1339 328 194 15 0 chr9 98948066 98948133 -25128039 + ID_B1 SINE B4 155 222 -2 8 1339 579 197 28 49 chr9 98948313 98948457 -25127715 + B3A SINE B2 36 176 -22 8 1339 697 259 181 13 chr9 98948513 98948740 -25127432 + B4A SINE B4 6 270 -22 8 1339 219 284 0 0 chr9 98948767 98948840 -25127332 + B1_Mur1 SINE Alu 60 130 -17 8 1339 252 0 0 0 chr9 98949499 98949527 -25126645 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 8 1339 316 169 139 35 chr9 98949886 98949972 -25126200 + B1_Mur2 SINE Alu 39 133 -16 8 1339 304 227 55 33 chr9 98950782 98950873 -25125299 - RSINE1 SINE B4 -71 94 2 8 1339 230 200 0 0 chr9 98950873 98950914 -25125258 + MTEa LTR MaLR 325 365 -14 8 1339 197 178 22 0 chr9 98950945 98950990 -25125182 + GA-rich Low_complexity Low_complexity 3 48 0 8 1339 2093 209 23 92 chr9 98951086 98951704 -25124468 + Lx7 LINE L1 7122 7696 0 8 1339 382 269 70 102 chr9 98951873 98952030 -25124142 + RSINE1 SINE B4 12 163 -2 8 1339 457 300 0 15 chr9 98952350 98952482 -25123690 + ID_B1 SINE B4 86 215 -9 8 1339 289 316 32 0 chr9 98953167 98953262 -25122910 + PB1D9 SINE Alu 21 118 -2 8 1339 486 263 9 17 chr9 98953296 98953412 -25122760 + ID_B1 SINE B4 89 203 -21 8 1339 3813 38 0 2 chr9 98953482 98953934 -25122238 - L1Md_F2 LINE L1 -8 6574 6124 8 1339 474 230 230 0 chr9 98954824 98954976 -25121196 - B3A SINE B2 -10 188 2 8 1339 544 209 93 0 chr9 98955178 98955307 -25120865 + B1F SINE Alu 1 141 -8 8 1339 601 240 76 6 chr9 98955317 98955489 -25120683 + B3A SINE B2 5 188 -10 8 1339 1265 102 11 0 chr9 98956087 98956263 -25119909 + B2_Mm1t SINE B2 2 179 -14 8 1339 464 73 319 26 chr9 98956281 98956394 -25119778 + B2_Mm2 SINE B2 48 193 -2 8 1339 771 175 14 74 chr9 98956935 98957083 -25119089 + B1_Mur3 SINE Alu 1 139 -10 8 1339 1170 120 16 11 chr9 98957122 98957308 -25118864 + B2_Mm2 SINE B2 2 188 -7 8 1339 754 237 50 30 chr9 98957319 98957519 -25118653 - B3 SINE B2 -5 211 8 8 1339 590 110 22 0 chr9 98957701 98957792 -25118380 + B1_Mur1 SINE Alu 46 138 -11 8 1339 413 307 0 1 chr9 98957836 98957956 -25118216 + B1_Mur1 SINE Alu 12 130 -19 8 1339 261 304 174 0 chr9 98958645 98958760 -25117412 + RSINE1 SINE B4 3 137 -28 8 1339 273 129 0 0 chr9 98958855 98958910 -25117262 + B1F SINE Alu 52 138 -11 8 1339 652 265 60 0 chr9 98958957 98959108 -25117064 + B3A SINE B2 1 160 -38 8 1340 213 292 111 0 chr9 98959730 98959802 -25116370 + PB1D10 SINE Alu 1 80 -37 8 1340 535 266 55 40 chr9 98960275 98960475 -25115697 + ID_B1 SINE B4 4 206 -18 8 1340 320 284 105 26 chr9 98961066 98961218 -25114954 - RSINE1 SINE B4 0 165 2 8 1340 828 165 208 11 chr9 98961570 98961748 -25114424 + B3 SINE B2 2 214 -2 8 1340 22 56 0 0 chr9 98961844 98961880 -25114292 + AT_rich Low_complexity Low_complexity 1 36 0 8 1340 382 36 18 18 chr9 98962492 98962549 -25113623 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1340 230 224 0 82 chr9 98962817 98962890 -25113282 + B1F1 SINE Alu 43 109 -40 8 1340 425 19 0 18 chr9 98963723 98963778 -25112394 + (TATG)n Simple_repeat Simple_repeat 4 57 0 8 1340 739 188 7 14 chr9 98963778 98963918 -25112254 - B1_Mus2 SINE Alu -4 143 5 8 1340 351 0 0 0 chr9 98964323 98964362 -25111810 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1340 305 111 302 0 chr9 98964908 98964971 -25111201 - B1_Mus1 SINE Alu -49 99 18 8 1340 210 274 0 0 chr9 98964964 98965015 -25111157 - RSINE1 SINE B4 -113 52 2 8 1340 226 167 0 0 chr9 98965205 98965247 -25110925 - RLTR31_Mur LTR ERVK 0 553 512 8 1340 608 262 83 45 chr9 98965426 98965690 -25110482 - RLTR17 LTR ERVK -263 429 156 8 1340 575 239 49 0 chr9 98966335 98966477 -25109695 + B3 SINE B2 67 215 -1 9 1340 3527 201 53 122 chr9 98966668 98967685 -25108487 + RMER1B Other Other 1 936 -130 9 1340 189 74 0 0 chr9 98967685 98967712 -25108460 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1340 3527 201 53 122 chr9 98967712 98967835 -25108337 + RMER1B Other Other 937 1062 -4 9 1340 223 282 0 90 chr9 98967886 98967964 -25108208 + ID4 SINE ID 2 72 -11 9 1340 340 232 0 0 chr9 98968678 98968747 -25107425 - ID4_ SINE ID -13 70 2 9 1340 328 352 0 0 chr9 98968768 98968876 -25107296 - PB1D10 SINE Alu -8 109 2 9 1340 910 146 28 0 chr9 98968885 98969029 -25107143 - B1_Mus1 SINE Alu 0 148 1 9 1340 837 54 132 0 chr9 98969420 98969549 -25106623 + B2_Mm2 SINE B2 1 146 -49 9 1340 405 54 0 0 chr9 98969549 98969605 -25106567 + (CATA)n Simple_repeat Simple_repeat 1 56 0 9 1340 554 227 171 28 chr9 98969680 98969861 -25106311 + B3 SINE B2 1 207 -9 9 1340 289 262 55 55 chr9 98970126 98970235 -25105937 + ID_B1 SINE B4 84 192 -32 9 1340 252 234 18 170 chr9 98970235 98970290 -25105882 + FAM SINE Alu 138 276 -35 9 1340 253 182 29 57 chr9 98971158 98971263 -25104909 + (CATATA)n Simple_repeat Simple_repeat 5 106 0 9 1340 704 196 43 14 chr9 98971322 98971462 -25104710 + B1_Mur1 SINE Alu 6 149 0 9 1340 604 119 172 60 chr9 98971601 98971735 -25104437 + B1_Mur4 SINE Alu 1 149 -1 9 1340 351 278 113 0 chr9 98972234 98972349 -25103823 + B1F SINE Alu 9 136 -13 9 1340 189 0 0 0 chr9 98972498 98972519 -25103653 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1340 698 259 18 0 chr9 98972527 98972697 -25103475 + ID_B1 SINE B4 26 198 -26 9 1340 255 173 0 0 chr9 98972724 98972776 -25103396 + (TA)n Simple_repeat Simple_repeat 2 53 0 9 1340 285 197 62 62 chr9 98972990 98973071 -25103101 + ID_B1 SINE B4 131 211 -13 9 1340 216 254 0 0 chr9 98973076 98973131 -25103041 + GA-rich Low_complexity Low_complexity 3 57 0 9 1340 288 265 71 10 chr9 98973299 98973398 -25102774 + PB1D9 SINE Alu 10 114 -6 9 1340 456 77 0 0 chr9 98973409 98973474 -25102698 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1340 381 220 9 48 chr9 98973685 98973790 -25102382 + B1F SINE Alu 12 112 -37 9 1340 319 254 14 0 chr9 98974824 98974895 -25101277 + ID SINE ID 5 76 -148 9 1340 316 306 52 52 chr9 98975058 98975213 -25100959 - B4A SINE B4 0 292 138 9 1340 473 157 118 18 chr9 98975320 98975430 -25100742 + B1_Mur4 SINE Alu 30 150 0 9 1340 1171 50 0 0 chr9 98975434 98975574 -25100598 + B1_Mus1 SINE Alu 1 140 -8 9 1340 216 86 0 0 chr9 98975574 98975609 -25100563 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1340 2072 189 34 42 chr9 98975850 98976326 -25099846 + RLTR12B LTR ERVK 26 497 -31 9 1340 776 225 0 0 chr9 98976940 98977082 -25099090 + B1_Mur1 SINE Alu 2 143 -6 9 1340 817 98 96 89 chr9 98977111 98977257 -25098915 + B1_Mus1 SINE Alu 1 147 -1 9 1340 243 307 131 23 chr9 98977491 98977621 -25098551 - RSINE1 SINE B4 0 165 22 9 1340 1144 80 97 18 chr9 98978417 98978582 -25097590 + B2_Mm1t SINE B2 2 179 -14 9 1340 343 72 0 38 chr9 98978628 98978738 -25097434 + B2_Mm2 SINE B2 47 188 -7 9 1340 650 199 253 17 chr9 98978751 98978925 -25097247 - B3 SINE B2 0 216 2 9 1340 298 197 45 0 chr9 98978937 98979003 -25097169 - ID_B1 SINE B4 -70 154 86 9 1340 575 287 31 63 chr9 98979473 98979548 -25096624 - ID_B1 SINE B4 -3 221 146 9 1340 1222 54 0 0 chr9 98979548 98979695 -25096477 - B1_Mus2 SINE Alu 0 147 1 9 1340 575 287 31 63 chr9 98979695 98979842 -25096330 - ID_B1 SINE B4 -79 145 6 9 1340 418 214 71 0 chr9 98980314 98980398 -25095774 + B1F2 SINE Alu 19 108 -41 9 1340 343 332 89 15 chr9 98980448 98980650 -25095522 - MER21B LTR ERV1 -214 649 433 9 1340 21 0 0 0 chr9 98980703 98980724 -25095448 + AT_rich Low_complexity Low_complexity 1 21 0 9 1340 442 224 0 0 chr9 98980757 98980842 -25095330 - B3 SINE B2 -98 118 34 9 1340 1075 92 34 98 chr9 98980842 98980872 -25095300 - B2_Mm2 SINE B2 0 195 161 9 1340 739 87 0 16 chr9 98980872 98981000 -25095172 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 9 1340 1075 92 34 98 chr9 98981000 98981174 -25094998 - B2_Mm2 SINE B2 -35 160 4 9 1340 793 285 10 5 chr9 98981190 98981391 -25094781 - B3 SINE B2 -5 211 10 9 1340 256 299 34 11 chr9 98981732 98981820 -25094352 + PB1D10 SINE Alu 1 90 -27 9 1340 323 297 11 11 chr9 98982552 98982644 -25093528 - ID_B1 SINE B4 -46 178 87 9 1340 247 201 139 26 chr9 98982688 98982766 -25093406 - PB1D7 SINE Alu -25 95 9 9 1340 264 326 46 0 chr9 98982822 98982956 -25093216 - L1MDb LINE L1 -5467 1166 1028 9 1340 560 248 54 0 chr9 98983821 98983950 -25092222 + ID_B1 SINE B4 88 223 -1 9 1340 266 271 35 161 chr9 98984163 98984363 -25091809 + B3 SINE B2 11 182 -16 9 1340 282 160 0 0 chr9 98984363 98984413 -25091759 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1340 351 113 0 0 chr9 98984441 98984494 -25091678 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1340 204 40 0 0 chr9 98984532 98984557 -25091615 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1340 354 98 0 0 chr9 98984634 98984685 -25091487 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1340 337 104 0 107 chr9 98984706 98984781 -25091391 + B1_Mur4 SINE Alu 83 149 -1 9 1340 444 223 0 0 chr9 98984939 98985042 -25091130 + (TA)n Simple_repeat Simple_repeat 2 104 0 9 1340 368 283 84 28 chr9 98985103 98985245 -25090927 - RSINE1 SINE B4 -14 151 2 9 1340 379 256 40 77 chr9 98985246 98985416 -25090756 - B3A SINE B2 0 216 57 9 1340 531 202 20 3 chr9 98985436 98985554 -25090618 - B1_Mur1 SINE Alu 0 120 3 9 1340 323 167 15 0 chr9 98985572 98985638 -25090534 + CT-rich Low_complexity Low_complexity 4 70 0 9 1340 585 186 104 8 chr9 98985639 98985764 -25090408 - B1_Mus1 SINE Alu -7 141 5 9 1340 278 240 27 0 chr9 98985764 98985839 -25090333 + L1M5 LINE L1 3503 3579 -2567 9 1340 544 265 38 16 chr9 98985874 98986058 -25090114 + B3A SINE B2 2 189 -9 9 1340 638 211 20 27 chr9 98986074 98986220 -25089952 + B1_Mur4 SINE Alu 6 150 0 9 1340 429 291 59 55 chr9 98986659 98986895 -25089277 + MLT2B4 LTR ERVL 259 495 -61 9 1340 379 277 92 26 chr9 98987510 98987662 -25088510 + RSINE1 SINE B4 4 165 0 9 1340 354 309 176 7 chr9 98988375 98988528 -25087644 - B3 SINE B2 -30 186 8 9 1340 527 246 14 48 chr9 98988563 98988708 -25087464 + ID_B1 SINE B4 78 217 -7 9 1340 410 81 2 0 chr9 98988804 98988870 -25087302 + B1_Mus1 SINE Alu 1 67 -83 9 1340 1287 202 159 25 chr9 98989161 98989526 -25086646 + MTC LTR MaLR 4 417 -4 9 1340 573 234 0 24 chr9 98989605 98989732 -25086440 + B1_Mus2 SINE Alu 3 126 -21 9 1340 256 259 149 18 chr9 98989845 98989959 -25086213 + B1F2 SINE Alu 5 133 -16 9 1340 1302 95 26 5 chr9 98990025 98990215 -25085957 + B2_Mm2 SINE B2 2 195 0 9 1340 402 271 19 0 chr9 98990922 98991029 -25085143 + B3 SINE B2 108 216 0 9 1340 442 248 65 95 chr9 98991046 98991215 -25084957 + RSINE1 SINE B4 2 165 0 9 1340 513 0 0 0 chr9 98992800 98992857 -25083315 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1340 381 254 39 47 chr9 98992874 98993002 -25083170 - RSINE1 SINE B4 -36 129 3 9 1340 241 305 38 9 chr9 98993811 98993917 -25082255 + ID_B1 SINE B4 84 192 -32 9 1340 514 236 63 0 chr9 98994290 98994417 -25081755 - B1_Mus2 SINE Alu -7 140 6 9 1340 315 267 11 22 chr9 98994338 98994430 -25081742 - MT2B LTR ERVL -354 247 157 9 1340 226 245 0 20 chr9 98994560 98994610 -25081562 - ID4_ SINE ID -10 73 25 9 1340 258 314 54 54 chr9 98995945 98996056 -25080116 - PB1D7 SINE Alu -9 111 1 9 1340 426 108 0 0 chr9 98996226 98996291 -25079881 + (CA)n Simple_repeat Simple_repeat 1 65 0 9 1340 370 339 8 0 chr9 98996291 98996409 -25079763 - RSINE1 SINE B4 -43 122 4 9 1340 549 275 52 29 chr9 98996505 98996677 -25079495 + B3A SINE B2 1 176 -22 9 1340 467 362 26 11 chr9 98997712 98997902 -25078270 - B4 SINE B4 0 292 100 9 1340 580 198 15 31 chr9 98997925 98998055 -25078117 - B1_Mur2 SINE Alu -1 148 21 9 1340 525 265 39 52 chr9 98998138 98998293 -25077879 + RSINE1 SINE B4 2 154 -11 9 1340 263 206 54 0 chr9 98998757 98998849 -25077323 + PB1 SINE Alu 31 127 0 9 1340 340 273 0 0 chr9 98999921 98999998 -25076174 + RSINE1 SINE B4 3 79 -86 9 1340 452 184 10 0 chr9 99000032 99000130 -25076042 + CT-rich Low_complexity Low_complexity 1 99 0 1 1340 202 139 56 44 chr9 99000136 99000226 -25075946 + (CAGAGA)n Simple_repeat Simple_repeat 6 96 0 2 1340 582 28 0 0 chr9 99000249 99000321 -25075851 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 3 1340 397 218 281 22 chr9 99000645 99000823 -25075349 - ID_B1 SINE B4 0 224 1 4 1340 252 216 3 0 chr9 99001039 99001098 -25075074 + PB1D10 SINE Alu 1 60 -67 5 1340 467 189 2 11 chr9 99001114 99001235 -25074937 - B1_Mur1 SINE Alu -1 148 3 6 1340 633 196 22 22 chr9 99001955 99002091 -25074081 + B1_Mur4 SINE Alu 15 150 0 7 1340 808 179 28 11 chr9 99002105 99002286 -25073886 + B3 SINE B2 27 210 -6 8 1340 288 0 0 0 chr9 99002501 99002533 -25073639 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 1340 396 0 0 0 chr9 99002533 99002576 -25073596 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1340 314 231 62 69 chr9 99002713 99002843 -25073329 + RLTR42-int LTR ERVK 1175 1303 -4219 1 1340 434 269 46 0 chr9 99003344 99003452 -25072720 + ID_B1 SINE B4 86 198 -26 1 1340 467 198 85 17 chr9 99003618 99003736 -25072436 + ID_B1 SINE B4 97 222 -2 1 1340 24 32 0 0 chr9 99003939 99003970 -25072202 + AT_rich Low_complexity Low_complexity 1 31 0 1 1340 519 324 7 7 chr9 99004124 99004273 -25071899 + RSINE1 SINE B4 2 150 -15 1 1340 709 212 0 14 chr9 99004690 99004829 -25071343 + B1_Mur1 SINE Alu 4 140 -9 1 1340 401 281 8 24 chr9 99004856 99004980 -25071192 + RSINE1 SINE B4 2 123 -42 1 1340 693 192 82 0 chr9 99004974 99005120 -25071052 + B3 SINE B2 50 207 -9 1 1340 349 250 0 22 chr9 99005393 99005483 -25070689 - ID_B1 SINE B4 -15 209 122 1 1340 1018 57 14 0 chr9 99005553 99005694 -25070478 - B1_Mus1 SINE Alu 0 148 6 2 1340 359 303 41 61 chr9 99006348 99006545 -25069627 - B3A SINE B2 -5 193 1 2 1340 1534 47 21 5 chr9 99006557 99006749 -25069423 - B2_Mm2 SINE B2 0 195 1 2 1340 574 245 56 7 chr9 99006861 99007005 -25069167 - B3A SINE B2 -47 151 1 2 1340 201 241 0 0 chr9 99007020 99007035 -25069137 + A-rich Low_complexity Low_complexity 1 15 0 2 1340 1099 41 7 52 chr9 99007035 99007189 -25068983 + B1_Mus2 SINE Alu 1 147 0 2 1340 201 241 0 0 chr9 99007189 99007227 -25068945 + A-rich Low_complexity Low_complexity 16 53 0 2 1340 2491 122 152 28 chr9 99007267 99007773 -25068399 + RMER4B LTR ERVK 17 585 0 2 1340 204 40 0 0 chr9 99007827 99007852 -25068320 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1340 334 259 40 5 chr9 99007891 99008001 -25068171 + B1F SINE Alu 1 109 -8 2 1340 207 0 0 0 chr9 99008001 99008024 -25068148 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 3 1340 395 223 152 62 chr9 99008038 99008215 -25067957 + B3A SINE B2 2 194 -4 3 1340 239 293 110 0 chr9 99008471 99008553 -25067619 - B1F2 SINE Alu -55 94 4 3 1340 281 259 0 76 chr9 99008617 99008709 -25067463 - PB1D10 SINE Alu -16 101 17 3 1340 370 284 72 72 chr9 99008629 99008796 -25067376 - ID_B1 SINE B4 -52 172 6 3 1340 270 329 24 0 chr9 99008841 99008923 -25067249 - ID_B1 SINE B4 -63 161 78 3 1340 476 242 148 0 chr9 99008936 99009064 -25067108 + B1_Mus2 SINE Alu 1 147 0 3 1340 547 165 195 25 chr9 99009078 99009196 -25066976 + B1_Mur2 SINE Alu 5 142 -7 3 1340 586 169 125 31 chr9 99009250 99009378 -25066794 + B1_Mur3 SINE Alu 1 140 -9 3 1340 878 0 10 0 chr9 99009379 99009481 -25066691 + (GAGAA)n Simple_repeat Simple_repeat 5 107 0 3 1340 833 111 15 0 chr9 99009495 99009630 -25066542 + (GAAA)n Simple_repeat Simple_repeat 1 137 0 4 1340 273 196 18 0 chr9 99009666 99009722 -25066450 + ID4_ SINE ID 21 77 -6 4 1340 269 260 27 14 chr9 99010950 99011024 -25065148 - PB1D7 SINE Alu -1 119 45 4 1340 350 176 25 27 chr9 99011258 99011340 -25064832 - PB1D9 SINE Alu 0 127 42 4 1340 240 250 28 0 chr9 99011945 99012017 -25064155 + Charlie25 DNA MER1_type 1159 1232 -1292 4 1340 618 165 26 9 chr9 99012333 99012449 -25063723 + PB1D9 SINE Alu 1 118 -2 4 1340 575 177 60 26 chr9 99012486 99012602 -25063570 - PB1D9 SINE Alu 0 120 1 4 1340 198 0 0 0 chr9 99012807 99012829 -25063343 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4 1340 566 99 161 9 chr9 99012830 99012942 -25063230 - Lx4A LINE L1 -3 7055 6927 4 1340 286 254 16 0 chr9 99013569 99013632 -25062540 + ID4_ SINE ID 1 64 -19 4 1340 939 200 81 15 chr9 99013714 99013912 -25062260 + B3 SINE B2 1 211 -5 5 1340 333 0 0 0 chr9 99014330 99014367 -25061805 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1340 309 232 171 0 chr9 99014367 99014449 -25061723 + PB1D9 SINE Alu 18 113 -7 5 1340 225 0 0 0 chr9 99014452 99014477 -25061695 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 1340 480 263 9 0 chr9 99014618 99014732 -25061440 - PB1D7 SINE Alu -5 115 1 5 1340 4408 73 2 0 chr9 99014905 99015467 -25060705 - L1_Mus2 LINE L1 0 6566 6004 5 1340 1150 41 0 46 chr9 99015628 99015780 -25060392 - B1_Mus2 SINE Alu -1 146 2 5 1340 568 279 31 0 chr9 99015878 99016007 -25060165 - RSINE1 SINE B4 -32 133 1 5 1340 1328 87 49 0 chr9 99017366 99017549 -25058623 + B2_Mm2 SINE B2 4 195 0 5 1340 263 317 47 19 chr9 99017864 99017970 -25058202 + PB1D7 SINE Alu 2 110 -10 5 1340 228 265 129 30 chr9 99018086 99018187 -25057985 + B1F1 SINE Alu 38 148 -1 6 1340 327 252 194 8 chr9 99018221 99018345 -25057827 + B1_Mur2 SINE Alu 3 149 0 6 1340 1101 131 0 0 chr9 99018351 99018527 -25057645 + (GGA)n Simple_repeat Simple_repeat 3 178 0 6 1340 214 262 16 0 chr9 99018527 99018582 -25057590 + GA-rich Low_complexity Low_complexity 7 62 0 6 1340 441 314 92 35 chr9 99018712 99018973 -25057199 - B4A SINE B4 -10 282 7 6 1340 546 304 54 27 chr9 99019408 99019668 -25056504 + B4A SINE B4 1 267 -25 6 1340 767 219 124 5 chr9 99019765 99019958 -25056214 + B3 SINE B2 1 216 0 6 1340 273 342 16 49 chr9 99019976 99020099 -25056073 + RSINE1 SINE B4 3 121 -44 6 1340 321 131 0 0 chr9 99020112 99020173 -25055999 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 1340 263 210 16 16 chr9 99020745 99020808 -25055364 + B4A SINE B4 87 149 -143 6 1340 480 205 113 16 chr9 99020826 99020950 -25055222 + ID_B1 SINE B4 89 224 0 7 1340 471 248 9 0 chr9 99021113 99021226 -25054946 + PB1D7 SINE Alu 5 118 -2 7 1340 453 207 91 56 chr9 99021365 99021508 -25054664 + B1_Mur1 SINE Alu 1 148 -1 7 1340 1084 180 29 14 chr9 99021521 99021730 -25054442 + B3 SINE B2 1 212 -4 7 1340 601 218 87 53 chr9 99021849 99022057 -25054115 + B3 SINE B2 1 215 -1 7 1340 722 188 0 0 chr9 99022195 99022328 -25053844 + B1_Mur3 SINE Alu 15 147 -2 7 1340 319 266 96 0 chr9 99022367 99022461 -25053711 + B1F SINE Alu 16 118 -31 7 1340 351 248 143 27 chr9 99023595 99023707 -25052465 + B3A SINE B2 36 160 -38 7 1340 507 191 37 19 chr9 99023770 99023877 -25052295 + PB1D9 SINE Alu 4 112 -8 7 1340 335 289 31 10 chr9 99023887 99023985 -25052187 - MER45A DNA Tip100 -36 142 43 7 1340 553 191 29 0 chr9 99024028 99024133 -25052039 + PB1D9 SINE Alu 6 113 -7 8 1340 1267 92 40 0 chr9 99024147 99024320 -25051852 + B2_Mm2 SINE B2 1 180 -15 8 1340 437 288 59 22 chr9 99024465 99024600 -25051572 + ID_B1 SINE B4 84 223 -1 8 1340 1234 34 7 0 chr9 99024697 99024843 -25051329 + B1_Mus2 SINE Alu 1 147 0 8 1340 180 250 0 0 chr9 99025223 99025271 -25050901 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 8 1340 811 169 195 38 chr9 99025295 99025480 -25050692 - B3 SINE B2 -1 215 2 8 1340 769 270 198 17 chr9 99025487 99025891 -25050281 + RCHARR1 DNA MER1_type 3 479 -495 8 1340 606 103 31 24 chr9 99025915 99026031 -25050141 + B1_Mur2 SINE Alu 16 120 0 8 1340 466 258 0 8 chr9 99026098 99026231 -25049941 + RCHARR1 DNA MER1_type 475 606 -368 8 1340 470 243 77 6 chr9 99026230 99026400 -25049772 + RCHARR1 DNA MER1_type 745 926 -48 8 1340 347 211 120 22 chr9 99026713 99026805 -25049367 + B1F2 SINE Alu 47 147 -2 8 1340 252 59 0 0 chr9 99026872 99026906 -25049266 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1340 1208 29 0 0 chr9 99026906 99027044 -25049128 - B1_Mus2 SINE Alu -9 138 1 9 1340 214 245 20 0 chr9 99027202 99027251 -25048921 + B4A SINE B4 87 136 -156 9 1340 456 246 69 17 chr9 99027207 99027323 -25048849 + B1_Mur1 SINE Alu 8 129 -20 9 1340 337 261 151 0 chr9 99027347 99027466 -25048706 - ID_B1 SINE B4 -6 218 82 9 1340 948 187 4 171 chr9 99027474 99027732 -25048440 - B3 SINE B2 0 216 2 9 1340 372 225 25 0 chr9 99027739 99027819 -25048353 - PB1D9 SINE Alu -5 115 34 9 1340 26 30 0 0 chr9 99028436 99028469 -25047703 + AT_rich Low_complexity Low_complexity 1 33 0 9 1340 379 179 0 0 chr9 99029319 99029386 -25046786 - URR1B DNA MER1_type 0 225 159 9 1340 700 184 0 0 chr9 99029499 99029624 -25046548 - B1_Mur4 SINE Alu -23 127 3 9 1340 217 297 48 56 chr9 99029520 99029645 -25046527 - B4A SINE B4 -98 194 71 9 1340 267 185 68 68 chr9 99029900 99029991 -25046181 - B1_Mur1 SINE Alu -14 135 3 1 1340 565 224 72 29 chr9 99030192 99030330 -25045842 + B1_Mur2 SINE Alu 5 148 -1 1 1340 468 246 16 48 chr9 99030335 99030459 -25045713 + PB1D7 SINE Alu 1 120 0 1 1340 367 203 0 0 chr9 99030476 99030535 -25045637 + ID4_ SINE ID 5 63 -20 1 1340 826 190 109 0 chr9 99030673 99030857 -25045315 + B3 SINE B2 2 205 -11 1 1340 211 218 0 154 chr9 99030882 99030947 -25045225 + B3 SINE B2 2 56 -160 1 1340 259 135 0 0 chr9 99030949 99031001 -25045171 + B3 SINE B2 165 216 0 1 1340 263 341 167 6 chr9 99031047 99031221 -25044951 + MIR SINE MIR 61 262 0 1 1340 342 276 88 25 chr9 99031456 99031633 -25044539 + ID_B1 SINE B4 15 197 -95 1 1340 182 37 37 0 chr9 99031652 99031679 -25044493 + (CCA)n Simple_repeat Simple_repeat 2 29 0 1 1340 266 277 51 41 chr9 99032155 99032253 -25043919 + PB1D7 SINE Alu 9 107 -13 1 1340 950 158 70 43 chr9 99033382 99033567 -25042605 + B2_Mm2 SINE B2 3 192 -3 1 1340 421 189 0 112 chr9 99033567 99033682 -25042490 + MT2B LTR ERVL 162 264 -337 1 1340 966 32 0 0 chr9 99033571 99033695 -25042477 + B1_Mm SINE Alu 2 125 -22 1 1340 1098 112 15 0 chr9 99033695 99033882 -25042290 + B2_Mm1t SINE B2 1 194 -1 1 1340 203 182 0 0 chr9 99033883 99033916 -25042256 + polypurine Low_complexity Low_complexity 3 35 0 1 1340 183 42 0 0 chr9 99033954 99033978 -25042194 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1 1340 572 160 40 40 chr9 99033989 99034113 -25042059 - B1_Mm SINE Alu 0 147 24 1 1340 393 183 35 80 chr9 99034125 99034238 -25041934 + PB1D9 SINE Alu 13 120 0 1 1340 223 229 230 63 chr9 99034126 99034252 -25041920 + B4A SINE B4 99 245 -47 1 1340 270 236 270 73 chr9 99034337 99034474 -25041698 + RSINE1 SINE B4 2 165 0 1 1340 222 37 0 0 chr9 99034487 99034514 -25041658 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1340 248 325 21 30 chr9 99034521 99034670 -25041502 + PB1D10 SINE Alu 2 145 -4 1 1340 456 213 21 99 chr9 99034688 99034829 -25041343 + B1_Mur2 SINE Alu 9 138 -11 1 1340 490 239 0 27 chr9 99035268 99035380 -25040792 - PB1D7 SINE Alu 0 120 12 1 1340 249 294 32 21 chr9 99035302 99035396 -25040776 - B4A SINE B4 -119 173 79 1 1340 204 222 0 0 chr9 99035649 99035685 -25040487 + (CACG)n Simple_repeat Simple_repeat 4 39 0 1 1340 381 211 11 22 chr9 99035717 99035809 -25040363 + B1F2 SINE Alu 54 144 -5 1 1340 212 314 48 10 chr9 99035923 99036026 -25040146 + PB1D7 SINE Alu 11 117 -3 1 1340 403 253 39 0 chr9 99036217 99036345 -25039827 + B1F1 SINE Alu 5 148 -2 1 1340 319 255 122 9 chr9 99036421 99036528 -25039644 + PB1D7 SINE Alu 2 120 0 1 1340 180 0 0 0 chr9 99036528 99036548 -25039624 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1340 723 62 0 0 chr9 99036587 99036684 -25039488 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 1340 212 274 16 31 chr9 99036686 99036706 -25039466 - ID4 SINE ID -19 64 2 1 1340 214 227 23 0 chr9 99036706 99036750 -25039422 - ID SINE ID -178 46 2 1 1340 247 290 14 0 chr9 99036782 99036851 -25039321 + B3A SINE B2 2 71 -127 1 1340 336 244 83 42 chr9 99036850 99036970 -25039202 - B1F1 SINE Alu -4 145 21 1 1340 231 61 0 0 chr9 99036993 99037026 -25039146 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1340 1175 29 7 0 chr9 99037026 99037164 -25039008 - B1_Mus1 SINE Alu -9 139 1 1 1340 301 274 112 9 chr9 99037248 99037355 -25038817 + B3 SINE B2 93 210 -6 1 1340 22 0 0 0 chr9 99037356 99037378 -25038794 + AT_rich Low_complexity Low_complexity 1 22 0 1 1340 219 288 78 23 chr9 99037523 99037651 -25038521 - L2 LINE L2 -1057 2362 2228 1 1340 926 125 7 0 chr9 99037951 99038087 -25038085 + B1_Mur4 SINE Alu 1 137 -13 1 1340 455 282 21 62 chr9 99038321 99038514 -25037658 + ID_B1 SINE B4 9 193 -31 1 1340 25 0 0 0 chr9 99038648 99038673 -25037499 + AT_rich Low_complexity Low_complexity 1 25 0 1 1340 569 305 31 31 chr9 99038986 99039179 -25036993 - B4 SINE B4 -43 249 57 1 1340 347 250 101 9 chr9 99039178 99039287 -25036885 + B1_Mus2 SINE Alu 23 141 -6 1 1340 249 33 0 0 chr9 99039321 99039351 -25036821 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1340 207 196 20 0 chr9 99040599 99040650 -25035522 + (CG)n Simple_repeat Simple_repeat 2 53 0 1 1340 449 237 69 35 chr9 99041416 99041560 -25034612 + B1F SINE Alu 1 149 0 1 1340 471 101 38 0 chr9 99041929 99042008 -25034164 + B1_Mur3 SINE Alu 49 130 -19 1 1340 450 124 0 0 chr9 99042010 99042099 -25034073 + (GA)n Simple_repeat Simple_repeat 1 89 0 1 1340 829 163 13 33 chr9 99042884 99043036 -25033136 + B1_Mur3 SINE Alu 1 149 0 1 1340 267 31 0 0 chr9 99043045 99043077 -25033095 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 1 1340 393 82 16 0 chr9 99043177 99043238 -25032934 + B1_Mur1 SINE Alu 68 129 -20 1 1340 618 14 0 0 chr9 99043252 99043323 -25032849 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1 1340 423 264 161 28 chr9 99043331 99043549 -25032623 + MLT1C LTR MaLR 169 415 -52 1 1340 192 77 0 0 chr9 99043552 99043578 -25032594 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1340 249 219 23 23 chr9 99044222 99044333 -25031839 - Lx7 LINE L1 -18 7678 7601 1 1340 401 229 0 71 chr9 99044352 99044465 -25031707 - Lx7 LINE L1 -375 7321 7217 1 1340 1234 41 0 7 chr9 99044499 99044648 -25031524 - B1_Mus1 SINE Alu 0 148 1 1 1340 471 266 55 0 chr9 99044743 99044871 -25031301 + ID_B1 SINE B4 90 224 0 1 1340 204 40 0 0 chr9 99045403 99045428 -25030744 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1340 334 82 66 0 chr9 99045470 99045531 -25030641 + (GGGAGA)n Simple_repeat Simple_repeat 4 68 0 1 1340 403 187 0 53 chr9 99045740 99045853 -25030319 + GA-rich Low_complexity Low_complexity 2 108 0 1 1340 234 0 0 0 chr9 99045890 99045916 -25030256 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1340 291 28 0 0 chr9 99045940 99045976 -25030196 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1340 406 259 26 9 chr9 99046083 99046196 -25029976 + B1F SINE Alu 10 124 -25 1 1340 239 326 72 21 chr9 99046583 99046680 -25029492 - RSINE1 SINE B4 -52 113 12 1 1340 585 0 0 0 chr9 99046681 99046746 -25029426 + (TTTCC)n Simple_repeat Simple_repeat 1 65 0 1 1340 745 140 15 0 chr9 99046747 99046883 -25029289 + CT-rich Low_complexity Low_complexity 3 140 0 1 1340 210 200 0 35 chr9 99046883 99046940 -25029232 + T-rich Low_complexity Low_complexity 5 59 0 1 1340 398 127 0 0 chr9 99046949 99047012 -25029160 - B3 SINE B2 -125 91 29 1 1340 245 278 134 0 chr9 99047165 99047262 -25028910 - PB1D10 SINE Alu -1 116 7 1 1340 295 270 57 131 chr9 99047516 99047691 -25028481 + RSINE1 SINE B4 3 164 -1 1 1340 406 173 8 120 chr9 99048104 99048229 -25027943 + MT2B LTR ERVL 154 264 -337 1 1340 1018 37 15 0 chr9 99048118 99048254 -25027918 + B1_Mus2 SINE Alu 2 139 -8 1 1340 213 39 0 0 chr9 99048270 99048296 -25027876 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1340 453 255 9 36 chr9 99048709 99048819 -25027353 + RSINE1 SINE B4 11 117 -48 1 1340 742 65 53 12 chr9 99048822 99048993 -25027179 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1340 832 86 22 22 chr9 99049005 99049184 -25026988 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1340 1368 42 57 10 chr9 99049252 99049444 -25026728 + L1_Mus3 LINE L1 6438 6638 0 1 1340 225 0 0 0 chr9 99049567 99049592 -25026580 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1340 446 122 27 0 chr9 99049602 99049676 -25026496 + B1_Mur4 SINE Alu 41 116 -34 1 1340 198 0 0 0 chr9 99049685 99049707 -25026465 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 1340 1136 58 0 0 chr9 99049765 99049902 -25026270 - B1_Mus1 SINE Alu -10 138 2 1 1340 980 163 65 93 chr9 99050270 99050364 -25025808 + B3 SINE B2 1 89 -127 1 1340 193 29 0 56 chr9 99050364 99050400 -25025772 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1340 1264 34 0 0 chr9 99050406 99050552 -25025620 - B1_Mus1 SINE Alu 0 148 3 1 1340 980 163 65 93 chr9 99050552 99050646 -25025526 + B3 SINE B2 90 187 -29 1 1340 234 0 0 0 chr9 99050646 99050672 -25025500 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1340 980 163 65 93 chr9 99050672 99050691 -25025481 + B3 SINE B2 188 209 -7 1 1340 450 108 0 0 chr9 99050773 99050847 -25025325 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1340 942 161 0 0 chr9 99051003 99051152 -25025020 + B1_Mur4 SINE Alu 2 150 0 1 1340 532 222 112 12 chr9 99051177 99051337 -25024835 + B3 SINE B2 28 203 -13 1 1340 27 62 0 0 chr9 99051338 99051386 -25024786 + AT_rich Low_complexity Low_complexity 1 48 0 1 1340 1583 188 51 51 chr9 99051393 99051607 -25024565 + RMER17C LTR ERVK 1 212 -198 1 1340 315 0 0 0 chr9 99051607 99051642 -25024530 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1340 1583 188 51 51 chr9 99051642 99051837 -25024335 + RMER17C LTR ERVK 213 410 0 1 1340 244 94 38 0 chr9 99052085 99052138 -25024034 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1340 757 78 0 0 chr9 99052138 99052240 -25023932 - B1_Mus2 SINE Alu 0 147 46 1 1340 213 39 0 0 chr9 99052310 99052336 -25023836 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1340 708 95 191 0 chr9 99052376 99052502 -25023670 - B1_Mur4 SINE Alu 0 150 1 1 1340 536 269 15 0 chr9 99052502 99052632 -25023540 - B1_Mur2 SINE Alu -16 133 2 1 1340 1231 61 0 0 chr9 99052892 99053040 -25023132 + B1_Mus1 SINE Alu 1 148 0 1 1340 189 0 0 0 chr9 99053147 99053168 -25023004 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1340 435 254 0 41 chr9 99053634 99053757 -25022415 + ID_B1 SINE B4 107 224 0 1 1340 384 283 9 0 chr9 99054026 99054132 -25022040 + PB1D10 SINE Alu 4 110 -7 2 1340 473 306 0 8 chr9 99054365 99054487 -25021685 + ID_B1 SINE B4 81 201 -23 2 1340 370 299 14 36 chr9 99054688 99054827 -25021345 + ID_B1 SINE B4 81 216 -8 2 1340 435 231 80 20 chr9 99054837 99054987 -25021185 + B3A SINE B2 2 160 -38 2 1340 180 0 0 0 chr9 99055041 99055061 -25021111 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1340 468 260 118 0 chr9 99055068 99055195 -25020977 + RSINE1 SINE B4 11 152 -13 2 1340 285 29 0 0 chr9 99055198 99055232 -25020940 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1340 192 200 0 0 chr9 99055362 99055407 -25020765 + (TATG)n Simple_repeat Simple_repeat 3 47 0 2 1340 458 237 34 0 chr9 99055439 99055557 -25020615 - B1F2 SINE Alu -23 126 5 2 1340 330 250 12 12 chr9 99056014 99056095 -25020077 - RSINE1 SINE B4 -2 163 83 2 1340 691 201 41 31 chr9 99056138 99056334 -25019838 - B3A SINE B2 -1 215 21 2 1340 443 287 22 37 chr9 99056320 99056454 -25019718 - B1F1 SINE Alu -4 145 14 2 1340 250 294 36 89 chr9 99056363 99056475 -25019697 - MT2B LTR ERVL -341 260 155 2 1340 1301 20 0 0 chr9 99056489 99056636 -25019536 - B1_Mus2 SINE Alu 0 147 1 2 1340 798 167 27 20 chr9 99056677 99056824 -25019348 + B1_Mus1 SINE Alu 1 148 0 2 1340 320 354 26 26 chr9 99056836 99056952 -25019220 + PB1D9 SINE Alu 5 120 0 2 1340 489 34 0 0 chr9 99057031 99057090 -25019082 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1340 601 245 62 137 chr9 99057237 99057464 -25018708 - B3 SINE B2 -6 210 1 2 1340 784 142 0 0 chr9 99057643 99057756 -25018416 + B1_Mus1 SINE Alu 2 114 -34 2 1340 318 87 0 0 chr9 99057791 99057837 -25018335 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1340 216 188 0 0 chr9 99057912 99057960 -25018212 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2 1340 783 127 44 22 chr9 99057960 99058097 -25018075 - B1_Mur2 SINE Alu -1 148 9 2 1340 613 243 7 7 chr9 99058170 99058311 -25017861 + B1_Mur2 SINE Alu 2 142 -7 2 1340 749 169 65 0 chr9 99058354 99058478 -25017694 - B1_Mm SINE Alu -11 136 5 2 1340 180 0 0 0 chr9 99059125 99059145 -25017027 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1340 760 196 8 8 chr9 99059153 99059287 -25016885 - B1_Mus1 SINE Alu 0 148 15 2 1340 256 274 9 136 chr9 99059198 99059308 -25016864 - MT2B LTR ERVL -344 257 162 2 1340 453 248 8 58 chr9 99059522 99059642 -25016530 - PB1D10 SINE Alu -2 115 2 2 1340 844 245 41 33 chr9 99059845 99060112 -25016060 + Lx8 LINE L1 6882 7176 -297 2 1340 314 270 123 13 chr9 99060080 99060234 -25015938 + Lx8 LINE L1 7301 7471 -2 2 1340 282 29 0 0 chr9 99060613 99060648 -25015524 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1340 333 216 27 13 chr9 99060706 99060780 -25015392 + PB1D10 SINE Alu 31 105 -12 2 1340 277 300 19 108 chr9 99060780 99060807 -25015365 + B1_Mur1 SINE Alu 1 143 -6 2 1340 430 273 0 69 chr9 99060807 99060937 -25015235 + ID_B1 SINE B4 98 218 -6 2 1340 277 276 8 139 chr9 99060948 99061070 -25015102 + MT2B LTR ERVL 152 257 -344 2 1340 700 225 7 40 chr9 99060964 99061112 -25015060 + B1_Mur2 SINE Alu 3 145 -4 2 1340 242 296 0 0 chr9 99061212 99061266 -25014906 + polypurine Low_complexity Low_complexity 3 56 0 2 1340 183 80 0 0 chr9 99062697 99062722 -25013450 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1340 581 285 0 0 chr9 99062753 99062876 -25013296 + ID_B1 SINE B4 82 204 -20 2 1340 226 295 36 79 chr9 99062755 99062895 -25013277 + MT2B LTR ERVL 167 300 -301 2 1340 225 0 0 0 chr9 99062920 99062945 -25013227 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 2 1340 243 286 143 0 chr9 99063067 99063151 -25013021 + B1F1 SINE Alu 2 97 -52 2 1340 722 182 0 16 chr9 99063184 99063312 -25012860 + B1_Mur1 SINE Alu 24 149 0 2 1340 291 265 88 97 chr9 99063323 99063436 -25012736 + PB1 SINE Alu 1 112 -5 2 1340 276 0 68 0 chr9 99063749 99063793 -25012379 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1340 236 226 0 75 chr9 99063884 99063951 -25012221 + ID4_ SINE ID 2 63 -20 2 1340 318 249 56 139 chr9 99064216 99064431 -25011741 + L2b LINE L2 3178 3374 -1 2 1340 229 223 219 18 chr9 99064747 99064763 -25011409 + B1_Mus1 SINE Alu 1 135 -11 2 1340 475 169 31 10 chr9 99064763 99064859 -25011313 + ID_B1 SINE B4 114 211 -13 2 1340 417 242 172 15 chr9 99064860 99064994 -25011178 + RSINE1 SINE B4 3 157 -8 2 1340 248 289 59 104 chr9 99065571 99065606 -25010566 + ID_B1 SINE B4 80 121 -103 2 1340 580 257 14 0 chr9 99065606 99065746 -25010426 + B1_Mus2 SINE Alu 5 146 -1 2 1340 248 289 59 104 chr9 99065746 99065845 -25010327 + ID_B1 SINE B4 122 208 -16 2 1340 219 69 0 0 chr9 99065847 99065876 -25010296 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1340 420 20 0 0 chr9 99065900 99065949 -25010223 + (GAGAA)n Simple_repeat Simple_repeat 5 53 0 2 1340 603 40 0 0 chr9 99065955 99066029 -25010143 + (GGAA)n Simple_repeat Simple_repeat 2 75 0 2 1340 396 264 35 0 chr9 99066106 99066193 -25009979 + B4 SINE B4 83 172 -120 2 1340 226 291 0 0 chr9 99066207 99066262 -25009910 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1340 243 0 0 0 chr9 99066264 99066291 -25009881 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 1340 271 200 282 0 chr9 99067066 99067151 -25009021 + PB1D10 SINE Alu 2 110 -7 2 1340 252 122 0 0 chr9 99067151 99067192 -25008980 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 2 1340 207 0 0 0 chr9 99067228 99067251 -25008921 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1340 255 103 0 0 chr9 99067314 99067353 -25008819 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 2 1340 25 0 0 0 chr9 99067388 99067413 -25008759 + AT_rich Low_complexity Low_complexity 1 25 0 2 1340 543 206 29 0 chr9 99068035 99068135 -25008037 - ID_B1 SINE B4 0 224 122 2 1340 2729 176 19 57 chr9 99068135 99068487 -25007685 + RMER5 LTR ERV1 1 335 -199 2 1340 1200 68 0 0 chr9 99068487 99068633 -25007539 - B1_Mus2 SINE Alu 0 147 2 2 1340 2729 176 19 57 chr9 99068633 99068820 -25007352 + RMER5 LTR ERV1 336 519 -15 2 1340 378 70 34 34 chr9 99068820 99068879 -25007293 + B1_Mus1 SINE Alu 2 60 -88 2 1340 224 0 0 157 chr9 99068880 99068988 -25007184 + (CAGAG)n Simple_repeat Simple_repeat 5 95 0 2 1340 770 67 0 37 chr9 99068991 99069100 -25007072 + B1_Mus2 SINE Alu 42 146 -1 2 1340 387 0 0 0 chr9 99069310 99069353 -25006819 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1340 258 32 0 0 chr9 99069353 99069383 -25006789 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1340 480 277 7 58 chr9 99069392 99069530 -25006642 - RSINE1 SINE B4 -33 132 2 2 1340 374 300 0 32 chr9 99069532 99069656 -25006516 - PB1D7 SINE Alu 0 120 1 2 1340 338 308 50 43 chr9 99069843 99069982 -25006190 + RSINE1 SINE B4 2 141 -24 2 1340 351 0 0 0 chr9 99069982 99070021 -25006151 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1340 249 175 0 0 chr9 99070085 99070125 -25006047 + MTE-int LTR MaLR 1368 1407 -173 2 1340 333 47 0 0 chr9 99070254 99070297 -25005875 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1340 450 202 182 16 chr9 99070300 99070426 -25005746 - RSINE1 SINE B4 -15 150 4 2 1340 265 281 39 4 chr9 99070525 99070610 -25005562 + MTEa-int LTR MaLR 1425 1502 -7 2 1340 622 274 24 19 chr9 99070639 99070847 -25005325 + ID_B1 SINE B4 5 213 -11 2 1340 471 263 26 17 chr9 99070903 99071019 -25005153 + MTEa LTR MaLR 1 117 -262 2 1340 1134 56 0 0 chr9 99071025 99071167 -25005005 + B2_Mm1t SINE B2 1 142 -51 2 1340 360 0 0 0 chr9 99071171 99071211 -25004961 + (TAA)n Simple_repeat Simple_repeat 3 42 0 2 1340 667 255 33 84 chr9 99071211 99071425 -25004747 + MTEa LTR MaLR 110 312 -67 2 1340 851 188 82 6 chr9 99071866 99072048 -25004124 + B3 SINE B2 14 209 -7 2 1340 1317 157 0 5 chr9 99072207 99072424 -25003748 + MTC LTR MaLR 1 216 -205 2 1340 222 255 0 0 chr9 99072457 99072551 -25003621 + (CA)n Simple_repeat Simple_repeat 1 94 0 2 1340 377 181 22 8 chr9 99072573 99072707 -25003465 + (CA)n Simple_repeat Simple_repeat 2 137 0 2 1340 23 68 0 0 chr9 99072707 99072751 -25003421 + AT_rich Low_complexity Low_complexity 1 44 0 2 1340 246 213 32 16 chr9 99072765 99072827 -25003345 + MLT1C LTR MaLR 286 348 -119 2 1340 271 326 49 35 chr9 99073096 99073239 -25002933 + YREP_Mm Unknown Unknown 152 296 -1516 2 1340 775 171 31 0 chr9 99073121 99073250 -25002922 - B1_Mm SINE Alu -5 142 10 2 1340 267 256 71 113 chr9 99073151 99073255 -25002917 - MT2B LTR ERVL -337 264 172 2 1340 747 286 9 5 chr9 99073255 99073469 -25002703 - ID_B1 SINE B4 -9 215 1 2 1340 267 256 71 113 chr9 99073469 99073505 -25002667 - MT2B LTR ERVL -430 171 130 2 1340 269 316 0 0 chr9 99073490 99073547 -25002625 - PB1 SINE Alu -70 57 1 2 1340 586 273 120 0 chr9 99073619 99073802 -25002370 - ID_B1 SINE B4 -17 207 3 2 1340 251 255 155 10 chr9 99073981 99074084 -25002088 + MLT1-int LTR MaLR 1186 1303 -68 2 1340 347 276 60 20 chr9 99074084 99074184 -25001988 + PB1D10 SINE Alu 4 107 -10 2 1340 213 178 0 0 chr9 99074190 99074235 -25001937 + CT-rich Low_complexity Low_complexity 1 45 0 2 1340 736 329 57 18 chr9 99074248 99074527 -25001645 + MLT2B3 LTR ERVL 43 332 -222 2 1340 334 238 12 48 chr9 99074598 99074682 -25001490 - ID_B1 SINE B4 0 224 144 2 1340 328 255 45 73 chr9 99074682 99074707 -25001465 - B1F SINE Alu 0 148 43 2 1340 325 277 65 32 chr9 99074691 99074814 -25001358 - ID_B1 SINE B4 -28 196 70 2 1340 277 354 0 0 chr9 99074799 99074878 -25001294 + MLT2B3 LTR ERVL 416 494 -60 2 1340 329 239 0 0 chr9 99074928 99074995 -25001177 + B3A SINE B2 3 69 -129 2 1340 970 258 0 48 chr9 99074996 99075248 -25000924 - Lx8 LINE L1 -233 7240 7001 3 1340 2665 151 67 12 chr9 99075263 99075758 -25000414 + RLTR11A LTR ERVK 7 528 0 3 1340 492 18 0 0 chr9 99075797 99075854 -25000318 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1340 2008 244 70 58 chr9 99075858 99076477 -24999695 - Lx8 LINE L1 -522 6951 6326 3 1340 294 242 91 0 chr9 99076908 99076974 -24999198 - B1F SINE Alu -1 148 77 3 1340 256 244 78 89 chr9 99076974 99076992 -24999180 - ID_B1 SINE B4 0 206 136 3 1340 776 169 21 21 chr9 99077078 99077223 -24998949 + B1_Mur4 SINE Alu 6 150 0 3 1340 744 136 0 0 chr9 99077236 99077361 -24998811 + (GGA)n Simple_repeat Simple_repeat 3 127 0 3 1340 1611 188 30 24 chr9 99077689 99078017 -24998155 + RLTR11A2 LTR ERVK 1 330 -197 3 1340 1349 74 23 0 chr9 99078020 99078196 -24997976 + B2_Mm2 SINE B2 2 181 -14 3 1340 322 124 0 7 chr9 99078216 99078271 -24997901 + B2_Mm2 SINE B2 57 109 -107 3 1340 859 108 77 0 chr9 99078332 99078462 -24997710 - B1_Mus1 SINE Alu -3 145 6 3 1340 229 269 86 9 chr9 99078369 99078485 -24997687 - ORR1B1-int LTR MaLR -755 754 630 3 1340 29 0 0 0 chr9 99078717 99078746 -24997426 + AT_rich Low_complexity Low_complexity 1 29 0 3 1340 534 260 67 24 chr9 99078751 99079027 -24997145 + ID_B1 SINE B4 26 223 -1 3 1340 232 204 315 11 chr9 99079081 99079170 -24997002 + PB1D10 SINE Alu 2 117 0 3 1340 301 302 37 19 chr9 99079178 99079286 -24996886 - L1MC LINE L1 -1550 4596 4487 3 1340 2499 77 3 6 chr9 99079781 99080107 -24996065 + ORR1A2 LTR MaLR 3 327 0 3 1340 355 246 61 38 chr9 99080297 99080320 -24995852 + CYRA11_Mm Unknown Y-chromosome 147 172 -445 3 1340 1138 145 4 138 chr9 99080320 99080453 -24995719 - URR1B DNA MER1_type 0 225 116 3 1340 862 172 21 0 chr9 99080453 99080598 -24995574 - B1_Mur4 SINE Alu -1 149 2 3 1340 1138 145 4 138 chr9 99080598 99080696 -24995476 - URR1B DNA MER1_type -110 115 25 3 1340 383 155 131 20 chr9 99081209 99081224 -24994948 - B1_Mm SINE Alu -36 111 92 3 1340 450 0 0 0 chr9 99081224 99081274 -24994898 + (TTAG)n Simple_repeat Simple_repeat 3 52 0 3 1340 439 126 25 4 chr9 99081274 99081357 -24994815 - B1_Mus1 SINE Alu -56 91 2 3 1340 325 272 159 53 chr9 99081359 99081386 -24994786 - B1F1 SINE Alu -2 147 3 3 1340 359 289 144 0 chr9 99081386 99081490 -24994682 - ID_B1 SINE B4 -22 202 84 3 1340 205 98 49 0 chr9 99081575 99081616 -24994556 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 3 1340 459 258 21 45 chr9 99081642 99081812 -24994360 - B3 SINE B2 -1 215 49 3 1340 227 294 89 114 chr9 99081749 99081872 -24994300 - B4A SINE B4 -172 120 1 3 1340 439 255 21 0 chr9 99081979 99082073 -24994099 + B1F1 SINE Alu 10 105 -44 3 1340 412 264 18 28 chr9 99082073 99082088 -24994084 + ID_B1 SINE B4 91 198 -26 3 1340 255 31 0 0 chr9 99082099 99082131 -24994041 + (CAA)n Simple_repeat Simple_repeat 3 34 0 3 1340 250 295 104 77 chr9 99082293 99082473 -24993699 + MIRb SINE MIR 34 239 -29 3 1340 214 242 110 50 chr9 99082787 99082887 -24993285 + L3 LINE CR1 3865 3970 -519 3 1340 221 229 21 0 chr9 99083290 99083338 -24992834 + GA-rich Low_complexity Low_complexity 6 54 0 3 1340 441 0 0 0 chr9 99083348 99083397 -24992775 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1340 1510 293 44 36 chr9 99083405 99083654 -24992518 - Lx8 LINE L1 -612 6861 6622 3 1340 1203 235 20 136 chr9 99083654 99084058 -24992114 - ORR1E LTR MaLR -2 357 1 3 1340 1510 293 44 36 chr9 99084058 99084336 -24991836 - Lx8 LINE L1 -852 6621 6330 3 1340 180 0 0 0 chr9 99084431 99084451 -24991721 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 3 1340 835 96 17 0 chr9 99084451 99084566 -24991606 - B2_Mm2 SINE B2 -37 158 42 3 1340 333 122 0 0 chr9 99084566 99084615 -24991557 + L1_Mur2 LINE L1 4061 4109 -1768 3 1340 476 35 0 0 chr9 99084615 99084672 -24991500 - B2_Mm2 SINE B2 -137 58 2 3 1340 907 238 5 46 chr9 99084684 99084868 -24991304 + B3 SINE B2 25 203 -13 3 1340 1943 129 86 3 chr9 99084868 99085172 -24991000 + ORR1A4 LTR MaLR 1 329 0 3 1340 666 240 0 8 chr9 99085195 99085325 -24990847 + B1F1 SINE Alu 14 142 -7 3 1340 209 301 95 12 chr9 99085555 99085639 -24990533 + MIR SINE MIR 16 106 -102 3 1340 434 255 80 18 chr9 99085644 99085756 -24990416 - PB1D9 SINE Alu -1 119 1 3 1340 273 262 125 45 chr9 99085756 99085788 -24990384 - B4 SINE B4 -207 85 47 3 1340 564 183 17 34 chr9 99086169 99086288 -24989884 - PB1D9 SINE Alu -1 119 3 3 1340 327 309 14 78 chr9 99086464 99086642 -24989530 - PB1D10 SINE Alu 0 311 12 3 1340 556 194 3 61 chr9 99087375 99087508 -24988664 - B1_Mur1 SINE Alu 0 149 26 3 1340 317 329 178 12 chr9 99087508 99087543 -24988629 - B4 SINE B4 -38 253 58 3 1340 235 240 66 13 chr9 99087576 99087652 -24988520 - PB1D10 SINE Alu 0 117 38 3 1340 363 23 0 0 chr9 99088641 99088685 -24987487 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1340 275 204 350 0 chr9 99088695 99088798 -24987374 + B1_Mur3 SINE Alu 3 141 -8 3 1340 300 53 0 0 chr9 99088836 99088874 -24987298 + (CAA)n Simple_repeat Simple_repeat 1 38 0 3 1340 491 296 59 0 chr9 99089146 99089281 -24986891 - B1F SINE Alu -1 148 6 3 1340 216 351 0 39 chr9 99089218 99089295 -24986877 - B4A SINE B4 -139 153 80 3 1340 441 0 0 0 chr9 99089365 99089414 -24986758 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1340 451 220 36 9 chr9 99089437 99089547 -24986625 - PB1D10 SINE Alu 0 117 5 3 1340 810 238 89 5 chr9 99089582 99089772 -24986400 + B3 SINE B2 1 206 -10 3 1340 350 247 75 11 chr9 99089831 99089925 -24986247 + RSINE1 SINE B4 44 143 -22 3 1340 721 261 62 38 chr9 99089976 99090187 -24985985 + B3A SINE B2 1 216 0 3 1340 849 132 90 17 chr9 99090211 99090388 -24985784 + B2_Mm2 SINE B2 3 192 -3 3 1341 1209 96 73 0 chr9 99090484 99090637 -24985535 + B2_Mm2 SINE B2 1 153 -42 3 1341 495 0 0 0 chr9 99090637 99090692 -24985480 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1341 1209 96 73 0 chr9 99090692 99090715 -24985457 + B2_Mm2 SINE B2 154 189 -6 3 1341 372 387 89 30 chr9 99090960 99091197 -24984975 + LTR16A LTR ERVL 201 451 0 3 1341 570 222 130 76 chr9 99091513 99091698 -24984474 - B3A SINE B2 0 198 4 3 1341 956 81 0 0 chr9 99091720 99091843 -24984329 - B1_Mus2 SINE Alu -7 140 18 3 1341 256 119 71 0 chr9 99091916 99091958 -24984214 - PB1D10 SINE Alu -9 108 64 3 1341 270 0 0 0 chr9 99091977 99092007 -24984165 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1341 715 134 0 18 chr9 99092007 99092121 -24984051 - B1_Mur3 SINE Alu -11 138 27 3 1341 376 274 0 0 chr9 99092130 99092203 -24983969 - ID_B1 SINE B4 -70 154 82 3 1341 765 236 107 10 chr9 99092368 99092565 -24983607 + B3 SINE B2 1 216 0 3 1341 352 248 120 10 chr9 99092592 99092689 -24983483 + B1F2 SINE Alu 30 140 -9 3 1341 224 191 29 0 chr9 99092767 99092835 -24983337 + (CATA)n Simple_repeat Simple_repeat 1 70 0 3 1341 316 75 0 0 chr9 99092836 99092876 -24983296 + HAL1-3A_ME LINE L1 1978 2017 -841 3 1341 1144 268 74 95 chr9 99092962 99093022 -24983150 + L1MB2 LINE L1 5475 5520 -669 3 1341 316 256 12 49 chr9 99093022 99093104 -24983068 - ID4_ SINE ID -1 82 4 3 1341 1627 252 77 56 chr9 99093104 99093409 -24982763 + L1MB2 LINE L1 5514 5806 -383 3 1341 946 61 114 0 chr9 99093409 99093541 -24982631 - B1_Mm SINE Alu 0 147 1 3 1341 1627 251 77 56 chr9 99093541 99093825 -24982347 + L1MB2 LINE L1 5807 6111 -78 3 1341 670 250 0 7 chr9 99093832 99093973 -24982199 + ID_B1 SINE B4 85 224 0 3 1341 867 150 258 0 chr9 99094212 99094379 -24981793 + B3 SINE B2 3 212 -4 3 1341 4486 58 28 2 chr9 99094397 99094965 -24981207 + L1_Mus3 LINE L1 6055 6637 -1 3 1341 558 207 12 152 chr9 99095013 99095184 -24980988 - B1F SINE Alu -1 148 2 3 1341 312 294 246 19 chr9 99095222 99095437 -24980735 + L1MD3 LINE L1 5728 5991 -2004 3 1341 1877 194 70 52 chr9 99095441 99095842 -24980330 - MTD LTR MaLR 0 419 12 3 1341 2645 161 205 33 chr9 99095842 99095978 -24980194 + RMER19A LTR ERVK 1 167 -570 3 1341 747 262 135 39 chr9 99095978 99096311 -24979861 - RLTR9A LTR ERVK -2 366 2 3 1341 2645 161 205 33 chr9 99096311 99096803 -24979369 + RMER19A LTR ERVK 168 736 -1 3 1341 259 316 99 0 chr9 99096822 99096974 -24979198 + L1MD3 LINE L1 5995 6161 -172 3 1341 246 213 12 96 chr9 99097009 99097092 -24979080 + L1MD3 LINE L1 6226 6301 -32 3 1341 353 342 9 26 chr9 99097092 99097206 -24978966 + PB1D10 SINE Alu 1 112 -5 3 1341 357 329 32 77 chr9 99097233 99097378 -24978794 + ID_B1 SINE B4 72 209 -15 3 1341 183 42 0 0 chr9 99097378 99097402 -24978770 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 1341 569 294 22 7 chr9 99097431 99097568 -24978604 + RSINE1 SINE B4 15 153 -12 3 1341 315 0 0 0 chr9 99097570 99097605 -24978567 + (CCA)n Simple_repeat Simple_repeat 1 35 0 3 1341 225 0 0 0 chr9 99097605 99097630 -24978542 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3 1341 333 271 34 45 chr9 99097635 99097724 -24978448 + B3A SINE B2 3 90 -108 3 1341 24 85 0 0 chr9 99097790 99097849 -24978323 + AT_rich Low_complexity Low_complexity 1 59 0 3 1341 1127 42 42 0 chr9 99097869 99098011 -24978161 + B1_Mus1 SINE Alu 1 148 0 3 1341 318 283 71 0 chr9 99098042 99098141 -24978031 + PB1D7 SINE Alu 1 106 -14 3 1341 216 0 0 0 chr9 99098141 99098165 -24978007 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 3 1341 699 156 88 7 chr9 99098228 99098364 -24977808 + B1_Mur4 SINE Alu 2 148 -2 3 1341 271 180 0 39 chr9 99098393 99098445 -24977727 - PB1D10 SINE Alu -14 103 54 3 1341 544 283 31 19 chr9 99098844 99099006 -24977166 + RSINE1 SINE B4 2 165 0 3 1341 594 128 0 0 chr9 99099011 99099105 -24977067 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 1341 528 154 26 103 chr9 99099368 99099484 -24976688 - B1_Mus2 SINE Alu 0 147 41 4 1341 306 0 0 0 chr9 99100302 99100336 -24975836 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 4 1341 975 212 9 42 chr9 99100587 99100799 -24975373 - B3 SINE B2 -5 211 7 4 1341 494 278 40 0 chr9 99100954 99101105 -24975067 - MLT1D LTR MaLR -1 504 348 4 1341 504 360 73 68 chr9 99101103 99101375 -24974797 - MLT2B3 LTR ERVL -84 470 200 4 1341 573 15 0 0 chr9 99101375 99101441 -24974731 + (TTC)n Simple_repeat Simple_repeat 2 67 0 4 1341 504 360 73 68 chr9 99101441 99101636 -24974536 - MLT2B3 LTR ERVL -355 199 1 4 1341 651 120 44 1 chr9 99101666 99101794 -24974378 + B1_Mus2 SINE Alu 15 146 -1 4 1341 564 230 120 38 chr9 99101808 99101966 -24974206 + B3A SINE B2 27 197 -1 4 1341 379 306 9 9 chr9 99102169 99102278 -24973894 - PB1D10 SINE Alu -5 112 4 4 1341 238 384 9 18 chr9 99102187 99102301 -24973871 - ID_B1 SINE B4 -49 175 63 4 1341 303 319 19 84 chr9 99102292 99102446 -24973726 - MLT1D LTR MaLR -450 177 34 4 1341 210 306 26 53 chr9 99102456 99102532 -24973640 - MIR SINE MIR -159 103 30 4 1341 363 121 0 0 chr9 99102565 99102623 -24973549 + (CATA)n Simple_repeat Simple_repeat 2 59 0 4 1341 842 245 65 0 chr9 99102628 99102828 -24973344 - ID_B1 SINE B4 -9 215 3 4 1341 882 239 63 44 chr9 99102856 99103027 -24973145 - B3 SINE B2 -6 210 28 4 1341 1320 89 21 21 chr9 99103027 99103221 -24972951 - B2_Mm2 SINE B2 0 195 2 4 1341 882 239 63 44 chr9 99103221 99103255 -24972917 - B3 SINE B2 -189 27 1 4 1341 204 366 0 79 chr9 99103529 99103605 -24972567 + MIR SINE MIR 22 92 -170 4 1341 542 209 61 61 chr9 99103605 99103753 -24972419 - B1F2 SINE Alu 0 149 2 4 1341 204 366 0 79 chr9 99103753 99103777 -24972395 + MIR SINE MIR 93 114 -148 4 1341 1220 54 0 13 chr9 99103807 99103956 -24972216 - B1_Mus1 SINE Alu -1 147 1 4 1341 221 241 205 0 chr9 99103956 99104039 -24972133 + MIR SINE MIR 101 200 -62 4 1341 1366 72 0 32 chr9 99104039 99104225 -24971947 + B2_Mm2 SINE B2 2 181 -14 4 1341 701 77 19 0 chr9 99104304 99104408 -24971764 + (TCTCCC)n Simple_repeat Simple_repeat 1 106 0 4 1341 418 273 35 0 chr9 99104435 99104578 -24971594 - B1F2 SINE Alu 0 149 2 4 1341 500 208 167 0 chr9 99105571 99105691 -24970481 + B1_Mur2 SINE Alu 5 144 -5 4 1341 399 291 56 14 chr9 99105890 99106033 -24970139 - B1F SINE Alu 0 149 1 4 1341 510 239 43 50 chr9 99106050 99106191 -24969981 + ID_B1 SINE B4 85 224 0 4 1341 238 291 52 104 chr9 99106057 99106249 -24969923 - YREP_Mm Unknown Unknown -1498 314 133 4 1341 749 253 127 18 chr9 99106260 99106590 -24969582 - L1MC3 LINE L1 -141 7644 7279 4 1341 1670 212 69 89 chr9 99106590 99107129 -24969043 - MT2A LTR ERVL 0 533 6 4 1341 642 284 21 0 chr9 99107214 99107355 -24968817 + B1F1 SINE Alu 6 149 0 4 1341 1872 162 101 3 chr9 99107458 99107804 -24968368 + RLTR14 LTR ERV1 3 382 0 4 1341 285 312 62 0 chr9 99107808 99107904 -24968268 + ID_B1 SINE B4 123 224 0 4 1341 251 231 45 124 chr9 99108190 99108279 -24967893 - B1_Mur4 SINE Alu 0 150 69 4 1341 866 217 82 0 chr9 99108279 99108463 -24967709 - B3 SINE B2 -17 199 1 4 1341 471 113 0 0 chr9 99108479 99108550 -24967622 + (CTTA)n Simple_repeat Simple_repeat 1 71 0 4 1341 1181 69 0 0 chr9 99108550 99108695 -24967477 - B1_Mus2 SINE Alu -1 146 2 4 1341 24 32 0 0 chr9 99108695 99108726 -24967446 + AT_rich Low_complexity Low_complexity 1 31 0 4 1341 1031 17 0 0 chr9 99108727 99108847 -24967325 + ORR1A0 LTR MaLR 141 260 -86 4 1341 180 0 0 0 chr9 99109688 99109708 -24966464 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1341 4084 140 65 19 chr9 99109896 99110600 -24965572 - L1_Mur1 LINE L1 -109 5777 5041 4 1341 639 236 93 22 chr9 99110639 99110821 -24965351 - B3A SINE B2 -3 195 1 4 1341 731 156 202 6 chr9 99110845 99111013 -24965159 - B3 SINE B2 -11 205 5 4 1341 582 201 200 6 chr9 99111814 99111994 -24964178 - MTEb LTR MaLR 0 379 165 4 1341 1005 111 12 24 chr9 99111981 99112148 -24964024 - B2_Mm2 SINE B2 -23 172 8 4 1341 546 229 128 7 chr9 99112158 99112299 -24963873 - MTEb LTR MaLR -183 196 39 4 1341 413 285 76 49 chr9 99112393 99112537 -24963635 + B1_Mur1 SINE Alu 2 149 0 4 1341 249 98 0 0 chr9 99112545 99112586 -24963586 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1341 43 0 0 0 chr9 99112646 99112689 -24963483 + AT_rich Low_complexity Low_complexity 1 43 0 4 1341 553 248 60 0 chr9 99112851 99112984 -24963188 + B1_Mur1 SINE Alu 9 149 0 4 1341 758 208 153 0 chr9 99113011 99113194 -24962978 - B3 SINE B2 -5 211 1 4 1341 314 316 81 57 chr9 99113194 99113442 -24962730 - L1MEc LINE L1 -6009 391 138 4 1341 477 76 0 0 chr9 99113485 99113551 -24962621 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 4 1341 2211 113 9 21 chr9 99113590 99113916 -24962256 + ORR1A3 LTR MaLR 3 324 -2 4 1341 837 249 36 0 chr9 99113933 99114126 -24962046 - B3 SINE B2 -14 202 3 4 1341 585 278 34 17 chr9 99114152 99114331 -24961841 - B3A SINE B2 -16 182 1 4 1341 1154 120 48 9 chr9 99114409 99114619 -24961553 + ORR1B2 LTR MaLR 148 365 -2 4 1341 554 271 121 28 chr9 99114641 99114878 -24961294 - MTEa LTR MaLR -140 239 3 4 1341 282 313 84 0 chr9 99114913 99114996 -24961176 + B1F2 SINE Alu 2 91 -58 4 1341 293 118 0 19 chr9 99115387 99115439 -24960733 + (TCC)n Simple_repeat Simple_repeat 3 53 0 4 1341 292 248 152 4 chr9 99115441 99115533 -24960639 - PB1D10 SINE Alu -10 107 3 4 1341 584 242 98 0 chr9 99115551 99115704 -24960468 - L1MA5 LINE L1 -7 6293 6126 4 1341 406 249 97 85 chr9 99116325 99116361 -24959811 + B4 SINE B4 48 224 -67 4 1341 837 122 14 0 chr9 99116361 99116500 -24959672 + B1_Mus1 SINE Alu 6 146 -2 4 1341 468 0 0 0 chr9 99116501 99116553 -24959619 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1341 1246 256 80 9 chr9 99116626 99116965 -24959207 - ORR1D2 LTR MaLR -7 363 1 4 1341 924 129 233 6 chr9 99117164 99117336 -24958836 - B3 SINE B2 -5 211 1 4 1341 357 125 0 0 chr9 99117339 99117395 -24958777 + (TTA)n Simple_repeat Simple_repeat 2 57 0 4 1341 512 299 38 38 chr9 99117400 99117612 -24958560 - ID_B1 SINE B4 -11 213 2 4 1341 440 163 0 34 chr9 99117746 99117835 -24958337 - PB1D9 SINE Alu -8 112 27 4 1341 216 67 0 0 chr9 99117837 99117867 -24958305 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1341 330 284 55 0 chr9 99117868 99117977 -24958195 - L1MA5 LINE L1 -366 5937 5823 4 1341 183 42 0 0 chr9 99117979 99118003 -24958169 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1341 471 250 57 0 chr9 99118007 99118131 -24958041 - B1F2 SINE Alu 0 149 19 4 1341 252 23 47 0 chr9 99118172 99118215 -24957957 - B1_Mus2 SINE Alu 0 147 103 4 1341 3799 112 102 100 chr9 99118243 99119115 -24957057 - RMER21A LTR ERV1 -73 874 1 4 1341 549 122 152 10 chr9 99119119 99119218 -24956954 - B1_Mur4 SINE Alu -36 114 2 4 1341 622 299 113 72 chr9 99119229 99119279 -24956893 - L1MA5 LINE L1 -481 5819 5785 4 1341 881 100 179 48 chr9 99119279 99119447 -24956725 - B2_Mm2 SINE B2 -4 191 2 4 1341 711 279 133 43 chr9 99119447 99119555 -24956617 - L1MA5 LINE L1 -516 5784 5667 4 1341 2178 175 47 7 chr9 99119555 99119958 -24956214 + MTC LTR MaLR 1 419 -2 4 1341 711 278 134 41 chr9 99119958 99120099 -24956073 - L1MA5 LINE L1 -637 5666 5498 4 1341 415 238 0 0 chr9 99120099 99120179 -24955993 - ID4 SINE ID -2 81 2 4 1341 711 278 134 41 chr9 99120179 99120321 -24955851 - L1MA5 LINE L1 -806 5497 5358 4 1341 25 0 0 0 chr9 99121027 99121052 -24955120 + AT_rich Low_complexity Low_complexity 1 25 0 4 1341 905 260 98 78 chr9 99121093 99121452 -24954720 - MTE2a LTR MaLR -13 366 1 4 1341 304 294 29 0 chr9 99121492 99121594 -24954578 - L1M3 LINE L1 -1441 4699 4595 4 1341 303 250 25 141 chr9 99121629 99121750 -24954422 - PB1D10 SINE Alu -8 109 3 4 1341 3358 18 31 3 chr9 99121750 99122135 -24954037 + MTA_Mm LTR MaLR 1 396 0 4 1341 257 318 35 0 chr9 99122135 99122220 -24953952 - ID SINE ID -136 88 1 4 1341 286 321 36 0 chr9 99122303 99122440 -24953732 - L1M3 LINE L1 -1643 4500 4359 4 1341 189 0 0 0 chr9 99122441 99122462 -24953710 + (GTTTG)n Simple_repeat Simple_repeat 1 21 0 4 1341 503 200 192 0 chr9 99122465 99122585 -24953587 - B1_Mur2 SINE Alu -6 143 1 4 1341 225 0 0 0 chr9 99122866 99122891 -24953281 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 4 1341 763 62 259 0 chr9 99122893 99123005 -24953167 - B1_Mm SINE Alu -6 141 1 4 1341 200 31 0 59 chr9 99123269 99123303 -24952869 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 4 1341 1426 79 16 16 chr9 99123303 99123496 -24952676 - B2_Mm2 SINE B2 0 195 3 4 1341 3422 28 8 0 chr9 99123847 99124240 -24951932 - MTA_Mm LTR MaLR 0 396 1 4 1341 776 157 295 0 chr9 99124614 99124780 -24951392 - B3 SINE B2 -1 215 1 4 1341 26 0 0 0 chr9 99124788 99124814 -24951358 + AT_rich Low_complexity Low_complexity 1 26 0 4 1341 340 250 0 24 chr9 99124817 99124899 -24951273 - ID4_ SINE ID 0 83 4 4 1341 463 269 0 0 chr9 99125536 99125644 -24950528 - ID_B1 SINE B4 -5 219 112 4 1341 825 238 31 10 chr9 99125721 99125916 -24950256 - B4 SINE B4 -2 290 92 4 1341 452 71 57 0 chr9 99125922 99125992 -24950180 + MT2A LTR ERVL 3 76 -457 4 1341 252 184 0 0 chr9 99126001 99126050 -24950122 + CT-rich Low_complexity Low_complexity 1 49 0 4 1341 790 147 29 7 chr9 99126062 99126199 -24949973 - B1_Mur2 SINE Alu -8 141 2 4 1341 1598 232 36 34 chr9 99126201 99126572 -24949600 + MT2A LTR ERVL 75 456 -77 4 1341 234 0 0 0 chr9 99126572 99126598 -24949574 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1341 1598 232 36 34 chr9 99126598 99126671 -24949501 + MT2A LTR ERVL 457 519 -14 4 1341 257 227 12 62 chr9 99126710 99126790 -24949382 - B4 SINE B4 -215 77 2 4 1341 255 79 0 0 chr9 99127010 99127048 -24949124 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 4 1341 373 292 58 0 chr9 99127424 99127544 -24948628 + MER3 DNA MER1_type 3 129 -80 4 1341 742 177 7 28 chr9 99127545 99127690 -24948482 - B1_Mur3 SINE Alu -7 142 1 5 1341 2646 80 11 3 chr9 99127700 99128051 -24948121 - IAPEY2_LTR LTR ERVK -3 354 1 5 1341 1132 82 0 7 chr9 99128186 99128333 -24947839 - B1_Mus2 SINE Alu 0 147 2 5 1341 22 56 0 0 chr9 99129450 99129486 -24946686 + AT_rich Low_complexity Low_complexity 1 36 0 5 1341 527 283 50 7 chr9 99129509 99129648 -24946524 + RSINE1 SINE B4 2 146 -19 5 1341 26 0 0 0 chr9 99129667 99129693 -24946479 + AT_rich Low_complexity Low_complexity 1 26 0 5 1341 293 218 28 3 chr9 99130239 99130316 -24945856 - PB1D10 SINE Alu 0 127 41 5 1341 948 163 28 22 chr9 99130353 99130535 -24945637 - B2_Mm2 SINE B2 -9 186 4 5 1341 234 0 0 0 chr9 99130588 99130614 -24945558 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1341 1132 75 0 0 chr9 99130614 99130760 -24945412 - B1_Mus2 SINE Alu 0 147 2 5 1341 225 298 50 58 chr9 99130969 99131090 -24945082 - PB1D7 SINE Alu 0 120 1 5 1341 23 33 0 0 chr9 99131122 99131152 -24945020 + AT_rich Low_complexity Low_complexity 1 30 0 5 1341 1242 161 5 9 chr9 99131241 99131461 -24944711 + URR1B DNA MER1_type 1 219 -6 5 1341 520 148 0 22 chr9 99131933 99132023 -24944149 + B1_Mur4 SINE Alu 63 150 0 5 1341 216 0 0 0 chr9 99132181 99132205 -24943967 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 1341 1313 19 0 0 chr9 99132412 99132573 -24943599 + B2_Mm2 SINE B2 1 161 -34 5 1341 204 40 0 0 chr9 99132573 99132598 -24943574 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 1341 213 325 25 25 chr9 99132671 99132750 -24943422 + ID_B1 SINE B4 79 157 -67 5 1341 303 236 68 14 chr9 99132679 99132752 -24943420 + PB1D7 SINE Alu 5 81 -39 5 1341 559 151 9 19 chr9 99132976 99133084 -24943088 - B3 SINE B2 -2 214 108 5 1341 345 184 23 0 chr9 99133103 99133181 -24942991 + B1F2 SINE Alu 3 87 -62 5 1341 586 141 10 0 chr9 99133173 99133272 -24942900 - B1_Mur2 SINE Alu -33 116 17 5 1341 563 221 79 59 chr9 99133299 99133501 -24942671 - B3 SINE B2 -10 206 1 5 1341 238 211 26 90 chr9 99133826 99133904 -24942268 - ID4 SINE ID -9 74 2 5 1341 1240 214 72 72 chr9 99134158 99134520 -24941652 + Lx7 LINE L1 7100 7461 -235 5 1341 338 264 0 58 chr9 99134533 99134670 -24941502 + Lx7 LINE L1 7565 7693 -3 5 1341 1197 62 0 0 chr9 99135034 99135180 -24940992 + B1_Mus2 SINE Alu 1 146 -1 5 1341 1750 166 18 77 chr9 99135245 99135412 -24940760 + ORR1C2 LTR MaLR 17 164 -220 5 1341 1311 53 58 6 chr9 99135412 99135583 -24940589 + B2_Mm2 SINE B2 1 180 -15 5 1341 195 42 0 0 chr9 99135585 99135609 -24940563 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1341 1750 166 18 77 chr9 99135609 99135829 -24940343 + ORR1C2 LTR MaLR 165 384 0 5 1341 523 184 111 8 chr9 99135895 99136021 -24940151 + B1_Mur1 SINE Alu 2 140 -9 5 1341 944 224 19 28 chr9 99136199 99136415 -24939757 + B3 SINE B2 2 215 -1 5 1341 610 167 0 67 chr9 99136440 99136575 -24939597 + B1_Mur2 SINE Alu 3 128 -21 5 1341 238 146 89 3 chr9 99136873 99136940 -24939232 - PB1D10 SINE Alu 0 149 59 5 1341 697 272 9 22 chr9 99136947 99137176 -24938996 + L1MA4 LINE L1 5716 5941 -359 5 1341 285 98 0 0 chr9 99137200 99137241 -24938931 + (CCA)n Simple_repeat Simple_repeat 3 43 0 5 1341 606 312 23 0 chr9 99138160 99138333 -24937839 - MLT1A1 LTR MaLR -229 179 3 5 1341 250 272 88 145 chr9 99138558 99138786 -24937386 - ORR1E LTR MaLR -44 315 101 5 1341 286 255 98 0 chr9 99138861 99138963 -24937209 - Ricksha_c DNA MuDR -1581 467 356 5 1341 482 285 36 18 chr9 99139244 99139412 -24936760 + MLT1A1 LTR MaLR 229 399 -9 5 1341 3338 148 20 22 chr9 99139672 99140321 -24935851 - RMER6A LTR ERVK 0 756 109 5 1341 426 53 0 0 chr9 99141405 99141462 -24934710 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 5 1341 831 179 14 0 chr9 99141462 99141602 -24934570 - B1_Mus1 SINE Alu -6 142 1 5 1341 1223 61 0 0 chr9 99141961 99142108 -24934064 + B1_Mus2 SINE Alu 1 147 0 5 1341 248 195 25 49 chr9 99142169 99142250 -24933922 + MLT1A1 LTR MaLR 501 579 -31 5 1341 808 241 51 14 chr9 99142828 99143043 -24933129 - ID_B1 SINE B4 -1 223 1 5 1341 403 303 64 13 chr9 99143093 99143250 -24932922 - MER5B DNA MER1_type -3 175 11 5 1341 244 161 143 0 chr9 99144465 99144521 -24931651 - B4 SINE B4 -28 264 201 5 1341 221 266 92 58 chr9 99144564 99144598 -24931574 - B3A SINE B2 -72 126 3 5 1341 267 247 116 12 chr9 99144598 99144684 -24931488 - RSINE1 SINE B4 -67 98 4 5 1341 292 286 87 48 chr9 99144834 99144937 -24931235 - PB1D10 SINE Alu -10 107 1 5 1341 313 247 73 12 chr9 99144860 99144942 -24931230 - ID_B1 SINE B4 -60 164 78 5 1341 197 33 33 0 chr9 99144953 99144983 -24931189 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 5 1341 694 136 24 2 chr9 99144983 99145117 -24931055 - B1_Mur3 SINE Alu 0 149 1 5 1341 240 257 128 107 chr9 99145117 99145172 -24931000 - B4A SINE B4 -200 92 34 5 1341 188 184 0 20 chr9 99145350 99145400 -24930772 + T-rich Low_complexity Low_complexity 2 50 0 5 1341 682 237 0 14 chr9 99145412 99145553 -24930619 - B1_Mur2 SINE Alu -5 144 6 5 1341 582 229 63 6 chr9 99145578 99145736 -24930436 - B3A SINE B2 -22 176 10 5 1341 809 151 70 21 chr9 99145768 99145910 -24930262 - B1_Mur2 SINE Alu 0 149 1 5 1341 255 230 159 11 chr9 99145912 99146000 -24930172 - PB1D10 SINE Alu -1 116 16 5 1341 811 234 134 28 chr9 99147953 99148243 -24927929 + MTE2b LTR MaLR 1 321 -58 5 1341 607 197 88 36 chr9 99148249 99148386 -24927786 - B1_Mur2 SINE Alu -1 148 5 5 1341 278 171 301 12 chr9 99148417 99148500 -24927672 + PB1D10 SINE Alu 11 117 0 5 1341 323 230 11 22 chr9 99148598 99148687 -24927485 - RSINE1 SINE B4 -76 89 2 5 1341 379 70 0 17 chr9 99148687 99148742 -24927430 + MTE2b LTR MaLR 324 377 -2 5 1341 270 89 22 22 chr9 99149179 99149225 -24926947 - B1_Mus1 SINE Alu -101 47 2 5 1341 318 180 0 0 chr9 99149235 99149296 -24926876 + T-rich Low_complexity Low_complexity 4 64 0 5 1341 626 211 16 0 chr9 99149296 99149424 -24926748 - ID_B1 SINE B4 0 224 95 5 1341 262 194 83 0 chr9 99149425 99149497 -24926675 - L1MC5 LINE L1 -883 7078 7001 5 1341 257 295 0 7 chr9 99149498 99149589 -24926583 - ID4 SINE ID -62 90 2 5 1341 698 161 8 0 chr9 99149730 99149854 -24926318 - B1_Mus1 SINE Alu -23 125 1 5 1341 597 199 66 44 chr9 99149865 99150002 -24926170 - B1_Mur2 SINE Alu 0 149 10 5 1341 1444 64 37 0 chr9 99150019 99150206 -24925966 - B2_Mm2 SINE B2 0 195 2 5 1341 591 296 11 32 chr9 99150253 99150438 -24925734 - B3A SINE B2 -16 182 2 5 1341 471 238 33 0 chr9 99150441 99150563 -24925609 - B3A SINE B2 -72 126 1 5 1341 528 245 330 54 chr9 99150731 99151025 -24925147 + MTE2b LTR MaLR 1 375 -4 5 1341 231 262 33 0 chr9 99151082 99151143 -24925029 - tRNA-Ala-GCY_ tRNA tRNA -12 63 1 5 1341 222 37 0 0 chr9 99151545 99151572 -24924600 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1341 353 179 15 0 chr9 99151572 99151639 -24924533 + MTD LTR MaLR 11 78 -343 5 1341 257 233 24 32 chr9 99151640 99151764 -24924408 + T-rich Low_complexity Low_complexity 4 126 0 5 1341 563 189 275 4 chr9 99151768 99152028 -24924144 + MTD LTR MaLR 87 416 -3 5 1341 390 200 0 0 chr9 99152028 99152101 -24924071 - PB1D7 SINE Alu -34 86 14 5 1341 526 276 52 23 chr9 99152462 99152636 -24923536 - ID_B1 SINE B4 -9 215 37 5 1341 579 184 23 39 chr9 99153629 99153759 -24922413 + B1_Mm SINE Alu 2 129 -18 5 1341 267 103 0 0 chr9 99153798 99153837 -24922335 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1341 205 70 22 44 chr9 99154004 99154049 -24922123 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1341 801 161 88 0 chr9 99154054 99154191 -24921981 - B1_Mur3 SINE Alu 0 149 1 5 1341 389 219 24 12 chr9 99154270 99154353 -24921819 - B1_Mus2 SINE Alu -62 85 2 5 1341 511 265 65 12 chr9 99154466 99154634 -24921538 - ID_B1 SINE B4 -46 178 2 5 1341 769 262 0 12 chr9 99154892 99155054 -24921118 + B3A SINE B2 1 160 -38 5 1341 594 204 56 72 chr9 99155153 99155348 -24920824 - B3A SINE B2 -2 196 5 5 1341 313 301 171 85 chr9 99155413 99155671 -24920501 + B4A SINE B4 5 284 -8 5 1341 775 215 21 48 chr9 99156232 99156418 -24919754 - B3A SINE B2 -17 181 1 5 1341 424 259 28 0 chr9 99156436 99156544 -24919628 - PB1D9 SINE Alu -8 112 2 5 1341 192 25 100 0 chr9 99156553 99156593 -24919579 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1341 288 226 0 0 chr9 99156624 99156686 -24919486 - RLTR20D LTR ERVK -94 484 423 5 1341 332 289 71 81 chr9 99156672 99156883 -24919289 - RLTR20D LTR ERVK -281 287 79 5 1341 253 204 0 0 chr9 99156960 99157009 -24919163 - B1_Mur3 SINE Alu -6 143 95 5 1341 270 0 0 0 chr9 99157009 99157039 -24919133 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1341 982 62 0 0 chr9 99157053 99157183 -24918989 - B1_Mus2 SINE Alu 0 147 18 5 1341 486 235 10 0 chr9 99157181 99157283 -24918889 - B1_Mur3 SINE Alu -46 103 1 5 1341 328 316 121 44 chr9 99157418 99157600 -24918572 + B3A SINE B2 2 197 -1 5 1341 647 200 44 0 chr9 99157667 99157802 -24918370 + B3 SINE B2 73 213 -3 5 1341 8628 130 106 11 chr9 99157862 99159067 -24917105 + RLTR22_Mur LTR ERVK 1 1326 -522 5 1341 450 0 0 0 chr9 99159067 99159117 -24917055 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1341 8628 130 106 11 chr9 99159117 99159599 -24916573 + RLTR22_Mur LTR ERVK 1327 1847 -1 5 1341 1133 62 0 7 chr9 99159648 99159794 -24916378 + B1_Mm SINE Alu 3 147 0 5 1341 203 147 0 0 chr9 99159877 99159911 -24916261 + (CCCTG)n Simple_repeat Simple_repeat 4 37 0 6 1341 615 233 22 8 chr9 99162276 99162410 -24913762 + B1_Mur1 SINE Alu 1 136 -13 6 1341 342 0 0 0 chr9 99163151 99163189 -24912983 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1341 1080 220 14 5 chr9 99163465 99163675 -24912497 - B3 SINE B2 -4 212 1 6 1341 643 240 92 12 chr9 99164497 99164680 -24911492 - B3A SINE B2 -14 181 2 6 1341 1520 163 37 7 chr9 99165095 99165391 -24910781 + MTC LTR MaLR 109 413 -8 6 1341 214 352 22 94 chr9 99166709 99166847 -24909325 - B4A SINE B4 -119 173 46 6 1341 418 269 88 58 chr9 99166867 99167127 -24909045 + L1M2 LINE L1 4447 4714 -1429 6 1341 4476 8 2 12 chr9 99167132 99167630 -24908542 - MT2_Mm LTR ERVL 0 493 1 6 1341 321 0 0 0 chr9 99167630 99167668 -24908504 - MERVL-int LTR ERVL 0 5485 5448 6 1341 362 167 46 35 chr9 99167668 99167755 -24908417 - ORR1A3-int LTR MaLR -1323 640 553 6 1341 41595 14 14 0 chr9 99167755 99173042 -24903130 - MERVL-int LTR ERVL -125 5360 1 6 1341 4476 8 2 12 chr9 99173042 99173540 -24902632 - MT2_Mm LTR ERVL 0 493 1 6 1341 961 243 142 52 chr9 99173564 99173597 -24902575 + L1M2 LINE L1 4739 4771 -1372 6 1341 1508 49 16 5 chr9 99173597 99173783 -24902389 + B2_Mm2 SINE B2 2 189 -6 6 1341 961 246 144 51 chr9 99173783 99174221 -24901951 + L1M2 LINE L1 4753 5221 -922 6 1341 963 117 0 7 chr9 99174221 99174367 -24901805 + B1_Mm SINE Alu 1 145 -2 6 1341 432 0 0 0 chr9 99174371 99174419 -24901753 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 6 1341 944 286 177 32 chr9 99174419 99174787 -24901385 + L1M2 LINE L1 5212 5631 -216 6 1341 25 0 0 0 chr9 99175378 99175403 -24900769 + AT_rich Low_complexity Low_complexity 1 25 0 6 1341 1422 66 44 0 chr9 99175574 99175756 -24900416 - B2_Mm2 SINE B2 -5 190 1 6 1341 308 200 13 0 chr9 99176294 99176369 -24899803 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 1341 963 214 55 25 chr9 99176409 99176610 -24899562 - B3 SINE B2 -9 207 1 6 1341 569 211 0 17 chr9 99176662 99176778 -24899394 + PB1D9 SINE Alu 6 119 -1 6 1341 213 39 0 0 chr9 99176840 99176866 -24899306 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1341 285 215 15 15 chr9 99176868 99176934 -24899238 - B3A SINE B2 -118 80 15 6 1341 416 303 98 7 chr9 99177139 99177282 -24898890 - B3A SINE B2 -18 180 25 6 1341 800 236 22 0 chr9 99177291 99177473 -24898699 + B3A SINE B2 2 187 -11 6 1341 901 177 75 99 chr9 99177500 99177713 -24898459 - B3 SINE B2 -8 208 1 6 1341 33 0 0 0 chr9 99177865 99177898 -24898274 + AT_rich Low_complexity Low_complexity 1 33 0 6 1341 691 246 66 49 chr9 99178842 99179128 -24897044 - B4 SINE B4 0 292 2 6 1341 938 274 20 41 chr9 99179174 99179467 -24896705 + B4A SINE B4 2 288 -4 6 1341 28 0 0 0 chr9 99179773 99179801 -24896371 + AT_rich Low_complexity Low_complexity 1 28 0 6 1341 448 282 42 5 chr9 99179801 99179990 -24896182 - L1MA7 LINE L1 -10 6281 6086 6 1341 820 200 182 12 chr9 99180435 99180688 -24895484 - MTD LTR MaLR 0 419 124 6 1341 713 146 99 8 chr9 99180754 99180885 -24895287 + B1_Mur3 SINE Alu 7 149 0 6 1341 281 183 16 16 chr9 99180885 99180946 -24895226 - MTD LTR MaLR -358 61 1 6 1341 820 216 73 25 chr9 99181138 99181342 -24894830 + B3 SINE B2 1 214 -2 6 1341 298 282 18 4 chr9 99181618 99181734 -24894438 + PB1D10 SINE Alu 2 120 0 6 1341 198 91 0 0 chr9 99181737 99181770 -24894402 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1341 1723 261 124 47 chr9 99181886 99182548 -24893624 - Lx8 LINE L1 -655 6818 6106 6 1341 249 226 48 16 chr9 99183145 99183208 -24892964 - ID4 SINE ID -2 81 17 6 1341 1665 16 0 25 chr9 99183320 99183518 -24892654 - B2_Mm1a SINE B2 0 193 1 6 1341 186 71 0 0 chr9 99185174 99185202 -24890970 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1341 876 144 8 0 chr9 99187984 99188116 -24888056 - RMER16-int LTR ERVK -1427 3979 3847 6 1341 401 147 10 31 chr9 99188143 99188241 -24887931 + CT-rich Low_complexity Low_complexity 2 97 0 6 1341 180 0 0 0 chr9 99188254 99188274 -24887898 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1341 1139 246 43 97 chr9 99189892 99190265 -24885907 + ORR1E LTR MaLR 1 353 -6 6 1341 641 182 23 12 chr9 99190620 99190792 -24885380 + CT-rich Low_complexity Low_complexity 3 176 0 6 1341 504 154 0 0 chr9 99190793 99190871 -24885301 - B1_Mur4 SINE Alu -62 88 11 6 1341 27 0 0 0 chr9 99191759 99191786 -24884386 + AT_rich Low_complexity Low_complexity 1 27 0 6 1341 593 241 14 0 chr9 99192240 99192381 -24883791 - B1_Mur1 SINE Alu 0 149 7 6 1341 306 162 0 0 chr9 99193086 99193160 -24883012 + T-rich Low_complexity Low_complexity 1 74 0 6 1341 1127 82 7 0 chr9 99193160 99193306 -24882866 - B1_Mus2 SINE Alu 0 147 1 6 1341 1360 89 16 21 chr9 99193306 99193499 -24882673 - B2_Mm2 SINE B2 0 195 3 6 1341 918 117 88 0 chr9 99193504 99193641 -24882531 - B1_Mur3 SINE Alu 0 149 1 6 1341 770 181 29 0 chr9 99194775 99194913 -24881259 - B1_Mur1 SINE Alu -6 143 2 6 1341 1509 251 91 43 chr9 99194994 99195598 -24880574 - L1MA6 LINE L1 -134 6166 5534 6 1341 556 247 62 99 chr9 99195622 99195772 -24880400 + L1MB7 LINE L1 5884 6039 -145 6 1341 709 246 37 50 chr9 99195772 99195990 -24880182 - B3 SINE B2 0 216 2 6 1341 556 247 62 99 chr9 99195990 99196131 -24880041 + L1MB7 LINE L1 6040 6164 -20 6 1341 277 187 45 45 chr9 99196927 99197039 -24879133 + (TTGGGG)n Simple_repeat Simple_repeat 3 114 0 6 1341 272 308 33 0 chr9 99197049 99197140 -24879032 - ID_B1 SINE B4 -40 184 91 6 1341 716 170 19 64 chr9 99197199 99197356 -24878816 + ID_B1 SINE B4 8 157 -67 6 1341 445 278 43 60 chr9 99197357 99197541 -24878631 + B3A SINE B2 2 182 -16 6 1341 254 239 56 0 chr9 99197588 99197659 -24878513 + ID_B1 SINE B4 146 220 -4 6 1341 243 126 128 75 chr9 99197667 99197761 -24878411 + B2_Mm2 SINE B2 2 100 -95 6 1341 395 216 23 0 chr9 99198197 99198285 -24877887 - B1_Mur2 SINE Alu -42 107 18 6 1341 188 111 28 0 chr9 99198568 99198604 -24877568 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1341 412 207 8 8 chr9 99198605 99198722 -24877450 + (TA)n Simple_repeat Simple_repeat 2 118 0 6 1341 696 193 209 6 chr9 99199208 99199385 -24876787 - B3 SINE B2 -2 214 2 6 1341 26 30 0 0 chr9 99200343 99200376 -24875796 + AT_rich Low_complexity Low_complexity 1 33 0 6 1341 1438 135 9 9 chr9 99201254 99201478 -24874694 - URR1B DNA MER1_type 0 225 2 6 1341 753 235 11 43 chr9 99201643 99201830 -24874342 - B3A SINE B2 -16 182 2 6 1341 342 0 0 0 chr9 99201857 99201895 -24874277 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1341 347 264 129 24 chr9 99201906 99202030 -24874142 - ID_B1 SINE B4 -9 215 79 6 1341 562 296 18 54 chr9 99202074 99202242 -24873930 + B3A SINE B2 1 162 -36 6 1341 1230 41 7 0 chr9 99202432 99202579 -24873593 - B1_Mus1 SINE Alu 0 148 1 6 1341 22 56 0 0 chr9 99202716 99202752 -24873420 + AT_rich Low_complexity Low_complexity 1 36 0 6 1341 1151 188 112 74 chr9 99202807 99203146 -24873026 + ORR1D2 LTR MaLR 5 356 -14 6 1341 32 26 0 0 chr9 99203191 99203230 -24872942 + AT_rich Low_complexity Low_complexity 1 39 0 6 1341 245 219 110 0 chr9 99203240 99203322 -24872850 - L1M5 LINE L1 -3515 2631 2541 6 1341 285 98 0 0 chr9 99203462 99203503 -24872669 + (TTA)n Simple_repeat Simple_repeat 1 41 0 6 1341 571 217 9 9 chr9 99203505 99203621 -24872551 - PB1D9 SINE Alu -4 116 1 6 1341 1208 41 7 0 chr9 99203641 99203786 -24872386 - B1_Mus2 SINE Alu 0 147 2 6 1341 348 229 146 0 chr9 99203818 99203914 -24872258 - RSINE1 SINE B4 0 165 56 6 1341 1407 157 196 18 chr9 99206744 99207081 -24869091 + MTB_Mm LTR MaLR 1 397 -10 6 1341 225 240 151 40 chr9 99207237 99207363 -24868809 - L1M5 LINE L1 -1779 4367 4228 6 1341 1182 150 55 27 chr9 99208686 99208905 -24867267 - URR1B DNA MER1_type 0 225 1 6 1341 833 204 7 0 chr9 99208996 99209143 -24867029 - B1_Mur3 SINE Alu -1 148 1 6 1341 767 291 174 18 chr9 99209572 99209885 -24866287 + ORR1D2 LTR MaLR 1 362 -8 6 1341 706 293 48 34 chr9 99210100 99210379 -24865793 + B4 SINE B4 3 292 0 6 1341 528 117 51 41 chr9 99210546 99210644 -24865528 - B1_Mus2 SINE Alu 0 147 49 6 1341 446 220 28 0 chr9 99210960 99211069 -24865103 - PB1D9 SINE Alu -5 115 4 6 1341 463 239 169 63 chr9 99212528 99212765 -24863407 - Lx8 LINE L1 -3 7470 7209 6 1341 414 0 0 0 chr9 99212784 99212830 -24863342 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 6 1341 582 205 17 8 chr9 99212906 99213024 -24863148 + B1_Mur1 SINE Alu 31 149 0 6 1341 2449 42 0 0 chr9 99213070 99213357 -24862815 + L1Md_T LINE L1 5300 5586 -297 6 1341 8301 51 0 0 chr9 99213357 99214353 -24861819 + L1Md_T LINE L1 5587 6582 0 6 1341 6558 45 4 2 chr9 99214349 99215150 -24861022 + L1Md_F3 LINE L1 5783 6584 0 6 1341 696 238 17 23 chr9 99216472 99216644 -24859528 + B3A SINE B2 13 183 -15 6 1341 272 241 72 0 chr9 99219126 99219209 -24856963 + U13 snRNA snRNA 4 92 -16 6 1341 396 119 41 61 chr9 99219661 99219759 -24856413 + RLTR40 LTR ERVK 61 156 -661 6 1341 1627 47 0 0 chr9 99220902 99221094 -24855078 - B2_Mm1a SINE B2 0 193 2 6 1342 326 273 45 56 chr9 99223328 99223454 -24852718 - MER20B DNA MER1_type -2 217 89 6 1342 394 322 92 27 chr9 99226003 99226297 -24849875 + L1MC4a LINE L1 5583 5895 -1987 6 1342 1707 279 154 17 chr9 99226359 99227111 -24849061 + Lx8 LINE L1 6152 7006 -467 6 1342 264 219 45 45 chr9 99227111 99227178 -24848994 + RLTR25A LTR ERVK 510 576 -527 6 1342 746 88 0 0 chr9 99227120 99227222 -24848950 + B1_Mus2 SINE Alu 46 147 0 6 1342 192 188 62 0 chr9 99228131 99228179 -24847993 + MIRc SINE MIR 77 127 -141 6 1342 196 158 26 0 chr9 99228979 99229017 -24847155 + L2b LINE L2 3317 3355 -20 7 1342 1404 261 105 16 chr9 99229026 99229540 -24846632 + Lx8 LINE L1 6907 7466 -7 7 1342 1257 241 120 19 chr9 99230410 99230778 -24845394 + MTD LTR MaLR 1 405 -14 7 1342 4902 168 120 31 chr9 99233489 99234559 -24841613 + Lx4B LINE L1 5877 7041 -17 7 1342 575 27 0 14 chr9 99234561 99234635 -24841537 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 1342 452 243 174 16 chr9 99235162 99235346 -24840826 + B3 SINE B2 1 213 -3 7 1342 241 292 0 0 chr9 99235512 99235560 -24840612 - ID4_ SINE ID -2 81 34 7 1342 257 282 32 30 chr9 99235871 99235982 -24840190 - MIRb SINE MIR -82 186 72 7 1342 252 286 202 0 chr9 99237506 99237590 -24838582 - RSINE1 SINE B4 0 165 65 7 1342 337 252 24 97 chr9 99238454 99238599 -24837573 - MIRc SINE MIR -83 185 50 7 1342 237 267 84 56 chr9 99240661 99240768 -24835404 + MER5B DNA MER1_type 59 168 -10 7 1342 1314 91 32 0 chr9 99241272 99241459 -24834713 + B2_Mm2 SINE B2 2 194 -1 7 1342 276 213 3 37 chr9 99241738 99241813 -24834359 - MTEb LTR MaLR -21 358 287 7 1342 285 293 155 0 chr9 99242033 99242149 -24834023 - B1F SINE Alu -1 148 15 7 1342 1585 175 90 9 chr9 99242492 99242826 -24833346 + Lx9 LINE L1 6801 7161 -483 7 1342 405 0 0 0 chr9 99242843 99242888 -24833284 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1342 443 247 118 0 chr9 99242910 99243003 -24833169 - B4A SINE B4 -18 274 171 7 1342 839 200 37 24 chr9 99243001 99243165 -24833007 + B3 SINE B2 51 216 0 7 1342 392 281 107 101 chr9 99243675 99243853 -24832319 - B3A SINE B2 -18 180 2 7 1342 492 280 39 23 chr9 99243913 99244041 -24832131 + RSINE1 SINE B4 2 131 -34 7 1342 405 90 0 0 chr9 99244052 99244119 -24832053 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1342 202 314 0 14 chr9 99244233 99244304 -24831868 + C-rich Low_complexity Low_complexity 4 73 0 7 1342 1579 287 92 31 chr9 99244442 99245461 -24830711 - L1Md_F3 LINE L1 -658 5926 4870 7 1342 203 273 12 38 chr9 99245497 99245577 -24830595 + (CATG)n Simple_repeat Simple_repeat 1 78 0 7 1342 378 0 0 0 chr9 99246096 99246138 -24830034 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1342 520 215 43 0 chr9 99247007 99247100 -24829072 - RSINE1 SINE B4 -39 126 30 7 1342 294 29 0 0 chr9 99247557 99247592 -24828580 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1342 357 279 48 9 chr9 99247889 99247994 -24828178 - PB1D10 SINE Alu -8 109 1 7 1342 209 279 16 16 chr9 99248266 99248328 -24827844 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1342 888 238 28 32 chr9 99248380 99248407 -24827765 - B3 SINE B2 0 216 193 7 1342 297 0 0 0 chr9 99248407 99248440 -24827732 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1342 888 238 28 32 chr9 99248440 99248629 -24827543 - B3 SINE B2 -24 192 1 7 1342 857 261 74 9 chr9 99248629 99248843 -24827329 - B4A SINE B4 -64 228 1 7 1342 1821 232 72 32 chr9 99249056 99249205 -24826967 + Lx8 LINE L1 6777 6921 -552 7 1342 1231 55 0 0 chr9 99249205 99249351 -24826821 - B1_Mus1 SINE Alu 0 148 3 7 1342 1821 232 72 32 chr9 99249351 99249726 -24826446 + Lx8 LINE L1 6922 7322 -151 7 1342 908 319 60 55 chr9 99249730 99250364 -24825808 + Lx8 LINE L1 6837 7473 0 7 1342 226 216 68 58 chr9 99250373 99250476 -24825696 + Lx8 LINE L1 7364 7467 -6 7 1342 1157 181 33 28 chr9 99250631 99250842 -24825330 - B3 SINE B2 -3 213 2 7 1342 851 200 119 16 chr9 99251246 99251439 -24824733 + B3 SINE B2 4 216 0 7 1342 787 260 143 46 chr9 99251661 99252209 -24823963 + L1MA5 LINE L1 5319 5959 -197 7 1342 3218 48 5 10 chr9 99252501 99252899 -24823273 + MTA_Mm LTR MaLR 1 396 0 7 1342 22 0 0 0 chr9 99252945 99252967 -24823205 + AT_rich Low_complexity Low_complexity 1 22 0 7 1342 259 319 43 0 chr9 99253386 99253480 -24822692 + MLT1A1 LTR MaLR 50 147 -261 7 1342 356 310 33 33 chr9 99253484 99253604 -24822568 + ORR1E LTR MaLR 60 179 -180 7 1342 267 266 9 96 chr9 99254404 99254521 -24821651 + L2c LINE L2 3247 3381 -6 7 1342 521 293 0 24 chr9 99256010 99256136 -24820036 - ID_B1 SINE B4 -2 222 100 7 1342 580 287 148 40 chr9 99257301 99257653 -24818519 + MLT1B LTR MaLR 1 390 0 7 1342 496 241 60 26 chr9 99259933 99260108 -24816064 + B3A SINE B2 1 184 -9 7 1342 230 315 53 18 chr9 99260247 99260360 -24815812 - MER103 DNA DNA -48 118 2 7 1342 186 323 140 0 chr9 99260783 99260876 -24815296 + L2b LINE L2 2973 3078 -297 7 1342 432 283 121 21 chr9 99261303 99261444 -24814728 + B4A SINE B4 70 224 -68 7 1342 297 0 0 0 chr9 99261559 99261592 -24814580 + (CATA)n Simple_repeat Simple_repeat 1 33 0 7 1342 243 165 11 23 chr9 99261687 99261774 -24814398 + (CA)n Simple_repeat Simple_repeat 1 86 0 7 1342 192 405 12 19 chr9 99262462 99262623 -24813549 + MIR SINE MIR 51 210 -52 7 1342 470 318 31 87 chr9 99262788 99262984 -24813188 - ID_B1 SINE B4 -4 220 36 7 1342 296 313 38 9 chr9 99263026 99263182 -24812990 - L1MB2 LINE L1 -84 6099 5941 7 1342 503 246 8 32 chr9 99263286 99263412 -24812760 - PB1 SINE Alu 0 127 5 7 1342 393 22 0 0 chr9 99263433 99263479 -24812693 + (TTG)n Simple_repeat Simple_repeat 2 47 0 7 1342 1220 28 14 0 chr9 99264345 99264489 -24811683 + B1_Mm SINE Alu 1 146 -1 7 1342 197 33 33 0 chr9 99264489 99264519 -24811653 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1342 248 295 18 71 chr9 99264816 99264929 -24811243 + RMER20B LTR ERVK 482 588 -39 7 1342 561 329 138 30 chr9 99264957 99265318 -24810854 - L1M5 LINE L1 -2733 3413 3014 7 1342 1237 90 73 6 chr9 99265351 99265529 -24810643 - B2_Mm2 SINE B2 -3 192 3 7 1342 1156 168 127 25 chr9 99265937 99266181 -24809991 + MTD LTR MaLR 1 269 -150 7 1342 1647 281 35 20 chr9 99266181 99266773 -24809399 - Lx8 LINE L1 -826 6647 6025 7 1342 675 223 120 0 chr9 99266919 99267094 -24809078 - B3 SINE B2 -19 197 2 7 1342 690 185 0 0 chr9 99267308 99267443 -24808729 + T-rich Low_complexity Low_complexity 3 137 0 7 1342 313 307 128 28 chr9 99267444 99267460 -24808712 - CYRA11_Mm Unknown Y-chromosome -213 404 254 7 1342 761 177 169 15 chr9 99267460 99267655 -24808517 + URR1B DNA MER1_type 1 225 0 7 1342 869 46 9 0 chr9 99268145 99268254 -24807918 + B1_Mus1 SINE Alu 39 148 0 7 1342 234 0 0 0 chr9 99268256 99268282 -24807890 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1342 703 293 62 19 chr9 99268374 99268698 -24807474 - MLT2B1 LTR ERVL -4 563 132 7 1342 1236 48 0 7 chr9 99268710 99268858 -24807314 - B1_Mus2 SINE Alu 0 147 1 7 1342 293 259 138 23 chr9 99269329 99269416 -24806756 + RSINE1 SINE B4 68 164 -1 7 1342 201 195 0 0 chr9 99269416 99269457 -24806715 + (CACG)n Simple_repeat Simple_repeat 4 44 0 7 1342 215 274 16 16 chr9 99269570 99269633 -24806539 + PB1D10 SINE Alu 46 108 -9 7 1342 559 304 92 33 chr9 99269645 99269970 -24806202 - L1_Rod LINE L1 -802 5341 4936 7 1342 411 329 35 7 chr9 99269970 99270114 -24806058 - B1F1 SINE Alu -1 148 1 7 1342 559 298 94 34 chr9 99270114 99270303 -24805869 - L1_Rod LINE L1 -912 4935 4727 7 1342 1513 220 99 11 chr9 99270306 99270678 -24805494 - MTD LTR MaLR -14 405 1 7 1342 1184 319 131 38 chr9 99270678 99271823 -24804349 - L1M2 LINE L1 -1352 4791 3505 7 1342 1412 76 16 5 chr9 99271823 99272009 -24804163 - B2_Mm2 SINE B2 -6 189 2 7 1342 1184 319 131 38 chr9 99272009 99272160 -24804012 - L1M2 LINE L1 -2639 3504 3363 7 1342 1422 74 16 26 chr9 99272160 99272354 -24803818 - B2_Mm2 SINE B2 -2 193 2 7 1342 1184 319 131 38 chr9 99272354 99272415 -24803757 - L1M2 LINE L1 -2781 3362 3306 7 1342 395 38 19 0 chr9 99272415 99272468 -24803704 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1342 3257 188 38 31 chr9 99272592 99273230 -24802942 - RLTR26 LTR ERVK 0 642 1 7 1342 590 281 28 14 chr9 99273414 99273555 -24802617 - RSINE1 SINE B4 -17 148 6 7 1342 712 201 63 34 chr9 99274283 99274458 -24801714 - B3A SINE B2 -18 180 1 7 1342 465 272 148 90 chr9 99274458 99274769 -24801403 - MLT1C LTR MaLR -115 352 24 7 1342 361 286 49 102 chr9 99274771 99275107 -24801065 + ORR1E LTR MaLR 1 307 -67 7 1342 306 0 0 0 chr9 99275119 99275153 -24801019 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1342 885 283 34 52 chr9 99275240 99275531 -24800641 + B4A SINE B4 3 288 -4 7 1342 249 295 162 0 chr9 99276253 99276358 -24799814 - MER5A DNA MER1_type -67 122 1 7 1342 288 77 0 0 chr9 99276491 99276530 -24799642 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 7 1342 383 79 0 116 chr9 99276533 99276619 -24799553 + (CA)n Simple_repeat Simple_repeat 2 77 0 7 1342 198 0 0 0 chr9 99276619 99276641 -24799531 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 1342 1049 65 58 0 chr9 99276641 99276779 -24799393 - B1_Mus1 SINE Alu -1 147 2 7 1342 208 330 48 29 chr9 99277319 99277422 -24798750 - MIR SINE MIR -35 227 123 7 1342 783 197 15 0 chr9 99277846 99277983 -24798189 - B1_Mur1 SINE Alu 0 149 11 7 1342 987 148 0 0 chr9 99277984 99278126 -24798046 + B1_Mur4 SINE Alu 3 144 -6 7 1342 1081 123 12 75 chr9 99278140 99278394 -24797778 + RMER17C LTR ERVK 1 238 -172 7 1342 247 356 52 0 chr9 99278406 99278521 -24797651 - RMER15 LTR ERVL -45 530 410 7 1342 1877 179 86 33 chr9 99278542 99278970 -24797202 + RMER16 LTR ERVK 83 533 0 7 1342 1417 132 234 24 chr9 99279291 99279459 -24796713 - RMER17C LTR ERVK -5 405 234 7 1342 351 0 0 0 chr9 99279459 99279498 -24796674 + (GA)n Simple_repeat Simple_repeat 1 39 0 8 1342 1417 132 234 24 chr9 99279498 99279663 -24796509 - RMER17C LTR ERVK -177 233 4 7 1342 280 0 50 0 chr9 99280462 99280502 -24795670 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 8 1342 227 333 117 0 chr9 99281093 99281204 -24794968 + MIRb SINE MIR 124 247 -21 8 1342 421 103 156 9 chr9 99281895 99282006 -24794166 - B2_Mm2 SINE B2 0 193 47 8 1342 1413 62 11 0 chr9 99282019 99282195 -24793977 - B2_Mm1t SINE B2 -14 179 2 8 1342 381 235 12 0 chr9 99282355 99282436 -24793736 + ID4_ SINE ID 1 82 -1 8 1342 722 207 4 4 chr9 99282437 99282975 -24793197 + (CA)n Simple_repeat Simple_repeat 1 538 0 8 1342 210 214 52 35 chr9 99283619 99283677 -24792495 - MER5A DNA MER1_type -2 187 129 8 1342 1271 145 15 5 chr9 99283791 99283992 -24792180 - URR1B DNA MER1_type -15 210 8 8 1342 241 314 43 0 chr9 99284067 99284137 -24792035 - MER5A1 DNA MER1_type -16 150 78 8 1342 582 292 135 27 chr9 99284255 99284515 -24791657 + B4A SINE B4 1 288 -4 8 1342 499 66 13 13 chr9 99284563 99284640 -24791532 + (GGGA)n Simple_repeat Simple_repeat 3 79 0 8 1342 243 300 214 58 chr9 99284895 99285259 -24790913 - L2 LINE L2 -550 2869 2449 8 1342 1941 146 17 11 chr9 99285329 99285676 -24790496 - RLTR15 LTR ERVK -10 349 1 8 1342 233 240 17 160 chr9 99287689 99287808 -24788364 + ORR1A1-int LTR MaLR 906 1007 -785 8 1342 183 42 0 0 chr9 99290314 99290338 -24785834 + (TGGGGG)n Simple_repeat Simple_repeat 4 27 0 8 1342 839 128 30 0 chr9 99290338 99290471 -24785701 + B1_Mur4 SINE Alu 14 150 0 8 1342 552 299 208 33 chr9 99291890 99292505 -24783667 + L2a LINE L2 2591 3331 -95 8 1342 937 118 222 82 chr9 99294522 99294716 -24781456 - URR1A DNA MER1_type -3 223 3 8 1342 247 146 18 18 chr9 99294770 99294826 -24781346 + GA-rich Low_complexity Low_complexity 1 56 0 8 1342 260 250 98 24 chr9 99295771 99295853 -24780319 - L2a LINE L2 -1 3425 3338 8 1342 217 207 17 33 chr9 99295998 99296058 -24780114 + CT-rich Low_complexity Low_complexity 4 62 0 8 1342 333 0 0 0 chr9 99296542 99296579 -24779593 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1342 3383 153 118 14 chr9 99296612 99297262 -24778910 + RMER1A Other Other 301 1018 -12 8 1342 237 65 0 0 chr9 99297280 99297311 -24778861 + (TATG)n Simple_repeat Simple_repeat 2 32 0 8 1342 598 251 87 61 chr9 99298010 99298347 -24777825 + ORR1E LTR MaLR 30 353 -26 8 1342 1226 71 41 17 chr9 99298357 99298529 -24777643 + B2_Mm2 SINE B2 1 176 -19 8 1342 46 19 0 0 chr9 99298537 99298590 -24777582 + AT_rich Low_complexity Low_complexity 1 53 0 8 1342 186 133 0 0 chr9 99298597 99298627 -24777545 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 8 1342 260 281 169 37 chr9 99299492 99299765 -24776407 + L1MB8 LINE L1 5769 6077 -107 8 1342 1522 125 297 10 chr9 99299824 99300130 -24776042 + ORR1B1 LTR MaLR 1 394 0 8 1342 222 284 0 0 chr9 99300172 99300246 -24775926 + T-rich Low_complexity Low_complexity 1 74 0 8 1342 192 111 0 0 chr9 99300256 99300292 -24775880 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 8 1342 1236 41 0 13 chr9 99300293 99300442 -24775730 - B1_Mus2 SINE Alu 0 147 1 8 1342 759 148 62 0 chr9 99300446 99300574 -24775598 - B1_Mur4 SINE Alu -1 149 14 8 1342 1215 36 0 0 chr9 99300576 99300713 -24775459 + B1_Mus2 SINE Alu 2 138 -9 8 1342 183 42 0 0 chr9 99300713 99300737 -24775435 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1342 189 242 171 1 chr9 99302233 99302309 -24773863 + MIRc SINE MIR 36 118 -90 8 1342 229 289 72 0 chr9 99302760 99302857 -24773315 + L1MB8 LINE L1 6051 6154 -29 8 1342 253 224 0 0 chr9 99302857 99302915 -24773257 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 8 1342 2962 12 0 0 chr9 99302915 99303256 -24772916 + ORR1A0 LTR MaLR 1 341 -5 8 1342 252 86 0 0 chr9 99303256 99303291 -24772881 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 8 1342 257 188 0 30 chr9 99303292 99303358 -24772814 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 8 1342 381 275 92 47 chr9 99303911 99304221 -24771951 - ORR1E LTR MaLR -23 336 1 8 1342 214 270 11 53 chr9 99304318 99304412 -24771760 + (CACCAT)n Simple_repeat Simple_repeat 1 90 0 8 1342 2630 149 64 10 chr9 99304681 99305181 -24770991 + RLTR11A2 LTR ERVK 1 527 0 8 1342 2378 145 31 24 chr9 99305344 99305762 -24770410 + MTC LTR MaLR 1 421 0 8 1342 180 266 78 0 chr9 99305963 99306027 -24770145 - MIR SINE MIR 0 262 194 8 1342 352 258 11 0 chr9 99306122 99306211 -24769961 - MER103 DNA DNA -58 108 19 8 1342 730 220 8 0 chr9 99306260 99306392 -24769780 + B1_Mur1 SINE Alu 2 134 -15 8 1342 737 153 15 0 chr9 99306402 99306539 -24769633 + GA-rich Low_complexity Low_complexity 2 140 0 8 1342 561 246 210 16 chr9 99306756 99306942 -24769230 + ID_B1 SINE B4 3 224 0 8 1342 888 301 109 17 chr9 99307259 99307719 -24768453 + L1MD LINE L1 2410 2911 -3235 8 1342 310 257 76 83 chr9 99307719 99307759 -24768413 + B4 SINE B4 49 87 -205 8 1342 597 187 31 47 chr9 99307759 99307888 -24768284 + B1_Mur2 SINE Alu 1 127 -22 8 1342 423 149 0 0 chr9 99307888 99307962 -24768210 + (GGGA)n Simple_repeat Simple_repeat 2 75 0 8 1342 375 273 82 103 chr9 99307962 99308109 -24768063 + L1M4 LINE L1 2944 3088 -3058 8 1342 419 242 50 0 chr9 99308109 99308208 -24767964 + PB1 SINE Alu 5 108 -19 8 1342 375 273 82 103 chr9 99308208 99308477 -24767695 + L1M4 LINE L1 3089 3351 -2795 8 1342 309 241 92 46 chr9 99308528 99308615 -24767557 + L1M4 LINE L1 3328 3418 -2728 8 1342 1247 47 0 0 chr9 99308622 99308771 -24767401 + B2_Mm2 SINE B2 2 150 -45 8 1342 210 37 0 0 chr9 99308782 99308809 -24767363 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1342 521 332 38 101 chr9 99308814 99309241 -24766931 + L1M4 LINE L1 3416 3843 -2303 8 1342 670 224 20 27 chr9 99309241 99309388 -24766784 + RSINE1 SINE B4 3 148 -17 8 1342 521 332 38 101 chr9 99309388 99309475 -24766697 + L1M4 LINE L1 3844 3900 -2246 8 1342 1472 70 0 5 chr9 99309475 99309662 -24766510 - B2_Mm2 SINE B2 -7 188 3 8 1342 548 287 122 48 chr9 99309662 99310087 -24766085 + L1M4 LINE L1 3901 4331 -1815 8 1342 369 274 91 32 chr9 99310232 99310451 -24765721 + L1M4 LINE L1 4316 4547 -1599 8 1342 464 293 53 14 chr9 99310810 99311094 -24765078 + L1M4 LINE L1 4965 5259 -887 8 1342 231 323 139 20 chr9 99311217 99311318 -24764854 - MER5A DNA MER1_type -26 163 51 8 1342 235 310 40 40 chr9 99313118 99313192 -24762980 + MER20 DNA MER1_type 3 76 -143 8 1342 273 266 52 26 chr9 99313525 99313641 -24762531 + Lx7 LINE L1 6980 7098 -598 8 1342 375 264 22 44 chr9 99313790 99313925 -24762247 + Lx8 LINE L1 7072 7203 -270 8 1342 908 140 240 0 chr9 99314001 99314172 -24762000 - B3 SINE B2 0 216 5 8 1342 261 0 0 0 chr9 99314584 99314613 -24761559 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 8 1342 897 131 0 0 chr9 99314613 99314788 -24761384 + (CA)n Simple_repeat Simple_repeat 2 177 0 8 1342 257 309 24 12 chr9 99315394 99315476 -24760696 + PB1D10 SINE Alu 1 83 -34 8 1342 507 308 86 15 chr9 99316446 99316644 -24759528 + ID_B1 SINE B4 1 212 -12 8 1342 461 291 189 31 chr9 99316647 99316874 -24759298 + MER2 DNA MER2_type 82 344 -1 8 1342 372 270 26 26 chr9 99318880 99318994 -24757178 + Tigger16a DNA Tigger 797 910 -23 8 1342 1030 173 6 11 chr9 99319548 99319723 -24756449 + B3 SINE B2 1 174 -42 8 1342 1046 67 30 0 chr9 99319740 99319904 -24756268 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 8 1342 958 9 0 0 chr9 99321548 99321659 -24754513 + B1_Mm SINE Alu 32 142 -5 8 1342 796 270 0 24 chr9 99322000 99322167 -24754005 + RSINE1 SINE B4 1 163 -2 8 1342 247 363 97 26 chr9 99322012 99322207 -24753965 + B3 SINE B2 8 216 0 8 1342 234 224 0 33 chr9 99322210 99322270 -24753902 - MIR SINE MIR -137 125 68 8 1342 1128 163 113 0 chr9 99323545 99323748 -24752424 - URR1A DNA MER1_type 0 226 1 8 1342 202 422 36 24 chr9 99323777 99323942 -24752230 - L2c LINE L2 -196 3191 3025 8 1342 893 172 43 22 chr9 99325175 99325359 -24750813 - URR1B DNA MER1_type -2 223 36 8 1342 257 249 11 0 chr9 99326027 99326096 -24750076 - B1F SINE Alu -8 141 38 8 1342 235 185 56 0 chr9 99326109 99326163 -24750009 - Charlie8 DNA MER1_type -2281 147 91 8 1342 261 0 0 0 chr9 99326553 99326582 -24749590 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1342 963 136 0 33 chr9 99327100 99327252 -24748920 - B1_Mus2 SINE Alu 0 147 1 8 1342 733 291 50 5 chr9 99327297 99327497 -24748675 + ID_B1 SINE B4 1 209 -15 8 1342 211 28 56 0 chr9 99328543 99328579 -24747593 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 8 1342 1125 91 7 0 chr9 99330655 99330798 -24745374 - B1_Mm SINE Alu 0 147 4 8 1342 686 257 7 0 chr9 99330806 99330946 -24745226 - ID_B1 SINE B4 -3 221 81 8 1342 260 282 8 0 chr9 99331990 99332107 -24744065 + (TAGA)n Simple_repeat Simple_repeat 2 119 0 8 1342 628 193 70 9 chr9 99332502 99332617 -24743555 - RSINE1 SINE B4 -41 124 3 8 1342 503 289 29 22 chr9 99332626 99332764 -24743408 - ID_B1 SINE B4 -7 217 79 8 1342 345 131 0 0 chr9 99332834 99332895 -24743277 + (T)n Simple_repeat Simple_repeat 1 61 0 8 1342 997 294 96 3 chr9 99333954 99334299 -24741873 + MTEb LTR MaLR 1 377 -2 8 1342 266 341 45 60 chr9 99335166 99335187 -24740985 + ID_B1 SINE B4 65 196 -28 8 1342 464 241 53 9 chr9 99335187 99335300 -24740872 + B1_Mur1 SINE Alu 1 118 -31 8 1342 432 0 0 0 chr9 99335580 99335628 -24740544 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1342 30 0 0 0 chr9 99337086 99337116 -24739056 + GC_rich Low_complexity Low_complexity 1 30 0 8 1342 1016 262 99 59 chr9 99337662 99338185 -24737987 - L1MB7 LINE L1 -20 6164 5621 8 1342 260 219 0 15 chr9 99338530 99338595 -24737577 - L1MB7 LINE L1 -670 5508 5445 8 1342 315 0 0 0 chr9 99338619 99338654 -24737518 + (TC)n Simple_repeat Simple_repeat 2 36 0 8 1342 281 119 0 33 chr9 99339229 99339290 -24736882 + (CACCC)n Simple_repeat Simple_repeat 3 61 0 9 1342 615 149 0 0 chr9 99340272 99340379 -24735793 + (TG)n Simple_repeat Simple_repeat 2 108 0 9 1342 23 0 0 0 chr9 99340695 99340718 -24735454 + AT_rich Low_complexity Low_complexity 1 23 0 9 1342 290 360 67 18 chr9 99340719 99341050 -24735122 + L1MEg LINE L1 981 1327 -4915 9 1342 254 261 24 32 chr9 99341055 99341178 -24734994 + L1M2 LINE L1 5424 5545 -755 9 1342 1359 243 29 14 chr9 99341422 99341835 -24734337 + Lx7 LINE L1 5461 5918 -1778 9 1342 273 297 40 52 chr9 99342696 99342870 -24733302 + (CATATA)n Simple_repeat Simple_repeat 5 176 0 9 1342 308 338 85 5 chr9 99342947 99343158 -24733014 + L1MEg LINE L1 1472 1699 -4543 9 1342 536 225 184 7 chr9 99343200 99343352 -24732820 - RMER30 DNA MER1_type -5 197 19 9 1342 1521 62 5 0 chr9 99343879 99344071 -24732101 + B2_Mm1a SINE B2 1 193 0 9 1342 988 115 65 0 chr9 99344081 99344220 -24731952 + B1_Mus1 SINE Alu 1 148 0 9 1342 485 249 133 31 chr9 99344292 99344487 -24731685 - B3 SINE B2 0 216 2 9 1342 218 261 41 55 chr9 99344489 99344562 -24731610 - B1_Mur1 SINE Alu -1 148 77 9 1342 319 302 37 9 chr9 99344505 99344612 -24731560 - ID_B1 SINE B4 -13 211 102 9 1342 408 250 26 18 chr9 99345536 99345650 -24730522 + PB1 SINE Alu 13 127 0 9 1342 464 217 48 32 chr9 99345649 99345773 -24730399 - LTR40b LTR ERVL -8 454 329 9 1342 455 220 36 91 chr9 99346026 99346136 -24730036 + PB1D9 SINE Alu 11 114 -6 9 1342 235 267 28 28 chr9 99346360 99346468 -24729704 + L1MEg LINE L1 4258 4365 -1781 9 1342 358 209 0 0 chr9 99346489 99346556 -24729616 + B2_Mm2 SINE B2 2 68 -127 9 1342 228 277 15 0 chr9 99346753 99346818 -24729354 + BC1_Mm scRNA scRNA 32 97 -55 9 1342 420 364 30 25 chr9 99346820 99347023 -24729149 + L1MD2 LINE L1 4515 4718 -1428 9 1342 378 0 0 0 chr9 99347181 99347223 -24728949 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1342 507 133 36 69 chr9 99347223 99347338 -24728834 - B1_Mur3 SINE Alu -4 145 40 9 1342 660 192 61 8 chr9 99347404 99347535 -24728637 - B1_Mur1 SINE Alu 0 149 12 9 1342 1269 48 0 0 chr9 99347536 99347683 -24728489 + B1_Mus2 SINE Alu 1 147 0 9 1342 761 295 102 58 chr9 99347867 99348230 -24727942 + L1MD2 LINE L1 5769 6144 -215 9 1342 531 0 0 0 chr9 99348230 99348289 -24727883 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1342 761 295 102 58 chr9 99348289 99348447 -24727725 + L1MD2 LINE L1 6145 6313 -46 9 1342 318 299 92 0 chr9 99348485 99348572 -24727600 + PB1 SINE Alu 5 99 -28 9 1342 745 253 10 81 chr9 99348629 99348827 -24727345 - B3A SINE B2 -14 184 1 9 1342 233 250 194 0 chr9 99349018 99349090 -24727082 + PB1D10 SINE Alu 11 96 -21 9 1342 720 26 6 82 chr9 99349531 99349701 -24726471 + (TCC)n Simple_repeat Simple_repeat 1 157 0 9 1342 492 264 4 66 chr9 99349711 99349732 -24726440 - ID_B1 SINE B4 -46 246 154 9 1342 886 170 0 0 chr9 99349732 99349873 -24726299 - B1_Mur3 SINE Alu 0 149 9 9 1342 492 264 4 66 chr9 99349873 99349888 -24726284 - ID_B1 SINE B4 -46 153 76 9 1342 397 189 17 51 chr9 99349906 99350023 -24726149 - Lx4B LINE L1 0 7058 6946 9 1342 414 0 0 0 chr9 99350048 99350094 -24726078 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1342 1724 131 9 66 chr9 99350094 99350413 -24725759 + Lx4B LINE L1 6606 6906 -152 9 1342 198 71 0 0 chr9 99350601 99350629 -24725543 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1342 805 186 101 63 chr9 99350744 99350951 -24725221 + B3 SINE B2 1 215 -1 9 1342 1147 82 0 0 chr9 99351109 99351256 -24724916 - B1_Mus1 SINE Alu 0 148 2 9 1342 663 222 102 41 chr9 99351267 99351464 -24724708 - B3 SINE B2 -5 211 3 9 1342 231 61 0 0 chr9 99352080 99352113 -24724059 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1343 612 40 0 0 chr9 99352833 99352908 -24723264 + (TCC)n Simple_repeat Simple_repeat 1 75 0 9 1343 190 324 99 0 chr9 99352939 99353010 -24723162 + MIR3 SINE MIR 129 206 -2 9 1343 456 121 0 0 chr9 99353345 99353436 -24722736 + (GA)n Simple_repeat Simple_repeat 1 91 0 9 1343 513 0 0 0 chr9 99353853 99353910 -24722262 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1343 315 0 0 0 chr9 99353910 99353944 -24722228 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1343 1291 181 5 0 chr9 99354068 99354283 -24721889 + B3 SINE B2 1 216 0 9 1343 426 342 30 41 chr9 99354376 99354739 -24721433 - ORR1E LTR MaLR 0 359 1 9 1343 754 132 0 0 chr9 99355050 99355156 -24721016 + B1_Mur4 SINE Alu 2 107 -43 9 1343 396 0 0 0 chr9 99355176 99355220 -24720952 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1343 325 245 81 45 chr9 99355253 99355364 -24720808 - B4A SINE B4 -9 283 169 9 1343 460 333 31 26 chr9 99355355 99355546 -24720626 + ORR1E LTR MaLR 27 218 -141 9 1343 612 247 129 55 chr9 99355541 99355704 -24720468 - B4A SINE B4 -117 175 1 9 1343 814 171 93 12 chr9 99355807 99355979 -24720193 - B2_Mm2 SINE B2 -9 186 1 9 1343 302 125 0 35 chr9 99356046 99356104 -24720068 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 9 1343 531 194 0 0 chr9 99356175 99356283 -24719889 + (TA)n Simple_repeat Simple_repeat 2 109 0 9 1343 609 258 79 7 chr9 99356784 99356936 -24719236 + ID_B1 SINE B4 54 216 -8 9 1343 245 214 66 82 chr9 99356888 99356949 -24719223 + PB1D7 SINE Alu 61 120 0 9 1343 256 243 214 0 chr9 99356983 99357086 -24719086 + MER44B DNA MER2_type 1 125 -425 9 1343 828 305 120 61 chr9 99357524 99358034 -24718138 - MLT1F2 LTR MaLR 0 560 21 9 1343 345 218 0 0 chr9 99358524 99358602 -24717570 + (TG)n Simple_repeat Simple_repeat 2 79 0 9 1343 423 0 0 0 chr9 99358916 99358963 -24717209 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1343 911 222 21 0 chr9 99359333 99359522 -24716650 - B3 SINE B2 -13 203 11 9 1343 460 244 106 56 chr9 99359762 99359952 -24716220 - ID_B1 SINE B4 -46 246 44 9 1343 276 139 0 40 chr9 99361307 99361382 -24714790 - RMER17C LTR ERVK 0 410 339 9 1343 547 254 91 7 chr9 99361859 99362002 -24714170 - RSINE1 SINE B4 -10 155 1 9 1343 246 273 178 58 chr9 99362392 99362585 -24713587 + L2a LINE L2 3144 3416 -10 9 1343 1198 260 140 19 chr9 99363558 99363930 -24712242 + Lx5 LINE L1 6634 7050 0 9 1343 24 32 0 0 chr9 99363944 99363975 -24712197 + AT_rich Low_complexity Low_complexity 1 31 0 9 1343 1188 53 0 0 chr9 99364502 99364654 -24711518 - ORR1A2 LTR MaLR -175 152 1 9 1343 403 202 10 119 chr9 99365674 99365775 -24710397 - RLTR41 LTR ERV1 0 446 357 9 1343 210 105 0 0 chr9 99365775 99365813 -24710359 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 9 1343 1190 71 0 0 chr9 99365814 99365955 -24710217 - B1_Mus1 SINE Alu -6 142 2 9 1343 1659 129 228 3 chr9 99365955 99366258 -24709914 - RLTR41 LTR ERV1 -75 371 1 9 1343 1425 92 0 5 chr9 99366575 99366771 -24709401 - B2_Mm2 SINE B2 0 195 1 9 1343 180 111 0 0 chr9 99366877 99366904 -24709268 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1343 307 215 0 15 chr9 99366911 99366977 -24709195 - ID2 SINE ID -18 65 1 9 1343 401 0 20 0 chr9 99367737 99367786 -24708386 + (CAA)n Simple_repeat Simple_repeat 2 51 0 9 1343 929 209 46 5 chr9 99367940 99368137 -24708035 + B3 SINE B2 1 205 -11 9 1343 299 293 8 41 chr9 99368900 99369021 -24707151 + RMER12 LTR ERVK 734 850 -472 9 1343 253 47 23 23 chr9 99370652 99370696 -24705476 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 9 1343 230 235 0 0 chr9 99371901 99371952 -24704220 - Lx7 LINE L1 -345 7128 7078 9 1343 322 289 133 13 chr9 99371985 99372143 -24704029 - Lx7 LINE L1 -468 7005 6829 9 1343 855 259 164 19 chr9 99372570 99372999 -24703173 - Lx7 LINE L1 -1789 5907 5369 9 1343 1128 22 64 14 chr9 99373021 99373161 -24703011 - B1_Mus2 SINE Alu 0 147 1 9 1343 669 58 0 0 chr9 99373357 99373443 -24702729 + (TC)n Simple_repeat Simple_repeat 2 87 0 9 1343 670 188 7 52 chr9 99373660 99373795 -24702377 + B1_Mus1 SINE Alu 1 129 -19 9 1343 182 62 0 30 chr9 99373799 99373832 -24702340 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9 1343 264 382 23 0 chr9 99374431 99374553 -24701619 + MIRb SINE MIR 51 178 -98 9 1343 276 30 0 0 chr9 99375190 99375223 -24700949 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1343 269 325 48 0 chr9 99375263 99375346 -24700826 - RSINE1 SINE B4 -77 88 2 9 1343 201 159 0 0 chr9 99380447 99380491 -24695681 + T-rich Low_complexity Low_complexity 1 44 0 9 1343 441 81 0 0 chr9 99380784 99380846 -24695326 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1343 368 276 107 7 chr9 99381804 99381932 -24694240 - B1F1 SINE Alu 0 149 14 9 1343 368 256 37 0 chr9 99382060 99382142 -24694030 + PB1D7 SINE Alu 22 106 -14 9 1343 333 257 36 66 chr9 99382317 99382447 -24693725 - PB1 SINE Alu -1 148 6 9 1343 189 291 101 47 chr9 99383036 99383184 -24692988 + L2 LINE L2 2110 2265 -1154 9 1343 249 293 142 54 chr9 99383196 99383344 -24692828 + RSINE1 SINE B4 5 165 0 9 1343 1075 196 28 23 chr9 99385399 99385613 -24690559 + B3 SINE B2 2 216 0 9 1343 372 333 151 50 chr9 99386160 99386517 -24689655 - L2 LINE L2 -500 2919 2527 9 1343 223 358 141 32 chr9 99386721 99386877 -24689295 + MER5B DNA MER1_type 3 175 -3 9 1343 226 301 233 37 chr9 99387173 99387418 -24688754 - L2b LINE L2 -5 3370 3078 9 1343 1164 183 14 50 chr9 99388419 99388638 -24687534 + B3 SINE B2 1 211 -5 9 1343 512 288 27 14 chr9 99389949 99390097 -24686075 - RSINE1 SINE B4 -11 154 5 9 1343 402 270 6 10 chr9 99390120 99390216 -24685956 - B1F SINE Alu -3 117 19 9 1343 199 73 73 0 chr9 99390994 99391035 -24685137 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1343 353 213 64 0 chr9 99391417 99391511 -24684661 + L1MD LINE L1 3994 4093 -2053 9 1343 290 347 15 76 chr9 99391767 99391829 -24684343 + B1F1 SINE Alu 18 79 -70 1 1343 859 43 248 0 chr9 99391829 99391946 -24684226 + B1_Mus2 SINE Alu 2 147 0 1 1343 290 347 15 76 chr9 99391946 99392014 -24684158 + B1F1 SINE Alu 80 140 -9 1 1343 348 317 54 5 chr9 99392080 99392283 -24683889 + L1M5 LINE L1 3330 3542 -2604 1 1343 309 243 80 9 chr9 99392604 99392716 -24683456 - L1MD LINE L1 -487 5755 5636 1 1343 582 277 131 28 chr9 99392745 99393035 -24683137 + MER2 DNA MER2_type 26 345 0 1 1343 236 160 120 0 chr9 99393047 99393097 -24683075 - L1M5 LINE L1 -848 5596 5541 1 1343 300 294 110 0 chr9 99393150 99393286 -24682886 + RSINE1 SINE B4 3 153 -12 1 1343 489 322 233 33 chr9 99393385 99394353 -24681819 - L1MD LINE L1 -859 5287 4134 1 1343 826 128 17 0 chr9 99395855 99395972 -24680200 - PB1D9 SINE Alu 0 120 2 1 1343 353 177 13 0 chr9 99396961 99397040 -24679132 + (TATG)n Simple_repeat Simple_repeat 3 82 0 1 1343 23 0 0 0 chr9 99397856 99397879 -24678293 + AT_rich Low_complexity Low_complexity 1 23 0 1 1343 243 0 0 0 chr9 99400022 99400049 -24676123 + (CCTG)n Simple_repeat Simple_repeat 1 27 0 1 1343 549 0 0 0 chr9 99400079 99400140 -24676032 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1343 301 198 61 121 chr9 99400608 99400671 -24675501 - L1MC4 LINE L1 -112 7930 7876 1 1343 1062 65 0 0 chr9 99400671 99400810 -24675362 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 1 1343 301 198 61 121 chr9 99400810 99400878 -24675294 - L1MC4 LINE L1 -167 7875 7807 1 1343 319 184 51 26 chr9 99400883 99400961 -24675211 + B4A SINE B4 2 81 -211 1 1343 275 250 125 36 chr9 99400961 99400995 -24675177 + B3A SINE B2 2 123 -75 1 1343 378 108 0 0 chr9 99401461 99401526 -24674646 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1343 996 324 39 35 chr9 99401702 99402211 -24673961 + Lx8 LINE L1 6963 7473 0 1 1343 378 230 25 105 chr9 99402429 99402524 -24673648 - PB1 SINE Alu -50 98 9 1 1343 983 162 7 7 chr9 99402714 99402863 -24673309 + B1_Mur4 SINE Alu 1 149 -1 1 1343 355 195 49 49 chr9 99403202 99403283 -24672889 + ID2 SINE ID 2 82 -1 1 1343 440 99 0 14 chr9 99403284 99403356 -24672816 + (TATG)n Simple_repeat Simple_repeat 2 72 0 1 1343 1129 103 7 0 chr9 99403399 99403545 -24672627 + B1_Mus1 SINE Alu 2 148 0 1 1343 231 91 59 29 chr9 99403547 99403615 -24672557 + A-rich Low_complexity Low_complexity 3 72 0 1 1343 23 0 0 0 chr9 99403626 99403649 -24672523 + AT_rich Low_complexity Low_complexity 1 23 0 1 1343 369 324 27 45 chr9 99404710 99404820 -24671352 - PB1D10 SINE Alu -13 104 1 1 1343 874 164 119 11 chr9 99407380 99407565 -24668607 + B3 SINE B2 1 205 -11 1 1343 413 333 63 38 chr9 99407572 99407731 -24668441 + RSINE1 SINE B4 3 165 0 1 1343 180 221 39 0 chr9 99407735 99407812 -24668360 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 1343 600 134 0 0 chr9 99407867 99407964 -24668208 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 1343 683 209 62 0 chr9 99408838 99408967 -24667205 + RSINE1 SINE B4 23 159 -6 1 1343 479 17 17 0 chr9 99411783 99411843 -24664329 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1343 370 160 66 13 chr9 99412450 99412526 -24663646 + ID4 SINE ID 4 83 0 1 1343 24 0 0 0 chr9 99412526 99412550 -24663622 + AT_rich Low_complexity Low_complexity 1 24 0 1 1343 229 274 179 0 chr9 99412792 99412876 -24663296 - PB1D10 SINE Alu -18 99 1 1 1343 348 253 52 10 chr9 99413382 99413478 -24662694 + MIRb SINE MIR 164 263 -5 1 1343 1189 153 46 9 chr9 99413852 99414069 -24662103 - URR1B DNA MER1_type 0 225 1 1 1343 186 43 0 0 chr9 99414084 99414107 -24662065 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1343 273 255 173 36 chr9 99415941 99416051 -24660121 + PB1 SINE Alu 1 125 -2 1 1343 437 227 109 0 chr9 99416994 99417104 -24659068 - L2a LINE L2 -3 3423 3302 1 1343 643 259 0 7 chr9 99418120 99418256 -24657916 - ID_B1 SINE B4 -10 214 80 1 1343 24 0 0 0 chr9 99418701 99418725 -24657447 + AT_rich Low_complexity Low_complexity 1 24 0 1 1343 26 0 0 0 chr9 99420441 99420467 -24655705 + AT_rich Low_complexity Low_complexity 1 26 0 1 1343 204 159 23 0 chr9 99421054 99421098 -24655074 + A-rich Low_complexity Low_complexity 4 48 0 1 1343 579 256 0 17 chr9 99422614 99422733 -24653439 - PB1D10 SINE Alu 0 117 1 1 1343 297 0 0 0 chr9 99423204 99423237 -24652935 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1343 273 133 342 13 chr9 99424542 99424618 -24651554 - RMER15 LTR ERVL -99 476 376 1 1343 804 175 40 47 chr9 99425003 99425153 -24651019 - B1_Mur4 SINE Alu -1 149 1 1 1343 284 261 100 55 chr9 99425243 99425393 -24650779 - MIRc SINE MIR -61 201 45 1 1343 246 32 0 0 chr9 99425979 99426010 -24650162 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1343 247 291 0 23 chr9 99426109 99426197 -24649975 + CT-rich Low_complexity Low_complexity 3 88 0 1 1343 1507 70 22 0 chr9 99426343 99426528 -24649644 + B2_Mm2 SINE B2 1 189 -6 1 1343 716 118 172 3 chr9 99426669 99426815 -24649357 + B2_Mm2 SINE B2 1 169 -24 1 1343 634 191 175 26 chr9 99428669 99428804 -24647368 + Lx8 LINE L1 7193 7354 -119 1 1343 213 94 0 0 chr9 99428804 99428836 -24647336 + (CAA)n Simple_repeat Simple_repeat 1 32 0 1 1343 634 191 175 26 chr9 99428836 99428894 -24647278 + Lx8 LINE L1 7355 7415 -58 1 1343 883 96 151 0 chr9 99430074 99430220 -24645952 - URR1A DNA MER1_type 0 226 59 1 1343 182 312 0 0 chr9 99430461 99430509 -24645663 - L2a LINE L2 -15 3411 3364 1 1343 461 184 82 29 chr9 99430619 99430767 -24645405 + L1_Rod LINE L1 5081 5299 -844 1 1343 208 156 22 0 chr9 99430935 99430951 -24645221 + A-rich Low_complexity Low_complexity 2 17 0 1 1343 400 255 45 96 chr9 99430951 99431107 -24645065 + B1F1 SINE Alu 1 148 -1 1 1343 208 156 22 0 chr9 99431107 99431135 -24645037 + A-rich Low_complexity Low_complexity 18 46 0 1 1343 1007 116 0 0 chr9 99431471 99431609 -24644563 - B1_Mus1 SINE Alu 0 148 11 1 1343 392 256 53 113 chr9 99431477 99431627 -24644545 - B4A SINE B4 -71 221 81 1 1343 552 171 35 43 chr9 99433082 99433198 -24642974 + B1_Mus1 SINE Alu 1 115 -33 1 1343 249 203 27 68 chr9 99433308 99433382 -24642790 + Tigger7 DNA MER2_type 381 451 -2040 1 1343 1285 100 9 4 chr9 99433659 99433855 -24642317 - B2_Mm2 SINE B2 -14 202 1 1 1343 517 264 301 57 chr9 99434278 99434507 -24641665 + B4A SINE B4 3 287 -5 1 1343 197 300 86 12 chr9 99434835 99434916 -24641256 - MER5A DNA MER1_type -83 106 20 1 1343 2175 120 78 3 chr9 99435407 99435741 -24640431 + RLTR15 LTR ERVK 1 359 0 1 1343 1059 110 20 27 chr9 99436361 99436511 -24639661 - B1_Mur4 SINE Alu 0 150 2 1 1343 1858 206 63 0 chr9 99436855 99437252 -24638920 + Lx9 LINE L1 7033 7454 -190 1 1343 180 0 0 0 chr9 99437255 99437275 -24638897 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1343 268 170 137 43 chr9 99437276 99437393 -24638779 + Lx9 LINE L1 7517 7644 0 1 1343 206 264 0 19 chr9 99438800 99438854 -24637318 + CT-rich Low_complexity Low_complexity 2 54 0 1 1343 622 269 0 129 chr9 99438873 99439082 -24637090 - B3A SINE B2 -16 182 1 1 1343 428 293 88 34 chr9 99439083 99439380 -24636792 - L1MEc LINE L1 -4190 2210 1898 1 1343 1093 51 7 0 chr9 99439387 99439524 -24636648 + B1_Mus1 SINE Alu 11 148 0 1 1343 1944 193 60 26 chr9 99439947 99440367 -24635805 + Lx5 LINE L1 6068 6501 -549 1 1343 2050 203 9 91 chr9 99440370 99440928 -24635244 + RLTR11A LTR ERVK 1 509 -19 1 1343 1415 90 11 11 chr9 99440928 99441118 -24635054 - B2_Mm2 SINE B2 -4 191 2 1 1343 2398 245 11 15 chr9 99441150 99441683 -24634489 + Lx5 LINE L1 6500 7031 -19 1 1343 438 20 0 0 chr9 99441683 99441734 -24634438 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 1343 1341 84 62 0 chr9 99442248 99442427 -24633745 + B2_Mm2 SINE B2 3 192 -3 1 1343 421 211 0 0 chr9 99442581 99442652 -24633520 + ID4 SINE ID 3 73 -10 1 1343 1513 46 40 0 chr9 99442787 99442960 -24633212 - B2_Mm2 SINE B2 -14 181 2 1 1343 380 0 67 0 chr9 99443533 99443593 -24632579 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1343 264 100 0 0 chr9 99444079 99444119 -24632053 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 1 1343 241 291 168 45 chr9 99444122 99444277 -24631895 - MIRc SINE MIR -31 237 64 1 1343 420 185 88 53 chr9 99444284 99444398 -24631774 + PB1D7 SINE Alu 3 120 0 1 1343 181 219 0 0 chr9 99445301 99445333 -24630839 + MIRm SINE MIR 223 254 -22 1 1343 309 51 0 0 chr9 99446774 99446813 -24629359 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1 1343 822 162 18 36 chr9 99446813 99446979 -24629193 - B2_Mm2 SINE B2 -32 163 1 1 1343 24 0 0 0 chr9 99447292 99447316 -24628856 + AT_rich Low_complexity Low_complexity 1 24 0 1 1343 240 182 36 0 chr9 99447396 99447451 -24628721 - Lx8 LINE L1 -1 7472 7416 1 1343 23 68 0 0 chr9 99447962 99448006 -24628166 + AT_rich Low_complexity Low_complexity 1 44 0 1 1343 572 281 30 0 chr9 99448611 99448746 -24627426 - ID_B1 SINE B4 -5 219 81 1 1343 853 120 23 10 chr9 99449444 99449594 -24626578 + B2_Mm2 SINE B2 46 192 -3 1 1343 394 294 50 8 chr9 99449791 99449911 -24626261 - MIRb SINE MIR -78 190 66 1 1343 939 249 10 15 chr9 99450720 99450924 -24625248 + B3 SINE B2 1 203 -13 1 1343 831 207 0 7 chr9 99450971 99451107 -24625065 - B1_Mur3 SINE Alu -13 136 2 1 1343 23 33 0 0 chr9 99451672 99451702 -24624470 + AT_rich Low_complexity Low_complexity 1 30 0 1 1343 366 23 0 0 chr9 99452565 99452608 -24623564 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1343 292 226 175 41 chr9 99452869 99452966 -24623206 + PB1D10 SINE Alu 1 110 -7 1 1343 915 211 68 5 chr9 99453634 99453825 -24622347 + B3 SINE B2 2 204 -12 1 1343 252 86 0 0 chr9 99453825 99453860 -24622312 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1343 613 282 141 0 chr9 99453939 99454116 -24622056 - B4A SINE B4 -82 210 9 1 1343 1703 27 0 5 chr9 99454265 99454454 -24621718 - B2_Mm1a SINE B2 -4 189 2 1 1343 475 264 52 91 chr9 99454508 99454795 -24621377 - L1M4 LINE L1 -1198 4948 4673 1 1343 252 216 223 16 chr9 99455483 99455676 -24620496 + MER33 DNA MER1_type 92 324 0 1 1343 464 321 142 66 chr9 99455676 99456206 -24619966 - L2 LINE L2 -506 2913 2344 1 1343 339 289 66 8 chr9 99456303 99456425 -24619747 - L2 LINE L2 -1292 2127 1999 1 1343 196 290 126 36 chr9 99456501 99456612 -24619560 - L2 LINE L2 -2406 1013 893 1 1343 616 154 74 33 chr9 99456664 99456785 -24619387 + B1_Mur2 SINE Alu 3 128 -21 1 1343 186 189 0 0 chr9 99456788 99456825 -24619347 + GA-rich Low_complexity Low_complexity 6 42 0 1 1343 200 335 86 68 chr9 99456922 99457085 -24619087 - L2 LINE L2 -2814 605 440 1 1343 1269 95 77 16 chr9 99457827 99458009 -24618163 + B2_Mm2 SINE B2 1 193 -2 1 1343 406 308 233 40 chr9 99458178 99458526 -24617646 + MLT1F2 LTR MaLR 12 426 -122 1 1343 186 103 0 0 chr9 99458629 99458658 -24617514 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1343 1309 55 0 0 chr9 99458669 99458833 -24617339 - B2_Mm2 SINE B2 -31 164 1 1 1343 1141 96 102 0 chr9 99458882 99459048 -24617124 - B2_Mm2 SINE B2 -9 186 4 1 1343 1485 70 32 0 chr9 99459468 99459655 -24616517 + B2_Mm2 SINE B2 2 194 -1 1 1343 489 17 0 0 chr9 99459912 99459970 -24616202 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 1 1343 932 244 79 67 chr9 99459974 99460317 -24615855 - L1MA4 LINE L1 -409 5891 5545 1 1343 392 231 28 214 chr9 99460663 99460750 -24615422 + B1F2 SINE Alu 2 73 -76 1 1343 1313 41 0 7 chr9 99460750 99460899 -24615273 - B1_Mus1 SINE Alu 0 148 1 1 1343 392 231 28 214 chr9 99460899 99460993 -24615179 + B1F2 SINE Alu 74 149 0 1 1343 609 303 107 15 chr9 99461169 99461440 -24614732 + MER20B DNA MER1_type 97 392 -391 1 1343 1034 24 142 0 chr9 99461913 99462040 -24614132 + B1_Mm SINE Alu 2 146 -1 1 1343 213 65 32 0 chr9 99463353 99463384 -24612788 - RSINE1 SINE B4 -40 125 94 1 1343 1470 267 134 43 chr9 99465028 99465776 -24610396 + L1MD1 LINE L1 5265 6080 -162 1 1343 459 0 0 0 chr9 99466056 99466107 -24610065 + (GAA)n Simple_repeat Simple_repeat 3 53 0 1 1343 702 0 0 0 chr9 99466107 99466185 -24609987 + (CAG)n Simple_repeat Simple_repeat 2 79 0 1 1343 718 262 133 86 chr9 99466663 99466725 -24609447 - B4A SINE B4 -25 267 216 1 1343 1321 34 0 0 chr9 99466725 99466872 -24609300 + B1_Mus2 SINE Alu 1 147 0 1 1343 718 262 133 86 chr9 99466872 99467064 -24609108 - B4A SINE B4 -77 215 1 1 1343 228 137 0 0 chr9 99467087 99467138 -24609034 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1343 23 0 0 0 chr9 99469089 99469112 -24607060 + GC_rich Low_complexity Low_complexity 1 23 0 1 1343 295 363 33 33 chr9 99469668 99469819 -24606353 + MIR SINE MIR 7 157 -105 1 1343 180 0 0 0 chr9 99469831 99469851 -24606321 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1343 267 270 128 33 chr9 99470234 99470414 -24605758 - MER113A DNA MER1_type -70 244 48 1 1343 267 31 0 0 chr9 99470630 99470662 -24605510 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1343 466 331 15 0 chr9 99470666 99470796 -24605376 - RSINE1 SINE B4 -30 135 4 1 1343 513 328 170 0 chr9 99471046 99471305 -24604867 - LTR16E1 LTR ERVL -30 508 206 1 1343 453 36 0 0 chr9 99471346 99471401 -24604771 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1343 278 336 21 21 chr9 99471571 99471714 -24604458 - Lx8 LINE L1 -302 7171 7029 1 1343 2354 140 42 5 chr9 99471727 99472107 -24604065 - MTC LTR MaLR 0 421 28 1 1343 1613 189 18 84 chr9 99472228 99472620 -24603552 - MT2B LTR ERVL 0 601 169 1 1343 1001 102 191 0 chr9 99472620 99472755 -24603417 + B2_Mm2 SINE B2 2 166 -29 1 1343 1648 33 22 0 chr9 99472755 99472938 -24603234 - B2_Mm1t SINE B2 -5 188 2 1 1343 1001 102 191 0 chr9 99472938 99472959 -24603213 + B2_Mm2 SINE B2 167 187 -8 1 1343 942 260 101 99 chr9 99472959 99473082 -24603090 - MT2B LTR ERVL -365 168 18 1 1343 527 311 37 0 chr9 99473120 99473255 -24602917 + RSINE1 SINE B4 4 143 -22 1 1343 462 36 0 0 chr9 99473257 99473313 -24602859 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1343 573 259 157 0 chr9 99473366 99473532 -24602640 + Lx9 LINE L1 7088 7279 -365 1 1343 708 239 0 0 chr9 99473533 99473671 -24602501 + B1_Mur3 SINE Alu 8 145 -4 1 1343 218 132 0 19 chr9 99473681 99473735 -24602437 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1 1343 350 279 31 47 chr9 99473735 99473863 -24602309 + Lx9 LINE L1 7247 7372 -272 1 1343 489 34 0 0 chr9 99473901 99473960 -24602212 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1343 373 197 66 0 chr9 99474368 99474444 -24601728 + B1_Mur1 SINE Alu 69 149 0 1 1343 420 265 58 25 chr9 99474651 99474663 -24601509 - B1_Mur4 SINE Alu -21 129 119 1 1343 912 57 195 0 chr9 99474663 99474786 -24601386 - B1_Mus2 SINE Alu 0 147 1 1 1343 420 265 58 25 chr9 99474786 99474893 -24601279 - B1_Mur4 SINE Alu -32 118 6 1 1343 2690 131 195 31 chr9 99474974 99475461 -24600711 + RMER2 LTR ERV1 1 567 0 1 1343 1251 41 14 0 chr9 99475850 99475995 -24600177 - B1_Mm SINE Alu 0 147 1 1 1343 820 176 91 0 chr9 99477579 99477744 -24598428 - B2_Mm2 SINE B2 -15 180 1 1 1343 333 305 22 58 chr9 99477966 99478105 -24598067 - L1MC5 LINE L1 -471 7490 7357 1 1343 673 222 15 7 chr9 99478268 99478404 -24597768 + B1_Mur1 SINE Alu 13 149 0 1 1343 21 57 0 0 chr9 99479046 99479081 -24597091 + AT_rich Low_complexity Low_complexity 1 35 0 1 1343 716 45 0 0 chr9 99480025 99480113 -24596059 - B1_Mur4 SINE Alu 0 150 63 1 1343 1493 76 16 0 chr9 99480229 99480413 -24595759 - B2_Mm2 SINE B2 -7 188 2 1 1343 180 319 197 25 chr9 99480942 99481064 -24595108 - L2c LINE L2 -214 3173 3031 1 1343 857 145 66 55 chr9 99481183 99481365 -24594807 + B2_Mm2 SINE B2 2 185 -10 1 1343 1331 126 16 5 chr9 99481587 99481779 -24594393 - B2_Mm2 SINE B2 -1 194 1 1 1343 243 0 0 0 chr9 99481795 99481822 -24594350 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1343 902 130 0 0 chr9 99481822 99481953 -24594219 - B1_Mur4 SINE Alu -11 139 9 1 1343 26 0 0 0 chr9 99482654 99482680 -24593492 + AT_rich Low_complexity Low_complexity 1 26 0 1 1343 931 229 34 5 chr9 99483241 99483447 -24592725 - B3 SINE B2 -3 213 2 1 1343 1111 82 20 0 chr9 99483463 99483610 -24592562 - B1_Mur4 SINE Alu 0 150 1 1 1344 248 203 0 72 chr9 99484042 99484111 -24592061 + LTR81C LTR ERV1? 855 918 -235 1 1344 24 53 0 0 chr9 99484849 99484887 -24591285 + AT_rich Low_complexity Low_complexity 1 38 0 1 1344 636 229 50 0 chr9 99485453 99485593 -24590579 + B1_Mm SINE Alu 1 147 0 1 1344 816 218 77 53 chr9 99486434 99486642 -24589530 + B3 SINE B2 1 213 -3 1 1344 242 232 153 42 chr9 99487051 99487123 -24589049 + ID_B1 SINE B4 61 140 -84 1 1344 219 244 0 0 chr9 99487087 99487132 -24589040 + B1F2 SINE Alu 24 68 -81 1 1344 1446 96 5 0 chr9 99487213 99487400 -24588772 + B2_Mm1t SINE B2 1 188 -5 1 1344 967 231 44 0 chr9 99487632 99487835 -24588337 + B3 SINE B2 2 213 -3 1 1344 221 253 122 33 chr9 99487952 99488042 -24588130 - B1F1 SINE Alu -51 98 1 1 1344 29 47 0 0 chr9 99488649 99488692 -24587480 + AT_rich Low_complexity Low_complexity 1 43 0 1 1344 1244 55 7 0 chr9 99488733 99488878 -24587294 + B1_Mus2 SINE Alu 1 146 -1 1 1344 315 279 66 93 chr9 99488933 99488953 -24587219 - B2_Mm2 SINE B2 -10 185 164 1 1344 261 0 0 0 chr9 99488953 99488982 -24587190 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1344 716 232 52 28 chr9 99488982 99489143 -24587029 - B3A SINE B2 -30 168 9 1 1344 791 166 0 132 chr9 99489154 99489321 -24586851 - B1_Mus1 SINE Alu -3 145 1 1 1344 503 156 0 0 chr9 99489452 99489529 -24586643 + BC1_Mm scRNA scRNA 2 78 -74 1 1344 313 227 80 0 chr9 99489529 99489540 -24586632 + ID_B1 SINE B4 2 96 -128 1 1344 399 181 0 0 chr9 99489970 99490086 -24586086 + GA-rich Low_complexity Low_complexity 1 116 0 1 1344 207 0 0 0 chr9 99490739 99490762 -24585410 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1344 464 62 47 0 chr9 99490765 99490829 -24585343 - B1_Mus2 SINE Alu -7 140 74 1 1344 452 53 0 81 chr9 99491461 99491585 -24584587 + (CAGG)n Simple_repeat Simple_repeat 1 114 0 1 1344 392 264 32 24 chr9 99492217 99492341 -24583831 - L1M2 LINE L1 -702 5610 5486 1 1344 216 24 48 24 chr9 99492344 99492386 -24583786 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1344 562 274 0 0 chr9 99492388 99492494 -24583678 - PB1D7 SINE Alu -13 107 2 1 1344 1177 103 115 0 chr9 99492688 99492862 -24583310 - B2_Mm2 SINE B2 0 195 2 1 1344 324 252 0 130 chr9 99493768 99493801 -24582371 - L1MC5 LINE L1 -699 7262 7236 1 1344 1167 99 0 0 chr9 99493801 99493981 -24582191 + (TG)n Simple_repeat Simple_repeat 1 183 -262 1 1344 1167 99 0 0 chr9 99493991 99494246 -24581926 + (TG)n Simple_repeat Simple_repeat 184 445 0 1 1344 324 252 0 130 chr9 99494246 99494322 -24581850 - L1MC5 LINE L1 -731 7230 7156 1 1344 1085 116 14 0 chr9 99494339 99494485 -24581687 - B1_Mur4 SINE Alu -2 148 1 1 1344 1384 77 27 16 chr9 99494554 99494739 -24581433 - B2_Mm2 SINE B2 -8 187 1 1 1344 558 209 20 95 chr9 99494830 99494978 -24581194 + B1_Mur1 SINE Alu 13 149 0 1 1344 303 280 72 47 chr9 99495523 99495759 -24580413 - L1MEc LINE L1 -4142 2258 2017 1 1344 221 343 0 0 chr9 99495959 99496026 -24580146 - B1_Mus2 SINE Alu -78 69 3 1 1344 245 218 0 35 chr9 99495979 99496036 -24580136 - B4A SINE B4 -158 134 80 1 1344 422 289 82 20 chr9 99496037 99496330 -24579842 - L1MEc LINE L1 -4418 1982 1672 1 1344 2073 98 75 17 chr9 99496411 99496703 -24579469 - RLTR27 LTR ERVK 0 309 1 1 1344 1520 229 33 25 chr9 99496703 99497268 -24578904 - MMERVK10C-int LTR ERVK 0 7581 6907 1 1344 4578 309 35 40 chr9 99497315 99499911 -24576261 - MMERVK10C-int LTR ERVK -3872 3709 1127 1 1344 301 276 31 31 chr9 99500192 99500289 -24575883 + CT-rich Low_complexity Low_complexity 4 100 0 1 1344 333 85 40 60 chr9 99500490 99500540 -24575632 - MMERVK10C-int LTR ERVK -7318 263 222 2 1344 1711 119 16 4 chr9 99500565 99500817 -24575355 - RLTR27 LTR ERVK 0 309 55 3 1344 8386 24 7 3 chr9 99500818 99501784 -24574388 - L1Md_F3 LINE L1 0 6584 5615 4 1344 433 206 66 38 chr9 99501784 99501890 -24574282 - RLTR27 LTR ERVK -200 109 1 5 1344 25 51 0 0 chr9 99501966 99502005 -24574167 + AT_rich Low_complexity Low_complexity 1 39 0 6 1344 785 145 113 0 chr9 99502008 99502132 -24574040 - B1_Mus2 SINE Alu -8 139 2 7 1344 309 224 153 0 chr9 99502181 99502266 -24573906 - L1MC1 LINE L1 -28 6305 6208 8 1344 1063 291 38 12 chr9 99502272 99502313 -24573859 + Lx8 LINE L1 6973 7013 -460 9 1344 306 0 0 0 chr9 99502313 99502347 -24573825 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1344 1063 291 38 12 chr9 99502347 99502625 -24573547 + Lx8 LINE L1 7014 7300 -173 9 1344 2601 165 104 19 chr9 99502625 99502716 -24573456 - RLTR20B1 LTR ERVK 0 563 472 1 1344 330 98 0 0 chr9 99502716 99502767 -24573405 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1344 2601 165 104 19 chr9 99502767 99503194 -24572978 - RLTR20B1 LTR ERVK -92 471 2 1 1344 227 226 271 49 chr9 99503194 99503338 -24572834 + Lx8 LINE L1 7293 7468 -5 9 1344 300 248 68 22 chr9 99503453 99503565 -24572607 - B2_Mm2 SINE B2 -76 117 1 1 1344 530 350 26 9 chr9 99503578 99503806 -24572366 - L1MC1 LINE L1 -202 6131 5900 8 1344 1116 66 0 0 chr9 99503818 99503955 -24572217 + B1_Mus1 SINE Alu 1 137 -11 1 1344 236 30 0 29 chr9 99503955 99503989 -24572183 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1344 425 222 282 5 chr9 99504008 99504203 -24571969 - L1MC1 LINE L1 -640 5693 5445 8 1344 215 319 22 0 chr9 99504652 99504743 -24571429 + CT-rich Low_complexity Low_complexity 5 97 0 1 1344 656 151 19 12 chr9 99505166 99505327 -24570845 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 1 1344 1342 287 99 9 chr9 99505334 99505365 -24570807 - MLT2B2 LTR ERVL -23 492 460 1 1344 318 69 52 0 chr9 99505365 99505423 -24570749 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 1344 1342 287 99 9 chr9 99505423 99505824 -24570348 - MLT2B2 LTR ERVL -56 459 22 1 1344 1475 206 181 63 chr9 99506745 99507252 -24568920 - RMER2 LTR ERV1 0 567 1 2 1344 584 309 89 63 chr9 99507457 99507718 -24568454 + LTR16B2 LTR ERVL 105 369 -93 2 1344 1129 107 0 0 chr9 99507718 99507867 -24568305 + B1_Mur4 SINE Alu 1 149 -1 2 1344 576 42 0 0 chr9 99507867 99507938 -24568234 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1344 584 309 89 63 chr9 99507938 99508024 -24568148 + LTR16B2 LTR ERVL 370 461 -1 2 1344 496 221 47 28 chr9 99508296 99508403 -24567769 - RSINE1 SINE B4 -55 110 2 2 1344 1221 101 84 0 chr9 99508424 99508442 -24567730 - B2_Mm1a SINE B2 0 193 176 2 1344 207 0 0 0 chr9 99508442 99508465 -24567707 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 1344 1221 101 84 0 chr9 99508465 99508624 -24567548 - B2_Mm1a SINE B2 -18 175 2 2 1344 245 303 12 50 chr9 99508709 99508789 -24567383 - MLT1B LTR MaLR -11 379 303 2 1344 486 0 0 0 chr9 99508789 99508843 -24567329 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1344 335 274 67 50 chr9 99510188 99510307 -24565865 + L1MEg LINE L1 1882 2002 -4082 2 1344 26 40 0 20 chr9 99511087 99511119 -24565053 + AT_rich Low_complexity Low_complexity 1 32 0 3 1344 1230 54 0 0 chr9 99511119 99511266 -24564906 + B1_Mm SINE Alu 1 147 0 3 1344 26 40 0 20 chr9 99511266 99511284 -24564888 + AT_rich Low_complexity Low_complexity 1 18 0 3 1344 654 208 8 8 chr9 99511350 99511481 -24564691 - ID_B1 SINE B4 0 224 94 3 1344 267 31 0 0 chr9 99513072 99513104 -24563068 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1344 225 226 47 102 chr9 99513899 99514027 -24562145 + LTR50 LTR ERVL 148 268 -527 3 1344 268 347 21 5 chr9 99515084 99515218 -24560954 + PB1D10 SINE Alu 9 146 -2 3 1344 240 233 16 48 chr9 99515466 99515529 -24560643 - Cheshire DNA MER1_type -27 2393 2333 3 1344 688 255 78 57 chr9 99515623 99515937 -24560235 - MLT1D LTR MaLR -136 331 1 3 1344 656 176 87 8 chr9 99516601 99516727 -24559445 + B1_Mur2 SINE Alu 1 136 -13 3 1344 1237 88 35 0 chr9 99516763 99516911 -24559261 + B2_Mm2 SINE B2 1 148 -47 4 1344 828 57 0 0 chr9 99516911 99517017 -24559155 + (TA)n Simple_repeat Simple_repeat 1 106 0 4 1344 1237 88 35 0 chr9 99517017 99517038 -24559134 + B2_Mm2 SINE B2 149 174 -21 4 1344 198 91 0 0 chr9 99517868 99517901 -24558271 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 4 1344 4684 148 38 17 chr9 99517901 99518673 -24557499 - Lx5 LINE L1 -18 7032 6245 4 1344 478 277 270 45 chr9 99518899 99519561 -24556611 + L2a LINE L2 2606 3417 -9 4 1344 1356 79 0 45 chr9 99519700 99519859 -24556313 + B2_Mm2 SINE B2 1 157 -38 4 1344 423 0 0 0 chr9 99519859 99519906 -24556266 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 1344 1356 79 0 45 chr9 99519906 99519923 -24556249 + B2_Mm2 SINE B2 158 168 -27 4 1344 2362 56 30 0 chr9 99519923 99520227 -24555945 - L1Md_F2 LINE L1 -3 6579 6267 4 1344 1356 79 0 45 chr9 99520227 99520247 -24555925 + B2_Mm2 SINE B2 169 188 -7 4 1344 506 311 117 94 chr9 99521365 99521716 -24554456 - MLT1J LTR MaLR -42 470 112 4 1344 623 168 0 63 chr9 99521809 99521936 -24554236 - PB1D9 SINE Alu 0 120 2 4 1344 312 209 92 11 chr9 99521954 99522041 -24554131 - MLT1A1 LTR MaLR 0 408 315 5 1344 364 194 81 61 chr9 99522197 99522296 -24553876 - PB1D10 SINE Alu -12 105 5 5 1344 197 350 50 0 chr9 99522436 99522516 -24553656 - L2a LINE L2 0 3426 3343 5 1344 2679 32 0 0 chr9 99522975 99523287 -24552885 + L1Md_A LINE L1 6271 6582 0 5 1344 233 77 0 71 chr9 99523327 99523369 -24552803 + B1_Mm SINE Alu 109 147 0 5 1344 575 255 44 38 chr9 99523410 99523569 -24552603 + RSINE1 SINE B4 6 165 0 5 1344 21 36 0 0 chr9 99524136 99524164 -24552008 + AT_rich Low_complexity Low_complexity 1 28 0 5 1344 229 259 0 0 chr9 99524259 99524317 -24551855 - Lx8 LINE L1 -3 7470 7413 5 1344 876 121 0 0 chr9 99524320 99524461 -24551711 + (TCC)n Simple_repeat Simple_repeat 2 142 0 5 1344 1346 243 55 3 chr9 99524464 99524774 -24551398 - Lx8 LINE L1 -134 7339 7014 5 1344 547 214 0 45 chr9 99524774 99524902 -24551270 + B1_Mur1 SINE Alu 22 142 -7 5 1344 1305 259 16 61 chr9 99524985 99525363 -24550809 - Lx8 LINE L1 -766 6707 6347 5 1344 374 333 60 49 chr9 99525535 99525718 -24550454 + Charlie4a DNA MER1_type 62 246 -262 6 1344 189 0 0 0 chr9 99526176 99526197 -24549975 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1344 917 133 41 20 chr9 99526197 99526343 -24549829 - B1_Mur4 SINE Alu 0 150 2 6 1344 268 259 0 0 chr9 99526343 99526401 -24549771 - Charlie8 DNA MER1_type -2269 159 102 6 1344 210 91 0 0 chr9 99526877 99526910 -24549262 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1344 478 272 96 43 chr9 99527255 99527443 -24548729 - MIRb SINE MIR -38 230 33 6 1344 741 279 35 57 chr9 99527589 99527904 -24548268 - L1MB2 LINE L1 -8 6175 5868 6 1344 291 348 69 6 chr9 99527947 99528106 -24548066 - ORR1E LTR MaLR -183 176 8 6 1344 432 297 70 0 chr9 99528095 99528223 -24547949 + MLT1A0 LTR MaLR 48 184 -181 6 1344 261 0 0 0 chr9 99528325 99528354 -24547818 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1344 712 284 194 4 chr9 99528365 99528602 -24547570 + MLT1A0 LTR MaLR 84 365 0 7 1344 792 271 4 68 chr9 99528609 99528771 -24547401 - L1MB2 LINE L1 -320 5851 5702 6 1344 559 284 25 13 chr9 99528771 99528928 -24547244 - RSINE1 SINE B4 -4 161 3 7 1344 792 271 4 68 chr9 99528928 99528999 -24547173 - L1MB2 LINE L1 -470 5701 5633 6 1344 1849 157 16 22 chr9 99528999 99529318 -24546854 - ORR1C2 LTR MaLR 0 384 68 7 1344 402 285 0 5 chr9 99529321 99529425 -24546747 - L1MB2 LINE L1 -651 5589 5491 6 1344 1009 124 160 16 chr9 99530985 99531173 -24544999 - URR1A DNA MER1_type -11 215 1 7 1344 611 144 26 1 chr9 99531783 99531894 -24544278 - B1_Mur4 SINE Alu 0 127 1 7 1344 274 210 97 0 chr9 99531963 99532025 -24544147 + ID4 SINE ID 1 68 -15 7 1344 1192 68 0 0 chr9 99533290 99533436 -24542736 + B1_Mm SINE Alu 2 147 0 7 1344 192 152 91 0 chr9 99533456 99533489 -24542683 + MIRb SINE MIR 225 260 -8 7 1344 185 261 192 71 chr9 99533767 99533866 -24542306 + MIR SINE MIR 13 123 -139 7 1344 550 247 57 82 chr9 99533890 99533921 -24542251 - B2_Mm2 SINE B2 -4 191 155 7 1344 315 0 0 0 chr9 99533921 99533956 -24542216 + (TATG)n Simple_repeat Simple_repeat 4 38 0 8 1344 987 185 19 0 chr9 99533956 99534118 -24542054 - B3 SINE B2 -49 167 3 8 1344 405 0 0 0 chr9 99534220 99534265 -24541907 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1344 307 289 16 58 chr9 99534266 99534387 -24541785 - RSINE1 SINE B4 -36 129 14 8 1344 403 169 14 14 chr9 99534389 99534461 -24541711 - B4A SINE B4 -58 234 163 8 1344 348 305 45 45 chr9 99534458 99534592 -24541580 - ID_B1 SINE B4 -89 135 2 8 1344 180 0 0 0 chr9 99536107 99536127 -24540045 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1344 741 239 44 11 chr9 99536150 99536332 -24539840 - MTEb LTR MaLR -8 371 184 8 1344 552 222 0 0 chr9 99536343 99536451 -24539721 - MTEb LTR MaLR -256 123 16 8 1344 1174 219 15 38 chr9 99536572 99536838 -24539334 - MTC LTR MaLR -161 260 1 8 1344 222 91 0 0 chr9 99536877 99536910 -24539262 + (CAA)n Simple_repeat Simple_repeat 1 33 0 8 1344 1139 134 122 15 chr9 99536932 99537136 -24539036 - URR1A DNA MER1_type 0 226 1 9 1344 230 305 0 24 chr9 99537151 99537235 -24538937 + ID4 SINE ID 2 83 0 9 1344 348 254 2 0 chr9 99537328 99537412 -24538760 - MLT1J LTR MaLR -340 172 62 9 1344 1278 20 7 0 chr9 99538498 99538644 -24537528 - B1_Mus2 SINE Alu 0 147 1 9 1344 272 247 11 23 chr9 99538734 99538821 -24537351 + (TG)n Simple_repeat Simple_repeat 1 86 0 9 1344 447 19 0 0 chr9 99538821 99538873 -24537299 + (TA)n Simple_repeat Simple_repeat 1 52 0 9 1344 718 230 7 0 chr9 99539727 99539862 -24536310 - B1_Mur1 SINE Alu -5 144 9 9 1344 316 307 76 42 chr9 99539904 99540023 -24536149 - MLT1J LTR MaLR -334 178 56 9 1344 240 219 0 0 chr9 99540056 99540097 -24536075 - ID4_ SINE ID 0 83 43 9 1344 214 333 16 16 chr9 99540880 99540944 -24535228 + ID4_ SINE ID 7 70 -13 9 1344 402 21 0 0 chr9 99540948 99540995 -24535177 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1344 1236 48 0 0 chr9 99541096 99541241 -24534931 - B1_Mus1 SINE Alu 0 148 4 1 1344 216 339 16 50 chr9 99541459 99541580 -24534592 - PB1D10 SINE Alu 0 117 1 1 1344 416 338 21 14 chr9 99541580 99541616 -24534556 - ID SINE ID -143 81 45 1 1344 346 321 71 24 chr9 99541630 99541799 -24534373 - L1ME4a LINE L1 -280 5844 5668 1 1344 751 272 21 16 chr9 99541852 99541900 -24534272 - B3A SINE B2 0 198 150 1 1344 267 31 0 0 chr9 99541900 99541932 -24534240 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1344 751 272 21 16 chr9 99541932 99542077 -24534095 - B3A SINE B2 -49 149 5 1 1344 264 279 0 0 chr9 99543180 99543241 -24532931 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1344 1170 106 6 6 chr9 99543328 99543343 -24532829 - B2_Mm2 SINE B2 -24 171 156 1 1344 368 36 0 51 chr9 99543343 99543402 -24532770 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 1 1344 1170 106 6 6 chr9 99543402 99543557 -24532615 - B2_Mm2 SINE B2 -40 155 1 1 1344 714 241 45 11 chr9 99543588 99543764 -24532408 - B3A SINE B2 -15 183 2 1 1344 396 0 0 0 chr9 99543781 99543825 -24532347 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 1344 795 169 29 0 chr9 99543825 99543961 -24532211 - B1_Mm SINE Alu -4 143 4 1 1344 661 315 28 71 chr9 99543961 99544143 -24532029 - B4A SINE B4 -54 238 52 1 1344 1263 94 0 0 chr9 99544143 99544323 -24531849 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1 1344 661 315 28 71 chr9 99544323 99544335 -24531837 - B4A SINE B4 -241 51 51 1 1344 426 248 16 33 chr9 99544335 99544456 -24531716 - PB1D9 SINE Alu -1 119 1 1 1344 661 315 28 71 chr9 99544456 99544509 -24531663 - B4A SINE B4 -241 51 1 1 1344 305 295 46 37 chr9 99544592 99544701 -24531471 + MIR SINE MIR 45 154 -108 1 1344 494 263 52 8 chr9 99544963 99545097 -24531075 - B1F2 SINE Alu -8 141 2 1 1344 252 0 0 0 chr9 99545163 99545191 -24530981 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1344 282 308 134 30 chr9 99545227 99545361 -24530811 - MIR SINE MIR -107 161 14 1 1344 306 167 9 29 chr9 99545661 99545766 -24530406 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 1 1344 888 62 0 0 chr9 99546967 99547095 -24529077 + (TC)n Simple_repeat Simple_repeat 2 129 0 1 1344 25 0 0 0 chr9 99547325 99547350 -24528822 + GC_rich Low_complexity Low_complexity 1 25 0 1 1344 225 0 0 0 chr9 99547866 99547891 -24528281 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1344 1629 219 94 8 chr9 99548302 99548674 -24527498 - MTD LTR MaLR -12 407 4 1 1344 647 239 116 105 chr9 99548734 99549019 -24527153 + B4A SINE B4 5 292 0 1 1344 244 240 0 51 chr9 99549060 99549139 -24527033 + T-rich Low_complexity Low_complexity 2 76 0 1 1344 275 53 0 0 chr9 99549170 99549208 -24526964 - B2_Mm2 SINE B2 -156 39 2 1 1344 805 210 20 79 chr9 99549371 99549573 -24526599 - B3A SINE B2 -1 197 8 1 1344 1124 108 91 0 chr9 99550997 99551173 -24524999 + B2_Mm2 SINE B2 1 192 -3 1 1344 246 269 51 0 chr9 99551696 99551774 -24524398 - MIRb SINE MIR -37 231 150 1 1344 1087 163 92 15 chr9 99551791 99551997 -24524175 - URR1A DNA MER1_type 0 226 5 1 1344 3474 139 22 48 chr9 99552469 99553059 -24523113 - RMER15 LTR ERVL 0 575 1 1 1344 2524 154 29 12 chr9 99553654 99554068 -24522104 + MTC LTR MaLR 1 421 0 1 1344 738 237 65 5 chr9 99554120 99554319 -24521853 - B3 SINE B2 -5 211 1 1 1344 404 299 18 77 chr9 99555698 99555868 -24520304 - MIRb SINE MIR -108 160 1 1 1344 426 20 0 0 chr9 99556095 99556146 -24520026 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1344 776 147 78 94 chr9 99556148 99556328 -24519844 - B2_Mm2 SINE B2 -18 177 1 1 1344 253 320 51 45 chr9 99556762 99556919 -24519253 + MER5A DNA MER1_type 19 176 -13 1 1344 193 400 0 0 chr9 99557001 99557081 -24519091 + MER5B DNA MER1_type 91 170 -8 1 1344 301 244 60 142 chr9 99557107 99557241 -24518931 - MER5A DNA MER1_type -28 161 39 1 1344 271 294 159 48 chr9 99557432 99557449 -24518723 + Lx8 LINE L1 7045 7056 -417 1 1344 2489 107 0 6 chr9 99557449 99557797 -24518375 - ORR1A1 LTR MaLR 0 346 1 1 1344 271 294 159 48 chr9 99557797 99557968 -24518204 + Lx8 LINE L1 7057 7254 -219 1 1344 352 287 26 9 chr9 99557972 99558088 -24518084 + RMER15 LTR ERVL 422 539 -36 1 1344 1081 150 119 10 chr9 99558182 99558384 -24517788 + URR1A DNA MER1_type 2 225 -1 1 1344 396 0 0 0 chr9 99558588 99558632 -24517540 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1344 4588 123 9 1 chr9 99558633 99559303 -24516869 - RLTR33 LTR ERVK -2 676 2 1 1344 324 184 222 33 chr9 99560238 99560328 -24515844 - PB1D10 SINE Alu -13 107 1 1 1344 385 313 93 17 chr9 99561826 99562063 -24514109 + MER113A DNA MER1_type 22 276 -38 1 1344 455 75 15 15 chr9 99562376 99562444 -24513728 + URR1A DNA MER1_type 158 225 -1 1 1344 194 268 0 0 chr9 99565079 99565120 -24511052 + MIRm SINE MIR 223 263 -13 1 1344 533 239 115 12 chr9 99565159 99565324 -24510848 - B3A SINE B2 -16 182 1 1 1344 225 0 0 0 chr9 99565454 99565479 -24510693 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1344 290 162 48 119 chr9 99565574 99565658 -24510514 - MTEa LTR MaLR -301 78 1 1 1344 249 33 0 0 chr9 99565851 99565881 -24510291 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1 1344 486 0 0 0 chr9 99565980 99566034 -24510138 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1344 198 0 0 0 chr9 99566984 99567006 -24509166 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1344 189 0 0 0 chr9 99567006 99567026 -24509146 + (TAG)n Simple_repeat Simple_repeat 2 22 0 1 1344 207 0 0 0 chr9 99567381 99567404 -24508768 + (C)n Simple_repeat Simple_repeat 1 23 0 1 1344 818 269 33 131 chr9 99568786 99569206 -24506966 - MTE2a LTR MaLR 0 379 1 1 1344 37 0 0 0 chr9 99569407 99569444 -24506728 + AT_rich Low_complexity Low_complexity 1 37 0 1 1344 835 147 0 8 chr9 99569444 99569574 -24506598 - B1_Mus2 SINE Alu 0 147 19 1 1344 318 300 49 84 chr9 99569451 99569593 -24506579 - B4A SINE B4 -71 221 85 1 1344 2063 107 118 56 chr9 99569902 99570258 -24505914 - ORR1C1 LTR MaLR 0 378 1 1 1344 677 292 113 100 chr9 99570879 99571429 -24504743 - RLTR18 LTR ERVK -95 521 64 1 1344 403 347 52 0 chr9 99571869 99572042 -24504130 - MLT2B3 LTR ERVL -122 432 251 1 1344 719 271 104 75 chr9 99573022 99573357 -24502815 - ORR1E LTR MaLR 0 359 15 1 1344 261 119 0 0 chr9 99573399 99573441 -24502731 + (CAT)n Simple_repeat Simple_repeat 3 44 0 1 1344 606 258 143 39 chr9 99573450 99573708 -24502464 - L1MB3 LINE L1 -105 6078 5794 1 1344 291 179 0 88 chr9 99573714 99573807 -24502365 + B3A SINE B2 1 80 -115 1 1344 540 167 0 100 chr9 99573911 99574031 -24502141 + B3 SINE B2 104 211 -5 1 1344 309 220 41 99 chr9 99574111 99574232 -24501940 + L1MA5 LINE L1 6187 6300 0 1 1344 1050 122 7 7 chr9 99574393 99574542 -24501630 + B1_Mur4 SINE Alu 1 149 -1 1 1344 332 234 72 36 chr9 99575438 99575557 -24500615 - ORR1E LTR MaLR -240 119 4 1 1344 254 50 25 0 chr9 99575826 99575866 -24500306 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1344 1417 30 0 0 chr9 99575866 99576030 -24500142 - B2_Mm1a SINE B2 -28 165 2 1 1344 312 221 240 0 chr9 99576580 99576684 -24499488 - FordPrefect DNA Tip100 -475 1208 1080 1 1344 2752 167 47 50 chr9 99576718 99576906 -24499266 + RMER5 LTR ERV1 1 178 -356 1 1344 656 24 12 0 chr9 99576906 99576988 -24499184 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1344 1092 78 7 0 chr9 99576988 99577129 -24499043 - B1_Mus2 SINE Alu -5 142 1 1 1344 2752 167 47 50 chr9 99577129 99577279 -24498893 + RMER5 LTR ERV1 179 331 -203 1 1344 3625 18 0 0 chr9 99577279 99577675 -24498497 - MTA_Mm LTR MaLR 0 396 1 1 1344 9782 20 0 0 chr9 99577675 99578773 -24497399 - MTA_Mm-int LTR MaLR 0 1098 1 1 1344 3557 23 2 0 chr9 99578773 99579168 -24497004 - MTA_Mm LTR MaLR 0 396 1 1 1344 2752 167 47 50 chr9 99579168 99579361 -24496811 + RMER5 LTR ERV1 332 530 -4 1 1344 312 263 20 50 chr9 99579405 99579505 -24496667 - FordPrefect DNA Tip100 -660 1023 927 1 1344 1195 107 0 12 chr9 99579539 99579710 -24496462 + B2_Mm1t SINE B2 20 188 -5 1 1344 2720 51 42 19 chr9 99581222 99581599 -24494573 + L1_Mus4 LINE L1 6251 6636 0 1 1344 215 323 96 75 chr9 99582207 99582407 -24493765 + MIRb SINE MIR 57 261 -7 1 1344 240 246 0 62 chr9 99582420 99582485 -24493687 + L2c LINE L2 3318 3378 -9 1 1344 237 364 107 85 chr9 99583203 99583569 -24492603 - LTR88c LTR Genie? -488 374 1 1 1344 347 105 0 95 chr9 99584146 99584209 -24491963 + B1_Mm SINE Alu 91 147 0 1 1344 357 125 0 0 chr9 99584209 99584244 -24491928 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1344 1156 54 0 13 chr9 99584244 99584393 -24491779 + B1_Mus2 SINE Alu 1 147 0 1 1344 357 125 0 0 chr9 99584393 99584429 -24491743 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1344 514 212 16 63 chr9 99584599 99584725 -24491447 - PB1D9 SINE Alu 0 120 1 1 1344 325 333 53 33 chr9 99584807 99584959 -24491213 - HAL1-3A_ME LINE L1 -420 2438 2284 1 1344 186 150 0 0 chr9 99584969 99585009 -24491163 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1344 227 272 27 72 chr9 99585885 99585996 -24490176 + MLT1A1 LTR MaLR 117 222 -186 1 1344 293 315 34 0 chr9 99586487 99586576 -24489596 - MER81 DNA AcHobo -17 97 6 1 1344 695 206 15 0 chr9 99586720 99587077 -24489095 + (TTAGGG)n Simple_repeat Simple_repeat 1 362 0 1 1344 1493 43 11 16 chr9 99587705 99587894 -24488278 + B2_Mm2 SINE B2 2 189 -6 1 1344 655 213 56 7 chr9 99588199 99588341 -24487831 - B1_Mur1 SINE Alu 0 149 1 1 1344 289 236 19 0 chr9 99588498 99588604 -24487568 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 1344 615 304 36 73 chr9 99588604 99588906 -24487266 - B4A SINE B4 0 292 2 1 1344 1373 89 5 5 chr9 99588972 99589163 -24487009 - B2_Mm1t SINE B2 0 193 3 1 1344 200 276 17 17 chr9 99589699 99589758 -24486414 + CT-rich Low_complexity Low_complexity 3 61 0 1 1344 250 206 14 29 chr9 99590158 99590228 -24485944 + GA-rich Low_complexity Low_complexity 1 69 0 2 1344 215 238 0 0 chr9 99590735 99590777 -24485395 - MIRc SINE MIR -112 156 115 2 1344 189 0 0 0 chr9 99591175 99591196 -24484976 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 2 1344 290 115 19 0 chr9 99593792 99593844 -24482328 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 2 1344 1035 152 0 0 chr9 99593850 99594028 -24482144 + CT-rich Low_complexity Low_complexity 3 180 0 2 1344 1326 78 0 0 chr9 99594034 99594214 -24481958 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1344 555 246 49 22 chr9 99594219 99594361 -24481811 - ID_B1 SINE B4 -14 210 70 2 1344 216 97 0 0 chr9 99594385 99594416 -24481756 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1344 743 282 146 62 chr9 99594597 99594679 -24481493 + MLT1A1 LTR MaLR 1 88 -320 2 1344 694 159 0 164 chr9 99594679 99594791 -24481381 + B1_Mus1 SINE Alu 5 106 -42 2 1344 1676 36 0 0 chr9 99594791 99594984 -24481188 + B2_Mm1a SINE B2 1 193 0 2 1344 694 159 0 164 chr9 99594984 99595036 -24481136 + B1_Mus1 SINE Alu 107 142 -6 2 1344 743 282 146 62 chr9 99595036 99595324 -24480848 + MLT1A1 LTR MaLR 89 402 -6 2 1344 2061 170 86 124 chr9 99595400 99595990 -24480182 + RLTR12A LTR ERVK 1 568 0 2 1344 318 269 138 46 chr9 99596039 99596191 -24479981 - MER20 DNA MER1_type -24 195 30 2 1344 239 333 89 24 chr9 99596834 99596957 -24479215 + ORR1E LTR MaLR 15 145 -214 2 1344 271 319 0 0 chr9 99596954 99597023 -24479149 - MER81 DNA AcHobo -40 74 6 1 1344 869 126 0 7 chr9 99597040 99597184 -24478988 + (TTTC)n Simple_repeat Simple_repeat 3 145 0 2 1344 1139 105 0 0 chr9 99597192 99597344 -24478828 - B2_Mm2 SINE B2 -43 152 1 2 1344 1129 157 86 0 chr9 99597691 99597888 -24478284 + B3 SINE B2 3 216 0 2 1344 253 259 241 0 chr9 99597950 99598058 -24478114 + L2a LINE L2 3293 3426 0 2 1344 378 0 0 0 chr9 99599060 99599102 -24477070 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1344 324 0 0 0 chr9 99600631 99600667 -24475505 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1344 535 285 32 0 chr9 99601525 99601648 -24474524 - B1F SINE Alu 0 149 23 2 1344 508 274 219 69 chr9 99603799 99604105 -24472067 + MLT1A1 LTR MaLR 38 389 -19 2 1344 851 110 7 0 chr9 99604457 99604544 -24471628 + (TTCTC)n Simple_repeat Simple_repeat 1 87 0 2 1344 1517 17 0 6 chr9 99604544 99604725 -24471447 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1344 851 110 7 0 chr9 99604725 99604773 -24471399 + (TTCTC)n Simple_repeat Simple_repeat 2 50 0 2 1344 572 232 7 0 chr9 99604751 99604902 -24471270 + CT-rich Low_complexity Low_complexity 4 155 0 2 1344 219 45 43 22 chr9 99606051 99606097 -24470075 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 1344 817 0 0 0 chr9 99606097 99606191 -24469981 - B1_Mm SINE Alu -12 135 42 2 1344 262 178 112 56 chr9 99606128 99606143 -24470029 - RLTR25B LTR ERVK -519 509 478 2 1344 292 93 0 53 chr9 99606143 99606200 -24469972 - 4.5SRNA scRNA scRNA -8 86 33 2 1344 262 178 112 56 chr9 99606200 99606235 -24469937 - RLTR25B LTR ERVK -519 477 397 2 1344 258 159 0 0 chr9 99606249 99606318 -24469854 + CT-rich Low_complexity Low_complexity 112 180 0 2 1344 409 68 0 33 chr9 99606321 99606382 -24469790 - B1_Mur4 SINE Alu -90 60 2 2 1344 330 103 40 81 chr9 99606382 99606393 -24469779 - ID_B1 SINE B4 -77 145 77 2 1344 264 325 12 70 chr9 99607104 99607190 -24468982 + ID2 SINE ID 1 81 -2 2 1344 280 300 58 8 chr9 99607395 99607516 -24468656 + MLT1J1 LTR MaLR 99 225 -186 2 1344 303 289 11 53 chr9 99607552 99607647 -24468525 + MLT1J1 LTR MaLR 348 438 -6 2 1344 181 291 54 18 chr9 99607914 99607970 -24468202 - L2b LINE L2 -8 3367 3310 2 1344 420 37 0 0 chr9 99611138 99611192 -24464980 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1344 229 303 71 39 chr9 99612855 99612982 -24463190 - L1M5 LINE L1 -383 5741 5611 2 1344 1017 214 19 0 chr9 99613073 99613279 -24462893 + B3 SINE B2 7 216 0 2 1344 405 276 76 32 chr9 99613391 99613548 -24462624 - RSINE1 SINE B4 -1 164 1 2 1344 432 250 51 17 chr9 99613589 99613707 -24462465 + B1_Mus2 SINE Alu 2 123 -24 2 1344 208 197 127 32 chr9 99613946 99614009 -24462163 + L2c LINE L2 3313 3381 -6 2 1344 32 75 0 0 chr9 99614111 99614178 -24461994 + AT_rich Low_complexity Low_complexity 1 67 0 2 1344 308 278 54 31 chr9 99614581 99614711 -24461461 + MIR SINE MIR 56 188 -74 2 20 25 51 0 0 chr9 99614719 99614758 -24461414 + AT_rich Low_complexity Low_complexity 1 39 0 2 1345 24 0 0 0 chr9 99614845 99614869 -24461303 + AT_rich Low_complexity Low_complexity 1 24 0 2 1345 302 145 0 31 chr9 99615118 99615182 -24460990 + CT-rich Low_complexity Low_complexity 3 64 0 2 1345 221 245 19 0 chr9 99615368 99615421 -24460751 + L2b LINE L2 3322 3375 0 2 1345 1358 152 9 13 chr9 99615636 99615862 -24460310 + URR1B DNA MER1_type 1 225 0 2 1345 1612 304 66 5 chr9 99618117 99618725 -24457447 + MER82 DNA MER2_type 2 646 -7 2 1345 302 336 24 16 chr9 99618873 99619000 -24457172 + MIRb SINE MIR 34 161 -107 2 1345 528 242 87 92 chr9 99619319 99619537 -24456635 - B4A SINE B4 -75 217 1 2 1345 187 0 0 158 chr9 99619639 99619785 -24456387 + (CTATT)n Simple_repeat Simple_repeat 4 126 0 2 1345 529 304 6 29 chr9 99619793 99619966 -24456206 - ID_B1 SINE B4 -3 221 53 2 1345 319 372 9 0 chr9 99619962 99620075 -24456097 + LTR85b LTR Gypsy? 635 748 -36 2 1345 288 208 21 10 chr9 99620185 99620282 -24455890 + CT-rich Low_complexity Low_complexity 2 99 0 2 1345 234 247 191 17 chr9 99621345 99621518 -24454654 - Charlie18a DNA MER1_type -2 340 138 2 1345 1245 222 13 32 chr9 99622149 99622461 -24453711 + MTD LTR MaLR 1 306 -113 2 1345 986 246 5 5 chr9 99622488 99622692 -24453480 + B3 SINE B2 3 206 -10 2 1345 285 313 95 31 chr9 99622943 99623269 -24452903 + L1MEg LINE L1 1329 1675 -4567 2 1345 757 239 78 110 chr9 99623268 99623482 -24452690 + L1MEg LINE L1 3983 4216 -1930 2 1345 419 52 17 0 chr9 99623482 99623540 -24452632 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1345 757 239 78 110 chr9 99623540 99623569 -24452603 + L1MEg LINE L1 4217 4226 -1920 2 1345 205 29 59 0 chr9 99623569 99623603 -24452569 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2 1345 1158 35 43 0 chr9 99623606 99623747 -24452425 - B1_Mm SINE Alu 0 147 1 2 1345 757 239 78 110 chr9 99623747 99623944 -24452228 + L1MEg LINE L1 4227 4414 -1732 2 1345 619 268 78 53 chr9 99623944 99624228 -24451944 + B4 SINE B4 2 292 0 2 1345 434 196 9 0 chr9 99624229 99624341 -24451831 + (CA)n Simple_repeat Simple_repeat 2 114 0 2 1345 23 0 0 0 chr9 99624421 99624444 -24451728 + AT_rich Low_complexity Low_complexity 1 23 0 2 1345 262 231 73 52 chr9 99624558 99624654 -24451518 + L1MEg LINE L1 4480 4577 -1569 2 1345 505 170 0 21 chr9 99624749 99624845 -24451327 - B1_Mur1 SINE Alu -21 128 35 2 1345 1510 287 61 11 chr9 99624846 99625367 -24450805 + L1MEg LINE L1 4614 5160 -986 2 1345 875 291 53 34 chr9 99626195 99626515 -24449657 + L1MC1 LINE L1 6000 6325 -8 2 1345 25 51 0 0 chr9 99626517 99626556 -24449616 + AT_rich Low_complexity Low_complexity 1 39 0 2 1345 674 279 55 14 chr9 99627047 99627265 -24448907 - MTD LTR MaLR -192 227 1 2 1345 274 300 7 7 chr9 99627762 99627903 -24448269 + G-rich Low_complexity Low_complexity 5 145 0 2 1345 642 207 0 16 chr9 99627874 99628056 -24448116 + GA-rich Low_complexity Low_complexity 1 179 0 2 1345 336 250 0 48 chr9 99628634 99628718 -24447454 + RSINE1 SINE B4 86 165 0 2 1345 285 294 24 0 chr9 99628980 99629065 -24447107 - MER5A1 DNA MER1_type -36 130 44 2 1345 446 243 54 117 chr9 99629116 99629321 -24446851 - MER53 DNA hAT -1 192 1 2 1345 303 289 167 5 chr9 99629341 99629539 -24446633 - Charlie5 DNA MER1_type -24 2600 2371 2 1345 23 0 0 0 chr9 99629830 99629853 -24446319 + AT_rich Low_complexity Low_complexity 1 23 0 2 1345 325 133 16 2 chr9 99629867 99629931 -24446241 - B2_Mm2 SINE B2 -107 109 47 2 1345 869 99 40 60 chr9 99629962 99630112 -24446060 - B2_Mm1t SINE B2 -46 147 1 2 1345 204 222 0 36 chr9 99630209 99630265 -24445907 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1345 423 248 69 15 chr9 99631849 99631980 -24444192 - RSINE1 SINE B4 -17 148 11 2 1345 315 0 0 0 chr9 99632148 99632183 -24443989 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1345 571 277 229 0 chr9 99632194 99632425 -24443747 - B4A SINE B4 -8 284 1 2 1345 772 315 80 27 chr9 99633196 99633532 -24442640 - Lx8 LINE L1 -31 7442 7089 2 1345 386 242 75 0 chr9 99633528 99633648 -24442524 + Lx7 LINE L1 6750 6878 -818 2 1345 900 277 57 17 chr9 99633681 99634030 -24442142 - L1M2 LINE L1 -1763 4380 4018 2 1345 1058 224 96 42 chr9 99634045 99634493 -24441679 - L1_Mur3 LINE L1 -2402 3478 3007 2 1345 1080 105 23 0 chr9 99634501 99634672 -24441500 - B2_Mm2 SINE B2 -18 177 3 2 1345 873 256 63 44 chr9 99634680 99635047 -24441125 - L1_Mur3 LINE L1 -2879 3001 2628 2 1345 802 227 6 0 chr9 99635062 99635234 -24440938 - B3 SINE B2 0 216 44 2 1345 628 238 354 6 chr9 99635247 99635562 -24440610 - L1_Mur3 LINE L1 -3227 2653 2229 2 1345 492 247 137 19 chr9 99635600 99635761 -24440411 - B3A SINE B2 -18 180 1 2 1345 342 295 21 21 chr9 99635883 99635980 -24440192 - PB1D10 SINE Alu -9 108 12 2 1345 705 240 33 28 chr9 99636010 99636197 -24439975 - B3 SINE B2 0 216 8 2 1345 2895 33 0 3 chr9 99636200 99636538 -24439634 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1345 56895 24 11 7 chr9 99636538 99642987 -24433185 + IAPEz-int LTR ERVK 8 6481 0 2 1345 2895 33 0 3 chr9 99642987 99643325 -24432847 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1345 554 336 119 11 chr9 99643375 99643736 -24432436 - MER97c DNA MER1_type? -461 629 230 2 1345 189 0 0 0 chr9 99644119 99644140 -24432032 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1345 484 260 39 0 chr9 99645762 99645889 -24430283 - RSINE1 SINE B4 -12 153 22 2 1345 258 306 89 139 chr9 99646036 99646278 -24429894 + MLT2B3 LTR ERVL 193 406 -311 2 1345 1152 188 9 18 chr9 99646278 99646495 -24429677 - B3 SINE B2 -1 215 1 2 1345 345 306 89 139 chr9 99646495 99646699 -24429473 + MLT2B3 LTR ERVL 407 617 -100 2 1345 803 258 16 133 chr9 99646756 99647064 -24429108 - B4A SINE B4 0 292 21 2 1345 483 209 54 18 chr9 99647817 99647929 -24428243 + PB1D7 SINE Alu 3 118 -2 2 1345 21 36 0 0 chr9 99647929 99647957 -24428215 + AT_rich Low_complexity Low_complexity 1 28 0 3 1345 221 216 20 0 chr9 99648051 99648102 -24428070 + PB1D10 SINE Alu 40 91 -26 3 1345 2942 198 233 46 chr9 99648678 99649524 -24426648 - RMER1A Other Other -4 1026 23 3 1345 731 276 115 12 chr9 99649528 99649804 -24426368 - RMER1A Other Other -587 479 75 3 1345 1632 232 131 25 chr9 99649801 99650187 -24425985 - RMER1B Other Other -499 567 1 3 1345 330 26 0 0 chr9 99650187 99650226 -24425946 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1345 252 0 0 0 chr9 99650226 99650253 -24425919 + (CG)n Simple_repeat Simple_repeat 2 29 0 3 1345 1632 238 63 93 chr9 99650253 99650659 -24425513 - RMER1B Other Other -604 462 48 3 1345 1117 96 114 0 chr9 99652025 99652191 -24423981 - B2_Mm2 SINE B2 -10 185 1 3 1345 253 367 0 0 chr9 99652369 99652448 -24423724 - L2b LINE L2 -5 3370 3292 3 1345 417 97 0 0 chr9 99652582 99652654 -24423518 + (TCTG)n Simple_repeat Simple_repeat 3 74 0 3 1345 501 17 0 0 chr9 99652654 99652712 -24423460 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 1345 245 303 19 57 chr9 99652724 99652829 -24423343 - B3A SINE B2 -55 143 43 3 1345 596 280 34 105 chr9 99653144 99653576 -24422596 + L1MC5 LINE L1 6722 7104 -857 3 1345 271 23 70 0 chr9 99653913 99653956 -24422216 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 3 1345 678 242 18 24 chr9 99653957 99654122 -24422050 - RSINE1 SINE B4 0 165 2 3 1345 255 0 0 136 chr9 99654347 99654457 -24421715 + (CTAAT)n Simple_repeat Simple_repeat 4 98 0 3 1345 272 221 51 13 chr9 99654501 99654579 -24421593 + L1MC5 LINE L1 7834 7914 -47 3 1345 249 250 0 0 chr9 99654603 99654659 -24421513 + ID2 SINE ID 1 56 -27 3 1345 318 275 12 12 chr9 99654966 99655047 -24421125 - RSINE1 SINE B4 -33 132 52 3 1345 361 333 141 35 chr9 99655373 99655856 -24420316 - MLT1G3 LTR MaLR -58 537 4 3 1345 457 188 0 0 chr9 99655997 99656077 -24420095 - ID4_ SINE ID -3 80 1 3 1345 1941 166 43 11 chr9 99656665 99657013 -24419159 - RLTR15 LTR ERVK 0 359 1 3 1345 365 293 20 113 chr9 99657085 99657289 -24418883 + MLT1E2 LTR MaLR 92 276 -351 3 1345 4509 10 2 0 chr9 99657309 99657801 -24418371 - MT2_Mm LTR ERVL 0 493 1 3 1345 321 0 0 0 chr9 99657801 99657839 -24418333 - MERVL-int LTR ERVL 0 5485 5448 3 1345 362 167 46 35 chr9 99657839 99657926 -24418246 - ORR1A3-int LTR MaLR -1323 640 553 3 1345 48373 16 6 0 chr9 99657926 99663252 -24412920 - MERVL-int LTR ERVL -125 5360 1 3 1345 4509 10 2 0 chr9 99663252 99663744 -24412428 - MT2_Mm LTR ERVL 0 493 1 3 1345 272 154 0 0 chr9 99663893 99663945 -24412227 + URR1B DNA MER1_type 174 225 0 3 1345 198 0 0 0 chr9 99664391 99664413 -24411759 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1345 1236 41 7 0 chr9 99664597 99664744 -24411428 + B1_Mus1 SINE Alu 1 148 0 3 1345 207 0 0 0 chr9 99664746 99664769 -24411403 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1345 1914 46 0 93 chr9 99664769 99665082 -24411090 - RLTR10B LTR ERVK 0 292 9 3 1345 1539 229 80 5 chr9 99665271 99665644 -24410528 + MTD LTR MaLR 18 418 -1 3 1345 745 205 44 157 chr9 99665767 99666016 -24410156 + ID_B1 SINE B4 4 224 0 3 1345 332 303 99 58 chr9 99666097 99666400 -24409772 - MLT1J LTR MaLR -99 413 57 3 1345 249 360 30 0 chr9 99668846 99668861 -24407311 + ID_B1 SINE B4 73 175 -49 3 1345 293 244 25 10 chr9 99668861 99668946 -24407226 + PB1D10 SINE Alu 9 97 -52 3 1345 429 141 0 0 chr9 99669002 99669073 -24407099 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1345 360 0 0 0 chr9 99669821 99669861 -24406311 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1345 203 147 0 0 chr9 99669861 99669895 -24406277 + (CCA)n Simple_repeat Simple_repeat 2 35 0 3 1345 795 220 53 29 chr9 99672191 99672397 -24403775 + B3 SINE B2 2 212 -4 3 1345 241 314 23 0 chr9 99673419 99673505 -24402667 + MIRb SINE MIR 101 188 -80 3 1345 24 0 0 0 chr9 99674005 99674029 -24402143 + AT_rich Low_complexity Low_complexity 1 24 0 3 1345 576 0 0 0 chr9 99675965 99676029 -24400143 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 3 1345 667 271 64 57 chr9 99676030 99676431 -24399741 - L1M2 LINE L1 -2694 3449 3045 3 1345 1347 84 20 26 chr9 99676431 99676626 -24399546 - B2_Mm2 SINE B2 0 195 2 3 1345 667 271 64 57 chr9 99676626 99676752 -24399420 - L1M2 LINE L1 -3099 3044 2918 3 1345 826 168 245 10 chr9 99676771 99676975 -24399197 + RMER19B LTR ERVK 309 560 -342 3 1345 1307 103 0 5 chr9 99676977 99677162 -24399010 - B2_Mm2 SINE B2 -8 187 4 3 1345 571 154 17 8 chr9 99677162 99677280 -24398892 - L1_Mur2 LINE L1 -3557 2320 2202 3 1345 376 317 24 0 chr9 99677300 99677423 -24398749 - MTE2b LTR MaLR -251 128 3 3 1345 511 278 69 0 chr9 99677911 99678047 -24398125 + RSINE1 SINE B4 3 148 -17 3 1345 417 20 0 0 chr9 99678047 99678097 -24398075 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1345 725 244 223 21 chr9 99678131 99678478 -24397694 - L1MB3 LINE L1 -1 6179 5770 3 1345 294 29 0 0 chr9 99678478 99678513 -24397659 + (CATA)n Simple_repeat Simple_repeat 2 36 0 3 1345 725 269 100 32 chr9 99678513 99678628 -24397544 - L1MB3 LINE L1 -414 5769 5643 3 1345 656 287 109 85 chr9 99678690 99679056 -24397116 - MTE2a LTR MaLR -2 377 3 3 1345 721 285 74 131 chr9 99679420 99680154 -24396018 + Charlie7 DNA MER1_type 416 1107 -1505 3 1345 551 206 116 75 chr9 99680328 99680501 -24395671 - B3A SINE B2 -16 182 3 3 1345 202 267 0 62 chr9 99680692 99680804 -24395368 + GA-rich Low_complexity Low_complexity 1 105 0 3 1345 739 304 21 51 chr9 99680878 99681267 -24394905 + Lx9 LINE L1 7140 7516 -128 3 1345 3515 28 0 0 chr9 99684563 99684959 -24391213 + MTA_Mm LTR MaLR 1 396 0 3 1345 522 225 0 0 chr9 99685669 99685811 -24390361 + (CA)n Simple_repeat Simple_repeat 1 142 0 3 1345 2268 192 77 9 chr9 99685936 99686388 -24389784 + RMER1B Other Other 374 856 -210 3 1345 647 283 0 6 chr9 99686390 99686550 -24389622 - B3 SINE B2 -57 159 1 3 1345 212 0 0 35 chr9 99686581 99686610 -24389562 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1345 412 307 40 0 chr9 99687042 99687143 -24389029 + RSINE1 SINE B4 61 165 0 3 1345 303 244 24 24 chr9 99687146 99687230 -24388942 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 3 1345 260 339 0 9 chr9 99687242 99687358 -24388814 + L1MD LINE L1 2111 2225 -3921 3 1345 485 330 129 8 chr9 99687359 99687622 -24388550 - MTEa LTR MaLR 0 379 85 3 1345 332 94 19 0 chr9 99687655 99687708 -24388464 + (TCTG)n Simple_repeat Simple_repeat 3 56 0 3 1345 328 231 15 0 chr9 99687712 99687777 -24388395 - B3A SINE B2 -41 157 92 3 1345 8884 121 1 2 chr9 99687874 99689195 -24386977 - L1_Mm LINE L1 -431 5452 4133 3 1345 371 270 111 39 chr9 99689205 99689490 -24386682 + L1MD LINE L1 2906 3242 -2904 3 1345 284 328 79 20 chr9 99689586 99689788 -24386384 + L1MD LINE L1 3361 3574 -2572 3 1345 563 301 68 53 chr9 99689816 99689863 -24386309 - RMER15 LTR ERVL -2 573 533 3 1345 351 0 0 0 chr9 99689863 99689902 -24386270 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1345 563 301 68 53 chr9 99689902 99690135 -24386037 - RMER15 LTR ERVL -43 532 289 3 1345 315 308 53 47 chr9 99690333 99690483 -24385689 + L1MD LINE L1 3614 3764 -2382 3 1345 359 206 14 0 chr9 99690510 99690583 -24385589 + L1MA7 LINE L1 5786 5859 -432 3 1345 1130 256 40 14 chr9 99690611 99690963 -24385209 + L1MA7 LINE L1 5919 6279 -12 3 1345 188 257 14 0 chr9 99690969 99691039 -24385133 + GA-rich Low_complexity Low_complexity 2 72 0 3 1345 1203 107 0 0 chr9 99691041 99691219 -24384953 + (GGA)n Simple_repeat Simple_repeat 3 180 0 3 1345 396 0 0 0 chr9 99691669 99691713 -24384459 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1345 405 0 0 0 chr9 99691713 99691757 -24384415 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1345 428 278 130 34 chr9 99691760 99691998 -24384174 - B4 SINE B4 -24 268 8 3 1345 279 227 0 15 chr9 99693455 99693522 -24382650 - L1MA5 LINE L1 -23 6277 6212 3 1345 667 174 30 8 chr9 99693602 99693735 -24382437 - B1_Mur2 SINE Alu -2 147 12 3 1345 263 211 42 14 chr9 99694052 99694124 -24382048 + MIRc SINE MIR 76 149 -119 3 1345 340 333 79 20 chr9 99695051 99695253 -24380919 + MamGyp-int LTR Gypsy 3255 3468 -1594 3 1345 601 218 63 0 chr9 99695448 99695590 -24380582 + RSINE1 SINE B4 5 155 -10 3 1345 1090 52 7 0 chr9 99695728 99695863 -24380309 - B1_Mus1 SINE Alu -11 137 2 3 1345 615 260 140 99 chr9 99695889 99696231 -24379941 - MLT1A0 LTR MaLR 0 365 10 3 1345 402 135 38 19 chr9 99696543 99696649 -24379523 + GA-rich Low_complexity Low_complexity 3 110 0 3 1345 348 24 0 0 chr9 99697476 99697517 -24378655 + (TCC)n Simple_repeat Simple_repeat 2 42 0 3 1345 241 287 149 0 chr9 99698837 99698931 -24377241 + MLT1H1 LTR MaLR 27 134 -421 3 1345 401 389 78 30 chr9 99698994 99699262 -24376910 + MLT1H1 LTR MaLR 262 542 -13 3 1345 189 107 0 0 chr9 99699511 99699539 -24376633 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1345 512 297 100 37 chr9 99701117 99701386 -24374786 - L1MB5 LINE L1 -109 6065 5780 3 1345 306 0 0 0 chr9 99701841 99701875 -24374297 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 1345 240 130 0 0 chr9 99701931 99701977 -24374195 + (G)n Simple_repeat Simple_repeat 1 46 0 3 1345 198 283 17 0 chr9 99702729 99702789 -24373383 + L2c LINE L2 3268 3328 -59 3 1345 309 289 87 31 chr9 99702786 99702947 -24373225 - L3 LINE CR1 -1913 2576 2407 3 1345 201 39 0 0 chr9 99703431 99703457 -24372715 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1345 204 361 81 12 chr9 99704423 99704583 -24371589 - L2c LINE L2 -272 3115 2945 3 1345 351 44 0 0 chr9 99705387 99705432 -24370740 + (TATG)n Simple_repeat Simple_repeat 1 45 0 3 1345 2931 158 207 17 chr9 99705523 99706121 -24370051 - RMER1B Other Other -2 1064 353 3 1345 335 287 9 0 chr9 99706200 99706308 -24369864 + GA-rich Low_complexity Low_complexity 2 110 0 3 1345 533 240 0 37 chr9 99706684 99706818 -24369354 + RSINE1 SINE B4 5 133 -32 3 1345 664 69 43 0 chr9 99706822 99706938 -24369234 + (CA)n Simple_repeat Simple_repeat 1 121 0 3 1345 408 115 48 24 chr9 99706983 99707108 -24369064 + (CA)n Simple_repeat Simple_repeat 1 128 0 3 1345 226 241 91 11 chr9 99707197 99707285 -24368887 + L1ME4a LINE L1 5936 6030 -94 4 1345 205 167 28 0 chr9 99709043 99709079 -24367093 + G-rich Low_complexity Low_complexity 2 38 0 4 1345 504 281 7 14 chr9 99709339 99709480 -24366692 + B1F2 SINE Alu 2 141 -8 4 1345 211 128 0 25 chr9 99709492 99709532 -24366640 + A-rich Low_complexity Low_complexity 2 40 0 4 1345 234 143 0 0 chr9 99710174 99710223 -24365949 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1345 244 288 52 40 chr9 99710463 99710637 -24365535 + L1MEc LINE L1 1081 1256 -5144 4 1345 482 275 140 35 chr9 99710704 99710904 -24365268 + B4A SINE B4 7 227 -65 4 1345 327 371 0 0 chr9 99711095 99711273 -24364899 + (CA)n Simple_repeat Simple_repeat 2 179 0 4 1345 252 302 0 0 chr9 99711287 99711373 -24364799 + (CATA)n Simple_repeat Simple_repeat 3 88 0 4 1345 206 280 0 0 chr9 99711510 99711560 -24364612 + MIRc SINE MIR 104 153 -115 4 1345 325 338 46 14 chr9 99711564 99711780 -24364392 + L1MC4a LINE L1 5684 5906 -1976 4 1345 456 132 0 0 chr9 99711793 99711876 -24364296 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1345 459 322 25 80 chr9 99712743 99713057 -24363115 - MLT1B LTR MaLR -69 321 25 4 1345 590 246 159 16 chr9 99713417 99713599 -24362573 - B3 SINE B2 -5 211 4 4 1345 531 31 0 0 chr9 99714746 99714811 -24361361 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1345 663 304 115 67 chr9 99716378 99716840 -24359332 + MLT1H LTR MaLR 47 530 -19 4 1345 745 190 0 11 chr9 99716958 99717045 -24359127 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 1345 1802 217 55 5 chr9 99717045 99717443 -24358729 - MTD LTR MaLR -1 418 1 4 1345 745 190 0 11 chr9 99717443 99717536 -24358636 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 1345 258 246 0 28 chr9 99717550 99717621 -24358551 + (CATA)n Simple_repeat Simple_repeat 2 70 0 4 1345 234 303 15 0 chr9 99717633 99717699 -24358473 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 4 1345 235 203 13 13 chr9 99717699 99717774 -24358398 + GA-rich Low_complexity Low_complexity 2 76 0 4 1345 302 346 9 0 chr9 99718533 99718640 -24357532 - PB1D10 SINE Alu -8 109 2 4 1345 234 0 0 0 chr9 99718891 99718917 -24357255 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 1345 285 29 0 0 chr9 99718917 99718950 -24357222 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1345 222 233 0 0 chr9 99718952 99718995 -24357177 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1345 629 257 67 10 chr9 99719815 99720023 -24356149 + Lx8 LINE L1 7246 7465 -8 4 1345 977 65 26 0 chr9 99721183 99721336 -24354836 - L1_Mus3 LINE L1 0 6638 6482 4 1345 414 0 0 0 chr9 99721338 99721384 -24354788 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 4 1345 300 53 0 0 chr9 99721384 99721422 -24354750 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1345 240 175 0 0 chr9 99721523 99721586 -24354586 + T-rich Low_complexity Low_complexity 1 63 0 4 1345 1192 68 0 0 chr9 99721590 99721737 -24354435 - B1_Mus2 SINE Alu 0 147 1 4 1345 259 326 54 0 chr9 99722504 99722596 -24353576 - MIRc SINE MIR -150 118 22 4 1345 276 286 61 10 chr9 99723420 99723519 -24352653 - L1M5 LINE L1 -444 5680 5577 4 1345 1260 40 11 22 chr9 99723593 99723773 -24352399 + (CCAA)n Simple_repeat Simple_repeat 2 179 0 4 1345 345 47 0 0 chr9 99723950 99723993 -24352179 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1345 475 326 98 63 chr9 99724017 99724556 -24351616 - L1MC LINE L1 -1380 4763 4194 4 1345 533 378 52 16 chr9 99724705 99725071 -24351101 - L1M5 LINE L1 -2145 4001 3623 4 1345 528 59 0 0 chr9 99725154 99725222 -24350950 + (ATGTG)n Simple_repeat Simple_repeat 5 72 0 4 1345 630 112 14 27 chr9 99725244 99725391 -24350781 + (CAGAGA)n Simple_repeat Simple_repeat 2 146 0 4 1345 248 332 78 101 chr9 99725933 99726151 -24350021 - Charlie7 DNA MER1_type -2261 351 139 4 1345 676 287 61 28 chr9 99726209 99726445 -24349727 - B4 SINE B4 0 292 41 4 1345 1384 207 166 6 chr9 99727065 99727396 -24348776 - ORR1C2 LTR MaLR 0 384 1 4 1345 367 309 167 0 chr9 99727408 99727570 -24348602 + MIRb SINE MIR 32 220 -48 4 1345 257 381 53 32 chr9 99727966 99728153 -24348019 - Charlie22a DNA MER1_type -293 198 8 4 1345 337 289 134 37 chr9 99728216 99728432 -24347740 - L1MB3 LINE L1 -2 6181 5945 4 1345 865 282 81 11 chr9 99728477 99728749 -24347423 - B4 SINE B4 -1 291 1 4 1345 945 331 22 40 chr9 99729236 99729639 -24346533 - Lx8 LINE L1 -11 7462 7067 4 1345 340 346 0 0 chr9 99729741 99729845 -24346327 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 1345 726 271 81 21 chr9 99729845 99730132 -24346040 - B4A SINE B4 -12 280 7 4 1345 1347 260 97 16 chr9 99730132 99730515 -24345657 - Lx8 LINE L1 -442 7031 6618 4 1345 4977 36 0 3 chr9 99730549 99731128 -24345044 - L1Md_F2 LINE L1 -8 6574 5998 4 1345 925 104 15 0 chr9 99731128 99731262 -24344910 - B1_Mur4 SINE Alu -14 136 1 4 1345 728 267 94 33 chr9 99731405 99731765 -24344407 + HAL1 LINE L1 2124 2505 -2 4 1345 21 0 0 0 chr9 99731879 99731900 -24344272 + AT_rich Low_complexity Low_complexity 1 21 0 4 1345 530 286 127 74 chr9 99732436 99732719 -24343453 - MLT1B LTR MaLR -14 376 79 4 1345 212 233 0 0 chr9 99732727 99732770 -24343402 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1345 950 166 101 10 chr9 99732887 99733094 -24343078 + URR1A DNA MER1_type 1 226 0 4 1345 1935 146 13 17 chr9 99733480 99733836 -24342336 - Lx2B LINE L1 -605 6404 6037 4 1345 3653 129 46 28 chr9 99733837 99734441 -24341731 + Lx2 LINE L1 6382 6996 -1 4 1345 307 318 27 18 chr9 99734605 99734717 -24341455 + HAL1 LINE L1 2262 2374 -133 4 1345 993 171 101 19 chr9 99734792 99735001 -24341171 - URR1A DNA MER1_type 0 226 1 4 1345 191 340 122 49 chr9 99735306 99735510 -24340662 - L2b LINE L2 -220 3155 2937 4 1345 299 362 18 2 chr9 99735603 99735712 -24340460 - PB1D10 SINE Alu -8 112 1 4 1345 468 77 0 0 chr9 99735833 99735898 -24340274 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 4 1345 279 54 0 0 chr9 99736719 99736756 -24339416 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 4 1345 27 0 0 0 chr9 99736998 99737025 -24339147 + AT_rich Low_complexity Low_complexity 1 27 0 4 1345 598 282 6 28 chr9 99737297 99737479 -24338693 - L1MA4 LINE L1 -415 5885 5708 4 1345 293 266 0 32 chr9 99737526 99737628 -24338544 - L1M5 LINE L1 -2211 5574 5478 4 1345 950 235 0 36 chr9 99737634 99737828 -24338344 - B3 SINE B2 -15 201 15 4 1345 1154 318 57 19 chr9 99737828 99738511 -24337661 - L1MA4 LINE L1 -423 5457 4749 4 1345 720 248 0 18 chr9 99738640 99738804 -24337368 + RSINE1 SINE B4 3 163 -2 4 1345 230 241 0 0 chr9 99739028 99739082 -24337090 + L1ME3 LINE L1 6040 6093 -69 4 1345 284 279 35 0 chr9 99739261 99739347 -24336825 - MIRb SINE MIR -1 267 179 4 1345 1564 249 42 89 chr9 99740378 99740881 -24335291 + RMER19C LTR ERVK 1 577 -34 4 1345 794 347 49 38 chr9 99740924 99741349 -24334823 - MLT1D LTR MaLR 0 505 76 4 1345 207 100 0 0 chr9 99742148 99742178 -24333994 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 4 1345 1202 81 17 0 chr9 99742464 99742638 -24333534 + (TTCTCC)n Simple_repeat Simple_repeat 2 178 0 4 1345 26 0 0 0 chr9 99742858 99742884 -24333288 + AT_rich Low_complexity Low_complexity 1 26 0 4 1345 435 242 76 35 chr9 99742978 99743149 -24333023 - Lx9 LINE L1 -2 7642 7465 4 1345 194 306 11 45 chr9 99743656 99743745 -24332427 + L2c LINE L2 3282 3367 -20 4 1345 2410 79 6 0 chr9 99744289 99744606 -24331566 + ORR1A2 LTR MaLR 1 319 -8 4 1345 189 236 107 40 chr9 99744710 99744785 -24331387 - MIRb SINE MIR -5 263 184 4 1345 215 236 18 0 chr9 99745007 99745062 -24331110 + GA-rich Low_complexity Low_complexity 5 60 0 4 1346 611 153 198 16 chr9 99746097 99746223 -24329949 + B1_Mur4 SINE Alu 2 150 0 4 1346 22 0 0 0 chr9 99747686 99747708 -24328464 + AT_rich Low_complexity Low_complexity 1 22 0 4 1346 275 122 0 20 chr9 99747831 99747881 -24328291 + (TAA)n Simple_repeat Simple_repeat 3 51 0 4 1346 383 126 63 40 chr9 99749482 99749656 -24326516 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 4 1346 207 150 48 48 chr9 99750819 99750882 -24325290 + A-rich Low_complexity Low_complexity 5 67 0 4 1346 321 26 0 0 chr9 99751193 99751231 -24324941 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 4 1346 312 275 49 12 chr9 99751246 99751327 -24324845 - RSINE1 SINE B4 -79 86 3 4 1346 458 125 0 12 chr9 99751427 99751508 -24324664 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1346 986 139 12 0 chr9 99751510 99751683 -24324489 + (TATG)n Simple_repeat Simple_repeat 2 176 0 4 1346 284 302 109 36 chr9 99752024 99752189 -24323983 - MER45B DNA Tip100 -123 917 741 4 1346 252 289 141 26 chr9 99752248 99752404 -24323768 - MER45B DNA Tip100 -401 639 466 4 1346 229 307 13 0 chr9 99752448 99752523 -24323649 - MER45B DNA Tip100 -657 383 308 4 1346 1187 44 0 0 chr9 99752593 99752730 -24323442 + B1_Mus1 SINE Alu 5 141 -7 4 1346 207 0 0 0 chr9 99752737 99752760 -24323412 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1346 492 318 91 78 chr9 99752793 99753257 -24322915 - L1M5 LINE L1 -743 5403 4934 4 1346 553 262 100 16 chr9 99753482 99753672 -24322500 + MIRb SINE MIR 35 240 -28 4 1346 303 28 0 0 chr9 99754795 99754831 -24321341 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 1346 331 235 0 14 chr9 99755253 99755322 -24320850 + ID4_ SINE ID 1 68 -15 4 1346 1023 177 0 0 chr9 99755376 99755870 -24320302 + GA-rich Low_complexity Low_complexity 1 494 0 4 1346 320 222 27 27 chr9 99755924 99755998 -24320174 + MER5A1 DNA MER1_type 44 117 -49 4 1346 243 178 114 76 chr9 99756032 99756111 -24320061 + MER53 DNA hAT 28 109 -84 5 1346 310 292 26 17 chr9 99756183 99756298 -24319874 - MER5A DNA MER1_type -26 163 48 5 1346 208 379 0 0 chr9 99756733 99756828 -24319344 + (TG)n Simple_repeat Simple_repeat 1 95 0 5 1346 523 286 80 44 chr9 99757857 99758106 -24318066 + Lx8 LINE L1 7071 7328 -145 5 1346 459 0 0 0 chr9 99758110 99758161 -24318011 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1346 364 318 9 0 chr9 99758189 99758299 -24317873 + (CA)n Simple_repeat Simple_repeat 2 112 0 5 1346 186 43 0 0 chr9 99758960 99758983 -24317189 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1346 1201 43 0 0 chr9 99758987 99759127 -24317045 - B1_Mus2 SINE Alu -7 140 1 5 1346 288 258 41 88 chr9 99759780 99759950 -24316222 - MIRb SINE MIR -27 241 80 5 1346 229 266 18 146 chr9 99759950 99760060 -24316112 - LTR53 LTR ERVL -308 211 116 5 1346 545 181 18 29 chr9 99760517 99760644 -24315528 + GA-rich Low_complexity Low_complexity 5 130 0 5 1346 1319 67 6 0 chr9 99760644 99760823 -24315349 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1346 545 181 18 29 chr9 99760823 99760866 -24315306 + polypurine Low_complexity Low_complexity 131 173 0 5 1346 201 200 37 28 chr9 99760853 99760961 -24315211 + GA-rich Low_complexity Low_complexity 4 112 0 5 1346 735 195 0 8 chr9 99761163 99761292 -24314880 + B1_Mur3 SINE Alu 1 128 -21 5 1346 206 300 42 14 chr9 99761425 99761496 -24314676 - MIR SINE MIR -90 172 100 5 1346 228 318 73 18 chr9 99761666 99761775 -24314397 + MIRc SINE MIR 7 121 -147 5 1346 1579 254 51 5 chr9 99761809 99762201 -24313971 - MTD LTR MaLR 0 419 10 5 1346 237 83 0 0 chr9 99762368 99762404 -24313768 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1346 814 48 0 0 chr9 99762404 99762507 -24313665 - B1_Mus2 SINE Alu -3 144 42 5 1346 358 269 20 45 chr9 99763104 99763231 -24312941 + MIRm SINE MIR 30 158 -118 5 1346 191 114 0 28 chr9 99763346 99763382 -24312790 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1346 315 337 45 28 chr9 99764660 99764820 -24311352 + MIRb SINE MIR 97 260 -2 5 1346 428 111 0 14 chr9 99765346 99765419 -24310753 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1346 366 115 0 0 chr9 99765983 99766044 -24310128 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1346 30 0 0 0 chr9 99766919 99766949 -24309223 + AT_rich Low_complexity Low_complexity 1 30 0 5 1346 24 0 0 0 chr9 99768875 99768899 -24307273 + AT_rich Low_complexity Low_complexity 1 24 0 5 1346 369 0 0 0 chr9 99771626 99771667 -24304505 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1346 180 0 0 0 chr9 99773964 99773984 -24302188 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1346 180 0 0 0 chr9 99774658 99774678 -24301494 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5 1346 185 111 0 0 chr9 99778039 99778066 -24298106 - MIRc SINE MIR -113 155 129 5 1346 215 244 13 0 chr9 99778226 99778304 -24297868 + CT-rich Low_complexity Low_complexity 1 79 0 5 1346 614 186 7 60 chr9 99780686 99780835 -24295337 - ORR1E LTR MaLR -213 146 6 5 1346 389 228 84 42 chr9 99781031 99781173 -24294999 - L2a LINE L2 0 3426 3279 5 1346 891 152 0 0 chr9 99781187 99781547 -24294625 + (TG)n Simple_repeat Simple_repeat 1 360 0 5 1346 917 174 117 19 chr9 99781675 99781880 -24294292 - URR1A DNA MER1_type -1 225 1 5 1346 249 33 0 0 chr9 99783250 99783280 -24292892 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5 1346 1672 21 0 5 chr9 99783435 99783628 -24292544 - B2_Mm1a SINE B2 -1 192 1 5 1346 386 305 118 46 chr9 99783710 99783947 -24292225 - MLT1F1 LTR MaLR 0 569 316 5 1346 515 246 0 17 chr9 99784493 99784613 -24291559 - MLT1A0 LTR MaLR 0 365 248 5 1346 581 260 43 31 chr9 99784698 99784924 -24291248 - Tigger7 DNA MER2_type -1 2490 2267 5 1346 364 229 43 52 chr9 99784942 99785057 -24291115 + PB1D9 SINE Alu 2 115 -5 5 1346 477 219 0 0 chr9 99785057 99785176 -24290996 + GA-rich Low_complexity Low_complexity 1 119 0 5 1346 233 314 133 0 chr9 99785182 99785287 -24290885 - Tigger7 DNA MER2_type -2238 253 135 5 1346 339 242 22 0 chr9 99785546 99785637 -24290535 - B4A SINE B4 -198 94 2 5 1346 195 129 0 0 chr9 99786981 99787012 -24289160 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1346 2270 158 38 5 chr9 99787324 99787724 -24288448 - MTC LTR MaLR -8 413 1 5 1346 289 361 90 34 chr9 99787777 99788132 -24288040 + MLT1L LTR MaLR 181 555 -55 5 1346 307 179 43 36 chr9 99789319 99789458 -24286714 + (TTATA)n Simple_repeat Simple_repeat 3 142 0 5 1346 3501 203 72 8 chr9 99789458 99790192 -24285980 - Lx6 LINE L1 -332 7128 6348 5 1346 2476 189 61 24 chr9 99790191 99790815 -24285357 + Lx7 LINE L1 5701 6356 -1340 5 1346 334 339 28 55 chr9 99791554 99791786 -24284386 + LTR16E2 LTR ERVL 320 532 -6 5 1346 203 241 0 36 chr9 99791802 99791858 -24284314 + CT-rich Low_complexity Low_complexity 2 55 0 5 1346 218 56 28 0 chr9 99792144 99792180 -24283992 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1346 254 234 31 0 chr9 99792871 99792935 -24283237 + MIR SINE MIR 91 156 -106 5 1346 333 351 112 58 chr9 99793274 99793552 -24282620 + MLT1G3 LTR MaLR 4 296 -299 5 1346 36 62 0 0 chr9 99795089 99795153 -24281019 + AT_rich Low_complexity Low_complexity 1 64 0 5 1346 31979 94 8 4 chr9 99795286 99799198 -24276974 - L1_Mus1 LINE L1 0 6567 2637 5 1346 3225 104 32 44 chr9 99799198 99799721 -24276451 - L1_Mus1 LINE L1 -1 6566 6050 5 1346 31979 83 6 3 chr9 99799721 99802106 -24274066 - L1_Mus1 LINE L1 -3247 2636 245 5 1346 225 0 0 0 chr9 99802204 99802229 -24273943 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1346 309 198 0 0 chr9 99803323 99803404 -24272768 + T-rich Low_complexity Low_complexity 1 81 0 5 1346 1072 76 25 0 chr9 99803415 99803573 -24272599 - L1_Mus3 LINE L1 -1 6637 6476 5 1346 218 176 20 0 chr9 99803624 99803675 -24272497 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1346 25 31 0 0 chr9 99803753 99803785 -24272387 + AT_rich Low_complexity Low_complexity 1 32 0 5 1346 569 216 100 58 chr9 99804098 99804280 -24271892 + L1MB8 LINE L1 5841 6035 -1750 5 1346 715 278 123 38 chr9 99804483 99804719 -24271453 + ORR1D2 LTR MaLR 3 258 -112 5 1346 2652 86 0 55 chr9 99804719 99805099 -24271073 + RLTR10D LTR ERVK 1 359 0 5 1346 6075 50 8 0 chr9 99805099 99805832 -24270340 + IAP-d-int LTR ERVK 1 739 -5803 5 1346 27705 42 25 7 chr9 99805899 99809197 -24266975 + IAP-d-int LTR ERVK 3188 6542 0 5 1346 2722 72 0 55 chr9 99809197 99809577 -24266595 + RLTR10D LTR ERVK 1 359 0 5 1346 348 243 42 59 chr9 99809578 99809621 -24266551 + ORR1D2 LTR MaLR 255 296 -74 5 1346 3169 76 2 2 chr9 99809621 99810028 -24266144 + MTB_Mm LTR MaLR 1 407 0 5 1346 348 243 42 59 chr9 99810028 99810102 -24266070 + ORR1D2 LTR MaLR 297 370 0 5 1346 2809 145 164 54 chr9 99810458 99810765 -24265407 + RMER6A LTR ERVK 14 320 -436 5 1346 528 16 0 0 chr9 99810765 99810826 -24265346 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1346 2809 145 164 54 chr9 99810826 99811183 -24264989 + RMER6A LTR ERVK 321 750 -6 5 1346 478 203 8 8 chr9 99811953 99812082 -24264090 + GA-rich Low_complexity Low_complexity 1 129 0 5 1346 193 309 24 47 chr9 99812664 99812749 -24263423 + MIRb SINE MIR 100 182 -86 5 1346 470 327 19 61 chr9 99813021 99813233 -24262939 + B3 SINE B2 1 203 -13 5 1346 214 200 0 0 chr9 99813233 99813273 -24262899 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1346 236 315 0 42 chr9 99813426 99813522 -24262650 + Charlie5 DNA MER1_type 7 98 -2526 5 1346 375 229 30 40 chr9 99814611 99814711 -24261461 - RSINE1 SINE B4 -39 126 28 5 1346 1360 113 113 35 chr9 99814715 99814972 -24261200 + ORR1A2 LTR MaLR 51 327 0 5 1346 8410 128 63 154 chr9 99814972 99817154 -24259018 + ORR1A2-int LTR MaLR 1 1963 0 5 1346 202 132 26 0 chr9 99817658 99817696 -24258476 + A-rich Low_complexity Low_complexity 4 42 0 5 1346 300 272 92 101 chr9 99817735 99818083 -24258089 + HAL1 LINE L1 781 1125 -1382 5 1346 383 304 13 39 chr9 99818587 99818741 -24257431 + B4A SINE B4 2 151 -141 5 1346 360 282 59 82 chr9 99818783 99818918 -24257254 + B4A SINE B4 149 280 -12 5 1346 387 0 0 0 chr9 99818962 99819005 -24257167 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1346 183 42 0 0 chr9 99819021 99819045 -24257127 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 1346 33539 72 1 1 chr9 99819495 99824541 -24251631 + L1Md_F LINE L1 542 5586 -297 5 1346 8089 41 19 1 chr9 99824541 99825518 -24250654 + L1Md_F2 LINE L1 5587 6581 -1 5 1346 635 237 103 0 chr9 99825794 99825950 -24250222 - B3A SINE B2 -26 172 1 5 1346 433 225 48 105 chr9 99826523 99826647 -24249525 - B1F1 SINE Alu -29 120 1 5 1346 301 287 288 21 chr9 99827030 99827221 -24248951 - B4 SINE B4 -39 253 12 5 1346 455 259 109 46 chr9 99827403 99827686 -24248486 + Tigger13a DNA MER2_type 162 462 -309 5 1346 1241 252 128 22 chr9 99828178 99828583 -24247589 - Lx8 LINE L1 -2 7471 7024 5 1346 261 289 0 12 chr9 99828705 99828789 -24247383 + ID4_ SINE ID 1 83 0 5 1346 795 195 6 42 chr9 99830231 99830397 -24245775 + RSINE1 SINE B4 4 163 -2 5 1346 355 298 84 14 chr9 99830610 99830753 -24245419 - RCHARR1 DNA MER1_type -699 275 123 5 1346 24 32 0 0 chr9 99830753 99830784 -24245388 + AT_rich Low_complexity Low_complexity 1 31 0 5 1346 456 213 198 74 chr9 99830795 99830957 -24245215 - B3A SINE B2 -16 182 1 5 1346 227 200 0 0 chr9 99830961 99831006 -24245166 - RCHARR1 DNA MER1_type -856 118 74 5 1346 2144 101 3 9 chr9 99831297 99831618 -24244554 + ORR1A2 LTR MaLR 1 319 -8 5 1346 219 323 80 10 chr9 99831638 99831738 -24244434 + L2c LINE L2 3055 3161 -226 5 1346 657 106 122 0 chr9 99832199 99832322 -24243850 + B1_Mus1 SINE Alu 3 140 -8 5 1346 25 31 0 0 chr9 99832390 99832422 -24243750 + AT_rich Low_complexity Low_complexity 1 32 0 5 1346 274 294 108 66 chr9 99832501 99832779 -24243393 - ORR1E LTR MaLR -15 344 53 5 1346 232 214 89 0 chr9 99832794 99832850 -24243322 - ORR1E LTR MaLR -255 104 44 5 1346 444 330 112 31 chr9 99833393 99833550 -24242622 + L1MEf LINE L1 1341 1613 -5127 5 1346 2510 130 65 5 chr9 99833550 99833922 -24242250 + ORR1B1 LTR MaLR 1 394 0 5 1346 444 328 116 31 chr9 99833922 99834087 -24242085 + L1MEf LINE L1 1614 1797 -4943 5 1346 21 0 0 0 chr9 99834093 99834114 -24242058 + AT_rich Low_complexity Low_complexity 1 21 0 5 1346 40270 30 1 7 chr9 99834116 99840314 -24235858 - L1Md_T LINE L1 -1 6581 422 6 1346 726 300 117 8 chr9 99840338 99840724 -24235448 + L1MEf LINE L1 1779 2206 -4534 5 1346 184 186 0 33 chr9 99840733 99840794 -24235378 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1346 502 313 57 117 chr9 99841055 99841424 -24234748 - ORR1E LTR MaLR -5 354 8 6 1346 1989 320 37 17 chr9 99841430 99842467 -24233705 + L1M2 LINE L1 2608 3664 -2479 6 1346 1130 205 86 33 chr9 99842599 99842895 -24233277 + L1_Mur2 LINE L1 859 1131 -6597 6 1346 1998 92 14 7 chr9 99842895 99843181 -24232991 - L1_Mus4 LINE L1 -2 6634 6347 6 1346 4149 174 40 22 chr9 99843181 99844129 -24232043 + L1_Mur2 LINE L1 1058 2038 -3842 6 1346 1408 183 151 7 chr9 99844660 99844951 -24231221 + RMER1B Other Other 44 376 -690 6 1346 2648 130 15 2 chr9 99844948 99845358 -24230814 - L1_Mur1 LINE L1 -693 5193 4779 6 1346 7752 120 28 7 chr9 99845353 99846633 -24229539 - L1_Mur1 LINE L1 -2292 3594 2288 6 1346 1243 136 363 7 chr9 99848056 99848364 -24227808 - L1_Mur1 LINE L1 -3589 2297 1880 6 1346 2476 151 39 78 chr9 99848359 99848972 -24227200 + L1_Mur2 LINE L1 2622 3210 -2670 6 1346 653 304 86 4 chr9 99848993 99849260 -24226912 + L1M2 LINE L1 5321 5609 -691 6 1346 351 0 0 0 chr9 99849619 99849658 -24226514 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1346 1390 292 53 49 chr9 99849706 99850455 -24225717 - L1M2 LINE L1 -839 5304 4553 6 1346 462 322 86 57 chr9 99850674 99851164 -24225008 - L1MEd LINE L1 -5015 1104 601 6 1346 1283 102 28 0 chr9 99851909 99852085 -24224087 - B2_Mm2 SINE B2 -14 181 1 6 1346 293 292 38 15 chr9 99852104 99852236 -24223936 - L1MA7 LINE L1 -1 6290 6156 6 1346 680 197 26 0 chr9 99852713 99852830 -24223342 + B1_Mur2 SINE Alu 2 121 -28 6 1346 297 0 0 0 chr9 99853793 99853826 -24222346 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1346 286 243 164 156 chr9 99853835 99853957 -24222215 - RSINE1 SINE B4 -41 124 2 6 1346 191 200 57 71 chr9 99854049 99854119 -24222053 + MIRc SINE MIR 80 148 -120 6 1346 204 40 0 0 chr9 99854583 99854608 -24221564 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 1346 550 299 86 39 chr9 99855649 99855928 -24220244 - MER102a DNA MER1_type -29 301 10 6 1346 225 300 68 36 chr9 99856399 99856555 -24219617 - MIRb SINE MIR -99 163 2 6 1346 523 256 120 92 chr9 99857554 99857804 -24218368 - MIR SINE MIR 0 262 6 6 1346 4383 35 0 0 chr9 99858534 99859018 -24217154 + L1Md_T LINE L1 6099 6582 0 6 1346 3122 164 29 38 chr9 99859855 99860411 -24215761 - Lx2B LINE L1 0 7000 6450 6 1346 496 328 28 63 chr9 99860552 99860729 -24215443 - MER99 DNA hAT? -260 571 407 6 1346 1017 250 0 0 chr9 99860729 99860929 -24215243 + B3 SINE B2 2 201 -15 6 1346 417 39 0 0 chr9 99860929 99860980 -24215192 + (TAAG)n Simple_repeat Simple_repeat 1 51 0 6 1346 496 328 28 63 chr9 99860980 99861087 -24215085 - MER99 DNA hAT? -425 406 297 6 1346 852 296 103 28 chr9 99861206 99861794 -24214378 + L1_Rod LINE L1 4902 5520 -357 6 1346 180 0 0 0 chr9 99862371 99862391 -24213781 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1346 201 74 0 0 chr9 99864166 99864193 -24211979 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 6 1346 403 315 9 0 chr9 99864330 99864438 -24211734 + MER45A DNA Tip100 70 178 0 6 1346 234 0 0 0 chr9 99864609 99864635 -24211537 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1346 208 398 110 0 chr9 99865097 99865215 -24210957 + MIRb SINE MIR 15 145 -123 6 1346 2055 155 71 3 chr9 99865361 99865697 -24210475 - ORR1B2 LTR MaLR -8 359 1 6 1346 1225 34 0 52 chr9 99865732 99865887 -24210285 + B1_Mm SINE Alu 1 147 0 6 1346 693 242 84 18 chr9 99866256 99866529 -24209643 - L1MA9 LINE L1 -229 6083 5793 6 1346 297 0 0 0 chr9 99866542 99866575 -24209597 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1346 606 100 0 0 chr9 99866583 99866663 -24209509 - B2_Mm2 SINE B2 -115 80 1 6 1346 813 251 112 29 chr9 99866736 99867054 -24209118 - RMER15 LTR ERVL -43 532 69 6 1346 306 168 391 27 chr9 99867285 99867395 -24208777 + B1_Mur4 SINE Alu 1 150 0 6 1346 684 307 86 43 chr9 99867455 99867734 -24208438 + B4 SINE B4 2 292 0 6 1346 696 132 0 0 chr9 99867741 99867870 -24208302 + (CA)n Simple_repeat Simple_repeat 2 130 0 6 1346 290 235 0 0 chr9 99868004 99868085 -24208087 + T-rich Low_complexity Low_complexity 1 81 0 6 1346 22 35 0 0 chr9 99868572 99868601 -24207571 + AT_rich Low_complexity Low_complexity 1 29 0 6 1346 1373 259 0 93 chr9 99868612 99869000 -24207172 + ORR1E LTR MaLR 8 359 0 6 1346 339 25 0 0 chr9 99869049 99869089 -24207083 + (TTAA)n Simple_repeat Simple_repeat 2 41 0 6 1346 315 0 0 0 chr9 99869455 99869490 -24206682 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1346 292 333 65 0 chr9 99869559 99869727 -24206445 - MIR SINE MIR -6 256 78 6 1346 244 282 58 23 chr9 99869959 99870046 -24206126 + MTEb LTR MaLR 290 379 0 6 1346 4516 224 47 23 chr9 99870283 99871445 -24204727 - L1_Mur3 LINE L1 -1046 4834 3646 6 1346 3966 281 80 19 chr9 99871528 99871640 -24204532 + Lx8 LINE L1 6066 6185 -1288 6 1346 183 80 0 0 chr9 99871640 99871665 -24204507 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1346 3966 281 80 19 chr9 99871665 99872879 -24203293 + Lx8 LINE L1 6186 7472 -1 6 1346 23 54 0 0 chr9 99872943 99872980 -24203192 + AT_rich Low_complexity Low_complexity 1 37 0 6 1346 1001 232 24 19 chr9 99873807 99874018 -24202154 - B3 SINE B2 -4 212 1 6 1346 366 240 20 0 chr9 99874977 99875127 -24201045 + GA-rich Low_complexity Low_complexity 2 154 0 6 1346 261 0 0 0 chr9 99875204 99875233 -24200939 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1346 298 322 73 24 chr9 99875963 99876087 -24200085 - MLT1N2 LTR MaLR -2 560 431 6 1346 185 86 57 0 chr9 99876485 99876520 -24199652 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 6 1346 285 98 0 0 chr9 99876540 99876581 -24199591 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 6 1346 255 61 0 0 chr9 99876581 99876613 -24199559 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1346 690 231 7 20 chr9 99876629 99876775 -24199397 - RSINE1 SINE B4 -19 146 3 6 168 308 372 42 21 chr9 99876775 99876967 -24199205 + L1M5 LINE L1 5025 5220 -926 6 1347 549 309 72 29 chr9 99877045 99877352 -24198820 + L1M5 LINE L1 5321 5640 -522 6 1347 1201 135 129 5 chr9 99877468 99877669 -24198503 - URR1A DNA MER1_type 0 226 1 6 1347 453 324 61 6 chr9 99878766 99878946 -24197226 - MLT1N2-int LTR MaLR -184 1225 1036 6 1347 1286 279 155 16 chr9 99879010 99879595 -24196577 - Lx8 LINE L1 -44 7429 6797 6 1347 256 122 24 0 chr9 99879739 99879780 -24196392 - L1MA6 LINE L1 -364 5936 5895 6 1347 280 250 87 14 chr9 99879778 99879916 -24196256 - L1_Rod LINE L1 -59 5788 5641 6 1347 1651 310 81 65 chr9 99880469 99880897 -24195275 - L1_Mur3 LINE L1 -87 5793 5388 6 1347 1337 34 0 0 chr9 99880897 99881045 -24195127 - B1_Mus1 SINE Alu 0 148 1 6 1347 1651 310 81 65 chr9 99881045 99881714 -24194458 - L1_Mur3 LINE L1 -493 5387 4678 6 1347 456 19 0 0 chr9 99881718 99881771 -24194401 + (TTA)n Simple_repeat Simple_repeat 3 55 0 6 1347 556 274 71 44 chr9 99881844 99882096 -24194076 + Lx8 LINE L1 6878 7136 -337 6 1347 215 186 23 0 chr9 99882807 99882850 -24193322 + CT-rich Low_complexity Low_complexity 1 44 0 6 1347 196 411 61 30 chr9 99883553 99883751 -24192421 + MIRb SINE MIR 51 254 -14 6 1347 207 346 10 19 chr9 99885738 99885841 -24190331 + GA-rich Low_complexity Low_complexity 4 105 0 6 1347 189 147 0 0 chr9 99886674 99886708 -24189464 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 6 1347 180 371 57 0 chr9 99886752 99886822 -24189350 - L2c LINE L2 -69 3318 3245 6 1347 599 0 14 0 chr9 99887634 99887705 -24188467 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1347 1747 227 119 50 chr9 99888683 99889328 -24186844 - RMER6C LTR ERVK 0 690 1 6 1347 680 164 14 0 chr9 99889635 99889781 -24186391 + (TCTCTG)n Simple_repeat Simple_repeat 1 148 0 6 1347 482 238 90 0 chr9 99889858 99889980 -24186192 + B3A SINE B2 84 216 0 6 1347 360 0 0 0 chr9 99890996 99891036 -24185136 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1347 207 204 0 0 chr9 99891037 99891086 -24185086 + G-rich Low_complexity Low_complexity 2 50 0 6 1347 787 240 23 56 chr9 99891344 99891560 -24184612 - B3 SINE B2 -5 211 3 6 1347 239 305 0 0 chr9 99891792 99891851 -24184321 + Charlie12 DNA MER1_type 7 65 -2808 6 1347 464 295 102 45 chr9 99891975 99892220 -24183952 + ORR1E LTR MaLR 87 345 -14 6 1347 1135 84 21 43 chr9 99892809 99892995 -24183177 + L1_Mus3 LINE L1 6457 6638 0 6 1347 269 26 26 0 chr9 99893955 99893993 -24182179 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1347 1155 68 7 0 chr9 99894168 99894314 -24181858 + B1_Mus1 SINE Alu 1 147 -1 6 1347 23 0 0 0 chr9 99896134 99896157 -24180015 + AT_rich Low_complexity Low_complexity 1 23 0 6 1347 625 275 122 0 chr9 99896332 99896561 -24179611 - Tigger7 DNA MER2_type -9 2482 2226 6 1347 459 260 56 49 chr9 99896539 99896701 -24179471 - Tigger7 DNA MER2_type -2019 472 310 6 1347 305 275 0 14 chr9 99896716 99896786 -24179386 + B4 SINE B4 2 70 -222 6 1347 288 53 0 0 chr9 99896895 99896933 -24179239 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1347 619 146 7 7 chr9 99897049 99897194 -24178978 + (CA)n Simple_repeat Simple_repeat 2 146 0 6 1347 593 285 202 0 chr9 99897198 99897440 -24178732 - Tigger7 DNA MER2_type -2171 320 30 6 1347 383 305 43 55 chr9 99897557 99897720 -24178452 - MER5A DNA MER1_type -1 188 28 6 1347 702 285 130 58 chr9 99897833 99898347 -24177825 + Lx9 LINE L1 7093 7643 -1 6 1347 275 250 23 91 chr9 99898387 99898475 -24177697 + ID4_ SINE ID 2 83 0 6 1347 272 233 0 0 chr9 99898766 99898826 -24177346 + PB1D10 SINE Alu 52 111 -6 6 1347 1080 45 0 0 chr9 99898920 99899054 -24177118 + (TTTC)n Simple_repeat Simple_repeat 1 134 0 6 1347 213 196 15 164 chr9 99900198 99900265 -24175907 + ID2 SINE ID 17 73 -10 6 1347 516 282 92 76 chr9 99900248 99900432 -24175740 + B4A SINE B4 106 292 0 6 1347 369 0 0 0 chr9 99900453 99900494 -24175678 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1347 387 0 0 0 chr9 99900494 99900536 -24175636 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1347 480 35 0 0 chr9 99900744 99900802 -24175370 + (TTA)n Simple_repeat Simple_repeat 3 60 0 7 1347 453 254 181 21 chr9 99900939 99901132 -24175040 - RLTR42-int LTR ERVK -3727 1795 1572 7 1347 271 158 18 0 chr9 99901162 99901219 -24174953 - RLTR42-int LTR ERVK -5159 978 921 7 1347 311 209 61 71 chr9 99902083 99902181 -24173991 - RMER10A LTR ERVL -345 97 1 7 1347 710 284 80 19 chr9 99902627 99902889 -24173283 - MLT2B4 LTR ERVL -46 510 233 7 1347 640 317 116 39 chr9 99902907 99903242 -24172930 - MLT1A LTR MaLR -13 361 1 7 1347 1526 183 79 6 chr9 99903417 99903747 -24172425 + Lx5 LINE L1 6694 7047 -3 7 1347 416 333 9 0 chr9 99903755 99903866 -24172306 - RSINE1 SINE B4 -47 118 7 7 1347 31 68 0 0 chr9 99903866 99903925 -24172247 + AT_rich Low_complexity Low_complexity 1 59 0 7 1347 361 341 137 12 chr9 99904071 99904392 -24171780 + L1M5 LINE L1 4085 4445 -1701 7 1347 399 356 93 38 chr9 99904895 99905184 -24170988 + L1M5 LINE L1 4432 4736 -1410 7 1347 241 296 117 62 chr9 99905334 99905496 -24170676 + MLT1C LTR MaLR 15 185 -442 7 1347 712 330 14 21 chr9 99905556 99905838 -24170334 + MLT1A0 LTR MaLR 2 281 -84 7 1347 1325 284 51 28 chr9 99905970 99906578 -24169594 - L1_Rod LINE L1 -5 5842 5221 7 1347 366 336 76 28 chr9 99906721 99906865 -24169307 - B4A SINE B4 -86 206 56 7 1347 601 319 54 72 chr9 99907152 99907486 -24168686 + MT2A LTR ERVL 201 528 -5 7 1347 484 304 181 92 chr9 99907649 99907818 -24168354 - MLT1A1 LTR MaLR -4 404 215 7 1347 360 0 0 0 chr9 99907818 99907858 -24168314 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1347 484 304 181 92 chr9 99907858 99908058 -24168114 - MLT1A1 LTR MaLR -194 214 2 7 1347 183 239 0 0 chr9 99909234 99909280 -24166892 + G-rich Low_complexity Low_complexity 1 46 0 7 1347 482 326 112 9 chr9 99909298 99909521 -24166651 + MLT1C LTR MaLR 219 464 -3 7 1347 1436 212 107 33 chr9 99909543 99909568 -24166604 + MTE2b LTR MaLR 16 35 -344 7 1347 1012 139 209 0 chr9 99909568 99909755 -24166417 + URR1A DNA MER1_type 1 226 0 7 1347 1436 212 107 33 chr9 99909755 99910066 -24166106 + MTE2b LTR MaLR 36 377 -2 7 1347 685 279 87 64 chr9 99910575 99910920 -24165252 + MLT1A0 LTR MaLR 1 353 -12 7 1347 251 252 138 68 chr9 99911013 99911133 -24165039 + MLT1A0 LTR MaLR 277 459 -8 7 1347 302 331 49 31 chr9 99912309 99912471 -24163701 + L1M5 LINE L1 5492 5656 -468 7 1347 270 0 0 0 chr9 99912793 99912823 -24163349 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 1347 364 283 39 29 chr9 99913279 99913381 -24162791 + U6 snRNA snRNA 1 103 -4 7 1347 872 304 48 24 chr9 99913519 99913888 -24162284 - MTEa LTR MaLR 0 379 8 7 1347 2399 291 58 11 chr9 99913883 99914519 -24161653 - MTEa-int LTR MaLR -18 1562 897 7 1347 2747 278 54 131 chr9 99914793 99915270 -24160902 - L1_Mur3 LINE L1 -50 5830 5318 7 1347 989 144 0 0 chr9 99915270 99915416 -24160756 - B1_Mus2 SINE Alu 0 147 2 7 1347 2747 278 54 131 chr9 99915416 99916025 -24160147 - L1_Mur3 LINE L1 -563 5317 4685 7 1347 186 43 0 0 chr9 99916025 99916048 -24160124 + (ATG)n Simple_repeat Simple_repeat 2 24 0 7 1347 2747 278 54 131 chr9 99916048 99917461 -24158711 - L1_Mur3 LINE L1 -1196 4684 3522 7 1347 345 100 0 0 chr9 99918077 99918127 -24158045 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 7 1347 489 34 0 0 chr9 99918735 99918794 -24157378 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1347 255 79 0 0 chr9 99919375 99919413 -24156759 + (GGA)n Simple_repeat Simple_repeat 3 40 0 7 1347 1046 69 7 0 chr9 99919425 99919569 -24156603 + (GAA)n Simple_repeat Simple_repeat 3 147 0 7 1347 1374 188 111 43 chr9 99919583 99919933 -24156239 + ORR1D1 LTR MaLR 1 374 0 7 1347 401 345 134 45 chr9 99921018 99921309 -24154863 + L1M5 LINE L1 5443 5759 -365 7 1347 215 116 47 0 chr9 99922241 99922284 -24153888 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 7 1347 261 298 50 0 chr9 99922293 99922454 -24153718 - L1M2 LINE L1 -1300 4843 4675 7 1347 992 282 67 0 chr9 99922452 99922813 -24153359 + L1M2 LINE L1 5364 5748 -552 7 1347 1205 259 49 38 chr9 99922894 99923260 -24152912 - ORR1D2 LTR MaLR 0 370 1 7 1347 207 69 0 0 chr9 99923339 99923368 -24152804 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1347 217 75 24 24 chr9 99926596 99926637 -24149535 + (GGGAGA)n Simple_repeat Simple_repeat 3 43 0 7 1347 1757 171 35 11 chr9 99928018 99928366 -24147806 - RLTR15 LTR ERVK 0 359 4 7 1347 483 354 54 49 chr9 99928450 99928875 -24147297 - L1MC4 LINE L1 -3 8039 7613 7 1347 373 317 104 73 chr9 99928955 99929491 -24146681 - L1ME1 LINE L1 -102 6077 5527 7 1347 307 312 16 23 chr9 99929714 99929842 -24146330 - L1ME1 LINE L1 -2576 5419 5293 7 1347 211 304 72 0 chr9 99930394 99930463 -24145709 + ID4_ SINE ID 6 79 -4 7 1347 301 294 13 15 chr9 99931293 99931393 -24144779 - MIR SINE MIR -162 106 8 7 1347 505 310 39 62 chr9 99932092 99932189 -24143983 + CYRA11_Mm Unknown Y-chromosome 75 164 -453 7 1347 1173 200 14 0 chr9 99932189 99932404 -24143768 - URR1B DNA MER1_type 0 225 8 7 1347 226 330 192 33 chr9 99933574 99933756 -24142416 + MLT1A0 LTR MaLR 99 309 -56 7 1347 541 243 43 100 chr9 99934018 99934228 -24141944 - B3A SINE B2 0 198 1 7 1347 190 321 36 0 chr9 99934946 99935002 -24141170 - L4 LINE RTE -202 1827 1770 7 1347 383 256 33 22 chr9 99935193 99935285 -24140887 + RSINE1 SINE B4 13 105 -60 7 1347 384 22 0 0 chr9 99935312 99935357 -24140815 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1347 1078 295 34 11 chr9 99935718 99936068 -24140104 + ORR1E LTR MaLR 2 359 0 7 1347 313 299 167 51 chr9 99936496 99936711 -24139461 - L4 LINE RTE -1420 609 370 7 1347 1477 266 78 52 chr9 99937256 99938173 -24137999 - L1MB7 LINE L1 -53 6629 5689 7 1347 549 314 98 14 chr9 99938287 99938726 -24137446 - L1MB7 LINE L1 -941 5703 5228 7 1347 331 358 6 6 chr9 99938721 99938898 -24137274 + Lx8 LINE L1 7001 7177 -296 7 1347 495 118 0 0 chr9 99939075 99939151 -24137021 + (GA)n Simple_repeat Simple_repeat 2 77 0 7 1347 303 305 38 15 chr9 99939345 99939478 -24136694 - L1MB7 LINE L1 -6357 185 50 7 1347 956 217 59 5 chr9 99939515 99939719 -24136453 - B3 SINE B2 0 216 2 7 1347 416 35 0 17 chr9 99940024 99940083 -24136089 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1347 2039 48 0 0 chr9 99940177 99940425 -24135747 + L1Md_F2 LINE L1 6323 6570 -12 7 1347 360 239 20 6 chr9 99940636 99940757 -24135415 + L1MB2 LINE L1 5812 5930 -241 7 1347 303 292 11 142 chr9 99940901 99941122 -24135050 + MT2B LTR ERVL 75 264 -320 7 1347 733 153 68 8 chr9 99941019 99941151 -24135021 + B1_Mur3 SINE Alu 10 149 0 7 1347 585 144 0 0 chr9 99941159 99941263 -24134909 + (TA)n Simple_repeat Simple_repeat 2 105 0 7 1347 180 0 0 0 chr9 99941264 99941284 -24134888 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 1347 542 290 142 120 chr9 99941732 99942132 -24134040 - MT2A LTR ERVL -124 409 1 7 1347 22 70 0 0 chr9 99943218 99943261 -24132911 + AT_rich Low_complexity Low_complexity 1 43 0 7 1347 3358 158 95 28 chr9 99943342 99943993 -24132179 - RMER1B Other Other -9 1057 363 7 1347 2220 69 7 72 chr9 99944051 99944409 -24131763 + ORR1A2 LTR MaLR 1 378 -1 7 1347 352 245 21 11 chr9 99944468 99944563 -24131609 - PB1D10 SINE Alu -17 100 5 7 1347 303 357 29 12 chr9 99944752 99944922 -24131250 - L1MC4 LINE L1 -522 7520 7348 7 1347 255 273 56 22 chr9 99945045 99945135 -24131037 + MER21B LTR ERV1 615 707 -156 7 1347 330 266 106 48 chr9 99945171 99945463 -24130709 - L1M5 LINE L1 -2980 3166 2858 7 1347 900 158 203 0 chr9 99945470 99945647 -24130525 - B3 SINE B2 -3 213 1 7 1347 747 231 70 17 chr9 99945701 99945873 -24130299 - B3A SINE B2 -16 182 2 7 1347 205 349 0 0 chr9 99947482 99947565 -24128607 - L2a LINE L2 -265 3161 3079 7 1347 191 364 57 0 chr9 99947706 99947794 -24128378 - L2a LINE L2 -523 2896 2804 7 1347 2823 162 69 84 chr9 99948153 99948773 -24127399 + RMER19C LTR ERVK 1 611 0 7 1347 1352 221 123 6 chr9 99949201 99949519 -24126653 - Lx8 LINE L1 -62 7411 7057 7 1347 1900 188 23 5 chr9 99949635 99950030 -24126142 + MTD LTR MaLR 18 419 0 7 1347 266 220 14 13 chr9 99950313 99950389 -24125783 - Lx8 LINE L1 -1846 5850 5775 7 1347 25 0 0 0 chr9 99950411 99950436 -24125736 + AT_rich Low_complexity Low_complexity 1 25 0 7 1347 1219 294 125 20 chr9 99950473 99951121 -24125051 - Lx8 LINE L1 -731 5149 4434 7 1347 650 200 27 14 chr9 99951138 99951285 -24124887 + B3A SINE B2 1 149 -49 7 1347 208 143 0 0 chr9 99951404 99951439 -24124733 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 7 1347 376 281 47 23 chr9 99951486 99951653 -24124519 - L1_Rod LINE L1 -3610 2533 2367 7 1347 299 71 0 4 chr9 99951661 99951722 -24124450 - L1_Mus1 LINE L1 0 6567 6514 7 1347 2574 100 0 0 chr9 99951715 99952066 -24124106 + L1_Mus1 LINE L1 6185 6535 -103 7 1347 532 230 20 13 chr9 99952050 99952200 -24123972 - L1_Mur3 LINE L1 -3498 2382 2232 7 1347 215 116 47 0 chr9 99952210 99952253 -24123919 + CT-rich Low_complexity Low_complexity 4 48 0 7 1347 5043 198 44 61 chr9 99952259 99953686 -24122486 - Lx6 LINE L1 -628 6832 5410 7 1347 1789 276 51 23 chr9 99953688 99954436 -24121736 - L1_Mur3 LINE L1 -3636 2244 1476 7 1347 210 37 0 0 chr9 99954457 99954484 -24121688 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 7 1347 275 267 33 0 chr9 99956453 99956513 -24119659 - ID2 SINE ID 0 83 22 7 1347 711 221 40 7 chr9 99956634 99956784 -24119388 + B3A SINE B2 8 162 -36 7 1347 22 35 0 0 chr9 99957635 99957664 -24118508 + AT_rich Low_complexity Low_complexity 1 29 0 7 1347 485 268 65 7 chr9 99958663 99958802 -24117370 + B1F SINE Alu 1 147 -2 7 1347 652 256 0 0 chr9 99958822 99958951 -24117221 + B3A SINE B2 1 129 -69 7 1347 1435 188 138 6 chr9 99959811 99959999 -24116173 - ORR1D1 LTR MaLR -5 369 170 7 1347 512 13 52 0 chr9 99959999 99960076 -24116096 + (TG)n Simple_repeat Simple_repeat 1 81 0 7 1347 1435 188 138 6 chr9 99960076 99960213 -24115959 - ORR1D1 LTR MaLR -205 169 2 7 1347 195 42 0 0 chr9 99961596 99961620 -24114552 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1347 621 124 0 0 chr9 99962443 99962540 -24113632 + (GGGA)n Simple_repeat Simple_repeat 2 98 0 7 1347 306 0 0 0 chr9 99963096 99963130 -24113042 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1347 510 17 0 0 chr9 99963335 99963394 -24112778 + (CTA)n Simple_repeat Simple_repeat 1 59 0 7 1347 189 0 0 0 chr9 99964125 99964146 -24112026 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 7 1347 699 259 6 6 chr9 99964153 99964312 -24111860 + RSINE1 SINE B4 3 161 -4 7 1347 3551 295 30 40 chr9 99964818 99965200 -24110972 - L1_Mur3 LINE L1 -635 5665 5255 8 1347 194 62 31 0 chr9 99965200 99965232 -24110940 + (TGG)n Simple_repeat Simple_repeat 1 33 0 8 1347 3551 293 33 40 chr9 99965232 99966450 -24109722 - L1_Mur3 LINE L1 -626 5254 4043 8 1347 396 167 15 4 chr9 99966475 99966567 -24109605 - L1_Mur3 LINE L1 -1955 3931 3840 8 1347 1622 266 34 8 chr9 99966642 99967112 -24109060 - MTD-int LTR MaLR -888 482 1 8 1347 277 254 0 0 chr9 99967132 99967199 -24108973 - MTD LTR MaLR -26 393 327 8 1347 666 275 77 10 chr9 99967225 99967420 -24108752 - MTD LTR MaLR -209 210 3 8 1347 287 104 0 20 chr9 99967465 99967514 -24108658 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1347 596 312 68 5 chr9 99967592 99967782 -24108390 - B4A SINE B4 -86 206 5 8 1347 510 83 0 0 chr9 99968000 99968072 -24108100 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 8 1347 182 265 0 20 chr9 99968393 99968443 -24107729 + MIR SINE MIR 99 147 -61 8 1347 611 319 43 8 chr9 99968720 99968973 -24107199 - Lx9 LINE L1 -151 7493 7232 8 1347 4895 188 31 23 chr9 99969321 99970253 -24105919 - Lx9 LINE L1 -1 7643 6694 8 1347 1814 175 82 0 chr9 99970253 99970596 -24105576 + ORR1D1 LTR MaLR 1 371 -3 8 1347 4895 188 31 23 chr9 99970596 99970663 -24105509 - Lx9 LINE L1 -951 6693 6636 8 1347 843 273 8 49 chr9 99970785 99971028 -24105144 + B4 SINE B4 21 253 -39 8 1347 387 0 0 0 chr9 99971099 99971142 -24105030 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1347 322 245 0 87 chr9 99971258 99971361 -24104811 - PB1D10 SINE Alu -1 116 23 8 1347 1179 209 9 0 chr9 99971398 99971609 -24104563 - B3 SINE B2 -3 213 1 8 1347 300 342 19 32 chr9 99971902 99972059 -24104113 + MLT1A LTR MaLR 6 160 -214 8 1347 557 305 97 2 chr9 99972138 99972365 -24103807 - MTEa LTR MaLR -135 244 1 8 1347 292 272 163 0 chr9 99973660 99973807 -24102365 + LTR16D LTR ERVL 481 651 0 8 1347 247 197 14 27 chr9 99973912 99973985 -24102187 + (TA)n Simple_repeat Simple_repeat 2 73 0 8 1347 233 238 111 12 chr9 99974103 99974184 -24101988 + L2a LINE L2 3041 3129 -297 8 1347 36019 35 1 0 chr9 99974246 99980096 -24096076 + L1Md_T LINE L1 1 5589 -297 8 1347 9165 6 0 0 chr9 99980096 99981092 -24095080 + L1Md_T LINE L1 5590 6585 0 8 1347 682 198 13 0 chr9 99981107 99981264 -24094908 + (TA)n Simple_repeat Simple_repeat 1 159 0 8 1347 265 150 0 0 chr9 99981264 99981304 -24094868 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1347 190 277 15 30 chr9 99981305 99981372 -24094800 + L2a LINE L2 3361 3426 0 8 1347 1075 218 0 5 chr9 99981375 99981592 -24094580 + B3 SINE B2 1 216 0 8 1347 26 0 0 0 chr9 99982947 99982973 -24093199 + AT_rich Low_complexity Low_complexity 1 26 0 8 1347 1035 152 0 0 chr9 99983224 99983402 -24092770 + CT-rich Low_complexity Low_complexity 3 180 0 8 1347 186 43 0 0 chr9 99983403 99983426 -24092746 + (TTC)n Simple_repeat Simple_repeat 3 25 0 8 1347 407 265 12 12 chr9 99983430 99983462 -24092710 + polypyrimidine Low_complexity Low_complexity 142 175 0 8 1347 1037 131 0 11 chr9 99983462 99983639 -24092533 + (TTCTCC)n Simple_repeat Simple_repeat 2 176 0 8 1347 407 265 12 12 chr9 99983639 99983778 -24092394 + CT-rich Low_complexity Low_complexity 5 141 0 8 1347 1290 14 0 0 chr9 99983789 99983937 -24092235 + (TTCTCC)n Simple_repeat Simple_repeat 3 150 0 8 1347 21 57 0 0 chr9 99984121 99984156 -24092016 + AT_rich Low_complexity Low_complexity 1 35 0 8 1347 591 273 10 34 chr9 99984157 99984366 -24091806 - B3A SINE B2 -11 205 2 8 1347 1140 243 88 57 chr9 99984965 99985318 -24090854 - ORR1D2 LTR MaLR -4 366 3 8 1347 293 269 75 0 chr9 99986784 99986851 -24089321 - ID4_ SINE ID -11 72 1 8 1347 270 81 0 0 chr9 99987358 99987395 -24088777 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1347 180 176 0 0 chr9 99987394 99987428 -24088744 + GA-rich Low_complexity Low_complexity 4 37 0 8 1347 871 146 18 0 chr9 99989345 99989516 -24086656 + GA-rich Low_complexity Low_complexity 3 176 0 8 1347 3366 48 0 2 chr9 99993265 99993662 -24082510 - MTA_Mm LTR MaLR 0 396 1 8 1347 198 0 0 0 chr9 99993688 99993710 -24082462 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1347 2631 131 34 17 chr9 99995066 99995478 -24080694 - MTC LTR MaLR 0 421 3 8 1347 198 0 0 0 chr9 99995751 99995773 -24080399 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1347 496 269 0 25 chr9 99996752 99996874 -24079298 - ID_B1 SINE B4 -21 203 85 8 1347 2077 148 43 35 chr9 99998228 99998599 -24077573 + ORR1D1 LTR MaLR 1 374 0 8 1347 772 327 29 15 chr9 99999087 99999360 -24076812 - B4A SINE B4 -1 291 15 8 1347 396 59 0 0 chr9 99999949 100000000 -24076172 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 8 1347 333 0 0 0 chr9 100000000 100000037 -24076135 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1347 307 407 45 15 chr9 100000145 100000347 -24075825 + L1M5 LINE L1 2545 2752 -3394 2 1347 324 248 176 0 chr9 100000422 100000529 -24075643 + B1F SINE Alu 8 134 -15 3 1347 23 33 0 0 chr9 100000663 100000693 -24075479 + AT_rich Low_complexity Low_complexity 1 30 0 4 1347 458 257 118 88 chr9 100001070 100001366 -24074806 + B4A SINE B4 2 277 -15 5 1347 225 132 0 0 chr9 100001530 100001568 -24074604 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 6 1347 357 24 0 0 chr9 100001568 100001610 -24074562 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 7 1347 257 324 33 142 chr9 100001631 100001962 -24074210 + L1MEg LINE L1 88 382 -5702 8 1347 252 317 87 0 chr9 100002070 100002174 -24073998 + HAL1 LINE L1 1617 1729 -778 9 1347 235 288 89 60 chr9 100002385 100002699 -24073473 + HAL1 LINE L1 2002 2324 -183 9 1347 966 123 6 12 chr9 100002780 100002953 -24073219 + (TTCC)n Simple_repeat Simple_repeat 2 173 0 1 1347 643 209 134 6 chr9 100003046 100003210 -24072962 + B3A SINE B2 3 187 -11 1 1347 4512 77 43 2 chr9 100003232 100003795 -24072377 + Lx LINE L1 6063 6648 -6 1 1347 2188 47 0 0 chr9 100003824 100004080 -24072092 - L1Md_F3 LINE L1 -156 5727 5472 1 1347 7969 29 7 0 chr9 100004080 100004968 -24071204 + L1Md_F3 LINE L1 5689 6582 -2 1 1347 441 0 0 0 chr9 100005013 100005062 -24071110 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1347 476 285 116 8 chr9 100005946 100006204 -24069968 - L1MD2 LINE L1 -5226 1321 1036 1 1347 522 234 181 30 chr9 100006238 100006433 -24069739 - ORR1E LTR MaLR 0 370 158 1 1347 423 108 36 12 chr9 100006439 100006523 -24069649 + GA-rich Low_complexity Low_complexity 2 87 0 1 1347 700 265 28 34 chr9 100006526 100006702 -24069470 - ORR1E LTR MaLR -180 179 5 1 1347 500 356 22 13 chr9 100006812 100007037 -24069135 - L1MD2 LINE L1 -5670 877 651 1 1347 408 356 66 14 chr9 100007177 100007388 -24068784 - L1MD2 LINE L1 -6076 471 250 1 1347 186 43 0 0 chr9 100007629 100007652 -24068520 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1347 271 279 91 23 chr9 100007796 100007884 -24068288 - B1F1 SINE Alu -55 94 1 1 1348 205 246 246 0 chr9 100008388 100008457 -24067715 - MER5A DNA MER1_type -97 92 7 2 1348 23 0 0 0 chr9 100008912 100008935 -24067237 + AT_rich Low_complexity Low_complexity 1 23 0 2 1348 241 321 45 18 chr9 100008960 100009071 -24067101 - MLT1I LTR MaLR -6 405 292 2 1348 1917 179 68 29 chr9 100009317 100009702 -24066470 + MTD LTR MaLR 1 400 -19 2 1348 2755 207 45 35 chr9 100010220 100010825 -24065347 - RMER19C LTR ERVK 0 611 1 2 1348 315 0 0 0 chr9 100011309 100011344 -24064828 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1348 875 150 6 81 chr9 100011764 100011924 -24064248 - B1_Mur2 SINE Alu 0 149 2 2 1348 545 325 110 0 chr9 100011945 100012145 -24064027 + MIR SINE MIR 2 223 -39 2 1348 3754 112 31 6 chr9 100012280 100012800 -24063372 + Lx4A LINE L1 6519 7051 -7 2 1348 450 254 26 26 chr9 100012858 100012975 -24063197 - L2a LINE L2 -1 3425 3309 2 1348 418 276 129 102 chr9 100013957 100014328 -24061844 + L1ME1 LINE L1 5658 6038 -141 3 1348 24 0 0 0 chr9 100014373 100014397 -24061775 + AT_rich Low_complexity Low_complexity 1 24 0 3 1348 2127 97 33 51 chr9 100014434 100014769 -24061403 - ORR1A4 LTR MaLR 0 329 1 3 1348 969 172 0 0 chr9 100015219 100015399 -24060773 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1348 506 315 75 5 chr9 100015747 100015948 -24060224 + MIR SINE MIR 17 231 -31 3 1348 221 329 196 35 chr9 100016290 100016520 -24059652 + L3b LINE CR1 143 409 -73 3 1348 202 89 0 62 chr9 100018013 100018061 -24058111 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 3 1348 231 269 0 0 chr9 100018362 100018429 -24057743 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1348 281 213 12 12 chr9 100018430 100018596 -24057576 + (TCTG)n Simple_repeat Simple_repeat 2 167 0 3 1348 297 259 0 0 chr9 100018597 100018682 -24057490 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 1348 288 133 0 0 chr9 100018689 100018749 -24057423 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1348 332 43 22 0 chr9 100018749 100018795 -24057377 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1348 255 175 0 0 chr9 100019068 100019125 -24057047 + T-rich Low_complexity Low_complexity 1 57 0 4 1348 1424 301 26 82 chr9 100019613 100020329 -24055843 - Lx9 LINE L1 0 7473 6779 4 1348 8557 50 1 0 chr9 100020319 100021358 -24054814 + L1Md_F2 LINE L1 4547 5586 -297 4 1348 8540 37 16 2 chr9 100021359 100022340 -24053832 + L1Md_F2 LINE L1 5588 6582 0 4 1348 381 309 9 0 chr9 100022342 100022464 -24053708 - Lx9 LINE L1 -706 6767 6659 4 1348 292 250 20 14 chr9 100022499 100022645 -24053527 + (TA)n Simple_repeat Simple_repeat 1 147 0 4 1348 1913 277 53 47 chr9 100022665 100023100 -24053072 - Lx9 LINE L1 -845 6799 6346 4 1348 554 40 26 0 chr9 100023100 100023176 -24052996 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 4 1348 1913 277 53 47 chr9 100023176 100023380 -24052792 - Lx9 LINE L1 -1299 6345 6156 4 1348 318 50 0 0 chr9 100023476 100023516 -24052656 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1348 825 10 0 0 chr9 100023847 100023898 -24052274 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1348 756 52 0 0 chr9 100023898 100023995 -24052177 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 1348 825 10 0 0 chr9 100023995 100024039 -24052133 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1348 270 330 25 33 chr9 100024271 100024393 -24051779 - L2a LINE L2 -1 3425 3305 5 1348 185 218 86 52 chr9 100024462 100024520 -24051652 - L2 LINE L2 -3254 165 106 5 1348 2720 146 16 21 chr9 100024557 100025092 -24051080 - Lx4B LINE L1 -715 6261 5640 5 1348 984 186 30 34 chr9 100025093 100025327 -24050845 + Lx4B LINE L1 6804 7036 -22 5 1348 225 0 0 0 chr9 100025327 100025352 -24050820 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 1348 488 271 82 28 chr9 100025657 100025839 -24050333 + MER47B DNA MER2_type 54 245 -173 5 1348 180 0 0 0 chr9 100026390 100026410 -24049762 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1348 193 321 129 12 chr9 100026720 100026805 -24049367 - MER5A DNA MER1_type -27 162 68 5 1348 530 333 15 63 chr9 100026827 100027032 -24049140 - MER68 LTR ERVL -76 487 293 6 1348 413 179 47 9 chr9 100028082 100028189 -24047983 + Lx9 LINE L1 7534 7644 0 6 1348 832 256 217 54 chr9 100028285 100028714 -24047458 - RMER20B LTR ERVK -39 588 90 6 1348 400 272 20 81 chr9 100028799 100028843 -24047329 + ID_B1 SINE B4 65 203 -21 6 1348 411 235 39 19 chr9 100028843 100028935 -24047237 + B1F SINE Alu 23 116 -33 6 1348 361 262 12 12 chr9 100028935 100029020 -24047152 + B4 SINE B4 4 88 -204 6 1348 231 237 26 0 chr9 100029560 100029636 -24046536 - MER117 DNA MER1_type -49 148 71 6 1348 539 308 51 58 chr9 100029711 100030004 -24046168 - B4A SINE B4 0 292 2 6 1348 545 272 81 42 chr9 100030011 100030295 -24045877 + MER33 DNA MER1_type 26 320 -4 6 1348 28 0 0 0 chr9 100031922 100031950 -24044222 + AT_rich Low_complexity Low_complexity 1 28 0 6 1348 2700 86 0 0 chr9 100033471 100033798 -24042374 - ORR1A2 LTR MaLR 0 327 1 7 1348 755 333 69 43 chr9 100034493 100034913 -24041259 - MT2A LTR ERVL -96 437 7 7 1348 900 44 0 0 chr9 100035257 100035370 -24040802 + (TG)n Simple_repeat Simple_repeat 1 113 0 7 1348 204 40 0 0 chr9 100036357 100036382 -24039790 + (CAAGG)n Simple_repeat Simple_repeat 5 29 0 7 1348 444 278 134 29 chr9 100036689 100036974 -24039198 + L1MC4a LINE L1 6127 6462 -1420 7 1348 536 121 11 0 chr9 100036974 100037065 -24039107 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 7 1348 348 327 9 9 chr9 100037074 100037182 -24038990 + L1MC4a LINE L1 6492 6599 -1283 7 1348 786 342 45 32 chr9 100037208 100037418 -24038754 + L1MC4a LINE L1 6683 6893 -989 7 1348 186 43 0 0 chr9 100037418 100037441 -24038731 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1348 786 342 45 32 chr9 100037441 100037671 -24038501 + L1MC4a LINE L1 6894 7129 -753 7 1348 216 0 0 0 chr9 100037869 100037893 -24038279 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1348 202 0 29 57 chr9 100037913 100037948 -24038224 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 7 1348 267 321 60 40 chr9 100037967 100038222 -24037950 + L1MC4a LINE L1 7608 7982 -13 7 1348 772 83 0 0 chr9 100038456 100038564 -24037608 + L1_Mus1 LINE L1 6460 6567 0 7 1348 25 0 0 0 chr9 100038564 100038589 -24037583 + AT_rich Low_complexity Low_complexity 1 25 0 8 1348 333 0 0 0 chr9 100038590 100038627 -24037545 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 8 1348 181 300 85 24 chr9 100038827 100038909 -24037263 + L2c LINE L2 3108 3194 -193 8 1348 451 338 115 9 chr9 100039543 100039866 -24036306 + L2 LINE L2 2723 3079 -340 8 1348 2486 96 12 9 chr9 100040762 100041088 -24035084 + ORR1A2 LTR MaLR 1 327 0 8 1348 276 333 28 45 chr9 100041088 100041267 -24034905 + MIRb SINE MIR 84 259 -9 8 1348 242 205 0 0 chr9 100042362 100042401 -24033771 + URR1B DNA MER1_type 3 41 -184 8 1348 1465 264 67 48 chr9 100043928 100044493 -24031679 + Lx9 LINE L1 7067 7642 -2 8 1348 1128 101 117 12 chr9 100044625 100044796 -24031376 + B2_Mm2 SINE B2 2 190 -5 8 1348 25936 136 13 53 chr9 100044822 100049442 -24026730 + Lx LINE L1 398 4734 -1149 8 1348 258 0 71 0 chr9 100049442 100049484 -24026688 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 9 1348 25936 128 21 38 chr9 100049484 100051390 -24024782 + Lx LINE L1 4735 6654 0 8 1348 409 289 43 31 chr9 100051917 100052171 -24024001 + L1M4 LINE L1 3220 3476 -2670 9 1348 2105 182 53 6 chr9 100052190 100052550 -24023622 + ORR1C1 LTR MaLR 2 378 0 9 1348 468 0 0 0 chr9 100052731 100052783 -24023389 + (TC)n Simple_repeat Simple_repeat 2 53 0 9 1348 717 287 75 35 chr9 100052865 100053291 -24022881 + L1M4 LINE L1 3638 4080 -2066 9 1348 482 305 17 34 chr9 100053284 100053518 -24022654 + L1_Rod LINE L1 2253 2482 -3365 9 1348 4250 34 0 10 chr9 100053679 100054161 -24022011 + L1_Mus1 LINE L1 6091 6567 0 9 1348 305 295 214 32 chr9 100054175 100054681 -24021491 + L1_Rod LINE L1 2830 3427 -2716 9 1348 1810 153 72 0 chr9 100054676 100054996 -24021176 + L1_Mur3 LINE L1 4375 4717 -1163 9 1348 283 334 53 2 chr9 100055567 100055717 -24020455 - L1MA6 LINE L1 -4 6296 6141 9 1348 506 296 153 50 chr9 100055821 100056319 -24019853 - L1MEc LINE L1 -2728 3591 3043 9 1348 398 314 105 10 chr9 100056416 100056625 -24019547 - L1MEc LINE L1 -3600 2719 2491 9 1348 356 299 107 13 chr9 100056865 100057024 -24019148 - MER20 DNA MER1_type -12 207 34 1 1348 399 312 187 23 chr9 100057063 100057453 -24018719 - L1MEc LINE L1 -4273 2127 1674 9 1348 469 284 122 75 chr9 100057816 100057852 -24018320 - B4A SINE B4 0 292 265 1 1348 405 0 0 0 chr9 100057852 100057897 -24018275 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1348 469 284 122 75 chr9 100057897 100058138 -24018034 - B4A SINE B4 -28 264 2 1 1348 333 115 0 33 chr9 100058858 100058948 -24017224 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 1 1348 1283 14 7 0 chr9 100058967 100059114 -24017058 - B1_Mus1 SINE Alu 0 148 1 1 1348 418 240 20 128 chr9 100059155 100059351 -24016821 - Lx8 LINE L1 -8 7465 7291 1 1348 705 218 0 0 chr9 100060410 100060575 -24015597 + CT-rich Low_complexity Low_complexity 2 166 0 1 1348 693 231 0 33 chr9 100060910 100061062 -24015110 + B1_Mur1 SINE Alu 1 147 -2 1 1348 535 306 115 66 chr9 100061078 100061442 -24014730 + MLT1C LTR MaLR 46 427 -40 1 1348 3784 85 36 11 chr9 100061860 100062394 -24013778 + L1_Mus4 LINE L1 6090 6636 0 1 1348 9355 89 1 1 chr9 100062809 100064779 -24011393 + L1_Mus1 LINE L1 4598 6567 0 1 1348 186 209 0 0 chr9 100065044 100065087 -24011085 + CT-rich Low_complexity Low_complexity 3 45 0 1 1348 23 0 0 0 chr9 100065322 100065345 -24010827 + AT_rich Low_complexity Low_complexity 1 23 0 1 1348 211 288 74 12 chr9 100065982 100066063 -24010109 + MIRc SINE MIR 62 147 -121 1 1348 555 229 90 0 chr9 100066121 100066243 -24009929 + B1F SINE Alu 1 133 -16 1 1348 310 212 20 0 chr9 100067659 100067758 -24008414 + CT-rich Low_complexity Low_complexity 2 102 0 1 1348 675 94 0 0 chr9 100068228 100068324 -24007848 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 1348 243 0 0 0 chr9 100069624 100069651 -24006521 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1348 279 288 149 26 chr9 100071199 100071427 -24004745 - Tigger14a DNA MER2_type -35 289 34 1 1348 522 0 0 0 chr9 100071601 100071659 -24004513 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1348 624 172 0 0 chr9 100072561 100072730 -24003442 + CT-rich Low_complexity Low_complexity 2 170 0 1 1348 661 301 33 18 chr9 100072975 100073249 -24002923 + Tigger13a DNA MER2_type 436 713 -58 1 1348 22 70 0 0 chr9 100073406 100073449 -24002723 + AT_rich Low_complexity Low_complexity 1 43 0 1 1348 7673 101 45 14 chr9 100074279 100075729 -24000443 - Lx3C LINE L1 -200 6776 5285 1 1348 200 59 0 29 chr9 100075729 100075764 -24000408 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1348 5765 100 57 10 chr9 100075764 100076054 -24000118 - Lx3C LINE L1 -602 5284 4979 1 1348 924 270 40 8 chr9 100077087 100077337 -23998835 - Lx9 LINE L1 -1050 6594 6337 1 1348 369 0 0 0 chr9 100077347 100077388 -23998784 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1348 244 211 0 0 chr9 100077462 100077514 -23998658 + Lx9 LINE L1 6837 6888 -756 1 1348 2113 157 70 16 chr9 100077518 100077888 -23998284 - ORR1B1 LTR MaLR -4 390 1 1 1348 2967 163 52 32 chr9 100077888 100078504 -23997668 - ORR1B1-int LTR MaLR 0 1509 882 1 1348 1569 172 62 3 chr9 100078488 100078797 -23997375 - ORR1B1 LTR MaLR -67 327 1 1 1348 1382 269 56 23 chr9 100078858 100079288 -23996884 + Lx9 LINE L1 6972 7415 -229 1 1348 357 82 0 0 chr9 100079288 100079337 -23996835 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1 1348 939 289 17 82 chr9 100079595 100079970 -23996202 - MTEa LTR MaLR -13 366 16 1 1348 4415 50 2 0 chr9 100080512 100081037 -23995135 - L1_Mus1 LINE L1 -1 6566 6041 1 1348 284 252 168 0 chr9 100081440 100081547 -23994625 + MLT2B2 LTR ERVL 1 125 -390 1 1348 234 0 0 0 chr9 100081684 100081710 -23994462 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1348 180 77 0 0 chr9 100081833 100081859 -23994313 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1348 1164 318 89 52 chr9 100081866 100082460 -23993712 + Lx8 LINE L1 6853 7468 -5 1 1348 365 356 23 8 chr9 100082504 100082637 -23993535 + B4A SINE B4 10 144 -148 1 1348 1838 104 0 52 chr9 100082614 100082919 -23993253 + MTB LTR MaLR 112 400 0 1 1348 720 243 64 10 chr9 100083621 100083825 -23992347 + B3 SINE B2 2 216 0 1 1348 1386 183 65 26 chr9 100083923 100084231 -23991941 + ORR1B2 LTR MaLR 1 320 -47 1 1348 640 216 30 18 chr9 100084450 100084615 -23991557 - ORR1C1 LTR MaLR -68 310 144 1 1348 240 306 81 24 chr9 100085277 100085488 -23990684 - L1MD LINE L1 -1786 4360 4138 1 1348 3828 223 40 38 chr9 100085537 100085858 -23990314 - Lx9 LINE L1 0 7644 7329 1 1348 1976 206 13 217 chr9 100085858 100086626 -23989546 + RMER19C LTR ERVK 1 611 0 1 1348 3828 223 40 38 chr9 100086626 100087246 -23988926 - Lx9 LINE L1 -316 7328 6701 1 1348 1226 279 101 39 chr9 100087663 100088434 -23987738 - L1M4 LINE L1 -969 5177 4359 1 1348 329 250 191 20 chr9 100088435 100088639 -23987533 - L1M4 LINE L1 -2683 3463 3225 1 1348 852 267 5 0 chr9 100088666 100088853 -23987319 - ID_B1 SINE B4 -31 193 6 1 1348 239 235 22 45 chr9 100088904 100088993 -23987179 - L1M4 LINE L1 -3049 3091 3005 1 1348 679 297 141 70 chr9 100088979 100090322 -23985850 - L1MEe LINE L1 -3227 2919 1512 1 1348 351 44 0 0 chr9 100090478 100090523 -23985649 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1 1348 1275 184 157 103 chr9 100090524 100091027 -23985145 - Lx7 LINE L1 -9 7687 7158 1 1348 299 170 0 0 chr9 100091443 100091490 -23984682 - Lx7 LINE L1 -483 7213 7167 1 1348 324 0 0 0 chr9 100091522 100091558 -23984614 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1348 1759 127 74 0 chr9 100091581 100091880 -23984292 + ORR1A4 LTR MaLR 1 321 -8 1 1348 427 263 54 15 chr9 100092215 100092445 -23983727 - MTE2b LTR MaLR -73 306 3 1 1348 223 208 114 25 chr9 100092499 100092578 -23983594 - L2a LINE L2 -99 3327 3242 1 1348 587 254 114 44 chr9 100092714 100092986 -23983186 + B4A SINE B4 1 291 -1 1 1348 362 244 7 0 chr9 100093014 100093149 -23983023 + (CA)n Simple_repeat Simple_repeat 2 137 0 1 1348 423 0 0 0 chr9 100093149 100093196 -23982976 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1348 588 239 7 34 chr9 100093219 100093366 -23982806 - B3A SINE B2 -55 143 1 1 1348 1069 182 97 15 chr9 100093633 100093901 -23982271 - MTD LTR MaLR -124 295 6 1 1348 29 28 0 0 chr9 100095830 100095866 -23980306 + AT_rich Low_complexity Low_complexity 1 36 0 1 1348 705 324 130 6 chr9 100096100 100096438 -23979734 + MLT1A1 LTR MaLR 23 402 -6 1 1348 1237 271 156 24 chr9 100096974 100097552 -23978620 - Lx8 LINE L1 -1 7472 6819 1 1348 380 155 10 40 chr9 100097574 100097675 -23978497 + RLTR15 LTR ERVK 34 131 -228 1 1348 327 274 41 56 chr9 100097822 100098019 -23978153 + RLTR15 LTR ERVK 166 359 0 1 1348 1903 290 46 27 chr9 100098023 100098468 -23977704 - Lx8 LINE L1 -655 6818 6368 1 1348 1696 192 87 20 chr9 100098468 100098861 -23977311 - MTD LTR MaLR 0 419 1 1 1348 1903 307 52 32 chr9 100098861 100099249 -23976923 - Lx8 LINE L1 -1329 6367 5957 1 1348 2239 172 141 19 chr9 100099348 100099468 -23976704 - RMER1B Other Other -3 1063 942 1 1348 231 36 0 0 chr9 100099468 100099496 -23976676 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 1348 2239 172 141 19 chr9 100099496 100099842 -23976330 - RMER1B Other Other -125 941 540 1 1348 1792 192 74 23 chr9 100099814 100100208 -23975964 - RMER1B Other Other -652 414 1 1 1348 720 270 103 30 chr9 100100244 100100546 -23975626 - Tigger13a DNA MER2_type -292 479 156 1 1348 224 263 92 0 chr9 100101377 100101453 -23974719 + MIRc SINE MIR 100 182 -86 1 1348 474 18 0 0 chr9 100101940 100101995 -23974177 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1348 22 35 0 0 chr9 100102488 100102517 -23973655 + AT_rich Low_complexity Low_complexity 1 29 0 1 1348 1003 207 72 5 chr9 100102594 100102788 -23973384 - B3 SINE B2 -9 207 1 1 1348 627 39 0 0 chr9 100103184 100103262 -23972910 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1348 281 47 23 0 chr9 100104194 100104237 -23971935 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1348 1051 32 16 0 chr9 100104830 100104956 -23971216 - B1_Mus2 SINE Alu -19 128 1 1 1348 189 0 0 0 chr9 100105572 100105593 -23970579 + (TGG)n Simple_repeat Simple_repeat 1 21 0 1 1348 200 130 22 0 chr9 100105597 100105643 -23970529 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1348 180 0 0 0 chr9 100105724 100105744 -23970428 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1348 1203 74 0 0 chr9 100105744 100105906 -23970266 - B2_Mm2 SINE B2 -33 162 1 1 1348 369 288 47 23 chr9 100105908 100106036 -23970136 - ID_B1 SINE B4 -1 223 93 1 1348 775 166 108 0 chr9 100106479 100106636 -23969536 - Lx4A LINE L1 -727 6331 6158 1 1348 4051 139 38 14 chr9 100106640 100107332 -23968840 + Lx4A LINE L1 6344 7051 -7 1 1348 21 0 0 0 chr9 100107332 100107353 -23968819 + AT_rich Low_complexity Low_complexity 1 21 0 1 1348 382 336 126 31 chr9 100108221 100108611 -23967561 - MLT1H LTR MaLR -44 505 79 1 1348 1011 291 54 43 chr9 100108907 100109156 -23967016 - Lx8 LINE L1 0 7473 7216 1 1348 762 11 0 0 chr9 100109156 100109243 -23966929 + (TCTCC)n Simple_repeat Simple_repeat 1 87 0 1 1348 1011 291 54 43 chr9 100109243 100109478 -23966694 - Lx8 LINE L1 -258 7215 6985 1 1348 204 125 0 0 chr9 100112064 100112096 -23964076 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1348 243 60 60 0 chr9 100112128 100112178 -23963994 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1348 238 340 35 21 chr9 100112586 100112730 -23963442 + MIR SINE MIR 107 252 -10 1 1348 396 55 0 0 chr9 100113482 100113537 -23962635 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1348 361 287 15 52 chr9 100113678 100113814 -23962358 - MIRb SINE MIR -129 139 9 1 1348 272 308 53 23 chr9 100113960 100114093 -23962079 + LTR90B LTR LTR 633 769 -27 1 1348 252 0 0 0 chr9 100115466 100115494 -23960678 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1348 22 0 0 0 chr9 100115516 100115538 -23960634 + AT_rich Low_complexity Low_complexity 1 22 0 1 1348 708 186 0 9 chr9 100115851 100115965 -23960207 + B1_Mur4 SINE Alu 11 123 -27 1 1348 343 250 49 99 chr9 100115853 100115995 -23960177 + MT2B LTR ERVL 176 310 -291 1 1348 597 286 104 122 chr9 100116108 100116695 -23959477 - RMER13A LTR ERVK -23 604 21 1 1348 11403 165 17 15 chr9 100116720 100118616 -23957556 + MERVK26-int LTR ERVK 5018 6917 -2 1 1348 24 32 0 0 chr9 100118856 100118887 -23957285 + AT_rich Low_complexity Low_complexity 1 31 0 1 1348 560 353 113 61 chr9 100120615 100121077 -23955095 - MLT1H1 LTR MaLR -69 486 1 1 1348 3076 46 0 3 chr9 100121218 100121565 -23954607 + ORR1A1 LTR MaLR 1 346 0 1 1348 369 285 136 16 chr9 100121620 100121745 -23954427 - MER5A1 DNA MER1_type -26 140 1 1 1348 290 261 48 35 chr9 100121785 100121888 -23954284 + PB1D7 SINE Alu 33 126 -23 2 1348 383 339 74 39 chr9 100122449 100122707 -23953465 + L1MC4 LINE L1 2022 2288 -3927 2 1348 33 73 0 0 chr9 100123632 100123700 -23952472 + AT_rich Low_complexity Low_complexity 1 68 0 2 1348 374 327 90 13 chr9 100123749 100123904 -23952268 - MER5B DNA MER1_type -11 167 1 2 1348 239 265 129 70 chr9 100124216 100124589 -23951583 + L1MC4 LINE L1 4452 4846 -1368 2 1348 266 285 93 42 chr9 100124919 100125135 -23951037 + L1MC LINE L1 5256 5482 -2400 2 1348 850 243 103 20 chr9 100125403 100125655 -23950517 + B4A SINE B4 2 274 -18 2 1348 368 200 11 0 chr9 100125702 100125792 -23950380 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1348 314 238 0 0 chr9 100125799 100125862 -23950310 + HAL1-3A_ME LINE L1 1975 2037 -821 2 1348 941 115 7 21 chr9 100125863 100126005 -23950167 - B1_Mur3 SINE Alu 0 149 10 2 1348 433 335 18 60 chr9 100125869 100126037 -23950135 - B4A SINE B4 -71 221 61 2 1348 1287 61 0 0 chr9 100126075 100126223 -23949949 + B1_Mus1 SINE Alu 1 148 0 2 1348 477 0 0 0 chr9 100127795 100127848 -23948324 + (TAGG)n Simple_repeat Simple_repeat 3 55 0 2 1348 263 386 11 0 chr9 100129692 100129780 -23946392 - MLT1K LTR MaLR -359 236 148 2 1348 372 43 0 0 chr9 100130611 100130657 -23945515 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1348 389 268 15 54 chr9 100130824 100130954 -23945218 - ID_B1 SINE B4 -8 216 92 2 1348 357 348 68 38 chr9 100131557 100131820 -23944352 - RMER15 LTR ERVL 0 575 305 2 1348 5958 71 0 7 chr9 100132149 100132882 -23943290 - L1Md_F2 LINE L1 -12 6570 5843 2 1348 320 264 49 92 chr9 100132982 100133124 -23943048 + ORR1E LTR MaLR 218 353 -6 2 1348 234 255 127 87 chr9 100133164 100133314 -23942858 - MLT1H1 LTR MaLR -108 447 292 2 1348 21 0 0 0 chr9 100134408 100134429 -23941743 + AT_rich Low_complexity Low_complexity 1 21 0 2 1348 21 0 0 0 chr9 100134653 100134674 -23941498 + AT_rich Low_complexity Low_complexity 1 21 0 2 1348 1055 130 6 6 chr9 100135784 100135946 -23940226 + B2_Mm2 SINE B2 5 166 -29 2 1348 266 0 29 0 chr9 100135951 100135985 -23940187 + (TAA)n Simple_repeat Simple_repeat 1 35 0 2 1348 1018 219 50 0 chr9 100136285 100136486 -23939686 + B3 SINE B2 1 211 -5 2 1348 184 330 83 28 chr9 100136540 100136649 -23939523 + MIRb SINE MIR 130 244 -24 2 1348 302 131 0 32 chr9 100136856 100136919 -23939253 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 2 1348 432 0 0 0 chr9 100136999 100137047 -23939125 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1348 261 0 0 0 chr9 100138042 100138071 -23938101 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1348 438 172 129 0 chr9 100138071 100138164 -23938008 + B1F2 SINE Alu 23 127 -22 2 1348 247 324 57 38 chr9 100138270 100138376 -23937796 - MIRb SINE MIR -34 234 127 2 1348 465 244 94 0 chr9 100138562 100138689 -23937483 + B1F2 SINE Alu 3 141 -8 2 1348 636 147 0 0 chr9 100138689 100138825 -23937347 + (TAGA)n Simple_repeat Simple_repeat 1 136 0 2 1348 386 250 27 91 chr9 100138850 100138960 -23937212 + PB1D10 SINE Alu 1 103 -14 2 1349 22 56 0 0 chr9 100139455 100139491 -23936681 + AT_rich Low_complexity Low_complexity 1 36 0 2 1349 944 327 32 21 chr9 100139788 100140254 -23935918 - L1M5 LINE L1 -400 5724 5254 2 1349 435 287 149 25 chr9 100140551 100140712 -23935460 + B3A SINE B2 3 183 -15 2 1349 31 26 0 0 chr9 100140723 100140761 -23935411 + AT_rich Low_complexity Low_complexity 1 38 0 2 1349 477 0 0 0 chr9 100140792 100140845 -23935327 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1349 360 103 0 0 chr9 100140848 100140906 -23935266 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1349 318 302 120 17 chr9 100141180 100141355 -23934817 + L1ME1 LINE L1 1270 1462 -5171 2 1349 2929 59 0 0 chr9 100141583 100141941 -23934231 - L1Md_F2 LINE L1 -339 6243 5886 2 1349 1265 102 0 41 chr9 100141941 100142136 -23934036 + L1Md_F2 LINE L1 6394 6580 -2 2 1349 290 308 40 40 chr9 100142138 100142287 -23933885 + L1ME1 LINE L1 5101 5249 -1288 2 1349 298 297 27 9 chr9 100142279 100142391 -23933781 + L1MEc LINE L1 659 772 -5630 2 1349 526 270 100 4 chr9 100142558 100142854 -23933318 + L1MEc LINE L1 1324 1641 -4867 2 1349 372 280 50 17 chr9 100143022 100143142 -23933030 + L1ME1 LINE L1 6043 6166 -389 2 1349 241 24 23 47 chr9 100143149 100143192 -23932980 + (TATAA)n Simple_repeat Simple_repeat 4 45 0 2 1349 1999 160 8 92 chr9 100143194 100143594 -23932578 - ORR1B1 LTR MaLR 0 394 29 2 1349 369 346 52 65 chr9 100143606 100143897 -23932275 + L1ME1 LINE L1 6199 6485 -85 2 1349 325 330 27 45 chr9 100144016 100144127 -23932045 + B4 SINE B4 65 173 -119 2 1349 1346 142 37 0 chr9 100144130 100144348 -23931824 + URR1A DNA MER1_type 1 226 0 2 1349 348 24 0 0 chr9 100144383 100144424 -23931748 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1349 310 280 262 19 chr9 100145144 100145304 -23930868 + L1MC5 LINE L1 7658 7856 -105 2 1349 2689 166 71 24 chr9 100145449 100145985 -23930187 + RLTR31_Mm LTR ERVK 1 561 0 2 1349 1175 270 94 26 chr9 100146328 100146678 -23929494 - MTD LTR MaLR -36 383 10 2 1349 247 250 48 77 chr9 100147608 100147712 -23928460 + L1M2 LINE L1 4124 4224 -1916 2 1349 218 250 14 29 chr9 100147714 100147784 -23928388 + (TATATG)n Simple_repeat Simple_repeat 1 69 0 2 1349 603 267 128 40 chr9 100147810 100148083 -23928089 + L1M2 LINE L1 4237 4533 -1610 2 1349 504 117 0 0 chr9 100148237 100148314 -23927858 + (TCC)n Simple_repeat Simple_repeat 3 79 0 2 1349 336 133 0 0 chr9 100148465 100148525 -23927647 + (A)n Simple_repeat Simple_repeat 1 60 0 2 1349 292 310 35 20 chr9 100150801 100150954 -23925218 + MIR SINE MIR 42 207 -61 2 1349 1592 246 35 27 chr9 100151401 100151777 -23924395 + MTEa LTR MaLR 1 379 0 2 1349 216 347 30 59 chr9 100152006 100152107 -23924065 + L2b LINE L2 3256 3353 -22 2 1349 211 271 21 0 chr9 100153537 100153585 -23922587 - L3 LINE CR1 -102 4387 4339 2 1349 380 224 0 0 chr9 100153966 100154033 -23922139 + PB1D7 SINE Alu 38 104 -16 2 1349 237 317 58 19 chr9 100154159 100154262 -23921910 + L1MC4 LINE L1 7787 7893 -149 2 1349 225 374 48 8 chr9 100154758 100154882 -23921290 - L3 LINE CR1 -2235 2254 2126 2 1349 386 304 27 55 chr9 100155223 100155369 -23920803 - MIR3 SINE MIR -57 151 10 2 1349 361 188 0 0 chr9 100155884 100155948 -23920224 - Lx9 LINE L1 -508 7136 7073 2 1349 329 189 14 0 chr9 100155949 100156023 -23920149 + Lx9 LINE L1 7568 7642 -2 2 1349 26 0 0 0 chr9 100156068 100156094 -23920078 + AT_rich Low_complexity Low_complexity 1 26 0 2 1349 328 200 21 0 chr9 100156450 100156545 -23919627 + CT-rich Low_complexity Low_complexity 3 99 0 2 1349 1662 225 17 28 chr9 100156545 100156897 -23919275 - Lx5 LINE L1 0 7050 6703 2 1349 311 266 25 50 chr9 100157530 100157649 -23918523 - PB1D10 SINE Alu -1 116 1 2 1349 304 224 204 0 chr9 100159209 100159307 -23916865 + PB1D9 SINE Alu 2 119 -1 2 1349 196 277 46 0 chr9 100159741 100159806 -23916366 - MIR3 SINE MIR -29 179 112 2 1349 387 0 0 0 chr9 100160618 100160661 -23915511 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1349 4456 60 19 4 chr9 100160797 100161337 -23914835 + L1Md_F2 LINE L1 6030 6577 -5 2 1349 282 74 0 53 chr9 100162243 100162300 -23913872 + (TCTCC)n Simple_repeat Simple_repeat 3 56 0 2 1349 635 258 0 23 chr9 100162405 100162536 -23913636 + RSINE1 SINE B4 1 128 -37 2 1349 240 86 0 0 chr9 100162551 100162586 -23913586 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1349 22 0 0 0 chr9 100162592 100162614 -23913558 + AT_rich Low_complexity Low_complexity 1 22 0 2 1349 300 398 0 0 chr9 100162632 100162735 -23913437 - MLT1K LTR MaLR -344 251 149 2 1349 520 333 86 11 chr9 100162871 100163138 -23913034 + RMER15 LTR ERVL 275 561 -14 2 1349 242 340 19 57 chr9 100163159 100163265 -23912907 - MLT1K LTR MaLR -446 149 48 2 1349 1355 234 127 160 chr9 100163967 100164635 -23911537 + RMER1B Other Other 421 1066 0 2 1349 36 62 0 0 chr9 100164707 100164771 -23911401 + AT_rich Low_complexity Low_complexity 1 64 0 2 1349 555 234 52 15 chr9 100164794 100164960 -23911212 + B3 SINE B2 2 216 0 2 1349 21 0 0 0 chr9 100165287 100165308 -23910864 + AT_rich Low_complexity Low_complexity 1 21 0 2 1349 201 301 58 115 chr9 100165605 100165744 -23910428 - L2b LINE L2 -10 3377 3243 2 1349 218 298 153 58 chr9 100165809 100166169 -23910003 - L2b LINE L2 -340 3079 2686 2 1349 192 258 81 61 chr9 100166213 100166312 -23909860 + MIRb SINE MIR 134 238 -30 2 1349 26 30 0 0 chr9 100166328 100166361 -23909811 + AT_rich Low_complexity Low_complexity 1 33 0 2 1349 184 150 16 32 chr9 100166434 100166496 -23909676 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 2 1349 314 233 24 36 chr9 100166514 100166679 -23909493 + (TTATA)n Simple_repeat Simple_repeat 2 164 0 2 1349 342 0 0 0 chr9 100168465 100168503 -23907669 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1349 788 84 0 8 chr9 100168503 100168634 -23907538 + (GA)n Simple_repeat Simple_repeat 1 131 0 2 1349 223 178 0 22 chr9 100168917 100168963 -23907209 + L2a LINE L2 3372 3416 -10 2 1349 271 312 31 20 chr9 100169405 100169503 -23906669 - MER5B DNA MER1_type -13 165 67 2 1349 479 279 8 0 chr9 100170222 100170351 -23905821 - B1F SINE Alu -19 130 1 2 1349 414 0 0 0 chr9 100170905 100170951 -23905221 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1349 214 215 0 25 chr9 100172686 100172767 -23903405 + GA-rich Low_complexity Low_complexity 1 79 0 2 1349 306 339 75 63 chr9 100174920 100175175 -23900997 - L1ME4a LINE L1 -228 5896 5639 2 1349 399 362 55 5 chr9 100176000 100176200 -23899972 - MIR SINE MIR -8 254 45 2 1349 1034 168 5 29 chr9 100176277 100176486 -23899686 + Lx LINE L1 6445 6648 -6 2 1349 573 262 140 33 chr9 100176708 100176980 -23899192 - MLT1A0 LTR MaLR -17 348 48 2 1349 323 274 66 46 chr9 100177124 100177262 -23898910 - MIRb SINE MIR -109 159 18 2 1349 726 12 0 0 chr9 100177359 100177442 -23898730 + (TTC)n Simple_repeat Simple_repeat 1 83 0 2 1349 234 0 0 0 chr9 100177584 100177610 -23898562 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1349 368 278 15 29 chr9 100177799 100177936 -23898236 - L3 LINE CR1 -2219 2270 2136 3 1349 190 364 50 34 chr9 100178018 100178197 -23897975 - MIRc SINE MIR -39 229 48 3 1349 240 122 0 0 chr9 100179684 100179725 -23896447 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1349 898 298 39 18 chr9 100180252 100180532 -23895640 - B4A SINE B4 -6 286 1 3 1349 1237 176 139 44 chr9 100180659 100180997 -23895175 + ORR1C1 LTR MaLR 1 370 -8 3 1349 1979 232 155 62 chr9 100181778 100182565 -23893607 + RMER13A LTR ERVK 1 860 0 3 1349 583 274 99 27 chr9 100182743 100183005 -23893167 - B4A SINE B4 -11 281 1 3 1349 667 168 14 0 chr9 100184097 100184240 -23891932 + GA-rich Low_complexity Low_complexity 2 146 0 3 1349 207 0 0 0 chr9 100184490 100184513 -23891659 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3 1349 1277 116 26 5 chr9 100184609 100184799 -23891373 - B2_Mm2 SINE B2 0 195 2 3 1349 974 261 121 11 chr9 100186877 100187233 -23888939 - L1ME2z LINE L1 -4 6440 6046 3 1349 399 21 0 0 chr9 100188229 100188277 -23887895 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1349 183 80 0 0 chr9 100188277 100188302 -23887870 + (GGA)n Simple_repeat Simple_repeat 3 27 0 3 1349 504 0 0 0 chr9 100188888 100188944 -23887228 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1349 227 138 33 33 chr9 100188972 100189032 -23887140 + A-rich Low_complexity Low_complexity 1 60 0 3 1349 312 224 92 0 chr9 100189055 100189131 -23887041 - Lx7 LINE L1 -384 7312 7230 3 1349 387 0 0 0 chr9 100190378 100190421 -23885751 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1349 582 301 66 0 chr9 100190421 100190741 -23885431 + L1ME2 LINE L1 5599 5938 -236 3 1349 287 328 17 0 chr9 100191490 100191609 -23884563 + L1M2 LINE L1 5668 5788 -512 3 1349 549 200 56 74 chr9 100191798 100191961 -23884211 - Lx9 LINE L1 -8 7636 7477 3 1349 594 28 0 0 chr9 100191961 100192033 -23884139 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 1349 549 200 56 74 chr9 100192033 100192085 -23884087 - Lx9 LINE L1 -168 7476 7425 3 1349 372 309 0 0 chr9 100193355 100193452 -23882720 - PB1D10 SINE Alu -19 98 2 3 1349 753 12 0 0 chr9 100193862 100193948 -23882224 + (GTTTG)n Simple_repeat Simple_repeat 1 86 0 3 1349 21 57 0 0 chr9 100197721 100197756 -23878416 + AT_rich Low_complexity Low_complexity 1 35 0 3 1349 21 0 0 0 chr9 100197779 100197800 -23878372 + AT_rich Low_complexity Low_complexity 1 21 0 3 1349 243 274 104 10 chr9 100198931 100199027 -23877145 - MER5A1 DNA MER1_type -37 129 25 3 1349 303 299 151 50 chr9 100199258 100199497 -23876675 + MLT1C LTR MaLR 201 463 -4 3 1349 405 115 0 0 chr9 100199634 100199712 -23876460 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 3 1349 234 62 0 0 chr9 100201287 100201319 -23874853 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1349 545 317 133 39 chr9 100202526 100203090 -23873082 + Charlie24 DNA MER1_type 286 902 -1548 3 1349 391 325 86 26 chr9 100203963 100204348 -23871824 + Charlie24 DNA MER1_type 2008 2415 -35 3 1349 423 0 0 0 chr9 100204810 100204857 -23871315 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1349 286 296 43 80 chr9 100205507 100205694 -23870478 - MIR SINE MIR 0 262 83 3 1349 237 360 104 35 chr9 100206731 100207097 -23869075 - L2c LINE L2 -80 3307 2917 3 1349 471 18 0 0 chr9 100208724 100208780 -23867392 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1349 411 253 160 0 chr9 100209494 100209644 -23866528 + MLT1D LTR MaLR 326 499 -6 3 1349 549 316 10 26 chr9 100209686 100209881 -23866291 + Lx8 LINE L1 6883 7074 -399 3 1349 302 215 151 0 chr9 100209885 100209978 -23866194 - MTD LTR MaLR 0 419 313 3 1349 1764 236 42 31 chr9 100210002 100210483 -23865689 + RMER19C LTR ERVK 126 611 0 3 1349 418 268 59 110 chr9 100210493 100210548 -23865624 - MTD LTR MaLR -110 309 238 3 1349 473 209 0 0 chr9 100210548 100210639 -23865533 + B1_Mus1 SINE Alu 1 91 -57 3 1349 418 268 59 110 chr9 100210639 100210808 -23865364 - MTD LTR MaLR -110 237 13 3 1349 4453 188 121 46 chr9 100210815 100211984 -23864188 - MTD-int LTR MaLR -2 1256 1 3 1349 756 208 42 56 chr9 100211984 100212198 -23863974 - MTD LTR MaLR -1 418 208 3 1349 793 267 137 22 chr9 100212201 100212515 -23863657 + Lx8 LINE L1 7124 7473 0 3 1349 1169 74 0 7 chr9 100212526 100212675 -23863497 + B1_Mus1 SINE Alu 1 148 0 3 1349 970 103 39 39 chr9 100212838 100213019 -23863153 + ORR1C2 LTR MaLR 2 182 -202 3 1349 640 229 0 0 chr9 100213863 100213985 -23862187 - MTD LTR MaLR -278 141 20 3 1349 186 67 21 43 chr9 100214815 100214862 -23861310 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 1349 2303 157 59 121 chr9 100215043 100215615 -23860557 - RMER19B LTR ERVK -365 537 1 3 1349 1750 159 329 40 chr9 100215957 100215999 -23860173 - MT2B2 LTR ERVL 0 584 544 3 1349 378 0 0 0 chr9 100215999 100216041 -23860131 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1349 1750 159 329 40 chr9 100216041 100216451 -23859721 - MT2B2 LTR ERVL -41 543 1 3 1349 544 258 15 29 chr9 100216963 100217099 -23859073 + MER45A DNA Tip100 1 134 -44 3 1349 928 134 206 23 chr9 100218232 100218407 -23857765 - B3 SINE B2 -8 208 2 3 1349 2150 115 31 11 chr9 100218552 100218905 -23857267 + ORR1C1 LTR MaLR 1 360 -18 3 1349 457 76 25 0 chr9 100220432 100220511 -23855661 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1349 288 0 0 0 chr9 100220665 100220697 -23855475 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1349 254 228 241 0 chr9 100223386 100223465 -23852707 + HAL1 LINE L1 2107 2204 -303 3 1349 2208 153 23 11 chr9 100223487 100224022 -23852150 - RLTR17 LTR ERVK -8 684 98 3 1349 680 282 19 3 chr9 100224849 100225044 -23851128 + B3A SINE B2 1 201 -15 3 1349 33 43 0 0 chr9 100225263 100225310 -23850862 + AT_rich Low_complexity Low_complexity 1 47 0 3 1349 183 80 0 0 chr9 100225407 100225432 -23850740 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1349 21 36 0 0 chr9 100225585 100225613 -23850559 + AT_rich Low_complexity Low_complexity 1 28 0 3 1349 200 250 0 0 chr9 100225867 100225907 -23850265 + T-rich Low_complexity Low_complexity 1 40 0 3 1349 842 245 62 5 chr9 100226674 100226867 -23849305 + B3 SINE B2 2 205 -11 3 1349 195 281 17 17 chr9 100227775 100227833 -23848339 - MIRm SINE MIR -120 156 99 3 1349 684 264 89 127 chr9 100228324 100228626 -23847546 + L1MC LINE L1 5302 5584 -760 3 1349 351 212 0 101 chr9 100228626 100228715 -23847457 - ID4 SINE ID -2 81 2 3 1349 667 264 89 127 chr9 100228715 100228807 -23847365 + L1MC LINE L1 5585 5681 -663 3 1349 286 226 16 0 chr9 100228862 100228924 -23847248 + MTEa LTR MaLR 3 65 -314 3 1349 249 282 12 25 chr9 100228924 100228942 -23847230 + MT2A LTR ERVL 3 81 -452 3 1349 39 38 0 0 chr9 100229019 100229072 -23847100 + AT_rich Low_complexity Low_complexity 1 53 0 3 1349 1298 99 17 0 chr9 100229492 100229673 -23846499 - B2_Mm1t SINE B2 -8 185 2 3 1349 912 83 129 37 chr9 100230120 100230283 -23845889 + B2_Mm2 SINE B2 8 185 -10 3 1349 188 111 28 0 chr9 100230283 100230319 -23845853 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1349 5488 52 0 10 chr9 100230359 100231034 -23845138 + L1Md_F2 LINE L1 5894 6561 -21 3 1349 671 0 13 0 chr9 100231034 100231113 -23845059 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 3 1349 243 356 113 22 chr9 100232200 100232562 -23843610 + L1M5 LINE L1 2315 2709 -3437 3 1349 249 309 93 53 chr9 100233099 100233400 -23842772 - MER97c DNA MER1_type? -6 1084 772 3 1349 991 39 0 0 chr9 100233554 100233684 -23842488 - B1_Mus2 SINE Alu 0 147 18 3 1349 381 289 99 23 chr9 100234115 100234246 -23841926 + RSINE1 SINE B4 3 143 -22 3 1349 270 115 0 0 chr9 100234248 100234300 -23841872 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1349 2619 294 49 48 chr9 100234338 100235952 -23840220 + Lx8 LINE L1 5514 7244 -229 3 1349 303 161 0 0 chr9 100235960 100236016 -23840156 + CT-rich Low_complexity Low_complexity 3 58 0 3 1349 234 0 0 0 chr9 100236092 100236118 -23840054 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1349 378 0 0 0 chr9 100236118 100236159 -23840013 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1349 1081 110 102 23 chr9 100236278 100236455 -23839717 + B2_Mm2 SINE B2 2 192 -3 3 1349 375 23 0 0 chr9 100237004 100237048 -23839124 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 3 1349 387 267 88 14 chr9 100237083 100237231 -23838941 - MamRep605 Unknown Unknown -701 175 17 3 1349 216 274 128 28 chr9 100237378 100237487 -23838685 - MIR SINE MIR -94 168 49 3 1349 435 255 9 9 chr9 100239681 100239792 -23836380 + PB1D9 SINE Alu 2 112 -8 3 1349 675 0 0 0 chr9 100241042 100241117 -23835055 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 3 1349 270 278 0 0 chr9 100241754 100241862 -23834310 + (TG)n Simple_repeat Simple_repeat 1 108 0 3 1349 372 283 50 0 chr9 100241892 100241991 -23834181 - B4A SINE B4 -12 280 177 3 1349 273 359 33 52 chr9 100242315 100242468 -23833704 + MLT1H2 LTR MaLR 1 150 -339 3 1349 342 0 0 0 chr9 100242770 100242808 -23833364 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1349 1227 286 73 79 chr9 100243328 100244218 -23831954 - L1MA4 LINE L1 -371 5929 5043 3 1349 204 125 0 0 chr9 100244218 100244250 -23831922 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 3 1349 246 182 0 0 chr9 100244294 100244360 -23831812 + (TTGG)n Simple_repeat Simple_repeat 4 69 0 3 1349 354 310 0 0 chr9 100244362 100244462 -23831710 - ID_B1 SINE B4 -35 189 90 3 1349 1453 302 148 40 chr9 100244481 100244781 -23831391 - L1MA4 LINE L1 -854 5026 4749 3 1349 2606 86 0 0 chr9 100244781 100245108 -23831064 - ORR1A2 LTR MaLR 0 327 1 3 1349 9800 145 49 8 chr9 100245108 100246830 -23829342 - ORR1A2-int LTR MaLR 0 1792 1 3 1349 2490 75 22 0 chr9 100246830 100247150 -23829022 - ORR1A2 LTR MaLR 0 327 1 3 1349 1453 302 148 40 chr9 100247150 100247904 -23828268 - L1MA4 LINE L1 -1132 4748 3857 3 1349 910 234 241 13 chr9 100247906 100248205 -23827967 - MTE2b LTR MaLR -10 369 3 3 1349 535 255 49 67 chr9 100248333 100248785 -23827387 - L1M2 LINE L1 -3006 3839 3510 3 1349 201 39 0 0 chr9 100248789 100248815 -23827357 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1349 294 259 82 0 chr9 100248822 100248907 -23827265 - MTD LTR MaLR -51 368 277 3 1349 1037 335 54 87 chr9 100248962 100249419 -23826753 - L1_Rod LINE L1 -3299 2548 2076 3 1349 368 269 11 0 chr9 100249419 100249512 -23826660 - 5S rRNA rRNA -26 95 2 3 1349 1037 335 54 87 chr9 100249512 100250333 -23825839 - L1_Rod LINE L1 -3299 2075 1223 3 1349 522 340 5 67 chr9 100250408 100250616 -23825556 - B3A SINE B2 -3 195 1 4 1349 276 314 45 0 chr9 100250620 100250776 -23825396 - L1M2 LINE L1 -5049 1800 1638 3 1349 500 74 27 36 chr9 100251114 100251226 -23824946 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 1349 2800 30 36 9 chr9 100251614 100251951 -23824221 + ORR1A1 LTR MaLR 1 346 0 4 1349 806 298 22 9 chr9 100252244 100252471 -23823701 + B4A SINE B4 1 230 -62 4 1349 596 211 106 66 chr9 100252471 100252669 -23823503 + Lx8 LINE L1 7265 7470 -3 4 1349 291 275 0 68 chr9 100252695 100252769 -23823403 + B4A SINE B4 218 286 -6 4 1349 232 214 0 51 chr9 100252775 100252834 -23823338 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 4 1349 474 18 0 0 chr9 100253049 100253104 -23823068 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1349 3339 41 5 2 chr9 100253689 100254084 -23822088 + MTA_Mm LTR MaLR 1 396 0 4 1349 999 252 82 90 chr9 100254397 100254986 -23821186 + HAL1b LINE L1 1243 1826 -183 4 1349 647 336 10 98 chr9 100255027 100255334 -23820838 + B4 SINE B4 13 292 0 4 1349 329 319 95 33 chr9 100255550 100255761 -23820411 + MLT1H LTR MaLR 237 460 -89 4 1349 241 331 71 45 chr9 100255765 100255830 -23820342 - MLT2B3 LTR ERVL -380 174 18 4 1349 252 267 0 148 chr9 100255830 100255918 -23820254 - MTEb LTR MaLR -287 92 18 4 1349 339 283 47 62 chr9 100256372 100256500 -23819672 - MLT1H2 LTR MaLR -290 199 74 4 1349 865 245 10 15 chr9 100257304 100257507 -23818665 + B3 SINE B2 15 216 0 4 1349 228 163 0 0 chr9 100259201 100259244 -23816928 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1349 209 103 24 49 chr9 100260387 100260428 -23815744 + T-rich Low_complexity Low_complexity 3 42 0 4 1349 1323 118 113 0 chr9 100260591 100260794 -23815378 - URR1A DNA MER1_type 0 226 1 4 1349 379 176 0 14 chr9 100261057 100261126 -23815046 - ID_B1 SINE B4 -12 212 145 4 1349 397 132 0 14 chr9 100261460 100261529 -23814643 + ORR1E LTR MaLR 25 92 -267 4 1349 44 0 0 0 chr9 100261595 100261639 -23814533 + AT_rich Low_complexity Low_complexity 1 44 0 4 1349 21 0 0 31 chr9 100261729 100261744 -23814428 + AT_rich Low_complexity Low_complexity 1 15 0 4 1349 5045 39 0 0 chr9 100261744 100262329 -23813843 - L1Md_F2 LINE L1 -12 6570 5986 4 1349 21 0 0 31 chr9 100262329 100262345 -23813827 + AT_rich Low_complexity Low_complexity 1 16 0 4 1349 1158 122 0 0 chr9 100262391 100262806 -23813366 + (TA)n Simple_repeat Simple_repeat 1 415 0 4 1349 369 62 0 0 chr9 100263037 100263085 -23813087 + B3 SINE B2 3 50 -166 4 1349 619 209 23 8 chr9 100263238 100263368 -23812804 - RSINE1 SINE B4 -31 134 3 4 1349 284 314 66 0 chr9 100263581 100263702 -23812470 - L1M4 LINE L1 -1221 4925 4797 4 1349 21 36 0 0 chr9 100263827 100263855 -23812317 + AT_rich Low_complexity Low_complexity 1 28 0 4 1349 333 255 160 0 chr9 100263878 100263972 -23812200 + ID_B1 SINE B4 110 218 -6 4 1349 342 45 0 0 chr9 100264195 100264239 -23811933 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1349 505 200 5 165 chr9 100264368 100264534 -23811638 - B1F SINE Alu 0 149 10 4 1349 185 147 0 0 chr9 100265703 100265737 -23810435 + L2a LINE L2 3122 3155 -271 4 1349 505 105 23 0 chr9 100265811 100265897 -23810275 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 1349 381 317 3 0 chr9 100266011 100266298 -23809874 + (TG)n Simple_repeat Simple_repeat 1 288 0 4 1349 792 215 14 114 chr9 100266302 100266512 -23809660 - RMER30 DNA MER1_type -7 195 7 4 1349 289 305 39 8 chr9 100266555 100266684 -23809488 - L2a LINE L2 -82 3344 3212 4 1349 204 162 56 56 chr9 100266701 100266773 -23809399 - L2a LINE L2 -283 3143 3072 4 1349 23 78 0 0 chr9 100268148 100268199 -23807973 + AT_rich Low_complexity Low_complexity 1 51 0 4 1349 4119 82 34 2 chr9 100268524 100269087 -23807085 + L1_Mus3 LINE L1 6056 6636 -2 4 1349 324 0 0 0 chr9 100269315 100269351 -23806821 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1349 297 0 0 0 chr9 100269351 100269383 -23806789 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1349 306 0 0 0 chr9 100269504 100269538 -23806634 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1349 673 43 0 32 chr9 100269538 100269625 -23806547 - B1_Mus2 SINE Alu -6 141 55 4 1349 255 281 31 0 chr9 100269798 100269862 -23806310 + ID4 SINE ID 4 69 -14 4 1350 450 36 0 0 chr9 100270143 100270199 -23805973 + (GGGGA)n Simple_repeat Simple_repeat 4 59 0 4 1350 864 100 25 12 chr9 100270214 100270376 -23805796 + (GAGAA)n Simple_repeat Simple_repeat 1 164 0 4 1350 24 0 0 0 chr9 100270915 100270939 -23805233 + AT_rich Low_complexity Low_complexity 1 24 0 4 1350 352 157 143 0 chr9 100271513 100271583 -23804589 + RLTR20D LTR ERVK 136 215 -353 4 1350 227 143 0 0 chr9 100271584 100271619 -23804553 + MTC LTR MaLR 387 421 0 4 1350 234 235 20 0 chr9 100271677 100271728 -23804444 + RMER15 LTR ERVL 9 60 -515 4 1350 571 168 8 25 chr9 100271796 100271918 -23804254 + B1_Mus2 SINE Alu 28 147 0 4 1350 934 110 6 94 chr9 100271927 100272098 -23804074 + MT2B LTR ERVL 132 287 -314 4 1350 4453 161 119 63 chr9 100272057 100273237 -23802935 + ORR1A4-int LTR MaLR 718 1963 0 4 1350 1858 122 16 29 chr9 100273237 100273550 -23802622 + ORR1A4 LTR MaLR 1 309 -20 4 1350 261 253 121 0 chr9 100273560 100273643 -23802529 + RMER15 LTR ERVL 481 573 -2 4 1350 22 0 0 0 chr9 100273774 100273796 -23802376 + AT_rich Low_complexity Low_complexity 1 22 0 4 1350 729 303 0 6 chr9 100274034 100274210 -23801962 - B3A SINE B2 -21 177 3 4 1350 309 321 113 43 chr9 100275183 100275528 -23800644 + HAL1 LINE L1 106 474 -2033 4 1350 297 0 0 0 chr9 100276144 100276177 -23799995 + (TTGG)n Simple_repeat Simple_repeat 1 33 0 4 1350 415 328 80 16 chr9 100276474 100276725 -23799447 + HAL1 LINE L1 1517 1783 -724 4 1350 369 0 0 0 chr9 100277136 100277177 -23798995 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 1350 189 154 0 0 chr9 100279204 100279243 -23796929 + A-rich Low_complexity Low_complexity 1 39 0 4 1350 1001 322 26 0 chr9 100279551 100279855 -23796317 + Lx8 LINE L1 7016 7327 -146 4 1350 1150 175 61 9 chr9 100280049 100280262 -23795910 - URR1B DNA MER1_type -1 224 1 4 1350 270 286 16 40 chr9 100280859 100280983 -23795189 + Lx8 LINE L1 7349 7469 -4 4 1350 303 319 11 0 chr9 100281006 100281100 -23795072 - Kanga1d DNA Tc2 -355 254 160 4 1350 25 0 0 0 chr9 100281265 100281290 -23794882 + AT_rich Low_complexity Low_complexity 1 25 0 4 1350 676 123 111 37 chr9 100281524 100281659 -23794513 - B1_Mur3 SINE Alu 0 149 5 4 1350 495 148 139 0 chr9 100281676 100281784 -23794388 - ORR1B2 LTR MaLR -81 286 164 4 1350 267 308 128 49 chr9 100281814 100281978 -23794194 - Charlie2a DNA MER1_type -2682 179 3 4 1350 643 69 38 15 chr9 100283192 100283324 -23792848 + (TTTTTG)n Simple_repeat Simple_repeat 2 136 0 4 1350 438 359 105 18 chr9 100283820 100284211 -23791961 + MER20B DNA MER1_type 88 512 -271 4 1350 23 68 0 0 chr9 100284484 100284528 -23791644 + AT_rich Low_complexity Low_complexity 1 44 0 4 1350 393 316 50 25 chr9 100284674 100284699 -23791473 - RSINE1 SINE B4 0 165 141 4 1350 180 0 0 0 chr9 100284699 100284719 -23791453 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1350 393 316 50 25 chr9 100284719 100284852 -23791320 - RSINE1 SINE B4 -25 140 4 4 1350 504 48 0 0 chr9 100285530 100285593 -23790579 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 4 1350 1018 231 108 44 chr9 100285598 100285744 -23790428 - Lx7 LINE L1 -4 7692 7551 4 1350 207 0 0 0 chr9 100285744 100285767 -23790405 + (ATG)n Simple_repeat Simple_repeat 2 24 0 4 1350 1018 231 108 44 chr9 100285767 100285934 -23790238 - Lx7 LINE L1 -146 7550 7349 4 1350 1205 39 13 0 chr9 100285934 100286088 -23790084 + (GGAA)n Simple_repeat Simple_repeat 3 158 0 4 1350 1018 231 108 44 chr9 100286088 100286162 -23790010 - Lx7 LINE L1 -348 7348 7280 4 1350 317 289 142 7 chr9 100289499 100289672 -23786500 + MIR SINE MIR 49 241 -21 4 1350 194 130 80 80 chr9 100290018 100290068 -23786104 - MIR SINE MIR -123 139 90 4 1350 589 110 0 0 chr9 100290235 100290326 -23785846 - ORR1B2 LTR MaLR 0 367 277 4 1350 708 108 8 8 chr9 100290318 100290440 -23785732 - RMER19C LTR ERVK -489 122 1 4 1350 222 205 0 0 chr9 100290473 100290512 -23785660 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1350 423 0 0 0 chr9 100290527 100290574 -23785598 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 4 1350 339 85 0 0 chr9 100290602 100290649 -23785523 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1350 207 0 0 0 chr9 100291358 100291381 -23784791 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1350 198 0 0 0 chr9 100292468 100292490 -23783682 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1350 2162 121 42 8 chr9 100292579 100292980 -23783192 - BGLII LTR ERVK -6 415 1 4 1350 315 290 36 36 chr9 100293109 100293220 -23782952 + PB1D10 SINE Alu 1 111 -6 4 1350 631 248 61 53 chr9 100293256 100293503 -23782669 + L1M5 LINE L1 5349 5597 -567 4 1350 889 270 13 72 chr9 100293582 100293889 -23782283 + B4 SINE B4 4 292 0 4 1350 24 32 0 0 chr9 100294034 100294065 -23782107 + AT_rich Low_complexity Low_complexity 1 31 0 4 1350 905 286 17 20 chr9 100294086 100294379 -23781793 + B4A SINE B4 1 292 0 4 1350 301 282 0 0 chr9 100294759 100294844 -23781328 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1350 207 0 0 0 chr9 100295098 100295121 -23781051 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1350 650 186 12 20 chr9 100295378 100295625 -23780547 + C-rich Low_complexity Low_complexity 1 244 0 4 1350 375 23 0 0 chr9 100295625 100295669 -23780503 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1350 192 329 52 14 chr9 100296814 100296978 -23779194 - MIRb SINE MIR -95 167 3 4 1350 1242 98 40 0 chr9 100298627 100298801 -23777371 + B2_Mm2 SINE B2 1 181 -14 4 1350 316 195 35 47 chr9 100301166 100301252 -23774920 + ID SINE ID 1 85 -139 4 1350 252 0 0 0 chr9 100301430 100301458 -23774714 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1350 882 150 0 0 chr9 100301793 100301926 -23774246 + B1_Mus1 SINE Alu 3 135 -13 4 1350 207 0 0 0 chr9 100301929 100301952 -23774220 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1350 216 67 0 0 chr9 100302251 100302281 -23773891 + (GGTTG)n Simple_repeat Simple_repeat 2 31 0 5 1350 288 0 0 0 chr9 100302333 100302365 -23773807 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 5 1350 257 51 0 25 chr9 100302367 100302407 -23773765 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 5 1350 475 198 18 36 chr9 100302408 100302518 -23773654 - PB1D9 SINE Alu -2 118 11 5 1350 261 214 55 41 chr9 100302465 100302538 -23773634 - B4 SINE B4 -142 150 77 5 1350 563 289 13 19 chr9 100303033 100303188 -23772984 - Lx8 LINE L1 -380 7093 6940 5 1350 361 328 69 0 chr9 100303216 100303390 -23772782 + L1MC1 LINE L1 6125 6310 -23 5 1350 1061 221 86 31 chr9 100303400 100303867 -23772305 + L1MDa LINE L1 2411 2898 -3639 5 1350 485 345 62 14 chr9 100303867 100304076 -23772096 + B4A SINE B4 2 220 -72 5 1350 1158 192 5 5 chr9 100304087 100304302 -23771870 + B3 SINE B2 2 216 0 5 1350 252 0 0 0 chr9 100304404 100304432 -23771740 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 5 1350 594 252 60 12 chr9 100304443 100304529 -23771643 + L1MDa LINE L1 2904 2990 -3547 5 1350 1358 91 16 0 chr9 100304529 100304715 -23771457 + B2_Mm2 SINE B2 1 189 -6 5 1350 594 252 60 12 chr9 100304715 100304877 -23771295 + L1MDa LINE L1 2991 3163 -3374 5 1350 505 269 58 29 chr9 100305476 100305614 -23770558 + RSINE1 SINE B4 4 145 -20 5 1350 333 118 0 0 chr9 100305618 100305669 -23770503 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1350 2093 266 78 17 chr9 100305673 100306613 -23769559 + L1MDa LINE L1 3152 4148 -2389 5 1350 558 0 0 0 chr9 100307432 100307494 -23768678 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1350 255 371 73 19 chr9 100307753 100307959 -23768213 + MLT1K LTR MaLR 370 586 -9 5 1350 713 193 15 0 chr9 100308057 100308192 -23767980 - MTC LTR MaLR -15 404 268 5 1350 1381 191 43 20 chr9 100308241 100308541 -23767631 - MTC LTR MaLR -114 307 1 5 1350 319 120 0 0 chr9 100308552 100308602 -23767570 + MERVL_2A-int LTR ERVL 4556 4605 -1156 5 1350 622 273 92 32 chr9 100308603 100308853 -23767319 - MTD LTR MaLR -149 270 6 5 1350 908 250 48 37 chr9 100308905 100309175 -23766997 + B4 SINE B4 2 274 -18 5 1350 503 291 81 0 chr9 100309176 100309348 -23766824 + MER90a LTR ERV1 27 212 -402 5 1350 561 93 12 0 chr9 100309703 100309789 -23766383 - ORR1D1 LTR MaLR -282 92 6 5 1350 207 307 11 33 chr9 100309919 100310010 -23766162 + MIRc SINE MIR 63 151 -117 5 1350 306 297 31 71 chr9 100310196 100310323 -23765849 - MamRep434 DNA TcMar -164 262 141 5 1350 341 130 14 0 chr9 100310712 100310781 -23765391 + L1Md_F2 LINE L1 6513 6582 0 5 1350 4080 46 18 8 chr9 100310945 100311451 -23764721 + L1Md_F2 LINE L1 6065 6575 -7 5 1350 1683 195 78 8 chr9 100311640 100312023 -23764149 + MTC LTR MaLR 4 413 -8 5 1350 220 242 0 16 chr9 100312910 100312973 -23763199 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1350 223 222 25 0 chr9 100313092 100313173 -23762999 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1350 342 357 7 21 chr9 100313999 100314142 -23762030 - MER5A DNA MER1_type -7 182 42 5 1350 277 276 89 53 chr9 100314150 100314370 -23761802 + MIR SINE MIR 1 229 -33 5 1350 216 97 0 0 chr9 100314385 100314416 -23761756 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1350 187 100 0 91 chr9 100317660 100317726 -23758446 + C-rich Low_complexity Low_complexity 1 60 0 5 1350 531 0 0 0 chr9 100317863 100317922 -23758250 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1350 221 373 29 22 chr9 100317972 100318109 -23758063 + L2c LINE L2 2327 2464 -955 5 1350 549 324 65 85 chr9 100318156 100318351 -23757821 + MLT1B LTR MaLR 1 205 -185 5 1350 832 147 7 34 chr9 100318351 100318499 -23757673 + B1_Mus2 SINE Alu 3 146 -1 5 1350 549 324 65 85 chr9 100318499 100318522 -23757650 + MLT1B LTR MaLR 206 222 -168 5 1350 913 74 15 0 chr9 100318522 100318657 -23757515 + (GGGA)n Simple_repeat Simple_repeat 4 140 0 5 1350 549 324 65 85 chr9 100318657 100318835 -23757337 + MLT1B LTR MaLR 223 390 0 5 1350 181 320 100 33 chr9 100319572 100319782 -23756390 + L2c LINE L2 2922 3145 -242 5 1350 21 0 0 0 chr9 100320534 100320555 -23755617 + GC_rich Low_complexity Low_complexity 1 21 0 5 1350 1210 61 0 0 chr9 100320842 100320990 -23755182 + B1_Mus1 SINE Alu 1 148 0 5 1350 273 119 0 0 chr9 100321251 100321293 -23754879 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1350 294 29 0 0 chr9 100321395 100321430 -23754742 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 5 1350 444 211 128 0 chr9 100322032 100322141 -23754031 + B1F SINE Alu 21 143 -6 5 1350 556 272 189 42 chr9 100322155 100322393 -23753779 + B4A SINE B4 4 276 -16 5 1350 398 197 118 83 chr9 100322496 100322640 -23753532 - B4 SINE B4 0 292 144 5 1350 282 301 10 10 chr9 100322926 100323030 -23753142 - L1MA8 LINE L1 -32 6259 6156 5 1350 585 241 14 28 chr9 100323130 100323275 -23752897 - B1_Mur1 SINE Alu -1 148 6 5 1350 697 201 0 22 chr9 100323541 100323724 -23752448 + (CATA)n Simple_repeat Simple_repeat 1 179 0 5 1350 571 179 12 38 chr9 100323750 100324188 -23751984 + (CATA)n Simple_repeat Simple_repeat 1 426 0 5 1350 435 289 124 32 chr9 100324458 100324708 -23751464 - B4A SINE B4 -3 289 17 5 1350 351 0 0 0 chr9 100324711 100324750 -23751422 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1350 567 0 0 0 chr9 100324750 100324812 -23751360 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1350 309 256 79 86 chr9 100325401 100325655 -23750517 - MLT1C LTR MaLR -125 342 91 5 1350 497 277 35 0 chr9 100325672 100325813 -23750359 + RSINE1 SINE B4 5 150 -15 5 1350 1173 95 0 6 chr9 100326697 100326867 -23749305 + B2_Mm2 SINE B2 1 169 -26 5 1350 1128 103 0 0 chr9 100326869 100327034 -23749138 + (GAA)n Simple_repeat Simple_repeat 1 165 0 5 1350 340 197 0 14 chr9 100327216 100327288 -23748884 + L1MD2 LINE L1 97 167 -6380 5 1350 650 142 0 9 chr9 100327417 100327531 -23748641 - B1_Mus1 SINE Alu 0 148 36 5 1350 245 250 0 15 chr9 100327475 100327540 -23748632 - 4.5SRNA scRNA scRNA -8 86 23 5 1350 392 318 39 19 chr9 100327639 100327793 -23748379 + L1MD2 LINE L1 535 691 -5856 5 1350 327 294 20 0 chr9 100328938 100329040 -23747132 - L1M5 LINE L1 -457 5667 5564 5 1350 27 49 0 0 chr9 100329098 100329139 -23747033 + AT_rich Low_complexity Low_complexity 1 41 0 5 1350 451 313 32 100 chr9 100329264 100329327 -23746845 - B4 SINE B4 -3 289 115 5 1350 642 152 20 68 chr9 100329327 100329475 -23746697 - B1_Mur1 SINE Alu 0 149 9 5 1350 1067 197 10 0 chr9 100329485 100329683 -23746489 + B3 SINE B2 7 206 -10 5 1350 441 270 88 73 chr9 100329706 100329904 -23746268 - B3A SINE B2 -17 199 2 5 1350 604 251 163 15 chr9 100329904 100330104 -23746068 - B4 SINE B4 -62 230 1 5 1350 444 173 456 8 chr9 100330536 100330685 -23745487 - B3 SINE B2 0 216 2 5 1350 244 167 37 0 chr9 100330982 100331036 -23745136 + L1MD2 LINE L1 6302 6357 -2 5 1350 384 22 0 0 chr9 100331338 100331383 -23744789 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1350 1385 183 177 17 chr9 100332048 100332111 -23744061 - MTD LTR MaLR -1 418 358 5 1350 2998 115 44 2 chr9 100332111 100332539 -23743633 + RLTR41 LTR ERV1 1 446 0 5 1350 1385 183 177 17 chr9 100332539 100332831 -23743341 - MTD LTR MaLR -62 357 6 5 1350 333 0 0 0 chr9 100332967 100333004 -23743168 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1350 198 0 0 0 chr9 100333022 100333044 -23743128 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 1350 432 0 0 0 chr9 100333044 100333091 -23743081 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1350 850 181 10 68 chr9 100333099 100333306 -23742866 + RMER13B LTR ERVK 533 727 -181 5 1350 770 248 20 67 chr9 100333282 100333537 -23742635 + RMER13B LTR ERVK 662 904 -4 5 1350 2632 179 25 19 chr9 100333915 100334433 -23741739 + RLTR28 LTR ERVL 4 524 0 5 1350 3424 30 5 2 chr9 100334590 100334985 -23741187 + MTA_Mm LTR MaLR 1 396 0 5 1350 825 259 137 16 chr9 100335027 100335341 -23740831 - MLT1B LTR MaLR 0 390 39 5 1350 218 240 0 19 chr9 100335367 100335425 -23740747 + MIR SINE MIR 178 238 -30 5 1350 758 226 0 99 chr9 100336571 100336743 -23739429 - RSINE1 SINE B4 0 165 11 5 1350 291 93 0 0 chr9 100336754 100336797 -23739375 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1350 598 173 39 16 chr9 100336807 100336936 -23739236 - RCHARR1 DNA MER1_type -58 916 785 5 1350 1547 38 0 21 chr9 100336936 100337124 -23739048 + B2_Mm2 SINE B2 2 185 -10 5 1350 1056 312 72 33 chr9 100337216 100337607 -23738565 - RCHARR1 DNA MER1_type -505 469 64 5 1350 693 199 148 11 chr9 100337681 100337864 -23738308 + MTC LTR MaLR 1 208 -213 5 1350 1615 52 0 5 chr9 100338907 100339100 -23737072 - B2_Mm2 SINE B2 -2 193 2 5 1350 672 248 0 8 chr9 100339113 100339239 -23736933 + B1_Mus1 SINE Alu 1 125 -23 5 1350 420 111 0 0 chr9 100339239 100339302 -23736870 + (TAAG)n Simple_repeat Simple_repeat 2 64 0 5 1350 243 333 0 0 chr9 100340944 100341010 -23735162 + ID4 SINE ID 2 67 -16 5 1350 718 217 35 0 chr9 100341443 100341586 -23734586 - B1_Mur1 SINE Alu 0 149 2 5 1350 646 291 0 46 chr9 100341702 100341875 -23734297 + RSINE1 SINE B4 1 165 0 5 1350 3547 52 2 9 chr9 100341904 100342355 -23733817 + L1Md_F2 LINE L1 6135 6582 0 5 1350 3547 52 2 9 chr9 100342355 100342378 -23733794 + L1Md_F2 LINE L1 6561 6580 -2 5 1350 323 171 156 13 chr9 100342602 100342679 -23733493 + 5S rRNA rRNA 8 95 -26 5 1350 414 0 0 0 chr9 100345423 100345469 -23730703 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1350 765 0 0 0 chr9 100345741 100345826 -23730346 + (TCTCC)n Simple_repeat Simple_repeat 2 86 0 5 1350 189 107 0 0 chr9 100345875 100345903 -23730269 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1350 917 273 48 19 chr9 100345908 100346177 -23729995 - RMER15 LTR ERVL -2 573 297 5 1350 473 264 9 0 chr9 100347380 100347490 -23728682 + PB1D7 SINE Alu 1 111 -9 5 1350 549 0 0 0 chr9 100347495 100347556 -23728616 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1350 456 232 31 10 chr9 100347564 100347660 -23728512 + PB1D7 SINE Alu 2 99 -21 5 1350 737 22 11 0 chr9 100347708 100347799 -23728373 + (GAGAA)n Simple_repeat Simple_repeat 3 94 0 5 1350 457 228 146 0 chr9 100348011 100348183 -23727989 - B4 SINE B4 -43 249 41 5 1350 209 256 0 0 chr9 100348243 100348286 -23727886 + G-rich Low_complexity Low_complexity 4 46 0 6 1350 1082 157 4 139 chr9 100348755 100348999 -23727173 + B3 SINE B2 1 211 -5 6 1350 402 295 18 9 chr9 100349204 100349317 -23726855 - MIRc SINE MIR -104 164 51 6 1350 301 295 116 65 chr9 100349742 100349880 -23726292 - L1M4b LINE L1 -5392 1942 1798 6 1350 457 316 91 10 chr9 100350301 100350499 -23725673 - MER45B DNA Tip100 -102 938 725 6 1350 500 218 0 0 chr9 100350501 100350588 -23725584 - RSINE1 SINE B4 -1 164 78 6 1350 285 294 39 31 chr9 100351273 100351403 -23724769 - Arthur1 DNA Tip100 -9 3938 3808 6 1350 298 361 87 10 chr9 100351454 100351650 -23724522 - Arthur1 DNA Tip100 -270 3677 3467 6 1350 495 0 0 0 chr9 100351669 100351724 -23724448 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1350 2086 230 19 19 chr9 100351867 100352341 -23723831 + RMER19C LTR ERVK 138 611 0 6 1350 650 326 22 22 chr9 100352341 100352571 -23723601 - B4A SINE B4 -59 233 4 6 1350 432 0 0 0 chr9 100352619 100352667 -23723505 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1350 299 25 0 24 chr9 100353605 100353646 -23722526 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1350 225 0 0 0 chr9 100353695 100353720 -23722452 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1350 1104 69 13 46 chr9 100353727 100353879 -23722293 - B1_Mus1 SINE Alu 0 148 2 6 1350 215 0 0 62 chr9 100355384 100355416 -23720756 + (CAGAGA)n Simple_repeat Simple_repeat 1 30 0 6 1350 468 0 0 0 chr9 100355505 100355557 -23720615 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1350 425 76 15 0 chr9 100356072 100356138 -23720034 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1350 270 273 50 57 chr9 100356139 100356279 -23719893 - RSINE1 SINE B4 -21 144 6 6 1350 239 294 102 72 chr9 100356386 100356650 -23719522 - L1MC4 LINE L1 -1046 6996 6725 6 1350 1839 173 99 43 chr9 100356800 100357174 -23718998 - MTC LTR MaLR -8 413 19 6 1350 279 157 0 19 chr9 100357174 100357226 -23718946 - MTC LTR MaLR -368 53 3 6 1350 372 260 39 31 chr9 100357781 100357908 -23718264 - MTD LTR MaLR -281 138 11 6 1350 191 339 112 29 chr9 100359229 100359399 -23716773 - MIR3 SINE MIR -22 186 3 6 1350 299 242 0 10 chr9 100359785 100359885 -23716287 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 1350 398 317 111 50 chr9 100360058 100360199 -23715973 + L1M5 LINE L1 2320 2481 -3665 6 1350 1068 117 0 0 chr9 100360199 100360344 -23715828 + B1_Mus2 SINE Alu 3 147 0 6 1350 398 317 111 50 chr9 100360344 100360464 -23715708 + L1M5 LINE L1 2482 2597 -3549 6 1350 231 61 0 0 chr9 100360800 100360833 -23715339 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1350 400 303 178 41 chr9 100361357 100361677 -23714495 + MLT1A0 LTR MaLR 2 365 0 6 1350 320 308 39 46 chr9 100362778 100362931 -23713241 + L1M5 LINE L1 5553 5704 -420 6 1350 546 16 0 0 chr9 100363007 100363070 -23713102 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1350 757 206 20 0 chr9 100363433 100363579 -23712593 + B1_Mur2 SINE Alu 1 149 0 6 1350 511 119 20 0 chr9 100363610 100363671 -23712501 + (GA)n Simple_repeat Simple_repeat 1 61 0 6 1350 1078 108 0 17 chr9 100363671 100363850 -23712322 + (GAA)n Simple_repeat Simple_repeat 3 178 0 6 1350 511 119 20 0 chr9 100363850 100363889 -23712283 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1350 310 70 23 0 chr9 100363889 100363932 -23712240 + (GGA)n Simple_repeat Simple_repeat 2 45 0 6 1350 212 152 0 42 chr9 100363936 100363984 -23712188 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 6 1350 375 266 16 16 chr9 100363984 100364110 -23712062 + (CGGA)n Simple_repeat Simple_repeat 3 128 0 6 1350 363 181 0 0 chr9 100364117 100364189 -23711983 + GA-rich Low_complexity Low_complexity 2 73 0 6 1350 1201 262 64 35 chr9 100364219 100364563 -23711609 - ORR1E LTR MaLR -5 354 1 6 1350 281 206 118 15 chr9 100364820 100364913 -23711259 + L1MC4a LINE L1 5556 5653 -2229 6 1350 1104 92 7 0 chr9 100364913 100365090 -23711082 + (CATA)n Simple_repeat Simple_repeat 1 182 -122 6 1350 1104 92 7 0 chr9 100365099 100365215 -23710957 + (CATA)n Simple_repeat Simple_repeat 183 304 0 6 1350 274 269 50 71 chr9 100365215 100365251 -23710921 + L1MC4a LINE L1 5661 5692 -2190 6 1350 276 170 0 0 chr9 100365306 100365359 -23710813 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1350 304 335 136 11 chr9 100365371 100365555 -23710617 + L1MC4a LINE L1 5780 5986 -1896 6 1350 676 279 85 8 chr9 100365889 100366149 -23710023 + B4A SINE B4 1 280 -12 6 1350 188 229 33 0 chr9 100366162 100366223 -23709949 + (CATA)n Simple_repeat Simple_repeat 4 66 0 6 1350 33 43 0 0 chr9 100369064 100369111 -23707061 + AT_rich Low_complexity Low_complexity 1 47 0 6 1350 432 82 0 0 chr9 100369112 100369173 -23706999 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1350 486 289 0 0 chr9 100369188 100369292 -23706880 - RSINE1 SINE B4 -59 106 3 6 1350 1166 188 144 38 chr9 100369416 100369866 -23706306 - RLTR20A2 LTR ERVK 0 541 1 6 1350 314 45 23 0 chr9 100370627 100370671 -23705501 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 6 1350 969 160 0 0 chr9 100370840 100370984 -23705188 + B1_Mur4 SINE Alu 1 144 -6 6 1350 1221 107 0 0 chr9 100370985 100371294 -23704878 + (GA)n Simple_repeat Simple_repeat 1 309 0 6 1350 395 299 85 60 chr9 100374243 100374442 -23701730 + MER3 DNA MER1_type 5 208 -1 6 1350 306 125 0 0 chr9 100375656 100375704 -23700468 + (TCC)n Simple_repeat Simple_repeat 2 49 0 6 1350 891 185 0 0 chr9 100375706 100375852 -23700320 - B1_Mus2 SINE Alu -1 146 1 6 1350 261 0 0 0 chr9 100375895 100375924 -23700248 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1350 793 161 77 0 chr9 100375955 100376085 -23700087 - B1_Mus1 SINE Alu -7 141 2 6 1350 334 324 99 20 chr9 100376145 100376296 -23699876 - RSINE1 SINE B4 0 165 3 6 1350 500 259 69 40 chr9 100376298 100376572 -23699600 - L1MA6 LINE L1 -1 6299 6018 6 1350 387 0 0 0 chr9 100376856 100376899 -23699273 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1350 649 246 156 0 chr9 100377020 100377231 -23698941 - L1MA6 LINE L1 -299 6001 5758 6 1350 3448 145 43 96 chr9 100377233 100377530 -23698642 - RMER6D LTR ERVK 0 756 370 6 1350 435 68 0 0 chr9 100377530 100377589 -23698583 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1350 3448 129 43 99 chr9 100377589 100378009 -23698163 - RMER6D LTR ERVK -351 369 1 6 1350 933 261 109 33 chr9 100378011 100378265 -23697907 - L1MA6 LINE L1 -592 5708 5465 6 1350 326 224 39 13 chr9 100378265 100378342 -23697830 - ID4 SINE ID 0 83 5 6 1350 933 257 109 31 chr9 100378342 100378539 -23697633 - L1MA6 LINE L1 -836 5464 5254 6 1350 545 213 56 42 chr9 100379695 100379837 -23696335 - B1F SINE Alu 0 149 6 6 1350 262 292 31 0 chr9 100379795 100379814 -23696358 + B4A SINE B4 65 85 -207 6 1350 249 269 98 115 chr9 100379814 100379936 -23696236 + PB1D7 SINE Alu 1 120 0 6 1350 300 207 26 0 chr9 100379989 100380105 -23696067 + (TG)n Simple_repeat Simple_repeat 2 120 0 6 1350 487 254 10 3 chr9 100380123 100380422 -23695750 + (TG)n Simple_repeat Simple_repeat 1 301 0 6 1350 229 209 47 0 chr9 100380436 100380479 -23695693 - ID4_ SINE ID -5 78 34 6 1350 1162 84 0 0 chr9 100380708 100380862 -23695310 + B2_Mm2 SINE B2 1 154 -41 6 1350 456 67 0 0 chr9 100380863 100380923 -23695249 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1350 482 271 104 32 chr9 100380932 100381153 -23695019 + L1MD LINE L1 4765 5001 -1145 6 1350 666 226 19 0 chr9 100381156 100381315 -23694857 + L1MD LINE L1 5237 5398 -748 6 1350 261 384 0 0 chr9 100381317 100381403 -23694769 + RSINE1 SINE B4 1 86 -79 6 1350 773 126 9 0 chr9 100381329 100381440 -23694732 + B3 SINE B2 12 123 -93 6 1350 966 242 102 54 chr9 100381487 100381858 -23694314 + L1MD LINE L1 5387 5775 -584 6 1350 307 305 19 84 chr9 100381905 100382059 -23694113 + MLT1D LTR MaLR 269 412 -93 6 1350 621 277 99 32 chr9 100382059 100382432 -23693740 - L1MC4a LINE L1 -25 7857 7460 6 1350 665 295 130 8 chr9 100383094 100383456 -23692716 - L1MC4a LINE L1 -567 7315 6910 6 1350 562 179 62 0 chr9 100383546 100383658 -23692514 - PB1D9 SINE Alu 0 120 2 6 1350 379 273 74 0 chr9 100383705 100383748 -23692424 - L1MD3 LINE L1 -122 7873 7823 6 1350 270 0 0 0 chr9 100383748 100383778 -23692394 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1350 379 273 74 0 chr9 100383778 100383855 -23692317 - L1MD3 LINE L1 -173 7822 7745 6 1350 485 189 66 0 chr9 100383869 100383975 -23692197 - L1MC4a LINE L1 -977 6905 6793 6 1350 249 320 57 19 chr9 100383975 100384080 -23692092 + MER5B DNA MER1_type 34 142 -36 6 1350 180 329 66 0 chr9 100384219 100384295 -23691877 + L2b LINE L2 3290 3370 -5 6 1350 245 360 87 8 chr9 100384696 100384822 -23691350 + MIRb SINE MIR 38 173 -95 6 1350 311 350 35 7 chr9 100384883 100385027 -23691145 + B1F SINE Alu 1 148 -1 6 1350 219 328 0 16 chr9 100385067 100385129 -23691043 + ID4 SINE ID 5 65 -18 6 1350 723 241 7 7 chr9 100385654 100385796 -23690376 - RSINE1 SINE B4 -22 143 2 6 1350 353 237 40 0 chr9 100387245 100387321 -23688851 - ID4_ SINE ID -3 80 2 6 1350 656 71 321 0 chr9 100387362 100387474 -23688698 + B1_Mus1 SINE Alu 1 148 0 6 1350 1237 61 0 0 chr9 100387641 100387789 -23688383 + B1_Mus1 SINE Alu 1 148 0 6 1350 252 271 0 0 chr9 100388049 100388108 -23688064 - L2c LINE L2 -4 3383 3325 6 1350 202 366 42 29 chr9 100388899 100389138 -23687034 - L2 LINE L2 -1255 2164 1923 6 1350 183 42 0 0 chr9 100390027 100390051 -23686121 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6 1350 631 248 48 39 chr9 100390053 100390259 -23685913 - ID_B1 SINE B4 -15 209 2 6 1350 633 194 129 75 chr9 100390793 100390994 -23685178 + B3 SINE B2 1 212 -4 6 1350 1147 118 15 56 chr9 100391133 100391330 -23684842 - B2_Mm2 SINE B2 -5 190 2 6 1350 310 240 83 0 chr9 100391446 100391542 -23684630 - ORR1E LTR MaLR -255 104 1 6 1350 228 224 33 33 chr9 100391994 100392054 -23684118 + ID4 SINE ID 22 81 -2 6 1350 311 259 70 12 chr9 100393231 100393317 -23682855 - PB1D10 SINE Alu -6 111 21 6 1350 251 252 227 27 chr9 100396172 100396282 -23679890 - MIRb SINE MIR -21 247 116 6 1350 1067 66 0 0 chr9 100396523 100396660 -23679512 - B1_Mus1 SINE Alu -11 137 1 6 1350 329 247 12 73 chr9 100397172 100397282 -23678890 + B1_Mur2 SINE Alu 43 149 0 6 1350 344 326 102 77 chr9 100399784 100400186 -23675986 + L1M4 LINE L1 518 929 -5613 6 1350 1090 205 107 26 chr9 100400344 100400690 -23675482 + Lx9 LINE L1 7247 7620 -24 6 1351 221 185 19 0 chr9 100401190 100401244 -23674928 + T-rich Low_complexity Low_complexity 2 56 0 6 1351 187 303 47 75 chr9 100401737 100401844 -23674328 + L2c LINE L2 3099 3202 -185 6 1351 288 211 130 13 chr9 100401973 100402050 -23674122 + RSINE1 SINE B4 8 93 -72 7 1351 21 36 0 0 chr9 100402530 100402558 -23673614 + AT_rich Low_complexity Low_complexity 1 28 0 7 1351 809 301 112 16 chr9 100402659 100402970 -23673202 - MLT1A0 LTR MaLR 0 365 25 7 1351 288 309 120 60 chr9 100402974 100403091 -23673081 + PB1 SINE Alu 1 124 -3 7 1351 292 358 103 26 chr9 100403253 100403448 -23672724 + MIRb SINE MIR 51 260 -8 7 1351 672 206 14 14 chr9 100403682 100403820 -23672352 - B1_Mus1 SINE Alu -10 138 1 7 1351 1562 27 32 0 chr9 100403833 100404018 -23672154 - B2_Mm1a SINE B2 -2 191 1 7 1351 679 250 96 15 chr9 100404020 100404219 -23671953 - B3 SINE B2 -1 215 1 7 1351 292 226 10 143 chr9 100404263 100404280 -23671892 + MT2B LTR ERVL 155 158 -443 7 1351 507 240 14 0 chr9 100404280 100404391 -23671781 + B1_Mm SINE Alu 1 115 -5 7 1351 180 214 0 23 chr9 100404919 100404962 -23671210 - L3 LINE CR1 -10 4479 4438 7 1351 189 132 25 50 chr9 100404928 100404968 -23671204 - MIR3 SINE MIR -23 185 147 7 1351 24 32 0 0 chr9 100405063 100405094 -23671078 + AT_rich Low_complexity Low_complexity 1 31 0 7 1351 739 187 104 0 chr9 100405466 100405600 -23670572 + B1_Mur3 SINE Alu 2 149 0 7 1351 25 31 0 0 chr9 100405718 100405750 -23670422 + AT_rich Low_complexity Low_complexity 1 32 0 7 1351 508 324 110 7 chr9 100405765 100405911 -23670261 - RSINE1 SINE B4 -2 163 3 7 1351 585 289 115 34 chr9 100405980 100406249 -23669923 + B4 SINE B4 2 292 0 7 1351 210 62 20 59 chr9 100406736 100406787 -23669385 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 7 1351 1155 54 169 0 chr9 100408613 100408779 -23667393 + B2_Mm2 SINE B2 2 195 0 7 1351 605 279 0 0 chr9 100409178 100409318 -23666854 + B1F SINE Alu 2 141 -8 7 1351 252 273 49 49 chr9 100409339 100409420 -23666752 + ID4_ SINE ID 2 82 -1 7 1351 356 332 92 34 chr9 100409661 100409867 -23666305 + L1MD LINE L1 2469 2686 -3460 7 1351 302 324 48 11 chr9 100410068 100410255 -23665917 + B3A SINE B2 3 196 -2 7 1351 846 143 13 33 chr9 100410635 100410787 -23665385 - B1_Mur4 SINE Alu -1 149 1 7 1351 180 0 0 0 chr9 100410805 100410825 -23665347 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1351 247 312 0 70 chr9 100411174 100411260 -23664912 + ID4 SINE ID 2 81 -2 7 1351 403 269 130 88 chr9 100411398 100411659 -23664513 + B4A SINE B4 4 275 -17 7 1351 267 54 0 0 chr9 100411659 100411696 -23664476 + (CAGAGA)n Simple_repeat Simple_repeat 4 40 0 7 1351 320 225 55 27 chr9 100411724 100411797 -23664375 + LTR86A2 LTR ERVL 14 88 -420 7 1351 234 0 0 0 chr9 100412266 100412292 -23663880 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1351 438 282 89 35 chr9 100412566 100412768 -23663404 - Tigger13a DNA MER2_type -266 505 293 7 1351 489 218 73 41 chr9 100413304 100413524 -23662648 + L1MD LINE L1 2606 2832 -3314 7 1351 231 267 31 62 chr9 100413862 100413958 -23662214 + MLT1A1 LTR MaLR 314 406 -2 7 1351 268 197 76 38 chr9 100413982 100414061 -23662111 + L1MD LINE L1 2831 2912 -3234 7 1351 229 228 75 52 chr9 100414061 100414157 -23662015 + B1F2 SINE Alu 47 147 -2 7 1351 378 0 0 0 chr9 100414158 100414200 -23661972 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1351 502 286 149 44 chr9 100414210 100414599 -23661573 + L1MD1 LINE L1 5347 5792 -2250 7 1351 301 242 70 31 chr9 100414612 100414740 -23661432 + L1MD1 LINE L1 5829 5961 -281 7 1351 754 186 226 6 chr9 100414785 100414953 -23661219 + B3 SINE B2 1 205 -11 7 1351 227 296 45 78 chr9 100415174 100415328 -23660844 - ORR1E LTR MaLR -165 194 46 7 1351 216 0 0 0 chr9 100415328 100415352 -23660820 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1351 1198 41 0 7 chr9 100415352 100415500 -23660672 - B1_Mus1 SINE Alu 0 148 2 7 1351 535 238 104 62 chr9 100415565 100415758 -23660414 + L1MD1 LINE L1 6034 6234 -8 7 1351 387 202 41 82 chr9 100415794 100415891 -23660281 - MLT1D LTR MaLR -13 492 400 7 1351 242 286 32 0 chr9 100416011 100416074 -23660098 - ID4_ SINE ID -9 74 10 7 1351 262 192 0 48 chr9 100416091 100416156 -23660016 - PB1D10 SINE Alu -8 112 49 7 1351 369 278 0 53 chr9 100416263 100416358 -23659814 + PB1D7 SINE Alu 22 111 -9 7 1351 312 274 27 14 chr9 100416378 100416452 -23659720 + RSINE1 SINE B4 74 148 -17 7 1351 441 218 32 6 chr9 100416720 100416887 -23659285 + B3 SINE B2 2 206 -10 7 1351 290 140 35 0 chr9 100416981 100417038 -23659134 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 7 1351 186 43 0 0 chr9 100417142 100417165 -23659007 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1351 17430 34 9 0 chr9 100417321 100419429 -23656743 + L1Md_F3 LINE L1 3459 5586 -297 7 1351 7926 36 22 1 chr9 100419429 100420405 -23655767 + L1Md_F3 LINE L1 5587 6583 -1 7 1351 1169 87 64 0 chr9 100420531 100420703 -23655469 - B2_Mm2 SINE B2 -9 186 4 7 1351 477 183 160 38 chr9 100420741 100420872 -23655300 - B1_Mur3 SINE Alu -2 147 1 7 1351 767 252 65 61 chr9 100421424 100421669 -23654503 + B4 SINE B4 8 253 -39 7 1351 694 204 30 0 chr9 100422337 100422469 -23653703 + B1_Mur2 SINE Alu 9 144 -5 7 1351 555 235 8 56 chr9 100423022 100423148 -23653024 - ID_B1 SINE B4 -21 203 84 7 1351 348 173 376 6 chr9 100423547 100423704 -23652468 + B3 SINE B2 2 216 0 7 1351 709 234 125 15 chr9 100423993 100424193 -23651979 + ID_B1 SINE B4 1 222 -2 7 1351 458 231 90 0 chr9 100424274 100424408 -23651764 + MLT1B LTR MaLR 26 171 -219 7 1351 1232 277 94 17 chr9 100424528 100424994 -23651178 + Lx8 LINE L1 6967 7468 -5 7 1351 670 291 26 7 chr9 100425024 100425176 -23650996 + B3A SINE B2 2 156 -42 7 1351 360 0 0 0 chr9 100425187 100425227 -23650945 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1351 382 290 60 43 chr9 100425791 100425975 -23650197 + L1M4c LINE L1 18 204 -6180 7 1351 246 328 41 0 chr9 100426098 100426220 -23649952 + L1M4c LINE L1 492 618 -5766 7 1351 324 0 0 0 chr9 100426281 100426317 -23649855 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1351 768 307 20 90 chr9 100427030 100427331 -23648841 + B4A SINE B4 1 280 -12 7 1351 314 308 105 46 chr9 100427661 100427814 -23648358 + MLT1B LTR MaLR 279 440 -8 7 1351 22 80 0 0 chr9 100427850 100427900 -23648272 + AT_rich Low_complexity Low_complexity 1 50 0 7 1351 442 188 109 0 chr9 100427918 100428019 -23648153 + B1F SINE Alu 7 118 -31 7 1351 250 271 157 25 chr9 100428019 100428039 -23648133 + ID_B1 SINE B4 88 224 0 7 1351 228 252 109 20 chr9 100428042 100428143 -23648029 - L1MB2 LINE L1 -81 6090 5981 7 1351 507 160 9 57 chr9 100428143 100428249 -23647923 + B1_Mm SINE Alu 47 147 0 7 1351 25 65 0 0 chr9 100428278 100428324 -23647848 + AT_rich Low_complexity Low_complexity 1 46 0 7 1351 1190 68 0 0 chr9 100428332 100428479 -23647693 + B1_Mus2 SINE Alu 1 147 0 7 1351 189 139 0 0 chr9 100428480 100428523 -23647649 + (A)n Simple_repeat Simple_repeat 1 43 0 7 1351 1044 204 90 76 chr9 100428582 100429044 -23647128 - RMER6A LTR ERVK 0 720 264 7 1351 686 67 0 0 chr9 100429039 100429128 -23647044 - RMER6C LTR ERVK -601 89 1 7 1351 374 272 75 75 chr9 100429416 100429603 -23646569 + RLTR23 LTR ERV1 244 430 0 7 1351 272 222 82 100 chr9 100429659 100429751 -23646421 + L1MB2 LINE L1 5887 5980 -191 7 1351 1350 88 5 20 chr9 100429751 100429949 -23646223 + B2_Mm2 SINE B2 1 195 0 7 1351 272 222 82 100 chr9 100429949 100430026 -23646146 + L1MB2 LINE L1 5981 6053 -118 7 1351 272 282 56 0 chr9 100430080 100430151 -23646021 + PB1D10 SINE Alu 43 117 0 7 1351 396 244 17 3 chr9 100430385 100430481 -23645691 + ID_B1 SINE B4 19 118 -174 7 1351 265 221 314 0 chr9 100430453 100430539 -23645633 + PB1D9 SINE Alu 6 118 -2 7 1351 439 264 17 81 chr9 100430552 100430725 -23645447 + RSINE1 SINE B4 4 165 0 7 1351 226 222 0 0 chr9 100430735 100430780 -23645392 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1351 304 273 32 64 chr9 100430888 100430982 -23645190 + ID_B1 SINE B4 70 160 -64 7 1351 449 207 0 50 chr9 100430901 100431014 -23645158 + B1_Mur3 SINE Alu 5 114 -6 7 1351 231 299 70 86 chr9 100430940 100431068 -23645104 + RLTR25B LTR ERVK 442 567 -461 7 1351 1195 85 6 33 chr9 100431146 100431329 -23644843 + B2_Mm2 SINE B2 1 178 -17 7 1351 328 284 62 27 chr9 100431677 100431789 -23644383 - HAL1 LINE L1 -1571 936 821 7 1351 357 300 100 0 chr9 100431856 100431956 -23644216 - PB1D10 SINE Alu -3 114 5 7 1351 315 191 0 0 chr9 100432228 100432291 -23643881 - L1MB8 LINE L1 -3 6175 6113 7 1351 392 303 31 39 chr9 100432428 100432555 -23643617 + B4A SINE B4 166 291 -1 7 1351 21 36 0 0 chr9 100432747 100432775 -23643397 + AT_rich Low_complexity Low_complexity 1 28 0 7 1351 354 319 108 16 chr9 100432785 100432970 -23643202 - B3 SINE B2 -13 203 2 7 1351 593 196 70 0 chr9 100432970 100433113 -23643059 - L1MB8 LINE L1 -284 5894 5742 7 1351 599 277 15 0 chr9 100433936 100434073 -23642099 - RSINE1 SINE B4 -25 140 2 7 1351 219 69 0 0 chr9 100434178 100434207 -23641965 + (CGTG)n Simple_repeat Simple_repeat 2 30 0 7 1351 1120 58 0 0 chr9 100434312 100434451 -23641721 + B1_Mus2 SINE Alu 1 139 -8 7 1351 1288 79 40 0 chr9 100434499 100434676 -23641496 + B2_Mm2 SINE B2 1 184 -11 7 1351 25 0 0 0 chr9 100434680 100434705 -23641467 + AT_rich Low_complexity Low_complexity 1 25 0 7 1351 225 0 0 0 chr9 100435132 100435157 -23641015 + (CAA)n Simple_repeat Simple_repeat 3 27 0 7 1351 221 276 0 17 chr9 100435224 100435283 -23640889 - PB1 SINE Alu -49 78 21 7 1351 239 225 4 83 chr9 100435324 100435391 -23640781 - B1F SINE Alu 0 149 54 7 1351 893 256 52 9 chr9 100435737 100435969 -23640203 + ORR1D1 LTR MaLR 1 242 -132 7 1351 572 324 26 13 chr9 100436278 100436634 -23639538 + L1M2a LINE L1 1750 2108 -5060 8 1351 2574 87 86 38 chr9 100436691 100437109 -23639063 + Lx2 LINE L1 6554 6991 -6 8 1351 230 190 0 23 chr9 100437121 100437164 -23639008 + ID4 SINE ID 2 43 -40 8 1351 320 252 139 0 chr9 100437182 100437297 -23638875 + L1M2a LINE L1 2231 2361 -4807 8 1351 515 16 16 0 chr9 100437306 100437370 -23638802 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 8 1351 214 149 21 21 chr9 100437466 100437514 -23638658 + (TTA)n Simple_repeat Simple_repeat 3 50 0 8 1351 298 338 44 44 chr9 100437662 100437798 -23638374 + RSINE1 SINE B4 11 146 -19 8 1351 398 53 0 17 chr9 100437800 100437858 -23638314 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1351 798 224 22 0 chr9 100437893 100438072 -23638100 + B3A SINE B2 1 183 -15 8 1351 423 177 40 40 chr9 100438116 100438216 -23637956 + B3 SINE B2 31 130 -86 8 1351 26 0 0 0 chr9 100438248 100438274 -23637898 + AT_rich Low_complexity Low_complexity 1 26 0 8 1351 745 278 24 0 chr9 100438324 100438529 -23637643 + B3 SINE B2 1 210 -6 8 1351 281 254 15 15 chr9 100438664 100438732 -23637440 + ID2 SINE ID 15 82 -1 8 1351 653 290 55 14 chr9 100438735 100439050 -23637122 + L1M2a LINE L1 4897 5222 -1942 8 1351 836 286 172 25 chr9 100439076 100439235 -23636937 + MTD LTR MaLR 20 204 -215 8 1351 357 24 0 0 chr9 100439235 100439277 -23636895 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1351 836 246 111 66 chr9 100439277 100439469 -23636703 + MTD LTR MaLR 205 392 -27 8 1351 712 165 8 23 chr9 100439561 100439691 -23636481 + B1_Mur3 SINE Alu 14 141 -8 8 1351 222 0 79 0 chr9 100439691 100439729 -23636443 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 1351 1024 244 44 58 chr9 100439758 100439947 -23636225 + L1M2a LINE L1 5804 6004 -1160 8 1351 1170 68 0 0 chr9 100439947 100440094 -23636078 + B1_Mus2 SINE Alu 1 147 0 8 1351 1024 235 37 57 chr9 100440094 100440365 -23635807 + L1M2a LINE L1 6005 6266 -898 8 1351 268 308 25 108 chr9 100440382 100440502 -23635670 + ID_B1 SINE B4 60 169 -55 8 1351 329 330 58 21 chr9 100440422 100440532 -23635640 + PB1D7 SINE Alu 6 119 -1 8 1351 466 248 238 12 chr9 100440537 100440723 -23635449 + L1M2a LINE L1 6321 6568 -750 8 1351 1138 223 130 9 chr9 100440723 100441053 -23635119 - ORR1D2 LTR MaLR 0 370 1 8 1351 468 237 79 9 chr9 100441053 100441189 -23634983 + L1M2a LINE L1 6569 6716 -596 8 1351 364 325 8 33 chr9 100441242 100441363 -23634809 - ID_B1 SINE B4 -19 205 88 8 1351 505 224 26 8 chr9 100441448 100441565 -23634607 - B3 SINE B2 -75 141 23 8 1351 366 219 0 14 chr9 100441823 100441897 -23634275 + ID4_ SINE ID 5 77 -6 8 1351 309 227 13 39 chr9 100441914 100441992 -23634180 + ID_B1 SINE B4 116 191 -33 8 1351 693 196 14 28 chr9 100442152 100442294 -23633878 - B1_Mur3 SINE Alu 0 149 10 8 1351 301 280 0 161 chr9 100442196 100442345 -23633827 - MT2B LTR ERVL -344 257 133 8 1351 359 294 71 0 chr9 100442331 100442416 -23633756 - PB1D10 SINE Alu 0 117 27 8 1351 706 236 0 46 chr9 100442532 100442683 -23633489 + B1_Mur1 SINE Alu 1 144 -5 8 1351 264 296 17 77 chr9 100443259 100443376 -23632796 + PB1 SINE Alu 16 125 -2 8 1351 360 278 130 82 chr9 100443842 100444026 -23632146 + B3A SINE B2 1 193 -23 8 1351 419 255 19 9 chr9 100444076 100444183 -23631989 + RSINE1 SINE B4 10 117 -48 8 1351 209 256 51 13 chr9 100444295 100444374 -23631798 + GA-rich Low_complexity Low_complexity 5 86 0 8 1351 311 215 114 0 chr9 100444430 100444509 -23631663 + B3A SINE B2 7 94 -104 8 1351 860 201 83 25 chr9 100447437 100447641 -23628531 - B3 SINE B2 0 216 1 8 1351 260 218 27 90 chr9 100447896 100447907 -23628265 + ID_B1 SINE B4 121 223 0 8 1351 557 32 101 61 chr9 100447907 100448006 -23628166 + B1_Mus2 SINE Alu 45 147 0 8 1351 216 0 0 0 chr9 100448012 100448036 -23628136 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 1351 475 233 19 10 chr9 100448036 100448140 -23628032 + B1_Mur2 SINE Alu 45 149 0 8 1351 408 236 71 121 chr9 100448881 100449021 -23627151 - B3 SINE B2 -31 164 32 8 1351 1600 133 167 24 chr9 100449088 100449581 -23626591 + RLTR12A LTR ERVK 1 563 -5 8 1351 366 307 0 10 chr9 100449997 100450099 -23626073 - PB1D10 SINE Alu -16 101 1 8 1351 348 250 142 19 chr9 100450306 100450412 -23625760 + PB1D7 SINE Alu 2 120 0 8 1351 23 0 0 0 chr9 100450412 100450435 -23625737 + AT_rich Low_complexity Low_complexity 1 23 0 8 1351 243 224 136 77 chr9 100450448 100450603 -23625569 - LTR50 LTR ERVL -135 660 497 8 1351 195 100 0 0 chr9 100450769 100450799 -23625373 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1351 378 289 79 0 chr9 100450955 100451069 -23625103 - PB1 SINE Alu -3 124 2 8 1351 24 0 0 0 chr9 100451358 100451382 -23624790 + AT_rich Low_complexity Low_complexity 1 24 0 8 1351 306 224 41 41 chr9 100451382 100451503 -23624669 - Lx8 LINE L1 0 7473 7353 8 1351 236 136 0 92 chr9 100451520 100451585 -23624587 - B1_Mur4 SINE Alu 0 150 92 8 1351 779 167 27 27 chr9 100452319 100452467 -23623705 + B1_Mur3 SINE Alu 2 149 0 8 1351 21 36 0 0 chr9 100452615 100452643 -23623529 + AT_rich Low_complexity Low_complexity 1 28 0 8 1351 384 271 31 0 chr9 100454337 100454433 -23621739 - PB1D10 SINE Alu -6 111 13 8 1351 312 27 0 0 chr9 100454584 100454621 -23621551 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 1351 303 167 50 0 chr9 100454637 100454697 -23621475 - B3A SINE B2 -135 63 1 8 1351 251 195 0 0 chr9 100454729 100454770 -23621402 + B1F2 SINE Alu 1 41 -108 8 1351 250 312 61 56 chr9 100455139 100455319 -23620853 - L3 LINE CR1 -3388 1101 921 8 1351 447 240 64 32 chr9 100455856 100455981 -23620191 + ID_B1 SINE B4 96 224 0 8 1351 476 299 58 13 chr9 100456599 100456755 -23619417 + RSINE1 SINE B4 3 165 0 8 1351 860 163 214 0 chr9 100456805 100456983 -23619189 - B3 SINE B2 0 216 1 8 1351 25 31 0 0 chr9 100457043 100457075 -23619097 + AT_rich Low_complexity Low_complexity 1 32 0 8 1351 312 282 0 0 chr9 100457150 100457228 -23618944 + MLT2C1 LTR ERVL 30 107 -290 8 1351 516 225 0 40 chr9 100457244 100457369 -23618803 + ID_B1 SINE B4 105 224 0 8 1351 613 92 10 10 chr9 100457370 100457469 -23618703 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 8 1351 501 17 0 0 chr9 100458486 100458544 -23617628 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1351 764 219 0 0 chr9 100459094 100459231 -23616941 - B1_Mur2 SINE Alu -12 137 1 8 1351 408 125 0 0 chr9 100459457 100459521 -23616651 + (GGA)n Simple_repeat Simple_repeat 3 66 0 8 1351 691 290 43 0 chr9 100460355 100460562 -23615610 + ID_B1 SINE B4 2 217 -7 8 1351 333 0 0 0 chr9 100460935 100460972 -23615200 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1351 954 69 10 3 chr9 100462997 100463144 -23613028 + B2_Mm2 SINE B2 1 155 -61 8 1351 23 0 0 0 chr9 100463592 100463615 -23612557 + AT_rich Low_complexity Low_complexity 1 23 0 8 1351 224 362 0 0 chr9 100463624 100463693 -23612479 + ID4_ SINE ID 4 72 -11 8 1351 593 259 69 69 chr9 100463815 100464018 -23612154 + MLT1A0 LTR MaLR 158 360 -5 8 1351 21 0 0 0 chr9 100464037 100464058 -23612114 + AT_rich Low_complexity Low_complexity 1 21 0 8 1351 915 161 224 0 chr9 100464065 100464239 -23611933 + B3 SINE B2 1 213 -3 8 1351 228 35 0 0 chr9 100464243 100464272 -23611900 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1351 585 275 64 0 chr9 100464320 100464491 -23611681 - B3A SINE B2 -16 182 1 8 1351 1326 113 11 0 chr9 100464509 100464695 -23611477 - B2_Mm2 SINE B2 -7 188 1 8 1351 326 277 32 0 chr9 100465260 100465354 -23610818 + PB1D10 SINE Alu 14 110 -7 8 1351 600 299 0 7 chr9 100465647 100465792 -23610380 + RSINE1 SINE B4 1 144 -21 8 1351 896 258 56 19 chr9 100466660 100466929 -23609243 + B4A SINE B4 9 287 -5 8 1351 328 300 0 0 chr9 100466929 100467009 -23609163 + (CA)n Simple_repeat Simple_repeat 1 80 0 8 1351 1019 266 64 72 chr9 100467026 100467402 -23608770 + MTE2a LTR MaLR 1 373 -6 8 1351 405 250 153 32 chr9 100467511 100467635 -23608537 + B1_Mur1 SINE Alu 9 147 -2 8 1351 310 292 99 8 chr9 100467649 100467770 -23608402 + L1MB1 LINE L1 5264 5395 -729 8 1351 790 61 165 0 chr9 100468078 100468193 -23607979 + B1_Mm SINE Alu 2 135 -12 8 1351 537 16 0 0 chr9 100468193 100468255 -23607917 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 8 1351 716 196 36 0 chr9 100468274 100468412 -23607760 + B1_Mus2 SINE Alu 5 147 0 8 1351 847 284 89 11 chr9 100468473 100468822 -23607350 + L1MB1 LINE L1 5733 6108 -60 8 1351 752 279 20 0 chr9 100468899 100469103 -23607069 - B3 SINE B2 0 216 9 8 1351 535 283 13 27 chr9 100469131 100469280 -23606892 + ID_B1 SINE B4 76 222 -2 8 1351 303 286 26 95 chr9 100469292 100469408 -23606764 + PB1D10 SINE Alu 2 109 -8 8 1351 861 137 130 6 chr9 100469463 100469625 -23606547 - URR1A DNA MER1_type -43 183 2 8 1351 300 27 0 0 chr9 100469802 100469839 -23606333 + (ATTG)n Simple_repeat Simple_repeat 1 37 0 8 1351 228 326 0 0 chr9 100469845 100469914 -23606258 - ID4 SINE ID -14 69 1 8 1351 477 184 0 0 chr9 100472388 100472497 -23603675 + (CA)n Simple_repeat Simple_repeat 1 109 0 8 1351 408 241 0 0 chr9 100472562 100472678 -23603494 + (CA)n Simple_repeat Simple_repeat 2 117 0 8 1351 1267 193 72 149 chr9 100472690 100472970 -23603202 + RLTR11A2 LTR ERVK 103 354 -173 8 1351 1227 48 0 0 chr9 100472970 100473116 -23603056 - B1_Mus2 SINE Alu 0 147 2 8 1351 1267 193 72 149 chr9 100473116 100473279 -23602893 + RLTR11A2 LTR ERVK 355 512 -15 8 1351 180 77 0 0 chr9 100473284 100473310 -23602862 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1351 343 229 36 12 chr9 100473407 100473491 -23602681 + PB1D10 SINE Alu 26 111 -6 8 1351 317 286 14 0 chr9 100473496 100473566 -23602606 + ID4_ SINE ID 3 73 -10 8 1351 279 0 0 0 chr9 100474076 100474107 -23602065 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1351 600 14 0 0 chr9 100474169 100474238 -23601934 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 9 1351 939 250 148 58 chr9 100474958 100475302 -23600870 - MTE2a LTR MaLR -1 378 4 9 1351 1050 271 26 8 chr9 100476008 100476276 -23599896 - B4A SINE B4 -19 273 1 9 1351 301 274 36 0 chr9 100476547 100476631 -23599541 + PB1D10 SINE Alu 31 117 0 9 1351 257 274 0 0 chr9 100477077 100477139 -23599033 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1351 691 256 72 72 chr9 100477147 100477438 -23598734 - B4 SINE B4 0 292 2 9 1351 262 225 51 59 chr9 100477575 100477693 -23598479 + L1M2 LINE L1 4249 4365 -1775 9 1351 2498 95 0 6 chr9 100477698 100478027 -23598145 - ORR1A2 LTR MaLR 0 327 1 9 1351 938 224 14 33 chr9 100478027 100478239 -23597933 + B3 SINE B2 4 211 -5 9 1351 387 0 0 0 chr9 100478254 100478297 -23597875 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1351 31 99 0 0 chr9 100478511 100478612 -23597560 + AT_rich Low_complexity Low_complexity 1 101 0 9 1351 452 226 16 8 chr9 100478612 100478737 -23597435 + L1M2 LINE L1 4530 4655 -1488 9 1351 1054 260 193 9 chr9 100478872 100479098 -23597074 + L1M4 LINE L1 4670 4908 -1238 9 1351 182 37 37 0 chr9 100479098 100479125 -23597047 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 9 1351 1054 260 193 9 chr9 100479125 100479329 -23596843 + L1M4 LINE L1 4909 5178 -968 9 1351 269 314 64 19 chr9 100479337 100479493 -23596679 + RSINE1 SINE B4 3 165 0 9 1351 453 266 49 7 chr9 100479615 100479759 -23596413 + L1M4 LINE L1 5319 5468 -715 9 1351 309 224 12 50 chr9 100479775 100479855 -23596317 - ID4 SINE ID -1 82 6 9 1351 334 140 0 0 chr9 100479888 100479938 -23596234 + L1M4 LINE L1 5486 5535 -648 9 1351 622 222 59 0 chr9 100480027 100480162 -23596010 + B3 SINE B2 65 207 -9 9 1351 587 213 15 7 chr9 100480260 100480397 -23595775 - MTD LTR MaLR -4 415 278 9 1351 779 270 10 0 chr9 100481118 100481314 -23594858 - B3A SINE B2 0 198 1 9 1351 216 214 0 0 chr9 100482083 100482139 -23594033 + CT-rich Low_complexity Low_complexity 4 59 0 9 1351 261 345 77 22 chr9 100482466 100482647 -23593525 + MIR3 SINE MIR 4 194 -14 9 1351 737 221 79 6 chr9 100482832 100483009 -23593163 + B3A SINE B2 5 194 -4 9 1351 890 180 0 6 chr9 100483017 100483196 -23592976 + GA-rich Low_complexity Low_complexity 3 180 0 9 1351 193 71 95 0 chr9 100483280 100483322 -23592850 + (TCTG)n Simple_repeat Simple_repeat 4 49 0 9 1351 1106 249 33 116 chr9 100483415 100483702 -23592470 - MER31A LTR ERV1 -122 363 99 9 1351 534 252 113 14 chr9 100483702 100483843 -23592329 - RSINE1 SINE B4 -8 157 3 9 1351 1106 249 33 116 chr9 100483843 100483951 -23592221 - MER31A LTR ERV1 -387 98 1 9 1351 576 300 135 25 chr9 100484392 100484836 -23591336 + HAL1 LINE L1 567 1059 -1448 9 1351 344 302 57 25 chr9 100484853 100484975 -23591197 + ID_B1 SINE B4 99 224 0 9 1351 804 164 15 0 chr9 100484989 100485123 -23591049 + B1_Mur2 SINE Alu 7 142 -7 9 1351 797 10 0 20 chr9 100485466 100485565 -23590607 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 9 1351 903 255 5 0 chr9 100485579 100485783 -23590389 - B3 SINE B2 -11 205 1 9 1351 1239 41 0 0 chr9 100485807 100485954 -23590218 - B1_Mm SINE Alu 0 147 1 9 1351 201 147 0 0 chr9 100486636 100486670 -23589502 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 9 1351 7552 113 5 16 chr9 100486689 100488057 -23588115 - Lx LINE L1 -2 6652 5299 9 1351 1186 74 0 0 chr9 100488057 100488205 -23587967 - B1_Mus1 SINE Alu 0 148 1 9 1351 4428 138 6 11 chr9 100488205 100488318 -23587854 - Lx LINE L1 -585 5298 5189 9 1351 7458 63 10 1 chr9 100488317 100489743 -23586429 - L1VL4 LINE L1 -1717 1842 401 9 1351 975 284 52 28 chr9 100489808 100490232 -23585940 - L1M2 LINE L1 -497 5800 5367 9 1351 630 255 0 7 chr9 100490371 100490521 -23585651 - B1_Mur1 SINE Alu 0 149 1 9 1351 244 272 148 0 chr9 100490611 100490692 -23585480 - B2_Mm2 SINE B2 -74 121 29 9 1351 338 319 35 43 chr9 100491591 100491732 -23584440 - ORR1E LTR MaLR -212 147 8 9 1351 823 231 119 110 chr9 100491739 100491870 -23584302 + MTEa LTR MaLR 13 161 -218 9 1351 432 0 0 0 chr9 100491870 100491918 -23584254 + (TAA)n Simple_repeat Simple_repeat 3 50 0 9 1351 522 270 28 35 chr9 100491925 100492067 -23584105 + B1F SINE Alu 1 141 -8 9 1351 823 231 119 110 chr9 100492067 100492272 -23583900 + MTEa LTR MaLR 162 360 -19 9 1351 2456 138 19 52 chr9 100492272 100492693 -23583479 + MTB_Mm LTR MaLR 1 407 0 9 1351 225 24 47 23 chr9 100493196 100493239 -23582933 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 9 1351 397 239 139 51 chr9 100493241 100493553 -23582619 + RLTR9E LTR ERVK 14 403 -6 9 1351 772 215 123 5 chr9 100494209 100494396 -23581776 - B3 SINE B2 -6 210 2 9 1351 633 14 0 0 chr9 100494409 100494483 -23581689 + (TC)n Simple_repeat Simple_repeat 1 74 0 9 1351 246 219 0 0 chr9 100494653 100494717 -23581455 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1351 574 293 67 0 chr9 100494867 100495031 -23581141 + B4A SINE B4 99 273 -19 9 1351 267 246 0 16 chr9 100495051 100495113 -23581059 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1351 403 313 39 75 chr9 100495135 100495469 -23580703 + MTEa LTR MaLR 24 356 -23 9 1351 930 122 439 11 chr9 100495669 100495939 -23580233 + ORR1B1 LTR MaLR 1 386 -8 9 1351 867 134 273 6 chr9 100495973 100496138 -23580034 - B3 SINE B2 -7 209 1 9 1351 450 239 152 13 chr9 100496155 100496392 -23579780 + Charlie2b DNA MER1_type 2217 2486 -296 9 1351 829 256 43 0 chr9 100496400 100496611 -23579561 + ID_B1 SINE B4 4 223 -1 9 1351 296 321 56 28 chr9 100496640 100496784 -23579388 + RSINE1 SINE B4 4 151 -14 9 1351 823 163 90 6 chr9 100496848 100497015 -23579157 - ORR1B2 LTR MaLR -186 181 1 9 1351 257 321 0 36 chr9 100497051 100497135 -23579037 - ID2 SINE ID -2 81 1 9 1351 504 304 21 26 chr9 100497169 100497402 -23578770 + Charlie2b DNA MER1_type 2551 2782 0 9 1351 1048 83 7 0 chr9 100497421 100497566 -23578606 + B1_Mus1 SINE Alu 3 148 0 9 1351 218 255 0 0 chr9 100497591 100497642 -23578530 + B1F SINE Alu 96 146 -3 9 1351 384 342 10 50 chr9 100497793 100497906 -23578266 - ID_B1 SINE B4 -1 223 119 9 1351 252 86 0 0 chr9 100497906 100497941 -23578231 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1351 384 342 10 50 chr9 100497941 100498027 -23578145 - ID_B1 SINE B4 -106 118 32 9 1351 423 257 26 17 chr9 100498657 100498772 -23577400 + PB1D10 SINE Alu 1 116 -1 9 1351 787 117 0 0 chr9 100498800 100498920 -23577252 - B1_Mus2 SINE Alu -11 136 17 9 1351 279 79 0 0 chr9 100498924 100498962 -23577210 + (CCA)n Simple_repeat Simple_repeat 2 39 0 9 1351 266 250 39 13 chr9 100499640 100499717 -23576455 + ID2 SINE ID 3 81 -2 9 1351 345 349 36 40 chr9 100499759 100499983 -23576189 + MIR SINE MIR 15 237 -25 9 1351 189 284 35 118 chr9 100501291 100501435 -23574737 - MIR SINE MIR -66 196 65 1 1351 361 311 61 0 chr9 100501641 100501746 -23574426 + MTE2a LTR MaLR 1 123 -256 2 1351 701 250 0 0 chr9 100501807 100501963 -23574209 + MTE2a LTR MaLR 213 368 -11 2 1351 224 116 0 122 chr9 100502105 100502154 -23574018 + A-rich Low_complexity Low_complexity 3 45 0 3 1351 429 313 33 20 chr9 100502370 100502520 -23573652 - ID_B1 SINE B4 0 224 73 4 1351 527 0 16 0 chr9 100502947 100503010 -23573162 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1351 234 393 122 8 chr9 100503321 100503575 -23572597 - MER102b DNA MER1_type -58 283 1 6 1351 616 245 46 52 chr9 100504498 100504692 -23571480 + B3A SINE B2 3 195 -3 7 1351 27 0 0 0 chr9 100504692 100504719 -23571453 + AT_rich Low_complexity Low_complexity 1 27 0 8 1351 269 235 129 115 chr9 100504791 100505147 -23571025 + RMER10A LTR ERVL 12 372 -70 9 1351 1100 111 0 6 chr9 100505235 100505407 -23570765 + (TCC)n Simple_repeat Simple_repeat 2 172 0 1 1351 189 94 0 0 chr9 100505700 100505732 -23570440 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1351 990 135 13 20 chr9 100505745 100505896 -23570276 - B1_Mur4 SINE Alu 0 150 1 1 1351 515 232 112 97 chr9 100505902 100505928 -23570244 - B3 SINE B2 -15 201 169 1 1351 279 0 0 0 chr9 100505928 100505959 -23570213 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1351 520 209 74 97 chr9 100505959 100506128 -23570044 - B3A SINE B2 -48 168 3 1 1351 324 0 0 0 chr9 100506990 100507026 -23569146 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1351 1160 82 0 0 chr9 100507260 100507407 -23568765 + B1_Mus1 SINE Alu 2 148 0 1 1351 375 141 0 0 chr9 100507407 100507485 -23568687 + (A)n Simple_repeat Simple_repeat 1 78 0 1 1351 688 265 77 80 chr9 100507650 100507962 -23568210 + ORR1E LTR MaLR 2 312 -47 1 1351 1512 157 36 50 chr9 100509262 100509713 -23566459 + RMER17C LTR ERVK 16 439 -519 1 1351 293 244 12 24 chr9 100509863 100509947 -23566225 - PB1D10 SINE Alu -11 106 24 2 1351 254 291 11 23 chr9 100510867 100510955 -23565217 - MTEb LTR MaLR -15 364 278 2 1351 183 80 0 0 chr9 100511548 100511573 -23564599 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 2 1351 839 142 7 21 chr9 100511576 100511720 -23564452 - B1_Mur1 SINE Alu -5 144 3 2 1351 1444 190 162 0 chr9 100511838 100512190 -23563982 + MTD LTR MaLR 7 415 -4 2 1351 348 24 0 0 chr9 100512734 100512775 -23563397 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 2 1351 531 264 8 24 chr9 100512793 100512917 -23563255 + B4A SINE B4 1 122 -170 2 1351 476 254 0 85 chr9 100513047 100513176 -23562996 + RSINE1 SINE B4 48 165 0 2 1351 227 268 111 14 chr9 100513208 100513280 -23562892 + B4 SINE B4 202 280 -12 2 1351 909 261 0 5 chr9 100513538 100513754 -23562418 - B3 SINE B2 0 216 2 2 1351 722 225 6 0 chr9 100513795 100513973 -23562199 + CT-rich Low_complexity Low_complexity 2 180 0 2 1351 352 359 44 0 chr9 100514171 100514330 -23561842 + LTR16A LTR ERVL 23 188 -263 3 1351 244 279 75 28 chr9 100514379 100514486 -23561686 - L1MC LINE L1 -626 5718 5607 3 1351 597 226 194 12 chr9 100514475 100514515 -23561657 - L1MC1 LINE L1 -420 5924 5884 3 1351 1519 142 144 64 chr9 100514515 100514861 -23561311 - ORR1D1 LTR MaLR 0 374 1 3 1351 673 222 161 8 chr9 100514861 100515100 -23561072 - L1MC1 LINE L1 -461 5883 5582 3 1351 621 275 0 0 chr9 100515100 100515249 -23560923 + B1F SINE Alu 1 149 0 3 1351 355 305 130 17 chr9 100515258 100515488 -23560684 - L1MC1 LINE L1 -761 5583 5328 3 1351 344 311 10 0 chr9 100515528 100515631 -23560541 - B1F SINE Alu -15 134 31 3 1351 650 239 6 48 chr9 100515638 100515649 -23560523 - RSINE1 SINE B4 -3 162 152 3 1351 1473 53 0 3 chr9 100515649 100515952 -23560220 + (TG)n Simple_repeat Simple_repeat 1 302 0 3 1351 650 239 6 48 chr9 100515952 100516104 -23560068 - RSINE1 SINE B4 -14 151 4 3 1351 615 289 171 38 chr9 100516108 100516554 -23559618 - L1MC1 LINE L1 -1003 5143 4639 3 1351 1116 261 63 61 chr9 100516529 100517098 -23559074 - L1MC LINE L1 -1686 4460 3871 3 1351 1222 48 0 7 chr9 100518141 100518288 -23557884 + B1_Mus2 SINE Alu 2 147 0 3 1351 26 82 0 0 chr9 100518825 100518886 -23557286 + AT_rich Low_complexity Low_complexity 1 61 0 3 1351 439 250 8 0 chr9 100519214 100519334 -23556838 + B3A SINE B2 2 122 -76 4 1351 1053 249 174 64 chr9 100519336 100519808 -23556364 + MT2A LTR ERVL 3 526 -7 4 1351 500 0 17 0 chr9 100519852 100519912 -23556260 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1351 387 0 0 0 chr9 100520956 100520999 -23555173 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1351 369 0 0 0 chr9 100521152 100521193 -23554979 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1351 189 0 0 0 chr9 100521193 100521213 -23554959 + (GA)n Simple_repeat Simple_repeat 1 21 0 4 1351 232 260 229 9 chr9 100521222 100521327 -23554845 - B4 SINE B4 -32 260 133 4 1351 28 29 0 0 chr9 100521348 100521383 -23554789 + AT_rich Low_complexity Low_complexity 1 35 0 4 1351 308 302 52 0 chr9 100521840 100521936 -23554236 - LTR16A LTR ERVL -13 438 338 4 1351 497 309 0 0 chr9 100521932 100522068 -23554104 - RSINE1 SINE B4 -28 137 2 4 1351 2475 130 173 86 chr9 100522328 100522865 -23553307 - RLTR31A_Mm LTR ERVK 0 584 1 5 1351 2593 124 41 27 chr9 100522911 100523351 -23552821 - RMER1B Other Other 0 1066 621 5 1351 248 244 140 23 chr9 100523762 100523933 -23552239 - L1M2 LINE L1 -884 5259 5085 5 1351 422 351 45 38 chr9 100524021 100524287 -23551885 - Lx8 LINE L1 -156 7317 7050 5 1351 35 0 0 22 chr9 100524333 100524363 -23551809 + AT_rich Low_complexity Low_complexity 1 30 0 5 1351 689 216 97 0 chr9 100524363 100524497 -23551675 - B1_Mur1 SINE Alu -2 147 1 5 1351 35 0 0 22 chr9 100524497 100524512 -23551660 + AT_rich Low_complexity Low_complexity 1 15 0 5 1351 402 151 0 0 chr9 100524587 100524660 -23551512 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1351 671 224 97 0 chr9 100524740 100524874 -23551298 + B1_Mur1 SINE Alu 1 147 -2 5 1351 231 36 0 0 chr9 100524887 100524915 -23551257 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1351 635 264 111 8 chr9 100524915 100525159 -23551013 - Lx9 LINE L1 -189 7455 7187 6 1351 204 125 0 0 chr9 100525159 100525191 -23550981 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1351 1872 218 78 36 chr9 100526452 100526927 -23549245 - Lx9 LINE L1 -442 7202 6708 6 1351 1552 300 69 9 chr9 100526929 100527480 -23548692 - Lx8 LINE L1 -457 7016 6433 5 1351 307 92 0 64 chr9 100527552 100527601 -23548571 - ORR1A2 LTR MaLR -6 368 273 6 1351 450 0 0 0 chr9 100527601 100527651 -23548521 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6 1351 307 82 0 75 chr9 100527651 100527664 -23548508 - ORR1A2 LTR MaLR -54 272 263 6 1351 1315 19 0 0 chr9 100527664 100527811 -23548361 - B2_Mm1a SINE B2 -33 160 1 6 1351 1829 130 3 0 chr9 100527811 100528094 -23548078 - ORR1A2 LTR MaLR -43 284 1 6 1351 1448 305 86 43 chr9 100528098 100528811 -23547361 - Lx8 LINE L1 -1111 6362 5620 5 1351 1678 280 98 83 chr9 100528954 100529114 -23547058 - L1M2 LINE L1 -1002 5141 4982 6 1351 1158 85 0 0 chr9 100529114 100529278 -23546894 + (TG)n Simple_repeat Simple_repeat 1 164 0 6 1351 1678 280 98 83 chr9 100529278 100530018 -23546154 - L1M2 LINE L1 -1162 4981 4193 6 1351 535 192 189 16 chr9 100530018 100530145 -23546027 + B1_Mur3 SINE Alu 1 149 0 6 1351 1678 280 98 83 chr9 100530145 100530522 -23545650 - L1M2 LINE L1 -1951 4192 3844 6 1351 2788 52 24 3 chr9 100530665 100531048 -23545124 + MTB LTR MaLR 6 396 0 6 1351 7457 76 24 70 chr9 100531048 100532198 -23543974 + MTB-int LTR MaLR 1 1098 0 6 168 3246 51 18 0 chr9 100532198 100532591 -23543581 + MTB LTR MaLR 1 400 0 6 1352 593 306 20 5 chr9 100532807 100533007 -23543165 - MLT1B LTR MaLR 0 390 188 6 1352 453 116 0 0 chr9 100533027 100533096 -23543076 + (TCC)n Simple_repeat Simple_repeat 1 69 0 7 1352 243 0 0 0 chr9 100533259 100533286 -23542886 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1352 1250 48 0 0 chr9 100533286 100533433 -23542739 - B1_Mus2 SINE Alu 0 147 1 7 1352 266 236 100 11 chr9 100533668 100533758 -23542414 - B1_Mur2 SINE Alu -21 128 31 7 1352 478 244 8 16 chr9 100534252 100534377 -23541795 - ID_B1 SINE B4 -9 215 92 7 1352 270 295 0 0 chr9 100534308 100534386 -23541786 - PB1D10 SINE Alu -38 79 2 7 1352 426 85 0 0 chr9 100534476 100534535 -23541637 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1352 2482 67 27 3 chr9 100534782 100535114 -23541058 + L1_Mus3 LINE L1 6299 6638 0 7 1352 1428 224 64 32 chr9 100535394 100535620 -23540552 - RCHARR1 DNA MER1_type -1 973 738 7 1352 1142 68 0 14 chr9 100535620 100535768 -23540404 + B1_Mus1 SINE Alu 2 147 -1 7 1352 1428 224 64 32 chr9 100535768 100535979 -23540193 - RCHARR1 DNA MER1_type -237 737 522 7 1352 703 211 117 31 chr9 100535973 100535997 -23540175 - B3 SINE B2 -3 213 195 8 1352 234 0 0 0 chr9 100535997 100536023 -23540149 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1352 703 211 117 31 chr9 100536023 100536194 -23539978 - B3 SINE B2 -22 194 1 8 1352 1973 226 131 38 chr9 100536366 100536622 -23539550 - RCHARR1 DNA MER1_type -188 786 517 7 1352 301 247 78 0 chr9 100536622 100536699 -23539473 - ID4 SINE ID 0 83 1 8 1352 1973 226 131 38 chr9 100536699 100537159 -23539013 - RCHARR1 DNA MER1_type -458 516 3 7 1352 459 0 0 0 chr9 100537201 100537252 -23538920 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1352 4394 20 0 10 chr9 100537535 100538033 -23538139 - MT2_Mm LTR ERVL 0 493 1 8 1352 374 236 53 35 chr9 100538079 100538193 -23537979 - PB1D9 SINE Alu 0 120 5 8 1352 531 244 74 0 chr9 100538575 100538710 -23537462 + B3 SINE B2 9 153 -63 8 1352 429 20 0 0 chr9 100538710 100538760 -23537412 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1352 744 170 19 64 chr9 100538776 100538933 -23537239 + B1_Mur4 SINE Alu 1 150 0 8 1352 700 198 55 33 chr9 100539818 100540001 -23536171 - MTD LTR MaLR -8 411 225 8 1352 304 271 0 0 chr9 100540055 100540114 -23536058 - ID4 SINE ID -22 61 3 9 1352 279 297 62 52 chr9 100540184 100540234 -23535938 - RSINE1 SINE B4 -24 141 92 9 1352 1142 57 0 0 chr9 100540234 100540374 -23535798 + B1_Mus2 SINE Alu 5 144 -3 9 1352 279 297 62 52 chr9 100540374 100540419 -23535753 - RSINE1 SINE B4 -74 91 45 9 1352 1752 169 135 8 chr9 100540621 100541020 -23535152 - MT2A LTR ERVL -82 451 2 9 1352 414 262 19 0 chr9 100541133 100541236 -23534936 + PB1D7 SINE Alu 9 113 -7 9 1352 193 163 41 0 chr9 100541247 100541296 -23534876 + GA-rich Low_complexity Low_complexity 2 52 0 9 1352 294 29 0 0 chr9 100541515 100541550 -23534622 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1352 226 242 113 0 chr9 100541628 100541690 -23534482 + ID4_ SINE ID 2 70 -13 9 1352 200 56 83 0 chr9 100542455 100542491 -23533681 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1352 207 129 31 31 chr9 100544224 100544288 -23531884 + (CGG)n Simple_repeat Simple_repeat 2 65 0 9 1352 185 65 32 0 chr9 100544346 100544377 -23531795 + (CGGG)n Simple_repeat Simple_repeat 3 34 0 1 1352 32 81 0 0 chr9 100544377 100544451 -23531721 + GC_rich Low_complexity Low_complexity 1 74 0 1 1352 21 36 0 0 chr9 100544526 100544554 -23531618 + GC_rich Low_complexity Low_complexity 1 28 0 1 1352 22 80 0 0 chr9 100544572 100544622 -23531550 + GC_rich Low_complexity Low_complexity 1 50 0 1 1352 341 270 99 0 chr9 100545878 100545989 -23530183 - B1F1 SINE Alu -15 134 13 1 1352 392 260 0 30 chr9 100546025 100546124 -23530048 - PB1D7 SINE Alu 0 120 25 1 1352 27 0 0 0 chr9 100546449 100546476 -23529696 + AT_rich Low_complexity Low_complexity 1 27 0 1 1352 495 257 88 46 chr9 100546531 100546747 -23529425 - MLT1E LTR MaLR -360 293 69 1 1352 440 215 46 18 chr9 100546969 100547078 -23529094 - PB1D10 SINE Alu 0 117 6 1 1352 29 28 0 0 chr9 100547081 100547117 -23529055 + AT_rich Low_complexity Low_complexity 1 36 0 1 1352 491 245 166 0 chr9 100547705 100547844 -23528328 - RSINE1 SINE B4 -2 163 2 1 1352 22 35 0 0 chr9 100547849 100547878 -23528294 + AT_rich Low_complexity Low_complexity 1 29 0 1 1352 938 215 46 5 chr9 100548498 100548694 -23527478 + B3 SINE B2 1 204 -12 1 1352 489 256 51 29 chr9 100548711 100548848 -23527324 - B1F1 SINE Alu -5 144 5 1 1352 614 219 13 58 chr9 100548994 100549149 -23527023 - B1_Mur2 SINE Alu -1 148 1 1 1352 1088 157 47 5 chr9 100549180 100549372 -23526800 - B3 SINE B2 -16 200 1 1 1352 207 0 0 0 chr9 100549621 100549644 -23526528 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1352 317 321 12 0 chr9 100549695 100549776 -23526396 - PB1D10 SINE Alu -12 105 24 1 1352 1216 224 186 22 chr9 100549945 100550305 -23525867 + MTD LTR MaLR 1 419 0 1 1352 391 298 35 0 chr9 100550396 100550510 -23525662 - PB1D7 SINE Alu -1 119 2 1 1352 375 224 12 95 chr9 100550549 100550717 -23525455 - L1M5 LINE L1 -3196 2950 2797 1 1352 277 275 25 12 chr9 100550870 100550881 -23525291 - PB1D7 SINE Alu -21 99 18 1 1352 301 246 0 14 chr9 100550881 100550951 -23525221 - ID_B1 SINE B4 -57 167 99 1 1352 732 192 0 0 chr9 100551016 100551027 -23525145 + T-rich Low_complexity Low_complexity 141 151 0 1 1352 793 203 7 20 chr9 100551027 100551178 -23524994 - B1_Mur3 SINE Alu 0 149 1 1 1352 732 192 0 0 chr9 100551178 100551317 -23524855 + T-rich Low_complexity Low_complexity 2 140 0 1 1352 517 17 0 0 chr9 100551317 100551376 -23524796 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1352 549 0 0 0 chr9 100551376 100551437 -23524735 + (TTTCC)n Simple_repeat Simple_repeat 4 64 0 1 1352 444 261 258 11 chr9 100551469 100551647 -23524525 + ID_B1 SINE B4 3 224 0 1 1352 249 298 189 8 chr9 100551713 100551845 -23524327 - LTR40b LTR ERVL -27 435 280 1 1352 404 233 12 0 chr9 100551958 100552044 -23524128 + PB1D10 SINE Alu 3 89 -28 1 1352 290 312 116 31 chr9 100552629 100552758 -23523414 - B1F2 SINE Alu -8 141 2 1 1352 1171 75 0 0 chr9 100553121 100553268 -23522904 + B1_Mus1 SINE Alu 2 148 0 1 1352 180 0 0 0 chr9 100553268 100553288 -23522884 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1352 288 149 0 0 chr9 100553304 100553351 -23522821 - ORR1A3 LTR MaLR -8 338 292 1 1352 3887 55 28 4 chr9 100553361 100553870 -23522302 - L1_Mus3 LINE L1 0 6638 6118 1 1352 1734 109 10 69 chr9 100553879 100554185 -23521987 - ORR1A3 LTR MaLR -38 288 1 1 1352 383 228 33 50 chr9 100554600 100554720 -23521452 - B3A SINE B2 -6 192 75 1 1352 591 258 98 53 chr9 100555225 100555450 -23520722 - B4A SINE B4 0 292 58 1 1352 195 42 0 0 chr9 100555507 100555531 -23520641 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1 1352 452 356 36 20 chr9 100556387 100556582 -23519590 + MER20 DNA MER1_type 22 219 0 1 1352 359 333 31 93 chr9 100556855 100557080 -23519092 - MTEa LTR MaLR -168 211 1 1 1352 439 308 58 108 chr9 100557220 100557395 -23518777 - B4 SINE B4 -11 281 107 1 1352 306 0 0 0 chr9 100557395 100557429 -23518743 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1352 439 308 58 108 chr9 100557429 100557548 -23518624 - B4 SINE B4 -186 106 2 1 1352 329 248 157 8 chr9 100557673 100557807 -23518365 - Kanga1 DNA Tc2 -1204 541 388 1 1352 778 180 0 28 chr9 100558004 100558147 -23518025 - B1_Mur4 SINE Alu -8 142 4 1 1352 314 304 86 92 chr9 100558723 100558886 -23517286 - MamRep605 Unknown Unknown -245 631 470 1 1352 325 281 81 61 chr9 100559357 100559554 -23516618 - L1MB7 LINE L1 -18 6166 5966 1 1352 558 167 0 0 chr9 100559687 100559795 -23516377 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 1352 997 85 0 0 chr9 100559818 100559947 -23516225 - B1_Mus1 SINE Alu -19 129 1 1 1352 276 364 18 26 chr9 100560090 100560203 -23515969 - PB1D10 SINE Alu -5 112 1 1 1352 329 316 45 82 chr9 100560284 100560529 -23515643 - L1M4c LINE L1 -1732 4650 4415 1 1352 695 144 30 46 chr9 100560645 100560776 -23515396 - B1_Mur1 SINE Alu 0 149 21 1 1352 605 234 115 40 chr9 100560828 100560975 -23515197 - L1M4c LINE L1 -2202 4174 4015 1 1352 429 239 69 76 chr9 100560975 100561120 -23515052 - B1F2 SINE Alu -4 145 2 1 1352 605 234 115 40 chr9 100561120 100561293 -23514879 - L1M4c LINE L1 -2362 4014 3830 1 1352 1383 70 16 11 chr9 100561339 100561528 -23514644 + B2_Mm2 SINE B2 2 191 -4 1 1352 221 245 0 70 chr9 100561534 100561591 -23514581 - PB1D9 SINE Alu 0 120 68 1 1352 1587 188 71 29 chr9 100561591 100561942 -23514230 - ORR1D1 LTR MaLR -8 366 1 1 1352 331 344 31 0 chr9 100561942 100562037 -23514135 - B1F2 SINE Alu -51 98 1 1 1352 226 297 49 49 chr9 100562041 100562204 -23513968 - L1M4c LINE L1 -2535 3841 3679 1 1352 1073 79 0 0 chr9 100562226 100562366 -23513806 + B1_Mus1 SINE Alu 1 140 -8 1 1352 198 0 0 0 chr9 100562371 100562393 -23513779 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1 1352 302 0 26 0 chr9 100562416 100562454 -23513718 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1352 253 0 54 0 chr9 100562471 100562508 -23513664 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1352 1170 42 7 0 chr9 100562508 100562651 -23513521 - B1_Mm SINE Alu -2 145 2 1 1352 841 270 137 15 chr9 100562684 100563268 -23512904 - L1M4c LINE L1 -3233 3149 2495 1 1352 253 206 130 0 chr9 100563286 100563378 -23512794 - L1M4c LINE L1 -3947 2437 2334 1 1352 397 247 186 13 chr9 100563804 100563960 -23512212 - Tigger7 DNA MER2_type -6 2485 2303 1 1352 725 191 162 6 chr9 100564022 100564201 -23511971 - ORR1C1 LTR MaLR -8 370 164 1 1352 709 275 55 36 chr9 100564178 100564431 -23511741 - ORR1C1 LTR MaLR -115 259 2 1 1352 343 264 28 28 chr9 100564581 100564690 -23511482 - PB1D10 SINE Alu -5 112 4 1 1352 986 264 170 9 chr9 100564691 100565009 -23511163 - Tigger7 DNA MER2_type -2120 371 3 1 1352 238 321 62 27 chr9 100565323 100565435 -23510737 - MIRc SINE MIR -114 154 39 1 1352 213 321 0 0 chr9 100565596 100565649 -23510523 - ID4_ SINE ID -1 82 30 1 1352 543 250 0 9 chr9 100565678 100565791 -23510381 + PB1D9 SINE Alu 1 112 -8 1 1352 474 18 0 0 chr9 100565857 100565912 -23510260 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1352 285 268 14 14 chr9 100565939 100566011 -23510161 - PB1D10 SINE Alu -20 97 26 1 1352 395 239 0 11 chr9 100566040 100566133 -23510039 + MTD LTR MaLR 34 125 -294 1 1352 7763 64 7 10 chr9 100566133 100567475 -23508697 - L1_Mus1 LINE L1 -10 6557 5222 1 1352 817 206 229 20 chr9 100567475 100567727 -23508445 + MTD LTR MaLR 103 407 -14 1 1352 212 77 0 25 chr9 100568346 100568386 -23507786 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1352 1154 54 7 0 chr9 100568387 100568534 -23507638 - B1_Mus1 SINE Alu 0 148 1 1 1352 21 0 0 0 chr9 100569409 100569430 -23506742 + AT_rich Low_complexity Low_complexity 1 21 0 1 1352 267 336 17 78 chr9 100569842 100569958 -23506214 + MLT1C LTR MaLR 289 397 -70 1 1352 202 29 0 54 chr9 100569970 100570007 -23506165 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1352 292 290 110 0 chr9 100570073 100570173 -23505999 - ID_B1 SINE B4 -112 112 2 1 1352 761 215 31 31 chr9 100570327 100570352 -23505820 - B3A SINE B2 -6 192 166 1 1352 240 35 0 0 chr9 100570352 100570381 -23505791 + (TATG)n Simple_repeat Simple_repeat 3 31 0 1 1352 761 215 31 31 chr9 100570381 100570547 -23505625 - B3A SINE B2 -33 165 1 1 1352 268 314 22 34 chr9 100571084 100571173 -23504999 - ID_B1 SINE B4 -5 219 132 1 1352 210 381 0 71 chr9 100571173 100571205 -23504967 - PB1D7 SINE Alu -1 103 2 1 1352 231 114 0 0 chr9 100571575 100571610 -23504562 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 1 1352 180 0 0 0 chr9 100571689 100571709 -23504463 + (TAA)n Simple_repeat Simple_repeat 3 22 0 1 1352 1451 173 21 39 chr9 100571762 100572045 -23504127 - ORR1B1 LTR MaLR -8 386 109 1 1352 710 113 8 8 chr9 100572045 100572170 -23504002 + Lx LINE L1 6530 6654 0 1 1352 214 171 24 0 chr9 100572328 100572369 -23503803 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1352 231 114 0 0 chr9 100572455 100572490 -23503682 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1 1352 907 176 0 7 chr9 100572496 100572645 -23503527 - B1_Mur4 SINE Alu -1 149 2 1 1352 329 257 65 28 chr9 100572647 100572755 -23503417 - B1F SINE Alu -4 145 34 1 1352 549 220 17 8 chr9 100572996 100573115 -23503057 - PB1D9 SINE Alu 0 120 1 1 1352 390 270 35 35 chr9 100573347 100573489 -23502683 + B1F SINE Alu 1 142 -7 1 1352 1240 138 31 48 chr9 100573640 100573869 -23502303 + URR1B DNA MER1_type 1 225 0 1 1352 651 248 61 47 chr9 100574501 100574713 -23501459 + B3 SINE B2 2 216 0 1 1352 245 339 0 0 chr9 100574749 100574811 -23501361 + MTD LTR MaLR 51 112 -307 1 1352 434 103 0 44 chr9 100574811 100574902 -23501270 + (TCCCC)n Simple_repeat Simple_repeat 5 91 0 1 1352 1063 67 0 0 chr9 100574950 100575085 -23501087 - B1_Mus1 SINE Alu -13 135 1 1 1352 347 227 13 0 chr9 100575086 100575161 -23501011 + MTD LTR MaLR 107 182 -237 1 1352 229 197 242 0 chr9 100575159 100575225 -23500947 + MTD LTR MaLR 317 398 -23 1 1352 412 282 135 42 chr9 100575995 100576210 -23499962 + B4A SINE B4 3 237 -55 1 1352 564 189 129 38 chr9 100576251 100576383 -23499789 + B1_Mus1 SINE Alu 3 146 -2 1 1352 363 211 75 32 chr9 100576434 100576527 -23499645 - MER5B DNA MER1_type -9 169 73 1 1352 360 255 23 19 chr9 100576541 100576670 -23499502 - MER5A1 DNA MER1_type -30 136 9 2 1352 180 0 0 0 chr9 100576781 100576801 -23499371 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 2 1352 1120 102 17 0 chr9 100576801 100576978 -23499194 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1352 569 256 6 0 chr9 100576979 100577147 -23499025 + CT-rich Low_complexity Low_complexity 1 169 0 2 1352 1217 104 49 0 chr9 100577147 100577330 -23498842 - B2_Mm2 SINE B2 -2 193 2 2 1352 263 234 115 18 chr9 100577330 100577443 -23498729 - L1MC LINE L1 -468 5865 5742 2 1352 387 0 0 0 chr9 100577443 100577486 -23498686 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1352 664 104 37 9 chr9 100577486 100577593 -23498579 - PB1D9 SINE Alu -9 111 2 2 1352 264 242 0 0 chr9 100577594 100577656 -23498516 - L1MD LINE L1 -2243 5752 5691 2 1352 669 236 126 27 chr9 100577714 100577895 -23498277 + MTD LTR MaLR 11 209 -210 2 1352 625 222 8 0 chr9 100577895 100578012 -23498160 + B3 SINE B2 1 118 -98 2 1352 323 267 174 32 chr9 100578311 100578466 -23497706 + L1M2 LINE L1 4116 4292 -1851 2 1352 534 145 35 48 chr9 100578488 100578633 -23497539 + RMER17B LTR ERVK 312 454 -504 2 1352 944 107 36 0 chr9 100579262 100579402 -23496770 - B1_Mus1 SINE Alu -2 146 2 2 1352 1521 90 4 13 chr9 100579410 100579635 -23496537 - Lx2 LINE L1 0 6997 6775 2 1352 4530 123 126 4 chr9 100579635 100580410 -23495762 - Lx2 LINE L1 -354 6643 5776 2 1352 247 328 15 0 chr9 100580749 100580816 -23495356 - B4 SINE B4 -3 289 222 2 1352 495 0 0 0 chr9 100580817 100580872 -23495300 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2 1352 434 368 101 27 chr9 100581052 100581499 -23494673 + LTR16B1 LTR ERVL 1 480 0 2 1352 26 0 0 0 chr9 100581500 100581526 -23494646 + AT_rich Low_complexity Low_complexity 1 26 0 2 1352 21 71 0 0 chr9 100581806 100581848 -23494324 + AT_rich Low_complexity Low_complexity 1 42 0 2 1352 394 342 43 0 chr9 100582107 100582224 -23493948 + ID_B1 SINE B4 82 203 -21 2 1352 186 264 35 86 chr9 100582394 100582452 -23493720 + MIR SINE MIR 71 125 -137 2 1352 803 130 53 0 chr9 100582524 100582655 -23493517 + B1_Mus1 SINE Alu 2 139 -9 2 1352 604 347 67 33 chr9 100582732 100583093 -23493079 - MLT1E2 LTR MaLR -153 474 102 2 1352 222 62 0 0 chr9 100583226 100583258 -23492914 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1352 1158 55 0 7 chr9 100583260 100583407 -23492765 - B1_Mm SINE Alu 0 147 2 2 1352 497 333 119 52 chr9 100583431 100583700 -23492472 - MLT1E2-int LTR MaLR -111 1260 974 2 1352 207 326 189 0 chr9 100583704 100583836 -23492336 + MIRb SINE MIR 112 268 0 2 1352 208 0 30 30 chr9 100584001 100584034 -23492138 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1352 275 304 188 22 chr9 100584213 100584351 -23491821 + MIR SINE MIR 11 171 -91 2 1352 183 42 0 0 chr9 100585558 100585582 -23490590 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1352 575 105 168 0 chr9 100585582 100585677 -23490495 - B1_Mus2 SINE Alu -9 111 1 2 1352 444 141 0 115 chr9 100585595 100585691 -23490481 - MT2B LTR ERVL -362 239 155 2 1352 629 279 0 7 chr9 100586974 100587115 -23489057 + RSINE1 SINE B4 6 145 -20 2 1352 756 100 0 0 chr9 100587300 100587410 -23488762 + B1_Mus1 SINE Alu 5 114 -34 2 1352 362 220 7 14 chr9 100587617 100587701 -23488471 + PB1D10 SINE Alu 17 103 -17 2 1352 239 192 101 76 chr9 100587701 100587780 -23488392 + ID4_ SINE ID 2 82 -1 2 1352 660 185 131 0 chr9 100588302 100588432 -23487740 - B1_Mus1 SINE Alu -1 147 1 2 1352 537 276 57 94 chr9 100588435 100588627 -23487545 - B3A SINE B2 -5 193 9 2 1352 836 225 100 16 chr9 100588761 100588951 -23487221 + B3 SINE B2 11 216 0 2 1352 1089 240 152 43 chr9 100589039 100589164 -23487008 - MTD LTR MaLR 0 419 255 2 1352 1169 36 0 0 chr9 100589164 100589302 -23486870 + B1_Mus1 SINE Alu 2 139 -9 2 1352 273 57 0 0 chr9 100589302 100589337 -23486835 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1352 1089 240 152 43 chr9 100589337 100589584 -23486588 - MTD LTR MaLR -165 254 6 2 1352 1804 266 49 50 chr9 100589685 100590321 -23485851 - Lx9 LINE L1 -170 7474 6840 2 1352 887 157 69 11 chr9 100590328 100590502 -23485670 + URR1A DNA MER1_type 37 220 -6 2 1352 1978 259 91 34 chr9 100590507 100592251 -23483921 - Lx9 LINE L1 -798 6846 5319 2 1352 762 183 219 17 chr9 100592251 100592429 -23483743 + B3 SINE B2 1 214 -2 2 1352 1129 239 138 40 chr9 100592429 100592463 -23483709 - Lx9 LINE L1 -3708 2139 2104 2 1352 789 255 50 50 chr9 100592476 100592736 -23483436 - Lx9 LINE L1 -6485 1123 864 2 1352 385 250 0 12 chr9 100592915 100593000 -23483172 - ID_B1 SINE B4 -37 187 104 2 1352 385 238 71 12 chr9 100592926 100593011 -23483161 - PB1D7 SINE Alu -21 99 10 2 1352 30 0 0 0 chr9 100593666 100593696 -23482476 + AT_rich Low_complexity Low_complexity 1 30 0 2 1352 350 317 72 72 chr9 100593697 100593850 -23482322 - RSINE1 SINE B4 -7 158 6 2 1352 627 303 54 6 chr9 100593972 100594138 -23482034 - B3A SINE B2 -24 174 1 2 1352 671 325 52 5 chr9 100594219 100594429 -23481743 - B4A SINE B4 -6 286 67 2 1352 306 320 0 0 chr9 100594580 100594655 -23481517 - B4A SINE B4 -215 77 3 2 1352 2332 159 45 2 chr9 100594968 100595372 -23480800 - MTC LTR MaLR 0 421 1 2 1352 275 318 46 23 chr9 100595572 100595659 -23480513 - B1F2 SINE Alu -60 89 1 2 1352 494 261 35 7 chr9 100597083 100597226 -23478946 + RSINE1 SINE B4 5 151 -14 2 1352 185 189 53 26 chr9 100597424 100597462 -23478710 + L2c LINE L2 3110 3148 -239 2 1352 305 324 54 34 chr9 100597708 100597855 -23478317 + MLT1C LTR MaLR 33 182 -285 2 1352 413 291 92 22 chr9 100597896 100598031 -23478141 - B3A SINE B2 -3 195 53 2 1352 315 350 35 35 chr9 100598205 100598350 -23477822 - B4A SINE B4 -116 176 32 2 1352 462 203 164 0 chr9 100599039 100599167 -23477005 - L1MA6 LINE L1 -32 6268 6120 2 1352 1605 22 0 0 chr9 100599177 100599361 -23476811 + B2_Mm1a SINE B2 1 184 -9 2 1352 471 272 251 9 chr9 100599397 100599716 -23476456 - L1M1 LINE L1 -501 5799 5404 2 1352 209 195 0 0 chr9 100599939 100599980 -23476192 + CT-rich Low_complexity Low_complexity 4 44 0 2 1352 519 205 172 0 chr9 100599981 100600103 -23476069 - B1_Mus1 SINE Alu 0 148 6 2 1352 7646 55 14 5 chr9 100600204 100601404 -23474768 - L1Md_F2 LINE L1 0 6582 5374 2 1352 2415 271 64 30 chr9 100602490 100603364 -23472808 - RCHARR1 DNA MER1_type -68 906 3 2 1352 1175 68 0 0 chr9 100603370 100603518 -23472654 + B1_Mus1 SINE Alu 1 148 0 2 1352 486 152 0 0 chr9 100603518 100603610 -23472562 + A-rich Low_complexity Low_complexity 1 92 0 2 1352 1050 112 11 6 chr9 100604001 100604180 -23471992 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1352 341 198 12 0 chr9 100604182 100604263 -23471909 + CT-rich Low_complexity Low_complexity 1 82 0 2 1352 302 286 161 31 chr9 100604299 100604429 -23471743 - L1MEf LINE L1 -4731 1469 1323 2 1352 416 158 0 258 chr9 100604536 100604693 -23471479 + B1_Mur4 SINE Alu 1 113 -7 2 1352 1190 291 148 20 chr9 100604891 100605500 -23470672 - L1MC1 LINE L1 -18 6315 5629 2 1352 40 0 0 0 chr9 100605528 100605568 -23470604 + AT_rich Low_complexity Low_complexity 1 40 0 2 1352 369 0 0 0 chr9 100606156 100606197 -23469975 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1352 764 50 10 0 chr9 100606197 100606297 -23469875 + (GA)n Simple_repeat Simple_repeat 1 102 0 2 1352 918 310 78 17 chr9 100607656 100608014 -23468158 - MTE-int LTR MaLR -40 1540 1161 2 1352 254 366 65 35 chr9 100608073 100608305 -23467867 - MTE-int LTR MaLR -516 1064 826 2 1352 350 236 14 0 chr9 100609074 100609146 -23467026 - ID4_ SINE ID -7 76 4 2 1352 294 194 0 0 chr9 100609827 100609899 -23466273 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1352 833 254 42 5 chr9 100609960 100610150 -23466022 - B3 SINE B2 -13 203 7 2 1352 293 246 0 28 chr9 100611036 100611107 -23465065 + Lx8 LINE L1 7149 7217 -256 2 1352 461 306 121 69 chr9 100611897 100612375 -23463797 + MER63C DNA AcHobo 129 631 -299 2 1352 965 333 109 55 chr9 100613706 100614231 -23461941 - MER21B LTR ERV1 -27 836 284 2 1352 1982 182 41 0 chr9 100614621 100614984 -23461188 - ORR1C1 LTR MaLR 0 378 1 2 1352 1168 119 21 11 chr9 100615024 100615211 -23460961 - B2_Mm2 SINE B2 -5 190 2 2 1352 618 270 74 0 chr9 100616030 100616178 -23459994 - RSINE1 SINE B4 -4 161 3 2 1352 1153 300 90 67 chr9 100616495 100616901 -23459271 - L1MA5 LINE L1 -56 6244 5828 2 1352 1085 59 15 0 chr9 100616901 100617037 -23459135 + B1_Mm SINE Alu 1 138 -9 2 1352 1153 281 117 67 chr9 100617037 100618268 -23457904 - L1MA5 LINE L1 -473 5827 4526 2 1352 869 68 114 57 chr9 100618268 100618408 -23457764 - B1_Mus1 SINE Alu 0 148 1 2 1352 970 270 131 66 chr9 100618408 100618542 -23457630 - L1MA5 LINE L1 -1618 4525 4398 2 1352 741 194 15 15 chr9 100618686 100618822 -23457350 + B1_Mus2 SINE Alu 1 136 -11 2 1352 2484 326 87 51 chr9 100618931 100619054 -23457118 - Lx8 LINE L1 -215 7258 7138 2 1352 476 140 11 0 chr9 100619054 100619147 -23457025 + (ACTG)n Simple_repeat Simple_repeat 4 97 0 2 1352 2484 326 87 51 chr9 100619147 100619646 -23456526 - Lx8 LINE L1 -336 7137 6603 2 1352 1085 97 0 0 chr9 100619646 100619791 -23456381 - B1_Mus2 SINE Alu 0 147 3 2 1352 2484 304 86 42 chr9 100619791 100621034 -23455138 - Lx8 LINE L1 -871 6602 5296 2 1352 470 260 24 94 chr9 100621032 100621244 -23454928 - Lx2B LINE L1 -1 6999 6803 2 1352 16616 141 61 57 chr9 100621224 100624694 -23451478 - Lx2B LINE L1 -539 6461 2996 2 1352 1997 115 6 24 chr9 100624694 100625024 -23451148 - Lx LINE L1 0 6654 6331 2 1352 16616 140 70 52 chr9 100625024 100625663 -23450509 - Lx2B LINE L1 -2891 2995 2344 2 1352 1842 172 51 32 chr9 100625661 100626231 -23449941 - MusHAL1 LINE L1 -2453 900 312 2 1352 617 338 17 94 chr9 100626252 100626314 -23449858 - B4A SINE B4 -18 274 231 2 1352 579 209 87 29 chr9 100626314 100626452 -23449720 - B1_Mus1 SINE Alu -2 146 1 2 1352 617 338 17 94 chr9 100626452 100626686 -23449486 - B4A SINE B4 -62 230 1 2 1352 210 361 14 0 chr9 100626712 100626728 -23449444 - B4 SINE B4 -134 158 86 2 1352 227 304 0 0 chr9 100626728 100626784 -23449388 - B1F2 SINE Alu -93 56 1 2 1352 603 274 33 49 chr9 100626949 100627256 -23448916 - L1MA5 LINE L1 -2001 4142 3841 2 1352 676 171 42 8 chr9 100627375 100627493 -23448679 - B1_Mur3 SINE Alu -16 133 12 2 1352 481 244 64 48 chr9 100627543 100627668 -23448504 - ID_B1 SINE B4 -7 217 91 3 1352 306 261 0 11 chr9 100627680 100627769 -23448403 - L1MA5 LINE L1 -2670 3470 3383 2 1352 736 209 187 0 chr9 100627842 100628024 -23448148 - B3 SINE B2 0 216 1 3 1352 1583 315 97 74 chr9 100628165 100629306 -23446866 - Tigger1 DNA MER2_type -1 2417 1250 3 1352 1843 113 42 11 chr9 100629306 100629591 -23446581 + ORR1A2 LTR MaLR 1 294 -33 3 1352 1011 270 64 3 chr9 100629635 100629916 -23446256 - Tigger1 DNA MER2_type -1162 1256 959 3 1352 332 327 62 57 chr9 100629916 100630143 -23446029 + B4A SINE B4 3 230 -62 3 1352 300 27 0 0 chr9 100630607 100630644 -23445528 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1352 333 274 39 31 chr9 100630657 100630785 -23445387 - Tigger1 DNA MER2_type -1443 975 847 3 1352 261 329 35 146 chr9 100630900 100631071 -23445101 - B4A SINE B4 -109 183 32 3 1352 997 268 90 13 chr9 100631084 100631474 -23444698 - Tigger1 DNA MER2_type -1569 849 430 3 1352 536 242 92 0 chr9 100631449 100631569 -23444603 + B1_Mur1 SINE Alu 19 149 0 3 1352 291 338 144 43 chr9 100631661 100631800 -23444372 - Tigger1 DNA MER2_type -1934 484 332 3 1352 367 237 136 38 chr9 100631837 100632021 -23444151 - Tigger1 DNA MER2_type -2169 249 48 3 1352 1930 175 113 5 chr9 100632169 100632549 -23443623 + MTC LTR MaLR 1 421 0 3 1352 344 98 20 0 chr9 100632650 100632701 -23443471 - ORR1A3 LTR MaLR 0 326 275 3 1352 297 0 0 0 chr9 100632704 100632737 -23443435 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1352 21 0 0 0 chr9 100632991 100633012 -23443160 + AT_rich Low_complexity Low_complexity 1 21 0 3 1352 3622 108 62 2 chr9 100633022 100633572 -23442600 - Lx3B LINE L1 -5 6968 6386 3 1352 24 0 0 0 chr9 100634043 100634067 -23442105 + AT_rich Low_complexity Low_complexity 1 24 0 3 1352 538 244 30 30 chr9 100634074 100634205 -23441967 + RSINE1 SINE B4 4 134 -31 3 1352 791 192 105 33 chr9 100635076 100635286 -23440886 + URR1B DNA MER1_type 1 225 0 3 1352 1168 136 21 0 chr9 100636643 100636834 -23439338 - Lx4A LINE L1 -317 6741 6547 3 1352 1541 165 48 26 chr9 100636834 100637145 -23439027 + Lx4A LINE L1 6738 7055 -3 3 1352 490 276 60 129 chr9 100637610 100637843 -23438329 + ID_B1 SINE B4 2 218 -6 3 1352 220 291 89 0 chr9 100637913 100637992 -23438180 + L2a LINE L2 3339 3424 -2 3 1352 204 67 0 0 chr9 100637994 100638024 -23438148 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1352 534 75 0 0 chr9 100638967 100639047 -23437125 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 1352 27 0 0 0 chr9 100639298 100639325 -23436847 + AT_rich Low_complexity Low_complexity 1 27 0 3 1352 253 296 80 0 chr9 100639515 100639603 -23436569 + B1F1 SINE Alu 2 96 -53 3 1352 662 218 49 14 chr9 100639656 100639800 -23436372 + B1_Mur4 SINE Alu 1 149 -1 3 1352 31 58 0 0 chr9 100640432 100640484 -23435688 + AT_rich Low_complexity Low_complexity 1 52 0 3 1352 423 286 214 0 chr9 100640619 100640759 -23435413 - B3A SINE B2 -27 171 2 3 1352 2953 58 7 27 chr9 100640978 100641382 -23434790 - MTA_Mm LTR MaLR 0 396 1 3 1352 327 337 83 48 chr9 100642263 100642610 -23433562 + MTEa LTR MaLR 7 380 -14 3 1352 408 331 8 38 chr9 100643227 100643359 -23432813 + RSINE1 SINE B4 4 131 -34 3 1352 644 205 25 0 chr9 100644012 100644134 -23432038 - B1_Mur4 SINE Alu -7 143 19 3 1352 756 97 0 17 chr9 100644810 100644925 -23431247 - B1_Mus1 SINE Alu -8 140 28 3 1352 222 336 9 80 chr9 100645269 100645382 -23430790 + PB1D10 SINE Alu 6 110 -7 3 1352 186 103 0 0 chr9 100645384 100645413 -23430759 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 1352 219 69 0 0 chr9 100645784 100645813 -23430359 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 1352 7937 122 91 6 chr9 100647130 100648444 -23427728 - Lx4A LINE L1 -1 7057 5633 3 1352 2015 170 63 11 chr9 100648750 100649131 -23427041 + MTC LTR MaLR 1 401 -20 3 1352 202 139 28 0 chr9 100649150 100649186 -23426986 + (TGG)n Simple_repeat Simple_repeat 3 39 0 3 1352 494 312 143 14 chr9 100649729 100650009 -23426163 - Lx8 LINE L1 -302 7171 6856 3 1352 21 0 0 0 chr9 100650056 100650077 -23426095 + AT_rich Low_complexity Low_complexity 1 21 0 3 1352 280 274 8 40 chr9 100650103 100650186 -23425986 + B3 SINE B2 1 81 -112 3 1352 520 320 54 15 chr9 100650309 100650512 -23425660 - LTR41B LTR ERVL -65 693 483 3 1352 309 376 10 0 chr9 100651040 100651141 -23425031 - B1F1 SINE Alu -47 102 1 3 1352 22 0 0 0 chr9 100651981 100652003 -23424169 + AT_rich Low_complexity Low_complexity 1 22 0 3 1352 374 322 98 36 chr9 100652350 100652769 -23423403 - L1M5 LINE L1 -3494 2652 2208 3 1352 416 291 29 0 chr9 100652905 100653008 -23423164 - B1F SINE Alu -36 113 8 3 1352 3738 195 74 55 chr9 100653046 100653897 -23422275 - Lx5 LINE L1 -3 7047 6181 3 1352 5144 131 33 17 chr9 100653890 100654985 -23421187 - Lx5 LINE L1 -996 6054 4924 3 1352 453 81 0 0 chr9 100655279 100655341 -23420831 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 3 1352 946 95 0 14 chr9 100655347 100655486 -23420686 - B1_Mus1 SINE Alu 0 148 12 3 1352 264 245 89 54 chr9 100656391 100656503 -23419669 - Lx9 LINE L1 -10 7634 7519 3 1352 536 262 32 0 chr9 100658546 100658672 -23417500 + MTEb LTR MaLR 1 130 -249 3 1352 680 53 15 2 chr9 100658799 100658915 -23417257 + B1_Mus1 SINE Alu 2 120 0 3 1352 666 213 135 14 chr9 100658989 100659270 -23416902 - L1_Mur3 LINE L1 -4236 1644 1330 3 1352 237 65 0 0 chr9 100659473 100659504 -23416668 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1352 1040 145 0 0 chr9 100659506 100659665 -23416507 - B2_Mm2 SINE B2 -35 160 2 3 1352 308 151 0 0 chr9 100659665 100659718 -23416454 - Lx7 LINE L1 -7 7689 7637 3 1352 22 0 0 0 chr9 100659756 100659778 -23416394 + AT_rich Low_complexity Low_complexity 1 22 0 3 1352 1159 56 0 0 chr9 100660555 100660699 -23415473 + B1_Mus1 SINE Alu 5 148 0 3 1352 27 49 0 0 chr9 100661016 100661057 -23415115 + AT_rich Low_complexity Low_complexity 1 41 0 3 1352 672 313 78 39 chr9 100662557 100663093 -23413079 + L1MA5A LINE L1 5302 5858 -439 3 1353 1058 44 0 14 chr9 100663628 100663766 -23412406 - B1_Mus1 SINE Alu 0 148 13 3 1353 408 219 0 118 chr9 100663665 100663784 -23412388 - MT2B LTR ERVL -337 264 160 3 1353 419 307 43 49 chr9 100663851 100664036 -23412136 - ORR1E LTR MaLR -170 189 6 3 1353 409 321 235 15 chr9 100664018 100664406 -23411766 - ORR1E-int LTR MaLR -31 1549 1076 3 1353 639 353 83 35 chr9 100664476 100664872 -23411300 - ORR1E-int LTR MaLR -462 1118 704 3 1353 375 370 35 56 chr9 100665422 100665654 -23410518 - ORR1E LTR MaLR -122 237 11 3 1353 2016 185 5 18 chr9 100665737 100666134 -23410038 - Lx2 LINE L1 -3 7005 6614 3 1353 543 232 55 27 chr9 100666137 100666283 -23409889 - RLTR9E LTR ERVK -24 385 236 3 1353 267 75 25 0 chr9 100666374 100666414 -23409758 - RLTR9E LTR ERVK -327 41 1 3 1353 7712 168 32 11 chr9 100666414 100668613 -23407559 - Lx2 LINE L1 -372 6625 4378 3 1353 269 75 0 0 chr9 100668611 100668651 -23407521 + L1_Mm LINE L1 4343 4382 -1501 3 1353 413 333 29 29 chr9 100668651 100668790 -23407382 + B3 SINE B2 53 191 -25 3 1353 192 212 0 0 chr9 100669101 100669134 -23407038 + MIR SINE MIR 117 149 -59 3 1353 198 0 0 0 chr9 100669408 100669430 -23406742 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 3 1353 294 29 0 0 chr9 100669676 100669711 -23406461 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1353 517 342 45 13 chr9 100669984 100670141 -23406031 + RSINE1 SINE B4 1 162 -3 3 1353 1471 54 21 0 chr9 100670554 100670740 -23405432 + B2_Mm1t SINE B2 2 191 -2 3 1353 1216 55 0 0 chr9 100671621 100671767 -23404405 - B1_Mus1 SINE Alu -1 147 2 3 1353 2912 78 13 5 chr9 100672110 100672507 -23403665 - MTB LTR MaLR 0 400 1 3 1353 213 135 58 0 chr9 100673032 100673084 -23403088 + A-rich Low_complexity Low_complexity 5 59 0 3 1353 387 243 178 0 chr9 100673311 100673418 -23402754 - B1_Mur1 SINE Alu -23 126 1 3 1353 228 225 41 27 chr9 100673456 100673529 -23402643 + (TATG)n Simple_repeat Simple_repeat 2 75 0 3 1353 361 359 28 21 chr9 100673532 100673551 -23402621 - RSINE1 SINE B4 -2 163 145 3 1353 216 0 0 0 chr9 100673551 100673575 -23402597 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1353 361 359 28 21 chr9 100673575 100673700 -23402472 - RSINE1 SINE B4 -21 144 18 3 1353 24 0 0 0 chr9 100673796 100673820 -23402352 + AT_rich Low_complexity Low_complexity 1 24 0 3 1353 787 348 28 24 chr9 100674976 100675265 -23400907 + B4A SINE B4 2 291 -1 3 1353 283 363 69 23 chr9 100675386 100675561 -23400611 - MLT1F LTR MaLR -42 506 324 3 1353 207 0 0 0 chr9 100675884 100675907 -23400265 + (TATG)n Simple_repeat Simple_repeat 2 24 0 3 1353 427 280 25 68 chr9 100675935 100676096 -23400076 - RSINE1 SINE B4 -9 156 3 3 1353 682 321 27 11 chr9 100676240 100676426 -23399746 - ID_B1 SINE B4 -13 211 23 3 1353 786 299 10 5 chr9 100676825 100677033 -23399139 + B3 SINE B2 1 209 -7 3 1353 2843 80 34 3 chr9 100677648 100678036 -23398136 - MTB LTR MaLR 0 400 1 3 1353 21 57 0 0 chr9 100678165 100678200 -23397972 + AT_rich Low_complexity Low_complexity 1 35 0 3 1353 21 0 0 0 chr9 100679315 100679336 -23396836 + AT_rich Low_complexity Low_complexity 1 21 0 3 1353 683 193 20 7 chr9 100679404 100679550 -23396622 + URR1A DNA MER1_type 79 226 0 3 1353 250 318 111 22 chr9 100679874 100679964 -23396208 - B1F1 SINE Alu -51 98 1 3 1353 485 326 20 7 chr9 100679964 100680044 -23396128 - B4 SINE B4 -205 87 6 3 1353 490 312 7 0 chr9 100680218 100680362 -23395810 + B1_Mur1 SINE Alu 5 149 0 3 1353 227 173 0 19 chr9 100681474 100681527 -23394645 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 3 1353 315 339 104 0 chr9 100681588 100681703 -23394469 - B1F SINE Alu -21 128 2 3 1353 237 132 0 0 chr9 100682053 100682091 -23394081 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 3 1353 1998 269 127 20 chr9 100682899 100683615 -23392557 - Lx7 LINE L1 0 7696 6904 3 1353 772 279 125 70 chr9 100683887 100684319 -23391853 - Lx9 LINE L1 -16 7628 7149 3 1353 1082 226 256 92 chr9 100684319 100684360 -23391812 - MT2A LTR ERVL 0 533 490 3 1353 243 0 0 0 chr9 100684360 100684387 -23391785 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 3 1353 1082 226 256 92 chr9 100684387 100684803 -23391369 - MT2A LTR ERVL -44 489 1 3 1353 772 279 125 70 chr9 100684803 100685009 -23391163 - Lx9 LINE L1 -496 7148 6955 3 1353 345 320 115 0 chr9 100686165 100686287 -23389885 + RSINE1 SINE B4 11 146 -19 4 1353 1351 72 39 0 chr9 100686483 100686663 -23389509 + B2_Mm2 SINE B2 2 188 -7 4 1353 595 239 123 0 chr9 100687357 100687487 -23388685 - MTC LTR MaLR -275 146 1 4 1353 2450 224 16 2 chr9 100687488 100687997 -23388175 - Lx6 LINE L1 -566 6894 6379 4 1353 2266 212 52 39 chr9 100687990 100688988 -23387184 - Lx7 LINE L1 -1391 6305 5288 3 1353 13759 163 89 47 chr9 100688995 100690547 -23385625 - Lx7 LINE L1 -1197 4683 3130 3 1353 1112 61 0 13 chr9 100690547 100690697 -23385475 - B1_Mus1 SINE Alu 0 148 1 4 1353 13759 163 89 47 chr9 100690697 100691849 -23384323 - Lx7 LINE L1 -2751 3129 1910 3 1353 459 0 0 0 chr9 100691849 100691900 -23384272 + (TTTTG)n Simple_repeat Simple_repeat 5 55 0 4 1353 13759 180 112 27 chr9 100691900 100693352 -23382820 - Lx7 LINE L1 -3971 1909 303 3 1353 730 275 122 57 chr9 100693740 100694226 -23381946 - RMER4B LTR ERVK -11 574 18 4 1353 377 344 39 39 chr9 100695381 100695584 -23380588 - MTE-int LTR MaLR -1233 347 145 4 1353 450 255 208 38 chr9 100696639 100696798 -23379374 - B3 SINE B2 -2 214 29 4 1353 275 282 182 0 chr9 100697365 100697384 -23378788 + B1F SINE Alu 1 130 -19 4 1353 304 264 143 0 chr9 100697384 100697475 -23378697 + ID_B1 SINE B4 102 205 -19 4 1353 584 327 24 5 chr9 100697954 100698163 -23378009 - B3 SINE B2 0 216 4 4 1353 717 276 8 36 chr9 100698318 100698566 -23377606 - RCHARR1 DNA MER1_type 0 974 734 4 1353 768 291 75 72 chr9 100698574 100698852 -23377320 + B4A SINE B4 5 283 -9 4 1353 695 233 49 16 chr9 100698915 100699098 -23377074 - RCHARR1 DNA MER1_type -229 745 557 4 1353 350 176 9 0 chr9 100699173 100699237 -23376935 - B2_Mm2 SINE B2 -102 114 47 4 1353 1088 126 23 6 chr9 100699304 100699479 -23376693 - B2_Mm1t SINE B2 -14 179 2 4 1353 679 237 7 0 chr9 100699486 100699621 -23376551 - B1_Mus2 SINE Alu -5 142 7 4 1353 276 333 60 0 chr9 100699548 100699632 -23376540 - B4A SINE B4 -125 167 79 4 1353 463 259 102 5 chr9 100699640 100699826 -23376346 - RCHARR1 DNA MER1_type -452 522 319 4 1353 1769 209 40 6 chr9 100699872 100700219 -23375953 - ORR1B2 LTR MaLR -8 359 1 4 1353 728 319 35 4 chr9 100700219 100700449 -23375723 - RCHARR1 DNA MER1_type -734 240 4 4 1353 692 308 67 59 chr9 100700689 100701079 -23375093 - MTE-int LTR MaLR -1103 477 85 4 1353 229 372 41 0 chr9 100701648 100701769 -23374403 - MLT1C LTR MaLR -230 237 112 4 1353 390 339 44 53 chr9 100701789 100701995 -23374177 + B3 SINE B2 5 208 -8 4 1353 413 308 117 56 chr9 100702340 100702536 -23373636 + Tigger5 DNA MER2_type 95 302 -2104 4 1353 322 255 68 10 chr9 100702546 100702649 -23373523 + Tigger5 DNA MER2_type 2187 2295 -111 4 1353 1099 75 0 0 chr9 100702912 100703059 -23373113 + B1_Mm SINE Alu 1 147 0 4 1353 290 274 47 23 chr9 100704588 100704674 -23371498 + RSINE1 SINE B4 45 132 -33 4 1353 4859 140 17 14 chr9 100704714 100705540 -23370632 - Lx4A LINE L1 -2 7056 6229 4 1353 180 0 0 0 chr9 100705587 100705607 -23370565 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1353 1092 56 28 0 chr9 100705607 100705750 -23370422 - B1_Mus2 SINE Alu 0 147 1 4 1353 1329 71 11 0 chr9 100705953 100706136 -23370036 - L1_Mm LINE L1 -2394 3489 3305 4 1353 528 230 35 29 chr9 100706153 100706323 -23369849 + L1M2 LINE L1 5438 5608 -692 4 1353 204 125 0 0 chr9 100706329 100706361 -23369811 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 4 1353 313 364 62 35 chr9 100706395 100706685 -23369487 + L1_Rod LINE L1 5532 5829 -18 4 1353 422 161 0 22 chr9 100706726 100706815 -23369357 + (CATA)n Simple_repeat Simple_repeat 2 88 0 4 1353 24 53 0 0 chr9 100707111 100707149 -23369023 + AT_rich Low_complexity Low_complexity 1 38 0 4 1353 510 208 75 5 chr9 100707175 100707346 -23368826 - Lx2 LINE L1 -118 6879 6772 4 1353 229 277 41 55 chr9 100707346 100707491 -23368681 - L1M2 LINE L1 -2586 3557 3415 4 1353 1446 58 32 0 chr9 100707708 100707897 -23368275 - B2_Mm2 SINE B2 0 195 1 4 1353 785 328 90 84 chr9 100708224 100709009 -23367163 - Lx8 LINE L1 -478 6995 6206 4 1353 2520 38 9 3 chr9 100709287 100709603 -23366569 + L1Md_F2 LINE L1 6265 6582 0 4 1353 452 275 6 36 chr9 100709610 100709776 -23366396 - Lx7 LINE L1 -1837 5859 5699 4 1353 24 32 0 0 chr9 100709998 100710029 -23366143 + AT_rich Low_complexity Low_complexity 1 31 0 4 1353 23 0 0 0 chr9 100710215 100710238 -23365934 + AT_rich Low_complexity Low_complexity 1 23 0 4 1353 236 304 142 52 chr9 100710239 100710832 -23365340 - L1M2 LINE L1 -3232 2911 2266 4 1353 21 0 0 0 chr9 100710893 100710914 -23365258 + AT_rich Low_complexity Low_complexity 1 21 0 4 1353 34355 74 6 1 chr9 100710929 100716627 -23359545 - L1Md_F2 LINE L1 -12 6570 844 4 1353 1650 148 0 0 chr9 100716629 100716912 -23359260 - L1Md_A LINE L1 -5455 1269 987 4 1353 693 0 0 0 chr9 100716983 100717060 -23359112 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1353 2849 139 95 2 chr9 100718146 100718681 -23357491 - ORR1A4-int LTR MaLR -563 1400 816 4 1353 393 100 0 0 chr9 100718683 100718743 -23357429 - ORR1A4 LTR MaLR -269 60 1 4 1353 210 105 0 0 chr9 100718883 100718921 -23357251 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1353 703 236 0 0 chr9 100719081 100719225 -23356947 - B1_Mur2 SINE Alu -1 148 5 4 1353 526 294 277 26 chr9 100719253 100719684 -23356488 - Lx8 LINE L1 0 7473 6935 4 1353 590 241 0 0 chr9 100719697 100719809 -23356363 - MTE2b LTR MaLR -196 183 72 4 1353 445 286 18 18 chr9 100720085 100720199 -23355973 - PB1D10 SINE Alu -1 116 3 4 1353 254 259 132 7 chr9 100720201 100720337 -23355835 + L1MA6 LINE L1 6147 6299 -1 4 1353 252 0 0 0 chr9 100721964 100721992 -23354180 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1353 1142 58 0 0 chr9 100721992 100722131 -23354041 - B1_Mus1 SINE Alu -9 139 1 4 1353 7527 166 31 13 chr9 100722373 100724155 -23352017 - Lx2 LINE L1 0 6997 5185 4 1353 259 292 63 39 chr9 100724185 100724369 -23351803 - L1MEf LINE L1 -4616 2486 2240 4 1353 2942 66 0 0 chr9 100724369 100724747 -23351425 - L1_Mus1 LINE L1 -2 6565 6188 4 1353 256 292 63 39 chr9 100724747 100724893 -23351279 - L1MEf LINE L1 -5095 2239 2088 4 1353 596 234 66 62 chr9 100725437 100725593 -23350579 - L1M2 LINE L1 -743 5400 5233 4 1353 198 0 0 0 chr9 100725593 100725615 -23350557 + (TTG)n Simple_repeat Simple_repeat 2 23 0 4 1353 596 234 66 62 chr9 100725615 100725763 -23350409 - L1M2 LINE L1 -911 5232 5096 4 1353 462 271 76 68 chr9 100725807 100726044 -23350128 + L1M2 LINE L1 4785 5023 -1120 4 1353 349 305 90 26 chr9 100726044 100726199 -23349973 + RSINE1 SINE B4 1 165 0 4 1353 769 273 69 13 chr9 100726262 100726652 -23349520 - L1M2 LINE L1 -1661 4482 4071 4 1353 267 304 0 0 chr9 100726787 100726843 -23349329 + tRNA-Ala-GCA tRNA tRNA 12 67 -8 4 1353 1164 68 7 0 chr9 100727245 100727391 -23348781 - B1_Mus1 SINE Alu 0 148 2 4 1353 4162 48 0 19 chr9 100727642 100728170 -23348002 - L1Md_F2 LINE L1 0 6582 6065 4 1353 292 310 8 96 chr9 100729063 100729188 -23346984 - PB1D10 SINE Alu 0 117 4 4 1353 201 74 0 0 chr9 100729711 100729738 -23346434 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1353 21 71 0 0 chr9 100730194 100730236 -23345936 + AT_rich Low_complexity Low_complexity 1 42 0 4 1353 1120 238 203 3 chr9 100730651 100730996 -23345176 + MTD LTR MaLR 1 414 -5 4 1353 286 290 52 31 chr9 100731214 100731310 -23344862 - MLT1F2 LTR MaLR -27 533 436 4 1353 1375 129 86 162 chr9 100731357 100731665 -23344507 + RMER17C LTR ERVK 1 262 -148 4 1353 989 110 0 7 chr9 100731665 100731811 -23344361 - B1_Mus1 SINE Alu -2 146 2 4 1353 1375 129 86 162 chr9 100731811 100731946 -23344226 + RMER17C LTR ERVK 263 410 0 4 1353 216 273 14 57 chr9 100732630 100732700 -23343472 + B4A SINE B4 3 69 -223 4 1353 1496 52 5 25 chr9 100732898 100733094 -23343078 - B2_Mm1a SINE B2 0 193 2 4 1353 369 221 57 134 chr9 100733231 100733388 -23342784 - B1_Mur2 SINE Alu 0 149 5 4 1353 246 32 0 0 chr9 100733391 100733422 -23342750 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1353 596 297 21 46 chr9 100733768 100733962 -23342210 - B3 SINE B2 -1 215 27 4 1353 252 318 154 8 chr9 100734344 100734474 -23341698 + RSINE1 SINE B4 3 151 -14 4 1353 26 50 0 0 chr9 100734494 100734534 -23341638 + AT_rich Low_complexity Low_complexity 1 40 0 4 1353 496 316 75 33 chr9 100734534 100734747 -23341425 + ID_B1 SINE B4 2 223 -1 4 1353 247 250 182 13 chr9 100735725 100735802 -23340370 + RSINE1 SINE B4 5 94 -71 4 1353 741 95 0 0 chr9 100735830 100735946 -23340226 + (CA)n Simple_repeat Simple_repeat 2 117 0 4 1353 852 298 5 0 chr9 100736586 100736794 -23339378 - B3 SINE B2 0 216 8 4 1353 401 287 18 91 chr9 100736863 100737028 -23339144 - B3A SINE B2 -35 163 11 4 1353 465 232 31 10 chr9 100736937 100737033 -23339139 - RSINE1 SINE B4 -61 104 7 4 1353 859 142 14 21 chr9 100737056 100737200 -23338972 - B1_Mur3 SINE Alu 0 149 7 4 1353 421 192 44 118 chr9 100737083 100737219 -23338953 - MT2B LTR ERVL -323 278 153 4 1353 24 0 0 0 chr9 100737304 100737328 -23338844 + AT_rich Low_complexity Low_complexity 1 24 0 4 1353 657 105 0 0 chr9 100738502 100738588 -23337584 + Lx LINE L1 6405 6490 -164 4 1353 2744 57 25 20 chr9 100738614 100739008 -23337164 + L1_Mus3 LINE L1 6243 6638 0 4 1353 29 28 0 0 chr9 100739011 100739047 -23337125 + AT_rich Low_complexity Low_complexity 1 36 0 4 1353 6954 32 19 0 chr9 100739449 100740279 -23335893 - L1Md_T LINE L1 0 6582 5737 4 1353 6662 55 0 9 chr9 100740279 100741967 -23334205 + L1Md_Gf LINE L1 311 2080 -3806 4 1353 2066 176 60 10 chr9 100741994 100742395 -23333777 - MTC LTR MaLR 0 421 1 4 1353 21 57 0 0 chr9 100742912 100742947 -23333225 + AT_rich Low_complexity Low_complexity 1 35 0 4 1353 237 178 22 0 chr9 100743223 100743268 -23332904 + U2 snRNA snRNA 1 46 -142 4 1353 34 24 0 0 chr9 100743484 100743525 -23332647 + AT_rich Low_complexity Low_complexity 1 41 0 4 1353 741 239 17 17 chr9 100743538 100743717 -23332455 - B3A SINE B2 -18 180 2 4 1353 930 71 8 0 chr9 100744469 100744595 -23331577 + B2_Mm2 SINE B2 35 161 -34 4 1353 1195 41 0 7 chr9 100744748 100744896 -23331276 - B1_Mus2 SINE Alu 0 147 1 4 1353 514 231 22 30 chr9 100745810 100745944 -23330228 - B1_Mur4 SINE Alu -13 137 5 5 1353 361 276 84 57 chr9 100746000 100746315 -23329857 - L1_Mur3 LINE L1 -3464 2679 2332 5 1353 216 167 0 0 chr9 100747135 100747183 -23328989 + GA-rich Low_complexity Low_complexity 1 48 0 5 1353 326 286 22 0 chr9 100747185 100747276 -23328896 + RSINE1 SINE B4 4 96 -69 5 1353 25 31 0 0 chr9 100747318 100747350 -23328822 + AT_rich Low_complexity Low_complexity 1 32 0 5 1353 183 220 0 0 chr9 100747427 100747477 -23328695 + T-rich Low_complexity Low_complexity 1 50 0 5 1353 252 59 0 0 chr9 100748441 100748475 -23327697 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1353 943 65 0 0 chr9 100748475 100748598 -23327574 - B1_Mus2 SINE Alu -12 135 13 5 1353 558 248 15 15 chr9 100748665 100748796 -23327376 + B1_Mur1 SINE Alu 17 147 -2 5 1353 521 209 27 9 chr9 100748849 100748960 -23327212 + PB1D9 SINE Alu 1 113 -7 5 1353 475 252 89 8 chr9 100749293 100749417 -23326755 - B1F SINE Alu 0 149 16 5 1353 21 0 0 0 chr9 100749704 100749725 -23326447 + AT_rich Low_complexity Low_complexity 1 21 0 5 1353 301 224 40 0 chr9 100749989 100750065 -23326107 + PB1D9 SINE Alu 22 100 -20 5 1353 213 339 0 0 chr9 100750556 100750612 -23325560 - ID4_ SINE ID 0 83 28 5 1353 330 312 0 0 chr9 100750908 100750988 -23325184 + ID4_ SINE ID 1 80 -3 5 1353 1244 282 111 23 chr9 100751111 100751543 -23324629 - Lx7 LINE L1 -776 6920 6451 5 1353 1165 107 30 0 chr9 100751587 100751756 -23324416 - B2_Mm2 SINE B2 -21 174 1 5 1353 457 336 20 0 chr9 100752469 100752615 -23323557 + RSINE1 SINE B4 3 151 -14 5 1353 405 214 0 0 chr9 100752756 100752859 -23323313 + (CATA)n Simple_repeat Simple_repeat 2 104 0 5 1353 363 314 43 138 chr9 100752921 100753035 -23323137 - B3A SINE B2 -2 214 89 5 1353 925 76 107 0 chr9 100753035 100753166 -23323006 + B1_Mus1 SINE Alu 2 146 -2 5 1353 363 299 24 148 chr9 100753166 100753278 -23322894 - B3A SINE B2 -108 90 3 5 1353 298 338 172 48 chr9 100753698 100753925 -23322247 - LTR78 LTR ERV1 -542 762 508 5 1353 658 258 98 16 chr9 100754140 100754333 -23321839 + B3 SINE B2 2 210 -6 5 1353 189 277 0 60 chr9 100754540 100754590 -23321582 - L3b LINE CR1 -74 408 362 5 1353 457 311 33 7 chr9 100755533 100755685 -23320487 + RSINE1 SINE B4 2 157 -8 5 1353 365 0 22 0 chr9 100755706 100755751 -23320421 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 5 1353 396 0 0 0 chr9 100756943 100756987 -23319185 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1353 338 241 43 19 chr9 100757462 100757623 -23318549 + (TA)n Simple_repeat Simple_repeat 2 166 0 5 1353 402 240 39 20 chr9 100757985 100758087 -23318085 + PB1 SINE Alu 22 125 -2 5 1353 10402 236 84 65 chr9 100758254 100759320 -23316852 - Lx9 LINE L1 -1216 6428 5199 5 1353 180 0 0 0 chr9 100759320 100759340 -23316832 + (TATG)n Simple_repeat Simple_repeat 4 23 0 5 1353 10402 212 77 68 chr9 100759340 100762271 -23313901 - Lx9 LINE L1 -649 5198 2229 5 1353 2257 80 6 22 chr9 100762286 100762607 -23313565 - L1_Mus2 LINE L1 -2 6564 6249 5 1353 3411 66 14 1 chr9 100762607 100763107 -23313065 + L1_Mus2 LINE L1 5428 5930 -636 5 1353 2519 203 114 49 chr9 100763103 100763812 -23312360 - Lx9 LINE L1 -3606 2241 1502 5 1353 2082 190 28 14 chr9 100763812 100764234 -23311938 - Lx2A1 LINE L1 -9 6999 6572 5 1353 2558 234 70 39 chr9 100764234 100765152 -23311020 - Lx9 LINE L1 -4346 1501 541 5 1353 1173 196 27 0 chr9 100765355 100765575 -23310597 - URR1A DNA MER1_type 0 226 1 5 1353 183 102 0 78 chr9 100765682 100765746 -23310426 + T-rich Low_complexity Low_complexity 3 61 0 5 1353 649 184 40 8 chr9 100765767 100765893 -23310279 - B1_Mus2 SINE Alu -1 146 17 5 1353 21 0 0 0 chr9 100766202 100766223 -23309949 + AT_rich Low_complexity Low_complexity 1 21 0 5 1353 288 320 82 10 chr9 100766314 100766412 -23309760 + PB1D10 SINE Alu 10 114 -3 5 1353 424 343 59 41 chr9 100766966 100767185 -23308987 + ID_B1 SINE B4 2 224 0 5 1353 700 240 7 40 chr9 100767037 100767189 -23308983 + B1_Mur4 SINE Alu 2 148 -2 5 1353 251 326 68 23 chr9 100767508 100767640 -23308532 + B1F1 SINE Alu 4 141 -8 5 1353 277 320 112 24 chr9 100768033 100768158 -23308014 - MER5A1 DNA MER1_type -30 136 1 5 1353 27 0 0 0 chr9 100768205 100768232 -23307940 + AT_rich Low_complexity Low_complexity 1 27 0 5 1353 1062 108 209 5 chr9 100768285 100768472 -23307700 + URR1A DNA MER1_type 1 225 -1 5 1353 490 256 24 36 chr9 100768324 100768490 -23307682 - CYRA11_Mm Unknown Y-chromosome -297 320 157 5 1353 3729 89 0 11 chr9 100768615 100769138 -23307034 + L1Md_F2 LINE L1 6049 6565 -17 5 1353 421 324 75 34 chr9 100770152 100770420 -23305752 - B4 SINE B4 -12 280 2 5 1353 1170 61 0 0 chr9 100770852 100770999 -23305173 - B1_Mus2 SINE Alu 0 147 1 5 1353 979 259 134 52 chr9 100771599 100771942 -23304230 - MTEa LTR MaLR -6 373 3 5 1353 3973 301 132 13 chr9 100771949 100773355 -23302817 - MTEa-int LTR MaLR -5 1575 2 5 1353 960 222 20 5 chr9 100773354 100773549 -23302623 - MTEa LTR MaLR 0 379 182 5 1353 299 299 126 0 chr9 100773561 100773688 -23302484 - MTEa LTR MaLR -236 143 1 5 1353 1103 82 7 0 chr9 100773802 100773949 -23302223 + B1_Mus1 SINE Alu 1 148 0 5 1353 201 132 0 0 chr9 100773949 100773987 -23302185 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1353 751 258 43 32 chr9 100774061 100774249 -23301923 + B3 SINE B2 4 193 -23 5 1353 1100 61 0 13 chr9 100775232 100775382 -23300790 + B1_Mus1 SINE Alu 1 148 0 5 1353 189 107 0 0 chr9 100775382 100775410 -23300762 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1353 699 203 30 0 chr9 100775712 100775845 -23300327 + B1_Mur2 SINE Alu 4 140 -9 5 1353 234 0 0 0 chr9 100776374 100776400 -23299772 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1353 261 324 44 0 chr9 100780040 100780108 -23296064 + ID4 SINE ID 2 72 -11 5 1353 236 237 17 17 chr9 100781004 100781064 -23295108 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 5 1353 3767 197 26 24 chr9 100781589 100782426 -23293746 - Lx2B LINE L1 -7 6993 6078 5 1353 9553 79 14 26 chr9 100783054 100785487 -23290685 - Lx3_Mus LINE L1 -8 7001 4596 5 1353 519 71 0 0 chr9 100785514 100785584 -23290588 - Lx3_Mus LINE L1 -1514 4372 4303 5 1353 5586 78 24 118 chr9 100785578 100786602 -23289570 + Lx3_Mus LINE L1 3382 4309 -1577 5 1353 432 304 9 0 chr9 100786686 100786798 -23289374 + B1_Mur1 SINE Alu 13 125 -24 5 1353 236 295 67 87 chr9 100786797 100786901 -23289271 + RSINE1 SINE B4 60 161 -4 5 1353 329 0 0 24 chr9 100786963 100787005 -23289167 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 1353 1062 38 0 0 chr9 100787005 100787137 -23289035 - B1_Mus2 SINE Alu -10 137 6 5 1353 435 209 0 113 chr9 100787030 100787154 -23289018 - MT2B LTR ERVL -337 264 155 5 1353 207 385 55 9 chr9 100787182 100787292 -23288880 - L2a LINE L2 -37 3389 3275 5 1353 328 173 0 0 chr9 100787347 100787399 -23288773 + B1_Mur3 SINE Alu 93 144 -5 5 1353 591 145 122 87 chr9 100789385 100789584 -23286588 - Lx2 LINE L1 0 6997 6809 5 1353 310 305 59 12 chr9 100793808 100793977 -23282195 - L1MC4a LINE L1 -455 7587 7411 5 169 360 320 131 32 chr9 100794097 100794542 -23281630 - L1MC4a LINE L1 -488 7394 6906 5 1354 428 256 132 0 chr9 100794779 100794908 -23281264 + RSINE1 SINE B4 20 165 0 5 1354 3752 55 14 10 chr9 100795067 100795562 -23280610 + L1Md_F2 LINE L1 6084 6580 -2 5 1354 511 165 99 0 chr9 100795719 100795810 -23280362 + B1_Mur4 SINE Alu 37 136 -14 5 1354 380 181 12 0 chr9 100795812 100795895 -23280277 + GA-rich Low_complexity Low_complexity 1 84 0 5 1354 321 47 0 0 chr9 100795906 100795949 -23280223 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 5 1354 239 343 122 27 chr9 100795957 100796104 -23280068 - MIR SINE MIR -24 238 78 5 1354 322 292 80 62 chr9 100796671 100796784 -23279388 - PB1D9 SINE Alu 0 120 6 5 1354 229 344 35 71 chr9 100796885 100796936 -23279236 + B4A SINE B4 43 88 -204 5 1354 513 271 34 8 chr9 100796936 100797055 -23279117 + PB1 SINE Alu 4 125 -2 5 1354 279 325 32 95 chr9 100797178 100797304 -23278868 + PB1 SINE Alu 7 124 -3 5 1354 743 273 88 0 chr9 100797575 100797769 -23278403 + B3 SINE B2 1 211 -5 5 1354 599 118 282 0 chr9 100797846 100797956 -23278216 + B1_Mus1 SINE Alu 1 141 -7 5 1354 249 33 0 0 chr9 100797958 100797988 -23278184 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1354 284 248 149 56 chr9 100798335 100798442 -23277730 + PB1D10 SINE Alu 1 117 0 5 1354 809 161 70 0 chr9 100798549 100798692 -23277480 + B2_Mm2 SINE B2 2 154 -41 5 1354 459 276 94 54 chr9 100798697 100798900 -23277272 + B3 SINE B2 3 213 -3 5 1354 324 0 0 0 chr9 100799484 100799520 -23276652 + (CTTG)n Simple_repeat Simple_repeat 4 39 0 5 1354 189 0 0 0 chr9 100799521 100799542 -23276630 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1354 972 142 34 17 chr9 100799629 100799808 -23276364 - B2_Mm2 SINE B2 -12 183 2 5 1354 1151 62 7 0 chr9 100800610 100800756 -23275416 - B1_Mus1 SINE Alu 0 148 2 5 1354 818 139 72 72 chr9 100800935 100801129 -23275043 - B2_Mm2 SINE B2 0 195 2 5 1354 1121 128 41 0 chr9 100801171 100801366 -23274806 - L1_Mur2 LINE L1 -1423 4454 4252 5 1354 432 132 0 13 chr9 100801365 100801442 -23274730 + L1_Mur2 LINE L1 4202 4277 -1600 5 1354 888 306 70 17 chr9 100801541 100802242 -23273930 - L1MD1 LINE L1 -76 6103 5362 5 1354 248 312 13 25 chr9 100802656 100802735 -23273437 + ID_B1 SINE B4 76 153 -71 5 1354 458 253 49 93 chr9 100802666 100802849 -23273323 + MT2B LTR ERVL 90 264 -337 5 1354 694 146 18 0 chr9 100802740 100802850 -23273322 + B1_Mur4 SINE Alu 5 116 -34 5 1354 216 0 0 0 chr9 100802850 100802874 -23273298 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1354 4614 120 187 41 chr9 100803454 100803614 -23272558 + L1_Mus1 LINE L1 4883 5009 -1137 5 1354 3496 64 4 15 chr9 100803614 100804076 -23272096 - L1_Mus1 LINE L1 -2 6565 6109 5 1354 7638 70 68 15 chr9 100804076 100805480 -23270692 + L1_Mus1 LINE L1 5009 6567 0 5 1354 1106 150 101 10 chr9 100805791 100805999 -23270173 + Lx4A LINE L1 6832 7058 0 5 1354 33 43 0 0 chr9 100806002 100806049 -23270123 + AT_rich Low_complexity Low_complexity 1 47 0 6 1354 21 0 0 0 chr9 100806337 100806358 -23269814 + AT_rich Low_complexity Low_complexity 1 21 0 6 1354 288 137 0 0 chr9 100806410 100806461 -23269711 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1354 3512 218 92 12 chr9 100806479 100807368 -23268804 - Lx2 LINE L1 -136 6861 5963 6 1354 441 103 0 0 chr9 100807578 100807646 -23268526 + (TTG)n Simple_repeat Simple_repeat 1 68 0 6 1354 1206 34 0 0 chr9 100807814 100807960 -23268212 + B1_Mus1 SINE Alu 3 148 0 6 1354 186 133 0 0 chr9 100808194 100808224 -23267948 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 6 1354 237 253 41 62 chr9 100808281 100808378 -23267794 - B1F SINE Alu -49 100 6 6 1354 236 200 18 35 chr9 100808383 100808440 -23267732 + Charlie1b DNA MER1_type 464 519 -4 6 1354 324 318 153 5 chr9 100808440 100808636 -23267536 + L1ME3B LINE L1 5645 5869 -371 6 1354 732 174 83 0 chr9 100809981 100810113 -23266059 - B1_Mur4 SINE Alu -7 143 1 6 1354 728 208 167 18 chr9 100810302 100810615 -23265557 - RMER6B LTR ERVK -17 444 16 6 1354 23 33 0 0 chr9 100810714 100810744 -23265428 + AT_rich Low_complexity Low_complexity 1 30 0 6 1354 455 237 243 0 chr9 100810863 100811036 -23265136 + B3 SINE B2 1 215 -1 6 1354 269 204 43 0 chr9 100811259 100811352 -23264820 + T-rich Low_complexity Low_complexity 4 100 0 6 1354 628 212 8 8 chr9 100811354 100811473 -23264699 - PB1D9 SINE Alu -1 119 1 6 1354 380 326 151 52 chr9 100811887 100812159 -23264013 - RMER13A LTR ERVK -559 301 3 6 1354 948 66 80 7 chr9 100812234 100812371 -23263801 - B1_Mus1 SINE Alu 0 148 2 6 1354 235 231 47 93 chr9 100812446 100812532 -23263640 - MurSatRep1 Unknown Unknown -1834 303 222 6 1354 452 18 0 17 chr9 100812555 100812613 -23263559 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1354 692 218 134 65 chr9 100812633 100812834 -23263338 + B3 SINE B2 2 216 0 6 1354 495 239 95 130 chr9 100812843 100813074 -23263098 + ID_B1 SINE B4 2 224 0 6 1354 3353 290 131 33 chr9 100813229 100813357 -23262815 - Lx8 LINE L1 -4 7469 7354 6 1354 270 0 0 0 chr9 100813357 100813387 -23262785 + (CTG)n Simple_repeat Simple_repeat 2 31 0 6 1354 3353 288 111 36 chr9 100813387 100815368 -23260804 - Lx8 LINE L1 -120 7353 5137 6 1354 569 267 194 63 chr9 100815374 100815658 -23260514 - ORR1D2 LTR MaLR -8 362 42 6 1354 770 215 126 0 chr9 100816998 100817189 -23258983 - B3 SINE B2 -1 215 1 6 1354 222 91 0 0 chr9 100817954 100817987 -23258185 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 6 1354 1120 41 0 45 chr9 100818014 100818168 -23258004 - B1_Mus2 SINE Alu 0 147 1 6 1354 461 302 36 23 chr9 100818195 100818336 -23257836 - B1_Mur4 SINE Alu -1 149 1 6 1354 288 217 93 35 chr9 100819136 100819222 -23256950 + PB1D10 SINE Alu 27 117 0 6 1354 857 306 129 34 chr9 100819704 100819968 -23256204 + B4A SINE B4 2 290 -2 6 1354 792 104 17 0 chr9 100820264 100820379 -23255793 + PB1D9 SINE Alu 4 120 0 6 1354 576 29 0 0 chr9 100820389 100820459 -23255713 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1354 10476 13 0 3 chr9 100820829 100822743 -23253429 - L1Md_T LINE L1 0 6582 4675 6 1354 21 36 0 0 chr9 100822953 100822981 -23253191 + AT_rich Low_complexity Low_complexity 1 28 0 6 1354 383 288 88 54 chr9 100822995 100823142 -23253030 - RSINE1 SINE B4 -12 153 2 6 1354 1211 306 77 65 chr9 100823311 100823944 -23252228 - MER21-int LTR ERV1 -3522 669 29 6 1354 1538 201 37 83 chr9 100824233 100824608 -23251564 - ORR1D1 LTR MaLR -12 362 5 6 1354 505 263 83 0 chr9 100824734 100824867 -23251305 - MER21B LTR ERV1 -513 350 207 6 1354 392 313 106 47 chr9 100824889 100825211 -23250961 + Lx9 LINE L1 7192 7532 -112 6 1354 497 251 207 53 chr9 100825207 100825434 -23250738 - Lx9 LINE L1 -458 7186 6925 6 1354 2710 83 8 0 chr9 100825622 100825983 -23250189 - Lx3_Mus LINE L1 -120 6889 6526 6 1354 1860 161 89 18 chr9 100825993 100826386 -23249786 - Lx2B LINE L1 -85 6915 6495 6 1354 2650 176 82 13 chr9 100826376 100826899 -23249273 + Lx2B LINE L1 5975 6533 -467 6 1354 462 161 0 26 chr9 100827036 100827142 -23249030 - ORR1D1 LTR MaLR -139 245 151 6 1354 586 252 13 52 chr9 100827364 100827519 -23248653 + B1_Mur2 SINE Alu 1 149 0 6 1354 399 279 92 8 chr9 100827531 100827661 -23248511 + RSINE1 SINE B4 25 165 0 6 1354 565 263 62 11 chr9 100827927 100828104 -23248068 - B3 SINE B2 -30 186 1 6 1354 1107 136 27 11 chr9 100828644 100828670 -23247502 - B2_Mm1t SINE B2 -4 189 161 6 1354 243 0 0 0 chr9 100828670 100828697 -23247475 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 1354 1136 120 0 0 chr9 100828697 100828856 -23247316 - B2_Mm2 SINE B2 -33 160 1 6 1354 360 351 32 168 chr9 100828893 100829208 -23246964 - MER115 DNA Tip100 -114 579 308 6 1354 30 0 0 0 chr9 100829416 100829446 -23246726 + AT_rich Low_complexity Low_complexity 1 30 0 6 1354 954 226 14 14 chr9 100830821 100831032 -23245140 + B3 SINE B2 1 211 -5 6 1354 648 209 48 54 chr9 100831059 100831206 -23244966 - B1_Mur3 SINE Alu -2 147 2 6 1354 371 217 12 24 chr9 100831252 100831337 -23244835 + B3A SINE B2 1 84 -114 6 1354 557 218 0 0 chr9 100831455 100831556 -23244616 - B1_Mur3 SINE Alu -40 109 9 6 1354 243 273 0 70 chr9 100831819 100831890 -23244282 + tRNA-Ala-GCA tRNA tRNA 2 67 -8 6 1354 1248 312 101 35 chr9 100832774 100833688 -23242484 + Lx9 LINE L1 4883 5888 -1756 6 1354 263 207 132 44 chr9 100833902 100833993 -23242179 - PB1D9 SINE Alu 0 120 22 6 1354 251 268 0 18 chr9 100834351 100834408 -23241764 - ID4 SINE ID -26 57 2 6 1354 710 198 0 16 chr9 100834438 100834566 -23241606 - B1_Mus1 SINE Alu -1 147 22 6 1354 308 235 88 102 chr9 100834439 100834586 -23241586 - B4 SINE B4 -69 223 79 6 1354 390 330 0 72 chr9 100834637 100834748 -23241424 - RSINE1 SINE B4 0 165 63 6 1354 385 267 81 37 chr9 100834777 100834913 -23241259 - B1F SINE Alu -5 144 3 6 1354 4380 174 9 21 chr9 100835197 100835971 -23240201 - Lx5 LINE L1 0 7050 6286 6 1354 21810 67 6 53 chr9 100835971 100839083 -23237089 + L1Md_F2 LINE L1 2622 5586 -297 6 1354 7346 54 74 14 chr9 100839083 100840019 -23236153 + L1Md_F2 LINE L1 5587 6578 -4 6 1354 541 145 12 0 chr9 100840020 100840103 -23236069 - L1_Mur2 LINE L1 -307 5570 5487 6 1354 6945 145 68 20 chr9 100840091 100841404 -23234768 - L1_Mur2 LINE L1 -1267 4610 3234 6 1354 550 98 0 0 chr9 100841404 100841486 -23234686 + ORR1A2 LTR MaLR 1 82 -245 6 1354 3918 148 70 8 chr9 100841495 100842259 -23233913 - L1_Mur2 LINE L1 -3906 1971 1126 6 1354 1039 39 0 0 chr9 100842259 100842389 -23233783 - L1Md_T LINE L1 0 6582 6453 6 1354 1791 138 158 17 chr9 100842389 100842627 -23233545 - L1_Mur2 LINE L1 -5961 1125 883 6 1354 783 240 0 20 chr9 100843335 100843484 -23232688 + B1_Mur1 SINE Alu 2 147 -2 6 1354 32 26 0 0 chr9 100843495 100843534 -23232638 + AT_rich Low_complexity Low_complexity 1 39 0 6 1354 627 183 16 94 chr9 100843542 100843669 -23232503 + PB1D9 SINE Alu 3 119 -1 6 1354 379 306 139 0 chr9 100843842 100843950 -23232222 - PB1 SINE Alu 0 127 5 6 1354 366 23 0 0 chr9 100844982 100845025 -23231147 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1354 26 0 0 0 chr9 100845155 100845181 -23230991 + AT_rich Low_complexity Low_complexity 1 26 0 6 1354 1201 109 74 0 chr9 100845701 100845876 -23230296 - B2_Mm1t SINE B2 -5 188 1 6 1354 267 114 0 0 chr9 100847133 100847177 -23228995 + (TCC)n Simple_repeat Simple_repeat 3 46 0 6 1354 1589 49 27 0 chr9 100847907 100848091 -23228081 + B2_Mm1a SINE B2 1 189 -4 6 1354 646 83 0 0 chr9 100848180 100848264 -23227908 + B1_Mus2 SINE Alu 59 142 -5 6 1354 388 281 135 0 chr9 100848325 100848421 -23227751 + ID_B1 SINE B4 93 201 -23 6 1354 1455 86 21 0 chr9 100848593 100848779 -23227393 - B2_Mm2 SINE B2 -5 190 1 6 1354 287 332 18 110 chr9 100849136 100849363 -23226809 + MIRb SINE MIR 60 265 -3 6 1354 351 98 0 0 chr9 100849501 100849562 -23226610 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1354 725 230 202 0 chr9 100849819 100849997 -23226175 - B3 SINE B2 -2 214 1 6 1354 275 45 0 43 chr9 100850930 100850976 -23225196 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1354 684 58 0 0 chr9 100850979 100851066 -23225106 - B1_Mus2 SINE Alu 0 147 61 6 1354 502 245 9 36 chr9 100851657 100851767 -23224405 + PB1D10 SINE Alu 5 111 -6 6 1354 409 286 54 0 chr9 100851791 100851903 -23224269 + ID_B1 SINE B4 105 222 -2 6 1354 554 242 75 8 chr9 100852849 100852982 -23223190 + ID_B1 SINE B4 81 222 -2 6 1354 1312 34 0 0 chr9 100854281 100854428 -23221744 + B1_Mm SINE Alu 1 147 0 6 1354 374 306 9 44 chr9 100855211 100855324 -23220848 + PB1D10 SINE Alu 1 109 -8 6 1354 216 329 81 14 chr9 100855332 100855406 -23220766 + ID4_ SINE ID 4 82 -1 6 1354 442 111 0 14 chr9 100855436 100855509 -23220663 - L1_Mus1 LINE L1 0 6567 6496 6 1354 301 278 156 0 chr9 100855762 100855852 -23220320 + RSINE1 SINE B4 5 108 -57 6 1354 324 268 47 39 chr9 100855891 100856019 -23220153 - MLT1B LTR MaLR -252 138 10 6 1354 475 327 6 12 chr9 100856244 100856408 -23219764 + B3A SINE B2 1 163 -35 6 1354 583 265 13 33 chr9 100856425 100856577 -23219595 + B1_Mur1 SINE Alu 1 149 0 6 1354 276 291 68 0 chr9 100859907 100860024 -23216148 + L1_Mur2 LINE L1 1681 1805 -4072 6 1354 1144 144 72 6 chr9 100860102 100860283 -23215889 + B2_Mm2 SINE B2 1 193 -2 6 1354 692 283 18 6 chr9 100860472 100860639 -23215533 + B3A SINE B2 1 169 -29 6 1354 1019 220 70 3 chr9 100860805 100861121 -23215051 + MTD LTR MaLR 32 419 0 6 1354 314 286 228 26 chr9 100861170 100861561 -23214611 + L1M2 LINE L1 2230 2699 -3444 6 1354 23 33 0 0 chr9 100861591 100861621 -23214551 + AT_rich Low_complexity Low_complexity 1 30 0 7 1354 1156 82 0 14 chr9 100861706 100861854 -23214318 - B1_Mus1 SINE Alu -1 147 2 7 1354 438 333 90 0 chr9 100861970 100862114 -23214058 - RSINE1 SINE B4 -1 164 8 7 1354 252 258 0 0 chr9 100862115 100862177 -23213995 + L1M2 LINE L1 2978 3039 -3104 6 1354 3605 53 13 34 chr9 100862467 100862933 -23213239 + L1_Mus1 LINE L1 6112 6567 0 7 1354 446 260 95 75 chr9 100862941 100863151 -23213021 + L1_Rod LINE L1 3119 3351 -2496 7 1354 855 171 14 54 chr9 100863151 100863299 -23212873 + B1_Mus1 SINE Alu 2 143 -5 7 1354 446 260 95 75 chr9 100863299 100863383 -23212789 + L1_Rod LINE L1 3352 3419 -2428 7 1354 377 318 0 11 chr9 100863394 100863483 -23212689 + RSINE1 SINE B4 3 90 -75 7 1354 1904 149 119 29 chr9 100863504 100863883 -23212289 - MTC LTR MaLR -8 413 1 7 1354 22 35 0 0 chr9 100864559 100864588 -23211584 + AT_rich Low_complexity Low_complexity 1 29 0 7 1354 3482 108 134 38 chr9 100865411 100865940 -23210232 - Lx2 LINE L1 0 6997 6402 7 1354 279 0 0 0 chr9 100865940 100865971 -23210201 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 7 1354 1303 28 0 0 chr9 100865973 100866114 -23210058 - B1_Mus2 SINE Alu -6 141 1 7 1354 3482 108 134 38 chr9 100866114 100866195 -23209977 - Lx2 LINE L1 -596 6401 6325 7 1354 5653 70 10 82 chr9 100866199 100867111 -23209061 + MusHAL1 LINE L1 1297 2142 -570 7 1354 4039 132 87 15 chr9 100867114 100867784 -23208388 - RMER19A LTR ERVK -19 718 1 7 1354 1979 206 73 33 chr9 100868463 100868945 -23207227 - RLTR42-int LTR ERVK -2656 2866 2366 7 1354 659 104 0 9 chr9 100868967 100869074 -23207098 + (TA)n Simple_repeat Simple_repeat 1 106 0 7 1354 396 0 0 0 chr9 100869098 100869142 -23207030 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 7 1354 627 238 20 55 chr9 100869214 100869414 -23206758 - RLTR42-int LTR ERVK -3207 2315 2123 7 1354 779 110 0 0 chr9 100869502 100869611 -23206561 + B1_Mus1 SINE Alu 37 145 -3 7 1354 225 0 0 0 chr9 100869611 100869636 -23206536 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 7 1354 22 35 0 0 chr9 100869675 100869704 -23206468 + AT_rich Low_complexity Low_complexity 1 29 0 7 1354 1953 187 73 5 chr9 100869779 100870192 -23205980 - BGLII_B LTR ERVK 0 441 1 7 1354 366 256 12 0 chr9 100870273 100870300 -23205872 + B4A SINE B4 58 85 -207 7 1354 418 108 25 63 chr9 100870300 100870379 -23205793 + PB1D9 SINE Alu 1 76 -44 7 1354 381 43 0 0 chr9 100870772 100870819 -23205353 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1354 318 67 0 0 chr9 100870821 100870866 -23205306 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1354 963 128 0 8 chr9 100871274 100871408 -23204764 + B1_Mur3 SINE Alu 5 137 -12 7 1354 3522 28 2 17 chr9 100871408 100871810 -23204362 - MTB LTR MaLR -4 396 1 7 1354 258 32 0 0 chr9 100871822 100871853 -23204319 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 7 1354 287 200 0 0 chr9 100871859 100871909 -23204263 - RLTR42-int LTR ERVK -4423 1099 1050 7 1354 225 0 0 0 chr9 100871952 100871977 -23204195 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 7 1354 791 204 15 8 chr9 100871977 100872110 -23204062 - B1_Mur2 SINE Alu -12 137 4 7 1354 320 219 51 20 chr9 100872322 100872420 -23203752 - L1_Rod LINE L1 -1932 3915 3815 7 1354 242 217 0 14 chr9 100872455 100872525 -23203647 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1354 1217 51 0 0 chr9 100872603 100872741 -23203431 + B1_Mus1 SINE Alu 1 138 -10 7 1354 226 0 0 56 chr9 100872741 100872777 -23203395 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1354 1023 253 185 29 chr9 100872832 100873549 -23202623 + L1M2 LINE L1 3618 4471 -1672 7 1354 1022 252 67 63 chr9 100873570 100874050 -23202122 + RMER15 LTR ERVL 1 570 -5 7 1354 295 282 50 25 chr9 100874050 100874170 -23202002 + L1_Mm LINE L1 4482 4604 -1279 7 1354 426 207 121 161 chr9 100874944 100875044 -23201128 + RMER21B LTR ERV1 323 412 -430 7 1354 1285 48 0 0 chr9 100875044 100875191 -23200981 + B1_Mus2 SINE Alu 1 147 0 7 1354 426 207 121 161 chr9 100875191 100875209 -23200963 + RMER21B LTR ERV1 413 415 -427 7 1354 231 61 0 0 chr9 100875209 100875242 -23200930 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 7 1354 426 207 121 161 chr9 100875242 100875370 -23200802 + RMER21B LTR ERV1 416 560 -282 7 1354 251 179 0 0 chr9 100875797 100875836 -23200336 - RLTR42-int LTR ERVK -3787 1735 1697 7 1354 3137 49 67 3 chr9 100875908 100876294 -23199878 + RLTR10A LTR ERVK 1 411 0 7 1354 1216 62 0 14 chr9 100877027 100877175 -23198997 - B1_Mus1 SINE Alu -2 146 1 7 1354 301 321 60 30 chr9 100877832 100877999 -23198173 + L1M4 LINE L1 5633 5804 -370 7 1354 507 298 8 0 chr9 100878072 100878193 -23197979 + RSINE1 SINE B4 2 123 -42 7 1354 279 0 0 0 chr9 100878208 100878239 -23197933 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1354 257 238 185 31 chr9 100878318 100878448 -23197724 + RLTR25A LTR ERVK 433 582 -521 7 1354 1136 22 0 14 chr9 100878353 100878493 -23197679 + B1_Mus2 SINE Alu 9 146 -1 7 1354 591 15 0 0 chr9 100879190 100879258 -23196914 + (CACAC)n Simple_repeat Simple_repeat 1 68 0 7 1354 1181 284 174 15 chr9 100879453 100879971 -23196201 - MTE-int LTR MaLR -34 1546 947 7 1354 307 182 18 0 chr9 100880001 100880056 -23196116 - B3A SINE B2 -142 56 1 7 1354 363 276 0 0 chr9 100880087 100880163 -23196009 + RSINE1 SINE B4 2 77 -88 7 1354 225 258 61 0 chr9 100880348 100880414 -23195758 - ORR1E LTR MaLR -223 136 67 7 1354 656 234 14 21 chr9 100880656 100880796 -23195376 + RSINE1 SINE B4 26 164 -1 7 1354 1236 81 0 0 chr9 100880835 100880983 -23195189 + B1_Mus1 SINE Alu 1 148 0 7 1354 3617 33 2 0 chr9 100881147 100881542 -23194630 - MTA_Mm LTR MaLR 0 396 1 7 1354 5505 72 4 1 chr9 100881649 100882330 -23193842 + L1_Mus3 LINE L1 5950 6632 -6 7 1354 319 296 124 58 chr9 100882459 100882685 -23193487 - MLT1A1 LTR MaLR -4 404 164 7 1354 733 253 6 34 chr9 100883523 100883699 -23192473 + B3A SINE B2 2 172 -26 7 1354 186 43 0 0 chr9 100883723 100883746 -23192426 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 7 1354 883 41 202 16 chr9 100883748 100883872 -23192300 - B1_Mm SINE Alu 0 147 1 7 1354 281 327 94 57 chr9 100883983 100884142 -23192030 + MLT1H LTR MaLR 129 293 -256 7 1354 1345 97 11 0 chr9 100884375 100884550 -23191622 + B2_Mm1t SINE B2 2 178 -15 7 1354 289 59 59 0 chr9 100884646 100884697 -23191475 + B2_Mm2 SINE B2 137 190 -5 7 1354 275 0 29 0 chr9 100884967 100885002 -23191170 + (CACG)n Simple_repeat Simple_repeat 1 36 0 7 1354 820 215 62 62 chr9 100886510 100886753 -23189419 + B4A SINE B4 2 244 -48 7 1354 767 137 55 115 chr9 100886755 100886920 -23189252 + ORR1A2 LTR MaLR 3 157 -170 7 1354 409 204 78 69 chr9 100886932 100887048 -23189124 + PB1D9 SINE Alu 3 119 -1 7 1354 442 257 9 18 chr9 100887235 100887346 -23188826 - PB1D10 SINE Alu -3 114 5 7 1354 197 33 33 0 chr9 100887375 100887405 -23188767 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1354 905 140 7 22 chr9 100887406 100887545 -23188627 - B1_Mur3 SINE Alu -11 138 2 7 1354 1213 88 0 0 chr9 100887826 100887973 -23188199 - B1_Mus2 SINE Alu 0 147 1 7 1354 834 90 0 0 chr9 100888415 100888549 -23187623 + (CAGCC)n Simple_repeat Simple_repeat 2 135 0 7 1354 1234 35 7 0 chr9 100888685 100888830 -23187342 + B1_Mus2 SINE Alu 2 147 0 7 1354 318 106 0 0 chr9 100888834 100888881 -23187291 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 7 1354 270 0 0 0 chr9 100888883 100888913 -23187259 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 7 1354 726 194 37 0 chr9 100888951 100889085 -23187087 + B3A SINE B2 2 140 -58 7 1354 369 0 0 0 chr9 100889095 100889136 -23187036 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1354 657 236 21 0 chr9 100889660 100889800 -23186372 + B1_Mur2 SINE Alu 2 144 -5 7 1354 359 292 156 12 chr9 100889827 100890083 -23186089 - L1MC4 LINE L1 -824 7218 6926 7 1354 636 216 16 0 chr9 100890190 100890315 -23185857 + B1_Mus1 SINE Alu 3 129 -19 7 1354 1187 112 33 22 chr9 100890316 100890499 -23185673 - B2_Mm1t SINE B2 -8 185 1 7 1354 426 85 0 0 chr9 100890958 100891017 -23185155 + (CATA)n Simple_repeat Simple_repeat 2 60 0 7 1354 1327 115 5 0 chr9 100891383 100891574 -23184598 + B2_Mm1a SINE B2 2 193 0 7 1354 322 283 70 9 chr9 100891954 100892068 -23184104 - L1MC4 LINE L1 -2335 5547 5427 7 1354 367 301 97 61 chr9 100892110 100892315 -23183857 - B4A SINE B4 -68 224 6 7 1354 379 340 140 24 chr9 100892315 100892698 -23183474 - L1MC4 LINE L1 -2464 5418 4973 7 1354 278 238 135 29 chr9 100892698 100892802 -23183370 - PB1D10 SINE Alu -2 115 1 7 1354 379 346 165 37 chr9 100892802 100892981 -23183191 - L1MC4 LINE L1 -1174 4972 4790 7 1354 573 216 21 135 chr9 100893578 100893771 -23182401 - B3 SINE B2 0 216 46 7 1354 1589 125 7 15 chr9 100893772 100894041 -23182131 + RMER6C LTR ERVK 424 690 0 7 1354 681 188 38 69 chr9 100894041 100894058 -23182114 - RSINE1 SINE B4 -7 158 143 7 1354 318 50 0 0 chr9 100894058 100894098 -23182074 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1354 681 188 38 69 chr9 100894098 100894240 -23181932 - RSINE1 SINE B4 -23 142 4 7 1354 315 0 0 0 chr9 100895225 100895260 -23180912 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1354 180 326 84 0 chr9 100896815 100896910 -23179262 + L2a LINE L2 3318 3420 -6 7 1354 335 240 170 46 chr9 100896959 100897112 -23179060 + L1MB7 LINE L1 5548 5719 -465 7 1354 340 305 21 84 chr9 100897171 100897314 -23178858 + ID_B1 SINE B4 2 135 -89 7 1354 1152 75 0 14 chr9 100897314 100897462 -23178710 + B1_Mus1 SINE Alu 2 147 -1 7 1354 249 214 0 0 chr9 100897463 100897519 -23178653 + A-rich Low_complexity Low_complexity 1 56 0 7 1354 269 281 95 15 chr9 100897715 100897852 -23178320 + B1F2 SINE Alu 1 148 -1 7 1354 1166 68 0 0 chr9 100897889 100898036 -23178136 + B1_Mus1 SINE Alu 2 148 0 7 1354 481 301 16 0 chr9 100898211 100898334 -23177838 + RSINE1 SINE B4 3 127 -38 7 1354 245 222 0 3 chr9 100898566 100898628 -23177544 + L1MB7 LINE L1 5894 5954 -224 7 1354 2089 95 39 7 chr9 100898630 100898937 -23177235 + ORR1A2 LTR MaLR 3 319 -8 7 1354 181 170 51 102 chr9 100899192 100899251 -23176921 - L2 LINE L2 -2867 552 497 8 1354 1553 48 21 0 chr9 100899338 100899525 -23176647 + B2_Mm1a SINE B2 2 192 -1 8 1354 2124 158 47 0 chr9 100899851 100900211 -23175961 + ORR1C1 LTR MaLR 2 378 0 8 1354 315 0 0 0 chr9 100900525 100900560 -23175612 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 8 1354 438 267 8 41 chr9 100900570 100900691 -23175481 - ID_B1 SINE B4 -34 190 74 8 1354 279 0 0 0 chr9 100901106 100901137 -23175035 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1354 216 64 64 0 chr9 100901242 100901289 -23174883 + (TTG)n Simple_repeat Simple_repeat 2 51 0 8 1354 767 145 29 44 chr9 100901340 100901477 -23174695 + B1_Mur2 SINE Alu 1 135 -14 8 1354 189 0 0 0 chr9 100901477 100901498 -23174674 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 8 1354 882 138 7 27 chr9 100901586 100901735 -23174437 - B1_Mur4 SINE Alu 0 150 5 8 1354 1193 55 14 0 chr9 100902274 100902420 -23173752 + B1_Mus1 SINE Alu 1 148 0 8 1354 573 204 28 0 chr9 100902651 100902759 -23173413 + B3 SINE B2 106 216 0 8 1354 1241 41 0 0 chr9 100903160 100903306 -23172866 - B1_Mm SINE Alu 0 147 2 8 1354 2479 157 124 2 chr9 100903308 100903775 -23172397 + RLTR11A LTR ERVK 5 528 0 8 1354 858 209 44 39 chr9 100903777 100903981 -23172191 + B3 SINE B2 7 211 -5 8 1354 951 144 23 35 chr9 100904290 100904462 -23171710 - B2_Mm2 SINE B2 -23 172 3 8 1354 2309 105 12 0 chr9 100904463 100904786 -23171386 + ORR1A2 LTR MaLR 1 327 0 8 1354 1729 100 107 53 chr9 100905336 100905674 -23170498 - RLTR10B2 LTR ERVK -9 356 1 8 1354 21 71 0 0 chr9 100907784 100907826 -23168346 + AT_rich Low_complexity Low_complexity 1 42 0 8 1354 581 174 36 9 chr9 100907827 100907937 -23168235 + B3 SINE B2 104 216 0 8 1354 1011 238 60 84 chr9 100908155 100908572 -23167600 + L1MC1 LINE L1 5542 5948 -385 8 1354 1077 212 20 5 chr9 100908587 100908791 -23167381 + B3 SINE B2 9 215 -1 8 1354 1068 57 174 12 chr9 100908804 100908965 -23167207 + B2_Mm1t SINE B2 2 188 -5 8 1354 1151 45 0 0 chr9 100909014 100909148 -23167024 - B1_Mus2 SINE Alu -11 136 3 8 1354 500 209 93 36 chr9 100909200 100909339 -23166833 - RSINE1 SINE B4 -15 150 4 8 1354 272 273 0 15 chr9 100909807 100909874 -23166298 + ID4_ SINE ID 8 73 -10 8 1354 516 72 0 45 chr9 100909874 100909962 -23166210 + L1Md_F2 LINE L1 6440 6523 -59 8 1354 1987 123 52 61 chr9 100909991 100910320 -23165852 - ORR1A3 LTR MaLR 0 326 1 8 1354 200 73 91 0 chr9 100910791 100910846 -23165326 + T-rich Low_complexity Low_complexity 5 64 0 8 1354 377 338 7 36 chr9 100910853 100910991 -23165181 - B1F1 SINE Alu -7 142 9 8 1354 384 318 22 57 chr9 100911016 100911186 -23164986 + L1M3 LINE L1 4547 4717 -1423 8 1354 393 22 0 0 chr9 100911186 100911232 -23164940 + (TTA)n Simple_repeat Simple_repeat 1 46 0 8 1354 716 209 37 0 chr9 100911234 100911368 -23164804 - B1_Mus2 SINE Alu -7 140 2 8 1354 384 318 22 57 chr9 100911368 100911421 -23164751 + L1M3 LINE L1 4718 4765 -1375 8 1354 770 248 9 17 chr9 100912005 100912178 -23163994 - B3A SINE B2 -33 165 1 8 1354 211 0 88 0 chr9 100912279 100912313 -23163859 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 8 1354 998 82 13 64 chr9 100912405 100912542 -23163630 + B1_Mur2 SINE Alu 1 136 -13 8 1354 225 0 0 0 chr9 100912542 100912567 -23163605 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1354 998 82 13 64 chr9 100912567 100912586 -23163586 + B1_Mur2 SINE Alu 137 149 0 8 1354 214 170 21 0 chr9 100912629 100912676 -23163496 + B1_Mus2 SINE Alu 98 145 -2 8 1354 435 263 187 38 chr9 100913984 100914255 -23161917 + B4 SINE B4 1 292 0 8 1354 454 326 94 0 chr9 100914296 100914477 -23161695 + B3A SINE B2 1 198 0 8 1354 188 200 0 18 chr9 100914539 100914595 -23161577 + (CATA)n Simple_repeat Simple_repeat 2 56 0 8 1354 985 126 28 14 chr9 100914612 100914757 -23161415 + B1_Mur4 SINE Alu 3 149 -1 8 1354 357 24 0 0 chr9 100914765 100914807 -23161365 + (CATA)n Simple_repeat Simple_repeat 3 44 0 8 1354 364 233 144 0 chr9 100914949 100915039 -23161133 + PB1D10 SINE Alu 1 103 -14 8 1354 1604 37 0 21 chr9 100915150 100915344 -23160828 + B2_Mm1t SINE B2 2 191 -2 8 1354 21 0 0 0 chr9 100915344 100915365 -23160807 + AT_rich Low_complexity Low_complexity 1 21 0 8 1354 324 317 9 9 chr9 100915365 100915470 -23160702 + PB1D10 SINE Alu 1 105 -12 8 1354 969 76 0 0 chr9 100915482 100915613 -23160559 + (GAA)n Simple_repeat Simple_repeat 2 132 0 8 1354 291 28 0 0 chr9 100915707 100915743 -23160429 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 1354 213 150 0 70 chr9 100915746 100915789 -23160383 - B1F1 SINE Alu -46 103 64 8 1354 308 154 19 0 chr9 100915758 100915810 -23160362 - PB1 SINE Alu -25 102 50 8 1354 204 40 0 0 chr9 100915827 100915852 -23160320 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 8 1354 743 208 0 27 chr9 100916342 100916490 -23159682 - B1_Mm SINE Alu -2 145 2 8 1354 486 247 274 74 chr9 100916529 100916839 -23159333 + MTEa LTR MaLR 1 372 -7 8 1354 522 225 116 0 chr9 100916980 100917109 -23159063 + ID_B1 SINE B4 81 224 0 8 1354 357 62 0 0 chr9 100917330 100917378 -23158794 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1354 996 273 102 84 chr9 100917650 100918522 -23157650 + L1M4c LINE L1 905 1792 -4592 8 1354 1051 242 5 18 chr9 100918769 100918988 -23157184 + B3 SINE B2 1 216 0 8 1354 1229 47 0 7 chr9 100919019 100919168 -23157004 - B1_Mus1 SINE Alu 0 148 1 8 1354 322 277 0 43 chr9 100919247 100919432 -23156740 + G-rich Low_complexity Low_complexity 2 178 0 8 1354 491 327 30 42 chr9 100919591 100919757 -23156415 + RSINE1 SINE B4 2 165 0 8 1354 606 235 37 93 chr9 100919789 100920005 -23156167 + B3A SINE B2 8 211 -5 8 1354 452 310 137 58 chr9 100920053 100920255 -23155917 + L1M4c LINE L1 2419 2619 -3763 8 1354 661 167 151 0 chr9 100920255 100920381 -23155791 + B1_Mus2 SINE Alu 2 146 -1 8 1354 452 310 137 58 chr9 100920381 100920452 -23155720 + L1M4c LINE L1 2620 2697 -3685 8 1354 350 234 163 8 chr9 100920452 100920581 -23155591 + RSINE1 SINE B4 3 151 -14 8 1354 452 310 137 58 chr9 100920581 100920738 -23155434 + L1M4c LINE L1 2698 2882 -3500 8 1354 412 219 37 0 chr9 100920900 100920982 -23155190 + PB1D10 SINE Alu 1 85 -32 8 1354 296 292 27 91 chr9 100921104 100921264 -23154908 + MT2B LTR ERVL 105 260 -324 8 1354 549 252 29 22 chr9 100921163 100921301 -23154871 + B1_Mur1 SINE Alu 6 144 -5 8 1354 1197 43 0 0 chr9 100921320 100921460 -23154712 + B1_Mus2 SINE Alu 2 141 -6 8 1354 387 0 0 0 chr9 100921462 100921505 -23154667 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 8 1354 245 209 57 43 chr9 100921514 100921584 -23154588 + L1MC4 LINE L1 7569 7639 -403 8 1354 385 218 22 28 chr9 100921623 100921802 -23154370 + GA-rich Low_complexity Low_complexity 1 178 0 8 1354 258 269 112 46 chr9 100921874 100922026 -23154146 + L1MC4 LINE L1 7779 7940 -102 8 1354 1195 86 46 0 chr9 100922056 100922231 -23153941 + B2_Mm2 SINE B2 2 184 -11 8 1354 181 83 27 27 chr9 100923107 100923144 -23153028 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 8 1354 1248 41 0 0 chr9 100923160 100923305 -23152867 + B1_Mus2 SINE Alu 3 147 0 8 1354 186 43 0 0 chr9 100923305 100923328 -23152844 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1354 2353 125 44 6 chr9 100924087 100924450 -23151722 - RLTR14 LTR ERV1 0 382 6 8 1354 295 154 0 19 chr9 100924611 100924664 -23151508 - URR1B DNA MER1_type -1 224 173 8 1354 1032 116 7 0 chr9 100924824 100924971 -23151201 + B1_Mus1 SINE Alu 1 148 0 8 169 894 201 25 71 chr9 100925311 100925509 -23150663 + B3 SINE B2 1 189 -27 8 1355 207 0 0 0 chr9 100925531 100925554 -23150618 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1355 354 301 222 29 chr9 100925688 100925931 -23150241 + Charlie4a DNA MER1_type 41 330 -178 8 1355 365 230 0 0 chr9 100925934 100926008 -23150164 + B1_Mur3 SINE Alu 1 74 -75 8 1355 1777 244 59 85 chr9 100926000 100926542 -23149630 + RLTR20C LTR ERVK 7 534 0 8 1355 233 170 20 41 chr9 100926542 100926590 -23149582 + MT2B LTR ERVL 212 258 -343 8 1355 458 224 0 0 chr9 100926547 100926632 -23149540 + B1_Mur3 SINE Alu 63 147 -2 8 1355 1583 58 0 0 chr9 100926638 100926827 -23149345 + B2_Mm1t SINE B2 1 189 -4 8 1355 1019 279 36 4 chr9 100926904 100927152 -23149020 - B4A SINE B4 -35 257 2 8 1355 681 101 0 0 chr9 100928055 100928154 -23148018 + (GGAA)n Simple_repeat Simple_repeat 4 102 0 8 1355 1157 44 7 0 chr9 100928226 100928362 -23147810 + B1_Mm SINE Alu 1 137 -10 8 1355 278 0 54 0 chr9 100928362 100928399 -23147773 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 8 1355 510 295 216 28 chr9 100929160 100929515 -23146657 - MLT1D LTR MaLR -9 496 75 8 1355 2800 74 36 23 chr9 100929515 100929903 -23146269 + MTB_Mm LTR MaLR 1 393 -14 8 1355 382 52 935 11 chr9 100929916 100930009 -23146163 + B2_Mm2 SINE B2 3 181 -14 8 1355 189 0 0 0 chr9 100930009 100930030 -23146142 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1355 1141 72 33 0 chr9 100930030 100930183 -23145989 + B2_Mm1t SINE B2 35 192 -1 8 1355 1325 105 5 5 chr9 100930234 100930426 -23145746 + B2_Mm2 SINE B2 2 193 -2 8 1355 225 0 0 0 chr9 100930436 100930461 -23145711 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1355 741 173 0 0 chr9 100930723 100930850 -23145322 - B1_Mur3 SINE Alu -20 129 3 8 1355 186 43 0 0 chr9 100930860 100930883 -23145289 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1355 197 59 0 56 chr9 100931303 100931339 -23144833 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 8 1355 375 304 54 0 chr9 100931397 100931489 -23144683 + B1F1 SINE Alu 1 97 -52 8 1355 303 28 0 0 chr9 100931494 100931530 -23144642 + (GA)n Simple_repeat Simple_repeat 2 37 0 9 1355 429 259 113 15 chr9 100931754 100931887 -23144285 + B1F SINE Alu 4 149 0 9 1355 260 235 129 29 chr9 100932931 100933001 -23143171 + ID4_ SINE ID 3 79 -4 9 1355 1115 43 0 0 chr9 100933004 100933142 -23143030 + B1_Mm SINE Alu 10 147 0 9 1355 198 0 0 0 chr9 100933142 100933164 -23143008 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1355 455 277 0 0 chr9 100933215 100933309 -23142863 + ID_B1 SINE B4 123 216 -8 9 1355 1238 40 0 0 chr9 100933489 100933628 -23142544 + B1_Mus1 SINE Alu 1 139 -9 9 1355 207 0 0 0 chr9 100933628 100933651 -23142521 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1355 254 106 21 0 chr9 100933730 100933777 -23142395 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 9 1355 198 0 0 0 chr9 100934643 100934665 -23141507 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1355 189 0 0 0 chr9 100935275 100935296 -23140876 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1355 233 266 116 102 chr9 100935755 100936040 -23140132 + B4A SINE B4 1 289 -3 9 1355 1319 226 101 42 chr9 100936089 100936514 -23139658 - MER31A LTR ERV1 -35 450 1 9 1355 239 72 0 23 chr9 100936608 100936651 -23139521 + (CGGGGG)n Simple_repeat Simple_repeat 5 46 0 9 1355 29 0 0 0 chr9 100936823 100936852 -23139320 + AT_rich Low_complexity Low_complexity 1 29 0 9 1355 509 207 84 25 chr9 100936972 100937091 -23139081 - B1_Mur1 SINE Alu 0 149 24 9 1355 26 30 0 0 chr9 100937255 100937288 -23138884 + AT_rich Low_complexity Low_complexity 1 33 0 9 1355 262 294 177 24 chr9 100937372 100937581 -23138591 + MIRb SINE MIR 26 266 -2 9 1355 870 88 0 0 chr9 100937611 100937736 -23138436 + (TCC)n Simple_repeat Simple_repeat 3 127 0 9 1355 815 135 15 31 chr9 100938831 100938961 -23137211 + B1_Mus1 SINE Alu 1 128 -20 9 1355 1339 89 15 30 chr9 100939640 100939838 -23136334 - B2_Mm2 SINE B2 0 195 1 9 1355 354 45 0 0 chr9 100940078 100940122 -23136050 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1355 412 304 126 38 chr9 100940201 100940440 -23135732 + MLT1C LTR MaLR 208 467 0 9 1355 282 56 0 0 chr9 100940626 100940662 -23135510 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1355 482 239 216 0 chr9 100940668 100940802 -23135370 - B3A SINE B2 -34 164 2 9 1355 1576 170 101 16 chr9 100940832 100941143 -23135029 + RMER19B LTR ERVK 548 886 -16 9 1355 1192 61 0 0 chr9 100941143 100941290 -23134882 + B1_Mm SINE Alu 1 147 0 9 1355 279 0 0 0 chr9 100941748 100941779 -23134393 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 1355 216 0 0 0 chr9 100941779 100941802 -23134370 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1355 342 0 0 0 chr9 100941802 100941839 -23134333 + (GA)n Simple_repeat Simple_repeat 1 38 0 9 1355 211 176 0 0 chr9 100941839 100941867 -23134305 - RSINE1 SINE B4 -51 114 87 9 1355 1260 166 106 35 chr9 100941867 100942242 -23133930 - RMER16 LTR ERVK 0 533 2 9 1355 308 271 47 0 chr9 100942245 100942330 -23133842 - RSINE1 SINE B4 -74 91 3 9 1355 512 268 37 128 chr9 100943354 100943542 -23132630 + ID_B1 SINE B4 43 213 -11 9 1355 222 192 0 0 chr9 100943542 100943594 -23132578 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1355 349 309 80 7 chr9 100943656 100943793 -23132379 - RMER15 LTR ERVL -23 552 406 9 1355 1002 156 86 20 chr9 100944247 100944444 -23131728 + B3 SINE B2 1 210 -6 9 1355 42 36 0 0 chr9 100944451 100944507 -23131665 + AT_rich Low_complexity Low_complexity 1 56 0 9 1355 188 35 35 0 chr9 100944510 100944539 -23131633 + (TA)n Simple_repeat Simple_repeat 1 30 0 9 1355 659 55 0 0 chr9 100944542 100944633 -23131539 - B1_Mm SINE Alu -56 91 1 9 1355 638 325 66 0 chr9 100945383 100945595 -23130577 + B4A SINE B4 1 226 -66 9 1355 301 0 0 0 chr9 100945596 100945673 -23130499 + L1Md_T LINE L1 6541 6582 0 9 1355 622 316 112 36 chr9 100946254 100946665 -23129507 - LTR16B2 LTR ERVL -3 459 18 9 1355 255 250 75 0 chr9 100946668 100946748 -23129424 - ID_B1 SINE B4 -2 222 137 9 1355 192 118 0 0 chr9 100946821 100946832 -23129340 + (TG)n Simple_repeat Simple_repeat 1 11 0 9 1355 204 40 0 0 chr9 100946832 100946857 -23129315 + (TC)n Simple_repeat Simple_repeat 2 26 0 9 1355 192 118 0 0 chr9 100946857 100946879 -23129293 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1355 674 277 53 26 chr9 100946939 100947165 -23129007 - B4A SINE B4 -60 232 1 9 1355 591 254 122 0 chr9 100947204 100947385 -23128787 - B3 SINE B2 -9 207 5 9 1355 615 302 0 0 chr9 100947406 100947555 -23128617 - ID_B1 SINE B4 -1 223 75 9 1355 1250 41 0 0 chr9 100947576 100947723 -23128449 - B1_Mus2 SINE Alu 0 147 1 9 1355 1324 87 16 5 chr9 100947725 100947911 -23128261 - B2_Mm2 SINE B2 -6 189 2 9 1355 420 224 62 50 chr9 100948181 100948341 -23127831 - RSINE1 SINE B4 0 165 4 9 1355 250 178 196 72 chr9 100948539 100948636 -23127536 - ORR1D1 LTR MaLR -261 113 5 9 1355 907 216 120 183 chr9 100948933 100949134 -23127038 + MTD LTR MaLR 5 211 -208 9 1355 1393 84 5 20 chr9 100949134 100949329 -23126843 + B2_Mm1a SINE B2 1 192 -1 9 1355 907 216 120 183 chr9 100949329 100949570 -23126602 + MTD LTR MaLR 212 419 0 9 1355 1047 205 174 10 chr9 100949521 100949826 -23126346 - ORR1C2 LTR MaLR 0 384 30 9 1355 1240 227 122 51 chr9 100949870 100950320 -23125852 - RLTR18B LTR ERVK -30 482 1 9 1355 265 294 18 27 chr9 100950335 100950447 -23125725 - PB1 SINE Alu -14 113 3 9 1355 239 231 0 0 chr9 100950603 100950655 -23125517 + PB1D7 SINE Alu 67 118 -2 9 1355 399 168 168 0 chr9 100950671 100950766 -23125406 - MTD LTR MaLR 0 419 309 9 1355 660 222 14 20 chr9 100950768 100950915 -23125257 + B3 SINE B2 71 216 0 9 1355 386 228 119 0 chr9 100951090 100951191 -23124981 + PB1D9 SINE Alu 1 113 -7 9 1355 614 200 25 16 chr9 100951448 100951570 -23124602 + B1_Mur2 SINE Alu 1 123 -26 9 1355 423 0 0 0 chr9 100951571 100951618 -23124554 + (TC)n Simple_repeat Simple_repeat 1 47 0 9 1355 243 0 0 0 chr9 100951618 100951644 -23124528 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1355 632 307 26 49 chr9 100951826 100952093 -23124079 - MER115 DNA Tip100 -1 692 432 9 1355 333 0 0 0 chr9 100952693 100952730 -23123442 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1355 1068 72 0 28 chr9 100952730 100952872 -23123300 - B1_Mus1 SINE Alu -10 138 1 9 1355 219 36 0 0 chr9 100953022 100953050 -23123122 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1355 387 296 61 0 chr9 100953231 100953363 -23122809 - RSINE1 SINE B4 -22 143 4 9 1355 251 130 0 18 chr9 100954522 100954577 -23121595 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 9 1355 444 271 29 130 chr9 100954647 100954855 -23121317 + B3A SINE B2 8 204 -12 9 1355 742 194 20 34 chr9 100954858 100955007 -23121165 + B1_Mur2 SINE Alu 2 148 -1 9 1355 1338 99 11 6 chr9 100955352 100955535 -23120637 + B2_Mm2 SINE B2 2 185 -10 9 1355 262 229 0 35 chr9 100955684 100955709 -23120463 + A-rich Low_complexity Low_complexity 1 24 0 9 1355 798 191 7 13 chr9 100955709 100955858 -23120314 + B1_Mur1 SINE Alu 1 148 -1 9 1355 262 229 0 35 chr9 100955858 100955918 -23120254 + A-rich Low_complexity Low_complexity 25 83 0 9 1355 603 216 8 0 chr9 100956194 100956319 -23119853 + B1_Mur1 SINE Alu 1 126 -23 9 1355 287 148 0 0 chr9 100956320 100956374 -23119798 + B1_Mur1 SINE Alu 70 123 -26 9 1355 435 171 12 0 chr9 100956375 100956457 -23119715 + B1_Mur1 SINE Alu 67 149 0 9 1355 1284 88 27 21 chr9 100956533 100956720 -23119452 - B2_Mm2 SINE B2 -7 188 1 9 1355 801 202 61 50 chr9 100956998 100957196 -23118976 + B3 SINE B2 12 211 -5 9 1355 302 274 74 0 chr9 100957304 100957399 -23118773 + MIRb SINE MIR 67 168 -100 9 1355 1036 200 217 6 chr9 100957457 100957784 -23118388 + MTD LTR MaLR 11 406 -13 9 1355 26 0 0 0 chr9 100957830 100957856 -23118316 + AT_rich Low_complexity Low_complexity 1 26 0 9 1355 909 170 2 0 chr9 100957856 100958529 -23117643 + (TG)n Simple_repeat Simple_repeat 1 674 0 9 1355 909 150 0 0 chr9 100958551 100958731 -23117441 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1355 942 157 0 11 chr9 100958767 100959410 -23116762 + (TG)n Simple_repeat Simple_repeat 1 636 0 9 1355 309 291 58 0 chr9 100959535 100959621 -23116551 + B1F1 SINE Alu 4 94 -55 9 1355 207 0 0 0 chr9 100959642 100959665 -23116507 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1355 1197 34 0 7 chr9 100959674 100959821 -23116351 - B1_Mm SINE Alu 0 147 2 9 1355 249 200 217 0 chr9 100959905 100959965 -23116207 + B3A SINE B2 3 75 -123 9 1355 606 179 0 9 chr9 100960079 100960186 -23115986 - PB1D9 SINE Alu -5 115 10 9 1355 23 110 0 0 chr9 100960193 100960293 -23115879 + AT_rich Low_complexity Low_complexity 1 100 0 9 1355 480 120 0 0 chr9 100960303 100960378 -23115794 - MTD LTR MaLR -5 414 340 9 1355 280 279 0 0 chr9 100964793 100964861 -23111311 - ID4 SINE ID -13 70 3 9 1355 233 344 10 51 chr9 100964935 100965033 -23111139 - B1_Mur3 SINE Alu -55 94 1 9 1355 656 232 137 0 chr9 100965033 100965113 -23111059 - ID_B1 SINE B4 -121 103 1 9 1355 228 279 228 0 chr9 100965189 100965268 -23110904 - B1F SINE Alu -7 142 46 9 1355 243 281 0 0 chr9 100965738 100965795 -23110377 - B1F SINE Alu -92 57 1 9 1355 401 231 16 1 chr9 100966061 100966147 -23110025 - RSINE1 SINE B4 -202 90 3 9 1355 496 302 8 8 chr9 100966214 100966341 -23109831 - B4A SINE B4 -165 127 1 9 1355 395 306 36 36 chr9 100966394 100966533 -23109639 + ID_B1 SINE B4 80 218 -6 9 1355 3476 47 0 7 chr9 100967241 100967666 -23108506 - L1Md_T LINE L1 0 6582 6161 1 1355 328 245 133 41 chr9 100967847 100967945 -23108227 + PB1D10 SINE Alu 1 107 -10 1 1355 1531 207 60 33 chr9 100967947 100968311 -23107861 - ORR1C2 LTR MaLR -10 374 1 1 1355 272 226 16 0 chr9 100968339 100968401 -23107771 + RSINE1 SINE B4 8 70 -95 1 1355 297 0 0 0 chr9 100968412 100968445 -23107727 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1355 313 99 0 0 chr9 100968476 100968526 -23107646 - B1_Mur2 SINE Alu -20 129 80 1 1355 559 213 49 8 chr9 100968723 100968846 -23107326 + B1_Mur2 SINE Alu 14 141 -8 1 1355 1181 93 35 6 chr9 100969177 100969350 -23106822 + B2_Mm1t SINE B2 2 179 -14 1 1355 323 140 13 18 chr9 100969381 100969446 -23106726 + B2_Mm2 SINE B2 46 115 -83 1 1355 315 0 0 0 chr9 100969480 100969515 -23106657 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1355 434 294 7 40 chr9 100969573 100969722 -23106450 - Tigger16a DNA Tigger -23 910 767 1 1355 461 255 27 27 chr9 100969773 100969922 -23106250 + L2c LINE L2 3239 3387 0 1 1355 620 254 32 26 chr9 100970372 100970562 -23105610 + ID_B1 SINE B4 1 191 -33 1 1355 198 0 0 0 chr9 100970574 100970596 -23105576 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1355 352 137 0 7 chr9 100970892 100970959 -23105213 + B1_Mur3 SINE Alu 61 124 -25 1 1355 189 132 0 0 chr9 100971458 100971496 -23104676 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1355 1352 69 21 21 chr9 100971569 100971761 -23104411 + B2_Mm2 SINE B2 2 193 -2 1 1355 1515 73 0 5 chr9 100971970 100972164 -23104008 - B2_Mm2 SINE B2 -1 194 2 1 1355 703 164 8 8 chr9 100972164 100972287 -23103885 + MTC LTR MaLR 2 124 -297 1 1355 531 31 0 0 chr9 100972291 100972356 -23103816 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 1355 265 208 0 36 chr9 100972464 100972519 -23103653 + ID_B1 SINE B4 155 207 -17 1 1355 605 252 23 74 chr9 100972537 100972713 -23103459 + B3A SINE B2 1 167 -31 1 1355 288 0 0 0 chr9 100972718 100972750 -23103422 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1355 307 306 15 110 chr9 100972758 100972836 -23103336 - PB1 SINE Alu -4 123 48 1 1355 1479 57 15 25 chr9 100972836 100973033 -23103139 - B2_Mm2 SINE B2 0 195 1 1 1355 307 306 15 110 chr9 100973033 100973090 -23103082 - PB1 SINE Alu -80 47 1 1 1355 1177 203 132 34 chr9 100973096 100973422 -23102750 - ORR1D2 LTR MaLR -8 362 5 1 1355 718 199 50 29 chr9 100973569 100973709 -23102463 - B1_Mur2 SINE Alu -5 144 2 1 1355 1330 83 27 11 chr9 100973856 100974039 -23102133 - B2_Mm2 SINE B2 -8 187 2 1 1355 1100 83 14 0 chr9 100974061 100974206 -23101966 - B1_Mus1 SINE Alu 0 148 2 1 1355 548 214 170 7 chr9 100974216 100974357 -23101815 - B3 SINE B2 -10 206 43 1 1355 400 210 69 10 chr9 100974636 100974737 -23101435 + ID_B1 SINE B4 83 189 -35 1 1355 339 25 0 0 chr9 100974825 100974865 -23101307 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1 1355 1001 92 0 21 chr9 100974865 100975010 -23101162 - B1_Mm SINE Alu -5 142 1 1 1355 225 0 0 0 chr9 100975010 100975035 -23101137 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1355 222 118 0 0 chr9 100975408 100975442 -23100730 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1355 268 238 58 23 chr9 100975480 100975566 -23100606 - L1M5 LINE L1 -514 5610 5522 1 1355 312 253 54 11 chr9 100975582 100975674 -23100498 + PB1D10 SINE Alu 17 112 -5 1 1355 317 155 35 0 chr9 100975688 100975746 -23100426 - MER53 DNA hAT -3 190 131 1 1355 262 202 191 0 chr9 100975797 100975886 -23100286 + L1MC3 LINE L1 7490 7595 -190 1 1355 226 341 74 51 chr9 100975899 100976075 -23100097 + ORR1D1 LTR MaLR 11 190 -184 1 1355 1099 70 35 0 chr9 100976497 100976639 -23099533 - B1_Mus2 SINE Alu 0 147 1 1 1355 25 31 0 0 chr9 100979404 100979436 -23096736 + AT_rich Low_complexity Low_complexity 1 32 0 1 1355 442 297 0 0 chr9 100979797 100979908 -23096264 - PB1D10 SINE Alu -2 115 5 1 1355 198 71 0 0 chr9 100981039 100981067 -23095105 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1355 410 263 35 0 chr9 100981067 100981181 -23094991 - PB1D7 SINE Alu 0 120 3 1 1355 812 227 57 0 chr9 100981286 100981480 -23094692 - B3 SINE B2 -10 206 2 1 1355 742 234 10 111 chr9 100982472 100982886 -23093286 - ORR1B2 LTR MaLR -28 346 6 1 1355 290 239 37 35 chr9 100983014 100983142 -23093030 - B3A SINE B2 -46 170 43 1 1355 551 186 164 31 chr9 100983142 100983270 -23092902 - B1_Mur4 SINE Alu -2 148 4 1 1355 290 264 64 77 chr9 100983270 100983314 -23092858 - B3A SINE B2 -156 42 1 1 1355 551 229 68 8 chr9 100983341 100983473 -23092699 - B1_Mur1 SINE Alu -9 140 1 1 1355 492 241 0 102 chr9 100983507 100983664 -23092508 - B3 SINE B2 -7 209 69 1 1355 640 236 83 29 chr9 100983811 100984016 -23092156 - B3 SINE B2 0 216 1 1 1355 753 200 26 67 chr9 100984733 100984926 -23091246 + B2_Mm2 SINE B2 2 186 -9 1 1355 374 346 12 36 chr9 100984936 100985104 -23091068 - RSINE1 SINE B4 -1 164 1 1 1355 523 93 0 0 chr9 100985257 100985332 -23090840 - B2_Mm2 SINE B2 -120 75 1 1 1355 822 68 0 0 chr9 100985332 100985445 -23090727 + B2_Mm1t SINE B2 74 186 -7 1 1355 997 121 145 0 chr9 100985588 100985754 -23090418 - B2_Mm2 SINE B2 -4 191 2 1 1355 268 267 22 34 chr9 100985836 100985925 -23090247 + ID_B1 SINE B4 86 173 -51 1 1355 254 287 78 19 chr9 100985925 100985939 -23090233 + B1F SINE Alu 5 113 -36 1 1355 218 246 49 66 chr9 100985946 100986007 -23090165 + ID4 SINE ID 22 81 -2 1 1355 570 263 77 33 chr9 100986013 100986026 -23090146 - B4 SINE B4 -102 190 178 1 1355 318 26 0 0 chr9 100986026 100986065 -23090107 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1355 570 263 77 33 chr9 100986065 100986232 -23089940 - B4 SINE B4 -115 177 2 1 1355 406 275 0 21 chr9 100986302 100986395 -23089777 - RSINE1 SINE B4 -74 91 1 1 1355 777 184 69 43 chr9 100986404 100986637 -23089535 - L1MB2 LINE L1 -223 5948 5710 1 1355 772 296 102 64 chr9 100986665 100986889 -23089283 + Tigger7 DNA MER2_type 9 244 -2247 1 1355 1026 98 28 0 chr9 100986889 100987032 -23089140 - B1_Mus1 SINE Alu 0 148 2 1 1355 772 296 102 64 chr9 100987032 100987211 -23088961 + Tigger7 DNA MER2_type 245 427 -2064 1 1355 854 48 184 8 chr9 100987270 100987395 -23088777 - B1_Mus1 SINE Alu 0 148 2 1 1355 673 234 44 34 chr9 100987403 100987604 -23088568 - B3A SINE B2 -10 185 2 1 1355 318 282 59 10 chr9 100988080 100988194 -23087978 + B1F1 SINE Alu 1 117 0 1 1355 295 322 23 55 chr9 100988208 100988336 -23087836 + PB1 SINE Alu 4 127 0 1 1355 561 30 0 0 chr9 100988994 100989061 -23087111 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1355 322 271 108 54 chr9 100989067 100989270 -23086902 - L1M2 LINE L1 -1076 5070 4854 1 1355 790 101 139 0 chr9 100994277 100994406 -23081766 - B2_Mm2 SINE B2 -48 147 1 1 1355 682 189 29 43 chr9 100994435 100994573 -23081599 + B1_Mur4 SINE Alu 2 137 -13 1 1355 219 312 149 11 chr9 100994602 100994696 -23081476 - ID_B1 SINE B4 -40 184 78 1 1355 216 278 0 0 chr9 100994868 100994922 -23081250 - B4A SINE B4 -238 54 1 1 1355 724 238 17 35 chr9 100994948 100995122 -23081050 - B3 SINE B2 -9 207 37 1 1355 396 178 32 10 chr9 100995731 100995828 -23080344 + B1_Mur1 SINE Alu 1 133 -16 1 1355 23 0 0 0 chr9 100996167 100996190 -23079982 + AT_rich Low_complexity Low_complexity 1 23 0 1 1355 1313 74 25 41 chr9 100996277 100996474 -23079698 - B2_Mm2 SINE B2 0 195 2 1 1355 822 28 0 0 chr9 100997116 100997225 -23078947 + B2_Mm1a SINE B2 84 192 -1 1 1355 1217 33 0 0 chr9 100997267 100997420 -23078752 - B2_Mm1a SINE B2 -39 154 2 1 1355 228 135 0 0 chr9 100997483 100997520 -23078652 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 1 1355 1157 50 0 7 chr9 100997523 100997665 -23078507 - B1_Mm SINE Alu -5 142 2 1 1355 429 245 49 35 chr9 100997668 100997812 -23078360 - B1_Mus2 SINE Alu -1 146 1 1 1355 269 26 26 0 chr9 100997817 100997855 -23078317 + (TTTTTA)n Simple_repeat Simple_repeat 4 42 0 1 1355 726 221 29 0 chr9 100997862 100998002 -23078170 - B1_Mur3 SINE Alu -4 145 2 1 1355 1211 88 43 11 chr9 100998455 100998639 -23077533 - B2_Mm2 SINE B2 -5 190 1 1 1355 551 211 29 9 chr9 100998696 100998801 -23077371 - PB1D10 SINE Alu -10 107 1 1 1355 525 221 71 29 chr9 100998801 100998940 -23077232 - B1F SINE Alu -3 146 1 1 1355 809 150 49 12 chr9 100999289 100999451 -23076721 - ORR1C1 LTR MaLR 0 378 211 1 1355 351 292 145 23 chr9 100999498 100999712 -23076460 + L1_Mur3 LINE L1 4528 4767 -1113 1 1355 269 239 96 64 chr9 101000859 101000953 -23075219 - PB1D10 SINE Alu -5 112 16 1 1355 241 220 0 0 chr9 101001504 101001554 -23074618 + B4A SINE B4 1 50 -242 2 1355 489 274 126 61 chr9 101001730 101001991 -23074181 - B4A SINE B4 -14 278 1 3 1355 664 200 13 46 chr9 101002213 101002365 -23073807 - B1_Mur2 SINE Alu -2 147 1 4 1355 27 29 0 0 chr9 101005315 101005349 -23070823 + AT_rich Low_complexity Low_complexity 1 34 0 5 1355 198 167 0 0 chr9 101005480 101005516 -23070656 + T-rich Low_complexity Low_complexity 1 36 0 6 1355 1108 101 191 0 chr9 101007702 101007891 -23068281 + URR1A DNA MER1_type 2 226 0 7 1355 226 267 40 0 chr9 101008211 101008286 -23067886 + ID4 SINE ID 2 79 -4 8 1355 357 246 22 137 chr9 101008548 101008729 -23067443 - PB1D7 SINE Alu -5 144 10 9 1355 1004 191 39 20 chr9 101010951 101011154 -23065018 - B3 SINE B2 -9 207 1 1 1355 280 194 7 132 chr9 101012007 101012093 -23064079 + PB1D9 SINE Alu 18 97 -52 1 1355 233 309 83 0 chr9 101012158 101012242 -23063930 + MER20 DNA MER1_type 46 136 -83 1 1355 1132 43 50 0 chr9 101012815 101012955 -23063217 - B1_Mus1 SINE Alu 0 148 2 1 1355 659 301 7 13 chr9 101013000 101013155 -23063017 + B3A SINE B2 3 156 -42 1 1355 506 68 27 0 chr9 101013163 101013237 -23062935 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1 1355 419 186 35 0 chr9 101013248 101013334 -23062838 + PB1D9 SINE Alu 31 119 -1 1 1355 232 246 0 97 chr9 101013863 101013935 -23062237 - PB1D10 SINE Alu -46 71 7 1 1355 567 255 20 52 chr9 101013871 101014024 -23062148 - ID_B1 SINE B4 -76 148 1 1 1355 1500 54 11 0 chr9 101014050 101014234 -23061938 + B2_Mm1t SINE B2 2 187 -6 1 1355 213 39 0 0 chr9 101014244 101014270 -23061902 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1355 602 230 191 0 chr9 101014443 101014621 -23061551 - B3 SINE B2 -4 212 1 2 1355 308 315 37 9 chr9 101014653 101014762 -23061410 - PB1D7 SINE Alu -6 114 3 2 1355 529 266 17 87 chr9 101014913 101015086 -23061086 - RSINE1 SINE B4 -3 162 2 2 1355 322 339 150 25 chr9 101015139 101015339 -23060833 - B4A SINE B4 -12 280 56 2 1355 234 91 0 0 chr9 101016005 101016038 -23060134 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1355 888 26 18 0 chr9 101016038 101016151 -23060021 - B1_Mus1 SINE Alu 0 148 34 2 1355 432 171 0 0 chr9 101016193 101016275 -23059897 + CT-rich Low_complexity Low_complexity 3 84 0 2 1355 580 124 66 9 chr9 101016285 101016391 -23059781 - B1_Mus2 SINE Alu -2 145 34 2 1355 273 297 47 0 chr9 101016492 101016556 -23059616 - MIRb SINE MIR -171 97 31 2 1355 521 291 18 37 chr9 101017357 101017521 -23058651 + B3A SINE B2 2 162 -36 3 1355 650 239 17 0 chr9 101017530 101017647 -23058525 + B1_Mur1 SINE Alu 1 119 -30 3 1355 413 261 0 0 chr9 101017624 101017712 -23058460 - B3A SINE B2 -92 106 19 3 1355 189 0 0 0 chr9 101017718 101017739 -23058433 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1355 1422 59 11 5 chr9 101017854 101018040 -23058132 + B2_Mm1t SINE B2 1 187 -6 3 1355 587 213 2 31 chr9 101018041 101018210 -23057962 + ORR1D2 LTR MaLR 249 405 -14 3 1355 250 183 183 0 chr9 101018255 101018315 -23057857 - ID4_ SINE ID -11 72 2 3 1355 754 243 54 47 chr9 101018470 101018684 -23057488 - B3 SINE B2 -4 189 1 3 1355 625 271 108 5 chr9 101018723 101019008 -23057164 + MTEb LTR MaLR 63 377 -2 3 1355 482 306 111 5 chr9 101019114 101019321 -23056851 + MER58B DNA MER1_type 4 232 -109 3 1355 510 316 37 0 chr9 101019562 101019698 -23056474 + RSINE1 SINE B4 3 143 -22 4 1355 363 44 0 0 chr9 101019729 101019774 -23056398 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 1355 1659 31 0 0 chr9 101019831 101020022 -23056150 - B2_Mm1t SINE B2 -1 192 2 4 1355 230 309 60 0 chr9 101020597 101020681 -23055491 - PB1D10 SINE Alu -16 101 13 4 1355 1202 86 28 11 chr9 101020946 101021123 -23055049 - B2_Mm2 SINE B2 -15 180 1 4 1355 941 166 94 33 chr9 101021535 101021747 -23054425 - URR1B DNA MER1_type 0 225 1 4 1355 3096 122 19 2 chr9 101021943 101022462 -23053710 - L1_Mur1 LINE L1 -1210 4667 4140 4 1355 3261 96 45 0 chr9 101022457 101023007 -23053165 - L1_Mur1 LINE L1 -2215 3671 3097 4 1355 5528 134 15 11 chr9 101023007 101023968 -23052204 + Lx2B LINE L1 4670 5633 -244 4 1355 406 55 0 0 chr9 101023979 101024034 -23052138 + Lx5 LINE L1 5589 5643 -1407 4 1355 406 55 0 0 chr9 101024041 101024096 -23052076 + Lx5 LINE L1 5589 5643 -1407 4 1355 665 91 10 0 chr9 101024101 101024200 -23051972 + Lx2B LINE L1 5587 5686 -1314 4 1355 7103 152 17 11 chr9 101024265 101025580 -23050592 + Lx2B LINE L1 5659 6980 -20 4 1355 1278 64 35 0 chr9 101025887 101026060 -23050112 + B2_Mm2 SINE B2 1 179 -16 4 1355 228 302 116 0 chr9 101026374 101026460 -23049712 + LTR33 LTR ERVL 266 361 -154 5 1355 627 192 44 15 chr9 101027706 101027851 -23048321 - B3A SINE B2 -47 146 1 5 1355 261 194 103 15 chr9 101027909 101027977 -23048195 - RSINE1 SINE B4 -8 157 84 5 1355 308 246 36 18 chr9 101028375 101028487 -23047685 - B1F2 SINE Alu -9 140 27 5 1355 241 155 51 17 chr9 101028886 101028945 -23047227 - L1MB4 LINE L1 -51 6129 6069 5 1355 459 0 0 0 chr9 101029567 101029618 -23046554 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1355 1208 34 14 0 chr9 101029684 101029830 -23046342 + B1_Mus1 SINE Alu 1 148 0 5 1355 501 326 85 43 chr9 101029983 101030265 -23045907 - HAL1 LINE L1 -434 2073 1780 5 1355 267 54 0 0 chr9 101030324 101030361 -23045811 + (TCTG)n Simple_repeat Simple_repeat 1 37 0 5 1355 726 264 88 62 chr9 101030369 101030595 -23045577 - B4 SINE B4 -18 274 43 5 1355 34554 63 2 14 chr9 101030608 101036757 -23039415 - L1Md_F2 LINE L1 -1 6581 511 6 1355 29 28 0 0 chr9 101036772 101036808 -23039364 + AT_rich Low_complexity Low_complexity 1 36 0 6 1355 957 187 217 68 chr9 101037094 101037490 -23038682 + Lx7 LINE L1 7242 7696 0 6 1355 2373 72 60 3 chr9 101037499 101037835 -23038337 - Lx4A LINE L1 -184 6874 6520 6 1355 565 226 7 14 chr9 101037836 101037984 -23038188 - L1M2 LINE L1 -1435 4708 4562 6 1355 462 264 7 19 chr9 101038384 101038491 -23037681 - L1_Mur3 LINE L1 -1987 3860 3753 6 1355 2651 121 218 2 chr9 101038491 101038972 -23037200 - RMER4B LTR ERVK 0 585 1 6 1355 462 256 7 15 chr9 101038972 101039018 -23037154 - L1_Mur3 LINE L1 -2128 3752 3709 6 1355 356 268 130 0 chr9 101039018 101039141 -23037031 - Lx6 LINE L1 -23 7437 7299 6 1355 738 165 60 8 chr9 101039176 101039310 -23036862 - B1_Mur1 SINE Alu 0 149 9 6 1355 344 218 71 18 chr9 101039324 101039436 -23036736 - L1_Mur3 LINE L1 -2271 3606 3489 6 1355 411 100 0 0 chr9 101039437 101039507 -23036665 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1355 270 0 0 0 chr9 101039507 101039537 -23036635 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 1355 704 265 28 56 chr9 101039583 101039763 -23036409 - B3A SINE B2 -15 183 9 7 1355 239 125 0 40 chr9 101039876 101039926 -23036246 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 7 1355 783 266 103 46 chr9 101039935 101040538 -23035634 - L1_Mur3 LINE L1 -2521 3359 2723 6 1355 242 250 0 0 chr9 101040552 101040616 -23035556 - L1M2 LINE L1 -3456 2687 2624 6 1355 1058 199 45 0 chr9 101040678 101040879 -23035293 - B3 SINE B2 0 216 7 7 1355 1466 298 57 7 chr9 101040889 101041589 -23034583 - L1_Rod LINE L1 -3350 2497 1763 7 1355 614 58 0 0 chr9 101041591 101041678 -23034494 - L1Md_F2 LINE L1 -12 6570 6484 7 1355 5801 198 58 32 chr9 101041696 101042452 -23033720 + RMER12 LTR ERVK 1 767 -555 7 1355 207 0 0 0 chr9 101042452 101042475 -23033697 + (TCCA)n Simple_repeat Simple_repeat 1 23 0 7 1355 5801 198 58 32 chr9 101042475 101043006 -23033166 + RMER12 LTR ERVK 768 1321 -1 7 1355 252 143 0 0 chr9 101043244 101043286 -23032886 + (T)n Simple_repeat Simple_repeat 1 42 0 7 1355 1196 68 0 0 chr9 101043286 101043434 -23032738 - B1_Mus1 SINE Alu 0 148 1 7 1355 524 178 169 48 chr9 101043438 101043562 -23032610 - B1_Mur2 SINE Alu -6 143 5 8 1355 621 310 28 39 chr9 101043636 101043817 -23032355 - ID_B1 SINE B4 -20 204 26 8 1355 247 232 127 79 chr9 101043858 101044087 -23032085 - L1M4 LINE L1 -3435 2711 2472 8 1355 629 157 103 17 chr9 101044107 101044224 -23031948 - B1_Mur4 SINE Alu 0 150 24 8 1355 230 258 50 110 chr9 101044140 101044240 -23031932 - MT2B LTR ERVL -339 262 169 8 1355 570 256 194 24 chr9 101044581 101044829 -23031343 + B4 SINE B4 3 292 0 8 1355 934 109 72 0 chr9 101045033 101045171 -23031001 - B1_Mus1 SINE Alu 0 148 1 8 1355 1239 89 33 16 chr9 101045202 101045384 -23030788 - B2_Mm1t SINE B2 -6 187 3 8 1355 734 195 174 17 chr9 101045384 101045439 -23030733 - B3 SINE B2 -15 201 137 8 1355 1086 141 136 0 chr9 101045439 101045637 -23030535 - URR1A DNA MER1_type -1 225 1 8 1355 734 195 174 17 chr9 101045637 101045753 -23030419 - B3 SINE B2 -80 136 3 8 1355 662 298 33 26 chr9 101046032 101046304 -23029868 - B4A SINE B4 -18 274 1 9 1355 785 179 29 0 chr9 101047056 101047196 -23028976 - B1_Mur1 SINE Alu -5 144 1 9 1355 370 325 33 8 chr9 101047196 101047317 -23028855 - B1F1 SINE Alu -10 139 16 9 1355 936 147 7 0 chr9 101047441 101047584 -23028588 - B1_Mur4 SINE Alu -5 145 2 9 1355 222 196 19 19 chr9 101047964 101048016 -23028156 + CT-rich Low_complexity Low_complexity 1 52 0 9 1355 682 246 149 5 chr9 101048016 101048204 -23027968 - ID_B1 SINE B4 -9 215 1 9 1355 22 56 0 0 chr9 101048566 101048602 -23027570 + AT_rich Low_complexity Low_complexity 1 36 0 9 1355 273 383 51 45 chr9 101048698 101049012 -23027160 - L4 LINE RTE -199 1830 1515 9 1355 221 175 0 0 chr9 101049039 101049079 -23027093 - ID4_ SINE ID -39 44 5 9 1355 226 311 26 51 chr9 101049216 101049294 -23026878 + MER5A DNA MER1_type 112 187 -2 9 1355 751 251 38 11 chr9 101049507 101049699 -23026473 - B3 SINE B2 -8 187 1 1 1355 380 297 36 0 chr9 101050157 101050268 -23025904 - PB1 SINE Alu -12 115 1 1 1355 723 116 0 0 chr9 101050274 101050386 -23025786 + (CAGAC)n Simple_repeat Simple_repeat 1 112 0 1 1355 568 198 10 20 chr9 101050660 101050772 -23025400 + B1_Mur3 SINE Alu 2 120 0 1 1355 378 0 0 0 chr9 101051088 101051130 -23025042 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1355 1208 43 0 0 chr9 101051132 101051272 -23024900 - B1_Mm SINE Alu -6 141 2 1 1355 222 62 0 0 chr9 101051379 101051411 -23024761 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1355 723 176 80 0 chr9 101051415 101051540 -23024632 - B1_Mus1 SINE Alu -12 136 2 1 1355 240 32 0 0 chr9 101052000 101052012 -23024160 + (TA)n Simple_repeat Simple_repeat 2 13 0 1 1355 291 54 0 0 chr9 101052012 101052049 -23024123 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1355 240 32 0 0 chr9 101052049 101052067 -23024105 + (TA)n Simple_repeat Simple_repeat 2 19 0 1 1355 500 281 88 7 chr9 101052084 101052220 -23023952 + RSINE1 SINE B4 2 148 -17 1 1355 2014 142 4 93 chr9 101052390 101052780 -23023392 + ORR1B1 LTR MaLR 1 394 0 1 1355 283 303 0 38 chr9 101053760 101053839 -23022333 + RSINE1 SINE B4 3 78 -87 1 1355 1130 228 5 9 chr9 101053981 101054198 -23021974 + B3 SINE B2 1 216 0 1 1355 845 156 0 29 chr9 101054284 101054423 -23021749 - B1_Mur4 SINE Alu -14 136 2 1 1355 185 178 22 0 chr9 101054526 101054571 -23021601 + A-rich Low_complexity Low_complexity 4 49 0 1 1355 249 312 13 13 chr9 101054591 101054669 -23021503 + MIRm SINE MIR 53 130 -146 1 1355 683 282 18 0 chr9 101054705 101054875 -23021297 + B3 SINE B2 9 181 -35 1 1355 981 167 183 0 chr9 101055008 101055194 -23020978 - URR1A DNA MER1_type 0 226 7 1 1355 778 89 0 16 chr9 101055460 101055586 -23020586 + L1Md_F2 LINE L1 6452 6575 -7 1 1356 11156 202 104 48 chr9 101056878 101057369 -23018803 + Lx7 LINE L1 2289 2826 -4870 1 1356 241 233 0 40 chr9 101057369 101057388 -23018784 + ORR1B1-int LTR MaLR 634 647 -862 1 1356 948 87 0 0 chr9 101057388 101057514 -23018658 + B1_Mus1 SINE Alu 2 127 -21 1 1356 11156 202 104 48 chr9 101057514 101061026 -23015146 + Lx7 LINE L1 2827 6678 -1018 1 1356 493 299 42 0 chr9 101061026 101061170 -23015002 - RSINE1 SINE B4 -12 153 4 1 1356 737 271 12 49 chr9 101061349 101061564 -23014608 - B3A SINE B2 -2 191 3 1 1356 887 221 109 10 chr9 101061618 101061810 -23014362 + B3 SINE B2 6 216 0 1 1356 307 270 197 0 chr9 101062020 101062157 -23014015 - Charlie25 DNA MER1_type -80 2444 2281 1 1356 525 346 86 7 chr9 101062542 101062833 -23013339 - Charlie25 DNA MER1_type -761 1763 1450 1 1356 657 322 104 90 chr9 101063040 101063638 -23012534 - Charlie25 DNA MER1_type -1659 865 260 1 1356 414 253 41 21 chr9 101063916 101064013 -23012159 - PB1D7 SINE Alu 0 120 22 1 1356 542 244 76 8 chr9 101064113 101064245 -23011927 - RSINE1 SINE B4 -14 151 11 1 1356 400 235 211 6 chr9 101064357 101064528 -23011644 - L2a LINE L2 -5 3421 3216 1 1356 195 42 0 0 chr9 101064668 101064692 -23011480 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1356 1013 247 108 39 chr9 101064702 101065295 -23010877 + L1MA5 LINE L1 3816 4449 -1694 1 1356 36928 3 0 0 chr9 101065334 101070497 -23005675 + L1Md_A LINE L1 423 5586 -297 1 1356 9093 1 0 0 chr9 101070497 101071493 -23004679 + L1Md_A LINE L1 5587 6582 0 1 1356 916 309 102 38 chr9 101071496 101071945 -23004227 + L1MA5 LINE L1 4428 4965 -1178 1 1356 417 86 0 0 chr9 101071945 101072003 -23004169 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1356 916 314 105 40 chr9 101072003 101072401 -23003771 + L1MA5 LINE L1 4935 5333 -547 1 1356 832 252 101 24 chr9 101072401 101072649 -23003523 + B4A SINE B4 3 269 -23 1 1356 333 93 0 0 chr9 101072661 101072715 -23003457 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1356 2195 12 4 0 chr9 101072792 101073041 -23003131 + L1_Mus1 LINE L1 6318 6567 0 1 1356 1491 264 87 34 chr9 101073068 101073711 -23002461 + Lx8 LINE L1 6797 7473 0 1 1356 447 246 108 31 chr9 101073798 101073928 -23002244 - B1F SINE Alu -9 140 1 1 1356 284 268 0 73 chr9 101074016 101074153 -23002019 + L1MA5 LINE L1 5324 5450 -430 1 1356 481 197 182 32 chr9 101074168 101074294 -23001878 + B3A SINE B2 4 148 -50 1 1356 1133 188 186 25 chr9 101074350 101074672 -23001500 + ORR1D1 LTR MaLR 1 374 0 1 1356 862 281 70 36 chr9 101074708 101075151 -23001021 + L1MA5 LINE L1 5494 5915 -1558 1 1356 910 242 24 9 chr9 101075151 101075364 -23000808 - B3 SINE B2 0 216 1 1 1356 455 248 52 78 chr9 101075696 101075763 -23000409 - L2 LINE L2 -541 2878 2812 1 1356 1425 72 0 20 chr9 101075763 101075961 -23000211 - B2_Mm2 SINE B2 -1 194 1 1 1356 455 248 52 78 chr9 101075961 101076046 -23000126 - L2 LINE L2 -608 2811 2730 1 1356 23 0 0 0 chr9 101076189 101076212 -22999960 + AT_rich Low_complexity Low_complexity 1 23 0 1 1356 327 113 0 0 chr9 101076222 101076275 -22999897 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1356 424 336 12 50 chr9 101076285 101076424 -22999748 - RSINE1 SINE B4 -8 157 24 1 1356 590 257 0 20 chr9 101076424 101076575 -22999597 - B1_Mur2 SINE Alu -1 148 1 1 1356 424 336 12 50 chr9 101076575 101076595 -22999577 - RSINE1 SINE B4 -142 23 4 1 1356 225 240 38 62 chr9 101076808 101076888 -22999284 + ORR1E LTR MaLR 11 88 -271 1 1356 926 212 49 5 chr9 101077183 101077387 -22998785 + B3 SINE B2 3 215 -1 1 1356 1165 58 0 0 chr9 101078340 101078479 -22997693 + B1_Mus1 SINE Alu 1 139 -9 1 1356 303 298 74 100 chr9 101078734 101078924 -22997248 - L1MC4 LINE L1 -14 7868 7684 1 1356 369 231 47 24 chr9 101078987 101079150 -22997022 - L1MC4 LINE L1 -309 7573 7399 1 1356 320 203 31 0 chr9 101079565 101079629 -22996543 + MTD LTR MaLR 354 419 0 1 1356 816 301 60 0 chr9 101079630 101079896 -22996276 - Lx8 LINE L1 -292 7181 6900 1 1356 434 245 41 0 chr9 101079962 101079981 -22996191 + B4 SINE B4 65 87 -205 1 1356 624 137 0 0 chr9 101079981 101080076 -22996096 + B1_Mus2 SINE Alu 1 95 -52 1 1356 2056 121 13 0 chr9 101080058 101080364 -22995808 + ORR1A2 LTR MaLR 18 327 0 1 1356 349 200 0 30 chr9 101080364 101080431 -22995741 + B1_Mur2 SINE Alu 85 149 0 1 1356 473 211 141 90 chr9 101080551 101080707 -22995465 + B4A SINE B4 129 292 0 1 1356 715 204 215 0 chr9 101080997 101081169 -22995003 - B3 SINE B2 -6 210 2 1 1356 229 236 204 43 chr9 101081621 101081714 -22994458 - PB1D10 SINE Alu -3 114 7 1 1356 228 297 88 0 chr9 101082259 101082350 -22993822 + Charlie15a DNA MER1_type 125 223 -1 1 1356 677 176 41 34 chr9 101083320 101083467 -22992705 + B1_Mus1 SINE Alu 1 148 0 1 1356 422 307 0 3 chr9 101084146 101084260 -22991912 - B1F SINE Alu -8 112 1 1 1356 259 197 91 0 chr9 101085280 101085346 -22990826 - B1_Mur1 SINE Alu -1 148 77 1 1356 21 36 0 0 chr9 101085472 101085500 -22990672 + AT_rich Low_complexity Low_complexity 1 28 0 1 1356 942 93 0 0 chr9 101085609 101085738 -22990434 - B1_Mus1 SINE Alu -9 139 11 1 1356 2028 142 149 11 chr9 101086228 101086598 -22989574 + MTC LTR MaLR 1 421 0 1 1356 954 204 73 0 chr9 101086619 101086825 -22989347 + URR1A DNA MER1_type 2 222 -4 1 1356 643 262 60 27 chr9 101086874 101087058 -22989114 + ID_B1 SINE B4 15 204 -20 1 1356 485 220 0 29 chr9 101087054 101087157 -22989015 + B1_Mur3 SINE Alu 43 142 -7 1 1356 599 287 112 23 chr9 101087338 101087598 -22988574 - B4A SINE B4 -7 285 3 1 1356 508 186 250 42 chr9 101087806 101087974 -22988198 - B3 SINE B2 -12 204 2 1 1356 756 190 22 0 chr9 101087976 101088113 -22988059 - B1F2 SINE Alu -7 142 3 1 1356 200 182 0 0 chr9 101088482 101088515 -22987657 + GA-rich Low_complexity Low_complexity 4 36 0 1 1356 1188 41 0 39 chr9 101088645 101088798 -22987374 - B1_Mus1 SINE Alu -1 147 1 1 1356 761 242 28 6 chr9 101089036 101089215 -22986957 + B3A SINE B2 1 183 -15 1 1356 1960 238 108 17 chr9 101090341 101090936 -22985236 + Lx7 LINE L1 6731 7379 -317 1 1356 303 49 0 0 chr9 101090951 101090992 -22985180 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1356 228 67 0 0 chr9 101092672 101092702 -22983470 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1356 661 208 60 34 chr9 101092820 101093005 -22983167 + B3A SINE B2 2 191 -25 1 1356 244 363 78 0 chr9 101093133 101093235 -22982937 - PB1D10 SINE Alu -7 110 1 1 1356 999 174 7 5 chr9 101093693 101094131 -22982041 + GA-rich Low_complexity Low_complexity 1 438 0 1 1356 1115 249 140 7 chr9 101094223 101094494 -22981678 - ORR1D2 LTR MaLR 0 370 64 1 1356 238 312 96 26 chr9 101094855 101094970 -22981202 - L3 LINE CR1 -740 3749 3627 1 1356 273 239 15 15 chr9 101095777 101095845 -22980327 + B1_Mm SINE Alu 59 126 -21 1 1356 672 152 0 0 chr9 101095845 101095963 -22980209 + GA-rich Low_complexity Low_complexity 1 118 0 1 1356 654 49 0 0 chr9 101096035 101096117 -22980055 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1356 349 196 0 5 chr9 101096124 101096196 -22979976 + ORR1D1 LTR MaLR 302 374 0 1 1356 229 151 38 0 chr9 101096294 101096347 -22979825 + GA-rich Low_complexity Low_complexity 2 56 0 1 1356 213 39 0 0 chr9 101097168 101097194 -22978978 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1356 952 230 27 9 chr9 101097539 101097758 -22978414 + ID_B1 SINE B4 1 223 -1 1 1356 724 241 31 20 chr9 101098162 101098357 -22977815 - B3 SINE B2 -19 197 1 1 1356 180 0 0 0 chr9 101098379 101098399 -22977773 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1356 22 70 0 0 chr9 101099752 101099795 -22976377 + AT_rich Low_complexity Low_complexity 1 43 0 1 1356 748 299 0 24 chr9 101100355 101100523 -22975649 + RSINE1 SINE B4 2 165 0 1 1356 218 314 58 84 chr9 101100523 101100546 -22975626 + B2_Mm2 SINE B2 1 186 -9 1 1356 21 71 0 0 chr9 101101730 101101772 -22974400 + AT_rich Low_complexity Low_complexity 1 42 0 1 1356 30 27 0 0 chr9 101102187 101102224 -22973948 + AT_rich Low_complexity Low_complexity 1 37 0 1 1356 194 246 55 55 chr9 101102380 101102453 -22973719 - MIRm SINE MIR -12 264 192 2 1356 453 200 44 0 chr9 101102593 101102683 -22973489 + PB1D9 SINE Alu 7 100 -20 2 1356 24 77 0 0 chr9 101102797 101102849 -22973323 + AT_rich Low_complexity Low_complexity 1 52 0 2 1356 264 137 81 14 chr9 101103277 101103351 -22972821 - L1M4 LINE L1 -281 5897 5819 2 1356 1075 137 136 5 chr9 101103484 101103682 -22972490 + URR1B DNA MER1_type 1 224 -1 2 1356 237 295 0 103 chr9 101104196 101104283 -22971889 + ID4_ SINE ID 4 81 -2 2 1356 507 17 0 0 chr9 101104287 101104347 -22971825 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1356 472 202 154 0 chr9 101104805 101104909 -22971263 + PB1 SINE Alu 5 124 -3 2 1356 26 0 0 0 chr9 101105011 101105037 -22971135 + AT_rich Low_complexity Low_complexity 1 26 0 2 1356 801 217 0 0 chr9 101105037 101105180 -22970992 - B1_Mur1 SINE Alu -5 144 2 2 1356 1232 244 101 0 chr9 101105787 101106115 -22970057 + MTD LTR MaLR 1 361 -58 2 1356 25 0 0 0 chr9 101106274 101106299 -22969873 + AT_rich Low_complexity Low_complexity 1 25 0 2 1356 795 299 25 39 chr9 101106625 101106910 -22969262 + B4A SINE B4 1 281 -11 2 1356 23 0 0 0 chr9 101106981 101107004 -22969168 + AT_rich Low_complexity Low_complexity 1 23 0 2 1356 260 364 0 0 chr9 101107360 101107426 -22968746 - PB1 SINE Alu -61 66 1 2 1356 234 314 0 41 chr9 101107361 101107434 -22968738 - B4A SINE B4 -143 149 80 2 1356 519 278 168 21 chr9 101107588 101107779 -22968393 - MER58A DNA MER1_type -5 219 1 2 1356 183 80 0 0 chr9 101108060 101108085 -22968087 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 1356 251 72 0 23 chr9 101108212 101108255 -22967917 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1356 218 286 0 0 chr9 101108255 101108304 -22967868 + ID4_ SINE ID 2 50 -33 2 1356 988 258 26 22 chr9 101108919 101109192 -22966980 - B4A SINE B4 -18 274 1 2 1356 249 33 0 0 chr9 101109241 101109271 -22966901 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1356 293 160 80 0 chr9 101109296 101109346 -22966826 + MER58D DNA MER1_type 333 386 0 2 1356 21 36 0 0 chr9 101109440 101109468 -22966704 + AT_rich Low_complexity Low_complexity 1 28 0 2 1356 260 211 10 10 chr9 101110966 101111028 -22965144 - ID4 SINE ID -89 63 2 2 1356 392 300 35 14 chr9 101111028 101111170 -22965002 - B1F1 SINE Alu -2 147 3 2 1356 667 328 26 5 chr9 101111199 101111389 -22964783 + B3A SINE B2 2 195 -3 2 1356 545 217 17 25 chr9 101111392 101111510 -22964662 + PB1D9 SINE Alu 2 118 -2 2 1356 500 230 97 45 chr9 101111551 101111706 -22964466 - RSINE1 SINE B4 0 165 3 2 1356 863 146 20 14 chr9 101111754 101111900 -22964272 - B1_Mur2 SINE Alu -1 148 2 2 1356 288 0 0 0 chr9 101112426 101112458 -22963714 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1356 228 135 0 0 chr9 101112461 101112498 -22963674 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1356 1221 89 65 0 chr9 101112876 101113045 -22963127 + B2_Mm2 SINE B2 2 181 -14 2 1356 207 0 0 0 chr9 101115851 101115874 -22960298 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1356 785 191 16 0 chr9 101116162 101116288 -22959884 + B1_Mus1 SINE Alu 1 128 -20 2 1356 306 50 0 0 chr9 101116288 101116328 -22959844 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 2 1356 630 319 180 30 chr9 101116723 101117434 -22958738 - L2a LINE L2 -4 3422 2597 2 1356 645 241 7 0 chr9 101117564 101117701 -22958471 - B1_Mur1 SINE Alu -9 140 3 2 1356 375 240 125 0 chr9 101117899 101117995 -22958177 - PB1D9 SINE Alu -8 112 5 2 1356 438 267 0 0 chr9 101118342 101118443 -22957729 - PB1D9 SINE Alu -19 101 1 2 1356 5758 84 10 17 chr9 101118616 101119123 -22957049 + L1VL2 LINE L1 183 687 -5648 2 1356 3123 61 10 2 chr9 101119123 101119516 -22956656 - MTA_Mm LTR MaLR 0 396 1 2 1356 13064 79 29 7 chr9 101119516 101121769 -22954403 + L1VL2 LINE L1 688 2988 -627 2 1356 25 0 0 0 chr9 101121899 101121924 -22954248 + AT_rich Low_complexity Low_complexity 1 25 0 2 1356 247 366 0 0 chr9 101121928 101122010 -22954162 - ID4 SINE ID 0 83 2 2 1356 241 254 0 0 chr9 101122062 101122117 -22954055 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 2 1356 556 274 22 41 chr9 101122122 101122390 -22953782 - L1M1 LINE L1 -525 5772 5491 2 1356 398 202 23 45 chr9 101122406 101122494 -22953678 - B3 SINE B2 0 216 131 2 1356 7088 69 30 1 chr9 101122518 101123520 -22952652 - L1_Mus3 LINE L1 -3 6635 5605 2 1356 27 49 0 0 chr9 101123925 101123966 -22952206 + AT_rich Low_complexity Low_complexity 1 41 0 2 1356 941 209 5 56 chr9 101124140 101124338 -22951834 + B3A SINE B2 11 198 0 2 1356 407 202 293 0 chr9 101124413 101124512 -22951660 - B1F1 SINE Alu -11 138 11 2 1356 285 159 27 55 chr9 101124478 101124551 -22951621 + YREP_Mm Unknown Unknown 273 343 -1469 2 1356 2346 187 41 12 chr9 101125717 101126231 -22949941 + RMER1B Other Other 305 833 -233 2 1356 4630 6 0 4 chr9 101126247 101126764 -22949408 - L1Md_A LINE L1 0 6582 6068 2 1356 4251 0 0 0 chr9 101126764 101127420 -22948752 + L1Md_A LINE L1 5421 6076 -506 2 1356 818 187 89 30 chr9 101127415 101127652 -22948520 + RMER1A Other Other 756 1006 -24 2 1356 1923 34 0 4 chr9 101128131 101128366 -22947806 + L1Md_F3 LINE L1 6350 6583 -1 2 1356 624 167 321 0 chr9 101129203 101129365 -22946807 - B3 SINE B2 -2 214 1 2 1356 258 250 36 0 chr9 101129628 101129712 -22946460 - L1M5 LINE L1 -2203 3943 3857 2 1356 438 72 0 1 chr9 101129885 101129944 -22946228 + L1_Mm LINE L1 5529 5589 -297 2 1356 8299 38 1 3 chr9 101129944 101130938 -22945234 + L1Md_F2 LINE L1 5588 6579 -3 2 1356 304 229 10 40 chr9 101130938 101130978 -22945194 + L1_Mm LINE L1 5590 5628 -258 2 1356 786 200 0 14 chr9 101131791 101131933 -22944239 - B1_Mur2 SINE Alu 0 149 10 2 1356 598 209 12 149 chr9 101131947 101132019 -22944153 + Lx9 LINE L1 7258 7330 -314 2 1356 611 176 295 6 chr9 101132019 101132185 -22943987 + B3 SINE B2 1 214 -2 2 1356 598 209 12 149 chr9 101132185 101132354 -22943818 + Lx9 LINE L1 7331 7466 -178 2 1356 216 200 0 0 chr9 101132358 101132403 -22943769 + CT-rich Low_complexity Low_complexity 3 47 0 2 1356 891 212 20 36 chr9 101132789 101132985 -22943187 + B3 SINE B2 2 194 -22 2 1356 278 273 0 72 chr9 101133052 101133135 -22943037 + ID4_ SINE ID 4 80 -3 2 1356 1097 70 42 0 chr9 101133767 101133909 -22942263 + B1_Mus1 SINE Alu 1 148 0 2 1356 183 114 0 0 chr9 101133924 101133959 -22942213 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1356 609 26 0 13 chr9 101134012 101134089 -22942083 - B2_Mm2 SINE B2 -91 104 29 2 1356 226 65 0 0 chr9 101134089 101134120 -22942052 + Lx2 LINE L1 5872 5902 -1095 2 1356 1659 71 18 0 chr9 101134120 101134345 -22941827 + L1_Mus1 LINE L1 6339 6567 0 2 1356 380 302 109 26 chr9 101134467 101134732 -22941440 + RMER15 LTR ERVL 272 558 -17 2 1356 180 0 0 0 chr9 101135171 101135191 -22940981 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2 1356 304 325 0 24 chr9 101135250 101135335 -22940837 - RSINE1 SINE B4 -19 146 64 2 1356 359 215 53 21 chr9 101135416 101135511 -22940661 - PB1D10 SINE Alu 0 117 20 2 1356 721 317 24 12 chr9 101135584 101135833 -22940339 - L2 LINE L2 -552 2867 2616 2 1356 790 290 41 20 chr9 101135880 101136077 -22940095 + B3 SINE B2 1 201 -15 2 1356 397 217 0 57 chr9 101136289 101136391 -22939781 + B1_Mur1 SINE Alu 38 129 -20 2 1356 245 274 54 14 chr9 101136446 101136520 -22939652 + LTR40b LTR ERVL 338 414 -48 2 1356 529 354 236 25 chr9 101136594 101137428 -22938744 - L2 LINE L2 -1285 2134 1125 2 1356 1085 321 63 34 chr9 101137435 101137989 -22938183 + L2 LINE L2 341 910 -2509 2 1356 545 196 44 61 chr9 101138062 101138176 -22937996 - PB1D9 SINE Alu -8 112 1 2 1356 621 256 131 0 chr9 101138199 101138359 -22937813 + B3A SINE B2 1 181 -17 2 1356 287 316 71 0 chr9 101138521 101138619 -22937553 + PB1D10 SINE Alu 1 105 -12 2 1356 1783 219 41 8 chr9 101138942 101139306 -22936866 + MTEa LTR MaLR 1 376 -3 2 1356 21 0 0 0 chr9 101139457 101139478 -22936694 + AT_rich Low_complexity Low_complexity 1 21 0 2 1356 596 292 96 3 chr9 101139578 101139952 -22936220 + L1M3 LINE L1 3510 3918 -2222 2 1356 1392 198 84 3 chr9 101140429 101140774 -22935398 - ORR1D1 LTR MaLR 0 374 2 2 1356 209 33 0 32 chr9 101140924 101140955 -22935217 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2 1356 528 183 36 55 chr9 101140955 101141065 -22935107 - PB1D9 SINE Alu -12 108 1 2 1356 235 122 41 0 chr9 101141080 101141129 -22935043 + GA-rich Low_complexity Low_complexity 2 52 0 2 1356 322 285 134 35 chr9 101141150 101141292 -22934880 - B3A SINE B2 0 198 43 2 1356 504 117 0 0 chr9 101141536 101141613 -22934559 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1356 201 154 0 0 chr9 101141742 101141781 -22934391 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1356 22 35 0 0 chr9 101142118 101142147 -22934025 + AT_rich Low_complexity Low_complexity 1 29 0 2 1356 200 366 24 0 chr9 101142701 101142783 -22933389 + L2a LINE L2 3343 3426 0 2 1356 1022 225 18 22 chr9 101143147 101143370 -22932802 + ID_B1 SINE B4 3 224 0 2 1356 1160 43 14 0 chr9 101144100 101144240 -22931932 + B1_Mm SINE Alu 3 144 -3 2 1356 180 0 0 0 chr9 101144240 101144260 -22931912 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1356 496 225 35 0 chr9 101144548 101144662 -22931510 - PB1D7 SINE Alu 0 149 24 2 1356 228 296 28 0 chr9 101144728 101144799 -22931373 + MIRm SINE MIR 119 191 -85 2 1356 347 188 112 0 chr9 101144960 101145040 -22931132 + PB1D7 SINE Alu 18 106 -14 3 1356 297 0 0 0 chr9 101145131 101145164 -22931008 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1356 1204 185 9 0 chr9 101145545 101145761 -22930411 - URR1B DNA MER1_type 0 225 8 3 1356 315 355 82 57 chr9 101145784 101146029 -22930143 - L2 LINE L2 -715 2704 2454 3 1356 411 325 120 46 chr9 101146008 101146334 -22929838 - L2 LINE L2 -1178 2241 1892 3 1356 219 318 0 0 chr9 101146409 101146472 -22929700 + L2a LINE L2 3354 3416 -10 3 1356 225 287 74 128 chr9 101146727 101146875 -22929297 + MER89 LTR ERV1 98 237 -322 3 1356 650 217 82 11 chr9 101147184 101147366 -22928806 - B3A SINE B2 -3 195 1 3 1356 302 333 151 23 chr9 101147370 101147542 -22928630 - B4A SINE B4 -98 194 1 3 1356 1501 106 13 0 chr9 101148081 101148316 -22927856 + Lx2A LINE L1 6771 7008 0 3 1356 318 254 15 0 chr9 101148331 101148398 -22927774 + ID4_ SINE ID 3 70 -13 3 1356 398 133 400 0 chr9 101148539 101148629 -22927543 - B1_Mus1 SINE Alu -21 127 2 3 1356 699 217 41 20 chr9 101148805 101148951 -22927221 - B3 SINE B2 -1 215 67 3 1356 364 226 34 17 chr9 101149259 101149376 -22926796 + B1F1 SINE Alu 31 149 0 3 1356 201 122 39 39 chr9 101149426 101149477 -22926695 + A-rich Low_complexity Low_complexity 4 54 0 3 1356 209 216 39 0 chr9 101149573 101149624 -22926548 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1356 632 250 118 11 chr9 101149659 101149837 -22926335 - B4A SINE B4 -80 212 16 3 1356 252 247 12 72 chr9 101150153 101150236 -22925936 + RSINE1 SINE B4 88 165 0 3 1356 281 345 42 33 chr9 101150370 101150490 -22925682 - MER102b DNA MER1_type -220 121 1 3 1356 205 325 66 70 chr9 101150611 101150869 -22925303 + L2 LINE L2 2443 2699 -720 3 1356 238 215 123 25 chr9 101150970 101151051 -22925121 + L1M5 LINE L1 5683 5771 -391 3 1356 639 346 9 27 chr9 101151884 101152107 -22924065 + MER20 DNA MER1_type 1 219 0 3 1356 342 0 0 0 chr9 101152593 101152631 -22923541 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1356 28 71 0 0 chr9 101153843 101153899 -22922273 + GC_rich Low_complexity Low_complexity 1 56 0 3 1356 207 304 0 26 chr9 101154122 101154237 -22921935 + (CCCG)n Simple_repeat Simple_repeat 1 112 0 3 1356 22 0 0 0 chr9 101154558 101154580 -22921592 + AT_rich Low_complexity Low_complexity 1 22 0 3 1356 393 254 162 73 chr9 101154753 101154957 -22921215 + ID_B1 SINE B4 2 223 -1 3 1356 28 61 0 0 chr9 101155311 101155360 -22920812 + AT_rich Low_complexity Low_complexity 1 49 0 3 1356 201 244 23 93 chr9 101155473 101155559 -22920613 - MIRc SINE MIR -30 238 159 3 1356 294 301 48 63 chr9 101155733 101155764 -22920408 + PB1D10 SINE Alu 3 64 -85 3 1356 353 231 51 0 chr9 101155764 101155842 -22920330 + ID_B1 SINE B4 136 217 -7 3 1356 294 301 48 63 chr9 101155842 101155879 -22920293 + PB1D10 SINE Alu 65 143 -6 3 1356 355 290 80 5 chr9 101156227 101156428 -22919744 - L1MC5 LINE L1 -58 7903 7688 3 1356 359 203 13 51 chr9 101156638 101156716 -22919456 - ID4_ SINE ID -8 75 1 3 1356 483 309 23 6 chr9 101156804 101156980 -22919192 - B3A SINE B2 -18 180 2 3 1356 319 183 192 0 chr9 101157184 101157304 -22918868 + L1MEc LINE L1 929 1071 -5329 3 1356 310 274 48 19 chr9 101157312 101157416 -22918756 + PB1D10 SINE Alu 11 117 0 3 1356 593 286 0 0 chr9 101157421 101157561 -22918611 + B1_Mur1 SINE Alu 5 144 -5 3 1356 332 270 65 30 chr9 101157587 101157755 -22918417 + L1MEc LINE L1 1105 1278 -5122 3 1356 331 309 16 38 chr9 101157974 101158159 -22918013 + RLTR42-int LTR ERVK 1146 1326 -4196 3 1356 1142 55 0 7 chr9 101158273 101158419 -22917753 + B1_Mm SINE Alu 1 145 -2 3 1356 348 83 0 0 chr9 101158421 101158469 -22917703 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1356 189 74 0 0 chr9 101158842 101158869 -22917303 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1356 1496 272 25 72 chr9 101158998 101159480 -22916692 - L1MA6 LINE L1 -48 6252 5790 3 1356 324 0 0 0 chr9 101159480 101159516 -22916656 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1356 1496 272 25 72 chr9 101159516 101159711 -22916461 - L1MA6 LINE L1 -511 5789 5607 3 1356 1475 246 58 51 chr9 101160230 101160796 -22915376 - L1MB8 LINE L1 0 6178 5600 3 1356 556 260 48 97 chr9 101160806 101161096 -22915076 + B4 SINE B4 1 276 -16 3 1356 633 254 0 34 chr9 101161190 101161337 -22914835 + B1_Mur3 SINE Alu 1 142 -7 3 1356 507 279 12 53 chr9 101161373 101161543 -22914629 - RSINE1 SINE B4 0 165 3 3 1356 503 308 111 47 chr9 101162344 101162623 -22913549 - Tigger13a DNA MER2_type -45 726 430 3 1356 257 301 0 27 chr9 101162709 101162784 -22913388 - ID4 SINE ID -6 77 5 3 1356 399 298 45 14 chr9 101162821 101163042 -22913130 - L1MA6 LINE L1 -22 6278 6051 3 1356 720 314 63 48 chr9 101163060 101163411 -22912761 - Tigger13a DNA MER2_type -399 372 17 3 1356 1185 68 0 0 chr9 101163429 101163576 -22912596 - B1_Mm SINE Alu 0 147 1 3 1356 485 214 141 30 chr9 101163611 101163746 -22912426 + B3 SINE B2 1 150 -66 3 1356 592 290 18 12 chr9 101164909 101165073 -22911099 + ID_B1 SINE B4 56 220 -4 3 1356 248 322 148 91 chr9 101165305 101165602 -22910570 + LTR78 LTR ERV1 864 1177 -127 3 1356 512 285 96 28 chr9 101165593 101165770 -22910402 + ID_B1 SINE B4 33 221 -3 3 1356 24 24 0 24 chr9 101165814 101165834 -22910338 + AT_rich Low_complexity Low_complexity 1 20 0 3 1356 4472 58 0 3 chr9 101165834 101166405 -22909767 + L1Md_F2 LINE L1 6013 6581 -1 3 1356 24 24 0 24 chr9 101166405 101166426 -22909746 + AT_rich Low_complexity Low_complexity 1 21 0 3 1356 404 253 82 88 chr9 101166432 101166450 -22909722 - B2_Mm2 SINE B2 -14 181 160 3 1356 186 71 0 0 chr9 101166450 101166478 -22909694 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1356 687 253 82 88 chr9 101166478 101166641 -22909531 - B3A SINE B2 -30 168 1 3 1356 294 251 296 117 chr9 101166643 101166883 -22909289 - L1M2 LINE L1 -1333 4810 4528 3 1356 270 0 0 0 chr9 101168926 101168956 -22907216 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1356 1049 175 72 0 chr9 101168966 101169160 -22907012 - B3 SINE B2 -7 209 2 3 1356 231 167 0 0 chr9 101169343 101169385 -22906787 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1356 204 67 0 0 chr9 101170037 101170067 -22906105 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1356 1956 204 115 111 chr9 101170172 101170901 -22905271 + RMER19A LTR ERVK 1 732 -5 3 1356 432 268 27 0 chr9 101170904 101171016 -22905156 - B1F SINE Alu -25 124 10 3 1356 336 224 127 27 chr9 101171188 101171298 -22904874 + MTD LTR MaLR 2 122 -297 3 1356 584 269 57 92 chr9 101171290 101171519 -22904653 - B4A SINE B4 -71 221 1 3 1356 365 281 33 58 chr9 101171642 101171763 -22904409 - B1F SINE Alu -1 148 31 3 1356 454 303 82 0 chr9 101172820 101172942 -22903230 - RSINE1 SINE B4 -31 134 3 3 1356 238 270 105 73 chr9 101173088 101173212 -22902960 - ORR1E LTR MaLR -167 192 65 3 1356 1572 211 93 9 chr9 101173212 101173557 -22902615 - ORR1D1 LTR MaLR 0 374 1 3 1356 308 376 21 7 chr9 101174243 101174385 -22901787 - ID_B1 SINE B4 0 224 81 3 1356 770 246 5 41 chr9 101174406 101174601 -22901571 - B3A SINE B2 -6 192 5 3 1356 777 277 181 49 chr9 101175618 101176088 -22900084 + MLT1E1 LTR MaLR 113 644 -10 3 1356 947 238 36 23 chr9 101176138 101176357 -22899815 - ID_B1 SINE B4 0 224 3 3 1356 818 248 68 53 chr9 101176397 101176661 -22899511 + B4A SINE B4 2 269 -23 3 1356 666 25 0 0 chr9 101176661 101176741 -22899431 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 1356 467 363 62 0 chr9 101177030 101177176 -22898996 - RSINE1 SINE B4 -10 155 1 3 1356 224 174 43 0 chr9 101177698 101177744 -22898428 + MIRc SINE MIR 20 67 -201 3 1356 192 254 0 0 chr9 101177872 101177931 -22898241 + G-rich Low_complexity Low_complexity 2 60 0 3 1356 678 227 26 7 chr9 101177933 101178084 -22898088 - B3A SINE B2 -43 155 2 3 1356 287 356 136 18 chr9 101178403 101178675 -22897497 + L2 LINE L2 1500 1803 -1616 3 1356 447 347 82 18 chr9 101178697 101179026 -22897146 + L2 LINE L2 2149 2498 -921 3 1356 448 273 36 0 chr9 101179047 101179186 -22896986 - RMER15 LTR ERVL -10 565 422 3 1356 495 319 30 12 chr9 101179591 101179759 -22896413 + B3A SINE B2 1 171 -27 3 1356 4070 224 28 19 chr9 101180133 101181163 -22895009 + Lx9 LINE L1 6539 7617 -27 3 1356 297 319 97 25 chr9 101181192 101181388 -22894784 - L2 LINE L2 -552 2867 2658 3 1356 279 0 0 0 chr9 101181425 101181456 -22894716 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1356 450 0 0 0 chr9 101181580 101181630 -22894542 + (CTA)n Simple_repeat Simple_repeat 1 50 0 3 1356 658 225 0 86 chr9 101181634 101181809 -22894363 - RSINE1 SINE B4 -3 162 3 3 1356 517 290 124 14 chr9 101181809 101182015 -22894157 - B4A SINE B4 -62 230 2 3 1356 442 340 75 6 chr9 101184207 101184367 -22891805 + MER96 DNA hAT 4 174 -1 3 1356 30 27 0 0 chr9 101185321 101185358 -22890814 + AT_rich Low_complexity Low_complexity 1 37 0 3 1356 801 206 81 15 chr9 101185493 101185690 -22890482 + B3 SINE B2 1 210 -6 3 1356 683 295 82 22 chr9 101186009 101186276 -22889896 - B4 SINE B4 -4 288 6 3 1356 344 247 0 0 chr9 101186323 101186404 -22889768 - ID_B1 SINE B4 -9 215 135 3 1356 459 278 59 95 chr9 101186492 101186798 -22889374 - MLT1L LTR MaLR -2 608 314 3 1356 235 302 10 30 chr9 101186988 101187087 -22889085 - MLT1L LTR MaLR -508 102 6 3 1356 1251 246 94 14 chr9 101187184 101187535 -22888637 - MTE2b LTR MaLR 0 379 1 3 1357 1157 164 24 113 chr9 101188524 101188771 -22887401 + URR1B DNA MER1_type 1 225 0 3 1357 291 85 0 0 chr9 101190651 101190698 -22885474 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 1357 1197 48 0 0 chr9 101190711 101190857 -22885315 - B1_Mm SINE Alu -1 146 1 4 1357 213 39 0 0 chr9 101191038 101191064 -22885108 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1357 273 216 26 26 chr9 101192656 101192732 -22883440 + L3 LINE CR1 2643 2718 -1771 4 1357 324 64 0 0 chr9 101192732 101192779 -22883393 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1357 194 91 0 29 chr9 101193103 101193137 -22883035 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 4 1357 535 256 23 0 chr9 101193166 101193295 -22882877 - RSINE1 SINE B4 -9 156 25 4 1357 183 42 0 0 chr9 101193697 101193721 -22882451 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1357 195 42 0 0 chr9 101193794 101193818 -22882354 + (CAT)n Simple_repeat Simple_repeat 2 25 0 4 1357 579 330 131 31 chr9 101193874 101194356 -22881816 - L1ME4a LINE L1 -12 6112 5583 4 1357 791 248 55 17 chr9 101194650 101194914 -22881258 - ORR1E LTR MaLR -13 366 50 4 1357 2865 39 0 3 chr9 101194940 101195278 -22880894 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1357 10236 25 2 4 chr9 101195278 101196438 -22879734 - IAPEz-int LTR ERVK 0 6481 5325 4 1357 33779 26 14 10 chr9 101196438 101200329 -22875843 - IAPEz-int LTR ERVK -2566 3915 8 4 1357 2865 39 0 3 chr9 101200329 101200667 -22875505 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1357 297 0 0 0 chr9 101200723 101200756 -22875416 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1357 208 363 72 8 chr9 101200756 101200992 -22875180 + L2c LINE L2 3100 3350 -37 4 1357 337 292 108 65 chr9 101201056 101201195 -22874977 - RSINE1 SINE B4 -8 157 13 4 1357 25 0 0 0 chr9 101201208 101201233 -22874939 + AT_rich Low_complexity Low_complexity 1 25 0 4 1357 192 391 0 0 chr9 101201786 101201855 -22874317 + L2b LINE L2 3294 3362 -13 4 1357 305 302 35 0 chr9 101202561 101202647 -22873525 + B1F SINE Alu 48 136 -13 4 1357 1092 95 0 29 chr9 101202659 101202833 -22873339 - L1Md_F2 LINE L1 0 6582 6414 4 1357 317 231 0 0 chr9 101202859 101202924 -22873248 + ID4_ SINE ID 1 65 -18 4 1357 303 226 64 11 chr9 101202963 101203057 -22873115 + MIR SINE MIR 42 140 -122 4 1357 672 169 113 0 chr9 101203212 101203336 -22872836 + B1_Mus2 SINE Alu 1 138 -9 4 1357 261 0 0 0 chr9 101203336 101203365 -22872807 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1357 441 344 102 12 chr9 101203441 101203685 -22872487 - MT2A LTR ERVL 0 533 268 4 1357 353 305 132 31 chr9 101204853 101205034 -22871138 + L1MEd LINE L1 912 1127 -5009 4 1357 732 89 8 16 chr9 101205034 101205159 -22871013 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 4 1357 353 305 132 31 chr9 101205159 101205295 -22870877 + L1MEd LINE L1 1128 1261 -4875 4 1357 387 0 0 0 chr9 101205535 101205578 -22870594 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4 1357 468 321 83 12 chr9 101205580 101205832 -22870340 + L1MB3 LINE L1 5906 6175 -8 4 1357 247 85 21 21 chr9 101205976 101206024 -22870148 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1357 5802 194 69 46 chr9 101206193 101207493 -22868679 + Lx9 LINE L1 6308 7637 -7 4 1357 300 262 122 14 chr9 101207542 101207689 -22868483 + L1MEd LINE L1 2349 2511 -3635 4 1357 269 326 56 21 chr9 101209024 101209168 -22867004 - MER5A DNA MER1_type -33 156 8 4 1357 31 26 0 0 chr9 101209509 101209547 -22866625 + AT_rich Low_complexity Low_complexity 1 38 0 4 1357 342 181 64 37 chr9 101209913 101210011 -22866161 - MER3 DNA MER1_type -27 182 82 4 1357 640 85 11 0 chr9 101210011 101210096 -22866076 + MTC LTR MaLR 3 88 -333 4 1357 757 164 0 0 chr9 101210096 101210224 -22865948 + B3 SINE B2 2 129 -87 4 1357 602 151 65 40 chr9 101210291 101210415 -22865757 + B1_Mus1 SINE Alu 15 141 -7 4 1357 1731 137 74 3 chr9 101210439 101210557 -22865615 + MTC LTR MaLR 76 195 -226 4 1357 324 0 0 0 chr9 101210557 101210593 -22865579 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 4 1357 1731 137 74 3 chr9 101210593 101210797 -22865375 + MTC LTR MaLR 196 420 -1 4 1357 5474 165 89 17 chr9 101210798 101211814 -22864358 + MTC-int LTR MaLR 2 1077 -181 4 1357 961 106 28 7 chr9 101211814 101211957 -22864215 - B1_Mus1 SINE Alu 0 148 3 4 1357 5474 165 89 17 chr9 101211957 101212113 -22864059 + MTC-int LTR MaLR 1078 1257 -1 4 1357 2321 167 0 28 chr9 101212115 101212173 -22863999 + MTC LTR MaLR 3 57 -364 4 1357 3423 38 2 0 chr9 101212173 101212568 -22863604 - MTA_Mm LTR MaLR 0 396 1 4 1357 9741 21 0 0 chr9 101212568 101213666 -22862506 - MTA_Mm-int LTR MaLR 0 1098 1 4 1357 3423 38 2 0 chr9 101213666 101214061 -22862111 - MTA_Mm LTR MaLR 0 396 1 4 1357 2321 167 0 28 chr9 101214061 101214431 -22861741 + MTC LTR MaLR 58 419 -2 4 1357 379 218 46 0 chr9 101214544 101214631 -22861541 - PB1D10 SINE Alu -1 116 26 4 1357 899 154 6 0 chr9 101215063 101215232 -22860940 + CT-rich Low_complexity Low_complexity 1 170 0 4 1357 7734 90 17 14 chr9 101215232 101216338 -22859834 - Lx LINE L1 0 6654 5546 4 1357 756 132 11 11 chr9 101216333 101216465 -22859707 + L1_Mm LINE L1 5438 5603 -575 4 1357 621 252 15 30 chr9 101218282 101218417 -22857755 + B1_Mur1 SINE Alu 12 144 -5 4 1357 366 276 28 9 chr9 101218461 101218567 -22857605 - B4A SINE B4 -182 110 3 4 1357 282 247 0 13 chr9 101218584 101218662 -22857510 - L1M4 LINE L1 -857 5289 5213 4 1357 1116 88 0 0 chr9 101218701 101218849 -22857323 - B1_Mus1 SINE Alu 0 148 1 4 1357 380 298 44 44 chr9 101218856 101218913 -22857259 - B1F2 SINE Alu -7 142 86 4 1357 3465 28 2 0 chr9 101218913 101219308 -22856864 + MTA_Mm LTR MaLR 1 396 0 4 1357 380 298 44 44 chr9 101219308 101219387 -22856785 - B1F2 SINE Alu -64 85 6 4 1357 727 126 0 16 chr9 101219408 101219537 -22856635 + (TCC)n Simple_repeat Simple_repeat 3 129 0 4 1357 401 341 57 21 chr9 101219588 101219729 -22856443 + RSINE1 SINE B4 1 146 -19 4 1357 270 106 0 0 chr9 101219733 101219780 -22856392 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1357 243 0 0 0 chr9 101219803 101219830 -22856342 + (CTAA)n Simple_repeat Simple_repeat 2 28 0 4 1357 317 247 13 0 chr9 101219845 101219922 -22856250 - L1M4 LINE L1 -997 5149 5072 4 1357 673 204 183 27 chr9 101219937 101220123 -22856049 - B3 SINE B2 0 216 2 4 1357 891 227 71 0 chr9 101220145 101220343 -22855829 - B3 SINE B2 0 216 5 4 1357 236 30 30 0 chr9 101220631 101220664 -22855508 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1357 706 321 17 30 chr9 101221134 101221295 -22854877 - B4A SINE B4 -63 229 71 4 1357 2044 119 52 52 chr9 101221295 101221641 -22854531 - ORR1A1 LTR MaLR 0 346 1 4 1357 706 321 17 30 chr9 101221641 101221710 -22854462 - B4A SINE B4 -222 70 2 4 1357 330 147 0 0 chr9 101222051 101222119 -22854053 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1357 205 86 29 0 chr9 101222237 101222272 -22853900 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 4 1357 491 186 7 28 chr9 101222489 101222633 -22853539 + CT-rich Low_complexity Low_complexity 5 145 0 4 1357 1269 106 0 4 chr9 101222712 101222985 -22853187 + (CATA)n Simple_repeat Simple_repeat 1 272 0 4 1357 339 311 106 46 chr9 101222985 101223400 -22852772 - L1MC4 LINE L1 -130 7912 7473 4 1357 420 176 46 0 chr9 101224028 101224159 -22852013 + (TATATG)n Simple_repeat Simple_repeat 4 140 0 4 1357 247 215 30 15 chr9 101224170 101224236 -22851936 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1357 210 235 20 0 chr9 101225483 101225534 -22850638 - ID4 SINE ID -30 53 2 4 1357 23 33 0 0 chr9 101225597 101225627 -22850545 + AT_rich Low_complexity Low_complexity 1 30 0 4 1357 444 287 22 7 chr9 101226091 101226228 -22849944 + MER3 DNA MER1_type 15 153 -56 4 1357 1600 199 181 3 chr9 101226887 101227279 -22848893 + Lx6 LINE L1 6973 7434 -26 4 1357 5115 62 32 0 chr9 101227387 101228045 -22848127 + L1Md_F2 LINE L1 4907 5585 -298 4 1357 7590 50 56 2 chr9 101228046 101228980 -22847192 + L1Md_F2 LINE L1 5587 6570 -12 4 1357 701 237 58 0 chr9 101229005 101229161 -22847011 + B3A SINE B2 2 166 -32 4 1357 758 109 0 8 chr9 101230567 101230687 -22845485 + (TCCC)n Simple_repeat Simple_repeat 4 122 0 4 1357 1029 231 14 130 chr9 101231077 101231218 -22844954 - Lx7 LINE L1 -373 5927 5764 4 1357 608 239 161 0 chr9 101231218 101231373 -22844799 - B3A SINE B2 -18 180 1 4 1357 1054 218 7 32 chr9 101231373 101231633 -22844539 - Lx7 LINE L1 -509 5824 5536 4 1357 21 0 0 0 chr9 101232352 101232373 -22843799 + AT_rich Low_complexity Low_complexity 1 21 0 4 1357 817 264 129 40 chr9 101233217 101233653 -22842519 - L1MC1 LINE L1 -1 6343 5861 4 1357 195 162 0 0 chr9 101233658 101233695 -22842477 + CT-rich Low_complexity Low_complexity 1 37 0 4 1357 611 315 61 23 chr9 101233737 101233897 -22842275 - B4A SINE B4 -18 274 100 4 1357 2356 60 27 59 chr9 101233897 101234235 -22841937 + ORR1A2 LTR MaLR 1 327 0 4 1357 611 315 61 23 chr9 101234235 101234337 -22841835 - B4A SINE B4 -193 99 2 4 1357 675 199 55 15 chr9 101234677 101234876 -22841296 - L1M3 LINE L1 -1676 4464 4258 4 1357 658 216 94 71 chr9 101234948 101235249 -22840923 - L1M3 LINE L1 -1834 4309 4000 4 1357 656 120 9 0 chr9 101235263 101235371 -22840801 - B1_Mur4 SINE Alu 0 150 42 4 1357 683 232 203 30 chr9 101235394 101235665 -22840507 - L1M3 LINE L1 -2145 3995 3678 4 1357 2009 297 79 56 chr9 101235968 101237378 -22838794 - L1MA5 LINE L1 -374 5926 4441 4 1357 5718 44 9 1 chr9 101237832 101238517 -22837655 - L1Md_F2 LINE L1 -7 6575 5886 4 1357 2078 217 116 122 chr9 101238673 101238970 -22837202 - L1M3 LINE L1 -2752 3388 3093 4 1357 291 93 0 0 chr9 101238970 101239013 -22837159 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1357 2078 217 116 122 chr9 101239013 101239930 -22836242 - L1M3 LINE L1 -3048 3092 2181 4 1357 339 25 0 0 chr9 101240363 101240403 -22835769 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1357 269 172 0 15 chr9 101240406 101240471 -22835701 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 1357 1041 181 62 0 chr9 101240471 101240664 -22835508 - B3 SINE B2 -2 214 10 4 1357 325 235 0 0 chr9 101241855 101241923 -22834249 - B3 SINE B2 -93 123 56 4 1357 23 0 0 0 chr9 101242223 101242246 -22833926 + AT_rich Low_complexity Low_complexity 1 23 0 4 1357 213 39 0 0 chr9 101242613 101242639 -22833533 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1357 228 322 0 0 chr9 101242642 101242701 -22833471 - RSINE1 SINE B4 -13 152 94 4 1357 243 268 0 145 chr9 101242696 101242779 -22833393 - B1F2 SINE Alu -78 71 1 4 1357 585 266 7 7 chr9 101242779 101242865 -22833307 - B4A SINE B4 -206 86 1 4 1357 198 0 0 0 chr9 101242883 101242905 -22833267 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 1357 25 31 0 0 chr9 101243842 101243874 -22832298 + AT_rich Low_complexity Low_complexity 1 32 0 4 1357 462 308 97 0 chr9 101244795 101244980 -22831192 + MER89 LTR ERV1 350 552 -7 4 1357 224 361 35 40 chr9 101244980 101245153 -22831019 - L2b LINE L2 -260 3115 2944 4 1357 751 299 51 102 chr9 101245886 101246269 -22829903 + Charlie1b DNA MER1_type 2 356 -167 4 1357 999 252 101 0 chr9 101246269 101246527 -22829645 - B4A SINE B4 -8 284 1 4 1357 751 299 51 102 chr9 101246527 101246690 -22829482 + Charlie1b DNA MER1_type 357 520 -3 4 1357 735 44 0 0 chr9 101246965 101247056 -22829116 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 1357 267 54 0 0 chr9 101247971 101248008 -22828164 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1357 1142 252 164 15 chr9 101248008 101248472 -22827700 + L1MA5 LINE L1 5476 6008 -292 5 1357 304 288 45 89 chr9 101248623 101248802 -22827370 + MER5B DNA MER1_type 8 178 0 5 1357 253 343 33 67 chr9 101248797 101248947 -22827225 - MER5A DNA MER1_type 0 189 45 5 1357 1549 276 54 22 chr9 101249193 101249741 -22826431 + Lx9 LINE L1 6779 7333 -311 5 1357 414 0 0 0 chr9 101249741 101249787 -22826385 + (CTAA)n Simple_repeat Simple_repeat 2 47 0 5 1357 2563 124 47 5 chr9 101249793 101250197 -22825975 + MTC LTR MaLR 1 421 0 5 1357 1163 321 101 31 chr9 101250197 101250322 -22825850 + Lx9 LINE L1 7328 7467 -6 5 1357 303 212 136 0 chr9 101250369 101250435 -22825737 + ID4_ SINE ID 9 83 0 5 1357 198 257 127 14 chr9 101251234 101251305 -22824867 - L2c LINE L2 -43 3344 3266 5 1357 1314 140 159 53 chr9 101251959 101252282 -22823890 + ORR1B1 LTR MaLR 1 320 -9 5 1357 574 293 81 4 chr9 101252701 101252948 -22823224 + L1M5 LINE L1 4075 4340 -1806 5 1357 679 246 121 13 chr9 101253072 101253303 -22822869 + Lx8 LINE L1 7211 7466 -7 5 1357 432 0 0 0 chr9 101253755 101253803 -22822369 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1357 549 0 0 0 chr9 101253834 101253895 -22822277 + (CAAAC)n Simple_repeat Simple_repeat 1 61 0 5 1357 234 312 83 0 chr9 101254645 101254754 -22821418 + L1ME5 LINE L1 6074 6191 -3 5 1357 712 186 7 27 chr9 101255166 101255315 -22820857 + RMER1C Other Other 1080 1225 -117 5 1357 1137 83 0 0 chr9 101255323 101255468 -22820704 - B1_Mus2 SINE Alu 0 147 3 5 1357 1043 119 0 6 chr9 101255468 101255645 -22820527 + (TCC)n Simple_repeat Simple_repeat 3 178 0 5 1357 344 148 49 0 chr9 101255661 101255722 -22820450 + RMER1C Other Other 1279 1342 0 5 1357 435 169 0 0 chr9 101256283 101256407 -22819765 + (TG)n Simple_repeat Simple_repeat 2 125 0 5 1357 724 243 2 7 chr9 101257308 101257484 -22818688 + B3 SINE B2 41 210 -6 5 1357 709 241 173 8 chr9 101257706 101257949 -22818223 - B4 SINE B4 -8 284 2 5 1357 463 256 32 24 chr9 101259475 101259599 -22816573 - RSINE1 SINE B4 -36 129 5 5 1357 305 244 51 13 chr9 101260922 101261001 -22815171 - ID4 SINE ID 0 83 2 5 1357 201 74 0 0 chr9 101261191 101261218 -22814954 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 5 1357 221 230 26 39 chr9 101261224 101261301 -22814871 + CT-rich Low_complexity Low_complexity 1 76 0 5 1357 260 348 0 11 chr9 101261997 101262087 -22814085 + L1MEe LINE L1 620 708 -5411 5 1357 706 286 34 51 chr9 101262483 101262778 -22813394 + B4A SINE B4 2 291 -1 5 1357 374 0 22 0 chr9 101262803 101262849 -22813323 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1357 2423 42 0 0 chr9 101262982 101263270 -22812902 - L1Md_A LINE L1 0 6582 6295 5 1357 2538 168 98 54 chr9 101263283 101263873 -22812299 + RLTR18 LTR ERVK 1 616 0 5 1357 392 325 39 20 chr9 101263892 101264120 -22812052 + L1MEe LINE L1 1304 1532 -4693 5 1357 183 321 207 21 chr9 101264182 101264322 -22811850 - MER5B DNA MER1_type -5 173 8 5 1357 294 29 0 0 chr9 101264467 101264502 -22811670 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1357 21 57 0 0 chr9 101264620 101264655 -22811517 + AT_rich Low_complexity Low_complexity 1 35 0 5 1357 342 262 9 55 chr9 101265282 101265391 -22810781 + PB1D10 SINE Alu 14 117 0 5 1357 872 85 0 15 chr9 101265665 101265797 -22810375 + (TCCC)n Simple_repeat Simple_repeat 1 130 0 5 1357 629 263 87 93 chr9 101266030 101266340 -22809832 - MLT1C LTR MaLR -140 327 20 5 1357 258 363 104 0 chr9 101266366 101266501 -22809671 + L2 LINE L2 2603 2751 -668 5 1357 1432 203 107 37 chr9 101266602 101266976 -22809196 + MTD LTR MaLR 3 402 -17 5 1357 270 116 0 0 chr9 101267626 101267669 -22808503 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1357 639 271 38 88 chr9 101267775 101268094 -22808078 - MamRep434 DNA TcMar -70 356 54 5 1357 495 148 0 0 chr9 101268322 101268410 -22807762 + (TG)n Simple_repeat Simple_repeat 2 89 0 5 1357 498 261 150 47 chr9 101268458 101268711 -22807461 - B4A SINE B4 -12 280 2 5 1357 308 364 70 25 chr9 101268780 101268938 -22807234 + MLT1G3 LTR MaLR 41 205 -386 5 1357 624 311 124 34 chr9 101269065 101269331 -22806841 + MLT1G3 LTR MaLR 259 548 -47 5 1357 2186 261 7 49 chr9 101270168 101270720 -22805452 + Lx5 LINE L1 6499 7027 -23 5 1357 255 31 0 0 chr9 101270720 101270752 -22805420 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 5 1357 203 214 0 67 chr9 101271607 101271667 -22804505 + CT-rich Low_complexity Low_complexity 2 57 0 5 1357 357 231 13 0 chr9 101272586 101272664 -22803508 + MTD LTR MaLR 1 79 -342 5 1357 506 243 76 0 chr9 101272656 101272800 -22803372 + MTD LTR MaLR 250 404 -15 5 1357 792 32 0 0 chr9 101272800 101272895 -22803277 + (CCAA)n Simple_repeat Simple_repeat 2 96 0 5 1357 28 0 0 0 chr9 101274516 101274544 -22801628 + AT_rich Low_complexity Low_complexity 1 28 0 5 1357 2180 273 91 35 chr9 101275599 101276359 -22799813 + Lx8 LINE L1 6407 7208 -265 5 1357 937 291 31 12 chr9 101276464 101276787 -22799385 - Lx8 LINE L1 -541 5339 5011 5 1357 5228 278 54 22 chr9 101276789 101278665 -22797507 + Lx8 LINE L1 5356 7335 -138 5 1357 183 42 0 0 chr9 101278664 101278688 -22797484 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 1357 5228 282 69 23 chr9 101278688 101278797 -22797375 + Lx8 LINE L1 7335 7473 0 5 1357 278 50 25 0 chr9 101278889 101278929 -22797243 + (CTAA)n Simple_repeat Simple_repeat 2 42 0 5 1357 313 338 30 33 chr9 101279454 101279754 -22796418 - L1M5 LINE L1 -1548 4598 4300 5 1357 510 307 81 24 chr9 101280222 101280469 -22795703 + LTR40b LTR ERVL 181 441 -21 5 1357 927 334 27 61 chr9 101280489 101281079 -22795093 + HERVL40-int LTR ERVL 1 570 -4960 5 1357 999 329 10 53 chr9 101281126 101281288 -22794884 + HERVL40-int LTR ERVL 694 842 -4688 5 1357 996 264 9 0 chr9 101281288 101281508 -22794664 - MER58A DNA MER1_type 0 224 3 5 1357 999 329 10 53 chr9 101281508 101281756 -22794416 + HERVL40-int LTR ERVL 843 1086 -4444 5 1357 769 287 57 102 chr9 101282190 101282275 -22793897 + MLT1B LTR MaLR 16 108 -282 5 1357 387 304 0 18 chr9 101282275 101282389 -22793783 + PB1D10 SINE Alu 1 112 -5 5 1357 769 287 57 102 chr9 101282389 101282687 -22793485 + MLT1B LTR MaLR 109 382 -8 5 1357 274 274 110 8 chr9 101283262 101283380 -22792792 + MER68-int LTR ERVL 2778 2907 -83 5 1357 744 313 124 26 chr9 101283567 101284033 -22792139 + LTR40a LTR ERVL 7 518 -1 5 1357 875 197 155 17 chr9 101284226 101284458 -22791714 - Lx5 LINE L1 0 7050 6787 5 1357 935 160 13 0 chr9 101284455 101284611 -22791561 - Lx4B LINE L1 -413 6645 6488 5 1357 459 132 12 0 chr9 101284628 101284711 -22791461 + L1_Mur2 LINE L1 5202 5285 -592 5 1357 1582 271 118 76 chr9 101286008 101286736 -22789436 - L1_Rod LINE L1 0 5847 5072 5 1357 1004 197 20 10 chr9 101286736 101286931 -22789241 - B3 SINE B2 -17 199 3 5 1357 1582 271 118 76 chr9 101286931 101287449 -22788723 - L1_Rod LINE L1 -776 5071 4549 5 1357 35123 71 5 5 chr9 101287422 101289593 -22786579 - L1Md_F2 LINE L1 -1 6581 4406 5 1357 3430 43 0 0 chr9 101289593 101289989 -22786183 - MTA_Mm LTR MaLR 0 396 1 5 1357 35123 71 5 2 chr9 101289989 101293833 -22782339 - L1Md_F2 LINE L1 -1478 4405 561 5 1357 2816 212 84 182 chr9 101293947 101295116 -22781056 - RMER1B Other Other -9 1057 4 5 1357 607 298 8 20 chr9 101295466 101295719 -22780453 - L1M2 LINE L1 -1653 5192 4943 5 1357 810 267 82 18 chr9 101295737 101296019 -22780153 - Lx8 LINE L1 -11 7462 7163 5 1357 1783 277 100 54 chr9 101296031 101297157 -22779015 - L1M2 LINE L1 -1895 4947 3725 5 1357 532 299 57 31 chr9 101297157 101297316 -22778856 - RSINE1 SINE B4 -1 164 2 5 1357 1783 273 99 53 chr9 101297316 101297413 -22778759 - L1M2 LINE L1 -3105 3740 3638 5 1357 999 168 0 0 chr9 101297413 101297562 -22778610 - B1_Mur4 SINE Alu -1 149 1 5 1357 1783 277 100 54 chr9 101297562 101297618 -22778554 - L1M2 LINE L1 -3208 3637 3574 5 1357 2614 292 62 25 chr9 101297618 101298538 -22777634 + Lx8 LINE L1 6520 7473 0 5 1357 23 33 0 0 chr9 101298538 101298568 -22777604 + AT_rich Low_complexity Low_complexity 1 30 0 5 1357 581 335 89 29 chr9 101298569 101299162 -22777010 - L1M2 LINE L1 -3261 3584 2956 5 1357 261 281 0 0 chr9 101299172 101299236 -22776936 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1357 645 276 15 95 chr9 101299239 101299439 -22776733 - B4A SINE B4 0 292 109 5 1357 245 242 59 0 chr9 101299467 101299595 -22776577 + L1_Mur1 LINE L1 1694 1830 -4050 5 1357 382 311 10 0 chr9 101299601 101299704 -22776468 - B4A SINE B4 -188 104 1 5 1357 618 310 81 37 chr9 101299718 101300711 -22775461 - L1M2 LINE L1 -3609 2940 1905 5 1357 776 319 75 65 chr9 101301835 101302251 -22773921 + MLT1L LTR MaLR 52 471 -139 5 1357 245 248 96 67 chr9 101302778 101302882 -22773290 - Tigger16a DNA Tigger -53 880 774 5 1357 347 323 64 8 chr9 101303006 101303131 -22773041 - MIRc SINE MIR -135 133 2 5 1357 650 234 6 0 chr9 101303258 101303433 -22772739 + GA-rich Low_complexity Low_complexity 3 178 0 5 1357 181 276 124 47 chr9 101305435 101305564 -22770608 + L2c LINE L2 1863 2001 -1418 5 1357 192 200 0 0 chr9 101305688 101305733 -22770439 + (TATG)n Simple_repeat Simple_repeat 4 48 0 5 1357 23 0 0 0 chr9 101305846 101305869 -22770303 + AT_rich Low_complexity Low_complexity 1 23 0 5 1357 302 327 115 0 chr9 101305897 101306001 -22770171 - B4A SINE B4 -75 217 102 5 1357 353 179 38 25 chr9 101306079 101306159 -22770013 - B4 SINE B4 -210 82 2 5 1357 323 105 0 17 chr9 101306213 101306271 -22769901 + (TCC)n Simple_repeat Simple_repeat 2 58 0 5 1357 327 318 43 56 chr9 101306576 101306809 -22769363 + L2c LINE L2 3117 3346 -41 5 1357 212 227 0 0 chr9 101307660 101307704 -22768468 + G-rich Low_complexity Low_complexity 1 44 0 5 1357 198 305 159 8 chr9 101308647 101308779 -22767393 + MIRc SINE MIR 26 177 -91 5 1357 355 184 0 22 chr9 101310529 101310618 -22765554 + CT-rich Low_complexity Low_complexity 1 87 0 5 1357 30 0 0 0 chr9 101310752 101310782 -22765390 + AT_rich Low_complexity Low_complexity 1 30 0 5 1357 209 189 0 0 chr9 101310812 101310849 -22765323 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 5 1357 453 36 0 0 chr9 101311295 101311350 -22764822 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 5 1357 324 174 0 28 chr9 101312034 101312105 -22764067 - Lx7 LINE L1 -16 7680 7612 5 1357 190 0 67 0 chr9 101312135 101312165 -22764007 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 5 1357 1236 78 0 0 chr9 101312211 101312709 -22763463 + (CA)n Simple_repeat Simple_repeat 1 498 0 5 1357 222 37 0 0 chr9 101312787 101312814 -22763358 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 5 1357 770 175 6 17 chr9 101314595 101314775 -22761397 + CT-rich Low_complexity Low_complexity 2 179 0 5 1357 522 0 0 0 chr9 101316258 101316316 -22759856 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1357 26 64 0 0 chr9 101316805 101316852 -22759320 + AT_rich Low_complexity Low_complexity 1 47 0 5 1357 397 219 21 99 chr9 101317034 101317176 -22758996 - L1MA4 LINE L1 -368 5932 5802 5 1357 184 170 0 0 chr9 101317294 101317335 -22758837 + MIRm SINE MIR 115 155 -121 6 1357 966 266 80 3 chr9 101317948 101318261 -22757911 + Lx8 LINE L1 6622 6958 -515 6 1357 245 305 86 46 chr9 101318253 101318428 -22757744 + Lx8 LINE L1 7283 7464 -9 6 1357 397 247 124 0 chr9 101318451 101318548 -22757624 + PB1D10 SINE Alu 1 109 -8 6 1358 258 261 15 0 chr9 101318657 101318722 -22757450 + MER3 DNA MER1_type 141 206 -3 6 1358 3382 38 5 0 chr9 101319202 101319594 -22756578 + MTA_Mm LTR MaLR 1 394 -2 6 1358 33 66 0 0 chr9 101320260 101320321 -22755851 + AT_rich Low_complexity Low_complexity 1 61 0 6 1358 1934 228 42 8 chr9 101320537 101320939 -22755233 - Lx6 LINE L1 -4 7456 7041 6 1358 204 40 0 0 chr9 101321072 101321097 -22755075 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1358 636 48 0 0 chr9 101321115 101321199 -22754973 + (CCAA)n Simple_repeat Simple_repeat 4 87 0 6 1358 685 295 5 65 chr9 101321209 101321423 -22754749 - ID_B1 SINE B4 -22 202 2 6 1358 680 321 102 15 chr9 101321450 101321969 -22754203 - MLT1H1 LTR MaLR -3 566 1 6 1358 2824 295 67 24 chr9 101322207 101323301 -22752871 + Lx9 LINE L1 6319 7463 -181 6 1358 450 0 0 0 chr9 101323301 101323351 -22752821 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1358 2088 141 77 8 chr9 101323496 101323847 -22752325 + ORR1C1 LTR MaLR 4 378 0 6 1358 1044 243 98 50 chr9 101323980 101324339 -22751833 + MTEa LTR MaLR 4 379 0 6 1358 247 221 44 0 chr9 101325245 101325317 -22750855 - MIRc SINE MIR -77 191 111 6 1358 189 0 0 0 chr9 101325981 101326002 -22750170 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1358 468 0 0 0 chr9 101326833 101326885 -22749287 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1358 258 56 0 0 chr9 101327355 101327391 -22748781 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1358 320 427 24 12 chr9 101327538 101327789 -22748383 + L3 LINE CR1 3158 3411 -1078 6 1358 604 182 28 7 chr9 101328419 101328563 -22747609 + Lx4B LINE L1 6895 7041 -17 6 1358 33994 40 1 0 chr9 101329819 101336094 -22740078 + L1Md_T LINE L1 1 5589 -297 6 1358 9177 5 0 0 chr9 101336094 101337090 -22739082 + L1Md_T LINE L1 5590 6585 0 6 1358 291 214 101 10 chr9 101337293 101337392 -22738780 + MER53 DNA hAT 3 110 -83 6 1358 216 0 0 0 chr9 101337911 101337935 -22738237 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1358 225 0 0 0 chr9 101338590 101338615 -22737557 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1358 260 336 13 12 chr9 101338721 101338851 -22737321 - MIRb SINE MIR -121 147 10 6 1358 1068 98 17 0 chr9 101339227 101339400 -22736772 + (GGA)n Simple_repeat Simple_repeat 3 178 0 6 1358 249 301 37 50 chr9 101340472 101340489 -22735683 + CYRA11_Mm Unknown Y-chromosome 155 169 -448 6 1358 772 174 47 0 chr9 101340489 101340638 -22735534 - URR1B DNA MER1_type 0 225 70 6 1358 216 291 26 13 chr9 101340719 101340809 -22735363 - MIR SINE MIR -146 122 38 6 1358 459 293 91 132 chr9 101341569 101341856 -22734316 + B4 SINE B4 1 275 -17 6 1358 756 22 0 0 chr9 101341856 101341946 -22734226 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 1358 441 0 0 0 chr9 101341946 101341994 -22734178 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1358 212 252 169 37 chr9 101342076 101342212 -22733960 + L2a LINE L2 3273 3426 0 6 1358 25 51 0 0 chr9 101344806 101344845 -22731327 + AT_rich Low_complexity Low_complexity 1 39 0 6 1358 326 300 0 20 chr9 101344915 101345017 -22731155 - MIRb SINE MIR -120 148 49 6 1358 366 330 41 25 chr9 101345185 101345381 -22730791 + L3 LINE CR1 3593 3791 -698 6 1358 867 234 55 0 chr9 101345927 101346128 -22730044 - ID_B1 SINE B4 -12 212 1 6 1358 536 302 23 17 chr9 101346170 101346342 -22729830 - MER5A DNA MER1_type -1 188 16 6 1358 2174 128 67 0 chr9 101346821 101347165 -22729007 - ORR1B2 LTR MaLR 0 367 1 6 1358 608 302 76 56 chr9 101348877 101349179 -22726993 - MLT1K LTR MaLR -215 380 73 6 1358 253 203 25 74 chr9 101350449 101350530 -22725642 + MIR SINE MIR 116 199 -69 6 1358 22 94 0 0 chr9 101350568 101350632 -22725540 + AT_rich Low_complexity Low_complexity 1 64 0 6 1358 779 238 48 19 chr9 101351815 101352021 -22724151 - B3 SINE B2 -4 212 1 6 1358 211 391 35 16 chr9 101353170 101353347 -22722825 + MIR SINE MIR 65 247 -21 6 1358 397 287 19 0 chr9 101353870 101353978 -22722194 - ID_B1 SINE B4 0 224 115 6 1358 218 224 44 15 chr9 101354034 101354102 -22722070 + MIR SINE MIR 111 180 -82 6 1358 258 260 104 31 chr9 101355270 101355431 -22720741 - ORR1D2 LTR MaLR -182 177 5 6 1358 495 0 0 0 chr9 101356463 101356518 -22719654 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1358 662 279 67 71 chr9 101357216 101357586 -22718586 - MLT2B1 LTR ERVL -38 529 64 6 1358 339 25 0 0 chr9 101358502 101358542 -22717630 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1358 189 0 0 0 chr9 101359687 101359708 -22716464 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 6 1358 205 239 0 0 chr9 101359728 101359774 -22716398 + L2b LINE L2 3330 3375 0 6 1358 183 122 20 39 chr9 101360170 101360221 -22715951 + CT-rich Low_complexity Low_complexity 4 53 0 6 1358 425 290 239 5 chr9 101360281 101360503 -22715669 - B4 SINE B4 -18 274 1 6 1358 225 270 13 39 chr9 101361800 101361877 -22714295 - L3 LINE CR1 -859 3630 3556 6 1358 712 236 0 0 chr9 101362468 101362608 -22713564 - ID_B1 SINE B4 -6 218 79 6 1358 542 239 65 29 chr9 101362622 101362760 -22713412 - B1F2 SINE Alu 0 149 7 6 1358 260 307 39 97 chr9 101362760 101362774 -22713398 - ID_B1 SINE B4 0 221 79 6 1358 396 103 0 0 chr9 101362867 101362925 -22713247 + (TCC)n Simple_repeat Simple_repeat 2 59 0 6 1358 1339 126 77 0 chr9 101363520 101363727 -22712445 - URR1A DNA MER1_type -3 223 1 6 1358 392 269 9 9 chr9 101364034 101364150 -22712022 + PB1D10 SINE Alu 1 116 -1 6 1358 827 264 11 110 chr9 101364355 101364627 -22711545 - B4A SINE B4 -44 248 4 6 1358 495 87 0 0 chr9 101369684 101369753 -22706419 + (TCCC)n Simple_repeat Simple_repeat 2 70 0 6 1358 331 226 97 62 chr9 101370595 101370708 -22705464 - MLT1N2 LTR MaLR 0 562 446 6 1358 183 80 0 0 chr9 101371175 101371200 -22704972 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1358 240 35 0 0 chr9 101371208 101371237 -22704935 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1358 237 239 129 11 chr9 101371741 101371834 -22704338 + RMER15 LTR ERVL 3 106 -469 6 1358 844 185 45 10 chr9 101371860 101372152 -22704020 - Lx5 LINE L1 -314 7146 6673 6 1358 727 298 29 4 chr9 101372222 101372461 -22703711 + RMER15 LTR ERVL 317 561 -14 6 1358 293 269 13 30 chr9 101372615 101372723 -22703449 + MTEa LTR MaLR 261 370 0 6 1358 724 225 0 0 chr9 101372964 101373106 -22703066 - B3 SINE B2 -73 143 2 6 1358 210 71 0 0 chr9 101373111 101373139 -22703033 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 6 1358 252 0 0 0 chr9 101373237 101373265 -22702907 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1358 516 271 13 34 chr9 101373269 101373418 -22702754 - B3A SINE B2 -51 147 2 6 1358 262 184 145 0 chr9 101373689 101373765 -22702407 - MER5A DNA MER1_type -101 88 2 6 1358 523 92 11 11 chr9 101373927 101374015 -22702157 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 1358 278 204 63 21 chr9 101376189 101376284 -22699888 + MLT1A LTR MaLR 25 123 -251 6 1358 328 212 13 73 chr9 101376593 101376704 -22699468 + MTE2b LTR MaLR 250 361 -18 6 1358 1543 266 52 89 chr9 101377064 101377121 -22699051 + Lx8 LINE L1 6566 6620 -853 6 1358 396 0 0 0 chr9 101377121 101377165 -22699007 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1358 1543 266 52 89 chr9 101377165 101377725 -22698447 + Lx8 LINE L1 6621 7160 -313 6 1358 471 17 0 0 chr9 101377755 101377815 -22698357 - L1Md_T LINE L1 0 6582 6523 6 1358 845 131 171 19 chr9 101377816 101378027 -22698145 + RMER4B LTR ERVK 20 262 -323 6 1358 225 208 0 0 chr9 101378043 101378120 -22698052 + (CTG)n Simple_repeat Simple_repeat 2 78 0 6 1358 294 203 88 102 chr9 101378125 101378173 -22697999 + RMER4B LTR ERVK 279 327 -258 6 1358 1284 89 0 0 chr9 101378173 101378353 -22697819 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1358 294 203 88 102 chr9 101378353 101378441 -22697731 + RMER4B LTR ERVK 328 413 -172 6 1358 282 194 141 61 chr9 101378471 101378570 -22697602 + RMER4B LTR ERVK 467 573 -12 6 1358 1108 251 48 26 chr9 101378619 101378930 -22697242 + Lx8 LINE L1 7155 7472 -1 6 1358 775 281 39 73 chr9 101379148 101379478 -22696694 + ORR1E LTR MaLR 1 319 -40 6 1358 2846 294 76 115 chr9 101379522 101380764 -22695408 + ORR1E-int LTR MaLR 78 1242 -338 6 1358 677 251 112 5 chr9 101380764 101380952 -22695220 - ID_B1 SINE B4 -16 208 1 6 1358 2846 294 76 115 chr9 101380952 101381220 -22694952 + ORR1E-int LTR MaLR 1243 1529 -51 6 1358 513 318 60 62 chr9 101381220 101381572 -22694600 + ORR1E LTR MaLR 3 353 -6 6 1358 460 310 62 79 chr9 101381676 101382030 -22694142 + ORR1E LTR MaLR 1 348 -11 6 1358 237 33 0 0 chr9 101382214 101382244 -22693928 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1358 1081 158 84 0 chr9 101382245 101382448 -22693724 - URR1A DNA MER1_type -6 220 1 6 1358 603 305 17 0 chr9 101382502 101382676 -22693496 + B4A SINE B4 114 290 -2 6 1358 278 147 15 0 chr9 101382727 101382795 -22693377 + CT-rich Low_complexity Low_complexity 1 69 0 6 1358 699 325 20 36 chr9 101382898 101383339 -22692833 + L1M4b LINE L1 1237 1670 -5664 6 1358 250 271 89 1 chr9 101383355 101383451 -22692721 - ORR1E LTR MaLR -13 357 265 6 1358 253 299 95 0 chr9 101383753 101383900 -22692272 + L1M4b LINE L1 1694 1854 -5480 6 1358 515 275 110 27 chr9 101383933 101384335 -22691837 + L1M4b LINE L1 1981 2537 -4565 6 1358 221 286 0 18 chr9 101384493 101384550 -22691622 + (TATG)n Simple_repeat Simple_repeat 4 59 0 6 1358 955 295 42 4 chr9 101384567 101384829 -22691343 - B4A SINE B4 -20 272 1 6 1358 276 296 30 10 chr9 101385034 101385133 -22691039 - MLT1D LTR MaLR 0 505 405 6 1358 2384 91 22 0 chr9 101385292 101385612 -22690560 + ORR1A2 LTR MaLR 1 327 0 6 1358 526 271 13 19 chr9 101385613 101385767 -22690405 + L1M4b LINE L1 4862 5014 -1992 6 1358 216 0 0 0 chr9 101385767 101385791 -22690381 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 6 1358 534 287 144 37 chr9 101385810 101386599 -22689573 + L1M4b LINE L1 5570 6449 -590 6 1358 532 225 155 0 chr9 101386611 101386740 -22689432 - B1F SINE Alu 0 149 1 6 1358 375 292 9 0 chr9 101386767 101386880 -22689292 + PB1D9 SINE Alu 7 120 0 7 1358 613 164 73 8 chr9 101386900 101387023 -22689149 + B1_Mus2 SINE Alu 9 139 -8 7 1358 291 54 0 0 chr9 101387023 101387060 -22689112 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 7 1358 268 229 177 14 chr9 101387592 101387699 -22688473 - B1F SINE Alu -39 110 6 7 1358 294 183 0 12 chr9 101387861 101387944 -22688228 - Lx4B LINE L1 -4 7054 6973 7 1358 7653 65 13 2 chr9 101387998 101389320 -22686852 - L1Md_F2 LINE L1 -2 6580 5246 7 1358 251 100 0 0 chr9 101389321 101389361 -22686811 + L1VL1 LINE L1 50 89 -6333 7 1358 235 150 49 16 chr9 101389431 101389492 -22686680 - ORR1E LTR MaLR -41 318 256 7 1358 339 238 38 38 chr9 101389698 101389803 -22686369 - MLT1A1 LTR MaLR -280 128 24 7 1358 321 154 37 37 chr9 101390047 101390128 -22686044 - RSINE1 SINE B4 -74 91 11 7 1358 756 304 167 30 chr9 101390879 101391611 -22684561 + HAL1b LINE L1 453 1283 -726 7 1358 777 81 0 0 chr9 101391840 101391963 -22684209 + (GA)n Simple_repeat Simple_repeat 2 124 0 7 1358 891 121 0 0 chr9 101392293 101392433 -22683739 + (TTCC)n Simple_repeat Simple_repeat 4 143 0 7 1358 1209 65 0 0 chr9 101393022 101393255 -22682917 + (CA)n Simple_repeat Simple_repeat 1 233 0 7 1358 535 270 185 7 chr9 101393294 101393581 -22682591 + MLT2C2 LTR ERVL 1 338 -126 7 1358 658 152 36 16 chr9 101393817 101394066 -22682106 + GA-rich Low_complexity Low_complexity 1 254 0 7 1358 423 228 40 81 chr9 101394209 101394333 -22681839 - RMER30 DNA MER1_type -6 196 78 7 1358 409 267 42 78 chr9 101394210 101394352 -22681820 + Charlie12 DNA MER1_type 7 143 -2730 7 1358 381 240 0 63 chr9 101394798 101394909 -22681263 + MLT1F1 LTR MaLR 442 545 -24 7 1358 282 316 91 91 chr9 101395235 101395510 -22680662 + ORR1E LTR MaLR 67 341 -18 7 1358 744 329 128 38 chr9 101395825 101396325 -22679847 - MLT1F1 LTR MaLR -8 561 1 7 1358 278 302 0 20 chr9 101396712 101396810 -22679362 - LTR16C LTR ERVL -3 486 391 7 1358 746 213 58 0 chr9 101396851 101397006 -22679166 + RSINE1 SINE B4 2 165 0 7 1358 853 182 3 10 chr9 101397006 101397296 -22678876 + (CA)n Simple_repeat Simple_repeat 1 287 0 7 1358 317 226 12 0 chr9 101397335 101397419 -22678753 + G-rich Low_complexity Low_complexity 2 86 0 7 1358 355 354 96 14 chr9 101397419 101397711 -22678461 - LTR16C LTR ERVL -93 396 81 7 1358 23 0 0 0 chr9 101398533 101398556 -22677616 + AT_rich Low_complexity Low_complexity 1 23 0 7 1358 243 254 0 0 chr9 101398607 101398666 -22677506 + A-rich Low_complexity Low_complexity 3 61 0 7 1358 323 263 67 17 chr9 101399345 101399465 -22676707 + MLT1A1 LTR MaLR 281 406 -2 7 1358 370 262 64 27 chr9 101399810 101399920 -22676252 + MER63B DNA AcHobo 320 433 -3 7 1358 229 344 10 20 chr9 101400484 101400582 -22675590 - MER20B DNA MER1_type -686 97 1 7 1358 1304 255 27 43 chr9 101400884 101401257 -22674915 - MTEa LTR MaLR -12 367 1 7 1358 327 104 0 0 chr9 101401418 101401466 -22674706 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1358 186 103 0 0 chr9 101401477 101401506 -22674666 + (GGGAGA)n Simple_repeat Simple_repeat 3 31 0 7 1358 268 245 135 19 chr9 101402112 101402216 -22673956 + PB1D10 SINE Alu 2 117 0 7 1358 226 269 25 37 chr9 101402247 101402328 -22673844 + L1M5 LINE L1 5065 5144 -1002 7 1358 270 0 0 0 chr9 101402420 101402450 -22673722 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1358 486 0 0 0 chr9 101402450 101402503 -22673669 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1358 522 129 0 0 chr9 101402776 101402861 -22673311 + (CATA)n Simple_repeat Simple_repeat 3 87 0 7 1358 21 36 0 0 chr9 101404941 101404969 -22671203 + AT_rich Low_complexity Low_complexity 1 28 0 7 1358 689 297 24 14 chr9 101406736 101406948 -22669224 + B4A SINE B4 8 221 -71 7 1358 1326 114 31 18 chr9 101406985 101407208 -22668964 + Lx2A1 LINE L1 6769 6994 -14 7 1358 335 311 116 33 chr9 101407730 101408159 -22668013 + L1ME3A LINE L1 5517 5984 -210 7 1358 396 0 0 0 chr9 101408709 101408753 -22667419 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1358 288 91 0 0 chr9 101408893 101408937 -22667235 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1358 255 301 0 72 chr9 101409188 101409299 -22666873 + MLT1A1 LTR MaLR 305 407 -1 7 1358 280 368 30 35 chr9 101409501 101409698 -22666474 - MLT1K-int LTR MaLR -434 953 758 7 1358 985 235 93 50 chr9 101410670 101410992 -22665180 - MTE2a LTR MaLR -43 336 1 7 1358 337 368 46 29 chr9 101410993 101411273 -22664899 - MLT1K LTR MaLR -111 484 200 7 1358 227 348 150 10 chr9 101411673 101411966 -22664206 - Charlie23a DNA MER1_type -3 336 3 7 1358 362 305 35 35 chr9 101411991 101412164 -22664008 + MIRb SINE MIR 58 230 -38 7 1358 939 237 26 0 chr9 101412272 101412504 -22663668 - MER2 DNA MER2_type -21 324 87 7 1358 402 238 103 11 chr9 101412539 101412668 -22663504 - B1F SINE Alu -4 145 2 7 1358 808 163 14 28 chr9 101412732 101412877 -22663295 - Lx5 LINE L1 -89 6961 6819 7 1358 204 273 112 11 chr9 101413035 101413124 -22663048 - MER5A DNA MER1_type -10 179 82 7 1358 337 319 35 64 chr9 101413131 101413302 -22662870 - MER5B DNA MER1_type 0 178 13 7 1358 704 33 11 0 chr9 101413576 101413667 -22662505 + (TC)n Simple_repeat Simple_repeat 2 93 0 7 1358 207 0 0 0 chr9 101415193 101415216 -22660956 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 7 1358 468 0 0 0 chr9 101415486 101415538 -22660634 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1358 228 192 19 0 chr9 101415777 101415829 -22660343 + (CAAT)n Simple_repeat Simple_repeat 2 54 0 7 1358 3198 227 113 3 chr9 101415941 101416093 -22660079 - Lx6 LINE L1 0 7460 7296 7 1358 765 61 0 0 chr9 101416093 101416192 -22659980 + (CAGAC)n Simple_repeat Simple_repeat 4 102 0 7 1358 3198 227 113 3 chr9 101416192 101416747 -22659425 - Lx6 LINE L1 -165 7295 6675 7 1358 250 185 122 12 chr9 101417346 101417428 -22658744 - L1MEg LINE L1 -5116 968 878 7 1358 283 233 58 11 chr9 101417739 101417826 -22658346 - L1MEg LINE L1 -5769 315 225 7 1358 227 342 14 0 chr9 101417922 101417995 -22658177 - ID2 SINE ID -9 74 1 7 1358 420 55 0 0 chr9 101418566 101418621 -22657551 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1358 434 264 27 0 chr9 101418711 101418821 -22657351 - B4 SINE B4 -178 114 2 7 1358 438 273 282 5 chr9 101419914 101420120 -22656052 + L1M2 LINE L1 5491 5753 -559 7 1358 687 282 89 43 chr9 101421240 101421606 -22654566 + MLT2C1 LTR ERVL 3 404 -10 7 1358 219 146 0 0 chr9 101421836 101421877 -22654295 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1358 929 271 103 4 chr9 101422371 101422634 -22653538 + B4A SINE B4 4 292 0 7 1358 30 69 0 0 chr9 101422880 101422938 -22653234 + AT_rich Low_complexity Low_complexity 1 58 0 7 1358 555 271 31 31 chr9 101423342 101423567 -22652605 + L5 LINE RTE 2040 2264 -1 7 1358 195 323 28 21 chr9 101424066 101424173 -22651999 + MIRc SINE MIR 86 202 -66 7 1358 227 156 0 43 chr9 101425824 101425871 -22650301 + GA-rich Low_complexity Low_complexity 4 48 0 7 1358 801 255 22 1 chr9 101426446 101426638 -22649534 + B3A SINE B2 2 201 -15 7 1358 254 278 14 0 chr9 101426696 101426768 -22649404 + GA-rich Low_complexity Low_complexity 1 73 0 7 1358 293 309 77 11 chr9 101426847 101427030 -22649142 + HAL1 LINE L1 1400 1594 -913 7 1358 259 370 32 25 chr9 101427563 101427665 -22648507 + LTR81C LTR ERV1? 816 918 -235 7 1358 2123 112 18 58 chr9 101427665 101428008 -22648164 + ORR1A4 LTR MaLR 1 329 0 7 1358 259 370 32 25 chr9 101428008 101428063 -22648109 + LTR81C LTR ERV1? 919 973 -180 7 1358 1443 147 4 22 chr9 101428224 101428453 -22647719 + URR1B DNA MER1_type 1 225 0 7 1358 1758 88 4 0 chr9 101428495 101428735 -22647437 + L1_Mus1 LINE L1 6326 6566 -1 7 1358 319 248 58 58 chr9 101429059 101429179 -22646993 + MLT1A1 LTR MaLR 1 120 -245 7 1358 322 250 67 35 chr9 101429243 101429356 -22646816 + MLT1A1 LTR MaLR 248 396 -12 7 1358 304 284 23 74 chr9 101430492 101430667 -22645505 + MER53 DNA hAT 19 184 -9 7 1358 184 331 72 22 chr9 101430730 101430869 -22645303 - MIRb SINE MIR -70 198 53 7 1358 261 0 0 0 chr9 101431179 101431208 -22644964 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1358 253 344 15 47 chr9 101431282 101431449 -22644723 + L2a LINE L2 3219 3425 -1 7 1358 246 262 133 19 chr9 101432234 101432339 -22643833 + MLT1H1 LTR MaLR 203 319 -236 7 1358 269 134 0 4 chr9 101432339 101432391 -22643781 - MT2A LTR ERVL 0 584 488 7 1358 189 0 0 0 chr9 101432397 101432418 -22643754 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1358 592 256 134 59 chr9 101432418 101432860 -22643312 - MT2A LTR ERVL -125 476 1 7 1358 330 276 101 71 chr9 101433816 101433984 -22642188 - MTD-int LTR MaLR -1084 174 2 7 1358 997 280 137 11 chr9 101433985 101434357 -22641815 - MTD LTR MaLR 0 419 1 7 1358 554 372 56 7 chr9 101434916 101435203 -22640969 + LTR16B1 LTR ERVL 180 480 0 7 1358 378 0 0 0 chr9 101435335 101435377 -22640795 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1358 1091 79 0 0 chr9 101435377 101435516 -22640656 - B1_Mus1 SINE Alu -9 139 1 7 1358 303 278 0 0 chr9 101435524 101435650 -22640522 + (TG)n Simple_repeat Simple_repeat 1 126 0 7 1358 370 369 25 45 chr9 101435722 101435921 -22640251 - B4A SINE B4 -96 196 2 7 1358 364 272 114 71 chr9 101435927 101436208 -22639964 - L1MEe LINE L1 -3972 2036 1744 7 1358 393 339 76 53 chr9 101436722 101437024 -22639148 + MER90 LTR ERV1 267 575 0 7 1358 258 296 110 21 chr9 101437041 101437186 -22638986 - L1MEe LINE L1 -4626 1382 1225 7 1358 1762 142 51 33 chr9 101437207 101437542 -22638630 + Lx LINE L1 6311 6651 -3 7 1358 21 0 0 0 chr9 101437878 101437899 -22638273 + AT_rich Low_complexity Low_complexity 1 21 0 7 1358 5902 115 95 17 chr9 101437912 101439128 -22637044 - Lx LINE L1 -6 6648 5314 7 1358 8806 98 9 2 chr9 101439123 101441174 -22634998 - L1VL4 LINE L1 -1465 2094 29 7 1358 261 357 21 0 chr9 101441717 101441857 -22634315 - L1MEe LINE L1 -4735 1349 1207 7 1358 233 312 0 12 chr9 101441862 101441943 -22634229 + CT-rich Low_complexity Low_complexity 2 81 0 7 1358 24 67 0 0 chr9 101442099 101442144 -22634028 + AT_rich Low_complexity Low_complexity 1 45 0 8 1358 747 357 72 27 chr9 101442615 101443104 -22633068 + MLT1G LTR MaLR 11 521 -70 8 1358 3818 65 0 88 chr9 101444255 101444645 -22631527 - MusHAL1 LINE L1 -1255 1457 1107 8 1358 5205 70 1 5 chr9 101444645 101445309 -22630863 + L1_Mus1 LINE L1 5906 6567 0 8 1358 3818 65 0 88 chr9 101445309 101445511 -22630661 - MusHAL1 LINE L1 -1606 1106 917 8 1358 180 0 0 0 chr9 101445522 101445542 -22630630 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8 1358 243 225 0 0 chr9 101445674 101445745 -22630427 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 1358 1169 188 196 0 chr9 101446160 101446514 -22629658 - MTD LTR MaLR 0 419 3 8 1358 744 180 0 0 chr9 101447834 101447995 -22628177 + (TG)n Simple_repeat Simple_repeat 1 161 0 8 1358 237 221 0 0 chr9 101448007 101448075 -22628097 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 1358 768 173 0 0 chr9 101448087 101448266 -22627906 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1358 498 268 24 0 chr9 101449217 101449344 -22626828 - MER94 DNA AcHobo -3 131 2 8 1358 199 226 79 16 chr9 101449510 101449573 -22626599 + MIRb SINE MIR 24 90 -178 8 1359 3819 244 130 97 chr9 101449944 101450502 -22625670 - L1_Mur3 LINE L1 -359 5521 4867 8 1359 501 158 21 0 chr9 101450502 101450597 -22625575 + ORR1D2 LTR MaLR 274 370 0 8 1359 3819 244 130 97 chr9 101450597 101450887 -22625285 - L1_Mur3 LINE L1 -359 4866 4524 8 1359 1214 48 0 7 chr9 101450887 101451035 -22625137 - B1_Mm SINE Alu 0 147 1 8 1359 3819 244 130 97 chr9 101451035 101451713 -22624459 - L1_Mur3 LINE L1 -1357 4523 3846 8 1359 2498 7 0 4 chr9 101452122 101452401 -22623771 + L1Md_A LINE L1 6305 6582 0 8 1359 544 103 10 20 chr9 101452521 101452620 -22623552 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 8 1359 991 69 23 11 chr9 101452631 101452807 -22623365 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 8 1359 793 287 40 12 chr9 101452807 101453132 -22623040 + RLTR15 LTR ERVK 10 343 -16 8 1359 267 79 0 0 chr9 101453214 101453252 -22622920 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 8 1359 285 29 0 0 chr9 101453840 101453874 -22622298 + (CAG)n Simple_repeat Simple_repeat 2 35 0 8 1359 606 28 0 0 chr9 101454429 101454501 -22621671 + (TC)n Simple_repeat Simple_repeat 2 73 0 8 1359 776 232 166 30 chr9 101455176 101455478 -22620694 - ORR1E LTR MaLR -16 343 1 8 1359 311 291 77 55 chr9 101455890 101456072 -22620100 + MIRb SINE MIR 82 267 -1 8 1359 432 0 0 0 chr9 101456829 101456877 -22619295 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 1359 351 127 0 0 chr9 101456877 101456939 -22619233 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1359 469 271 103 7 chr9 101457040 101457185 -22618987 - MER58A DNA MER1_type -65 159 1 8 1359 338 189 14 0 chr9 101458098 101458172 -22618000 - HAL1-3A_ME LINE L1 -809 2049 1975 8 1359 796 167 0 22 chr9 101458188 101458372 -22617800 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1359 440 308 0 0 chr9 101458824 101458931 -22617241 + B4A SINE B4 182 288 -4 8 1359 470 342 40 61 chr9 101459724 101460001 -22616171 - MLT2D LTR ERVL -41 373 103 8 1359 1057 279 21 25 chr9 101460070 101460341 -22615831 - B4A SINE B4 0 292 22 8 1359 2021 171 30 33 chr9 101460341 101460709 -22615463 - ORR1B2 LTR MaLR 0 367 1 8 1359 1057 279 21 25 chr9 101460709 101460723 -22615449 - B4A SINE B4 -271 21 8 8 1359 370 261 0 0 chr9 101460735 101460827 -22615345 - MLT2D LTR ERVL -296 101 10 8 1359 669 274 64 16 chr9 101461119 101461368 -22614804 - RMER15 LTR ERVL -37 538 278 8 1359 343 252 126 0 chr9 101461601 101461712 -22614460 - MIR SINE MIR -123 139 15 8 1359 927 73 0 0 chr9 101462420 101462544 -22613628 + (TCTG)n Simple_repeat Simple_repeat 3 126 0 8 1359 287 203 14 0 chr9 101462555 101462629 -22613543 + (CCTA)n Simple_repeat Simple_repeat 1 75 0 8 1359 446 256 44 22 chr9 101462682 101462818 -22613354 - RSINE1 SINE B4 -25 140 2 8 1359 459 52 0 0 chr9 101463247 101463305 -22612867 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 1359 180 0 0 0 chr9 101463813 101463833 -22612339 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 8 1359 748 255 56 5 chr9 101464275 101464306 -22611866 - B3 SINE B2 -8 208 174 8 1359 441 0 0 0 chr9 101464306 101464355 -22611817 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1359 748 255 56 5 chr9 101464355 101464520 -22611652 - B3 SINE B2 -43 173 4 8 1359 321 26 0 0 chr9 101464528 101464566 -22611606 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1359 325 167 0 16 chr9 101464566 101464627 -22611545 + ORR1B1-int LTR MaLR 818 877 -632 8 1359 4853 11 0 7 chr9 101464645 101465186 -22610986 - L1Md_T LINE L1 0 6582 6046 8 1359 204 40 0 0 chr9 101466306 101466331 -22609841 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 8 1359 333 273 39 39 chr9 101466396 101466411 -22609761 + ID SINE ID 64 78 -146 8 1359 489 317 0 0 chr9 101466411 101466531 -22609641 + PB1D7 SINE Alu 1 120 0 8 1359 502 355 68 3 chr9 101466839 101467150 -22609022 + Helitron3Na_Mam RC Helitron 87 417 -69 8 1359 201 276 0 0 chr9 101469847 101469905 -22606267 - L2b LINE L2 -29 3346 3289 8 1359 486 88 0 0 chr9 101470249 101470317 -22605855 + (CCA)n Simple_repeat Simple_repeat 1 68 0 8 1359 234 312 51 15 chr9 101470358 101470470 -22605702 - B4A SINE B4 -31 134 17 8 1359 753 172 3 16 chr9 101470694 101471015 -22605157 + (TG)n Simple_repeat Simple_repeat 1 316 0 8 1359 242 217 0 0 chr9 101471519 101471565 -22604607 - B4A SINE B4 -4 288 243 8 1359 398 258 10 40 chr9 101471660 101471761 -22604411 - RSINE1 SINE B4 -66 99 2 8 1359 369 0 0 0 chr9 101471765 101471806 -22604366 + (TTA)n Simple_repeat Simple_repeat 2 42 0 8 1359 424 283 123 79 chr9 101471806 101472009 -22604163 - B4A SINE B4 -77 215 4 8 1359 286 259 0 0 chr9 101472659 101472717 -22603455 + MIRb SINE MIR 198 255 -13 8 1359 500 353 54 35 chr9 101473079 101473337 -22602835 + LTR33 LTR ERVL 155 417 -98 8 1359 298 277 0 0 chr9 101473395 101473478 -22602694 - MER33 DNA MER1_type 0 324 242 8 1359 246 357 44 39 chr9 101473465 101473669 -22602503 - MER21B LTR ERV1 -347 516 312 8 1359 263 237 112 10 chr9 101473721 101473819 -22602353 - MER21B LTR ERV1 -654 209 102 8 1359 274 77 77 0 chr9 101473926 101473978 -22602194 + (TCTCTG)n Simple_repeat Simple_repeat 4 59 0 8 1359 265 308 11 11 chr9 101473979 101474071 -22602101 + MTEa LTR MaLR 201 292 -87 8 1359 652 263 28 38 chr9 101474087 101474300 -22601872 + L1MC4 LINE L1 7386 7596 -446 8 1359 261 271 34 45 chr9 101474612 101474701 -22601471 + L2a LINE L2 3026 3113 -313 8 1359 226 162 0 0 chr9 101474843 101474880 -22601292 + MLT1K LTR MaLR 199 235 -360 8 1359 29 0 0 0 chr9 101475006 101475035 -22601137 + AT_rich Low_complexity Low_complexity 1 29 0 8 1359 781 117 322 17 chr9 101475075 101475249 -22600923 - Lx LINE L1 -1 6653 6427 8 1359 571 67 0 0 chr9 101475247 101475322 -22600850 - Lx2 LINE L1 -352 6645 6571 8 1359 312 197 62 50 chr9 101475336 101475416 -22600756 - MER21B LTR ERV1 -635 228 148 8 1359 6681 122 14 6 chr9 101475471 101476835 -22599337 - Lx2 LINE L1 -432 6565 5192 8 1359 7007 62 10 37 chr9 101476831 101477899 -22598273 - L1VL4 LINE L1 -1708 1851 812 8 1359 525 32 0 0 chr9 101477899 101477962 -22598210 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1359 4170 72 21 7 chr9 101477962 101478366 -22597806 - L1VL4 LINE L1 -5491 811 400 8 1359 322 361 72 63 chr9 101479301 101479540 -22596632 + MLT1H LTR MaLR 30 263 -286 8 1359 2096 166 201 42 chr9 101479540 101479992 -22596180 + RLTR28 LTR ERVL 1 524 0 8 1359 322 361 72 63 chr9 101479992 101480263 -22595909 + MLT1H LTR MaLR 264 544 -5 8 1359 345 250 116 30 chr9 101481136 101481336 -22594836 + L1M5 LINE L1 4118 4328 -1818 8 1359 374 229 45 18 chr9 101481561 101481672 -22594500 - L1ME3B LINE L1 -348 5892 5779 8 1359 240 342 59 30 chr9 101481860 101482062 -22594110 - L1MEg LINE L1 -1119 5027 4820 8 1359 745 127 35 17 chr9 101482287 101482633 -22593539 + (CA)n Simple_repeat Simple_repeat 1 352 0 8 1359 1087 35 57 3 chr9 101482644 101482961 -22593211 + (CA)n Simple_repeat Simple_repeat 1 334 0 8 1359 353 251 77 83 chr9 101482961 101483261 -22592911 - L1MEg LINE L1 -1579 4567 4270 8 1359 590 300 70 100 chr9 101483467 101483837 -22592335 + ORR1E LTR MaLR 1 359 0 8 1359 543 290 134 34 chr9 101483843 101484164 -22592008 + ORR1E-int LTR MaLR 5 357 -1223 8 1359 1315 313 115 61 chr9 101484287 101485202 -22590970 + ORR1E-int LTR MaLR 563 1527 -53 8 1359 417 308 16 57 chr9 101485202 101485395 -22590777 + ORR1E LTR MaLR 1 185 -174 8 1359 418 316 91 44 chr9 101485537 101485855 -22590317 + L1M5 LINE L1 2878 3210 -2936 8 1359 901 158 14 14 chr9 101485855 101486003 -22590169 + B1_Mus1 SINE Alu 1 148 0 8 1359 747 293 60 32 chr9 101486496 101486778 -22589394 - B4A SINE B4 0 292 3 8 1359 3731 120 18 3 chr9 101486788 101487356 -22588816 + Lx2 LINE L1 6422 6997 0 8 1359 2207 202 83 18 chr9 101487356 101487804 -22588368 - Lx6 LINE L1 -18 7442 6966 8 1359 300 296 24 8 chr9 101487999 101488125 -22588047 + L1M5 LINE L1 3756 3883 -2263 8 1359 519 288 120 59 chr9 101488574 101488998 -22587174 - L1MEg LINE L1 -4577 1665 1216 8 1359 324 301 102 61 chr9 101489151 101489399 -22586773 + MLT2B3 LTR ERVL 73 326 -194 8 1359 1416 224 10 3 chr9 101489423 101489723 -22586449 - MTD LTR MaLR -117 302 1 8 1359 232 281 0 30 chr9 101489732 101489798 -22586374 + MLT2B3 LTR ERVL 437 500 -62 8 1359 324 0 0 0 chr9 101489864 101489900 -22586272 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1359 357 324 77 44 chr9 101489936 101490210 -22585962 - L1MEg LINE L1 -5071 1171 889 8 1359 939 275 21 28 chr9 101490617 101490905 -22585267 - B4A SINE B4 -6 286 1 8 1359 209 324 86 6 chr9 101490906 101491080 -22585092 - MIR SINE MIR -47 215 28 8 1359 598 241 69 11 chr9 101491217 101491406 -22584766 - MER3 DNA MER1_type 0 209 10 8 1359 1013 258 9 0 chr9 101491999 101492212 -22583960 - B3 SINE B2 0 216 2 8 1359 730 242 20 40 chr9 101492294 101492496 -22583676 - B3A SINE B2 0 198 1 8 1359 442 355 41 31 chr9 101492857 101493052 -22583120 - MLT1I LTR MaLR -121 290 94 8 1359 680 89 10 0 chr9 101493222 101493323 -22582849 + (TCC)n Simple_repeat Simple_repeat 3 104 0 8 1359 268 326 74 7 chr9 101494168 101494316 -22581856 + MLT1A LTR MaLR 215 372 -2 8 1359 267 189 0 0 chr9 101495448 101495501 -22580671 + (ATG)n Simple_repeat Simple_repeat 2 54 0 8 1359 423 176 0 0 chr9 101496020 101496111 -22580061 + GA-rich Low_complexity Low_complexity 1 91 0 8 1359 273 57 0 0 chr9 101496473 101496508 -22579664 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 1359 328 192 0 19 chr9 101497205 101497311 -22578861 + (TG)n Simple_repeat Simple_repeat 1 104 0 8 1359 498 75 0 0 chr9 101497457 101497524 -22578648 + (TG)n Simple_repeat Simple_repeat 2 68 0 8 1359 288 320 39 0 chr9 101498113 101498216 -22577956 - MER5A1 DNA MER1_type -46 120 14 8 1359 1362 257 108 50 chr9 101498217 101498584 -22577588 + MER34A LTR ERV1 1 369 -202 8 1359 264 59 0 0 chr9 101498584 101498618 -22577554 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1359 1362 257 108 50 chr9 101498618 101498787 -22577385 + MER34A LTR ERV1 370 567 -4 8 1359 623 252 106 87 chr9 101499168 101499489 -22576683 - Lx8 LINE L1 -1 7472 7146 9 1359 2240 156 42 14 chr9 101499491 101499921 -22576251 + RLTR12B LTR ERVK 1 442 -86 9 1359 1684 265 36 5 chr9 101500001 101500441 -22575731 - Lx8 LINE L1 -459 7014 6561 1 1359 596 263 86 0 chr9 101500446 101500632 -22575540 + L1_Rod LINE L1 5589 5790 -57 2 1359 517 120 11 11 chr9 101500635 101500728 -22575444 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1359 651 218 8 8 chr9 101501619 101501753 -22574419 + Lx9 LINE L1 7054 7187 -457 4 1359 501 222 0 0 chr9 101501899 101502070 -22574102 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 1359 464 222 3 6 chr9 101502124 101502470 -22573702 + (CA)n Simple_repeat Simple_repeat 1 344 0 5 1359 22 0 0 0 chr9 101503681 101503703 -22572469 + AT_rich Low_complexity Low_complexity 1 22 0 6 1359 405 58 0 0 chr9 101503873 101503925 -22572247 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1359 253 223 124 0 chr9 101503944 101504062 -22572110 - Lx8 LINE L1 -378 5925 5804 1 1359 417 20 0 0 chr9 101504062 101504112 -22572060 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1359 306 264 7 25 chr9 101504112 101504235 -22571937 - Lx8 LINE L1 -540 5772 5654 1 1359 189 0 0 0 chr9 101504358 101504379 -22571793 + (TTG)n Simple_repeat Simple_repeat 1 21 0 9 1359 210 261 0 0 chr9 101505534 101505580 -22570592 + A-rich Low_complexity Low_complexity 1 46 0 1 1359 936 103 0 0 chr9 101507370 101507526 -22568646 + (TCTA)n Simple_repeat Simple_repeat 4 159 0 1 1359 189 340 113 0 chr9 101507541 101507630 -22568542 + MIRb SINE MIR 137 237 -31 1 1359 602 305 129 9 chr9 101507630 101507948 -22568224 + ORR1E LTR MaLR 4 359 0 1 1359 189 340 113 0 chr9 101507948 101507964 -22568208 + MIRb SINE MIR 238 253 -15 1 1359 487 225 62 9 chr9 101510190 101510302 -22565870 - PB1D7 SINE Alu -2 118 1 1 1359 1710 50 0 14 chr9 101511305 101511528 -22564644 + L1Md_F2 LINE L1 6363 6582 0 1 1359 397 263 10 0 chr9 101511816 101511915 -22564257 + PB1D10 SINE Alu 2 101 -16 1 1359 498 243 178 41 chr9 101512054 101512251 -22563921 - MIR SINE MIR -14 248 25 1 1359 666 87 0 0 chr9 101512538 101512641 -22563531 + (TC)n Simple_repeat Simple_repeat 2 104 0 1 1359 252 0 0 0 chr9 101512641 101512668 -22563504 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1359 225 322 0 0 chr9 101513330 101513389 -22562783 + L2c LINE L2 3329 3387 0 2 1359 467 60 15 0 chr9 101513872 101513939 -22562233 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1359 436 261 161 13 chr9 101513939 101514094 -22562078 - B3 SINE B2 -38 178 1 2 1359 186 326 45 0 chr9 101514146 101514235 -22561937 + MIR SINE MIR 25 117 -145 2 1359 3013 30 16 6 chr9 101514236 101514602 -22561570 + L1Md_F3 LINE L1 6215 6584 0 2 1359 241 24 48 24 chr9 101514619 101514661 -22561511 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2 1359 297 0 0 0 chr9 101515172 101515205 -22560967 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1359 1244 241 48 38 chr9 101517835 101518124 -22558048 + B4A SINE B4 1 292 0 2 1359 299 130 0 18 chr9 101518126 101518181 -22557991 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1359 474 137 0 0 chr9 101520575 101520670 -22555502 + (GA)n Simple_repeat Simple_repeat 1 95 0 2 1359 496 232 0 0 chr9 101520796 101520895 -22555277 - B1F SINE Alu -8 141 43 3 1359 296 266 112 26 chr9 101520895 101520912 -22555260 - ID_B1 SINE B4 -8 216 91 3 1359 456 205 0 0 chr9 101521489 101521572 -22554600 - ID4 SINE ID 0 83 1 3 1359 339 318 89 31 chr9 101521617 101521841 -22554331 - MLT1A0 LTR MaLR -3 362 126 3 1359 1093 321 76 21 chr9 101521882 101522501 -22553671 + L1ME3 LINE L1 5414 6069 -93 3 1359 432 0 0 0 chr9 101522501 101522549 -22553623 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1359 1093 321 76 21 chr9 101522549 101522604 -22553568 + L1ME3 LINE L1 6070 6125 -37 3 1359 455 0 18 0 chr9 101522791 101522846 -22553326 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1359 21 0 0 0 chr9 101523537 101523558 -22552614 + AT_rich Low_complexity Low_complexity 1 21 0 3 1359 541 314 184 25 chr9 101524758 101525235 -22550937 + MLT2B4 LTR ERVL 1 553 -3 3 1359 762 289 93 12 chr9 101525379 101525638 -22550534 + B4A SINE B4 5 284 -8 3 1359 188 67 0 32 chr9 101525705 101525736 -22550436 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 4 1359 1033 150 194 0 chr9 101525870 101526050 -22550122 - B3 SINE B2 -1 215 1 4 1359 189 0 0 0 chr9 101529535 101529556 -22546616 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 1359 473 265 63 120 chr9 101529623 101529908 -22546264 + MLT1C LTR MaLR 2 273 -194 4 1359 257 295 51 43 chr9 101529925 101530042 -22546130 + MLT1C LTR MaLR 327 444 -23 4 1359 218 360 9 9 chr9 101531095 101531207 -22544965 - L2 LINE L2 -955 2464 2353 4 1359 870 275 16 56 chr9 101531467 101531771 -22544401 + B4A SINE B4 1 292 0 4 1359 641 294 88 62 chr9 101531808 101532080 -22544092 + B4 SINE B4 14 292 0 4 1359 194 299 26 13 chr9 101532407 101532485 -22543687 - MIR3 SINE MIR -9 199 121 4 1359 324 0 0 0 chr9 101532741 101532777 -22543395 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1359 387 269 99 45 chr9 101533530 101533752 -22542420 - ORR1E LTR MaLR -125 234 1 4 1359 1223 61 0 0 chr9 101533936 101534083 -22542089 + B1_Mus2 SINE Alu 1 147 0 5 1359 189 0 0 0 chr9 101534083 101534104 -22542068 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1359 879 216 14 45 chr9 101534105 101534328 -22541844 - B3 SINE B2 0 216 1 5 1359 869 97 0 7 chr9 101535353 101535488 -22540684 + (TG)n Simple_repeat Simple_repeat 2 135 0 5 1359 932 243 101 91 chr9 101536992 101537367 -22538805 - MTE2a LTR MaLR 0 379 1 5 1359 429 20 0 0 chr9 101537484 101537534 -22538638 + (TATG)n Simple_repeat Simple_repeat 2 51 0 5 1359 260 343 77 24 chr9 101537570 101537740 -22538432 + L1MCa LINE L1 324 502 -6006 5 1359 828 284 133 25 chr9 101537910 101538818 -22537354 + L1MC3 LINE L1 554 1642 -5109 5 1359 278 309 0 20 chr9 101539117 101539216 -22536956 - MLT1A1 LTR MaLR 0 408 312 5 1359 2119 270 100 36 chr9 101539500 101539961 -22536211 + L1MC3 LINE L1 3945 4431 -2133 5 1359 2399 93 6 3 chr9 101539961 101540285 -22535887 - ORR1A2 LTR MaLR 0 327 3 5 1359 2119 270 100 36 chr9 101540285 101540922 -22535250 + L1MC3 LINE L1 4432 5113 -1451 5 1359 790 298 19 128 chr9 101540939 101541362 -22534810 + MTE2a LTR MaLR 3 379 0 6 1359 512 286 186 46 chr9 101541370 101541762 -22534410 + L1MC3 LINE L1 5139 5585 -979 5 1359 303 328 75 8 chr9 101541763 101541883 -22534289 + RSINE1 SINE B4 4 131 -34 6 1359 342 0 0 0 chr9 101541884 101541922 -22534250 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1359 25 0 0 0 chr9 101541936 101541961 -22534211 + AT_rich Low_complexity Low_complexity 1 25 0 6 1359 565 299 45 0 chr9 101542020 101542197 -22533975 + ORR1D2 LTR MaLR 1 185 -185 6 1359 441 0 0 0 chr9 101542207 101542256 -22533916 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1359 1280 174 77 92 chr9 101542285 101542637 -22533535 - ORR1A3 LTR MaLR 0 326 6 6 1359 1674 262 68 50 chr9 101542642 101543289 -22532883 + L1MC3 LINE L1 5958 6616 -1587 5 1359 225 0 0 0 chr9 101543302 101543327 -22532845 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1359 558 0 0 0 chr9 101543337 101543399 -22532773 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1359 2120 304 79 11 chr9 101543400 101544338 -22531834 + L1MC3 LINE L1 6719 7720 -483 5 1359 3719 149 18 10 chr9 101544341 101544951 -22531221 - Lx4A LINE L1 0 7058 6444 6 1359 14110 110 30 34 chr9 101544966 101545285 -22530887 - L1_Mur2 LINE L1 -2329 3548 3222 7 1359 1194 28 0 0 chr9 101545285 101545427 -22530745 + (TCTCCC)n Simple_repeat Simple_repeat 6 147 0 7 1359 14110 110 30 34 chr9 101545427 101545485 -22530687 - L1_Mur2 LINE L1 -2656 3221 3178 7 1359 5271 145 20 7 chr9 101545485 101546334 -22529838 - Lx2B LINE L1 -2 6998 6139 7 1359 14110 116 37 28 chr9 101546334 101548896 -22527276 - L1_Mur2 LINE L1 -2700 3177 580 7 1359 659 277 94 70 chr9 101549008 101549254 -22526918 + L1MC3 LINE L1 7781 8025 -178 5 1359 186 43 0 0 chr9 101549254 101549277 -22526895 + (TTAGGG)n Simple_repeat Simple_repeat 5 27 0 7 1359 659 277 94 70 chr9 101549277 101549433 -22526739 + L1MC3 LINE L1 8026 8193 -10 5 1359 190 300 174 14 chr9 101549644 101549804 -22526368 - MIR3 SINE MIR -72 196 8 7 1359 244 308 44 51 chr9 101549885 101550022 -22526150 - MIRb SINE MIR -104 164 29 7 1359 415 352 52 52 chr9 101551075 101551324 -22524848 - B4A SINE B4 -3 289 37 7 1359 1481 261 71 3 chr9 101551324 101551716 -22524456 + MTD LTR MaLR 1 419 0 7 1359 415 352 52 52 chr9 101551716 101551754 -22524418 - B4A SINE B4 -256 36 2 7 1359 338 292 36 30 chr9 101552230 101552396 -22523776 + LTR88b LTR Gypsy? 28 194 -643 7 1359 243 310 40 10 chr9 101552444 101552545 -22523627 - L2b LINE L2 -3 3372 3269 7 1359 2145 278 97 37 chr9 101552990 101553011 -22523161 - Lx8 LINE L1 -3 7470 7450 8 1359 606 82 0 0 chr9 101553011 101553096 -22523076 + (TG)n Simple_repeat Simple_repeat 2 86 0 8 1359 2145 278 97 37 chr9 101553096 101553560 -22522612 - Lx8 LINE L1 -24 7449 6943 8 1359 975 25 0 0 chr9 101553560 101553678 -22522494 + (TCTA)n Simple_repeat Simple_repeat 3 120 0 8 1359 2145 278 97 37 chr9 101553678 101553858 -22522314 - Lx8 LINE L1 -531 6942 6762 8 1359 284 0 28 0 chr9 101553858 101553894 -22522278 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 8 1359 2145 278 97 37 chr9 101553894 101554029 -22522143 - Lx8 LINE L1 -712 6761 6623 8 1359 418 221 185 7 chr9 101554307 101554453 -22521719 + L1MEc LINE L1 49 220 -6180 8 1359 27 0 0 0 chr9 101554662 101554689 -22521483 + AT_rich Low_complexity Low_complexity 1 27 0 8 1359 1960 145 15 27 chr9 101555428 101555761 -22520411 - ORR1A4 LTR MaLR 0 329 1 8 1359 21 0 0 0 chr9 101557159 101557180 -22518992 + AT_rich Low_complexity Low_complexity 1 21 0 8 1359 381 294 42 30 chr9 101557506 101557671 -22518501 + MER5A DNA MER1_type 1 167 -22 8 1359 186 374 22 0 chr9 101557719 101557810 -22518362 - L2 LINE L2 -633 2786 2694 8 1359 1226 143 113 0 chr9 101558601 101558804 -22517368 + URR1A DNA MER1_type 1 226 0 9 1359 403 333 61 13 chr9 101558813 101559044 -22517128 + MLT1C LTR MaLR 34 275 -192 9 1359 818 291 44 17 chr9 101560902 101561246 -22514926 - MLT1A0 LTR MaLR 0 408 9 9 1359 226 336 83 28 chr9 101561357 101561501 -22514671 - L3 LINE CR1 -212 4277 4126 9 1359 535 254 56 0 chr9 101562446 101562572 -22513600 + ID_B1 SINE B4 85 217 -7 9 1359 774 305 62 40 chr9 101562586 101563009 -22513163 - L1MB2 LINE L1 -148 6023 5592 9 1359 857 281 93 76 chr9 101563517 101564410 -22511762 - L1MC5 LINE L1 -60 7901 6994 9 1359 1129 68 0 26 chr9 101564549 101564701 -22511471 - B1_Mus1 SINE Alu 0 148 1 9 1359 277 270 92 58 chr9 101564770 101564943 -22511229 - L1MC5 LINE L1 -1089 6872 6694 9 1359 582 15 0 0 chr9 101565233 101565300 -22510872 + (GA)n Simple_repeat Simple_repeat 1 67 0 9 1359 228 303 0 20 chr9 101565315 101565416 -22510756 + Lx7 LINE L1 7579 7677 -19 9 1359 285 29 0 0 chr9 101565434 101565468 -22510704 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1359 474 219 106 31 chr9 101565770 101565929 -22510243 - RCHARR1 DNA MER1_type 0 974 804 1 1359 1036 280 26 46 chr9 101565929 101566319 -22509853 - RLTR14 LTR ERV1 0 382 1 1 1359 1877 218 47 15 chr9 101566319 101566845 -22509327 - RCHARR1 DNA MER1_type -167 807 265 1 1359 1406 266 34 25 chr9 101566854 101566992 -22509180 - Lx8 LINE L1 0 7473 7335 1 1359 1165 90 6 6 chr9 101566992 101567170 -22509002 + (TTC)n Simple_repeat Simple_repeat 1 178 0 1 1359 1406 266 34 25 chr9 101567170 101567501 -22508671 - Lx8 LINE L1 -139 7334 7000 1 1359 2695 139 86 21 chr9 101567501 101568024 -22508148 + RMER6A LTR ERVK 1 557 -199 1 1359 1060 331 55 12 chr9 101568024 101568446 -22507726 - Lx8 LINE L1 -690 6783 6344 1 1359 6876 51 1 1 chr9 101568415 101569250 -22506922 + L1_Mm LINE L1 4752 5586 -297 1 1359 8575 36 2 0 chr9 101569250 101570244 -22505928 + L1Md_F2 LINE L1 5587 6582 0 1 1359 538 293 101 0 chr9 101570245 101570433 -22505739 - Lx8 LINE L1 -1081 6392 6186 1 1359 1874 272 68 21 chr9 101570744 101571537 -22504635 - Lx8 LINE L1 -1679 5965 5161 1 1359 647 300 17 0 chr9 101571560 101571740 -22504432 - RCHARR1 DNA MER1_type -712 262 80 1 1359 526 295 20 7 chr9 101571760 101571910 -22504262 - Lx8 LINE L1 -234 7239 7088 1 1359 432 111 0 0 chr9 101571976 101572048 -22504124 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1359 1036 177 240 26 chr9 101572152 101572429 -22503743 - ORR1B1 LTR MaLR -14 380 46 1 1359 645 14 0 0 chr9 101572429 101572503 -22503669 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1359 1036 177 240 26 chr9 101572503 101572538 -22503634 - ORR1B1 LTR MaLR -349 45 2 1 1359 361 276 58 36 chr9 101572678 101572817 -22503355 - MLT1A0 LTR MaLR -127 238 97 1 1359 954 148 0 0 chr9 101572821 101572997 -22503175 + (TCC)n Simple_repeat Simple_repeat 3 178 0 1 1359 1020 146 0 0 chr9 101573015 101573193 -22502979 + (TCC)n Simple_repeat Simple_repeat 3 180 0 1 1359 333 0 0 0 chr9 101574463 101574500 -22501672 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1359 615 221 0 0 chr9 101574500 101574663 -22501509 + (TG)n Simple_repeat Simple_repeat 1 163 0 1 1359 882 28 0 0 chr9 101575001 101575110 -22501062 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 1359 306 241 146 18 chr9 101575230 101575340 -22500832 - RSINE1 SINE B4 -38 127 4 1 1359 688 101 16 0 chr9 101575353 101575482 -22500690 + (TC)n Simple_repeat Simple_repeat 1 131 0 1 1359 189 0 0 0 chr9 101575496 101575517 -22500655 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1359 335 185 15 0 chr9 101575956 101576021 -22500151 - RCHARR1 DNA MER1_type -738 236 171 1 1359 4005 81 4 11 chr9 101576673 101577222 -22498950 - L1_Mus3 LINE L1 0 6638 6094 1 1359 642 126 0 0 chr9 101577222 101577317 -22498855 + L1_Mus3 LINE L1 5983 6077 -561 1 1359 1010 260 104 11 chr9 101579384 101579664 -22496508 + MTEa LTR MaLR 74 379 0 1 1359 229 328 104 52 chr9 101580379 101580514 -22495658 + ORR1E LTR MaLR 1 142 -217 1 169 192 216 0 0 chr9 101580785 101580836 -22495336 + (TGG)n Simple_repeat Simple_repeat 1 51 0 1 1360 788 303 61 25 chr9 101581542 101581904 -22494268 - L1ME1 LINE L1 -214 5965 5591 1 1360 297 279 19 87 chr9 101581913 101582074 -22494098 - B3A SINE B2 -2 196 47 1 1360 540 0 0 0 chr9 101582595 101582655 -22493517 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1360 237 127 109 0 chr9 101582673 101582728 -22493444 - L1M LINE L1 -794 5650 5590 1 1360 939 190 209 93 chr9 101582792 101583180 -22492992 - MT2A LTR ERVL -82 451 19 1 1360 743 119 11 33 chr9 101583271 101583453 -22492719 + (TCTCTG)n Simple_repeat Simple_repeat 1 178 0 1 1360 915 250 12 114 chr9 101583457 101583782 -22492390 - B4A SINE B4 0 292 1 1 1360 241 123 92 39 chr9 101583826 101583912 -22492260 - L1M LINE L1 -822 5357 5266 1 1360 450 286 32 58 chr9 101583962 101584118 -22492054 + MER47B DNA MER2_type 94 245 -173 1 1360 2387 286 82 48 chr9 101584321 101585703 -22490469 - L1MEc LINE L1 -877 5442 4015 1 1360 836 146 49 226 chr9 101585708 101586053 -22490119 - Lx9 LINE L1 -5 7639 7356 1 1360 1262 298 136 32 chr9 101586058 101587346 -22488826 - L1MEc LINE L1 -2303 4010 2579 1 1360 625 300 46 19 chr9 101587363 101587625 -22488547 - L1MEc LINE L1 -5613 787 519 1 1360 277 381 20 7 chr9 101587718 101587866 -22488306 - L1MEc LINE L1 -6077 323 174 1 1360 384 234 101 18 chr9 101587946 101588055 -22488117 - PB1D7 SINE Alu -2 118 1 1 1360 4099 154 145 20 chr9 101588097 101588904 -22487268 - RMER13B LTR ERVK 0 908 1 1 1360 211 259 17 17 chr9 101590430 101590489 -22485683 - L2c LINE L2 0 3375 3317 1 1360 280 340 78 5 chr9 101590647 101590839 -22485333 - L2c LINE L2 -70 3317 3112 1 1360 326 250 114 0 chr9 101590990 101591078 -22485094 - RSINE1 SINE B4 -65 100 3 1 1360 193 295 96 24 chr9 101591130 101591255 -22484917 + MIRc SINE MIR 17 150 -118 1 1360 266 231 62 0 chr9 101594333 101594398 -22481774 - L2a LINE L2 -4 3422 3354 1 1360 437 303 66 12 chr9 101595121 101595288 -22480884 + MIR SINE MIR 36 211 -51 1 1360 487 268 7 40 chr9 101596140 101596288 -22479884 + B4A SINE B4 1 143 -149 1 1360 560 295 18 111 chr9 101596306 101596523 -22479649 + MTD LTR MaLR 21 219 -188 1 1360 894 268 45 48 chr9 101596518 101596808 -22479364 - RMER19B LTR ERVK -288 614 326 1 1360 854 279 91 0 chr9 101597917 101598171 -22478001 + B4A SINE B4 4 280 -12 1 1360 268 321 18 0 chr9 101598185 101598297 -22477875 + (CA)n Simple_repeat Simple_repeat 1 114 0 1 1360 320 351 71 0 chr9 101598329 101598483 -22477689 - L3 LINE CR1 -977 3512 3348 1 1360 390 303 15 15 chr9 101599690 101599753 -22476419 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 1 1360 372 59 0 0 chr9 101599753 101599804 -22476368 + (CATA)n Simple_repeat Simple_repeat 1 51 0 1 1360 390 303 15 15 chr9 101599804 101599874 -22476298 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 1 1360 568 263 74 12 chr9 101600469 101600684 -22475488 + ORR1E LTR MaLR 73 324 -55 1 1360 504 162 0 0 chr9 101601544 101601649 -22474523 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1360 378 61 0 0 chr9 101601649 101601698 -22474474 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1360 313 277 96 26 chr9 101601746 101601861 -22474311 + MLT1F2 LTR MaLR 438 560 0 1 1360 283 309 126 43 chr9 101601867 101602097 -22474075 + L2a LINE L2 3138 3386 -40 1 1360 369 0 0 0 chr9 101602235 101602276 -22473896 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1360 904 271 21 79 chr9 101603070 101603451 -22472721 - ORR1E LTR MaLR 0 359 1 1 1360 380 307 118 73 chr9 101603833 101604146 -22472026 + MLT1A0 LTR MaLR 39 365 0 1 1360 268 212 12 24 chr9 101605167 101605249 -22470923 + C-rich Low_complexity Low_complexity 5 85 0 1 1360 186 43 0 0 chr9 101605278 101605301 -22470871 + (TTCTC)n Simple_repeat Simple_repeat 2 24 0 1 1360 241 280 43 86 chr9 101605313 101605430 -22470742 - PB1D10 SINE Alu -2 115 4 1 1360 399 106 0 0 chr9 101606285 101606351 -22469821 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1360 26 30 0 0 chr9 101606851 101606884 -22469288 + AT_rich Low_complexity Low_complexity 1 33 0 1 1360 227 325 31 86 chr9 101607570 101607698 -22468474 - MIRc SINE MIR -112 156 36 1 1360 231 151 0 122 chr9 101607830 101607928 -22468244 + A-rich Low_complexity Low_complexity 3 88 0 1 1360 437 226 123 0 chr9 101608592 101608698 -22467474 + PB1D7 SINE Alu 1 119 -1 1 1360 493 277 23 0 chr9 101608913 101609043 -22467129 - B1F SINE Alu 0 149 17 1 1360 1319 296 71 36 chr9 101609144 101609827 -22466345 + L1MA9 LINE L1 3594 4434 -1706 1 1360 4771 90 9 14 chr9 101609827 101610481 -22465691 + L1_Mus3 LINE L1 5976 6626 -12 1 1360 433 282 55 73 chr9 101610481 101610702 -22465470 + L1MA9 LINE L1 4435 4664 -1479 1 1360 1327 304 70 43 chr9 101610779 101612252 -22463920 + L1MA9 LINE L1 4793 6310 -2 1 1360 185 320 0 39 chr9 101613774 101613852 -22462320 - MIRb SINE MIR -14 254 180 1 1360 636 302 20 32 chr9 101614022 101614272 -22461900 - B4 SINE B4 -44 248 2 1 1360 1092 195 49 116 chr9 101615316 101615722 -22460450 - MTEb LTR MaLR 0 379 1 1 1360 406 269 107 53 chr9 101615775 101616018 -22460154 + MER44D DNA MER2_type 4 259 -80 1 1360 425 278 125 0 chr9 101617133 101617277 -22458895 + MER5A1 DNA MER1_type 5 166 0 1 1360 265 221 18 128 chr9 101617305 101617414 -22458758 - L2c LINE L2 -9 3378 3282 1 1360 223 317 128 24 chr9 101617386 101617683 -22458489 + L2 LINE L2 1880 2207 -1212 1 1360 489 323 99 45 chr9 101618048 101618382 -22457790 - MLT1D LTR MaLR -146 359 8 1 1360 517 68 0 13 chr9 101619449 101619524 -22456648 + B1_Mur4 SINE Alu 77 150 0 1 1360 408 20 0 0 chr9 101619544 101619593 -22456579 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1360 642 26 0 0 chr9 101620786 101620862 -22455310 + (GA)n Simple_repeat Simple_repeat 2 77 0 1 1360 463 305 95 33 chr9 101621600 101621945 -22454227 - L1M5 LINE L1 -581 5659 5276 1 1360 302 286 50 43 chr9 101621971 101622110 -22454062 - L1MEg LINE L1 -4937 1147 1008 1 1360 360 64 0 0 chr9 101622152 101622199 -22453973 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1360 552 352 68 15 chr9 101622271 101622536 -22453636 - B4A SINE B4 -13 279 1 1 1360 803 290 96 85 chr9 101622541 101623200 -22452972 - L1MEg LINE L1 -5115 969 304 1 1360 678 25 0 0 chr9 101623793 101623873 -22452299 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1360 254 380 0 0 chr9 101623962 101624041 -22452131 + MLT1G3 LTR MaLR 449 527 -68 1 1360 211 336 115 26 chr9 101624836 101625062 -22451110 + L2 LINE L2 2837 3082 -337 1 1360 659 331 118 35 chr9 101625517 101626228 -22449944 + L1ME1 LINE L1 4515 5284 -862 1 1360 371 352 0 0 chr9 101626284 101626392 -22449780 + PB1D10 SINE Alu 2 109 -8 1 1360 640 289 151 38 chr9 101626417 101626512 -22449660 + L1ME1 LINE L1 5378 5483 -696 1 1360 205 51 25 25 chr9 101626512 101626552 -22449620 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1360 640 289 151 38 chr9 101626552 101626959 -22449213 + L1ME1 LINE L1 5484 5937 -242 1 1360 571 266 0 0 chr9 101627083 101627211 -22448961 + B1_Mur1 SINE Alu 2 129 -20 1 1360 584 269 220 46 chr9 101627452 101627775 -22448397 - MTEa LTR MaLR 0 379 1 1 1360 188 301 66 28 chr9 101628061 101628167 -22448005 - MIR SINE MIR -48 214 105 1 1360 189 241 0 0 chr9 101628352 101628406 -22447766 + CT-rich Low_complexity Low_complexity 1 54 0 1 1360 1395 261 57 9 chr9 101628874 101629295 -22446877 - BGLII_B LTR ERVK 0 441 1 1 1360 363 256 148 15 chr9 101630118 101630253 -22445919 - MER5A1 DNA MER1_type -7 159 7 1 1360 995 66 7 0 chr9 101631607 101631743 -22444429 + (GA)n Simple_repeat Simple_repeat 2 138 0 1 1360 585 256 223 15 chr9 101633444 101633717 -22442455 + MLT1D LTR MaLR 176 505 0 1 1360 2100 159 24 13 chr9 101633732 101634114 -22442058 - ORR1B1 LTR MaLR -8 386 1 1 1360 444 113 74 19 chr9 101635145 101635307 -22440865 + (TCTA)n Simple_repeat Simple_repeat 2 172 0 2 1360 234 0 0 0 chr9 101635313 101635339 -22440833 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 2 1360 469 276 9 0 chr9 101635468 101635573 -22440599 + PB1D10 SINE Alu 10 115 -2 2 1360 462 339 0 0 chr9 101635604 101635781 -22440391 + MIR SINE MIR 86 262 0 2 1360 201 108 0 0 chr9 101636505 101636542 -22439630 + (G)n Simple_repeat Simple_repeat 1 37 0 2 1360 351 113 0 0 chr9 101637102 101637155 -22439017 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 1360 195 197 30 90 chr9 101637909 101637976 -22438196 + L3 LINE CR1 4408 4470 -19 2 1360 270 276 92 0 chr9 101638456 101638543 -22437629 - MLT1K LTR MaLR -344 251 157 2 1360 513 0 0 0 chr9 101638559 101638616 -22437556 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1360 264 339 52 30 chr9 101640472 101640606 -22435566 - L2a LINE L2 -1 3425 3289 2 1360 27 29 0 0 chr9 101640818 101640852 -22435320 + AT_rich Low_complexity Low_complexity 1 34 0 2 1360 598 297 0 0 chr9 101640896 101641034 -22435138 - RSINE1 SINE B4 -22 143 6 2 1360 378 171 0 0 chr9 101641382 101641452 -22434720 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1360 250 355 103 21 chr9 101642583 101642816 -22433356 - MLT1B LTR MaLR -10 545 294 2 1360 594 0 0 0 chr9 101644699 101644765 -22431407 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1360 615 172 7 26 chr9 101645751 101645906 -22430266 + (CA)n Simple_repeat Simple_repeat 1 152 0 2 1360 516 273 62 49 chr9 101645970 101646183 -22429989 + RMER13A LTR ERVK 668 860 0 2 1360 416 307 41 20 chr9 101646220 101646429 -22429743 - L1ME1 LINE L1 -452 5907 5695 2 1360 3205 315 38 50 chr9 101646433 101647157 -22429015 + Lx8 LINE L1 6172 6916 -557 2 1360 309 109 0 0 chr9 101647157 101647203 -22428969 + (CAG)n Simple_repeat Simple_repeat 1 46 0 2 1360 3205 315 38 50 chr9 101647203 101647796 -22428376 + Lx8 LINE L1 6917 7473 0 2 1360 342 260 97 58 chr9 101647916 101648071 -22428101 - MLT1B LTR MaLR -223 167 7 2 1360 450 282 266 39 chr9 101648112 101648749 -22427423 - L1MB8 LINE L1 0 6178 5398 2 1360 487 284 149 54 chr9 101648832 101649074 -22427098 - B4A SINE B4 -18 274 10 2 1360 533 296 121 14 chr9 101649086 101649367 -22426805 - L1MB8 LINE L1 -2267 3879 3569 2 1360 243 88 0 0 chr9 101649465 101649499 -22426673 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1360 626 271 7 0 chr9 101649504 101649644 -22426528 - RSINE1 SINE B4 -22 143 3 2 1360 934 254 102 47 chr9 101649644 101650243 -22425929 - L1MB8 LINE L1 -2657 3489 2858 2 1360 281 296 18 2 chr9 101650269 101650353 -22425819 - PB1D10 SINE Alu -8 112 27 2 1360 372 283 75 0 chr9 101650447 101650553 -22425619 - B1F SINE Alu -4 145 32 2 1360 327 280 101 14 chr9 101650590 101650887 -22425285 - L1MB8 LINE L1 -3383 2763 2441 2 1360 237 330 0 42 chr9 101651057 101651177 -22424995 - L1M5 LINE L1 -2413 3733 3619 2 1360 560 324 73 37 chr9 101651215 101651487 -22424685 - B4A SINE B4 -10 282 1 2 1360 22 35 0 0 chr9 101651536 101651565 -22424607 + AT_rich Low_complexity Low_complexity 1 29 0 2 1360 2337 311 98 9 chr9 101651614 101652599 -22423573 - Lx8 LINE L1 -27 7446 6375 2 1360 670 312 113 23 chr9 101652885 101653318 -22422854 - L1MB8 LINE L1 -5644 492 21 2 1360 306 328 101 90 chr9 101653924 101654279 -22421893 + ORR1E LTR MaLR 1 359 0 2 1360 1253 270 22 77 chr9 101654608 101655009 -22421163 - MTE2b LTR MaLR 0 379 1 2 1360 729 214 0 7 chr9 101655374 101655520 -22420652 - RLTR19C LTR ERVK 0 715 571 2 1360 37600 64 6 7 chr9 101655530 101661912 -22414260 - L1Md_F2 LINE L1 -3 6579 208 2 1360 1741 176 38 8 chr9 101661914 101662280 -22413892 - RLTR19C LTR ERVK -129 377 1 2 1360 265 150 81 32 chr9 101662280 101662342 -22413830 - RLTR19-int LTR ERVK 0 6137 6073 2 1360 5947 151 27 30 chr9 101662439 101663618 -22412554 - RLTR19-int LTR ERVK -1756 4381 3079 2 1360 9055 133 60 21 chr9 101663627 101665205 -22410967 - RLTR19-int LTR ERVK -4498 1639 1 2 1360 504 134 0 0 chr9 101665205 101665287 -22410885 - RLTR19C LTR ERVK 0 715 634 2 1360 452 236 0 0 chr9 101665286 101665392 -22410780 + RLTR19C LTR ERVK 401 506 0 2 1360 467 300 18 0 chr9 101665413 101665523 -22410649 + RSINE1 SINE B4 26 137 -28 2 1360 556 170 9 19 chr9 101665698 101665806 -22410366 - PB1D9 SINE Alu -2 118 12 2 1360 623 288 12 0 chr9 101666007 101666167 -22410005 - B3A SINE B2 -36 162 1 2 1360 1548 178 65 18 chr9 101666219 101666402 -22409770 - RMER17C LTR ERVK 0 410 224 2 1360 508 14 29 0 chr9 101666402 101666471 -22409701 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1360 1548 178 65 18 chr9 101666471 101666670 -22409502 - RMER17C LTR ERVK -187 223 10 2 1360 1653 330 60 20 chr9 101666674 101666758 -22409414 - FordPrefect DNA Tip100 -172 1511 1429 2 1360 396 0 0 0 chr9 101666758 101666802 -22409370 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 1360 1653 333 112 17 chr9 101666802 101667850 -22408322 - FordPrefect DNA Tip100 -255 1428 276 2 1360 435 38 0 0 chr9 101668107 101668160 -22408012 + (TAG)n Simple_repeat Simple_repeat 3 55 0 2 1360 559 294 94 79 chr9 101669208 101669537 -22406635 - ORR1E LTR MaLR -7 352 19 2 1360 2351 318 46 42 chr9 101669531 101670587 -22405585 - ORR1E-int LTR MaLR -36 1544 484 2 1360 417 54 0 0 chr9 101670815 101670871 -22405301 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1360 369 0 0 0 chr9 101670871 101670912 -22405260 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1360 436 279 73 34 chr9 101670965 101671067 -22405105 + RMER15 LTR ERVL 351 453 -122 2 1360 267 31 0 0 chr9 101671067 101671099 -22405073 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1360 436 279 73 34 chr9 101671099 101671200 -22404972 + RMER15 LTR ERVL 454 561 -14 2 1360 513 325 150 7 chr9 101671201 101671474 -22404698 - ORR1E-int LTR MaLR -1267 313 2 2 1360 758 273 45 139 chr9 101671473 101671851 -22404321 - ORR1E LTR MaLR 0 379 1 2 1360 216 0 0 0 chr9 101672314 101672338 -22403834 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1360 339 85 0 0 chr9 101672338 101672384 -22403788 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1360 566 292 148 19 chr9 101673080 101673398 -22402774 + MER63C DNA AcHobo 54 412 -518 2 1360 870 184 42 0 chr9 101673411 101673601 -22402571 + URR1A DNA MER1_type 29 226 0 2 1360 296 255 62 18 chr9 101673601 101673713 -22402459 + MER63C DNA AcHobo 406 522 -408 2 1360 1573 208 52 63 chr9 101673713 101674327 -22401845 + RLTR18B LTR ERVK 3 558 -58 2 1360 1465 257 30 3 chr9 101674342 101674705 -22401467 + MTE2b LTR MaLR 3 375 -4 2 1360 676 307 68 25 chr9 101674720 101675044 -22401128 + MER63C DNA AcHobo 537 874 -56 2 1360 246 340 64 44 chr9 101675131 101675475 -22400697 - L2 LINE L2 -493 2926 2576 2 1360 36 70 0 0 chr9 101675502 101675573 -22400599 + AT_rich Low_complexity Low_complexity 1 71 0 2 1360 245 312 35 26 chr9 101675663 101675778 -22400394 - PB1D10 SINE Alu -1 116 1 2 1360 413 240 40 24 chr9 101675781 101675905 -22400267 - L1MA6 LINE L1 -121 6179 6054 2 1360 397 323 123 51 chr9 101675908 101676241 -22399931 - ORR1E LTR MaLR 0 359 3 2 1360 886 267 27 27 chr9 101676244 101676540 -22399632 - L1MA6 LINE L1 -244 6056 5761 2 1360 242 220 17 17 chr9 101676543 101676603 -22399569 + L1M3 LINE L1 5689 5748 -441 2 1360 422 329 37 20 chr9 101677171 101677469 -22398703 - L1M5 LINE L1 -1586 4560 4258 2 1360 1427 285 104 27 chr9 101677729 101677792 -22398380 + Lx8 LINE L1 6874 6948 -525 2 1360 2055 108 183 3 chr9 101677792 101678126 -22398046 - ORR1B1 LTR MaLR 0 394 1 2 1360 1427 285 104 27 chr9 101678126 101678617 -22397555 + Lx8 LINE L1 6949 7470 -3 2 1360 24 0 0 0 chr9 101679335 101679359 -22396813 + AT_rich Low_complexity Low_complexity 1 24 0 2 1360 21 0 0 0 chr9 101679393 101679414 -22396758 + AT_rich Low_complexity Low_complexity 1 21 0 2 1360 630 282 35 6 chr9 101679417 101679588 -22396584 - B3A SINE B2 -22 176 1 2 1360 3918 286 46 25 chr9 101679983 101680557 -22395615 - Lx8 LINE L1 -7 7466 6867 2 1360 5869 32 4 3 chr9 101680557 101681246 -22394926 - L1Md_T LINE L1 0 6582 5893 2 1360 3918 286 46 25 chr9 101681246 101681931 -22394241 - Lx8 LINE L1 -607 6866 6182 2 1360 635 291 45 41 chr9 101682593 101682797 -22393375 - B4A SINE B4 -10 282 13 2 1360 237 221 0 93 chr9 101682797 101682862 -22393310 - ID2 SINE ID -8 75 14 2 1360 2537 28 128 15 chr9 101682862 101683190 -22392982 - RLTR10B2 LTR ERVK 0 365 1 2 1360 241 305 61 6 chr9 101683465 101683630 -22392542 - L1M6 LINE L1 -4496 2000 1827 2 1360 2888 58 0 6 chr9 101683872 101684236 -22391936 - L1_Mus2 LINE L1 -1 6565 6204 2 1360 36819 66 5 2 chr9 101684241 101690388 -22385784 - L1Md_F3 LINE L1 0 6584 462 2 1360 4828 75 4 0 chr9 101690402 101691326 -22384846 - L1_Mus2 LINE L1 -371 6195 5267 2 1360 1525 89 33 0 chr9 101691329 101691542 -22384630 + L1_Mus2 LINE L1 5021 5240 -643 2 1360 429 242 0 102 chr9 101691556 101691703 -22384469 - ID_B1 SINE B4 -12 212 81 2 1360 288 70 0 0 chr9 101691854 101691897 -22384275 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 2 1360 345 62 0 0 chr9 101692113 101692161 -22384011 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1360 359 265 34 149 chr9 101692620 101692882 -22383290 - Lx7 LINE L1 -1800 5896 5631 2 1360 1230 54 0 0 chr9 101692944 101693091 -22383081 - B1_Mus2 SINE Alu 0 147 1 2 1360 578 234 120 40 chr9 101693134 101693334 -22382838 + B3 SINE B2 1 216 0 2 1360 689 286 75 64 chr9 101695316 101695596 -22380576 - B4A SINE B4 -1 291 9 2 1360 683 229 126 186 chr9 101695844 101696440 -22379732 + RMER4B LTR ERVK 17 576 -9 2 1360 253 246 0 50 chr9 101697703 101697763 -22378409 + L2a LINE L2 3345 3401 -25 2 1360 297 75 0 0 chr9 101697772 101697812 -22378360 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2 1360 352 345 20 40 chr9 101698690 101698841 -22377331 + RSINE1 SINE B4 3 150 -15 2 1360 447 19 0 0 chr9 101698851 101698903 -22377269 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1360 236 30 30 0 chr9 101698903 101698935 -22377237 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1360 26 30 0 0 chr9 101698965 101698998 -22377174 + AT_rich Low_complexity Low_complexity 1 33 0 2 1360 295 307 96 25 chr9 101699875 101700032 -22376140 + L1MA6 LINE L1 5994 6161 -139 2 1360 249 313 35 35 chr9 101700476 101700648 -22375524 - L1MEc LINE L1 -4803 1597 1426 2 1360 448 277 130 57 chr9 101701071 101701553 -22374619 - L1MC4 LINE L1 -3664 2551 2032 2 1360 216 0 0 0 chr9 101701553 101701577 -22374595 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1360 387 0 0 0 chr9 101701577 101701619 -22374553 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1360 240 100 0 48 chr9 101701654 101701696 -22374476 + ORR1A4 LTR MaLR 1 40 -289 2 1360 4640 185 11 15 chr9 101701698 101703055 -22373117 + Lx5 LINE L1 5587 7029 -21 2 1360 183 80 0 0 chr9 101703055 101703080 -22373092 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 2 1360 360 64 0 0 chr9 101703093 101703140 -22373032 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1360 1144 144 119 0 chr9 101703197 101703399 -22372773 - URR1A DNA MER1_type 0 226 1 2 1360 437 253 83 61 chr9 101703563 101703841 -22372331 + L1ME3B LINE L1 5644 5927 -252 2 1360 692 235 141 5 chr9 101704089 101704273 -22371899 - B3 SINE B2 -6 210 2 3 1360 539 259 153 102 chr9 101704726 101705040 -22371132 + MTE2a LTR MaLR 6 335 -44 3 1360 702 163 200 24 chr9 101705037 101705207 -22370965 - MTD LTR MaLR -14 405 206 3 1360 247 305 140 19 chr9 101705223 101705330 -22370842 - MTD LTR MaLR -280 139 20 3 1360 438 20 0 0 chr9 101705643 101705694 -22370478 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1360 339 44 0 0 chr9 101705694 101705738 -22370434 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1360 240 188 0 0 chr9 101706003 101706067 -22370105 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1360 272 217 2 0 chr9 101706195 101706261 -22369911 + ORR1A2 LTR MaLR 1 67 -279 3 1360 8096 58 4 0 chr9 101706432 101707475 -22368697 + L1_Mus1 LINE L1 5521 6567 0 3 1360 660 314 8 51 chr9 101707498 101707687 -22368485 + B4A SINE B4 68 254 -38 3 1360 558 0 0 0 chr9 101707687 101707749 -22368423 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 3 1360 660 314 8 51 chr9 101707749 101707794 -22368378 + B4A SINE B4 255 291 -1 3 1360 387 127 0 0 chr9 101708445 101708508 -22367664 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1360 270 143 0 0 chr9 101710153 101710216 -22365956 + (T)n Simple_repeat Simple_repeat 1 63 0 3 1361 531 303 12 35 chr9 101712490 101712661 -22363511 - ORR1E LTR MaLR -184 175 9 3 1361 2420 319 88 47 chr9 101712643 101712952 -22363220 - ORR1E-int LTR MaLR -27 1553 1262 3 1361 868 43 17 0 chr9 101712952 101713069 -22363103 + (GAA)n Simple_repeat Simple_repeat 2 120 0 3 1361 2420 319 88 47 chr9 101713069 101713990 -22362182 - ORR1E-int LTR MaLR -319 1261 273 3 1361 1629 167 39 3 chr9 101713990 101714297 -22361875 + ORR1C1 LTR MaLR 1 318 -60 3 1361 536 305 36 89 chr9 101714297 101714545 -22361627 - ORR1E-int LTR MaLR -1337 243 9 3 1361 742 287 44 69 chr9 101714555 101714918 -22361254 - ORR1E LTR MaLR 0 359 6 3 1361 1383 78 16 10 chr9 101715444 101715637 -22360535 - B2_Mm2 SINE B2 0 195 2 3 1361 1269 251 66 0 chr9 101715729 101716076 -22360096 + L1MC4 LINE L1 7180 7549 -493 3 1361 968 251 66 24 chr9 101717850 101718185 -22357987 - L1ME5 LINE L1 -52 6142 5794 3 1361 2025 116 0 9 chr9 101720180 101720501 -22355671 - ORR1A3 LTR MaLR -8 318 1 3 1361 347 139 28 0 chr9 101723783 101723855 -22352317 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 3 1361 330 26 0 0 chr9 101725981 101726020 -22350152 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1361 215 283 53 21 chr9 101726729 101726823 -22349349 - MIRc SINE MIR -152 116 20 3 1361 252 0 0 0 chr9 101727264 101727292 -22348880 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1361 378 0 0 0 chr9 101728854 101728896 -22347276 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1361 372 22 0 0 chr9 101728897 101728942 -22347230 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1361 263 347 0 0 chr9 101729145 101729220 -22346952 - ID4_ SINE ID -8 75 1 3 1361 668 289 68 78 chr9 101729245 101729538 -22346634 + B4A SINE B4 2 291 -1 3 1361 209 330 0 11 chr9 101729545 101729634 -22346538 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1361 258 354 46 0 chr9 101729789 101729919 -22346253 + L2a LINE L2 2957 3092 -334 3 1361 190 257 70 14 chr9 101733739 101733810 -22342362 - MIR SINE MIR -148 114 40 3 1361 318 174 33 0 chr9 101734362 101734434 -22341738 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1361 261 0 0 0 chr9 101734434 101734463 -22341709 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1361 318 174 33 0 chr9 101734463 101734482 -22341690 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1361 237 65 0 0 chr9 101734500 101734531 -22341641 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1361 190 341 39 16 chr9 101735028 101735156 -22341016 + MIR SINE MIR 132 262 0 3 1361 261 322 59 8 chr9 101735546 101735665 -22340507 + MIR SINE MIR 88 212 -50 3 1361 1041 258 43 25 chr9 101736520 101736802 -22339370 + B4 SINE B4 2 288 -4 3 1361 486 0 0 0 chr9 101736845 101736899 -22339273 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1361 1198 284 125 36 chr9 101738853 101739626 -22336546 - L1ME1 LINE L1 -107 6072 5196 3 1361 716 272 20 112 chr9 101739696 101739788 -22336384 + L1MA4 LINE L1 5580 5670 -630 3 1361 1395 199 181 16 chr9 101739788 101740109 -22336063 + ORR1D1 LTR MaLR 1 374 0 3 1361 716 272 20 112 chr9 101740109 101740409 -22335763 + L1MA4 LINE L1 5671 5936 -364 3 1361 263 294 15 0 chr9 101740512 101740580 -22335592 - B4 SINE B4 -222 70 2 3 1361 260 329 56 21 chr9 101740582 101740725 -22335447 - L1ME1 LINE L1 -1143 5003 4856 3 1361 719 197 29 0 chr9 101740811 101740948 -22335224 - B1_Mm SINE Alu -4 143 3 3 1361 255 182 73 0 chr9 101740954 101741009 -22335163 - L1MD LINE L1 -1317 4829 4771 3 1361 303 307 120 28 chr9 101741136 101741495 -22334677 - L1ME1 LINE L1 -1486 4660 4269 3 1361 436 94 0 0 chr9 101741521 101741585 -22334587 - B1_Mus2 SINE Alu 0 147 84 3 1361 239 260 83 95 chr9 101741596 101741838 -22334334 - L1M3 LINE L1 -1888 4252 4014 3 1361 480 307 90 44 chr9 101742034 101742446 -22333726 - L1ME1 LINE L1 -2673 3473 3043 3 1361 476 347 6 6 chr9 101743258 101743432 -22332740 + MER45A DNA Tip100 5 178 0 3 1361 429 97 0 0 chr9 101744272 101744344 -22331828 + (T)n Simple_repeat Simple_repeat 1 72 0 3 1361 5343 28 40 3 chr9 101744661 101745309 -22330863 - L1Md_F3 LINE L1 -1 6583 5912 3 1361 303 244 236 0 chr9 101746924 101747047 -22329125 - MER5A DNA MER1_type -34 155 4 3 1361 23 0 0 0 chr9 101747795 101747818 -22328354 + AT_rich Low_complexity Low_complexity 1 23 0 3 1361 268 211 40 100 chr9 101748183 101748283 -22327889 + MLT1J1 LTR MaLR 33 126 -318 3 1361 180 279 34 90 chr9 101749023 101749200 -22326972 + L2a LINE L2 3223 3389 -37 3 1361 315 289 120 53 chr9 101749346 101749554 -22326618 - L1MD2 LINE L1 -16 6343 6122 3 1361 615 258 20 7 chr9 101749869 101750021 -22326151 + B3A SINE B2 29 182 -16 3 1361 245 258 0 16 chr9 101750021 101750084 -22326088 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1361 2207 299 86 39 chr9 101750146 101752001 -22324171 - L1MB5 LINE L1 -23 6542 4624 3 1361 296 24 0 24 chr9 101752001 101752043 -22324129 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1361 2207 293 104 48 chr9 101752043 101752397 -22323775 - L1MB5 LINE L1 -1914 4623 4232 3 1361 370 223 72 14 chr9 101752483 101752639 -22323533 - MLT1D LTR MaLR -10 495 302 3 1361 529 319 139 9 chr9 101752905 101753220 -22322952 - RMER15 LTR ERVL 0 575 220 3 1361 540 333 81 38 chr9 101753411 101754013 -22322159 - L1MB5 LINE L1 -4451 2182 1555 3 1361 808 358 68 18 chr9 101754252 101754874 -22321298 - L1MB5 LINE L1 -5761 779 151 3 1361 567 29 0 0 chr9 101755523 101755592 -22320580 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1361 477 80 0 0 chr9 101755592 101755666 -22320506 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1361 431 350 100 6 chr9 101756009 101756348 -22319824 + Charlie7 DNA MER1_type 314 684 -1928 3 1361 414 0 0 0 chr9 101757079 101757125 -22319047 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1361 274 230 0 0 chr9 101757128 101757202 -22318970 + GA-rich Low_complexity Low_complexity 2 75 0 3 1361 589 268 81 92 chr9 101757229 101757513 -22318659 - B4A SINE B4 0 292 12 3 1361 277 350 29 7 chr9 101759172 101759310 -22316862 - B1F1 SINE Alu -8 141 1 3 1361 421 310 68 28 chr9 101759538 101759790 -22316382 + HAL1 LINE L1 463 724 -1783 3 1361 811 289 122 68 chr9 101760734 101761154 -22315018 + L1MA10 LINE L1 5657 6112 -222 3 1361 1126 90 7 0 chr9 101761154 101761299 -22314873 + B1_Mus2 SINE Alu 1 146 -1 3 1361 811 289 122 68 chr9 101761299 101761468 -22314704 + L1MA10 LINE L1 6113 6278 -56 3 1361 1306 177 104 12 chr9 101761551 101761877 -22314295 - Lx9 LINE L1 -4 7640 7285 3 1361 409 174 22 34 chr9 101761886 101761975 -22314197 + Lx9 LINE L1 7094 7181 -463 3 1361 831 261 11 0 chr9 101761982 101762166 -22314006 - B3A SINE B2 -8 190 5 3 1361 557 306 115 20 chr9 101762663 101762916 -22313256 + RMER15 LTR ERVL 287 563 -12 3 1361 692 317 86 30 chr9 101763310 101763681 -22312491 + L2 LINE L2 2472 2863 -556 3 1361 200 270 76 55 chr9 101763912 101764057 -22312115 - L2c LINE L2 -219 3168 3021 3 1361 581 243 13 34 chr9 101765741 101765890 -22310282 + B1F SINE Alu 3 148 -1 3 1361 787 307 12 103 chr9 101765897 101766217 -22309955 + B4 SINE B4 2 292 0 3 1361 582 15 0 0 chr9 101766260 101766327 -22309845 + (TTC)n Simple_repeat Simple_repeat 2 68 0 3 1361 396 0 0 0 chr9 101766428 101766472 -22309700 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1361 562 220 43 12 chr9 101766999 101767160 -22309012 - MIRc SINE MIR -19 249 84 3 1361 218 381 72 24 chr9 101768063 101768270 -22307902 - L2 LINE L2 -428 2991 2775 3 1361 243 275 50 0 chr9 101769027 101769107 -22307065 + MIRc SINE MIR 2 85 -183 3 1361 292 243 14 0 chr9 101769500 101769570 -22306602 - PB1D10 SINE Alu -6 111 41 3 1361 300 336 105 26 chr9 101770232 101770385 -22305787 - MLT1K LTR MaLR -409 186 22 3 1361 1045 340 100 22 chr9 101771474 101772193 -22303979 + ERVL-B4-int LTR ERVL 1850 2624 -3090 3 1361 815 295 129 19 chr9 101772394 101772719 -22303453 + RCHARR1 DNA MER1_type 35 395 -579 3 1361 651 227 0 0 chr9 101772770 101772924 -22303248 + (TA)n Simple_repeat Simple_repeat 1 154 0 3 1361 1246 99 16 11 chr9 101773362 101773546 -22302626 + B2_Mm1t SINE B2 1 185 -8 3 1361 1134 78 0 0 chr9 101773547 101773688 -22302484 + B1_Mus1 SINE Alu 2 142 -6 3 1361 201 39 0 0 chr9 101773692 101773718 -22302454 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3 1361 1055 302 83 16 chr9 101774354 101774802 -22301370 - L1ME3A LINE L1 -4 6169 5692 3 1361 2428 237 83 9 chr9 101774824 101775443 -22300729 - Lx6 LINE L1 -11 7449 6754 3 1361 1889 271 35 14 chr9 101775458 101775939 -22300233 - Lx6 LINE L1 -762 6698 6221 3 1361 5451 150 21 3 chr9 101775946 101776928 -22299244 - Lx6 LINE L1 -1492 5968 4968 3 1361 1389 219 103 47 chr9 101777010 101777397 -22298775 + MTD LTR MaLR 11 419 0 3 1361 267 330 20 30 chr9 101778180 101778280 -22297892 - L2c LINE L2 -40 3347 3249 3 1361 243 246 45 15 chr9 101779652 101779718 -22296454 + MLT1N2 LTR MaLR 495 562 0 3 1361 213 39 0 0 chr9 101780787 101780813 -22295359 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1361 438 20 0 0 chr9 101781331 101781382 -22294790 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1361 279 0 0 0 chr9 101781382 101781412 -22294760 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1361 356 336 14 27 chr9 101783635 101783782 -22292390 + MIRb SINE MIR 113 257 -11 3 1361 245 348 17 25 chr9 101785071 101785189 -22290983 + MER21B LTR ERV1 636 752 -111 3 1361 430 244 34 0 chr9 101786512 101786631 -22289541 + MER5A1 DNA MER1_type 14 136 -30 3 1361 364 346 93 64 chr9 101786693 101787036 -22289136 + ORR1E LTR MaLR 1 353 -6 4 1361 489 34 0 0 chr9 101787036 101787095 -22289077 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1361 360 0 0 0 chr9 101787095 101787134 -22289038 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1361 253 327 45 7 chr9 101787996 101788150 -22288022 - L3 LINE CR1 -630 3859 3700 4 1361 663 294 108 16 chr9 101789004 101789429 -22286743 + MLT1C LTR MaLR 3 466 -1 4 1361 791 254 80 0 chr9 101790071 101790106 -22286066 + ID SINE ID 5 41 -183 4 1361 414 0 0 0 chr9 101790106 101790152 -22286020 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1361 791 254 80 0 chr9 101790152 101790317 -22285855 + ID_B1 SINE B4 42 220 -4 4 1361 2676 64 3 0 chr9 101790704 101791030 -22285142 + ORR1A2 LTR MaLR 1 327 0 4 1361 1921 210 40 0 chr9 101792838 101793234 -22282938 - MTD LTR MaLR -7 412 1 4 1361 273 278 33 0 chr9 101793393 101793483 -22282689 - L1MC LINE L1 -2430 5452 5360 4 1361 2545 290 140 57 chr9 101793640 101794714 -22281458 - L1MC3 LINE L1 -8 7777 6654 4 1361 405 0 0 0 chr9 101794714 101794759 -22281413 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1361 2545 290 140 57 chr9 101794759 101795762 -22280410 - L1MC3 LINE L1 -1132 6653 5529 4 1361 1108 339 48 50 chr9 101795754 101796313 -22279859 + Lx8 LINE L1 6916 7473 0 4 1361 23 0 0 0 chr9 101796317 101796340 -22279832 + AT_rich Low_complexity Low_complexity 1 23 0 4 1361 559 274 138 65 chr9 101796493 101797028 -22279144 - L1MC3 LINE L1 -749 5397 4824 4 1361 519 250 25 12 chr9 101797716 101797878 -22278294 + L1ME3A LINE L1 2309 2472 -3928 4 1361 232 208 27 14 chr9 101798078 101798151 -22278021 + L1ME3A LINE L1 2730 2803 -3516 4 1361 428 173 14 41 chr9 101798341 101798486 -22277686 + GA-rich Low_complexity Low_complexity 1 141 0 4 1361 575 288 213 27 chr9 101798486 101799112 -22277060 + L1ME3A LINE L1 4312 5061 -1258 4 1361 6168 60 33 6 chr9 101799112 101799899 -22276273 - RLTR13C2 LTR ERVK 0 808 1 4 1361 575 287 216 28 chr9 101799899 101799955 -22276217 + L1ME3A LINE L1 5062 5118 -1201 4 1361 1042 300 148 8 chr9 101800391 101800891 -22275281 - L1M3 LINE L1 -1113 5027 4458 4 1361 980 70 64 0 chr9 101800892 101801048 -22275124 + B2_Mm2 SINE B2 15 180 -15 4 1361 576 223 430 22 chr9 101801142 101801457 -22274715 - Lx8 LINE L1 -800 6673 6231 4 1361 881 24 79 0 chr9 101801487 101801652 -22274520 + (GA)n Simple_repeat Simple_repeat 1 178 0 4 1361 288 40 19 39 chr9 101801652 101801704 -22274468 + (GAGAA)n Simple_repeat Simple_repeat 5 55 0 4 1361 235 250 63 63 chr9 101801721 101801832 -22274340 - Lx8 LINE L1 -1314 6159 6049 4 1361 1131 336 62 91 chr9 101801927 101802919 -22273253 + HERVL40-int LTR ERVL 23 985 -4545 4 1361 255 341 15 15 chr9 101803227 101803361 -22272811 + HERVL40-int LTR ERVL 1389 1522 -4008 4 1361 326 297 11 32 chr9 101803382 101803476 -22272696 - Tigger7 DNA MER2_type -23 2468 2377 4 1361 527 314 21 27 chr9 101803486 101803765 -22272407 - L1M2 LINE L1 -772 5374 5076 4 1361 617 312 116 7 chr9 101804332 101804635 -22271537 - L1M2 LINE L1 -1070 5073 4738 4 1361 1049 259 29 11 chr9 101804813 101805094 -22271078 + Lx6 LINE L1 7171 7456 -4 4 1361 633 292 52 66 chr9 101805453 101805834 -22270338 + L1ME3A LINE L1 5735 6110 -236 4 1361 267 339 8 0 chr9 101805890 101806008 -22270164 + L1ME3A LINE L1 6218 6336 -10 4 1361 27 29 0 0 chr9 101806430 101806464 -22269708 + AT_rich Low_complexity Low_complexity 1 34 0 4 1361 555 209 157 0 chr9 101806479 101806594 -22269578 + B1_Mur1 SINE Alu 10 142 -7 4 1361 261 139 0 0 chr9 101806598 101806641 -22269531 + (TGG)n Simple_repeat Simple_repeat 1 43 0 4 1361 608 239 20 80 chr9 101806801 101807001 -22269171 + B3A SINE B2 6 193 -5 4 1361 360 0 0 0 chr9 101807441 101807481 -22268691 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1361 2413 141 58 5 chr9 101808757 101809155 -22267017 + MTC LTR MaLR 3 421 0 4 1361 423 286 0 0 chr9 101809582 101809687 -22266485 - PB1D10 SINE Alu -10 107 3 4 1361 561 30 0 0 chr9 101809909 101809976 -22266196 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1361 234 0 0 0 chr9 101810025 101810051 -22266121 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1361 465 280 47 16 chr9 101812218 101812345 -22263827 - ID_B1 SINE B4 -10 214 84 4 1361 1679 175 102 32 chr9 101812379 101812722 -22263450 + ORR1B2 LTR MaLR 1 367 0 4 1361 542 297 75 47 chr9 101813290 101813502 -22262670 + MER58A DNA MER1_type 7 224 0 4 1361 269 68 23 0 chr9 101813765 101813809 -22262363 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1361 184 59 59 0 chr9 101814982 101815016 -22261156 + (TTTTTA)n Simple_repeat Simple_repeat 2 37 0 4 1361 404 207 25 99 chr9 101816416 101816577 -22259595 - Lx5 LINE L1 0 7050 6902 4 1361 1416 150 5 0 chr9 101816580 101816793 -22259379 + Lx5 LINE L1 6195 6408 -642 4 1361 180 0 0 0 chr9 101817731 101817751 -22258421 + (CAG)n Simple_repeat Simple_repeat 1 20 0 4 1361 438 228 29 29 chr9 101818295 101818399 -22257773 - B1F1 SINE Alu -5 112 9 4 1361 319 258 217 8 chr9 101818399 101818420 -22257752 - ID_B1 SINE B4 -1 219 68 4 1361 328 265 186 0 chr9 101818427 101818529 -22257643 - ID_B1 SINE B4 -19 205 85 4 1361 583 306 9 50 chr9 101819948 101820119 -22256053 + ID_B1 SINE B4 2 168 -56 4 1361 1371 95 0 31 chr9 101820119 101820315 -22255857 + B2_Mm2 SINE B2 1 190 -5 4 1361 583 306 9 50 chr9 101820315 101820363 -22255809 + ID_B1 SINE B4 169 212 -12 4 1361 1238 241 109 30 chr9 101822029 101822367 -22253805 + Lx8 LINE L1 7088 7452 -21 4 1361 419 246 168 8 chr9 101822832 101822963 -22253209 + MER5A DNA MER1_type 7 158 -31 4 1361 1254 225 29 108 chr9 101823835 101824243 -22251929 + MTE2a LTR MaLR 4 379 0 4 1361 743 309 11 92 chr9 101826159 101826441 -22249731 - B4 SINE B4 -4 288 30 4 1361 207 87 0 98 chr9 101828248 101828299 -22247873 + A-rich Low_complexity Low_complexity 2 47 0 4 1361 183 308 0 0 chr9 101828299 101828351 -22247821 + L2a LINE L2 3362 3413 -13 4 1361 667 237 89 11 chr9 101828675 101828854 -22247318 - ID_B1 SINE B4 -27 197 5 4 1361 426 248 8 17 chr9 101829111 101829230 -22246942 + MER103 DNA DNA 48 165 -1 4 1361 495 0 0 0 chr9 101831951 101832006 -22244166 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1361 441 0 0 0 chr9 101832006 101832054 -22244118 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1361 850 132 0 0 chr9 101832091 101832220 -22243952 - B2_Mm2 SINE B2 -66 129 1 4 1361 519 17 0 0 chr9 101832512 101832572 -22243600 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1361 895 284 70 55 chr9 101834487 101834840 -22241332 - ORR1E LTR MaLR 0 379 1 4 1361 366 284 94 64 chr9 101834856 101835089 -22241083 + ORR1E LTR MaLR 19 258 -101 4 1361 1101 95 0 0 chr9 101835459 101835606 -22240566 + B1_Mus1 SINE Alu 2 148 0 4 1361 464 111 0 53 chr9 101835884 101835960 -22240212 + B1_Mur3 SINE Alu 70 141 -8 4 1361 218 283 103 9 chr9 101838185 101838292 -22237880 - MIRb SINE MIR -109 159 43 4 1361 190 0 67 0 chr9 101839436 101839466 -22236706 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 4 1361 1059 241 48 4 chr9 101840919 101841148 -22235024 + B4 SINE B4 2 240 -52 4 1361 510 17 0 0 chr9 101841195 101841254 -22234918 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1361 219 69 0 0 chr9 101841806 101841835 -22234337 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1361 391 283 77 32 chr9 101842360 101842586 -22233586 - ORR1D2 LTR MaLR 0 370 103 4 1361 214 321 23 58 chr9 101842588 101842674 -22233498 - L2c LINE L2 -12 3375 3293 4 1362 269 164 36 18 chr9 101843483 101843539 -22232633 + MLT1B LTR MaLR 288 344 -46 4 1362 1377 255 76 18 chr9 101843545 101843928 -22232244 + Lx6 LINE L1 7023 7427 -33 4 1362 414 0 0 0 chr9 101846311 101846357 -22229815 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 4 1362 387 0 0 0 chr9 101846832 101846875 -22229297 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1362 1032 184 13 43 chr9 101847005 101847238 -22228934 + URR1A DNA MER1_type 1 226 0 4 1362 273 29 0 0 chr9 101847317 101847351 -22228821 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4 1362 311 221 60 50 chr9 101847681 101847781 -22228391 + MIRb SINE MIR 103 203 -65 4 1362 221 242 0 0 chr9 101848990 101849052 -22227120 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 4 1362 632 295 90 57 chr9 101849065 101849522 -22226650 + L1MC4 LINE L1 7177 7648 -394 4 1362 240 305 55 78 chr9 101850214 101850291 -22225881 + LTR32 LTR ERVL 265 338 -133 4 1362 508 355 117 25 chr9 101850291 101850617 -22225555 - Tigger9a DNA Tigger -1 731 376 4 1362 419 290 47 27 chr9 101850697 101850846 -22225326 - Tigger9a DNA Tigger -467 265 114 4 1362 254 325 114 24 chr9 101851007 101851130 -22225042 - MIRc SINE MIR -112 164 31 4 1362 287 312 96 50 chr9 101851320 101851539 -22224633 - MIRc SINE MIR -17 251 23 4 1362 369 0 0 0 chr9 101853251 101853292 -22222880 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1362 4864 57 0 0 chr9 101853305 101854092 -22222080 - L1Md_F2 LINE L1 -401 6181 5395 4 1362 3262 97 0 2 chr9 101854092 101854526 -22221646 + L1_Mus1 LINE L1 6135 6567 0 4 1362 930 245 70 116 chr9 101854566 101854963 -22221209 + MTE2a LTR MaLR 1 379 0 4 1362 513 286 8 17 chr9 101855104 101855251 -22220921 - MLT1C LTR MaLR -2 465 246 4 1362 192 209 53 107 chr9 101855760 101855835 -22220337 - L3 LINE CR1 -3458 1031 961 4 1362 22 56 0 0 chr9 101856431 101856467 -22219705 + AT_rich Low_complexity Low_complexity 1 36 0 4 1362 745 296 127 8 chr9 101856540 101856799 -22219373 - B4 SINE B4 -2 290 1 4 1362 347 271 35 78 chr9 101857615 101857731 -22218441 - ID_B1 SINE B4 -23 201 91 4 1362 268 266 13 168 chr9 101857622 101857771 -22218401 - MT2B LTR ERVL -337 264 139 4 1362 362 301 140 0 chr9 101858001 101858144 -22218028 - RSINE1 SINE B4 0 165 3 4 1362 279 0 0 0 chr9 101858249 101858280 -22217892 + (CTG)n Simple_repeat Simple_repeat 1 31 0 4 1362 564 15 0 0 chr9 101858280 101858345 -22217827 + (CCTG)n Simple_repeat Simple_repeat 3 67 0 4 1362 273 293 0 24 chr9 101860044 101860128 -22216044 + GA-rich Low_complexity Low_complexity 1 82 0 4 1362 392 374 19 6 chr9 101860577 101860733 -22215439 + L1MEf LINE L1 756 913 -5287 4 1362 1017 110 0 0 chr9 101860823 101860986 -22215186 + (TC)n Simple_repeat Simple_repeat 2 164 0 4 1362 285 29 0 0 chr9 101860986 101861019 -22215153 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1362 492 302 32 12 chr9 101861287 101861455 -22214717 - B4 SINE B4 -111 181 1 5 1362 708 274 34 74 chr9 101861584 101861899 -22214273 - L1MC4 LINE L1 -997 7045 6741 5 1362 366 23 0 0 chr9 101862335 101862378 -22213794 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1362 604 364 63 58 chr9 101862536 101862898 -22213274 + MLT1A LTR MaLR 10 373 -1 5 1362 194 265 0 20 chr9 101863128 101863178 -22212994 + L2b LINE L2 3325 3373 -2 5 1362 456 19 0 0 chr9 101863572 101863625 -22212547 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1362 362 326 26 52 chr9 101864167 101864361 -22211811 + L1ME2z LINE L1 5961 6149 -295 5 1362 273 279 28 28 chr9 101864877 101864984 -22211188 + L1M5 LINE L1 5404 5510 -614 5 1362 363 250 30 10 chr9 101865264 101865365 -22210807 + MER58D DNA MER1_type 281 383 -3 5 1362 201 320 210 36 chr9 101865499 101865885 -22210287 - L2 LINE L2 -658 2761 2309 5 1362 669 311 114 7 chr9 101866659 101866931 -22209241 + L2 LINE L2 2612 2912 -507 5 1362 1598 187 122 6 chr9 101868113 101868473 -22207699 + MTD LTR MaLR 18 419 0 5 1362 245 323 74 15 chr9 101869842 101869977 -22206195 + MER117 DNA MER1_type 3 145 -52 5 1362 602 208 112 0 chr9 101870189 101870314 -22205858 - RSINE1 SINE B4 -26 139 1 5 1362 245 380 125 28 chr9 101870711 101870887 -22205285 - MIR3 SINE MIR -8 200 8 5 1362 497 297 85 73 chr9 101872940 101873256 -22202916 + Lx9 LINE L1 7088 7407 -237 5 1362 378 0 0 0 chr9 101873958 101874000 -22202172 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1362 401 318 119 41 chr9 101874130 101874373 -22201799 - LTR16B LTR ERVL -135 328 67 5 1362 225 0 0 0 chr9 101874444 101874469 -22201703 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1362 183 42 0 0 chr9 101874706 101874730 -22201442 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1362 809 287 58 22 chr9 101875285 101875559 -22200613 + B4A SINE B4 1 284 -8 5 1362 615 161 0 0 chr9 101876064 101876182 -22199990 + (CATATA)n Simple_repeat Simple_repeat 5 122 0 5 1362 395 251 61 0 chr9 101876776 101876874 -22199298 - PB1D7 SINE Alu -9 111 9 5 1362 247 294 30 110 chr9 101876777 101876941 -22199231 - MT2B2 LTR ERVL -326 258 108 5 1362 227 330 43 0 chr9 101877070 101877157 -22199015 - MER5B DNA MER1_type -50 128 38 5 1362 660 281 14 7 chr9 101877157 101877304 -22198868 - MER45A DNA Tip100 0 178 31 5 1362 358 116 88 9 chr9 101877864 101877977 -22198195 + GA-rich Low_complexity Low_complexity 3 124 0 5 1362 222 241 74 0 chr9 101878686 101878740 -22197432 + B1F SINE Alu 89 146 -3 5 1362 394 240 131 46 chr9 101879163 101879316 -22196856 + MER5A DNA MER1_type 1 166 -23 5 1362 21 82 0 0 chr9 101880164 101880213 -22195959 + AT_rich Low_complexity Low_complexity 1 49 0 5 1362 244 387 40 73 chr9 101880472 101880720 -22195452 + MIRb SINE MIR 8 247 -21 5 1362 207 0 0 0 chr9 101882267 101882290 -22193882 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1362 265 24 48 0 chr9 101882606 101882648 -22193524 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1362 490 296 69 23 chr9 101882795 101882977 -22193195 - MER63A DNA AcHobo -40 170 9 5 1362 1172 172 28 14 chr9 101883056 101883274 -22192898 - URR1B DNA MER1_type 0 225 5 5 1362 314 282 2 0 chr9 101883329 101883419 -22192753 + MTEa LTR MaLR 1 91 -279 5 1362 828 270 30 5 chr9 101883429 101883626 -22192546 + B3 SINE B2 9 210 -6 5 1362 475 244 308 0 chr9 101883648 101883873 -22192299 + MTEa LTR MaLR 83 377 -2 5 1362 265 261 17 8 chr9 101884119 101884239 -22191933 + GA-rich Low_complexity Low_complexity 2 122 0 5 1362 213 108 0 0 chr9 101884499 101884536 -22191636 + (G)n Simple_repeat Simple_repeat 1 37 0 5 1362 228 43 65 0 chr9 101885770 101885816 -22190356 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1362 968 278 26 73 chr9 101888001 101888304 -22187868 + B4 SINE B4 3 291 -1 5 1362 489 239 20 101 chr9 101888492 101888641 -22187531 + RMER30 DNA MER1_type 47 183 -19 5 1362 238 282 23 23 chr9 101889125 101889212 -22186960 - LTR16C LTR ERVL -338 151 65 5 1362 555 366 105 44 chr9 101893033 101893556 -22182616 - L3 LINE CR1 -437 4052 3498 5 1362 782 324 81 50 chr9 101893902 101894285 -22181887 + MT2A LTR ERVL 1 395 -138 5 1362 303 193 0 0 chr9 101894334 101894422 -22181750 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 1362 1229 161 71 5 chr9 101895059 101895271 -22180901 + URR1A DNA MER1_type 1 226 0 5 1362 201 39 0 0 chr9 101896151 101896177 -22179995 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1362 468 271 146 0 chr9 101900079 101900223 -22175949 + MER53 DNA hAT 1 165 -28 5 1362 274 288 0 132 chr9 101900480 101900556 -22175616 - B4 SINE B4 0 292 227 5 1362 618 365 84 8 chr9 101900584 101900846 -22175326 - B4A SINE B4 -1 291 10 5 1362 668 296 17 72 chr9 101900839 101901076 -22175096 - B4 SINE B4 -64 228 5 5 1362 534 256 89 29 chr9 101901170 101901380 -22174792 - B3A SINE B2 0 216 1 5 1362 189 0 0 0 chr9 101901392 101901413 -22174759 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1362 333 155 0 0 chr9 101901512 101901570 -22174602 + (ATG)n Simple_repeat Simple_repeat 2 59 0 5 1362 441 0 0 0 chr9 101902456 101902505 -22173667 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1362 1493 231 60 17 chr9 101902896 101903249 -22172923 + MTE2b LTR MaLR 1 368 -11 5 1362 602 191 0 8 chr9 101903621 101903753 -22172419 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 5 1362 420 111 0 0 chr9 101905892 101905955 -22170217 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1362 2155 161 88 8 chr9 101906261 101906649 -22169523 + MTC LTR MaLR 1 419 -2 5 1362 266 337 119 0 chr9 101907930 101908031 -22168141 + MER58A DNA MER1_type 1 113 -111 5 1362 189 0 0 0 chr9 101908385 101908406 -22167766 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1362 396 0 0 0 chr9 101909203 101909247 -22166925 + (TTA)n Simple_repeat Simple_repeat 2 45 0 5 1362 2628 143 29 10 chr9 101909603 101910012 -22166160 + MTC LTR MaLR 1 417 -4 5 1362 183 167 17 85 chr9 101910651 101910710 -22165462 + L2a LINE L2 2581 2635 -784 5 1362 381 263 105 54 chr9 101910820 101911097 -22165075 + L2a LINE L2 2788 3078 -341 5 1362 476 308 34 34 chr9 101911295 101911443 -22164729 - RSINE1 SINE B4 -13 152 5 5 1362 280 298 106 58 chr9 101911445 101911634 -22164538 + L2a LINE L2 3229 3426 0 5 1362 196 197 224 15 chr9 101912006 101912073 -22164099 + L3 LINE CR1 894 974 -3515 5 1362 506 317 6 24 chr9 101912725 101912893 -22163279 + RSINE1 SINE B4 1 165 0 5 1362 610 367 119 0 chr9 101913857 101914135 -22162037 + LTR16B2 LTR ERVL 1 311 -151 5 1362 453 81 0 0 chr9 101914135 101914197 -22161975 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 5 1362 1265 41 0 0 chr9 101914472 101914619 -22161553 + B1_Mus2 SINE Alu 1 147 0 5 1362 286 270 186 46 chr9 101915074 101915268 -22160904 - L2a LINE L2 -1 3425 3205 5 1362 306 73 0 0 chr9 101915769 101915810 -22160362 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1362 419 309 65 0 chr9 101915832 101915971 -22160201 + Tigger5 DNA MER2_type 2173 2320 -86 5 1362 340 255 47 100 chr9 101915972 101916142 -22160030 + RMER15 LTR ERVL 1 161 -414 5 1362 433 294 160 68 chr9 101916134 101916397 -22159775 + RMER15 LTR ERVL 273 559 -16 5 1362 302 345 41 75 chr9 101916509 101916775 -22159397 - L2a LINE L2 -819 2600 2344 5 1362 312 340 101 5 chr9 101916797 101916986 -22159186 - L2a LINE L2 -1198 2221 2015 5 1362 767 296 9 9 chr9 101917308 101917526 -22158646 + ID_B1 SINE B4 2 219 -5 5 1362 623 292 28 7 chr9 101918150 101918295 -22157877 + B1F SINE Alu 1 148 -1 5 1362 1790 239 34 22 chr9 101918571 101918985 -22157187 + MTD LTR MaLR 1 419 0 5 1362 645 294 36 40 chr9 101919321 101919544 -22156628 + ID_B1 SINE B4 3 224 0 5 1362 1070 47 23 17 chr9 101919547 101919720 -22156452 + (GGAGA)n Simple_repeat Simple_repeat 2 175 0 5 1362 6903 60 5 2 chr9 101919741 101920598 -22155574 - L1_Mus1 LINE L1 0 6567 5709 5 1362 5524 108 40 5 chr9 101920594 101921410 -22154762 + L1_Mus1 LINE L1 4888 5732 -151 5 1362 307 296 60 32 chr9 101921594 101921732 -22154440 + L1M4c LINE L1 1701 1941 -4537 5 1362 606 268 47 32 chr9 101921786 101922137 -22154035 + L1M4c LINE L1 2336 2694 -3685 5 1362 306 263 62 21 chr9 101922212 101922309 -22153863 + ORR1E LTR MaLR 1 101 -258 5 1362 314 296 92 95 chr9 101922329 101922662 -22153510 + ORR1E LTR MaLR 21 360 -10 5 1362 2494 297 64 26 chr9 101922662 101924428 -22151744 + L1M4c LINE L1 2767 5883 -653 5 1362 185 94 0 30 chr9 101924464 101924497 -22151675 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 5 1362 267 270 47 65 chr9 101924520 101924627 -22151545 + L1M4c LINE L1 6023 6127 -412 5 1362 853 137 0 0 chr9 101924629 101924753 -22151419 + B2_Mm2 SINE B2 1 124 -71 5 1362 564 15 0 0 chr9 101924791 101924856 -22151316 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 5 1362 690 55 0 0 chr9 101926025 101926116 -22150056 + (GA)n Simple_repeat Simple_repeat 1 91 0 5 1362 561 327 103 5 chr9 101926298 101926522 -22149650 - MTE-int LTR MaLR -565 1015 770 5 1362 1999 79 3 31 chr9 101926719 101927005 -22149167 + L1_Mus2 LINE L1 6289 6566 0 5 1362 2328 266 38 15 chr9 101928606 101929267 -22146905 + Lx8 LINE L1 6441 7116 -357 5 1362 369 0 0 0 chr9 101929269 101929310 -22146862 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1362 24 32 0 0 chr9 101929443 101929474 -22146698 + AT_rich Low_complexity Low_complexity 1 31 0 5 1362 1363 267 7 12 chr9 101929474 101929764 -22146408 + B4 SINE B4 1 286 -6 5 1362 381 117 0 0 chr9 101929765 101929825 -22146347 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1362 484 192 20 0 chr9 101929826 101929925 -22146247 - L1M4 LINE L1 -463 5715 5615 5 1362 198 103 0 0 chr9 101930535 101930564 -22145608 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1362 342 0 0 0 chr9 101931294 101931332 -22144840 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1362 182 61 60 20 chr9 101932303 101932353 -22143819 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1362 304 340 150 6 chr9 101932490 101932650 -22143522 + MER5A DNA MER1_type 6 188 -1 5 1362 294 313 71 41 chr9 101932658 101932828 -22143344 - MIR3 SINE MIR -1 207 33 6 1362 347 363 52 16 chr9 101934265 101934458 -22141714 + L2 LINE L2 1322 1521 -1898 6 1362 333 0 0 0 chr9 101935168 101935205 -22140967 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1362 264 59 0 0 chr9 101935214 101935248 -22140924 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1362 23 0 0 0 chr9 101936058 101936081 -22140091 + AT_rich Low_complexity Low_complexity 1 23 0 6 1362 1957 179 24 19 chr9 101936202 101936572 -22139600 + ORR1D1 LTR MaLR 1 372 -2 6 1362 224 234 0 0 chr9 101937189 101937236 -22138936 + L2a LINE L2 3314 3360 -66 6 1362 183 301 62 31 chr9 101939956 101940052 -22136120 + MIRb SINE MIR 44 142 -126 6 1362 234 262 162 0 chr9 101940444 101940524 -22135648 + MIRb SINE MIR 113 205 -63 6 1362 419 100 14 0 chr9 101941863 101941933 -22134239 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1362 261 276 71 62 chr9 101942433 101942545 -22133627 + MIRm SINE MIR 164 276 0 6 1362 265 220 9 9 chr9 101942896 101943006 -22133166 + (TCCA)n Simple_repeat Simple_repeat 3 112 0 6 1362 1107 92 7 0 chr9 101946720 101946862 -22129310 - B1_Mus1 SINE Alu -5 143 1 6 1362 867 139 20 34 chr9 101946938 101947087 -22129085 + URR1A DNA MER1_type 79 225 -1 6 1362 207 114 29 0 chr9 101947633 101947668 -22128504 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 6 1362 203 329 49 55 chr9 101947699 101947863 -22128309 - L2a LINE L2 -42 3384 3222 6 1362 2313 71 3 44 chr9 101948779 101949118 -22127054 + L1Md_F2 LINE L1 6246 6570 -12 6 1362 1424 245 84 21 chr9 101951995 101952374 -22123798 - MTD LTR MaLR -14 405 3 6 1362 197 333 88 19 chr9 101952433 101952592 -22123580 - L2a LINE L2 -78 3348 3179 6 1362 222 346 51 85 chr9 101952679 101952856 -22123316 - L2a LINE L2 -344 3075 2905 6 1362 333 0 0 0 chr9 101952869 101952906 -22123266 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1362 339 25 0 0 chr9 101952906 101952945 -22123227 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1362 207 294 153 38 chr9 101953054 101953185 -22122987 - MIRb SINE MIR -58 210 65 6 1362 193 359 27 36 chr9 101953426 101953536 -22122636 - MIRb SINE MIR -30 238 130 6 1362 437 138 0 12 chr9 101954391 101954439 -22121733 + (TTCTCC)n Simple_repeat Simple_repeat 1 48 0 6 1362 1160 111 0 6 chr9 101954439 101954620 -22121552 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1362 437 138 0 12 chr9 101954620 101954652 -22121520 + (TTCTCC)n Simple_repeat Simple_repeat 5 36 0 6 1362 320 216 83 83 chr9 101955238 101955334 -22120838 - ID_B1 SINE B4 -8 216 121 6 1362 220 276 144 16 chr9 101955429 101955554 -22120618 - L3 LINE CR1 -15 4474 4334 6 1362 483 363 140 20 chr9 101955589 101956039 -22120133 + L1M5 LINE L1 4354 4857 -1289 6 1362 21 0 0 0 chr9 101956266 101956287 -22119885 + AT_rich Low_complexity Low_complexity 1 21 0 6 1362 337 315 191 44 chr9 101956417 101956689 -22119483 + L1M5 LINE L1 5370 5681 -559 6 1362 451 301 23 47 chr9 101958215 101958386 -22117786 + B4 SINE B4 1 167 -125 6 1362 298 232 42 0 chr9 101958474 101958569 -22117603 + (CA)n Simple_repeat Simple_repeat 2 100 0 6 1362 554 153 0 9 chr9 101958570 101958682 -22117490 + (TA)n Simple_repeat Simple_repeat 2 112 0 6 1362 222 215 62 0 chr9 101958685 101958750 -22117422 + (CATA)n Simple_repeat Simple_repeat 4 72 0 6 1362 258 146 12 24 chr9 101958780 101958864 -22117308 + A-rich Low_complexity Low_complexity 2 84 0 6 1362 579 300 54 131 chr9 101959720 101960034 -22116138 + B4A SINE B4 1 290 -2 6 1362 7858 57 0 4 chr9 101960612 101961587 -22114585 + L1Md_F2 LINE L1 5606 6576 -6 6 1362 303 224 0 20 chr9 101961656 101961812 -22114360 + (CA)n Simple_repeat Simple_repeat 1 152 0 6 1362 403 281 0 48 chr9 101961920 101962107 -22114065 + (CATA)n Simple_repeat Simple_repeat 1 178 0 6 1362 433 121 24 0 chr9 101962143 101962226 -22113946 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 1362 207 350 0 48 chr9 101962226 101962415 -22113757 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1362 563 288 0 0 chr9 101963366 101963491 -22112681 + ID_B1 SINE B4 82 206 -18 6 1362 308 272 32 21 chr9 101963877 101963971 -22112201 - MIRb SINE MIR -10 258 164 6 1362 758 349 77 43 chr9 101964306 101964722 -22111450 + MER21B LTR ERV1 433 862 -1 6 1362 675 57 0 0 chr9 101965155 101965243 -22110929 + (GGAA)n Simple_repeat Simple_repeat 3 90 0 6 1362 1418 201 35 26 chr9 101965488 101965799 -22110373 + Lx5 LINE L1 6728 7041 -9 6 1362 450 0 0 0 chr9 101965841 101965891 -22110281 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1362 449 299 116 14 chr9 101965895 101966041 -22110131 - B4 SINE B4 -103 189 29 6 1362 279 309 130 9 chr9 101966139 101966247 -22109925 + PB1 SINE Alu 3 123 -4 6 1362 22 0 0 0 chr9 101966247 101966269 -22109903 + AT_rich Low_complexity Low_complexity 1 22 0 6 1362 24 32 0 0 chr9 101966434 101966465 -22109707 + AT_rich Low_complexity Low_complexity 1 31 0 6 1362 2261 176 14 57 chr9 101970481 101970921 -22105251 - MTC LTR MaLR 0 421 1 6 1362 418 222 121 0 chr9 101971091 101971190 -22104982 - MIR SINE MIR -90 172 62 6 1362 201 260 0 20 chr9 101972311 101972322 -22103850 + (TG)n Simple_repeat Simple_repeat 2 12 0 6 1362 591 15 0 0 chr9 101972322 101972390 -22103782 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1362 201 260 0 20 chr9 101972390 101972429 -22103743 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1362 774 285 25 53 chr9 101972449 101972734 -22103438 - B4A SINE B4 -14 278 2 6 1362 192 140 224 17 chr9 101972899 101972957 -22103215 + MIRc SINE MIR 111 180 -88 6 1362 265 333 71 59 chr9 101973273 101973512 -22102660 - Tigger16a DNA Tigger -2 931 690 6 1362 252 333 68 68 chr9 101973276 101973540 -22102632 - Tigger16a DNA TcMar -302 631 368 6 1362 354 299 159 27 chr9 101973615 101973835 -22102337 + B4A SINE B4 25 273 -19 6 1362 353 58 19 0 chr9 101973874 101973926 -22102246 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1362 441 0 0 0 chr9 101973926 101973974 -22102198 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1363 642 321 6 6 chr9 101974384 101974465 -22101707 + ID SINE ID 1 81 -143 6 1363 420 281 8 58 chr9 101974465 101974586 -22101586 + PB1D10 SINE Alu 1 115 -2 6 1363 293 323 15 8 chr9 101976148 101976279 -22099893 + (TCCA)n Simple_repeat Simple_repeat 1 132 0 6 1363 410 211 10 0 chr9 101976299 101976403 -22099769 + (TCCA)n Simple_repeat Simple_repeat 3 107 0 6 1363 243 224 45 0 chr9 101976825 101976892 -22099280 + GA-rich Low_complexity Low_complexity 2 71 0 6 1363 908 119 12 12 chr9 101976893 101977063 -22099109 + (GGAA)n Simple_repeat Simple_repeat 3 172 0 6 1363 334 312 97 21 chr9 101977078 101977222 -22098950 + HAL1-3A_ME LINE L1 2284 2438 -420 6 1363 502 259 77 22 chr9 101978495 101978681 -22097491 + MLT1A0 LTR MaLR 162 372 -2 6 1363 28 29 0 0 chr9 101980298 101980333 -22095839 + AT_rich Low_complexity Low_complexity 1 35 0 6 1363 304 239 31 61 chr9 101980842 101980940 -22095232 + B4 SINE B4 8 102 -190 6 1363 231 36 0 0 chr9 101981038 101981066 -22095106 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1363 835 216 31 31 chr9 101981311 101981507 -22094665 + RMER13A LTR ERVK 1 196 -664 6 1363 413 66 0 16 chr9 101981949 101982011 -22094161 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1363 792 50 0 0 chr9 101982055 101982156 -22094016 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 6 1363 374 200 256 0 chr9 101982522 101982612 -22093560 - PB1D9 SINE Alu -7 113 1 6 1363 600 233 72 68 chr9 101984708 101984914 -22091258 + B4A SINE B4 24 230 -62 6 1363 258 318 149 19 chr9 101984914 101985068 -22091104 + B4A SINE B4 2 175 -117 6 1363 456 19 0 0 chr9 101985172 101985225 -22090947 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1363 356 264 173 16 chr9 101985304 101985323 -22090849 + B1F SINE Alu 1 86 -63 6 1363 501 247 10 0 chr9 101985323 101985420 -22090752 + ID_B1 SINE B4 116 213 -11 6 1363 356 264 173 16 chr9 101985420 101985431 -22090741 + B1F SINE Alu 87 147 -2 6 1363 181 315 106 21 chr9 101985542 101985636 -22090536 - MIRb SINE MIR -84 184 83 6 1363 486 33 0 0 chr9 101985639 101985699 -22090473 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 1363 315 0 0 0 chr9 101985699 101985733 -22090439 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1363 214 205 0 0 chr9 101985967 101986006 -22090166 - MIRc SINE MIR -122 146 108 6 1363 675 211 111 33 chr9 101986045 101986226 -22089946 - MTEa LTR MaLR -7 372 178 6 1363 591 168 0 0 chr9 101986231 101986350 -22089822 + CT-rich Low_complexity Low_complexity 2 120 0 6 1363 234 0 0 0 chr9 101986350 101986376 -22089796 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1363 237 275 73 24 chr9 101987350 101987432 -22088740 + B1F1 SINE Alu 19 104 -45 6 1363 188 336 106 32 chr9 101987529 101987599 -22088573 - L2c LINE L2 -232 3155 3075 6 1363 468 0 0 0 chr9 101987599 101987651 -22088521 + (TAAAA)n Simple_repeat Simple_repeat 3 54 0 6 1363 188 336 106 32 chr9 101987651 101987703 -22088469 - L2c LINE L2 -313 3074 3024 6 1363 440 336 0 51 chr9 101990406 101990563 -22085609 - ID_B1 SINE B4 -1 223 75 6 1363 252 327 34 34 chr9 101991574 101991691 -22084481 + MIRb SINE MIR 93 209 -59 6 1363 288 111 0 0 chr9 101991715 101991760 -22084412 + (CACCAT)n Simple_repeat Simple_repeat 4 48 0 6 1363 243 321 36 0 chr9 101992362 101992446 -22083726 + LTR33B LTR ERVL 73 159 -344 6 1363 1109 192 4 57 chr9 101992691 101992918 -22083254 - B3 SINE B2 -1 215 1 6 1363 465 296 56 0 chr9 101995402 101995527 -22080645 - B1F2 SINE Alu 0 149 18 6 1363 445 262 62 34 chr9 101996019 101996258 -22079914 + MIR SINE MIR 12 255 -7 6 1363 1070 287 120 34 chr9 101997023 101998050 -22078122 - L1MB7 LINE L1 -10 6174 5064 6 1363 279 157 0 0 chr9 101998073 101998124 -22078048 + (TTA)n Simple_repeat Simple_repeat 1 51 0 6 1363 253 296 0 0 chr9 101998124 101998188 -22077984 + B3A SINE B2 2 65 -151 6 1363 925 61 0 58 chr9 101998196 101998387 -22077785 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1363 418 325 19 31 chr9 101998387 101998549 -22077623 - RSINE1 SINE B4 -2 163 4 7 1363 314 277 89 32 chr9 101998553 101998676 -22077496 - L1MB7 LINE L1 -1106 5040 4911 6 1363 428 181 26 71 chr9 102000000 102000113 -22076059 + B1F SINE Alu 41 148 -1 1 1363 865 294 42 35 chr9 102000132 102000393 -22075779 + B4A SINE B4 16 278 -14 2 1363 246 81 0 0 chr9 102000414 102000451 -22075721 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1363 603 293 217 4 chr9 102000848 102001029 -22075143 + B4A SINE B4 2 215 -77 4 1363 207 0 0 0 chr9 102001029 102001052 -22075120 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 5 1363 603 293 217 4 chr9 102001052 102001110 -22075062 + B4A SINE B4 216 291 -1 4 1363 770 261 123 33 chr9 102001486 102001910 -22074262 + L1MC5 LINE L1 7452 7913 -48 6 1363 411 301 0 89 chr9 102002140 102002286 -22073886 + RSINE1 SINE B4 33 165 0 7 1363 216 0 0 0 chr9 102002290 102002314 -22073858 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1363 568 310 78 15 chr9 102002491 102002697 -22073475 + B4A SINE B4 60 278 -14 9 1363 459 0 0 0 chr9 102002705 102002756 -22073416 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1363 459 0 0 0 chr9 102002756 102002806 -22073366 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1363 263 279 68 23 chr9 102002826 102002914 -22073258 - L2b LINE L2 -367 3052 2961 1 1363 620 291 68 77 chr9 102003087 102003426 -22072746 - L2b LINE L2 -782 2637 2302 1 1363 185 0 0 39 chr9 102003801 102003827 -22072345 + (CCCCCA)n Simple_repeat Simple_repeat 3 27 0 1 1363 2387 221 57 27 chr9 102004316 102005397 -22070775 + L1MB7 LINE L1 4977 6095 -89 1 1363 279 284 86 0 chr9 102005628 102005709 -22070463 - MLT1G3 LTR MaLR -262 333 246 1 1363 1221 36 0 0 chr9 102006686 102006826 -22069346 - B1_Mus1 SINE Alu -8 140 1 1 1363 634 224 89 77 chr9 102008367 102008536 -22067636 + B4 SINE B4 5 175 -117 1 1363 342 209 108 74 chr9 102008458 102008654 -22067518 + RMER17A LTR ERVK 149 357 -394 1 1363 1272 51 17 0 chr9 102008654 102008831 -22067341 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1363 342 209 108 74 chr9 102008831 102008903 -22067269 + RMER17A LTR ERVK 358 426 -325 1 1363 270 0 0 0 chr9 102008907 102008937 -22067235 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1363 239 152 83 24 chr9 102009474 102009642 -22066530 + (CCCTG)n Simple_repeat Simple_repeat 1 178 0 2 1363 181 152 0 78 chr9 102009628 102009692 -22066480 + C-rich Low_complexity Low_complexity 4 62 0 2 1363 231 311 16 0 chr9 102011195 102011256 -22064916 + MIR SINE MIR 112 173 -89 2 1363 340 342 24 48 chr9 102011392 102011601 -22064571 + L1ME4a LINE L1 5682 5885 -239 2 1363 212 238 0 0 chr9 102012582 102012624 -22063548 + C-rich Low_complexity Low_complexity 1 42 0 2 1363 257 288 103 51 chr9 102012635 102012752 -22063420 - MLT2D LTR ERVL -94 320 198 2 1363 540 238 20 65 chr9 102012808 102012850 -22063322 - B4 SINE B4 -23 269 230 2 1363 243 0 0 0 chr9 102012850 102012877 -22063295 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1363 540 238 20 65 chr9 102012877 102012987 -22063185 - B4 SINE B4 -63 229 124 2 1363 321 89 0 0 chr9 102013010 102013055 -22063117 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1363 753 264 0 0 chr9 102013073 102013371 -22062801 + (TG)n Simple_repeat Simple_repeat 1 298 0 2 1363 306 197 33 0 chr9 102013375 102013436 -22062736 - B4 SINE B4 -227 65 3 2 1363 508 301 40 45 chr9 102013436 102013636 -22062536 - MLT2D LTR ERVL -212 202 4 2 1363 488 320 67 56 chr9 102015056 102015341 -22060831 + B4 SINE B4 5 292 0 3 1363 429 20 0 0 chr9 102016005 102016055 -22060117 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 3 1363 285 293 118 28 chr9 102016265 102016409 -22059763 + MLT1G3 LTR MaLR 246 402 -193 3 1363 315 0 0 0 chr9 102017233 102017268 -22058904 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1363 297 0 0 0 chr9 102017268 102017300 -22058872 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1363 1024 301 8 4 chr9 102017306 102017553 -22058619 - B4A SINE B4 -44 248 1 3 1363 261 0 0 0 chr9 102018085 102018114 -22058058 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1363 275 341 40 8 chr9 102018538 102018662 -22057510 - MER5A DNA MER1_type -4 185 58 3 1363 249 262 15 15 chr9 102019028 102019094 -22057078 - Charlie1a DNA MER1_type 0 1455 1390 3 1363 324 0 0 0 chr9 102019119 102019155 -22057017 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1363 681 308 127 20 chr9 102019202 102019557 -22056615 - Charlie1a DNA MER1_type -286 1169 777 3 1363 603 224 101 18 chr9 102019554 102019722 -22056450 + B4A SINE B4 111 292 0 4 1363 279 0 0 0 chr9 102019725 102019756 -22056416 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1363 186 43 0 0 chr9 102019756 102019778 -22056394 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1363 310 252 0 0 chr9 102019779 102019878 -22056294 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 1363 375 218 0 0 chr9 102019902 102020044 -22056128 + (CA)n Simple_repeat Simple_repeat 1 142 0 4 1363 493 368 92 51 chr9 102020068 102020458 -22055714 - Charlie1a DNA MER1_type -1025 430 25 3 1363 389 352 28 23 chr9 102020730 102020945 -22055227 - MIRb SINE MIR 0 268 53 4 1363 513 71 0 0 chr9 102020961 102021031 -22055141 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1363 306 0 0 0 chr9 102021031 102021064 -22055108 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1363 1036 205 61 184 chr9 102021157 102021374 -22054798 + ORR1D1 LTR MaLR 9 188 -186 4 1363 450 0 0 0 chr9 102021374 102021424 -22054748 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1363 1036 205 61 184 chr9 102021424 102021582 -22054590 + ORR1D1 LTR MaLR 189 338 -36 4 1363 769 168 15 0 chr9 102021584 102021715 -22054457 + ORR1C2 LTR MaLR 235 367 -17 4 1363 1064 241 79 5 chr9 102021721 102022070 -22054102 - MTD LTR MaLR -5 414 1 5 1363 621 285 70 33 chr9 102022083 102022297 -22053875 - B4 SINE B4 -69 223 2 5 1363 294 134 45 0 chr9 102022619 102022686 -22053486 + CT-rich Low_complexity Low_complexity 1 70 0 5 1363 1983 37 4 12 chr9 102023492 102023737 -22052435 - L1_Mus1 LINE L1 0 6567 6325 5 1363 2563 105 67 24 chr9 102023742 102024161 -22052011 + L1_Mm LINE L1 3058 3494 -2389 5 1363 360 285 60 40 chr9 102024580 102024730 -22051442 + MER53 DNA hAT 2 154 -39 5 1363 373 272 46 39 chr9 102024939 102025092 -22051080 + MLT1A0 LTR MaLR 212 365 0 5 1363 954 265 98 8 chr9 102026107 102026362 -22049810 + B4A SINE B4 15 292 0 5 1363 657 69 0 0 chr9 102029420 102029507 -22046665 + (GA)n Simple_repeat Simple_repeat 1 87 0 5 1363 209 288 34 0 chr9 102029621 102029680 -22046492 + MIR3 SINE MIR 145 205 -3 5 1363 929 77 0 0 chr9 102030216 102030333 -22045839 + 5S rRNA rRNA 1 117 -4 6 1363 180 176 0 0 chr9 102030333 102030367 -22045805 + A-rich Low_complexity Low_complexity 1 34 0 6 1363 291 71 0 0 chr9 102031403 102031445 -22044727 + (TAA)n Simple_repeat Simple_repeat 1 42 0 6 1363 340 317 109 37 chr9 102031638 102031959 -22044213 + HAL1 LINE L1 1427 1770 -737 6 1363 234 0 0 0 chr9 102032138 102032164 -22044008 + (TA)n Simple_repeat Simple_repeat 1 26 0 6 1363 466 238 79 73 chr9 102032169 102032346 -22043826 + HAL1 LINE L1 2011 2188 -319 6 1363 309 109 0 0 chr9 102033902 102033948 -22042224 + (TCC)n Simple_repeat Simple_repeat 1 46 0 6 1363 311 331 66 61 chr9 102034107 102034303 -22041869 + MER20 DNA MER1_type 21 217 -2 6 1363 500 259 56 0 chr9 102034559 102034667 -22041505 + B4A SINE B4 2 115 -177 6 1363 323 209 73 113 chr9 102034782 102034906 -22041266 + B4A SINE B4 101 219 -73 6 1363 330 334 107 63 chr9 102035400 102035760 -22040412 + L1M5 LINE L1 3398 3764 -2382 6 1363 319 322 67 63 chr9 102035952 102036207 -22039965 + L1M5 LINE L1 4037 4292 -1854 6 1363 471 266 43 49 chr9 102037117 102037279 -22038893 + B4 SINE B4 1 161 -131 6 1363 1074 248 9 53 chr9 102037456 102037775 -22038397 + L1MB8 LINE L1 5874 6178 0 7 1363 635 254 35 10 chr9 102038124 102038327 -22037845 + L1ME4a LINE L1 5714 5921 -203 7 1363 1263 227 51 125 chr9 102038662 102039055 -22037117 - ORR1D1 LTR MaLR -7 367 4 7 1363 436 208 62 0 chr9 102039194 102039290 -22036882 + ORR1D1 LTR MaLR 232 333 -41 7 1363 352 287 78 42 chr9 102039533 102039675 -22036497 + B1F2 SINE Alu 1 147 -2 7 1363 339 25 0 0 chr9 102039813 102039853 -22036319 + (GGA)n Simple_repeat Simple_repeat 2 41 0 7 1363 441 36 0 0 chr9 102040817 102040872 -22035300 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1363 200 285 26 70 chr9 102041909 102041995 -22034177 + L2c LINE L2 3113 3203 -223 7 1363 549 0 0 0 chr9 102042982 102043043 -22033129 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1363 943 261 51 55 chr9 102043403 102043695 -22032477 + B4A SINE B4 2 292 0 7 1363 540 0 0 0 chr9 102043697 102043757 -22032415 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1363 1351 268 35 38 chr9 102044665 102045037 -22031135 - MTE2a LTR MaLR -8 371 1 8 1363 255 278 16 27 chr9 102045446 102045585 -22030587 + L1M6 LINE L1 1514 1619 -4877 8 1363 600 23 35 0 chr9 102045649 102045735 -22030437 + (TG)n Simple_repeat Simple_repeat 1 89 0 8 1363 1943 212 26 31 chr9 102045869 102046287 -22029885 - MTD LTR MaLR 0 419 4 8 1363 2380 107 50 13 chr9 102046287 102046666 -22029506 + Lx5 LINE L1 5632 6024 -1026 8 1363 2067 123 17 0 chr9 102046675 102046967 -22029205 + Lx4A LINE L1 6625 6921 -137 8 1363 3232 158 12 28 chr9 102046990 102047556 -22028616 + Lx5 LINE L1 6006 6562 -488 8 1363 841 318 22 26 chr9 102048354 102048625 -22027547 + B4 SINE B4 2 271 -21 8 1363 207 139 0 0 chr9 102048664 102048700 -22027472 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1363 205 305 0 17 chr9 102048724 102048784 -22027388 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 8 1363 211 182 0 0 chr9 102048750 102048783 -22027389 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1363 259 264 14 0 chr9 102049335 102049407 -22026765 + ID4 SINE ID 3 75 -8 9 1363 183 320 67 19 chr9 102049471 102049576 -22026596 + MIRb SINE MIR 99 208 -60 9 1363 470 330 9 60 chr9 102049936 102050168 -22026004 + L3 LINE CR1 3512 3731 -758 9 1363 1892 179 56 22 chr9 102050559 102050970 -22025202 - RMER10A LTR ERVL -17 425 1 9 1363 817 256 86 4 chr9 102050990 102051233 -22024939 - Lx8 LINE L1 -201 7272 7010 9 1363 531 315 157 16 chr9 102051838 102052093 -22024079 + B4 SINE B4 2 292 0 9 1363 1259 303 60 12 chr9 102052335 102052839 -22023333 - L1MB4 LINE L1 -2 6178 5651 9 1363 415 292 20 99 chr9 102053247 102053329 -22022843 + B4A SINE B4 1 81 -211 9 1363 234 0 0 0 chr9 102053329 102053355 -22022817 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1363 415 292 20 99 chr9 102053355 102053424 -22022748 + B4A SINE B4 82 140 -152 9 1363 903 176 0 3 chr9 102055159 102055492 -22020680 + (TG)n Simple_repeat Simple_repeat 1 332 0 1 1363 588 272 118 59 chr9 102055528 102055782 -22020390 - B4 SINE B4 -22 270 2 1 1363 913 70 10 24 chr9 102056779 102056993 -22019179 + (TCTA)n Simple_repeat Simple_repeat 1 210 0 1 1363 513 0 0 0 chr9 102058479 102058536 -22017636 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1363 300 53 0 0 chr9 102058538 102058576 -22017596 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 1 1363 406 277 68 34 chr9 102059121 102059267 -22016905 + RSINE1 SINE B4 3 153 -12 1 1363 1134 273 7 7 chr9 102059317 102059605 -22016567 + B4 SINE B4 1 288 -4 1 1363 303 343 45 39 chr9 102059831 102060010 -22016162 + L1M5 LINE L1 5559 5738 -386 1 1363 531 0 0 0 chr9 102060144 102060203 -22015969 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1363 515 250 9 9 chr9 102060224 102060337 -22015835 - RSINE1 SINE B4 -50 115 3 1 1363 428 257 177 16 chr9 102060363 102060612 -22015560 - L1MD2 LINE L1 -712 5647 5359 1 1363 1080 247 88 112 chr9 102060599 102061085 -22015087 + L1MD2 LINE L1 5638 6119 -240 1 1363 827 278 33 86 chr9 102061085 102061388 -22014784 + B4 SINE B4 2 288 -4 1 1363 1080 247 88 112 chr9 102061388 102061436 -22014736 + L1MD2 LINE L1 6120 6163 -196 1 1363 420 20 0 0 chr9 102061436 102061485 -22014687 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1363 1080 247 88 112 chr9 102061485 102061600 -22014572 + L1MD2 LINE L1 6164 6272 -87 1 1363 517 224 99 61 chr9 102061618 102061799 -22014373 - B3A SINE B2 -4 191 4 1 1363 297 0 0 0 chr9 102064495 102064528 -22011644 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1363 423 92 0 0 chr9 102064541 102064606 -22011566 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1363 562 303 138 35 chr9 102064717 102065175 -22010997 + HAL1b LINE L1 183 687 -1322 1 1363 611 269 172 73 chr9 102065299 102065409 -22010763 + B4A SINE B4 15 123 -169 1 1363 522 0 0 0 chr9 102065409 102065467 -22010705 + (GGA)n Simple_repeat Simple_repeat 1 58 0 1 1363 611 269 172 73 chr9 102065467 102065589 -22010583 + B4A SINE B4 124 269 -23 1 1363 338 100 0 16 chr9 102065589 102065650 -22010522 + (CATA)n Simple_repeat Simple_repeat 4 63 0 1 1363 341 337 134 29 chr9 102065945 102066220 -22009952 + HAL1b LINE L1 1267 1570 -439 1 1363 244 309 30 20 chr9 102066224 102066323 -22009849 + PB1D10 SINE Alu 2 101 -16 1 1363 212 224 15 0 chr9 102066323 102066390 -22009782 + GA-rich Low_complexity Low_complexity 1 68 0 1 1363 186 240 0 0 chr9 102066591 102066641 -22009531 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 1 1363 24 32 0 0 chr9 102066933 102066964 -22009208 + AT_rich Low_complexity Low_complexity 1 31 0 1 1363 1145 82 0 0 chr9 102067505 102067651 -22008521 + B1_Mus2 SINE Alu 2 147 0 1 1363 221 118 0 19 chr9 102067658 102067710 -22008462 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 1363 795 276 75 85 chr9 102068458 102068834 -22007338 - MLT1B LTR MaLR -18 372 1 1 1363 185 278 68 27 chr9 102068836 102068910 -22007262 + MIR SINE MIR 176 252 -10 1 1363 207 0 0 0 chr9 102069213 102069236 -22006936 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1363 279 0 0 0 chr9 102069236 102069267 -22006905 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1363 226 309 149 0 chr9 102070220 102070314 -22005858 + PB1D10 SINE Alu 1 108 -9 1 1363 447 19 0 0 chr9 102071726 102071778 -22004394 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1363 462 172 16 16 chr9 102073316 102073440 -22002732 + CT-rich Low_complexity Low_complexity 1 124 0 1 1363 342 331 73 80 chr9 102073555 102073911 -22002261 + ORR1E LTR MaLR 4 351 -19 1 1363 304 288 83 25 chr9 102074029 102074150 -22002022 + MLT1I LTR MaLR 282 409 -2 1 1363 2548 133 10 43 chr9 102074403 102074819 -22001353 - MTB_Mm LTR MaLR -3 404 3 1 1363 724 331 148 21 chr9 102074964 102075359 -22000813 + MLT1G LTR MaLR 151 555 0 1 1363 408 20 0 0 chr9 102075694 102075743 -22000429 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1363 511 318 98 47 chr9 102077019 102077273 -21998899 - B4 SINE B4 -25 267 1 1 1363 512 241 58 14 chr9 102077851 102077990 -21998182 + Tigger9a DNA Tigger 208 352 -380 1 1363 216 336 7 35 chr9 102079463 102079605 -21996567 + GA-rich Low_complexity Low_complexity 2 139 0 1 1363 396 205 26 0 chr9 102079856 102079934 -21996238 - ID_B1 SINE B4 -14 210 131 1 1363 429 337 23 42 chr9 102080115 102080329 -21995843 - MIR SINE MIR -28 234 25 1 1363 1311 67 0 0 chr9 102080352 102080531 -21995641 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1363 301 312 71 16 chr9 102081697 102081824 -21994348 - MamRep4096 DNA hAT? -219 207 74 1 1363 210 71 0 0 chr9 102082153 102082181 -21993991 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1363 331 273 13 0 chr9 102084797 102084874 -21991298 + PB1D10 SINE Alu 25 102 -15 1 1363 3627 20 0 0 chr9 102084972 102085368 -21990804 - MTA_Mm LTR MaLR 0 396 1 1 1363 211 294 152 48 chr9 102087373 102087498 -21988674 - RSINE1 SINE B4 -12 153 16 1 1363 252 86 0 0 chr9 102087906 102087941 -21988231 + (GGGGA)n Simple_repeat Simple_repeat 2 36 0 1 1363 434 278 53 91 chr9 102088550 102088815 -21987357 + L1MC LINE L1 5390 5644 -2238 1 1363 334 270 0 0 chr9 102088815 102088889 -21987283 + L2a LINE L2 3353 3426 0 1 1363 407 314 0 24 chr9 102090646 102090773 -21985399 + MLT1A0 LTR MaLR 240 363 -2 1 1363 225 0 0 0 chr9 102092301 102092326 -21983846 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1363 1680 224 65 15 chr9 102093226 102093625 -21982547 + MTD LTR MaLR 1 419 0 1 1363 1004 172 86 29 chr9 102094010 102094220 -21981952 - URR1B DNA MER1_type -3 222 1 1 1363 261 83 0 0 chr9 102094492 102094528 -21981644 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1363 237 33 0 0 chr9 102096781 102096811 -21979361 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1363 191 270 15 31 chr9 102097863 102097928 -21978244 - MIR3 SINE MIR -16 192 129 1 1363 1467 75 5 0 chr9 102098703 102098891 -21977281 + B2_Mm1a SINE B2 2 190 -3 1 1363 524 265 205 0 chr9 102099229 102099395 -21976777 - ID_B1 SINE B4 -21 203 4 1 1363 376 200 31 82 chr9 102100503 102100601 -21975571 + MIR3 SINE MIR 105 197 -11 1 1363 255 273 25 38 chr9 102100994 102101074 -21975098 - L2a LINE L2 0 3426 3348 1 1363 1281 123 0 15 chr9 102102169 102102328 -21973844 + B2_Mm2 SINE B2 1 157 -38 1 1363 402 74 0 0 chr9 102102328 102102382 -21973790 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 1 1363 1281 123 0 15 chr9 102102382 102102420 -21973752 + B2_Mm2 SINE B2 158 195 0 1 1363 795 235 48 24 chr9 102102474 102102683 -21973489 + B3 SINE B2 3 216 0 1 1363 1168 136 0 16 chr9 102102868 102103055 -21973117 + B2_Mm2 SINE B2 3 186 -9 1 1363 252 264 52 52 chr9 102103341 102103437 -21972735 + L1MB7 LINE L1 5744 5839 -345 1 1363 1318 68 11 11 chr9 102103440 102103619 -21972553 + B2_Mm1t SINE B2 6 184 -9 1 1363 587 268 114 27 chr9 102103620 102103919 -21972253 + L1MB7 LINE L1 5830 6154 -30 1 1363 549 0 0 0 chr9 102104140 102104201 -21971971 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1363 333 0 0 0 chr9 102104201 102104237 -21971935 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 170 3008 254 58 32 chr9 102104243 102105117 -21971055 + RCHARR1 DNA MER1_type 77 973 -1 1 1364 216 197 40 108 chr9 102106113 102106187 -21969985 + L2c LINE L2 3250 3318 -69 1 1364 227 204 0 0 chr9 102106782 102106826 -21969346 + Lx9 LINE L1 6619 6662 -982 1 1364 780 158 7 0 chr9 102106824 102106963 -21969209 + Lx9 LINE L1 6893 7032 -612 1 1364 3954 196 113 14 chr9 102106953 102107842 -21968330 + Lx9 LINE L1 6668 7644 0 1 1364 297 0 0 0 chr9 102108266 102108299 -21967873 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1364 825 235 67 29 chr9 102108676 102108886 -21967286 + B4A SINE B4 2 219 -73 1 1364 297 0 0 0 chr9 102108925 102108958 -21967214 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1364 264 259 63 87 chr9 102109273 102109400 -21966772 + RMER15 LTR ERVL 16 139 -436 1 1364 587 344 53 23 chr9 102109431 102109696 -21966476 + RMER15 LTR ERVL 275 547 -28 1 1364 8640 29 0 11 chr9 102109720 102110974 -21965198 - L1Md_F2 LINE L1 0 6582 5343 1 1364 288 284 173 19 chr9 102111207 102111394 -21964778 + MIRb SINE MIR 1 209 -59 1 1364 453 267 78 43 chr9 102112658 102112799 -21963373 - RMER15 LTR ERVL -14 561 416 1 1364 266 375 29 14 chr9 102113150 102113288 -21962884 + MIR SINE MIR 77 216 -46 1 1364 369 0 0 0 chr9 102113441 102113482 -21962690 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1364 216 0 0 0 chr9 102115361 102115385 -21960787 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1364 387 0 0 0 chr9 102116595 102116638 -21959534 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1364 857 330 48 22 chr9 102116683 102116956 -21959216 - B4A SINE B4 -3 289 10 1 1364 396 0 0 0 chr9 102117019 102117063 -21959109 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 1 1364 186 281 0 0 chr9 102117604 102117668 -21958504 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1364 185 0 0 39 chr9 102118149 102118175 -21957997 + (GGA)n Simple_repeat Simple_repeat 1 25 0 1 1364 216 0 0 0 chr9 102118569 102118593 -21957579 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 1 1364 341 283 9 17 chr9 102119986 102120101 -21956071 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 1 1364 371 214 14 21 chr9 102120113 102120256 -21955916 + (CATATA)n Simple_repeat Simple_repeat 3 144 0 1 1364 425 255 7 0 chr9 102120289 102120430 -21955742 + (TA)n Simple_repeat Simple_repeat 2 143 0 1 1364 231 325 116 8 chr9 102120482 102120603 -21955569 + MARNA DNA Mariner 289 422 -164 1 1364 184 288 67 67 chr9 102124977 102125126 -21951046 + L2c LINE L2 3020 3168 -219 1 1364 321 295 61 18 chr9 102126424 102126538 -21949634 - L1ME3 LINE L1 -246 5916 5798 1 1364 355 178 68 14 chr9 102126551 102126625 -21949547 - PB1D10 SINE Alu -6 111 34 1 1364 225 0 0 0 chr9 102126838 102126863 -21949309 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1364 225 0 0 0 chr9 102126863 102126887 -21949285 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1364 1072 288 25 9 chr9 102126897 102127325 -21948847 - L1M2 LINE L1 -533 6829 6394 1 1364 189 171 0 0 chr9 102127325 102127360 -21948812 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1364 352 253 27 0 chr9 102127374 102127449 -21948723 - B4A SINE B4 -213 79 3 2 1364 1115 273 153 14 chr9 102127456 102128039 -21948133 - L1M2 LINE L1 -755 6450 5787 1 1364 587 282 9 56 chr9 102128475 102128708 -21947464 - L1M2 LINE L1 -1424 5781 5560 1 1364 1587 320 53 42 chr9 102128735 102129837 -21946335 - L1M2 LINE L1 -4259 2950 1836 1 1364 265 329 41 35 chr9 102130314 102130459 -21945713 - L1M2 LINE L1 -6601 608 463 1 1364 357 308 114 5 chr9 102130926 102131128 -21945044 - L1M4 LINE L1 -865 5281 5058 2 1364 390 42 0 0 chr9 102131191 102131239 -21944933 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1364 618 200 0 0 chr9 102131271 102131376 -21944796 - PB1 SINE Alu -7 120 16 2 1364 666 264 114 0 chr9 102131835 102132002 -21944170 + B4A SINE B4 101 286 -6 2 1364 254 81 27 0 chr9 102132024 102132061 -21944111 + (GGA)n Simple_repeat Simple_repeat 1 38 0 2 1364 811 178 0 12 chr9 102132066 102132237 -21943935 + GA-rich Low_complexity Low_complexity 1 169 0 2 1364 233 350 26 68 chr9 102132836 102133026 -21943146 - MIRc SINE MIR -4 264 83 2 1364 222 62 0 0 chr9 102135601 102135633 -21940539 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1364 204 154 0 25 chr9 102136360 102136400 -21939772 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 2 1364 509 259 167 36 chr9 102136442 102136610 -21939562 - B4A SINE B4 -82 210 21 2 1364 439 307 45 115 chr9 102138650 102139060 -21937112 - MLT1C LTR MaLR -7 383 1 2 1364 905 48 194 0 chr9 102139108 102139232 -21936940 + B1_Mus1 SINE Alu 1 148 0 2 1364 272 48 24 0 chr9 102139234 102139276 -21936896 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1364 338 289 102 51 chr9 102139450 102139647 -21936525 + LTR33 LTR ERVL 250 456 -59 2 1364 591 304 9 43 chr9 102139637 102139847 -21936325 - RMER15 LTR ERVL -9 566 364 2 1364 253 362 105 19 chr9 102140090 102140306 -21935866 + MIRb SINE MIR 29 266 -2 2 1364 428 219 43 0 chr9 102141681 102141845 -21934327 + GA-rich Low_complexity Low_complexity 5 175 0 2 1364 652 123 9 9 chr9 102141805 102141920 -21934252 + (GAGAA)n Simple_repeat Simple_repeat 2 116 0 2 1364 396 0 0 0 chr9 102144744 102144788 -21931384 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1364 225 83 0 100 chr9 102145293 102145333 -21930839 - U2 snRNA snRNA -152 36 1 2 1364 219 328 0 0 chr9 102145563 102145627 -21930545 + CT-rich Low_complexity Low_complexity 2 65 0 2 1364 253 331 124 39 chr9 102147036 102147165 -21929007 + MIRb SINE MIR 84 223 -45 2 1364 228 35 0 0 chr9 102147473 102147502 -21928670 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1364 237 301 146 116 chr9 102148568 102148801 -21927371 + MLT1C LTR MaLR 6 245 -222 2 1364 564 261 337 16 chr9 102148818 102149070 -21927102 + MTEa LTR MaLR 15 347 -32 2 1364 1088 222 30 0 chr9 102149076 102149279 -21926893 - B3 SINE B2 -6 210 2 2 1364 520 280 64 76 chr9 102149319 102149555 -21926617 + MLT1C LTR MaLR 221 453 -14 2 1364 234 0 0 0 chr9 102150352 102150378 -21925794 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1364 205 238 0 0 chr9 102150691 102150733 -21925439 + G-rich Low_complexity Low_complexity 1 42 0 2 1364 2739 302 57 39 chr9 102152614 102153186 -21922986 - Lx9 LINE L1 -175 7469 6855 2 1364 920 105 0 7 chr9 102153186 102153330 -21922842 + (TTTTC)n Simple_repeat Simple_repeat 2 144 0 2 1364 1167 50 0 7 chr9 102153333 102153474 -21922698 - B1_Mus1 SINE Alu -7 141 2 2 1364 2739 295 56 39 chr9 102153474 102154133 -21922039 - Lx9 LINE L1 -647 6997 6202 2 1364 653 251 97 7 chr9 102154149 102154339 -21921833 - B4A SINE B4 -74 218 1 2 1364 315 0 0 0 chr9 102154505 102154540 -21921632 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1364 450 302 25 71 chr9 102154678 102154716 -21921456 - B2_Mm2 SINE B2 -7 188 149 2 1364 432 0 0 0 chr9 102154716 102154764 -21921408 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1364 629 256 39 39 chr9 102154764 102154921 -21921251 - B3A SINE B2 -42 156 2 2 1364 1009 264 23 46 chr9 102155207 102155556 -21920616 + Charlie7 DNA MER1_type 383 723 -1889 2 1364 323 271 42 61 chr9 102155531 102155696 -21920476 + Charlie7 DNA MER1_type 2399 2560 -52 2 1364 501 244 176 0 chr9 102157234 102157365 -21918807 + RSINE1 SINE B4 12 165 0 2 1364 201 349 0 0 chr9 102157538 102157604 -21918568 - L2b LINE L2 -282 3093 3028 2 1364 21 0 0 0 chr9 102157882 102157903 -21918269 + AT_rich Low_complexity Low_complexity 1 21 0 2 1364 276 149 0 0 chr9 102160182 102160229 -21915943 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1364 784 275 74 70 chr9 102160241 102160456 -21915716 - B3A SINE B2 0 216 1 2 1364 914 156 13 26 chr9 102161154 102161305 -21914867 - B1_Mur1 SINE Alu 0 149 1 2 1364 180 111 0 0 chr9 102161381 102161408 -21914764 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1364 974 291 61 18 chr9 102161434 102161714 -21914458 - B4A SINE B4 0 292 1 2 1364 273 29 0 0 chr9 102164213 102164247 -21911925 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 2 1364 249 119 49 56 chr9 102165199 102165341 -21910831 + (TATAA)n Simple_repeat Simple_repeat 2 142 0 2 1364 454 293 38 81 chr9 102165477 102165637 -21910535 + RSINE1 SINE B4 13 165 0 2 1364 321 324 81 29 chr9 102165778 102165988 -21910184 + L1MC LINE L1 4033 4253 -1893 2 1364 237 255 40 69 chr9 102166376 102166477 -21909695 + LTR86A1 LTR ERVL 135 232 -281 2 1364 243 327 53 0 chr9 102166478 102166591 -21909581 + L1M5 LINE L1 5741 5859 -303 2 1364 507 297 37 37 chr9 102167010 102167171 -21909001 + B4A SINE B4 2 162 -130 2 1364 835 147 0 0 chr9 102167867 102167996 -21908176 - B1_Mur2 SINE Alu 0 149 21 2 1364 288 170 20 168 chr9 102167902 102168069 -21908103 - MT2B LTR ERVL -320 264 124 2 1364 367 196 123 38 chr9 102168117 102168223 -21907949 + MTEa LTR MaLR 265 379 0 2 1364 192 251 0 0 chr9 102168238 102168286 -21907886 + MIR SINE MIR 63 114 -154 2 1364 267 191 0 0 chr9 102168351 102168398 -21907774 + B4 SINE B4 5 51 -241 2 1364 1592 178 81 34 chr9 102168398 102168782 -21907390 + RMER17C LTR ERVK 1 402 -8 2 1364 587 313 113 23 chr9 102168785 102169004 -21907168 + B4 SINE B4 54 291 -1 2 1364 333 0 0 0 chr9 102169044 102169081 -21907091 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1364 414 281 105 29 chr9 102169306 102169481 -21906691 + MIR SINE MIR 60 240 -22 2 1364 257 259 126 59 chr9 102170019 102170138 -21906034 + IAPLTR3 LTR ERVK 199 325 -1 2 1364 1089 134 16 22 chr9 102171801 102171984 -21904188 + URR1A DNA MER1_type 45 226 0 2 1364 447 68 0 0 chr9 102172347 102172406 -21903766 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1364 246 146 0 59 chr9 102173452 102173503 -21902669 - MTEb LTR MaLR 0 379 332 2 1364 385 201 23 113 chr9 102173485 102173645 -21902527 - MTEb LTR MaLR -230 149 2 2 1364 21 0 0 0 chr9 102175491 102175512 -21900660 + AT_rich Low_complexity Low_complexity 1 21 0 2 1364 3590 157 143 24 chr9 102175785 102176221 -21899951 + RMER17A2 LTR ERVK 1 445 -461 2 1364 459 0 0 0 chr9 102176221 102176272 -21899900 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1364 3590 157 143 24 chr9 102176272 102176639 -21899533 + RMER17A2 LTR ERVK 446 899 -7 2 1364 21 0 0 0 chr9 102177335 102177356 -21898816 + AT_rich Low_complexity Low_complexity 1 21 0 2 1364 237 83 0 0 chr9 102177356 102177392 -21898780 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1364 413 263 10 0 chr9 102177423 102177522 -21898650 - RSINE1 SINE B4 -63 102 3 2 1364 226 233 52 52 chr9 102178186 102178263 -21897909 - MIRb SINE MIR -93 175 99 2 1364 213 39 0 0 chr9 102179451 102179477 -21896695 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1364 4525 12 0 0 chr9 102179702 102180195 -21895977 - MT2_Mm LTR ERVL 0 493 1 2 1364 319 0 0 0 chr9 102180195 102180233 -21895939 - MERVL-int LTR ERVL 0 5485 5448 2 1364 403 167 46 35 chr9 102180233 102180320 -21895852 - ORR1A3-int LTR MaLR -1323 640 553 2 1364 41940 15 8 0 chr9 102180320 102185637 -21890535 - MERVL-int LTR ERVL -125 5360 1 2 1364 4525 12 0 0 chr9 102185637 102186130 -21890042 - MT2_Mm LTR ERVL 0 493 1 2 1364 255 197 31 47 chr9 102186508 102186572 -21889600 + RMER15 LTR ERVL 3 65 -510 2 1364 2072 226 49 54 chr9 102186587 102187047 -21889125 + RMER15 LTR ERVL 27 484 -91 2 1364 1681 169 169 0 chr9 102187047 102187361 -21888811 + ORR1B2 LTR MaLR 1 367 0 2 1364 2072 226 49 54 chr9 102187361 102187452 -21888720 + RMER15 LTR ERVL 485 575 0 2 1364 474 49 0 0 chr9 102188802 102188863 -21887309 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1364 3259 50 5 8 chr9 102189065 102189464 -21886708 - MTB LTR MaLR 0 400 3 2 1364 618 331 62 21 chr9 102191417 102191753 -21884419 + Tigger13a DNA MER2_type 140 489 -282 2 1364 354 195 0 0 chr9 102192180 102192257 -21883915 + CT-rich Low_complexity Low_complexity 2 78 0 2 1364 254 298 66 54 chr9 102192290 102192446 -21883726 - MIRc SINE MIR -66 202 44 2 1364 223 306 16 0 chr9 102192697 102192759 -21883413 + L2c LINE L2 3305 3367 -20 2 1364 387 297 55 165 chr9 102195168 102195587 -21880585 + MTEb LTR MaLR 6 378 -1 2 1364 687 325 52 40 chr9 102195715 102196119 -21880053 - L1MC4a LINE L1 -1956 5926 5518 2 1364 333 0 0 0 chr9 102196352 102196389 -21879783 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1364 578 255 44 13 chr9 102196389 102196548 -21879624 + Tigger5 DNA MER2_type 2168 2331 -75 2 1364 367 302 67 37 chr9 102196566 102196700 -21879472 - ID_B1 SINE B4 -3 221 84 2 1364 241 300 62 12 chr9 102196701 102196782 -21879390 + Tigger5 DNA MER2_type 2322 2406 0 2 1364 392 284 251 5 chr9 102196835 102197045 -21879127 - B4 SINE B4 -7 285 24 2 1364 234 227 0 0 chr9 102197078 102197122 -21879050 - Charlie24 DNA MER1_type -17 2433 2390 2 1364 596 215 20 16 chr9 102197473 102197725 -21878447 + GA-rich Low_complexity Low_complexity 1 253 0 2 1364 510 17 0 0 chr9 102197747 102197806 -21878366 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 2 1364 279 0 0 0 chr9 102198469 102198500 -21877672 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1364 198 0 0 0 chr9 102198500 102198521 -21877651 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1364 525 311 99 21 chr9 102200398 102200631 -21875541 + MamRep137 DNA TcMar? 56 306 -138 2 1364 210 91 0 0 chr9 102200655 102200688 -21875484 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1364 333 0 0 0 chr9 102200773 102200810 -21875362 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1364 228 35 0 0 chr9 102202376 102202405 -21873767 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1364 378 0 0 0 chr9 102202405 102202446 -21873726 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1364 298 81 32 16 chr9 102203786 102203849 -21872323 + (TTGG)n Simple_repeat Simple_repeat 4 67 0 3 1364 716 177 115 0 chr9 102203849 102203979 -21872193 - B1_Mur1 SINE Alu -2 147 3 3 1364 252 350 120 0 chr9 102204091 102204208 -21871964 - MER33 DNA MER1_type -192 132 2 3 1364 229 297 48 105 chr9 102204211 102204335 -21871837 - MamGypLTR2c LTR Gypsy -76 992 876 3 1364 339 331 21 29 chr9 102205021 102205161 -21871011 + MIR SINE MIR 46 184 -78 3 1364 23 0 0 0 chr9 102205819 102205842 -21870330 + AT_rich Low_complexity Low_complexity 1 23 0 3 1364 404 365 21 70 chr9 102206103 102206430 -21869742 - L4 LINE RTE -89 1940 1630 3 1364 279 310 20 27 chr9 102206533 102206570 -21869602 + polypyrimidine Low_complexity Low_complexity 109 146 0 3 1364 1232 215 43 192 chr9 102206570 102207060 -21869112 - MTD LTR MaLR 0 419 3 3 1364 281 279 16 43 chr9 102207060 102207192 -21868980 + CT-rich Low_complexity Low_complexity 1 128 0 3 1364 906 60 0 0 chr9 102207597 102207714 -21868458 + (TC)n Simple_repeat Simple_repeat 1 117 0 3 1364 255 189 0 0 chr9 102208784 102208837 -21867335 + GA-rich Low_complexity Low_complexity 2 54 0 3 1364 195 328 0 0 chr9 102211367 102211425 -21864747 - L2c LINE L2 -2 3385 3328 3 1364 637 290 37 33 chr9 102211741 102212012 -21864160 + B4 SINE B4 3 274 -18 3 1364 1215 88 17 6 chr9 102212060 102212414 -21863758 + (CATA)n Simple_repeat Simple_repeat 1 358 0 3 1364 185 108 27 0 chr9 102213191 102213228 -21862944 + (GGGTG)n Simple_repeat Simple_repeat 4 41 0 3 1364 1445 149 97 4 chr9 102213888 102214178 -21861994 + RMER4B LTR ERVK 1 316 -269 3 1364 258 32 0 0 chr9 102214178 102214209 -21861963 + (GGA)n Simple_repeat Simple_repeat 2 32 0 3 1364 1372 192 97 31 chr9 102214209 102214267 -21861905 + RMER4B LTR ERVK 307 372 -94 3 1364 249 108 0 0 chr9 102214384 102214421 -21861751 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1364 617 255 80 163 chr9 102214624 102214924 -21861248 + B4A SINE B4 6 280 -12 3 1364 396 0 0 0 chr9 102214947 102214991 -21861181 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1364 450 0 0 0 chr9 102215048 102215098 -21861074 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1364 198 0 0 0 chr9 102215098 102215120 -21861052 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1364 628 307 62 18 chr9 102215137 102215575 -21860597 + L1M4 LINE L1 1376 1832 -5072 3 1364 259 314 26 65 chr9 102216027 102216271 -21859901 + L1M4 LINE L1 2236 2468 -4540 3 1364 282 186 51 0 chr9 102216660 102216719 -21859453 - MLT1A1 LTR MaLR -92 316 255 3 1364 405 0 0 0 chr9 102217743 102217788 -21858384 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 1364 339 286 0 0 chr9 102218222 102218355 -21857817 + (TG)n Simple_repeat Simple_repeat 1 133 0 3 1364 678 269 99 37 chr9 102218464 102218707 -21857465 - B4 SINE B4 -34 258 1 3 1364 302 253 60 124 chr9 102219792 102219977 -21856195 + MIRb SINE MIR 86 258 -10 3 1364 205 315 83 70 chr9 102220356 102220513 -21855659 + L3b LINE CR1 176 334 -148 3 1364 289 156 0 15 chr9 102220691 102220756 -21855416 + Lx9 LINE L1 7581 7644 0 3 1364 549 279 0 52 chr9 102220785 102220921 -21855251 + RSINE1 SINE B4 12 140 -25 3 1364 22 35 0 0 chr9 102221022 102221051 -21855121 + AT_rich Low_complexity Low_complexity 1 29 0 3 1364 367 276 178 19 chr9 102222609 102222823 -21853349 + MIRb SINE MIR 5 252 -16 3 1364 281 366 20 101 chr9 102224185 102224334 -21851838 + MLT1A1 LTR MaLR 21 157 -251 3 1364 231 298 58 35 chr9 102224467 102224554 -21851618 + MLT1A1 LTR MaLR 320 408 0 3 1364 1058 284 11 7 chr9 102224677 102224954 -21851218 - B4A SINE B4 -14 278 1 3 1364 1315 170 5 5 chr9 102225184 102225397 -21850775 + URR1B DNA MER1_type 7 219 -6 3 1364 243 355 140 23 chr9 102225419 102225684 -21850488 + L2c LINE L2 3080 3375 -12 3 1364 252 296 28 84 chr9 102225691 102225798 -21850374 - Tigger16b DNA Tigger -174 163 63 3 1364 803 286 10 10 chr9 102227456 102227657 -21848515 + ID_B1 SINE B4 1 201 -23 3 1364 954 106 0 0 chr9 102227662 102227803 -21848369 + (TAGA)n Simple_repeat Simple_repeat 2 142 0 3 1364 890 290 40 64 chr9 102227958 102228286 -21847886 - MLT1C LTR MaLR -141 326 7 3 1364 303 161 18 0 chr9 102228307 102228363 -21847809 + L1MD3 LINE L1 7938 7994 -1 3 1364 504 0 0 0 chr9 102230386 102230442 -21845730 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1364 311 301 29 5 chr9 102230471 102230617 -21845555 + MIRc SINE MIR 1 157 -111 3 1364 1131 82 7 0 chr9 102230627 102230773 -21845399 + B1_Mus1 SINE Alu 2 148 0 3 1364 187 367 65 32 chr9 102231330 102231485 -21844687 + L3b LINE CR1 42 201 -281 3 1364 1696 172 47 60 chr9 102231936 102231981 -21844191 + RLTR15 LTR ERVK 1 55 -304 3 1364 221 0 35 0 chr9 102231981 102232010 -21844162 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1364 1696 172 47 60 chr9 102232010 102232328 -21843844 + RLTR15 LTR ERVK 56 359 0 3 1364 334 321 208 16 chr9 102232440 102232690 -21843482 + L3 LINE CR1 3330 3627 -862 3 1364 708 326 114 92 chr9 102233011 102233555 -21842617 - MLT1G1 LTR MaLR -9 570 15 3 1364 213 197 111 32 chr9 102234398 102234461 -21841711 + MIRc SINE MIR 90 157 -111 3 170 234 300 81 60 chr9 102236125 102236274 -21839898 + MLT2B4 LTR ERVL 304 455 -101 3 1365 939 164 30 10 chr9 102236322 102236519 -21839653 - Lx LINE L1 -7 6647 6447 3 1365 3216 138 2 0 chr9 102236530 102237001 -21839171 + Lx LINE L1 5872 6343 -311 3 1365 279 0 0 0 chr9 102237097 102237128 -21839044 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 1365 354 305 113 35 chr9 102237464 102237714 -21838458 + HAL1-3A_ME LINE L1 2284 2466 -392 3 1365 253 258 30 0 chr9 102238391 102238457 -21837715 + L1M5 LINE L1 5539 5606 -518 3 1365 248 229 82 45 chr9 102238479 102238589 -21837583 - L1MC4 LINE L1 0 8042 7929 3 1365 234 300 0 0 chr9 102238750 102238830 -21837342 - L1MC4 LINE L1 -197 7845 7766 3 1365 26 0 0 0 chr9 102239008 102239034 -21837138 + AT_rich Low_complexity Low_complexity 1 26 0 3 1365 358 324 52 41 chr9 102240003 102240273 -21835899 + B4A SINE B4 1 273 -19 3 1365 1593 296 93 33 chr9 102241018 102241828 -21834344 + L1ME1 LINE L1 5322 6179 0 3 1365 1224 254 45 39 chr9 102242641 102242997 -21833175 + MTE2b LTR MaLR 22 379 0 3 1365 258 353 10 0 chr9 102243586 102243688 -21832484 + (CA)n Simple_repeat Simple_repeat 1 103 0 3 1365 740 302 117 34 chr9 102243876 102244140 -21832032 + B4A SINE B4 1 286 -6 3 1365 242 256 265 76 chr9 102244873 102245084 -21831088 + B4A SINE B4 42 292 0 3 1365 360 168 0 0 chr9 102245085 102245186 -21830986 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 1365 507 366 92 46 chr9 102245909 102246258 -21829914 + MLT1K LTR MaLR 34 398 -197 3 1365 677 284 43 5 chr9 102246387 102246571 -21829601 - B4A SINE B4 -96 196 6 3 1365 238 106 43 0 chr9 102247285 102247332 -21828840 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1365 186 191 0 0 chr9 102247405 102247447 -21828725 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1365 304 294 86 68 chr9 102247577 102247694 -21828478 + L2b LINE L2 3240 3358 -17 3 1365 525 333 127 53 chr9 102248237 102248592 -21827580 - MLT1G1 LTR MaLR -2 577 197 3 1365 342 67 0 0 chr9 102249705 102249750 -21826422 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1365 637 270 93 63 chr9 102251126 102251426 -21824746 + MTEb LTR MaLR 64 372 -7 3 1365 321 367 58 17 chr9 102252768 102252940 -21823232 + MIR SINE MIR 14 192 -70 3 1365 396 0 0 0 chr9 102252942 102252986 -21823186 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1365 252 0 0 0 chr9 102253943 102253971 -21822201 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 3 1365 459 0 0 0 chr9 102255097 102255148 -21821024 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1365 206 180 16 0 chr9 102256852 102256913 -21819259 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1365 914 162 0 11 chr9 102258549 102258724 -21817448 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 3 1365 253 317 41 7 chr9 102261243 102261389 -21814783 + L1M6 LINE L1 65 215 -6281 3 1365 360 0 0 0 chr9 102261439 102261479 -21814693 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1365 845 317 63 52 chr9 102261479 102261578 -21814594 - Lx8 LINE L1 -7 7466 7357 3 1365 252 0 0 0 chr9 102261578 102261606 -21814566 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1365 845 317 63 52 chr9 102261606 102261949 -21814223 - Lx8 LINE L1 -117 7356 7019 3 1365 445 289 160 15 chr9 102261952 102262152 -21814020 + Lx8 LINE L1 6592 6820 -653 3 1365 243 88 0 0 chr9 102262760 102262794 -21813378 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 3 1365 6891 83 81 3 chr9 102262794 102264103 -21812069 - L1_Mus4 LINE L1 -15 6621 5209 3 1365 17149 144 30 14 chr9 102264117 102267804 -21808368 - L1_Mus4 LINE L1 -1590 4293 548 3 1365 185 189 0 98 chr9 102267837 102267878 -21808294 - L3 LINE CR1 -3614 875 839 3 1365 281 89 0 22 chr9 102268255 102268301 -21807871 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 3 1365 561 303 8 8 chr9 102268322 102268455 -21807717 - RSINE1 SINE B4 -18 147 15 3 1365 303 49 0 0 chr9 102268506 102268547 -21807625 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1365 677 244 138 77 chr9 102268886 102269343 -21806829 - L1MA9 LINE L1 -258 6054 5570 3 1365 562 216 14 123 chr9 102269540 102269713 -21806459 - B4A SINE B4 -55 237 68 3 1365 324 0 0 0 chr9 102269713 102269749 -21806423 + (TTG)n Simple_repeat Simple_repeat 3 38 0 3 1365 556 299 94 89 chr9 102269749 102269810 -21806362 - B4 SINE B4 -225 67 2 3 1365 1716 294 77 60 chr9 102269814 102270875 -21805297 - L1MA9 LINE L1 -772 5368 4290 3 1365 27 49 0 0 chr9 102271386 102271427 -21804745 + AT_rich Low_complexity Low_complexity 1 41 0 3 1365 1374 135 10 10 chr9 102271568 102271777 -21804395 + B3 SINE B2 2 210 -6 3 1365 415 346 41 54 chr9 102272146 102272550 -21803622 + L1MC4 LINE L1 2175 2583 -3631 3 1365 189 0 0 0 chr9 102273013 102273034 -21803138 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1365 261 273 30 0 chr9 102273077 102273143 -21803029 + ID_B1 SINE B4 108 175 -49 3 1365 248 286 39 13 chr9 102273143 102273155 -21803017 + PB1D10 SINE Alu 27 106 -11 3 1365 200 86 0 28 chr9 102273170 102273206 -21802966 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 3 1365 195 129 0 0 chr9 102273392 102273423 -21802749 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1365 234 321 0 24 chr9 102273768 102273851 -21802321 + ID4 SINE ID 2 82 -1 4 1365 250 245 140 55 chr9 102274106 102274270 -21801902 + L1MC4 LINE L1 4320 4497 -1717 3 1365 2059 144 29 6 chr9 102274310 102274659 -21801513 - Lx5 LINE L1 0 7050 6694 4 1365 345 295 32 0 chr9 102275455 102275550 -21800622 + U6 snRNA snRNA 10 107 0 4 1365 615 323 0 28 chr9 102275550 102275805 -21800367 + L1MB4 LINE L1 5882 6129 -51 4 1365 317 318 153 36 chr9 102275845 102276093 -21800079 + L1MC4 LINE L1 5367 5643 -603 3 1365 225 0 0 0 chr9 102277326 102277351 -21798821 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1365 306 0 0 0 chr9 102277351 102277384 -21798788 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1365 400 162 15 0 chr9 102277552 102277620 -21798552 + ID4_ SINE ID 2 70 -13 4 1365 371 358 55 6 chr9 102277692 102277855 -21798317 + MTEa LTR MaLR 13 183 -196 4 1365 467 109 27 18 chr9 102277874 102277986 -21798186 + (TCTG)n Simple_repeat Simple_repeat 2 114 0 4 1365 206 359 98 25 chr9 102278480 102278643 -21797529 + L3 LINE CR1 3279 3453 -1036 4 1365 863 201 20 25 chr9 102279444 102279643 -21796529 + Lx4B LINE L1 6860 7057 -1 4 1365 401 250 179 0 chr9 102279751 102279891 -21796281 + MER33 DNA MER1_type 154 318 -6 4 1365 1602 233 54 20 chr9 102280089 102280496 -21795676 + Lx6 LINE L1 7028 7448 -12 4 1365 314 307 105 20 chr9 102280771 102280924 -21795248 - L2b LINE L2 -4 3422 3241 4 1365 1969 158 166 3 chr9 102283821 102284183 -21791989 - MTC LTR MaLR 0 421 1 4 1365 540 160 0 0 chr9 102284183 102284283 -21791889 - MTC-int LTR MaLR 0 1258 1159 4 1365 439 216 10 0 chr9 102284284 102284386 -21791786 + Lx6 LINE L1 7340 7442 -18 4 1365 1281 96 34 0 chr9 102284386 102284563 -21791609 + B2_Mm1t SINE B2 2 184 -9 4 1365 348 165 14 18 chr9 102284614 102284680 -21791492 + B2_Mm2 SINE B2 46 116 -82 4 1365 225 0 0 0 chr9 102284695 102284720 -21791452 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 4 1365 5577 171 62 30 chr9 102284758 102285894 -21790278 - MTC-int LTR MaLR -86 1172 1 4 1365 2883 138 5 2 chr9 102285894 102286314 -21789858 - MTC LTR MaLR 0 421 1 4 1365 195 42 0 0 chr9 102286843 102286867 -21789305 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1365 840 268 62 9 chr9 102287227 102287453 -21788719 + B4A SINE B4 6 243 -49 4 1365 319 304 107 51 chr9 102287820 102287997 -21788175 - MER5A DNA MER1_type -2 187 1 4 1365 234 367 61 26 chr9 102288201 102288362 -21787810 - MLT1E3 LTR MaLR -205 475 317 4 1365 495 274 0 13 chr9 102288424 102288559 -21787613 - MLT1E3 LTR MaLR -447 177 61 4 1365 968 283 45 51 chr9 102289303 102289635 -21786537 - MTEb LTR MaLR 0 379 50 4 1365 331 253 53 0 chr9 102290198 102290273 -21785899 - MTEb LTR MaLR -299 80 2 4 1365 187 275 72 0 chr9 102290484 102290553 -21785619 + L2a LINE L2 3305 3378 -48 4 1365 419 259 18 18 chr9 102291198 102291312 -21784860 - RSINE1 SINE B4 -39 126 13 4 1365 733 74 0 0 chr9 102291297 102291392 -21784780 - B2_Mm2 SINE B2 -100 95 1 4 1365 3093 128 50 12 chr9 102291456 102291961 -21784211 - RLTR28 LTR ERVL 0 524 1 4 1365 534 306 147 32 chr9 102292694 102293047 -21783125 + L1M2 LINE L1 1638 2040 -4809 4 1365 1352 88 5 5 chr9 102293047 102293231 -21782941 + B2_Mm2 SINE B2 2 185 -10 4 1365 534 321 132 31 chr9 102293231 102294109 -21782063 + L1M2 LINE L1 2041 3084 -3465 4 1365 225 274 0 0 chr9 102294113 102294164 -21782008 + L2b LINE L2 3324 3374 -1 4 1365 595 296 16 0 chr9 102294245 102294431 -21781741 + MER5A DNA MER1_type 1 189 0 4 1365 755 217 0 32 chr9 102295001 102295158 -21781014 + B4A SINE B4 141 292 0 4 1365 1721 207 66 42 chr9 102295747 102296156 -21780016 - MTD LTR MaLR 0 419 1 4 1365 408 140 0 0 chr9 102296285 102296378 -21779794 + (TCTG)n Simple_repeat Simple_repeat 4 96 0 4 1365 994 276 25 7 chr9 102296416 102296690 -21779482 - B4 SINE B4 -13 279 1 4 1365 525 282 6 55 chr9 102296696 102296861 -21779311 - MLT1B LTR MaLR -233 157 1 4 1365 714 143 0 0 chr9 102298188 102298307 -21777865 + (ATG)n Simple_repeat Simple_repeat 1 119 0 4 1365 235 231 59 53 chr9 102298549 102298671 -21777501 + MIRb SINE MIR 33 158 -118 4 1365 363 162 11 159 chr9 102299555 102299640 -21776532 + ORR1E LTR MaLR 1 72 -287 4 1365 2000 154 111 21 chr9 102299640 102300019 -21776153 + MTC LTR MaLR 1 413 -8 4 1365 985 227 140 53 chr9 102300023 102300288 -21775884 + ORR1E LTR MaLR 66 353 -6 4 1365 574 292 219 6 chr9 102300301 102300621 -21775551 - MLT1D LTR MaLR -117 388 1 4 1365 1138 251 75 42 chr9 102300991 102301352 -21774820 - MTEa LTR MaLR -2 377 5 4 1365 435 63 0 0 chr9 102301477 102301540 -21774632 + (CTG)n Simple_repeat Simple_repeat 1 63 0 4 1365 196 319 0 0 chr9 102301689 102301736 -21774436 + L2b LINE L2 3253 3299 -76 4 1365 370 316 83 13 chr9 102301885 102302042 -21774130 - MLT1C LTR MaLR 0 467 300 4 1365 502 214 95 37 chr9 102302165 102302366 -21773806 + B4A SINE B4 4 269 -23 4 1365 378 0 0 0 chr9 102302400 102302442 -21773730 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1365 305 283 62 62 chr9 102302467 102302580 -21773592 - MLT1C LTR MaLR -390 115 3 4 1365 405 0 0 0 chr9 102304519 102304564 -21771608 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1365 675 111 39 0 chr9 102304570 102304723 -21771449 + (CAGA)n Simple_repeat Simple_repeat 2 160 0 4 1365 900 256 13 57 chr9 102305126 102305354 -21770818 + B4A SINE B4 7 224 -68 4 1365 24 0 0 0 chr9 102305354 102305378 -21770794 + AT_rich Low_complexity Low_complexity 1 24 0 4 1365 465 19 0 0 chr9 102305430 102305484 -21770688 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1365 877 292 71 27 chr9 102306565 102306903 -21769269 - ORR1E LTR MaLR -6 353 1 4 1365 468 0 0 0 chr9 102307406 102307458 -21768714 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1365 405 0 0 0 chr9 102307663 102307708 -21768464 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1365 197 323 89 20 chr9 102307809 102307910 -21768262 + MIRc SINE MIR 37 144 -124 4 1365 238 254 0 40 chr9 102308424 102308498 -21767674 + (CGGG)n Simple_repeat Simple_repeat 1 71 0 4 1365 860 290 74 50 chr9 102310030 102310368 -21765804 + MTEa LTR MaLR 30 375 -4 4 1365 597 308 114 19 chr9 102310368 102310795 -21765377 + L1MB5 LINE L1 5641 6109 -65 4 1365 1012 173 118 5 chr9 102311191 102311394 -21764778 - URR1A DNA MER1_type 0 226 1 4 1365 414 0 0 0 chr9 102312040 102312086 -21764086 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1365 319 288 125 9 chr9 102312226 102312338 -21763834 + B1F1 SINE Alu 24 148 -1 4 1365 321 239 0 0 chr9 102312354 102312421 -21763751 + ID4 SINE ID 2 68 -15 4 1365 234 254 0 43 chr9 102312965 102313035 -21763137 + MLT1G LTR MaLR 68 134 -457 4 1365 294 355 19 90 chr9 102313299 102313454 -21762718 + MLT1G1 LTR MaLR 433 576 -3 4 1365 767 335 62 16 chr9 102313466 102314016 -21762156 - L1MC4 LINE L1 -743 5471 4897 4 1365 703 307 65 30 chr9 102314263 102314806 -21761366 - L1MC4 LINE L1 -1488 4726 4140 4 1365 293 296 85 4 chr9 102314978 102315178 -21760994 - L1MC4 LINE L1 -2316 3898 3675 4 1365 1191 327 70 12 chr9 102315303 102315730 -21760442 - MER82 DNA MER2_type 0 653 202 4 1365 330 286 0 0 chr9 102315969 102316053 -21760119 + B1_Mur1 SINE Alu 60 143 -6 4 1365 1116 172 58 10 chr9 102316064 102316270 -21759902 + B3 SINE B2 1 216 0 4 1365 230 274 16 0 chr9 102316569 102316631 -21759541 - L1MD LINE L1 -689 5670 5608 4 1365 237 310 99 15 chr9 102316695 102316826 -21759346 - L1M2 LINE L1 -1991 4152 4011 4 1365 278 198 158 12 chr9 102316868 102316950 -21759222 - MLT1C LTR MaLR -3 387 294 4 1365 1494 238 92 18 chr9 102317073 102317463 -21758709 - MTD LTR MaLR 0 419 1 4 1365 348 229 198 9 chr9 102317463 102317567 -21758605 - MLT1C LTR MaLR -271 196 73 4 1365 338 279 21 49 chr9 102317622 102317765 -21758407 - L1MC4 LINE L1 -4711 1504 1366 4 1365 312 316 0 10 chr9 102318113 102318209 -21757963 + LTR40a LTR ERVL 425 519 0 4 1365 669 284 70 142 chr9 102318249 102318635 -21757537 - L1MC4 LINE L1 -4896 1319 962 4 1365 312 27 0 0 chr9 102318679 102318716 -21757456 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1365 225 65 0 0 chr9 102318728 102318759 -21757413 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1365 1572 233 58 39 chr9 102319102 102319513 -21756659 + MTD LTR MaLR 1 419 0 4 1365 2148 193 22 12 chr9 102320138 102320542 -21755630 - MTD LTR MaLR -11 408 1 4 1365 459 333 161 13 chr9 102320710 102321020 -21755152 - L1M5 LINE L1 -3560 2586 2231 4 1365 908 243 5 27 chr9 102321257 102321477 -21754695 + B3 SINE B2 2 216 0 4 1365 279 276 40 20 chr9 102321511 102321611 -21754561 + HAL1b LINE L1 1652 1753 -256 4 1365 206 227 0 0 chr9 102321637 102321681 -21754491 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1365 245 51 26 0 chr9 102322440 102322479 -21753693 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1365 194 380 25 11 chr9 102322783 102322895 -21753277 + MIRc SINE MIR 57 174 -94 4 1365 21 0 0 0 chr9 102323373 102323394 -21752778 + AT_rich Low_complexity Low_complexity 1 21 0 4 1365 439 197 154 10 chr9 102323422 102323526 -21752646 + B1_Mur1 SINE Alu 1 119 -30 4 1365 189 0 0 0 chr9 102323526 102323547 -21752625 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1365 318 250 205 8 chr9 102323547 102323559 -21752613 + B1F SINE Alu 120 139 -10 4 1365 332 155 233 23 chr9 102323583 102323661 -21752511 + B1_Mus1 SINE Alu 43 139 -9 4 1365 348 64 0 0 chr9 102323661 102323708 -21752464 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1365 248 323 52 35 chr9 102324125 102324298 -21751874 + L2c LINE L2 3207 3382 -5 4 1365 361 268 31 39 chr9 102324438 102324566 -21751606 - L1M5 LINE L1 -462 5662 5536 4 1365 683 283 74 57 chr9 102324648 102325011 -21751161 + L1MA6 LINE L1 5880 6255 -36 4 1365 360 0 0 0 chr9 102325139 102325179 -21750993 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1365 393 196 8 89 chr9 102325393 102325516 -21750656 - PB1 SINE Alu -14 113 1 4 1365 195 69 0 0 chr9 102325526 102325555 -21750617 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1365 450 0 0 0 chr9 102326779 102326829 -21749343 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1365 325 319 73 30 chr9 102327748 102327827 -21748345 + B4 SINE B4 3 90 -202 4 1365 222 37 0 0 chr9 102327827 102327854 -21748318 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1365 325 319 73 30 chr9 102327854 102327939 -21748233 + B4 SINE B4 91 174 -118 4 1365 342 0 0 0 chr9 102328064 102328102 -21748070 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1365 435 19 0 0 chr9 102328102 102328153 -21748019 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1365 273 302 59 44 chr9 102328365 102328500 -21747672 - MLT1A LTR MaLR -1 373 237 5 1365 764 161 14 7 chr9 102328564 102328708 -21747464 + L1_Rod LINE L1 3984 4128 -1719 5 1365 1252 222 94 20 chr9 102328704 102329003 -21747169 + Lx9 LINE L1 6542 6862 -782 5 1365 913 263 105 14 chr9 102328998 102329349 -21746823 + Lx9 LINE L1 7262 7644 0 5 1365 845 286 52 26 chr9 102329352 102329739 -21746433 - Arthur1 DNA Tip100 -113 3834 3438 5 1365 621 40 0 0 chr9 102329827 102329903 -21746269 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 5 1365 263 360 11 0 chr9 102329928 102330017 -21746155 - Arthur1 DNA Tip100 -3273 674 585 5 1365 340 328 57 0 chr9 102330081 102330203 -21745969 - Arthur1 DNA Tip100 -3532 415 287 5 1365 236 259 17 0 chr9 102330950 102331008 -21745164 + GA-rich Low_complexity Low_complexity 3 61 0 5 1365 584 116 11 0 chr9 102331009 102331104 -21745068 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 5 1365 246 310 16 22 chr9 102332618 102332708 -21743464 + L2b LINE L2 3284 3387 -39 5 1365 195 42 0 0 chr9 102333118 102333142 -21743030 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 5 1365 475 280 43 31 chr9 102333193 102333355 -21742817 + MER5A DNA MER1_type 24 187 -2 5 1365 342 274 49 69 chr9 102333828 102334032 -21742140 + HAL1 LINE L1 2023 2222 -285 5 1365 409 250 0 43 chr9 102334032 102334220 -21741952 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1365 643 161 0 91 chr9 102334238 102334436 -21741736 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1365 225 214 0 0 chr9 102334436 102334478 -21741694 - B4 SINE B4 0 292 251 5 1365 408 316 80 54 chr9 102334479 102334703 -21741469 + HAL1 LINE L1 2267 2496 -11 5 1365 579 246 47 164 chr9 102335208 102335422 -21740750 + ID_B1 SINE B4 3 191 -33 5 1365 519 17 0 0 chr9 102336549 102336609 -21739563 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1365 22 0 0 0 chr9 102336918 102336940 -21739232 + AT_rich Low_complexity Low_complexity 1 22 0 5 1365 21 0 0 0 chr9 102337094 102337115 -21739057 + GC_rich Low_complexity Low_complexity 1 21 0 5 1365 364 302 57 45 chr9 102337222 102337399 -21738773 + MER117 DNA MER1_type 1 179 -18 5 1365 916 268 154 32 chr9 102338121 102338530 -21737642 + MLT1C LTR MaLR 9 467 0 5 1365 387 145 0 0 chr9 102338813 102338882 -21737290 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1365 360 167 82 12 chr9 102338888 102338973 -21737199 + B3 SINE B2 126 216 0 5 1365 21 0 0 0 chr9 102339321 102339342 -21736830 + AT_rich Low_complexity Low_complexity 1 21 0 5 1365 1141 52 0 0 chr9 102339617 102339753 -21736419 + B1_Mus2 SINE Alu 2 137 -10 5 1365 261 0 0 0 chr9 102339753 102339782 -21736390 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1365 1263 94 0 0 chr9 102340431 102340611 -21735561 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1365 1016 112 0 0 chr9 102340816 102340959 -21735213 + B1_Mus1 SINE Alu 6 148 0 5 1365 949 179 43 34 chr9 102341301 102341509 -21734663 + B3 SINE B2 2 211 -5 5 1365 526 327 92 45 chr9 102341554 102341890 -21734282 + ORR1E LTR MaLR 1 352 -7 5 1365 283 304 143 0 chr9 102341995 102342107 -21734065 + L1MEg2 LINE L1 204 331 -6121 5 1365 413 244 0 0 chr9 102342694 102342780 -21733392 + MTE2b LTR MaLR 15 100 -279 5 1365 975 257 55 48 chr9 102342778 102342879 -21733293 + MTE2b LTR MaLR 58 152 -227 5 1365 2568 77 6 0 chr9 102342879 102343203 -21732969 + ORR1A2 LTR MaLR 1 326 -1 5 1365 975 257 55 48 chr9 102343203 102343391 -21732781 + MTE2b LTR MaLR 153 349 -30 5 1365 367 302 47 0 chr9 102343443 102343549 -21732623 - RSINE1 SINE B4 -2 163 53 5 1365 228 159 0 64 chr9 102343570 102343617 -21732555 + MTE2b LTR MaLR 332 375 -4 5 1365 799 276 88 10 chr9 102343608 102343915 -21732257 - MER58D DNA MER1_type -32 354 24 5 1365 331 319 62 43 chr9 102343941 102344087 -21732085 + L1MEg2 LINE L1 694 843 -5609 5 1365 457 333 92 83 chr9 102344403 102344861 -21731311 - L2b LINE L2 -2 3373 2912 5 1365 819 309 42 12 chr9 102345005 102345264 -21730908 + B4A SINE B4 3 269 -23 5 1365 270 0 0 0 chr9 102345264 102345294 -21730878 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1365 209 287 131 17 chr9 102345356 102345473 -21730699 + L2a LINE L2 2953 3085 -341 5 1365 2148 161 36 6 chr9 102345547 102345903 -21730269 - ORR1B2 LTR MaLR 0 367 1 5 1365 507 367 17 17 chr9 102345933 102346174 -21729998 + L2a LINE L2 2483 2723 -696 5 1365 364 347 46 82 chr9 102346428 102346509 -21729663 + L2a LINE L2 3037 3112 -314 5 1365 1129 198 32 18 chr9 102346509 102346730 -21729442 + URR1B DNA MER1_type 1 224 -1 5 1365 364 347 46 82 chr9 102346730 102347037 -21729135 + L2a LINE L2 3113 3411 -15 5 1365 384 323 39 77 chr9 102348018 102348226 -21727946 - MER52-int LTR ERV1 -23 7068 6869 5 1365 461 318 0 33 chr9 102348389 102348542 -21727630 - RodERV21-int LTR ERV1 -444 4547 4400 5 1365 300 331 62 84 chr9 102348912 102349090 -21727082 + HAL1 LINE L1 94 267 -2240 5 1365 562 277 72 79 chr9 102349201 102349479 -21726693 - RMER15 LTR ERVL 0 575 300 5 1365 511 221 14 62 chr9 102349840 102349985 -21726187 + HAL1 LINE L1 2370 2507 0 5 1365 294 290 219 0 chr9 102349992 102350175 -21725997 - L2 LINE L2 -623 2796 2574 5 1365 186 349 24 12 chr9 102351140 102351224 -21724948 - L2a LINE L2 -4 3422 3338 5 1365 396 103 0 0 chr9 102352735 102352793 -21723379 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1365 219 250 31 15 chr9 102352806 102352871 -21723301 + (TATG)n Simple_repeat Simple_repeat 2 67 0 5 1365 435 261 36 0 chr9 102353083 102353194 -21722978 - B4A SINE B4 -8 284 170 5 1365 444 37 0 0 chr9 102354167 102354221 -21721951 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1365 530 232 36 0 chr9 102354243 102354355 -21721817 + ID_B1 SINE B4 78 193 -31 5 1365 406 235 165 0 chr9 102354252 102354367 -21721805 + B1F2 SINE Alu 6 139 -10 5 1365 335 121 0 17 chr9 102354432 102354491 -21721681 + (GGA)n Simple_repeat Simple_repeat 3 60 0 5 1365 289 246 0 42 chr9 102358393 102358465 -21717707 - ID4 SINE ID -1 82 14 5 1365 293 200 0 44 chr9 102358401 102358469 -21717703 - tRNA-Ala-GCY_ tRNA tRNA -7 68 4 5 1365 339 150 0 0 chr9 102358502 102358562 -21717610 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1365 675 252 97 130 chr9 102358565 102358957 -21717215 + MTE2a LTR MaLR 1 379 0 5 1365 315 0 0 0 chr9 102358990 102359025 -21717147 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1365 708 290 88 12 chr9 102359043 102359294 -21716878 - B4A SINE B4 -22 270 1 5 1365 321 316 84 0 chr9 102359352 102359507 -21716665 - MLT1J LTR MaLR -342 170 3 5 1365 235 286 109 0 chr9 102359705 102359783 -21716389 + ID4 SINE ID 3 83 0 5 1365 315 337 56 31 chr9 102359881 102360077 -21716095 + Charlie1b DNA MER1_type 22 222 -301 5 1365 520 231 0 18 chr9 102360122 102360232 -21715940 - B3 SINE B2 -108 108 1 5 1365 247 96 0 0 chr9 102360644 102360682 -21715490 + Lx LINE L1 5912 5949 -1048 5 1365 399 301 115 6 chr9 102360682 102360856 -21715316 + MER5C DNA MER1_type 80 272 -41 5 1365 249 316 13 0 chr9 102360936 102361012 -21715160 + LTR37A LTR ERV1 6 82 -344 5 1365 239 317 97 34 chr9 102361005 102361086 -21715086 + LTR37A LTR ERV1 199 282 -144 5 1365 270 0 0 0 chr9 102361086 102361116 -21715056 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1365 339 25 0 0 chr9 102361116 102361155 -21715017 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1365 239 317 97 34 chr9 102361155 102361278 -21714894 + LTR37A LTR ERV1 283 416 -10 5 1365 936 72 0 0 chr9 102361346 102361484 -21714688 + (TC)n Simple_repeat Simple_repeat 1 138 0 5 1365 244 184 0 0 chr9 102363682 102363720 -21712452 + MIRc SINE MIR 83 120 -148 5 1365 679 250 49 20 chr9 102364219 102364423 -21711749 + B3 SINE B2 2 211 -5 5 1365 1108 143 122 0 chr9 102365902 102366098 -21710074 - URR1A DNA MER1_type -2 224 5 5 1365 3677 52 0 0 chr9 102366298 102366738 -21709434 + L1_Mus1 LINE L1 6128 6567 0 5 1365 255 125 0 0 chr9 102366824 102366864 -21709308 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1365 234 320 40 32 chr9 102367087 102367213 -21708959 - B1F1 SINE Alu -13 136 10 5 170 541 266 136 0 chr9 102367127 102367281 -21708891 - ID_B1 SINE B4 -48 176 2 5 1366 372 22 0 0 chr9 102367448 102367493 -21708679 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1366 189 74 0 0 chr9 102368284 102368311 -21707861 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 5 1366 228 290 95 48 chr9 102368440 102368545 -21707627 + PB1D10 SINE Alu 1 110 -7 5 1366 249 193 0 0 chr9 102369082 102369139 -21707033 + CT-rich Low_complexity Low_complexity 6 62 0 5 1366 741 150 0 0 chr9 102369141 102369321 -21706851 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1366 339 291 117 31 chr9 102369545 102369708 -21706464 + MLT1K LTR MaLR 339 515 -80 5 1366 441 135 0 0 chr9 102369708 102369797 -21706375 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 1366 184 234 247 0 chr9 102369949 102370026 -21706146 + MIRb SINE MIR 85 180 -88 5 1366 25 0 0 0 chr9 102370124 102370149 -21706023 + AT_rich Low_complexity Low_complexity 1 25 0 5 1366 864 220 54 16 chr9 102370274 102370459 -21705713 - B3A SINE B2 0 198 7 5 1366 193 300 62 62 chr9 102370762 102370858 -21705314 - L3b LINE CR1 -185 297 202 5 1366 225 0 0 0 chr9 102371822 102371847 -21704325 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 5 1366 544 223 45 15 chr9 102372678 102372810 -21703362 - MLT1B LTR MaLR -254 136 1 5 1366 198 217 237 25 chr9 102373071 102373171 -21703001 + MIRb SINE MIR 64 181 -87 5 1366 39124 5 0 0 chr9 102373196 102378782 -21697390 + L1Md_A LINE L1 1 5586 -297 5 1366 9167 4 0 0 chr9 102378782 102379778 -21696394 + L1Md_A LINE L1 5587 6582 0 5 1366 509 215 18 12 chr9 102379917 102380082 -21696090 + (CATA)n Simple_repeat Simple_repeat 4 169 0 5 1366 526 239 131 21 chr9 102380370 102380515 -21695657 + MIR SINE MIR 79 239 -23 5 1366 602 296 80 30 chr9 102382017 102382316 -21693856 - L1MB8 LINE L1 -84 6094 5781 5 1366 2678 278 103 22 chr9 102382350 102383728 -21692444 - L1MB8 LINE L1 -603 5571 4076 5 1366 1649 200 99 0 chr9 102384034 102384379 -21691793 + MTEb LTR MaLR 1 379 0 5 1366 696 341 68 39 chr9 102384948 102385507 -21690665 + Lx8 LINE L1 6850 7424 -49 5 1366 513 244 0 0 chr9 102385536 102385712 -21690460 + (TG)n Simple_repeat Simple_repeat 2 177 0 5 1366 3032 133 129 6 chr9 102386078 102386511 -21689661 - RLTR31A_Mm LTR ERVK 0 584 88 6 1366 396 0 0 0 chr9 102386511 102386555 -21689617 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 1366 3032 133 129 6 chr9 102386555 102386641 -21689531 - RLTR31A_Mm LTR ERVK -497 87 2 6 1366 207 265 20 0 chr9 102387089 102387138 -21689034 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1366 613 247 134 29 chr9 102387186 102387432 -21688740 + RLTR10A LTR ERVK 140 411 0 6 1366 452 189 35 70 chr9 102387449 102387563 -21688609 + RLTR10-int LTR ERVK 319 428 -1559 6 1366 721 121 0 24 chr9 102387621 102387748 -21688424 + IAP-d-int LTR ERVK 95 218 -2594 6 1366 442 158 68 21 chr9 102387768 102387910 -21688262 + IAP-d-int LTR ERVK 59 141 -6401 6 1366 446 303 68 53 chr9 102387909 102388303 -21687869 + IAP-d-int LTR ERVK 1994 2393 -4149 6 1366 854 344 44 45 chr9 102388350 102389345 -21686827 + IAP-d-int LTR ERVK 3268 4261 -2281 6 1366 1817 210 37 26 chr9 102389426 102389900 -21686272 + RLTR45-int LTR ERVK 6522 7042 -202 6 1366 441 245 191 55 chr9 102389941 102390161 -21686011 + RLTR10A LTR ERVK 162 411 0 6 1366 1428 223 97 23 chr9 102390296 102390687 -21685485 + MTD LTR MaLR 1 405 -14 6 1366 264 271 17 0 chr9 102390741 102390800 -21685372 - L1M5 LINE L1 -617 5623 5564 6 1366 920 217 178 56 chr9 102390817 102390864 -21685308 - MTEa LTR MaLR -4 375 328 6 1366 234 0 0 0 chr9 102390864 102390890 -21685282 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1366 1022 95 0 0 chr9 102390890 102391027 -21685145 - B1_Mus2 SINE Alu -9 138 2 6 1366 920 217 178 56 chr9 102391027 102391281 -21684891 - MTEa LTR MaLR -52 327 37 6 1366 308 280 56 9 chr9 102391645 102391753 -21684419 - MLT1A0 LTR MaLR -11 354 242 6 1366 237 330 53 11 chr9 102391895 102391990 -21684182 - MLT1A0 LTR MaLR -275 99 1 6 1366 540 89 0 0 chr9 102392589 102392668 -21683504 + (TGG)n Simple_repeat Simple_repeat 3 81 0 6 1366 1984 171 105 3 chr9 102392675 102393057 -21683115 + MTC LTR MaLR 1 421 0 6 1366 2414 194 76 24 chr9 102393065 102393618 -21682554 + RMER17B LTR ERVK 1 582 -376 6 1366 497 194 160 24 chr9 102393661 102393830 -21682342 + RMER17B LTR ERVK 738 904 -4 6 1366 311 96 19 0 chr9 102393945 102393997 -21682175 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1366 368 296 86 22 chr9 102394166 102394332 -21681840 + MIRb SINE MIR 2 171 -97 6 1366 240 111 0 0 chr9 102394632 102394668 -21681504 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 6 1366 211 270 14 0 chr9 102395072 102395146 -21681026 + CT-rich Low_complexity Low_complexity 2 76 0 6 1366 475 188 13 34 chr9 102395199 102395348 -21680824 + CT-rich Low_complexity Low_complexity 3 148 0 6 1366 465 76 0 37 chr9 102396097 102396179 -21679993 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1366 904 254 135 35 chr9 102398322 102398649 -21677523 - MLT1A0 LTR MaLR -8 459 2 6 1366 249 155 0 0 chr9 102398665 102398723 -21677449 + CT-rich Low_complexity Low_complexity 1 58 0 6 1366 249 200 48 36 chr9 102398972 102399055 -21677117 + (TGGA)n Simple_repeat Simple_repeat 1 84 0 6 1366 265 221 68 23 chr9 102399849 102399937 -21676235 + MIRc SINE MIR 65 156 -112 6 1366 341 22 22 0 chr9 102400805 102400851 -21675321 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1366 283 197 48 32 chr9 102400896 102400959 -21675213 - B4A SINE B4 0 292 229 6 1366 204 122 0 0 chr9 102401503 102401544 -21674628 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1366 188 138 0 0 chr9 102401961 102401990 -21674182 - L2c LINE L2 -14 3373 3345 6 1366 517 257 21 35 chr9 102402224 102402369 -21673803 + B4 SINE B4 1 143 -149 6 1366 360 0 0 0 chr9 102402475 102402515 -21673657 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1366 627 285 5 26 chr9 102402631 102402822 -21673350 + L1M5 LINE L1 5529 5715 -409 6 1366 246 315 17 35 chr9 102403543 102403658 -21672514 + LTR84b LTR ERVL 482 594 -167 6 1366 3128 231 92 34 chr9 102403815 102404735 -21671437 - RCHARR1 DNA MER1_type 0 974 1 6 1366 230 353 76 0 chr9 102405332 102405451 -21670721 + LTR84b LTR ERVL 626 753 -4 6 1366 317 254 0 0 chr9 102405866 102405929 -21670243 + MER20 DNA MER1_type 123 185 -34 6 1366 279 365 46 29 chr9 102406205 102406380 -21669792 - ORR1E LTR MaLR 0 379 202 6 1366 347 284 16 87 chr9 102406580 102406707 -21669465 - ORR1E LTR MaLR -241 118 1 6 1366 1284 155 0 46 chr9 102406729 102406966 -21669206 - URR1A DNA MER1_type 0 226 1 6 1366 549 0 0 0 chr9 102407074 102407135 -21669037 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1366 621 40 0 0 chr9 102407685 102407761 -21668411 + (TC)n Simple_repeat Simple_repeat 2 77 0 6 1366 297 0 0 0 chr9 102409226 102409259 -21666913 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1366 261 340 10 10 chr9 102410730 102410831 -21665341 - MLT1N2 LTR MaLR -106 456 356 6 1366 276 268 0 40 chr9 102410956 102411030 -21665142 - MLT1N2 LTR MaLR -380 182 112 6 1366 26 0 0 0 chr9 102413022 102413048 -21663124 + AT_rich Low_complexity Low_complexity 1 26 0 6 1366 987 128 0 0 chr9 102413237 102413385 -21662787 + B1_Mus1 SINE Alu 1 148 0 6 1366 261 0 0 0 chr9 102413385 102413414 -21662758 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1366 249 33 0 0 chr9 102414921 102414951 -21661221 + (CCCCCA)n Simple_repeat Simple_repeat 2 31 0 6 1366 714 312 121 34 chr9 102416573 102416928 -21659244 - MLT1D LTR MaLR -41 464 79 6 1366 215 269 103 15 chr9 102417004 102417072 -21659100 + ID4 SINE ID 1 74 -9 6 1366 182 331 63 24 chr9 102417269 102417396 -21658776 - L2 LINE L2 -447 2972 2841 6 1366 245 311 35 77 chr9 102417917 102418060 -21658112 - MIRb SINE MIR -127 141 5 6 1366 233 309 0 0 chr9 102418694 102418762 -21657410 - MER117 DNA MER1_type -127 70 3 6 1366 765 291 30 58 chr9 102420145 102420440 -21655732 + B4A SINE B4 2 288 -4 6 1366 23 33 0 0 chr9 102420445 102420475 -21655697 + AT_rich Low_complexity Low_complexity 1 30 0 6 1366 688 265 75 49 chr9 102420974 102421240 -21654932 - MLT1H LTR MaLR -196 353 81 6 1366 315 348 67 49 chr9 102421265 102421489 -21654683 + L1M5 LINE L1 5501 5728 -396 6 1366 431 327 18 55 chr9 102421623 102421895 -21654277 - L1MEf LINE L1 -3518 3026 2765 6 1366 494 318 224 14 chr9 102421878 102422583 -21653589 - L1MEf LINE L1 -4634 2006 1154 6 1366 243 324 59 85 chr9 102422806 102422924 -21653248 - L1MEf LINE L1 -5871 676 562 6 1366 466 152 8 31 chr9 102422933 102423062 -21653110 + GA-rich Low_complexity Low_complexity 3 128 0 6 1366 274 352 104 57 chr9 102423115 102423431 -21652741 - L1MEf LINE L1 -6119 428 98 6 1366 899 274 18 54 chr9 102423801 102424094 -21652078 - ORR1E LTR MaLR -88 282 1 6 1366 278 318 98 43 chr9 102424220 102424404 -21651768 - MIRb SINE MIR -35 233 40 6 1366 204 281 18 0 chr9 102425201 102425258 -21650914 + MIR SINE MIR 91 148 -60 6 1366 311 266 97 35 chr9 102425791 102425904 -21650268 + MER117 DNA MER1_type 43 162 -35 6 1366 781 271 41 18 chr9 102426005 102426223 -21649949 + ID_B1 SINE B4 1 223 -1 6 1366 245 289 79 0 chr9 102426256 102426332 -21649840 + ID4_ SINE ID 1 82 -1 6 1366 1442 219 51 9 chr9 102427962 102428298 -21647874 - ORR1E LTR MaLR -5 354 5 6 1366 1551 198 127 5 chr9 102428350 102428721 -21647451 - MTD LTR MaLR 0 419 4 6 1366 778 172 0 30 chr9 102429861 102429993 -21646179 - B1_Mur1 SINE Alu -9 140 13 6 1366 213 319 0 14 chr9 102431687 102431757 -21644415 - ID4 SINE ID -7 76 8 6 1366 312 223 87 31 chr9 102431771 102431871 -21644301 - PB1D7 SINE Alu -13 107 1 6 1366 207 0 0 0 chr9 102431896 102431919 -21644253 + (TTAG)n Simple_repeat Simple_repeat 2 24 0 6 1366 545 244 126 0 chr9 102431961 102432088 -21644084 - RSINE1 SINE B4 -20 145 3 6 1366 1070 115 49 11 chr9 102432630 102432814 -21643358 - B2_Mm2 SINE B2 -4 191 1 6 1366 430 284 153 82 chr9 102432834 102433187 -21642985 - Lx8 LINE L1 -2 7471 7094 6 1366 281 327 27 9 chr9 102433257 102433368 -21642804 + MIRm SINE MIR 43 155 -121 6 1366 320 288 0 50 chr9 102434537 102434636 -21641536 - ID4_ SINE ID -52 100 7 6 1366 427 291 26 0 chr9 102434642 102434759 -21641413 - B1F SINE Alu -7 142 23 6 1366 22 0 0 0 chr9 102436262 102436284 -21639888 + AT_rich Low_complexity Low_complexity 1 22 0 6 1366 236 296 25 0 chr9 102437130 102437211 -21638961 - ID4_ SINE ID 0 83 1 6 1366 2459 174 32 6 chr9 102437586 102438055 -21638117 - RLTR11A2 LTR ERVK -46 481 1 6 1366 2631 141 7 5 chr9 102438972 102439392 -21636780 - MTC LTR MaLR 0 421 1 6 1366 243 0 0 0 chr9 102442001 102442028 -21634144 + (CACCC)n Simple_repeat Simple_repeat 2 28 0 6 1366 259 187 80 0 chr9 102442764 102442914 -21633258 + (TCCA)n Simple_repeat Simple_repeat 1 162 0 6 1366 570 221 44 30 chr9 102443535 102443670 -21632502 + B3A SINE B2 1 137 -61 6 1366 686 113 0 9 chr9 102443677 102443793 -21632379 + (CA)n Simple_repeat Simple_repeat 2 116 0 6 1366 310 273 155 8 chr9 102444050 102444179 -21631993 + MER63B DNA AcHobo 289 436 0 6 1366 180 0 0 0 chr9 102446934 102446954 -21629218 + (GGGTG)n Simple_repeat Simple_repeat 4 23 0 6 1366 261 210 31 46 chr9 102448110 102448175 -21627997 + L3b LINE CR1 221 284 -198 6 1366 201 261 0 21 chr9 102449374 102449428 -21626744 + L3 LINE CR1 4436 4500 -8 6 1366 450 286 0 0 chr9 102450095 102450186 -21625986 + 5S rRNA rRNA 1 91 -30 6 1366 444 211 84 39 chr9 102450843 102450966 -21625206 - Lx7 LINE L1 0 7696 7563 6 1366 846 161 0 86 chr9 102450966 102451129 -21625043 + B1_Mur4 SINE Alu 1 149 -1 6 1366 444 211 84 39 chr9 102451129 102451183 -21624989 - Lx7 LINE L1 -134 7562 7511 6 1366 986 82 37 0 chr9 102451217 102451351 -21624821 + B2_Mm2 SINE B2 1 139 -56 6 1366 1047 245 16 72 chr9 102451370 102451674 -21624498 - Lx7 LINE L1 -283 7413 7127 6 1366 699 270 109 23 chr9 102452530 102452795 -21623377 - B4A SINE B4 -4 288 1 6 1366 890 235 120 23 chr9 102452917 102453183 -21622989 + B4 SINE B4 1 292 0 6 1366 229 330 10 30 chr9 102453222 102453322 -21622850 + MER117 DNA MER1_type 18 115 -82 6 1366 965 132 118 12 chr9 102453711 102453872 -21622300 - L1VL2 LINE L1 -6092 243 66 6 1366 1095 257 8 10 chr9 102455521 102455800 -21620372 - RMER1C Other Other -476 866 600 6 1366 225 203 17 0 chr9 102455883 102455942 -21620230 - L1_Mur3 LINE L1 -3694 2186 2127 6 1366 454 239 48 77 chr9 102456780 102456948 -21619224 + RSINE1 SINE B4 3 165 0 6 1366 216 0 0 0 chr9 102457658 102457682 -21618490 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1366 2462 158 2 9 chr9 102457728 102458150 -21618022 - MTC LTR MaLR 0 421 3 6 1366 748 92 145 47 chr9 102458154 102458326 -21617846 - MTC-int LTR MaLR -2 1256 1068 6 1366 768 118 0 16 chr9 102458327 102458448 -21617724 + ORR1A4 LTR MaLR 122 240 -89 6 1366 3584 209 39 87 chr9 102458947 102459939 -21616233 - MTC-int LTR MaLR -153 945 1 6 1366 2550 169 0 10 chr9 102459943 102460360 -21615812 - MTC LTR MaLR -8 413 1 6 1366 227 345 86 34 chr9 102460427 102460544 -21615628 + RSINE1 SINE B4 43 165 0 6 1366 310 327 37 9 chr9 102460606 102460714 -21615458 + MLT1F1 LTR MaLR 100 210 -359 7 1366 286 315 154 74 chr9 102460754 102460861 -21615311 + MLT1F1 LTR MaLR 381 495 -74 7 1366 950 214 64 10 chr9 102460861 102461064 -21615108 + B3 SINE B2 3 216 0 7 1366 286 315 154 74 chr9 102461064 102461131 -21615041 + MLT1F1 LTR MaLR 496 569 0 7 1366 371 272 97 0 chr9 102461207 102461310 -21614862 + PB1D10 SINE Alu 2 114 -3 7 1366 468 254 113 25 chr9 102461439 102461714 -21614458 + HAL1 LINE L1 1476 1774 -733 7 1366 468 292 50 19 chr9 102462137 102462399 -21613773 - L1M5 LINE L1 -1745 4401 4132 7 1366 832 292 114 40 chr9 102462485 102462548 -21613624 - L1M5 LINE L1 -2320 3826 3764 7 1366 612 62 0 0 chr9 102462548 102462629 -21613543 + (GTTTG)n Simple_repeat Simple_repeat 2 82 0 7 1366 761 204 7 0 chr9 102462629 102462766 -21613406 - B1F SINE Alu -11 138 1 7 1366 832 292 114 40 chr9 102462766 102463228 -21612944 - L1M5 LINE L1 -2383 3763 3262 7 1366 697 275 80 39 chr9 102463458 102463737 -21612435 - B4 SINE B4 -18 274 7 7 1366 822 284 85 73 chr9 102463755 102464180 -21611992 + RLTR23 LTR ERV1 1 430 0 7 1366 273 89 0 0 chr9 102464182 102464227 -21611945 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1366 438 301 79 18 chr9 102464311 102464538 -21611634 - L1MEe LINE L1 -696 6303 6063 7 1366 255 229 43 0 chr9 102464638 102464708 -21611464 - L1_Mur2 LINE L1 -599 5278 5206 7 1366 307 351 58 11 chr9 102464745 102464935 -21611237 - L1MEe LINE L1 -945 5900 5702 7 1366 1324 299 27 50 chr9 102465420 102466118 -21610054 - L1MEe LINE L1 -1141 5704 5023 7 1366 243 0 0 0 chr9 102466118 102466145 -21610027 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 7 1366 641 107 19 0 chr9 102466222 102466325 -21609847 + (TTTC)n Simple_repeat Simple_repeat 4 108 0 7 1366 200 111 28 0 chr9 102466323 102466359 -21609813 + (TCC)n Simple_repeat Simple_repeat 1 37 0 7 1366 611 234 80 0 chr9 102466359 102466496 -21609676 - B1_Mur1 SINE Alu 0 149 2 7 1366 246 268 0 0 chr9 102466499 102466555 -21609617 - B4 SINE B4 -39 253 198 7 1366 3086 19 3 0 chr9 102466544 102466897 -21609275 + MTA_Mm LTR MaLR 36 396 0 7 1366 9213 36 6 1 chr9 102466904 102467996 -21608176 + MTA_Mm-int LTR MaLR 1 1098 0 7 1366 3564 20 2 0 chr9 102467996 102468391 -21607781 + MTA_Mm LTR MaLR 1 396 0 7 1366 587 259 12 61 chr9 102468391 102468554 -21607618 - B4A SINE B4 -83 209 50 7 1366 839 275 61 61 chr9 102468584 102468963 -21607209 - L1MEe LINE L1 -1891 4954 4576 7 1366 450 258 123 16 chr9 102469217 102469339 -21606833 + Lx8 LINE L1 6820 6954 -519 7 1366 244 227 0 15 chr9 102469505 102469572 -21606600 + CT-rich Low_complexity Low_complexity 1 66 0 7 1366 630 302 173 47 chr9 102469698 102470149 -21606023 + Lx8 LINE L1 6961 7468 -5 7 1366 739 296 59 34 chr9 102470364 102470773 -21605399 - L1_Rod LINE L1 -3350 2497 2079 7 1366 1403 147 164 25 chr9 102470775 102471055 -21605117 + RMER6C LTR ERVK 1 319 -371 7 1366 246 294 57 100 chr9 102471109 102471249 -21604923 - RLTR41 LTR ERV1 -62 384 251 7 1366 390 42 0 0 chr9 102471747 102471795 -21604377 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1366 1734 122 23 43 chr9 102471799 102472098 -21604074 + RMER6C LTR ERVK 398 690 0 7 1366 301 315 36 89 chr9 102472320 102472655 -21603517 - L1MEe LINE L1 -4268 2581 2197 7 1366 305 320 62 0 chr9 102473875 102473972 -21602200 - L1M5 LINE L1 -2376 3770 3668 7 1366 322 347 72 0 chr9 102474051 102474218 -21601954 - L1MB8 LINE L1 0 6184 6006 7 1366 343 309 57 25 chr9 102474292 102474502 -21601670 - L1MB8 LINE L1 -289 5884 5665 7 1366 327 85 0 0 chr9 102474502 102474549 -21601623 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1366 576 246 39 28 chr9 102474616 102474796 -21601376 + L1M4 LINE L1 5256 5437 -741 7 1366 326 279 60 65 chr9 102474993 102475177 -21600995 - ORR1E LTR MaLR -168 191 9 7 1366 304 252 174 6 chr9 102475183 102475350 -21600822 + L1M4 LINE L1 5435 5637 -707 7 1366 1261 245 21 17 chr9 102475765 102476056 -21600116 - B4A SINE B4 0 292 1 7 1366 391 221 128 0 chr9 102476061 102476147 -21600025 - PB1D10 SINE Alu -8 109 13 7 1366 214 194 164 14 chr9 102476770 102476856 -21599316 - MIRb SINE MIR -172 104 15 7 1366 1288 187 125 108 chr9 102477304 102477390 -21598782 + ORR1D2 LTR MaLR 1 65 -305 7 1366 1661 239 55 5 chr9 102477390 102477789 -21598383 + MTD LTR MaLR 1 419 0 7 1366 1288 187 125 108 chr9 102477789 102478062 -21598110 + ORR1D2 LTR MaLR 66 366 -4 7 1366 979 294 68 15 chr9 102478120 102478386 -21597786 + B4A SINE B4 2 281 -11 7 1366 465 19 0 0 chr9 102478390 102478444 -21597728 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1366 2173 105 9 64 chr9 102478478 102478823 -21597349 + ORR1A3 LTR MaLR 1 326 0 7 1366 259 143 34 51 chr9 102479049 102479108 -21597064 + MLT1A1 LTR MaLR 305 362 -46 7 1366 516 272 0 10 chr9 102479113 102479216 -21596956 + ORR1E LTR MaLR 2 103 -256 7 1366 1442 179 129 66 chr9 102479216 102479549 -21596623 + MTD LTR MaLR 1 354 -65 7 1366 1517 208 41 52 chr9 102479549 102479914 -21596258 + ORR1D1 LTR MaLR 1 361 -13 7 1366 907 256 52 59 chr9 102479910 102480180 -21595992 + ORR1E LTR MaLR 89 356 -3 7 1366 1390 82 11 0 chr9 102480629 102480813 -21595359 - B2_Mm1t SINE B2 -7 186 1 7 1366 1946 116 3 113 chr9 102481408 102481778 -21594394 - ORR1A4 LTR MaLR 0 329 1 7 1366 898 166 125 16 chr9 102482049 102482233 -21593939 + B3 SINE B2 5 208 -8 7 1366 1347 294 24 0 chr9 102482416 102482797 -21593375 + Charlie4a DNA MER1_type 91 480 -28 7 1366 476 254 26 60 chr9 102483560 102483576 -21592596 + ID_B1 SINE B4 78 222 -1 7 1366 620 218 52 8 chr9 102483576 102483710 -21592462 + B1F SINE Alu 10 149 0 7 1366 429 310 48 48 chr9 102483735 102483923 -21592249 + Lx8 LINE L1 7136 7328 -145 7 1366 195 100 0 0 chr9 102483923 102483953 -21592219 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1366 429 310 48 48 chr9 102483953 102483974 -21592198 + Lx8 LINE L1 7329 7345 -128 7 1366 768 77 0 0 chr9 102484040 102484144 -21592028 + (TA)n Simple_repeat Simple_repeat 2 105 0 7 1366 252 341 88 46 chr9 102484167 102484407 -21591765 - L1MB8 LINE L1 -44 6134 5885 7 1366 840 299 96 16 chr9 102484425 102484874 -21591298 - L1MB8 LINE L1 -513 5831 5348 7 1366 189 0 0 0 chr9 102485005 102485026 -21591146 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1366 265 365 35 49 chr9 102485158 102485302 -21590870 - Charlie4z DNA MER1_type -2 165 24 7 1366 476 292 65 30 chr9 102486242 102486443 -21589729 - MIR SINE MIR -32 230 23 7 1366 224 274 136 64 chr9 102487657 102487782 -21588390 - L2 LINE L2 -494 2925 2792 7 1366 236 323 173 24 chr9 102488300 102488468 -21587704 - L2 LINE L2 -1485 1934 1742 7 1366 239 305 146 0 chr9 102489835 102489917 -21586255 + MER82 DNA MER2_type 1 94 -559 7 1366 224 309 50 30 chr9 102489949 102490049 -21586123 - MIRc SINE MIR -115 153 52 7 1366 225 65 0 0 chr9 102490490 102490521 -21585651 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1366 22 0 0 0 chr9 102490989 102491011 -21585161 + AT_rich Low_complexity Low_complexity 1 22 0 7 1366 1516 53 27 0 chr9 102491726 102491914 -21584258 + B2_Mm1t SINE B2 1 193 0 7 1366 1430 54 22 5 chr9 102491931 102492116 -21584056 + B2_Mm2 SINE B2 2 189 -6 7 1366 1273 93 27 6 chr9 102492421 102492604 -21583568 + B2_Mm2 SINE B2 1 187 -8 7 1366 384 22 0 0 chr9 102492605 102492650 -21583522 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 7 1366 857 155 7 0 chr9 102493998 102494140 -21582032 + URR1B DNA MER1_type 83 225 0 7 1366 266 333 13 0 chr9 102494522 102494597 -21581575 + (CCCA)n Simple_repeat Simple_repeat 1 76 0 7 1366 823 274 95 29 chr9 102494693 102494967 -21581205 + B4A SINE B4 1 292 0 7 1366 26 0 0 0 chr9 102495003 102495029 -21581143 + AT_rich Low_complexity Low_complexity 1 26 0 7 1366 254 301 64 16 chr9 102495029 102495154 -21581018 - HAL1 LINE L1 -2355 152 22 7 1366 23 0 0 0 chr9 102495537 102495560 -21580612 + AT_rich Low_complexity Low_complexity 1 23 0 7 1366 529 192 77 0 chr9 102495810 102495914 -21580258 - PB1D10 SINE Alu -2 115 4 7 1366 280 277 0 0 chr9 102495858 102495923 -21580249 - B4 SINE B4 -148 144 80 7 1366 415 283 17 86 chr9 102497131 102497305 -21578867 - B4A SINE B4 -130 162 1 7 1367 313 325 31 39 chr9 102498718 102498846 -21577326 + B1F2 SINE Alu 17 143 -6 7 1367 243 140 0 85 chr9 102498849 102498896 -21577276 + ID4 SINE ID 2 44 -39 7 1367 463 281 113 49 chr9 102498933 102499180 -21576992 + Lx8 LINE L1 7201 7463 -10 7 1367 214 196 0 19 chr9 102499479 102499531 -21576641 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1367 731 308 39 63 chr9 102499585 102499869 -21576303 + B4A SINE B4 8 284 -8 7 1367 225 143 0 0 chr9 102500000 102500035 -21576137 + PB1D10 SINE Alu 63 97 -20 1 1367 289 227 186 0 chr9 102500073 102500170 -21576002 - PB1D10 SINE Alu 0 117 3 2 1367 970 160 193 0 chr9 102501557 102501738 -21574434 + B3 SINE B2 1 216 0 3 1367 745 162 0 14 chr9 102502256 102502394 -21573778 + B1_Mus1 SINE Alu 12 147 -1 4 1367 209 119 24 0 chr9 102502804 102502846 -21573326 + (CTATG)n Simple_repeat Simple_repeat 3 45 0 5 1367 1123 126 0 55 chr9 102503070 102503271 -21572901 + B2_Mm2 SINE B2 2 191 -4 6 1367 631 243 131 50 chr9 102504161 102504360 -21571812 + ID_B1 SINE B4 2 216 -8 7 1367 218 156 22 0 chr9 102504361 102504406 -21571766 + (TAA)n Simple_repeat Simple_repeat 3 48 0 8 1367 225 0 0 0 chr9 102505903 102505928 -21570244 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1367 3394 42 2 118 chr9 102506490 102507000 -21569172 + L1Md_F2 LINE L1 6132 6582 0 1 1367 243 241 52 52 chr9 102507048 102507241 -21568931 + MER33 DNA MER1_type 41 233 -91 1 1367 42 20 0 0 chr9 102507241 102507290 -21568882 + AT_rich Low_complexity Low_complexity 1 49 0 1 1367 411 269 98 17 chr9 102508411 102508585 -21567587 + B3 SINE B2 23 210 -6 1 1367 242 259 0 0 chr9 102508716 102508774 -21567398 + ID4_ SINE ID 10 67 -16 1 1367 1251 34 0 0 chr9 102509269 102509415 -21566757 + B1_Mus1 SINE Alu 3 148 0 1 1367 439 95 13 13 chr9 102509416 102509491 -21566681 + (GAAA)n Simple_repeat Simple_repeat 1 75 0 1 1367 315 0 0 0 chr9 102510591 102510626 -21565546 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 1 1367 308 291 73 22 chr9 102510680 102510954 -21565218 + L1M2c LINE L1 1795 2056 -4733 1 1367 230 333 0 0 chr9 102511040 102511100 -21565072 + ID_B1 SINE B4 84 143 -81 1 1367 902 154 71 6 chr9 102511100 102511283 -21564889 + B2_Mm2 SINE B2 1 195 0 2 1367 256 306 0 0 chr9 102511286 102511358 -21564814 + L1_Mur2 LINE L1 2175 2246 -3631 2 1367 385 250 17 139 chr9 102511358 102511573 -21564599 + L1M2c LINE L1 4384 4609 -2176 1 1367 2981 176 94 27 chr9 102511580 102512218 -21563954 + RMER1B Other Other 373 1053 -13 2 1367 941 157 14 0 chr9 102512228 102512375 -21563797 + B1_Mur4 SINE Alu 1 149 -1 2 1367 831 278 67 120 chr9 102512378 102512997 -21563175 + L1M2c LINE L1 4581 5183 -1336 1 1367 180 380 99 27 chr9 102512999 102513261 -21562911 - L2 LINE L2 -2495 924 644 2 1367 1223 48 0 0 chr9 102513273 102513420 -21562752 + B1_Mus1 SINE Alu 2 148 0 2 1367 2530 118 31 8 chr9 102513587 102513972 -21562200 + ORR1B1 LTR MaLR 1 394 0 2 1367 4620 99 37 70 chr9 102514127 102514964 -21561208 + RMER17D2 LTR ERVK 1 809 0 2 1367 554 245 107 20 chr9 102515899 102516095 -21560077 + ID_B1 SINE B4 3 215 -9 2 1367 453 289 48 21 chr9 102516418 102516626 -21559546 - B3 SINE B2 0 216 7 2 1367 561 262 27 7 chr9 102516694 102516844 -21559328 - RSINE1 SINE B4 -11 154 2 3 1367 585 72 0 48 chr9 102516869 102516972 -21559200 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 3 1367 825 153 42 0 chr9 102516972 102517116 -21559056 - B1_Mur4 SINE Alu 0 150 1 3 1367 1126 103 0 0 chr9 102517181 102517327 -21558845 + B1_Mus1 SINE Alu 2 147 -1 3 1367 268 230 90 22 chr9 102517720 102517809 -21558363 - L1M5 LINE L1 -3269 2877 2783 3 1367 743 259 168 28 chr9 102518100 102518493 -21557679 - L1M5 LINE L1 -3212 2934 2487 3 1367 853 235 43 5 chr9 102518856 102519044 -21557128 - B3 SINE B2 -20 196 2 3 1367 1110 88 114 29 chr9 102519147 102519322 -21556850 + B2_Mm2 SINE B2 1 190 -5 3 1367 210 329 25 0 chr9 102519885 102519964 -21556208 - ID4 SINE ID 0 83 3 3 1367 247 231 90 30 chr9 102520030 102520097 -21556075 - tRNA-Ala-GCY_ tRNA tRNA -1 74 4 3 1367 266 303 15 0 chr9 102520040 102520106 -21556066 - ID4_ SINE ID -11 72 6 3 1367 346 343 14 50 chr9 102520222 102520363 -21555809 - B4A SINE B4 -88 136 1 4 1367 993 181 110 16 chr9 102520483 102520674 -21555498 + B3 SINE B2 2 210 -6 4 1367 374 57 0 19 chr9 102520683 102520737 -21555435 + (GAAAA)n Simple_repeat Simple_repeat 4 56 0 4 1367 855 143 30 0 chr9 102520757 102520890 -21555282 + B1_Mur4 SINE Alu 5 141 -9 4 1367 207 100 0 0 chr9 102520891 102520921 -21555251 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1367 189 0 0 0 chr9 102520923 102520944 -21555228 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 4 1367 646 196 42 42 chr9 102522356 102522500 -21553672 - B1_Mur1 SINE Alu -5 144 1 4 1367 389 286 29 0 chr9 102522548 102522653 -21553519 - B3A SINE B2 -90 108 1 4 1367 599 261 146 27 chr9 102523195 102523380 -21552792 + B3 SINE B2 5 211 -5 4 1367 187 236 269 19 chr9 102524011 102524119 -21552053 + MIR3 SINE MIR 65 199 -9 4 1367 1146 69 0 14 chr9 102524189 102524336 -21551836 - B1_Mus1 SINE Alu -2 146 2 5 1367 22 0 0 0 chr9 102524360 102524382 -21551790 + AT_rich Low_complexity Low_complexity 1 22 0 5 1367 360 133 17 0 chr9 102525418 102525478 -21550694 + ID_B1 SINE B4 109 169 -55 5 1367 323 171 98 0 chr9 102525478 102525500 -21550672 + PB1D10 SINE Alu 28 117 0 5 1367 1339 83 39 11 chr9 102525541 102525723 -21550449 + B2_Mm2 SINE B2 1 187 -8 5 1367 198 0 0 0 chr9 102525762 102525784 -21550388 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 5 1367 470 245 86 7 chr9 102525879 102526031 -21550141 + L1MC5 LINE L1 6974 7137 -824 5 1367 386 276 24 9 chr9 102526365 102526492 -21549680 + MER3 DNA MER1_type 11 139 -70 5 1367 549 85 0 0 chr9 102526650 102526732 -21549440 + L1_Mus3 LINE L1 6541 6622 -16 5 1367 229 109 43 0 chr9 102526732 102526778 -21549394 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1367 1263 14 7 0 chr9 102527399 102527545 -21548627 + B1_Mus2 SINE Alu 1 147 0 6 1367 432 209 139 0 chr9 102527690 102527805 -21548367 + B1_Mur2 SINE Alu 1 131 -18 6 1367 21 89 0 0 chr9 102528459 102528515 -21547657 + GC_rich Low_complexity Low_complexity 1 56 0 6 1367 676 253 259 13 chr9 102529847 102530075 -21546097 - B4A SINE B4 -8 284 1 6 1367 725 186 0 8 chr9 102530467 102530597 -21545575 + RSINE1 SINE B4 3 131 -34 6 1367 899 281 127 82 chr9 102530643 102531232 -21544940 + RLTR18 LTR ERVK 1 616 0 6 1367 428 260 173 13 chr9 102531232 102531388 -21544784 + ID_B1 SINE B4 4 184 -40 6 1367 299 245 122 41 chr9 102531305 102531403 -21544769 + PB1D10 SINE Alu 11 116 -1 6 1367 616 283 30 50 chr9 102532463 102532486 -21543686 - B3A SINE B2 0 198 182 6 1367 381 75 0 0 chr9 102532486 102532539 -21543633 + (TATG)n Simple_repeat Simple_repeat 2 54 0 6 1367 616 283 30 50 chr9 102532539 102532716 -21543456 - B3A SINE B2 -17 181 2 6 1367 891 193 25 3 chr9 102532722 102532931 -21543241 - B3A SINE B2 0 216 1 7 1367 233 303 138 12 chr9 102533387 102533554 -21542618 - MIRb SINE MIR -8 260 73 7 1367 258 105 0 0 chr9 102533587 102533625 -21542547 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 7 1367 366 212 75 0 chr9 102534339 102534419 -21541753 - MLT1H LTR MaLR -2 547 462 7 1367 21 0 0 0 chr9 102535245 102535266 -21540906 + AT_rich Low_complexity Low_complexity 1 21 0 7 1367 221 295 13 0 chr9 102536165 102536243 -21539929 + ID4_ SINE ID 3 81 -2 7 1367 234 203 43 86 chr9 102537040 102537110 -21539062 + B4 SINE B4 50 116 -176 7 1367 720 219 122 11 chr9 102537303 102537483 -21538689 + B3 SINE B2 6 205 -11 7 1367 216 233 11 23 chr9 102537955 102537989 -21538183 + T-rich Low_complexity Low_complexity 55 88 0 7 1367 906 117 34 20 chr9 102537989 102538137 -21538035 - B1_Mur4 SINE Alu 0 150 1 7 1367 216 233 11 23 chr9 102538137 102538190 -21537982 + T-rich Low_complexity Low_complexity 3 54 0 8 1367 231 0 0 71 chr9 102540768 102540810 -21535362 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1367 832 19 0 0 chr9 102540810 102540914 -21535258 - B1_Mus2 SINE Alu -9 138 35 8 1367 292 229 14 14 chr9 102541378 102541449 -21534723 - ID4_ SINE ID -10 73 3 8 1367 1353 101 26 0 chr9 102542499 102542688 -21533484 - B2_Mm2 SINE B2 -1 194 1 8 1367 1473 78 5 0 chr9 102542826 102543018 -21533154 + B2_Mm1a SINE B2 1 193 0 8 1367 637 248 13 19 chr9 102543275 102543431 -21532741 + RSINE1 SINE B4 3 157 -8 8 1367 1523 57 0 30 chr9 102543515 102543714 -21532458 + B2_Mm1a SINE B2 1 193 0 8 1367 441 0 0 0 chr9 102544184 102544233 -21531939 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1367 289 145 28 28 chr9 102546458 102546529 -21529643 + CT-rich Low_complexity Low_complexity 3 73 0 8 1367 264 59 0 0 chr9 102547659 102547693 -21528479 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 9 1367 1083 124 0 11 chr9 102548096 102548460 -21527712 + (TG)n Simple_repeat Simple_repeat 1 359 0 9 1367 550 267 31 58 chr9 102548460 102548651 -21527521 - B4A SINE B4 0 292 107 9 1367 574 243 130 46 chr9 102548828 102549044 -21527128 - B4A SINE B4 -58 234 1 9 1367 537 236 135 7 chr9 102549086 102549227 -21526945 - RSINE1 SINE B4 -4 161 3 9 1367 1266 173 22 9 chr9 102549712 102549934 -21526238 - URR1B DNA MER1_type 0 225 1 9 1367 226 200 115 16 chr9 102550507 102550568 -21525604 - MLT1L LTR MaLR -110 500 434 9 1367 843 47 19 45 chr9 102550597 102550754 -21525418 + (GTTTG)n Simple_repeat Simple_repeat 2 154 0 9 1367 849 147 7 14 chr9 102550754 102550890 -21525282 - B1_Mus1 SINE Alu -8 140 5 9 1367 596 269 0 0 chr9 102551322 102551463 -21524709 - RSINE1 SINE B4 -23 142 2 9 1367 848 242 22 142 chr9 102551713 102552036 -21524136 + B4 SINE B4 9 292 0 1 1367 189 253 78 26 chr9 102552245 102552322 -21523850 - MIR SINE MIR -83 125 45 1 1367 490 243 35 35 chr9 102552757 102552902 -21523270 + Kanga2_a DNA Tc2 523 667 -221 1 1367 188 302 76 45 chr9 102553588 102553720 -21522452 + MIR3 SINE MIR 9 144 -64 1 1367 337 218 15 29 chr9 102554184 102554321 -21521851 + GA-rich Low_complexity Low_complexity 1 135 0 1 1367 215 139 28 0 chr9 102554361 102554397 -21521775 + GA-rich Low_complexity Low_complexity 4 40 0 1 1367 240 332 38 104 chr9 102554936 102555148 -21521024 + B4A SINE B4 17 214 -78 1 1367 207 171 0 0 chr9 102555374 102555409 -21520763 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1367 460 157 0 35 chr9 102555410 102555496 -21520676 - B1_Mm SINE Alu -1 146 64 1 1367 532 204 0 28 chr9 102555488 102555609 -21520563 - B1_Mur4 SINE Alu -18 131 14 1 1367 1032 173 71 0 chr9 102555733 102555930 -21520242 - B3 SINE B2 -5 211 1 1 1367 212 59 0 29 chr9 102557006 102557041 -21519131 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 1 1367 348 262 74 47 chr9 102557375 102557523 -21518649 + L3 LINE CR1 4288 4439 -50 1 1367 219 362 77 69 chr9 102558039 102558222 -21517950 + L2a LINE L2 2930 3093 -333 1 1367 501 17 0 0 chr9 102558222 102558280 -21517892 + (CCA)n Simple_repeat Simple_repeat 2 59 0 1 1367 219 362 77 69 chr9 102558280 102558589 -21517583 + L2a LINE L2 3094 3426 0 1 1367 578 123 212 34 chr9 102559638 102559756 -21516416 - B1_Mur1 SINE Alu 0 149 11 1 1367 671 285 46 15 chr9 102560532 102560728 -21515444 + B4 SINE B4 84 285 -7 1 1367 483 333 13 13 chr9 102561069 102561227 -21514945 + Zaphod DNA Tip100 450 607 -3424 1 1367 696 255 0 0 chr9 102561268 102561409 -21514763 + ID_B1 SINE B4 83 223 -1 1 1367 25 0 0 0 chr9 102562142 102562167 -21514005 + AT_rich Low_complexity Low_complexity 1 25 0 1 1367 1301 27 0 0 chr9 102562167 102562314 -21513858 - B1_Mm SINE Alu 0 147 1 1 1367 513 0 0 0 chr9 102562636 102562693 -21513479 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1367 681 241 23 0 chr9 102562702 102562835 -21513337 + RSINE1 SINE B4 6 141 -24 1 1367 315 0 0 0 chr9 102562835 102562870 -21513302 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1367 324 0 0 0 chr9 102563132 102563168 -21513004 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1367 393 81 0 0 chr9 102563190 102563252 -21512920 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1367 1156 175 14 28 chr9 102564123 102564335 -21511837 + B3 SINE B2 5 213 -3 1 1367 1342 100 17 0 chr9 102564383 102564563 -21511609 + B2_Mm2 SINE B2 2 184 -11 1 1367 234 254 90 0 chr9 102564613 102564680 -21511492 - MER5B DNA MER1_type -98 80 8 1 1367 387 168 21 13 chr9 102565078 102565195 -21510977 - B2_Mm2 SINE B2 0 195 46 1 1367 1303 97 23 0 chr9 102565207 102565383 -21510789 - B2_Mm2 SINE B2 -14 181 2 1 1367 895 210 53 10 chr9 102565442 102565649 -21510523 + B3 SINE B2 1 216 0 1 1367 1333 228 73 51 chr9 102566152 102566508 -21509664 + ORR1D2 LTR MaLR 2 365 -5 1 1367 261 159 0 0 chr9 102566643 102566687 -21509485 - ORR1D1 LTR MaLR 0 374 331 1 1367 885 146 0 0 chr9 102566687 102566824 -21509348 + B1_Mur4 SINE Alu 1 137 -13 1 1367 377 264 125 53 chr9 102566857 102567009 -21509163 + RSINE1 SINE B4 3 165 0 1 1367 257 226 49 30 chr9 102567021 102567185 -21508987 + L1ME1 LINE L1 5265 5431 -753 1 1367 690 206 0 0 chr9 102567239 102567599 -21508573 + (CA)n Simple_repeat Simple_repeat 1 360 0 1 1367 902 244 124 68 chr9 102567600 102567947 -21508225 + L1ME1 LINE L1 5450 5819 -360 1 1367 383 0 21 0 chr9 102567947 102567994 -21508178 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1367 902 244 124 68 chr9 102567994 102568113 -21508059 + L1ME1 LINE L1 5820 5942 -237 1 1367 244 312 13 0 chr9 102568125 102568202 -21507970 + BC1_Mm scRNA scRNA 16 93 -59 1 1367 416 214 119 0 chr9 102568344 102568428 -21507744 + PB1D10 SINE Alu 18 111 -6 1 1367 289 215 0 71 chr9 102568584 102568654 -21507518 + ID4_ SINE ID 8 72 -11 1 1367 181 83 27 27 chr9 102568687 102568724 -21507448 + (TCTCCC)n Simple_repeat Simple_repeat 6 42 0 1 1367 237 304 114 53 chr9 102569656 102569788 -21506384 + ID_B1 SINE B4 3 142 -82 1 1367 255 278 154 18 chr9 102569733 102569843 -21506329 + B1_Mur1 SINE Alu 5 129 -20 1 1367 1234 249 124 20 chr9 102571184 102571643 -21504529 - Lx8 LINE L1 -9 7464 6958 1 1367 180 125 0 0 chr9 102571658 102571690 -21504482 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 1 1367 1360 105 16 5 chr9 102571690 102571882 -21504290 - B2_Mm2 SINE B2 0 195 2 1 1367 306 222 44 11 chr9 102571894 102571985 -21504187 - L1MA5 LINE L1 -5 6295 6202 1 1367 512 256 57 180 chr9 102572258 102572558 -21503614 + B4 SINE B4 8 270 -22 1 1367 288 0 0 0 chr9 102572571 102572603 -21503569 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1367 414 0 0 0 chr9 102572603 102572648 -21503524 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1367 600 84 0 0 chr9 102573174 102573257 -21502915 + (CCA)n Simple_repeat Simple_repeat 1 83 0 1 1367 209 341 71 35 chr9 102573569 102573654 -21502518 - MIRm SINE MIR -121 155 68 1 1367 420 335 55 6 chr9 102574047 102574230 -21501942 - MIRb SINE MIR -43 225 34 1 1367 321 89 0 0 chr9 102574975 102575020 -21501152 + (CCCCCT)n Simple_repeat Simple_repeat 4 48 0 1 1367 744 207 29 0 chr9 102575300 102575440 -21500732 + B1_Mur1 SINE Alu 5 148 -1 1 1367 203 237 0 0 chr9 102575560 102575598 -21500574 + L2b LINE L2 3322 3359 -16 1 1367 402 302 60 0 chr9 102576136 102576252 -21499920 - PB1 SINE Alu -3 124 2 1 1367 930 255 16 0 chr9 102576261 102576453 -21499719 - ID_B1 SINE B4 -3 221 27 1 1367 26 0 0 0 chr9 102576530 102576556 -21499616 + AT_rich Low_complexity Low_complexity 1 26 0 1 1367 704 285 19 14 chr9 102577331 102577541 -21498631 - RMER15 LTR ERVL -66 509 299 1 1367 2107 138 84 8 chr9 102578307 102578666 -21497506 + ORR1B1 LTR MaLR 1 386 -8 1 1367 345 47 0 0 chr9 102579023 102579066 -21497106 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1 1367 405 0 0 0 chr9 102579113 102579158 -21497014 + (TTG)n Simple_repeat Simple_repeat 2 46 0 1 1367 583 245 14 54 chr9 102579188 102579335 -21496837 - RSINE1 SINE B4 -11 154 14 1 1367 587 293 40 54 chr9 102579556 102579852 -21496320 + ERVL-E-int LTR ERVL 4421 4712 -955 1 1367 570 214 6 11 chr9 102580302 102580470 -21495702 + (TG)n Simple_repeat Simple_repeat 1 167 0 1 1367 2540 95 0 3 chr9 102580470 102580798 -21495374 - ORR1A2 LTR MaLR 0 327 1 1 1367 570 214 6 11 chr9 102580798 102580809 -21495363 + (TG)n Simple_repeat Simple_repeat 2 12 0 1 1367 333 0 0 0 chr9 102580982 102581019 -21495153 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1367 492 319 42 64 chr9 102581210 102581615 -21494557 + L1M2 LINE L1 2230 2625 -4224 1 1367 851 137 16 0 chr9 102581710 102581834 -21494338 + B1_Mus1 SINE Alu 13 138 -10 1 1367 414 0 0 0 chr9 102581834 102581880 -21494292 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 1 1367 513 0 0 0 chr9 102581880 102581936 -21494236 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 1 1367 1050 32 0 0 chr9 102581937 102582063 -21494109 + (GAGAA)n Simple_repeat Simple_repeat 5 130 0 1 1367 835 298 89 70 chr9 102582083 102582783 -21493389 + L1M2 LINE L1 2825 3537 -3308 1 1367 538 285 136 19 chr9 102582881 102583124 -21493048 + L1M2 LINE L1 5956 6236 -763 1 1367 1418 58 0 40 chr9 102583124 102583323 -21492849 + B2_Mm2 SINE B2 1 191 -4 1 1367 538 285 136 19 chr9 102583323 102583387 -21492785 + L1M2 LINE L1 6237 6299 -700 1 1367 656 155 14 14 chr9 102583418 102583562 -21492610 + GA-rich Low_complexity Low_complexity 2 145 0 1 1367 271 245 0 0 chr9 102583563 102583612 -21492560 + G-rich Low_complexity Low_complexity 3 51 0 1 1367 209 167 125 36 chr9 102584139 102584195 -21491977 + L3 LINE CR1 2156 2216 -2273 1 1367 24 0 0 0 chr9 102584989 102585013 -21491159 + AT_rich Low_complexity Low_complexity 1 24 0 1 1367 623 296 7 7 chr9 102585013 102585166 -21491006 - RSINE1 SINE B4 -8 157 5 1 1367 204 97 0 0 chr9 102585293 102585324 -21490848 + (GGA)n Simple_repeat Simple_repeat 1 31 0 1 1367 607 99 10 10 chr9 102585347 102585449 -21490723 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 1 1367 787 181 44 25 chr9 102585846 102586005 -21490167 - BGLII LTR ERVK -39 382 221 1 1367 263 269 125 36 chr9 102586009 102586121 -21490051 - RSINE1 SINE B4 0 165 44 1 1367 510 61 0 0 chr9 102586133 102586199 -21489973 + (TCC)n Simple_repeat Simple_repeat 1 66 0 1 1367 186 43 0 0 chr9 102586203 102586226 -21489946 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1 1367 383 154 45 30 chr9 102586229 102586296 -21489876 - ID_B1 SINE B4 -14 210 143 1 1367 28 21 0 40 chr9 102586296 102586321 -21489851 + AT_rich Low_complexity Low_complexity 1 25 0 1 1367 1130 68 14 0 chr9 102586321 102586467 -21489705 - B1_Mus1 SINE Alu 0 148 1 1 1367 28 21 0 40 chr9 102586467 102586491 -21489681 + AT_rich Low_complexity Low_complexity 1 23 0 1 1367 1035 226 34 5 chr9 102586491 102586700 -21489472 - B3 SINE B2 -1 215 1 1 1367 272 242 0 16 chr9 102586703 102586766 -21489406 - ID_B1 SINE B4 -70 154 93 1 1367 3018 71 24 7 chr9 102586766 102587179 -21488993 - BGLII LTR ERVK 0 421 2 1 1367 1003 211 33 14 chr9 102587374 102587586 -21488586 + B3 SINE B2 1 216 0 1 1367 716 172 59 7 chr9 102587612 102587747 -21488425 + B3A SINE B2 2 143 -55 1 1367 240 130 0 0 chr9 102587752 102587798 -21488374 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1367 906 169 7 0 chr9 102587867 102588015 -21488157 + B1_Mur4 SINE Alu 2 150 0 1 1367 235 43 65 0 chr9 102588050 102588096 -21488076 + L1Md_F2 LINE L1 6530 6578 -4 1 1367 858 275 75 39 chr9 102588194 102588474 -21487698 - B4A SINE B4 0 292 3 1 1367 729 250 31 20 chr9 102588552 102588748 -21487424 - B3A SINE B2 0 198 1 1 1367 303 332 82 39 chr9 102588831 102589038 -21487134 - L1M5 LINE L1 -1259 4887 4672 2 1367 743 183 29 51 chr9 102589038 102589176 -21486996 - B1_Mur2 SINE Alu -13 136 2 2 1367 233 253 31 21 chr9 102589089 102589186 -21486986 - ORR1B1-int LTR MaLR -776 733 636 2 1367 231 286 50 8 chr9 102589346 102589466 -21486706 - L1M5 LINE L1 -1663 4483 4359 2 1367 232 177 24 48 chr9 102589541 102589574 -21486598 + T-rich Low_complexity Low_complexity 55 85 0 2 1367 991 130 7 20 chr9 102589574 102589723 -21486449 - B1_Mus2 SINE Alu 0 147 1 2 1367 232 177 24 48 chr9 102589723 102589772 -21486400 + T-rich Low_complexity Low_complexity 5 54 0 2 1367 1099 103 7 0 chr9 102589772 102589918 -21486254 - B1_Mus2 SINE Alu 0 147 1 2 1367 234 0 0 0 chr9 102590717 102590743 -21485429 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 2 1367 1428 154 209 76 chr9 102590744 102591088 -21485084 + MTD LTR MaLR 22 411 -8 2 1367 457 259 30 106 chr9 102591434 102591895 -21484277 - RMER17C LTR ERVK -32 378 1 2 1367 321 26 0 0 chr9 102593332 102593370 -21482802 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1367 310 289 73 53 chr9 102594037 102594187 -21481985 - L1MDa LINE L1 -4075 2558 2406 2 1367 210 102 82 0 chr9 102594444 102594493 -21481679 + A-rich Low_complexity Low_complexity 3 55 0 2 1367 231 246 22 168 chr9 102594848 102594985 -21481187 - PB1D10 SINE Alu 0 117 1 2 1367 722 264 45 0 chr9 102595758 102595936 -21480236 - ID_B1 SINE B4 -34 190 5 2 1367 346 258 52 0 chr9 102595940 102596037 -21480135 + ORR1E LTR MaLR 9 110 -249 2 1367 342 147 28 42 chr9 102596072 102596121 -21480051 + B2_Mm2 SINE B2 105 155 -40 2 1367 200 34 0 33 chr9 102596121 102596151 -21480021 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2 1367 342 147 28 42 chr9 102596151 102596172 -21480000 + B2_Mm2 SINE B2 156 174 -21 2 1367 370 333 150 5 chr9 102596172 102596359 -21479813 - MIR SINE MIR -18 244 31 2 1367 2140 208 24 44 chr9 102596582 102597076 -21479096 + RMER19C LTR ERVK 115 610 -1 2 1367 3462 26 13 0 chr9 102597681 102598072 -21478100 - MTA_Mm LTR MaLR 0 396 1 2 1367 1438 81 5 0 chr9 102598269 102598455 -21477717 + B2_Mm1a SINE B2 1 187 -6 2 1367 1563 234 12 35 chr9 102598477 102598823 -21477349 - ORR1D2 LTR MaLR -29 341 4 2 1367 784 294 40 74 chr9 102598827 102599097 -21477075 + RMER5 LTR ERV1 145 400 -134 2 1367 2499 89 9 3 chr9 102599097 102599424 -21476748 + ORR1A4 LTR MaLR 1 329 0 2 1367 784 294 40 74 chr9 102599424 102599557 -21476615 + RMER5 LTR ERV1 401 534 0 2 1367 197 256 118 75 chr9 102599866 102599959 -21476213 + L2a LINE L2 3330 3426 0 2 1367 183 280 20 0 chr9 102599968 102600018 -21476154 + L2 LINE L2 2786 2836 -583 2 1367 456 321 8 22 chr9 102600038 102600172 -21476000 + B3A SINE B2 2 133 -65 2 1367 240 289 44 78 chr9 102600057 102600353 -21475819 + RMER17A LTR ERVK 168 453 -298 2 1367 478 232 67 67 chr9 102600316 102600450 -21475722 + B1_Mur1 SINE Alu 16 149 0 2 1367 216 0 0 0 chr9 102600461 102600485 -21475687 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 2 1367 297 75 0 0 chr9 102600486 102600526 -21475646 + (TCC)n Simple_repeat Simple_repeat 3 42 0 2 1367 190 333 51 0 chr9 102601108 102601186 -21474986 - MIRb SINE MIR -15 253 172 2 1367 305 316 124 39 chr9 102601217 102601474 -21474698 + MLT1J LTR MaLR 29 307 -205 2 1367 228 181 12 24 chr9 102601709 102601794 -21474378 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 1367 378 0 0 0 chr9 102601817 102601859 -21474313 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1367 394 260 54 72 chr9 102601989 102602155 -21474017 - LTR90B LTR LTR -6 790 628 2 1367 837 163 0 0 chr9 102603847 102604025 -21472147 + (CTCA)n Simple_repeat Simple_repeat 2 179 0 2 1367 263 252 0 7 chr9 102603992 102604136 -21472036 + (CA)n Simple_repeat Simple_repeat 1 143 0 2 1367 273 250 0 0 chr9 102604147 102604211 -21471961 + (CTCA)n Simple_repeat Simple_repeat 2 65 0 2 1367 441 239 0 0 chr9 102604212 102604392 -21471780 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1367 333 251 15 24 chr9 102604372 102604843 -21471329 + (CTCA)n Simple_repeat Simple_repeat 1 466 0 2 1367 352 364 30 0 chr9 102604865 102604997 -21471175 + MLT1F2 LTR MaLR 3 138 -422 2 1367 346 276 20 20 chr9 102605315 102605415 -21470757 - L2a LINE L2 -1 3425 3326 2 1367 2440 69 3 3 chr9 102605543 102605862 -21470310 - ORR1A2 LTR MaLR -8 319 1 2 1367 792 138 87 0 chr9 102606167 102606305 -21469867 + B1_Mur4 SINE Alu 1 150 0 2 1367 820 278 31 49 chr9 102606346 102606633 -21469539 - B4A SINE B4 -2 290 9 2 1367 556 228 134 52 chr9 102606662 102606856 -21469316 + B4A SINE B4 1 210 -82 2 1367 247 377 28 48 chr9 102606885 102607030 -21469142 - RMER12 LTR ERVK -468 854 713 2 1367 285 27 0 0 chr9 102607019 102607056 -21469116 - B1_Mm SINE Alu 0 147 111 2 1367 927 43 10 1 chr9 102607045 102607170 -21469002 + B1_Mm SINE Alu 23 147 0 2 1367 342 47 30 30 chr9 102607170 102607236 -21468936 + (CAAAAA)n Simple_repeat Simple_repeat 6 71 0 2 1367 858 218 86 5 chr9 102607702 102607900 -21468272 + ID_B1 SINE B4 3 216 -8 2 1367 22 0 0 0 chr9 102608016 102608038 -21468134 + AT_rich Low_complexity Low_complexity 1 22 0 2 1367 731 288 0 6 chr9 102608046 102608207 -21467965 - RSINE1 SINE B4 0 165 6 2 1367 332 307 48 10 chr9 102608307 102608445 -21467727 + MIRc SINE MIR 14 158 -110 2 1367 201 178 0 135 chr9 102608743 102608795 -21467377 - MIRc SINE MIR -147 121 77 2 1367 556 291 32 38 chr9 102608829 102608986 -21467186 + RSINE1 SINE B4 10 165 0 2 1367 227 329 58 112 chr9 102608966 102609154 -21467018 - RMER12 LTR ERVK -466 856 679 2 1367 768 159 19 76 chr9 102609088 102609165 -21467007 - B1_Mur3 SINE Alu -1 148 77 2 1367 3016 61 45 8 chr9 102609165 102609547 -21466625 + MTA_Mm LTR MaLR 1 396 0 2 1367 768 159 19 76 chr9 102609547 102609626 -21466546 - B1_Mur3 SINE Alu -73 76 1 2 1367 249 262 167 0 chr9 102609741 102609825 -21466347 + B4A SINE B4 59 156 -136 2 1367 608 221 48 60 chr9 102609811 102609979 -21466193 + B3 SINE B2 51 216 0 2 1367 1383 61 16 22 chr9 102609985 102610168 -21466004 + B2_Mm2 SINE B2 2 183 -12 2 1367 275 222 93 0 chr9 102610202 102610256 -21465916 + PB1D9 SINE Alu 14 72 -48 2 1367 208 0 0 119 chr9 102610275 102610317 -21465855 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 2 1367 3273 69 0 12 chr9 102610662 102611074 -21465098 - MTB_Mm LTR MaLR 0 407 1 2 1367 739 160 114 0 chr9 102611232 102611363 -21464809 - B1_Mus1 SINE Alu -1 147 2 2 1367 411 107 0 0 chr9 102612783 102612858 -21463314 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1367 284 305 162 7 chr9 102612858 102613000 -21463172 - B4A SINE B4 -127 165 2 2 1367 243 314 147 25 chr9 102613002 102613397 -21462775 + HAL1 LINE L1 812 1254 -1253 2 1367 565 216 18 9 chr9 102613449 102613561 -21462611 + B1F2 SINE Alu 23 135 -14 2 1367 274 98 0 38 chr9 102613568 102613621 -21462551 + (GGA)n Simple_repeat Simple_repeat 2 52 0 2 1367 355 380 90 23 chr9 102613621 102613931 -21462241 + HAL1 LINE L1 1227 1557 -950 2 1367 541 201 89 58 chr9 102613957 102614147 -21462025 + B3A SINE B2 1 196 -2 2 1367 499 137 205 0 chr9 102614176 102614293 -21461879 + ORR1C1 LTR MaLR 1 141 -237 2 1367 782 132 7 53 chr9 102614300 102614452 -21461720 - B1_Mur4 SINE Alu 0 150 6 2 1367 1275 182 22 0 chr9 102614469 102614700 -21461472 + ORR1C1 LTR MaLR 129 364 -14 2 1367 606 296 20 45 chr9 102614642 102614840 -21461332 - B3 SINE B2 -21 195 3 2 1367 338 136 281 11 chr9 102614840 102614921 -21461251 - ORR1C1 LTR MaLR -261 117 13 2 1367 1159 55 7 0 chr9 102614958 102615104 -21461068 - B1_Mus1 SINE Alu 0 148 2 2 1367 195 42 0 0 chr9 102615148 102615172 -21461000 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1367 387 0 0 0 chr9 102615179 102615222 -21460950 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1367 877 92 0 44 chr9 102615274 102615410 -21460762 + B2_Mm2 SINE B2 1 130 -65 2 1367 336 345 25 8 chr9 102615477 102615597 -21460575 + HAL1 LINE L1 1719 1840 -667 2 1367 645 221 13 24 chr9 102615640 102615816 -21460356 - ORR1D1 LTR MaLR -204 163 3 2 1367 692 189 35 14 chr9 102616075 102616220 -21459952 + B1_Mur1 SINE Alu 2 149 0 2 1367 351 0 0 0 chr9 102617131 102617170 -21459002 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1367 862 273 5 0 chr9 102618550 102618759 -21457413 - B3 SINE B2 0 216 7 2 1367 340 302 35 8 chr9 102619193 102619323 -21456849 + MIRb SINE MIR 46 181 -87 2 1367 225 209 58 29 chr9 102621774 102621843 -21454329 + RMER6B LTR ERVK 382 452 -9 2 1367 333 0 0 0 chr9 102622133 102622170 -21454002 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1367 258 136 0 0 chr9 102622172 102622216 -21453956 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1367 274 176 264 0 chr9 102623405 102623496 -21452676 + PB1D10 SINE Alu 3 117 0 2 1367 252 0 0 0 chr9 102623854 102623882 -21452290 + (TGAG)n Simple_repeat Simple_repeat 1 28 0 2 1367 324 0 0 0 chr9 102623995 102624031 -21452141 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1367 360 59 0 0 chr9 102626289 102626340 -21449832 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1368 275 322 100 17 chr9 102629696 102629816 -21446356 - MER3 DNA MER1_type -65 144 15 2 1368 1184 27 0 14 chr9 102632825 102632973 -21443199 + B1_Mm SINE Alu 2 147 0 2 1368 260 274 36 45 chr9 102635770 102635881 -21440291 - PB1D7 SINE Alu -10 110 1 2 1368 441 0 0 0 chr9 102638703 102638752 -21437420 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1368 541 302 72 51 chr9 102638771 102639008 -21437164 - B4A SINE B4 -16 276 35 2 1368 231 88 0 0 chr9 102639121 102639155 -21437017 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2 1368 519 315 21 14 chr9 102640262 102640407 -21435765 - ID_B1 SINE B4 -35 189 44 2 1368 421 293 74 14 chr9 102640415 102640611 -21435561 - B3 SINE B2 -6 189 2 3 1368 24 53 0 0 chr9 102641333 102641371 -21434801 + AT_rich Low_complexity Low_complexity 1 38 0 3 1368 581 223 32 32 chr9 102641610 102641735 -21434437 + ID_B1 SINE B4 81 205 -19 3 1368 201 39 0 0 chr9 102642283 102642309 -21433863 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 3 1368 537 289 61 6 chr9 102642522 102642703 -21433469 - B3A SINE B2 -6 192 2 3 1368 342 267 10 10 chr9 102642748 102642850 -21433322 + L1M5 LINE L1 5695 5796 -328 3 1368 438 20 0 0 chr9 102642913 102642964 -21433208 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1368 274 353 20 65 chr9 102643074 102643274 -21432898 + L2c LINE L2 3043 3233 -154 3 1368 577 281 79 36 chr9 102643461 102643636 -21432536 + B4A SINE B4 3 189 -103 3 1368 856 160 206 11 chr9 102643636 102643825 -21432347 - URR1A DNA MER1_type 0 226 1 3 1368 577 281 79 36 chr9 102643825 102643926 -21432246 + B4A SINE B4 190 291 -1 3 1368 626 246 0 0 chr9 102643975 102644117 -21432055 - B1F2 SINE Alu -6 143 2 3 1368 602 258 48 13 chr9 102644117 102644168 -21432004 + L1MC4a LINE L1 7269 7317 -565 3 1368 5588 96 104 5 chr9 102644168 102645039 -21431133 - RMER17B LTR ERVK 0 958 1 3 1368 602 258 48 13 chr9 102645039 102645215 -21430957 + L1MC4a LINE L1 7318 7503 -379 3 1368 318 239 43 64 chr9 102645220 102645314 -21430858 - PB1D10 SINE Alu -2 115 24 3 1368 541 233 16 24 chr9 102645361 102645484 -21430688 - RSINE1 SINE B4 -40 125 4 3 1368 397 270 12 0 chr9 102645520 102645619 -21430553 + PB1D9 SINE Alu 1 107 -20 3 1368 713 169 215 0 chr9 102645627 102645799 -21430373 + B3 SINE B2 7 215 -1 3 1368 463 219 21 0 chr9 102646180 102646276 -21429896 + ID_B1 SINE B4 127 224 0 3 1368 504 269 62 0 chr9 102646319 102646449 -21429723 + B1F2 SINE Alu 3 140 -9 3 1368 922 158 0 0 chr9 102646541 102646687 -21429485 + B1_Mur4 SINE Alu 5 150 0 3 1368 209 30 0 57 chr9 102646772 102646785 -21429387 + (CAAAA)n Simple_repeat Simple_repeat 2 14 0 3 1368 1634 26 0 0 chr9 102646785 102646977 -21429195 + B2_Mm1a SINE B2 2 193 0 3 1368 209 30 0 57 chr9 102646977 102646998 -21429174 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 3 1368 294 319 83 57 chr9 102647259 102647387 -21428785 - MLT1C LTR MaLR -42 425 295 3 1368 1108 158 36 23 chr9 102647387 102647607 -21428565 - URR1B DNA MER1_type -2 223 1 3 1368 294 319 83 57 chr9 102647607 102647671 -21428501 - MLT1C LTR MaLR -173 294 228 3 1368 725 272 56 10 chr9 102647761 102647958 -21428214 - ID_B1 SINE B4 -2 222 17 3 1368 999 52 88 0 chr9 102648046 102648182 -21427990 - B1_Mus1 SINE Alu 0 148 1 3 1368 228 67 0 0 chr9 102648250 102648280 -21427892 + (CTAAT)n Simple_repeat Simple_repeat 4 33 0 3 1368 293 299 93 14 chr9 102648298 102648437 -21427735 - MLT1H LTR MaLR -2 547 398 3 1368 564 77 0 0 chr9 102648461 102648539 -21427633 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1368 238 252 118 27 chr9 102649312 102649422 -21426750 + MIRm SINE MIR 118 237 -39 3 1368 32 36 0 18 chr9 102649608 102649635 -21426537 + AT_rich Low_complexity Low_complexity 1 27 0 3 1368 1164 54 0 13 chr9 102649635 102649784 -21426388 + B1_Mus1 SINE Alu 2 148 0 3 1368 32 36 0 18 chr9 102649784 102649813 -21426359 + AT_rich Low_complexity Low_complexity 1 29 0 3 1368 220 240 95 103 chr9 102650038 102650154 -21426018 - BC1_Mm scRNA scRNA -37 115 1 3 1368 370 107 336 17 chr9 102650776 102650889 -21425283 - B2_Mm2 SINE B2 0 195 47 3 1368 1236 75 0 6 chr9 102650944 102651118 -21425054 - B2_Mm2 SINE B2 -22 173 1 3 1368 631 281 12 12 chr9 102651147 102651320 -21424852 - ID_B1 SINE B4 -13 211 39 3 1368 414 108 0 0 chr9 102651877 102651951 -21424221 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1368 654 201 14 35 chr9 102651992 102652136 -21424036 - B3 SINE B2 0 216 76 3 1368 206 288 112 43 chr9 102652607 102652723 -21423449 + L2b LINE L2 3252 3375 0 3 1368 3408 29 2 7 chr9 102653004 102653425 -21422747 + L1Md_F2 LINE L1 6164 6582 0 3 1368 695 210 7 34 chr9 102653533 102653681 -21422491 + B1_Mur1 SINE Alu 1 144 -5 3 1368 349 147 0 39 chr9 102653697 102653775 -21422397 + GA-rich Low_complexity Low_complexity 2 76 0 3 1368 210 309 30 30 chr9 102653794 102653894 -21422278 + PB1D7 SINE Alu 21 120 0 3 1368 207 0 0 0 chr9 102653895 102653918 -21422254 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 1368 612 27 0 0 chr9 102654002 102654076 -21422096 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1368 28 29 0 0 chr9 102655551 102655586 -21420586 + AT_rich Low_complexity Low_complexity 1 35 0 3 1368 742 196 34 82 chr9 102655586 102655792 -21420380 - B3A SINE B2 -2 196 1 3 1368 891 261 0 10 chr9 102655798 102656003 -21420169 - B3 SINE B2 -8 208 6 3 1368 261 0 0 0 chr9 102656510 102656539 -21419633 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1368 919 239 15 0 chr9 102656548 102656753 -21419419 - B3 SINE B2 -8 208 1 3 1368 231 292 0 15 chr9 102657023 102657089 -21419083 + MER103 DNA DNA 3 67 -99 3 1368 746 275 16 0 chr9 102657705 102657894 -21418278 + ID_B1 SINE B4 1 192 -32 3 1368 378 0 0 0 chr9 102657898 102657940 -21418232 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1368 201 325 194 16 chr9 102659116 102659307 -21416865 - L2a LINE L2 -4 3422 3198 3 1368 714 292 103 23 chr9 102659600 102659863 -21416309 + B4A SINE B4 9 292 0 3 1368 284 214 34 0 chr9 102659864 102659981 -21416191 + (CA)n Simple_repeat Simple_repeat 2 122 0 3 1368 503 251 17 22 chr9 102660025 102660204 -21415968 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1368 356 119 45 18 chr9 102660277 102660388 -21415784 + (CA)n Simple_repeat Simple_repeat 1 114 0 3 1368 257 135 19 0 chr9 102660446 102660498 -21415674 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1368 930 236 0 31 chr9 102660784 102661007 -21415165 - B3 SINE B2 0 216 1 3 1368 505 186 8 113 chr9 102661227 102661360 -21414812 - B1_Mur3 SINE Alu -1 148 30 3 1368 305 170 0 0 chr9 102661343 102661396 -21414776 - ID SINE ID -171 53 1 3 1368 288 302 105 19 chr9 102662368 102662530 -21413642 + MIRb SINE MIR 45 220 -48 3 1368 627 213 8 0 chr9 102662706 102662833 -21413339 + B1_Mur1 SINE Alu 1 128 -21 3 1368 492 168 0 0 chr9 102663085 102663210 -21412962 + CT-rich Low_complexity Low_complexity 2 126 0 3 1368 725 116 0 4 chr9 102663506 102663626 -21412546 - B1_Mus1 SINE Alu -29 118 3 3 1368 474 304 115 5 chr9 102664667 102664859 -21411313 - ID_B1 SINE B4 -10 214 2 3 1368 480 240 75 30 chr9 102664877 102665010 -21411162 - B1F1 SINE Alu -1 148 10 3 1368 355 311 73 101 chr9 102664887 102665105 -21411067 - ID_B1 SINE B4 -8 216 5 3 1368 375 298 14 28 chr9 102665245 102665390 -21410782 + B1F SINE Alu 5 147 -2 3 1368 304 210 148 0 chr9 102666442 102666523 -21409649 - ID_B1 SINE B4 -21 203 111 3 1368 333 283 63 81 chr9 102666667 102666773 -21409399 - Lx8 LINE L1 0 7473 7371 3 1368 1160 106 0 6 chr9 102666773 102666953 -21409219 + (TCC)n Simple_repeat Simple_repeat 2 180 0 3 1368 353 274 67 85 chr9 102666953 102667069 -21409103 - Lx8 LINE L1 -103 7370 7255 3 1368 3542 18 5 0 chr9 102667153 102667547 -21408625 - MTA_Mm LTR MaLR 0 396 1 3 1368 9812 16 0 0 chr9 102667547 102668645 -21407527 - MTA_Mm-int LTR MaLR 0 1098 1 3 1368 3542 18 5 0 chr9 102668645 102669039 -21407133 - MTA_Mm LTR MaLR 0 396 1 3 1368 225 340 140 6 chr9 102669652 102669809 -21406363 + MER5B DNA MER1_type 1 178 0 3 1368 1163 68 0 26 chr9 102670236 102670387 -21405785 + B1_Mus1 SINE Alu 1 147 -1 3 1368 781 288 33 47 chr9 102671993 102672208 -21403964 - B4 SINE B4 0 292 81 3 1368 288 0 0 119 chr9 102672212 102672271 -21403901 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 3 1368 371 283 34 31 chr9 102672548 102672752 -21403420 + L1MC LINE L1 5377 5591 -533 3 1368 286 286 163 63 chr9 102672786 102673025 -21403147 + MIRc SINE MIR 2 268 0 3 1368 269 214 0 0 chr9 102673028 102673084 -21403088 + L1MC LINE L1 5619 5674 -566 3 1368 247 135 58 0 chr9 102673320 102673372 -21402800 + PB1D10 SINE Alu 58 112 -5 3 1368 264 157 0 0 chr9 102673326 102673377 -21402795 + ID_B1 SINE B4 174 224 0 3 1368 256 329 0 0 chr9 102673382 102673455 -21402717 + ID4_ SINE ID 2 74 -9 3 1368 38 0 0 0 chr9 102674322 102674360 -21401812 + AT_rich Low_complexity Low_complexity 1 38 0 3 1368 1098 168 54 5 chr9 102674366 102674569 -21401603 - B3 SINE B2 0 216 4 3 1368 432 245 78 10 chr9 102674574 102674677 -21401495 - PB1 SINE Alu 0 127 18 3 1368 369 145 0 0 chr9 102674862 102674924 -21401248 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1368 375 165 275 0 chr9 102675399 102675508 -21400664 + B1_Mus1 SINE Alu 1 139 -9 3 1368 603 255 59 43 chr9 102675523 102675716 -21400456 + B3A SINE B2 27 216 0 3 1368 1172 201 9 5 chr9 102675712 102675922 -21400250 + B3 SINE B2 6 216 0 3 1368 816 65 9 0 chr9 102676042 102676149 -21400023 - B1_Mm SINE Alu 0 147 40 3 1368 283 309 0 0 chr9 102676152 102676262 -21399910 + (CCTG)n Simple_repeat Simple_repeat 2 111 0 3 1368 315 136 68 36 chr9 102676269 102676347 -21399825 - B1_Mur3 SINE Alu -71 76 1 3 1368 273 210 0 46 chr9 102676285 102676350 -21399822 - B4 SINE B4 -148 144 83 3 1368 624 257 88 33 chr9 102676543 102676724 -21399448 - B3A SINE B2 -6 192 2 3 1368 621 209 88 0 chr9 102676918 102677066 -21399106 - RSINE1 SINE B4 -4 161 1 3 1368 357 24 0 0 chr9 102677228 102677270 -21398902 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3 1368 198 0 0 0 chr9 102677419 102677441 -21398731 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1368 234 0 0 0 chr9 102677674 102677700 -21398472 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 1368 1311 165 9 9 chr9 102677728 102677954 -21398218 + URR1A DNA MER1_type 1 226 0 3 1368 821 142 0 30 chr9 102678734 102678865 -21397307 + B1_Mus1 SINE Alu 8 134 -14 4 1368 231 36 0 0 chr9 102678880 102678908 -21397264 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1368 944 174 3 14 chr9 102678926 102679243 -21396929 + GA-rich Low_complexity Low_complexity 1 313 0 4 1368 207 337 11 11 chr9 102679479 102679572 -21396600 + L2a LINE L2 3333 3425 -1 4 1368 346 114 25 0 chr9 102681266 102681345 -21394827 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 4 1368 310 262 25 0 chr9 102681438 102681518 -21394654 + L2b LINE L2 3293 3374 -1 4 1368 787 158 0 8 chr9 102682793 102682914 -21393258 + B1_Mur3 SINE Alu 10 129 -20 4 1368 798 67 0 0 chr9 102682920 102683025 -21393147 + (GAAA)n Simple_repeat Simple_repeat 1 105 0 4 1368 445 153 42 0 chr9 102683099 102683171 -21393001 - PB1D9 SINE Alu -27 93 19 4 1368 1003 169 125 0 chr9 102684491 102684675 -21391497 - B3 SINE B2 -9 207 1 4 1368 644 253 25 19 chr9 102684759 102684920 -21391252 - RSINE1 SINE B4 0 165 4 4 1368 416 279 131 0 chr9 102684950 102685072 -21391100 - ID_B1 SINE B4 -70 154 17 4 1368 334 296 20 30 chr9 102685159 102685260 -21390912 - MER5A DNA MER1_type -66 123 24 4 1368 342 0 0 0 chr9 102686563 102686601 -21389571 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1368 368 272 0 0 chr9 102687324 102687405 -21388767 - ID4_ SINE ID -2 81 1 4 1368 1279 132 11 0 chr9 102687907 102688097 -21388075 - B2_Mm1t SINE B2 0 193 2 4 1368 793 173 40 11 chr9 102688231 102688390 -21387782 + B1_Mur4 SINE Alu 2 305 -6 4 1368 1191 135 10 30 chr9 102688495 102688693 -21387479 - B2_Mm2 SINE B2 -1 194 1 4 1368 3940 138 70 28 chr9 102689013 102689738 -21386434 - RMER6A LTR ERVK 0 756 1 4 1368 684 242 52 47 chr9 102689776 102689988 -21386184 - B3 SINE B2 0 216 4 4 1368 208 186 70 14 chr9 102690275 102690310 -21385862 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 1368 1178 62 7 0 chr9 102690310 102690456 -21385716 - B1_Mus1 SINE Alu -1 147 1 4 1368 208 186 70 14 chr9 102690456 102690491 -21385681 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1368 689 241 35 0 chr9 102690505 102690650 -21385522 - RSINE1 SINE B4 -14 151 2 4 1368 352 372 79 29 chr9 102690719 102690996 -21385176 + HAL1 LINE L1 1403 1693 -814 4 1368 850 187 70 16 chr9 102691007 102691192 -21384980 + B3 SINE B2 1 195 -21 4 1368 1740 148 43 0 chr9 102691431 102691709 -21384463 - ORR1B1 LTR MaLR 0 394 105 4 1368 640 91 44 35 chr9 102692010 102692124 -21384048 - ORR1B1 LTR MaLR -279 115 1 4 1368 392 323 142 63 chr9 102692203 102692339 -21383833 - B4A SINE B4 -2 290 2 4 1368 479 242 8 61 chr9 102692339 102692471 -21383701 - B3 SINE B2 -90 126 2 4 1368 596 219 14 55 chr9 102692492 102692637 -21383535 + B4A SINE B4 154 292 0 4 1368 389 292 75 0 chr9 102692697 102692817 -21383355 + ID_B1 SINE B4 94 222 -2 4 1368 819 224 35 15 chr9 102692857 102693056 -21383116 + MER45B DNA Tip100 713 915 -125 4 1368 714 114 211 0 chr9 102693847 102693961 -21382211 + B1_Mus1 SINE Alu 5 142 -6 4 1368 216 0 0 0 chr9 102694784 102694808 -21381364 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 4 1368 331 283 20 111 chr9 102694815 102695014 -21381158 - MER53 DNA hAT -2 191 11 4 1368 243 0 0 0 chr9 102695033 102695060 -21381112 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1368 1309 14 0 0 chr9 102695060 102695207 -21380965 - B1_Mm SINE Alu 0 147 1 4 1368 535 234 19 0 chr9 102695217 102695324 -21380848 - B1F2 SINE Alu -7 142 34 4 1368 294 73 0 0 chr9 102695499 102695540 -21380632 + (TCCC)n Simple_repeat Simple_repeat 3 43 0 4 1368 312 298 148 10 chr9 102695597 102695843 -21380329 + L2a LINE L2 3093 3424 -2 4 1368 673 278 119 56 chr9 102696129 102696320 -21379852 + B4 SINE B4 12 218 -74 4 1368 306 0 0 0 chr9 102696320 102696354 -21379818 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1368 324 0 0 0 chr9 102696354 102696389 -21379783 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1368 673 278 119 56 chr9 102696389 102696447 -21379725 + B4 SINE B4 219 277 -15 4 1368 689 63 0 10 chr9 102697083 102697179 -21378993 + (TTTC)n Simple_repeat Simple_repeat 3 97 0 4 1368 618 224 0 8 chr9 102697342 102697459 -21378713 + B1_Mur3 SINE Alu 14 129 -20 4 1368 1122 252 32 39 chr9 102697474 102697497 -21378675 - MTE2a LTR MaLR -43 336 314 4 1368 219 36 0 0 chr9 102697497 102697525 -21378647 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1368 1122 254 33 40 chr9 102697525 102697798 -21378374 - MTE2a LTR MaLR -67 352 59 4 1368 743 131 128 23 chr9 102697798 102697931 -21378241 - B1_Mur2 SINE Alu -1 148 2 4 1368 935 295 50 61 chr9 102697931 102698012 -21378160 - MTE2a LTR MaLR -337 82 2 4 1368 187 281 0 66 chr9 102698258 102698319 -21377853 + MIRc SINE MIR 29 85 -183 4 1368 321 268 72 0 chr9 102698585 102698682 -21377490 + HAL1-2a_MD LINE L1 2328 2431 -593 4 1368 4745 157 41 43 chr9 102699664 102700361 -21375811 + RLTR25A LTR ERVK 1 700 -403 4 1368 1276 79 39 6 chr9 102700361 102700540 -21375632 + B2_Mm2 SINE B2 2 186 -9 4 1368 4745 179 67 56 chr9 102700540 102700837 -21375335 + RLTR25A LTR ERVK 701 1027 -1 4 1368 226 340 21 0 chr9 102700857 102700954 -21375218 - LTR88a LTR Gypsy -448 368 270 4 1368 448 244 36 80 chr9 102701433 102701571 -21374601 + MTEa LTR MaLR 10 141 -238 4 1368 552 327 68 16 chr9 102701666 102701918 -21374254 + MT2A LTR ERVL 269 533 0 4 1368 31 0 0 0 chr9 102701946 102701977 -21374195 + AT_rich Low_complexity Low_complexity 1 31 0 4 1368 966 244 5 54 chr9 102701978 102702157 -21374015 - B3 SINE B2 -6 210 36 4 1368 1686 36 0 0 chr9 102702157 102702350 -21373822 + B2_Mm1a SINE B2 1 193 0 4 1368 966 244 5 54 chr9 102702350 102702391 -21373781 - B3 SINE B2 -181 35 1 4 1368 696 205 13 20 chr9 102702412 102702561 -21373611 - B1_Mur1 SINE Alu 0 149 2 4 1368 563 274 206 44 chr9 102702676 102702997 -21373175 - MTEb LTR MaLR -6 373 1 4 1368 971 149 152 15 chr9 102703114 102703312 -21372860 + URR1B DNA MER1_type 1 225 0 4 1368 1277 84 8 6 chr9 102703656 102704019 -21372153 + (TTTC)n Simple_repeat Simple_repeat 1 364 0 4 1368 297 0 0 0 chr9 102704026 102704059 -21372113 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1368 1213 89 65 6 chr9 102704059 102704229 -21371943 - B2_Mm2 SINE B2 -15 180 1 4 1368 224 197 0 32 chr9 102704345 102704408 -21371764 + T-rich Low_complexity Low_complexity 6 66 0 4 1368 206 172 62 0 chr9 102704563 102704627 -21371545 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1368 267 31 0 0 chr9 102704669 102704701 -21371471 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1368 505 214 214 0 chr9 102704701 102704813 -21371359 - B1_Mur1 SINE Alu -12 137 2 4 1368 22 0 0 0 chr9 102704816 102704838 -21371334 + AT_rich Low_complexity Low_complexity 1 22 0 4 1368 983 204 23 42 chr9 102704841 102705056 -21371116 - B3 SINE B2 -5 211 1 4 1368 2435 176 98 37 chr9 102705086 102705599 -21370573 - Lx5 LINE L1 -564 6486 5943 4 1368 2077 177 0 0 chr9 102705598 102705931 -21370241 + Lx5 LINE L1 6491 6823 -227 4 1368 1468 248 82 71 chr9 102705941 102706025 -21370147 - RLTR20D LTR ERVK -10 558 466 4 1368 396 0 0 0 chr9 102706025 102706069 -21370103 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1368 1468 248 82 71 chr9 102706069 102706111 -21370061 - RLTR20D LTR ERVK -103 465 434 4 1368 1193 54 0 0 chr9 102706111 102706259 -21369913 - B1_Mus1 SINE Alu 0 148 1 4 1368 1468 248 82 71 chr9 102706259 102706683 -21369489 - RLTR20D LTR ERVK -135 433 2 4 1368 973 202 68 9 chr9 102706683 102706903 -21369269 + Lx5 LINE L1 6818 7050 0 4 1368 316 318 19 56 chr9 102707988 102708148 -21368024 - MLT1J1 LTR MaLR -230 214 61 4 1368 335 339 60 30 chr9 102708867 102709034 -21367138 + MIRb SINE MIR 24 195 -73 4 1368 615 233 52 8 chr9 102709157 102709291 -21366881 + B1F SINE Alu 1 140 -9 4 1368 213 245 0 0 chr9 102709291 102709340 -21366832 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 4 1368 557 135 0 18 chr9 102710076 102710189 -21365983 + (TCTCTG)n Simple_repeat Simple_repeat 3 113 0 4 1368 390 278 129 22 chr9 102710576 102710808 -21365364 - HAL1 LINE L1 -1 2506 2250 4 1368 360 176 0 0 chr9 102711228 102711296 -21364876 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1368 256 342 90 84 chr9 102711380 102711725 -21364447 - LTR82B Low_complexity ERVL -186 644 298 4 1368 325 111 358 41 chr9 102711681 102711790 -21364382 - B2_Mm2 SINE B2 -6 189 47 4 1368 1294 81 35 0 chr9 102711837 102712009 -21364163 - B2_Mm1t SINE B2 -14 179 2 4 1368 250 355 44 61 chr9 102712038 102712152 -21364020 - LTR82B Low_complexity ERVL -670 160 49 4 1368 440 264 29 176 chr9 102712186 102712430 -21363742 - HAL1 LINE L1 -761 1746 1539 4 1368 284 264 14 0 chr9 102712524 102712596 -21363576 - HAL1 LINE L1 -687 1820 1748 4 1368 477 346 118 81 chr9 102712775 102713284 -21362888 - HAL1 LINE L1 -1142 1365 838 4 1368 369 294 0 56 chr9 102713904 102714012 -21362160 - B4A SINE B4 0 292 191 4 1368 536 274 32 8 chr9 102714014 102714139 -21362033 + RSINE1 SINE B4 18 145 -20 4 1368 298 91 73 0 chr9 102714171 102714226 -21361946 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 4 1368 699 173 0 0 chr9 102714227 102714400 -21361772 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 1368 234 211 19 19 chr9 102714433 102714486 -21361686 - B4A SINE B4 -128 164 112 4 1368 21 0 0 0 chr9 102714526 102714547 -21361625 + AT_rich Low_complexity Low_complexity 1 21 0 4 1368 423 0 0 0 chr9 102715223 102715270 -21360902 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1368 483 18 0 0 chr9 102715270 102715325 -21360847 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1368 254 214 26 103 chr9 102715325 102715403 -21360769 - ID4 SINE ID -10 73 2 4 1368 816 153 22 0 chr9 102715456 102715593 -21360579 + B1_Mur4 SINE Alu 9 148 -2 4 1368 201 133 0 0 chr9 102715902 102715932 -21360240 + (TTTCC)n Simple_repeat Simple_repeat 4 33 0 4 1368 547 264 158 60 chr9 102716680 102717015 -21359157 + MLT1A1 LTR MaLR 1 368 -40 4 1368 269 232 93 21 chr9 102717119 102717216 -21358956 + MLT1A1 LTR MaLR 265 368 -40 4 1368 5867 203 89 14 chr9 102717224 102718486 -21357686 + Lx7 LINE L1 6011 7367 -329 4 1368 832 142 19 0 chr9 102718487 102718649 -21357523 + CT-rich Low_complexity Low_complexity 1 165 0 4 1368 1164 132 50 0 chr9 102718649 102718831 -21357341 - B2_Mm2 SINE B2 0 195 5 5 1368 555 16 0 0 chr9 102718831 102718895 -21357277 + (TTCTC)n Simple_repeat Simple_repeat 2 65 0 5 1368 206 224 0 0 chr9 102718971 102719000 -21357172 + T-rich Low_complexity Low_complexity 21 49 0 5 1368 1178 68 0 0 chr9 102719000 102719147 -21357025 - B1_Mm SINE Alu 0 147 1 5 1368 206 224 0 0 chr9 102719147 102719166 -21357006 + T-rich Low_complexity Low_complexity 2 20 0 5 1368 1063 141 78 128 chr9 102719177 102719202 -21356970 + Lx7 LINE L1 7357 7378 -318 4 1368 300 53 0 0 chr9 102719202 102719240 -21356932 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1368 1063 141 78 128 chr9 102719240 102719353 -21356819 + Lx7 LINE L1 7379 7467 -229 4 1368 1637 36 0 15 chr9 102719353 102719549 -21356623 - B2_Mm1a SINE B2 0 193 1 5 1368 1063 141 78 128 chr9 102719549 102719767 -21356405 + Lx7 LINE L1 7468 7696 0 4 1368 193 288 17 0 chr9 102719850 102719909 -21356263 + MIRb SINE MIR 209 268 0 5 1368 1728 145 11 112 chr9 102719928 102720294 -21355878 + ORR1A4 LTR MaLR 1 329 0 5 1368 434 252 74 16 chr9 102720772 102720893 -21355279 + LTR85b LTR Gypsy? 1 128 -656 5 1368 229 375 125 44 chr9 102720917 102721277 -21354895 + LTR85b LTR Gypsy? 181 569 -215 5 1368 252 122 0 0 chr9 102722248 102722289 -21353883 + (GGA)n Simple_repeat Simple_repeat 1 41 0 5 1368 192 289 38 19 chr9 102723390 102723443 -21352729 - MIRc SINE MIR -204 64 11 5 1368 1160 56 0 0 chr9 102723625 102723768 -21352404 + B1_Mus1 SINE Alu 6 148 0 5 1368 208 87 64 21 chr9 102723768 102723815 -21352357 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 5 1368 197 0 0 67 chr9 102724138 102724168 -21352004 + (CTAA)n Simple_repeat Simple_repeat 4 31 0 5 1368 277 320 62 72 chr9 102724184 102724393 -21351779 - MamGypLTR1b LTR Gypsy -36 746 540 5 1368 363 23 0 0 chr9 102724486 102724530 -21351642 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1368 342 0 0 0 chr9 102724530 102724567 -21351605 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1368 543 321 35 62 chr9 102724841 102725067 -21351105 - ID_B1 SINE B4 -3 221 2 5 1368 2515 141 77 7 chr9 102725177 102725606 -21350566 - RMER1B Other Other -9 1057 599 5 1368 799 220 213 16 chr9 102726459 102726708 -21349464 + MLT2C2 LTR ERVL 36 333 -131 5 1368 27 0 0 0 chr9 102726718 102726745 -21349427 + AT_rich Low_complexity Low_complexity 1 27 0 5 1368 249 212 188 0 chr9 102726846 102726926 -21349246 + MLT2C2 LTR ERVL 445 539 -20 5 1368 189 0 0 0 chr9 102727252 102727273 -21348899 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1368 183 100 0 0 chr9 102727289 102727319 -21348853 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1368 979 45 8 8 chr9 102727568 102727702 -21348470 + (TTCCC)n Simple_repeat Simple_repeat 4 137 0 5 1368 1132 75 0 0 chr9 102727707 102727853 -21348319 - B1_Mus2 SINE Alu 0 147 2 5 1368 1575 222 122 11 chr9 102727861 102728221 -21347951 + MTD LTR MaLR 20 419 0 5 1368 349 329 41 122 chr9 102728274 102728544 -21347628 - L1MC LINE L1 -2246 5636 5389 5 1368 861 211 70 0 chr9 102728546 102728717 -21347455 + B3 SINE B2 32 214 -2 5 1368 788 240 77 0 chr9 102729488 102729671 -21346501 + B3 SINE B2 3 199 -17 5 1368 251 229 301 8 chr9 102729792 102729912 -21346260 - MLT1J2 LTR MaLR -339 173 14 5 1368 478 358 52 43 chr9 102730033 102730378 -21345794 - L1MC LINE L1 -2123 5759 5412 5 1368 1002 223 19 5 chr9 102730516 102730723 -21345449 + B3 SINE B2 2 211 -5 5 1368 1193 64 0 0 chr9 102730733 102730874 -21345298 + B1_Mus2 SINE Alu 1 141 -6 5 1368 237 218 0 0 chr9 102730889 102730967 -21345205 + A-rich Low_complexity Low_complexity 1 78 0 5 1368 1017 284 10 69 chr9 102731034 102731340 -21344832 - B4A SINE B4 0 292 5 5 1368 207 0 0 0 chr9 102731670 102731693 -21344479 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 5 1368 603 207 116 23 chr9 102731704 102731877 -21344295 + B2_Mm2 SINE B2 1 189 -6 5 1368 1364 75 21 31 chr9 102731881 102732073 -21344099 + B2_Mm2 SINE B2 2 191 -4 5 1368 327 261 190 0 chr9 102732073 102732215 -21343957 - Charlie5 DNA MER1_type -88 2536 2368 5 1368 228 271 42 14 chr9 102732856 102732927 -21343245 - RSINE1 SINE B4 -90 75 3 5 1368 1262 215 180 12 chr9 102733147 102733481 -21342691 - MTD LTR MaLR -29 390 1 5 1368 353 311 138 34 chr9 102734534 102734803 -21341369 - L2 LINE L2 -381 3038 2742 5 1368 344 289 71 39 chr9 102734913 102735068 -21341104 - MER5A DNA MER1_type -25 164 5 5 1368 273 315 134 30 chr9 102735342 102735476 -21340696 - MIRb SINE MIR -50 218 71 5 1368 996 109 0 7 chr9 102736495 102736633 -21339539 + B1_Mur1 SINE Alu 2 138 -11 5 1368 216 0 0 0 chr9 102736633 102736657 -21339515 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1368 224 208 21 0 chr9 102737170 102737218 -21338954 + (CG)n Simple_repeat Simple_repeat 1 49 0 5 1368 35 92 0 0 chr9 102737327 102737425 -21338747 + GC_rich Low_complexity Low_complexity 1 98 0 5 1368 192 158 0 0 chr9 102737435 102737473 -21338699 + (CTG)n Simple_repeat Simple_repeat 3 40 0 5 1368 23 54 0 0 chr9 102737473 102737510 -21338662 + GC_rich Low_complexity Low_complexity 1 37 0 5 1368 195 42 0 0 chr9 102737629 102737653 -21338519 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 1368 290 132 19 0 chr9 102738272 102738325 -21337847 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1368 255 31 0 0 chr9 102738335 102738367 -21337805 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1368 546 172 19 39 chr9 102738369 102738472 -21337700 - B1_Mur2 SINE Alu 0 149 49 5 1368 618 248 13 40 chr9 102738932 102739083 -21337089 - RSINE1 SINE B4 -13 152 6 5 1368 180 229 167 0 chr9 102739145 102739193 -21336979 - MIRc SINE MIR -130 138 83 5 1368 470 208 99 125 chr9 102740130 102740155 -21336017 - B2_Mm2 SINE B2 0 195 178 5 1368 6261 22 8 3 chr9 102740155 102740869 -21335303 + L1Md_F2 LINE L1 5853 6570 -12 5 1368 703 194 26 33 chr9 102740869 102741035 -21335137 - B3 SINE B2 -18 177 9 5 1368 492 280 119 15 chr9 102741433 102741694 -21334478 - HAL1 LINE L1 -744 1763 1476 5 1368 320 318 89 126 chr9 102741981 102742531 -21333641 - HAL1 LINE L1 -1508 999 470 5 1368 988 288 77 12 chr9 102742899 102743223 -21332949 - MLT1A0 LTR MaLR -20 345 1 5 1368 180 111 0 0 chr9 102743939 102743966 -21332206 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1368 212 59 29 0 chr9 102744086 102744120 -21332052 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 5 1368 195 341 175 42 chr9 102744152 102744369 -21331803 - L2c LINE L2 -216 3171 2926 5 1368 225 254 44 15 chr9 102744415 102744483 -21331689 + PB1D10 SINE Alu 32 101 -16 5 1368 256 295 115 10 chr9 102745922 102746018 -21330154 - PB1D10 SINE Alu -32 117 12 5 1368 498 234 54 0 chr9 102745954 102746065 -21330107 - ID_B1 SINE B4 -67 157 41 5 1368 1000 134 7 0 chr9 102746440 102746589 -21329583 - B1_Mur4 SINE Alu 0 150 1 5 1368 1046 208 43 0 chr9 102746627 102746834 -21329338 + B3 SINE B2 1 216 0 5 1368 21 0 0 0 chr9 102746837 102746858 -21329314 + AT_rich Low_complexity Low_complexity 1 21 0 5 1368 353 302 51 8 chr9 102746881 102746998 -21329174 + RSINE1 SINE B4 3 124 -41 5 1368 294 167 50 89 chr9 102747051 102747173 -21328999 - L1MC3 LINE L1 -1651 6134 6030 5 1368 226 250 13 126 chr9 102747284 102747435 -21328737 - L1MEc LINE L1 -5303 1097 964 5 1368 577 25 25 0 chr9 102747577 102747656 -21328516 + (TG)n Simple_repeat Simple_repeat 1 81 0 5 1368 894 254 32 18 chr9 102747658 102747875 -21328297 - B4A SINE B4 -70 222 3 5 1368 206 232 36 0 chr9 102747887 102747943 -21328229 + T-rich Low_complexity Low_complexity 3 60 0 5 1368 772 241 157 15 chr9 102748033 102748294 -21327878 - L1MEc LINE L1 -5618 782 485 5 1368 462 316 22 7 chr9 102748416 102748553 -21327619 - RSINE1 SINE B4 -16 149 11 5 1368 970 266 84 81 chr9 102748959 102749147 -21327025 + MTD LTR MaLR 24 209 -210 5 1368 875 152 22 0 chr9 102749147 102749285 -21326887 + B1_Mur4 SINE Alu 1 141 -9 5 1368 970 266 84 81 chr9 102749285 102749477 -21326695 + MTD LTR MaLR 210 405 -14 5 1368 309 68 0 0 chr9 102750937 102750981 -21325191 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 5 1368 21 0 0 0 chr9 102751285 102751306 -21324866 + AT_rich Low_complexity Low_complexity 1 21 0 5 1368 294 291 83 51 chr9 102751554 102751710 -21324462 - MIR3 SINE MIR -3 205 45 5 1368 594 90 71 18 chr9 102752450 102752619 -21323553 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 5 1368 185 108 27 0 chr9 102752638 102752675 -21323497 + (CCTA)n Simple_repeat Simple_repeat 2 39 0 5 1368 222 37 0 0 chr9 102752682 102752709 -21323463 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1368 1274 266 157 16 chr9 102752823 102753483 -21322689 - L1MB5 LINE L1 -231 5943 5181 5 1368 312 48 0 0 chr9 102753483 102753525 -21322647 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1368 475 266 70 124 chr9 102753525 102753604 -21322568 - L1MB5 LINE L1 -966 5180 5120 5 1368 915 142 13 7 chr9 102753604 102753753 -21322419 - B1_Mur4 SINE Alu 0 150 1 5 1368 475 266 70 124 chr9 102753753 102753867 -21322305 - L1MB5 LINE L1 -1027 5119 5023 5 1368 571 40 13 0 chr9 102753882 102753957 -21322215 - B1_Mm SINE Alu 0 147 72 5 1368 422 236 73 0 chr9 102753958 102754081 -21322091 - L1MB5 LINE L1 -1111 5035 4904 5 1368 803 168 0 35 chr9 102754147 102754289 -21321883 - B1_Mur4 SINE Alu -9 141 5 5 1368 359 214 119 41 chr9 102754383 102754602 -21321570 - Lx9 LINE L1 0 7644 7409 5 1368 2991 144 91 6 chr9 102754596 102755114 -21321058 - Lx9 LINE L1 -341 7303 6742 5 1368 1165 243 80 12 chr9 102755098 102755510 -21320662 - L1MB5 LINE L1 -1363 4783 4344 5 1368 21 71 0 0 chr9 102756207 102756249 -21319923 + AT_rich Low_complexity Low_complexity 1 42 0 5 1368 25 0 0 0 chr9 102756560 102756585 -21319587 + AT_rich Low_complexity Low_complexity 1 25 0 5 1368 308 369 79 20 chr9 102756585 102756737 -21319435 - RSINE1 SINE B4 -2 163 3 5 1368 254 288 48 36 chr9 102756741 102756824 -21319348 - B1F SINE Alu 0 149 66 5 1368 941 180 113 0 chr9 102757062 102757256 -21318916 - B3 SINE B2 0 216 1 5 1368 1574 183 121 15 chr9 102758552 102758890 -21317282 - ORR1D1 LTR MaLR 0 374 1 5 1368 396 0 0 0 chr9 102759001 102759045 -21317127 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1368 331 250 129 65 chr9 102759045 102759169 -21317003 - B1_Mur1 SINE Alu -13 136 5 5 1368 2041 121 99 25 chr9 102759254 102759626 -21316546 - ORR1B1 LTR MaLR -8 386 1 5 1368 666 111 0 38 chr9 102759885 102760016 -21316156 + (TCCC)n Simple_repeat Simple_repeat 3 128 0 6 1368 419 291 89 37 chr9 102760031 102760306 -21315866 - MTE2b LTR MaLR -9 370 58 6 1368 375 195 39 142 chr9 102760234 102760305 -21315867 - B4A SINE B4 -67 225 87 6 1368 509 159 0 24 chr9 102760305 102760389 -21315783 - B1_Mur4 SINE Alu -67 83 2 6 1369 373 265 78 45 chr9 102760506 102760660 -21315512 - Tigger9a DNA Tigger -1 731 573 6 1369 1051 196 0 0 chr9 102760949 102761122 -21315050 + B3A SINE B2 1 173 -25 6 1369 1167 258 149 32 chr9 102761157 102761813 -21314359 - L1ME2 LINE L1 -75 6089 5357 6 1369 231 297 58 35 chr9 102762102 102762273 -21313899 - L1M4 LINE L1 -2024 4122 3948 6 1369 566 258 38 8 chr9 102762306 102762439 -21313733 - ID_B1 SINE B4 -3 221 85 6 1369 770 198 124 5 chr9 102762835 102762867 -21313305 - B3 SINE B2 0 216 183 6 1369 339 25 0 0 chr9 102762867 102762907 -21313265 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1369 770 198 124 5 chr9 102762907 102763067 -21313105 - B3 SINE B2 -34 182 1 6 1369 186 330 32 74 chr9 102763745 102763840 -21312332 - L4 LINE RTE -903 1126 1036 6 1369 416 154 45 23 chr9 102765260 102765393 -21310779 + C-rich Low_complexity Low_complexity 2 137 0 6 1369 534 195 187 0 chr9 102765407 102765530 -21310642 - B1_Mm SINE Alu -1 146 1 6 1369 193 269 19 0 chr9 102765991 102766043 -21310129 - MIR SINE MIR -64 144 92 6 1369 688 220 0 15 chr9 102769617 102769751 -21306421 - B1_Mur1 SINE Alu -1 148 17 6 1369 360 221 91 0 chr9 102770042 102770132 -21306040 - MTD LTR MaLR -248 173 41 6 1369 1450 63 0 82 chr9 102770606 102770814 -21305358 - B2_Mm2 SINE B2 -3 192 2 6 1369 1380 91 16 0 chr9 102772255 102772441 -21303731 - B2_Mm2 SINE B2 -6 189 1 6 1369 25 0 0 0 chr9 102772806 102772831 -21303341 + AT_rich Low_complexity Low_complexity 1 25 0 6 1369 203 342 52 43 chr9 102772879 102772995 -21303177 - MIR3 SINE MIR -21 187 71 6 1369 690 149 28 17 chr9 102772995 102773172 -21303000 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 6 1369 330 146 37 0 chr9 102773197 102773279 -21302893 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 6 1369 538 254 35 7 chr9 102773365 102773508 -21302664 - B1F1 SINE Alu -2 147 1 6 1369 1114 288 20 66 chr9 102774482 102774783 -21301389 + B4A SINE B4 6 292 0 6 1369 333 125 0 0 chr9 102774785 102774841 -21301331 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1369 243 0 0 0 chr9 102774853 102774880 -21301292 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1369 423 243 300 0 chr9 102774889 102775039 -21301133 - ID_B1 SINE B4 -28 196 2 6 1369 244 247 21 31 chr9 102775466 102775562 -21300610 - L1MC5 LINE L1 -329 7632 7538 6 1369 201 147 0 0 chr9 102775603 102775637 -21300535 + (TTC)n Simple_repeat Simple_repeat 2 35 0 6 1369 1408 58 37 0 chr9 102775641 102775829 -21300343 - B2_Mm2 SINE B2 0 195 1 6 1369 486 125 0 0 chr9 102775835 102775915 -21300257 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 6 1369 1372 97 0 10 chr9 102775921 102776119 -21300053 - L1Md_F2 LINE L1 0 6582 6387 6 1369 307 302 132 13 chr9 102776155 102776306 -21299866 - L1MC5 LINE L1 -532 7429 7261 6 1369 210 37 0 0 chr9 102776369 102776396 -21299776 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1369 473 82 0 0 chr9 102776407 102776468 -21299704 - B1_Mus2 SINE Alu -21 126 66 6 1369 648 0 0 0 chr9 102776472 102776544 -21299628 + (TCCCC)n Simple_repeat Simple_repeat 5 76 0 6 1369 438 0 48 0 chr9 102776546 102776608 -21299564 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1369 210 287 126 27 chr9 102776717 102776828 -21299344 - L2b LINE L2 -16 3359 3238 6 1369 351 44 0 0 chr9 102777412 102777457 -21298715 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1369 268 361 61 7 chr9 102777604 102777752 -21298420 - MER3 DNA MER1_type -5 204 49 6 1369 313 97 16 31 chr9 102778517 102778581 -21297591 + (TCCC)n Simple_repeat Simple_repeat 1 63 0 6 1369 537 243 224 12 chr9 102779342 102779662 -21296510 - MTD LTR MaLR -14 405 18 6 1369 331 167 56 0 chr9 102779870 102779942 -21296230 - PB1D10 SINE Alu 0 117 42 6 1369 233 338 13 0 chr9 102780182 102780259 -21295913 + MIR SINE MIR 4 81 -181 6 1369 540 81 0 0 chr9 102781119 102781193 -21294979 + (TCC)n Simple_repeat Simple_repeat 2 75 0 6 1369 567 138 147 0 chr9 102781201 102781317 -21294855 - B1_Mur3 SINE Alu 0 149 17 6 1369 323 260 62 0 chr9 102781614 102781710 -21294462 + L2a LINE L2 3321 3422 -4 6 1369 185 235 19 38 chr9 102782524 102782577 -21293595 - MIRc SINE MIR -143 125 74 6 1369 900 174 0 7 chr9 102784553 102784698 -21291474 - B1_Mus2 SINE Alu -3 144 1 6 1369 648 0 0 0 chr9 102784719 102784791 -21291381 + (TTTCC)n Simple_repeat Simple_repeat 4 75 0 6 1369 444 118 0 0 chr9 102784791 102784859 -21291313 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 6 1369 312 211 41 27 chr9 102784862 102784935 -21291237 - ID4 SINE ID -6 77 4 6 1369 410 261 177 32 chr9 102784968 102785126 -21291046 - B3A SINE B2 -16 182 2 6 1369 228 280 13 13 chr9 102785129 102785205 -21290967 - B1F SINE Alu 0 149 74 6 1369 210 71 0 0 chr9 102785273 102785301 -21290871 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1369 935 189 0 0 chr9 102785311 102785459 -21290713 - B1_Mus1 SINE Alu 0 148 1 6 1369 669 132 35 0 chr9 102785582 102785696 -21290476 + ORR1C2 LTR MaLR 266 383 -1 6 1369 714 55 0 0 chr9 102785803 102785894 -21290278 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1369 801 120 78 48 chr9 102785898 102786064 -21290108 - ORR1C2 LTR MaLR -213 171 1 6 1369 316 277 29 19 chr9 102786080 102786183 -21289989 + L1MC5 LINE L1 6701 6804 -1157 6 1369 232 300 107 18 chr9 102786410 102786522 -21289650 + L1MC5 LINE L1 7103 7224 -818 6 1369 761 215 56 10 chr9 102787132 102787329 -21288843 - B3 SINE B2 -10 206 1 6 1369 920 176 0 7 chr9 102787393 102787542 -21288630 + B1_Mur1 SINE Alu 2 149 0 6 1369 462 250 46 0 chr9 102787565 102787673 -21288499 + PB1D10 SINE Alu 5 117 0 6 1369 547 185 369 0 chr9 102787991 102788148 -21288024 - B3 SINE B2 -1 215 1 6 1369 890 162 96 40 chr9 102791540 102791739 -21284433 - B3 SINE B2 0 216 7 6 1369 573 249 103 56 chr9 102791744 102791957 -21284215 - B4 SINE B4 -63 229 7 6 1369 329 232 0 0 chr9 102793120 102793189 -21282983 + PB1D10 SINE Alu 34 102 -15 6 1369 195 42 0 0 chr9 102793512 102793536 -21282636 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1369 231 209 43 29 chr9 102793730 102793799 -21282373 - L1ME4a LINE L1 -1 6123 6054 6 1369 504 105 0 0 chr9 102794043 102794119 -21282053 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1369 347 200 252 0 chr9 102794510 102794625 -21281547 - B1_Mm SINE Alu -3 144 1 6 1369 298 285 63 12 chr9 102794657 102794787 -21281385 + B4 SINE B4 71 208 -84 6 1369 213 241 0 0 chr9 102795645 102795699 -21280473 + GA-rich Low_complexity Low_complexity 3 56 0 6 1369 238 342 0 13 chr9 102795869 102795946 -21280226 - L4 LINE RTE -864 1165 1090 6 1369 21 0 0 0 chr9 102796286 102796307 -21279865 + AT_rich Low_complexity Low_complexity 1 21 0 6 1369 1509 47 0 30 chr9 102796317 102796516 -21279656 - B2_Mm2 SINE B2 -1 194 2 6 1369 289 82 49 0 chr9 102796830 102796891 -21279281 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 1369 832 213 26 21 chr9 102797206 102797398 -21278774 - B3 SINE B2 -10 206 14 6 1369 309 82 0 0 chr9 102797591 102797640 -21278532 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1369 1436 69 27 0 chr9 102798021 102798209 -21277963 - B2_Mm2 SINE B2 -1 194 2 6 1369 683 167 83 0 chr9 102798382 102798502 -21277670 - B3 SINE B2 -86 130 1 6 1369 294 73 0 0 chr9 102798746 102798787 -21277385 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1369 255 31 0 0 chr9 102798946 102798978 -21277194 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1369 240 35 0 0 chr9 102799003 102799032 -21277140 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1369 198 0 0 0 chr9 102800458 102800480 -21275692 + (TGG)n Simple_repeat Simple_repeat 2 23 0 6 1369 464 168 115 25 chr9 102802147 102802269 -21273903 + MYSERV16_I-int LTR ERVK 2192 2324 -2 6 1369 2658 179 37 12 chr9 102802274 102802787 -21273385 + RLTR11A2 LTR ERVK 2 527 0 6 1369 920 143 7 0 chr9 102802787 102802927 -21273245 - Lx7 LINE L1 -923 6773 6633 6 1369 924 145 33 7 chr9 102802919 102803072 -21273100 - Lx7 LINE L1 -1417 6279 6123 6 1369 320 213 104 5 chr9 102803157 102803242 -21272930 - B1F SINE Alu -15 105 18 6 1369 1052 46 26 0 chr9 102803625 102803776 -21272396 + (TC)n Simple_repeat Simple_repeat 2 156 0 6 1369 530 217 19 0 chr9 102803779 102803885 -21272287 - B1_Mur3 SINE Alu -13 136 29 6 1369 418 296 30 24 chr9 102805700 102805866 -21270306 - MLT1A0 LTR MaLR -162 203 37 6 1369 473 264 28 33 chr9 102805980 102806160 -21270012 - MLT-int LTR MaLR -127 1608 1430 6 1369 214 314 23 23 chr9 102806565 102806653 -21269519 + B4A SINE B4 80 167 -125 6 1369 344 267 2 30 chr9 102806583 102806690 -21269482 + PB1D10 SINE Alu 13 119 -30 6 1369 315 0 0 0 chr9 102807132 102807167 -21269005 + (CATA)n Simple_repeat Simple_repeat 2 36 0 6 1369 203 259 0 36 chr9 102808636 102808720 -21267452 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 1369 236 200 0 0 chr9 102809818 102809868 -21266304 + A-rich Low_complexity Low_complexity 1 50 0 6 1369 332 228 22 25 chr9 102811031 102811170 -21265002 + B3 SINE B2 1 203 -13 6 1369 230 286 24 0 chr9 102811172 102811256 -21264916 + (TA)n Simple_repeat Simple_repeat 1 86 0 6 1369 225 239 0 0 chr9 102811583 102811629 -21264543 - PB1D10 SINE Alu -6 111 66 6 1369 187 31 62 0 chr9 102811710 102811742 -21264430 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1369 375 134 0 0 chr9 102811976 102812058 -21264114 + (TCTG)n Simple_repeat Simple_repeat 4 85 0 6 1369 492 99 0 0 chr9 102812113 102812184 -21263988 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 7 1369 668 152 56 0 chr9 102812184 102812309 -21263863 - B1_Mus2 SINE Alu -2 145 14 7 1369 435 241 69 204 chr9 102812307 102812475 -21263697 - B4 SINE B4 -67 225 49 7 1369 541 267 109 7 chr9 102812475 102812622 -21263550 + RSINE1 SINE B4 4 165 0 7 1369 435 241 69 204 chr9 102812622 102812713 -21263459 - B4 SINE B4 -244 48 1 7 1369 1141 192 0 37 chr9 102812872 102813088 -21263084 - B3 SINE B2 -7 209 2 7 1369 308 293 101 0 chr9 102813244 102813373 -21262799 - B1F SINE Alu -2 147 7 7 1369 593 242 137 41 chr9 102813405 102813676 -21262496 - L1ME1 LINE L1 -145 6034 5738 7 1369 281 325 34 42 chr9 102814263 102814382 -21261790 - PB1D7 SINE Alu -2 118 1 7 1369 610 245 181 26 chr9 102814406 102814632 -21261540 - B4A SINE B4 0 292 32 7 1369 3493 20 5 0 chr9 102815656 102816050 -21260122 + MTA_Mm LTR MaLR 1 396 0 7 1369 252 271 108 88 chr9 102817193 102817536 -21258636 - MTEb LTR MaLR -20 359 1 7 1369 4394 122 131 5 chr9 102818309 102819110 -21257062 - RMER19B LTR ERVK 0 902 1 7 1369 311 105 0 17 chr9 102819554 102819612 -21256560 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1369 1200 115 55 0 chr9 102819681 102819863 -21256309 - B2_Mm2 SINE B2 -2 193 2 7 1369 1108 94 6 12 chr9 102820450 102820623 -21255549 + (TTTTC)n Simple_repeat Simple_repeat 4 175 0 7 1369 1182 43 0 0 chr9 102820624 102820765 -21255407 - B1_Mus1 SINE Alu -6 142 2 7 1369 195 69 0 0 chr9 102820830 102820859 -21255313 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 7 1369 720 190 0 28 chr9 102821312 102821453 -21254719 - B1_Mur4 SINE Alu -12 138 2 7 1369 268 143 53 18 chr9 102821453 102821510 -21254662 + MTE2b LTR MaLR 321 379 0 7 1369 268 261 71 9 chr9 102821677 102821789 -21254383 + PB1D9 SINE Alu 1 119 -1 7 1369 398 291 21 14 chr9 102821948 102822091 -21254081 + ORR1E LTR MaLR 6 149 -210 7 1369 240 111 0 0 chr9 102822111 102822156 -21254016 + (TCTG)n Simple_repeat Simple_repeat 1 45 0 7 1369 714 263 24 24 chr9 102822347 102822600 -21253572 - RMER17C LTR ERVK -32 378 126 7 1369 261 326 160 0 chr9 102822781 102822925 -21253247 - MER5A DNA MER1_type -7 182 16 7 1369 29 47 0 0 chr9 102823041 102823084 -21253088 + AT_rich Low_complexity Low_complexity 1 43 0 7 1369 243 203 0 0 chr9 102823157 102823231 -21252941 + GA-rich Low_complexity Low_complexity 1 74 0 7 1369 516 283 19 26 chr9 102823247 102823403 -21252769 - RSINE1 SINE B4 -8 157 3 7 1369 1537 192 103 8 chr9 102823536 102823903 -21252269 - MTD LTR MaLR -17 402 1 7 1369 213 224 0 17 chr9 102824080 102824139 -21252033 + A-rich Low_complexity Low_complexity 4 61 0 7 1369 324 0 0 0 chr9 102824440 102824476 -21251696 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1369 1084 177 68 29 chr9 102824483 102824858 -21251314 - RLTR20C LTR ERVK -99 435 1 7 1369 397 270 39 31 chr9 102827681 102827811 -21248361 - MTE2a LTR MaLR -248 131 1 7 1369 847 283 91 100 chr9 102827820 102827839 -21248333 - L1MD2 LINE L1 -848 5696 5677 7 1369 225 0 0 0 chr9 102827839 102827864 -21248308 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 7 1369 713 221 7 0 chr9 102827864 102828000 -21248172 - B1_Mur2 SINE Alu -12 137 1 7 1369 847 283 91 100 chr9 102828000 102828536 -21247636 - L1MD2 LINE L1 -868 5676 5143 7 1369 572 303 60 28 chr9 102828536 102828818 -21247354 - B4 SINE B4 0 292 2 7 1369 847 283 91 100 chr9 102828818 102828993 -21247179 - L1MD2 LINE L1 -1402 5142 4971 7 1369 323 224 101 25 chr9 102829079 102829198 -21246974 + L1M5 LINE L1 4190 4317 -1829 7 1369 304 175 5 66 chr9 102829198 102829274 -21246898 + L1M5 LINE L1 4266 4343 -1803 7 1369 2573 113 45 28 chr9 102829274 102829674 -21246498 - MTB_Mm LTR MaLR 0 407 1 7 1369 304 177 0 72 chr9 102829674 102829693 -21246479 + L1M5 LINE L1 4339 4357 -1789 7 1369 728 112 194 31 chr9 102829693 102829822 -21246350 - B1_Mur4 SINE Alu 0 150 1 7 1369 299 217 0 102 chr9 102829822 102829863 -21246309 + L1M5 LINE L1 4358 4391 -1755 7 1369 241 299 32 107 chr9 102829893 102830080 -21246092 + MTEa LTR MaLR 203 375 -4 7 1369 400 286 166 63 chr9 102830204 102830755 -21245417 - L1MD2 LINE L1 -2318 4226 3656 7 1369 1171 75 0 0 chr9 102830755 102830902 -21245270 + B1_Mus1 SINE Alu 2 148 0 7 1369 400 286 166 63 chr9 102830902 102831393 -21244779 - L1MD2 LINE L1 -2889 3655 3077 7 1369 549 155 0 0 chr9 102831552 102831681 -21244491 + CT-rich Low_complexity Low_complexity 1 129 0 7 1369 405 0 0 0 chr9 102831682 102831727 -21244445 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1369 855 219 0 6 chr9 102831732 102831893 -21244279 - B3A SINE B2 -38 160 1 7 1369 763 336 53 24 chr9 102832257 102832632 -21243540 + Tigger9a DNA Tigger 1 386 -346 7 1369 204 40 0 0 chr9 102832808 102832833 -21243339 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1369 441 0 0 0 chr9 102833028 102833077 -21243095 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1369 297 0 0 0 chr9 102833077 102833109 -21243063 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 1369 692 12 0 12 chr9 102833142 102833228 -21242944 + (TG)n Simple_repeat Simple_repeat 1 85 0 7 1369 416 264 69 34 chr9 102833236 102833419 -21242753 - L1MD2 LINE L1 -5552 1088 903 7 1369 383 219 18 36 chr9 102833542 102833708 -21242464 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 7 1369 271 344 117 30 chr9 102833713 102833944 -21242228 - L1MD2 LINE L1 -5802 745 495 7 1369 1039 218 19 0 chr9 102833945 102834156 -21242016 + B3 SINE B2 2 216 0 7 1369 312 303 46 87 chr9 102834192 102834387 -21241785 - L1M2 LINE L1 -785 5358 5172 7 1369 213 121 0 0 chr9 102834387 102834420 -21241752 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1369 812 196 7 26 chr9 102834420 102834572 -21241600 - B1_Mur2 SINE Alu 0 149 1 7 1369 1021 196 14 28 chr9 102834637 102834852 -21241320 - B3 SINE B2 -1 215 4 7 1369 180 179 0 0 chr9 102834859 102834898 -21241274 + CT-rich Low_complexity Low_complexity 2 40 0 7 1369 238 258 16 16 chr9 102834942 102835005 -21241167 - ID4_ SINE ID -18 65 3 7 1369 648 201 90 0 chr9 102835216 102835350 -21240822 + B1F1 SINE Alu 4 149 0 7 1369 645 279 91 51 chr9 102835572 102835825 -21240347 + MER2 DNA MER2_type 59 321 -24 7 1369 507 284 13 25 chr9 102835958 102836117 -21240055 - RSINE1 SINE B4 -6 159 3 7 1369 243 0 0 0 chr9 102836551 102836578 -21239594 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1369 485 219 244 24 chr9 102837331 102837495 -21238677 - RCHARR1 DNA MER1_type -15 959 760 7 1369 800 290 129 83 chr9 102837520 102837930 -21238242 - RCHARR1 DNA MER1_type -545 429 1 7 1369 4537 103 12 11 chr9 102838383 102839049 -21237123 - Lx LINE L1 -3 6651 5985 7 1369 333 0 0 0 chr9 102839177 102839214 -21236958 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1369 257 276 0 0 chr9 102839244 102839302 -21236870 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1369 322 295 11 50 chr9 102839445 102839576 -21236596 + RMER4A LTR ERVK 8 133 -452 7 1369 273 337 99 0 chr9 102840108 102840209 -21235963 + MER90 LTR ERV1 465 575 0 7 1369 539 171 33 25 chr9 102841655 102841775 -21234397 + BC1_Mm scRNA scRNA 1 121 -31 7 1369 260 308 0 0 chr9 102841828 102841893 -21234279 - ID SINE ID -137 87 23 7 1369 271 288 0 0 chr9 102841841 102841900 -21234272 - ID4_ SINE ID -10 73 15 7 1369 1915 188 65 10 chr9 102841968 102842365 -21233807 + MTD LTR MaLR 1 419 0 7 1369 1242 142 28 33 chr9 102842621 102842832 -21233340 + URR1A DNA MER1_type 16 225 -1 7 1369 309 301 39 10 chr9 102843035 102843139 -21233033 - L1MEg LINE L1 -4140 1944 1838 7 1369 665 178 19 0 chr9 102843208 102843315 -21232857 + B1_Mur2 SINE Alu 13 121 -28 7 1369 957 209 86 0 chr9 102843649 102843836 -21232336 + B3 SINE B2 4 206 -10 7 1369 1241 213 52 116 chr9 102844996 102845400 -21230772 - MTEa LTR MaLR -1 378 1 7 1369 964 117 6 16 chr9 102845506 102845688 -21230484 + (GGA)n Simple_repeat Simple_repeat 1 180 0 7 1369 237 163 0 0 chr9 102845693 102845742 -21230430 + GA-rich Low_complexity Low_complexity 3 51 0 7 1369 908 299 76 35 chr9 102846788 102847240 -21228932 + MLT2B2 LTR ERVL 3 515 -5 7 1369 679 163 82 37 chr9 102847454 102847588 -21228584 - B1_Mur2 SINE Alu -2 147 8 7 1369 318 267 19 65 chr9 102847504 102847612 -21228560 - MT2B LTR ERVL -346 255 153 7 1369 306 375 63 42 chr9 102847769 102848103 -21228069 + MLT1J-int LTR MaLR 17 357 -1030 7 1369 236 67 0 62 chr9 102848681 102848729 -21227443 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1369 237 324 45 45 chr9 102849233 102849388 -21226784 + Lx8 LINE L1 34 188 -6212 7 1369 620 286 132 84 chr9 102849426 102849828 -21226344 + Lx8 LINE L1 254 708 -5692 7 1369 402 304 24 77 chr9 102849828 102850035 -21226137 + B3A SINE B2 1 196 -2 7 1369 620 286 132 84 chr9 102850035 102850278 -21225894 + Lx8 LINE L1 709 930 -5470 7 1369 340 251 159 70 chr9 102850695 102850963 -21225209 + Lx8 LINE L1 1553 1860 -4540 7 1369 1017 84 0 8 chr9 102851083 102851215 -21224957 - B1_Mus2 SINE Alu -15 132 2 7 1369 202 173 0 55 chr9 102851295 102851350 -21224822 + CT-rich Low_complexity Low_complexity 1 52 0 7 1369 239 216 0 38 chr9 102851368 102851421 -21224751 + Lx8 LINE L1 5535 5585 -772 7 1369 229 311 57 32 chr9 102851455 102851578 -21224594 - Lx8 LINE L1 -2 7471 7346 7 1369 426 120 0 0 chr9 102851584 102851659 -21224513 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 7 1369 2024 249 83 20 chr9 102851660 102852383 -21223789 - Lx8 LINE L1 -125 7348 6580 7 1369 407 295 55 10 chr9 102852397 102852594 -21223578 + Lx8 LINE L1 5557 5795 -675 7 1369 330 156 0 0 chr9 102852594 102852658 -21223514 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 7 1369 954 284 78 7 chr9 102852671 102852979 -21223193 + Lx8 LINE L1 5769 6098 -1548 7 1369 256 349 36 54 chr9 102854424 102854446 -21221726 + B4 SINE B4 181 202 -90 7 1369 822 186 65 93 chr9 102854446 102854660 -21221512 - B3 SINE B2 -7 209 2 7 1369 256 349 36 54 chr9 102854660 102854749 -21221423 + B4 SINE B4 203 290 -2 7 1369 678 296 132 28 chr9 102854950 102855343 -21220829 - L1ME1 LINE L1 -19 6160 5727 7 1369 1188 81 0 0 chr9 102855390 102855538 -21220634 - B1_Mus1 SINE Alu 0 148 1 7 1369 308 304 0 89 chr9 102855552 102855664 -21220508 - L1MD LINE L1 -912 5234 5133 7 1369 729 88 0 0 chr9 102855665 102855767 -21220405 + (TTTC)n Simple_repeat Simple_repeat 1 102 0 7 1369 1299 78 0 6 chr9 102855770 102855938 -21220234 - B2_Mm2 SINE B2 -27 168 2 7 1369 1628 47 10 0 chr9 102855991 102856183 -21219989 - B2_Mm2 SINE B2 -1 194 1 7 1369 488 297 37 47 chr9 102856190 102856381 -21219791 - L1ME1 LINE L1 -1098 5048 4860 7 1369 1114 166 59 0 chr9 102856463 102856650 -21219522 - B3 SINE B2 -17 199 2 7 1369 1486 255 76 38 chr9 102856650 102857045 -21219127 + MTD LTR MaLR 10 419 0 7 1369 810 282 93 26 chr9 102857128 102857634 -21218538 - L1ME1 LINE L1 -1455 4691 4152 7 1369 237 333 44 0 chr9 102857635 102857725 -21218447 + L2 LINE L2 2805 2898 -521 8 1369 3287 60 2 2 chr9 102857936 102858335 -21217837 - MTB LTR MaLR 0 400 2 8 1369 201 227 224 13 chr9 102858610 102858686 -21217486 - L2b LINE L2 -44 3331 3240 8 1369 3431 28 5 0 chr9 102858744 102859138 -21217034 + MTA_Mm LTR MaLR 1 396 0 8 1369 9112 38 6 1 chr9 102859138 102860231 -21215941 + MTA_Mm-int LTR MaLR 1 1098 0 8 1369 3431 28 5 0 chr9 102860231 102860625 -21215547 + MTA_Mm LTR MaLR 1 396 0 8 1369 200 331 118 24 chr9 102860968 102861095 -21215077 - MIRb SINE MIR -93 175 37 8 1369 224 355 13 13 chr9 102861907 102861984 -21214188 + MER5B DNA MER1_type 5 81 -97 8 1369 545 0 15 0 chr9 102863101 102863166 -21213006 + (GA)n Simple_repeat Simple_repeat 2 67 0 8 1369 1182 151 14 50 chr9 102863167 102863532 -21212640 + RMER17C LTR ERVK 8 410 0 8 1369 304 192 9 37 chr9 102863645 102863753 -21212419 + GA-rich Low_complexity Low_complexity 4 108 0 8 1369 443 246 59 34 chr9 102864445 102864563 -21211609 - PB1 SINE Alu -2 125 5 8 1369 305 296 143 0 chr9 102865417 102865515 -21210657 + Charlie2b DNA MER1_type 1241 1352 -1430 8 1369 397 379 37 54 chr9 102865991 102866287 -21209885 - B4A SINE B4 -1 291 1 8 1369 404 258 69 25 chr9 102866678 102866837 -21209335 - L1MC5 LINE L1 -481 7480 7315 8 1369 34 0 0 0 chr9 102866900 102866934 -21209238 + AT_rich Low_complexity Low_complexity 1 34 0 8 1369 494 286 107 0 chr9 102867001 102867141 -21209031 + RSINE1 SINE B4 3 157 -8 8 1369 332 282 68 68 chr9 102867488 102867606 -21208566 - LTR40c LTR ERVL -145 320 203 8 1369 279 287 47 121 chr9 102867783 102867973 -21208199 - L1MC5 LINE L1 -1018 6943 6768 8 1369 258 136 0 0 chr9 102868177 102868221 -21207951 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1369 639 276 43 86 chr9 102868249 102868311 -21207861 - B4A SINE B4 -4 288 227 8 1369 270 0 0 0 chr9 102868311 102868341 -21207831 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1369 639 276 43 86 chr9 102868341 102868579 -21207593 - B4A SINE B4 -66 226 1 8 1369 999 117 21 0 chr9 102868625 102868770 -21207402 + B1_Mur4 SINE Alu 3 150 0 8 1369 639 290 89 58 chr9 102868812 102869138 -21207034 + ORR1E LTR MaLR 23 358 -1 8 1369 268 267 48 29 chr9 102869284 102869388 -21206784 - L1MC5 LINE L1 -2146 5736 5631 8 1369 21 0 0 0 chr9 102869558 102869579 -21206593 + AT_rich Low_complexity Low_complexity 1 21 0 8 1369 2664 145 2 12 chr9 102869764 102870189 -21205983 + MTC LTR MaLR 1 421 0 8 1369 278 265 147 20 chr9 102870217 102870367 -21205805 + Charlie2b DNA MER1_type 2581 2749 -33 8 1369 286 271 95 86 chr9 102870246 102870456 -21205716 + YREP_Mm Unknown Unknown 82 293 -1519 8 1369 450 306 27 0 chr9 102870362 102870473 -21205699 - ID_B1 SINE B4 -23 201 88 8 1369 1323 299 70 37 chr9 102870525 102871143 -21205029 + L1MA8 LINE L1 5481 6118 -173 8 1369 223 343 0 103 chr9 102871176 102871194 -21204978 + ID2 SINE ID 1 18 -65 8 1369 3251 51 2 5 chr9 102871194 102871591 -21204581 + MTA_Mm LTR MaLR 1 396 0 8 1369 7508 73 22 70 chr9 102871591 102872745 -21203427 + MTA_Mm-int LTR MaLR 1 1098 0 8 1369 3235 55 0 8 chr9 102872745 102873144 -21203028 + MTA_Mm LTR MaLR 1 396 0 8 1369 284 291 45 23 chr9 102873144 102873232 -21202940 + BC1_Mm scRNA scRNA 14 103 -49 8 1369 306 0 0 0 chr9 102873336 102873370 -21202802 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1369 183 338 25 12 chr9 102873496 102873577 -21202595 + MIRb SINE MIR 25 106 -162 8 1369 432 319 9 0 chr9 102873754 102873867 -21202305 + MER81 DNA AcHobo 1 114 0 8 1369 957 122 247 11 chr9 102873957 102874139 -21202033 - URR1B DNA MER1_type 0 225 1 8 1369 1010 247 41 26 chr9 102874287 102874557 -21201615 + B4 SINE B4 1 274 -18 8 1369 198 0 0 0 chr9 102874586 102874608 -21201564 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1369 455 299 173 46 chr9 102874688 102875035 -21201137 - Charlie13a DNA Charlie -79 1435 1045 8 1369 340 252 144 29 chr9 102875134 102875273 -21200899 - Charlie13a DNA Charlie -634 880 726 8 1369 23 0 0 0 chr9 102875842 102875865 -21200307 + AT_rich Low_complexity Low_complexity 1 23 0 8 1369 3342 49 2 15 chr9 102876311 102876723 -21199449 - MTB_Mm LTR MaLR 0 407 1 8 1369 279 79 0 0 chr9 102877612 102877650 -21198522 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 8 1369 1142 133 12 0 chr9 102877754 102877927 -21198245 + URR1A DNA MER1_type 52 226 0 8 1369 270 0 0 0 chr9 102877995 102878025 -21198147 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1369 396 0 0 0 chr9 102878629 102878673 -21197499 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1369 323 265 136 48 chr9 102879225 102879328 -21196844 + RSINE1 SINE B4 3 114 -51 8 1369 412 286 81 7 chr9 102879647 102879795 -21196377 - MER20 DNA MER1_type -60 159 1 8 1369 396 0 0 0 chr9 102879859 102879903 -21196269 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1369 699 141 372 0 chr9 102881076 102881232 -21194940 - B3 SINE B2 -1 215 2 8 1369 3846 133 19 57 chr9 102882320 102882987 -21193185 - RLTR26 LTR ERVK 0 642 1 8 1369 516 182 24 32 chr9 102884318 102884443 -21191729 + L2 LINE L2 2525 2648 -771 8 1369 2658 133 0 19 chr9 102884707 102885122 -21191050 + MTB_Mm LTR MaLR 1 407 0 8 1369 1044 139 0 0 chr9 102885543 102885715 -21190457 + (TTCC)n Simple_repeat Simple_repeat 1 172 0 8 1369 284 323 40 10 chr9 102885715 102885815 -21190357 - PB1D10 SINE Alu -12 105 3 8 1369 259 114 91 0 chr9 102885892 102885936 -21190236 + MTD LTR MaLR 372 419 0 8 1369 287 369 41 6 chr9 102886102 102886271 -21189901 + L2a LINE L2 3249 3423 -3 8 1369 621 314 73 43 chr9 102886887 102887256 -21188916 + MLT1B LTR MaLR 6 385 -5 8 1369 1542 177 161 6 chr9 102889240 102889564 -21186608 - ORR1D1 LTR MaLR 0 374 1 8 1369 204 216 0 0 chr9 102890045 102890082 -21186090 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 8 1369 377 20 20 0 chr9 102890435 102890485 -21185687 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1369 270 0 0 0 chr9 102890700 102890730 -21185442 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1370 665 184 0 34 chr9 102891733 102891998 -21184174 + (CA)n Simple_repeat Simple_repeat 1 255 0 8 1370 309 228 132 118 chr9 102892619 102892763 -21183409 + MER53 DNA hAT 48 193 0 8 1370 1283 203 20 60 chr9 102894224 102894476 -21181696 + 7SK RNA RNA 1 242 -89 8 1370 461 306 41 71 chr9 102895719 102895823 -21180349 + RSINE1 SINE B4 2 112 -53 8 1370 405 0 0 0 chr9 102895823 102895868 -21180304 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1370 324 0 0 0 chr9 102895868 102895903 -21180269 + (GA)n Simple_repeat Simple_repeat 2 37 0 8 1370 461 306 41 71 chr9 102895903 102895966 -21180206 + RSINE1 SINE B4 113 164 -1 8 1370 540 206 5 0 chr9 102895971 102896192 -21179980 + (CA)n Simple_repeat Simple_repeat 1 222 0 8 1370 484 311 60 18 chr9 102896502 102896669 -21179503 + MER5A DNA MER1_type 16 189 0 8 1370 628 280 70 30 chr9 102897496 102897695 -21178477 - Tigger7 DNA MER2_type -8 2483 2277 8 1370 255 264 0 0 chr9 102897729 102897782 -21178390 - MTEb LTR MaLR -4 375 323 8 1370 235 307 54 23 chr9 102897775 102897905 -21178267 - Tigger7 DNA MER2_type -233 2258 2125 8 1370 639 289 107 24 chr9 102898005 102898257 -21177915 - MTE2b LTR MaLR -67 312 40 8 1370 189 279 0 0 chr9 102898684 102898727 -21177445 + L2b LINE L2 3333 3375 0 8 1370 231 373 61 45 chr9 102898754 102898886 -21177286 + MIRb SINE MIR 2 135 -133 8 1370 297 169 0 0 chr9 102899292 102899351 -21176821 + CT-rich Low_complexity Low_complexity 2 60 0 8 1370 900 218 58 0 chr9 102899554 102899728 -21176444 - B4A SINE B4 -3 289 106 8 1370 26 48 0 45 chr9 102899780 102899846 -21176326 + AT_rich Low_complexity Low_complexity 1 63 0 8 1370 249 128 0 0 chr9 102899846 102899893 -21176279 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1370 459 229 105 0 chr9 102899899 102900004 -21176168 - RSINE1 SINE B4 -47 118 3 8 1370 197 245 109 143 chr9 102900254 102900373 -21175799 + MIRb SINE MIR 91 205 -63 8 1370 1391 76 5 0 chr9 102900633 102900817 -21175355 - MT2C_Mm LTR ERVL 0 475 291 8 1370 884 155 6 0 chr9 102900818 102900979 -21175193 + GA-rich Low_complexity Low_complexity 3 164 0 8 1370 232 352 103 36 chr9 102901054 102901219 -21174953 - MLT1K LTR MaLR -419 176 1 8 1370 419 114 31 39 chr9 102902247 102902375 -21173797 + (TCTG)n Simple_repeat Simple_repeat 2 128 0 8 1370 362 262 49 75 chr9 102903330 102903436 -21172736 + B3A SINE B2 22 124 -74 8 1370 369 239 71 0 chr9 102904456 102904569 -21171603 + MIR SINE MIR 20 140 -122 8 1370 207 0 0 0 chr9 102904569 102904592 -21171580 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1370 887 233 5 22 chr9 102904612 102904796 -21171376 - B3A SINE B2 -16 182 2 8 1370 2687 225 174 19 chr9 102904921 102905726 -21170446 + Lx8 LINE L1 6279 7208 -265 8 1370 289 369 8 51 chr9 102905727 102905844 -21170328 + RMER15 LTR ERVL 359 470 -105 8 1370 414 0 0 0 chr9 102905845 102905891 -21170281 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 8 1370 32 26 0 0 chr9 102906584 102906623 -21169549 + AT_rich Low_complexity Low_complexity 1 39 0 8 1370 879 343 45 50 chr9 102906628 102906699 -21169473 - Lx9 LINE L1 -63 7410 7341 8 1370 342 0 0 0 chr9 102906699 102906737 -21169435 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1370 2043 253 15 24 chr9 102906737 102907291 -21168881 - Lx9 LINE L1 -171 7473 6789 8 1370 414 313 103 80 chr9 102908111 102908413 -21167759 + MLT1J LTR MaLR 27 335 -177 8 1370 195 129 0 0 chr9 102908582 102908613 -21167559 + (CCCCCT)n Simple_repeat Simple_repeat 6 36 0 8 1370 321 256 65 22 chr9 102908706 102908798 -21167374 + RMER10A LTR ERVL 321 416 -26 8 1370 862 228 151 4 chr9 102909097 102909335 -21166837 + B4 SINE B4 1 273 -19 8 1370 323 342 55 3 chr9 102909355 102909504 -21166668 + MIRb SINE MIR 13 167 -101 8 1370 486 0 0 0 chr9 102911230 102911284 -21164888 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 1370 315 0 0 0 chr9 102911284 102911318 -21164854 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1370 577 252 65 25 chr9 102913406 102913605 -21162567 + Lx7 LINE L1 7099 7305 -391 8 1370 270 0 0 0 chr9 102913612 102913642 -21162530 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 8 1370 324 0 0 0 chr9 102913707 102913743 -21162429 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 9 1370 666 114 143 0 chr9 102913744 102913849 -21162323 - 5S rRNA rRNA 0 121 2 9 1370 180 0 0 0 chr9 102913856 102913876 -21162296 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 9 1370 246 308 9 0 chr9 102913879 102913986 -21162186 + Lx7 LINE L1 7579 7686 -10 8 1370 592 231 82 0 chr9 102914045 102914179 -21161993 + ID_B1 SINE B4 80 224 0 9 1370 408 179 0 0 chr9 102914179 102914257 -21161915 + GA-rich Low_complexity Low_complexity 1 78 0 9 1370 336 48 0 0 chr9 102914728 102914770 -21161402 + (TTA)n Simple_repeat Simple_repeat 1 42 0 9 1370 495 0 0 0 chr9 102914837 102914892 -21161280 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1370 630 295 62 81 chr9 102914902 102915175 -21160997 - B4 SINE B4 -8 284 17 9 1370 264 260 64 13 chr9 102915193 102915271 -21160901 - ID4_ SINE ID 0 83 2 9 1370 1385 79 17 0 chr9 102915321 102915498 -21160674 - B2_Mm2 SINE B2 -15 180 1 9 1370 912 328 71 58 chr9 102916836 102917360 -21158812 - L1MD2 LINE L1 -228 6131 5602 9 1370 1080 72 114 46 chr9 102917360 102917535 -21158637 - B2_Mm1t SINE B2 -5 188 2 9 1370 912 328 71 58 chr9 102917535 102917757 -21158415 - L1MD2 LINE L1 -758 5601 5375 9 1370 321 262 22 84 chr9 102917772 102917951 -21158221 - L1MD2 LINE L1 -841 5305 5138 9 1370 441 0 0 0 chr9 102917958 102918007 -21158165 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1370 248 224 139 62 chr9 102918037 102918121 -21158051 - B4 SINE B4 -25 267 193 9 1370 207 0 0 0 chr9 102918121 102918144 -21158028 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1370 326 288 62 194 chr9 102918144 102918270 -21157902 - ID_B1 SINE B4 -100 192 81 9 1370 1111 266 97 0 chr9 102918820 102919079 -21157093 + B4A SINE B4 8 291 -1 9 1370 236 239 135 40 chr9 102919047 102919121 -21157051 + B3 SINE B2 130 210 -6 9 1370 202 289 158 49 chr9 102919121 102919285 -21156887 - MIRb SINE MIR -64 204 23 9 1370 2627 130 30 15 chr9 102919877 102920284 -21155888 - MTC LTR MaLR -8 413 1 9 1370 264 347 0 26 chr9 102921331 102921408 -21154764 - MER81 DNA AcHobo -39 75 1 9 1370 520 271 110 51 chr9 102921765 102922002 -21154170 - MTD LTR MaLR -168 251 1 9 1370 204 40 0 0 chr9 102922152 102922177 -21153995 + (TCC)n Simple_repeat Simple_repeat 3 27 0 9 1370 619 266 22 0 chr9 102922177 102922316 -21153856 - B1F SINE Alu -5 144 3 9 1370 3024 197 63 162 chr9 102923170 102924299 -21151873 - RMER1B Other Other 0 1066 50 9 1370 839 178 199 6 chr9 102924819 102925000 -21151172 - B3 SINE B2 0 216 1 9 1370 252 0 0 0 chr9 102926002 102926030 -21150142 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1370 366 224 26 26 chr9 102926056 102926134 -21150038 - B4 SINE B4 -69 223 146 9 1370 2304 77 19 13 chr9 102926128 102926445 -21149727 - ORR1A2 LTR MaLR -8 319 1 9 1370 422 242 222 22 chr9 102926445 102926580 -21149592 - B4 SINE B4 -130 162 1 9 1370 229 339 18 18 chr9 102926922 102927090 -21149082 + L1MEd LINE L1 10 177 -5942 9 1370 520 306 13 125 chr9 102927294 102927541 -21148631 + L1MB3 LINE L1 4961 5204 -936 9 1370 884 149 233 11 chr9 102927541 102927717 -21148455 + B3 SINE B2 2 216 0 9 1370 520 306 13 125 chr9 102927717 102927783 -21148389 + L1MB3 LINE L1 5205 5241 -899 9 1370 1239 48 7 0 chr9 102927783 102927929 -21148243 + B1_Mm SINE Alu 1 147 0 9 1370 189 0 0 0 chr9 102927936 102927957 -21148215 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 9 1370 520 306 13 125 chr9 102927957 102928011 -21148161 + L1MB3 LINE L1 5242 5295 -845 9 1370 372 174 57 23 chr9 102928014 102928102 -21148070 + MTD LTR MaLR 329 419 0 9 1370 1160 281 67 11 chr9 102928112 102928547 -21147625 + L1MB3 LINE L1 5654 6112 -71 9 1370 210 143 0 0 chr9 102929035 102929070 -21147102 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1370 606 167 95 17 chr9 102929159 102929275 -21146897 + ID_B1 SINE B4 100 224 0 9 1370 239 173 19 37 chr9 102929650 102929704 -21146468 - MLT1K LTR MaLR -326 269 217 9 1370 234 261 104 78 chr9 102929900 102930054 -21146118 - MER57C2 LTR ERV1 -33 401 244 9 1370 317 255 96 96 chr9 102930314 102930544 -21145628 - MLT1D LTR MaLR -229 276 47 9 1370 334 297 161 51 chr9 102930583 102930736 -21145436 - MLT2C1 LTR ERVL -54 343 216 9 1370 189 94 0 0 chr9 102930736 102930768 -21145404 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1370 334 301 185 62 chr9 102930768 102930968 -21145204 - MLT2C1 LTR ERVL -182 215 1 9 1370 788 85 0 23 chr9 102931087 102931219 -21144953 + BC1_Mm scRNA scRNA 1 129 -23 9 1370 513 0 0 0 chr9 102931308 102931365 -21144807 + (GA)n Simple_repeat Simple_repeat 1 57 0 9 1370 264 361 10 0 chr9 102931990 102932087 -21144085 + MER5A DNA MER1_type 4 101 -88 9 1370 1050 322 63 26 chr9 102933040 102933387 -21142785 - MTEa LTR MaLR -11 368 9 9 1370 453 36 0 0 chr9 102933390 102933445 -21142727 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1370 459 0 0 0 chr9 102933747 102933798 -21142374 + (T)n Simple_repeat Simple_repeat 1 51 0 9 1370 226 284 209 0 chr9 102933955 102934022 -21142150 + ID4 SINE ID 3 83 0 9 1370 198 0 0 0 chr9 102934551 102934573 -21141599 + (CCCTG)n Simple_repeat Simple_repeat 3 24 0 9 1370 378 0 0 0 chr9 102935609 102935651 -21140521 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1370 380 212 11 23 chr9 102936555 102936642 -21139530 + B4 SINE B4 1 86 -206 9 1370 2461 157 73 12 chr9 102936646 102937071 -21139101 + Lx5 LINE L1 6600 7050 0 9 1370 1155 35 21 7 chr9 102937095 102937239 -21138933 + B1_Mm SINE Alu 2 147 0 9 1370 201 108 0 0 chr9 102937246 102937283 -21138889 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 9 1370 565 270 12 42 chr9 102937302 102937460 -21138712 + B4 SINE B4 80 232 -60 9 1370 506 72 43 0 chr9 102937460 102937529 -21138643 - ORR1B1 LTR MaLR 0 394 323 9 1370 251 280 0 0 chr9 102937534 102937584 -21138588 + B4 SINE B4 243 292 0 9 1370 201 158 0 0 chr9 102937585 102937623 -21138549 + (CAGA)n Simple_repeat Simple_repeat 4 41 0 9 1370 234 0 0 0 chr9 102937742 102937768 -21138404 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1370 279 319 82 19 chr9 102938069 102938277 -21137895 + L1ME3A LINE L1 5945 6165 -8 9 1370 365 232 143 31 chr9 102938781 102938879 -21137293 + PB1D7 SINE Alu 3 111 -9 9 1370 272 200 0 57 chr9 102938834 102938887 -21137285 + ID_B1 SINE B4 174 223 -1 9 1370 492 310 139 15 chr9 102940329 102940588 -21135584 - L1MC4 LINE L1 -4983 1232 942 9 1370 333 0 0 0 chr9 102941006 102941043 -21135129 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1370 578 246 15 15 chr9 102941418 102941550 -21134622 + Tigger5 DNA MER2_type 2137 2268 -138 9 1370 207 0 0 0 chr9 102942392 102942415 -21133757 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1370 558 302 73 60 chr9 102942690 102942908 -21133264 - B4 SINE B4 -70 222 2 9 1370 279 133 0 0 chr9 102943027 102943072 -21133100 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 9 1370 537 49 0 35 chr9 102943625 102943710 -21132462 - L1Md_F2 LINE L1 -1 6581 6500 9 1370 507 56 0 0 chr9 102943934 102944005 -21132167 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 9 1370 227 173 39 0 chr9 102944250 102944302 -21131870 - L1ME2 LINE L1 -2 6162 6109 9 1370 234 0 0 0 chr9 102944881 102944907 -21131265 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1370 882 245 74 35 chr9 102944961 102945219 -21130953 + B4 SINE B4 5 272 -20 9 1370 315 0 0 0 chr9 102945235 102945270 -21130902 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1370 262 182 0 0 chr9 102945671 102945715 -21130457 - MIRb SINE MIR -191 77 34 9 1370 680 311 32 99 chr9 102946672 102946986 -21129186 + MTD LTR MaLR 5 297 -122 9 1370 1394 69 37 5 chr9 102947057 102947246 -21128926 + B2_Mm2 SINE B2 1 195 0 9 1370 1646 47 0 0 chr9 102948121 102948313 -21127859 + B2_Mm1a SINE B2 2 193 0 9 1370 864 256 19 10 chr9 102948578 102948787 -21127385 + ID_B1 SINE B4 12 222 -2 9 1370 904 211 40 15 chr9 102949201 102949227 -21126945 - B3 SINE B2 -8 208 182 9 1370 444 82 0 0 chr9 102949227 102949288 -21126884 + (TA)n Simple_repeat Simple_repeat 2 62 0 9 1370 904 211 40 15 chr9 102949288 102949463 -21126709 - B3 SINE B2 -35 181 2 9 1370 444 19 0 0 chr9 102949922 102949975 -21126197 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1370 312 265 24 0 chr9 102950806 102950889 -21125283 - L2a LINE L2 -9 3417 3333 9 1370 1725 220 88 10 chr9 102951256 102951642 -21124530 - MTD LTR MaLR -1 418 3 9 1370 747 283 78 50 chr9 102951847 102952049 -21124123 + B4 SINE B4 2 213 -79 9 1370 243 0 0 0 chr9 102952049 102952076 -21124096 + (GA)n Simple_repeat Simple_repeat 1 27 0 9 1370 747 283 78 50 chr9 102952076 102952156 -21124016 + B4 SINE B4 214 292 0 9 1370 752 306 86 11 chr9 102953145 102953413 -21122759 - RMER15 LTR ERVL -13 562 275 9 1370 240 235 44 0 chr9 102953839 102953907 -21122265 - L1MA5 LINE L1 -7 6293 6223 9 1370 414 0 0 0 chr9 102953969 102954015 -21122157 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1370 387 291 92 63 chr9 102954125 102954551 -21121621 - L1MEd LINE L1 -820 5326 4889 9 1370 243 0 0 0 chr9 102954774 102954801 -21121371 + (TA)n Simple_repeat Simple_repeat 1 27 0 9 1370 263 221 12 61 chr9 102954801 102954883 -21121289 - L1MC LINE L1 -1499 4647 4570 9 1370 357 348 79 75 chr9 102955554 102956061 -21120111 - L1MEd LINE L1 -4908 1228 720 9 1370 1086 274 51 65 chr9 102956394 102956890 -21119282 - RLTR26 LTR ERVK -84 543 1 9 1370 210 217 0 0 chr9 102960247 102960316 -21115856 + A-rich Low_complexity Low_complexity 1 69 0 9 1370 1585 210 67 31 chr9 102960604 102961022 -21115150 + BGLII_B LTR ERVK 1 433 -8 9 1370 734 120 16 49 chr9 102962498 102962621 -21113551 - B1_Mur3 SINE Alu -1 148 30 9 1370 307 206 40 80 chr9 102962534 102962634 -21113538 - MT2B LTR ERVL -337 264 169 9 1370 231 335 120 47 chr9 102962905 102963096 -21113076 - L3 LINE CR1 -1085 3404 3200 9 1370 367 279 61 23 chr9 102963909 102964041 -21112131 - L1MA5 LINE L1 -13 6287 6151 9 1370 784 173 75 0 chr9 102964595 102964728 -21111444 + B1_Mur2 SINE Alu 6 148 -1 9 1370 998 186 108 0 chr9 102964750 102964944 -21111228 + B3 SINE B2 2 216 0 9 1370 1192 223 18 22 chr9 102965035 102965310 -21110862 - B4A SINE B4 -16 276 3 9 1370 228 196 43 0 chr9 102965892 102965938 -21110234 + (CATG)n Simple_repeat Simple_repeat 1 48 0 1 1370 990 231 56 38 chr9 102965963 102966229 -21109943 - B4 SINE B4 -21 271 1 1 1370 504 0 0 0 chr9 102966617 102966673 -21109499 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1370 342 0 0 0 chr9 102966673 102966710 -21109462 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1370 760 286 126 3 chr9 102967479 102967781 -21108391 - L1MB1 LINE L1 -155 6013 5675 1 1370 1317 96 17 0 chr9 102967782 102967959 -21108213 + B2_Mm2 SINE B2 2 181 -14 1 1370 553 139 180 0 chr9 102968012 102968134 -21108038 + B1_Mus1 SINE Alu 5 148 0 1 1370 317 311 7 15 chr9 102968177 102968314 -21107858 - L1MB1 LINE L1 -598 5573 5438 1 1370 380 272 17 9 chr9 102968778 102968893 -21107279 - PB1D10 SINE Alu -1 116 1 1 1370 616 261 91 0 chr9 102970674 102970754 -21105418 + RMER30 DNA MER1_type 16 105 -97 1 1370 213 39 0 0 chr9 102970754 102970780 -21105392 + (CAA)n Simple_repeat Simple_repeat 1 26 0 1 1370 616 261 91 0 chr9 102970780 102970864 -21105308 + RMER30 DNA MER1_type 106 194 -8 1 1370 1120 89 7 0 chr9 102971927 102972073 -21104099 + B1_Mm SINE Alu 1 147 0 1 1370 730 250 35 121 chr9 102973083 102973234 -21102938 + B4 SINE B4 81 220 -72 1 1370 1304 29 135 0 chr9 102973234 102973404 -21102768 + B2_Mm2 SINE B2 1 193 -2 1 1370 730 211 33 110 chr9 102973404 102973506 -21102666 + B4 SINE B4 221 292 0 1 1370 277 325 100 62 chr9 102974116 102974326 -21101846 + MIRb SINE MIR 42 259 -9 1 1370 313 323 72 36 chr9 102976341 102976380 -21099792 + YREP_Mm Unknown Unknown 131 298 -1509 1 1370 645 236 8 0 chr9 102976380 102976503 -21099669 - ID_B1 SINE B4 -1 223 100 1 1370 599 127 0 71 chr9 102977453 102977580 -21098592 - Lx LINE L1 0 6654 6537 1 1370 3880 80 65 8 chr9 102977580 102978235 -21097937 - L1_Rod LINE L1 -2161 3686 3022 1 1370 1537 67 0 5 chr9 102981363 102981557 -21094615 - B2_Mm2 SINE B2 -1 194 2 1 1370 203 150 50 0 chr9 102982506 102982546 -21093626 + A-rich Low_complexity Low_complexity 3 44 0 1 1370 314 286 191 0 chr9 102982674 102982800 -21093372 + MIRb SINE MIR 81 230 -38 1 1370 546 280 64 0 chr9 102982813 102982938 -21093234 + ID_B1 SINE B4 84 216 -8 1 1370 1304 151 9 22 chr9 102982938 102983162 -21093010 + URR1B DNA MER1_type 5 225 0 1 1370 621 323 12 6 chr9 102983327 102983495 -21092677 - MTEa LTR MaLR -207 172 4 1 1370 295 276 140 20 chr9 102984059 102984159 -21092013 - MER45R DNA Tip100 -1467 114 3 1 1370 184 270 125 16 chr9 102984420 102984484 -21091688 - MER5A DNA MER1_type -113 76 6 1 1370 210 143 29 0 chr9 102988292 102988327 -21087845 + CT-rich Low_complexity Low_complexity 3 38 0 1 1370 300 53 0 0 chr9 102988332 102988370 -21087802 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1370 1104 77 25 25 chr9 102990649 102990809 -21085363 + B2_Mm2 SINE B2 2 161 -34 1 1370 1107 54 6 98 chr9 102990830 102990993 -21085179 + B1_Mus1 SINE Alu 1 148 0 1 1370 903 171 7 0 chr9 102991504 102991650 -21084522 + B1_Mur2 SINE Alu 3 149 0 1 1370 706 207 0 11 chr9 102991650 102991826 -21084346 + GA-rich Low_complexity Low_complexity 4 177 0 1 1370 201 74 0 0 chr9 102992406 102992433 -21083739 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1370 424 340 148 29 chr9 102992848 102993199 -21082973 - MLT1J1 LTR MaLR -50 394 2 1 1370 423 0 0 0 chr9 102994143 102994190 -21081982 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1370 239 0 0 31 chr9 102994422 102994454 -21081718 + (GGGTG)n Simple_repeat Simple_repeat 4 34 0 1 1370 199 333 65 0 chr9 102995326 102995419 -21080753 + L2 LINE L2 2455 2553 -866 1 1370 289 323 47 30 chr9 102995691 102995927 -21080245 - L1MEb LINE L1 -575 6729 6490 1 1370 616 247 117 48 chr9 102996140 102996370 -21079802 + ORR1D2 LTR MaLR 29 274 -96 1 1370 304 319 95 27 chr9 102996492 102996929 -21079243 - L1MEb LINE L1 -5176 1820 1331 1 1370 351 0 0 0 chr9 102997055 102997094 -21079078 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1370 1043 149 155 30 chr9 102997121 102997321 -21078851 + URR1B DNA MER1_type 1 225 0 1 1370 1275 173 115 34 chr9 102998333 102998674 -21077498 - MTC LTR MaLR -3 418 59 1 1370 333 167 152 0 chr9 102999934 103000000 -21076172 + MTE2b LTR MaLR 1 76 -303 1 1370 343 281 95 17 chr9 103000037 103000153 -21076019 + MTE2a LTR MaLR 91 215 -164 1 1370 4182 49 2 2 chr9 103000403 103000934 -21075238 + L1Md_F2 LINE L1 6051 6581 -1 2 1370 230 116 23 0 chr9 103001188 103001231 -21074941 + (TGG)n Simple_repeat Simple_repeat 1 44 0 3 1370 259 234 31 15 chr9 103001242 103001307 -21074865 - ID4_ SINE ID -16 67 2 4 1370 3821 131 71 30 chr9 103001495 103002187 -21073985 - RMER6D LTR ERVK 0 720 1 5 1370 236 204 0 0 chr9 103002194 103002243 -21073929 + (CAA)n Simple_repeat Simple_repeat 2 50 0 6 1370 1724 202 75 75 chr9 103002324 103002794 -21073378 + RMER19C LTR ERVK 142 611 0 7 1370 467 304 57 34 chr9 103002847 103003024 -21073148 + MTEa LTR MaLR 3 183 -196 8 1370 609 225 0 0 chr9 103003024 103003175 -21072997 + GA-rich Low_complexity Low_complexity 2 152 0 9 1370 620 293 4 92 chr9 103003175 103003404 -21072768 + MTEa LTR MaLR 171 379 0 8 1370 1043 269 73 14 chr9 103003404 103003824 -21072348 - Charlie5 DNA MER1_type -483 2141 1697 1 1370 714 285 71 43 chr9 103003816 103004184 -21071988 - Charlie5 DNA MER1_type -1223 1401 1018 1 1370 1150 56 0 0 chr9 103004184 103004326 -21071846 + B1_Mus1 SINE Alu 2 143 -5 1 1370 714 285 71 43 chr9 103004326 103004349 -21071823 - Charlie5 DNA MER1_type -1607 1017 999 1 1370 21 0 0 0 chr9 103004372 103004393 -21071779 + AT_rich Low_complexity Low_complexity 1 21 0 1 1370 758 123 16 16 chr9 103004510 103004634 -21071538 - B1_Mur4 SINE Alu -2 148 25 1 1370 431 18 18 0 chr9 103004732 103004788 -21071384 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1370 1150 224 35 4 chr9 103004794 103005050 -21071122 - B4A SINE B4 -22 270 7 1 1370 506 251 109 26 chr9 103005218 103005410 -21070762 - B4A SINE B4 -2 290 83 1 1370 420 130 0 0 chr9 103005411 103005480 -21070692 + (T)n Simple_repeat Simple_repeat 1 69 0 1 1370 940 95 0 87 chr9 103005480 103005641 -21070531 - B1_Mus1 SINE Alu 0 148 2 1 1370 523 239 92 156 chr9 103005641 103005721 -21070451 - B4 SINE B4 -227 65 1 1 1370 507 293 113 87 chr9 103005750 103006060 -21070112 - Charlie5 DNA MER1_type -2193 431 114 1 1370 561 345 102 36 chr9 103006129 103006184 -21069988 + L1ME1 LINE L1 5611 5665 -2120 2 1370 471 35 0 0 chr9 103006184 103006241 -21069931 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 2 1370 606 319 62 31 chr9 103006241 103006762 -21069410 + L1ME1 LINE L1 5666 6224 -1561 2 1370 351 202 0 119 chr9 103006779 103006850 -21069322 - MTE2a LTR MaLR -2 377 313 2 1370 1358 205 62 112 chr9 103006850 103007289 -21068883 + MTD LTR MaLR 1 417 -2 2 1370 351 202 0 119 chr9 103007289 103007318 -21068854 - MTE2a LTR MaLR -67 312 289 2 1370 230 73 24 0 chr9 103007336 103007377 -21068795 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 2 1370 2568 278 122 28 chr9 103007377 103008078 -21068094 + MTE-int LTR MaLR 632 1410 -170 2 1370 1094 97 97 0 chr9 103008078 103008254 -21067918 - B2_Mm1a SINE B2 0 193 1 2 1370 2568 278 122 28 chr9 103008254 103008366 -21067806 + MTE-int LTR MaLR 1411 1528 -52 2 1370 1120 215 66 58 chr9 103008366 103008731 -21067441 - ORR1D2 LTR MaLR -2 368 1 2 1370 2568 278 122 28 chr9 103008731 103008760 -21067412 + MTE-int LTR MaLR 1529 1553 -27 2 1370 530 255 101 38 chr9 103008760 103008919 -21067253 + Lx8 LINE L1 6956 7124 -349 2 1370 479 325 51 31 chr9 103008916 103009307 -21066865 + L1MD LINE L1 3166 3564 -2582 2 1370 710 190 73 0 chr9 103009331 103009468 -21066704 + B1_Mus2 SINE Alu 1 147 0 3 1370 665 225 76 12 chr9 103009508 103009679 -21066493 - B3A SINE B2 -15 183 2 3 1370 350 295 49 0 chr9 103009687 103009809 -21066363 + L1M5 LINE L1 3555 3682 -2464 3 1370 3184 70 5 5 chr9 103009833 103010277 -21065895 - L1_Mus3 LINE L1 -1 6637 6194 3 1370 297 279 62 41 chr9 103010285 103010431 -21065741 + L1M5 LINE L1 3676 3824 -2322 3 1370 243 313 142 94 chr9 103010413 103010900 -21065272 + L1MD1 LINE L1 5720 6229 -13 3 1370 2263 106 111 60 chr9 103010931 103011154 -21065018 + IAPLTR2_Mm LTR ERVK 1 220 -255 3 1370 540 0 0 0 chr9 103011154 103011214 -21064958 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1370 2263 106 111 60 chr9 103011214 103011442 -21064730 + IAPLTR2_Mm LTR ERVK 221 475 0 3 1370 555 189 31 8 chr9 103011689 103011817 -21064355 + L1MC4a LINE L1 7734 7864 -18 3 1370 511 292 0 137 chr9 103012539 103012765 -21063407 + RMER30 DNA MER1_type 7 201 -1 3 1370 261 0 0 0 chr9 103013130 103013159 -21063013 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1370 206 222 60 10 chr9 103014165 103014265 -21061907 + (CCGCG)n Simple_repeat Simple_repeat 2 106 0 4 1370 274 147 29 0 chr9 103014395 103014463 -21061709 + CT-rich Low_complexity Low_complexity 2 71 0 4 1370 21 0 0 0 chr9 103015724 103015745 -21060427 + GC_rich Low_complexity Low_complexity 1 21 0 4 1370 288 0 0 0 chr9 103016390 103016422 -21059750 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1370 968 181 39 0 chr9 103017859 103018041 -21058131 - URR1A DNA MER1_type -1 225 37 4 1370 254 228 103 66 chr9 103019039 103019175 -21056997 - MLT1A1 LTR MaLR 0 408 268 4 1370 370 221 52 10 chr9 103019363 103019459 -21056713 - ID_B1 SINE B4 -17 207 108 4 1370 238 222 0 22 chr9 103019447 103019493 -21056679 - ID4_ SINE ID -10 73 29 4 1370 288 0 0 0 chr9 103019924 103019956 -21056216 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 4 1370 985 219 0 53 chr9 103020755 103020982 -21055190 + B4 SINE B4 1 215 -77 4 1371 24 0 0 0 chr9 103025132 103025156 -21051016 + AT_rich Low_complexity Low_complexity 1 24 0 5 1371 985 225 48 8 chr9 103025241 103025492 -21050680 - B4A SINE B4 -30 262 2 5 1371 567 329 100 32 chr9 103025527 103025838 -21050334 + MLT1E1 LTR MaLR 323 654 0 5 1371 3350 30 0 0 chr9 103025992 103026390 -21049782 - MTB LTR MaLR 0 400 3 5 1371 1071 62 7 20 chr9 103026654 103026803 -21049369 - B1_Mus1 SINE Alu 0 148 2 5 1371 1586 31 0 0 chr9 103027398 103027590 -21048582 - B2_Mm1a SINE B2 0 193 2 5 1371 352 280 135 8 chr9 103028917 103029043 -21047129 + B3A SINE B2 7 148 -50 5 1371 315 297 0 0 chr9 103029278 103029385 -21046787 - L1MC4a LINE L1 -8 7874 7795 5 1371 419 346 7 0 chr9 103029408 103029544 -21046628 - MIRb SINE MIR -96 172 36 5 1371 261 259 99 41 chr9 103029606 103029727 -21046445 - L1MEf LINE L1 -4642 1558 1431 5 1371 269 173 0 55 chr9 103030362 103030417 -21045755 - B1_Mur4 SINE Alu -85 65 14 6 1371 574 289 96 7 chr9 103030608 103030820 -21045352 - L1MEc LINE L1 -4447 1953 1717 6 1371 725 61 10 0 chr9 103030820 103030919 -21045253 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 6 1371 574 299 71 18 chr9 103030919 103031013 -21045159 - L1MEc LINE L1 -4663 1752 1647 6 1371 2065 96 53 0 chr9 103031290 103031593 -21044579 - ORR1A2 LTR MaLR -8 319 1 6 1371 581 72 12 0 chr9 103031658 103031741 -21044431 + (TCCCC)n Simple_repeat Simple_repeat 1 84 0 6 1371 254 253 224 27 chr9 103031842 103032025 -21044147 - L1MEc LINE L1 -5221 1179 961 6 1371 677 257 61 14 chr9 103032041 103032254 -21043918 - LTRIS4 LTR ERV1 0 507 285 6 1371 1125 114 6 22 chr9 103032592 103032772 -21043400 - B2_Mm1a SINE B2 -14 179 3 6 1371 831 201 112 16 chr9 103032847 103033034 -21043138 - B3 SINE B2 -5 211 7 6 1371 522 214 37 102 chr9 103033095 103033119 -21043053 - B4A SINE B4 -44 248 227 6 1371 596 50 0 12 chr9 103033119 103033200 -21042972 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 6 1371 1076 68 0 0 chr9 103033202 103033349 -21042823 - B1_Mm SINE Alu 0 147 1 7 1371 605 198 38 77 chr9 103033349 103033366 -21042806 - B4 SINE B4 -66 224 69 6 1371 240 241 45 11 chr9 103034560 103034648 -21041524 - L1MA9 LINE L1 -279 6033 5943 7 1371 234 263 18 0 chr9 103034730 103034787 -21041385 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1371 724 229 29 54 chr9 103035426 103035632 -21040540 - B3A SINE B2 -4 191 1 7 1371 885 25 136 0 chr9 103038000 103038118 -21038054 + B1_Mus2 SINE Alu 2 135 -12 7 1371 660 167 0 0 chr9 103038810 103038930 -21037242 + CT-rich Low_complexity Low_complexity 2 121 0 7 1371 576 134 230 25 chr9 103039107 103039268 -21036904 - Lx5 LINE L1 0 7050 6857 7 1371 1449 127 44 51 chr9 103039267 103039291 -21036881 + Lx5 LINE L1 5773 5796 -1254 7 1371 1377 77 0 25 chr9 103039291 103039490 -21036682 + B2_Mm2 SINE B2 1 194 -1 7 1371 1449 127 44 51 chr9 103039490 103039739 -21036433 + Lx5 LINE L1 5797 6044 -1006 7 1371 630 219 68 73 chr9 103040682 103040874 -21035298 + B4A SINE B4 1 191 -101 7 1371 346 261 190 6 chr9 103040995 103041153 -21035019 - MER21B LTR ERV1 -579 284 98 8 1371 194 259 38 0 chr9 103041494 103041572 -21034600 - MIRb SINE MIR -144 124 38 8 1371 3885 91 23 26 chr9 103044212 103044819 -21031353 + RLTR1D LTR ERV1 1 605 0 8 1371 277 347 0 0 chr9 103044908 103045003 -21031169 - ID_B1 SINE B4 0 224 130 8 1371 699 187 0 0 chr9 103045727 103045893 -21030279 + (CA)n Simple_repeat Simple_repeat 1 166 0 8 1371 723 189 0 0 chr9 103045904 103046159 -21030013 + (CA)n Simple_repeat Simple_repeat 1 255 0 8 1371 321 26 0 0 chr9 103046776 103046814 -21029358 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1371 1013 238 88 23 chr9 103046982 103047334 -21028838 - RMER17C LTR ERVK -34 376 2 8 1371 246 274 0 52 chr9 103047895 103047972 -21028200 - MLT1A0 LTR MaLR -17 348 276 8 1371 325 276 0 13 chr9 103048423 103048581 -21027591 + (CA)n Simple_repeat Simple_repeat 2 157 0 8 1371 183 42 0 0 chr9 103050183 103050207 -21025965 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 8 1371 191 312 130 23 chr9 103050421 103050552 -21025620 - MIRc SINE MIR -2 266 122 9 1371 359 244 59 59 chr9 103050617 103050752 -21025420 + ID_B1 SINE B4 90 224 0 9 1371 396 0 0 0 chr9 103050998 103051042 -21025130 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1371 638 239 156 60 chr9 103051517 103051819 -21024353 + ORR1E LTR MaLR 21 351 -8 9 1371 334 318 76 19 chr9 103052312 103052469 -21023703 - ORR1D2 LTR MaLR 0 370 205 9 1371 186 43 0 0 chr9 103052667 103052690 -21023482 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 9 1371 180 0 0 0 chr9 103052727 103052747 -21023425 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 1371 746 283 28 99 chr9 103052748 103053101 -21023071 + ORR1E LTR MaLR 24 351 -8 9 1371 937 70 78 0 chr9 103053137 103053265 -21022907 + B1_Mus1 SINE Alu 3 140 -8 9 1371 185 329 14 14 chr9 103053407 103053481 -21022691 + MIR SINE MIR 71 144 -64 9 1371 230 250 15 0 chr9 103054115 103054183 -21021989 - L1MEa LINE L1 -4871 1329 1261 1 1371 1351 65 5 26 chr9 103054199 103054388 -21021784 + B2_Mm1a SINE B2 2 186 -7 1 1371 249 83 0 0 chr9 103054504 103054540 -21021632 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1371 644 220 15 8 chr9 103054555 103054688 -21021484 - RSINE1 SINE B4 -25 140 7 1 1371 382 331 80 16 chr9 103054691 103054878 -21021294 - L1MEa LINE L1 -5255 839 641 1 1371 435 19 0 0 chr9 103054889 103054941 -21021231 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1371 227 349 121 0 chr9 103055517 103055649 -21020523 + L2c LINE L2 3216 3363 -24 1 1371 209 320 0 26 chr9 103056092 103056169 -21020003 + MIRb SINE MIR 27 101 -167 1 1371 696 253 45 19 chr9 103056682 103056839 -21019333 + RSINE1 SINE B4 3 163 -2 1 1371 1957 91 104 0 chr9 103056868 103057155 -21019017 - ORR1A2 LTR MaLR 0 327 11 1 1371 369 0 0 0 chr9 103057310 103057351 -21018821 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1371 200 93 70 0 chr9 103057352 103057395 -21018777 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1371 900 251 19 33 chr9 103057420 103057525 -21018647 - B3 SINE B2 0 216 108 1 1371 6089 85 7 84 chr9 103057525 103057943 -21018229 - RLTR13B1 LTR ERVK 0 893 476 1 1371 756 22 0 0 chr9 103057943 103058033 -21018139 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1371 6089 85 7 84 chr9 103058033 103058581 -21017591 - RLTR13B1 LTR ERVK -418 475 1 1 1371 900 251 19 33 chr9 103058581 103058689 -21017483 - B3 SINE B2 -109 107 6 1 1371 199 0 31 31 chr9 103059459 103059491 -21016681 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1371 678 267 80 97 chr9 103059497 103059796 -21016376 - ORR1E LTR MaLR -65 294 1 1 1371 599 264 360 25 chr9 103059796 103060064 -21016108 - ORR1E-int LTR MaLR -53 1527 1166 1 1371 1387 331 135 68 chr9 103060040 103060916 -21015256 - ORR1E-int LTR MaLR -630 950 17 1 1371 528 298 95 34 chr9 103060930 103061241 -21014931 - ORR1E LTR MaLR -11 368 8 1 1371 1007 185 140 34 chr9 103062223 103062458 -21013714 - MTD LTR MaLR -123 296 37 1 1371 1207 177 9 48 chr9 103063927 103064158 -21012014 + URR1A DNA MER1_type 5 226 0 1 1371 333 157 0 0 chr9 103064166 103064217 -21011955 + URR1A DNA MER1_type 175 225 -1 1 1371 572 267 111 28 chr9 103065690 103065871 -21010301 + ID_B1 SINE B4 7 202 -22 1 1371 556 310 140 34 chr9 103066831 103067188 -21008984 + Charlie4a DNA MER1_type 114 508 0 1 1371 611 298 115 0 chr9 103067806 103068024 -21008148 - MLT1A0 LTR MaLR -11 354 112 1 1371 721 134 202 0 chr9 103068125 103068244 -21007928 - B1_Mur4 SINE Alu -6 144 2 1 1371 225 265 0 0 chr9 103068246 103068295 -21007877 - MLT1A0 LTR MaLR -318 56 8 1 1371 204 200 0 0 chr9 103068507 103068547 -21007625 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1371 211 274 0 0 chr9 103068890 103068941 -21007231 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1371 977 258 104 4 chr9 103068952 103069201 -21006971 - B4 SINE B4 -18 274 1 1 1371 470 202 139 9 chr9 103071101 103071216 -21004956 - RMER10B LTR ERVL 0 398 269 1 1371 289 286 91 80 chr9 103074494 103074768 -21001404 - MER52-int LTR ERV1 -1953 5138 4862 1 1371 1484 79 16 0 chr9 103075151 103075340 -21000832 + B2_Mm2 SINE B2 1 192 -3 1 1371 283 289 66 11 chr9 103075862 103075953 -21000219 + B4A SINE B4 48 143 -149 1 1371 348 104 0 0 chr9 103075898 103075946 -21000226 + B1_Mus1 SINE Alu 1 48 -100 1 1371 257 137 49 110 chr9 103075946 103075978 -21000194 + MT2B LTR ERVL 258 332 -269 1 1371 203 309 0 14 chr9 103077678 103077747 -20998425 + GA-rich Low_complexity Low_complexity 1 68 0 1 1371 348 252 107 75 chr9 103078717 103078876 -20997296 - RMER10B LTR ERVL 0 398 235 1 1371 463 270 52 33 chr9 103079410 103079621 -20996551 - RMER17C-int LTR ERVK 0 3238 3024 1 1371 665 178 80 116 chr9 103079742 103080053 -20996119 - RMER17C-int LTR ERVK -388 2850 2607 1 1371 523 226 26 0 chr9 103080100 103080215 -20995957 + LSU-rRNA_Hsa rRNA rRNA 4203 4320 -715 1 1371 621 219 15 87 chr9 103080216 103080411 -20995761 - RMER17C-int LTR ERVK -2428 3709 3529 1 1371 1589 214 28 81 chr9 103080850 103081393 -20994779 - MYSERV6-int LTR ERVK -293 8666 8153 1 1371 475 292 151 29 chr9 103081401 103081680 -20994492 - RodERV21-int LTR ERV1 -4225 766 454 1 1371 248 302 16 0 chr9 103081706 103081769 -20994403 + tRNA-Ala-GCA tRNA tRNA 1 64 -11 1 1371 26 0 0 0 chr9 103083830 103083856 -20992316 + AT_rich Low_complexity Low_complexity 1 26 0 1 1371 225 257 26 122 chr9 103084213 103084328 -20991844 - MamGypLTR2 LTR Gypsy -900 289 186 1 1371 252 0 0 0 chr9 103087180 103087208 -20988964 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1371 3511 23 8 0 chr9 103087858 103088251 -20987921 - MTA_Mm LTR MaLR 0 396 1 1 1371 504 0 0 0 chr9 103089024 103089080 -20987092 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1371 1728 187 50 30 chr9 103089293 103089657 -20986515 - RLTR20B2 LTR ERVK -1 559 189 1 1371 21 36 0 0 chr9 103089908 103089936 -20986236 + AT_rich Low_complexity Low_complexity 1 28 0 1 1371 633 180 133 4 chr9 103090279 103090446 -20985726 - RLTR20B3 LTR ERVK -12 565 351 1 1371 188 211 69 17 chr9 103090659 103090717 -20985455 - L2a LINE L2 -95 3331 3271 1 1371 677 205 105 7 chr9 103093848 103094000 -20982172 + B3 SINE B2 2 168 -48 1 1371 21 0 0 0 chr9 103094010 103094031 -20982141 + GC_rich Low_complexity Low_complexity 1 21 0 1 1371 1143 81 121 0 chr9 103095418 103095591 -20980581 + B2_Mm2 SINE B2 1 194 -1 1 1371 265 167 0 0 chr9 103095837 103095879 -20980293 + ID SINE ID 2 43 -181 1 1371 345 125 0 0 chr9 103095881 103095937 -20980235 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 1 1371 684 225 92 0 chr9 103095950 103096092 -20980080 + ID_B1 SINE B4 67 221 -3 1 1371 811 195 33 9 chr9 103097153 103097345 -20978827 + B3A SINE B2 15 216 0 1 1371 180 0 0 0 chr9 103097430 103097450 -20978722 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1371 1211 54 0 26 chr9 103097450 103097601 -20978571 - B1_Mus2 SINE Alu 0 147 1 1 1371 773 167 0 48 chr9 103098314 103098459 -20977713 + B1_Mus2 SINE Alu 1 138 -9 1 1371 378 0 0 0 chr9 103098845 103098887 -20977285 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 1371 228 257 204 19 chr9 103098910 103099013 -20977159 - YREP_Mm Unknown Unknown -1487 325 204 1 1371 430 250 193 18 chr9 103098927 103099041 -20977131 + ID_B1 SINE B4 91 224 0 1 1371 258 266 0 102 chr9 103099086 103099174 -20976998 + PB1D10 SINE Alu 39 117 0 1 1371 1239 22 0 0 chr9 103099179 103099317 -20976855 + B1_Mm SINE Alu 1 138 -9 1 1371 696 229 81 46 chr9 103099469 103099643 -20976529 + B3A SINE B2 3 182 -16 1 1371 971 49 0 16 chr9 103100178 103100303 -20975869 + B1_Mus2 SINE Alu 24 146 -1 1 1371 35 0 0 0 chr9 103100304 103100339 -20975833 + AT_rich Low_complexity Low_complexity 1 35 0 1 1371 1036 240 191 12 chr9 103100746 103101083 -20975089 + MTD LTR MaLR 18 380 -39 1 1371 1273 41 0 0 chr9 103101380 103101527 -20974645 + B1_Mus1 SINE Alu 1 147 -1 1 1371 397 337 27 77 chr9 103101682 103101865 -20974307 + B4A SINE B4 2 175 -117 1 1371 213 121 0 0 chr9 103101985 103102018 -20974154 + (CTA)n Simple_repeat Simple_repeat 1 33 0 1 1371 1189 62 0 7 chr9 103102311 103102458 -20973714 + B1_Mus1 SINE Alu 3 148 0 1 1371 232 226 95 16 chr9 103102541 103102604 -20973568 - B4A SINE B4 -9 283 216 1 1371 898 174 0 20 chr9 103102625 103102777 -20973395 - B1_Mur4 SINE Alu 0 150 2 1 1371 577 294 68 32 chr9 103102780 103103001 -20973171 - B4A SINE B4 -63 229 1 1 1371 321 26 0 0 chr9 103103024 103103062 -20973110 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1371 1478 63 11 0 chr9 103103103 103103294 -20972878 + B2_Mm1t SINE B2 1 193 0 1 1371 508 262 75 27 chr9 103103305 103103493 -20972679 + B3A SINE B2 2 198 0 1 1371 252 286 0 0 chr9 103104620 103104697 -20971475 - Lx8 LINE L1 0 7473 7397 1 1371 331 338 103 60 chr9 103105132 103105365 -20970807 - MER102b DNA MER1_type -98 243 1 1 1371 1466 45 0 17 chr9 103106017 103106196 -20969976 + B2_Mm2 SINE B2 1 176 -19 1 1371 1714 181 38 111 chr9 103106286 103106367 -20969805 - ORR1D1 LTR MaLR -5 369 320 1 1371 1225 48 14 0 chr9 103106367 103106513 -20969659 - B1_Mur4 SINE Alu -1 149 2 1 1371 1714 181 38 111 chr9 103106513 103106829 -20969343 - ORR1D1 LTR MaLR -55 319 1 1 1371 3336 48 17 0 chr9 103106888 103107301 -20968871 - BGLII LTR ERVK 0 421 2 1 1371 657 290 68 14 chr9 103107397 103107691 -20968481 + L1M2 LINE L1 5295 5604 -696 1 1371 636 216 22 7 chr9 103107691 103107826 -20968346 + ID_B1 SINE B4 80 216 -8 1 1371 354 261 11 33 chr9 103107847 103107938 -20968234 - B3 SINE B2 -41 175 87 1 1371 25 51 0 0 chr9 103108099 103108138 -20968034 + AT_rich Low_complexity Low_complexity 1 39 0 1 1371 557 303 47 44 chr9 103108138 103108343 -20967829 - B3A SINE B2 -5 211 9 1 1371 1173 74 0 0 chr9 103108396 103108544 -20967628 + B1_Mus1 SINE Alu 1 148 0 1 1371 21 0 0 0 chr9 103108814 103108835 -20967337 + AT_rich Low_complexity Low_complexity 1 21 0 1 1371 332 226 73 31 chr9 103109194 103109290 -20966882 + RLTR23 LTR ERV1 331 430 0 1 1371 1101 57 50 0 chr9 103109531 103109671 -20966501 + B1_Mus2 SINE Alu 1 147 0 1 1371 970 102 5 38 chr9 103109697 103109881 -20966291 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 1371 217 68 0 43 chr9 103110684 103110730 -20965442 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1371 1118 50 43 0 chr9 103110733 103110873 -20965299 - B1_Mus2 SINE Alu -1 146 1 1 1371 1070 170 55 0 chr9 103110892 103111092 -20965080 - B3 SINE B2 -5 211 1 1 1371 198 224 0 0 chr9 103111946 103111995 -20964177 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 1 1371 323 274 0 14 chr9 103112006 103112085 -20964087 - RSINE1 SINE B4 -213 79 2 1 1371 261 0 0 0 chr9 103113408 103113437 -20962735 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1371 368 355 16 0 chr9 103113904 103114028 -20962144 - MIR SINE MIR -111 151 26 1 1371 1138 55 0 20 chr9 103114568 103114717 -20961455 + B1_Mus1 SINE Alu 1 146 -2 1 1371 246 160 0 0 chr9 103114733 103114783 -20961389 + A-rich Low_complexity Low_complexity 1 50 0 1 1371 216 0 0 0 chr9 103114871 103114895 -20961277 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 1371 189 0 0 0 chr9 103114896 103114917 -20961255 + (CAAG)n Simple_repeat Simple_repeat 1 21 0 2 1371 658 252 14 0 chr9 103114917 103115056 -20961116 + B1_Mur1 SINE Alu 4 144 -5 2 1371 459 231 21 3 chr9 103116407 103116699 -20959473 + GA-rich Low_complexity Low_complexity 1 297 0 2 1371 188 258 38 123 chr9 103116714 103116820 -20959352 - L2c LINE L2 -5 3382 3286 2 1371 302 299 182 4 chr9 103117083 103117335 -20958837 - L1MC4 LINE L1 -903 7139 6843 2 1371 897 281 20 61 chr9 103117872 103118118 -20958054 - B4A SINE B4 0 292 57 2 1371 351 0 0 0 chr9 103118303 103118342 -20957830 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1371 304 241 23 57 chr9 103119120 103119208 -20956964 + MLT1J LTR MaLR 3 87 -425 2 1371 235 282 50 25 chr9 103119430 103119510 -20956662 + MLT1J LTR MaLR 382 463 -49 2 1371 1011 274 82 12 chr9 103120118 103120373 -20955799 + B4 SINE B4 2 274 -18 2 1371 279 0 0 0 chr9 103121382 103121413 -20954759 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1371 318 297 8 99 chr9 103122579 103122710 -20953462 - MER21B LTR ERV1 -400 463 345 2 1371 270 237 0 0 chr9 103123612 103123688 -20952484 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1371 229 26 26 26 chr9 103124573 103124612 -20951560 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1371 309 118 0 0 chr9 103124964 103125015 -20951157 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1371 367 254 94 101 chr9 103126291 103126352 -20949820 + Lx7 LINE L1 7151 7210 -486 2 1371 198 0 0 0 chr9 103126352 103126374 -20949798 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1371 1084 74 7 0 chr9 103126374 103126509 -20949663 - B1_Mus1 SINE Alu -11 137 2 2 1371 367 254 94 101 chr9 103126509 103126522 -20949650 + Lx7 LINE L1 7211 7220 -476 2 1371 221 0 0 33 chr9 103126522 103126552 -20949620 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1371 367 254 94 101 chr9 103126552 103126624 -20949548 + Lx7 LINE L1 7221 7297 -399 2 1371 27 62 0 0 chr9 103126973 103127021 -20949151 + AT_rich Low_complexity Low_complexity 1 48 0 2 1371 1192 54 0 7 chr9 103127761 103127910 -20948262 - B1_Mus1 SINE Alu 0 148 1 2 1371 280 367 25 39 chr9 103129497 103129701 -20946471 + MER76 LTR ERVL 43 243 -448 2 1371 1154 97 26 27 chr9 103129779 103129968 -20946204 - B2_Mm1t SINE B2 0 193 18 2 1371 831 272 0 95 chr9 103131165 103131470 -20944702 - B4A SINE B4 -13 279 4 2 1371 180 300 37 12 chr9 103132136 103132217 -20943955 - MIRm SINE MIR -175 101 19 2 1371 336 24 0 0 chr9 103132796 103132837 -20943335 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1371 2568 79 60 81 chr9 103133324 103133792 -20942380 - Lx2 LINE L1 0 6997 6540 2 1371 497 289 50 43 chr9 103134757 103134898 -20941274 - RSINE1 SINE B4 -13 152 11 2 1371 203 310 0 0 chr9 103136756 103136814 -20939358 + GA-rich Low_complexity Low_complexity 2 59 0 2 1371 809 308 76 69 chr9 103137450 103137652 -20938520 + L1M5 LINE L1 3543 3746 -2400 2 1371 1032 68 53 0 chr9 103137652 103137785 -20938387 + B1_Mus1 SINE Alu 1 140 -8 2 1371 180 0 0 0 chr9 103137785 103137805 -20938367 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1371 809 308 76 69 chr9 103137805 103137817 -20938355 + L1M5 LINE L1 3747 3750 -2396 2 1371 523 256 209 11 chr9 103137817 103137999 -20938173 + ID_B1 SINE B4 2 219 -5 2 1371 809 308 76 69 chr9 103137999 103138480 -20937692 + L1M5 LINE L1 3751 4244 -1902 2 1371 2492 259 35 167 chr9 103138816 103139484 -20936688 + Lx8 LINE L1 6102 6776 -693 2 1371 554 271 36 0 chr9 103139484 103139624 -20936548 + RSINE1 SINE B4 4 148 -17 2 1371 504 0 0 0 chr9 103139628 103139684 -20936488 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1371 318 50 0 0 chr9 103139684 103139724 -20936448 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 2 1371 2492 259 35 167 chr9 103139724 103140068 -20936104 + Lx8 LINE L1 6781 7105 -368 2 1371 282 226 40 172 chr9 103140096 103140294 -20935878 + Lx8 LINE L1 7300 7471 -2 2 1371 1874 144 109 14 chr9 103140641 103141007 -20935165 - Lx9 LINE L1 -4 7640 7240 2 1371 285 271 52 15 chr9 103141166 103141301 -20934871 - L1MC4 LINE L1 -54 7907 7768 2 1371 496 319 44 6 chr9 103141453 103141611 -20934561 - RSINE1 SINE B4 0 165 2 2 1371 927 274 77 29 chr9 103142020 103142453 -20933719 - L1MC4 LINE L1 -614 7428 6924 2 1371 361 295 0 0 chr9 103142544 103142622 -20933550 - RSINE1 SINE B4 -85 80 3 2 1371 250 271 103 109 chr9 103142693 103142867 -20933305 - L1MC4 LINE L1 -1029 6853 6681 2 1371 254 270 145 43 chr9 103142871 103143057 -20933115 + RLTR21 LTR ERVK 1211 1415 -157 2 1371 393 164 0 0 chr9 103143265 103143338 -20932834 + G-rich Low_complexity Low_complexity 3 75 0 2 1371 182 118 0 29 chr9 103143385 103143420 -20932752 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 2 1371 1424 204 14 17 chr9 103144451 103144740 -20931432 + B4A SINE B4 3 290 -2 2 1371 261 83 0 0 chr9 103144745 103144781 -20931391 + (CATA)n Simple_repeat Simple_repeat 3 38 0 2 1371 572 272 0 0 chr9 103144789 103144903 -20931269 + ID_B1 SINE B4 96 209 -15 2 1371 420 55 0 0 chr9 103144903 103144958 -20931214 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1371 426 177 165 0 chr9 103144987 103145066 -20931106 - B3A SINE B2 -106 92 1 2 1371 537 239 0 25 chr9 103145336 103145456 -20930716 - B1_Mur1 SINE Alu 0 149 33 2 1371 480 121 0 0 chr9 103146591 103146682 -20929490 + (TG)n Simple_repeat Simple_repeat 1 91 0 2 1371 1220 54 0 0 chr9 103146841 103146988 -20929184 + B1_Mus2 SINE Alu 1 147 0 2 1371 198 0 0 0 chr9 103146988 103147010 -20929162 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1371 1388 158 14 0 chr9 103147296 103147517 -20928655 - MTD LTR MaLR 0 419 196 2 1371 345 261 143 12 chr9 103147517 103147678 -20928494 - L1MEg LINE L1 -4132 2110 1963 2 1371 666 280 17 80 chr9 103147679 103147704 -20928468 - MTD LTR MaLR -185 222 196 2 1371 1210 61 0 0 chr9 103147704 103147851 -20928321 - B1_Mus2 SINE Alu 0 147 1 2 1371 1214 177 5 9 chr9 103147851 103148062 -20928110 - MTD LTR MaLR -209 210 1 2 1371 1118 213 0 15 chr9 103148449 103148654 -20927518 + B3 SINE B2 1 202 -14 2 1371 1413 94 5 0 chr9 103148664 103148855 -20927317 - B2_Mm1t SINE B2 0 193 2 2 1371 475 290 28 6 chr9 103149007 103149184 -20926988 - B3A SINE B2 -16 182 2 2 1371 22 0 0 0 chr9 103149378 103149400 -20926772 + AT_rich Low_complexity Low_complexity 1 22 0 2 1371 2081 245 106 50 chr9 103149408 103150194 -20925978 - Lx9 LINE L1 -2 7642 6813 2 1371 350 240 218 7 chr9 103150222 103150369 -20925803 + B3A SINE B2 4 181 -17 2 1371 792 250 17 6 chr9 103150746 103150923 -20925249 - B3A SINE B2 -18 180 2 2 1371 328 286 54 23 chr9 103151268 103151397 -20924775 - L1MEc LINE L1 -6201 199 67 2 1371 242 56 28 0 chr9 103151711 103151747 -20924425 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1371 929 273 54 46 chr9 103151747 103152027 -20924145 - B4A SINE B4 -10 282 1 2 1371 240 86 0 0 chr9 103152289 103152324 -20923848 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1371 657 335 56 5 chr9 103152343 103152559 -20923613 - B4A SINE B4 -8 284 58 2 1371 433 322 33 17 chr9 103152626 103152746 -20923426 - RSINE1 SINE B4 0 165 44 2 171 2131 99 46 0 chr9 103153502 103153806 -20922366 + ORR1A3 LTR MaLR 1 318 -8 2 1372 399 281 15 45 chr9 103154472 103154606 -20921566 + MIRb SINE MIR 56 185 -83 2 1372 4421 38 0 2 chr9 103154606 103155110 -20921062 - RLTR1C LTR ERV1 0 503 1 2 1372 2344 198 14 25 chr9 103155196 103155683 -20920489 + RLTR16 LTR ERVK 1 482 -23 2 1372 1378 246 95 18 chr9 103155928 103156317 -20919855 + MTD LTR MaLR 1 419 0 2 1372 632 165 24 32 chr9 103157173 103157198 -20918974 + RSINE1 SINE B4 2 26 -139 2 1372 1152 92 0 0 chr9 103157198 103157361 -20918811 + (GAAA)n Simple_repeat Simple_repeat 1 163 0 2 1372 632 165 24 32 chr9 103157361 103157460 -20918712 + RSINE1 SINE B4 27 124 -41 2 1372 1002 213 71 5 chr9 103157516 103157714 -20918458 + B3 SINE B2 6 216 0 2 1372 243 233 95 14 chr9 103157736 103157810 -20918362 + ID4 SINE ID 4 83 0 2 1372 955 159 7 0 chr9 103157888 103158033 -20918139 + B1_Mus1 SINE Alu 2 147 -1 2 1372 204 94 57 0 chr9 103158033 103158086 -20918086 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 2 1372 1064 157 11 27 chr9 103158090 103158274 -20917898 + B2_Mm2 SINE B2 1 181 -14 2 1372 414 201 64 179 chr9 103158323 103158541 -20917631 + B2_Mm2 SINE B2 2 194 -1 2 1372 510 257 9 9 chr9 103159403 103159509 -20916663 + PB1D10 SINE Alu 12 117 0 2 1372 532 294 0 9 chr9 103159534 103159644 -20916528 + RSINE1 SINE B4 30 138 -27 2 1372 698 78 10 0 chr9 103159671 103159773 -20916399 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 2 1372 684 125 0 0 chr9 103160092 103160220 -20915952 + (CA)n Simple_repeat Simple_repeat 2 129 0 2 1372 788 211 0 157 chr9 103160653 103160883 -20915289 + B3A SINE B2 5 198 0 2 1372 1311 192 8 4 chr9 103161960 103162195 -20913977 + B4A SINE B4 2 237 -55 2 1372 212 195 0 24 chr9 103162191 103162233 -20913939 + B1F2 SINE Alu 23 63 -86 2 1372 289 230 135 0 chr9 103162200 103162274 -20913898 + PB1D9 SINE Alu 31 114 -6 2 1372 335 304 0 61 chr9 103162253 103162351 -20913821 + B4A SINE B4 201 292 0 2 1372 223 89 0 100 chr9 103162356 103162406 -20913766 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 2 1372 508 157 10 98 chr9 103162428 103162461 -20913711 + MT2B LTR ERVL 154 184 -417 2 1372 901 45 0 0 chr9 103162461 103162571 -20913601 + B1_Mus1 SINE Alu 1 110 -38 2 1372 1033 89 6 12 chr9 103162580 103162740 -20913432 + (GAAAA)n Simple_repeat Simple_repeat 4 162 0 2 1372 481 272 53 0 chr9 103163753 103163867 -20912305 + ID_B1 SINE B4 90 209 -15 2 1372 247 49 49 0 chr9 103163892 103163933 -20912239 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1372 447 19 0 0 chr9 103166052 103166104 -20910068 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1372 198 0 0 0 chr9 103166446 103166468 -20909704 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2 1372 271 248 23 31 chr9 103166547 103166676 -20909496 + GA-rich Low_complexity Low_complexity 1 128 0 2 1372 1127 234 180 6 chr9 103166681 103167004 -20909168 + MTE2b LTR MaLR 1 379 0 3 1372 293 280 72 85 chr9 103167471 103167628 -20908544 - MER5A DNA MER1_type -32 157 14 3 1372 223 311 65 32 chr9 103167949 103168072 -20908100 + MIRb SINE MIR 61 187 -81 3 1372 757 245 39 19 chr9 103168231 103168439 -20907733 - B3 SINE B2 -4 212 1 3 1372 342 0 0 0 chr9 103169476 103169514 -20906658 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1372 1064 81 174 0 chr9 103171447 103171608 -20904564 + B2_Mm2 SINE B2 1 189 -6 3 1372 840 178 165 22 chr9 103172232 103172456 -20903716 + RMER4B LTR ERVK 1 256 -329 3 1372 746 133 6 29 chr9 103172461 103172632 -20903540 + GA-rich Low_complexity Low_complexity 2 168 0 3 1372 812 207 176 59 chr9 103172656 103172944 -20903228 + RMER4B LTR ERVK 267 611 0 3 1372 275 49 0 24 chr9 103172982 103173024 -20903148 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1372 401 246 78 21 chr9 103173034 103173197 -20902975 + Tigger7 DNA MER2_type 15 188 -151 3 1372 270 257 14 0 chr9 103173317 103173391 -20902781 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 3 1372 592 252 14 22 chr9 103173943 103174081 -20902091 + ID_B1 SINE B4 84 220 -4 3 1372 288 0 0 0 chr9 103174214 103174246 -20901926 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1372 216 256 141 22 chr9 103175369 103175487 -20900685 - MIRm SINE MIR -64 144 18 3 1372 1022 307 65 31 chr9 103175623 103175976 -20900196 + MLT1C LTR MaLR 18 382 -85 3 1372 264 79 0 0 chr9 103175977 103176015 -20900157 + B1_Mus1 SINE Alu 1 38 -110 3 1372 447 145 0 0 chr9 103176017 103176100 -20900072 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1372 395 75 0 19 chr9 103176100 103176154 -20900018 + HAL1-3A_ME LINE L1 1975 2027 -831 3 1372 252 238 0 0 chr9 103176163 103176268 -20899904 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 1372 1566 185 45 50 chr9 103176276 103176679 -20899493 + RMER17C LTR ERVK 1 401 -9 3 1372 3550 152 137 18 chr9 103177680 103178350 -20897822 + Lx5 LINE L1 6301 7050 0 3 1372 765 152 8 23 chr9 103178477 103178605 -20897567 + B1_Mur4 SINE Alu 19 144 -6 3 1372 933 230 35 214 chr9 103179006 103179459 -20896713 + MTEa LTR MaLR 4 375 -4 3 1372 600 170 161 0 chr9 103179459 103179571 -20896601 + B3 SINE B2 1 130 -86 3 1372 58 74 0 0 chr9 103179613 103179734 -20896438 + AT_rich Low_complexity Low_complexity 1 121 0 3 1372 1156 131 10 40 chr9 103180594 103180793 -20895379 + B2_Mm2 SINE B2 1 193 -2 3 1372 857 220 346 11 chr9 103181280 103181443 -20894729 + MTEb LTR MaLR 2 166 -213 3 1372 531 0 0 0 chr9 103181443 103181502 -20894670 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1372 857 220 346 11 chr9 103181502 103181618 -20894554 + MTEb LTR MaLR 167 374 -5 3 1372 296 323 172 16 chr9 103182079 103182271 -20893901 + Tigger5 DNA MER2_type 1 222 -2184 3 1372 1660 211 55 30 chr9 103182927 103183288 -20892884 + MTEb LTR MaLR 3 372 -7 3 1372 869 152 6 89 chr9 103183596 103183641 -20892531 - B2_Mm2 SINE B2 0 195 162 3 1372 180 0 0 0 chr9 103183641 103183661 -20892511 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1372 869 152 6 89 chr9 103183661 103183795 -20892377 - B2_Mm2 SINE B2 -34 161 31 3 1372 482 259 121 29 chr9 103183854 103184061 -20892111 + MLT2F LTR ERVL 417 642 -21 3 1372 189 74 0 0 chr9 103184069 103184096 -20892076 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 3 1372 479 195 58 0 chr9 103184180 103184267 -20891905 + B1_Mus1 SINE Alu 1 92 -56 3 1372 334 268 30 20 chr9 103184321 103184420 -20891752 + B1_Mur2 SINE Alu 3 102 -47 3 1372 738 184 42 26 chr9 103184437 103184609 -20891563 - B3 SINE B2 0 195 15 3 1372 574 262 30 98 chr9 103185108 103185311 -20890861 + B3A SINE B2 8 196 -2 3 1372 1214 61 0 0 chr9 103185432 103185579 -20890593 + B1_Mus2 SINE Alu 1 147 0 3 1372 409 207 71 9 chr9 103185599 103185711 -20890461 + L1M3 LINE L1 5588 5706 -474 3 1372 1699 21 0 0 chr9 103185784 103185974 -20890198 + B2_Mm1a SINE B2 2 191 -2 3 1372 847 130 43 55 chr9 103185976 103186139 -20890033 + B2_Mm2 SINE B2 34 194 -1 3 1372 375 281 144 27 chr9 103186241 103186364 -20889808 + L1MB7 LINE L1 5602 5746 -438 3 1372 1142 51 0 0 chr9 103186364 103186502 -20889670 + B1_Mus2 SINE Alu 1 138 -9 3 1372 183 42 0 0 chr9 103186502 103186526 -20889646 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1372 375 281 144 27 chr9 103186526 103186657 -20889515 + L1MB7 LINE L1 5747 5886 -298 3 1372 337 278 134 0 chr9 103186700 103186797 -20889375 + B4A SINE B4 121 230 -62 3 1372 258 156 0 0 chr9 103186917 103186962 -20889210 + GA-rich Low_complexity Low_complexity 1 45 0 3 1372 327 202 10 21 chr9 103187539 103187635 -20888537 + GA-rich Low_complexity Low_complexity 3 97 0 3 1372 494 248 35 0 chr9 103187646 103187759 -20888413 + RSINE1 SINE B4 4 120 -45 3 1372 327 266 210 25 chr9 103187874 103188036 -20888136 + L1MB7 LINE L1 5971 6162 -17 3 1372 444 177 7 14 chr9 103188330 103188473 -20887699 + (CA)n Simple_repeat Simple_repeat 2 143 0 3 1372 699 140 6 13 chr9 103188509 103188668 -20887504 + (CA)n Simple_repeat Simple_repeat 2 159 0 3 1372 216 111 0 0 chr9 103189850 103189886 -20886286 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1372 275 299 91 20 chr9 103189922 103190021 -20886151 - RSINE1 SINE B4 -45 120 15 3 1372 182 37 37 0 chr9 103190055 103190082 -20886090 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1372 727 241 141 13 chr9 103190091 103190318 -20885854 - Lx6 LINE L1 -31 7429 7174 3 1372 222 37 0 0 chr9 103190963 103190990 -20885182 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 3 1372 330 328 102 0 chr9 103191603 103191731 -20884441 + B1F SINE Alu 2 142 -7 3 1372 719 161 35 35 chr9 103191742 103191884 -20884288 + B3A SINE B2 2 143 -55 3 1372 197 59 0 56 chr9 103192528 103192564 -20883608 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1372 466 244 16 50 chr9 103192575 103192696 -20883476 - PB1D10 SINE Alu 0 117 1 3 1372 247 328 0 0 chr9 103192726 103192793 -20883379 - ID4_ SINE ID -14 69 3 3 1372 777 273 5 31 chr9 103192815 103193008 -20883164 - B3 SINE B2 -28 188 1 3 1372 301 265 92 64 chr9 103193012 103193153 -20883019 - L1M5 LINE L1 -2296 3850 3706 3 1372 576 213 163 94 chr9 103193160 103193292 -20882880 + B3 SINE B2 1 156 -60 3 1372 459 112 0 0 chr9 103193292 103193372 -20882800 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1372 576 213 163 94 chr9 103193372 103193383 -20882789 + B3 SINE B2 157 157 -59 3 1372 3251 45 134 0 chr9 103193383 103193802 -20882370 + MT2C_Mm LTR ERVL 1 475 0 3 1372 576 213 163 94 chr9 103193802 103193859 -20882313 + B3 SINE B2 157 216 0 3 1372 275 344 48 65 chr9 103193901 103194033 -20882139 - L1M5 LINE L1 -2432 3714 3589 3 1372 1182 54 0 13 chr9 103194033 103194182 -20881990 + B1_Mus2 SINE Alu 1 147 0 3 1372 275 344 48 65 chr9 103194182 103194279 -20881893 - L1M5 LINE L1 -2558 3588 3489 3 1372 272 234 0 0 chr9 103194310 103194357 -20881815 - ID4_ SINE ID -9 74 28 3 1372 345 257 69 10 chr9 103194381 103194483 -20881689 - PB1D10 SINE Alu 0 117 10 3 1372 870 141 34 27 chr9 103194506 103194638 -20881534 + B1_Mus1 SINE Alu 2 135 -13 3 1372 183 42 0 0 chr9 103194638 103194662 -20881510 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3 1372 870 141 34 27 chr9 103194662 103194675 -20881497 + B1_Mus1 SINE Alu 136 148 0 3 1372 1167 82 0 0 chr9 103194706 103194853 -20881319 - B1_Mus2 SINE Alu 0 147 1 3 1372 816 189 116 21 chr9 103194934 103195123 -20881049 - B3 SINE B2 -7 209 3 3 1372 463 267 0 10 chr9 103195147 103195244 -20880928 + B4A SINE B4 1 96 -196 3 1372 494 183 0 0 chr9 103195244 103195326 -20880846 + B3 SINE B2 1 82 -134 3 1372 247 354 0 48 chr9 103195326 103195348 -20880824 + RSINE1 SINE B4 2 100 -65 3 1372 694 167 105 8 chr9 103195366 103195499 -20880673 + B1_Mus2 SINE Alu 1 146 -1 3 1372 559 239 171 6 chr9 103195505 103195686 -20880486 + B4A SINE B4 82 292 0 3 1372 518 98 0 12 chr9 103195702 103195785 -20880387 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1372 247 319 0 0 chr9 103195855 103195927 -20880245 - ID2 SINE ID -10 73 2 3 1372 203 175 0 0 chr9 103195937 103195977 -20880195 + A-rich Low_complexity Low_complexity 5 44 0 3 1372 259 219 43 0 chr9 103195978 103196050 -20880122 - B1F SINE Alu -1 148 37 3 1372 872 229 5 74 chr9 103196204 103196393 -20879779 + B3A SINE B2 2 177 -21 3 1372 293 171 65 13 chr9 103196442 103196519 -20879653 - L1M5 LINE L1 -2941 3205 3125 3 1372 210 237 16 48 chr9 103196560 103196622 -20879550 - PB1 SINE Alu 0 127 68 3 1372 1053 82 15 0 chr9 103196676 103196811 -20879361 - B1_Mus1 SINE Alu -7 141 5 3 1372 491 294 50 0 chr9 103197178 103197297 -20878875 + ID_B1 SINE B4 80 204 -20 3 1372 455 256 88 29 chr9 103197184 103197298 -20878874 + B1F SINE Alu 5 130 -19 3 1372 293 0 0 26 chr9 103197298 103197336 -20878836 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 3 1372 455 256 88 29 chr9 103197336 103197358 -20878814 + B1F SINE Alu 131 149 0 3 1372 181 314 124 35 chr9 103197428 103197573 -20878599 - MIR SINE MIR -18 244 87 3 1372 940 88 0 93 chr9 103197609 103197760 -20878412 - B1_Mus1 SINE Alu -2 146 10 3 1372 878 85 8 0 chr9 103197764 103197893 -20878279 + (TTTC)n Simple_repeat Simple_repeat 1 130 0 3 1372 1319 85 6 6 chr9 103197893 103198071 -20878101 - B2_Mm1t SINE B2 -15 178 1 3 1372 207 0 0 0 chr9 103198085 103198108 -20878064 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1372 1203 55 7 0 chr9 103198117 103198263 -20877909 - B1_Mus2 SINE Alu 0 147 1 3 1372 385 278 27 18 chr9 103198306 103198416 -20877756 - LTR16C LTR ERVL -97 392 282 3 1372 345 214 11 43 chr9 103202967 103203042 -20873130 + ORR1D2 LTR MaLR 1 72 -298 3 1372 1816 217 70 8 chr9 103203042 103203428 -20872744 + MTD LTR MaLR 2 411 -8 3 1372 378 251 189 84 chr9 103203911 103204102 -20872070 + ORR1D2 LTR MaLR 93 303 -67 3 1372 512 283 7 0 chr9 103204132 103204277 -20871895 + B1F SINE Alu 3 148 -1 3 1372 506 91 13 0 chr9 103204277 103204354 -20871818 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1372 278 317 201 19 chr9 103204537 103204746 -20871426 - MLT1J-int LTR MaLR -952 435 189 3 1372 259 338 0 39 chr9 103204935 103205012 -20871160 + B4 SINE B4 215 288 -4 3 1372 795 229 71 5 chr9 103205073 103205257 -20870915 + B3A SINE B2 1 196 -2 4 1372 903 188 61 11 chr9 103205295 103205508 -20870664 + MTD LTR MaLR 81 289 -118 4 1372 484 167 35 12 chr9 103205656 103205741 -20870431 - ID SINE ID -137 87 1 4 1372 773 126 62 8 chr9 103205920 103206048 -20870124 + B1_Mur3 SINE Alu 5 139 -10 4 1372 207 0 0 0 chr9 103206048 103206071 -20870101 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1372 243 0 0 0 chr9 103206134 103206161 -20870011 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1372 1009 68 6 58 chr9 103206161 103206309 -20869863 - B1_Mus1 SINE Alu -7 141 2 4 1372 449 251 356 5 chr9 103206318 103206530 -20869642 - MER31A LTR ERV1 -196 289 1 4 1372 778 254 120 36 chr9 103206531 103206897 -20869275 + L1_Rod LINE L1 4828 5199 -648 4 1372 1052 67 37 0 chr9 103206927 103207062 -20869110 - B1_Mus1 SINE Alu -8 140 1 4 1372 32 86 0 0 chr9 103207586 103207667 -20868505 + GC_rich Low_complexity Low_complexity 1 81 0 4 1372 507 181 118 22 chr9 103208187 103208323 -20867849 + B1_Mur4 SINE Alu 2 150 0 4 1372 255 79 0 0 chr9 103208916 103208954 -20867218 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1372 411 21 0 0 chr9 103208954 103209002 -20867170 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1372 419 214 113 28 chr9 103209075 103209181 -20866991 + MER5A1 DNA MER1_type 47 161 -5 4 1372 343 339 41 41 chr9 103209226 103209398 -20866774 - L2a LINE L2 -1 3425 3254 4 1372 470 262 19 0 chr9 103209413 103209516 -20866656 - PB1D10 SINE Alu -10 107 3 4 1372 371 301 19 10 chr9 103209425 103209529 -20866643 - ID_B1 SINE B4 -48 176 72 4 1372 429 268 205 0 chr9 103209823 103209935 -20866237 - RSINE1 SINE B4 -19 146 12 4 1372 693 175 63 8 chr9 103210405 103210532 -20865640 + B1_Mur4 SINE Alu 1 134 -16 4 1372 21 0 0 0 chr9 103210535 103210556 -20865616 + GC_rich Low_complexity Low_complexity 1 21 0 4 1372 822 276 46 34 chr9 103210593 103210856 -20865316 - B4A SINE B4 -26 266 1 4 1372 191 215 0 15 chr9 103211259 103211325 -20864847 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1372 463 308 62 12 chr9 103211501 103211657 -20864515 + B3A SINE B2 7 164 -31 4 1372 234 0 0 0 chr9 103211657 103211683 -20864489 + (CATA)n Simple_repeat Simple_repeat 2 27 0 4 1372 379 310 94 50 chr9 103211683 103211706 -20864466 + B2_Mm2 SINE B2 165 194 -1 4 1372 909 235 22 11 chr9 103211707 103211888 -20864284 - B3 SINE B2 -10 206 24 4 1372 21 36 0 0 chr9 103211888 103211916 -20864256 + AT_rich Low_complexity Low_complexity 1 28 0 4 1372 643 133 148 69 chr9 103212430 103212632 -20863540 - Lx9 LINE L1 -4 7640 7423 4 1372 486 217 25 34 chr9 103212798 103212917 -20863255 + PB1D9 SINE Alu 3 120 0 4 1372 629 176 78 23 chr9 103212944 103213072 -20863100 + B1_Mus1 SINE Alu 13 147 -1 4 1372 476 145 0 0 chr9 103213337 103213406 -20862766 - ID4_ SINE ID -12 71 3 4 1372 996 203 39 39 chr9 103213526 103213731 -20862441 + B3 SINE B2 1 205 -11 4 1372 372 43 0 0 chr9 103215770 103215816 -20860356 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 4 1372 462 78 0 0 chr9 103215816 103215880 -20860292 - B1_Mur4 SINE Alu 0 150 87 4 1372 304 282 13 0 chr9 103216197 103216275 -20859897 - ID4 SINE ID -3 80 2 4 1372 1274 40 0 0 chr9 103216548 103216696 -20859476 + B1_Mus1 SINE Alu 1 148 0 4 1372 528 242 121 0 chr9 103216730 103216854 -20859318 + B1_Mur1 SINE Alu 2 140 -9 4 1372 1295 182 0 5 chr9 103216861 103217076 -20859096 + B3 SINE B2 3 216 0 4 1372 1285 27 0 0 chr9 103217082 103217228 -20858944 + B1_Mus2 SINE Alu 2 147 0 4 1372 279 293 80 0 chr9 103217614 103217689 -20858483 + ID2 SINE ID 3 83 0 4 1372 435 176 27 0 chr9 103217940 103218003 -20858169 - B1_Mus2 SINE Alu -2 145 81 4 1372 3447 171 102 158 chr9 103218003 103218940 -20857232 + RLTR25B LTR ERVK 1 885 -143 4 1372 579 88 0 0 chr9 103218940 103219031 -20857141 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 1372 3447 171 102 158 chr9 103219031 103219182 -20856990 + RLTR25B LTR ERVK 886 1028 0 4 1372 351 202 122 37 chr9 103219182 103219264 -20856908 - B1_Mur2 SINE Alu -59 90 2 4 1372 233 274 15 75 chr9 103219217 103219284 -20856888 - B4 SINE B4 -158 134 72 4 1372 831 254 10 72 chr9 103219320 103219515 -20856657 + ID_B1 SINE B4 41 223 -1 4 1372 1333 142 23 0 chr9 103219600 103219818 -20856354 - URR1B DNA MER1_type 0 225 3 4 1372 1169 55 14 0 chr9 103220006 103220151 -20856021 + B1_Mus2 SINE Alu 1 147 0 4 1372 368 302 85 31 chr9 103220922 103221052 -20855120 + RSINE1 SINE B4 23 159 -6 4 1372 571 256 33 0 chr9 103221911 103222032 -20854140 + RSINE1 SINE B4 39 163 -2 4 1372 183 80 0 0 chr9 103222035 103222060 -20854112 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1372 213 328 0 0 chr9 103222195 103222262 -20853910 + B4A SINE B4 3 69 -223 4 1372 211 312 13 13 chr9 103222262 103222273 -20853899 + B3A SINE B2 3 80 -118 4 1372 586 237 88 8 chr9 103223214 103223406 -20852766 - B3A SINE B2 -11 205 1 4 1372 29 60 0 0 chr9 103224010 103224060 -20852112 + AT_rich Low_complexity Low_complexity 1 50 0 4 1372 295 161 27 0 chr9 103224072 103224135 -20852037 - B2_Mm2 SINE B2 -102 114 47 4 1372 1199 92 27 49 chr9 103224167 103224350 -20851822 - B2_Mm1t SINE B2 -14 179 1 4 1372 1150 83 0 14 chr9 103224406 103224553 -20851619 - B1_Mus1 SINE Alu -2 146 2 4 1372 480 187 108 54 chr9 103224631 103224761 -20851411 + B1F2 SINE Alu 12 148 -1 4 1372 640 248 3 2 chr9 103224984 103225122 -20851050 - B1_Mur1 SINE Alu -3 144 5 4 1372 1464 205 11 50 chr9 103225142 103225501 -20850671 - Lx4B LINE L1 0 7058 6714 4 1372 273 239 105 9 chr9 103226094 103226208 -20849964 + RSINE1 SINE B4 2 126 -39 4 1372 487 68 40 13 chr9 103226276 103226351 -20849821 - B1_Mus2 SINE Alu -69 78 2 4 1372 315 228 9 114 chr9 103226351 103226390 -20849782 - MT2B LTR ERVL -366 235 134 4 1372 612 0 0 0 chr9 103226877 103226945 -20849227 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1372 212 208 18 36 chr9 103227249 103227304 -20848868 + CT-rich Low_complexity Low_complexity 3 56 0 4 1372 189 0 0 0 chr9 103227358 103227379 -20848793 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1372 1234 48 0 0 chr9 103227379 103227524 -20848648 - B1_Mus2 SINE Alu 0 147 3 4 1372 447 207 138 0 chr9 103227765 103227881 -20848291 - B1_Mur4 SINE Alu -16 134 3 4 1372 2577 89 180 0 chr9 103228269 103228720 -20847452 - RLTR47_MM LTR ERV1 0 532 1 4 1372 1514 176 185 8 chr9 103229006 103229362 -20846810 - MTD LTR MaLR 0 419 1 4 1372 217 338 0 0 chr9 103229935 103230003 -20846169 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1372 503 207 8 47 chr9 103230004 103230131 -20846041 - B4A SINE B4 0 292 171 4 1372 435 280 20 0 chr9 103230147 103230247 -20845925 - B4A SINE B4 -185 107 6 4 1372 387 279 153 23 chr9 103230347 103230523 -20845649 - RMER30 DNA MER1_type -1 201 3 4 1372 228 294 161 56 chr9 103231334 103231514 -20844658 - Tigger10 DNA Tigger -68 1775 1577 4 1372 371 232 52 24 chr9 103231645 103231760 -20844412 + B1F SINE Alu 1 112 -5 4 1372 936 117 14 14 chr9 103231813 103231960 -20844212 - B1_Mus1 SINE Alu 0 148 2 4 1372 535 172 197 0 chr9 103232881 103233003 -20843169 - B1_Mus2 SINE Alu 0 147 2 4 1372 469 257 28 0 chr9 103233328 103233437 -20842735 - PB1D9 SINE Alu -8 112 1 4 1372 180 111 0 0 chr9 103233443 103233470 -20842702 + (TCTCC)n Simple_repeat Simple_repeat 5 31 0 4 1372 306 0 0 0 chr9 103233473 103233507 -20842665 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1372 214 304 116 0 chr9 103233579 103233648 -20842524 - ID SINE ID -140 84 8 4 1372 987 212 14 19 chr9 103234608 103234815 -20841357 - B3 SINE B2 -10 206 1 4 1372 227 329 12 0 chr9 103234921 103235006 -20841166 + CT-rich Low_complexity Low_complexity 3 88 0 4 1372 547 113 171 17 chr9 103235801 103235918 -20840254 + B1_Mur2 SINE Alu 6 140 -9 4 1372 219 292 0 71 chr9 103235929 103235999 -20840173 + ID4_ SINE ID 8 72 -11 4 1372 189 107 0 0 chr9 103236846 103236874 -20839298 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 4 1372 611 166 157 50 chr9 103236874 103237033 -20839139 - B2_Mm2 SINE B2 -18 177 2 4 1372 1455 41 41 0 chr9 103237135 103237307 -20838865 + B2_Mm2 SINE B2 1 179 -16 4 1372 223 255 0 0 chr9 103237307 103237358 -20838814 + GA-rich Low_complexity Low_complexity 1 51 0 4 1372 426 270 50 0 chr9 103237365 103237465 -20838707 + RSINE1 SINE B4 25 129 -36 4 1372 467 33 16 0 chr9 103237851 103237912 -20838260 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 4 1372 1509 73 5 0 chr9 103237912 103238104 -20838068 - B2_Mm1a SINE B2 0 193 1 4 1372 675 133 100 0 chr9 103238544 103238664 -20837508 - B1_Mus2 SINE Alu -11 136 5 4 1372 426 222 68 53 chr9 103238546 103238679 -20837493 - B4 SINE B4 -79 213 79 4 1372 339 286 78 16 chr9 103238686 103238814 -20837358 - Tigger1 DNA MER2_type -1284 1134 999 4 1372 910 232 112 18 chr9 103238860 103239137 -20837035 - Tigger1 DNA MER2_type -1787 631 329 4 1372 192 77 0 0 chr9 103239243 103239269 -20836903 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1372 254 256 100 0 chr9 103239982 103240072 -20836100 + PB1D10 SINE Alu 1 99 -18 4 1372 321 241 77 9 chr9 103240352 103240457 -20835715 + B1F SINE Alu 9 114 -35 4 1372 743 167 7 61 chr9 103240773 103240920 -20835252 - B1_Mus1 SINE Alu 0 148 10 4 1372 239 329 24 12 chr9 103240847 103240930 -20835242 - B4A SINE B4 -125 167 84 5 1372 186 167 0 0 chr9 103240932 103240968 -20835204 + T-rich Low_complexity Low_complexity 1 36 0 5 1372 290 321 0 0 chr9 103241279 103241360 -20834812 - RSINE1 SINE B4 0 165 85 5 1372 425 262 111 0 chr9 103241480 103241606 -20834566 - B1F1 SINE Alu -1 148 9 5 1372 405 288 64 14 chr9 103241487 103241628 -20834544 - ID_B1 SINE B4 -8 216 69 5 1372 233 265 58 46 chr9 103241619 103241706 -20834466 - PB1D10 SINE Alu -20 97 10 5 1372 233 265 58 46 chr9 103241729 103241816 -20834356 - PB1D10 SINE Alu -20 97 10 5 1372 372 182 24 35 chr9 103242033 103242126 -20834046 - PB1D9 SINE Alu -2 147 41 5 1372 470 198 0 0 chr9 103242138 103242224 -20833948 - B1_Mur2 SINE Alu -28 121 36 5 1372 659 255 45 13 chr9 103242276 103242431 -20833741 + RSINE1 SINE B4 6 165 0 5 1372 329 270 10 40 chr9 103242501 103242602 -20833570 + B3A SINE B2 73 172 -26 5 1372 3606 15 2 0 chr9 103242685 103243080 -20833092 + MTA_Mm LTR MaLR 1 396 0 5 1372 493 179 32 0 chr9 103243156 103243251 -20832921 + B1_Mur2 SINE Alu 34 131 -18 5 1372 33 18 0 51 chr9 103243432 103243457 -20832715 + AT_rich Low_complexity Low_complexity 1 24 0 5 1372 1194 42 7 0 chr9 103243457 103243601 -20832571 + B1_Mus2 SINE Alu 3 147 0 5 1372 33 18 0 51 chr9 103243601 103243634 -20832538 + AT_rich Low_complexity Low_complexity 1 32 0 5 1372 294 261 73 98 chr9 103243692 103243714 -20832458 + PB1D9 SINE Alu 1 22 -98 5 1372 889 224 316 0 chr9 103243714 103244031 -20832141 + MTD LTR MaLR 1 417 -2 5 1372 294 261 73 98 chr9 103244031 103244131 -20832041 + PB1D9 SINE Alu 23 120 0 5 1372 3200 143 57 14 chr9 103244661 103245306 -20830866 - RMER6A LTR ERVK -83 673 1 5 1372 305 253 52 18 chr9 103245640 103245743 -20830429 - B1F1 SINE Alu -8 109 4 5 1372 1198 74 0 0 chr9 103246547 103246695 -20829477 - B1_Mus1 SINE Alu 0 148 1 5 1372 207 114 29 0 chr9 103246766 103246801 -20829371 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1372 22 0 0 0 chr9 103247033 103247055 -20829117 + AT_rich Low_complexity Low_complexity 1 22 0 5 1372 226 267 67 0 chr9 103248344 103248419 -20827753 + PB1D9 SINE Alu 40 119 -1 5 1372 250 239 60 0 chr9 103248572 103248639 -20827533 + PB1D10 SINE Alu 10 80 -37 5 1372 594 257 106 28 chr9 103248691 103248871 -20827301 + B3 SINE B2 2 195 -21 5 1372 549 218 113 20 chr9 103249465 103249615 -20826557 - RSINE1 SINE B4 0 165 2 5 1372 210 266 94 0 chr9 103249857 103249921 -20826251 + B3 SINE B2 1 70 -146 5 1372 180 228 0 0 chr9 103249942 103249999 -20826173 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1372 555 243 63 106 chr9 103249999 103250188 -20825984 - B3A SINE B2 -16 182 2 5 1372 547 287 74 50 chr9 103250286 103250624 -20825548 - L1ME2z LINE L1 -177 6267 5922 5 1372 282 56 0 0 chr9 103251252 103251288 -20824884 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1372 291 257 149 0 chr9 103251545 103251619 -20824553 + B4 SINE B4 47 131 -161 5 1372 392 246 100 0 chr9 103251652 103251752 -20824420 + B1F SINE Alu 6 113 -36 5 1372 342 0 0 0 chr9 103251752 103251790 -20824382 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 5 1372 381 316 9 0 chr9 103251790 103251803 -20824369 + PB1D7 SINE Alu 107 119 -1 5 1372 238 240 120 0 chr9 103252832 103252907 -20823265 + PB1D7 SINE Alu 20 103 -17 5 1372 344 192 290 8 chr9 103253706 103253837 -20822335 + ID_B1 SINE B4 49 216 -8 5 1372 210 229 62 0 chr9 103253795 103253843 -20822329 + PB1D7 SINE Alu 68 118 -2 5 1372 281 177 186 10 chr9 103254129 103254226 -20821946 + L1MB8 LINE L1 5841 5954 -224 5 1372 245 295 25 13 chr9 103254448 103254527 -20821645 + ID_B1 SINE B4 137 216 -8 5 1372 211 108 81 0 chr9 103254730 103254767 -20821405 + B3A SINE B2 16 55 -143 5 1372 313 200 133 0 chr9 103255020 103255095 -20821077 + B3 SINE B2 30 114 -102 5 1372 285 29 0 0 chr9 103257718 103257752 -20818420 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1372 28 0 0 0 chr9 103259028 103259056 -20817116 + AT_rich Low_complexity Low_complexity 1 28 0 5 1372 363 216 77 115 chr9 103259398 103259581 -20816591 + MT2B2 LTR ERVL 89 264 -320 5 1372 1089 43 0 0 chr9 103259474 103259615 -20816557 + B1_Mus2 SINE Alu 6 146 -1 5 1372 355 189 133 0 chr9 103259638 103259728 -20816444 + PB1D10 SINE Alu 12 113 -4 5 1372 1401 65 11 11 chr9 103259869 103260055 -20816117 - B2_Mm1a SINE B2 -7 186 1 5 1372 256 154 108 0 chr9 103260057 103260122 -20816050 - PB1D9 SINE Alu -26 94 23 5 1372 341 204 107 48 chr9 103260125 103260228 -20815944 - MER3 DNA MER1_type -29 180 72 5 1372 395 311 26 45 chr9 103260387 103260542 -20815630 - B3 SINE B2 -50 166 15 5 1372 189 0 0 0 chr9 103260954 103260975 -20815197 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1372 504 267 122 55 chr9 103261011 103261249 -20814923 + B4A SINE B4 29 282 -10 5 1372 549 0 0 0 chr9 103261260 103261321 -20814851 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1372 265 261 174 0 chr9 103261442 103261534 -20814638 + ID_B1 SINE B4 96 203 -21 5 1372 284 308 25 25 chr9 103261554 103261634 -20814538 + ID4_ SINE ID 2 81 -2 5 1372 310 281 71 71 chr9 103261712 103261896 -20814276 + B4A SINE B4 109 292 0 5 1372 433 263 25 8 chr9 103262434 103262553 -20813619 - B1_Mur1 SINE Alu -5 144 24 5 1372 388 243 117 36 chr9 103262557 103262668 -20813504 - RSINE1 SINE B4 -44 121 2 5 1372 573 231 29 71 chr9 103262831 103262971 -20813201 - ID_B1 SINE B4 -13 211 78 5 1372 454 263 79 0 chr9 103263250 103263364 -20812808 + RSINE1 SINE B4 31 153 -12 5 1372 229 329 12 12 chr9 103264171 103264251 -20811921 + B4A SINE B4 24 103 -189 5 1372 278 296 36 36 chr9 103264603 103264743 -20811429 - B1F SINE Alu 0 149 10 5 1372 575 234 45 157 chr9 103264774 103264953 -20811219 + B3A SINE B2 36 211 -5 5 1372 263 304 83 42 chr9 103266607 103266703 -20809469 + RSINE1 SINE B4 58 157 -8 5 1372 207 0 0 0 chr9 103266736 103266759 -20809413 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1372 294 272 222 26 chr9 103266766 103266781 -20809391 + ID_B1 SINE B4 78 217 -7 5 1372 554 196 0 0 chr9 103266781 103266883 -20809289 + PB1D9 SINE Alu 12 113 -7 5 1372 24 103 0 0 chr9 103267214 103267301 -20808871 + GC_rich Low_complexity Low_complexity 1 87 0 5 1372 21 0 0 0 chr9 103267328 103267349 -20808823 + GC_rich Low_complexity Low_complexity 1 21 0 5 1372 22 80 0 0 chr9 103267806 103267856 -20808316 + GC_rich Low_complexity Low_complexity 1 50 0 5 1372 195 220 0 0 chr9 103268000 103268050 -20808122 + GA-rich Low_complexity Low_complexity 2 51 0 5 1372 21 36 0 0 chr9 103268106 103268134 -20808038 + GC_rich Low_complexity Low_complexity 1 28 0 5 1372 498 276 97 5 chr9 103268934 103269120 -20807052 - ID_B1 SINE B4 -4 220 18 5 1372 821 172 28 0 chr9 103269622 103269767 -20806405 - B1_Mur2 SINE Alu 0 149 1 5 1372 210 319 28 0 chr9 103269912 103269984 -20806188 + CT-rich Low_complexity Low_complexity 4 77 0 5 1372 407 178 58 3 chr9 103270113 103270217 -20805955 - PB1D9 SINE Alu -1 119 6 5 1372 425 259 69 0 chr9 103270344 103270460 -20805712 - B3A SINE B2 -71 127 4 5 1372 269 357 0 18 chr9 103270470 103270584 -20805588 - PB1D10 SINE Alu -5 112 1 5 1372 243 220 0 33 chr9 103270661 103270722 -20805450 - B4 SINE B4 -20 272 214 5 1372 215 271 0 114 chr9 103270720 103270799 -20805373 - RSINE1 SINE B4 0 165 96 5 1372 571 191 0 57 chr9 103270852 103270974 -20805198 - B4A SINE B4 -68 224 110 5 1372 335 253 24 0 chr9 103271435 103271518 -20804654 + B4 SINE B4 1 85 -207 5 1372 407 187 49 130 chr9 103271787 103271910 -20804262 - RMER10A LTR ERVL -25 417 305 5 1372 417 20 0 0 chr9 103271948 103271998 -20804174 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1372 329 234 61 50 chr9 103272023 103272122 -20804050 - RMER10A LTR ERVL -331 111 12 5 1372 391 250 198 8 chr9 103272120 103272241 -20803931 - B1_Mur1 SINE Alu -5 144 1 5 1372 198 0 0 0 chr9 103273244 103273266 -20802906 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1372 1351 198 88 51 chr9 103273266 103273658 -20802514 + MTD LTR MaLR 13 400 -19 5 1372 279 284 63 0 chr9 103273729 103273824 -20802348 - PB1 SINE Alu -1 126 26 5 1372 2225 125 113 13 chr9 103273865 103274246 -20801926 + MTC LTR MaLR 1 419 -2 5 1372 180 0 0 0 chr9 103274246 103274266 -20801906 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 1372 459 0 0 0 chr9 103274266 103274316 -20801856 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1372 714 168 48 14 chr9 103274320 103274465 -20801707 - B3A SINE B2 -47 151 2 5 1372 365 283 0 9 chr9 103274478 103274592 -20801580 - PB1D10 SINE Alu 0 117 5 5 1372 276 30 0 0 chr9 103275428 103275461 -20800711 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1372 189 0 0 0 chr9 103275461 103275481 -20800691 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1372 525 241 22 8 chr9 103275557 103275691 -20800481 - B1_Mur1 SINE Alu 0 149 14 5 1372 1080 88 0 20 chr9 103275720 103275870 -20800302 - B1_Mus2 SINE Alu 0 147 1 5 1372 461 207 18 31 chr9 103275891 103276029 -20800143 - ID_B1 SINE B4 -53 171 35 5 1372 1026 214 39 0 chr9 103276186 103276392 -20799780 - B3 SINE B2 0 216 3 5 1372 270 194 47 31 chr9 103276516 103276580 -20799592 + B1F1 SINE Alu 51 115 -34 5 1372 523 254 17 0 chr9 103276560 103276678 -20799494 - RSINE1 SINE B4 -43 122 3 5 1372 343 219 36 12 chr9 103276713 103276796 -20799376 - B1F SINE Alu -12 137 53 6 1372 624 194 39 4 chr9 103277068 103277214 -20798958 - B1_Mur2 SINE Alu -2 148 2 6 1372 254 358 55 70 chr9 103277602 103277803 -20798369 - LTR31 LTR ERV1 -17 602 405 6 1372 245 366 32 0 chr9 103277872 103277965 -20798207 + PB1D10 SINE Alu 9 104 -13 6 1372 207 69 0 0 chr9 103277966 103277995 -20798177 + (CAA)n Simple_repeat Simple_repeat 1 29 0 6 1372 546 257 107 94 chr9 103277997 103278156 -20798016 + ID_B1 SINE B4 82 246 -46 6 1372 487 268 86 72 chr9 103278160 103278369 -20797803 + B3 SINE B2 1 212 -4 6 1372 347 272 136 0 chr9 103278549 103278652 -20797520 + ID_B1 SINE B4 88 204 -20 6 1372 546 272 15 7 chr9 103279424 103279561 -20796611 + ID_B1 SINE B4 80 217 -7 6 1372 428 0 19 0 chr9 103279566 103279618 -20796554 + (TAA)n Simple_repeat Simple_repeat 2 54 0 6 1372 412 300 0 8 chr9 103279681 103279802 -20796370 - PB1D7 SINE Alu 0 120 1 6 1372 582 256 173 0 chr9 103280512 103280680 -20795492 - Lx8 LINE L1 -164 7309 7113 6 1372 422 241 106 57 chr9 103280756 103280897 -20795275 - B1F SINE Alu -1 148 1 6 1372 1177 48 7 7 chr9 103280968 103281115 -20795057 - B1_Mm SINE Alu 0 147 1 6 1372 227 151 83 104 chr9 103281517 103281613 -20794559 - ORR1E LTR MaLR -54 305 212 6 1372 257 167 21 0 chr9 103281810 103281858 -20794314 + RSINE1 SINE B4 88 136 -29 6 1372 363 96 0 0 chr9 103281867 103281919 -20794253 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1372 182 287 218 16 chr9 103282137 103282261 -20793911 + MIRb SINE MIR 84 232 -36 6 1372 1063 220 125 58 chr9 103282299 103282436 -20793736 - ORR1D1 LTR MaLR 0 374 232 6 1372 408 20 0 0 chr9 103282436 103282485 -20793687 + (CAGG)n Simple_repeat Simple_repeat 2 50 0 6 1372 1063 220 125 58 chr9 103282485 103282660 -20793512 - ORR1D1 LTR MaLR -143 231 43 6 1372 460 288 77 168 chr9 103282672 103283089 -20793083 + MLT1C LTR MaLR 1 442 -25 6 1372 328 277 86 21 chr9 103283064 103283204 -20792968 - B1_Mur1 SINE Alu 0 149 1 6 1372 345 258 100 114 chr9 103283243 103283383 -20792789 - ID_B1 SINE B4 -4 220 83 6 1372 1201 41 0 33 chr9 103283407 103283559 -20792613 - B1_Mm SINE Alu 0 147 1 6 1372 512 289 120 26 chr9 103283601 103283793 -20792379 + B4A SINE B4 3 212 -80 6 1372 279 0 0 0 chr9 103283793 103283824 -20792348 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1372 713 288 15 10 chr9 103284008 103284208 -20791964 + B4A SINE B4 5 205 -87 6 1372 1400 0 0 6 chr9 103284214 103284375 -20791797 + (TTCCC)n Simple_repeat Simple_repeat 1 160 0 6 1372 537 58 0 0 chr9 103284377 103284446 -20791726 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 6 171 468 0 0 0 chr9 103284688 103284740 -20791432 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1373 875 289 127 106 chr9 103285689 103285974 -20790198 - MLT1F LTR MaLR 0 548 242 6 1373 474 252 18 0 chr9 103285974 103286085 -20790087 - MER81 DNA AcHobo 0 114 2 6 1373 875 289 127 106 chr9 103286085 103286258 -20789914 - MLT1F LTR MaLR -307 241 76 6 1373 1262 96 11 16 chr9 103286258 103286448 -20789724 + B2_Mm2 SINE B2 3 191 -4 6 1373 875 289 127 106 chr9 103286448 103286525 -20789647 - MLT1F LTR MaLR -473 75 1 6 1373 234 276 25 118 chr9 103286627 103286685 -20789487 - B1F2 SINE Alu -41 108 4 6 1373 253 224 69 0 chr9 103286685 103286743 -20789429 - ID_B1 SINE B4 -78 146 85 6 1373 256 305 136 19 chr9 103286821 103286975 -20789197 - MLT1F LTR MaLR -150 398 227 6 1373 396 0 0 0 chr9 103287275 103287319 -20788853 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1373 224 319 112 15 chr9 103287327 103287463 -20788709 - MIRc SINE MIR -71 197 47 6 1373 184 73 70 35 chr9 103287608 103287665 -20788507 + T-rich Low_complexity Low_complexity 5 63 0 6 1373 383 214 135 0 chr9 103287672 103287761 -20788411 - PB1D9 SINE Alu -10 110 10 6 1373 243 306 56 0 chr9 103287711 103287783 -20788389 - B4A SINE B4 -147 145 70 6 1373 752 209 0 7 chr9 103287799 103287948 -20788224 - B1_Mur4 SINE Alu -2 148 1 6 1373 288 0 0 0 chr9 103287963 103287995 -20788177 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1373 483 48 0 0 chr9 103287995 103288056 -20788116 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1373 859 253 182 18 chr9 103288110 103288552 -20787620 - RLTR28B LTR ERVL -20 504 1 6 1373 908 248 29 0 chr9 103288634 103288844 -20787328 + B3 SINE B2 1 216 0 6 1373 401 246 186 0 chr9 103288873 103288991 -20787181 - B1F SINE Alu -8 141 2 6 1373 298 258 93 0 chr9 103289111 103289208 -20786964 + MLT1F LTR MaLR 283 388 -160 6 1373 236 276 0 0 chr9 103290219 103290277 -20785895 - B1F SINE Alu -91 58 1 6 1373 232 278 0 18 chr9 103290302 103290357 -20785815 + PB1D10 SINE Alu 1 54 -63 6 1373 188 179 26 0 chr9 103290513 103290552 -20785620 + L2a LINE L2 3309 3348 -78 6 1373 233 250 32 54 chr9 103290623 103290716 -20785456 + BC1_Mm scRNA scRNA 28 118 -34 6 1373 987 210 24 24 chr9 103290749 103290959 -20785213 - ID_B1 SINE B4 0 224 15 6 1373 492 18 0 0 chr9 103290959 103291016 -20785156 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1373 325 137 38 76 chr9 103291040 103291119 -20785053 + PB1D10 SINE Alu 40 115 -2 6 1373 212 289 24 106 chr9 103291170 103291255 -20784917 + PB1 SINE Alu 39 116 -11 6 1373 695 322 39 24 chr9 103291619 103291950 -20784222 + L1MB5 LINE L1 5791 6126 -48 6 1373 222 299 99 40 chr9 103292559 103292629 -20783543 + ID_B1 SINE B4 81 157 -67 6 1373 876 199 126 0 chr9 103292629 103292820 -20783352 + B3 SINE B2 2 216 0 6 1373 222 299 99 40 chr9 103292820 103292850 -20783322 + ID_B1 SINE B4 158 186 -38 6 1373 253 297 0 13 chr9 103292837 103292912 -20783260 + B1F SINE Alu 68 141 -8 6 1373 483 306 53 7 chr9 103292916 103293152 -20783020 + B4 SINE B4 2 280 -12 6 1373 351 0 0 0 chr9 103293170 103293209 -20782963 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1373 438 20 0 0 chr9 103293209 103293259 -20782913 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1373 573 15 0 0 chr9 103293398 103293464 -20782708 + (TTCTC)n Simple_repeat Simple_repeat 4 69 0 6 1373 816 107 0 0 chr9 103293478 103293599 -20782573 + (TTCC)n Simple_repeat Simple_repeat 2 122 0 6 1373 540 274 50 44 chr9 103294127 103294337 -20781835 - ID_B1 SINE B4 -19 273 69 6 1373 349 318 53 20 chr9 103294385 103294536 -20781636 - MER103 DNA DNA -2 164 9 6 1373 650 235 58 48 chr9 103294732 103294920 -20781252 - B3A SINE B2 0 198 9 6 1373 326 286 33 25 chr9 103294906 103295028 -20781144 - B1F SINE Alu -15 134 12 6 1373 569 190 33 87 chr9 103295068 103295218 -20780954 + B1_Mur1 SINE Alu 3 144 -5 6 1373 426 85 0 0 chr9 103295218 103295277 -20780895 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 1373 774 32 0 0 chr9 103295281 103295374 -20780798 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 6 1373 362 351 0 0 chr9 103295388 103295499 -20780673 + PB1D10 SINE Alu 7 117 0 6 1373 412 338 6 61 chr9 103295507 103295605 -20780567 + ID_B1 SINE B4 70 168 -56 6 1373 1000 266 125 29 chr9 103295605 103295949 -20780223 + MTE2b LTR MaLR 1 377 -2 6 1373 412 338 6 61 chr9 103295949 103296014 -20780158 + ID_B1 SINE B4 169 224 0 6 1373 250 256 128 94 chr9 103296148 103296341 -20779831 - MIR SINE MIR -19 189 2 6 1373 521 15 0 15 chr9 103296342 103296409 -20779763 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 6 1373 204 194 48 0 chr9 103296445 103296507 -20779665 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1373 950 186 113 175 chr9 103296820 103297181 -20778991 + ORR1C2 LTR MaLR 4 341 -43 6 1373 1166 82 13 0 chr9 103297181 103297339 -20778833 + B2_Mm1a SINE B2 1 160 -33 6 1373 252 0 0 0 chr9 103297339 103297367 -20778805 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 6 1373 328 167 0 0 chr9 103297382 103297436 -20778736 + ORR1C2 LTR MaLR 331 384 0 6 1373 590 238 148 91 chr9 103297964 103298119 -20778053 + B3A SINE B2 1 166 -29 6 1373 330 67 0 0 chr9 103298119 103298164 -20778008 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1373 359 238 148 91 chr9 103298164 103298184 -20777988 + B2_Mm2 SINE B2 167 186 -9 6 1373 1182 55 0 7 chr9 103298220 103298367 -20777805 + B1_Mus2 SINE Alu 1 146 -1 6 1373 521 241 12 16 chr9 103298432 103298564 -20777608 + B3A SINE B2 27 155 -61 6 1373 615 230 28 33 chr9 103298726 103298906 -20777266 - B3A SINE B2 -16 182 4 6 1373 236 239 155 56 chr9 103298937 103299008 -20777164 - ID4 SINE ID -2 81 4 6 1373 757 258 68 0 chr9 103299041 103299231 -20776941 - B3 SINE B2 -13 203 1 6 1373 323 143 32 0 chr9 103299242 103299305 -20776867 + CT-rich Low_complexity Low_complexity 1 65 0 6 1373 264 345 0 0 chr9 103299306 103299422 -20776750 - PB1D10 SINE Alu 0 117 2 6 1373 411 294 44 86 chr9 103299847 103300208 -20775964 + ORR1E LTR MaLR 3 337 -33 6 1373 1137 44 0 21 chr9 103300412 103300552 -20775620 + B1_Mm SINE Alu 2 138 -9 6 1373 608 241 28 14 chr9 103300580 103300723 -20775449 + B1_Mur3 SINE Alu 2 146 -3 6 1373 22 0 0 0 chr9 103300786 103300808 -20775364 + AT_rich Low_complexity Low_complexity 1 22 0 6 1373 224 268 99 0 chr9 103301237 103301308 -20774864 - MIRc SINE MIR -1 267 190 6 1373 210 178 15 61 chr9 103301373 103301439 -20774733 + G-rich Low_complexity Low_complexity 1 63 0 6 1373 224 214 38 64 chr9 103301637 103301714 -20774458 + B3A SINE B2 1 73 -122 6 1373 701 212 0 42 chr9 103301690 103301833 -20774339 + B1_Mur4 SINE Alu 14 150 0 6 1373 584 266 29 23 chr9 103301864 103302037 -20774135 + B3 SINE B2 39 212 -4 6 1373 423 0 0 0 chr9 103302098 103302145 -20774027 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1373 255 254 0 31 chr9 103302227 103302292 -20773880 - RMER6B LTR ERVK -31 430 368 6 1373 1149 117 0 0 chr9 103302370 103302576 -20773596 + (TTC)n Simple_repeat Simple_repeat 1 206 0 6 1373 972 93 0 0 chr9 103302583 103302712 -20773460 - B1_Mus2 SINE Alu 0 147 19 7 1373 1211 55 0 7 chr9 103303099 103303246 -20772926 + B1_Mus2 SINE Alu 2 147 0 7 1373 1128 146 48 16 chr9 103303253 103303274 -20772898 - RMER21B LTR ERV1 -648 194 176 7 1373 210 37 0 0 chr9 103303274 103303301 -20772871 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1373 1128 146 48 16 chr9 103303301 103303467 -20772705 - RMER21B LTR ERV1 -667 175 1 7 1373 319 202 209 12 chr9 103303674 103303782 -20772390 - MTD LTR MaLR -16 403 288 7 1373 790 168 6 57 chr9 103303887 103304045 -20772127 + B1_Mur4 SINE Alu 1 150 0 7 1373 1376 161 164 3 chr9 103304075 103304368 -20771804 - ORR1D2 LTR MaLR -30 340 1 7 1373 430 255 86 79 chr9 103304368 103304649 -20771523 + ORR1E LTR MaLR 13 297 -73 7 1373 1097 88 0 13 chr9 103304649 103304798 -20771374 - B1_Mus2 SINE Alu 0 147 1 7 1373 403 295 91 73 chr9 103304798 103304854 -20771318 + ORR1E LTR MaLR 298 356 -14 7 1373 315 207 17 0 chr9 103304861 103304919 -20771253 - MLT2B3 LTR ERVL -495 59 1 7 1373 225 206 77 31 chr9 103304998 103305063 -20771109 - ORR1E LTR MaLR -23 356 289 7 1373 1018 181 217 8 chr9 103305100 103305367 -20770805 + MTD LTR MaLR 1 323 -96 7 1373 378 217 33 0 chr9 103305623 103305715 -20770457 + MTD LTR MaLR 325 419 0 7 1373 478 305 84 55 chr9 103305715 103305941 -20770231 - ORR1E LTR MaLR -132 238 8 7 1373 603 273 25 11 chr9 103306460 103306624 -20769548 + B3 SINE B2 2 171 -24 7 1373 279 0 0 0 chr9 103306624 103306655 -20769517 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1373 474 286 87 38 chr9 103306655 103306675 -20769497 + B2_Mm2 SINE B2 172 194 -1 7 1373 443 311 0 73 chr9 103306904 103307081 -20769091 - RSINE1 SINE B4 0 165 2 7 1373 928 259 35 0 chr9 103307090 103307291 -20768881 - ID_B1 SINE B4 -6 218 11 7 1373 1053 216 14 24 chr9 103307796 103308009 -20768163 + B3 SINE B2 1 211 -5 7 1373 282 279 0 12 chr9 103308047 103308127 -20768045 + ID4 SINE ID 1 79 -4 7 1373 284 123 55 0 chr9 103308320 103308393 -20767779 + (TA)n Simple_repeat Simple_repeat 2 78 0 7 1373 31 88 0 0 chr9 103308415 103308495 -20767677 + AT_rich Low_complexity Low_complexity 1 80 0 7 1373 231 320 51 70 chr9 103308552 103308710 -20767462 + HAL1b LINE L1 133 287 -1722 7 1373 259 276 102 11 chr9 103308742 103308830 -20767342 - B4 SINE B4 -5 287 192 7 1373 275 0 0 118 chr9 103308932 103309017 -20767155 + (CAAAC)n Simple_repeat Simple_repeat 1 75 0 7 1373 1739 239 61 82 chr9 103309045 103309651 -20766521 - Lx7 LINE L1 -363 7333 6741 7 1373 267 244 0 174 chr9 103309714 103309823 -20766349 - B1F1 SINE Alu -46 103 14 7 1373 585 213 56 89 chr9 103309732 103309912 -20766260 - B4A SINE B4 -118 174 1 7 1373 885 129 56 21 chr9 103309962 103310104 -20766068 + B1_Mur3 SINE Alu 3 149 0 7 1373 208 164 15 15 chr9 103310151 103310219 -20765953 + A-rich Low_complexity Low_complexity 2 69 0 7 1373 405 0 0 0 chr9 103310285 103310330 -20765842 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1373 21 0 0 0 chr9 103310512 103310533 -20765639 + AT_rich Low_complexity Low_complexity 1 21 0 7 1373 377 300 253 16 chr9 103310620 103310877 -20765295 + HAL1b LINE L1 621 938 -1071 7 1373 241 181 27 27 chr9 103310934 103311008 -20765164 + CT-rich Low_complexity Low_complexity 6 79 0 7 1373 1656 231 93 47 chr9 103311008 103311457 -20764715 - Lx8 LINE L1 -438 7035 6566 7 1373 234 150 0 0 chr9 103311467 103311507 -20764665 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 7 1373 753 221 135 10 chr9 103312159 103312351 -20763821 + B3 SINE B2 1 216 0 7 1373 384 168 92 73 chr9 103312354 103312463 -20763709 - B3 SINE B2 0 216 106 7 1373 240 204 0 69 chr9 103312479 103312537 -20763635 - B3A SINE B2 -142 56 3 7 1373 205 237 0 0 chr9 103312540 103312578 -20763594 + C-rich Low_complexity Low_complexity 3 40 0 7 1373 360 0 0 0 chr9 103312583 103312623 -20763549 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1373 853 228 94 0 chr9 103312834 103313014 -20763158 - ID_B1 SINE B4 -20 204 8 7 1373 29 28 0 0 chr9 103313143 103313179 -20762993 + AT_rich Low_complexity Low_complexity 1 36 0 7 1373 36 0 0 0 chr9 103313214 103313250 -20762922 + AT_rich Low_complexity Low_complexity 1 36 0 7 1373 913 230 33 9 chr9 103313266 103313477 -20762695 - B3 SINE B2 0 216 1 7 1373 995 32 0 0 chr9 103313683 103313806 -20762366 - B1_Mus2 SINE Alu -23 124 2 7 1373 562 135 19 0 chr9 103313872 103313976 -20762196 + CT-rich Low_complexity Low_complexity 4 109 0 7 1373 269 329 0 12 chr9 103314123 103314209 -20761963 - B3A SINE B2 0 198 114 7 1373 392 218 26 43 chr9 103314309 103314424 -20761748 - RMER15 LTR ERVL -92 483 371 7 1373 538 327 55 0 chr9 103314420 103314585 -20761587 - B4A SINE B4 -80 212 39 7 1373 386 252 0 42 chr9 103314706 103314826 -20761346 - L1MC4 LINE L1 0 8042 7928 7 1373 327 306 77 59 chr9 103315172 103315342 -20760830 + L1MC4 LINE L1 7061 7233 -809 7 1373 301 43 43 0 chr9 103315482 103315529 -20760643 + (CAA)n Simple_repeat Simple_repeat 3 51 0 7 1373 589 299 107 56 chr9 103315531 103315716 -20760456 + B4 SINE B4 66 271 -21 7 1373 423 38 0 0 chr9 103315716 103315769 -20760403 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1373 589 299 107 56 chr9 103315769 103315799 -20760373 + B4 SINE B4 272 292 0 7 1373 333 297 154 54 chr9 103315886 103316146 -20760026 + L1MC4 LINE L1 7266 7551 -491 7 1373 226 283 76 42 chr9 103316168 103316286 -20759886 + MLT1A LTR MaLR 31 152 -222 7 1373 203 361 8 56 chr9 103316365 103316491 -20759681 + L3 LINE CR1 4145 4264 -225 7 1373 21 36 0 0 chr9 103317287 103317315 -20758857 + AT_rich Low_complexity Low_complexity 1 28 0 7 1373 571 225 76 38 chr9 103317318 103317475 -20758697 - RSINE1 SINE B4 0 165 3 7 1373 184 59 59 0 chr9 103317480 103317514 -20758658 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 7 1373 573 286 2 51 chr9 103317599 103317673 -20758499 - ID_B1 SINE B4 -67 225 158 7 1373 2056 126 69 17 chr9 103317673 103318021 -20758151 + ORR1B2 LTR MaLR 1 366 -1 7 1373 573 290 4 57 chr9 103318021 103318114 -20758058 - ID_B1 SINE B4 -127 165 72 7 1373 735 44 0 0 chr9 103318141 103318232 -20757940 + (TTC)n Simple_repeat Simple_repeat 3 93 0 7 1373 1305 231 147 17 chr9 103318296 103318644 -20757528 + MTD LTR MaLR 1 393 -26 7 1373 411 88 368 38 chr9 103318636 103318742 -20757430 - B2_Mm2 SINE B2 -5 190 50 7 1373 214 138 77 0 chr9 103318744 103318809 -20757363 + (CTCTG)n Simple_repeat Simple_repeat 1 70 0 7 1373 1286 102 11 0 chr9 103318813 103318990 -20757182 - B2_Mm1t SINE B2 -14 179 1 7 1373 297 73 24 0 chr9 103318990 103319031 -20757141 + MTD LTR MaLR 375 416 -3 7 1373 714 259 9 92 chr9 103319183 103319400 -20756772 - RMER30 DNA MER1_type -3 199 1 7 1373 2079 151 72 62 chr9 103319424 103319463 -20756709 - RMER16 LTR ERVK 0 533 492 7 1373 549 30 0 0 chr9 103319463 103319530 -20756642 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 1373 2079 151 72 62 chr9 103319530 103319734 -20756438 - RMER16 LTR ERVK -42 491 277 7 1373 1520 63 5 0 chr9 103319734 103319924 -20756248 - B2_Mm1t SINE B2 -1 192 2 7 1373 2079 158 65 56 chr9 103319924 103320120 -20756052 - RMER16 LTR ERVK -257 276 1 7 1373 6383 105 11 115 chr9 103320138 103321410 -20754762 + ORR1B1-int LTR MaLR 8 1963 0 7 1373 362 229 0 12 chr9 103321414 103321498 -20754674 + Charlie5 DNA MER1_type 2114 2196 -428 7 1373 669 269 31 17 chr9 103321514 103321706 -20754466 - B3A SINE B2 0 216 27 7 1373 1275 34 0 0 chr9 103321723 103321870 -20754302 - B1_Mm SINE Alu 0 147 1 7 1373 246 225 0 0 chr9 103321870 103321910 -20754262 - B3 SINE B2 -174 42 3 7 1373 935 325 61 33 chr9 103321910 103322336 -20753836 + Charlie5 DNA MER1_type 2187 2624 0 7 1373 555 154 38 13 chr9 103322847 103323091 -20753081 + (CA)n Simple_repeat Simple_repeat 1 250 0 7 1373 348 24 0 0 chr9 103323117 103323158 -20753014 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1373 981 160 50 10 chr9 103323716 103323918 -20752254 + URR1B DNA MER1_type 16 225 0 7 1373 280 175 193 0 chr9 103323937 103323994 -20752178 - B3A SINE B2 -130 68 1 7 1373 526 209 47 19 chr9 103324083 103324190 -20751982 + ID_B1 SINE B4 81 190 -34 7 1373 720 217 0 14 chr9 103324244 103324389 -20751783 + B1_Mur1 SINE Alu 7 149 0 7 1373 346 237 70 30 chr9 103324398 103324498 -20751674 - MER53 DNA hAT -86 107 4 7 1373 762 197 25 6 chr9 103324554 103324712 -20751460 + RSINE1 SINE B4 3 163 -2 7 1373 459 92 0 0 chr9 103325124 103325189 -20750983 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1373 279 0 0 0 chr9 103325687 103325718 -20750454 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1373 820 169 7 39 chr9 103326151 103326305 -20749867 - B1_Mur3 SINE Alu 0 149 1 7 1373 306 0 0 0 chr9 103326811 103326845 -20749327 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1373 477 0 0 0 chr9 103326847 103326900 -20749272 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1373 259 282 83 14 chr9 103327066 103327138 -20749034 + ID4_ SINE ID 7 83 0 7 1373 218 317 84 12 chr9 103327567 103327650 -20748522 + MIRb SINE MIR 24 112 -156 7 1373 201 308 41 49 chr9 103328034 103328157 -20748015 + MIR3 SINE MIR 56 177 -31 7 1373 702 204 144 6 chr9 103328448 103328621 -20747551 + B3 SINE B2 20 216 0 7 1373 388 254 48 48 chr9 103328701 103328825 -20747347 - ID_B1 SINE B4 -100 124 1 7 1373 201 300 61 35 chr9 103329744 103329858 -20746314 + L2b LINE L2 2744 2860 -559 7 1373 652 157 115 8 chr9 103330008 103330130 -20746042 - B1_Mur4 SINE Alu -5 145 11 7 1373 309 355 119 61 chr9 103330140 103330452 -20745720 + L2b LINE L2 3045 3374 -1 7 1373 1034 183 56 0 chr9 103330675 103330872 -20745300 - B3 SINE B2 -6 210 3 7 1373 180 0 0 0 chr9 103330883 103330903 -20745269 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 7 1373 1117 79 0 0 chr9 103330905 103331045 -20745127 - B1_Mm SINE Alu -6 141 2 7 1373 665 241 50 70 chr9 103331048 103331249 -20744923 - B3A SINE B2 -1 197 1 7 1373 907 146 7 14 chr9 103331268 103331407 -20744765 - B1_Mur2 SINE Alu 0 149 12 7 1373 270 0 0 0 chr9 103331627 103331657 -20744515 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1373 960 26 0 8 chr9 103332342 103332460 -20743712 - B1_Mus2 SINE Alu -9 138 22 7 1373 320 290 18 27 chr9 103332817 103332927 -20743245 - MIRb SINE MIR -8 260 152 7 1373 258 309 100 83 chr9 103332931 103333219 -20742953 + MLT1G1 LTR MaLR 4 287 -304 7 1373 274 330 39 10 chr9 103333294 103333398 -20742774 + MLT1G1 LTR MaLR 432 538 -41 7 1373 202 324 0 56 chr9 103333776 103333848 -20742324 + MIRm SINE MIR 194 261 -15 7 1373 473 297 115 47 chr9 103334004 103334325 -20741847 - MER2 DNA MER2_type -1 344 2 7 1373 695 303 113 65 chr9 103334404 103334775 -20741397 - LTR16A1 LTR ERVL -2 454 66 8 1373 282 228 18 0 chr9 103335344 103335401 -20740771 + ID4_ SINE ID 9 66 -17 8 1373 263 268 14 0 chr9 103335401 103335415 -20740757 + tRNA-Ala-GCY_ tRNA tRNA 3 74 -1 8 1373 257 298 11 0 chr9 103335832 103335926 -20740246 - L1MC LINE L1 -2072 5810 5716 8 1373 314 210 86 0 chr9 103336022 103336103 -20740069 - PB1D10 SINE Alu -13 104 17 8 1373 847 276 35 0 chr9 103336180 103336379 -20739793 - B3 SINE B2 -10 206 1 8 1373 21 0 0 0 chr9 103336423 103336444 -20739728 + AT_rich Low_complexity Low_complexity 1 21 0 8 1373 497 254 93 7 chr9 103336512 103336651 -20739521 - RSINE1 SINE B4 -13 152 2 8 1373 1074 203 33 19 chr9 103337012 103337223 -20738949 + B3 SINE B2 1 214 -2 8 1373 1230 35 0 0 chr9 103337231 103337372 -20738800 + B1_Mm SINE Alu 1 141 -6 8 1373 243 0 0 0 chr9 103337375 103337402 -20738770 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1373 610 221 49 42 chr9 103337429 103337571 -20738601 + B1_Mur1 SINE Alu 1 143 -6 8 1373 399 89 0 0 chr9 103337575 103337631 -20738541 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1373 512 189 21 0 chr9 103337640 103337735 -20738437 + B4A SINE B4 196 292 0 8 1373 192 200 0 0 chr9 103337736 103337776 -20738396 + (CATA)n Simple_repeat Simple_repeat 4 43 0 8 1373 1487 147 0 9 chr9 103338301 103338528 -20737644 + URR1B DNA MER1_type 1 225 0 8 1373 525 254 12 35 chr9 103338692 103338852 -20737320 + ID_B1 SINE B4 86 243 -49 8 1373 268 304 78 9 chr9 103338858 103338974 -20737198 + MIR SINE MIR 41 164 -98 8 1373 342 0 0 0 chr9 103340445 103340483 -20735689 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1373 496 270 52 3 chr9 103340494 103340628 -20735544 - PB1D7 SINE Alu -12 137 1 8 1373 468 0 0 0 chr9 103341163 103341215 -20734957 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1373 788 224 83 0 chr9 103341725 103341917 -20734255 - B3 SINE B2 -8 208 1 8 1373 2446 109 16 142 chr9 103341975 103342054 -20734118 + RMER4A LTR ERVK 7 57 -409 8 1373 1187 75 0 0 chr9 103342054 103342200 -20733972 + B1_Mus1 SINE Alu 2 147 -1 8 1373 2446 109 16 142 chr9 103342200 103342634 -20733538 + RMER4A LTR ERVK 58 455 -11 8 1373 209 256 0 0 chr9 103342748 103342791 -20733381 + C-rich Low_complexity Low_complexity 2 44 0 8 1373 283 226 46 35 chr9 103342829 103342916 -20733256 + ORR1E LTR MaLR 4 91 -268 8 1373 354 306 25 93 chr9 103343061 103343223 -20732949 + MER21B LTR ERV1 2 152 -711 8 1373 1089 312 108 39 chr9 103343359 103343896 -20732276 + MER21B LTR ERV1 178 751 -112 8 1373 444 208 0 0 chr9 103343925 103344021 -20732151 + (TG)n Simple_repeat Simple_repeat 2 97 0 8 1373 575 196 0 0 chr9 103344022 103344124 -20732048 + PB1D10 SINE Alu 6 107 -10 8 1373 723 246 48 115 chr9 103344575 103344888 -20731284 + B4 SINE B4 1 292 0 8 1373 297 364 0 0 chr9 103344899 103345009 -20731163 + (CA)n Simple_repeat Simple_repeat 2 111 0 8 1373 213 239 0 67 chr9 103345016 103345195 -20730977 + (CATA)n Simple_repeat Simple_repeat 3 169 0 8 1373 383 245 7 0 chr9 103345161 103345308 -20730864 + (CA)n Simple_repeat Simple_repeat 2 149 0 8 1373 234 0 0 0 chr9 103345350 103345376 -20730796 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1373 370 223 12 6 chr9 103345649 103345747 -20730425 + LTR16C LTR ERVL 420 537 -1 8 1373 1784 213 106 24 chr9 103346469 103346883 -20729289 - Lx6 LINE L1 0 7460 7013 8 1373 412 281 0 0 chr9 103346883 103346979 -20729193 + PB1D10 SINE Alu 17 112 -5 8 1373 529 232 0 164 chr9 103346989 103347064 -20729108 + ID_B1 SINE B4 86 145 -79 8 1373 919 256 15 0 chr9 103347064 103347267 -20728905 + B3 SINE B2 5 210 -6 8 1373 529 232 0 164 chr9 103347267 103347356 -20728816 + ID_B1 SINE B4 146 223 -1 8 1373 204 217 0 0 chr9 103347372 103347418 -20728754 + GA-rich Low_complexity Low_complexity 3 48 0 8 1373 341 255 84 91 chr9 103347421 103347592 -20728580 + MIR3 SINE MIR 11 173 -35 8 1373 6250 136 25 24 chr9 103347906 103347988 -20728184 + L1_Mur2 LINE L1 4348 4429 -1448 8 1373 1151 82 7 0 chr9 103347988 103348135 -20728037 + B1_Mus1 SINE Alu 1 148 0 8 1373 6250 136 25 24 chr9 103348135 103349109 -20727063 + L1_Mur2 LINE L1 4430 5405 -472 8 1373 288 0 0 0 chr9 103349132 103349164 -20727008 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1373 748 214 6 43 chr9 103349174 103349335 -20726837 - B3A SINE B2 -42 156 2 8 1373 23 0 0 0 chr9 103349342 103349365 -20726807 + AT_rich Low_complexity Low_complexity 1 23 0 8 1373 473 212 23 64 chr9 103349881 103350006 -20726166 - B1_Mur2 SINE Alu -2 147 18 8 1373 441 298 23 31 chr9 103350005 103350133 -20726039 + MER58B DNA MER1_type 181 307 -34 8 1373 459 0 0 0 chr9 103350367 103350418 -20725754 + (TC)n Simple_repeat Simple_repeat 1 51 0 8 1373 327 25 0 0 chr9 103350418 103350457 -20725715 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1373 729 0 0 0 chr9 103351132 103351213 -20724959 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 8 1373 231 281 87 9 chr9 103351834 103351949 -20724223 + MER102c DNA MER1_type 203 326 -5 8 1373 2765 62 143 141 chr9 103353002 103353513 -20722659 - RLTR1B LTR ERV1 0 512 1 8 1373 351 44 0 0 chr9 103353681 103353726 -20722446 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1373 1993 171 49 21 chr9 103354088 103354517 -20721655 + BGLII_B LTR ERVK 1 441 0 8 1373 471 267 53 15 chr9 103354545 103354564 -20721608 + B1F SINE Alu 1 138 -11 8 1373 543 254 9 0 chr9 103354564 103354678 -20721494 + ID_B1 SINE B4 99 213 -11 8 1373 428 0 19 0 chr9 103354678 103354730 -20721442 + (CAA)n Simple_repeat Simple_repeat 2 54 0 8 1373 581 280 68 0 chr9 103354766 103354898 -20721274 + RSINE1 SINE B4 3 143 -22 8 1373 438 53 0 0 chr9 103354901 103354958 -20721214 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1373 1133 101 13 0 chr9 103354983 103355141 -20721031 + B2_Mm2 SINE B2 2 161 -34 8 1373 414 0 0 0 chr9 103355141 103355187 -20720985 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 8 1373 1246 35 7 0 chr9 103355679 103355823 -20720349 + B1_Mm SINE Alu 2 146 -1 8 1373 351 65 0 0 chr9 103355949 103355995 -20720177 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1373 804 264 45 15 chr9 103356081 103356281 -20719891 + B3 SINE B2 1 206 -10 8 1373 400 194 61 10 chr9 103356401 103356500 -20719672 - L1MA7 LINE L1 0 6291 6188 8 1373 843 214 55 0 chr9 103356501 103356702 -20719470 + L1M2 LINE L1 5392 5603 -697 8 1373 183 42 0 0 chr9 103356711 103356735 -20719437 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1373 1221 56 0 0 chr9 103356735 103356879 -20719293 + B1_Mus2 SINE Alu 4 147 0 8 1373 382 207 122 0 chr9 103357291 103357373 -20718799 - 5S rRNA rRNA -27 94 3 8 1373 375 200 21 21 chr9 103357375 103357472 -20718700 + Lx4B LINE L1 6946 7042 -16 8 1373 285 98 0 0 chr9 103357472 103357513 -20718659 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 8 1373 553 235 44 1 chr9 103357530 103357665 -20718507 + B3A SINE B2 29 168 -48 8 1373 300 53 0 0 chr9 103357669 103357707 -20718465 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1373 263 292 46 0 chr9 103357845 103357910 -20718262 - BC1_Mm scRNA scRNA -67 85 18 8 1373 316 311 15 29 chr9 103357935 103358071 -20718101 - ID_B1 SINE B4 -3 221 88 8 1373 859 142 21 7 chr9 103358084 103358226 -20717946 - B1F SINE Alu -5 144 1 8 1373 344 251 2 31 chr9 103358366 103358462 -20717710 - RSINE1 SINE B4 -200 92 3 8 1373 393 215 0 37 chr9 103358462 103358544 -20717628 - B1F SINE Alu -1 148 70 8 1373 296 284 11 43 chr9 103358466 103358558 -20717614 - ID_B1 SINE B4 -2 222 134 8 1373 528 238 0 0 chr9 103358701 103358869 -20717303 + (TG)n Simple_repeat Simple_repeat 2 169 0 8 1373 465 254 0 0 chr9 103358900 103359073 -20717099 + (TG)n Simple_repeat Simple_repeat 2 174 0 8 1373 573 231 0 0 chr9 103359124 103359297 -20716875 + (TG)n Simple_repeat Simple_repeat 2 174 0 8 1373 358 239 19 15 chr9 103359308 103359574 -20716598 + (TG)n Simple_repeat Simple_repeat 1 267 0 8 1373 404 254 6 0 chr9 103359614 103359791 -20716381 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1373 29 0 0 0 chr9 103359905 103359934 -20716238 + AT_rich Low_complexity Low_complexity 1 29 0 8 1373 194 30 0 83 chr9 103360517 103360537 -20715635 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1373 1183 75 0 0 chr9 103360537 103360684 -20715488 + B1_Mus1 SINE Alu 1 147 -1 8 1373 194 30 0 83 chr9 103360684 103360699 -20715473 + (A)n Simple_repeat Simple_repeat 1 13 0 8 1373 1153 263 109 5 chr9 103360864 103361231 -20714941 + MER63B DNA AcHobo 9 413 -23 8 1373 233 275 50 13 chr9 103361313 103361423 -20714749 - MIRb SINE MIR -56 152 46 8 1373 507 118 0 0 chr9 103361444 103361529 -20714643 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 1373 456 213 0 0 chr9 103361571 103361693 -20714479 + (TG)n Simple_repeat Simple_repeat 1 122 0 8 1373 578 296 56 98 chr9 103362454 103362813 -20713359 + ORR1E LTR MaLR 1 344 -15 8 1373 258 311 197 0 chr9 103363155 103363277 -20712895 + MER5A DNA MER1_type 2 147 -42 8 1373 183 80 0 0 chr9 103363390 103363415 -20712757 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1373 585 0 0 0 chr9 103364465 103364530 -20711642 + (TC)n Simple_repeat Simple_repeat 2 66 0 8 1373 195 42 0 0 chr9 103364530 103364553 -20711619 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1373 429 174 14 0 chr9 103364553 103364622 -20711550 - ID4_ SINE ID -13 70 1 8 1373 468 0 0 0 chr9 103364623 103364675 -20711497 + (CTG)n Simple_repeat Simple_repeat 2 53 0 8 1373 926 123 12 12 chr9 103364673 103364846 -20711326 + (TTC)n Simple_repeat Simple_repeat 3 175 0 8 1373 303 281 0 0 chr9 103364848 103364969 -20711203 + CT-rich Low_complexity Low_complexity 2 122 0 8 1373 352 200 80 0 chr9 103365740 103365815 -20710357 - PB1D9 SINE Alu -2 118 38 8 1373 643 140 0 10 chr9 103365805 103365906 -20710266 - MTC LTR MaLR -321 100 1 8 1373 497 243 5 11 chr9 103366164 103366277 -20709895 - PB1D10 SINE Alu -6 111 4 8 1373 1393 97 97 0 chr9 103366616 103366822 -20709350 - URR1A DNA MER1_type 0 226 1 8 1373 467 223 43 26 chr9 103367464 103367579 -20708593 + PB1D10 SINE Alu 1 117 0 9 1373 287 387 39 39 chr9 103368563 103368719 -20707453 - MER58A DNA MER1_type -4 220 65 9 1373 674 347 20 66 chr9 103368731 103368918 -20707254 + B4A SINE B4 2 183 -109 9 1373 1235 48 0 0 chr9 103368918 103369064 -20707108 - B1_Mus2 SINE Alu -1 146 1 9 1373 674 347 20 66 chr9 103369064 103369181 -20706991 + B4A SINE B4 184 292 0 9 1373 238 294 12 0 chr9 103369313 103369398 -20706774 + MLT2D LTR ERVL 25 110 -354 9 1373 352 305 53 8 chr9 103369411 103369543 -20706629 + B1F SINE Alu 5 142 -7 9 1373 356 247 14 0 chr9 103369549 103369622 -20706550 + ID4_ SINE ID 3 76 -7 9 1373 23 0 0 0 chr9 103369663 103369686 -20706486 + AT_rich Low_complexity Low_complexity 1 23 0 9 1373 279 321 43 29 chr9 103369686 103369824 -20706348 + MLT2D LTR ERVL 137 276 -138 9 1373 222 366 0 0 chr9 103370429 103370500 -20705672 + (TG)n Simple_repeat Simple_repeat 2 72 0 9 1373 343 321 87 92 chr9 103370503 103370594 -20705578 - B4 SINE B4 0 292 209 9 1373 180 0 0 0 chr9 103370594 103370614 -20705558 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 1373 1189 57 0 0 chr9 103370617 103370758 -20705414 - B1_Mus2 SINE Alu -5 142 2 9 1373 343 321 87 92 chr9 103370758 103370862 -20705310 - B4 SINE B4 -84 208 94 9 1373 237 350 26 88 chr9 103370862 103371088 -20705084 + B4 SINE B4 4 215 -77 9 1373 418 305 127 39 chr9 103372336 103372517 -20703655 - MIRb SINE MIR -21 247 51 9 1373 208 181 27 14 chr9 103372556 103372629 -20703543 + CT-rich Low_complexity Low_complexity 4 77 0 9 1373 23 0 0 0 chr9 103374781 103374804 -20701368 + AT_rich Low_complexity Low_complexity 1 23 0 9 1373 685 297 69 39 chr9 103374813 103375129 -20701043 + MLT1B LTR MaLR 2 333 -41 9 1373 266 309 136 32 chr9 103375936 103376090 -20700082 + RMER15 LTR ERVL 400 569 -6 9 1373 189 51 24 49 chr9 103376227 103376268 -20699904 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 9 1373 1020 130 14 0 chr9 103377194 103377340 -20698832 - B1_Mur4 SINE Alu 0 150 3 9 1373 394 241 13 0 chr9 103377350 103377429 -20698743 - BC1_Mm scRNA scRNA -59 93 14 9 1373 413 339 82 36 chr9 103378317 103378389 -20697783 + ID_B1 SINE B4 18 218 -2 9 1373 602 217 108 0 chr9 103378389 103378509 -20697663 + B1F1 SINE Alu 11 143 -6 9 1373 256 349 50 44 chr9 103380255 103380414 -20695758 - MER3 DNA MER1_type -3 206 47 9 1373 385 276 175 31 chr9 103380527 103380721 -20695451 + RMER15 LTR ERVL 339 560 -15 9 1373 230 228 0 50 chr9 103380732 103380792 -20695380 - MER3 DNA MER1_type -152 57 1 9 1373 268 215 127 0 chr9 103380802 103380881 -20695291 + MER33 DNA MER1_type 154 242 -82 9 1373 2830 52 17 59 chr9 103380958 103381364 -20694808 + MTA_Mm LTR MaLR 1 389 -7 9 1373 1251 107 147 5 chr9 103381571 103381768 -20694404 - URR1A DNA MER1_type -1 225 1 9 1373 243 0 0 0 chr9 103382790 103382817 -20693355 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 9 1373 393 268 41 0 chr9 103382861 103382958 -20693214 - ID_B1 SINE B4 -4 220 120 9 1373 336 181 66 11 chr9 103383619 103383720 -20692452 - B3 SINE B2 0 198 86 9 1373 1131 234 90 0 chr9 103384369 103384625 -20691547 - B4 SINE B4 -8 284 6 9 1373 21 0 0 0 chr9 103385394 103385415 -20690757 + AT_rich Low_complexity Low_complexity 1 21 0 9 1373 32 26 0 0 chr9 103386911 103386950 -20689222 + AT_rich Low_complexity Low_complexity 1 39 0 9 1373 274 171 33 66 chr9 103387183 103387252 -20688920 + B1F SINE Alu 49 147 -2 9 1373 213 39 0 0 chr9 103388431 103388457 -20687715 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 9 1373 197 304 150 73 chr9 103389281 103389501 -20686671 - L2b LINE L2 -2 3373 3137 9 1373 279 0 0 0 chr9 103389670 103389701 -20686471 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1373 644 292 89 31 chr9 103389727 103389918 -20686254 - B4 SINE B4 -28 264 63 9 1373 198 197 27 27 chr9 103389921 103389994 -20686178 + CT-rich Low_complexity Low_complexity 4 76 0 9 1373 523 221 42 0 chr9 103390008 103390126 -20686046 - ID_B1 SINE B4 -18 206 84 9 1373 251 332 188 5 chr9 103390186 103390404 -20685768 - L2b LINE L2 -604 2815 2558 9 1373 784 299 38 18 chr9 103391740 103391999 -20684173 - ID_B1 SINE B4 -27 265 1 9 1373 348 312 92 18 chr9 103395259 103395422 -20680750 + LTR16B LTR ERVL 289 463 0 9 1373 3754 18 28 7 chr9 103395931 103396367 -20679805 - L1Md_F2 LINE L1 -2 6580 6136 9 1373 213 39 0 0 chr9 103396413 103396439 -20679733 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1373 6435 128 112 11 chr9 103398013 103399177 -20676995 + RMER12B LTR ERVK 35 1357 -47 9 1373 192 316 0 81 chr9 103399717 103399803 -20676369 + L3 LINE CR1 4213 4291 -198 9 1373 198 0 0 0 chr9 103399824 103399846 -20676326 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1373 198 0 0 0 chr9 103399878 103399900 -20676272 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1373 252 0 0 0 chr9 103399932 103399960 -20676212 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1373 198 0 0 0 chr9 103400200 103400222 -20675950 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1373 942 35 0 0 chr9 103402997 103403112 -20673060 - B1_Mus1 SINE Alu 0 148 34 9 1373 438 285 15 47 chr9 103404645 103404802 -20671370 + MLT1B LTR MaLR 254 405 -3 9 1373 3079 20 3 6 chr9 103405616 103405963 -20670209 + ORR1A0 LTR MaLR 1 346 0 9 1373 1995 147 29 160 chr9 103406245 103406732 -20669440 + RLTR23 LTR ERV1 8 430 0 9 1373 226 245 144 31 chr9 103406815 103406912 -20669260 + RMER15 LTR ERVL 468 575 0 9 1373 267 300 44 11 chr9 103407748 103407839 -20668333 - ID_B1 SINE B4 -129 95 2 9 1373 335 286 130 20 chr9 103408236 103408336 -20667836 - PB1D10 SINE Alu -1 116 6 9 1373 1068 160 22 6 chr9 103408344 103408526 -20667646 + B2_Mm2 SINE B2 8 192 -3 9 1373 459 52 0 0 chr9 103409848 103409906 -20666266 + (GA)n Simple_repeat Simple_repeat 1 58 0 9 1373 407 259 198 51 chr9 103410357 103410651 -20665521 + MLT1G1 LTR MaLR 1 341 -238 9 1373 523 225 45 0 chr9 103411447 103411558 -20664614 + PB1D10 SINE Alu 2 117 0 9 1373 980 130 0 0 chr9 103411626 103411764 -20664408 + B1_Mus1 SINE Alu 1 138 -10 9 1373 387 268 90 18 chr9 103411827 103411994 -20664178 + L1MC3 LINE L1 7239 7417 -368 9 1373 427 217 10 42 chr9 103412014 103412110 -20664062 + RSINE1 SINE B4 3 95 -70 9 1373 1657 175 81 3 chr9 103412353 103412663 -20663509 + MTD LTR MaLR 84 417 -2 9 1373 358 258 277 46 chr9 103412909 103413104 -20663068 - B4A SINE B4 -12 280 41 9 1373 509 307 14 0 chr9 103413233 103413373 -20662799 + RSINE1 SINE B4 5 146 -19 9 1373 465 66 0 0 chr9 103413401 103413462 -20662710 + (CATA)n Simple_repeat Simple_repeat 2 62 0 9 1373 252 320 0 26 chr9 103414144 103414221 -20661951 - L2c LINE L2 -188 3199 3125 9 1373 203 262 24 0 chr9 103414576 103414618 -20661554 - MIRm SINE MIR -143 133 91 9 1373 320 267 164 12 chr9 103415338 103415505 -20660667 + MIR SINE MIR 65 266 -2 9 1374 206 32 0 31 chr9 103415939 103415971 -20660201 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 9 1374 1197 68 0 0 chr9 103415975 103416122 -20660050 - B1_Mus1 SINE Alu 0 148 2 9 1374 578 277 132 19 chr9 103416837 103417102 -20659070 + L1MA7 LINE L1 4847 5141 -1002 9 1374 1206 234 52 78 chr9 103417144 103417491 -20658681 - MTEb LTR MaLR -38 341 4 9 1374 318 148 32 138 chr9 103417492 103417539 -20658633 + L1_Rod LINE L1 5137 5175 -672 9 1374 2594 65 3 3 chr9 103417539 103417862 -20658310 + ORR1A2 LTR MaLR 5 327 0 9 1374 318 148 32 138 chr9 103417862 103417908 -20658264 + L1_Rod LINE L1 5176 5220 -627 9 1374 755 304 68 28 chr9 103418251 103418647 -20657525 + L1MA7 LINE L1 5527 5938 -353 9 1374 469 242 78 8 chr9 103419290 103419419 -20656753 + RMER15 LTR ERVL 429 566 -9 9 1374 471 255 104 7 chr9 103419620 103419774 -20656398 + RMER15-int LTR ERVL 614 782 -4217 9 1374 1213 48 0 7 chr9 103419867 103420014 -20656158 + B1_Mm SINE Alu 2 147 0 9 1374 216 0 0 0 chr9 103420014 103420038 -20656134 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1374 624 329 92 19 chr9 103420040 103420365 -20655807 + RMER15-int LTR ERVL 1291 1639 -3360 9 1374 999 323 97 5 chr9 103421304 103421749 -20654423 + RMER15-int LTR ERVL 4175 4660 -339 9 1374 7758 43 17 2 chr9 103421749 103422730 -20653442 - L1Md_F2 LINE L1 0 6582 5587 9 1374 370 333 74 39 chr9 103422753 103422939 -20653233 + Lx8 LINE L1 6776 6969 -504 9 1374 189 0 0 0 chr9 103422939 103422960 -20653212 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9 1374 370 333 74 39 chr9 103422960 103423004 -20653168 + Lx8 LINE L1 6970 7014 -459 9 1374 900 300 21 14 chr9 103423004 103423285 -20652887 + B4A SINE B4 2 284 -8 9 1374 340 233 340 7 chr9 103424077 103424224 -20651948 + MLT1G1 LTR MaLR 6 201 -378 9 1374 359 261 41 16 chr9 103424628 103424749 -20651423 - L1M5 LINE L1 -455 5724 5601 9 1374 301 310 72 72 chr9 103425195 103425320 -20650852 - MER58A DNA MER1_type -48 176 52 9 1374 231 261 22 22 chr9 103425256 103425346 -20650826 - RLTR8 LTR ERVK -150 215 126 9 1374 200 345 0 23 chr9 103425493 103425579 -20650593 + G-rich Low_complexity Low_complexity 5 88 0 9 1374 351 0 0 0 chr9 103426020 103426059 -20650113 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1374 575 313 72 24 chr9 103426108 103426473 -20649699 - Kanga1a DNA Tc2 -37 717 308 9 1374 275 265 180 41 chr9 103426549 103426671 -20649501 + B4A SINE B4 2 140 -152 9 1374 928 258 134 26 chr9 103428493 103428835 -20647337 + MTEa LTR MaLR 1 379 0 9 1374 404 211 44 0 chr9 103429159 103429249 -20646923 - U6 snRNA snRNA -13 94 1 9 1374 238 308 68 89 chr9 103429326 103429472 -20646700 + MER21B LTR ERV1 105 247 -616 9 1374 878 238 0 18 chr9 103429624 103429791 -20646381 - RSINE1 SINE B4 0 165 2 9 1374 203 184 0 0 chr9 103430074 103430112 -20646060 + T-rich Low_complexity Low_complexity 1 38 0 9 1374 630 37 0 47 chr9 103430113 103430199 -20645973 - B1_Mus2 SINE Alu -1 146 65 9 1374 437 340 63 34 chr9 103430708 103430976 -20645196 - HAL1 LINE L1 -2112 395 120 9 1374 445 236 155 14 chr9 103430976 103431118 -20645054 + ID_B1 SINE B4 55 216 -8 9 1374 447 263 19 31 chr9 103431227 103431388 -20644784 - L1_Mur3 LINE L1 -1305 4575 4417 9 1374 198 0 0 0 chr9 103431680 103431702 -20644470 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1374 547 179 161 8 chr9 103431853 103431971 -20644201 - B1F SINE Alu -11 138 3 1 1374 444 231 33 0 chr9 103432790 103432882 -20643290 - PB1D10 SINE Alu -6 111 20 1 1374 702 264 192 0 chr9 103433104 103433312 -20642860 + B4A SINE B4 1 248 -44 1 1374 342 372 64 47 chr9 103433378 103433550 -20642622 + B4 SINE B4 109 283 -9 1 1374 243 0 0 0 chr9 103433595 103433622 -20642550 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1374 381 172 0 0 chr9 103433622 103433680 -20642492 + B4A SINE B4 220 277 -15 1 1374 521 299 44 0 chr9 103433775 103433912 -20642260 - ID_B1 SINE B4 -3 221 79 1 1374 1452 187 230 30 chr9 103434149 103434584 -20641588 + RMER4B LTR ERVK 55 576 -9 1 1374 281 325 106 0 chr9 103434603 103434726 -20641446 + L2a LINE L2 3289 3424 -2 1 1374 548 235 0 10 chr9 103434906 103435009 -20641163 - PB1D10 SINE Alu -13 104 3 1 1374 2161 177 12 45 chr9 103435169 103435595 -20640577 + MTC LTR MaLR 1 412 -9 1 1374 297 0 0 0 chr9 103435601 103435634 -20640538 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1374 319 56 37 0 chr9 103435929 103435983 -20640189 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1374 391 300 92 0 chr9 103436685 103436805 -20639367 + MER3 DNA MER1_type 7 137 -72 1 1374 713 286 145 0 chr9 103436828 103437083 -20639089 - B4 SINE B4 0 292 1 1 1374 378 0 0 0 chr9 103438111 103438153 -20638019 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1374 234 225 30 101 chr9 103438457 103438556 -20637616 + RMER10A LTR ERVL 1 92 -350 1 1374 503 251 163 44 chr9 103438679 103439017 -20637155 + RMER10A LTR ERVL 65 442 0 1 1374 660 228 67 27 chr9 103439389 103439538 -20636634 - RSINE1 SINE B4 -8 157 3 1 1374 26 30 0 0 chr9 103439540 103439573 -20636599 + AT_rich Low_complexity Low_complexity 1 33 0 1 1374 1076 83 7 14 chr9 103439813 103439960 -20636212 - B1_Mm SINE Alu 0 147 2 1 1374 213 308 16 24 chr9 103440318 103440441 -20635731 + CT-rich Low_complexity Low_complexity 2 123 0 1 1374 256 24 24 24 chr9 103441048 103441090 -20635082 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 1 1374 338 288 119 61 chr9 103441198 103441355 -20634817 + B4A SINE B4 3 162 -62 1 1374 220 211 9 63 chr9 103441374 103441383 -20634789 + (CATA)n Simple_repeat Simple_repeat 2 10 0 1 1374 593 82 18 18 chr9 103441383 103441495 -20634677 + (CA)n Simple_repeat Simple_repeat 2 113 0 1 1374 220 211 9 63 chr9 103441495 103441596 -20634576 + (CATA)n Simple_repeat Simple_repeat 3 98 0 1 1374 341 149 25 34 chr9 103441609 103441727 -20634445 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 1374 250 152 12 60 chr9 103441727 103441811 -20634361 + (CATA)n Simple_repeat Simple_repeat 4 83 0 1 1374 480 50 25 12 chr9 103441814 103441895 -20634277 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1374 1776 244 147 35 chr9 103441898 103442590 -20633582 + RMER13A LTR ERVK 1 808 -52 1 1374 25 0 0 0 chr9 103443554 103443579 -20632593 + AT_rich Low_complexity Low_complexity 1 25 0 1 1374 238 354 12 24 chr9 103444010 103444094 -20632078 - MIRc SINE MIR -150 118 36 1 1374 235 203 40 147 chr9 103444094 103444117 -20632055 - RMER17D2 LTR ERVK -631 178 164 1 1374 513 218 40 0 chr9 103444117 103444218 -20631954 + MTE2b LTR MaLR 1 105 -274 1 1374 419 226 216 8 chr9 103444223 103444348 -20631824 + MTE2b LTR MaLR 225 375 -4 1 1374 312 91 0 0 chr9 103445244 103445288 -20630884 + (CAAT)n Simple_repeat Simple_repeat 4 47 0 1 1374 219 45 67 22 chr9 103445293 103445338 -20630834 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 1374 238 283 42 54 chr9 103445341 103445509 -20630663 - L1MC5 LINE L1 -385 7576 7411 1 1374 671 176 0 0 chr9 103446018 103446120 -20630052 + B1_Mur4 SINE Alu 1 102 -48 1 1374 409 257 0 45 chr9 103446023 103446133 -20630039 + ID_B1 SINE B4 86 190 -34 1 1374 237 65 0 0 chr9 103447729 103447760 -20628412 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1374 421 269 128 20 chr9 103448696 103448844 -20627328 - MIR SINE MIR -22 240 77 1 1374 277 274 67 19 chr9 103450475 103450579 -20625593 + L1MC4 LINE L1 7791 7899 -143 1 1374 316 265 40 10 chr9 103450614 103450713 -20625459 + L1MB1 LINE L1 5897 5998 -170 1 1374 1548 37 0 45 chr9 103452504 103452702 -20623470 + B2_Mm2 SINE B2 2 190 -5 1 1374 463 346 97 48 chr9 103453966 103454318 -20621854 + MER74B LTR ERVL 142 510 -112 1 1374 310 326 50 10 chr9 103454586 103454685 -20621487 - MER74A LTR ERVL -387 171 69 1 1374 934 300 22 7 chr9 103454743 103455015 -20621157 - B4 SINE B4 -16 276 1 1 1374 345 109 0 0 chr9 103455544 103455599 -20620573 + (CAA)n Simple_repeat Simple_repeat 1 55 0 1 1374 686 233 74 4 chr9 103455683 103455958 -20620214 + MTE2b LTR MaLR 1 366 -13 1 1374 899 175 140 6 chr9 103456859 103457037 -20619135 + B3 SINE B2 1 202 -14 1 1374 1443 199 78 36 chr9 103457257 103457665 -20618507 + MT2A LTR ERVL 4 563 -38 1 1374 188 350 73 47 chr9 103459487 103459637 -20616535 - MIR SINE MIR -64 198 45 1 1374 210 316 11 112 chr9 103461203 103461292 -20614880 - MIRm SINE MIR 0 276 197 1 1374 467 271 45 62 chr9 103462279 103462456 -20613716 - B3 SINE B2 0 216 43 1 1374 207 0 0 0 chr9 103462658 103462681 -20613491 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 1 1374 333 294 47 58 chr9 103463786 103464016 -20612156 + ORR1E LTR MaLR 17 243 -127 1 1374 959 192 62 218 chr9 103464102 103464556 -20611616 - ORR1C2 LTR MaLR -1 383 1 1 1374 571 246 29 0 chr9 103464797 103464935 -20611237 - RSINE1 SINE B4 -23 142 1 1 1374 739 309 117 17 chr9 103465132 103465431 -20610741 - MER2 DNA MER2_type -16 329 1 1 1374 270 0 0 0 chr9 103466461 103466491 -20609681 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1374 25 0 0 0 chr9 103466681 103466706 -20609466 + AT_rich Low_complexity Low_complexity 1 25 0 1 1374 293 204 37 0 chr9 103467212 103467266 -20608906 - B4A SINE B4 -185 107 52 1 1374 1014 39 8 8 chr9 103468736 103468866 -20607306 + B1_Mm SINE Alu 18 147 0 1 1374 264 111 0 0 chr9 103468872 103468917 -20607255 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1374 1051 305 30 21 chr9 103469515 103469847 -20606325 + MLT1H LTR MaLR 12 346 -203 1 1374 621 230 225 38 chr9 103469914 103470159 -20606013 + RLTR28B LTR ERVL 9 314 -167 1 1374 243 0 0 0 chr9 103470159 103470186 -20605986 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1374 621 230 50 48 chr9 103470186 103470286 -20605886 + RLTR28B LTR ERVL 315 511 -13 1 1374 1126 244 69 22 chr9 103470422 103470698 -20605474 + B4A SINE B4 2 290 -2 1 1374 630 39 0 0 chr9 103470707 103470784 -20605388 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1374 198 0 0 0 chr9 103470969 103470991 -20605181 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1374 409 311 67 56 chr9 103471199 103471468 -20604704 - ORSL-2a DNA Tip100 -10 332 61 1 1374 303 49 0 0 chr9 103473444 103473485 -20602687 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1374 729 156 8 32 chr9 103473485 103473611 -20602561 - B1_Mus2 SINE Alu -22 125 3 1 1374 597 289 113 42 chr9 103474962 103475200 -20600972 + MER46C DNA MER2_type 80 334 -4 1 1374 596 285 150 11 chr9 103475240 103475513 -20600659 + MER33 DNA MER1_type 6 316 -8 1 1374 181 283 100 0 chr9 103478344 103478404 -20597768 - L2a LINE L2 -16 3410 3345 1 1374 803 254 36 19 chr9 103478604 103478816 -20597356 - B3A SINE B2 0 216 1 1 1374 24 0 0 0 chr9 103478836 103478860 -20597312 + AT_rich Low_complexity Low_complexity 1 24 0 1 1374 387 113 0 0 chr9 103479981 103480043 -20596129 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1 1374 1045 317 158 13 chr9 103481167 103481634 -20594538 + MLT1F LTR MaLR 1 535 -13 1 1374 209 403 23 15 chr9 103482434 103482565 -20593607 - L4 LINE RTE -317 1712 1581 1 1374 918 201 12 0 chr9 103482577 103482746 -20593426 + B3A SINE B2 1 171 -27 1 1374 296 83 21 0 chr9 103482746 103482794 -20593378 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 1 1374 360 258 135 0 chr9 103482886 103482975 -20593197 + PB1D10 SINE Alu 13 113 -4 1 1374 1007 236 104 115 chr9 103484026 103484409 -20591763 + MTE2a LTR MaLR 1 379 0 1 1374 251 227 12 74 chr9 103484505 103484586 -20591586 + MER3 DNA MER1_type 133 208 -1 1 1374 267 333 104 0 chr9 103487129 103487225 -20588947 + L2a LINE L2 3303 3408 -18 1 1374 233 379 86 62 chr9 103488811 103489067 -20587105 + L2 LINE L2 2596 2857 -562 1 1374 403 269 22 65 chr9 103489083 103489222 -20586950 - MTEb LTR MaLR -14 365 233 1 1374 559 266 148 45 chr9 103490435 103490673 -20585499 - MLT1A LTR MaLR -76 298 35 1 1374 1037 155 192 6 chr9 103490673 103490855 -20585317 + B3 SINE B2 1 216 0 1 1374 25 0 0 0 chr9 103490860 103490885 -20585287 + AT_rich Low_complexity Low_complexity 1 25 0 1 1374 197 219 90 64 chr9 103491195 103491273 -20584899 + L2 LINE L2 162 241 -3178 1 1374 234 303 99 58 chr9 103492104 103492416 -20583756 - L1MEe LINE L1 -3975 879 555 1 1374 586 206 35 78 chr9 103492553 103492695 -20583477 - B1_Mur3 SINE Alu -7 142 7 1 1374 184 30 61 0 chr9 103492826 103492859 -20583313 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1374 198 0 0 0 chr9 103493909 103493931 -20582241 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1374 259 273 33 98 chr9 103494362 103494484 -20581688 + MTEa LTR MaLR 39 152 -227 1 1374 628 265 174 23 chr9 103494487 103494792 -20581380 + MT2A LTR ERVL 183 533 0 1 1374 307 342 39 32 chr9 103496175 103496329 -20579843 + RSINE1 SINE B4 3 157 -8 1 1374 233 118 19 38 chr9 103496466 103496519 -20579653 + A-rich Low_complexity Low_complexity 3 54 0 1 1374 508 262 24 8 chr9 103496562 103496689 -20579483 - B1_Mur1 SINE Alu -19 130 2 1 1374 355 240 112 28 chr9 103498220 103498327 -20577845 - PB1D10 SINE Alu -1 116 1 1 1374 205 274 0 0 chr9 103498397 103498448 -20577724 + A-rich Low_complexity Low_complexity 3 53 0 1 1374 1492 249 18 107 chr9 103498575 103498808 -20577364 + RMER20B LTR ERVK 1 218 -409 1 1374 1200 166 0 17 chr9 103498808 103499041 -20577131 + Lx LINE L1 6426 6654 0 1 1374 1492 262 30 101 chr9 103499041 103499346 -20576826 + RMER20B LTR ERVK 219 516 0 1 1374 531 47 0 0 chr9 103499346 103499410 -20576762 + ORR1B1 LTR MaLR 331 394 0 1 1374 396 317 49 0 chr9 103500543 103500666 -20575506 - ID_B1 SINE B4 -15 209 81 1 1374 198 286 17 110 chr9 103501116 103501170 -20575002 + L2c LINE L2 3272 3325 -62 2 1374 246 288 26 40 chr9 103501170 103501246 -20574926 - ID4_ SINE ID -8 75 1 3 1374 198 286 17 110 chr9 103501246 103501309 -20574863 + L2c LINE L2 3326 3378 -9 2 1374 226 307 13 26 chr9 103501322 103501347 -20574825 + B1_Mur4 SINE Alu 27 51 -99 4 1374 2297 108 16 37 chr9 103501347 103501722 -20574450 + ORR1B2 LTR MaLR 1 367 0 5 1374 226 307 13 26 chr9 103501722 103501773 -20574399 + B1_Mur4 SINE Alu 52 101 -49 4 1374 419 234 64 27 chr9 103501818 103501928 -20574244 + PB1D10 SINE Alu 1 114 -3 6 1374 1033 239 30 57 chr9 103503061 103503358 -20572814 - B4A SINE B4 0 292 4 7 1374 355 298 39 0 chr9 103503370 103503474 -20572698 + Charlie5 DNA MER1_type 2306 2413 -211 8 1374 324 102 0 0 chr9 103503484 103503533 -20572639 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1374 1128 119 0 0 chr9 103505199 103505376 -20570796 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1374 496 193 138 0 chr9 103505393 103505502 -20570670 - RSINE1 SINE B4 -39 126 3 1 1374 216 291 0 0 chr9 103505567 103505622 -20570550 + ID4_ SINE ID 28 82 -1 1 1374 274 254 15 0 chr9 103505654 103505721 -20570451 + ID4_ SINE ID 12 79 -4 1 1374 714 176 2 3 chr9 103505972 103506111 -20570061 - B1_Mus1 SINE Alu -11 138 1 1 1374 828 170 263 0 chr9 103506599 103506770 -20569402 - B3 SINE B2 0 216 1 1 1374 192 77 0 0 chr9 103508476 103508502 -20567670 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 1 1374 192 40 0 0 chr9 103508579 103508604 -20567568 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1374 778 260 84 0 chr9 103509403 103509630 -20566542 + B4A SINE B4 31 276 -16 1 1374 1368 68 23 0 chr9 103509744 103509921 -20566251 - B2_Mm2 SINE B2 -14 181 1 1 1374 378 61 0 0 chr9 103510009 103510058 -20566114 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1374 438 255 57 0 chr9 103510063 103510169 -20566003 - PB1D7 SINE Alu -6 114 3 2 1374 1541 41 0 49 chr9 103511302 103511505 -20564667 - B2_Mm1a SINE B2 0 193 1 2 1374 1305 191 0 0 chr9 103512402 103512627 -20563545 + URR1B DNA MER1_type 1 225 0 2 1374 468 220 20 20 chr9 103512763 103512865 -20563307 + PB1D10 SINE Alu 14 115 -2 2 1374 24 32 0 0 chr9 103512902 103512933 -20563239 + AT_rich Low_complexity Low_complexity 1 31 0 2 1374 1247 307 118 19 chr9 103513566 103514141 -20562031 + Lx8 LINE L1 6832 7463 -10 2 1374 245 312 138 9 chr9 103514220 103514437 -20561735 - L1MB5 LINE L1 -68 6106 5862 2 1374 752 181 6 49 chr9 103516100 103516263 -20559909 - RSINE1 SINE B4 -2 163 8 2 1374 302 151 0 0 chr9 103516474 103516527 -20559645 - URR1B DNA MER1_type -2 223 171 2 1374 1475 124 28 5 chr9 103516537 103516755 -20559417 - URR1B DNA MER1_type -2 223 1 2 1374 204 158 0 26 chr9 103516884 103516923 -20559249 + GA-rich Low_complexity Low_complexity 2 39 0 3 1374 3057 274 89 24 chr9 103517687 103519407 -20556765 + L1MA6 LINE L1 3756 5679 -505 3 1374 202 196 41 10 chr9 103519429 103519527 -20556645 + (TA)n Simple_repeat Simple_repeat 1 101 0 3 1374 398 329 135 43 chr9 103519544 103519871 -20556301 + L1MA6 LINE L1 5655 6011 -289 3 1374 1352 266 76 11 chr9 103520108 103520542 -20555630 - MER82 DNA MER2_type -191 462 1 3 1374 970 229 5 27 chr9 103521286 103521506 -20554666 + B3 SINE B2 2 216 0 3 1374 23 0 0 0 chr9 103521506 103521529 -20554643 + AT_rich Low_complexity Low_complexity 1 23 0 3 1374 263 342 12 69 chr9 103521772 103521932 -20554240 + ORR1E LTR MaLR 21 171 -188 3 1374 494 70 0 0 chr9 103522064 103522135 -20554037 + URR1B DNA MER1_type 155 225 0 2 1374 263 197 91 13 chr9 103522135 103522212 -20553960 + MTEb LTR MaLR 297 379 0 3 1374 309 125 77 77 chr9 103522378 103522456 -20553716 + MIR SINE MIR 67 144 -118 3 1374 292 287 100 8 chr9 103522761 103522891 -20553281 - Charlie8 DNA MER1_type -1884 544 403 3 1374 3104 30 0 32 chr9 103523640 103524017 -20552155 + RLTR10B2 LTR ERVK 1 365 0 4 1374 393 22 0 0 chr9 103524193 103524239 -20551933 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1374 231 179 60 0 chr9 103525339 103525406 -20550766 + (TCTG)n Simple_repeat Simple_repeat 4 74 0 4 1374 1052 236 42 28 chr9 103525407 103525695 -20550477 - B4 SINE B4 0 292 1 4 1374 328 299 133 7 chr9 103527316 103527451 -20548721 + MER5A DNA MER1_type 3 154 -35 4 1374 252 200 18 35 chr9 103527842 103527899 -20548273 - RSINE1 SINE B4 -109 56 1 4 1374 381 340 0 13 chr9 103528372 103528524 -20547648 + MER3 DNA MER1_type 5 154 -55 4 1374 332 252 173 15 chr9 103529046 103529179 -20546993 + LTR53 LTR ERVL 19 172 -347 4 1374 345 314 36 68 chr9 103529213 103529435 -20546737 + LTR53 LTR ERVL 253 467 -52 4 1374 334 344 52 21 chr9 103529522 103529715 -20546457 + LTR33B LTR ERVL 17 215 -288 4 1374 248 379 87 17 chr9 103529835 103530007 -20546165 + LTR16D2 LTR ERVL 1 184 -354 4 1374 347 296 77 16 chr9 103530112 103530320 -20545852 + LTR16D2 LTR ERVL 334 572 0 4 1374 469 260 6 6 chr9 103530483 103530653 -20545519 + (TA)n Simple_repeat Simple_repeat 1 170 0 5 1374 512 305 15 15 chr9 103532100 103532230 -20543942 + B1F1 SINE Alu 11 140 -9 5 1374 180 244 0 22 chr9 103532464 103532510 -20543662 + MIRm SINE MIR 103 147 -129 5 1374 350 176 0 12 chr9 103532748 103532834 -20543338 + CT-rich Low_complexity Low_complexity 1 85 0 5 1374 400 289 32 14 chr9 103533026 103533247 -20542925 - Lx9 LINE L1 -1 7643 7419 5 1374 1081 261 66 32 chr9 103533215 103533514 -20542658 - Lx9 LINE L1 -127 7517 7204 5 1374 2368 128 30 119 chr9 103533514 103534011 -20542161 - RLTR11B LTR ERVK 0 453 1 5 1374 1081 261 66 32 chr9 103534011 103534091 -20542081 - Lx9 LINE L1 -441 7203 7125 5 1374 458 151 118 63 chr9 103535074 103535201 -20540971 + B1_Mus1 SINE Alu 6 139 -9 5 1374 351 0 0 0 chr9 103535202 103535241 -20540931 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1374 686 157 17 9 chr9 103535533 103535649 -20540523 - PB1D9 SINE Alu -2 118 2 5 1374 5146 119 10 8 chr9 103535650 103536435 -20539737 - Lx2 LINE L1 -10 6987 6201 5 1374 451 279 16 109 chr9 103536456 103536649 -20539523 + B4A SINE B4 1 175 -117 6 1374 468 0 0 0 chr9 103536714 103536766 -20539406 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1374 198 103 0 0 chr9 103536774 103536803 -20539369 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1374 3106 264 52 15 chr9 103537299 103538187 -20537985 + RCHARR1 DNA MER1_type 50 970 -4 6 1374 283 230 91 86 chr9 103538292 103538501 -20537671 + RMER17C LTR ERVK 147 356 -54 6 1374 414 0 0 0 chr9 103538890 103538936 -20537236 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1374 288 283 123 90 chr9 103539790 103540058 -20536114 + B4 SINE B4 2 278 -14 6 1374 386 304 37 25 chr9 103540530 103540680 -20535492 + PB1D10 SINE Alu 3 148 -1 6 1374 243 0 0 0 chr9 103540764 103540791 -20535381 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1374 312 48 0 0 chr9 103540820 103540862 -20535310 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1374 197 180 0 20 chr9 103543274 103543325 -20532847 + GA-rich Low_complexity Low_complexity 5 54 0 7 1374 387 326 57 52 chr9 103543936 103544166 -20532006 - B4 SINE B4 -60 232 2 7 1374 312 316 51 28 chr9 103544807 103545022 -20531150 + ALINE LINE RTE 54 273 -344 7 1374 759 22 0 0 chr9 103545846 103545935 -20530237 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 171 758 182 7 0 chr9 103546851 103547005 -20529167 + CT-rich Low_complexity Low_complexity 2 156 0 7 1375 790 139 14 7 chr9 103547006 103547144 -20529028 - B1_Mus2 SINE Alu 0 147 9 7 1375 391 180 36 91 chr9 103547049 103547159 -20529013 - MT2B LTR ERVL -344 257 154 7 1375 232 239 161 63 chr9 103547053 103547196 -20528976 - RLTR25A LTR ERVK -531 572 416 7 1375 225 231 0 0 chr9 103548479 103548518 -20527654 + polypyrimidine Low_complexity Low_complexity 3 41 0 7 1375 1482 280 91 42 chr9 103548644 103549312 -20526860 + Lx8 LINE L1 6067 6767 -706 7 1375 384 326 7 0 chr9 103549373 103549517 -20526655 - L1MA4 LINE L1 -375 5925 5781 8 1375 611 294 195 52 chr9 103549548 103550168 -20526004 + Lx9 LINE L1 6917 7625 -19 8 1375 329 163 11 0 chr9 103550513 103550605 -20525567 + GA-rich Low_complexity Low_complexity 1 93 0 8 1375 540 0 0 0 chr9 103550605 103550665 -20525507 + (GAA)n Simple_repeat Simple_repeat 3 62 0 8 1375 297 0 0 0 chr9 103550844 103550877 -20525295 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1375 216 0 0 0 chr9 103550877 103550900 -20525272 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 1375 538 249 83 22 chr9 103552069 103552250 -20523922 + L1MA4A LINE L1 3367 3558 -2585 8 1375 513 183 105 26 chr9 103552293 103552473 -20523699 - ORR1D2 LTR MaLR -6 364 163 8 1375 295 204 8 42 chr9 103552493 103552611 -20523561 + G-rich Low_complexity Low_complexity 2 115 0 8 1375 649 246 34 40 chr9 103552614 103552808 -20523364 - ORR1D2 LTR MaLR -190 184 1 8 1375 1772 288 108 1 chr9 103552814 103553610 -20522562 + L1MA4A LINE L1 3600 4480 -1663 8 1375 465 236 6 17 chr9 103553649 103553830 -20522342 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1375 422 224 55 73 chr9 103553842 103554006 -20522166 + L1MA4A LINE L1 4534 4694 -1449 8 1375 522 277 22 0 chr9 103554027 103554164 -20522008 + RSINE1 SINE B4 15 154 -11 9 1375 357 82 0 0 chr9 103554184 103554233 -20521939 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1375 446 280 33 0 chr9 103554238 103554388 -20521784 + L1MA4A LINE L1 5312 5466 -834 8 1375 1055 236 35 8 chr9 103554393 103554653 -20521519 + ORR1D2 LTR MaLR 2 268 -102 9 1375 299 320 0 0 chr9 103554655 103554777 -20521395 + (CACCC)n Simple_repeat Simple_repeat 2 123 0 9 1375 296 141 226 72 chr9 103554777 103554879 -20521293 + ORR1D2 LTR MaLR 231 358 -12 9 1375 343 311 179 5 chr9 103555048 103555255 -20520917 + L1MA4A LINE L1 5678 5920 -383 8 1375 252 59 0 0 chr9 103556833 103556867 -20519305 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 9 1375 222 118 0 0 chr9 103557187 103557221 -20518951 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 9 1375 525 16 0 0 chr9 103557406 103557468 -20518704 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 1375 1180 243 54 11 chr9 103557477 103557756 -20518416 - B4 SINE B4 0 292 2 9 1375 21 0 0 0 chr9 103558312 103558333 -20517839 + AT_rich Low_complexity Low_complexity 1 21 0 9 1375 760 251 78 0 chr9 103562028 103562219 -20513953 - ID_B1 SINE B4 -17 207 2 9 1375 198 0 0 0 chr9 103563258 103563280 -20512892 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1375 569 231 54 7 chr9 103563297 103563445 -20512727 - MTD LTR MaLR -264 155 1 1 1375 228 149 0 0 chr9 103563767 103563814 -20512358 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1375 219 36 0 0 chr9 103564043 103564071 -20512101 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1375 4104 108 82 36 chr9 103564708 103565429 -20510743 + RMER6A LTR ERVK 3 756 0 1 1375 440 323 8 15 chr9 103565681 103565813 -20510359 - ID_B1 SINE B4 -6 218 88 1 1375 366 80 0 0 chr9 103565921 103565971 -20510201 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1375 268 288 0 24 chr9 103566635 103566717 -20509455 + MIRb SINE MIR 154 233 -35 1 1375 473 342 9 90 chr9 103568574 103568786 -20507386 - B4 SINE B4 0 292 98 1 1375 2802 227 112 67 chr9 103568823 103569924 -20506248 + RMER1B Other Other 1 1030 0 1 1375 387 223 73 64 chr9 103569947 103570057 -20506115 - B4 SINE B4 -180 112 2 1 1375 661 238 148 11 chr9 103570080 103570263 -20505909 - B3 SINE B2 -7 209 2 1 1375 504 0 0 0 chr9 103570781 103570837 -20505335 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1375 225 0 0 0 chr9 103571914 103571939 -20504233 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1375 929 236 84 19 chr9 103571973 103572236 -20503936 - B4A SINE B4 -12 280 1 1 1375 356 232 8 0 chr9 103572642 103572767 -20503405 + (CA)n Simple_repeat Simple_repeat 1 126 0 1 1375 349 273 70 8 chr9 103573417 103573546 -20502626 + ID_B1 SINE B4 84 220 -4 1 1375 1892 249 83 69 chr9 103573587 103574276 -20501896 + L1MA9 LINE L1 5376 6094 -218 1 1375 1187 240 119 15 chr9 103574276 103574619 -20501553 - MTEa LTR MaLR 0 379 1 1 1375 1892 249 83 69 chr9 103574619 103574750 -20501422 + L1MA9 LINE L1 6095 6207 -105 1 1375 21 0 0 0 chr9 103575206 103575227 -20500945 + AT_rich Low_complexity Low_complexity 1 21 0 1 1375 441 0 0 0 chr9 103576028 103576077 -20500095 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1375 348 24 0 0 chr9 103576077 103576117 -20500055 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1375 242 346 8 16 chr9 103576129 103576258 -20499914 + (TG)n Simple_repeat Simple_repeat 1 128 0 1 1375 219 274 0 61 chr9 103576387 103576453 -20499719 - B4A SINE B4 -226 66 5 1 1375 422 283 0 0 chr9 103576482 103576595 -20499577 - B1F1 SINE Alu -24 125 13 1 1375 877 286 181 62 chr9 103576729 103577317 -20498855 - L1MD3 LINE L1 -173 7822 7106 1 1375 942 173 93 88 chr9 103577317 103577532 -20498640 + B3 SINE B2 1 216 0 1 1375 877 286 181 62 chr9 103577532 103577931 -20498241 - L1MD3 LINE L1 -890 7105 6717 1 1375 1229 145 19 5 chr9 103578073 103578288 -20497884 + URR1A DNA MER1_type 9 226 0 1 1375 535 254 66 8 chr9 103579615 103579838 -20496334 - B4A SINE B4 -12 280 2 1 1375 414 0 0 0 chr9 103582000 103582046 -20494126 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1375 306 182 0 0 chr9 103582046 103582112 -20494060 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1375 803 122 0 8 chr9 103582341 103582473 -20493699 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1 1375 229 83 154 77 chr9 103583185 103583237 -20492935 - B2_Mm2 SINE B2 -113 82 27 1 1375 547 330 15 23 chr9 103583295 103583506 -20492666 + ID_B1 SINE B4 24 219 -5 1 1375 1043 320 125 37 chr9 103583781 103584430 -20491742 - MER21B LTR ERV1 -115 748 43 1 1375 627 291 66 0 chr9 103584759 103584941 -20491231 - B3A SINE B2 -3 195 2 1 1375 369 265 141 36 chr9 103585103 103585341 -20490831 + L1MA9 LINE L1 5761 6016 -275 1 1375 938 253 96 0 chr9 103585434 103585726 -20490446 + L1MA8 LINE L1 5970 6289 -2 1 1375 993 81 13 7 chr9 103585823 103585972 -20490200 + ORR1B2 LTR MaLR 218 367 0 1 1375 254 320 40 0 chr9 103585976 103586051 -20490121 - PB1D7 SINE Alu -42 78 1 1 1375 1064 228 96 21 chr9 103586292 103586624 -20489548 - ORR1E LTR MaLR -2 357 1 1 1375 251 71 24 0 chr9 103586638 103586680 -20489492 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1375 213 94 0 0 chr9 103586696 103586728 -20489444 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1375 2240 119 70 3 chr9 103586840 103587209 -20488963 - ORR1B1 LTR MaLR 0 394 1 1 1375 21 36 0 0 chr9 103587804 103587832 -20488340 + AT_rich Low_complexity Low_complexity 1 28 0 1 1375 230 323 41 10 chr9 103589832 103589929 -20486243 + MLT1G1 LTR MaLR 79 178 -417 1 1375 382 289 33 26 chr9 103590132 103590285 -20485887 + MLT1G1 LTR MaLR 426 579 0 1 1375 411 290 153 6 chr9 103590746 103590909 -20485263 + MIRb SINE MIR 64 250 -18 1 1375 580 311 42 57 chr9 103591181 103591512 -20484660 - Lx8 LINE L1 0 7473 7148 1 1375 333 255 130 19 chr9 103591590 103591698 -20484474 - PB1D7 SINE Alu 0 120 1 1 1375 452 239 104 0 chr9 103593800 103593934 -20482238 + B1F1 SINE Alu 1 148 -1 1 1375 229 333 14 0 chr9 103593949 103594021 -20482151 + ID2 SINE ID 3 75 -8 1 1375 345 24 0 0 chr9 103595812 103595854 -20480318 + (CATA)n Simple_repeat Simple_repeat 4 45 0 1 1375 484 310 40 12 chr9 103596970 103597182 -20478990 + L1M5 LINE L1 5449 5664 -2218 1 1375 1705 119 1 26 chr9 103598030 103598363 -20477809 - RLTR1C LTR ERV1 -2 603 209 1 1375 378 0 0 0 chr9 103598713 103598755 -20477417 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1375 316 325 129 27 chr9 103599031 103599287 -20476885 - MamRep434 DNA TcMar -35 391 110 1 1375 258 297 33 0 chr9 103599967 103600058 -20476114 - B4 SINE B4 -99 193 100 1 1375 215 229 13 79 chr9 103600145 103600221 -20475951 - B4 SINE B4 -221 71 1 1 1375 279 0 0 0 chr9 103600303 103600334 -20475838 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1375 853 122 8 0 chr9 103601126 103601257 -20474915 - B1_Mur4 SINE Alu -8 142 11 1 1375 320 250 71 0 chr9 103602405 103602489 -20473683 - PB1D7 SINE Alu -7 113 24 1 1375 357 82 0 0 chr9 103602490 103602539 -20473633 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1375 269 219 0 15 chr9 103602571 103602636 -20473536 - L1M LINE L1 -816 5378 5315 1 1375 234 0 0 0 chr9 103602968 103602994 -20473178 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1375 369 0 0 0 chr9 103602994 103603034 -20473138 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1375 288 0 0 0 chr9 103603075 103603107 -20473065 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1375 246 326 83 58 chr9 103603233 103603438 -20472734 + MIR SINE MIR 20 229 -33 1 1375 29 0 0 0 chr9 103604315 103604344 -20471828 + AT_rich Low_complexity Low_complexity 1 29 0 1 1375 428 235 19 10 chr9 103604414 103604517 -20471655 - PB1D10 SINE Alu -9 108 5 1 1375 266 320 112 10 chr9 103604561 103604766 -20471406 + Tigger9b DNA MER2_type 261 486 -138 1 1375 518 273 23 68 chr9 103604891 103605068 -20471104 - B3 SINE B2 0 216 48 1 1375 239 173 0 19 chr9 103605073 103605126 -20471046 + CT-rich Low_complexity Low_complexity 3 54 0 1 1375 892 292 16 0 chr9 103605583 103605840 -20470332 + RCHARR1 DNA MER1_type 75 335 -639 1 1375 1473 196 78 38 chr9 103605845 103606242 -20469930 + MTC LTR MaLR 5 417 -4 1 1375 230 206 57 29 chr9 103606247 103606317 -20469855 + RCHARR1 DNA MER1_type 394 465 -509 1 1375 351 258 26 36 chr9 103606289 103606437 -20469735 - B4A SINE B4 -147 145 1 1 1375 946 137 66 33 chr9 103606437 103606677 -20469495 + RCHARR1 DNA MER1_type 726 973 -1 1 1375 250 303 91 9 chr9 103607003 103607113 -20469059 + MIRb SINE MIR 33 151 -117 1 1375 256 327 29 29 chr9 103607501 103607605 -20468567 + MER5A DNA MER1_type 12 115 -74 1 1375 206 118 0 0 chr9 103608116 103608150 -20468022 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1375 605 230 6 106 chr9 103608194 103608374 -20467798 - B3A SINE B2 -36 162 1 1 1375 261 270 45 91 chr9 103609982 103610092 -20466080 - PB1D7 SINE Alu -15 105 1 1 1375 301 361 33 5 chr9 103610522 103610706 -20465466 - MLT1F1 LTR MaLR 0 569 381 1 1375 580 255 57 0 chr9 103611756 103611897 -20464275 - RSINE1 SINE B4 -13 152 4 1 1375 249 33 0 0 chr9 103611916 103611946 -20464226 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1375 488 332 52 65 chr9 103611990 103612315 -20463857 + MLT1E2 LTR MaLR 79 399 -228 1 1375 283 165 0 40 chr9 103612467 103612568 -20463604 + (CAGAGA)n Simple_repeat Simple_repeat 2 98 0 1 1375 593 185 0 6 chr9 103612546 103612725 -20463447 + GA-rich Low_complexity Low_complexity 1 178 0 1 1375 574 274 110 105 chr9 103613300 103613663 -20462509 + Lx8 LINE L1 7108 7472 -1 1 1375 198 0 0 0 chr9 103614863 103614885 -20461287 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1375 658 295 35 0 chr9 103615390 103615563 -20460609 + ID_B1 SINE B4 3 181 -43 1 1375 229 372 58 97 chr9 103615985 103616026 -20460146 + MLT1A LTR MaLR 15 56 -309 1 1375 231 36 0 0 chr9 103616026 103616054 -20460118 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1375 267 312 111 117 chr9 103616054 103616354 -20459818 + MLT1A LTR MaLR 57 352 -22 1 1375 319 261 68 25 chr9 103617090 103617208 -20458964 + L1MD3 LINE L1 6823 6945 -1050 1 1375 273 57 0 0 chr9 103617231 103617266 -20458906 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 1 1375 209 72 17 67 chr9 103617314 103617374 -20458798 + A-rich Low_complexity Low_complexity 2 58 0 1 1375 190 408 20 20 chr9 103618042 103618142 -20458030 + MIR SINE MIR 162 261 -1 1 1375 396 155 0 0 chr9 103618342 103618413 -20457759 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1375 320 0 71 18 chr9 103619264 103619320 -20456852 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 1375 196 321 118 15 chr9 103619756 103619892 -20456280 + MIR SINE MIR 89 238 -24 1 1375 571 262 0 0 chr9 103619893 103620019 -20456153 - MER94 DNA AcHobo -7 127 2 1 1375 634 303 170 39 chr9 103621268 103621574 -20454598 + MLT1A0 LTR MaLR 13 358 -7 1 1375 997 33 8 0 chr9 103621970 103622092 -20454080 + B1_Mus2 SINE Alu 25 147 0 1 1375 454 312 6 0 chr9 103622828 103622988 -20453184 + Lx9 LINE L1 7295 7455 -189 1 1375 242 311 85 0 chr9 103623170 103623276 -20452896 - B3 SINE B2 -3 213 99 2 1375 522 241 90 28 chr9 103623267 103623412 -20452760 - B3A SINE B2 -42 156 3 2 1375 2155 123 17 34 chr9 103624930 103625282 -20450890 + ORR1B1 LTR MaLR 49 394 0 2 1375 507 259 89 41 chr9 103625496 103625742 -20450430 - L1MA10 LINE L1 -45 6289 6032 2 1375 513 0 0 0 chr9 103625821 103625878 -20450294 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2 1375 302 173 0 0 chr9 103625882 103625934 -20450238 - L1M2 LINE L1 -582 5730 5679 2 1375 495 0 0 0 chr9 103627145 103627200 -20448972 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1375 1044 274 95 55 chr9 103627325 103627873 -20448299 - L1MA7 LINE L1 -242 6049 5480 2 1375 779 303 121 49 chr9 103627889 103628416 -20447756 - L1MA7 LINE L1 -843 5300 4736 2 1375 560 296 63 11 chr9 103629511 103629702 -20446470 + ID_B1 SINE B4 1 201 -23 2 1375 275 191 16 0 chr9 103629804 103629867 -20446305 + GA-rich Low_complexity Low_complexity 4 67 0 2 1375 201 94 0 0 chr9 103630869 103630901 -20445271 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 2 1375 482 346 236 28 chr9 103631568 103632434 -20443738 + L2 LINE L2 208 1253 -2166 2 1375 346 328 40 16 chr9 103632869 103632993 -20443179 - B1F SINE Alu 0 149 23 2 1375 423 246 385 59 chr9 103633988 103634230 -20441942 - MTE2b LTR MaLR -44 335 15 2 1375 243 0 0 0 chr9 103634370 103634397 -20441775 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 2 1375 297 0 0 0 chr9 103634448 103634481 -20441691 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1375 383 196 309 0 chr9 103634484 103634581 -20441591 - RSINE1 SINE B4 -24 141 15 2 1375 567 85 0 0 chr9 103634670 103634752 -20441420 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1375 272 321 65 25 chr9 103634865 103635066 -20441106 - L1M5 LINE L1 -348 5776 5568 2 1375 452 284 67 60 chr9 103635311 103635461 -20440711 - B4A SINE B4 -1 291 141 2 1375 213 308 17 101 chr9 103635586 103635705 -20440467 - B4A SINE B4 -175 117 9 2 1375 1019 293 74 19 chr9 103636721 103637088 -20439084 + MTD LTR MaLR 20 404 -15 2 1375 409 311 143 37 chr9 103637107 103637324 -20438848 - MLT1A0 LTR MaLR -119 255 16 2 1375 195 184 0 0 chr9 103640302 103640340 -20435832 + T-rich Low_complexity Low_complexity 1 38 0 2 1375 1625 226 54 86 chr9 103640492 103640990 -20435182 + Lx8 LINE L1 6990 7471 -2 2 1375 408 139 0 0 chr9 103641811 103641890 -20434282 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 1375 1130 220 30 19 chr9 103644783 103645047 -20431125 - RLTR42-int LTR ERVK -1003 4519 4253 2 1375 596 208 43 19 chr9 103645361 103645523 -20430649 - RLTR42-int LTR ERVK -1283 4239 4074 2 1375 568 208 0 0 chr9 103645616 103645717 -20430455 - RLTR42-int LTR ERVK -2548 2974 2874 2 1375 863 293 54 0 chr9 103649417 103649659 -20426513 - MTE2b LTR MaLR -119 260 6 2 1375 2418 270 84 24 chr9 103649663 103651285 -20424887 + L1MC1 LINE L1 4593 6317 -16 2 1375 215 234 21 0 chr9 103651299 103651346 -20424826 + GA-rich Low_complexity Low_complexity 2 49 0 2 1375 468 291 96 11 chr9 103651883 103652060 -20424112 + MER3 DNA MER1_type 1 192 -17 2 1375 201 316 20 59 chr9 103652271 103652372 -20423800 - MER5A DNA MER1_type -91 98 2 2 1375 366 23 0 0 chr9 103652457 103652500 -20423672 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1375 288 364 36 0 chr9 103653431 103653541 -20422631 + MER20B DNA MER1_type 10 123 -660 2 1375 201 137 19 38 chr9 103653646 103653699 -20422473 + (TTTG)n Simple_repeat Simple_repeat 3 54 0 2 1375 288 77 0 0 chr9 103653703 103653742 -20422430 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1375 275 65 22 0 chr9 103654309 103654355 -20421817 + (TAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1375 213 39 0 0 chr9 103654553 103654579 -20421593 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1375 1101 198 8 67 chr9 103655572 103655810 -20420362 + URR1B DNA MER1_type 1 224 -1 2 1375 208 304 0 0 chr9 103656165 103656221 -20419951 + MIR SINE MIR 86 141 -67 2 1375 516 259 0 86 chr9 103656265 103656389 -20419783 - MER5A1 DNA MER1_type -1 165 54 2 1375 1322 154 18 0 chr9 103656389 103656609 -20419563 - URR1A DNA MER1_type -2 224 1 2 1375 516 259 0 86 chr9 103656609 103656636 -20419536 - MER5A1 DNA MER1_type -113 53 27 2 1375 397 266 62 0 chr9 103657600 103657713 -20418459 + Lx8 LINE L1 7153 7272 -201 2 1375 333 140 0 0 chr9 103657800 103657857 -20418315 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1375 228 189 36 36 chr9 103658343 103658381 -20417791 - MLT1L LTR MaLR -443 167 130 2 1375 505 236 181 7 chr9 103658381 103658442 -20417730 + B4 SINE B4 1 87 -205 2 1375 232 296 113 19 chr9 103658442 103658563 -20417609 + PB1D9 SINE Alu 3 131 -18 2 1375 320 265 58 14 chr9 103658662 103658800 -20417372 + B1_Mus1 SINE Alu 5 148 0 2 1375 301 207 0 0 chr9 103658862 103658920 -20417252 - Charlie4a DNA MER1_type -18 490 433 2 1375 880 307 16 32 chr9 103658944 103659193 -20416979 + B4A SINE B4 46 290 -2 2 1375 363 73 0 0 chr9 103659208 103659263 -20416909 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1375 307 292 118 39 chr9 103659346 103659410 -20416762 + L1MEf LINE L1 1884 1952 -4248 2 1375 360 0 0 0 chr9 103659410 103659450 -20416722 + (GGAA)n Simple_repeat Simple_repeat 4 43 0 2 1375 307 292 118 39 chr9 103659450 103659563 -20416609 + L1MEf LINE L1 1953 2075 -4125 2 1375 1116 43 34 0 chr9 103660928 103661141 -20415031 + (CA)n Simple_repeat Simple_repeat 1 220 0 2 1375 492 119 29 29 chr9 103661150 103661254 -20414918 + GA-rich Low_complexity Low_complexity 5 108 0 2 1375 222 171 0 0 chr9 103661315 103661356 -20414816 + (CAT)n Simple_repeat Simple_repeat 1 41 0 2 1375 22 0 0 0 chr9 103663098 103663120 -20413052 + AT_rich Low_complexity Low_complexity 1 22 0 2 1375 21 82 0 0 chr9 103664173 103664222 -20411950 + GC_rich Low_complexity Low_complexity 1 49 0 2 1375 458 261 155 28 chr9 103664447 103664589 -20411583 - MER5A1 DNA MER1_type -3 163 4 2 1375 875 113 48 34 chr9 103664992 103665139 -20411033 + URR1A DNA MER1_type 78 226 0 2 1375 327 113 0 0 chr9 103665388 103665441 -20410731 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1375 402 277 32 0 chr9 103665442 103665536 -20410636 - PB1D10 SINE Alu -20 97 1 2 1375 709 149 0 24 chr9 103666085 103666209 -20409963 - ID_B1 SINE B4 0 224 104 2 1375 479 112 12 0 chr9 103667314 103667394 -20408778 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1375 23 33 0 0 chr9 103667892 103667922 -20408250 + AT_rich Low_complexity Low_complexity 1 30 0 2 1375 329 328 60 50 chr9 103668704 103668903 -20407269 + MLT1A0 LTR MaLR 164 364 -1 2 1375 412 261 53 35 chr9 103670646 103670817 -20405355 - MER105 DNA DNA -1 203 30 2 1375 23 0 0 0 chr9 103671142 103671165 -20405007 + AT_rich Low_complexity Low_complexity 1 23 0 2 1375 2153 102 9 67 chr9 103671222 103671568 -20404604 - ORR1A3 LTR MaLR 0 326 1 2 1375 24 53 0 0 chr9 103671877 103671915 -20404257 + AT_rich Low_complexity Low_complexity 1 38 0 2 1375 21 57 0 0 chr9 103673122 103673157 -20403015 + AT_rich Low_complexity Low_complexity 1 35 0 2 1375 387 0 0 0 chr9 103673166 103673209 -20402963 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1375 436 220 33 0 chr9 103673217 103673308 -20402864 - RSINE1 SINE B4 -70 95 2 2 1375 369 232 216 0 chr9 103673987 103674112 -20402060 + RSINE1 SINE B4 4 155 -10 2 1375 288 53 0 0 chr9 103674126 103674164 -20402008 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1375 729 230 161 101 chr9 103674196 103674544 -20401628 + MTE2a LTR MaLR 1 369 -10 2 1375 238 297 130 35 chr9 103674716 103674831 -20401341 + L2a LINE L2 3298 3423 -3 2 1375 414 291 70 41 chr9 103675278 103675450 -20400722 - MER5A DNA MER1_type -1 188 12 2 1375 584 322 73 8 chr9 103675904 103676164 -20400008 + RMER15 LTR ERVL 299 575 0 2 1375 1214 77 6 0 chr9 103676725 103676895 -20399277 + B2_Mm1a SINE B2 1 171 -22 2 1375 348 107 14 18 chr9 103676953 103677019 -20399153 + B2_Mm2 SINE B2 46 116 -82 2 1375 225 0 0 0 chr9 103677034 103677059 -20399113 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2 1375 1210 48 0 7 chr9 103677207 103677354 -20398818 + B1_Mm SINE Alu 1 146 -1 2 1375 333 228 11 102 chr9 103677407 103677495 -20398677 - Lx8 LINE L1 -274 7199 7120 2 171 2032 114 199 3 chr9 103677713 103678039 -20398133 + ORR1B1 LTR MaLR 5 394 0 2 1376 378 260 104 30 chr9 103678223 103678358 -20397814 - RSINE1 SINE B4 -19 146 2 2 1376 751 315 101 28 chr9 103678880 103679206 -20396966 - LTR16A LTR ERVL -35 416 67 2 1376 1057 260 80 37 chr9 103679232 103679584 -20396588 + MTE2b LTR MaLR 13 379 0 2 1376 311 226 85 38 chr9 103680018 103680124 -20396048 + MTEa LTR MaLR 269 379 0 2 1376 608 227 62 17 chr9 103680163 103680342 -20395830 + MER53 DNA hAT 7 193 0 2 1376 228 320 28 28 chr9 103680603 103680709 -20395463 + Charlie24 DNA MER1_type 2330 2435 -15 2 1376 293 294 111 53 chr9 103680931 103681121 -20395051 - LTR83 LTR ERVL -191 589 389 2 1376 188 200 17 0 chr9 103681584 103681644 -20394528 + (TGGA)n Simple_repeat Simple_repeat 3 63 0 2 1376 657 25 0 0 chr9 103682100 103682179 -20393993 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 1376 1595 241 15 94 chr9 103682588 103683065 -20393107 - RLTR18B LTR ERVK -73 439 1 2 1376 455 387 0 20 chr9 103683106 103683309 -20392863 + FordPrefect_a DNA Tip100 290 488 -20 2 1376 225 128 21 0 chr9 103683396 103683443 -20392729 - L1MB4 LINE L1 -10 6170 6123 2 1376 375 250 0 42 chr9 103684363 103684459 -20391713 - RSINE1 SINE B4 -71 94 3 2 1376 256 348 0 17 chr9 103684460 103684577 -20391595 - L1_Rod LINE L1 -3475 2372 2258 2 1376 603 230 18 29 chr9 103685115 103685285 -20390887 + MER5B DNA MER1_type 1 168 -10 2 1376 861 99 8 0 chr9 103685432 103685563 -20390609 - URR1B DNA MER1_type 0 225 94 2 1376 321 269 89 50 chr9 103686173 103686353 -20389819 - L1MA5 LINE L1 -20 6280 6094 3 1376 389 314 61 20 chr9 103686540 103686842 -20389330 + L1MA5A LINE L1 5706 6022 -278 3 1376 1664 211 92 23 chr9 103686927 103687319 -20388853 + MTD LTR MaLR 1 419 0 3 1376 583 69 0 0 chr9 103687632 103687704 -20388468 - L1Md_T LINE L1 -409 6173 6102 3 1376 1838 41 0 0 chr9 103687704 103687923 -20388249 + L1Md_T LINE L1 6364 6582 0 3 1376 295 225 94 51 chr9 103688120 103688237 -20387935 - L1M5 LINE L1 -383 5781 5660 3 1376 1055 284 99 39 chr9 103688603 103688838 -20387334 + L1MA8 LINE L1 5669 5915 -376 3 1376 2516 136 7 29 chr9 103688838 103689254 -20386918 + MTB_Mm LTR MaLR 1 407 0 3 1376 1055 284 99 39 chr9 103689254 103689602 -20386570 + L1MA8 LINE L1 5916 6287 -4 3 1376 268 303 39 29 chr9 103690054 103690156 -20386016 - PB1D10 SINE Alu -13 104 2 3 1376 389 279 208 50 chr9 103690156 103690473 -20385699 - MLT1A1 LTR MaLR -41 367 1 3 1376 360 0 0 0 chr9 103690677 103690717 -20385455 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1376 459 290 16 39 chr9 103690746 103690875 -20385297 - RSINE1 SINE B4 -38 127 2 3 1376 485 302 69 10 chr9 103691762 103691969 -20384203 + L1M5 LINE L1 5553 5775 -465 3 1376 26 30 0 0 chr9 103693177 103693210 -20382962 + AT_rich Low_complexity Low_complexity 1 33 0 3 1376 405 289 65 24 chr9 103694204 103694374 -20381798 - L2 LINE L2 -527 2892 2716 3 1376 297 0 0 0 chr9 103694484 103694517 -20381655 + (TAA)n Simple_repeat Simple_repeat 3 35 0 3 1376 1222 308 57 39 chr9 103694692 103695366 -20380806 - Tigger7 DNA MER2_type -21 684 6 3 1376 333 62 0 0 chr9 103695560 103695608 -20380564 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1376 3677 161 67 12 chr9 103695615 103696307 -20379865 - Lx4B LINE L1 -4 7054 6325 3 1376 748 64 0 0 chr9 103696307 103696401 -20379771 + Lx4B LINE L1 5847 5940 -1118 3 1376 1702 299 51 25 chr9 103697307 103697910 -20378262 - Lx8 LINE L1 -380 7093 6475 3 1376 454 326 59 112 chr9 103698035 103698358 -20377814 + ORR1D2 LTR MaLR 1 307 -63 3 1376 978 84 0 0 chr9 103698358 103698513 -20377659 + (CA)n Simple_repeat Simple_repeat 2 156 0 3 1376 454 326 59 112 chr9 103698513 103698545 -20377627 + ORR1D2 LTR MaLR 308 337 -33 3 1376 948 275 52 24 chr9 103698572 103698907 -20377265 + ORR1D2-int LTR MaLR 2 326 -1044 3 1376 1020 116 18 6 chr9 103698904 103699069 -20377103 + ORR1B1 LTR MaLR 228 394 0 3 1376 485 277 153 5 chr9 103699161 103699364 -20376808 + MLT1G1 LTR MaLR 157 389 -190 3 1376 35527 55 15 6 chr9 103699451 103704548 -20371624 + L1Md_A LINE L1 446 5586 -297 3 1376 9162 5 0 0 chr9 103704548 103705544 -20370628 + L1Md_A LINE L1 5587 6582 0 3 1376 1463 247 5 17 chr9 103705544 103705589 -20370583 + L1M1 LINE L1 5616 5656 -647 3 1376 407 288 40 8 chr9 103706373 103706499 -20369673 + MLT1G LTR MaLR 1 130 -425 3 1376 467 286 86 12 chr9 103706623 103706786 -20369386 + MLT1G LTR MaLR 410 584 -7 3 1376 247 301 110 31 chr9 103707445 103707572 -20368600 + MIRc SINE MIR 70 206 -62 3 1376 269 197 0 14 chr9 103708294 103708366 -20367806 + GA-rich Low_complexity Low_complexity 3 73 0 3 1376 905 274 68 56 chr9 103708366 103708687 -20367485 - MTEa LTR MaLR -54 325 1 3 1376 477 34 0 0 chr9 103709517 103709576 -20366596 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1376 203 147 0 0 chr9 103709576 103709610 -20366562 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 1376 794 75 13 0 chr9 103710588 103710714 -20365458 - B1_Mm SINE Alu 0 147 20 3 1376 559 311 139 16 chr9 103710982 103711240 -20364932 + B4A SINE B4 1 290 -2 3 1376 300 247 0 0 chr9 103711256 103711341 -20364831 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1376 450 36 0 0 chr9 103711746 103711802 -20364370 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1376 183 156 0 0 chr9 103712127 103712159 -20364013 + A-rich Low_complexity Low_complexity 1 32 0 3 1376 341 215 0 11 chr9 103712525 103712619 -20363553 + CT-rich Low_complexity Low_complexity 2 94 0 3 1376 692 236 18 76 chr9 103713574 103713799 -20362373 + B3 SINE B2 1 212 -4 3 1376 1334 87 27 0 chr9 103713858 103714041 -20362131 - B2_Mm2 SINE B2 -7 188 1 3 1376 182 260 14 0 chr9 103714193 103714266 -20361906 + GA-rich Low_complexity Low_complexity 3 76 0 3 1376 262 22 89 0 chr9 103714287 103714332 -20361840 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1376 444 37 0 0 chr9 103714452 103714506 -20361666 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1376 377 141 12 0 chr9 103714720 103714805 -20361367 + GA-rich Low_complexity Low_complexity 1 86 0 3 1376 361 220 43 21 chr9 103715062 103715155 -20361017 + B1F SINE Alu 34 128 -21 3 1376 251 212 45 0 chr9 103715385 103715451 -20360721 + LTR84b LTR ERVL 219 287 -474 3 1376 715 266 123 10 chr9 103716203 103716511 -20359661 + ORR1E LTR MaLR 12 354 -5 3 1376 261 0 0 0 chr9 103716802 103716831 -20359341 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1376 441 95 0 0 chr9 103716968 103717031 -20359141 + (CAG)n Simple_repeat Simple_repeat 3 65 0 3 1376 228 135 0 0 chr9 103717270 103717307 -20358865 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1376 207 256 232 0 chr9 103717668 103717750 -20358422 - MIR3 SINE MIR -37 171 71 3 1376 284 306 118 53 chr9 103718794 103718946 -20357226 - B4A SINE B4 -22 270 109 3 1376 1635 185 150 57 chr9 103718962 103719416 -20356756 - RMER20A LTR ERVK 0 516 21 3 1376 277 300 0 0 chr9 103719429 103719489 -20356683 - B4A SINE B4 -199 93 34 3 1376 258 136 0 48 chr9 103719523 103719585 -20356587 - B4A SINE B4 -233 59 1 3 1376 194 337 23 40 chr9 103719648 103719824 -20356348 + L2 LINE L2 2333 2505 -914 3 1376 413 122 24 0 chr9 103720451 103720533 -20355639 + (TCTG)n Simple_repeat Simple_repeat 2 85 0 3 1376 820 266 75 29 chr9 103720603 103720882 -20355290 - B4 SINE B4 0 292 1 3 1376 232 312 65 0 chr9 103721873 103721950 -20354222 - BC1_Mm scRNA scRNA -47 105 24 3 1376 688 313 99 61 chr9 103721964 103722308 -20353864 - MLT2B2 LTR ERVL -75 440 84 3 1376 1884 139 74 16 chr9 103722538 103722903 -20353269 - ORR1B1 LTR MaLR -8 386 1 3 1376 284 372 8 0 chr9 103723533 103723654 -20352518 + (CA)n Simple_repeat Simple_repeat 1 122 0 3 1376 399 277 0 0 chr9 103723666 103723825 -20352347 + (CA)n Simple_repeat Simple_repeat 1 159 0 3 1376 660 314 127 24 chr9 103724540 103724997 -20351175 - Tigger11a DNA MER2_type -39 696 193 3 1376 763 213 0 0 chr9 103725179 103725320 -20350852 + B1_Mur1 SINE Alu 3 143 -6 3 1376 202 250 0 37 chr9 103726525 103726579 -20349593 + (CACG)n Simple_repeat Simple_repeat 2 53 0 3 1376 3440 30 5 0 chr9 103726649 103727043 -20349129 + MTA_Mm LTR MaLR 1 396 0 3 1376 628 195 0 0 chr9 103727623 103727741 -20348431 + B1_Mur1 SINE Alu 31 148 -1 3 1376 471 18 0 0 chr9 103727794 103727850 -20348322 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1376 236 341 8 53 chr9 103728868 103729001 -20347171 - L1M5 LINE L1 -307 5817 5691 3 1376 285 29 0 0 chr9 103729125 103729159 -20347013 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1376 255 192 0 19 chr9 103729191 103729244 -20346928 + ID4 SINE ID 17 68 -15 3 1376 289 127 50 12 chr9 103729246 103729326 -20346846 + CT-rich Low_complexity Low_complexity 1 83 0 3 1376 342 0 0 0 chr9 103729340 103729378 -20346794 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1376 734 254 12 0 chr9 103730009 103730174 -20345998 + B3 SINE B2 1 167 -49 3 1376 207 0 0 0 chr9 103730174 103730197 -20345975 + (CATA)n Simple_repeat Simple_repeat 4 26 0 3 1376 632 278 16 22 chr9 103730197 103730215 -20345957 + B3A SINE B2 168 183 -15 3 1376 204 280 0 0 chr9 103730949 103730999 -20345173 + L2c LINE L2 3333 3382 -5 3 1376 2647 183 43 34 chr9 103731093 103731801 -20344371 - Lx4B LINE L1 -3 7055 6258 3 1376 661 270 0 30 chr9 103731869 103732033 -20344139 + RSINE1 SINE B4 2 160 -5 3 1376 220 333 0 55 chr9 103732078 103732151 -20344021 + ID4_ SINE ID 14 82 -1 3 1376 396 0 0 0 chr9 103733442 103733486 -20342686 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 3 1376 366 23 0 0 chr9 103733585 103733628 -20342544 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1376 481 236 15 38 chr9 103733800 103733826 -20342346 - B3 SINE B2 -28 188 166 3 1376 465 19 0 0 chr9 103733826 103733880 -20342292 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1376 481 202 8 21 chr9 103733880 103733992 -20342180 - B3 SINE B2 -51 165 53 3 1376 334 291 19 10 chr9 103734047 103734151 -20342021 + MLT2B4 LTR ERVL 68 172 -384 3 1376 288 322 62 109 chr9 103734572 103734764 -20341408 + MLT2B4 LTR ERVL 385 567 0 3 1376 2124 118 21 15 chr9 103735059 103735394 -20340778 - Lx2 LINE L1 0 6997 6661 3 1376 316 381 100 27 chr9 103735523 103735930 -20340242 - MLT2F LTR ERVL -244 419 56 3 1376 975 290 54 17 chr9 103736130 103736315 -20339857 - ORR1D2 LTR MaLR -3 367 180 3 1376 405 0 0 0 chr9 103736315 103736360 -20339812 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1376 468 0 0 0 chr9 103736369 103736421 -20339751 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1376 975 290 54 17 chr9 103736421 103736579 -20339593 - ORR1D2 LTR MaLR -209 161 3 3 1376 216 0 0 0 chr9 103737040 103737064 -20339108 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1376 268 330 43 59 chr9 103737226 103737413 -20338759 - L2 LINE L2 -935 2484 2301 3 1376 1850 84 0 8 chr9 103737450 103737715 -20338457 - Lx LINE L1 -4 6650 6388 3 1376 1403 63 5 50 chr9 103737716 103737917 -20338255 + Lx LINE L1 6201 6392 -262 3 1376 1161 228 21 8 chr9 103738275 103738518 -20337654 + Lx6 LINE L1 7085 7330 -130 3 1376 817 188 12 171 chr9 103739355 103739612 -20336560 + B3 SINE B2 1 216 0 3 1376 464 258 73 56 chr9 103740114 103740364 -20335808 - MTEa LTR MaLR -1 378 116 3 1376 353 244 167 35 chr9 103740383 103740557 -20335615 - CYRA11_Mm Unknown Y-chromosome -244 373 177 3 1376 695 182 0 7 chr9 103740419 103740563 -20335609 + URR1B DNA MER1_type 83 225 0 3 1376 333 0 0 0 chr9 103740927 103740964 -20335208 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1376 396 0 0 0 chr9 103741885 103741929 -20334243 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1376 838 228 19 28 chr9 103742349 103742403 -20333769 - B3 SINE B2 -5 211 157 3 1376 425 19 0 18 chr9 103742403 103742458 -20333714 + (TATG)n Simple_repeat Simple_repeat 1 54 0 4 1376 838 228 19 28 chr9 103742458 103742615 -20333557 - B3 SINE B2 -60 156 2 3 1376 684 303 92 26 chr9 103743126 103743397 -20332775 - B4A SINE B4 -3 289 1 4 1376 195 69 0 0 chr9 103744594 103744623 -20331549 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1376 680 312 51 14 chr9 103745110 103745386 -20330786 + B4 SINE B4 1 286 -6 4 1376 381 22 0 0 chr9 103746045 103746091 -20330081 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1376 462 335 69 15 chr9 103746941 103747144 -20329028 + MIR SINE MIR 18 231 -31 4 1376 606 14 0 0 chr9 103747152 103747223 -20328949 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1376 1081 97 7 0 chr9 103747224 103747368 -20328804 - B1_Mus1 SINE Alu -3 145 1 4 1376 376 275 41 8 chr9 103748197 103748318 -20327854 + RSINE1 SINE B4 20 144 -21 4 1376 436 310 27 12 chr9 103749091 103749275 -20326897 - MLT1A1 LTR MaLR -176 189 1 4 1376 988 165 31 47 chr9 103749481 103749672 -20326500 + B2_Mm2 SINE B2 1 188 -7 4 1376 1119 117 0 0 chr9 103750018 103750198 -20325974 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1376 772 159 7 0 chr9 103750780 103750925 -20325247 - Lx4A LINE L1 0 7058 6913 4 1376 1569 85 52 0 chr9 103750925 103751136 -20325036 - Lx4A LINE L1 -362 6696 6475 4 1376 213 314 48 75 chr9 103751257 103751414 -20324758 - MER5A DNA MER1_type -2 187 39 4 1376 198 0 0 0 chr9 103751414 103751436 -20324736 + (CCA)n Simple_repeat Simple_repeat 3 24 0 4 1376 213 314 48 75 chr9 103751436 103751464 -20324708 - MER5A DNA MER1_type -151 38 8 4 1376 570 67 0 0 chr9 103751630 103751705 -20324467 + (T)n Simple_repeat Simple_repeat 1 75 0 4 1376 255 193 0 0 chr9 103751864 103751947 -20324225 + (CAGA)n Simple_repeat Simple_repeat 4 86 0 4 1376 502 301 0 0 chr9 103751958 103752202 -20323970 + (CA)n Simple_repeat Simple_repeat 1 244 0 4 1376 1541 192 55 14 chr9 103752272 103752543 -20323629 - MTD LTR MaLR -14 405 121 4 1376 1018 43 22 0 chr9 103752543 103752682 -20323490 + (GAAA)n Simple_repeat Simple_repeat 4 145 0 4 1376 1266 90 0 0 chr9 103752682 103752859 -20323313 + (GGAAA)n Simple_repeat Simple_repeat 1 178 0 4 1376 1020 138 0 0 chr9 103752860 103753027 -20323145 + (GGAGA)n Simple_repeat Simple_repeat 4 170 0 4 1376 1541 192 55 14 chr9 103753027 103753096 -20323076 - MTD LTR MaLR -299 120 49 4 1376 487 223 154 51 chr9 103753297 103753472 -20322700 + Lx8 LINE L1 7281 7473 0 4 1376 21 0 0 0 chr9 103753757 103753778 -20322394 + AT_rich Low_complexity Low_complexity 1 21 0 4 1376 701 265 105 8 chr9 103754124 103754390 -20321782 - MER31A LTR ERV1 -18 467 176 4 1376 207 0 0 0 chr9 103754949 103754972 -20321200 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1376 306 148 0 0 chr9 103755525 103755579 -20320593 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1376 911 245 131 11 chr9 103755595 103755855 -20320317 - B4A SINE B4 0 292 2 4 1376 832 107 113 0 chr9 103755915 103756074 -20320098 + RLTR47_MM LTR ERV1 356 532 0 4 1376 273 345 0 0 chr9 103756220 103756304 -20319868 + MMERGLN-int LTR ERV1 5414 5497 -2059 4 1376 900 274 80 39 chr9 103756650 103756951 -20319221 + RLTR4_MM-int LTR ERV1 6900 7312 -289 4 1376 447 19 0 0 chr9 103756951 103757003 -20319169 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1376 900 261 91 18 chr9 103757003 103757155 -20319017 + RLTR4_MM-int LTR ERV1 7313 7484 -117 4 1376 317 62 21 0 chr9 103757423 103757471 -20318701 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1376 2009 114 89 0 chr9 103757471 103757821 -20318351 + RLTR47_MM LTR ERV1 54 434 -98 4 1376 314 307 39 20 chr9 103758126 103758178 -20317994 + LTR16A LTR ERVL 228 281 -170 4 1376 1786 217 57 17 chr9 103758178 103758581 -20317591 + MTD LTR MaLR 1 419 0 4 1376 314 307 39 20 chr9 103758581 103758681 -20317491 + LTR16A LTR ERVL 282 383 -68 4 1376 274 343 21 14 chr9 103758692 103758834 -20317338 + MIR SINE MIR 88 230 -32 4 1376 315 0 0 0 chr9 103759198 103759233 -20316939 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1376 21 0 0 0 chr9 103759939 103759960 -20316212 + AT_rich Low_complexity Low_complexity 1 21 0 4 1376 744 169 66 7 chr9 103760030 103760167 -20316005 + B1_Mus2 SINE Alu 2 146 -1 4 1376 408 206 123 49 chr9 103760181 103760344 -20315828 + ORR1E LTR MaLR 18 192 -167 4 1376 789 264 5 37 chr9 103760941 103761157 -20315015 + Lx8 LINE L1 7128 7336 -137 4 1376 587 246 0 0 chr9 103761167 103761281 -20314891 + B1_Mur2 SINE Alu 1 114 -35 4 1376 730 140 0 22 chr9 103761291 103761430 -20314742 + GA-rich Low_complexity Low_complexity 1 136 0 4 1376 389 338 108 41 chr9 103761638 103762073 -20314099 + L1MCa LINE L1 152 615 -5430 4 1376 306 283 96 7 chr9 103762136 103762282 -20313890 + L1MCa LINE L1 1183 1341 -5410 4 1376 531 297 152 17 chr9 103762288 103762709 -20313463 + L1MCa LINE L1 1581 2058 -4693 4 1376 690 225 28 211 chr9 103762781 103762885 -20313287 - B4 SINE B4 -1 291 216 4 1376 849 213 137 0 chr9 103762885 103763068 -20313104 - B3 SINE B2 -8 208 1 4 1376 690 225 28 211 chr9 103763068 103763318 -20312854 - B4 SINE B4 -77 215 2 4 1376 750 260 14 43 chr9 103763965 103764174 -20311998 - B3 SINE B2 -13 203 1 4 1376 253 355 84 75 chr9 103764832 103765045 -20311127 - B4 SINE B4 -10 282 68 4 1376 1068 265 114 9 chr9 103765992 103766316 -20309856 - ORR1E LTR MaLR -1 358 1 4 1376 4358 267 107 19 chr9 103766316 103767294 -20308878 - ORR1E-int LTR MaLR -53 1527 442 4 1376 198 0 0 0 chr9 103767294 103767316 -20308856 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1376 4358 267 107 19 chr9 103767316 103767738 -20308434 - ORR1E-int LTR MaLR -1139 441 2 4 1376 707 312 82 25 chr9 103767742 103768058 -20308114 - ORR1E LTR MaLR -6 353 20 4 1376 382 252 26 4 chr9 103770664 103770898 -20305274 + (TG)n Simple_repeat Simple_repeat 1 239 0 4 1376 776 349 50 88 chr9 103771355 103771377 -20304795 + MER45R DNA Tip100 102 121 -1460 4 1376 560 306 53 27 chr9 103771377 103771565 -20304607 - B3A SINE B2 -4 194 2 4 1376 776 349 50 88 chr9 103771565 103772227 -20303945 + MER45R DNA Tip100 122 760 -821 4 1376 228 227 0 0 chr9 103772227 103772271 -20303901 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1376 698 298 91 8 chr9 103772282 103772536 -20303636 - B4A SINE B4 -12 280 6 4 1376 1487 257 78 42 chr9 103772582 103772800 -20303372 + MER45R DNA Tip100 757 988 -593 4 1376 589 210 210 0 chr9 103772800 103772976 -20303196 - B3 SINE B2 -3 213 1 4 1376 1487 257 78 42 chr9 103772976 103773357 -20302815 + MER45R DNA Tip100 989 1378 -203 4 1376 305 232 30 50 chr9 103773819 103773919 -20302253 - RMER15 LTR ERVL -70 505 408 4 1376 411 272 117 46 chr9 103777475 103777756 -20298416 + Lx8 LINE L1 7072 7372 -101 4 1376 580 294 0 6 chr9 103777821 103777982 -20298190 + B4A SINE B4 115 274 -18 4 1376 180 0 0 0 chr9 103778044 103778064 -20298108 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1376 22 35 0 0 chr9 103778146 103778175 -20297997 + AT_rich Low_complexity Low_complexity 1 29 0 4 1376 22 0 0 0 chr9 103778220 103778242 -20297930 + AT_rich Low_complexity Low_complexity 1 22 0 4 1376 307 219 0 24 chr9 103779989 103780073 -20296099 + L1MA10 LINE L1 6253 6334 0 4 1376 23 33 0 0 chr9 103780215 103780245 -20295927 + AT_rich Low_complexity Low_complexity 1 30 0 4 1376 645 255 0 7 chr9 103780835 103780981 -20295191 + ID_B1 SINE B4 79 223 -1 4 1376 264 30 0 0 chr9 103781005 103781038 -20295134 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 4 1376 278 297 11 11 chr9 103781065 103781157 -20295015 - L1ME3A LINE L1 -35 6138 6047 4 1376 263 276 18 45 chr9 103781405 103781515 -20294657 - L1ME3A LINE L1 -478 5684 5578 4 1376 695 227 62 26 chr9 103781482 103781757 -20294415 - L1MB3 LINE L1 -112 6056 5761 4 1376 1276 150 20 15 chr9 103781935 103782138 -20294034 - B3 SINE B2 -10 206 3 4 1376 359 366 25 32 chr9 103782758 103782916 -20293256 + LTR16B1 LTR ERVL 24 180 -300 4 1376 438 136 200 19 chr9 103783009 103783114 -20293058 + B1F SINE Alu 26 149 0 4 1376 230 21 85 0 chr9 103783116 103783163 -20293009 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1376 261 320 55 50 chr9 103783203 103783384 -20292788 + LTR16B1 LTR ERVL 268 449 -14 4 1376 25 51 0 0 chr9 103783986 103784025 -20292147 + AT_rich Low_complexity Low_complexity 1 39 0 4 1376 1139 276 32 13 chr9 103784162 103784474 -20291698 + Lx8 LINE L1 6956 7273 -200 4 1376 1080 306 55 20 chr9 103784588 103785210 -20290962 - L1_Mur3 LINE L1 -504 5793 5154 4 1376 1652 204 72 5 chr9 103785548 103785923 -20290249 - MTD LTR MaLR 0 419 20 4 1376 1086 288 41 3 chr9 103785968 103786288 -20289884 + MLT1A0 LTR MaLR 21 352 -13 4 1376 549 224 89 30 chr9 103786326 103786528 -20289644 - L1MC4 LINE L1 -371 7671 7458 4 1376 253 349 46 0 chr9 103786862 103786971 -20289201 + Charlie1a DNA MER1_type 5 118 -1337 4 1376 489 313 54 72 chr9 103786970 103787246 -20288926 + Charlie1a DNA MER1_type 330 600 -855 4 1376 839 249 40 72 chr9 103787274 103787525 -20288647 + B4A SINE B4 50 292 0 4 1376 268 286 0 25 chr9 103787530 103787609 -20288563 + (CATA)n Simple_repeat Simple_repeat 4 80 0 4 1376 244 291 0 19 chr9 103787613 103787767 -20288405 + (CATATA)n Simple_repeat Simple_repeat 5 155 0 4 1376 229 276 16 0 chr9 103787743 103787866 -20288306 + (CA)n Simple_repeat Simple_repeat 2 126 0 4 1376 1660 280 58 40 chr9 103787904 103788420 -20287752 + Charlie1a DNA MER1_type 584 1111 -344 4 1376 234 0 0 0 chr9 103788420 103788446 -20287726 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1376 1660 280 58 40 chr9 103788446 103788474 -20287698 + Charlie1a DNA MER1_type 1112 1142 -313 4 1376 261 0 0 0 chr9 103788474 103788503 -20287669 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 4 1376 1660 280 58 40 chr9 103788503 103788704 -20287468 + Charlie1a DNA MER1_type 1143 1343 -112 4 1376 555 228 0 8 chr9 103788728 103788852 -20287320 - RSINE1 SINE B4 -41 124 2 4 1376 279 227 0 0 chr9 103788853 103788919 -20287253 + Charlie1a DNA MER1_type 1331 1396 -59 4 1376 186 359 50 33 chr9 103789202 103789323 -20286849 + MIRb SINE MIR 7 129 -139 4 1376 193 146 41 20 chr9 103789333 103789382 -20286790 + MIR SINE MIR 82 131 -131 4 1376 24 32 0 0 chr9 103789524 103789555 -20286617 + AT_rich Low_complexity Low_complexity 1 31 0 4 1376 829 132 20 0 chr9 103789662 103789814 -20286358 + CT-rich Low_complexity Low_complexity 2 156 0 4 1376 926 125 6 0 chr9 103789814 103789990 -20286182 + (TC)n Simple_repeat Simple_repeat 1 177 0 4 1376 1167 229 35 42 chr9 103790026 103790309 -20285863 - Lx8 LINE L1 -452 7021 6741 4 1376 1759 249 63 25 chr9 103790796 103791318 -20284854 - Lx8 LINE L1 -709 6764 6223 4 1376 633 256 39 19 chr9 103791318 103791577 -20284595 + Charlie5 DNA MER1_type 2212 2475 -149 4 1376 496 327 0 24 chr9 103791790 103791959 -20284213 - RSINE1 SINE B4 0 165 1 4 1376 21 0 0 0 chr9 103791960 103791981 -20284191 + AT_rich Low_complexity Low_complexity 1 21 0 4 1376 2248 67 33 0 chr9 103792085 103792385 -20283787 + L1_Mus3 LINE L1 6314 6623 -15 4 1376 210 171 0 0 chr9 103792585 103792626 -20283546 - L2 LINE L2 -592 2827 2787 4 1376 471 342 27 23 chr9 103792626 103792886 -20283286 - MARNA DNA Mariner -230 356 96 4 1376 292 309 0 9 chr9 103793131 103793239 -20282933 + MER115 DNA Tip100 577 683 -10 4 1376 561 320 135 17 chr9 103793589 103793996 -20282176 + LTR16A1 LTR ERVL 1 455 -1 5 1376 782 298 75 43 chr9 103794316 103794704 -20281468 - MTE2a LTR MaLR -3 416 15 5 1376 297 0 0 0 chr9 103794704 103794737 -20281435 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1376 213 65 0 0 chr9 103794737 103794767 -20281405 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1376 275 342 25 38 chr9 103795395 103795553 -20280619 - MIR SINE MIR -1 267 105 5 1376 306 0 0 0 chr9 103796237 103796271 -20279901 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1376 387 0 0 0 chr9 103796271 103796313 -20279859 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1376 298 354 10 0 chr9 103796322 103796418 -20279754 - PB1D7 SINE Alu -23 97 1 5 1376 349 281 0 0 chr9 103799530 103799612 -20276560 + ID4_ SINE ID 2 83 0 5 1376 187 279 88 75 chr9 103800188 103800335 -20275837 + MIR3 SINE MIR 60 208 0 5 1376 736 255 37 11 chr9 103802346 103802536 -20273636 - B3A SINE B2 -3 195 1 5 1376 564 15 0 0 chr9 103802832 103802897 -20273275 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1376 1461 222 32 46 chr9 103804720 103805093 -20271079 + ORR1D2 LTR MaLR 3 370 0 5 1376 305 289 0 93 chr9 103805444 103805551 -20270621 - MTEa LTR MaLR -281 98 2 5 1376 300 169 135 68 chr9 103806579 103806712 -20269460 - Lx9 LINE L1 -81 7563 7422 5 1376 921 148 21 37 chr9 103806733 103806922 -20269250 - Lx9 LINE L1 -121 7523 7338 5 1376 259 337 87 75 chr9 103807431 103807604 -20268568 + MER5B DNA MER1_type 4 178 0 5 1376 582 151 0 0 chr9 103807813 103807919 -20268253 + CT-rich Low_complexity Low_complexity 2 107 0 5 1376 261 0 0 0 chr9 103807920 103807949 -20268223 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1376 876 181 7 0 chr9 103807951 103808100 -20268072 - B1_Mur4 SINE Alu 0 150 1 5 1376 2232 199 31 39 chr9 103808309 103808826 -20267346 + RLTR20B1 LTR ERVK 1 513 -50 5 21 1025 232 102 50 chr9 103808826 103809148 -20267024 + Lx8 LINE L1 7135 7473 0 5 1377 781 238 58 47 chr9 103809410 103809684 -20266488 + B4A SINE B4 2 278 -14 5 1377 222 286 0 0 chr9 103809684 103809740 -20266432 + GA-rich Low_complexity Low_complexity 1 56 0 5 1377 506 301 22 0 chr9 103810700 103810836 -20265336 + ID_B1 SINE B4 84 222 -2 5 1377 211 175 17 17 chr9 103810854 103810912 -20265260 + GA-rich Low_complexity Low_complexity 4 61 0 5 1377 659 345 60 9 chr9 103811763 103812099 -20264073 - MER89 LTR ERV1 0 559 207 5 1377 294 215 0 0 chr9 103812097 103812162 -20264010 - MER89 LTR ERV1 -494 65 1 5 1377 509 242 411 5 chr9 103812211 103812408 -20263764 + B4A SINE B4 2 278 -14 5 1377 299 314 117 0 chr9 103812502 103812639 -20263533 + MER5B DNA MER1_type 17 169 -9 5 1377 225 286 0 16 chr9 103813046 103813110 -20263062 - L2b LINE L2 -2 3373 3311 5 1377 477 288 8 0 chr9 103813300 103813418 -20262754 + RSINE1 SINE B4 8 126 -39 5 1377 1065 50 61 18 chr9 103813555 103813718 -20262454 - B2_Mm2 SINE B2 -14 181 12 5 1377 496 303 0 8 chr9 103813833 103813966 -20262206 - MER58A DNA MER1_type -67 157 26 5 1377 605 257 37 16 chr9 103814610 103814800 -20261372 - MIR SINE MIR -67 195 2 5 1377 790 248 121 11 chr9 103814961 103815226 -20260946 + RMER5 LTR ERV1 49 342 -192 5 1377 309 151 81 11 chr9 103815232 103815319 -20260853 + Lx4B LINE L1 6945 7037 -21 5 1377 180 0 0 0 chr9 103815319 103815339 -20260833 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 5 1377 390 250 26 18 chr9 103815341 103815455 -20260717 + RMER5 LTR ERV1 349 463 -71 5 1377 2236 164 106 48 chr9 103815455 103815986 -20260186 + RMER4B LTR ERVK 1 530 -55 5 1377 2401 104 3 0 chr9 103816201 103816527 -20259645 + ORR1A2 LTR MaLR 1 327 0 5 1377 2358 153 34 17 chr9 103816629 103817040 -20259132 + MTC LTR MaLR 4 421 0 5 1377 292 184 0 0 chr9 103817266 103817315 -20258857 + MTEb LTR MaLR 13 61 -318 5 1377 523 198 0 26 chr9 103817309 103817423 -20258749 + MTEb LTR MaLR 261 371 -8 5 1377 209 222 0 0 chr9 103818659 103818704 -20257468 + A-rich Low_complexity Low_complexity 1 45 0 5 1377 771 83 0 0 chr9 103819053 103819161 -20257011 + (TGGA)n Simple_repeat Simple_repeat 2 109 0 5 1377 1275 178 66 42 chr9 103819547 103819834 -20256338 - MTD LTR MaLR -8 411 118 5 1377 2154 179 71 3 chr9 103820991 103821383 -20254789 - MTD LTR MaLR 0 419 1 5 1377 291 333 0 0 chr9 103822271 103822361 -20253811 + MIR SINE MIR 30 119 -143 5 1377 369 0 0 0 chr9 103823666 103823707 -20252465 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1377 585 207 8 25 chr9 103823812 103823931 -20252241 + B3 SINE B2 1 117 -99 5 1377 246 280 27 0 chr9 103825038 103825113 -20251059 + MER58B DNA MER1_type 250 326 -15 5 1377 414 233 64 0 chr9 103825116 103825214 -20250958 + PB1D10 SINE Alu 17 117 -32 5 1377 248 281 0 0 chr9 103825226 103825290 -20250882 + ID4 SINE ID 14 77 -6 5 1377 395 162 0 42 chr9 103825551 103825622 -20250550 + ID4 SINE ID 2 69 -14 5 1377 493 295 80 63 chr9 103825641 103825880 -20250292 + MLT1B LTR MaLR 99 341 -49 5 1377 635 279 6 12 chr9 103825892 103826052 -20250120 + B3A SINE B2 1 159 -39 5 1377 297 0 0 0 chr9 103826058 103826091 -20250081 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1377 2685 71 87 5 chr9 103826760 103827130 -20249042 + MTB LTR MaLR 1 400 0 5 1377 1309 207 202 32 chr9 103827632 103828106 -20248066 + RMER2 LTR ERV1 8 562 -5 5 1377 477 50 0 0 chr9 103828138 103828198 -20247974 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1377 396 59 0 0 chr9 103828198 103828249 -20247923 + (GGGAGA)n Simple_repeat Simple_repeat 4 54 0 5 1377 33 43 0 0 chr9 103828318 103828365 -20247807 + AT_rich Low_complexity Low_complexity 1 47 0 5 1377 386 352 74 25 chr9 103828439 103828681 -20247491 - MIR SINE MIR -1 261 8 5 1377 503 244 42 0 chr9 103829239 103829358 -20246814 + B3 SINE B2 92 215 -1 5 1377 23 0 0 0 chr9 103829358 103829381 -20246791 + AT_rich Low_complexity Low_complexity 1 23 0 5 1377 1484 142 0 22 chr9 103829426 103829657 -20246515 - URR1A DNA MER1_type 0 226 1 5 1377 3357 49 2 15 chr9 103830354 103830766 -20245406 + MTB_Mm LTR MaLR 1 407 0 5 1377 1446 215 84 20 chr9 103831040 103831434 -20244738 - MTD LTR MaLR 0 419 1 5 1377 29 0 0 0 chr9 103831786 103831815 -20244357 + AT_rich Low_complexity Low_complexity 1 29 0 5 1377 299 273 340 15 chr9 103831856 103832054 -20244118 + B4A SINE B4 8 270 -22 5 1377 228 228 26 17 chr9 103832125 103832194 -20243978 + GA-rich Low_complexity Low_complexity 1 69 0 5 1377 793 277 31 34 chr9 103832534 103832826 -20243346 - B4A SINE B4 -1 291 1 5 1377 577 363 119 19 chr9 103833459 103833872 -20242300 - LTR16E2 LTR ERVL -112 456 3 5 1377 829 212 30 50 chr9 103834316 103834515 -20241657 + B3 SINE B2 5 199 -17 5 1377 270 0 0 0 chr9 103834516 103834546 -20241626 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 5 1377 1308 148 41 44 chr9 103834598 103834962 -20241210 + BGLII_B LTR ERVK 4 389 -33 5 1377 371 364 6 32 chr9 103834960 103835116 -20241056 + LTR16E2 LTR ERVL 44 195 -373 5 1377 450 0 0 0 chr9 103835556 103835606 -20240566 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1377 1475 79 16 0 chr9 103835818 103836008 -20240164 - B2_Mm2 SINE B2 -1 194 2 5 1377 1058 50 0 0 chr9 103836102 103836243 -20239929 + B1_Mus1 SINE Alu 8 148 0 5 1377 367 267 67 34 chr9 103836303 103836481 -20239691 + Lx7 LINE L1 5188 5371 -509 5 1377 790 174 14 0 chr9 103836487 103836625 -20239547 + B1_Mur1 SINE Alu 10 149 0 5 1377 876 297 148 22 chr9 103836626 103837344 -20238828 + Lx7 LINE L1 5353 6152 -1544 5 1377 425 325 94 0 chr9 103837349 103837561 -20238611 + MLT1G1 LTR MaLR 3 234 -345 5 1377 2043 79 7 4 chr9 103837575 103837854 -20238318 + L1_Mus3 LINE L1 6359 6638 0 5 1377 1769 174 83 25 chr9 103837930 103838325 -20237847 - MTD LTR MaLR -1 418 1 5 1377 357 287 238 0 chr9 103838702 103838883 -20237289 + MLT1G1 LTR MaLR 370 593 -2 5 1377 685 307 164 11 chr9 103839637 103840192 -20235980 + L2a LINE L2 2475 3117 -309 5 1377 621 0 0 0 chr9 103840395 103840464 -20235708 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 1377 306 0 0 0 chr9 103840868 103840902 -20235270 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1377 342 0 0 0 chr9 103840902 103840939 -20235233 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1377 183 267 0 0 chr9 103841190 103841235 -20234937 - MIRb SINE MIR -133 135 91 5 1377 529 239 78 43 chr9 103841433 103841595 -20234577 + L1ME2 LINE L1 6004 6155 -9 5 1377 1227 104 11 16 chr9 103842009 103842194 -20233978 + B2_Mm1t SINE B2 1 184 -9 5 1377 317 271 178 46 chr9 103842823 103843020 -20233152 + RCHARR1 DNA MER1_type 1 223 -751 5 1377 487 245 20 54 chr9 103843091 103843238 -20232934 + MER3 DNA MER1_type 67 208 -1 5 1377 399 235 165 16 chr9 103844257 103844378 -20231794 + RSINE1 SINE B4 12 150 -15 5 1377 1063 268 67 16 chr9 103844523 103844838 -20231334 - MTEa LTR MaLR -6 373 43 5 1377 404 245 19 10 chr9 103844867 103844970 -20231202 + MTEb LTR MaLR 27 130 -249 5 1377 339 25 0 0 chr9 103845256 103845296 -20230876 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1377 432 0 0 0 chr9 103845296 103845343 -20230829 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1377 1911 212 37 34 chr9 103845663 103846073 -20230099 + MTD LTR MaLR 1 411 -8 5 1377 306 242 94 55 chr9 103846432 103846559 -20229613 + L1MC LINE L1 4755 4886 -1260 5 1377 401 203 203 0 chr9 103846850 103846981 -20229191 - B3 SINE B2 -42 156 3 5 1377 397 276 42 47 chr9 103847691 103847881 -20228291 + LTR81A LTR ERV1? 104 292 -1058 6 1377 203 170 0 21 chr9 103848675 103848723 -20227449 + GA-rich Low_complexity Low_complexity 2 48 0 6 1377 325 272 88 0 chr9 103848874 103848988 -20227184 + RMER15 LTR ERVL 452 575 0 6 1377 1429 201 46 87 chr9 103849929 103850322 -20225850 - MTE2a LTR MaLR 0 379 3 6 1377 453 217 114 24 chr9 103850558 103850681 -20225491 + ID_B1 SINE B4 87 220 -4 6 1377 3210 36 36 13 chr9 103850906 103851297 -20224875 - MTB LTR MaLR 0 400 1 6 1377 750 137 29 0 chr9 103851364 103851503 -20224669 - URR1B DNA MER1_type 0 225 83 6 1377 236 272 84 37 chr9 103852058 103852165 -20224007 + MLT1A0 LTR MaLR 10 121 -244 6 1377 320 261 34 0 chr9 103852157 103852245 -20223927 + MLT1A0 LTR MaLR 275 365 0 6 1377 387 0 0 0 chr9 103852466 103852509 -20223663 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1377 194 159 45 0 chr9 103852885 103852929 -20223243 + (CATG)n Simple_repeat Simple_repeat 3 48 0 6 1377 728 286 98 11 chr9 103852937 103853202 -20222970 - B4A SINE B4 -3 289 2 6 1377 349 276 0 0 chr9 103853420 103853507 -20222665 - MLT1A0 LTR MaLR -269 96 10 6 1377 264 59 0 0 chr9 103853647 103853681 -20222491 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 6 1377 423 0 0 0 chr9 103853681 103853727 -20222445 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1377 203 78 58 19 chr9 103853995 103854047 -20222125 + GA-rich Low_complexity Low_complexity 3 56 0 6 1377 825 20 0 0 chr9 103854606 103854708 -20221464 - B2_Mm1t SINE B2 -91 102 1 6 1377 195 100 0 0 chr9 103855065 103855095 -20221077 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1377 850 274 45 22 chr9 103855657 103855926 -20220246 + B4A SINE B4 1 275 -17 6 1377 237 65 0 0 chr9 103855940 103855971 -20220201 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1377 231 247 64 53 chr9 103856073 103856167 -20220005 + L1M5 LINE L1 5563 5657 -516 6 1377 234 333 17 9 chr9 103856216 103856331 -20219841 - MLT1A0 LTR MaLR -216 149 34 6 1377 1006 208 18 22 chr9 103856368 103856594 -20219578 + RMER5 LTR ERV1 33 257 -277 6 1377 282 222 28 0 chr9 103856592 103856664 -20219508 + MLT2B4 LTR ERVL 33 106 -450 6 1377 248 316 298 108 chr9 103856709 103857025 -20219147 + MLT2B4 LTR ERVL 103 477 -79 6 1377 744 59 0 0 chr9 103857025 103857127 -20219045 + (TG)n Simple_repeat Simple_repeat 1 102 0 6 1377 469 260 48 107 chr9 103857135 103857396 -20218776 - B4 SINE B4 -16 276 3 6 1377 782 330 65 18 chr9 103857535 103857918 -20218254 - LTR80A LTR ERVL -173 410 10 6 1377 605 286 55 40 chr9 103858197 103858525 -20217647 + RLTR15 LTR ERVK 6 338 -21 6 1377 574 286 70 12 chr9 103858601 103858842 -20217330 - L1ME1 LINE L1 -239 5940 5686 6 1377 498 258 37 55 chr9 103858924 103859088 -20217084 - B4A SINE B4 0 292 132 6 1377 508 325 32 0 chr9 103859187 103859341 -20216831 + LTR80A LTR ERVL 6 164 -419 6 1377 621 231 119 0 chr9 103859360 103859503 -20216669 - B4A SINE B4 -131 161 2 6 1377 180 97 0 0 chr9 103859693 103859724 -20216448 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 6 1377 333 164 23 154 chr9 103860239 103860369 -20215803 + MT2B LTR ERVL 152 264 -337 6 1377 951 45 0 56 chr9 103860259 103860402 -20215770 + B1_Mus1 SINE Alu 12 146 -2 6 1377 1034 290 77 14 chr9 103860994 103861438 -20214734 + L1M2 LINE L1 5272 5743 -554 6 1377 459 0 0 0 chr9 103861932 103861983 -20214189 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1377 361 267 429 5 chr9 103862755 103863003 -20213169 - ORR1E LTR MaLR 0 379 8 6 1377 620 120 0 20 chr9 103863098 103863200 -20212972 + B1_Mur3 SINE Alu 50 149 0 6 1377 227 225 56 35 chr9 103863188 103863331 -20212841 + ORR1B1-int LTR MaLR 609 754 -755 6 1377 1029 56 0 20 chr9 103863228 103863374 -20212798 + B1_Mus1 SINE Alu 6 148 0 6 1377 270 136 0 0 chr9 103864469 103864513 -20211659 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1377 220 167 49 16 chr9 103864720 103864781 -20211391 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 6 1377 326 362 63 7 chr9 103864788 103865058 -20211114 - B4A SINE B4 -6 286 2 6 1377 512 205 19 6 chr9 103865815 103865972 -20210200 + CT-rich Low_complexity Low_complexity 1 159 0 6 1377 1359 73 5 40 chr9 103866463 103866662 -20209510 + B2_Mm2 SINE B2 1 192 -3 6 1377 307 274 14 0 chr9 103867180 103867253 -20208919 + B4A SINE B4 18 91 -201 6 1377 705 174 0 0 chr9 103867545 103867677 -20208495 + CT-rich Low_complexity Low_complexity 2 133 0 6 1377 459 0 0 0 chr9 103867673 103867724 -20208448 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1377 528 137 202 57 chr9 103867757 103867881 -20208291 - B1_Mus1 SINE Alu -1 147 6 6 1377 1093 210 9 27 chr9 103867893 103868113 -20208059 - B3 SINE B2 0 216 1 6 1377 842 254 0 45 chr9 103868231 103868372 -20207800 + B4A SINE B4 98 235 -57 6 1377 2216 80 83 0 chr9 103868372 103868674 -20207498 - ORR1A2 LTR MaLR 0 327 1 6 1377 842 254 0 45 chr9 103868674 103868734 -20207438 + B4A SINE B4 236 290 -2 6 1377 4321 81 31 36 chr9 103869925 103870529 -20205643 + MT2B LTR ERVL 1 601 0 6 1377 532 276 14 14 chr9 103871615 103871762 -20204410 - B1F SINE Alu -2 147 1 6 1377 584 201 96 45 chr9 103871837 103871890 -20204282 + Lx8 LINE L1 5532 5582 -265 6 1377 2403 69 31 0 chr9 103871890 103872207 -20203965 + ORR1A2 LTR MaLR 1 327 0 6 1377 584 201 96 45 chr9 103872207 103872309 -20203863 + Lx8 LINE L1 5583 5695 -152 6 1377 1576 221 37 12 chr9 103872653 103873012 -20203160 + MTD LTR MaLR 46 398 -21 6 1377 331 250 0 14 chr9 103873918 103873991 -20202181 - ID4_ SINE ID -9 74 3 6 1377 313 342 123 38 chr9 103874020 103874418 -20201754 + L1ME4a LINE L1 5563 5994 -130 6 1377 453 346 59 25 chr9 103874561 103874798 -20201374 + Lx8 LINE L1 6082 6326 -1147 6 1377 424 196 0 21 chr9 103874803 103874896 -20201276 - ORR1D2 LTR MaLR -3 367 277 6 1377 764 167 5 143 chr9 103874896 103875113 -20201059 + ORR1C2 LTR MaLR 3 189 -185 6 1377 396 111 0 0 chr9 103875116 103875188 -20200984 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1377 768 218 54 34 chr9 103875188 103875201 -20200971 + ORR1C2 LTR MaLR 172 184 -200 6 1377 666 68 0 0 chr9 103875201 103875289 -20200883 + (TCCCC)n Simple_repeat Simple_repeat 4 91 0 6 1377 768 218 54 34 chr9 103875289 103875479 -20200693 + ORR1C2 LTR MaLR 185 379 -5 6 1377 811 277 48 75 chr9 103875476 103875769 -20200403 - ORR1D2 LTR MaLR -85 285 1 6 1377 300 194 29 15 chr9 103875772 103875840 -20200332 + Lx8 LINE L1 6328 6396 -1077 6 1377 1092 233 102 71 chr9 103875840 103876279 -20199893 + RMER13A LTR ERVK 1 453 -407 6 1377 3413 167 24 13 chr9 103876432 103877068 -20199104 + Lx2B LINE L1 6350 6992 -8 6 1377 767 311 58 8 chr9 103877078 103877321 -20198851 + Lx8 LINE L1 6385 6639 -834 6 1377 1298 73 0 6 chr9 103877443 103877623 -20198549 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1377 1720 304 55 2 chr9 103877958 103878489 -20197683 + Lx8 LINE L1 6628 7186 -287 6 1377 414 190 169 65 chr9 103878748 103878959 -20197213 + L1ME2 LINE L1 5188 5418 -746 6 1377 337 128 164 41 chr9 103879065 103879176 -20196996 - B2_Mm2 SINE B2 -3 190 48 6 1377 1289 91 17 0 chr9 103879227 103879403 -20196769 - B2_Mm1t SINE B2 -14 179 1 6 1377 462 293 118 72 chr9 103879404 103879670 -20196502 + L1ME2 LINE L1 5663 5958 -206 6 1377 1672 201 54 30 chr9 103879670 103880040 -20196132 + MTE2a LTR MaLR 1 379 0 6 1377 209 33 33 0 chr9 103880050 103880080 -20196092 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1377 462 293 118 72 chr9 103880080 103880185 -20195987 + L1ME2 LINE L1 5972 6063 -101 6 1377 543 283 199 6 chr9 103880185 103880512 -20195660 - MLT1B LTR MaLR 0 390 1 6 1377 462 293 118 72 chr9 103880512 103880602 -20195570 + L1ME2 LINE L1 6064 6157 -7 6 1377 24 32 0 0 chr9 103880648 103880679 -20195493 + AT_rich Low_complexity Low_complexity 1 31 0 6 1377 1312 241 95 9 chr9 103880963 103881289 -20194883 - ORR1D2 LTR MaLR -12 358 5 6 1377 563 296 130 74 chr9 103881478 103881978 -20194194 + L1MEg LINE L1 717 1244 -4840 6 1377 399 157 0 0 chr9 103882087 103882157 -20194015 + GA-rich Low_complexity Low_complexity 3 72 0 6 1377 374 235 197 22 chr9 103882175 103882358 -20193814 + L1MEg LINE L1 1348 1562 -4522 6 1377 2341 94 22 3 chr9 103882498 103882819 -20193353 - ORR1A2 LTR MaLR 0 327 1 6 1377 959 115 13 0 chr9 103883001 103883158 -20193014 - URR1A DNA MER1_type 0 226 68 6 1377 1169 243 113 23 chr9 103883173 103883519 -20192653 + MTE2a LTR MaLR 3 379 0 6 1377 500 277 15 0 chr9 103884241 103884371 -20191801 + B1F SINE Alu 11 142 -7 6 1377 536 276 201 12 chr9 103884545 103884794 -20191378 - Lx8 LINE L1 -192 7281 6986 6 1377 519 45 0 0 chr9 103885417 103885483 -20190689 + (TCC)n Simple_repeat Simple_repeat 3 68 0 6 1377 213 65 0 0 chr9 103885484 103885515 -20190657 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1377 444 19 0 0 chr9 103885516 103885569 -20190603 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1377 304 283 0 42 chr9 103885616 103885712 -20190460 - PB1D10 SINE Alu -17 100 9 6 1377 217 305 0 78 chr9 103885622 103885725 -20190447 - ID_B1 SINE B4 -49 175 81 6 1377 875 262 98 41 chr9 103885786 103886124 -20190048 - ORR1E LTR MaLR 0 359 3 6 1377 1481 247 71 30 chr9 103886177 103886711 -20189461 + L1MA8 LINE L1 4473 5028 -1115 6 1377 344 193 11 88 chr9 103886859 103886950 -20189222 - L1MA7 LINE L1 -318 5973 5890 6 1377 1477 218 68 33 chr9 103887004 103887538 -20188634 + L1MA8 LINE L1 5215 5764 -527 6 1377 879 246 133 36 chr9 103887523 103887885 -20188287 + L1MA8 LINE L1 5890 6286 -5 6 1377 190 300 28 28 chr9 103888294 103888366 -20187806 - MIR SINE MIR -102 160 89 6 1377 201 109 20 61 chr9 103888491 103888540 -20187632 + (TTA)n Simple_repeat Simple_repeat 2 48 0 6 1377 326 75 0 36 chr9 103888582 103888637 -20187535 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 6 1377 286 210 49 12 chr9 103888640 103888722 -20187450 + RMER5 LTR ERV1 13 97 -437 6 1377 1751 96 21 35 chr9 103888731 103889013 -20187159 + ORR1A2 LTR MaLR 9 286 -41 6 1377 34215 73 14 6 chr9 103889030 103894331 -20181841 + L1Md_F2 LINE L1 258 5586 -297 6 1377 8092 52 5 6 chr9 103894331 103895328 -20180844 + L1Md_F2 LINE L1 5587 6582 0 6 1377 395 73 0 0 chr9 103895328 103895383 -20180789 + ORR1A3 LTR MaLR 272 326 0 6 1377 1204 241 36 46 chr9 103895398 103895789 -20180383 + RMER5 LTR ERV1 148 534 0 6 1377 301 271 141 0 chr9 103895789 103895874 -20180298 - ID_B1 SINE B4 -56 168 72 6 1377 628 292 78 32 chr9 103896134 103896353 -20179819 + B4A SINE B4 2 230 -62 6 1377 1702 207 43 14 chr9 103896383 103896735 -20179437 + Lx5 LINE L1 6689 7050 0 6 1377 411 256 14 5 chr9 103896757 103896878 -20179294 - L1_Rod LINE L1 -396 5787 5618 6 1377 248 233 12 88 chr9 103896952 103897032 -20179140 + B4A SINE B4 217 290 -2 6 1377 238 242 272 0 chr9 103898217 103898309 -20177863 - ID_B1 SINE B4 -176 116 1 6 1377 431 366 17 6 chr9 103898663 103898836 -20177336 + MER58A DNA MER1_type 1 175 -49 6 1377 375 255 104 67 chr9 103899415 103899579 -20176593 - MER5B DNA MER1_type 0 178 9 7 1377 222 246 9 17 chr9 103899895 103899982 -20176190 + CT-rich Low_complexity Low_complexity 1 86 0 7 1377 270 0 0 0 chr9 103899983 103900013 -20176159 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1377 459 0 0 0 chr9 103900013 103900063 -20176109 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1377 298 237 9 76 chr9 103900066 103900171 -20176001 - B1F SINE Alu -51 98 1 7 1377 363 297 219 21 chr9 103900321 103900701 -20175471 - MLT1H1 LTR MaLR -28 527 73 7 1377 307 238 71 62 chr9 103900765 103900877 -20175295 + MER45A DNA Tip100 59 171 -7 7 1377 275 231 242 0 chr9 103900932 103900985 -20175187 + PB1D7 SINE Alu 1 75 -45 7 1377 180 0 0 0 chr9 103900985 103901005 -20175167 + (AAGTG)n Simple_repeat Simple_repeat 2 21 0 7 1377 275 231 242 0 chr9 103901005 103901042 -20175130 + PB1D7 SINE Alu 76 112 -8 7 1377 1424 38 5 70 chr9 103901058 103901258 -20174914 - B2_Mm2 SINE B2 -7 188 2 7 1377 370 368 0 0 chr9 103901282 103901399 -20174773 - RSINE1 SINE B4 -24 141 25 7 1377 292 186 16 48 chr9 103901995 103902057 -20174115 - MTEa LTR MaLR -8 371 312 7 1377 415 216 35 18 chr9 103902057 103902227 -20173945 + GA-rich Low_complexity Low_complexity 1 173 0 7 1377 342 259 23 0 chr9 103902208 103902382 -20173790 + G-rich Low_complexity Low_complexity 3 180 0 7 1377 736 269 15 0 chr9 103902417 103902614 -20173558 - MTEa LTR MaLR -55 324 125 7 1377 403 248 18 35 chr9 103902579 103902692 -20173480 + ID_B1 SINE B4 104 214 -10 7 1377 1025 139 0 16 chr9 103902706 103902889 -20173283 + GA-rich Low_complexity Low_complexity 1 180 0 7 1377 609 304 86 22 chr9 103903332 103903554 -20172618 + LTR16A LTR ERVL 206 441 -10 7 1377 823 195 0 26 chr9 103907248 103907401 -20168771 + B1_Mur2 SINE Alu 1 149 0 7 1377 296 136 58 10 chr9 103908205 103908309 -20167863 + (TCTG)n Simple_repeat Simple_repeat 2 110 0 7 1377 875 266 53 25 chr9 103908389 103908674 -20167498 - MTE2b LTR MaLR -10 369 77 7 1377 376 255 18 78 chr9 103908697 103908863 -20167309 + RSINE1 SINE B4 6 161 -4 7 1377 509 216 10 2 chr9 103909730 103909857 -20166315 + B1_Mur4 SINE Alu 1 129 -21 7 1377 33 0 0 0 chr9 103909952 103909985 -20166187 + AT_rich Low_complexity Low_complexity 1 33 0 7 1377 567 294 0 47 chr9 103909985 103910156 -20166016 - RSINE1 SINE B4 0 165 3 7 1377 749 228 68 19 chr9 103911652 103911858 -20164314 + B3 SINE B2 1 216 0 7 1377 502 255 0 9 chr9 103911907 103912018 -20164154 + PB1D7 SINE Alu 11 120 0 7 1377 725 175 8 0 chr9 103912314 103912440 -20163732 + B1_Mur4 SINE Alu 11 137 -13 7 1377 303 28 0 0 chr9 103912441 103912477 -20163695 + (GAAAA)n Simple_repeat Simple_repeat 1 36 0 7 1377 454 262 77 12 chr9 103912693 103912863 -20163309 + MER58B DNA MER1_type 20 200 -141 7 1377 711 112 0 0 chr9 103912877 103912984 -20163188 + (GA)n Simple_repeat Simple_repeat 2 108 0 7 1377 21 57 0 0 chr9 103913078 103913113 -20163059 + AT_rich Low_complexity Low_complexity 1 35 0 7 1377 251 309 0 24 chr9 103913433 103913516 -20162656 - ID2 SINE ID -1 82 2 7 1377 546 16 0 0 chr9 103913540 103913603 -20162569 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1377 320 224 13 13 chr9 103914308 103914385 -20161787 + MER58A DNA MER1_type 1 77 -147 7 1377 2490 158 13 42 chr9 103914399 103914874 -20161298 + RMER4A LTR ERVK 6 466 0 7 1377 358 314 84 21 chr9 103914874 103915017 -20161155 + MER58B DNA MER1_type 189 340 -1 7 1377 1799 89 8 30 chr9 103915127 103915394 -20160778 - L1Md_F2 LINE L1 -12 6570 6310 7 1377 442 287 87 0 chr9 103915626 103915741 -20160431 + PB1 SINE Alu 1 125 -2 7 1377 1905 240 134 106 chr9 103915862 103917041 -20159131 - RMER12 LTR ERVK -109 1213 2 7 1377 342 253 0 71 chr9 103917051 103917136 -20159036 + ID_B1 SINE B4 55 133 -91 7 1377 253 343 0 0 chr9 103917145 103917215 -20158957 + ID4_ SINE ID 1 70 -13 7 1377 386 183 28 38 chr9 103917217 103917507 -20158665 + (CA)n Simple_repeat Simple_repeat 1 286 0 7 1377 339 44 0 0 chr9 103918152 103918197 -20157975 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1377 270 0 0 0 chr9 103919147 103919177 -20156995 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 7 1377 619 215 30 23 chr9 103919177 103919310 -20156862 - B1_Mm SINE Alu -13 134 1 7 1377 682 138 89 0 chr9 103919607 103919730 -20156442 + B1_Mur3 SINE Alu 8 141 -8 7 1377 251 71 24 0 chr9 103919732 103919774 -20156398 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 7 1377 794 256 76 33 chr9 103919851 103920126 -20156046 + B4A SINE B4 1 287 -5 7 1377 982 282 7 17 chr9 103920646 103920938 -20155234 + B4A SINE B4 3 291 -1 7 1377 385 300 0 9 chr9 103921529 103921640 -20154532 - RSINE1 SINE B4 -45 120 11 7 1377 318 106 0 0 chr9 103922139 103922186 -20153986 + (CCCCCA)n Simple_repeat Simple_repeat 2 48 0 7 1377 261 0 0 0 chr9 103923205 103923234 -20152938 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1377 480 198 0 56 chr9 103923234 103923332 -20152840 - ID_B1 SINE B4 -9 215 123 7 1377 236 241 96 0 chr9 103924092 103924175 -20151997 + MER46C DNA MER2_type 238 328 -10 7 1377 1135 189 44 0 chr9 103924230 103924436 -20151736 + B3 SINE B2 2 216 0 7 1377 1058 237 29 25 chr9 103924472 103924753 -20151419 + B4A SINE B4 11 292 0 7 1377 459 35 0 0 chr9 103924807 103924864 -20151308 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1377 24 0 0 0 chr9 103925177 103925201 -20150971 + GC_rich Low_complexity Low_complexity 1 24 0 7 1377 908 166 0 0 chr9 103925389 103925528 -20150644 - B1_Mur4 SINE Alu -10 140 2 7 1377 598 247 55 126 chr9 103927175 103927485 -20148687 - B4A SINE B4 0 292 5 7 1377 341 59 39 0 chr9 103927510 103927561 -20148611 + (CTTTG)n Simple_repeat Simple_repeat 3 55 0 7 1377 1357 95 11 5 chr9 103927563 103927754 -20148418 - B2_Mm2 SINE B2 0 195 4 7 1377 865 142 0 20 chr9 103927755 103927906 -20148266 - B1_Mur4 SINE Alu 0 150 3 7 1377 283 252 0 112 chr9 103927809 103927925 -20148247 - MT2B LTR ERVL -350 251 149 7 1377 195 42 0 0 chr9 103928338 103928362 -20147810 + (CCA)n Simple_repeat Simple_repeat 3 26 0 7 1377 240 35 0 0 chr9 103928683 103928712 -20147460 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 7 1377 399 16 31 31 chr9 103928712 103928777 -20147395 + (TTTTTG)n Simple_repeat Simple_repeat 1 65 0 7 1377 1046 47 8 0 chr9 103928806 103928935 -20147237 + B1_Mus1 SINE Alu 5 134 -14 7 1377 582 15 0 0 chr9 103928935 103929002 -20147170 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1377 9236 170 37 33 chr9 103929235 103931437 -20144735 - Lx6 LINE L1 -1 7459 5248 7 1377 416 170 125 54 chr9 103932599 103932711 -20143461 - B1F1 SINE Alu -2 147 28 7 1377 447 19 0 0 chr9 103932763 103932815 -20143357 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 7 1377 780 96 7 22 chr9 103932846 103932985 -20143187 + (TTC)n Simple_repeat Simple_repeat 2 138 0 7 1377 201 154 0 0 chr9 103933013 103933052 -20143120 + (TTTAG)n Simple_repeat Simple_repeat 2 40 0 7 1377 316 355 0 7 chr9 103933068 103933210 -20142962 + (TG)n Simple_repeat Simple_repeat 2 142 0 7 1377 827 198 17 0 chr9 103933214 103933386 -20142786 - B3A SINE B2 -23 175 1 7 1377 22 56 0 0 chr9 103933493 103933529 -20142643 + AT_rich Low_complexity Low_complexity 1 36 0 7 1377 230 232 48 24 chr9 103933634 103933718 -20142454 - L1M2 LINE L1 -1137 5006 4921 7 1377 23 33 0 0 chr9 103933721 103933751 -20142421 + AT_rich Low_complexity Low_complexity 1 30 0 7 1377 201 182 0 0 chr9 103933840 103933873 -20142299 + T-rich Low_complexity Low_complexity 1 33 0 7 1377 333 0 0 0 chr9 103933972 103934009 -20142163 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1377 255 279 0 0 chr9 103934604 103934672 -20141500 + L1MB1 LINE L1 6038 6105 -63 7 1377 508 240 73 52 chr9 103934684 103934820 -20141352 + ID_B1 SINE B4 78 216 -8 7 1377 435 221 67 9 chr9 103934846 103934951 -20141221 + PB1D10 SINE Alu 6 116 -1 7 1377 369 290 59 30 chr9 103935845 103935980 -20140192 + B1F1 SINE Alu 1 139 -10 7 1377 294 29 0 0 chr9 103935984 103936019 -20140153 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 7 1377 235 274 110 0 chr9 103936019 103936092 -20140080 + ID4_ SINE ID 3 83 0 7 1377 209 33 33 0 chr9 103936239 103936269 -20139903 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1377 181 53 51 26 chr9 103936362 103936401 -20139771 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 7 1377 460 333 12 0 chr9 103938896 103939064 -20137108 + MER58A DNA MER1_type 52 221 -3 7 1377 350 42 21 0 chr9 103939602 103939650 -20136522 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1378 719 266 59 62 chr9 103940128 103940417 -20135755 + B4 SINE B4 5 292 0 7 1378 25 0 0 0 chr9 103942301 103942326 -20133846 + AT_rich Low_complexity Low_complexity 1 25 0 7 1378 23 33 0 0 chr9 103943140 103943170 -20133002 + AT_rich Low_complexity Low_complexity 1 30 0 7 1378 26 0 0 0 chr9 103943926 103943952 -20132220 + AT_rich Low_complexity Low_complexity 1 26 0 7 1378 662 129 81 0 chr9 103943964 103944010 -20132162 + L1Md_F2 LINE L1 6449 6494 -88 7 1378 195 42 0 0 chr9 103944010 103944034 -20132138 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 7 1378 662 129 81 0 chr9 103944034 103944111 -20132061 + L1Md_F2 LINE L1 6495 6580 -2 7 1378 24 32 0 0 chr9 103944124 103944155 -20132017 + AT_rich Low_complexity Low_complexity 1 31 0 7 1378 261 0 0 0 chr9 103944989 103945018 -20131154 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1378 839 262 30 70 chr9 103945018 103945317 -20130855 - B4 SINE B4 -5 287 1 7 1378 241 284 34 11 chr9 103945333 103945422 -20130750 - PB1D10 SINE Alu -26 91 1 7 1378 338 272 40 8 chr9 103945607 103945733 -20130439 + B1F SINE Alu 12 141 -8 8 1378 216 97 0 0 chr9 103947551 103947582 -20128590 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 8 1378 304 0 0 0 chr9 103949505 103949548 -20126624 - L1Md_T LINE L1 0 6582 6540 8 1378 777 255 143 30 chr9 103950279 103951048 -20125124 - L1MA5 LINE L1 -67 6233 5330 8 1378 272 158 0 17 chr9 103951096 103951154 -20125018 + CT-rich Low_complexity Low_complexity 2 58 0 8 1378 269 297 66 0 chr9 103951179 103951270 -20124902 - PB1D10 SINE Alu -16 101 5 8 1378 739 168 8 0 chr9 103952323 103952442 -20123730 + PB1D9 SINE Alu 1 120 0 8 1378 686 264 96 13 chr9 103952742 103952972 -20123200 + B4A SINE B4 1 249 -43 8 1378 2257 299 79 29 chr9 103952972 103953954 -20122218 + Lx8 LINE L1 6430 7461 -12 8 1378 26 74 0 0 chr9 103954089 103954143 -20122029 + AT_rich Low_complexity Low_complexity 1 54 0 8 1378 182 118 0 29 chr9 103954536 103954571 -20121601 + (CATA)n Simple_repeat Simple_repeat 3 36 0 8 1378 1019 116 214 0 chr9 103954686 103954859 -20121313 + B3 SINE B2 1 210 -6 8 1378 1722 26 0 0 chr9 103955635 103955828 -20120344 + B2_Mm1a SINE B2 1 193 0 8 1378 453 259 139 7 chr9 103957116 103957260 -20118912 + RSINE1 SINE B4 3 165 0 8 1378 358 229 38 9 chr9 103957674 103957780 -20118392 + PB1D7 SINE Alu 6 114 -6 8 1378 296 301 0 0 chr9 103957829 103957902 -20118270 - PB1D10 SINE Alu -42 75 3 8 1378 243 293 0 0 chr9 103958612 103958670 -20117502 + Cheshire DNA MER1_type 5 62 -2358 8 1378 281 330 40 48 chr9 103958695 103958819 -20117353 - B1F1 SINE Alu -18 131 9 8 1378 311 326 52 0 chr9 103958872 103959007 -20117165 + Cheshire DNA MER1_type 132 273 -2147 8 1378 207 0 0 0 chr9 103959171 103959194 -20116978 + (CCA)n Simple_repeat Simple_repeat 3 25 0 8 1378 298 169 215 0 chr9 103959888 103959953 -20116219 - ID4 SINE ID 0 83 5 8 1378 341 93 19 0 chr9 103961057 103961111 -20115061 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1378 33 100 0 0 chr9 103961215 103961325 -20114847 + AT_rich Low_complexity Low_complexity 1 110 0 8 1378 1244 14 0 14 chr9 103961579 103961727 -20114445 + B1_Mus2 SINE Alu 2 147 0 8 1378 212 0 36 0 chr9 103961896 103961924 -20114248 + (TAA)n Simple_repeat Simple_repeat 2 30 0 8 1378 618 269 38 38 chr9 103962814 103963023 -20113149 - B3 SINE B2 0 216 8 8 1378 465 245 0 0 chr9 103963110 103963204 -20112968 + PB1D10 SINE Alu 1 94 -23 8 1378 412 303 9 9 chr9 103963114 103963224 -20112948 + ID_B1 SINE B4 86 195 -29 8 1378 447 234 40 8 chr9 103964858 103964983 -20111189 - B1F SINE Alu -18 131 3 8 1378 201 158 0 26 chr9 103965312 103965351 -20110821 + (CCG)n Simple_repeat Simple_repeat 2 39 0 8 1378 36 0 0 0 chr9 103965508 103965544 -20110628 + AT_rich Low_complexity Low_complexity 1 36 0 8 1378 21 0 0 0 chr9 103965994 103966015 -20110157 + GC_rich Low_complexity Low_complexity 1 21 0 8 1378 203 136 22 22 chr9 103966785 103966830 -20109342 + T-rich Low_complexity Low_complexity 6 50 0 8 1378 319 226 32 144 chr9 103967286 103967411 -20108761 + PB1D10 SINE Alu 1 108 -9 8 1378 568 197 16 16 chr9 103967597 103967721 -20108451 + RSINE1 SINE B4 14 137 -28 8 1378 476 270 146 36 chr9 103967885 103968242 -20107930 + L1M5 LINE L1 4318 4713 -1433 8 1378 5064 94 80 102 chr9 103968247 103969160 -20107012 - RLTR13B1 LTR ERVK 0 893 1 8 1378 452 301 50 44 chr9 103969355 103969515 -20106657 + ID_B1 SINE B4 3 163 -61 8 1378 365 222 10 0 chr9 103969608 103969707 -20106465 + (TA)n Simple_repeat Simple_repeat 1 100 0 8 1378 241 228 35 0 chr9 103969874 103969931 -20106241 - MIR SINE MIR -64 144 86 8 1378 9582 45 11 6 chr9 103970366 103972233 -20103939 - L1Md_F2 LINE L1 -12 6570 4696 8 1378 226 307 80 0 chr9 103972348 103972436 -20103736 + L1M5 LINE L1 5744 5838 -402 8 1378 574 223 78 55 chr9 103972442 103972784 -20103388 + RMER4A LTR ERVK 13 466 0 8 1378 1118 89 0 0 chr9 103973471 103973617 -20102555 - B1_Mus2 SINE Alu 0 147 2 8 1378 261 312 36 72 chr9 103973624 103973790 -20102382 - L2 LINE L2 -570 2849 2690 8 1378 309 192 12 110 chr9 103973905 103973987 -20102185 + ORR1E LTR MaLR 1 74 -296 8 1378 303 324 34 113 chr9 103974645 103974937 -20101235 + ORR1E LTR MaLR 91 359 0 8 1378 312 27 0 0 chr9 103974944 103974981 -20101191 + (TA)n Simple_repeat Simple_repeat 1 37 0 8 1378 277 312 126 6 chr9 103974981 103975155 -20101017 - L2 LINE L2 -955 2464 2270 8 1378 907 81 0 0 chr9 103975156 103975280 -20100892 + B2_Mm2 SINE B2 1 124 -71 8 1378 387 0 0 0 chr9 103975308 103975351 -20100821 + (TA)n Simple_repeat Simple_repeat 1 43 0 8 1378 189 213 0 0 chr9 103975383 103975430 -20100742 + A-rich Low_complexity Low_complexity 5 51 0 8 1378 182 243 69 28 chr9 103975474 103975546 -20100626 - L2 LINE L2 -1187 2232 2158 8 1378 243 0 0 0 chr9 103976223 103976250 -20099922 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1378 351 65 0 0 chr9 103976349 103976395 -20099777 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1378 255 337 0 0 chr9 103976587 103976682 -20099490 + L1MA6 LINE L1 6198 6292 -8 8 1378 399 21 0 0 chr9 103977218 103977266 -20098906 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1378 234 0 0 0 chr9 103978984 103979010 -20097162 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1378 788 278 16 131 chr9 103979057 103979371 -20096801 - B4 SINE B4 -8 284 7 8 1378 218 316 75 25 chr9 103979874 103979994 -20096178 - MIRb SINE MIR -22 246 121 8 1378 216 97 0 0 chr9 103980223 103980254 -20095918 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1378 333 0 0 0 chr9 103980254 103980290 -20095882 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 1378 222 62 0 0 chr9 103980446 103980478 -20095694 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 8 1378 1293 27 0 0 chr9 103980483 103980630 -20095542 - B1_Mus2 SINE Alu 0 147 1 8 1378 399 21 0 0 chr9 103981068 103981116 -20095056 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1378 348 88 0 0 chr9 103981116 103981173 -20094999 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1378 1094 124 62 6 chr9 103981460 103981638 -20094534 + B2_Mm2 SINE B2 3 190 -5 8 1378 379 191 475 22 chr9 103981864 103982003 -20094169 + B3 SINE B2 3 204 -12 8 1378 936 133 0 0 chr9 103982715 103982895 -20093277 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1378 381 205 0 0 chr9 103982923 103983035 -20093137 + (TG)n Simple_repeat Simple_repeat 1 112 0 8 1378 277 274 55 0 chr9 103983039 103983112 -20093060 - RSINE1 SINE B4 0 165 89 8 1378 25 31 0 0 chr9 103983222 103983254 -20092918 + AT_rich Low_complexity Low_complexity 1 32 0 8 1378 483 305 25 25 chr9 103984464 103984622 -20091550 - MTEa LTR MaLR -199 180 23 8 1378 22 35 0 0 chr9 103985560 103985589 -20090583 + AT_rich Low_complexity Low_complexity 1 29 0 8 1378 1415 80 21 5 chr9 103985777 103985966 -20090206 - B2_Mm2 SINE B2 -3 192 1 8 1378 518 213 0 18 chr9 103990374 103990484 -20085688 - PB1D10 SINE Alu -1 116 9 8 1378 227 188 42 0 chr9 103990510 103990558 -20085614 - L1MEe LINE L1 -4618 236 187 8 1378 289 237 0 38 chr9 103990636 103990715 -20085457 - RSINE1 SINE B4 -88 77 2 8 1378 996 78 35 7 chr9 103991891 103992033 -20084139 - B1_Mm SINE Alu 0 147 2 8 1378 1169 56 0 0 chr9 103992169 103992313 -20083859 - B1_Mus2 SINE Alu -1 146 3 8 1378 292 250 56 0 chr9 103992388 103992460 -20083712 + PB1D10 SINE Alu 1 76 -41 8 1378 207 0 0 0 chr9 103992496 103992519 -20083653 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1378 320 283 21 11 chr9 103992785 103992878 -20083294 - B1F2 SINE Alu -51 98 5 8 1378 911 183 0 0 chr9 103992931 103993073 -20083099 - B1_Mur3 SINE Alu -6 143 2 8 1378 441 128 19 122 chr9 103993142 103993249 -20082923 + B1F SINE Alu 9 104 -45 8 1378 501 17 0 0 chr9 103993296 103993354 -20082818 + (GGGGA)n Simple_repeat Simple_repeat 4 61 0 8 1378 188 64 85 0 chr9 103994972 103995019 -20081153 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 1378 1129 75 0 7 chr9 103995103 103995251 -20080921 - B1_Mus1 SINE Alu 0 148 2 8 1378 546 255 13 65 chr9 103995950 103996105 -20080067 - ID_B1 SINE B4 0 224 78 8 1378 1450 54 11 11 chr9 103996346 103996533 -20079639 - B2_Mm1t SINE B2 -5 188 2 8 1378 551 281 79 0 chr9 103996548 103996712 -20079460 - B3A SINE B2 -18 180 4 8 1378 224 220 168 2 chr9 103997075 103997169 -20079003 + PB1D9 SINE Alu 13 119 -1 8 1378 512 122 0 11 chr9 103997192 103997283 -20078889 + B1_Mus2 SINE Alu 58 147 0 8 1378 692 282 13 95 chr9 103998719 103999025 -20077147 + B4 SINE B4 2 282 -10 8 1378 24 53 0 0 chr9 104000435 104000473 -20075699 + AT_rich Low_complexity Low_complexity 1 38 0 1 1378 276 262 48 0 chr9 104000536 104000620 -20075552 - L1MC4a LINE L1 0 7882 7795 2 1378 180 0 0 0 chr9 104000702 104000722 -20075450 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1378 333 0 0 0 chr9 104000950 104000987 -20075185 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1378 225 262 16 0 chr9 104002319 104002380 -20073792 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1378 651 345 48 26 chr9 104002384 104002655 -20073517 - B4A SINE B4 -4 288 12 6 1378 23 0 0 0 chr9 104002814 104002837 -20073335 + AT_rich Low_complexity Low_complexity 1 23 0 7 1378 252 236 21 42 chr9 104002956 104003048 -20073124 - B1F SINE Alu -24 125 34 8 1378 210 219 0 0 chr9 104004968 104005009 -20071163 + G-rich Low_complexity Low_complexity 2 42 0 9 1378 244 275 21 52 chr9 104005624 104005720 -20070452 - MER63C DNA AcHobo -565 365 273 1 1378 638 190 176 44 chr9 104005751 104005933 -20070239 - B3 SINE B2 -6 210 5 1 1378 302 305 113 66 chr9 104005996 104006147 -20070025 + ID_B1 SINE B4 2 163 -129 1 1378 201 262 0 0 chr9 104006151 104006193 -20069979 + GA-rich Low_complexity Low_complexity 4 45 0 1 1378 333 0 0 0 chr9 104006204 104006241 -20069931 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1378 201 147 0 0 chr9 104006336 104006370 -20069802 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1378 523 259 46 64 chr9 104006495 104006668 -20069504 - MTD LTR MaLR -232 187 18 1 1378 329 225 152 29 chr9 104007304 104007409 -20068763 + PB1D7 SINE Alu 1 118 -2 1 1378 345 47 0 0 chr9 104007993 104008036 -20068136 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1378 1265 20 7 0 chr9 104008742 104008888 -20067284 + B1_Mus2 SINE Alu 1 147 0 1 1378 243 0 0 0 chr9 104008899 104008926 -20067246 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1378 393 179 176 12 chr9 104009108 104009193 -20066979 - ID_B1 SINE B4 0 224 126 2 1378 408 238 56 19 chr9 104010511 104010618 -20065554 - PB1D10 SINE Alu -38 111 1 2 1378 783 201 6 86 chr9 104010618 104010712 -20065460 - ID SINE ID -143 81 2 2 1378 306 184 0 0 chr9 104010978 104011027 -20065145 + B2_Mm2 SINE B2 2 50 -145 2 1378 323 343 86 32 chr9 104011422 104011609 -20064563 - ORR1E LTR MaLR -162 197 1 2 1378 334 222 37 0 chr9 104012510 104012591 -20063581 - PB1D10 SINE Alu -10 107 24 2 1378 735 139 48 32 chr9 104012956 104013082 -20063090 + B1_Mus2 SINE Alu 3 130 -17 2 1378 22 0 0 0 chr9 104013702 104013724 -20062448 + AT_rich Low_complexity Low_complexity 1 22 0 2 1378 238 293 74 31 chr9 104013724 104013886 -20062286 - HAL1 LINE L1 -758 1749 1581 2 1378 276 204 79 11 chr9 104013940 104014029 -20062143 - HAL1 LINE L1 -1011 1496 1402 2 1378 257 179 357 93 chr9 104014934 104015063 -20061109 - RSINE1 SINE B4 0 165 3 3 1378 1247 82 10 108 chr9 104015208 104015412 -20060760 + B2_Mm1t SINE B2 1 184 -9 3 1378 361 269 110 25 chr9 104016055 104016173 -20059999 + B1F2 SINE Alu 2 129 -20 3 1378 1128 116 0 0 chr9 104016178 104016350 -20059822 + (GGA)n Simple_repeat Simple_repeat 2 173 0 3 1378 306 0 0 0 chr9 104018095 104018129 -20058043 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1378 288 0 0 0 chr9 104018401 104018433 -20057739 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1378 547 207 17 8 chr9 104019566 104019683 -20056489 - PB1D9 SINE Alu -2 118 1 3 1378 720 132 30 44 chr9 104020286 104020421 -20055751 - B1_Mm SINE Alu -1 146 14 3 1378 420 245 58 52 chr9 104020421 104020441 -20055731 - ID_B1 SINE B4 -1 223 68 3 1378 827 311 79 33 chr9 104021630 104022151 -20054021 - L1MD1 LINE L1 -15 6227 5683 3 1378 236 296 134 34 chr9 104022650 104022888 -20053284 - L1MD1 LINE L1 -1215 4931 4670 3 1378 343 294 214 51 chr9 104023066 104023310 -20052862 + L1M5 LINE L1 5363 5657 -507 4 1378 228 35 0 0 chr9 104023310 104023339 -20052833 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1378 343 304 150 52 chr9 104023339 104023445 -20052727 + L1M5 LINE L1 5658 5770 -409 4 1378 456 19 0 0 chr9 104023659 104023712 -20052460 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1378 762 172 15 38 chr9 104023789 104023922 -20052250 - B3 SINE B2 -84 132 3 4 1378 257 303 0 0 chr9 104023936 104024002 -20052170 - ID_B1 SINE B4 -67 157 92 4 1378 945 220 62 0 chr9 104024257 104024466 -20051706 + RMER1B Other Other 2 223 -843 4 1378 2447 150 27 14 chr9 104024499 104024912 -20051260 + RMER1B Other Other 531 948 -118 4 1378 231 225 21 63 chr9 104024916 104025011 -20051161 + RMER4B LTR ERVK 457 547 -38 4 1378 371 91 0 0 chr9 104025011 104025066 -20051106 + RMER1A Other Other 975 1029 -1 4 1378 264 30 0 0 chr9 104025128 104025161 -20051011 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1378 185 154 26 0 chr9 104026729 104026768 -20049404 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1378 315 234 135 68 chr9 104027349 104027482 -20048690 + B1F1 SINE Alu 7 148 -1 5 1378 832 246 19 53 chr9 104027642 104027848 -20048324 - ID_B1 SINE B4 -23 201 3 5 1378 867 276 67 17 chr9 104027876 104028228 -20047944 - L1M2 LINE L1 -4261 2588 2254 5 1378 597 274 80 73 chr9 104029715 104030042 -20046130 + Charlie5 DNA MER1_type 2254 2582 -42 5 1378 454 283 35 76 chr9 104030777 104030949 -20045223 + RSINE1 SINE B4 1 165 0 5 1378 381 95 0 0 chr9 104030950 104031013 -20045159 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1378 784 208 183 38 chr9 104031555 104031790 -20044382 - B4A SINE B4 -23 269 1 5 1378 1279 27 0 0 chr9 104031949 104032095 -20044077 - B1_Mus2 SINE Alu 0 147 2 5 1378 1674 21 0 0 chr9 104032108 104032297 -20043875 - B2_Mm1a SINE B2 0 193 5 5 1378 207 311 75 28 chr9 104032685 104032791 -20043381 + L2 LINE L2 2960 3070 -349 5 1378 447 19 0 0 chr9 104033023 104033075 -20043097 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1378 270 207 0 0 chr9 104034177 104034235 -20041937 + CT-rich Low_complexity Low_complexity 1 58 0 6 1378 296 274 0 0 chr9 104034235 104034297 -20041875 - PB1D10 SINE Alu -16 101 40 6 1378 180 286 24 61 chr9 104034412 104034494 -20041678 - L2a LINE L2 -322 3104 3026 6 1378 890 42 8 0 chr9 104034611 104034730 -20041442 + (GA)n Simple_repeat Simple_repeat 1 120 0 6 1378 245 196 78 0 chr9 104034756 104034807 -20041365 - RSINE1 SINE B4 -109 56 2 6 1378 929 42 0 0 chr9 104035344 104035462 -20040710 + B1_Mus2 SINE Alu 30 147 0 6 1378 328 338 119 31 chr9 104035351 104035510 -20040662 + MT2B LTR ERVL 194 366 -235 6 1378 614 288 24 39 chr9 104035488 104035694 -20040478 - MER34 LTR ERV1 -318 224 22 6 1378 251 236 67 11 chr9 104035751 104035841 -20040331 - MER34B-int LTR ERV1 -3104 2252 2158 6 1378 473 284 5 71 chr9 104035991 104036188 -20039984 - B3A SINE B2 -14 184 1 6 1378 252 236 77 22 chr9 104036199 104036290 -20039882 - MER34B-int LTR ERV1 -3260 2096 2001 6 1378 1725 259 137 104 chr9 104036875 104037559 -20038613 + L1MA5 LINE L1 3244 4015 -2128 7 1378 280 160 80 0 chr9 104037559 104037609 -20038563 + ID SINE ID 2 55 -169 7 1378 1725 259 137 104 chr9 104037609 104037868 -20038304 + L1MA5 LINE L1 4016 4310 -1833 7 1378 1732 21 0 0 chr9 104037868 104038061 -20038111 - B2_Mm1a SINE B2 0 193 1 7 1378 1725 259 137 104 chr9 104038061 104038100 -20038072 + L1MA5 LINE L1 4311 4345 -1798 7 1378 650 213 0 81 chr9 104038100 104038248 -20037924 + B1_Mur1 SINE Alu 2 137 -12 7 1378 273 57 0 0 chr9 104038249 104038284 -20037888 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1378 1725 259 137 104 chr9 104038284 104038327 -20037845 + L1MA5 LINE L1 4346 4372 -1771 7 1378 216 0 0 0 chr9 104038327 104038351 -20037821 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1378 1182 44 0 0 chr9 104038351 104038488 -20037684 - B1_Mm SINE Alu -9 138 2 7 1378 1725 259 137 104 chr9 104038488 104038647 -20037525 + L1MA5 LINE L1 4373 4543 -1600 7 1378 1389 53 12 0 chr9 104038647 104038818 -20037354 + B2_Mm1t SINE B2 2 174 -19 7 1378 1725 259 137 104 chr9 104038818 104038975 -20037197 + L1MA5 LINE L1 4544 4685 -1458 7 1378 438 187 0 0 chr9 104039145 104039236 -20036936 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 1378 227 235 88 0 chr9 104039249 104039317 -20036855 + L1MA5 LINE L1 4926 4999 -1144 7 1378 293 253 151 71 chr9 104039313 104039551 -20036621 + L1MA5 LINE L1 5683 5939 -361 7 1378 422 257 153 51 chr9 104039733 104040008 -20036164 - Charlie5 DNA MER1_type -96 2528 2226 7 1378 615 214 25 38 chr9 104041572 104041732 -20034440 + RLTR14 LTR ERV1 225 382 0 8 1378 391 349 27 88 chr9 104041732 104041993 -20034179 + RLTR14-int LTR ERV1 2 246 -5071 8 1378 351 289 0 0 chr9 104042329 104042405 -20033767 - RSINE1 SINE B4 -86 79 4 8 1378 2830 134 39 7 chr9 104043190 104043632 -20032540 + RLTR11A2 LTR ERVK 1 456 -71 8 1378 349 100 16 16 chr9 104043728 104043789 -20032383 + RLTR11A2 LTR ERVK 464 524 -3 8 1378 283 271 14 0 chr9 104043789 104043855 -20032317 + RSINE1 SINE B4 99 165 0 8 1378 1418 80 27 0 chr9 104043900 104044087 -20032085 + B2_Mm1t SINE B2 1 192 -1 8 1378 22 0 0 0 chr9 104044524 104044546 -20031626 + AT_rich Low_complexity Low_complexity 1 22 0 8 1378 387 0 0 0 chr9 104045471 104045514 -20030658 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1378 248 336 26 100 chr9 104045563 104045794 -20030378 - B4A SINE B4 -12 280 67 8 1378 275 257 0 28 chr9 104045837 104045909 -20030263 + B4 SINE B4 2 71 -221 8 1378 541 169 34 4 chr9 104045920 104046167 -20030005 + (CA)n Simple_repeat Simple_repeat 1 254 0 8 1378 342 0 0 0 chr9 104047719 104047757 -20028415 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9 1378 474 292 13 91 chr9 104047874 104048104 -20028068 - B4A SINE B4 0 292 81 9 1378 357 309 0 0 chr9 104048250 104048344 -20027828 - B4A SINE B4 -197 95 2 9 1378 241 190 275 33 chr9 104048346 104048466 -20027706 - B1F SINE Alu 0 149 1 9 1378 1116 52 15 0 chr9 104048570 104048706 -20027466 + B1_Mus1 SINE Alu 1 138 -10 9 1378 609 268 31 25 chr9 104048740 104048901 -20027271 + RSINE1 SINE B4 4 165 0 9 1378 23 33 0 0 chr9 104048910 104048940 -20027232 + AT_rich Low_complexity Low_complexity 1 30 0 9 1378 1451 60 16 0 chr9 104050087 104050269 -20025903 - B2_Mm1t SINE B2 -8 185 1 9 1378 534 271 99 57 chr9 104050331 104050542 -20025630 + MTD LTR MaLR 18 237 -182 9 1378 319 178 122 0 chr9 104050535 104050625 -20025547 - Tigger7 DNA MER2_type -165 2326 2226 9 1378 1265 41 0 0 chr9 104050657 104050803 -20025369 - B1_Mm SINE Alu 0 147 2 9 1378 1261 164 27 0 chr9 104050806 104051026 -20025146 + URR1A DNA MER1_type 1 226 0 1 1378 264 337 78 18 chr9 104051026 104051192 -20024980 - Tigger7 DNA MER2_type -2094 397 222 9 1378 613 273 247 20 chr9 104051264 104051556 -20024616 + MTEa LTR MaLR 14 371 -8 1 1378 242 363 108 0 chr9 104051570 104051672 -20024500 - Tigger7 DNA MER2_type -2347 144 32 9 1378 451 225 47 62 chr9 104052111 104052239 -20023933 - Lx7 LINE L1 -318 7378 7253 1 1378 3158 228 142 23 chr9 104052280 104053129 -20023043 - Lx7 LINE L1 -566 7130 6189 1 1378 392 97 16 0 chr9 104053129 104053191 -20022981 + (TATG)n Simple_repeat Simple_repeat 3 65 0 1 1378 3158 228 142 23 chr9 104053191 104053265 -20022907 - Lx7 LINE L1 -1508 6188 6098 1 1378 401 250 0 0 chr9 104053267 104053347 -20022825 - ID4_ SINE ID -1 82 3 1 1378 22 35 0 0 chr9 104054988 104055017 -20021155 + AT_rich Low_complexity Low_complexity 1 29 0 1 1378 1469 240 26 46 chr9 104056217 104056566 -20019606 + MTE2a LTR MaLR 38 379 0 1 1378 927 105 60 0 chr9 104057185 104057318 -20018854 - B1_Mur4 SINE Alu -8 142 2 1 1378 261 0 0 0 chr9 104058099 104058128 -20018044 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 1 1378 192 77 0 0 chr9 104059700 104059726 -20016446 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 1 1378 238 273 15 29 chr9 104060633 104060701 -20015471 + MTE2a LTR MaLR 63 129 -250 1 1378 1078 231 110 12 chr9 104060689 104061017 -20015155 + MTE-int LTR MaLR 42 401 -1179 1 1378 744 281 182 23 chr9 104060999 104061433 -20014739 + MTE-int LTR MaLR 540 1042 -538 1 1378 609 290 224 11 chr9 104061447 104061813 -20014359 + MTE-int LTR MaLR 1137 1580 0 1 1378 601 205 102 6 chr9 104061994 104062151 -20014021 + MTE2a LTR MaLR 208 379 0 1 1378 437 292 27 7 chr9 104062175 104062323 -20013849 + RSINE1 SINE B4 2 152 -13 1 1378 1065 57 21 14 chr9 104063137 104063280 -20012892 - B1_Mus1 SINE Alu -2 146 3 1 1378 301 312 180 7 chr9 104063982 104064276 -20011896 - L1MA7 LINE L1 -47 6244 5900 1 1378 555 29 0 0 chr9 104065820 104065889 -20010283 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1378 359 215 400 32 chr9 104066181 104066331 -20009841 - B3 SINE B2 -11 205 1 1 1378 21 0 0 0 chr9 104066337 104066358 -20009814 + AT_rich Low_complexity Low_complexity 1 21 0 1 1378 357 125 0 0 chr9 104066999 104067055 -20009117 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 1 1378 33 0 0 0 chr9 104067974 104068007 -20008165 + GC_rich Low_complexity Low_complexity 1 33 0 1 1378 451 246 8 33 chr9 104068441 104068563 -20007609 + B1F SINE Alu 1 119 -30 1 1378 373 298 48 28 chr9 104068948 104069093 -20007079 - B4A SINE B4 -143 149 2 1 1378 328 232 49 0 chr9 104069539 104069621 -20006551 - PB1 SINE Alu -13 114 29 1 1378 1272 34 0 0 chr9 104070474 104070621 -20005551 + B1_Mm SINE Alu 1 147 0 1 1378 970 194 26 0 chr9 104070658 104070849 -20005323 - B3 SINE B2 -11 205 10 1 172 262 215 0 0 chr9 104071151 104071216 -20004956 + A-rich Low_complexity Low_complexity 1 65 0 1 1379 269 172 0 15 chr9 104071544 104071609 -20004563 + CT-rich Low_complexity Low_complexity 2 65 0 1 1379 474 174 23 0 chr9 104072215 104072301 -20003871 - PB1D9 SINE Alu 0 120 33 1 1379 739 245 62 45 chr9 104073556 104073800 -20002372 + Lx2B LINE L1 6753 7000 0 1 1379 446 207 190 0 chr9 104073812 104073928 -20002244 + B1_Mus1 SINE Alu 2 139 -9 1 1379 443 229 10 10 chr9 104077348 104077445 -19998727 + PB1D10 SINE Alu 10 106 -11 1 1379 944 104 225 0 chr9 104077620 104077802 -19998370 - URR1A DNA MER1_type -3 223 1 1 1379 209 208 0 0 chr9 104078096 104078144 -19998028 + A-rich Low_complexity Low_complexity 1 48 0 1 1379 366 23 0 0 chr9 104078441 104078484 -19997688 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1379 258 259 70 12 chr9 104078739 104078825 -19997347 - B3 SINE B2 -125 91 1 1 1379 420 165 23 12 chr9 104079656 104079742 -19996430 + ORR1D1 LTR MaLR 1 87 -287 1 1379 227 93 23 0 chr9 104080127 104080170 -19996002 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1379 215 253 98 37 chr9 104080286 104080368 -19995804 - PB1D7 SINE Alu -2 118 32 1 1379 1299 105 15 31 chr9 104080731 104080927 -19995245 + B2_Mm2 SINE B2 2 194 -1 1 1379 180 0 0 0 chr9 104081306 104081326 -19994846 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1379 2433 93 9 6 chr9 104081566 104081892 -19994280 + ORR1A2 LTR MaLR 1 327 0 1 1379 182 136 23 0 chr9 104081972 104082016 -19994156 + A-rich Low_complexity Low_complexity 4 48 0 1 1379 240 258 151 0 chr9 104083617 104083710 -19992462 + MER58C DNA MER1_type 1 107 -108 1 1379 906 217 44 10 chr9 104085609 104085814 -19990358 - B3 SINE B2 0 216 5 1 1379 485 310 88 5 chr9 104087318 104087522 -19988650 + ID_B1 SINE B4 1 221 -3 1 1379 182 333 72 40 chr9 104087798 104087923 -19988249 - MIRb SINE MIR -23 245 117 1 1379 773 173 60 0 chr9 104088300 104088433 -19987739 + B1_Mus1 SINE Alu 1 141 -7 1 1379 408 40 0 0 chr9 104088437 104088487 -19987685 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 1 1379 361 137 0 0 chr9 104088487 104088538 -19987634 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1379 959 155 6 0 chr9 104088539 104088713 -19987459 + GA-rich Low_complexity Low_complexity 3 177 0 1 1379 189 0 0 0 chr9 104088715 104088736 -19987436 + (CAGC)n Simple_repeat Simple_repeat 2 22 0 1 1379 24 85 0 0 chr9 104089340 104089399 -19986773 + AT_rich Low_complexity Low_complexity 1 59 0 1 1379 186 347 58 25 chr9 104089690 104089811 -19986361 + L2 LINE L2 187 311 -3108 1 1379 31 44 0 0 chr9 104090027 104090072 -19986100 + AT_rich Low_complexity Low_complexity 1 45 0 1 1379 227 238 83 48 chr9 104090433 104090517 -19985655 - PB1D10 SINE Alu -21 96 10 1 1379 306 301 48 0 chr9 104091172 104091275 -19984897 - PB1 SINE Alu -12 115 8 1 1379 22 70 0 0 chr9 104091915 104091958 -19984214 + AT_rich Low_complexity Low_complexity 1 43 0 1 1379 477 214 8 71 chr9 104092906 104093032 -19983140 + PB1D9 SINE Alu 2 119 -1 1 1379 360 0 0 0 chr9 104093368 104093408 -19982764 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1379 301 237 76 76 chr9 104093426 104093531 -19982641 + B4A SINE B4 188 292 0 1 1379 23 0 0 0 chr9 104094671 104094694 -19981478 + AT_rich Low_complexity Low_complexity 1 23 0 1 1379 397 180 39 39 chr9 104096391 104096495 -19979677 + B1F2 SINE Alu 1 104 -45 1 1379 2023 147 84 3 chr9 104096921 104097276 -19978896 + ORR1C2 LTR MaLR 1 384 0 1 1379 288 0 0 0 chr9 104097636 104097668 -19978504 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1 1379 881 245 29 0 chr9 104097987 104098195 -19977977 + B3 SINE B2 3 216 0 1 1379 630 229 40 55 chr9 104100561 104100760 -19975412 + B3A SINE B2 1 196 -2 1 1379 22 0 0 0 chr9 104101848 104101870 -19974302 + AT_rich Low_complexity Low_complexity 1 22 0 1 1379 292 282 92 25 chr9 104104667 104104787 -19971385 + B1F1 SINE Alu 6 133 -16 1 1379 904 143 0 45 chr9 104105927 104106081 -19970091 - B1_Mus2 SINE Alu 0 147 1 1 1379 230 296 0 53 chr9 104106117 104106192 -19969980 - B4A SINE B4 0 292 222 1 1379 465 221 62 0 chr9 104106318 104106431 -19969741 - B3 SINE B2 -5 211 92 1 1379 1315 248 174 84 chr9 104107075 104107226 -19968946 + Lx8 LINE L1 6640 6798 -675 1 1379 596 210 98 93 chr9 104107226 104107420 -19968752 + B3A SINE B2 1 195 -3 1 1379 1315 248 174 84 chr9 104107420 104107849 -19968323 + Lx8 LINE L1 6799 7272 -201 1 1379 292 186 64 110 chr9 104107876 104107985 -19968187 + MT2B LTR ERVL 161 264 -337 1 1379 555 115 52 0 chr9 104107893 104107989 -19968183 + B1_Mur4 SINE Alu 19 119 -31 1 1379 367 315 116 82 chr9 104108158 104108476 -19967696 - L2a LINE L2 -162 3264 2936 1 1379 300 279 13 0 chr9 104108607 104108686 -19967486 - ID4_ SINE ID 0 83 4 1 1379 1698 159 147 3 chr9 104108950 104109310 -19966862 + MTC LTR MaLR 2 413 -8 1 1379 1159 198 49 16 chr9 104111107 104111353 -19964819 - RMER1B Other Other -11 1055 802 1 1379 249 267 83 65 chr9 104112890 104112998 -19963174 + PB1D10 SINE Alu 7 116 -1 1 1379 23 33 0 0 chr9 104113445 104113475 -19962697 + AT_rich Low_complexity Low_complexity 1 30 0 1 1379 193 288 0 0 chr9 104114022 104114081 -19962091 - MIRc SINE MIR -82 186 128 1 1379 350 163 81 10 chr9 104114887 104114986 -19961186 - Lx9 LINE L1 -20 7624 7519 1 1379 414 100 0 0 chr9 104115010 104115070 -19961102 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1379 228 211 26 13 chr9 104115562 104115639 -19960533 + (TCTG)n Simple_repeat Simple_repeat 2 79 0 1 1379 762 168 46 0 chr9 104115640 104115771 -19960401 - B1_Mur2 SINE Alu -12 137 1 1 1379 267 282 123 78 chr9 104116795 104116949 -19959223 - RSINE1 SINE B4 0 165 5 1 1379 1010 112 6 17 chr9 104117315 104117496 -19958676 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 1 1379 777 70 0 0 chr9 104117496 104117606 -19958566 + (TC)n Simple_repeat Simple_repeat 1 110 0 1 1379 1363 44 66 0 chr9 104118156 104118337 -19957835 - B2_Mm2 SINE B2 -2 193 1 1 1379 194 159 45 0 chr9 104118380 104118424 -19957748 + GA-rich Low_complexity Low_complexity 1 46 0 1 1379 597 250 97 0 chr9 104119409 104119605 -19956567 - B3 SINE B2 0 216 2 1 1379 265 203 0 59 chr9 104120712 104120780 -19955392 + ID2 SINE ID 4 67 -16 1 1379 233 300 0 0 chr9 104121301 104121334 -19954838 + polypurine Low_complexity Low_complexity 1 33 0 1 1379 207 0 0 0 chr9 104121334 104121357 -19954815 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1379 233 300 0 0 chr9 104121357 104121383 -19954789 + polypurine Low_complexity Low_complexity 34 59 0 1 1379 889 209 28 28 chr9 104121400 104121612 -19954560 + B3 SINE B2 2 213 -3 1 1379 1199 55 0 7 chr9 104121797 104121944 -19954228 + B1_Mus1 SINE Alu 2 147 -1 1 1379 531 0 0 0 chr9 104122484 104122543 -19953629 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1379 216 86 0 0 chr9 104124185 104124220 -19951952 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1379 1147 51 0 0 chr9 104124220 104124358 -19951814 - B1_Mus1 SINE Alu -9 139 2 2 1379 26 0 0 0 chr9 104124367 104124393 -19951779 + AT_rich Low_complexity Low_complexity 1 26 0 2 1379 38536 31 0 0 chr9 104124393 104130605 -19945567 - L1Md_T LINE L1 0 6585 278 2 1379 490 242 56 8 chr9 104132747 104132872 -19943300 - ID_B1 SINE B4 -7 217 87 2 1379 348 274 132 12 chr9 104134203 104134369 -19941803 - MER2 DNA MER2_type -116 229 44 2 1379 339 203 511 28 chr9 104135632 104135814 -19940358 - B4 SINE B4 -18 274 5 2 1379 304 283 11 0 chr9 104136359 104136451 -19939721 + PB1 SINE Alu 15 107 -20 2 1379 761 260 72 29 chr9 104137485 104137762 -19938410 - B4A SINE B4 0 292 4 2 1379 599 273 0 70 chr9 104139031 104139232 -19936940 - B3 SINE B2 -28 188 2 2 1379 23 54 0 0 chr9 104141009 104141046 -19935126 + AT_rich Low_complexity Low_complexity 1 37 0 2 1379 886 162 203 16 chr9 104141132 104141314 -19934858 + B3 SINE B2 1 216 0 2 1379 287 98 39 0 chr9 104141334 104141385 -19934787 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 2 1379 1200 69 84 17 chr9 104142360 104142538 -19933634 + B2_Mm2 SINE B2 2 191 -4 2 1379 2338 306 72 24 chr9 104142651 104143607 -19932565 + Lx8 LINE L1 6348 7349 -124 2 1379 1076 30 53 0 chr9 104143690 104143822 -19932350 + B1_Mus2 SINE Alu 1 139 -8 2 1379 312 0 20 40 chr9 104143822 104143872 -19932300 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1379 216 309 0 0 chr9 104144234 104144289 -19931883 + (CACG)n Simple_repeat Simple_repeat 1 55 0 2 1379 1226 283 156 44 chr9 104144494 104145990 -19930182 - L1MA6 LINE L1 -32 6268 4612 2 1379 222 91 0 0 chr9 104146799 104146832 -19929340 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1379 1128 58 0 0 chr9 104146914 104147052 -19929120 + B1_Mus1 SINE Alu 2 139 -9 2 1379 28 0 0 0 chr9 104147064 104147092 -19929080 + AT_rich Low_complexity Low_complexity 1 28 0 2 1379 666 266 261 35 chr9 104147310 104147930 -19928242 + L1M4 LINE L1 4574 5333 -813 2 1379 30 27 0 0 chr9 104148517 104148554 -19927618 + AT_rich Low_complexity Low_complexity 1 37 0 2 1379 1197 68 0 0 chr9 104148710 104148857 -19927315 + B1_Mus1 SINE Alu 2 148 0 2 1379 423 98 0 0 chr9 104148860 104148921 -19927251 + (GGA)n Simple_repeat Simple_repeat 2 62 0 2 1379 648 207 0 8 chr9 104149792 104149909 -19926263 + PB1D9 SINE Alu 1 116 -4 2 1379 228 257 53 26 chr9 104150034 104150110 -19926062 + Charlie10 DNA MER1_type 39 116 -2706 2 1379 294 183 269 0 chr9 104150632 104150725 -19925447 + B1_Mus2 SINE Alu 29 146 -1 2 1379 321 277 101 0 chr9 104150837 104150985 -19925187 - L1M4 LINE L1 -361 5817 5655 2 1379 207 0 0 0 chr9 104151811 104151834 -19924338 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1379 350 195 133 0 chr9 104152092 104152205 -19923967 + B1F2 SINE Alu 14 141 -8 2 1379 412 196 7 213 chr9 104152605 104152741 -19923431 + B3 SINE B2 1 108 -108 2 1379 233 328 36 10 chr9 104153212 104153339 -19922833 - MIRc SINE MIR -120 148 16 2 1379 309 206 27 14 chr9 104154009 104154083 -19922089 + B1F1 SINE Alu 35 109 -40 2 1379 326 286 80 16 chr9 104154345 104154482 -19921690 + MIRb SINE MIR 67 218 -44 2 1379 551 288 216 23 chr9 104154749 104155189 -19920983 + Tigger7 DNA MER2_type 90 614 -1877 2 1379 282 287 80 36 chr9 104155879 104155991 -19920181 + PB1D7 SINE Alu 4 120 0 2 1379 474 61 0 0 chr9 104156200 104156266 -19919906 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1379 228 35 0 0 chr9 104156737 104156766 -19919406 + (GCTG)n Simple_repeat Simple_repeat 4 32 0 2 1379 382 216 10 49 chr9 104157318 104157420 -19918752 - PB1 SINE Alu -2 125 28 2 1379 673 297 52 31 chr9 104157898 104158127 -19918045 - B4 SINE B4 -15 277 44 2 1379 26 0 0 0 chr9 104158330 104158356 -19917816 + AT_rich Low_complexity Low_complexity 1 26 0 2 1379 636 271 0 113 chr9 104159730 104159782 -19916390 + B3A SINE B2 1 51 -147 2 1379 1256 160 23 9 chr9 104159782 104160003 -19916169 - URR1B DNA MER1_type -1 224 1 2 1379 636 271 0 113 chr9 104160003 104160162 -19916010 + B3A SINE B2 52 188 -10 2 1379 307 321 99 21 chr9 104160324 104160515 -19915657 + MER20B DNA MER1_type 399 604 -179 2 1379 372 274 207 30 chr9 104160636 104160873 -19915299 + Tigger9b DNA MER2_type 89 367 -257 2 1379 2107 124 11 58 chr9 104161132 104161508 -19914664 + RLTR15 LTR ERVK 2 359 0 2 1379 350 224 187 10 chr9 104161768 104161900 -19914272 - B3A SINE B2 -50 145 6 2 1379 332 291 134 24 chr9 104162160 104162413 -19913759 - L1MCc LINE L1 -5020 1403 1123 2 1379 355 255 36 9 chr9 104163202 104163313 -19912859 + RSINE1 SINE B4 48 161 -4 2 1379 192 77 0 0 chr9 104164586 104164612 -19911560 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1379 190 340 93 26 chr9 104166619 104166770 -19909402 - MIRm SINE MIR -114 162 2 2 1379 567 0 0 0 chr9 104166963 104167026 -19909146 + (TCC)n Simple_repeat Simple_repeat 2 64 0 2 1379 244 225 0 82 chr9 104167688 104167785 -19908387 - PB1D10 SINE Alu -2 115 27 2 1379 832 239 48 14 chr9 104167801 104168009 -19908163 - B3 SINE B2 -1 215 1 2 1379 450 217 176 4 chr9 104168159 104168316 -19907856 + ORR1D2 LTR MaLR 1 186 -173 2 1379 788 226 130 56 chr9 104168408 104168419 -19907753 + ORR1D2 LTR MaLR 139 145 -225 2 1379 315 0 0 0 chr9 104168419 104168454 -19907718 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1379 788 226 130 56 chr9 104168454 104168658 -19907514 + ORR1D2 LTR MaLR 146 370 0 2 1379 1246 208 70 58 chr9 104169029 104169341 -19906831 + MTE2b LTR MaLR 64 379 0 2 1379 421 306 41 0 chr9 104169790 104169911 -19906261 - B4A SINE B4 -161 131 6 2 1379 846 257 30 0 chr9 104169939 104170141 -19906031 - B3 SINE B2 -1 215 8 2 1379 288 0 0 0 chr9 104170165 104170197 -19905975 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1379 849 184 135 16 chr9 104170573 104170766 -19905406 - B3 SINE B2 0 216 1 2 1379 6754 32 0 0 chr9 104170848 104171627 -19904545 - L1Md_F2 LINE L1 0 6582 5804 2 1379 210 118 0 0 chr9 104172259 104172293 -19903879 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1379 1420 232 133 8 chr9 104172301 104172661 -19903511 + MTD LTR MaLR 1 405 -14 2 1379 1181 220 95 100 chr9 104172987 104173356 -19902816 + ORR1D2 LTR MaLR 1 367 -3 2 1379 359 253 19 78 chr9 104173628 104173754 -19902418 + B1F SINE Alu 3 126 -23 2 1379 854 220 77 22 chr9 104173745 104173926 -19902246 + B3 SINE B2 26 216 0 2 1379 330 26 0 0 chr9 104174412 104174451 -19901721 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1379 931 146 7 0 chr9 104175046 104175183 -19900989 - B1_Mur4 SINE Alu -1 149 12 2 1379 474 284 110 6 chr9 104175977 104176140 -19900032 + B3A SINE B2 1 180 -18 2 1379 977 245 60 39 chr9 104176208 104176492 -19899680 + B4A SINE B4 2 291 -1 2 1379 264 321 45 8 chr9 104176676 104176808 -19899364 - L1M5 LINE L1 -297 5827 5691 2 1379 518 248 86 58 chr9 104177030 104177308 -19898864 - B4 SINE B4 -2 290 5 2 1379 530 229 8 17 chr9 104177412 104177532 -19898640 - RSINE1 SINE B4 0 165 47 2 1379 401 309 14 75 chr9 104177839 104177986 -19898186 + ID_B1 SINE B4 78 215 -9 2 1379 202 184 18 109 chr9 104178037 104178092 -19898080 + MER5A DNA MER1_type 7 56 -133 2 1379 245 352 71 52 chr9 104178198 104178444 -19897728 + MIR SINE MIR 21 267 -1 2 1379 947 178 10 30 chr9 104178593 104178604 -19897568 + MTC LTR MaLR 9 18 -403 2 1379 180 0 0 0 chr9 104178604 104178624 -19897548 + (GTTTG)n Simple_repeat Simple_repeat 5 24 0 2 1379 947 199 12 42 chr9 104178624 104178849 -19897323 + MTC LTR MaLR 19 228 -172 2 1379 486 209 6 32 chr9 104178849 104178912 -19897260 + polypurine Low_complexity Low_complexity 4 66 0 2 1379 1087 50 50 0 chr9 104178912 104179052 -19897120 + B1_Mm SINE Alu 1 147 0 2 1379 486 209 6 32 chr9 104179052 104179146 -19897026 + polypurine Low_complexity Low_complexity 67 156 0 2 1379 528 232 104 0 chr9 104179146 104179271 -19896901 + MTC LTR MaLR 197 334 -85 2 1379 246 175 246 0 chr9 104179343 104179400 -19896772 + MTC LTR MaLR 337 407 -12 2 1379 1209 27 0 14 chr9 104179767 104179915 -19896257 - B1_Mus2 SINE Alu 0 147 2 2 1379 466 342 94 22 chr9 104180332 104180652 -19895520 - Tigger5 DNA MER2_type -892 1514 1172 2 1379 1726 222 116 10 chr9 104181325 104181729 -19894443 - Lx9 LINE L1 -892 6752 6306 2 1379 977 223 115 16 chr9 104181809 104182114 -19894058 + Lx9 LINE L1 7301 7635 -9 2 1379 329 331 27 14 chr9 104182123 104182270 -19893902 + L1MD2 LINE L1 5879 6027 -332 2 1379 2239 84 0 19 chr9 104182460 104182774 -19893398 + Lx LINE L1 6342 6649 -5 2 1379 352 226 86 0 chr9 104183782 104183875 -19892297 - MTEb LTR MaLR 0 379 279 2 1379 763 214 288 28 chr9 104183917 104184238 -19891934 - MTD LTR MaLR -11 408 4 2 1379 527 311 78 11 chr9 104184248 104184407 -19891765 - ORR1E LTR MaLR -168 191 27 2 1379 195 42 0 0 chr9 104184407 104184431 -19891741 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1379 527 311 78 11 chr9 104184431 104184450 -19891722 - ORR1E LTR MaLR -333 26 3 2 1379 690 242 0 7 chr9 104185395 104185545 -19890627 + B1_Mur1 SINE Alu 1 149 0 2 1379 318 26 0 0 chr9 104185617 104185656 -19890516 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1379 318 281 77 81 chr9 104185700 104185800 -19890372 - L1M2 LINE L1 -2822 3321 3213 2 1379 1043 96 14 14 chr9 104185800 104185948 -19890224 - B1_Mur4 SINE Alu -2 148 1 2 1379 318 281 77 81 chr9 104185948 104186056 -19890116 - L1M2 LINE L1 -2931 3212 3114 2 1379 618 55 0 0 chr9 104186141 104186232 -19889940 - L1_Mus3 LINE L1 -2 6636 6546 2 1379 1241 87 60 0 chr9 104186290 104186473 -19889699 - L1_Mus3 LINE L1 -4 6634 6441 2 1379 22 0 0 0 chr9 104187719 104187741 -19888431 + AT_rich Low_complexity Low_complexity 1 22 0 2 1379 462 318 68 0 chr9 104187745 104187937 -19888235 - MIR SINE MIR 0 262 58 3 1379 235 248 215 19 chr9 104188005 104188112 -19888060 - MLT1A1 LTR MaLR -12 396 269 3 1379 1188 264 39 57 chr9 104188269 104188655 -19887517 - MTE2b LTR MaLR 0 379 1 3 1379 282 302 90 40 chr9 104188662 104188762 -19887410 - MLT1A1 LTR MaLR -302 106 2 3 1379 233 247 11 172 chr9 104188884 104188977 -19887195 + ID_B1 SINE B4 80 157 -67 3 1379 211 319 29 0 chr9 104189021 104189090 -19887082 + RSINE1 SINE B4 82 152 -13 3 1379 414 0 0 0 chr9 104189100 104189146 -19887026 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1379 1345 74 0 6 chr9 104189428 104189604 -19886568 - B2_Mm2 SINE B2 -19 176 2 3 1379 4232 103 2 7 chr9 104189960 104190547 -19885625 + MT2B2 LTR ERVL 1 584 0 3 1379 389 215 25 0 chr9 104190665 104190744 -19885428 - ID4_ SINE ID -1 82 2 3 1379 424 287 182 30 chr9 104190857 104191126 -19885046 + MER33 DNA MER1_type 6 315 -9 3 1379 746 289 78 8 chr9 104191916 104192174 -19883998 + B4A SINE B4 1 276 -16 3 1379 189 94 0 0 chr9 104193303 104193335 -19882837 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1379 278 238 84 84 chr9 104194013 104194192 -19881980 + YREP_Mm Unknown Unknown 129 307 -1505 3 1379 656 243 9 34 chr9 104194034 104194204 -19881968 - ID_B1 SINE B4 -46 246 81 3 1379 1155 68 7 0 chr9 104194897 104195043 -19881129 - B1_Mus1 SINE Alu 0 148 2 3 1379 339 260 40 40 chr9 104195067 104195167 -19881005 + L2a LINE L2 2289 2388 -1031 3 1379 957 295 73 51 chr9 104195188 104195559 -19880613 + Tigger7 DNA MER2_type 2 380 -2111 3 1379 495 285 50 12 chr9 104195620 104195780 -19880392 - ID_B1 SINE B4 -2 222 57 3 1379 568 272 53 6 chr9 104195812 104195982 -19880190 + Tigger7 DNA MER2_type 2312 2489 -2 3 1379 747 352 184 37 chr9 104195991 104196636 -19879536 + L2a LINE L2 2418 3157 -269 3 1379 876 274 9 23 chr9 104196864 104197084 -19879088 + ID_B1 SINE B4 6 222 -2 3 1379 298 301 53 11 chr9 104197407 104197501 -19878671 + B1F2 SINE Alu 2 99 -50 3 1379 255 61 0 0 chr9 104198659 104198692 -19877480 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 3 1379 338 263 0 0 chr9 104198724 104198809 -19877363 - ID4_ SINE ID -61 91 7 3 1379 320 167 106 0 chr9 104198811 104198877 -19877295 - PB1D10 SINE Alu -44 73 1 3 1379 24 0 0 0 chr9 104198893 104198917 -19877255 + AT_rich Low_complexity Low_complexity 1 24 0 3 1379 520 252 223 0 chr9 104199109 104199248 -19876924 - ID_B1 SINE B4 -53 171 2 3 1379 288 363 21 47 chr9 104199411 104199602 -19876570 + L2b LINE L2 2979 3164 -211 3 1379 1357 49 43 5 chr9 104199706 104199890 -19876282 - B2_Mm2 SINE B2 -3 192 2 3 1379 192 196 65 0 chr9 104199994 104200040 -19876132 + L3b LINE CR1 203 251 -231 3 1379 266 339 76 25 chr9 104200921 104201040 -19875132 - MER63D DNA AcHobo -664 397 274 3 1379 246 239 165 52 chr9 104201338 104201435 -19874737 - L2a LINE L2 -15 3411 3304 3 172 258 81 0 0 chr9 104202239 104202276 -19873896 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1380 846 123 1 3 chr9 104203604 104203738 -19872434 - L1_Mus3 LINE L1 -461 6175 6066 3 1380 3630 58 4 15 chr9 104203738 104204213 -19871959 + L1_Mus3 LINE L1 6169 6638 0 3 1380 827 225 10 41 chr9 104204265 104204460 -19871712 - B3A SINE B2 -5 193 5 3 1380 25 0 0 0 chr9 104204476 104204501 -19871671 + AT_rich Low_complexity Low_complexity 1 25 0 3 1380 1019 157 21 21 chr9 104204655 104204844 -19871328 + URR1B DNA MER1_type 7 195 -30 3 1380 581 335 25 18 chr9 104205453 104205736 -19870436 - B4A SINE B4 -6 286 2 3 1380 1521 68 16 0 chr9 104206385 104206577 -19869595 + B2_Mm2 SINE B2 1 195 0 3 1380 285 278 50 40 chr9 104206671 104206772 -19869400 + PB1D10 SINE Alu 12 113 -4 3 1380 396 263 95 29 chr9 104208621 104208758 -19867414 + B1F1 SINE Alu 2 147 -2 3 1380 288 0 0 0 chr9 104208921 104208953 -19867219 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1380 235 287 22 54 chr9 104208953 104209035 -19867137 + Lx8 LINE L1 7387 7468 -5 3 1380 219 189 0 19 chr9 104209039 104209093 -19867079 + A-rich Low_complexity Low_complexity 5 57 0 3 1380 382 232 11 34 chr9 104209093 104209182 -19866990 + B1_Mur2 SINE Alu 62 148 -1 3 1380 230 242 226 0 chr9 104209933 104209995 -19866177 + ID SINE ID 1 76 -148 3 1380 378 0 0 0 chr9 104210007 104210049 -19866123 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1380 414 0 0 0 chr9 104210151 104210197 -19865975 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1380 182 65 65 0 chr9 104210777 104210808 -19865364 + (TCCC)n Simple_repeat Simple_repeat 1 33 0 3 1380 584 254 39 84 chr9 104210824 104210881 -19865291 - B1F SINE Alu 0 149 89 3 1380 996 179 7 179 chr9 104210881 104211154 -19865018 - URR1A DNA MER1_type 0 226 1 3 1380 584 254 39 84 chr9 104211154 104211251 -19864921 - B1F SINE Alu -61 88 2 3 1380 243 293 39 131 chr9 104211251 104211334 -19864838 - B4 SINE B4 -210 82 14 3 1380 237 65 0 0 chr9 104212158 104212189 -19863983 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1380 1225 34 0 13 chr9 104212189 104212338 -19863834 - B1_Mus2 SINE Alu 0 147 1 3 1380 225 315 21 42 chr9 104212407 104212503 -19863669 - RMER12 LTR ERVK -292 1030 937 3 1380 459 0 0 0 chr9 104212598 104212649 -19863523 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1380 199 354 13 0 chr9 104213557 104213636 -19862536 - MIR SINE MIR -131 131 52 3 1380 495 314 49 25 chr9 104213758 104213921 -19862251 - MER58B DNA MER1_type 0 341 175 3 1380 296 262 0 0 chr9 104214660 104214721 -19861451 - MER58B DNA MER1_type -284 57 2 3 1380 2005 73 143 0 chr9 104214782 104215068 -19861104 + ORR1A2 LTR MaLR 1 327 0 3 1380 446 124 11 0 chr9 104215259 104215348 -19860824 + (TC)n Simple_repeat Simple_repeat 2 91 0 3 1380 384 22 0 0 chr9 104215348 104215393 -19860779 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1380 775 206 22 0 chr9 104215448 104215584 -19860588 + B1_Mur1 SINE Alu 1 139 -10 3 1380 360 0 0 0 chr9 104215584 104215624 -19860548 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3 1380 1588 52 0 0 chr9 104215854 104216045 -19860127 - B2_Mm1a SINE B2 -2 191 1 3 1380 220 391 11 22 chr9 104216525 104216614 -19859558 - MIRb SINE MIR -156 112 25 3 1380 906 225 14 34 chr9 104216877 104217084 -19859088 + MTD LTR MaLR 54 256 -163 3 1380 233 210 0 16 chr9 104217396 104217459 -19858713 + GA-rich Low_complexity Low_complexity 1 62 0 3 1380 524 170 9 0 chr9 104217677 104217783 -19858389 + GA-rich Low_complexity Low_complexity 3 109 0 3 1380 659 303 44 35 chr9 104219117 104219346 -19856826 + B4A SINE B4 58 288 -4 3 1380 423 0 0 0 chr9 104219361 104219408 -19856764 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1380 368 332 149 23 chr9 104219483 104219785 -19856387 + L1MD LINE L1 3506 3845 -2301 3 1380 1508 58 16 0 chr9 104219880 104220068 -19856104 - B2_Mm2 SINE B2 -3 192 2 3 1380 592 231 15 15 chr9 104220077 104220213 -19855959 - B1F2 SINE Alu -8 141 6 3 1380 303 333 41 28 chr9 104220307 104220452 -19855720 + L1M5 LINE L1 4069 4215 -1931 3 1380 842 241 34 5 chr9 104220491 104220695 -19855477 + B3 SINE B2 3 212 -4 3 1380 694 196 36 0 chr9 104221124 104221262 -19854910 + B1_Mur3 SINE Alu 1 143 -6 3 1380 189 0 0 0 chr9 104221600 104221621 -19854551 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1380 1229 61 0 0 chr9 104221621 104221768 -19854404 + B1_Mus1 SINE Alu 1 147 -1 3 1380 21 36 0 0 chr9 104222027 104222055 -19854117 + AT_rich Low_complexity Low_complexity 1 28 0 3 1380 250 324 22 45 chr9 104225072 104225224 -19850948 + MLT1A0 LTR MaLR 214 405 -3 3 1380 228 204 18 18 chr9 104225440 104225495 -19850677 - MER5B DNA MER1_type -7 171 117 3 1380 852 212 93 0 chr9 104225497 104225690 -19850482 + B3 SINE B2 1 211 -5 3 1380 277 304 79 16 chr9 104225690 104225817 -19850355 - MER5B DNA MER1_type -41 137 3 3 1380 1284 0 19 0 chr9 104226045 104226201 -19849971 + (TG)n Simple_repeat Simple_repeat 2 160 0 3 1380 266 268 50 20 chr9 104227360 104227459 -19848713 + L3 LINE CR1 4366 4467 -22 3 1380 286 310 23 0 chr9 104227534 104227621 -19848551 + MER5A DNA MER1_type 9 97 -92 3 1380 1142 68 14 0 chr9 104227664 104227811 -19848361 + B1_Mur4 SINE Alu 2 150 0 3 1380 886 200 73 29 chr9 104227815 104228021 -19848151 - B3 SINE B2 0 216 2 3 1380 268 333 81 60 chr9 104228084 104228269 -19847903 - MER5A DNA MER1_type 0 189 1 3 1380 464 206 0 10 chr9 104229011 104229109 -19847063 + ID_B1 SINE B4 94 190 -34 3 1380 344 232 14 0 chr9 104229109 104229178 -19846994 + ID_B1 SINE B4 150 219 -5 3 1380 355 252 30 89 chr9 104229109 104229136 -19847036 + B1F SINE Alu 32 127 -22 3 1380 305 353 12 49 chr9 104229395 104229559 -19846613 - MER5B DNA MER1_type -12 166 9 3 1380 1340 91 0 16 chr9 104229737 104229927 -19846245 + B2_Mm2 SINE B2 3 189 -6 3 1380 498 33 0 0 chr9 104231329 104231389 -19844783 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1380 430 273 105 8 chr9 104231742 104231875 -19844297 - B1F SINE Alu -1 148 3 3 1380 280 207 31 94 chr9 104232082 104232178 -19843994 - PB1D10 SINE Alu -5 112 23 3 1380 865 267 40 104 chr9 104232739 104233086 -19843086 - MTEa LTR MaLR -12 367 43 3 1380 223 273 30 15 chr9 104233493 104233560 -19842612 - B4A SINE B4 -224 68 1 3 1380 229 298 131 3 chr9 104235276 104235447 -19840725 - MIR SINE MIR -51 217 23 3 1380 1043 80 7 0 chr9 104236638 104236775 -19839397 + B1_Mus1 SINE Alu 5 142 -6 3 1380 378 0 0 0 chr9 104236781 104236823 -19839349 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 1380 621 72 0 0 chr9 104236832 104236915 -19839257 + (CCAA)n Simple_repeat Simple_repeat 1 83 0 3 1380 458 289 78 8 chr9 104236953 104237082 -19839090 + RSINE1 SINE B4 12 149 -16 4 1380 211 214 0 23 chr9 104237154 104237197 -19838975 + ID4_ SINE ID 41 82 -1 4 1380 213 39 0 0 chr9 104237569 104237595 -19838577 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1380 451 154 139 37 chr9 104237605 104237713 -19838459 - ID_B1 SINE B4 0 224 106 4 1380 246 178 0 0 chr9 104237734 104237779 -19838393 - B1F SINE Alu -44 105 61 4 1380 218 147 0 0 chr9 104237764 104237798 -19838374 - PB1D9 SINE Alu -86 34 1 4 1380 1173 68 0 7 chr9 104237810 104237957 -19838215 - B1_Mus2 SINE Alu 0 147 2 4 1380 1198 43 0 0 chr9 104238005 104238145 -19838027 + B1_Mus1 SINE Alu 1 140 -8 4 1380 240 86 0 0 chr9 104238145 104238180 -19837992 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1380 1451 59 11 5 chr9 104239098 104239284 -19836888 - B2_Mm2 SINE B2 -7 188 2 4 1380 697 262 42 31 chr9 104241471 104241688 -19834484 + ORR1E LTR MaLR 3 203 -164 4 1380 258 32 0 0 chr9 104242200 104242231 -19833941 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1380 574 238 89 120 chr9 104242752 104242915 -19833257 + B3A SINE B2 2 164 -34 4 1380 180 97 0 0 chr9 104242915 104242946 -19833226 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 1380 333 238 89 120 chr9 104242946 104242973 -19833199 + B2_Mm2 SINE B2 163 186 -9 4 1380 352 235 0 0 chr9 104242990 104243058 -19833114 + B3A SINE B2 2 69 -129 4 1380 22 0 0 0 chr9 104243149 104243171 -19833001 + AT_rich Low_complexity Low_complexity 1 22 0 4 1380 186 118 0 0 chr9 104243240 104243274 -19832898 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1380 1030 284 122 19 chr9 104243352 104243819 -19832353 + RMER5 LTR ERV1 13 527 -7 4 1380 450 344 82 9 chr9 104243997 104244229 -19831943 - LTR16A LTR ERVL -5 446 198 4 1380 549 233 104 8 chr9 104244366 104244500 -19831672 + RSINE1 SINE B4 3 149 -16 4 1380 24 0 0 0 chr9 104244514 104244538 -19831634 + AT_rich Low_complexity Low_complexity 1 24 0 4 1380 713 256 98 49 chr9 104244889 104245217 -19830955 + L1MB8 LINE L1 5833 6176 -2 4 1380 964 114 63 0 chr9 104245324 104245482 -19830690 + L1Md_F2 LINE L1 6409 6576 -6 4 1380 565 293 101 14 chr9 104245578 104245786 -19830386 - MLT1E LTR MaLR -7 646 421 4 1380 212 281 84 12 chr9 104245871 104245954 -19830218 - MER5A DNA MER1_type 0 189 101 4 1380 1437 70 38 0 chr9 104246097 104246283 -19829889 - B2_Mm2 SINE B2 -1 194 2 4 1380 539 226 17 25 chr9 104246295 104246413 -19829759 - RSINE1 SINE B4 -44 121 5 4 1380 285 29 0 0 chr9 104246430 104246464 -19829708 + (TTA)n Simple_repeat Simple_repeat 2 35 0 4 1380 1451 218 155 65 chr9 104247565 104248212 -19827960 + Lx9 LINE L1 6925 7629 -15 4 1380 944 255 9 9 chr9 104248523 104248737 -19827435 - ID_B1 SINE B4 -10 214 1 4 1380 844 246 157 10 chr9 104249008 104249320 -19826852 + ORR1E LTR MaLR 1 358 -1 4 1380 228 295 34 11 chr9 104249334 104249423 -19826749 + G-rich Low_complexity Low_complexity 3 93 0 4 1380 751 249 9 32 chr9 104249496 104249712 -19826460 + B3 SINE B2 3 213 -3 4 1380 254 218 146 22 chr9 104249734 104249823 -19826349 - MER5B DNA MER1_type -78 100 1 4 1380 211 321 78 35 chr9 104250081 104250197 -19825975 - MIRb SINE MIR -106 162 42 4 1380 202 336 37 37 chr9 104250275 104250411 -19825761 - L2 LINE L2 -1030 2389 2254 4 1380 310 298 52 35 chr9 104250411 104250585 -19825587 + L1ME1 LINE L1 5959 6135 -44 4 1380 297 257 14 0 chr9 104251080 104251154 -19825018 - PB1D10 SINE Alu -24 93 19 4 1380 459 0 0 0 chr9 104251251 104251302 -19824870 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1380 21 0 0 0 chr9 104251443 104251464 -19824708 + AT_rich Low_complexity Low_complexity 1 21 0 4 1380 445 180 130 0 chr9 104251546 104251646 -19824526 + B3 SINE B2 104 216 0 4 1380 372 266 35 71 chr9 104251966 104252136 -19824036 + RSINE1 SINE B4 2 165 0 4 1380 204 97 0 0 chr9 104252524 104252555 -19823617 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1380 2031 110 33 35 chr9 104252935 104253302 -19822870 - ORR1B2 LTR MaLR 0 367 2 4 1380 976 233 37 174 chr9 104253452 104253888 -19822284 + MTEa LTR MaLR 4 379 0 4 1380 505 275 8 0 chr9 104254206 104254326 -19821846 + B3A SINE B2 2 122 -76 4 1380 1355 25 2 74 chr9 104254326 104254987 -19821185 + (TCTCCC)n Simple_repeat Simple_repeat 1 613 0 4 1380 1472 47 5 55 chr9 104255100 104255301 -19820871 + B2_Mm1a SINE B2 1 191 -2 4 1380 198 0 0 0 chr9 104255325 104255347 -19820825 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1380 413 342 19 44 chr9 104255455 104255660 -19820512 + MTEa LTR MaLR 20 219 -160 4 1380 183 129 0 0 chr9 104256074 104256105 -19820067 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 4 1380 997 113 6 6 chr9 104256106 104256275 -19819897 + (TTCC)n Simple_repeat Simple_repeat 3 171 0 4 1380 245 253 55 44 chr9 104256308 104256386 -19819786 - MLT1C LTR MaLR 0 467 312 4 1380 664 147 0 0 chr9 104256386 104256488 -19819684 + B3 SINE B2 4 105 -111 4 1380 207 69 0 0 chr9 104256531 104256560 -19819612 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1380 253 284 12 12 chr9 104256674 104256756 -19819416 + ID4_ SINE ID 2 83 0 4 1380 1448 84 16 0 chr9 104256816 104257007 -19819165 + B2_Mm2 SINE B2 2 195 0 4 1380 234 0 0 0 chr9 104257024 104257050 -19819122 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1380 288 0 0 0 chr9 104257104 104257136 -19819036 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1380 219 224 0 65 chr9 104257525 104257587 -19818585 + T-rich Low_complexity Low_complexity 4 61 0 4 1380 226 0 29 29 chr9 104257601 104257636 -19818536 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1380 183 80 0 0 chr9 104258433 104258458 -19817714 + (TCCG)n Simple_repeat Simple_repeat 4 28 0 4 1380 233 351 0 0 chr9 104258954 104259011 -19817161 + (CG)n Simple_repeat Simple_repeat 1 57 0 4 1380 823 79 16 0 chr9 104259439 104259565 -19816607 - Lx LINE L1 -4 6650 6523 4 1380 573 167 24 0 chr9 104259605 104259731 -19816441 + CT-rich Low_complexity Low_complexity 2 130 0 4 1380 418 269 17 92 chr9 104259764 104259883 -19816289 - RSINE1 SINE B4 -25 140 31 4 1380 1183 66 6 6 chr9 104259911 104260078 -19816094 + (TTTC)n Simple_repeat Simple_repeat 4 170 0 4 1380 804 158 14 0 chr9 104260089 104260228 -19815944 - B1_Mus1 SINE Alu 0 148 8 4 1380 259 270 48 29 chr9 104260297 104260400 -19815772 - B1F1 SINE Alu -43 106 2 4 1380 189 0 0 0 chr9 104260551 104260572 -19815600 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1380 200 294 128 0 chr9 104260838 104260947 -19815225 - MIRb SINE MIR -115 153 31 4 1380 541 188 44 59 chr9 104261163 104261299 -19814873 + B1F SINE Alu 3 136 -13 4 1380 462 162 0 0 chr9 104261323 104261397 -19814775 + ID4_ SINE ID 2 75 -8 4 1380 238 200 0 48 chr9 104261733 104261817 -19814355 + CT-rich Low_complexity Low_complexity 2 81 0 4 1380 318 318 150 14 chr9 104262101 104262321 -19813851 - MLT1D LTR MaLR 0 505 256 4 1380 24 32 0 0 chr9 104262749 104262780 -19813392 + AT_rich Low_complexity Low_complexity 1 31 0 4 1380 503 304 7 7 chr9 104262832 104262978 -19813194 - RSINE1 SINE B4 -17 148 3 4 1380 251 284 0 0 chr9 104263051 104263110 -19813062 + MER5A DNA MER1_type 17 75 -114 4 1380 490 332 27 54 chr9 104263110 104263333 -19812839 + B4 SINE B4 1 217 -75 4 1380 332 111 0 0 chr9 104263287 104263341 -19812831 + PB1D9 SINE Alu 66 119 -1 4 1380 351 0 0 0 chr9 104263640 104263679 -19812493 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1380 905 0 69 0 chr9 104264388 104264533 -19811639 + (TTC)n Simple_repeat Simple_repeat 1 155 0 4 1380 597 28 0 0 chr9 104264534 104264605 -19811567 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 4 1380 216 97 0 0 chr9 104264605 104264636 -19811536 + (TCC)n Simple_repeat Simple_repeat 3 33 0 4 1380 779 179 7 7 chr9 104264638 104264773 -19811399 - B1_Mur2 SINE Alu -14 135 1 4 1380 310 176 54 27 chr9 104264791 104264866 -19811306 - PB1D7 SINE Alu -6 114 27 4 1380 189 338 14 14 chr9 104264891 104264963 -19811209 + L2c LINE L2 3097 3168 -219 4 1380 1494 72 0 10 chr9 104265304 104265499 -19810673 + B2_Mm2 SINE B2 2 194 -1 4 1380 908 250 25 21 chr9 104266198 104266439 -19809733 + ORR1D2 LTR MaLR 1 242 -128 4 1380 739 211 0 14 chr9 104266491 104266635 -19809537 + B1_Mur1 SINE Alu 2 143 -6 4 1380 393 263 61 0 chr9 104266668 104266767 -19809405 - MER82 DNA MER2_type -56 597 493 4 1380 1214 68 0 0 chr9 104267019 104267166 -19809006 + B1_Mus2 SINE Alu 1 147 0 4 1380 376 287 9 9 chr9 104267373 104267482 -19808690 + PB1D10 SINE Alu 4 112 -5 4 1380 642 161 53 8 chr9 104267494 104267625 -19808547 + Lx7 LINE L1 7560 7696 0 4 1380 624 253 39 7 chr9 104267649 104267804 -19808368 + ID_B1 SINE B4 2 161 -63 4 1380 603 0 0 0 chr9 104268206 104268273 -19807899 + (GA)n Simple_repeat Simple_repeat 1 67 0 4 1380 903 71 23 23 chr9 104268302 104268475 -19807697 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 4 1380 507 33 0 0 chr9 104269303 104269364 -19806808 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1380 835 184 146 0 chr9 104269427 104269612 -19806560 - B3 SINE B2 0 216 5 4 1380 387 314 21 21 chr9 104269617 104269760 -19806412 - B4 SINE B4 -64 228 86 4 1380 407 241 17 22 chr9 104269777 104269955 -19806217 + CT-rich Low_complexity Low_complexity 2 178 0 5 1380 25 0 0 0 chr9 104269993 104270018 -19806154 + AT_rich Low_complexity Low_complexity 1 25 0 5 1380 235 288 49 81 chr9 104270088 104270273 -19805899 - MER5C DNA MER1_type -122 191 13 5 1380 225 283 38 57 chr9 104270692 104270797 -19805375 - L1M3 LINE L1 -1984 4156 4054 5 1380 450 0 0 0 chr9 104271023 104271073 -19805099 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1380 432 298 96 35 chr9 104271081 104271342 -19804830 - B4A SINE B4 -11 281 5 5 1380 216 0 0 0 chr9 104271351 104271375 -19804797 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 5 1380 989 70 0 27 chr9 104271375 104271521 -19804651 - B1_Mur4 SINE Alu 0 150 9 5 1380 259 244 40 112 chr9 104271424 104271576 -19804596 - MT2B2 LTR ERVL -327 257 117 5 1380 383 332 62 0 chr9 104271607 104271800 -19804372 - L1M5 LINE L1 -2277 3869 3665 5 1380 516 140 29 29 chr9 104271946 104272049 -19804123 - B3 SINE B2 -6 210 108 5 1380 631 260 55 0 chr9 104272078 104272259 -19803913 - B3 SINE B2 0 216 26 5 1380 1238 179 4 13 chr9 104272281 104272508 -19803664 + URR1B DNA MER1_type 1 225 0 5 1380 1102 75 14 0 chr9 104272583 104272729 -19803443 - B1_Mus1 SINE Alu 0 148 1 5 1380 2175 95 6 3 chr9 104273050 104273367 -19802805 + ORR1A2 LTR MaLR 1 318 -9 5 1380 278 282 35 0 chr9 104273376 104273461 -19802711 - LTR33 LTR ERVL 0 515 428 5 1380 274 289 33 8 chr9 104273669 104273791 -19802381 - RSINE1 SINE B4 -38 127 3 5 1380 1168 23 0 0 chr9 104273917 104274050 -19802122 + B1_Mus2 SINE Alu 1 133 -14 5 1380 270 0 0 0 chr9 104274050 104274080 -19802092 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 5 1380 524 195 198 24 chr9 104274273 104274399 -19801773 - B1_Mur4 SINE Alu 0 150 3 5 1380 901 241 15 5 chr9 104274412 104274608 -19801564 - B3A SINE B2 0 198 1 5 1380 207 0 0 0 chr9 104274791 104274814 -19801358 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1380 914 304 89 15 chr9 104275071 104275545 -19800627 - L1MB7 LINE L1 -51 6133 5625 5 1380 737 246 183 8 chr9 104276123 104276385 -19799787 + MTEb LTR MaLR 72 379 0 5 1380 557 319 11 117 chr9 104276412 104276771 -19799401 - MLT1B LTR MaLR -67 323 3 5 1380 347 224 118 74 chr9 104276996 104277131 -19799041 + B1F SINE Alu 9 149 0 5 1380 251 304 65 0 chr9 104277411 104277503 -19798669 - PB1D10 SINE Alu -19 98 1 5 1380 293 155 17 0 chr9 104279789 104279847 -19796325 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1380 716 276 74 16 chr9 104279892 104280150 -19796022 - B4A SINE B4 -17 275 3 5 1380 533 291 21 63 chr9 104280191 104280382 -19795790 + B3A SINE B2 15 197 -1 5 1380 1113 278 34 99 chr9 104280613 104281197 -19794975 + L1M2 LINE L1 4515 5060 -1083 5 1380 201 74 0 0 chr9 104281224 104281251 -19794921 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1380 250 228 0 17 chr9 104281289 104281347 -19794825 + L1_Rod LINE L1 5119 5175 -672 5 1380 349 229 63 42 chr9 104281335 104281483 -19794689 + L1M2 LINE L1 5352 5505 -795 5 1380 429 196 0 11 chr9 104281498 104281591 -19794581 + B1_Mur2 SINE Alu 1 92 -57 5 1380 318 233 112 72 chr9 104281591 104281716 -19794456 + L1M2 LINE L1 5620 5749 -542 5 1380 379 250 116 45 chr9 104282527 104282682 -19793490 + B3A SINE B2 1 166 -32 5 1380 312 70 0 0 chr9 104282876 104282919 -19793253 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1380 194 62 31 0 chr9 104282919 104282950 -19793222 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 1380 455 248 71 18 chr9 104283273 104283441 -19792731 - MLT1B LTR MaLR -3 387 211 5 1380 1996 188 8 19 chr9 104283742 104284116 -19792056 + ORR1D1 LTR MaLR 5 374 0 5 1380 1251 41 0 0 chr9 104284124 104284271 -19791901 - B1_Mm SINE Alu 0 147 1 5 1380 180 301 106 0 chr9 104284972 104285085 -19791087 - MIRb SINE MIR -76 192 68 5 1380 267 281 47 0 chr9 104285461 104285525 -19790647 - ID4 SINE ID -4 79 13 5 1380 21 82 0 0 chr9 104286075 104286124 -19790048 + AT_rich Low_complexity Low_complexity 1 49 0 5 1380 267 31 0 0 chr9 104286235 104286267 -19789905 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1380 262 312 95 41 chr9 104286992 104287139 -19789033 + MER97c DNA MER1_type? 2 156 -934 5 1380 335 261 103 49 chr9 104287283 104287468 -19788704 - MER3 DNA MER1_type -4 205 11 5 1380 210 340 72 48 chr9 104287641 104287808 -19788364 - L2c LINE L2 -4 3383 3213 5 1380 213 64 39 78 chr9 104288205 104288256 -19787916 + T-rich Low_complexity Low_complexity 2 50 0 5 1380 665 245 36 12 chr9 104288564 104288773 -19787399 + B3A SINE B2 1 210 -6 5 1380 523 126 10 10 chr9 104289960 104290056 -19786116 + (CCCCCT)n Simple_repeat Simple_repeat 5 100 0 5 1380 303 239 42 0 chr9 104290457 104290528 -19785644 + MER5A DNA MER1_type 2 75 -114 5 1380 357 177 0 0 chr9 104290582 104290661 -19785511 + (CCA)n Simple_repeat Simple_repeat 3 81 0 5 1380 710 182 43 7 chr9 104290891 104291029 -19785143 - B1_Mur1 SINE Alu -6 143 1 5 1380 277 194 149 11 chr9 104291045 104291139 -19785033 - PB1D10 SINE Alu 0 117 11 5 1380 290 197 45 0 chr9 104291244 104291310 -19784862 + PB1D7 SINE Alu 47 115 -5 5 1380 320 258 0 10 chr9 104291708 104291806 -19784366 + MER53 DNA hAT 1 97 -96 5 1380 601 233 0 8 chr9 104291888 104292005 -19784167 - PB1D10 SINE Alu 0 117 2 5 1380 297 0 0 0 chr9 104292107 104292140 -19784032 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1380 362 345 117 8 chr9 104292182 104292439 -19783733 - B4A SINE B4 -4 288 4 5 1380 478 274 131 27 chr9 104292521 104292780 -19783392 + MER33 DNA MER1_type 25 310 -14 5 1380 304 127 0 98 chr9 104293768 104293829 -19782343 + B1_Mur4 SINE Alu 6 60 -90 5 1380 637 131 10 0 chr9 104293881 104293980 -19782192 + B1_Mus2 SINE Alu 42 141 -6 5 1380 351 0 0 0 chr9 104293981 104294020 -19782152 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 5 1380 526 266 55 61 chr9 104294663 104294827 -19781345 - RSINE1 SINE B4 0 165 3 5 1380 532 290 119 52 chr9 104295095 104295422 -19780750 - MLT1G3 LTR MaLR -110 485 137 5 1380 685 288 57 9 chr9 104295425 104295635 -19780537 + ID_B1 SINE B4 1 220 -4 5 1380 2456 122 65 0 chr9 104295762 104296132 -19780040 - ORR1B1 LTR MaLR 0 394 1 5 1380 381 199 0 0 chr9 104296143 104296274 -19779898 + (TATATG)n Simple_repeat Simple_repeat 2 132 0 5 1380 388 187 0 62 chr9 104296276 104296373 -19779799 - L1MA9 LINE L1 -74 6238 6148 5 1380 502 302 40 17 chr9 104296427 104296602 -19779570 - L1MA9 LINE L1 -153 6159 5981 5 1380 806 102 62 0 chr9 104296733 104296857 -19779315 - B2_Mm2 SINE B2 -55 140 9 5 1380 591 49 0 0 chr9 104296857 104296939 -19779233 + B1_Mus1 SINE Alu 3 84 -64 5 1380 260 140 20 0 chr9 104296895 104296945 -19779227 + RLTR25B LTR ERVK 441 491 -537 5 1380 334 186 75 47 chr9 104296949 104297056 -19779116 - L1M3 LINE L1 -878 5262 5153 5 1380 487 265 18 60 chr9 104297259 104297452 -19778720 - MLT2B4 LTR ERVL -355 199 15 5 1380 351 306 7 29 chr9 104297515 104297653 -19778519 + MIR SINE MIR 81 215 -47 5 1380 372 22 0 0 chr9 104297721 104297766 -19778406 + (TATG)n Simple_repeat Simple_repeat 1 45 0 5 1380 4269 89 7 23 chr9 104297956 104298564 -19777608 + L1_Mus4 LINE L1 6036 6633 -3 5 1380 1236 28 7 0 chr9 104298571 104298715 -19777457 + B1_Mm SINE Alu 2 146 -1 5 1380 231 36 0 0 chr9 104298715 104298743 -19777429 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1380 240 26 0 0 chr9 104298773 104298811 -19777361 + L1_Mus1 LINE L1 6530 6567 0 5 1380 22 0 0 0 chr9 104298851 104298873 -19777299 + AT_rich Low_complexity Low_complexity 1 22 0 5 1380 2811 95 24 10 chr9 104299154 104299568 -19776604 - BGLII LTR ERVK 0 421 2 5 1380 213 302 117 58 chr9 104300251 104300388 -19775784 + MIR3 SINE MIR 42 186 -22 5 1380 21 0 0 0 chr9 104300676 104300697 -19775475 + AT_rich Low_complexity Low_complexity 1 21 0 5 1380 1505 69 0 5 chr9 104301059 104301249 -19774923 + B2_Mm2 SINE B2 2 190 -5 5 1380 225 339 23 69 chr9 104301329 104301459 -19774713 + MTEb LTR MaLR 256 379 0 5 1380 653 14 0 0 chr9 104302449 104302521 -19773651 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 5 1380 225 259 47 12 chr9 104302723 104302809 -19773363 - MIRb SINE MIR -133 135 47 5 1380 407 317 0 40 chr9 104302857 104302982 -19773190 + ID_B1 SINE B4 95 214 -10 5 1380 225 0 0 0 chr9 104302983 104303008 -19773164 + (CAAAC)n Simple_repeat Simple_repeat 3 27 0 5 1380 594 128 0 0 chr9 104303196 104303313 -19772859 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 1380 1059 186 22 48 chr9 104303428 104303578 -19772594 + URR1B DNA MER1_type 1 150 -75 5 1380 1180 57 0 0 chr9 104303578 104303718 -19772454 + B1_Mus1 SINE Alu 2 141 -7 5 1380 315 0 0 0 chr9 104303723 104303758 -19772414 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1380 1059 186 22 48 chr9 104303758 104303832 -19772340 + URR1B DNA MER1_type 151 225 0 5 1380 207 0 0 0 chr9 104304476 104304499 -19771673 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1380 1011 24 0 0 chr9 104304502 104304628 -19771544 - B1_Mus1 SINE Alu 0 148 23 5 1380 184 371 11 11 chr9 104305348 104305438 -19770734 + MIR SINE MIR 46 135 -127 5 1380 207 0 0 0 chr9 104305755 104305778 -19770394 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1380 229 204 0 0 chr9 104305906 104305955 -19770217 + (CTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1380 631 28 0 0 chr9 104306385 104306457 -19769715 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 6 1380 708 173 0 0 chr9 104306691 104306841 -19769331 + (CA)n Simple_repeat Simple_repeat 2 151 0 6 1380 900 94 0 0 chr9 104306894 104307022 -19769150 + (TTCTC)n Simple_repeat Simple_repeat 4 131 0 6 1380 1136 109 0 6 chr9 104307022 104307198 -19768974 + (TCC)n Simple_repeat Simple_repeat 3 177 0 6 1380 1170 75 0 0 chr9 104307210 104307356 -19768816 - B1_Mus2 SINE Alu 0 147 2 6 1380 327 250 0 0 chr9 104307492 104307568 -19768604 - PB1D10 SINE Alu -29 88 13 6 1380 344 259 229 9 chr9 104307578 104307687 -19768485 - B1_Mur1 SINE Alu -11 138 6 6 1380 243 103 0 0 chr9 104307710 104307749 -19768423 + (TTAA)n Simple_repeat Simple_repeat 2 40 0 6 1380 992 144 2 2 chr9 104308057 104308495 -19767677 + (CA)n Simple_repeat Simple_repeat 1 438 0 6 1380 398 318 9 0 chr9 104308503 104308613 -19767559 - RSINE1 SINE B4 -30 135 25 6 1380 216 130 0 0 chr9 104308768 104308814 -19767358 + (TCTCTG)n Simple_repeat Simple_repeat 5 50 0 6 1380 234 91 0 0 chr9 104308827 104308860 -19767312 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1380 887 274 38 8 chr9 104308872 104309133 -19767039 - B4 SINE B4 -14 278 10 6 1380 207 162 0 0 chr9 104309793 104309830 -19766342 + CT-rich Low_complexity Low_complexity 2 38 0 6 1380 338 307 146 15 chr9 104309984 104310189 -19765983 - MLT1D LTR MaLR -73 432 201 6 1380 362 248 16 81 chr9 104310536 104310659 -19765513 + PB1 SINE Alu 11 125 -2 6 1380 321 254 0 0 chr9 104310674 104310745 -19765427 + ID4_ SINE ID 9 79 -4 6 1380 302 206 0 0 chr9 104310995 104311068 -19765104 - tRNA-Glu-GAG_ tRNA tRNA -2 73 1 6 1380 461 285 52 68 chr9 104311106 104311358 -19764814 - LTR31 LTR ERV1 -107 512 265 6 1380 207 307 107 19 chr9 104312212 104312315 -19763857 + MER5A DNA MER1_type 43 154 -35 6 1380 201 139 0 0 chr9 104312611 104312654 -19763518 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1380 247 295 11 11 chr9 104313367 104313456 -19762716 - L2c LINE L2 -216 3171 3083 6 1380 369 0 0 0 chr9 104313479 104313520 -19762652 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1380 342 64 0 0 chr9 104313685 104313732 -19762440 + B2_Mm1t SINE B2 1 47 -146 6 1380 22 0 0 0 chr9 104313732 104313754 -19762418 + AT_rich Low_complexity Low_complexity 1 22 0 6 1380 1082 48 0 20 chr9 104313754 104313903 -19762269 - B2_Mm1t SINE B2 -11 182 37 6 1380 1541 53 21 0 chr9 104313904 104314093 -19762079 + B2_Mm1t SINE B2 1 193 0 6 1380 769 282 70 48 chr9 104314803 104315075 -19761097 - B4 SINE B4 -5 287 10 6 1380 183 156 0 0 chr9 104315144 104315176 -19760996 + CT-rich Low_complexity Low_complexity 1 32 0 6 1380 216 260 61 61 chr9 104316845 104316927 -19759245 + MER5A DNA MER1_type 3 84 -105 6 1380 532 286 40 34 chr9 104317008 104317254 -19758918 - LTR81B LTR ERV1? -1115 278 29 6 1380 2506 121 25 147 chr9 104317418 104317943 -19758229 - RMER6B LTR ERVK 0 461 1 6 1380 2315 100 58 16 chr9 104319245 104319446 -19756726 + RLTR14 LTR ERV1 3 219 -163 6 1380 2814 74 52 3 chr9 104319446 104319827 -19756345 - MTB LTR MaLR 0 400 1 6 1380 2315 100 58 16 chr9 104319827 104319990 -19756182 + RLTR14 LTR ERV1 220 382 0 6 1380 225 264 28 0 chr9 104320102 104320174 -19755998 + MER103 DNA DNA 43 116 -50 6 1380 475 309 148 0 chr9 104320575 104320724 -19755448 + B3A SINE B2 1 171 -27 6 1380 495 0 0 0 chr9 104320743 104320798 -19755374 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1380 358 281 92 29 chr9 104321085 104321352 -19754820 - RLTR12B LTR ERVK -250 278 58 6 1380 314 318 78 33 chr9 104321496 104321649 -19754523 - MER58A DNA MER1_type -64 160 1 6 1380 525 273 13 20 chr9 104321739 104321892 -19754280 - RSINE1 SINE B4 -11 154 3 6 1380 483 281 0 67 chr9 104322274 104322423 -19753749 + B4 SINE B4 2 140 -152 6 1380 731 241 14 0 chr9 104322493 104322638 -19753534 + B4 SINE B4 127 273 -19 6 1380 1221 134 7 0 chr9 104323687 104323954 -19752218 + (TCTA)n Simple_repeat Simple_repeat 1 268 0 6 1380 270 257 13 13 chr9 104324419 104324494 -19751678 + CT-rich Low_complexity Low_complexity 2 76 0 6 1380 383 286 127 8 chr9 104324501 104324635 -19751537 - ID_B1 SINE B4 -5 219 70 6 1380 222 302 0 19 chr9 104325097 104325151 -19751021 - B1F1 SINE Alu -96 53 1 6 1380 1144 265 63 37 chr9 104326223 104326572 -19749600 - MTE2a LTR MaLR -3 376 19 6 1380 219 335 74 115 chr9 104326763 104327006 -19749166 - MIRm SINE MIR -2 274 42 6 1380 1107 62 0 0 chr9 104327022 104327166 -19749006 + (TTTC)n Simple_repeat Simple_repeat 4 147 0 6 1380 2079 237 7 16 chr9 104327166 104327591 -19748581 - Lx6 LINE L1 -34 7426 7006 6 1380 477 0 0 0 chr9 104328543 104328596 -19747576 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1380 626 293 64 41 chr9 104328922 104329189 -19746983 - MLT1H LTR MaLR -273 276 4 6 1380 270 0 0 0 chr9 104329502 104329532 -19746640 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1380 224 30 0 29 chr9 104329992 104330026 -19746146 + (CAA)n Simple_repeat Simple_repeat 2 34 0 6 1380 757 169 35 0 chr9 104331321 104331493 -19744679 + Lx9 LINE L1 7451 7628 -16 6 1380 251 153 82 133 chr9 104331880 104331978 -19744194 + L1MC LINE L1 4595 4687 -1459 6 1380 370 237 52 17 chr9 104331967 104332083 -19744089 + L1M4 LINE L1 5043 5162 -984 6 1380 785 234 132 0 chr9 104332148 104332345 -19743827 + ID_B1 SINE B4 1 223 -1 6 1380 305 243 202 25 chr9 104332467 104332669 -19743503 + L1M4 LINE L1 5417 5660 -519 6 172 844 143 12 0 chr9 104333252 104333420 -19742752 + CT-rich Low_complexity Low_complexity 1 170 0 6 1381 330 26 0 0 chr9 104333422 104333461 -19742711 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1381 197 269 53 11 chr9 104334102 104334196 -19741976 + MIRc SINE MIR 160 257 -11 6 1381 241 260 54 14 chr9 104335335 104335409 -19740763 + MIR SINE MIR 23 99 -163 6 1381 1013 232 80 4 chr9 104335835 104336086 -19740086 + B4A SINE B4 5 274 -18 6 1381 1220 48 0 0 chr9 104336372 104336518 -19739654 + B1_Mm SINE Alu 2 147 0 6 1381 433 0 35 0 chr9 104336521 104336578 -19739594 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1381 204 40 0 0 chr9 104336635 104336660 -19739512 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1381 651 168 0 0 chr9 104336699 104336806 -19739366 + L1Md_F LINE L1 121 227 -6292 6 1381 484 260 104 50 chr9 104337457 104337716 -19738456 + L1MA8 LINE L1 6014 6286 -5 6 1381 24 0 0 0 chr9 104337926 104337950 -19738222 + AT_rich Low_complexity Low_complexity 1 24 0 6 1381 879 336 87 19 chr9 104338151 104338917 -19737255 - Lx8 LINE L1 -1552 5921 5096 6 1381 482 304 75 29 chr9 104339202 104339480 -19736692 + MER33 DNA MER1_type 1 291 -33 6 1381 2517 168 64 16 chr9 104339532 104340035 -19736137 + RLTR11A2 LTR ERVK 1 527 0 6 1381 209 295 16 0 chr9 104340046 104340107 -19736065 + L2b LINE L2 3308 3369 -6 6 1381 858 266 54 40 chr9 104341148 104341446 -19734726 + ORR1E LTR MaLR 56 357 -2 6 1381 1180 211 255 41 chr9 104342004 104342443 -19733729 - MT2A LTR ERVL 0 533 1 6 1381 901 226 55 0 chr9 104343262 104343461 -19732711 - B3 SINE B2 -6 210 1 6 1381 251 253 96 107 chr9 104343651 104343828 -19732344 + MTEa LTR MaLR 205 379 0 6 1381 2339 165 2 19 chr9 104343843 104344257 -19731915 + MTB_Mm LTR MaLR 1 407 0 6 1381 216 0 0 0 chr9 104344798 104344822 -19731350 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1381 301 239 61 9 chr9 104345942 104346056 -19730116 - Charlie5 DNA MER1_type -2418 206 87 6 1381 390 288 25 8 chr9 104346086 104346205 -19729967 + B1F1 SINE Alu 21 141 -8 6 1381 310 267 27 0 chr9 104346220 104346295 -19729877 + ID4_ SINE ID 2 78 -5 6 1381 519 224 39 16 chr9 104346514 104346641 -19729531 + ID_B1 SINE B4 90 219 -5 6 1381 192 308 181 7 chr9 104346666 104346810 -19729362 + L2b LINE L2 3197 3365 -10 6 1381 753 260 9 51 chr9 104347882 104348016 -19728156 - B3 SINE B2 -9 207 76 6 1381 1289 118 108 5 chr9 104348016 104348220 -19727952 - URR1B DNA MER1_type 0 225 1 6 1381 753 260 9 51 chr9 104348220 104348300 -19727872 - B3 SINE B2 -141 75 2 6 1381 211 262 15 15 chr9 104348392 104348458 -19727714 + CT-rich Low_complexity Low_complexity 2 67 0 6 1381 637 246 0 0 chr9 104350014 104350152 -19726020 + B1F SINE Alu 5 142 -7 6 1381 595 241 0 15 chr9 104350364 104350499 -19725673 + B4 SINE B4 42 174 -118 6 1381 691 174 81 38 chr9 104350505 104350690 -19725482 + MTE2a LTR MaLR 184 376 -3 6 1381 206 128 0 25 chr9 104351800 104351840 -19724332 + CT-rich Low_complexity Low_complexity 2 40 0 6 1381 506 261 44 7 chr9 104351841 104351976 -19724196 - ID_B1 SINE B4 0 224 85 6 1381 3702 45 5 0 chr9 104352216 104352660 -19723512 - L1Md_F2 LINE L1 0 6582 6137 6 1381 2919 27 0 0 chr9 104352662 104352996 -19723176 + L1Md_F2 LINE L1 5836 6169 -413 6 1381 317 215 0 0 chr9 104353078 104353143 -19723029 - MT2A LTR ERVL -370 163 99 6 1381 484 204 43 34 chr9 104353157 104353274 -19722898 - MT2A LTR ERVL -415 118 1 6 1381 198 91 0 0 chr9 104353307 104353340 -19722832 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1381 1226 222 45 21 chr9 104353760 104353779 -19722393 - MTEa LTR MaLR -82 297 284 6 1381 1564 202 92 17 chr9 104353779 104353968 -19722204 - ORR1C2 LTR MaLR 0 384 173 6 1381 756 33 0 0 chr9 104353968 104354059 -19722113 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1381 1564 202 92 17 chr9 104354059 104354226 -19721946 - ORR1C2 LTR MaLR -212 172 2 6 1381 1226 222 45 21 chr9 104354226 104354496 -19721676 - MTEa LTR MaLR -96 283 1 6 1381 246 291 56 8 chr9 104355215 104355314 -19720858 - MIR3 SINE MIR -85 183 83 6 1381 432 258 15 8 chr9 104355512 104355645 -19720527 + MTE2b-int LTR MaLR 1297 1430 -150 6 1381 338 308 98 80 chr9 104355719 104355994 -19720178 - B4 SINE B4 -10 282 3 6 1381 514 261 13 13 chr9 104356002 104356161 -19720011 + MTE2b-int LTR MaLR 1420 1578 -2 6 1381 1382 255 29 16 chr9 104356163 104356537 -19719635 + MTE2b LTR MaLR 1 379 0 6 1381 469 198 10 0 chr9 104357202 104357298 -19718874 + MER5A1 DNA MER1_type 1 97 -69 7 1381 360 299 45 21 chr9 104357505 104357652 -19718520 + L2a LINE L2 3218 3411 -15 7 1381 4287 140 6 6 chr9 104358304 104358978 -19717194 - Lx2 LINE L1 -6 6991 6318 7 1381 1196 136 20 0 chr9 104359148 104359346 -19716826 + L1_Mus3 LINE L1 6437 6638 0 7 1381 238 349 0 0 chr9 104359351 104359417 -19716755 + C-rich Low_complexity Low_complexity 2 67 0 7 1381 717 43 0 0 chr9 104360413 104360506 -19715666 + (TC)n Simple_repeat Simple_repeat 2 94 0 7 1381 1974 164 57 11 chr9 104361607 104361958 -19714214 + ORR1B2 LTR MaLR 1 367 0 7 1381 279 0 0 0 chr9 104362559 104362590 -19713582 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1381 310 375 0 0 chr9 104362645 104362741 -19713431 + MER58A DNA MER1_type 5 100 -124 7 1381 281 325 64 34 chr9 104363051 104363287 -19712885 - L2 LINE L2 -774 2645 2403 7 1381 575 221 69 0 chr9 104363291 104363436 -19712736 + B3A SINE B2 3 157 -41 7 1381 630 0 0 0 chr9 104363444 104363514 -19712658 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1381 423 0 0 0 chr9 104363514 104363560 -19712612 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1381 1215 180 49 67 chr9 104364975 104365303 -19710869 - RLTRETN_Mm LTR ERVK 0 322 1 7 1381 25 0 0 0 chr9 104366416 104366441 -19709731 + AT_rich Low_complexity Low_complexity 1 25 0 7 1381 778 273 185 9 chr9 104366587 104366916 -19709256 + MTD LTR MaLR 18 404 -15 7 1381 697 272 112 24 chr9 104369008 104369257 -19706915 + MTE2b LTR MaLR 1 271 -108 7 1381 695 250 6 56 chr9 104369254 104369432 -19706740 + B4A SINE B4 66 234 -58 7 1381 450 0 0 0 chr9 104369441 104369491 -19706681 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1381 216 0 0 0 chr9 104369491 104369514 -19706658 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1381 246 406 7 0 chr9 104370001 104370144 -19706028 - MLT1H LTR MaLR -405 144 1 7 1381 912 218 54 15 chr9 104370169 104370374 -19705798 + B3 SINE B2 4 216 0 7 1381 180 45 69 83 chr9 104370379 104370451 -19705721 + A-rich Low_complexity Low_complexity 2 72 0 7 1381 332 283 50 20 chr9 104370624 104370725 -19705447 + B4 SINE B4 173 276 -16 7 1381 1695 229 133 33 chr9 104370904 104371451 -19704721 - RMER13A LTR ERVK -191 669 68 7 1381 1306 147 0 0 chr9 104371884 104372074 -19704098 - Lx4A LINE L1 -152 6906 6717 7 1381 962 334 97 28 chr9 104372554 104373090 -19703082 - MLT1G3 LTR MaLR -20 575 3 7 1381 4170 130 6 0 chr9 104373415 104374037 -19702135 - Lx2B LINE L1 -10 6990 6365 7 1381 819 83 30 21 chr9 104374057 104374201 -19701971 - MTB LTR MaLR 0 400 235 7 1381 992 272 19 11 chr9 104374228 104374488 -19701684 + ORR1E LTR MaLR 66 327 -32 7 1381 405 0 0 0 chr9 104374727 104374772 -19701400 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1381 284 70 0 23 chr9 104374772 104374816 -19701356 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1381 190 288 87 35 chr9 104375234 104375349 -19700823 - MIR3 SINE MIR -27 181 61 7 1381 234 0 0 0 chr9 104376337 104376363 -19699809 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1381 459 0 0 0 chr9 104376363 104376414 -19699758 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1381 1859 176 45 11 chr9 104376471 104376828 -19699344 + ORR1D1 LTR MaLR 1 369 -5 7 1381 822 300 101 58 chr9 104378071 104378871 -19697301 - L1ME1 LINE L1 -44 6135 5301 7 1381 956 269 27 11 chr9 104379005 104379268 -19696904 + B4A SINE B4 4 270 -22 7 1381 555 92 0 0 chr9 104379268 104379355 -19696817 + (CA)n Simple_repeat Simple_repeat 1 87 0 7 1381 240 338 30 37 chr9 104379540 104379675 -19696497 - B1F1 SINE Alu -3 146 13 7 1381 1088 131 128 25 chr9 104379766 104379969 -19696203 + URR1A DNA MER1_type 3 226 0 7 1381 248 324 8 51 chr9 104380795 104380912 -19695260 - MLT1J2 LTR MaLR -243 205 94 7 1381 239 296 24 12 chr9 104381311 104381393 -19694779 - B4 SINE B4 -37 255 173 7 1381 361 300 18 18 chr9 104381417 104381529 -19694643 - B4 SINE B4 -179 113 2 7 1381 2231 237 73 78 chr9 104381545 104383361 -19692811 - RMER1B Other Other 0 1066 1 7 1381 558 290 35 6 chr9 104383905 104384075 -19692097 + MER20 DNA MER1_type 45 219 0 7 1381 329 181 181 0 chr9 104384270 104384353 -19691819 - B1F1 SINE Alu -51 98 1 7 1381 222 62 0 0 chr9 104384509 104384541 -19691631 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1381 2907 70 0 5 chr9 104386208 104386593 -19689579 - L1_Mur1 LINE L1 -746 5140 4758 7 1381 7653 79 45 16 chr9 104386593 104387688 -19688484 + Lx3_Mus LINE L1 5871 6997 -12 7 1381 33 0 0 0 chr9 104387691 104387724 -19688448 + AT_rich Low_complexity Low_complexity 1 33 0 7 1381 719 250 0 0 chr9 104388248 104388400 -19687772 + B3A SINE B2 1 152 -46 7 1381 468 0 0 0 chr9 104388401 104388453 -19687719 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1381 414 114 0 0 chr9 104388491 104388570 -19687602 + (TC)n Simple_repeat Simple_repeat 2 80 0 7 1381 225 0 0 0 chr9 104388572 104388597 -19687575 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1381 667 304 10 5 chr9 104388677 104388872 -19687300 + MTD LTR MaLR 18 213 -206 7 1381 456 219 238 0 chr9 104389022 104389173 -19686999 + MTD LTR MaLR 225 411 -8 7 1381 814 239 41 28 chr9 104389377 104389672 -19686500 - ORR1E LTR MaLR -13 366 6 7 1381 538 197 21 90 chr9 104390366 104390511 -19685661 + B4A SINE B4 99 233 -59 7 1381 995 71 0 7 chr9 104390525 104390667 -19685505 + (CA)n Simple_repeat Simple_repeat 2 142 0 7 1381 929 122 48 0 chr9 104390710 104390857 -19685315 - URR1A DNA MER1_type -72 154 1 7 1381 260 315 36 36 chr9 104390864 104390976 -19685196 - PB1D7 SINE Alu -8 112 1 7 1381 287 305 10 40 chr9 104390878 104390977 -19685195 - ID_B1 SINE B4 -48 176 81 7 1381 501 58 0 0 chr9 104391335 104391404 -19684768 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1381 228 35 0 0 chr9 104391404 104391432 -19684740 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1381 509 252 0 0 chr9 104391432 104391539 -19684633 - RSINE1 SINE B4 -41 124 18 7 1381 4765 217 52 34 chr9 104393246 104394351 -19681821 - Lx5 LINE L1 -5 7045 5921 7 1381 191 264 11 0 chr9 104394989 104395080 -19681092 + (TG)n Simple_repeat Simple_repeat 1 92 0 7 1381 270 325 58 13 chr9 104395089 104395245 -19680927 - L1ME5 LINE L1 -286 5908 5746 7 1381 578 39 13 0 chr9 104396067 104396144 -19680028 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 7 1381 747 228 75 51 chr9 104396619 104397003 -19679169 + RMER15 LTR ERVL 1 484 -91 7 1381 414 276 153 47 chr9 104397225 104397544 -19678628 + RMER20B LTR ERVK 198 605 -22 7 1381 1529 68 16 0 chr9 104398110 104398301 -19677871 - B2_Mm2 SINE B2 0 195 2 7 1381 207 286 82 41 chr9 104398366 104398439 -19677733 + MIRb SINE MIR 50 125 -143 7 1381 345 299 43 14 chr9 104399228 104399367 -19676805 - MLT2B1 LTR ERVL -162 358 216 7 1381 271 291 99 9 chr9 104399382 104399493 -19676679 - MLT2B1 LTR ERVL -380 135 15 7 1381 795 242 43 14 chr9 104399824 104400034 -19676138 + B3 SINE B2 1 216 0 7 1381 331 295 27 98 chr9 104400108 104400292 -19675880 - MLT1H LTR MaLR -347 202 32 7 1381 373 279 37 55 chr9 104400937 104401100 -19675072 - L1M5 LINE L1 -3584 2562 2403 7 1381 1807 195 85 11 chr9 104401131 104401522 -19674650 - Lx4B LINE L1 0 7058 6643 7 1381 234 0 0 0 chr9 104401529 104401555 -19674617 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1381 710 259 107 62 chr9 104401591 104401863 -19674309 - B4A SINE B4 -8 284 1 7 1381 338 341 92 65 chr9 104402059 104402429 -19673743 - LTR33 LTR ERVL -86 429 50 7 1381 261 57 0 0 chr9 104403239 104403274 -19672898 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1381 4177 91 2 2 chr9 104406613 104407185 -19668987 + L1_Mus4 LINE L1 6065 6636 0 7 1381 1299 74 0 0 chr9 104407386 104407562 -19668610 + (TCTCTG)n Simple_repeat Simple_repeat 2 177 0 7 1381 281 197 14 0 chr9 104407564 104407635 -19668537 + CT-rich Low_complexity Low_complexity 2 73 0 7 1381 413 275 86 12 chr9 104407639 104407801 -19668371 - L1MA9 LINE L1 -1 6311 6138 7 1381 757 195 126 31 chr9 104407815 104408006 -19668166 + B3 SINE B2 3 211 -5 7 1381 191 258 16 16 chr9 104408194 104408257 -19667915 - MER5A DNA MER1_type -2 187 125 7 1381 372 264 179 10 chr9 104409328 104409535 -19666637 - Lx8 LINE L1 -2 7471 7230 7 1381 204 200 0 0 chr9 104409543 104409593 -19666579 + CT-rich Low_complexity Low_complexity 1 50 0 7 1381 2763 270 51 30 chr9 104409602 104410988 -19665184 - L1_Mur3 LINE L1 -3558 2322 900 7 1381 1307 304 42 19 chr9 104412125 104412597 -19663575 - Lx8 LINE L1 -2 7471 6989 7 1381 282 299 0 25 chr9 104412592 104412671 -19663501 - Lx7 LINE L1 -676 7020 6944 7 1381 961 298 62 19 chr9 104412802 104413123 -19663049 - MER2 DNA MER2_type -1 344 10 7 1381 395 283 98 7 chr9 104413186 104413339 -19662833 + B4A SINE B4 15 181 -111 7 1381 261 280 102 66 chr9 104413369 104413790 -19662382 + L1MDa LINE L1 1241 1676 -4957 7 1381 297 267 13 0 chr9 104414207 104414282 -19661890 - ID4_ SINE ID 0 83 8 7 1381 535 299 164 13 chr9 104414552 104414861 -19661311 + Lx9 LINE L1 7120 7475 -169 7 1381 432 0 0 0 chr9 104414864 104414912 -19661260 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1381 1688 182 63 41 chr9 104414937 104415303 -19660869 - Lx3C LINE L1 -98 6878 6505 7 1381 311 276 32 16 chr9 104415456 104415581 -19660591 - L1MD LINE L1 -917 5442 5316 7 1381 372 349 72 31 chr9 104415635 104415756 -19660416 - Lx8 LINE L1 -8 7465 7338 8 1381 320 0 25 0 chr9 104415756 104415796 -19660376 + (TTA)n Simple_repeat Simple_repeat 2 42 0 8 1381 372 349 72 31 chr9 104415796 104415807 -19660365 - Lx8 LINE L1 -136 7337 7328 8 1381 321 26 0 0 chr9 104415807 104415845 -19660327 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1381 468 0 0 0 chr9 104415845 104415896 -19660276 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1381 372 349 72 31 chr9 104415896 104416051 -19660121 - Lx8 LINE L1 -146 7327 7165 8 1381 1507 286 61 14 chr9 104416075 104416518 -19659654 - Lx8 LINE L1 -365 7108 6645 8 1381 276 198 38 94 chr9 104416527 104416633 -19659539 - L1M4 LINE L1 -840 5306 5207 8 1381 1864 135 64 15 chr9 104416770 104417100 -19659072 - ORR1B1 LTR MaLR -8 386 41 8 1381 680 300 118 3 chr9 104417284 104417648 -19658524 - L1ME1 LINE L1 -345 5834 5429 8 1381 285 315 61 78 chr9 104417939 104418235 -19657937 - L1MD LINE L1 -935 5211 4921 7 1381 189 107 0 0 chr9 104418943 104418971 -19657201 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1381 5297 38 6 0 chr9 104419151 104419779 -19656393 + L1Md_F3 LINE L1 5937 6568 -16 8 1381 205 57 27 54 chr9 104420455 104420492 -19655680 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 8 1381 1237 226 84 12 chr9 104420697 104421042 -19655130 + ORR1D2 LTR MaLR 1 370 0 8 1381 690 235 90 48 chr9 104421069 104421257 -19654915 - B3 SINE B2 -1 215 20 8 1381 366 306 30 0 chr9 104422361 104422495 -19653677 + MER58A DNA MER1_type 64 201 -23 8 1381 489 283 48 7 chr9 104422631 104422777 -19653395 - B4A SINE B4 -4 288 137 8 1381 208 209 17 43 chr9 104423306 104423329 -19652843 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 8 1381 3058 212 45 61 chr9 104423329 104424198 -19651974 + RLTR13A LTR ERVK 1 855 0 8 1381 208 209 17 43 chr9 104424198 104424302 -19651870 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 8 1381 1539 0 0 0 chr9 104424302 104424473 -19651699 + (TATATG)n Simple_repeat Simple_repeat 1 171 0 8 1381 207 256 44 0 chr9 104424473 104424496 -19651676 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1381 198 0 0 0 chr9 104425018 104425040 -19651132 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1381 809 272 35 0 chr9 104425042 104425244 -19650928 - ID_B1 SINE B4 -3 221 13 8 1381 216 67 0 0 chr9 104426117 104426147 -19650025 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 8 1381 1228 215 93 77 chr9 104426207 104426560 -19649612 - Lx5 LINE L1 -35 7015 6657 8 1381 8257 48 1 0 chr9 104426796 104427955 -19648217 - L1Md_F2 LINE L1 -12 6570 5411 8 1381 222 37 0 0 chr9 104427970 104427997 -19648175 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1381 590 348 151 41 chr9 104428074 104428904 -19647268 - L2a LINE L2 -233 3193 2252 8 1381 1017 268 53 58 chr9 104428904 104429284 -19646888 + MTEb LTR MaLR 2 379 0 8 1381 590 347 162 45 chr9 104429284 104429477 -19646695 - L2a LINE L2 -1168 2251 2056 8 1381 358 317 148 6 chr9 104430635 104430797 -19645375 + MER20 DNA MER1_type 34 218 -1 8 1381 729 150 0 0 chr9 104431221 104431401 -19644771 + (CAG)n Simple_repeat Simple_repeat 1 180 0 8 1381 607 253 93 6 chr9 104431567 104431750 -19644422 - B3 SINE B2 -17 199 1 8 1381 1892 176 26 37 chr9 104432317 104432695 -19643477 - ORR1D1 LTR MaLR 0 374 1 8 1381 700 264 0 70 chr9 104433755 104433926 -19642246 - RSINE1 SINE B4 -4 161 3 8 1381 351 136 0 0 chr9 104434090 104434149 -19642023 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 1381 293 175 18 0 chr9 104434152 104434209 -19641963 - ID_B1 SINE B4 -10 214 157 8 1381 407 244 0 0 chr9 104434960 104435042 -19641130 - B1F SINE Alu -67 82 1 8 1381 267 31 0 0 chr9 104435632 104435664 -19640508 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 8 1381 486 191 15 7 chr9 104437208 104437345 -19638827 + (CA)n Simple_repeat Simple_repeat 1 138 0 8 1381 603 254 19 14 chr9 104437969 104438122 -19638050 - B3A SINE B2 -22 173 29 8 1381 2199 160 14 63 chr9 104438122 104438549 -19637623 + MTB_Mm LTR MaLR 2 407 0 8 1381 603 253 13 0 chr9 104438549 104438571 -19637601 - B3A SINE B2 -170 28 7 8 1381 216 0 0 0 chr9 104438940 104438964 -19637208 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1381 432 259 70 28 chr9 104441280 104441423 -19634749 + MLT1A0 LTR MaLR 192 340 -25 8 1381 409 288 39 46 chr9 104441577 104441730 -19634442 - MTEa LTR MaLR -225 154 3 8 1381 352 235 25 0 chr9 104442380 104442461 -19633711 + ID_B1 SINE B4 136 218 -6 8 1381 186 43 0 0 chr9 104442981 104443004 -19633168 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1381 1722 209 53 33 chr9 104443156 104443551 -19632621 + MTD LTR MaLR 3 405 -14 8 1381 529 333 129 59 chr9 104443611 104444412 -19631760 - HAL1b LINE L1 -965 1044 188 8 1381 720 294 59 39 chr9 104444490 104444776 -19631396 - B4A SINE B4 0 292 1 8 1381 23 0 0 0 chr9 104444795 104444818 -19631354 + AT_rich Low_complexity Low_complexity 1 23 0 8 1381 1427 207 154 69 chr9 104444923 104445389 -19630783 - RMER20A LTR ERVK 0 516 11 8 1381 976 302 45 33 chr9 104446067 104446492 -19629680 - Lx8 LINE L1 -6 7467 7038 8 1381 881 230 37 28 chr9 104447944 104448159 -19628013 - ID_B1 SINE B4 0 224 8 8 1381 420 284 21 7 chr9 104448283 104448425 -19627747 + MLT1B LTR MaLR 4 147 -243 8 1381 2636 142 97 12 chr9 104448690 104449176 -19626996 + RLTR11A2 LTR ERVK 1 527 0 8 1381 321 283 71 14 chr9 104450279 104450419 -19625753 + L1_Rod LINE L1 464 611 -6561 8 1381 919 196 59 78 chr9 104450439 104450710 -19625462 + RLTR14 LTR ERV1 13 278 -104 8 1381 354 197 0 0 chr9 104450787 104450853 -19625319 + L1_Rod LINE L1 601 666 -6506 8 1381 285 253 48 0 chr9 104450852 104450935 -19625237 + Lx9 LINE L1 5101 5187 -660 8 1381 2132 242 100 37 chr9 104450997 104451716 -19624456 + Lx9 LINE L1 5178 5976 -1497 8 1381 234 0 0 0 chr9 104451716 104451742 -19624430 + (TGG)n Simple_repeat Simple_repeat 2 27 0 8 1381 1845 347 80 32 chr9 104451742 104451882 -19624290 + Lx9 LINE L1 5977 6109 -1364 8 1381 599 58 23 0 chr9 104451882 104451969 -19624203 + (CATA)n Simple_repeat Simple_repeat 4 92 0 8 1381 2803 281 43 22 chr9 104451969 104452849 -19623323 + Lx9 LINE L1 6110 7176 -468 8 1381 2081 162 60 15 chr9 104453031 104453433 -19622739 + MTC LTR MaLR 2 421 0 8 1381 1391 143 4 4 chr9 104453537 104453782 -19622390 + Lx LINE L1 6405 6649 -5 8 1381 334 316 6 57 chr9 104454056 104454214 -19621958 + MIRb SINE MIR 8 157 -111 8 1381 398 271 136 0 chr9 104454269 104454387 -19621785 + RSINE1 SINE B4 3 136 -29 8 1381 504 0 0 0 chr9 104454388 104454444 -19621728 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1381 917 309 57 39 chr9 104454617 104455125 -19621047 - MT2A LTR ERVL -14 519 3 8 1381 260 341 100 22 chr9 104455141 104455321 -19620851 - ORR1E LTR MaLR -106 253 60 8 1381 231 289 38 38 chr9 104455363 104455442 -19620730 - ORR1E LTR MaLR -282 97 19 8 1381 5632 136 6 9 chr9 104455553 104456470 -19619702 + L1_Mur2 LINE L1 3362 4275 -1602 8 1381 347 333 80 40 chr9 104456470 104456695 -19619477 - MLT1H LTR MaLR -262 287 54 8 1381 180 0 0 0 chr9 104457484 104457504 -19618668 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 8 1381 389 255 188 7 chr9 104457679 104457817 -19618355 + RSINE1 SINE B4 3 165 0 8 1381 519 299 101 25 chr9 104458006 104458284 -19617888 - L1MD3 LINE L1 -168 7827 7529 8 1381 1045 326 105 17 chr9 104458716 104459250 -19616922 - Lx8 LINE L1 -129 7344 6764 8 1381 977 227 144 27 chr9 104459261 104459560 -19616612 - ORR1D1 LTR MaLR 0 374 41 8 1381 1274 293 117 41 chr9 104459565 104460789 -19615383 - Lx8 LINE L1 -711 6762 5442 8 1381 240 393 52 0 chr9 104460791 104460926 -19615246 - B4 SINE B4 -146 146 5 8 1381 8371 43 1 2 chr9 104462072 104463255 -19612917 - L1Md_F2 LINE L1 -1 6581 5400 8 1381 4867 59 0 0 chr9 104463255 104463852 -19612320 + L1Md_F2 LINE L1 4805 5401 -482 8 1381 488 65 13 0 chr9 104463864 104463941 -19612231 - L1Md_F2 LINE L1 0 6582 6505 8 172 957 293 32 38 chr9 104464113 104464457 -19611715 + MLT1A1 LTR MaLR 60 401 -7 8 1382 533 287 7 0 chr9 104464461 104464604 -19611568 + B1F SINE Alu 1 144 -5 8 1382 1161 69 0 0 chr9 104464971 104465115 -19611057 - B1_Mus2 SINE Alu -3 144 1 8 1382 360 315 82 47 chr9 104465519 104465862 -19610310 + ORR1E LTR MaLR 3 357 -2 8 1382 279 203 0 0 chr9 104465915 104465974 -19610198 + (CCA)n Simple_repeat Simple_repeat 1 59 0 8 1382 778 148 0 11 chr9 104466368 104466737 -19609435 + (TG)n Simple_repeat Simple_repeat 1 364 0 8 1382 300 361 23 0 chr9 104467707 104467840 -19608332 + MER3 DNA MER1_type 11 146 -63 8 1382 180 0 0 0 chr9 104468062 104468082 -19608090 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1382 182 65 65 0 chr9 104468775 104468806 -19607366 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 8 1382 735 12 0 0 chr9 104469452 104469536 -19606636 + (GA)n Simple_repeat Simple_repeat 1 84 0 8 1382 223 324 14 0 chr9 104470019 104470093 -19606079 - L2a LINE L2 -8 3418 3344 8 1382 198 0 0 0 chr9 104470096 104470118 -19606054 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1382 690 274 13 70 chr9 104471281 104471509 -19604663 - ID_B1 SINE B4 -7 217 3 8 1382 333 159 0 0 chr9 104472033 104472096 -19604076 + CT-rich Low_complexity Low_complexity 1 63 0 8 1382 242 159 0 22 chr9 104473593 104473638 -19602534 - B3A SINE B2 -154 44 1 8 1382 333 0 0 0 chr9 104474831 104474868 -19601304 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1382 216 0 0 0 chr9 104474868 104474891 -19601281 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 1382 1143 65 18 0 chr9 104477441 104477611 -19598561 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 8 1382 192 97 0 0 chr9 104477659 104477690 -19598482 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1382 381 310 0 8 chr9 104477701 104477818 -19598354 - PB1D10 SINE Alu -1 116 1 8 1382 746 269 39 15 chr9 104478108 104478312 -19597860 + B3 SINE B2 2 210 -6 8 1382 401 208 26 0 chr9 104478934 104479011 -19597161 - ID4_ SINE ID 0 83 5 8 1382 272 297 95 2 chr9 104479027 104479140 -19597032 - PB1 SINE Alu -2 125 3 8 1382 1733 167 44 62 chr9 104479253 104479637 -19596535 - ORR1C2 LTR MaLR -7 377 1 8 1382 335 218 7 0 chr9 104480302 104480449 -19595723 + CT-rich Low_complexity Low_complexity 1 148 0 8 1382 268 105 53 0 chr9 104480479 104480536 -19595636 + (TCTG)n Simple_repeat Simple_repeat 1 60 0 9 1382 242 51 51 0 chr9 104480593 104480632 -19595540 + (TCTCTG)n Simple_repeat Simple_repeat 6 46 0 9 1382 603 342 13 86 chr9 104480632 104480933 -19595239 - B4A SINE B4 -13 279 1 9 1382 21 71 0 0 chr9 104480983 104481025 -19595147 + AT_rich Low_complexity Low_complexity 1 42 0 9 1382 291 225 37 12 chr9 104481135 104481216 -19594956 + B3A SINE B2 1 83 -115 9 1382 496 227 2 3 chr9 104482002 104482105 -19594067 + B1_Mus1 SINE Alu 1 102 -47 9 1382 834 123 0 0 chr9 104482105 104482235 -19593937 + (ATAAG)n Simple_repeat Simple_repeat 4 133 0 9 1382 621 201 83 13 chr9 104482450 104482606 -19593566 + MTD LTR MaLR 239 405 -14 9 1382 368 230 8 0 chr9 104483294 104483381 -19592791 + B2_Mm2 SINE B2 1 90 -108 9 1382 348 24 0 0 chr9 104483421 104483462 -19592710 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1382 277 308 162 25 chr9 104483537 104483697 -19592475 - MER5A DNA MER1_type -2 187 6 9 1382 362 270 27 0 chr9 104484226 104484337 -19591835 - Charlie1b DNA MER1_type -8 515 402 9 1382 217 0 61 0 chr9 104484829 104484862 -19591310 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1382 186 306 0 0 chr9 104486253 104486325 -19589847 + CT-rich Low_complexity Low_complexity 1 72 0 9 1382 1246 17 0 54 chr9 104486334 104486520 -19589652 + (TTTCC)n Simple_repeat Simple_repeat 5 180 0 9 1382 700 97 26 0 chr9 104486521 104486635 -19589537 + (TTCC)n Simple_repeat Simple_repeat 2 118 0 9 1382 303 325 136 7 chr9 104486635 104486790 -19589382 + MER58A DNA MER1_type 50 224 0 9 1382 450 53 0 0 chr9 104488561 104488618 -19587554 + (TA)n Simple_repeat Simple_repeat 1 57 0 9 1382 414 134 0 0 chr9 104489488 104489555 -19586617 + (CAGA)n Simple_repeat Simple_repeat 4 70 0 9 1382 295 301 11 0 chr9 104490689 104490782 -19585390 + CT-rich Low_complexity Low_complexity 1 94 0 9 1382 242 325 13 13 chr9 104491694 104491772 -19584400 - ID4 SINE ID 0 83 6 9 1382 208 219 0 24 chr9 104494005 104494047 -19582125 + C-rich Low_complexity Low_complexity 3 43 0 9 1382 561 272 202 42 chr9 104495191 104495498 -19580674 + ORR1E LTR MaLR 4 359 0 9 1382 252 321 22 37 chr9 104496630 104496766 -19579406 - MER20 DNA MER1_type -6 213 80 9 1382 432 0 0 0 chr9 104497822 104497870 -19578302 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1382 247 265 29 14 chr9 104497919 104497988 -19578184 - B4 SINE B4 -210 82 13 9 1382 617 261 57 0 chr9 104498082 104498239 -19577933 - ID_B1 SINE B4 -10 214 49 9 1382 398 226 32 0 chr9 104498626 104498719 -19577453 - L2a LINE L2 -1 3425 3330 9 1382 1433 0 0 18 chr9 104498734 104498963 -19577209 + (TTC)n Simple_repeat Simple_repeat 1 224 0 9 1382 1473 39 0 0 chr9 104498963 104499143 -19577029 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 9 1382 243 218 0 0 chr9 104499143 104499198 -19576974 + CT-rich Low_complexity Low_complexity 3 57 0 9 1382 629 282 112 45 chr9 104499283 104499550 -19576622 - B4A SINE B4 -6 286 2 9 1382 205 329 0 26 chr9 104499902 104499980 -19576192 + MER91B DNA Tip100 2 77 -113 9 1382 193 309 49 24 chr9 104501457 104501542 -19574630 - MIR SINE MIR -102 160 74 1 1382 363 265 129 57 chr9 104501574 104501714 -19574458 - B4A SINE B4 -1 291 142 2 1382 343 221 78 0 chr9 104501758 104501835 -19574337 - B4A SINE B4 -208 84 2 2 1382 216 0 0 0 chr9 104502569 104502593 -19573579 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1382 25 0 0 0 chr9 104502661 104502686 -19573486 + AT_rich Low_complexity Low_complexity 1 25 0 4 1382 322 282 43 80 chr9 104503717 104503879 -19572293 - MER5A1 DNA MER1_type 0 166 11 5 1382 281 238 82 45 chr9 104504081 104504191 -19571981 - RSINE1 SINE B4 -37 128 15 6 1382 465 19 0 0 chr9 104505168 104505222 -19570950 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1382 372 319 17 91 chr9 104505257 104505433 -19570739 - RSINE1 SINE B4 0 165 3 8 1382 251 0 59 0 chr9 104505532 104505566 -19570606 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 9 1382 386 281 32 32 chr9 104505573 104505698 -19570474 - B1F SINE Alu -2 147 23 1 1382 589 236 6 11 chr9 104505732 104505912 -19570260 + CT-rich Low_complexity Low_complexity 2 180 0 1 1382 1089 123 0 0 chr9 104505912 104506082 -19570090 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 1 1382 225 65 0 0 chr9 104506152 104506183 -19569989 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1382 369 93 0 0 chr9 104506367 104506421 -19569751 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1382 426 39 0 0 chr9 104506425 104506477 -19569695 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1382 497 279 148 16 chr9 104506518 104506681 -19569491 - B4A SINE B4 -16 276 83 1 1382 327 49 0 0 chr9 104506681 104506722 -19569450 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 1 1382 497 279 148 16 chr9 104506722 104506802 -19569370 - B4A SINE B4 -210 82 2 1 1382 454 250 68 23 chr9 104508366 104508542 -19567630 - L1ME2z LINE L1 -24 6420 6237 1 1382 626 95 15 48 chr9 104508556 104508689 -19567483 + ORR1B1 LTR MaLR 6 148 -246 1 1382 946 300 30 7 chr9 104509279 104509578 -19566594 + Lx8 LINE L1 6967 7272 -201 2 1382 747 0 0 0 chr9 104509980 104510063 -19566109 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 1382 507 260 23 8 chr9 104510497 104510551 -19565621 + ID SINE ID 27 82 -142 2 1382 299 257 144 29 chr9 104510551 104510655 -19565517 + PB1D10 SINE Alu 1 116 -1 2 1382 438 261 61 0 chr9 104510741 104510856 -19565316 + ID_B1 SINE B4 93 214 -10 2 1382 268 213 32 11 chr9 104510877 104510945 -19565227 + (CAAA)n Simple_repeat Simple_repeat 3 72 0 2 1382 662 290 31 40 chr9 104510945 104511171 -19565001 + ID_B1 SINE B4 1 224 0 2 1382 268 213 32 11 chr9 104511171 104511197 -19564975 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 1382 351 0 0 0 chr9 104511211 104511250 -19564922 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1382 302 335 93 19 chr9 104511649 104511917 -19564255 + B4A SINE B4 5 292 0 2 1382 674 185 0 16 chr9 104511962 104512277 -19563895 + (CA)n Simple_repeat Simple_repeat 1 309 0 3 1382 405 0 0 0 chr9 104512284 104512329 -19563843 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1382 22 0 0 0 chr9 104512578 104512600 -19563572 + AT_rich Low_complexity Low_complexity 1 22 0 3 1382 187 54 54 0 chr9 104512660 104512697 -19563475 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 3 1382 189 121 0 0 chr9 104512873 104512906 -19563266 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1382 198 0 0 0 chr9 104513268 104513290 -19562882 + (TCTCTG)n Simple_repeat Simple_repeat 2 23 0 3 1382 1196 227 44 60 chr9 104513657 104514022 -19562150 - ORR1E LTR MaLR 0 359 1 3 1382 597 61 0 0 chr9 104514068 104514150 -19562022 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1382 793 163 0 58 chr9 104514264 104514420 -19561752 - B1_Mus1 SINE Alu 0 148 2 3 1382 745 261 50 5 chr9 104515494 104515693 -19560479 + B4A SINE B4 1 208 -84 3 1382 494 184 78 60 chr9 104515693 104515809 -19560363 + RSINE1 SINE B4 1 118 -47 4 1382 183 42 0 0 chr9 104515809 104515833 -19560339 + (CATG)n Simple_repeat Simple_repeat 3 26 0 4 1382 363 78 0 0 chr9 104516457 104516508 -19559664 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1382 1116 225 9 156 chr9 104517126 104517473 -19558699 + Lx6 LINE L1 7161 7456 -4 4 1382 227 247 14 0 chr9 104517972 104518045 -19558127 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1382 589 325 57 39 chr9 104518045 104518327 -19557845 - B4A SINE B4 0 292 6 4 1382 611 275 0 27 chr9 104520030 104520176 -19555996 - B1_Mur1 SINE Alu -6 143 2 4 1382 432 0 0 0 chr9 104520708 104520756 -19555416 + (CAA)n Simple_repeat Simple_repeat 2 49 0 4 1382 481 279 145 24 chr9 104521679 104521976 -19554196 + L2 LINE L2 2665 2997 -422 4 1382 675 37 0 0 chr9 104522561 104522643 -19553529 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 4 1382 243 296 36 36 chr9 104523160 104523244 -19552928 + MER5A1 DNA MER1_type 8 91 -75 5 1382 553 78 22 22 chr9 104523328 104523420 -19552752 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 5 1382 619 275 0 0 chr9 104523428 104523566 -19552606 - ID_B1 SINE B4 0 224 87 5 1382 425 283 17 0 chr9 104523832 104523952 -19552220 - MER5B DNA MER1_type -56 122 1 5 1382 2225 117 9 50 chr9 104524692 104525033 -19551139 - ORR1A2 LTR MaLR 0 327 1 5 1382 188 283 248 0 chr9 104525200 104525313 -19550859 + MIR SINE MIR 14 154 -108 5 1382 420 257 109 32 chr9 104525438 104525657 -19550515 + MLT1A0 LTR MaLR 1 250 -124 5 1382 704 204 139 6 chr9 104525692 104525865 -19550307 + MTD LTR MaLR 224 419 0 5 1382 542 339 64 32 chr9 104527020 104527342 -19548830 + MTEb LTR MaLR 28 361 -18 5 1382 2159 47 18 14 chr9 104527590 104527873 -19548299 - L1Md_F3 LINE L1 0 6584 6301 5 1382 819 259 11 0 chr9 104527889 104528078 -19548094 + B3 SINE B2 2 192 -24 6 1382 31 0 0 0 chr9 104528084 104528115 -19548057 + AT_rich Low_complexity Low_complexity 1 31 0 6 1382 672 56 0 0 chr9 104528724 104528813 -19547359 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 6 1382 740 264 77 87 chr9 104529779 104530102 -19546070 - Lx8 LINE L1 -55 7418 7099 6 1382 838 258 88 22 chr9 104530756 104531029 -19545143 - B4A SINE B4 0 292 2 6 1382 21 0 0 0 chr9 104531462 104531483 -19544689 + AT_rich Low_complexity Low_complexity 1 21 0 6 1382 181 261 0 21 chr9 104532804 104532851 -19543321 - L3 LINE CR1 -13 4476 4431 6 1382 233 261 21 52 chr9 104533340 104533437 -19542735 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 6 1382 609 309 68 21 chr9 104533798 104534033 -19542139 - B4A SINE B4 -46 246 1 6 1382 1884 34 8 4 chr9 104534137 104534371 -19541801 - L1Md_F3 LINE L1 -1 6583 6349 6 1382 299 301 25 56 chr9 104534457 104534611 -19541561 + MIR SINE MIR 2 157 -51 7 1382 387 0 0 0 chr9 104534645 104534688 -19541484 + (CCTA)n Simple_repeat Simple_repeat 1 43 0 7 1382 654 167 0 0 chr9 104534689 104534845 -19541327 + CT-rich Low_complexity Low_complexity 2 157 0 7 1382 310 143 0 0 chr9 104535206 104535255 -19540917 + B2_Mm2 SINE B2 2 50 -145 7 1382 910 141 0 0 chr9 104535588 104535730 -19540442 + B2_Mm2 SINE B2 2 143 -52 7 1382 215 114 0 22 chr9 104536133 104536178 -19539994 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 7 1382 363 331 237 15 chr9 104536238 104536560 -19539612 + MLT1H1 LTR MaLR 145 539 -16 7 1382 654 49 0 0 chr9 104536663 104536745 -19539427 + (TA)n Simple_repeat Simple_repeat 2 83 0 7 1382 29 0 0 0 chr9 104536778 104536807 -19539365 + AT_rich Low_complexity Low_complexity 1 29 0 7 1382 657 297 5 39 chr9 104537050 104537253 -19538919 + B3A SINE B2 6 201 -15 7 1382 606 288 97 67 chr9 104539086 104539384 -19536788 - Lx8 LINE L1 -403 7070 6764 8 1382 719 271 48 74 chr9 104540708 104541019 -19535153 + MTE2a LTR MaLR 52 354 -25 8 1382 583 211 0 59 chr9 104541045 104541181 -19534991 - B1_Mur2 SINE Alu -10 139 12 8 1382 182 319 27 27 chr9 104541289 104541363 -19534809 - MIR SINE MIR -106 102 29 8 1382 322 226 40 61 chr9 104541399 104541498 -19534674 - MER5A DNA MER1_type -29 160 64 8 1382 5172 169 54 11 chr9 104541501 104542641 -19533531 - Lx2B LINE L1 -396 6604 5419 8 1382 5065 116 14 1 chr9 104542640 104543415 -19532757 - Lx2B LINE L1 -1146 4731 3947 8 1382 183 212 0 0 chr9 104543432 104543465 -19532707 - MER5A DNA MER1_type -142 47 15 8 1382 199 360 20 20 chr9 104543477 104543579 -19532593 + MIR SINE MIR 14 115 -147 8 1382 752 241 50 5 chr9 104545104 104545304 -19530868 - MTD LTR MaLR -208 211 3 8 1382 848 244 74 5 chr9 104545794 104545996 -19530176 + B3 SINE B2 1 216 0 8 1382 338 364 83 18 chr9 104546179 104546402 -19529770 - LTR16D1 LTR ERVL -9 666 409 8 1382 239 255 21 0 chr9 104546643 104546690 -19529482 + tRNA-Ala-GCA tRNA tRNA 22 69 -6 9 1382 297 264 0 14 chr9 104547237 104547310 -19528862 + L1M5 LINE L1 4547 4618 -1528 9 1382 515 273 39 0 chr9 104547641 104547769 -19528403 + B1F2 SINE Alu 4 136 -13 9 1382 180 0 0 0 chr9 104547771 104547791 -19528381 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1382 851 166 14 0 chr9 104547878 104548023 -19528149 - B1_Mur4 SINE Alu -3 147 1 9 1382 1191 283 126 54 chr9 104549384 104550176 -19525996 + RCHARR1 DNA MER1_type 83 931 -43 9 1382 285 213 70 0 chr9 104550420 104550499 -19525673 + B1F SINE Alu 14 102 -18 9 1382 315 308 65 37 chr9 104550507 104550615 -19525557 + B1_Mur1 SINE Alu 26 136 -13 9 1382 775 240 123 20 chr9 104552136 104552387 -19523785 - B4A SINE B4 -14 278 2 9 1382 677 139 0 8 chr9 104552467 104552590 -19523582 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 9 1382 335 308 0 21 chr9 104552592 104552685 -19523487 - PB1D10 SINE Alu -15 102 12 1 1382 870 248 64 10 chr9 104552771 104552975 -19523197 - B3 SINE B2 0 216 2 1 1382 743 262 121 60 chr9 104553225 104553590 -19522582 - MER63B DNA AcHobo -1 435 49 1 1382 530 287 108 31 chr9 104555328 104555551 -19520621 - L1M7 LINE L1 -5937 281 42 1 1382 221 180 20 0 chr9 104555608 104555658 -19520514 + A-rich Low_complexity Low_complexity 1 51 0 1 1382 24 0 0 0 chr9 104556061 104556085 -19520087 + AT_rich Low_complexity Low_complexity 1 24 0 1 1382 204 304 140 11 chr9 104556480 104556573 -19519599 + L2 LINE L2 1983 2087 -1332 1 1382 214 367 33 8 chr9 104556723 104556844 -19519328 - B1_Mm SINE Alu -5 142 19 1 1382 229 321 61 26 chr9 104557243 104557358 -19518814 - MIR3 SINE MIR -7 201 83 1 1382 384 214 26 0 chr9 104558939 104559056 -19517116 + (TA)n Simple_repeat Simple_repeat 2 121 0 1 1382 1663 253 66 14 chr9 104559972 104560413 -19515759 + RCHARR1 DNA MER1_type 5 468 -506 1 1382 497 191 23 0 chr9 104560416 104560547 -19515625 + RCHARR1 DNA MER1_type 753 886 -88 1 1382 1141 76 0 0 chr9 104560599 104560744 -19515428 - B1_Mm SINE Alu -2 145 1 1 1382 185 289 0 0 chr9 104561283 104561328 -19514844 - L2a LINE L2 0 3426 3382 1 1382 531 138 0 0 chr9 104562967 104563054 -19513118 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 1382 589 342 56 52 chr9 104563427 104563751 -19512421 + MLT2B2 LTR ERVL 191 515 0 1 1382 277 363 35 62 chr9 104564222 104564366 -19511806 + MER5B DNA MER1_type 37 176 -2 1 1382 30 59 0 0 chr9 104564735 104564786 -19511386 + AT_rich Low_complexity Low_complexity 1 51 0 1 1382 2319 72 0 50 chr9 104564805 104565143 -19511029 - L1Md_F2 LINE L1 -12 6570 6250 1 1382 22 35 0 0 chr9 104565195 104565224 -19510948 + AT_rich Low_complexity Low_complexity 1 29 0 1 1382 433 275 28 0 chr9 104565694 104565803 -19510369 - RSINE1 SINE B4 -51 114 3 1 1382 423 0 0 0 chr9 104566228 104566275 -19509897 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1382 208 322 22 22 chr9 104566676 104566765 -19509407 - MIRb SINE MIR -67 201 113 1 1382 539 288 166 10 chr9 104567495 104567688 -19508484 + ID_B1 SINE B4 1 223 -1 1 1382 416 313 0 51 chr9 104568641 104568672 -19507500 + Lx8 LINE L1 6850 6880 -593 1 1382 1550 161 92 0 chr9 104568672 104568976 -19507196 - IAPEY3_LTR LTR ERVK 0 332 1 1 1382 416 313 0 51 chr9 104568976 104569082 -19507090 + Lx8 LINE L1 6881 6980 -493 1 1382 603 234 14 35 chr9 104569136 104569278 -19506894 + B1_Mur2 SINE Alu 11 149 0 1 1382 1114 291 6 29 chr9 104569287 104569634 -19506538 + Lx8 LINE L1 7014 7352 -121 1 1382 1861 202 22 27 chr9 104569646 104570017 -19506155 - ORR1D1 LTR MaLR -5 369 1 1 1382 381 327 46 20 chr9 104570581 104570734 -19505438 + L2b LINE L2 3219 3375 0 1 1382 339 89 0 0 chr9 104571737 104571793 -19504379 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1382 195 42 0 0 chr9 104571805 104571829 -19504343 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1382 383 292 47 9 chr9 104571854 104571961 -19504211 - B4A SINE B4 -14 278 168 1 1382 738 34 0 0 chr9 104572397 104572486 -19503686 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 1 1382 841 245 29 34 chr9 104574015 104574222 -19501950 - B3 SINE B2 -10 206 1 1 1382 22 56 0 0 chr9 104574336 104574372 -19501800 + AT_rich Low_complexity Low_complexity 1 36 0 1 1382 23 0 0 0 chr9 104574560 104574583 -19501589 + AT_rich Low_complexity Low_complexity 1 23 0 1 1382 400 291 71 24 chr9 104574877 104575088 -19501084 - L1M2 LINE L1 -481 5819 5599 1 1382 343 305 124 28 chr9 104575155 104575583 -19500589 - L1M2 LINE L1 -860 5283 4815 1 1382 1349 326 43 7 chr9 104575633 104576492 -19499680 - L1M2 LINE L1 -1463 4680 3791 1 1382 299 341 35 17 chr9 104576504 104576677 -19499495 - L1M2 LINE L1 -2456 3687 3512 1 1382 423 0 0 0 chr9 104576796 104576843 -19499329 + (TTA)n Simple_repeat Simple_repeat 1 47 0 1 1382 235 269 121 42 chr9 104576987 104577251 -19498921 - L1_Rod LINE L1 -2456 3391 3107 1 1382 23 54 0 0 chr9 104577251 104577288 -19498884 + AT_rich Low_complexity Low_complexity 1 37 0 1 1382 1082 190 23 45 chr9 104577346 104577567 -19498605 - B3 SINE B2 0 216 1 1 1382 228 309 91 50 chr9 104577601 104578064 -19498108 - L1M2 LINE L1 -3132 3011 2530 1 1382 248 202 0 12 chr9 104578064 104578144 -19498028 + Lx4B LINE L1 6978 7056 -2 1 1382 455 282 168 53 chr9 104578217 104578479 -19497693 + B4A SINE B4 1 292 0 1 1382 568 182 8 8 chr9 104578630 104578763 -19497409 + (TA)n Simple_repeat Simple_repeat 1 133 0 1 1382 401 353 52 0 chr9 104579504 104579677 -19496495 - MIR SINE MIR -29 233 52 1 1382 778 272 43 32 chr9 104579923 104580109 -19496063 - B4A SINE B4 -1 291 104 1 1382 361 240 122 46 chr9 104580114 104580245 -19495927 - RSINE1 SINE B4 0 165 25 1 1382 439 369 51 48 chr9 104581976 104582286 -19493886 - MLT1E1A LTR MaLR -81 599 234 1 1382 386 296 45 18 chr9 104582528 104582638 -19493534 + LTR16A1 LTR ERVL 7 119 -337 1 1382 932 56 136 0 chr9 104583221 104583346 -19492826 + B1_Mus1 SINE Alu 2 143 -5 1 1382 766 288 19 0 chr9 104583425 104583640 -19492532 + ID_B1 SINE B4 1 219 -5 1 1382 22 70 0 0 chr9 104583646 104583689 -19492483 + AT_rich Low_complexity Low_complexity 1 43 0 1 1382 2013 214 97 91 chr9 104583730 104584300 -19491872 - RMER15 LTR ERVL 0 575 3 1 1382 225 387 8 53 chr9 104584626 104584757 -19491415 - Charlie7 DNA MER1_type -2325 287 163 1 1382 1170 130 145 64 chr9 104584983 104585251 -19490921 + ORR1A4 LTR MaLR 5 326 -68 1 1382 258 160 0 0 chr9 104585580 104585630 -19490542 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1382 693 242 160 5 chr9 104585651 104585838 -19490334 + B3 SINE B2 1 216 0 1 1382 230 349 26 35 chr9 104586389 104586502 -19489670 + MIR SINE MIR 30 141 -67 1 1382 461 331 50 13 chr9 104586651 104586810 -19489362 - MER58A DNA MER1_type -2 222 58 1 1382 446 70 0 6 chr9 104587560 104587638 -19488534 - L1_Mm LINE L1 -536 3378 3303 1 1382 2748 65 0 3 chr9 104587638 104587991 -19488181 + L1_Mus1 LINE L1 6216 6567 0 1 1382 27 73 0 0 chr9 104588076 104588131 -19488041 + AT_rich Low_complexity Low_complexity 1 55 0 1 1382 490 273 18 58 chr9 104588136 104588307 -19487865 + RSINE1 SINE B4 2 165 0 1 1382 182 91 30 0 chr9 104588991 104589024 -19487148 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1382 1341 159 0 9 chr9 104589766 104589994 -19486178 + URR1A DNA MER1_type 1 226 0 1 1382 279 133 0 0 chr9 104591739 104591784 -19484388 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1382 450 369 24 12 chr9 104591784 104592031 -19484141 - Lx9 LINE L1 -182 7462 7213 1 1382 2269 195 102 48 chr9 104592032 104592811 -19483361 + RLTR13D3 LTR ERVK 1 1114 0 1 1382 963 286 37 28 chr9 104592870 104593223 -19482949 - Lx9 LINE L1 -484 7160 6805 1 1382 339 339 111 82 chr9 104593511 104593755 -19482417 - LTR33A_ LTR ERVL -176 355 105 1 1382 2136 161 21 13 chr9 104594099 104594488 -19481684 - ORR1B1 LTR MaLR 0 394 3 1 1382 1004 142 11 0 chr9 104594997 104595173 -19480999 + CT-rich Low_complexity Low_complexity 3 180 0 1 1382 519 17 0 0 chr9 104595174 104595234 -19480938 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 1 1382 233 188 0 0 chr9 104595253 104595301 -19480871 - B3 SINE B2 -1 215 168 1 1383 30 0 0 0 chr9 104596032 104596062 -19480110 + AT_rich Low_complexity Low_complexity 1 30 0 1 1383 283 302 54 0 chr9 104597345 104597474 -19478698 - L1ME1 LINE L1 0 6179 6044 1 1383 22 80 0 0 chr9 104597474 104597524 -19478648 + AT_rich Low_complexity Low_complexity 1 50 0 1 1383 1574 290 58 48 chr9 104597530 104598976 -19477196 - L1MA10 LINE L1 -10 6324 4847 1 1383 236 218 18 18 chr9 104599347 104599403 -19476769 + MIR SINE MIR 67 122 -86 1 1383 326 322 96 27 chr9 104599481 104599669 -19476503 + MIRb SINE MIR 58 258 -10 1 1383 240 111 0 0 chr9 104599747 104599783 -19476389 + (TATG)n Simple_repeat Simple_repeat 4 39 0 1 1383 234 0 0 0 chr9 104600150 104600176 -19475996 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1383 383 353 13 38 chr9 104600707 104600866 -19475306 - MLT1G3 LTR MaLR -72 523 369 1 1383 293 304 44 57 chr9 104601324 104601510 -19474662 - MIRb SINE MIR -58 204 13 1 1383 618 209 0 0 chr9 104601676 104601810 -19474362 + CT-rich Low_complexity Low_complexity 3 136 0 1 1383 685 205 0 43 chr9 104601814 104601952 -19474220 - B1_Mus2 SINE Alu -14 133 2 1 1383 587 318 172 3 chr9 104602098 104602429 -19473743 - L2a LINE L2 -5 3421 3035 1 1383 310 232 31 31 chr9 104602511 104602609 -19473563 + L1MB1 LINE L1 6062 6159 -30 1 1383 233 344 45 38 chr9 104602654 104602787 -19473385 - L2a LINE L2 -414 3005 2872 1 1383 576 302 90 31 chr9 104602811 104602996 -19473176 - RMER15 LTR ERVL -15 560 361 1 1383 1541 232 65 17 chr9 104602996 104603351 -19472821 - ORR1D1 LTR MaLR -2 372 1 1 1383 576 302 90 31 chr9 104603351 104603421 -19472751 - RMER15 LTR ERVL -215 360 291 1 1383 183 100 0 0 chr9 104603998 104604028 -19472144 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1383 253 0 54 0 chr9 104604468 104604505 -19471667 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1383 198 359 109 22 chr9 104604622 104604764 -19471408 + MIRc SINE MIR 19 167 -95 1 1383 24 32 0 0 chr9 104604768 104604799 -19471373 + AT_rich Low_complexity Low_complexity 1 31 0 1 1383 26 30 0 0 chr9 104604841 104604874 -19471298 + AT_rich Low_complexity Low_complexity 1 33 0 1 1383 6501 75 28 4 chr9 104604899 104606083 -19470089 + L1Md_F2 LINE L1 5398 6582 0 1 1383 239 281 177 81 chr9 104606449 104606573 -19469599 - MTEb LTR MaLR -243 136 1 1 1383 192 77 0 0 chr9 104606666 104606692 -19469480 + (TATAA)n Simple_repeat Simple_repeat 3 28 0 1 1383 4499 146 5 4 chr9 104607194 104607978 -19468194 - Lx LINE L1 -426 5457 4673 1 1383 5724 116 28 8 chr9 104607977 104609069 -19467103 + Lx LINE L1 5453 6561 -5 1 1383 466 263 16 68 chr9 104609048 104609240 -19466932 - Lx7 LINE L1 -361 7335 7154 1 1383 200 231 25 25 chr9 104609241 104609321 -19466851 + T-rich Low_complexity Low_complexity 5 84 0 1 1383 22 35 0 0 chr9 104609472 104609501 -19466671 + AT_rich Low_complexity Low_complexity 1 29 0 1 1383 1129 299 117 5 chr9 104609834 104610237 -19465935 - MER90a LTR ERV1 -161 453 6 2 1383 767 150 7 0 chr9 104610441 104610581 -19465591 + CT-rich Low_complexity Low_complexity 2 142 0 2 1383 929 90 96 7 chr9 104610585 104610720 -19465452 - B1_Mm SINE Alu 0 147 1 2 1383 4702 176 26 5 chr9 104611299 104612137 -19464035 - Lx5 LINE L1 0 7050 6195 2 1383 4103 147 16 7 chr9 104612137 104612809 -19463363 + L1_Mur2 LINE L1 3427 4104 -1773 2 1383 282 116 0 0 chr9 104613773 104613816 -19462356 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 1383 290 385 6 6 chr9 104614293 104614468 -19461704 + CT-rich Low_complexity Low_complexity 1 175 0 2 1383 702 256 47 41 chr9 104614613 104614885 -19461287 - Lx7 LINE L1 -1777 5919 5639 2 1383 922 333 61 35 chr9 104615026 104615686 -19460486 - L1ME3A LINE L1 -56 6117 5441 2 1383 228 333 0 14 chr9 104615687 104615760 -19460412 - ID4 SINE ID -11 72 1 2 1383 385 261 17 70 chr9 104615841 104615988 -19460184 - PB1D7 SINE Alu 0 149 7 2 1383 1406 181 58 83 chr9 104616029 104616354 -19459818 - RMER1B Other Other -5 1061 745 2 1383 860 201 32 0 chr9 104616358 104616512 -19459660 + RMER1B Other Other 584 742 -324 2 1383 27 62 0 0 chr9 104616623 104616671 -19459501 + AT_rich Low_complexity Low_complexity 1 48 0 2 1383 239 163 41 82 chr9 104617198 104617345 -19458827 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 2 1383 661 253 34 11 chr9 104617369 104617545 -19458627 - B3A SINE B2 -16 182 3 2 1383 214 290 73 31 chr9 104618785 104618881 -19457291 - MIRb SINE MIR -80 188 89 2 1383 294 314 86 0 chr9 104619000 104619105 -19457067 + L2a LINE L2 3309 3422 -4 2 1383 260 257 236 23 chr9 104619852 104620111 -19456061 - LTR50 LTR ERVL -1 794 481 2 1383 425 254 114 15 chr9 104620099 104620231 -19455941 + MTEa LTR MaLR 6 150 -229 2 1383 336 293 64 47 chr9 104620498 104620670 -19455502 - LTR50 LTR ERVL -566 229 55 2 1383 227 31 31 0 chr9 104620959 104620991 -19455181 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1383 967 285 33 4 chr9 104621020 104621291 -19454881 - B4A SINE B4 -8 284 6 2 1383 377 323 0 0 chr9 104621499 104621598 -19454574 - ID_B1 SINE B4 -46 178 80 2 1383 825 268 239 5 chr9 104622209 104622606 -19453566 + MLT2B4 LTR ERVL 2 491 -65 2 1383 301 317 0 19 chr9 104622621 104622727 -19453445 + (CATATA)n Simple_repeat Simple_repeat 1 104 0 2 1383 1431 48 37 16 chr9 104622727 104622916 -19453256 + B2_Mm2 SINE B2 2 194 -1 2 1383 582 85 0 0 chr9 104622961 104623055 -19453117 + (CA)n Simple_repeat Simple_repeat 1 94 0 2 1383 338 317 58 43 chr9 104623092 104623280 -19452892 - MLT1G1 LTR MaLR -388 191 1 2 1383 232 327 62 110 chr9 104624043 104624270 -19451902 - ORR1D2 LTR MaLR -58 312 97 2 1383 200 310 23 94 chr9 104625008 104625136 -19451036 + L2c LINE L2 3269 3387 0 2 1383 592 297 6 33 chr9 104626746 104626927 -19449245 + ORR1E LTR MaLR 6 181 -178 2 1383 2560 144 10 3 chr9 104627047 104627438 -19448734 - ORR1B1 LTR MaLR 0 394 1 2 1383 285 303 97 14 chr9 104627740 104627884 -19448288 - MIR3 SINE MIR -12 196 41 2 1383 248 204 0 85 chr9 104629529 104629577 -19446595 - RMER15 LTR ERVL 0 575 533 2 1383 482 258 6 51 chr9 104629577 104629753 -19446419 - RNLTR23 LTR ERVK 0 642 475 2 1383 180 0 0 0 chr9 104630000 104630020 -19446152 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1383 1950 96 73 0 chr9 104630021 104630335 -19445837 - RMER15 LTR ERVL -45 530 194 2 1383 297 210 73 12 chr9 104630338 104630420 -19445752 - ORR1E LTR MaLR -248 111 25 2 1383 243 0 0 0 chr9 104630545 104630572 -19445600 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1383 310 336 32 8 chr9 104631646 104631769 -19444403 - MER5B DNA MER1_type -3 175 50 2 1383 320 178 14 0 chr9 104631769 104631842 -19444330 + CT-rich Low_complexity Low_complexity 4 77 0 2 1383 352 237 73 73 chr9 104631851 104631943 -19444229 - B4 SINE B4 -160 132 39 2 1383 1776 209 17 8 chr9 104631943 104632305 -19443867 - ORR1B2 LTR MaLR -2 365 1 2 1383 352 237 73 73 chr9 104632305 104632335 -19443837 - B4 SINE B4 -254 38 10 2 1383 847 222 33 37 chr9 104633082 104633297 -19442875 + B3 SINE B2 3 216 0 2 1383 184 286 83 52 chr9 104633953 104634049 -19442123 - MIR3 SINE MIR -5 203 105 2 1383 228 263 113 63 chr9 104634640 104634782 -19441390 + MIRc SINE MIR 19 167 -101 2 1383 1973 145 9 9 chr9 104634820 104635161 -19441011 - ORR1B2 LTR MaLR -8 359 19 2 1383 387 0 0 0 chr9 104635161 104635204 -19440968 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2 1383 474 65 0 0 chr9 104635212 104635274 -19440898 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2 1383 561 341 0 0 chr9 104635285 104635449 -19440723 - RSINE1 SINE B4 0 165 2 2 1383 208 180 0 20 chr9 104636530 104636581 -19439591 + T-rich Low_complexity Low_complexity 1 50 0 2 1383 849 174 0 32 chr9 104636581 104636735 -19439437 - B1_Mur3 SINE Alu 0 149 1 2 1383 235 296 0 58 chr9 104637467 104637553 -19438619 + GA-rich Low_complexity Low_complexity 5 85 0 2 1383 479 221 125 8 chr9 104637675 104637803 -19438369 - ID_B1 SINE B4 -1 223 81 2 1383 351 0 0 0 chr9 104638023 104638062 -19438110 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1383 1119 79 0 0 chr9 104638233 104638373 -19437799 + B1_Mus1 SINE Alu 1 140 -8 2 1383 189 74 0 0 chr9 104638374 104638401 -19437771 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 2 1383 293 64 43 0 chr9 104638410 104638457 -19437715 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1383 642 315 12 20 chr9 104638459 104638705 -19437467 - L1M5 LINE L1 -465 5699 5456 2 1383 395 198 172 0 chr9 104639346 104639462 -19436710 - Lx4A LINE L1 0 7058 6923 2 1383 7618 91 8 13 chr9 104639465 104640755 -19435417 + L1_Mus3 LINE L1 5343 6630 -8 2 1383 189 0 0 0 chr9 104640773 104640794 -19435378 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1383 272 273 0 0 chr9 104640796 104640862 -19435310 - ID4 SINE ID -17 66 1 2 1383 505 174 0 0 chr9 104641265 104641351 -19434821 + B3 SINE B2 15 100 -116 2 1383 261 0 0 0 chr9 104641526 104641555 -19434617 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1383 2126 171 39 103 chr9 104641663 104641793 -19434379 - RMER1C Other Other 0 1342 1224 2 1383 492 18 0 0 chr9 104641793 104641850 -19434322 + (GGA)n Simple_repeat Simple_repeat 3 59 0 2 1383 1030 128 0 16 chr9 104641855 104642038 -19434134 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1383 2126 171 39 103 chr9 104642038 104642437 -19433735 - RMER1C Other Other -119 1223 841 2 1383 22 35 0 0 chr9 104642440 104642469 -19433703 + AT_rich Low_complexity Low_complexity 1 29 0 2 1383 283 263 65 17 chr9 104642960 104643087 -19433085 - L1MD LINE L1 -2261 3885 3753 2 1383 186 250 0 19 chr9 104644400 104644453 -19431719 + MIR SINE MIR 172 223 -39 2 1383 864 0 0 0 chr9 104644705 104644801 -19431371 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 1383 1308 126 97 0 chr9 104645879 104646085 -19430087 + URR1A DNA MER1_type 1 226 0 2 1383 3217 63 5 0 chr9 104646217 104646615 -19429557 - MTB LTR MaLR 0 400 1 2 1383 288 333 0 50 chr9 104646837 104646938 -19429234 + B4A SINE B4 3 98 -194 2 1383 186 71 0 0 chr9 104647003 104647031 -19429141 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 2 1383 507 257 9 0 chr9 104647124 104647233 -19428939 + PB1 SINE Alu 5 114 -13 2 1383 206 301 118 46 chr9 104647408 104647603 -19428569 - MIRb SINE MIR -35 233 21 2 1383 889 273 145 31 chr9 104648162 104648286 -19427886 + MTE2b LTR MaLR 13 166 -213 2 1383 828 80 0 0 chr9 104648286 104648399 -19427773 + (GA)n Simple_repeat Simple_repeat 1 113 0 2 1383 889 273 145 31 chr9 104648399 104648592 -19427580 + MTE2b LTR MaLR 167 365 -14 2 1383 827 210 138 0 chr9 104649174 104649355 -19426817 - B3 SINE B2 -5 211 6 2 1383 600 260 107 6 chr9 104649764 104649942 -19426230 + B4 SINE B4 95 290 -2 2 1383 459 0 0 0 chr9 104649962 104650013 -19426159 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1383 645 317 77 26 chr9 104651040 104651312 -19424860 + B4A SINE B4 7 292 0 2 1383 221 220 17 17 chr9 104652507 104652567 -19423605 + B4 SINE B4 4 63 -229 2 1383 1106 208 0 31 chr9 104652567 104652790 -19423382 + B3 SINE B2 1 216 0 2 1383 718 304 68 9 chr9 104652818 104653040 -19423132 + B4 SINE B4 48 282 -10 2 1383 338 0 24 0 chr9 104653063 104653105 -19423067 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1383 184 304 97 10 chr9 104653761 104653864 -19422308 - MIR SINE MIR -25 237 126 2 1383 300 250 165 24 chr9 104653937 104654064 -19422108 + B1F2 SINE Alu 2 146 -3 2 1383 1169 276 95 11 chr9 104654356 104654800 -19421372 - L1MA4A LINE L1 -372 5931 5451 2 1383 330 340 72 5 chr9 104655378 104655573 -19420599 + MIRb SINE MIR 27 234 -34 2 1383 536 246 38 8 chr9 104656716 104656847 -19419325 + RSINE1 SINE B4 2 136 -29 2 1383 396 0 0 0 chr9 104656851 104656895 -19419277 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1383 281 342 0 0 chr9 104657090 104657163 -19419009 - ID4_ SINE ID -8 75 3 2 1383 2212 34 0 11 chr9 104657410 104657682 -19418490 - L1Md_F2 LINE L1 0 6582 6314 2 1383 505 281 0 15 chr9 104660876 104661006 -19415166 + RSINE1 SINE B4 3 130 -35 2 1383 210 71 0 0 chr9 104661040 104661068 -19415104 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 2 1383 268 258 21 0 chr9 104661137 104661234 -19414938 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1383 700 281 25 10 chr9 104661405 104661603 -19414569 + ID_B1 SINE B4 12 212 -12 2 1383 210 229 0 0 chr9 104662113 104662161 -19414011 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1383 748 307 8 17 chr9 104662178 104662413 -19413759 - B4 SINE B4 -12 280 48 2 1383 352 264 146 28 chr9 104662753 104662897 -19413275 - RSINE1 SINE B4 0 165 5 3 1383 488 289 9 9 chr9 104662994 104663109 -19413063 - RSINE1 SINE B4 -20 145 31 3 1383 2057 309 78 15 chr9 104663158 104664019 -19412153 - Lx8 LINE L1 0 7473 6559 3 1383 1002 287 3 42 chr9 104664016 104664300 -19411872 + Lx8 LINE L1 6218 6490 -983 3 1383 24 67 0 0 chr9 104664646 104664691 -19411481 + AT_rich Low_complexity Low_complexity 1 45 0 3 1383 369 0 0 0 chr9 104665526 104665567 -19410605 + (TTGG)n Simple_repeat Simple_repeat 3 43 0 3 1383 329 294 36 91 chr9 104665677 104665898 -19410274 - L1MD2 LINE L1 -342 6017 5809 3 1383 1835 148 19 16 chr9 104666090 104666406 -19409766 + Lx3C LINE L1 6660 6976 0 3 1383 261 185 0 0 chr9 104666412 104666477 -19409695 + GA-rich Low_complexity Low_complexity 3 67 0 3 1383 264 302 10 0 chr9 104666581 104666677 -19409495 - L1MD LINE L1 -2290 3856 3760 3 1383 315 49 0 0 chr9 104668083 104668124 -19408048 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1383 552 269 31 0 chr9 104668143 104668273 -19407899 - B1_Mus2 SINE Alu -5 142 9 3 1383 288 254 215 77 chr9 104668288 104668420 -19407752 - Lx9 LINE L1 -4 7640 7488 3 1383 464 72 0 14 chr9 104668420 104668490 -19407682 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3 1383 288 254 215 77 chr9 104668490 104668617 -19407555 - Lx9 LINE L1 -157 7487 7346 3 1383 464 146 11 0 chr9 104669583 104669672 -19406500 + GA-rich Low_complexity Low_complexity 1 90 0 3 1383 392 277 145 29 chr9 104670231 104670350 -19405822 + Lx8 LINE L1 7192 7335 -138 3 1383 222 37 0 0 chr9 104670350 104670377 -19405795 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1383 392 277 145 29 chr9 104670377 104670499 -19405673 + Lx8 LINE L1 7336 7461 -12 3 1383 225 0 0 0 chr9 104670509 104670534 -19405638 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 1383 216 97 0 0 chr9 104670610 104670641 -19405531 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 3 1383 643 323 82 40 chr9 104670641 104670944 -19405228 - MLT1A0 LTR MaLR -36 329 14 3 1383 473 302 163 48 chr9 104670957 104671270 -19404902 - MLT1A0-int LTR MaLR 0 1735 1387 3 1383 419 360 7 7 chr9 104672089 104672229 -19403943 + ID_B1 SINE B4 84 223 -1 3 1383 244 295 116 54 chr9 104672439 104672586 -19403586 - L2a LINE L2 0 3426 3271 3 1383 606 250 103 0 chr9 104672586 104672722 -19403450 + RSINE1 SINE B4 12 161 -4 3 1383 243 0 0 0 chr9 104673024 104673051 -19403121 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1383 216 0 0 0 chr9 104673051 104673074 -19403098 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1383 387 60 0 0 chr9 104673087 104673137 -19403035 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 1383 679 261 7 7 chr9 104674322 104674457 -19401715 + B1F SINE Alu 5 140 -9 3 1383 270 0 0 0 chr9 104674457 104674487 -19401685 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1383 379 304 21 26 chr9 104674620 104674809 -19401363 + L1ME2 LINE L1 5724 5911 -253 3 1383 225 0 0 0 chr9 104674914 104674939 -19401233 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 3 1383 284 215 31 0 chr9 104674965 104675030 -19401142 - RSINE1 SINE B4 -88 77 11 3 1383 186 265 61 0 chr9 104675500 104675549 -19400623 + MIR SINE MIR 62 113 -149 3 1383 1173 89 7 0 chr9 104676152 104676298 -19399874 + B1_Mus1 SINE Alu 1 147 -1 3 1383 657 92 0 0 chr9 104676407 104676505 -19399667 + (CA)n Simple_repeat Simple_repeat 2 99 0 3 1383 251 254 14 14 chr9 104677350 104677422 -19398750 + MLT1N2 LTR MaLR 486 557 -5 3 1383 575 286 179 0 chr9 104677719 104677887 -19398285 - B4 SINE B4 -93 199 2 3 1383 277 337 137 37 chr9 104678069 104678368 -19397804 + LTR16A LTR ERVL 31 359 -92 3 1383 263 326 36 28 chr9 104678470 104678615 -19397557 - MIR3 SINE MIR -32 176 31 3 1383 644 0 13 0 chr9 104679046 104679122 -19397050 + (GA)n Simple_repeat Simple_repeat 1 77 0 3 1383 880 315 15 11 chr9 104679571 104679844 -19396328 - B4A SINE B4 -18 274 1 3 1383 207 239 0 0 chr9 104680038 104680105 -19396067 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1383 2900 82 8 8 chr9 104681859 104682242 -19393930 + L1_Mus3 LINE L1 6242 6624 -14 3 1383 231 103 0 0 chr9 104682242 104682281 -19393891 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3 1383 24 32 0 0 chr9 104682281 104682312 -19393860 + AT_rich Low_complexity Low_complexity 1 31 0 3 1383 195 42 0 0 chr9 104683268 104683292 -19392880 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 1383 342 241 11 46 chr9 104684248 104684335 -19391837 + MIR3 SINE MIR 84 167 -41 3 1383 441 0 0 0 chr9 104684746 104684795 -19391377 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1383 231 360 37 69 chr9 104686130 104686318 -19389854 + MLT1G3 LTR MaLR 13 194 -401 3 1383 4344 21 0 2 chr9 104686436 104686908 -19389264 + L1Md_F2 LINE L1 6099 6569 -13 3 1383 1117 138 193 0 chr9 104686984 104687165 -19389007 + B3 SINE B2 1 216 0 3 1383 27 0 0 0 chr9 104687165 104687192 -19388980 + AT_rich Low_complexity Low_complexity 1 27 0 3 1383 237 364 0 13 chr9 104687244 104687322 -19388850 - ID4_ SINE ID 0 83 7 3 1383 298 319 21 0 chr9 104687820 104687914 -19388258 - MLT1H LTR MaLR -22 527 432 3 1383 507 280 37 25 chr9 104687986 104688147 -19388025 - MLT1H LTR MaLR -274 275 113 3 1383 4033 123 2 111 chr9 104688911 104689696 -19386476 + RMER6A LTR ERVK 57 756 0 3 1383 246 258 65 0 chr9 104689796 104689858 -19386314 - L1M5 LINE L1 -474 5720 5655 3 1383 240 250 33 0 chr9 104689932 104689992 -19386180 + MIRm SINE MIR 202 263 -13 3 1383 385 306 54 44 chr9 104690120 104690521 -19385651 - L1M4c LINE L1 -3685 2691 2284 3 1383 703 306 45 22 chr9 104690717 104691070 -19385102 + L1MA4A LINE L1 5252 5645 -655 3 1383 28 29 0 0 chr9 104691978 104692013 -19384159 + AT_rich Low_complexity Low_complexity 1 35 0 3 1383 430 250 169 30 chr9 104692072 104692303 -19383869 + L1MA4A LINE L1 5665 5927 -376 3 1383 330 123 0 0 chr9 104692318 104692375 -19383797 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1383 636 270 326 47 chr9 104692617 104692929 -19383243 - MTD LTR MaLR -20 399 1 3 1383 366 270 45 0 chr9 104692969 104693080 -19383092 + PB1D10 SINE Alu 2 117 0 3 1383 285 98 0 0 chr9 104693994 104694035 -19382137 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1383 695 261 0 0 chr9 104695036 104695178 -19380994 + B1F SINE Alu 1 142 -7 3 1383 22 35 0 0 chr9 104695805 104695834 -19380338 + AT_rich Low_complexity Low_complexity 1 29 0 3 1383 759 200 52 0 chr9 104696086 104696241 -19379931 + Lx9 LINE L1 7315 7477 -167 3 1383 380 325 191 30 chr9 104697584 104697900 -19378272 + MLT1A LTR MaLR 4 370 -4 3 1383 1048 141 0 20 chr9 104698625 104698777 -19377395 + B1_Mur4 SINE Alu 1 149 -1 3 1383 578 255 55 67 chr9 104700336 104700500 -19375672 + B3A SINE B2 1 162 -36 3 1383 1097 71 24 0 chr9 104700503 104700759 -19375413 + (CA)n Simple_repeat Simple_repeat 1 262 0 3 1383 285 29 0 0 chr9 104700768 104700802 -19375370 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1383 206 381 113 14 chr9 104701283 104701424 -19374748 - L2b LINE L2 -229 3146 2992 3 1383 611 269 59 51 chr9 104701708 104701881 -19374291 + ID_B1 SINE B4 48 207 -17 3 1383 1069 297 145 28 chr9 104702107 104702975 -19373197 + Charlie2b DNA MER1_type 1807 2776 -6 3 1383 373 229 31 10 chr9 104703202 104703299 -19372873 - L1MB3 LINE L1 -17 6166 6068 3 1383 190 254 30 60 chr9 104703807 104703874 -19372298 - L2b LINE L2 -1 3374 3310 3 1383 306 358 72 16 chr9 104704992 104705185 -19370987 - MIR SINE MIR -36 226 23 3 1383 198 0 0 0 chr9 104706116 104706138 -19370034 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1383 25 51 0 0 chr9 104706399 104706438 -19369734 + AT_rich Low_complexity Low_complexity 1 39 0 3 1383 414 279 9 9 chr9 104707600 104707705 -19368467 - RMER10B LTR ERVL -23 375 271 3 1383 4150 96 15 5 chr9 104708026 104708622 -19367550 - L1_Mur2 LINE L1 -618 5259 4658 3 1383 363 198 0 0 chr9 104708624 104708705 -19367467 + Lx4A LINE L1 6978 7058 0 3 1383 396 292 104 12 chr9 104708822 104708985 -19367187 + MIRb SINE MIR 69 246 -22 3 1383 1257 227 54 17 chr9 104709189 104709502 -19366670 + MTD LTR MaLR 1 347 -53 3 1383 876 245 52 12 chr9 104711013 104711344 -19364828 - ORR1D1 LTR MaLR -3 356 1 3 1383 228 231 103 0 chr9 104711384 104711462 -19364710 - LTR81A LTR ERV1? -1153 197 112 3 1383 676 276 7 7 chr9 104711746 104711888 -19364284 - B3A SINE B2 -54 144 3 3 1383 510 266 100 7 chr9 104711919 104712059 -19364113 + RSINE1 SINE B4 4 156 -9 3 1383 433 318 103 0 chr9 104712969 104713095 -19363077 + ID_B1 SINE B4 78 216 -8 3 1383 1321 175 9 5 chr9 104713812 104714036 -19362136 + URR1A DNA MER1_type 2 226 0 3 1383 225 333 36 29 chr9 104714264 104714403 -19361769 + MTEb LTR MaLR 240 379 0 3 1383 288 0 0 0 chr9 104714558 104714590 -19361582 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1383 2743 202 8 116 chr9 104714990 104715734 -19360438 + Lx7 LINE L1 7033 7696 0 3 1383 22 0 0 0 chr9 104715768 104715790 -19360382 + AT_rich Low_complexity Low_complexity 1 22 0 3 1383 1668 291 79 25 chr9 104715918 104716527 -19359645 - Lx8 LINE L1 -2 7471 6830 3 1383 237 292 0 0 chr9 104716641 104716689 -19359483 - MLT1L LTR MaLR 0 610 563 3 1383 243 308 66 0 chr9 104716725 104716816 -19359356 - MLT1L LTR MaLR -167 443 347 3 1383 576 0 0 0 chr9 104716865 104716929 -19359243 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1383 897 119 0 0 chr9 104717640 104717791 -19358381 + (CA)n Simple_repeat Simple_repeat 2 152 0 3 1383 2460 201 56 6 chr9 104718953 104719454 -19356718 - RLTR11A2 LTR ERVK 0 527 2 3 1383 648 297 18 106 chr9 104719614 104719889 -19356283 + B4A SINE B4 42 292 0 3 1383 697 234 192 0 chr9 104720106 104720273 -19355899 + B3 SINE B2 2 200 -16 3 1383 333 0 0 0 chr9 104720275 104720312 -19355860 + (TAA)n Simple_repeat Simple_repeat 1 37 0 4 1383 255 333 0 0 chr9 104722367 104722430 -19353742 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1383 300 158 0 0 chr9 104722903 104722979 -19353193 + GA-rich Low_complexity Low_complexity 2 77 0 4 1383 667 303 113 0 chr9 104723411 104723596 -19352576 + ID_B1 SINE B4 6 211 -13 4 1383 359 378 51 5 chr9 104724267 104724464 -19351708 - MER110 LTR ERV1 -157 334 129 4 1383 486 0 0 0 chr9 104724497 104724551 -19351621 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1383 340 243 37 18 chr9 104725105 104725214 -19350958 - L1M5 LINE L1 -468 5656 5546 4 1383 228 240 0 0 chr9 104725269 104725319 -19350853 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 4 1383 324 333 58 62 chr9 104725702 104725926 -19350246 + MIR SINE MIR 11 233 -29 4 1384 318 165 25 12 chr9 104727817 104727897 -19348275 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 4 1384 217 271 0 0 chr9 104728111 104728170 -19348002 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1384 204 311 35 62 chr9 104728289 104728402 -19347770 + MIR SINE MIR 13 122 -140 4 1384 328 356 65 35 chr9 104728765 104728995 -19347177 + L2a LINE L2 2840 3076 -343 4 1384 372 266 85 0 chr9 104729015 104729109 -19347063 + PB1 SINE Alu 1 102 -25 4 1384 458 276 16 16 chr9 104729209 104729334 -19346838 + RSINE1 SINE B4 6 130 -35 4 1384 209 315 90 27 chr9 104730074 104730185 -19345987 + L2a LINE L2 3282 3399 -27 4 1384 547 227 53 23 chr9 104730424 104730555 -19345617 + ID_B1 SINE B4 87 221 -3 4 1384 271 127 16 113 chr9 104730502 104730564 -19345608 + PB1D9 SINE Alu 65 120 0 4 1384 206 128 0 25 chr9 104731419 104731459 -19344713 + T-rich Low_complexity Low_complexity 2 40 0 4 1384 7984 60 5 0 chr9 104731761 104732805 -19343367 + L1_Mus1 LINE L1 5519 6567 0 4 1384 21 0 0 0 chr9 104732830 104732851 -19343321 + AT_rich Low_complexity Low_complexity 1 21 0 4 1384 25 0 0 0 chr9 104733004 104733029 -19343143 + AT_rich Low_complexity Low_complexity 1 25 0 4 1384 216 261 120 51 chr9 104733413 104733530 -19342642 + MIRb SINE MIR 96 220 -48 4 1384 366 238 0 79 chr9 104734257 104734381 -19341791 + B3A SINE B2 9 165 -33 4 1384 462 18 0 0 chr9 104734381 104734436 -19341736 + (CTCA)n Simple_repeat Simple_repeat 4 58 0 4 1384 366 256 0 118 chr9 104734436 104734457 -19341715 + B3A SINE B2 166 184 -14 4 1384 231 36 0 0 chr9 104734552 104734580 -19341592 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 4 1384 1633 50 0 0 chr9 104734604 104734786 -19341386 - B2_Mm1a SINE B2 -11 182 1 4 1384 432 221 185 13 chr9 104736573 104736724 -19339448 - MER119 DNA MER1_type -32 551 375 4 1384 2218 106 6 3 chr9 104736734 104737055 -19339117 + ORR1A2 LTR MaLR 6 327 0 4 1384 389 283 8 24 chr9 104737055 104737176 -19338996 - MER119 DNA MER1_type -210 373 255 4 1384 449 222 12 0 chr9 104738117 104738198 -19337974 - B3A SINE B2 -114 84 3 4 1384 715 283 53 16 chr9 104738631 104738821 -19337351 + B3A SINE B2 2 198 0 4 1384 643 289 0 67 chr9 104738920 104739128 -19337044 - B3A SINE B2 -1 197 4 4 1384 265 233 78 0 chr9 104739225 104739315 -19336857 - Lx9 LINE L1 -31 7613 7517 4 1384 486 0 0 0 chr9 104739315 104739369 -19336803 + (CATA)n Simple_repeat Simple_repeat 2 55 0 4 1384 617 219 39 0 chr9 104739429 104739557 -19336615 - Lx9 LINE L1 -405 7239 7107 4 1384 306 305 73 67 chr9 104740114 104740279 -19335893 + L1MD1 LINE L1 34 199 -6434 4 1384 677 309 108 73 chr9 104740548 104741504 -19334668 + L1MD1 LINE L1 968 1956 -4677 4 1384 3193 245 30 114 chr9 104741559 104741701 -19334471 - Lx8 LINE L1 -110 7363 7246 4 1384 312 27 0 0 chr9 104741701 104741738 -19334434 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1384 3193 245 30 114 chr9 104741738 104742708 -19333464 - Lx8 LINE L1 -228 7245 6344 4 1384 539 202 42 8 chr9 104742774 104742894 -19333278 + MTE2a LTR MaLR 248 371 -8 4 1384 366 278 80 43 chr9 104742966 104743154 -19333018 + L1MD1 LINE L1 4438 4632 -1905 4 1384 1073 184 24 38 chr9 104743271 104743480 -19332692 + B3 SINE B2 4 209 -7 4 1384 2021 247 100 8 chr9 104743490 104744098 -19332074 + L1MD1 LINE L1 5667 6326 -307 4 1384 4235 44 10 16 chr9 104744098 104744603 -19331569 - L1Md_F3 LINE L1 0 6584 6083 4 1384 2021 247 100 8 chr9 104744603 104744634 -19331538 + L1MD1 LINE L1 6327 6364 -269 4 1384 294 29 0 0 chr9 104744645 104744680 -19331492 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1384 1060 243 23 27 chr9 104744686 104744948 -19331224 + B4 SINE B4 28 288 -4 4 1384 359 31 101 72 chr9 104744951 104745020 -19331152 + HAL1-3A_ME LINE L1 1976 2046 -812 4 1384 235 242 63 99 chr9 104745069 104745211 -19330961 + L1MD1 LINE L1 6495 6631 -2 4 1384 377 342 37 25 chr9 104745674 104745995 -19330177 - L1M5 LINE L1 -2415 3731 3407 4 1384 705 205 0 0 chr9 104746149 104746411 -19329761 + (TG)n Simple_repeat Simple_repeat 1 262 0 4 1384 612 298 56 95 chr9 104746411 104746715 -19329457 - B4A SINE B4 0 292 1 4 1384 700 236 4 2 chr9 104746784 104746922 -19329250 - B1F1 SINE Alu -7 142 3 4 1384 315 311 24 96 chr9 104746922 104746969 -19329203 - MT2B LTR ERVL -443 158 124 4 1384 227 208 0 86 chr9 104747389 104747402 -19328770 - MLT2B4 LTR ERVL -361 53 43 4 1384 477 0 0 0 chr9 104747402 104747455 -19328717 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1384 234 0 0 0 chr9 104747455 104747480 -19328692 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1384 237 139 0 0 chr9 104747480 104747523 -19328649 - MLT2B4 LTR ERVL -513 43 1 4 1384 312 317 30 109 chr9 104747524 104747726 -19328446 - MLT1L LTR MaLR -223 387 202 4 1384 216 376 82 6 chr9 104748650 104748808 -19327364 - L2 LINE L2 -1027 2392 2223 4 1384 423 0 0 0 chr9 104749412 104749459 -19326713 + (TATG)n Simple_repeat Simple_repeat 2 48 0 4 1384 601 216 219 13 chr9 104749464 104749619 -19326553 - ID_B1 SINE B4 -14 210 24 4 1384 791 131 0 7 chr9 104749619 104749757 -19326415 + (TTCC)n Simple_repeat Simple_repeat 4 140 0 4 1384 636 137 42 0 chr9 104749759 104749854 -19326318 - B1_Mus2 SINE Alu -7 140 42 4 1384 443 301 132 66 chr9 104750096 104750324 -19325848 - MER74A LTR ERVL -189 369 127 4 1384 297 75 0 0 chr9 104750334 104750374 -19325798 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 4 1384 440 19 0 0 chr9 104750385 104750437 -19325735 + L1Md_F2 LINE L1 5252 5303 -580 4 1384 4401 111 71 0 chr9 104750434 104751109 -19325063 + L1Md_F LINE L1 221 943 -5576 4 1384 8095 56 0 0 chr9 104751105 104752093 -19324079 + L1Md_F2 LINE L1 4599 5586 -297 4 1384 8666 43 1 3 chr9 104752093 104753091 -19323081 + L1Md_F2 LINE L1 5587 6582 0 4 1384 2397 64 0 0 chr9 104753091 104753386 -19322786 + L1Md_F2 LINE L1 5291 5585 -298 4 1384 8587 52 0 4 chr9 104753387 104754387 -19321785 + L1Md_F2 LINE L1 5587 6582 0 4 1384 2264 101 59 0 chr9 104754596 104754903 -19321269 - ORR1A2 LTR MaLR -2 325 1 4 1384 835 151 280 51 chr9 104754974 104755149 -19321023 + B3 SINE B2 2 216 0 4 1384 366 80 0 0 chr9 104757549 104757599 -19318573 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1384 387 0 0 0 chr9 104758037 104758080 -19318092 + (TTA)n Simple_repeat Simple_repeat 3 45 0 4 1384 238 297 76 37 chr9 104758240 104758391 -19317781 + MIRm SINE MIR 22 188 -88 4 1384 793 176 222 22 chr9 104758591 104758771 -19317401 + B3 SINE B2 1 216 0 4 1384 434 226 55 28 chr9 104758795 104758904 -19317268 + PB1D10 SINE Alu 6 117 0 4 1384 1116 133 0 0 chr9 104758962 104759142 -19317030 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1384 7843 175 45 10 chr9 104759816 104761355 -19314817 - Lx5 LINE L1 -1 7049 5474 4 1384 309 122 0 0 chr9 104761331 104761372 -19314800 - L1_Mus4 LINE L1 -500 6136 6096 4 1384 13881 146 6 10 chr9 104761394 104762657 -19313515 - L1_Mur2 LINE L1 0 5877 4624 4 1384 306 0 0 0 chr9 104762657 104762691 -19313481 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1384 13881 146 6 10 chr9 104762691 104763704 -19312468 - L1_Mur2 LINE L1 -1254 4623 3610 4 1384 9153 71 28 2 chr9 104763720 104765152 -19311020 - MusHAL1 LINE L1 -1401 1952 490 4 1384 2826 28 3 12 chr9 104765167 104765491 -19310681 - L1Md_F2 LINE L1 0 6582 6262 4 1384 1209 96 0 0 chr9 104765491 104765657 -19310515 - MusHAL1 LINE L1 -2002 710 545 4 1384 2621 36 0 3 chr9 104765655 104765961 -19310211 - L1Md_F2 LINE L1 -318 6264 5960 4 1384 467 33 0 0 chr9 104765959 104766020 -19310152 + L1Md_F2 LINE L1 5909 5969 -613 4 1384 3483 113 8 4 chr9 104766017 104766516 -19309656 - L1VL4 LINE L1 -5596 706 206 4 1384 4003 154 28 11 chr9 104766517 104766799 -19309373 - L1_Mur2 LINE L1 -2132 3748 3476 4 1384 194 0 39 0 chr9 104766799 104766825 -19309347 + (CCCCCA)n Simple_repeat Simple_repeat 1 27 0 4 1384 4003 146 26 6 chr9 104766825 104767316 -19308856 - L1_Mur2 LINE L1 -2402 3475 2969 4 1384 427 289 117 92 chr9 104767459 104767741 -19308431 + B4A SINE B4 4 292 0 4 1384 240 167 0 0 chr9 104767777 104767825 -19308347 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1384 317 354 0 0 chr9 104767841 104767971 -19308201 + (CA)n Simple_repeat Simple_repeat 1 130 0 4 1384 205 224 66 123 chr9 104768214 104768336 -19307836 + MIRc SINE MIR 30 144 -124 4 1384 180 0 0 0 chr9 104769020 104769040 -19307132 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 1384 432 274 0 10 chr9 104769118 104769221 -19306951 - MER5B DNA MER1_type -3 175 74 4 1384 348 262 127 7 chr9 104769389 104769531 -19306641 - MER3 DNA MER1_type -38 171 13 4 1384 533 306 0 0 chr9 104770738 104770862 -19305310 - RSINE1 SINE B4 -15 150 27 4 1384 340 291 13 0 chr9 104770896 104770975 -19305197 + MIR SINE MIR 7 86 -176 4 1384 510 271 0 32 chr9 104771214 104771340 -19304832 + RSINE1 SINE B4 12 133 -32 4 1384 510 83 0 0 chr9 104771341 104771413 -19304759 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1384 452 86 14 0 chr9 104772840 104772910 -19303262 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1384 598 276 13 33 chr9 104773765 104773915 -19302257 + B1F SINE Alu 3 149 0 4 1384 401 284 232 20 chr9 104773919 104774070 -19302102 + B3A SINE B2 1 183 -15 4 1384 23 54 0 0 chr9 104774086 104774123 -19302049 + AT_rich Low_complexity Low_complexity 1 37 0 4 1384 400 218 23 0 chr9 104774664 104774751 -19301421 - MER117 DNA MER1_type -28 169 81 4 1384 1074 128 209 0 chr9 104775699 104775886 -19300286 + URR1A DNA MER1_type 1 226 0 4 1384 228 294 11 23 chr9 104776825 104776912 -19299260 + Arthur1B DNA Tip100 1140 1225 0 4 1384 279 173 0 0 chr9 104777392 104777444 -19298728 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1384 21 0 0 0 chr9 104777730 104777751 -19298421 + AT_rich Low_complexity Low_complexity 1 21 0 4 1384 591 359 46 55 chr9 104778214 104778559 -19297613 - LTR16C LTR ERVL -81 408 67 4 1384 288 130 0 0 chr9 104779135 104779181 -19296991 + (ATG)n Simple_repeat Simple_repeat 2 47 0 4 1384 238 407 38 32 chr9 104779260 104779604 -19296568 - L2a LINE L2 0 3426 3036 5 1384 3280 44 23 0 chr9 104779655 104780042 -19296130 + MTA_Mm LTR MaLR 1 396 0 5 1384 183 205 0 0 chr9 104780755 104780794 -19295378 + A-rich Low_complexity Low_complexity 1 39 0 5 1384 27 62 0 0 chr9 104780802 104780850 -19295322 + AT_rich Low_complexity Low_complexity 1 48 0 5 1384 746 249 126 52 chr9 104781347 104781618 -19294554 + B4 SINE B4 2 292 0 5 1384 281 247 19 85 chr9 104782047 104782153 -19294019 + MT2B LTR ERVL 156 254 -347 5 1384 619 203 30 8 chr9 104782067 104782201 -19293971 + B1_Mur4 SINE Alu 14 150 0 5 1384 242 56 0 27 chr9 104782224 104782261 -19293911 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1384 664 250 89 22 chr9 104783370 104783550 -19292622 + B3A SINE B2 1 192 -3 5 1384 863 240 0 0 chr9 104783906 104784077 -19292095 - B3 SINE B2 -45 171 1 5 1384 223 338 50 35 chr9 104784084 104784225 -19291947 - MER5A DNA MER1_type -40 149 7 5 1384 489 76 0 0 chr9 104784392 104784458 -19291714 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1384 839 265 48 29 chr9 104784490 104784696 -19291476 - B4 SINE B4 -2 290 81 5 1384 455 370 15 26 chr9 104784797 104784971 -19291201 - B4A SINE B4 -14 278 105 5 1384 1850 241 108 101 chr9 104784971 104785825 -19290347 - RMER13A LTR ERVK 0 860 1 5 1384 455 370 15 26 chr9 104785825 104785922 -19290250 - B4A SINE B4 -188 104 11 5 1384 600 263 88 10 chr9 104788079 104788271 -19287901 + B4A SINE B4 30 236 -56 5 1384 750 222 75 15 chr9 104788374 104788575 -19287597 - ORR1C2 LTR MaLR 0 384 172 5 1384 215 203 14 0 chr9 104788611 104788685 -19287487 + (CAGA)n Simple_repeat Simple_repeat 4 78 0 5 1384 390 149 0 0 chr9 104788706 104788793 -19287379 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 1384 252 234 16 0 chr9 104788860 104788924 -19287248 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1384 423 0 0 0 chr9 104789078 104789125 -19287047 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1384 508 244 41 30 chr9 104790245 104790414 -19285758 + HAL1-2a_MD LINE L1 2345 2515 -509 5 1384 180 0 0 0 chr9 104790467 104790487 -19285685 + (CAG)n Simple_repeat Simple_repeat 1 20 0 5 1384 270 0 0 0 chr9 104790521 104790551 -19285621 + (CAT)n Simple_repeat Simple_repeat 1 30 0 5 1384 381 75 0 0 chr9 104790551 104790604 -19285568 + (CAA)n Simple_repeat Simple_repeat 1 53 0 5 1384 519 82 0 0 chr9 104790796 104790869 -19285303 + (GGA)n Simple_repeat Simple_repeat 2 74 0 5 1384 834 185 148 22 chr9 104791128 104791310 -19284862 - B3 SINE B2 -11 205 1 5 1384 217 332 80 17 chr9 104792068 104792307 -19283865 + L2 LINE L2 2383 2636 -783 5 1384 209 286 60 0 chr9 104792501 104792585 -19283587 - MIRb SINE MIR -96 172 84 5 1384 215 359 39 0 chr9 104792652 104792730 -19283442 + MIR SINE MIR 22 102 -160 5 1384 250 295 107 27 chr9 104792778 104792928 -19283244 + MLT1C LTR MaLR 55 216 -289 5 1384 427 274 51 40 chr9 104792972 104793147 -19283025 + MLT1C LTR MaLR 286 462 -5 5 1384 1182 178 31 14 chr9 104793885 104794107 -19282065 - URR1A DNA MER1_type 0 226 1 5 1384 456 261 22 36 chr9 104794220 104794359 -19281813 + B1F1 SINE Alu 13 149 0 5 1384 181 0 69 0 chr9 104794576 104794605 -19281567 + (TTG)n Simple_repeat Simple_repeat 3 33 0 5 1384 3129 138 30 26 chr9 104794606 104795178 -19280994 + RMER4B LTR ERVK 12 585 0 5 1384 262 340 39 0 chr9 104795229 104795332 -19280840 - LTR16C LTR ERVL -249 240 134 5 1384 325 258 20 20 chr9 104795381 104795480 -19280692 - RMER10B LTR ERVL -31 367 269 5 1384 345 75 0 0 chr9 104796052 104796105 -19280067 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 5 1384 1026 107 0 0 chr9 104796114 104796291 -19279881 + (TC)n Simple_repeat Simple_repeat 2 178 0 5 1384 198 0 0 0 chr9 104796291 104796312 -19279860 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1384 762 281 68 8 chr9 104796321 104796572 -19279600 - B4A SINE B4 -25 267 2 5 1384 512 30 0 15 chr9 104797075 104797142 -19279030 + (TTA)n Simple_repeat Simple_repeat 1 66 0 5 1384 1738 92 0 0 chr9 104797143 104797370 -19278802 - L1_Mus1 LINE L1 -11 6556 6330 5 1384 232 48 23 23 chr9 104798174 104798217 -19277955 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 5 1384 499 279 25 91 chr9 104798293 104798612 -19277560 + Lx9 LINE L1 7339 7636 -8 5 1384 931 162 14 0 chr9 104798615 104798763 -19277409 + B1_Mur4 SINE Alu 1 150 0 5 1384 184 320 0 0 chr9 104798824 104798874 -19277298 + L2a LINE L2 3363 3412 -14 5 1384 620 285 43 60 chr9 104799871 104800078 -19276094 + B4 SINE B4 1 220 -72 5 1384 2028 61 0 0 chr9 104800494 104800741 -19275431 - L1_Mus1 LINE L1 -3 6564 6318 5 1384 1122 72 0 0 chr9 104800741 104800879 -19275293 + L1_Mus1 LINE L1 6177 6314 -253 5 1384 405 0 0 0 chr9 104801878 104801923 -19274249 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1384 363 125 0 0 chr9 104802966 104803038 -19273134 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1384 855 204 0 0 chr9 104803356 104803503 -19272669 - B1_Mur1 SINE Alu -1 148 2 5 1384 344 270 8 102 chr9 104803397 104803525 -19272647 - MT2B LTR ERVL -341 260 145 5 1384 445 348 27 11 chr9 104804566 104804752 -19271420 - LTR16B2 LTR ERVL -273 189 1 5 1384 459 0 0 0 chr9 104804814 104804865 -19271307 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1384 315 0 0 0 chr9 104804867 104804902 -19271270 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1384 587 246 0 8 chr9 104804904 104805153 -19271019 + (TG)n Simple_repeat Simple_repeat 1 246 0 5 1384 518 239 0 11 chr9 104805182 104805364 -19270808 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1384 504 0 0 0 chr9 104805726 104805782 -19270390 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1384 601 310 0 12 chr9 104805794 104805964 -19270208 - B4 SINE B4 -44 248 81 5 1384 670 284 100 56 chr9 104805974 104806295 -19269877 - Lx8 LINE L1 -2 7471 7137 5 1384 828 177 14 7 chr9 104806300 104806448 -19269724 - B1_Mur3 SINE Alu 0 149 1 5 1384 947 286 28 4 chr9 104806484 104806733 -19269439 - Lx5 LINE L1 -19 7031 6777 5 1384 1343 274 27 14 chr9 104806712 104807079 -19269093 - Lx8 LINE L1 -309 7164 6793 5 1384 1632 263 55 11 chr9 104807436 104807875 -19268297 - Lx8 LINE L1 -642 6831 6374 5 1384 333 0 0 0 chr9 104807937 104807974 -19268198 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1384 236 278 147 23 chr9 104808641 104808770 -19267402 + Charlie1b DNA MER1_type 72 216 -307 5 1384 40723 24 1 6 chr9 104808858 104815015 -19261157 - L1Md_T LINE L1 0 6582 465 5 1384 266 284 71 27 chr9 104815111 104815223 -19260949 + Charlie1b DNA MER1_type 407 523 0 5 1384 798 282 28 0 chr9 104815791 104816007 -19260165 - MER58A DNA MER1_type -1 223 2 5 1384 537 329 8 30 chr9 104816542 104816933 -19259239 - Lx8 LINE L1 -1633 6011 5592 5 1384 387 253 133 11 chr9 104816936 104817124 -19259048 - L1MA5 LINE L1 -1 6299 6088 5 1384 1448 255 46 31 chr9 104817801 104818282 -19257890 - RMER5 LTR ERV1 -34 500 13 5 1384 432 0 0 0 chr9 104818579 104818627 -19257545 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1384 498 17 0 0 chr9 104818627 104818685 -19257487 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1384 407 279 27 0 chr9 104818686 104818797 -19257375 - RSINE1 SINE B4 -48 117 4 5 1384 2371 215 25 32 chr9 104819116 104819669 -19256503 - RMER15 LTR ERVL 0 575 27 5 1384 1267 234 209 64 chr9 104819913 104820011 -19256161 - Lx8 LINE L1 -1 7472 7348 5 1384 960 9 0 0 chr9 104820011 104820120 -19256052 + (TC)n Simple_repeat Simple_repeat 1 109 0 5 1384 1267 234 209 64 chr9 104820120 104820264 -19255908 - Lx8 LINE L1 -126 7347 7172 5 1384 621 0 0 0 chr9 104820264 104820333 -19255839 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 5 1384 228 67 0 0 chr9 104820335 104820365 -19255807 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 5 1384 1267 234 209 64 chr9 104820365 104820697 -19255475 - Lx8 LINE L1 -302 7171 6811 5 1384 21 36 0 0 chr9 104821453 104821481 -19254691 + AT_rich Low_complexity Low_complexity 1 28 0 5 1384 3448 114 54 2 chr9 104821740 104822256 -19253916 - Lx4A LINE L1 -1 7057 6515 5 1384 417 171 98 0 chr9 104822264 104822346 -19253826 - L1_Mur2 LINE L1 -6602 110 21 5 1384 829 233 59 71 chr9 104822400 104822723 -19253449 - Lx7 LINE L1 -329 7367 7049 5 1384 492 59 0 0 chr9 104823332 104823400 -19252772 + (TTCA)n Simple_repeat Simple_repeat 4 71 0 5 1384 366 289 155 0 chr9 104824317 104824459 -19251713 + L1MEg LINE L1 558 721 -5363 5 1384 1150 252 46 6 chr9 104824975 104825298 -19250874 - Lx9 LINE L1 -5 7639 7304 5 1384 814 110 0 14 chr9 104825318 104825456 -19250716 - L1Md_F2 LINE L1 0 6582 6447 5 1384 433 308 25 0 chr9 104825872 104825992 -19250180 - ORR1E LTR MaLR -218 141 19 5 1384 574 259 77 72 chr9 104826072 104826280 -19249892 + MTEa LTR MaLR 1 209 -170 5 1384 280 133 33 0 chr9 104826280 104826340 -19249832 + CT-rich Low_complexity Low_complexity 2 63 0 5 1384 24 32 0 0 chr9 104826486 104826517 -19249655 + AT_rich Low_complexity Low_complexity 1 31 0 5 1384 259 327 45 0 chr9 104826739 104826849 -19249323 - MER5A DNA MER1_type -73 116 2 5 1384 306 98 0 0 chr9 104827174 104827225 -19248947 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1384 191 114 0 28 chr9 104827251 104827287 -19248885 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1384 339 25 0 0 chr9 104827352 104827392 -19248780 + (CATA)n Simple_repeat Simple_repeat 1 40 0 5 1384 578 307 64 64 chr9 104827392 104827666 -19248506 - Lx8 LINE L1 -25 7448 7174 5 1384 405 58 0 0 chr9 104828504 104828556 -19247616 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1384 183 80 0 0 chr9 104828720 104828745 -19247427 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1384 248 312 124 23 chr9 104828806 104828983 -19247189 - MLT1H1 LTR MaLR -360 195 1 5 1384 503 155 10 0 chr9 104830115 104830218 -19245954 + CT-rich Low_complexity Low_complexity 1 104 0 5 1384 558 0 0 0 chr9 104830346 104830408 -19245764 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1384 413 336 7 46 chr9 104830670 104830823 -19245349 - MER5A DNA MER1_type -35 154 8 5 1384 198 71 0 0 chr9 104832001 104832029 -19244143 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 5 1384 698 62 0 10 chr9 104832558 104832655 -19243517 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1384 509 254 139 52 chr9 104832692 104832944 -19243228 - B4A SINE B4 -22 270 1 6 1384 1028 261 28 21 chr9 104835758 104836048 -19240124 + B4A SINE B4 1 292 0 6 1384 568 202 101 0 chr9 104836188 104836307 -19239865 + B1_Mur1 SINE Alu 3 133 -16 6 1384 291 313 0 29 chr9 104836405 104836507 -19239665 - MLT1J1 LTR MaLR -318 126 28 6 1384 1909 163 26 6 chr9 104836530 104836869 -19239303 - ORR1B1 LTR MaLR -8 386 41 6 1384 1221 80 43 0 chr9 104836876 104837064 -19239108 - ORR1B1-int LTR MaLR 0 1963 1768 6 1384 276 154 0 0 chr9 104837711 104837763 -19238409 + GA-rich Low_complexity Low_complexity 1 52 0 6 1384 412 345 11 0 chr9 104837834 104838008 -19238164 + L1MB3 LINE L1 6006 6181 -2 6 1384 406 385 60 42 chr9 104838779 104839132 -19237040 + ORR1E LTR MaLR 1 359 0 6 1384 21 57 0 0 chr9 104840264 104840299 -19235873 + AT_rich Low_complexity Low_complexity 1 35 0 6 1384 2661 319 57 22 chr9 104840985 104842045 -19234127 - Lx8 LINE L1 -6 7467 6371 6 1384 450 0 0 0 chr9 104842094 104842144 -19234028 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1384 233 222 18 18 chr9 104843079 104843134 -19233038 + MER5A1 DNA MER1_type 29 83 -83 6 1384 530 220 156 0 chr9 104843085 104843226 -19232946 - MER5A DNA MER1_type -23 166 4 6 1384 236 326 66 55 chr9 104843830 104843921 -19232251 + B1F2 SINE Alu 2 93 -56 6 1384 300 266 0 21 chr9 104844052 104844148 -19232024 + MER5B DNA MER1_type 10 103 -75 6 1384 210 264 0 0 chr9 104844240 104844293 -19231879 - BC1_Mm scRNA scRNA -60 92 40 6 1384 218 222 0 0 chr9 104845270 104845315 -19230857 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1384 428 265 71 18 chr9 104845797 104845966 -19230206 + B3A SINE B2 5 182 -16 6 1384 201 344 102 23 chr9 104846396 104846524 -19229648 - MIRb SINE MIR -126 142 5 6 1384 180 125 0 0 chr9 104847048 104847080 -19229092 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 6 1384 415 309 223 71 chr9 104847215 104847708 -19228464 + MLT1E1 LTR MaLR 17 584 -43 6 1384 237 338 0 0 chr9 104847827 104847898 -19228274 - ID4 SINE ID -12 71 1 6 1384 262 43 87 0 chr9 104847898 104847944 -19228228 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 6 1384 421 299 20 14 chr9 104847947 104848018 -19228154 - B1_Mus2 SINE Alu 0 147 76 6 1384 973 58 174 0 chr9 104848018 104848097 -19228075 - L1_Mus3 LINE L1 -1 6637 6556 6 1384 480 35 0 0 chr9 104848097 104848155 -19228017 + (CCCCCT)n Simple_repeat Simple_repeat 2 59 0 6 1384 973 58 174 0 chr9 104848155 104848230 -19227942 - L1_Mus3 LINE L1 -83 6555 6457 6 1384 421 299 20 14 chr9 104848230 104848304 -19227868 - B1_Mus2 SINE Alu -72 75 2 6 1384 24 0 0 0 chr9 104851163 104851187 -19224985 + AT_rich Low_complexity Low_complexity 1 24 0 6 1384 205 379 0 37 chr9 104852697 104852804 -19223368 + MER5A1 DNA MER1_type 9 106 -60 6 1384 553 238 160 0 chr9 104853495 104853676 -19222496 + B4A SINE B4 2 211 -81 6 1384 252 0 0 0 chr9 104853699 104853727 -19222445 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1384 246 105 0 0 chr9 104854204 104854242 -19221930 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1384 1170 254 7 24 chr9 104854285 104854576 -19221596 - B4 SINE B4 -4 288 3 6 1384 646 342 21 7 chr9 104854793 104855079 -19221093 - ALINE LINE RTE -169 448 159 6 1384 265 207 21 84 chr9 104855171 104855266 -19220906 - L2 LINE L2 -1357 2062 1974 6 1384 240 278 175 31 chr9 104855271 104855407 -19220765 + MIRb SINE MIR 69 229 -39 6 1384 2987 70 18 5 chr9 104855407 104855798 -19220374 + MTA_Mm LTR MaLR 1 396 0 6 1384 240 278 175 31 chr9 104855798 104855821 -19220351 + MIRb SINE MIR 230 251 -17 6 21 1133 245 93 187 chr9 104856868 104857660 -19218512 - Lx8 LINE L1 0 7473 6756 6 1385 1369 219 160 37 chr9 104858043 104858417 -19217755 - MTC LTR MaLR -1 420 1 6 1385 765 41 0 0 chr9 104858768 104858865 -19217307 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 6 1385 695 329 132 8 chr9 104858916 104859167 -19217005 - B4A SINE B4 -8 284 3 6 1385 551 268 137 0 chr9 104859524 104859707 -19216465 + B4A SINE B4 2 209 -83 6 1385 882 0 0 0 chr9 104859707 104859805 -19216367 + (GAAA)n Simple_repeat Simple_repeat 1 98 0 6 1385 1216 57 8 0 chr9 104859809 104860056 -19216116 + (GGAA)n Simple_repeat Simple_repeat 1 249 0 6 1385 267 54 0 0 chr9 104860100 104860137 -19216035 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 6 1385 309 252 58 0 chr9 104860789 104860892 -19215280 - MER5A1 DNA MER1_type 0 166 58 6 1385 437 276 52 13 chr9 104861317 104861471 -19214701 - B4A SINE B4 -130 162 3 6 1385 242 0 61 0 chr9 104861580 104861613 -19214559 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1385 544 260 58 0 chr9 104863052 104863225 -19212947 - MLT1D LTR MaLR -2 503 321 6 1385 500 217 186 35 chr9 104863292 104863464 -19212708 - MLT1D LTR MaLR -290 215 18 6 1385 306 0 0 0 chr9 104864509 104864543 -19211629 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 6 1385 925 68 104 15 chr9 104864569 104864703 -19211469 - B1_Mus1 SINE Alu -2 146 1 6 1385 191 188 21 0 chr9 104864728 104864776 -19211396 + CT-rich Low_complexity Low_complexity 2 50 0 6 1385 315 0 0 0 chr9 104865419 104865454 -19210718 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1385 27 0 0 0 chr9 104865464 104865491 -19210681 + AT_rich Low_complexity Low_complexity 1 27 0 6 1385 5082 104 82 73 chr9 104865508 104866382 -19209790 - L1_Mus2 LINE L1 -1 6565 5684 6 1385 1174 135 75 32 chr9 104866560 104866812 -19209360 + Lx9 LINE L1 7373 7635 -9 6 1385 7261 169 37 35 chr9 104867169 104869065 -19207107 - Lx2B LINE L1 -10 6990 5075 6 1385 601 213 23 23 chr9 104869313 104869443 -19206729 + B1_Mur1 SINE Alu 14 143 -6 6 1385 549 0 0 0 chr9 104869869 104869930 -19206242 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1385 280 196 107 107 chr9 104870125 104870228 -19205944 + MTEb LTR MaLR 51 153 -226 6 1385 198 331 52 66 chr9 104871093 104871229 -19204943 + MIR3 SINE MIR 11 144 -64 6 1385 260 312 12 0 chr9 104871293 104871373 -19204799 - MER5A DNA MER1_type -38 151 71 6 1385 217 299 15 15 chr9 104872279 104872347 -19203825 - B3A SINE B2 -125 73 6 6 1385 1027 277 43 14 chr9 104873763 104874045 -19202127 - B4 SINE B4 -2 290 1 6 1385 957 109 0 93 chr9 104874920 104875082 -19201090 + B1_Mus2 SINE Alu 1 147 0 6 1385 585 0 0 0 chr9 104875096 104875161 -19201011 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 6 1385 326 327 10 0 chr9 104876321 104876425 -19199747 - ID_B1 SINE B4 -1 223 119 6 1385 1707 281 8 2 chr9 104876483 104876883 -19199289 - Lx8 LINE L1 -800 6673 6272 6 1385 226 68 44 22 chr9 104876888 104876933 -19199239 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1385 188 357 77 31 chr9 104877167 104877297 -19198875 - L2b LINE L2 -34 3341 3206 6 1385 226 317 0 0 chr9 104877578 104877638 -19198534 + B4A SINE B4 86 145 -147 6 1385 466 255 0 0 chr9 104877587 104877685 -19198487 + PB1D7 SINE Alu 10 107 -13 6 1385 23 0 0 0 chr9 104879174 104879197 -19196975 + AT_rich Low_complexity Low_complexity 1 23 0 6 1385 1236 54 0 0 chr9 104879199 104879346 -19196826 + B1_Mus2 SINE Alu 1 147 0 6 1385 444 37 0 0 chr9 104879427 104879481 -19196691 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1385 612 0 0 0 chr9 104879563 104879631 -19196541 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1385 645 113 0 0 chr9 104880299 104880396 -19195776 + BC1_Mm scRNA scRNA 1 97 -55 6 1385 339 297 30 0 chr9 104880691 104880792 -19195380 - PB1D10 SINE Alu -8 109 6 6 1385 467 225 52 44 chr9 104881412 104881547 -19194625 + L1M2 LINE L1 5657 5792 -499 6 1385 289 253 0 26 chr9 104882255 104882332 -19193840 - Lx6 LINE L1 -421 7039 6965 6 1385 1604 250 34 10 chr9 104882335 104882723 -19193449 + Lx6 LINE L1 7054 7450 -10 6 1385 22 35 0 0 chr9 104882793 104882822 -19193350 + AT_rich Low_complexity Low_complexity 1 29 0 6 1385 1018 305 5 92 chr9 104883120 104883535 -19192637 + Lx8 LINE L1 7093 7471 -2 6 1385 1020 264 54 14 chr9 104884878 104885231 -19190941 - L1M3 LINE L1 -837 5303 4937 6 1385 1723 169 68 3 chr9 104885312 104885620 -19190552 - RMER1B Other Other -9 1057 730 6 1385 624 198 8 0 chr9 104885609 104885730 -19190442 + RMER1B Other Other 634 755 -311 6 1385 1392 195 119 32 chr9 104885860 104886205 -19189967 + MTE2a LTR MaLR 1 375 -4 6 1385 776 187 14 0 chr9 104886616 104886755 -19189417 + B1_Mur4 SINE Alu 1 141 -9 6 1385 518 238 57 36 chr9 104886745 104886910 -19189262 - MTD LTR MaLR -82 337 153 6 1385 504 0 0 0 chr9 104886974 104887030 -19189142 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1385 576 42 0 0 chr9 104887151 104887222 -19188950 + (TA)n Simple_repeat Simple_repeat 2 72 0 6 1385 371 371 57 21 chr9 104887317 104887598 -19188574 - MLT1I LTR MaLR -73 338 48 6 1385 28 48 0 0 chr9 104888005 104888047 -19188125 + AT_rich Low_complexity Low_complexity 1 42 0 6 1385 1050 276 22 22 chr9 104888100 104888374 -19187798 + B4A SINE B4 5 278 -14 6 1385 936 126 0 0 chr9 104888386 104888666 -19187506 + (CA)n Simple_repeat Simple_repeat 1 280 0 6 1385 186 71 0 0 chr9 104889053 104889081 -19187091 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1385 1143 250 111 29 chr9 104889318 104889660 -19186512 + ORR1D2 LTR MaLR 1 370 0 6 1385 201 94 0 0 chr9 104889955 104889987 -19186185 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1385 1168 68 14 0 chr9 104889994 104890140 -19186032 - B1_Mus1 SINE Alu 0 148 1 6 1385 857 10 0 10 chr9 104890538 104890641 -19185531 + (GAGAA)n Simple_repeat Simple_repeat 2 103 0 6 1385 345 24 0 0 chr9 104890641 104890682 -19185490 + (GGGGA)n Simple_repeat Simple_repeat 1 42 0 6 1385 396 0 0 0 chr9 104891497 104891541 -19184631 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1385 518 274 14 62 chr9 104892930 104893074 -19183098 + RSINE1 SINE B4 29 165 0 7 1385 192 282 0 0 chr9 104893079 104893157 -19183015 + (CATA)n Simple_repeat Simple_repeat 4 81 0 7 1385 322 311 56 17 chr9 104893232 104893412 -19182760 - L2b LINE L2 -233 3142 2956 7 1385 233 196 0 111 chr9 104893502 104893565 -19182607 + Charlie5 DNA MER1_type 1 56 -2568 7 1385 930 281 40 11 chr9 104893720 104893994 -19182178 + B4 SINE B4 3 284 -8 7 1385 250 254 17 0 chr9 104894753 104894812 -19181360 - MLT1H2 LTR MaLR -338 151 92 7 1385 181 317 0 0 chr9 104895184 104895244 -19180928 - MIR SINE MIR -123 139 80 7 1385 483 18 0 0 chr9 104896678 104896734 -19179438 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1385 1965 149 8 31 chr9 104897155 104897515 -19178657 + ORR1B2 LTR MaLR 1 352 -15 7 1385 231 237 191 14 chr9 104898024 104898165 -19178007 - Lx8 LINE L1 -6 7467 7302 7 1385 277 320 56 39 chr9 104900864 104901043 -19175129 + L1M5 LINE L1 5688 5869 -255 7 1385 327 323 103 101 chr9 104901145 104901541 -19174631 + MLT1A1 LTR MaLR 4 400 -8 7 1385 315 299 50 20 chr9 104902795 104902894 -19173278 - PB1D10 SINE Alu -10 107 6 7 1385 522 110 45 10 chr9 104903015 104903121 -19173051 - ORR1A1 LTR MaLR -13 361 244 7 1385 525 217 0 8 chr9 104903107 104903228 -19172944 - ORR1A1 LTR MaLR -221 125 6 7 1385 501 274 86 33 chr9 104904180 104904366 -19171806 - L1PB4 LINE L1 -235 5921 5713 7 1385 744 190 0 0 chr9 104905527 104905648 -19170524 + B3 SINE B2 1 121 -95 7 1385 1561 291 110 42 chr9 104905658 104906695 -19169477 + L1_Mur3 LINE L1 3452 4558 -1322 7 1385 30 59 0 0 chr9 104906711 104906762 -19169410 + AT_rich Low_complexity Low_complexity 1 51 0 7 1385 408 238 14 106 chr9 104907052 104907193 -19168979 + B1_Mm SINE Alu 4 131 -16 7 1385 1602 300 36 27 chr9 104907250 104907996 -19168176 + L1MA5 LINE L1 4612 5364 -779 7 1385 710 312 52 9 chr9 104908032 104908256 -19167916 + B4A SINE B4 48 281 -11 7 1385 429 20 0 0 chr9 104908256 104908306 -19167866 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1385 1461 277 71 21 chr9 104908317 104908884 -19167288 + L1MA5 LINE L1 5354 5939 -361 7 1385 585 0 0 0 chr9 104908884 104908949 -19167223 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1385 350 315 142 19 chr9 104908949 104909026 -19167146 + L1MA5 LINE L1 5912 6012 -1448 7 1385 843 122 0 0 chr9 104910196 104910327 -19165845 + (TC)n Simple_repeat Simple_repeat 2 132 0 7 1385 495 0 0 0 chr9 104910780 104910835 -19165337 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1385 1417 192 222 93 chr9 104911466 104911892 -19164280 + MT2A LTR ERVL 1 487 -46 7 1385 641 45 11 0 chr9 104911892 104911981 -19164191 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 7 1385 1417 192 222 93 chr9 104911981 104912026 -19164146 + MT2A LTR ERVL 488 532 -1 7 1385 316 103 35 0 chr9 104912469 104912527 -19163645 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1385 363 96 0 0 chr9 104913653 104913705 -19162467 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1385 381 244 56 87 chr9 104913737 104913763 -19162409 - RMER5 LTR ERV1 0 534 519 7 1385 1456 75 5 0 chr9 104913763 104913950 -19162222 - B2_Mm1a SINE B2 -5 188 1 7 1385 381 210 302 59 chr9 104913950 104914110 -19162062 - RMER5 LTR ERV1 -16 518 310 7 1385 374 299 0 10 chr9 104914250 104914348 -19161824 + PB1D10 SINE Alu 10 106 -11 7 1385 329 325 25 0 chr9 104914369 104914449 -19161723 + ID4 SINE ID 2 83 0 7 1385 220 279 15 0 chr9 104914388 104914456 -19161716 + B4 SINE B4 24 92 -200 7 1385 317 288 14 0 chr9 104914710 104914783 -19161389 - MER5B DNA MER1_type -4 174 101 7 1385 186 133 0 0 chr9 104914820 104914850 -19161322 + (CTG)n Simple_repeat Simple_repeat 1 30 0 7 1385 296 280 55 18 chr9 104915017 104915126 -19161046 + PB1D10 SINE Alu 4 116 -1 7 1385 894 114 0 0 chr9 104915274 104915530 -19160642 + (GA)n Simple_repeat Simple_repeat 1 256 0 7 1385 728 220 102 27 chr9 104916338 104916525 -19159647 + B3A SINE B2 8 208 -8 7 1385 551 266 0 30 chr9 104916564 104916696 -19159476 - RSINE1 SINE B4 -36 129 2 7 1385 343 299 0 0 chr9 104916752 104916829 -19159343 - ID4_ SINE ID -1 82 6 7 1385 189 0 0 0 chr9 104918085 104918106 -19158066 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1385 4835 53 0 21 chr9 104918226 104918847 -19157325 + L1Md_F2 LINE L1 5969 6576 -6 7 1385 218 196 0 0 chr9 104919426 104919477 -19156695 + A-rich Low_complexity Low_complexity 2 52 0 7 1385 273 322 11 11 chr9 104919929 104920023 -19156149 + B1F SINE Alu 49 142 -7 7 1385 619 46 23 0 chr9 104920307 104920394 -19155778 + (GA)n Simple_repeat Simple_repeat 2 90 0 7 1385 222 37 0 0 chr9 104920423 104920450 -19155722 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1385 247 49 49 0 chr9 104921792 104921833 -19154339 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 7 1385 24 0 0 0 chr9 104922414 104922438 -19153734 + AT_rich Low_complexity Low_complexity 1 24 0 7 1385 1034 123 0 6 chr9 104922471 104922643 -19153529 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 7 1385 21 0 0 0 chr9 104924586 104924607 -19151565 + AT_rich Low_complexity Low_complexity 1 21 0 7 1385 985 340 86 15 chr9 104925125 104925614 -19150558 - MLT1F LTR MaLR -4 650 15 7 1385 319 336 54 22 chr9 104925632 104925854 -19150318 + L2 LINE L2 2594 2822 -597 7 1385 660 342 5 0 chr9 104925856 104926052 -19150120 + ID_B1 SINE B4 6 202 -22 7 1385 279 282 56 0 chr9 104926834 104926905 -19149267 - ID2 SINE ID -2 81 7 7 1385 610 278 50 43 chr9 104927281 104927657 -19148515 - Charlie5 DNA MER1_type -8 2616 2238 7 1385 293 308 29 0 chr9 104927668 104927772 -19148400 - MER3 DNA MER1_type -71 138 32 7 1385 396 0 0 0 chr9 104927957 104928001 -19148171 + (TTA)n Simple_repeat Simple_repeat 3 46 0 7 1385 256 324 27 9 chr9 104928726 104928838 -19147334 + L1MC5 LINE L1 7744 7857 -104 7 1385 214 370 22 0 chr9 104929523 104929615 -19146557 + MER91A DNA Tip100 1 94 -102 7 1385 253 155 0 33 chr9 104931639 104931699 -19144473 + (TATG)n Simple_repeat Simple_repeat 3 60 0 7 1385 735 287 48 72 chr9 104931704 104931997 -19144175 - B4A SINE B4 -5 287 2 7 1385 296 245 148 30 chr9 104931998 104932099 -19144073 + RMER30 DNA MER1_type 7 119 -83 7 1385 191 289 0 0 chr9 104932637 104932682 -19143490 + MIR SINE MIR 79 123 -139 7 1385 261 213 0 0 chr9 104932893 104932954 -19143218 - MER3 DNA MER1_type -4 205 145 7 1385 384 225 25 0 chr9 104932954 104933034 -19143138 + B4A SINE B4 1 82 -210 7 1385 838 308 75 42 chr9 104933070 104933470 -19142702 - Lx9 LINE L1 -272 7372 6960 7 1385 263 104 0 20 chr9 104934355 104934404 -19141768 + (CCA)n Simple_repeat Simple_repeat 2 49 0 7 1385 22 0 0 0 chr9 104935341 104935363 -19140809 + AT_rich Low_complexity Low_complexity 1 22 0 7 1385 25 0 0 0 chr9 104935657 104935682 -19140490 + AT_rich Low_complexity Low_complexity 1 25 0 7 1385 271 258 149 11 chr9 104935832 104935926 -19140246 - MER5A1 DNA MER1_type -25 141 35 7 1385 225 300 98 22 chr9 104937274 104937366 -19138806 - LTR89 LTR ERVL? -8 871 773 7 1385 811 311 51 30 chr9 104937461 104937581 -19138591 - MLT1A0 LTR MaLR -14 351 225 7 1385 4320 62 0 13 chr9 104937581 104938138 -19138034 - L1Md_F2 LINE L1 0 6582 6033 7 1385 811 311 51 30 chr9 104938138 104938352 -19137820 - MLT1A0 LTR MaLR -141 224 11 7 1385 8294 45 2 5 chr9 104938394 104939613 -19136559 - L1Md_F2 LINE L1 0 6582 5368 7 1385 307 333 37 87 chr9 104940900 104941061 -19135111 + B4A SINE B4 20 172 -120 7 1385 487 204 43 62 chr9 104941957 104942166 -19134006 - RMER17C LTR ERVK -135 275 71 7 1385 540 309 51 58 chr9 104942192 104942484 -19133688 + B4A SINE B4 1 290 -2 7 1385 341 117 17 0 chr9 104942502 104942562 -19133610 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1385 28 0 0 0 chr9 104942577 104942605 -19133567 + AT_rich Low_complexity Low_complexity 1 28 0 7 1385 291 28 0 0 chr9 104942704 104942740 -19133432 + (TTG)n Simple_repeat Simple_repeat 2 37 0 7 1385 261 193 125 0 chr9 104942740 104942828 -19133344 - L1MA6 LINE L1 0 6300 6202 7 1385 352 313 29 58 chr9 104942829 104943070 -19133102 - RMER2 LTR ERV1 0 567 334 7 1385 638 267 45 11 chr9 104943350 104943564 -19132608 + L1MA6 LINE L1 5795 6008 -295 7 1385 1643 206 26 17 chr9 104943632 104943983 -19132189 - MTD LTR MaLR -11 408 55 7 1385 1267 289 61 56 chr9 104944088 104944663 -19131509 - Charlie1a DNA MER1_type -573 882 305 7 1385 1660 189 30 12 chr9 104944663 104944996 -19131176 - RMER15 LTR ERVL 0 575 237 7 1385 2224 231 32 34 chr9 104945025 104945620 -19130552 - RLTR18 LTR ERVK 0 616 23 7 1385 4252 93 2 15 chr9 104946070 104946662 -19129510 - MT2B2 LTR ERVL 0 584 1 7 1385 473 165 32 21 chr9 104946753 104946846 -19129326 - B3 SINE B2 -121 95 2 7 1385 430 252 85 49 chr9 104947460 104947640 -19128532 - B3A SINE B2 -25 191 1 7 1385 936 246 24 0 chr9 104948830 104949037 -19127135 + B3 SINE B2 5 216 0 7 1385 1025 298 50 29 chr9 104949054 104949437 -19126735 - Lx9 LINE L1 -804 6840 6450 7 1385 449 348 20 32 chr9 104949470 104949722 -19126450 + Lx9 LINE L1 7238 7486 -158 7 1385 303 291 81 57 chr9 104951442 104951566 -19124606 + MLT1G1 LTR MaLR 161 287 -292 7 1385 232 224 31 8 chr9 104952399 104952533 -19123639 + CT-rich Low_complexity Low_complexity 1 137 0 7 1385 269 328 148 0 chr9 104953769 104953891 -19122281 + MIR SINE MIR 61 200 -62 7 1385 299 342 93 48 chr9 104954017 104954287 -19121885 + MER90 LTR ERV1 289 570 -5 7 1385 942 113 0 0 chr9 104954604 104954746 -19121426 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 7 1385 540 0 0 0 chr9 104954757 104954817 -19121355 + (TC)n Simple_repeat Simple_repeat 2 61 0 7 1385 218 277 75 47 chr9 104956169 104956275 -19119897 - MIRc SINE MIR -124 144 36 8 1385 243 315 102 0 chr9 104957412 104957520 -19118652 - PB1D10 SINE Alu -1 119 1 8 1385 545 311 13 0 chr9 104957520 104957600 -19118572 - ID SINE ID -142 82 1 8 1385 22 35 0 0 chr9 104957746 104957775 -19118397 + AT_rich Low_complexity Low_complexity 1 29 0 8 1385 228 304 105 55 chr9 104958432 104958613 -19117559 + MIRb SINE MIR 41 230 -38 8 1385 194 256 128 0 chr9 104959131 104959209 -19116963 - MER5A DNA MER1_type -95 94 7 8 1385 22 0 0 0 chr9 104959253 104959275 -19116897 + AT_rich Low_complexity Low_complexity 1 22 0 8 1385 427 247 186 21 chr9 104960153 104960389 -19115783 - RMER15 LTR ERVL -2 573 299 8 1385 251 265 0 29 chr9 104960584 104960654 -19115518 - MIRb SINE MIR -15 253 186 8 1385 1087 163 59 5 chr9 104961081 104961284 -19114888 + B3 SINE B2 2 215 -1 8 1385 1211 54 0 0 chr9 104965342 104965489 -19110683 + B1_Mus2 SINE Alu 1 147 0 8 1385 285 98 0 0 chr9 104965489 104965530 -19110642 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1385 351 0 0 0 chr9 104965630 104965669 -19110503 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1385 628 222 225 11 chr9 104969456 104969634 -19106538 - B3 SINE B2 0 216 1 8 1385 778 163 0 58 chr9 104969648 104969785 -19106387 - B1_Mus1 SINE Alu -18 130 2 8 1385 1299 146 32 0 chr9 104970702 104970921 -19105251 - URR1A DNA MER1_type 0 226 1 8 1385 349 259 122 0 chr9 104971254 104971385 -19104787 + B1F1 SINE Alu 1 147 -2 8 1385 357 299 202 8 chr9 104972987 104973230 -19102942 - MLT1F2 LTR MaLR -77 483 194 8 1385 230 261 108 40 chr9 104974774 104974922 -19101250 + L1MC4 LINE L1 6130 6287 -1595 8 1385 186 43 0 0 chr9 104975365 104975388 -19100784 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 8 1385 254 346 128 16 chr9 104975388 104975646 -19100526 + L1MC4 LINE L1 6704 6990 -1052 8 1385 324 235 15 0 chr9 104975677 104975745 -19100427 + PB1D10 SINE Alu 42 110 -7 8 1385 338 0 24 0 chr9 104976235 104976277 -19099895 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1385 225 0 0 0 chr9 104977642 104977667 -19098505 + (CTCG)n Simple_repeat Simple_repeat 2 26 0 8 1385 339 210 48 48 chr9 104980254 104980359 -19095813 + PB1D10 SINE Alu 13 117 0 8 1385 221 98 19 56 chr9 104980597 104980651 -19095521 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 8 1385 220 255 43 86 chr9 104983612 104983728 -19092444 - PB1 SINE Alu -2 125 15 8 1385 765 154 78 35 chr9 104984509 104984650 -19091522 + B1_Mm SINE Alu 1 147 0 8 1385 23 33 0 0 chr9 104984716 104984746 -19091426 + AT_rich Low_complexity Low_complexity 1 30 0 8 1385 6915 141 36 64 chr9 104984749 104985532 -19090640 + Lx2B LINE L1 4627 5434 -443 8 1385 3301 107 16 6 chr9 104985532 104986022 -19090150 + L1_Mus3 LINE L1 6144 6638 0 8 1385 7721 165 27 22 chr9 104986022 104987606 -19088566 + Lx2B LINE L1 5435 6973 -27 8 173 38976 10 1 7 chr9 104987725 104992930 -19083242 + L1Md_A LINE L1 423 5586 -297 8 1386 9007 12 0 0 chr9 104992930 104993926 -19082246 + L1Md_A LINE L1 5587 6582 0 8 1386 226 185 37 0 chr9 104994097 104994151 -19082021 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 8 1386 264 301 26 77 chr9 104994185 104994340 -19081832 + L1MC4 LINE L1 7166 7312 -730 8 1386 700 236 195 100 chr9 104994717 104994964 -19081208 - MTE2a LTR MaLR -8 371 75 8 1386 2241 174 70 47 chr9 104994964 104995129 -19081043 - RLTR19 LTR ERVK -1 498 323 8 1386 207 0 0 0 chr9 104995129 104995152 -19081020 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1386 2241 174 70 47 chr9 104995152 104995473 -19080699 - RLTR19 LTR ERVK -177 322 1 8 1386 700 236 195 100 chr9 104995473 104995564 -19080608 - MTE2a LTR MaLR -305 74 1 8 1386 948 125 0 0 chr9 104995791 104995935 -19080237 + B1_Mur3 SINE Alu 6 149 0 8 1386 358 341 120 19 chr9 104995949 104996257 -19079915 + L1M5 LINE L1 2320 2658 -3488 8 1386 246 169 0 0 chr9 104996605 104996670 -19079502 + CT-rich Low_complexity Low_complexity 2 66 0 8 1386 361 280 44 82 chr9 104996761 104996967 -19079205 + MLT1C LTR MaLR 262 459 -8 8 1386 443 268 256 0 chr9 104998311 104998436 -19077736 + B3 SINE B2 1 147 -69 8 1386 225 0 0 0 chr9 104998436 104998461 -19077711 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1386 443 268 256 0 chr9 104998461 104998503 -19077669 + B3 SINE B2 148 210 -6 8 1386 817 275 79 36 chr9 104998782 104999156 -19077016 + MTE-int LTR MaLR 746 1192 -388 8 1386 256 235 12 0 chr9 104999168 104999253 -19076919 + L1_Mur2 LINE L1 3225 3310 -2567 8 1386 414 0 0 0 chr9 104999310 104999356 -19076816 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1386 1088 52 0 50 chr9 104999478 104999639 -19076533 - L1Md_F3 LINE L1 -2 6582 6430 8 1386 225 0 0 0 chr9 104999975 105000000 -19076172 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1386 679 286 122 12 chr9 105000011 105000266 -19075906 - B4A SINE B4 -2 290 8 1 1386 213 285 141 46 chr9 105000279 105000386 -19075786 - MIRb SINE MIR -127 149 36 2 1386 378 147 0 0 chr9 105000696 105000764 -19075408 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1386 517 166 0 33 chr9 105001198 105001348 -19074824 + (TG)n Simple_repeat Simple_repeat 2 146 0 4 1386 304 182 16 43 chr9 105001385 105001569 -19074603 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1386 417 194 11 23 chr9 105001604 105001778 -19074394 + (TG)n Simple_repeat Simple_repeat 2 173 0 4 1386 200 182 0 0 chr9 105002425 105002458 -19073714 + (CGTG)n Simple_repeat Simple_repeat 2 34 0 5 1386 376 107 0 0 chr9 105002458 105002514 -19073658 - B1_Mus2 SINE Alu -91 56 1 6 1386 306 0 0 0 chr9 105002982 105003016 -19073156 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1386 262 234 0 15 chr9 105003482 105003547 -19072625 + (TATG)n Simple_repeat Simple_repeat 1 64 0 8 1386 342 266 204 49 chr9 105003547 105003772 -19072400 - B4A SINE B4 0 292 33 9 1386 436 352 46 34 chr9 105003824 105004174 -19071998 - L1M2 LINE L1 -3135 3008 2655 1 1386 2405 159 26 22 chr9 105004258 105004715 -19071457 + MT2A LTR ERVL 1 459 -74 1 1386 522 119 19 19 chr9 105004767 105004870 -19071302 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1 1386 1636 140 21 7 chr9 105004871 105005152 -19071020 + RLTR14 LTR ERV1 93 377 -5 1 1386 226 179 44 15 chr9 105005160 105005228 -19070944 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1386 1119 93 0 0 chr9 105005240 105005402 -19070770 + (TG)n Simple_repeat Simple_repeat 2 163 0 1 1386 1696 26 0 0 chr9 105005803 105005993 -19070179 - B2_Mm1a SINE B2 -2 191 2 1 1386 205 342 0 0 chr9 105006413 105006489 -19069683 + MIR SINE MIR 20 95 -167 1 1386 239 339 76 0 chr9 105006797 105006915 -19069257 - MER115 DNA Tip100 -146 547 421 1 1386 24120 129 64 47 chr9 105007079 105010969 -19065203 + L1_Mur1 LINE L1 891 4967 -919 1 1386 767 97 0 0 chr9 105010969 105011082 -19065090 + B1_Mm SINE Alu 35 147 0 2 1386 24120 129 64 47 chr9 105011082 105011132 -19065040 + L1_Mur1 LINE L1 4968 5021 -865 1 1386 1161 118 0 0 chr9 105011132 105011310 -19064862 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2 1386 24120 129 45 49 chr9 105011310 105011925 -19064247 + L1_Mur1 LINE L1 5022 5627 -259 1 1386 4004 131 49 0 chr9 105011925 105012559 -19063613 + Lx3C LINE L1 6311 6975 -1 2 1386 2008 54 0 0 chr9 105012629 105012870 -19063302 + L1Md_F2 LINE L1 5346 5586 -297 2 1386 8306 40 4 5 chr9 105012871 105013867 -19062305 + L1Md_F2 LINE L1 5588 6582 0 2 1386 1620 34 0 10 chr9 105013863 105014069 -19062103 + L1Md_F3 LINE L1 6381 6584 0 2 1386 24 0 0 0 chr9 105014235 105014259 -19061913 + AT_rich Low_complexity Low_complexity 1 24 0 2 1386 255 295 13 0 chr9 105014837 105014915 -19061257 + RSINE1 SINE B4 8 86 -79 2 1386 876 207 42 0 chr9 105014846 105015039 -19061133 + B3 SINE B2 16 216 0 2 1386 343 309 32 0 chr9 105015147 105015270 -19060902 + MIR SINE MIR 108 234 -28 1 1386 234 290 40 92 chr9 105015389 105015541 -19060631 - MLT1N2 LTR MaLR -358 204 61 2 1386 596 253 62 45 chr9 105015667 105015845 -19060327 - B3A SINE B2 -16 182 2 2 1386 780 68 0 0 chr9 105016232 105016335 -19059837 + (GA)n Simple_repeat Simple_repeat 2 104 0 3 1386 567 301 164 3 chr9 105016412 105016789 -19059383 + L1ME2z LINE L1 5872 6309 -135 3 1386 186 324 38 0 chr9 105017141 105017246 -19058926 - MIR3 SINE MIR -22 186 78 3 1386 4150 154 70 11 chr9 105017820 105017935 -19058237 - RMER1A Other Other -12 1018 877 3 1386 366 23 0 0 chr9 105017935 105017978 -19058194 + (CAA)n Simple_repeat Simple_repeat 3 45 0 3 1386 4150 169 69 11 chr9 105017978 105018663 -19057509 - RMER1A Other Other -154 876 263 3 1386 534 244 114 0 chr9 105018726 105018849 -19057323 + ID_B1 SINE B4 80 216 -8 3 1386 249 57 0 0 chr9 105018851 105018886 -19057286 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1386 221 250 19 0 chr9 105018889 105018941 -19057231 + ID4_ SINE ID 31 83 0 3 1386 522 0 0 0 chr9 105019363 105019421 -19056751 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1386 221 158 49 0 chr9 105019482 105019564 -19056608 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 3 1386 22 0 0 0 chr9 105019582 105019604 -19056568 + AT_rich Low_complexity Low_complexity 1 22 0 4 1386 3559 20 2 0 chr9 105019756 105020151 -19056021 + MTA_Mm LTR MaLR 1 396 0 4 1386 9289 36 2 1 chr9 105020151 105021248 -19054924 + MTA_Mm-int LTR MaLR 1 1098 0 4 1386 3441 33 2 0 chr9 105021248 105021643 -19054529 + MTA_Mm LTR MaLR 1 396 0 4 1386 628 202 25 0 chr9 105021751 105021914 -19054258 + (CATA)n Simple_repeat Simple_repeat 4 170 0 4 1386 873 254 208 24 chr9 105022759 105023183 -19052989 - RMER5 LTR ERV1 0 534 33 4 1386 225 344 42 84 chr9 105023869 105024012 -19052160 + B4A SINE B4 36 172 -120 4 1386 211 228 0 54 chr9 105024203 105024280 -19051892 + CT-rich Low_complexity Low_complexity 1 72 0 4 1386 242 206 16 0 chr9 105024280 105024343 -19051829 + C-rich Low_complexity Low_complexity 2 65 0 4 1386 198 0 0 0 chr9 105025097 105025119 -19051053 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1386 750 268 47 0 chr9 105025545 105025735 -19050437 + ORR1E LTR MaLR 51 249 -110 4 1386 1090 152 20 253 chr9 105025742 105026162 -19050010 + ORR1B1 LTR MaLR 1 364 -30 4 1386 833 127 119 13 chr9 105026161 105026316 -19049856 - ORR1A0 LTR MaLR -19 351 185 5 1386 666 0 0 0 chr9 105027413 105027487 -19048685 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1386 1186 274 45 15 chr9 105027980 105028310 -19047862 - MTE2a LTR MaLR -36 343 4 5 1386 588 246 164 18 chr9 105028559 105028778 -19047394 + MTEb LTR MaLR 120 370 -9 5 1386 244 302 140 9 chr9 105030034 105030141 -19046031 + MLT1H1 LTR MaLR 291 411 -144 5 1386 631 233 122 0 chr9 105030173 105030353 -19045819 - ID_B1 SINE B4 -18 206 5 5 1386 572 0 0 14 chr9 105030417 105030486 -19045686 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 5 1386 4717 45 2 7 chr9 105030593 105031172 -19045000 + L1Md_F3 LINE L1 6009 6584 0 5 1386 1941 97 33 0 chr9 105031186 105031486 -19044686 + MusHAL1 LINE L1 652 961 -1751 5 1386 237 55 17 69 chr9 105031971 105032029 -19044143 + (TTTTTG)n Simple_repeat Simple_repeat 4 58 0 5 1386 185 247 27 162 chr9 105035363 105035392 -19040780 + MER5B DNA MER1_type 13 40 -138 6 1386 706 75 9 9 chr9 105035392 105035499 -19040673 + (GAA)n Simple_repeat Simple_repeat 2 108 0 6 1386 185 247 27 162 chr9 105035499 105035580 -19040592 + MER5B DNA MER1_type 41 108 -70 6 1386 837 251 47 50 chr9 105035684 105035961 -19040211 - B4A SINE B4 -14 278 3 6 1386 339 298 47 35 chr9 105036386 105036580 -19039592 + L1MC3 LINE L1 6648 6875 -1007 6 1386 341 257 8 68 chr9 105036916 105037033 -19039139 + L1MC3 LINE L1 7156 7265 -520 6 1386 554 262 147 39 chr9 105037074 105037263 -19038909 + L1MC3 LINE L1 7249 7457 -328 6 1386 929 280 53 34 chr9 105037263 105037621 -19038551 - MLT1A0 LTR MaLR 0 365 1 6 1386 554 262 147 39 chr9 105037621 105037820 -19038352 + L1MC3 LINE L1 7458 7679 -106 6 1386 639 0 0 0 chr9 105037954 105038025 -19038147 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1386 198 0 0 0 chr9 105038672 105038694 -19037478 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1386 717 79 0 0 chr9 105040119 105040220 -19035952 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 1386 817 311 35 12 chr9 105040237 105040491 -19035681 - B4 SINE B4 -4 288 29 6 1386 1359 192 165 3 chr9 105040541 105040917 -19035255 + MERVL_2A-int LTR ERVL 4223 4659 -1102 6 1386 1499 188 138 39 chr9 105040926 105041309 -19034863 - MTC LTR MaLR 0 421 1 7 1386 2145 71 3 0 chr9 105042414 105042710 -19033462 - ORR1A2 LTR MaLR 0 327 31 7 1386 602 13 13 0 chr9 105042954 105043029 -19033143 + (TG)n Simple_repeat Simple_repeat 2 77 0 7 1386 450 0 0 0 chr9 105043700 105043750 -19032422 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1386 419 146 0 3 chr9 105044405 105044482 -19031690 - Lx5 LINE L1 -1315 5735 5655 7 1386 458 189 9 0 chr9 105044482 105044588 -19031584 + (TA)n Simple_repeat Simple_repeat 1 107 0 7 1386 2060 93 22 3 chr9 105045070 105045384 -19030788 - ORR1A2 LTR MaLR 0 327 8 7 1386 534 16 0 0 chr9 105046548 105046611 -19029561 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1386 7119 158 66 14 chr9 105047691 105050007 -19026165 - Lx5 LINE L1 -5 7045 4621 7 1386 38168 60 4 4 chr9 105050009 105056197 -19019975 - L1Md_F3 LINE L1 -14 6570 422 7 1386 8148 133 49 11 chr9 105056200 105057599 -19018573 - Lx5 LINE L1 -1244 4633 3183 7 1386 1414 167 0 0 chr9 105057593 105057833 -19018339 - Lx5 LINE L1 -3361 2516 2277 7 1386 1151 199 28 11 chr9 105057869 105058339 -19017833 - Lx5 LINE L1 -4433 1444 901 7 1386 505 274 19 31 chr9 105058590 105058752 -19017420 + MLT1A0 LTR MaLR 137 296 -69 8 1386 503 218 0 0 chr9 105059124 105059225 -19016947 + RMER1B Other Other 948 1048 -18 8 1386 1122 221 16 41 chr9 105059685 105059930 -19016242 - Lx5 LINE L1 -10 7040 6802 8 1386 11514 69 22 13 chr9 105059929 105060007 -19016165 - L1VL4 LINE L1 -1072 2487 2418 8 1386 2275 129 102 12 chr9 105060007 105060408 -19015764 + RLTR9B LTR ERVK 1 437 0 8 1386 11514 81 21 9 chr9 105060408 105062592 -19013580 - L1VL4 LINE L1 -1142 2417 197 8 1386 189 147 0 0 chr9 105062648 105062682 -19013490 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1386 204 40 0 0 chr9 105062682 105062707 -19013465 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 1386 1337 237 57 17 chr9 105063418 105063724 -19012448 - MTD LTR MaLR -41 378 62 8 1386 489 34 0 0 chr9 105063724 105063783 -19012389 + (TTA)n Simple_repeat Simple_repeat 1 59 0 8 1386 1337 237 57 17 chr9 105063783 105063828 -19012344 - MTD LTR MaLR -358 61 14 8 1386 189 0 0 0 chr9 105063934 105063955 -19012217 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1386 2124 186 12 26 chr9 105063979 105064398 -19011774 + MTC LTR MaLR 1 413 -8 9 1386 240 254 0 0 chr9 105064399 105064454 -19011718 + B3 SINE B2 155 209 -7 9 1386 1287 114 124 0 chr9 105064555 105064756 -19011416 - URR1A DNA MER1_type 0 226 1 9 1386 188 347 27 0 chr9 105065766 105065841 -19010331 - L2a LINE L2 -30 3396 3320 9 1386 570 207 17 0 chr9 105066954 105067070 -19009102 - ID_B1 SINE B4 -2 222 105 9 1386 495 0 0 0 chr9 105067725 105067780 -19008392 + (TATG)n Simple_repeat Simple_repeat 2 56 0 9 1386 1409 293 44 38 chr9 105067794 105068445 -19007727 - L1MA5 LINE L1 -375 5925 5266 9 1386 1436 291 32 9 chr9 105068437 105068970 -19007202 + L1MA5 LINE L1 4729 5269 -874 9 1386 1484 183 53 13 chr9 105068970 105069274 -19006898 + Lx5 LINE L1 6735 7050 0 9 1386 1436 291 32 9 chr9 105069274 105069305 -19006867 + L1MA4A LINE L1 5270 5305 -838 9 1386 418 288 54 12 chr9 105070532 105070699 -19005473 - L1MD LINE L1 -624 5679 5501 9 1386 2159 126 19 5 chr9 105070699 105071066 -19005106 + RLTR31_Mm LTR ERVK 1 372 -189 9 1386 884 284 80 28 chr9 105071316 105071704 -19004468 + L1M3 LINE L1 4043 4450 -1690 1 1386 798 316 62 46 chr9 105071776 105072392 -19003780 + L1MA5A LINE L1 5166 5827 -470 1 1386 772 230 52 70 chr9 105072395 105072624 -19003548 + B4A SINE B4 3 227 -65 1 1386 376 329 49 7 chr9 105072628 105072772 -19003400 + RSINE1 SINE B4 4 153 -12 1 1386 449 277 76 18 chr9 105072908 105073142 -19003030 + L1MA4A LINE L1 5783 6024 -273 9 1386 270 176 0 0 chr9 105073304 105073355 -19002817 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1386 381 164 110 0 chr9 105074345 105074418 -19001754 + ID2 SINE ID 3 83 0 1 1386 916 255 28 14 chr9 105074423 105074705 -19001467 + B4A SINE B4 1 286 -6 1 1386 574 220 11 0 chr9 105074941 105075118 -19001054 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1386 180 0 0 0 chr9 105075634 105075654 -19000518 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1386 356 69 17 33 chr9 105075654 105075714 -19000458 - HAL1-3A_ME LINE L1 -824 2034 1976 1 1386 275 0 29 0 chr9 105075719 105075754 -19000418 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1386 486 0 0 0 chr9 105075754 105075807 -19000365 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1386 332 287 75 2 chr9 105075919 105076056 -19000116 - B4A SINE B4 -147 145 1 1 1386 350 253 43 21 chr9 105076105 105076198 -18999974 - B1_Mus2 SINE Alu -52 95 1 1 1386 1007 249 44 90 chr9 105076393 105076760 -18999412 - MTE2a LTR MaLR 0 379 30 1 1386 754 251 91 10 chr9 105076998 105077195 -18998977 + B3 SINE B2 3 215 -1 1 1386 379 216 50 9 chr9 105077426 105077749 -18998423 + GA-rich Low_complexity Low_complexity 1 336 0 1 1386 5058 89 16 6 chr9 105077914 105078603 -18997569 - Lx LINE L1 -2 6652 5957 1 1386 1557 17 0 0 chr9 105078618 105078798 -18997374 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1386 868 135 11 27 chr9 105078803 105078986 -18997186 + CT-rich Low_complexity Low_complexity 1 180 0 1 1386 1566 311 52 24 chr9 105079009 105079637 -18996535 + Lx8 LINE L1 6828 7473 0 1 1386 4109 83 24 2 chr9 105079703 105080429 -18995743 - Lx LINE L1 -683 5971 5216 1 1386 4301 163 3 9 chr9 105080429 105081177 -18994995 + L1_Mur2 LINE L1 4454 5196 -681 1 1386 402 278 23 0 chr9 105081674 105081807 -18994365 + L1MA5 LINE L1 6165 6300 0 1 1386 207 0 0 0 chr9 105082359 105082382 -18993790 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1386 679 275 103 62 chr9 105082396 105082668 -18993504 + B4 SINE B4 2 284 -8 1 1386 901 293 86 39 chr9 105082988 105083350 -18992822 - MTE2a LTR MaLR 0 379 1 1 1386 203 225 99 83 chr9 105083517 105083638 -18992534 + L2c LINE L2 3195 3317 -70 1 1386 789 158 0 0 chr9 105084418 105084557 -18991615 + (CAGAGA)n Simple_repeat Simple_repeat 2 140 0 1 1386 284 185 23 58 chr9 105084557 105084643 -18991529 + PB1 SINE Alu 43 125 -2 1 1386 229 238 31 16 chr9 105084854 105084918 -18991254 + RMER15 LTR ERVL 403 467 -108 1 1386 207 289 0 0 chr9 105085138 105085190 -18990982 + T-rich Low_complexity Low_complexity 5 56 0 1 1386 1192 56 0 0 chr9 105085380 105085540 -18990632 + B2_Mm2 SINE B2 1 160 -35 1 1386 534 16 0 0 chr9 105085552 105085615 -18990557 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 1 1386 422 252 77 19 chr9 105086129 105086348 -18989824 + L1MA7 LINE L1 5724 5967 -189 1 1386 422 286 112 11 chr9 105086410 105086598 -18989574 - MTD LTR MaLR -240 179 7 1 1386 518 293 53 57 chr9 105086883 105087111 -18989061 - RMER15 LTR ERVL -3 572 346 1 1386 519 17 0 0 chr9 105087781 105087841 -18988331 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1386 459 78 0 0 chr9 105089541 105089605 -18986567 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1386 261 75 0 0 chr9 105089649 105089689 -18986483 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1386 512 276 52 7 chr9 105089912 105090047 -18986125 + Lx8 LINE L1 7173 7313 -160 1 1386 892 204 20 1 chr9 105091011 105091201 -18984971 + B3 SINE B2 22 216 0 1 1386 668 77 8 25 chr9 105092179 105092299 -18983873 + (GA)n Simple_repeat Simple_repeat 1 118 0 1 1386 381 298 103 28 chr9 105092585 105092799 -18983373 + L1MCa LINE L1 31 260 -6248 1 1386 289 211 0 17 chr9 105092859 105092917 -18983255 + L1MCa LINE L1 3142 3198 -3123 1 1386 585 240 0 0 chr9 105093055 105093230 -18982942 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 1386 444 301 9 9 chr9 105093239 105093353 -18982819 - B4A SINE B4 0 292 179 1 1386 322 256 26 0 chr9 105093475 105093553 -18982619 - B4 SINE B4 -197 95 16 1 1386 315 0 0 0 chr9 105095965 105096000 -18980172 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1386 252 86 0 0 chr9 105096000 105096034 -18980138 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1386 580 308 6 6 chr9 105096049 105096222 -18979950 - B4 SINE B4 -37 255 83 1 1386 351 0 0 0 chr9 105096784 105096823 -18979349 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1386 486 143 0 0 chr9 105096823 105096914 -18979258 + (GA)n Simple_repeat Simple_repeat 1 91 0 1 1386 521 214 181 5 chr9 105098162 105098355 -18977817 + B4A SINE B4 1 227 -65 1 1386 2166 152 62 11 chr9 105098561 105098934 -18977238 + ORR1B1 LTR MaLR 3 394 0 1 1386 269 284 29 94 chr9 105099218 105099389 -18976783 + L1ME1 LINE L1 5912 6071 -108 1 1386 337 272 88 0 chr9 105099678 105099803 -18976369 - MER5A1 DNA MER1_type 0 166 31 1 1386 417 244 174 29 chr9 105100568 105100775 -18975397 + L1MC4 LINE L1 7453 7689 -193 1 1386 211 255 0 0 chr9 105101003 105101050 -18975122 + RSINE1 SINE B4 83 129 -36 1 1386 492 18 0 0 chr9 105101077 105101134 -18975038 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1386 414 278 8 34 chr9 105101300 105101403 -18974769 + PB1D10 SINE Alu 1 104 -13 1 1386 261 83 0 0 chr9 105101403 105101439 -18974733 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 1386 414 278 8 34 chr9 105101439 105101454 -18974718 + PB1D10 SINE Alu 105 116 -1 1 1386 1226 90 0 6 chr9 105101735 105101914 -18974258 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1 1386 207 0 0 0 chr9 105101970 105101993 -18974179 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1386 631 251 90 7 chr9 105102079 105102260 -18973912 + Lx7 LINE L1 7119 7305 -168 1 1386 327 49 0 0 chr9 105102260 105102301 -18973871 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1386 367 316 88 94 chr9 105102301 105102447 -18973725 + Lx7 LINE L1 7306 7447 -26 1 1386 3286 55 5 0 chr9 105102917 105103315 -18972857 + MTB LTR MaLR 1 400 0 1 1386 246 346 49 10 chr9 105103463 105103565 -18972607 + MER58B DNA MER1_type 4 109 -232 1 1386 543 303 29 9 chr9 105103641 105103851 -18972321 + MER58B DNA MER1_type 101 314 -27 1 1386 599 305 137 38 chr9 105104038 105104403 -18971769 + MLT1A1 LTR MaLR 8 408 0 1 1386 2145 309 123 33 chr9 105104403 105105496 -18970676 + MLT1A1-int LTR MaLR 1 1257 -478 1 1386 426 271 311 16 chr9 105105574 105105761 -18970411 + B4 SINE B4 1 242 -50 1 1386 1359 88 0 0 chr9 105105761 105106230 -18969942 + (CA)n Simple_repeat Simple_repeat 1 469 0 1 1386 319 306 75 0 chr9 105106238 105106385 -18969787 + MLT1A1-int LTR MaLR 1387 1544 -191 1 1386 2680 68 3 8 chr9 105106443 105106799 -18969373 - L1Md_F2 LINE L1 -2 6580 6227 1 1386 556 310 20 32 chr9 105106804 105107050 -18969122 + MLT1A1 LTR MaLR 127 408 0 1 1386 826 208 24 48 chr9 105107871 105108078 -18968094 + B3 SINE B2 15 216 0 1 1386 705 11 32 0 chr9 105109931 105110025 -18966147 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 1386 201 204 37 62 chr9 105110243 105110405 -18965767 + CT-rich Low_complexity Low_complexity 2 159 0 1 1386 248 186 33 65 chr9 105110424 105110608 -18965564 + CT-rich Low_complexity Low_complexity 2 179 0 1 1386 8393 41 1 0 chr9 105111575 105112630 -18963542 - L1Md_F2 LINE L1 -12 6570 5515 1 1386 786 311 14 10 chr9 105112792 105113000 -18963172 - MER58A DNA MER1_type -15 209 1 1 1386 223 343 32 25 chr9 105113061 105113204 -18962968 - MIRm SINE MIR -121 155 9 1 1386 230 351 178 0 chr9 105113623 105113814 -18962358 + LTR16A1 LTR ERVL 137 361 -95 1 1386 192 337 214 0 chr9 105115528 105115626 -18960546 + MER5A DNA MER1_type 3 121 -68 1 1386 801 324 148 24 chr9 105115904 105116355 -18959817 + MLT2B3 LTR ERVL 1 503 -51 1 1386 647 46 0 11 chr9 105116355 105116443 -18959729 + (TATG)n Simple_repeat Simple_repeat 1 87 0 1 1386 801 324 148 24 chr9 105116443 105116484 -18959688 + MLT2B3 LTR ERVL 504 553 -1 1 1386 358 256 16 93 chr9 105117205 105117334 -18958838 + RSINE1 SINE B4 5 123 -42 1 1386 441 0 0 0 chr9 105117335 105117384 -18958788 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1386 426 211 156 0 chr9 105117558 105117686 -18958486 + MTD LTR MaLR 267 414 -5 1 1386 2159 69 128 0 chr9 105117695 105117984 -18958188 - ORR1A3 LTR MaLR 0 326 1 1 1386 617 137 11 0 chr9 105118336 105118431 -18957741 + B1_Mur2 SINE Alu 53 148 -1 1 1386 354 254 172 0 chr9 105118583 105118705 -18957467 + L1M2 LINE L1 5547 5689 -602 1 1386 286 310 116 48 chr9 105119075 105119326 -18956846 - HAL1 LINE L1 -2002 505 238 1 1386 250 330 36 36 chr9 105119623 105119733 -18956439 - Charlie15a DNA MER1_type -4 220 111 1 1387 223 236 20 119 chr9 105120733 105120834 -18955338 + MIR3 SINE MIR 104 194 -14 1 1387 4841 82 0 6 chr9 105121281 105121921 -18954251 - L1Md_T LINE L1 0 6582 5947 1 1387 4223 34 2 4 chr9 105122878 105123378 -18952794 - L1Md_F2 LINE L1 0 6582 6084 1 1387 1060 132 105 11 chr9 105123459 105123650 -18952522 - B3 SINE B2 -6 210 2 1 1387 613 288 118 52 chr9 105123736 105124007 -18952165 - MLT1A0 LTR MaLR -75 290 2 1 1387 5195 118 23 48 chr9 105124081 105124991 -18951181 - RMER17A2 LTR ERVK 0 906 20 1 1387 221 221 45 125 chr9 105124946 105125034 -18951138 + B4A SINE B4 53 133 -159 1 1387 320 356 119 70 chr9 105125058 105125360 -18950812 + MLT1G3 LTR MaLR 2 318 -277 1 1387 980 254 69 4 chr9 105125529 105125762 -18950410 + B4A SINE B4 27 274 -18 1 1387 810 81 0 0 chr9 105125772 105125883 -18950289 + (TC)n Simple_repeat Simple_repeat 1 111 0 1 1387 270 418 0 0 chr9 105126168 105126302 -18949870 - Lx8 LINE L1 -141 7332 7199 1 1387 479 274 93 88 chr9 105126407 105126611 -18949561 - MER20 DNA MER1_type -5 214 10 2 1387 240 185 0 0 chr9 105126616 105126670 -18949502 + (CAAT)n Simple_repeat Simple_repeat 3 56 0 2 1387 1211 230 155 0 chr9 105126892 105127147 -18949025 - MTD LTR MaLR -2 417 129 2 1387 468 0 0 0 chr9 105127147 105127199 -18948973 + (TAA)n Simple_repeat Simple_repeat 1 52 0 2 1387 1211 230 155 0 chr9 105127199 105127304 -18948868 - MTD LTR MaLR -291 128 3 2 1387 284 351 44 31 chr9 105127497 105127656 -18948516 + RMER15 LTR ERVL 403 563 -12 2 1387 225 154 0 0 chr9 105128469 105128508 -18947664 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1387 311 0 26 0 chr9 105129093 105129132 -18947040 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1387 1033 274 106 49 chr9 105129526 105130050 -18946122 + RLTR12B LTR ERVK 3 561 -7 2 1387 27 0 0 0 chr9 105130826 105130853 -18945319 + AT_rich Low_complexity Low_complexity 1 27 0 2 1387 3048 175 22 4 chr9 105130949 105131500 -18944672 + Lx LINE L1 6094 6654 0 2 1387 264 77 0 0 chr9 105131527 105131566 -18944606 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 2 1387 2116 226 87 38 chr9 105131566 105132219 -18943953 + MYSERV6-int LTR ERVK 1085 1769 -7190 2 1387 1899 113 7 0 chr9 105132344 105132618 -18943554 + ORR1A2 LTR MaLR 1 276 -51 2 1387 351 314 84 97 chr9 105132640 105132866 -18943306 + B4 SINE B4 53 275 -17 2 1387 412 175 10 10 chr9 105132932 105133030 -18943142 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 1387 216 265 14 29 chr9 105133701 105133771 -18942401 - B1F SINE Alu -1 148 80 2 1387 355 257 179 9 chr9 105134252 105134358 -18941814 + MIR SINE MIR 21 144 -118 2 1387 531 0 0 0 chr9 105135428 105135487 -18940685 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1387 250 250 33 0 chr9 105136185 105136245 -18939927 + CT-rich Low_complexity Low_complexity 4 65 0 2 1387 301 267 13 0 chr9 105136265 105136340 -18939832 - ID4 SINE ID -3 80 5 2 1387 192 179 0 0 chr9 105136757 105136796 -18939376 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 2 1387 217 329 169 66 chr9 105136811 105137218 -18938954 - L2a LINE L2 -16 3410 2962 2 1387 354 184 0 0 chr9 105137323 105137399 -18938773 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1387 267 294 101 35 chr9 105137400 105137569 -18938603 - L2a LINE L2 -680 2739 2560 2 1387 331 324 71 80 chr9 105139856 105140094 -18936078 + MamRep137 DNA TcMar? 178 413 -31 2 1387 518 293 133 37 chr9 105140223 105140464 -18935708 + LTR16B1 LTR ERVL 51 314 -166 2 1387 2219 152 77 0 chr9 105141554 105141917 -18934255 - ORR1B1 LTR MaLR -3 391 1 2 1387 3960 226 154 23 chr9 105141918 105142550 -18933622 - ORR1B1-int LTR MaLR -1 1369 648 2 1387 510 212 73 41 chr9 105142550 105142673 -18933499 - B1_Mur3 SINE Alu -19 130 4 2 1387 3960 226 154 23 chr9 105142673 105143251 -18932921 - ORR1B1-int LTR MaLR -723 647 1 2 1387 2609 111 17 40 chr9 105143251 105143300 -18932872 - ORR1B1 LTR MaLR 0 394 353 2 1387 2841 70 5 3 chr9 105143300 105143674 -18932498 - L1_Mus3 LINE L1 -3 6635 6261 2 1387 2609 114 19 40 chr9 105143674 105144035 -18932137 - ORR1B1 LTR MaLR -42 352 1 2 1387 188 333 50 50 chr9 105144339 105144459 -18931713 + MIR SINE MIR 21 141 -67 2 1387 257 331 85 40 chr9 105144723 105144899 -18931273 - MIR SINE MIR -44 218 35 2 1387 926 236 9 58 chr9 105145437 105145662 -18930510 - B3 SINE B2 0 216 3 2 1387 359 245 84 12 chr9 105145798 105145908 -18930264 + PB1D7 SINE Alu 2 117 -3 2 1387 189 331 80 40 chr9 105147715 105147876 -18928296 + MIRm SINE MIR 37 193 -75 2 1387 528 220 144 0 chr9 105148033 105148151 -18928021 - RSINE1 SINE B4 -29 136 2 2 1387 653 0 0 13 chr9 105148357 105148435 -18927737 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2 1387 2096 170 56 99 chr9 105148438 105148953 -18927219 + RMER6C LTR ERVK 198 690 0 2 1387 821 141 36 7 chr9 105148991 105149299 -18926873 + CT-rich Low_complexity Low_complexity 1 317 0 2 1387 193 354 51 0 chr9 105149747 105149826 -18926346 + MIRc SINE MIR 82 164 -104 2 1387 288 275 12 48 chr9 105150945 105151029 -18925143 - MER5A DNA MER1_type -23 166 86 2 1387 549 0 0 0 chr9 105151037 105151098 -18925074 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1387 603 229 0 84 chr9 105151106 105151227 -18924945 - B3A SINE B2 -67 131 17 2 1387 2522 35 109 0 chr9 105151227 105151539 -18924633 - ORR1A0 LTR MaLR 0 346 1 2 1387 603 229 0 84 chr9 105151539 105151560 -18924612 - B3A SINE B2 -182 16 1 2 1387 342 241 0 25 chr9 105151560 105151636 -18924536 - MER5A DNA MER1_type -114 75 2 2 1387 185 304 29 94 chr9 105151857 105151995 -18924177 - MIRb SINE MIR -21 247 119 2 1387 266 345 106 0 chr9 105152303 105152416 -18923756 - MER5A DNA MER1_type -9 180 56 2 1387 459 0 0 0 chr9 105152635 105152686 -18923486 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1387 860 329 12 12 chr9 105152691 105152943 -18923229 - B4A SINE B4 -39 253 2 2 1387 325 252 67 82 chr9 105153033 105153112 -18923060 + MER5A DNA MER1_type 40 115 -74 2 1387 240 302 0 0 chr9 105153112 105153175 -18922997 + ID4_ SINE ID 5 67 -16 2 1387 325 252 67 82 chr9 105153175 105153229 -18922943 + MER5A DNA MER1_type 116 171 -18 2 1387 266 241 17 0 chr9 105153549 105153607 -18922565 + ORR1E LTR MaLR 1 59 -300 2 1387 1769 232 19 8 chr9 105153905 105154279 -18921893 + ORR1C1 LTR MaLR 1 378 0 2 1387 396 191 0 0 chr9 105155489 105155578 -18920594 + (TG)n Simple_repeat Simple_repeat 1 89 0 2 1387 414 182 152 0 chr9 105155756 105155855 -18920317 - MER3 DNA MER1_type -17 192 79 2 1387 210 236 0 0 chr9 105156745 105156800 -18919372 + GA-rich Low_complexity Low_complexity 4 58 0 2 1387 728 281 88 44 chr9 105157253 105157525 -18918647 - MLT1A LTR MaLR -6 368 85 2 1387 384 243 257 71 chr9 105158441 105158721 -18917451 - MLT2D LTR ERVL -79 335 4 2 1387 832 215 104 10 chr9 105159211 105159404 -18916768 + B3 SINE B2 1 211 -5 2 1387 219 69 0 0 chr9 105159773 105159802 -18916370 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1387 252 77 0 0 chr9 105160373 105160412 -18915760 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1387 1374 281 72 17 chr9 105161274 105161748 -18914424 + RMER5 LTR ERV1 33 532 -2 2 1387 558 0 0 0 chr9 105161856 105161918 -18914254 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1387 680 295 80 63 chr9 105162971 105163336 -18912836 - MTEb LTR MaLR -8 371 1 2 1387 1613 310 54 49 chr9 105163338 105163928 -18912244 - MTEb-int LTR MaLR -2 1578 986 2 1387 299 257 13 26 chr9 105163963 105164119 -18912053 + GA-rich Low_complexity Low_complexity 4 157 0 2 1387 195 42 0 0 chr9 105164122 105164146 -18912026 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 2 1387 373 314 90 74 chr9 105164161 105164350 -18911822 - MTEa LTR MaLR -182 197 6 2 1387 335 356 108 30 chr9 105164415 105164684 -18911488 - L1M5 LINE L1 -541 5699 5410 2 1387 261 202 0 67 chr9 105164885 105164975 -18911197 + CT-rich Low_complexity Low_complexity 2 85 0 2 1387 1174 194 67 58 chr9 105165335 105165694 -18910478 + RMER16 LTR ERVK 1 533 0 2 1387 21 0 0 0 chr9 105166584 105166605 -18909567 + AT_rich Low_complexity Low_complexity 1 21 0 2 1387 919 268 76 45 chr9 105167149 105167594 -18908578 - L1M2 LINE L1 -531 5769 5311 2 1387 527 252 14 36 chr9 105168488 105168628 -18907544 + ID_B1 SINE B4 1 137 -87 2 1387 186 43 0 0 chr9 105168970 105168993 -18907179 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1387 461 272 188 11 chr9 105169186 105169372 -18906800 + B4 SINE B4 1 219 -73 2 1387 279 175 109 16 chr9 105169500 105169564 -18906608 + ID4_ SINE ID 10 79 -4 2 1387 231 213 0 62 chr9 105170713 105170778 -18905394 + Charlie1b DNA MER1_type 1 61 -462 2 1387 340 294 169 20 chr9 105170821 105171022 -18905150 + Charlie1b DNA MER1_type 142 372 -151 2 1387 821 216 86 126 chr9 105171064 105171366 -18904806 - B4A SINE B4 -1 291 2 2 1387 555 309 116 43 chr9 105171569 105172077 -18904095 + L1MC4a LINE L1 7331 7875 -7 2 1387 434 222 44 0 chr9 105172074 105172164 -18904008 + Lx8 LINE L1 6820 6913 -560 2 1387 1196 245 112 3 chr9 105172286 105172626 -18903546 + MTE2a LTR MaLR 1 377 -2 2 1387 263 234 15 15 chr9 105172649 105172714 -18903458 + MER5A DNA MER1_type 60 124 -65 2 1387 251 358 0 0 chr9 105172748 105172829 -18903343 - MER63C DNA AcHobo -567 363 283 2 1387 504 0 0 0 chr9 105173023 105173079 -18903093 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1387 1012 239 137 32 chr9 105173383 105173698 -18902474 + Lx8 LINE L1 7125 7472 -1 2 1387 1158 88 0 0 chr9 105173721 105173869 -18902303 + B1_Mus1 SINE Alu 1 148 0 2 1387 23 0 0 0 chr9 105174926 105174949 -18901223 + AT_rich Low_complexity Low_complexity 1 23 0 2 1387 34 0 0 0 chr9 105175922 105175956 -18900216 + AT_rich Low_complexity Low_complexity 1 34 0 2 1387 249 242 161 32 chr9 105176617 105176741 -18899431 - MER5A1 DNA MER1_type -2 164 25 2 1387 329 206 0 10 chr9 105177099 105177197 -18898975 + CT-rich Low_complexity Low_complexity 2 98 0 2 1387 541 214 0 0 chr9 105177202 105177305 -18898867 - PB1D10 SINE Alu -13 104 2 2 1387 630 199 110 0 chr9 105178934 105179080 -18897092 - B3 SINE B2 -54 162 1 2 1387 402 261 36 22 chr9 105179700 105179837 -18896335 - RMER15 LTR ERVL -40 535 397 2 1387 450 0 0 0 chr9 105180253 105180303 -18895869 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1387 815 248 120 172 chr9 105180452 105180993 -18895179 - RMER13A LTR ERVK -39 821 309 2 1387 314 284 33 22 chr9 105181057 105181147 -18895025 + Lx8 LINE L1 7232 7322 -151 2 1387 23 33 0 0 chr9 105181219 105181249 -18894923 + AT_rich Low_complexity Low_complexity 1 30 0 2 1387 481 213 32 24 chr9 105182765 105182890 -18893282 - ID_B1 SINE B4 -1 223 98 2 1387 231 309 71 29 chr9 105182767 105182907 -18893265 - B1_Mur4 SINE Alu 0 150 5 2 1387 1227 135 37 5 chr9 105182925 105183141 -18893031 - MTC LTR MaLR 0 421 199 2 1387 362 129 23 23 chr9 105183144 105183231 -18892941 + CT-rich Low_complexity Low_complexity 4 90 0 2 1387 1272 126 5 5 chr9 105184440 105184648 -18891524 - MTC LTR MaLR -211 210 3 2 1387 405 0 0 0 chr9 105185113 105185158 -18891014 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1387 573 229 113 13 chr9 105186270 105186429 -18889743 - ORR1E LTR MaLR -124 235 61 2 1387 345 189 14 42 chr9 105186489 105186561 -18889611 - ORR1E LTR MaLR -289 70 1 2 1387 297 245 249 73 chr9 105186818 105187131 -18889041 + RLTR9A LTR ERVK 1 368 0 2 1387 492 138 277 0 chr9 105187131 105187259 -18888913 - URR1B DNA MER1_type -50 175 12 3 1387 326 325 51 19 chr9 105189005 105189162 -18887010 + LTR16B2 LTR ERVL 297 458 -4 3 1387 183 383 70 0 chr9 105189338 105189466 -18886706 - MIRb SINE MIR -16 252 116 3 1387 195 233 0 0 chr9 105190224 105190267 -18885905 + MIRc SINE MIR 89 131 -137 3 1387 478 306 59 59 chr9 105190565 105190689 -18885483 + ID_B1 SINE B4 6 123 -101 3 1387 1777 142 94 70 chr9 105190689 105190868 -18885304 - ORR1C2 LTR MaLR -4 380 189 3 1387 285 29 0 0 chr9 105190868 105190902 -18885270 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1387 1777 142 94 70 chr9 105190902 105191093 -18885079 - ORR1C2 LTR MaLR -196 188 3 3 1387 478 306 59 59 chr9 105191093 105191187 -18884985 + ID_B1 SINE B4 124 224 0 3 1387 190 0 32 32 chr9 105191275 105191306 -18884866 + (TTA)n Simple_repeat Simple_repeat 2 32 0 3 1387 771 279 72 14 chr9 105192120 105192327 -18883845 + B4A SINE B4 5 223 -69 3 1387 1072 238 90 85 chr9 105193431 105193808 -18882364 + MTEa LTR MaLR 1 379 0 3 1387 431 222 11 0 chr9 105194213 105194303 -18881869 + PB1D10 SINE Alu 1 91 -26 3 1387 195 42 0 0 chr9 105194305 105194329 -18881843 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 3 1387 245 242 124 21 chr9 105196584 105196681 -18879491 - L1MA6 LINE L1 -300 6000 5894 3 1387 409 309 21 14 chr9 105197057 105197198 -18878974 + MER63A DNA AcHobo 1 142 -68 3 1387 502 264 21 7 chr9 105197231 105197376 -18878796 + MTE2b LTR MaLR 233 379 0 3 1387 1403 63 14 0 chr9 105198395 105199093 -18877079 + (TAGA)n Simple_repeat Simple_repeat 1 708 0 3 1387 236 77 0 25 chr9 105200157 105200197 -18875975 + (TTA)n Simple_repeat Simple_repeat 1 39 0 3 1387 402 207 197 8 chr9 105201364 105201481 -18874691 + B3 SINE B2 3 141 -75 3 1387 270 0 0 0 chr9 105202878 105202908 -18873264 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1387 259 253 0 25 chr9 105202927 105203008 -18873164 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1387 234 0 0 0 chr9 105203545 105203571 -18872601 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1387 208 328 35 0 chr9 105203949 105204042 -18872130 - MIRc SINE MIR -59 149 57 3 1387 318 255 188 33 chr9 105204215 105204673 -18871499 + L1MEg LINE L1 1572 2100 -4142 3 1387 216 122 0 0 chr9 105205991 105206032 -18870140 + (CAAAAA)n Simple_repeat Simple_repeat 6 46 0 3 1387 217 307 68 0 chr9 105206098 105206186 -18869986 + RSINE1 SINE B4 1 94 -71 3 1387 227 299 160 24 chr9 105206244 105206450 -18869722 + L1MEg LINE L1 2286 2519 -3627 3 1387 444 322 24 66 chr9 105206544 105206812 -18869360 + L1MEg LINE L1 2662 2921 -3225 3 1387 855 182 0 0 chr9 105207087 105207230 -18868942 - B1_Mur4 SINE Alu -5 145 3 3 1387 1159 247 114 3 chr9 105207231 105207564 -18868608 + Lx8 LINE L1 6778 7147 -326 3 1387 312 27 0 0 chr9 105207700 105207737 -18868435 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1387 760 305 80 49 chr9 105207787 105208460 -18867712 + L1MEg LINE L1 3805 4498 -1648 3 1387 191 103 26 0 chr9 105208802 105208841 -18867331 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1387 239 276 110 20 chr9 105208873 105208973 -18867199 + L1MEg LINE L1 5389 5497 -665 3 1387 1391 130 92 0 chr9 105209100 105209361 -18866811 - ORR1B2 LTR MaLR -2 365 81 3 1387 414 0 0 0 chr9 105209647 105209693 -18866479 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1387 528 16 0 0 chr9 105210215 105210276 -18865896 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1387 27 0 0 0 chr9 105211255 105211282 -18864890 + GC_rich Low_complexity Low_complexity 1 27 0 3 1387 237 180 0 0 chr9 105211363 105211413 -18864759 + GA-rich Low_complexity Low_complexity 2 51 0 3 1387 207 100 0 0 chr9 105211648 105211678 -18864494 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1387 495 0 0 0 chr9 105212663 105212718 -18863454 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1387 527 78 13 0 chr9 105214369 105214446 -18861726 + (TAGG)n Simple_repeat Simple_repeat 2 79 0 3 1387 826 176 94 40 chr9 105216484 105216685 -18859487 + B3 SINE B2 1 212 -4 3 1387 474 18 0 0 chr9 105217180 105217235 -18858937 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1387 234 250 89 0 chr9 105217435 105217491 -18858681 - B1F SINE Alu -11 138 78 3 1387 505 250 103 56 chr9 105218437 105218632 -18857540 + L1MC1 LINE L1 5695 5898 -435 3 1387 249 295 30 23 chr9 105218686 105218818 -18857354 + RMER15 LTR ERVL 287 419 -156 3 1387 346 313 15 0 chr9 105219946 105220077 -18856095 + (CCCA)n Simple_repeat Simple_repeat 2 134 0 3 1387 225 309 130 0 chr9 105221233 105221356 -18854816 - MLT2B1 LTR ERVL -105 462 324 3 1387 341 302 117 0 chr9 105221377 105221539 -18854633 - MLT2B1 LTR ERVL -337 183 3 3 1387 288 220 102 0 chr9 105221737 105221796 -18854376 + ID4_ SINE ID 2 66 -17 3 1387 189 0 0 0 chr9 105221801 105221822 -18854350 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1387 1844 183 19 11 chr9 105222141 105222506 -18853666 - ORR1D1 LTR MaLR -6 368 1 3 1387 680 94 1 1 chr9 105223048 105223153 -18853019 + L1_Mm LINE L1 4298 4428 -1715 3 1387 3537 20 5 0 chr9 105223275 105223669 -18852503 - MTA_Mm LTR MaLR 0 396 1 3 1387 341 278 205 45 chr9 105223727 105223992 -18852180 + L1MA4 LINE L1 5668 5968 -323 3 1387 209 154 36 55 chr9 105224263 105224318 -18851854 + GA-rich Low_complexity Low_complexity 1 54 0 3 1387 207 0 0 0 chr9 105224965 105224988 -18851184 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1387 257 264 42 0 chr9 105224994 105225066 -18851106 + B4A SINE B4 2 76 -216 3 1387 596 226 262 35 chr9 105227771 105227973 -18848199 + RMER1C Other Other 1095 1342 0 3 1387 410 182 11 54 chr9 105227980 105228073 -18848099 + MTD LTR MaLR 223 311 -108 3 1387 1151 120 33 0 chr9 105228093 105228276 -18847896 - MT2C_Mm LTR ERVL -216 259 71 3 1387 1506 138 124 0 chr9 105228278 105228569 -18847603 - IAPEY3_LTR LTR ERVK -5 327 1 3 1387 2091 167 38 12 chr9 105228712 105229136 -18847036 - RMER6B LTR ERVK -26 435 1 3 1387 2888 33 0 0 chr9 105229765 105230099 -18846073 - L1Md_F2 LINE L1 -413 6169 5836 3 1387 3613 45 14 0 chr9 105230101 105230541 -18845631 + L1Md_F2 LINE L1 6137 6582 0 3 1387 200 200 0 43 chr9 105230674 105230721 -18845451 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 3 1387 27 73 0 0 chr9 105231512 105231567 -18844605 + AT_rich Low_complexity Low_complexity 1 55 0 3 1387 375 84 13 19 chr9 105231585 105231695 -18844477 + B2_Mm2 SINE B2 47 190 -5 3 1387 399 242 61 0 chr9 105232110 105232209 -18843963 - PB1D7 SINE Alu -12 108 4 3 1387 321 356 47 14 chr9 105232886 105233034 -18843138 + B4A SINE B4 3 155 -137 3 1387 4428 63 15 22 chr9 105233062 105233645 -18842527 - L1_Mus2 LINE L1 -3 6563 5985 3 1387 27 0 0 0 chr9 105234016 105234043 -18842129 + AT_rich Low_complexity Low_complexity 1 27 0 3 1387 449 227 16 91 chr9 105234119 105234240 -18841932 + PB1D10 SINE Alu 1 112 -5 3 1387 416 250 110 29 chr9 105234257 105234393 -18841779 + L1MC4a LINE L1 6892 7038 -844 3 1387 198 0 0 0 chr9 105234393 105234415 -18841757 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1387 324 0 0 0 chr9 105234425 105234461 -18841711 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1387 312 232 14 0 chr9 105234858 105234927 -18841245 + ID4_ SINE ID 3 72 -11 3 1387 2979 157 90 4 chr9 105235241 105235772 -18840400 - Lx LINE L1 -72 6582 6006 3 1387 318 289 28 19 chr9 105235950 105236056 -18840116 + MER5B DNA MER1_type 11 117 -61 3 1387 39311 8 0 1 chr9 105236076 105242057 -18834115 + L1Md_A LINE L1 1 5586 -297 3 1387 9172 2 1 0 chr9 105242057 105243052 -18833120 + L1Md_A LINE L1 5587 6582 0 3 1387 190 171 0 0 chr9 105243058 105243093 -18833079 + MER5B DNA MER1_type 131 165 -13 3 1387 296 301 30 50 chr9 105244072 105244171 -18832001 - PB1D10 SINE Alu -30 120 23 3 1387 534 287 146 27 chr9 105244266 105244294 -18831878 - B4 SINE B4 0 292 265 3 1387 4051 57 69 35 chr9 105244294 105244859 -18831313 - MT2B2 LTR ERVL 0 584 1 3 1387 534 287 146 27 chr9 105244859 105245091 -18831081 - B4 SINE B4 -28 264 2 3 1387 635 237 0 0 chr9 105245699 105245855 -18830317 - MER5A DNA MER1_type -2 187 32 3 1387 331 247 0 23 chr9 105246033 105246120 -18830052 - MTEb LTR MaLR -14 365 281 3 1387 27 49 0 0 chr9 105246571 105246612 -18829560 + AT_rich Low_complexity Low_complexity 1 41 0 3 1387 6152 40 0 1 chr9 105246867 105247599 -18828573 - L1_Mm LINE L1 -321 5562 4832 3 1387 255 0 0 0 chr9 105247597 105247625 -18828547 + L1_Mm LINE L1 5559 5586 -297 3 1387 8180 42 1 1 chr9 105247625 105248609 -18827563 + L1Md_F3 LINE L1 5587 6570 -14 3 1387 303 333 60 26 chr9 105248631 105248748 -18827424 + ID_B1 SINE B4 84 204 -20 3 1387 844 146 92 33 chr9 105249287 105249471 -18826701 - B2_Mm2 SINE B2 0 195 1 3 1387 182 191 21 0 chr9 105250486 105250533 -18825639 + GA-rich Low_complexity Low_complexity 2 49 0 3 1388 342 220 0 0 chr9 105250955 105251096 -18825076 + CT-rich Low_complexity Low_complexity 2 142 0 3 1388 389 314 96 11 chr9 105251647 105251834 -18824338 + Tigger13a DNA MER2_type 82 284 -487 3 1388 495 0 0 0 chr9 105252005 105252060 -18824112 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1388 505 234 163 103 chr9 105252474 105252707 -18823465 + B4A SINE B4 46 292 0 3 1388 180 284 0 0 chr9 105252829 105252896 -18823276 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1388 24 0 0 0 chr9 105253407 105253431 -18822741 + AT_rich Low_complexity Low_complexity 1 24 0 3 1388 2188 132 9 6 chr9 105255096 105255424 -18820748 - ORR1A4 LTR MaLR 0 329 1 3 1388 222 376 0 0 chr9 105256720 105256805 -18819367 - L2b LINE L2 -20 3355 3271 3 1388 288 186 163 0 chr9 105257197 105257283 -18818889 - Lx8 LINE L1 0 7473 7374 3 1388 1040 304 72 27 chr9 105257384 105257787 -18818385 - Lx8 LINE L1 -123 7350 6930 3 1388 330 271 110 14 chr9 105257965 105258111 -18818061 - LTR16C LTR ERVL -2 487 328 3 1388 331 291 289 6 chr9 105258355 105258514 -18817658 + RMER15 LTR ERVL 352 555 -20 3 1388 511 276 118 60 chr9 105258761 105259092 -18817080 - ORR1E LTR MaLR -2 357 8 3 1388 310 94 38 0 chr9 105259094 105259147 -18817025 + ORR1D1 LTR MaLR 1 55 -323 3 1388 647 144 34 17 chr9 105259160 105259337 -18816835 + CT-rich Low_complexity Low_complexity 1 180 0 3 1388 1088 190 9 24 chr9 105259359 105259569 -18816603 + ORR1D1 LTR MaLR 166 372 -2 3 1388 334 172 69 0 chr9 105259626 105259771 -18816401 + (TAGA)n Simple_repeat Simple_repeat 2 156 0 3 1388 845 167 12 0 chr9 105259770 105259938 -18816234 + GA-rich Low_complexity Low_complexity 3 172 0 4 1388 258 259 41 41 chr9 105259938 105260059 -18816113 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 4 1388 250 353 29 0 chr9 105261500 105261517 -18814655 + ID SINE ID 65 84 -140 4 1388 236 305 37 28 chr9 105261517 105261625 -18814547 + PB1D10 SINE Alu 1 109 -8 4 1388 301 266 0 25 chr9 105262156 105262237 -18813935 + ID4 SINE ID 1 79 -4 4 1388 366 80 0 0 chr9 105262238 105262288 -18813884 + (CCA)n Simple_repeat Simple_repeat 1 50 0 4 1388 618 288 7 13 chr9 105262511 105262666 -18813506 - B4A SINE B4 -1 291 138 4 1388 249 33 0 0 chr9 105262666 105262696 -18813476 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1388 732 279 87 13 chr9 105263391 105263700 -18812472 + L1MA5 LINE L1 5965 6296 -4 4 1388 888 266 14 0 chr9 105264322 105264529 -18811643 - B3 SINE B2 -4 212 3 4 1388 318 254 24 88 chr9 105264745 105264870 -18811302 + PB1D10 SINE Alu 1 117 0 4 1388 482 276 71 11 chr9 105265191 105265374 -18810798 - Lx9 LINE L1 -159 7485 7292 4 1388 476 322 7 7 chr9 105265428 105265572 -18810600 + ID_B1 SINE B4 79 222 -2 4 1388 312 335 68 12 chr9 105266014 105266177 -18809995 + L3 LINE CR1 3182 3353 -1136 4 1388 228 228 0 0 chr9 105266417 105266474 -18809698 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1388 363 44 0 0 chr9 105266477 105266522 -18809650 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1388 779 276 66 59 chr9 105266534 105266807 -18809365 - B4A SINE B4 -15 277 3 4 1388 486 0 0 0 chr9 105266815 105266869 -18809303 + (TAA)n Simple_repeat Simple_repeat 3 56 0 4 1388 1033 224 41 128 chr9 105267115 105267276 -18808896 + ORR1E LTR MaLR 24 185 -174 4 1388 207 0 0 0 chr9 105267276 105267299 -18808873 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 4 1388 2606 79 0 17 chr9 105267300 105267648 -18808524 - L1_Mus1 LINE L1 -10 6557 6216 4 1388 1033 224 41 128 chr9 105267648 105267852 -18808320 + ORR1E LTR MaLR 186 359 0 4 1388 507 17 0 0 chr9 105268074 105268134 -18808038 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1388 686 265 44 15 chr9 105268209 105268412 -18807760 - B3 SINE B2 -7 209 1 4 1388 236 301 52 15 chr9 105268445 105268580 -18807592 - L1ME1 LINE L1 -26 6153 6014 4 1388 2265 77 64 0 chr9 105269904 105270215 -18805957 + Lx2 LINE L1 6667 6997 0 4 1388 1835 48 0 9 chr9 105270348 105270580 -18805592 + L1_Mus1 LINE L1 6338 6567 0 4 1388 432 0 0 0 chr9 105270590 105270638 -18805534 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 4 1388 494 276 148 52 chr9 105270658 105270948 -18805224 + RMER5 LTR ERV1 217 534 0 4 1388 269 241 17 0 chr9 105271348 105271406 -18804766 + MER45C DNA Tip100 885 943 -10 4 1388 449 284 28 0 chr9 105271996 105272105 -18804067 + RSINE1 SINE B4 10 121 -44 4 1388 582 15 0 0 chr9 105272191 105272258 -18803914 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1388 343 257 57 0 chr9 105272316 105272421 -18803751 - L1MA10 LINE L1 -3 6331 6221 4 1388 456 308 7 0 chr9 105272442 105272585 -18803587 + RSINE1 SINE B4 8 151 -14 4 1388 469 290 21 93 chr9 105272798 105273087 -18803085 + Lx8 LINE L1 7206 7473 0 4 1388 477 0 0 0 chr9 105273283 105273336 -18802836 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1388 180 0 0 0 chr9 105273638 105273658 -18802514 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1388 453 238 131 0 chr9 105275362 105275484 -18800688 + RSINE1 SINE B4 7 144 -21 4 1388 270 0 0 0 chr9 105275565 105275595 -18800577 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1388 695 44 11 0 chr9 105276004 105276095 -18800077 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1388 821 258 106 43 chr9 105276095 105276350 -18799822 - B4A SINE B4 -21 271 1 4 1388 577 203 62 8 chr9 105276422 105276551 -18799621 - RSINE1 SINE B4 -28 137 2 4 1388 423 286 112 14 chr9 105276582 105276805 -18799367 - MamRep4096 DNA hAT? -96 330 86 4 1388 2277 144 40 110 chr9 105276817 105277180 -18798992 - RLTR21 LTR ERVK 0 1572 1230 4 1388 315 0 0 0 chr9 105277180 105277215 -18798957 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1388 2277 144 40 110 chr9 105277215 105277291 -18798881 - RLTR21 LTR ERVK -343 1229 1147 4 1388 312 70 0 0 chr9 105277291 105277334 -18798838 + (CATA)n Simple_repeat Simple_repeat 4 46 0 4 1388 2277 144 40 110 chr9 105277334 105277440 -18798732 - RLTR21 LTR ERVK -426 1146 1066 4 1388 339 85 0 0 chr9 105277509 105277556 -18798616 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1388 4684 151 38 52 chr9 105277576 105277665 -18798507 - RLTR21 LTR ERVK -318 1254 1182 4 1388 285 98 0 0 chr9 105277665 105277706 -18798466 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1388 6642 153 34 42 chr9 105277706 105277763 -18798409 - RLTR21 LTR ERVK -391 1181 1130 4 1388 258 32 0 0 chr9 105277763 105277794 -18798378 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1388 6642 153 34 42 chr9 105277794 105278910 -18797262 - RLTR21 LTR ERVK -443 1129 1 4 1388 333 288 60 74 chr9 105280259 105280544 -18795628 + L1MC4a LINE L1 5665 5945 -1937 4 1388 214 271 207 23 chr9 105280637 105280724 -18795448 - PB1D10 SINE Alu 0 117 15 4 1388 223 130 37 0 chr9 105280724 105280778 -18795394 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1388 248 182 26 0 chr9 105280796 105280873 -18795299 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 4 1388 238 239 14 27 chr9 105280979 105281052 -18795120 - B4A SINE B4 -220 72 1 4 1388 302 0 0 26 chr9 105281137 105281176 -18794996 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 4 1388 23 0 0 0 chr9 105281224 105281247 -18794925 + AT_rich Low_complexity Low_complexity 1 23 0 4 1388 488 342 63 39 chr9 105281405 105281788 -18794384 + Lx8 LINE L1 7066 7457 -16 4 1388 238 337 0 0 chr9 105282566 105282649 -18793523 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 1388 237 132 0 0 chr9 105282905 105282943 -18793229 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1388 947 258 88 0 chr9 105282957 105283217 -18792955 - B4A SINE B4 -6 286 4 4 1388 25 51 0 0 chr9 105283985 105284024 -18792148 + AT_rich Low_complexity Low_complexity 1 39 0 4 1388 24 0 0 0 chr9 105284177 105284201 -18791971 + AT_rich Low_complexity Low_complexity 1 24 0 4 1388 463 304 11 80 chr9 105284215 105284328 -18791844 - B4 SINE B4 -129 163 58 4 1388 1481 74 11 5 chr9 105284328 105284518 -18791654 - B2_Mm1t SINE B2 -2 191 1 4 1388 463 304 11 80 chr9 105284518 105284579 -18791593 - B4 SINE B4 -235 57 1 4 1388 997 115 73 22 chr9 105284710 105284942 -18791230 - RMER17C LTR ERVK -166 244 1 4 1388 2470 43 0 0 chr9 105285937 105286219 -18789953 - L1Md_A LINE L1 0 6582 6301 4 1388 889 267 96 55 chr9 105286231 105286780 -18789392 - Lx7 LINE L1 -1596 6100 5501 4 1388 1489 269 60 5 chr9 105286854 105287302 -18788870 + Lx8 LINE L1 6197 6669 -804 4 1388 1376 256 109 76 chr9 105287329 105287997 -18788175 + Lx8 LINE L1 6782 7471 -2 4 1388 250 243 33 116 chr9 105287897 105288018 -18788154 + RMER1C Other Other 1232 1342 0 4 1388 1046 197 21 5 chr9 105288556 105288745 -18787427 - B3 SINE B2 -22 194 3 4 1388 256 232 0 35 chr9 105288955 105289013 -18787159 + MER5A DNA MER1_type 66 121 -68 4 1388 345 100 0 0 chr9 105289016 105289066 -18787106 + (GGA)n Simple_repeat Simple_repeat 1 50 0 4 1388 1639 268 112 11 chr9 105290585 105291404 -18784768 + L1MA6 LINE L1 5341 6285 -12 4 1388 1181 283 49 14 chr9 105292406 105292771 -18783401 + MTEa LTR MaLR 2 379 0 4 1388 1078 78 42 14 chr9 105292966 105293110 -18783062 - B1_Mus1 SINE Alu 0 148 1 4 1388 630 135 0 0 chr9 105293331 105293435 -18782737 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 1388 498 333 11 11 chr9 105293454 105293642 -18782530 - B4 SINE B4 -62 230 43 4 1388 1002 59 13 106 chr9 105293813 105293964 -18782208 - B1_Mm SINE Alu -10 137 1 4 1388 3335 101 21 37 chr9 105294149 105294632 -18781540 + MT2C_Mm LTR ERVL 1 475 0 4 1388 1291 54 0 0 chr9 105294811 105294959 -18781213 - B1_Mus1 SINE Alu 0 148 1 4 1388 375 23 0 0 chr9 105295579 105295623 -18780549 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1388 303 93 0 0 chr9 105295623 105295665 -18780507 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1388 186 250 106 30 chr9 105297036 105297102 -18779070 + L2b LINE L2 3304 3374 -1 4 1388 423 256 37 44 chr9 105298272 105298407 -18777765 - MER96B DNA hAT -112 305 172 4 1388 811 226 44 6 chr9 105298653 105298835 -18777337 - MT2A LTR ERVL -342 191 3 4 1388 757 182 75 12 chr9 105300648 105300809 -18775363 - MT2A LTR ERVL -320 213 43 4 1388 295 248 108 10 chr9 105301034 105301136 -18775036 + LTR87 LTR ERVL? 1 112 -512 4 1388 470 243 14 81 chr9 105301187 105301335 -18774837 + MER20 DNA MER1_type 56 193 -26 4 1388 468 215 112 41 chr9 105301421 105301591 -18774581 + L1MB7 LINE L1 6003 6184 0 4 1388 379 282 146 61 chr9 105301686 105302074 -18774098 - L1M5 LINE L1 -497 5743 5321 4 1388 341 204 63 21 chr9 105302142 105302237 -18773935 - L1M5 LINE L1 -989 5157 5059 4 1388 241 226 112 51 chr9 105302775 105302873 -18773299 - MIR SINE MIR -63 145 42 4 1388 184 143 57 0 chr9 105303558 105303593 -18772579 + MER5A DNA MER1_type 66 102 -87 4 1388 322 302 169 42 chr9 105304613 105304779 -18771393 - MER3 DNA MER1_type -8 201 15 4 1388 446 225 12 0 chr9 105306568 105306648 -18769524 - ID4_ SINE ID 0 83 3 4 1388 504 281 54 7 chr9 105307813 105307960 -18768212 - RSINE1 SINE B4 0 165 12 4 1388 405 176 54 0 chr9 105308436 105308510 -18767662 - ID4 SINE ID -2 81 4 4 1388 251 364 18 0 chr9 105308616 105308726 -18767446 + PB1D10 SINE Alu 5 116 -1 4 1388 404 175 246 79 chr9 105308984 105309154 -18767018 + RLTR11B LTR ERVK 1 198 -255 4 1388 24 0 0 0 chr9 105309290 105309314 -18766858 + AT_rich Low_complexity Low_complexity 1 24 0 4 1388 565 324 65 46 chr9 105310407 105310669 -18765503 + B4A SINE B4 3 269 -23 4 1388 519 276 167 36 chr9 105310682 105310874 -18765298 + B4 SINE B4 69 285 -7 4 1388 405 0 0 0 chr9 105311622 105311667 -18764505 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 5 1388 228 35 0 0 chr9 105311707 105311736 -18764436 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1388 517 227 154 14 chr9 105311932 105312075 -18764097 - RSINE1 SINE B4 0 165 3 5 1388 30 27 0 0 chr9 105312778 105312815 -18763357 + AT_rich Low_complexity Low_complexity 1 37 0 5 1388 30 0 0 0 chr9 105315015 105315045 -18761127 + AT_rich Low_complexity Low_complexity 1 30 0 5 1388 275 338 68 0 chr9 105315660 105315793 -18760379 + RSINE1 SINE B4 9 150 -15 5 1388 342 0 0 0 chr9 105315799 105315837 -18760335 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1388 187 254 143 43 chr9 105315991 105316061 -18760111 + L4 LINE RTE 198 274 -1755 5 1388 406 341 82 21 chr9 105317423 105317702 -18758470 + Lx8 LINE L1 7117 7412 -61 5 1388 204 67 0 0 chr9 105317716 105317746 -18758426 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1388 450 169 49 134 chr9 105317782 105317946 -18758226 + Lx9 LINE L1 7480 7629 -15 5 1388 308 300 91 0 chr9 105317976 105318086 -18758086 + B4A SINE B4 57 176 -116 5 1388 201 200 0 24 chr9 105318105 105318146 -18758026 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1388 432 319 28 21 chr9 105318173 105318322 -18757850 + PB1D10 SINE Alu 8 149 0 5 1388 1493 165 165 18 chr9 105318377 105318710 -18757462 + ORR1C2 LTR MaLR 1 382 -2 5 1388 5886 43 25 0 chr9 105318720 105319435 -18756737 + L1Md_F2 LINE L1 5832 6559 -23 5 1388 1278 27 0 26 chr9 105320116 105320267 -18755905 + B1_Mus1 SINE Alu 2 148 0 5 1388 180 97 0 0 chr9 105320267 105320298 -18755874 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1388 243 241 0 17 chr9 105321218 105321277 -18754895 + GA-rich Low_complexity Low_complexity 2 59 0 5 1388 1404 200 107 52 chr9 105321626 105322239 -18753933 + RLTR40 LTR ERVK 104 817 0 5 1388 918 259 82 4 chr9 105322703 105322971 -18753201 + B4A SINE B4 1 289 -3 5 1388 294 278 195 25 chr9 105323126 105323244 -18752928 - B1F SINE Alu -1 148 11 5 1388 207 0 0 0 chr9 105323268 105323291 -18752881 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1388 228 290 95 21 chr9 105323347 105323442 -18752730 - PB1D10 SINE Alu -11 106 5 5 1388 375 341 101 5 chr9 105323612 105323821 -18752351 - MER2 DNA MER2_type 0 345 117 5 1388 501 294 56 11 chr9 105324199 105324378 -18751794 + B3A SINE B2 2 188 -10 5 1388 358 311 129 45 chr9 105325670 105325872 -18750300 + MER20 DNA MER1_type 1 219 0 5 1388 206 309 78 58 chr9 105327435 105327538 -18748634 + L2 LINE L2 1411 1515 -1904 5 1388 240 351 65 33 chr9 105328216 105328369 -18747803 + RLTR14 LTR ERV1 225 382 0 5 1388 431 275 0 21 chr9 105329045 105329186 -18746986 + L1MC2 LINE L1 5825 5962 -382 5 1388 29 70 0 0 chr9 105329775 105329832 -18746340 + AT_rich Low_complexity Low_complexity 1 57 0 5 1388 470 247 130 41 chr9 105330333 105330603 -18745569 + L1MD LINE L1 4876 5169 -977 5 1388 1253 48 0 0 chr9 105330849 105330995 -18745177 + B1_Mus2 SINE Alu 2 147 0 5 1388 8127 46 3 14 chr9 105331029 105332052 -18744120 + L1_Mus1 LINE L1 5545 6567 0 5 1388 543 280 111 77 chr9 105332071 105332099 -18744073 + L1ME1 LINE L1 5614 5637 -542 5 1388 3728 163 112 96 chr9 105332099 105332983 -18743189 - RMER19B LTR ERVK -4 898 1 5 1388 543 280 111 77 chr9 105332983 105333484 -18742688 + L1ME1 LINE L1 5638 6161 -18 5 1388 336 48 0 0 chr9 105333968 105334010 -18742162 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1388 747 273 72 105 chr9 105336378 105336710 -18739462 + ORR1E LTR MaLR 4 324 -35 5 1388 261 0 0 0 chr9 105337573 105337602 -18738570 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1388 449 199 78 35 chr9 105339289 105339430 -18736742 - B1_Mur2 SINE Alu -1 148 2 5 1388 318 87 0 0 chr9 105340210 105340256 -18735916 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 5 1388 797 137 229 0 chr9 105340726 105340909 -18735263 - URR1A DNA MER1_type -1 225 1 5 1388 541 175 87 0 chr9 105340963 105341066 -18735106 + RMER6B LTR ERVK 1 112 -349 5 1388 806 205 92 56 chr9 105341062 105341258 -18734914 + RMER6B LTR ERVK 245 447 -14 5 1388 271 263 5 43 chr9 105341359 105341467 -18734705 - B1F SINE Alu -11 138 62 5 1388 210 268 0 35 chr9 105341440 105341498 -18734674 - B1F SINE Alu -29 120 65 5 1388 244 281 0 45 chr9 105341497 105341564 -18734608 - B1F SINE Alu -24 125 62 5 1388 338 246 6 169 chr9 105341534 105341658 -18734514 - B1F SINE Alu -29 120 16 5 1388 2984 67 20 5 chr9 105341941 105342331 -18733841 - MTA_Mm LTR MaLR 0 396 1 5 1388 2471 175 61 57 chr9 105342603 105343024 -18733148 + RMER15 LTR ERVL 1 424 -151 5 1388 1156 61 0 26 chr9 105343024 105343175 -18732997 - B1_Mus2 SINE Alu 0 147 1 5 1388 2471 175 61 57 chr9 105343175 105343297 -18732875 + RMER15 LTR ERVL 425 546 -29 5 1388 184 364 114 0 chr9 105346340 105346428 -18729744 - L2c LINE L2 -18 3369 3272 5 1388 333 291 194 14 chr9 105348786 105349002 -18727170 - Looper DNA PiggyBac 0 1558 1304 5 1388 239 330 165 0 chr9 105349113 105349210 -18726962 - PB1D10 SINE Alu 0 117 5 5 1388 1223 261 202 47 chr9 105349219 105350094 -18726078 - Looper DNA PiggyBac -360 1198 188 5 1388 411 21 0 0 chr9 105351504 105351552 -18724620 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1388 252 86 0 0 chr9 105351552 105351586 -18724586 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 5 1388 28 0 0 0 chr9 105351991 105352019 -18724153 + AT_rich Low_complexity Low_complexity 1 28 0 5 1388 1979 256 95 20 chr9 105352314 105352964 -18723208 - Lx8 LINE L1 -116 7357 6659 5 1388 458 326 58 0 chr9 105352985 105353123 -18723049 + ID_B1 SINE B4 79 224 0 5 1388 260 207 26 8 chr9 105353572 105353689 -18722483 + GA-rich Low_complexity Low_complexity 2 120 0 5 1388 275 262 203 8 chr9 105353937 105354060 -18722112 + RSINE1 SINE B4 5 151 -14 5 1388 198 0 0 0 chr9 105354660 105354682 -18721490 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1388 21 0 0 0 chr9 105355587 105355608 -18720564 + AT_rich Low_complexity Low_complexity 1 21 0 5 1388 512 289 13 26 chr9 105355623 105355779 -18720393 + RSINE1 SINE B4 12 165 0 5 1388 25 31 0 0 chr9 105355801 105355833 -18720339 + AT_rich Low_complexity Low_complexity 1 32 0 5 1388 582 235 22 56 chr9 105356571 105356751 -18719421 + B4 SINE B4 118 291 -1 5 1388 22 0 0 0 chr9 105356885 105356907 -18719265 + AT_rich Low_complexity Low_complexity 1 22 0 5 1388 705 306 44 0 chr9 105356979 105357162 -18719010 + B3 SINE B2 1 191 -25 5 1388 244 250 0 62 chr9 105357361 105357425 -18718747 + ID4 SINE ID 1 60 -23 5 1388 971 241 23 33 chr9 105357597 105357811 -18718361 + B3 SINE B2 1 212 -4 5 1388 473 273 62 6 chr9 105358570 105358732 -18717440 + L1M4c LINE L1 1227 1397 -4987 5 1388 1176 76 0 0 chr9 105358769 105358926 -18717246 + B2_Mm2 SINE B2 1 157 -38 5 1388 368 20 20 0 chr9 105358926 105358975 -18717197 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 5 1388 321 286 17 11 chr9 105359104 105359220 -18716952 + B3A SINE B2 2 122 -73 5 1388 254 250 19 0 chr9 105359214 105359264 -18716908 - B4A SINE B4 -59 233 183 5 1388 707 289 31 76 chr9 105359264 105359339 -18716833 + MTE2b LTR MaLR 1 76 -303 5 1388 792 153 234 5 chr9 105359339 105359523 -18716649 + URR1A DNA MER1_type 1 226 0 5 1388 707 289 31 76 chr9 105359523 105359672 -18716500 + MTE2b LTR MaLR 77 215 -164 5 1388 609 141 0 0 chr9 105359742 105359834 -18716338 - MERVL-int LTR ERVL -548 4937 4846 5 1388 799 248 72 94 chr9 105359859 105360318 -18715854 + MT2A LTR ERVL 1 425 -108 5 1388 506 239 52 15 chr9 105360329 105360465 -18715707 - B3 SINE B2 -74 142 2 5 1388 966 193 72 0 chr9 105360465 105360686 -18715486 + RCHARR1 DNA MER1_type 727 963 -11 5 1388 232 232 52 21 chr9 105361023 105361120 -18715052 + L1MB8 LINE L1 6070 6169 -9 5 1388 397 260 113 45 chr9 105361415 105361592 -18714580 + MER47B DNA MER2_type 56 244 -174 5 1388 553 272 21 75 chr9 105362195 105362382 -18713790 + B3A SINE B2 8 184 -14 5 1388 412 335 47 76 chr9 105362414 105362442 -18713730 + B4 SINE B4 58 80 -212 5 1388 726 257 21 0 chr9 105362442 105362586 -18713586 + B1_Mur1 SINE Alu 2 148 -1 5 1388 414 0 0 0 chr9 105363204 105363250 -18712922 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1388 2263 148 35 32 chr9 105364669 105365102 -18711070 - RMER4A LTR ERVK 0 466 33 5 1388 736 282 67 48 chr9 105365115 105365428 -18710744 + ORR1E LTR MaLR 36 354 -5 5 1388 307 193 70 0 chr9 105366255 105366312 -18709860 - PB1D10 SINE Alu -28 89 29 5 1388 748 293 121 45 chr9 105367524 105367970 -18708202 - Charlie1a DNA MER1_type -370 1085 606 5 1388 250 246 169 31 chr9 105368001 105368131 -18708041 - Charlie1a DNA MER1_type -1023 432 285 5 1388 489 161 0 108 chr9 105368131 105368270 -18707902 - Lx4B LINE L1 -21 7037 6914 5 1388 453 244 123 18 chr9 105368451 105368614 -18707558 - Charlie1a DNA MER1_type -1227 228 49 5 1388 287 290 56 9 chr9 105368692 105368800 -18707372 + PB1 SINE Alu 15 127 0 5 1388 848 224 93 0 chr9 105370249 105370432 -18705740 - B3 SINE B2 -16 200 1 5 1388 253 293 0 0 chr9 105370487 105370554 -18705618 + L1ME2 LINE L1 5997 6063 -116 5 1388 445 291 18 18 chr9 105370554 105370666 -18705506 + B1F SINE Alu 4 115 -34 5 1388 525 311 89 78 chr9 105370724 105371149 -18705023 + Lx8 LINE L1 6755 7184 -289 5 1388 288 333 0 71 chr9 105373880 105373964 -18702208 + ID4_ SINE ID 5 82 -1 5 1388 536 290 87 74 chr9 105375283 105375525 -18700647 + RMER5 LTR ERV1 26 270 -264 5 1388 230 212 74 105 chr9 105375561 105375656 -18700516 + L1M5 LINE L1 5414 5505 -674 5 1388 231 235 114 34 chr9 105376460 105376548 -18699624 + MLT1A LTR MaLR 1 95 -279 5 1388 310 323 29 29 chr9 105376650 105376787 -18699385 + MLT1A LTR MaLR 236 372 -2 5 1388 219 259 0 18 chr9 105376825 105376880 -18699292 + MER5B DNA MER1_type 125 178 0 6 1388 314 343 98 0 chr9 105377625 105377768 -18698404 - MER5A DNA MER1_type -30 159 3 6 1388 191 277 84 0 chr9 105377824 105377907 -18698265 + MIRb SINE MIR 81 170 -98 6 1388 291 311 136 41 chr9 105378170 105378465 -18697707 - Tigger10 DNA Tigger -887 956 634 6 1388 246 250 90 38 chr9 105378883 105379016 -18697156 + L1MC5 LINE L1 7345 7484 -477 6 1388 296 271 119 13 chr9 105379291 105379555 -18696617 + MLT1B LTR MaLR 22 334 -56 6 1388 349 288 39 46 chr9 105379578 105379731 -18696441 - L1MC4a LINE L1 -632 7410 7259 6 1388 464 292 29 29 chr9 105379925 105380098 -18696074 - L1MC4a LINE L1 -949 6933 6761 6 1388 263 229 82 0 chr9 105380601 105380662 -18695510 - RSINE1 SINE B4 -14 151 86 6 1388 315 269 194 23 chr9 105380697 105380872 -18695300 - L1MC4a LINE L1 -2424 5458 5254 6 1388 207 0 0 0 chr9 105381198 105381221 -18694951 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 6 1388 320 251 150 21 chr9 105381299 105381486 -18694686 + L1ME1 LINE L1 5697 5907 -272 6 1389 322 164 75 0 chr9 105382098 105382165 -18694007 + L1M3 LINE L1 2958 3029 -3111 6 1389 576 0 0 0 chr9 105382167 105382231 -18693941 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1389 187 133 22 22 chr9 105382306 105382352 -18693820 + GA-rich Low_complexity Low_complexity 5 50 0 6 1389 355 241 105 16 chr9 105382448 105382638 -18693534 + L1M3 LINE L1 3193 3399 -2741 6 1389 256 251 203 21 chr9 105382647 105382834 -18693338 + L1M3 LINE L1 4811 5031 -1109 6 1389 264 234 31 15 chr9 105383851 105383916 -18692256 + ID4 SINE ID 16 81 -2 6 1389 28 48 0 0 chr9 105384146 105384188 -18691984 + AT_rich Low_complexity Low_complexity 1 42 0 6 1389 231 139 0 26 chr9 105384711 105384759 -18691413 - PB1 SINE Alu -9 118 61 6 1389 979 208 18 23 chr9 105385230 105385447 -18690725 + B3 SINE B2 1 216 0 6 1389 475 288 135 20 chr9 105385521 105385868 -18690304 + L1MB7 LINE L1 4583 4969 -1177 6 1389 252 141 0 59 chr9 105386102 105386170 -18690002 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 6 1389 1514 257 120 12 chr9 105386276 105386955 -18689217 + L1MB7 LINE L1 5385 6155 -29 6 1389 384 287 90 37 chr9 105387364 105387552 -18688620 + L1MC4a LINE L1 6159 6356 -1526 6 1389 414 294 7 34 chr9 105387579 105387727 -18688445 + RSINE1 SINE B4 3 146 -19 6 1389 305 311 58 58 chr9 105388417 105388622 -18687550 + L1MC4a LINE L1 6720 6924 -958 6 1389 370 120 107 107 chr9 105388765 105388868 -18687304 + B2_Mm2 SINE B2 60 162 -33 6 1389 183 42 0 0 chr9 105388868 105388892 -18687280 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 1389 325 213 67 22 chr9 105389119 105389218 -18686954 + L1MC4a LINE L1 7280 7389 -653 6 1389 256 240 48 32 chr9 105389247 105389372 -18686800 + L1MC4a LINE L1 7608 7734 -261 6 1389 261 295 37 37 chr9 105389401 105389563 -18686609 + L1MC4a LINE L1 7717 7878 -4 6 1389 500 280 40 0 chr9 105390277 105390427 -18685745 - MER20 DNA MER1_type -56 163 8 6 1389 722 176 0 58 chr9 105392108 105392247 -18683925 - B1_Mur4 SINE Alu -13 137 7 6 1389 787 273 44 51 chr9 105392506 105392799 -18683373 + B4A SINE B4 2 292 0 6 1389 607 274 45 7 chr9 105392866 105393020 -18683152 + RSINE1 SINE B4 6 165 0 6 1389 207 114 0 0 chr9 105393023 105393058 -18683114 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1389 25 0 0 0 chr9 105393725 105393750 -18682422 + AT_rich Low_complexity Low_complexity 1 25 0 6 1389 248 286 0 0 chr9 105394536 105394592 -18681580 - MIR SINE MIR -2 260 205 6 1389 216 196 0 0 chr9 105396220 105396266 -18679906 + T-rich Low_complexity Low_complexity 1 46 0 6 1389 220 197 14 43 chr9 105397410 105397479 -18678693 + (CCCCG)n Simple_repeat Simple_repeat 2 68 0 6 1389 212 225 178 27 chr9 105398614 105398687 -18677485 + B1F SINE Alu 2 85 -64 6 1389 1268 239 124 19 chr9 105398942 105399321 -18676851 + MTD LTR MaLR 1 419 0 6 1389 908 262 93 19 chr9 105400513 105400781 -18675391 - B4 SINE B4 0 292 5 6 1389 3797 91 45 15 chr9 105401369 105401431 -18674741 + Lx3B LINE L1 6204 6266 -707 6 1389 7101 61 24 9 chr9 105401431 105402346 -18673826 + RLTR13B3 LTR ERVK 1 929 0 6 1389 3797 91 45 15 chr9 105402346 105402821 -18673351 + Lx3B LINE L1 6267 6757 -216 6 1389 2917 124 47 4 chr9 105402869 105403355 -18672817 + MT2B2 LTR ERVL 76 582 -2 6 1389 650 91 10 0 chr9 105403411 105403510 -18672662 + (TA)n Simple_repeat Simple_repeat 1 100 0 6 1389 287 208 38 38 chr9 105403543 105403623 -18672549 - ID4_ SINE ID -2 81 2 6 1389 3354 100 70 47 chr9 105403777 105404331 -18671841 - Lx3B LINE L1 0 6973 6407 6 1389 511 108 0 0 chr9 105404331 105404405 -18671767 - MT2B LTR ERVL -526 75 2 6 1389 272 48 24 0 chr9 105405647 105405689 -18670483 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1389 32 20 0 20 chr9 105405735 105405755 -18670417 + AT_rich Low_complexity Low_complexity 1 20 0 6 1389 1236 54 0 0 chr9 105405755 105405902 -18670270 + B1_Mus2 SINE Alu 1 147 0 6 1389 32 20 0 20 chr9 105405902 105405931 -18670241 + AT_rich Low_complexity Low_complexity 1 29 0 6 1389 452 320 14 0 chr9 105406221 105406368 -18669804 + MER5A DNA MER1_type 15 163 -26 6 1389 213 39 0 0 chr9 105407069 105407095 -18669077 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 6 1389 300 254 0 29 chr9 105407349 105407418 -18668754 - tRNA-Ala-GCA tRNA tRNA -8 67 1 6 1389 660 209 7 7 chr9 105408828 105408963 -18667209 + MER5A DNA MER1_type 43 177 -12 6 1389 648 0 0 0 chr9 105409251 105409323 -18666849 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1389 26 0 0 0 chr9 105409541 105409567 -18666605 + AT_rich Low_complexity Low_complexity 1 26 0 6 1389 858 210 87 58 chr9 105409654 105409861 -18666311 - B3 SINE B2 -3 213 1 6 1389 1278 19 0 0 chr9 105409887 105410044 -18666128 + B2_Mm1a SINE B2 2 158 -35 6 1389 216 0 0 0 chr9 105410044 105410068 -18666104 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 6 1389 556 195 9 26 chr9 105410076 105410192 -18665980 + B3 SINE B2 2 115 -101 6 1389 275 211 70 0 chr9 105410273 105410330 -18665842 + B3A SINE B2 100 160 -38 6 1389 321 68 0 0 chr9 105410339 105410383 -18665789 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1389 477 0 0 0 chr9 105410383 105410435 -18665737 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1389 575 292 171 29 chr9 105411479 105411754 -18664418 + Arthur1 DNA Tip100 241 554 -3393 6 1389 2196 170 81 5 chr9 105411809 105412240 -18663932 + RMER4A LTR ERVK 3 466 0 6 1389 395 220 90 39 chr9 105412268 105412424 -18663748 + Arthur1 DNA Tip100 3648 3811 -136 6 1389 652 292 83 31 chr9 105412471 105412852 -18663320 + MLT2B1 LTR ERVL 3 498 -64 6 1389 498 191 482 0 chr9 105412935 105413076 -18663096 - B3 SINE B2 -6 210 2 6 1389 304 335 88 18 chr9 105413211 105413381 -18662791 + MIRb SINE MIR 52 233 -35 6 1389 21 36 0 0 chr9 105414043 105414071 -18662101 + AT_rich Low_complexity Low_complexity 1 28 0 6 1389 513 162 0 0 chr9 105416060 105416171 -18660001 + (CA)n Simple_repeat Simple_repeat 2 112 0 6 1389 219 288 0 0 chr9 105416190 105416249 -18659923 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1389 242 75 50 0 chr9 105416253 105416293 -18659879 + (CATG)n Simple_repeat Simple_repeat 1 42 0 6 1389 425 247 65 0 chr9 105416425 105416518 -18659654 - RSINE1 SINE B4 -65 100 2 6 1389 389 186 0 0 chr9 105416890 105416960 -18659212 + ID4 SINE ID 3 72 -11 6 1389 813 30 0 0 chr9 105417339 105417439 -18658733 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 6 1389 1216 43 0 0 chr9 105417441 105417582 -18658590 - B1_Mus2 SINE Alu -6 141 1 6 1389 654 292 123 20 chr9 105418091 105418440 -18657732 + MT2A LTR ERVL 135 519 -14 6 1389 335 345 137 4 chr9 105418472 105418728 -18657444 - L2 LINE L2 -833 2586 2297 6 1389 289 235 73 0 chr9 105420138 105420206 -18655966 - ID4_ SINE ID -9 74 2 6 1389 823 167 29 0 chr9 105420258 105420396 -18655776 + B1_Mur4 SINE Alu 2 143 -7 6 1389 407 190 33 18 chr9 105420469 105420578 -18655594 - PB1D10 SINE Alu -1 116 18 6 1389 22 0 0 0 chr9 105420741 105420763 -18655409 + AT_rich Low_complexity Low_complexity 1 22 0 6 1389 250 294 53 44 chr9 105421377 105421491 -18654681 + PB1D10 SINE Alu 3 117 0 6 1389 619 260 86 39 chr9 105421500 105421756 -18654416 + B4A SINE B4 5 272 -20 6 1389 228 253 13 39 chr9 105421778 105421856 -18654316 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1389 24 0 0 0 chr9 105421858 105421882 -18654290 + AT_rich Low_complexity Low_complexity 1 24 0 6 1389 192 111 0 0 chr9 105422295 105422331 -18653841 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1389 612 0 0 0 chr9 105423893 105423961 -18652211 + (TTTC)n Simple_repeat Simple_repeat 4 71 0 6 1389 617 253 94 10 chr9 105424198 105424390 -18651782 - Lx6 LINE L1 -234 7226 7019 6 1389 249 57 0 0 chr9 105424423 105424458 -18651714 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1389 228 182 0 0 chr9 105424919 105424963 -18651209 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1389 285 29 0 0 chr9 105424963 105424997 -18651175 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1389 649 293 78 24 chr9 105425037 105425292 -18650880 - B4A SINE B4 -23 269 1 6 1389 210 162 27 0 chr9 105426138 105426175 -18649997 + GA-rich Low_complexity Low_complexity 5 42 0 6 1389 279 231 37 37 chr9 105426770 105426851 -18649321 - ID4 SINE ID -1 82 2 6 1389 352 279 90 0 chr9 105426862 105426973 -18649199 - PB1 SINE Alu -3 124 4 6 1389 189 0 0 0 chr9 105427480 105427501 -18648671 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1389 1016 151 172 0 chr9 105428464 105428656 -18647516 + URR1B DNA MER1_type 1 225 0 6 1389 255 259 141 78 chr9 105428665 105428807 -18647365 - MER5A DNA MER1_type -10 179 29 6 1389 375 203 18 16 chr9 105430236 105430346 -18645826 + PB1D7 SINE Alu 22 120 0 6 1389 595 200 25 108 chr9 105430352 105430509 -18645663 + B3 SINE B2 2 145 -71 6 1389 1963 136 93 3 chr9 105430528 105430882 -18645290 + ORR1B1 LTR MaLR 1 386 -8 6 1389 231 36 0 0 chr9 105430907 105430935 -18645237 + (TAA)n Simple_repeat Simple_repeat 2 29 0 6 1389 455 290 28 42 chr9 105430998 105431142 -18645030 + MER5A1 DNA MER1_type 1 142 -24 6 1389 239 333 0 0 chr9 105431985 105432057 -18644115 + PB1D10 SINE Alu 14 85 -32 6 1389 1083 283 65 16 chr9 105432176 105432560 -18643612 + MER31B LTR ERV1 47 449 -17 7 1389 344 259 12 0 chr9 105432568 105432649 -18643523 - ID4_ SINE ID 0 83 2 7 1389 234 343 55 9 chr9 105432763 105432872 -18643300 - MER5A1 DNA MER1_type -51 115 2 7 1389 432 37 0 0 chr9 105433123 105433177 -18642995 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1389 706 167 15 60 chr9 105433190 105433324 -18642848 - B3A SINE B2 -55 143 16 7 1389 1018 136 233 20 chr9 105433554 105433756 -18642416 + Lx4B LINE L1 6802 7046 -12 7 1389 400 231 29 9 chr9 105434098 105434203 -18641969 + PB1D7 SINE Alu 4 110 -10 7 1389 659 246 50 25 chr9 105434231 105434431 -18641741 + ID_B1 SINE B4 5 209 -15 7 1389 346 186 23 0 chr9 105434528 105434614 -18641558 + CT-rich Low_complexity Low_complexity 3 90 0 7 1389 309 321 12 0 chr9 105434652 105434736 -18641436 + PB1D10 SINE Alu 29 113 -4 7 1389 2330 125 3 0 chr9 105434767 105435095 -18641077 - ORR1A4 LTR MaLR 0 329 1 7 1389 760 204 0 21 chr9 105435110 105435255 -18640917 + B1F SINE Alu 7 148 -1 7 1389 204 240 0 0 chr9 105435260 105435310 -18640862 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 7 1389 244 271 119 34 chr9 105435356 105435532 -18640640 - MLT1B LTR MaLR -3 387 197 7 1389 2299 148 70 13 chr9 105435896 105436293 -18639879 + MTC LTR MaLR 2 421 0 7 1389 464 294 9 0 chr9 105436316 105436425 -18639747 + RSINE1 SINE B4 56 165 0 7 1389 802 98 79 0 chr9 105436545 105436714 -18639458 + URR1B DNA MER1_type 1 209 -16 7 1389 2280 151 98 126 chr9 105436773 105437362 -18638810 + RLTR25B LTR ERVK 1 573 -455 7 1389 876 111 175 139 chr9 105437285 105437536 -18638636 + ORR1A3-int LTR MaLR 499 758 -1205 7 1389 1345 135 59 63 chr9 105437391 105437644 -18638528 + MT2B LTR ERVL 35 286 -315 7 1389 1185 153 4 4 chr9 105437605 105437854 -18638318 + ORR1A3-int LTR MaLR 719 967 -996 7 1389 560 159 40 129 chr9 105437842 105438106 -18638066 + RLTR25B LTR ERVK 655 1028 0 7 1389 24 0 0 0 chr9 105439100 105439124 -18637048 + AT_rich Low_complexity Low_complexity 1 24 0 7 1389 483 287 109 95 chr9 105440630 105440948 -18635224 - ORR1E LTR MaLR 0 359 36 7 1389 976 153 140 20 chr9 105440948 105441148 -18635024 - URR1A DNA MER1_type 0 226 3 7 1389 483 287 109 95 chr9 105441148 105441176 -18634996 - ORR1E LTR MaLR -324 35 8 7 1389 305 292 0 0 chr9 105441500 105441572 -18634600 + PB1D7 SINE Alu 45 116 -4 7 1389 235 299 141 100 chr9 105441683 105442107 -18634065 + LTR41 LTR ERVL 18 472 -323 7 1389 447 286 7 89 chr9 105442186 105442332 -18633840 + ID_B1 SINE B4 84 217 -7 7 1389 225 235 59 0 chr9 105442288 105442339 -18633833 + PB1D7 SINE Alu 67 120 0 7 1389 22 35 0 0 chr9 105442339 105442368 -18633804 + AT_rich Low_complexity Low_complexity 1 29 0 7 1389 576 193 25 0 chr9 105442872 105442991 -18633181 - ID_B1 SINE B4 -1 223 102 7 1389 1804 179 170 18 chr9 105443498 105443991 -18632181 - RMER4B LTR ERVK 0 585 17 7 1389 257 232 40 92 chr9 105444040 105444192 -18631980 - L1MEc LINE L1 -5507 893 750 7 1389 931 214 211 81 chr9 105444456 105444640 -18631532 - RMER12 LTR ERVK -123 1199 1015 7 1389 1107 0 0 0 chr9 105444640 105444763 -18631409 + (GAGAA)n Simple_repeat Simple_repeat 5 127 0 7 1389 931 204 126 98 chr9 105444763 105445105 -18631067 - RMER12 LTR ERVK -508 1340 747 7 1389 3140 84 94 0 chr9 105445127 105445605 -18630567 - MT2B2 LTR ERVL -61 523 1 7 1389 1052 296 132 38 chr9 105445652 105446207 -18629965 - MER77 LTR ERVL 0 607 1 7 1389 291 258 0 0 chr9 105446429 105446491 -18629681 + PB1D9 SINE Alu 27 88 -32 7 1389 399 261 89 32 chr9 105446601 105446724 -18629448 + RSINE1 SINE B4 4 133 -32 7 1389 200 0 0 91 chr9 105447685 105447718 -18628454 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 7 1389 1444 65 16 0 chr9 105448207 105448391 -18627781 + B2_Mm2 SINE B2 1 187 -8 7 1389 1102 286 69 58 chr9 105448391 105448532 -18627640 - L1MB7 LINE L1 -20 6164 6027 7 1389 3062 28 0 0 chr9 105448532 105448916 -18627256 + L1Md_F2 LINE L1 6223 6582 0 7 1389 1102 286 69 58 chr9 105448916 105449324 -18626848 - L1MB7 LINE L1 -158 6026 5607 7 1389 608 181 114 30 chr9 105449390 105449521 -18626651 - RSINE1 SINE B4 -13 152 11 7 1389 232 234 0 30 chr9 105449791 105449857 -18626315 - MIRb SINE MIR -95 173 110 7 1389 440 253 139 12 chr9 105450090 105450394 -18625778 - MTC LTR MaLR 0 421 1 7 1389 462 235 0 30 chr9 105450489 105450590 -18625582 - PB1D10 SINE Alu -8 109 12 7 1389 453 171 34 0 chr9 105451398 105451486 -18624686 + PB1 SINE Alu 30 120 -7 7 1389 480 256 37 22 chr9 105451896 105452032 -18624140 - RSINE1 SINE B4 -26 139 2 7 1389 645 322 51 14 chr9 105452204 105452516 -18623656 + MLT1E1 LTR MaLR 356 678 -2 7 1389 390 42 0 0 chr9 105452580 105452628 -18623544 + (CAA)n Simple_repeat Simple_repeat 2 49 0 7 1389 372 350 68 26 chr9 105452767 105453031 -18623141 - MER74B LTR ERVL -93 529 255 7 1389 469 298 23 6 chr9 105453203 105453375 -18622797 + (TG)n Simple_repeat Simple_repeat 2 176 0 7 1389 4611 125 125 47 chr9 105453414 105454303 -18621869 + RMER17B LTR ERVK 1 958 0 7 1389 708 274 211 0 chr9 105454344 105454581 -18621591 - B4A SINE B4 0 292 6 7 1389 396 0 0 0 chr9 105457213 105457257 -18618915 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1389 216 0 0 0 chr9 105458168 105458192 -18617980 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1389 332 187 105 42 chr9 105458257 105458352 -18617820 + PB1D9 SINE Alu 20 120 0 7 1389 230 294 94 68 chr9 105458663 105458780 -18617392 + MER58A DNA MER1_type 1 120 -104 7 1389 379 327 26 0 chr9 105459427 105459540 -18616632 - ID_B1 SINE B4 -7 217 102 7 1389 322 307 80 0 chr9 105459579 105459716 -18616456 - B1F SINE Alu -1 148 1 7 1389 413 188 88 10 chr9 105460188 105460290 -18615882 - PB1D7 SINE Alu -2 118 9 7 1389 426 53 0 0 chr9 105461099 105461156 -18615016 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1389 2924 59 0 0 chr9 105461394 105461783 -18614389 - MTA_Mm LTR MaLR -7 389 1 7 1389 3937 60 50 7 chr9 105461783 105462369 -18613803 - MTA_Mm-int LTR MaLR 0 1098 488 7 1389 3362 82 8 6 chr9 105463133 105463635 -18612537 - MTA_Mm-int LTR MaLR -595 503 1 7 1389 2906 59 3 3 chr9 105463635 105464025 -18612147 - MTA_Mm LTR MaLR -6 390 1 7 1389 237 33 0 0 chr9 105465768 105465798 -18610374 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1389 243 361 41 17 chr9 105466055 105466227 -18609945 + MIR SINE MIR 19 194 -68 7 1389 686 148 92 43 chr9 105466246 105466387 -18609785 + B1_Mur3 SINE Alu 1 148 -1 7 1389 382 287 28 70 chr9 105466519 105466762 -18609410 + L2a LINE L2 2875 3115 -311 7 1389 1299 206 56 53 chr9 105466833 105467191 -18608981 - ORR1D1 LTR MaLR -15 359 1 7 1389 375 276 10 0 chr9 105467193 105467291 -18608881 - L1MB7 LINE L1 -66 6118 6020 7 1389 309 336 50 46 chr9 105467348 105467607 -18608565 - L1MB7 LINE L1 -315 5863 5604 7 1389 957 131 0 0 chr9 105467607 105467760 -18608412 + (TTTCC)n Simple_repeat Simple_repeat 3 155 0 7 1389 406 236 28 19 chr9 105467773 105467881 -18608291 - B1_Mur2 SINE Alu -36 113 5 7 1389 543 69 0 0 chr9 105467901 105467973 -18608199 + (TC)n Simple_repeat Simple_repeat 2 73 0 7 1389 583 186 0 9 chr9 105468076 105468190 -18607982 - PB1D9 SINE Alu -7 113 1 7 1389 229 96 54 71 chr9 105468219 105468275 -18607897 + MTD LTR MaLR 345 399 -20 7 1389 633 263 54 142 chr9 105468392 105468800 -18607372 - L1MB7 LINE L1 -1613 4527 4175 7 1389 604 205 0 25 chr9 105468800 105468920 -18607252 - PB1D10 SINE Alu 0 117 1 7 1389 633 251 90 114 chr9 105468920 105469019 -18607153 - L1MB7 LINE L1 -1966 4180 4090 7 1389 2509 151 16 35 chr9 105469019 105469445 -18606727 - MTC LTR MaLR -3 418 1 7 1389 633 251 90 114 chr9 105469445 105469471 -18606701 - L1MB7 LINE L1 -2057 4089 4077 7 1389 1142 187 112 195 chr9 105469471 105469882 -18606290 - ORR1C2 LTR MaLR -4 380 4 7 1389 633 251 90 114 chr9 105469882 105469994 -18606178 - L1MB7 LINE L1 -2070 4076 3943 7 1389 272 271 35 23 chr9 105470185 105470272 -18605900 + L2a LINE L2 3333 3420 -6 7 1389 8040 62 6 2 chr9 105470452 105471701 -18604471 + L1_Mus2 LINE L1 5307 6566 0 7 1389 30 0 0 0 chr9 105471886 105471916 -18604256 + AT_rich Low_complexity Low_complexity 1 30 0 7 1389 3899 129 48 16 chr9 105471928 105472560 -18603612 + Lx LINE L1 5998 6649 -5 7 1389 221 189 0 0 chr9 105472574 105472611 -18603561 + A-rich Low_complexity Low_complexity 1 37 0 7 1389 216 0 0 0 chr9 105472869 105472893 -18603279 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1389 1755 117 25 51 chr9 105473052 105473154 -18603018 + ORR1B2 LTR MaLR 61 152 -215 7 1389 315 0 0 0 chr9 105473154 105473189 -18602983 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1389 1755 117 25 51 chr9 105473189 105473401 -18602771 + ORR1B2 LTR MaLR 153 366 -1 7 1389 358 344 103 5 chr9 105473438 105473651 -18602521 + Ricksha DNA MuDR 2535 2768 -478 7 1389 418 187 60 0 chr9 105473829 105473995 -18602177 + (CAGA)n Simple_repeat Simple_repeat 2 177 0 7 1389 326 182 73 0 chr9 105474090 105474255 -18601917 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 7 1389 275 125 104 0 chr9 105474316 105474364 -18601808 - Lx4B LINE L1 -348 6710 6658 7 1389 423 175 27 6 chr9 105474689 105474789 -18601383 + Ricksha DNA MuDR 2827 2933 -313 7 1389 251 278 27 14 chr9 105474831 105474904 -18601268 - PB1D10 SINE Alu -42 75 2 7 1389 1242 78 24 0 chr9 105475490 105475657 -18600515 - Lx4A LINE L1 -230 6828 6658 7 1389 1126 119 149 5 chr9 105475652 105475846 -18600326 + Lx4A LINE L1 6837 7058 0 7 1389 203 238 30 45 chr9 105475893 105475959 -18600213 + GA-rich Low_complexity Low_complexity 4 68 0 7 1389 267 54 0 0 chr9 105476700 105476737 -18599435 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1389 659 231 12 75 chr9 105476749 105476922 -18599250 + RSINE1 SINE B4 4 165 0 7 1389 736 237 0 0 chr9 105476968 105477103 -18599069 - B1_Mur2 SINE Alu -3 146 12 7 1389 234 0 0 0 chr9 105477260 105477286 -18598886 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1389 3501 23 2 5 chr9 105477311 105477708 -18598464 + MTA_Mm LTR MaLR 1 396 0 7 1389 234 91 0 0 chr9 105477956 105477989 -18598183 + (TTA)n Simple_repeat Simple_repeat 2 34 0 7 1389 2342 150 34 2 chr9 105477989 105478397 -18597775 + MTC LTR MaLR 1 421 0 7 1389 394 294 87 0 chr9 105478415 105478541 -18597631 - B1F1 SINE Alu -10 139 3 7 1389 1154 193 42 28 chr9 105478837 105479125 -18597047 + ORR1E LTR MaLR 1 292 -67 7 1389 335 96 0 19 chr9 105479146 105479199 -18596973 - HAL1-3A_ME LINE L1 -831 2027 1976 7 1389 717 181 0 0 chr9 105479199 105479337 -18596835 + (TG)n Simple_repeat Simple_repeat 2 139 0 8 1389 728 255 42 103 chr9 105479346 105479608 -18596564 - B4A SINE B4 -6 286 41 8 1389 435 282 44 66 chr9 105479825 105480053 -18596119 + L1M3 LINE L1 2119 2341 -3799 8 1389 1031 139 159 5 chr9 105480091 105480286 -18595886 + URR1B DNA MER1_type 1 225 0 8 1389 480 18 0 0 chr9 105480512 105480569 -18595603 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1389 256 278 35 53 chr9 105480607 105480721 -18595451 + L1M5 LINE L1 5676 5787 -657 8 1389 449 271 148 84 chr9 105480759 105481009 -18595163 + B4 SINE B4 3 268 -24 8 1389 337 244 0 0 chr9 105481401 105481487 -18594685 - B4A SINE B4 0 292 207 8 1389 1770 103 13 35 chr9 105481490 105481953 -18594219 - MT2B2 LTR ERVL -42 542 1 8 1389 707 224 103 15 chr9 105481953 105482145 -18594027 - B4A SINE B4 -83 209 1 8 1389 633 238 157 86 chr9 105483059 105483443 -18592729 - MTE2a LTR MaLR -14 405 12 8 1389 248 283 115 34 chr9 105483508 105483642 -18592530 + MIRb SINE MIR 14 155 -121 8 1389 979 290 64 10 chr9 105483663 105483976 -18592196 + Lx9 LINE L1 7144 7473 -171 8 1389 360 226 49 76 chr9 105483985 105484129 -18592043 - MTEa LTR MaLR -33 346 207 8 1389 228 402 9 0 chr9 105484166 105484273 -18591899 - MTEa LTR MaLR -248 111 4 8 1389 203 88 29 0 chr9 105484378 105484412 -18591760 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1389 1037 232 5 5 chr9 105485328 105485536 -18590636 - B3 SINE B2 -8 208 1 8 1389 237 194 55 82 chr9 105485704 105485777 -18590395 - B4A SINE B4 0 292 222 8 1389 1026 224 0 28 chr9 105485784 105485845 -18590327 - B3 SINE B2 -5 211 151 8 1389 2650 68 3 0 chr9 105485845 105486171 -18590001 - ORR1A2 LTR MaLR 0 327 1 8 1389 1026 224 0 28 chr9 105486171 105486325 -18589847 - B3 SINE B2 -66 150 2 8 1389 615 303 195 0 chr9 105486325 105486518 -18589654 - B4A SINE B4 -61 231 1 8 1389 610 238 38 8 chr9 105487391 105487522 -18588650 - ID_B1 SINE B4 -7 217 83 8 1389 310 256 21 62 chr9 105487565 105487661 -18588511 - ID_B1 SINE B4 -131 93 2 8 1389 5142 49 2 6 chr9 105488572 105489241 -18586931 - L1Md_F2 LINE L1 0 6582 5948 8 1389 1604 184 121 89 chr9 105489943 105490349 -18585823 + MTD LTR MaLR 1 419 0 8 1389 288 283 26 86 chr9 105492866 105492901 -18583271 + RMER12 LTR ERVK 742 771 -551 8 1389 603 0 0 0 chr9 105492901 105492968 -18583204 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 8 1389 288 283 26 86 chr9 105492968 105493048 -18583124 + RMER12 LTR ERVK 772 850 -472 8 1389 502 332 25 10 chr9 105493096 105493300 -18582872 - B4 SINE B4 -81 211 5 8 1389 438 261 8 56 chr9 105493306 105493432 -18582740 - PB1D7 SINE Alu 0 120 1 8 1389 305 313 10 10 chr9 105494453 105494553 -18581619 + PB1D10 SINE Alu 4 103 -14 8 1389 780 159 0 0 chr9 105494555 105494693 -18581479 + GA-rich Low_complexity Low_complexity 2 139 0 8 1389 482 274 71 39 chr9 105494953 105495045 -18581127 - L1MA4 LINE L1 -419 5881 5792 8 1389 1419 45 79 0 chr9 105495045 105495204 -18580968 + B2_Mm1t SINE B2 2 160 -33 8 1389 315 0 0 0 chr9 105495204 105495239 -18580933 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 8 1389 1419 45 79 0 chr9 105495239 105495257 -18580915 + B2_Mm1t SINE B2 161 191 -2 8 1389 482 274 71 39 chr9 105495257 105495346 -18580826 - L1MA4 LINE L1 -509 5791 5694 8 1389 303 167 19 0 chr9 105495631 105495685 -18580487 + PB1D9 SINE Alu 1 55 -65 8 1389 268 314 38 53 chr9 105495873 105496004 -18580168 - MER110A LTR ERV1 -58 410 282 8 1389 861 274 10 0 chr9 105496008 105496212 -18579960 + B3 SINE B2 6 211 -5 8 1389 338 214 44 22 chr9 105496248 105496339 -18579833 + B3A SINE B2 1 93 -105 8 1389 659 142 7 0 chr9 105496339 105496487 -18579685 + (CA)n Simple_repeat Simple_repeat 1 149 0 8 1389 192 77 0 0 chr9 105496900 105496926 -18579246 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1389 287 304 93 6 chr9 105497010 105497172 -18579000 - LTR37A LTR ERV1 -44 382 207 8 1389 24 32 0 0 chr9 105497295 105497326 -18578846 + AT_rich Low_complexity Low_complexity 1 31 0 8 1389 566 284 14 0 chr9 105497361 105497502 -18578670 + B1F SINE Alu 1 143 -6 8 1389 253 103 17 33 chr9 105498351 105498411 -18577761 + (CAAA)n Simple_repeat Simple_repeat 3 61 0 8 1389 28 29 0 0 chr9 105498620 105498655 -18577517 + AT_rich Low_complexity Low_complexity 1 35 0 8 1389 324 272 143 11 chr9 105498827 105499002 -18577170 - Lx7 LINE L1 -325 7371 7174 8 1389 1409 205 67 4 chr9 105499051 105499320 -18576852 - Lx6 LINE L1 -169 7291 7006 8 1389 211 204 0 0 chr9 105499320 105499349 -18576823 + T-rich Low_complexity Low_complexity 16 44 0 8 1389 921 244 9 9 chr9 105499349 105499564 -18576608 - B3 SINE B2 0 216 2 8 1389 211 204 0 0 chr9 105499564 105499578 -18576594 + T-rich Low_complexity Low_complexity 2 15 0 8 1389 817 190 0 37 chr9 105499615 105499779 -18576393 - RSINE1 SINE B4 -5 160 3 8 1389 319 299 82 35 chr9 105499817 105499987 -18576185 - L1ME1 LINE L1 -2 6177 6000 8 1389 267 254 0 9 chr9 105500000 105500078 -18576094 - ID4 SINE ID -54 98 23 1 1389 992 155 0 0 chr9 105500217 105500365 -18575807 + B1_Mur1 SINE Alu 2 149 0 2 1389 399 217 0 0 chr9 105500366 105500472 -18575700 + A-rich Low_complexity Low_complexity 1 106 0 3 1389 326 319 57 5 chr9 105500472 105500664 -18575508 - L1ME1 LINE L1 -321 5858 5657 4 1389 918 260 5 5 chr9 105500676 105500885 -18575287 + B3 SINE B2 2 210 -6 5 1389 342 360 58 16 chr9 105500911 105501219 -18574953 - L1MA9 LINE L1 -39 6273 5953 6 1389 195 42 0 0 chr9 105501243 105501267 -18574905 + (CCA)n Simple_repeat Simple_repeat 1 24 0 7 1389 374 211 66 33 chr9 105502135 105502316 -18573856 - Lx9 LINE L1 0 7644 7458 8 1389 269 198 0 11 chr9 105502316 105502403 -18573769 + (TA)n Simple_repeat Simple_repeat 1 86 0 9 1389 646 229 53 0 chr9 105502403 105502534 -18573638 - Lx9 LINE L1 -758 6886 6749 8 1389 635 271 72 34 chr9 105502537 105502886 -18573286 + Lx9 LINE L1 5748 6103 -1541 1 1389 438 269 0 0 chr9 105502947 105503103 -18573069 + (TA)n Simple_repeat Simple_repeat 2 157 0 1 1389 216 253 0 0 chr9 105503119 105503194 -18572978 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1389 464 276 9 0 chr9 105503194 105503299 -18572873 + Lx9 LINE L1 6421 6526 -1118 1 1389 442 245 34 9 chr9 105503465 105503625 -18572547 - L1ME1 LINE L1 -649 5545 5381 4 1389 605 202 244 0 chr9 105503771 105503939 -18572233 - B3 SINE B2 -6 210 2 1 1389 989 272 60 62 chr9 105504205 105504621 -18571551 + MTD LTR MaLR 5 419 0 1 1389 1648 236 67 114 chr9 105505410 105506079 -18570093 + RLTR26 LTR ERVK 5 642 0 1 1389 297 250 138 0 chr9 105506270 105506386 -18569786 - L1MC5 LINE L1 -579 7382 7251 1 1389 426 85 0 0 chr9 105506643 105506702 -18569470 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 1 1389 888 143 5 81 chr9 105506702 105506900 -18569272 - ORR1D1 LTR MaLR -191 183 1 1 1389 302 192 104 52 chr9 105507163 105507240 -18568932 - PB1D7 SINE Alu -39 81 1 1 1389 420 265 47 93 chr9 105507266 105507285 -18568887 + B4 SINE B4 77 219 -73 1 1389 886 131 0 21 chr9 105507285 105507416 -18568756 + B1_Mur4 SINE Alu 13 143 -7 2 1389 513 0 0 0 chr9 105507416 105507473 -18568699 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 2 1389 333 296 90 53 chr9 105507954 105508143 -18568029 - B3A SINE B2 0 198 3 2 1389 284 231 89 13 chr9 105508270 105508349 -18567823 - PB1D10 SINE Alu -9 108 24 2 1389 302 242 0 0 chr9 105508390 105508456 -18567716 - ID4_ SINE ID -16 67 2 2 1389 241 253 112 31 chr9 105508816 105508914 -18567258 + RMER20B LTR ERVK 131 236 -391 2 1389 444 189 55 36 chr9 105509470 105509580 -18566592 - PB1D10 SINE Alu -1 116 5 2 1389 2668 87 146 30 chr9 105509599 105510025 -18566147 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1389 3598 85 17 24 chr9 105510027 105510842 -18565330 + IAPEz-int LTR ERVK 3 662 -5819 2 1389 973 59 0 0 chr9 105510842 105510961 -18565211 + IAPEz-int LTR ERVK 1359 1477 -5004 2 1389 1925 82 4 0 chr9 105510962 105511207 -18564965 + IAPEz-int LTR ERVK 2252 2497 -5183 2 173 15586 41 3 1 chr9 105511206 105513027 -18563145 + IAPEz-int LTR ERVK 4656 6481 0 2 1390 2617 91 34 34 chr9 105513027 105513438 -18562734 + IAPLTR2a LTR ERVK 1 411 0 2 1390 973 239 24 0 chr9 105513815 105514024 -18562148 - B3 SINE B2 0 216 3 2 1390 21 36 0 0 chr9 105514043 105514071 -18562101 + AT_rich Low_complexity Low_complexity 1 28 0 3 1390 347 294 13 101 chr9 105514091 105514250 -18561922 - RSINE1 SINE B4 -1 164 20 3 1390 469 221 134 26 chr9 105514790 105514975 -18561197 - MTEa LTR MaLR -4 415 200 3 1390 507 327 36 27 chr9 105515018 105515238 -18560934 - MTEa LTR MaLR -157 222 1 3 1390 212 100 0 48 chr9 105517185 105517227 -18558945 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 3 1390 775 266 12 6 chr9 105517240 105517410 -18558762 - B4 SINE B4 -18 274 104 3 1390 204 180 80 0 chr9 105518025 105518075 -18558097 - MER5A DNA MER1_type -2 187 134 3 1390 252 186 48 48 chr9 105519351 105519413 -18556759 - B1F SINE Alu -3 146 85 3 1390 311 220 0 0 chr9 105519362 105519421 -18556751 - ID_B1 SINE B4 -11 213 155 3 1390 279 0 0 0 chr9 105519873 105519904 -18556268 + (TTTCC)n Simple_repeat Simple_repeat 1 31 0 3 1390 1392 56 0 0 chr9 105519906 105520084 -18556088 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 3 1390 245 98 24 0 chr9 105520085 105520126 -18556046 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 4 1390 574 186 36 6 chr9 105520715 105520883 -18555289 + GA-rich Low_complexity Low_complexity 3 175 0 4 1390 227 79 0 26 chr9 105521505 105521544 -18554628 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1390 280 181 42 0 chr9 105522306 105522378 -18553794 + RMER17C LTR ERVK 204 278 -132 4 1390 560 233 24 30 chr9 105522499 105522663 -18553509 + B4A SINE B4 44 206 -86 4 1390 2341 126 57 31 chr9 105522791 105523033 -18553139 + RLTR23 LTR ERV1 1 254 -176 4 1390 1222 42 0 0 chr9 105523033 105523176 -18552996 + B1_Mus2 SINE Alu 2 144 -3 4 1390 2341 126 57 31 chr9 105523176 105523352 -18552820 + RLTR23 LTR ERV1 255 429 -1 4 1390 3877 179 95 127 chr9 105523464 105524536 -18551636 - Lx5 LINE L1 0 7058 6021 4 1390 41782 9 1 6 chr9 105525861 105532219 -18543953 - L1Md_A LINE L1 0 6582 260 4 1390 6995 120 3 5 chr9 105532748 105533843 -18542329 + RLTR21 LTR ERVK 1 1093 -479 4 1390 348 24 0 0 chr9 105533846 105533887 -18542285 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1390 1345 174 55 26 chr9 105533887 105534158 -18542014 + RLTR21 LTR ERVK 1294 1572 0 4 1390 4939 160 14 73 chr9 105534158 105535193 -18540979 - L1_Mur2 LINE L1 -3362 2518 1542 5 1390 216 0 0 0 chr9 105535193 105535217 -18540955 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 1390 991 97 0 0 chr9 105535224 105535368 -18540804 - B2_Mm2 SINE B2 -51 144 1 5 1390 4897 164 19 102 chr9 105535368 105536052 -18540120 - L1_Mur2 LINE L1 -4317 1557 892 5 1390 257 132 0 0 chr9 105536292 105536330 -18539842 + PB1D10 SINE Alu 64 101 -16 5 1390 625 289 39 27 chr9 105536486 105536742 -18539430 + RMER15 LTR ERVL 300 558 -17 5 1390 258 276 102 0 chr9 105537177 105537275 -18538897 - B1F SINE Alu -8 141 34 5 1390 275 155 0 11 chr9 105537798 105537857 -18538315 - B1_Mus2 SINE Alu 0 120 62 5 1390 192 40 0 0 chr9 105538274 105538299 -18537873 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1390 828 50 233 0 chr9 105538303 105538423 -18537749 - B1_Mus1 SINE Alu 0 148 1 5 1390 180 77 0 0 chr9 105538650 105538676 -18537496 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1390 275 323 47 51 chr9 105539081 105539316 -18536856 + RMER15 LTR ERVL 327 560 -15 6 1390 1288 211 182 139 chr9 105539816 105540283 -18535889 + MT2A LTR ERVL 1 464 -69 6 1390 843 55 0 0 chr9 105540283 105540392 -18535780 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 6 1390 1288 211 182 139 chr9 105540392 105540435 -18535737 + MT2A LTR ERVL 465 532 -1 6 1390 210 284 6 6 chr9 105540437 105540524 -18535648 - L2a LINE L2 -259 3167 3077 6 1390 516 194 0 0 chr9 105540694 105540823 -18535349 + (TG)n Simple_repeat Simple_repeat 2 130 0 6 1390 273 169 0 0 chr9 105540846 105540905 -18535267 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1390 245 301 11 57 chr9 105541143 105541231 -18534941 - Lx8 LINE L1 -190 7283 7200 6 1390 572 109 108 10 chr9 105541319 105541421 -18534751 - PB1D9 SINE Alu -4 116 5 6 1390 298 322 8 17 chr9 105542530 105542647 -18533525 - PB1D10 SINE Alu 0 117 2 6 1390 737 96 186 31 chr9 105542758 105542887 -18533285 - B1_Mur3 SINE Alu 0 149 1 6 1390 884 220 19 39 chr9 105542888 105543096 -18533076 + B3 SINE B2 9 212 -4 7 1390 851 284 25 11 chr9 105543222 105543496 -18532676 + L1M4 LINE L1 5325 5602 -576 7 1390 1259 173 104 29 chr9 105543625 105543671 -18532501 - ORR1C2 LTR MaLR -44 340 297 7 1390 2592 106 30 17 chr9 105543671 105544075 -18532097 - RLTR9E LTR ERVK 0 409 1 7 1390 1259 173 104 29 chr9 105544075 105544344 -18531828 - ORR1C2 LTR MaLR -88 296 1 7 1390 236 342 126 19 chr9 105544634 105544896 -18531276 - Lx8 LINE L1 -132 7341 7052 7 1390 203 125 0 24 chr9 105544909 105544950 -18531222 + (CATA)n Simple_repeat Simple_repeat 3 42 0 7 1390 333 216 112 0 chr9 105544950 105545047 -18531125 - B1_Mm SINE Alu -2 118 11 7 1390 512 177 9 26 chr9 105546150 105546266 -18529906 + ID_B1 SINE B4 109 222 -2 7 1390 411 21 0 0 chr9 105547898 105547946 -18528226 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1390 615 251 92 28 chr9 105548013 105548230 -18527942 - B4 SINE B4 -60 232 2 7 1390 180 0 0 0 chr9 105548237 105548257 -18527915 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 8 1390 468 0 0 0 chr9 105548667 105548719 -18527453 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1390 217 281 110 0 chr9 105548817 105548899 -18527273 - PB1D10 SINE Alu -22 95 5 8 1390 379 190 40 10 chr9 105548941 105549042 -18527130 - ORR1D1 LTR MaLR -1 373 270 8 1390 308 244 24 0 chr9 105549429 105549511 -18526661 - L1M4 LINE L1 -3457 2689 2606 8 1390 28 29 0 0 chr9 105549531 105549566 -18526606 + AT_rich Low_complexity Low_complexity 1 35 0 8 1390 522 0 0 0 chr9 105549583 105549641 -18526531 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1390 611 261 6 19 chr9 105549648 105549804 -18526368 - RSINE1 SINE B4 -10 155 2 8 1390 193 371 105 0 chr9 105549894 105549999 -18526173 - L2a LINE L2 -17 3409 3294 8 1390 636 193 49 28 chr9 105550082 105550226 -18525946 - B1_Mur3 SINE Alu 0 149 3 8 1390 402 157 164 18 chr9 105551153 105551270 -18524902 - B1F SINE Alu -22 127 4 9 1390 192 40 0 0 chr9 105551813 105551838 -18524334 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1390 262 217 261 0 chr9 105551843 105551935 -18524237 - B3A SINE B2 -38 160 45 9 1390 210 171 0 0 chr9 105552439 105552480 -18523692 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1390 254 232 44 124 chr9 105552489 105552602 -18523570 - PB1D10 SINE Alu -13 104 1 9 1390 2956 59 20 22 chr9 105553328 105553729 -18522443 - MTB LTR MaLR 0 400 1 9 1390 5278 116 13 36 chr9 105554599 105555451 -18520721 - Lx4B LINE L1 0 7058 6227 9 1390 395 186 97 10 chr9 105556096 105556199 -18519973 + PB1D7 SINE Alu 3 114 -6 9 1390 340 186 2 7 chr9 105556959 105557027 -18519145 + B1_Mur2 SINE Alu 80 139 -10 9 1390 263 305 42 8 chr9 105557855 105557974 -18518198 - RSINE1 SINE B4 -2 163 41 9 1390 289 300 33 0 chr9 105558178 105558268 -18517904 - PB1D10 SINE Alu 0 117 25 1 1390 1921 176 86 8 chr9 105558567 105558950 -18517222 - MTD LTR MaLR -6 413 1 1 1390 189 0 0 0 chr9 105558955 105558976 -18517196 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1390 337 280 30 10 chr9 105560121 105560222 -18515950 - B4A SINE B4 0 292 190 1 1390 1911 224 106 9 chr9 105561018 105561635 -18514537 - L1_Mur3 LINE L1 0 5880 5183 1 1390 315 274 18 51 chr9 105561946 105562099 -18514073 - B1F SINE Alu 0 149 6 1 1390 258 276 32 75 chr9 105562019 105562113 -18514059 - ID_B1 SINE B4 -63 161 72 1 1390 296 214 28 14 chr9 105562767 105562838 -18513334 - ID4_ SINE ID -2 81 10 1 1390 1262 27 0 7 chr9 105563237 105563386 -18512786 + B1_Mus1 SINE Alu 1 148 0 1 1390 856 183 122 25 chr9 105564088 105564284 -18511888 - B3 SINE B2 -1 215 1 1 1390 435 276 40 40 chr9 105564429 105564580 -18511592 - B3A SINE B2 0 198 48 1 1390 493 274 36 15 chr9 105564584 105564721 -18511451 + B1F SINE Alu 3 142 -7 1 1390 324 222 24 36 chr9 105564725 105564809 -18511363 + ID4_ SINE ID 1 83 0 1 1390 561 154 119 30 chr9 105566302 105566436 -18509736 - B1_Mur1 SINE Alu -2 147 2 1 1390 1072 206 89 95 chr9 105566903 105567273 -18508899 - RLTR9A LTR ERVK 0 368 1 1 1390 293 227 186 0 chr9 105569006 105569103 -18507069 - PB1D7 SINE Alu -4 116 2 1 1390 657 245 47 42 chr9 105569135 105569348 -18506824 - B3 SINE B2 -1 215 2 1 1390 870 255 24 14 chr9 105569456 105569667 -18506505 + B3 SINE B2 2 214 -2 1 1390 21 36 0 0 chr9 105571743 105571771 -18504401 + AT_rich Low_complexity Low_complexity 1 28 0 1 1390 666 191 276 6 chr9 105572931 105573094 -18503078 + B3 SINE B2 5 211 -5 1 1390 607 181 171 16 chr9 105574311 105574440 -18501732 - B1_Mur3 SINE Alu 0 149 1 1 1390 550 71 0 0 chr9 105575811 105575881 -18500291 - U4 snRNA snRNA -75 70 1 1 1390 27 73 0 0 chr9 105576471 105576526 -18499646 + AT_rich Low_complexity Low_complexity 1 55 0 1 1390 390 304 106 43 chr9 105576654 105576908 -18499264 + L1M4c LINE L1 2111 2380 -4004 1 1390 1294 287 170 49 chr9 105577097 105578371 -18497801 + L1M4c LINE L1 2646 4074 -2308 1 1390 212 263 18 0 chr9 105579813 105579870 -18496302 + B4 SINE B4 2 59 -233 1 1390 572 175 42 34 chr9 105579873 105579991 -18496181 - RSINE1 SINE B4 -36 129 11 1 1390 254 220 237 0 chr9 105579976 105580035 -18496137 + B4A SINE B4 55 127 -165 1 1390 257 228 152 34 chr9 105580036 105580154 -18496018 + L1MD3 LINE L1 7845 7976 -19 1 1390 359 252 188 39 chr9 105580199 105580327 -18495845 - B1_Mur2 SINE Alu -1 148 2 1 1390 321 243 75 37 chr9 105580950 105581057 -18495115 + B1F SINE Alu 38 148 -1 1 1390 248 289 122 0 chr9 105581237 105581327 -18494845 + MIRb SINE MIR 95 195 -73 1 1390 24 0 0 0 chr9 105581533 105581557 -18494615 + AT_rich Low_complexity Low_complexity 1 24 0 1 1390 243 233 21 32 chr9 105581561 105581654 -18494518 - Lx8 LINE L1 -3 7470 7379 1 1390 1119 50 14 7 chr9 105581675 105581817 -18494355 + B1_Mus2 SINE Alu 5 147 0 1 1390 183 80 0 0 chr9 105581817 105581842 -18494330 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1390 240 271 59 0 chr9 105581842 105581927 -18494245 - Lx8 LINE L1 -149 7324 7235 1 1390 1152 264 27 27 chr9 105581929 105582330 -18493842 - L1_Rod LINE L1 -20 5827 5427 1 1390 339 289 38 22 chr9 105582526 105582710 -18493462 - L1M5 LINE L1 -433 5751 5558 1 1390 590 200 106 82 chr9 105582703 105582959 -18493213 - L1MA7 LINE L1 -41 6250 5989 1 1390 668 181 225 27 chr9 105583010 105583197 -18492975 - ID_B1 SINE B4 0 224 1 1 1390 258 313 77 17 chr9 105584141 105584258 -18491914 - PB1 SINE Alu -2 125 2 1 1390 379 191 0 0 chr9 105584341 105584404 -18491768 + PB1D9 SINE Alu 53 115 -5 1 1390 1011 221 19 0 chr9 105585032 105585240 -18490932 - B3 SINE B2 -2 214 3 1 1390 239 231 219 82 chr9 105585429 105585575 -18490597 + MTEa LTR MaLR 151 316 -63 1 1390 581 281 48 48 chr9 105585850 105586141 -18490031 - B4A SINE B4 0 292 2 1 1390 609 232 53 12 chr9 105586378 105586548 -18489624 - MLT1D LTR MaLR -313 192 16 1 1390 240 340 157 11 chr9 105586654 105586840 -18489332 + L2a LINE L2 3129 3392 -34 1 1390 523 218 195 19 chr9 105587851 105588010 -18488162 + Tigger5 DNA MER2_type 28 214 -2192 1 1390 247 344 50 38 chr9 105588064 105588224 -18487948 - MT2B2 LTR ERVL -263 321 160 1 1390 493 292 56 6 chr9 105588133 105588295 -18487877 - ID_B1 SINE B4 -53 171 2 1 1390 237 299 129 57 chr9 105589050 105589174 -18486998 - MIR SINE MIR -110 158 26 1 1390 438 20 0 0 chr9 105591541 105591592 -18484580 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1390 2487 301 92 43 chr9 105592204 105593483 -18482689 + Lx9 LINE L1 6178 7518 -126 1 1390 521 254 99 40 chr9 105593571 105593793 -18482379 - Lx8 LINE L1 -17 7456 7222 1 1390 328 262 145 69 chr9 105593931 105594062 -18482110 + B3A SINE B2 58 198 0 1 1390 268 198 44 100 chr9 105594196 105594286 -18481886 - B4 SINE B4 0 292 208 1 1390 291 221 14 29 chr9 105594327 105594397 -18481775 - B4A SINE B4 -198 94 26 1 1390 318 125 21 0 chr9 105594825 105594873 -18481299 - HAL1-3A_ME LINE L1 -833 2025 1977 1 1390 191 262 0 23 chr9 105595692 105595735 -18480437 + L4 LINE RTE 636 677 -1352 1 1390 240 313 83 12 chr9 105596090 105596174 -18479998 - MER45C DNA Tip100 -747 206 117 1 1390 342 274 106 44 chr9 105596630 105596904 -18479268 + B4 SINE B4 12 292 0 1 1390 320 306 117 75 chr9 105597021 105597328 -18478844 - L1MC4 LINE L1 -171 7711 7392 1 1390 263 319 42 17 chr9 105597376 105597494 -18478678 + RSINE1 SINE B4 43 163 -2 1 1390 395 264 0 21 chr9 105597702 105597795 -18478377 - L1MC4 LINE L1 -1215 6827 6737 1 1390 717 287 36 78 chr9 105598685 105598904 -18477268 + B4 SINE B4 83 292 0 1 1390 211 238 0 0 chr9 105598904 105598946 -18477226 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1390 350 255 60 52 chr9 105599087 105599203 -18476969 - PB1D10 SINE Alu 0 117 1 1 1390 644 277 28 0 chr9 105602389 105602530 -18473642 - RSINE1 SINE B4 -6 159 15 1 1390 458 316 126 15 chr9 105603564 105603763 -18472409 + MIR SINE MIR 18 238 -24 1 1390 483 18 0 0 chr9 105604125 105604181 -18471991 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1390 186 293 0 0 chr9 105604911 105604952 -18471220 - MIRm SINE MIR -122 154 114 1 1390 1180 194 23 5 chr9 105605374 105605591 -18470581 + URR1B DNA MER1_type 5 225 0 1 1390 232 323 75 0 chr9 105606835 105606928 -18469244 - MIR3 SINE MIR -2 206 107 1 1390 1858 229 35 8 chr9 105607683 105608083 -18468089 + MTD LTR MaLR 1 411 -8 1 1390 327 207 56 22 chr9 105608269 105608358 -18467814 + PB1D9 SINE Alu 26 117 -3 1 1390 942 112 0 0 chr9 105608939 105609117 -18467055 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 1390 518 95 0 10 chr9 105609117 105609168 -18467004 + (CAG)n Simple_repeat Simple_repeat 3 53 0 1 1390 993 106 0 0 chr9 105609168 105609348 -18466824 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1390 518 95 0 10 chr9 105609348 105609392 -18466780 + (CAG)n Simple_repeat Simple_repeat 3 46 0 1 1390 275 320 176 59 chr9 105609412 105609651 -18466521 - B4 SINE B4 -25 267 1 1 1390 769 283 37 52 chr9 105610539 105610943 -18465229 - B4A SINE B4 0 292 45 1 1390 295 315 74 99 chr9 105611039 105611282 -18464890 + MIRb SINE MIR 4 240 -28 1 1390 21 36 0 0 chr9 105612044 105612072 -18464100 + AT_rich Low_complexity Low_complexity 1 28 0 1 1390 693 275 12 0 chr9 105612399 105612570 -18463602 + ID_B1 SINE B4 1 173 -51 1 1390 183 314 121 28 chr9 105613993 105614134 -18462038 + L2a LINE L2 3273 3426 0 1 1390 384 234 0 0 chr9 105614175 105614269 -18461903 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1390 209 216 0 0 chr9 105615197 105615246 -18460926 + (CATA)n Simple_repeat Simple_repeat 1 49 0 1 1390 378 247 0 0 chr9 105615395 105615476 -18460696 - ID4 SINE ID -1 82 2 1 1390 280 237 78 88 chr9 105616067 105616169 -18460003 + Arthur1B DNA Tip100 37 137 -1088 1 1390 647 224 100 29 chr9 105616483 105616653 -18459519 + B3A SINE B2 1 182 -16 1 1390 405 0 0 0 chr9 105617272 105617317 -18458855 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1390 251 210 0 31 chr9 105618207 105618271 -18457901 + (CGGGG)n Simple_repeat Simple_repeat 1 62 0 1 1390 205 221 29 0 chr9 105618456 105618524 -18457648 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1390 422 293 17 0 chr9 105618611 105618727 -18457445 + RSINE1 SINE B4 4 121 -44 1 1390 442 298 0 0 chr9 105619363 105619477 -18456695 - PB1D10 SINE Alu 0 117 4 1 1390 286 237 109 64 chr9 105619536 105619710 -18456462 - L1M5 LINE L1 -274 5850 5649 1 1390 711 271 24 0 chr9 105620138 105620304 -18455868 + B3A SINE B2 2 171 -27 1 1390 357 43 0 0 chr9 105620306 105620353 -18455819 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 1390 475 327 33 44 chr9 105620615 105620887 -18455285 + HAL1 LINE L1 108 376 -2131 1 1390 452 300 172 35 chr9 105621277 105621962 -18454210 + HAL1 LINE L1 909 1687 -820 1 1390 451 304 32 32 chr9 105621974 105622164 -18454008 + ORR1E LTR MaLR 1 190 -169 1 1390 367 257 9 38 chr9 105622214 105622319 -18453853 + ORR1E LTR MaLR 278 379 0 1 1390 21 0 0 0 chr9 105622738 105622759 -18453413 + AT_rich Low_complexity Low_complexity 1 21 0 1 1390 331 260 94 0 chr9 105624088 105624184 -18451988 - PB1D9 SINE Alu -6 114 10 1 1390 396 244 0 0 chr9 105624630 105624720 -18451452 + B4A SINE B4 144 233 -59 1 1390 507 292 35 6 chr9 105624723 105624892 -18451280 + B3 SINE B2 28 201 -15 1 1390 23 0 0 0 chr9 105624900 105624923 -18451249 + AT_rich Low_complexity Low_complexity 1 23 0 2 1390 255 103 0 0 chr9 105625117 105625156 -18451016 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1390 1025 168 91 29 chr9 105625668 105625876 -18450296 + URR1B DNA MER1_type 1 221 -4 2 1390 3879 55 0 2 chr9 105626016 105626487 -18449685 + L1_Mus1 LINE L1 6098 6567 0 2 1390 317 207 11 0 chr9 105627210 105627297 -18448875 + (TG)n Simple_repeat Simple_repeat 2 89 0 2 1390 632 291 48 58 chr9 105627301 105627596 -18448576 - B4A SINE B4 0 292 1 2 1390 493 245 41 65 chr9 105628054 105628224 -18447948 + B4A SINE B4 117 282 -10 2 1390 223 182 0 22 chr9 105628617 105628682 -18447490 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1390 1095 232 20 50 chr9 105628682 105628981 -18447191 - B4 SINE B4 0 292 3 2 1390 921 257 84 3 chr9 105630206 105630503 -18445669 + ORR1E LTR MaLR 1 321 -38 2 1390 365 293 26 8 chr9 105630678 105630795 -18445377 - PB1D7 SINE Alu -1 119 1 2 1390 700 282 123 22 chr9 105631410 105631769 -18444403 - L1MC3 LINE L1 -148 7637 7243 2 1390 708 91 0 0 chr9 105632487 105632597 -18443575 + (CA)n Simple_repeat Simple_repeat 2 111 0 2 1390 276 100 0 0 chr9 105633559 105633599 -18442573 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 1390 396 349 26 39 chr9 105635332 105635487 -18440685 + RSINE1 SINE B4 2 154 -11 2 1390 379 311 79 21 chr9 105635550 105635790 -18440382 - MIR SINE MIR 0 262 9 2 1390 334 254 92 8 chr9 105635984 105636103 -18440069 - Lx5 LINE L1 0 7050 6922 2 1390 189 0 0 0 chr9 105636572 105636593 -18439579 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2 1390 195 42 0 0 chr9 105636659 105636683 -18439489 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1390 466 263 17 0 chr9 105637951 105638069 -18438103 + MER5A1 DNA MER1_type 1 120 -46 2 1390 257 277 274 10 chr9 105638240 105638342 -18437830 - B3A SINE B2 -69 129 1 2 1390 204 40 0 0 chr9 105639480 105639505 -18436667 + (GA)n Simple_repeat Simple_repeat 1 25 0 2 1390 253 269 30 0 chr9 105639834 105639901 -18436271 - ID4_ SINE ID -13 70 2 2 1390 270 0 0 0 chr9 105640691 105640721 -18435451 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1390 549 44 0 0 chr9 105640754 105640822 -18435350 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1390 22 80 0 0 chr9 105641280 105641330 -18434842 + AT_rich Low_complexity Low_complexity 1 50 0 2 1390 251 148 0 36 chr9 105641612 105641668 -18434504 + (TATG)n Simple_repeat Simple_repeat 4 57 0 2 1390 708 247 90 0 chr9 105642549 105642715 -18433457 + B3A SINE B2 2 182 -16 2 1390 699 236 147 20 chr9 105643487 105643738 -18432434 - B4 SINE B4 -8 284 2 2 1390 1128 92 116 0 chr9 105643770 105643943 -18432229 + B2_Mm2 SINE B2 1 193 -2 2 1390 206 95 0 23 chr9 105643943 105643986 -18432186 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 2 1391 856 174 43 62 chr9 105645664 105645873 -18430299 + B3 SINE B2 2 206 -10 2 1391 776 213 122 0 chr9 105646023 105646211 -18429961 + B3 SINE B2 6 216 0 2 1391 1670 180 98 11 chr9 105647966 105648332 -18427840 + MTD LTR MaLR 1 398 -21 2 1391 3668 116 21 26 chr9 105648336 105648903 -18427269 + LTRIS2 LTR ERV1 1 564 0 2 1391 253 246 0 66 chr9 105649169 105649230 -18426942 + Lx8 LINE L1 7181 7237 -236 2 1391 798 242 79 43 chr9 105650012 105650292 -18425880 - B4A SINE B4 -2 290 1 2 1391 425 282 129 30 chr9 105651771 105651972 -18424200 + RMER15 LTR ERVL 355 575 0 2 1391 360 0 0 0 chr9 105652366 105652406 -18423766 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2 1391 203 61 30 0 chr9 105652542 105652575 -18423597 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2 1391 1214 62 0 0 chr9 105652578 105652724 -18423448 - B1_Mus1 SINE Alu -1 147 2 2 1391 669 164 29 15 chr9 105652884 105653020 -18423152 - B1_Mur1 SINE Alu -11 138 1 2 1391 279 0 0 0 chr9 105653302 105653333 -18422839 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1391 358 191 0 0 chr9 105653334 105653397 -18422775 + PB1D10 SINE Alu 18 80 -37 2 1391 301 262 154 27 chr9 105653823 105653933 -18422239 - RSINE1 SINE B4 -28 137 14 2 1391 481 320 6 25 chr9 105654259 105654419 -18421753 - RSINE1 SINE B4 -6 159 3 2 1391 1483 83 5 5 chr9 105654685 105654902 -18421270 + MTB_Mm LTR MaLR 191 407 0 2 1391 569 305 134 14 chr9 105654924 105655290 -18420882 + L1ME3A LINE L1 5598 6007 -166 2 1391 1564 188 160 23 chr9 105655306 105655818 -18420354 + RLTR31A_Mm LTR ERVK 1 582 -2 2 1391 585 0 0 0 chr9 105657174 105657239 -18418933 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1391 270 56 0 0 chr9 105657239 105657274 -18418898 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1391 559 254 40 40 chr9 105657286 105657434 -18418738 - B1_Mur1 SINE Alu 0 149 2 2 1391 228 35 0 0 chr9 105657765 105657794 -18418378 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2 1391 7722 212 78 21 chr9 105658219 105660342 -18415830 + Lx9 LINE L1 5356 7634 -10 2 1391 180 0 0 0 chr9 105660342 105660362 -18415810 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1391 7722 212 87 23 chr9 105660362 105660373 -18415799 + Lx9 LINE L1 7635 7643 -1 2 1391 384 77 0 0 chr9 105660386 105660438 -18415734 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 2 1391 181 344 17 52 chr9 105661172 105661344 -18414828 + L2b LINE L2 2969 3134 -241 2 1391 533 227 35 18 chr9 105661691 105661796 -18414376 + polypurine Low_complexity Low_complexity 1 106 0 2 1391 1362 87 43 0 chr9 105661796 105661981 -18414191 + B2_Mm2 SINE B2 1 193 -2 2 1391 533 156 33 39 chr9 105661981 105662111 -18414061 + GA-rich Low_complexity Low_complexity 54 180 0 2 1391 237 239 29 29 chr9 105662659 105662728 -18413444 + (CATG)n Simple_repeat Simple_repeat 3 71 0 2 1391 277 296 0 0 chr9 105665690 105665761 -18410411 + MER5A1 DNA MER1_type 61 131 -35 2 1391 242 294 14 29 chr9 105665759 105665829 -18410343 + ID_B1 SINE B4 24 92 -132 2 1391 594 224 114 27 chr9 105665856 105666040 -18410132 + B3 SINE B2 2 201 -15 2 1391 247 276 51 73 chr9 105666292 105666429 -18409743 - MIRb SINE MIR -33 235 102 2 1391 384 40 0 0 chr9 105666492 105666542 -18409630 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1391 316 227 137 49 chr9 105666858 105666960 -18409212 + MER81 DNA AcHobo 3 113 -1 2 1391 298 147 29 0 chr9 105667537 105667605 -18408567 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1391 426 108 0 0 chr9 105667713 105667778 -18408394 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1391 504 283 72 0 chr9 105669176 105669314 -18406858 + B1F SINE Alu 1 148 -1 2 1391 405 224 0 0 chr9 105670831 105670956 -18405216 + (TG)n Simple_repeat Simple_repeat 2 126 0 2 1391 1623 226 33 36 chr9 105672161 105672551 -18403621 + Lx6 LINE L1 6990 7378 -82 2 1391 519 271 50 0 chr9 105672609 105672749 -18403423 + RSINE1 SINE B4 3 149 -16 2 1391 332 315 15 23 chr9 105673491 105673621 -18402551 - RSINE1 SINE B4 -32 133 5 2 1391 23 0 0 0 chr9 105673673 105673696 -18402476 + AT_rich Low_complexity Low_complexity 1 23 0 2 1391 320 316 137 96 chr9 105673774 105674044 -18402128 + LTR78 LTR ERV1 1 281 -1023 2 1391 278 325 79 0 chr9 105674444 105674558 -18401614 + LTR78 LTR ERV1 831 953 -351 2 1391 1576 205 138 90 chr9 105674817 105675326 -18400846 + MT2A LTR ERVL 1 533 0 2 1391 582 15 0 0 chr9 105675649 105675716 -18400456 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1391 204 40 0 0 chr9 105675720 105675745 -18400427 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1391 945 249 9 100 chr9 105675748 105676069 -18400103 - B4 SINE B4 0 292 1 2 1391 23 33 0 0 chr9 105676496 105676526 -18399646 + GC_rich Low_complexity Low_complexity 1 30 0 2 1391 401 54 18 0 chr9 105677937 105677993 -18398179 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1391 546 221 164 11 chr9 105678052 105678235 -18397937 - B4A SINE B4 -81 211 1 2 1391 22 56 0 0 chr9 105678666 105678702 -18397470 + AT_rich Low_complexity Low_complexity 1 36 0 2 1391 2494 80 9 0 chr9 105678782 105679106 -18397066 + ORR1A2 LTR MaLR 1 327 0 2 1391 241 270 46 74 chr9 105679166 105679274 -18396898 - PB1D10 SINE Alu -11 106 2 2 1391 204 67 0 0 chr9 105679811 105679841 -18396331 + (C)n Simple_repeat Simple_repeat 1 30 0 2 1391 1159 68 0 0 chr9 105680907 105681054 -18395118 - B1_Mus1 SINE Alu 0 148 2 2 1391 487 328 89 17 chr9 105682375 105682555 -18393617 + LTR16A1 LTR ERVL 263 455 -1 2 1391 529 261 30 7 chr9 105682696 105682831 -18393341 - B1F SINE Alu -11 138 1 2 1391 551 49 12 0 chr9 105685761 105685843 -18390329 + L1Md_F2 LINE L1 6500 6582 0 2 1391 417 39 0 0 chr9 105686703 105686754 -18389418 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1391 1303 259 95 13 chr9 105687643 105687998 -18388174 + MTD LTR MaLR 1 405 -14 2 1391 206 118 0 0 chr9 105688667 105688701 -18387471 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1391 216 241 0 0 chr9 105688992 105689050 -18387122 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1391 399 214 48 48 chr9 105689566 105689669 -18386503 - PB1D10 SINE Alu -14 103 1 2 1391 180 0 0 0 chr9 105690032 105690052 -18386120 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1391 813 49 0 0 chr9 105690447 105690549 -18385623 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 1391 523 159 11 11 chr9 105691708 105691797 -18384375 - PB1D10 SINE Alu -8 109 21 2 1391 493 277 55 42 chr9 105692195 105692426 -18383746 - L1MA6 LINE L1 -195 5961 5731 2 1391 213 39 0 0 chr9 105693139 105693165 -18383007 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1391 333 0 0 0 chr9 105693165 105693202 -18382970 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1391 1593 0 0 0 chr9 105693202 105693379 -18382793 + (GGAGA)n Simple_repeat Simple_repeat 2 178 0 3 1391 759 100 0 0 chr9 105693380 105693490 -18382682 + (GGA)n Simple_repeat Simple_repeat 2 111 0 3 1391 1368 67 0 0 chr9 105693490 105693670 -18382502 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1391 304 304 49 42 chr9 105695025 105695169 -18381003 + B1F1 SINE Alu 4 148 -1 3 1391 203 26 0 133 chr9 105695488 105695533 -18380639 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1391 1276 283 109 81 chr9 105695545 105696588 -18379584 + L1MC1 LINE L1 462 1537 -4971 3 1391 2921 114 19 0 chr9 105696588 105697001 -18379171 - MTC LTR MaLR 0 421 1 3 1391 1276 283 109 81 chr9 105697001 105697050 -18379122 + L1MC1 LINE L1 1538 1584 -4924 3 1391 1265 277 97 70 chr9 105697225 105698415 -18377757 + L1MA9 LINE L1 4867 6102 -210 3 1391 636 281 136 4 chr9 105698663 105698920 -18377252 + L1MC1 LINE L1 1844 2134 -4374 3 1391 258 289 150 78 chr9 105699396 105699469 -18376703 - B2_Mm1t SINE B2 0 193 1 3 1391 509 187 140 0 chr9 105699469 105699576 -18376596 - RSINE1 SINE B4 -42 123 2 3 1391 423 83 0 0 chr9 105699978 105700038 -18376134 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1391 412 241 137 43 chr9 105700041 105700180 -18375992 - B4A SINE B4 -18 274 123 3 1391 365 295 108 8 chr9 105700244 105700374 -18375798 - B4A SINE B4 -148 144 2 3 1391 1075 309 87 43 chr9 105701249 105701871 -18374301 + L1MC1 LINE L1 5855 6503 -5 3 1391 558 0 0 0 chr9 105703056 105703118 -18373054 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1391 1109 277 11 40 chr9 105703123 105703398 -18372774 - B4A SINE B4 -22 270 4 3 1391 21 0 0 0 chr9 105704112 105704133 -18372039 + AT_rich Low_complexity Low_complexity 1 21 0 3 1391 833 248 27 45 chr9 105704518 105704681 -18371491 + ID_B1 SINE B4 4 167 -57 3 1391 1195 139 85 14 chr9 105704681 105704892 -18371280 - URR1A DNA MER1_type 0 226 1 3 1391 833 283 61 58 chr9 105704892 105705003 -18371169 + ID_B1 SINE B4 168 285 -7 3 1391 213 272 113 28 chr9 105705003 105705109 -18371063 - MIR SINE MIR -78 184 70 3 1391 940 249 66 83 chr9 105705783 105706146 -18370026 + ORR1E LTR MaLR 1 357 -2 3 1391 417 299 19 83 chr9 105706293 105706450 -18369722 + ID_B1 SINE B4 78 224 0 3 1391 532 298 21 14 chr9 105706309 105706452 -18369720 + B1F SINE Alu 6 149 0 3 1391 303 263 61 194 chr9 105706483 105706648 -18369524 + RSINE1 SINE B4 6 148 -17 3 1391 198 0 0 0 chr9 105706656 105706678 -18369494 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1391 24 0 0 0 chr9 105706711 105706735 -18369437 + AT_rich Low_complexity Low_complexity 1 24 0 3 1391 1152 115 4 0 chr9 105706737 105707016 -18369156 + (GAA)n Simple_repeat Simple_repeat 1 280 0 3 1391 324 342 34 26 chr9 105707479 105707596 -18368576 + L1MEd LINE L1 1088 1205 -4914 3 1391 210 128 82 41 chr9 105707610 105707659 -18368513 + B3 SINE B2 1 51 -165 3 1391 228 135 0 0 chr9 105707989 105708026 -18368146 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 3 1391 1130 66 0 0 chr9 105708473 105708610 -18367562 + B1_Mm SINE Alu 2 138 -9 3 1391 212 0 0 35 chr9 105708610 105708639 -18367533 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1391 312 295 117 43 chr9 105709354 105709517 -18366655 + MLT1H2 LTR MaLR 218 392 -199 3 1391 339 274 95 0 chr9 105709544 105709639 -18366533 + MLT1H2 LTR MaLR 381 484 -5 3 1391 1517 142 0 0 chr9 105710157 105710382 -18365790 - URR1B DNA MER1_type 0 225 1 3 1391 255 212 175 0 chr9 105710855 105710935 -18365237 - MER5A1 DNA MER1_type -69 97 4 3 1391 585 0 0 0 chr9 105710972 105711037 -18365135 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1391 304 282 203 78 chr9 105711192 105711384 -18364788 + MER20 DNA MER1_type 1 216 -3 3 1391 245 320 96 39 chr9 105711418 105711574 -18364598 - MLT2D LTR ERVL -35 379 215 3 1391 214 318 15 0 chr9 105711909 105711975 -18364197 - MIR SINE MIR -180 82 16 3 1391 228 329 116 7 chr9 105712358 105712496 -18363676 + MER5A1 DNA MER1_type 9 161 -5 3 1391 202 132 26 0 chr9 105712559 105712597 -18363575 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 3 1391 554 344 13 7 chr9 105712608 105712760 -18363412 - RSINE1 SINE B4 -9 156 4 3 1391 572 261 62 0 chr9 105713003 105713133 -18363039 + ID_B1 SINE B4 87 224 0 3 1391 522 267 178 45 chr9 105713145 105713392 -18362780 + B4A SINE B4 3 282 -10 3 1391 328 264 36 12 chr9 105713426 105713680 -18362492 + (CATATA)n Simple_repeat Simple_repeat 1 260 0 3 1391 973 282 29 36 chr9 105714337 105714555 -18361617 + B4A SINE B4 7 215 -77 3 1391 231 36 0 0 chr9 105714555 105714583 -18361589 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 3 1391 973 282 29 36 chr9 105714583 105714643 -18361529 + B4A SINE B4 216 281 -11 3 1391 210 37 0 0 chr9 105714643 105714670 -18361502 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1391 183 167 23 23 chr9 105714859 105714902 -18361270 + MIRm SINE MIR 107 149 -127 3 1391 881 227 65 80 chr9 105714962 105715225 -18360947 - RMER1C Other Other -17 1325 1067 3 1391 191 368 66 0 chr9 105715331 105715407 -18360765 - L2b LINE L2 -37 3389 3309 3 1391 474 321 96 9 chr9 105715592 105715812 -18360360 + L2a LINE L2 2782 3020 -399 3 1391 1219 273 72 146 chr9 105715814 105716453 -18359719 + RLTR18 LTR ERVK 1 592 -24 3 1391 185 191 95 0 chr9 105716557 105716599 -18359573 + L2a LINE L2 3118 3163 -263 3 1391 208 284 121 24 chr9 105716853 105717019 -18359153 - L2b LINE L2 -213 3162 2981 3 1391 347 308 126 15 chr9 105717107 105717242 -18358930 + B4 SINE B4 76 225 -67 3 1391 351 231 31 0 chr9 105717295 105717360 -18358812 + B4 SINE B4 224 290 -2 3 1391 237 83 0 0 chr9 105717370 105717406 -18358766 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1391 1771 180 83 23 chr9 105717455 105717842 -18358330 - MTD LTR MaLR -7 412 3 3 1391 214 200 0 127 chr9 105718089 105718152 -18358020 - ID4 SINE ID -27 56 2 3 1391 180 77 0 0 chr9 105718267 105718293 -18357879 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 1391 335 370 8 8 chr9 105719148 105719276 -18356896 + (CA)n Simple_repeat Simple_repeat 1 128 0 3 1391 189 257 27 67 chr9 105720509 105720577 -18355595 - L2b LINE L2 -2 3373 3308 3 1391 534 31 0 0 chr9 105720577 105720641 -18355531 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1391 181 224 33 49 chr9 105720793 105720854 -18355318 - L2b LINE L2 -341 3085 3026 3 1391 1369 132 24 16 chr9 105721633 105721886 -18354286 - LSU-rRNA_Hsa rRNA rRNA -180 4855 4601 3 1391 939 278 133 59 chr9 105722177 105722567 -18353605 - MTD LTR MaLR 0 419 1 3 1391 297 346 108 9 chr9 105722729 105722942 -18353230 - LTR16C LTR ERVL -253 236 3 3 1391 285 29 0 0 chr9 105724362 105724396 -18351776 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 3 1391 456 250 78 0 chr9 105724401 105724517 -18351655 - ID_B1 SINE B4 -13 211 87 3 1391 470 267 177 48 chr9 105724568 105724816 -18351356 + B4A SINE B4 1 280 -12 3 1391 709 185 211 11 chr9 105724923 105725103 -18351069 - B3 SINE B2 0 216 1 3 1391 228 86 0 0 chr9 105725289 105725324 -18350848 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1391 1282 27 0 0 chr9 105725325 105725471 -18350701 - B1_Mus2 SINE Alu -1 146 1 3 1391 478 266 30 45 chr9 105725879 105726013 -18350159 + RSINE1 SINE B4 11 142 -23 3 1391 550 289 43 22 chr9 105726166 105726304 -18349868 + B1_Mur1 SINE Alu 9 149 0 3 1391 561 207 0 0 chr9 105727014 105727242 -18348930 + (TG)n Simple_repeat Simple_repeat 1 228 0 3 1391 348 125 54 0 chr9 105727277 105727333 -18348839 - HAL1-3A_ME LINE L1 -840 2018 1960 3 1391 359 167 30 0 chr9 105727351 105727417 -18348755 - HAL1-3A_ME LINE L1 -831 2027 1960 3 1391 838 186 51 6 chr9 105727449 105727606 -18348566 - RSINE1 SINE B4 0 165 2 3 1391 639 304 97 8 chr9 105727819 105728078 -18348094 + B4A SINE B4 3 284 -8 3 1391 709 246 62 11 chr9 105728403 105728580 -18347592 + B3A SINE B2 6 191 -7 3 1391 298 303 116 33 chr9 105729048 105729229 -18346943 + B3 SINE B2 15 210 -6 3 1391 215 323 16 0 chr9 105729761 105729823 -18346349 - L2b LINE L2 -24 3351 3289 3 1391 567 96 0 0 chr9 105729935 105730018 -18346154 + (GGA)n Simple_repeat Simple_repeat 3 85 0 3 1391 543 31 0 0 chr9 105731373 105731438 -18344734 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 3 1391 228 122 0 0 chr9 105731461 105731502 -18344670 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1391 639 0 0 0 chr9 105731514 105731585 -18344587 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 1391 428 129 7 45 chr9 105731668 105731780 -18344392 - B2_Mm2 SINE B2 -6 189 82 3 1391 529 337 16 27 chr9 105732954 105733140 -18343032 - Tigger5 DNA MER2_type -2221 185 2 3 1391 23 0 0 0 chr9 105733155 105733178 -18342994 + AT_rich Low_complexity Low_complexity 1 23 0 3 1391 1030 301 121 29 chr9 105733351 105733980 -18342192 - L1MB7 LINE L1 -126 6058 5372 3 1391 732 242 33 46 chr9 105734017 105734086 -18342086 - B3A SINE B2 0 216 153 3 1391 270 0 0 0 chr9 105734086 105734116 -18342056 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1391 732 239 31 42 chr9 105734116 105734260 -18341912 - B3A SINE B2 -44 154 7 3 1391 281 244 89 38 chr9 105734358 105734516 -18341656 - L1MB7 LINE L1 -918 5228 5063 3 1391 275 321 86 35 chr9 105735114 105735133 -18341039 - L2 LINE L2 -911 2508 2490 3 1391 1179 43 0 0 chr9 105735133 105735271 -18340901 + B1_Mus2 SINE Alu 1 138 -9 3 1391 180 0 0 0 chr9 105735271 105735291 -18340881 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1391 275 321 86 35 chr9 105735291 105735467 -18340705 - L2 LINE L2 -930 2489 2303 3 1391 190 304 127 25 chr9 105735502 105735620 -18340552 - L2a LINE L2 -3 3423 3294 3 1391 307 309 47 79 chr9 105735726 105735916 -18340256 - L2a LINE L2 -320 3106 2923 3 1391 1211 204 98 4 chr9 105736387 105736633 -18339539 + MTEb LTR MaLR 3 271 -108 3 1391 183 80 0 0 chr9 105736781 105736806 -18339366 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 1391 516 275 67 14 chr9 105737818 105738013 -18338159 - LTR16C LTR ERVL -8 560 262 3 1391 392 237 107 71 chr9 105738912 105738976 -18337196 - MLT1B LTR MaLR -125 265 208 3 1391 2200 59 260 152 chr9 105738976 105739438 -18336734 - RLTR1B LTR ERV1 0 512 1 3 1391 392 237 107 71 chr9 105739438 105739541 -18336631 - MLT1B LTR MaLR -183 207 92 3 1391 665 195 86 0 chr9 105739527 105739655 -18336517 - B1_Mur2 SINE Alu -2 147 9 3 1391 530 276 96 47 chr9 105739718 105740028 -18336144 - L1MA9 LINE L1 -12 6279 5954 3 1391 2838 66 7 113 chr9 105740186 105740393 -18335779 - MTA_Mm LTR MaLR 0 396 231 3 1391 1223 48 0 0 chr9 105740393 105740538 -18335634 - B1_Mm SINE Alu 0 147 3 4 1391 2838 66 7 113 chr9 105740538 105740773 -18335399 - MTA_Mm LTR MaLR -166 230 1 3 1391 795 208 5 70 chr9 105740796 105740982 -18335190 - B3 SINE B2 0 216 43 4 1391 210 246 92 62 chr9 105740934 105740999 -18335173 - RSINE1 SINE B4 -79 86 20 4 1391 2385 92 106 21 chr9 105741188 105741565 -18334607 + RLTR9E LTR ERVK 1 409 0 4 1391 1165 131 95 24 chr9 105741981 105742192 -18333980 - URR1A DNA MER1_type 0 226 1 4 1391 302 119 42 73 chr9 105742200 105742271 -18333901 - BC1_Mm scRNA scRNA -1 82 2 4 1391 225 83 0 0 chr9 105742440 105742476 -18333696 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1391 225 0 0 0 chr9 105742476 105742501 -18333671 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1391 21 0 0 0 chr9 105743058 105743079 -18333093 + AT_rich Low_complexity Low_complexity 1 21 0 4 1391 193 276 159 11 chr9 105743086 105743174 -18332998 - MIR3 SINE MIR -48 160 60 4 1391 365 246 77 0 chr9 105743317 105743447 -18332725 - Charlie5 DNA MER1_type -95 2529 2390 4 1391 760 325 52 14 chr9 105743522 105743812 -18332360 + MTE2b LTR MaLR 4 304 -75 4 1391 1068 209 85 131 chr9 105743818 105744230 -18331942 + RLTR9C LTR ERVK 1 393 0 4 1391 324 221 35 153 chr9 105744234 105744378 -18331794 + MTEa LTR MaLR 246 372 -7 4 1391 545 325 29 0 chr9 105745113 105745322 -18330850 - L1MA4A LINE L1 -407 5896 5682 4 1391 379 340 104 35 chr9 105745355 105745803 -18330369 - MLT1G1 LTR MaLR -8 571 20 4 1391 333 0 0 0 chr9 105746096 105746133 -18330039 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1391 333 68 0 0 chr9 105746133 105746177 -18329995 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1391 287 194 81 0 chr9 105746199 105746261 -18329911 - RSINE1 SINE B4 -27 138 72 4 1391 1216 170 8 50 chr9 105746264 105746505 -18329667 + RLTR14 LTR ERV1 1 231 -151 4 1391 183 300 36 36 chr9 105746550 105746633 -18329539 - L3 LINE CR1 -72 4417 4335 4 1391 571 259 104 61 chr9 105746635 105746886 -18329286 + MLT2D LTR ERVL 74 323 -74 4 1391 867 99 0 0 chr9 105746886 105747027 -18329145 + (GA)n Simple_repeat Simple_repeat 2 142 0 4 1391 474 294 73 95 chr9 105747027 105747049 -18329123 + MLT2D LTR ERVL 324 341 -56 4 1391 186 43 0 0 chr9 105747327 105747350 -18328822 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1391 1198 247 87 11 chr9 105747867 105748065 -18328107 + L1MA7 LINE L1 5573 5783 -508 4 1391 303 122 0 0 chr9 105748065 105748114 -18328058 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1391 777 118 0 0 chr9 105748124 105748243 -18327929 + (CA)n Simple_repeat Simple_repeat 2 120 0 4 1391 1198 247 87 11 chr9 105748243 105748389 -18327783 + L1MA7 LINE L1 5793 5954 -337 4 1391 655 254 73 28 chr9 105748397 105748552 -18327620 + B3 SINE B2 1 164 -52 4 1391 4695 128 32 9 chr9 105748552 105749291 -18326881 + RMER6A LTR ERVK 1 756 0 4 1391 655 254 73 28 chr9 105749291 105749313 -18326859 + B3 SINE B2 165 186 -30 4 1391 264 167 121 0 chr9 105749372 105749438 -18326734 + L1MA7 LINE L1 6006 6079 -212 4 1391 639 276 11 112 chr9 105749441 105749629 -18326543 + MTE2b LTR MaLR 1 169 -210 4 1391 534 31 0 0 chr9 105749929 105749993 -18326179 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1391 353 153 14 0 chr9 105750207 105750279 -18325893 + A-rich Low_complexity Low_complexity 2 74 0 4 1391 516 309 76 22 chr9 105750280 105750294 -18325878 - MTEa LTR MaLR -10 369 358 4 1391 279 0 0 0 chr9 105750294 105750325 -18325847 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1391 516 284 272 21 chr9 105750325 105750545 -18325627 - MTEa LTR MaLR -22 357 79 4 1391 339 266 25 0 chr9 105750628 105750707 -18325465 + ID4 SINE ID 2 82 -1 4 1391 713 266 123 15 chr9 105750763 105751023 -18325149 + B4A SINE B4 1 288 -4 4 1391 323 239 8 23 chr9 105751100 105751233 -18324939 + GA-rich Low_complexity Low_complexity 4 134 0 4 1391 248 0 31 0 chr9 105751239 105751271 -18324901 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 4 1391 235 178 131 110 chr9 105751534 105751679 -18324493 + Lx9 LINE L1 7495 7642 -2 4 1391 217 333 113 9 chr9 105751892 105752007 -18324165 - MIRc SINE MIR -120 148 22 4 1391 240 238 20 0 chr9 105752483 105752548 -18323624 - MIRm SINE MIR -12 264 192 4 1391 644 197 33 0 chr9 105752800 105752922 -18323250 + RSINE1 SINE B4 4 129 -36 4 1391 180 0 0 0 chr9 105752982 105753002 -18323170 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 4 1391 257 246 49 0 chr9 105753310 105753371 -18322801 + MER5B DNA MER1_type 15 78 -100 4 1391 410 291 122 0 chr9 105753462 105753610 -18322562 + MER5A DNA MER1_type 2 167 -22 4 1391 456 205 11 23 chr9 105753935 105754110 -18322062 + CT-rich Low_complexity Low_complexity 2 174 0 4 1391 428 275 50 0 chr9 105754484 105754604 -18321568 - MER5A1 DNA MER1_type -24 142 17 4 1391 281 297 75 147 chr9 105754868 105755243 -18320929 - ORR1E LTR MaLR -11 348 1 4 1391 1011 222 86 22 chr9 105756234 105756501 -18319671 + MTEa LTR MaLR 38 321 -58 4 1391 992 249 60 71 chr9 105756683 105756757 -18319415 - B4 SINE B4 -12 280 220 4 1391 510 17 0 0 chr9 105756757 105756816 -18319356 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1391 992 249 60 71 chr9 105756816 105757022 -18319150 - B4 SINE B4 -73 219 3 4 1391 349 303 112 7 chr9 105758618 105758761 -18317411 - L1MA5A LINE L1 -365 5932 5775 4 1391 424 289 44 83 chr9 105760647 105760828 -18315344 + B4 SINE B4 1 174 -118 4 1391 950 143 0 6 chr9 105760842 105761018 -18315154 + (TCC)n Simple_repeat Simple_repeat 1 175 0 4 1391 432 252 30 0 chr9 105761167 105761266 -18314906 - PB1D10 SINE Alu -6 111 10 4 1391 615 270 183 13 chr9 105761281 105761499 -18314673 - Charlie2a DNA MER1_type -181 2680 2442 4 1391 351 0 0 0 chr9 105761499 105761538 -18314634 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1391 615 270 183 13 chr9 105761538 105761702 -18314470 - Charlie2a DNA MER1_type -420 2441 2234 4 1391 266 313 48 88 chr9 105761755 105761902 -18314270 - Charlie2a DNA MER1_type -2570 291 151 4 1391 346 354 70 32 chr9 105762161 105762348 -18313824 - MIRb SINE MIR -6 262 69 4 1391 335 271 211 0 chr9 105762613 105762746 -18313426 - MER5A DNA MER1_type 0 189 29 4 1391 330 331 65 45 chr9 105762828 105762983 -18313189 - MER5B DNA MER1_type 0 178 21 4 1391 1810 187 87 31 chr9 105763068 105763460 -18312712 - MTD LTR MaLR -3 416 3 4 1391 441 0 0 0 chr9 105763837 105763886 -18312286 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1391 263 416 38 0 chr9 105766035 105766220 -18309952 + MIRb SINE MIR 4 195 -73 4 1391 235 309 52 93 chr9 105767229 105767422 -18308750 - MER117 DNA MER1_type -8 189 5 4 1391 423 0 0 0 chr9 105767889 105767936 -18308236 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1391 455 287 70 101 chr9 105767958 105768245 -18307927 - B4A SINE B4 -12 280 3 4 1391 328 300 159 45 chr9 105768645 105768802 -18307370 - L1MEc LINE L1 -2272 4047 3873 4 1391 714 212 73 0 chr9 105768805 105768942 -18307230 + B1_Mur2 SINE Alu 3 149 0 4 1391 982 251 14 0 chr9 105768950 105769161 -18307011 + B3 SINE B2 3 216 0 4 1391 1129 305 115 47 chr9 105769189 105769316 -18306856 - L1MEc LINE L1 -2446 3873 3744 4 1391 1033 119 7 0 chr9 105769316 105769459 -18306713 + B1_Mus1 SINE Alu 2 145 -3 4 1391 1129 305 115 47 chr9 105769459 105770349 -18305823 - L1MEc LINE L1 -2576 3743 2787 4 1391 418 302 180 31 chr9 105770360 105770616 -18305556 - L1MEc LINE L1 -5084 1316 1023 4 1391 455 250 203 27 chr9 105770618 105770840 -18305332 + B4A SINE B4 5 265 -27 4 1391 424 256 194 28 chr9 105770899 105771129 -18305043 - L1MEc LINE L1 -5987 413 141 4 1391 1252 103 49 0 chr9 105771129 105771313 -18304859 - B2_Mm2 SINE B2 0 195 3 4 1391 424 256 194 28 chr9 105771313 105771335 -18304837 - L1MEc LINE L1 -6260 140 119 4 1391 486 49 0 0 chr9 105771420 105771481 -18304691 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1391 753 176 21 29 chr9 105772790 105772930 -18303242 - B1_Mus1 SINE Alu -1 147 9 4 1391 254 283 84 104 chr9 105772795 105772949 -18303223 - B4A SINE B4 -68 224 74 4 1391 809 247 65 11 chr9 105773034 105773218 -18302954 - B3 SINE B2 -14 202 9 4 1391 250 340 92 41 chr9 105773332 105773528 -18302644 - MIRb SINE MIR -39 229 24 4 1392 201 39 0 0 chr9 105775209 105775235 -18300937 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 4 1392 295 238 34 56 chr9 105775340 105775429 -18300743 + RSINE1 SINE B4 43 129 -36 4 1392 650 84 9 0 chr9 105775447 105775554 -18300618 + (CA)n Simple_repeat Simple_repeat 2 109 0 4 1392 267 250 68 68 chr9 105775580 105775683 -18300489 - MER5A DNA MER1_type -48 141 39 4 1392 294 106 0 0 chr9 105776191 105776238 -18299934 + (CAGGG)n Simple_repeat Simple_repeat 2 48 0 4 1392 222 37 0 0 chr9 105776264 105776291 -18299881 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 4 1392 487 122 11 11 chr9 105776603 105776694 -18299478 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 1392 1020 231 10 5 chr9 105777388 105777597 -18298575 - B3 SINE B2 -6 210 1 4 1392 735 242 8 230 chr9 105778437 105778802 -18297370 + B4 SINE B4 7 290 -2 4 1392 339 25 0 0 chr9 105779377 105779417 -18296755 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1392 537 221 0 26 chr9 105780242 105780358 -18295814 - PB1D10 SINE Alu -4 113 1 4 1392 359 330 49 66 chr9 105781870 105782156 -18294016 + Kanga1b DNA Tc2 316 596 -183 4 1392 237 302 106 121 chr9 105782488 105782827 -18293345 + ORR1E LTR MaLR 1 334 -25 4 1392 227 328 0 47 chr9 105783071 105783199 -18292973 - Charlie10 DNA MER1_type -2642 180 59 4 1392 328 258 62 0 chr9 105783264 105783361 -18292811 + MER5A1 DNA MER1_type 9 111 -55 4 1392 492 18 0 0 chr9 105785177 105785234 -18290938 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1392 753 288 30 0 chr9 105785262 105785460 -18290712 - B3 SINE B2 -7 209 6 4 1392 351 301 89 23 chr9 105786295 105786509 -18289663 - L2a LINE L2 -8 3418 3191 4 1392 1074 237 49 44 chr9 105787021 105787387 -18288785 - ORR1D2 LTR MaLR -2 368 1 4 1392 199 240 28 19 chr9 105787824 105787930 -18288242 + GA-rich Low_complexity Low_complexity 3 109 0 4 1392 183 217 0 0 chr9 105788516 105788576 -18287596 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1392 420 210 0 0 chr9 105788594 105788751 -18287421 + (TG)n Simple_repeat Simple_repeat 2 158 0 4 1392 463 259 42 79 chr9 105788756 105788945 -18287227 - B3A SINE B2 -16 182 1 4 1392 274 40 80 0 chr9 105789335 105789385 -18286787 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1392 236 294 46 0 chr9 105789475 105789584 -18286588 + RMER12 LTR ERVK 742 855 -467 5 1392 546 198 0 0 chr9 105789611 105789788 -18286384 + (TG)n Simple_repeat Simple_repeat 2 178 0 5 1392 900 245 132 24 chr9 105789928 105790217 -18285955 + ORR1E LTR MaLR 4 323 -36 5 1392 513 0 0 0 chr9 105790231 105790288 -18285884 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1392 459 0 0 0 chr9 105790288 105790338 -18285834 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1392 1229 34 7 0 chr9 105791039 105791185 -18284987 + B1_Mus2 SINE Alu 1 147 0 5 1392 207 162 0 0 chr9 105791868 105791905 -18284267 + (CATA)n Simple_repeat Simple_repeat 4 40 0 5 1392 2736 43 149 0 chr9 105791949 105792297 -18283875 + MTB LTR MaLR 1 400 0 5 1392 591 85 0 0 chr9 105792712 105792794 -18283378 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 1392 279 0 0 0 chr9 105793261 105793292 -18282880 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1392 1557 198 44 192 chr9 105795162 105795613 -18280559 + Lx9 LINE L1 7143 7516 -128 5 1392 243 0 0 0 chr9 105795613 105795640 -18280532 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1392 1557 198 44 192 chr9 105795640 105795775 -18280397 + Lx9 LINE L1 7517 7642 -2 5 1392 328 153 24 0 chr9 105796029 105796114 -18280058 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 5 1392 743 232 35 44 chr9 105796395 105796598 -18279574 + B3 SINE B2 3 203 -13 5 1392 877 263 24 0 chr9 105797699 105797904 -18278268 - B3 SINE B2 -5 211 2 5 1392 21 0 0 0 chr9 105798057 105798078 -18278094 + AT_rich Low_complexity Low_complexity 1 21 0 5 1392 719 265 75 0 chr9 105798316 105798516 -18277656 + B3 SINE B2 2 216 0 5 1392 1045 162 70 5 chr9 105798526 105798725 -18277447 + Lx7 LINE L1 7485 7696 0 5 1392 40 21 0 0 chr9 105798725 105798772 -18277400 + AT_rich Low_complexity Low_complexity 1 47 0 5 1392 382 300 16 16 chr9 105799735 105799857 -18276315 + B4A SINE B4 2 123 -169 5 1392 626 295 6 17 chr9 105799921 105800097 -18276075 + Lx8 LINE L1 7092 7265 -208 5 1392 190 0 67 0 chr9 105800290 105800320 -18275852 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1392 408 236 0 0 chr9 105801359 105801431 -18274741 - ID4 SINE ID -11 72 1 5 1392 381 75 0 0 chr9 105801564 105801617 -18274555 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1392 252 0 0 0 chr9 105801622 105801650 -18274522 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 5 1392 885 170 112 15 chr9 105801673 105801870 -18274302 + B3 SINE B2 1 216 0 5 1392 1201 48 0 0 chr9 105801896 105802042 -18274130 + B1_Mus2 SINE Alu 2 147 0 5 1392 1293 111 126 0 chr9 105802173 105802372 -18273800 - URR1A DNA MER1_type -2 224 1 5 1392 301 227 0 0 chr9 105802537 105802603 -18273569 + ID4 SINE ID 6 71 -12 5 1392 622 256 15 21 chr9 105803287 105803504 -18272668 - L1MA7 LINE L1 -396 5895 5681 5 1392 531 0 0 0 chr9 105804267 105804326 -18271846 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1392 534 250 236 49 chr9 105804979 105805224 -18270948 - B4A SINE B4 0 292 2 5 1392 23 0 0 0 chr9 105807864 105807887 -18268285 + AT_rich Low_complexity Low_complexity 1 23 0 5 1392 781 241 15 15 chr9 105808103 105808301 -18267871 - B3A SINE B2 0 198 1 5 1392 1670 164 71 26 chr9 105808647 105808997 -18267175 + ORR1D1 LTR MaLR 1 366 -8 5 1392 357 221 277 23 chr9 105810497 105810627 -18265545 + B3A SINE B2 35 197 -1 5 1392 559 241 21 28 chr9 105810635 105810780 -18265392 + B1F SINE Alu 1 144 -5 5 1392 468 336 32 14 chr9 105810953 105811170 -18265002 + MIR SINE MIR 10 230 -32 5 1392 614 188 0 18 chr9 105812097 105812211 -18263961 + B1F2 SINE Alu 15 126 -23 5 1392 421 314 80 80 chr9 105812668 105812869 -18263303 + MER20 DNA MER1_type 8 208 -11 5 1392 501 275 8 22 chr9 105813560 105813694 -18262478 - B1F SINE Alu -12 137 6 5 1392 309 183 0 0 chr9 105813698 105813758 -18262414 + T-rich Low_complexity Low_complexity 1 60 0 5 1392 217 256 25 25 chr9 105813834 105813914 -18262258 - PB1D10 SINE Alu -33 84 5 5 1392 840 135 185 0 chr9 105813952 105814130 -18262042 + URR1B DNA MER1_type 8 218 -7 5 1392 278 299 0 0 chr9 105814367 105814444 -18261728 + ID4 SINE ID 5 81 -2 5 1392 414 0 0 0 chr9 105814855 105814901 -18261271 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 5 1392 255 255 163 0 chr9 105815155 105815253 -18260919 + MER3 DNA MER1_type 76 189 -20 5 1392 465 66 0 0 chr9 105815724 105815785 -18260387 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1392 1162 210 66 35 chr9 105816482 105816768 -18259404 + ORR1E LTR MaLR 60 354 -5 5 1392 958 241 70 91 chr9 105816841 105817224 -18258948 + MTEa LTR MaLR 1 375 -4 5 1392 502 306 37 37 chr9 105818415 105818629 -18257543 + B4 SINE B4 8 221 -71 5 1392 768 169 28 7 chr9 105818645 105818788 -18257384 + B1_Mus2 SINE Alu 2 147 0 5 1392 204 186 0 0 chr9 105818788 105818847 -18257325 + A-rich Low_complexity Low_complexity 1 59 0 5 1392 407 107 13 0 chr9 105818895 105818970 -18257202 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1392 233 75 0 24 chr9 105819257 105819298 -18256874 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5 1392 389 302 111 0 chr9 105819436 105819562 -18256610 + MTE2b LTR MaLR 210 349 -30 5 1392 216 0 0 0 chr9 105820411 105820435 -18255737 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1392 2032 160 81 3 chr9 105820839 105821222 -18254950 + MTC LTR MaLR 1 413 -8 5 1392 882 162 0 0 chr9 105821242 105821421 -18254751 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1392 681 217 0 0 chr9 105821445 105821625 -18254547 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1392 424 248 154 71 chr9 105821634 105821803 -18254369 - B3A SINE B2 -15 183 1 5 1392 264 284 53 47 chr9 105822705 105822875 -18253297 - L1ME3B LINE L1 -313 5927 5757 5 1392 278 302 10 0 chr9 105823821 105823917 -18252255 + B1_Mur2 SINE Alu 38 134 -15 5 1392 552 30 0 0 chr9 105823918 105823984 -18252188 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 5 1392 224 291 0 0 chr9 105824073 105824128 -18252044 + GA-rich Low_complexity Low_complexity 4 58 0 5 1392 950 294 128 27 chr9 105824128 105824652 -18251520 + L1MB2 LINE L1 5480 6083 -88 5 1392 1040 252 64 64 chr9 105824670 105825043 -18251129 + MTEb LTR MaLR 7 379 0 5 1392 1324 40 23 6 chr9 105825228 105825404 -18250768 - L1Md_F3 LINE L1 0 6584 6406 5 1392 287 299 181 22 chr9 105827031 105827257 -18248915 - LTR16A1 LTR ERVL -2 454 193 5 1392 789 279 53 96 chr9 105827301 105827657 -18248515 + MTEa LTR MaLR 1 341 -38 5 1392 277 302 125 68 chr9 105828752 105828944 -18247228 - MER102a DNA MER1_type -1 329 127 5 1392 790 226 18 6 chr9 105829570 105829735 -18246437 + B3A SINE B2 2 168 -30 5 1392 425 228 62 62 chr9 105829727 105829872 -18246300 + B3 SINE B2 72 216 0 5 1392 309 155 0 0 chr9 105829896 105829954 -18246218 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 1392 783 269 200 3 chr9 105832640 105832950 -18243222 + Lx8 LINE L1 6948 7318 -155 5 1392 1312 269 11 11 chr9 105833806 105834084 -18242088 - B4 SINE B4 0 292 15 5 1392 233 229 171 0 chr9 105835231 105835301 -18240871 + ID4_ SINE ID 2 83 0 5 1392 1129 214 0 10 chr9 105835788 105835996 -18240176 + B3 SINE B2 1 206 -10 5 1392 731 78 49 0 chr9 105836928 105837070 -18239102 + (TTCA)n Simple_repeat Simple_repeat 4 152 0 5 1392 225 0 0 0 chr9 105837330 105837355 -18238817 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1392 390 42 0 0 chr9 105837410 105837458 -18238714 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1392 678 109 0 0 chr9 105837476 105837577 -18238595 + (TA)n Simple_repeat Simple_repeat 2 102 0 5 1392 897 248 35 0 chr9 105837619 105837817 -18238355 + B3 SINE B2 2 206 -10 5 1392 941 104 0 7 chr9 105838925 105839070 -18237102 + (CTTG)n Simple_repeat Simple_repeat 3 146 0 5 1392 237 246 16 0 chr9 105839070 105839131 -18237041 - tRNA-Ala-GCA tRNA tRNA -13 62 1 5 1392 806 184 20 13 chr9 105839875 105840024 -18236148 + B1_Mur4 SINE Alu 1 150 0 5 1392 234 62 0 0 chr9 105840024 105840056 -18236116 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 5 1392 237 322 11 32 chr9 105840143 105840236 -18235936 - MIRb SINE MIR -130 138 48 5 1392 910 246 20 0 chr9 105840734 105840929 -18235243 + B4A SINE B4 90 288 -4 5 1392 363 312 42 7 chr9 105841015 105841157 -18235015 + RSINE1 SINE B4 3 149 -16 5 1392 279 379 58 17 chr9 105841396 105841568 -18234604 + MamRep605 Unknown Unknown 417 595 -281 5 1392 225 351 21 21 chr9 105841777 105841873 -18234299 - L1ME1 LINE L1 -16 6163 6068 5 1392 184 91 45 0 chr9 105841882 105841926 -18234246 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 5 1392 2070 242 99 69 chr9 105843459 105844407 -18231765 + RMER17B LTR ERVK 5 899 -9 5 1392 359 331 139 31 chr9 105844498 105844785 -18231387 - L2 LINE L2 -732 2687 2370 5 1392 966 143 7 0 chr9 105845067 105845207 -18230965 + RMER1B Other Other 580 720 -346 5 1392 702 192 5 138 chr9 105845201 105845418 -18230754 + RMER1A Other Other 836 1023 -7 5 1392 770 177 6 0 chr9 105845440 105845598 -18230574 + GA-rich Low_complexity Low_complexity 1 159 0 5 1392 260 354 28 106 chr9 105846582 105846724 -18229448 + LTR88a LTR Gypsy 657 787 -29 5 1392 255 289 0 0 chr9 105847747 105847823 -18228349 + (CTGGGG)n Simple_repeat Simple_repeat 4 79 0 5 1392 352 107 37 37 chr9 105849317 105849424 -18226748 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 1392 1833 240 10 12 chr9 105849542 105849959 -18226213 + MTD LTR MaLR 4 419 0 5 1392 222 118 0 0 chr9 105850502 105850536 -18225636 + (TTG)n Simple_repeat Simple_repeat 2 35 0 6 1392 431 246 33 17 chr9 105851110 105851230 -18224942 + ID_B1 SINE B4 84 205 -19 6 1392 393 278 129 14 chr9 105851231 105851503 -18224669 - L1M4 LINE L1 -707 5467 5169 6 1392 772 146 35 49 chr9 105851523 105851667 -18224505 - B1_Mur4 SINE Alu -7 143 2 6 1392 1307 80 17 11 chr9 105851732 105851910 -18224262 + B2_Mm2 SINE B2 2 180 -15 6 1392 806 239 61 0 chr9 105854318 105854498 -18221674 + MTEa LTR MaLR 6 196 -183 6 1392 1129 214 104 8 chr9 105854501 105854741 -18221431 + B4 SINE B4 16 278 -14 6 1392 180 77 0 0 chr9 105854741 105854767 -18221405 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1392 603 250 8 0 chr9 105854787 105854907 -18221265 + B1_Mur2 SINE Alu 1 121 -28 6 1392 858 287 24 0 chr9 105854907 105855116 -18221056 + MTEa LTR MaLR 166 379 0 6 1392 183 292 65 33 chr9 105855493 105855585 -18220587 - L2a LINE L2 -7 3419 3325 6 1392 531 245 0 0 chr9 105855932 105856095 -18220077 + (TG)n Simple_repeat Simple_repeat 2 164 0 6 1392 411 21 0 0 chr9 105856095 105856143 -18220029 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1392 396 0 0 0 chr9 105856377 105856421 -18219751 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 6 1392 342 0 0 0 chr9 105857979 105858017 -18218155 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1392 879 227 67 5 chr9 105858134 105858196 -18217976 + B3 SINE B2 1 75 -141 6 1392 3179 130 83 27 chr9 105858196 105858750 -18217422 - RMER4B LTR ERVK 0 585 1 6 1392 879 227 67 5 chr9 105858750 105858882 -18217290 + B3 SINE B2 76 207 -9 6 1392 561 68 0 0 chr9 105858882 105858956 -18217216 + (TAAA)n Simple_repeat Simple_repeat 4 77 0 6 1392 963 132 48 37 chr9 105858980 105859169 -18217003 + B2_Mm2 SINE B2 3 193 -2 6 1392 1284 122 27 0 chr9 105859536 105859724 -18216448 + B2_Mm2 SINE B2 2 194 -1 6 1392 225 353 36 36 chr9 105859790 105859928 -18216244 - MIRb SINE MIR -44 224 87 6 1392 2504 130 23 5 chr9 105860146 105860533 -18215639 + ORR1B1 LTR MaLR 1 394 0 6 1392 294 28 0 0 chr9 105860751 105860787 -18215385 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 6 1392 4664 34 0 0 chr9 105860787 105861323 -18214849 + L1Md_T LINE L1 6046 6581 -1 6 1392 671 268 0 18 chr9 105861622 105861789 -18214383 + RSINE1 SINE B4 2 165 0 6 1392 1183 117 91 64 chr9 105862522 105862742 -18213430 - URR1A DNA MER1_type 0 226 1 6 1392 231 36 0 0 chr9 105864365 105864393 -18211779 + (TTC)n Simple_repeat Simple_repeat 3 30 0 6 1392 390 253 101 118 chr9 105865042 105865338 -18210834 + B4 SINE B4 2 292 0 6 1392 757 316 78 82 chr9 105865369 105865820 -18210352 + MER110 LTR ERV1 5 453 -38 6 1392 902 256 40 68 chr9 105865818 105866040 -18210132 + ID_B1 SINE B4 9 224 0 6 1392 408 169 14 0 chr9 105867764 105867835 -18208337 + ID4_ SINE ID 1 72 -11 6 1392 185 65 32 0 chr9 105868031 105868062 -18208110 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1392 635 166 36 26 chr9 105868070 105868213 -18207959 - PB1D9 SINE Alu -2 147 3 6 1392 332 250 0 135 chr9 105868213 105868266 -18207906 - MT2B LTR ERVL -445 156 124 6 1392 1182 112 0 0 chr9 105868676 105868854 -18207318 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 6 1392 228 35 0 0 chr9 105868882 105868911 -18207261 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1392 470 343 0 0 chr9 105870324 105870467 -18205705 - RSINE1 SINE B4 -1 164 22 6 1392 275 254 0 0 chr9 105870806 105870865 -18205307 + CT-rich Low_complexity Low_complexity 3 61 0 6 1392 24 0 0 0 chr9 105870900 105870924 -18205248 + AT_rich Low_complexity Low_complexity 1 24 0 6 1392 3534 101 6 115 chr9 105871184 105871576 -18204596 + RMER2 LTR ERV1 1 374 -193 6 1392 234 0 0 0 chr9 105871576 105871602 -18204570 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1392 3534 101 6 115 chr9 105871602 105871845 -18204327 + RMER2 LTR ERV1 375 566 -1 6 1392 497 271 103 25 chr9 105872599 105872803 -18203369 + Lx8 LINE L1 6857 7076 -397 6 1392 319 342 19 63 chr9 105872805 105872964 -18203208 - RMER10B LTR ERVL 0 398 247 6 1392 572 281 83 30 chr9 105873238 105873407 -18202765 + Lx8 LINE L1 7115 7292 -181 6 1392 695 179 24 16 chr9 105875047 105875172 -18201000 + B1_Mur2 SINE Alu 13 138 -11 6 1392 261 0 0 0 chr9 105875172 105875201 -18200971 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 1392 244 203 40 0 chr9 105875409 105875483 -18200689 + GA-rich Low_complexity Low_complexity 3 79 0 6 1392 257 145 16 0 chr9 105875649 105875711 -18200461 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 6 1392 311 329 83 50 chr9 105875890 105876108 -18200064 - RLTR42-int LTR ERVK -4150 1372 1148 6 1392 615 319 90 50 chr9 105876726 105876877 -18199295 + ORR1E LTR MaLR 3 151 -208 6 1392 1411 191 72 86 chr9 105876877 105877250 -18198922 - ORR1D2 LTR MaLR 0 370 3 6 1392 615 319 90 50 chr9 105877250 105877441 -18198731 + ORR1E LTR MaLR 152 359 0 6 1392 1851 329 104 91 chr9 105877437 105878665 -18197507 + ORR1E-int LTR MaLR 4 1245 -335 6 1392 1978 136 85 96 chr9 105878665 105879112 -18197060 + RMER10A LTR ERVL 1 442 0 6 1392 1851 329 104 91 chr9 105879112 105879318 -18196854 + ORR1E-int LTR MaLR 1246 1458 -122 6 1392 309 282 151 97 chr9 105879311 105879570 -18196602 + ORR1E LTR MaLR 45 317 -42 6 1392 489 34 0 0 chr9 105880184 105880243 -18195929 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1392 223 85 21 21 chr9 105880247 105880295 -18195877 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 6 1392 742 190 14 7 chr9 105880295 105880438 -18195734 - B1_Mur1 SINE Alu -1 148 5 6 1392 238 306 14 0 chr9 105880999 105881071 -18195101 - L2a LINE L2 -3 3423 3351 6 1392 782 353 22 91 chr9 105881415 105881910 -18194262 - MER44B DNA MER2_type -20 530 70 6 1392 840 166 0 21 chr9 105881897 105882039 -18194133 - B1_Mus1 SINE Alu 0 148 10 6 1392 400 271 75 0 chr9 105881944 105882051 -18194121 - B4A SINE B4 -98 194 80 6 1392 258 366 0 0 chr9 105882043 105882114 -18194058 - MER44B DNA MER2_type -469 81 11 6 1392 232 283 81 50 chr9 105882126 105882286 -18193886 - L2a LINE L2 -73 3353 3189 6 1392 229 155 152 17 chr9 105883132 105883162 -18193010 + B2_Mm2 SINE B2 2 39 -156 6 1392 1047 230 220 70 chr9 105883162 105883630 -18192542 + RMER2 LTR ERV1 1 538 -29 6 1392 617 295 13 7 chr9 105883645 105883795 -18192377 + B3A SINE B2 26 176 -22 6 1392 546 267 23 15 chr9 105883934 105884067 -18192105 + ID_B1 SINE B4 84 217 -7 6 1392 473 235 112 20 chr9 105884191 105884343 -18191829 + MTEa LTR MaLR 155 320 -59 6 1392 384 22 0 0 chr9 105884886 105884931 -18191241 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1392 396 178 47 21 chr9 105885097 105885213 -18190959 - ORR1E LTR MaLR -101 278 131 6 1392 216 182 0 0 chr9 105885400 105885444 -18190728 + CT-rich Low_complexity Low_complexity 1 44 0 6 1392 482 198 68 19 chr9 105885452 105885555 -18190617 - B1_Mur1 SINE Alu 0 149 42 6 1392 234 229 53 79 chr9 105885485 105885599 -18190573 - RLTR25B LTR ERVK -521 507 397 6 1392 353 245 11 0 chr9 105885601 105885695 -18190477 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 6 1392 414 241 0 0 chr9 105885695 105885861 -18190311 + (CCTG)n Simple_repeat Simple_repeat 2 167 0 6 1392 459 0 0 0 chr9 105887079 105887130 -18189042 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1392 547 262 81 8 chr9 105887134 105887257 -18188915 - RSINE1 SINE B4 -22 143 12 6 1392 245 320 101 38 chr9 105887490 105887649 -18188523 - MLT1I LTR MaLR -11 400 232 6 1392 256 261 14 14 chr9 105887889 105887959 -18188213 + MLT1H-int LTR MaLR 338 407 -1002 6 1392 325 241 205 0 chr9 105888103 105888186 -18187986 + B1_Mus1 SINE Alu 40 139 -9 6 1392 396 40 0 0 chr9 105888187 105888237 -18187935 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1392 336 102 0 0 chr9 105888238 105888287 -18187885 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 6 1392 237 288 0 15 chr9 105888396 105888463 -18187709 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1392 381 184 12 50 chr9 105888463 105888543 -18187629 - ID_B1 SINE B4 -15 209 133 6 1392 236 235 270 45 chr9 105888475 105888564 -18187608 - B1F1 SINE Alu -31 118 10 6 1392 321 47 0 0 chr9 105888594 105888637 -18187535 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1392 1189 74 0 0 chr9 105888637 105888776 -18187396 - B1_Mus1 SINE Alu -8 140 2 6 1392 319 192 26 40 chr9 105888782 105888858 -18187314 - PB1D10 SINE Alu 0 117 43 6 1392 216 298 0 0 chr9 105888866 105888923 -18187249 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 6 1392 332 197 27 40 chr9 105889026 105889100 -18187072 - ID_B1 SINE B4 -6 218 146 6 1392 332 221 174 31 chr9 105889100 105889124 -18187048 - PB1D7 SINE Alu -6 114 3 6 1392 1053 222 0 23 chr9 105889559 105889780 -18186392 + B3 SINE B2 1 216 0 6 1392 1140 161 39 10 chr9 105891072 105891279 -18184893 + B3 SINE B2 3 215 -1 6 1392 846 244 44 15 chr9 105891385 105891589 -18184583 + B3 SINE B2 1 210 -6 6 1392 225 329 95 54 chr9 105891739 105891887 -18184285 + MLT1A LTR MaLR 27 180 -185 6 1392 480 311 50 17 chr9 105891916 105892096 -18184076 + MLT1A LTR MaLR 189 374 0 6 1392 330 172 25 17 chr9 105892198 105892316 -18183856 + (TCTG)n Simple_repeat Simple_repeat 2 120 0 6 1392 281 234 13 0 chr9 105892343 105892420 -18183752 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1392 579 267 203 22 chr9 105892497 105892773 -18183399 + Lx8 LINE L1 7120 7445 -28 6 1392 323 272 54 0 chr9 105893230 105893322 -18182850 + MIRc SINE MIR 59 155 -113 6 1392 298 309 94 67 chr9 105894497 105894677 -18181495 + MER3 DNA MER1_type 16 200 -9 6 1392 616 337 68 11 chr9 105896248 105896512 -18179660 + Lx8 LINE L1 6909 7187 -286 6 1392 979 201 33 23 chr9 105897328 105897542 -18178630 + B3 SINE B2 1 216 0 6 1392 916 109 57 2 chr9 105897698 105897854 -18178318 + B2_Mm2 SINE B2 8 180 -36 6 1392 723 242 108 0 chr9 105898822 105899016 -18177156 - B3 SINE B2 -1 215 1 6 1392 899 179 0 0 chr9 105899048 105899188 -18176984 + B1_Mur4 SINE Alu 3 142 -8 6 1392 389 247 75 0 chr9 105899238 105899331 -18176841 + PB1D10 SINE Alu 18 117 0 7 1392 819 298 65 35 chr9 105899596 105899996 -18176176 + Lx8 LINE L1 6889 7300 -173 7 1392 334 285 101 83 chr9 105899996 105900381 -18175791 + L1M5 LINE L1 2163 2492 -3654 7 1392 214 279 28 56 chr9 105900465 105900537 -18175635 - MIRc SINE MIR -141 127 58 7 1392 401 220 0 115 chr9 105901540 105901653 -18174519 + PB1D10 SINE Alu 10 109 -8 7 1392 180 0 0 0 chr9 105901653 105901673 -18174499 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1392 450 241 94 36 chr9 105901677 105901815 -18174357 + MER5A1 DNA MER1_type 18 163 -3 7 1392 585 247 27 177 chr9 105902045 105902379 -18173793 + Lx8 LINE L1 7190 7473 0 7 1392 261 294 15 0 chr9 105903517 105903585 -18172587 + RMER30 DNA MER1_type 133 201 -1 7 1392 605 90 17 138 chr9 105904006 105904122 -18172050 + U6 snRNA snRNA 1 102 -5 7 1392 633 61 0 0 chr9 105904132 105904214 -18171958 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 7 1392 302 276 92 23 chr9 105904353 105904483 -18171689 + MIR SINE MIR 35 173 -89 7 1392 406 271 66 22 chr9 105904490 105904626 -18171546 + B3A SINE B2 1 142 -56 7 1392 189 273 36 0 chr9 105904696 105904751 -18171421 + MIR SINE MIR 188 244 -18 7 1392 184 265 93 12 chr9 105905053 105905151 -18171021 - MIRc SINE MIR -94 114 7 7 1392 235 390 73 20 chr9 105905194 105905440 -18170732 - MER102c DNA MER1_type -46 285 27 7 1392 372 167 141 0 chr9 105906055 105906133 -18170039 + MLT1J1 LTR MaLR 43 131 -313 7 1393 983 212 98 23 chr9 105908949 105909021 -18167151 + B4 SINE B4 2 88 -204 7 1393 207 69 0 0 chr9 105909021 105909050 -18167122 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1393 983 212 98 23 chr9 105909050 105909243 -18166929 + B4 SINE B4 89 286 -6 7 1393 792 246 65 57 chr9 105909344 105909590 -18166582 + B4A SINE B4 2 249 -43 7 1393 2919 120 170 0 chr9 105909628 105910128 -18166044 + RMER4B LTR ERVK 1 585 0 7 1393 249 33 0 0 chr9 105910143 105910173 -18165999 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1393 2349 88 25 0 chr9 105911052 105911371 -18164801 + ORR1A2 LTR MaLR 1 327 0 7 1393 249 333 112 13 chr9 105911385 105911537 -18164635 + MIRb SINE MIR 26 192 -76 7 1393 532 271 26 72 chr9 105911544 105911739 -18164433 + MTD LTR MaLR 1 186 -233 7 1393 899 266 21 28 chr9 105911771 105912053 -18164119 + B4 SINE B4 1 280 -12 7 1393 288 0 0 0 chr9 105912058 105912090 -18164082 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1393 386 254 111 0 chr9 105912328 105912454 -18163718 + MIR SINE MIR 87 226 -36 7 1393 1080 228 14 0 chr9 105913577 105913792 -18162380 - ID_B1 SINE B4 -6 218 1 7 1393 339 279 0 0 chr9 105914228 105914307 -18161865 - MADE2 DNA Mariner 0 80 2 7 1393 426 308 83 21 chr9 105914456 105914751 -18161421 + L1ME3 LINE L1 5789 6107 -55 7 1393 1316 249 15 4 chr9 105914752 105915026 -18161146 + B4 SINE B4 16 292 0 7 1393 348 64 0 0 chr9 105915026 105915073 -18161099 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1393 209 316 109 49 chr9 105915244 105915427 -18160745 + MIRb SINE MIR 73 266 -2 7 1393 352 232 110 0 chr9 105916291 105916373 -18159799 - PB1D10 SINE Alu 0 117 27 7 1393 339 355 86 135 chr9 105916444 105916978 -18159194 + MLT1J LTR MaLR 1 508 -4 7 1393 249 224 35 12 chr9 105917018 105917104 -18159068 + (TA)n Simple_repeat Simple_repeat 2 89 0 7 1393 482 258 97 0 chr9 105917513 105917637 -18158535 + B1F1 SINE Alu 6 141 -8 7 1393 257 219 26 9 chr9 105917645 105917760 -18158412 + (TA)n Simple_repeat Simple_repeat 2 118 0 7 1393 337 300 86 15 chr9 105917769 105917933 -18158239 - L1M5 LINE L1 -674 5450 5274 7 1393 876 245 46 39 chr9 105919342 105919648 -18156524 + RLTR15 LTR ERVK 1 308 -51 7 1393 1458 234 90 22 chr9 105920909 105921276 -18154896 + MTD LTR MaLR 5 396 -23 7 1393 396 0 0 0 chr9 105921994 105922038 -18154134 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1393 338 207 23 68 chr9 105922510 105922598 -18153574 + ID_B1 SINE B4 140 223 -1 7 1393 375 23 0 0 chr9 105922818 105922862 -18153310 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1393 287 273 57 37 chr9 105923445 105923580 -18152592 - L2b LINE L2 -7 3419 3272 7 1393 417 284 8 17 chr9 105923632 105923750 -18152422 + RSINE1 SINE B4 3 119 -46 7 1393 2170 138 91 30 chr9 105923790 105924185 -18151987 + RMER2 LTR ERV1 1 419 -148 7 1393 218 275 56 28 chr9 105924272 105924343 -18151829 + L4 LINE RTE 864 936 -1093 7 1393 555 362 93 16 chr9 105924604 105924916 -18151256 - MER2 DNA MER2_type 0 345 10 7 1393 986 47 0 8 chr9 105924994 105925123 -18151049 + (GGAAA)n Simple_repeat Simple_repeat 3 130 0 7 1393 212 260 20 0 chr9 105925632 105925682 -18150490 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1393 366 296 25 0 chr9 105926063 105926144 -18150028 - B4A SINE B4 -173 119 37 7 1393 676 135 23 12 chr9 105926225 105926397 -18149775 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 7 1393 508 279 22 44 chr9 105926956 105927091 -18149081 + B4A SINE B4 4 135 -157 7 1393 947 202 37 37 chr9 105927157 105927373 -18148799 + B3 SINE B2 1 216 0 7 1393 272 111 0 18 chr9 105927424 105927479 -18148693 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1393 824 303 71 59 chr9 105928887 105929230 -18146942 + Tigger5 DNA MER2_type 1 357 -9 7 1393 194 315 100 11 chr9 105929276 105929366 -18146806 + MIRc SINE MIR 47 144 -124 7 1393 600 220 0 25 chr9 105929755 105929876 -18146296 + PB1D9 SINE Alu 2 119 -1 7 1393 182 339 75 42 chr9 105931755 105931875 -18144297 + L2b LINE L2 3247 3370 -5 7 1393 379 270 130 39 chr9 105931938 105932131 -18144041 + MIR SINE MIR 18 229 -39 7 1393 342 68 0 0 chr9 105932766 105932810 -18143362 - HAL1-3A_ME LINE L1 -840 2018 1975 7 1393 420 182 0 0 chr9 105932818 105932906 -18143266 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 1393 913 234 36 92 chr9 105932906 105933212 -18142960 - B4 SINE B4 0 292 4 7 1393 1946 216 76 5 chr9 105933246 105933628 -18142544 + MTD LTR MaLR 3 411 -8 7 1393 215 314 0 54 chr9 105933706 105933780 -18142392 - PB1 SINE Alu -18 109 40 7 1393 308 283 74 30 chr9 105933922 105934144 -18142028 - L1Md_T LINE L1 -643 5941 5674 7 1393 366 235 0 76 chr9 105934857 105934949 -18141223 - B1F SINE Alu 0 149 65 7 1393 329 290 62 56 chr9 105935026 105935205 -18140967 + RLTR42-int LTR ERVK 1221 1400 -4122 7 1393 425 308 141 0 chr9 105936379 105936535 -18139637 - MER3 DNA MER1_type -7 202 25 7 1393 932 230 139 8 chr9 105936556 105936793 -18139379 + B4A SINE B4 17 284 -8 7 1393 183 292 0 0 chr9 105936851 105936923 -18139249 + (CATA)n Simple_repeat Simple_repeat 3 74 0 7 1393 4265 114 121 8 chr9 105937296 105937957 -18138215 + RMER19A LTR ERVK 2 737 0 7 1393 378 0 0 0 chr9 105938336 105938378 -18137794 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1393 310 338 81 24 chr9 105938689 105938898 -18137274 + L1MC4 LINE L1 7167 7387 -655 7 1393 334 307 50 0 chr9 105939219 105939359 -18136813 - Lx8 LINE L1 -858 6615 6469 7 1393 280 337 10 20 chr9 105939360 105939460 -18136712 + MLT1A0 LTR MaLR 19 117 -248 7 1393 590 257 46 41 chr9 105939477 105939672 -18136500 + MLT1A0 LTR MaLR 170 365 0 7 1393 257 183 0 16 chr9 105939775 105939836 -18136336 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 1393 225 247 0 0 chr9 105940089 105940170 -18136002 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1393 253 320 39 0 chr9 105940452 105940530 -18135642 + ID4_ SINE ID 3 83 0 7 1393 544 215 9 27 chr9 105940572 105940682 -18135490 + B1F SINE Alu 1 108 -41 7 1393 806 226 83 29 chr9 105940800 105941005 -18135167 - ID_B1 SINE B4 -6 218 3 7 1393 584 38 0 12 chr9 105941115 105941195 -18134977 + (TC)n Simple_repeat Simple_repeat 2 80 0 7 1393 405 0 0 0 chr9 105941195 105941239 -18134933 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1393 196 271 34 0 chr9 105941832 105941891 -18134281 - MIR3 SINE MIR -41 167 107 7 1393 222 295 0 0 chr9 105943059 105943073 -18133099 + G-rich Low_complexity Low_complexity 1 14 0 7 1393 231 329 0 0 chr9 105943073 105943146 -18133026 + ID4_ SINE ID 2 74 -9 7 1393 222 295 0 0 chr9 105943146 105943192 -18132980 + G-rich Low_complexity Low_complexity 15 60 0 7 1393 1189 75 0 0 chr9 105944172 105944318 -18131854 + B1_Mm SINE Alu 2 147 0 7 1393 333 250 25 12 chr9 105945382 105945463 -18130709 + MER117 DNA MER1_type 114 195 -2 7 1393 752 249 207 56 chr9 105945558 105946056 -18130116 + RMER15 LTR ERVL 3 575 0 7 1393 574 185 9 27 chr9 105946973 105947084 -18129088 - URR1B DNA MER1_type -116 109 1 7 1393 334 330 42 87 chr9 105947528 105947909 -18128263 + L1MEf LINE L1 1166 1529 -4671 7 1393 508 247 121 24 chr9 105948086 105948252 -18127920 + B3 SINE B2 1 182 -34 7 1393 1259 62 80 0 chr9 105948661 105948837 -18127335 - B2_Mm2 SINE B2 -5 190 1 7 1393 848 273 134 31 chr9 105948890 105949339 -18126833 + Lx8 LINE L1 6967 7453 -20 7 1393 21 0 0 0 chr9 105949470 105949491 -18126681 + AT_rich Low_complexity Low_complexity 1 21 0 7 1393 783 116 18 0 chr9 105949575 105949687 -18126485 + B1F2 SINE Alu 26 139 -10 7 1393 762 89 0 0 chr9 105949688 105949800 -18126372 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 7 1393 455 302 17 8 chr9 105949823 105949943 -18126229 + RSINE1 SINE B4 2 122 -43 7 1393 306 50 0 0 chr9 105949956 105949996 -18126176 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1393 474 232 21 0 chr9 105950484 105950579 -18125593 + PB1D10 SINE Alu 13 109 -8 8 1393 6056 71 28 8 chr9 105950671 105951469 -18124703 + L1_Mus4 LINE L1 5823 6636 0 8 1393 516 233 127 111 chr9 105952273 105952597 -18123575 + L1MA7 LINE L1 5682 6010 -281 8 1393 288 0 0 0 chr9 105952912 105952944 -18123228 + (TCTCTG)n Simple_repeat Simple_repeat 5 36 0 8 1393 737 260 94 56 chr9 105952995 105953337 -18122835 + RLTR12B LTR ERVK 36 390 -138 8 1393 655 334 62 30 chr9 105953423 105953827 -18122345 + LTR16C LTR ERVL 17 433 -56 8 1393 1662 158 115 12 chr9 105954085 105954406 -18121766 + ORR1B1 LTR MaLR 41 394 0 8 1393 654 13 0 0 chr9 105954823 105954898 -18121274 + (TTGG)n Simple_repeat Simple_repeat 2 76 0 8 1393 272 128 0 0 chr9 105954916 105954955 -18121217 - PB1D10 SINE Alu -14 103 65 8 1393 538 282 24 49 chr9 105955074 105955238 -18120934 - RSINE1 SINE B4 -2 163 4 8 1393 382 296 104 64 chr9 105955293 105955495 -18120677 + MLT1G LTR MaLR 331 540 -51 8 1393 382 295 61 18 chr9 105955641 105955755 -18120417 - B4A SINE B4 -173 119 1 8 1393 337 305 83 8 chr9 105956008 105956140 -18120032 + B4A SINE B4 2 143 -149 8 1393 342 0 0 0 chr9 105956262 105956300 -18119872 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1393 357 256 109 102 chr9 105956357 105956555 -18119617 + MER33 DNA MER1_type 45 256 -68 8 1393 6378 31 0 0 chr9 105956555 105957290 -18118882 + L1Md_A LINE L1 5846 6580 -2 8 1393 357 256 109 102 chr9 105957290 105957356 -18118816 + MER33 DNA MER1_type 257 311 -13 8 1393 1151 193 19 9 chr9 105957787 105958001 -18118171 + B3 SINE B2 1 216 0 8 1393 1013 241 42 36 chr9 105958123 105958499 -18117673 - Lx5 LINE L1 -2 7056 6654 8 1393 550 310 118 26 chr9 105958500 105958809 -18117363 + Charlie1b DNA MER1_type 111 454 -69 8 1393 351 0 0 0 chr9 105958809 105958848 -18117324 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1393 550 310 118 26 chr9 105958848 105958886 -18117286 + Charlie1b DNA MER1_type 455 490 -33 8 1393 545 329 58 19 chr9 105958887 105959197 -18116975 + L1MA9 LINE L1 5986 6307 -5 8 1393 1253 34 0 7 chr9 105959890 105960038 -18116134 + B1_Mus2 SINE Alu 1 147 0 8 1393 211 146 62 0 chr9 105960040 105960088 -18116084 + A-rich Low_complexity Low_complexity 1 51 0 8 1393 472 220 22 86 chr9 105960345 105960484 -18115688 + B2_Mm2 SINE B2 66 195 0 8 1393 180 0 0 0 chr9 105960564 105960584 -18115588 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1393 928 251 24 0 chr9 105960908 105961115 -18115057 + ID_B1 SINE B4 2 213 -11 8 1393 396 0 0 0 chr9 105961115 105961159 -18115013 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1393 373 252 170 47 chr9 105961228 105961399 -18114773 + B3A SINE B2 1 192 -3 8 1393 374 312 28 42 chr9 105961578 105961722 -18114450 + B4A SINE B4 87 228 -64 8 1393 690 203 65 0 chr9 105961740 105961878 -18114294 + B1_Mur3 SINE Alu 2 148 -1 8 1393 282 286 59 79 chr9 105961748 105961900 -18114272 + B4A SINE B4 98 246 -46 8 1393 224 29 86 0 chr9 105961900 105961935 -18114237 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 8 1393 447 300 45 0 chr9 105961939 105962049 -18114123 + RSINE1 SINE B4 51 165 0 8 1393 29 60 0 0 chr9 105962056 105962106 -18114066 + AT_rich Low_complexity Low_complexity 1 50 0 8 1393 205 299 117 73 chr9 105962106 105962243 -18113929 + MIRc SINE MIR 3 145 -123 8 1393 202 211 0 0 chr9 105962584 105962622 -18113550 + (CACCAT)n Simple_repeat Simple_repeat 4 41 0 8 1393 246 286 92 85 chr9 105962949 105963079 -18113093 + B1F SINE Alu 2 132 -17 8 1393 305 329 108 32 chr9 105963100 105963257 -18112915 + HAL1-3A_ME LINE L1 2284 2452 -406 8 1393 360 296 65 0 chr9 105963298 105963406 -18112766 - B1F1 SINE Alu -2 147 33 8 1393 237 224 0 0 chr9 105963447 105963505 -18112667 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 8 1393 209 271 0 0 chr9 105963926 105963974 -18112198 + GA-rich Low_complexity Low_complexity 2 49 0 8 1393 241 176 0 42 chr9 105964010 105964081 -18112091 + (TTTA)n Simple_repeat Simple_repeat 4 71 0 8 1393 196 154 0 37 chr9 105964098 105964152 -18112020 + (TA)n Simple_repeat Simple_repeat 1 52 0 8 1393 884 131 43 14 chr9 105964152 105964291 -18111881 - B1_Mus1 SINE Alu -3 145 3 8 1393 727 155 0 0 chr9 105964766 105964882 -18111290 + PB1D9 SINE Alu 5 120 0 8 1393 236 200 0 0 chr9 105965512 105965557 -18110615 + MLT1H LTR MaLR 505 549 0 8 1393 533 224 123 20 chr9 105966270 105966416 -18109756 + RSINE1 SINE B4 4 164 -1 8 1393 262 277 0 57 chr9 105966843 105966931 -18109241 + MIR3 SINE MIR 125 207 -1 8 1393 545 149 84 39 chr9 105967351 105967505 -18108667 + RMER17C LTR ERVK 1 161 -249 8 1393 459 237 0 0 chr9 105967525 105967639 -18108533 + (CA)n Simple_repeat Simple_repeat 1 114 0 8 1393 683 173 71 0 chr9 105967912 105968023 -18108149 + B1_Mur1 SINE Alu 9 121 -28 8 1393 360 0 0 0 chr9 105968023 105968063 -18108109 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1393 683 173 71 0 chr9 105968063 105968078 -18108094 + B1_Mur1 SINE Alu 122 142 -7 8 1393 608 200 66 74 chr9 105968123 105968333 -18107839 + B3 SINE B2 6 216 0 8 1393 278 303 0 13 chr9 105968366 105968443 -18107729 + ID2 SINE ID 2 77 -6 8 1393 438 230 0 0 chr9 105968458 105968606 -18107566 + (TG)n Simple_repeat Simple_repeat 2 149 0 8 1393 576 214 0 0 chr9 105968619 105968797 -18107375 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1393 230 267 0 0 chr9 105969966 105970099 -18106073 + A-rich Low_complexity Low_complexity 1 133 0 8 1393 617 219 89 38 chr9 105970917 105970938 -18105234 + ID_B1 SINE B4 58 222 -2 8 1393 766 169 81 0 chr9 105970938 105971074 -18105098 + B1_Mur1 SINE Alu 1 147 -2 8 1393 1008 138 0 0 chr9 105971075 105971242 -18104930 + (TA)n Simple_repeat Simple_repeat 1 167 0 8 1393 790 277 106 4 chr9 105971909 105972145 -18104027 + RMER5 LTR ERV1 194 453 -81 8 1393 785 192 66 6 chr9 105972147 105972327 -18103845 + ORR1C2 LTR MaLR 1 197 -187 8 1393 236 91 23 0 chr9 105972349 105972393 -18103779 + (TCTCTG)n Simple_repeat Simple_repeat 6 50 0 8 1393 278 212 43 62 chr9 105972400 105972656 -18103516 + RMER17D LTR ERVK 297 547 -342 8 1393 987 210 55 0 chr9 105972552 105972752 -18103420 + ORR1C2 LTR MaLR 174 384 0 8 1393 214 261 0 0 chr9 105973158 105973204 -18102968 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1393 404 224 124 3 chr9 105973833 105973950 -18102222 + ID_B1 SINE B4 85 224 -68 8 1393 186 43 0 0 chr9 105975062 105975085 -18101087 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 8 1393 312 304 13 0 chr9 105975398 105975477 -18100695 + ID_B1 SINE B4 82 161 -63 8 1393 711 0 0 0 chr9 105975481 105975560 -18100612 + (GA)n Simple_repeat Simple_repeat 1 79 0 8 1393 1128 128 0 0 chr9 105975566 105975745 -18100427 + (GAA)n Simple_repeat Simple_repeat 1 179 0 8 1393 351 0 0 0 chr9 105975745 105975784 -18100388 + (GGGAGA)n Simple_repeat Simple_repeat 1 39 0 8 1393 862 239 39 14 chr9 105975784 105975992 -18100180 + B3 SINE B2 4 216 0 8 1393 942 222 61 0 chr9 105976001 105976199 -18099973 + B3 SINE B2 2 211 -5 8 1393 588 74 0 31 chr9 105976749 105976847 -18099325 + (TCC)n Simple_repeat Simple_repeat 2 96 0 8 1393 741 281 14 37 chr9 105976872 105977086 -18099086 - ID_B1 SINE B4 -15 209 1 8 1393 615 185 20 0 chr9 105977946 105978097 -18098075 + CT-rich Low_complexity Low_complexity 1 154 0 8 1393 184 233 180 16 chr9 105978254 105978315 -18097857 - MIR SINE MIR -59 149 79 8 1393 305 291 73 143 chr9 105978320 105978619 -18097553 - RMER10A LTR ERVL -30 412 143 8 1393 189 0 0 0 chr9 105978619 105978640 -18097532 + (GGGGA)n Simple_repeat Simple_repeat 4 24 0 8 1393 305 291 73 143 chr9 105978640 105978765 -18097407 - RMER10A LTR ERVL -300 142 19 8 1393 201 297 39 51 chr9 105978940 105979018 -18097154 - MIRb SINE MIR -179 89 13 8 1393 309 302 84 58 chr9 105978978 105979168 -18097004 + L2c LINE L2 3023 3217 -170 8 1393 974 157 25 75 chr9 105980864 105981064 -18095108 + URR1B DNA MER1_type 5 194 -31 8 1393 1256 41 0 0 chr9 105981374 105981521 -18094651 + B1_Mus2 SINE Alu 1 147 0 8 1393 246 62 0 0 chr9 105981521 105981553 -18094619 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1393 318 336 115 14 chr9 105981772 105981911 -18094261 - MIRb SINE MIR -90 178 26 8 1393 467 262 83 21 chr9 105983380 105983524 -18092648 - RSINE1 SINE B4 -10 155 3 8 1393 334 318 18 35 chr9 105983601 105983715 -18092457 + MER3 DNA MER1_type 65 176 -33 8 1393 992 217 6 0 chr9 105983785 105983965 -18092207 - MTD LTR MaLR -238 181 1 8 1393 1126 156 11 0 chr9 105984232 105984411 -18091761 + MT2A LTR ERVL 1 181 -352 8 1393 882 248 105 15 chr9 105984428 105984694 -18091478 + B4A SINE B4 3 292 0 8 1393 333 118 0 0 chr9 105985058 105985109 -18091063 + (ATG)n Simple_repeat Simple_repeat 1 51 0 8 1393 394 291 27 82 chr9 105985420 105985566 -18090606 + B4 SINE B4 86 223 -69 8 1393 632 301 0 58 chr9 105985578 105985623 -18090549 + RSINE1 SINE B4 3 47 -118 8 1393 2899 44 6 0 chr9 105985623 105985967 -18090205 - ORR1A1 LTR MaLR 0 346 1 8 1393 632 301 0 58 chr9 105985967 105986094 -18090078 + RSINE1 SINE B4 48 165 0 8 1393 264 122 0 0 chr9 105986215 105986256 -18089916 + (TGG)n Simple_repeat Simple_repeat 1 41 0 8 1393 311 225 246 16 chr9 105986803 105986925 -18089247 + MIR SINE MIR 44 193 -69 8 1393 21 0 0 0 chr9 105986931 105986952 -18089220 + AT_rich Low_complexity Low_complexity 1 21 0 8 1393 288 256 35 0 chr9 105987033 105987119 -18089053 + PB1D10 SINE Alu 29 117 0 8 1393 305 174 14 0 chr9 105987175 105987244 -18088928 + GA-rich Low_complexity Low_complexity 1 70 0 8 1393 518 244 25 16 chr9 105987759 105987880 -18088292 + B3 SINE B2 91 212 -4 8 1393 3478 239 116 63 chr9 105987892 105988469 -18087703 + Lx9 LINE L1 6358 6944 -700 9 1393 378 0 0 0 chr9 105988469 105988511 -18087661 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 9 1393 1045 36 0 98 chr9 105988511 105988664 -18087508 - B1_Mus1 SINE Alu -9 139 2 9 1393 3478 239 116 63 chr9 105988664 105989158 -18087014 + Lx9 LINE L1 6945 7470 -174 9 1393 402 21 0 0 chr9 105989158 105989205 -18086967 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1393 3478 239 116 63 chr9 105989205 105989339 -18086833 + Lx9 LINE L1 7471 7627 -17 9 1393 767 284 115 3 chr9 105989360 105989664 -18086508 + Lx8 LINE L1 7134 7471 -2 9 1393 255 211 0 0 chr9 105989687 105989744 -18086428 - BC1_Mm scRNA scRNA -53 99 43 9 1393 414 151 118 109 chr9 105989784 105989903 -18086269 - PB1D9 SINE Alu 0 120 1 9 1393 858 201 28 0 chr9 105990101 105990245 -18085927 + B3A SINE B2 17 164 -34 9 1393 432 0 0 0 chr9 105990246 105990294 -18085878 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1393 386 304 123 54 chr9 105990337 105990436 -18085736 + L1MC4 LINE L1 7168 7267 -775 9 1393 1179 198 106 49 chr9 105990436 105990786 -18085386 + ORR1D2 LTR MaLR 1 370 0 9 1393 386 304 123 54 chr9 105990786 105991075 -18085097 + L1MC4 LINE L1 7268 7583 -459 9 1393 203 203 0 17 chr9 105991107 105991167 -18085005 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1393 1193 71 94 6 chr9 105991804 105991974 -18084198 - B2_Mm2 SINE B2 -8 187 3 9 1393 989 358 63 33 chr9 105992084 105992754 -18083418 + L1M2a LINE L1 1 690 -6478 9 1393 226 236 86 152 chr9 105992762 105992867 -18083305 + MT2B LTR ERVL 156 253 -348 9 1393 462 270 80 9 chr9 105992782 105992894 -18083278 + ID_B1 SINE B4 86 205 -19 9 1393 486 88 0 0 chr9 105992987 105993055 -18083117 + (ATGGTG)n Simple_repeat Simple_repeat 4 71 0 9 1393 529 268 146 52 chr9 105994101 105994388 -18081784 + L2a LINE L2 2472 2785 -634 9 1393 228 182 0 0 chr9 105994560 105994604 -18081568 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1393 822 243 121 23 chr9 105994618 105994883 -18081289 - B4 SINE B4 0 292 2 9 1393 413 285 155 46 chr9 105994915 105995154 -18081018 + L2a LINE L2 2999 3263 -163 9 1393 1117 81 0 0 chr9 105995433 105995569 -18080603 + B1_Mus1 SINE Alu 1 136 -12 9 1393 549 0 0 0 chr9 105995570 105995631 -18080541 + (TAA)n Simple_repeat Simple_repeat 2 62 0 9 1393 871 138 0 78 chr9 105995646 105995788 -18080384 + B1_Mus1 SINE Alu 11 141 -7 9 1393 477 0 0 0 chr9 105995788 105995841 -18080331 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1393 528 175 102 10 chr9 105995846 105995944 -18080228 + B1_Mur3 SINE Alu 26 132 -17 9 1393 513 84 0 0 chr9 105996444 105996515 -18079657 + (GA)n Simple_repeat Simple_repeat 2 72 0 9 1393 476 262 38 53 chr9 105996640 105996773 -18079399 + RSINE1 SINE B4 14 144 -21 9 1393 398 269 9 18 chr9 105996996 105997106 -18079066 + PB1D10 SINE Alu 1 109 -8 9 1393 24 0 0 0 chr9 105997247 105997271 -18078901 + AT_rich Low_complexity Low_complexity 1 24 0 9 1393 920 137 184 16 chr9 105997407 105997592 -18078580 + B3 SINE B2 1 216 0 9 1393 983 225 19 0 chr9 105997622 105997831 -18078341 + B3 SINE B2 4 216 0 9 1393 456 77 0 0 chr9 105997867 105997932 -18078240 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 1393 604 207 0 82 chr9 105998435 105998582 -18077590 + ID_B1 SINE B4 90 224 0 9 1393 1408 194 91 3 chr9 105999715 106000000 -18076172 - MTD LTR MaLR 0 419 110 9 1393 519 165 103 0 chr9 106000002 106000099 -18076073 - MTD LTR MaLR -312 107 1 1 1393 1935 147 40 91 chr9 106000173 106000546 -18075626 - ORR1B1 LTR MaLR 0 394 41 2 1393 256 316 189 40 chr9 106000666 106000867 -18075305 - MLT1J LTR MaLR -237 275 45 3 1393 744 243 135 19 chr9 106001366 106001626 -18074546 + Lx8 LINE L1 6793 7082 -391 4 1393 231 327 207 17 chr9 106001702 106001876 -18074296 - LTR16E1 LTR ERVL -176 362 156 5 1393 208 336 119 56 chr9 106002162 106002288 -18073884 + L2c LINE L2 3249 3382 -5 6 1393 1142 295 108 44 chr9 106002447 106002975 -18073197 + LTR65 LTR ERV1 88 649 -20 7 1393 270 169 0 0 chr9 106003136 106003201 -18072971 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 8 1393 356 103 0 17 chr9 106003306 106003365 -18072807 + (GGA)n Simple_repeat Simple_repeat 2 59 0 9 1393 439 250 58 50 chr9 106003372 106003511 -18072661 - B3A SINE B2 -57 141 2 1 1393 479 286 0 8 chr9 106003514 106003634 -18072538 - PB1D7 SINE Alu 0 120 2 1 1393 228 326 23 23 chr9 106003640 106003728 -18072444 + RLTR25B LTR ERVK 420 507 -521 1 1393 504 211 22 0 chr9 106003654 106003744 -18072428 + B1_Mur1 SINE Alu 34 125 -24 1 1393 204 125 0 0 chr9 106003877 106003909 -18072263 + (CCA)n Simple_repeat Simple_repeat 3 34 0 1 1393 357 188 0 0 chr9 106003906 106003991 -18072181 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 1393 230 192 20 6 chr9 106004960 106005017 -18071155 + B1F2 SINE Alu 5 60 -90 1 1393 1044 160 0 12 chr9 106005022 106005193 -18070979 + (CAGAGA)n Simple_repeat Simple_repeat 2 170 0 1 1393 346 203 31 67 chr9 106005193 106005325 -18070847 + PB1D9 SINE Alu 42 148 -1 1 1393 809 307 0 16 chr9 106005429 106005509 -18070663 + ID SINE ID 2 78 -146 1 1393 305 376 28 7 chr9 106005509 106005651 -18070521 + B1F1 SINE Alu 1 145 -4 1 1393 950 169 198 0 chr9 106005726 106005903 -18070269 + B3 SINE B2 1 212 -4 2 1393 1302 139 46 9 chr9 106006041 106006258 -18069914 + URR1B DNA MER1_type 1 225 0 2 1393 325 387 50 35 chr9 106006303 106006504 -18069668 + LTR82B Low_complexity ERVL 167 370 -460 2 1393 608 257 41 59 chr9 106007094 106007313 -18068859 - RMER15-int LTR ERVL -127 4872 4658 2 1393 794 254 6 24 chr9 106007493 106007662 -18068510 + B3A SINE B2 5 170 -28 2 1393 186 133 0 0 chr9 106007703 106007733 -18068439 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1393 477 374 27 0 chr9 106007758 106007905 -18068267 + RSINE1 SINE B4 15 165 0 2 1393 21 36 0 0 chr9 106007905 106007933 -18068239 + AT_rich Low_complexity Low_complexity 1 28 0 2 1393 1741 21 0 0 chr9 106007941 106008134 -18068038 + B2_Mm1a SINE B2 1 193 0 2 1393 189 0 0 0 chr9 106008134 106008155 -18068017 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1393 2713 37 0 39 chr9 106008407 106008742 -18067430 - RLTRETN_Mm LTR ERVK 0 322 1 3 1393 240 122 0 0 chr9 106009020 106009061 -18067111 + (ATGGTG)n Simple_repeat Simple_repeat 5 45 0 3 1393 2657 144 10 7 chr9 106009251 106009657 -18066515 - MTC LTR MaLR -2 419 13 3 1393 696 335 57 20 chr9 106009666 106009965 -18066207 - RMER15-int LTR ERVL -4499 500 191 2 1393 379 261 76 8 chr9 106009969 106010100 -18066072 - RMER15 LTR ERVL -31 544 405 2 1393 1116 109 0 0 chr9 106010128 106010275 -18065897 + B1_Mus1 SINE Alu 2 148 0 3 1393 474 18 0 0 chr9 106010567 106010622 -18065550 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 3 1393 710 228 0 16 chr9 106010627 106010756 -18065416 - ID_B1 SINE B4 -19 205 79 3 1393 551 311 77 80 chr9 106011052 106011492 -18064680 - LTR37B LTR ERV1 -24 444 6 3 1393 1090 158 0 12 chr9 106011594 106011767 -18064405 + ORR1D1 LTR MaLR 2 172 -202 3 1393 600 103 41 0 chr9 106011755 106011852 -18064320 + ORR1D1 LTR MaLR 274 374 0 3 1393 636 229 84 0 chr9 106011858 106011910 -18064262 + ID_B1 SINE B4 29 91 -133 3 1393 386 242 232 0 chr9 106011910 106012005 -18064167 + PB1D10 SINE Alu 1 117 0 3 1393 326 274 0 21 chr9 106012072 106012169 -18064003 + B3 SINE B2 122 216 0 4 1393 197 434 7 7 chr9 106013107 106013251 -18062921 + MIR SINE MIR 80 223 -39 4 1393 983 213 5 16 chr9 106013493 106013684 -18062488 + B3 SINE B2 28 216 0 4 1393 497 265 53 0 chr9 106013719 106013851 -18062321 - B3A SINE B2 0 198 60 4 1393 431 222 25 167 chr9 106014037 106014100 -18062072 + B1_Mur2 SINE Alu 11 63 -86 4 1393 1135 53 0 0 chr9 106014100 106014232 -18061940 + B1_Mm SINE Alu 4 135 -12 4 1393 1515 52 0 6 chr9 106014232 106014739 -18061433 + (GAA)n Simple_repeat Simple_repeat 1 504 0 4 1393 431 222 25 167 chr9 106014739 106014831 -18061341 + B1_Mur2 SINE Alu 64 147 -2 4 1393 216 374 65 0 chr9 106015802 106015925 -18060247 + MIR SINE MIR 86 216 -46 4 1393 218 212 106 0 chr9 106015962 106016038 -18060134 - L2b LINE L2 -3 3384 3298 4 1393 295 235 0 0 chr9 106016129 106016180 -18059992 - ID4_ SINE ID -17 66 16 4 1393 311 336 151 8 chr9 106016188 106016314 -18059858 - MER5A DNA MER1_type -44 145 2 5 1393 461 257 41 62 chr9 106016326 106016471 -18059701 + B1F2 SINE Alu 8 149 0 5 1393 235 191 2 0 chr9 106016474 106016521 -18059651 + L1MA7 LINE L1 5781 5828 -352 5 1393 465 236 47 60 chr9 106016981 106017130 -18059042 + B3 SINE B2 28 174 -42 5 1393 339 282 47 0 chr9 106017186 106017271 -18058901 + RSINE1 SINE B4 5 93 -72 5 1393 1296 90 17 0 chr9 106017291 106017469 -18058703 + B2_Mm1a SINE B2 2 182 -11 5 1393 180 77 0 0 chr9 106017490 106017516 -18058656 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1393 309 186 5 65 chr9 106017583 106017767 -18058405 + GA-rich Low_complexity Low_complexity 1 173 0 5 1393 431 244 77 0 chr9 106017781 106017968 -18058204 + L1MA7 LINE L1 5826 6037 -254 5 1393 286 308 7 110 chr9 106018449 106018595 -18057577 - MLT1G LTR MaLR -441 150 20 5 1393 1063 112 0 17 chr9 106018690 106018871 -18057301 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 5 1393 359 259 171 20 chr9 106018973 106019119 -18057053 - RMER5 LTR ERV1 -215 319 152 6 1393 514 204 0 10 chr9 106021093 106021192 -18054980 + MTD LTR MaLR 166 263 -156 6 1393 440 279 1 0 chr9 106021277 106021405 -18054767 + L1M3 LINE L1 5471 5598 -591 6 1393 313 163 175 52 chr9 106021399 106021496 -18054676 + Lx9 LINE L1 7120 7228 -416 6 1393 317 274 0 35 chr9 106021496 106021583 -18054589 - MTD LTR MaLR -334 85 2 6 1393 539 267 93 118 chr9 106021587 106021906 -18054266 - L1M2 LINE L1 -1363 4780 4470 6 1393 1501 49 16 0 chr9 106021906 106022091 -18054081 - B2_Mm2 SINE B2 -7 188 1 6 1393 539 267 93 118 chr9 106022091 106022263 -18053909 - L1M2 LINE L1 -1674 4469 4301 6 1393 679 194 96 15 chr9 106022264 106022400 -18053772 - B1_Mur1 SINE Alu -1 148 2 6 1393 441 271 98 110 chr9 106022531 106022822 -18053350 - RLTR18B LTR ERVK -89 527 188 6 1393 639 290 36 114 chr9 106022809 106023089 -18053083 - RLTR18 LTR ERVK -328 288 31 6 1393 1031 206 24 29 chr9 106023103 106023308 -18052864 - B3 SINE B2 -12 204 1 7 1393 618 51 0 0 chr9 106023507 106023585 -18052587 + (CTTTG)n Simple_repeat Simple_repeat 2 79 0 7 1393 1539 199 48 66 chr9 106024365 106024742 -18051430 - ORR1D2 LTR MaLR 0 370 1 7 1393 573 304 114 15 chr9 106024898 106025162 -18051010 - B4A SINE B4 -2 290 1 7 1393 487 135 40 14 chr9 106025280 106025398 -18050774 + B3 SINE B2 1 123 -75 7 1393 255 316 63 40 chr9 106025398 106025437 -18050735 + B4A SINE B4 1 155 -69 7 1393 276 232 146 0 chr9 106025459 106025549 -18050623 + B3 SINE B2 101 205 -11 7 1393 243 0 0 0 chr9 106025550 106025577 -18050595 + (TA)n Simple_repeat Simple_repeat 2 28 0 7 1393 281 294 93 12 chr9 106025734 106025820 -18050352 + PB1D10 SINE Alu 13 105 -12 7 1393 189 0 0 0 chr9 106025821 106025842 -18050330 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 7 1393 402 21 0 0 chr9 106026258 106026305 -18049867 + (TCCTG)n Simple_repeat Simple_repeat 1 47 0 8 1393 910 242 5 52 chr9 106026307 106026520 -18049652 - ID_B1 SINE B4 -18 206 4 8 1393 1757 203 123 87 chr9 106026543 106026983 -18049189 + MT2A LTR ERVL 19 472 -61 8 1393 240 111 0 0 chr9 106026983 106027019 -18049153 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 8 1393 1757 203 123 87 chr9 106027019 106027075 -18049097 + MT2A LTR ERVL 473 533 0 8 1393 362 335 26 26 chr9 106027156 106027312 -18048860 + HAL1-2a_MD LINE L1 2335 2490 -534 8 1393 230 242 19 95 chr9 106027457 106027562 -18048610 + RMER15 LTR ERVL 30 126 -449 8 1393 442 264 139 64 chr9 106027581 106027783 -18048389 + RMER15 LTR ERVL 307 523 -52 8 1393 216 286 26 0 chr9 106027813 106027890 -18048282 + (CACCAT)n Simple_repeat Simple_repeat 1 79 0 8 1393 240 164 0 0 chr9 106028514 106028581 -18047591 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 8 1393 353 320 76 0 chr9 106028581 106028778 -18047394 - L1MA4 LINE L1 -364 5936 5725 8 1393 269 265 119 32 chr9 106028978 106029115 -18047057 - MIR SINE MIR -102 166 16 8 1393 245 301 40 92 chr9 106029839 106029991 -18046181 - MIRc SINE MIR -92 176 34 9 1393 685 75 9 70 chr9 106030469 106030583 -18045589 - B1_Mur3 SINE Alu -1 148 42 9 1393 337 162 0 0 chr9 106030585 106030653 -18045519 + CT-rich Low_complexity Low_complexity 79 146 0 9 1393 215 175 34 34 chr9 106030653 106030712 -18045460 - PB1D9 SINE Alu -61 59 1 9 1393 392 310 135 15 chr9 106031113 106031313 -18044859 + RMER15 LTR ERVL 347 570 -5 9 1393 202 300 0 48 chr9 106031818 106031873 -18044299 - MIRb SINE MIR -43 225 173 9 1393 2450 112 72 19 chr9 106031873 106032247 -18043925 + ORR1B1 LTR MaLR 1 394 0 9 1393 202 300 0 48 chr9 106032247 106032275 -18043897 - MIRb SINE MIR -96 172 146 9 1393 922 251 38 56 chr9 106032284 106032550 -18043622 + B4 SINE B4 12 272 -20 9 1393 338 268 23 13 chr9 106032835 106032940 -18043232 + PB1D10 SINE Alu 12 116 -4 9 1393 777 249 43 24 chr9 106033173 106033383 -18042789 + B3 SINE B2 3 216 0 9 1393 804 109 0 0 chr9 106033387 106033497 -18042675 + B1_Mus1 SINE Alu 1 110 -38 1 1393 696 145 0 0 chr9 106033511 106033628 -18042544 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 1 1393 447 171 24 0 chr9 106034158 106034240 -18041932 - B3 SINE B2 -10 206 123 1 1393 1439 56 45 0 chr9 106034247 106034426 -18041746 + B2_Mm2 SINE B2 2 188 -7 1 1393 802 162 12 209 chr9 106034553 106034725 -18041447 + B3 SINE B2 57 206 -10 1 1393 491 300 17 0 chr9 106034737 106034857 -18041315 + RSINE1 SINE B4 4 125 -40 1 1393 423 0 0 0 chr9 106035147 106035194 -18040978 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1393 805 251 106 31 chr9 106035215 106035441 -18040731 - B4A SINE B4 -48 244 2 1 1393 2332 185 136 14 chr9 106035623 106036123 -18040049 - RMER15 LTR ERVL -14 561 1 1 1393 329 62 21 0 chr9 106036137 106036185 -18039987 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 1 1393 796 226 98 21 chr9 106036232 106036426 -18039746 + B3 SINE B2 7 215 -1 1 174 753 228 157 19 chr9 106037227 106037437 -18038735 + B4 SINE B4 2 240 -52 1 1394 446 261 0 0 chr9 106037602 106037694 -18038478 + PB1D10 SINE Alu 20 111 -6 1 1394 1244 41 0 7 chr9 106037699 106037847 -18038325 + B1_Mus2 SINE Alu 1 147 0 1 1394 267 173 0 0 chr9 106037847 106037899 -18038273 + A-rich Low_complexity Low_complexity 1 52 0 1 1394 1013 215 53 19 chr9 106038058 106038267 -18037905 + B3 SINE B2 1 216 0 1 1394 879 163 0 0 chr9 106038427 106038568 -18037604 + B1_Mur3 SINE Alu 9 149 0 1 1394 248 196 20 0 chr9 106039302 106039353 -18036819 + RMER15 LTR ERVL 2 53 -522 1 1394 1196 63 0 0 chr9 106039356 106039498 -18036674 + B1_Mus2 SINE Alu 1 142 -5 1 1394 200 128 0 25 chr9 106039498 106039538 -18036634 + A-rich Low_complexity Low_complexity 5 43 0 1 1394 1036 246 57 123 chr9 106039572 106039961 -18036211 + RMER15 LTR ERVL 22 384 -191 1 1394 424 208 13 0 chr9 106040327 106040404 -18035768 + ID4_ SINE ID 3 80 -3 1 1394 380 196 235 10 chr9 106040471 106040569 -18035603 - B1F SINE Alu -3 146 27 1 1394 548 246 88 83 chr9 106040594 106040811 -18035361 - ID_B1 SINE B4 0 224 7 1 1394 588 289 25 6 chr9 106040839 106040999 -18035173 - B4 SINE B4 -4 288 126 1 1394 246 220 0 0 chr9 106041009 106041068 -18035104 + CT-rich Low_complexity Low_complexity 1 59 0 1 1394 588 245 36 0 chr9 106041075 106041214 -18034958 - B4 SINE B4 -148 144 1 1 1394 180 0 0 0 chr9 106041228 106041248 -18034924 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1394 987 111 21 0 chr9 106041266 106041410 -18034762 - B1_Mus1 SINE Alu -1 147 1 1 1394 432 104 0 0 chr9 106042599 106042666 -18033506 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1394 346 328 86 8 chr9 106042925 106043042 -18033130 + PB1 SINE Alu 1 126 -1 1 1394 332 217 29 0 chr9 106043050 106043119 -18033053 + ID4 SINE ID 2 72 -11 1 1394 643 108 8 8 chr9 106043153 106043274 -18032898 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 1394 592 286 50 0 chr9 106043277 106043438 -18032734 - B3A SINE B2 -28 170 2 1 1394 814 253 95 0 chr9 106043454 106043644 -18032528 - B3 SINE B2 -8 208 1 1 1394 271 250 54 0 chr9 106043670 106043726 -18032446 + B4A SINE B4 219 277 -15 1 1394 194 332 125 36 chr9 106043959 106044240 -18031932 + L2 LINE L2 2359 2664 -755 1 1394 250 245 0 0 chr9 106044254 106044307 -18031865 + L2 LINE L2 2838 2890 -529 1 1394 210 234 5 35 chr9 106045023 106045080 -18031092 + MIRb SINE MIR 113 174 -94 1 1394 218 167 48 0 chr9 106045222 106045264 -18030908 + CT-rich Low_complexity Low_complexity 2 45 0 1 1394 910 68 0 8 chr9 106045265 106045383 -18030789 - B1_Mus1 SINE Alu 0 148 32 1 1394 721 158 110 0 chr9 106045393 106045520 -18030652 - B1_Mus1 SINE Alu -7 141 1 1 1394 825 169 236 0 chr9 106045831 106046009 -18030163 + URR1A DNA MER1_type 7 226 0 1 1394 287 347 38 43 chr9 106046009 106046048 -18030124 - CYRA11_Mm Unknown Y-chromosome -444 173 136 1 1394 333 0 0 0 chr9 106047517 106047554 -18028618 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1394 641 233 42 0 chr9 106047579 106047699 -18028473 - RSINE1 SINE B4 -39 126 2 1 1394 246 236 277 11 chr9 106047784 106047878 -18028294 + PB1D9 SINE Alu 1 119 -1 1 1394 327 49 0 0 chr9 106048126 106048167 -18028005 + (CCTG)n Simple_repeat Simple_repeat 3 43 0 1 1394 871 222 79 20 chr9 106048569 106048771 -18027401 + B3 SINE B2 2 215 -1 1 1394 661 284 0 0 chr9 106048791 106048939 -18027233 + B1F SINE Alu 1 148 -1 1 1394 346 250 104 0 chr9 106049064 106049160 -18027012 + B1F SINE Alu 38 143 -6 1 1394 315 71 0 0 chr9 106049173 106049215 -18026957 + (GGA)n Simple_repeat Simple_repeat 2 43 0 1 1394 594 273 92 50 chr9 106049224 106049507 -18026665 + B4A SINE B4 4 292 0 1 1394 323 294 0 0 chr9 106049517 106049585 -18026587 + ID4_ SINE ID 2 69 -14 1 1394 200 132 0 26 chr9 106049586 106049625 -18026547 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1 1394 208 331 0 57 chr9 106050691 106050832 -18025340 + C-rich Low_complexity Low_complexity 5 137 0 1 1394 370 300 0 16 chr9 106050874 106050996 -18025176 + CT-rich Low_complexity Low_complexity 2 121 0 1 1394 949 257 9 13 chr9 106052964 106053189 -18022983 + ID_B1 SINE B4 1 224 0 1 1394 813 216 169 16 chr9 106053391 106053575 -18022597 - B3 SINE B2 -4 212 1 1 1394 449 212 60 26 chr9 106053980 106054096 -18022076 + PB1D9 SINE Alu 1 120 0 1 1394 733 129 47 0 chr9 106054188 106054359 -18021813 + GA-rich Low_complexity Low_complexity 1 179 0 1 1394 220 71 71 0 chr9 106054361 106054403 -18021769 + (GGGA)n Simple_repeat Simple_repeat 3 47 0 1 1394 195 388 77 53 chr9 106054803 106054972 -18021200 + MIR3 SINE MIR 9 181 -27 1 1394 314 237 79 0 chr9 106055213 106055289 -18020883 - ID4_ SINE ID 0 83 2 1 1394 432 97 0 0 chr9 106055292 106055354 -18020818 + (CTG)n Simple_repeat Simple_repeat 1 62 0 1 1394 947 102 7 28 chr9 106055361 106055502 -18020670 - B1_Mur4 SINE Alu -11 139 2 1 1394 397 219 106 30 chr9 106055514 106055646 -18020526 - B1F SINE Alu -7 142 1 1 1394 311 265 15 0 chr9 106059071 106059139 -18017033 + ID SINE ID 15 83 -141 1 1394 276 212 42 83 chr9 106061257 106061329 -18014843 - tRNA-Ala-GCY_ tRNA tRNA -4 71 3 1 1394 275 242 111 22 chr9 106061957 106062092 -18014080 - MER53 DNA hAT -1 192 46 1 1394 198 0 0 0 chr9 106063029 106063051 -18013121 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1394 394 297 33 0 chr9 106063074 106063165 -18013007 - PB1D7 SINE Alu -15 105 12 1 1394 278 283 31 110 chr9 106063079 106063206 -18012966 - MT2B2 LTR ERVL -331 253 137 1 1394 932 41 0 8 chr9 106063362 106063484 -18012688 + (GAAA)n Simple_repeat Simple_repeat 3 123 0 1 1394 1557 32 27 0 chr9 106063557 106063744 -18012428 + B2_Mm2 SINE B2 1 192 -3 1 1394 774 195 147 17 chr9 106063893 106064070 -18012102 + B3 SINE B2 2 201 -15 1 1394 839 256 96 0 chr9 106064099 106064298 -18011874 + ID_B1 SINE B4 2 219 -5 1 1394 740 216 76 57 chr9 106064303 106064514 -18011658 + B3 SINE B2 1 215 -1 1 1394 402 263 13 0 chr9 106064523 106064599 -18011573 + B4 SINE B4 216 292 0 1 1394 1425 68 16 10 chr9 106064607 106064800 -18011372 + B2_Mm2 SINE B2 2 195 0 1 1394 664 306 159 23 chr9 106064807 106064979 -18011193 - MLT1A1 LTR MaLR -115 293 88 1 1394 260 0 0 54 chr9 106064979 106065016 -18011156 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 1394 622 203 106 0 chr9 106065016 106065139 -18011033 - B1_Mur2 SINE Alu -13 136 1 1 1394 664 306 159 23 chr9 106065139 106065223 -18010949 - MLT1A1 LTR MaLR -321 87 2 1 1394 226 268 70 0 chr9 106065260 106065331 -18010841 + RMER5 LTR ERV1 32 107 -427 1 1394 719 236 29 64 chr9 106065399 106065603 -18010569 - B3A SINE B2 0 198 2 1 1394 225 162 0 0 chr9 106065646 106065683 -18010489 - B1F SINE Alu -71 78 42 1 1394 704 313 110 47 chr9 106065708 106066090 -18010082 + RMER5 LTR ERV1 127 532 -2 1 1394 1291 27 0 0 chr9 106066140 106066287 -18009885 + B1_Mm SINE Alu 1 147 0 1 1394 483 294 0 53 chr9 106066333 106066502 -18009670 - RSINE1 SINE B4 -3 162 3 1 1394 467 235 71 35 chr9 106066639 106066780 -18009392 + B1F2 SINE Alu 4 149 0 1 1394 1105 101 93 23 chr9 106066799 106066971 -18009201 - B2_Mm1a SINE B2 -7 186 3 1 1394 563 193 31 28 chr9 106066989 106067244 -18008928 + GA-rich Low_complexity Low_complexity 1 255 0 1 1394 570 287 21 7 chr9 106067329 106067473 -18008699 + ID_B1 SINE B4 2 147 -77 1 1394 586 214 89 0 chr9 106067622 106067734 -18008438 + B1_Mur3 SINE Alu 7 128 -21 1 1394 1020 168 80 10 chr9 106067739 106067938 -18008234 + B3 SINE B2 2 214 -2 1 1394 25 0 0 0 chr9 106067938 106067963 -18008209 + AT_rich Low_complexity Low_complexity 1 25 0 1 1394 232 264 97 0 chr9 106067980 106068052 -18008120 - MER2 DNA MER2_type -26 319 241 1 1394 390 212 131 0 chr9 106068054 106068153 -18008019 - PB1D9 SINE Alu -7 113 2 1 1394 359 117 22 33 chr9 106068545 106068653 -18007519 - B2_Mm2 SINE B2 -2 193 47 1 1394 1291 90 6 17 chr9 106068718 106068899 -18007273 - B2_Mm1t SINE B2 -14 179 1 1 1394 341 342 73 7 chr9 106068901 106069051 -18007121 - MER2 DNA MER2_type -153 192 33 1 1394 254 200 0 0 chr9 106069356 106069401 -18006771 + GA-rich Low_complexity Low_complexity 3 47 0 1 1394 485 313 26 13 chr9 106069428 106069580 -18006592 - RSINE1 SINE B4 -8 157 4 1 1394 315 164 0 0 chr9 106069581 106069642 -18006530 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 1 1394 998 171 12 6 chr9 106069676 106069847 -18006325 - RMER10A LTR ERVL -270 172 1 1 1394 360 0 0 0 chr9 106070123 106070163 -18006009 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1394 1139 120 18 0 chr9 106070517 106070684 -18005488 - B2_Mm2 SINE B2 -14 181 12 2 1394 276 102 0 0 chr9 106070792 106070841 -18005331 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1394 1705 26 0 0 chr9 106071071 106071263 -18004909 + B2_Mm1a SINE B2 2 193 0 2 1394 1549 62 0 10 chr9 106071334 106071529 -18004643 - B2_Mm1a SINE B2 0 193 1 2 1394 198 0 0 0 chr9 106071561 106071583 -18004589 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1394 255 325 79 83 chr9 106071728 106071956 -18004216 - RMER5 LTR ERV1 -78 456 230 2 1394 21 36 0 0 chr9 106073492 106073520 -18002652 + GC_rich Low_complexity Low_complexity 1 28 0 2 1394 333 231 96 96 chr9 106074423 106074538 -18001634 + PB1D10 SINE Alu 3 117 0 2 1394 323 185 275 9 chr9 106075501 106075610 -18000562 + B3 SINE B2 2 139 -77 2 1394 1175 95 55 11 chr9 106075610 106075791 -18000381 + B2_Mm2 SINE B2 5 193 -2 2 1394 911 243 5 33 chr9 106075814 106076027 -18000145 + B3 SINE B2 1 207 -9 2 1394 383 296 54 27 chr9 106076347 106076496 -17999676 - RSINE1 SINE B4 -10 155 3 2 1394 279 133 0 0 chr9 106076636 106076681 -17999491 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1394 401 197 202 57 chr9 106076690 106076814 -17999358 - ID_B1 SINE B4 -4 220 79 2 1394 287 300 25 0 chr9 106077078 106077158 -17999014 - ID4 SINE ID 0 83 2 2 1394 503 276 0 37 chr9 106077668 106077777 -17998395 - PB1D7 SINE Alu -15 105 1 2 1394 368 299 25 8 chr9 106077881 106077999 -17998173 + PB1D9 SINE Alu 1 120 0 2 1394 446 305 78 0 chr9 106078497 106078625 -17997547 + ID_B1 SINE B4 79 216 -8 2 1394 267 292 0 0 chr9 106078763 106078828 -17997344 + B3A SINE B2 1 65 -133 2 1394 305 349 0 0 chr9 106079401 106079487 -17996685 + PB1D10 SINE Alu 1 86 -31 2 1394 543 31 0 0 chr9 106079498 106079563 -17996609 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1394 775 229 49 0 chr9 106080208 106080391 -17995781 - B3A SINE B2 -3 195 4 2 1394 735 257 35 55 chr9 106080405 106080607 -17995565 - B3A SINE B2 0 198 1 2 1394 488 228 98 45 chr9 106080615 106080748 -17995424 - B1_Mur1 SINE Alu -8 141 2 2 1394 21 0 0 0 chr9 106080960 106080981 -17995191 + AT_rich Low_complexity Low_complexity 1 21 0 2 1394 701 245 7 0 chr9 106081519 106081662 -17994510 + B1F SINE Alu 1 144 -5 2 1394 238 269 25 13 chr9 106081934 106082013 -17994159 - ID4_ SINE ID -3 80 1 2 1394 213 121 0 0 chr9 106082043 106082076 -17994096 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1394 910 203 133 5 chr9 106082079 106082267 -17993905 - B3 SINE B2 -4 212 1 2 1394 247 387 0 0 chr9 106082584 106082659 -17993513 - ID4_ SINE ID -8 75 1 2 1394 473 176 38 38 chr9 106083200 106083306 -17992866 + PB1D9 SINE Alu 2 107 -13 2 1394 332 288 0 0 chr9 106083339 106083412 -17992760 + ID4_ SINE ID 1 73 -10 2 1394 485 247 85 122 chr9 106083706 106083895 -17992277 - B4 SINE B4 0 292 111 2 1394 587 152 181 0 chr9 106083797 106083902 -17992270 - B1_Mur4 SINE Alu -7 143 20 2 1394 785 179 67 0 chr9 106084273 106084407 -17991765 + B1_Mur3 SINE Alu 5 147 -2 2 1394 425 290 14 0 chr9 106084430 106084568 -17991604 + B1F SINE Alu 1 140 -9 2 1394 440 202 13 33 chr9 106084893 106085037 -17991135 - L1MB7 LINE L1 -28 6146 6007 2 1394 570 266 113 20 chr9 106085053 106085345 -17990827 - L1MB7 LINE L1 -246 5938 5620 2 1394 384 237 29 3 chr9 106085404 106085511 -17990661 - B1_Mur1 SINE Alu 0 149 34 2 1394 249 267 58 33 chr9 106085560 106085680 -17990492 - L1M5 LINE L1 -618 5546 5424 2 1394 498 184 27 27 chr9 106086707 106086819 -17989353 + PB1D9 SINE Alu 2 113 -7 2 1394 22 35 0 0 chr9 106087363 106087392 -17988780 + AT_rich Low_complexity Low_complexity 1 29 0 2 1394 300 300 147 44 chr9 106087750 106087886 -17988286 - RSINE1 SINE B4 -15 150 1 2 1394 437 185 36 144 chr9 106087890 106087972 -17988200 - ID_B1 SINE B4 -6 218 143 2 1394 1653 26 16 0 chr9 106087972 106088162 -17988010 - B2_Mm1a SINE B2 0 193 1 2 1394 437 158 48 58 chr9 106088162 106088229 -17987943 - ID_B1 SINE B4 -145 147 87 2 1394 312 296 49 0 chr9 106088450 106088531 -17987641 + B1F SINE Alu 38 122 -27 2 1394 856 88 88 0 chr9 106089049 106089174 -17986998 + B1_Mus1 SINE Alu 7 142 -6 2 1394 318 237 97 69 chr9 106089052 106089197 -17986975 + B4 SINE B4 94 242 -50 2 1394 341 267 99 0 chr9 106089670 106089771 -17986401 - PB1D9 SINE Alu -9 111 1 2 1394 498 312 39 8 chr9 106089788 106089892 -17986280 - RSINE1 SINE B4 -4 161 54 2 1394 382 294 49 0 chr9 106089892 106089994 -17986178 + PB1D10 SINE Alu 1 107 -10 2 1394 502 308 19 142 chr9 106090352 106090564 -17985608 + ID_B1 SINE B4 20 205 -19 2 1394 232 241 119 0 chr9 106092608 106092679 -17983493 - MIRc SINE MIR -114 154 72 2 1394 393 272 170 52 chr9 106093250 106093479 -17982693 - L1ME4a LINE L1 -73 6051 5796 2 1394 381 333 54 13 chr9 106094017 106094166 -17982006 + RSINE1 SINE B4 7 161 -4 2 1394 898 125 7 53 chr9 106095873 106096025 -17980147 - B1_Mur4 SINE Alu -1 149 5 2 1394 1489 53 37 0 chr9 106096084 106096271 -17979901 + B2_Mm2 SINE B2 2 195 0 2 1394 367 307 78 9 chr9 106096309 106096424 -17979748 + B1F SINE Alu 13 135 -14 2 1394 788 134 55 8 chr9 106097128 106097256 -17978916 + B1_Mur3 SINE Alu 3 136 -13 2 1394 279 0 0 0 chr9 106100665 106100696 -17975476 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1394 874 239 23 23 chr9 106100714 106100932 -17975240 - B4A SINE B4 -56 236 19 2 1394 21 0 0 0 chr9 106101267 106101288 -17974884 + GC_rich Low_complexity Low_complexity 1 21 0 2 1394 185 286 0 0 chr9 106101715 106101757 -17974415 - MIR SINE MIR -63 145 104 2 1394 501 254 336 14 chr9 106102879 106103162 -17973010 - MTEa LTR MaLR -4 375 2 2 1394 1277 96 5 46 chr9 106103390 106103421 -17972751 - B2_Mm1a SINE B2 -5 188 164 2 1394 393 22 0 0 chr9 106103421 106103467 -17972705 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 2 1394 1277 96 5 46 chr9 106103467 106103631 -17972541 - B2_Mm1a SINE B2 -30 163 1 2 1394 367 294 20 0 chr9 106103643 106103745 -17972427 - ID_B1 SINE B4 0 224 121 2 1394 410 94 16 0 chr9 106103745 106103809 -17972363 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1394 186 43 0 0 chr9 106103851 106103874 -17972298 + (TTTC)n Simple_repeat Simple_repeat 3 25 0 2 1394 259 290 136 29 chr9 106103876 106103979 -17972193 - PB1D10 SINE Alu -3 114 1 2 1394 282 330 48 48 chr9 106103979 106104052 -17972120 - B4A SINE B4 -206 86 14 2 1394 690 13 0 0 chr9 106104186 106104265 -17971907 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 1394 264 302 58 143 chr9 106104266 106104455 -17971717 - B4A SINE B4 -112 180 8 2 1394 22 70 0 0 chr9 106104466 106104509 -17971663 + AT_rich Low_complexity Low_complexity 1 43 0 2 1394 765 184 208 0 chr9 106104511 106104679 -17971493 - B3 SINE B2 -13 203 1 2 1394 744 59 0 0 chr9 106105028 106105130 -17971042 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1394 270 0 0 0 chr9 106107028 106107058 -17969114 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1394 441 0 0 0 chr9 106107514 106107563 -17968609 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1394 244 213 271 21 chr9 106107660 106107756 -17968416 - MIRb SINE MIR -85 183 60 2 1394 1207 68 0 0 chr9 106107816 106107963 -17968209 + B1_Mus1 SINE Alu 2 148 0 2 1394 216 238 0 0 chr9 106108755 106108818 -17967354 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1394 540 141 58 8 chr9 106109633 106110012 -17966160 + (TG)n Simple_repeat Simple_repeat 1 398 0 2 1394 441 137 71 0 chr9 106110025 106110193 -17965979 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1394 211 93 47 0 chr9 106110219 106110262 -17965910 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1394 254 48 71 0 chr9 106111068 106111110 -17965062 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 2 1394 1210 62 7 0 chr9 106111110 106111255 -17964917 - B1_Mus2 SINE Alu 0 147 2 2 1394 751 238 58 11 chr9 106111338 106111512 -17964660 - B3A SINE B2 -16 182 1 2 1394 308 227 34 16 chr9 106111544 106111621 -17964551 + B1F1 SINE Alu 1 88 -29 2 1394 498 202 70 10 chr9 106111651 106111751 -17964421 + ID_B1 SINE B4 118 223 -1 2 1394 343 284 0 0 chr9 106111804 106111892 -17964280 - RSINE1 SINE B4 -76 89 2 2 1394 1000 239 5 14 chr9 106111922 106112134 -17964038 + B3 SINE B2 3 212 -4 2 1394 926 42 0 0 chr9 106112153 106112273 -17963899 + B1_Mus2 SINE Alu 28 147 0 2 1394 426 314 97 35 chr9 106112661 106112806 -17963366 + RSINE1 SINE B4 4 157 -8 2 1394 213 194 0 0 chr9 106112831 106112867 -17963305 + (ATG)n Simple_repeat Simple_repeat 2 37 0 2 1394 355 274 53 0 chr9 106112882 106112977 -17963195 + PB1D10 SINE Alu 12 111 -6 2 1394 360 259 0 12 chr9 106112986 106113068 -17963104 + ID4 SINE ID 1 81 -2 2 1394 350 244 43 150 chr9 106113075 106113141 -17963031 + ID_B1 SINE B4 91 152 -72 2 1394 1220 49 0 0 chr9 106113141 106113284 -17962888 + B1_Mus2 SINE Alu 5 147 0 2 1394 350 244 43 150 chr9 106113284 106113357 -17962815 + ID_B1 SINE B4 153 215 -9 2 1394 405 284 0 27 chr9 106113395 106113507 -17962665 + PB1D10 SINE Alu 9 117 0 2 1394 339 274 82 36 chr9 106114848 106114958 -17961214 + ID_B1 SINE B4 110 224 0 2 1394 1021 216 17 68 chr9 106115532 106115766 -17960406 + ID_B1 SINE B4 3 224 0 2 1394 783 163 89 0 chr9 106115772 106115907 -17960265 + B1_Mus2 SINE Alu 1 147 0 2 1394 303 196 0 0 chr9 106117840 106117896 -17958276 - MLT1D LTR MaLR 0 505 450 3 1394 219 208 0 70 chr9 106117903 106117960 -17958212 + PB1D10 SINE Alu 65 117 0 3 1394 1201 87 47 42 chr9 106118169 106118361 -17957811 - B2_Mm2 SINE B2 -1 194 2 3 1394 474 280 0 0 chr9 106118364 106118471 -17957701 - PB1D7 SINE Alu -13 107 1 3 1394 645 260 254 0 chr9 106118502 106118675 -17957497 - ID_B1 SINE B4 -7 217 1 3 1394 770 211 13 13 chr9 106118828 106118977 -17957195 - B1_Mur1 SINE Alu 0 149 1 3 1394 593 0 28 0 chr9 106119600 106119672 -17956500 + (TTCA)n Simple_repeat Simple_repeat 2 75 0 3 1394 236 362 15 38 chr9 106119752 106119884 -17956288 - L2a LINE L2 -70 3356 3228 3 1394 1443 73 5 20 chr9 106119997 106120193 -17955979 - B2_Mm1t SINE B2 0 193 1 3 1394 320 174 29 0 chr9 106120203 106120272 -17955900 - PB1D10 SINE Alu -5 112 42 3 1394 838 234 148 3 chr9 106120422 106120720 -17955452 - RMER20B LTR ERVK -36 480 147 3 1394 4331 113 58 16 chr9 106120901 106120945 -17955227 + RMER6A LTR ERVK 1 46 -710 3 1394 180 0 0 0 chr9 106120945 106120965 -17955207 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1394 4331 113 58 16 chr9 106120965 106121646 -17954526 + RMER6A LTR ERVK 47 755 -1 3 1394 1100 209 15 0 chr9 106121695 106121891 -17954281 + B3 SINE B2 5 203 -13 3 1394 2221 80 94 0 chr9 106121938 106122237 -17953935 - ORR1A2 LTR MaLR 0 327 1 3 1394 266 250 16 0 chr9 106122544 106122608 -17953564 - RLTR18 LTR ERVK 0 616 552 3 1394 1130 62 7 14 chr9 106122642 106122789 -17953383 + B1_Mm SINE Alu 2 147 0 3 1394 639 294 78 45 chr9 106122804 106123116 -17953056 - RLTR18 LTR ERVK -45 571 111 3 1394 548 280 0 57 chr9 106123505 106123664 -17952508 - RLTR18 LTR ERVK -465 151 2 3 1394 1623 251 61 109 chr9 106123667 106123694 -17952478 + RMER15 LTR ERVL 27 52 -523 3 1394 367 196 324 9 chr9 106123694 106123802 -17952370 + B1_Mus2 SINE Alu 5 146 -1 3 1394 1623 251 61 109 chr9 106123802 106124351 -17951821 + RMER15 LTR ERVL 53 575 0 3 1394 441 36 0 0 chr9 106129206 106129261 -17946911 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 3 1394 489 147 18 9 chr9 106129597 106129707 -17946465 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 1394 1096 267 24 14 chr9 106129726 106130015 -17946157 - B4 SINE B4 0 292 1 3 1394 247 284 19 136 chr9 106130015 106130170 -17946002 + RMER30 DNA MER1_type 7 143 -59 3 1394 244 270 39 39 chr9 106130358 106130435 -17945737 - PB1D9 SINE Alu -43 77 1 3 1394 446 287 27 40 chr9 106130619 106130768 -17945404 + RMER5 LTR ERV1 58 204 -330 3 1394 700 147 116 0 chr9 106130906 106131035 -17945137 - B1_Mur2 SINE Alu 0 149 6 3 1394 842 77 124 51 chr9 106131046 106131183 -17944989 - B1_Mus1 SINE Alu 0 148 2 3 1394 613 218 45 65 chr9 106131189 106131390 -17944782 + RMER5 LTR ERV1 338 534 0 3 1394 413 158 12 0 chr9 106131511 106131593 -17944579 + CT-rich Low_complexity Low_complexity 4 86 0 3 1394 733 193 43 7 chr9 106131596 106131737 -17944435 - B1_Mur1 SINE Alu -3 146 1 3 1394 1263 114 23 0 chr9 106131930 106132106 -17944066 + B2_Mm2 SINE B2 2 181 -14 3 1394 336 126 68 0 chr9 106132149 106132217 -17943955 + B2_Mm2 SINE B2 47 121 -95 3 1394 891 0 0 0 chr9 106132243 106132342 -17943830 + (GAA)n Simple_repeat Simple_repeat 2 100 0 3 1394 285 29 0 0 chr9 106132565 106132599 -17943573 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1394 1026 251 40 22 chr9 106132984 106133261 -17942911 - B4 SINE B4 -7 285 4 3 1394 206 354 91 32 chr9 106133988 106134175 -17941997 - L2b LINE L2 -1 3374 3177 3 1394 469 141 0 0 chr9 106134621 106134699 -17941473 - PB1D9 SINE Alu -1 119 42 3 1394 333 310 43 0 chr9 106136580 106136696 -17939476 + L1MB7 LINE L1 5647 5767 -411 3 1394 313 276 9 9 chr9 106136919 106137025 -17939147 + L1MB7 LINE L1 6069 6174 -10 3 1394 886 49 195 0 chr9 106138274 106138397 -17937775 + B1_Mm SINE Alu 1 147 0 3 1394 244 307 0 64 chr9 106140171 106140184 -17935988 + ID_B1 SINE B4 137 224 0 3 1394 321 256 0 37 chr9 106140184 106140265 -17935907 + B1F SINE Alu 72 149 0 3 1394 232 211 17 17 chr9 106141323 106141381 -17934791 + tRNA-Ala-GCG tRNA tRNA 11 68 -7 3 1394 374 188 129 0 chr9 106141443 106141528 -17934644 + PB1D10 SINE Alu 22 117 0 3 1394 788 162 6 0 chr9 106142253 106142420 -17933752 + (CA)n Simple_repeat Simple_repeat 2 169 0 3 1394 478 263 25 42 chr9 106142424 106142543 -17933629 + ID_B1 SINE B4 2 118 -106 3 1394 357 24 0 0 chr9 106142562 106142604 -17933568 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1394 686 212 80 0 chr9 106142652 106142789 -17933383 - B1F2 SINE Alu 0 149 2 3 1394 23 33 0 0 chr9 106142790 106142820 -17933352 + AT_rich Low_complexity Low_complexity 1 30 0 3 1394 256 267 0 26 chr9 106143027 106143104 -17933068 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1394 254 251 37 23 chr9 106143106 106143209 -17932963 - B4A SINE B4 -1 291 182 3 1394 296 223 13 26 chr9 106143231 106143308 -17932864 + RSINE1 SINE B4 8 84 -208 3 1394 182 278 0 0 chr9 106143726 106143762 -17932410 + MIRb SINE MIR 48 83 -185 3 1394 1045 213 10 5 chr9 106144191 106144389 -17931783 + B3 SINE B2 9 207 -9 3 1394 383 233 146 0 chr9 106144415 106144518 -17931654 + PB1D9 SINE Alu 3 120 0 3 1394 294 235 37 0 chr9 106144635 106144716 -17931456 - PB1D10 SINE Alu 0 117 34 3 1394 346 294 67 0 chr9 106144861 106144980 -17931192 - B1_Mus1 SINE Alu -18 130 4 3 1394 1429 64 21 26 chr9 106145986 106146178 -17929994 - B2_Mm2 SINE B2 -4 191 1 3 1394 277 162 235 12 chr9 106146197 106146278 -17929894 - PB1D10 SINE Alu -5 112 14 3 1394 1722 16 0 20 chr9 106146346 106146543 -17929629 - B2_Mm1a SINE B2 0 193 1 3 1394 1123 113 43 11 chr9 106146687 106146840 -17929332 + B2_Mm2 SINE B2 2 154 -41 3 1394 666 0 0 0 chr9 106146840 106146914 -17929258 + (TAAAA)n Simple_repeat Simple_repeat 5 78 0 3 1394 1123 113 43 11 chr9 106146914 106146947 -17929225 + B2_Mm2 SINE B2 155 194 -1 3 1394 840 128 0 0 chr9 106146947 106147080 -17929092 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 3 1394 550 199 92 12 chr9 106147762 106147925 -17928247 + L1MB3 LINE L1 5968 6143 -40 3 1394 365 205 0 170 chr9 106147938 106147981 -17928191 + B1F SINE Alu 11 53 -96 3 1394 1633 37 11 0 chr9 106147981 106148172 -17928000 + B2_Mm1a SINE B2 1 193 0 3 1394 365 228 0 169 chr9 106148172 106148254 -17927918 + B1F SINE Alu 54 115 -5 3 1394 699 99 0 0 chr9 106148293 106148394 -17927778 + (TA)n Simple_repeat Simple_repeat 1 101 0 3 1394 1128 161 94 0 chr9 106148437 106148629 -17927543 + B3 SINE B2 1 210 -6 3 1394 392 287 156 0 chr9 106148667 106148789 -17927383 + B1F SINE Alu 1 141 -8 3 1394 670 295 62 19 chr9 106150906 106151117 -17925055 - ID_B1 SINE B4 -3 221 2 3 1394 335 233 37 46 chr9 106151125 106151233 -17924939 - PB1D10 SINE Alu -2 115 9 3 1394 3272 139 7 73 chr9 106151339 106151904 -17924268 - RLTR24 LTR ERV1 -1 528 1 3 1394 265 249 10 29 chr9 106152352 106152451 -17923721 + MIRc SINE MIR 88 186 -82 3 1394 226 219 0 0 chr9 106153397 106153438 -17922734 + C-rich Low_complexity Low_complexity 2 42 0 3 1394 236 272 12 58 chr9 106153790 106153876 -17922296 + BC1_Mm scRNA scRNA 17 98 -54 3 1394 1572 153 156 71 chr9 106154218 106154500 -17921672 + RLTR14 LTR ERV1 1 321 -61 3 1394 489 34 0 0 chr9 106154500 106154559 -17921613 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 3 1394 1402 62 17 17 chr9 106154559 106154740 -17921432 - B2_Mm2 SINE B2 -14 181 1 3 1394 1572 153 156 71 chr9 106154740 106154808 -17921364 + RLTR14 LTR ERV1 322 381 -1 3 1394 583 258 8 0 chr9 106155071 106155203 -17920969 + RSINE1 SINE B4 4 136 -29 3 1394 494 201 35 72 chr9 106155254 106155446 -17920726 + RMER19B LTR ERVK 1 175 -562 3 1394 542 212 31 82 chr9 106155419 106155578 -17920594 + B4A SINE B4 71 221 -71 3 1394 1021 57 0 34 chr9 106155438 106155584 -17920588 + B1_Mus2 SINE Alu 7 147 0 3 1394 550 211 45 0 chr9 106155602 106155735 -17920437 + RMER19B LTR ERVK 118 256 -646 3 1394 455 151 97 0 chr9 106155739 106155832 -17920340 - RMER19B LTR ERVK -800 102 1 3 1394 206 239 0 0 chr9 106155958 106155987 -17920185 + T-rich Low_complexity Low_complexity 18 46 0 3 1394 1248 34 0 7 chr9 106155987 106156134 -17920038 - B1_Mm SINE Alu 0 147 2 3 1394 206 239 0 0 chr9 106156134 106156150 -17920022 + T-rich Low_complexity Low_complexity 2 17 0 3 1394 254 155 3 119 chr9 106156157 106156240 -17919932 - B1_Mus1 SINE Alu -73 75 1 3 1394 501 92 0 0 chr9 106156261 106156337 -17919835 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1394 239 171 0 0 chr9 106156340 106156381 -17919791 - RSINE1 SINE B4 -114 51 11 3 1394 324 202 0 161 chr9 106156717 106156847 -17919325 + MT2B LTR ERVL 156 264 -337 3 1394 640 115 10 0 chr9 106156754 106156850 -17919322 + B1_Mur3 SINE Alu 21 117 -32 3 1394 3465 38 5 0 chr9 106157057 106157455 -17918717 + MTB LTR MaLR 1 400 0 3 1394 250 229 0 0 chr9 106157478 106157548 -17918624 + (CAGAGA)n Simple_repeat Simple_repeat 4 73 0 3 1394 306 148 0 0 chr9 106157827 106157881 -17918291 + (T)n Simple_repeat Simple_repeat 1 54 0 3 1394 721 212 16 5 chr9 106157881 106158033 -17918139 - B1_Mus2 SINE Alu 0 149 1 3 1394 426 121 0 0 chr9 106158033 106158099 -17918073 + (TCC)n Simple_repeat Simple_repeat 1 66 0 3 1394 682 189 33 0 chr9 106158103 106158225 -17917947 - B1_Mur2 SINE Alu -7 142 17 3 1394 419 266 0 72 chr9 106158225 106158237 -17917935 - ID_B1 SINE B4 -3 217 94 3 1394 22 35 0 0 chr9 106158448 106158477 -17917695 + AT_rich Low_complexity Low_complexity 1 29 0 3 1394 534 277 41 28 chr9 106158586 106158731 -17917441 - RSINE1 SINE B4 -18 147 1 3 1394 273 301 121 35 chr9 106158931 106158943 -17917229 + B4 SINE B4 83 147 -145 3 1394 396 207 198 0 chr9 106158943 106159059 -17917113 + B1_Mur4 SINE Alu 7 145 -5 3 1394 273 301 121 35 chr9 106159059 106159072 -17917100 + B4 SINE B4 148 235 -57 3 1394 761 144 35 21 chr9 106160033 106160175 -17915997 - B1_Mus2 SINE Alu -1 148 5 4 1394 699 287 76 31 chr9 106160151 106160400 -17915772 + MLT2C1 LTR ERVL 92 353 -44 4 1394 3698 16 136 0 chr9 106160400 106160834 -17915338 - MT2_Mm LTR ERVL 0 493 1 4 1394 699 287 76 31 chr9 106160834 106160875 -17915297 + MLT2C1 LTR ERVL 354 394 -3 4 1394 874 179 193 11 chr9 106161048 106161229 -17914943 - B3 SINE B2 -1 215 2 4 1394 1703 21 5 0 chr9 106161740 106161932 -17914240 - B2_Mm1t SINE B2 0 193 1 4 1394 207 0 0 0 chr9 106161939 106161962 -17914210 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1394 1197 56 0 0 chr9 106161964 106162107 -17914065 - B1_Mus2 SINE Alu -3 144 2 4 1394 523 192 71 107 chr9 106162246 106162415 -17913757 + RSINE1 SINE B4 3 165 0 4 1394 602 246 202 0 chr9 106162530 106162713 -17913459 - ID_B1 SINE B4 0 224 5 4 1394 865 216 84 15 chr9 106162752 106162954 -17913218 - B3 SINE B2 0 216 1 4 1394 226 309 12 24 chr9 106166176 106166259 -17909913 + ID4 SINE ID 2 83 0 4 1394 1043 0 0 16 chr9 106166364 106166410 -17909762 + (TTC)n Simple_repeat Simple_repeat 1 46 0 4 1394 1410 56 0 0 chr9 106166410 106166590 -17909582 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1394 1043 0 0 16 chr9 106166590 106166667 -17909505 + (TTC)n Simple_repeat Simple_repeat 3 78 0 4 1394 263 259 37 58 chr9 106166667 106166816 -17909356 - B3 SINE B2 0 195 47 4 1394 1127 92 6 0 chr9 106166871 106167034 -17909138 - B2_Mm2 SINE B2 -26 169 6 4 1395 226 0 59 0 chr9 106168525 106168559 -17907613 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1395 736 156 60 26 chr9 106168661 106168856 -17907316 + B3 SINE B2 1 194 -1 4 1395 253 285 189 6 chr9 106168937 106169096 -17907076 + MLT1C LTR MaLR 65 252 -215 4 1395 332 43 22 0 chr9 106169243 106169289 -17906883 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1395 329 206 28 110 chr9 106170053 106170162 -17906010 - URR1A DNA MER1_type -84 142 43 4 1395 513 68 0 0 chr9 106170242 106170316 -17905856 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1395 412 226 177 24 chr9 106172161 106172370 -17903802 - RMER17C LTR ERVK -169 241 1 4 1395 234 287 29 87 chr9 106172734 106172837 -17903335 + MT2B2 LTR ERVL 144 240 -344 4 1395 520 273 31 0 chr9 106172760 106172888 -17903284 + B1F SINE Alu 6 137 -12 4 1395 932 163 0 0 chr9 106172907 106173054 -17903118 + B1_Mus2 SINE Alu 1 147 0 4 1395 428 301 20 68 chr9 106173112 106173258 -17902914 + RSINE1 SINE B4 5 143 -22 4 1395 267 273 15 0 chr9 106173275 106173341 -17902831 + ID4 SINE ID 2 68 -15 4 1395 439 206 0 17 chr9 106173341 106173484 -17902688 + B3 SINE B2 6 210 -6 4 1395 737 207 15 0 chr9 106173508 106173643 -17902529 + B1_Mur4 SINE Alu 1 137 -13 4 1395 1113 68 0 0 chr9 106173643 106173790 -17902382 + (CAAAA)n Simple_repeat Simple_repeat 1 147 0 4 1395 229 149 9 7 chr9 106174037 106174096 -17902076 + MIR SINE MIR 104 168 -100 4 1395 1206 55 7 0 chr9 106174178 106174324 -17901848 - B1_Mm SINE Alu 0 147 1 4 1395 183 42 0 0 chr9 106174334 106174358 -17901814 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 4 1395 748 85 0 0 chr9 106174371 106174477 -17901695 - B1_Mus2 SINE Alu 0 147 42 4 1395 377 58 0 0 chr9 106174530 106174582 -17901590 - PB1D9 SINE Alu -66 54 3 4 1395 616 289 89 0 chr9 106174912 106175102 -17901070 - MER3 DNA MER1_type -2 207 1 4 1395 307 175 18 0 chr9 106175113 106175170 -17901002 - MER5B DNA MER1_type -4 174 117 4 1395 446 260 65 0 chr9 106175175 106175298 -17900874 + B1_Mur1 SINE Alu 3 133 -16 4 1395 325 242 0 0 chr9 106175321 106175387 -17900785 + ID SINE ID 2 67 -157 4 1395 234 297 13 51 chr9 106175326 106175404 -17900768 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 4 1395 443 269 19 0 chr9 106175429 106175472 -17900700 + ID SINE ID 37 81 -143 4 1395 427 225 71 79 chr9 106175472 106175612 -17900560 + B1_Mus2 SINE Alu 1 139 -8 4 1395 578 233 9 0 chr9 106176620 106176736 -17899436 + ID_B1 SINE B4 95 211 -13 4 1395 566 27 27 0 chr9 106176738 106176813 -17899359 + (CAAAA)n Simple_repeat Simple_repeat 2 78 0 4 1395 446 95 0 0 chr9 106176827 106176890 -17899282 + B1F SINE Alu 80 142 -7 4 1395 195 26 49 49 chr9 106177025 106177066 -17899106 + (TGGGGG)n Simple_repeat Simple_repeat 1 41 0 4 1395 210 368 26 11 chr9 106177174 106177332 -17898840 - MIRb SINE MIR -59 203 46 4 1395 231 36 0 0 chr9 106177988 106178016 -17898156 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1395 719 211 15 0 chr9 106178023 106178156 -17898016 - B1_Mur3 SINE Alu -12 137 3 4 1395 2434 200 73 19 chr9 106178426 106178905 -17897267 - RLTR18B LTR ERVK -3 509 5 4 1395 219 246 41 55 chr9 106178911 106178984 -17897188 - B4 SINE B4 -219 73 2 4 1395 183 42 0 0 chr9 106178998 106179022 -17897150 + (TCCA)n Simple_repeat Simple_repeat 3 26 0 4 1395 466 288 0 28 chr9 106179161 106179304 -17896868 - ID_B1 SINE B4 -4 220 82 4 1395 263 28 0 27 chr9 106179410 106179447 -17896725 + (TTA)n Simple_repeat Simple_repeat 2 37 0 4 1395 730 164 0 30 chr9 106179452 106179584 -17896588 - B1_Mur3 SINE Alu -21 128 1 4 1395 349 238 8 103 chr9 106179479 106179596 -17896576 - MT2B LTR ERVL -344 257 152 4 1395 1425 70 21 5 chr9 106180015 106180202 -17895970 + B2_Mm2 SINE B2 1 190 -5 4 1395 549 242 114 0 chr9 106180228 106180360 -17895812 - B1_Mur1 SINE Alu -1 148 2 4 1395 1372 82 39 0 chr9 106180815 106180997 -17895175 + B2_Mm2 SINE B2 1 189 -6 4 1395 475 260 165 17 chr9 106181105 106181281 -17894891 + ID_B1 SINE B4 5 206 -18 4 1395 1911 158 14 29 chr9 106181291 106181477 -17894695 + RLTR14 LTR ERV1 43 233 -149 4 1395 1278 90 10 64 chr9 106181477 106181679 -17894493 - B2_Mm2 SINE B2 -4 191 1 4 1395 1911 158 14 29 chr9 106181679 106181837 -17894335 + RLTR14 LTR ERV1 234 382 0 4 1395 602 243 61 73 chr9 106181916 106182080 -17894092 + B3 SINE B2 55 216 0 4 1395 558 323 30 11 chr9 106182444 106182622 -17893550 - B3A SINE B2 -14 181 1 4 1395 245 171 0 62 chr9 106184692 106184773 -17891399 + T-rich Low_complexity Low_complexity 1 76 0 4 1395 639 186 54 8 chr9 106184789 106184919 -17891253 - B1_Mur2 SINE Alu -12 137 2 4 1395 286 306 47 39 chr9 106184919 106184945 -17891227 - B4A SINE B4 -201 91 65 4 1395 354 198 88 0 chr9 106184978 106185069 -17891103 - L1M4 LINE L1 -1830 4316 4218 4 1395 189 0 0 0 chr9 106185157 106185178 -17890994 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1395 211 238 0 0 chr9 106185456 106185498 -17890674 + B3 SINE B2 89 130 -86 4 1395 550 239 0 17 chr9 106185544 106185663 -17890509 - Lx6 LINE L1 -269 7191 7075 4 1395 737 160 0 8 chr9 106185692 106185812 -17890360 + PB1D9 SINE Alu 2 120 0 4 1395 210 37 0 0 chr9 106185820 106185847 -17890325 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 4 1395 213 189 0 0 chr9 106186211 106186248 -17889924 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 4 1395 823 168 14 0 chr9 106186248 106186391 -17889781 - B1_Mur4 SINE Alu 0 150 6 4 1395 22 0 0 0 chr9 106186403 106186425 -17889747 + AT_rich Low_complexity Low_complexity 1 22 0 4 1395 873 232 115 5 chr9 106186429 106186620 -17889552 - B3 SINE B2 -4 212 1 4 1395 604 236 18 65 chr9 106186640 106186808 -17889364 - B2_Mm2 SINE B2 -1 194 35 4 1395 249 57 0 0 chr9 106188028 106188063 -17888109 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1395 1425 79 21 0 chr9 106188065 106188254 -17887918 - B2_Mm1a SINE B2 0 193 1 4 1395 201 74 0 0 chr9 106188408 106188435 -17887737 + (CAG)n Simple_repeat Simple_repeat 1 27 0 4 1395 214 345 22 11 chr9 106188470 106188561 -17887611 - MIRb SINE MIR -81 187 96 4 1395 26 0 0 0 chr9 106189322 106189348 -17886824 + GC_rich Low_complexity Low_complexity 1 26 0 4 1395 261 0 0 0 chr9 106189932 106189961 -17886211 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1395 306 0 0 0 chr9 106190020 106190054 -17886118 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1395 995 234 14 37 chr9 106193669 106193886 -17882286 - B3 SINE B2 0 216 5 4 1395 741 67 0 0 chr9 106193975 106194079 -17882093 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 4 1395 498 33 0 0 chr9 106194084 106194144 -17882028 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1395 312 236 0 122 chr9 106194197 106194242 -17881930 - B3A SINE B2 -121 77 36 4 1395 1157 55 7 14 chr9 106194242 106194383 -17881789 + B1_Mus1 SINE Alu 2 142 -6 4 1395 237 83 0 0 chr9 106194383 106194419 -17881753 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1395 312 236 0 122 chr9 106194425 106194461 -17881711 - B3A SINE B2 -163 35 6 4 1395 22 56 0 0 chr9 106194521 106194557 -17881615 + AT_rich Low_complexity Low_complexity 1 36 0 4 1395 339 306 89 0 chr9 106194591 106194715 -17881457 - RSINE1 SINE B4 -1 164 30 4 1395 226 327 47 19 chr9 106196960 106197066 -17879106 - MIRm SINE MIR -122 154 46 4 1395 808 197 259 6 chr9 106199679 106200021 -17876151 - RMER10A LTR ERVL -12 430 1 4 1395 404 269 36 27 chr9 106201726 106201837 -17874335 + PB1D10 SINE Alu 3 114 -3 4 1395 724 292 130 51 chr9 106201844 106202197 -17873975 - MLT1A1 LTR MaLR -23 385 5 4 1395 236 154 19 0 chr9 106203816 106203868 -17872304 + CT-rich Low_complexity Low_complexity 2 54 0 4 1395 363 273 215 0 chr9 106203914 106204035 -17872137 + RSINE1 SINE B4 3 149 -16 4 1395 204 40 0 0 chr9 106204311 106204336 -17871836 + (G)n Simple_repeat Simple_repeat 1 25 0 4 1395 630 0 0 0 chr9 106205599 106205669 -17870503 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 4 1395 891 72 0 23 chr9 106206436 106206565 -17869607 - B1_Mus1 SINE Alu -21 127 2 5 1395 393 238 59 0 chr9 106207470 106207571 -17868601 - PB1D10 SINE Alu -10 107 1 5 1395 194 369 87 32 chr9 106207906 106208032 -17868140 - MIRb SINE MIR -6 262 130 5 1395 562 211 72 39 chr9 106209373 106209526 -17866646 - B3 SINE B2 0 216 59 5 1395 261 0 0 0 chr9 106209529 106209558 -17866614 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 5 1395 356 232 241 0 chr9 106209567 106209679 -17866493 - B1_Mur1 SINE Alu -10 139 1 5 1395 212 360 88 0 chr9 106209768 106209893 -17866279 - MIRb SINE MIR -66 202 67 5 1395 274 362 0 0 chr9 106211868 106211984 -17864188 - L1MA4A LINE L1 -373 5930 5815 5 1395 677 261 66 14 chr9 106212000 106212274 -17863898 - L1_Rod LINE L1 -551 5638 5365 5 1395 221 319 31 41 chr9 106212549 106212647 -17863525 + MIR SINE MIR 36 132 -76 5 1395 497 165 10 0 chr9 106212932 106213029 -17863143 + (TA)n Simple_repeat Simple_repeat 1 98 0 5 1395 512 221 93 0 chr9 106213349 106213489 -17862683 - MER20 DNA MER1_type -31 188 36 5 1395 1404 73 17 0 chr9 106214812 106214990 -17861182 - B2_Mm2 SINE B2 -14 181 1 5 1395 337 242 62 10 chr9 106215012 106215108 -17861064 - PB1D9 SINE Alu -1 119 19 5 1395 543 123 42 39 chr9 106215868 106216128 -17860044 + (CA)n Simple_repeat Simple_repeat 1 260 0 5 1395 730 261 150 37 chr9 106216519 106216845 -17859327 - MLT1A0 LTR MaLR -2 363 1 5 1395 460 215 93 9 chr9 106216930 106217038 -17859134 + PB1D10 SINE Alu 1 117 0 5 1395 417 236 77 60 chr9 106218059 106218176 -17857996 - PB1D9 SINE Alu 0 120 2 5 1395 267 302 205 13 chr9 106218230 106218381 -17857791 - MER5A DNA MER1_type -3 186 7 5 1395 819 0 0 0 chr9 106219522 106219613 -17856559 + (TCTCC)n Simple_repeat Simple_repeat 5 95 0 5 1395 240 35 0 0 chr9 106219624 106219653 -17856519 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1395 497 193 76 42 chr9 106219656 106219775 -17856397 - B1_Mm SINE Alu -23 124 2 5 1395 318 242 45 254 chr9 106219676 106219787 -17856385 - B4 SINE B4 -98 194 82 5 1395 585 0 0 0 chr9 106219787 106219852 -17856320 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 5 1395 279 0 0 0 chr9 106219852 106219883 -17856289 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1395 618 213 58 23 chr9 106219883 106220014 -17856158 - RSINE1 SINE B4 -37 128 3 5 1395 748 250 133 0 chr9 106221145 106221325 -17854847 + ID_B1 SINE B4 1 204 -20 5 1395 278 275 186 14 chr9 106222289 106222429 -17853743 + L1MC4a LINE L1 7453 7616 -266 5 1395 817 210 160 0 chr9 106222493 106222693 -17853479 + B4A SINE B4 38 269 -23 5 1395 297 0 0 0 chr9 106222693 106222726 -17853446 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1395 644 226 77 48 chr9 106222731 106222971 -17853201 + L1MC4a LINE L1 7636 7870 -12 5 1395 207 0 0 0 chr9 106223203 106223226 -17852946 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1395 505 245 55 41 chr9 106223335 106223480 -17852692 - B1_Mur1 SINE Alu -1 148 2 5 1395 534 152 0 0 chr9 106223494 106223586 -17852586 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1395 251 226 107 57 chr9 106223591 106223713 -17852459 - RSINE1 SINE B4 -1 164 37 5 1395 272 299 17 70 chr9 106225932 106226062 -17850110 - L1ME1 LINE L1 -41 6138 6012 5 1395 279 0 0 0 chr9 106226103 106226134 -17850038 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1395 658 212 53 0 chr9 106226134 106226266 -17849906 - B1_Mur1 SINE Alu -10 139 1 5 1395 442 284 113 13 chr9 106226559 106226870 -17849302 - L1ME1 LINE L1 -181 5997 5654 5 1395 1526 72 0 5 chr9 106226870 106227065 -17849107 - B2_Mm2 SINE B2 0 195 2 5 1395 294 312 94 0 chr9 106227155 106227251 -17848921 - ID_B1 SINE B4 -117 107 3 5 1395 478 234 77 105 chr9 106227302 106227420 -17848752 - B3 SINE B2 0 216 97 5 1395 1469 78 16 0 chr9 106227420 106227612 -17848560 + B2_Mm2 SINE B2 1 195 0 5 1395 478 234 77 105 chr9 106227612 106227674 -17848498 - B3 SINE B2 -120 96 41 5 1395 895 241 70 4 chr9 106228172 106228401 -17847771 - MTEb LTR MaLR -2 377 134 5 1395 274 288 152 32 chr9 106229155 106229183 -17846989 - B4 SINE B4 -31 261 153 5 1395 495 134 130 26 chr9 106229183 106229298 -17846874 - B1F SINE Alu -1 148 22 5 1395 274 288 152 32 chr9 106229298 106229313 -17846859 - B4 SINE B4 -31 152 85 5 1395 448 166 54 0 chr9 106229384 106229482 -17846690 + B1_Mur4 SINE Alu 26 144 -6 5 1395 528 16 0 0 chr9 106229486 106229547 -17846625 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1395 243 250 93 74 chr9 106229559 106229667 -17846505 - RSINE1 SINE B4 0 165 56 5 1395 262 271 14 0 chr9 106229699 106229769 -17846403 - PB1D10 SINE Alu -20 97 27 5 1395 231 365 39 51 chr9 106230228 106230384 -17845788 - MIR3 SINE MIR -22 186 33 5 1395 283 352 0 45 chr9 106232434 106232544 -17843628 - PB1D10 SINE Alu -11 106 2 5 1395 242 256 36 117 chr9 106232544 106232565 -17843607 - MT2B LTR ERVL -327 251 149 5 1395 443 233 57 158 chr9 106232618 106232629 -17843543 + B1_Mur1 SINE Alu 6 14 -135 5 1395 1959 144 76 102 chr9 106232629 106232777 -17843395 - MTC LTR MaLR 0 421 291 5 1395 1246 55 0 0 chr9 106232777 106232923 -17843249 + B1_Mus2 SINE Alu 1 146 -1 5 1395 243 0 0 0 chr9 106232933 106232960 -17843212 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1395 1959 144 76 102 chr9 106232960 106233232 -17842940 - MTC LTR MaLR -131 290 1 5 1395 443 233 57 158 chr9 106233232 106233378 -17842794 + B1_Mur1 SINE Alu 15 147 -2 5 1395 627 14 0 0 chr9 106233378 106233450 -17842722 + (GGGA)n Simple_repeat Simple_repeat 3 74 0 5 1395 553 179 210 8 chr9 106235563 106235687 -17840485 - B1_Mur4 SINE Alu -1 149 1 5 1395 246 378 11 0 chr9 106235701 106235791 -17840381 + ID_B1 SINE B4 79 169 -55 5 1395 301 247 124 0 chr9 106235714 106235811 -17840361 + PB1D7 SINE Alu 12 120 0 5 1395 874 139 39 0 chr9 106236905 106237034 -17839138 + B1_Mus2 SINE Alu 1 134 -13 5 1395 876 152 0 0 chr9 106237926 106238077 -17838095 + CT-rich Low_complexity Low_complexity 3 153 0 5 1395 766 115 7 0 chr9 106238405 106238534 -17837638 - B1_Mus2 SINE Alu -11 138 5 5 1395 1229 181 24 0 chr9 106238958 106239168 -17837004 - B3 SINE B2 0 216 2 5 1395 1145 80 0 0 chr9 106241971 106242109 -17834063 + B1_Mm SINE Alu 1 138 -9 5 1395 965 113 0 0 chr9 106242722 106242864 -17833308 + B2_Mm2 SINE B2 2 143 -52 5 1395 252 143 0 0 chr9 106245978 106246020 -17830152 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 5 1395 863 104 22 7 chr9 106246030 106246166 -17830006 - B1_Mus1 SINE Alu -1 147 10 5 1395 1155 65 0 0 chr9 106246480 106246618 -17829554 + B1_Mus1 SINE Alu 1 138 -10 5 1395 351 0 0 0 chr9 106246618 106246657 -17829515 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1395 700 11 11 11 chr9 106248264 106248354 -17827818 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 5 1395 555 261 80 0 chr9 106248398 106248536 -17827636 - RSINE1 SINE B4 -14 151 3 5 1395 1145 136 0 5 chr9 106248918 106249103 -17827069 - B2_Mm2 SINE B2 -11 184 1 5 1395 703 250 97 34 chr9 106249645 106249852 -17826320 + ID_B1 SINE B4 5 224 0 5 1395 378 243 47 37 chr9 106250312 106250419 -17825753 + B1F SINE Alu 2 109 -40 5 1395 978 53 53 0 chr9 106252405 106252576 -17823596 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1395 488 165 82 0 chr9 106253888 106253985 -17822187 + PB1D9 SINE Alu 8 112 -8 5 1395 309 231 269 0 chr9 106253985 106253996 -17822176 + B4 SINE B4 93 229 -63 5 1395 3179 42 28 10 chr9 106254660 106255049 -17821123 + MTB LTR MaLR 1 396 -4 5 1395 1452 198 73 41 chr9 106255303 106255671 -17820501 - MTD LTR MaLR -39 380 1 5 1395 234 0 0 0 chr9 106255780 106255806 -17820366 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 1395 444 37 0 0 chr9 106258979 106259033 -17817139 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1395 189 0 0 0 chr9 106259580 106259601 -17816571 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1395 913 168 0 57 chr9 106261156 106261314 -17814858 - B1_Mur2 SINE Alu 0 149 1 5 1395 199 274 55 73 chr9 106263342 106263452 -17812720 + MIR3 SINE MIR 7 114 -94 5 1395 308 284 68 17 chr9 106263732 106263850 -17812322 + MIRc SINE MIR 96 219 -49 5 1395 262 246 29 0 chr9 106264183 106264252 -17811920 + PB1D10 SINE Alu 46 116 -1 5 1395 457 305 19 68 chr9 106264448 106264610 -17811562 - RSINE1 SINE B4 -10 155 2 5 1395 371 264 0 101 chr9 106264614 106264753 -17811419 - PB1 SINE Alu -2 125 1 5 1395 1059 110 7 0 chr9 106264843 106264988 -17811184 + B1_Mus2 SINE Alu 2 147 0 5 1395 240 35 0 0 chr9 106264988 106265017 -17811155 + (TAAAAA)n Simple_repeat Simple_repeat 6 34 0 5 1395 1481 53 21 11 chr9 106265034 106265224 -17810948 + B2_Mm2 SINE B2 4 195 0 5 1395 193 259 74 0 chr9 106265459 106265513 -17810659 + L2c LINE L2 3316 3373 -14 5 1395 347 141 16 0 chr9 106266206 106266270 -17809902 + CT-rich Low_complexity Low_complexity 2 66 0 5 1395 1152 75 0 7 chr9 106266281 106266428 -17809744 + B1_Mm SINE Alu 2 147 0 5 1395 360 131 360 10 chr9 106266445 106266545 -17809627 - B2_Mm2 SINE B2 -14 181 47 5 1395 1207 68 92 0 chr9 106266563 106266726 -17809446 - B2_Mm1t SINE B2 -15 178 1 5 1395 264 268 203 39 chr9 106266998 106267112 -17809060 + B1F1 SINE Alu 1 139 -10 5 1395 279 0 0 0 chr9 106267112 106267143 -17809029 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1395 264 268 203 39 chr9 106267143 106267156 -17809016 + B1F1 SINE Alu 140 149 0 5 1395 3180 126 58 18 chr9 106267789 106268337 -17807835 + RMER15 LTR ERVL 1 570 -5 5 1395 417 256 34 52 chr9 106269200 106269357 -17806815 + B3 SINE B2 48 195 0 5 1395 638 152 136 0 chr9 106269357 106269475 -17806697 + B1_Mus1 SINE Alu 1 134 -14 5 1395 253 293 0 0 chr9 106270512 106270570 -17805602 + L2b LINE L2 3315 3372 -3 6 1395 23 33 0 0 chr9 106270902 106270932 -17805240 + GC_rich Low_complexity Low_complexity 1 30 0 6 1395 42 92 0 0 chr9 106271003 106271122 -17805050 + GC_rich Low_complexity Low_complexity 1 119 0 6 1395 192 40 0 0 chr9 106271177 106271202 -17804970 + (CGG)n Simple_repeat Simple_repeat 1 25 0 6 1395 244 289 0 0 chr9 106271213 106271289 -17804883 + G-rich Low_complexity Low_complexity 4 79 0 6 1395 215 240 0 20 chr9 106272807 106272858 -17803314 + MIRc SINE MIR 102 151 -117 6 1395 189 0 0 0 chr9 106273491 106273512 -17802660 + (TGGG)n Simple_repeat Simple_repeat 3 23 0 6 1395 821 179 7 7 chr9 106275637 106275778 -17800394 + B1_Mur4 SINE Alu 3 143 -7 6 1395 465 90 0 0 chr9 106276688 106276755 -17799417 + (TTTTC)n Simple_repeat Simple_repeat 2 68 0 6 1395 183 184 0 0 chr9 106277805 106277843 -17798329 + CT-rich Low_complexity Low_complexity 4 41 0 6 1395 204 200 0 0 chr9 106277952 106277997 -17798175 + (CATA)n Simple_repeat Simple_repeat 3 47 0 6 1395 687 153 72 7 chr9 106278209 106278347 -17797825 + B1_Mur3 SINE Alu 2 148 -1 6 1395 3221 69 0 0 chr9 106278477 106278902 -17797270 - L1Md_T LINE L1 0 6582 6179 6 1395 1280 90 16 22 chr9 106278950 106279132 -17797040 + B2_Mm2 SINE B2 1 181 -14 6 1395 1160 62 14 0 chr9 106279138 106279282 -17796890 - B1_Mm SINE Alu 0 147 2 6 1395 24 0 0 0 chr9 106279282 106279306 -17796866 + AT_rich Low_complexity Low_complexity 1 24 0 6 1395 186 331 104 8 chr9 106281768 106281893 -17794279 - L2 LINE L2 -597 2822 2686 6 1395 865 217 22 16 chr9 106282092 106282275 -17793897 + B4A SINE B4 46 229 -63 6 1395 1362 85 5 41 chr9 106282275 106282471 -17793701 + B2_Mm1t SINE B2 1 189 -4 6 1395 700 264 104 30 chr9 106282471 106282517 -17793655 + B4 SINE B4 229 291 -1 6 1395 243 0 0 0 chr9 106283374 106283401 -17792771 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1395 1179 44 0 0 chr9 106283401 106283538 -17792634 - B1_Mus2 SINE Alu -10 137 1 6 1395 283 350 42 7 chr9 106284142 106284286 -17791886 - MIR SINE MIR -1 261 113 6 1395 670 201 101 0 chr9 106284380 106284529 -17791643 - RSINE1 SINE B4 0 165 2 6 1395 255 125 0 0 chr9 106284766 106284806 -17791366 + (CGTG)n Simple_repeat Simple_repeat 1 40 0 6 1395 1263 94 0 0 chr9 106284808 106284988 -17791184 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1395 852 173 0 0 chr9 106284988 106285087 -17791085 + (CGTG)n Simple_repeat Simple_repeat 2 100 0 6 1395 1212 106 0 0 chr9 106285087 106285266 -17790906 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1395 852 173 0 0 chr9 106285266 106285328 -17790844 + (CGTG)n Simple_repeat Simple_repeat 4 65 0 6 1395 476 259 121 44 chr9 106287994 106288121 -17788051 + B3A SINE B2 2 149 -49 6 1395 378 0 0 0 chr9 106288121 106288163 -17788009 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1395 476 259 121 44 chr9 106288163 106288185 -17787987 + B3A SINE B2 150 168 -30 6 1395 895 181 7 26 chr9 106288185 106288338 -17787834 - B1_Mur4 SINE Alu 0 150 1 6 1395 476 259 121 44 chr9 106288338 106288369 -17787803 + B3A SINE B2 169 196 -2 6 1395 182 291 124 34 chr9 106288932 106289021 -17787151 - MIRm SINE MIR -140 136 40 6 1395 231 278 139 36 chr9 106289940 106290069 -17786103 + MIRb SINE MIR 25 160 -102 6 1395 2373 121 142 67 chr9 106290728 106290807 -17785365 + RMER4B LTR ERVK 3 52 -533 6 1395 2439 52 3 19 chr9 106290807 106291122 -17785050 + L1Md_F2 LINE L1 6273 6582 0 6 1395 2373 121 142 67 chr9 106291122 106291583 -17784589 + RMER4B LTR ERVK 53 584 -1 6 1395 906 196 57 33 chr9 106291587 106291798 -17784374 + MurERV4-int LTR ERVK 1 216 -5044 6 1395 5442 144 51 13 chr9 106291880 106292821 -17783351 + MurERV4-int LTR ERVK 408 1384 -3876 6 1395 206 336 149 14 chr9 106293599 106293747 -17782425 - MIRb SINE MIR -20 248 81 6 1395 306 302 86 0 chr9 106294316 106294432 -17781740 + MIRc SINE MIR 25 150 -118 6 1395 1135 44 15 0 chr9 106294434 106294569 -17781603 + B1_Mm SINE Alu 1 137 -10 6 1395 531 0 0 0 chr9 106294569 106294628 -17781544 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 6 1395 188 34 0 33 chr9 106294960 106294990 -17781182 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 6 1395 216 0 0 0 chr9 106296229 106296253 -17779919 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 6 1395 659 229 8 22 chr9 106296259 106296393 -17779779 - B1_Mur2 SINE Alu -16 133 2 6 1395 213 293 60 75 chr9 106296449 106296582 -17779590 - MIR3 SINE MIR -54 154 24 6 1395 338 308 31 31 chr9 106297607 106297768 -17778404 + MIR SINE MIR 80 240 -22 6 1395 261 0 0 0 chr9 106297846 106297875 -17778297 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 6 1395 1244 48 0 0 chr9 106298715 106298862 -17777310 + B1_Mus1 SINE Alu 2 148 0 6 1395 225 0 0 0 chr9 106298883 106298908 -17777264 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 1395 552 338 0 0 chr9 106298949 106299103 -17777069 + RSINE1 SINE B4 5 158 -7 6 1395 479 232 35 9 chr9 106299217 106299330 -17776842 - PB1D10 SINE Alu -1 116 1 6 1396 396 0 0 0 chr9 106299676 106299720 -17776452 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1396 1456 53 37 0 chr9 106299879 106300067 -17776105 + B2_Mm2 SINE B2 1 195 0 6 1396 202 211 19 0 chr9 106300835 106300850 -17775322 + polypurine Low_complexity Low_complexity 4 19 0 6 1396 1233 101 0 0 chr9 106300850 106301029 -17775143 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1396 202 211 19 0 chr9 106301029 106301065 -17775107 + polypurine Low_complexity Low_complexity 20 55 0 6 1396 613 213 0 96 chr9 106301793 106301949 -17774223 + B1_Mur2 SINE Alu 9 149 0 6 1396 1958 115 140 3 chr9 106302119 106302468 -17773704 - MTB_Mm LTR MaLR -8 399 3 6 1396 194 128 26 0 chr9 106302678 106302717 -17773455 + CT-rich Low_complexity Low_complexity 1 40 0 6 1396 617 239 29 14 chr9 106302719 106302859 -17773313 - B1F SINE Alu -7 142 1 6 1396 306 309 126 23 chr9 106303683 106303898 -17772274 + L2b LINE L2 3019 3255 -120 6 1396 347 155 0 0 chr9 106304293 106304351 -17771821 + RLTR14 LTR ERV1 325 382 0 6 1396 239 253 119 12 chr9 106304351 106304434 -17771738 - PB1D10 SINE Alu -14 103 12 6 1396 249 200 30 15 chr9 106304652 106304718 -17771454 + MIR SINE MIR 71 137 -71 6 1396 248 125 0 0 chr9 106306331 106306371 -17769801 + PB1D10 SINE Alu 56 95 -22 6 1396 381 236 0 0 chr9 106306337 106306409 -17769763 + B1F SINE Alu 65 136 -13 6 1396 27 0 0 0 chr9 106306409 106306436 -17769736 + AT_rich Low_complexity Low_complexity 1 27 0 6 1396 1147 42 27 14 chr9 106306436 106306582 -17769590 + B1_Mus1 SINE Alu 1 148 0 6 1396 859 244 61 0 chr9 106306592 106306789 -17769383 - B3 SINE B2 -6 210 2 6 1396 2206 104 3 0 chr9 106306852 106307170 -17769002 + ORR1A2 LTR MaLR 1 319 -8 6 1396 429 300 0 32 chr9 106307174 106307298 -17768874 + B1F2 SINE Alu 30 149 0 6 1396 24 0 0 0 chr9 106307341 106307365 -17768807 + AT_rich Low_complexity Low_complexity 1 24 0 6 1396 228 227 0 0 chr9 106307624 106307668 -17768504 + C-rich Low_complexity Low_complexity 1 44 0 6 1396 464 175 0 10 chr9 106308308 106308406 -17767766 + CT-rich Low_complexity Low_complexity 2 98 0 6 1396 680 193 28 21 chr9 106308412 106308555 -17767617 - B1_Mur4 SINE Alu -1 149 6 6 1396 247 274 29 95 chr9 106310655 106310792 -17765380 + MIRb SINE MIR 24 151 -117 6 1396 396 305 61 47 chr9 106310888 106311036 -17765136 + B1_Mur4 SINE Alu 1 150 0 6 1396 594 266 32 13 chr9 106310896 106311053 -17765119 + ID_B1 SINE B4 87 246 -46 6 1396 486 217 12 239 chr9 106311512 106311679 -17764493 - B3A SINE B2 0 198 68 6 1396 968 106 7 0 chr9 106311668 106311809 -17764363 + B1_Mus1 SINE Alu 6 147 -1 6 1396 1491 64 27 0 chr9 106311815 106312002 -17764170 + B2_Mm2 SINE B2 2 193 -2 6 1396 501 229 0 0 chr9 106312043 106312139 -17764033 - B3A SINE B2 -101 97 2 6 1396 805 249 94 5 chr9 106313882 106314084 -17762088 + ID_B1 SINE B4 5 224 0 6 1396 384 125 0 0 chr9 106314641 106314705 -17761467 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1396 192 77 0 0 chr9 106315166 106315192 -17760980 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1396 216 352 56 0 chr9 106315431 106315539 -17760633 + MIRb SINE MIR 47 160 -108 6 1396 192 318 33 76 chr9 106316491 106316583 -17759589 - MIRb SINE MIR -92 176 89 6 1396 1184 72 0 18 chr9 106316891 106317060 -17759112 + B2_Mm2 SINE B2 3 168 -27 6 1396 673 284 176 49 chr9 106317241 106317689 -17758483 - MLT1D LTR MaLR 0 505 1 6 1396 836 205 11 56 chr9 106318046 106318314 -17757858 + ORR1D2 LTR MaLR 32 364 -6 6 1396 747 134 61 30 chr9 106318315 106318446 -17757726 + B1_Mus2 SINE Alu 1 135 -12 6 1396 905 132 7 0 chr9 106319044 106319180 -17756992 + B1_Mur4 SINE Alu 1 137 -13 6 1396 405 0 0 0 chr9 106319182 106319227 -17756945 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 6 1396 288 111 0 0 chr9 106321127 106321172 -17755000 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 6 1396 205 200 0 44 chr9 106321179 106321247 -17754925 + CT-rich Low_complexity Low_complexity 2 66 0 6 1396 414 0 0 0 chr9 106321963 106322009 -17754163 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1396 312 222 0 0 chr9 106322585 106322657 -17753515 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1396 1004 169 0 43 chr9 106322657 106322842 -17753330 - B2_Mm2 SINE B2 -18 177 1 6 1396 246 318 0 0 chr9 106324692 106324758 -17751414 - ID_B1 SINE B4 -16 208 143 6 1396 1607 81 40 5 chr9 106324764 106324987 -17751185 - L1_Mus1 LINE L1 0 6567 6337 6 1396 3167 78 0 2 chr9 106324987 106325447 -17750725 + L1_Mm LINE L1 3030 3488 -2395 6 1396 702 180 57 14 chr9 106325847 106325988 -17750184 + B1_Mur1 SINE Alu 2 148 -1 6 1396 1338 72 55 0 chr9 106325993 106326174 -17749998 + B2_Mm1t SINE B2 2 192 -1 6 1396 244 217 0 32 chr9 106326314 106326376 -17749796 - tRNA-Ala-GCY_ tRNA tRNA -12 63 4 7 1396 631 215 92 20 chr9 106326392 106326544 -17749628 - B3 SINE B2 -52 164 2 7 1396 1167 44 0 0 chr9 106326710 106326845 -17749327 + B1_Mus1 SINE Alu 1 135 -13 7 1396 717 12 0 0 chr9 106326846 106326928 -17749244 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 7 1396 323 264 74 19 chr9 106326929 106327037 -17749135 - RSINE1 SINE B4 -48 117 4 7 1396 1167 78 168 0 chr9 106327269 106327436 -17748736 - B2_Mm2 SINE B2 0 195 1 7 1396 207 120 0 123 chr9 106327472 106327482 -17748690 + (CAAA)n Simple_repeat Simple_repeat 3 11 0 7 1396 1245 48 0 0 chr9 106327482 106327628 -17748544 + B1_Mm SINE Alu 2 147 0 7 1396 207 120 0 123 chr9 106327628 106327652 -17748520 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 7 1396 980 146 7 0 chr9 106327652 106327796 -17748376 + B1_Mus2 SINE Alu 2 146 -1 7 1396 207 120 0 123 chr9 106327796 106327817 -17748355 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1396 557 261 22 7 chr9 106327834 106327973 -17748199 + B1_Mur4 SINE Alu 10 150 0 7 1396 870 265 61 5 chr9 106328026 106328238 -17747934 + ID_B1 SINE B4 1 224 0 7 1396 361 228 21 32 chr9 106328274 106328369 -17747803 + RSINE1 SINE B4 38 131 -34 7 1396 180 0 0 0 chr9 106328374 106328394 -17747778 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1396 1068 219 9 24 chr9 106328409 106328620 -17747552 + B3 SINE B2 3 210 -6 7 1396 360 0 0 0 chr9 106328868 106328908 -17747264 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 7 1396 1166 77 0 0 chr9 106328908 106329051 -17747121 - B1_Mus2 SINE Alu -3 144 2 7 1396 32 48 0 16 chr9 106329056 106329096 -17747076 + AT_rich Low_complexity Low_complexity 1 40 0 7 1396 753 111 101 29 chr9 106329096 106329235 -17746937 - B1_Mur3 SINE Alu 0 149 1 7 1396 32 48 0 16 chr9 106329235 106329258 -17746914 + AT_rich Low_complexity Low_complexity 1 23 0 7 1396 1177 71 141 0 chr9 106329305 106329475 -17746697 + B2_Mm2 SINE B2 1 194 -1 7 1396 1132 74 0 20 chr9 106329484 106329635 -17746537 + B1_Mus1 SINE Alu 1 148 0 7 1396 1048 69 0 0 chr9 106329871 106330001 -17746171 - B1_Mus1 SINE Alu -17 131 2 7 1396 388 265 77 0 chr9 106330048 106330165 -17746007 - RSINE1 SINE B4 -35 130 5 7 1396 333 242 55 0 chr9 106330171 106330262 -17745910 - ID_B1 SINE B4 0 224 129 7 1396 535 200 105 0 chr9 106330314 106330419 -17745753 - B1_Mur2 SINE Alu -6 143 28 7 1396 1133 82 0 14 chr9 106330445 106330593 -17745579 + B1_Mus1 SINE Alu 1 146 -2 7 1396 228 265 155 12 chr9 106330601 106330685 -17745487 - PB1D10 SINE Alu -4 113 18 7 1396 286 75 0 0 chr9 106330739 106330778 -17745394 + B2_Mm1t SINE B2 2 40 -153 7 1396 1276 58 0 6 chr9 106330778 106330938 -17745234 + B2_Mm1a SINE B2 1 160 -33 7 1396 474 18 0 0 chr9 106330938 106330993 -17745179 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 7 1396 1276 58 0 6 chr9 106330993 106331006 -17745166 + B2_Mm1a SINE B2 161 173 -20 7 1396 1190 60 0 0 chr9 106331004 106331171 -17745001 + B2_Mm1a SINE B2 27 193 0 7 1396 184 255 162 10 chr9 106331341 106331440 -17744732 + L2 LINE L2 2720 2833 -586 7 1396 237 294 21 32 chr9 106331572 106331667 -17744505 + PB1D10 SINE Alu 18 111 -6 7 1396 512 165 2 13 chr9 106332800 106332907 -17743265 - B1_Mus2 SINE Alu -8 141 40 7 1396 187 206 0 0 chr9 106335240 106335274 -17740898 + MIRc SINE MIR 120 153 -115 7 1396 420 20 0 0 chr9 106335628 106335677 -17740495 + (CCCTG)n Simple_repeat Simple_repeat 5 53 0 7 1396 716 169 36 7 chr9 106336294 106336431 -17739741 - B1_Mur4 SINE Alu 0 150 10 7 1396 478 325 6 13 chr9 106336431 106336450 -17739722 - ID_B1 SINE B4 0 224 70 7 1396 264 252 215 0 chr9 106336445 106336614 -17739558 - ID_B1 SINE B4 -3 221 8 7 1396 749 220 57 0 chr9 106338761 106338902 -17737270 + B1_Mur1 SINE Alu 1 149 0 7 1396 237 297 181 0 chr9 106339439 106339565 -17736607 - MIRc SINE MIR -86 182 31 7 1396 372 285 7 58 chr9 106340195 106340333 -17735839 - MIRb SINE MIR -30 238 108 7 1396 286 80 319 51 chr9 106341649 106341765 -17734407 - B2_Mm2 SINE B2 -2 193 47 7 1396 351 0 0 0 chr9 106341816 106341855 -17734317 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 1396 910 137 80 6 chr9 106341856 106342018 -17734154 - B2_Mm2 SINE B2 -20 175 2 7 1396 314 272 25 0 chr9 106342169 106342250 -17733922 - MIR SINE MIR -72 190 108 7 1396 509 0 0 16 chr9 106342849 106342911 -17733261 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1396 217 39 77 19 chr9 106343336 106343388 -17732784 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 7 1396 337 298 9 28 chr9 106343401 106343508 -17732664 + RSINE1 SINE B4 8 112 -53 7 1396 2380 125 65 37 chr9 106343633 106344065 -17732107 + RMER4A LTR ERVK 1 444 -22 7 1396 1051 59 59 0 chr9 106344065 106344200 -17731972 + B1_Mus1 SINE Alu 1 143 -5 7 1396 189 0 0 0 chr9 106344286 106344307 -17731865 + (TTG)n Simple_repeat Simple_repeat 1 21 0 7 1396 676 203 65 0 chr9 106344334 106344457 -17731715 - B1_Mus2 SINE Alu -16 131 1 7 1396 334 231 63 32 chr9 106344718 106344845 -17731327 - PB1D10 SINE Alu -20 127 1 7 1396 661 274 0 43 chr9 106344966 106345130 -17731042 - B3A SINE B2 0 198 42 7 1396 741 117 247 25 chr9 106345130 106345288 -17730884 + B2_Mm2 SINE B2 2 194 -1 7 1396 21 0 0 0 chr9 106345288 106345309 -17730863 + AT_rich Low_complexity Low_complexity 1 21 0 7 1396 950 66 36 0 chr9 106345311 106345448 -17730724 + B2_Mm2 SINE B2 1 142 -53 7 1396 443 219 0 0 chr9 106345533 106345615 -17730557 + ID4_ SINE ID 1 82 -1 7 1396 240 35 0 0 chr9 106345870 106345899 -17730273 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 7 1396 1206 48 0 7 chr9 106346772 106346920 -17729252 + B1_Mm SINE Alu 1 147 0 7 1396 3046 163 26 21 chr9 106348392 106348957 -17727215 + RMER15 LTR ERVL 8 575 0 7 1396 675 185 31 8 chr9 106349025 106349178 -17726994 + B1F2 SINE Alu 1 150 0 7 1396 368 231 27 55 chr9 106349333 106349443 -17726729 + RSINE1 SINE B4 28 134 -31 7 1396 226 290 26 53 chr9 106351460 106351548 -17724624 - MIRb SINE MIR -11 257 172 7 1396 1114 88 0 7 chr9 106351548 106351697 -17724475 - B1_Mus1 SINE Alu 0 148 1 7 1396 226 290 26 53 chr9 106351697 106351721 -17724451 - MIRb SINE MIR -97 171 148 7 1396 937 147 7 27 chr9 106351799 106351946 -17724226 - B1_Mus1 SINE Alu -3 145 2 7 1396 1176 69 0 0 chr9 106351966 106352110 -17724062 - B1_Mus2 SINE Alu -2 145 2 7 1396 285 359 51 40 chr9 106353363 106353540 -17722632 - MIRb SINE MIR -74 194 16 7 1396 297 0 0 0 chr9 106353970 106354003 -17722169 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1396 234 105 0 0 chr9 106355547 106355585 -17720587 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1396 270 0 0 0 chr9 106356040 106356070 -17720102 + (CGGGG)n Simple_repeat Simple_repeat 2 31 0 7 1396 193 159 32 0 chr9 106356129 106356192 -17719980 + (CGGGG)n Simple_repeat Simple_repeat 5 69 0 7 1396 22 35 0 0 chr9 106356342 106356371 -17719801 + GC_rich Low_complexity Low_complexity 1 29 0 7 1396 340 314 46 55 chr9 106360287 106360518 -17715654 - L2b LINE L2 0 3375 3164 7 1396 351 268 20 10 chr9 106361562 106361660 -17714512 - PB1D10 SINE Alu -5 112 14 7 1396 367 262 0 0 chr9 106361782 106361862 -17714310 - ID4 SINE ID -1 82 3 7 1396 250 331 53 30 chr9 106361910 106362041 -17714131 - MIRc SINE MIR -63 205 72 7 1396 1010 93 40 7 chr9 106362083 106362235 -17713937 + B2_Mm2 SINE B2 1 157 -38 7 1396 549 0 0 0 chr9 106365255 106365316 -17710856 + (TCCC)n Simple_repeat Simple_repeat 3 63 0 7 1396 22 35 0 0 chr9 106367256 106367285 -17708887 + GC_rich Low_complexity Low_complexity 1 29 0 7 1396 25 65 0 0 chr9 106367422 106367468 -17708704 + GC_rich Low_complexity Low_complexity 1 46 0 7 1396 22 0 0 0 chr9 106367670 106367692 -17708480 + GC_rich Low_complexity Low_complexity 1 22 0 7 1396 198 194 0 0 chr9 106368629 106368665 -17707507 + L2b LINE L2 3324 3359 -16 7 1396 1632 32 5 0 chr9 106368870 106369058 -17707114 + B2_Mm1a SINE B2 2 190 -3 7 1396 362 285 48 16 chr9 106369693 106369818 -17706354 + LTR33A_ LTR ERVL 332 460 -71 7 1396 1342 60 50 0 chr9 106369829 106370011 -17706161 - B2_Mm1a SINE B2 0 193 3 7 1396 674 109 73 0 chr9 106370040 106370150 -17706022 - RLTR45-int LTR ERVK -7126 118 1 7 1396 647 110 0 126 chr9 106370150 106370285 -17705887 - RLTR45 LTR ERVK 0 482 365 7 1396 662 172 70 0 chr9 106370891 106371019 -17705153 + B1_Mur2 SINE Alu 12 148 -1 7 1396 1409 79 21 5 chr9 106371036 106371227 -17704945 + B2_Mm2 SINE B2 2 195 0 7 1396 225 0 0 0 chr9 106371227 106371252 -17704920 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 7 1396 950 121 28 0 chr9 106371281 106371422 -17704750 + B1_Mus1 SINE Alu 3 147 -1 7 1396 742 176 14 8 chr9 106371680 106371835 -17704337 + B3 SINE B2 63 216 0 7 1396 586 266 199 12 chr9 106372603 106373012 -17703160 + L1MA6 LINE L1 5620 6104 -187 7 1396 589 239 54 0 chr9 106373166 106373296 -17702876 - B1F SINE Alu 0 149 13 7 1396 258 274 57 74 chr9 106373209 106373331 -17702841 - MT2B2 LTR ERVL -328 256 137 7 1396 406 298 25 0 chr9 106373340 106373461 -17702711 - PB1 SINE Alu -2 125 2 7 1396 216 158 0 0 chr9 106374859 106374897 -17701275 + GA-rich Low_complexity Low_complexity 4 41 0 7 1396 261 0 0 0 chr9 106376660 106376689 -17699483 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 7 1396 1086 76 0 58 chr9 106377907 106378061 -17698111 + B1_Mus1 SINE Alu 2 146 -2 7 1396 185 35 69 0 chr9 106378068 106378097 -17698075 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1396 305 237 13 13 chr9 106380419 106380496 -17695676 - PB1 SINE Alu -7 120 44 8 1396 309 325 68 1 chr9 106380754 106380773 -17695399 - B4 SINE B4 -94 198 143 8 1396 400 212 25 0 chr9 106380773 106380853 -17695319 - B1_Mur4 SINE Alu -58 92 11 8 1396 309 325 68 1 chr9 106380853 106380874 -17695298 - B4 SINE B4 -94 142 73 8 1396 500 213 9 0 chr9 106380901 106381009 -17695163 - B1_Mur4 SINE Alu 0 150 42 8 1396 279 0 0 0 chr9 106381033 106381064 -17695108 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 8 1396 588 252 41 41 chr9 106381064 106381234 -17694938 - B3A SINE B2 -27 171 2 8 1396 346 239 21 93 chr9 106381411 106381423 -17694749 + MT2B LTR ERVL 152 156 -445 8 1396 557 222 17 17 chr9 106381423 106381533 -17694639 + PB1D9 SINE Alu 2 111 -9 8 1396 207 0 0 0 chr9 106381533 106381556 -17694616 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1396 693 122 52 0 chr9 106381753 106381868 -17694304 - B1_Mur2 SINE Alu 0 149 29 8 1396 387 290 35 14 chr9 106382388 106382520 -17693652 - PB1D7 SINE Alu -22 127 1 8 1396 357 269 15 112 chr9 106382520 106382567 -17693605 - ID SINE ID -144 80 47 8 1396 211 213 21 21 chr9 106382624 106382672 -17693500 + C-rich Low_complexity Low_complexity 5 52 0 8 1396 256 312 56 19 chr9 106382740 106382900 -17693272 - HAL1 LINE L1 -1009 1498 1333 8 1396 1124 83 0 0 chr9 106383841 106383985 -17692187 + B1_Mus1 SINE Alu 5 148 0 8 1396 234 91 0 0 chr9 106384499 106384532 -17691640 + (TTG)n Simple_repeat Simple_repeat 1 33 0 8 1396 578 135 10 0 chr9 106384532 106384636 -17691536 + (TCC)n Simple_repeat Simple_repeat 2 106 0 8 1396 1393 90 26 5 chr9 106384638 106384827 -17691345 - B2_Mm2 SINE B2 0 195 3 8 1396 351 0 0 0 chr9 106384827 106384866 -17691306 + (TTA)n Simple_repeat Simple_repeat 3 41 0 8 1396 213 318 83 9 chr9 106388369 106388477 -17687695 - L2 LINE L2 -505 2914 2799 8 1396 653 227 7 34 chr9 106388483 106388629 -17687543 + RSINE1 SINE B4 3 144 -21 8 1396 24 0 0 0 chr9 106388888 106388912 -17687260 + AT_rich Low_complexity Low_complexity 1 24 0 8 1396 366 161 22 120 chr9 106388927 106389019 -17687153 + B2_Mm2 SINE B2 1 83 -112 8 1396 1325 77 55 0 chr9 106389066 106389249 -17686923 + B2_Mm1a SINE B2 1 193 0 8 1396 1208 34 7 13 chr9 106389559 106389708 -17686464 - B1_Mus1 SINE Alu 0 148 1 8 1396 2115 155 105 14 chr9 106389897 106390315 -17685857 - Lx LINE L1 -2 6652 6197 8 1396 2462 93 53 0 chr9 106390318 106390693 -17685479 + MT-int LTR MaLR 4 398 -700 8 1396 23 0 0 0 chr9 106390736 106390759 -17685413 + AT_rich Low_complexity Low_complexity 1 23 0 8 1396 1143 62 0 20 chr9 106390865 106391014 -17685158 - B1_Mus2 SINE Alu -1 146 1 8 1396 508 51 0 25 chr9 106391047 106391128 -17685044 - L1Md_F2 LINE L1 -3 6579 6501 8 1396 182 0 0 97 chr9 106391130 106391148 -17685024 + (T)n Simple_repeat Simple_repeat 1 18 0 8 1396 1159 61 0 20 chr9 106391148 106391298 -17684874 - B1_Mm SINE Alu 0 147 1 8 1396 182 0 0 97 chr9 106391298 106391310 -17684862 + (T)n Simple_repeat Simple_repeat 1 10 0 8 1396 503 40 0 50 chr9 106391331 106391411 -17684761 - L1Md_F2 LINE L1 -6 6576 6501 8 1396 1191 74 0 0 chr9 106391428 106391576 -17684596 - B1_Mus1 SINE Alu 0 148 1 8 1396 1114 68 47 0 chr9 106391639 106391787 -17684385 + B2_Mm2 SINE B2 27 181 -14 8 1396 1078 68 0 64 chr9 106392995 106393152 -17683020 + B1_Mus1 SINE Alu 2 148 0 8 1396 221 118 0 150 chr9 106393152 106393194 -17682978 + A-rich Low_complexity Low_complexity 1 34 0 8 1396 1212 41 14 0 chr9 106393194 106393339 -17682833 + B1_Mm SINE Alu 1 147 0 8 1396 221 118 0 150 chr9 106393339 106393356 -17682816 + A-rich Low_complexity Low_complexity 35 51 0 8 1396 435 276 74 29 chr9 106393428 106393603 -17682569 - B3A SINE B2 -15 183 1 8 1396 1219 48 0 0 chr9 106393623 106393770 -17682402 - B1_Mus2 SINE Alu 0 147 1 8 1396 1300 85 15 50 chr9 106394190 106394389 -17681783 - B2_Mm2 SINE B2 -1 194 3 8 1396 1024 45 106 0 chr9 106394428 106394560 -17681612 + B1_Mus1 SINE Alu 2 147 -1 8 1396 241 24 48 24 chr9 106394560 106394602 -17681570 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 8 1396 341 228 25 0 chr9 106394604 106394683 -17681489 + PB1D9 SINE Alu 40 120 0 8 1396 558 0 0 0 chr9 106394693 106394755 -17681417 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1396 4425 20 2 0 chr9 106395297 106395789 -17680383 + MT2_Mm LTR ERVL 1 493 0 8 1396 48708 18 0 0 chr9 106395789 106401145 -17675027 + MERVL-int LTR ERVL 1 5355 -130 8 1396 403 167 46 35 chr9 106401149 106401236 -17674936 + ORR1A3-int LTR MaLR 553 640 -1323 8 1396 319 0 0 0 chr9 106401236 106401274 -17674898 + MERVL-int LTR ERVL 5448 5485 0 8 1396 3803 14 121 0 chr9 106401274 106401714 -17674458 + MT2_Mm LTR ERVL 1 493 0 8 1396 461 177 25 0 chr9 106401863 106401942 -17674230 - B1F SINE Alu -68 81 1 8 1396 785 153 0 0 chr9 106402472 106402596 -17673576 + B1_Mus1 SINE Alu 1 124 -24 8 1396 229 315 52 73 chr9 106403261 106403357 -17672815 + PB1D10 SINE Alu 4 97 -20 8 1396 695 192 0 6 chr9 106403359 106403537 -17672635 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 1396 309 259 67 11 chr9 106403565 106403655 -17672517 + L1M4b LINE L1 1832 1926 -5408 8 1396 812 114 0 26 chr9 106404761 106404914 -17671258 + (TCC)n Simple_repeat Simple_repeat 3 151 0 8 1396 677 206 29 0 chr9 106404922 106405058 -17671114 - B1_Mus2 SINE Alu -6 141 2 8 1396 413 104 188 13 chr9 106405422 106405533 -17670639 - B2_Mm2 SINE B2 -1 194 47 8 1396 359 58 19 0 chr9 106405561 106405613 -17670559 - B2_Mm1a SINE B2 -14 179 127 8 1396 191 155 172 0 chr9 106405613 106405671 -17670501 + MIRc SINE MIR 66 133 -135 8 1396 227 175 140 0 chr9 106405738 106405795 -17670377 + L1MA9 LINE L1 6238 6302 -10 8 1396 607 289 7 21 chr9 106405912 106406057 -17670115 + B1F1 SINE Alu 7 149 0 8 1396 700 204 83 0 chr9 106406133 106406265 -17669907 - B1_Mus2 SINE Alu 0 147 5 8 1396 635 283 25 45 chr9 106406387 106406587 -17669585 - B3A SINE B2 -2 196 1 8 1396 303 300 100 0 chr9 106407983 106408073 -17668099 + B3A SINE B2 2 100 -98 8 1396 452 18 18 0 chr9 106408216 106408273 -17667899 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 8 1396 631 183 17 0 chr9 106408274 106408389 -17667783 - B1_Mur2 SINE Alu -3 146 30 8 1396 456 92 39 26 chr9 106408391 106408469 -17667703 + B2_Mm2 SINE B2 108 186 -9 8 1396 246 32 0 0 chr9 106408526 106408557 -17667615 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1396 446 91 13 0 chr9 106408557 106408634 -17667538 + (GA)n Simple_repeat Simple_repeat 1 78 0 8 1396 750 229 92 27 chr9 106408640 106408664 -17667508 - B3A SINE B2 -1 197 178 8 1396 206 0 69 0 chr9 106408664 106408693 -17667479 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 8 1396 962 152 13 6 chr9 106408693 106408852 -17667320 - B2_Mm2 SINE B2 -34 161 2 8 1396 432 156 38 25 chr9 106409494 106409573 -17666599 + MTC LTR MaLR 1 80 -327 8 1396 288 0 0 0 chr9 106409610 106409642 -17666530 + (TA)n Simple_repeat Simple_repeat 2 33 0 8 1396 1138 48 0 0 chr9 106409643 106409788 -17666384 - B2_Mm2 SINE B2 -49 146 2 8 1396 2189 112 44 9 chr9 106409790 106410131 -17666041 + MTC LTR MaLR 69 421 0 8 1396 395 231 43 21 chr9 106410175 106410268 -17665904 - B4 SINE B4 -195 97 3 8 1396 718 60 80 0 chr9 106410505 106410605 -17665567 - B1_Mus1 SINE Alu -15 133 26 8 1396 301 244 127 22 chr9 106410605 106410639 -17665533 - B4A SINE B4 -80 212 65 8 1396 533 229 170 0 chr9 106410653 106410806 -17665366 - B3A SINE B2 -18 180 2 8 1396 241 269 40 136 chr9 106410871 106411099 -17665073 + L1MC LINE L1 3651 3856 -2290 8 1396 502 245 76 35 chr9 106411179 106411323 -17664849 + ID_B1 SINE B4 73 222 -2 8 1396 624 200 76 8 chr9 106411375 106411506 -17664666 + B1_Mus1 SINE Alu 2 141 -7 8 1396 198 0 0 0 chr9 106411512 106411534 -17664638 + (CAAAC)n Simple_repeat Simple_repeat 3 24 0 8 1396 1438 263 49 70 chr9 106411547 106412074 -17664098 - Cheshire DNA MER1_type -304 2116 1601 8 1396 715 226 53 0 chr9 106412067 106412236 -17663936 - B3 SINE B2 -2 193 1 8 1396 2317 176 72 31 chr9 106412240 106412364 -17663808 + RLTR12B LTR ERVK 1 145 -383 8 1396 1840 72 256 10 chr9 106412364 106412657 -17663515 - RLTR8 LTR ERVK 0 365 1 8 1396 2317 176 72 31 chr9 106412657 106413018 -17663154 + RLTR12B LTR ERVK 146 506 -22 8 1396 306 0 0 0 chr9 106413026 106413060 -17663112 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 1396 615 154 209 26 chr9 106413081 106413234 -17662938 - B2_Mm2 SINE B2 -3 192 12 8 1396 961 169 130 10 chr9 106413340 106413532 -17662640 - B3 SINE B2 -1 215 1 8 1396 632 279 17 16 chr9 106413661 106413815 -17662357 + ID_B1 SINE B4 70 223 -69 8 1396 372 299 88 39 chr9 106413867 106414048 -17662124 + B4 SINE B4 16 205 -87 8 1396 626 239 119 71 chr9 106414053 106414305 -17661867 + B4A SINE B4 1 264 -28 8 1396 300 309 159 6 chr9 106414395 106414569 -17661603 - Cheshire DNA MER1_type -834 1586 1386 8 1396 1930 125 50 62 chr9 106414569 106414909 -17661263 + ORR1A1 LTR MaLR 1 336 -10 8 1396 1486 333 36 10 chr9 106415245 106415827 -17660345 - Cheshire DNA MER1_type -1271 1149 553 8 1396 481 292 95 0 chr9 106415819 106415966 -17660206 - B3 SINE B2 0 216 56 8 1396 2015 126 174 42 chr9 106415969 106416349 -17659823 + RMER2 LTR ERV1 36 465 -102 8 1396 418 321 97 22 chr9 106416358 106416492 -17659680 - B4 SINE B4 -147 145 2 8 1396 886 214 124 10 chr9 106416513 106416707 -17659465 - B3 SINE B2 0 216 1 8 1396 484 274 4 143 chr9 106417082 106417312 -17658860 - RMER30 DNA MER1_type 0 202 5 8 1396 705 154 113 8 chr9 106417377 106417501 -17658671 + B1_Mur2 SINE Alu 1 137 -12 8 1396 309 51 0 0 chr9 106417506 106417545 -17658627 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1396 369 199 35 17 chr9 106418506 106418680 -17657492 + (TG)n Simple_repeat Simple_repeat 2 178 0 9 1396 198 205 39 0 chr9 106418692 106418770 -17657402 + (TG)n Simple_repeat Simple_repeat 2 82 0 9 1396 504 168 40 11 chr9 106418788 106418963 -17657209 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1396 263 202 20 20 chr9 106418988 106419089 -17657083 + (TG)n Simple_repeat Simple_repeat 2 102 0 9 1396 374 296 62 44 chr9 106419089 106419202 -17656970 - ID_B1 SINE B4 -23 201 87 9 1396 234 0 0 0 chr9 106419215 106419241 -17656931 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1396 1147 88 0 0 chr9 106419244 106419391 -17656781 - B1_Mus1 SINE Alu -1 147 1 9 1396 263 175 140 0 chr9 106419395 106419452 -17656720 - PB1D10 SINE Alu -1 116 52 9 1396 525 292 0 0 chr9 106419464 106419611 -17656561 + L1MC1 LINE L1 5636 5782 -551 9 1396 4001 105 102 57 chr9 106419770 106420419 -17655753 + RLTR33 LTR ERVK 1 678 0 9 1396 331 257 98 43 chr9 106420419 106420604 -17655568 + L1MC1 LINE L1 5778 5965 -2030 9 1396 382 183 129 0 chr9 106420616 106420712 -17655460 - PB1D10 SINE Alu -37 112 1 9 1396 266 264 33 44 chr9 106420639 106420730 -17655442 - MT2B LTR ERVL -357 244 155 9 1396 1330 73 6 0 chr9 106420726 106420903 -17655269 - B2_Mm1t SINE B2 -4 189 12 9 1396 198 0 0 0 chr9 106420912 106420934 -17655238 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 9 1396 407 264 92 31 chr9 106420989 106421184 -17654988 + L1MC1 LINE L1 6114 6320 -13 9 1396 286 224 17 0 chr9 106421221 106421279 -17654893 + RSINE1 SINE B4 8 66 -99 9 1396 234 291 0 18 chr9 106421475 106421531 -17654641 + polypyrimidine Low_complexity Low_complexity 2 56 0 9 1396 816 217 15 31 chr9 106421531 106421712 -17654460 - ID_B1 SINE B4 -47 245 68 9 1396 688 283 87 42 chr9 106421755 106422090 -17654082 - L1M4 LINE L1 -1885 4261 3912 9 1396 963 242 43 0 chr9 106422780 106422966 -17653206 + B3 SINE B2 11 204 -12 9 1396 195 129 0 0 chr9 106422969 106423000 -17653172 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1396 268 141 30 89 chr9 106423086 106423187 -17652985 + G-rich Low_complexity Low_complexity 1 95 0 9 1396 835 262 84 77 chr9 106423646 106423931 -17652241 - B4A SINE B4 0 292 6 9 1396 722 148 30 45 chr9 106423946 106424080 -17652092 - B1_Mur3 SINE Alu 0 149 18 9 1396 1197 49 0 7 chr9 106424374 106424518 -17651654 - B1_Mm SINE Alu 0 147 5 9 1396 804 249 23 0 chr9 106424558 106424735 -17651437 - B3A SINE B2 -16 182 2 9 1396 438 262 125 0 chr9 106424851 106425011 -17651161 - B3A SINE B2 -16 182 3 9 1396 777 101 18 9 chr9 106425030 106425140 -17651032 - PB1D9 SINE Alu -8 112 2 9 1396 395 273 9 26 chr9 106425844 106425899 -17650273 - MER3 DNA MER1_type -3 206 154 9 1396 1424 62 0 6 chr9 106425899 106426076 -17650096 + B2_Mm2 SINE B2 1 176 -19 9 1396 395 273 9 26 chr9 106426076 106426133 -17650039 - MER3 DNA MER1_type -56 153 96 9 1396 414 57 0 0 chr9 106426231 106426284 -17649888 + (GGGGA)n Simple_repeat Simple_repeat 4 56 0 9 1396 2257 166 51 13 chr9 106426680 106427131 -17649041 + RLTR20B3 LTR ERVK 2 469 -108 9 1396 393 75 0 0 chr9 106427132 106427185 -17648987 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1396 519 198 18 36 chr9 106427229 106427339 -17648833 + RLTR20B3 LTR ERVK 453 560 0 9 1396 261 280 210 0 chr9 106428089 106428189 -17647983 - ID_B1 SINE B4 -22 202 82 9 1396 3041 135 43 6 chr9 106428675 106429183 -17646989 + RLTR11A LTR ERVK 1 527 -1 9 1396 1333 77 27 27 chr9 106429660 106429847 -17646325 - B2_Mm2 SINE B2 -7 188 2 9 1396 758 256 61 29 chr9 106429946 106430232 -17645940 - Lx7 LINE L1 -1546 5927 5628 9 174 1400 272 93 10 chr9 106430222 106430630 -17645542 + Lx8 LINE L1 6450 6891 -582 9 1397 938 263 95 0 chr9 106430884 106431146 -17645026 + RMER1B Other Other 77 363 -703 9 1397 3294 247 132 6 chr9 106431168 106432215 -17643957 + RMER1A Other Other 49 1029 -1 9 1397 860 271 68 18 chr9 106432263 106432722 -17643450 - L1MB8 LINE L1 -242 5937 5441 9 1397 620 118 242 34 chr9 106432952 106432976 -17643196 - B2_Mm1t SINE B2 -13 180 160 9 1397 180 0 0 0 chr9 106432976 106432996 -17643176 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 1397 704 67 272 1 chr9 106432996 106433120 -17643052 - B2_Mm2 SINE B2 -34 159 1 9 1397 3231 241 54 21 chr9 106433127 106433919 -17642253 - RMER1C Other Other -1 1341 524 9 1397 702 224 7 7 chr9 106433963 106434107 -17642065 - B1_Mur2 SINE Alu 0 149 6 9 1397 267 191 88 22 chr9 106434133 106434224 -17641948 - L1MB8 LINE L1 -769 5409 5313 9 1397 691 224 14 7 chr9 106434663 106434807 -17641365 + B1_Mm SINE Alu 1 145 -2 9 1397 1134 110 60 6 chr9 106434962 106435145 -17641027 - B2_Mm2 SINE B2 -1 194 2 9 1397 24 0 0 0 chr9 106435154 106435178 -17640994 + AT_rich Low_complexity Low_complexity 1 24 0 9 1397 655 168 293 0 chr9 106435183 106435350 -17640822 + B3 SINE B2 1 216 0 9 1397 183 184 0 0 chr9 106435406 106435444 -17640728 + (TATG)n Simple_repeat Simple_repeat 4 41 0 9 1397 243 0 0 0 chr9 106435561 106435588 -17640584 + (TATG)n Simple_repeat Simple_repeat 2 28 0 9 1397 708 158 0 9 chr9 106435592 106435707 -17640465 - B1_Mur1 SINE Alu -13 136 23 9 1397 25 0 0 0 chr9 106435812 106435837 -17640335 + AT_rich Low_complexity Low_complexity 1 25 0 9 1397 357 285 31 56 chr9 106435894 106436054 -17640118 - Lx9 LINE L1 -206 7438 7283 9 1397 2180 151 36 36 chr9 106436464 106436848 -17639324 - ORR1C2 LTR MaLR 0 384 1 9 1397 380 258 77 15 chr9 106437179 106437309 -17638863 + B4A SINE B4 6 143 -149 9 1397 856 226 159 38 chr9 106437339 106437684 -17638488 - L1M2 LINE L1 -611 5701 5315 9 1397 21 0 0 0 chr9 106437844 106437865 -17638307 + AT_rich Low_complexity Low_complexity 1 21 0 9 1397 297 321 8 8 chr9 106438183 106438315 -17637857 + ORR1E LTR MaLR 14 145 -214 9 1397 322 272 55 122 chr9 106438319 106438547 -17637625 + ORR1E LTR MaLR 80 297 -62 9 1397 514 274 0 0 chr9 106438547 106438653 -17637519 - PB1D10 SINE Alu -11 106 1 9 1397 322 272 55 122 chr9 106438653 106438679 -17637493 + ORR1E LTR MaLR 298 317 -42 9 1397 190 292 50 110 chr9 106438740 106438840 -17637332 - L4 LINE RTE -503 1526 1433 9 1397 480 289 25 34 chr9 106438963 106439081 -17637091 - PB1D10 SINE Alu 0 117 1 9 1397 495 296 0 0 chr9 106438989 106439087 -17637085 - ID_B1 SINE B4 -51 173 76 9 1397 264 122 0 0 chr9 106439102 106439143 -17637029 + (CAT)n Simple_repeat Simple_repeat 2 42 0 9 1397 884 169 0 13 chr9 106439143 106439284 -17636888 - B1_Mur2 SINE Alu -9 140 1 9 1397 374 279 127 37 chr9 106439646 106439780 -17636392 + B4 SINE B4 1 146 -146 9 1397 1263 111 2 4 chr9 106439854 106440376 -17635796 + (CA)n Simple_repeat Simple_repeat 1 521 0 9 1397 509 292 48 7 chr9 106440376 106440521 -17635651 + B4A SINE B4 92 242 -50 9 1397 657 196 113 0 chr9 106440835 106440968 -17635204 - B1_Mus1 SINE Alu 0 148 1 9 1397 247 311 76 43 chr9 106440999 106441184 -17634988 - B3A SINE B2 -7 191 1 9 1397 615 137 67 82 chr9 106441321 106441439 -17634733 + B1_Mus1 SINE Alu 1 116 -32 9 1397 570 15 0 0 chr9 106441439 106441506 -17634666 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1397 615 137 67 82 chr9 106441506 106441522 -17634650 + B1_Mus1 SINE Alu 117 133 -15 9 1397 1069 199 55 5 chr9 106441561 106441763 -17634409 + B3 SINE B2 1 212 -4 9 1397 384 203 0 0 chr9 106441948 106442007 -17634165 - RSINE1 SINE B4 -96 69 11 9 1397 2085 166 30 3 chr9 106442425 106442787 -17633385 - ORR1D1 LTR MaLR -2 372 1 9 1397 778 225 88 37 chr9 106442792 106443009 -17633163 + ORR1D2 LTR MaLR 133 360 -10 9 1397 400 267 95 76 chr9 106443032 106443243 -17632929 - L1MB7 LINE L1 -116 6068 5854 9 1397 315 214 0 0 chr9 106443292 106443348 -17632824 - RSINE1 SINE B4 -2 163 108 9 1397 354 225 261 41 chr9 106443357 106443552 -17632620 - Lx8 LINE L1 0 7473 7236 9 1397 346 93 26 26 chr9 106443553 106443630 -17632542 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 9 1397 2629 307 80 19 chr9 106443631 106444628 -17631544 - Lx8 LINE L1 -248 7225 6177 9 1397 284 48 0 23 chr9 106444628 106444671 -17631501 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1397 2629 307 80 19 chr9 106444671 106444716 -17631456 - Lx8 LINE L1 -1297 6176 6120 9 1397 610 217 26 0 chr9 106444775 106444890 -17631282 - RSINE1 SINE B4 -45 120 3 9 1397 201 259 146 37 chr9 106446198 106446362 -17629810 + MIRb SINE MIR 1 181 -87 9 1397 998 232 21 0 chr9 106447450 106447644 -17628528 - B3 SINE B2 -5 211 14 9 1397 505 173 8 0 chr9 106447645 106447753 -17628419 + MTC LTR MaLR 2 113 -306 9 1397 346 143 33 46 chr9 106447746 106447849 -17628323 + B1_Mus2 SINE Alu 47 148 -1 9 1397 1229 96 28 0 chr9 106447862 106448040 -17628132 + B2_Mm2 SINE B2 1 183 -12 9 1397 387 0 0 0 chr9 106448040 106448083 -17628089 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 9 1397 252 86 0 0 chr9 106448103 106448138 -17628034 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1397 758 52 0 0 chr9 106448138 106448234 -17627938 - B1_Mus2 SINE Alu 0 147 52 9 1397 1460 123 146 8 chr9 106448230 106448483 -17627689 + MTC LTR MaLR 103 390 -31 9 1397 212 0 0 35 chr9 106448483 106448512 -17627660 + (TTTTTG)n Simple_repeat Simple_repeat 6 33 0 9 1397 1234 40 0 20 chr9 106448512 106448663 -17627509 - B1_Mus1 SINE Alu 0 148 1 9 1397 218 105 26 0 chr9 106448687 106448725 -17627447 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 9 1397 2034 254 77 122 chr9 106448755 106449598 -17626574 + RLTR22_Mur LTR ERVK 1 805 -1043 9 1397 387 288 25 33 chr9 106449827 106449949 -17626223 + RLTR22_Mur LTR ERVK 1689 1809 -39 9 1397 240 293 25 74 chr9 106449936 106450017 -17626155 - ID4 SINE ID -74 78 2 9 1397 499 243 9 0 chr9 106450083 106450190 -17625982 - RSINE1 SINE B4 -55 110 3 9 1397 615 39 0 0 chr9 106450312 106450390 -17625782 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1397 792 211 162 0 chr9 106450396 106450581 -17625591 + B3 SINE B2 2 216 0 9 1397 1061 140 29 23 chr9 106451161 106451336 -17624836 - B2_Mm2 SINE B2 -14 181 6 9 1397 205 244 0 0 chr9 106451500 106451545 -17624627 + CT-rich Low_complexity Low_complexity 1 45 0 9 1397 734 60 10 0 chr9 106451545 106451645 -17624527 + (TTTTC)n Simple_repeat Simple_repeat 4 104 0 9 1397 1003 135 11 6 chr9 106451645 106451824 -17624348 + CT-rich Low_complexity Low_complexity 1 180 0 9 1397 1504 0 0 11 chr9 106451830 106452008 -17624164 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 9 1397 1236 118 17 0 chr9 106452014 106452192 -17623980 - B2_Mm2 SINE B2 -14 181 1 1 1397 411 232 191 34 chr9 106452616 106452670 -17623502 - MT2B2 LTR ERVL -2 582 512 1 1397 234 62 0 0 chr9 106452670 106452702 -17623470 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1397 411 232 191 34 chr9 106452702 106452794 -17623378 - MT2B2 LTR ERVL -73 511 413 1 1397 338 140 0 0 chr9 106452911 106452961 -17623211 - MT2B LTR ERVL -551 50 1 1 1397 181 242 158 123 chr9 106453047 106453193 -17622979 - L2a LINE L2 -259 3167 3017 1 1397 892 259 0 14 chr9 106453473 106453692 -17622480 + B3 SINE B2 1 216 0 1 1397 1325 193 347 18 chr9 106453725 106454126 -17622046 + MT2A LTR ERVL 1 533 0 1 1397 212 77 0 25 chr9 106455399 106455439 -17620733 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1397 304 164 87 11 chr9 106455442 106455531 -17620641 - B1_Mus2 SINE Alu 0 149 53 1 1397 360 0 0 0 chr9 106455671 106455711 -17620461 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1397 236 288 62 9 chr9 106456248 106456360 -17619812 + MER94 DNA AcHobo 2 119 -15 1 1397 2465 93 16 0 chr9 106457148 106457469 -17618703 + ORR1A3 LTR MaLR 1 326 0 1 1397 8764 161 70 14 chr9 106457469 106459165 -17617007 + ORR1A3-int LTR MaLR 1 1791 -1 1 1397 2269 95 22 0 chr9 106459168 106459484 -17616688 + ORR1A3 LTR MaLR 3 325 -1 1 1397 251 277 62 9 chr9 106459590 106459703 -17616469 + MER94 DNA AcHobo 2 120 -14 1 1397 203 0 37 0 chr9 106460501 106460528 -17615644 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1 1397 208 175 17 34 chr9 106460531 106460590 -17615582 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 1 1397 1068 93 17 0 chr9 106460590 106460762 -17615410 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 1 1397 1186 92 0 0 chr9 106461140 106461293 -17614879 + B2_Mm2 SINE B2 2 154 -41 1 1397 414 0 0 0 chr9 106461294 106461340 -17614832 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1 1397 441 0 0 0 chr9 106461960 106462009 -17614163 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1397 495 0 0 0 chr9 106462009 106462063 -17614109 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1397 1939 150 21 45 chr9 106462631 106463051 -17613121 + RMER17C LTR ERVK 1 410 0 1 1397 1700 191 84 39 chr9 106463375 106463730 -17612442 + ORR1C1 LTR MaLR 1 371 -7 1 1397 32 26 0 0 chr9 106465241 106465280 -17610892 + AT_rich Low_complexity Low_complexity 1 39 0 1 1397 530 336 38 88 chr9 106465392 106465757 -17610415 + ORR1E LTR MaLR 1 347 -12 1 1397 206 211 0 0 chr9 106466461 106466499 -17609673 + CT-rich Low_complexity Low_complexity 5 42 0 1 1397 364 300 36 18 chr9 106466616 106466728 -17609444 - B3A SINE B2 -71 127 14 1 1397 645 129 109 25 chr9 106466971 106467090 -17609082 + B1_Mur2 SINE Alu 21 149 0 1 1397 611 74 0 0 chr9 106467105 106467186 -17608986 + B1_Mus1 SINE Alu 9 89 -59 1 1397 1093 75 0 0 chr9 106467186 106467320 -17608852 - B1_Mus2 SINE Alu -13 134 1 1 1397 438 231 67 9 chr9 106467712 106467817 -17608355 - RSINE1 SINE B4 -2 163 53 1 1397 2794 160 88 10 chr9 106467817 106468329 -17607843 + RMER1A Other Other 476 1027 -3 1 1397 3224 133 49 116 chr9 106468404 106469092 -17607080 + RLTR26 LTR ERVK 1 642 0 1 1397 296 265 11 11 chr9 106469093 106469195 -17606977 + L1MB5 LINE L1 5387 5488 -690 1 1397 693 223 38 0 chr9 106469196 106469353 -17606819 - Lx9 LINE L1 -611 7033 6871 1 1397 21 0 0 0 chr9 106469356 106469377 -17606795 + AT_rich Low_complexity Low_complexity 1 21 0 1 1397 272 340 65 9 chr9 106469601 106469815 -17606357 + L1MB5 LINE L1 5878 6103 -71 1 1397 567 43 0 0 chr9 106469862 106469932 -17606240 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1397 553 90 11 11 chr9 106471220 106471241 -17604931 + (GAA)n Simple_repeat Simple_repeat 3 23 0 1 1397 1311 69 0 0 chr9 106471241 106471416 -17604756 + (GGAGAA)n Simple_repeat Simple_repeat 3 177 0 1 1397 553 90 11 11 chr9 106471416 106471484 -17604688 + (GAA)n Simple_repeat Simple_repeat 3 71 0 1 1397 242 304 62 62 chr9 106471596 106471740 -17604432 + MIRm SINE MIR 23 166 -110 1 1397 1165 194 19 5 chr9 106471752 106471959 -17604213 - B3 SINE B2 -6 210 1 1 1397 233 75 0 24 chr9 106472230 106472271 -17603901 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1397 1224 61 0 0 chr9 106472271 106472418 -17603754 - B1_Mus1 SINE Alu -1 147 1 1 1397 322 301 53 0 chr9 106473807 106473920 -17602252 + L1M5 LINE L1 5561 5679 -485 1 1397 665 283 12 35 chr9 106473944 106474116 -17602056 + ID_B1 SINE B4 26 193 -31 1 1397 785 54 9 0 chr9 106474124 106474235 -17601937 + (CA)n Simple_repeat Simple_repeat 2 113 0 1 1397 455 333 6 30 chr9 106474235 106474399 -17601773 + RSINE1 SINE B4 4 163 -2 1 1397 331 291 91 76 chr9 106474409 106474606 -17601566 + L1MB8 LINE L1 5679 5878 -300 1 1397 446 184 110 20 chr9 106474906 106475006 -17601166 + PB1D9 SINE Alu 5 113 -7 1 1397 253 120 0 206 chr9 106475066 106475098 -17601074 - B3 SINE B2 -166 50 23 1 1397 7103 122 34 20 chr9 106475098 106476197 -17599975 + RLTR13D3 LTR ERVK 1 1114 0 1 1397 253 120 0 206 chr9 106476197 106476227 -17599945 - B3 SINE B2 -194 22 1 1 1397 194 222 19 0 chr9 106476245 106476299 -17599873 + CT-rich Low_complexity Low_complexity 2 56 0 1 1397 502 234 48 41 chr9 106476301 106476448 -17599724 - B1_Mur1 SINE Alu 0 149 2 1 1397 672 301 55 70 chr9 106477020 106477349 -17598823 - RLTR23 LTR ERV1 0 430 107 1 1397 1369 200 129 37 chr9 106477328 106477707 -17598465 + RMER10A LTR ERVL 24 437 -5 1 1397 1044 151 0 0 chr9 106477721 106477900 -17598272 + CT-rich Low_complexity Low_complexity 1 179 0 1 1397 465 333 0 0 chr9 106477959 106478076 -17598096 - B4 SINE B4 -92 200 84 1 1397 453 267 17 32 chr9 106478155 106478300 -17597872 - B4 SINE B4 -82 142 4 1 1397 346 289 30 40 chr9 106478962 106479063 -17597109 - MTD LTR MaLR 0 374 275 1 1397 4396 131 19 8 chr9 106479250 106479920 -17596252 + RLTR33 LTR ERVK 1 678 0 1 1397 550 199 72 68 chr9 106479952 106480140 -17596032 - MTD LTR MaLR -202 172 1 1 1397 4909 208 132 28 chr9 106480155 106480379 -17595793 - MTD-int LTR MaLR -23 1347 1101 1 1397 1070 223 81 96 chr9 106480379 106480826 -17595346 - RMER10A LTR ERVL -2 440 1 1 1397 4909 208 132 28 chr9 106480826 106481821 -17594351 - MTD-int LTR MaLR -270 1100 1 1 1397 1321 233 144 47 chr9 106481821 106482012 -17594160 - MTD LTR MaLR 0 419 211 1 1397 1407 51 79 0 chr9 106482012 106482030 -17594142 - B2_Mm1a SINE B2 0 193 176 1 1397 402 21 0 0 chr9 106482030 106482077 -17594095 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1397 1407 51 79 0 chr9 106482077 106482236 -17593936 - B2_Mm1a SINE B2 -18 175 3 1 1397 1321 233 144 47 chr9 106482236 106482404 -17593768 - MTD LTR MaLR -209 210 25 1 1397 1489 242 14 11 chr9 106482486 106482845 -17593327 + RMER15-int LTR ERVL 1508 1867 -3132 1 1397 3004 145 134 14 chr9 106482989 106483549 -17592623 - RMER20B LTR ERVK 0 627 1 1 1397 881 231 104 54 chr9 106483621 106483900 -17592272 - RMER21B LTR ERV1 -275 567 275 1 1397 1677 257 43 9 chr9 106483929 106484350 -17591822 + RMER15-int LTR ERVL 1965 2399 -2600 1 1397 288 200 0 62 chr9 106484336 106484400 -17591772 + RMER15-int LTR ERVL 4033 4092 -907 1 1397 2689 236 32 18 chr9 106484411 106485011 -17591161 + RMER15-int LTR ERVL 4163 4770 -229 1 1397 2930 164 48 29 chr9 106485164 106485722 -17590450 + RMER15 LTR ERVL 4 572 -3 1 1397 522 225 283 3 chr9 106486019 106486344 -17589828 + L1M2 LINE L1 2137 2552 -3591 1 1397 316 292 74 34 chr9 106486452 106486601 -17589571 + L1MC4 LINE L1 6922 7076 -966 1 1397 180 97 0 0 chr9 106486649 106486680 -17589492 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1397 355 279 25 19 chr9 106486726 106486887 -17589285 + L1MD LINE L1 3349 3510 -2636 1 1397 39634 40 7 1 chr9 106486887 106493205 -17582967 - L1Md_T LINE L1 -1 6581 284 1 1397 799 259 134 37 chr9 106493684 106494250 -17581922 + L1MD LINE L1 3306 3926 -2220 1 1397 435 268 197 0 chr9 106494256 106494383 -17581789 + B4A SINE B4 8 159 -133 1 1397 988 224 135 40 chr9 106494385 106494808 -17581364 + L1MD LINE L1 4103 4565 -1581 1 1397 373 320 109 9 chr9 106494837 106495067 -17581105 - L1MDa LINE L1 -6111 522 270 1 1397 457 221 0 0 chr9 106495089 106495184 -17580988 + L1MD LINE L1 4072 4166 -1980 1 1397 236 200 18 35 chr9 106495197 106495254 -17580918 - L1MDa LINE L1 -6424 209 154 1 1397 492 18 0 0 chr9 106495281 106495338 -17580834 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1397 721 83 0 0 chr9 106496350 106496446 -17579726 - MusHAL1 LINE L1 -1641 1071 976 1 1397 496 252 73 40 chr9 106496447 106496571 -17579601 + B3A SINE B2 20 147 -51 1 1397 281 26 26 0 chr9 106496575 106496613 -17579559 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1397 709 121 40 5 chr9 106496637 106496861 -17579311 + (TG)n Simple_repeat Simple_repeat 1 231 0 1 1397 180 0 0 0 chr9 106496864 106496884 -17579288 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1397 804 60 12 35 chr9 106496897 106497035 -17579137 - B1_Mm SINE Alu -2 147 15 1 1397 889 247 21 4 chr9 106497073 106497281 -17578891 + B3A SINE B2 4 214 -2 1 1397 345 202 211 56 chr9 106498484 106498650 -17577522 + MLT1C LTR MaLR 2 196 -309 1 1397 716 286 63 60 chr9 106498651 106498919 -17577253 + B4A SINE B4 2 270 -22 1 1397 492 18 0 0 chr9 106498970 106499027 -17577145 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1397 406 318 96 29 chr9 106499057 106499297 -17576875 + MLT1C LTR MaLR 207 462 -5 1 1397 269 178 0 0 chr9 106499950 106499995 -17576177 + B1F2 SINE Alu 16 60 -89 1 1397 296 219 13 26 chr9 106500001 106500082 -17576090 + B1F SINE Alu 70 148 -2 1 1397 243 0 0 0 chr9 106500224 106500251 -17575921 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2 1397 1229 65 0 0 chr9 106500252 106500405 -17575767 - B2_Mm2 SINE B2 -41 154 2 3 1397 576 0 0 0 chr9 106500509 106500573 -17575599 + (CAG)n Simple_repeat Simple_repeat 1 64 0 4 1397 625 225 35 7 chr9 106501074 106501217 -17574955 - LTR75 LTR ERVL -220 342 196 5 1397 390 287 65 8 chr9 106501967 106502143 -17574029 + L2a LINE L2 3180 3426 0 6 1397 827 283 40 85 chr9 106502436 106502885 -17573287 - MTC LTR MaLR -14 407 5 7 1397 426 180 17 130 chr9 106503296 106503312 -17572860 + MT2B LTR ERVL 155 256 -345 8 1397 708 103 0 20 chr9 106503312 106503411 -17572761 + B1_Mur4 SINE Alu 8 104 -46 9 1397 715 252 0 0 chr9 106503455 106503590 -17572582 + B1_Mur1 SINE Alu 2 136 -13 1 1397 31 0 0 0 chr9 106503814 106503845 -17572327 + AT_rich Low_complexity Low_complexity 1 31 0 1 1397 314 315 19 0 chr9 106503849 106503957 -17572215 + Charlie7 DNA MER1_type 2042 2151 -461 1 1397 306 263 56 83 chr9 106504214 106504322 -17571850 + L1M5 LINE L1 5330 5434 -690 1 1397 231 365 36 6 chr9 106504344 106504512 -17571660 + L1M5 LINE L1 5492 5664 -460 1 1397 250 250 144 14 chr9 106504517 106504588 -17571584 + PB1D10 SINE Alu 1 82 -45 1 1397 230 338 27 0 chr9 106505119 106505193 -17570979 - MLT1N2 LTR MaLR -484 78 3 1 1397 548 93 10 0 chr9 106505255 106505352 -17570820 + (CAAAC)n Simple_repeat Simple_repeat 2 99 0 1 1397 1362 87 0 11 chr9 106505586 106505772 -17570400 + B2_Mm2 SINE B2 2 185 -10 1 1397 405 0 0 0 chr9 106506000 106506045 -17570127 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1397 424 356 60 60 chr9 106506050 106506417 -17569755 + L1M5 LINE L1 3097 3463 -2683 1 1397 1211 137 81 5 chr9 106506460 106506658 -17569514 + B3 SINE B2 4 216 0 2 1397 835 184 22 0 chr9 106506811 106506947 -17569225 + B1F SINE Alu 1 139 -10 2 1397 1574 300 122 37 chr9 106507508 106508394 -17567778 - Lx8 LINE L1 -378 7095 6135 2 1397 1333 133 31 27 chr9 106508438 106508662 -17567510 - URR1B DNA MER1_type 0 225 1 2 1397 848 132 13 7 chr9 106508704 106508856 -17567316 + ORR1B1 LTR MaLR 1 153 -241 2 1397 776 203 128 5 chr9 106508863 106509051 -17567121 + B3 SINE B2 1 211 -5 2 1397 457 67 0 0 chr9 106509051 106509111 -17567061 + ORR1B1 LTR MaLR 327 386 -8 2 1397 269 287 9 56 chr9 106509575 106509682 -17566490 - PB1D10 SINE Alu -13 104 3 2 1397 1235 54 0 0 chr9 106509754 106509902 -17566270 + B1_Mus1 SINE Alu 1 148 0 2 1397 202 104 62 0 chr9 106509903 106509951 -17566221 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 2 1397 852 39 0 0 chr9 106509951 106510055 -17566117 + (GGGAA)n Simple_repeat Simple_repeat 3 106 0 3 1397 249 57 0 0 chr9 106510055 106510090 -17566082 + (CAAAG)n Simple_repeat Simple_repeat 1 35 0 3 1397 331 279 94 31 chr9 106510111 106510207 -17565965 + PB1D10 SINE Alu 3 104 -13 3 1397 313 278 164 69 chr9 106510221 106510495 -17565677 + L1M5 LINE L1 5102 5401 -745 1 1397 254 232 57 135 chr9 106510608 106510667 -17565505 + MT2B LTR ERVL 107 158 -426 3 1397 515 209 0 0 chr9 106510667 106510758 -17565414 + PB1D10 SINE Alu 1 91 -26 3 1397 198 71 0 0 chr9 106510764 106510792 -17565380 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1397 1011 234 167 13 chr9 106511221 106511532 -17564640 + ORR1E LTR MaLR 1 359 0 3 1397 180 0 0 0 chr9 106511618 106511638 -17564534 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 3 1397 1197 75 86 6 chr9 106511941 106512116 -17564056 + B2_Mm2 SINE B2 2 190 -5 3 1397 458 278 92 12 chr9 106512256 106512507 -17563665 + L1MEc LINE L1 222 492 -5908 3 1397 2528 216 103 28 chr9 106512597 106513265 -17562907 - RCHARR1 DNA MER1_type -15 959 242 4 1397 680 263 147 9 chr9 106514271 106514482 -17561690 - RCHARR1 DNA MER1_type -732 242 3 4 1397 1349 228 108 36 chr9 106514491 106514964 -17561208 + L1MEc LINE L1 606 1112 -5288 3 1397 369 294 151 73 chr9 106515330 106515874 -17560298 + L1MB5 LINE L1 38 623 -5919 4 1397 868 282 41 27 chr9 106515895 106516089 -17560083 + Lx8 LINE L1 6312 6510 -963 4 1397 1675 119 222 15 chr9 106516089 106516413 -17559759 + ORR1B1 LTR MaLR 4 394 0 4 1397 868 282 41 27 chr9 106516413 106516513 -17559659 + Lx8 LINE L1 6511 6610 -863 4 1397 614 213 66 56 chr9 106516514 106516802 -17559370 - RMER17C LTR ERVK -32 378 88 4 1397 459 154 40 145 chr9 106516829 106517132 -17559040 - RMER17A2 LTR ERVK -417 489 212 4 1397 1611 282 104 18 chr9 106517150 106517775 -17558397 + Lx8 LINE L1 6606 7284 -189 4 1397 405 0 0 0 chr9 106517776 106517821 -17558351 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1397 604 241 105 0 chr9 106517821 106517954 -17558218 - B3 SINE B2 -68 148 2 4 1397 1725 253 58 142 chr9 106517973 106518710 -17557462 + MER54B LTR ERVL 112 786 -7 4 1397 503 302 43 83 chr9 106520422 106520700 -17555472 + L1MB5 LINE L1 682 948 -5594 4 1397 21 0 0 0 chr9 106520804 106520825 -17555347 + AT_rich Low_complexity Low_complexity 1 21 0 4 1397 291 301 55 64 chr9 106520851 106520866 -17555306 + PB1D9 SINE Alu 5 20 -100 5 1397 315 0 0 0 chr9 106520866 106520901 -17555271 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1397 365 264 23 27 chr9 106520901 106521014 -17555158 + B1F1 SINE Alu 21 142 -7 5 1397 619 250 32 13 chr9 106521030 106521188 -17554984 + B4A SINE B4 46 206 -86 5 1397 228 305 47 126 chr9 106521053 106521069 -17555103 + MT2B2 LTR ERVL 142 182 -402 5 1397 373 284 21 56 chr9 106521069 106521211 -17554961 + B1F2 SINE Alu 1 137 -12 5 1397 228 305 47 126 chr9 106521211 106521267 -17554905 + MT2B2 LTR ERVL 183 338 -246 5 1397 1421 265 93 86 chr9 106521285 106521928 -17554244 + L1MB5 LINE L1 4698 5341 -1303 4 1397 691 200 69 0 chr9 106521928 106522058 -17554114 - B1_Mur2 SINE Alu -10 139 1 5 1397 1421 265 93 86 chr9 106522058 106522204 -17553968 + L1MB5 LINE L1 5342 5494 -1150 4 1397 4073 80 20 7 chr9 106522204 106522746 -17553426 + L1_Mus1 LINE L1 6018 6566 -1 5 1397 1421 265 93 86 chr9 106522746 106522776 -17553396 + L1MB5 LINE L1 5495 5530 -1114 4 1397 746 193 259 0 chr9 106522776 106522942 -17553230 + B3 SINE B2 2 210 -6 5 1397 1421 265 93 86 chr9 106522942 106523052 -17553120 + L1MB5 LINE L1 5531 5636 -1008 4 1397 1710 181 67 33 chr9 106523057 106523417 -17552755 - ORR1D1 LTR MaLR -2 372 1 5 1397 338 141 0 2 chr9 106523508 106523561 -17552611 - ORR1D1 LTR MaLR -286 73 22 5 1397 299 298 16 102 chr9 106523566 106523611 -17552561 + MT2B LTR ERVL 125 158 -443 6 1397 563 158 126 19 chr9 106523611 106523714 -17552458 + B1_Mus1 SINE Alu 3 116 -1 6 1397 370 235 47 11 chr9 106523719 106523866 -17552306 + L1MB5 LINE L1 5863 6014 -668 4 1397 463 273 97 24 chr9 106524041 106524206 -17551966 - B3A SINE B2 -18 180 4 6 1397 386 316 143 32 chr9 106524209 106524671 -17551501 + L1MB5 LINE L1 6158 6670 -2 4 1397 333 47 0 0 chr9 106524671 106524714 -17551458 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1397 897 255 66 29 chr9 106525112 106525354 -17550818 + B4A SINE B4 7 257 -35 6 1397 328 274 9 54 chr9 106525451 106525563 -17550609 - MLT1A1 LTR MaLR 0 408 302 6 1397 459 335 162 7 chr9 106526574 106526871 -17549301 - Arthur1B DNA Tip100 -1 1224 882 6 1397 435 38 0 0 chr9 106526950 106527003 -17549169 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1397 593 277 81 135 chr9 106527031 106527095 -17549077 - B4A SINE B4 -12 280 227 6 1397 1407 65 0 36 chr9 106527095 106527288 -17548884 - B2_Mm2 SINE B2 -9 186 1 6 1397 593 277 81 135 chr9 106527288 106527519 -17548653 - B4A SINE B4 -66 226 1 6 1397 298 324 0 0 chr9 106527583 106527651 -17548521 + ID4_ SINE ID 3 70 -13 7 1397 787 246 75 0 chr9 106527779 106527966 -17548206 + B3 SINE B2 15 215 -1 7 1397 1177 50 0 28 chr9 106527986 106528131 -17548041 + B1_Mus1 SINE Alu 2 142 -6 7 1397 306 0 0 0 chr9 106528132 106528166 -17548006 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1397 234 0 0 0 chr9 106528166 106528191 -17547981 + (TA)n Simple_repeat Simple_repeat 1 26 0 7 1397 2175 168 49 16 chr9 106529030 106529416 -17546756 - MTB_Mm LTR MaLR -8 399 1 7 1397 490 355 0 0 chr9 106530992 106531164 -17545008 + (TG)n Simple_repeat Simple_repeat 1 172 0 7 1397 761 259 65 0 chr9 106532714 106532788 -17543384 + ID_B1 SINE B4 6 90 -134 7 1397 357 263 9 100 chr9 106532788 106532898 -17543274 + PB1D10 SINE Alu 1 100 -17 7 1397 997 147 16 28 chr9 106533539 106533721 -17542451 + B2_Mm2 SINE B2 2 181 -14 7 1397 474 110 45 18 chr9 106533725 106533836 -17542336 + GA-rich Low_complexity Low_complexity 5 118 0 8 1397 1428 222 104 6 chr9 106533929 106534256 -17541916 + MTEb LTR MaLR 20 378 -1 8 1397 277 330 111 74 chr9 106534343 106534693 -17541479 - MLT1J LTR MaLR -21 491 129 8 1397 497 124 2 5 chr9 106535050 106535146 -17541026 - L1_Mur3 LINE L1 -3059 2818 2724 8 1397 1278 111 17 0 chr9 106535163 106535344 -17540828 - B2_Mm2 SINE B2 -9 186 3 8 1397 298 371 0 0 chr9 106535550 106535639 -17540533 - B4A SINE B4 -167 125 37 8 1397 21 0 0 0 chr9 106536401 106536422 -17539750 + AT_rich Low_complexity Low_complexity 1 21 0 8 1397 1099 116 64 0 chr9 106536428 106536601 -17539571 + B2_Mm2 SINE B2 3 186 -9 8 1397 690 251 47 6 chr9 106536694 106536866 -17539306 + B3A SINE B2 2 180 -18 8 1397 244 234 0 46 chr9 106537072 106537137 -17539035 + B1F2 SINE Alu 1 62 -87 8 1397 462 279 36 0 chr9 106537166 106537277 -17538895 + PB1D7 SINE Alu 1 115 -34 9 1397 844 94 48 61 chr9 106537288 106537435 -17538737 + B1_Mur4 SINE Alu 5 149 -1 9 1397 1115 114 0 6 chr9 106537457 106537633 -17538539 + (GGAA)n Simple_repeat Simple_repeat 2 176 0 9 1397 792 98 0 0 chr9 106537807 106537940 -17538232 + (GA)n Simple_repeat Simple_repeat 2 134 0 9 1397 229 281 103 58 chr9 106537947 106538034 -17538138 - RSINE1 SINE B4 -62 103 13 9 1397 231 293 0 17 chr9 106538156 106538215 -17537957 + ID_B1 SINE B4 167 224 0 9 1397 645 251 60 10 chr9 106538226 106538427 -17537745 + L1MC LINE L1 2432 2642 -3504 9 1397 416 300 15 15 chr9 106538419 106538551 -17537621 + L1MA7 LINE L1 4108 4239 -1901 9 1397 619 282 155 14 chr9 106538651 106538870 -17537302 + 7SK RNA RNA 4 253 -78 9 1397 806 259 34 38 chr9 106539042 106539060 -17537112 - B3 SINE B2 -8 208 192 9 1397 1136 112 0 11 chr9 106539060 106539241 -17536931 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1 1397 806 259 34 38 chr9 106539241 106539431 -17536741 - B3 SINE B2 -25 191 2 9 1397 958 249 14 9 chr9 106539446 106539657 -17536515 - B3 SINE B2 -4 212 1 1 1397 1194 250 54 24 chr9 106539657 106540067 -17536105 + L1MA7 LINE L1 4410 4831 -1312 9 1397 207 205 0 0 chr9 106540117 106540156 -17536016 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1397 1013 267 52 22 chr9 106540184 106540452 -17535720 - B4A SINE B4 -16 276 1 1 1397 324 171 239 4 chr9 106540453 106540564 -17535608 + L1MA7 LINE L1 5305 5435 -733 9 1397 382 309 84 6 chr9 106540588 106540767 -17535405 + L1MA7 LINE L1 5493 5685 -627 9 1397 726 234 7 0 chr9 106540774 106540919 -17535253 + B1_Mur2 SINE Alu 4 149 0 1 1397 374 172 30 10 chr9 106540966 106541066 -17535106 + GA-rich Low_complexity Low_complexity 2 103 0 1 1397 574 287 75 34 chr9 106541067 106541334 -17534838 + L1MA7 LINE L1 5685 5962 -329 9 1397 718 221 7 14 chr9 106541334 106541476 -17534696 + ID_B1 SINE B4 84 224 0 1 1397 275 321 64 21 chr9 106541353 106541493 -17534679 - YREP_Mm Unknown Unknown -1517 295 150 1 1397 240 269 113 74 chr9 106541508 106541861 -17534311 + L1MA9 LINE L1 5945 6311 -1 1 1397 247 281 111 41 chr9 106541990 106542161 -17534011 + L1M5 LINE L1 4614 4796 -1350 1 1397 964 221 103 37 chr9 106542616 106542964 -17533208 + HAL1b LINE L1 1620 1990 -19 1 1397 729 206 22 0 chr9 106543011 106543147 -17533025 + B1_Mur2 SINE Alu 1 139 -10 1 1397 384 191 0 0 chr9 106543147 106543231 -17532941 + (CAT)n Simple_repeat Simple_repeat 3 86 0 1 1397 676 240 111 1 chr9 106544410 106544639 -17531533 + B4A SINE B4 1 256 -36 1 1397 233 235 42 136 chr9 106545177 106545295 -17530877 + MER53 DNA hAT 23 129 -64 1 1397 768 213 13 19 chr9 106546218 106546376 -17529796 + B3 SINE B2 26 182 -34 1 1397 658 165 8 69 chr9 106546374 106546504 -17529668 + B1_Mur1 SINE Alu 18 139 -10 1 1397 701 238 97 31 chr9 106546648 106546843 -17529329 + ID_B1 SINE B4 4 211 -13 1 1397 264 248 53 0 chr9 106548759 106548834 -17527338 + L2a LINE L2 3100 3179 -247 1 1397 903 144 249 0 chr9 106550710 106550883 -17525289 - B3 SINE B2 0 216 1 1 1397 384 206 163 0 chr9 106551626 106551718 -17524454 - PB1D7 SINE Alu -12 108 2 1 1397 415 305 35 28 chr9 106551824 106551969 -17524203 + MER2B DNA MER2_type 191 336 0 1 1397 540 155 109 0 chr9 106552159 106552268 -17523904 + B1F SINE Alu 4 123 -26 1 1397 298 0 105 0 chr9 106552285 106552342 -17523830 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 1397 594 0 0 0 chr9 106553906 106553972 -17522200 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1397 198 0 0 0 chr9 106553973 106553995 -17522177 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1397 347 159 43 14 chr9 106554670 106554740 -17521432 + HAL1-3A_ME LINE L1 1977 2048 -810 1 1397 184 278 110 30 chr9 106555459 106555559 -17520613 + MIRc SINE MIR 48 155 -113 1 1397 386 310 139 5 chr9 106555578 106555706 -17520466 - MIR SINE MIR -17 245 104 1 1397 552 68 0 0 chr9 106555706 106555779 -17520393 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 1 1397 386 310 139 5 chr9 106555779 106555851 -17520321 - MIR SINE MIR -159 103 19 1 1397 522 0 0 0 chr9 106555875 106555933 -17520239 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1397 189 121 0 0 chr9 106558082 106558115 -17518057 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 1 1397 234 302 0 53 chr9 106558419 106558552 -17517620 + (CCCCG)n Simple_repeat Simple_repeat 4 129 0 1 1398 248 154 0 19 chr9 106572112 106572165 -17504007 + GA-rich Low_complexity Low_complexity 3 54 0 1 1398 342 262 117 54 chr9 106578483 106578705 -17497467 + L2c LINE L2 2918 3153 -234 1 1398 210 337 56 0 chr9 106580171 106580260 -17495912 - MIR SINE MIR -139 123 30 1 1398 312 137 0 0 chr9 106580519 106580570 -17495602 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1398 233 250 19 0 chr9 106580570 106580622 -17495550 + tRNA-Ala-GCY_ tRNA tRNA 18 70 -5 1 1398 267 328 55 18 chr9 106580657 106580790 -17495382 - MIR SINE MIR -112 156 15 1 1398 308 370 42 15 chr9 106582919 106583145 -17493027 - MIRb SINE MIR -18 250 18 1 1398 861 38 0 0 chr9 106584855 106584960 -17491212 + (GAGAA)n Simple_repeat Simple_repeat 5 109 0 1 1398 230 0 33 0 chr9 106585068 106585098 -17491074 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1398 983 189 68 48 chr9 106585675 106585881 -17490291 + B3 SINE B2 1 210 -6 1 1398 1053 85 0 0 chr9 106585899 106586040 -17490132 + B1_Mus2 SINE Alu 1 141 -6 1 1398 183 42 0 0 chr9 106586041 106586065 -17490107 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1398 1196 41 0 0 chr9 106586113 106586259 -17489913 + B1_Mm SINE Alu 2 147 0 1 1398 890 118 28 0 chr9 106586287 106586431 -17489741 + B1_Mus1 SINE Alu 1 148 0 1 1398 252 288 168 37 chr9 106586732 106586923 -17489249 - MIRb SINE MIR -1 267 52 1 1398 203 250 0 0 chr9 106590959 106591007 -17485165 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1398 262 265 115 0 chr9 106592117 106592206 -17483966 - PB1D10 SINE Alu -13 104 5 1 1398 576 0 0 0 chr9 106594520 106594584 -17481588 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1398 1174 283 35 14 chr9 106596176 106596545 -17479627 + MTEa LTR MaLR 1 377 -2 1 1398 709 206 7 40 chr9 106596630 106596782 -17479390 - B1_Mur1 SINE Alu 0 149 3 1 1398 1150 41 7 0 chr9 106597043 106597188 -17478984 - B1_Mus2 SINE Alu 0 147 2 1 1398 308 311 44 0 chr9 106597190 106597280 -17478892 + L1MC4 LINE L1 7809 7902 -140 1 1398 564 200 0 55 chr9 106597561 106597688 -17478484 - PB1D9 SINE Alu 0 120 1 1 1398 32 0 0 0 chr9 106598826 106598858 -17477314 + AT_rich Low_complexity Low_complexity 1 32 0 1 1398 242 278 0 0 chr9 106598885 106598939 -17477233 - RSINE1 SINE B4 -47 118 65 1 1398 697 114 18 0 chr9 106599036 106599150 -17477022 + B1_Mus1 SINE Alu 33 148 0 1 1398 378 0 0 0 chr9 106599157 106599199 -17476973 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1398 253 305 58 96 chr9 106599199 106599355 -17476817 - MER58B DNA MER1_type -179 162 13 1 1398 188 86 0 28 chr9 106599564 106599577 -17476595 + (CAAA)n Simple_repeat Simple_repeat 2 14 0 1 1398 1175 47 0 0 chr9 106599577 106599725 -17476447 + B1_Mus1 SINE Alu 1 148 0 1 1398 188 86 0 28 chr9 106599725 106599747 -17476425 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 1398 778 114 0 44 chr9 106599896 106600033 -17476139 - B1_Mur2 SINE Alu 0 149 19 1 1398 434 255 45 65 chr9 106599901 106600056 -17476116 - ID_B1 SINE B4 -3 221 70 1 1398 228 186 12 125 chr9 106599990 106600070 -17476102 + YREP_Mm Unknown Unknown 256 326 -1486 1 1398 1176 48 0 0 chr9 106600786 106600932 -17475240 - B1_Mus1 SINE Alu -1 147 2 1 1398 24 0 0 0 chr9 106600938 106600962 -17475210 + AT_rich Low_complexity Low_complexity 1 24 0 1 1398 924 65 0 0 chr9 106601144 106601268 -17474904 + B1_Mus2 SINE Alu 24 147 0 1 1398 601 174 107 8 chr9 106601786 106601908 -17474264 + B1_Mus1 SINE Alu 3 136 -12 1 1398 222 240 0 0 chr9 106601912 106601962 -17474210 + GA-rich Low_complexity Low_complexity 1 50 0 1 1398 180 336 136 0 chr9 106601965 106602075 -17474097 + L2a LINE L2 3301 3425 -1 1 1398 363 288 0 12 chr9 106602092 106602173 -17473999 + RSINE1 SINE B4 3 82 -83 1 1398 342 0 0 0 chr9 106602196 106602234 -17473938 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1 1398 685 250 56 17 chr9 106602234 106602413 -17473759 + B3 SINE B2 31 216 0 1 1398 1316 99 16 5 chr9 106602435 106602627 -17473545 + B2_Mm2 SINE B2 1 194 -1 1 1398 978 113 0 0 chr9 106602634 106602785 -17473387 + (GGAA)n Simple_repeat Simple_repeat 4 154 0 1 1398 1076 95 0 0 chr9 106603283 106603430 -17472742 + B1_Mus2 SINE Alu 1 147 0 1 1398 627 51 0 0 chr9 106603941 106604020 -17472152 + (TCCA)n Simple_repeat Simple_repeat 1 79 0 1 1398 180 77 0 0 chr9 106604080 106604106 -17472066 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 1 1398 300 245 189 0 chr9 106604119 106604225 -17471947 - ID_B1 SINE B4 -22 202 77 1 1398 21 0 0 0 chr9 106604261 106604282 -17471890 + AT_rich Low_complexity Low_complexity 1 21 0 1 1398 438 290 50 37 chr9 106604482 106604643 -17471529 - RSINE1 SINE B4 0 165 3 1 1398 409 299 8 33 chr9 106605349 106605470 -17470702 + RSINE1 SINE B4 44 161 -4 1 1398 192 152 0 0 chr9 106605475 106605508 -17470664 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1398 567 78 0 0 chr9 106605518 106605595 -17470577 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1398 300 279 106 7 chr9 106606880 106606895 -17469277 + L1MEg LINE L1 1785 1803 -4281 1 1398 1140 88 71 6 chr9 106606895 106607077 -17469095 + B2_Mm2 SINE B2 2 195 0 1 1398 300 279 106 7 chr9 106607077 106607202 -17468970 + L1MEg LINE L1 1804 1938 -4146 1 1398 1258 88 16 6 chr9 106607237 106607420 -17468752 + B2_Mm2 SINE B2 2 186 -9 1 1398 292 250 81 35 chr9 106607728 106607815 -17468357 - PB1D10 SINE Alu 0 117 27 1 1398 31 0 0 0 chr9 106608287 106608318 -17467854 + AT_rich Low_complexity Low_complexity 1 31 0 1 1398 591 266 22 44 chr9 106608335 106608516 -17467656 - B3A SINE B2 -18 180 4 1 1398 325 276 61 10 chr9 106608660 106608671 -17467501 + B4 SINE B4 75 90 -202 1 1398 595 151 3 1 chr9 106608671 106608781 -17467391 + B1_Mus1 SINE Alu 1 111 -9 1 1398 337 269 64 18 chr9 106608983 106609093 -17467079 - PB1D10 SINE Alu -1 116 2 1 1398 207 0 0 0 chr9 106609152 106609175 -17466997 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1398 189 94 0 0 chr9 106609178 106609210 -17466962 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1398 500 267 15 0 chr9 106609221 106609356 -17466816 + B1_Mur1 SINE Alu 2 138 -11 1 1398 351 0 0 0 chr9 106609356 106609395 -17466777 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1398 1083 68 0 26 chr9 106609430 106609581 -17466591 + B1_Mus1 SINE Alu 1 147 -1 2 1398 397 278 88 56 chr9 106609807 106609967 -17466205 + MER20 DNA MER1_type 30 194 -25 2 1398 1091 60 0 20 chr9 106611089 106611242 -17464930 + B2_Mm2 SINE B2 2 151 -44 2 1398 312 91 0 0 chr9 106611248 106611292 -17464880 + (GGGAGA)n Simple_repeat Simple_repeat 5 48 0 2 1398 297 278 17 92 chr9 106611543 106611662 -17464510 - MER58C DNA MER1_type -2 213 104 2 1398 841 164 20 0 chr9 106611659 106611805 -17464367 - B1_Mur4 SINE Alu -1 149 1 2 1398 294 260 147 59 chr9 106611874 106611976 -17464196 + PB1D10 SINE Alu 1 111 -9 2 1398 185 211 18 0 chr9 106612162 106612219 -17463953 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 2 1398 983 119 6 17 chr9 106612219 106612398 -17463774 + (GGA)n Simple_repeat Simple_repeat 2 178 0 2 1398 265 286 24 7 chr9 106613749 106613833 -17462339 + B1F SINE Alu 36 125 -2 2 1398 517 235 10 0 chr9 106613858 106613956 -17462216 + PB1D10 SINE Alu 2 100 -17 2 1398 534 103 0 0 chr9 106613957 106614035 -17462137 + (TGAA)n Simple_repeat Simple_repeat 3 80 0 2 1398 321 297 45 0 chr9 106614227 106614338 -17461834 - PB1D10 SINE Alu 0 117 2 2 1398 31 0 0 0 chr9 106614408 106614439 -17461733 + AT_rich Low_complexity Low_complexity 1 31 0 2 1398 901 89 54 36 chr9 106616517 106616684 -17459488 - B2_Mm2 SINE B2 -6 192 27 2 1398 1617 52 0 0 chr9 106616699 106616892 -17459280 + B2_Mm1a SINE B2 1 193 0 2 1398 877 299 126 10 chr9 106616897 106617019 -17459153 + Lx8 LINE L1 6809 6975 -498 2 1398 576 0 0 0 chr9 106617019 106617083 -17459089 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1398 234 105 0 0 chr9 106617083 106617120 -17459052 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1398 877 299 126 10 chr9 106617120 106617401 -17458771 + Lx8 LINE L1 6976 7258 -215 2 1398 225 0 0 0 chr9 106617488 106617513 -17458659 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 2 1398 890 198 79 16 chr9 106617603 106617793 -17458379 - B3 SINE B2 -6 210 9 2 1398 937 136 0 39 chr9 106617935 106618088 -17458084 - B1_Mur1 SINE Alu -1 148 2 2 1398 408 209 0 55 chr9 106619726 106619817 -17456355 - RSINE1 SINE B4 -31 134 49 2 1398 200 254 0 0 chr9 106619854 106619913 -17456259 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1398 300 27 0 0 chr9 106619920 106619957 -17456215 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1398 546 16 0 0 chr9 106619957 106620019 -17456153 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1398 351 0 0 0 chr9 106620822 106620861 -17455311 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1398 469 248 208 0 chr9 106620871 106621020 -17455152 - B3 SINE B2 -36 180 1 2 1398 519 17 0 0 chr9 106621814 106621874 -17454298 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 2 1398 559 228 65 0 chr9 106622088 106622211 -17453961 + RSINE1 SINE B4 3 133 -32 2 1398 225 0 0 0 chr9 106622233 106622258 -17453914 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1398 790 156 52 7 chr9 106622847 106622983 -17453189 + B1_Mur2 SINE Alu 1 142 -7 2 1398 216 131 21 21 chr9 106622994 106623041 -17453131 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 2 1398 345 270 69 128 chr9 106623134 106623440 -17452732 + B4A SINE B4 5 292 0 2 1398 279 0 0 0 chr9 106623514 106623545 -17452627 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1398 522 0 0 0 chr9 106623545 106623602 -17452570 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1398 686 304 79 16 chr9 106623617 106623871 -17452301 + B4A SINE B4 7 276 -16 2 1398 180 125 0 0 chr9 106623932 106623964 -17452208 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1398 502 277 43 0 chr9 106624080 106624221 -17451951 + B1F SINE Alu 2 148 -1 2 1398 246 128 0 0 chr9 106624430 106624469 -17451703 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1398 537 16 0 0 chr9 106624633 106624695 -17451477 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1398 471 232 23 7 chr9 106624785 106624904 -17451268 - PB1D10 SINE Alu -20 129 12 2 1398 224 182 23 0 chr9 106625556 106625600 -17450572 + ID_B1 SINE B4 90 134 -90 2 1398 295 266 25 12 chr9 106625786 106625866 -17450306 - B3 SINE B2 -107 109 29 2 1398 814 235 0 0 chr9 106626313 106626462 -17449710 + B1_Mur2 SINE Alu 1 149 0 2 1398 243 0 0 0 chr9 106626477 106626504 -17449668 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1398 826 258 119 50 chr9 106626624 106627068 -17449104 + RLTR12B LTR ERVK 12 486 -42 2 1398 271 262 0 0 chr9 106628298 106628363 -17447809 + B1F1 SINE Alu 2 66 -51 2 1398 244 263 99 35 chr9 106628482 106628714 -17447458 + L1MC5 LINE L1 7347 7593 -368 2 1398 513 204 182 0 chr9 106628826 106628958 -17447214 - B3A SINE B2 -42 156 1 2 1398 369 245 9 45 chr9 106628981 106629092 -17447080 + B1F SINE Alu 1 107 -42 2 1398 1178 250 43 25 chr9 106629206 106629645 -17446527 + RLTR11A2 LTR ERVK 1 519 -8 2 1398 24 0 0 0 chr9 106629997 106630021 -17446151 + AT_rich Low_complexity Low_complexity 1 24 0 2 1398 688 273 12 0 chr9 106630028 106630189 -17445983 - RSINE1 SINE B4 -2 163 1 2 1398 387 250 99 20 chr9 106630561 106630712 -17445460 + L1M4 LINE L1 4676 4838 -1308 2 1398 370 73 0 0 chr9 106630739 106630794 -17445378 + B1_Mur3 SINE Alu 84 138 -11 2 1398 399 234 29 86 chr9 106630824 106630964 -17445208 + B1F SINE Alu 6 137 -12 2 1398 868 226 43 40 chr9 106631023 106631134 -17445038 - RCHARR1 DNA MER1_type -133 841 728 2 1398 457 226 321 5 chr9 106631134 106631343 -17444829 + B4A SINE B4 2 276 -16 2 1398 868 226 43 40 chr9 106631343 106631535 -17444637 - RCHARR1 DNA MER1_type -247 727 537 2 1398 615 256 14 128 chr9 106631554 106631674 -17444498 + Lx8 LINE L1 7127 7233 -240 2 1398 902 237 45 5 chr9 106631674 106631873 -17444299 - B3 SINE B2 -5 211 5 2 1398 615 256 14 128 chr9 106631873 106631971 -17444201 + Lx8 LINE L1 7234 7320 -153 2 1398 415 207 69 0 chr9 106631976 106632063 -17444109 + B1_Mus1 SINE Alu 1 93 -55 2 1398 423 0 0 0 chr9 106632063 106632110 -17444062 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1398 450 193 17 50 chr9 106632140 106632260 -17443912 + Lx8 LINE L1 7353 7468 -5 2 1398 432 247 54 0 chr9 106632394 106632487 -17443685 - PB1D10 SINE Alu -6 111 14 2 1398 494 209 9 11 chr9 106632405 106632507 -17443665 - ID_B1 SINE B4 -48 176 80 2 1398 568 69 11 0 chr9 106632543 106632630 -17443542 + B2_Mm1t SINE B2 106 193 0 2 1398 343 263 82 33 chr9 106633005 106633127 -17443045 + RSINE1 SINE B4 34 161 -4 2 1398 419 202 16 81 chr9 106633666 106633790 -17442382 - PB1D7 SINE Alu 0 120 5 2 1398 396 264 6 0 chr9 106633862 106633964 -17442208 + AluG_3 SINE Alu 21 223 -88 2 1398 1150 100 6 0 chr9 106633975 106634145 -17442027 + B2_Mm1t SINE B2 1 171 -22 2 1398 486 0 0 0 chr9 106634147 106634201 -17441971 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 2 1398 945 0 0 0 chr9 106634201 106634305 -17441867 + (GAGAA)n Simple_repeat Simple_repeat 2 106 0 2 1398 519 267 14 36 chr9 106634309 106634449 -17441723 + ID_B1 SINE B4 88 224 0 2 1398 29 28 0 0 chr9 106634583 106634619 -17441553 + AT_rich Low_complexity Low_complexity 1 36 0 2 1398 701 179 104 7 chr9 106634623 106634758 -17441414 + B1_Mur4 SINE Alu 3 150 0 2 1398 394 206 87 19 chr9 106634768 106634872 -17441300 + ID_B1 SINE B4 76 186 -38 2 1398 440 239 65 0 chr9 106635051 106635143 -17441029 - RSINE1 SINE B4 -21 144 47 2 1398 278 281 61 0 chr9 106635153 106635235 -17440937 + MTD LTR MaLR 35 121 -298 2 1398 997 145 6 0 chr9 106635233 106635392 -17440780 - B2_Mm2 SINE B2 -35 160 1 2 1398 277 206 260 0 chr9 106635392 106635463 -17440709 + MTD LTR MaLR 105 194 -225 2 1398 821 236 19 60 chr9 106635471 106635687 -17440485 + Lx9 LINE L1 6771 6977 -667 2 1398 765 133 82 0 chr9 106635688 106635823 -17440349 + B1_Mus1 SINE Alu 3 148 0 2 1398 616 165 87 0 chr9 106635846 106635961 -17440211 + B1_Mus1 SINE Alu 2 126 -22 2 1398 1274 290 30 76 chr9 106635976 106636607 -17439565 + Lx9 LINE L1 6980 7581 -63 2 1398 28 29 0 0 chr9 106636979 106637014 -17439158 + AT_rich Low_complexity Low_complexity 1 35 0 2 1398 589 234 0 62 chr9 106637031 106637177 -17438995 + B1_Mur1 SINE Alu 2 138 -11 2 1398 1687 21 0 5 chr9 106637186 106637378 -17438794 - B2_Mm1a SINE B2 -2 191 1 2 1398 1236 27 0 13 chr9 106637469 106637618 -17438554 - B1_Mus1 SINE Alu -1 147 1 2 1398 368 337 72 5 chr9 106637735 106637929 -17438243 - MER20 DNA MER1_type 0 219 13 2 1398 270 255 157 0 chr9 106638058 106638160 -17438012 + B1F SINE Alu 27 144 -5 2 1398 450 329 13 26 chr9 106638372 106638528 -17437644 + Lx8 LINE L1 7134 7287 -186 2 1398 643 205 8 8 chr9 106638535 106638658 -17437514 + B1_Mur2 SINE Alu 7 129 -20 2 1398 1196 54 0 0 chr9 106639097 106639245 -17436927 + B1_Mus1 SINE Alu 1 148 0 2 1398 180 111 0 0 chr9 106639246 106639273 -17436899 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1398 2875 32 14 9 chr9 106639545 106639889 -17436283 + ORR1A1 LTR MaLR 1 346 0 2 1398 673 213 41 41 chr9 106640199 106640346 -17435826 + B1_Mur3 SINE Alu 3 149 0 2 1398 191 61 30 0 chr9 106640348 106640381 -17435791 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1398 1176 148 151 72 chr9 106640539 106640844 -17435328 + ORR1D1 LTR MaLR 3 331 -43 2 1398 255 302 30 23 chr9 106641086 106641218 -17434954 + B1_Mus1 SINE Alu 16 148 0 2 1398 526 256 23 0 chr9 106641846 106641975 -17434197 + B1_Mur1 SINE Alu 1 132 -17 2 1398 1084 76 7 0 chr9 106641983 106642127 -17434045 - B1_Mus1 SINE Alu -2 146 2 2 1398 182 214 113 14 chr9 106642785 106642856 -17433316 + L2a LINE L2 1810 1887 -1532 2 1398 406 242 0 21 chr9 106642880 106642973 -17433199 + PB1D10 SINE Alu 12 102 -15 3 1398 328 270 0 0 chr9 106643049 106643123 -17433049 + ID4 SINE ID 4 77 -6 3 1398 356 252 83 46 chr9 106643236 106643344 -17432828 + B1F1 SINE Alu 25 136 -13 3 1398 643 201 22 7 chr9 106643359 106643494 -17432678 + B3 SINE B2 1 137 -79 3 1398 2204 124 16 0 chr9 106643661 106643983 -17432189 + ORR1A2 LTR MaLR 1 327 0 3 1398 2541 136 27 22 chr9 106643983 106644434 -17431738 + ORR1A2-int LTR MaLR 1 453 -1510 3 1398 3380 123 10 8 chr9 106644466 106644964 -17431208 + RLTR19 LTR ERVK 1 499 0 3 1398 224 146 41 20 chr9 106645262 106645311 -17430861 + GA-rich Low_complexity Low_complexity 3 52 0 3 1398 785 239 40 5 chr9 106645316 106645518 -17430654 + B3 SINE B2 2 210 -6 3 1398 460 281 137 26 chr9 106645538 106645772 -17430400 + L2a LINE L2 2610 2869 -550 2 1398 1069 126 0 0 chr9 106645978 106646137 -17430035 + B2_Mm2 SINE B2 1 159 -36 3 1398 296 24 24 0 chr9 106646138 106646179 -17429993 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 1398 467 215 140 0 chr9 106646199 106646306 -17429866 + B1F1 SINE Alu 1 122 -27 3 1398 206 380 95 0 chr9 106646336 106646473 -17429699 + L2a LINE L2 3271 3420 -6 2 1398 816 161 7 28 chr9 106646535 106646676 -17429496 - B1_Mur3 SINE Alu -10 139 2 3 1398 287 224 119 0 chr9 106646972 106647039 -17429133 + Lx9 LINE L1 6361 6435 -1209 3 1398 1293 108 21 0 chr9 106647043 106647229 -17428943 + B2_Mm2 SINE B2 1 190 -5 3 1398 1011 150 0 0 chr9 106647229 106647402 -17428770 + G-rich Low_complexity Low_complexity 4 176 0 3 1398 351 0 0 0 chr9 106647402 106647441 -17428731 + (GAGAA)n Simple_repeat Simple_repeat 4 42 0 3 1398 1054 164 68 11 chr9 106647441 106647632 -17428540 + Lx9 LINE L1 6425 6626 -1018 3 1398 1027 93 30 90 chr9 106647633 106647833 -17428339 - B2_Mm2 SINE B2 0 195 8 3 1398 254 216 0 0 chr9 106647839 106647890 -17428282 + Lx9 LINE L1 6665 6715 -929 3 1398 2515 230 31 24 chr9 106647924 106648543 -17427629 + Lx9 LINE L1 6802 7424 -220 3 1398 631 163 50 29 chr9 106648554 106648693 -17427479 + B1_Mus1 SINE Alu 7 148 0 3 1398 385 187 67 10 chr9 106648727 106648900 -17427272 + Lx9 LINE L1 7416 7628 -16 3 1398 206 204 0 39 chr9 106648904 106648955 -17427217 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 3 1398 892 71 142 0 chr9 106648956 106649083 -17427089 - B1_Mus1 SINE Alu -1 147 3 3 1398 22 35 0 0 chr9 106649085 106649114 -17427058 + AT_rich Low_complexity Low_complexity 1 29 0 3 1398 311 330 33 0 chr9 106649148 106649239 -17426933 + B1F SINE Alu 34 127 -22 3 1398 302 321 0 12 chr9 106649205 106649290 -17426882 + B1F1 SINE Alu 65 148 -1 3 1398 299 281 0 68 chr9 106649675 106649763 -17426409 + B1F1 SINE Alu 1 82 -67 3 1398 494 227 117 36 chr9 106649962 106650099 -17426073 - B1_Mur1 SINE Alu 0 149 2 3 1398 291 206 17 121 chr9 106650164 106650280 -17425892 + L1ME2z LINE L1 5841 5944 -500 3 1398 531 335 57 28 chr9 106650280 106650563 -17425609 + B4A SINE B4 2 292 0 3 1398 631 245 120 0 chr9 106650657 106650849 -17425323 - B3 SINE B2 0 216 2 3 1398 351 296 0 34 chr9 106650950 106651069 -17425103 - PB1D7 SINE Alu -1 119 5 3 1398 222 196 0 105 chr9 106651088 106651145 -17425027 - ID4_ SINE ID -3 80 30 3 1398 246 239 113 0 chr9 106651215 106651286 -17424886 - PB1D10 SINE Alu -15 102 24 3 1398 413 231 0 0 chr9 106651480 106651558 -17424614 + RSINE1 SINE B4 2 79 -86 3 1398 595 234 305 17 chr9 106651632 106651951 -17424221 + MTD LTR MaLR 9 419 0 3 1398 246 62 0 0 chr9 106652089 106652121 -17424051 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1398 913 32 8 16 chr9 106652124 106652250 -17423922 - B1_Mus2 SINE Alu 0 147 23 3 1398 239 312 0 13 chr9 106652486 106652564 -17423608 + ID SINE ID 3 79 -145 3 1398 3828 64 36 17 chr9 106652711 106653232 -17422940 + L1_Mus1 LINE L1 6037 6567 0 3 1398 394 289 35 0 chr9 106653287 106653401 -17422771 - PB1D9 SINE Alu 0 120 3 3 1398 1096 58 19 6 chr9 106653538 106653695 -17422477 + B2_Mm2 SINE B2 34 192 -3 3 1398 1135 82 0 0 chr9 106653698 106653844 -17422328 + B1_Mus2 SINE Alu 1 146 -1 3 1398 335 351 0 0 chr9 106653966 106654060 -17422112 - MER2 DNA MER2_type -4 341 248 3 1398 1160 48 21 0 chr9 106654118 106654263 -17421909 + B1_Mus1 SINE Alu 1 148 0 3 1398 249 212 61 0 chr9 106654281 106654347 -17421825 + PB1D10 SINE Alu 43 112 -5 3 1398 390 21 0 0 chr9 106654432 106654479 -17421693 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1398 960 232 80 29 chr9 106654953 106655228 -17420944 + B4A SINE B4 4 292 0 3 1398 468 229 98 8 chr9 106655258 106655390 -17420782 + B1F1 SINE Alu 6 149 0 3 1398 287 278 14 0 chr9 106655390 106655462 -17420710 + ID4 SINE ID 11 83 0 3 1398 326 148 52 19 chr9 106655497 106655579 -17420593 + PB1D7 SINE Alu 56 149 0 3 1398 453 292 30 15 chr9 106656052 106656184 -17419988 + B1F1 SINE Alu 6 139 -10 3 1398 294 115 0 0 chr9 106656309 106656361 -17419811 + (TCC)n Simple_repeat Simple_repeat 1 52 0 3 1398 199 305 196 25 chr9 106656875 106657033 -17419139 - L2a LINE L2 -194 3232 3048 3 1398 189 107 0 0 chr9 106657508 106657536 -17418636 + (TTC)n Simple_repeat Simple_repeat 2 29 0 3 1398 558 248 0 63 chr9 106657537 106657696 -17418476 - ID_B1 SINE B4 0 224 76 3 1398 559 105 9 19 chr9 106657831 106657938 -17418234 + (GGA)n Simple_repeat Simple_repeat 3 108 0 3 1398 413 195 51 34 chr9 106657941 106658058 -17418114 + PB1D9 SINE Alu 2 120 0 3 1398 307 152 51 0 chr9 106658155 106658214 -17417958 + B1_Mur1 SINE Alu 77 138 -11 3 1398 218 32 32 0 chr9 106658236 106658267 -17417905 + (CAG)n Simple_repeat Simple_repeat 1 32 0 3 1398 297 260 133 29 chr9 106658327 106658537 -17417635 + L1MA5 LINE L1 6069 6300 0 3 1398 687 245 65 99 chr9 106658732 106658995 -17417177 + B4 SINE B4 8 261 -31 3 1398 1234 48 0 0 chr9 106659107 106659253 -17416919 + B1_Mus2 SINE Alu 1 146 -1 3 1398 3971 197 125 24 chr9 106659678 106660495 -17415677 + RMER1B Other Other 50 939 -127 3 1398 1318 106 16 0 chr9 106660495 106660683 -17415489 - B2_Mm2 SINE B2 -3 192 2 3 1398 3971 197 125 24 chr9 106660683 106660780 -17415392 + RMER1B Other Other 940 1055 -11 3 1398 1284 130 5 0 chr9 106661143 106661335 -17414837 + B2_Mm2 SINE B2 2 194 -1 3 1398 240 111 0 0 chr9 106661335 106661371 -17414801 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 3 1398 1220 62 0 0 chr9 106661922 106662068 -17414104 - B1_Mus1 SINE Alu -1 147 2 3 1398 1125 121 69 0 chr9 106662099 106662272 -17413900 + B2_Mm2 SINE B2 2 186 -9 3 1398 712 154 43 22 chr9 106662306 106662445 -17413727 + B1_Mm SINE Alu 5 146 -1 3 1398 231 74 18 53 chr9 106662446 106662503 -17413669 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1398 737 53 281 9 chr9 106662552 106662666 -17413506 + B1_Mm SINE Alu 3 147 0 3 1398 844 85 139 0 chr9 106663056 106663185 -17412987 + B1_Mus2 SINE Alu 1 147 0 3 1398 359 243 115 10 chr9 106663347 106663451 -17412721 + B3 SINE B2 97 211 -5 3 1398 790 247 6 0 chr9 106663584 106663754 -17412418 - B3 SINE B2 -42 174 4 3 1398 328 238 38 0 chr9 106663754 106663824 -17412348 - B1_Mus2 SINE Alu -16 131 59 3 1398 633 285 0 0 chr9 106663920 106664057 -17412115 - ID_B1 SINE B4 -1 223 87 3 1398 231 255 224 52 chr9 106664129 106664245 -17411927 - B1F SINE Alu 0 149 14 3 1398 523 241 16 103 chr9 106664524 106664709 -17411463 + B4 SINE B4 1 169 -123 3 1398 1101 198 52 12 chr9 106664744 106664994 -17411178 - MYSERV16_I-int LTR ERVK -569 1757 1498 3 1398 1110 68 7 7 chr9 106664997 106665145 -17411027 + B1_Mus1 SINE Alu 1 148 0 3 1398 195 42 0 0 chr9 106665165 106665189 -17410983 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1398 267 175 35 0 chr9 106665189 106665246 -17410926 - MYSERV16_I-int LTR ERVK -822 1504 1446 3 1398 3120 135 45 0 chr9 106665238 106665772 -17410400 + MYSERV16_I-int LTR ERVK 1769 2326 0 3 1398 2952 90 20 14 chr9 106665772 106666210 -17409962 + BGLII_B LTR ERVK 1 441 0 3 1398 410 169 32 63 chr9 106666211 106666291 -17409881 + B1_Mur3 SINE Alu 57 139 -10 3 1398 342 0 0 0 chr9 106666291 106666329 -17409843 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1398 410 169 32 63 chr9 106666329 106666343 -17409829 + B1_Mur3 SINE Alu 140 148 -1 3 1398 395 301 10 0 chr9 106666379 106666482 -17409690 - PB1D10 SINE Alu -5 112 9 3 1398 722 158 14 36 chr9 106667398 106667536 -17408636 + B1_Mur4 SINE Alu 2 136 -14 3 1398 980 39 0 0 chr9 106667677 106667807 -17408365 + B1_Mus2 SINE Alu 18 147 0 3 1398 412 157 121 22 chr9 106667942 106668033 -17408139 + B1_Mur2 SINE Alu 2 101 -48 3 1398 220 240 196 28 chr9 106667943 106668050 -17408122 + ID_B1 SINE B4 84 208 -16 3 1398 686 277 50 0 chr9 106668288 106668490 -17407682 + ID_B1 SINE B4 13 224 0 3 1398 1402 285 173 42 chr9 106668562 106669233 -17406939 + Lx8 LINE L1 6711 7469 -4 3 1398 728 250 38 33 chr9 106669267 106669478 -17406694 + B4A SINE B4 29 240 -52 3 1398 1426 98 0 5 chr9 106669478 106669673 -17406499 + B2_Mm2 SINE B2 2 195 0 3 1398 267 208 160 40 chr9 106670276 106670351 -17405821 + PB1 SINE Alu 38 121 -6 3 1398 238 311 54 78 chr9 106670368 106670497 -17405675 + ID_B1 SINE B4 22 147 -77 3 1398 261 250 153 0 chr9 106670439 106670511 -17405661 + PB1D10 SINE Alu 9 91 -26 3 1398 500 245 60 53 chr9 106670645 106670796 -17405376 + RSINE1 SINE B4 8 159 -6 3 1398 476 200 11 0 chr9 106671146 106671236 -17404936 + B3 SINE B2 121 211 -5 3 1398 1199 43 0 0 chr9 106671401 106671542 -17404630 - B1_Mus2 SINE Alu -5 142 2 3 1398 1309 87 43 0 chr9 106671990 106672174 -17403998 + B2_Mm2 SINE B2 1 192 -3 3 1398 504 172 156 52 chr9 106672325 106672460 -17403712 - B1_Mur4 SINE Alu -1 149 1 3 1398 201 294 59 0 chr9 106672532 106672600 -17403572 + MIRm SINE MIR 84 155 -121 3 1398 180 158 0 0 chr9 106672611 106672649 -17403523 + CT-rich Low_complexity Low_complexity 1 38 0 4 1398 284 294 30 60 chr9 106672661 106672795 -17403377 - ID_B1 SINE B4 -15 209 80 4 1398 365 231 0 37 chr9 106672826 106672907 -17403265 + ID4 SINE ID 4 81 -2 4 1398 900 256 24 87 chr9 106672979 106673266 -17402906 + B4A SINE B4 18 286 -6 4 1398 1019 122 0 13 chr9 106673663 106673813 -17402359 + B1_Mus1 SINE Alu 1 148 0 4 1398 343 339 62 0 chr9 106673852 106673982 -17402190 + ID_B1 SINE B4 80 217 -7 4 1398 307 89 36 0 chr9 106675175 106675231 -17400941 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1398 396 168 275 18 chr9 106675860 106675969 -17400203 + B3 SINE B2 1 137 -79 4 1398 579 229 19 100 chr9 106676016 106676176 -17399996 + B1_Mur1 SINE Alu 2 149 0 4 1398 551 206 53 0 chr9 106676287 106676418 -17399754 + Lx7 LINE L1 7559 7696 0 4 1398 1193 49 0 0 chr9 106676428 106676572 -17399600 + B1_Mus2 SINE Alu 1 144 -3 4 1398 1228 35 0 0 chr9 106677202 106677343 -17398829 - B1_Mus2 SINE Alu -6 141 1 4 1398 249 120 80 0 chr9 106677353 106677403 -17398769 - Lx7 LINE L1 0 7696 7643 4 1398 440 248 64 0 chr9 106677512 106677621 -17398551 + ID_B1 SINE B4 101 216 -8 4 1398 1148 50 0 0 chr9 106677644 106677783 -17398389 + B1_Mus2 SINE Alu 1 139 -8 4 1398 251 28 28 0 chr9 106677786 106677822 -17398350 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1398 409 262 28 9 chr9 106677827 106677935 -17398237 + PB1D9 SINE Alu 9 118 -2 4 1398 456 277 28 21 chr9 106678072 106678216 -17397956 + B1_Mm SINE Alu 3 147 0 4 1398 295 330 36 9 chr9 106678814 106678924 -17397248 + PB1D7 SINE Alu 8 120 0 4 1398 1186 61 0 0 chr9 106678927 106679075 -17397097 + B1_Mus1 SINE Alu 1 148 0 4 1398 244 241 0 0 chr9 106679482 106679540 -17396632 + A-rich Low_complexity Low_complexity 1 58 0 4 1398 304 339 47 12 chr9 106679777 106679947 -17396225 - MIRb SINE MIR -67 201 26 4 1398 520 246 135 31 chr9 106680452 106680645 -17395527 - B3 SINE B2 -3 213 1 4 1398 1483 164 90 34 chr9 106680779 106681102 -17395070 + RLTR23 LTR ERV1 90 430 0 4 1398 659 365 37 15 chr9 106682030 106682566 -17393606 + MMERGLN-int LTR ERV1 1219 1766 -5790 4 1398 217 333 0 0 chr9 106682624 106682705 -17393467 - B3A SINE B2 -56 142 62 4 1398 385 261 57 0 chr9 106682700 106682788 -17393384 + B3A SINE B2 93 185 -13 4 1398 535 188 12 158 chr9 106682817 106682916 -17393256 + B1_Mur1 SINE Alu 10 95 -54 4 1398 4948 47 15 0 chr9 106682916 106683509 -17392663 + L1_Mus1 LINE L1 5966 6567 0 4 1398 535 188 12 158 chr9 106683509 106683573 -17392599 + B1_Mur1 SINE Alu 96 149 0 4 1398 28 0 0 0 chr9 106683580 106683608 -17392564 + AT_rich Low_complexity Low_complexity 1 28 0 4 1398 634 50 121 0 chr9 106683719 106683818 -17392354 + B1_Mus1 SINE Alu 30 140 -8 4 1398 261 0 0 0 chr9 106683839 106683868 -17392304 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 4 1398 1028 132 0 6 chr9 106683869 106684029 -17392143 + B2_Mm2 SINE B2 1 159 -36 4 1398 186 43 0 0 chr9 106684029 106684052 -17392120 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1398 378 68 0 0 chr9 106684091 106684150 -17392022 + B2_Mm1a SINE B2 127 185 -8 4 1398 258 359 107 0 chr9 106684260 106684363 -17391809 + PB1D7 SINE Alu 4 117 -3 4 1398 649 134 92 0 chr9 106684593 106684712 -17391460 - B1_Mus2 SINE Alu -1 146 17 4 1398 465 234 19 149 chr9 106684775 106684936 -17391236 + B1_Mur1 SINE Alu 9 148 -1 4 1398 920 166 0 0 chr9 106684952 106685091 -17391081 + B1_Mur4 SINE Alu 5 143 -7 4 1398 367 309 19 44 chr9 106685118 106685286 -17390886 + RSINE1 SINE B4 1 159 -6 4 1398 441 0 0 0 chr9 106685665 106685714 -17390458 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1398 377 282 18 9 chr9 106685853 106685964 -17390208 + PB1D10 SINE Alu 1 112 -5 4 1398 261 257 43 0 chr9 106686216 106686286 -17389886 + ID_B1 SINE B4 78 150 -74 4 1398 252 214 18 0 chr9 106686320 106686376 -17389796 + (CATA)n Simple_repeat Simple_repeat 4 60 0 4 1398 971 191 61 10 chr9 106686416 106686612 -17389560 + B3 SINE B2 2 207 -9 4 1398 268 250 16 0 chr9 106686908 106686972 -17389200 + ID4 SINE ID 3 67 -16 4 1398 295 132 19 0 chr9 106687567 106687620 -17388552 + B1_Mus1 SINE Alu 1 54 -94 4 1398 832 171 14 0 chr9 106687746 106687886 -17388286 + B3A SINE B2 2 143 -55 4 1398 450 0 0 0 chr9 106687889 106687939 -17388233 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1398 369 223 47 55 chr9 106688398 106688526 -17387646 + B1F SINE Alu 22 148 -1 4 1398 534 254 9 0 chr9 106688531 106688641 -17387531 + B1_Mur1 SINE Alu 1 111 -38 4 1398 510 220 140 56 chr9 106688669 106688847 -17387325 + B3A SINE B2 3 195 -3 4 1398 926 58 83 0 chr9 106688849 106688970 -17387202 + B1_Mm SINE Alu 2 132 -15 4 1398 549 0 0 0 chr9 106688988 106689049 -17387123 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 4 1398 556 110 0 71 chr9 106689077 106689175 -17386997 - B1_Mur4 SINE Alu 0 150 60 4 1398 1087 47 0 0 chr9 106689179 106689308 -17386864 + B1_Mus1 SINE Alu 5 133 -15 4 1398 1267 73 79 0 chr9 106689395 106689572 -17386600 + B2_Mm2 SINE B2 2 192 -3 4 1398 189 0 0 0 chr9 106689591 106689612 -17386560 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 1398 225 182 0 0 chr9 106691705 106691749 -17384423 + A-rich Low_complexity Low_complexity 2 45 0 4 1398 201 192 26 52 chr9 106692293 106692370 -17383802 + T-rich Low_complexity Low_complexity 2 76 0 4 1398 362 182 30 0 chr9 106692383 106692449 -17383723 - B1_Mus1 SINE Alu -80 68 1 4 1399 1256 41 0 0 chr9 106692785 106692931 -17383241 + B1_Mus1 SINE Alu 1 146 -2 4 1399 366 23 0 0 chr9 106693100 106693143 -17383029 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1399 297 231 24 24 chr9 106693154 106693318 -17382854 + GA-rich Low_complexity Low_complexity 2 165 0 4 1399 429 282 73 47 chr9 106693645 106693948 -17382224 - RMER20A LTR ERVK -406 454 164 4 1399 278 186 0 28 chr9 106694094 106694166 -17382006 + G-rich Low_complexity Low_complexity 5 74 0 4 1399 753 12 0 0 chr9 106694400 106694486 -17381686 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 4 1399 1102 78 106 24 chr9 106694491 106694661 -17381511 - B2_Mm2 SINE B2 -8 187 4 4 1399 556 202 165 57 chr9 106694708 106694902 -17381270 + RMER4B LTR ERVK 33 247 -338 4 1399 306 269 31 96 chr9 106694945 106695175 -17380997 + RMER4B LTR ERVK 392 574 -11 4 1399 353 296 0 61 chr9 106695236 106695351 -17380821 - PB1 SINE Alu -18 109 2 4 1399 257 293 0 24 chr9 106695384 106695395 -17380777 - ID4 SINE ID 0 83 2 4 1399 258 239 14 27 chr9 106695395 106695468 -17380704 - ID SINE ID -151 73 2 4 1399 30 27 0 0 chr9 106695841 106695878 -17380294 + AT_rich Low_complexity Low_complexity 1 37 0 4 1399 396 292 85 0 chr9 106695903 106696033 -17380139 + B1F SINE Alu 1 141 -8 4 1399 1173 241 138 27 chr9 106696060 106696431 -17379741 + MTC LTR MaLR 1 412 -9 4 1399 640 154 40 87 chr9 106696515 106696664 -17379508 - B1_Mm SINE Alu 0 147 6 4 1399 619 172 8 47 chr9 106696713 106696858 -17379314 - B1_Mus2 SINE Alu 0 150 3 4 1399 1206 34 7 7 chr9 106696913 106697059 -17379113 + B1_Mus1 SINE Alu 1 146 -2 4 1399 1694 21 0 0 chr9 106697077 106697265 -17378907 + B2_Mm1a SINE B2 1 188 -5 4 1399 401 308 7 34 chr9 106697330 106697478 -17378694 + ID_B1 SINE B4 79 222 -2 4 1399 423 275 92 0 chr9 106697510 106697641 -17378531 + B1F2 SINE Alu 1 143 -6 4 1399 225 0 0 0 chr9 106697651 106697676 -17378496 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1399 501 88 0 0 chr9 106697676 106697742 -17378430 + B1_Mus2 SINE Alu 1 66 -81 4 1399 1699 125 7 21 chr9 106697742 106698028 -17378144 - RMER6A LTR ERVK -1 755 474 4 1399 2604 152 82 24 chr9 106698030 106698529 -17377643 - RLTR11A LTR ERVK 0 528 1 4 1399 916 41 0 8 chr9 106698538 106698662 -17377510 + B1_Mus1 SINE Alu 25 147 -1 4 1399 195 139 0 0 chr9 106698666 106698702 -17377470 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4 1399 1488 225 57 18 chr9 106698705 106699142 -17377030 - MYSERV16_I-int LTR ERVK -87 2239 1854 4 1399 4157 119 13 47 chr9 106699121 106699529 -17376643 - MurERV4_19-int LTR ERVK -554 5226 4813 4 1399 1341 89 21 10 chr9 106699529 106699721 -17376451 + B2_Mm2 SINE B2 2 195 0 4 1399 4157 119 13 47 chr9 106699721 106700000 -17376172 - MurERV4_19-int LTR ERVK -968 4812 4562 4 1399 1502 41 12 105 chr9 106700003 106700064 -17376108 - ORR1A2 LTR MaLR -8 319 273 4 1399 1174 62 0 0 chr9 106700064 106700210 -17375962 - B1_Mm SINE Alu 0 147 2 4 1399 1502 41 12 105 chr9 106700210 106700395 -17375777 - ORR1A2 LTR MaLR -55 272 96 4 1399 329 94 125 0 chr9 106700392 106700456 -17375716 + B2_Mm2 SINE B2 124 195 0 4 1399 1193 55 7 0 chr9 106700465 106700610 -17375562 + B1_Mus2 SINE Alu 1 146 -1 4 1399 203 54 26 51 chr9 106700613 106700652 -17375520 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1399 255 307 111 42 chr9 106700672 106700768 -17375404 + L1M3 LINE L1 4312 4399 -1481 4 1399 738 202 208 0 chr9 106700768 106700946 -17375226 - B3 SINE B2 0 216 2 4 1399 494 308 113 43 chr9 106700946 106701297 -17374875 + L1M3 LINE L1 4400 4834 -1306 4 1399 456 19 0 0 chr9 106701297 106701350 -17374822 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 4 1399 1192 55 0 0 chr9 106701350 106701495 -17374677 - B1_Mus1 SINE Alu -2 146 2 4 1399 494 310 114 44 chr9 106701495 106701599 -17374573 + L1M3 LINE L1 4835 4937 -1203 4 1399 507 107 0 0 chr9 106701599 106701674 -17374498 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1399 462 36 0 0 chr9 106701674 106701729 -17374443 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1399 1122 82 7 0 chr9 106701772 106701918 -17374254 + B1_Mus2 SINE Alu 1 147 0 5 1399 198 128 0 0 chr9 106701919 106701958 -17374214 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1399 1411 61 33 0 chr9 106701996 106702177 -17373995 + B2_Mm1t SINE B2 2 188 -5 5 1399 5614 235 42 82 chr9 106702760 106702935 -17373237 - MERVK26-int LTR ERVK -149 6770 6644 5 1399 1168 49 14 0 chr9 106702935 106703079 -17373093 - B1_Mm SINE Alu 0 147 2 5 1399 5614 235 42 82 chr9 106703079 106704447 -17371725 - MERVK26-int LTR ERVK -276 6643 5289 5 1399 402 318 0 0 chr9 106704449 106704559 -17371613 - MERVK26-int LTR ERVK -5489 1430 1321 5 1399 184 54 53 26 chr9 106704559 106704597 -17371575 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 5 1399 1121 76 0 20 chr9 106704605 106704752 -17371420 - B1_Mus1 SINE Alu 0 148 5 5 1399 976 51 0 35 chr9 106704990 106705131 -17371041 + B1_Mm SINE Alu 11 146 -1 5 1399 270 194 0 0 chr9 106705212 106705284 -17370888 + (TTAGGG)n Simple_repeat Simple_repeat 6 77 0 5 1399 1088 298 99 18 chr9 106705469 106705975 -17370197 - MERVK26-int LTR ERVK -6030 889 343 5 1399 339 169 107 12 chr9 106705975 106706059 -17370113 - B2_Mm2 SINE B2 -5 190 97 5 1399 276 185 0 0 chr9 106706081 106706135 -17370037 + (CATA)n Simple_repeat Simple_repeat 2 55 0 5 1399 481 280 64 65 chr9 106707522 106707822 -17368350 - RMER20B LTR ERVK -179 463 167 5 1399 468 0 0 0 chr9 106708010 106708062 -17368110 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 5 1399 1077 72 59 0 chr9 106708062 106708215 -17367957 - B2_Mm2 SINE B2 -33 162 1 5 1399 324 222 86 0 chr9 106708270 106708351 -17367821 + ID_B1 SINE B4 136 223 -1 5 1399 502 214 87 51 chr9 106708390 106708528 -17367644 + B1F SINE Alu 1 143 -6 5 1399 438 264 0 0 chr9 106709187 106709278 -17366894 + PB1D10 SINE Alu 3 93 -24 5 1399 356 313 17 0 chr9 106709640 106709755 -17366417 - PB1D10 SINE Alu 0 117 1 5 1399 376 299 21 0 chr9 106710163 106710260 -17365912 + PB1 SINE Alu 1 99 -28 5 1399 2236 220 38 67 chr9 106710320 106710949 -17365223 - RMER19C LTR ERVK 0 611 1 5 1399 815 123 58 7 chr9 106710960 106711099 -17365073 + B1_Mur4 SINE Alu 5 150 0 5 1399 685 198 42 6 chr9 106711104 106711272 -17364900 - RMER19C LTR ERVK -437 174 1 5 1399 979 177 32 0 chr9 106711306 106711492 -17364680 - ORR1D1 LTR MaLR -182 192 1 5 1399 628 71 0 0 chr9 106711839 106711923 -17364249 - B1_Mur4 SINE Alu 0 150 67 5 1399 721 277 115 81 chr9 106711919 106712213 -17363959 - RLTR22_Mur LTR ERVK -189 1659 1326 5 1399 486 0 0 0 chr9 106712213 106712267 -17363905 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1399 721 277 115 81 chr9 106712267 106712467 -17363705 - RLTR22_Mur LTR ERVK -523 1325 1148 5 1399 986 250 86 116 chr9 106712580 106713208 -17362964 - RLTR22_Mur LTR ERVK -1052 796 188 5 1399 1141 118 6 0 chr9 106713208 106713377 -17362795 + B2_Mm1t SINE B2 2 171 -22 5 1399 418 101 360 10 chr9 106713428 106713528 -17362644 + B2_Mm2 SINE B2 47 181 -14 5 1399 757 21 10 0 chr9 106713555 106713652 -17362520 - B1_Mm SINE Alu 0 147 50 5 1399 226 218 54 18 chr9 106713612 106713668 -17362504 - 4.5SRNA scRNA scRNA -8 86 29 5 1399 1152 59 0 0 chr9 106713674 106713810 -17362362 + B1_Mm SINE Alu 1 136 -11 5 1399 634 283 7 7 chr9 106713823 106713976 -17362196 - RMER12 LTR ERVK -1123 199 47 5 1399 599 103 0 0 chr9 106714283 106714370 -17361802 + BC1_Mm scRNA scRNA 1 87 -65 5 1399 258 224 91 13 chr9 106714727 106714804 -17361368 - ID4 SINE ID 0 83 1 5 1399 279 250 47 0 chr9 106714856 106714920 -17361252 - U6 snRNA snRNA -32 75 9 5 1399 471 18 0 0 chr9 106714950 106715006 -17361166 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1399 447 268 44 42 chr9 106715163 106715321 -17360851 - B3A SINE B2 -9 207 48 5 1399 822 173 0 0 chr9 106715343 106715482 -17360690 - B1_Mus2 SINE Alu 0 147 9 5 1399 343 218 32 127 chr9 106715389 106715515 -17360657 - MT2B LTR ERVL -345 256 143 5 1399 366 218 0 60 chr9 106715865 106715948 -17360224 - ID_B1 SINE B4 -65 159 82 5 1399 1014 75 145 0 chr9 106716765 106716924 -17359248 - B2_Mm2 SINE B2 -1 194 13 5 1399 383 209 0 108 chr9 106717777 106717854 -17358318 + ID_B1 SINE B4 103 171 -53 5 1399 623 48 12 0 chr9 106717854 106717937 -17358235 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 5 1399 383 209 0 108 chr9 106717937 106717961 -17358211 + ID_B1 SINE B4 172 193 -31 5 1399 200 249 127 14 chr9 106718157 106718255 -17357917 - MIR SINE MIR -73 189 74 5 1399 1473 198 86 21 chr9 106718273 106718655 -17357517 - MTD LTR MaLR -8 411 5 5 1399 277 245 39 96 chr9 106718836 106718940 -17357232 - B1_Mur2 SINE Alu -5 144 47 5 1399 528 151 123 31 chr9 106718937 106719067 -17357105 - B1_Mur4 SINE Alu 0 150 9 5 1399 248 231 33 143 chr9 106718986 106719077 -17357095 - MT2B LTR ERVL -361 240 160 5 1399 775 68 33 17 chr9 106719115 106719235 -17356937 - B2_Mm2 SINE B2 -4 191 70 5 1399 1455 73 10 16 chr9 106719670 106719864 -17356308 - B2_Mm1t SINE B2 0 193 1 5 1399 808 46 0 0 chr9 106719997 106720106 -17356066 - B1_Mm SINE Alu 0 147 39 5 1399 358 191 66 22 chr9 106720040 106720131 -17356041 - RLTR25B LTR ERVK -519 509 415 5 1399 692 177 287 18 chr9 106720186 106720353 -17355819 - B3 SINE B2 -4 212 1 5 1399 745 106 104 22 chr9 106720402 106720537 -17355635 - B1_Mur4 SINE Alu 0 150 5 5 1399 213 39 0 0 chr9 106720838 106720864 -17355308 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1399 513 266 21 7 chr9 106721061 106721201 -17354971 - ID_B1 SINE B4 -3 221 80 5 1399 569 83 0 12 chr9 106721202 106721287 -17354885 + (TTCTC)n Simple_repeat Simple_repeat 4 87 0 5 1399 1243 40 0 0 chr9 106721291 106721439 -17354733 - B1_Mus1 SINE Alu 0 148 1 5 1399 769 191 0 13 chr9 106721444 106721593 -17354579 - B1_Mus1 SINE Alu 0 148 2 5 1399 560 272 0 7 chr9 106721959 106722107 -17354065 + B1_Mur2 SINE Alu 1 147 -2 5 1399 1048 183 40 0 chr9 106722114 106722316 -17353856 - B3 SINE B2 -6 210 1 5 1399 856 174 0 14 chr9 106722348 106722488 -17353684 - B1_Mus2 SINE Alu -8 139 2 5 1399 1419 77 39 0 chr9 106722596 106722778 -17353394 + B2_Mm2 SINE B2 2 190 -5 5 1399 634 131 0 14 chr9 106723046 106723193 -17352979 + (TTTC)n Simple_repeat Simple_repeat 3 147 0 5 1399 936 93 21 21 chr9 106723222 106723365 -17352807 - B1_Mus1 SINE Alu 0 148 6 5 1399 264 260 62 0 chr9 106723640 106723725 -17352447 + MIR3 SINE MIR 84 166 -42 5 1399 198 118 0 0 chr9 106724298 106724332 -17351840 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1399 28 0 0 0 chr9 106724612 106724640 -17351532 + GC_rich Low_complexity Low_complexity 1 28 0 5 1399 479 238 40 0 chr9 106725274 106725375 -17350797 - B1_Mus1 SINE Alu -43 105 1 5 1399 198 0 0 0 chr9 106725380 106725402 -17350770 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1399 767 147 39 8 chr9 106725569 106725699 -17350473 - B1_Mus2 SINE Alu 0 147 14 5 1399 1281 68 0 0 chr9 106725699 106725847 -17350325 + B1_Mus1 SINE Alu 1 148 0 5 1399 490 90 0 0 chr9 106726021 106726088 -17350084 - B1_Mus1 SINE Alu -80 68 2 5 1399 225 214 0 176 chr9 106726088 106726106 -17350066 - MT2B LTR ERVL -377 224 155 5 1399 240 211 316 44 chr9 106726474 106726588 -17349584 + MIRb SINE MIR 82 230 -38 5 1399 464 176 94 38 chr9 106726691 106726797 -17349375 + B1_Mur1 SINE Alu 33 144 -5 5 1399 3626 52 0 18 chr9 106726897 106727351 -17348821 - L1_Mus1 LINE L1 0 6567 6133 5 1399 1481 62 50 0 chr9 106727365 106727544 -17348628 - B2_Mm2 SINE B2 -7 188 1 5 1399 24 53 0 0 chr9 106727548 106727586 -17348586 + AT_rich Low_complexity Low_complexity 1 38 0 5 1399 588 208 108 0 chr9 106727590 106727710 -17348462 - B1_Mm SINE Alu -6 141 9 5 1399 232 354 98 0 chr9 106727750 106727832 -17348340 - RSINE1 SINE B4 -2 163 74 5 1399 1268 54 0 0 chr9 106727913 106728060 -17348112 + B1_Mus1 SINE Alu 2 148 0 5 1399 602 300 32 27 chr9 106728164 106728349 -17347823 + B3A SINE B2 3 188 -10 5 1399 541 268 55 0 chr9 106728391 106728518 -17347654 - RSINE1 SINE B4 -28 137 4 5 1399 390 191 0 199 chr9 106728659 106728790 -17347382 - MT2B LTR ERVL -316 285 181 5 1399 623 189 0 36 chr9 106728681 106728791 -17347381 - B1_Mus1 SINE Alu -26 122 17 5 1399 215 333 11 138 chr9 106728735 106728829 -17347343 - B4A SINE B4 -140 152 71 5 1399 227 311 0 118 chr9 106728827 106728962 -17347210 + Charlie7 DNA MER1_type 2469 2587 -25 5 1399 217 306 16 31 chr9 106728929 106728993 -17347179 - ID SINE ID -161 63 1 5 1399 29 60 0 0 chr9 106729017 106729067 -17347105 + AT_rich Low_complexity Low_complexity 1 50 0 5 1399 1106 66 66 0 chr9 106729067 106729204 -17346968 + B1_Mus1 SINE Alu 3 148 0 5 1399 1048 149 34 22 chr9 106729214 106729393 -17346779 - B2_Mm2 SINE B2 -14 181 1 5 1399 314 303 101 0 chr9 106729542 106729641 -17346531 + PB1D7 SINE Alu 4 112 -8 5 1399 198 0 0 0 chr9 106729641 106729663 -17346509 + (CAACC)n Simple_repeat Simple_repeat 5 26 0 5 1399 263 289 135 0 chr9 106729695 106729799 -17346373 + B1F SINE Alu 30 147 -2 5 1399 303 219 94 0 chr9 106729862 106729926 -17346246 + ID4_ SINE ID 5 74 -9 5 1399 228 269 0 19 chr9 106729949 106730002 -17346170 + ID4_ SINE ID 6 57 -26 5 1399 200 93 0 44 chr9 106730124 106730137 -17346035 + (T)n Simple_repeat Simple_repeat 1 13 0 5 1399 757 186 13 76 chr9 106730137 106730294 -17345878 - B1_Mm SINE Alu 0 147 1 5 1399 357 218 64 120 chr9 106730294 106730418 -17345754 - PB1D9 SINE Alu -2 118 1 6 1399 200 93 0 44 chr9 106730418 106730448 -17345724 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1399 1328 111 15 41 chr9 106730477 106730674 -17345498 + B2_Mm2 SINE B2 3 194 -1 6 1399 710 266 129 6 chr9 106730699 106730877 -17345295 + ID_B1 SINE B4 23 222 -2 6 1399 245 231 19 0 chr9 106730892 106730944 -17345228 + B1F1 SINE Alu 85 137 -12 6 1399 282 186 51 0 chr9 106730968 106731027 -17345145 - L1MB5 LINE L1 -54 6120 6059 6 1399 854 150 48 41 chr9 106731053 106731199 -17344973 - B1_Mus1 SINE Alu 0 148 2 6 1399 295 260 0 72 chr9 106731204 106731287 -17344885 - B1_Mur4 SINE Alu 0 147 71 6 1399 522 253 76 4 chr9 106731596 106731715 -17344457 + B3A SINE B2 1 124 -71 6 1399 441 0 0 0 chr9 106731735 106731784 -17344388 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1399 641 148 155 8 chr9 106731876 106732005 -17344167 - B1_Mus1 SINE Alu 0 148 1 6 1399 180 97 0 0 chr9 106732008 106732039 -17344133 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1399 904 259 5 29 chr9 106732039 106732246 -17343926 + B4 SINE B4 85 286 -6 6 1399 280 196 18 1 chr9 106732324 106732425 -17343747 + L1ME2 LINE L1 5880 5990 -172 6 1399 275 386 47 16 chr9 106732434 106732671 -17343501 - L2b LINE L2 -285 3090 2848 6 1399 520 303 0 21 chr9 106732986 106733131 -17343041 - B1F1 SINE Alu -5 144 3 6 1399 1401 95 5 21 chr9 106733298 106733492 -17342680 - B2_Mm1t SINE B2 -2 191 1 6 1399 398 284 110 0 chr9 106733500 106733609 -17342563 - PB1 SINE Alu -2 125 5 6 1399 479 294 54 23 chr9 106733648 106733777 -17342395 + RSINE1 SINE B4 12 144 -21 6 1399 907 84 23 0 chr9 106733785 106733916 -17342256 + B2_Mm2 SINE B2 59 192 -3 6 1399 551 195 8 110 chr9 106733980 106734107 -17342065 + PB1D9 SINE Alu 2 115 -5 6 1399 201 74 0 0 chr9 106734159 106734186 -17341986 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 1399 1417 87 11 0 chr9 106734186 106734370 -17341802 - B2_Mm1a SINE B2 -7 186 1 6 1399 621 167 7 143 chr9 106734587 106734694 -17341478 - B1_Mus1 SINE Alu -11 137 41 6 1399 1437 89 5 20 chr9 106734694 106734889 -17341283 - B2_Mm1t SINE B2 0 193 2 6 1399 621 167 7 143 chr9 106734889 106734935 -17341237 - B1_Mus1 SINE Alu -108 40 5 6 1399 505 223 28 28 chr9 106735009 106735115 -17341057 - B3A SINE B2 -90 108 3 6 1399 1062 112 73 40 chr9 106735261 106735286 -17340886 - B2_Mm2 SINE B2 -11 184 162 6 1399 207 0 0 0 chr9 106735286 106735309 -17340863 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1399 1062 112 73 40 chr9 106735309 106735460 -17340712 - B2_Mm2 SINE B2 -34 161 2 6 1399 695 65 97 53 chr9 106735616 106735730 -17340442 + B1_Mm SINE Alu 29 147 0 6 1399 636 189 93 7 chr9 106735843 106735982 -17340190 + RMER12 LTR ERVK 1070 1220 -102 6 1399 765 201 28 7 chr9 106736165 106736310 -17339862 - B1_Mur1 SINE Alu 0 149 2 6 1399 451 189 0 133 chr9 106736199 106736327 -17339845 - MT2B LTR ERVL -338 263 153 6 1399 22 0 0 0 chr9 106736660 106736682 -17339490 + AT_rich Low_complexity Low_complexity 1 22 0 6 1399 1519 62 5 54 chr9 106736712 106736915 -17339257 - B2_Mm1a SINE B2 0 193 1 6 1399 1243 48 7 0 chr9 106737091 106737237 -17338935 - B1_Mm SINE Alu 0 147 1 6 1399 309 244 82 72 chr9 106737479 106737576 -17338596 + PB1D10 SINE Alu 9 106 -11 6 1399 186 191 0 0 chr9 106737800 106737842 -17338330 + T-rich Low_complexity Low_complexity 3 44 0 6 1399 243 273 83 83 chr9 106738110 106738218 -17337954 + PB1D10 SINE Alu 4 111 -6 6 1399 2535 103 23 3 chr9 106738223 106738574 -17337598 - RLTR15 LTR ERVK -1 358 1 6 1399 367 182 130 0 chr9 106738646 106738723 -17337449 - PB1D9 SINE Alu -1 119 33 6 1399 231 36 0 0 chr9 106739038 106739066 -17337106 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1399 1257 48 7 0 chr9 106739069 106739214 -17336958 - B1_Mus2 SINE Alu 0 147 2 6 1399 252 197 0 47 chr9 106739304 106739368 -17336804 - L1ME2z LINE L1 -1 6443 6383 6 1399 889 153 20 53 chr9 106739556 106739708 -17336464 - B1_Mur3 SINE Alu 0 149 3 6 1399 338 326 70 0 chr9 106739801 106739930 -17336242 - B1F SINE Alu -7 142 5 6 1399 239 271 0 20 chr9 106740390 106740439 -17335733 + B1F2 SINE Alu 10 57 -92 6 1399 264 268 52 59 chr9 106741520 106741599 -17334573 + MER3 DNA MER1_type 54 131 -78 6 1399 531 260 13 33 chr9 106741599 106741750 -17334422 - B1F SINE Alu -1 148 1 6 1399 264 268 52 59 chr9 106741750 106741805 -17334367 + MER3 DNA MER1_type 132 187 -22 6 1399 180 0 0 0 chr9 106742010 106742030 -17334142 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1399 300 53 0 0 chr9 106742251 106742289 -17333883 + (TGG)n Simple_repeat Simple_repeat 1 38 0 6 1399 878 122 7 30 chr9 106742289 106742424 -17333748 + B1_Mur4 SINE Alu 19 150 0 6 1399 231 319 73 147 chr9 106742441 106742577 -17333595 + B3A SINE B2 56 181 -17 6 1399 227 110 9 0 chr9 106742627 106742661 -17333511 + B1_Mur4 SINE Alu 1 37 -113 6 1399 197 65 0 31 chr9 106742717 106742749 -17333423 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 1399 264 304 48 81 chr9 106742772 106742845 -17333327 + MT2B2 LTR ERVL 95 161 -423 6 1399 594 241 11 1 chr9 106742845 106742970 -17333202 + B1_Mur2 SINE Alu 3 128 -21 6 1399 189 0 0 0 chr9 106743068 106743089 -17333083 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 6 1399 922 116 43 0 chr9 106743110 106743248 -17332924 - B2_Mm2 SINE B2 -50 145 2 6 1399 249 254 14 43 chr9 106743703 106743773 -17332399 + B4 SINE B4 80 147 -145 6 1399 613 279 64 7 chr9 106743787 106743928 -17332244 + RSINE1 SINE B4 3 151 -14 6 1399 1258 38 131 6 chr9 106744032 106744192 -17331980 - B2_Mm2 SINE B2 -14 181 2 6 1399 22 0 0 0 chr9 106744296 106744318 -17331854 + AT_rich Low_complexity Low_complexity 1 22 0 6 1399 1596 68 5 0 chr9 106744349 106744539 -17331633 - B2_Mm1t SINE B2 -2 191 1 6 1399 2717 184 52 18 chr9 106744906 106745464 -17330708 - RLTR20B3 LTR ERVK 0 577 1 6 1399 235 290 40 79 chr9 106745464 106745516 -17330656 - MTEb LTR MaLR -60 319 273 6 1399 233 75 25 0 chr9 106745516 106745556 -17330616 + (CAAGG)n Simple_repeat Simple_repeat 3 43 0 6 1399 235 290 40 79 chr9 106745556 106745591 -17330581 - MTEb LTR MaLR -107 272 237 6 1399 1420 109 5 5 chr9 106745745 106745938 -17330234 - B2_Mm2 SINE B2 -2 193 1 6 1399 216 203 117 17 chr9 106745976 106746036 -17330136 + ID4_ SINE ID 4 69 -14 6 1399 1227 76 0 0 chr9 106746191 106746336 -17329836 - B1_Mus2 SINE Alu 0 147 3 6 1399 559 183 25 34 chr9 106747216 106747335 -17328837 - B1_Mus1 SINE Alu -29 119 2 6 1399 1282 73 0 0 chr9 106747497 106747661 -17328511 - B2_Mm2 SINE B2 -30 165 2 6 1399 802 226 0 14 chr9 106747930 106748078 -17328094 - B1_Mm SINE Alu 0 147 2 6 1399 1336 34 0 0 chr9 106748102 106748249 -17327923 - B1_Mm SINE Alu 0 147 1 6 1399 794 221 21 0 chr9 106748276 106748421 -17327751 + B1_Mur1 SINE Alu 2 149 0 6 1399 423 194 0 58 chr9 106748503 106748745 -17327427 + (TA)n Simple_repeat Simple_repeat 1 228 0 6 1399 29 0 0 0 chr9 106748956 106748985 -17327187 + AT_rich Low_complexity Low_complexity 1 29 0 6 1399 338 275 136 8 chr9 106749263 106749283 -17326889 - B1F SINE Alu 0 149 52 6 1399 432 250 106 0 chr9 106749283 106749387 -17326785 - ID_B1 SINE B4 -20 204 90 6 1399 279 227 104 15 chr9 106749492 106749559 -17326613 - ID4_ SINE ID -9 74 2 6 1399 373 305 93 0 chr9 106749802 106749920 -17326252 - B1F SINE Alu -7 142 14 6 1399 747 159 158 7 chr9 106750383 106750535 -17325637 - MTC LTR MaLR -20 401 227 6 1399 3064 176 19 10 chr9 106750535 106751057 -17325115 - MERVL_2A-int LTR ERVL -3903 1858 1332 6 1399 2724 140 29 16 chr9 106751054 106751505 -17324667 - MERVL_2A-int LTR ERVL -5046 715 259 6 1399 180 111 0 0 chr9 106751509 106751536 -17324636 + (TCCCG)n Simple_repeat Simple_repeat 5 31 0 6 1399 180 0 0 0 chr9 106751541 106751561 -17324611 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1399 610 177 63 16 chr9 106751568 106751694 -17324478 - B1_Mus2 SINE Alu -12 135 4 6 1399 1265 128 106 79 chr9 106751698 106751952 -17324220 - MERVL_2A-int LTR ERVL -5500 261 1 6 1399 1137 256 72 91 chr9 106751954 106752151 -17324021 - MT2A LTR ERVL -5 528 335 6 1399 6145 32 7 0 chr9 106752151 106752836 -17323336 + L1Md_F2 LINE L1 5893 6582 0 6 1399 1137 256 72 91 chr9 106752836 106753176 -17322996 - MT2A LTR ERVL -199 334 2 6 1399 509 204 35 1 chr9 106753176 106753274 -17322898 - B1_Mur2 SINE Alu -16 104 5 6 1399 391 281 218 35 chr9 106753274 106753286 -17322886 - ID_B1 SINE B4 -15 209 70 6 1399 282 95 0 0 chr9 106753286 106753328 -17322844 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1399 391 281 218 35 chr9 106753328 106753386 -17322786 - ID SINE ID -155 69 9 6 1399 1247 84 0 6 chr9 106753709 106753888 -17322284 + (TTC)n Simple_repeat Simple_repeat 3 180 0 6 1399 303 69 0 77 chr9 106753888 106753966 -17322206 + (TCC)n Simple_repeat Simple_repeat 3 74 0 6 1399 300 212 73 24 chr9 106753982 106754064 -17322108 + RLTR25B LTR ERVK 424 509 -519 6 1399 838 56 0 0 chr9 106754000 106754107 -17322065 + B1_Mus2 SINE Alu 41 147 0 6 1399 611 256 56 30 chr9 106754590 106754787 -17321385 - B3 SINE B2 -1 215 14 6 1399 988 225 74 10 chr9 106754895 106755097 -17321075 - B3 SINE B2 0 216 2 6 1399 301 344 90 22 chr9 106755107 106755241 -17320931 - B1F SINE Alu -6 143 1 6 1399 769 171 70 0 chr9 106755793 106755922 -17320250 - B1_Mur4 SINE Alu -12 138 1 6 1399 202 229 0 0 chr9 106755934 106755982 -17320190 + A-rich Low_complexity Low_complexity 1 48 0 6 1399 532 270 32 0 chr9 106755991 106756117 -17320055 + RSINE1 SINE B4 3 132 -33 6 1399 865 154 6 51 chr9 106756177 106756334 -17319838 - B1_Mur4 SINE Alu 0 150 1 6 1399 22 35 0 0 chr9 106756424 106756453 -17319719 + AT_rich Low_complexity Low_complexity 1 29 0 7 1399 469 300 126 72 chr9 106756682 106756770 -17319402 - B4 SINE B4 -5 287 201 7 1399 1201 62 14 0 chr9 106756770 106756915 -17319257 + B1_Mus1 SINE Alu 2 148 0 7 1399 469 300 126 72 chr9 106756915 106757088 -17319084 - B4 SINE B4 -92 200 12 7 1399 1393 102 16 11 chr9 106757146 106757334 -17318838 - B2_Mm2 SINE B2 -5 190 2 7 1399 606 208 109 20 chr9 106757378 106757525 -17318647 + URR1A DNA MER1_type 1 160 -66 7 1399 243 0 0 0 chr9 106758201 106758228 -17317944 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 7 1399 490 252 157 0 chr9 106758241 106758356 -17317816 - ID_B1 SINE B4 -10 214 82 7 1399 219 69 0 0 chr9 106758374 106758403 -17317769 + (TCTCCC)n Simple_repeat Simple_repeat 1 29 0 7 1399 928 118 96 0 chr9 106758493 106758629 -17317543 - B1_Mur4 SINE Alu 0 150 2 7 1399 320 296 27 88 chr9 106758774 106758927 -17317245 - RSINE1 SINE B4 -148 144 2 7 1399 1343 86 42 21 chr9 106759085 106759276 -17316896 - B2_Mm2 SINE B2 0 195 1 7 1399 909 186 7 0 chr9 106759306 106759451 -17316721 + B1_Mus2 SINE Alu 2 147 0 7 1399 429 311 25 0 chr9 106759545 106759667 -17316505 - B1F SINE Alu -7 142 18 7 1399 348 279 167 14 chr9 106759781 106759919 -17316253 - RSINE1 SINE B4 -6 159 1 7 1399 514 265 74 6 chr9 106759933 106760096 -17316076 - L1MA4 LINE L1 -462 5838 5665 7 1399 251 270 132 57 chr9 106762302 106762408 -17313764 + B1_Mur4 SINE Alu 37 150 0 7 1399 414 254 61 35 chr9 106763956 106764070 -17312102 - PB1D10 SINE Alu 0 117 1 7 1399 529 95 0 0 chr9 106764218 106764292 -17311880 - RLTR31_Mm LTR ERVK -487 74 1 7 1399 319 308 170 46 chr9 106764366 106764890 -17311282 - L1MC4 LINE L1 0 8042 7454 7 1399 994 192 61 47 chr9 106766302 106766515 -17309657 - B3 SINE B2 0 216 1 7 1399 822 234 58 32 chr9 106767079 106767269 -17308903 - B3A SINE B2 -2 196 2 7 1399 29 0 0 0 chr9 106768222 106768251 -17307921 + AT_rich Low_complexity Low_complexity 1 29 0 7 1399 235 328 23 101 chr9 106768295 106768424 -17307748 + PB1D7 SINE Alu 1 119 -1 7 1399 638 301 0 40 chr9 106768574 106768726 -17307446 + RSINE1 SINE B4 3 148 -17 7 1399 217 138 0 0 chr9 106769790 106769819 -17306353 - ID4_ SINE ID -40 43 15 7 1399 22 0 0 0 chr9 106770592 106770614 -17305558 + AT_rich Low_complexity Low_complexity 1 22 0 7 1399 601 318 46 0 chr9 106771062 106771213 -17304959 + RSINE1 SINE B4 3 160 -5 7 1399 198 0 0 0 chr9 106772106 106772128 -17304044 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 7 1399 390 293 25 81 chr9 106772688 106772708 -17303464 + ID SINE ID 69 79 -145 7 1399 703 241 28 0 chr9 106772708 106772853 -17303319 + B1_Mur2 SINE Alu 1 149 0 7 1399 291 140 0 0 chr9 106773071 106773121 -17303051 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1399 762 86 9 6 chr9 106773121 106773251 -17302921 - B1_Mm SINE Alu 0 149 18 7 1399 1239 41 0 13 chr9 106773261 106773400 -17302772 + B1_Mus1 SINE Alu 2 139 -9 7 1399 180 0 0 0 chr9 106773400 106773420 -17302752 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1399 1281 21 14 0 chr9 106773684 106773828 -17302344 + B1_Mm SINE Alu 2 147 0 7 1399 21 0 0 0 chr9 106773828 106773849 -17302323 + AT_rich Low_complexity Low_complexity 1 21 0 7 1399 1201 48 0 20 chr9 106773884 106774032 -17302140 + B1_Mus1 SINE Alu 2 146 -2 7 1399 209 196 0 0 chr9 106774033 106774084 -17302088 + A-rich Low_complexity Low_complexity 4 54 0 7 1399 189 0 0 0 chr9 106774589 106774610 -17301562 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1399 395 287 117 78 chr9 106775128 106775385 -17300787 + B4A SINE B4 8 274 -18 7 1399 846 0 0 0 chr9 106775655 106775749 -17300423 + (CCTG)n Simple_repeat Simple_repeat 2 95 0 7 1399 765 0 0 0 chr9 106775750 106775835 -17300337 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 7 1399 210 91 0 0 chr9 106776410 106776443 -17299729 + (ATG)n Simple_repeat Simple_repeat 2 34 0 7 1399 392 349 46 0 chr9 106776845 106777020 -17299152 - MER58A DNA MER1_type -4 220 38 7 1399 180 0 0 0 chr9 106777512 106777532 -17298640 + (TA)n Simple_repeat Simple_repeat 1 20 0 7 1399 23 0 0 0 chr9 106777602 106777625 -17298547 + AT_rich Low_complexity Low_complexity 1 23 0 7 1399 499 225 43 43 chr9 106779282 106779398 -17296774 - B1F1 SINE Alu -33 116 1 7 1399 252 0 0 0 chr9 106780240 106780268 -17295904 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1399 22 0 0 0 chr9 106780725 106780747 -17295425 + AT_rich Low_complexity Low_complexity 1 22 0 7 1399 802 206 46 29 chr9 106780747 106780922 -17295250 + B3 SINE B2 1 178 -38 7 1399 414 0 0 0 chr9 106780923 106780969 -17295203 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1399 247 227 32 28 chr9 106781799 106781885 -17294287 - B1F SINE Alu 0 149 36 7 1399 738 0 0 0 chr9 106782515 106782597 -17293575 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1399 28 29 0 0 chr9 106782940 106782975 -17293197 + AT_rich Low_complexity Low_complexity 1 35 0 7 1399 22 35 0 0 chr9 106783268 106783297 -17292875 + AT_rich Low_complexity Low_complexity 1 29 0 7 1399 998 118 203 0 chr9 106784908 106785095 -17291077 - URR1A DNA MER1_type -1 225 1 7 1399 29 0 0 0 chr9 106786370 106786399 -17289773 + AT_rich Low_complexity Low_complexity 1 29 0 7 1399 23 68 0 0 chr9 106788459 106788503 -17287669 + GC_rich Low_complexity Low_complexity 1 44 0 7 1399 24 67 0 0 chr9 106788568 106788613 -17287559 + GC_rich Low_complexity Low_complexity 1 45 0 7 1399 29 0 0 0 chr9 106788931 106788960 -17287212 + GC_rich Low_complexity Low_complexity 1 29 0 7 1399 26 0 0 0 chr9 106789308 106789334 -17286838 + GC_rich Low_complexity Low_complexity 1 26 0 7 1399 223 232 29 39 chr9 106789343 106789446 -17286726 + (CGG)n Simple_repeat Simple_repeat 3 104 0 7 1399 202 172 35 0 chr9 106789405 106789463 -17286709 + (CGCGG)n Simple_repeat Simple_repeat 4 63 0 7 1399 21 0 0 0 chr9 106791099 106791120 -17285052 + AT_rich Low_complexity Low_complexity 1 21 0 7 1399 216 276 95 73 chr9 106792140 106792277 -17283895 + L2 LINE L2 2821 2960 -459 7 1399 477 239 217 0 chr9 106792681 106792819 -17283353 - B3A SINE B2 -30 168 1 7 1399 25 0 0 0 chr9 106796671 106796696 -17279476 + AT_rich Low_complexity Low_complexity 1 25 0 7 1399 360 286 114 25 chr9 106798545 106798703 -17277469 + Charlie22a DNA MER1_type 27 198 -293 7 1399 1257 54 0 0 chr9 106800478 106800625 -17275547 - B1_Mus1 SINE Alu 0 148 2 7 1399 820 174 20 14 chr9 106804882 106805028 -17271144 - B1_Mus1 SINE Alu -1 147 1 7 1399 480 79 0 0 chr9 106806572 106806635 -17269537 + B2_Mm1t SINE B2 38 100 -93 7 1399 864 99 0 0 chr9 106807158 106807309 -17268863 + (GA)n Simple_repeat Simple_repeat 2 152 0 7 1399 1400 90 5 0 chr9 106807455 106807643 -17268529 + B2_Mm1t SINE B2 1 189 -4 7 1399 691 207 28 14 chr9 106808099 106808241 -17267931 + B1_Mur1 SINE Alu 4 147 -2 7 1399 1472 70 16 0 chr9 106808630 106808815 -17267357 + B2_Mm2 SINE B2 3 190 -5 7 1399 1540 54 5 0 chr9 106810410 106810596 -17265576 + B2_Mm1a SINE B2 1 187 -6 7 1399 245 183 42 0 chr9 106812205 106812276 -17263896 + (TA)n Simple_repeat Simple_repeat 1 74 0 7 1399 2241 154 12 19 chr9 106812312 106812722 -17263450 + RLTR31_Mur LTR ERVK 12 418 -135 7 1399 201 274 0 0 chr9 106813152 106813203 -17262969 + GA-rich Low_complexity Low_complexity 3 53 0 7 1399 786 104 0 0 chr9 106814830 106814936 -17261236 + B1_Mus1 SINE Alu 2 107 -41 7 1399 230 325 0 57 chr9 106815980 106816068 -17260104 - ID4 SINE ID 0 83 1 7 1399 411 237 32 48 chr9 106816068 106816192 -17259980 - PB1 SINE Alu -3 124 3 7 1399 232 274 92 99 chr9 106817370 106817512 -17258660 + B1F SINE Alu 6 146 -3 7 1399 678 286 10 41 chr9 106817388 106817585 -17258587 + B4A SINE B4 102 292 0 7 1399 1089 112 0 0 chr9 106817943 106818086 -17258086 - B1_Mur3 SINE Alu -6 143 1 7 1399 690 226 155 5 chr9 106818086 106818273 -17257899 - MER2 DNA MER2_type -130 215 1 7 1399 287 258 29 58 chr9 106819068 106819171 -17257001 + RLTR19C LTR ERVK 19 118 -388 7 1399 291 294 48 121 chr9 106819236 106819360 -17256812 + RLTR33 LTR ERVK 469 583 -95 7 1399 1634 37 0 5 chr9 106819389 106819580 -17256592 - B2_Mm1t SINE B2 -3 190 1 7 1399 227 302 76 53 chr9 106819869 106820040 -17256132 + YREP_Mm Unknown Unknown 119 293 -1519 7 1399 701 257 21 0 chr9 106819923 106820063 -17256109 - ID_B1 SINE B4 0 224 82 7 1399 355 336 19 0 chr9 106820110 106820217 -17255955 - ID_B1 SINE B4 -29 195 87 7 1399 368 301 21 0 chr9 106820129 106820222 -17255950 - PB1D10 SINE Alu -22 95 1 7 174 35209 42 9 0 chr9 106820770 106826074 -17250098 + L1Md_T LINE L1 296 5586 -297 7 1400 8533 31 7 1 chr9 106826074 106827064 -17249108 + L1Md_T LINE L1 5587 6582 0 7 1400 4887 35 5 0 chr9 106828230 106828801 -17247371 + L1Md_F2 LINE L1 6009 6582 0 7 1400 809 210 126 15 chr9 106828894 106829092 -17247080 + ID_B1 SINE B4 4 223 -1 7 1400 1616 190 84 6 chr9 106829093 106829437 -17246735 + Lx5 LINE L1 6680 7050 0 7 1400 212 130 0 42 chr9 106829447 106829495 -17246677 + A-rich Low_complexity Low_complexity 2 47 0 7 1400 457 250 44 9 chr9 106829667 106829780 -17246392 - PB1D10 SINE Alu 0 117 1 7 1400 261 0 0 0 chr9 106829820 106829849 -17246323 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1400 8616 80 47 9 chr9 106830511 106831956 -17244216 + Lx3C LINE L1 5457 6969 -7 8 1400 1056 115 55 0 chr9 106831969 106832134 -17244038 + MTB_Mm LTR MaLR 178 351 -56 8 1400 369 0 0 0 chr9 106832275 106832316 -17243856 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1400 961 59 0 0 chr9 106832671 106832789 -17243383 + B1_Mus2 SINE Alu 3 120 -27 8 1400 2503 54 0 0 chr9 106832968 106833265 -17242907 - L1Md_F2 LINE L1 -9 6573 6277 8 1400 1724 42 0 0 chr9 106833796 106833988 -17242184 + B2_Mm1a SINE B2 1 192 -1 8 1400 219 324 108 0 chr9 106835012 106835086 -17241086 - ID SINE ID -142 82 1 8 1400 4664 250 55 23 chr9 106835696 106836265 -17239907 + Lx7 LINE L1 6141 6739 -957 8 1400 1050 78 5 38 chr9 106836265 106836451 -17239721 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 8 1400 4664 250 55 23 chr9 106836451 106837042 -17239130 + Lx7 LINE L1 6740 7338 -358 8 1400 183 132 0 70 chr9 106837077 106837134 -17239038 + GA-rich Low_complexity Low_complexity 3 55 0 8 1400 24 53 0 0 chr9 106837210 106837248 -17238924 + AT_rich Low_complexity Low_complexity 1 38 0 8 1400 821 212 98 21 chr9 106838141 106838334 -17237838 - B3 SINE B2 -6 210 3 8 1400 462 228 0 52 chr9 106838458 106838539 -17237633 - B3 SINE B2 -124 92 12 8 1400 3593 23 15 0 chr9 106838539 106838929 -17237243 - MTA_Mm LTR MaLR 0 396 1 8 1400 462 228 0 52 chr9 106838929 106838944 -17237228 - B3 SINE B2 -205 11 1 8 1400 486 196 110 20 chr9 106838960 106839106 -17237066 - Lx5 LINE L1 0 7050 6892 8 1400 321 289 13 13 chr9 106839116 106839193 -17236979 - PB1D10 SINE Alu -6 111 35 8 1400 1279 48 7 0 chr9 106839794 106839940 -17236232 - B1_Mus2 SINE Alu 0 147 1 8 1400 38 61 0 0 chr9 106840978 106841044 -17235128 + AT_rich Low_complexity Low_complexity 1 66 0 8 1400 1078 89 117 18 chr9 106841754 106841925 -17234247 + B2_Mm2 SINE B2 1 188 -7 8 1400 315 0 0 0 chr9 106842626 106842661 -17233511 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 8 1400 503 281 0 0 chr9 106843024 106843138 -17233034 - PB1D10 SINE Alu 0 117 4 8 1400 761 216 22 0 chr9 106843173 106843312 -17232860 - B1_Mur1 SINE Alu -6 143 2 8 1400 717 243 143 0 chr9 106843328 106843517 -17232655 - B3 SINE B2 0 216 1 8 1400 219 139 0 0 chr9 106843926 106843962 -17232210 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1400 875 110 17 0 chr9 106843962 106844080 -17232092 - PB1D9 SINE Alu 0 120 1 8 1400 28 29 0 0 chr9 106845422 106845457 -17230715 + AT_rich Low_complexity Low_complexity 1 35 0 8 1400 23 78 0 0 chr9 106845466 106845517 -17230655 + AT_rich Low_complexity Low_complexity 1 51 0 8 1400 2330 218 171 47 chr9 106846499 106846715 -17229457 + Lx6 LINE L1 6685 6901 -559 8 1400 1655 164 82 33 chr9 106846715 106847106 -17229066 + RMER17C LTR ERVK 1 410 0 8 1400 2330 218 171 47 chr9 106847106 106847577 -17228595 + Lx6 LINE L1 6902 7457 -3 8 1400 286 237 91 13 chr9 106847847 106847924 -17228248 - Lx8 LINE L1 -139 7334 7252 8 1400 628 216 59 7 chr9 106847933 106848068 -17228104 - B1_Mus1 SINE Alu 0 148 7 8 1400 482 300 173 14 chr9 106848107 106848327 -17227845 - Lx8 LINE L1 -242 7231 6977 8 1400 872 90 18 23 chr9 106848330 106848501 -17227671 + (TTCTC)n Simple_repeat Simple_repeat 5 174 0 8 1400 204 40 0 0 chr9 106848501 106848526 -17227646 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1400 446 311 16 32 chr9 106848559 106848682 -17227490 - RSINE1 SINE B4 -28 137 17 8 1400 387 312 103 29 chr9 106849267 106849442 -17226730 + MER5A DNA MER1_type 2 189 0 8 1400 5029 102 9 33 chr9 106849446 106850228 -17225944 + Lx2 LINE L1 5973 6735 -262 8 1400 8003 123 99 2 chr9 106850229 106852485 -17223687 + L1_Mus4 LINE L1 4074 6607 -29 8 1400 1546 119 119 0 chr9 106852485 106852736 -17223436 + Lx2 LINE L1 6709 6989 -8 8 1400 1480 244 69 72 chr9 106853217 106853356 -17222816 + MTD LTR MaLR 2 130 -289 8 1400 1138 116 0 0 chr9 106853356 106853502 -17222670 + B1_Mus2 SINE Alu 2 147 0 8 1400 1480 244 69 72 chr9 106853502 106853781 -17222391 + MTD LTR MaLR 131 419 0 8 1400 238 176 0 38 chr9 106853836 106853889 -17222283 - L1MA7 LINE L1 -136 6155 6105 8 1400 454 272 154 64 chr9 106853890 106854110 -17222062 + MTE2a LTR MaLR 1 240 -139 8 1400 214 158 0 26 chr9 106854342 106854381 -17221791 - PB1 SINE Alu -3 124 87 8 1400 499 283 38 0 chr9 106854350 106854456 -17221716 - B1F SINE Alu -11 138 29 8 1400 229 273 0 94 chr9 106854891 106854976 -17221196 + ID2 SINE ID 4 80 -3 8 1400 35 24 0 0 chr9 106855075 106855117 -17221055 + AT_rich Low_complexity Low_complexity 1 42 0 8 1400 937 232 14 24 chr9 106855126 106855338 -17220834 - B3 SINE B2 -5 211 2 8 1400 989 171 193 0 chr9 106855835 106856016 -17220156 - B3 SINE B2 0 216 1 8 1400 861 258 70 15 chr9 106856678 106856879 -17219293 - B3 SINE B2 -4 212 1 8 1400 1680 233 46 104 chr9 106859116 106859427 -17216745 + Lx6 LINE L1 6973 7273 -187 8 1400 1351 7 0 7 chr9 106859427 106859574 -17216598 - B1_Mus2 SINE Alu -1 146 1 8 1400 1680 233 46 104 chr9 106859574 106859780 -17216392 + Lx6 LINE L1 7274 7460 0 8 1400 932 232 72 45 chr9 106861023 106861340 -17214832 + MTD LTR MaLR 1 405 -14 8 1400 1504 276 76 73 chr9 106861488 106862156 -17214016 + L1M4 LINE L1 278 965 -5577 8 1400 686 147 128 30 chr9 106862156 106862289 -17213883 + B1_Mm SINE Alu 1 146 -1 8 1400 1504 276 76 73 chr9 106862289 106862453 -17213719 + L1M4 LINE L1 966 1112 -5430 8 1400 461 315 30 19 chr9 106862426 106862688 -17213484 + L1_Mur3 LINE L1 1481 1745 -4135 8 1400 719 259 119 67 chr9 106862679 106862885 -17213287 - L1M4 LINE L1 -1174 4972 4769 8 1400 365 236 65 80 chr9 106862885 106863023 -17213149 - B1_Mur1 SINE Alu -9 140 5 8 1400 719 259 119 67 chr9 106863023 106863218 -17212954 - L1M4 LINE L1 -1378 4768 4550 8 1400 2749 44 0 3 chr9 106863218 106863534 -17212638 - L1_Mus1 LINE L1 0 6567 6253 8 1400 591 339 35 0 chr9 106863705 106863879 -17212293 - B4A SINE B4 -111 181 2 8 1400 456 132 0 0 chr9 106864027 106864095 -17212077 - ORR1A4 LTR MaLR -8 321 254 8 1400 791 116 155 0 chr9 106864128 106864257 -17211915 - B1_Mur3 SINE Alu 0 149 1 8 1400 342 299 28 35 chr9 106864293 106864435 -17211737 - L1M4 LINE L1 -1904 4236 4096 8 1400 332 300 89 54 chr9 106864837 106865054 -17211118 + B4A SINE B4 3 230 -62 8 1400 645 283 36 25 chr9 106865383 106865579 -17210593 + B3A SINE B2 1 198 0 8 1400 258 105 0 0 chr9 106866093 106866131 -17210041 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 8 1400 261 0 0 0 chr9 106867150 106867179 -17208993 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 8 1400 194 0 0 37 chr9 106867682 106867709 -17208463 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 8 1400 251 331 70 49 chr9 106867902 106868045 -17208127 + MIRb SINE MIR 121 266 -2 8 1400 21 0 0 0 chr9 106870228 106870249 -17205923 + AT_rich Low_complexity Low_complexity 1 21 0 8 1400 549 315 22 83 chr9 106870306 106870594 -17205578 - B4A SINE B4 -7 285 26 8 1400 265 354 20 10 chr9 106870650 106870750 -17205422 - L2b LINE L2 -21 3354 3254 8 1400 874 228 169 0 chr9 106873195 106873379 -17202793 - B3 SINE B2 0 216 2 8 1400 855 302 25 86 chr9 106874659 106874794 -17201378 + MLT1A0 LTR MaLR 11 135 -230 8 1400 802 230 0 0 chr9 106874794 106874933 -17201239 - B1_Mur1 SINE Alu -10 139 1 8 1400 855 302 25 86 chr9 106874933 106875112 -17201060 + MLT1A0 LTR MaLR 136 306 -59 8 1400 296 311 217 0 chr9 106875121 106875227 -17200945 - ID_B1 SINE B4 -1 223 95 8 1400 328 214 0 0 chr9 106875245 106875301 -17200871 - PB1D9 SINE Alu -14 106 51 8 1400 3609 79 4 15 chr9 106875507 106875982 -17200190 - L1Md_F2 LINE L1 -1 6581 6112 8 1400 246 283 0 0 chr9 106876970 106877023 -17199149 + polypurine Low_complexity Low_complexity 2 54 0 8 1400 688 268 6 6 chr9 106877159 106877317 -17198855 - RSINE1 SINE B4 -4 161 4 8 1400 305 345 61 17 chr9 106877398 106877419 -17198753 + ID SINE ID 56 81 -143 8 1400 396 302 10 10 chr9 106877419 106877516 -17198656 + PB1D10 SINE Alu 1 97 -20 8 1400 261 271 196 0 chr9 106877534 106877688 -17198484 + MIRb SINE MIR 69 257 -11 8 1400 1410 233 41 47 chr9 106877692 106878056 -17198116 + MTE2b LTR MaLR 18 379 0 8 1400 3592 32 93 14 chr9 106878244 106878684 -17197488 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1400 213 146 0 24 chr9 106879482 106879524 -17196648 + A-rich Low_complexity Low_complexity 2 42 0 8 1400 1749 36 0 0 chr9 106880209 106880402 -17195770 - B2_Mm1t SINE B2 0 193 1 8 1400 306 0 0 0 chr9 106880858 106880892 -17195280 + (CACAA)n Simple_repeat Simple_repeat 2 35 0 8 1400 221 198 61 30 chr9 106881179 106881278 -17194894 + (CAAAC)n Simple_repeat Simple_repeat 1 102 0 8 1400 356 86 172 0 chr9 106881333 106881391 -17194781 - B3 SINE B2 -148 68 1 8 1400 475 273 9 9 chr9 106881453 106881564 -17194608 - PB1D10 SINE Alu -5 112 2 8 1400 2009 102 39 118 chr9 106881591 106881948 -17194224 + ORR1A4 LTR MaLR 1 329 0 8 1400 198 0 0 0 chr9 106882291 106882313 -17193859 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1400 533 276 112 25 chr9 106883596 106883793 -17192379 - B4A SINE B4 -77 215 2 8 1400 1243 171 78 3 chr9 106883995 106884281 -17191891 + Lx9 LINE L1 5600 5959 -1685 8 1400 341 147 58 14 chr9 106884308 106884377 -17191795 + ORR1C2 LTR MaLR 313 384 0 8 1400 2619 123 5 47 chr9 106884578 106884755 -17191417 + ORR1C2 LTR MaLR 1 175 -209 8 1400 1565 0 0 11 chr9 106884755 106884937 -17191235 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1400 2619 123 5 47 chr9 106884937 106885160 -17191012 + ORR1C2 LTR MaLR 176 384 0 8 1400 2963 285 40 33 chr9 106885160 106885627 -17190545 + Lx9 LINE L1 6355 6833 -811 8 1400 2033 190 12 79 chr9 106885627 106886045 -17190127 + ORR1B1 LTR MaLR 5 394 0 8 1400 2963 285 40 33 chr9 106886045 106886511 -17189661 + Lx9 LINE L1 6834 7294 -350 8 1400 4433 103 3 5 chr9 106887186 106887793 -17188379 + Lx3A LINE L1 6374 6979 -2 8 1400 341 312 62 8 chr9 106889285 106889414 -17186758 + MIR SINE MIR 79 214 -48 8 1400 474 261 89 0 chr9 106889705 106889885 -17186287 + L1MB3 LINE L1 4014 4209 -1931 8 1400 2555 261 143 17 chr9 106890116 106891108 -17185064 + Lx8 LINE L1 6095 7211 -262 8 1400 442 241 0 0 chr9 106891125 106891208 -17184964 - B3 SINE B2 -133 83 1 9 1400 593 260 73 45 chr9 106891221 106891576 -17184596 + L1MB3 LINE L1 5800 6164 -19 8 1400 303 163 0 20 chr9 106892379 106892429 -17183743 - B3A SINE B2 -132 66 18 9 1400 2206 231 83 66 chr9 106892617 106893386 -17182786 + Lx6 LINE L1 6652 7433 -27 9 1400 52 64 0 0 chr9 106894744 106894838 -17181334 + AT_rich Low_complexity Low_complexity 1 94 0 9 1400 216 0 0 0 chr9 106894873 106894897 -17181275 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 9 1400 486 0 0 0 chr9 106894901 106894955 -17181217 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 9 1400 25 0 0 0 chr9 106895062 106895087 -17181085 + AT_rich Low_complexity Low_complexity 1 25 0 9 1400 202 229 0 0 chr9 106895113 106895161 -17181011 + A-rich Low_complexity Low_complexity 1 48 0 9 1400 193 222 58 87 chr9 106896596 106896665 -17179507 + L2 LINE L2 2408 2474 -945 9 1400 676 263 26 26 chr9 106896787 106896978 -17179194 - B3A SINE B2 -5 193 3 9 1400 778 193 227 23 chr9 106897373 106897633 -17178539 + Lx5 LINE L1 6728 7040 -10 9 1400 320 243 0 41 chr9 106897787 106897860 -17178312 - RMER30 DNA MER1_type 0 202 133 9 1400 232 291 36 0 chr9 106897813 106897868 -17178304 + Charlie12 DNA MER1_type 23 79 -2794 9 1400 208 297 87 11 chr9 106898446 106898538 -17177634 + MIRc SINE MIR 85 183 -85 9 1400 186 333 76 13 chr9 106901656 106901735 -17174437 - MER5A DNA MER1_type -22 167 84 9 1400 198 71 0 0 chr9 106902413 106902441 -17173731 + (CAA)n Simple_repeat Simple_repeat 3 30 0 9 1400 210 71 0 0 chr9 106902470 106902498 -17173674 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1400 456 274 113 33 chr9 106903922 106904073 -17172099 - RSINE1 SINE B4 0 165 3 9 1400 352 283 25 113 chr9 106904083 106904113 -17172059 - B2_Mm1a SINE B2 -7 186 161 9 1400 207 69 0 0 chr9 106904113 106904142 -17172030 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1400 619 283 25 113 chr9 106904142 106904314 -17171858 - B3A SINE B2 -26 172 2 9 1400 415 312 89 6 chr9 106904334 106904492 -17171680 + MER5A DNA MER1_type 19 189 0 9 1400 1065 273 74 15 chr9 106905072 106905343 -17170829 + B4A SINE B4 6 292 0 9 1400 242 345 0 0 chr9 106905979 106906063 -17170109 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 9 1400 7956 140 44 8 chr9 106909240 106910940 -17165232 + Lx4B LINE L1 5282 7053 -5 9 1400 267 266 35 14 chr9 106911140 106911264 -17164908 + (TA)n Simple_repeat Simple_repeat 1 126 0 9 1400 297 0 0 0 chr9 106911264 106911297 -17164875 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1400 267 266 35 14 chr9 106911297 106911317 -17164855 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 1400 381 117 0 0 chr9 106911460 106911520 -17164652 + (TTTTC)n Simple_repeat Simple_repeat 2 61 0 9 1400 1166 62 7 0 chr9 106911522 106911668 -17164504 - B1_Mus2 SINE Alu 0 147 1 9 1400 207 0 0 0 chr9 106911865 106911888 -17164284 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1400 738 0 0 0 chr9 106912033 106912115 -17164057 + (CAAGT)n Simple_repeat Simple_repeat 1 82 0 9 1400 204 40 0 0 chr9 106913698 106913723 -17162449 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1400 1048 79 0 7 chr9 106913723 106913863 -17162309 - B1_Mus1 SINE Alu 0 148 10 9 1400 749 254 142 53 chr9 106914331 106914781 -17161391 - L1MC3 LINE L1 -17 7768 7279 9 1400 850 299 44 16 chr9 106914824 106915140 -17161032 - Lx5 LINE L1 -30 7020 6696 9 1400 546 306 47 42 chr9 106915149 106915340 -17160832 - B3A SINE B2 -1 197 6 9 1400 756 315 87 76 chr9 106915443 106916130 -17160042 - L1MC3 LINE L1 -588 7197 6503 9 1400 313 257 61 52 chr9 106916152 106916267 -17159905 - PB1D10 SINE Alu -1 116 1 9 1400 8949 40 3 1 chr9 106917568 106919451 -17156721 - L1Md_F2 LINE L1 0 6582 4697 9 1400 286 340 21 0 chr9 106920212 106920306 -17155866 - MIRb SINE MIR -87 181 86 9 1400 267 331 98 15 chr9 106920405 106920537 -17155635 + MIRb SINE MIR 41 183 -85 9 1400 422 314 52 10 chr9 106920562 106920755 -17155417 + Kanga2_a DNA Tc2 470 670 -218 9 1400 21 95 0 0 chr9 106920793 106920856 -17155316 + AT_rich Low_complexity Low_complexity 1 63 0 9 1400 472 65 0 0 chr9 106921213 106921275 -17154897 + Lx4A LINE L1 6546 6607 -451 9 1400 355 185 106 32 chr9 106921353 106921476 -17154696 - Lx2B LINE L1 0 7000 6869 9 1400 3085 119 11 13 chr9 106921476 106921936 -17154236 + Lx4A LINE L1 6595 7053 -5 9 1400 22 35 0 0 chr9 106921939 106921968 -17154204 + AT_rich Low_complexity Low_complexity 1 29 0 9 1400 218 32 0 31 chr9 106922701 106922733 -17153439 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 9 1400 1236 39 7 0 chr9 106922733 106922887 -17153285 - B2_Mm1a SINE B2 -37 156 2 9 1400 399 267 130 52 chr9 106923411 106923565 -17152607 + B3 SINE B2 7 172 -44 9 1400 799 44 61 0 chr9 106923538 106923652 -17152520 + MT-int LTR MaLR 699 819 -279 9 1400 5898 62 12 2 chr9 106923636 106924413 -17151759 + MT-int LTR MaLR 293 1098 0 9 1400 351 284 36 18 chr9 106924413 106924434 -17151738 + B3 SINE B2 104 124 -92 9 1400 3243 53 2 2 chr9 106924434 106924830 -17151342 + MTA_Mm LTR MaLR 1 396 0 9 1400 351 284 36 18 chr9 106924830 106924919 -17151253 + B3 SINE B2 125 216 0 9 1400 432 322 8 8 chr9 106924957 106925076 -17151096 + B1F1 SINE Alu 1 119 -30 9 1400 232 357 13 83 chr9 106925076 106925111 -17151061 + ID_B1 SINE B4 82 224 0 9 1400 1114 50 7 21 chr9 106925514 106925657 -17150515 + B1_Mus1 SINE Alu 2 142 -6 9 1400 207 0 0 0 chr9 106925662 106925685 -17150487 + (TAA)n Simple_repeat Simple_repeat 2 24 0 9 1400 1211 61 0 0 chr9 106926443 106926590 -17149582 - B1_Mus1 SINE Alu 0 148 2 9 1400 945 122 0 0 chr9 106927399 106927546 -17148626 + (GA)n Simple_repeat Simple_repeat 1 147 0 9 1400 3092 251 68 19 chr9 106927879 106928759 -17147413 + Lx7 LINE L1 6386 7308 -388 9 1400 275 0 0 28 chr9 106928759 106928795 -17147377 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1400 257 167 0 50 chr9 106928802 106928903 -17147269 + T-rich Low_complexity Low_complexity 2 97 0 9 1400 637 277 14 0 chr9 106929477 106929625 -17146547 - RSINE1 SINE B4 -15 150 1 9 1400 1031 184 0 50 chr9 106929992 106930232 -17145940 + Lx2B LINE L1 458 685 -6401 9 1400 4915 181 34 29 chr9 106930348 106931367 -17144805 + Lx2B LINE L1 5957 6981 -19 9 1400 471 18 0 0 chr9 106931374 106931430 -17144742 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 9 1400 1043 106 0 6 chr9 106931431 106931592 -17144580 + (GGAA)n Simple_repeat Simple_repeat 4 163 0 9 1400 758 250 66 6 chr9 106932135 106932297 -17143875 + B3 SINE B2 1 171 -27 9 1400 609 14 0 0 chr9 106932297 106932367 -17143805 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 1400 755 252 53 59 chr9 106932367 106932410 -17143762 + B3A SINE B2 160 194 -1 9 1400 21 0 0 0 chr9 106934050 106934071 -17142101 + AT_rich Low_complexity Low_complexity 1 21 0 9 1400 693 0 0 0 chr9 106935563 106935640 -17140532 + (TA)n Simple_repeat Simple_repeat 1 77 0 9 1400 587 247 30 65 chr9 106935866 106936065 -17140107 + RLTR18 LTR ERVK 9 200 -312 9 1400 790 277 34 111 chr9 106936086 106936439 -17139733 + RLTR18 LTR ERVK 291 616 0 9 1400 1156 49 14 0 chr9 106936607 106936751 -17139421 - B1_Mus1 SINE Alu 0 148 3 9 1400 337 246 157 6 chr9 106936752 106936928 -17139244 + L1M4 LINE L1 5133 5330 -816 9 1400 466 301 84 55 chr9 106936928 106937124 -17139048 + B4A SINE B4 1 213 -79 9 1400 405 70 0 0 chr9 106937124 106937181 -17138991 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 9 1400 466 301 84 55 chr9 106937181 106937258 -17138914 + B4A SINE B4 214 282 -10 9 1400 405 271 74 0 chr9 106937491 106937613 -17138559 - B1_Mur1 SINE Alu -5 144 14 9 1400 1774 168 56 0 chr9 106937615 106937973 -17138199 - Lx2B LINE L1 -298 5579 5202 9 1400 6203 180 42 7 chr9 106937976 106939305 -17136867 + Lx2B LINE L1 5587 6847 -153 9 1400 204 40 0 0 chr9 106939307 106939332 -17136840 + (ATG)n Simple_repeat Simple_repeat 2 26 0 9 1400 543 277 54 0 chr9 106939507 106939637 -17136535 - B1F2 SINE Alu -1 148 12 9 1400 386 329 28 35 chr9 106939637 106939652 -17136520 - ID_B1 SINE B4 -1 223 80 9 1400 3143 25 0 0 chr9 106939960 106940328 -17135844 - L1Md_A LINE L1 0 6582 6215 9 1400 290 308 102 7 chr9 106940947 106941094 -17135078 + L1_Rod LINE L1 80 240 -6932 9 1400 1837 244 31 21 chr9 106941131 106941651 -17134521 + L1_Rod LINE L1 68 592 -6580 9 1400 4191 197 58 56 chr9 106941657 106942320 -17133852 + Lx9 LINE L1 3608 4822 -1025 9 1400 525 44 0 0 chr9 106942320 106942388 -17133784 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1400 4191 210 70 56 chr9 106942388 106943589 -17132583 + Lx9 LINE L1 4823 6109 -1535 9 1400 273 192 67 124 chr9 106943614 106943703 -17132469 + RLTR25B LTR ERVK 426 509 -519 9 1400 837 52 61 0 chr9 106943630 106943745 -17132427 + B1_Mm SINE Alu 26 147 0 9 1400 4928 189 108 39 chr9 106943801 106944939 -17131233 + Lx9 LINE L1 6306 7481 -163 9 1400 261 98 0 0 chr9 106944939 106944980 -17131192 + (TGAG)n Simple_repeat Simple_repeat 2 42 0 9 1400 4928 189 108 39 chr9 106944980 106945093 -17131079 + Lx9 LINE L1 7482 7642 -2 9 1400 3689 106 52 44 chr9 106945148 106945721 -17130451 + Lx3A LINE L1 6383 6966 -15 9 1400 513 0 0 0 chr9 106945721 106945778 -17130394 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 9 1400 3689 106 52 44 chr9 106945778 106945796 -17130376 + Lx3A LINE L1 6967 6979 -2 9 1400 25 0 0 0 chr9 106945804 106945829 -17130343 + AT_rich Low_complexity Low_complexity 1 25 0 9 1400 2709 141 72 20 chr9 106945939 106946437 -17129735 + RLTR28 LTR ERVL 1 524 0 9 1400 1299 75 23 0 chr9 106946888 106947062 -17129110 + B2_Mm2 SINE B2 4 181 -14 9 1400 372 84 174 23 chr9 106947090 106947187 -17128985 + B2_Mm2 SINE B2 46 175 -18 9 1400 534 205 158 0 chr9 106947849 106947976 -17128196 + B1_Mus2 SINE Alu 1 147 0 9 1400 309 275 77 18 chr9 106948639 106948774 -17127398 + PB1D10 SINE Alu 1 140 -7 9 1400 2281 78 76 22 chr9 106948980 106949335 -17126837 - Lx LINE L1 -1 6653 6280 9 1400 391 319 177 75 chr9 106949376 106949765 -17126407 - L1ME3 LINE L1 -8 6154 5726 9 1400 419 203 0 0 chr9 106949782 106949851 -17126321 - B1_Mus1 SINE Alu -70 78 10 9 1400 240 228 34 34 chr9 106949804 106949863 -17126309 - B4A SINE B4 -152 140 82 9 1400 2658 62 87 3 chr9 106950334 106950703 -17125469 - MTB LTR MaLR 0 400 1 9 1400 597 142 141 7 chr9 106952067 106952209 -17123963 + Lx3B LINE L1 6808 6968 -5 1 1400 24 32 0 0 chr9 106952218 106952249 -17123923 + AT_rich Low_complexity Low_complexity 1 31 0 1 1400 321 154 18 9 chr9 106952886 106952949 -17123223 - tRNA-Ala-GCA tRNA tRNA -11 64 5 1 1400 501 17 0 0 chr9 106953119 106953177 -17122995 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1400 415 180 1 79 chr9 106953291 106953391 -17122781 - B1_Mur2 SINE Alu 0 149 56 1 1400 360 0 0 0 chr9 106953406 106953446 -17122726 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1401 1028 243 145 18 chr9 106955296 106955633 -17120539 + MLT1A-int LTR MaLR 1395 1735 0 1 1401 298 311 107 0 chr9 106955644 106955747 -17120425 + MLT1A LTR MaLR 14 127 -238 1 1401 467 284 123 0 chr9 106955748 106955910 -17120262 + B3A SINE B2 2 183 -15 1 1401 899 85 8 0 chr9 106956008 106956138 -17120034 + (TATATG)n Simple_repeat Simple_repeat 4 134 0 1 1401 307 347 131 20 chr9 106956138 106956282 -17119890 + MLT1A LTR MaLR 212 374 0 1 1401 38 51 0 0 chr9 106956296 106956355 -17119817 + AT_rich Low_complexity Low_complexity 1 59 0 1 1401 261 366 44 44 chr9 106957222 106957405 -17118767 + ORR1E LTR MaLR 15 197 -162 1 1401 21 36 0 0 chr9 106957724 106957752 -17118420 + AT_rich Low_complexity Low_complexity 1 28 0 1 1401 288 378 25 8 chr9 106958612 106958732 -17117440 - MIRc SINE MIR -113 155 34 1 1401 2187 44 29 0 chr9 106959383 106959655 -17116517 + L1Md_F3 LINE L1 6292 6571 -13 1 1401 263 49 24 0 chr9 106959835 106959876 -17116296 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1401 653 281 14 0 chr9 106959995 106960134 -17116038 - B4A SINE B4 -12 280 140 1 1401 1861 215 184 23 chr9 106960676 106961270 -17114902 + Lx6 LINE L1 5690 6606 -854 1 1401 431 269 86 21 chr9 106961429 106961457 -17114715 - ID_B1 SINE B4 -59 233 123 1 1401 645 221 18 0 chr9 106961457 106961570 -17114602 - B1_Mur2 SINE Alu -34 115 1 1 1401 396 321 115 23 chr9 106961706 106961923 -17114249 - HAL1 LINE L1 -27 2480 2244 1 1401 259 305 186 78 chr9 106962256 106962590 -17113582 + L2 LINE L2 2329 2698 -721 1 1401 1102 77 21 0 chr9 106963857 106964000 -17112172 + B1_Mm SINE Alu 2 147 0 1 1401 225 0 0 0 chr9 106964000 106964025 -17112147 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 1 1401 223 303 20 119 chr9 106964817 106964840 -17111332 + B4A SINE B4 77 89 -203 1 1401 464 236 104 0 chr9 106964840 106964946 -17111226 + B1_Mur3 SINE Alu 3 119 -1 1 1401 1693 196 72 31 chr9 106965606 106965617 -17110555 + MTD LTR MaLR 1 11 -408 1 1401 360 0 0 0 chr9 106965617 106965657 -17110515 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1401 1693 196 72 31 chr9 106965657 106966034 -17110138 + MTD LTR MaLR 12 404 -15 1 1401 250 305 84 12 chr9 106966299 106966382 -17109790 + PB1D10 SINE Alu 17 105 -12 1 1401 493 289 63 0 chr9 106966460 106966602 -17109570 - MER2 DNA MER2_type 0 345 195 1 1401 305 296 11 0 chr9 106967104 106967192 -17108980 + PB1D10 SINE Alu 27 115 -2 1 1401 1224 113 16 40 chr9 106967339 106967587 -17108585 - MusHAL1 LINE L1 -1792 920 679 1 1401 3420 67 9 2 chr9 106967605 106968042 -17108130 - L1_Mus2 LINE L1 -2 6564 6125 1 1401 772 229 58 90 chr9 106968288 106968662 -17107510 + RMER16 LTR ERVK 1 533 0 1 1401 357 368 0 17 chr9 106968744 106968863 -17107309 - PB1D10 SINE Alu 0 117 1 1 1401 521 185 0 0 chr9 106969103 106969195 -17106977 - Lx9 LINE L1 -936 6708 6617 1 1401 2206 154 75 113 chr9 106969190 106969870 -17106302 + Lx9 LINE L1 6984 7637 -7 1 1401 1121 68 7 0 chr9 106969902 106970048 -17106124 - B1_Mus2 SINE Alu 0 147 1 1 1401 3073 129 27 11 chr9 106970292 106970866 -17105306 - Lx3C LINE L1 -871 6105 5529 1 1401 1215 41 0 20 chr9 106970866 106971015 -17105157 + B1_Mm SINE Alu 1 146 -1 1 1401 3073 149 59 10 chr9 106971015 106971272 -17104900 - Lx3C LINE L1 -358 5528 5250 1 1401 236 85 0 41 chr9 106971282 106971331 -17104841 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 1 1401 4367 106 43 5 chr9 106971338 106971993 -17104179 - Lx3C LINE L1 -2 6974 6295 1 1401 2661 31 3 9 chr9 106971988 106972313 -17103859 - L1Md_F3 LINE L1 -14 6570 6248 1 1401 1594 77 225 17 chr9 106972313 106972730 -17103442 - Lx3C LINE L1 -672 6304 5801 1 1401 3144 124 10 4 chr9 106972798 106973309 -17102863 - Lx3C LINE L1 -688 5198 4685 1 1401 24 0 0 0 chr9 106973767 106973791 -17102381 + AT_rich Low_complexity Low_complexity 1 24 0 1 1401 1643 267 91 20 chr9 106974107 106974698 -17101474 + Lx6 LINE L1 6487 7434 -26 1 1401 255 31 0 0 chr9 106974895 106974927 -17101245 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1401 477 238 0 0 chr9 106974952 106975074 -17101098 + (TA)n Simple_repeat Simple_repeat 1 122 0 1 1401 34814 46 12 3 chr9 106975172 106980436 -17095736 + L1Md_T LINE L1 307 5586 -297 1 1401 7984 49 15 0 chr9 106980436 106981416 -17094756 + L1Md_T LINE L1 5587 6581 -1 1 1401 729 157 67 0 chr9 106981678 106981812 -17094360 - B1_Mur2 SINE Alu -6 143 1 1 1401 271 308 93 44 chr9 106982419 106982850 -17093322 - HAL1 LINE L1 -939 1568 1117 1 1401 24 0 0 0 chr9 106983552 106983576 -17092596 + AT_rich Low_complexity Low_complexity 1 24 0 1 1401 1075 229 5 5 chr9 106983719 106983934 -17092238 - B3 SINE B2 0 216 2 1 1401 459 52 0 0 chr9 106984105 106984163 -17092009 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1401 537 16 0 0 chr9 106984163 106984224 -17091948 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1401 456 282 83 21 chr9 106984235 106984380 -17091792 - RSINE1 SINE B4 0 165 12 1 1401 954 234 29 5 chr9 106986154 106986364 -17089808 - B3 SINE B2 0 216 2 1 1401 903 271 78 23 chr9 106986367 106986711 -17089461 + MLT1A0 LTR MaLR 1 363 -2 1 1401 201 233 22 11 chr9 106986712 106986803 -17089369 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 1401 22 88 0 0 chr9 106986831 106986888 -17089284 + AT_rich Low_complexity Low_complexity 1 57 0 1 1401 340 340 93 0 chr9 106986888 106987050 -17089122 + MLT1G1 LTR MaLR 16 192 -387 1 1401 24 32 0 0 chr9 106987744 106987775 -17088397 + AT_rich Low_complexity Low_complexity 1 31 0 1 1401 279 299 37 58 chr9 106988016 106988151 -17088021 - B1F1 SINE Alu -17 133 1 1 1401 4706 80 6 6 chr9 106988246 106988912 -17087260 + Lx3_Mus LINE L1 6324 6989 -20 1 1401 261 0 0 0 chr9 106988912 106988941 -17087231 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1401 303 334 130 27 chr9 106988955 106989366 -17086806 + HAL1 LINE L1 1664 2183 -324 1 1401 5160 46 1 0 chr9 106990424 106991101 -17085071 - L1Md_Gf LINE L1 -2656 3230 2553 1 1401 2702 141 33 39 chr9 106991094 106992349 -17083823 - L1Md_Gf LINE L1 -4272 1614 417 1 1401 1048 240 69 77 chr9 106992360 106992559 -17083613 - L1M3 LINE L1 -1657 4483 4290 1 1401 1202 40 14 0 chr9 106992559 106992707 -17083465 + B1_Mur4 SINE Alu 1 150 0 1 1401 1048 240 69 77 chr9 106992707 106993016 -17083156 - L1M3 LINE L1 -1851 4289 3979 1 1401 1130 228 128 24 chr9 106993027 106993323 -17082849 + MTEa LTR MaLR 8 334 -45 1 1401 1674 132 89 10 chr9 106993428 106993762 -17082410 - ORR1A2 LTR MaLR -13 381 1 1 1401 7659 102 16 4 chr9 106993762 106994924 -17081248 - ORR1A2-int LTR MaLR 0 1963 789 1 1401 233 119 70 23 chr9 106994887 106994930 -17081242 - MT2B LTR ERVL -344 257 213 1 1401 2630 269 117 39 chr9 106995005 106996144 -17080028 + Lx8 LINE L1 6237 7464 -9 1 1401 270 258 262 14 chr9 106996285 106996564 -17079608 - L1M3 LINE L1 -2525 3615 3268 1 1401 367 250 20 30 chr9 106996577 106996676 -17079496 - PB1D10 SINE Alu -18 99 2 1 1401 503 257 48 41 chr9 106996813 106996959 -17079213 - B1F2 SINE Alu -2 147 1 1 1401 517 279 57 36 chr9 106997430 106997623 -17078549 - B3A SINE B2 0 198 2 1 1401 344 328 57 0 chr9 106997704 106997826 -17078346 - B1F SINE Alu -6 143 15 1 1401 813 188 0 0 chr9 106997866 106997999 -17078173 - B1_Mur4 SINE Alu -16 134 2 1 1401 1912 133 9 3 chr9 106998408 106998740 -17077432 - L1_Mur3 LINE L1 -1337 4543 4210 1 1401 2127 193 93 7 chr9 106998743 106999281 -17076891 + L1_Mur3 LINE L1 4665 5248 -632 1 1401 822 75 0 0 chr9 106999282 106999388 -17076784 + U6 snRNA snRNA 2 107 0 1 1401 4309 89 2 5 chr9 106999389 107000000 -17076172 + L1Md_F2 LINE L1 5904 6512 -70 1 1401 282 45 45 0 chr9 107000013 107000057 -17076115 - L1_Mm LINE L1 -876 5007 4962 1 1401 11407 67 2 0 chr9 107000055 107001627 -17074545 + L1_Mm LINE L1 3399 4973 -910 1 1401 200 190 35 0 chr9 107002765 107002823 -17073349 + T-rich Low_complexity Low_complexity 4 63 0 2 1401 35 24 0 0 chr9 107002934 107002976 -17073196 + AT_rich Low_complexity Low_complexity 1 42 0 3 1401 582 270 7 13 chr9 107003062 107003212 -17072960 + B1_Mur3 SINE Alu 1 149 0 4 1401 583 357 21 42 chr9 107003349 107003776 -17072396 + ERVL-E-int LTR ERVL 3400 3817 -1850 5 1401 4392 56 0 11 chr9 107003817 107004373 -17071799 + L1_Mus1 LINE L1 6018 6567 0 6 1401 463 332 109 18 chr9 107004523 107004854 -17071318 + ERVL-E-int LTR ERVL 4171 4531 -1230 5 1401 318 350 11 16 chr9 107004967 107005153 -17071019 + ERVL-E-int LTR ERVL 4657 4841 -826 5 1401 436 281 33 0 chr9 107005153 107005274 -17070898 + B1F SINE Alu 22 146 -3 7 1401 32 67 0 0 chr9 107005326 107005386 -17070786 + AT_rich Low_complexity Low_complexity 1 60 0 8 1401 459 236 9 9 chr9 107005655 107005762 -17070410 - B1_Mus2 SINE Alu -1 146 40 9 1401 810 161 15 0 chr9 107005927 107006057 -17070115 - B1_Mur3 SINE Alu -5 144 13 1 1401 8762 23 7 0 chr9 107006058 107007134 -17069038 + L1Md_T LINE L1 4503 5586 -297 1 1401 8418 30 6 0 chr9 107007134 107008173 -17067999 + L1Md_T LINE L1 5587 6582 0 1 1401 22 56 0 0 chr9 107008327 107008363 -17067809 + AT_rich Low_complexity Low_complexity 1 36 0 1 1401 636 298 93 12 chr9 107008900 107009460 -17066712 - L1MD LINE L1 -656 5703 5100 1 1401 239 228 65 56 chr9 107009541 107009648 -17066524 + L1MA9 LINE L1 5458 5565 -735 1 1401 22 0 0 0 chr9 107010487 107010509 -17065663 + AT_rich Low_complexity Low_complexity 1 22 0 1 1401 21 0 0 0 chr9 107010584 107010605 -17065567 + AT_rich Low_complexity Low_complexity 1 21 0 1 1401 299 330 27 18 chr9 107011173 107011395 -17064777 + L1M3c LINE L1 917 1140 -5001 1 1401 1256 21 0 0 chr9 107011414 107011558 -17064614 + B1_Mus2 SINE Alu 1 144 -3 1 1401 265 260 78 0 chr9 107012165 107012242 -17063930 + ID2 SINE ID 1 83 0 1 1401 271 141 54 40 chr9 107012305 107012379 -17063793 + L1M3 LINE L1 4217 4291 -1849 2 1401 22 0 0 0 chr9 107012407 107012429 -17063743 + AT_rich Low_complexity Low_complexity 1 22 0 2 1401 586 254 125 32 chr9 107012454 107012767 -17063405 + L1MA9 LINE L1 5858 6199 -113 1 1401 4288 148 67 4 chr9 107012841 107013657 -17062515 + L1_Mur2 LINE L1 3895 4762 -1115 2 1401 3688 113 58 25 chr9 107013655 107014340 -17061832 - Lx2 LINE L1 -749 6248 5536 2 1401 3999 122 106 3 chr9 107014340 107015007 -17061165 + Lx2 LINE L1 6256 6991 -6 2 1401 414 100 0 0 chr9 107015067 107015127 -17061045 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1401 228 35 0 0 chr9 107016338 107016367 -17059805 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1401 180 0 0 0 chr9 107016546 107016566 -17059606 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1401 381 313 121 13 chr9 107016716 107016838 -17059334 + B3A SINE B2 10 148 -50 2 1401 186 43 0 0 chr9 107016838 107016861 -17059311 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1401 1197 68 0 0 chr9 107016861 107017037 -17059135 + (GA)n Simple_repeat Simple_repeat 2 178 0 2 1401 381 313 121 13 chr9 107017037 107017062 -17059110 + B3A SINE B2 149 173 -25 2 1401 189 0 0 0 chr9 107017703 107017724 -17058448 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1401 607 309 87 37 chr9 107018031 107018273 -17057899 - B4A SINE B4 -19 273 20 3 1401 514 344 64 58 chr9 107018707 107018824 -17057348 - B4 SINE B4 -18 274 82 3 1401 2153 196 64 67 chr9 107018824 107019198 -17056974 + MT2A LTR ERVL 1 347 -186 3 1401 592 193 40 73 chr9 107019198 107019349 -17056823 - B1_Mus1 SINE Alu 0 148 3 3 1401 2153 196 64 67 chr9 107019349 107019509 -17056663 + MT2A LTR ERVL 348 532 -1 3 1401 514 328 81 78 chr9 107019509 107019692 -17056480 - B4 SINE B4 -120 172 4 3 1401 204 40 0 0 chr9 107019833 107019858 -17056314 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1401 358 306 87 46 chr9 107019980 107020199 -17055973 + MER34A LTR ERV1 264 491 -80 3 1401 405 0 0 0 chr9 107020200 107020245 -17055927 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1401 395 257 97 35 chr9 107020282 107020395 -17055777 + PB1D9 SINE Alu 1 120 0 3 1401 391 256 6 6 chr9 107020439 107020616 -17055556 + GA-rich Low_complexity Low_complexity 3 179 0 3 1401 765 71 0 9 chr9 107020637 107020750 -17055422 - Lx3C LINE L1 -948 6028 5917 4 1401 831 78 0 25 chr9 107020739 107020858 -17055314 + Lx3_Mus LINE L1 5790 5905 -1104 4 1401 4824 84 58 16 chr9 107020937 107021949 -17054223 + Lx3C LINE L1 5346 6382 -594 4 1401 3157 177 35 20 chr9 107021949 107022750 -17053422 + RMER13B LTR ERVK 1 897 -11 4 1401 3504 116 92 4 chr9 107022750 107023302 -17052870 + Lx3C LINE L1 6376 6976 0 4 1401 280 390 12 0 chr9 107023322 107023404 -17052768 + ID4_ SINE ID 1 83 0 4 1401 24 85 0 0 chr9 107023417 107023476 -17052696 + AT_rich Low_complexity Low_complexity 1 59 0 4 1401 11867 97 17 8 chr9 107024088 107026571 -17049601 + L1Md_A LINE L1 449 2935 -2948 4 1401 198 0 0 0 chr9 107026574 107026596 -17049576 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1401 1764 41 0 14 chr9 107026600 107026822 -17049350 - L1Md_F3 LINE L1 -16 6568 6350 4 1401 2572 25 0 3 chr9 107026856 107027175 -17048997 + L1Md_F2 LINE L1 5269 5586 -297 5 1401 7955 51 4 3 chr9 107027175 107028167 -17048005 + L1Md_F2 LINE L1 5587 6579 -3 5 1401 23 54 0 0 chr9 107028183 107028220 -17047952 + AT_rich Low_complexity Low_complexity 1 37 0 5 1401 225 121 0 0 chr9 107028235 107028268 -17047904 + U2 snRNA snRNA 1 33 -155 5 1401 373 193 88 48 chr9 107028508 107028633 -17047539 - Lx7 LINE L1 -2 7694 7565 5 1401 2554 120 46 48 chr9 107028633 107029090 -17047082 + Lx LINE L1 6194 6649 -5 5 1401 1076 72 0 0 chr9 107029107 107029245 -17046927 + B1_Mus2 SINE Alu 10 147 0 5 1401 260 158 105 38 chr9 107029258 107029363 -17046809 - Lx7 LINE L1 -120 7576 7465 5 1401 437 313 41 112 chr9 107029385 107029554 -17046618 + B4 SINE B4 67 223 -69 5 1401 823 187 14 21 chr9 107029414 107029556 -17046616 + B1_Mur1 SINE Alu 9 149 0 5 1401 3621 68 6 26 chr9 107029611 107030112 -17046060 - L1_Mus4 LINE L1 -5 6631 6141 5 1401 39571 3 0 0 chr9 107030312 107036894 -17039278 - L1Md_A LINE L1 0 6582 1 5 1401 39 0 0 0 chr9 107037366 107037405 -17038767 + AT_rich Low_complexity Low_complexity 1 39 0 6 1401 300 70 0 0 chr9 107038731 107038774 -17037398 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 6 1401 974 83 61 0 chr9 107038774 107038906 -17037266 - B1_Mus1 SINE Alu -7 141 2 6 1401 760 262 83 64 chr9 107038916 107039277 -17036895 + Lx8 LINE L1 2785 3129 -3014 6 1401 212 18 123 0 chr9 107039277 107039334 -17036838 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1401 760 262 83 64 chr9 107039334 107039600 -17036572 + Lx8 LINE L1 3130 3423 -2720 6 1401 492 296 85 95 chr9 107039623 107040071 -17036101 + Lx8 LINE L1 4436 4938 -1205 6 1401 7109 91 68 1 chr9 107040071 107041108 -17035064 + Lx3_Mus LINE L1 5891 6996 -13 6 1401 2067 294 75 40 chr9 107041108 107042884 -17033288 + Lx8 LINE L1 4939 6699 -774 6 1401 19359 17 3 0 chr9 107042891 107045243 -17030929 - L1Md_T LINE L1 -354 5529 3171 6 1401 487 18 0 0 chr9 107045241 107045298 -17030874 + L1Md_T LINE L1 5530 5586 -297 6 1401 8237 46 0 0 chr9 107045298 107046294 -17029878 + L1Md_T LINE L1 5587 6582 0 6 1401 298 288 9 55 chr9 107046440 107046550 -17029622 + RMER4B LTR ERVK 25 129 -456 6 1401 706 215 98 0 chr9 107046761 107046924 -17029248 + Lx8 LINE L1 6765 6943 -530 6 1401 1578 218 69 17 chr9 107046952 107047312 -17028860 - MTD LTR MaLR -17 402 24 6 1401 402 234 0 0 chr9 107047374 107047468 -17028704 + Lx8 LINE L1 6974 7067 -406 6 1401 1689 182 40 3 chr9 107047468 107047765 -17028407 + RLTR27 LTR ERVK 1 308 -1 6 1401 282 109 0 21 chr9 107047803 107047850 -17028322 + RLTR10-int LTR ERVK 222 267 -7314 7 1401 661 228 45 45 chr9 107047881 107048079 -17028093 + RLTR10-int LTR ERVK 655 852 -1135 7 1401 260 276 44 44 chr9 107048442 107048624 -17027548 + RLTR10-int LTR ERVK 1254 1435 -5386 7 1401 372 308 18 12 chr9 107048705 107048876 -17027296 + MMERVK10C-int LTR ERVK 6898 7069 -512 7 1401 1434 123 27 31 chr9 107049011 107049272 -17026900 + MMERVK10C-int LTR ERVK 7321 7580 -1 7 1401 1541 183 64 27 chr9 107049273 107049571 -17026601 + RLTR27 LTR ERVK 1 309 0 7 1401 893 284 67 55 chr9 107049576 107049978 -17026194 + Lx8 LINE L1 7066 7472 -1 6 1401 708 241 0 0 chr9 107050048 107050181 -17025991 + B1_Mur3 SINE Alu 1 133 -16 7 1401 432 0 0 0 chr9 107050193 107050241 -17025931 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 7 1401 278 222 0 45 chr9 107050241 107050307 -17025865 + B1_Mur2 SINE Alu 84 146 -3 7 1401 357 24 0 0 chr9 107050316 107050358 -17025814 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 7 1401 297 229 51 83 chr9 107050399 107050556 -17025616 + L1M2 LINE L1 5206 5357 -786 7 1401 1020 267 14 0 chr9 107050563 107050773 -17025399 + B3 SINE B2 1 213 -3 7 1401 868 293 83 75 chr9 107050847 107051220 -17024952 + MT2A LTR ERVL 6 381 -152 7 1401 371 315 0 0 chr9 107051391 107051483 -17024689 - Lx8 LINE L1 -1149 6324 6233 7 1401 368 229 0 84 chr9 107052089 107052187 -17023985 + B1F SINE Alu 57 147 -2 8 1401 659 223 65 33 chr9 107054008 107054161 -17022011 + RSINE1 SINE B4 4 161 -4 8 1401 225 0 0 0 chr9 107054274 107054299 -17021873 + (CTCG)n Simple_repeat Simple_repeat 2 26 0 8 1401 414 0 0 0 chr9 107054319 107054365 -17021807 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1401 629 261 109 62 chr9 107054389 107054646 -17021526 - B4A SINE B4 -18 274 6 8 1401 26 50 0 0 chr9 107055036 107055076 -17021096 + AT_rich Low_complexity Low_complexity 1 40 0 8 1401 774 168 43 14 chr9 107055089 107055228 -17020944 + B1_Mur2 SINE Alu 7 149 0 8 1401 219 88 0 0 chr9 107055439 107055473 -17020699 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 8 1401 901 194 86 0 chr9 107055488 107055663 -17020509 + B3 SINE B2 2 191 -25 8 1401 22 0 0 0 chr9 107055663 107055685 -17020487 + AT_rich Low_complexity Low_complexity 1 22 0 8 1401 459 0 0 0 chr9 107055988 107056039 -17020133 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1401 23 0 0 0 chr9 107056067 107056090 -17020082 + AT_rich Low_complexity Low_complexity 1 23 0 9 1401 1006 116 0 26 chr9 107056117 107056268 -17019904 + B1_Mus1 SINE Alu 2 148 0 9 1401 232 250 0 0 chr9 107056278 107056326 -17019846 + ID4_ SINE ID 35 82 -1 9 1401 1301 116 37 0 chr9 107056516 107056731 -17019441 - Lx2 LINE L1 0 6997 6775 9 1401 4020 117 23 12 chr9 107056729 107057377 -17018795 - Lx2 LINE L1 -352 6645 5991 9 1401 3110 173 59 23 chr9 107058312 107059410 -17016762 - L1Md_F LINE L1 -5297 1244 125 9 1401 819 252 22 123 chr9 107059455 107059670 -17016502 + B4 SINE B4 2 218 -74 9 1401 453 81 0 0 chr9 107059670 107059732 -17016440 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 9 1401 819 252 22 123 chr9 107059732 107059833 -17016339 + B4 SINE B4 219 286 -6 9 1401 1219 41 7 0 chr9 107060133 107060280 -17015892 + B1_Mus1 SINE Alu 1 148 0 9 1401 543 153 0 0 chr9 107060283 107060381 -17015791 + GA-rich Low_complexity Low_complexity 2 99 0 9 1401 312 91 0 0 chr9 107060373 107060417 -17015755 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1401 311 315 115 0 chr9 107060507 107060637 -17015535 + MER20 DNA MER1_type 74 218 -1 1 1401 23 101 0 0 chr9 107060733 107060812 -17015360 + AT_rich Low_complexity Low_complexity 1 79 0 1 1401 272 269 12 25 chr9 107060864 107060944 -17015228 + ID4_ SINE ID 2 80 -3 1 1401 1261 92 0 0 chr9 107060985 107061149 -17015023 + B2_Mm2 SINE B2 1 164 -31 1 1401 306 0 0 0 chr9 107061152 107061186 -17014986 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1401 22 35 0 0 chr9 107061936 107061965 -17014207 + AT_rich Low_complexity Low_complexity 1 29 0 1 1401 1226 48 0 0 chr9 107062558 107062704 -17013468 - B1_Mus2 SINE Alu 0 147 2 1 1401 520 259 40 0 chr9 107062836 107063010 -17013162 + L1MC LINE L1 4747 4927 -1219 1 1401 432 0 0 0 chr9 107063015 107063063 -17013109 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1401 309 180 16 0 chr9 107063276 107063337 -17012835 + Lx6 LINE L1 6530 6591 -869 1 1401 5669 123 49 64 chr9 107063343 107063836 -17012336 - L1_Mur3 LINE L1 -2642 3238 2748 1 1401 1153 115 10 63 chr9 107063836 107064041 -17012131 - B2_Mm2 SINE B2 0 195 2 1 1401 5669 123 49 64 chr9 107064041 107064274 -17011898 - L1_Mur3 LINE L1 -3133 2747 2513 1 1401 4632 143 73 27 chr9 107064274 107065136 -17011036 + RMER19B LTR ERVK 1 902 0 1 1401 5669 123 49 64 chr9 107065136 107065585 -17010587 - L1_Mur3 LINE L1 -3368 2512 2079 1 1401 333 0 0 0 chr9 107065585 107065622 -17010550 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1 1401 5669 123 49 64 chr9 107065622 107065656 -17010516 - L1_Mur3 LINE L1 -3802 2078 2046 1 1401 1206 269 7 43 chr9 107066467 107066770 -17009402 - B4A SINE B4 0 292 1 1 1401 357 223 11 0 chr9 107067205 107067299 -17008873 + Lx2B LINE L1 6902 6996 -4 1 1401 781 212 12 0 chr9 107067853 107068013 -17008159 + RMER1B Other Other 60 221 -845 1 1401 2472 258 113 72 chr9 107068060 107068499 -17007673 + RMER1A Other Other 1 449 -581 1 1401 396 0 0 0 chr9 107068499 107068543 -17007629 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1401 2483 213 152 45 chr9 107068543 107069398 -17006774 + RMER1B Other Other 250 1060 -6 1 1401 540 335 26 0 chr9 107069463 107069618 -17006554 + RSINE1 SINE B4 6 164 -1 1 1401 23 78 0 0 chr9 107069653 107069704 -17006468 + AT_rich Low_complexity Low_complexity 1 51 0 1 1401 815 265 149 30 chr9 107069786 107070082 -17006090 - MTEa LTR MaLR -7 372 42 1 1401 448 151 0 14 chr9 107070201 107070275 -17005897 + B1_Mus2 SINE Alu 75 147 0 1 1401 1212 54 0 0 chr9 107070278 107070425 -17005747 + B1_Mus2 SINE Alu 1 147 0 1 1401 934 153 43 21 chr9 107070878 107071065 -17005107 - B2_Mm2 SINE B2 -3 192 2 1 1401 28 48 0 0 chr9 107071662 107071704 -17004468 + AT_rich Low_complexity Low_complexity 1 42 0 1 1401 464 338 25 38 chr9 107071712 107071869 -17004303 + RSINE1 SINE B4 6 160 -5 1 1401 180 322 32 43 chr9 107073229 107073323 -17002849 - L3 LINE CR1 -3 4486 4394 1 1401 3362 176 116 31 chr9 107074187 107074904 -17001268 + RMER13A LTR ERVK 1 778 -82 1 1401 861 98 68 0 chr9 107075304 107075436 -17000736 - B1_Mm SINE Alu 0 147 7 1 1401 858 152 51 0 chr9 107075440 107075578 -17000594 - B1_Mus1 SINE Alu -2 146 2 1 1401 213 39 0 0 chr9 107075977 107076003 -17000169 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1401 323 250 159 126 chr9 107076019 107076170 -17000002 - RSINE1 SINE B4 0 165 10 1 1401 2639 102 2 0 chr9 107076337 107076730 -16999442 - L1_Mus2 LINE L1 -973 4910 4517 1 1401 5906 100 54 33 chr9 107076729 107078260 -16997912 + L1_Mus2 LINE L1 4962 6523 -43 1 1401 975 223 194 0 chr9 107078334 107078641 -16997531 + MTEb LTR MaLR 10 379 0 1 1401 205 138 0 0 chr9 107079284 107079313 -16996859 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1401 335 250 0 0 chr9 107079344 107079412 -16996760 - B3A SINE B2 -130 68 1 1 1401 326 269 30 77 chr9 107079418 107079587 -16996585 - L1M2 LINE L1 -3034 3109 2949 1 1401 560 270 141 33 chr9 107079798 107079982 -16996190 + B3 SINE B2 1 204 -12 1 1401 25 31 0 0 chr9 107079984 107080016 -16996156 + AT_rich Low_complexity Low_complexity 1 32 0 1 1401 587 275 219 17 chr9 107080342 107080406 -16995766 - B4A SINE B4 -4 288 225 1 1401 757 249 47 11 chr9 107080406 107080597 -16995575 - B3A SINE B2 0 198 1 1 1401 587 275 219 17 chr9 107080597 107080769 -16995403 - B4A SINE B4 -68 224 4 1 1401 1153 69 0 14 chr9 107081037 107081184 -16994988 + B1_Mm SINE Alu 2 146 -1 1 1401 279 292 28 88 chr9 107082131 107082382 -16993790 + L1M3e LINE L1 1747 1982 -5048 1 1401 231 270 78 16 chr9 107082409 107082473 -16993699 + ID_B1 SINE B4 78 145 -79 1 1401 561 40 27 0 chr9 107082556 107082631 -16993541 - L1_Mus3 LINE L1 -595 6043 5967 1 1401 2930 84 116 0 chr9 107082631 107083061 -16993111 + L1_Mus4 LINE L1 6145 6624 -12 1 1401 513 0 0 0 chr9 107083061 107083118 -16993054 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1401 210 171 0 0 chr9 107083163 107083204 -16992968 + A-rich Low_complexity Low_complexity 1 41 0 1 1401 2356 47 50 0 chr9 107083768 107084068 -16992104 - L1Md_F2 LINE L1 -11 6571 6257 1 1401 1123 65 0 0 chr9 107084294 107084432 -16991740 + B1_Mus2 SINE Alu 1 138 -9 1 1401 207 0 0 0 chr9 107084432 107084455 -16991717 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1401 1272 14 7 0 chr9 107084606 107084752 -16991420 - B1_Mus2 SINE Alu 0 147 1 1 1401 675 150 83 0 chr9 107085583 107085703 -16990469 + B1_Mur4 SINE Alu 2 131 -19 1 175 888 249 29 15 chr9 107085719 107085923 -16990249 + B3 SINE B2 3 209 -7 1 1402 2015 189 39 39 chr9 107086441 107087280 -16988892 + Lx5 LINE L1 888 1736 -4141 1 1402 7404 119 18 34 chr9 107087285 107088972 -16987200 + Lx2B LINE L1 4684 6346 -654 1 1402 1228 41 0 0 chr9 107088972 107089118 -16987054 + B1_Mus2 SINE Alu 2 147 0 1 1402 6873 178 30 24 chr9 107089118 107089768 -16986404 + Lx2B LINE L1 6347 6996 -4 1 1402 7166 173 84 9 chr9 107089735 107091701 -16984471 + Lx5 LINE L1 3119 5604 -282 1 1402 261 83 0 0 chr9 107091701 107091737 -16984435 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1 1402 6554 235 113 6 chr9 107091737 107092594 -16983578 + Lx5 LINE L1 5605 6736 -724 1 1402 715 242 81 0 chr9 107093594 107093805 -16982367 - Lx6 LINE L1 -1246 6214 5987 1 1402 269 245 0 0 chr9 107094086 107094135 -16982037 + PB1D9 SINE Alu 3 51 -69 1 1402 282 315 72 0 chr9 107094412 107094523 -16981649 + PB1D7 SINE Alu 1 119 -1 1 1402 546 152 16 16 chr9 107094525 107094621 -16981551 - MT2B2 LTR ERVL -454 147 52 1 1402 3746 90 2 17 chr9 107094621 107095143 -16981029 + MT2B2 LTR ERVL 1 514 -70 1 1402 1450 74 5 0 chr9 107096439 107096629 -16979543 + B2_Mm1t SINE B2 2 192 -1 1 1402 464 84 547 0 chr9 107096660 107096744 -16979428 + B1_Mus1 SINE Alu 2 137 -11 1 1402 246 32 0 0 chr9 107096744 107096775 -16979397 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1402 201 195 0 0 chr9 107097398 107097439 -16978733 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1402 313 185 45 15 chr9 107097595 107097661 -16978511 + B4A SINE B4 82 149 -143 1 1402 350 115 47 47 chr9 107097605 107097669 -16978503 + B1_Mur4 SINE Alu 10 73 -77 1 1402 198 0 0 0 chr9 107097695 107097717 -16978455 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 1 1402 207 0 0 0 chr9 107097738 107097761 -16978411 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1402 535 176 111 8 chr9 107097761 107097887 -16978285 - B1_Mus2 SINE Alu -8 139 1 1 1402 628 197 94 13 chr9 107097971 107098120 -16978052 - Lx6 LINE L1 -87 7373 7213 1 1402 590 164 6 66 chr9 107098135 107098318 -16977854 + Lx7 LINE L1 7358 7529 -167 1 1402 3582 139 56 51 chr9 107098335 107099046 -16977126 - RLTR19B LTR ERVK 0 715 1 1 1402 839 116 12 141 chr9 107099311 107099481 -16976691 + B1_Mus1 SINE Alu 1 148 0 1 1402 194 0 0 37 chr9 107099488 107099515 -16976657 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1402 233 369 0 30 chr9 107099764 107099831 -16976341 + B4A SINE B4 86 150 -142 1 1402 5788 70 9 24 chr9 107099831 107100510 -16975662 + L1VL2 LINE L1 509 1187 -5447 1 1402 1614 26 0 25 chr9 107100510 107100707 -16975465 + B2_Mm1a SINE B2 2 193 0 1 1402 10233 125 17 40 chr9 107100707 107101243 -16974929 + L1VL2 LINE L1 1188 1708 -4178 1 1402 1039 76 14 14 chr9 107101243 107101389 -16974783 + B1_Mm SINE Alu 2 147 0 1 1402 10233 149 20 47 chr9 107101389 107103026 -16973146 + L1VL2 LINE L1 1709 3292 -2594 1 1402 32 0 0 0 chr9 107103112 107103144 -16973028 + AT_rich Low_complexity Low_complexity 1 32 0 1 1402 411 289 31 0 chr9 107103144 107103241 -16972931 + B1F SINE Alu 49 148 -1 1 1402 252 312 0 15 chr9 107103254 107103319 -16972853 + ID4 SINE ID 2 65 -18 1 1402 722 268 78 12 chr9 107103384 107103705 -16972467 + L1M2 LINE L1 2283 2624 -4225 1 1402 28 71 0 0 chr9 107103829 107103885 -16972287 + AT_rich Low_complexity Low_complexity 1 56 0 1 1402 1367 82 22 0 chr9 107104128 107104312 -16971860 - B2_Mm2 SINE B2 -7 188 1 1 1402 3526 102 19 50 chr9 107104386 107104567 -16971605 - L1_Mur1 LINE L1 -1058 4828 4647 1 1402 208 0 0 59 chr9 107104567 107104601 -16971571 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1 1402 3526 102 19 50 chr9 107104601 107104644 -16971528 - L1_Mur1 LINE L1 -1240 4646 4595 1 1402 5485 42 0 6 chr9 107104644 107105307 -16970865 + L1Md_F2 LINE L1 5911 6569 -13 1 1402 3526 102 19 50 chr9 107105307 107105699 -16970473 - L1_Mur1 LINE L1 -1292 4594 4232 1 1402 4300 96 41 5 chr9 107105700 107106331 -16969841 + Lx3A LINE L1 6326 6979 -2 1 1402 1770 179 110 51 chr9 107106349 107106630 -16969542 + Lx9 LINE L1 7157 7437 -207 1 1402 459 0 0 0 chr9 107106630 107106681 -16969491 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1 1402 207 0 0 0 chr9 107106681 107106703 -16969469 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1402 1033 65 0 104 chr9 107106703 107106857 -16969315 - B1_Mus2 SINE Alu -9 138 1 1 1402 1770 179 110 51 chr9 107106857 107106913 -16969259 + Lx9 LINE L1 7438 7474 -170 1 1402 192 77 0 0 chr9 107106913 107106939 -16969233 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1402 1770 179 110 51 chr9 107106939 107107052 -16969120 + Lx9 LINE L1 7475 7634 -10 1 1402 811 261 127 34 chr9 107107139 107107580 -16968592 + L1M2 LINE L1 3116 3597 -3248 1 1402 480 302 37 44 chr9 107107634 107107769 -16968403 + RSINE1 SINE B4 3 136 -29 1 1402 261 0 0 0 chr9 107107775 107107804 -16968368 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1402 415 225 206 34 chr9 107107824 107108265 -16967907 + L1M2 LINE L1 3626 4142 -2700 1 1402 505 172 21 0 chr9 107108435 107108528 -16967644 + B3 SINE B2 117 211 -5 1 1402 312 300 121 31 chr9 107109005 107109394 -16966778 + L1M2 LINE L1 2167 2590 -4259 1 1402 811 222 170 42 chr9 107109419 107109678 -16966494 - ORR1E LTR MaLR -60 299 8 2 1402 214 324 155 0 chr9 107109732 107109803 -16966369 - ID4_ SINE ID 0 83 2 2 1402 12804 56 8 6 chr9 107109834 107112226 -16963946 - L1Md_F2 LINE L1 0 6582 4184 2 1402 317 231 99 14 chr9 107112372 107112536 -16963636 + L1M2 LINE L1 2762 2939 -3906 1 1402 929 192 84 113 chr9 107112547 107112931 -16963241 + ORR1C2 LTR MaLR 1 356 -38 2 1402 6359 18 0 0 chr9 107112931 107113649 -16962523 + L1Md_T LINE L1 4869 5586 -297 2 1402 8723 28 0 0 chr9 107113649 107114645 -16961527 + L1Md_T LINE L1 5587 6582 0 2 1402 180 77 0 0 chr9 107114705 107114731 -16961441 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1402 714 66 0 0 chr9 107114740 107114831 -16961341 - B1_Mus2 SINE Alu -2 145 55 2 1402 280 116 0 0 chr9 107114831 107114874 -16961298 + ORR1C2 LTR MaLR 342 384 0 2 1402 1164 75 0 0 chr9 107114897 107115043 -16961129 + B1_Mus1 SINE Alu 3 148 0 2 1402 300 226 58 97 chr9 107115092 107115195 -16960977 - B1_Mur4 SINE Alu -5 115 17 2 1402 548 62 12 0 chr9 107115206 107115287 -16960885 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 1402 481 232 79 7 chr9 107115287 107115424 -16960748 - B3 SINE B2 -28 188 32 2 1402 358 274 61 11 chr9 107115448 107115629 -16960543 + L1M2 LINE L1 3442 3631 -3214 1 1402 687 253 95 18 chr9 107115637 107115806 -16960366 + B3A SINE B2 1 182 -16 2 1402 566 148 7 43 chr9 107115806 107115947 -16960225 + (CATA)n Simple_repeat Simple_repeat 1 136 0 2 1402 3828 32 5 0 chr9 107115949 107116383 -16959789 + RLTR10C LTR ERVK 1 436 0 2 1402 1975 94 155 105 chr9 107116383 107116763 -16959409 + MMERVK10C-int LTR ERVK 1 399 -7182 2 1402 24836 40 0 1 chr9 107116761 107119638 -16956534 + MMERVK10C-int LTR ERVK 870 3743 -3838 2 1402 9000 32 0 0 chr9 107119631 107120652 -16955520 + MMERVK10C-int LTR ERVK 4790 5810 -1771 2 1402 8211 30 4 1 chr9 107120643 107121571 -16954601 + MMERVK10C-int LTR ERVK 6651 7581 0 2 1402 3828 32 5 0 chr9 107121571 107122005 -16954167 + RLTR10C LTR ERVK 1 436 0 2 1402 531 306 46 39 chr9 107122065 107122218 -16953954 + RSINE1 SINE B4 12 165 0 2 1402 1752 241 42 29 chr9 107122231 107122806 -16953366 + RLTR20B3 LTR ERVK 42 563 -14 2 1402 23 0 0 0 chr9 107122824 107122847 -16953325 + AT_rich Low_complexity Low_complexity 1 23 0 2 1402 280 288 121 88 chr9 107122900 107123135 -16953037 + L1M3de LINE L1 1828 2080 -4353 2 1402 1648 21 0 20 chr9 107123135 107123331 -16952841 + B2_Mm1a SINE B2 1 192 -1 2 1402 287 265 90 66 chr9 107123331 107123526 -16952646 + L1M3de LINE L1 2081 2272 -4161 2 1402 379 337 177 45 chr9 107123585 107123896 -16952276 + MTEa LTR MaLR 20 371 -8 2 1402 925 271 68 38 chr9 107123870 107124241 -16951931 - MTEb LTR MaLR -15 364 3 2 1402 303 318 58 66 chr9 107124243 107124761 -16951411 + L1M3de LINE L1 2269 2782 -3651 2 1402 244 354 0 0 chr9 107124767 107124863 -16951309 + ID_B1 SINE B4 80 175 -49 2 1402 365 265 35 2 chr9 107124781 107124886 -16951286 + B1_Mur2 SINE Alu 13 119 -1 2 1402 1169 260 113 57 chr9 107124889 107125554 -16950618 + L1M3de LINE L1 2792 3493 -2940 2 1402 744 291 76 30 chr9 107125559 107125796 -16950376 + B4A SINE B4 3 250 -42 2 1402 399 282 131 6 chr9 107125856 107126031 -16950141 + L1ME4a LINE L1 5902 6098 -26 2 1402 214 149 21 21 chr9 107126500 107126548 -16949624 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 1402 614 217 229 0 chr9 107126897 107127063 -16949109 + RMER1B Other Other 102 305 -761 2 1402 2914 189 55 35 chr9 107127073 107127638 -16948534 + RMER1B Other Other 479 1054 -12 2 1402 207 0 0 0 chr9 107127643 107127666 -16948506 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2 1402 1152 75 7 0 chr9 107128757 107128903 -16947269 + B1_Mus1 SINE Alu 1 147 -1 2 1402 573 137 84 0 chr9 107128929 107129024 -16947148 + PB1D9 SINE Alu 11 113 -7 2 1402 872 242 77 10 chr9 107129079 107129275 -16946897 - B3 SINE B2 0 216 8 2 1402 193 29 0 56 chr9 107129295 107129331 -16946841 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2 1402 518 274 8 41 chr9 107129418 107129540 -16946632 - RSINE1 SINE B4 -3 162 45 2 1402 715 208 207 6 chr9 107129583 107129752 -16946420 + B3 SINE B2 1 203 -13 2 1402 854 162 0 35 chr9 107129875 107130016 -16946156 + B1_Mur3 SINE Alu 1 136 -13 2 1402 645 211 93 42 chr9 107130785 107130978 -16945194 + B3 SINE B2 14 216 0 2 1402 228 163 0 0 chr9 107131267 107131310 -16944862 + CT-rich Low_complexity Low_complexity 3 45 0 2 1402 645 297 7 20 chr9 107131417 107131568 -16944604 + RSINE1 SINE B4 7 155 -10 2 1402 213 288 56 84 chr9 107131421 107131599 -16944573 + B2_Mm2 SINE B2 10 182 -13 2 1402 244 241 138 0 chr9 107131612 107131670 -16944502 + MamRep1161 DNA TcMar 64 129 -828 2 1402 690 197 0 0 chr9 107131927 107132069 -16944103 + GA-rich Low_complexity Low_complexity 3 144 0 2 1402 252 59 0 0 chr9 107133551 107133585 -16942587 + (CCCG)n Simple_repeat Simple_repeat 3 36 0 2 1402 28 29 0 0 chr9 107133839 107133874 -16942298 + GC_rich Low_complexity Low_complexity 1 35 0 2 1402 21 36 0 0 chr9 107133895 107133923 -16942249 + GC_rich Low_complexity Low_complexity 1 28 0 2 1402 21 57 0 0 chr9 107134246 107134281 -16941891 + GC_rich Low_complexity Low_complexity 1 35 0 2 1402 405 0 0 0 chr9 107135209 107135254 -16940918 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1402 336 230 47 37 chr9 107135498 107135609 -16940563 + B1F1 SINE Alu 12 119 -1 2 1402 195 258 105 63 chr9 107138723 107138818 -16937354 + MIRm SINE MIR 163 261 -15 2 1402 465 327 154 43 chr9 107139449 107139871 -16936301 - L2c LINE L2 -3 3384 2916 2 1402 213 65 0 0 chr9 107140422 107140453 -16935719 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1402 440 304 118 10 chr9 107140826 107141029 -16935143 + MIRb SINE MIR 23 247 -21 2 1402 231 167 0 0 chr9 107142275 107142317 -16933855 + GA-rich Low_complexity Low_complexity 2 43 0 2 1402 1070 128 0 11 chr9 107142317 107142499 -16933673 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1402 1224 48 0 7 chr9 107142972 107143107 -16933065 + B1_Mus1 SINE Alu 3 137 -11 2 1402 210 37 0 0 chr9 107143107 107143134 -16933038 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1402 1224 48 0 7 chr9 107143134 107143145 -16933027 + B1_Mus1 SINE Alu 138 148 0 2 1402 621 72 0 0 chr9 107144249 107144332 -16931840 + (CCA)n Simple_repeat Simple_repeat 2 84 0 2 1402 246 288 67 67 chr9 107144380 107144544 -16931628 + L2 LINE L2 1948 2111 -1308 2 1402 1039 259 47 24 chr9 107144591 107144887 -16931285 + MER2 DNA MER2_type 35 337 -8 2 1402 326 253 21 21 chr9 107144958 107145051 -16931121 + MLT2B3 LTR ERVL 1 93 -461 2 1402 347 221 11 37 chr9 107145109 107145197 -16930975 + MTE2b LTR MaLR 263 355 -24 2 1402 1700 202 70 25 chr9 107145247 107145603 -16930569 - ORR1D1 LTR MaLR 0 374 3 2 1402 442 248 49 10 chr9 107146169 107146271 -16929901 + PB1D10 SINE Alu 12 117 0 2 1402 357 274 72 176 chr9 107146287 107146391 -16929781 + L1ME2 LINE L1 4173 4262 -1884 2 1402 1164 88 0 7 chr9 107146391 107146539 -16929633 - B1_Mus2 SINE Alu 0 147 1 2 1402 357 274 72 176 chr9 107146539 107146579 -16929593 + L1ME2 LINE L1 4263 4287 -1859 2 1402 1205 61 0 0 chr9 107146579 107146726 -16929446 + B1_Mus2 SINE Alu 1 147 0 2 1402 357 274 72 176 chr9 107146726 107146859 -16929313 + L1ME2 LINE L1 4288 4422 -1724 2 1402 427 259 120 54 chr9 107146901 107147085 -16929087 + L1ME2 LINE L1 5881 6076 -88 2 1402 748 129 0 75 chr9 107147196 107147330 -16928842 - B1_Mus1 SINE Alu 0 148 25 2 1402 1189 82 0 0 chr9 107147343 107147490 -16928682 + B1_Mus1 SINE Alu 2 148 0 2 1402 22 0 0 0 chr9 107147494 107147516 -16928656 + AT_rich Low_complexity Low_complexity 1 22 0 2 1402 1411 93 0 30 chr9 107147878 107148078 -16928094 + B2_Mm2 SINE B2 2 195 0 2 1402 1114 56 0 53 chr9 107148080 107148230 -16927942 + B1_Mus2 SINE Alu 1 142 -5 2 1402 305 28 0 0 chr9 107148498 107148534 -16927638 + U2 snRNA snRNA 1 36 -152 2 1402 251 315 93 0 chr9 107148574 107148682 -16927490 - MIRb SINE MIR -62 206 89 2 1402 825 178 14 14 chr9 107148687 107148835 -16927337 + B1_Mur4 SINE Alu 2 149 -1 2 1402 992 246 128 3 chr9 107149244 107149526 -16926646 - MTE2b LTR MaLR -62 317 1 2 1402 1249 41 7 0 chr9 107150243 107150390 -16925782 - B1_Mus1 SINE Alu 0 148 1 2 1402 1399 74 0 0 chr9 107150397 107150572 -16925600 - B2_Mm2 SINE B2 -19 176 2 2 1402 777 230 46 6 chr9 107150602 107150777 -16925395 + B4A SINE B4 2 183 -109 2 1402 695 219 0 35 chr9 107151012 107151154 -16925018 + B1_Mur1 SINE Alu 3 139 -10 2 1402 194 319 134 0 chr9 107151321 107151440 -16924732 + L2b LINE L2 3028 3162 -213 2 1402 221 344 127 19 chr9 107152941 107153098 -16923074 + MIRb SINE MIR 15 188 -80 2 1402 250 272 145 26 chr9 107153119 107153236 -16922936 - Charlie15a DNA MER1_type 0 224 94 2 1402 198 369 60 60 chr9 107153549 107153716 -16922456 + L2c LINE L2 3038 3204 -183 2 1402 211 296 148 0 chr9 107154111 107154199 -16921973 - MIRb SINE MIR -81 187 87 2 1402 777 22 0 0 chr9 107154787 107154878 -16921294 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 1402 188 389 26 9 chr9 107155769 107155883 -16920289 + L2c LINE L2 3289 3404 -22 2 1402 1273 96 11 11 chr9 107156284 107156464 -16919708 + B2_Mm2 SINE B2 2 181 -14 2 1402 215 262 39 68 chr9 107156544 107156662 -16919510 - MIRc SINE MIR -145 123 5 2 1402 441 0 0 0 chr9 107158839 107158888 -16917284 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1402 186 192 192 0 chr9 107159553 107159626 -16916546 - MIRc SINE MIR -120 148 62 2 1402 342 267 87 51 chr9 107159881 107160019 -16916153 + MLT1F2 LTR MaLR 398 552 -8 2 1402 638 148 34 19 chr9 107160121 107160255 -16915917 - B1_Mur3 SINE Alu -1 148 14 2 1402 274 268 162 20 chr9 107160255 107160354 -16915818 - MIRb SINE MIR -119 149 37 2 1402 297 220 47 76 chr9 107160355 107160527 -16915645 + RMER17C LTR ERVK 1 167 -243 2 1402 249 108 0 0 chr9 107161408 107161445 -16914727 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1402 344 280 29 20 chr9 107163815 107163917 -16912255 + MIRb SINE MIR 96 198 -70 2 1402 249 305 122 17 chr9 107165149 107165329 -16910843 + MIR SINE MIR 48 246 -16 2 1402 388 277 20 0 chr9 107165338 107165439 -16910733 - MIRc SINE MIR -118 150 48 2 1402 211 303 66 22 chr9 107166147 107166238 -16909934 - MIRc SINE MIR -146 122 28 2 1402 595 220 0 9 chr9 107166814 107166924 -16909248 + RSINE1 SINE B4 2 110 -55 2 1402 189 0 0 0 chr9 107166924 107166945 -16909227 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 1402 23 0 0 0 chr9 107166945 107166968 -16909204 + AT_rich Low_complexity Low_complexity 1 23 0 2 1402 204 281 122 43 chr9 107167159 107167307 -16908865 + MIRb SINE MIR 23 173 -89 3 1402 238 306 0 0 chr9 107168931 107168993 -16907179 - B4A SINE B4 -6 286 225 3 1402 1207 68 0 0 chr9 107169011 107169157 -16907015 + B1_Mus2 SINE Alu 2 147 0 3 1402 195 42 0 0 chr9 107169157 107169181 -16906991 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1402 672 211 7 29 chr9 107169184 107169321 -16906851 - B3 SINE B2 -4 212 79 3 1402 662 91 10 0 chr9 107169331 107169430 -16906742 + (TCTA)n Simple_repeat Simple_repeat 4 103 0 3 1402 761 271 18 23 chr9 107169430 107169649 -16906523 - B4A SINE B4 -74 218 1 3 1402 216 0 0 0 chr9 107169656 107169680 -16906492 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 3 1402 840 250 14 8 chr9 107169683 107169873 -16906299 - ID_B1 SINE B4 -39 253 61 3 1402 288 83 32 32 chr9 107169958 107170020 -16906152 + (TCC)n Simple_repeat Simple_repeat 1 62 0 3 1402 503 264 14 0 chr9 107170136 107170276 -16905896 - L1ME2 LINE L1 0 6164 6023 3 1402 182 349 12 12 chr9 107170418 107170502 -16905670 - MIRc SINE MIR -97 171 88 3 1402 273 270 26 26 chr9 107170685 107170761 -16905411 - RLTR6-int LTR ERV1 -6877 901 826 3 1402 1170 76 0 0 chr9 107170884 107171042 -16905130 + (TTTC)n Simple_repeat Simple_repeat 4 161 0 3 1402 1345 110 16 0 chr9 107171043 107171225 -16904947 - B2_Mm2 SINE B2 -8 187 3 3 1402 1192 75 0 0 chr9 107172027 107172174 -16903998 + B1_Mus1 SINE Alu 2 148 0 3 1402 180 0 0 0 chr9 107172181 107172201 -16903971 + (CCA)n Simple_repeat Simple_repeat 1 20 0 3 1402 964 143 20 0 chr9 107172850 107172997 -16903175 + B1_Mur4 SINE Alu 1 150 0 3 1402 206 286 63 0 chr9 107173080 107173143 -16903029 + MIRm SINE MIR 117 183 -93 3 1402 471 305 7 13 chr9 107173887 107174040 -16902132 - MIRc SINE MIR -20 248 97 3 1402 1423 89 5 5 chr9 107176057 107176250 -16899922 + B2_Mm1a SINE B2 1 193 0 3 1402 423 270 0 0 chr9 107176477 107176566 -16899606 - PB1D10 SINE Alu -28 89 1 3 1402 600 277 6 30 chr9 107176826 107176990 -16899182 - RSINE1 SINE B4 -1 164 5 3 1402 326 265 48 0 chr9 107177553 107177636 -16898536 - MIRc SINE MIR -147 121 35 3 1402 519 45 0 0 chr9 107177636 107177702 -16898470 + (CATA)n Simple_repeat Simple_repeat 3 68 0 3 1402 270 0 0 0 chr9 107177745 107177775 -16898397 + (CATA)n Simple_repeat Simple_repeat 3 32 0 3 1402 196 348 78 0 chr9 107177961 107178093 -16898079 - MIRc SINE MIR -38 230 78 3 1402 266 0 29 0 chr9 107179266 107179300 -16896872 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1402 399 268 9 35 chr9 107179320 107179436 -16896736 + B3 SINE B2 104 216 0 3 1402 1455 75 11 5 chr9 107179458 107179646 -16896526 + B2_Mm2 SINE B2 2 190 -5 3 1402 912 200 109 10 chr9 107180246 107180438 -16895734 + B3 SINE B2 1 211 -5 3 1402 270 281 21 21 chr9 107181406 107181515 -16894657 + MIR SINE MIR 45 156 -112 3 1402 183 80 0 0 chr9 107182303 107182328 -16893844 + (CCCCAG)n Simple_repeat Simple_repeat 2 26 0 3 1402 2368 86 9 60 chr9 107183470 107183817 -16892355 - ORR1A4 LTR MaLR 0 329 1 3 1402 324 298 61 9 chr9 107184126 107184241 -16891931 + MIRb SINE MIR 40 160 -102 3 1402 756 211 60 60 chr9 107184343 107184525 -16891647 + B3A SINE B2 1 182 -16 3 1402 427 216 117 22 chr9 107184538 107184666 -16891506 + RSINE1 SINE B4 14 155 -10 3 1402 600 14 0 0 chr9 107184666 107184735 -16891437 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1402 1190 75 0 0 chr9 107184783 107184929 -16891243 - B1_Mus1 SINE Alu 0 148 3 3 1402 1446 69 16 0 chr9 107185091 107185280 -16890892 - B2_Mm2 SINE B2 -1 194 3 3 1402 1823 223 124 47 chr9 107185380 107185930 -16890242 + RCHARR1 DNA MER1_type 16 607 -367 3 1402 1144 89 0 0 chr9 107185967 107186113 -16890059 + B1_Mm SINE Alu 2 147 0 3 1402 1359 90 6 0 chr9 107186125 107186302 -16889870 - B2_Mm1a SINE B2 -14 179 2 3 1402 805 222 115 11 chr9 107186306 107186348 -16889824 - B3 SINE B2 -4 212 163 3 1402 504 0 0 0 chr9 107186348 107186404 -16889768 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1402 805 222 115 11 chr9 107186404 107186552 -16889620 - B3 SINE B2 -54 162 2 3 1402 527 246 8 0 chr9 107186554 107186672 -16889500 - PB1D9 SINE Alu 0 120 2 3 1402 787 231 78 182 chr9 107186674 107186777 -16889395 + RCHARR1 DNA MER1_type 603 725 -249 3 1402 1223 68 0 0 chr9 107186777 107186924 -16889248 + B1_Mus2 SINE Alu 1 147 0 3 1402 787 231 78 182 chr9 107186924 107187233 -16888939 + RCHARR1 DNA MER1_type 726 972 -2 3 1402 615 121 0 0 chr9 107187655 107187754 -16888418 + (TCTCCC)n Simple_repeat Simple_repeat 6 104 0 3 1402 387 0 0 0 chr9 107187754 107187797 -16888375 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1402 203 274 0 0 chr9 107188213 107188264 -16887908 - L2c LINE L2 -231 3156 3106 3 1402 261 294 29 0 chr9 107192648 107192716 -16883456 + RMER30 DNA MER1_type 133 202 0 3 1402 437 275 55 0 chr9 107192827 107192936 -16883236 + PB1D10 SINE Alu 3 117 0 3 1402 771 169 81 0 chr9 107192938 107193074 -16883098 + B1_Mur3 SINE Alu 1 147 -2 3 1402 1250 48 0 0 chr9 107193101 107193248 -16882924 - B1_Mus2 SINE Alu 0 147 1 3 1402 276 315 9 9 chr9 107194025 107194134 -16882038 + (CA)n Simple_repeat Simple_repeat 1 109 0 3 1402 465 19 0 0 chr9 107194388 107194442 -16881730 + (CATA)n Simple_repeat Simple_repeat 2 55 0 3 1402 651 231 88 6 chr9 107194442 107194612 -16881560 + B3A SINE B2 15 198 0 3 1402 519 250 0 0 chr9 107195735 107195843 -16880329 - ID_B1 SINE B4 -29 195 88 3 1402 357 342 6 75 chr9 107195959 107196133 -16880039 + RSINE1 SINE B4 4 165 0 3 1402 474 295 14 61 chr9 107197158 107197306 -16878866 + RSINE1 SINE B4 2 142 -23 3 1402 328 88 35 0 chr9 107197321 107197378 -16878794 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1402 1058 98 0 27 chr9 107197397 107197544 -16878628 + B1_Mur4 SINE Alu 2 144 -6 3 1402 1350 0 0 0 chr9 107197544 107197694 -16878478 + (GGAAA)n Simple_repeat Simple_repeat 3 152 0 3 1402 268 254 108 2 chr9 107198258 107198382 -16877790 + B1_Mm SINE Alu 1 148 -1 3 1402 459 0 0 0 chr9 107200057 107200108 -16876064 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1402 558 329 27 68 chr9 107201947 107202054 -16874118 + ID_B1 SINE B4 11 223 -1 3 1402 694 183 0 0 chr9 107202054 107202169 -16874003 + B1_Mur1 SINE Alu 34 148 -1 3 1402 314 164 119 0 chr9 107205200 107205267 -16870905 + B3A SINE B2 1 75 -123 3 1402 287 384 35 63 chr9 107206362 107206729 -16869443 - L2b LINE L2 -32 3343 2987 3 1402 1229 135 8 156 chr9 107207028 107207178 -16868994 + URR1B DNA MER1_type 2 138 -87 3 1402 1248 48 0 0 chr9 107207178 107207324 -16868848 + B1_Mm SINE Alu 2 147 0 3 1402 1229 135 8 156 chr9 107207324 107207436 -16868736 + URR1B DNA MER1_type 139 225 0 3 1402 736 160 0 48 chr9 107208844 107209571 -16866601 + (TG)n Simple_repeat Simple_repeat 1 691 0 3 1402 205 186 47 0 chr9 107211278 107211321 -16864851 + L2c LINE L2 3116 3160 -227 3 1402 194 301 82 24 chr9 107212250 107212335 -16863837 + MIR SINE MIR 57 146 -62 3 1402 353 280 164 65 chr9 107212530 107212805 -16863367 - Zaphod DNA Tip100 -25 4006 3705 3 1402 952 53 0 8 chr9 107212798 107212930 -16863242 - B1_Mus1 SINE Alu -17 131 1 3 1402 225 267 0 8 chr9 107212822 107212943 -16863229 - ORR1B1-int LTR MaLR -755 754 635 3 1402 268 286 65 11 chr9 107213140 107213232 -16862940 - B1_Mm SINE Alu -50 97 1 3 1402 526 244 90 22 chr9 107213232 107213293 -16862879 - ID SINE ID -143 81 17 3 1402 237 293 29 48 chr9 107213294 107213398 -16862774 - LTR16C LTR ERVL -3 486 385 3 1402 475 246 18 0 chr9 107213502 107213612 -16862560 + LTR40a LTR ERVL 405 516 -3 3 1402 378 226 0 0 chr9 107213614 107213720 -16862452 + (TG)n Simple_repeat Simple_repeat 1 106 0 3 1402 909 265 84 25 chr9 107213720 107213995 -16862177 - B4 SINE B4 0 292 2 3 1402 197 347 19 67 chr9 107214258 107214363 -16861809 + MIR3 SINE MIR 60 159 -49 3 1402 796 173 6 6 chr9 107214426 107214606 -16861566 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1402 224 350 49 49 chr9 107214916 107215039 -16861133 + L2c LINE L2 3264 3386 -1 3 1402 396 59 0 0 chr9 107215752 107215803 -16860369 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1402 200 192 12 49 chr9 107215912 107215994 -16860178 + CT-rich Low_complexity Low_complexity 1 79 0 3 1402 871 156 243 23 chr9 107216016 107216193 -16859979 + B3 SINE B2 1 216 0 3 1402 301 267 44 22 chr9 107216200 107216386 -16859786 + L1MA4 LINE L1 5782 6010 -173 3 1402 619 191 111 0 chr9 107216553 107216679 -16859493 + B1_Mus2 SINE Alu 3 142 -5 3 1402 201 147 0 0 chr9 107216687 107216721 -16859451 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 3 175 386 290 31 39 chr9 107216795 107216924 -16859248 + RSINE1 SINE B4 4 131 -34 3 1403 727 223 16 179 chr9 107217208 107217465 -16858707 + B3 SINE B2 2 216 0 3 1403 21 0 0 0 chr9 107217471 107217492 -16858680 + AT_rich Low_complexity Low_complexity 1 21 0 3 1403 848 9 0 0 chr9 107217615 107217720 -16858452 - B1_Mm SINE Alu -7 140 36 3 1403 265 162 71 119 chr9 107217651 107217735 -16858437 - RLTR25B LTR ERVK -519 509 430 3 1403 816 172 14 14 chr9 107217823 107217970 -16858202 + B1_Mur1 SINE Alu 3 149 0 3 1403 188 259 74 0 chr9 107218463 107218517 -16857655 + MIRm SINE MIR 49 106 -170 3 1403 881 177 105 70 chr9 107219382 107219582 -16856590 + B3 SINE B2 2 208 -8 3 1403 555 203 413 0 chr9 107219832 107219975 -16856197 + B3 SINE B2 1 202 -14 3 1403 302 164 0 0 chr9 107221179 107221239 -16854933 + MTD LTR MaLR 254 313 -108 3 1403 3745 106 25 108 chr9 107221239 107222002 -16854170 - RMER6A LTR ERVK 0 756 57 4 1403 651 157 0 34 chr9 107222020 107222139 -16854033 + MTD LTR MaLR 305 419 0 3 1403 1207 114 0 5 chr9 107222392 107222577 -16853595 - URR1B DNA MER1_type -7 218 35 4 1403 25 31 0 0 chr9 107222855 107222887 -16853285 + AT_rich Low_complexity Low_complexity 1 32 0 4 1403 594 76 26 13 chr9 107222889 107222992 -16853180 - B1_Mus2 SINE Alu -5 142 13 4 1403 1212 276 74 16 chr9 107223806 107224171 -16852001 - MTD LTR MaLR -28 391 6 4 1403 859 35 9 0 chr9 107224347 107224461 -16851711 - B1_Mm SINE Alu 0 147 33 4 1403 180 0 0 0 chr9 107224600 107224620 -16851552 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1403 295 222 0 0 chr9 107224682 107224745 -16851427 - MLT1D LTR MaLR 0 505 443 4 1403 722 166 101 21 chr9 107224748 107224923 -16851249 + B3 SINE B2 1 187 -6 4 1403 388 318 222 0 chr9 107224965 107225204 -16850968 - MLT1D LTR MaLR -125 380 89 4 1403 677 257 117 0 chr9 107225196 107225399 -16850773 + B4A SINE B4 5 232 -60 4 1403 1309 58 0 0 chr9 107225399 107225571 -16850601 + B2_Mm2 SINE B2 1 172 -23 4 1403 357 63 316 18 chr9 107225589 107225703 -16850469 + B2_Mm2 SINE B2 47 194 -1 4 1403 280 281 79 0 chr9 107225759 107225873 -16850299 - MLT1D LTR MaLR -376 129 7 4 1403 206 338 28 0 chr9 107227414 107227485 -16848687 - MIRb SINE MIR -156 112 40 4 1403 4288 142 50 18 chr9 107228994 107229776 -16846396 - RMER13B LTR ERVK -101 807 1 4 1403 195 366 61 0 chr9 107231278 107231360 -16844812 + MIR SINE MIR 58 144 -64 4 1403 208 330 52 0 chr9 107231402 107231499 -16844673 - MIRb SINE MIR -74 194 93 4 1403 254 306 96 40 chr9 107231926 107232111 -16844061 + L2b LINE L2 3041 3227 -160 4 1403 1140 88 0 13 chr9 107232598 107232738 -16843434 + B1_Mus1 SINE Alu 2 140 -8 4 1403 225 0 0 0 chr9 107232738 107232763 -16843409 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 1403 687 128 0 0 chr9 107232790 107232899 -16843273 + (GGAGA)n Simple_repeat Simple_repeat 2 110 0 4 1403 217 293 0 17 chr9 107234049 107234108 -16842064 + MIR SINE MIR 88 145 -63 4 1403 305 200 57 0 chr9 107234401 107234471 -16841701 + ID4 SINE ID 1 74 -9 4 1403 909 206 92 5 chr9 107237463 107237658 -16838514 - B3 SINE B2 0 216 5 4 1403 197 238 143 0 chr9 107239089 107239152 -16837020 + L2c LINE L2 3316 3387 0 4 1403 207 349 0 11 chr9 107240309 107240396 -16835776 - MIRb SINE MIR -142 126 41 4 1403 210 379 32 8 chr9 107241220 107241345 -16834827 + MIR3 SINE MIR 15 142 -66 4 1403 405 284 0 9 chr9 107241349 107241459 -16834713 + PB1D10 SINE Alu 1 109 -8 4 1403 414 214 7 0 chr9 107241481 107241569 -16834603 + B3A SINE B2 6 97 -119 4 1403 21 71 0 0 chr9 107241582 107241624 -16834548 + AT_rich Low_complexity Low_complexity 1 42 0 4 1403 509 259 215 17 chr9 107241633 107241810 -16834362 + ID_B1 SINE B4 13 224 0 4 1403 221 260 88 150 chr9 107241844 107241886 -16834286 + PB1 SINE Alu 1 42 -85 4 1403 1207 208 0 14 chr9 107241886 107242105 -16834067 + B3 SINE B2 1 216 0 4 1403 389 219 91 10 chr9 107242105 107242199 -16833973 + B1F SINE Alu 27 122 -27 4 1403 266 253 92 31 chr9 107242111 107242209 -16833963 + ID_B1 SINE B4 108 211 -13 4 1403 318 320 50 44 chr9 107243270 107243430 -16832742 - MIRc SINE MIR -65 203 43 4 1403 251 283 130 0 chr9 107244083 107244175 -16831997 - MIR SINE MIR -75 187 84 4 1403 290 333 0 0 chr9 107245805 107245880 -16830292 + ID4_ SINE ID 1 75 -8 4 1403 209 33 33 0 chr9 107247037 107247067 -16829105 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 4 1403 895 131 43 14 chr9 107247067 107247197 -16828975 - B1_Mur2 SINE Alu -13 136 2 4 1403 739 193 224 17 chr9 107247237 107247416 -16828756 + B3 SINE B2 1 216 0 4 1403 1768 58 0 4 chr9 107247561 107247787 -16828385 - L1Md_F2 LINE L1 0 6582 6358 4 1403 358 241 12 0 chr9 107248230 107248313 -16827859 + B1F SINE Alu 51 134 -15 4 1403 180 0 0 0 chr9 107248691 107248711 -16827461 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 4 1403 360 0 0 0 chr9 107249070 107249110 -16827062 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 4 1403 239 282 71 12 chr9 107249485 107249610 -16826562 + MIRc SINE MIR 37 170 -92 4 1403 612 0 0 0 chr9 107250796 107250864 -16825308 + (TTTTA)n Simple_repeat Simple_repeat 2 69 0 4 1403 522 153 243 0 chr9 107250864 107250975 -16825197 - B1_Mur1 SINE Alu -11 138 1 4 1403 901 112 23 17 chr9 107253330 107253503 -16822669 + CT-rich Low_complexity Low_complexity 2 175 0 4 1403 324 0 0 0 chr9 107254024 107254060 -16822112 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1403 351 0 0 0 chr9 107254060 107254098 -16822074 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1403 497 251 143 60 chr9 107254556 107254738 -16821434 + B3A SINE B2 2 198 0 4 1403 2065 185 40 15 chr9 107255219 107255620 -16820552 - MTD LTR MaLR -8 411 1 4 1403 252 0 0 0 chr9 107256457 107256485 -16819687 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1403 372 289 8 42 chr9 107257610 107257729 -16818443 + PB1D10 SINE Alu 1 115 -2 4 1403 872 76 0 22 chr9 107258640 107258775 -16817397 + (TCTCC)n Simple_repeat Simple_repeat 4 135 0 4 1403 1713 31 0 0 chr9 107259063 107259255 -16816917 + B2_Mm1t SINE B2 1 192 -1 4 1403 240 331 173 0 chr9 107259381 107259520 -16816652 - MIR SINE MIR -72 190 28 4 1403 1747 166 164 11 chr9 107261133 107261486 -16814686 + MTB_Mm LTR MaLR 1 407 0 4 1403 250 314 132 0 chr9 107261853 107261974 -16814198 + MIR SINE MIR 116 252 -10 4 1403 2144 73 89 3 chr9 107262262 107262565 -16813607 + ORR1A4 LTR MaLR 1 329 0 4 1403 1143 150 21 0 chr9 107264679 107264872 -16811300 + URR1A DNA MER1_type 29 225 -1 4 1403 481 314 71 18 chr9 107264872 107264949 -16811223 - CYRA11_Mm Unknown Y-chromosome -443 174 86 4 1403 861 157 0 27 chr9 107265015 107265199 -16810973 + GA-rich Low_complexity Low_complexity 1 179 0 4 1403 439 259 131 61 chr9 107265477 107265691 -16810481 - B4A SINE B4 -62 230 2 4 1403 527 270 67 6 chr9 107265871 107266050 -16810122 - L1MC LINE L1 -2144 5738 5549 4 1403 234 192 0 0 chr9 107266449 107266501 -16809671 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1403 1178 65 18 6 chr9 107266532 107266545 -16809627 - B2_Mm2 SINE B2 -1 194 182 4 1403 198 0 0 0 chr9 107266545 107266567 -16809605 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 1403 1178 65 18 6 chr9 107266567 107266724 -16809448 - B2_Mm2 SINE B2 -14 181 23 4 1403 1278 28 0 0 chr9 107266832 107266975 -16809197 - B1_Mus1 SINE Alu -5 143 1 4 1403 1285 276 73 39 chr9 107266978 107267196 -16808976 - Lx7 LINE L1 0 7696 7353 4 1403 195 42 0 0 chr9 107267196 107267220 -16808952 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 4 1403 1285 253 81 34 chr9 107267220 107267598 -16808574 - Lx7 LINE L1 -344 7352 6948 4 1403 1931 158 84 22 chr9 107267652 107268008 -16808164 + ORR1C1 LTR MaLR 1 378 0 4 1403 916 269 9 5 chr9 107268010 107268230 -16807942 - B4A SINE B4 -63 229 9 4 1403 1023 283 109 18 chr9 107268238 107268576 -16807596 + MTEa LTR MaLR 4 372 -7 4 1403 222 62 0 0 chr9 107268579 107268611 -16807561 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1403 624 38 0 0 chr9 107269247 107269326 -16806846 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1403 2723 110 38 15 chr9 107271260 107271658 -16804514 - MTB_Mm LTR MaLR 0 407 1 4 1403 227 250 7 35 chr9 107272328 107272473 -16803699 + CT-rich Low_complexity Low_complexity 2 142 0 4 1403 1206 36 0 0 chr9 107273636 107273773 -16802399 - B1_Mus1 SINE Alu -10 138 2 4 1403 441 0 0 0 chr9 107274645 107274694 -16801478 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1403 1453 83 16 10 chr9 107275345 107275539 -16800633 - B2_Mm2 SINE B2 0 195 1 4 1403 369 0 0 0 chr9 107275745 107275786 -16800386 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1403 356 307 47 2 chr9 107276312 107276441 -16799731 + PB1D9 SINE Alu 9 148 -1 4 1403 200 196 21 21 chr9 107279103 107279150 -16797022 - MIR SINE MIR -64 144 98 4 1403 457 225 0 11 chr9 107279356 107279446 -16796726 - PB1D7 SINE Alu -1 119 31 4 1403 904 63 0 8 chr9 107279705 107279833 -16796339 + B1_Mm SINE Alu 21 147 0 4 1403 300 149 32 0 chr9 107279835 107279929 -16796243 + A-rich Low_complexity Low_complexity 2 98 0 4 1403 268 292 67 34 chr9 107281944 107282075 -16794097 - MIR SINE MIR -86 182 42 4 1403 812 164 64 0 chr9 107282227 107282367 -16793805 + B1_Mur4 SINE Alu 1 149 -1 4 1403 732 161 8 8 chr9 107283565 107283696 -16792476 + URR1B DNA MER1_type 94 224 -1 4 1403 392 293 29 46 chr9 107283696 107283740 -16792432 - CYRA11_Mm Unknown Y-chromosome -314 303 132 4 1403 1221 57 0 0 chr9 107285779 107285937 -16790235 + (CTTTG)n Simple_repeat Simple_repeat 2 159 0 4 1403 839 117 0 8 chr9 107285949 107286078 -16790094 - B1_Mur4 SINE Alu -22 128 1 4 1403 297 0 0 0 chr9 107286344 107286377 -16789795 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1403 395 285 57 8 chr9 107286573 107286697 -16789475 - MIRc SINE MIR -90 178 49 4 1403 1019 313 17 36 chr9 107289210 107289568 -16786604 + MLT1I LTR MaLR 61 411 0 4 1403 286 187 27 0 chr9 107291422 107291496 -16784676 - ID4 SINE ID -74 78 1 4 1403 333 239 15 0 chr9 107292043 107292110 -16784062 + G-rich Low_complexity Low_complexity 45 112 0 4 1403 210 288 23 31 chr9 107294038 107294137 -16782035 + MIRb SINE MIR 90 193 -75 4 1403 297 0 0 0 chr9 107294395 107294428 -16781744 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1403 511 178 44 0 chr9 107294489 107294579 -16781593 - Lx7 LINE L1 -453 7243 7150 4 1403 768 192 7 7 chr9 107294774 107294921 -16781251 - Lx7 LINE L1 -559 7137 6991 4 1403 995 135 0 26 chr9 107296348 107296500 -16779672 + B1_Mus1 SINE Alu 1 148 0 5 1403 599 212 98 8 chr9 107296915 107297048 -16779124 - B1_Mur1 SINE Alu 0 149 5 5 1403 875 10 10 0 chr9 107297891 107297995 -16778177 + (TC)n Simple_repeat Simple_repeat 1 105 0 5 1403 225 0 0 0 chr9 107297995 107298020 -16778152 + (TGG)n Simple_repeat Simple_repeat 2 26 0 5 1403 203 226 73 36 chr9 107298181 107298236 -16777936 + MIR SINE MIR 90 146 -62 5 1403 270 356 120 14 chr9 107299106 107299314 -16776858 - MIRb SINE MIR -16 252 23 5 1403 26 82 0 0 chr9 107302033 107302094 -16774078 + GC_rich Low_complexity Low_complexity 1 61 0 5 1403 189 74 0 0 chr9 107302099 107302126 -16774046 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 5 1403 23 0 0 0 chr9 107302314 107302337 -16773835 + GC_rich Low_complexity Low_complexity 1 23 0 5 1403 221 314 0 63 chr9 107302408 107302580 -16773592 + C-rich Low_complexity Low_complexity 1 161 0 5 1403 423 0 0 0 chr9 107306426 107306473 -16769699 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 1403 414 0 0 0 chr9 107307167 107307213 -16768959 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1403 21 36 0 0 chr9 107307823 107307851 -16768321 + AT_rich Low_complexity Low_complexity 1 28 0 5 1403 193 93 45 23 chr9 107308386 107308430 -16767742 + MIR SINE MIR 86 130 -78 5 1403 234 0 0 0 chr9 107309421 107309447 -16766725 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1403 1060 268 93 32 chr9 107311700 107312141 -16764031 - MLT1L LTR MaLR -148 447 1 5 1403 188 34 0 33 chr9 107313257 107313287 -16762885 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 5 1403 1022 206 41 32 chr9 107314490 107314711 -16761461 - ID_B1 SINE B4 0 224 2 5 1403 255 182 36 18 chr9 107315028 107315084 -16761088 - L2b LINE L2 -88 3287 3231 5 1403 806 270 10 5 chr9 107316107 107316304 -16759868 + ID_B1 SINE B4 3 200 -24 5 1403 408 280 39 16 chr9 107317674 107317801 -16758371 + MIR SINE MIR 20 149 -113 5 1403 492 32 0 0 chr9 107318101 107318163 -16758009 + (TGG)n Simple_repeat Simple_repeat 1 62 0 5 1403 387 0 0 0 chr9 107318163 107318206 -16757966 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1403 272 292 65 59 chr9 107319213 107319366 -16756806 - MIR3 SINE MIR -8 200 47 5 1403 574 310 110 60 chr9 107320074 107320575 -16755597 - L2 LINE L2 -519 2900 2375 5 1403 282 352 6 0 chr9 107321135 107321294 -16754878 + (CCCCAA)n Simple_repeat Simple_repeat 4 163 0 5 1403 183 204 0 0 chr9 107324012 107324056 -16752116 + C-rich Low_complexity Low_complexity 4 47 0 5 1403 309 296 0 43 chr9 107324491 107324583 -16751589 - PB1D10 SINE Alu -29 88 1 5 1403 392 216 240 31 chr9 107324583 107324632 -16751540 - ID SINE ID -147 77 2 5 1403 231 348 56 0 chr9 107324651 107324740 -16751432 - MIRc SINE MIR -104 164 71 5 1403 671 258 96 38 chr9 107325994 107326179 -16749993 + Lx8 LINE L1 7170 7375 -98 5 1403 523 228 138 0 chr9 107326179 107326302 -16749870 + B1_Mur1 SINE Alu 1 140 -9 5 1403 269 51 26 0 chr9 107326303 107326342 -16749830 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 1403 671 251 103 40 chr9 107326342 107326422 -16749750 + Lx8 LINE L1 7376 7468 -5 5 1403 341 300 73 0 chr9 107326472 107326582 -16749590 - MER63A DNA AcHobo -57 153 36 5 1403 534 315 102 19 chr9 107338543 107338799 -16737373 + B4 SINE B4 2 278 -14 5 1403 282 160 0 0 chr9 107338849 107338899 -16737273 + (ATG)n Simple_repeat Simple_repeat 2 51 0 5 1403 400 344 88 85 chr9 107340333 107340756 -16735416 - HAL1 LINE L1 -442 2065 1642 5 1403 922 117 7 0 chr9 107341060 107341197 -16734975 - B1_Mus2 SINE Alu 0 147 10 5 1403 251 257 19 63 chr9 107341100 107341258 -16734914 - ORR1B1-int LTR MaLR -755 754 604 5 1403 571 247 7 26 chr9 107341197 107341214 -16734958 - ID_B1 SINE B4 0 224 74 5 1403 561 166 16 49 chr9 107341322 107341506 -16734666 + C-rich Low_complexity Low_complexity 3 180 0 5 1403 384 299 86 66 chr9 107341513 107341710 -16734462 - HAL1 LINE L1 -1304 1203 1003 5 1403 1668 261 81 48 chr9 107341932 107342612 -16733560 - L1MC4a LINE L1 -193 7689 6988 5 1403 315 0 0 0 chr9 107342627 107342662 -16733510 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 5 1403 580 153 0 11 chr9 107342662 107342764 -16733408 - B1_Mus2 SINE Alu -11 136 13 5 1403 242 253 9 100 chr9 107342685 107342795 -16733377 - RLTR25B LTR ERVK -520 508 409 5 1403 1013 289 99 11 chr9 107342795 107343075 -16733097 - L1MC4a LINE L1 -906 6976 6668 5 1403 402 21 0 0 chr9 107343075 107343122 -16733050 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1403 1013 289 99 11 chr9 107343122 107343296 -16732876 - L1MC4a LINE L1 -1215 6667 6483 5 1403 951 78 0 0 chr9 107344707 107344836 -16731336 + (TG)n Simple_repeat Simple_repeat 2 130 0 5 1403 240 242 16 0 chr9 107344838 107344900 -16731272 - ID4_ SINE ID -19 64 2 5 1403 195 69 0 0 chr9 107345028 107345057 -16731115 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 5 1403 205 359 11 11 chr9 107345615 107345708 -16730464 + MIRc SINE MIR 113 205 -63 5 1403 450 53 0 0 chr9 107346959 107347016 -16729156 + (TCC)n Simple_repeat Simple_repeat 3 59 0 5 1403 29 47 0 0 chr9 107347075 107347118 -16729054 + AT_rich Low_complexity Low_complexity 1 43 0 5 1403 21 0 0 0 chr9 107347546 107347567 -16728605 + AT_rich Low_complexity Low_complexity 1 21 0 5 1403 213 211 0 19 chr9 107347831 107347884 -16728288 + G-rich Low_complexity Low_complexity 1 52 0 5 1404 402 277 0 10 chr9 107348201 107348303 -16727869 + PB1D10 SINE Alu 10 110 -7 5 1404 475 152 13 0 chr9 107348342 107348421 -16727751 + B1_Mus2 SINE Alu 68 147 0 5 1404 243 294 0 29 chr9 107348430 107348500 -16727672 + ID4 SINE ID 2 69 -14 5 1404 264 122 0 0 chr9 107348529 107348570 -16727602 + (CAT)n Simple_repeat Simple_repeat 1 41 0 5 1404 840 321 55 18 chr9 107349249 107349630 -16726542 - HERV16-int LTR ERVL -4391 605 211 5 1404 308 264 55 0 chr9 107350443 107350534 -16725638 + PB1D10 SINE Alu 22 117 0 5 1404 1085 43 0 0 chr9 107350729 107350870 -16725302 + B2_Mm2 SINE B2 1 141 -54 5 1404 507 17 0 0 chr9 107350884 107350944 -16725228 + (CATA)n Simple_repeat Simple_repeat 3 62 0 5 1404 1172 83 0 0 chr9 107352333 107352478 -16723694 + B1_Mm SINE Alu 2 146 -1 5 1404 657 0 0 0 chr9 107352549 107352622 -16723550 + (GGCTG)n Simple_repeat Simple_repeat 1 73 0 5 1404 423 0 0 0 chr9 107353749 107353796 -16722376 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1404 225 0 0 0 chr9 107356018 107356043 -16720129 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1404 1302 106 27 0 chr9 107356644 107356832 -16719340 - B2_Mm1t SINE B2 0 193 1 5 1404 1151 62 7 20 chr9 107357061 107357210 -16718962 - B1_Mm SINE Alu 0 147 1 5 1404 928 216 57 33 chr9 107357217 107357428 -16718744 - B3 SINE B2 0 216 1 5 1404 187 268 0 0 chr9 107358871 107358912 -16717260 + MIRc SINE MIR 114 154 -114 5 1404 906 168 0 14 chr9 107359982 107360127 -16716045 + B1_Mur3 SINE Alu 1 143 -6 5 1404 1271 184 29 0 chr9 107360267 107360473 -16715699 + B3 SINE B2 5 216 0 5 1404 238 322 8 56 chr9 107360683 107360808 -16715364 - L3 LINE CR1 -116 4373 4255 5 1404 391 245 0 62 chr9 107360960 107361073 -16715099 + PB1D10 SINE Alu 11 116 -1 5 1404 21 36 0 0 chr9 107362379 107362407 -16713765 + AT_rich Low_complexity Low_complexity 1 28 0 5 1404 319 189 0 4 chr9 107362420 107362485 -16713687 - B2_Mm2 SINE B2 -108 108 46 5 1404 1275 107 6 17 chr9 107362488 107362668 -16713504 - B2_Mm1t SINE B2 -14 179 2 5 1404 257 301 27 0 chr9 107363562 107363635 -16712537 + CT-rich Low_complexity Low_complexity 6 80 0 5 1404 806 205 11 55 chr9 107364052 107364233 -16711939 + B4A SINE B4 118 290 -2 5 1404 639 0 0 0 chr9 107366137 107366208 -16709964 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1404 206 250 16 16 chr9 107366524 107366585 -16709587 + GA-rich Low_complexity Low_complexity 2 62 0 5 1404 246 192 0 0 chr9 107368683 107368735 -16707437 + GA-rich Low_complexity Low_complexity 3 54 0 5 1404 1052 247 79 9 chr9 107368736 107369079 -16707093 + L1MB7 LINE L1 5818 6184 0 5 1404 268 342 54 9 chr9 107369626 107369738 -16706434 - PB1D10 SINE Alu 0 117 1 5 1404 232 267 45 34 chr9 107370054 107370175 -16705997 - MIRc SINE MIR -124 152 20 5 1404 221 310 92 0 chr9 107370957 107371044 -16705128 - L2b LINE L2 -13 3362 3268 5 1404 326 261 9 5 chr9 107371084 107371187 -16704985 + PB1 SINE Alu 18 122 -5 5 1404 525 274 14 7 chr9 107372166 107372313 -16703859 - MER20 DNA MER1_type -14 205 58 5 1404 294 29 0 0 chr9 107373293 107373328 -16702844 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1404 234 310 11 22 chr9 107374290 107374379 -16701793 - L2b LINE L2 -208 3167 3080 5 1404 1169 62 7 0 chr9 107374624 107374769 -16701403 - B1_Mus1 SINE Alu -1 147 2 5 1404 513 250 18 0 chr9 107378282 107378394 -16697778 - PB1D10 SINE Alu -3 114 1 5 1404 456 126 0 0 chr9 107379859 107379946 -16696226 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 1404 385 345 0 0 chr9 107380110 107380226 -16695946 + ID_B1 SINE B4 81 196 -28 5 1404 902 241 61 0 chr9 107380252 107380464 -16695708 + B4A SINE B4 1 225 -67 5 1404 1391 95 16 5 chr9 107380844 107381034 -16695138 - B2_Mm2 SINE B2 -2 193 2 5 1404 24 0 0 0 chr9 107383492 107383516 -16692656 + AT_rich Low_complexity Low_complexity 1 24 0 5 1404 203 0 0 36 chr9 107383550 107383578 -16692594 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 5 1404 252 286 43 0 chr9 107384269 107384339 -16691833 + L2b LINE L2 3253 3325 -50 5 1404 1026 216 44 0 chr9 107385347 107385551 -16690621 + B3 SINE B2 1 213 -3 5 1404 716 153 105 15 chr9 107385752 107385885 -16690287 - B1_Mur2 SINE Alu -3 146 2 5 1404 251 226 16 16 chr9 107386401 107386464 -16689708 - MIR SINE MIR -98 164 102 6 1404 351 301 76 7 chr9 107387332 107387476 -16688696 + MIRc SINE MIR 3 156 -112 6 1404 319 351 17 11 chr9 107388215 107388391 -16687781 + (ATGGTG)n Simple_repeat Simple_repeat 2 178 0 6 1404 540 167 0 0 chr9 107390992 107391082 -16685090 + B1_Mus2 SINE Alu 41 130 -17 6 1404 317 270 37 74 chr9 107391130 107391238 -16684934 + PB1 SINE Alu 21 124 -3 6 1404 408 40 0 0 chr9 107391239 107391289 -16684883 + (TTAG)n Simple_repeat Simple_repeat 2 51 0 6 1404 262 188 47 18 chr9 107391723 107391807 -16684365 - MIRm SINE MIR -90 186 95 6 1404 256 48 23 23 chr9 107392392 107392435 -16683737 + (TTAGGG)n Simple_repeat Simple_repeat 3 45 0 6 1404 365 0 22 0 chr9 107392542 107392587 -16683585 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1404 213 204 0 0 chr9 107392832 107392876 -16683296 + CT-rich Low_complexity Low_complexity 3 46 0 6 1404 360 64 0 0 chr9 107392933 107392980 -16683192 + (TCTCCC)n Simple_repeat Simple_repeat 4 50 0 6 1404 272 239 33 0 chr9 107393132 107393224 -16682948 + C-rich Low_complexity Low_complexity 3 97 0 6 1404 184 343 55 18 chr9 107394578 107394688 -16681484 + MIRb SINE MIR 34 147 -121 6 1404 486 0 0 0 chr9 107397192 107397246 -16678926 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1404 421 271 13 14 chr9 107397929 107398104 -16678068 + B4 SINE B4 1 216 -76 6 1404 2418 92 31 0 chr9 107398651 107398968 -16677204 - ORR1A2 LTR MaLR 0 327 1 6 1404 625 265 80 0 chr9 107399871 107400022 -16676150 + RSINE1 SINE B4 3 165 0 6 1404 384 241 188 0 chr9 107401267 107401379 -16674793 + ID_B1 SINE B4 85 217 -7 6 1404 245 220 0 78 chr9 107401390 107401454 -16674718 + B3A SINE B2 3 61 -137 6 1404 467 237 111 35 chr9 107401397 107401541 -16674631 + RSINE1 SINE B4 11 165 0 6 1404 251 245 0 9 chr9 107401553 107401664 -16674508 + (CA)n Simple_repeat Simple_repeat 1 110 0 6 1404 926 185 61 11 chr9 107401681 107401861 -16674311 + B3 SINE B2 28 216 0 6 1404 958 150 6 12 chr9 107401869 107402031 -16674141 + B2_Mm2 SINE B2 1 161 -34 6 1404 597 28 0 0 chr9 107402031 107402102 -16674070 + (TAAA)n Simple_repeat Simple_repeat 3 73 0 6 1404 799 219 49 0 chr9 107402102 107402122 -16674050 + B2_Mm1t SINE B2 172 191 -2 6 1404 235 254 58 22 chr9 107402106 107402136 -16674036 + ORR1B1-int LTR MaLR 613 697 -812 6 1404 262 210 56 90 chr9 107402136 107402225 -16673947 + 4.5SRNA scRNA scRNA 1 86 -8 6 1404 876 126 7 0 chr9 107402147 107402282 -16673890 + B1_Mus1 SINE Alu 13 148 0 6 1404 235 254 58 22 chr9 107402225 107402243 -16673929 + ORR1B1-int LTR MaLR 698 754 -755 6 1404 420 238 0 0 chr9 107402297 107402423 -16673749 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 6 1404 216 0 0 0 chr9 107402925 107402949 -16673223 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1404 600 14 0 0 chr9 107403903 107403972 -16672200 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1404 855 146 34 20 chr9 107405713 107405860 -16670312 - B1_Mur2 SINE Alu 0 149 1 6 1404 207 0 0 0 chr9 107409904 107409927 -16666245 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1404 233 325 17 39 chr9 107416486 107416665 -16659507 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 6 1404 259 357 61 77 chr9 107417951 107418105 -16658067 - MER58B DNA MER1_type -2 339 188 6 1404 927 194 0 0 chr9 107418105 107418249 -16657923 - B1_Mur2 SINE Alu -2 147 4 6 1404 351 263 40 125 chr9 107418249 107418348 -16657824 - MER58B DNA MER1_type -151 190 98 6 1404 820 237 86 0 chr9 107418348 107418534 -16657638 - B3 SINE B2 -14 202 1 6 1404 351 259 39 127 chr9 107418534 107418549 -16657623 - MER58B DNA MER1_type -241 100 88 6 1404 935 160 7 0 chr9 107418549 107418693 -16657479 + B1_Mus1 SINE Alu 3 147 -1 6 1404 351 259 39 127 chr9 107418693 107418762 -16657410 - MER58B DNA MER1_type -254 87 26 6 1404 250 279 0 60 chr9 107420002 107420086 -16656086 - MamGypLTR2 LTR Gypsy -905 284 206 6 1404 236 286 18 62 chr9 107420007 107420119 -16656053 - LTR81B LTR ERV1? -890 503 397 6 1404 322 211 28 28 chr9 107421011 107421118 -16655054 + C-rich Low_complexity Low_complexity 5 111 0 6 1404 262 258 0 29 chr9 107422711 107422779 -16653393 + CT-rich Low_complexity Low_complexity 5 70 0 6 1404 229 257 106 9 chr9 107422992 107423090 -16653082 + B1F SINE Alu 1 112 -5 6 1404 819 267 57 0 chr9 107423146 107423356 -16652816 + ID_B1 SINE B4 3 224 0 6 1404 231 114 0 0 chr9 107423923 107423958 -16652214 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1404 207 186 0 0 chr9 107424092 107424135 -16652037 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1404 206 266 25 25 chr9 107429381 107429462 -16646710 + C-rich Low_complexity Low_complexity 2 82 0 6 1404 432 0 0 0 chr9 107430835 107430883 -16645289 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1404 21 0 0 0 chr9 107431341 107431362 -16644810 + AT_rich Low_complexity Low_complexity 1 21 0 6 1404 324 0 0 0 chr9 107432175 107432211 -16643961 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1404 252 0 0 0 chr9 107432263 107432291 -16643881 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1404 402 21 0 0 chr9 107432419 107432466 -16643706 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1404 233 108 0 0 chr9 107432609 107432646 -16643526 - B1F SINE Alu -12 137 101 6 1404 490 275 36 7 chr9 107433026 107433165 -16643007 + ID_B1 SINE B4 80 222 -2 6 1404 617 267 42 84 chr9 107433198 107433435 -16642737 + B4A SINE B4 11 237 -55 6 1404 501 261 34 0 chr9 107433428 107433547 -16642625 + B1_Mur1 SINE Alu 10 132 -17 6 1404 212 54 54 0 chr9 107433661 107433698 -16642474 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1404 423 280 98 0 chr9 107433957 107434089 -16642083 - ID_B1 SINE B4 -1 223 79 6 1404 231 346 98 42 chr9 107433965 107434093 -16642079 + YREP_Mm Unknown Unknown 186 317 -1495 6 1404 225 0 0 0 chr9 107434102 107434127 -16642045 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 6 1404 994 152 196 6 chr9 107434127 107434296 -16641876 - B3 SINE B2 -12 204 1 6 1404 231 346 98 42 chr9 107434296 107434381 -16641791 + YREP_Mm Unknown Unknown 318 411 -1401 6 1404 347 0 0 23 chr9 107434442 107434486 -16641686 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 6 1404 216 0 0 0 chr9 107434488 107434512 -16641660 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1404 515 164 276 0 chr9 107434616 107434732 -16641440 - B1_Mur4 SINE Alu 0 150 3 6 1404 360 148 0 0 chr9 107434924 107434985 -16641187 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 1404 465 221 152 84 chr9 107434997 107435175 -16640997 + B3A SINE B2 2 191 -7 6 1404 1189 44 0 0 chr9 107435197 107435334 -16640838 - B1_Mm SINE Alu -10 137 1 6 1404 976 134 227 0 chr9 107435437 107435609 -16640563 - B3 SINE B2 -4 212 2 6 1404 32 26 0 0 chr9 107436348 107436387 -16639785 + GC_rich Low_complexity Low_complexity 1 39 0 6 1404 1140 70 28 0 chr9 107438740 107438883 -16637289 + B1_Mus2 SINE Alu 1 147 0 6 1404 322 257 239 0 chr9 107439637 107439750 -16636422 + B1F1 SINE Alu 5 144 -5 6 1404 727 282 40 62 chr9 107441318 107441545 -16634627 + ID_B1 SINE B4 1 222 -2 6 1404 420 183 0 0 chr9 107441577 107441648 -16634524 - PB1D9 SINE Alu 0 120 50 6 1404 231 283 0 147 chr9 107441648 107441693 -16634479 - ID_B1 SINE B4 0 224 126 6 1404 186 43 0 0 chr9 107445448 107445471 -16630701 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 6 1404 1160 50 0 0 chr9 107446205 107446345 -16629827 + B1_Mus2 SINE Alu 2 141 -6 6 1404 180 0 0 0 chr9 107446347 107446367 -16629805 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1404 807 182 28 14 chr9 107448204 107448349 -16627823 - B1_Mur2 SINE Alu -1 148 2 6 1404 221 167 0 0 chr9 107448358 107448400 -16627772 + T-rich Low_complexity Low_complexity 2 43 0 6 1404 563 304 84 40 chr9 107448423 107448625 -16627547 - ID_B1 SINE B4 -11 213 3 6 1404 555 244 69 0 chr9 107448772 107448903 -16627269 + B1F SINE Alu 3 142 -7 6 1404 389 303 66 29 chr9 107448952 107449088 -16627084 + B1F SINE Alu 4 144 -5 6 1404 309 274 7 133 chr9 107449293 107449428 -16626744 + PB1D9 SINE Alu 3 120 0 6 1404 367 269 73 18 chr9 107450352 107450462 -16625710 - PB1D10 SINE Alu -1 116 1 6 1404 534 158 72 19 chr9 107454845 107454972 -16621200 - B1_Mur1 SINE Alu 0 149 16 6 1404 395 264 125 23 chr9 107455642 107455770 -16620402 + ID_B1 SINE B4 83 223 -1 6 1404 1178 234 90 32 chr9 107455795 107456171 -16620001 - RMER10B LTR ERVL 0 398 1 6 1404 189 0 0 0 chr9 107457028 107457049 -16619123 + (CACG)n Simple_repeat Simple_repeat 1 21 0 6 1404 1100 86 0 18 chr9 107458657 107458823 -16617349 + B2_Mm2 SINE B2 29 191 -4 6 1404 278 239 0 40 chr9 107459356 107459430 -16616742 - ID4_ SINE ID -2 81 11 6 1404 1042 63 7 0 chr9 107460812 107460954 -16615218 - B1_Mus1 SINE Alu 0 148 6 6 1404 407 255 49 92 chr9 107460838 107461002 -16615170 - MT2B2 LTR ERVL -308 276 120 6 1404 254 321 12 0 chr9 107460993 107461015 -16615157 + B4 SINE B4 64 86 -206 6 1404 381 281 28 6 chr9 107461015 107461128 -16615044 + B1F SINE Alu 1 120 0 6 1404 544 316 5 71 chr9 107461239 107461450 -16614722 + B3A SINE B2 2 198 0 6 1404 369 318 34 12 chr9 107461450 107461604 -16614568 + B3A SINE B2 12 168 -27 6 1404 942 183 78 34 chr9 107461604 107461808 -16614364 - B3 SINE B2 -3 213 1 6 1404 301 362 38 33 chr9 107461808 107461836 -16614336 + B2_Mm2 SINE B2 169 195 0 6 1404 491 233 0 49 chr9 107461904 107462026 -16614146 + PB1D10 SINE Alu 1 116 -1 6 1404 467 296 20 14 chr9 107462037 107462184 -16613988 + B1F1 SINE Alu 1 148 -1 6 1404 226 247 81 61 chr9 107462184 107462239 -16613933 + BC1_Mm scRNA scRNA 2 62 -90 6 1404 2300 142 66 41 chr9 107462239 107462650 -16613522 - MTC LTR MaLR 0 421 1 6 1404 226 247 81 61 chr9 107462650 107462693 -16613479 + BC1_Mm scRNA scRNA 63 102 -50 6 1404 229 293 35 134 chr9 107462991 107463133 -16613039 + MT2B LTR ERVL 126 253 -348 7 1404 470 318 32 19 chr9 107463026 107463042 -16613130 + ID_B1 SINE B4 67 222 -2 7 1404 534 268 22 0 chr9 107463042 107463180 -16612992 + B1F2 SINE Alu 7 147 -2 7 1404 850 152 198 78 chr9 107463216 107463408 -16612764 + B3 SINE B2 2 216 0 7 1404 756 232 8 13 chr9 107463429 107463605 -16612567 + B3 SINE B2 10 194 -4 7 1404 538 184 143 8 chr9 107465036 107465162 -16611010 + B1_Mur1 SINE Alu 7 149 0 7 1404 263 333 64 16 chr9 107473493 107473618 -16602554 - MIRc SINE MIR -108 160 30 7 1404 248 227 212 0 chr9 107474234 107474300 -16601872 + ID4_ SINE ID 4 83 0 7 1404 207 100 0 0 chr9 107475489 107475519 -16600653 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1404 1201 62 7 0 chr9 107475519 107475665 -16600507 - B1_Mus1 SINE Alu 0 148 2 7 1404 441 0 0 0 chr9 107475890 107475939 -16600233 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1404 334 205 0 13 chr9 107475940 107476013 -16600159 + ID4 SINE ID 18 86 -66 7 1404 583 211 15 30 chr9 107476030 107476162 -16600010 - B1F2 SINE Alu -10 139 10 7 1404 227 290 58 0 chr9 107476105 107476174 -16599998 - B4A SINE B4 -142 150 78 7 1404 1325 103 27 16 chr9 107476190 107476378 -16599794 + B2_Mm2 SINE B2 2 191 -4 7 1404 1118 80 0 0 chr9 107476383 107476520 -16599652 + B1_Mus2 SINE Alu 3 139 -8 7 1404 357 24 0 0 chr9 107476520 107476562 -16599610 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 7 1404 1038 123 0 0 chr9 107476615 107476777 -16599395 + (GAA)n Simple_repeat Simple_repeat 3 164 0 7 1404 606 117 175 0 chr9 107477199 107477319 -16598853 + B1_Mur4 SINE Alu 6 146 -4 7 1404 365 261 126 7 chr9 107477203 107477338 -16598834 + B4A SINE B4 94 244 -48 7 1404 358 304 60 17 chr9 107477377 107477494 -16598678 + RSINE1 SINE B4 3 124 -41 7 1404 422 319 90 7 chr9 107477493 107477638 -16598534 - B3A SINE B2 -24 174 18 7 1404 629 306 76 34 chr9 107477742 107478006 -16598166 + RMER15 LTR ERVL 301 575 0 7 1404 351 113 0 0 chr9 107478642 107478695 -16597477 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1404 233 316 0 0 chr9 107478843 107478900 -16597272 + ID2 SINE ID 1 57 -26 7 175 251 335 68 37 chr9 107478912 107479073 -16597099 + ORSL DNA Tip100 102 267 -8 7 1405 214 400 0 65 chr9 107482010 107482117 -16594055 - MIRb SINE MIR -6 262 163 7 1405 526 148 222 0 chr9 107482194 107482302 -16593870 + B1_Mus1 SINE Alu 2 133 -15 7 1405 653 208 19 38 chr9 107482277 107482294 -16593878 + ID_B1 SINE B4 68 222 0 7 1405 1028 57 14 0 chr9 107482294 107482435 -16593737 + B1_Mus1 SINE Alu 6 148 0 7 1405 214 50 24 24 chr9 107482440 107482481 -16593691 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 7 1405 610 156 152 30 chr9 107483884 107484016 -16592156 + B1_Mur3 SINE Alu 1 148 -1 7 1405 216 86 0 0 chr9 107484017 107484052 -16592120 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1405 1121 83 14 0 chr9 107488124 107488269 -16587903 + B1_Mm SINE Alu 1 147 0 7 1405 40 0 0 0 chr9 107488269 107488309 -16587863 + AT_rich Low_complexity Low_complexity 1 40 0 7 1405 1047 115 0 45 chr9 107488323 107488478 -16587694 + B1_Mur4 SINE Alu 3 150 0 7 1405 1260 41 0 0 chr9 107489316 107489463 -16586709 + B1_Mm SINE Alu 1 147 0 7 1405 793 184 0 33 chr9 107491837 107491989 -16584183 + B1_Mur4 SINE Alu 3 149 -1 7 1405 780 95 19 0 chr9 107494078 107494183 -16581989 + PB1D9 SINE Alu 1 107 -13 7 1405 326 287 0 11 chr9 107494205 107494293 -16581879 + PB1D10 SINE Alu 5 91 -26 7 1405 183 100 0 0 chr9 107494296 107494326 -16581846 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 7 1405 186 143 0 0 chr9 107495392 107495427 -16580745 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 7 1405 198 0 0 0 chr9 107497136 107497158 -16579014 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1405 308 255 44 70 chr9 107497170 107497284 -16578888 - B4 SINE B4 -83 209 99 7 1405 357 240 108 62 chr9 107497606 107497621 -16578551 - B1F1 SINE Alu 0 149 137 7 1405 303 28 0 0 chr9 107497621 107497657 -16578515 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 7 1405 357 240 108 62 chr9 107497657 107497770 -16578402 - B1F1 SINE Alu -13 136 15 7 1405 1216 61 0 0 chr9 107497775 107497922 -16578250 + B1_Mus1 SINE Alu 2 148 0 7 1405 486 319 17 57 chr9 107497989 107498165 -16578007 - B4A SINE B4 -113 179 11 7 1405 302 247 36 36 chr9 107498188 107498272 -16577900 - PB1 SINE Alu -8 119 36 7 1405 621 171 9 18 chr9 107498334 107498447 -16577725 - B1F2 SINE Alu -3 146 35 7 1405 230 291 97 87 chr9 107498396 107498592 -16577580 - MT2B2 LTR ERVL -344 240 43 7 1405 266 340 98 20 chr9 107500278 107500431 -16575741 + L2a LINE L2 2984 3148 -278 1 1405 186 167 0 0 chr9 107502921 107502957 -16573215 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1405 234 298 13 4 chr9 107504831 107504913 -16571259 + L2b LINE L2 3024 3114 -312 3 1405 437 276 31 23 chr9 107509757 107509887 -16566285 - ID_B1 SINE B4 0 224 94 4 1405 503 181 219 0 chr9 107512036 107512141 -16564031 - B1_Mm SINE Alu -11 136 9 5 1405 863 183 0 0 chr9 107513436 107513578 -16562594 - B1_Mus2 SINE Alu -5 142 1 6 1405 21 57 0 0 chr9 107514987 107515022 -16561150 + GC_rich Low_complexity Low_complexity 1 35 0 7 1405 1535 33 49 0 chr9 107515833 107516016 -16560156 - B2_Mm1a SINE B2 0 193 2 8 1405 382 273 53 26 chr9 107516021 107516134 -16560038 - PB1D10 SINE Alu -1 116 1 9 1405 435 19 0 0 chr9 107519213 107519265 -16556907 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1405 410 293 20 10 chr9 107519499 107519599 -16556573 - PB1D10 SINE Alu -13 104 4 1 1405 1210 68 0 0 chr9 107519630 107519778 -16556394 + B1_Mus1 SINE Alu 1 148 0 1 1405 189 94 0 0 chr9 107519778 107519810 -16556362 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1405 1354 93 0 106 chr9 107519864 107520081 -16556091 + B2_Mm2 SINE B2 1 194 -1 1 1405 1420 96 11 0 chr9 107523139 107523327 -16552845 + B2_Mm1t SINE B2 1 190 -3 1 1405 219 36 0 0 chr9 107523520 107523548 -16552624 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1405 403 300 0 0 chr9 107524020 107524120 -16552052 - ID_B1 SINE B4 -11 213 114 1 1405 1184 69 7 0 chr9 107524166 107524311 -16551861 - B1_Mus2 SINE Alu 0 147 2 1 1405 697 219 22 0 chr9 107524324 107524461 -16551711 - B1_Mur1 SINE Alu -8 141 2 1 1405 949 250 20 10 chr9 107524494 107524696 -16551476 + B3 SINE B2 2 205 -11 2 1405 800 247 21 31 chr9 107524696 107524877 -16551295 - B3 SINE B2 -36 180 1 2 1405 538 303 7 27 chr9 107524878 107525027 -16551145 - B3A SINE B2 -18 180 35 2 1405 1326 68 57 0 chr9 107525051 107525228 -16550944 - B2_Mm2 SINE B2 -8 187 1 2 1405 542 280 98 0 chr9 107525266 107525409 -16550763 - RSINE1 SINE B4 -7 158 2 2 1405 412 226 73 33 chr9 107525418 107525598 -16550574 - B3A SINE B2 -3 192 3 2 1405 218 286 0 73 chr9 107525613 107525681 -16550491 - ID4_ SINE ID 0 83 21 2 1405 1016 135 0 13 chr9 107525719 107525869 -16550303 - B1_Mur4 SINE Alu -2 148 1 2 1405 1130 191 19 5 chr9 107528125 107528336 -16547836 + B3 SINE B2 3 216 0 2 1405 22 0 0 0 chr9 107528364 107528386 -16547786 + AT_rich Low_complexity Low_complexity 1 22 0 2 1405 242 245 19 0 chr9 107528397 107528450 -16547722 + PB1D9 SINE Alu 3 56 -64 3 1405 567 0 0 0 chr9 107528765 107528828 -16547344 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1405 214 182 0 22 chr9 107529585 107529630 -16546542 + G-rich Low_complexity Low_complexity 4 47 0 3 1405 180 167 0 0 chr9 107529909 107529939 -16546233 + MIR SINE MIR 114 143 -65 3 1405 268 192 116 141 chr9 107530623 107530744 -16545428 + MT2B LTR ERVL 140 257 -344 3 1405 743 117 108 15 chr9 107530661 107530791 -16545381 + B1_Mur4 SINE Alu 9 150 0 3 1405 504 0 0 0 chr9 107531407 107531463 -16544709 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1405 219 167 0 23 chr9 107531588 107531631 -16544541 + CT-rich Low_complexity Low_complexity 2 43 0 3 1405 793 138 0 15 chr9 107533559 107533691 -16542481 - B3 SINE B2 -86 130 1 3 1405 183 80 0 0 chr9 107535688 107535713 -16540459 + (CCG)n Simple_repeat Simple_repeat 3 27 0 3 1405 21 0 0 0 chr9 107535956 107535977 -16540195 + AT_rich Low_complexity Low_complexity 1 21 0 4 1405 291 154 0 0 chr9 107536818 107536883 -16539289 + GA-rich Low_complexity Low_complexity 2 66 0 4 1405 190 135 0 55 chr9 107537559 107537614 -16538558 + (CCCGG)n Simple_repeat Simple_repeat 3 54 0 4 1405 23 78 0 0 chr9 107537688 107537739 -16538433 + GC_rich Low_complexity Low_complexity 1 51 0 4 1405 1170 122 0 0 chr9 107538710 107538882 -16537290 + B2_Mm2 SINE B2 2 173 -22 4 1405 1426 85 21 0 chr9 107538884 107539073 -16537099 + B2_Mm2 SINE B2 1 193 -2 4 1405 558 0 0 0 chr9 107539330 107539392 -16536780 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 4 1405 825 161 0 14 chr9 107540231 107540376 -16535796 + B1_Mur1 SINE Alu 6 148 -1 4 1405 737 119 8 25 chr9 107540617 107540738 -16535434 + B1_Mus1 SINE Alu 16 134 -14 4 1405 252 0 0 0 chr9 107540738 107540766 -16535406 + (CAT)n Simple_repeat Simple_repeat 3 30 0 4 1405 1185 181 177 55 chr9 107540785 107541129 -16535043 + RMER10B LTR ERVL 1 386 -12 5 1405 350 91 18 0 chr9 107541129 107541184 -16534988 + (TAA)n Simple_repeat Simple_repeat 2 57 0 5 1405 744 12 0 0 chr9 107541237 107541322 -16534850 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1405 474 223 40 40 chr9 107541677 107541803 -16534369 + ID_B1 SINE B4 90 215 -9 5 1405 653 193 35 11 chr9 107541977 107542145 -16534027 + B3 SINE B2 45 216 0 5 1405 23 0 0 0 chr9 107542151 107542174 -16533998 + AT_rich Low_complexity Low_complexity 1 23 0 5 1405 468 0 0 0 chr9 107542377 107542429 -16533743 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1405 582 15 0 0 chr9 107542940 107543007 -16533165 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1405 879 177 7 7 chr9 107544607 107544755 -16531417 + B1_Mur4 SINE Alu 1 148 -2 5 1405 868 159 14 0 chr9 107544860 107544998 -16531174 - B1_Mur1 SINE Alu -7 142 3 5 1405 614 47 90 4 chr9 107545011 107545112 -16531060 - B1_Mus1 SINE Alu 0 120 14 6 1405 870 209 72 34 chr9 107545120 107545328 -16530844 - B3 SINE B2 0 216 1 6 1405 1037 138 201 0 chr9 107545369 107545543 -16530629 + B3 SINE B2 4 212 -4 6 1405 860 165 23 0 chr9 107545549 107545682 -16530490 + B1_Mur2 SINE Alu 1 136 -13 6 1405 221 0 35 0 chr9 107545682 107545711 -16530461 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 6 1405 696 210 222 0 chr9 107545718 107545885 -16530287 - B3 SINE B2 -12 204 1 6 1405 782 237 66 35 chr9 107545914 107546111 -16530061 - B3A SINE B2 -13 203 1 6 1405 208 271 38 86 chr9 107546116 107546221 -16529951 - L2 LINE L2 -603 2816 2717 6 1405 793 233 7 0 chr9 107546418 107546564 -16529608 + B1_Mur1 SINE Alu 2 148 -1 6 1405 259 274 14 0 chr9 107546659 107546732 -16529440 - RSINE1 SINE B4 -89 76 3 6 1405 337 296 97 75 chr9 107547768 107547954 -16528218 + ID_B1 SINE B4 3 192 -32 7 1405 329 0 24 0 chr9 107548201 107548242 -16527930 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 7 1405 1024 98 0 40 chr9 107548393 107548542 -16527630 - B1_Mus1 SINE Alu -1 147 5 7 1405 630 26 0 0 chr9 107548567 107548643 -16527529 + (TC)n Simple_repeat Simple_repeat 1 76 0 7 1405 225 0 0 0 chr9 107548643 107548667 -16527505 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1405 583 274 24 43 chr9 107548671 107548835 -16527337 - B3A SINE B2 -36 162 2 7 1405 561 279 37 6 chr9 107549305 107549467 -16526705 - B3A SINE B2 -24 174 8 7 1405 422 270 0 0 chr9 107549549 107549649 -16526523 + B1_Mur1 SINE Alu 23 122 -27 7 1405 1592 48 0 0 chr9 107549652 107549840 -16526332 + B2_Mm1t SINE B2 1 188 -5 7 1405 1245 41 7 0 chr9 107549854 107550000 -16526172 + B1_Mus1 SINE Alu 2 148 0 7 1405 1021 128 6 11 chr9 107550073 107550247 -16525925 + B2_Mm2 SINE B2 1 173 -22 8 1405 432 0 0 0 chr9 107550252 107550300 -16525872 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1405 213 154 0 88 chr9 107550325 107550382 -16525790 + A-rich Low_complexity Low_complexity 1 52 0 8 1405 752 177 0 75 chr9 107550615 107550774 -16525398 - B1_Mur3 SINE Alu -2 147 1 8 1405 1472 59 11 5 chr9 107550910 107551098 -16525074 + B2_Mm2 SINE B2 1 189 -6 8 1405 237 266 16 0 chr9 107551111 107551175 -16524997 + ID4 SINE ID 10 74 -9 8 1405 395 256 0 0 chr9 107551187 107551265 -16524907 + ID4 SINE ID 1 78 -5 8 1405 226 238 175 0 chr9 107551355 107551418 -16524754 - PB1D10 SINE Alu -14 103 30 8 1405 216 366 117 11 chr9 107551462 107551473 -16524699 + ID_B1 SINE B4 73 176 -48 8 1405 235 289 169 0 chr9 107551473 107551556 -16524616 + B1F1 SINE Alu 2 98 -51 8 1405 1166 117 49 22 chr9 107551557 107551740 -16524432 - B2_Mm2 SINE B2 -5 190 3 9 1405 196 269 125 31 chr9 107553881 107553977 -16522195 + MIRb SINE MIR 50 154 -114 9 1405 532 133 171 0 chr9 107554828 107554933 -16521239 + B2_Mm2 SINE B2 2 124 -71 9 1405 474 18 0 0 chr9 107554963 107555018 -16521154 + (CATA)n Simple_repeat Simple_repeat 4 58 0 9 1405 1222 68 0 0 chr9 107555152 107555300 -16520872 + B1_Mus1 SINE Alu 1 148 0 9 1405 282 116 0 0 chr9 107555300 107555343 -16520829 + (A)n Simple_repeat Simple_repeat 1 43 0 9 1405 1429 23 57 23 chr9 107555343 107555518 -16520654 + B2_Mm1a SINE B2 1 181 -12 9 1405 726 96 0 0 chr9 107555518 107555622 -16520550 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 9 1405 523 246 73 106 chr9 107555891 107556109 -16520063 - ID_B1 SINE B4 -12 212 2 9 1405 649 184 60 169 chr9 107556177 107556252 -16519920 - RSINE1 SINE B4 0 165 105 9 1405 207 0 0 0 chr9 107556252 107556275 -16519897 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1405 1212 56 0 0 chr9 107556275 107556419 -16519753 - B1_Mus1 SINE Alu -3 145 2 1 1405 652 184 60 169 chr9 107556419 107556525 -16519647 - RSINE1 SINE B4 -61 104 4 9 1405 342 361 38 0 chr9 107556831 107556964 -16519208 + MIRb SINE MIR 14 151 -117 1 1405 276 301 183 0 chr9 107556998 107557091 -16519081 - PB1 SINE Alu -16 111 2 1 1405 21 0 0 0 chr9 107557233 107557254 -16518918 + GC_rich Low_complexity Low_complexity 1 21 0 1 1405 578 260 11 174 chr9 107563740 107563874 -16512298 + ID_B1 SINE B4 2 96 -128 1 1405 339 85 0 0 chr9 107563874 107563921 -16512251 + (TGG)n Simple_repeat Simple_repeat 2 48 0 1 1405 578 260 11 174 chr9 107563921 107564051 -16512121 + ID_B1 SINE B4 97 223 -1 1 1405 645 38 0 0 chr9 107564057 107564137 -16512035 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 1 1405 234 315 111 0 chr9 107564137 107564245 -16511927 - L2b LINE L2 -229 3146 3027 1 1405 738 232 0 0 chr9 107566595 107566737 -16509435 + B1_Mur2 SINE Alu 4 145 -4 1 1405 1098 133 77 0 chr9 107566747 107566893 -16509279 + B2_Mm2 SINE B2 1 155 -40 1 1405 546 16 0 0 chr9 107566893 107566956 -16509216 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 1 1405 1098 133 77 0 chr9 107566956 107566990 -16509182 + B2_Mm2 SINE B2 156 194 -1 1 1405 348 316 41 49 chr9 107567000 107567123 -16509049 + B4 SINE B4 77 198 -94 1 1405 713 200 22 7 chr9 107567025 107567161 -16509011 + B1_Mur3 SINE Alu 12 149 0 1 1405 200 213 43 0 chr9 107567812 107567859 -16508313 + L2a LINE L2 3377 3425 -1 1 1405 28 29 0 0 chr9 107569747 107569782 -16506390 + GC_rich Low_complexity Low_complexity 1 35 0 1 1405 224 336 42 58 chr9 107571032 107571152 -16505020 + ID_B1 SINE B4 29 146 -78 1 1405 486 0 0 0 chr9 107571909 107571963 -16504209 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1405 763 151 32 0 chr9 107573344 107573470 -16502702 - B1_Mur4 SINE Alu 0 150 21 1 1405 274 204 37 0 chr9 107573522 107573576 -16502596 + B1_Mur4 SINE Alu 2 57 -93 1 1405 201 39 0 0 chr9 107573586 107573612 -16502560 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1405 441 248 109 58 chr9 107573670 107573807 -16502365 - B1_Mur1 SINE Alu -5 144 1 1 1405 1499 172 82 9 chr9 107573952 107574281 -16501891 - Lx5 LINE L1 -76 6974 6622 1 1405 226 135 58 0 chr9 107574502 107574554 -16501618 + A-rich Low_complexity Low_complexity 5 59 0 1 1405 560 214 111 0 chr9 107574559 107574676 -16501496 - B1_Mur1 SINE Alu -14 135 6 1 1405 244 78 0 56 chr9 107574707 107574761 -16501411 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 1 1405 647 193 99 49 chr9 107574764 107574906 -16501266 - B1_Mur4 SINE Alu -1 149 1 1 1405 750 230 7 7 chr9 107574929 107575078 -16501094 - B1_Mur2 SINE Alu 0 149 1 1 1405 997 223 9 52 chr9 107575096 107575309 -16500863 - B3 SINE B2 -5 211 8 1 1405 697 273 39 22 chr9 107575356 107575536 -16500636 - B3A SINE B2 0 198 16 1 1405 3724 34 7 5 chr9 107575539 107575978 -16500194 + L1Md_F3 LINE L1 6131 6570 -14 1 1405 420 20 0 0 chr9 107575996 107576045 -16500127 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1405 566 211 16 47 chr9 107576045 107576174 -16499998 - B1_Mur1 SINE Alu -24 125 1 1 1405 520 136 80 0 chr9 107576433 107576521 -16499651 + PB1D10 SINE Alu 17 111 -6 1 1405 1076 51 65 7 chr9 107580142 107580281 -16495891 + B1_Mus2 SINE Alu 1 147 0 1 1405 1631 26 5 5 chr9 107580400 107580592 -16495580 + B2_Mm1a SINE B2 2 193 0 1 1405 735 160 8 16 chr9 107581017 107581144 -16495028 - B1_Mus1 SINE Alu -21 127 2 1 1405 365 267 30 115 chr9 107581144 107581197 -16494975 - MT2B LTR ERVL -448 153 115 1 1405 1373 81 21 0 chr9 107581395 107581581 -16494591 + B2_Mm2 SINE B2 1 190 -5 1 1405 448 125 136 0 chr9 107583632 107583720 -16492452 - B1_Mus2 SINE Alu -1 146 47 1 1405 29 28 0 0 chr9 107584676 107584712 -16491460 + AT_rich Low_complexity Low_complexity 1 36 0 1 1405 661 92 68 40 chr9 107585640 107585776 -16490396 - B1_Mur3 SINE Alu 0 149 12 1 1405 301 222 61 61 chr9 107585679 107585794 -16490378 - RLTR25B LTR ERVK -516 512 398 1 1405 192 77 0 0 chr9 107588677 107588703 -16487469 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1 1405 859 178 20 0 chr9 107588708 107588854 -16487318 - B1_Mur2 SINE Alu 0 149 1 1 1405 675 191 210 17 chr9 107588974 107589150 -16487022 + B3 SINE B2 1 210 -6 1 1405 745 155 15 30 chr9 107589181 107589314 -16486858 + B1_Mur2 SINE Alu 19 149 0 1 1405 318 148 0 0 chr9 107589315 107589369 -16486803 + (GGA)n Simple_repeat Simple_repeat 1 54 0 1 1405 922 41 8 8 chr9 107589370 107589494 -16486678 + (GGGAA)n Simple_repeat Simple_repeat 3 126 0 1 1405 1043 260 44 53 chr9 107590911 107591232 -16484940 - MER63D DNA AcHobo -697 364 47 1 1405 420 20 0 0 chr9 107593059 107593108 -16483064 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1405 416 321 31 42 chr9 107594234 107594426 -16481746 - MIRb SINE MIR -23 245 56 1 1405 27 0 0 0 chr9 107596289 107596316 -16479856 + AT_rich Low_complexity Low_complexity 1 27 0 1 1405 954 83 114 0 chr9 107596316 107596448 -16479724 - B1_Mus2 SINE Alu 0 147 1 1 1405 972 113 0 0 chr9 107596471 107596613 -16479559 + B2_Mm2 SINE B2 16 157 -38 1 1405 225 0 0 0 chr9 107596615 107596640 -16479532 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 1405 1026 105 142 0 chr9 107596651 107596813 -16479359 + B2_Mm2 SINE B2 1 185 -10 1 1405 239 277 143 0 chr9 107597725 107597844 -16478328 - MIRm SINE MIR -96 180 45 1 1405 623 294 26 53 chr9 107598879 107598890 -16477282 - CYRA11_Mm Unknown Y-chromosome -248 369 305 1 1405 948 176 42 31 chr9 107598890 107599083 -16477089 + URR1A DNA MER1_type 32 226 0 1 1405 623 294 26 53 chr9 107599083 107599105 -16477067 - CYRA11_Mm Unknown Y-chromosome -248 304 150 1 1405 219 69 0 0 chr9 107599995 107600024 -16476148 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1405 203 191 0 21 chr9 107601802 107601850 -16474322 + CT-rich Low_complexity Low_complexity 1 47 0 1 1405 303 253 12 12 chr9 107603621 107603705 -16472467 + PB1D10 SINE Alu 5 88 -29 1 1405 278 361 60 0 chr9 107603712 107603845 -16472327 - MIR SINE MIR -96 180 40 1 1405 516 32 0 0 chr9 107604468 107604530 -16471642 + (TCC)n Simple_repeat Simple_repeat 2 63 0 1 1405 286 254 28 14 chr9 107605995 107606067 -16470105 + L2b LINE L2 3287 3359 -16 1 1405 273 318 71 0 chr9 107606336 107606458 -16469714 + MIRm SINE MIR 39 171 -97 1 1405 522 0 0 0 chr9 107607113 107607171 -16469001 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1405 452 273 18 26 chr9 107607976 107608089 -16468083 - PB1D9 SINE Alu -8 112 1 1 175 219 123 14 58 chr9 107610068 107610137 -16466035 + GA-rich Low_complexity Low_complexity 1 66 0 1 1406 203 156 0 0 chr9 107610288 107610320 -16465852 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1406 27 81 0 29 chr9 107611990 107612092 -16464080 + GC_rich Low_complexity Low_complexity 1 99 0 1 1406 207 181 13 65 chr9 107612351 107612428 -16463744 + (CCCCG)n Simple_repeat Simple_repeat 5 77 0 1 1406 25 0 0 0 chr9 107612516 107612541 -16463631 + GC_rich Low_complexity Low_complexity 1 25 0 1 1406 441 259 28 44 chr9 107613195 107613377 -16462795 + CT-rich Low_complexity Low_complexity 1 179 0 1 1406 1171 44 0 0 chr9 107613623 107613759 -16462413 + B1_Mus1 SINE Alu 1 136 -12 1 1406 487 235 2 63 chr9 107613770 107613905 -16462267 + B1_Mur1 SINE Alu 2 149 0 1 1406 669 194 77 53 chr9 107614147 107614316 -16461856 + B2_Mm2 SINE B2 1 173 -22 1 1406 1459 55 27 0 chr9 107614681 107614864 -16461308 + B2_Mm1t SINE B2 2 189 -4 1 1406 1265 102 23 0 chr9 107614873 107615049 -16461123 - B2_Mm2 SINE B2 -14 181 2 1 1406 307 326 27 55 chr9 107615064 107615078 -16461094 - YREP_Mm Unknown Unknown -1492 320 183 1 1406 699 227 16 0 chr9 107615078 107615206 -16460966 + ID_B1 SINE B4 88 217 -7 1 1406 321 180 16 16 chr9 107615384 107615446 -16460726 + B1_Mur4 SINE Alu 5 66 -84 1 1406 618 249 113 31 chr9 107615446 107615641 -16460531 - ID_B1 SINE B4 -11 213 3 1 1406 611 213 8 52 chr9 107615714 107615848 -16460324 + B1_Mur1 SINE Alu 22 149 0 1 1406 200 352 33 11 chr9 107617307 107617399 -16458773 + L2c LINE L2 3051 3144 -243 1 1406 207 0 0 0 chr9 107617801 107617824 -16458348 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1406 564 15 0 0 chr9 107617824 107617888 -16458284 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1406 226 245 20 39 chr9 107618601 107618652 -16457520 + B1F2 SINE Alu 1 50 -99 1 1406 202 268 0 0 chr9 107618902 107618943 -16457229 + C-rich Low_complexity Low_complexity 4 44 0 1 1406 1456 54 43 0 chr9 107620246 107620431 -16455741 - B2_Mm2 SINE B2 -2 193 1 1 1406 945 236 0 11 chr9 107620622 107620810 -16455362 - ID_B1 SINE B4 -34 190 5 1 1406 316 259 24 12 chr9 107621354 107621436 -16454736 - B4A SINE B4 -209 83 1 1 1406 332 213 298 24 chr9 107621501 107621669 -16454503 - B3 SINE B2 -1 215 2 1 1406 1050 61 53 0 chr9 107622169 107622300 -16453872 + B1_Mus2 SINE Alu 1 138 -9 1 1406 279 0 0 0 chr9 107622300 107622331 -16453841 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1406 428 194 82 22 chr9 107622359 107622520 -16453652 + B3A SINE B2 5 181 -14 1 1406 690 218 42 0 chr9 107622526 107622668 -16453504 - B1_Mur3 SINE Alu 0 149 2 1 1406 772 243 59 0 chr9 107622698 107622900 -16453272 - ID_B1 SINE B4 -10 214 1 1 1406 1515 115 9 0 chr9 107623298 107623515 -16452657 + URR1B DNA MER1_type 1 219 -6 1 1406 206 288 76 0 chr9 107625121 107625187 -16450985 - MIRb SINE MIR -102 166 96 2 1406 242 213 21 0 chr9 107626294 107626341 -16449831 + MER121 Unknown Unknown 281 328 -84 2 1406 225 0 0 0 chr9 107626918 107626943 -16449229 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1406 832 207 0 0 chr9 107627527 107627662 -16448510 + B1_Mur2 SINE Alu 1 135 -14 2 1406 362 115 16 0 chr9 107627663 107627724 -16448448 + (GGA)n Simple_repeat Simple_repeat 2 63 0 2 1406 882 62 0 0 chr9 107628736 107628849 -16447323 + B1_Mus1 SINE Alu 36 148 0 2 1406 975 63 48 0 chr9 107630433 107630559 -16445613 + B1_Mus1 SINE Alu 4 135 -13 2 1406 341 154 11 0 chr9 107630681 107630772 -16445400 + CT-rich Low_complexity Low_complexity 1 92 0 2 1406 192 77 0 0 chr9 107631500 107631526 -16444646 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1406 401 110 14 0 chr9 107633863 107633936 -16442236 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1406 345 247 68 0 chr9 107633943 107634016 -16442156 - RSINE1 SINE B4 -48 117 40 2 1406 1294 57 11 0 chr9 107634326 107634502 -16441670 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2 1406 261 0 0 0 chr9 107634526 107634555 -16441617 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1406 1074 83 0 0 chr9 107634556 107634689 -16441483 - B1_Mus1 SINE Alu -15 133 1 2 1406 1583 41 0 10 chr9 107634699 107634894 -16441278 - B2_Mm2 SINE B2 -2 193 1 2 1406 415 163 161 0 chr9 107635457 107635550 -16440622 - B1F SINE Alu -34 115 6 2 1406 913 124 14 14 chr9 107636017 107636156 -16440016 - B1_Mur1 SINE Alu -2 147 9 2 1406 1169 63 0 0 chr9 107636320 107636463 -16439709 - B1_Mm SINE Alu 0 147 5 2 1406 186 133 0 0 chr9 107638419 107638449 -16437723 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 2 1406 766 224 0 7 chr9 107639905 107640053 -16436119 - B1_Mur1 SINE Alu 0 149 3 2 1406 620 218 141 40 chr9 107640071 107640248 -16435924 - B3A SINE B2 -3 195 1 2 1406 349 241 22 54 chr9 107640258 107640350 -16435822 - PB1D10 SINE Alu -5 112 24 2 1406 471 190 138 10 chr9 107641803 107641913 -16434259 + B1_Mur2 SINE Alu 2 125 -25 2 1406 433 245 148 19 chr9 107641938 107642046 -16434126 + B3 SINE B2 5 126 -69 2 1406 387 229 56 10 chr9 107642265 107642363 -16433809 + PB1D7 SINE Alu 11 113 -37 2 1406 370 233 352 16 chr9 107642363 107642485 -16433687 + B3 SINE B2 2 164 -52 2 1406 256 307 23 136 chr9 107642613 107642643 -16433529 + ID_B1 SINE B4 108 224 0 2 1406 280 283 88 29 chr9 107642643 107642745 -16433427 + B1F SINE Alu 42 149 0 2 1406 715 249 92 15 chr9 107644210 107644406 -16431766 - B3 SINE B2 0 216 6 2 1406 644 237 0 62 chr9 107644439 107644583 -16431589 + B1_Mus2 SINE Alu 13 147 0 2 1406 1355 77 27 11 chr9 107645418 107645601 -16430571 + B2_Mm2 SINE B2 2 187 -8 2 1406 298 245 92 28 chr9 107646002 107646111 -16430061 + PB1D10 SINE Alu 1 116 -1 2 1406 347 253 34 57 chr9 107647666 107647754 -16428418 + RSINE1 SINE B4 49 134 -31 2 1406 248 320 101 85 chr9 107647864 107648052 -16428120 - B4A SINE B4 -98 194 4 2 1406 208 145 0 52 chr9 107648096 107648154 -16428018 + A-rich Low_complexity Low_complexity 5 59 0 2 1406 445 296 0 36 chr9 107648652 107648764 -16427408 + PB1D10 SINE Alu 10 117 0 2 1406 290 212 69 81 chr9 107648790 107648877 -16427295 + ID_B1 SINE B4 102 187 -37 2 1406 252 314 58 11 chr9 107649041 107649128 -16427044 + B3 SINE B2 103 193 -23 2 1406 798 146 43 31 chr9 107649120 107649283 -16426889 + B2_Mm2 SINE B2 28 192 -3 2 1406 340 288 103 8 chr9 107649277 107649403 -16426769 - ID_B1 SINE B4 -10 214 77 2 1406 326 185 232 12 chr9 107649409 107649491 -16426681 - B1_Mur2 SINE Alu -7 142 43 2 1406 297 319 146 42 chr9 107649547 107649691 -16426481 - RSINE1 SINE B4 -5 160 2 2 1406 401 265 193 81 chr9 107649995 107650291 -16425881 + L1MB7 LINE L1 5815 6143 -41 2 1406 264 122 0 0 chr9 107650348 107650389 -16425783 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1406 22 56 0 0 chr9 107650408 107650444 -16425728 + AT_rich Low_complexity Low_complexity 1 36 0 2 1406 202 132 0 26 chr9 107650611 107650650 -16425522 + G-rich Low_complexity Low_complexity 4 41 0 2 1406 323 302 82 70 chr9 107650750 107650828 -16425344 - MT2B LTR ERVL -262 339 241 2 1406 494 211 93 43 chr9 107650836 107650975 -16425197 - B1_Mur2 SINE Alu 0 149 4 2 1406 323 302 82 70 chr9 107650975 107651059 -16425113 - MT2B LTR ERVL -361 240 167 2 1406 640 238 52 19 chr9 107651240 107651394 -16424778 + B3 SINE B2 58 216 0 2 1406 636 256 21 64 chr9 107651496 107651684 -16424488 - B3 SINE B2 -8 208 29 2 1406 412 314 28 28 chr9 107651725 107651866 -16424306 - RSINE1 SINE B4 -19 146 6 2 1406 226 118 29 0 chr9 107653048 107653082 -16423090 + 4.5SRNA scRNA scRNA 54 88 -6 2 1406 577 116 0 0 chr9 107653052 107653138 -16423034 + B1_Mur4 SINE Alu 65 150 0 2 1406 569 283 81 28 chr9 107653262 107653473 -16422699 - ID_B1 SINE B4 -2 222 1 2 1406 25 0 0 0 chr9 107653605 107653630 -16422542 + GC_rich Low_complexity Low_complexity 1 25 0 2 1406 216 237 303 0 chr9 107653636 107653712 -16422460 - B1_Mus2 SINE Alu -42 105 7 2 1406 420 192 27 0 chr9 107654812 107654885 -16421287 - B4A SINE B4 -14 278 204 2 1406 197 178 22 0 chr9 107655489 107655534 -16420638 + GA-rich Low_complexity Low_complexity 1 46 0 2 1406 1188 111 0 0 chr9 107655534 107655714 -16420458 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1406 1110 45 8 0 chr9 107655776 107655909 -16420263 + B1_Mus2 SINE Alu 2 135 -12 2 1406 186 71 0 0 chr9 107655914 107655942 -16420230 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1406 1118 43 7 21 chr9 107656007 107656144 -16420028 + B1_Mm SINE Alu 2 138 -9 2 1406 264 30 0 0 chr9 107656144 107656177 -16419995 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 1406 346 311 29 0 chr9 107657134 107657237 -16418935 - ID_B1 SINE B4 -4 220 115 2 1406 684 263 95 84 chr9 107657332 107657511 -16418661 - B4A SINE B4 -8 284 91 2 1406 390 114 0 0 chr9 107657511 107657581 -16418591 + (TATG)n Simple_repeat Simple_repeat 2 71 0 2 1406 684 263 95 84 chr9 107657581 107657602 -16418570 - B4A SINE B4 -202 90 79 2 1406 327 25 0 0 chr9 107657602 107657642 -16418530 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 2 1406 684 263 95 84 chr9 107657642 107657714 -16418458 - B4A SINE B4 -214 78 8 2 1406 254 321 0 0 chr9 107657748 107657804 -16418368 - B1F SINE Alu -26 123 68 2 1406 1458 63 15 26 chr9 107658771 107658966 -16417206 + B2_Mm2 SINE B2 1 193 -2 2 1406 481 177 198 0 chr9 107660312 107660408 -16415764 - PB1D9 SINE Alu -5 115 1 2 1406 645 201 104 7 chr9 107660928 107661063 -16415109 - B1_Mur4 SINE Alu -2 148 1 2 1406 444 275 18 27 chr9 107661066 107661178 -16414994 - PB1D10 SINE Alu -5 112 2 2 1406 21 0 0 0 chr9 107661208 107661229 -16414943 + AT_rich Low_complexity Low_complexity 1 21 0 2 1406 990 31 139 0 chr9 107662865 107662994 -16413178 + B1_Mm SINE Alu 1 147 0 2 1406 186 43 0 0 chr9 107662994 107663017 -16413155 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1406 1086 77 28 0 chr9 107663254 107663397 -16412775 + B1_Mus2 SINE Alu 1 147 0 2 1406 421 150 62 0 chr9 107663420 107663500 -16412672 + B1_Mus1 SINE Alu 37 121 -27 2 1406 369 243 29 0 chr9 107663793 107663863 -16412309 + RSINE1 SINE B4 65 136 -29 2 1406 1049 104 0 0 chr9 107664273 107664408 -16411764 + B1_Mus1 SINE Alu 3 137 -11 2 1406 486 0 0 0 chr9 107664408 107664462 -16411710 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 1406 363 293 0 42 chr9 107664479 107664493 -16411679 + B4A SINE B4 75 84 -208 2 1406 427 235 62 5 chr9 107664493 107664609 -16411563 + B1F2 SINE Alu 3 120 0 2 1406 549 0 0 0 chr9 107664663 107664724 -16411448 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1406 408 40 0 0 chr9 107664724 107664773 -16411399 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1406 270 376 32 0 chr9 107664786 107664879 -16411293 - PB1 SINE Alu -30 97 2 2 1406 1324 86 32 0 chr9 107665125 107665311 -16410861 - B2_Mm1a SINE B2 -1 192 1 2 1406 810 208 29 12 chr9 107665337 107665507 -16410665 + B2_Mm2 SINE B2 21 193 -2 2 1406 566 200 87 48 chr9 107665517 107665643 -16410529 + B1_Mur4 SINE Alu 6 136 -14 2 1406 746 188 28 17 chr9 107666009 107666174 -16409998 + B3 SINE B2 15 192 -6 2 1406 297 101 393 10 chr9 107666178 107666277 -16409895 - B2_Mm2 SINE B2 -9 186 50 2 1406 723 96 19 0 chr9 107666354 107666458 -16409714 - B2_Mm2 SINE B2 -87 108 3 2 1406 1193 73 96 0 chr9 107666476 107666654 -16409518 - B2_Mm2 SINE B2 0 195 1 2 1406 363 89 0 0 chr9 107666680 107666736 -16409436 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 2 1406 376 276 10 10 chr9 107666881 107666980 -16409192 - PB1D10 SINE Alu -17 100 2 2 1406 764 249 169 0 chr9 107667015 107667192 -16408980 - B3 SINE B2 -9 207 1 2 1406 228 259 0 0 chr9 107667339 107667386 -16408786 + CT-rich Low_complexity Low_complexity 13 59 0 2 1406 1269 48 0 0 chr9 107667386 107667533 -16408639 - B1_Mus2 SINE Alu 0 147 1 2 1406 825 250 18 12 chr9 107668042 107668208 -16407964 - B3 SINE B2 -46 170 4 2 1406 1077 43 62 42 chr9 107668302 107668446 -16407726 + B1_Mus2 SINE Alu 1 147 0 2 1406 616 211 72 36 chr9 107668474 107668612 -16407560 + B3 SINE B2 2 144 -72 2 1406 324 49 0 0 chr9 107668689 107668730 -16407442 + B2_Mm2 SINE B2 1 41 -154 3 1406 1617 40 0 0 chr9 107668730 107668905 -16407267 + B2_Mm1t SINE B2 2 176 -17 3 1406 23 33 0 0 chr9 107668913 107668943 -16407229 + AT_rich Low_complexity Low_complexity 1 30 0 3 1406 899 145 0 0 chr9 107669023 107669161 -16407011 + B1_Mus2 SINE Alu 10 147 0 3 1406 1498 38 48 21 chr9 107669163 107669350 -16406822 + B2_Mm1a SINE B2 2 193 0 3 1406 302 250 29 0 chr9 107669390 107669458 -16406714 - BC1_Mm scRNA scRNA -82 70 1 3 1406 267 311 0 91 chr9 107669491 107669590 -16406582 + MT2B LTR ERVL 168 257 -344 3 1406 559 209 35 9 chr9 107669502 107669618 -16406554 + B1_Mur2 SINE Alu 15 133 -16 3 1406 305 199 106 40 chr9 107670217 107670301 -16405871 + B1F2 SINE Alu 1 89 -61 3 1406 241 292 121 21 chr9 107670535 107670675 -16405497 - MT2B2 LTR ERVL -237 347 194 3 1406 884 147 14 0 chr9 107670564 107670707 -16405465 - B1_Mur4 SINE Alu 0 150 6 3 1406 469 161 106 42 chr9 107671697 107671813 -16404359 - PB1D9 SINE Alu 0 120 1 3 1406 410 261 54 9 chr9 107673769 107673881 -16402291 + RSINE1 SINE B4 5 121 -44 3 1406 368 231 36 123 chr9 107674146 107674284 -16401888 - ID_B1 SINE B4 0 224 99 3 1406 367 261 65 65 chr9 107674486 107674505 -16401667 + MT2B LTR ERVL 148 166 -435 3 1406 571 171 125 9 chr9 107674505 107674617 -16401555 + B1_Mm SINE Alu 1 125 -22 3 1406 557 283 21 0 chr9 107674934 107675079 -16401093 + B3A SINE B2 29 176 -22 3 1406 1299 41 0 0 chr9 107675088 107675234 -16400938 + B1_Mus2 SINE Alu 1 146 -1 3 1406 1350 96 23 0 chr9 107675644 107675821 -16400351 - B2_Mm2 SINE B2 -14 181 1 3 1406 541 246 73 51 chr9 107676722 107676859 -16399313 + RSINE1 SINE B4 3 142 -23 3 1406 455 264 192 20 chr9 107677521 107677672 -16398500 + B3 SINE B2 2 178 -38 3 1406 898 234 70 0 chr9 107677727 107677928 -16398244 - B3 SINE B2 0 216 2 3 1406 1368 124 5 0 chr9 107678135 107678328 -16397844 - B2_Mm2 SINE B2 -1 194 1 3 1406 461 268 102 0 chr9 107678337 107678464 -16397708 - B1_Mur1 SINE Alu 0 149 10 3 1406 1466 74 21 5 chr9 107679004 107679195 -16396977 + B2_Mm2 SINE B2 2 195 0 3 1406 769 226 13 20 chr9 107679384 107679533 -16396639 + B1_Mus1 SINE Alu 1 148 0 3 1406 203 136 0 48 chr9 107679533 107679585 -16396587 + A-rich Low_complexity Low_complexity 10 58 0 3 1406 42 48 0 0 chr9 107679710 107679773 -16396399 + AT_rich Low_complexity Low_complexity 1 63 0 3 1406 309 259 86 0 chr9 107680459 107680540 -16395632 - PB1D10 SINE Alu -13 104 17 3 1406 416 305 9 19 chr9 107680559 107680666 -16395506 - PB1D7 SINE Alu -9 111 6 3 1406 820 168 0 7 chr9 107680698 107680836 -16395336 + B1_Mur2 SINE Alu 12 148 -1 3 1406 1173 75 14 0 chr9 107680839 107680985 -16395187 + B1_Mus1 SINE Alu 1 148 0 3 1406 840 48 0 0 chr9 107680986 107681091 -16395081 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1406 428 63 0 31 chr9 107681251 107681316 -16394856 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 3 1406 1193 55 0 27 chr9 107681316 107681466 -16394706 - B1_Mus2 SINE Alu 0 147 2 3 1406 27 29 0 0 chr9 107681591 107681625 -16394547 + AT_rich Low_complexity Low_complexity 1 34 0 3 1406 231 29 57 0 chr9 107682347 107682382 -16393790 + ORR1B2 LTR MaLR 1 37 -347 3 1406 310 185 34 80 chr9 107682363 107682451 -16393721 + ORR1B2 LTR MaLR 227 310 -57 3 1406 1183 63 0 34 chr9 107682470 107682617 -16393555 - B1_Mus2 SINE Alu -5 142 1 3 1406 1281 87 17 39 chr9 107682622 107682802 -16393370 - B2_Mm2 SINE B2 -19 176 1 3 1406 1169 126 86 0 chr9 107682834 107683008 -16393164 + B2_Mm2 SINE B2 2 190 -5 3 1406 304 102 122 0 chr9 107683036 107683085 -16393087 + ORR1B2 LTR MaLR 324 378 0 3 1406 663 240 94 6 chr9 107684126 107684306 -16391866 - B3 SINE B2 -12 204 9 3 1406 988 246 11 45 chr9 107684378 107684642 -16391530 + Lx6 LINE L1 7179 7433 -27 3 1406 441 331 52 33 chr9 107684688 107684841 -16391331 + RSINE1 SINE B4 6 161 -4 3 1406 341 370 7 36 chr9 107685426 107685566 -16390606 + RSINE1 SINE B4 1 136 -29 3 1406 201 39 0 0 chr9 107685580 107685606 -16390566 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1406 1287 79 90 0 chr9 107685616 107685793 -16390379 + B2_Mm1t SINE B2 1 193 0 3 1406 1049 38 0 8 chr9 107686487 107686620 -16389552 + B1_Mus2 SINE Alu 16 147 0 3 1406 186 71 0 0 chr9 107686620 107686648 -16389524 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1406 616 238 71 0 chr9 107686850 107686976 -16389196 + B1_Mus2 SINE Alu 3 137 -10 3 1406 1122 75 7 39 chr9 107687097 107687250 -16388922 + B1_Mus1 SINE Alu 1 148 0 3 1406 342 136 51 0 chr9 107687314 107687373 -16388799 + RSINE1 SINE B4 68 129 -36 3 1406 285 316 50 40 chr9 107687505 107687604 -16388568 + RSINE1 SINE B4 53 152 -13 3 1406 511 261 18 9 chr9 107687672 107687784 -16388388 - RSINE1 SINE B4 -50 115 3 3 1406 630 267 5 145 chr9 107688023 107688216 -16387956 - B3 SINE B2 0 216 51 3 1406 304 63 20 194 chr9 107688263 107688293 -16387879 - Lx2 LINE L1 0 6997 6974 3 1406 1300 130 11 5 chr9 107688293 107688478 -16387694 - B2_Mm2 SINE B2 -9 186 1 3 1406 304 63 20 194 chr9 107688478 107688545 -16387627 - Lx2 LINE L1 -24 6973 6917 3 1406 1092 227 5 19 chr9 107688569 107688589 -16387583 - B3 SINE B2 -4 212 195 3 1406 1657 37 10 16 chr9 107688589 107688783 -16387389 - B2_Mm1t SINE B2 0 193 1 3 1406 1092 227 5 19 chr9 107688783 107688973 -16387199 - B3 SINE B2 -22 194 5 3 1406 344 170 28 9 chr9 107689027 107689134 -16387038 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1406 708 185 14 43 chr9 107689142 107689283 -16386889 - B1_Mus1 SINE Alu -5 143 7 3 1406 565 211 45 30 chr9 107689332 107689464 -16386708 - B3 SINE B2 -81 135 2 3 1406 207 0 0 0 chr9 107690074 107690097 -16386075 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1406 1767 21 5 0 chr9 107690995 107691186 -16384986 + B2_Mm1t SINE B2 2 193 0 3 1406 419 247 0 3 chr9 107691327 107691451 -16384721 + B1F SINE Alu 1 149 0 3 1406 201 118 59 0 chr9 107691451 107691485 -16384687 + (TATG)n Simple_repeat Simple_repeat 3 38 0 3 1406 718 234 0 7 chr9 107691622 107691764 -16384408 - B1_Mur1 SINE Alu -8 141 1 3 1406 1205 89 0 0 chr9 107692158 107692304 -16383868 - B1_Mus1 SINE Alu 0 148 3 3 1406 685 235 44 0 chr9 107692338 107692474 -16383698 + B1_Mur3 SINE Alu 2 143 -6 3 1406 315 220 0 33 chr9 107692502 107692563 -16383609 + B1_Mus2 SINE Alu 1 59 -88 3 1406 310 294 0 0 chr9 107692563 107692655 -16383517 + GA-rich Low_complexity Low_complexity 1 92 0 3 1406 539 125 102 0 chr9 107692657 107692745 -16383427 + B1_Mur4 SINE Alu 41 137 -13 3 1406 423 0 0 0 chr9 107692745 107692792 -16383380 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 3 1406 1002 59 22 0 chr9 107692962 107693097 -16383075 - B1_Mus1 SINE Alu -5 143 6 3 1406 324 310 10 0 chr9 107693175 107693275 -16382897 - PB1D10 SINE Alu -16 101 1 3 1406 1827 21 0 0 chr9 107693641 107693834 -16382338 - B2_Mm1t SINE B2 0 193 1 3 1406 189 0 0 0 chr9 107693887 107693908 -16382264 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1406 696 291 64 0 chr9 107694479 107694682 -16381490 + B3 SINE B2 1 216 0 3 1406 272 306 111 56 chr9 107694688 107694868 -16381304 + B3A SINE B2 1 190 -5 3 1406 26 0 0 0 chr9 107694918 107694944 -16381228 + AT_rich Low_complexity Low_complexity 1 26 0 3 1406 5725 47 25 6 chr9 107694947 107695628 -16380544 + L1Md_F2 LINE L1 5886 6579 -3 3 1406 368 20 20 0 chr9 107695628 107695677 -16380495 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 1406 1368 92 49 0 chr9 107695677 107695861 -16380311 + B2_Mm2 SINE B2 2 194 -1 3 1406 501 254 0 63 chr9 107695861 107695986 -16380186 + PB1D9 SINE Alu 1 118 -2 3 1406 770 217 118 31 chr9 107696008 107696203 -16379969 + B3 SINE B2 1 212 -4 3 1406 231 36 0 0 chr9 107696211 107696239 -16379933 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1406 355 210 99 0 chr9 107696345 107696426 -16379746 + PB1D7 SINE Alu 31 119 -1 3 1406 391 204 109 30 chr9 107696469 107696570 -16379602 + ID_B1 SINE B4 114 222 -2 3 1406 626 200 8 34 chr9 107696552 107696671 -16379501 + B1F2 SINE Alu 17 132 -17 3 1406 560 200 138 0 chr9 107697355 107697485 -16378687 + B1_Mus1 SINE Alu 1 148 0 3 1406 1008 53 121 0 chr9 107697487 107697619 -16378553 + B1_Mus1 SINE Alu 1 148 0 3 1406 1557 50 28 0 chr9 107697629 107697810 -16378362 + B2_Mm1t SINE B2 1 186 -7 3 1406 386 256 22 11 chr9 107697890 107697981 -16378191 - B1_Mur2 SINE Alu -52 97 6 3 1406 286 340 189 25 chr9 107698041 107698279 -16377893 - B4 SINE B4 -11 281 5 3 1406 325 270 49 20 chr9 107698419 107698521 -16377651 - PB1D10 SINE Alu 0 117 13 3 1406 21 0 0 0 chr9 107698521 107698542 -16377630 + AT_rich Low_complexity Low_complexity 1 21 0 3 1406 800 270 5 30 chr9 107698542 107698744 -16377428 - B3A SINE B2 -1 197 1 3 1406 22 35 0 0 chr9 107698756 107698785 -16377387 + AT_rich Low_complexity Low_complexity 1 29 0 3 1406 294 274 133 14 chr9 107699056 107699204 -16376968 - L1MB8 LINE L1 -22 6157 5994 3 1406 283 133 0 22 chr9 107699256 107699302 -16376870 + B1_Mus2 SINE Alu 84 128 -19 3 1406 276 133 0 0 chr9 107699313 107699373 -16376799 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 3 1406 26 0 0 0 chr9 107699449 107699475 -16376697 + AT_rich Low_complexity Low_complexity 1 26 0 4 1406 515 195 26 26 chr9 107699489 107699605 -16376567 - PB1D9 SINE Alu 0 120 5 4 1406 243 169 0 0 chr9 107699694 107699724 -16376448 + A-rich Low_complexity Low_complexity 1 30 0 4 1406 1234 68 0 0 chr9 107699724 107699871 -16376301 + B1_Mus2 SINE Alu 1 147 0 4 1406 243 169 0 0 chr9 107699871 107699899 -16376273 + A-rich Low_complexity Low_complexity 31 58 0 4 1406 294 294 4 4 chr9 107700048 107700119 -16376053 + B1F1 SINE Alu 2 72 -55 4 1406 1003 137 0 20 chr9 107700159 107700308 -16375864 - B1_Mus1 SINE Alu 0 148 3 4 1406 279 203 0 30 chr9 107700381 107700447 -16375725 + L1MB3 LINE L1 6057 6120 -63 4 1406 930 224 68 110 chr9 107700547 107700778 -16375394 - MTE2a LTR MaLR -9 370 155 4 1406 819 147 57 29 chr9 107700778 107700918 -16375254 + B1_Mm SINE Alu 2 145 -2 4 1406 930 243 76 108 chr9 107700918 107701054 -16375118 - MTE2a LTR MaLR -233 186 46 4 1406 1005 221 33 14 chr9 107701054 107701265 -16374907 + B3 SINE B2 2 216 0 4 1406 287 269 14 29 chr9 107701300 107701369 -16374803 - ID4_ SINE ID -14 69 2 4 1406 703 266 167 39 chr9 107701391 107701649 -16374523 - B4 SINE B4 0 292 2 4 1406 260 303 31 107 chr9 107701719 107701878 -16374294 - B4A SINE B4 -64 228 82 4 1406 1595 242 51 22 chr9 107701885 107702276 -16373896 + MTD LTR MaLR 14 405 -14 4 1406 462 101 0 0 chr9 107702391 107702460 -16373712 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1406 613 206 22 51 chr9 107702633 107702771 -16373401 - B1_Mur4 SINE Alu -7 143 10 4 1406 297 51 0 0 chr9 107703693 107703732 -16372440 + (TGG)n Simple_repeat Simple_repeat 3 41 0 4 1406 277 266 163 8 chr9 107704377 107704506 -16371666 - MIRb SINE MIR -9 259 111 4 1406 579 221 26 0 chr9 107704770 107704883 -16371289 + B1F2 SINE Alu 25 140 -9 4 1406 207 69 0 0 chr9 107704885 107704914 -16371258 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 4 1406 667 269 35 7 chr9 107704915 107705057 -16371115 + RSINE1 SINE B4 1 146 -19 4 1406 1051 144 0 20 chr9 107705224 107705373 -16370799 - B1_Mus1 SINE Alu 0 148 3 4 1406 781 206 7 0 chr9 107705647 107705788 -16370384 - B1_Mus1 SINE Alu -6 142 1 4 1406 198 71 0 0 chr9 107705842 107705870 -16370302 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1406 213 398 8 66 chr9 107705884 107706005 -16370167 - PB1 SINE Alu -12 115 2 4 1406 503 229 85 54 chr9 107706500 107706631 -16369541 - PB1D9 SINE Alu -8 139 6 4 1406 313 250 28 103 chr9 107706539 107706646 -16369526 - MT2B LTR ERVL -351 250 152 4 1406 1900 121 98 18 chr9 107707716 107708044 -16368128 - ORR1B1 LTR MaLR 0 394 41 4 1406 1195 62 7 7 chr9 107708275 107708422 -16367750 - B1_Mus2 SINE Alu 0 147 1 4 1406 180 0 0 0 chr9 107708558 107708578 -16367594 + (CATA)n Simple_repeat Simple_repeat 1 20 0 4 1406 452 279 154 8 chr9 107708771 107708894 -16367278 - B3A SINE B2 -10 188 48 4 1406 232 254 36 32 chr9 107708891 107708984 -16367188 - B1F1 SINE Alu -21 96 1 4 1406 216 312 0 0 chr9 107708996 107709044 -16367128 + ID4_ SINE ID 30 77 -6 4 1406 413 213 60 90 chr9 107709202 107709336 -16366836 + B1_Mur1 SINE Alu 5 134 -15 4 1406 507 304 0 0 chr9 107709360 107709472 -16366700 + PB1D10 SINE Alu 1 112 -5 4 1406 351 206 0 29 chr9 107709775 107709845 -16366327 - ID4 SINE ID -12 71 4 4 1406 288 0 0 0 chr9 107709854 107709886 -16366286 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1406 642 306 28 0 chr9 107709890 107710034 -16366138 - RSINE1 SINE B4 -15 150 3 4 1406 1306 34 7 0 chr9 107710082 107710229 -16365943 - B1_Mus1 SINE Alu 0 148 1 4 1406 1274 147 160 32 chr9 107710415 107710697 -16365475 - Lx LINE L1 -2 6652 6335 4 1406 371 91 0 35 chr9 107710826 107710883 -16365289 - B2_Mm2 SINE B2 -94 101 47 4 1406 783 145 16 0 chr9 107710942 107711066 -16365106 - B2_Mm1t SINE B2 -66 127 2 4 1406 573 311 98 37 chr9 107711066 107711095 -16365077 - B4A SINE B4 -66 226 200 4 1406 906 182 7 7 chr9 107711095 107711244 -16364928 + B1_Mur4 SINE Alu 2 150 0 4 1406 573 311 98 37 chr9 107711244 107711425 -16364747 - B4A SINE B4 -93 199 3 4 1406 2165 112 16 6 chr9 107711505 107711821 -16364351 - ORR1A2 LTR MaLR -8 319 1 4 1406 320 279 69 11 chr9 107711821 107711908 -16364264 - ID_B1 SINE B4 -52 172 81 4 1406 1031 241 39 0 chr9 107711934 107712141 -16364031 - B3 SINE B2 -1 215 1 4 1406 195 204 0 0 chr9 107712148 107712192 -16363980 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 4 1406 701 230 15 0 chr9 107712217 107712352 -16363820 - B1_Mur2 SINE Alu -12 137 1 4 1406 420 274 12 0 chr9 107712620 107712704 -16363468 - RSINE1 SINE B4 -22 143 59 4 1406 243 250 262 0 chr9 107712733 107712813 -16363359 - ID_B1 SINE B4 -34 190 90 4 1406 180 0 0 0 chr9 107712855 107712875 -16363297 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1406 1120 117 0 0 chr9 107712875 107713037 -16363135 - B2_Mm2 SINE B2 -33 162 1 4 1406 293 198 157 65 chr9 107713204 107713312 -16362860 + PB1D9 SINE Alu 3 120 0 4 1406 968 318 166 9 chr9 107713377 107713806 -16362366 + Tigger7 DNA MER2_type 7 502 -1989 4 1406 514 145 31 46 chr9 107714129 107714246 -16361926 - B1_Mus1 SINE Alu 0 120 9 4 1406 333 236 53 40 chr9 107714324 107714399 -16361773 - ID4_ SINE ID -7 76 1 4 1406 496 206 18 81 chr9 107714579 107714690 -16361482 + B2_Mm2 SINE B2 43 146 -49 4 1406 237 65 0 0 chr9 107714703 107714734 -16361438 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1406 297 109 0 0 chr9 107714813 107714868 -16361304 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1406 475 282 35 14 chr9 107714979 107715123 -16361049 + B1F1 SINE Alu 1 147 -2 4 1406 235 225 169 0 chr9 107715306 107715377 -16360795 + B4 SINE B4 2 84 -208 4 1406 1119 90 0 7 chr9 107715751 107715897 -16360275 + B1_Mus2 SINE Alu 1 145 -2 4 1406 339 277 94 7 chr9 107715938 107716076 -16360096 - Kanga2_a DNA Tc2 -662 226 77 4 1406 1368 90 17 17 chr9 107716161 107716342 -16359830 + B2_Mm2 SINE B2 1 181 -14 4 1406 1211 88 0 0 chr9 107716352 107716499 -16359673 - B1_Mm SINE Alu 0 147 1 4 1406 716 114 19 0 chr9 107716533 107716638 -16359534 + B2_Mm2 SINE B2 1 107 -88 4 1406 213 72 70 23 chr9 107716638 107716681 -16359491 + A-rich Low_complexity Low_complexity 4 48 0 4 1406 264 196 0 18 chr9 107716841 107716898 -16359274 + B1_Mur4 SINE Alu 1 56 -94 4 1406 1071 166 68 84 chr9 107716889 107717050 -16359122 + RLTR20B3 LTR ERVK 294 471 -106 4 1406 342 0 0 0 chr9 107717050 107717088 -16359084 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1406 1071 166 68 84 chr9 107717088 107717176 -16358996 + RLTR20B3 LTR ERVK 472 539 -38 4 1406 26 0 0 0 chr9 107717308 107717334 -16358838 + AT_rich Low_complexity Low_complexity 1 26 0 4 1406 252 304 172 11 chr9 107717343 107717436 -16358736 + RSINE1 SINE B4 54 161 -4 4 1406 532 298 82 18 chr9 107717446 107717617 -16358555 + B3A SINE B2 3 184 -14 4 1406 451 225 135 0 chr9 107717650 107717761 -16358411 + B1_Mur2 SINE Alu 24 149 0 4 1406 469 268 148 8 chr9 107717841 107718097 -16358075 + L1MC LINE L1 2622 2913 -3233 4 1406 484 287 153 16 chr9 107718119 107718311 -16357861 + B3A SINE B2 1 216 0 4 1406 1001 93 43 14 chr9 107718319 107718460 -16357712 + B1_Mm SINE Alu 1 145 -2 4 1406 21 0 0 0 chr9 107718491 107718512 -16357660 + AT_rich Low_complexity Low_complexity 1 21 0 4 1406 625 195 0 17 chr9 107718517 107718637 -16357535 - PB1D9 SINE Alu -1 119 2 4 1406 1749 197 150 9 chr9 107718638 107719204 -16356968 + MTC-int LTR MaLR 195 960 -298 4 1406 249 57 0 0 chr9 107719204 107719239 -16356933 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1406 1257 55 0 7 chr9 107719241 107719388 -16356784 - B1_Mm SINE Alu 0 147 2 4 1406 1381 213 217 12 chr9 107719388 107719595 -16356577 + MTC-int LTR MaLR 961 1207 -51 4 1406 1075 38 0 8 chr9 107719595 107719729 -16356443 + B2_Mm2 SINE B2 3 135 -60 4 1406 203 146 24 0 chr9 107719740 107719781 -16356391 + GA-rich Low_complexity Low_complexity 2 43 0 4 1406 564 122 43 9 chr9 107719814 107719930 -16356242 + G-rich Low_complexity Low_complexity 1 120 0 4 1406 435 229 5 53 chr9 107719976 107720165 -16356007 + GA-rich Low_complexity Low_complexity 1 180 0 4 1406 248 164 0 141 chr9 107720167 107720252 -16355920 + MTC-int LTR MaLR 1186 1258 0 4 1406 1667 164 160 40 chr9 107720253 107720568 -16355604 + MTC LTR MaLR 2 364 -57 4 1406 1905 129 25 102 chr9 107720568 107720921 -16355251 - ORR1A4 LTR MaLR -3 326 1 4 1406 1667 164 160 40 chr9 107720921 107720980 -16355192 + MTC LTR MaLR 365 421 0 4 1406 498 221 329 0 chr9 107720989 107721147 -16355025 + B3 SINE B2 1 210 -6 4 1406 300 333 11 11 chr9 107721406 107721500 -16354672 + B1_Mm SINE Alu 5 98 -49 4 1406 287 268 0 0 chr9 107721520 107721591 -16354581 + L1MC LINE L1 4521 4591 -1555 4 1406 411 266 11 0 chr9 107721635 107721729 -16354443 - B3 SINE B2 -99 117 23 4 1406 351 0 0 0 chr9 107721843 107721882 -16354290 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1406 309 300 100 0 chr9 107721882 107721972 -16354200 - B1_Mur4 SINE Alu -2 148 50 4 1406 558 239 97 0 chr9 107721974 107722108 -16354064 - B1_Mur2 SINE Alu 0 149 3 4 1406 396 333 58 54 chr9 107722180 107722367 -16353805 + L1M5 LINE L1 4644 4829 -1317 4 1406 242 29 29 0 chr9 107722367 107722402 -16353770 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1406 1236 109 38 0 chr9 107722411 107722595 -16353577 + B2_Mm2 SINE B2 2 192 -3 4 1406 396 333 58 54 chr9 107722595 107722657 -16353515 + L1M5 LINE L1 4839 4904 -1242 4 1406 507 237 17 34 chr9 107722682 107722800 -16353372 - B1F SINE Alu 0 149 34 4 1406 1013 289 14 47 chr9 107723267 107723543 -16352629 + B4A SINE B4 10 276 -16 4 1406 414 100 0 0 chr9 107723667 107723727 -16352445 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 5 1406 322 305 56 63 chr9 107724107 107724233 -16351939 + 7SK RNA RNA 114 238 -93 5 1406 531 270 83 49 chr9 107724245 107724458 -16351714 + B4A SINE B4 1 217 -7 5 1406 329 324 105 0 chr9 107724488 107724593 -16351579 + B3A SINE B2 46 161 -37 5 1406 423 0 0 0 chr9 107724608 107724655 -16351517 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1406 189 0 0 0 chr9 107724661 107724682 -16351490 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1406 213 290 56 143 chr9 107724682 107724696 -16351476 + B4 SINE B4 79 142 -150 5 1406 501 185 117 20 chr9 107724696 107724828 -16351344 + B1_Mur2 SINE Alu 4 149 0 5 1406 213 290 56 143 chr9 107724828 107724843 -16351329 + B4 SINE B4 143 225 -67 5 1406 415 289 8 40 chr9 107725107 107725233 -16350939 - MLT1A1 LTR MaLR -16 392 271 5 1406 1080 52 0 0 chr9 107725422 107725556 -16350616 - B1_Mus2 SINE Alu -1 146 13 5 1406 474 237 77 84 chr9 107725456 107725599 -16350573 - MT2B LTR ERVL -337 264 123 5 1406 411 242 416 0 chr9 107725628 107725777 -16350395 - B3 SINE B2 -5 211 1 5 1406 947 255 10 5 chr9 107725921 107726122 -16350050 - B3 SINE B2 -6 210 9 5 1406 1074 213 228 0 chr9 107726196 107726464 -16349708 + MTD LTR MaLR 91 419 0 5 1406 1479 64 5 0 chr9 107726508 107726696 -16349476 + B2_Mm1t SINE B2 1 189 -4 5 1406 189 0 0 0 chr9 107726802 107726823 -16349349 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 1406 478 275 69 48 chr9 107726944 107727076 -16349096 + B1_Mur3 SINE Alu 1 136 -13 5 1406 501 185 235 0 chr9 107727076 107727195 -16348977 + B1_Mus2 SINE Alu 1 147 0 5 1406 478 275 69 48 chr9 107727195 107727207 -16348965 + B1_Mur3 SINE Alu 137 148 -1 5 1406 712 194 33 0 chr9 107727478 107727657 -16348515 + B3 SINE B2 1 192 -3 5 1406 1148 183 5 19 chr9 107727819 107728031 -16348141 + B3 SINE B2 2 210 -6 5 1406 204 40 0 0 chr9 107728031 107728056 -16348116 + (CAA)n Simple_repeat Simple_repeat 2 26 0 5 1406 369 320 19 0 chr9 107728072 107728175 -16347997 + ID_B1 SINE B4 108 212 -12 5 1406 1153 51 0 0 chr9 107728204 107728341 -16347831 - B1_Mus1 SINE Alu -11 137 1 5 1406 602 307 20 0 chr9 107728397 107728550 -16347622 + RSINE1 SINE B4 6 161 -4 5 1406 478 248 66 22 chr9 107729166 107729302 -16346870 + B1_Mur1 SINE Alu 2 143 -6 5 1406 449 316 26 32 chr9 107729419 107729573 -16346599 + RSINE1 SINE B4 3 155 -10 5 1406 758 161 108 0 chr9 107729871 107729996 -16346176 + B1_Mus1 SINE Alu 2 140 -8 5 1406 189 74 0 0 chr9 107729996 107730023 -16346149 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1406 757 182 22 7 chr9 107730034 107730172 -16346000 + B1_Mus1 SINE Alu 1 140 -8 5 1406 209 200 0 0 chr9 107730188 107730238 -16345934 + A-rich Low_complexity Low_complexity 1 50 0 5 1406 1078 57 57 0 chr9 107730503 107730643 -16345529 + B1_Mus1 SINE Alu 1 148 0 5 1406 731 216 7 0 chr9 107730677 107730816 -16345356 + B1_Mur1 SINE Alu 3 142 -7 5 1406 188 315 53 59 chr9 107731789 107731941 -16344231 + L2a LINE L2 3226 3376 -50 5 1406 662 264 77 166 chr9 107732015 107732497 -16343675 + RLTR12B LTR ERVK 47 485 -43 5 1406 525 271 13 114 chr9 107732938 107733096 -16343076 - RSINE1 SINE B4 -21 144 3 5 1406 372 255 73 28 chr9 107733169 107733278 -16342894 - PB1D10 SINE Alu -1 116 3 5 1406 276 270 40 0 chr9 107733665 107733739 -16342433 - ID4_ SINE ID -2 81 5 5 1406 549 220 18 9 chr9 107733825 107733935 -16342237 + B1_Mur1 SINE Alu 1 111 -38 5 1406 1203 219 86 41 chr9 107734181 107734472 -16341700 + MTD LTR MaLR 116 419 0 5 1406 570 307 0 28 chr9 107734472 107734613 -16341559 + B1F SINE Alu 12 148 -1 5 1406 540 213 56 0 chr9 107734691 107734799 -16341373 + PB1D9 SINE Alu 1 114 -6 5 1406 318 135 39 0 chr9 107737013 107737065 -16339107 + B1_Mur4 SINE Alu 90 143 -7 5 1406 402 336 10 0 chr9 107737175 107737279 -16338893 + PB1D10 SINE Alu 6 110 -7 5 1406 773 241 77 25 chr9 107737287 107737483 -16338689 + B3 SINE B2 2 207 -9 5 1406 2085 74 6 16 chr9 107737687 107738002 -16338170 + RLTR19-int LTR ERVK 1705 2016 -4121 5 1406 641 150 78 17 chr9 107738107 107738222 -16337950 - B1_Mur3 SINE Alu -17 132 11 5 1406 507 152 43 21 chr9 107738209 107738303 -16337869 - B1_Mur4 SINE Alu -32 118 23 5 1406 216 283 119 28 chr9 107738213 107738322 -16337850 - B4 SINE B4 -94 198 80 5 1406 586 306 0 7 chr9 107738315 107738460 -16337712 - B1_Mur2 SINE Alu -5 144 1 5 1406 407 171 9 28 chr9 107738659 107738767 -16337405 + (TA)n Simple_repeat Simple_repeat 2 107 0 5 1406 22 0 0 0 chr9 107739353 107739375 -16336797 + AT_rich Low_complexity Low_complexity 1 22 0 5 1406 261 340 54 24 chr9 107739475 107739641 -16336531 - MIR SINE MIR -7 255 85 5 1406 798 143 19 45 chr9 107739910 107740064 -16336108 - B1_Mur4 SINE Alu 0 150 1 5 1406 527 212 9 26 chr9 107740064 107740180 -16335992 - RSINE1 SINE B4 -45 120 7 5 1406 24 53 0 0 chr9 107740195 107740233 -16335939 + AT_rich Low_complexity Low_complexity 1 38 0 5 1406 316 263 21 0 chr9 107740297 107740392 -16335780 - Lx9 LINE L1 -153 7491 7395 5 1406 306 286 27 45 chr9 107740456 107740566 -16335606 - PB1D10 SINE Alu 0 117 10 5 1406 435 245 48 19 chr9 107740579 107740683 -16335489 - B1F1 SINE Alu -38 111 5 5 1406 250 273 0 29 chr9 107740626 107740694 -16335478 - B4A SINE B4 -147 145 80 5 175 1290 240 52 31 chr9 107741067 107741416 -16334756 + MamRep137 DNA TcMar? 15 370 -74 5 1407 421 314 66 0 chr9 107741983 107742104 -16334068 + RSINE1 SINE B4 18 146 -19 5 1407 193 167 37 0 chr9 107742111 107742165 -16334007 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1407 396 253 33 118 chr9 107742602 107742729 -16333443 - B3A SINE B2 -50 145 29 5 1407 240 206 162 0 chr9 107742730 107742816 -16333356 - B1_Mur2 SINE Alu -8 141 2 5 1407 24 32 0 0 chr9 107742862 107742893 -16333279 + AT_rich Low_complexity Low_complexity 1 31 0 5 1407 678 186 77 8 chr9 107742963 107743093 -16333079 + B1_Mus2 SINE Alu 3 141 -6 5 1407 205 209 15 15 chr9 107743095 107743163 -16333009 + GA-rich Low_complexity Low_complexity 3 70 0 5 1407 426 142 32 4 chr9 107743197 107743290 -16332882 + B1_Mus2 SINE Alu 33 132 -18 5 1407 23 0 0 0 chr9 107743497 107743520 -16332652 + AT_rich Low_complexity Low_complexity 1 23 0 5 1407 893 81 0 0 chr9 107743520 107743643 -16332529 - B1_Mus2 SINE Alu 0 147 25 5 1407 335 319 20 61 chr9 107744009 107744156 -16332016 - B1F SINE Alu 0 149 9 5 1407 223 253 118 13 chr9 107744652 107744728 -16331444 + L2b LINE L2 3274 3357 -18 5 1407 287 257 28 14 chr9 107744747 107744818 -16331354 + B3 SINE B2 139 210 -6 5 1407 435 259 93 17 chr9 107744998 107745116 -16331056 + B1_Mm SINE Alu 7 133 -14 5 1407 198 0 0 0 chr9 107745152 107745174 -16330998 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1407 459 103 535 42 chr9 107745375 107745517 -16330655 - B3 SINE B2 -4 212 1 5 1407 328 264 20 0 chr9 107745523 107745607 -16330565 + B3 SINE B2 37 123 -72 5 1407 576 246 48 16 chr9 107745618 107745742 -16330430 - B1_Mur4 SINE Alu -21 129 2 5 1407 338 313 52 9 chr9 107745742 107745851 -16330321 + B3 SINE B2 92 205 -11 5 1407 495 270 131 40 chr9 107745875 107746040 -16330132 - L1MB5 LINE L1 -76 6107 5917 5 1407 982 102 0 7 chr9 107746040 107746178 -16329994 + B1_Mus2 SINE Alu 2 138 -9 5 1407 261 0 0 0 chr9 107746178 107746207 -16329965 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1407 495 262 145 48 chr9 107746207 107746318 -16329854 - L1MB5 LINE L1 -258 5916 5800 5 1407 432 258 29 57 chr9 107747089 107747229 -16328943 - B3 SINE B2 0 216 81 5 1407 643 141 13 0 chr9 107747257 107747358 -16328814 + B1_Mur3 SINE Alu 36 146 -3 5 1407 194 0 39 0 chr9 107747362 107747388 -16328784 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1407 652 197 80 7 chr9 107747831 107747969 -16328203 + B1_Mus1 SINE Alu 1 148 0 5 1407 216 103 26 0 chr9 107747970 107748009 -16328163 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 5 1407 1272 78 62 0 chr9 107748012 107748191 -16327981 + B2_Mm2 SINE B2 2 191 -4 5 1407 568 220 18 0 chr9 107748468 107748577 -16327595 - PB1D9 SINE Alu -1 119 9 5 1407 907 253 97 32 chr9 107748658 107748968 -16327204 + Lx6 LINE L1 7105 7434 -26 5 1407 1168 54 0 39 chr9 107749981 107750134 -16326038 + B1_Mus2 SINE Alu 1 147 0 5 1407 208 139 0 0 chr9 107750134 107750170 -16326002 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1407 276 306 15 12 chr9 107750170 107750256 -16325916 + ID4_ SINE ID 7 89 -63 5 1407 620 231 3 13 chr9 107750502 107750642 -16325530 + B1_Mus1 SINE Alu 6 138 -11 5 1407 243 0 0 0 chr9 107750642 107750669 -16325503 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1407 22 0 0 0 chr9 107750734 107750756 -16325416 + AT_rich Low_complexity Low_complexity 1 22 0 5 1407 933 156 0 0 chr9 107750994 107751135 -16325037 - B1_Mus2 SINE Alu -4 143 3 5 1407 315 0 0 0 chr9 107751172 107751207 -16324965 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1407 1124 95 0 0 chr9 107751515 107751663 -16324509 + B1_Mus1 SINE Alu 1 148 0 5 1407 432 0 0 0 chr9 107751668 107751716 -16324456 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 5 1407 213 283 69 20 chr9 107751962 107752063 -16324109 + MIR SINE MIR 126 231 -31 5 1407 571 214 95 0 chr9 107752152 107752278 -16323894 - B1F2 SINE Alu -11 138 1 6 1407 591 224 52 7 chr9 107752667 107752802 -16323370 - B1F SINE Alu -8 141 1 6 1407 245 342 39 52 chr9 107752940 107753017 -16323155 - PB1 SINE Alu -50 77 2 6 1407 250 368 26 0 chr9 107752948 107753024 -16323148 - ID_B1 SINE B4 -71 153 76 6 1407 401 289 8 34 chr9 107753071 107753189 -16322983 - PB1D10 SINE Alu 0 117 3 6 1407 1375 89 21 0 chr9 107753573 107753764 -16322408 + B2_Mm2 SINE B2 1 195 0 6 1407 911 131 15 0 chr9 107753785 107753922 -16322250 + B1_Mus1 SINE Alu 10 148 0 6 1407 441 294 29 29 chr9 107756183 107756323 -16319849 - B1F SINE Alu -8 141 2 6 1407 796 223 85 5 chr9 107756799 107756988 -16319184 + B3 SINE B2 1 204 -12 6 1407 805 176 7 39 chr9 107757004 107757146 -16319026 + B1_Mur4 SINE Alu 1 138 -12 6 1407 203 61 30 0 chr9 107757146 107757179 -16318993 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1407 805 176 7 39 chr9 107757179 107757190 -16318982 + B1_Mur4 SINE Alu 139 149 -1 6 1407 193 186 210 48 chr9 107757243 107757305 -16318867 + L4 LINE RTE 1522 1593 -436 6 1407 488 303 45 0 chr9 107757757 107757889 -16318283 - B4A SINE B4 -2 290 153 6 1407 467 186 14 28 chr9 107758527 107758641 -16317531 + B1_Mur1 SINE Alu 2 146 -3 6 1407 229 268 54 0 chr9 107758809 107758865 -16317307 + 4.5SRNA scRNA scRNA 31 89 -5 6 1407 460 180 57 48 chr9 107758820 107758925 -16317247 + B1_Mur2 SINE Alu 44 149 0 6 1407 469 221 74 0 chr9 107758945 107759040 -16317132 + B1F2 SINE Alu 27 128 -21 6 1407 263 269 0 15 chr9 107759025 107759093 -16317079 + PB1D10 SINE Alu 31 97 -20 6 1407 420 224 71 10 chr9 107759124 107759223 -16316949 + PB1D7 SINE Alu 1 105 -15 6 1407 231 36 0 0 chr9 107759245 107759273 -16316899 + (AGGGGG)n Simple_repeat Simple_repeat 2 29 0 6 1407 199 95 0 67 chr9 107759274 107759319 -16316853 + A-rich Low_complexity Low_complexity 2 43 0 6 1407 470 172 86 94 chr9 107759326 107759454 -16316718 + B1_Mur3 SINE Alu 23 149 0 6 1407 1034 58 58 0 chr9 107759523 107759662 -16316510 + B1_Mus1 SINE Alu 2 148 0 6 1407 859 284 29 0 chr9 107759735 107759902 -16316270 + B3 SINE B2 3 171 -45 6 1407 519 45 0 0 chr9 107759902 107759968 -16316204 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1407 859 284 29 0 chr9 107759968 107760008 -16316164 + B3 SINE B2 172 215 -1 6 1407 846 179 14 7 chr9 107760029 107760170 -16316002 + B1_Mus2 SINE Alu 6 147 0 6 1407 1210 118 43 0 chr9 107760174 107760361 -16315811 + B2_Mm2 SINE B2 1 195 0 6 1407 22 0 0 0 chr9 107760510 107760532 -16315640 + AT_rich Low_complexity Low_complexity 1 22 0 6 1407 582 236 40 16 chr9 107760588 107760713 -16315459 - B1_Mur2 SINE Alu -1 148 21 6 1407 414 349 6 51 chr9 107760710 107760867 -16315305 - MER58B DNA MER1_type -8 333 184 6 1407 738 181 22 7 chr9 107760905 107761044 -16315128 + B3 SINE B2 70 210 -6 6 1407 292 366 10 0 chr9 107761152 107761253 -16314919 + B3A SINE B2 84 185 -13 6 1407 369 0 0 0 chr9 107761452 107761493 -16314679 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1407 23 0 0 0 chr9 107761837 107761860 -16314312 + AT_rich Low_complexity Low_complexity 1 23 0 6 1407 733 197 23 0 chr9 107761863 107761995 -16314177 + B1_Mus2 SINE Alu 2 136 -11 6 1407 499 308 28 7 chr9 107762003 107762147 -16314025 + RSINE1 SINE B4 2 148 -17 6 1407 499 29 29 0 chr9 107762166 107762235 -16313937 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 6 1407 617 174 0 52 chr9 107762254 107762369 -16313803 + B1_Mur2 SINE Alu 1 109 -40 6 1407 277 290 0 0 chr9 107762384 107762453 -16313719 + ID2 SINE ID 1 69 -14 6 1407 470 292 45 30 chr9 107762920 107763054 -16313118 + RSINE1 SINE B4 1 136 -29 6 1407 23 33 0 0 chr9 107763056 107763086 -16313086 + AT_rich Low_complexity Low_complexity 1 30 0 6 1407 466 229 55 0 chr9 107763087 107763196 -16312976 + PB1D9 SINE Alu 1 115 -5 6 1407 625 262 82 14 chr9 107763209 107763356 -16312816 + RSINE1 SINE B4 9 165 0 6 1407 25 31 0 0 chr9 107763357 107763389 -16312783 + AT_rich Low_complexity Low_complexity 1 32 0 6 1407 669 211 0 53 chr9 107763399 107763549 -16312623 + B1_Mus1 SINE Alu 1 142 -6 6 1407 28 0 0 0 chr9 107763693 107763721 -16312451 + AT_rich Low_complexity Low_complexity 1 28 0 6 1407 301 340 46 65 chr9 107763830 107764036 -16312136 + MLT1K LTR MaLR 68 289 -306 6 1407 213 39 0 0 chr9 107764152 107764178 -16311994 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 1407 537 287 18 42 chr9 107764263 107764430 -16311742 + RSINE1 SINE B4 3 165 0 6 1407 356 313 141 7 chr9 107764461 107764596 -16311576 + RSINE1 SINE B4 3 155 -10 6 1407 1159 68 0 0 chr9 107764674 107764821 -16311351 + B1_Mus1 SINE Alu 2 148 0 6 1407 234 280 51 39 chr9 107765045 107765123 -16311049 + MT2B LTR ERVL 158 236 -365 6 1407 424 221 95 0 chr9 107765065 107765160 -16311012 + PB1D9 SINE Alu 15 118 -2 6 1407 335 248 19 67 chr9 107765388 107765492 -16310680 - ID_B1 SINE B4 -46 178 80 6 1407 379 285 58 0 chr9 107765537 107765674 -16310498 - B1F SINE Alu -4 145 1 6 1407 405 272 39 23 chr9 107765676 107765804 -16310368 - ID_B1 SINE B4 -2 222 93 6 1407 2398 82 78 14 chr9 107766057 107766338 -16309834 + L1Md_F2 LINE L1 6199 6477 -105 6 1407 180 0 0 0 chr9 107766338 107766358 -16309814 + (G)n Simple_repeat Simple_repeat 1 20 0 6 1407 2398 82 78 14 chr9 107766358 107766436 -16309736 + L1Md_F2 LINE L1 6478 6579 -3 6 1407 474 254 26 9 chr9 107766647 107766762 -16309410 + ID_B1 SINE B4 80 196 -28 6 1407 242 296 0 0 chr9 107766814 107766868 -16309304 + B1F1 SINE Alu 13 66 -83 6 1407 568 239 13 78 chr9 107766993 107767147 -16309025 + RSINE1 SINE B4 10 153 -12 6 1407 491 66 13 0 chr9 107767147 107767223 -16308949 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 6 1407 210 328 0 90 chr9 107767227 107767294 -16308878 - B1_Mur4 SINE Alu -84 66 6 6 1407 195 42 0 0 chr9 107767295 107767319 -16308853 + (CCA)n Simple_repeat Simple_repeat 1 24 0 6 1407 360 0 0 0 chr9 107767327 107767367 -16308805 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 6 1407 1198 55 7 0 chr9 107767444 107767589 -16308583 + B1_Mus2 SINE Alu 1 146 -1 6 1407 417 288 71 7 chr9 107767642 107767782 -16308390 + B1F SINE Alu 1 149 0 6 1407 691 233 227 0 chr9 107767787 107767963 -16308209 + B3 SINE B2 1 216 0 6 1407 1401 0 0 17 chr9 107768202 107768374 -16307798 + (TGG)n Simple_repeat Simple_repeat 2 170 0 6 1407 721 125 15 52 chr9 107768374 107768509 -16307663 + B1_Mur4 SINE Alu 19 148 -2 6 1407 270 0 0 0 chr9 107768523 107768553 -16307619 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 6 1407 396 288 73 27 chr9 107768587 107768737 -16307435 + RSINE1 SINE B4 2 158 -7 6 1407 21 0 0 0 chr9 107768737 107768758 -16307414 + AT_rich Low_complexity Low_complexity 1 21 0 6 1407 983 41 0 0 chr9 107768768 107768889 -16307283 + B1_Mus1 SINE Alu 1 121 -27 6 1407 674 281 47 0 chr9 107768904 107769075 -16307097 + B3 SINE B2 38 216 0 6 1407 272 224 35 0 chr9 107769085 107769143 -16307029 + ID_B1 SINE B4 161 220 -4 6 1407 437 173 0 47 chr9 107769141 107769226 -16306946 + B1_Mur3 SINE Alu 68 148 -1 6 1407 729 226 8 0 chr9 107769344 107769477 -16306695 + B3 SINE B2 83 216 0 6 1407 258 182 176 29 chr9 107769478 107769614 -16306558 + RMER17B LTR ERVK 304 459 -499 6 1407 1146 76 0 0 chr9 107769687 107769831 -16306341 + B1_Mus1 SINE Alu 4 147 -1 6 1407 690 180 0 15 chr9 107769880 107770010 -16306162 + B3 SINE B2 89 216 0 6 1407 331 241 78 125 chr9 107770068 107770196 -16305976 - B4 SINE B4 0 292 171 6 1407 631 197 41 81 chr9 107770228 107770449 -16305723 - L1M3 LINE L1 -359 5824 5613 6 1407 473 210 19 39 chr9 107770454 107770558 -16305614 - PB1D7 SINE Alu -8 112 11 6 1407 307 237 49 49 chr9 107770553 107770655 -16305517 + PB1D7 SINE Alu 19 120 0 6 1407 440 303 0 47 chr9 107770670 107770819 -16305353 + B1F SINE Alu 1 142 -7 6 1407 41 48 0 0 chr9 107770821 107770883 -16305289 + AT_rich Low_complexity Low_complexity 1 62 0 6 1407 670 223 115 135 chr9 107771178 107771370 -16304802 + B3A SINE B2 2 189 -6 6 1407 443 249 106 30 chr9 107771380 107771711 -16304461 + L1MB4 LINE L1 5783 6161 -22 6 1407 246 287 147 10 chr9 107771717 107771768 -16304404 + PB1D10 SINE Alu 1 112 -1 6 1407 257 213 0 0 chr9 107771768 107771815 -16304357 + ID_B1 SINE B4 174 220 -4 6 1407 265 136 317 12 chr9 107771822 107771904 -16304268 + PB1D10 SINE Alu 2 108 -9 6 1407 646 258 132 19 chr9 107771916 107772118 -16304054 + B4A SINE B4 4 229 -63 6 1407 503 250 67 33 chr9 107772118 107772238 -16303934 + RSINE1 SINE B4 2 125 -40 6 1407 295 242 0 0 chr9 107772329 107772391 -16303781 - MIRb SINE MIR -9 259 198 6 1407 1174 22 0 0 chr9 107772409 107772545 -16303627 + B1_Mus1 SINE Alu 2 137 -11 6 1407 287 347 42 0 chr9 107772564 107772659 -16303513 + ID_B1 SINE B4 4 102 -122 6 1407 229 308 115 55 chr9 107772708 107772873 -16303299 - MIRb SINE MIR -86 182 8 6 1407 677 241 7 0 chr9 107772907 107773052 -16303120 + B1_Mur1 SINE Alu 3 148 -1 6 1407 1035 78 35 7 chr9 107773065 107773207 -16302965 + B1_Mus2 SINE Alu 1 146 -1 6 1407 243 311 100 0 chr9 107773867 107773957 -16302215 - PB1D10 SINE Alu -17 100 2 6 1407 22 0 0 0 chr9 107774756 107774778 -16301394 + GC_rich Low_complexity Low_complexity 1 22 0 7 1407 707 239 77 83 chr9 107775983 107776152 -16300020 + B3 SINE B2 6 173 -22 7 1407 619 232 0 0 chr9 107776197 107776322 -16299850 + B1_Mus2 SINE Alu 5 129 -18 7 1407 2245 114 9 0 chr9 107776325 107776641 -16299531 + ORR1A2 LTR MaLR 1 319 -8 7 1407 9531 132 44 87 chr9 107776645 107777763 -16298409 + ORR1A2-int LTR MaLR 1 1042 -921 7 1407 707 0 12 0 chr9 107777763 107777846 -16298326 + (GAA)n Simple_repeat Simple_repeat 3 86 0 7 1407 9531 134 44 83 chr9 107777846 107778770 -16297402 + ORR1A2-int LTR MaLR 1043 1963 0 7 1407 1961 108 42 19 chr9 107778770 107779082 -16297090 + ORR1A2 LTR MaLR 1 319 -8 7 1407 201 121 0 0 chr9 107779095 107779128 -16297044 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 7 1407 483 162 0 0 chr9 107779154 107779234 -16296938 + B1_Mur3 SINE Alu 69 148 -1 7 1407 234 309 164 0 chr9 107779236 107779346 -16296826 - ID_B1 SINE B4 -12 212 85 7 1407 593 235 91 113 chr9 107779428 107779591 -16296581 - B3 SINE B2 0 216 57 7 1407 1057 61 7 13 chr9 107779591 107779740 -16296432 - B1_Mus1 SINE Alu 0 148 1 7 1407 593 235 91 113 chr9 107779740 107779797 -16296375 - B3 SINE B2 -160 56 1 7 1407 922 258 19 14 chr9 107779822 107780034 -16296138 - B4A SINE B4 -73 219 7 7 1407 874 210 38 57 chr9 107780074 107780286 -16295886 + B3 SINE B2 2 209 -7 7 1407 592 136 171 9 chr9 107780436 107780547 -16295625 - B1_Mur2 SINE Alu -2 147 19 7 1407 1454 54 16 0 chr9 107780606 107780791 -16295381 + B2_Mm1a SINE B2 2 189 -4 7 1407 1065 144 22 6 chr9 107780799 107780981 -16295191 + B2_Mm2 SINE B2 11 195 0 7 1407 524 149 40 10 chr9 107781272 107781382 -16294790 - B1_Mur2 SINE Alu -18 129 19 7 1407 402 260 0 48 chr9 107781411 107781516 -16294656 - RLTR20C LTR ERVK 0 534 435 7 1407 1131 125 11 0 chr9 107781528 107781704 -16294468 + B2_Mm1t SINE B2 2 179 -14 7 1407 1135 185 3 121 chr9 107781781 107782088 -16294084 - RLTR20C LTR ERVK -263 271 1 7 1407 1099 75 7 0 chr9 107782176 107782322 -16293850 - B1_Mus2 SINE Alu 0 147 1 7 1407 751 167 14 20 chr9 107783056 107783203 -16292969 + B1_Mur3 SINE Alu 3 148 -1 7 1407 1329 79 0 11 chr9 107783235 107783426 -16292746 - B2_Mm2 SINE B2 -6 189 1 7 1407 759 249 264 82 chr9 107783428 107784044 -16292128 + RLTR42-int LTR ERVK 1163 1890 -3632 7 1407 1714 210 140 84 chr9 107784076 107784560 -16291612 + RMER20B LTR ERVK 1 532 -95 7 1407 1000 73 22 0 chr9 107784560 107784697 -16291475 - B1_Mus1 SINE Alu -7 141 2 7 1407 1714 210 140 84 chr9 107784697 107784785 -16291387 + RMER20B LTR ERVK 533 605 -22 7 1407 403 212 19 39 chr9 107784893 107784996 -16291176 + RLTR42-int LTR ERVK 1083 1183 -4954 7 1407 231 217 0 0 chr9 107785051 107785097 -16291075 - RMER21B LTR ERV1 -275 567 522 7 1407 331 300 30 10 chr9 107785394 107785495 -16290677 - RMER4B LTR ERVK -144 441 339 7 1407 392 194 20 51 chr9 107785497 107785595 -16290577 - RodERV21-int LTR ERV1 -169 4822 4728 7 1407 207 0 0 0 chr9 107785595 107785618 -16290554 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1407 1119 68 7 0 chr9 107785631 107785778 -16290394 + B1_Mus1 SINE Alu 1 148 0 7 1407 610 82 0 20 chr9 107785968 107786068 -16290104 + (GGGGA)n Simple_repeat Simple_repeat 4 101 0 7 1407 849 176 10 35 chr9 107786865 107787065 -16289107 + RLTR42-int LTR ERVK 1906 2100 -3422 7 1407 1004 52 59 0 chr9 107787074 107787209 -16288963 + B1_Mus1 SINE Alu 1 143 -5 7 1407 432 160 0 0 chr9 107787229 107787304 -16288868 + RLTR23 LTR ERV1 308 382 -48 7 1407 198 0 0 0 chr9 107787373 107787395 -16288777 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1407 688 73 282 0 chr9 107787395 107787505 -16288667 - B1_Mur4 SINE Alu -9 141 1 7 1407 283 268 41 0 chr9 107787673 107787770 -16288402 + B1F SINE Alu 44 144 -5 7 1407 180 0 0 0 chr9 107787850 107787870 -16288302 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1407 437 262 10 0 chr9 107787873 107787976 -16288196 - B1_Mur1 SINE Alu 0 149 46 7 1407 249 202 119 20 chr9 107788004 107788105 -16288067 + PB1D7 SINE Alu 9 119 -1 7 1407 206 32 0 31 chr9 107788285 107788317 -16287855 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 7 1407 1184 48 0 0 chr9 107788317 107788464 -16287708 - B1_Mus2 SINE Alu 0 147 1 7 1407 496 293 127 6 chr9 107788464 107788622 -16287550 + B4A SINE B4 28 204 -88 7 1407 281 300 26 60 chr9 107788525 107788642 -16287530 + B1_Mur1 SINE Alu 23 135 -14 7 1407 756 260 185 12 chr9 107788651 107788917 -16287255 - MTD LTR MaLR -15 404 102 7 1407 331 200 11 45 chr9 107789033 107789122 -16287050 - ID_B1 SINE B4 -53 171 86 7 1407 524 91 0 0 chr9 107789049 107789126 -16287046 - B1_Mus1 SINE Alu -71 77 1 7 1407 258 105 0 0 chr9 107789467 107789505 -16286667 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 1407 281 195 42 42 chr9 107789505 107789623 -16286549 - RMER17C LTR ERVK -112 298 181 7 1407 396 219 130 68 chr9 107789902 107790064 -16286108 + MER5B DNA MER1_type 1 172 -6 7 1407 300 374 122 22 chr9 107792863 107793175 -16282997 - L2 LINE L2 -434 2985 2643 7 1407 793 155 7 33 chr9 107793183 107793336 -16282836 + B1_Mur4 SINE Alu 2 150 0 7 1407 643 218 24 85 chr9 107793471 107793682 -16282490 - B3A SINE B2 0 198 1 7 1407 523 252 26 0 chr9 107793688 107793803 -16282369 - ID_B1 SINE B4 -1 223 106 7 1407 695 257 0 55 chr9 107793816 107793985 -16282187 - B3A SINE B2 -6 192 33 7 1407 345 62 0 0 chr9 107793985 107794033 -16282139 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 7 1407 695 257 0 55 chr9 107794033 107794065 -16282107 - B3A SINE B2 -166 32 2 7 1407 273 98 0 0 chr9 107794077 107794118 -16282054 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1407 265 314 0 14 chr9 107794128 107794199 -16281973 - B4 SINE B4 -9 283 214 7 1407 874 128 28 0 chr9 107794373 107794514 -16281658 - B1_Mur3 SINE Alu 0 149 5 7 1407 951 225 36 9 chr9 107794521 107794741 -16281431 - B4 SINE B4 -66 226 1 7 1407 220 240 112 65 chr9 107794834 107794941 -16281231 - PB1D9 SINE Alu 0 120 9 7 1407 297 280 0 57 chr9 107795186 107795292 -16280880 - ID_B1 SINE B4 0 224 125 7 1407 227 234 0 21 chr9 107795322 107795370 -16280802 - ID4_ SINE ID -32 51 5 7 1407 207 0 0 0 chr9 107795413 107795436 -16280736 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1407 806 156 7 0 chr9 107795438 107795579 -16280593 - B1_Mus2 SINE Alu -1 146 5 7 1407 486 143 60 35 chr9 107795605 107795721 -16280451 - PB1D9 SINE Alu -1 119 1 7 1407 880 266 43 53 chr9 107795837 107796119 -16280053 - B4 SINE B4 -4 288 10 7 1407 253 0 26 26 chr9 107796145 107796183 -16279989 + (TTA)n Simple_repeat Simple_repeat 2 39 0 7 1407 440 152 120 0 chr9 107796183 107796275 -16279897 - B1_Mur4 SINE Alu -1 149 47 7 1407 578 273 43 27 chr9 107796326 107796514 -16279658 - B3A SINE B2 -5 193 3 7 1407 334 265 103 29 chr9 107796586 107796722 -16279450 - B1F1 SINE Alu -2 147 2 7 1407 369 287 191 20 chr9 107796796 107797048 -16279124 - L2 LINE L2 -1036 2383 2089 7 1407 290 267 122 58 chr9 107797049 107797188 -16278984 + B1F SINE Alu 1 148 -1 7 1407 449 141 0 3 chr9 107797696 107797779 -16278393 - ORR1A2 LTR MaLR -1 373 254 7 1407 241 196 0 51 chr9 107797789 107797848 -16278324 + RLTR25A LTR ERVK 517 572 -531 7 1407 667 111 0 0 chr9 107797797 107797896 -16278276 + B1_Mus2 SINE Alu 48 146 -1 7 1407 348 269 38 19 chr9 107798007 107798113 -16278059 - PB1D10 SINE Alu 0 117 10 7 1407 194 83 0 53 chr9 107798125 107798163 -16278009 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 7 1407 206 200 0 0 chr9 107798207 107798242 -16277930 + C-rich Low_complexity Low_complexity 2 36 0 7 1407 593 167 0 26 chr9 107798428 107798545 -16277627 - B1_Mur4 SINE Alu -2 148 35 7 1407 1144 116 0 0 chr9 107798596 107798760 -16277412 - B2_Mm2 SINE B2 -31 164 1 7 1407 514 265 58 7 chr9 107798765 107798789 -16277383 - B1_Mur3 SINE Alu -1 148 125 7 1407 881 151 0 0 chr9 107798789 107798928 -16277244 + B1_Mus2 SINE Alu 1 139 -8 7 1407 514 265 58 7 chr9 107798928 107799040 -16277132 - B1_Mur3 SINE Alu -25 124 6 7 1407 277 368 29 41 chr9 107799040 107799063 -16277109 - B4A SINE B4 -87 205 67 7 1407 316 279 12 25 chr9 107799244 107799325 -16276847 - PB1D10 SINE Alu -6 111 32 7 1407 392 336 48 115 chr9 107799435 107799748 -16276424 + B4A SINE B4 1 292 0 7 1407 467 227 35 52 chr9 107799776 107799892 -16276280 - PB1D9 SINE Alu -1 119 6 7 1407 570 219 190 6 chr9 107799899 107800070 -16276102 - B3 SINE B2 -11 184 5 7 1407 216 0 0 0 chr9 107800085 107800109 -16276063 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1407 1104 64 0 0 chr9 107800109 107800249 -16275923 - B1_Mus1 SINE Alu -8 140 1 7 1407 519 192 112 0 chr9 107800292 107800417 -16275755 + B1_Mur2 SINE Alu 10 148 -1 7 1407 229 211 0 19 chr9 107800525 107800578 -16275594 + L1ME4a LINE L1 6072 6123 -1 7 1407 198 167 0 0 chr9 107800675 107800711 -16275461 + GA-rich Low_complexity Low_complexity 2 37 0 7 1407 303 330 10 10 chr9 107800719 107800823 -16275349 - PB1D10 SINE Alu -8 109 6 7 1407 730 168 76 0 chr9 107801408 107801539 -16274633 - B1_Mur4 SINE Alu -9 141 1 7 1407 396 237 19 109 chr9 107801586 107801742 -16274430 + B1F1 SINE Alu 1 142 -7 7 1407 252 0 0 0 chr9 107802911 107802939 -16273233 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 7 1407 382 211 115 79 chr9 107803195 107803334 -16272838 + ID_B1 SINE B4 79 222 -2 7 1407 992 98 55 1 chr9 107805509 107805677 -16270495 - B2_Mm2 SINE B2 -1 215 30 7 1407 387 159 43 0 chr9 107807588 107807657 -16268515 + U6 snRNA snRNA 36 107 0 7 1407 1368 77 0 10 chr9 107807693 107807889 -16268283 + B2_Mm2 SINE B2 1 194 -1 7 1407 560 147 2 143 chr9 107807910 107808064 -16268108 + B1_Mus1 SINE Alu 7 137 -12 8 1407 198 0 0 0 chr9 107808069 107808091 -16268081 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 8 1407 309 214 0 41 chr9 107811715 107811788 -16264384 - ID4 SINE ID -13 70 1 8 1407 287 242 52 21 chr9 107811812 107811909 -16264263 - B1F SINE Alu -8 141 42 8 1407 210 293 79 13 chr9 107812011 107812087 -16264085 - BC1_Mm scRNA scRNA -69 83 3 8 1407 579 234 35 21 chr9 107812104 107812248 -16263924 - B1F SINE Alu -1 148 3 8 1407 21 0 0 0 chr9 107812251 107812272 -16263900 + AT_rich Low_complexity Low_complexity 1 21 0 8 1407 24 0 0 0 chr9 107813302 107813326 -16262846 + AT_rich Low_complexity Low_complexity 1 24 0 8 1407 1308 23 123 0 chr9 107816213 107816384 -16259788 - B2_Mm1a SINE B2 -1 192 1 8 1407 334 373 74 6 chr9 107821129 107821291 -16254881 - LTR16A LTR ERVL -223 228 56 8 1407 214 351 53 0 chr9 107821328 107821422 -16254750 + MIRb SINE MIR 120 218 -50 8 1407 458 225 17 43 chr9 107821608 107821724 -16254448 - PB1D10 SINE Alu 0 117 5 8 1407 532 204 0 170 chr9 107821736 107821901 -16254271 - B1_Mur4 SINE Alu -1 149 13 8 1407 560 287 0 15 chr9 107821795 107821926 -16254246 - ID_B1 SINE B4 -26 198 70 8 1407 23 0 0 0 chr9 107822671 107822694 -16253478 + AT_rich Low_complexity Low_complexity 1 23 0 8 1407 1125 41 0 39 chr9 107824093 107824246 -16251926 + B1_Mus1 SINE Alu 1 147 -1 8 1407 300 111 0 0 chr9 107824251 107824296 -16251876 + (GAAA)n Simple_repeat Simple_repeat 3 47 0 8 1407 809 98 19 101 chr9 107824641 107824800 -16251372 - URR1A DNA MER1_type 0 226 81 8 1407 732 94 0 0 chr9 107825011 107825117 -16251055 + (TG)n Simple_repeat Simple_repeat 2 107 0 8 1407 427 314 0 0 chr9 107825302 107825404 -16250768 + ID_B1 SINE B4 81 182 -42 8 1407 418 274 13 34 chr9 107825303 107825438 -16250734 + PB1D10 SINE Alu 1 137 -11 8 1407 1354 85 32 0 chr9 107828190 107828379 -16247793 - B2_Mm2 SINE B2 0 195 1 8 1407 640 149 174 0 chr9 107828703 107828824 -16247348 - B1_Mur4 SINE Alu -8 142 1 8 1407 192 77 0 0 chr9 107829059 107829085 -16247087 + (TTGGGG)n Simple_repeat Simple_repeat 1 26 0 8 1407 260 137 0 19 chr9 107829102 107829154 -16247018 + (CACCC)n Simple_repeat Simple_repeat 1 51 0 8 1407 300 70 0 0 chr9 107835393 107835436 -16240736 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 8 1407 1004 86 50 0 chr9 107835576 107835715 -16240457 + B1_Mur4 SINE Alu 2 147 -3 8 1407 225 0 0 0 chr9 107835796 107835821 -16240351 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1407 461 363 11 64 chr9 107835826 107836011 -16240161 - B4 SINE B4 -14 278 105 8 1407 974 133 28 0 chr9 107836011 107836154 -16240018 - B1_Mur4 SINE Alu 0 150 4 8 1407 461 363 11 64 chr9 107836154 107836233 -16239939 - B4 SINE B4 -188 104 28 8 1407 31 58 0 0 chr9 107838161 107838213 -16237959 + GC_rich Low_complexity Low_complexity 1 52 0 8 1407 258 281 0 35 chr9 107842404 107842489 -16233683 - L1M5 LINE L1 -341 5783 5702 8 1407 607 254 8 0 chr9 107843786 107843912 -16232260 + ID_B1 SINE B4 96 222 -2 8 1407 231 36 0 0 chr9 107843991 107844019 -16232153 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1407 558 300 41 66 chr9 107844090 107844361 -16231811 - B4A SINE B4 0 292 29 8 1407 1228 68 0 0 chr9 107844380 107844527 -16231645 - B1_Mus1 SINE Alu 0 148 2 8 1407 825 136 42 14 chr9 107844596 107844738 -16231434 - B1_Mus1 SINE Alu -1 147 2 8 1407 278 82 0 0 chr9 107844865 107844914 -16231258 + B3 SINE B2 167 215 -1 8 1407 735 312 119 7 chr9 107844918 107845379 -16230793 - L1ME3B LINE L1 -64 6176 5664 8 1407 239 187 6 0 chr9 107845403 107845453 -16230719 - PB1 SINE Alu -5 144 72 8 1407 1083 204 39 0 chr9 107845513 107845719 -16230453 + B3 SINE B2 2 215 -1 8 1407 1225 42 0 0 chr9 107845725 107845868 -16230304 + B1_Mus2 SINE Alu 2 144 -3 8 1407 324 0 0 0 chr9 107845868 107845904 -16230268 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 8 1407 1016 141 0 20 chr9 107845906 107846058 -16230114 + B1_Mur4 SINE Alu 1 149 -1 8 1407 21 36 0 0 chr9 107846072 107846100 -16230072 + AT_rich Low_complexity Low_complexity 1 28 0 8 1407 579 248 16 0 chr9 107846145 107846274 -16229898 - ID_B1 SINE B4 -1 223 93 8 1407 374 298 49 21 chr9 107846274 107846289 -16229883 - B1_Mus1 SINE Alu 0 148 1 8 1407 552 250 35 28 chr9 107846373 107846517 -16229655 + Lx9 LINE L1 7263 7407 -237 8 1407 210 118 0 0 chr9 107846682 107846716 -16229456 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 8 1407 1222 68 0 0 chr9 107846722 107846870 -16229302 - B1_Mus1 SINE Alu 0 148 1 8 1407 501 236 9 9 chr9 107846875 107846982 -16229190 - PB1D7 SINE Alu -5 115 9 8 1407 252 305 134 61 chr9 107847009 107847173 -16228999 - B2_Mm2 SINE B2 -9 186 11 8 1407 535 279 62 0 chr9 107847053 107847182 -16228990 - RSINE1 SINE B4 -26 139 3 8 1407 547 234 16 0 chr9 107847197 107847321 -16228851 + B1_Mur2 SINE Alu 24 149 0 8 1407 251 312 0 0 chr9 107850147 107850259 -16225913 + (CTG)n Simple_repeat Simple_repeat 3 114 0 8 1407 1241 34 7 0 chr9 107853811 107853958 -16222214 + B1_Mus1 SINE Alu 1 148 0 8 1407 309 326 0 20 chr9 107854398 107854498 -16221674 + ID_B1 SINE B4 126 223 -1 8 1407 940 126 0 53 chr9 107854810 107854961 -16221211 - B1_Mus2 SINE Alu 0 147 5 8 1407 711 201 27 141 chr9 107854984 107855204 -16220968 - B3A SINE B2 -1 197 3 8 1407 275 284 52 21 chr9 107855221 107855318 -16220854 - PB1D10 SINE Alu -13 104 5 8 1407 585 227 0 25 chr9 107855401 107855523 -16220649 - PB1D7 SINE Alu -1 119 1 8 1407 642 290 109 0 chr9 107855539 107855722 -16220450 - ID_B1 SINE B4 -20 204 2 8 1407 1077 95 137 0 chr9 107855737 107855905 -16220267 - B2_Mm1t SINE B2 -1 192 2 8 1407 258 265 214 0 chr9 107855931 107856029 -16220143 - PB1D9 SINE Alu 0 120 2 8 1407 1464 274 59 18 chr9 107856029 107856591 -16219581 - L1MB4 LINE L1 -37 6143 5559 8 1407 252 190 0 0 chr9 107856596 107856675 -16219497 + CT-rich Low_complexity Low_complexity 2 80 0 8 1407 210 339 0 0 chr9 107856745 107856801 -16219371 - B1F SINE Alu -82 67 12 8 1407 696 87 0 2 chr9 107856878 107856988 -16219184 + B2_Mm2 SINE B2 2 109 -107 8 1407 216 0 0 0 chr9 107857003 107857027 -16219145 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 8 1407 247 313 0 0 chr9 107857038 107857105 -16219067 - L1ME3A LINE L1 -56 6117 6051 8 1407 292 289 22 22 chr9 107857115 107857207 -16218965 + ID4 SINE ID 2 93 -59 8 1407 1183 54 0 7 chr9 107857390 107857539 -16218633 - B1_Mus1 SINE Alu 0 148 1 8 1407 225 241 157 0 chr9 107857724 107857807 -16218365 - PB1D7 SINE Alu -19 101 6 8 1407 1029 69 53 0 chr9 107858837 107858968 -16217204 + B1_Mus1 SINE Alu 1 138 -10 8 1407 203 88 29 0 chr9 107858981 107859015 -16217157 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 8 1407 932 248 19 0 chr9 107860417 107860623 -16215549 + B3 SINE B2 1 210 -6 8 1407 728 198 86 40 chr9 107860628 107860802 -16215370 - B2_Mm2 SINE B2 -11 184 3 8 1407 872 170 0 45 chr9 107860841 107860995 -16215177 + B1_Mur2 SINE Alu 3 149 0 8 1407 444 230 0 0 chr9 107861931 107862018 -16214154 - PB1D9 SINE Alu -32 88 2 8 1407 288 300 63 9 chr9 107863115 107863157 -16213015 + PB1D10 SINE Alu 1 117 0 8 1407 341 232 29 0 chr9 107863157 107863226 -16212946 + ID_B1 SINE B4 153 223 -1 8 1407 680 234 32 25 chr9 107866049 107866241 -16209931 + B1_Mur4 SINE Alu 1 194 -120 8 1407 180 77 0 0 chr9 107866709 107866735 -16209437 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1407 341 281 0 10 chr9 107866739 107866843 -16209329 + (TATG)n Simple_repeat Simple_repeat 1 103 0 8 1407 487 290 50 25 chr9 107866851 107867010 -16209162 - RSINE1 SINE B4 0 165 3 8 1407 209 304 0 0 chr9 107868149 107868205 -16207967 - L2a LINE L2 -340 3086 3031 8 1407 525 60 217 0 chr9 107868595 107868678 -16207494 - B2_Mm2 SINE B2 -66 129 29 8 1407 957 250 9 22 chr9 107868700 107868925 -16207247 - ID_B1 SINE B4 0 224 3 8 1407 535 214 181 8 chr9 107869399 107869526 -16206646 - B1_Mur2 SINE Alu 0 149 1 8 1407 1181 96 90 0 chr9 107869683 107869860 -16206312 - B2_Mm2 SINE B2 -2 193 1 8 1407 260 279 166 35 chr9 107870071 107870216 -16205956 - B3 SINE B2 -1 215 52 8 1407 435 239 124 21 chr9 107870108 107870253 -16205919 - RSINE1 SINE B4 -4 161 2 8 1407 401 295 78 14 chr9 107870693 107870834 -16205338 - RSINE1 SINE B4 -13 152 3 8 1407 432 278 23 53 chr9 107871686 107871819 -16204353 - RSINE1 SINE B4 -34 131 3 8 1408 298 181 242 33 chr9 107872481 107872601 -16203571 + B1F SINE Alu 5 149 0 8 1408 1107 218 117 92 chr9 107874282 107874651 -16201521 + MTE2a LTR MaLR 2 379 0 8 1408 228 182 91 0 chr9 107874897 107874941 -16201231 + L1MB8 LINE L1 5912 5959 -219 8 1408 388 157 0 41 chr9 107875138 107875211 -16200961 - PB1D9 SINE Alu -17 103 34 8 1408 249 314 29 0 chr9 107875674 107875744 -16200428 + ID_B1 SINE B4 152 223 -1 8 1408 645 232 249 0 chr9 107875773 107875950 -16200222 + ID_B1 SINE B4 4 224 0 8 1408 1119 202 38 5 chr9 107875953 107876162 -16200010 + B3 SINE B2 1 216 0 9 1408 1210 54 0 13 chr9 107876166 107876315 -16199857 + B1_Mm SINE Alu 1 147 0 9 1408 246 95 0 0 chr9 107876315 107876357 -16199815 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1408 492 248 104 15 chr9 107876499 107876634 -16199538 + B1_Mur1 SINE Alu 2 148 -1 9 1408 532 184 27 9 chr9 107876662 107876772 -16199400 + PB1D9 SINE Alu 9 120 0 9 1408 1256 277 134 62 chr9 107876821 107877349 -16198823 + Lx8 LINE L1 6616 7181 -292 9 1408 248 386 0 10 chr9 107877369 107877471 -16198701 + RMER15 LTR ERVL 371 471 -104 9 1408 291 222 14 0 chr9 107877615 107877687 -16198485 + L1MC4a LINE L1 7808 7880 -2 9 1408 992 196 107 10 chr9 107882655 107882851 -16193321 - B3 SINE B2 0 216 2 9 1408 204 242 16 16 chr9 107884477 107884540 -16191632 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1408 194 0 39 0 chr9 107888566 107888592 -16187580 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1408 1197 22 0 0 chr9 107888592 107888729 -16187443 - B1_Mus1 SINE Alu -10 138 2 9 1408 240 305 0 0 chr9 107889621 107889680 -16186492 - L2 LINE L2 -846 2573 2515 9 1408 205 70 70 0 chr9 107890200 107890243 -16185929 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 9 1408 851 161 7 26 chr9 107890246 107890399 -16185773 - B1_Mur4 SINE Alu 0 150 1 9 1408 737 259 98 0 chr9 107890433 107890626 -16185546 + B3 SINE B2 1 212 -4 9 1408 891 202 21 61 chr9 107890639 107890918 -16185254 + RMER17C LTR ERVK 98 365 -45 9 1408 1207 55 0 7 chr9 107891222 107891370 -16184802 - B1_Mus1 SINE Alu 0 148 2 9 1408 239 281 16 0 chr9 107891370 107891434 -16184738 + MLT1B LTR MaLR 324 388 -2 9 1408 1224 29 0 0 chr9 107891452 107891590 -16184582 + B1_Mus1 SINE Alu 1 138 -10 9 1408 919 168 0 26 chr9 107891618 107891771 -16184401 + B1_Mur2 SINE Alu 1 149 0 9 1408 1498 43 16 16 chr9 107891825 107892014 -16184158 - B2_Mm2 SINE B2 -6 189 1 9 1408 185 351 57 47 chr9 107892054 107892353 -16183819 - L2 LINE L2 -1028 2391 2090 9 1408 692 237 25 113 chr9 107892378 107892616 -16183556 + B4 SINE B4 7 223 -69 9 1408 477 34 0 0 chr9 107892624 107892683 -16183489 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1408 321 192 13 76 chr9 107892705 107892784 -16183388 + B4 SINE B4 218 291 -1 9 1408 290 235 333 0 chr9 107892827 107892908 -16183264 + PB1 SINE Alu 9 116 -11 9 1408 454 260 187 0 chr9 107892925 107893048 -16183124 + RSINE1 SINE B4 6 151 -14 9 1408 228 35 0 0 chr9 107893052 107893081 -16183091 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1408 951 202 44 15 chr9 107893105 107893311 -16182861 + B3 SINE B2 3 214 -2 9 1408 826 154 6 45 chr9 107893311 107893466 -16182706 + B1_Mur4 SINE Alu 1 150 0 9 1408 258 61 40 20 chr9 107893470 107893520 -16182652 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 9 1408 31 26 0 0 chr9 107893536 107893574 -16182598 + AT_rich Low_complexity Low_complexity 1 38 0 9 1408 768 153 0 0 chr9 107893574 107893685 -16182487 + B3 SINE B2 1 111 -105 9 1408 216 0 0 0 chr9 107893743 107893767 -16182405 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 9 1408 382 274 31 21 chr9 107893942 107894039 -16182133 + PB1D10 SINE Alu 13 110 -7 9 1408 27 0 0 0 chr9 107894273 107894300 -16181872 + AT_rich Low_complexity Low_complexity 1 27 0 9 1408 1141 55 14 0 chr9 107894301 107894446 -16181726 - B1_Mus1 SINE Alu -1 147 1 9 1408 523 279 78 14 chr9 107896143 107896285 -16179887 - RSINE1 SINE B4 -9 156 6 9 1408 209 33 33 0 chr9 107896353 107896383 -16179789 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1408 802 179 7 7 chr9 107902235 107902381 -16173791 - B1_Mur1 SINE Alu -1 148 3 9 1408 817 182 29 7 chr9 107902414 107902552 -16173620 - B1_Mur3 SINE Alu -7 142 2 9 1408 217 310 34 11 chr9 107902558 107902646 -16173526 - PB1D10 SINE Alu -5 112 23 9 1408 245 311 9 86 chr9 107902722 107902838 -16173334 - PB1D10 SINE Alu -10 107 1 9 1408 379 287 20 0 chr9 107902740 107902841 -16173331 - B4 SINE B4 -107 185 83 9 1408 378 0 0 0 chr9 107903247 107903289 -16172883 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1408 968 141 0 0 chr9 107903290 107903432 -16172740 - B1_Mus1 SINE Alu -6 142 1 9 1408 692 213 42 7 chr9 107903584 107903726 -16172446 - B1_Mur1 SINE Alu -1 148 2 9 1408 688 192 189 12 chr9 107903749 107903918 -16172254 - B3 SINE B2 -10 206 8 9 1408 184 333 0 50 chr9 107904222 107904323 -16171849 + L3 LINE CR1 2595 2690 -1799 9 1408 358 269 89 32 chr9 107904445 107904568 -16171604 + MIR SINE MIR 21 150 -112 9 1408 301 182 74 58 chr9 107905910 107906009 -16170163 + PB1D7 SINE Alu 5 115 -5 9 1408 203 0 37 0 chr9 107907096 107907123 -16169049 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 9 1408 831 150 15 0 chr9 107907164 107907297 -16168875 - B1_Mur4 SINE Alu 0 150 16 9 1408 604 147 10 19 chr9 107907384 107907488 -16168684 + B1_Mus2 SINE Alu 45 147 0 9 1408 304 273 156 64 chr9 107907889 107908030 -16168142 - RSINE1 SINE B4 0 165 12 9 1408 493 322 0 20 chr9 107908040 107908189 -16167983 - ID_B1 SINE B4 -1 223 78 9 1408 207 0 0 0 chr9 107908199 107908222 -16167950 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9 1408 773 257 116 11 chr9 107908222 107908411 -16167761 - B3 SINE B2 -6 210 2 9 1408 637 138 200 16 chr9 107908423 107908548 -16167624 + B1_Mus1 SINE Alu 1 148 0 9 1408 436 213 17 100 chr9 107908562 107908682 -16167490 + PB1D7 SINE Alu 1 110 -10 9 1408 414 338 37 22 chr9 107908702 107908838 -16167334 + B1F SINE Alu 1 138 -11 9 1408 210 319 110 14 chr9 107908859 107908932 -16167240 + B3A SINE B2 1 80 -118 9 1408 365 176 103 0 chr9 107908870 107908938 -16167234 + B4 SINE B4 12 86 -206 9 1408 727 243 0 7 chr9 107908947 107909084 -16167088 + B3 SINE B2 2 137 -79 9 1408 533 101 89 11 chr9 107909096 107909186 -16166986 - B1_Mur3 SINE Alu 0 149 53 9 1408 255 236 20 79 chr9 107909119 107909142 -16167030 - RLTR25B LTR ERVK -507 521 472 9 1408 280 89 17 67 chr9 107909142 107909202 -16166970 - MT2B LTR ERVL -350 251 195 9 1408 255 236 20 79 chr9 107909202 107909220 -16166952 - RLTR25B LTR ERVK -507 471 427 9 1408 334 292 165 8 chr9 107909308 107909429 -16166743 + B4 SINE B4 81 220 -72 9 1408 180 0 0 0 chr9 107909429 107909449 -16166723 + (CAAAAA)n Simple_repeat Simple_repeat 6 25 0 9 1408 303 276 54 132 chr9 107909528 107909585 -16166587 + B4A SINE B4 139 185 -107 9 1408 855 162 49 32 chr9 107909585 107909770 -16166402 - B2_Mm2 SINE B2 -6 189 2 9 1408 303 276 54 132 chr9 107909770 107909879 -16166293 + B4A SINE B4 186 292 0 9 1408 839 72 0 9 chr9 107909976 107910088 -16166084 - B1_Mus1 SINE Alu -2 146 36 9 1408 180 0 0 0 chr9 107910088 107910108 -16166064 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 9 1408 780 21 0 0 chr9 107910111 107910204 -16165968 - B1_Mus2 SINE Alu -5 142 50 9 1408 294 148 32 32 chr9 107910155 107910218 -16165954 - RLTR25A LTR ERVK -531 572 510 9 1408 427 237 63 28 chr9 107910787 107910930 -16165242 - B1F SINE Alu 0 149 2 9 1408 423 302 39 0 chr9 107910944 107911073 -16165099 - B1_Mur1 SINE Alu -14 135 2 9 1408 776 149 102 22 chr9 107911270 107911407 -16164765 - B1_Mur2 SINE Alu -1 148 1 9 1408 255 61 0 0 chr9 107911419 107911452 -16164720 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 9 1408 702 259 48 21 chr9 107911452 107911641 -16164531 - B3A SINE B2 -2 191 1 9 1408 373 254 302 0 chr9 107911878 107912004 -16164168 - RSINE1 SINE B4 0 165 2 9 1408 254 299 134 0 chr9 107912016 107912113 -16164059 - PB1D10 SINE Alu -6 111 2 9 1408 1145 56 0 27 chr9 107912148 107912294 -16163878 + B1_Mus2 SINE Alu 1 142 -5 9 1408 1204 68 0 0 chr9 107912348 107912495 -16163677 + B1_Mus1 SINE Alu 2 148 0 9 1408 269 238 72 16 chr9 107912565 107912660 -16163512 + L1MB7 LINE L1 5475 5571 -607 9 1408 198 91 0 0 chr9 107912661 107912694 -16163478 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 9 1408 545 281 97 43 chr9 107912823 107913009 -16163163 + B3A SINE B2 2 197 -1 9 1408 554 289 97 68 chr9 107913011 107913107 -16163065 + L1MB7 LINE L1 5723 5809 -375 9 1408 688 196 34 20 chr9 107913107 107913253 -16162919 + B1_Mur2 SINE Alu 2 149 0 9 1408 554 289 97 68 chr9 107913253 107913598 -16162574 + L1MB7 LINE L1 5810 6177 -7 9 1408 534 286 54 0 chr9 107913617 107913764 -16162408 + RSINE1 SINE B4 11 165 0 9 1408 189 0 0 0 chr9 107913834 107913855 -16162317 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 9 1408 358 73 0 83 chr9 107913876 107913936 -16162236 - B2_Mm2 SINE B2 -94 101 47 9 1408 1151 123 35 0 chr9 107914004 107914174 -16161998 - B2_Mm1t SINE B2 -16 177 2 9 1408 206 91 61 0 chr9 107914227 107914260 -16161912 + T-rich Low_complexity Low_complexity 3 37 0 9 1408 1253 41 0 0 chr9 107914260 107914407 -16161765 - B1_Mus1 SINE Alu 0 148 2 9 1408 506 255 20 46 chr9 107914463 107914615 -16161557 - B1F1 SINE Alu -1 148 1 9 1408 622 179 80 43 chr9 107914652 107914815 -16161357 - L1MC1 LINE L1 -269 6064 5896 9 1408 795 256 24 12 chr9 107914823 107914993 -16161179 - ID_B1 SINE B4 -1 223 52 9 1408 1006 93 74 23 chr9 107915040 107915215 -16160957 + B2_Mm2 SINE B2 5 188 -7 9 1408 496 248 200 0 chr9 107915226 107915371 -16160801 + B3 SINE B2 1 174 -42 9 1408 297 98 0 0 chr9 107915696 107915737 -16160435 + B2_Mm2 SINE B2 1 41 -154 9 1408 1622 42 0 20 chr9 107915737 107915933 -16160239 + B2_Mm1t SINE B2 2 193 0 9 1408 26 30 0 0 chr9 107915961 107915994 -16160178 + AT_rich Low_complexity Low_complexity 1 33 0 1 1408 1159 121 0 0 chr9 107915998 107916163 -16160009 + B2_Mm2 SINE B2 1 165 -30 1 1408 219 125 0 0 chr9 107916166 107916206 -16159966 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1408 1049 43 16 1 chr9 107916207 107916352 -16159820 - B1_Mus1 SINE Alu 0 148 2 1 1408 430 191 0 142 chr9 107916241 107916375 -16159797 - MT2B LTR ERVL -337 264 150 1 1408 539 221 19 28 chr9 107916396 107916503 -16159669 - B3A SINE B2 -92 106 1 1 1408 589 251 222 6 chr9 107916507 107916687 -16159485 - ID_B1 SINE B4 -1 223 5 1 1408 397 323 73 0 chr9 107916872 107917064 -16159108 + L1M2 LINE L1 5595 5800 -491 1 1408 832 135 0 14 chr9 107917108 107917251 -16158921 - L1Md_F2 LINE L1 -7 6575 6435 1 1408 431 274 84 23 chr9 107917720 107917851 -16158321 - ID_B1 SINE B4 0 224 86 1 1408 217 324 40 0 chr9 107918240 107918314 -16157858 - ID4 SINE ID -2 81 5 1 1408 258 32 0 0 chr9 107918382 107918413 -16157759 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1408 1361 31 0 0 chr9 107918413 107918572 -16157600 - B2_Mm1t SINE B2 -33 160 2 1 1408 237 139 0 0 chr9 107918876 107918919 -16157253 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1408 1216 61 0 0 chr9 107918920 107919067 -16157105 - B1_Mus2 SINE Alu 0 147 1 1 1408 664 214 76 0 chr9 107919077 107919208 -16156964 - B1_Mm SINE Alu -6 141 1 1 1408 245 253 37 69 chr9 107919219 107919301 -16156871 - BC1_Mm scRNA scRNA -3 80 4 1 1408 748 328 126 45 chr9 107919305 107919869 -16156303 - LTR41 LTR ERVL -62 706 36 1 1408 569 206 28 9 chr9 107919906 107920014 -16156158 - PB1D10 SINE Alu -7 110 1 1 1408 742 284 40 89 chr9 107920150 107920374 -16155798 - B4 SINE B4 0 292 80 1 1408 919 226 14 33 chr9 107920552 107920763 -16155409 - B3 SINE B2 -8 208 2 1 1408 543 69 0 0 chr9 107920788 107920860 -16155312 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1408 405 269 110 15 chr9 107920864 107921000 -16155172 - RSINE1 SINE B4 -14 151 3 1 1408 763 182 0 0 chr9 107921051 107921177 -16154995 - B1_Mur1 SINE Alu -21 128 3 1 1408 362 264 29 70 chr9 107921226 107921397 -16154775 - L1M5 LINE L1 -1094 5052 4889 1 1408 538 262 14 14 chr9 107921444 107921591 -16154581 - B1_Mur1 SINE Alu 0 149 3 1 1408 664 165 52 52 chr9 107921632 107921766 -16154406 + B1_Mur4 SINE Alu 4 137 -13 1 1408 1350 49 42 36 chr9 107921766 107921957 -16154215 - B2_Mm2 SINE B2 -1 194 2 1 1408 1108 174 39 5 chr9 107921990 107922198 -16153974 - B3 SINE B2 -1 215 1 1 1408 356 152 0 0 chr9 107922519 107922578 -16153594 + B1_Mur1 SINE Alu 84 142 -7 1 1408 309 135 0 0 chr9 107922590 107922642 -16153530 + (TAG)n Simple_repeat Simple_repeat 2 53 0 1 1408 388 224 52 40 chr9 107922646 107922765 -16153407 + PB1 SINE Alu 5 124 -3 1 1408 348 172 0 33 chr9 107922839 107922899 -16153273 - ID4_ SINE ID -4 79 22 1 1408 359 166 14 0 chr9 107923706 107923769 -16152403 - B2_Mm2 SINE B2 -82 116 48 1 1408 1023 99 7 0 chr9 107923832 107923974 -16152198 - B2_Mm1t SINE B2 -48 145 3 1 1408 337 267 132 11 chr9 107924026 107924117 -16152055 + PB1D7 SINE Alu 11 112 -8 1 1408 324 120 0 0 chr9 107924118 107924168 -16152004 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1408 220 239 0 0 chr9 107924168 107924205 -16151967 - B1F SINE Alu -88 61 25 1 1408 297 237 92 157 chr9 107924465 107924650 -16151522 - B4 SINE B4 -11 281 109 1 1408 405 272 0 97 chr9 107924716 107924830 -16151342 - PB1D10 SINE Alu -9 108 6 1 1408 183 156 0 0 chr9 107924862 107924894 -16151278 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1 1408 317 305 90 28 chr9 107924895 107925040 -16151132 - RSINE1 SINE B4 0 165 12 1 1408 546 281 6 18 chr9 107925068 107925238 -16150934 - B3A SINE B2 -1 197 30 1 1408 225 108 0 0 chr9 107925284 107925321 -16150851 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1408 1239 34 7 0 chr9 107925321 107925468 -16150704 - B1_Mus1 SINE Alu 0 148 1 1 1408 585 185 16 16 chr9 107925637 107925758 -16150414 + B1_Mus1 SINE Alu 10 130 -18 1 1408 461 217 24 32 chr9 107925962 107926086 -16150086 + L1MB3 LINE L1 6020 6142 -41 1 1408 210 71 0 0 chr9 107927291 107927319 -16148853 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1408 1005 77 68 27 chr9 107927319 107927465 -16148707 - B2_Mm2 SINE B2 -43 152 1 1 1408 713 160 86 58 chr9 107927473 107927612 -16148560 - B1_Mur3 SINE Alu -5 144 2 1 1408 1122 209 10 0 chr9 107927636 107927842 -16148330 - B3 SINE B2 -7 209 2 1 1408 375 245 369 6 chr9 107927842 107927989 -16148183 - B3A SINE B2 -15 201 1 1 1408 616 180 0 67 chr9 107928019 107928138 -16148034 - PB1D9 SINE Alu -9 111 1 1 1408 258 56 0 0 chr9 107928142 107928178 -16147994 + (TATG)n Simple_repeat Simple_repeat 2 37 0 1 1408 1141 57 7 0 chr9 107928183 107928323 -16147849 - B1_Mus2 SINE Alu -5 142 2 1 1408 1542 38 27 0 chr9 107928331 107928517 -16147655 - B2_Mm1a SINE B2 -2 191 1 1 1408 407 227 56 107 chr9 107928526 107928723 -16147449 - B2_Mm2 SINE B2 -7 188 2 1 1408 791 173 183 6 chr9 107928745 107928925 -16147247 + B3 SINE B2 4 215 -1 1 1408 24 0 0 0 chr9 107928932 107928956 -16147216 + AT_rich Low_complexity Low_complexity 1 24 0 1 1408 1021 122 41 67 chr9 107929032 107929226 -16146946 - B2_Mm2 SINE B2 -6 189 1 1 1408 404 250 41 48 chr9 107929374 107929521 -16146651 - L1MB4 LINE L1 -215 5965 5820 1 1408 314 269 13 13 chr9 107929521 107929600 -16146572 + ID4 SINE ID 5 83 0 1 1408 318 316 48 72 chr9 107929627 107929794 -16146378 - RSINE1 SINE B4 0 165 3 1 1408 273 136 0 0 chr9 107929813 107929857 -16146315 + B2_Mm2 SINE B2 2 45 -150 1 1408 1835 221 97 5 chr9 107929881 107930285 -16145887 - Lx5 LINE L1 -3 7047 6607 1 1408 957 233 16 11 chr9 107930287 107930469 -16145703 + B3 SINE B2 34 216 0 1 1408 997 132 7 0 chr9 107930477 107930621 -16145551 + B1_Mur3 SINE Alu 3 147 -2 1 1408 185 0 0 39 chr9 107930664 107930690 -16145482 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1408 21 0 0 0 chr9 107930693 107930714 -16145458 + AT_rich Low_complexity Low_complexity 1 21 0 1 1408 335 333 12 0 chr9 107930847 107930928 -16145244 - ID4_ SINE ID 0 83 2 1 1408 1204 29 0 7 chr9 107930978 107931119 -16145053 - B1_Mm SINE Alu -7 140 1 1 1408 25 31 0 0 chr9 107931181 107931213 -16144959 + AT_rich Low_complexity Low_complexity 1 32 0 1 1408 255 138 0 0 chr9 107932280 107932325 -16143847 + B3 SINE B2 1 45 -153 1 1408 1074 101 0 0 chr9 107932328 107932476 -16143696 - B1_Mus1 SINE Alu 0 148 1 1 1408 608 287 112 12 chr9 107932476 107932645 -16143527 + B3 SINE B2 25 210 -6 1 1408 926 130 8 0 chr9 107932645 107932776 -16143396 + B1_Mus2 SINE Alu 1 132 -15 1 1408 375 240 95 47 chr9 107932807 107932925 -16143247 + PB1D9 SINE Alu 1 117 -3 1 1408 1137 56 21 0 chr9 107932925 107933068 -16143104 + B1_Mm SINE Alu 2 147 0 1 1408 257 312 32 83 chr9 107933068 107933106 -16143066 + B1_Mur3 SINE Alu 115 149 0 1 1408 634 209 70 0 chr9 107933116 107933245 -16142927 + ID_B1 SINE B4 87 224 0 1 1408 300 212 0 0 chr9 107933395 107933461 -16142711 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1408 1289 87 0 0 chr9 107933462 107933634 -16142538 - B2_Mm2 SINE B2 -23 172 1 1 1408 911 216 58 5 chr9 107933810 107934015 -16142157 - B3 SINE B2 0 216 1 1 1408 2079 139 68 0 chr9 107934709 107934773 -16141399 - RLTR19-int LTR ERVK -3446 2691 2628 1 1408 288 0 0 0 chr9 107934773 107934805 -16141367 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 1 1408 2079 139 68 0 chr9 107934805 107935079 -16141093 - RLTR19-int LTR ERVK -3510 2627 2331 1 1408 1052 51 65 7 chr9 107935097 107935235 -16140937 - B1_Mus1 SINE Alu -1 147 2 1 1408 399 233 8 101 chr9 107935278 107935407 -16140765 - RLTR19-int LTR ERVK -3810 2327 2211 1 1408 988 56 2 2 chr9 107935512 107935661 -16140511 - B1_Mus2 SINE Alu 0 149 1 1 1408 442 196 0 125 chr9 107935549 107935677 -16140495 - MT2B LTR ERVL -337 264 153 1 1408 833 126 142 12 chr9 107935677 107935846 -16140326 - RLTR19-int LTR ERVK -4100 2037 1847 1 1408 436 262 273 5 chr9 107935853 107936065 -16140107 - RLTR19-int LTR ERVK -4498 1639 1371 1 1408 3499 182 79 14 chr9 107936060 107936796 -16139376 - RLTR19-int LTR ERVK -4881 1256 473 1 1408 1358 221 29 133 chr9 107937470 107937950 -16138222 - RLTR23 LTR ERV1 0 430 1 1 1408 585 262 8 0 chr9 107938439 107938565 -16137607 + B1F SINE Alu 7 133 -16 1 1408 534 268 131 24 chr9 107938569 107938725 -16137447 + B3A SINE B2 1 174 -24 1 1408 762 222 0 20 chr9 107938725 107938872 -16137300 + B1_Mus2 SINE Alu 4 147 0 1 1408 450 0 0 0 chr9 107938882 107938932 -16137240 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1408 212 344 55 99 chr9 107938965 107939087 -16137085 - B4 SINE B4 -69 223 112 1 1408 216 0 0 0 chr9 107939087 107939111 -16137061 + (CTAAA)n Simple_repeat Simple_repeat 5 28 0 1 1408 212 344 55 99 chr9 107939111 107939169 -16137003 - B4 SINE B4 -181 111 52 1 1408 320 171 38 38 chr9 107939235 107939314 -16136858 - L1M4 LINE L1 -351 5823 5745 1 1408 228 35 0 0 chr9 107939395 107939424 -16136748 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 1 1408 223 343 131 0 chr9 107939444 107939543 -16136629 - PB1D10 SINE Alu -5 112 1 1 1408 496 286 128 0 chr9 107939543 107939609 -16136563 - ID SINE ID -136 88 6 1 1408 1681 31 0 0 chr9 107939987 107940180 -16135992 - B2_Mm1a SINE B2 0 193 1 1 1408 342 0 0 0 chr9 107940551 107940589 -16135583 + (TTTAG)n Simple_repeat Simple_repeat 1 38 0 1 1408 243 245 130 56 chr9 107940868 107940976 -16135196 - MT2B LTR ERVL -318 283 168 1 1408 577 245 177 6 chr9 107940881 107941045 -16135127 - ID_B1 SINE B4 -32 192 1 1 1408 270 0 0 0 chr9 107941144 107941174 -16134998 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1408 390 322 108 52 chr9 107941174 107941308 -16134864 - B4A SINE B4 -2 290 142 1 1408 1289 198 265 26 chr9 107941308 107941738 -16134434 - MT2A LTR ERVL 0 533 1 1 1408 390 322 108 52 chr9 107941738 107941852 -16134320 - B4A SINE B4 -151 141 28 1 1408 245 324 9 56 chr9 107941857 107941965 -16134207 - PB1 SINE Alu 0 127 25 1 1408 482 250 87 126 chr9 107942110 107942276 -16133896 - B3A SINE B2 0 198 36 1 1408 1058 35 13 59 chr9 107942276 107942422 -16133750 + B1_Mm SINE Alu 2 141 -6 1 1408 255 93 0 0 chr9 107942422 107942465 -16133707 + (CTAA)n Simple_repeat Simple_repeat 2 44 0 1 1408 482 250 87 126 chr9 107942470 107942509 -16133663 - B3A SINE B2 -163 35 1 1 1408 180 0 0 0 chr9 107942530 107942550 -16133622 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1408 740 209 35 14 chr9 107942597 107942738 -16133434 - B1_Mur2 SINE Alu 0 149 6 1 1408 378 0 0 0 chr9 107942803 107942845 -16133327 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1408 492 216 19 19 chr9 107942871 107942975 -16133197 - RSINE1 SINE B4 -38 127 24 1 1408 1434 39 21 27 chr9 107943903 107944089 -16132083 - B2_Mm2 SINE B2 -9 186 2 1 1408 183 42 0 0 chr9 107944116 107944140 -16132032 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1408 942 145 0 28 chr9 107944140 107944282 -16131890 - B1_Mus1 SINE Alu -9 139 2 1 1408 332 320 60 26 chr9 107944451 107944602 -16131570 - Lx8 LINE L1 -189 7284 7129 1 1408 392 282 56 39 chr9 107944616 107944848 -16131324 - Lx8 LINE L1 -305 7168 6905 1 1408 404 306 317 9 chr9 107945175 107945396 -16130776 + B4A SINE B4 3 291 -1 1 1408 192 40 0 0 chr9 107945528 107945553 -16130619 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1408 249 242 65 0 chr9 107945555 107945617 -16130555 - B1_Mm SINE Alu -23 124 59 1 1408 256 267 50 100 chr9 107945569 107945669 -16130503 - B3 SINE B2 -121 95 1 1 1408 238 302 92 14 chr9 107945669 107945810 -16130362 + L1MB4 LINE L1 5816 5967 -213 1 1408 421 229 56 28 chr9 107945911 107946019 -16130153 - B1_Mur3 SINE Alu -36 113 3 1 1408 284 248 71 71 chr9 107945919 107946032 -16130140 - MT2B LTR ERVL -337 264 152 1 1408 579 236 0 60 chr9 107946037 107946186 -16129986 - B1_Mur1 SINE Alu 0 149 10 1 1408 1226 48 0 0 chr9 107946276 107946421 -16129751 + B1_Mus1 SINE Alu 4 148 0 1 1408 228 264 8 40 chr9 107946438 107946452 -16129720 + B4 SINE B4 70 103 -121 1 1408 292 222 0 0 chr9 107946452 107946506 -16129666 + B1_Mur4 SINE Alu 1 54 -96 1 1408 228 264 8 40 chr9 107946506 107946521 -16129651 + B4 SINE B4 104 146 -78 1 1408 1402 67 73 0 chr9 107946532 107946691 -16129481 + B2_Mm1a SINE B2 2 160 -33 1 1408 252 0 0 0 chr9 107946691 107946719 -16129453 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 1408 1402 67 73 0 chr9 107946719 107946737 -16129435 + B2_Mm1a SINE B2 161 190 -3 1 1408 189 0 0 0 chr9 107946800 107946821 -16129351 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1408 1002 92 42 14 chr9 107946821 107946964 -16129208 - B1_Mus1 SINE Alu 0 148 2 1 1408 207 0 0 0 chr9 107947698 107947721 -16128451 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1408 252 0 0 0 chr9 107951345 107951373 -16124799 + (CGGGG)n Simple_repeat Simple_repeat 5 32 0 1 1408 270 0 0 0 chr9 107961869 107961899 -16114273 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1408 189 74 0 0 chr9 107963088 107963115 -16113057 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1 1408 724 298 41 17 chr9 107963167 107963457 -16112715 + L1M3 LINE L1 4005 4301 -1839 1 1408 284 261 92 0 chr9 107963456 107963575 -16112597 + L1M3 LINE L1 4449 4578 -1562 1 1408 572 176 0 0 chr9 107963604 107963695 -16112477 + B3 SINE B2 1 91 -125 1 1408 450 266 44 0 chr9 107965392 107965505 -16110667 - PB1D9 SINE Alu 0 120 3 1 1408 242 256 215 15 chr9 107966826 107966961 -16109211 + L2 LINE L2 2655 2816 -603 1 1408 1281 20 0 13 chr9 107967156 107967305 -16108867 - B1_Mus2 SINE Alu 0 147 1 1 1408 668 242 127 16 chr9 107967339 107967528 -16108644 - B3 SINE B2 -5 211 2 1 1408 926 164 0 7 chr9 107967534 107967681 -16108491 - B1F2 SINE Alu -2 147 2 1 1408 207 0 0 0 chr9 107971094 107971117 -16105055 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1408 473 175 295 23 chr9 107973916 107973938 -16102234 - URR1A DNA MER1_type -62 164 145 1 1408 1280 91 74 0 chr9 107973938 107974114 -16102058 + B2_Mm2 SINE B2 1 189 -6 1 1408 473 175 295 23 chr9 107974114 107974220 -16101952 - URR1A DNA MER1_type -82 144 1 1 1408 745 297 7 101 chr9 107974343 107974620 -16101552 + B4 SINE B4 29 279 -13 1 1408 283 288 0 126 chr9 107975145 107975175 -16100997 + ID_B1 SINE B4 66 176 -48 1 1408 434 247 0 0 chr9 107975175 107975272 -16100900 + B1F1 SINE Alu 2 98 -51 1 1408 466 131 25 34 chr9 107975272 107975300 -16100872 + polypurine Low_complexity Low_complexity 2 28 0 1 1408 1019 73 0 48 chr9 107975300 107975487 -16100685 + (GGGAGA)n Simple_repeat Simple_repeat 2 179 0 1 1408 466 131 25 34 chr9 107975487 107975577 -16100595 + GA-rich Low_complexity Low_complexity 29 119 0 1 1408 354 282 0 0 chr9 107976583 107976661 -16099511 + PB1D10 SINE Alu 21 98 -19 1 1408 1021 154 0 0 chr9 107976671 107976820 -16099352 - B1_Mur4 SINE Alu 0 150 2 1 1408 1204 127 39 0 chr9 107976827 107977008 -16099164 - B2_Mm2 SINE B2 -7 188 1 1 1408 559 217 0 9 chr9 107977229 107977336 -16098836 + B1_Mur2 SINE Alu 44 149 0 1 1408 409 138 12 12 chr9 107977338 107977357 -16098815 + polypurine Low_complexity Low_complexity 3 21 0 1 1408 1249 73 11 0 chr9 107977357 107977535 -16098637 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1408 409 138 12 12 chr9 107977535 107977596 -16098576 + polypurine Low_complexity Low_complexity 22 83 0 1 1408 857 171 271 0 chr9 107977605 107977775 -16098397 + B3 SINE B2 1 216 0 1 1408 303 28 0 0 chr9 107977887 107977923 -16098249 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1408 631 126 108 0 chr9 107978013 107978124 -16098048 + B1_Mus1 SINE Alu 18 140 -8 1 1408 337 235 0 14 chr9 107978202 107978271 -16097901 + RSINE1 SINE B4 2 69 -96 1 1408 768 218 0 0 chr9 107978355 107978534 -16097638 + GA-rich Low_complexity Low_complexity 2 180 0 1 1408 243 146 0 0 chr9 107978535 107978576 -16097596 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1408 240 291 43 164 chr9 107978591 107978731 -16097441 + B1F2 SINE Alu 2 124 -25 1 1408 1177 33 0 0 chr9 107978749 107978900 -16097272 - B2_Mm1t SINE B2 -6 187 37 1 1408 516 220 0 0 chr9 107978976 107979094 -16097078 + CT-rich Low_complexity Low_complexity 3 120 0 1 1408 254 270 57 57 chr9 107979094 107979200 -16096972 - PB1D10 SINE Alu 0 117 12 1 1408 243 0 0 0 chr9 107980671 107980698 -16095474 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1408 212 184 49 0 chr9 107982158 107982208 -16093964 - MIRm SINE MIR -111 157 103 1 1408 259 387 32 0 chr9 107982281 107982405 -16093767 + Charlie5 DNA MER1_type 27 154 -2470 1 1408 1016 123 7 7 chr9 107989096 107989243 -16086929 - B1_Mus1 SINE Alu 0 148 2 1 1408 1780 132 95 27 chr9 107991053 107991389 -16084783 + ORR1B2 LTR MaLR 1 359 -8 1 1408 217 344 93 11 chr9 107992839 107992990 -16083182 - MIRm SINE MIR -79 189 31 1 1408 311 254 0 0 chr9 107993006 107993069 -16083103 - ID4 SINE ID -13 70 8 1 1408 183 114 0 0 chr9 107995498 107995533 -16080639 + (TCTCTG)n Simple_repeat Simple_repeat 3 37 0 1 1408 222 37 0 0 chr9 107997253 107997280 -16078892 + (CGGGGG)n Simple_repeat Simple_repeat 2 28 0 1 1408 453 250 42 0 chr9 107997890 107997986 -16078186 - PB1D9 SINE Alu -20 100 1 1 1408 301 300 8 68 chr9 107997986 107998024 -16078148 - B4 SINE B4 -207 85 55 1 1408 504 93 0 0 chr9 107998708 107998783 -16077389 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1408 432 182 0 0 chr9 108000702 108000790 -16075382 + (CACG)n Simple_repeat Simple_repeat 2 89 0 1 1408 180 179 0 0 chr9 108001350 108001389 -16074783 + A-rich Low_complexity Low_complexity 2 40 0 2 1408 266 265 30 10 chr9 108002578 108002677 -16073495 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 3 1408 210 134 51 73 chr9 108002689 108002866 -16073306 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 3 1408 594 264 74 7 chr9 108002937 108003086 -16073086 - RSINE1 SINE B4 -4 161 3 4 1408 414 338 20 14 chr9 108003115 108003262 -16072910 + B1F2 SINE Alu 1 148 -1 5 1409 1168 51 0 0 chr9 108003990 108004127 -16072045 + B1_Mus1 SINE Alu 2 138 -10 6 1409 207 0 0 0 chr9 108004127 108004150 -16072022 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1409 185 0 40 0 chr9 108004211 108004236 -16071936 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1409 866 134 8 0 chr9 108004236 108004370 -16071802 - B1_Mur3 SINE Alu -5 144 10 9 1409 419 335 44 0 chr9 108004379 108004537 -16071635 + L2a LINE L2 3262 3426 0 1 1409 241 182 0 83 chr9 108005782 108005842 -16070330 + B1_Mur1 SINE Alu 57 111 -38 1 1409 561 45 22 22 chr9 108006620 108006710 -16069462 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 1 1409 914 169 7 0 chr9 108006719 108006859 -16069313 + B1_Mur1 SINE Alu 1 141 -8 1 1409 234 128 0 0 chr9 108006859 108006898 -16069274 + (CGAA)n Simple_repeat Simple_repeat 3 41 0 1 1409 234 91 0 0 chr9 108007489 108007522 -16068650 + (CTG)n Simple_repeat Simple_repeat 1 33 0 1 1409 180 167 0 0 chr9 108013445 108013493 -16062679 + (CTG)n Simple_repeat Simple_repeat 1 48 0 1 1409 271 339 0 0 chr9 108013598 108013778 -16062394 + (CTG)n Simple_repeat Simple_repeat 1 180 0 1 1409 24 53 0 0 chr9 108013869 108013907 -16062265 + GC_rich Low_complexity Low_complexity 1 38 0 1 1409 829 183 0 0 chr9 108019091 108019233 -16056939 - B1_Mur2 SINE Alu -2 147 6 1 1409 279 0 0 0 chr9 108020387 108020418 -16055754 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1409 1477 32 0 0 chr9 108020536 108020722 -16055450 + MT2_Mm LTR ERVL 308 493 0 2 1409 233 328 34 42 chr9 108020751 108020869 -16055303 + ORR1E LTR MaLR 122 238 -121 2 1409 378 0 0 0 chr9 108021068 108021110 -16055062 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1409 1040 102 0 13 chr9 108021110 108021249 -16054923 - B1_Mus1 SINE Alu -9 139 2 2 1409 814 277 64 64 chr9 108021362 108021721 -16054451 + ORR1E LTR MaLR 1 359 0 2 1409 21 0 0 0 chr9 108022426 108022447 -16053725 + GC_rich Low_complexity Low_complexity 1 21 0 2 1409 456 277 62 0 chr9 108023411 108023523 -16052649 + PB1D7 SINE Alu 1 119 -1 2 1409 219 69 0 0 chr9 108023534 108023563 -16052609 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1409 750 118 0 22 chr9 108025292 108025421 -16050751 + (TTC)n Simple_repeat Simple_repeat 1 126 0 2 1409 1062 102 11 6 chr9 108025421 108025598 -16050574 + (TCC)n Simple_repeat Simple_repeat 3 180 0 3 1409 750 118 0 22 chr9 108025598 108025607 -16050565 + (TTC)n Simple_repeat Simple_repeat 1 9 0 3 1409 1034 122 0 13 chr9 108025607 108025756 -16050416 - B1_Mus1 SINE Alu 0 148 2 3 1409 891 62 0 0 chr9 108026547 108026676 -16049496 - L1Md_F2 LINE L1 0 6582 6454 3 1409 231 291 0 0 chr9 108029282 108029337 -16046835 - ID4 SINE ID 0 83 29 3 1409 242 29 0 28 chr9 108030620 108030656 -16045516 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 3 1409 692 234 17 71 chr9 108033016 108033255 -16042917 + L1ME2z LINE L1 6099 6324 -120 3 1409 725 159 129 0 chr9 108033264 108033396 -16042776 + B1_Mur2 SINE Alu 1 149 0 3 1409 573 76 0 0 chr9 108033398 108033477 -16042695 + (CAAAC)n Simple_repeat Simple_repeat 5 83 0 3 1409 259 348 9 0 chr9 108033510 108033622 -16042550 + L1ME2z LINE L1 6327 6439 -5 3 1409 740 322 119 5 chr9 108033668 108033769 -16042403 - L1MCa LINE L1 -842 5479 5369 4 1409 1389 60 54 5 chr9 108033769 108033953 -16042219 - B2_Mm2 SINE B2 0 195 3 4 1409 740 322 119 5 chr9 108033953 108034263 -16041909 - L1MCa LINE L1 -953 5368 5022 4 1409 387 0 0 0 chr9 108034335 108034378 -16041794 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1409 301 273 44 133 chr9 108034444 108034511 -16041661 - L1MCa LINE L1 -5191 1317 1247 4 1409 690 200 14 20 chr9 108034511 108034659 -16041513 - B1_Mus2 SINE Alu 0 147 1 4 1409 301 273 44 133 chr9 108034659 108034715 -16041457 - L1MCa LINE L1 -5262 1246 1207 4 1409 957 207 48 0 chr9 108034715 108034903 -16041269 - B3A SINE B2 -1 197 1 4 1409 301 273 44 133 chr9 108034903 108034981 -16041191 - L1MCa LINE L1 -5302 1206 1133 4 1409 506 250 197 0 chr9 108035001 108035133 -16041039 - RSINE1 SINE B4 0 165 8 4 1409 1364 51 79 6 chr9 108035211 108035371 -16040801 + B2_Mm1t SINE B2 2 160 -33 4 1409 207 0 0 0 chr9 108035371 108035394 -16040778 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1409 1364 51 79 6 chr9 108035394 108035410 -16040762 + B2_Mm1t SINE B2 161 189 -4 4 1409 210 69 207 0 chr9 108036178 108036323 -16039849 + (CCTG)n Simple_repeat Simple_repeat 2 176 0 4 1409 708 213 1 0 chr9 108036337 108037176 -16038996 + CT-rich Low_complexity Low_complexity 1 840 0 4 1409 894 144 0 0 chr9 108037310 108037490 -16038682 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1409 699 168 0 0 chr9 108037504 108037671 -16038501 + (TG)n Simple_repeat Simple_repeat 2 168 0 5 1409 623 241 110 0 chr9 108037678 108037823 -16038349 - RSINE1 SINE B4 -1 164 4 5 1409 220 156 0 100 chr9 108037848 108037898 -16038274 + B1_Mm SINE Alu 90 134 -13 5 1409 1034 133 6 0 chr9 108037942 108038115 -16038057 + (GGAGAA)n Simple_repeat Simple_repeat 2 175 0 5 1409 1166 43 7 0 chr9 108038314 108038455 -16037717 - B1_Mus2 SINE Alu -5 142 1 5 1409 21 0 0 0 chr9 108038460 108038481 -16037691 + AT_rich Low_complexity Low_complexity 1 21 0 5 1409 1452 75 21 0 chr9 108038481 108038669 -16037503 - B2_Mm1t SINE B2 0 193 2 5 1409 899 223 62 38 chr9 108038675 108038885 -16037287 - B3 SINE B2 0 216 2 5 1409 959 124 28 0 chr9 108040950 108041095 -16035077 - B1_Mur4 SINE Alu -1 149 1 5 1409 857 182 122 5 chr9 108041102 108041290 -16034882 - B3 SINE B2 -6 210 1 5 1409 889 259 78 0 chr9 108042201 108042406 -16033766 - ID_B1 SINE B4 -2 222 2 6 1409 784 198 126 11 chr9 108042425 108042599 -16033573 - B3 SINE B2 0 216 23 6 1409 243 343 64 89 chr9 108042458 108042615 -16033557 - RSINE1 SINE B4 -4 161 9 6 1409 211 219 243 14 chr9 108042854 108042928 -16033244 - PB1D7 SINE Alu -17 103 13 6 1409 181 324 42 0 chr9 108043042 108043113 -16033059 + L2b LINE L2 3277 3350 -25 6 1409 907 142 0 0 chr9 108044470 108044618 -16031554 + B1_Mur2 SINE Alu 1 148 -1 6 1409 336 304 25 81 chr9 108044479 108044640 -16031532 + B4A SINE B4 95 246 -46 6 1409 405 58 0 0 chr9 108044640 108044692 -16031480 + (GGGA)n Simple_repeat Simple_repeat 3 54 0 6 1409 1255 191 0 0 chr9 108045332 108045542 -16030630 - B3 SINE B2 -3 213 4 6 1409 237 227 91 0 chr9 108046475 108046541 -16029631 - Charlie7a DNA MER1_type -15 257 186 6 1409 281 261 43 51 chr9 108046625 108046649 -16029523 + B1F SINE Alu 3 118 -31 7 1409 408 269 0 0 chr9 108046649 108046742 -16029430 + ID_B1 SINE B4 104 196 -28 7 1409 387 0 0 0 chr9 108046890 108046933 -16029239 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1409 444 164 15 134 chr9 108046982 108047116 -16029056 + ORR1C1 LTR MaLR 1 118 -260 7 1409 289 28 0 0 chr9 108047119 108047155 -16029017 + ORR1C1 LTR MaLR 343 378 0 7 1409 439 319 21 73 chr9 108047632 108047865 -16028307 - L1M7 LINE L1 -4602 1616 1396 7 1409 720 156 83 13 chr9 108047879 108048035 -16028137 + URR1A DNA MER1_type 60 226 0 7 1409 2044 151 94 29 chr9 108048102 108048517 -16027655 + RMER10A LTR ERVL 1 442 0 7 1409 270 0 0 0 chr9 108048583 108048613 -16027559 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1409 729 172 82 7 chr9 108048621 108048756 -16027416 - B1_Mus1 SINE Alu -3 145 1 7 1409 369 0 0 0 chr9 108048758 108048799 -16027373 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1409 216 0 0 0 chr9 108049410 108049434 -16026738 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 8 1409 205 189 0 0 chr9 108051541 108051578 -16024594 + GA-rich Low_complexity Low_complexity 4 40 0 8 1409 24 0 0 0 chr9 108051679 108051703 -16024469 + AT_rich Low_complexity Low_complexity 1 24 0 8 1409 479 277 14 14 chr9 108051935 108052078 -16024094 + RSINE1 SINE B4 21 163 -2 8 1409 443 18 18 0 chr9 108052102 108052158 -16024014 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1409 254 321 94 0 chr9 108052400 108052506 -16023666 + RSINE1 SINE B4 46 161 -4 8 1409 297 0 0 0 chr9 108052667 108052700 -16023472 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1409 354 143 0 0 chr9 108052700 108052777 -16023395 + (GA)n Simple_repeat Simple_repeat 2 78 0 8 1409 333 47 0 0 chr9 108053374 108053417 -16022755 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1409 868 137 21 14 chr9 108053620 108053761 -16022411 - B1_Mus1 SINE Alu -5 143 2 9 1409 2313 145 111 3 chr9 108053796 108054176 -16021996 + MTC LTR MaLR 1 421 0 9 1409 1116 200 14 5 chr9 108054403 108054614 -16021558 - B3 SINE B2 -2 214 2 9 1409 943 231 15 0 chr9 108054639 108054838 -16021334 - ID_B1 SINE B4 -16 208 7 9 1409 1008 236 15 0 chr9 108055220 108055423 -16020749 + B3 SINE B2 5 210 -6 9 1409 944 173 32 88 chr9 108055450 108055666 -16020506 - URR1B DNA MER1_type -14 211 8 9 1409 291 257 39 51 chr9 108055692 108055770 -16020402 + PB1D10 SINE Alu 12 88 -29 9 1409 491 291 171 16 chr9 108056987 108057350 -16018822 + L1MB4 LINE L1 5707 6125 -55 9 1409 444 220 22 0 chr9 108057356 108057447 -16018725 + B1F SINE Alu 5 97 -52 9 1409 327 277 34 67 chr9 108057722 108057931 -16018241 + L1MB7 LINE L1 5838 6039 -145 9 1409 1144 151 13 74 chr9 108057976 108058205 -16017967 - B3 SINE B2 0 216 2 1 1409 27 0 0 0 chr9 108058215 108058242 -16017930 + AT_rich Low_complexity Low_complexity 1 27 0 1 1409 645 185 50 0 chr9 108058242 108058361 -16017811 - B1_Mur2 SINE Alu 0 149 25 1 1409 297 0 0 0 chr9 108058393 108058426 -16017746 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1409 189 0 0 0 chr9 108058426 108058446 -16017726 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1409 397 204 45 11 chr9 108058451 108058540 -16017632 - RSINE1 SINE B4 -62 103 12 1 1409 342 336 42 21 chr9 108060629 108060647 -16015525 + B1F SINE Alu 3 148 -1 1 1409 510 262 0 24 chr9 108060647 108060772 -16015400 + ID_B1 SINE B4 102 223 -1 1 1409 591 181 86 0 chr9 108060843 108060959 -16015213 + B1F SINE Alu 18 143 -6 1 1409 22 0 0 0 chr9 108061198 108061220 -16014952 + AT_rich Low_complexity Low_complexity 1 22 0 1 1409 1186 161 64 15 chr9 108061252 108061454 -16014718 + B3 SINE B2 2 213 -3 1 1409 336 128 0 3 chr9 108061455 108061509 -16014663 + B1_Mur2 SINE Alu 86 140 -9 1 1409 522 266 87 17 chr9 108061701 108061873 -16014299 + Lx8 LINE L1 7072 7255 -218 1 1409 331 257 62 123 chr9 108061988 108062067 -16014105 + RLTR25B LTR ERVK 320 386 -642 1 1409 841 111 0 87 chr9 108062067 108062205 -16013967 + B1_Mus1 SINE Alu 1 126 -22 1 1409 227 259 0 129 chr9 108062282 108062344 -16013828 - B1F2 SINE Alu -94 55 2 1 1409 417 307 101 12 chr9 108062369 108062537 -16013635 - B3A SINE B2 -15 183 1 1 1409 493 207 161 17 chr9 108063425 108063543 -16012629 + B1_Mur1 SINE Alu 2 136 -13 1 1409 342 0 0 0 chr9 108063817 108063855 -16012317 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1409 1120 82 0 0 chr9 108063859 108063994 -16012178 + B1_Mus2 SINE Alu 2 136 -11 1 1409 189 74 0 0 chr9 108063996 108064023 -16012149 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1409 389 256 116 0 chr9 108064096 108064217 -16011955 + B1F1 SINE Alu 1 135 -14 1 1409 421 292 21 0 chr9 108064272 108064455 -16011717 + L1MD1 LINE L1 5685 5874 -485 1 1409 1257 252 44 79 chr9 108064624 108064821 -16011351 + MTD LTR MaLR 15 209 -210 1 1409 550 245 102 18 chr9 108064821 108064987 -16011185 + B3A SINE B2 1 180 -18 1 1409 1257 228 31 52 chr9 108064987 108065207 -16010965 + MTD LTR MaLR 210 405 -14 1 1409 431 282 22 22 chr9 108065265 108065399 -16010773 - B1F SINE Alu -13 136 3 1 1409 854 173 22 0 chr9 108065437 108065576 -16010596 + B1_Mur1 SINE Alu 1 142 -7 1 1409 630 250 31 78 chr9 108065581 108065772 -16010400 + B3A SINE B2 2 183 -15 1 1409 29 28 0 0 chr9 108065788 108065824 -16010348 + AT_rich Low_complexity Low_complexity 1 36 0 1 1409 1157 76 0 0 chr9 108065853 108065998 -16010174 + B1_Mus2 SINE Alu 1 145 -2 1 1409 350 234 52 0 chr9 108066628 108066705 -16009467 - ID4 SINE ID -1 82 2 1 1409 243 150 0 0 chr9 108066708 108066748 -16009424 + L1M4b LINE L1 3033 3072 -4262 1 1409 854 188 21 0 chr9 108066749 108066893 -16009279 + B1_Mur1 SINE Alu 2 148 -1 1 1409 976 155 0 0 chr9 108066928 108067070 -16009102 - B1_Mur2 SINE Alu -6 143 2 1 1409 435 235 205 11 chr9 108067070 108067365 -16008807 + L1M4b LINE L1 2865 3297 -4037 1 1409 439 268 9 18 chr9 108067415 108067529 -16008643 - B1F1 SINE Alu 0 149 37 1 1409 253 310 60 0 chr9 108067670 108067770 -16008402 + PB1 SINE Alu 11 116 -11 1 1409 1037 259 116 43 chr9 108067831 108068307 -16007865 + L1M4b LINE L1 3286 3781 -3225 1 1409 994 128 7 20 chr9 108068307 108068458 -16007714 - B1_Mur3 SINE Alu 0 149 1 1 1409 1037 259 116 43 chr9 108068458 108068610 -16007562 + L1M4b LINE L1 3782 3960 -3046 1 1409 327 278 16 57 chr9 108068733 108068855 -16007317 + PB1D10 SINE Alu 1 117 0 1 1409 823 226 85 10 chr9 108068914 108069115 -16007057 + B3 SINE B2 1 216 0 1 1409 977 131 170 21 chr9 108069134 108069322 -16006850 - B3 SINE B2 0 216 1 1 1409 832 222 143 0 chr9 108069342 108069531 -16006641 - B3 SINE B2 0 216 1 1 1409 239 282 23 12 chr9 108069555 108069641 -16006531 + Lx8 LINE L1 7147 7233 -240 1 1409 257 191 0 16 chr9 108069650 108069671 -16006501 + polypyrimidine Low_complexity Low_complexity 43 63 0 1 1409 1058 135 0 6 chr9 108069671 108069850 -16006322 + (TCC)n Simple_repeat Simple_repeat 3 180 0 1 1409 257 191 0 16 chr9 108069850 108069892 -16006280 + polypyrimidine Low_complexity Low_complexity 2 42 0 1 1409 1137 128 0 0 chr9 108069892 108070072 -16006100 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1409 557 195 8 85 chr9 108070079 108070208 -16005964 - B1_Mur4 SINE Alu -6 144 26 1 1409 694 198 250 0 chr9 108070348 108070520 -16005652 + B3 SINE B2 2 216 0 1 1409 551 261 93 79 chr9 108070550 108070561 -16005611 + L1M4b LINE L1 4827 4837 -2169 1 1409 307 39 58 0 chr9 108070561 108070613 -16005559 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 1409 551 261 93 79 chr9 108070613 108070880 -16005292 + L1M4b LINE L1 4838 5109 -1897 1 1409 251 250 40 53 chr9 108070895 108070971 -16005201 + PB1D10 SINE Alu 43 117 0 1 1409 785 158 69 35 chr9 108070977 108071121 -16005051 + B1_Mur4 SINE Alu 1 149 -1 1 1409 1225 54 0 0 chr9 108071191 108071338 -16004834 + B1_Mus1 SINE Alu 2 148 0 1 1409 384 219 188 0 chr9 108071627 108071723 -16004449 + PB1D9 SINE Alu 1 114 -6 1 1409 367 317 81 85 chr9 108071793 108072041 -16004131 + MT2B2 LTR ERVL 18 264 -320 1 1409 1147 36 7 0 chr9 108071935 108072075 -16004097 + B1_Mus1 SINE Alu 8 148 0 1 1409 21 36 0 0 chr9 108072362 108072390 -16003782 + AT_rich Low_complexity Low_complexity 1 28 0 1 1409 358 215 35 61 chr9 108072721 108072835 -16003337 - PB1 SINE Alu -6 121 11 1 1409 218 325 31 31 chr9 108073521 108073651 -16002521 + L2c LINE L2 3227 3356 -31 1 1409 495 226 84 9 chr9 108073865 108073972 -16002200 + B1_Mur4 SINE Alu 10 124 -26 1 1409 510 203 186 0 chr9 108073968 108074086 -16002086 + ID_B1 SINE B4 84 223 -1 1 1409 644 148 0 61 chr9 108074106 108074221 -16001951 - B1_Mur2 SINE Alu -41 108 1 1 1409 284 342 40 48 chr9 108074544 108074566 -16001606 + ID SINE ID 65 85 -139 1 1409 394 279 57 9 chr9 108074566 108074671 -16001501 + B1F1 SINE Alu 3 112 -37 1 1409 203 192 39 0 chr9 108075154 108075206 -16000966 + (CATG)n Simple_repeat Simple_repeat 2 55 0 1 1409 1243 55 0 0 chr9 108075625 108075770 -16000402 - B1_Mm SINE Alu 0 147 3 1 1409 569 221 56 112 chr9 108076135 108076313 -15999859 + B4 SINE B4 125 292 0 1 1409 28 0 0 0 chr9 108077869 108077897 -15998275 + GC_rich Low_complexity Low_complexity 1 28 0 1 1409 191 364 73 23 chr9 108078014 108078191 -15997981 + L2 LINE L2 2535 2720 -699 1 1409 552 176 0 180 chr9 108078579 108078718 -15997454 + PB1D9 SINE Alu 1 114 -6 1 1409 359 278 72 0 chr9 108078783 108078880 -15997292 + MLT1G3 LTR MaLR 461 564 -31 1 1409 2025 167 63 6 chr9 108078951 108079313 -15996859 - ORR1C2 LTR MaLR -1 383 1 1 1409 283 350 29 96 chr9 108079415 108079551 -15996621 + MLT1G1 LTR MaLR 440 566 -13 1 1409 4012 44 4 2 chr9 108079812 108080293 -15995879 + L1Md_F2 LINE L1 6098 6579 -3 1 1409 322 238 87 20 chr9 108080513 108080659 -15995513 - B4 SINE B4 -4 161 1 1 1409 511 234 55 34 chr9 108082279 108082425 -15993747 - B1F SINE Alu 0 149 1 1 1409 322 225 62 12 chr9 108082490 108082571 -15993601 - MIR3 SINE MIR -3 205 121 1 1409 267 182 18 0 chr9 108082977 108083032 -15993140 + MIRc SINE MIR 197 252 -16 1 1409 305 190 206 15 chr9 108083292 108083390 -15992782 + B1F SINE Alu 3 115 -2 1 1409 1030 252 18 0 chr9 108083394 108083612 -15992560 + ID_B1 SINE B4 2 223 -1 1 1409 415 234 26 0 chr9 108083623 108083700 -15992472 + ID4 SINE ID 2 80 -3 1 1409 241 177 111 25 chr9 108083854 108083935 -15992237 + L1MA8 LINE L1 6089 6176 -115 1 1409 240 287 126 11 chr9 108083999 108084094 -15992078 + PB1D10 SINE Alu 1 106 -11 1 1409 343 284 53 0 chr9 108084116 108084211 -15991961 + B4A SINE B4 15 114 -178 1 1409 526 316 27 49 chr9 108084267 108084450 -15991722 + B3A SINE B2 20 198 0 1 1409 740 196 28 7 chr9 108084472 108084616 -15991556 + B1_Mm SINE Alu 1 147 0 1 1409 1194 161 16 0 chr9 108084644 108084837 -15991335 + B3 SINE B2 16 211 -5 1 1409 376 152 10 10 chr9 108084940 108085040 -15991132 + CT-rich Low_complexity Low_complexity 2 101 0 1 1409 405 109 0 0 chr9 108085040 108085104 -15991068 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1409 243 240 82 118 chr9 108085704 108085777 -15990395 + ID4 SINE ID 2 73 -10 1 1409 324 0 0 0 chr9 108085777 108085813 -15990359 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1409 243 240 82 118 chr9 108085813 108085824 -15990348 + ID4 SINE ID 74 83 0 1 1409 513 194 154 8 chr9 108086672 108086802 -15989370 + B1F1 SINE Alu 1 149 0 1 1409 262 278 0 40 chr9 108086814 108086889 -15989283 + ID4 SINE ID 2 73 -10 1 1409 270 0 0 0 chr9 108086896 108086926 -15989246 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 1409 367 311 48 18 chr9 108086967 108087134 -15989038 + L1MC5 LINE L1 7345 7516 -445 1 1409 564 270 39 69 chr9 108087246 108087449 -15988723 + B3A SINE B2 2 198 0 1 1409 248 304 14 0 chr9 108087469 108087538 -15988634 + ID4_ SINE ID 3 72 -11 1 1409 261 139 0 0 chr9 108087806 108087849 -15988323 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1409 558 245 13 33 chr9 108087903 108088055 -15988117 + B1F1 SINE Alu 1 149 0 1 1409 384 271 152 40 chr9 108089168 108089345 -15986827 - B4A SINE B4 -94 198 2 1 1409 1165 207 20 5 chr9 108089374 108089573 -15986599 - B3 SINE B2 -10 206 5 1 1409 318 293 12 0 chr9 108089599 108089681 -15986491 - ID4_ SINE ID 0 83 1 2 1409 276 77 0 0 chr9 108089797 108089836 -15986336 + (TGAG)n Simple_repeat Simple_repeat 1 39 0 2 1409 249 409 80 13 chr9 108089838 108089989 -15986183 - MER91A DNA Tip100 -35 161 1 2 1409 24 32 0 0 chr9 108092376 108092407 -15983765 + GC_rich Low_complexity Low_complexity 1 31 0 2 1409 23 33 0 0 chr9 108092625 108092655 -15983517 + GC_rich Low_complexity Low_complexity 1 30 0 2 1409 553 225 103 32 chr9 108092947 108093103 -15983069 + ID_B1 SINE B4 58 224 0 2 1409 568 275 81 0 chr9 108093106 108093255 -15982917 + RSINE1 SINE B4 3 163 -2 2 1409 707 197 15 0 chr9 108093321 108093453 -15982719 + B1_Mus2 SINE Alu 1 134 -13 2 1409 243 0 0 0 chr9 108093454 108093481 -15982691 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1409 259 238 32 0 chr9 108093494 108093557 -15982615 + GA-rich Low_complexity Low_complexity 2 66 0 2 1409 411 289 38 23 chr9 108093631 108093762 -15982410 + B1_Mur2 SINE Alu 3 135 -14 2 1409 957 133 0 34 chr9 108094481 108094629 -15981543 + B1_Mus1 SINE Alu 6 148 0 2 1409 232 311 156 0 chr9 108094944 108095066 -15981106 + MIR SINE MIR 49 189 -73 2 1409 334 268 235 43 chr9 108095231 108095418 -15980754 - RMER15 LTR ERVL -15 560 338 2 1409 218 32 0 31 chr9 108095738 108095770 -15980402 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1409 855 238 51 69 chr9 108096763 108096810 -15979362 + B3 SINE B2 4 51 -165 2 1409 923 167 172 0 chr9 108096810 108097002 -15979170 + URR1B DNA MER1_type 1 225 0 2 1409 855 238 51 69 chr9 108097002 108097171 -15979001 + B3 SINE B2 52 216 0 2 1409 531 286 152 48 chr9 108097212 108097462 -15978710 + B4 SINE B4 7 282 -10 2 1409 7403 59 3 33 chr9 108097531 108098658 -15977514 + L1_Mus1 LINE L1 5475 6567 0 2 1409 439 222 82 18 chr9 108098686 108098796 -15977376 + B3 SINE B2 100 216 0 2 1409 1577 37 5 20 chr9 108098820 108099015 -15977157 + B2_Mm1t SINE B2 2 193 0 2 1409 180 97 0 0 chr9 108099564 108099595 -15976577 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1409 1639 32 5 0 chr9 108100388 108100576 -15975596 - B2_Mm1t SINE B2 -4 189 1 2 1409 198 0 0 0 chr9 108101520 108101542 -15974630 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1409 766 197 0 16 chr9 108101542 108101671 -15974501 - B1_Mur2 SINE Alu -11 138 12 2 1409 529 280 67 0 chr9 108101671 108101821 -15974351 - ID_B1 SINE B4 -55 169 10 2 1409 806 173 0 4 chr9 108101908 108102178 -15973994 + (CA)n Simple_repeat Simple_repeat 1 268 0 2 1409 1298 139 24 5 chr9 108102412 108102621 -15973551 - URR1B DNA MER1_type 0 225 13 2 1409 304 220 275 0 chr9 108103244 108103335 -15972837 - RSINE1 SINE B4 -44 121 6 2 1409 1225 72 66 0 chr9 108104102 108104269 -15971903 + L1_Mus1 LINE L1 6389 6566 -1 2 1409 526 236 45 9 chr9 108104454 108104565 -15971607 - PB1D9 SINE Alu 0 120 6 2 1409 455 237 132 89 chr9 108104606 108104796 -15971376 - B3A SINE B2 0 198 1 2 1409 1170 72 0 0 chr9 108104826 108104964 -15971208 - B1_Mm SINE Alu -8 139 2 2 1409 691 226 15 0 chr9 108104975 108105108 -15971064 - B1F2 SINE Alu -6 143 9 2 1409 500 268 52 8 chr9 108105112 108105247 -15970925 - ID_B1 SINE B4 -2 222 86 2 1409 239 113 0 19 chr9 108105255 108105309 -15970863 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 2 1409 1188 61 14 0 chr9 108105314 108105461 -15970711 - B1_Mur4 SINE Alu 0 150 2 2 1409 479 274 52 0 chr9 108106313 108106448 -15969724 - ID_B1 SINE B4 -7 217 76 2 1409 209 245 110 20 chr9 108106943 108107043 -15969129 - MIRm SINE MIR -94 182 74 2 1409 246 62 0 0 chr9 108107554 108107586 -15968586 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2 1409 22 35 0 0 chr9 108108263 108108292 -15967880 + AT_rich Low_complexity Low_complexity 1 29 0 2 1409 180 0 0 0 chr9 108108590 108108610 -15967562 + (CAAAC)n Simple_repeat Simple_repeat 3 22 0 2 1409 397 257 67 0 chr9 108112254 108112359 -15963813 + PB1D7 SINE Alu 3 114 -6 2 1409 499 204 209 6 chr9 108112371 108112548 -15963624 + B3 SINE B2 4 216 0 2 1409 1134 119 0 0 chr9 108112568 108112727 -15963445 + B2_Mm2 SINE B2 2 160 -35 2 1409 333 0 0 0 chr9 108112733 108112770 -15963402 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1409 453 115 0 0 chr9 108113441 108113528 -15962644 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 2 1409 424 200 259 9 chr9 108113861 108113977 -15962195 + B1_Mus2 SINE Alu 1 145 -2 2 1409 372 234 40 60 chr9 108115087 108115235 -15960937 + B3A SINE B2 1 195 -3 2 1409 21 0 0 0 chr9 108115355 108115376 -15960796 + AT_rich Low_complexity Low_complexity 1 21 0 2 1409 319 289 55 10 chr9 108115916 108116021 -15960151 - PB1D7 SINE Alu 0 120 2 2 1409 377 196 124 52 chr9 108116300 108116397 -15959775 - PB1D10 SINE Alu -1 116 13 2 1409 635 236 8 8 chr9 108116918 108117046 -15959126 - ID_B1 SINE B4 -1 223 96 2 1409 310 304 17 106 chr9 108116952 108116964 -15959208 - MT2B LTR ERVL -337 264 244 2 1409 379 330 0 11 chr9 108116964 108117059 -15959113 - PB1D10 SINE Alu -22 95 2 2 1409 310 304 17 106 chr9 108117059 108117132 -15959040 - MT2B LTR ERVL -337 243 101 2 1409 1330 71 49 5 chr9 108117230 108117414 -15958758 + B2_Mm2 SINE B2 2 193 -2 2 1409 280 246 178 55 chr9 108117479 108117625 -15958547 + RSINE1 SINE B4 1 164 -1 2 1409 213 278 56 0 chr9 108117651 108117705 -15958467 + B3 SINE B2 3 59 -157 2 1409 649 155 42 25 chr9 108117691 108117810 -15958362 + B1_Mur1 SINE Alu 29 149 0 2 1409 1968 187 32 30 chr9 108117814 108118255 -15957917 + Lx9 LINE L1 7203 7644 0 2 1409 418 336 10 22 chr9 108118280 108118442 -15957730 + B3A SINE B2 36 197 -19 2 1409 777 209 92 25 chr9 108118597 108118793 -15957379 - B3 SINE B2 -6 210 2 2 1409 315 195 171 11 chr9 108118831 108118919 -15957253 + PB1D10 SINE Alu 11 112 -5 2 1409 887 124 7 14 chr9 108119474 108119613 -15956559 + B1_Mur2 SINE Alu 10 147 -2 2 1409 726 179 67 0 chr9 108119915 108120049 -15956123 + B3 SINE B2 3 145 -71 2 1409 282 288 45 0 chr9 108120143 108120209 -15955963 + B3 SINE B2 112 180 -36 2 1409 304 167 42 0 chr9 108120906 108120978 -15955194 + MER33 DNA MER1_type 83 157 -167 2 1409 1029 118 224 6 chr9 108120986 108121156 -15955016 + B3 SINE B2 3 209 -7 2 1409 731 201 58 0 chr9 108121492 108121631 -15954541 - B1_Mus2 SINE Alu 0 147 1 2 1409 895 223 39 30 chr9 108121634 108121837 -15954335 - B3 SINE B2 -7 209 5 2 1409 388 209 8 87 chr9 108121965 108122091 -15954081 + PB1D10 SINE Alu 1 116 -1 2 1409 572 219 76 44 chr9 108122095 108122253 -15953919 + RSINE1 SINE B4 3 165 0 2 1409 460 304 96 7 chr9 108123169 108123305 -15952867 - RSINE1 SINE B4 -17 148 1 2 1409 185 274 39 0 chr9 108125768 108125819 -15950353 - L2 LINE L2 -2864 555 503 2 1409 477 0 0 0 chr9 108126006 108126059 -15950113 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1409 342 211 88 11 chr9 108126314 108126405 -15949767 - ID_B1 SINE B4 0 224 127 2 1409 269 332 59 0 chr9 108126460 108126556 -15949616 + B1F SINE Alu 13 113 -7 2 1409 377 244 0 12 chr9 108126583 108126666 -15949506 + PB1D10 SINE Alu 18 99 -18 2 1409 310 309 39 111 chr9 108126792 108126945 -15949227 + B4 SINE B4 78 219 -73 2 1409 735 161 23 0 chr9 108126820 108126950 -15949222 + B1_Mur3 SINE Alu 17 149 0 2 1409 774 174 15 114 chr9 108127048 108127249 -15948923 + B2_Mm2 SINE B2 1 181 -14 2 1409 352 232 158 55 chr9 108127279 108127443 -15948729 + B3A SINE B2 1 181 -17 2 1409 423 241 0 0 chr9 108127469 108127548 -15948624 + ID4_ SINE ID 2 80 -3 2 1409 332 233 0 72 chr9 108127579 108127676 -15948496 + PB1D9 SINE Alu 31 120 0 2 1409 230 233 0 0 chr9 108128463 108128506 -15947666 + ID4 SINE ID 8 50 -33 2 1409 597 284 14 34 chr9 108128696 108128842 -15947330 - ID_B1 SINE B4 -3 221 79 2 1409 546 216 22 88 chr9 108128885 108129022 -15947150 + B1_Mur1 SINE Alu 17 144 -5 2 1409 295 23 22 22 chr9 108129027 108129072 -15947100 + (GAA)n Simple_repeat Simple_repeat 2 46 0 2 1409 261 283 10 52 chr9 108129079 108129176 -15946996 + B1F SINE Alu 50 142 -7 2 1409 1247 14 0 0 chr9 108129187 108129325 -15946847 + B1_Mus1 SINE Alu 1 138 -10 2 1409 459 0 0 0 chr9 108129325 108129376 -15946796 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2 1409 1273 34 0 0 chr9 108129454 108129601 -15946571 + B1_Mus1 SINE Alu 2 148 0 2 1409 993 101 145 0 chr9 108129605 108129764 -15946408 - B2_Mm2 SINE B2 -13 182 1 2 1409 231 211 0 0 chr9 108129907 108129959 -15946213 - B3 SINE B2 0 216 165 2 1409 449 291 0 37 chr9 108131465 108131572 -15944600 - PB1D10 SINE Alu -4 113 11 2 1409 1139 68 7 0 chr9 108131593 108131739 -15944433 + B1_Mus2 SINE Alu 1 147 0 2 1409 22 35 0 0 chr9 108131762 108131791 -15944381 + AT_rich Low_complexity Low_complexity 1 29 0 2 1409 533 196 17 59 chr9 108131800 108131919 -15944253 + PB1D9 SINE Alu 2 115 -5 2 1409 285 346 23 38 chr9 108131950 108132082 -15944090 + RSINE1 SINE B4 29 158 -7 2 1409 395 145 0 0 chr9 108132118 108132180 -15943992 + B3 SINE B2 1 62 -154 2 1409 274 294 15 0 chr9 108132487 108132555 -15943617 + ORR1E LTR MaLR 1 69 -290 2 1409 423 0 0 0 chr9 108133312 108133359 -15942813 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 3 1409 849 154 0 59 chr9 108133392 108133544 -15942628 + B1_Mur3 SINE Alu 1 143 -6 3 1409 281 47 23 0 chr9 108133544 108133587 -15942585 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1409 647 192 29 51 chr9 108133815 108133871 -15942301 - B1_Mur2 SINE Alu 0 149 95 3 1409 1353 177 103 123 chr9 108133871 108134277 -15941895 + RMER10B LTR ERVL 1 398 0 3 1409 647 192 29 51 chr9 108134277 108134357 -15941815 - B1_Mur2 SINE Alu -55 94 16 3 176 1345 71 37 32 chr9 108134368 108134556 -15941616 - B2_Mm2 SINE B2 -2 193 5 3 1410 615 179 18 18 chr9 108134564 108134678 -15941494 - PB1D10 SINE Alu -1 116 3 3 1410 183 253 62 74 chr9 108134924 108134989 -15941183 + L2a LINE L2 3347 3412 -14 3 1410 1013 99 114 30 chr9 108134989 108135130 -15941042 + B2_Mm2 SINE B2 2 161 -34 3 1410 261 0 0 0 chr9 108135130 108135159 -15941013 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 1410 1013 99 114 30 chr9 108135159 108135183 -15940989 + B2_Mm2 SINE B2 162 181 -14 3 1410 183 253 62 74 chr9 108135183 108135198 -15940974 + L2a LINE L2 3413 3426 0 3 1410 665 274 58 16 chr9 108135938 108136127 -15940045 - B3A SINE B2 0 198 2 3 1410 1033 168 94 5 chr9 108136127 108136319 -15939853 + URR1A DNA MER1_type 2 210 -16 3 1410 556 202 105 30 chr9 108136356 108136489 -15939683 + B1_Mur2 SINE Alu 1 143 -6 3 1410 1962 158 68 11 chr9 108136619 108136971 -15939201 + ORR1D1 LTR MaLR 1 372 -2 3 1410 866 304 39 61 chr9 108137521 108137833 -15938339 + MTE2a LTR MaLR 30 334 -45 3 1410 256 224 75 50 chr9 108138627 108138707 -15937465 + ID4_ SINE ID 2 83 0 3 1410 252 238 161 62 chr9 108138762 108138892 -15937280 + B1_Mm SINE Alu 2 144 -3 3 1410 305 269 58 73 chr9 108139105 108139366 -15936806 + RMER17C LTR ERVK 84 340 -70 3 1410 483 235 19 38 chr9 108139727 108139833 -15936339 - B1F2 SINE Alu -37 112 9 3 1410 294 300 138 79 chr9 108139833 108139872 -15936300 - B4 SINE B4 -87 184 45 3 1410 429 287 88 19 chr9 108139850 108140010 -15936162 - ID_B1 SINE B4 -7 217 47 3 1410 388 252 77 56 chr9 108140032 108140175 -15935997 - B1F SINE Alu 0 149 4 3 1410 603 27 0 0 chr9 108140271 108140344 -15935828 + (GGGGA)n Simple_repeat Simple_repeat 2 74 0 3 1410 477 293 107 0 chr9 108140353 108140493 -15935679 + RSINE1 SINE B4 11 165 0 3 1410 327 256 146 0 chr9 108140609 108140691 -15935481 - PB1D9 SINE Alu -6 114 21 3 1410 493 214 61 18 chr9 108140756 108140870 -15935302 - PB1D9 SINE Alu -1 119 1 3 1410 368 202 152 0 chr9 108141772 108141851 -15934321 + B3 SINE B2 40 130 -86 3 1410 183 80 0 0 chr9 108141886 108141911 -15934261 + (ATG)n Simple_repeat Simple_repeat 3 27 0 3 1410 1220 48 7 0 chr9 108141954 108142100 -15934072 + B1_Mus2 SINE Alu 1 147 0 3 1410 261 284 0 56 chr9 108142649 108142720 -15933452 + tRNA-Ala-GCY_ tRNA tRNA 6 72 -3 3 1410 510 250 49 28 chr9 108142733 108142877 -15933295 + B1_Mur1 SINE Alu 1 147 -2 3 1410 34 65 0 0 chr9 108142982 108143044 -15933128 + AT_rich Low_complexity Low_complexity 1 62 0 3 1410 384 77 0 0 chr9 108145483 108145535 -15930637 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 3 1410 721 130 35 9 chr9 108145535 108145651 -15930521 - PB1D9 SINE Alu 0 120 2 3 1410 340 276 13 0 chr9 108145651 108145727 -15930445 + B1_Mur4 SINE Alu 15 91 -59 3 1410 235 295 66 0 chr9 108145747 108145808 -15930364 + ID_B1 SINE B4 102 166 -58 3 1410 872 278 19 19 chr9 108145840 108146053 -15930119 + B3 SINE B2 3 215 -1 3 1410 469 293 80 20 chr9 108146053 108146203 -15929969 + RSINE1 SINE B4 1 159 -6 3 1410 1217 63 6 31 chr9 108146467 108146630 -15929542 + B2_Mm2 SINE B2 2 160 -35 3 1410 21 0 0 0 chr9 108146631 108146652 -15929520 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 413 266 160 0 chr9 108147440 108147609 -15928563 + B3 SINE B2 2 197 -19 3 1410 428 218 8 18 chr9 108147692 108147714 -15928458 + PB1D10 SINE Alu 37 96 -52 3 1410 285 228 0 50 chr9 108147714 108147774 -15928398 + ID_B1 SINE B4 167 223 -1 3 1410 573 224 71 8 chr9 108148328 108148454 -15927718 + B1_Mur4 SINE Alu 5 138 -12 3 1410 246 62 0 0 chr9 108148454 108148486 -15927686 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 3 1410 1273 96 31 16 chr9 108148486 108148677 -15927495 - B2_Mm2 SINE B2 0 195 2 3 1410 34 42 0 0 chr9 108148743 108148791 -15927381 + AT_rich Low_complexity Low_complexity 1 48 0 3 1410 635 246 96 0 chr9 108148794 108148961 -15927211 - B3 SINE B2 -28 188 6 3 1410 1161 69 0 0 chr9 108149522 108149660 -15926512 + B1_Mus2 SINE Alu 1 138 -9 3 1410 257 0 30 0 chr9 108149660 108149693 -15926479 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1410 246 222 0 65 chr9 108149716 108149793 -15926379 + GA-rich Low_complexity Low_complexity 4 75 0 3 1410 432 0 0 0 chr9 108150000 108150048 -15926124 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1410 312 269 24 60 chr9 108150199 108150282 -15925890 + ID4_ SINE ID 1 80 -3 3 1410 1412 60 16 21 chr9 108150429 108150618 -15925554 + B2_Mm2 SINE B2 1 188 -7 3 1410 949 159 0 7 chr9 108150853 108150999 -15925173 + B1_Mur3 SINE Alu 2 146 -3 3 1410 1239 47 0 0 chr9 108150999 108151146 -15925026 + B1_Mus1 SINE Alu 1 148 0 3 1410 186 191 0 0 chr9 108151146 108151188 -15924984 + A-rich Low_complexity Low_complexity 1 42 0 3 1410 472 267 114 36 chr9 108151195 108151362 -15924810 + ID_B1 SINE B4 1 180 -44 3 1410 502 201 127 79 chr9 108152303 108152492 -15923680 + MT2B LTR ERVL 82 279 -322 3 1410 781 115 0 17 chr9 108152397 108152512 -15923660 + B1_Mus2 SINE Alu 27 139 -8 3 1410 613 290 47 47 chr9 108152704 108152896 -15923276 - B3A SINE B2 -6 192 1 3 1410 313 203 29 0 chr9 108153008 108153077 -15923095 + ID4 SINE ID 2 72 -11 3 1410 736 249 124 5 chr9 108153205 108153391 -15922781 - B3 SINE B2 -5 211 4 3 1410 422 149 0 0 chr9 108153474 108153541 -15922631 - B2_Mm1a SINE B2 -7 186 120 3 1410 447 196 32 11 chr9 108153604 108153691 -15922481 - B1_Mus2 SINE Alu -1 146 58 3 1410 592 184 91 16 chr9 108153691 108153831 -15922341 + B1_Mur3 SINE Alu 1 149 0 3 1410 1073 127 55 6 chr9 108153832 108154014 -15922158 + B2_Mm1t SINE B2 2 192 -1 3 1410 568 246 33 0 chr9 108154048 108154170 -15922002 + B1_Mur1 SINE Alu 13 138 -11 3 1410 216 0 0 0 chr9 108154170 108154194 -15921978 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1410 1054 101 0 0 chr9 108154452 108154600 -15921572 + B2_Mm2 SINE B2 2 149 -46 3 1410 390 90 28 2 chr9 108154615 108154723 -15921449 + B2_Mm2 SINE B2 47 193 -2 3 1410 1710 26 0 0 chr9 108154726 108154919 -15921253 + B2_Mm1a SINE B2 1 193 0 3 1410 1224 42 0 7 chr9 108154977 108155122 -15921050 - B1_Mus2 SINE Alu -2 145 2 3 1410 360 232 2 20 chr9 108155168 108155251 -15920921 + RSINE1 SINE B4 14 93 -72 3 1410 312 254 0 27 chr9 108155249 108155322 -15920850 + ID4_ SINE ID 9 79 -4 3 1410 236 260 13 52 chr9 108155254 108155331 -15920841 + B4 SINE B4 14 87 -205 3 1410 21 36 0 0 chr9 108155515 108155543 -15920629 + AT_rich Low_complexity Low_complexity 1 28 0 3 1410 1677 26 0 5 chr9 108155550 108155744 -15920428 + B2_Mm1a SINE B2 1 193 0 3 1410 183 42 0 0 chr9 108156072 108156096 -15920076 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1410 1219 102 0 33 chr9 108156107 108156290 -15919882 - B2_Mm2 SINE B2 -18 177 1 3 1410 657 201 104 0 chr9 108156295 108156429 -15919743 - B1_Mur1 SINE Alu -1 148 1 3 1410 704 225 0 101 chr9 108156434 108156508 -15919664 - ID_B1 SINE B4 -5 219 158 3 1410 858 77 173 92 chr9 108156508 108156681 -15919491 - B2_Mm2 SINE B2 -8 187 1 3 1410 704 225 0 101 chr9 108156681 108156774 -15919398 - ID_B1 SINE B4 -67 157 69 3 1410 1151 81 0 0 chr9 108156805 108156953 -15919219 - B1_Mus1 SINE Alu 0 148 1 3 1410 267 330 118 59 chr9 108156962 108157165 -15919007 - B3 SINE B2 -1 215 1 3 1410 399 100 0 0 chr9 108157177 108157247 -15918925 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1410 822 196 82 67 chr9 108157642 108157773 -15918399 - B3 SINE B2 0 216 93 3 1410 1322 117 16 0 chr9 108157773 108157961 -15918211 + B2_Mm2 SINE B2 1 191 -4 3 1410 822 196 82 67 chr9 108157961 108158037 -15918135 - B3 SINE B2 -124 92 6 3 1410 486 205 0 0 chr9 108158080 108158163 -15918009 - B1_Mur1 SINE Alu 0 149 67 3 1410 291 169 192 27 chr9 108158120 108158193 -15917979 - MT2B LTR ERVL -338 263 179 3 1410 1688 21 0 10 chr9 108158194 108158388 -15917784 + B2_Mm1a SINE B2 2 193 0 3 1410 626 244 38 0 chr9 108158480 108158611 -15917561 - RSINE1 SINE B4 -24 141 6 3 1410 629 313 64 119 chr9 108158687 108158981 -15917191 + ID_B1 SINE B4 4 292 0 3 1410 220 310 28 14 chr9 108159013 108159085 -15917087 + RSINE1 SINE B4 93 165 0 3 1410 21 0 0 0 chr9 108159133 108159154 -15917018 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 467 285 15 0 chr9 108159155 108159285 -15916887 + B1F2 SINE Alu 18 149 0 3 1410 307 204 198 0 chr9 108159709 108159792 -15916380 - PB1D7 SINE Alu -10 110 9 3 1410 796 152 50 7 chr9 108159857 108159996 -15916176 + B1_Mur4 SINE Alu 5 149 -1 3 1410 662 148 46 0 chr9 108160159 108160267 -15915905 + B1_Mus2 SINE Alu 13 125 -22 3 1410 207 268 0 0 chr9 108160267 108160308 -15915864 + polypurine Low_complexity Low_complexity 1 41 0 3 1410 489 110 0 0 chr9 108160308 108160381 -15915791 + (GGGA)n Simple_repeat Simple_repeat 4 76 0 3 1410 1103 108 0 0 chr9 108160419 108160567 -15915605 + B1_Mus1 SINE Alu 1 148 0 4 1410 256 247 153 94 chr9 108160886 108160971 -15915201 - PB1D10 SINE Alu -27 90 1 4 1410 1235 48 0 0 chr9 108160994 108161141 -15915031 - B1_Mus1 SINE Alu 0 148 2 4 1410 285 372 35 0 chr9 108161326 108161439 -15914733 + PB1D10 SINE Alu 1 117 0 4 1410 311 236 331 31 chr9 108161767 108161894 -15914278 - B2_Mm2 SINE B2 -23 172 8 4 1410 403 205 142 9 chr9 108161952 108162065 -15914107 + B3 SINE B2 88 215 -1 4 1410 559 346 31 19 chr9 108162060 108162219 -15913953 + B3A SINE B2 20 180 -18 4 1410 1045 130 0 0 chr9 108162382 108162528 -15913644 + B1_Mur4 SINE Alu 1 146 -4 4 1410 224 225 0 40 chr9 108162546 108162568 -15913604 + A-rich Low_complexity Low_complexity 6 27 0 4 1410 581 244 86 62 chr9 108162568 108162778 -15913394 + B3 SINE B2 1 215 -1 4 1410 224 225 0 40 chr9 108162778 108162829 -15913343 + A-rich Low_complexity Low_complexity 28 76 0 4 1410 301 270 193 70 chr9 108162923 108163166 -15913006 + B4A SINE B4 1 273 -19 4 1410 607 241 20 7 chr9 108163354 108163500 -15912672 + B1_Mur1 SINE Alu 2 149 0 4 1410 393 302 35 28 chr9 108163813 108163956 -15912216 + ID_B1 SINE B4 80 223 -1 4 1410 242 284 0 39 chr9 108163967 108164044 -15912128 - ID4_ SINE ID -9 74 1 4 1410 21 71 0 0 chr9 108165688 108165730 -15910442 + GC_rich Low_complexity Low_complexity 1 42 0 4 1410 205 186 0 113 chr9 108166262 108166359 -15909813 + (CCCCG)n Simple_repeat Simple_repeat 5 90 0 4 1410 600 275 0 7 chr9 108167413 108167556 -15908616 + B1F SINE Alu 1 142 -7 4 1410 333 274 119 0 chr9 108167572 108167656 -15908516 + RSINE1 SINE B4 11 104 -61 4 1410 1415 67 39 0 chr9 108167681 108167860 -15908312 + B2_Mm2 SINE B2 2 187 -8 4 1410 758 170 58 29 chr9 108167872 108168011 -15908161 + B1_Mur4 SINE Alu 1 143 -7 4 1410 1328 81 22 0 chr9 108168022 108168207 -15907965 + B2_Mm1a SINE B2 2 190 -3 4 1410 354 98 0 0 chr9 108168334 108168385 -15907787 + (T)n Simple_repeat Simple_repeat 1 51 0 4 1410 1429 75 11 0 chr9 108169484 108169672 -15906500 + B2_Mm1t SINE B2 1 190 -3 4 1410 260 200 14 0 chr9 108170376 108170446 -15905726 + CT-rich Low_complexity Low_complexity 2 72 0 4 1410 460 246 70 9 chr9 108170447 108170562 -15905610 - B1F SINE Alu -26 123 2 4 1410 520 265 162 25 chr9 108170574 108170769 -15905403 - B3 SINE B2 0 216 18 4 1410 1226 36 0 0 chr9 108170845 108170984 -15905188 - B1_Mm SINE Alu -8 139 1 4 1410 1973 110 9 59 chr9 108171204 108171543 -15904629 + RLTRETN_Mm LTR ERVK 1 322 0 4 1410 447 267 48 29 chr9 108172132 108172236 -15903936 + ID_B1 SINE B4 105 210 -14 4 1410 606 28 0 0 chr9 108172239 108172311 -15903861 + (GGAGA)n Simple_repeat Simple_repeat 5 76 0 4 1410 261 283 34 161 chr9 108172582 108172620 -15903552 - PB1D10 SINE Alu 0 117 15 4 1410 268 282 75 25 chr9 108172620 108172700 -15903472 - ID_B1 SINE B4 -45 179 96 4 1410 388 293 24 16 chr9 108172700 108172717 -15903455 - B1F2 SINE Alu -1 148 134 4 1410 225 65 0 0 chr9 108172717 108172748 -15903424 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 4 1410 388 298 26 16 chr9 108172748 108172873 -15903299 - B1F2 SINE Alu -16 133 4 4 1410 418 248 99 75 chr9 108172942 108173103 -15903069 + MT2B LTR ERVL 114 278 -323 4 1410 828 189 0 59 chr9 108172986 108173138 -15903034 + B1_Mur1 SINE Alu 6 148 -1 4 1410 890 43 9 0 chr9 108173316 108173431 -15902741 + (TTTC)n Simple_repeat Simple_repeat 3 118 0 4 1410 666 234 201 17 chr9 108173449 108173623 -15902549 - B3 SINE B2 -1 215 10 4 1410 547 254 94 12 chr9 108173662 108173833 -15902339 - Lx9 LINE L1 -151 7493 7309 4 1410 510 267 16 40 chr9 108173973 108174098 -15902074 + RSINE1 SINE B4 3 124 -41 4 1410 189 0 0 0 chr9 108174098 108174119 -15902053 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1410 1161 81 9 5 chr9 108174120 108174343 -15901829 + (GAAA)n Simple_repeat Simple_repeat 1 224 0 4 1410 1075 72 0 7 chr9 108176331 108176471 -15899701 - B1_Mm SINE Alu -8 139 1 4 1410 321 89 0 0 chr9 108176666 108176711 -15899461 + (TCC)n Simple_repeat Simple_repeat 1 45 0 4 1410 516 256 43 43 chr9 108176728 108176867 -15899305 - B1_Mur2 SINE Alu -10 139 1 4 1410 207 370 47 27 chr9 108177749 108177899 -15898273 + L2c LINE L2 2974 3126 -261 4 1410 189 0 0 0 chr9 108178067 108178088 -15898084 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1410 517 165 7 0 chr9 108178153 108178243 -15897929 - B3 SINE B2 -73 120 25 4 1410 433 259 111 8 chr9 108178262 108178379 -15897793 - B3A SINE B2 -67 131 3 4 1410 324 0 0 0 chr9 108178381 108178417 -15897755 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1410 322 232 188 20 chr9 108178419 108178520 -15897652 - B1F2 SINE Alu -13 136 19 4 1410 1063 119 11 0 chr9 108178520 108178696 -15897476 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 1410 483 177 0 0 chr9 108178697 108178793 -15897379 + CT-rich Low_complexity Low_complexity 3 98 0 4 1410 704 144 82 22 chr9 108178799 108178934 -15897238 - B1_Mur4 SINE Alu -1 149 7 4 1410 287 246 0 0 chr9 108178974 108179031 -15897141 + tRNA-Ala-GCY_ tRNA tRNA 11 67 -8 4 1410 801 127 17 0 chr9 108179261 108179379 -15896793 + PB1D9 SINE Alu 1 120 0 4 1410 303 85 0 0 chr9 108179379 108179426 -15896746 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1410 286 77 0 0 chr9 108179449 108179488 -15896684 - B3 SINE B2 -177 39 1 4 1410 244 286 0 136 chr9 108179497 108179578 -15896594 - ID_B1 SINE B4 -8 216 147 4 1410 1187 112 45 0 chr9 108179578 108179757 -15896415 - B2_Mm1t SINE B2 -5 188 2 4 1410 1241 106 32 0 chr9 108179767 108179955 -15896217 - B2_Mm2 SINE B2 -1 194 1 4 1410 771 164 168 42 chr9 108179978 108180169 -15896003 - B3 SINE B2 -1 215 1 4 1410 644 246 68 34 chr9 108180170 108180347 -15895825 - ID_B1 SINE B4 -39 185 3 4 1410 322 242 0 0 chr9 108180366 108180428 -15895744 - B1_Mur1 SINE Alu -5 144 83 4 1410 1098 121 45 17 chr9 108180439 108180615 -15895557 + B2_Mm2 SINE B2 1 181 -14 4 1410 1139 69 7 0 chr9 108180627 108180771 -15895401 - B1_Mus2 SINE Alu -1 146 2 4 1410 21 0 0 0 chr9 108180784 108180805 -15895367 + AT_rich Low_complexity Low_complexity 1 21 0 4 1410 320 230 200 96 chr9 108180808 108180825 -15895347 + B4 SINE B4 77 214 -78 4 1410 781 93 0 0 chr9 108180825 108180933 -15895239 + B1_Mm SINE Alu 28 135 -12 4 1410 207 0 0 0 chr9 108180933 108180956 -15895216 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1410 1054 207 14 9 chr9 108181470 108181680 -15894492 + B3 SINE B2 6 216 0 4 1410 1159 75 0 13 chr9 108181689 108181838 -15894334 - B1_Mus2 SINE Alu 0 147 1 4 1410 370 248 8 110 chr9 108181877 108181894 -15894278 + MT2B LTR ERVL 152 156 -445 4 1410 538 231 10 0 chr9 108181894 108181998 -15894174 + B1_Mur2 SINE Alu 3 107 -42 4 1410 1123 68 7 0 chr9 108181998 108182144 -15894028 + B1_Mus1 SINE Alu 2 148 0 4 1410 463 261 65 7 chr9 108182144 108182178 -15893994 + B1_Mur3 SINE Alu 108 148 -1 4 1410 236 264 0 0 chr9 108182178 108182231 -15893941 + B1_Mur2 SINE Alu 97 149 0 4 1410 1098 80 0 0 chr9 108182231 108182381 -15893791 + (GGAGAA)n Simple_repeat Simple_repeat 5 154 0 4 1410 234 0 0 0 chr9 108182748 108182774 -15893398 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1410 323 219 33 207 chr9 108183063 108183121 -15893051 + ID SINE ID 53 84 -140 4 1410 471 252 35 26 chr9 108183121 108183235 -15892937 + PB1D10 SINE Alu 3 117 0 4 1410 237 83 0 0 chr9 108183282 108183318 -15892854 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1410 629 174 11 38 chr9 108183317 108183502 -15892670 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1410 293 89 44 15 chr9 108183528 108183596 -15892576 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1410 354 234 50 38 chr9 108183607 108183687 -15892485 + ID2 SINE ID 3 83 0 4 1410 305 139 25 0 chr9 108183690 108183769 -15892403 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 4 1410 500 212 26 17 chr9 108183778 108183893 -15892279 + PB1D10 SINE Alu 1 116 -1 4 1410 709 211 151 5 chr9 108183899 108184085 -15892087 + B3 SINE B2 1 213 -3 4 1410 340 242 113 21 chr9 108184200 108184297 -15891875 + MTD LTR MaLR 1 106 -313 4 1410 312 27 0 0 chr9 108184358 108184395 -15891777 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1410 910 110 0 0 chr9 108184420 108184547 -15891625 + B2_Mm2 SINE B2 3 129 -66 4 1410 1440 50 16 11 chr9 108184598 108184780 -15891392 + B2_Mm2 SINE B2 1 183 -12 4 1410 757 30 0 39 chr9 108184780 108184883 -15891289 - B2_Mm1t SINE B2 -94 99 1 4 1410 21 36 0 0 chr9 108184883 108184911 -15891261 + AT_rich Low_complexity Low_complexity 1 28 0 4 1410 724 211 0 84 chr9 108184919 108185074 -15891098 + B1_Mus1 SINE Alu 6 147 -1 4 1410 487 266 8 207 chr9 108185079 108185148 -15891024 + B3 SINE B2 3 60 -156 4 1410 522 0 0 0 chr9 108185148 108185206 -15890966 + (TTC)n Simple_repeat Simple_repeat 2 59 0 4 1410 1182 43 0 0 chr9 108185206 108185344 -15890828 - B1_Mus1 SINE Alu -9 139 2 4 1410 487 266 8 207 chr9 108185344 108185429 -15890743 + B3 SINE B2 61 115 -101 4 1410 1071 114 72 0 chr9 108185429 108185595 -15890577 - B2_Mm1t SINE B2 -14 179 2 4 1410 487 266 8 207 chr9 108185595 108185694 -15890478 + B3 SINE B2 116 206 -10 4 1410 602 170 8 89 chr9 108185722 108185845 -15890327 + B3 SINE B2 1 113 -103 4 1410 570 208 100 0 chr9 108185895 108186025 -15890147 + B1_Mus1 SINE Alu 5 147 -1 4 1410 704 304 2 8 chr9 108186037 108186240 -15889932 - B3A SINE B2 -5 211 11 4 1410 1510 68 16 0 chr9 108186246 108186438 -15889734 - B2_Mm2 SINE B2 0 195 1 5 1410 502 232 287 0 chr9 108186455 108186619 -15889553 + B3 SINE B2 1 211 -5 5 1410 905 184 0 0 chr9 108186648 108186789 -15889383 - B1_Mur4 SINE Alu -8 142 2 5 1410 590 186 146 124 chr9 108186835 108187013 -15889159 + B3 SINE B2 2 183 -12 5 1410 255 317 0 12 chr9 108187131 108187214 -15888958 + ID4 SINE ID 2 83 0 5 1410 4850 74 37 3 chr9 108187435 108188082 -15888090 + L1Md_F2 LINE L1 5914 6582 0 5 1410 519 112 0 0 chr9 108188145 108188225 -15887947 + (CCCA)n Simple_repeat Simple_repeat 2 81 0 5 1410 802 134 36 22 chr9 108188298 108188435 -15887737 - B1_Mur4 SINE Alu -6 144 6 5 1410 426 212 31 85 chr9 108188319 108188448 -15887724 - MT2B LTR ERVL -323 278 157 5 1410 1207 68 0 0 chr9 108188624 108188772 -15887400 - B1_Mus1 SINE Alu 0 148 1 5 1410 772 194 186 6 chr9 108188801 108188957 -15887215 - B3 SINE B2 -31 185 2 5 1410 1465 75 16 0 chr9 108189006 108189194 -15886978 - B2_Mm2 SINE B2 -3 192 2 5 1410 1155 86 52 0 chr9 108189196 108189370 -15886802 - B2_Mm1a SINE B2 0 193 11 5 1410 443 248 15 9 chr9 108189362 108189480 -15886692 - PB1D10 SINE Alu -32 117 2 5 1410 225 0 0 0 chr9 108189481 108189506 -15886666 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1410 427 215 34 93 chr9 108189515 108189633 -15886539 - B1_Mus2 SINE Alu -1 146 36 5 1410 711 153 93 21 chr9 108189639 108189766 -15886406 + B1_Mur4 SINE Alu 1 140 -10 5 1410 252 77 0 0 chr9 108189766 108189805 -15886367 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1410 711 153 93 21 chr9 108189805 108189817 -15886355 + B1_Mur4 SINE Alu 141 150 0 5 1410 183 100 0 0 chr9 108189914 108189944 -15886228 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1410 2102 87 52 55 chr9 108189972 108190135 -15886037 - ORR1A2 LTR MaLR 0 327 169 5 1410 1666 16 16 0 chr9 108190135 108190324 -15885848 - B2_Mm1a SINE B2 0 193 2 5 1410 2102 87 52 55 chr9 108190324 108190488 -15885684 - ORR1A2 LTR MaLR -159 168 1 5 1410 288 317 0 29 chr9 108190724 108190828 -15885344 - MER57-int LTR ERV1 -293 7244 7144 5 1410 968 266 23 80 chr9 108190964 108191266 -15884906 - B4A SINE B4 0 292 8 5 1410 841 169 7 7 chr9 108191297 108191434 -15884738 - B1_Mur4 SINE Alu -13 137 1 5 1410 431 304 119 12 chr9 108191470 108191630 -15884542 - B3A SINE B2 -18 180 4 5 1410 278 301 22 67 chr9 108191705 108191794 -15884378 + MT2B LTR ERVL 154 238 -363 5 1410 473 222 52 61 chr9 108191722 108191837 -15884335 + PB1D9 SINE Alu 6 119 -1 5 1410 316 281 54 54 chr9 108191911 108192058 -15884114 - B1_Mus1 SINE Alu 0 148 2 5 1410 207 0 0 0 chr9 108192129 108192152 -15884020 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1410 530 250 0 53 chr9 108192161 108192275 -15883897 - B1_Mur1 SINE Alu -38 111 4 5 1410 727 196 14 36 chr9 108192388 108192526 -15883646 - B1_Mus2 SINE Alu -12 135 1 5 1410 34 24 0 0 chr9 108193619 108193660 -15882512 + AT_rich Low_complexity Low_complexity 1 41 0 5 1410 995 250 5 0 chr9 108193662 108193870 -15882302 - B3 SINE B2 -6 210 2 5 1410 180 0 0 0 chr9 108193889 108193909 -15882263 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5 1410 1257 27 7 0 chr9 108194030 108194176 -15881996 - B1_Mus1 SINE Alu 0 148 2 5 1410 1482 63 21 0 chr9 108194189 108194379 -15881793 - B2_Mm2 SINE B2 0 195 2 5 1410 180 0 0 0 chr9 108194383 108194403 -15881769 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1410 1167 69 7 0 chr9 108194409 108194554 -15881618 - B1_Mus2 SINE Alu -1 146 1 5 1410 398 287 83 28 chr9 108194627 108194801 -15881371 - ID_B1 SINE B4 -23 269 93 5 1410 422 271 18 45 chr9 108195095 108195207 -15880965 - ID_B1 SINE B4 -114 110 2 5 1410 1089 34 0 93 chr9 108195434 108195596 -15880576 + B1_Mm SINE Alu 1 147 0 5 1410 907 97 19 58 chr9 108196080 108196234 -15879938 - B1_Mur3 SINE Alu -1 148 1 5 1410 219 188 0 0 chr9 108196940 108196972 -15879200 + ID4_ SINE ID 5 36 -47 5 1410 421 233 231 8 chr9 108197898 108198015 -15878157 + B1_Mur1 SINE Alu 1 143 -6 5 1410 269 183 0 16 chr9 108198015 108198076 -15878096 + GA-rich Low_complexity Low_complexity 1 60 0 5 1410 225 351 63 11 chr9 108198737 108198832 -15877340 + L2b LINE L2 3274 3373 -2 5 1410 933 25 98 0 chr9 108200215 108200337 -15875835 + B1_Mus1 SINE Alu 15 148 0 5 1410 385 305 127 0 chr9 108200529 108200647 -15875525 + MER5A1 DNA MER1_type 1 133 -33 5 1410 189 0 0 0 chr9 108200695 108200716 -15875456 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1410 1406 85 5 16 chr9 108201494 108201686 -15874486 - B2_Mm2 SINE B2 -4 191 2 5 1410 463 215 53 11 chr9 108202263 108202357 -15873815 + B1F2 SINE Alu 51 148 -1 5 1410 1219 62 0 0 chr9 108202385 108202531 -15873641 + B1_Mm SINE Alu 1 146 -1 5 1410 207 105 0 26 chr9 108202546 108202605 -15873567 + (TAAAA)n Simple_repeat Simple_repeat 1 57 0 5 1410 283 337 0 3 chr9 108202621 108202720 -15873452 + ID_B1 SINE B4 74 167 -57 5 1410 202 324 13 0 chr9 108203105 108203177 -15872995 + MIR SINE MIR 56 130 -78 5 1410 216 0 0 0 chr9 108204021 108204045 -15872127 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1410 1000 47 8 0 chr9 108204047 108204175 -15871997 - B1_Mm SINE Alu 0 147 19 5 1410 506 206 63 49 chr9 108204175 108204188 -15871984 - ID_B1 SINE B4 0 222 80 5 1410 1403 83 16 0 chr9 108204680 108204872 -15871300 - B2_Mm2 SINE B2 0 195 1 5 1410 526 323 0 0 chr9 108204962 108205089 -15871083 + ID_B1 SINE B4 87 213 -11 5 1410 222 118 0 0 chr9 108206995 108207029 -15869143 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 5 1410 1161 75 0 0 chr9 108207029 108207176 -15868996 - B1_Mus1 SINE Alu 0 148 2 5 1410 211 146 0 47 chr9 108207335 108207378 -15868794 + ID4_ SINE ID 3 43 -40 5 1410 206 130 53 53 chr9 108208698 108208755 -15867417 + (CCCG)n Simple_repeat Simple_repeat 4 60 0 5 1410 29 28 0 0 chr9 108209039 108209075 -15867097 + GC_rich Low_complexity Low_complexity 1 36 0 5 1410 270 73 0 0 chr9 108210414 108210455 -15865717 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1410 21 0 0 0 chr9 108210542 108210563 -15865609 + AT_rich Low_complexity Low_complexity 1 21 0 5 1410 277 271 63 63 chr9 108210563 108210578 -15865594 - B4A SINE B4 -78 214 89 5 1410 394 252 36 36 chr9 108210578 108210689 -15865483 - B1F2 SINE Alu -35 114 4 5 1410 935 54 126 37 chr9 108211150 108211285 -15864887 + B1_Mus2 SINE Alu 1 147 0 5 1410 338 289 77 0 chr9 108211527 108211631 -15864541 + PB1D10 SINE Alu 6 117 0 5 1410 244 319 0 0 chr9 108211791 108211860 -15864312 - ID4 SINE ID -13 70 2 5 1410 228 278 20 91 chr9 108211869 108211968 -15864204 - PB1D10 SINE Alu -8 109 18 5 1410 414 285 24 122 chr9 108212000 108212164 -15864008 - B1F SINE Alu -1 148 1 5 1410 341 215 131 103 chr9 108212285 108212377 -15863795 - B1F SINE Alu 0 149 44 5 1410 1413 79 26 0 chr9 108212377 108212566 -15863606 - B2_Mm2 SINE B2 -1 194 1 5 1410 341 215 131 103 chr9 108212566 108212618 -15863554 - B1F SINE Alu -106 43 1 5 1410 182 279 0 32 chr9 108213103 108213166 -15863006 - L2a LINE L2 -456 2970 2910 5 1410 587 200 90 45 chr9 108213243 108213403 -15862769 - B1_Mur3 SINE Alu 0 149 2 5 1410 343 264 105 30 chr9 108213494 108213627 -15862545 - B1F2 SINE Alu -6 143 1 5 1410 599 258 24 0 chr9 108213632 108213756 -15862416 + B3 SINE B2 80 206 -10 5 1410 325 250 94 42 chr9 108213791 108213887 -15862285 + B1F SINE Alu 17 117 0 5 1410 258 188 14 111 chr9 108213920 108213992 -15862180 + B1_Mus1 SINE Alu 14 78 -70 5 1410 684 234 152 37 chr9 108214068 108214312 -15861860 - B4A SINE B4 -18 274 3 5 1410 1610 174 200 3 chr9 108214437 108214782 -15861390 - MTC LTR MaLR -8 413 1 5 1410 232 289 19 0 chr9 108214782 108214828 -15861344 + ID4 SINE ID 32 78 -5 5 1410 390 230 208 27 chr9 108214950 108215133 -15861039 + B3 SINE B2 1 216 0 5 1410 494 252 38 75 chr9 108215144 108215303 -15860869 + RSINE1 SINE B4 1 153 -12 5 1410 365 214 0 10 chr9 108215350 108215454 -15860718 + (TA)n Simple_repeat Simple_repeat 1 103 0 5 1410 252 0 0 0 chr9 108215506 108215534 -15860638 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1410 423 261 99 8 chr9 108215554 108215685 -15860487 + B1_Mur1 SINE Alu 1 143 -6 5 1410 486 246 107 18 chr9 108215707 108215819 -15860353 + RSINE1 SINE B4 4 125 -40 5 1410 357 82 0 0 chr9 108215849 108215898 -15860274 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1410 1166 68 7 0 chr9 108215898 108216044 -15860128 - B1_Mus1 SINE Alu 0 148 2 5 1410 284 224 147 39 chr9 108216130 108216232 -15859940 + Lx9 LINE L1 7253 7365 -279 5 1410 622 207 42 21 chr9 108216322 108216465 -15859707 - B1_Mur1 SINE Alu -2 147 2 5 1410 214 220 34 0 chr9 108216474 108216533 -15859639 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 5 1410 742 172 86 0 chr9 108216553 108216681 -15859491 - B1_Mus2 SINE Alu -8 139 1 5 1410 590 266 80 35 chr9 108217106 108217172 -15859000 + URR1B DNA MER1_type 1 77 -148 5 1410 1302 21 0 0 chr9 108217172 108217317 -15858855 + B1_Mus2 SINE Alu 3 147 0 5 1410 590 266 80 35 chr9 108217317 108217449 -15858723 + URR1B DNA MER1_type 78 207 -18 5 1410 416 293 58 32 chr9 108217844 108217999 -15858173 - RSINE1 SINE B4 -6 159 1 5 1410 1253 101 21 26 chr9 108218015 108218209 -15857963 - B2_Mm2 SINE B2 0 195 3 5 1410 387 308 29 0 chr9 108218245 108218349 -15857823 - RSINE1 SINE B4 -36 129 23 6 1410 590 99 0 11 chr9 108218381 108218473 -15857699 + (TCCC)n Simple_repeat Simple_repeat 2 92 0 6 1410 282 131 378 35 chr9 108218473 108218584 -15857588 - B2_Mm2 SINE B2 0 195 47 6 1410 1118 100 53 6 chr9 108218650 108218821 -15857351 - B2_Mm2 SINE B2 -14 181 3 6 1410 180 0 0 0 chr9 108218821 108218841 -15857331 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1410 1129 75 0 13 chr9 108218841 108218990 -15857182 - B1_Mus2 SINE Alu 0 147 1 6 1410 610 193 24 137 chr9 108218993 108219161 -15857011 - B1_Mur4 SINE Alu 0 150 2 6 1410 1097 83 0 0 chr9 108219267 108219411 -15856761 + B1_Mus1 SINE Alu 2 145 -3 6 1410 198 71 0 0 chr9 108219411 108219439 -15856733 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 6 1410 724 255 75 57 chr9 108219747 108219798 -15856374 + B3 SINE B2 1 51 -165 6 1410 932 144 71 130 chr9 108219798 108220037 -15856135 - URR1A DNA MER1_type 0 226 2 6 1410 724 255 75 57 chr9 108220037 108220197 -15855975 + B3 SINE B2 52 216 0 6 1410 840 188 28 7 chr9 108220279 108220424 -15855748 - B1_Mur3 SINE Alu 0 149 2 6 1410 21 57 0 0 chr9 108220435 108220470 -15855702 + AT_rich Low_complexity Low_complexity 1 35 0 6 1410 237 176 20 0 chr9 108221085 108221136 -15855036 + LTR82A LTR ERVL 652 703 -169 6 1410 301 162 65 64 chr9 108221244 108221332 -15854840 + B1_Mur3 SINE Alu 61 149 0 6 1410 25 0 0 0 chr9 108222273 108222298 -15853874 + AT_rich Low_complexity Low_complexity 1 25 0 6 1410 982 82 6 70 chr9 108222298 108222455 -15853717 - B1_Mus1 SINE Alu 0 148 2 6 1410 182 171 0 24 chr9 108222486 108222528 -15853644 + CT-rich Low_complexity Low_complexity 1 41 0 6 1410 960 71 0 0 chr9 108222529 108222655 -15853517 + B1_Mus1 SINE Alu 23 148 0 6 1410 388 192 17 111 chr9 108223051 108223138 -15853034 + Cheshire DNA MER1_type 826 911 -1509 6 1410 1429 58 36 26 chr9 108223138 108223331 -15852841 - B2_Mm2 SINE B2 0 195 1 6 1410 388 192 17 111 chr9 108223331 108223360 -15852812 + Cheshire DNA MER1_type 912 931 -1489 6 1410 414 0 0 0 chr9 108223392 108223438 -15852734 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1410 289 290 64 11 chr9 108223458 108223552 -15852620 - ID_B1 SINE B4 -123 101 3 6 1410 279 341 147 7 chr9 108223617 108223753 -15852419 + L2 LINE L2 1221 1375 -2044 6 1410 247 312 114 107 chr9 108223838 108223902 -15852270 - B1F SINE Alu -2 147 7 6 1410 299 276 132 0 chr9 108223902 108223978 -15852194 - ID_B1 SINE B4 -51 173 88 6 1410 653 282 23 17 chr9 108223997 108224170 -15852002 - B3 SINE B2 -30 186 13 6 1410 875 107 49 14 chr9 108224323 108224465 -15851707 + B1_Mus1 SINE Alu 2 148 0 6 1410 802 37 0 61 chr9 108224464 108224480 -15851692 - B2_Mm1t SINE B2 -14 179 166 6 1410 1477 79 16 0 chr9 108224480 108224669 -15851503 + B2_Mm2 SINE B2 1 192 -3 6 1410 802 37 0 61 chr9 108224669 108224766 -15851406 - B2_Mm1t SINE B2 -28 165 73 6 1410 858 72 136 0 chr9 108225141 108225266 -15850906 - B1_Mm SINE Alu -5 142 1 6 1410 420 260 0 103 chr9 108225266 108225382 -15850790 + PB1D9 SINE Alu 12 115 -5 6 1410 484 187 57 0 chr9 108225400 108225523 -15850649 - L1MB5 LINE L1 -269 5905 5776 6 1410 516 299 0 69 chr9 108225559 108225610 -15850562 + ID_B1 SINE B4 82 131 -93 6 1410 493 161 180 31 chr9 108225610 108225738 -15850434 + B1_Mus2 SINE Alu 1 147 0 6 1410 516 299 0 69 chr9 108225738 108225830 -15850342 + ID_B1 SINE B4 132 215 -9 6 1410 231 167 78 62 chr9 108226015 108226079 -15850093 + MT2B LTR ERVL 186 250 -351 6 1410 358 160 5 39 chr9 108226023 108226100 -15850072 + B1_Mus2 SINE Alu 41 147 0 6 1410 364 284 31 21 chr9 108226138 108226235 -15849937 - B1_Mur1 SINE Alu -13 136 39 6 1410 842 217 87 36 chr9 108226292 108226488 -15849684 - B3 SINE B2 -4 212 7 6 1410 383 161 0 0 chr9 108226668 108226724 -15849448 + PB1D9 SINE Alu 1 56 -64 6 1410 242 284 169 0 chr9 108226842 108226947 -15849225 + B1F SINE Alu 1 126 -22 6 1410 564 194 146 8 chr9 108227219 108227349 -15848823 - B1_Mur2 SINE Alu -1 148 1 6 1410 298 283 72 45 chr9 108227705 108227816 -15848356 - RSINE1 SINE B4 -48 117 4 6 1410 368 258 64 40 chr9 108228119 108228244 -15847928 - B1_Mur1 SINE Alu 0 149 22 6 1410 235 280 72 176 chr9 108228128 108228349 -15847823 - B4A SINE B4 -73 219 22 6 1410 411 259 148 0 chr9 108228344 108228452 -15847720 - B2_Mm2 SINE B2 -70 125 2 6 1410 596 184 87 14 chr9 108228495 108228633 -15847539 - B1_Mur4 SINE Alu 0 150 3 6 1410 243 0 0 0 chr9 108228648 108228675 -15847497 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1410 1285 20 7 0 chr9 108228857 108229003 -15847169 + B1_Mus1 SINE Alu 2 148 0 6 1410 222 37 0 0 chr9 108229006 108229033 -15847139 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1410 410 272 97 0 chr9 108229039 108229153 -15847019 - B1F SINE Alu -24 125 1 6 1410 243 140 0 23 chr9 108229163 108229207 -15846965 - L1M4 LINE L1 -1782 4364 4322 6 1410 263 299 130 0 chr9 108229220 108229297 -15846875 - B4A SINE B4 -203 89 3 6 1410 912 64 176 0 chr9 108229335 108229460 -15846712 - B1_Mus2 SINE Alu 0 147 1 6 1410 483 200 89 0 chr9 108229462 108229552 -15846620 - B1_Mur1 SINE Alu 0 149 52 6 1410 1519 52 21 0 chr9 108229616 108229807 -15846365 - B2_Mm2 SINE B2 0 195 1 6 1410 1111 55 7 33 chr9 108230277 108230428 -15845744 - B1_Mus2 SINE Alu 0 147 1 6 1410 594 299 12 48 chr9 108230842 108231007 -15845165 + ID_B1 SINE B4 60 218 -6 6 1410 241 244 0 0 chr9 108231034 108231079 -15845093 + B1F2 SINE Alu 6 50 -99 6 1410 435 19 0 0 chr9 108231236 108231288 -15844884 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1410 342 330 18 36 chr9 108231661 108231771 -15844401 + ID_B1 SINE B4 1 108 -116 6 1410 1212 55 0 0 chr9 108231865 108232011 -15844161 + B1_Mus1 SINE Alu 1 146 -2 6 1410 282 56 0 0 chr9 108232011 108232047 -15844125 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 6 1410 508 223 101 95 chr9 108232318 108232374 -15843798 - Lx9 LINE L1 -6 7638 7589 6 1410 550 223 275 39 chr9 108232374 108232556 -15843616 - URR1A DNA MER1_type -1 225 1 6 1410 508 223 101 95 chr9 108232556 108232653 -15843519 - Lx9 LINE L1 -56 7588 7471 6 1410 1227 21 0 34 chr9 108232653 108232802 -15843370 + B1_Mus2 SINE Alu 3 146 -1 6 1410 508 223 101 95 chr9 108232802 108232974 -15843198 - Lx9 LINE L1 -174 7470 7311 6 1410 659 142 158 0 chr9 108233445 108233572 -15842600 + B1_Mus1 SINE Alu 2 148 0 6 1410 883 57 145 0 chr9 108233964 108234088 -15842084 - B1_Mus2 SINE Alu -1 146 5 6 1410 1081 133 56 0 chr9 108234137 108234317 -15841855 + B2_Mm1a SINE B2 1 190 -3 6 1410 865 103 14 12 chr9 108234446 108234583 -15841589 - B2_Mm2 SINE B2 -10 206 60 6 1410 301 246 31 0 chr9 108234632 108234697 -15841475 + RSINE1 SINE B4 3 69 -96 6 1410 1129 12 110 52 chr9 108234675 108234848 -15841324 + MT-int LTR MaLR 859 1041 -57 6 1410 688 150 16 40 chr9 108234996 108235121 -15841051 + B1_Mus1 SINE Alu 27 148 0 6 1410 578 299 52 0 chr9 108235135 108235268 -15840904 + B1F2 SINE Alu 1 140 -9 6 1410 511 45 45 0 chr9 108235268 108235335 -15840837 + B1_Mus2 SINE Alu 1 70 -77 6 1410 733 123 18 0 chr9 108235517 108235631 -15840541 + PB1D9 SINE Alu 5 120 0 6 1410 197 65 0 31 chr9 108235636 108235668 -15840504 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 6 1410 301 305 42 10 chr9 108235807 108235903 -15840269 + ID_B1 SINE B4 123 221 -3 6 1410 1239 102 51 0 chr9 108236214 108236391 -15839781 + B2_Mm2 SINE B2 2 187 -8 6 1410 225 83 0 0 chr9 108236391 108236427 -15839745 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 6 1410 687 193 0 0 chr9 108236924 108237033 -15839139 - B1_Mus1 SINE Alu -32 116 8 6 1410 362 341 63 46 chr9 108237033 108237092 -15839080 - B4 SINE B4 -79 197 36 6 1410 501 296 72 7 chr9 108237129 108237282 -15838890 - RSINE1 SINE B4 -1 164 2 6 1410 1119 95 14 0 chr9 108238111 108238259 -15837913 - B1_Mur4 SINE Alu 0 150 1 6 1410 1466 53 27 0 chr9 108238334 108238521 -15837651 + B2_Mm1t SINE B2 1 192 -1 6 1410 620 180 197 0 chr9 108238566 108238688 -15837484 + B1_Mus2 SINE Alu 2 147 0 6 1410 1112 129 42 16 chr9 108238690 108238879 -15837293 + B2_Mm2 SINE B2 2 195 0 6 1410 308 111 19 0 chr9 108238918 108238972 -15837200 + (TTTTC)n Simple_repeat Simple_repeat 1 55 0 6 1410 321 135 0 0 chr9 108239816 108239868 -15836304 + (T)n Simple_repeat Simple_repeat 1 52 0 6 1410 1177 61 0 0 chr9 108240438 108240585 -15835587 + B1_Mm SINE Alu 1 147 0 6 1410 556 227 7 50 chr9 108240819 108240958 -15835214 + B1_Mur3 SINE Alu 1 133 -16 6 1410 280 120 80 0 chr9 108241008 108241058 -15835114 + B1_Mur1 SINE Alu 96 149 0 6 1410 230 239 221 15 chr9 108241087 108241155 -15835017 + RSINE1 SINE B4 55 136 -29 6 1410 232 305 108 12 chr9 108243642 108243725 -15832447 - B1_Mur4 SINE Alu -31 119 29 6 1410 257 235 53 96 chr9 108243715 108243809 -15832363 - PB1D10 SINE Alu -23 94 5 6 1410 273 234 80 42 chr9 108243737 108243859 -15832313 - ID_B1 SINE B4 -126 166 44 6 1410 253 299 0 29 chr9 108243847 108243916 -15832256 - ID_B1 SINE B4 -67 157 91 6 1410 604 186 29 95 chr9 108243944 108244081 -15832091 - B1_Mur1 SINE Alu 0 149 22 6 1410 468 35 0 0 chr9 108244512 108244570 -15831602 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1410 427 252 83 62 chr9 108245291 108245435 -15830737 - B1F SINE Alu 0 149 3 6 1410 378 0 0 0 chr9 108245451 108245493 -15830679 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1410 369 0 0 0 chr9 108245493 108245533 -15830639 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1410 504 119 17 8 chr9 108245574 108245693 -15830479 + (TG)n Simple_repeat Simple_repeat 1 120 0 7 1410 306 276 92 0 chr9 108245803 108245901 -15830271 - B1F SINE Alu -7 142 36 7 1410 746 197 15 0 chr9 108245976 108246108 -15830064 + B1_Mus2 SINE Alu 9 142 -5 7 1410 231 36 0 0 chr9 108246133 108246161 -15830011 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 7 1410 621 219 132 22 chr9 108246162 108246344 -15829828 - B3 SINE B2 -14 202 1 7 1410 1145 88 0 0 chr9 108246480 108246627 -15829545 + B1_Mus1 SINE Alu 1 147 -1 7 1410 454 280 68 0 chr9 108246776 108246894 -15829278 - RSINE1 SINE B4 -33 132 7 7 1410 189 0 0 0 chr9 108246928 108246949 -15829223 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1410 254 228 139 0 chr9 108247065 108247144 -15829028 - PB1D9 SINE Alu -1 119 30 7 1410 1604 42 0 0 chr9 108247275 108247464 -15828708 + B2_Mm1t SINE B2 2 190 -3 7 1410 228 229 0 0 chr9 108247902 108247950 -15828222 + T-rich Low_complexity Low_complexity 2 49 0 7 1410 911 75 0 210 chr9 108247951 108248049 -15828123 - B1_Mus1 SINE Alu 0 148 57 7 1410 1156 75 0 0 chr9 108248049 108248196 -15827976 + B1_Mus2 SINE Alu 1 147 0 7 1410 911 75 0 210 chr9 108248196 108248283 -15827889 - B1_Mus1 SINE Alu -92 56 2 7 1410 662 113 28 0 chr9 108248283 108248389 -15827783 + URR1B DNA MER1_type 117 225 0 7 1410 393 264 130 14 chr9 108248389 108248486 -15827686 + B3 SINE B2 98 211 -5 7 1410 1105 70 28 0 chr9 108248624 108248766 -15827406 + B1_Mus2 SINE Alu 2 147 0 7 1410 641 47 0 12 chr9 108248891 108248939 -15827233 + (TTC)n Simple_repeat Simple_repeat 1 48 0 7 1410 1172 106 6 0 chr9 108248939 108249118 -15827054 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1410 641 47 0 12 chr9 108249118 108249155 -15827017 + (TTC)n Simple_repeat Simple_repeat 3 39 0 7 1410 865 116 47 0 chr9 108249157 108249286 -15826886 - B1_Mur4 SINE Alu -13 137 3 7 1410 504 248 83 0 chr9 108249449 108249582 -15826590 + B1_Mur3 SINE Alu 4 147 -2 7 1410 466 223 167 35 chr9 108249595 108249739 -15826433 - RSINE1 SINE B4 0 165 3 7 1410 202 214 0 0 chr9 108250144 108250186 -15825986 + (CGTG)n Simple_repeat Simple_repeat 3 44 0 7 1410 204 40 0 0 chr9 108250934 108250959 -15825213 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 7 1410 314 240 113 57 chr9 108251424 108251530 -15824642 + PB1D10 SINE Alu 6 117 0 7 1410 469 291 40 64 chr9 108251612 108251814 -15824358 + B3A SINE B2 2 198 0 7 1410 687 145 145 0 chr9 108251819 108251943 -15824229 + B1_Mus1 SINE Alu 1 142 -6 7 1410 478 247 10 0 chr9 108251962 108252059 -15824113 + B1_Mur2 SINE Alu 1 98 -51 7 1410 581 213 39 16 chr9 108252139 108252268 -15823904 - B1F2 SINE Alu -2 147 16 7 1410 232 170 64 0 chr9 108252287 108252334 -15823838 + GA-rich Low_complexity Low_complexity 3 52 0 7 1410 635 282 79 12 chr9 108252342 108252507 -15823665 - B3A SINE B2 -22 176 1 7 1410 707 229 0 34 chr9 108252515 108252664 -15823508 - B1_Mur1 SINE Alu -5 144 1 7 1410 363 281 112 32 chr9 108252667 108252792 -15823380 - ID_B1 SINE B4 0 224 90 7 1410 866 174 0 0 chr9 108252920 108253052 -15823120 + B1_Mus2 SINE Alu 9 140 -7 7 1410 711 235 36 12 chr9 108253578 108253745 -15822427 - ORR1D1 LTR MaLR -2 382 212 7 1410 1031 103 7 7 chr9 108253745 108253892 -15822280 + B2_Mm1a SINE B2 1 147 -46 7 1410 782 208 61 11 chr9 108253881 108254061 -15822111 - ORR1D1 LTR MaLR -185 189 1 7 1410 211 306 27 14 chr9 108254125 108254198 -15821974 - RSINE1 SINE B4 0 165 92 7 1410 382 288 70 80 chr9 108254241 108254441 -15821731 - B3A SINE B2 0 198 1 7 1410 812 196 7 0 chr9 108254639 108254787 -15821385 - B1_Mur3 SINE Alu 0 149 1 7 1410 324 0 0 0 chr9 108255039 108255075 -15821097 + (CAGG)n Simple_repeat Simple_repeat 2 37 0 7 1410 456 294 5 128 chr9 108255101 108255288 -15820884 - RSINE1 SINE B4 0 165 2 7 1410 271 289 0 37 chr9 108255304 108255412 -15820760 - PB1D10 SINE Alu -5 112 9 7 1410 429 287 93 22 chr9 108255420 108255559 -15820613 - B1F1 SINE Alu 0 149 1 7 1410 252 310 9 83 chr9 108255463 108255572 -15820600 - MT2B2 LTR ERVL -332 252 152 7 1410 343 245 129 27 chr9 108255624 108255771 -15820401 - RSINE1 SINE B4 -1 164 3 7 1410 590 185 0 9 chr9 108255893 108256002 -15820170 - PB1D9 SINE Alu 0 120 13 7 1410 283 317 37 46 chr9 108255916 108256025 -15820147 - B4 SINE B4 -105 187 80 7 1410 415 309 9 0 chr9 108256059 108256169 -15820003 - ID_B1 SINE B4 0 224 114 7 1410 269 367 73 0 chr9 108256246 108256355 -15819817 - ID_B1 SINE B4 -26 198 82 7 1410 254 206 29 0 chr9 108256392 108256460 -15819712 + (TGG)n Simple_repeat Simple_repeat 1 70 0 7 1410 1201 48 0 0 chr9 108256942 108257089 -15819083 - B1_Mus2 SINE Alu 0 147 1 7 1410 512 269 0 8 chr9 108257089 108257208 -15818964 - PB1D9 SINE Alu -1 119 1 7 1410 21 0 0 0 chr9 108257210 108257231 -15818941 + AT_rich Low_complexity Low_complexity 1 21 0 7 1410 1001 71 29 0 chr9 108257488 108257628 -15818544 - B2_Mm2 SINE B2 0 195 52 7 1410 359 42 21 0 chr9 108257817 108257865 -15818307 + B1_Mus2 SINE Alu 98 146 -1 7 1410 348 177 31 31 chr9 108257886 108257950 -15818222 - RSINE1 SINE B4 -99 66 3 7 1410 451 200 140 0 chr9 108257970 108258070 -15818102 + ID_B1 SINE B4 103 216 -8 7 1410 258 263 169 34 chr9 108258070 108258082 -15818090 + B1F SINE Alu 52 149 0 7 1410 631 223 16 0 chr9 108258190 108258311 -15817861 - B1_Mur2 SINE Alu -26 123 1 7 1410 404 285 32 0 chr9 108258378 108258501 -15817671 - PB1 SINE Alu 0 127 1 7 1410 492 202 139 66 chr9 108259023 108259145 -15817027 - B1_Mus1 SINE Alu 0 148 18 7 1410 291 261 156 25 chr9 108259069 108259191 -15816981 - MT2B LTR ERVL -339 262 125 7 1410 241 240 113 12 chr9 108259161 108259259 -15816913 - PB1D10 SINE Alu -1 119 10 7 1410 412 333 14 41 chr9 108259518 108259665 -15816507 - B1F SINE Alu 0 149 7 7 1410 591 135 0 0 chr9 108259677 108259773 -15816399 + (TTTTC)n Simple_repeat Simple_repeat 3 98 0 7 1410 1260 83 66 0 chr9 108259782 108259963 -15816209 - B2_Mm2 SINE B2 -1 194 2 7 1410 285 100 0 0 chr9 108260264 108260314 -15815858 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 7 1410 826 194 7 0 chr9 108260323 108260462 -15815710 - B1_Mus1 SINE Alu -6 142 3 7 1410 448 329 15 0 chr9 108261497 108261634 -15814538 - ID_B1 SINE B4 -7 217 79 7 1410 189 0 0 0 chr9 108261640 108261661 -15814511 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1410 1224 61 0 0 chr9 108261968 108262116 -15814056 - B1_Mus1 SINE Alu 0 148 1 7 1410 243 310 25 74 chr9 108262158 108262280 -15813892 + MT2B LTR ERVL 160 275 -326 7 1410 575 195 113 17 chr9 108262185 108262300 -15813872 + B1_Mur1 SINE Alu 22 147 -2 7 1410 416 221 114 9 chr9 108262933 108263038 -15813134 + PB1D7 SINE Alu 5 120 0 7 1410 783 273 41 41 chr9 108263045 108263335 -15812837 + B4A SINE B4 3 292 0 7 1410 892 243 32 55 chr9 108263393 108263484 -15812688 + B3 SINE B2 3 92 -124 7 1410 1430 190 100 65 chr9 108263484 108263855 -15812317 - ORR1C2 LTR MaLR 0 384 1 7 1410 892 243 32 55 chr9 108263855 108263981 -15812191 + B3 SINE B2 93 215 -1 7 1410 333 235 12 24 chr9 108264032 108264115 -15812057 - ID4 SINE ID 0 83 2 7 1410 228 255 21 0 chr9 108264137 108264184 -15811988 - PB1 SINE Alu -8 119 72 7 1410 236 226 0 31 chr9 108264500 108264564 -15811608 + T-rich Low_complexity Low_complexity 5 66 0 7 1410 1197 68 0 0 chr9 108264565 108264712 -15811460 - B1_Mus1 SINE Alu -1 147 1 7 1410 245 276 218 0 chr9 108264747 108264834 -15811338 + ID_B1 SINE B4 78 183 -41 7 1410 351 0 0 0 chr9 108265430 108265469 -15810703 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1411 451 248 138 8 chr9 108265752 108265882 -15810290 + ID_B1 SINE B4 78 224 0 7 1411 707 280 73 25 chr9 108265897 108266172 -15810000 + B4A SINE B4 3 290 -2 7 1411 225 0 0 0 chr9 108266199 108266224 -15809948 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7 1411 482 277 205 69 chr9 108266284 108266550 -15809622 + MLT1D LTR MaLR 89 411 -94 7 1411 657 210 153 21 chr9 108266550 108266740 -15809432 - B3 SINE B2 0 216 2 7 1411 482 277 205 69 chr9 108266740 108266834 -15809338 + MLT1D LTR MaLR 412 498 -7 7 1411 670 156 238 72 chr9 108266889 108267047 -15809125 + URR1B DNA MER1_type 1 199 -26 7 1411 1028 98 0 0 chr9 108267047 108267180 -15808992 + B1_Mus1 SINE Alu 2 134 -14 7 1411 670 156 238 72 chr9 108267180 108267214 -15808958 + URR1B DNA MER1_type 200 225 0 7 1411 289 264 62 154 chr9 108269516 108269646 -15806526 + ID_B1 SINE B4 55 172 -52 7 1411 284 305 95 0 chr9 108269569 108269664 -15806508 + PB1D10 SINE Alu 7 110 -7 7 1411 351 320 32 45 chr9 108269800 108269957 -15806215 - MER77 LTR ERVL -4 603 449 7 1411 329 299 41 0 chr9 108269986 108270083 -15806089 + B1F1 SINE Alu 17 117 -32 7 1411 584 241 35 70 chr9 108270351 108270494 -15805678 - RSINE1 SINE B4 -12 153 16 7 1411 510 261 68 56 chr9 108270576 108270738 -15805434 + RSINE1 SINE B4 2 165 0 7 1411 224 164 73 0 chr9 108270843 108270898 -15805274 + T-rich Low_complexity Low_complexity 2 60 0 7 1411 825 193 0 7 chr9 108270911 108271057 -15805115 - B1_Mur2 SINE Alu -4 145 1 7 1411 853 139 14 14 chr9 108271081 108271220 -15804952 - B1_Mm SINE Alu 0 147 9 8 1411 1045 63 27 20 chr9 108271294 108271440 -15804732 - B1_Mus2 SINE Alu 0 147 1 8 1411 1273 120 10 5 chr9 108271440 108271631 -15804541 - B2_Mm1t SINE B2 0 193 1 8 1411 484 220 210 8 chr9 108271759 108271878 -15804294 - B1_Mus1 SINE Alu -5 143 1 8 1411 1416 89 16 5 chr9 108271890 108272083 -15804089 - B2_Mm2 SINE B2 0 195 1 8 1411 831 233 7 0 chr9 108272395 108272545 -15803627 + B3 SINE B2 1 151 -65 8 1411 207 0 0 0 chr9 108272558 108272581 -15803591 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1411 222 286 0 31 chr9 108273544 108273609 -15802563 - ID4 SINE ID -18 65 3 8 1411 436 280 28 14 chr9 108273853 108273998 -15802174 - B1F SINE Alu -2 147 1 8 1411 258 293 60 24 chr9 108274003 108274087 -15802085 - ID_B1 SINE B4 -11 213 127 8 1411 1032 127 71 11 chr9 108274308 108274491 -15801681 + B2_Mm2 SINE B2 2 195 0 8 1411 910 170 0 0 chr9 108274507 108274654 -15801518 + B1_Mus1 SINE Alu 2 148 0 8 1411 464 261 29 36 chr9 108275503 108275642 -15800530 + B1_Mur1 SINE Alu 2 139 -10 8 1411 939 143 14 0 chr9 108277081 108277228 -15798944 + B1_Mur4 SINE Alu 2 150 0 8 1411 246 191 125 16 chr9 108277589 108277653 -15798519 + PB1D9 SINE Alu 26 96 -24 8 1411 504 131 23 35 chr9 108277662 108277749 -15798423 + B1_Mur3 SINE Alu 21 106 -43 8 1411 426 167 14 14 chr9 108277747 108277820 -15798352 + RSINE1 SINE B4 58 130 -35 8 1411 204 125 0 0 chr9 108277828 108277860 -15798312 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1411 948 220 68 85 chr9 108277860 108278028 -15798144 + B4A SINE B4 49 230 -62 8 1411 1556 37 27 0 chr9 108278028 108278216 -15797956 + B2_Mm1t SINE B2 1 193 0 8 1411 948 220 68 85 chr9 108278216 108278295 -15797877 + B4A SINE B4 231 292 0 8 1411 478 219 35 1 chr9 108278334 108278474 -15797698 - B1_Mur2 SINE Alu 0 150 3 8 1411 216 180 35 75 chr9 108278476 108278549 -15797623 - MIRb SINE MIR -37 225 156 8 1411 380 305 35 14 chr9 108278732 108278875 -15797297 + RSINE1 SINE B4 5 150 -15 8 1411 470 276 73 59 chr9 108278950 108279159 -15797013 + B3 SINE B2 1 216 0 8 1411 545 257 44 7 chr9 108279478 108279615 -15796557 + B1F2 SINE Alu 2 143 -6 8 1411 1159 61 7 20 chr9 108279815 108279965 -15796207 - B1_Mus1 SINE Alu 0 148 1 8 1411 702 286 91 0 chr9 108280020 108280195 -15795977 + ID_B1 SINE B4 6 196 -28 8 1411 1291 34 0 0 chr9 108280443 108280590 -15795582 - B1_Mus1 SINE Alu 0 148 2 8 1411 763 264 27 50 chr9 108281148 108281367 -15794805 + ID_B1 SINE B4 1 214 -10 8 1411 392 324 20 53 chr9 108282392 108282542 -15793630 - RSINE1 SINE B4 -2 163 19 8 1411 222 171 0 0 chr9 108282863 108282904 -15793268 + (TGG)n Simple_repeat Simple_repeat 3 43 0 8 1411 791 100 19 1 chr9 108282904 108283020 -15793152 + B1_Mur4 SINE Alu 6 127 -21 8 1411 261 0 0 0 chr9 108283020 108283049 -15793123 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1411 767 142 58 22 chr9 108283049 108283069 -15793103 + B1_Mus1 SINE Alu 128 147 -1 8 1411 1465 75 0 5 chr9 108283216 108283403 -15792769 + B2_Mm2 SINE B2 1 186 -9 8 1411 466 292 66 0 chr9 108283482 108283619 -15792553 - B1F SINE Alu -3 146 1 8 1411 1218 28 7 0 chr9 108284119 108284262 -15791910 - B1_Mus2 SINE Alu 0 147 4 8 1411 619 253 132 0 chr9 108284276 108284458 -15791714 - B3 SINE B2 -10 206 1 8 1411 482 276 9 0 chr9 108284466 108284571 -15791601 - ID_B1 SINE B4 -37 187 82 8 1411 183 184 0 0 chr9 108284913 108284951 -15791221 + C-rich Low_complexity Low_complexity 5 42 0 8 1411 24 0 0 0 chr9 108284959 108284983 -15791189 + AT_rich Low_complexity Low_complexity 1 24 0 8 1411 29 0 0 45 chr9 108284993 108285020 -15791152 + AT_rich Low_complexity Low_complexity 1 26 0 8 1411 541 127 88 35 chr9 108285020 108285134 -15791038 - PB1D9 SINE Alu 0 120 1 8 1411 29 0 0 45 chr9 108285134 108285150 -15791022 + AT_rich Low_complexity Low_complexity 1 16 0 8 1411 1521 63 0 5 chr9 108285156 108285348 -15790824 + B2_Mm2 SINE B2 1 191 -4 8 1411 540 241 179 28 chr9 108285352 108285531 -15790641 - B3 SINE B2 -9 207 2 8 1411 989 209 56 0 chr9 108285551 108285747 -15790425 - B3 SINE B2 -9 207 1 8 1411 857 278 5 10 chr9 108285868 108286068 -15790104 - B3 SINE B2 -17 199 1 8 1411 767 60 17 0 chr9 108286094 108286208 -15789964 - B1_Mus2 SINE Alu 0 149 30 8 1411 283 186 133 67 chr9 108287608 108287683 -15788489 + PB1D10 SINE Alu 1 80 -37 8 1411 460 180 205 0 chr9 108287720 108287842 -15788330 - B1_Mus2 SINE Alu 0 147 1 8 1411 345 269 70 53 chr9 108287883 108287997 -15788175 + RSINE1 SINE B4 3 118 -47 8 1411 350 171 37 62 chr9 108288122 108288203 -15787969 + MT2B LTR ERVL 186 264 -337 8 1411 802 40 0 0 chr9 108288137 108288238 -15787934 + B1_Mus2 SINE Alu 47 147 0 8 1411 744 235 91 67 chr9 108288407 108288661 -15787511 - RMER17C-int LTR ERVK -354 2884 2627 8 1411 357 24 0 0 chr9 108288661 108288703 -15787469 + (TTA)n Simple_repeat Simple_repeat 2 43 0 8 1411 1236 42 0 0 chr9 108288704 108288847 -15787325 - B1_Mus2 SINE Alu -4 143 1 8 1411 339 225 153 117 chr9 108288847 108288979 -15787193 - RMER17C-int LTR ERVK -2254 3883 3754 8 1411 1634 252 94 34 chr9 108289277 108289925 -15786247 - MYSERV6-int LTR ERVK -290 8669 8092 8 1411 579 200 189 5 chr9 108289900 108290091 -15786081 - MYSERV6-int LTR ERVK -3380 2142 1917 8 1411 182 311 16 32 chr9 108290204 108290267 -15785905 + L3 LINE CR1 3813 3874 -615 8 1411 218 289 38 50 chr9 108290880 108290960 -15785212 - B1F SINE Alu -10 139 61 8 1411 460 118 0 0 chr9 108291039 108291107 -15785065 - B1_Mus2 SINE Alu 0 147 80 8 1411 443 317 35 14 chr9 108291312 108291456 -15784716 - B1F SINE Alu 0 149 3 8 1411 232 297 13 13 chr9 108291572 108291647 -15784525 - ID4_ SINE ID -8 75 1 8 1411 422 207 247 51 chr9 108291973 108292131 -15784041 + B3A SINE B2 4 192 -1 8 1411 497 198 62 0 chr9 108292133 108292229 -15783943 + B1_Mm SINE Alu 3 104 -43 8 1411 612 245 45 32 chr9 108292243 108292399 -15783773 + RSINE1 SINE B4 8 165 0 8 1411 36 0 0 21 chr9 108292403 108292421 -15783751 + AT_rich Low_complexity Low_complexity 1 18 0 8 1411 1380 83 11 0 chr9 108292421 108292602 -15783570 + B2_Mm1a SINE B2 2 184 -9 8 1411 36 0 0 21 chr9 108292602 108292630 -15783542 + AT_rich Low_complexity Low_complexity 1 28 0 8 1411 380 180 315 0 chr9 108292744 108292855 -15783317 + B1_Mus1 SINE Alu 3 148 0 8 1411 428 217 11 32 chr9 108292886 108292981 -15783191 + BC1_Mm scRNA scRNA 1 93 -59 8 1411 401 290 50 14 chr9 108293692 108293832 -15782340 - B1_Mm SINE Alu -2 145 1 8 1411 458 182 19 66 chr9 108293843 108293949 -15782223 - PB1D7 SINE Alu 0 120 20 8 1411 577 91 11 11 chr9 108296031 108296120 -15780052 + PB1D9 SINE Alu 32 120 0 8 1411 231 254 33 17 chr9 108296324 108296384 -15779788 - tRNA-Ala-GCG tRNA tRNA -9 66 6 8 1411 596 180 101 187 chr9 108296415 108296613 -15779559 - B3 SINE B2 -11 184 4 8 1411 677 151 77 31 chr9 108296958 108297088 -15779084 + B1_Mus1 SINE Alu 1 136 -12 8 1411 504 214 8 25 chr9 108297402 108297522 -15778650 + PB1D9 SINE Alu 2 119 -1 8 1411 288 0 0 0 chr9 108297951 108297983 -15778189 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1411 547 229 71 7 chr9 108298056 108298197 -15777975 + B1_Mur4 SINE Alu 1 150 0 8 1411 636 259 24 58 chr9 108298264 108298469 -15777703 - B3A SINE B2 0 198 1 8 1411 1092 168 29 24 chr9 108298472 108298680 -15777492 - B3 SINE B2 0 216 8 8 1411 312 343 9 0 chr9 108298753 108298861 -15777311 - PB1D10 SINE Alu -7 110 2 8 1411 507 155 207 0 chr9 108301024 108301140 -15775032 - B1_Mur2 SINE Alu 0 149 10 8 1411 278 250 69 0 chr9 108301323 108301335 -15774837 + ID SINE ID 65 81 -143 8 1411 322 290 84 0 chr9 108301335 108301442 -15774730 + PB1D10 SINE Alu 1 116 -1 8 1411 517 349 6 17 chr9 108301473 108301651 -15774521 + B3A SINE B2 20 195 -3 8 1411 721 107 62 62 chr9 108301657 108301787 -15774385 + B1_Mur4 SINE Alu 3 132 -18 8 1411 376 201 51 68 chr9 108301863 108301965 -15774207 + ID_B1 SINE B4 81 175 -49 8 1411 1003 172 121 5 chr9 108301965 108302164 -15774008 + URR1A DNA MER1_type 3 224 -2 8 1411 357 244 93 36 chr9 108302185 108302325 -15773847 + L1MD3 LINE L1 7527 7674 -321 8 1411 259 240 173 16 chr9 108302458 108302585 -15773587 + L1MD3 LINE L1 7849 7995 0 8 1411 1280 78 39 11 chr9 108302595 108302776 -15773396 + B2_Mm2 SINE B2 1 186 -9 8 1411 564 213 81 0 chr9 108305058 108305194 -15770978 - B1_Mus1 SINE Alu -1 147 1 8 1411 203 324 42 0 chr9 108305261 108305332 -15770840 - L2b LINE L2 -43 3332 3259 8 1411 288 120 0 0 chr9 108305732 108305782 -15770390 + (A)n Simple_repeat Simple_repeat 1 50 0 8 1411 798 57 9 0 chr9 108305942 108306048 -15770124 - BC1_Mm scRNA scRNA -45 107 1 8 1411 198 71 0 0 chr9 108306311 108306339 -15769833 + (TTG)n Simple_repeat Simple_repeat 1 28 0 8 1411 980 116 0 7 chr9 108306341 108306480 -15769692 - B1_Mus2 SINE Alu -7 140 3 8 1411 428 301 20 15 chr9 108306528 108306658 -15769514 + PB1D10 SINE Alu 18 149 0 8 1411 843 231 0 12 chr9 108308342 108308504 -15767668 + B3 SINE B2 34 193 -23 8 1411 301 237 13 13 chr9 108308504 108308581 -15767591 + B1F SINE Alu 73 149 0 8 1411 268 308 43 32 chr9 108308815 108308909 -15767263 + PB1 SINE Alu 9 103 -24 8 1411 311 65 22 0 chr9 108309381 108309427 -15766745 + (CATA)n Simple_repeat Simple_repeat 2 48 0 9 1411 1008 46 0 8 chr9 108309521 108309652 -15766520 + B1_Mus1 SINE Alu 9 138 -10 9 1411 404 0 39 0 chr9 108309652 108309703 -15766469 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 9 1411 265 336 9 0 chr9 108309737 108309850 -15766322 + CT-rich Low_complexity Low_complexity 1 114 0 9 1411 214 146 42 0 chr9 108309972 108310020 -15766152 + T-rich Low_complexity Low_complexity 2 51 0 9 1411 717 169 49 14 chr9 108310022 108310166 -15766006 - B1_Mur4 SINE Alu 0 150 2 9 1411 336 190 37 25 chr9 108310339 108310420 -15765752 - ID_B1 SINE B4 -2 222 141 9 1411 825 155 49 7 chr9 108310479 108310622 -15765550 - B1_Mur4 SINE Alu 0 150 2 9 1411 832 165 5 102 chr9 108310626 108310776 -15765396 - B2_Mm2 SINE B2 -18 177 37 9 1411 326 23 0 23 chr9 108310776 108310820 -15765352 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 9 1411 1199 22 0 0 chr9 108310820 108310954 -15765218 - B1_Mus1 SINE Alu -13 135 2 9 1411 832 165 5 102 chr9 108310954 108310998 -15765174 - B2_Mm2 SINE B2 -159 36 2 9 1411 622 176 46 0 chr9 108311009 108311117 -15765055 - PB1D9 SINE Alu -7 113 1 9 1411 1476 167 239 22 chr9 108311185 108311541 -15764631 - RLTR28 LTR ERVL 0 524 92 9 1411 959 120 7 0 chr9 108311551 108311693 -15764479 + B2_Mm1t SINE B2 37 179 -14 9 1411 396 144 254 33 chr9 108311725 108311847 -15764325 + B2_Mm2 SINE B2 47 195 0 9 1411 626 136 19 0 chr9 108311851 108311954 -15764218 - RLTR28 LTR ERVL -376 105 1 9 1411 390 236 41 91 chr9 108311954 108312050 -15764122 - B1F2 SINE Alu -58 91 2 9 1411 369 315 36 18 chr9 108312160 108312270 -15763902 + B1F SINE Alu 2 113 -36 9 1411 22 35 0 0 chr9 108312272 108312301 -15763871 + AT_rich Low_complexity Low_complexity 1 29 0 9 1411 3106 35 16 3 chr9 108312358 108312735 -15763437 - L1Md_F2 LINE L1 0 6582 6201 9 1411 951 120 14 7 chr9 108312737 108312880 -15763292 - B1_Mur4 SINE Alu -1 149 6 9 1411 24 0 0 0 chr9 108312887 108312911 -15763261 + AT_rich Low_complexity Low_complexity 1 24 0 9 1411 420 211 21 32 chr9 108312918 108313011 -15763161 - ID_B1 SINE B4 0 224 133 9 1411 366 238 54 62 chr9 108313011 108313048 -15763124 - B1F2 SINE Alu 0 149 21 9 1411 201 39 0 0 chr9 108313273 108313299 -15762873 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1411 761 146 68 15 chr9 108313299 108313425 -15762747 - B1_Mur4 SINE Alu -9 141 7 9 1411 413 216 41 73 chr9 108314203 108314339 -15761833 + B3 SINE B2 2 136 -57 9 1411 292 203 29 14 chr9 108314372 108314442 -15761730 + B1_Mur1 SINE Alu 79 149 0 9 1411 496 210 8 40 chr9 108314466 108314590 -15761582 + PB1D9 SINE Alu 1 120 0 9 1411 889 240 28 14 chr9 108314940 108315151 -15761021 + B3 SINE B2 3 216 0 9 1411 893 238 64 10 chr9 108315542 108315746 -15760426 - B3 SINE B2 0 216 2 9 1411 568 226 56 35 chr9 108315857 108315999 -15760173 + B1_Mur1 SINE Alu 5 149 0 9 1411 361 303 112 15 chr9 108316073 108316207 -15759965 - RSINE1 SINE B4 -6 159 13 9 1411 306 0 0 0 chr9 108316253 108316287 -15759885 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1411 315 0 0 0 chr9 108316287 108316321 -15759851 + (GA)n Simple_repeat Simple_repeat 1 35 0 9 1411 268 186 0 0 chr9 108316348 108316391 -15759781 - B3A SINE B2 -151 47 5 9 1411 230 300 14 41 chr9 108316399 108316472 -15759700 - PB1D7 SINE Alu -49 71 1 9 1411 215 73 73 0 chr9 108316482 108316537 -15759635 + (GTTTG)n Simple_repeat Simple_repeat 1 59 0 9 1411 690 138 125 44 chr9 108316538 108316674 -15759498 - B1_Mur3 SINE Alu -1 148 2 9 1411 1047 169 36 0 chr9 108316685 108316851 -15759321 - B3 SINE B2 -5 211 40 9 1411 697 127 55 0 chr9 108316879 108316989 -15759183 + B1_Mus1 SINE Alu 33 148 0 9 1411 795 161 0 0 chr9 108317032 108317173 -15758999 + GA-rich Low_complexity Low_complexity 4 144 0 9 1411 615 14 0 0 chr9 108317173 108317245 -15758927 + (GAGAA)n Simple_repeat Simple_repeat 4 75 0 9 1411 364 277 28 56 chr9 108317273 108317380 -15758792 + PB1D9 SINE Alu 8 111 -9 9 1411 367 325 0 8 chr9 108317552 108317673 -15758499 + PB1D9 SINE Alu 1 120 0 9 1411 248 223 454 14 chr9 108317710 108317851 -15758321 + B4 SINE B4 5 207 -85 9 1411 927 321 7 24 chr9 108317859 108318156 -15758016 + B4A SINE B4 1 292 0 9 1411 1105 277 25 99 chr9 108318156 108318520 -15757652 + MTE2a LTR MaLR 2 338 -41 9 1411 849 65 0 0 chr9 108318515 108318623 -15757549 - B1_Mus2 SINE Alu -1 146 39 9 1411 308 164 120 27 chr9 108318557 108318632 -15757540 - RLTR25B LTR ERVK -519 509 428 9 1411 737 118 0 18 chr9 108318638 108318750 -15757422 - B1_Mur3 SINE Alu 0 149 40 9 1411 256 212 0 57 chr9 108318814 108318884 -15757288 + MTE2a LTR MaLR 314 379 0 9 1411 350 318 7 104 chr9 108318913 108319057 -15757115 - ID_B1 SINE B4 -26 198 69 9 1411 308 257 43 0 chr9 108319084 108319154 -15757018 - ID4_ SINE ID 0 83 11 9 1411 493 339 126 58 chr9 108319206 108319554 -15756618 + MLT2B2 LTR ERVL 144 515 0 9 1411 758 161 21 21 chr9 108320422 108320562 -15755610 + B1F SINE Alu 10 149 0 9 1411 34 0 0 0 chr9 108320578 108320612 -15755560 + AT_rich Low_complexity Low_complexity 1 34 0 9 1411 763 176 22 0 chr9 108320742 108320878 -15755294 - B1_Mur3 SINE Alu -9 140 2 9 1411 31 0 0 0 chr9 108321140 108321171 -15755001 + AT_rich Low_complexity Low_complexity 1 31 0 9 1411 773 171 7 41 chr9 108321190 108321336 -15754836 - B1_Mur3 SINE Alu 0 149 9 9 1411 424 249 56 147 chr9 108321336 108321381 -15754791 - B4 SINE B4 -60 211 53 9 1411 216 0 0 0 chr9 108321399 108321423 -15754749 + (CCTG)n Simple_repeat Simple_repeat 2 25 0 9 1411 1893 153 87 3 chr9 108321459 108321793 -15754379 + ORR1C2 LTR MaLR 23 384 0 9 1411 511 282 0 0 chr9 108321906 108322016 -15754156 + RSINE1 SINE B4 11 120 -45 9 1411 263 250 10 175 chr9 108322073 108322170 -15754002 + ID_B1 SINE B4 143 223 -1 9 1411 889 143 286 0 chr9 108322330 108322498 -15753674 - B3 SINE B2 0 216 1 9 1411 234 242 104 15 chr9 108322535 108322602 -15753570 + BC1_Mm scRNA scRNA 14 86 -66 9 1411 470 273 216 48 chr9 108322684 108322933 -15753239 - B4A SINE B4 -1 291 1 9 1411 393 328 21 28 chr9 108322933 108323074 -15753098 + ID_B1 SINE B4 60 199 -25 9 1411 638 215 25 0 chr9 108322959 108323093 -15753079 + B1_Mur1 SINE Alu 5 149 -1 9 1411 753 182 41 27 chr9 108323288 108323435 -15752737 + B1_Mur2 SINE Alu 1 149 0 9 1411 406 215 83 9 chr9 108323586 108323694 -15752478 + PB1D10 SINE Alu 1 116 -1 9 1411 2949 132 43 43 chr9 108324231 108324365 -15751807 - RLTR19C LTR ERVK 0 506 358 9 1411 1339 98 38 0 chr9 108324365 108324549 -15751623 - B2_Mm2 SINE B2 -3 192 2 9 1411 2949 132 43 43 chr9 108324549 108324920 -15751252 - RLTR19C LTR ERVK -149 357 1 9 1411 591 174 10 0 chr9 108324999 108325096 -15751076 - B1_Mus2 SINE Alu 0 147 50 9 1411 2868 165 28 142 chr9 108325096 108325238 -15750934 + RMER19B LTR ERVK 1 115 -787 9 1411 1443 57 17 0 chr9 108325238 108325414 -15750758 + B2_Mm1a SINE B2 1 179 -14 9 1411 2868 165 28 142 chr9 108325414 108325459 -15750713 + RMER19B LTR ERVK 116 134 -768 9 1411 1132 75 7 0 chr9 108325459 108325605 -15750567 - B1_Mus1 SINE Alu -1 147 1 9 1411 2868 165 28 142 chr9 108325605 108325974 -15750198 + RMER19B LTR ERVK 135 478 -424 9 1411 1217 74 97 0 chr9 108325974 108326150 -15750022 - B2_Mm2 SINE B2 -1 194 2 9 1411 2868 181 26 126 chr9 108326150 108326387 -15749785 + RMER19B LTR ERVK 270 664 -238 9 1411 1183 129 20 20 chr9 108326420 108326617 -15749555 + RMER19B LTR ERVK 656 852 -50 9 1411 1043 74 0 7 chr9 108326618 108326754 -15749418 + B1_Mus1 SINE Alu 13 147 -1 9 1411 331 273 15 0 chr9 108326762 108326828 -15749344 - B1_Mur4 SINE Alu -83 67 1 9 1411 342 0 0 0 chr9 108327114 108327152 -15749020 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1411 573 124 19 76 chr9 108327276 108327366 -15748806 + B1_Mur3 SINE Alu 47 138 -11 9 1411 183 42 0 0 chr9 108327366 108327390 -15748782 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1411 198 0 0 0 chr9 108327395 108327417 -15748755 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1411 227 333 120 13 chr9 108327496 108327654 -15748518 + MLT1A0 LTR MaLR 182 356 -9 9 1411 524 178 31 11 chr9 108327686 108327793 -15748379 + B1_Mur2 SINE Alu 41 148 -1 9 1411 334 290 120 8 chr9 108327967 108328092 -15748080 + B1F SINE Alu 11 149 0 9 1411 220 215 215 0 chr9 108328739 108328804 -15747368 - ID4 SINE ID -1 82 4 9 1411 307 49 24 0 chr9 108328858 108328899 -15747273 - B1_Mus1 SINE Alu -93 55 14 9 1411 282 217 15 77 chr9 108328899 108328923 -15747249 - ID_B1 SINE B4 -89 135 75 9 1411 764 233 34 7 chr9 108328917 108329064 -15747108 - RSINE1 SINE B4 -6 159 9 9 1411 325 255 99 157 chr9 108329100 108329145 -15747027 + B4 SINE B4 44 182 -110 9 1411 844 104 55 75 chr9 108329145 108329236 -15746936 + B1_Mur4 SINE Alu 6 104 -46 9 1411 1622 47 0 0 chr9 108329236 108329428 -15746744 + B2_Mm1t SINE B2 2 193 0 9 1411 325 255 99 157 chr9 108329428 108329482 -15746690 + B4 SINE B4 183 223 -69 9 1411 1268 27 0 20 chr9 108329814 108329964 -15746208 + B1_Mus1 SINE Alu 2 148 0 9 1411 840 154 34 20 chr9 108330088 108330234 -15745938 - B1_Mur3 SINE Alu 0 149 2 9 1411 808 240 39 35 chr9 108330284 108330487 -15745685 - B3 SINE B2 0 216 13 9 1411 269 240 226 39 chr9 108330479 108330672 -15745500 - RMER2 LTR ERV1 -11 556 333 9 1411 333 250 14 0 chr9 108331088 108331160 -15745012 + B1_Mur1 SINE Alu 62 134 -15 9 1411 699 190 0 33 chr9 108331165 108331283 -15744889 + B3 SINE B2 7 120 -96 9 1411 1903 128 3 17 chr9 108331283 108331584 -15744588 + ORR1A2 LTR MaLR 1 297 -30 9 1411 913 118 13 46 chr9 108332560 108332711 -15743461 - B1_Mus1 SINE Alu -2 146 1 1 1411 513 205 41 41 chr9 108332721 108332843 -15743329 - B1_Mur2 SINE Alu 0 149 28 1 1411 308 268 14 0 chr9 108332945 108333016 -15743156 - B1F SINE Alu -4 145 74 1 1411 367 290 40 0 chr9 108333250 108333350 -15742822 + RSINE1 SINE B4 25 128 -37 1 1411 822 148 14 27 chr9 108333425 108333571 -15742601 - B1_Mur4 SINE Alu -1 149 6 1 1411 958 41 0 0 chr9 108333604 108333727 -15742445 + B1_Mus1 SINE Alu 20 142 -6 1 1411 360 0 0 0 chr9 108333729 108333769 -15742403 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1411 400 267 84 26 chr9 108334590 108334744 -15741428 + RSINE1 SINE B4 3 165 0 1 1411 795 129 57 0 chr9 108334790 108334930 -15741242 + B1_Mus1 SINE Alu 1 148 0 1 1411 183 152 0 0 chr9 108334930 108334976 -15741196 + (CAA)n Simple_repeat Simple_repeat 3 48 0 1 1411 421 196 52 27 chr9 108334987 108335136 -15741036 + L1ME1 LINE L1 5808 5966 -198 1 1411 538 218 8 75 chr9 108335151 108335285 -15740887 + ID_B1 SINE B4 94 218 -6 1 1411 461 273 40 47 chr9 108335285 108335435 -15740737 + B1F1 SINE Alu 1 149 0 1 1411 249 315 0 43 chr9 108335449 108335534 -15740638 + ID4_ SINE ID 5 86 -66 1 1411 362 231 143 23 chr9 108335534 108335667 -15740505 + B1F SINE Alu 1 149 0 1 1411 379 292 61 17 chr9 108335675 108335790 -15740382 + PB1D7 SINE Alu 1 120 0 1 1411 180 0 0 0 chr9 108335790 108335810 -15740362 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1411 223 177 32 16 chr9 108335813 108335830 -15740342 + A-rich Low_complexity Low_complexity 2 18 0 1 1411 824 171 0 20 chr9 108335830 108335979 -15740193 + B1_Mur4 SINE Alu 5 150 0 1 1411 223 177 32 16 chr9 108335979 108336024 -15740148 + A-rich Low_complexity Low_complexity 19 65 0 1 1411 231 288 0 0 chr9 108336042 108336101 -15740071 + B1F SINE Alu 67 125 -24 1 1411 226 257 14 41 chr9 108336124 108336197 -15739975 + ID2 SINE ID 7 77 -6 1 1411 494 304 15 0 chr9 108336279 108336414 -15739758 + ID_B1 SINE B4 87 223 -1 1 1411 349 260 42 140 chr9 108336560 108336703 -15739469 - B1_Mur1 SINE Alu -8 141 12 1 1411 1448 63 16 0 chr9 108336708 108336899 -15739273 + B2_Mm2 SINE B2 2 195 0 1 1411 752 285 28 24 chr9 108336953 108337165 -15739007 + MTE2a LTR MaLR 4 216 -163 1 1411 234 91 0 0 chr9 108337188 108337221 -15738951 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1411 618 237 0 0 chr9 108337268 108337386 -15738786 - RSINE1 SINE B4 -36 129 12 1 1411 770 235 97 0 chr9 108337427 108337623 -15738549 - B3 SINE B2 0 216 2 1 1411 388 277 174 7 chr9 108337626 108337775 -15738397 + MTE2a LTR MaLR 205 378 -1 1 1411 742 269 44 10 chr9 108337986 108338189 -15737983 + B3 SINE B2 1 210 -6 1 1411 971 217 9 28 chr9 108339535 108339753 -15736419 - B3 SINE B2 -2 214 1 1 1411 511 62 0 0 chr9 108339866 108339953 -15736219 - L1Md_F2 LINE L1 0 6582 6502 1 1411 380 204 11 0 chr9 108339953 108340038 -15736134 + CT-rich Low_complexity Low_complexity 3 88 0 1 1411 996 45 0 29 chr9 108340039 108340177 -15735995 - B1_Mus1 SINE Alu 0 148 15 1 1411 297 294 0 0 chr9 108341102 108341170 -15735002 + B1F1 SINE Alu 79 146 -3 1 1411 559 239 184 5 chr9 108341170 108341355 -15734817 + ID_B1 SINE B4 3 220 -4 1 1411 280 308 13 0 chr9 108341924 108342002 -15734170 + PB1D10 SINE Alu 1 79 -38 1 1411 462 49 0 0 chr9 108342042 108342103 -15734069 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1411 543 292 57 96 chr9 108343241 108343521 -15732651 - B4A SINE B4 0 292 24 1 1411 267 31 0 0 chr9 108343523 108343555 -15732617 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1 1411 384 316 43 0 chr9 108343556 108343695 -15732477 + B1_Mur2 SINE Alu 3 147 -2 1 1411 2197 243 51 36 chr9 108343708 108344458 -15731714 - L1MD1 LINE L1 -307 5935 5171 1 1411 351 250 134 36 chr9 108344465 108344515 -15731657 - B1F SINE Alu -8 141 80 1 1411 1364 69 32 0 chr9 108344515 108344704 -15731468 - B2_Mm2 SINE B2 0 195 1 1 1411 351 250 134 36 chr9 108344704 108344765 -15731407 - B1F SINE Alu -70 79 19 1 1411 727 215 30 84 chr9 108344817 108345020 -15731152 - B3A SINE B2 0 198 7 1 1411 317 309 36 0 chr9 108345104 108345188 -15730984 - ID_B1 SINE B4 -34 190 104 1 1411 189 0 0 0 chr9 108345257 108345278 -15730894 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1411 348 142 26 86 chr9 108345386 108345440 -15730732 - L1MD LINE L1 -1015 5131 5078 1 1411 1082 80 0 0 chr9 108345440 108345577 -15730595 + B1_Mm SINE Alu 1 137 -10 1 1411 656 0 25 0 chr9 108345577 108345656 -15730516 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 1 1411 348 142 26 86 chr9 108345656 108345716 -15730456 - L1MD LINE L1 -1069 5077 5024 1 1411 278 152 17 0 chr9 108346029 108346088 -15730084 + CT-rich Low_complexity Low_complexity 2 61 0 1 1411 1123 87 23 0 chr9 108346089 108346261 -15729911 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 1 1411 299 356 101 22 chr9 108346434 108346701 -15729471 - L2 LINE L2 -449 2970 2683 1 1411 485 271 59 15 chr9 108346703 108346838 -15729334 + B1F SINE Alu 1 141 -8 1 1411 180 0 0 0 chr9 108346839 108346859 -15729313 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 1411 1135 29 0 0 chr9 108346863 108347000 -15729172 + B1_Mm SINE Alu 1 137 -10 1 1411 207 0 0 0 chr9 108347000 108347023 -15729149 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1411 186 314 198 6 chr9 108347149 108347306 -15728866 - L2 LINE L2 -1005 2414 2228 1 1411 4299 41 4 4 chr9 108348965 108349503 -15726669 + L1Md_F2 LINE L1 6032 6569 -13 1 1411 219 69 0 0 chr9 108349521 108349550 -15726622 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1411 1089 86 0 0 chr9 108349635 108349775 -15726397 + B1_Mus1 SINE Alu 1 140 -8 1 1411 269 26 0 26 chr9 108349775 108349814 -15726358 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1 1411 578 168 7 71 chr9 108349987 108350128 -15726044 - MIRc SINE MIR -58 210 79 1 1411 351 0 0 0 chr9 108351316 108351355 -15724817 + (CACG)n Simple_repeat Simple_repeat 1 39 0 1 1411 360 0 0 0 chr9 108352424 108352464 -15723708 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1411 2180 130 103 16 chr9 108355515 108355944 -15720228 + RMER4A LTR ERVK 1 466 0 1 1411 560 284 117 22 chr9 108356089 108356319 -15719853 - LTR16C LTR ERVL -4 485 234 1 1411 562 169 7 75 chr9 108356838 108356986 -15719186 - B1_Mur3 SINE Alu 0 149 15 1 1411 846 235 78 0 chr9 108356991 108357195 -15718977 - ID_B1 SINE B4 0 224 5 1 1411 697 250 93 26 chr9 108357298 108357491 -15718681 + B3 SINE B2 8 213 -3 1 1411 1326 60 11 16 chr9 108357502 108357688 -15718484 + B2_Mm1t SINE B2 1 185 -8 1 1411 628 304 49 31 chr9 108357695 108357919 -15718253 - MT2A LTR ERVL -64 469 242 1 1411 252 288 0 0 chr9 108357921 108358039 -15718133 + (TGG)n Simple_repeat Simple_repeat 3 120 0 1 1411 390 299 147 15 chr9 108358202 108358399 -15717773 - RMER20B LTR ERVK -223 404 182 1 1411 381 257 185 41 chr9 108358578 108358773 -15717399 - MT2A LTR ERVL -295 238 16 1 1411 663 191 43 22 chr9 108358771 108358910 -15717262 + B1_Mur1 SINE Alu 8 149 0 1 1411 724 198 63 13 chr9 108358913 108359072 -15717100 + B3A SINE B2 1 167 -31 1 1411 236 59 0 0 chr9 108359091 108359125 -15717047 - MTEa LTR MaLR -343 36 3 1 1411 742 87 125 8 chr9 108359440 108359568 -15716604 + B1_Mus2 SINE Alu 5 147 0 1 1411 212 355 11 11 chr9 108359605 108359696 -15716476 + B4A SINE B4 2 92 -200 1 1411 414 289 8 38 chr9 108359800 108359933 -15716239 + RSINE1 SINE B4 2 130 -35 1 1411 1556 180 66 40 chr9 108359943 108360365 -15715807 + RMER10A LTR ERVL 1 433 -9 1 1411 361 219 37 0 chr9 108360419 108360501 -15715671 + B4 SINE B4 82 166 -126 1 1411 242 226 195 102 chr9 108360445 108360563 -15715609 + MT2B LTR ERVL 190 318 -283 1 1411 379 144 21 0 chr9 108360570 108360667 -15715505 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1411 192 77 0 0 chr9 108360725 108360751 -15715421 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 1 1411 1365 48 36 21 chr9 108360751 108360943 -15715229 - B2_Mm2 SINE B2 0 195 1 1 1411 240 35 0 0 chr9 108363512 108363541 -15712631 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 1411 183 206 0 0 chr9 108364409 108364443 -15711729 + L2c LINE L2 3128 3161 -226 1 1411 443 281 30 23 chr9 108364719 108364850 -15711322 + B1F1 SINE Alu 1 132 -17 1 1411 390 319 56 56 chr9 108364861 108365004 -15711168 + ID_B1 SINE B4 82 224 0 1 1411 25 31 0 0 chr9 108366918 108366950 -15709222 + AT_rich Low_complexity Low_complexity 1 32 0 1 1411 219 288 175 0 chr9 108367645 108367725 -15708447 + PB1D10 SINE Alu 11 104 -13 1 1411 734 156 22 29 chr9 108367732 108367871 -15708301 - B1_Mus1 SINE Alu 0 148 11 1 1411 331 231 87 61 chr9 108367890 108368005 -15708167 + B3A SINE B2 13 130 -68 1 1411 429 114 29 0 chr9 108368270 108368340 -15707832 + B3 SINE B2 3 74 -142 1 1411 1473 157 121 111 chr9 108368378 108368809 -15707363 - RMER4A LTR ERVK -3 463 29 1 1411 959 98 59 0 chr9 108368797 108368950 -15707222 - B2_Mm2 SINE B2 -7 188 27 1 1411 1092 78 0 0 chr9 108368971 108369113 -15707059 - B1_Mus1 SINE Alu -6 142 1 1 1411 274 98 0 0 chr9 108369113 108369154 -15707018 - B2_Mm2 SINE B2 -154 41 1 1 1411 254 296 34 0 chr9 108369271 108369359 -15706813 + B4A SINE B4 2 92 -200 1 1411 653 227 7 54 chr9 108369460 108369609 -15706563 + B3A SINE B2 15 156 -42 1 1411 1225 90 23 0 chr9 108369628 108369805 -15706367 + B2_Mm2 SINE B2 1 181 -14 1 1411 362 124 0 5 chr9 108369833 108369898 -15706274 + B2_Mm2 SINE B2 47 109 -107 1 1411 22 0 0 0 chr9 108369908 108369930 -15706242 + AT_rich Low_complexity Low_complexity 1 22 0 1 1411 638 232 0 8 chr9 108369946 108370072 -15706100 + B1_Mur2 SINE Alu 2 126 -23 1 1411 582 218 9 0 chr9 108370128 108370238 -15705934 - B1_Mur1 SINE Alu -5 144 34 1 1411 696 280 21 0 chr9 108370261 108370454 -15705718 + B3 SINE B2 1 197 -19 1 1411 1104 49 21 0 chr9 108370499 108370643 -15705529 - B1_Mus1 SINE Alu -1 147 1 1 1411 1431 55 0 21 chr9 108370654 108370841 -15705331 - B2_Mm1a SINE B2 -9 184 2 1 1411 371 255 53 0 chr9 108371009 108371103 -15705069 + PB1D10 SINE Alu 19 117 0 1 1411 1409 222 82 113 chr9 108372220 108372784 -15703388 + RMER15 LTR ERVL 27 572 -3 1 1411 251 86 0 0 chr9 108372792 108372827 -15703345 - RLTR42 LTR ERVK 0 239 205 1 1411 218 236 67 52 chr9 108372851 108372898 -15703274 - B2_Mm2 SINE B2 -2 193 149 1 1411 1059 58 7 0 chr9 108372898 108373035 -15703137 - B1_Mus2 SINE Alu -7 140 3 1 1411 260 157 34 38 chr9 108373035 108373121 -15703051 - B3 SINE B2 -18 177 58 1 1411 954 84 148 0 chr9 108373177 108373332 -15702840 - B2_Mm1t SINE B2 -14 179 2 1 1411 225 0 0 0 chr9 108373334 108373359 -15702813 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 1 1411 2607 41 9 0 chr9 108373370 108373708 -15702464 + ORR1A1 LTR MaLR 1 341 -5 1 1411 1018 76 0 0 chr9 108373708 108373839 -15702333 - B1_Mus1 SINE Alu -13 135 5 1 1411 1062 89 0 12 chr9 108373845 108374005 -15702167 - B2_Mm2 SINE B2 -2 193 36 1 1411 1448 57 10 0 chr9 108374062 108374255 -15701917 + B2_Mm2 SINE B2 1 195 0 1 1411 1135 63 0 0 chr9 108374271 108374414 -15701758 + B1_Mus1 SINE Alu 1 143 -5 1 1411 1037 188 49 15 chr9 108374450 108374655 -15701517 - RLTR42 LTR ERVK -27 212 1 1 1411 24 0 0 0 chr9 108375098 108375122 -15701050 + AT_rich Low_complexity Low_complexity 1 24 0 1 1411 206 127 0 52 chr9 108375145 108375203 -15700969 + A-rich Low_complexity Low_complexity 1 55 0 1 1411 816 196 0 0 chr9 108375203 108375341 -15700831 + B1_Mus1 SINE Alu 1 138 -10 1 1411 590 26 39 0 chr9 108375341 108375419 -15700753 + (GAAAA)n Simple_repeat Simple_repeat 2 82 0 1 1411 350 258 171 8 chr9 108375419 108375548 -15700624 - B3 SINE B2 -24 192 43 1 1411 939 136 0 0 chr9 108375561 108375708 -15700464 + B2_Mm2 SINE B2 2 148 -47 1 1411 186 43 0 0 chr9 108375728 108375751 -15700421 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1411 900 41 8 0 chr9 108375756 108375877 -15700295 - B1_Mus1 SINE Alu 0 148 27 1 1411 1095 95 0 0 chr9 108375927 108376075 -15700097 + B1_Mus1 SINE Alu 1 148 0 1 1411 1674 172 17 99 chr9 108376083 108376197 -15699975 + RMER6A LTR ERVK 378 489 -267 1 1411 351 0 0 0 chr9 108376197 108376236 -15699936 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1411 293 62 21 0 chr9 108376236 108376283 -15699889 + (CAGAGA)n Simple_repeat Simple_repeat 4 52 0 1 1411 1674 172 17 99 chr9 108376283 108376580 -15699592 + RMER6A LTR ERVK 490 755 -1 1 1411 1151 55 0 7 chr9 108377218 108377366 -15698806 - B1_Mus2 SINE Alu 0 147 1 1 1411 735 150 73 22 chr9 108377448 108377584 -15698588 + B1_Mus2 SINE Alu 5 147 0 1 1411 382 283 71 21 chr9 108377770 108377911 -15698261 - B1F1 SINE Alu -1 148 1 1 1411 416 283 55 8 chr9 108377927 108378055 -15698117 - ID_B1 SINE B4 -3 221 88 1 1411 323 108 0 30 chr9 108378072 108378139 -15698033 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 1 1411 1090 68 0 52 chr9 108378141 108378295 -15697877 - B1_Mm SINE Alu 0 147 2 1 1411 718 173 169 27 chr9 108378394 108378578 -15697594 - B3 SINE B2 -6 210 1 1 1411 1142 48 7 0 chr9 108378790 108378935 -15697237 + B1_Mm SINE Alu 2 147 0 1 1411 243 0 0 0 chr9 108378943 108378970 -15697202 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1411 1337 75 0 21 chr9 108379451 108379641 -15696531 - B2_Mm2 SINE B2 -8 187 2 1 1411 564 172 107 0 chr9 108379645 108379767 -15696405 - RMER19B LTR ERVK -767 135 1 1 1411 225 264 0 0 chr9 108380643 108380696 -15695476 + ID_B1 SINE B4 172 224 0 1 1411 1147 55 0 7 chr9 108380706 108380853 -15695319 + B1_Mm SINE Alu 1 146 -1 1 1411 210 160 0 0 chr9 108380853 108380903 -15695269 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 1 1411 370 127 0 27 chr9 108387012 108387085 -15689087 + CT-rich Low_complexity Low_complexity 5 75 0 1 1411 1141 36 0 7 chr9 108387088 108387229 -15688943 - B1_Mm SINE Alu -6 141 2 1 1411 434 237 0 40 chr9 108391973 108392074 -15684098 - PB1D9 SINE Alu -2 118 22 1 1411 1261 27 0 7 chr9 108394020 108394169 -15682003 - B1_Mus1 SINE Alu 0 148 1 1 1411 315 0 0 0 chr9 108396309 108396344 -15679828 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1412 1552 48 27 0 chr9 108397602 108397790 -15678382 + B2_Mm1a SINE B2 1 193 0 1 1412 719 257 51 46 chr9 108399581 108399777 -15676395 - B3 SINE B2 -19 197 1 1 1412 198 167 0 0 chr9 108399786 108399822 -15676350 + T-rich Low_complexity Low_complexity 1 36 0 1 1412 851 70 9 0 chr9 108399822 108399937 -15676235 - B1_Mus1 SINE Alu 0 148 33 1 1412 33 0 0 0 chr9 108404611 108404644 -15671528 + AT_rich Low_complexity Low_complexity 1 33 0 1 1412 617 261 136 18 chr9 108404783 108405037 -15671135 - MTEa LTR MaLR -10 369 25 1 1412 965 110 20 33 chr9 108405051 108405202 -15670970 - B1_Mur4 SINE Alu 0 150 2 1 1412 550 100 19 13 chr9 108405784 108405903 -15670269 - B1_Mus1 SINE Alu -2 118 1 1 1412 404 200 105 12 chr9 108405835 108405921 -15670251 - B4A SINE B4 -140 152 59 1 1412 875 97 0 203 chr9 108406378 108406466 -15669706 + B1_Mur4 SINE Alu 2 65 -85 1 1412 1262 41 0 0 chr9 108406466 108406613 -15669559 - B1_Mm SINE Alu 0 147 1 1 1412 875 97 0 203 chr9 108406613 108406706 -15669466 + B1_Mur4 SINE Alu 66 146 -4 1 1412 384 319 0 17 chr9 108407140 108407258 -15668914 - PB1D10 SINE Alu 0 117 2 1 1412 1083 84 21 0 chr9 108407758 108407901 -15668271 - B1_Mus2 SINE Alu 0 147 2 1 1412 1649 27 0 0 chr9 108407945 108408132 -15668040 - B2_Mm1a SINE B2 -5 188 2 1 1412 1161 69 7 0 chr9 108408137 108408281 -15667891 - B1_Mm SINE Alu -1 146 2 1 1412 22 35 0 0 chr9 108408291 108408320 -15667852 + AT_rich Low_complexity Low_complexity 1 29 0 1 1412 1062 103 7 0 chr9 108408320 108408465 -15667707 - B1_Mus2 SINE Alu 0 147 2 1 1412 822 126 0 8 chr9 108408476 108408596 -15667576 - PB1D9 SINE Alu 0 120 2 1 1412 341 261 45 0 chr9 108408745 108408833 -15667339 - B1_Mur2 SINE Alu -51 98 7 1 1412 689 266 45 0 chr9 108408841 108409018 -15667154 - B3 SINE B2 -7 209 25 1 1412 230 245 0 36 chr9 108409060 108409115 -15667057 - RSINE1 SINE B4 -62 103 51 1 1412 581 258 17 0 chr9 108409108 108409228 -15666944 - B3 SINE B2 -68 148 27 1 1412 742 192 7 20 chr9 108409248 108409356 -15666816 - B1_Mus2 SINE Alu 0 147 40 1 1412 957 67 73 7 chr9 108409356 108409492 -15666680 - B1_Mm SINE Alu -1 146 2 1 1412 742 192 7 20 chr9 108409492 108409532 -15666640 - B1_Mus2 SINE Alu -108 39 1 1 1412 424 226 96 11 chr9 108409601 108409695 -15666477 - PB1D9 SINE Alu -6 114 13 1 1412 186 220 0 74 chr9 108411699 108411753 -15664419 + L2 LINE L2 547 596 -2823 1 1412 513 204 49 39 chr9 108412191 108412293 -15663879 + B1_Mur1 SINE Alu 44 146 -3 1 1412 761 87 20 160 chr9 108412940 108413090 -15663082 + B1_Mur4 SINE Alu 2 130 -20 1 1412 1391 63 15 59 chr9 108413208 108413411 -15662761 + B2_Mm2 SINE B2 2 195 0 1 1412 456 255 28 0 chr9 108414126 108414232 -15661940 - PB1D9 SINE Alu -7 113 5 1 1412 800 229 77 41 chr9 108414330 108414526 -15661646 + B3 SINE B2 3 205 -11 1 1412 698 291 13 0 chr9 108415778 108415936 -15660236 - RSINE1 SINE B4 -4 161 2 1 1412 1265 74 69 0 chr9 108417727 108417902 -15658270 - B2_Mm2 SINE B2 -8 187 1 1 1412 29 0 0 0 chr9 108419641 108419670 -15656502 + GC_rich Low_complexity Low_complexity 1 29 0 1 1412 25 65 0 0 chr9 108419768 108419814 -15656358 + GC_rich Low_complexity Low_complexity 1 46 0 1 1412 210 118 0 0 chr9 108419825 108419859 -15656313 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1412 183 162 0 0 chr9 108420077 108420114 -15656058 + (CGGG)n Simple_repeat Simple_repeat 2 38 0 1 1412 327 243 0 41 chr9 108422057 108422130 -15654042 - ID4_ SINE ID -1 82 13 1 1412 617 306 56 10 chr9 108422279 108422474 -15653698 - ID_B1 SINE B4 -1 223 20 1 1412 964 211 24 42 chr9 108422626 108422839 -15653333 - B3 SINE B2 -2 214 6 1 1412 552 198 56 19 chr9 108422925 108423033 -15653139 - B1_Mur4 SINE Alu -2 148 37 1 1412 291 283 24 81 chr9 108422952 108423075 -15653097 - MT2B LTR ERVL -335 266 151 1 1412 39 38 0 0 chr9 108423179 108423232 -15652940 + AT_rich Low_complexity Low_complexity 1 53 0 1 1412 1360 104 0 5 chr9 108423356 108423549 -15652623 - B2_Mm2 SINE B2 -2 193 2 1 1412 1601 32 21 0 chr9 108423553 108423740 -15652432 - B2_Mm1t SINE B2 -2 191 1 1 1412 333 0 0 0 chr9 108423764 108423801 -15652371 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1412 349 172 131 61 chr9 108423801 108423900 -15652272 - B1_Mur4 SINE Alu -9 141 36 1 1412 923 48 6 0 chr9 108423822 108423948 -15652224 + B1_Mus1 SINE Alu 12 144 -5 1 1412 1156 82 0 0 chr9 108425137 108425284 -15650888 - B1_Mus1 SINE Alu 0 148 2 1 1412 1291 55 63 32 chr9 108425341 108425530 -15650642 - B2_Mm2 SINE B2 0 195 1 1 1412 269 234 31 0 chr9 108425578 108425642 -15650530 - ID_B1 SINE B4 -5 219 154 1 1412 1011 161 0 0 chr9 108425718 108425867 -15650305 - B1_Mur3 SINE Alu 0 149 1 1 1412 645 205 110 0 chr9 108426253 108426380 -15649792 + B1_Mur1 SINE Alu 2 142 -7 1 1412 407 309 125 0 chr9 108426382 108426550 -15649622 - B3A SINE B2 -9 189 1 1 1412 1181 61 0 20 chr9 108426822 108426972 -15649200 - B1_Mus2 SINE Alu 0 147 1 1 1412 772 204 14 77 chr9 108426974 108427181 -15648991 - B2_Mm2 SINE B2 0 195 2 1 1412 680 167 133 16 chr9 108427197 108427325 -15648847 + B1_Mur4 SINE Alu 2 144 -6 1 1412 540 273 114 23 chr9 108427329 108427344 -15648828 - B3A SINE B2 -4 194 181 1 1412 1634 36 0 15 chr9 108427344 108427539 -15648633 - B2_Mm1a SINE B2 0 193 2 1 1412 540 273 114 23 chr9 108427539 108427699 -15648473 - B3A SINE B2 -18 180 3 1 1412 24 0 0 0 chr9 108428105 108428129 -15648043 + AT_rich Low_complexity Low_complexity 1 24 0 1 1412 386 261 130 0 chr9 108428130 108428222 -15647950 - RSINE1 SINE B4 -9 156 53 1 1412 611 285 45 26 chr9 108428288 108428443 -15647729 - ID_B1 SINE B4 -65 159 2 1 1412 307 289 67 0 chr9 108428447 108428537 -15647635 - PB1D10 SINE Alu 0 117 22 1 1412 967 214 24 14 chr9 108428664 108428877 -15647295 - B3 SINE B2 0 216 2 1 1412 271 241 277 17 chr9 108428930 108429107 -15647065 - MIR SINE MIR -25 237 15 1 1412 328 254 45 2 chr9 108429180 108429270 -15646902 - B1F1 SINE Alu -5 112 19 1 1412 234 247 18 149 chr9 108429220 108429334 -15646838 + YREP_Mm Unknown Unknown 251 349 -1463 1 1412 275 202 14 45 chr9 108429393 108429480 -15646692 + B1F1 SINE Alu 33 149 0 1 1412 551 310 0 7 chr9 108429579 108429725 -15646447 - B1_Mur1 SINE Alu -2 147 3 1 1412 832 191 0 33 chr9 108429887 108430039 -15646133 + B1_Mur4 SINE Alu 3 149 -1 1 1412 412 214 102 0 chr9 108430071 108430169 -15646003 + B1F SINE Alu 13 120 -29 1 1412 275 321 76 55 chr9 108430170 108430315 -15645857 + RSINE1 SINE B4 3 150 -15 1 1412 508 198 27 9 chr9 108430379 108430491 -15645681 + B1_Mur1 SINE Alu 36 149 0 1 1412 258 32 0 0 chr9 108430545 108430576 -15645596 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1412 758 274 0 0 chr9 108430690 108430836 -15645336 + RSINE1 SINE B4 3 148 -17 1 1412 342 152 10 18 chr9 108431500 108431570 -15644602 - B2_Mm2 SINE B2 -73 120 49 1 1412 1067 112 74 34 chr9 108431612 108431787 -15644385 - B2_Mm2 SINE B2 -12 183 2 1 1412 304 276 32 79 chr9 108431790 108431916 -15644256 - PB1D7 SINE Alu 0 120 1 1 1412 424 349 26 13 chr9 108432004 108432158 -15644014 + RSINE1 SINE B4 4 159 -6 1 1412 588 295 113 15 chr9 108432733 108432998 -15643174 - B4A SINE B4 -1 291 1 1 1412 1214 47 0 7 chr9 108433048 108433197 -15642975 + B1_Mus1 SINE Alu 1 148 0 1 1412 272 308 23 33 chr9 108433453 108433545 -15642627 - PB1 SINE Alu -22 105 13 1 1412 929 147 7 7 chr9 108433782 108433926 -15642246 - B1_Mus1 SINE Alu 0 148 5 1 1412 327 248 225 18 chr9 108433977 108434088 -15642084 - RSINE1 SINE B4 -28 137 4 1 1412 760 187 65 0 chr9 108434156 108434295 -15641877 + B1_Mur2 SINE Alu 2 149 0 1 1412 1207 56 0 0 chr9 108434649 108434792 -15641380 - B1_Mus1 SINE Alu -5 143 1 1 1412 580 236 126 0 chr9 108434894 108435021 -15641151 - B1_Mur4 SINE Alu -7 143 1 1 1412 260 318 70 12 chr9 108435076 108435162 -15641010 - RSINE1 SINE B4 -71 94 4 1 1412 981 217 58 19 chr9 108435182 108435389 -15640783 - B3 SINE B2 0 216 2 1 1412 24 0 0 0 chr9 108435393 108435417 -15640755 + AT_rich Low_complexity Low_complexity 1 24 0 1 1412 1210 34 0 20 chr9 108435525 108435674 -15640498 - B1_Mus1 SINE Alu -1 147 2 1 1412 245 171 28 28 chr9 108436865 108436937 -15639235 + (CAG)n Simple_repeat Simple_repeat 1 72 0 1 1412 1972 118 73 41 chr9 108437169 108437223 -15638949 - ORR1A2 LTR MaLR 0 327 286 1 1412 1589 47 5 0 chr9 108437223 108437414 -15638758 - B2_Mm1a SINE B2 -1 192 1 1 1412 1972 118 73 41 chr9 108437414 108437676 -15638496 - ORR1A2 LTR MaLR -42 285 1 1 1412 260 67 49 16 chr9 108437833 108437894 -15638278 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 1 1412 1074 99 0 0 chr9 108437913 108438054 -15638118 - B1_Mus1 SINE Alu -6 142 2 1 1412 668 221 43 0 chr9 108438167 108438307 -15637865 + B1_Mur1 SINE Alu 3 148 -1 1 1412 1057 97 105 33 chr9 108438853 108439034 -15637138 + B2_Mm2 SINE B2 2 195 0 1 1412 251 0 59 0 chr9 108439034 108439068 -15637104 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 1 1412 534 244 43 22 chr9 108439096 108439234 -15636938 + ID_B1 SINE B4 84 224 0 1 1412 533 250 157 19 chr9 108439236 108439395 -15636777 + B3A SINE B2 2 182 -16 1 1412 670 229 0 30 chr9 108439404 108439539 -15636633 + B3 SINE B2 1 131 -85 1 1412 363 160 13 51 chr9 108439589 108439615 -15636557 - B1_Mus2 SINE Alu 0 147 126 1 1412 243 0 0 0 chr9 108439615 108439642 -15636530 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1412 363 160 13 51 chr9 108439642 108439694 -15636478 - B1_Mus2 SINE Alu -22 125 73 1 1412 806 60 248 0 chr9 108439723 108439840 -15636332 + B1_Mus1 SINE Alu 1 146 -2 1 1412 207 0 0 0 chr9 108439840 108439863 -15636309 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1412 788 76 246 0 chr9 108440615 108440733 -15635439 + B1_Mus1 SINE Alu 2 148 0 1 1412 208 147 0 0 chr9 108440733 108440767 -15635405 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1412 567 181 132 9 chr9 108440906 108441012 -15635160 - B1_Mus1 SINE Alu -10 138 20 1 1412 478 335 35 14 chr9 108441050 108441256 -15634916 - B4A SINE B4 -8 284 67 1 1412 403 250 10 52 chr9 108441289 108441386 -15634786 - B3 SINE B2 -5 211 119 1 1412 338 286 0 0 chr9 108441376 108441446 -15634726 + B4A SINE B4 83 152 -140 1 1412 213 39 0 0 chr9 108441538 108441564 -15634608 + (TCC)n Simple_repeat Simple_repeat 3 28 0 1 1412 715 165 16 16 chr9 108441615 108441738 -15634434 + B1_Mus1 SINE Alu 6 128 -20 1 1412 249 33 0 0 chr9 108441745 108441775 -15634397 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1412 417 244 0 37 chr9 108441824 108441905 -15634267 + PB1D10 SINE Alu 7 84 -33 1 1412 1604 21 0 68 chr9 108441950 108442157 -15634015 + B2_Mm1a SINE B2 1 193 0 1 1412 1120 97 14 0 chr9 108442176 108442321 -15633851 + B1_Mus1 SINE Alu 2 148 0 1 1412 1155 130 16 28 chr9 108442326 108442508 -15633664 - B2_Mm2 SINE B2 -14 181 2 1 1412 213 348 72 94 chr9 108442718 108442899 -15633273 - ID_B1 SINE B4 -34 190 14 1 1412 509 244 0 56 chr9 108443077 108443092 -15633080 - PB1D9 SINE Alu -1 119 106 1 1412 279 0 0 0 chr9 108443092 108443123 -15633049 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 1412 509 244 0 56 chr9 108443123 108443233 -15632939 - PB1D9 SINE Alu -15 105 1 1 1412 307 288 16 63 chr9 108443233 108443272 -15632900 - B4A SINE B4 -210 82 50 1 1412 594 179 171 0 chr9 108443391 108443508 -15632664 - B1_Mur4 SINE Alu -13 137 1 1 1412 520 285 14 27 chr9 108443509 108443657 -15632515 - B1F1 SINE Alu -1 148 3 1 1412 358 234 29 87 chr9 108443688 108443791 -15632381 + RSINE1 SINE B4 3 99 -66 1 1412 229 240 39 26 chr9 108445009 108445086 -15631086 + PB1D9 SINE Alu 17 94 -26 1 1412 357 228 258 50 chr9 108445095 108445112 -15631060 - B1_Mur4 SINE Alu -1 149 138 1 1412 180 0 0 0 chr9 108445112 108445132 -15631040 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1412 357 228 258 50 chr9 108445132 108445234 -15630938 - B1_Mur4 SINE Alu -13 137 5 1 1412 465 19 0 0 chr9 108445239 108445293 -15630879 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1 1412 322 280 0 47 chr9 108445385 108445471 -15630701 + RSINE1 SINE B4 2 83 -209 1 1412 1341 56 56 0 chr9 108445528 108445708 -15630464 - B2_Mm1t SINE B2 -2 191 2 1 1412 1188 111 17 0 chr9 108445939 108446119 -15630053 + B2_Mm1t SINE B2 2 184 -9 1 1412 336 224 0 0 chr9 108446334 108446401 -15629771 + B2_Mm2 SINE B2 1 67 -128 1 1412 238 360 0 55 chr9 108446398 108446489 -15629683 + B3 SINE B2 104 189 -27 1 1412 1178 54 0 0 chr9 108446579 108446726 -15629446 + B1_Mus2 SINE Alu 1 147 0 1 1412 287 261 9 4 chr9 108446726 108446828 -15629344 + B1F1 SINE Alu 47 149 0 1 1412 388 260 60 0 chr9 108446940 108447040 -15629132 - B3A SINE B2 -92 106 1 1 1412 585 194 189 27 chr9 108447338 108447523 -15628649 - B3 SINE B2 0 216 2 1 1412 330 260 135 0 chr9 108447558 108447662 -15628510 + PB1D9 SINE Alu 2 119 -1 1 1412 305 311 15 109 chr9 108447842 108447979 -15628193 - B1_Mur1 SINE Alu -25 124 1 1 1412 217 378 0 86 chr9 108447857 108447996 -15628176 - B4 SINE B4 -94 198 72 1 1412 261 318 23 12 chr9 108448154 108448240 -15627932 + PB1 SINE Alu 39 125 -2 1 1412 579 180 70 8 chr9 108448303 108448432 -15627740 + B3 SINE B2 3 139 -77 1 1412 348 261 59 25 chr9 108448623 108448741 -15627431 - L1MC1 LINE L1 -298 6035 5914 1 1412 299 182 36 0 chr9 108448781 108448836 -15627336 - PB1D9 SINE Alu -29 91 35 1 1412 598 311 86 10 chr9 108448938 108449136 -15627036 - ID_B1 SINE B4 -3 221 9 1 1412 781 237 20 25 chr9 108449153 108449356 -15626816 - B3 SINE B2 -14 202 1 1 1412 427 259 28 43 chr9 108449422 108449563 -15626609 - B1_Mur2 SINE Alu 0 149 11 1 1412 646 251 59 16 chr9 108449624 108449810 -15626362 - B3A SINE B2 -4 194 1 1 1412 1190 117 27 0 chr9 108449826 108450014 -15626158 - B2_Mm2 SINE B2 -1 194 2 1 1412 566 190 71 28 chr9 108450190 108450331 -15625841 - B1_Mur4 SINE Alu 0 150 4 1 1412 426 296 6 17 chr9 108450353 108450532 -15625640 + L1MC LINE L1 4791 4967 -1179 1 1412 1550 42 0 0 chr9 108450547 108450738 -15625434 - B2_Mm1a SINE B2 -1 192 2 1 1412 180 0 0 0 chr9 108450738 108450758 -15625414 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1412 439 224 74 41 chr9 108450888 108451009 -15625163 + B4A SINE B4 4 128 -164 1 1412 270 356 35 9 chr9 108451023 108451139 -15625033 + B4A SINE B4 168 286 -6 1 1412 1018 99 58 126 chr9 108451195 108451360 -15624812 - B2_Mm2 SINE B2 -2 193 32 1 1412 1091 88 0 0 chr9 108451360 108451507 -15624665 - B1_Mus2 SINE Alu 0 147 1 1 1412 1018 99 58 126 chr9 108451507 108451548 -15624624 - B2_Mm2 SINE B2 -164 31 1 1 1412 233 194 73 15 chr9 108451548 108451616 -15624556 + L1MC LINE L1 5079 5150 -996 1 1412 845 278 14 5 chr9 108451627 108451837 -15624335 + B3 SINE B2 1 212 -4 1 1412 236 259 0 69 chr9 108452191 108452249 -15623923 + B3A SINE B2 5 58 -140 1 1412 652 319 38 10 chr9 108452361 108452570 -15623602 + B4 SINE B4 3 217 -75 1 1412 2953 23 0 0 chr9 108452581 108452927 -15623245 - ORR1A0 LTR MaLR 0 346 1 1 1412 246 29 0 0 chr9 108452929 108452964 -15623208 - ORR1A0 LTR MaLR -311 35 1 1 1412 245 218 0 35 chr9 108453015 108453072 -15623100 + (CATG)n Simple_repeat Simple_repeat 2 56 0 1 1412 398 167 31 72 chr9 108453111 108453208 -15622964 + B1_Mur2 SINE Alu 47 139 -10 1 1412 663 172 102 0 chr9 108453382 108453510 -15622662 - B1_Mur4 SINE Alu -9 141 1 1 1412 21 57 0 0 chr9 108453606 108453641 -15622531 + AT_rich Low_complexity Low_complexity 1 35 0 1 1412 26 0 0 0 chr9 108453803 108453829 -15622343 + AT_rich Low_complexity Low_complexity 1 26 0 1 1412 455 188 0 0 chr9 108453835 108453920 -15622252 + RSINE1 SINE B4 15 99 -66 1 1412 1054 158 43 0 chr9 108453936 108454120 -15622052 - B2_Mm2 SINE B2 0 195 4 1 1412 1735 97 130 14 chr9 108454120 108454412 -15621760 - ORR1A3 LTR MaLR 0 326 1 1 1412 8919 139 120 12 chr9 108454412 108456185 -15619987 - ORR1A3-int LTR MaLR 0 1963 1 1 1412 1147 83 6 0 chr9 108456185 108456353 -15619819 - ORR1A3 LTR MaLR 0 326 158 1 1412 318 265 95 0 chr9 108456528 108456633 -15619539 + B1F SINE Alu 1 116 -33 1 1412 721 121 17 17 chr9 108456642 108456760 -15619412 + PB1D9 SINE Alu 1 118 -2 1 1412 699 239 21 37 chr9 108457301 108457492 -15618680 + B3 SINE B2 24 211 -5 1 1412 777 156 70 17 chr9 108457699 108457877 -15618295 - B2_Mm2 SINE B2 0 198 6 1 1412 743 199 193 0 chr9 108457956 108458137 -15618035 - B3 SINE B2 0 216 1 1 1412 417 86 0 0 chr9 108459402 108459460 -15616712 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1412 1121 55 0 27 chr9 108459550 108459700 -15616472 + B1_Mus2 SINE Alu 2 147 0 1 1412 539 96 0 12 chr9 108459701 108459785 -15616387 + (GAAAA)n Simple_repeat Simple_repeat 2 84 0 1 1412 374 236 88 73 chr9 108459799 108459907 -15616265 + PB1D9 SINE Alu 9 120 -27 1 1412 1035 76 14 0 chr9 108459907 108460051 -15616121 - B1_Mus2 SINE Alu 0 147 2 1 1412 326 236 88 73 chr9 108460051 108460079 -15616093 + B1_Mm SINE Alu 121 147 0 1 1412 234 328 27 107 chr9 108460193 108460343 -15615829 - ID_B1 SINE B4 -3 221 84 1 1412 442 250 24 55 chr9 108460217 108460344 -15615828 - B1_Mm SINE Alu -23 124 2 1 1412 553 230 36 7 chr9 108460403 108460543 -15615629 - B1_Mur3 SINE Alu -5 144 1 1 1412 466 195 91 45 chr9 108460606 108460805 -15615367 - RMER17C LTR ERVK -133 277 70 1 1412 1157 61 0 0 chr9 108463463 108463611 -15612561 - B1_Mus1 SINE Alu 0 148 1 1 1412 23 0 0 0 chr9 108465243 108465266 -15610906 + AT_rich Low_complexity Low_complexity 1 23 0 1 1412 1140 74 0 0 chr9 108465266 108465414 -15610758 - B1_Mus1 SINE Alu 0 148 1 1 1412 231 280 165 18 chr9 108471537 108471646 -15604526 + Charlie21a DNA MER1_type 574 698 -515 1 1412 879 104 22 0 chr9 108471686 108471821 -15604351 + B1_Mus2 SINE Alu 9 146 -1 1 1412 375 287 18 18 chr9 108479103 108479213 -15596959 - PB1D10 SINE Alu -7 110 1 1 1412 390 74 0 0 chr9 108479463 108479517 -15596655 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1412 225 94 0 0 chr9 108480043 108480075 -15596097 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1412 219 238 24 0 chr9 108483409 108483451 -15592721 + ID4 SINE ID 31 73 -10 1 1412 628 263 113 5 chr9 108483482 108483677 -15592495 - ID_B1 SINE B4 0 224 9 1 1412 964 122 7 0 chr9 108483867 108484015 -15592157 - B1_Mur3 SINE Alu 0 149 1 1 1412 741 152 15 29 chr9 108486317 108486453 -15589719 - B1_Mur1 SINE Alu -1 148 15 1 1412 994 65 65 0 chr9 108486487 108486625 -15589547 - B1_Mus2 SINE Alu 0 147 1 1 1412 29 28 0 0 chr9 108486804 108486840 -15589332 + AT_rich Low_complexity Low_complexity 1 36 0 1 1412 1353 51 11 0 chr9 108486840 108487016 -15589156 - B2_Mm1t SINE B2 -14 179 2 1 1412 493 163 10 39 chr9 108487016 108487118 -15589054 - BC1_Mm scRNA scRNA -53 99 1 1 1412 575 293 0 14 chr9 108487139 108487281 -15588891 - ID_B1 SINE B4 -4 220 81 1 1412 891 188 0 0 chr9 108487296 108487472 -15588700 + (CATA)n Simple_repeat Simple_repeat 2 177 0 1 1412 216 143 0 0 chr9 108487475 108487510 -15588662 - B1_Mur1 SINE Alu -42 107 73 1 1412 642 261 65 19 chr9 108487642 108487755 -15588417 - URR1B DNA MER1_type 0 225 112 1 1412 1119 55 7 0 chr9 108487755 108487900 -15588272 - B1_Mus2 SINE Alu -1 146 1 1 1412 642 261 65 19 chr9 108487900 108488001 -15588171 - URR1B DNA MER1_type -114 111 1 1 1412 797 99 8 0 chr9 108488245 108488366 -15587806 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 1 1412 835 187 66 0 chr9 108489012 108489178 -15586994 + ID_B1 SINE B4 48 224 0 1 1412 369 262 157 26 chr9 108491006 108491159 -15585013 - B4A SINE B4 -119 173 1 1 1412 269 281 31 10 chr9 108491320 108491417 -15584755 + ID_B1 SINE B4 81 179 -45 1 1412 647 212 107 36 chr9 108491973 108492169 -15584003 - B3 SINE B2 -6 210 1 1 1412 223 250 17 0 chr9 108492240 108492300 -15583872 + B4 SINE B4 1 61 -231 1 1412 235 200 319 11 chr9 108492303 108492394 -15583778 - PB1D9 SINE Alu -1 119 1 1 1412 377 305 0 78 chr9 108492394 108492524 -15583648 + B4A SINE B4 104 221 -71 1 1412 1131 61 7 0 chr9 108492534 108492681 -15583491 + B1_Mus1 SINE Alu 1 148 0 1 1412 333 303 105 8 chr9 108492713 108492846 -15583326 + RSINE1 SINE B4 5 150 -15 1 1412 24 0 0 0 chr9 108492869 108492893 -15583279 + AT_rich Low_complexity Low_complexity 1 24 0 1 1412 368 287 137 15 chr9 108492962 108493093 -15583079 + B1F SINE Alu 2 148 -1 1 1412 215 171 49 0 chr9 108493202 108493243 -15582929 + PB1D9 SINE Alu 71 113 -7 1 1412 839 144 96 28 chr9 108493332 108493510 -15582662 - B2_Mm2 SINE B2 -1 194 5 1 1412 358 214 162 10 chr9 108493531 108493630 -15582542 + B1_Mur2 SINE Alu 34 147 -2 1 1412 386 222 30 20 chr9 108493649 108493750 -15582422 + B1F SINE Alu 18 119 -30 1 1412 1397 60 16 5 chr9 108494156 108494341 -15581831 - B2_Mm2 SINE B2 -7 188 2 1 1412 1098 55 7 0 chr9 108494402 108494548 -15581624 - B1_Mus2 SINE Alu 0 147 1 1 1412 1234 169 115 28 chr9 108494559 108494882 -15581290 + ORR1D1 LTR MaLR 24 374 0 1 1412 316 169 17 0 chr9 108494882 108494940 -15581232 - ID_B1 SINE B4 -59 165 107 1 1412 273 119 0 0 chr9 108495019 108495061 -15581111 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1412 963 51 71 28 chr9 108495061 108495202 -15580970 - B1_Mm SINE Alu 0 147 1 1 1412 640 265 62 51 chr9 108495346 108495541 -15580631 - ID_B1 SINE B4 -20 204 8 1 1412 1076 98 0 0 chr9 108495592 108495735 -15580437 - B1_Mus1 SINE Alu -5 143 1 1 1412 891 124 88 28 chr9 108495764 108495946 -15580226 - B2_Mm2 SINE B2 0 195 3 1 1412 24 32 0 0 chr9 108495963 108495994 -15580178 + AT_rich Low_complexity Low_complexity 1 31 0 1 1412 388 244 79 113 chr9 108495994 108496197 -15579975 - B3 SINE B2 -19 197 2 1 1412 234 0 0 0 chr9 108496213 108496239 -15579933 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1412 421 210 14 139 chr9 108496239 108496373 -15579799 - B1_Mus1 SINE Alu -9 139 24 1 1412 229 260 13 64 chr9 108496440 108496518 -15579654 - RLTR25A LTR ERVK -507 596 523 1 1412 369 211 89 0 chr9 108496450 108496540 -15579632 - PB1D10 SINE Alu -27 122 25 1 1412 506 229 141 11 chr9 108497258 108497435 -15578737 - B3 SINE B2 -3 213 14 1 1412 221 150 0 0 chr9 108497489 108497529 -15578643 + B3A SINE B2 1 40 -158 1 1412 273 192 0 0 chr9 108497603 108497655 -15578517 - RSINE1 SINE B4 -41 124 73 1 1412 4477 10 0 0 chr9 108497708 108498224 -15577948 - L1Md_A LINE L1 0 6582 6067 1 1412 903 151 0 7 chr9 108498350 108498497 -15577675 - B1_Mus1 SINE Alu -2 146 1 1 1412 26 0 0 0 chr9 108500211 108500237 -15575935 + GC_rich Low_complexity Low_complexity 1 26 0 1 1412 390 250 131 16 chr9 108500395 108500578 -15575594 - B3 SINE B2 -9 207 4 2 1412 185 0 40 0 chr9 108500612 108500637 -15575535 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1412 1174 68 0 7 chr9 108500644 108500792 -15575380 - B1_Mus2 SINE Alu 0 147 1 4 1412 202 137 13 52 chr9 108500819 108500896 -15575276 + A-rich Low_complexity Low_complexity 6 79 0 5 1412 376 232 103 21 chr9 108500902 108500999 -15575173 - ID_B1 SINE B4 -13 211 107 6 1412 990 87 0 0 chr9 108500999 108501137 -15575035 + B2_Mm2 SINE B2 2 139 -56 7 1412 253 47 0 44 chr9 108501500 108501545 -15574627 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 8 1412 1046 43 35 0 chr9 108501545 108501686 -15574486 - B2_Mm1a SINE B2 -46 147 2 9 1412 499 344 91 4 chr9 108502055 108502309 -15573863 - B4A SINE B4 -9 283 8 1 1412 288 218 0 52 chr9 108502368 108502426 -15573746 + ID_B1 SINE B4 81 135 -89 1 1412 319 222 0 0 chr9 108502495 108502558 -15573614 + B1F2 SINE Alu 1 63 -86 1 1412 361 77 312 25 chr9 108502651 108502731 -15573441 - PB1D9 SINE Alu -1 119 17 1 1412 288 240 75 65 chr9 108502742 108502849 -15573323 - PB1D10 SINE Alu -9 108 1 1 1412 965 80 72 7 chr9 108502923 108503061 -15573111 + B1_Mus2 SINE Alu 1 147 0 1 1412 211 204 0 0 chr9 108503063 108503117 -15573055 + A-rich Low_complexity Low_complexity 5 58 0 1 1412 676 227 0 26 chr9 108503154 108503308 -15572864 - B3A SINE B2 -48 150 1 1 1412 447 54 0 0 chr9 108503398 108503454 -15572718 + MERVL-int LTR ERVL 5316 5371 -114 1 1412 347 111 26 53 chr9 108503454 108503530 -15572642 + ORR1A3-int LTR MaLR 567 640 -1323 1 1412 321 0 0 0 chr9 108503530 108503568 -15572604 + MERVL-int LTR ERVL 5448 5485 0 1 1412 2891 17 17 0 chr9 108503568 108503930 -15572242 + MT2_Mm LTR ERVL 1 368 -125 1 1412 217 293 122 0 chr9 108503940 108504022 -15572150 - RSINE1 SINE B4 -68 97 6 2 1412 316 157 127 14 chr9 108504142 108504213 -15571959 + B3 SINE B2 1 79 -137 2 1412 1687 130 120 0 chr9 108504475 108504767 -15571405 + ORR1A2 LTR MaLR 1 327 0 2 1412 363 135 24 126 chr9 108505030 108505046 -15571126 + MT2B LTR ERVL 151 153 -448 2 1412 820 88 8 0 chr9 108505046 108505171 -15571001 + B1_Mus1 SINE Alu 2 127 -21 2 1412 835 204 72 58 chr9 108508136 108508344 -15567828 + ID_B1 SINE B4 11 221 -3 2 1412 296 197 99 0 chr9 108508424 108508495 -15567677 + PB1D10 SINE Alu 9 86 -31 2 1412 1111 101 0 0 chr9 108508535 108508698 -15567474 + B2_Mm2 SINE B2 1 164 -29 2 1412 837 0 0 0 chr9 108508698 108508791 -15567381 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 2 1412 1057 131 6 17 chr9 108508791 108508805 -15567367 + B2_Mm1a SINE B2 165 176 -17 2 1412 234 272 9 80 chr9 108509082 108509194 -15566978 - ID_B1 SINE B4 -98 126 23 2 1412 280 307 13 0 chr9 108509135 108509210 -15566962 - ID4 SINE ID -2 81 6 3 1412 1167 68 0 20 chr9 108510515 108510666 -15565506 - B1_Mus1 SINE Alu 0 148 1 3 1412 486 273 117 130 chr9 108511264 108511487 -15564685 - B4 SINE B4 0 292 73 3 1412 659 227 149 16 chr9 108512945 108513133 -15563039 + B3 SINE B2 1 213 -3 3 1412 890 111 82 0 chr9 108513169 108513304 -15562868 - B1_Mus1 SINE Alu 0 148 3 3 1412 228 151 0 159 chr9 108513329 108513340 -15562832 - ID_B1 SINE B4 0 224 214 3 1412 1316 20 0 0 chr9 108513340 108513487 -15562685 - B1_Mm SINE Alu 0 147 1 3 1412 1239 106 38 27 chr9 108513492 108513677 -15562495 - B2_Mm2 SINE B2 -6 189 3 3 1412 228 151 0 159 chr9 108513677 108513722 -15562450 - ID_B1 SINE B4 -11 213 172 3 1412 449 147 0 51 chr9 108513722 108513756 -15562416 - PB1D9 SINE Alu -11 109 35 3 1412 237 212 271 0 chr9 108514494 108514579 -15561593 - ID_B1 SINE B4 -114 110 3 3 1412 259 310 7 100 chr9 108514716 108514856 -15561316 + MT2B LTR ERVL 131 257 -344 3 1412 739 181 0 0 chr9 108514764 108514891 -15561281 + B1_Mur4 SINE Alu 14 140 -10 4 1412 238 259 0 49 chr9 108515140 108515201 -15560971 + MIRb SINE MIR 43 100 -168 4 1412 422 312 0 54 chr9 108515372 108515521 -15560651 + B1_Mur1 SINE Alu 7 147 -2 4 1412 604 293 24 0 chr9 108515542 108515709 -15560463 + ID_B1 SINE B4 54 224 0 4 1412 264 314 8 62 chr9 108516401 108516530 -15559642 + PB1 SINE Alu 4 125 -2 4 1412 560 164 143 38 chr9 108517605 108517738 -15558434 + B1_Mus2 SINE Alu 1 147 0 4 1412 522 252 114 0 chr9 108517861 108517984 -15558188 + B1_Mur1 SINE Alu 2 138 -11 4 1412 180 0 0 0 chr9 108517984 108518004 -15558168 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1412 573 250 19 83 chr9 108518086 108518243 -15557929 - ID_B1 SINE B4 0 224 78 4 1412 592 204 0 9 chr9 108518423 108518537 -15557635 - B1_Mus2 SINE Alu -21 126 14 4 1412 1025 209 14 36 chr9 108518733 108518952 -15557220 + B3 SINE B2 3 216 0 5 1412 761 227 32 0 chr9 108519311 108519465 -15556707 + B3 SINE B2 38 196 -20 5 1412 374 168 40 13 chr9 108519463 108519559 -15556613 + B1_Mm SINE Alu 19 120 0 5 1412 315 263 11 50 chr9 108519863 108519964 -15556208 - PB1D9 SINE Alu -12 137 43 5 1412 1240 98 32 5 chr9 108519964 108520149 -15556023 - B2_Mm1t SINE B2 -2 191 2 5 1412 237 303 32 143 chr9 108520149 108520201 -15555971 - B1F2 SINE Alu -96 53 1 5 1412 841 232 15 34 chr9 108520212 108520417 -15555755 - B3 SINE B2 -4 212 12 5 1412 1014 114 112 18 chr9 108520565 108520735 -15555437 - B2_Mm2 SINE B2 -9 186 1 5 1412 277 304 160 0 chr9 108520781 108520906 -15555266 + B4A SINE B4 2 146 -146 5 1412 282 270 0 55 chr9 108520854 108520937 -15555235 + B1F2 SINE Alu 10 88 -61 5 1412 216 0 0 0 chr9 108520944 108520968 -15555204 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1412 1058 59 74 0 chr9 108520968 108521103 -15555069 - B1_Mus2 SINE Alu 0 147 3 6 1412 329 347 16 8 chr9 108521113 108521237 -15554935 + MER20 DNA MER1_type 61 185 -34 6 1412 307 333 43 7 chr9 108521237 108521376 -15554796 + B1_Mur3 SINE Alu 1 144 -5 6 1412 482 163 11 11 chr9 108521848 108521933 -15554239 + MTC LTR MaLR 13 97 -324 6 1412 562 260 8 8 chr9 108521933 108522057 -15554115 + B1_Mur2 SINE Alu 2 125 -24 6 1412 299 341 21 35 chr9 108521934 108522077 -15554095 + ID_B1 SINE B4 84 224 0 6 1412 418 59 206 0 chr9 108522095 108522163 -15554009 + B2_Mm2 SINE B2 35 116 -79 6 1412 459 158 128 40 chr9 108522197 108522322 -15553850 + ORR1B1 LTR MaLR 79 214 -207 6 1412 321 262 231 9 chr9 108522888 108522996 -15553176 + B1_Mur1 SINE Alu 2 133 -16 6 1412 302 175 250 0 chr9 108523020 108523100 -15553072 + PB1D9 SINE Alu 19 118 -2 6 1412 612 201 44 15 chr9 108523113 108523249 -15552923 - B1_Mus2 SINE Alu -1 146 7 7 1412 779 20 10 0 chr9 108523255 108523357 -15552815 + B1_Mus2 SINE Alu 45 147 0 7 1412 700 169 52 75 chr9 108523373 108523546 -15552626 + ORR1B1 LTR MaLR 218 386 -8 6 1412 681 236 39 44 chr9 108523654 108523858 -15552314 + B3 SINE B2 1 203 -13 7 1412 425 256 64 21 chr9 108523977 108524117 -15552055 + B1_Mur2 SINE Alu 2 147 -2 7 1412 239 271 14 0 chr9 108524162 108524232 -15551940 - ID_B1 SINE B4 -41 183 113 7 1412 717 163 0 0 chr9 108524437 108524572 -15551600 + CT-rich Low_complexity Low_complexity 3 137 0 7 1412 594 198 86 0 chr9 108524633 108524749 -15551423 - B1_Mur3 SINE Alu -23 126 1 7 1412 599 248 47 51 chr9 108524749 108524983 -15551189 + L1M4 LINE L1 5577 5809 -375 7 1412 471 253 159 42 chr9 108524986 108525117 -15551055 + L1ME1 LINE L1 5733 5871 -308 7 1412 1234 104 27 11 chr9 108525117 108525302 -15550870 + B2_Mm2 SINE B2 1 188 -7 7 1412 471 253 159 42 chr9 108525302 108525434 -15550738 + L1ME1 LINE L1 5872 6027 -152 7 1412 288 0 0 0 chr9 108525477 108525509 -15550663 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1412 222 333 6 106 chr9 108525611 108525630 -15550542 + ID_B1 SINE B4 78 221 -2 8 1412 441 264 0 85 chr9 108525630 108525771 -15550401 + B1F1 SINE Alu 16 144 -5 8 1412 489 189 147 16 chr9 108525778 108525907 -15550265 + ID_B1 SINE B4 78 223 -1 8 1412 268 289 23 57 chr9 108525977 108526065 -15550107 + RSINE1 SINE B4 56 140 -25 8 1412 462 179 257 9 chr9 108526288 108526401 -15549771 - B1_Mus1 SINE Alu -7 141 1 8 1412 1054 63 70 0 chr9 108526955 108527097 -15549075 + L1Md_F2 LINE L1 6415 6566 -16 8 1412 371 193 81 2 chr9 108527173 108527277 -15548895 - PB1D10 SINE Alu 0 120 5 8 1412 1083 94 0 29 chr9 108527418 108527593 -15548579 - B2_Mm2 SINE B2 -24 171 2 8 1413 468 267 0 0 chr9 108527638 108527739 -15548433 + B1_Mur3 SINE Alu 3 103 -46 8 1413 408 282 6 134 chr9 108527765 108527839 -15548333 - RSINE1 SINE B4 -17 148 82 9 1413 578 176 5 217 chr9 108527839 108527944 -15548228 - B1_Mur2 SINE Alu 0 149 73 9 1413 1219 21 7 7 chr9 108527944 108528090 -15548082 - B1_Mus2 SINE Alu 0 147 2 9 1413 578 176 5 217 chr9 108528090 108528173 -15547999 - B1_Mur2 SINE Alu -77 72 1 9 1413 408 282 6 134 chr9 108528173 108528262 -15547910 - RSINE1 SINE B4 -84 81 6 9 1413 817 225 13 74 chr9 108528274 108528504 -15547668 - B3 SINE B2 0 216 1 9 1413 392 214 16 97 chr9 108528504 108528628 -15547544 - PB1D10 SINE Alu -3 114 1 9 1413 562 237 142 52 chr9 108528982 108529249 -15546923 + B4A SINE B4 2 292 0 9 1413 888 177 167 0 chr9 108530057 108530249 -15545923 - URR1B DNA MER1_type 0 225 2 9 1413 1535 207 87 11 chr9 108530343 108530700 -15545472 + ORR1C2 LTR MaLR 1 384 0 9 1413 180 0 0 0 chr9 108530836 108530856 -15545316 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1413 598 92 110 1 chr9 108530876 108530981 -15545191 - B1_Mur4 SINE Alu -15 135 21 9 1413 703 197 156 6 chr9 108532398 108532554 -15543618 - ID_B1 SINE B4 -2 222 55 1 1413 513 0 0 0 chr9 108532554 108532611 -15543561 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1413 703 197 156 6 chr9 108532611 108532633 -15543539 - ID SINE ID -170 54 19 1 1413 2211 149 58 13 chr9 108533287 108533680 -15542492 + MTC LTR MaLR 9 419 -2 1 1413 594 292 55 32 chr9 108534053 108534272 -15541900 + ID_B1 SINE B4 1 224 0 1 1413 1148 171 35 35 chr9 108534497 108534757 -15541415 - ORR1B2-int LTR MaLR -1249 260 1 1 1413 1642 157 42 44 chr9 108534761 108535121 -15541051 - ORR1B2 LTR MaLR -8 359 1 1 1413 827 213 85 10 chr9 108535324 108535523 -15540649 + B3 SINE B2 1 214 -2 1 1413 339 270 33 50 chr9 108535559 108535680 -15540492 - ID_B1 SINE B4 -100 124 6 1 1413 315 309 176 0 chr9 108536130 108536266 -15539906 + RSINE1 SINE B4 2 161 -4 1 1413 540 224 23 31 chr9 108536688 108536817 -15539355 - B1_Mur3 SINE Alu -21 128 1 1 1413 256 209 114 23 chr9 108536921 108537009 -15539163 - PB1D9 SINE Alu -4 116 21 1 1413 528 16 0 0 chr9 108537018 108537079 -15539093 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 1 1413 213 39 0 0 chr9 108537079 108537104 -15539068 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1 1413 664 68 117 0 chr9 108537104 108537207 -15538965 - B1_Mm SINE Alu -11 136 22 1 1413 411 188 23 23 chr9 108537285 108537372 -15538800 + PB1D9 SINE Alu 23 109 -11 1 1413 180 0 0 0 chr9 108537372 108537392 -15538780 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1413 397 143 0 16 chr9 108537401 108537465 -15538707 + B3 SINE B2 2 64 -152 1 1413 367 179 159 45 chr9 108537682 108537766 -15538406 + B1_Mur1 SINE Alu 36 129 -20 1 1413 1846 162 93 23 chr9 108537766 108538152 -15538020 + MTC LTR MaLR 1 413 -8 1 1413 1190 48 0 7 chr9 108538193 108538339 -15537833 + B1_Mus2 SINE Alu 1 145 -2 1 1413 249 243 0 41 chr9 108538340 108538413 -15537759 + B4A SINE B4 215 284 -8 1 1413 316 311 0 0 chr9 108538415 108538489 -15537683 + B1F SINE Alu 1 74 -75 1 1413 421 213 31 31 chr9 108538577 108538674 -15537498 + ID_B1 SINE B4 128 224 0 1 1413 408 250 160 23 chr9 108538674 108538805 -15537367 + RSINE1 SINE B4 4 152 -13 1 1413 200 302 0 0 chr9 108538824 108538877 -15537295 + A-rich Low_complexity Low_complexity 3 55 0 1 1413 1211 48 0 0 chr9 108539113 108539259 -15536913 - B1_Mus2 SINE Alu 0 147 2 1 1413 397 264 26 26 chr9 108540887 108541000 -15535172 - B1_Mur2 SINE Alu 0 149 37 1 1413 1332 46 127 0 chr9 108541433 108541606 -15534566 - B2_Mm2 SINE B2 0 195 1 1 1413 474 259 48 27 chr9 108541736 108541883 -15534289 + RSINE1 SINE B4 4 153 -12 1 1413 715 203 14 0 chr9 108541900 108542038 -15534134 - B1_Mur1 SINE Alu -6 143 4 1 1413 534 232 2 25 chr9 108542587 108542722 -15533450 - B1_Mur4 SINE Alu -9 140 7 1 1413 752 178 272 0 chr9 108542728 108542897 -15533275 - B3 SINE B2 0 216 2 1 1413 288 0 0 0 chr9 108543448 108543480 -15532692 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1413 213 222 39 65 chr9 108543488 108543565 -15532607 + PB1 SINE Alu 51 125 -2 1 1413 280 128 253 0 chr9 108543589 108543665 -15532507 + B1_Mur2 SINE Alu 52 149 0 1 1413 212 273 0 0 chr9 108543684 108543728 -15532444 + polypurine Low_complexity Low_complexity 4 47 0 1 1413 452 212 103 81 chr9 108543737 108543911 -15532261 + B3A SINE B2 5 182 -16 1 1413 818 179 21 0 chr9 108543964 108544104 -15532068 + B1_Mur4 SINE Alu 3 145 -5 1 1413 203 189 75 0 chr9 108544105 108544158 -15532014 + GA-rich Low_complexity Low_complexity 4 60 0 1 1413 613 45 0 22 chr9 108544265 108544355 -15531817 - B1_Mur4 SINE Alu 0 150 63 1 1413 441 0 0 0 chr9 108544445 108544494 -15531678 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1413 386 147 29 0 chr9 108544754 108544822 -15531350 - PB1D9 SINE Alu -2 118 49 1 1413 411 278 52 0 chr9 108544890 108545005 -15531167 - ID_B1 SINE B4 -16 208 88 1 1413 381 271 68 30 chr9 108545153 108545286 -15530886 - ID_B1 SINE B4 -3 221 84 1 1413 941 39 130 15 chr9 108546024 108546155 -15530017 + B1_Mus2 SINE Alu 2 147 0 1 1413 252 77 0 0 chr9 108546155 108546194 -15529978 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1413 351 0 0 0 chr9 108546220 108546259 -15529913 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 1413 254 143 24 0 chr9 108546829 108546871 -15529301 - B1_Mus2 SINE Alu -11 136 94 1 1413 1506 44 27 16 chr9 108546910 108547095 -15529077 + B2_Mm2 SINE B2 1 187 -8 1 1413 515 234 71 28 chr9 108547381 108547522 -15528650 - B1_Mur2 SINE Alu -2 147 1 1 1413 1323 97 27 5 chr9 108547654 108547841 -15528331 + B2_Mm2 SINE B2 3 193 -2 1 1413 527 202 64 0 chr9 108548086 108548195 -15527977 - B1_Mur1 SINE Alu -22 127 12 1 1413 247 214 83 28 chr9 108548399 108548471 -15527701 + ID_B1 SINE B4 91 166 -58 1 1413 967 59 21 4 chr9 108548629 108548767 -15527405 - B1_Mus1 SINE Alu -7 141 20 1 1413 449 269 59 86 chr9 108548645 108548832 -15527340 - B4 SINE B4 -73 219 38 1 1413 455 159 45 0 chr9 108549307 108549395 -15526777 + B1_Mur3 SINE Alu 34 125 -24 1 1413 204 311 55 24 chr9 108549536 108549641 -15526531 - MIRb SINE MIR -123 145 38 1 1413 25 0 0 0 chr9 108549856 108549881 -15526291 + AT_rich Low_complexity Low_complexity 1 25 0 1 1413 248 272 129 11 chr9 108549889 108549982 -15526190 - PB1D9 SINE Alu -7 113 10 1 1413 1230 55 0 0 chr9 108550096 108550242 -15525930 + B1_Mus2 SINE Alu 2 147 0 1 1413 647 164 117 0 chr9 108550653 108550781 -15525391 + B1_Mm SINE Alu 3 145 -2 1 1413 507 285 49 22 chr9 108550815 108550998 -15525174 - MER3 DNA MER1_type -16 193 6 1 1413 227 186 23 0 chr9 108551585 108551628 -15524544 + (CAGGC)n Simple_repeat Simple_repeat 2 45 0 1 1413 667 164 33 40 chr9 108551951 108552103 -15524069 - RSINE1 SINE B4 -2 163 13 1 1413 268 272 229 7 chr9 108552813 108552970 -15523202 + B3 SINE B2 1 195 -3 1 1413 266 247 60 24 chr9 108552973 108553056 -15523116 - B1_Mur1 SINE Alu 0 149 64 1 1413 691 91 11 0 chr9 108553189 108553301 -15522871 + B1_Mus2 SINE Alu 27 150 0 1 1413 266 235 0 141 chr9 108553311 108553410 -15522762 + B1_Mur1 SINE Alu 65 149 0 1 1413 1203 61 7 0 chr9 108553415 108553562 -15522610 + B1_Mus1 SINE Alu 1 148 0 1 1413 1203 239 82 94 chr9 108553600 108553759 -15522413 + MTD LTR MaLR 43 199 -220 1 1413 697 194 45 30 chr9 108553759 108553892 -15522280 + B1_Mus1 SINE Alu 1 135 -13 1 1413 330 26 0 0 chr9 108553893 108553932 -15522240 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1413 1203 231 89 95 chr9 108553932 108554134 -15522038 + MTD LTR MaLR 200 404 -15 1 1413 395 248 225 13 chr9 108554501 108554652 -15521520 + B3 SINE B2 21 203 -13 1 1413 1386 132 20 24 chr9 108554881 108555129 -15521043 - RLTR22_Mur LTR ERVK -1600 248 2 1 1413 324 0 0 0 chr9 108555129 108555165 -15521007 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1413 543 121 0 0 chr9 108555169 108555252 -15520920 + B1_Mur3 SINE Alu 57 139 -10 1 1413 799 214 43 27 chr9 108555298 108555485 -15520687 + B3 SINE B2 2 191 -25 1 1413 458 272 6 55 chr9 108555490 108555673 -15520499 + ID_B1 SINE B4 50 223 -1 1 1413 765 161 0 28 chr9 108555537 108555678 -15520494 + B1_Mur3 SINE Alu 13 149 0 1 1413 278 278 96 73 chr9 108555736 108555825 -15520347 + B1F1 SINE Alu 11 98 -51 1 1413 3457 42 136 0 chr9 108555825 108556259 -15519913 - MT2_Mm LTR ERVL 0 493 1 1 1413 278 278 96 73 chr9 108556259 108556305 -15519867 + B1F1 SINE Alu 99 149 0 1 1413 3513 18 5 0 chr9 108556327 108556719 -15519453 - MTA_Mm LTR MaLR -2 394 1 1 1413 518 218 82 0 chr9 108557210 108557320 -15518852 - PB1D9 SINE Alu 0 120 2 1 1413 180 77 0 0 chr9 108557328 108557354 -15518818 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1413 1106 168 15 39 chr9 108557438 108557643 -15518529 - B3 SINE B2 -14 202 3 1 1413 803 178 6 50 chr9 108557861 108557993 -15518179 - MTC LTR MaLR -8 413 289 1 1413 5281 69 56 92 chr9 108557993 108558081 -15518091 + RLTR22_Mus LTR ERVK 2 89 -1719 1 1413 7407 18 4 0 chr9 108558081 108558900 -15517272 - RLTR13B2 LTR ERVK 0 822 1 1 1413 5281 69 56 92 chr9 108558900 108559110 -15517062 + RLTR22_Mus LTR ERVK 90 294 -1514 1 1413 1214 48 0 0 chr9 108559110 108559256 -15516916 + B1_Mm SINE Alu 2 147 0 1 1413 5281 69 56 92 chr9 108559256 108559818 -15516354 + RLTR22_Mus LTR ERVK 295 832 -976 1 1413 1206 62 0 0 chr9 108559915 108560061 -15516111 - B1_Mm SINE Alu 0 147 2 1 1413 1390 155 102 4 chr9 108560347 108560613 -15515559 - MTC LTR MaLR -129 292 1 1 1413 1395 166 122 17 chr9 108560742 108561030 -15515142 - ORR1A3 LTR MaLR -8 318 1 1 1413 533 273 15 8 chr9 108561030 108561159 -15515013 + B1F2 SINE Alu 20 149 0 1 1413 252 0 0 0 chr9 108561240 108561268 -15514904 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1413 547 284 59 91 chr9 108561309 108561596 -15514576 - B4A SINE B4 -8 284 7 1 1413 1136 68 0 7 chr9 108561669 108561816 -15514356 + B1_Mus2 SINE Alu 2 147 0 1 1413 345 100 0 0 chr9 108561816 108561866 -15514306 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1413 1582 52 5 0 chr9 108562216 108562408 -15513764 + B2_Mm1a SINE B2 1 193 0 1 1413 286 145 33 156 chr9 108562429 108562519 -15513653 + B2_Mm2 SINE B2 2 80 -115 1 1413 330 26 0 0 chr9 108562538 108562577 -15513595 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1413 1273 41 0 0 chr9 108562602 108562749 -15513423 - B1_Mus2 SINE Alu 0 147 1 1 1413 309 320 189 92 chr9 108562910 108563281 -15512891 + L2a LINE L2 2171 2593 -826 1 1413 825 225 60 5 chr9 108563281 108563482 -15512690 - B3 SINE B2 -1 215 4 2 1413 309 329 161 80 chr9 108563482 108564128 -15512044 + L2a LINE L2 2594 3273 -153 1 1413 219 69 0 0 chr9 108565475 108565504 -15510668 + (TTC)n Simple_repeat Simple_repeat 2 30 0 2 1413 221 136 0 43 chr9 108566215 108566261 -15509911 + T-rich Low_complexity Low_complexity 1 44 0 2 1413 354 215 41 41 chr9 108566261 108566358 -15509814 - ID_B1 SINE B4 0 224 128 2 1413 1129 39 176 0 chr9 108566510 108566663 -15509509 + B2_Mm2 SINE B2 1 180 -15 2 1413 612 73 0 0 chr9 108566663 108566745 -15509427 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 2 1413 3070 26 0 0 chr9 108566758 108567098 -15509074 + MERVL-int LTR ERVL 4135 4474 -1011 2 1413 508 121 48 0 chr9 108567098 108567181 -15508991 + B1_Mus2 SINE Alu 61 147 0 2 1413 1350 225 50 82 chr9 108567329 108567706 -15508466 + MTEa LTR MaLR 11 375 -4 2 1413 1530 111 0 14 chr9 108567755 108567975 -15508197 - ORR1A2 LTR MaLR -8 319 103 2 1413 1655 31 0 0 chr9 108567978 108568173 -15507999 - MT2_Mm LTR ERVL 0 493 299 2 1413 2017 20 4 4 chr9 108568169 108568419 -15507753 - MT-int LTR MaLR -72 1026 777 2 1413 558 0 0 0 chr9 108568420 108568482 -15507690 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 2 1413 702 141 65 29 chr9 108568497 108568636 -15507536 + B1_Mur3 SINE Alu 2 145 -4 2 1413 192 152 0 0 chr9 108568645 108568678 -15507494 + GA-rich Low_complexity Low_complexity 6 38 0 2 1413 404 244 87 51 chr9 108568753 108569040 -15507132 - MLT1A1 LTR MaLR -33 472 23 2 1413 1057 97 0 46 chr9 108569168 108569320 -15506852 - B1_Mus1 SINE Alu -2 146 2 2 1413 598 209 36 119 chr9 108569324 108569492 -15506680 + B4 SINE B4 70 223 -69 2 1413 1058 72 0 21 chr9 108569352 108569493 -15506679 + B1_Mus1 SINE Alu 10 147 -1 2 1413 22 0 0 0 chr9 108569517 108569539 -15506633 + AT_rich Low_complexity Low_complexity 1 22 0 2 1413 551 195 131 54 chr9 108569570 108569738 -15506434 - B3A SINE B2 -16 182 2 2 1413 782 144 62 35 chr9 108569766 108569910 -15506262 - B1_Mur3 SINE Alu 0 149 2 2 1413 332 283 66 16 chr9 108570141 108570263 -15505909 - MLT1F1 LTR MaLR -11 558 431 2 1413 855 152 0 38 chr9 108570272 108570334 -15505838 + polypyrimidine Low_complexity Low_complexity 119 178 0 2 1413 1272 34 0 0 chr9 108570334 108570481 -15505691 - B1_Mus2 SINE Alu 0 147 1 2 1413 855 152 0 38 chr9 108570481 108570603 -15505569 + polypyrimidine Low_complexity Low_complexity 1 118 0 2 1413 624 187 65 8 chr9 108570603 108570743 -15505429 - B1_Mur3 SINE Alu 0 147 1 2 1413 510 207 0 83 chr9 108570748 108570869 -15505303 - ID_B1 SINE B4 -3 221 111 2 1413 330 26 0 0 chr9 108570882 108570921 -15505251 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1413 291 54 0 0 chr9 108570921 108570957 -15505215 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1413 1320 62 67 0 chr9 108571082 108571261 -15504911 + B2_Mm1t SINE B2 2 192 -1 2 1413 592 219 0 9 chr9 108571333 108571448 -15504724 + B1_Mur4 SINE Alu 3 116 -34 2 1413 1520 50 0 0 chr9 108571557 108571737 -15504435 + B2_Mm2 SINE B2 2 181 -14 2 1413 213 312 156 0 chr9 108571935 108571999 -15504173 + ID4_ SINE ID 2 75 -8 2 1413 464 252 99 30 chr9 108572466 108572575 -15503597 + PB1D10 SINE Alu 10 130 -19 2 1413 605 265 87 51 chr9 108572575 108572770 -15503402 + B3 SINE B2 4 205 -11 2 1413 400 252 99 30 chr9 108572770 108572791 -15503381 + B1F1 SINE Alu 131 148 -1 2 1413 1178 55 14 0 chr9 108572937 108573082 -15503090 - B1_Mur4 SINE Alu -2 148 2 2 1413 853 200 137 16 chr9 108573120 108573303 -15502869 - B3 SINE B2 -11 205 1 2 1413 210 340 29 29 chr9 108573322 108573425 -15502747 - PB1D7 SINE Alu -9 111 9 2 1413 984 101 0 0 chr9 108574322 108574461 -15501711 - B1_Mus2 SINE Alu 0 147 9 2 1413 210 150 0 0 chr9 108574461 108574501 -15501671 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1413 815 210 118 0 chr9 108575216 108575402 -15500770 + B3 SINE B2 3 210 -6 2 1413 713 265 72 0 chr9 108575411 108575577 -15500595 - ID_B1 SINE B4 -45 179 2 2 1413 1010 170 48 19 chr9 108575607 108575817 -15500355 - B3 SINE B2 0 216 1 2 1413 1042 61 0 0 chr9 108575955 108576086 -15500086 - B1_Mus2 SINE Alu -1 146 16 2 1413 1337 112 5 0 chr9 108577032 108577220 -15498952 + B2_Mm2 SINE B2 2 190 -5 2 1413 1662 31 0 0 chr9 108577335 108577527 -15498645 - B2_Mm1a SINE B2 0 193 2 2 1413 835 191 0 7 chr9 108577531 108577668 -15498504 - B1_Mur1 SINE Alu -1 148 13 2 1413 406 289 42 97 chr9 108577536 108577701 -15498471 - B4 SINE B4 -72 220 65 2 1413 938 129 29 0 chr9 108577739 108577879 -15498293 - B1_Mur3 SINE Alu -1 148 5 2 1413 407 321 38 8 chr9 108577894 108578026 -15498146 - B1F1 SINE Alu -7 142 7 2 1413 287 331 25 75 chr9 108578026 108578048 -15498124 - ID_B1 SINE B4 -1 196 72 2 1413 539 291 0 34 chr9 108578114 108578260 -15497912 + ID_B1 SINE B4 84 224 0 2 1413 182 263 33 50 chr9 108578707 108578767 -15497405 - MIR SINE MIR -90 118 60 2 1413 687 250 108 92 chr9 108578941 108579311 -15496861 + MTE2a LTR MaLR 3 378 -1 2 1413 207 274 65 0 chr9 108579491 108579553 -15496619 - MIR SINE MIR -56 152 87 2 1413 1182 62 14 0 chr9 108579685 108579831 -15496341 - B1_Mus1 SINE Alu 0 148 1 2 1413 424 221 98 8 chr9 108580096 108580112 -15496060 - B1F1 SINE Alu -1 148 133 2 1413 1340 67 50 6 chr9 108580112 108580293 -15495879 - B2_Mm2 SINE B2 -5 190 2 2 1413 514 206 13 0 chr9 108580293 108580399 -15495773 - PB1D10 SINE Alu -17 132 15 2 1413 525 221 45 15 chr9 108580593 108580726 -15495446 + B1F1 SINE Alu 12 148 -1 2 1413 318 250 0 0 chr9 108580838 108580898 -15495274 + ID4_ SINE ID 9 68 -15 2 1413 384 232 36 164 chr9 108581047 108581212 -15494960 - ID_B1 SINE B4 0 224 81 2 1413 470 259 17 35 chr9 108581301 108581417 -15494755 - RSINE1 SINE B4 -48 117 4 2 1413 650 184 0 123 chr9 108581424 108581579 -15494593 - B1_Mur1 SINE Alu -1 148 13 2 1413 348 310 11 11 chr9 108581620 108581708 -15494464 - B1F SINE Alu -13 136 49 2 1413 325 333 7 46 chr9 108581778 108581916 -15494256 - ID_B1 SINE B4 -78 214 71 2 1413 761 195 74 33 chr9 108581942 108582186 -15493986 - L1MDa LINE L1 -5239 1394 1141 2 1413 192 77 0 0 chr9 108582186 108582212 -15493960 + (CATA)n Simple_repeat Simple_repeat 3 28 0 2 1413 492 262 135 0 chr9 108582228 108582369 -15493803 - B4 SINE B4 -4 288 129 2 1413 246 290 43 0 chr9 108582813 108582882 -15493290 - tRNA-Ala-GCY_ tRNA tRNA -3 72 1 2 1413 262 189 38 0 chr9 108582834 108582887 -15493285 - ID4 SINE ID -27 56 2 2 1413 725 159 87 0 chr9 108583111 108583249 -15492923 + B1_Mur4 SINE Alu 1 150 0 2 1413 838 229 112 0 chr9 108583286 108583465 -15492707 + B3 SINE B2 1 199 -17 2 1413 527 165 173 0 chr9 108583528 108583661 -15492511 + Lx9 LINE L1 7359 7514 -130 2 1413 227 179 55 28 chr9 108583687 108583796 -15492376 + (TA)n Simple_repeat Simple_repeat 2 113 0 2 1413 339 213 57 51 chr9 108583810 108583864 -15492308 + Lx9 LINE L1 7480 7528 -116 2 1413 213 39 0 0 chr9 108583864 108583890 -15492282 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1413 339 213 57 51 chr9 108583890 108583993 -15492179 + Lx9 LINE L1 7529 7638 -6 2 1413 1076 23 0 0 chr9 108584009 108584139 -15492033 + B1_Mus1 SINE Alu 8 137 -11 2 1413 323 136 0 17 chr9 108584157 108584217 -15491955 + GA-rich Low_complexity Low_complexity 2 60 0 2 1413 646 173 18 0 chr9 108584851 108584961 -15491211 - ID_B1 SINE B4 0 224 113 2 1413 467 219 73 59 chr9 108584961 108584983 -15491189 - B1F SINE Alu -1 144 11 2 1413 330 152 0 0 chr9 108585710 108585769 -15490403 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1413 225 213 0 21 chr9 108585878 108585926 -15490246 + CT-rich Low_complexity Low_complexity 3 49 0 2 1413 698 178 0 33 chr9 108587733 108587855 -15488317 + RSINE1 SINE B4 16 133 -32 2 1413 894 35 9 0 chr9 108587908 108588021 -15488151 - B1_Mus2 SINE Alu -32 115 2 2 1413 844 230 34 53 chr9 108588021 108588117 -15488055 - B4 SINE B4 -199 93 2 2 1413 1239 48 0 0 chr9 108588150 108588297 -15487875 + B1_Mm SINE Alu 1 147 0 2 1413 1335 70 0 11 chr9 108588339 108588513 -15487659 - B2_Mm2 SINE B2 -23 172 1 2 1413 296 228 0 48 chr9 108588619 108588702 -15487470 + CT-rich Low_complexity Low_complexity 4 82 0 2 1413 338 293 113 8 chr9 108589514 108589638 -15486534 - B1F1 SINE Alu -1 148 12 2 1413 514 276 23 8 chr9 108589724 108589852 -15486320 + ID_B1 SINE B4 92 221 -3 2 1413 474 314 8 8 chr9 108590846 108590965 -15485207 + ID_B1 SINE B4 64 182 -42 2 1413 1168 49 0 7 chr9 108591101 108591239 -15484933 + B1_Mus2 SINE Alu 1 138 -9 2 1413 207 0 0 0 chr9 108591239 108591262 -15484910 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1413 348 219 171 21 chr9 108592049 108592236 -15483936 - B3 SINE B2 0 216 2 2 1413 365 301 15 75 chr9 108592259 108592392 -15483780 - PB1 SINE Alu -2 125 1 2 1413 791 144 90 8 chr9 108592812 108592945 -15483227 + B1_Mus2 SINE Alu 3 146 -1 2 1413 251 176 67 50 chr9 108593030 108593090 -15483082 - ID_B1 SINE B4 0 224 164 2 1413 227 79 26 0 chr9 108593167 108593205 -15482967 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 2 1413 203 290 55 135 chr9 108593938 108594249 -15481923 + L2b LINE L2 2929 3214 -161 2 1413 293 47 23 0 chr9 108594524 108594567 -15481605 + (CGG)n Simple_repeat Simple_repeat 3 46 0 3 1413 23 33 0 0 chr9 108594742 108594772 -15481400 + GC_rich Low_complexity Low_complexity 1 30 0 3 1413 298 320 0 0 chr9 108595509 108595584 -15480588 - B1F1 SINE Alu -33 116 42 3 1413 236 300 27 41 chr9 108595535 108595608 -15480564 - 4.5SRNA scRNA scRNA -9 85 14 3 1413 301 330 51 17 chr9 108595685 108595802 -15480370 - L1MC5 LINE L1 -100 7861 7741 3 1413 228 67 0 0 chr9 108595824 108595854 -15480318 + (TCC)n Simple_repeat Simple_repeat 1 30 0 3 1413 634 197 123 23 chr9 108596080 108596210 -15479962 - B1_Mur2 SINE Alu -5 144 2 3 1413 552 239 54 20 chr9 108596219 108596398 -15479774 - B3 SINE B2 -1 194 2 3 1413 300 292 90 7 chr9 108596628 108596783 -15479389 - L1M4 LINE L1 -377 5801 5634 3 1413 377 253 26 53 chr9 108596802 108596920 -15479252 - PB1D10 SINE Alu 0 117 1 3 1413 567 83 617 0 chr9 108596924 108597044 -15479128 - B2_Mm2 SINE B2 0 195 2 3 1413 332 176 74 4 chr9 108597054 108597158 -15479014 - B1_Mur4 SINE Alu 0 150 1 3 1413 587 254 24 0 chr9 108597417 108597543 -15478629 + B1F2 SINE Alu 3 131 -18 3 1413 696 214 52 73 chr9 108597614 108597806 -15478366 - B3A SINE B2 -2 196 9 3 1413 334 211 81 91 chr9 108597838 108597937 -15478235 - PB1 SINE Alu -8 119 22 3 1413 254 87 22 0 chr9 108597938 108597984 -15478188 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 3 1413 468 0 0 0 chr9 108598016 108598068 -15478104 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 3 1413 544 320 46 6 chr9 108598073 108598246 -15477926 - B4 SINE B4 -89 203 24 3 1413 1202 54 0 0 chr9 108598257 108598404 -15477768 - B1_Mus2 SINE Alu 0 147 1 3 1413 1504 37 21 21 chr9 108598404 108598594 -15477578 - B2_Mm1a SINE B2 -2 191 1 3 1413 1139 71 143 0 chr9 108598610 108598778 -15477394 - B2_Mm1t SINE B2 0 193 2 3 1413 581 288 85 28 chr9 108598778 108598989 -15477183 - ID_B1 SINE B4 0 224 2 3 1413 1247 90 73 0 chr9 108598989 108599166 -15477006 - B2_Mm2 SINE B2 -4 191 2 3 1413 1264 102 16 26 chr9 108599242 108599271 -15476901 - B2_Mm2 SINE B2 -5 190 165 3 1413 261 75 0 0 chr9 108599271 108599311 -15476861 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3 1413 1264 102 16 26 chr9 108599311 108599473 -15476699 - B2_Mm2 SINE B2 -31 164 1 3 1413 1665 32 0 0 chr9 108600745 108600935 -15475237 + B2_Mm1a SINE B2 2 191 -2 3 1413 609 168 47 0 chr9 108601252 108601359 -15474813 + B1_Mur2 SINE Alu 29 140 -9 3 1413 233 0 62 0 chr9 108601359 108601391 -15474781 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1413 284 174 0 0 chr9 108601420 108601466 -15474706 + B1_Mur1 SINE Alu 96 141 -8 3 1413 412 207 188 65 chr9 108601540 108601726 -15474446 - B3 SINE B2 -7 209 1 3 1413 990 121 0 0 chr9 108601805 108601946 -15474226 - B1_Mur4 SINE Alu 0 150 10 3 1413 497 231 32 16 chr9 108602023 108602146 -15474026 - B4 SINE B4 -2 290 166 3 1413 1008 122 7 7 chr9 108602279 108602428 -15473744 - B1_Mur4 SINE Alu -1 149 1 3 1413 442 222 82 41 chr9 108602444 108602566 -15473606 - B1F2 SINE Alu 0 149 23 3 1413 615 214 136 8 chr9 108602765 108602897 -15473275 + B1_Mur2 SINE Alu 1 149 0 3 1413 271 275 0 55 chr9 108602949 108603022 -15473150 + MER5B DNA MER1_type 110 178 0 3 1413 1185 50 0 0 chr9 108603023 108603162 -15473010 + B1_Mus2 SINE Alu 1 139 -8 3 1413 321 93 0 0 chr9 108603162 108603216 -15472956 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 3 1413 676 205 24 0 chr9 108603702 108603829 -15472343 - B1_Mur4 SINE Alu -7 143 14 3 1413 407 100 0 0 chr9 108603860 108603920 -15472252 + B1_Mus1 SINE Alu 1 60 -88 3 1413 823 235 64 10 chr9 108603920 108604122 -15472050 - B3 SINE B2 0 216 4 3 1413 258 324 15 0 chr9 108604565 108604633 -15471539 - ID4_ SINE ID -11 72 4 3 1413 585 0 0 0 chr9 108604637 108604702 -15471470 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 3 1413 1119 85 41 24 chr9 108604703 108604872 -15471300 - B2_Mm2 SINE B2 -22 173 2 3 1413 396 286 112 70 chr9 108604874 108605017 -15471155 - B1_Mur1 SINE Alu 0 149 1 3 1413 622 99 29 37 chr9 108605027 108605163 -15471009 + C-rich Low_complexity Low_complexity 1 135 0 3 1413 1178 67 0 32 chr9 108605164 108605350 -15470822 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 3 1413 295 212 0 70 chr9 108605362 108605433 -15470739 - PB1D10 SINE Alu -31 86 21 3 1413 231 293 81 47 chr9 108605407 108605493 -15470679 + B3 SINE B2 128 216 0 3 1413 439 184 46 0 chr9 108606118 108606205 -15469967 - MIR SINE MIR -85 177 87 3 1413 24 0 0 0 chr9 108606695 108606719 -15469453 + AT_rich Low_complexity Low_complexity 1 24 0 3 1413 22 0 0 0 chr9 108606769 108606791 -15469381 + AT_rich Low_complexity Low_complexity 1 22 0 3 1413 28 0 0 0 chr9 108607468 108607496 -15468676 + AT_rich Low_complexity Low_complexity 1 28 0 3 1413 1337 68 22 22 chr9 108607500 108607681 -15468491 + B2_Mm2 SINE B2 3 183 -12 3 1413 192 152 0 0 chr9 108607682 108607715 -15468457 + (TATG)n Simple_repeat Simple_repeat 1 33 0 3 1413 383 280 11 11 chr9 108607718 108607812 -15468360 + L1MCa LINE L1 1890 1983 -4525 3 1413 664 164 27 0 chr9 108607814 108607924 -15468248 + B1_Mur3 SINE Alu 37 149 0 3 1413 3778 118 21 15 chr9 108607938 108608547 -15467625 - RMER6A LTR ERVK -1 755 143 3 1413 233 67 0 0 chr9 108608544 108608574 -15467598 - RMER6A LTR ERVK -429 32 3 3 1413 699 212 13 20 chr9 108608751 108608900 -15467272 + B1_Mur2 SINE Alu 2 149 0 3 1413 469 278 119 46 chr9 108608935 108609086 -15467086 + RSINE1 SINE B4 4 165 0 3 1413 504 243 136 17 chr9 108609098 108609274 -15466898 + B3A SINE B2 2 198 0 3 1413 29 0 0 0 chr9 108609316 108609345 -15466827 + AT_rich Low_complexity Low_complexity 1 29 0 3 1413 379 318 124 0 chr9 108609362 108609491 -15466681 - RSINE1 SINE B4 -19 146 2 3 1413 214 211 0 55 chr9 108609491 108609546 -15466626 - PB1D10 SINE Alu -1 116 65 3 1413 314 257 0 26 chr9 108609918 108609994 -15466178 - B1_Mm SINE Alu -71 76 3 3 1413 313 206 110 0 chr9 108610170 108610243 -15465929 + B4 SINE B4 3 83 -209 3 1413 213 39 0 0 chr9 108610362 108610388 -15465784 + (TCTCCC)n Simple_repeat Simple_repeat 3 28 0 3 1413 1045 171 40 10 chr9 108610685 108610886 -15465286 + ORR1C1 LTR MaLR 1 207 -171 3 1413 1201 42 7 0 chr9 108611731 108611875 -15464297 - B1_Mus1 SINE Alu -1 147 3 3 1413 909 91 8 0 chr9 108611937 108612069 -15464103 - B2_Mm2 SINE B2 -61 134 2 3 1413 1300 72 16 16 chr9 108612073 108612256 -15463916 - B2_Mm1t SINE B2 -9 184 2 3 1413 828 200 116 0 chr9 108612278 108612468 -15463704 - B3 SINE B2 0 216 5 3 1413 180 0 0 0 chr9 108612516 108612536 -15463636 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 3 1413 682 184 86 29 chr9 108612696 108612836 -15463336 + B1_Mus1 SINE Alu 1 148 0 3 1413 248 53 26 0 chr9 108612852 108612890 -15463282 + (GAGAA)n Simple_repeat Simple_repeat 2 40 0 3 1413 287 217 45 67 chr9 108612905 108612994 -15463178 + PB1D10 SINE Alu 31 117 0 3 1413 23 33 0 0 chr9 108613091 108613121 -15463051 + AT_rich Low_complexity Low_complexity 1 30 0 3 1413 180 191 48 0 chr9 108613278 108613320 -15462852 + MIRc SINE MIR 121 164 -104 3 1413 1057 234 81 81 chr9 108613540 108613912 -15462260 + MTE2a LTR MaLR 1 372 -7 3 1413 257 301 13 40 chr9 108613987 108614063 -15462109 - B1F2 SINE Alu -69 80 7 3 1413 197 33 0 32 chr9 108614099 108614130 -15462042 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1413 1168 22 0 0 chr9 108614130 108614264 -15461908 - B1_Mus2 SINE Alu -13 134 1 3 1413 293 279 79 26 chr9 108614778 108614892 -15461280 - PB1D9 SINE Alu 0 120 1 3 1413 248 321 71 0 chr9 108614892 108614951 -15461221 - B4A SINE B4 -205 87 21 3 1413 234 0 0 0 chr9 108615007 108615033 -15461139 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1413 1197 48 0 0 chr9 108615033 108615179 -15460993 - B1_Mm SINE Alu 0 147 2 3 1413 467 298 9 0 chr9 108615313 108615427 -15460745 - PB1D10 SINE Alu 0 117 3 3 1413 1168 176 24 0 chr9 108615438 108615648 -15460524 - B3 SINE B2 -1 215 1 3 1413 372 257 98 10 chr9 108615690 108615792 -15460380 - RSINE1 SINE B4 -27 138 28 3 1413 1041 216 44 5 chr9 108615824 108616029 -15460143 + B3 SINE B2 1 213 -3 3 1413 32 0 0 0 chr9 108616032 108616064 -15460108 + AT_rich Low_complexity Low_complexity 1 32 0 3 1413 372 133 0 0 chr9 108616196 108616256 -15459916 + (TTG)n Simple_repeat Simple_repeat 2 61 0 3 1413 1060 110 0 0 chr9 108616257 108616402 -15459770 - B1_Mus1 SINE Alu -2 146 2 3 1413 285 29 0 0 chr9 108616739 108616773 -15459399 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1413 606 262 73 0 chr9 108617241 108617432 -15458740 - B3 SINE B2 -11 205 1 3 1413 204 156 22 0 chr9 108617534 108617579 -15458593 + (ATTG)n Simple_repeat Simple_repeat 4 49 0 3 1413 573 88 2 0 chr9 108617580 108617674 -15458498 - B1_Mur4 SINE Alu -9 141 44 3 1413 299 292 10 40 chr9 108617724 108617824 -15458348 - PB1D10 SINE Alu -17 100 4 3 1413 990 45 104 0 chr9 108617923 108618057 -15458115 + B1_Mus1 SINE Alu 1 148 0 3 1413 24 0 0 0 chr9 108618057 108618081 -15458091 + AT_rich Low_complexity Low_complexity 1 24 0 3 1413 189 0 0 0 chr9 108618227 108618248 -15457924 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 1413 871 150 50 50 chr9 108618248 108618430 -15457742 - B2_Mm2 SINE B2 -12 183 2 4 1413 647 286 50 9 chr9 108618677 108618899 -15457273 + B4A SINE B4 1 231 -61 4 1413 521 178 103 0 chr9 108618899 108619006 -15457166 + PB1D9 SINE Alu 2 119 -1 4 1413 189 214 0 0 chr9 108619034 108619076 -15457096 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 4 1413 674 226 57 57 chr9 108620341 108620533 -15455639 + B3A SINE B2 4 195 -3 4 1413 288 282 161 31 chr9 108620539 108620700 -15455472 + L2a LINE L2 2623 2804 -615 4 1413 234 0 0 0 chr9 108620838 108620864 -15455308 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 4 1413 214 250 88 0 chr9 108621081 108621161 -15455011 + L2a LINE L2 3309 3395 -31 4 1413 647 87 0 9 chr9 108621327 108621432 -15454740 + (CATA)n Simple_repeat Simple_repeat 2 105 0 4 1413 1208 55 0 0 chr9 108621640 108621786 -15454386 - B1_Mus2 SINE Alu -1 146 1 4 1413 648 250 0 7 chr9 108621980 108622125 -15454047 - B1_Mur1 SINE Alu -1 148 5 4 1413 881 81 25 21 chr9 108622418 108622905 -15453267 + (TG)n Simple_repeat Simple_repeat 1 488 0 4 1413 390 346 22 22 chr9 108622905 108623044 -15453128 - RSINE1 SINE B4 -24 141 3 4 1413 607 249 94 30 chr9 108623044 108623243 -15452929 - B4A SINE B4 -62 230 19 4 1413 296 227 44 0 chr9 108623799 108623889 -15452283 + PB1D10 SINE Alu 5 102 -15 4 1413 414 277 251 17 chr9 108624019 108624254 -15451918 - B4A SINE B4 -1 291 2 4 1413 292 257 0 51 chr9 108624428 108624506 -15451666 - L1ME2z LINE L1 -206 6238 6165 4 1413 232 244 22 0 chr9 108624508 108624553 -15451619 - ID4 SINE ID -13 70 25 4 1413 323 232 1 120 chr9 108624615 108624740 -15451432 - B1F SINE Alu -1 148 18 4 1413 312 331 16 8 chr9 108624876 108625004 -15451168 - L1ME2z LINE L1 -420 6024 5896 4 1413 843 171 7 0 chr9 108625017 108625163 -15451009 - B1_Mus1 SINE Alu 0 148 2 4 1413 201 281 16 0 chr9 108625264 108625328 -15450844 + T-rich Low_complexity Low_complexity 2 66 0 4 1413 554 200 57 57 chr9 108625328 108625450 -15450722 - B1F1 SINE Alu -21 128 7 4 1413 679 121 12 2 chr9 108625546 108625666 -15450506 + B2_Mm2 SINE B2 1 121 -77 4 1413 745 318 20 12 chr9 108625663 108625908 -15450264 + B4A SINE B4 46 292 0 4 1413 198 91 0 0 chr9 108626018 108626051 -15450121 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1413 1173 84 84 0 chr9 108626074 108626252 -15449920 - B2_Mm2 SINE B2 -2 193 1 4 1413 274 303 53 0 chr9 108626850 108626926 -15449246 - B4 SINE B4 -7 285 206 4 1413 457 156 0 0 chr9 108626980 108627057 -15449115 - ID_B1 SINE B4 -5 219 143 4 1413 1745 182 138 51 chr9 108627395 108627886 -15448286 - RLTR20C LTR ERVK 0 534 1 4 1413 1222 289 95 4 chr9 108628231 108628714 -15447458 - L1MA5 LINE L1 -359 5941 5415 4 1413 475 228 94 133 chr9 108628737 108628906 -15447266 - ID_B1 SINE B4 0 224 62 4 1413 1221 41 0 7 chr9 108628906 108629052 -15447120 - B1_Mm SINE Alu -1 146 2 4 1413 475 228 94 133 chr9 108629052 108629115 -15447057 - ID SINE ID -163 61 1 4 1413 273 225 56 14 chr9 108629115 108629187 -15446985 - B4 SINE B4 -137 155 81 4 1413 1044 78 39 7 chr9 108629218 108629373 -15446799 - B2_Mm1t SINE B2 -33 160 1 4 1413 198 0 0 0 chr9 108629387 108629409 -15446763 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1413 670 222 0 0 chr9 108629415 108629541 -15446631 + B1_Mus2 SINE Alu 9 134 -13 4 1413 180 0 0 0 chr9 108629542 108629562 -15446610 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 1413 315 237 0 0 chr9 108629566 108629625 -15446547 + B3 SINE B2 2 60 -156 4 1413 261 0 0 0 chr9 108629625 108629654 -15446518 + (TCG)n Simple_repeat Simple_repeat 1 29 0 4 1413 1143 114 0 0 chr9 108629654 108629829 -15446343 + (TTC)n Simple_repeat Simple_repeat 2 176 0 4 1413 221 264 133 40 chr9 108629863 108629938 -15446234 - ID4 SINE ID 0 83 2 4 1413 750 129 17 0 chr9 108630093 108630209 -15445963 + B1_Mus2 SINE Alu 23 140 -7 4 1413 515 246 61 76 chr9 108631510 108631708 -15444464 - B3A SINE B2 -3 195 1 4 1413 665 246 0 0 chr9 108631844 108631986 -15444186 + ID_B1 SINE B4 77 218 -6 4 1413 1257 109 33 0 chr9 108632214 108632397 -15443775 + B2_Mm1t SINE B2 4 192 -1 4 1413 529 254 22 37 chr9 108632482 108632617 -15443555 - RSINE1 SINE B4 -31 134 2 4 1413 780 275 6 0 chr9 108632658 108632836 -15443336 - B3A SINE B2 -18 180 2 4 1413 604 178 92 49 chr9 108632844 108632986 -15443186 - B1_Mur3 SINE Alu -1 148 1 4 1413 1220 34 0 13 chr9 108633000 108633149 -15443023 - B1_Mm SINE Alu 0 147 1 4 1413 1167 202 0 23 chr9 108633159 108633377 -15442795 - B3 SINE B2 -3 213 1 4 1413 273 55 35 35 chr9 108633459 108633516 -15442656 + (TTATA)n Simple_repeat Simple_repeat 5 61 0 4 1413 1063 213 20 5 chr9 108633568 108633771 -15442401 - B3 SINE B2 -10 206 1 4 1413 203 162 0 0 chr9 108633778 108633815 -15442357 + T-rich Low_complexity Low_complexity 2 38 0 4 1413 424 270 141 0 chr9 108633932 108634095 -15442077 - B4 SINE B4 -8 284 99 4 1413 485 220 18 9 chr9 108634112 108634222 -15441950 - PB1D9 SINE Alu -1 119 9 4 1413 252 229 16 0 chr9 108634582 108634643 -15441529 + PB1D10 SINE Alu 41 102 -15 4 1413 419 301 136 5 chr9 108634665 108634879 -15441293 + L1M5 LINE L1 4069 4310 -1836 4 1413 895 248 58 24 chr9 108634884 108635091 -15441081 + B3 SINE B2 2 215 -1 4 1413 739 290 29 0 chr9 108635153 108635360 -15440812 - ID_B1 SINE B4 -11 213 1 4 1413 456 104 0 0 chr9 108636037 108636104 -15440068 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 4 1413 791 116 98 23 chr9 108636110 108636242 -15439930 - B1_Mur4 SINE Alu -8 142 1 4 1413 32 0 0 0 chr9 108636485 108636517 -15439655 + AT_rich Low_complexity Low_complexity 1 32 0 4 1413 685 197 65 7 chr9 108636526 108636664 -15439508 + B1_Mur1 SINE Alu 2 147 -2 4 1413 512 248 45 0 chr9 108637371 108637504 -15438668 + B1F2 SINE Alu 9 147 -2 4 1413 400 295 24 24 chr9 108637521 108637646 -15438526 + RSINE1 SINE B4 16 140 -25 4 1413 816 228 63 19 chr9 108637701 108637907 -15438265 + B3 SINE B2 2 216 0 4 1413 1082 80 0 0 chr9 108637981 108638118 -15438054 + B1_Mus2 SINE Alu 1 137 -10 4 1413 819 269 152 46 chr9 108638161 108638680 -15437492 + L1MD LINE L1 2203 2776 -3370 4 1413 1015 73 0 0 chr9 108638680 108638816 -15437356 + B2_Mm2 SINE B2 2 137 -58 4 1413 200 143 71 0 chr9 108638926 108638968 -15437204 + A-rich Low_complexity Low_complexity 5 49 0 4 1413 782 0 21 0 chr9 108639895 108639988 -15436184 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 4 1413 180 0 0 0 chr9 108640033 108640053 -15436119 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 1413 417 123 12 24 chr9 108640101 108640184 -15435988 - B2_Mm2 SINE B2 -5 190 109 4 1413 467 234 43 0 chr9 108640201 108640295 -15435877 - PB1D9 SINE Alu -21 99 2 4 1413 705 75 0 36 chr9 108640415 108640432 -15435740 - U6 snRNA snRNA -1 106 93 4 1413 5342 69 0 1 chr9 108640432 108641097 -15435075 - L1_Mus2 LINE L1 0 6566 5903 4 1413 705 75 0 36 chr9 108641097 108641189 -15434983 - U6 snRNA snRNA -15 92 1 4 1413 423 165 385 15 chr9 108641198 108641333 -15434839 - B2_Mm2 SINE B2 -9 186 2 4 1413 1079 82 0 0 chr9 108641368 108641503 -15434669 + B1_Mus1 SINE Alu 2 136 -12 4 1413 235 0 57 0 chr9 108641504 108641539 -15434633 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 4 1413 309 26 0 0 chr9 108642000 108642038 -15434134 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1413 479 231 59 17 chr9 108642295 108642414 -15433758 - B1F SINE Alu 0 149 26 4 1413 417 295 43 7 chr9 108642300 108642440 -15433732 - ID_B1 SINE B4 -3 221 77 4 1413 278 271 8 196 chr9 108643165 108643207 -15432965 + PB1D10 SINE Alu 9 44 -73 4 1413 810 151 27 14 chr9 108643207 108643355 -15432817 + B1_Mur4 SINE Alu 1 150 0 4 1413 278 271 8 196 chr9 108643355 108643445 -15432727 + PB1D10 SINE Alu 45 116 -1 4 1413 267 286 0 0 chr9 108643450 108643513 -15432659 + PB1D9 SINE Alu 1 63 -57 4 1413 226 196 0 67 chr9 108643577 108643637 -15432535 - ID4 SINE ID -26 57 2 4 1413 3481 15 5 8 chr9 108643914 108644311 -15431861 + MTA_Mm LTR MaLR 1 396 0 4 1413 1208 41 0 7 chr9 108644328 108644475 -15431697 - B1_Mm SINE Alu 0 147 2 4 1413 467 279 9 0 chr9 108644567 108644678 -15431494 + ID_B1 SINE B4 89 200 -24 4 1413 47 0 0 0 chr9 108645329 108645376 -15430796 + AT_rich Low_complexity Low_complexity 1 47 0 4 1413 330 231 9 55 chr9 108645626 108645736 -15430436 - MTEb LTR MaLR -8 371 267 4 1413 279 355 64 32 chr9 108645777 108645902 -15430270 - MTEb LTR MaLR -230 129 1 4 1413 243 49 0 89 chr9 108645950 108645995 -15430177 + B1_Mur3 SINE Alu 90 130 -19 4 1413 396 241 241 0 chr9 108646886 108646994 -15429178 + B1F2 SINE Alu 1 134 -15 4 1413 1180 55 14 0 chr9 108647116 108647262 -15428910 + B1_Mus1 SINE Alu 1 148 0 4 1413 225 94 0 0 chr9 108647265 108647297 -15428875 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1413 270 300 0 14 chr9 108648403 108648474 -15427698 - tRNA-Ala-GCY_ tRNA tRNA -4 71 2 4 1413 279 221 0 0 chr9 108648520 108648606 -15427566 + (CAGA)n Simple_repeat Simple_repeat 2 87 0 4 1413 533 211 0 22 chr9 108648619 108648803 -15427369 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 4 1413 231 239 0 0 chr9 108648834 108648922 -15427250 + (CAGA)n Simple_repeat Simple_repeat 4 91 0 4 1413 207 0 0 0 chr9 108650064 108650087 -15426085 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1413 238 118 0 73 chr9 108650141 108650196 -15425976 + MamSINE1 SINE tRNA 5 55 -235 4 1413 277 257 54 0 chr9 108650510 108650584 -15425588 + ID4 SINE ID 1 78 -5 4 1413 289 22 67 0 chr9 108651813 108651858 -15424314 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 4 1413 27 29 0 0 chr9 108652265 108652299 -15423873 + AT_rich Low_complexity Low_complexity 1 34 0 5 1413 1063 296 107 37 chr9 108652910 108653223 -15422949 - MLT2B4 LTR ERVL -8 548 214 5 1413 341 231 0 0 chr9 108653223 108653288 -15422884 - ID4 SINE ID -16 67 3 5 1413 1063 296 107 37 chr9 108653288 108653486 -15422686 - MLT2B4 LTR ERVL -343 213 1 5 1413 364 22 0 0 chr9 108654030 108654076 -15422096 + B1_Mus2 SINE Alu 96 141 -6 5 1413 560 14 14 0 chr9 108654081 108654150 -15422022 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 5 1413 245 289 93 0 chr9 108654256 108654353 -15421819 - PB1D10 SINE Alu -7 110 5 5 1413 524 162 152 8 chr9 108654818 108654836 -15421336 - B1_Mus2 SINE Alu -4 143 120 5 1413 441 0 0 0 chr9 108654836 108654885 -15421287 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1413 524 162 152 8 chr9 108654885 108654984 -15421188 - B1_Mus2 SINE Alu -28 119 11 5 1413 4107 48 81 8 chr9 108655148 108655670 -15420502 - LTRIS2 LTR ERV1 0 564 5 5 1413 1182 28 21 0 chr9 108656187 108656330 -15419842 - B1_Mm SINE Alu 0 147 2 5 1413 342 289 231 0 chr9 108656542 108656646 -15419526 + RSINE1 SINE B4 1 128 -37 5 1413 297 0 0 0 chr9 108656658 108656691 -15419481 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1413 224 266 48 48 chr9 108658107 108658190 -15417982 - PB1D10 SINE Alu -3 114 32 5 1413 216 262 16 0 chr9 108658201 108658262 -15417910 + CT-rich Low_complexity Low_complexity 3 64 0 5 1413 620 169 0 85 chr9 108658263 108658392 -15417780 - B1_Mur1 SINE Alu -10 139 22 5 1413 328 181 12 12 chr9 108658413 108658497 -15417675 + C-rich Low_complexity Low_complexity 3 86 0 5 176 250 289 38 38 chr9 108658621 108658700 -15417472 + B4A SINE B4 3 81 -211 5 1414 21 0 0 0 chr9 108658700 108658721 -15417451 + AT_rich Low_complexity Low_complexity 1 21 0 5 1414 779 142 8 8 chr9 108658732 108658860 -15417312 - B3 SINE B2 -88 128 1 5 1414 593 217 78 21 chr9 108658875 108659016 -15417156 + B1_Mur2 SINE Alu 1 149 0 5 1414 374 317 6 36 chr9 108659050 108659217 -15416955 + RSINE1 SINE B4 2 163 -2 5 1414 261 212 15 0 chr9 108659252 108659318 -15416854 - Lx6 LINE L1 -26 7434 7368 5 1414 800 225 65 11 chr9 108659353 108659537 -15416635 + B4A SINE B4 99 292 0 5 1414 1149 83 0 0 chr9 108659539 108659719 -15416453 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1414 291 316 51 51 chr9 108659725 108659882 -15416290 + MLT1G3 LTR MaLR 198 354 -241 5 1414 398 181 12 0 chr9 108660229 108660312 -15415860 - B3A SINE B2 -87 111 28 5 1414 1280 27 0 0 chr9 108660421 108660567 -15415605 + B1_Mm SINE Alu 2 147 0 5 1414 416 281 14 41 chr9 108660676 108660821 -15415351 - ID_B1 SINE B4 -4 220 80 5 1414 695 199 118 13 chr9 108660861 108661014 -15415158 - B3 SINE B2 0 216 48 5 1414 628 185 17 0 chr9 108661013 108661132 -15415040 + B1_Mur1 SINE Alu 29 149 0 5 1414 790 235 21 21 chr9 108661145 108661332 -15414840 - B3A SINE B2 -10 188 2 5 1414 1431 72 0 20 chr9 108661353 108661551 -15414621 - B2_Mm2 SINE B2 0 195 2 5 1414 211 200 0 0 chr9 108661578 108661613 -15414559 + (CGTG)n Simple_repeat Simple_repeat 4 38 0 5 1414 623 202 120 24 chr9 108661613 108661780 -15414392 - B3A SINE B2 -15 183 1 5 1414 693 249 23 0 chr9 108662255 108662428 -15413744 - B3 SINE B2 -39 177 1 5 1414 283 310 19 39 chr9 108662436 108662540 -15413632 - ID_B1 SINE B4 -5 219 118 5 1414 566 291 89 5 chr9 108662600 108662790 -15413382 + ID_B1 SINE B4 16 221 -3 5 1414 397 291 77 26 chr9 108662799 108662954 -15413218 + RSINE1 SINE B4 1 163 -2 5 1414 874 231 9 38 chr9 108663015 108663226 -15412946 + B3 SINE B2 1 205 -11 5 1414 383 270 11 11 chr9 108663433 108663609 -15412563 + CT-rich Low_complexity Low_complexity 2 177 0 5 1414 456 200 19 19 chr9 108663615 108663722 -15412450 - ID_B1 SINE B4 -1 223 117 5 1414 252 209 0 18 chr9 108663786 108663852 -15412320 - B1F SINE Alu 0 149 53 5 1414 682 201 0 0 chr9 108663879 108664001 -15412171 - B1_Mur1 SINE Alu -7 142 27 5 1414 351 0 0 0 chr9 108664016 108664055 -15412117 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1414 513 0 0 0 chr9 108664284 108664341 -15411831 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1414 487 126 115 0 chr9 108664341 108664428 -15411744 - B1_Mur4 SINE Alu -13 137 41 5 1414 267 130 0 0 chr9 108664480 108664534 -15411638 + (CCTG)n Simple_repeat Simple_repeat 2 55 0 5 1414 687 267 5 31 chr9 108664653 108664846 -15411326 - B3A SINE B2 0 198 11 5 1414 737 176 136 24 chr9 108664852 108665021 -15411151 - B3 SINE B2 -2 214 27 5 1414 8689 23 1 11 chr9 108665024 108665065 -15411107 - L1Md_F2 LINE L1 0 6582 6550 5 1414 1596 47 0 0 chr9 108665065 108665257 -15410915 - B2_Mm1a SINE B2 -1 192 1 5 1414 8689 33 6 7 chr9 108665257 108666761 -15409411 - L1Md_F2 LINE L1 -33 6549 5034 5 1414 268 75 0 0 chr9 108666761 108666801 -15409371 - B3 SINE B2 -176 40 1 5 1414 447 196 108 0 chr9 108666826 108666928 -15409244 - PB1D9 SINE Alu -7 113 1 5 1414 221 0 0 33 chr9 108666938 108666968 -15409204 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1414 301 215 0 15 chr9 108667069 108667135 -15409037 - B4A SINE B4 -45 247 183 5 1414 334 260 10 77 chr9 108667194 108667298 -15408874 - B4 SINE B4 -87 205 109 5 1414 519 273 111 30 chr9 108667552 108667621 -15408551 - L1MC2 LINE L1 -155 6189 6112 5 1414 716 266 135 25 chr9 108667621 108667948 -15408224 - MLT1A0 LTR MaLR 0 365 3 5 1414 519 273 111 30 chr9 108667948 108668112 -15408060 - L1MC2 LINE L1 -233 6111 5937 5 1414 314 261 0 14 chr9 108668314 108668384 -15407788 - B4 SINE B4 -5 287 219 5 1414 508 314 38 6 chr9 108668383 108668540 -15407632 - B3A SINE B2 -36 162 1 5 1414 902 274 26 0 chr9 108668540 108668753 -15407419 - B4 SINE B4 -62 230 12 5 1414 180 0 0 0 chr9 108668851 108668871 -15407301 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 1414 244 344 87 58 chr9 108668921 108669230 -15406942 + MLT1L LTR MaLR 148 465 -145 5 1414 403 327 13 72 chr9 108669238 108669475 -15406697 + L1ME3 LINE L1 5668 5890 -274 5 1414 462 269 46 40 chr9 108669478 108669629 -15406543 + RSINE1 SINE B4 2 153 -12 5 1414 241 284 107 36 chr9 108669633 108669801 -15406371 - RLTR21 LTR ERVK -331 1241 1062 5 1414 439 265 25 41 chr9 108669808 108669930 -15406242 + PB1 SINE Alu 5 124 -3 5 1414 423 87 0 0 chr9 108669930 108669999 -15406173 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 5 1414 350 299 0 20 chr9 108670004 108670103 -15406069 + Lx8 LINE L1 7213 7309 -164 5 1414 240 271 0 0 chr9 108670116 108670175 -15405997 + B3 SINE B2 2 60 -156 5 1414 1661 227 102 11 chr9 108670181 108670623 -15405549 + RLTR11A2 LTR ERVK 1 482 -45 5 1414 235 188 306 0 chr9 108670777 108670862 -15405310 + Lx8 LINE L1 7353 7463 -10 5 1414 1895 116 179 74 chr9 108671460 108671536 -15404636 - RMER4A LTR ERVK -4 462 368 5 1414 186 43 0 0 chr9 108671536 108671559 -15404613 + (AGGGGG)n Simple_repeat Simple_repeat 3 25 0 5 1414 1895 116 179 74 chr9 108671559 108671611 -15404561 - RMER4A LTR ERVK -99 367 280 5 1414 3301 24 39 0 chr9 108671611 108671992 -15404180 - MTA_Mm LTR MaLR 0 396 1 5 1414 1895 116 179 74 chr9 108671992 108672233 -15403939 - RMER4A LTR ERVK -187 279 50 5 1414 1194 48 0 7 chr9 108672233 108672381 -15403791 - B1_Mm SINE Alu 0 147 1 5 1414 1895 116 179 74 chr9 108672381 108672427 -15403745 - RMER4A LTR ERVK -417 49 3 5 1414 1767 175 22 6 chr9 108672427 108672738 -15403434 - MurERV4-int LTR ERVK 0 5260 4945 5 1414 3263 152 75 26 chr9 108672726 108672959 -15403213 - MurERV4-int LTR ERVK -3476 1784 1557 5 1414 189 0 0 0 chr9 108672959 108672980 -15403192 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1414 3263 152 75 26 chr9 108672980 108673359 -15402813 - MurERV4-int LTR ERVK -3704 1556 1144 5 1414 5893 165 35 16 chr9 108674553 108675597 -15400575 - MurERV4-int LTR ERVK -4102 1158 95 5 1414 1104 113 136 26 chr9 108675597 108675772 -15400400 - RMER4A LTR ERVK -235 231 34 5 1414 1443 34 0 11 chr9 108675772 108675951 -15400221 + L1Md_F3 LINE L1 6393 6569 -15 5 1414 1104 113 136 26 chr9 108675951 108675966 -15400206 - RMER4A LTR ERVK -433 33 20 5 1414 239 114 23 0 chr9 108675966 108676010 -15400162 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 5 1414 511 195 179 0 chr9 108676086 108676209 -15399963 - B1_Mur2 SINE Alu -4 145 1 5 1414 239 172 0 49 chr9 108676301 108676362 -15399810 - MADE2 DNA Mariner -13 67 10 5 1414 426 151 0 0 chr9 108676382 108676455 -15399717 + T-rich Low_complexity Low_complexity 1 73 0 5 1414 322 296 55 11 chr9 108676718 108676831 -15399341 - B1F2 SINE Alu -21 129 16 5 1414 1667 225 45 22 chr9 108676865 108677293 -15398879 + MTE-int LTR MaLR 1091 1938 -25 5 1414 314 160 208 26 chr9 108677700 108677777 -15398395 - 5S rRNA rRNA -30 91 1 5 1414 227 273 64 13 chr9 108677957 108678035 -15398137 + B3A SINE B2 1 82 -116 5 1414 1293 106 26 5 chr9 108678140 108678330 -15397842 + B2_Mm2 SINE B2 1 194 -1 5 1414 22 0 0 0 chr9 108678364 108678386 -15397786 + AT_rich Low_complexity Low_complexity 1 22 0 5 1414 715 227 0 0 chr9 108679289 108679421 -15396751 + B1F SINE Alu 12 143 -6 5 1414 498 250 215 23 chr9 108679977 108680149 -15396023 - ID_B1 SINE B4 0 224 20 5 1414 1764 158 29 42 chr9 108680260 108680670 -15395502 - RMER16 LTR ERVK -4 529 1 5 1414 11009 87 14 44 chr9 108680670 108680978 -15395194 - RMER16-int LTR ERVK 0 5406 5099 5 1414 1365 94 15 15 chr9 108680978 108681173 -15394999 + B2_Mm2 SINE B2 1 195 0 5 1414 11009 87 14 44 chr9 108681173 108681501 -15394671 - RMER16-int LTR ERVK -308 5098 4791 5 1414 1122 72 0 0 chr9 108681501 108681640 -15394532 + B1_Mus1 SINE Alu 2 140 -8 5 1414 243 0 0 0 chr9 108681640 108681667 -15394505 + (CAA)n Simple_repeat Simple_repeat 2 28 0 5 1414 11009 87 14 44 chr9 108681667 108682656 -15393516 - RMER16-int LTR ERVK -616 4790 3830 5 1414 1795 78 16 8 chr9 108682653 108682898 -15393274 - RMER16-int LTR ERVK -2336 3070 2824 5 1414 3776 81 38 8 chr9 108682915 108683437 -15392735 - RMER16-int LTR ERVK -4220 1186 649 5 1414 546 172 20 0 chr9 108683437 108683536 -15392636 - RMER16 LTR ERVK -432 101 1 5 1414 520 289 7 78 chr9 108683997 108684151 -15392021 + ID_B1 SINE B4 2 144 -80 5 1414 221 226 0 86 chr9 108684105 108684163 -15392009 + PB1D7 SINE Alu 18 70 -50 5 1414 495 259 0 0 chr9 108684851 108684959 -15391213 + PB1D7 SINE Alu 3 110 -10 5 1414 304 331 73 22 chr9 108684959 108684983 -15391189 + ID_B1 SINE B4 84 222 -2 5 1414 209 186 0 0 chr9 108685580 108685623 -15390549 + GA-rich Low_complexity Low_complexity 1 43 0 5 1414 277 337 69 10 chr9 108685763 108685865 -15390307 + MER81 DNA AcHobo 1 108 -6 5 1414 335 212 0 116 chr9 108687151 108687263 -15388909 + Lx8 LINE L1 7373 7471 -2 5 1414 566 214 113 15 chr9 108688029 108688162 -15388010 - B1_Mur1 SINE Alu -2 147 2 5 1414 658 191 96 0 chr9 108688272 108688408 -15387764 - B1_Mur3 SINE Alu 0 149 1 6 1414 808 77 28 82 chr9 108688427 108688576 -15387596 - B2_Mm2 SINE B2 -53 140 2 6 1414 336 216 32 54 chr9 108688787 108688880 -15387292 + PB1D10 SINE Alu 27 117 0 6 1414 21 57 0 0 chr9 108689156 108689191 -15386981 + AT_rich Low_complexity Low_complexity 1 35 0 6 1414 367 209 96 32 chr9 108689248 108689342 -15386830 - B1_Mur1 SINE Alu 0 149 50 6 1414 291 288 91 108 chr9 108689397 108689638 -15386534 - MT2B LTR ERVL -284 317 81 6 1414 261 139 0 0 chr9 108690648 108690691 -15385481 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1414 215 219 202 24 chr9 108690964 108691048 -15385124 + MIR SINE MIR 115 213 -49 6 1414 361 264 11 32 chr9 108691050 108691144 -15385028 + ID_B1 SINE B4 81 172 -52 6 1414 540 250 10 0 chr9 108691061 108691165 -15385007 + PB1D10 SINE Alu 8 112 -5 6 1414 673 232 198 11 chr9 108691170 108691357 -15384815 + ID_B1 SINE B4 3 224 0 6 1414 443 242 88 29 chr9 108691695 108691797 -15384375 - RSINE1 SINE B4 -44 121 14 6 1414 1151 197 10 0 chr9 108691823 108692026 -15384146 - B3 SINE B2 -11 205 1 6 1414 215 266 31 0 chr9 108692114 108692178 -15383994 + CT-rich Low_complexity Low_complexity 2 67 0 6 1414 310 219 151 24 chr9 108692180 108692306 -15383866 - B1F1 SINE Alu -7 142 1 6 1414 366 284 8 25 chr9 108692371 108692490 -15383682 - PB1D9 SINE Alu -3 117 1 6 1414 306 244 256 0 chr9 108692911 108693001 -15383171 + PB1D7 SINE Alu 2 114 -6 6 1414 961 151 7 0 chr9 108693011 108693157 -15383015 + B1_Mus1 SINE Alu 2 148 0 6 1414 502 179 25 109 chr9 108693206 108693325 -15382847 + PB1D9 SINE Alu 12 120 0 6 1414 875 189 104 10 chr9 108693687 108693880 -15382292 + B3 SINE B2 2 212 -4 6 1414 790 180 35 21 chr9 108693902 108694044 -15382128 + B1_Mur2 SINE Alu 6 149 0 6 1414 253 254 0 16 chr9 108694429 108694493 -15381679 + PB1D10 SINE Alu 54 116 -1 6 1414 461 302 53 20 chr9 108694496 108694648 -15381524 + RSINE1 SINE B4 3 159 -6 6 1414 230 233 0 0 chr9 108694717 108694760 -15381412 + PB1D7 SINE Alu 77 119 -1 6 1414 419 255 36 13 chr9 108694793 108694902 -15381270 + PB1D10 SINE Alu 1 112 -5 6 1414 267 31 0 0 chr9 108694919 108694951 -15381221 + (TATG)n Simple_repeat Simple_repeat 3 34 0 6 1414 251 318 63 36 chr9 108695827 108695938 -15380234 + PB1D10 SINE Alu 2 115 -2 6 1414 204 254 14 40 chr9 108696671 108696745 -15379427 + (CATG)n Simple_repeat Simple_repeat 2 73 0 6 1414 682 293 36 40 chr9 108696746 108696998 -15379174 - B4 SINE B4 0 292 42 6 1414 269 276 65 13 chr9 108697043 108697120 -15379052 - RSINE1 SINE B4 0 165 85 6 1414 232 291 0 52 chr9 108697214 108697272 -15378900 - PB1D10 SINE Alu -33 84 30 6 1414 580 274 118 40 chr9 108701941 108702093 -15374079 - RSINE1 SINE B4 -1 164 1 6 1414 211 222 0 0 chr9 108702511 108702556 -15373616 - RSINE1 SINE B4 -31 134 90 6 1414 1402 94 16 5 chr9 108702677 108702870 -15373302 - B2_Mm2 SINE B2 0 195 1 6 1414 3002 167 76 38 chr9 108702988 108703648 -15372524 - Lx9 LINE L1 -1 7643 6959 6 1414 881 225 66 44 chr9 108703865 108704093 -15372079 + B4A SINE B4 44 276 -16 6 1414 462 186 239 0 chr9 108704193 108704306 -15371866 + B1_Mur4 SINE Alu 3 142 -8 6 1414 239 307 58 29 chr9 108704559 108704663 -15371509 + ID_B1 SINE B4 2 108 -116 6 1414 280 319 33 11 chr9 108704681 108704773 -15371399 + B4A SINE B4 164 257 -35 6 1414 344 224 232 70 chr9 108704820 108705233 -15370939 - L1MC5 LINE L1 -527 7434 6955 6 1414 452 198 25 0 chr9 108705290 108705371 -15370801 - ID4 SINE ID 0 83 1 6 1414 598 271 79 50 chr9 108705509 108705711 -15370461 - MER58B DNA MER1_type 0 341 134 6 1414 359 56 19 0 chr9 108705711 108705765 -15370407 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1414 364 121 17 0 chr9 108705804 108705862 -15370310 - HAL1-3A_ME LINE L1 -831 2027 1969 6 1414 523 279 16 70 chr9 108706232 108706417 -15369755 + B3A SINE B2 2 176 -22 6 1414 730 201 52 0 chr9 108706454 108706588 -15369584 - B1_Mur1 SINE Alu -2 147 7 6 1414 406 243 26 78 chr9 108706487 108706603 -15369569 - MT2B LTR ERVL -337 264 155 6 1414 21 36 0 0 chr9 108706603 108706631 -15369541 + AT_rich Low_complexity Low_complexity 1 28 0 6 1414 296 243 54 0 chr9 108707217 108707291 -15368881 + ID4_ SINE ID 6 83 0 6 1414 313 215 31 0 chr9 108707305 108707370 -15368802 + ID4 SINE ID 5 71 -12 6 1414 1153 75 0 7 chr9 108707389 108707537 -15368635 - B1_Mus2 SINE Alu 0 147 1 6 1414 186 43 0 0 chr9 108708498 108708521 -15367651 + (C)n Simple_repeat Simple_repeat 1 23 0 6 1414 405 0 0 0 chr9 108709200 108709245 -15366927 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1414 297 237 53 0 chr9 108709400 108709476 -15366696 + PB1D9 SINE Alu 28 107 -13 6 1414 710 192 46 0 chr9 108709488 108709618 -15366554 + B1_Mur2 SINE Alu 1 136 -13 6 1414 380 195 149 25 chr9 108709775 108709874 -15366298 - PB1D10 SINE Alu 0 117 10 6 1414 200 204 0 20 chr9 108710684 108710734 -15365438 + (CGCGG)n Simple_repeat Simple_repeat 3 51 0 6 1414 180 0 0 0 chr9 108710792 108710812 -15365360 + (CCCGG)n Simple_repeat Simple_repeat 4 23 0 6 1414 421 248 130 15 chr9 108712488 108712619 -15363553 + B1F SINE Alu 1 146 -3 6 1414 455 233 8 0 chr9 108713696 108713825 -15362347 + (TG)n Simple_repeat Simple_repeat 2 131 0 6 1414 395 343 67 40 chr9 108715576 108715642 -15360530 + B4 SINE B4 12 184 -108 6 1414 730 184 72 22 chr9 108715642 108715781 -15360391 + B1_Mm SINE Alu 2 147 0 6 1414 395 343 67 40 chr9 108715781 108715801 -15360371 + B4 SINE B4 185 242 -50 6 1414 920 116 13 75 chr9 108718275 108718434 -15357738 + B1_Mur4 SINE Alu 1 149 -1 6 1414 207 0 0 0 chr9 108718437 108718460 -15357712 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1414 269 247 39 13 chr9 108718490 108718568 -15357604 + ID4 SINE ID 4 83 0 6 1414 279 259 74 122 chr9 108718812 108719041 -15357131 - L2 LINE L2 -1373 2046 1829 6 1414 575 187 103 24 chr9 108721018 108721144 -15355028 + B1_Mur1 SINE Alu 12 147 -2 6 1414 672 237 33 53 chr9 108721656 108721867 -15354305 + B4A SINE B4 1 165 0 6 1414 681 242 19 72 chr9 108721892 108722101 -15354071 + B3A SINE B2 1 198 0 6 1414 1011 240 5 0 chr9 108722115 108722319 -15353853 + B3 SINE B2 1 205 -11 6 1414 236 307 40 0 chr9 108722589 108722664 -15353508 - LTR83 LTR ERVL -354 426 349 6 1414 551 327 50 83 chr9 108723499 108723799 -15352373 - B4A SINE B4 0 292 3 6 1414 252 88 0 17 chr9 108723937 108723995 -15352177 - B2_Mm2 SINE B2 -1 194 138 6 1414 314 222 0 0 chr9 108723985 108724048 -15352124 - B3 SINE B2 -107 109 47 6 1414 1187 136 17 0 chr9 108724084 108724260 -15351912 - B2_Mm1t SINE B2 -14 179 1 6 1414 472 68 14 14 chr9 108724346 108724420 -15351752 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 6 1414 310 302 75 0 chr9 108724545 108724651 -15351521 - PB1D9 SINE Alu -6 114 1 6 1414 881 144 0 41 chr9 108724699 108724844 -15351328 + B1_Mur3 SINE Alu 1 139 -10 6 1414 279 0 0 0 chr9 108724845 108724876 -15351296 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1414 325 231 24 49 chr9 108724878 108724960 -15351212 - L1M5 LINE L1 -988 5158 5079 6 1414 779 115 49 0 chr9 108724966 108725088 -15351084 + B1_Mur4 SINE Alu 9 136 -14 6 1414 423 0 0 0 chr9 108725088 108725135 -15351037 + (CAAAA)n Simple_repeat Simple_repeat 5 51 0 6 1414 831 253 10 10 chr9 108725230 108725422 -15350750 + B3 SINE B2 24 215 -1 6 1414 294 312 35 44 chr9 108725470 108725584 -15350588 - PB1D10 SINE Alu -2 115 3 6 1414 565 243 37 0 chr9 108725584 108725645 -15350527 - ID SINE ID -140 84 19 6 1414 300 311 62 62 chr9 108725652 108725782 -15350390 - L1M5 LINE L1 -1898 4248 4119 6 1414 277 309 0 0 chr9 108725790 108725858 -15350314 - L2 LINE L2 -2083 1336 1269 6 1414 541 216 18 18 chr9 108725947 108726060 -15350112 - PB1D9 SINE Alu -2 118 6 6 1414 384 285 145 109 chr9 108726060 108726140 -15350032 - ID_B1 SINE B4 0 224 25 6 1414 412 286 33 16 chr9 108726352 108726473 -15349699 - RSINE1 SINE B4 -31 134 12 6 1414 307 256 16 24 chr9 108728535 108728659 -15347513 + G-rich Low_complexity Low_complexity 3 125 0 6 1414 240 197 45 0 chr9 108733301 108733367 -15342805 + CT-rich Low_complexity Low_complexity 2 70 0 6 1414 746 151 56 28 chr9 108733369 108733512 -15342660 - B1_Mus1 SINE Alu 0 148 2 6 1414 192 200 0 0 chr9 108738642 108738682 -15337490 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 6 1414 511 188 0 28 chr9 108741797 108741978 -15334194 + (TG)n Simple_repeat Simple_repeat 2 177 0 6 1414 495 0 0 0 chr9 108744403 108744458 -15331714 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1414 245 89 22 0 chr9 108746729 108746774 -15329398 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1414 297 0 0 0 chr9 108749589 108749622 -15326550 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1414 243 318 114 0 chr9 108749648 108749736 -15326436 - RSINE1 SINE B4 -51 114 17 6 1414 1187 49 0 0 chr9 108750276 108750411 -15325761 + B1_Mus1 SINE Alu 1 135 -13 6 1414 207 0 0 0 chr9 108750411 108750434 -15325738 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1414 1918 88 61 7 chr9 108751981 108752278 -15323894 + MT2B2 LTR ERVL 1 313 -271 7 1414 334 322 48 70 chr9 108752142 108752172 -15324000 + RLTR25A LTR ERVK 493 559 -544 7 1414 451 194 76 53 chr9 108752172 108752303 -15323869 - ORR1A2 LTR MaLR -193 134 1 7 1414 334 322 48 70 chr9 108752303 108752369 -15323803 + RLTR25A LTR ERVK 560 714 -389 7 1414 311 65 0 21 chr9 108752798 108752810 -15323362 + (TC)n Simple_repeat Simple_repeat 2 13 0 7 1414 1326 48 0 0 chr9 108752810 108752976 -15323196 + (TTC)n Simple_repeat Simple_repeat 3 168 0 7 1414 311 65 0 21 chr9 108752976 108753010 -15323162 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1414 647 127 76 0 chr9 108755799 108755917 -15320255 + B1_Mur4 SINE Alu 24 150 0 7 1414 1208 240 25 11 chr9 108761781 108762055 -15314117 + B4A SINE B4 1 278 -14 7 1414 228 35 0 0 chr9 108762060 108762089 -15314083 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1415 375 174 46 13 chr9 108814475 108814626 -15261546 + (CA)n Simple_repeat Simple_repeat 1 156 0 7 1415 185 277 182 56 chr9 108816180 108816306 -15259866 + L2a LINE L2 3280 3421 -5 7 1415 247 167 24 0 chr9 108817911 108817953 -15258219 - RLTR21 LTR ERVK 0 1572 1530 7 1415 1617 130 7 51 chr9 108818008 108818300 -15257872 - RLTR21 LTR ERVK -525 1047 769 7 1415 1785 139 22 41 chr9 108818300 108818538 -15257634 - RLTR21 LTR ERVK -1162 410 176 7 1415 1045 107 0 0 chr9 108818538 108818678 -15257494 + B1_Mus1 SINE Alu 1 140 -8 7 1415 291 85 0 0 chr9 108818678 108818725 -15257447 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1415 1785 139 22 41 chr9 108818725 108818800 -15257372 - RLTR21 LTR ERVK -1397 175 103 7 1415 1336 184 76 45 chr9 108818816 108819146 -15257026 + MYSERV-int LTR ERVK 6211 6550 0 7 1415 535 233 7 63 chr9 108819146 108819288 -15256884 + RLTR11B LTR ERVK 1 134 -319 7 1415 701 204 28 35 chr9 108819288 108819429 -15256743 + B3 SINE B2 1 131 -85 7 1415 279 0 0 0 chr9 108819429 108819460 -15256712 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 7 1415 468 0 0 0 chr9 108819460 108819512 -15256660 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 7 1415 512 303 0 88 chr9 108819512 108819528 -15256644 + B2_Mm2 SINE B2 130 144 -51 7 1415 348 226 0 38 chr9 108819514 108819620 -15256552 + RLTR11B LTR ERVK 137 238 -215 7 1415 328 192 52 52 chr9 108819624 108819701 -15256471 - RLTR21 LTR ERVK -1495 77 1 7 1415 1087 52 0 22 chr9 108820187 108820324 -15255848 + B1_Mus2 SINE Alu 2 135 -12 7 1415 198 0 0 0 chr9 108820333 108820355 -15255817 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1415 251 257 0 8 chr9 108820541 108820609 -15255563 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 7 1415 1223 61 0 0 chr9 108820651 108820798 -15255374 + B1_Mus2 SINE Alu 1 147 0 7 1415 295 264 35 35 chr9 108820826 108820940 -15255232 - PB1D10 SINE Alu -3 114 1 7 1415 503 223 88 32 chr9 108821059 108821184 -15254988 - B1_Mur1 SINE Alu 0 149 18 7 1415 555 242 67 120 chr9 108821213 108821438 -15254734 + B4 SINE B4 8 220 -72 7 1415 885 94 55 0 chr9 108821312 108821440 -15254732 + B1_Mur4 SINE Alu 12 146 -4 7 1415 234 136 0 43 chr9 108821540 108821586 -15254586 + RSINE1 SINE B4 82 125 -40 7 1415 375 119 0 0 chr9 108821624 108821691 -15254481 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 1415 342 0 0 0 chr9 108821691 108821729 -15254443 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1415 697 278 35 0 chr9 108821747 108821920 -15254252 + B3A SINE B2 3 181 -17 7 1415 415 267 82 108 chr9 108821933 108821970 -15254202 + ID_B1 SINE B4 73 197 -95 7 1415 715 198 0 0 chr9 108821970 108822086 -15254086 + B1_Mur1 SINE Alu 28 143 -6 7 1415 1035 196 33 23 chr9 108822124 108822338 -15253834 - B3 SINE B2 0 216 1 7 1415 578 157 21 48 chr9 108822369 108822459 -15253713 + RMER17C LTR ERVK 97 184 -226 7 1415 549 0 0 0 chr9 108822459 108822520 -15253652 + (TCCCC)n Simple_repeat Simple_repeat 2 62 0 7 1415 578 157 21 48 chr9 108822520 108822616 -15253556 + RMER17C LTR ERVK 185 278 -132 7 1415 283 268 69 48 chr9 108822662 108822807 -15253365 - Arthur1 DNA Tip100 -301 3646 3499 7 1415 397 305 128 5 chr9 108823388 108823599 -15252573 + MLT1D LTR MaLR 2 238 -267 7 1415 1132 227 94 7 chr9 108823702 108823977 -15252195 + Lx6 LINE L1 7026 7324 -136 7 1415 181 0 69 0 chr9 108823978 108824007 -15252165 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1415 459 313 21 4 chr9 108824230 108824356 -15251816 + PB1D10 SINE Alu 1 127 -20 7 1415 340 250 79 11 chr9 108824369 108824458 -15251714 + MLT-int LTR MaLR 7 101 -1634 7 1415 720 225 53 0 chr9 108824460 108824611 -15251561 + RSINE1 SINE B4 2 160 -5 7 1415 455 254 180 27 chr9 108824704 108824854 -15251318 + ID_B1 SINE B4 5 177 -47 7 1415 476 234 21 0 chr9 108824775 108824869 -15251303 + PB1D10 SINE Alu 16 111 -6 7 1415 680 195 23 8 chr9 108824958 108825087 -15251085 + B1_Mur2 SINE Alu 2 132 -17 7 1415 342 0 0 0 chr9 108825098 108825136 -15251036 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1415 396 0 0 0 chr9 108825136 108825179 -15250993 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1415 402 274 132 9 chr9 108825204 108825318 -15250854 + ID_B1 SINE B4 93 220 -4 7 1415 237 65 0 0 chr9 108825364 108825395 -15250777 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 7 1415 577 306 0 0 chr9 108825723 108825870 -15250302 + B3A SINE B2 1 147 -51 7 1415 810 185 0 23 chr9 108825870 108826047 -15250125 - Lx5 LINE L1 -35 7015 6843 7 1415 477 261 24 41 chr9 108826058 108826201 -15249971 + B1F2 SINE Alu 11 149 0 7 1415 23 0 0 0 chr9 108826215 108826238 -15249934 + AT_rich Low_complexity Low_complexity 1 23 0 7 1415 328 295 160 72 chr9 108826247 108826510 -15249662 + B4A SINE B4 1 286 -6 7 1415 534 239 140 14 chr9 108826795 108827016 -15249156 + L1MB4 LINE L1 5864 6112 -68 7 1415 328 250 16 0 chr9 108827151 108827279 -15248893 + (TA)n Simple_repeat Simple_repeat 2 131 0 7 1415 776 215 7 7 chr9 108827285 108827430 -15248742 - B1_Mur1 SINE Alu -2 147 3 7 1415 217 409 0 0 chr9 108827460 108827548 -15248624 - ID_B1 SINE B4 -48 176 89 7 1415 927 267 13 26 chr9 108827569 108827796 -15248376 - ID_B1 SINE B4 0 224 1 7 1415 356 248 63 18 chr9 108827812 108827923 -15248249 - PB1D7 SINE Alu -3 117 2 7 1415 650 288 77 11 chr9 108827923 108828183 -15247989 + L1MB4 LINE L1 5816 6092 -88 7 1415 247 297 99 0 chr9 108828254 108828355 -15247817 + PB1D10 SINE Alu 1 111 -6 7 1415 190 205 21 69 chr9 108828855 108829044 -15247128 + C-rich Low_complexity Low_complexity 1 180 0 7 1415 707 172 100 15 chr9 108829151 108829281 -15246891 - B1_Mur2 SINE Alu -6 143 3 7 1415 232 296 19 93 chr9 108829283 108829419 -15246753 - Lx8 LINE L1 -1 7472 7345 7 1415 1501 28 39 0 chr9 108829419 108829600 -15246572 - B2_Mm1a SINE B2 -4 189 2 7 1415 232 296 19 93 chr9 108829600 108829615 -15246557 - Lx8 LINE L1 -129 7344 7333 7 1415 459 0 0 0 chr9 108829615 108829666 -15246506 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1415 309 247 0 1 chr9 108829666 108829732 -15246440 - Lx8 LINE L1 -181 7463 7399 7 1415 842 163 42 7 chr9 108829770 108829912 -15246260 + B1_Mur2 SINE Alu 2 148 -1 7 1415 555 181 0 0 chr9 108829933 108830093 -15246079 + (TG)n Simple_repeat Simple_repeat 2 161 0 7 1415 234 180 0 0 chr9 108830113 108830174 -15245998 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1415 470 252 0 0 chr9 108830186 108830289 -15245883 - Lx8 LINE L1 -363 7110 7008 7 1415 664 161 0 33 chr9 108830312 108830434 -15245738 - B1_Mus2 SINE Alu -12 135 18 7 1415 414 281 19 103 chr9 108830434 108830526 -15245646 - ID_B1 SINE B4 -12 212 17 7 1415 791 273 82 22 chr9 108830533 108830803 -15245369 - Lx8 LINE L1 -479 6994 6709 7 1415 210 143 0 0 chr9 108830805 108830840 -15245332 + (TATG)n Simple_repeat Simple_repeat 2 36 0 7 1415 775 161 88 0 chr9 108830871 108831008 -15245164 - B1_Mur3 SINE Alu 0 149 1 7 1415 1095 215 9 0 chr9 108831033 108831247 -15244925 - B3 SINE B2 0 216 1 7 1415 1041 113 31 0 chr9 108831365 108831524 -15244648 - B2_Mm2 SINE B2 -5 190 27 7 1415 358 275 12 0 chr9 108831547 108831627 -15244545 - B3 SINE B2 -44 172 92 7 1415 836 147 1 26 chr9 108831673 108831848 -15244324 + B3 SINE B2 1 170 -23 7 1415 211 314 70 14 chr9 108831868 108831939 -15244233 - L2 LINE L2 -800 2619 2545 7 1415 695 157 118 15 chr9 108831941 108832077 -15244095 - B1_Mur4 SINE Alu 0 150 1 7 1415 550 295 0 14 chr9 108832079 108832220 -15243952 - B1_Mur1 SINE Alu -6 143 5 7 1415 501 231 87 35 chr9 108832278 108832431 -15243741 + B3A SINE B2 36 195 0 7 1415 600 232 8 0 chr9 108833631 108833756 -15242416 + B1_Mur1 SINE Alu 1 126 -23 7 1415 445 104 13 13 chr9 108833762 108833840 -15242332 + (TCTCCC)n Simple_repeat Simple_repeat 6 83 0 7 1415 882 200 0 0 chr9 108833855 108833995 -15242177 - B1_Mur2 SINE Alu -9 140 1 7 1415 1440 88 10 5 chr9 108834117 108834311 -15241861 - B2_Mm2 SINE B2 0 195 1 7 1415 576 276 0 7 chr9 108834354 108834489 -15241683 - RSINE1 SINE B4 -29 136 3 7 1415 258 56 0 0 chr9 108834501 108834537 -15241635 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 7 1415 702 264 76 5 chr9 108834545 108834743 -15241429 + B3 SINE B2 5 216 0 7 1415 1391 65 10 52 chr9 108834755 108834949 -15241223 - B2_Mm1t SINE B2 -4 189 4 7 1415 908 169 214 0 chr9 108834979 108835157 -15241015 + B3 SINE B2 1 216 0 7 1415 1134 75 7 7 chr9 108835274 108835421 -15240751 + B1_Mm SINE Alu 1 147 0 7 1415 276 30 0 0 chr9 108835667 108835700 -15240472 + (TTA)n Simple_repeat Simple_repeat 3 35 0 7 1415 436 319 104 35 chr9 108835747 108835820 -15240352 + L1MC3 LINE L1 7485 7577 -208 7 1415 189 0 0 0 chr9 108835820 108835841 -15240331 + (CAA)n Simple_repeat Simple_repeat 2 22 0 7 1415 436 319 104 35 chr9 108835841 108836027 -15240145 + L1MC3 LINE L1 7578 7761 -24 7 1415 429 333 13 26 chr9 108836027 108836181 -15239991 + RSINE1 SINE B4 12 163 -2 7 1415 815 278 27 14 chr9 108836254 108836473 -15239699 + ID_B1 SINE B4 2 223 -1 7 1415 465 267 87 22 chr9 108836506 108836644 -15239528 - B1_Mur2 SINE Alu -1 148 2 7 1415 204 40 0 0 chr9 108836995 108837020 -15239152 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1415 4816 70 8 9 chr9 108837028 108837660 -15238512 - L1_Mus3 LINE L1 -1 6637 6007 7 1415 610 83 0 0 chr9 108837660 108837744 -15238428 - B1_Mur4 SINE Alu -7 143 60 8 1415 22 35 0 0 chr9 108837996 108838025 -15238147 + AT_rich Low_complexity Low_complexity 1 29 0 8 1415 406 261 0 67 chr9 108838152 108838271 -15237901 - ID_B1 SINE B4 0 224 114 8 1415 312 239 0 14 chr9 108839542 108839614 -15236558 + B4A SINE B4 2 72 -220 8 1415 839 242 55 35 chr9 108839681 108839774 -15236398 - B3 SINE B2 -10 206 112 8 1415 1464 46 0 0 chr9 108839774 108839933 -15236239 + B2_Mm1t SINE B2 2 160 -33 8 1415 222 37 0 0 chr9 108839933 108839960 -15236212 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1415 1464 46 0 0 chr9 108839960 108839973 -15236199 + B2_Mm1t SINE B2 161 173 -20 8 1415 839 242 55 35 chr9 108839973 108840080 -15236092 - B3 SINE B2 -105 111 2 8 1415 180 111 0 0 chr9 108840105 108840132 -15236040 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1415 947 162 0 0 chr9 108840132 108840280 -15235892 - B1_Mus1 SINE Alu 0 148 1 8 1415 747 283 0 0 chr9 108840544 108840724 -15235448 + B3A SINE B2 16 195 -3 8 1415 863 185 101 26 chr9 108840737 108840926 -15235246 + B3 SINE B2 7 209 -7 8 1415 761 184 19 58 chr9 108841045 108841201 -15234971 - B1_Mur4 SINE Alu 0 150 1 8 1415 395 314 39 51 chr9 108841485 108841663 -15234509 + B3A SINE B2 1 176 -22 8 1415 378 281 8 34 chr9 108841814 108841932 -15234240 + ID_B1 SINE B4 98 212 -12 8 1415 228 114 182 0 chr9 108841930 108841974 -15234198 + PB1D9 SINE Alu 60 111 -9 8 1415 522 193 26 26 chr9 108842027 108842144 -15234028 + B3A SINE B2 6 122 -76 8 1415 1241 94 66 11 chr9 108842238 108842421 -15233751 - B2_Mm2 SINE B2 0 195 3 8 1415 1102 126 15 45 chr9 108842422 108842621 -15233551 - B2_Mm1t SINE B2 0 193 1 8 1415 327 367 9 0 chr9 108842760 108842869 -15233303 + PB1 SINE Alu 1 110 -17 8 1415 274 137 78 0 chr9 108842935 108842986 -15233186 - B1_Mur1 SINE Alu -1 148 94 8 1415 210 37 0 0 chr9 108843132 108843159 -15233013 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 8 1415 547 200 28 9 chr9 108843160 108843266 -15232906 - PB1D10 SINE Alu -9 108 1 8 1415 747 242 9 50 chr9 108843406 108843572 -15232600 + B3 SINE B2 2 168 -48 8 1415 1146 95 0 0 chr9 108843572 108843719 -15232453 + B1_Mus2 SINE Alu 1 147 0 8 1415 747 242 9 50 chr9 108843719 108843770 -15232402 + B3 SINE B2 169 210 -6 8 1415 218 214 36 0 chr9 108843789 108843845 -15232327 + B1_Mur4 SINE Alu 50 107 -43 8 1415 531 290 157 50 chr9 108844357 108844454 -15231718 - MTE2a LTR MaLR -88 291 198 8 1415 207 0 0 0 chr9 108844454 108844477 -15231695 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 8 1415 531 290 157 50 chr9 108844477 108844640 -15231532 - MTE2a LTR MaLR -182 197 4 8 1415 530 275 85 35 chr9 108845858 108846058 -15230114 - B3 SINE B2 -5 211 2 8 1415 395 316 75 0 chr9 108846435 108846568 -15229604 - RSINE1 SINE B4 -12 153 11 8 1415 480 319 14 0 chr9 108846573 108846711 -15229461 - B1F SINE Alu -6 143 4 8 1415 538 294 13 33 chr9 108848074 108848091 -15228081 - RSINE1 SINE B4 -4 161 145 8 1415 450 0 0 0 chr9 108848091 108848141 -15228031 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1415 538 294 13 33 chr9 108848141 108848274 -15227898 - RSINE1 SINE B4 -21 144 14 8 1415 838 255 10 25 chr9 108848305 108848506 -15227666 - B3A SINE B2 0 198 1 8 1415 865 219 73 0 chr9 108848587 108848779 -15227393 - B3 SINE B2 -6 210 5 8 1415 503 319 7 0 chr9 108850088 108850223 -15225949 + ID_B1 SINE B4 88 223 -1 8 1415 655 192 0 31 chr9 108850228 108850357 -15225815 + B1F2 SINE Alu 25 149 0 8 1415 1215 48 0 20 chr9 108852758 108852908 -15223264 - B1_Mus2 SINE Alu 0 147 1 8 1415 2122 56 7 4 chr9 108852911 108853182 -15222990 - L1_Mus2 LINE L1 0 6566 6295 8 1415 1161 66 162 0 chr9 108853892 108854059 -15222113 - B2_Mm2 SINE B2 0 195 2 8 1415 225 0 0 0 chr9 108856963 108856988 -15219184 + (CCA)n Simple_repeat Simple_repeat 2 26 0 8 1415 405 58 0 0 chr9 108860955 108861007 -15215165 + (TCC)n Simple_repeat Simple_repeat 3 54 0 8 1415 389 298 0 46 chr9 108865445 108865554 -15210618 + PB1D10 SINE Alu 2 105 -12 8 1415 687 57 0 0 chr9 108865554 108865642 -15210530 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 8 1415 977 115 0 14 chr9 108866854 108866995 -15209177 - B1_Mur3 SINE Alu -8 141 3 8 1415 21 0 0 0 chr9 108874163 108874184 -15201988 + GC_rich Low_complexity Low_complexity 1 21 0 8 1415 1150 161 42 0 chr9 108878893 108879085 -15197087 - B3 SINE B2 -14 202 3 8 1415 240 163 0 0 chr9 108880986 108881029 -15195143 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1415 561 281 7 7 chr9 108882080 108882216 -15193956 - ID_B1 SINE B4 -7 217 82 8 1415 789 184 15 0 chr9 108883438 108883574 -15192598 - B1_Mur1 SINE Alu -8 141 4 8 1415 561 169 213 24 chr9 108883617 108883732 -15192440 - B3 SINE B2 -19 197 52 8 1415 1451 91 16 0 chr9 108883732 108883919 -15192253 + B2_Mm2 SINE B2 1 190 -5 8 1415 1444 84 26 0 chr9 108883928 108884118 -15192054 + B2_Mm2 SINE B2 1 195 0 8 1415 561 169 213 24 chr9 108884118 108884156 -15192016 - B3 SINE B2 -175 41 4 8 1415 203 88 29 0 chr9 108885166 108885200 -15190972 + (TCC)n Simple_repeat Simple_repeat 2 36 0 8 1415 220 328 17 33 chr9 108887540 108887660 -15188512 + CT-rich Low_complexity Low_complexity 4 121 0 8 1415 394 250 69 10 chr9 108887700 108887801 -15188371 - PB1D7 SINE Alu -8 112 6 8 1415 624 62 0 0 chr9 108887843 108887924 -15188248 + (TCC)n Simple_repeat Simple_repeat 3 83 0 8 1415 783 92 165 8 chr9 108887924 108888045 -15188127 - B1_Mus1 SINE Alu -7 141 2 8 1415 310 259 0 125 chr9 108889017 108889039 -15187133 - PB1D9 SINE Alu 0 120 109 8 1415 1018 154 65 11 chr9 108889039 108889223 -15186949 + B2_Mm2 SINE B2 2 195 0 8 1415 310 259 0 125 chr9 108889223 108889328 -15186844 - PB1D9 SINE Alu -12 108 9 8 1415 423 0 0 0 chr9 108889460 108889507 -15186665 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1415 188 370 0 27 chr9 108892879 108892954 -15183218 - MIRb SINE MIR -74 194 122 8 1415 516 222 115 109 chr9 108893001 108893193 -15182979 + ID_B1 SINE B4 32 224 0 8 1415 746 218 7 13 chr9 108895628 108895777 -15180395 + B1_Mur2 SINE Alu 1 148 -1 8 1415 460 152 126 39 chr9 108895976 108896079 -15180093 + B1_Mus2 SINE Alu 9 120 -27 8 1415 377 204 80 44 chr9 108895979 108896092 -15180080 + MT2B LTR ERVL 176 292 -309 8 1415 1017 210 9 53 chr9 108896714 108896897 -15179275 - B3 SINE B2 0 216 37 8 1415 998 115 0 13 chr9 108896897 108897047 -15179125 - B1_Mur3 SINE Alu -1 148 1 8 1415 1017 210 9 53 chr9 108897047 108897089 -15179083 - B3 SINE B2 -180 36 1 8 1415 2667 117 5 5 chr9 108897885 108898296 -15177876 + MTC LTR MaLR 2 412 -9 8 1415 252 0 0 0 chr9 108899011 108899039 -15177133 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1415 715 144 0 17 chr9 108899041 108899161 -15177011 - B1_Mur4 SINE Alu -31 119 2 8 1415 229 323 75 19 chr9 108899551 108899712 -15176460 - RMER15 LTR ERVL -4 571 402 8 1415 1222 61 0 7 chr9 108899978 108900127 -15176045 - B1_Mus1 SINE Alu 0 148 1 8 1415 1385 244 58 22 chr9 108900524 108900885 -15175287 - MTE2b LTR MaLR -5 374 1 8 1415 292 208 62 45 chr9 108901419 108901525 -15174647 - B1_Mus2 SINE Alu -33 116 1 8 1415 840 188 14 0 chr9 108902042 108902186 -15173986 + B1_Mur2 SINE Alu 2 147 -2 8 1415 737 269 63 84 chr9 108902199 108902526 -15173646 - MTE2a LTR MaLR -16 403 82 8 1415 768 180 231 6 chr9 108902526 108902699 -15173473 + B3 SINE B2 3 214 -2 8 1415 564 278 74 141 chr9 108902699 108902818 -15173354 - MTE2a LTR MaLR -302 117 1 8 1415 269 254 0 16 chr9 108903114 108903178 -15172994 - MIRc SINE MIR -104 164 102 8 1415 453 254 49 8 chr9 108903225 108903348 -15172824 + ID_B1 SINE B4 91 218 -6 8 1415 229 346 59 37 chr9 108903238 108903373 -15172799 - YREP_Mm Unknown Unknown -1518 294 157 8 1415 635 233 0 15 chr9 108903992 108904123 -15172049 - ID_B1 SINE B4 -3 221 93 8 1415 332 173 248 16 chr9 108904674 108904803 -15171369 - MER68 LTR ERVL -77 486 328 8 1415 1156 161 53 5 chr9 108905124 108905330 -15170842 - B3 SINE B2 0 216 1 8 1415 499 244 196 22 chr9 108905357 108905541 -15170631 - B3 SINE B2 0 216 1 8 1415 210 171 0 0 chr9 108905557 108905598 -15170574 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 8 1415 547 165 173 45 chr9 108905600 108905733 -15170439 - B1_Mur4 SINE Alu 0 150 1 8 1415 288 0 0 0 chr9 108905756 108905788 -15170384 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1415 381 294 37 0 chr9 108905829 108905938 -15170234 - B3A SINE B2 -80 118 6 8 1415 270 0 0 0 chr9 108906093 108906123 -15170049 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 8 1415 213 233 33 0 chr9 108906184 108906244 -15169928 + ID SINE ID 16 77 -147 8 1415 1105 105 111 0 chr9 108906266 108906428 -15169744 + B2_Mm2 SINE B2 2 181 -14 8 1415 261 204 233 72 chr9 108906428 108906595 -15169577 + B2_Mm2 SINE B2 2 195 0 8 1415 642 155 8 8 chr9 108906634 108906751 -15169421 + B1_Mur1 SINE Alu 32 148 -1 8 1415 862 211 74 40 chr9 108907059 108907212 -15168960 + B3 SINE B2 8 153 -63 8 1415 462 79 0 0 chr9 108907212 108907275 -15168897 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1415 862 211 74 40 chr9 108907275 108907323 -15168849 + B3 SINE B2 154 216 0 8 1415 711 273 93 0 chr9 108908311 108908516 -15167656 + ID_B1 SINE B4 1 224 0 8 1415 210 71 0 0 chr9 108908678 108908706 -15167466 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1415 649 244 7 0 chr9 108908747 108908882 -15167290 + B1F SINE Alu 2 137 -12 8 1415 295 286 49 0 chr9 108910637 108910749 -15165423 - LTR84b LTR ERVL -333 424 312 8 1415 413 293 126 0 chr9 108911039 108911206 -15164966 - MER58A DNA MER1_type -28 196 9 8 1415 1202 54 7 0 chr9 108913494 108913641 -15162531 - B1_Mus1 SINE Alu 0 148 1 9 1415 256 284 199 12 chr9 108913905 108914076 -15162096 - RLTR33 LTR ERVK -45 633 431 9 1415 23 0 0 0 chr9 108914414 108914437 -15161735 + AT_rich Low_complexity Low_complexity 1 23 0 9 1415 959 180 0 23 chr9 108914437 108914613 -15161559 + B3 SINE B2 38 209 -7 9 1415 226 293 92 13 chr9 108914928 108915004 -15161168 - ID2 SINE ID -1 82 1 9 1415 441 248 34 47 chr9 108915256 108915404 -15160768 - B1F SINE Alu -3 146 1 9 1415 238 245 16 0 chr9 108915437 108915514 -15160658 - L1M LINE L1 -847 5333 5256 9 1415 270 324 12 131 chr9 108916678 108916702 -15159470 + MT2B LTR ERVL 147 262 -336 9 1415 532 202 28 0 chr9 108916702 108916811 -15159361 + PB1D9 SINE Alu 9 120 0 9 1415 838 159 325 0 chr9 108916814 108916977 -15159195 + B3 SINE B2 1 216 0 9 1415 270 324 12 131 chr9 108916977 108917000 -15159172 + MT2B LTR ERVL 266 287 -314 9 1415 348 200 235 0 chr9 108916978 108917063 -15159109 + PB1D9 SINE Alu 9 113 -7 9 1415 521 208 70 7 chr9 108917187 108917332 -15158840 + L1MA5 LINE L1 5824 5998 -293 9 1415 450 344 101 44 chr9 108917547 108917863 -15158309 - MLT1E LTR MaLR -20 633 300 9 1415 189 121 0 0 chr9 108918056 108918089 -15158083 + (C)n Simple_repeat Simple_repeat 1 33 0 9 1415 1471 69 11 5 chr9 108918455 108918645 -15157527 - B2_Mm2 SINE B2 -3 192 2 9 1415 1326 98 11 0 chr9 108918649 108918833 -15157339 - B2_Mm1t SINE B2 -6 187 2 9 1415 28 0 0 0 chr9 108918833 108918861 -15157311 + AT_rich Low_complexity Low_complexity 1 28 0 9 1415 492 304 87 10 chr9 108918869 108919065 -15157107 + ID_B1 SINE B4 12 222 -2 9 1415 324 118 0 0 chr9 108920052 108920103 -15156069 - B1_Mus2 SINE Alu -14 133 83 9 1415 702 108 9 18 chr9 108920101 108920214 -15155958 + B1_Mur4 SINE Alu 37 148 -2 9 1415 207 0 0 0 chr9 108920221 108920244 -15155928 + (TAA)n Simple_repeat Simple_repeat 2 24 0 9 1415 362 0 69 0 chr9 108920439 108920497 -15155675 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1416 200 98 0 68 chr9 108920924 108920946 -15155226 + T-rich Low_complexity Low_complexity 24 45 0 9 1416 855 130 13 64 chr9 108920946 108921102 -15155070 - B1_Mur1 SINE Alu 0 149 2 9 1416 200 98 0 68 chr9 108921102 108921123 -15155049 + T-rich Low_complexity Low_complexity 5 23 0 9 1416 748 85 0 0 chr9 108921123 108921229 -15154943 - B1_Mus2 SINE Alu 0 147 42 9 1416 245 178 112 56 chr9 108921166 108921273 -15154899 - RLTR25B LTR ERVK -519 509 397 9 1416 495 182 76 0 chr9 108921276 108921408 -15154764 + (CCTG)n Simple_repeat Simple_repeat 2 143 0 9 1416 396 247 0 0 chr9 108921412 108921582 -15154590 + CT-rich Low_complexity Low_complexity 2 171 0 9 1416 267 267 0 0 chr9 108921596 108921742 -15154430 + CT-rich Low_complexity Low_complexity 2 147 0 9 1416 369 269 0 0 chr9 108921756 108922100 -15154072 + CT-rich Low_complexity Low_complexity 1 344 0 9 1416 593 67 0 126 chr9 108922103 108922309 -15153863 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 9 1416 414 247 0 0 chr9 108922332 108922510 -15153662 + CT-rich Low_complexity Low_complexity 2 179 0 9 1416 291 129 129 0 chr9 108922540 108922680 -15153492 + (CCTG)n Simple_repeat Simple_repeat 2 159 0 9 1416 504 95 0 127 chr9 108922711 108923030 -15153142 + (TCTCTG)n Simple_repeat Simple_repeat 1 278 0 9 1416 754 144 0 91 chr9 108923034 108923331 -15152841 + (TCTCTG)n Simple_repeat Simple_repeat 1 270 0 9 1416 360 263 0 0 chr9 108923332 108923634 -15152538 + CT-rich Low_complexity Low_complexity 1 302 0 9 1416 483 144 0 65 chr9 108923685 108923871 -15152301 + CT-rich Low_complexity Low_complexity 3 176 0 9 1416 268 133 86 33 chr9 108923873 108923884 -15152288 - B4A SINE B4 -77 147 112 9 1416 332 59 78 0 chr9 108923884 108923935 -15152237 - B1_Mus1 SINE Alu -93 55 1 9 1416 311 222 40 34 chr9 108923959 108924108 -15152064 + (TG)n Simple_repeat Simple_repeat 1 150 0 9 1416 711 278 108 19 chr9 108924121 108924389 -15151783 - B4A SINE B4 0 292 1 9 1416 789 272 98 8 chr9 108924954 108925210 -15150962 - B4A SINE B4 0 292 14 9 1416 273 283 0 29 chr9 108925214 108925316 -15150856 - B3 SINE B2 0 216 118 9 1416 399 274 45 58 chr9 108925309 108925464 -15150708 - MLT1-int LTR MaLR -955 416 264 9 1416 399 272 9 17 chr9 108925467 108925583 -15150589 - PB1D10 SINE Alu 0 117 3 9 1416 246 347 29 78 chr9 108925637 108925685 -15150487 - B3A SINE B2 0 198 3 9 1416 605 272 51 0 chr9 108925685 108925843 -15150329 - B4A SINE B4 -124 168 3 9 1416 336 294 247 0 chr9 108925851 108926021 -15150151 - MLT1-int LTR MaLR -1156 215 4 9 1416 387 0 0 0 chr9 108926114 108926157 -15150015 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1416 495 276 81 0 chr9 108926159 108926282 -15149890 - B3A SINE B2 -20 178 46 9 1416 468 0 0 0 chr9 108926514 108926566 -15149606 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1416 1120 55 0 0 chr9 108926566 108926711 -15149461 - B2_Mm2 SINE B2 -50 145 1 9 1416 211 283 0 0 chr9 108926803 108926849 -15149323 + B4A SINE B4 90 135 -157 9 1416 521 200 150 0 chr9 108926808 108926928 -15149244 + B1_Mus1 SINE Alu 11 148 0 9 1416 488 268 159 0 chr9 108926944 108927082 -15149090 + RSINE1 SINE B4 4 163 -2 9 1416 897 164 7 0 chr9 108927125 108927271 -15148901 + B1_Mm SINE Alu 1 147 0 9 1416 1098 224 91 47 chr9 108928475 108928751 -15147421 + B4 SINE B4 3 290 -2 9 1416 305 161 18 0 chr9 108929873 108929929 -15146243 - ORR1B2 LTR MaLR 0 367 311 9 1416 378 262 27 72 chr9 108930586 108930653 -15145519 + B1F SINE Alu 10 79 -70 9 1416 1142 114 74 0 chr9 108930653 108930829 -15145343 + B2_Mm2 SINE B2 2 190 -5 9 1416 378 262 27 72 chr9 108930829 108930872 -15145300 + B1F SINE Alu 80 115 -34 9 1416 717 246 119 11 chr9 108931896 108932081 -15144091 + ID_B1 SINE B4 14 218 -6 9 1416 288 0 0 0 chr9 108934788 108934820 -15141352 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1416 211 250 13 53 chr9 108934843 108934866 -15141306 + B4 SINE B4 67 86 -206 9 1416 264 196 18 0 chr9 108934866 108934922 -15141250 + B1F2 SINE Alu 1 57 -92 9 1416 1764 161 118 9 chr9 108934936 108935275 -15140897 - ORR1C1 LTR MaLR -2 376 1 9 1416 1054 167 75 10 chr9 108935319 108935519 -15140653 - B3 SINE B2 -1 215 3 9 1416 448 165 97 0 chr9 108935996 108936099 -15140073 + B3A SINE B2 1 113 -85 9 1416 279 295 61 69 chr9 108936127 108936141 -15140031 + B4 SINE B4 77 150 -142 9 1416 505 222 28 9 chr9 108936141 108936250 -15139922 + B1_Mus1 SINE Alu 2 112 -36 9 1416 2743 37 3 6 chr9 108937119 108937470 -15138702 + L1_Mus2 LINE L1 5809 6158 -408 9 1416 14420 73 4 3 chr9 108937471 108940249 -15135923 + L1_Mus1 LINE L1 3785 6567 0 9 1416 1489 46 31 5 chr9 108940258 108940454 -15135718 + L1_Mus2 LINE L1 6144 6344 -222 9 1416 259 276 0 0 chr9 108941021 108941079 -15135093 + C-rich Low_complexity Low_complexity 2 59 0 9 1416 207 156 0 0 chr9 108941172 108941204 -15134968 + (TCCG)n Simple_repeat Simple_repeat 2 33 0 9 1416 180 111 0 0 chr9 108941242 108941269 -15134903 + (CTG)n Simple_repeat Simple_repeat 3 29 0 9 1416 706 224 0 7 chr9 108942006 108942141 -15134031 + B1_Mur1 SINE Alu 11 144 -5 9 1416 378 0 0 0 chr9 108943881 108943923 -15132249 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1416 250 226 75 11 chr9 108944166 108944260 -15131912 - L1ME5 LINE L1 -155 6039 5940 9 1416 472 204 39 10 chr9 108944521 108944625 -15131547 - PB1D9 SINE Alu -13 107 1 9 1416 255 103 0 0 chr9 108944709 108944748 -15131424 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1416 10027 39 6 4 chr9 108944808 108946813 -15129359 - L1Md_F3 LINE L1 -2 6582 4575 9 1416 860 139 28 0 chr9 108946815 108946959 -15129213 - B1_Mus1 SINE Alu 0 148 1 9 1416 737 295 58 0 chr9 108946970 108947160 -15129012 - ID_B1 SINE B4 -9 215 15 9 1416 991 186 75 0 chr9 108947186 108947385 -15128787 - B3 SINE B2 -1 215 2 9 1416 809 150 7 0 chr9 108947390 108947537 -15128635 + CT-rich Low_complexity Low_complexity 1 148 0 9 1416 429 20 0 0 chr9 108947743 108947793 -15128379 + (GA)n Simple_repeat Simple_repeat 1 50 0 9 1416 924 169 16 16 chr9 108947908 108948100 -15128072 + B2_Mm2 SINE B2 1 192 -3 9 1416 740 262 8 86 chr9 108948122 108948356 -15127816 - B3 SINE B2 0 216 1 9 1416 1301 67 41 0 chr9 108948373 108948567 -15127605 - L1_Mus3 LINE L1 -1 6637 6436 9 1416 25 0 0 0 chr9 108948571 108948596 -15127576 + AT_rich Low_complexity Low_complexity 1 25 0 9 1416 1220 65 53 0 chr9 108948683 108948853 -15127319 - B2_Mm1t SINE B2 -14 179 1 9 1416 620 207 82 0 chr9 108948857 108948945 -15127227 - B1_Mur2 SINE Alu -1 148 59 9 1416 198 0 0 0 chr9 108948945 108948967 -15127205 + (CCTG)n Simple_repeat Simple_repeat 2 23 0 9 1416 620 207 82 0 chr9 108948967 108949013 -15127159 - B1_Mur2 SINE Alu -91 58 4 9 1416 1438 31 15 40 chr9 108949363 108949563 -15126609 - B2_Mm2 SINE B2 0 195 1 9 1416 7188 43 4 0 chr9 108949567 108950467 -15125705 - L1Md_F2 LINE L1 -2 6580 5677 9 1416 227 266 0 72 chr9 108950479 108950548 -15125624 - MLT-int LTR MaLR -1142 593 530 9 1416 538 259 33 33 chr9 108950824 108950976 -15125196 - RSINE1 SINE B4 0 165 14 9 1416 682 193 56 28 chr9 108951281 108951425 -15124747 - B1_Mur2 SINE Alu 0 149 2 9 1416 1102 125 54 0 chr9 108951883 108952067 -15124105 + B2_Mm2 SINE B2 1 194 -1 9 1416 444 219 149 45 chr9 108952080 108952214 -15123958 + B1_Mur2 SINE Alu 2 149 0 9 1416 534 253 32 112 chr9 108952300 108952487 -15123685 + B3 SINE B2 1 172 -44 9 1416 1497 193 13 7 chr9 108952525 108952833 -15123339 - RLTR16 LTR ERVK -188 317 8 9 1416 258 350 98 24 chr9 108952839 108952855 -15123317 - B1F1 SINE Alu -17 132 1 9 1416 380 308 75 0 chr9 108952855 108952962 -15123210 - ID_B1 SINE B4 -28 196 82 9 1416 263 304 87 0 chr9 108952974 108953066 -15123106 - PB1D7 SINE Alu -15 105 6 9 1416 361 257 38 9 chr9 108953161 108953267 -15122905 - PB1D10 SINE Alu -1 116 8 1 1416 233 329 26 0 chr9 108953213 108953289 -15122883 - B4 SINE B4 -146 146 69 1 1416 247 182 45 0 chr9 108953342 108953408 -15122764 + CT-rich Low_complexity Low_complexity 1 69 0 1 1416 317 256 49 0 chr9 108953408 108953490 -15122682 - PB1D10 SINE Alu -13 104 19 1 1416 264 299 81 15 chr9 108953610 108953746 -15122426 - L1M3 LINE L1 -3315 2825 2681 1 1416 529 181 138 0 chr9 108954624 108954740 -15121432 - ID_B1 SINE B4 -3 221 90 1 1416 577 241 22 7 chr9 108955051 108955189 -15120983 - B1F SINE Alu -2 147 8 1 1416 556 117 27 64 chr9 108956307 108956417 -15119755 - B1F2 SINE Alu 0 149 44 1 1416 443 213 29 59 chr9 108956695 108956845 -15119327 - B1F SINE Alu 0 149 7 1 1416 21 0 0 0 chr9 108956845 108956866 -15119306 + AT_rich Low_complexity Low_complexity 1 21 0 1 1416 216 0 0 0 chr9 108957596 108957620 -15118552 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1416 1169 54 0 0 chr9 108963769 108963916 -15112256 - B1_Mus2 SINE Alu 0 147 1 1 1416 1523 37 16 0 chr9 108964334 108964523 -15111649 + B2_Mm1a SINE B2 2 193 0 1 1416 213 119 0 0 chr9 108964707 108964749 -15111423 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1416 732 171 30 8 chr9 108965316 108965488 -15110684 - B3 SINE B2 0 198 15 1 1416 637 220 35 0 chr9 108965669 108965810 -15110362 + B1_Mus2 SINE Alu 2 147 0 1 1416 472 213 37 0 chr9 108966479 108966587 -15109585 - PB1D9 SINE Alu -7 113 2 1 1416 766 189 167 0 chr9 108966782 108966962 -15109210 - B3 SINE B2 -6 210 1 1 1416 853 141 0 22 chr9 108967081 108967219 -15108953 + B1_Mur3 SINE Alu 1 135 -14 1 1416 210 91 0 0 chr9 108967223 108967256 -15108916 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 1 1416 213 39 0 0 chr9 108968652 108968678 -15107494 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 1 1416 394 202 56 0 chr9 108968682 108968771 -15107401 - PB1D10 SINE Alu -6 111 18 1 1416 180 176 0 0 chr9 108968933 108968967 -15107205 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 1 1416 216 0 0 0 chr9 108969047 108969071 -15107101 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 1416 1092 63 0 14 chr9 108969073 108969217 -15106955 - B1_Mus2 SINE Alu -5 142 1 1 1416 636 268 0 0 chr9 108969244 108969371 -15106801 - RSINE1 SINE B4 -36 129 3 1 1416 212 293 39 26 chr9 108969914 108969991 -15106181 - MIR SINE MIR -147 115 38 1 1416 263 289 72 0 chr9 108970159 108970256 -15105916 + MLT1F LTR MaLR 443 546 -2 1 1416 705 282 26 11 chr9 108970672 108970862 -15105310 + B3A SINE B2 1 189 -6 1 1416 566 244 108 52 chr9 108971323 108971535 -15104637 + MTEb LTR MaLR 105 328 -51 1 1416 461 186 179 41 chr9 108971967 108972090 -15104082 + B1_Mur2 SINE Alu 9 148 -1 1 1416 502 294 6 29 chr9 108972731 108972906 -15103266 + ID_B1 SINE B4 54 224 0 1 1416 365 241 0 37 chr9 108973272 108973354 -15102818 - PB1D10 SINE Alu -1 116 38 1 1416 1318 88 10 20 chr9 108973419 108973615 -15102557 + B2_Mm2 SINE B2 2 195 0 1 1416 610 191 122 0 chr9 108974016 108974147 -15102025 - B1_Mur1 SINE Alu -1 148 2 1 1416 699 265 54 20 chr9 108974649 108974853 -15101319 + B3 SINE B2 1 211 -5 1 1416 245 312 0 94 chr9 108974987 108975072 -15101100 + ID4_ SINE ID 2 78 -5 1 1416 376 292 9 0 chr9 108975276 108975389 -15100783 + PB1D10 SINE Alu 2 115 -2 1 1416 412 196 69 40 chr9 108977620 108977721 -15098451 - B3 SINE B2 -7 209 106 1 1416 276 197 84 0 chr9 108977831 108977902 -15098270 - B1F SINE Alu -57 92 16 1 1416 180 0 26 79 chr9 108977902 108977940 -15098232 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1 1416 271 322 35 0 chr9 108977941 108978028 -15098144 - ID_B1 SINE B4 -65 159 74 1 1416 751 192 221 0 chr9 108978237 108978409 -15097763 - B3 SINE B2 -6 210 1 1 1416 261 200 0 0 chr9 108978418 108978476 -15097696 - B1F SINE Alu -43 74 17 1 1416 348 319 36 7 chr9 108978477 108978616 -15097556 + B1F SINE Alu 1 143 -6 1 1416 312 238 0 0 chr9 108978820 108978883 -15097289 + B4A SINE B4 87 149 -143 1 1416 1134 75 0 0 chr9 108978903 108979050 -15097122 - B1_Mus2 SINE Alu 0 147 1 1 1416 242 269 0 15 chr9 108979291 108979359 -15096813 - PB1D10 SINE Alu -24 93 27 1 1416 520 100 306 9 chr9 108979506 108979617 -15096555 + B1_Mur2 SINE Alu 5 148 -1 1 1416 735 134 75 0 chr9 108979752 108979886 -15096286 + URR1A DNA MER1_type 79 222 -4 1 1416 301 247 94 88 chr9 108979886 108979912 -15096260 - CYRA11_Mm Unknown Y-chromosome -298 319 159 1 1416 1266 97 38 0 chr9 108979914 108980099 -15096073 - B2_Mm2 SINE B2 -1 194 3 1 1416 1024 64 43 0 chr9 108981386 108981527 -15094645 - B1_Mus1 SINE Alu 0 148 2 1 1416 822 271 116 4 chr9 108981573 108981832 -15094340 - B4 SINE B4 -4 288 1 1 1416 810 233 54 5 chr9 108981855 108982058 -15094114 - B3 SINE B2 -3 213 1 1 1416 462 298 35 0 chr9 108982116 108982257 -15093915 - RSINE1 SINE B4 -18 147 2 1 1416 1173 34 0 13 chr9 108982323 108982472 -15093700 - B1_Mm SINE Alu 0 147 1 1 1416 1081 96 0 0 chr9 108982520 108982666 -15093506 + B1_Mus1 SINE Alu 2 147 -1 1 1416 730 165 45 0 chr9 108982691 108982824 -15093348 + B1_Mm SINE Alu 9 147 0 1 1416 251 252 33 90 chr9 108983500 108983584 -15092588 + PB1D10 SINE Alu 1 85 -32 1 1416 639 56 287 0 chr9 108983584 108983692 -15092480 - B1_Mus1 SINE Alu -5 143 5 1 1416 251 252 33 90 chr9 108983692 108983729 -15092443 + PB1D10 SINE Alu 86 115 -2 1 1416 866 199 120 5 chr9 108983736 108983928 -15092244 + B3 SINE B2 3 216 0 1 1416 328 300 185 37 chr9 108985480 108985854 -15090318 - L2a LINE L2 -150 3276 2838 1 1416 273 264 43 52 chr9 108985959 108986075 -15090097 - L2a LINE L2 -791 2628 2514 1 1416 324 0 0 0 chr9 108986178 108986214 -15089958 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1416 305 242 0 0 chr9 108986244 108986306 -15089866 - ID4 SINE ID -17 66 5 1 1416 422 245 107 84 chr9 108986326 108986504 -15089668 - B3A SINE B2 -15 183 2 1 1416 391 274 54 39 chr9 108986514 108986643 -15089529 - L1MB8 LINE L1 0 6178 6048 1 1416 233 159 23 0 chr9 108986687 108986731 -15089441 - B1F SINE Alu -90 59 15 1 1416 563 226 147 21 chr9 108986851 108987041 -15089131 - B3 SINE B2 -2 214 1 1 1416 1084 89 0 0 chr9 108987072 108987218 -15088954 - B1_Mus1 SINE Alu 0 148 3 1 1416 616 203 17 0 chr9 108987226 108987344 -15088828 - PB1D9 SINE Alu 0 120 1 1 1416 21 0 0 0 chr9 108987350 108987371 -15088801 + AT_rich Low_complexity Low_complexity 1 21 0 1 1416 914 163 0 0 chr9 108987399 108987540 -15088632 - B1_Mur1 SINE Alu -7 142 2 1 1416 475 259 39 91 chr9 108987542 108987750 -15088422 - B3A SINE B2 -1 197 1 1 1416 189 244 75 32 chr9 108987800 108987893 -15088279 - L2a LINE L2 -1291 2128 2032 1 1416 952 110 7 52 chr9 108988165 108988319 -15087853 + B1_Mm SINE Alu 1 147 0 1 1416 384 122 0 24 chr9 108988322 108988406 -15087766 + Lx LINE L1 6572 6653 -1 1 1416 1042 80 0 0 chr9 108988408 108988546 -15087626 + B1_Mus2 SINE Alu 1 138 -9 1 1416 183 129 0 0 chr9 108988560 108988591 -15087581 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1416 207 0 0 0 chr9 108988596 108988619 -15087553 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1416 1265 96 0 21 chr9 108989249 108989440 -15086732 + B2_Mm2 SINE B2 1 187 -8 1 1416 360 97 0 0 chr9 108991161 108991223 -15084949 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1416 309 269 0 13 chr9 108991236 108991315 -15084857 - ID4 SINE ID -4 79 2 1 1416 447 254 60 23 chr9 108991357 108991490 -15084682 - B1F1 SINE Alu -2 147 10 1 1416 198 0 0 0 chr9 108992283 108992305 -15083867 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1416 298 183 241 12 chr9 108992305 108992383 -15083789 - PB1D7 SINE Alu -9 111 14 1 1416 320 250 0 0 chr9 108992329 108992393 -15083779 - ID_B1 SINE B4 -80 144 81 1 1416 292 326 96 0 chr9 108992393 108992528 -15083644 - B1F SINE Alu 0 149 2 1 1416 405 0 0 0 chr9 108993837 108993882 -15082290 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1416 1577 130 238 6 chr9 108996306 108996408 -15079764 - MTC LTR MaLR 0 421 317 1 1416 227 31 0 30 chr9 108996408 108996441 -15079731 + (CAGGA)n Simple_repeat Simple_repeat 4 35 0 1 1416 1577 130 238 6 chr9 108996441 108996679 -15079493 - MTC LTR MaLR -105 316 4 1 1416 29 60 0 0 chr9 108997865 108997915 -15078257 + GC_rich Low_complexity Low_complexity 1 50 0 1 1416 25 31 0 0 chr9 108997977 108998009 -15078163 + GC_rich Low_complexity Low_complexity 1 32 0 1 1416 184 210 141 31 chr9 109000051 109000115 -15076057 + L2a LINE L2 3341 3411 -15 1 1416 730 188 47 0 chr9 109002017 109002145 -15074027 - B1_Mur2 SINE Alu -2 147 14 2 1416 380 317 56 84 chr9 109002145 109002196 -15073976 - ID_B1 SINE B4 -2 222 49 3 1416 1214 114 16 11 chr9 109003908 109004094 -15072078 + B2_Mm2 SINE B2 1 187 -8 4 1416 453 243 37 0 chr9 109004873 109004980 -15071192 - B1_Mur1 SINE Alu -35 114 4 5 1416 25 31 0 0 chr9 109009863 109009895 -15066277 + AT_rich Low_complexity Low_complexity 1 32 0 6 1416 288 312 405 46 chr9 109009956 109010196 -15065976 - Tigger12A DNA MER2_type -130 661 336 7 1416 180 0 0 0 chr9 109010200 109010220 -15065952 + (C)n Simple_repeat Simple_repeat 1 20 0 8 1416 186 133 0 0 chr9 109013344 109013374 -15062798 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1416 936 132 226 33 chr9 109013391 109013572 -15062600 - B3 SINE B2 0 216 1 1 1416 225 288 53 40 chr9 109015258 109015334 -15060838 - ID4_ SINE ID -3 80 4 1 1416 587 191 13 13 chr9 109016425 109016579 -15059593 + CT-rich Low_complexity Low_complexity 2 155 0 1 1416 630 231 82 20 chr9 109017687 109017833 -15058339 + RSINE1 SINE B4 11 165 0 1 1416 241 308 75 19 chr9 109017867 109017973 -15058199 - MER81 DNA AcHobo -1 113 2 1 1416 314 98 20 0 chr9 109020944 109020995 -15055177 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1416 768 83 38 53 chr9 109022679 109022819 -15053353 + B1_Mus2 SINE Alu 11 147 0 1 1416 620 206 92 0 chr9 109022829 109022960 -15053212 - B1_Mur1 SINE Alu -5 144 2 1 1416 1183 75 40 61 chr9 109022974 109023172 -15053000 - B2_Mm2 SINE B2 0 195 2 1 1416 679 210 69 14 chr9 109023513 109023658 -15052514 + B3A SINE B2 2 154 -44 1 1416 375 251 91 0 chr9 109023737 109023832 -15052340 - B1F1 SINE Alu -7 113 1 2 1416 573 260 59 163 chr9 109023845 109024047 -15052125 + B3 SINE B2 16 196 -20 2 1416 851 161 35 0 chr9 109024057 109024200 -15051972 - B1_Mus1 SINE Alu 0 148 1 2 1416 594 257 21 0 chr9 109024229 109024369 -15051803 + B1F1 SINE Alu 2 144 -5 2 1416 5103 53 7 48 chr9 109024535 109025222 -15050950 - L1Md_F2 LINE L1 0 6582 5924 2 1416 377 254 132 25 chr9 109025309 109025430 -15050742 + B3A SINE B2 60 193 -5 2 1416 213 312 51 20 chr9 109025841 109025939 -15050233 + MIR SINE MIR 17 117 -91 2 1416 237 153 42 0 chr9 109027444 109027516 -15048656 + CT-rich Low_complexity Low_complexity 2 76 0 2 1416 754 133 92 15 chr9 109027605 109027735 -15048437 - B1_Mus1 SINE Alu 0 148 9 2 1416 398 227 80 0 chr9 109028239 109028327 -15047845 - RSINE1 SINE B4 -10 155 61 2 1416 1327 195 56 66 chr9 109028699 109028985 -15047187 - MTD LTR MaLR -136 283 1 3 1416 744 175 0 7 chr9 109029067 109029205 -15046967 - B1_Mm SINE Alu -2 145 9 3 1416 407 269 10 0 chr9 109029224 109029328 -15046844 - Cheshire DNA MER1_type -1490 930 826 3 1416 328 246 0 0 chr9 109029413 109029478 -15046694 + B1F SINE Alu 3 67 -82 3 1416 441 0 0 0 chr9 109029719 109029768 -15046404 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1416 23 0 0 0 chr9 109029988 109030011 -15046161 + AT_rich Low_complexity Low_complexity 1 23 0 3 1416 1268 86 5 65 chr9 109030011 109030210 -15045962 - B2_Mm1a SINE B2 -6 187 1 3 1416 462 320 62 25 chr9 109030276 109030436 -15045736 - Tigger7 DNA MER2_type -2205 286 121 3 1416 260 250 16 0 chr9 109030437 109030501 -15045671 + MTEa LTR MaLR 2 66 -313 3 1416 496 192 39 39 chr9 109030511 109030614 -15045558 + MTEb LTR MaLR 277 379 0 3 1416 231 191 381 31 chr9 109030632 109030712 -15045460 - B1_Mur4 SINE Alu 0 150 37 4 1416 564 258 45 0 chr9 109030712 109030844 -15045328 - B1_Mur1 SINE Alu -7 142 5 4 1416 231 191 381 31 chr9 109030844 109030860 -15045312 - B1_Mur4 SINE Alu -114 36 20 4 1416 554 185 35 61 chr9 109030859 109030974 -15045198 - B3 SINE B2 -2 214 103 4 1416 840 71 0 0 chr9 109031063 109031175 -15044997 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 1416 334 264 43 32 chr9 109031185 109031279 -15044893 - Tigger7 DNA MER2_type -2394 97 3 3 1416 330 276 218 36 chr9 109031412 109031606 -15044566 + B4A SINE B4 1 230 -62 4 1416 529 278 30 8 chr9 109031606 109031740 -15044432 + RSINE1 SINE B4 3 139 -26 4 1416 39 38 0 0 chr9 109031878 109031931 -15044241 + AT_rich Low_complexity Low_complexity 1 53 0 4 1416 821 249 10 0 chr9 109031965 109032158 -15044014 - B3 SINE B2 -17 199 5 4 1416 568 319 19 13 chr9 109032593 109032752 -15043420 - RSINE1 SINE B4 -1 164 5 4 1416 3246 55 177 2 chr9 109032779 109033213 -15042959 + RLTR1B LTR ERV1 1 510 -2 4 1416 620 263 153 68 chr9 109033495 109033834 -15042338 - RLTR9A LTR ERVK 0 368 1 5 1416 1193 74 0 0 chr9 109033998 109034146 -15042026 - B1_Mus1 SINE Alu 0 148 1 5 1416 1236 102 17 6 chr9 109034221 109034399 -15041773 - B2_Mm1t SINE B2 -12 181 2 5 1416 839 263 34 25 chr9 109034617 109034941 -15041231 - RLTR6-int LTR ERV1 -126 7652 7326 5 1416 1140 82 0 0 chr9 109034942 109035089 -15041083 - B1_Mus2 SINE Alu 0 147 1 5 1416 946 148 60 15 chr9 109035221 109035420 -15040752 - RMER16-int LTR ERVK -1706 3700 3493 5 1416 9587 116 32 13 chr9 109035395 109036962 -15039210 - RMER16-int LTR ERVK -2114 3292 1695 5 1416 225 128 0 0 chr9 109036962 109037009 -15039163 + (A)n Simple_repeat Simple_repeat 1 47 0 5 1416 551 242 16 0 chr9 109037041 109037165 -15039007 - RMER16-int LTR ERVK -3715 1691 1566 5 1416 704 283 15 70 chr9 109037452 109037975 -15038197 - RMER16-int LTR ERVK -5075 2331 1315 5 1416 3151 192 4 59 chr9 109038075 109038227 -15037945 - RMER16-int LTR ERVK -3808 1598 1458 5 1416 1622 32 0 0 chr9 109038227 109038414 -15037758 - B2_Mm1t SINE B2 -6 187 1 5 1416 3151 195 15 64 chr9 109038414 109039083 -15037089 - RMER16-int LTR ERVK -5315 2091 898 5 1416 1354 80 0 6 chr9 109039083 109039260 -15036912 - B2_Mm2 SINE B2 -18 177 2 5 1416 2464 165 127 9 chr9 109039260 109039665 -15036507 - ETnERV2-int LTR ERVK -5985 1421 1085 6 1416 708 270 116 64 chr9 109040056 109040396 -15035776 - RLTR9A LTR ERVK -1 392 16 6 1416 250 329 24 0 chr9 109040521 109040603 -15035569 - PB1D10 SINE Alu -1 116 33 6 1416 483 226 55 3 chr9 109040596 109040712 -15035460 - B3 SINE B2 -88 128 9 6 1416 307 262 60 0 chr9 109040723 109040807 -15035365 - ID_B1 SINE B4 0 224 136 6 1416 293 247 31 115 chr9 109040807 109040818 -15035354 - PB1D10 SINE Alu 0 116 30 6 1416 678 252 218 33 chr9 109040871 109041142 -15035030 + ORR1D1 LTR MaLR 1 321 -53 6 1416 496 199 66 105 chr9 109041143 109041295 -15034877 - B1_Mus1 SINE Alu 0 148 3 6 1416 806 198 198 0 chr9 109041344 109041516 -15034656 - B3 SINE B2 -9 207 2 6 1416 22 0 0 0 chr9 109041639 109041661 -15034511 + AT_rich Low_complexity Low_complexity 1 22 0 6 1416 281 286 26 13 chr9 109041686 109041764 -15034408 - 7SK RNA RNA -250 81 3 7 1416 708 194 27 40 chr9 109041775 109041925 -15034247 - B1_Mur1 SINE Alu 0 149 2 7 1416 386 286 76 64 chr9 109041925 109041971 -15034201 - B4 SINE B4 -206 86 39 7 1416 1363 72 44 0 chr9 109042257 109042437 -15033735 + B2_Mm2 SINE B2 1 188 -7 7 1416 249 197 0 0 chr9 109042448 109042509 -15033663 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1416 465 259 78 65 chr9 109042602 109042755 -15033417 - RSINE1 SINE B4 0 165 11 7 1416 349 252 168 16 chr9 109042904 109043029 -15033143 + B1F SINE Alu 1 144 -5 7 1416 22 0 0 0 chr9 109043044 109043066 -15033106 + AT_rich Low_complexity Low_complexity 1 22 0 7 1416 368 329 126 16 chr9 109043468 109043715 -15032457 + L1MDa LINE L1 1608 1881 -4752 7 1416 269 271 61 70 chr9 109043729 109043844 -15032328 + ID_B1 SINE B4 108 221 -3 7 1416 495 148 0 0 chr9 109043852 109043940 -15032232 + (CA)n Simple_repeat Simple_repeat 1 88 0 8 1416 564 287 139 55 chr9 109043944 109044419 -15031753 + L1M2 LINE L1 4672 5186 -957 8 1416 509 314 7 0 chr9 109044500 109044637 -15031535 - B1F SINE Alu -9 140 3 8 1416 435 190 128 20 chr9 109044734 109044836 -15031336 + B1_Mur4 SINE Alu 23 135 -15 8 1416 347 296 97 9 chr9 109045191 109045337 -15030835 - B4 SINE B4 -46 246 87 8 1416 482 238 0 2 chr9 109045237 109045342 -15030830 - B1_Mur2 SINE Alu -45 104 1 8 1416 451 290 69 31 chr9 109045347 109045507 -15030665 - ID_B1 SINE B4 0 224 59 8 1416 873 156 19 44 chr9 109045536 109045741 -15030431 - B3 SINE B2 -3 192 1 8 1416 391 261 92 98 chr9 109045977 109046130 -15030042 + RSINE1 SINE B4 3 154 -11 8 1416 463 238 0 45 chr9 109046809 109046919 -15029253 + B1_Mur3 SINE Alu 45 149 0 8 1416 21 0 0 0 chr9 109046997 109047018 -15029154 + AT_rich Low_complexity Low_complexity 1 21 0 9 1416 618 255 14 21 chr9 109047021 109047163 -15029009 - RSINE1 SINE B4 -8 157 17 9 1416 574 195 169 82 chr9 109047163 109047370 -15028802 - URR1A DNA MER1_type 0 226 2 9 1416 1213 75 0 0 chr9 109047434 109047581 -15028591 - B1_Mm SINE Alu 0 147 1 9 1416 738 212 14 14 chr9 109047595 109047743 -15028429 - B1_Mur2 SINE Alu 0 149 2 9 1416 245 297 0 0 chr9 109047775 109047839 -15028333 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1416 324 0 0 0 chr9 109049422 109049458 -15026714 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1416 378 0 0 0 chr9 109049458 109049499 -15026673 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 1416 334 45 45 0 chr9 109049510 109049554 -15026618 - B1_Mus2 SINE Alu -16 131 86 9 1416 777 288 70 35 chr9 109049623 109049853 -15026319 - B4A SINE B4 -54 238 1 9 1416 2347 45 10 7 chr9 109049882 109050220 -15025952 + L1Md_F3 LINE L1 6276 6584 0 1 1416 518 250 42 21 chr9 109050882 109051025 -15025147 + B1F2 SINE Alu 3 148 -1 1 1416 848 183 191 16 chr9 109051033 109051216 -15024956 + B3 SINE B2 2 216 0 1 1416 461 255 29 0 chr9 109051335 109051437 -15024735 + RSINE1 SINE B4 4 108 -57 1 1416 740 145 68 61 chr9 109051548 109051695 -15024477 - B1_Mur2 SINE Alu 0 149 2 1 2 943 101 0 0 chr9 109051853 109051982 -15024190 + B2_Mm2 SINE B2 1 129 -66 1 1417 2815 113 57 39 chr9 109052001 109052514 -15023658 - RLTR1D LTR ERV1 -16 589 1 1 1417 414 57 0 0 chr9 109052554 109052607 -15023565 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1417 267 54 0 0 chr9 109052607 109052644 -15023528 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1417 329 43 0 0 chr9 109053003 109053050 -15023122 + Lx2A LINE L1 6957 7003 -5 1 1417 399 262 26 20 chr9 109053417 109053533 -15022639 + B1_Mur4 SINE Alu 2 112 -38 1 1417 738 217 35 0 chr9 109053708 109053851 -15022321 + B1_Mur1 SINE Alu 2 149 0 1 1417 232 288 37 12 chr9 109054457 109054538 -15021634 - RMER1A Other Other -649 381 299 1 1417 1015 251 43 26 chr9 109054586 109054882 -15021290 + MTD LTR MaLR 58 370 0 1 1417 2342 157 56 19 chr9 109055032 109055493 -15020679 + RMER17C-int LTR ERVK 1375 1852 -1386 1 1417 4977 124 31 22 chr9 109055924 109056787 -15019385 + RMER17C-int LTR ERVK 2368 3238 0 1 1417 1213 238 15 54 chr9 109056787 109057192 -15018980 + RMER17C LTR ERVK 1 389 -21 1 1417 2158 24 0 8 chr9 109057207 109057463 -15018709 - L1Md_F3 LINE L1 0 6584 6331 1 1417 700 281 132 3 chr9 109057628 109057939 -15018233 + L1_Mur3 LINE L1 4012 4362 -1518 1 1417 461 196 106 63 chr9 109057958 109058085 -15018087 + B1_Mur3 SINE Alu 2 138 -11 1 1417 219 88 0 0 chr9 109058085 109058119 -15018053 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1417 461 196 106 63 chr9 109058119 109058133 -15018039 + B1_Mur3 SINE Alu 139 149 0 1 1417 22 0 0 0 chr9 109058322 109058344 -15017828 + AT_rich Low_complexity Low_complexity 1 22 0 1 1417 261 260 0 0 chr9 109058347 109058420 -15017752 + L1M2 LINE L1 4399 4471 -1672 1 1417 499 280 86 7 chr9 109058443 109058594 -15017578 + B3 SINE B2 47 209 -7 1 1417 363 283 0 28 chr9 109058631 109058740 -15017432 + PB1D9 SINE Alu 4 109 -11 1 1417 328 255 64 28 chr9 109059192 109059301 -15016871 + ID_B1 SINE B4 112 224 0 1 1417 662 171 0 14 chr9 109059301 109059449 -15016723 + GA-rich Low_complexity Low_complexity 3 148 0 1 1417 424 219 38 28 chr9 109059476 109059588 -15016584 + B1_Mur1 SINE Alu 27 149 0 1 1417 309 326 74 0 chr9 109060711 109060846 -15015326 - B1_Mus1 SINE Alu -2 146 2 1 1417 6438 82 66 11 chr9 109060961 109062610 -15013562 + L1VL2 LINE L1 73 1826 -1789 1 1417 262 282 47 0 chr9 109062754 109062839 -15013333 - PB1D10 SINE Alu -2 115 27 1 1417 1254 34 7 0 chr9 109063536 109063682 -15012490 + B1_Mm SINE Alu 1 147 0 1 1417 21 0 0 0 chr9 109063709 109063730 -15012442 + AT_rich Low_complexity Low_complexity 1 21 0 1 1417 28 48 0 0 chr9 109063883 109063925 -15012247 + AT_rich Low_complexity Low_complexity 1 42 0 1 1417 253 203 95 0 chr9 109064025 109064099 -15012073 + L1M2 LINE L1 2745 2825 -3318 1 1417 612 101 0 0 chr9 109064202 109064291 -15011881 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 1 1417 1015 54 85 0 chr9 109065178 109065308 -15010864 - B1_Mm SINE Alu -6 141 1 1 1417 654 151 95 0 chr9 109065407 109065533 -15010639 - B1_Mus1 SINE Alu -2 146 9 1 1417 369 215 76 0 chr9 109065952 109066031 -15010141 - RSINE1 SINE B4 -19 146 62 1 1417 1423 187 148 50 chr9 109066379 109066756 -15009416 - MTD LTR MaLR 0 419 6 1 1417 767 179 0 7 chr9 109066844 109066990 -15009182 - B1_Mm SINE Alu -2 145 1 1 1417 266 275 99 0 chr9 109067006 109067097 -15009075 - Cheshire DNA MER1_type -1495 925 826 1 1417 260 301 39 10 chr9 109067600 109067704 -15008468 + Cheshire DNA MER1_type 538 644 -1776 1 1417 664 160 42 0 chr9 109067706 109067825 -15008347 - B1_Mur3 SINE Alu -5 144 21 1 1417 332 339 0 8 chr9 109067909 109068034 -15008138 + RSINE1 SINE B4 20 143 -22 1 1417 21 36 0 0 chr9 109068034 109068062 -15008110 + AT_rich Low_complexity Low_complexity 1 28 0 1 1417 282 299 82 68 chr9 109068082 109068229 -15007943 + B3A SINE B2 23 171 -27 1 1417 6570 71 19 9 chr9 109068436 109069317 -15006855 - L1_Mus3 LINE L1 -5 6633 5744 1 1417 23 33 0 0 chr9 109069320 109069350 -15006822 + AT_rich Low_complexity Low_complexity 1 30 0 1 1417 374 247 52 31 chr9 109069361 109069457 -15006715 + B1F SINE Alu 3 100 -49 1 1417 285 29 0 0 chr9 109069503 109069537 -15006635 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1417 499 304 62 0 chr9 109069975 109070136 -15006036 - Tigger7 DNA MER2_type -2200 291 121 1 1417 369 172 55 44 chr9 109070219 109070310 -15005862 + MTEa LTR MaLR 288 379 0 1 1417 393 235 78 9 chr9 109070403 109070519 -15005653 - B1_Mur2 SINE Alu 0 149 26 1 1417 432 229 35 52 chr9 109070537 109070652 -15005520 - B3 SINE B2 -1 215 103 1 1417 240 195 0 0 chr9 109070704 109070745 -15005427 - ID SINE ID -158 66 26 1 1417 387 0 0 0 chr9 109070746 109070789 -15005383 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1417 236 300 43 32 chr9 109070797 109070890 -15005282 - Tigger7 DNA MER2_type -2394 97 4 1 1417 295 302 208 21 chr9 109071030 109071222 -15004950 + B4A SINE B4 6 233 -59 1 1417 446 250 9 0 chr9 109071231 109071339 -15004833 + RSINE1 SINE B4 17 125 -40 1 1417 29 28 0 0 chr9 109071500 109071536 -15004636 + AT_rich Low_complexity Low_complexity 1 36 0 1 1417 695 265 37 0 chr9 109071570 109071759 -15004413 - B3 SINE B2 -20 196 1 1 1417 423 329 26 13 chr9 109072197 109072348 -15003824 - RSINE1 SINE B4 -1 164 12 1 1417 518 264 159 77 chr9 109072658 109072998 -15003174 - RLTR9A LTR ERVK 0 368 1 1 1417 5094 70 0 2 chr9 109073163 109073804 -15002368 - L1_Mus2 LINE L1 0 6566 5927 1 1417 9437 121 20 39 chr9 109073804 109076079 -15000093 - L1Md_F LINE L1 -1303 2514 280 1 1417 878 314 16 13 chr9 109076308 109076692 -14999480 - RLTR6-int LTR ERV1 -115 7663 7279 1 1417 747 139 193 0 chr9 109076758 109076924 -14999248 - RMER16-int LTR ERVK -1706 3700 3503 1 1417 9293 146 35 55 chr9 109076909 109077583 -14998589 - RMER16-int LTR ERVK -2114 3292 2622 1 1417 212 35 0 0 chr9 109077583 109077612 -14998560 - PB1D9 SINE Alu -90 30 2 1 1417 9293 146 35 55 chr9 109077612 109078671 -14997501 - RMER16-int LTR ERVK -2114 2621 1566 1 1417 336 262 53 53 chr9 109078808 109078941 -14997231 - SRV_MM-int LTR ERVK -3890 2277 2145 1 1417 668 252 1 117 chr9 109078943 109079308 -14996864 - RLTR45-int LTR ERVK -3773 3471 3266 1 1417 436 251 192 47 chr9 109079776 109080010 -14996162 - RLTR9A LTR ERVK -98 270 3 1 1417 260 309 50 30 chr9 109080125 109080225 -14995947 - PB1D10 SINE Alu -1 116 15 1 1417 384 59 0 0 chr9 109080257 109080308 -14995864 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1 1417 753 184 92 0 chr9 109080313 109080487 -14995685 - B3 SINE B2 -25 191 2 1 1417 235 333 23 0 chr9 109080493 109080580 -14995592 - ID_B1 SINE B4 0 224 136 1 1417 842 198 220 8 chr9 109080644 109080899 -14995273 + ORR1D1 LTR MaLR 1 309 -65 1 1417 550 174 62 96 chr9 109080920 109081066 -14995106 - B1_Mus1 SINE Alu -7 141 1 1 1417 569 219 41 0 chr9 109081163 109081286 -14994886 - B3 SINE B2 -87 129 2 1 1417 246 202 92 35 chr9 109081320 109081407 -14994765 + Lx9 LINE L1 7531 7622 -22 1 1417 577 207 27 48 chr9 109081551 109081698 -14994474 - B1_Mur3 SINE Alu -4 145 2 1 1417 1150 68 7 7 chr9 109082011 109082159 -14994013 - B1_Mus1 SINE Alu 0 148 1 1 1417 375 331 7 0 chr9 109082186 109082337 -14993835 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 1417 407 261 78 78 chr9 109082349 109082503 -14993669 - RSINE1 SINE B4 0 165 12 1 1417 315 246 43 43 chr9 109082653 109082768 -14993404 + PB1D7 SINE Alu 1 115 -5 1 1417 28 0 0 0 chr9 109082777 109082805 -14993367 + AT_rich Low_complexity Low_complexity 1 28 0 1 1417 784 114 0 8 chr9 109083319 109083443 -14992729 - B3 SINE B2 -92 124 2 1 1417 367 279 98 39 chr9 109083679 109083832 -14992340 + RSINE1 SINE B4 3 164 -1 1 1417 337 263 84 0 chr9 109084531 109084626 -14991546 + B1_Mus2 SINE Alu 45 147 0 1 1417 447 284 56 21 chr9 109084722 109084864 -14991308 - RSINE1 SINE B4 -2 163 17 1 1417 519 184 13 72 chr9 109084864 109085016 -14991156 - URR1B DNA MER1_type 0 225 83 1 1417 587 260 7 0 chr9 109085121 109085267 -14990905 - B1_Mur1 SINE Alu 0 149 3 1 1417 189 107 0 0 chr9 109085328 109085356 -14990816 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1417 211 295 0 114 chr9 109086255 109086343 -14989829 + B1F1 SINE Alu 3 80 -69 1 1417 350 238 23 0 chr9 109086886 109086982 -14989190 + B1_Mur1 SINE Alu 47 144 -5 1 1417 357 43 0 0 chr9 109087195 109087242 -14988930 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1417 786 325 54 32 chr9 109087263 109087543 -14988629 - B4A SINE B4 -6 286 1 1 1417 556 250 21 7 chr9 109088104 109088249 -14987923 + B1F2 SINE Alu 3 149 0 1 1417 748 155 0 15 chr9 109088257 109088388 -14987784 + B3 SINE B2 2 130 -86 1 1417 433 226 39 0 chr9 109088559 109088661 -14987511 + RSINE1 SINE B4 4 109 -56 1 1417 209 98 24 0 chr9 109088767 109088808 -14987364 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1417 603 170 78 43 chr9 109088814 109088955 -14987217 - B1_Mur2 SINE Alu 0 149 4 1 1417 791 164 22 7 chr9 109089100 109089279 -14986893 + B2_Mm2 SINE B2 2 187 -6 1 1417 237 83 0 0 chr9 109089279 109089315 -14986857 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1417 348 243 0 0 chr9 109089657 109089731 -14986441 + B1F2 SINE Alu 30 103 -46 2 1417 540 252 35 0 chr9 109089909 109090052 -14986120 + B1_Mur1 SINE Alu 2 149 0 2 1417 403 195 22 22 chr9 109090648 109090737 -14985435 - RMER1A Other Other -643 387 299 2 1417 601 254 8 0 chr9 109090786 109090916 -14985256 + MTD LTR MaLR 80 210 -209 2 1417 1341 96 11 0 chr9 109090916 109091104 -14985068 + B2_Mm1a SINE B2 1 190 -3 2 1417 304 89 0 0 chr9 109091116 109091161 -14985011 + B1_Mm SINE Alu 103 147 0 2 1417 368 189 39 24 chr9 109091199 109091286 -14984886 + MTD LTR MaLR 182 274 -145 2 1417 2163 180 38 91 chr9 109091513 109091710 -14984462 + RMER17C-int LTR ERVK 1368 1547 -1691 2 1417 1240 54 0 0 chr9 109091710 109091857 -14984315 - B1_Mus2 SINE Alu 0 147 1 2 1417 2163 180 38 91 chr9 109091857 109092186 -14983986 + RMER17C-int LTR ERVK 1548 1866 -1372 2 1417 4989 138 35 19 chr9 109092576 109092704 -14983468 + RMER17C-int LTR ERVK 2368 2498 -740 2 1417 393 22 0 0 chr9 109092704 109092750 -14983422 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1417 4989 138 35 19 chr9 109092750 109093477 -14982695 + RMER17C-int LTR ERVK 2499 3237 -1 2 1417 1060 223 17 88 chr9 109093477 109093895 -14982277 + RMER17C LTR ERVK 1 388 -22 2 1417 597 287 141 10 chr9 109094056 109094362 -14981810 + L1_Mur3 LINE L1 4017 4362 -1518 2 1417 507 203 114 23 chr9 109094387 109094518 -14981654 + B1_Mus2 SINE Alu 5 147 0 2 1417 323 249 2 0 chr9 109094536 109094623 -14981549 + B3A SINE B2 12 99 -117 2 1417 22 0 0 0 chr9 109094664 109094686 -14981486 + AT_rich Low_complexity Low_complexity 1 22 0 2 1417 274 260 0 0 chr9 109094689 109094762 -14981410 + L1M2 LINE L1 4399 4471 -1672 2 1417 535 267 12 47 chr9 109094785 109094954 -14981218 + B3 SINE B2 47 209 -7 2 1417 353 302 0 28 chr9 109094997 109095106 -14981066 + PB1D9 SINE Alu 4 109 -11 2 1417 280 273 21 86 chr9 109096066 109096081 -14980091 + YREP_Mm Unknown Unknown 171 250 -1562 2 1417 566 188 25 8 chr9 109096081 109096199 -14979973 - ID_B1 SINE B4 -2 222 103 2 1417 321 305 0 31 chr9 109096352 109096450 -14979722 + ID_B1 SINE B4 127 221 -3 2 1417 477 193 0 21 chr9 109096453 109096596 -14979576 + GA-rich Low_complexity Low_complexity 3 142 0 2 1417 440 222 10 20 chr9 109096634 109096735 -14979437 + B1_Mur1 SINE Alu 50 149 0 2 1417 291 28 0 0 chr9 109096780 109096816 -14979356 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1417 22 35 0 0 chr9 109096850 109096879 -14979293 + AT_rich Low_complexity Low_complexity 1 29 0 2 1417 446 286 32 0 chr9 109097877 109098003 -14978169 - ID_B1 SINE B4 -8 216 87 2 1417 228 200 0 0 chr9 109098193 109098248 -14977924 + GA-rich Low_complexity Low_complexity 4 58 0 2 1417 335 237 26 0 chr9 109099241 109099317 -14976855 + B1_Mur4 SINE Alu 25 102 -48 2 1417 223 128 0 0 chr9 109099305 109099344 -14976828 - B3 SINE B2 -176 40 2 2 1417 254 176 12 0 chr9 109099876 109099961 -14976211 + CT-rich Low_complexity Low_complexity 1 86 0 2 1417 732 95 110 8 chr9 109100065 109100192 -14975980 - B1_Mur4 SINE Alu -2 148 9 2 1417 270 284 79 11 chr9 109100611 109100700 -14975472 - RSINE1 SINE B4 -10 155 61 2 1417 3544 54 22 63 chr9 109100866 109101361 -14974811 + MT2C_Mm LTR ERVL 1 475 0 2 1417 5311 102 12 9 chr9 109101361 109102102 -14974070 + MERVL-int LTR ERVL 1 743 -4742 2 1417 2116 88 7 17 chr9 109102098 109102399 -14973773 - MERVL-int LTR ERVL -4402 1083 786 2 1417 1930 72 48 7 chr9 109102400 109102521 -14973651 + MT2C_Mm LTR ERVL 167 299 -176 2 1417 267 31 0 0 chr9 109102521 109102553 -14973619 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1417 1930 72 48 7 chr9 109102553 109102724 -14973448 + MT2C_Mm LTR ERVL 300 471 -4 2 1417 1595 181 78 75 chr9 109102939 109103352 -14972820 - MTD LTR MaLR 0 419 6 2 1417 765 160 7 34 chr9 109103440 109103589 -14972583 - B1_Mm SINE Alu -2 145 1 2 1417 331 278 11 0 chr9 109103607 109103697 -14972475 - Cheshire DNA MER1_type -1504 916 826 2 1417 1211 106 67 0 chr9 109103775 109103934 -14972238 + B2_Mm1a SINE B2 1 160 -33 2 1417 216 0 0 0 chr9 109103934 109103958 -14972214 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2 1417 1211 106 67 0 chr9 109103958 109103977 -14972195 + B2_Mm1a SINE B2 161 189 -4 2 1417 324 281 43 17 chr9 109104394 109104510 -14971662 + Cheshire DNA MER1_type 531 649 -1771 2 1417 594 0 0 0 chr9 109104527 109104593 -14971579 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 2 1417 540 0 0 0 chr9 109104601 109104661 -14971511 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2 1417 1023 99 0 0 chr9 109104661 109104813 -14971359 - B2_Mm2 SINE B2 -42 153 2 2 1417 687 141 44 15 chr9 109104816 109104953 -14971219 - B1_Mur3 SINE Alu 0 149 9 2 1417 441 343 0 40 chr9 109105004 109105153 -14971019 + RSINE1 SINE B4 2 144 -21 2 1417 27 0 0 0 chr9 109105153 109105180 -14970992 + AT_rich Low_complexity Low_complexity 1 27 0 2 1417 230 330 110 0 chr9 109105180 109105289 -14970883 + B3 SINE B2 1 121 -95 2 1417 1051 166 0 6 chr9 109105557 109105733 -14970439 + B2_Mm2 SINE B2 2 176 -19 2 1417 514 67 236 32 chr9 109105807 109105930 -14970242 + B2_Mm2 SINE B2 47 194 -1 2 1417 308 291 52 30 chr9 109105936 109106048 -14970124 + B1F SINE Alu 3 117 -3 2 1417 305 357 19 25 chr9 109106540 109106701 -14969471 - MER44B DNA MER2_type -271 279 120 2 1417 446 181 36 54 chr9 109106768 109106879 -14969293 + MTEa LTR MaLR 268 376 -3 2 1417 599 241 58 0 chr9 109106976 109107113 -14969059 - B1_Mur1 SINE Alu 0 149 5 2 1417 541 176 35 44 chr9 109107128 109107241 -14968931 - B3 SINE B2 -2 214 103 2 1417 396 0 0 0 chr9 109107333 109107377 -14968795 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1417 249 308 43 32 chr9 109107386 109107480 -14968692 - MER44B DNA MER2_type -454 96 2 2 1417 339 265 212 31 chr9 109107611 109107805 -14968367 + B4A SINE B4 1 230 -62 2 1417 440 278 24 0 chr9 109107805 109107931 -14968241 + RSINE1 SINE B4 3 131 -34 2 1417 29 28 0 0 chr9 109108077 109108113 -14968059 + AT_rich Low_complexity Low_complexity 1 36 0 2 1417 633 253 60 0 chr9 109108165 109108347 -14967825 - B3 SINE B2 -19 197 5 2 1417 440 316 38 13 chr9 109108789 109108946 -14967226 - RSINE1 SINE B4 0 165 5 2 1417 411 299 147 65 chr9 109109250 109109590 -14966582 - RLTR9A LTR ERVK 0 368 1 2 1417 780 322 16 30 chr9 109109944 109110017 -14966155 - RLTR6-int LTR ERV1 -172 4891 4819 2 1417 1080 72 0 14 chr9 109110017 109110158 -14966014 + B1_Mm SINE Alu 1 139 -8 2 1417 198 0 0 0 chr9 109110158 109110180 -14965992 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1417 917 261 45 11 chr9 109110180 109110470 -14965702 - RLTR6-int LTR ERV1 -170 7608 7312 2 1417 862 134 110 16 chr9 109110558 109110740 -14965432 - RMER16-int LTR ERVK -1706 3700 3502 2 1417 8146 125 32 11 chr9 109110724 109112015 -14964157 - RMER16-int LTR ERVK -2114 3292 1974 2 1417 11200 59 2 0 chr9 109112020 109114108 -14962064 - L1Md_F2 LINE L1 -2 6580 4488 2 1417 2110 167 26 38 chr9 109114113 109114538 -14961634 - RMER16-int LTR ERVK -3429 1977 1566 2 1417 3020 82 7 9 chr9 109114655 109115076 -14961096 - BGLII LTR ERVK -1 420 1 2 1417 332 223 47 47 chr9 109115077 109115204 -14960968 - RMER16-int LTR ERVK -3873 2294 2168 2 1417 441 255 40 157 chr9 109115261 109115484 -14960688 - ETnERV2-int LTR ERVK -4860 2546 2350 2 1417 685 295 15 34 chr9 109115495 109115839 -14960333 - ETnERV2-int LTR ERVK -5076 2330 2176 2 1417 3999 183 22 25 chr9 109115903 109116664 -14959508 - RMER16-int LTR ERVK -3780 1626 868 2 1417 1669 157 141 11 chr9 109116722 109117076 -14959096 - RMER16-int LTR ERVK -4752 654 255 2 1417 455 271 142 78 chr9 109117485 109117829 -14958343 - RLTR9A LTR ERVK 0 368 3 2 1417 290 283 60 4 chr9 109117970 109118064 -14958108 - PB1D7 SINE Alu -11 109 11 2 1417 330 26 0 0 chr9 109118099 109118138 -14958034 + (TATG)n Simple_repeat Simple_repeat 4 42 0 2 1417 588 228 54 0 chr9 109118160 109118309 -14957863 - B3 SINE B2 -58 158 2 2 1417 269 296 25 0 chr9 109118316 109118397 -14957775 - ID_B1 SINE B4 0 224 142 2 1417 212 262 32 140 chr9 109118397 109118408 -14957764 - PB1D10 SINE Alu 0 116 35 2 1417 2903 68 44 3 chr9 109118505 109118889 -14957283 - MTB LTR MaLR 0 400 1 2 1417 666 236 149 0 chr9 109118897 109119105 -14957067 + ORR1D1 LTR MaLR 71 309 -65 2 1417 581 174 62 96 chr9 109119126 109119272 -14956900 - B1_Mus1 SINE Alu -7 141 1 2 1417 519 60 0 0 chr9 109119293 109119360 -14956812 + (TTTTC)n Simple_repeat Simple_repeat 2 68 0 2 1417 663 210 165 0 chr9 109119370 109119546 -14956626 - B3 SINE B2 -10 206 2 2 1417 263 195 11 58 chr9 109119578 109119665 -14956507 + Lx9 LINE L1 7531 7613 -31 2 1417 245 292 28 0 chr9 109119678 109119750 -14956422 - 7SK RNA RNA -250 81 8 2 1417 641 204 29 29 chr9 109119773 109119909 -14956263 - B1_Mur1 SINE Alu -12 137 2 2 1417 1234 114 0 6 chr9 109120237 109120414 -14955758 + B2_Mm2 SINE B2 1 176 -19 2 1417 304 208 19 0 chr9 109120451 109120557 -14955615 + (TG)n Simple_repeat Simple_repeat 1 108 0 2 1417 431 286 51 58 chr9 109120617 109120773 -14955399 - RSINE1 SINE B4 0 165 11 2 1417 397 223 18 22 chr9 109120924 109121042 -14955130 + PB1D7 SINE Alu 3 120 0 2 1417 28 0 0 0 chr9 109121049 109121077 -14955095 + AT_rich Low_complexity Low_complexity 1 28 0 2 1417 236 307 49 10 chr9 109121632 109121734 -14954438 + L1MDa LINE L1 1774 1879 -4754 2 1417 314 156 108 15 chr9 109121810 109121875 -14954297 + ID_B1 SINE B4 145 215 -9 2 1417 359 247 10 20 chr9 109121901 109122000 -14954172 + L1M3 LINE L1 4672 4769 -1374 2 1417 455 304 27 31 chr9 109122154 109122378 -14953794 + L1M3 LINE L1 4962 5184 -956 2 1417 207 0 0 0 chr9 109122398 109122421 -14953751 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1417 451 343 7 0 chr9 109122470 109122607 -14953565 - B1F SINE Alu -9 140 3 2 1417 410 229 83 0 chr9 109122694 109122803 -14953369 + B1_Mus1 SINE Alu 15 132 -16 2 1417 237 108 0 0 chr9 109122819 109122856 -14953316 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1417 466 217 129 9 chr9 109123195 109123311 -14952861 - B1_Mur2 SINE Alu -7 142 13 2 1417 362 305 70 32 chr9 109123329 109123485 -14952687 - ID_B1 SINE B4 0 224 63 2 1417 836 121 0 0 chr9 109123600 109123724 -14952448 - B3 SINE B2 -92 124 1 2 1417 336 291 98 33 chr9 109123958 109124111 -14952061 + RSINE1 SINE B4 3 165 0 3 1417 21 36 0 0 chr9 109124122 109124150 -14952022 + AT_rich Low_complexity Low_complexity 1 28 0 3 1417 431 218 40 0 chr9 109124800 109124901 -14951271 + B1_Mur3 SINE Alu 45 149 0 3 1417 549 262 14 21 chr9 109125003 109125145 -14951027 - RSINE1 SINE B4 -8 157 17 3 1417 519 197 7 66 chr9 109125145 109125297 -14950875 - URR1B DNA MER1_type 0 225 83 3 1417 601 207 93 29 chr9 109125402 109125541 -14950631 - B1_Mur1 SINE Alu 0 149 2 3 1417 310 109 0 0 chr9 109125563 109125609 -14950563 - HAL1-3A_ME LINE L1 -837 2021 1976 3 1417 203 250 0 0 chr9 109125609 109125653 -14950519 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1417 450 0 0 0 chr9 109127234 109127284 -14948888 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1417 597 152 10 0 chr9 109127318 109127417 -14948755 - B1_Mur4 SINE Alu -6 144 45 3 1417 620 250 21 0 chr9 109127466 109127606 -14948566 + B1_Mur1 SINE Alu 5 147 -2 3 1417 642 332 47 16 chr9 109127885 109128142 -14948030 - B4A SINE B4 -20 272 8 3 1417 554 246 35 21 chr9 109128718 109128863 -14947309 + B1F2 SINE Alu 3 149 0 3 1417 732 204 153 16 chr9 109128871 109129060 -14947112 + B3 SINE B2 2 216 0 3 1417 432 265 29 0 chr9 109129180 109129282 -14946890 + RSINE1 SINE B4 5 109 -56 3 1417 548 176 118 0 chr9 109129407 109129526 -14946646 - B1_Mur2 SINE Alu -8 141 9 3 1417 820 132 67 28 chr9 109129681 109129860 -14946312 + B2_Mm2 SINE B2 1 186 -9 3 1417 241 109 18 18 chr9 109129862 109129918 -14946254 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1417 300 258 3 50 chr9 109130194 109130297 -14945875 + B1F2 SINE Alu 2 95 -54 3 1417 540 231 37 0 chr9 109130484 109130618 -14945554 + B1_Mur1 SINE Alu 7 145 -4 3 1417 6162 170 1 0 chr9 109131111 109132151 -14944021 + L1_Mm LINE L1 4735 5775 -108 3 1417 4117 135 65 65 chr9 109132158 109132335 -14943837 + RMER17C-int LTR ERVK 2367 2553 -685 3 1417 250 260 0 0 chr9 109132335 109132385 -14943787 - LSU-rRNA_Hsa rRNA rRNA -784 4251 4202 3 1417 4117 135 65 65 chr9 109132385 109133030 -14943142 + RMER17C-int LTR ERVK 2554 3238 0 3 1417 1240 198 82 28 chr9 109133030 109133179 -14942993 + RMER17C LTR ERVK 1 158 -252 3 1417 189 0 0 0 chr9 109133179 109133200 -14942972 + (CCCCCG)n Simple_repeat Simple_repeat 4 24 0 3 1417 1240 198 82 28 chr9 109133200 109133439 -14942733 + RMER17C LTR ERVK 159 410 0 3 1417 271 227 148 0 chr9 109133456 109133544 -14942628 + RMER10A LTR ERVL 315 415 -27 3 1417 869 276 44 18 chr9 109133582 109133921 -14942251 + L1_Mur3 LINE L1 4015 4362 -1518 3 1417 527 159 127 60 chr9 109133946 109134080 -14942092 + B1_Mur1 SINE Alu 5 147 -2 3 1417 411 21 0 0 chr9 109134235 109134283 -14941889 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1417 255 274 0 0 chr9 109134307 109134380 -14941792 + L1M2 LINE L1 4399 4471 -1672 3 1417 485 291 28 62 chr9 109134403 109134579 -14941593 + B3 SINE B2 47 216 0 3 1417 250 314 36 45 chr9 109134596 109134706 -14941466 + PB1D9 SINE Alu 1 109 -11 3 1417 449 239 33 25 chr9 109135174 109135294 -14940878 + ID_B1 SINE B4 104 224 0 3 1417 428 134 0 24 chr9 109135306 109135390 -14940782 + GA-rich Low_complexity Low_complexity 3 84 0 3 1417 411 232 98 0 chr9 109135412 109135524 -14940648 + B1_Mur1 SINE Alu 27 149 0 3 1417 21 36 0 0 chr9 109135627 109135655 -14940517 + AT_rich Low_complexity Low_complexity 1 28 0 3 1417 274 45 22 22 chr9 109136963 109137008 -14939164 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 3 1417 4123 157 82 43 chr9 109137793 109138725 -14937447 + RMER17B LTR ERVK 1 958 0 3 1417 287 152 0 0 chr9 109138786 109138832 -14937340 + B1F SINE Alu 99 144 -5 3 1417 239 304 22 0 chr9 109139025 109139117 -14937055 + (CATA)n Simple_repeat Simple_repeat 1 94 0 3 1417 935 129 7 0 chr9 109139306 109139461 -14936711 + (TC)n Simple_repeat Simple_repeat 1 156 0 3 1417 608 224 27 40 chr9 109139494 109139643 -14936529 - B1_Mur1 SINE Alu -1 148 2 3 1417 405 54 0 0 chr9 109139846 109139902 -14936270 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1417 325 291 47 0 chr9 109139908 109139994 -14936178 - B1F SINE Alu -11 138 49 3 1417 801 206 0 7 chr9 109139989 109140136 -14936036 - B3 SINE B2 -68 148 3 3 1417 242 325 34 26 chr9 109140338 109140455 -14935717 - MLT1D LTR MaLR -126 379 262 3 1417 642 165 15 69 chr9 109140510 109140640 -14935532 - B1_Mur1 SINE Alu -20 129 7 3 1417 825 138 0 14 chr9 109140659 109140799 -14935373 - B1_Mus2 SINE Alu 0 147 10 3 1417 601 299 36 5 chr9 109140934 109141126 -14935046 - B3A SINE B2 0 198 1 3 1417 886 180 0 0 chr9 109141681 109141848 -14934324 + MTC LTR MaLR 1 167 -254 3 1417 478 149 6 34 chr9 109141924 109142021 -14934151 + B1_Mus2 SINE Alu 14 112 -37 3 1417 217 158 0 0 chr9 109142000 109142038 -14934134 - B3 SINE B2 -177 39 2 3 1417 207 100 0 0 chr9 109142541 109142571 -14933601 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1417 5396 69 3 30 chr9 109142784 109143506 -14932666 - L1_Mus2 LINE L1 -3 6563 5862 3 1417 14164 69 6 10 chr9 109143526 109144534 -14931638 - L1_Mus1 LINE L1 0 6567 5574 3 1417 5847 44 3 4 chr9 109144534 109145241 -14930931 - L1Md_F2 LINE L1 0 6582 5877 3 1417 14164 119 5 31 chr9 109145241 109145582 -14930590 - L1_Mus1 LINE L1 -310 5573 5232 3 1417 261 0 0 0 chr9 109145582 109145611 -14930561 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1417 14164 119 5 31 chr9 109145611 109146583 -14929589 - L1_Mus1 LINE L1 -652 5231 4277 3 1417 2403 79 52 0 chr9 109146583 109146913 -14929259 + L1_Mus1 LINE L1 6220 6566 -1 3 1417 14164 119 5 31 chr9 109146913 109147492 -14928680 - L1_Mus1 LINE L1 -1607 4276 3725 3 1417 42132 6 0 1 chr9 109147501 109154579 -14921593 - L1Md_A LINE L1 0 6582 1 3 1417 413 207 0 0 chr9 109154588 109154675 -14921497 - L1M2 LINE L1 -2402 3741 3655 3 1417 15998 117 16 17 chr9 109154675 109157766 -14918406 - L1VL4 LINE L1 -281 3536 210 3 1417 243 129 22 66 chr9 109157814 109157905 -14918267 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 3 1417 565 177 84 53 chr9 109158005 109158136 -14918036 - B1_Mus1 SINE Alu -5 143 9 3 1417 309 290 65 0 chr9 109158549 109158642 -14917530 - RSINE1 SINE B4 -10 155 57 3 1417 237 322 35 9 chr9 109159575 109159691 -14916481 + Cheshire DNA MER1_type 531 649 -1771 3 1417 1248 127 26 0 chr9 109159712 109159901 -14916271 - B2_Mm2 SINE B2 0 195 2 3 1417 535 234 35 7 chr9 109159905 109160047 -14916125 - B1_Mur3 SINE Alu -1 148 3 3 1417 355 362 0 0 chr9 109160112 109160239 -14915933 + RSINE1 SINE B4 17 143 -22 3 1417 243 351 90 0 chr9 109160266 109160377 -14915795 + B3 SINE B2 1 121 -95 3 1417 1066 153 17 0 chr9 109160711 109160887 -14915285 + B2_Mm1t SINE B2 1 179 -14 3 1417 384 155 246 17 chr9 109160953 109161071 -14915101 + B2_Mm2 SINE B2 47 191 -4 3 1417 282 304 57 29 chr9 109161079 109161184 -14914988 + PB1D9 SINE Alu 10 117 -3 3 1417 399 298 70 14 chr9 109161672 109161815 -14914357 - Tigger7 DNA MER2_type -2211 280 130 3 1417 421 167 36 73 chr9 109161865 109161975 -14914197 + MTEb LTR MaLR 271 376 -3 3 1417 591 221 53 8 chr9 109162079 109162211 -14913961 - B1_Mur2 SINE Alu -7 142 5 3 1417 469 211 33 50 chr9 109162225 109162345 -14913827 - B3 SINE B2 -2 214 97 3 1417 477 0 0 0 chr9 109162426 109162479 -14913693 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3 1417 228 273 45 0 chr9 109162489 109162555 -14913617 - Tigger7 DNA MER2_type -2394 97 29 3 1417 795 259 16 0 chr9 109162569 109162758 -14913414 - B3 SINE B2 -20 196 5 3 1417 1154 254 102 92 chr9 109163028 109163180 -14912992 + RMER17D2 LTR ERVK 1 145 -664 3 1417 828 43 17 8 chr9 109163180 109163298 -14912874 + (TCTCC)n Simple_repeat Simple_repeat 1 119 0 3 1417 2019 160 43 39 chr9 109163298 109163788 -14912384 + RMER17D2 LTR ERVK 146 762 -47 3 1417 198 0 0 0 chr9 109163788 109163810 -14912362 + (C)n Simple_repeat Simple_repeat 1 22 0 3 1417 1211 172 100 18 chr9 109163810 109163967 -14912205 + RMER17D2 LTR ERVK 722 889 0 3 1417 403 311 30 15 chr9 109164162 109164296 -14911876 - RSINE1 SINE B4 -16 149 14 3 1417 401 306 129 47 chr9 109164607 109164947 -14911225 - RLTR9A LTR ERVK 0 368 1 3 1417 758 311 27 27 chr9 109165327 109165697 -14910475 - RLTR6-int LTR ERV1 -132 7646 7277 3 1417 900 161 21 21 chr9 109165761 109165951 -14910221 - RMER16-int LTR ERVK -1706 3700 3511 3 1417 9105 151 52 17 chr9 109165936 109167604 -14908568 - RMER16-int LTR ERVK -2115 3291 1566 3 1417 301 303 51 51 chr9 109167661 109167856 -14908316 - SRV_MM-int LTR ERVK -3811 2356 2162 3 1417 755 318 5 69 chr9 109168019 109168456 -14907716 - RMER16-int LTR ERVK -3773 3471 3203 3 1417 3556 207 20 24 chr9 109168466 109169258 -14906914 - RMER16-int LTR ERVK -3780 1626 890 3 1417 1763 143 173 41 chr9 109169249 109169642 -14906530 - RMER16-int LTR ERVK -4645 761 317 3 1417 603 297 125 58 chr9 109170088 109170431 -14905741 - RLTR9A LTR ERVK 0 368 3 3 1417 4938 155 16 35 chr9 109170422 109171304 -14904868 - RMER17B LTR ERVK 0 958 96 3 1417 3029 30 73 8 chr9 109171304 109171676 -14904496 + MTA_Mm LTR MaLR 1 396 0 3 1417 4938 155 16 35 chr9 109171676 109171762 -14904410 - RMER17B LTR ERVK -863 95 8 3 1417 277 316 20 0 chr9 109171906 109172004 -14904168 - PB1D10 SINE Alu -1 116 17 3 1417 387 60 0 0 chr9 109172053 109172103 -14904069 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1417 198 0 0 0 chr9 109172103 109172125 -14904047 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1417 495 0 0 0 chr9 109172125 109172179 -14903993 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1417 466 290 47 47 chr9 109172193 109172363 -14903809 - B3 SINE B2 -46 170 1 3 1417 251 254 15 0 chr9 109172368 109172435 -14903737 - ID_B1 SINE B4 0 224 157 3 1417 763 228 135 15 chr9 109172513 109172787 -14903385 + ORR1D1 LTR MaLR 1 321 -53 3 1417 498 197 26 99 chr9 109172795 109172947 -14903225 - B1_Mus1 SINE Alu -7 141 1 3 1417 632 167 35 0 chr9 109173040 109173154 -14903018 - B3 SINE B2 -97 119 2 3 1417 23 0 0 0 chr9 109173285 109173308 -14902864 + AT_rich Low_complexity Low_complexity 1 23 0 3 1417 228 67 0 0 chr9 109173398 109173428 -14902744 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1417 463 256 42 42 chr9 109173459 109173602 -14902570 - B1_Mur3 SINE Alu -5 144 2 4 1417 227 333 99 53 chr9 109173602 109173648 -14902524 - B4 SINE B4 -201 91 39 4 1417 1040 122 17 6 chr9 109173933 109174106 -14902066 + B2_Mm2 SINE B2 1 175 -20 4 1417 438 335 0 6 chr9 109174142 109174322 -14901850 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1417 459 226 55 104 chr9 109174323 109174486 -14901686 - RSINE1 SINE B4 0 165 11 4 1417 282 224 116 45 chr9 109174635 109174747 -14901425 + PB1D7 SINE Alu 1 120 0 4 1417 25 0 0 0 chr9 109174748 109174773 -14901399 + AT_rich Low_complexity Low_complexity 1 25 0 4 1417 248 296 115 26 chr9 109175237 109175393 -14900779 + L1MDa LINE L1 1710 1879 -4754 4 1417 239 266 37 37 chr9 109175415 109175497 -14900675 + B1F SINE Alu 42 123 -26 4 1417 569 208 24 16 chr9 109175899 109176026 -14900146 - B1_Mur2 SINE Alu -6 143 16 4 1417 546 29 0 0 chr9 109176046 109176114 -14900058 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1417 315 341 55 16 chr9 109176128 109176256 -14899916 - ID_B1 SINE B4 -29 195 63 4 1417 613 198 25 0 chr9 109176373 109176494 -14899678 - B3 SINE B2 -92 124 1 4 1417 278 304 98 52 chr9 109176726 109176879 -14899293 + RSINE1 SINE B4 3 162 -3 4 1417 470 267 0 0 chr9 109177567 109177672 -14898500 + B1_Mus2 SINE Alu 43 147 0 4 1417 502 283 12 65 chr9 109177768 109177916 -14898256 - RSINE1 SINE B4 -2 163 17 4 1417 405 242 147 81 chr9 109177916 109178127 -14898045 - URR1B DNA MER1_type 0 225 1 4 1417 502 283 12 65 chr9 109178127 109178148 -14898024 - RSINE1 SINE B4 -149 16 3 4 1417 545 281 22 0 chr9 109178181 109178316 -14897856 - B1_Mur1 SINE Alu 0 149 12 4 1417 414 252 0 0 chr9 109178352 109178483 -14897689 + (TG)n Simple_repeat Simple_repeat 1 131 0 4 1417 324 0 0 0 chr9 109180060 109180096 -14896076 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1417 315 0 0 0 chr9 109180096 109180130 -14896042 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1417 570 155 10 0 chr9 109180176 109180273 -14895899 - B1_Mur4 SINE Alu -6 144 47 4 1417 485 273 30 0 chr9 109180324 109180456 -14895716 + B1_Mur1 SINE Alu 5 140 -9 4 1417 696 356 26 11 chr9 109180720 109180984 -14895188 - B4A SINE B4 -20 272 5 4 1417 443 269 43 36 chr9 109181550 109181689 -14894483 + B1F2 SINE Alu 3 142 -7 4 1417 562 205 15 30 chr9 109181715 109181846 -14894326 + B3 SINE B2 2 130 -86 4 1417 378 262 29 0 chr9 109182018 109182121 -14894051 + RSINE1 SINE B4 4 109 -56 4 1417 524 216 104 0 chr9 109182267 109182401 -14893771 - B1_Mur2 SINE Alu 0 149 2 4 1417 790 148 87 54 chr9 109182545 109182730 -14893442 + B2_Mm2 SINE B2 1 191 -4 4 1417 234 156 0 0 chr9 109182731 109182776 -14893396 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1418 308 207 0 0 chr9 109183098 109183161 -14893011 + B1F2 SINE Alu 30 92 -28 4 1418 639 225 35 0 chr9 109183345 109183487 -14892685 + B1_Mur1 SINE Alu 2 148 -1 4 1418 5702 176 8 5 chr9 109183980 109185016 -14891156 + L1_Mm LINE L1 4737 5775 -108 4 1418 4037 174 35 60 chr9 109185023 109185150 -14891022 + RMER17C-int LTR ERVK 2367 2495 -743 4 1418 651 78 0 0 chr9 109185150 109185240 -14890932 + (TA)n Simple_repeat Simple_repeat 2 91 0 4 1418 4037 174 35 60 chr9 109185240 109186005 -14890167 + RMER17C-int LTR ERVK 2496 3235 -3 4 1418 886 248 44 89 chr9 109186007 109186436 -14889736 + RMER17C LTR ERVK 1 410 0 4 1418 784 297 41 12 chr9 109186574 109186918 -14889254 + L1_Mur3 LINE L1 4009 4362 -1518 4 1418 344 246 136 24 chr9 109186941 109187066 -14889106 + B1_Mur1 SINE Alu 2 140 -9 4 1418 211 245 0 0 chr9 109187090 109187139 -14889033 + B3 SINE B2 12 60 -156 4 1418 478 281 18 36 chr9 109187374 109187540 -14888632 + B3 SINE B2 47 209 -7 4 1418 307 302 0 28 chr9 109187583 109187692 -14888480 + PB1D9 SINE Alu 4 109 -11 4 1418 272 219 0 64 chr9 109188174 109188252 -14887920 + ID_B1 SINE B4 127 199 -25 4 1418 738 34 0 0 chr9 109188253 109188342 -14887830 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 1418 395 215 20 51 chr9 109188386 109188484 -14887688 + B1_Mur1 SINE Alu 55 149 0 4 1418 397 298 33 0 chr9 109189605 109189726 -14886446 - ID_B1 SINE B4 -9 215 91 4 1418 230 174 22 0 chr9 109189906 109189952 -14886220 + GA-rich Low_complexity Low_complexity 3 49 0 4 1418 236 200 17 0 chr9 109191070 109191130 -14885042 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1418 615 218 41 27 chr9 109191223 109191369 -14884803 - B1_Mur1 SINE Alu -1 148 1 4 1418 342 0 0 0 chr9 109191565 109191603 -14884569 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1418 814 203 0 7 chr9 109191690 109191839 -14884333 - B3 SINE B2 -68 148 1 4 1418 510 171 105 26 chr9 109192260 109192374 -14883798 - B1_Mur1 SINE Alu -20 129 7 4 1418 255 61 0 0 chr9 109192383 109192416 -14883756 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 1418 598 222 14 22 chr9 109192418 109192556 -14883616 - B1_Mur4 SINE Alu -13 137 1 4 1418 480 307 30 55 chr9 109192661 109192861 -14883311 - B3A SINE B2 -3 195 1 4 1418 1000 121 14 22 chr9 109193406 109193593 -14882579 + MTC LTR MaLR 2 174 -226 4 1418 369 152 0 29 chr9 109193668 109193736 -14882436 + B1_Mus2 SINE Alu 29 94 -53 4 1418 220 154 0 0 chr9 109193727 109193766 -14882406 - B3 SINE B2 -176 40 2 4 1418 3165 63 7 5 chr9 109193989 109194403 -14881769 + L1Md_F2 LINE L1 6168 6582 0 4 1418 307 281 23 91 chr9 109194539 109194715 -14881457 + RNLTR23 LTR ERVK 479 642 0 4 1418 212 309 0 0 chr9 109195210 109195291 -14880881 + CT-rich Low_complexity Low_complexity 2 82 0 4 1418 226 170 75 0 chr9 109195230 109195283 -14880889 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 4 1418 17112 22 1 0 chr9 109195414 109198055 -14878117 - L1Md_T LINE L1 -1 6581 3939 4 1418 995 9 0 0 chr9 109198055 109198162 -14878010 - U6 snRNA snRNA 0 107 1 4 1418 737 118 85 16 chr9 109198166 109198295 -14877877 - B1_Mus1 SINE Alu -2 146 9 4 1418 353 283 56 40 chr9 109198688 109198813 -14877359 - RSINE1 SINE B4 -10 155 29 4 1418 236 267 26 26 chr9 109199141 109199218 -14876954 - Cheshire DNA MER1_type -1515 905 829 4 1418 1216 128 27 0 chr9 109199820 109200008 -14876164 - B2_Mm2 SINE B2 -1 194 2 4 1418 613 207 43 7 chr9 109200012 109200153 -14876019 - B1_Mur3 SINE Alu -1 148 3 4 1418 395 328 0 0 chr9 109200225 109200344 -14875828 + RSINE1 SINE B4 25 143 -22 4 1418 23 0 0 0 chr9 109200348 109200371 -14875801 + AT_rich Low_complexity Low_complexity 1 23 0 4 1418 246 339 71 40 chr9 109200371 109200497 -14875675 + B3A SINE B2 1 130 -65 4 1418 866 159 7 0 chr9 109200765 109200916 -14875256 + B2_Mm2 SINE B2 1 152 -43 4 1418 321 143 232 48 chr9 109200992 109201117 -14875055 + B2_Mm2 SINE B2 47 194 -1 4 1418 251 317 58 19 chr9 109201118 109201221 -14874951 + PB1D9 SINE Alu 3 109 -11 4 1418 334 356 18 35 chr9 109201721 109201890 -14874282 - MER44B DNA MER2_type -265 285 120 4 1418 383 185 42 92 chr9 109201943 109202062 -14874110 + MTEa LTR MaLR 260 372 -7 4 1418 565 237 53 8 chr9 109202167 109202299 -14873873 - B1_Mur1 SINE Alu -7 142 5 4 1418 488 198 33 49 chr9 109202314 109202436 -14873736 - B3 SINE B2 -2 214 95 4 1418 468 0 0 0 chr9 109202536 109202588 -14873584 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 4 1418 272 275 43 32 chr9 109202595 109202689 -14873483 - MER44B DNA MER2_type -454 96 2 4 1418 276 321 219 25 chr9 109202823 109203015 -14873157 + B4A SINE B4 1 230 -62 4 1418 292 331 54 0 chr9 109203015 109203145 -14873027 + RSINE1 SINE B4 3 139 -26 4 1418 27 29 0 0 chr9 109203285 109203319 -14872853 + AT_rich Low_complexity Low_complexity 1 34 0 4 1418 774 219 84 0 chr9 109203370 109203548 -14872624 - B3 SINE B2 -19 197 5 4 1418 1905 122 39 28 chr9 109203818 109204173 -14871999 + RMER17D2 LTR ERVK 1 359 -450 4 1418 23 0 0 0 chr9 109204177 109204200 -14871972 + AT_rich Low_complexity Low_complexity 1 23 0 4 1418 10256 26 0 0 chr9 109204215 109206053 -14870119 - L1Md_T LINE L1 -12 6570 4732 4 1418 38750 31 1 1 chr9 109206118 109213411 -14862761 - L1Md_T LINE L1 0 6585 1 4 1418 29577 36 0 0 chr9 109213412 109216990 -14859182 - L1Md_T LINE L1 -1137 4746 1170 4 1418 4744 134 41 48 chr9 109216996 109217898 -14858274 - L1Md_T LINE L1 -5411 1205 310 4 1418 2136 145 50 2 chr9 109217898 109218362 -14857810 + RMER17D2 LTR ERVK 324 809 0 4 1418 1798 135 20 8 chr9 109218966 109219297 -14856875 - RMER17A LTR ERVK 0 751 422 4 1418 524 15 15 0 chr9 109219297 109219362 -14856810 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1418 1545 202 29 26 chr9 109219362 109219739 -14856433 - RMER16-int LTR ERVK -3463 1943 1566 4 1418 319 297 53 42 chr9 109219796 109219986 -14856186 - SRV_MM-int LTR ERVK -3811 2356 2165 4 1418 752 276 5 96 chr9 109220054 109220585 -14855587 - MMETn-int LTR ERVK -1658 1656 1264 4 1418 3577 201 23 27 chr9 109220644 109221390 -14854782 - RMER16-int LTR ERVK -3774 1632 890 4 1418 1523 167 113 17 chr9 109221412 109221777 -14854395 - RMER16-int LTR ERVK -4740 666 295 4 1418 557 317 111 47 chr9 109222223 109222567 -14853605 - RLTR9A LTR ERVK 0 368 3 4 1418 4639 168 25 35 chr9 109222558 109223432 -14852740 - RMER17B LTR ERVK 0 958 96 4 1418 3029 30 73 8 chr9 109223432 109223804 -14852368 + MTA_Mm LTR MaLR 1 396 0 4 1418 4639 168 25 35 chr9 109223804 109223890 -14852282 - RMER17B LTR ERVK -863 95 8 4 1418 283 316 20 0 chr9 109224034 109224132 -14852040 - PB1D10 SINE Alu -1 116 17 4 1418 378 0 0 0 chr9 109224181 109224223 -14851949 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1418 454 277 65 55 chr9 109224224 109224238 -14851934 - B3 SINE B2 -15 201 188 4 1418 369 0 0 0 chr9 109224238 109224279 -14851893 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1418 454 277 65 55 chr9 109224279 109224463 -14851709 - B3 SINE B2 -29 187 1 4 1418 251 254 15 0 chr9 109224468 109224535 -14851637 - ID_B1 SINE B4 0 224 157 4 1418 723 228 139 20 chr9 109224615 109224889 -14851283 + ORR1D1 LTR MaLR 1 321 -53 5 1418 498 197 26 99 chr9 109224897 109225049 -14851123 - B1_Mus1 SINE Alu -7 141 1 5 1418 632 167 35 0 chr9 109225142 109225256 -14850916 - B3 SINE B2 -97 119 2 5 1418 24 0 0 0 chr9 109225387 109225411 -14850761 + AT_rich Low_complexity Low_complexity 1 24 0 5 1418 273 57 0 0 chr9 109225501 109225536 -14850636 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1418 463 256 42 42 chr9 109225568 109225711 -14850461 - B1_Mur3 SINE Alu -5 144 2 5 1418 1040 122 17 6 chr9 109226044 109226217 -14849955 + B2_Mm2 SINE B2 1 175 -20 5 1418 473 335 0 0 chr9 109226253 109226432 -14849740 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1418 450 231 48 120 chr9 109226433 109226600 -14849572 - RSINE1 SINE B4 0 165 11 5 1418 267 234 116 45 chr9 109226749 109226861 -14849311 + PB1D7 SINE Alu 1 120 0 5 1418 25 0 0 0 chr9 109226862 109226887 -14849285 + AT_rich Low_complexity Low_complexity 1 25 0 5 1418 295 276 115 26 chr9 109227350 109227506 -14848666 + L1MDa LINE L1 1710 1879 -4754 5 1418 239 266 37 37 chr9 109227528 109227610 -14848562 + B1F SINE Alu 42 123 -26 5 1418 559 216 24 16 chr9 109228012 109228139 -14848033 - B1_Mur2 SINE Alu -6 143 16 5 1418 432 0 0 0 chr9 109228157 109228205 -14847967 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1418 315 341 55 16 chr9 109228219 109228347 -14847825 - ID_B1 SINE B4 -29 195 63 5 1418 613 198 25 0 chr9 109228464 109228585 -14847587 - B3 SINE B2 -92 124 1 5 1418 262 304 105 52 chr9 109228817 109228970 -14847202 + RSINE1 SINE B4 2 162 -3 5 1418 470 267 0 0 chr9 109229657 109229762 -14846410 + B1_Mus2 SINE Alu 43 147 0 5 1418 500 293 13 20 chr9 109229858 109230006 -14846166 - RSINE1 SINE B4 -2 163 17 5 1418 386 223 6 109 chr9 109230006 109230162 -14846010 - URR1B DNA MER1_type 0 225 86 5 1418 524 289 22 0 chr9 109230271 109230406 -14845766 - B1_Mur1 SINE Alu 0 149 12 5 1418 339 250 0 0 chr9 109230466 109230566 -14845606 + (TG)n Simple_repeat Simple_repeat 1 100 0 5 1418 180 0 0 0 chr9 109231239 109231259 -14844913 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1418 198 0 0 0 chr9 109232147 109232169 -14844003 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1418 324 0 0 0 chr9 109232169 109232204 -14843968 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1418 570 155 10 0 chr9 109232253 109232350 -14843822 - B1_Mur4 SINE Alu -6 144 47 5 1418 485 273 30 0 chr9 109232401 109232533 -14843639 + B1_Mur1 SINE Alu 5 140 -9 5 1418 677 360 26 11 chr9 109232797 109233061 -14843111 - B4A SINE B4 -20 272 5 5 1418 445 269 43 36 chr9 109233622 109233761 -14842411 + B1F2 SINE Alu 3 142 -7 5 1418 562 205 15 30 chr9 109233787 109233918 -14842254 + B3 SINE B2 2 130 -86 5 1418 401 252 29 0 chr9 109234090 109234193 -14841979 + RSINE1 SINE B4 4 109 -56 5 1418 555 224 90 0 chr9 109234326 109234460 -14841712 - B1_Mus2 SINE Alu 0 147 2 5 1418 761 154 87 54 chr9 109234608 109234793 -14841379 + B2_Mm2 SINE B2 1 191 -4 5 1418 216 163 0 0 chr9 109234794 109234837 -14841335 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1418 308 207 0 0 chr9 109235160 109235223 -14840949 + B1F2 SINE Alu 30 92 -28 5 1418 639 225 35 0 chr9 109235407 109235549 -14840623 + B1_Mur1 SINE Alu 2 148 -1 5 1418 5771 172 7 11 chr9 109236042 109237102 -14839070 + L1_Mm LINE L1 4737 5791 -92 5 1418 3401 200 50 34 chr9 109237105 109238022 -14838150 + RMER17C-int LTR ERVK 2319 3236 -2 5 1418 886 243 44 89 chr9 109238024 109238453 -14837719 + RMER17C LTR ERVK 1 410 0 5 1418 782 300 40 9 chr9 109238590 109238936 -14837236 + L1_Mur3 LINE L1 4006 4362 -1518 5 1418 358 238 136 24 chr9 109238959 109239084 -14837088 + B1_Mur1 SINE Alu 2 140 -9 5 1418 211 245 0 0 chr9 109239108 109239157 -14837015 + B3 SINE B2 12 60 -156 5 1418 478 281 18 36 chr9 109239392 109239558 -14836614 + B3 SINE B2 47 209 -7 5 1418 307 302 0 28 chr9 109239601 109239710 -14836462 + PB1D9 SINE Alu 4 109 -11 5 1418 272 219 0 64 chr9 109240192 109240270 -14835902 + ID_B1 SINE B4 127 199 -25 5 1418 567 43 0 0 chr9 109240271 109240341 -14835831 + (GA)n Simple_repeat Simple_repeat 2 71 0 5 1418 395 215 20 51 chr9 109240382 109240480 -14835692 + B1_Mur1 SINE Alu 55 149 0 5 1418 397 298 33 0 chr9 109241592 109241713 -14834459 - ID_B1 SINE B4 -9 215 91 5 1418 230 174 22 0 chr9 109241889 109241935 -14834237 + GA-rich Low_complexity Low_complexity 3 49 0 5 1418 208 273 10 10 chr9 109243012 109243112 -14833060 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 1418 631 211 41 34 chr9 109243206 109243353 -14832819 - B1_Mur1 SINE Alu -1 148 1 5 1418 393 22 0 0 chr9 109243549 109243595 -14832577 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1418 786 216 0 7 chr9 109243682 109243831 -14832341 - B3 SINE B2 -68 148 1 5 1418 592 174 16 32 chr9 109244253 109244378 -14831794 - B1_Mur1 SINE Alu -20 129 7 5 1418 300 53 0 0 chr9 109244387 109244425 -14831747 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1418 598 222 14 22 chr9 109244427 109244565 -14831607 - B1_Mur4 SINE Alu -13 137 1 5 1418 469 312 30 45 chr9 109244670 109244868 -14831304 - B3A SINE B2 -3 195 1 5 1418 1000 121 14 22 chr9 109245413 109245600 -14830572 + MTC LTR MaLR 2 174 -226 5 1418 369 152 0 29 chr9 109245674 109245742 -14830430 + B1_Mus2 SINE Alu 29 94 -53 5 1418 220 154 0 0 chr9 109245733 109245772 -14830400 - B3 SINE B2 -176 40 2 5 1418 3167 65 7 5 chr9 109245969 109246387 -14829785 + L1Md_F2 LINE L1 6164 6582 0 5 1418 311 290 11 69 chr9 109246523 109246697 -14829475 + RNLTR23 LTR ERVK 479 642 0 5 1418 212 309 0 0 chr9 109247192 109247273 -14828899 + CT-rich Low_complexity Low_complexity 2 82 0 5 1418 226 170 75 0 chr9 109247212 109247265 -14828907 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 5 1418 16987 25 1 0 chr9 109247395 109250037 -14826135 - L1Md_T LINE L1 -1 6581 3939 5 1418 995 9 0 0 chr9 109250037 109250144 -14826028 - U6 snRNA snRNA 0 107 1 5 1418 737 118 85 16 chr9 109250148 109250277 -14825895 - B1_Mus1 SINE Alu -2 146 9 5 1418 353 283 56 40 chr9 109250670 109250795 -14825377 - RSINE1 SINE B4 -10 155 29 5 1418 236 267 26 26 chr9 109251123 109251200 -14824972 - Cheshire DNA MER1_type -1515 905 829 5 1418 1216 128 27 0 chr9 109251802 109251990 -14824182 - B2_Mm2 SINE B2 -1 194 2 5 1418 627 200 43 7 chr9 109251994 109252135 -14824037 - B1_Mur3 SINE Alu -1 148 3 5 1418 417 319 0 0 chr9 109252207 109252326 -14823846 + RSINE1 SINE B4 25 143 -22 5 1418 23 0 0 0 chr9 109252330 109252353 -14823819 + AT_rich Low_complexity Low_complexity 1 23 0 5 1418 246 339 71 40 chr9 109252353 109252479 -14823693 + B3A SINE B2 1 130 -65 5 1418 866 159 7 0 chr9 109252747 109252898 -14823274 + B2_Mm2 SINE B2 1 152 -43 5 1418 326 142 230 48 chr9 109252974 109253100 -14823072 + B2_Mm2 SINE B2 47 195 0 5 1418 236 327 58 19 chr9 109253101 109253204 -14822968 + PB1D9 SINE Alu 3 109 -11 5 1418 326 362 18 35 chr9 109253704 109253873 -14822299 - MER44B DNA MER2_type -265 285 120 5 1418 387 221 32 81 chr9 109253926 109254049 -14822123 + MTEb LTR MaLR 260 376 -3 5 1418 580 229 53 8 chr9 109254150 109254282 -14821890 - B1_Mur2 SINE Alu -7 142 5 5 1418 488 198 33 49 chr9 109254297 109254419 -14821753 - B3 SINE B2 -2 214 95 5 1418 432 0 0 0 chr9 109254519 109254567 -14821605 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 5 1418 272 275 43 32 chr9 109254574 109254668 -14821504 - MER44B DNA MER2_type -454 96 2 5 1418 290 316 219 25 chr9 109254802 109254994 -14821178 + B4A SINE B4 1 230 -62 5 1418 268 349 62 0 chr9 109254994 109255123 -14821049 + RSINE1 SINE B4 3 139 -26 5 1418 774 219 84 0 chr9 109255348 109255526 -14820646 - B3 SINE B2 -19 197 5 5 1418 1920 127 39 31 chr9 109255796 109256154 -14820018 + RMER17D2 LTR ERVK 1 361 -448 5 1418 23 0 0 0 chr9 109256157 109256180 -14819992 + AT_rich Low_complexity Low_complexity 1 23 0 5 1418 10273 25 0 1 chr9 109256189 109258032 -14818140 - L1Md_T LINE L1 -10 6572 4732 5 1418 17064 16 1 1 chr9 109258096 109260742 -14815430 - L1Md_T LINE L1 0 6582 3939 5 1418 995 9 0 0 chr9 109260742 109260849 -14815323 - U6 snRNA snRNA 0 107 1 5 1418 737 118 85 16 chr9 109260853 109260982 -14815190 - B1_Mus1 SINE Alu -2 146 9 5 1418 353 283 56 40 chr9 109261377 109261502 -14814670 - RSINE1 SINE B4 -10 155 29 5 1418 236 267 26 26 chr9 109261830 109261907 -14814265 - Cheshire DNA MER1_type -1515 905 829 5 1418 1216 128 27 0 chr9 109262509 109262697 -14813475 - B2_Mm2 SINE B2 -1 194 2 5 1418 613 207 43 7 chr9 109262701 109262842 -14813330 - B1_Mur3 SINE Alu -1 148 3 5 1418 395 328 0 0 chr9 109262914 109263033 -14813139 + RSINE1 SINE B4 25 143 -22 5 1418 23 0 0 0 chr9 109263037 109263060 -14813112 + AT_rich Low_complexity Low_complexity 1 23 0 5 1418 249 339 80 0 chr9 109263060 109263172 -14813000 + B3 SINE B2 1 121 -95 5 1418 28 29 0 0 chr9 109263404 109263439 -14812733 + AT_rich Low_complexity Low_complexity 1 35 0 5 1418 38697 30 0 0 chr9 109263439 109270081 -14806091 - L1Md_T LINE L1 0 6585 2 5 1418 813 155 27 0 chr9 109270122 109270270 -14805902 + B2_Mm2 SINE B2 1 152 -43 5 1418 326 142 230 48 chr9 109270346 109270472 -14805700 + B2_Mm2 SINE B2 47 195 0 6 1418 236 327 58 19 chr9 109270473 109270576 -14805596 + PB1D9 SINE Alu 3 109 -11 6 1418 326 362 18 35 chr9 109271077 109271246 -14804926 - MER44B DNA MER2_type -265 285 120 6 1418 387 221 32 81 chr9 109271299 109271422 -14804750 + MTEb LTR MaLR 260 376 -3 6 1418 565 237 53 8 chr9 109271523 109271655 -14804517 - B1_Mur1 SINE Alu -7 142 5 6 1418 488 198 33 49 chr9 109271670 109271792 -14804380 - B3 SINE B2 -2 214 95 6 1418 432 0 0 0 chr9 109271892 109271940 -14804232 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 6 1418 272 275 43 32 chr9 109271947 109272041 -14804131 - MER44B DNA MER2_type -454 96 2 6 1418 290 230 54 0 chr9 109272297 109272367 -14803805 + B4A SINE B4 157 230 -62 6 1418 292 331 54 0 chr9 109272367 109272497 -14803675 + RSINE1 SINE B4 3 139 -26 6 1418 28 29 0 0 chr9 109272637 109272672 -14803500 + AT_rich Low_complexity Low_complexity 1 35 0 6 1418 774 219 84 0 chr9 109272723 109272901 -14803271 - B3 SINE B2 -19 197 5 6 1418 3978 128 108 15 chr9 109273171 109273523 -14802649 + RMER17D2 LTR ERVK 1 379 -430 6 1418 1163 94 6 0 chr9 109273523 109273694 -14802478 + (TCTCC)n Simple_repeat Simple_repeat 2 173 0 6 1418 3978 128 108 15 chr9 109273694 109273735 -14802437 + RMER17D2 LTR ERVK 380 452 -357 6 1418 1440 29 0 0 chr9 109273735 109273908 -14802264 + (TCTCCC)n Simple_repeat Simple_repeat 3 175 0 6 1418 3978 128 108 15 chr9 109273908 109274253 -14801919 + RMER17D2 LTR ERVK 453 807 -2 6 1418 1798 135 20 8 chr9 109274857 109275188 -14800984 - RMER17A LTR ERVK 0 751 422 6 1418 470 17 17 0 chr9 109275188 109275247 -14800925 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1418 1545 202 29 26 chr9 109275247 109275624 -14800548 - RMER16-int LTR ERVK -3463 1943 1566 6 1418 319 297 53 42 chr9 109275681 109275871 -14800301 - SRV_MM-int LTR ERVK -3811 2356 2165 6 1418 752 276 5 96 chr9 109275939 109276470 -14799702 - MMETn-int LTR ERVK -1658 1656 1264 6 1418 3613 198 23 25 chr9 109276529 109277274 -14798898 - RMER16-int LTR ERVK -3774 1632 890 6 1418 1627 171 152 28 chr9 109277263 109277659 -14798513 - RMER16-int LTR ERVK -4643 763 319 6 1418 213 205 0 0 chr9 109277689 109277728 -14798444 + CT-rich Low_complexity Low_complexity 2 40 0 6 1418 455 233 29 19 chr9 109278068 109278173 -14797999 - RMER17B LTR ERVK -287 671 566 6 1418 559 302 138 57 chr9 109278221 109278555 -14797617 - RLTR9A LTR ERVK 0 368 8 6 1418 5095 158 29 30 chr9 109278559 109279514 -14796658 - RMER17B LTR ERVK -4 954 1 6 1418 189 107 0 0 chr9 109279802 109279830 -14796342 + (TATG)n Simple_repeat Simple_repeat 3 30 0 6 1418 566 236 56 6 chr9 109279847 109280009 -14796163 - B3 SINE B2 -46 170 1 6 1418 254 182 55 0 chr9 109280013 109280068 -14796104 - PB1D10 SINE Alu -1 116 59 6 1418 698 252 207 8 chr9 109280159 109280415 -14795757 + ORR1D1 LTR MaLR 1 307 -67 6 1418 438 222 40 106 chr9 109280437 109280588 -14795584 - B1_Mus1 SINE Alu -7 141 1 6 1418 642 140 35 9 chr9 109280666 109280781 -14795391 - B3 SINE B2 -97 119 2 6 1418 256 179 133 31 chr9 109280814 109280912 -14795260 + Lx9 LINE L1 7531 7638 -6 6 1418 23 0 0 0 chr9 109280913 109280936 -14795236 + AT_rich Low_complexity Low_complexity 1 23 0 6 1418 227 299 30 0 chr9 109280961 109281028 -14795144 - 7SK RNA RNA -250 81 13 6 1418 497 248 21 28 chr9 109281074 109281219 -14794953 - B1_Mus2 SINE Alu -2 145 2 6 1418 236 318 78 110 chr9 109281219 109281265 -14794907 - B4 SINE B4 -69 223 39 6 1418 1068 131 0 6 chr9 109281550 109281726 -14794446 + B2_Mm2 SINE B2 1 175 -20 6 1418 495 317 0 22 chr9 109281762 109281946 -14794226 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1418 393 208 89 0 chr9 109281989 109282090 -14794082 - RSINE1 SINE B4 -45 120 11 6 1418 346 222 106 44 chr9 109282239 109282352 -14793820 + PB1D7 SINE Alu 1 120 0 6 1418 301 253 25 0 chr9 109282954 109283033 -14793139 + L1MDa LINE L1 1799 1879 -4754 6 1418 242 254 45 0 chr9 109283068 109283135 -14793037 + ID_B1 SINE B4 130 199 -25 6 1418 590 200 24 16 chr9 109283539 109283666 -14792506 - B1_Mur2 SINE Alu -6 143 16 6 1418 414 0 0 0 chr9 109283684 109283730 -14792442 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1418 315 341 55 16 chr9 109283744 109283872 -14792300 - ID_B1 SINE B4 -29 195 63 6 1418 613 198 25 0 chr9 109283989 109284110 -14792062 - B3 SINE B2 -92 124 1 6 1418 277 304 98 52 chr9 109284346 109284499 -14791673 + RSINE1 SINE B4 3 162 -3 6 1418 503 248 0 0 chr9 109285145 109285250 -14790922 + B1_Mus2 SINE Alu 43 147 0 6 1418 489 279 13 26 chr9 109285346 109285495 -14790677 - RSINE1 SINE B4 -2 163 17 6 1418 469 187 6 109 chr9 109285495 109285651 -14790521 - URR1B DNA MER1_type 0 225 86 6 1418 518 296 22 0 chr9 109285760 109285895 -14790277 - B1_Mur1 SINE Alu 0 149 12 6 1418 600 242 0 0 chr9 109285953 109286225 -14789947 + (TG)n Simple_repeat Simple_repeat 1 272 0 6 1418 306 0 0 0 chr9 109287840 109287874 -14788298 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1418 600 129 0 0 chr9 109287874 109287998 -14788174 + (GA)n Simple_repeat Simple_repeat 2 125 0 6 1418 609 137 11 0 chr9 109288063 109288158 -14788014 - B1_Mur3 SINE Alu -8 141 46 6 1418 245 210 161 69 chr9 109288090 109288177 -14787995 - MT2B LTR ERVL -337 264 170 6 1418 505 260 15 23 chr9 109288206 109288336 -14787836 + B1_Mur1 SINE Alu 12 140 -9 6 1418 824 317 26 15 chr9 109288604 109288873 -14787299 - B4A SINE B4 -20 272 1 6 1418 443 269 43 36 chr9 109289420 109289559 -14786613 + B1F2 SINE Alu 3 142 -7 6 1418 526 220 15 30 chr9 109289585 109289716 -14786456 + B3 SINE B2 2 130 -86 6 1418 417 252 29 0 chr9 109289888 109289991 -14786181 + RSINE1 SINE B4 4 109 -56 6 1418 324 0 0 0 chr9 109290097 109290133 -14786039 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 6 1418 518 216 104 0 chr9 109290146 109290280 -14785892 - B1_Mur2 SINE Alu 0 149 2 6 1418 810 149 87 49 chr9 109290424 109290607 -14785565 + B2_Mm2 SINE B2 1 190 -5 6 1418 315 230 3 50 chr9 109290922 109291025 -14785147 + B1F2 SINE Alu 2 95 -54 6 1418 480 210 186 0 chr9 109291204 109291328 -14784844 + B1_Mur2 SINE Alu 2 148 -1 6 1418 33432 77 18 2 chr9 109291421 109296191 -14779981 + L1Md_F2 LINE L1 398 5234 -649 6 1418 342 0 0 0 chr9 109296191 109296229 -14779943 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1418 33432 67 6 1 chr9 109296229 109296566 -14779606 + L1Md_F2 LINE L1 5235 5585 -298 6 1418 7967 60 0 2 chr9 109296567 109297563 -14778609 + L1Md_F2 LINE L1 5588 6581 -1 6 1418 4687 75 2 13 chr9 109297582 109298184 -14777988 + L1_Mm LINE L1 4984 5586 -297 6 1418 7527 77 11 5 chr9 109298184 109299174 -14776998 + L1Md_F2 LINE L1 5587 6582 0 6 1418 4687 75 2 13 chr9 109299174 109299194 -14776978 + L1_Mm LINE L1 5587 5599 -284 6 1418 5062 149 5 22 chr9 109299566 109300431 -14775741 + L1_Mm LINE L1 4737 5586 -297 6 1418 8999 13 0 0 chr9 109300431 109301427 -14774745 + L1Md_A LINE L1 5587 6582 0 6 1418 2641 146 2 7 chr9 109301427 109301848 -14774324 + L1_Mm LINE L1 5357 5775 -108 6 1418 3995 176 38 61 chr9 109301855 109302745 -14773427 + RMER17C-int LTR ERVK 2367 3236 -2 6 1418 921 235 52 76 chr9 109302747 109303167 -14773005 + RMER17C LTR ERVK 1 410 0 6 1418 239 233 174 0 chr9 109303184 109303270 -14772902 + RMER10A LTR ERVL 315 415 -27 6 1418 747 307 44 6 chr9 109303302 109303646 -14772526 + L1_Mur3 LINE L1 4006 4362 -1518 6 1418 384 233 109 58 chr9 109303669 109303806 -14772366 + B1_Mus2 SINE Alu 2 145 -2 6 1418 310 273 20 10 chr9 109303821 109303921 -14772251 + B3A SINE B2 12 112 -86 6 1418 232 286 0 0 chr9 109303984 109304061 -14772111 + L1M2 LINE L1 4395 4471 -1672 6 1418 514 296 6 30 chr9 109304084 109304251 -14771921 + B3 SINE B2 47 209 -7 6 1418 341 265 8 89 chr9 109304303 109304427 -14771745 + PB1D9 SINE Alu 7 120 0 6 1418 348 24 0 0 chr9 109304774 109304815 -14771357 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1418 312 262 0 59 chr9 109304921 109305006 -14771166 + ID_B1 SINE B4 127 206 -18 6 1418 349 225 57 29 chr9 109304990 109305113 -14771059 + B1_Mur1 SINE Alu 20 149 0 6 1418 411 289 33 0 chr9 109306230 109306351 -14769821 - ID_B1 SINE B4 -9 215 91 6 1418 197 139 23 0 chr9 109306530 109306573 -14769599 + GA-rich Low_complexity Low_complexity 3 46 0 6 1418 304 300 59 37 chr9 109307849 109307984 -14768188 - RSINE1 SINE B4 -10 155 18 6 1418 255 280 61 53 chr9 109308231 109308363 -14767809 - Cheshire DNA MER1_type -1459 961 829 6 1418 235 309 45 18 chr9 109308854 109308966 -14767206 + Cheshire DNA MER1_type 535 649 -1771 6 1418 1143 143 26 0 chr9 109308976 109309165 -14767007 - B2_Mm2 SINE B2 0 195 2 6 1418 627 200 43 7 chr9 109309169 109309310 -14766862 - B1_Mur3 SINE Alu -1 148 3 6 1418 410 331 0 0 chr9 109309375 109309502 -14766670 + RSINE1 SINE B4 17 143 -22 6 1418 23 0 0 0 chr9 109309506 109309529 -14766643 + AT_rich Low_complexity Low_complexity 1 23 0 6 1418 263 342 90 0 chr9 109309529 109309640 -14766532 + B3 SINE B2 1 121 -95 6 1418 857 196 35 0 chr9 109309974 109310147 -14766025 + B2_Mm1t SINE B2 1 179 -14 6 1418 295 114 296 20 chr9 109310223 109310321 -14765851 + B2_Mm2 SINE B2 62 186 -9 6 1418 217 343 59 29 chr9 109310330 109310432 -14765740 + PB1D9 SINE Alu 5 109 -11 6 1418 299 346 12 25 chr9 109310927 109311087 -14765085 - Tigger7 DNA MER2_type -2205 286 129 6 1418 360 239 32 81 chr9 109311148 109311271 -14764901 + MTEb LTR MaLR 260 376 -3 6 1418 579 228 66 7 chr9 109311367 109311504 -14764668 - B1_Mur2 SINE Alu 0 149 5 6 1418 484 194 35 53 chr9 109311518 109311632 -14764540 - B3 SINE B2 -2 214 103 6 1418 237 98 0 0 chr9 109311721 109311762 -14764410 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 7 1418 295 264 43 32 chr9 109311772 109311866 -14764306 - Tigger7 DNA MER2_type -2394 97 3 6 1418 267 332 219 25 chr9 109312000 109312196 -14763976 + B4A SINE B4 1 234 -58 7 1418 21 57 0 0 chr9 109312457 109312492 -14763680 + AT_rich Low_complexity Low_complexity 1 35 0 7 1418 617 243 87 0 chr9 109312557 109312730 -14763442 - B3 SINE B2 -24 192 5 7 1418 4570 8 0 0 chr9 109312981 109313474 -14762698 + MT2_Mm LTR ERVL 1 493 0 7 177 2874 132 60 18 chr9 109313498 109314068 -14762104 + RMER17D2 LTR ERVK 1 594 -215 7 1419 1520 149 11 7 chr9 109314348 109314619 -14761553 - RMER17A LTR ERVK 0 751 480 7 1419 7281 167 58 42 chr9 109314620 109316002 -14760170 - RMER16-int LTR ERVK -2309 3097 1675 7 1419 4433 111 0 37 chr9 109316002 109316679 -14759493 - L1Md_F2 LINE L1 -1 6581 5930 7 1419 7281 167 58 42 chr9 109316679 109316804 -14759368 - RMER16-int LTR ERVK -3732 1674 1566 7 1419 387 219 50 50 chr9 109316939 109317059 -14759113 - SRV_MM-int LTR ERVK -3890 2277 2158 7 1419 8005 65 4 2 chr9 109317090 109318817 -14757355 - L1Md_F2 LINE L1 -2 6580 4850 7 1419 1852 26 1 7 chr9 109318817 109319071 -14757101 + LTRIS_Mm LTR ERV1 1 427 -315 7 1419 8713 40 2 0 chr9 109319071 109320829 -14755343 - L1Md_T LINE L1 -2 6580 4818 7 1419 4376 19 0 0 chr9 109320829 109321311 -14754861 + LTRIS_Mm LTR ERV1 1 482 0 7 1419 34067 59 21 25 chr9 109321311 109325882 -14750290 + MuRRS-int LTR ERV1 1 4690 0 7 1419 4338 23 0 0 chr9 109325882 109326364 -14749808 + LTRIS_Mm LTR ERV1 1 482 0 7 1419 23002 63 12 1 chr9 109326364 109329355 -14746817 - L1Md_T LINE L1 -1062 4821 1799 7 1419 889 283 10 55 chr9 109329394 109329938 -14746234 - RLTR45-int LTR ERVK -3773 3471 3231 7 1419 4922 201 68 61 chr9 109330002 109331279 -14744893 - RMER16-int LTR ERVK -3808 1598 313 7 1419 479 305 137 62 chr9 109331735 109332071 -14744101 - RLTR9A LTR ERVK 0 368 8 7 1419 5219 162 10 35 chr9 109332071 109333053 -14743119 - RMER17B LTR ERVK 0 958 1 7 1419 250 336 19 0 chr9 109333202 109333306 -14742866 - PB1D10 SINE Alu -1 116 11 7 1419 378 0 0 0 chr9 109333340 109333382 -14742790 + (TATG)n Simple_repeat Simple_repeat 3 44 0 7 1419 626 229 91 0 chr9 109333386 109333561 -14742611 - B3 SINE B2 -25 191 1 7 1419 742 238 109 5 chr9 109333714 109333925 -14742247 + ORR1D1 LTR MaLR 1 233 -141 7 1419 488 204 26 99 chr9 109333989 109334141 -14742031 - B1_Mus1 SINE Alu -7 141 1 7 1419 438 69 0 0 chr9 109334150 109334208 -14741964 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1419 676 178 0 0 chr9 109334265 109334383 -14741789 - B3 SINE B2 -97 119 2 7 1419 21 36 0 0 chr9 109334508 109334536 -14741636 + AT_rich Low_complexity Low_complexity 1 28 0 7 1419 256 322 23 11 chr9 109334552 109334640 -14741532 - 7SK RNA RNA -241 90 2 7 1419 522 221 56 28 chr9 109334650 109334794 -14741378 - B1_Mur1 SINE Alu 0 149 2 7 1419 298 316 70 92 chr9 109334794 109334840 -14741332 - B4 SINE B4 -212 80 39 7 1419 1206 119 0 6 chr9 109335140 109335317 -14740855 + B2_Mm2 SINE B2 1 176 -19 7 1419 213 261 0 0 chr9 109335350 109335438 -14740734 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 1419 382 280 21 70 chr9 109335504 109335646 -14740526 - RSINE1 SINE B4 0 165 31 7 1419 247 280 172 23 chr9 109335814 109335887 -14740285 + PB1 SINE Alu 1 147 -2 7 1419 269 154 0 55 chr9 109335887 109335942 -14740230 + ID_B1 SINE B4 171 222 -2 7 1419 269 292 122 7 chr9 109336477 109336625 -14739547 + L1MDa LINE L1 1715 1879 -4754 7 1419 233 279 57 29 chr9 109336692 109336762 -14739410 + ID_B1 SINE B4 145 216 -8 7 1419 353 258 10 20 chr9 109336802 109336901 -14739271 + L1M3 LINE L1 4672 4769 -1374 7 1419 445 314 70 53 chr9 109336977 109337276 -14738896 + L1M3 LINE L1 4880 5183 -957 7 1419 404 315 3 27 chr9 109337372 109337499 -14738673 - B1F SINE Alu -10 139 13 7 1419 391 191 148 28 chr9 109337595 109337703 -14738469 + B1_Mur4 SINE Alu 15 135 -15 7 1419 555 227 23 15 chr9 109338079 109338209 -14737963 - B1_Mur2 SINE Alu -6 143 13 7 1419 192 40 0 0 chr9 109338228 109338253 -14737919 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 7 1419 312 298 96 32 chr9 109338268 109338393 -14737779 - ID_B1 SINE B4 -29 195 63 7 1419 701 194 0 0 chr9 109338506 109338630 -14737542 - B3 SINE B2 -92 124 1 7 1419 265 289 89 16 chr9 109338866 109338989 -14737183 + RSINE1 SINE B4 3 134 -31 7 1419 23 33 0 0 chr9 109339034 109339064 -14737108 + AT_rich Low_complexity Low_complexity 1 30 0 7 1419 424 254 42 0 chr9 109339696 109339814 -14736358 + B1_Mus2 SINE Alu 25 147 0 7 1419 524 279 13 20 chr9 109339910 109340058 -14736114 - RSINE1 SINE B4 -2 163 17 7 1419 421 211 6 107 chr9 109340058 109340217 -14735955 - URR1B DNA MER1_type 0 225 83 7 1419 585 226 37 8 chr9 109340322 109340456 -14735716 - B1_Mur1 SINE Alu 0 149 12 7 1419 235 273 0 0 chr9 109340495 109340550 -14735622 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1419 2359 68 108 6 chr9 109341398 109341722 -14734450 - IAPEY2_LTR LTR ERVK 0 357 1 7 1419 186 43 0 0 chr9 109342399 109342422 -14733750 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1419 630 0 0 0 chr9 109342422 109342491 -14733681 + (GA)n Simple_repeat Simple_repeat 1 70 0 7 1419 528 167 21 0 chr9 109342555 109342651 -14733521 - B1_Mur4 SINE Alu -6 144 47 7 1419 553 269 15 0 chr9 109342702 109342836 -14733336 + B1_Mur1 SINE Alu 5 140 -9 7 1419 715 347 26 15 chr9 109343101 109343370 -14732802 - B4A SINE B4 -16 276 5 7 1419 388 321 28 7 chr9 109343920 109344061 -14732111 + B1F2 SINE Alu 5 148 -1 7 1419 626 227 196 17 chr9 109344070 109344249 -14731923 + B3 SINE B2 2 212 -4 7 1419 264 226 0 46 chr9 109344318 109344383 -14731789 + B1F2 SINE Alu 34 95 -54 7 1419 588 239 36 0 chr9 109344563 109344701 -14731471 + B1_Mur1 SINE Alu 7 149 0 7 1419 5386 182 23 9 chr9 109345181 109346224 -14729948 + L1_Mm LINE L1 4718 5775 -108 7 1419 597 163 7 49 chr9 109346231 109346373 -14729799 + RMER17C-int LTR ERVK 2367 2502 -736 7 1419 343 159 61 0 chr9 109346373 109346505 -14729667 + (TA)n Simple_repeat Simple_repeat 2 141 0 7 1419 3687 167 50 17 chr9 109346508 109347228 -14728944 + RMER17C-int LTR ERVK 2493 3236 -2 7 1419 571 232 44 49 chr9 109347230 109347760 -14728412 + RMER17C LTR ERVK 1 410 0 7 1419 656 309 63 6 chr9 109347900 109348235 -14727937 + L1_Mur3 LINE L1 4009 4362 -1518 7 1419 389 264 109 58 chr9 109348258 109348395 -14727777 + B1_Mus2 SINE Alu 2 145 -2 7 1419 314 255 3 0 chr9 109348410 109348497 -14727675 + B3A SINE B2 12 99 -117 7 1419 513 279 12 36 chr9 109348666 109348833 -14727339 + B3 SINE B2 47 209 -7 7 1419 235 340 0 28 chr9 109348882 109348988 -14727184 + PB1D9 SINE Alu 7 109 -11 7 1419 320 235 0 76 chr9 109349472 109349564 -14726608 + ID_B1 SINE B4 127 211 -13 7 1419 351 44 0 0 chr9 109349564 109349609 -14726563 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1419 1038 17 0 0 chr9 109349609 109349729 -14726443 + (GAA)n Simple_repeat Simple_repeat 1 120 0 7 1419 337 250 2 5 chr9 109349758 109349858 -14726314 + B1_Mur1 SINE Alu 49 149 0 7 1419 256 269 60 0 chr9 109349880 109349947 -14726225 + RSINE1 SINE B4 92 162 -3 7 1419 281 311 76 0 chr9 109350982 109351114 -14725058 - B1F1 SINE Alu -2 147 6 7 1419 858 83 0 0 chr9 109351300 109351420 -14724752 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 7 1419 3449 152 40 24 chr9 109352834 109353806 -14722366 - RLTR13D1 LTR ERVK -58 965 1 7 1419 791 145 3 22 chr9 109353806 109353967 -14722205 + MTC LTR MaLR 29 174 -226 7 1419 416 199 0 28 chr9 109354012 109354107 -14722065 + B1_Mus2 SINE Alu 6 95 -53 7 1419 220 154 0 0 chr9 109354098 109354137 -14722035 - B3 SINE B2 -176 40 2 7 1419 467 236 17 69 chr9 109354480 109354653 -14721519 + RNLTR23 LTR ERVK 479 642 0 7 1419 1322 263 6 3 chr9 109354858 109355186 -14720986 + RNERVK23-int LTR ERVK 181 509 -7708 7 1419 822 150 0 0 chr9 109355211 109355344 -14720828 - B2_Mm2 SINE B2 -61 134 2 7 1419 460 208 99 8 chr9 109355348 109355479 -14720693 - B1_Mur3 SINE Alu -1 148 6 7 1419 422 309 0 0 chr9 109355549 109355672 -14720500 + RSINE1 SINE B4 19 141 -24 7 1419 24 0 0 0 chr9 109355677 109355701 -14720471 + AT_rich Low_complexity Low_complexity 1 24 0 7 1419 264 338 73 80 chr9 109355701 109355852 -14720320 + B3 SINE B2 1 150 -66 7 1419 30 27 0 0 chr9 109356089 109356126 -14720046 + AT_rich Low_complexity Low_complexity 1 37 0 7 1419 986 181 11 0 chr9 109356150 109356327 -14719845 + B2_Mm1t SINE B2 1 179 -14 7 1419 263 167 18 53 chr9 109356393 109356450 -14719722 + B2_Mm2 SINE B2 47 101 -94 7 1419 297 0 0 0 chr9 109356481 109356514 -14719658 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 7 1419 243 337 58 29 chr9 109356532 109356636 -14719536 + PB1D9 SINE Alu 3 109 -11 7 1419 351 311 66 26 chr9 109357131 109357283 -14718889 - Tigger7 DNA MER2_type -2205 286 129 7 1419 251 234 16 0 chr9 109357292 109357356 -14718816 + MTEa LTR MaLR 2 66 -313 7 1419 414 219 36 45 chr9 109357357 109357467 -14718705 + MTEb LTR MaLR 268 376 -3 7 1419 560 244 53 8 chr9 109357569 109357701 -14718471 - B1_Mur2 SINE Alu -7 142 5 7 1419 465 202 33 58 chr9 109357715 109357836 -14718336 - B3 SINE B2 -2 214 97 7 1419 810 188 0 0 chr9 109357917 109358077 -14718095 + (TA)n Simple_repeat Simple_repeat 2 161 0 7 1419 297 253 43 32 chr9 109358085 109358179 -14717993 - Tigger7 DNA MER2_type -2394 97 3 7 1419 412 309 29 0 chr9 109358512 109358648 -14717524 + RSINE1 SINE B4 3 142 -23 7 1419 33 43 0 0 chr9 109358784 109358831 -14717341 + AT_rich Low_complexity Low_complexity 1 47 0 7 1419 633 257 50 6 chr9 109358869 109359049 -14717123 - B3 SINE B2 -19 197 10 7 1419 4279 123 22 75 chr9 109359321 109360175 -14715997 + RMER17D2 LTR ERVK 1 809 0 7 1419 326 356 30 15 chr9 109360370 109360504 -14715668 - RSINE1 SINE B4 -16 149 14 8 1419 673 195 42 0 chr9 109360648 109360766 -14715406 + ETnERV2-int LTR ERVK 7070 7192 -214 8 1419 392 293 150 68 chr9 109361336 109361676 -14714496 - RLTR9A LTR ERVK 0 368 1 8 1419 351 296 97 58 chr9 109362042 109362268 -14713904 - RLTR6-int LTR ERV1 -117 7661 7427 8 1419 298 73 0 0 chr9 109362271 109362312 -14713860 + MuRRS4-int LTR ERV1 5023 5063 0 8 1419 1648 141 10 16 chr9 109362320 109362703 -14713469 + LTRIS4 LTR ERV1 122 512 0 8 1419 256 196 32 111 chr9 109362703 109362829 -14713343 + MuRRS4-int LTR ERV1 1 116 -3582 8 1419 24995 84 25 7 chr9 109363035 109367326 -14708846 + MuRRS4-int LTR ERV1 337 4723 -340 8 1419 435 19 0 0 chr9 109367326 109367378 -14708794 + (GA)n Simple_repeat Simple_repeat 2 53 0 8 1419 24995 69 15 5 chr9 109367378 109367701 -14708471 + MuRRS4-int LTR ERV1 4724 5062 -1 8 1419 1630 172 52 39 chr9 109367709 109368090 -14708082 + LTRIS3 LTR ERV1 122 512 0 8 1419 347 283 0 0 chr9 109368095 109368187 -14707985 - RNERVK23-int LTR ERVK -715 7502 7411 8 1419 742 155 120 19 chr9 109368307 109368465 -14707707 - RMER16-int LTR ERVK -1709 3697 3524 8 1419 6207 169 53 16 chr9 109368467 109370128 -14706044 - RMER16-int LTR ERVK -2118 3288 1566 8 1419 305 208 70 70 chr9 109370274 109370388 -14705784 - SRV_MM-int LTR ERVK -3892 2275 2162 8 1419 501 230 3 42 chr9 109370566 109370721 -14705451 - ETnERV2-int LTR ERVK -4951 2455 2363 8 1419 956 111 7 7 chr9 109370722 109370876 -14705296 + RLTR45 LTR ERVK 1 154 -328 8 1419 3782 11 57 24 chr9 109370876 109371336 -14704836 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1419 1216 128 37 50 chr9 109371338 109371637 -14704535 + IAPEz-int LTR ERVK 3 258 -7323 8 1419 240 214 0 0 chr9 109371639 109371681 -14704491 + RLTR27 LTR ERVK 231 272 -37 8 1419 3964 60 2 18 chr9 109371681 109372187 -14703985 + IAPEz-int LTR ERVK 165 662 -5819 8 1419 2739 77 0 3 chr9 109372187 109372537 -14703635 + IAPEz-int LTR ERVK 1359 1707 -4774 8 1419 6371 67 12 11 chr9 109372525 109373351 -14702821 + IAPEz-int LTR ERVK 5653 6479 -2 8 1419 3509 15 15 7 chr9 109373353 109373761 -14702411 + IAPLTR2_Mm LTR ERVK 1 411 0 8 1419 1274 179 97 7 chr9 109373777 109374075 -14702097 + RLTR45 LTR ERVK 158 482 0 8 1419 5025 67 34 20 chr9 109374075 109374332 -14701840 + RLTR45-int LTR ERVK 1 279 -6965 8 1419 180 0 0 0 chr9 109374332 109374352 -14701820 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1419 5025 67 34 20 chr9 109374352 109374777 -14701395 + RLTR45-int LTR ERVK 280 692 -6552 8 1419 1824 59 0 0 chr9 109375133 109375352 -14700820 + RLTR45-int LTR ERVK 692 910 -6334 8 1419 794 118 0 0 chr9 109375477 109375596 -14700576 + RLTR45-int LTR ERVK 913 1031 -6213 8 1419 264 213 39 39 chr9 109375986 109376064 -14700108 + IAPEz-int LTR ERVK 2388 2465 -4016 8 1419 2668 53 0 0 chr9 109376385 109376705 -14699467 + RLTR45-int LTR ERVK 1329 1648 -5596 8 1419 7787 144 13 10 chr9 109376794 109378192 -14697980 + RLTR45-int LTR ERVK 6331 7761 -456 8 1419 2479 149 53 21 chr9 109378193 109378660 -14697512 + RLTR45 LTR ERVK 1 482 0 8 1419 273 232 112 31 chr9 109378667 109378765 -14697407 - ETnERV-int LTR ERVK -3376 2432 2327 8 1419 358 331 19 13 chr9 109378756 109378915 -14697257 - ETnERV-int LTR ERVK -1738 1576 1417 8 1419 3355 192 6 38 chr9 109379036 109379727 -14696445 - RMER16-int LTR ERVK -3848 1558 890 8 1419 1452 195 120 14 chr9 109379715 109380114 -14696058 - RMER16-int LTR ERVK -4732 674 192 8 1419 1280 184 50 151 chr9 109380248 109380665 -14695507 + RLTR1B LTR ERV1 135 509 -3 8 1419 333 0 0 0 chr9 109380835 109380872 -14695300 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1419 532 252 14 20 chr9 109380902 109381048 -14695124 - B1_Mus2 SINE Alu -2 145 1 8 1419 1126 133 17 0 chr9 109381377 109381550 -14694622 + B2_Mm2 SINE B2 1 176 -19 8 1419 267 239 0 0 chr9 109381585 109381673 -14694499 + (TG)n Simple_repeat Simple_repeat 1 88 0 8 1419 507 165 0 0 chr9 109381702 109381811 -14694361 + (TG)n Simple_repeat Simple_repeat 1 109 0 8 1419 393 260 54 121 chr9 109381811 109381977 -14694195 - RSINE1 SINE B4 0 165 11 8 1419 310 258 167 16 chr9 109382126 109382252 -14693920 + B1F SINE Alu 1 145 -4 8 1419 25 31 0 0 chr9 109382254 109382286 -14693886 + AT_rich Low_complexity Low_complexity 1 32 0 8 1419 276 277 49 10 chr9 109382835 109382937 -14693235 + L1MDa LINE L1 1774 1879 -4754 8 1419 555 238 16 8 chr9 109383459 109383586 -14692586 - B1_Mur2 SINE Alu -6 143 16 8 1419 234 0 0 0 chr9 109383619 109383645 -14692527 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 8 1419 253 308 96 32 chr9 109383690 109383784 -14692388 - ID_B1 SINE B4 -62 162 63 8 1419 663 164 16 0 chr9 109383900 109384022 -14692150 - B3 SINE B2 -92 124 1 8 1419 281 274 119 8 chr9 109384257 109384375 -14691797 + RSINE1 SINE B4 3 133 -32 8 1419 355 277 0 0 chr9 109385099 109385182 -14690990 + B1_Mus2 SINE Alu 43 125 -22 8 1419 311 220 16 107 chr9 109385182 109385304 -14690868 - URR1B DNA MER1_type -32 193 83 8 1419 511 302 8 0 chr9 109385415 109385544 -14690628 - B1_Mur1 SINE Alu -8 141 12 8 1419 21 0 0 0 chr9 109385557 109385578 -14690594 + AT_rich Low_complexity Low_complexity 1 21 0 8 1419 182 180 0 39 chr9 109385583 109385635 -14690537 + (TATG)n Simple_repeat Simple_repeat 4 53 0 8 1419 198 0 0 0 chr9 109387226 109387248 -14688924 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1419 429 54 0 0 chr9 109387248 109387304 -14688868 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1419 585 158 61 8 chr9 109387362 109387489 -14688683 - B1_Mur4 SINE Alu 0 150 2 8 1419 526 258 30 0 chr9 109387517 109387649 -14688523 + B1_Mur1 SINE Alu 5 140 -9 8 1419 713 326 26 30 chr9 109387917 109388186 -14687986 - B4A SINE B4 -20 272 5 8 1419 451 257 41 48 chr9 109388735 109388882 -14687290 + B1F2 SINE Alu 3 148 -1 8 1419 555 248 0 15 chr9 109388900 109389031 -14687141 + B3 SINE B2 2 130 -86 8 1419 436 243 29 0 chr9 109389203 109389306 -14686866 + RSINE1 SINE B4 4 109 -56 8 1419 531 209 104 0 chr9 109389440 109389574 -14686598 - B1_Mur2 SINE Alu 0 149 2 8 1419 843 137 98 12 chr9 109389720 109389883 -14686289 + B2_Mm2 SINE B2 1 177 -18 8 1419 216 163 0 0 chr9 109389906 109389949 -14686223 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1419 4763 175 5 8 chr9 109389951 109390804 -14685368 + L1_Mm LINE L1 4922 5771 -112 8 1419 2986 38 3 5 chr9 109390844 109391214 -14684958 + L1Md_F2 LINE L1 6214 6582 0 8 1419 285 179 150 50 chr9 109391228 109391328 -14684844 + RMER17C-int LTR ERVK 2378 2487 -751 8 1419 195 69 0 0 chr9 109391340 109391369 -14684803 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1419 939 118 0 0 chr9 109391387 109391531 -14684641 + (TA)n Simple_repeat Simple_repeat 1 144 0 8 1419 3759 170 37 22 chr9 109391534 109392261 -14683911 + RMER17C-int LTR ERVK 2499 3236 -2 8 1419 425 190 0 0 chr9 109392263 109392342 -14683830 + RMER17C LTR ERVK 1 79 -331 8 1419 9723 78 7 4 chr9 109392342 109394343 -14681829 + L1_Mus1 LINE L1 4547 6551 -16 8 1419 725 230 64 102 chr9 109394343 109394716 -14681456 + RMER17C LTR ERVK 52 410 0 8 1419 722 299 41 12 chr9 109394856 109395201 -14680971 + L1_Mur3 LINE L1 4008 4362 -1518 8 1419 364 179 240 64 chr9 109395224 109395349 -14680823 + B1_Mur4 SINE Alu 2 148 -2 8 1419 244 293 2 0 chr9 109395370 109395455 -14680717 + B3A SINE B2 14 99 -117 8 1419 577 240 86 7 chr9 109395626 109395777 -14680395 + B3 SINE B2 47 209 -7 8 1419 328 262 0 35 chr9 109396415 109396502 -14679670 + ID_B1 SINE B4 127 210 -14 8 1419 429 70 0 0 chr9 109396502 109396559 -14679613 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1419 446 196 41 10 chr9 109396592 109396690 -14679482 + B1_Mur1 SINE Alu 49 149 0 8 1419 361 331 41 0 chr9 109397813 109397934 -14678238 - ID_B1 SINE B4 -8 216 91 8 1419 207 188 0 0 chr9 109398113 109398161 -14678011 + GA-rich Low_complexity Low_complexity 3 50 0 8 1419 283 302 67 37 chr9 109399435 109399569 -14676603 - RSINE1 SINE B4 -10 155 18 8 1419 291 264 61 53 chr9 109399832 109399964 -14676208 - Cheshire DNA MER1_type -1459 961 829 8 1419 266 280 43 11 chr9 109400485 109400579 -14675593 + Cheshire DNA MER1_type 553 649 -1771 8 1419 1199 127 26 0 chr9 109400589 109400778 -14675394 - B2_Mm2 SINE B2 0 195 2 8 1419 479 219 25 34 chr9 109400782 109400900 -14675272 - PB1D9 SINE Alu -1 119 3 8 1419 404 339 0 0 chr9 109400965 109401092 -14675080 + RSINE1 SINE B4 17 143 -22 8 1419 23 0 0 0 chr9 109401096 109401119 -14675053 + AT_rich Low_complexity Low_complexity 1 23 0 8 1419 247 327 164 0 chr9 109401119 109401223 -14674949 + B3 SINE B2 1 121 -95 8 1419 23 0 0 0 chr9 109401452 109401475 -14674697 + AT_rich Low_complexity Low_complexity 1 23 0 8 1419 949 182 17 0 chr9 109401502 109401678 -14674494 + B2_Mm1t SINE B2 1 179 -14 8 1419 245 181 274 9 chr9 109401765 109401871 -14674301 + B2_Mm2 SINE B2 61 194 -1 8 1419 247 394 20 0 chr9 109401872 109401971 -14674201 + B1F SINE Alu 3 103 -46 8 1419 294 355 19 37 chr9 109402460 109402621 -14673551 - Tigger7 DNA MER2_type -2205 286 129 8 1419 358 208 40 50 chr9 109402704 109402805 -14673367 + MTEb LTR MaLR 277 376 -3 8 1419 564 237 53 8 chr9 109402887 109403019 -14673153 - B1_Mur2 SINE Alu -7 142 5 8 1419 517 204 35 44 chr9 109403033 109403146 -14673026 - B3 SINE B2 -2 214 103 8 1419 252 0 0 0 chr9 109403236 109403264 -14672908 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 8 1419 224 369 24 39 chr9 109403496 109403623 -14672549 + B4A SINE B4 1 125 -167 8 1419 434 293 30 0 chr9 109403688 109403821 -14672351 + RSINE1 SINE B4 3 139 -26 8 1419 24 77 0 0 chr9 109403961 109404013 -14672159 + AT_rich Low_complexity Low_complexity 1 52 0 8 1419 624 213 106 28 chr9 109404047 109404226 -14671946 - B3 SINE B2 -19 197 5 8 1419 4339 125 43 23 chr9 109404496 109404903 -14671269 + RMER17D2 LTR ERVK 1 409 -400 8 1419 1271 78 0 11 chr9 109404903 109405085 -14671087 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1419 4339 125 43 23 chr9 109405085 109405470 -14670702 + RMER17D2 LTR ERVK 410 808 -1 8 1419 333 344 31 15 chr9 109405670 109405800 -14670372 - RSINE1 SINE B4 -20 145 14 8 1419 1496 145 11 7 chr9 109406075 109406346 -14669826 - RMER17A LTR ERVK 0 751 480 8 1419 6537 155 59 13 chr9 109406347 109407554 -14668618 - RMER16-int LTR ERVK -2309 3097 1836 8 1419 7389 59 21 2 chr9 109407556 109409114 -14667058 - L1Md_F2 LINE L1 -9 6573 4976 8 1419 2790 153 2 9 chr9 109409158 109409613 -14666559 - RMER16-int LTR ERVK -4065 1341 890 8 1419 1643 181 145 22 chr9 109409603 109410009 -14666163 - RMER16-int LTR ERVK -4644 762 307 8 1419 213 205 0 0 chr9 109410034 109410073 -14666099 + CT-rich Low_complexity Low_complexity 2 40 0 8 1419 455 233 29 19 chr9 109410413 109410518 -14665654 - RMER17B LTR ERVK -287 671 566 8 1419 565 309 132 51 chr9 109410566 109410900 -14665272 - RLTR9A LTR ERVK 0 368 8 8 1419 4627 170 19 44 chr9 109410904 109411434 -14664738 - RMER17B LTR ERVK -4 954 458 8 1419 3279 105 19 6 chr9 109411434 109411913 -14664259 - L1Md_F2 LINE L1 0 6582 6098 8 1419 4627 170 19 44 chr9 109411913 109412360 -14663812 - RMER17B LTR ERVK -501 457 1 8 1419 282 336 19 0 chr9 109412513 109412617 -14663555 - PB1D10 SINE Alu -1 116 11 8 1419 369 0 0 0 chr9 109412657 109412698 -14663474 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1419 525 260 99 6 chr9 109412698 109412880 -14663292 - B3 SINE B2 -17 199 1 8 1419 264 273 23 0 chr9 109412927 109413015 -14663157 - RLTR10A LTR ERVK 0 411 322 8 1419 389 233 29 10 chr9 109413050 109413154 -14663018 - RLTR10A LTR ERVK -166 245 140 8 1419 1930 199 16 29 chr9 109413195 109413678 -14662494 - IAPEY3-int LTR ERVK -202 7042 6530 8 1419 2793 296 70 45 chr9 109413798 109416941 -14659231 - IAPEY3-int LTR ERVK -2258 5422 992 8 1419 416 209 54 54 chr9 109417236 109417347 -14658825 - IAPEY3-int LTR ERVK -1559 428 318 8 1419 518 241 183 50 chr9 109417362 109417602 -14658570 - RLTR10A LTR ERVK 0 411 140 8 1419 815 224 185 4 chr9 109417759 109418019 -14658153 + ORR1D1 LTR MaLR 1 307 -67 9 1419 491 190 26 110 chr9 109418041 109418195 -14657977 - B1_Mus1 SINE Alu -7 141 1 9 1419 524 15 15 0 chr9 109418216 109418281 -14657891 + (TC)n Simple_repeat Simple_repeat 1 66 0 9 1419 679 155 17 0 chr9 109418334 109418450 -14657722 - B3 SINE B2 -97 119 2 9 1419 24 0 0 0 chr9 109418585 109418609 -14657563 + AT_rich Low_complexity Low_complexity 1 24 0 9 1419 256 308 25 13 chr9 109418634 109418713 -14657459 - 7SK RNA RNA -250 81 2 9 1419 456 227 59 29 chr9 109418723 109418859 -14657313 - B1_Mur1 SINE Alu 0 149 10 9 1419 1030 131 11 6 chr9 109419217 109419393 -14656779 + B2_Mm2 SINE B2 1 177 -18 9 1419 330 226 0 0 chr9 109419421 109419527 -14656645 + (TG)n Simple_repeat Simple_repeat 1 106 0 9 1419 428 276 68 20 chr9 109419603 109419751 -14656421 - RSINE1 SINE B4 0 165 11 9 1419 244 259 30 114 chr9 109419900 109420031 -14656141 + PB1D7 SINE Alu 1 120 0 9 1419 25 0 0 0 chr9 109420032 109420057 -14656115 + AT_rich Low_complexity Low_complexity 1 25 0 9 1419 229 307 49 10 chr9 109420610 109420712 -14655460 + L1MDa LINE L1 1774 1879 -4754 9 1419 257 239 71 43 chr9 109420779 109420849 -14655323 + ID_B1 SINE B4 145 216 -8 9 1419 440 326 130 36 chr9 109420882 109421359 -14654813 + L1M3 LINE L1 4662 5183 -957 9 1419 400 181 148 28 chr9 109421681 109421789 -14654383 + B1_Mur4 SINE Alu 15 135 -15 9 1419 491 266 23 15 chr9 109422178 109422308 -14653864 - B1_Mur2 SINE Alu -6 143 13 9 1419 280 344 63 16 chr9 109422367 109422494 -14653678 - ID_B1 SINE B4 -29 195 63 9 1419 704 186 0 0 chr9 109422611 109422735 -14653437 - B3 SINE B2 -92 124 1 9 1419 285 271 114 41 chr9 109422969 109423092 -14653080 + RSINE1 SINE B4 3 134 -31 9 1419 436 254 59 0 chr9 109423811 109423929 -14652243 + B1_Mus2 SINE Alu 25 149 0 9 1419 495 286 13 20 chr9 109424025 109424173 -14651999 - RSINE1 SINE B4 -2 163 17 9 1419 448 197 7 110 chr9 109424173 109424327 -14651845 - URR1B DNA MER1_type 0 225 88 9 1419 605 218 37 8 chr9 109424437 109424571 -14651601 - B1_Mur1 SINE Alu 0 149 12 9 1419 244 205 0 46 chr9 109424611 109424698 -14651474 + (TATG)n Simple_repeat Simple_repeat 4 86 0 9 1419 1935 228 124 89 chr9 109425778 109426642 -14649530 + RLTR13D6 LTR ERVK 1 894 -8 9 1419 291 28 0 0 chr9 109427184 109427220 -14648952 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1419 321 117 0 0 chr9 109427220 109427280 -14648892 + (GA)n Simple_repeat Simple_repeat 2 61 0 9 1419 495 178 30 0 chr9 109427338 109427439 -14648733 - B1_Mur4 SINE Alu 0 150 47 9 1419 562 261 15 0 chr9 109427490 109427624 -14648548 + B1_Mur1 SINE Alu 5 140 -9 9 1419 714 347 26 15 chr9 109427888 109428157 -14648015 - B4A SINE B4 -16 276 5 9 1419 403 311 29 7 chr9 109428703 109428839 -14647333 + B1F2 SINE Alu 5 143 -6 9 1419 629 207 207 28 chr9 109428852 109429031 -14647141 + B3 SINE B2 2 212 -4 9 1419 262 232 8 66 chr9 109429101 109429187 -14646985 + B1F2 SINE Alu 34 111 -38 9 1419 595 225 36 0 chr9 109429328 109429466 -14646706 + B1_Mur1 SINE Alu 7 149 0 9 1419 1873 184 44 22 chr9 109429965 109430377 -14645795 + L1_Mur2 LINE L1 4731 5151 -726 9 1419 9067 9 0 4 chr9 109430381 109431507 -14644665 - L1Md_T LINE L1 0 6582 5461 9 1419 3733 171 3 5 chr9 109431500 109432141 -14644031 + L1_Mm LINE L1 5136 5775 -108 9 1419 542 185 7 36 chr9 109432148 109432288 -14643884 + RMER17C-int LTR ERVK 2367 2502 -736 9 1419 528 145 34 7 chr9 109432288 109432434 -14643738 + (TA)n Simple_repeat Simple_repeat 2 151 0 9 1419 232 250 0 0 chr9 109432459 109432511 -14643661 - LSU-rRNA_Hsa rRNA rRNA -782 4253 4202 9 1419 3064 162 35 19 chr9 109432511 109433076 -14643096 + RMER17C-int LTR ERVK 2586 3159 -79 9 1419 1574 42 0 0 chr9 109433076 109433291 -14642881 + MT-int LTR MaLR 810 1024 -74 9 1419 360 194 0 14 chr9 109433292 109433365 -14642807 + RMER17C-int LTR ERVK 3165 3236 -2 9 1419 562 223 61 52 chr9 109433367 109433874 -14642298 + RMER17C LTR ERVK 1 410 0 9 1419 717 308 44 6 chr9 109434017 109434357 -14641815 + L1_Mur3 LINE L1 4010 4362 -1518 9 1419 415 225 124 58 chr9 109434380 109434517 -14641655 + B1_Mur1 SINE Alu 2 147 -2 9 1419 617 283 0 112 chr9 109434532 109434755 -14641417 + B3 SINE B2 12 209 -7 9 1419 207 0 0 0 chr9 109434764 109434787 -14641385 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9 1419 268 306 9 36 chr9 109434804 109434916 -14641256 + PB1D9 SINE Alu 1 109 -11 9 1419 273 268 12 35 chr9 109435399 109435484 -14640688 + ID_B1 SINE B4 127 209 -15 9 1419 595 108 0 19 chr9 109435502 109435556 -14640616 + (GAA)n Simple_repeat Simple_repeat 1 54 0 9 1419 1182 72 0 32 chr9 109435556 109435742 -14640430 + (GGA)n Simple_repeat Simple_repeat 1 180 0 9 1419 595 108 0 19 chr9 109435742 109435791 -14640381 + (GAA)n Simple_repeat Simple_repeat 1 48 0 9 1419 396 195 0 0 chr9 109435848 109435925 -14640247 + B1F1 SINE Alu 73 149 0 9 1419 231 279 73 0 chr9 109435947 109436015 -14640157 + RSINE1 SINE B4 92 164 -1 9 1419 292 268 39 125 chr9 109436735 109436863 -14639309 - PB1 SINE Alu -5 122 6 9 1419 593 80 0 11 chr9 109437049 109437138 -14639034 + (GGAA)n Simple_repeat Simple_repeat 2 89 0 9 1419 274 316 10 10 chr9 109438213 109438309 -14637863 + (CATA)n Simple_repeat Simple_repeat 3 98 0 9 1419 498 219 53 38 chr9 109438545 109438678 -14637494 - B1_Mur1 SINE Alu -1 148 14 9 1419 273 98 0 0 chr9 109438892 109438933 -14637239 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1419 661 188 104 8 chr9 109439020 109439154 -14637018 - B3 SINE B2 -68 148 2 9 1419 603 192 16 24 chr9 109439577 109439700 -14636472 - B1_Mur1 SINE Alu -21 128 7 9 1419 276 30 0 0 chr9 109439709 109439742 -14636430 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 9 1419 631 222 14 22 chr9 109439744 109439882 -14636290 - B1_Mur4 SINE Alu -13 137 1 9 1419 473 333 31 21 chr9 109439987 109440180 -14635992 - B3A SINE B2 -3 195 1 9 1419 2970 94 14 17 chr9 109440758 109441255 -14634917 - RLTR13D1 LTR ERVK 0 855 302 9 1419 321 138 0 33 chr9 109441252 109441312 -14634860 + B1_Mus2 SINE Alu 37 94 -53 9 1419 216 158 0 0 chr9 109441304 109441342 -14634830 - B3 SINE B2 -177 39 2 9 1419 430 265 11 69 chr9 109441687 109441861 -14634311 + RNLTR23 LTR ERVK 479 642 0 9 1419 1310 272 8 8 chr9 109442015 109442371 -14633801 + RNERVK23-int LTR ERVK 181 536 -7681 9 1419 894 120 0 0 chr9 109442383 109442516 -14633656 - B2_Mm2 SINE B2 -61 134 2 9 1419 457 191 96 37 chr9 109442521 109442657 -14633515 - B1_Mur3 SINE Alu 0 149 6 9 1419 1268 46 0 0 chr9 109442694 109442845 -14633327 - RLTR45-int LTR ERVK -5765 1479 1329 9 1419 432 253 67 37 chr9 109443183 109443347 -14632825 - RNERVK23-int LTR ERVK -1854 6363 6195 9 1419 1154 51 0 0 chr9 109443556 109443694 -14632478 - RLTR45-int LTR ERVK -6426 818 681 9 1419 1070 70 0 40 chr9 109444039 109444189 -14631983 - RLTR45-int LTR ERVK -6552 692 549 9 177 3459 100 36 10 chr9 109444947 109445453 -14630719 - RLTR45-int LTR ERVK -6725 519 1 9 1420 2960 116 32 53 chr9 109445453 109445945 -14630227 - RLTR45 LTR ERVK 0 482 1 9 1420 2267 269 2 0 chr9 109445948 109446462 -14629710 + RNERVK23-int LTR ERVK 5235 5749 -2468 9 1420 740 271 12 47 chr9 109446467 109446723 -14629449 + RNERVK23-int LTR ERVK 5715 5961 -2256 9 1420 363 331 0 0 chr9 109446723 109446865 -14629307 + MuRRS4-int LTR ERV1 4597 4738 -325 9 1420 553 27 27 0 chr9 109446872 109446947 -14629225 + (GA)n Simple_repeat Simple_repeat 1 77 0 9 1420 259 264 54 65 chr9 109447163 109447256 -14628916 + RNLTR23 LTR ERVK 479 570 -72 9 1420 271 136 0 0 chr9 109447247 109447291 -14628881 + U2 snRNA snRNA 1 44 -144 9 1420 361 188 10 59 chr9 109447280 109447382 -14628790 + RNLTR23 LTR ERVK 546 642 0 9 1420 214 139 0 44 chr9 109447874 109447919 -14628253 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 9 1420 212 31 0 59 chr9 109447929 109447963 -14628209 + (TCTCTG)n Simple_repeat Simple_repeat 5 36 0 9 1420 434 116 0 0 chr9 109448071 109448140 -14628032 - B1_Mur4 SINE Alu -2 148 80 9 1420 327 274 71 0 chr9 109448354 109448438 -14627734 - RSINE1 SINE B4 -19 146 57 9 1420 207 0 0 0 chr9 109448534 109448557 -14627615 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1420 302 288 78 35 chr9 109448778 109448893 -14627279 - Cheshire DNA MER1_type -1465 955 836 9 1420 1610 96 0 40 chr9 109449037 109449309 -14626863 + BGLII LTR ERVK 161 421 0 9 1420 1336 84 11 0 chr9 109449311 109449501 -14626671 - BGLII LTR ERVK -229 192 1 9 1420 8722 123 48 16 chr9 109449502 109450932 -14625240 - RMER16-int LTR ERVK -2155 3251 1777 9 1420 209 58 57 19 chr9 109450946 109450999 -14625173 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 9 1420 243 0 0 0 chr9 109451009 109451036 -14625136 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1420 324 229 61 52 chr9 109451125 109451240 -14624932 + RMER16-int LTR ERVK 2162 2277 -3890 9 1420 643 191 6 176 chr9 109451341 109451506 -14624666 + RMER16-int LTR ERVK 1570 1705 -3701 9 1420 861 171 137 0 chr9 109451504 109451679 -14624493 - RMER16-int LTR ERVK -4945 461 263 9 1420 558 0 0 0 chr9 109451679 109451741 -14624431 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 1420 517 290 132 61 chr9 109452136 109452478 -14623694 - RLTR9A LTR ERVK -2 366 1 9 1420 432 0 0 0 chr9 109452743 109452791 -14623381 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1420 737 218 92 0 chr9 109452796 109452970 -14623202 - B3 SINE B2 -25 191 2 9 1420 246 341 0 12 chr9 109452980 109453066 -14623106 - ID_B1 SINE B4 -4 220 136 9 1420 977 228 181 0 chr9 109453130 109453389 -14622783 + ORR1D1 LTR MaLR 1 306 -68 9 1420 631 141 21 117 chr9 109453415 109453560 -14622612 - B1_Mus1 SINE Alu -10 138 8 9 1420 1315 73 23 0 chr9 109453590 109453767 -14622405 - B2_Mm2 SINE B2 -6 189 9 9 1420 545 272 213 0 chr9 109453815 109453984 -14622188 - B3 SINE B2 -10 206 2 9 1420 4846 103 70 0 chr9 109454101 109454770 -14621402 - L1_Mus3 LINE L1 -4 6634 5919 9 1420 269 322 23 11 chr9 109454838 109454926 -14621246 - 7SK RNA RNA -241 90 2 9 1420 659 213 27 41 chr9 109454935 109455082 -14621090 - B1_Mur1 SINE Alu -3 146 2 9 1420 1069 162 6 6 chr9 109455415 109455595 -14620577 + B2_Mm2 SINE B2 4 183 -12 1 1420 435 242 0 0 chr9 109455621 109455778 -14620394 + (TG)n Simple_repeat Simple_repeat 2 158 0 1 1420 485 261 86 66 chr9 109455813 109455965 -14620207 - RSINE1 SINE B4 0 165 11 1 1420 391 54 18 0 chr9 109456042 109456098 -14620074 - B1_Mus2 SINE Alu -1 146 90 1 1420 215 270 62 73 chr9 109456303 109456399 -14619773 + B4 SINE B4 73 167 -125 1 1420 338 216 140 47 chr9 109456327 109456434 -14619738 + B1_Mur4 SINE Alu 15 131 -19 1 1420 678 208 8 15 chr9 109456817 109456949 -14619223 - B1_Mur2 SINE Alu -6 143 13 1 1420 438 257 92 33 chr9 109456967 109457120 -14619052 - ID_B1 SINE B4 0 224 63 1 1420 326 42 21 0 chr9 109457264 109457312 -14618860 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1420 934 120 15 15 chr9 109457312 109457447 -14618725 - B1_Mus2 SINE Alu -11 136 2 1 1420 888 121 0 0 chr9 109457485 109457609 -14618563 - B3 SINE B2 -92 124 1 1 1420 329 244 206 37 chr9 109457846 109457982 -14618190 + RSINE1 SINE B4 3 161 -4 1 1420 22 35 0 0 chr9 109458014 109458043 -14618129 + AT_rich Low_complexity Low_complexity 1 29 0 1 1420 502 233 0 0 chr9 109458676 109458779 -14617393 + B1_Mus2 SINE Alu 45 147 0 1 1420 342 301 19 19 chr9 109458875 109458980 -14617192 - RSINE1 SINE B4 -2 163 59 1 1420 530 220 170 73 chr9 109459026 109459232 -14616940 - URR1A DNA MER1_type 0 226 1 1 1420 645 238 28 14 chr9 109459287 109459432 -14616740 - B1_Mur1 SINE Alu 0 149 3 1 1420 396 0 0 0 chr9 109459461 109459505 -14616667 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1420 204 135 0 0 chr9 109461026 109461063 -14615109 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1420 388 48 32 0 chr9 109461078 109461141 -14615031 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1420 311 298 128 0 chr9 109461142 109461236 -14614936 + B3 SINE B2 104 209 -7 1 1420 415 130 169 0 chr9 109461248 109461325 -14614847 - B1_Mur4 SINE Alu 0 150 61 1 1420 426 283 69 23 chr9 109461333 109461463 -14614709 + B1_Mur1 SINE Alu 5 140 -9 1 1420 933 286 45 59 chr9 109461664 109461681 -14614491 - B4A SINE B4 0 292 276 1 1420 349 54 36 0 chr9 109461681 109461737 -14614435 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1420 933 286 45 59 chr9 109461737 109462009 -14614163 - B4A SINE B4 -17 275 7 1 1420 1168 121 29 0 chr9 109462569 109462742 -14613430 + B2_Mm1t SINE B2 2 179 -14 1 1420 328 146 0 35 chr9 109462834 109462891 -14613281 + B2_Mm2 SINE B2 47 101 -94 1 1420 315 71 0 0 chr9 109462899 109462941 -14613231 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1420 503 285 21 7 chr9 109462999 109463144 -14613028 + B1F2 SINE Alu 3 149 0 1 1420 851 194 191 16 chr9 109463152 109463335 -14612837 + B3 SINE B2 2 216 0 1 1420 479 233 29 0 chr9 109463454 109463557 -14612615 + RSINE1 SINE B4 4 109 -56 1 1420 646 187 104 0 chr9 109463700 109463834 -14612338 - B1_Mur2 SINE Alu 0 149 2 1 1420 943 231 152 64 chr9 109463945 109464273 -14611899 + MTD LTR MaLR 63 419 0 1 1420 2547 133 75 26 chr9 109464421 109464877 -14611295 + RMER17C-int LTR ERVK 1375 1852 -1386 1 1420 708 146 8 30 chr9 109465303 109465437 -14610735 + RMER17C-int LTR ERVK 2368 2498 -740 1 1420 261 0 0 0 chr9 109465438 109465467 -14610705 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1420 3304 150 34 22 chr9 109465467 109466061 -14610111 + RMER17C-int LTR ERVK 2633 3233 -5 1 1420 1209 208 49 72 chr9 109466066 109466455 -14609717 + RMER17C LTR ERVK 1 380 -30 1 1420 771 289 57 6 chr9 109466615 109466932 -14609240 + L1_Mur3 LINE L1 4010 4342 -1538 1 1420 415 227 90 83 chr9 109466970 109467114 -14609058 + B1_Mur3 SINE Alu 5 149 0 1 1420 374 72 35 24 chr9 109467115 109467200 -14608972 + (CAA)n Simple_repeat Simple_repeat 2 87 0 1 1420 353 252 255 37 chr9 109467216 109467377 -14608795 + B3A SINE B2 1 196 -2 1 1420 581 272 81 7 chr9 109467477 109467625 -14608547 + B3 SINE B2 47 205 -11 1 1420 293 324 9 28 chr9 109467666 109467774 -14608398 + PB1D9 SINE Alu 4 109 -11 1 1420 344 286 0 30 chr9 109468253 109468354 -14607818 + ID_B1 SINE B4 127 224 0 1 1420 621 172 26 19 chr9 109468355 109468462 -14607710 + polypurine Low_complexity Low_complexity 4 113 0 1 1420 1172 97 11 0 chr9 109468462 109468638 -14607534 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 1420 621 172 26 19 chr9 109468638 109468684 -14607488 + polypurine Low_complexity Low_complexity 114 158 0 1 1420 409 263 11 0 chr9 109468708 109468803 -14607369 + B1_Mur1 SINE Alu 49 144 -5 1 1420 285 29 0 0 chr9 109468857 109468891 -14607281 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1420 453 273 31 15 chr9 109469956 109470086 -14606086 - ID_B1 SINE B4 -8 216 85 1 1420 452 175 0 10 chr9 109470247 109470345 -14605827 + GA-rich Low_complexity Low_complexity 1 97 0 1 1420 328 252 129 36 chr9 109470345 109470485 -14605687 + HAL1-3A_ME LINE L1 2285 2437 -421 1 1420 246 62 0 0 chr9 109470485 109470517 -14605655 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 1 1420 247 259 0 17 chr9 109471276 109471335 -14604837 + RLTR10B LTR ERVK 17 74 -218 1 1420 257 262 16 0 chr9 109471361 109471422 -14604750 + B1F SINE Alu 83 144 -5 1 1420 207 235 0 19 chr9 109471618 109471670 -14604502 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 1 1420 856 135 13 6 chr9 109471901 109472058 -14604114 + CT-rich Low_complexity Low_complexity 4 161 0 1 1420 658 183 40 47 chr9 109472062 109472211 -14603961 - B1_Mur1 SINE Alu -1 148 1 1 1420 3696 63 40 17 chr9 109472299 109472770 -14603402 - RLTR45 LTR ERVK 0 482 1 1 1420 30061 36 16 5 chr9 109472770 109475223 -14600949 - RLTR45-int LTR ERVK 0 7244 4762 1 1420 180 0 0 0 chr9 109475223 109475243 -14600929 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1420 30061 73 23 20 chr9 109475243 109479541 -14596631 - RLTR45-int LTR ERVK -2483 4761 578 1 1420 2488 67 70 3 chr9 109479538 109479868 -14596304 - RLTR45-int LTR ERVK -6892 352 1 1 1420 3645 74 43 2 chr9 109479868 109480331 -14595841 - RLTR45 LTR ERVK 0 482 1 1 1420 459 0 0 0 chr9 109480371 109480422 -14595750 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1420 342 250 71 12 chr9 109480428 109480513 -14595659 - B1F SINE Alu -11 138 49 1 1420 865 212 0 7 chr9 109480508 109480655 -14595517 - B3 SINE B2 -68 148 3 1 1420 286 348 9 18 chr9 109480907 109481021 -14595151 - MLT1D LTR MaLR -131 374 262 1 1420 678 183 16 24 chr9 109481079 109481202 -14594970 - B1_Mur1 SINE Alu -21 128 7 1 1420 874 101 42 35 chr9 109481232 109481376 -14594796 - B1_Mur4 SINE Alu 0 150 6 1 1420 267 31 0 0 chr9 109481388 109481420 -14594752 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1420 585 330 31 20 chr9 109481516 109481711 -14594461 - B3A SINE B2 -1 197 1 1 1420 952 183 0 0 chr9 109482266 109482430 -14593742 + MTC LTR MaLR 1 164 -257 1 1420 240 270 93 74 chr9 109482485 109482593 -14593579 + MT2B LTR ERVL 143 252 -349 1 1420 479 148 0 36 chr9 109482510 109482594 -14593578 + B1_Mus2 SINE Alu 14 94 -53 1 1420 270 79 0 0 chr9 109482586 109482624 -14593548 - B3 SINE B2 -177 39 2 1 1420 552 294 158 42 chr9 109482948 109483278 -14592894 - RLTR9A LTR ERVK 0 368 1 1 1420 704 302 34 22 chr9 109483628 109483984 -14592188 - MuRRS4-int LTR ERV1 -172 4891 4532 1 1420 860 120 30 37 chr9 109484081 109484188 -14591984 - RMER16-int LTR ERVK -1706 3700 3593 1 1420 230 0 33 0 chr9 109484188 109484218 -14591954 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1420 860 120 30 37 chr9 109484218 109484274 -14591898 - RMER16-int LTR ERVK -1814 3592 3538 1 1420 382 254 158 0 chr9 109484716 109484830 -14591342 - Tigger7 DNA MER2_type -2239 252 121 1 1420 225 200 22 0 chr9 109484850 109484895 -14591277 + MTEa LTR MaLR 21 66 -313 1 1420 323 232 40 50 chr9 109484906 109485006 -14591166 + MTC LTR MaLR 278 376 -3 1 1420 619 229 53 8 chr9 109485106 109485238 -14590934 - B1_Mur2 SINE Alu -7 142 5 1 1420 579 185 35 44 chr9 109485252 109485365 -14590807 - B3 SINE B2 -2 214 103 1 1420 258 268 70 0 chr9 109485459 109485530 -14590642 - Tigger7 DNA MER2_type -2394 97 22 1 1420 308 305 217 26 chr9 109485690 109485881 -14590291 + B4A SINE B4 1 228 -64 1 1420 404 360 14 0 chr9 109485881 109486020 -14590152 + RSINE1 SINE B4 2 142 -23 1 1420 29 28 0 0 chr9 109486155 109486191 -14589981 + AT_rich Low_complexity Low_complexity 1 36 0 1 1420 784 255 27 0 chr9 109486242 109486430 -14589742 - B3 SINE B2 -19 197 5 1 1420 1551 232 98 48 chr9 109486668 109487218 -14588954 - RMER17A2 LTR ERVK 0 906 67 1 1420 1337 102 24 24 chr9 109487222 109487433 -14588739 - RMER17A2 LTR ERVK -693 213 3 1 1420 440 338 28 14 chr9 109487654 109487795 -14588377 - RSINE1 SINE B4 -9 156 14 1 1420 21988 154 53 5 chr9 109488134 109493196 -14582976 + L1Md_Gf LINE L1 187 5592 -297 1 1420 8512 52 5 0 chr9 109493196 109494187 -14581985 + L1Md_F2 LINE L1 5587 6582 0 1 1420 573 272 147 51 chr9 109494192 109494506 -14581666 - RLTR9A LTR ERVK -24 344 1 1 1420 261 292 31 55 chr9 109494594 109494721 -14581451 - RLTR44-int LTR ERVK -40 2772 2649 1 1420 627 331 46 14 chr9 109494854 109495224 -14580948 - RLTR6-int LTR ERV1 -115 7663 7282 1 1420 936 149 105 11 chr9 109495293 109495483 -14580689 - RMER16-int LTR ERVK -1706 3700 3493 1 1420 9194 157 30 43 chr9 109495458 109497230 -14578942 - RMER16-int LTR ERVK -2114 3292 1566 1 1420 370 309 52 52 chr9 109497265 109497477 -14578695 - RMER16-int LTR ERVK -3811 2356 2145 1 1420 895 260 10 123 chr9 109497479 109498063 -14578109 - ETnERV2-int LTR ERVK -3140 2668 2176 1 1420 2167 208 98 33 chr9 109498152 109498815 -14577357 - ETnERV2-int LTR ERVK -5231 2175 1219 1 1420 1487 175 125 2 chr9 109498846 109499201 -14576971 - ETnERV2-int LTR ERVK -4740 666 228 1 1420 482 328 122 54 chr9 109499656 109499991 -14576181 - RLTR9A LTR ERVK -8 360 3 1 1420 4501 167 48 29 chr9 109500000 109500518 -14575654 - RMER17B LTR ERVK -18 940 432 1 1420 662 35 12 0 chr9 109500518 109500603 -14575569 + (GA)n Simple_repeat Simple_repeat 2 87 0 2 1420 4501 167 48 29 chr9 109500603 109501007 -14575165 - RMER17B LTR ERVK -527 431 2 1 1420 269 305 21 0 chr9 109501150 109501245 -14574927 - PB1D10 SINE Alu -2 115 19 3 1420 683 212 97 5 chr9 109501293 109501478 -14574694 - B3 SINE B2 -13 203 2 4 1420 273 279 0 0 chr9 109501484 109501552 -14574620 - ID_B1 SINE B4 0 224 157 5 1420 221 250 32 140 chr9 109501552 109501576 -14574596 - PB1D10 SINE Alu 0 116 35 6 1420 818 217 134 12 chr9 109501633 109501894 -14574278 + ORR1D1 LTR MaLR 1 307 -67 7 1420 185 0 40 0 chr9 109501920 109501945 -14574227 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 8 1420 1220 48 0 0 chr9 109501948 109502094 -14574078 - B1_Mm SINE Alu 0 147 2 9 1420 639 181 20 80 chr9 109502105 109502255 -14573917 - B1_Mus1 SINE Alu -7 141 1 1 1420 321 118 0 0 chr9 109502266 109502317 -14573855 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1420 280 155 42 127 chr9 109502498 109502586 -14573586 + Lx9 LINE L1 7531 7604 -40 1 1420 4983 98 6 6 chr9 109502586 109503288 -14572884 - L1_Mus3 LINE L1 -18 6620 5919 1 1420 280 155 42 127 chr9 109503288 109503317 -14572855 + Lx9 LINE L1 7605 7638 -6 1 1420 246 236 36 0 chr9 109503374 109503429 -14572743 - 7SK RNA RNA -267 64 8 1 1420 663 191 27 41 chr9 109503445 109503592 -14572580 - B1_Mur1 SINE Alu -3 146 2 1 1420 853 145 88 6 chr9 109503922 109504082 -14572090 + B2_Mm2 SINE B2 4 176 -19 1 1420 189 0 0 0 chr9 109504100 109504121 -14572051 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1420 342 301 49 110 chr9 109504279 109504443 -14571729 - RSINE1 SINE B4 -1 164 11 1 1420 343 252 168 16 chr9 109504590 109504715 -14571457 + B1F SINE Alu 1 144 -5 1 1420 23 0 0 0 chr9 109504730 109504753 -14571419 + AT_rich Low_complexity Low_complexity 1 23 0 2 1420 314 274 145 21 chr9 109505147 109505389 -14570783 + L1MDa LINE L1 1608 1879 -4754 2 1420 223 241 0 0 chr9 109505534 109505588 -14570584 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1420 731 292 133 39 chr9 109505604 109506071 -14570101 + L1M2 LINE L1 4676 5186 -957 2 1420 344 360 7 7 chr9 109506146 109506283 -14569889 - B1F SINE Alu -10 139 3 2 1420 319 189 120 40 chr9 109506373 109506481 -14569691 + B1_Mur4 SINE Alu 14 131 -19 2 1420 587 215 8 30 chr9 109506864 109506998 -14569174 - B1_Mur2 SINE Alu -6 143 13 2 1420 423 273 77 39 chr9 109507016 109507172 -14569000 - ID_B1 SINE B4 0 224 63 2 1420 819 162 8 35 chr9 109507205 109507409 -14568763 - B3 SINE B2 -5 190 1 2 1420 261 304 92 98 chr9 109507645 109507798 -14568374 + RSINE1 SINE B4 3 154 -11 2 1420 263 217 149 21 chr9 109508471 109508565 -14567607 + MT2B LTR ERVL 173 278 -323 3 1420 469 186 18 73 chr9 109508490 109508600 -14567572 + B1_Mus2 SINE Alu 46 149 0 3 1420 533 286 13 20 chr9 109508688 109508836 -14567336 - RSINE1 SINE B4 -2 163 17 3 1420 339 246 6 90 chr9 109508836 109508992 -14567180 - URR1B DNA MER1_type 0 225 83 3 1420 480 315 7 0 chr9 109509100 109509246 -14566926 - B1_Mur1 SINE Alu 0 149 3 3 1420 21 0 0 0 chr9 109509248 109509269 -14566903 + AT_rich Low_complexity Low_complexity 1 21 0 3 1420 381 177 0 0 chr9 109509271 109509350 -14566822 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1420 349 82 55 0 chr9 109510917 109510990 -14565182 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 3 1420 207 188 0 0 chr9 109510991 109511039 -14565133 + GA-rich Low_complexity Low_complexity 2 49 0 3 1420 678 108 8 19 chr9 109511168 109511292 -14564880 - B1_Mur4 SINE Alu 0 150 5 3 1420 769 194 15 0 chr9 109511320 109511454 -14564718 + B1_Mur1 SINE Alu 5 140 -9 4 1420 249 250 18 0 chr9 109511658 109511714 -14564458 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1420 905 298 31 11 chr9 109511736 109511997 -14564175 - B4A SINE B4 -20 272 7 4 1420 1128 137 6 0 chr9 109512139 109512321 -14563851 + B2_Mm1t SINE B2 6 188 -5 4 1420 1070 116 12 0 chr9 109512735 109512907 -14563265 + B2_Mm1t SINE B2 6 179 -14 4 1420 343 103 0 39 chr9 109512992 109513059 -14563113 + B2_Mm2 SINE B2 47 109 -107 4 1420 23 54 0 0 chr9 109513063 109513100 -14563072 + AT_rich Low_complexity Low_complexity 1 37 0 4 1420 380 314 28 14 chr9 109513123 109513265 -14562907 + B1F2 SINE Alu 5 148 -1 4 1420 726 210 196 17 chr9 109513273 109513452 -14562720 + B3 SINE B2 2 212 -4 4 1420 353 291 29 0 chr9 109513571 109513674 -14562498 + RSINE1 SINE B4 4 109 -56 4 1420 670 152 68 61 chr9 109513840 109513987 -14562185 - B1_Mur2 SINE Alu 0 149 2 5 1420 670 144 8 46 chr9 109514132 109514263 -14561909 + B2_Mm2 SINE B2 1 126 -69 5 1420 258 32 0 0 chr9 109514305 109514336 -14561836 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1420 303 207 4 31 chr9 109514641 109514729 -14561443 + B1F2 SINE Alu 10 94 -26 5 1420 485 208 66 16 chr9 109514925 109515047 -14561125 + B1_Mur1 SINE Alu 22 149 0 5 1420 31931 104 15 8 chr9 109515121 109521311 -14554861 + L1_Mus1 LINE L1 331 6567 0 5 1420 377 198 22 44 chr9 109521882 109521972 -14554200 - RMER1A Other Other -643 387 300 5 1420 782 264 176 17 chr9 109522027 109522316 -14553856 + MTD LTR MaLR 85 419 0 5 1420 2453 164 31 45 chr9 109522479 109522969 -14553203 + RMER17C-int LTR ERVK 1384 1866 -1372 5 1420 4650 149 39 25 chr9 109523379 109523514 -14552658 + RMER17C-int LTR ERVK 2368 2502 -736 5 1420 360 0 0 0 chr9 109523514 109523554 -14552618 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1420 4650 149 39 25 chr9 109523554 109524272 -14551900 + RMER17C-int LTR ERVK 2503 3233 -5 5 1420 942 243 12 90 chr9 109524277 109524689 -14551483 + RMER17C LTR ERVK 1 380 -30 5 1420 238 264 161 0 chr9 109524719 109524806 -14551366 + RMER10A LTR ERVL 315 415 -27 6 1420 800 280 62 22 chr9 109524823 109525181 -14550991 + L1_Mur3 LINE L1 3994 4365 -1515 6 1420 438 212 92 64 chr9 109525195 109525336 -14550836 + B1_Mur3 SINE Alu 5 149 0 6 1420 294 319 21 0 chr9 109525392 109525486 -14550686 + B3A SINE B2 1 96 -102 6 1420 23 33 0 0 chr9 109525535 109525565 -14550607 + AT_rich Low_complexity Low_complexity 1 30 0 6 1420 613 258 6 30 chr9 109525646 109525814 -14550358 + B3 SINE B2 47 210 -6 6 1420 342 286 9 28 chr9 109525846 109525954 -14550218 + PB1D9 SINE Alu 4 109 -11 6 1420 320 278 0 58 chr9 109526438 109526541 -14549631 + ID_B1 SINE B4 128 224 0 6 1420 868 169 0 11 chr9 109526544 109526724 -14549448 + GA-rich Low_complexity Low_complexity 3 180 0 6 1420 358 274 11 0 chr9 109526756 109526851 -14549321 + B1_Mur1 SINE Alu 49 144 -5 6 1420 295 358 30 0 chr9 109527970 109528104 -14548068 - ID_B1 SINE B4 -2 222 85 7 1420 339 121 0 0 chr9 109528283 109528341 -14547831 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 7 1420 213 196 0 21 chr9 109529177 109529224 -14546948 + B1_Mur2 SINE Alu 99 144 -5 7 1420 223 216 0 19 chr9 109529408 109529460 -14546712 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 7 1420 379 136 38 28 chr9 109529691 109529797 -14546375 + CT-rich Low_complexity Low_complexity 3 109 0 7 1420 590 211 40 47 chr9 109529803 109529952 -14546220 - B1_Mur1 SINE Alu -1 148 1 7 1420 471 147 0 0 chr9 109530170 109530272 -14545900 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 1420 263 329 0 0 chr9 109530278 109530348 -14545824 - B1F SINE Alu -11 138 69 7 1420 768 216 0 7 chr9 109530359 109530508 -14545664 - B3 SINE B2 -68 148 1 7 1420 679 141 15 69 chr9 109530935 109531065 -14545107 - B1_Mur1 SINE Alu -20 129 7 7 1420 389 0 59 0 chr9 109531074 109531125 -14545047 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 8 1420 723 178 14 22 chr9 109531126 109531264 -14544908 - B1_Mur4 SINE Alu -13 137 1 8 1420 556 291 32 48 chr9 109531366 109531554 -14544618 - B3A SINE B2 -4 194 10 8 1420 2892 141 6 144 chr9 109532070 109532422 -14543750 - L1_Mm LINE L1 -121 5762 5501 8 1420 1209 48 7 0 chr9 109532422 109532568 -14543604 - B1_Mus2 SINE Alu 0 147 1 8 1420 2892 141 6 144 chr9 109532568 109532855 -14543317 - L1_Mm LINE L1 -383 5500 5211 8 1420 1330 96 16 0 chr9 109533578 109533766 -14542406 - B2_Mm2 SINE B2 -3 192 2 8 1420 475 245 43 7 chr9 109533771 109533911 -14542261 - B1_Mur3 SINE Alu -2 147 3 8 1420 523 262 8 8 chr9 109533976 109534103 -14542069 + RSINE1 SINE B4 17 143 -22 8 1420 26 0 0 0 chr9 109534103 109534129 -14542043 + AT_rich Low_complexity Low_complexity 1 26 0 8 1420 281 342 77 34 chr9 109534129 109534299 -14541873 + B3 SINE B2 1 165 -33 8 1420 24 32 0 0 chr9 109534515 109534546 -14541626 + AT_rich Low_complexity Low_complexity 1 31 0 9 1420 1034 164 11 0 chr9 109534578 109534755 -14541417 + B2_Mm1t SINE B2 1 179 -14 9 1420 366 150 232 40 chr9 109534821 109534946 -14541226 + B2_Mm2 SINE B2 47 195 0 9 1420 348 268 49 31 chr9 109534956 109535070 -14541102 + B1F SINE Alu 3 116 -1 9 1420 321 268 103 0 chr9 109535652 109535749 -14540423 - Tigger7 DNA MER2_type -2257 234 128 9 1420 254 261 0 0 chr9 109535757 109535822 -14540350 + MTEa LTR MaLR 2 66 -313 9 1420 259 202 9 152 chr9 109535832 109535937 -14540235 + MTEb LTR MaLR 277 366 -13 9 1420 771 187 58 0 chr9 109536042 109536181 -14539991 - B1_Mur2 SINE Alu 0 149 3 9 1420 556 137 42 0 chr9 109536192 109536287 -14539885 - B3 SINE B2 0 216 118 9 1420 279 250 0 59 chr9 109536358 109536426 -14539746 - ID4 SINE ID -17 66 3 9 1420 299 244 53 43 chr9 109536426 109536520 -14539652 - Tigger7 DNA MER2_type -2394 97 3 9 1420 314 297 206 30 chr9 109536652 109536847 -14539325 + B4A SINE B4 1 230 -62 1 1420 475 307 22 0 chr9 109536847 109536984 -14539188 + RSINE1 SINE B4 3 142 -23 1 1420 23 54 0 0 chr9 109537121 109537158 -14539014 + AT_rich Low_complexity Low_complexity 1 37 0 1 1420 533 65 0 0 chr9 109537699 109537776 -14538396 + B1_Mm SINE Alu 71 147 0 1 1420 310 268 68 51 chr9 109537778 109537955 -14538217 + RLTR45-int LTR ERVK 187 366 -6878 1 1420 1968 183 157 42 chr9 109538098 109538594 -14537578 + RMER16-int LTR ERVK 251 803 -4603 1 1420 633 200 25 0 chr9 109538613 109538733 -14537439 + RMER16-int LTR ERVK 938 1060 -5077 1 1420 1240 239 55 24 chr9 109538746 109539037 -14537135 + ETnERV2-int LTR ERVK 2454 2753 -4653 1 1420 6558 186 104 110 chr9 109539072 109541315 -14534857 + RLTR45-int LTR ERVK 4296 6524 -720 1 1420 4438 162 23 4 chr9 109541365 109542060 -14534112 + RLTR45-int LTR ERVK 6495 7202 -204 1 1420 366 372 13 20 chr9 109542277 109542428 -14533744 - RSINE1 SINE B4 -2 163 14 1 1420 5175 152 27 8 chr9 109542637 109543538 -14532634 - RMER16-int LTR ERVK -2923 2483 1566 1 1420 289 281 58 58 chr9 109543595 109543784 -14532388 - SRV_MM-int LTR ERVK -3811 2356 2168 1 1420 1099 274 10 112 chr9 109543807 109544377 -14531795 - ETnERV2-int LTR ERVK -4833 2573 2176 1 1420 959 210 4 30 chr9 109544496 109544711 -14531461 - RMER16-int LTR ERVK -3840 1566 1382 1 1420 835 239 181 0 chr9 109544809 109545069 -14531103 + ORR1D1 LTR MaLR 1 307 -67 1 1420 596 191 19 108 chr9 109545087 109545245 -14530927 - B1_Mus2 SINE Alu -3 144 1 1 1420 566 242 37 25 chr9 109545271 109545462 -14530710 - B3 SINE B2 0 193 2 1 1420 4890 95 23 11 chr9 109545575 109546281 -14529891 - L1_Mus3 LINE L1 -6 6632 5919 1 1420 551 220 26 84 chr9 109546440 109546484 -14529688 - B1_Mur1 SINE Alu -3 146 105 1 1420 5435 120 7 24 chr9 109546484 109546692 -14529480 + RLTR13D1 LTR ERVK 1 206 -600 1 1420 1608 43 0 0 chr9 109546692 109546879 -14529293 + B2_Mm1t SINE B2 2 188 -5 1 1420 5435 120 7 24 chr9 109546879 109547490 -14528682 + RLTR13D1 LTR ERVK 207 806 0 1 1420 551 220 26 84 chr9 109547490 109547599 -14528573 - B1_Mur1 SINE Alu -45 104 2 1 1420 248 349 0 0 chr9 109547541 109547607 -14528565 - B4 SINE B4 -148 144 79 1 1420 1055 94 6 71 chr9 109547937 109548120 -14528052 + B2_Mm2 SINE B2 6 176 -19 1 1420 251 308 0 0 chr9 109548164 109548315 -14527857 + (TG)n Simple_repeat Simple_repeat 1 151 0 1 1420 386 303 49 110 chr9 109548317 109548480 -14527692 - RSINE1 SINE B4 -2 163 11 1 1420 388 252 167 38 chr9 109549168 109549300 -14526872 + B1F1 SINE Alu 1 149 0 1 1420 21 36 0 0 chr9 109549300 109549328 -14526844 + AT_rich Low_complexity Low_complexity 1 28 0 1 1420 233 284 27 0 chr9 109549906 109549980 -14526192 + L1MDa LINE L1 1799 1874 -4759 1 1420 264 237 78 13 chr9 109550060 109550137 -14526035 + B1F SINE Alu 68 149 0 1 1420 372 59 0 0 chr9 109550154 109550205 -14525967 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1420 695 306 121 28 chr9 109550211 109550682 -14525490 + L1M2 LINE L1 4672 5186 -957 1 1420 446 353 7 7 chr9 109550761 109550898 -14525274 - B1F SINE Alu -10 139 3 1 1420 287 196 11 79 chr9 109550987 109551080 -14525092 + B1_Mur4 SINE Alu 15 100 -20 1 1420 840 179 7 0 chr9 109551456 109551596 -14524576 - B1_Mus1 SINE Alu -6 142 2 1 1420 707 146 0 0 chr9 109551633 109551743 -14524429 - B3 SINE B2 -92 124 15 1 1420 2044 83 10 62 chr9 109551751 109552060 -14524112 + L1_Mus2 LINE L1 6272 6564 -2 1 1420 297 318 100 13 chr9 109552295 109552445 -14523727 + RSINE1 SINE B4 3 165 0 1 1420 458 226 0 0 chr9 109553150 109553243 -14522929 + B1_Mus2 SINE Alu 55 147 0 1 1420 427 280 13 47 chr9 109553339 109553487 -14522685 - RSINE1 SINE B4 -6 159 17 1 1420 380 213 12 119 chr9 109553487 109553647 -14522525 - URR1B DNA MER1_type 0 225 83 1 1420 603 232 41 27 chr9 109553752 109553898 -14522274 - B1_Mur1 SINE Alu 0 149 2 1 1420 307 128 0 0 chr9 109553918 109553965 -14522207 - HAL1-3A_ME LINE L1 -837 2021 1975 1 1420 1255 41 0 0 chr9 109554988 109555134 -14521038 + B1_Mus1 SINE Alu 3 148 0 1 1420 228 288 23 39 chr9 109555644 109555774 -14520398 - RMER17A LTR ERVK -265 486 359 1 1420 406 169 17 0 chr9 109555774 109555892 -14520280 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 1420 406 230 120 0 chr9 109555892 109555992 -14520180 + B3 SINE B2 98 209 -7 1 1420 610 82 52 0 chr9 109556001 109556098 -14520074 - B1_Mur4 SINE Alu 0 150 49 1 1420 715 173 47 0 chr9 109556152 109556279 -14519893 + B1_Mur1 SINE Alu 8 140 -9 1 1420 788 305 68 8 chr9 109556555 109556806 -14519366 - B4A SINE B4 -20 272 7 1 1420 1103 148 11 0 chr9 109557371 109557547 -14518625 + B2_Mm1t SINE B2 2 179 -14 1 1420 348 143 356 30 chr9 109557613 109557714 -14518458 + B2_Mm2 SINE B2 47 180 -15 1 1420 1196 68 0 0 chr9 109557721 109557868 -14518304 - B1_Mus2 SINE Alu 0 147 1 1 1420 474 287 21 7 chr9 109557921 109558065 -14518107 + B1F2 SINE Alu 3 148 -1 1 1420 817 183 191 16 chr9 109558073 109558256 -14517916 + B3 SINE B2 2 216 0 1 1420 344 260 42 0 chr9 109558381 109558477 -14517695 + RSINE1 SINE B4 10 109 -56 1 1420 612 179 104 0 chr9 109558620 109558754 -14517418 - B1_Mur2 SINE Alu 0 149 2 1 1420 849 167 78 28 chr9 109558902 109559081 -14517091 + B2_Mm2 SINE B2 2 189 -6 1 1420 325 218 13 45 chr9 109559372 109559493 -14516679 + B1F2 SINE Alu 2 122 -5 1 1420 484 252 41 0 chr9 109559674 109559797 -14516375 + B1_Mur1 SINE Alu 22 149 0 1 1420 23 0 0 0 chr9 109559848 109559871 -14516301 + AT_rich Low_complexity Low_complexity 1 23 0 1 1420 310 223 72 31 chr9 109560397 109560494 -14515678 - RMER1A Other Other -630 400 300 1 1420 680 259 174 30 chr9 109560543 109560841 -14515331 + MTD LTR MaLR 79 419 0 1 1420 2604 152 33 33 chr9 109561004 109561487 -14514685 + RMER17C-int LTR ERVK 1384 1866 -1372 1 1420 4212 159 51 49 chr9 109561900 109562062 -14514110 + RMER17C-int LTR ERVK 2368 2500 -738 1 1420 432 0 0 0 chr9 109562062 109562110 -14514062 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1420 4212 159 51 49 chr9 109562110 109562811 -14513361 + RMER17C-int LTR ERVK 2501 3232 -6 1 1420 956 227 38 78 chr9 109562816 109563212 -14512960 + RMER17C LTR ERVK 1 380 -30 1 1420 841 285 51 17 chr9 109563358 109563708 -14512464 + L1_Mur3 LINE L1 4004 4365 -1515 1 1420 437 221 78 78 chr9 109563722 109563864 -14512308 + B1_Mus2 SINE Alu 5 146 -1 1 1420 325 298 21 0 chr9 109563907 109564001 -14512171 + B3A SINE B2 1 96 -102 1 1420 595 256 6 40 chr9 109564165 109564340 -14511832 + B3 SINE B2 48 216 0 1 1420 289 293 19 39 chr9 109564374 109564477 -14511695 + PB1D9 SINE Alu 9 109 -11 1 1420 348 234 40 60 chr9 109564960 109565060 -14511112 + ID_B1 SINE B4 127 224 0 1 1420 904 124 12 29 chr9 109565062 109565302 -14510870 + GA-rich Low_complexity Low_complexity 1 236 0 1 1420 377 222 61 0 chr9 109565332 109565431 -14510741 + B1_Mur1 SINE Alu 40 144 -5 1 1420 218 164 0 18 chr9 109565484 109565540 -14510632 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1420 201 297 0 15 chr9 109566186 109566251 -14509921 + CT-rich Low_complexity Low_complexity 2 65 0 1 1420 271 311 12 3 chr9 109566618 109566724 -14509448 - ID_B1 SINE B4 -55 169 67 1 1420 304 175 18 0 chr9 109567761 109567818 -14508354 + B1F SINE Alu 87 144 -5 1 1420 616 189 69 42 chr9 109568987 109569131 -14507041 - B1_Mur2 SINE Alu -1 148 1 1 1420 300 27 0 0 chr9 109569336 109569373 -14506799 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1420 255 304 14 0 chr9 109569379 109569448 -14506724 - B1F SINE Alu -11 138 69 1 1420 766 236 0 0 chr9 109569460 109569604 -14506568 - B3 SINE B2 -70 146 3 1 1420 474 179 0 35 chr9 109569753 109569840 -14506332 - B1_Mur3 SINE Alu -59 90 7 1 1420 779 170 0 39 chr9 109569859 109570012 -14506160 - B1_Mus2 SINE Alu 0 147 1 1 1420 485 324 31 31 chr9 109570118 109570312 -14505860 - B3A SINE B2 -4 194 1 1 1420 920 155 41 7 chr9 109570868 109571049 -14505123 + MTC LTR MaLR 1 174 -226 1 1420 447 161 0 36 chr9 109571110 109571194 -14504978 + B1_Mus2 SINE Alu 14 94 -53 1 1420 290 51 0 0 chr9 109571185 109571224 -14504948 - B3 SINE B2 -176 40 2 1 1420 232 123 34 34 chr9 109571789 109571848 -14504324 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 1 1420 642 164 102 0 chr9 109571949 109572077 -14504095 - B1_Mur4 SINE Alu -1 149 9 1 1420 305 317 57 32 chr9 109572505 109572629 -14503543 - RSINE1 SINE B4 -21 144 18 1 1420 7823 100 4 3 chr9 109573008 109574441 -14501731 - L1_Mus3 LINE L1 -5 6633 5201 1 177 12744 55 1 5 chr9 109574962 109577241 -14498931 - L1Md_F2 LINE L1 -12 6570 4302 1 1421 493 279 152 39 chr9 109577241 109577498 -14498674 - RLTR9A LTR ERVK -82 286 1 1 1421 316 317 48 0 chr9 109577623 109577727 -14498445 - PB1D7 SINE Alu -1 119 11 1 1421 296 96 0 37 chr9 109577758 109577812 -14498360 + (TATG)n Simple_repeat Simple_repeat 4 55 0 1 1421 639 234 91 0 chr9 109577818 109577993 -14498179 - B3 SINE B2 -25 191 1 1 1421 779 260 190 0 chr9 109578141 109578399 -14497773 + ORR1D1 LTR MaLR 1 307 -67 1 1421 503 230 20 92 chr9 109578420 109578573 -14497599 - B1_Mus1 SINE Alu -6 142 1 1 1421 757 199 199 0 chr9 109578618 109578789 -14497383 - B3 SINE B2 -10 206 2 1 1421 623 199 27 41 chr9 109579063 109579210 -14496962 - B1_Mur1 SINE Alu -3 146 2 1 1421 1211 108 0 6 chr9 109579534 109579711 -14496461 + B2_Mm2 SINE B2 1 176 -19 1 1421 345 256 0 0 chr9 109579726 109579908 -14496264 + (TG)n Simple_repeat Simple_repeat 1 182 0 1 1421 364 301 61 17 chr9 109579936 109580051 -14496121 - RSINE1 SINE B4 -35 130 11 1 1421 7914 37 8 11 chr9 109580200 109581157 -14495015 + L1Md_F3 LINE L1 5631 6584 0 2 1421 237 352 0 21 chr9 109581206 109581299 -14494873 + PB1 SINE Alu 37 127 0 2 1421 34180 102 6 14 chr9 109581326 109583220 -14492952 + L1Md_F2 LINE L1 446 2305 -3578 2 1421 3400 66 28 2 chr9 109583220 109583645 -14492527 + RLTR10C LTR ERVK 1 436 0 2 1421 34180 58 5 2 chr9 109583645 109586917 -14489255 + L1Md_F2 LINE L1 2306 5585 -298 2 1421 8315 40 4 2 chr9 109586918 109587912 -14488260 + L1Md_F2 LINE L1 5587 6582 0 2 1421 290 275 28 56 chr9 109588412 109588520 -14487652 + ID_B1 SINE B4 119 223 -1 2 1421 306 0 0 0 chr9 109588539 109588573 -14487599 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1421 602 262 106 55 chr9 109588591 109589052 -14487120 + L1M2 LINE L1 4682 5186 -957 2 1421 358 363 7 0 chr9 109589129 109589264 -14486908 - B1F SINE Alu -11 138 3 2 1421 365 252 118 27 chr9 109589353 109589463 -14486709 + B1_Mur4 SINE Alu 15 134 -16 2 1421 577 267 0 7 chr9 109589852 109589988 -14486184 - B1_Mur4 SINE Alu -15 135 1 2 1421 399 307 58 19 chr9 109589993 109590149 -14486023 - ID_B1 SINE B4 0 224 63 2 1421 3279 33 0 25 chr9 109590198 109590601 -14485571 + L1Md_F3 LINE L1 6192 6584 0 2 1421 791 114 8 0 chr9 109590670 109590793 -14485379 - B3 SINE B2 -92 124 1 2 1421 336 306 105 39 chr9 109591029 109591182 -14484990 + RSINE1 SINE B4 3 165 0 2 1421 541 194 0 0 chr9 109591846 109591949 -14484223 + B1_Mus2 SINE Alu 45 147 0 2 1421 546 272 13 20 chr9 109592045 109592195 -14483977 - RSINE1 SINE B4 -2 163 15 2 1421 463 199 13 87 chr9 109592197 109592346 -14483826 - URR1B DNA MER1_type -5 220 83 2 1421 394 276 19 76 chr9 109592452 109592609 -14483563 - B1_Mur2 SINE Alu 0 149 2 2 1421 459 173 0 0 chr9 109592639 109592778 -14483394 + (TG)n Simple_repeat Simple_repeat 2 140 0 2 1421 306 204 0 0 chr9 109594365 109594473 -14481699 + GA-rich Low_complexity Low_complexity 2 109 0 2 1421 303 257 122 0 chr9 109594515 109594589 -14481583 + B3 SINE B2 102 184 -32 2 1421 531 149 11 0 chr9 109594585 109594672 -14481500 - B1_Mur4 SINE Alu -16 134 47 2 1421 628 217 54 0 chr9 109594721 109594850 -14481322 + B1_Mur2 SINE Alu 5 140 -9 2 1421 627 121 0 0 chr9 109595070 109595169 -14481003 + (TA)n Simple_repeat Simple_repeat 1 99 0 2 1421 812 317 41 22 chr9 109595184 109595455 -14480717 - B4A SINE B4 -10 282 7 2 1421 513 278 21 7 chr9 109596029 109596174 -14479998 + B1F2 SINE Alu 3 149 0 2 1421 774 200 191 16 chr9 109596196 109596379 -14479793 + B3 SINE B2 2 216 0 2 1421 416 243 29 0 chr9 109596498 109596601 -14479571 + RSINE1 SINE B4 4 109 -56 2 1421 610 167 106 0 chr9 109596742 109596874 -14479298 - B1_Mur2 SINE Alu 0 149 4 2 1421 813 150 0 0 chr9 109597033 109597166 -14479006 + B2_Mm2 SINE B2 7 139 -56 2 1421 437 205 8 120 chr9 109597551 109597684 -14478488 + B1_Mur4 SINE Alu 30 147 0 2 1421 555 252 35 0 chr9 109597802 109597945 -14478227 + B1_Mur1 SINE Alu 2 149 0 2 1421 378 205 24 17 chr9 109598534 109598635 -14477537 - RMER1A Other Other -648 382 300 2 1421 583 310 32 11 chr9 109598685 109598874 -14477298 + MTD LTR MaLR 80 272 -147 2 1421 246 187 75 62 chr9 109598890 109598970 -14477202 + MTD LTR MaLR 332 412 -7 2 1421 4975 217 86 60 chr9 109599136 109600830 -14475342 + RMER17C-int LTR ERVK 1384 3121 -117 2 1421 986 177 85 147 chr9 109600857 109601294 -14474878 + RMER17C LTR ERVK 1 410 0 2 1421 651 267 87 25 chr9 109601436 109601759 -14474413 + L1_Mur3 LINE L1 4020 4362 -1518 2 1421 377 186 197 71 chr9 109601776 109601903 -14474269 + B1_Mus2 SINE Alu 5 147 0 2 1421 360 250 239 19 chr9 109601922 109602081 -14474091 + B3A SINE B2 1 194 -4 2 1421 265 250 0 0 chr9 109602096 109602164 -14474008 + L1M2 LINE L1 4404 4471 -1672 2 1421 460 271 73 79 chr9 109602187 109602351 -14473821 + B3 SINE B2 47 209 -7 2 1421 292 311 0 28 chr9 109602394 109602503 -14473669 + PB1D9 SINE Alu 4 109 -11 2 1421 413 244 32 32 chr9 109602961 109603084 -14473088 + ID_B1 SINE B4 102 224 0 2 1421 304 145 14 28 chr9 109603084 109603155 -14473017 + GA-rich Low_complexity Low_complexity 3 72 0 2 1421 314 261 66 137 chr9 109603189 109603371 -14472801 + B4 SINE B4 124 292 0 2 1421 21 36 0 0 chr9 109603407 109603435 -14472737 + AT_rich Low_complexity Low_complexity 1 28 0 2 1421 281 328 69 0 chr9 109604433 109604564 -14471608 - B1_Mus1 SINE Alu -8 140 1 2 1421 1146 69 0 17 chr9 109604760 109604937 -14471235 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 2 1421 280 184 0 0 chr9 109605796 109605845 -14470327 + B1F SINE Alu 95 143 -6 2 1421 218 220 16 33 chr9 109606033 109606094 -14470078 + (CATA)n Simple_repeat Simple_repeat 3 62 0 2 1421 395 114 29 0 chr9 109606265 109606335 -14469837 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 2 1421 615 196 51 29 chr9 109606338 109606475 -14469697 - B1_Mur1 SINE Alu -9 140 1 2 1421 414 0 0 0 chr9 109606679 109606725 -14469447 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1421 255 224 33 56 chr9 109606731 109606821 -14469351 - B1F SINE Alu -11 138 51 2 1421 731 234 7 0 chr9 109606816 109606961 -14469211 - B3 SINE B2 -70 146 1 2 1421 245 343 9 18 chr9 109607214 109607324 -14468848 - MLT1D LTR MaLR -131 374 266 2 1421 604 182 16 24 chr9 109607383 109607507 -14468665 - B1_Mur1 SINE Alu -20 129 7 2 1421 354 273 43 60 chr9 109607403 109607520 -14468652 - B4 SINE B4 -95 197 83 2 1421 787 166 0 40 chr9 109607528 109607679 -14468493 - B1_Mus2 SINE Alu -2 145 1 2 1421 608 302 30 40 chr9 109607781 109607981 -14468191 - B3A SINE B2 0 198 1 2 1421 966 161 0 0 chr9 109608528 109608696 -14467476 + MTC LTR MaLR 1 168 -253 2 1421 7061 13 0 0 chr9 109608720 109609504 -14466668 + L1Md_T LINE L1 4803 5586 -297 2 1421 8292 50 0 0 chr9 109609504 109610498 -14465674 + L1Md_T LINE L1 5587 6580 -2 2 1421 259 217 11 117 chr9 109610567 109610661 -14465511 + MT2B LTR ERVL 169 252 -349 2 1421 430 142 18 22 chr9 109610580 109610677 -14465495 + B1_Mus2 SINE Alu 14 114 -35 2 1421 244 103 0 0 chr9 109610653 109610692 -14465480 - B3 SINE B2 -176 40 2 2 1421 205 161 0 0 chr9 109611195 109611226 -14464946 + T-rich Low_complexity Low_complexity 5 35 0 2 1421 476 98 0 35 chr9 109611423 109611508 -14464664 + (T)n Simple_repeat Simple_repeat 1 82 0 2 1421 804 64 0 5 chr9 109611516 109611622 -14464550 + L1Md_F2 LINE L1 5493 5614 -686 2 1421 8935 32 2 3 chr9 109611623 109612620 -14463552 + L1Md_F2 LINE L1 5587 6582 0 2 1421 25218 122 18 3 chr9 109612623 109612846 -14463326 - L1_Mm LINE L1 -381 5502 5267 2 1421 1313 48 0 0 chr9 109612846 109612993 -14463179 - B1_Mus2 SINE Alu 0 147 1 2 1421 25218 122 18 3 chr9 109612993 109616654 -14459518 - L1_Mm LINE L1 -617 5266 1563 2 1421 27 49 0 0 chr9 109616654 109616695 -14459477 + AT_rich Low_complexity Low_complexity 1 41 0 2 1421 259 376 29 0 chr9 109616700 109616811 -14459361 + B1F SINE Alu 3 114 -3 2 1421 480 308 62 25 chr9 109617319 109617479 -14458693 - Tigger7 DNA MER2_type -2205 286 121 2 1421 252 258 14 9 chr9 109617480 109617569 -14458603 + MTEa LTR MaLR 2 88 -291 2 1421 357 194 51 51 chr9 109617554 109617652 -14458520 + MTEa LTR MaLR 277 374 -5 2 1421 581 206 94 8 chr9 109617755 109617882 -14458290 - B1_Mur2 SINE Alu -7 142 5 2 1421 513 211 35 52 chr9 109617894 109618009 -14458163 - B3 SINE B2 -1 215 103 2 1421 340 256 43 32 chr9 109618125 109618218 -14457954 - Tigger7 DNA MER2_type -2395 96 3 2 1421 303 298 17 59 chr9 109618350 109618543 -14457629 + B4A SINE B4 1 227 -65 2 1421 448 338 29 7 chr9 109618543 109618680 -14457492 + RSINE1 SINE B4 3 142 -23 2 1421 621 241 130 17 chr9 109618898 109619075 -14457097 - B3 SINE B2 -19 197 1 2 1421 476 324 27 14 chr9 109619513 109619660 -14456512 - RSINE1 SINE B4 -1 164 16 2 1421 458 252 84 53 chr9 109619975 109620184 -14455988 - RLTR9A LTR ERVK -3 400 194 2 1421 228 313 29 15 chr9 109620152 109620220 -14455952 - 7SK RNA RNA -261 70 2 2 1421 549 229 42 28 chr9 109620230 109620374 -14455798 - B1_Mus2 SINE Alu 0 147 2 2 1421 989 171 6 0 chr9 109620705 109620881 -14455291 + B2_Mm2 SINE B2 1 177 -18 2 1421 342 173 0 0 chr9 109620895 109620970 -14455202 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1421 487 260 58 58 chr9 109621070 109621225 -14454947 - RSINE1 SINE B4 0 165 11 2 1421 283 248 192 32 chr9 109621358 109621483 -14454689 + B1F SINE Alu 1 145 -4 2 1421 322 326 94 26 chr9 109621933 109622166 -14454006 + L1MDa LINE L1 1631 1879 -4754 2 1421 268 258 85 47 chr9 109622212 109622242 -14453930 + B1_Mur1 SINE Alu 38 147 -2 2 1421 285 267 40 13 chr9 109622242 109622318 -14453854 + ID_B1 SINE B4 145 222 -2 2 1421 555 306 150 24 chr9 109622356 109622815 -14453357 + L1M2 LINE L1 4672 5188 -955 2 1421 185 65 32 0 chr9 109622830 109622861 -14453311 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1421 490 309 8 8 chr9 109622912 109623039 -14453133 - B1F SINE Alu -10 139 13 2 1421 427 163 154 55 chr9 109623135 109623245 -14452927 + B1_Mur4 SINE Alu 15 135 -15 2 1421 632 219 24 7 chr9 109623581 109623719 -14452453 - B1_Mur2 SINE Alu -6 143 2 2 1421 249 305 62 10 chr9 109623732 109623828 -14452344 - B1F SINE Alu -1 148 48 2 1421 455 294 55 16 chr9 109623759 109623887 -14452285 - ID_B1 SINE B4 -29 195 63 2 1421 789 206 19 45 chr9 109623917 109624126 -14452046 - B3 SINE B2 0 193 1 2 1421 253 261 54 54 chr9 109625147 109625240 -14450932 + B1_Mus2 SINE Alu 12 104 -43 2 1421 472 256 43 0 chr9 109625248 109625365 -14450807 + B1_Mus1 SINE Alu 26 148 0 2 1421 542 276 13 27 chr9 109625461 109625610 -14450562 - RSINE1 SINE B4 -2 163 17 2 1421 522 219 162 86 chr9 109625610 109625820 -14450352 - URR1A DNA MER1_type 0 226 1 3 1421 581 274 22 0 chr9 109625859 109625994 -14450178 - B1_Mur1 SINE Alu 0 149 12 3 1421 275 316 48 95 chr9 109625864 109626011 -14450161 - B4A SINE B4 -72 220 81 3 1421 228 67 0 0 chr9 109626032 109626062 -14450110 + (TATG)n Simple_repeat Simple_repeat 4 33 0 3 1421 456 19 0 0 chr9 109627683 109627736 -14448436 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1421 764 214 8 0 chr9 109627736 109627862 -14448310 + ETnERV2-int LTR ERVK 7070 7196 -210 3 1421 367 236 65 54 chr9 109628447 109628631 -14447541 + RLTR19-int LTR ERVK 181 366 -6878 3 1421 517 233 98 20 chr9 109628688 109628841 -14447331 + RLTR19-int LTR ERVK 524 688 -5449 3 1421 678 192 25 0 chr9 109628828 109628948 -14447224 + RLTR19-int LTR ERVK 938 1060 -5077 3 1421 12265 216 78 82 chr9 109628963 109633517 -14442655 + ETnERV2-int LTR ERVK 2935 7196 -210 3 1421 531 0 0 0 chr9 109633913 109633972 -14442200 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1421 673 116 62 0 chr9 109634011 109634127 -14442045 - B1_Mur4 SINE Alu -5 145 5 3 1421 342 246 163 54 chr9 109634127 109634139 -14442033 - ID_B1 SINE B4 -4 219 78 3 1421 629 234 62 0 chr9 109634158 109634286 -14441886 + B1_Mur1 SINE Alu 5 140 -9 3 1421 786 303 82 23 chr9 109634561 109634818 -14441354 - B4A SINE B4 -20 272 1 3 1421 481 299 21 7 chr9 109635363 109635508 -14440664 + B1F2 SINE Alu 3 149 0 3 1421 745 197 202 27 chr9 109635532 109635715 -14440457 + B3 SINE B2 2 216 0 3 1421 452 233 29 0 chr9 109635834 109635937 -14440235 + RSINE1 SINE B4 4 109 -56 3 1421 233 0 39 78 chr9 109636051 109636102 -14440070 + (TTTTTG)n Simple_repeat Simple_repeat 1 49 0 3 1421 533 171 187 0 chr9 109636112 109636235 -14439937 - B1_Mur2 SINE Alu 0 149 4 3 1421 273 57 0 0 chr9 109636327 109636362 -14439810 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1421 904 134 88 55 chr9 109636406 109636588 -14439584 + B2_Mm2 SINE B2 1 188 -7 3 1421 258 116 0 0 chr9 109636593 109636636 -14439536 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1421 218 292 72 96 chr9 109636888 109636926 -14439246 + B4A SINE B4 46 80 -212 3 1421 357 237 10 97 chr9 109636926 109637029 -14439143 + B1F2 SINE Alu 2 95 -54 3 1421 705 201 34 14 chr9 109637166 109637312 -14438860 + B1_Mur1 SINE Alu 1 149 0 3 1421 1479 187 85 109 chr9 109637581 109637983 -14438189 + RLTR9C LTR ERVK 2 393 0 3 1421 2119 214 9 5 chr9 109638221 109638666 -14437506 + L1_Mur1 LINE L1 4740 5186 -700 3 1421 607 295 27 152 chr9 109638658 109639034 -14437138 + L1VL1 LINE L1 29 357 -6065 3 1421 409 270 40 15 chr9 109639085 109639266 -14436906 + L1Md_F LINE L1 526 800 -5819 3 1421 2667 180 9 2 chr9 109639251 109639792 -14436380 + L1Md_F LINE L1 728 1206 -5413 3 1421 1741 84 0 0 chr9 109639801 109640040 -14436132 + L1_Mus2 LINE L1 3825 4063 -1820 3 1421 10013 93 5 3 chr9 109640040 109642131 -14434041 + L1_Mus2 LINE L1 4468 6566 0 3 1421 3153 164 74 32 chr9 109642125 109642282 -14433890 + L1Md_F LINE L1 5149 5302 -584 3 1421 2534 102 42 11 chr9 109642282 109642640 -14433532 + L1Md_F2 LINE L1 6202 6570 -12 3 1421 3153 164 74 32 chr9 109642640 109643106 -14433066 + L1Md_F LINE L1 5303 5798 -88 3 1421 4352 169 26 36 chr9 109643106 109643591 -14432581 + RMER17C-int LTR ERVK 2319 2763 -475 3 1421 3152 68 37 3 chr9 109643591 109643974 -14432198 - MTA_Mm LTR MaLR 0 396 1 3 1421 4352 171 32 45 chr9 109643974 109644433 -14431739 + RMER17C-int LTR ERVK 2764 3235 -3 3 1421 1212 209 39 92 chr9 109644436 109644869 -14431303 + RMER17C LTR ERVK 1 410 0 3 1421 744 297 40 9 chr9 109645007 109645353 -14430819 + L1_Mur3 LINE L1 4006 4362 -1518 3 1421 430 206 127 60 chr9 109645378 109645512 -14430660 + B1_Mur1 SINE Alu 5 147 -2 3 1421 344 269 0 63 chr9 109645524 109645635 -14430537 + B3A SINE B2 12 115 -83 3 1421 583 285 25 25 chr9 109645782 109645944 -14430228 + B3 SINE B2 47 208 -8 3 1421 245 324 9 37 chr9 109645994 109646103 -14430069 + PB1D9 SINE Alu 4 109 -11 3 1421 388 250 0 35 chr9 109646587 109646674 -14429498 + ID_B1 SINE B4 127 210 -14 3 1421 429 20 0 0 chr9 109646674 109646724 -14429448 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 1421 430 214 29 58 chr9 109646759 109646863 -14429309 + B1_Mur1 SINE Alu 49 149 0 3 1421 258 354 62 0 chr9 109647988 109648118 -14428054 - B1_Mus1 SINE Alu -2 146 9 3 1421 651 13 0 0 chr9 109648293 109648369 -14427803 + (GGAA)n Simple_repeat Simple_repeat 3 78 0 3 1421 297 241 11 33 chr9 109649433 109649523 -14426649 + (CATA)n Simple_repeat Simple_repeat 3 90 0 3 1421 8234 41 12 5 chr9 109649638 109651160 -14425012 - L1Md_F2 LINE L1 0 6582 5051 3 1421 708 190 40 40 chr9 109651299 109651447 -14424725 - B1_Mur1 SINE Alu -1 148 1 3 1421 1070 143 0 0 chr9 109651891 109652059 -14424113 + MTC LTR MaLR 1 168 -253 3 1421 425 214 40 28 chr9 109652125 109652235 -14423937 + B1_Mus2 SINE Alu 2 112 -35 3 1421 241 307 68 19 chr9 109652160 109652203 -14423969 + MT2B LTR ERVL 194 273 -328 3 1421 262 128 21 0 chr9 109652203 109652250 -14423922 - B3 SINE B2 -167 49 2 3 1421 241 307 68 19 chr9 109652250 109652263 -14423909 + MT2B LTR ERVL 274 301 -300 3 1421 203 286 15 73 chr9 109652640 109652708 -14423464 + MIR SINE MIR 20 83 -125 3 1421 210 71 0 0 chr9 109652754 109652782 -14423390 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1421 26958 123 13 7 chr9 109652994 109658122 -14418050 - L1_Mus2 LINE L1 -1 6565 515 3 1421 22 80 0 0 chr9 109658371 109658421 -14417751 + AT_rich Low_complexity Low_complexity 1 50 0 3 1421 846 259 16 0 chr9 109658453 109658646 -14417526 - B3 SINE B2 -20 196 1 3 1421 435 347 20 13 chr9 109659085 109659237 -14416935 - RSINE1 SINE B4 -1 164 12 3 1421 628 291 133 47 chr9 109659548 109659887 -14416285 - RLTR9A LTR ERVK 0 368 1 3 1421 225 0 0 0 chr9 109659908 109659933 -14416239 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1421 353 287 12 112 chr9 109659988 109660149 -14416023 - IAP-d-int LTR ERVK -21 6521 6377 3 1421 905 313 22 14 chr9 109660264 109660630 -14415542 - RLTR6-int LTR ERV1 -107 7671 7303 3 1421 856 148 26 62 chr9 109660722 109660917 -14415255 - RMER16-int LTR ERVK -1708 3698 3511 3 1421 9738 150 28 21 chr9 109660901 109662638 -14413534 - RMER16-int LTR ERVK -2114 3292 1566 3 1421 3094 47 0 0 chr9 109662820 109663164 -14413008 - ORR1A1 LTR MaLR -2 344 1 3 1421 1065 249 5 118 chr9 109663227 109663806 -14412366 - RMER16-int LTR ERVK -3683 3561 3196 3 1421 3656 187 7 28 chr9 109663886 109664315 -14411857 - RMER16-int LTR ERVK -3808 1598 1180 3 1421 1334 114 11 5 chr9 109664315 109664500 -14411672 + B2_Mm2 SINE B2 1 186 -9 3 1421 3656 187 7 28 chr9 109664500 109664786 -14411386 - RMER16-int LTR ERVK -4227 1179 900 3 1421 1862 160 126 33 chr9 109664784 109665238 -14410934 - RMER16-int LTR ERVK -4740 666 192 3 1421 495 87 0 0 chr9 109665238 109665307 -14410865 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1421 617 254 167 58 chr9 109665706 109666036 -14410136 - RLTR9A LTR ERVK 0 368 3 3 1421 370 306 24 12 chr9 109666155 109666274 -14409898 - PB1D10 SINE Alu -20 129 15 3 1421 614 251 96 0 chr9 109666300 109666487 -14409685 - B3 SINE B2 -7 209 5 3 1421 346 276 23 0 chr9 109666489 109666576 -14409596 - ID_B1 SINE B4 0 224 136 3 1421 305 224 30 141 chr9 109666576 109666587 -14409585 - PB1D10 SINE Alu 0 116 30 3 1421 826 233 189 18 chr9 109666636 109666916 -14409256 + ORR1D1 LTR MaLR 1 328 -46 3 1421 321 241 13 0 chr9 109667027 109667106 -14409066 - MLT1A0 LTR MaLR -32 333 254 3 1421 490 185 27 27 chr9 109667110 109667221 -14408951 - B1_Mus2 SINE Alu -31 116 6 3 1421 559 249 213 0 chr9 109667267 109667436 -14408736 - B3 SINE B2 -10 206 2 3 1421 231 233 46 55 chr9 109667469 109667548 -14408624 + Lx9 LINE L1 7531 7603 -41 3 1421 5043 86 29 3 chr9 109667548 109668246 -14407926 - L1_Mus3 LINE L1 -4 6634 5919 3 1421 231 233 46 55 chr9 109668246 109668275 -14407897 + Lx9 LINE L1 7604 7637 -7 3 1421 657 197 28 28 chr9 109668382 109668523 -14407649 - B1_Mur1 SINE Alu -7 142 2 3 1421 713 104 289 7 chr9 109668864 109668999 -14407173 + B2_Mm2 SINE B2 4 176 -19 3 1421 336 338 0 0 chr9 109669016 109669247 -14406925 + (TG)n Simple_repeat Simple_repeat 1 231 0 3 1421 378 316 82 15 chr9 109669253 109669388 -14406784 - RSINE1 SINE B4 -11 154 11 3 1421 329 248 9 94 chr9 109669542 109669664 -14406508 + PB1D7 SINE Alu 6 125 -2 3 1421 23 0 0 0 chr9 109669677 109669700 -14406472 + AT_rich Low_complexity Low_complexity 1 23 0 3 1421 225 258 76 33 chr9 109670257 109670281 -14405891 + B1_Mur1 SINE Alu 52 147 -2 3 1421 228 284 44 15 chr9 109670281 109670349 -14405823 + ID_B1 SINE B4 153 222 -2 3 1421 351 0 0 0 chr9 109670368 109670407 -14405765 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1421 274 221 31 31 chr9 109670413 109670511 -14405661 + L1M2 LINE L1 4672 4769 -1374 3 1421 668 286 67 25 chr9 109670598 109670881 -14405291 + L1M2 LINE L1 4892 5186 -957 3 1421 372 353 7 7 chr9 109670958 109671095 -14405077 - B1F SINE Alu -10 139 3 3 1421 220 278 52 62 chr9 109671161 109671257 -14404915 + B4 SINE B4 73 167 -125 3 1421 350 234 117 36 chr9 109671184 109671295 -14404877 + B1_Mur4 SINE Alu 15 134 -16 3 1421 373 104 14 69 chr9 109671325 109671470 -14404702 + T-rich Low_complexity Low_complexity 1 137 0 3 1421 303 215 0 41 chr9 109671470 109671549 -14404623 + (TTGGGG)n Simple_repeat Simple_repeat 5 80 0 3 1421 261 0 0 0 chr9 109671549 109671578 -14404594 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 3 1421 303 215 0 41 chr9 109671578 109671595 -14404577 + (TTGGGG)n Simple_repeat Simple_repeat 6 22 0 3 1421 640 192 8 15 chr9 109671916 109672048 -14404124 - B1_Mur2 SINE Alu -6 143 13 3 1421 402 280 76 45 chr9 109672066 109672223 -14403949 - ID_B1 SINE B4 0 224 63 3 1421 832 113 0 0 chr9 109672392 109672516 -14403656 - B3 SINE B2 -92 124 1 3 1421 265 288 114 41 chr9 109672752 109672875 -14403297 + RSINE1 SINE B4 3 134 -31 3 1421 22 56 0 0 chr9 109672920 109672956 -14403216 + AT_rich Low_complexity Low_complexity 1 36 0 3 1421 419 177 0 17 chr9 109673611 109673717 -14402455 + B1_Mur3 SINE Alu 55 147 0 3 1421 495 299 13 20 chr9 109673791 109673939 -14402233 - RSINE1 SINE B4 -2 163 17 3 1421 377 213 12 135 chr9 109673939 109674102 -14402070 - URR1B DNA MER1_type 0 225 83 3 1421 615 267 14 0 chr9 109674209 109674355 -14401817 - B1_Mur1 SINE Alu 0 149 2 3 1421 222 231 0 0 chr9 109674372 109674437 -14401735 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1421 551 120 9 0 chr9 109676004 109676112 -14400060 + (GA)n Simple_repeat Simple_repeat 1 109 0 4 1421 3835 129 58 142 chr9 109676142 109676558 -14399614 + RMER17D2 LTR ERVK 1 339 -470 4 1421 999 88 81 0 chr9 109676558 109676694 -14399478 - B1_Mus2 SINE Alu 0 147 1 4 1421 3835 129 58 142 chr9 109676694 109677161 -14399011 + RMER17D2 LTR ERVK 340 809 0 4 1421 553 240 101 17 chr9 109677163 109677285 -14398887 + RMER17A-int LTR ERVK 3 129 -1599 4 1421 849 92 0 0 chr9 109677285 109677427 -14398745 + (TC)n Simple_repeat Simple_repeat 1 142 0 4 1421 553 240 101 17 chr9 109677427 109677482 -14398690 + RMER17A-int LTR ERVK 130 195 -1533 4 1421 6328 151 38 51 chr9 109677613 109678883 -14397289 + RMER17A-int LTR ERVK 468 1720 -8 4 1421 4584 116 12 68 chr9 109678892 109679749 -14396423 + RMER17D2 LTR ERVK 1 809 0 4 1421 243 194 32 0 chr9 109679750 109679843 -14396329 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1421 429 230 120 0 chr9 109679843 109679943 -14396229 + B3 SINE B2 98 209 -7 4 1421 656 121 10 0 chr9 109679957 109680056 -14396116 - B1_Mur4 SINE Alu -4 146 47 4 1421 724 224 15 0 chr9 109680099 109680233 -14395939 + B1_Mur1 SINE Alu 5 140 -9 4 1421 685 312 53 25 chr9 109680539 109680782 -14395390 - B4A SINE B4 -36 256 7 4 1421 455 39 0 0 chr9 109680940 109680991 -14395181 + L1Md_T LINE L1 5536 5586 -297 4 1421 9172 5 0 0 chr9 109680991 109681987 -14394185 + L1Md_T LINE L1 5587 6582 0 4 1421 1014 144 29 0 chr9 109682414 109682587 -14393585 + B2_Mm1t SINE B2 2 179 -14 4 1421 269 164 0 18 chr9 109682679 109682735 -14393437 + B2_Mm2 SINE B2 47 101 -94 4 1421 352 289 26 0 chr9 109682807 109682921 -14393251 + PB1D9 SINE Alu 3 119 -1 4 1421 791 200 191 16 chr9 109682929 109683112 -14393060 + B3 SINE B2 2 216 0 4 1421 363 287 50 0 chr9 109683231 109683332 -14392840 + RSINE1 SINE B4 4 109 -56 4 1421 647 175 77 42 chr9 109683480 109683623 -14392549 - B1_Mur2 SINE Alu 0 149 2 4 1421 867 162 73 34 chr9 109683773 109683952 -14392220 + B2_Mm2 SINE B2 4 189 -6 4 1421 351 0 0 0 chr9 109683953 109683992 -14392180 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1421 329 200 1 67 chr9 109684282 109684406 -14391766 + B1F2 SINE Alu 2 112 -38 4 1421 489 257 35 7 chr9 109684564 109684705 -14391467 + B1_Mur1 SINE Alu 5 149 0 4 1421 7809 76 1 0 chr9 109684760 109685792 -14390380 + L1_Mus2 LINE L1 5534 6566 0 4 1421 754 296 10 15 chr9 109686439 109686645 -14389527 + MTD LTR MaLR 80 284 -135 4 1421 2650 144 38 36 chr9 109686878 109687376 -14388796 + RMER17C-int LTR ERVK 1368 1866 -1372 4 1421 4527 146 44 41 chr9 109687789 109687924 -14388248 + RMER17C-int LTR ERVK 2368 2502 -736 4 1421 573 42 0 0 chr9 109687924 109687996 -14388176 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 1421 4527 146 44 41 chr9 109687996 109688723 -14387449 + RMER17C-int LTR ERVK 2503 3233 -5 4 1421 1122 219 28 61 chr9 109688728 109689121 -14387051 + RMER17C LTR ERVK 1 380 -30 4 1421 767 278 65 20 chr9 109689257 109689613 -14386559 + L1_Mur3 LINE L1 3994 4365 -1515 4 1421 374 227 90 90 chr9 109689627 109689772 -14386400 + B1_Mur3 SINE Alu 5 149 0 4 1421 222 62 0 0 chr9 109689772 109689804 -14386368 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 4 1421 299 269 32 0 chr9 109689830 109689923 -14386249 + B3A SINE B2 1 96 -102 4 1421 420 55 0 0 chr9 109689958 109690013 -14386159 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1421 297 0 0 0 chr9 109690013 109690045 -14386127 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1421 248 217 43 0 chr9 109690062 109690131 -14386041 + L1M2 LINE L1 4400 4471 -1672 4 1421 488 231 20 204 chr9 109690139 109690335 -14385837 + B3 SINE B2 31 210 -6 4 1421 280 305 9 28 chr9 109690352 109690460 -14385712 + PB1D9 SINE Alu 4 109 -11 4 1421 1058 135 0 6 chr9 109691024 109691203 -14384969 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4 1421 428 211 68 0 chr9 109691231 109691347 -14384825 + B1F2 SINE Alu 17 144 -5 4 1421 234 0 0 0 chr9 109691400 109691426 -14384746 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1421 354 23 0 0 chr9 109691426 109691468 -14384704 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1421 221 336 66 0 chr9 109692513 109692650 -14383522 - B1_Mus1 SINE Alu -2 146 1 4 1421 629 88 0 10 chr9 109692824 109692927 -14383245 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 4 1421 262 188 0 0 chr9 109693764 109693812 -14382360 + B1F SINE Alu 95 142 -7 4 1421 207 235 0 19 chr9 109694009 109694061 -14382111 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 4 1421 183 80 0 0 chr9 109694292 109694317 -14381855 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 4 1421 573 204 40 47 chr9 109694332 109694481 -14381691 - B1_Mur1 SINE Alu -1 148 1 4 1421 249 57 0 0 chr9 109694684 109694719 -14381453 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1421 228 357 0 0 chr9 109694725 109694795 -14381377 - B1F SINE Alu -11 138 69 4 1421 775 204 7 7 chr9 109694806 109694954 -14381218 - B3 SINE B2 -68 148 1 4 1421 255 326 11 21 chr9 109695204 109695298 -14380874 - MLT1D LTR MaLR -131 374 282 4 1421 577 192 16 32 chr9 109695376 109695500 -14380672 - B1_Mur1 SINE Alu -21 128 7 4 1421 387 0 0 0 chr9 109695509 109695552 -14380620 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1421 657 182 22 22 chr9 109695556 109695691 -14380481 - B1_Mur4 SINE Alu -15 135 1 4 1421 514 291 42 47 chr9 109695789 109695980 -14380192 - B3A SINE B2 0 198 9 4 1421 915 174 8 2 chr9 109696532 109696719 -14379453 + MTC LTR MaLR 1 188 -231 4 1421 253 258 33 120 chr9 109696712 109696776 -14379396 + MT2B LTR ERVL 119 253 -346 4 1421 463 136 0 36 chr9 109696776 109696860 -14379312 + B1_Mus2 SINE Alu 14 94 -53 4 1421 812 198 116 0 chr9 109697048 109697220 -14378952 + B3 SINE B2 9 200 -16 4 1421 525 300 6 12 chr9 109697289 109697451 -14378721 + B3A SINE B2 2 162 -36 4 1421 21 71 0 0 chr9 109697451 109697493 -14378679 + AT_rich Low_complexity Low_complexity 1 42 0 4 1421 31 0 0 0 chr9 109698313 109698344 -14377828 + AT_rich Low_complexity Low_complexity 1 31 0 4 1421 1017 206 121 81 chr9 109698390 109698589 -14377583 + MER67C LTR ERV1 256 474 -237 4 1421 1227 69 67 17 chr9 109698589 109698767 -14377405 + B2_Mm2 SINE B2 1 187 -8 4 1421 1017 206 121 81 chr9 109698767 109698915 -14377257 + MER67C LTR ERV1 475 617 -94 4 1421 327 350 24 30 chr9 109698955 109699120 -14377052 + RSINE1 SINE B4 2 165 0 4 1421 1378 78 6 6 chr9 109699507 109699688 -14376484 + B2_Mm2 SINE B2 1 181 -14 4 1421 470 281 92 23 chr9 109699766 109699897 -14376275 - RSINE1 SINE B4 -23 142 3 4 1421 703 257 55 55 chr9 109700182 109700400 -14375772 - B4 SINE B4 -5 287 70 4 1421 644 167 92 0 chr9 109700982 109701102 -14375070 - ID_B1 SINE B4 -2 222 92 4 1421 522 304 25 144 chr9 109701298 109701617 -14374555 + B4A SINE B4 12 292 0 4 1421 695 43 0 0 chr9 109701764 109701856 -14374316 + B1_Mus2 SINE Alu 1 92 -55 4 1421 2443 104 158 19 chr9 109701857 109702280 -14373892 - RLTR45 LTR ERVK 0 482 1 4 1421 7872 140 12 12 chr9 109702280 109703684 -14372488 - RLTR45-int LTR ERVK -456 7761 6331 4 1421 2752 44 0 0 chr9 109703773 109704093 -14372079 - RLTR45-int LTR ERVK -5596 1648 1329 4 1421 798 68 17 17 chr9 109704969 109705088 -14371084 - RLTR45-int LTR ERVK -6213 1031 913 4 1421 1825 70 4 0 chr9 109705211 109705440 -14370732 - RLTR45-int LTR ERVK -6334 910 681 4 1421 4708 49 98 19 chr9 109705785 109706426 -14369746 - RLTR45-int LTR ERVK -6552 692 1 4 1421 2556 123 76 24 chr9 109706426 109706884 -14369288 - RLTR45 LTR ERVK 0 482 1 4 1421 436 33 0 0 chr9 109706884 109706944 -14369228 + B1_Mus2 SINE Alu 88 147 0 4 1422 237 65 0 0 chr9 109707383 109707414 -14368758 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1422 766 187 0 0 chr9 109707420 109707554 -14368618 - B1_Mus2 SINE Alu -9 138 5 4 1422 189 0 0 0 chr9 109707572 109707593 -14368579 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1422 1059 75 0 81 chr9 109707593 109707753 -14368419 - B1_Mm SINE Alu 0 147 1 4 1422 250 249 83 45 chr9 109707912 109708077 -14368095 - RLTR13D3 LTR ERVK 0 1114 849 4 1422 257 143 0 0 chr9 109708322 109708364 -14367808 - B3 SINE B2 -174 42 1 4 1422 24 67 0 0 chr9 109708396 109708441 -14367731 + AT_rich Low_complexity Low_complexity 1 45 0 4 1422 189 0 0 0 chr9 109709279 109709300 -14366872 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1422 736 178 307 0 chr9 109709987 109710150 -14366022 + B3 SINE B2 1 213 -3 4 1422 278 200 18 0 chr9 109710188 109710243 -14365929 + RSINE1 SINE B4 4 59 -106 4 1422 417 170 198 10 chr9 109710286 109710387 -14365785 - PB1D9 SINE Alu 0 120 1 4 1422 1758 117 13 52 chr9 109710997 109711304 -14364868 + RLTR8 LTR ERVK 1 295 -70 4 1422 1095 109 0 0 chr9 109711339 109711486 -14364686 - B1_Mus1 SINE Alu 0 148 2 4 1422 1352 77 27 0 chr9 109711533 109711716 -14364456 - B2_Mm2 SINE B2 -6 189 2 4 1422 1234 89 44 16 chr9 109711770 109711952 -14364220 - B2_Mm1t SINE B2 -5 188 2 4 1422 318 26 0 0 chr9 109712267 109712306 -14363866 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 4 1422 332 232 40 59 chr9 109712350 109712451 -14363721 - RSINE1 SINE B4 -61 104 6 4 1422 346 322 32 16 chr9 109712517 109712640 -14363532 - RSINE1 SINE B4 -37 128 4 4 1422 664 260 27 11 chr9 109712673 109712856 -14363316 - B3 SINE B2 -19 197 12 4 1422 772 186 20 7 chr9 109712856 109713002 -14363170 + B1_Mus1 SINE Alu 1 148 0 4 1422 250 200 20 0 chr9 109713019 109713069 -14363103 + ID_B1 SINE B4 110 160 -64 4 1422 439 255 211 11 chr9 109713121 109713311 -14362861 + B4 SINE B4 2 229 -63 4 1422 715 279 19 37 chr9 109713324 109713540 -14362632 + B3 SINE B2 3 214 -2 4 1422 441 103 0 0 chr9 109713616 109713684 -14362488 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1422 454 215 45 45 chr9 109713908 109714020 -14362152 + PB1D7 SINE Alu 2 113 -7 4 1422 602 255 46 20 chr9 109714023 109714175 -14361997 + B3A SINE B2 1 156 -42 4 1422 234 0 0 0 chr9 109714192 109714218 -14361954 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1422 722 107 0 0 chr9 109714218 109714321 -14361851 - B1_Mur4 SINE Alu -2 148 46 4 1422 189 107 0 0 chr9 109714511 109714539 -14361633 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4 1422 519 222 32 71 chr9 109714539 109714694 -14361478 - B1_Mur1 SINE Alu 0 149 1 4 1422 22 70 0 0 chr9 109715338 109715381 -14360791 + AT_rich Low_complexity Low_complexity 1 43 0 5 1422 1109 95 0 0 chr9 109715670 109715818 -14360354 + B1_Mus1 SINE Alu 1 148 0 5 1422 329 192 41 38 chr9 109716578 109716683 -14359489 + B1F SINE Alu 14 148 -1 5 1422 1698 183 72 0 chr9 109718430 109718775 -14357397 - ORR1C1 LTR MaLR -8 370 1 5 1422 990 148 17 0 chr9 109718795 109718971 -14357201 + RLTR14 LTR ERV1 8 186 -196 5 1422 237 303 76 0 chr9 109719456 109719522 -14356650 - ID4_ SINE ID -10 73 3 5 1422 186 281 206 10 chr9 109719548 109719645 -14356527 - MIR SINE MIR -63 145 30 5 1422 780 196 0 43 chr9 109720279 109720418 -14355754 + B1_Mur3 SINE Alu 2 134 -15 5 1422 719 222 53 72 chr9 109720603 109720812 -14355360 + ID_B1 SINE B4 3 207 -17 5 1422 1384 70 42 11 chr9 109720829 109721018 -14355154 + B2_Mm2 SINE B2 1 195 0 5 1422 558 0 0 0 chr9 109721034 109721096 -14355076 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 5 1422 632 269 82 6 chr9 109721207 109721390 -14354782 - B3 SINE B2 -16 200 4 5 1422 692 229 21 0 chr9 109722223 109722367 -14353805 + B1_Mur2 SINE Alu 3 149 0 5 1422 644 116 134 0 chr9 109722418 109722530 -14353642 + B1_Mus1 SINE Alu 1 127 -21 5 1422 646 251 117 50 chr9 109722619 109722799 -14353373 - B3A SINE B2 -6 192 1 5 1422 547 226 101 20 chr9 109723506 109723655 -14352517 + RSINE1 SINE B4 3 163 -2 5 1422 201 239 0 56 chr9 109723697 109723768 -14352404 + GA-rich Low_complexity Low_complexity 2 68 0 5 1422 846 172 13 27 chr9 109724136 109724285 -14351887 - B1_Mus2 SINE Alu 0 147 1 5 1422 784 263 91 14 chr9 109724419 109724639 -14351533 + B4A SINE B4 1 237 -55 5 1422 318 275 0 24 chr9 109724756 109724838 -14351334 + ID4 SINE ID 2 81 -2 5 1422 492 279 9 0 chr9 109724844 109724955 -14351217 + B1_Mur1 SINE Alu 13 124 -25 5 1422 233 299 11 179 chr9 109724876 109725002 -14351170 + RLTR25A LTR ERVK 521 619 -484 5 1422 321 26 0 0 chr9 109725002 109725040 -14351132 + (TGG)n Simple_repeat Simple_repeat 1 38 0 5 1422 233 299 11 179 chr9 109725040 109725092 -14351080 + RLTR25A LTR ERVK 620 669 -434 5 1422 828 177 0 0 chr9 109725092 109725170 -14351002 + B1_Mus1 SINE Alu 19 148 0 5 1422 1976 114 67 0 chr9 109725403 109725702 -14350470 - ORR1A2 LTR MaLR -8 319 1 5 1422 607 262 155 59 chr9 109725710 109726014 -14350158 - RLTR12B LTR ERVK -195 333 1 5 1422 210 156 0 0 chr9 109726279 109726324 -14349848 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 5 1422 922 90 52 7 chr9 109726340 109726475 -14349697 + B1_Mm SINE Alu 5 145 -2 5 1422 470 275 8 30 chr9 109726492 109726635 -14349537 - B3A SINE B2 -4 212 80 5 1422 289 104 0 0 chr9 109726659 109726707 -14349465 + B3 SINE B2 163 210 -6 5 1422 757 185 13 20 chr9 109726829 109726978 -14349194 + B1_Mus1 SINE Alu 1 148 0 5 1422 1245 126 5 16 chr9 109727112 109727305 -14348867 + B2_Mm2 SINE B2 1 191 -4 5 1422 913 120 0 8 chr9 109727625 109727759 -14348413 - B1_Mur2 SINE Alu 0 149 17 5 1422 364 297 27 0 chr9 109727833 109727931 -14348241 + PB1D10 SINE Alu 17 120 0 5 1422 288 324 85 35 chr9 109727964 109728246 -14347926 + L1M5 LINE L1 5370 5665 -529 5 1422 207 325 64 118 chr9 109728427 109728647 -14347525 - MIRb SINE MIR -57 211 4 5 1422 371 272 71 8 chr9 109729178 109729204 -14346968 - ID_B1 SINE B4 -1 223 192 5 1422 261 0 0 0 chr9 109729204 109729233 -14346939 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 5 1422 371 272 71 8 chr9 109729233 109729332 -14346840 - ID_B1 SINE B4 -33 191 91 5 1422 788 267 35 0 chr9 109729572 109729744 -14346428 - B3 SINE B2 -38 178 1 5 1422 1440 65 21 5 chr9 109729749 109729935 -14346237 - B2_Mm2 SINE B2 -5 190 2 5 1422 434 288 144 23 chr9 109729945 109730119 -14346053 - B3A SINE B2 0 198 4 5 1422 289 283 70 47 chr9 109730259 109730377 -14345795 + B1F SINE Alu 7 125 -24 5 1422 893 246 57 13 chr9 109730505 109730732 -14345440 + Lx8 LINE L1 6469 6705 -768 5 1422 530 272 116 73 chr9 109730731 109731032 -14345140 + Lx9 LINE L1 7125 7438 -206 5 1422 614 168 18 18 chr9 109731045 109731154 -14345018 - B3A SINE B2 -89 109 1 5 1422 591 319 0 24 chr9 109731182 109731346 -14344826 - RSINE1 SINE B4 -3 162 3 5 1422 2659 156 65 180 chr9 109731651 109732330 -14343842 + MT2B LTR ERVL 1 601 0 5 1422 800 189 34 20 chr9 109732492 109732638 -14343534 - B1_Mur1 SINE Alu -1 148 1 5 1422 248 53 26 0 chr9 109732639 109732677 -14343495 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1422 362 290 30 127 chr9 109732677 109732693 -14343479 - B4 SINE B4 -208 84 73 5 1422 1229 52 7 0 chr9 109734214 109734367 -14341805 + B2_Mm1t SINE B2 1 154 -39 5 1422 340 118 14 33 chr9 109734412 109734528 -14341644 + B2_Mm2 SINE B2 47 195 0 5 1422 885 168 62 16 chr9 109734690 109734884 -14341288 + B3 SINE B2 3 205 -11 5 1422 762 214 77 36 chr9 109734896 109735090 -14341082 + B3 SINE B2 5 206 -10 5 1422 206 385 48 9 chr9 109735778 109735883 -14340289 - L2b LINE L2 -4 3371 3263 5 1422 180 318 156 70 chr9 109736167 109736353 -14339819 - L2b LINE L2 -525 2894 2693 5 1422 1250 47 0 0 chr9 109736389 109736537 -14339635 - B1_Mus1 SINE Alu 0 148 1 5 1422 951 103 7 14 chr9 109737074 109737212 -14338960 + B1_Mus2 SINE Alu 9 145 -2 5 1422 1278 121 10 16 chr9 109737216 109737410 -14338762 + B2_Mm1t SINE B2 1 193 0 5 1422 364 286 11 32 chr9 109738041 109738135 -14338037 + RSINE1 SINE B4 34 125 -40 5 1422 312 70 0 0 chr9 109738136 109738179 -14337993 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1422 1219 110 17 0 chr9 109738220 109738393 -14337779 + B2_Mm1t SINE B2 4 179 -14 5 1422 342 183 10 0 chr9 109738440 109738505 -14337667 + B2_Mm2 SINE B2 47 115 -101 5 1422 313 327 17 35 chr9 109738532 109738547 -14337625 + L1M5 LINE L1 3030 3044 -3102 5 1422 1238 47 0 7 chr9 109738547 109738696 -14337476 + B1_Mus1 SINE Alu 1 148 0 5 1422 313 327 17 35 chr9 109738696 109738847 -14337325 + L1M5 LINE L1 3045 3194 -2952 5 1422 627 153 197 24 chr9 109738847 109738974 -14337198 + B1_Mur3 SINE Alu 1 149 0 5 1422 384 246 227 8 chr9 109739100 109739219 -14336953 - B1_Mur3 SINE Alu 0 149 5 5 1422 186 71 0 0 chr9 109739231 109739259 -14336913 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1422 1323 20 0 0 chr9 109739333 109739481 -14336691 + B1_Mus1 SINE Alu 1 148 0 5 1422 919 222 34 5 chr9 109739596 109739800 -14336372 + B3 SINE B2 3 212 -4 5 1422 247 318 22 22 chr9 109739820 109739910 -14336262 - MLT1E1A LTR MaLR -64 590 501 5 1422 983 116 14 7 chr9 109739919 109740066 -14336106 + B1_Mur4 SINE Alu 3 150 0 5 1422 586 257 65 19 chr9 109740353 109740508 -14335664 - RSINE1 SINE B4 -1 164 3 5 1422 253 253 12 12 chr9 109740526 109740606 -14335566 - MLT1E1A LTR MaLR -453 227 148 5 1422 2946 84 5 5 chr9 109740618 109741014 -14335158 + MTA_Mm LTR MaLR 1 396 0 5 1422 206 174 22 0 chr9 109742277 109742323 -14333849 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1422 744 313 51 29 chr9 109742346 109742622 -14333550 - B4 SINE B4 -3 289 8 5 1422 1071 123 0 0 chr9 109742922 109743068 -14333104 - B1_Mur4 SINE Alu 0 150 5 5 1422 242 149 0 78 chr9 109743079 109743171 -14333001 + (TTTG)n Simple_repeat Simple_repeat 3 85 0 5 1422 1186 70 0 0 chr9 109743171 109743314 -14332858 - B1_Mus1 SINE Alu -5 143 1 5 1422 242 149 0 78 chr9 109743314 109743337 -14332835 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 5 1422 635 185 160 0 chr9 109743337 109743456 -14332716 - B1_Mur4 SINE Alu 0 150 13 5 1422 491 152 13 0 chr9 109743527 109743606 -14332566 + B1_Mur1 SINE Alu 51 130 -19 5 1422 271 211 29 115 chr9 109743609 109743690 -14332482 + RMER17A LTR ERVK 343 426 -325 5 1422 255 31 0 0 chr9 109743690 109743722 -14332450 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1422 271 211 29 115 chr9 109743722 109743779 -14332393 + RMER17A LTR ERVK 427 469 -282 5 1422 241 361 66 16 chr9 109743780 109743901 -14332271 - MIRb SINE MIR -125 143 17 5 1422 618 270 0 0 chr9 109745753 109745931 -14330241 + CT-rich Low_complexity Low_complexity 2 179 0 5 1422 697 172 0 77 chr9 109745884 109746231 -14329941 + (TCTCTG)n Simple_repeat Simple_repeat 1 320 0 5 1422 363 256 0 0 chr9 109746235 109746411 -14329761 + CT-rich Low_complexity Low_complexity 2 177 0 5 1422 220 284 83 36 chr9 109746773 109746857 -14329315 + B4A SINE B4 80 167 -125 5 1422 417 237 58 58 chr9 109746785 109746888 -14329284 + B1_Mur3 SINE Alu 5 107 -42 5 1422 464 238 19 19 chr9 109747117 109747224 -14328948 + MLT1C LTR MaLR 6 112 -355 5 1422 34 0 0 0 chr9 109747258 109747292 -14328880 + AT_rich Low_complexity Low_complexity 1 34 0 5 1422 1450 73 11 0 chr9 109747882 109748073 -14328099 - B2_Mm1t SINE B2 0 193 1 5 1422 295 197 24 165 chr9 109748399 109748484 -14327688 + RSINE1 SINE B4 93 165 0 5 1422 770 158 190 0 chr9 109748534 109748692 -14327480 + B3 SINE B2 3 190 -26 5 1422 567 0 0 0 chr9 109748692 109748755 -14327417 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 5 1422 364 295 42 0 chr9 109748784 109748879 -14327293 + ID_B1 SINE B4 78 176 -48 5 1422 479 211 65 28 chr9 109748795 109748902 -14327270 + PB1D9 SINE Alu 8 118 -2 5 1422 180 0 0 0 chr9 109748968 109748988 -14327184 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1422 587 130 235 0 chr9 109748997 109749112 -14327060 - B1_Mur4 SINE Alu 0 150 9 5 1422 794 188 32 81 chr9 109749190 109749375 -14326797 + B3A SINE B2 1 176 -22 5 1422 497 289 41 108 chr9 109749386 109749408 -14326764 - ID_B1 SINE B4 -46 246 181 6 1422 865 176 0 0 chr9 109749408 109749544 -14326628 - B1_Mus1 SINE Alu -1 147 12 6 1422 497 289 41 108 chr9 109749544 109749580 -14326592 - ID_B1 SINE B4 -46 180 64 6 1422 833 200 0 0 chr9 109749585 109749725 -14326447 - B1_Mus1 SINE Alu -8 140 1 6 1422 225 94 0 0 chr9 109750307 109750339 -14325833 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1422 1228 48 0 0 chr9 109750339 109750486 -14325686 - B1_Mus2 SINE Alu 0 147 1 6 1422 448 175 100 0 chr9 109750636 109750716 -14325456 - B1F2 SINE Alu -26 123 36 6 1422 183 80 0 0 chr9 109752364 109752389 -14323783 + (CACCC)n Simple_repeat Simple_repeat 2 26 0 6 1422 217 250 0 20 chr9 109753040 109753089 -14323083 + B3A SINE B2 82 129 -69 6 1422 376 318 0 0 chr9 109753129 109753236 -14322936 + PB1D7 SINE Alu 4 110 -10 6 1422 767 263 33 14 chr9 109753258 109753470 -14322702 + ID_B1 SINE B4 1 216 -8 6 1422 201 121 0 0 chr9 109753471 109753504 -14322668 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 6 1422 470 251 97 12 chr9 109753527 109753692 -14322480 - B3A SINE B2 -18 180 2 6 1422 245 185 0 0 chr9 109754042 109754096 -14322076 + T-rich Low_complexity Low_complexity 1 54 0 6 1422 1152 49 0 7 chr9 109754099 109754244 -14321928 - B1_Mus2 SINE Alu -2 145 2 6 1422 307 169 62 0 chr9 109754504 109754570 -14321602 - B1F SINE Alu 0 149 47 6 1422 285 29 0 0 chr9 109754650 109754684 -14321488 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1422 602 188 62 0 chr9 109754730 109754842 -14321330 - B3A SINE B2 -79 119 1 6 1422 1426 66 0 11 chr9 109754961 109755144 -14321028 + B2_Mm2 SINE B2 1 181 -14 6 1422 822 243 137 63 chr9 109755309 109755418 -14320754 + MTD LTR MaLR 99 210 -209 6 1422 1625 27 21 0 chr9 109755418 109755606 -14320566 + B2_Mm1a SINE B2 2 193 0 6 1422 822 243 137 63 chr9 109755606 109755795 -14320377 + MTD LTR MaLR 211 419 0 6 1422 184 87 20 61 chr9 109755813 109755862 -14320310 + T-rich Low_complexity Low_complexity 1 47 0 6 1422 1163 69 7 0 chr9 109755890 109756035 -14320137 + B1_Mus1 SINE Alu 3 148 0 6 1422 21 36 0 0 chr9 109756043 109756071 -14320101 + AT_rich Low_complexity Low_complexity 1 28 0 6 1422 268 319 11 0 chr9 109756132 109756223 -14319949 - B3 SINE B2 -124 92 1 6 1422 189 0 0 0 chr9 109756237 109756258 -14319914 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 6 1422 610 273 10 93 chr9 109756268 109756462 -14319710 + B3 SINE B2 26 203 -13 6 1422 612 288 19 38 chr9 109756462 109756621 -14319551 + RSINE1 SINE B4 9 164 -1 6 1422 269 229 156 125 chr9 109757236 109757396 -14318776 - MTEa LTR MaLR -11 368 204 6 1422 317 179 18 18 chr9 109757447 109757504 -14318668 - HAL1-3A_ME LINE L1 -826 2032 1976 6 1422 553 305 52 7 chr9 109757521 109757676 -14318496 - RSINE1 SINE B4 0 165 4 6 1422 293 175 78 16 chr9 109757701 109757765 -14318407 - MTEa LTR MaLR -252 127 60 6 1422 1201 138 11 0 chr9 109757787 109757975 -14318197 - B2_Mm1t SINE B2 -1 192 3 6 1422 1688 31 0 0 chr9 109758005 109758197 -14317975 + B2_Mm1a SINE B2 2 193 0 6 1422 426 47 2 26 chr9 109758338 109758408 -14317764 + B2_Mm2 SINE B2 105 171 -22 6 1422 510 17 0 0 chr9 109758408 109758467 -14317705 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1422 516 200 14 58 chr9 109758764 109758902 -14317270 - ID_B1 SINE B4 -12 212 81 6 1422 425 49 16 16 chr9 109758978 109759040 -14317132 + B2_Mm1t SINE B2 118 179 -14 6 1422 345 105 308 34 chr9 109759072 109759189 -14316983 + B2_Mm2 SINE B2 47 195 0 6 1422 1246 48 0 0 chr9 109759402 109759549 -14316623 - B1_Mm SINE Alu 0 147 1 6 1422 716 86 9 0 chr9 109759921 109760026 -14316146 + (GAAA)n Simple_repeat Simple_repeat 1 106 0 6 1422 1617 52 0 0 chr9 109760026 109760218 -14315954 + B2_Mm1a SINE B2 2 193 0 6 1422 198 0 0 0 chr9 109760218 109760240 -14315932 + (GAAA)n Simple_repeat Simple_repeat 4 25 0 6 1422 620 229 8 0 chr9 109760240 109760362 -14315810 + ID_B1 SINE B4 92 214 -10 6 1422 312 91 0 0 chr9 109760362 109760406 -14315766 + (ATG)n Simple_repeat Simple_repeat 2 45 0 6 1422 3739 112 53 40 chr9 109760561 109761258 -14314914 - RMER17A LTR ERVK 0 751 46 6 1422 321 26 0 0 chr9 109761294 109761332 -14314840 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1422 868 129 43 7 chr9 109761414 109761555 -14314617 + B1_Mur4 SINE Alu 5 150 0 6 1422 248 26 77 0 chr9 109761560 109761599 -14314573 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 6 1422 811 152 28 21 chr9 109761619 109761760 -14314412 + B1_Mur2 SINE Alu 2 143 -6 6 1422 558 133 0 0 chr9 109761760 109761850 -14314322 + (GGA)n Simple_repeat Simple_repeat 1 90 0 6 1422 256 322 11 22 chr9 109761870 109761959 -14314213 + ID_B1 SINE B4 6 93 -131 6 1422 360 0 0 0 chr9 109762534 109762574 -14313598 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1422 378 0 0 0 chr9 109762574 109762615 -14313557 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1422 249 227 14 50 chr9 109762615 109762645 -14313527 + ORR1B1-int LTR MaLR 621 645 -864 6 1422 727 189 8 0 chr9 109762645 109762772 -14313400 + B1_Mur4 SINE Alu 2 129 -21 6 1422 765 187 29 7 chr9 109762788 109762928 -14313244 + B1_Mur2 SINE Alu 1 143 -6 6 1422 279 0 0 0 chr9 109762963 109762994 -14313178 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1422 248 240 0 0 chr9 109763246 109763296 -14312876 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1422 883 181 22 5 chr9 109763685 109763865 -14312307 + B3 SINE B2 1 191 -4 6 1422 342 264 45 11 chr9 109764257 109764345 -14311827 + PB1D7 SINE Alu 17 107 -13 6 1422 292 250 29 0 chr9 109764357 109764425 -14311747 + GA-rich Low_complexity Low_complexity 5 74 0 6 1422 837 53 175 0 chr9 109764459 109764573 -14311599 + B1_Mus2 SINE Alu 3 136 -11 6 1422 490 312 48 55 chr9 109765530 109765801 -14310371 - L2 LINE L2 -1269 2150 1882 6 1422 658 109 0 10 chr9 109765914 109766016 -14310156 - B1_Mus2 SINE Alu -1 146 46 6 1422 1219 176 5 0 chr9 109766269 109766473 -14309699 + B3 SINE B2 1 205 -11 6 1422 1542 67 0 5 chr9 109766496 109766691 -14309481 + B2_Mm2 SINE B2 2 195 0 6 1422 462 250 26 69 chr9 109766706 109766822 -14309350 + B1_Mur1 SINE Alu 34 144 -5 6 1422 412 274 217 0 chr9 109766845 109767020 -14309152 + ID_B1 SINE B4 2 214 -10 6 1422 216 0 0 0 chr9 109767020 109767044 -14309128 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 1422 261 273 68 0 chr9 109767053 109767267 -14308905 + (ATAGG)n Simple_repeat Simple_repeat 1 228 0 6 1422 481 329 25 31 chr9 109767268 109767431 -14308741 + RSINE1 SINE B4 2 163 -2 6 1422 544 294 8 8 chr9 109767532 109767659 -14308513 + RSINE1 SINE B4 35 161 -4 6 1422 637 223 21 41 chr9 109767681 109767826 -14308346 + B1_Mur3 SINE Alu 3 144 -5 6 1422 1683 31 0 0 chr9 109767835 109768027 -14308145 + B2_Mm1a SINE B2 1 192 -1 6 1422 211 355 0 13 chr9 109768033 109768110 -14308062 + B4A SINE B4 82 157 -135 6 1422 330 196 0 0 chr9 109768056 109768112 -14308060 + B1_Mur4 SINE Alu 21 76 -74 6 1422 227 182 200 0 chr9 109768182 109768237 -14307935 - PB1D10 SINE Alu -27 90 25 6 1422 386 267 0 65 chr9 109768433 109768557 -14307615 + ID_B1 SINE B4 100 215 -9 6 1422 560 236 73 0 chr9 109769266 109769389 -14306783 + B1_Mur1 SINE Alu 5 136 -13 6 1422 573 64 0 0 chr9 109769397 109769475 -14306697 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 1422 727 275 12 23 chr9 109769570 109769741 -14306431 - B3 SINE B2 -45 171 3 6 1422 343 267 78 0 chr9 109769757 109769868 -14306304 + B1F SINE Alu 1 124 -25 6 1422 254 269 25 25 chr9 109769902 109769982 -14306190 + ID4 SINE ID 4 83 0 6 1422 204 125 0 0 chr9 109770004 109770036 -14306136 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 6 1422 479 161 11 44 chr9 109770104 109770195 -14305977 + B2_Mm2 SINE B2 1 88 -107 6 1422 378 271 117 68 chr9 109770336 109770542 -14305630 + B3 SINE B2 1 216 0 6 1422 552 222 0 33 chr9 109770543 109770664 -14305508 + PB1D9 SINE Alu 3 119 -1 6 1422 185 65 32 0 chr9 109770707 109770738 -14305434 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 6 1422 896 123 0 7 chr9 109771067 109771214 -14304958 + (TTC)n Simple_repeat Simple_repeat 2 147 0 6 1422 291 28 0 0 chr9 109771222 109771258 -14304914 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6 1422 318 146 0 35 chr9 109771283 109771340 -14304832 - B2_Mm2 SINE B2 -94 101 47 6 1422 1337 80 34 0 chr9 109771369 109771545 -14304627 - B2_Mm1t SINE B2 -11 182 1 6 1422 273 163 0 0 chr9 109771550 109771599 -14304573 + T-rich Low_complexity Low_complexity 1 49 0 6 1422 1053 78 50 0 chr9 109771623 109771764 -14304408 - B1_Mus1 SINE Alu 0 148 1 6 1422 283 346 50 0 chr9 109772202 109772303 -14303869 - PB1D9 SINE Alu -1 119 14 6 1422 719 246 75 5 chr9 109772331 109772519 -14303653 - B3 SINE B2 -11 205 5 6 1422 636 271 20 36 chr9 109772526 109772721 -14303451 - ID_B1 SINE B4 -1 223 32 6 1422 952 132 0 40 chr9 109772747 109772897 -14303275 - B1_Mur1 SINE Alu 0 149 6 6 1422 209 33 33 0 chr9 109772903 109772933 -14303239 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1422 237 178 0 0 chr9 109772998 109773043 -14303129 + CT-rich Low_complexity Low_complexity 2 46 0 6 1422 858 168 7 14 chr9 109773045 109773190 -14302982 - B1_Mur2 SINE Alu 0 149 6 6 1422 420 301 91 61 chr9 109773080 109773278 -14302894 - B4 SINE B4 -88 204 1 7 1422 644 279 107 47 chr9 109773733 109773950 -14302222 + RMER5 LTR ERV1 40 270 -264 7 1422 294 219 13 64 chr9 109773950 109774028 -14302144 + B2_Mm2 SINE B2 1 74 -121 7 1422 662 133 90 38 chr9 109774030 109774163 -14302009 - B1_Mur2 SINE Alu 0 149 10 7 1422 524 197 114 30 chr9 109774208 109774339 -14301833 - B1_Mm SINE Alu -1 146 5 7 1422 619 205 204 6 chr9 109774341 109774513 -14301659 + RMER5 LTR ERV1 329 534 0 7 1422 21 0 0 0 chr9 109774581 109774602 -14301570 + AT_rich Low_complexity Low_complexity 1 21 0 7 1422 491 281 0 16 chr9 109774613 109774736 -14301436 + B1F SINE Alu 2 122 -27 7 1422 197 282 88 64 chr9 109774760 109774885 -14301287 - MER5A DNA MER1_type 0 189 62 7 1422 374 312 0 121 chr9 109774886 109775010 -14301162 - PB1D10 SINE Alu -8 109 1 7 1422 624 231 52 0 chr9 109775038 109775172 -14301000 + B1_Mur2 SINE Alu 9 149 0 7 1422 339 304 131 15 chr9 109775401 109775538 -14300634 + ID_B1 SINE B4 66 218 -6 7 1422 713 290 21 0 chr9 109775552 109775738 -14300434 + B3A SINE B2 9 198 0 7 1422 1051 94 0 0 chr9 109775951 109776089 -14300083 + B1_Mus1 SINE Alu 5 142 -6 7 1422 450 136 0 0 chr9 109776195 109776255 -14299917 + (T)n Simple_repeat Simple_repeat 1 60 0 7 1422 1253 34 0 0 chr9 109776255 109776402 -14299770 - B1_Mm SINE Alu 0 147 1 7 1422 450 136 0 0 chr9 109776402 109776429 -14299743 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1422 448 292 77 0 chr9 109776437 109776567 -14299605 - ID_B1 SINE B4 -3 221 82 7 1422 211 264 74 19 chr9 109776619 109776673 -14299499 + ID2 SINE ID 8 64 -19 7 1422 435 187 77 0 chr9 109776673 109776764 -14299408 + ID_B1 SINE B4 125 222 -2 7 1422 831 173 90 24 chr9 109777003 109777169 -14299003 + ORR1D1 LTR MaLR 5 181 -193 7 1422 519 148 0 0 chr9 109777169 109777257 -14298915 + (TC)n Simple_repeat Simple_repeat 1 88 0 7 1422 23 0 0 0 chr9 109777363 109777386 -14298786 + AT_rich Low_complexity Low_complexity 1 23 0 7 1422 890 146 0 27 chr9 109777398 109777546 -14298626 + B1_Mus2 SINE Alu 4 147 0 7 1422 333 0 0 0 chr9 109777677 109777714 -14298458 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1422 801 243 41 0 chr9 109779747 109779916 -14296256 - B3A SINE B2 -12 186 11 7 1422 372 163 276 11 chr9 109779941 109780028 -14296144 - PB1D9 SINE Alu -1 119 10 7 1422 216 0 0 0 chr9 109780140 109780164 -14296008 + (GTGTG)n Simple_repeat Simple_repeat 1 24 0 7 1422 684 226 88 44 chr9 109780263 109780467 -14295705 - B3 SINE B2 0 216 4 7 1422 221 240 0 57 chr9 109780469 109780522 -14295650 - B1F SINE Alu -3 146 97 7 1422 506 233 97 0 chr9 109780870 109780973 -14295199 + PB1 SINE Alu 7 119 -8 7 1422 1069 78 13 25 chr9 109780953 109781110 -14295062 + B2_Mm1a SINE B2 6 160 -33 7 1422 276 53 0 0 chr9 109781110 109781148 -14295024 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 7 1422 220 288 29 57 chr9 109781153 109781223 -14294949 + ID4_ SINE ID 15 82 -1 7 1422 251 233 279 0 chr9 109781244 109781330 -14294842 - PB1D9 SINE Alu -8 112 3 7 1422 570 261 0 0 chr9 109782153 109782272 -14293900 + PB1D7 SINE Alu 2 120 0 7 1422 206 320 49 37 chr9 109782539 109782620 -14293552 + MIRb SINE MIR 20 101 -167 7 1422 859 220 19 0 chr9 109783373 109783532 -14292640 - B3 SINE B2 -11 205 44 7 1422 595 164 98 30 chr9 109783542 109783674 -14292498 + B1_Mus1 SINE Alu 8 148 0 7 1422 371 278 60 40 chr9 109783775 109783925 -14292247 - RSINE1 SINE B4 -10 155 3 7 1422 429 124 10 20 chr9 109784117 109784216 -14291956 + (TG)n Simple_repeat Simple_repeat 2 99 0 7 1422 519 246 53 23 chr9 109784216 109784349 -14291823 + ID_B1 SINE B4 88 224 0 7 1422 316 314 185 8 chr9 109784701 109784820 -14291352 - ID_B1 SINE B4 -3 221 82 7 1422 637 296 26 5 chr9 109785128 109785318 -14290854 - B3A SINE B2 -4 194 1 7 1422 256 339 0 0 chr9 109785353 109785415 -14290757 + PB1D7 SINE Alu 2 63 -57 7 1422 1212 68 0 0 chr9 109785596 109785744 -14290428 - B1_Mus1 SINE Alu 0 148 1 7 1422 233 119 0 23 chr9 109785892 109785935 -14290237 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 7 1422 628 152 175 8 chr9 109787120 109787246 -14288926 - B1_Mus1 SINE Alu 0 148 2 7 1422 368 149 231 44 chr9 109787318 109787409 -14288763 - PB1D10 SINE Alu 0 117 10 7 1422 293 280 11 54 chr9 109787500 109787609 -14288563 - L1M5 LINE L1 -787 5657 5553 7 1422 339 235 110 68 chr9 109787679 109787825 -14288347 - ORR1D2 LTR MaLR 0 370 219 7 1422 600 165 18 9 chr9 109787855 109787965 -14288207 + B1_Mus1 SINE Alu 37 147 -1 7 1422 302 237 94 26 chr9 109787985 109788102 -14288070 - ORR1D2 LTR MaLR -245 125 1 7 1422 407 224 255 0 chr9 109788156 109788317 -14287855 - B3 SINE B2 -13 203 2 7 1422 230 171 0 47 chr9 109788376 109788419 -14287753 - ID2 SINE ID -4 79 39 7 1422 180 0 0 0 chr9 109788589 109788609 -14287563 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1422 333 185 203 32 chr9 109788845 109788968 -14287204 - RSINE1 SINE B4 -17 148 5 7 1422 289 292 0 0 chr9 109789313 109789385 -14286787 - PB1D7 SINE Alu -1 119 48 7 1422 322 182 0 18 chr9 109789495 109789551 -14286621 + B1_Mur1 SINE Alu 61 115 -34 7 1422 587 222 88 15 chr9 109790124 109790261 -14285911 + B1_Mm SINE Alu 1 147 0 7 1422 225 291 159 26 chr9 109790503 109790616 -14285556 - ID_B1 SINE B4 -4 220 93 7 1422 555 206 40 60 chr9 109790641 109790791 -14285381 - B1_Mus1 SINE Alu -1 147 1 7 1422 346 160 178 65 chr9 109790870 109790977 -14285195 + PB1D9 SINE Alu 2 120 0 7 1422 183 303 84 63 chr9 109791829 109791924 -14284248 + MER5A DNA MER1_type 38 134 -55 7 1422 439 184 22 44 chr9 109792575 109792666 -14283506 - B1_Mus2 SINE Alu 0 147 59 7 1422 477 270 22 14 chr9 109792874 109793013 -14283159 - B1_Mur4 SINE Alu -9 141 2 7 1422 368 283 86 14 chr9 109793286 109793426 -14282746 + ID_B1 SINE B4 26 175 -49 7 1422 403 220 66 0 chr9 109793341 109793432 -14282740 + PB1D10 SINE Alu 6 102 -15 7 1422 391 262 162 19 chr9 109793456 109793523 -14282649 + ID SINE ID 3 84 -140 7 1422 331 303 54 18 chr9 109793523 109793634 -14282538 + PB1D9 SINE Alu 4 118 -2 7 1422 25 0 0 0 chr9 109795260 109795285 -14280887 + AT_rich Low_complexity Low_complexity 1 25 0 7 1422 229 343 125 62 chr9 109796669 109796781 -14279391 + RSINE1 SINE B4 38 156 -9 7 1422 534 244 56 16 chr9 109797647 109797772 -14278400 - B3 SINE B2 -86 130 1 7 1422 1239 48 0 0 chr9 109797901 109798048 -14278124 - B1_Mus2 SINE Alu 0 147 1 7 1422 738 0 0 0 chr9 109798688 109798770 -14277402 + (TG)n Simple_repeat Simple_repeat 2 83 0 7 1422 657 218 53 0 chr9 109798770 109798903 -14277269 - B1_Mur1 SINE Alu -9 140 1 7 1422 306 0 0 0 chr9 109798908 109798942 -14277230 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1422 277 263 48 88 chr9 109800177 109800302 -14275870 - PB1D9 SINE Alu 0 120 1 7 1422 561 279 40 13 chr9 109800302 109800381 -14275791 - ID SINE ID -140 84 2 7 1422 494 279 0 59 chr9 109800389 109800507 -14275665 - PB1D10 SINE Alu -1 116 6 7 1422 348 324 0 0 chr9 109800778 109800886 -14275286 + PB1D7 SINE Alu 1 108 -12 7 1422 697 261 71 33 chr9 109800901 109801111 -14275061 + ID_B1 SINE B4 3 220 -4 7 1422 276 30 0 0 chr9 109801152 109801185 -14274987 + (TTG)n Simple_repeat Simple_repeat 1 33 0 7 1422 215 163 0 157 chr9 109801203 109801218 -14274954 + B4A SINE B4 81 123 -169 7 1422 267 139 0 0 chr9 109801218 109801254 -14274918 + B1_Mus1 SINE Alu 4 39 -109 7 1422 649 194 170 39 chr9 109801288 109801470 -14274702 - B3 SINE B2 -8 208 3 7 1422 243 0 0 0 chr9 109801490 109801517 -14274655 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1422 324 94 0 0 chr9 109801888 109801941 -14274231 + (G)n Simple_repeat Simple_repeat 1 53 0 7 1422 425 261 83 90 chr9 109802029 109802185 -14273987 - B4A SINE B4 -135 157 3 7 1422 304 312 162 17 chr9 109802393 109802628 -14273544 + L2b LINE L2 2918 3186 -189 7 1422 421 254 53 24 chr9 109802710 109802833 -14273339 - PB1D10 SINE Alu -25 124 8 7 1422 203 204 0 20 chr9 109802844 109802894 -14273278 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 7 1422 283 351 30 0 chr9 109802924 109803055 -14273117 - B1_Mus1 SINE Alu -3 145 11 7 1422 516 291 8 0 chr9 109802939 109803066 -14273106 - ID_B1 SINE B4 -17 207 80 7 1422 811 190 0 34 chr9 109803449 109803596 -14272576 + B1_Mur3 SINE Alu 5 146 -3 7 1422 342 0 0 0 chr9 109803597 109803635 -14272537 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 7 1422 872 239 19 28 chr9 109803644 109803855 -14272317 + B3 SINE B2 3 211 -5 7 1422 538 196 29 0 chr9 109803856 109803958 -14272214 - B1_Mur4 SINE Alu -45 105 1 7 1422 186 71 0 0 chr9 109803995 109804023 -14272149 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1422 750 209 0 51 chr9 109804065 109804221 -14271951 - B1_Mur3 SINE Alu 0 149 2 7 1422 21 71 0 0 chr9 109804221 109804263 -14271909 + AT_rich Low_complexity Low_complexity 1 42 0 7 1422 1438 38 54 21 chr9 109804263 109804449 -14271723 + B2_Mm2 SINE B2 2 193 -2 7 1422 1205 48 0 0 chr9 109804449 109804594 -14271578 + B1_Mus1 SINE Alu 1 146 -2 8 1422 204 40 0 0 chr9 109804594 109804619 -14271553 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 8 1422 189 74 0 0 chr9 109804620 109804647 -14271525 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 8 1422 412 189 286 9 chr9 109804652 109804764 -14271408 - RSINE1 SINE B4 -19 146 4 8 1422 438 283 39 115 chr9 109805636 109805792 -14270380 + ID_B1 SINE B4 79 222 -2 8 1422 268 250 20 67 chr9 109805840 109805857 -14270315 + ORR1B1-int LTR MaLR 612 625 -884 8 1422 1391 76 11 11 chr9 109805857 109806044 -14270128 + B2_Mm1t SINE B2 1 187 -6 8 1422 268 250 20 67 chr9 109806044 109806176 -14269996 + ORR1B1-int LTR MaLR 626 754 -755 8 1422 998 73 0 7 chr9 109806073 109806210 -14269962 + B1_Mus1 SINE Alu 6 141 -7 8 1422 884 225 48 11 chr9 109806333 109806522 -14269650 + B3A SINE B2 2 197 -1 8 1422 29 60 0 0 chr9 109806528 109806578 -14269594 + AT_rich Low_complexity Low_complexity 1 50 0 8 1422 321 360 88 34 chr9 109806613 109806712 -14269460 + ID_B1 SINE B4 3 217 -7 8 1422 421 204 162 19 chr9 109806712 109806817 -14269355 + B1_Mus2 SINE Alu 21 140 -7 8 1422 605 248 50 0 chr9 109806843 109806984 -14269188 + B1_Mur2 SINE Alu 2 149 0 8 1422 349 238 78 33 chr9 109807320 109807343 -14268829 + ID_B1 SINE B4 63 152 -72 8 1422 366 239 0 0 chr9 109807343 109807410 -14268762 + PB1D10 SINE Alu 5 71 -46 8 1422 279 0 0 0 chr9 109807443 109807474 -14268698 + (TATG)n Simple_repeat Simple_repeat 2 32 0 8 1422 643 228 29 0 chr9 109807503 109807639 -14268533 + B1_Mur2 SINE Alu 1 140 -9 8 1422 295 250 0 77 chr9 109808116 109808128 -14268044 - PB1D10 SINE Alu -21 96 25 8 1422 374 212 0 0 chr9 109808128 109808194 -14267978 - ID_B1 SINE B4 -53 171 106 8 1422 698 248 0 7 chr9 109808268 109808410 -14267762 - ID_B1 SINE B4 -2 222 82 8 1422 273 294 48 84 chr9 109808271 109808438 -14267734 + YREP_Mm Unknown Unknown 181 341 -1471 8 1422 507 276 68 0 chr9 109808439 109808602 -14267570 + L1ME1 LINE L1 5724 5897 -282 8 1422 221 0 35 0 chr9 109808621 109808650 -14267522 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1422 241 146 0 77 chr9 109808650 109808692 -14267480 - B1_Mur4 SINE Alu -15 135 97 8 1422 424 245 84 9 chr9 109808682 109808789 -14267383 + B3 SINE B2 96 210 -6 8 1422 721 196 29 0 chr9 109808930 109809068 -14267104 + B1_Mus1 SINE Alu 1 142 -6 8 1422 351 0 0 0 chr9 109809068 109809107 -14267065 + (CTAA)n Simple_repeat Simple_repeat 3 41 0 8 1422 220 227 227 0 chr9 109809117 109809183 -14266989 + MER5A DNA MER1_type 1 81 -108 8 1422 638 221 18 129 chr9 109809183 109809354 -14266818 + B3A SINE B2 3 154 -41 8 1422 423 37 19 0 chr9 109809324 109809378 -14266794 - B2_Mm2 SINE B2 -139 56 2 8 1422 408 311 0 62 chr9 109809378 109809504 -14266668 + ID_B1 SINE B4 106 223 -1 8 1422 353 246 75 26 chr9 109809538 109809634 -14266538 + B1F SINE Alu 9 111 -37 8 1422 180 0 0 0 chr9 109810370 109810390 -14265782 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 1422 297 0 0 0 chr9 109810458 109810491 -14265681 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1422 216 344 0 15 chr9 109810493 109810558 -14265614 - RSINE1 SINE B4 -8 157 94 8 1422 834 173 22 0 chr9 109810914 109811053 -14265119 + B3A SINE B2 2 143 -55 8 1422 429 66 0 0 chr9 109811059 109811120 -14265052 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1422 1433 76 5 0 chr9 109811152 109811337 -14264835 - B2_Mm1a SINE B2 -6 187 2 8 1422 387 225 38 0 chr9 109811404 109811484 -14264688 - RSINE1 SINE B4 -72 93 11 8 1422 402 275 72 24 chr9 109811617 109811850 -14264322 - MIRc SINE MIR -7 261 17 8 1422 265 228 0 42 chr9 109811962 109812058 -14264114 + CT-rich Low_complexity Low_complexity 2 93 0 8 1422 384 204 48 48 chr9 109812067 109812170 -14264002 - ID_B1 SINE B4 -1 223 121 8 1422 844 152 0 14 chr9 109812361 109812494 -14263678 + B1_Mur4 SINE Alu 11 141 -9 8 1422 183 42 0 0 chr9 109812494 109812518 -14263654 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 8 1422 858 192 35 23 chr9 109812686 109812857 -14263315 + B2_Mm2 SINE B2 1 173 -22 8 1422 572 272 43 19 chr9 109813055 109813216 -14262956 - B3 SINE B2 -5 211 47 8 1422 267 31 0 0 chr9 109813234 109813266 -14262906 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 8 1422 290 263 0 0 chr9 109813295 109813352 -14262820 - B1_Mur1 SINE Alu -12 137 81 8 1422 279 79 0 0 chr9 109813352 109813390 -14262782 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 1422 1175 75 0 0 chr9 109813394 109813540 -14262632 - B1_Mus1 SINE Alu 0 148 3 8 1422 355 286 15 105 chr9 109813548 109813668 -14262504 - B3A SINE B2 -2 214 105 8 1422 3014 60 47 0 chr9 109813668 109814050 -14262122 - MTB LTR MaLR 0 400 1 8 1422 355 328 0 136 chr9 109814050 109814116 -14262056 - B3A SINE B2 -92 106 49 8 1422 448 255 0 0 chr9 109814126 109814224 -14261948 - RSINE1 SINE B4 -63 102 5 8 1422 298 243 181 43 chr9 109814681 109814797 -14261375 + Lx8 LINE L1 7206 7337 -136 8 1422 273 75 0 0 chr9 109814800 109814840 -14261332 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 1422 566 244 53 59 chr9 109814979 109815021 -14261151 + ID_B1 SINE B4 56 223 0 8 1422 970 39 87 0 chr9 109815021 109815148 -14261024 + B1_Mus1 SINE Alu 11 148 0 8 1422 305 229 16 0 chr9 109815181 109815242 -14260930 + PB1D9 SINE Alu 7 68 -52 8 1422 445 119 30 0 chr9 109815254 109815321 -14260851 - B1_Mus2 SINE Alu -58 89 21 8 1422 577 201 57 14 chr9 109815808 109815949 -14260223 - B1_Mm SINE Alu 0 147 1 8 1422 276 30 0 0 chr9 109815951 109815984 -14260188 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 8 1422 221 0 0 105 chr9 109815984 109816003 -14260169 + (A)n Simple_repeat Simple_repeat 1 16 0 8 1422 1098 70 28 0 chr9 109816003 109816146 -14260026 + B1_Mus1 SINE Alu 2 148 0 8 1422 221 0 0 105 chr9 109816146 109816164 -14260008 + (A)n Simple_repeat Simple_repeat 1 18 0 8 1422 1074 214 16 0 chr9 109816173 109816365 -14259807 - ID_B1 SINE B4 -28 196 2 8 1422 277 319 9 113 chr9 109816465 109816571 -14259601 + B1F2 SINE Alu 1 95 -54 8 1422 204 286 0 45 chr9 109816575 109816641 -14259531 + GA-rich Low_complexity Low_complexity 2 64 0 8 1422 579 310 216 35 chr9 109816833 109817180 -14258992 - MLT1F1 LTR MaLR -151 418 9 8 1422 864 145 216 6 chr9 109817180 109817347 -14258825 - B3 SINE B2 -14 202 1 8 1422 480 194 57 19 chr9 109817527 109817632 -14258540 + PB1D10 SINE Alu 7 115 -2 8 1422 824 242 24 15 chr9 109817645 109817825 -14258347 + B3A SINE B2 2 173 -20 8 1422 256 24 24 24 chr9 109817899 109817941 -14258231 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 8 1422 450 0 0 0 chr9 109818138 109818188 -14257984 + (GAAA)n Simple_repeat Simple_repeat 1 50 0 8 1422 696 183 92 0 chr9 109818204 109818335 -14257837 + B1_Mus1 SINE Alu 6 148 0 8 1422 1229 47 0 0 chr9 109818363 109818511 -14257661 + B1_Mus1 SINE Alu 1 148 0 8 1422 231 36 0 0 chr9 109818511 109818539 -14257633 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1422 314 283 149 13 chr9 109818567 109818735 -14257437 + MIRb SINE MIR 21 207 -61 8 1422 368 259 0 80 chr9 109818910 109818998 -14257174 + RSINE1 SINE B4 2 82 -83 8 1422 1680 31 0 0 chr9 109819045 109819237 -14256935 + B2_Mm1a SINE B2 2 193 0 8 1422 357 288 26 43 chr9 109819344 109819460 -14256712 - PB1D7 SINE Alu -6 114 1 8 1422 337 304 65 56 chr9 109819634 109819742 -14256430 + PB1D10 SINE Alu 1 109 -8 8 1422 413 284 35 35 chr9 109819757 109819870 -14256302 + ID_B1 SINE B4 5 117 -107 8 1422 598 224 31 23 chr9 109819873 109820001 -14256171 + B3 SINE B2 78 206 -10 8 1422 872 189 7 7 chr9 109820018 109820167 -14256005 - B1_Mur2 SINE Alu 0 149 1 8 1422 1024 124 130 31 chr9 109820179 109820371 -14255801 - B3 SINE B2 -5 211 1 8 1422 285 89 0 0 chr9 109820374 109820419 -14255753 + (T)n Simple_repeat Simple_repeat 1 45 0 8 1422 413 244 50 16 chr9 109820767 109820888 -14255284 + PB1 SINE Alu 1 125 -2 8 1422 1272 68 0 91 chr9 109820902 109821112 -14255060 + B2_Mm2 SINE B2 3 193 -2 8 1422 672 213 88 0 chr9 109821114 109821250 -14254922 + B1_Mur2 SINE Alu 1 148 -1 8 1422 180 77 0 0 chr9 109821251 109821277 -14254895 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 8 1422 747 90 0 0 chr9 109821326 109821448 -14254724 + (TC)n Simple_repeat Simple_repeat 1 122 0 8 1422 180 0 0 0 chr9 109821448 109821468 -14254704 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1422 479 269 9 0 chr9 109821474 109821582 -14254590 + Lx8 LINE L1 7223 7331 -142 8 1422 647 25 12 0 chr9 109821582 109821663 -14254509 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 8 1422 713 154 58 14 chr9 109821666 109821804 -14254368 + B1_Mur4 SINE Alu 7 150 0 8 1422 323 224 214 0 chr9 109821901 109821999 -14254173 + PB1D9 SINE Alu 1 119 -1 8 1422 234 0 0 0 chr9 109822149 109822175 -14253997 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1422 477 90 0 0 chr9 109822299 109822366 -14253806 + (GA)n Simple_repeat Simple_repeat 2 68 0 8 1422 319 267 5 0 chr9 109822824 109822898 -14253274 + B1F1 SINE Alu 1 76 -51 8 1422 765 200 136 31 chr9 109822939 109823130 -14253042 + ID_B1 SINE B4 11 221 -3 8 1422 343 333 8 39 chr9 109823134 109823262 -14252910 + RSINE1 SINE B4 3 126 -39 9 1422 281 253 13 26 chr9 109823427 109823504 -14252668 + B4A SINE B4 3 78 -214 9 1422 227 217 44 88 chr9 109823504 109823518 -14252654 + B3A SINE B2 3 89 -109 9 1422 398 293 0 41 chr9 109823518 109823639 -14252533 + B4A SINE B4 157 272 -20 9 1422 287 265 37 13 chr9 109823712 109823811 -14252361 + B4 SINE B4 80 186 -106 9 1422 369 93 0 0 chr9 109823899 109823953 -14252219 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1422 411 209 26 25 chr9 109824101 109824220 -14251952 + B3A SINE B2 1 189 -27 9 1422 225 0 0 0 chr9 109824228 109824253 -14251919 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1422 390 252 76 19 chr9 109824384 109824489 -14251683 - B1F SINE Alu -21 128 18 9 1422 576 250 63 21 chr9 109824532 109824675 -14251497 - B1_Mur1 SINE Alu 0 149 1 9 1422 269 293 102 47 chr9 109824733 109824948 -14251224 + L1MC4 LINE L1 7816 8042 0 9 1422 526 264 16 23 chr9 109825427 109825555 -14250617 - B1_Mur1 SINE Alu 0 149 23 9 1422 29 0 0 0 chr9 109825566 109825595 -14250577 + AT_rich Low_complexity Low_complexity 1 29 0 9 1422 275 273 0 0 chr9 109825608 109825663 -14250509 + ID_B1 SINE B4 87 141 -83 9 1422 1377 56 0 0 chr9 109825673 109825908 -14250264 + (CA)n Simple_repeat Simple_repeat 1 235 0 9 1422 341 299 142 38 chr9 109825948 109826160 -14250012 - B4A SINE B4 -18 274 41 9 1422 819 185 13 20 chr9 109826186 109826335 -14249837 - B1_Mur3 SINE Alu 0 149 2 9 1422 272 246 28 42 chr9 109826651 109826723 -14249449 - ID4_ SINE ID -12 71 1 9 1422 204 158 0 0 chr9 109826743 109826781 -14249391 + CT-rich Low_complexity Low_complexity 3 40 0 9 1422 1155 55 0 58 chr9 109827540 109827695 -14248477 + B1_Mm SINE Alu 2 147 0 9 1422 337 224 0 141 chr9 109827896 109827912 -14248260 + PB1D10 SINE Alu 1 16 -101 9 1422 2611 128 7 39 chr9 109827912 109828319 -14247853 - ORR1B1 LTR MaLR 0 394 1 9 1422 337 224 0 141 chr9 109828319 109828401 -14247771 + PB1D10 SINE Alu 17 85 -32 9 1422 653 239 15 0 chr9 109828435 109828569 -14247603 + B1_Mur1 SINE Alu 2 137 -12 9 1422 222 37 0 0 chr9 109828569 109828596 -14247576 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 9 1422 318 143 0 0 chr9 109828659 109828707 -14247465 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 1422 417 39 0 0 chr9 109828707 109828758 -14247414 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1422 318 143 0 0 chr9 109828758 109828765 -14247407 + (TA)n Simple_repeat Simple_repeat 1 7 0 9 1422 362 254 181 0 chr9 109828767 109828945 -14247227 + ID_B1 SINE B4 7 217 -7 9 1422 323 341 71 14 chr9 109828928 109828951 -14247221 + B4 SINE B4 70 168 -124 9 1422 550 202 9 37 chr9 109828951 109829059 -14247113 + B1_Mur3 SINE Alu 7 111 -38 9 1422 276 30 0 0 chr9 109829075 109829108 -14247064 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 9 1422 653 258 53 35 chr9 109829162 109829331 -14246841 + B3A SINE B2 26 197 -1 9 1422 215 296 74 51 chr9 109829736 109829892 -14246280 - MIR3 SINE MIR -41 167 13 9 1422 1390 62 45 0 chr9 109829966 109830145 -14246027 - B2_Mm1t SINE B2 -6 187 1 9 1422 641 197 25 8 chr9 109830147 109830265 -14245907 - PB1D9 SINE Alu 0 120 1 9 1422 406 266 32 11 chr9 109830265 109830348 -14245824 - B1F SINE Alu -47 102 18 9 1422 251 294 15 0 chr9 109830561 109830629 -14245543 - ID_B1 SINE B4 -51 173 105 9 1422 1380 87 0 20 chr9 109830630 109830829 -14245343 - B2_Mm2 SINE B2 0 195 1 9 1422 490 243 29 0 chr9 109830964 109831067 -14245105 - PB1D10 SINE Alu 0 117 12 9 1422 514 213 55 0 chr9 109831086 109831213 -14244959 - B1_Mus2 SINE Alu 0 147 14 9 1422 260 229 16 16 chr9 109831201 109831263 -14244909 - PB1D9 SINE Alu -58 62 1 9 1422 664 197 16 24 chr9 109831304 109831429 -14244743 + B1_Mur4 SINE Alu 27 150 0 9 1422 282 250 95 0 chr9 109831454 109831538 -14244634 - B1F SINE Alu -13 136 45 9 1422 29 0 0 0 chr9 109831572 109831601 -14244571 + AT_rich Low_complexity Low_complexity 1 29 0 9 1422 1151 113 44 22 chr9 109831601 109831782 -14244390 - B2_Mm2 SINE B2 -9 186 2 9 1422 760 232 14 0 chr9 109831787 109831929 -14244243 - B1_Mur1 SINE Alu -5 144 1 9 1422 1129 102 38 38 chr9 109831940 109832123 -14244049 - B2_Mm2 SINE B2 -8 187 5 9 1422 2264 154 182 81 chr9 109832251 109832773 -14243399 - RMER15 LTR ERVL 0 575 1 9 1422 188 226 94 31 chr9 109832867 109832931 -14243241 - MIR SINE MIR -78 184 117 9 1422 546 243 34 27 chr9 109833361 109833509 -14242663 + B1F SINE Alu 1 149 0 9 1422 1277 21 7 0 chr9 109833640 109833784 -14242388 - B1_Mm SINE Alu -1 146 2 9 1422 224 200 0 179 chr9 109836129 109836196 -14239976 - B2_Mm2 SINE B2 -94 101 47 9 1422 947 127 126 6 chr9 109836264 109836423 -14239749 - B2_Mm1t SINE B2 -14 179 2 9 1422 1193 102 0 0 chr9 109836458 109836605 -14239567 + B1_Mus1 SINE Alu 2 148 0 9 1422 258 116 0 0 chr9 109836835 109836878 -14239294 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1422 1005 41 0 0 chr9 109836878 109837001 -14239171 - B1_Mm SINE Alu 0 147 25 9 1422 484 235 41 193 chr9 109836883 109837025 -14239147 - B4 SINE B4 -71 221 102 9 1422 480 128 0 0 chr9 109837025 109837103 -14239069 + (TG)n Simple_repeat Simple_repeat 1 78 0 9 1422 499 200 90 0 chr9 109837103 109837203 -14238969 - RSINE1 SINE B4 -40 125 17 9 1422 334 169 63 63 chr9 109837250 109837345 -14238827 - PB1D9 SINE Alu 0 120 26 9 1422 772 235 101 10 chr9 109837361 109837559 -14238613 - B3 SINE B2 0 216 1 9 1422 426 177 9 86 chr9 109837561 109837666 -14238506 - B1F SINE Alu 0 149 53 9 1422 491 190 181 0 chr9 109837693 109837809 -14238363 - B1_Mm SINE Alu 0 147 11 9 1422 830 165 29 29 chr9 109837835 109837972 -14238200 - B1_Mus1 SINE Alu -11 137 1 9 1422 319 169 45 30 chr9 109838202 109838269 -14237903 - PB1 SINE Alu -10 117 50 9 1423 271 195 0 21 chr9 109838426 109838486 -14237686 - PB1D9 SINE Alu -4 123 67 9 1423 970 122 146 0 chr9 109838594 109838758 -14237414 + B2_Mm1t SINE B2 2 189 -4 9 1423 281 221 0 68 chr9 109838821 109838894 -14237278 - PB1D9 SINE Alu -78 71 4 9 1423 671 138 132 44 chr9 109838986 109839122 -14237050 - B1_Mus1 SINE Alu 0 148 1 9 1423 844 189 52 17 chr9 109839236 109839408 -14236764 + BGLII_B LTR ERVK 264 441 0 9 1423 216 250 89 0 chr9 109839682 109839738 -14236434 - B1F SINE Alu -13 136 76 9 1423 446 327 45 6 chr9 109839886 109840043 -14236129 - RSINE1 SINE B4 0 165 3 9 1423 405 58 0 0 chr9 109840102 109840154 -14236018 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 1423 560 138 195 17 chr9 109840154 109840272 -14235900 - B1_Mus1 SINE Alu -1 147 9 9 1423 217 273 0 83 chr9 109840219 109840279 -14235893 - B4A SINE B4 -149 143 89 9 1423 617 34 0 33 chr9 109840411 109840501 -14235671 + L1Md_F3 LINE L1 6498 6584 0 9 1423 841 177 0 45 chr9 109840510 109840664 -14235508 + B1_Mus1 SINE Alu 1 147 -1 9 1423 207 0 0 0 chr9 109840725 109840748 -14235424 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1423 1263 62 0 0 chr9 109840748 109840894 -14235278 - B1_Mus2 SINE Alu 0 147 2 9 1423 306 279 38 0 chr9 109841027 109841106 -14235066 + PB1 SINE Alu 21 102 -25 9 1423 341 266 12 12 chr9 109841146 109841226 -14234946 - ID4_ SINE ID -1 82 3 9 1423 428 258 100 15 chr9 109841289 109841419 -14234753 - B3A SINE B2 -12 186 46 9 1423 282 239 141 0 chr9 109841710 109841781 -14234391 + ID_B1 SINE B4 132 212 -12 9 1423 32 0 0 0 chr9 109841781 109841813 -14234359 + AT_rich Low_complexity Low_complexity 1 32 0 9 1423 1135 65 22 0 chr9 109841813 109841951 -14234221 - B1_Mm SINE Alu -5 142 2 9 1423 797 226 109 16 chr9 109841983 109842176 -14233996 + B3 SINE B2 6 216 0 9 1423 328 252 176 9 chr9 109842204 109842312 -14233860 + RSINE1 SINE B4 2 127 -38 9 1423 267 292 25 42 chr9 109842521 109842639 -14233533 + PB1D7 SINE Alu 1 116 -4 9 1423 568 164 81 9 chr9 109842646 109842757 -14233415 + B1_Mur1 SINE Alu 26 144 -5 9 1423 1298 35 0 0 chr9 109842907 109843051 -14233121 - B1_Mus1 SINE Alu 0 148 5 9 1423 23 54 0 0 chr9 109843112 109843149 -14233023 + AT_rich Low_complexity Low_complexity 1 37 0 9 1423 204 40 0 0 chr9 109843223 109843248 -14232924 + (TC)n Simple_repeat Simple_repeat 1 25 0 9 1423 198 0 0 0 chr9 109843248 109843269 -14232903 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1423 515 305 170 30 chr9 109843274 109843544 -14232628 - Lx8 LINE L1 -150 7323 7016 9 1423 303 93 0 0 chr9 109843545 109843588 -14232584 + (GGAGA)n Simple_repeat Simple_repeat 4 46 0 9 1423 1027 127 30 12 chr9 109843617 109843784 -14232388 + B2_Mm2 SINE B2 21 190 -5 9 1423 248 275 14 14 chr9 109843801 109843871 -14232301 - B4 SINE B4 -205 87 18 9 1423 21 0 0 0 chr9 109843903 109843924 -14232248 + AT_rich Low_complexity Low_complexity 1 21 0 9 1423 758 231 53 34 chr9 109843926 109844132 -14232040 - B3 SINE B2 -6 210 1 9 1423 713 263 65 45 chr9 109844366 109844657 -14231515 + Lx6 LINE L1 7082 7378 -82 9 1423 22 0 0 0 chr9 109844682 109844704 -14231468 + AT_rich Low_complexity Low_complexity 1 22 0 9 1423 918 214 141 169 chr9 109844714 109845096 -14231076 - L1MB7 LINE L1 -47 6137 5727 1 1423 1097 53 30 0 chr9 109845096 109845229 -14230943 + B1_Mus1 SINE Alu 2 138 -10 1 1423 342 0 0 0 chr9 109845229 109845267 -14230905 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1423 918 214 141 169 chr9 109845267 109845711 -14230461 - L1MB7 LINE L1 -458 5726 5334 1 1423 416 278 6 95 chr9 109845727 109845906 -14230266 - RSINE1 SINE B4 0 165 3 1 1423 1365 81 21 26 chr9 109845996 109846187 -14229985 + B2_Mm2 SINE B2 2 191 -4 1 1423 272 239 0 0 chr9 109846204 109846250 -14229922 + B3 SINE B2 84 129 -87 1 1423 668 180 0 39 chr9 109846246 109846373 -14229799 - B1_Mm SINE Alu -24 123 2 1 1423 752 159 7 42 chr9 109846560 109846704 -14229468 - B1_Mur4 SINE Alu -11 139 1 1 1423 1417 91 5 21 chr9 109846719 109846909 -14229263 - B2_Mm2 SINE B2 -7 188 2 1 1423 1191 70 7 0 chr9 109846940 109847083 -14229089 + B1_Mus1 SINE Alu 5 148 0 1 1423 371 173 79 13 chr9 109847148 109847224 -14228948 - RSINE1 SINE B4 -41 124 44 1 1423 408 273 63 21 chr9 109847288 109847430 -14228742 - B1F1 SINE Alu -1 148 1 1 1423 274 198 57 2 chr9 109847696 109847756 -14228416 + B1F SINE Alu 56 149 0 1 1423 767 148 102 0 chr9 109847762 109847890 -14228282 + B1_Mus1 SINE Alu 5 145 -3 1 1423 666 201 119 60 chr9 109847929 109848114 -14228058 + B3A SINE B2 2 197 -1 1 1423 789 249 22 53 chr9 109848270 109848495 -14227677 - ID_B1 SINE B4 0 224 7 1 1423 3018 40 3 6 chr9 109848547 109848897 -14227275 - L1Md_F3 LINE L1 -14 6570 6222 1 1423 283 304 0 0 chr9 109848900 109848956 -14227216 - ID_B1 SINE B4 -70 154 99 1 1423 859 164 39 0 chr9 109849078 109849206 -14226966 - B1_Mur3 SINE Alu -16 133 1 1 1423 1374 158 171 188 chr9 109849266 109849740 -14226432 + RMER4A LTR ERVK 1 466 0 1 1423 555 16 0 0 chr9 109850055 109850119 -14226053 + (TTCTC)n Simple_repeat Simple_repeat 1 64 0 1 1423 373 77 15 30 chr9 109850119 109850186 -14225986 + (CCCCCT)n Simple_repeat Simple_repeat 6 71 0 1 1423 274 261 68 0 chr9 109850393 109850481 -14225691 - L1M4 LINE L1 -568 5616 5523 1 1423 319 233 32 43 chr9 109850505 109850599 -14225573 - PB1D10 SINE Alu -1 116 24 1 1423 297 0 0 0 chr9 109850740 109850773 -14225399 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1423 231 274 46 46 chr9 109850773 109850838 -14225334 - ID_B1 SINE B4 -84 140 76 1 1423 302 239 7 14 chr9 109851810 109851896 -14224276 + PB1D9 SINE Alu 51 148 -1 1 1423 560 183 46 77 chr9 109851902 109852032 -14224140 + B3 SINE B2 2 127 -89 1 1423 306 203 106 30 chr9 109852020 109852086 -14224086 + B3 SINE B2 57 127 -89 1 1423 493 228 155 16 chr9 109852074 109852203 -14223969 + B3 SINE B2 57 203 -13 1 1423 1162 116 16 42 chr9 109852206 109852395 -14223777 - B2_Mm2 SINE B2 -10 185 2 1 1423 273 346 39 29 chr9 109852503 109852607 -14223565 - ID_B1 SINE B4 -24 200 96 1 1423 216 369 47 39 chr9 109852607 109852624 -14223548 - B1F SINE Alu -21 101 1 1 1423 1293 61 0 0 chr9 109852633 109852781 -14223391 - B1_Mus1 SINE Alu 0 148 1 1 1423 269 304 63 0 chr9 109853144 109853223 -14222949 - RSINE1 SINE B4 -38 127 44 1 1423 609 226 49 42 chr9 109853279 109853422 -14222750 - RSINE1 SINE B4 -19 146 3 1 1423 1248 41 0 26 chr9 109853695 109853847 -14222325 - B1_Mus1 SINE Alu 0 148 1 1 1423 659 212 79 14 chr9 109853956 109854095 -14222077 + B1_Mur1 SINE Alu 1 148 -1 1 1423 37 39 0 0 chr9 109854534 109854585 -14221587 + AT_rich Low_complexity Low_complexity 1 51 0 1 1423 599 211 48 24 chr9 109854883 109855009 -14221163 + ID_B1 SINE B4 93 221 -3 1 1423 753 135 75 8 chr9 109855095 109855229 -14220943 + B1_Mus1 SINE Alu 5 147 -1 1 1423 180 0 0 0 chr9 109855357 109855377 -14220795 + (CAG)n Simple_repeat Simple_repeat 1 20 0 1 1423 385 262 172 34 chr9 109855416 109855649 -14220523 + Tigger6a DNA MER2_type 336 600 -483 1 1423 1896 175 107 27 chr9 109855679 109856091 -14220081 - RMER4A LTR ERVK -5 461 17 1 1423 328 277 6 6 chr9 109856106 109856273 -14219899 + CT-rich Low_complexity Low_complexity 4 170 0 1 1423 643 138 144 16 chr9 109856274 109856399 -14219773 - B1_Mur2 SINE Alu -8 141 1 1 1423 356 273 26 65 chr9 109856400 109856553 -14219619 + Tigger6a DNA MER2_type 633 779 -304 1 1423 278 342 13 0 chr9 109856740 109856816 -14219356 - B1F SINE Alu -30 119 43 1 1423 349 330 45 9 chr9 109856860 109856970 -14219202 - B1F1 SINE Alu -30 119 6 1 1423 459 285 19 94 chr9 109857001 109857160 -14219012 - B1F2 SINE Alu 0 149 3 1 1423 302 226 15 75 chr9 109857232 109857297 -14218875 - PB1D7 SINE Alu -40 80 19 1 1423 459 194 50 70 chr9 109857297 109857397 -14218775 + PB1D9 SINE Alu 2 99 -21 1 1423 504 256 148 55 chr9 109857498 109857680 -14218492 - B3 SINE B2 -11 205 7 1 1423 837 68 246 0 chr9 109857705 109857823 -14218349 - B1_Mm SINE Alu 0 147 1 1 1423 492 233 108 0 chr9 109857983 109858112 -14218060 - B1F SINE Alu -6 143 1 1 1423 30 0 0 0 chr9 109858112 109858142 -14218030 + AT_rich Low_complexity Low_complexity 1 30 0 1 1423 794 166 7 21 chr9 109858142 109858284 -14217888 + B1_Mus1 SINE Alu 9 148 0 1 1423 1058 60 0 0 chr9 109859054 109859187 -14216985 - B1_Mus1 SINE Alu 0 148 16 1 1423 747 224 7 7 chr9 109859249 109859393 -14216779 - B1_Mur1 SINE Alu -5 144 1 1 1423 367 210 86 0 chr9 109859406 109859487 -14216685 - ID_B1 SINE B4 -25 199 112 1 1423 333 228 231 41 chr9 109860054 109860086 -14216086 - L1MC3 LINE L1 -15 7770 7745 1 1423 974 203 345 6 chr9 109860086 109860399 -14215773 + MTD LTR MaLR 1 419 0 1 1423 333 228 231 41 chr9 109860399 109860535 -14215637 - L1MC3 LINE L1 -41 7744 7570 1 1423 518 266 108 15 chr9 109860752 109861012 -14215160 - L1MC3 LINE L1 -282 7503 7220 1 1423 385 210 148 20 chr9 109861098 109861326 -14214846 - L1MC3 LINE L1 -791 6994 6687 1 1423 194 33 67 0 chr9 109861432 109861462 -14214710 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1 1423 1029 94 29 7 chr9 109861465 109861604 -14214568 - B1_Mus2 SINE Alu -5 142 1 1 1423 859 151 13 27 chr9 109862084 109862234 -14213938 + B1_Mus1 SINE Alu 1 148 0 1 1423 648 271 141 32 chr9 109862463 109862711 -14213461 - B4 SINE B4 -13 279 5 1 1423 303 214 0 18 chr9 109862732 109862789 -14213383 - ID_B1 SINE B4 -9 215 160 1 1423 1285 35 7 0 chr9 109863012 109863156 -14213016 - B1_Mm SINE Alu 0 147 3 1 1423 275 215 31 0 chr9 109863300 109863365 -14212807 + CT-rich Low_complexity Low_complexity 3 69 0 1 1423 710 237 0 28 chr9 109863813 109863956 -14212216 + B1F SINE Alu 6 144 -5 1 1423 1276 55 0 0 chr9 109863960 109864106 -14212066 + B1_Mm SINE Alu 2 147 0 1 1423 858 291 125 8 chr9 109864187 109864579 -14211593 - MER44B DNA MER2_type -92 458 21 1 1423 247 355 94 22 chr9 109864989 109865127 -14211045 - B1F SINE Alu 0 149 2 1 1423 274 242 14 83 chr9 109865127 109865193 -14210979 - RSINE1 SINE B4 -84 81 21 1 1423 309 212 30 15 chr9 109865194 109865261 -14210911 - B1_Mus2 SINE Alu -70 77 10 1 1423 274 326 26 137 chr9 109865261 109865347 -14210825 - B4 SINE B4 -128 164 29 1 1423 523 181 26 79 chr9 109865946 109866060 -14210112 + B1_Mur2 SINE Alu 41 148 -1 1 1423 1837 16 0 0 chr9 109866064 109866257 -14209915 + B2_Mm1a SINE B2 1 193 0 1 1423 574 215 20 34 chr9 109866345 109866494 -14209678 + B1F SINE Alu 2 148 -1 1 1423 267 308 15 0 chr9 109866659 109866724 -14209448 - ID4_ SINE ID -16 67 2 1 1423 203 250 0 0 chr9 109866878 109866918 -14209254 + polypyrimidine Low_complexity Low_complexity 4 43 0 1 1423 251 267 0 32 chr9 109866942 109867004 -14209168 - B1F1 SINE Alu -89 60 1 1 1423 260 282 286 15 chr9 109867005 109867138 -14209034 - MLT1J2 LTR MaLR -65 383 215 1 1423 295 284 11 74 chr9 109867152 109867247 -14208925 - ID_B1 SINE B4 -56 168 80 1 1423 381 290 90 0 chr9 109867797 109867897 -14208275 - PB1D10 SINE Alu -6 111 3 1 1423 180 77 0 0 chr9 109868030 109868056 -14208116 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1 1423 670 200 26 65 chr9 109868065 109868220 -14207952 - B1_Mur4 SINE Alu -1 149 1 1 1423 351 0 0 0 chr9 109868292 109868331 -14207841 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1423 578 180 21 99 chr9 109868444 109868586 -14207586 + B1_Mus2 SINE Alu 17 147 0 1 1423 282 284 91 0 chr9 109868623 109868711 -14207461 - L1M5 LINE L1 -1070 5076 4981 1 1423 204 40 0 0 chr9 109868822 109868847 -14207325 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1423 293 225 372 0 chr9 109869107 109869266 -14206906 + ID_B1 SINE B4 2 218 -6 1 1423 328 247 217 43 chr9 109869312 109869388 -14206784 - B4A SINE B4 -1 291 103 1 1423 336 241 0 71 chr9 109869388 109869473 -14206699 - B1_Mus1 SINE Alu -51 97 19 1 1423 685 37 0 0 chr9 109869642 109869724 -14206448 + B2_Mm1t SINE B2 1 82 -111 1 1423 222 269 80 22 chr9 109869724 109869779 -14206393 + B4A SINE B4 1 145 -147 1 1423 431 86 43 0 chr9 109869779 109869849 -14206323 + Lx2A LINE L1 6936 7008 0 1 1423 187 54 54 0 chr9 109870049 109870086 -14206086 + (TTTTTG)n Simple_repeat Simple_repeat 5 43 0 1 1423 242 156 37 219 chr9 109870088 109870133 -14206039 - B1_Mm SINE Alu 0 147 101 1 1423 1304 7 14 0 chr9 109870133 109870278 -14205894 + B1_Mm SINE Alu 1 147 0 1 1423 242 156 37 219 chr9 109870278 109870314 -14205858 - B1_Mm SINE Alu -47 100 81 1 1423 1334 34 0 0 chr9 109870348 109870495 -14205677 - B1_Mus2 SINE Alu 0 147 1 1 1423 1645 54 0 0 chr9 109870565 109870751 -14205421 + B2_Mm1a SINE B2 2 187 -6 1 1423 207 0 0 0 chr9 109870765 109870788 -14205384 + (TATG)n Simple_repeat Simple_repeat 1 23 0 1 1423 808 156 8 0 chr9 109870796 109870924 -14205248 - B2_Mm2 SINE B2 -65 130 2 1 1423 708 225 64 53 chr9 109870942 109871137 -14205035 - B3 SINE B2 -1 197 2 1 1423 1114 54 16 0 chr9 109874059 109874188 -14201984 - B1_Mus1 SINE Alu -15 133 3 1 1423 867 103 17 0 chr9 109874475 109874592 -14201580 + PB1D9 SINE Alu 2 120 0 1 1423 189 107 0 0 chr9 109874592 109874620 -14201552 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1423 405 235 130 20 chr9 109874651 109874751 -14201421 + B1_Mur1 SINE Alu 26 136 -13 1 1423 260 0 57 0 chr9 109874751 109874786 -14201386 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 1 1423 24 0 0 0 chr9 109874821 109874845 -14201327 + AT_rich Low_complexity Low_complexity 1 24 0 1 1423 35 0 0 0 chr9 109875394 109875429 -14200743 + AT_rich Low_complexity Low_complexity 1 35 0 1 1423 1182 71 0 0 chr9 109875430 109875584 -14200588 - B2_Mm2 SINE B2 -41 154 1 1 1423 756 215 0 22 chr9 109875604 109875742 -14200430 + B1_Mm SINE Alu 2 136 -11 1 1423 893 247 101 70 chr9 109875858 109876245 -14199927 - Lx9 LINE L1 -25 7619 7221 1 1423 300 128 112 0 chr9 109876296 109876363 -14199809 - B1_Mur4 SINE Alu -1 148 59 1 1423 1333 130 5 0 chr9 109876505 109876689 -14199483 - B2_Mm1t SINE B2 -8 185 1 1 1423 696 183 0 34 chr9 109876818 109876953 -14199219 - B1_Mur2 SINE Alu -1 147 18 1 1423 54 0 0 0 chr9 109877183 109877237 -14198935 + AT_rich Low_complexity Low_complexity 1 54 0 1 1423 405 0 0 0 chr9 109877319 109877364 -14198808 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1423 1056 44 0 55 chr9 109877665 109877810 -14198362 + B1_Mus2 SINE Alu 1 137 -10 1 1423 216 0 0 0 chr9 109877810 109877834 -14198338 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1423 248 299 189 63 chr9 109877857 109877872 -14198300 + B4 SINE B4 81 156 -136 1 1423 493 207 18 26 chr9 109877872 109877986 -14198186 + PB1D9 SINE Alu 8 120 0 1 1423 248 299 189 63 chr9 109877986 109878000 -14198172 + B4 SINE B4 157 241 -51 1 1423 357 292 11 0 chr9 109878025 109878114 -14198058 + B4A SINE B4 46 135 -157 1 1423 477 76 0 0 chr9 109878189 109878255 -14197917 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1423 208 244 22 0 chr9 109878256 109878301 -14197871 + GA-rich Low_complexity Low_complexity 1 46 0 1 1423 698 257 123 0 chr9 109878320 109878507 -14197665 - B3 SINE B2 -6 210 1 1 1423 458 248 7 44 chr9 109878592 109878720 -14197452 + B1F SINE Alu 1 116 -1 1 1423 30 59 0 0 chr9 109878723 109878774 -14197398 + AT_rich Low_complexity Low_complexity 1 51 0 1 1423 1556 291 118 65 chr9 109878977 109879947 -14196225 - Lx8 LINE L1 -253 7220 6200 1 1423 1258 48 7 0 chr9 109880093 109880239 -14195933 + B1_Mus2 SINE Alu 1 147 0 1 1423 213 39 0 0 chr9 109880239 109880265 -14195907 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1423 219 200 236 0 chr9 109880266 109880321 -14195851 - RSINE1 SINE B4 -93 72 5 1 1423 636 211 177 32 chr9 109880596 109880782 -14195390 + B3 SINE B2 2 214 -2 1 1423 23 0 0 0 chr9 109880824 109880847 -14195325 + AT_rich Low_complexity Low_complexity 1 23 0 1 1423 545 153 130 35 chr9 109880875 109880990 -14195182 - B1F2 SINE Alu -8 141 16 1 1423 463 236 18 45 chr9 109881023 109881134 -14195038 + PB1D10 SINE Alu 1 108 -9 1 1423 733 177 0 39 chr9 109881710 109881839 -14194333 + B1_Mur4 SINE Alu 27 150 0 1 1423 1489 74 26 0 chr9 109881854 109882044 -14194128 + B2_Mm2 SINE B2 1 195 0 1 1423 274 303 29 48 chr9 109882454 109882558 -14193614 - B1F SINE Alu -1 148 47 1 1423 1229 36 99 18 chr9 109882706 109882877 -14193295 + B2_Mm1a SINE B2 9 193 0 1 1423 222 156 0 0 chr9 109883003 109883048 -14193124 + T-rich Low_complexity Low_complexity 1 45 0 1 1423 1038 41 0 222 chr9 109883049 109883238 -14192934 - B1_Mus2 SINE Alu 0 147 1 1 1423 207 0 0 0 chr9 109883238 109883261 -14192911 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1423 1224 70 91 23 chr9 109883279 109883454 -14192718 - B2_Mm2 SINE B2 -6 189 3 1 1423 389 273 121 19 chr9 109883533 109883690 -14192482 + ID_B1 SINE B4 32 204 -20 1 1423 258 298 0 17 chr9 109883756 109883814 -14192358 - B4 SINE B4 -5 287 231 1 1423 581 297 0 30 chr9 109883826 109883958 -14192214 - RSINE1 SINE B4 -35 130 3 1 1423 407 246 231 11 chr9 109883975 109884158 -14192014 - B4 SINE B4 -69 223 1 1 1423 394 218 0 18 chr9 109884503 109884615 -14191557 + CT-rich Low_complexity Low_complexity 5 114 0 1 1423 943 97 97 0 chr9 109884615 109884749 -14191423 - B1_Mus1 SINE Alu 0 148 2 1 1423 711 152 0 26 chr9 109884841 109884956 -14191216 + B2_Mm1t SINE B2 2 113 -80 1 1423 3735 106 70 6 chr9 109884940 109885601 -14190571 - MT-int LTR MaLR -452 646 1 1 1423 813 75 0 0 chr9 109885603 109885709 -14190463 + MTB_Mm LTR MaLR 9 114 -293 1 1423 650 126 26 26 chr9 109885659 109885773 -14190399 - MTB_Mm LTR MaLR -293 114 1 1 1423 534 333 16 11 chr9 109885895 109886083 -14190089 - B3A SINE B2 -9 189 1 1 1423 843 248 20 25 chr9 109886103 109886306 -14189866 - B3 SINE B2 -14 202 1 1 1423 595 224 90 0 chr9 109886338 109886472 -14189700 + B1_Mus1 SINE Alu 1 146 -2 1 1423 426 320 84 17 chr9 109886502 109886680 -14189492 - B3A SINE B2 0 198 9 1 1423 253 344 11 0 chr9 109886753 109886846 -14189326 - PB1D10 SINE Alu -18 99 6 1 1423 236 359 55 36 chr9 109887132 109887242 -14188930 + PB1D7 SINE Alu 1 112 -8 1 1423 258 233 110 0 chr9 109887176 109887249 -14188923 + ID_B1 SINE B4 143 223 -1 1 1423 207 0 0 0 chr9 109887381 109887404 -14188768 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1423 1253 48 0 0 chr9 109887404 109887541 -14188631 - B1_Mus2 SINE Alu -8 139 3 1 1423 211 225 147 53 chr9 109887785 109887860 -14188312 + MIRm SINE MIR 99 180 -96 1 1423 264 203 136 0 chr9 109887873 109887932 -14188240 + B4A SINE B4 81 147 -145 1 1423 330 238 205 5 chr9 109887884 109887980 -14188192 + B1_Mur2 SINE Alu 9 118 -31 1 1423 290 112 9 36 chr9 109888266 109888339 -14187833 - B1_Mur4 SINE Alu 0 150 48 1 1423 504 45 0 0 chr9 109888556 109888623 -14187549 + (TTCTC)n Simple_repeat Simple_repeat 2 68 0 1 1423 1062 98 24 12 chr9 109888630 109888795 -14187377 - B2_Mm2 SINE B2 -1 194 28 1 1423 261 0 0 0 chr9 109888842 109888871 -14187301 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1423 1146 80 0 0 chr9 109888871 109889008 -14187164 - B1_Mus2 SINE Alu -10 137 1 1 1423 3139 156 56 36 chr9 109889346 109889827 -14186345 - MurERV4-int LTR ERVK -105 5155 4653 1 1423 1205 151 16 21 chr9 109889827 109890017 -14186155 - B2_Mm2 SINE B2 -6 189 1 1 1423 3139 156 56 36 chr9 109890017 109890045 -14186127 - MurERV4-int LTR ERVK -608 4652 4626 1 1423 1167 36 28 21 chr9 109890045 109890178 -14185994 + B1_Mm SINE Alu 2 137 -10 1 1423 265 24 0 45 chr9 109890178 109890222 -14185950 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1423 3139 156 56 36 chr9 109890231 109890325 -14185847 - MurERV4-int LTR ERVK -635 4625 4539 1 1423 426 155 0 14 chr9 109890734 109890806 -14185366 - MurERV4-int LTR ERVK -716 4544 4474 1 1423 461 108 205 0 chr9 109890806 109890889 -14185283 + RMER6B LTR ERVK 1 100 -361 1 1423 224 213 21 0 chr9 109890898 109890945 -14185227 + C-rich Low_complexity Low_complexity 5 52 0 1 1423 413 36 0 18 chr9 109890945 109891001 -14185171 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 1 1423 379 168 238 25 chr9 109891002 109891124 -14185048 + RMER6B LTR ERVK 91 238 -223 1 1423 5279 99 35 10 chr9 109891154 109892324 -14183848 + MYSERV6-int LTR ERVK 7735 8959 0 1 1423 1518 179 153 133 chr9 109892324 109892776 -14183396 + RMER6B LTR ERVK 1 461 0 1 1423 9955 143 70 25 chr9 109892776 109894614 -14181558 - MurERV4-int LTR ERVK -781 4479 2559 1 1423 1135 90 6 35 chr9 109894704 109894877 -14181295 + B2_Mm2 SINE B2 2 169 -26 1 1423 319 200 0 0 chr9 109894969 109895029 -14181143 - RLTR42-int LTR ERVK -2587 2935 2876 1 1423 1088 61 61 0 chr9 109895129 109895277 -14180895 - B2_Mm2 SINE B2 -38 157 1 1 1423 217 273 0 132 chr9 109896317 109896393 -14179779 - RSINE1 SINE B4 -98 67 2 1 1423 372 256 190 16 chr9 109896393 109896632 -14179540 - Charlie2b DNA MER1_type -719 2063 1783 1 1423 1229 54 0 26 chr9 109896636 109896787 -14179385 + B1_Mus1 SINE Alu 2 148 0 1 1423 767 271 25 54 chr9 109896872 109897188 -14178984 - RLTR15 LTR ERVK -52 307 1 1 1423 183 42 0 0 chr9 109897371 109897395 -14178777 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1423 1225 41 7 0 chr9 109897400 109897546 -14178626 - B1_Mus2 SINE Alu 0 147 1 1 1423 602 299 72 34 chr9 109897971 109898179 -14177993 - B3A SINE B2 0 216 1 1 1423 287 342 0 37 chr9 109898255 109898337 -14177835 - PB1D10 SINE Alu -38 79 1 1 1423 652 125 71 48 chr9 109898357 109898483 -14177689 - B1_Mur4 SINE Alu -13 137 9 1 1423 1216 55 14 0 chr9 109898503 109898649 -14177523 - B1_Mur4 SINE Alu -1 149 2 1 1423 378 233 44 0 chr9 109898674 109898764 -14177408 - B3 SINE B2 0 216 123 1 1423 1313 168 46 35 chr9 109898819 109899117 -14177055 + RLTR11A LTR ERVK 3 332 -195 1 1423 1922 145 78 6 chr9 109899154 109899487 -14176685 - RLTR15 LTR ERVK 0 359 3 1 1423 24 0 0 0 chr9 109900008 109900032 -14176140 + AT_rich Low_complexity Low_complexity 1 24 0 1 1423 363 266 7 61 chr9 109900768 109900916 -14175256 + L1MC LINE L1 4807 4946 -1200 1 1423 1150 58 43 0 chr9 109900948 109901086 -14175086 - B1_Mm SINE Alu -3 144 1 1 1423 234 0 0 0 chr9 109901096 109901122 -14175050 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1423 1493 63 16 11 chr9 109901129 109901320 -14174852 - B2_Mm1t SINE B2 -1 192 1 1 1423 350 318 182 0 chr9 109901341 109901467 -14174705 - ID_B1 SINE B4 -2 222 74 1 1423 215 250 0 103 chr9 109901490 109901548 -14174624 + PB1 SINE Alu 76 127 0 1 1423 586 147 248 0 chr9 109901758 109901867 -14174305 + B1_Mur4 SINE Alu 5 140 -10 1 1423 404 328 82 22 chr9 109901910 109902094 -14174078 + B3A SINE B2 3 197 -1 1 1423 846 246 31 10 chr9 109903291 109903484 -14172688 - B3A SINE B2 0 198 2 1 1423 283 324 27 0 chr9 109903654 109903728 -14172444 + ID4_ SINE ID 1 76 -7 1 1423 393 227 178 40 chr9 109904023 109904124 -14172048 + PB1D10 SINE Alu 1 115 -2 1 1423 323 315 62 52 chr9 109904128 109904269 -14171903 + B3A SINE B2 2 148 -50 1 1423 285 29 0 0 chr9 109904269 109904303 -14171869 + (TCCG)n Simple_repeat Simple_repeat 2 35 0 1 1423 323 315 62 52 chr9 109904303 109904355 -14171817 + B3A SINE B2 149 197 -1 1 1423 348 226 83 28 chr9 109904582 109904691 -14171481 - B3A SINE B2 -82 116 2 1 1423 346 233 100 0 chr9 109905839 109905929 -14170243 + PB1D9 SINE Alu 2 100 -20 1 1423 198 0 0 0 chr9 109905985 109906007 -14170165 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1423 189 94 0 0 chr9 109906291 109906323 -14169849 + (CCCCAG)n Simple_repeat Simple_repeat 3 34 0 1 1423 374 297 57 14 chr9 109906875 109907015 -14169157 + B1F SINE Alu 3 148 -1 1 1423 213 65 0 0 chr9 109907311 109907342 -14168830 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1423 24 32 0 0 chr9 109907751 109907782 -14168390 + AT_rich Low_complexity Low_complexity 1 31 0 1 1423 749 57 276 0 chr9 109908354 109908459 -14167713 + B1_Mus1 SINE Alu 2 135 -13 1 1423 416 308 0 9 chr9 109908498 109908603 -14167569 + PB1D10 SINE Alu 3 106 -11 1 1423 416 293 8 33 chr9 109908635 109908755 -14167417 - PB1D10 SINE Alu 0 117 1 1 1423 506 286 43 36 chr9 109908863 109909001 -14167171 - B1F1 SINE Alu -9 140 2 1 1423 255 31 0 0 chr9 109909220 109909252 -14166920 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1423 306 0 0 0 chr9 109909252 109909285 -14166887 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1423 813 199 7 7 chr9 109909764 109909906 -14166266 - B1_Mur4 SINE Alu 0 150 9 1 1423 423 0 0 0 chr9 109909914 109909961 -14166211 + (TTCCC)n Simple_repeat Simple_repeat 1 47 0 1 1423 979 140 122 6 chr9 109909965 109910137 -14166035 - B2_Mm2 SINE B2 -2 193 2 1 1423 222 91 0 0 chr9 109910250 109910283 -14165889 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1423 238 322 86 32 chr9 109910392 109910485 -14165687 + B4A SINE B4 3 100 -192 1 1423 503 232 273 23 chr9 109910498 109910714 -14165458 - RMER15 LTR ERVL -14 561 292 1 1423 288 244 231 0 chr9 109910766 109910844 -14165328 + B4 SINE B4 138 233 -59 1 1423 539 211 27 9 chr9 109910845 109910955 -14165217 - B1_Mur2 SINE Alu 0 149 38 1 1423 252 269 73 49 chr9 109910889 109910971 -14165201 - MT2B LTR ERVL -344 257 174 1 1423 486 260 141 90 chr9 109911208 109911349 -14164823 + L1MB2 LINE L1 4609 4756 -1384 1 1423 363 267 64 37 chr9 109911349 109911458 -14164714 + PB1D10 SINE Alu 2 113 -4 1 1423 486 260 141 90 chr9 109911458 109911627 -14164545 + L1MB2 LINE L1 4757 4943 -1197 1 1423 663 211 232 11 chr9 109911627 109911804 -14164368 + B3 SINE B2 1 216 0 1 1423 486 260 141 90 chr9 109911804 109911860 -14164312 + L1MB2 LINE L1 4944 4995 -1145 1 1423 1084 63 0 27 chr9 109911942 109912089 -14164083 - B1_Mus1 SINE Alu 0 148 6 1 1423 594 148 0 0 chr9 109912089 109912190 -14163982 + (CAT)n Simple_repeat Simple_repeat 2 102 0 1 1423 344 209 72 62 chr9 109912276 109912373 -14163799 + ID_B1 SINE B4 121 218 -6 1 1423 318 259 0 2 chr9 109912399 109912468 -14163704 + PB1D10 SINE Alu 49 127 0 1 1423 1104 37 0 0 chr9 109912489 109912623 -14163549 + B1_Mus2 SINE Alu 7 140 -7 1 1423 306 266 35 99 chr9 109912522 109912664 -14163508 + RLTR25B LTR ERVK 441 573 -455 1 1423 612 259 155 15 chr9 109912665 109912803 -14163369 + L1MB2 LINE L1 5720 5877 -294 1 1423 226 280 65 26 chr9 109912803 109912880 -14163292 + ID4_ SINE ID 4 83 0 1 1423 612 259 155 15 chr9 109912880 109913070 -14163102 + L1MB2 LINE L1 5878 6093 -78 1 1423 384 22 0 0 chr9 109913199 109913244 -14162928 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1423 1234 61 0 0 chr9 109913270 109913417 -14162755 + B1_Mm SINE Alu 1 147 0 1 1423 653 228 154 0 chr9 109913686 109913835 -14162337 + B3 SINE B2 1 172 -44 1 1423 1748 31 5 0 chr9 109914064 109914255 -14161917 - B2_Mm1t SINE B2 0 193 2 1 1423 485 243 0 35 chr9 109914679 109914794 -14161378 - PB1D9 SINE Alu -1 119 9 1 1423 237 222 193 36 chr9 109914683 109914814 -14161358 - B4A SINE B4 -70 222 69 1 1423 1602 70 0 0 chr9 109914814 109915000 -14161172 - B2_Mm1t SINE B2 -6 187 2 1 1423 440 305 11 0 chr9 109915040 109915135 -14161037 - RSINE1 SINE B4 -54 111 16 1 1423 361 298 0 35 chr9 109915194 109915281 -14160891 - ID_B1 SINE B4 -127 97 14 1 1423 360 288 14 83 chr9 109915282 109915426 -14160746 - B1F2 SINE Alu -15 134 1 1 1423 694 249 43 16 chr9 109915479 109915724 -14160448 + ID_B1 SINE B4 50 219 -5 1 1423 438 254 51 0 chr9 109915793 109915911 -14160261 + B1_Mur2 SINE Alu 26 149 0 1 1423 1186 77 0 0 chr9 109915916 109916050 -14160122 + B1_Mus2 SINE Alu 1 134 -13 1 1423 234 0 0 0 chr9 109916050 109916076 -14160096 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1423 537 204 3 12 chr9 109916131 109916241 -14159931 - B1_Mur1 SINE Alu -39 110 1 1 1423 955 302 112 43 chr9 109916247 109916693 -14159479 - ERVL-E-int LTR ERVL -455 5212 4720 1 1423 371 211 0 27 chr9 109916693 109916766 -14159406 + ID4_ SINE ID 2 72 -11 1 1423 955 302 112 43 chr9 109916766 109916880 -14159292 - ERVL-E-int LTR ERVL -948 4719 4613 1 1423 1383 96 11 0 chr9 109917039 109917216 -14158956 + B2_Mm1t SINE B2 1 179 -14 1 1423 428 65 0 24 chr9 109917230 109917328 -14158844 + B2_Mm2 SINE B2 48 190 -5 1 1423 457 280 19 0 chr9 109917772 109917879 -14158293 + RSINE1 SINE B4 5 113 -52 1 1423 338 208 0 53 chr9 109918161 109918237 -14157935 + ID4_ SINE ID 12 83 0 1 1423 216 232 70 18 chr9 109918466 109918523 -14157649 + ID4_ SINE ID 2 61 -22 1 1423 398 246 100 17 chr9 109918526 109918646 -14157526 + ID_B1 SINE B4 84 213 -11 1 1423 482 211 58 0 chr9 109918639 109918743 -14157429 - B1_Mur1 SINE Alu -19 130 21 1 1423 216 0 0 0 chr9 109918958 109918982 -14157190 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1423 466 150 49 24 chr9 109919021 109919103 -14157069 - B1_Mur2 SINE Alu -25 124 41 1 1423 263 213 0 76 chr9 109919045 109919111 -14157061 - 4.5SRNA scRNA scRNA -3 91 31 1 1423 1458 66 49 0 chr9 109919452 109919635 -14156537 + B2_Mm1t SINE B2 1 192 -1 1 1423 1045 153 21 27 chr9 109919898 109920086 -14156086 - B2_Mm2 SINE B2 -8 187 1 1 1423 192 77 0 0 chr9 109920096 109920122 -14156050 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1423 496 323 49 6 chr9 109920146 109920308 -14155864 + ID_B1 SINE B4 4 172 -52 1 1423 357 278 148 11 chr9 109920397 109920579 -14155593 - Charlie1 DNA MER1_type -362 2419 2213 1 1423 464 180 342 0 chr9 109920586 109920697 -14155475 + B1_Mur3 SINE Alu 1 149 0 1 1423 743 239 42 146 chr9 109920858 109920967 -14155205 - B3 SINE B2 0 216 140 1 1423 288 83 67 0 chr9 109920967 109921027 -14155145 + (TATG)n Simple_repeat Simple_repeat 1 64 0 1 1423 743 239 42 146 chr9 109921027 109921157 -14155015 - B3 SINE B2 -77 139 2 1 1423 441 299 65 14 chr9 109921203 109921342 -14154830 - RSINE1 SINE B4 -15 150 5 1 1423 189 0 0 0 chr9 109921399 109921420 -14154752 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1423 222 200 0 0 chr9 109921513 109921527 -14154645 + A-rich Low_complexity Low_complexity 1 14 0 1 1423 769 45 304 0 chr9 109921527 109921639 -14154533 + B1_Mm SINE Alu 2 147 0 1 1423 222 200 0 0 chr9 109921639 109921674 -14154498 + A-rich Low_complexity Low_complexity 15 49 0 1 1423 221 286 204 48 chr9 109921679 109921782 -14154390 + PB1D9 SINE Alu 1 119 -1 1 1423 364 152 355 19 chr9 109922314 109922421 -14153751 - B1_Mur2 SINE Alu -5 144 2 1 1423 336 24 0 0 chr9 109922505 109922546 -14153626 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1423 1061 235 58 133 chr9 109922954 109923450 -14152722 - RLTR12B LTR ERVK -23 505 47 1 1423 791 55 264 0 chr9 109923638 109923748 -14152424 + B1_Mus1 SINE Alu 1 139 -9 1 1423 207 0 0 0 chr9 109923748 109923771 -14152401 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1423 640 292 31 0 chr9 109923993 109924185 -14151987 - B3A SINE B2 0 198 1 1 1423 272 295 26 0 chr9 109924339 109924417 -14151755 + L1MB7 LINE L1 5562 5641 -543 1 1423 227 231 60 60 chr9 109924490 109924573 -14151599 + L1MB7 LINE L1 5808 5890 -288 1 1423 239 268 313 0 chr9 109924594 109924773 -14151399 + L1MB7 LINE L1 5943 6177 -7 1 1423 618 193 24 48 chr9 109924790 109924915 -14151257 + RSINE1 SINE B4 6 127 -38 1 1423 688 186 41 35 chr9 109925064 109925209 -14150963 - B1_Mus1 SINE Alu -1 147 2 1 1423 1106 132 0 0 chr9 109925220 109925387 -14150785 - B2_Mm2 SINE B2 -2 193 27 1 1423 351 65 0 0 chr9 109925480 109925526 -14150646 + (GAGAA)n Simple_repeat Simple_repeat 1 46 0 1 1423 261 68 22 22 chr9 109925580 109925625 -14150547 - B2_Mm2 SINE B2 -150 45 1 1 1423 458 222 93 8 chr9 109925708 109925826 -14150346 - B1_Mur1 SINE Alu -7 142 15 1 1423 392 295 211 8 chr9 109925817 109925950 -14150222 - B3A SINE B2 -36 162 3 1 1423 316 227 14 57 chr9 109925974 109926044 -14150128 - ID4 SINE ID -13 70 4 1 1423 1199 119 37 21 chr9 109926190 109926379 -14149793 - B2_Mm2 SINE B2 0 195 4 1 1423 968 169 72 62 chr9 109926474 109926682 -14149490 - B3 SINE B2 -5 211 2 1 1423 1482 89 11 0 chr9 109926695 109926886 -14149286 - B2_Mm1t SINE B2 0 193 1 1 1423 3875 113 60 44 chr9 109926892 109927531 -14148641 - Lx3A LINE L1 -2 6979 6331 1 1423 21 0 0 0 chr9 109927644 109927665 -14148507 + AT_rich Low_complexity Low_complexity 1 21 0 1 1423 264 161 0 0 chr9 109927892 109927954 -14148218 + (TCTG)n Simple_repeat Simple_repeat 1 62 0 1 1423 256 280 91 91 chr9 109927978 109928088 -14148084 - RSINE1 SINE B4 -53 112 3 1 1423 1143 102 0 20 chr9 109928115 109928265 -14147907 - B1_Mus1 SINE Alu 0 148 2 1 1423 236 330 26 60 chr9 109928332 109928448 -14147724 + ID_B1 SINE B4 65 176 -48 1 1423 474 229 28 19 chr9 109928364 109928471 -14147701 + PB1D9 SINE Alu 13 120 0 1 1423 251 287 100 18 chr9 109928890 109929000 -14147172 - PB1D7 SINE Alu -1 119 1 1 1423 404 19 19 0 chr9 109929212 109929265 -14146907 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1 1423 1286 35 0 0 chr9 109929265 109929410 -14146762 - B1_Mus2 SINE Alu -2 145 1 1 1423 237 147 3 165 chr9 109929412 109929487 -14146685 - B1_Mur1 SINE Alu 0 150 87 1 1423 21 36 0 0 chr9 109929693 109929721 -14146451 + AT_rich Low_complexity Low_complexity 1 28 0 1 1423 383 306 27 9 chr9 109929726 109929838 -14146334 - B4 SINE B4 -149 143 30 1 1423 1809 21 0 0 chr9 109930429 109930622 -14145550 + B2_Mm1a SINE B2 1 193 0 1 1423 278 318 58 12 chr9 109930632 109930718 -14145454 - ID_B1 SINE B4 -30 194 105 1 1423 236 208 31 10 chr9 109930754 109930851 -14145321 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1423 496 322 70 28 chr9 109931074 109931288 -14144884 - ID_B1 SINE B4 0 224 2 1 1423 199 271 124 10 chr9 109931306 109931403 -14144769 + MIR SINE MIR 131 238 -24 1 1423 372 43 0 0 chr9 109931522 109931568 -14144604 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1 1423 1205 78 0 0 chr9 109931589 109931731 -14144441 - B1_Mus2 SINE Alu -5 142 1 1 1423 418 223 38 19 chr9 109931737 109931842 -14144330 - PB1D10 SINE Alu -1 116 10 1 1423 229 309 56 93 chr9 109932391 109932498 -14143674 + PB1D10 SINE Alu 3 105 -12 1 1423 1402 40 108 0 chr9 109932527 109932703 -14143469 + B2_Mm2 SINE B2 1 195 0 1 1423 284 98 0 0 chr9 109932708 109932749 -14143423 + B2_Mm2 SINE B2 1 41 -154 1 1423 1711 26 5 0 chr9 109932749 109932938 -14143234 + B2_Mm1t SINE B2 2 191 -2 1 1423 1106 99 43 6 chr9 109932958 109933121 -14143051 + B2_Mm2 SINE B2 27 195 0 1 1423 450 278 56 0 chr9 109933634 109933760 -14142412 + B1_Mur2 SINE Alu 10 142 -7 1 1423 3103 29 0 36 chr9 109933765 109934124 -14142048 - ORR1A1 LTR MaLR 0 346 1 1 1423 885 118 0 0 chr9 109934178 109934305 -14141867 - B2_Mm2 SINE B2 -64 131 5 1 1423 640 190 12 104 chr9 109934313 109934477 -14141695 - B1_Mur4 SINE Alu 0 150 2 1 1423 398 254 202 35 chr9 109934829 109934943 -14141229 - B1_Mur1 SINE Alu 0 149 17 1 1423 1412 60 5 0 chr9 109935043 109935227 -14140945 - MT2_Mm LTR ERVL 0 493 309 1 1423 1548 58 37 5 chr9 109935291 109935480 -14140692 - B2_Mm2 SINE B2 0 195 1 1 1423 751 212 20 20 chr9 109935693 109935842 -14140330 + B1_Mur4 SINE Alu 2 150 0 1 1423 1005 202 107 0 chr9 109935932 109936110 -14140062 - B3 SINE B2 -18 198 2 1 1423 1498 66 33 0 chr9 109936116 109936299 -14139873 - B2_Mm2 SINE B2 -5 190 2 1 1423 468 313 30 0 chr9 109936345 109936476 -14139696 - RSINE1 SINE B4 -29 136 2 1 1423 977 142 7 7 chr9 109936494 109936643 -14139529 - B1_Mur3 SINE Alu 0 149 1 1 1423 431 158 52 0 chr9 109936743 109936833 -14139339 - B3 SINE B2 -86 130 29 1 1423 291 296 93 44 chr9 109938217 109938443 -14137729 + L2 LINE L2 1548 1784 -1635 1 1423 502 303 33 0 chr9 109938484 109938636 -14137536 + RSINE1 SINE B4 5 161 -4 1 1423 25 0 0 0 chr9 109938636 109938661 -14137511 + AT_rich Low_complexity Low_complexity 1 25 0 1 1423 1487 45 78 0 chr9 109938670 109938849 -14137323 + B2_Mm1a SINE B2 1 193 0 1 1423 1471 79 16 5 chr9 109938862 109939053 -14137119 + B2_Mm2 SINE B2 2 194 -1 1 1423 180 0 0 0 chr9 109939466 109939486 -14136686 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1423 225 234 83 83 chr9 109943816 109943900 -14132272 - Charlie13a DNA Charlie -987 527 444 1 1423 1340 77 55 0 chr9 109944199 109944382 -14131790 + B2_Mm1a SINE B2 1 193 0 1 1423 453 202 44 11 chr9 109944677 109944767 -14131405 + PB1D10 SINE Alu 14 106 -11 1 1423 27 29 0 0 chr9 109944794 109944828 -14131344 + AT_rich Low_complexity Low_complexity 1 34 0 1 1423 1023 283 59 158 chr9 109945172 109945848 -14130324 - RLTR18 LTR ERVK -7 609 1 1 1423 1235 48 0 0 chr9 109946020 109946167 -14130005 + B1_Mus2 SINE Alu 1 147 0 1 1423 397 312 30 78 chr9 109946249 109946416 -14129756 + RSINE1 SINE B4 5 163 -2 1 1423 1235 94 39 6 chr9 109946598 109946780 -14129392 - B2_Mm2 SINE B2 -7 188 1 1 1423 330 248 70 44 chr9 109946932 109947046 -14129126 - PB1D9 SINE Alu -2 118 2 1 1423 3189 146 60 59 chr9 109947095 109947901 -14128271 + RLTR13D3 LTR ERVK 1 1114 0 1 1423 22 0 0 0 chr9 109947972 109947994 -14128178 + AT_rich Low_complexity Low_complexity 1 22 0 1 1423 189 94 0 0 chr9 109948806 109948838 -14127334 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1423 1107 83 14 0 chr9 109948992 109949136 -14127036 + B1_Mus2 SINE Alu 2 147 0 1 1423 423 0 0 0 chr9 109949148 109949195 -14126977 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1423 726 123 9 9 chr9 109950914 109951029 -14125143 - B1_Mur2 SINE Alu -2 147 33 1 1423 309 280 22 81 chr9 109950933 109951069 -14125103 - RLTR25B LTR ERVK -508 520 393 1 1423 465 19 0 0 chr9 109951097 109951151 -14125021 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 1 1423 621 215 61 8 chr9 109951416 109951547 -14124625 + B1_Mur1 SINE Alu 2 139 -10 1 1423 448 313 106 55 chr9 109951603 109951804 -14124368 + B4A SINE B4 5 224 -68 1 1423 881 186 49 5 chr9 109951804 109951988 -14124184 + B2_Mm2 SINE B2 1 192 -3 1 1423 448 313 106 55 chr9 109951988 109952060 -14124112 + B4A SINE B4 225 292 0 1 1423 324 267 13 0 chr9 109952089 109952164 -14124008 + BC1_Mm scRNA scRNA 2 77 -75 1 1423 540 0 0 0 chr9 109952277 109952337 -14123835 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1 1423 476 276 0 0 chr9 109953533 109953631 -14122541 - PB1D9 SINE Alu -7 113 16 1 1423 380 273 143 8 chr9 109953742 109953875 -14122297 + RSINE1 SINE B4 3 153 -12 1 1423 253 295 19 78 chr9 109957035 109957138 -14119034 - RSINE1 SINE B4 -57 108 12 1 1423 240 35 0 0 chr9 109957616 109957645 -14118527 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1423 791 52 0 0 chr9 109957666 109957763 -14118409 - B2_Mm2 SINE B2 -71 124 28 1 1423 402 235 108 0 chr9 109958147 109958249 -14117923 + PB1D7 SINE Alu 3 115 -5 1 1423 649 187 104 0 chr9 109958259 109958393 -14117779 + B1_Mus1 SINE Alu 1 148 0 1 1423 1371 84 16 5 chr9 109958481 109958672 -14117500 - B2_Mm2 SINE B2 -1 194 2 1 1423 366 107 0 0 chr9 109959117 109959173 -14116999 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 1 1423 441 269 93 149 chr9 109959413 109959501 -14116671 + ID_B1 SINE B4 16 217 -7 1 1423 507 254 111 0 chr9 109959501 109959627 -14116545 + B1_Mm SINE Alu 1 140 -7 1 1423 1169 61 0 20 chr9 109960672 109960823 -14115349 - B1_Mus1 SINE Alu 0 148 1 1 1423 1571 36 0 63 chr9 109960837 109960867 -14115305 - B2_Mm1a SINE B2 -1 192 174 1 1423 1681 31 0 0 chr9 109960867 109961058 -14115114 - B2_Mm1t SINE B2 -1 192 2 1 1423 1571 36 0 63 chr9 109961058 109961232 -14114940 - B2_Mm1a SINE B2 -20 173 1 1 1423 357 369 62 6 chr9 109961408 109961585 -14114587 + L1MDb LINE L1 646 832 -5577 1 1423 457 116 116 0 chr9 109961671 109961757 -14114415 + Lx3B LINE L1 6869 6964 -9 1 1423 939 42 0 0 chr9 109961757 109961877 -14114295 + (TAGA)n Simple_repeat Simple_repeat 2 121 0 1 1423 217 156 0 0 chr9 109961958 109961990 -14114182 + RSINE1 SINE B4 49 80 -85 1 1423 21 57 0 0 chr9 109962081 109962116 -14114056 + AT_rich Low_complexity Low_complexity 1 35 0 1 1423 288 0 0 0 chr9 109962131 109962163 -14114009 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 1 1423 504 274 15 30 chr9 109962164 109962296 -14113876 - RSINE1 SINE B4 -33 132 3 1 1423 1580 28 16 0 chr9 109962359 109962541 -14113631 - B2_Mm2 SINE B2 -9 186 2 1 1423 822 179 7 28 chr9 109962556 109962700 -14113472 - B1_Mus1 SINE Alu 0 148 8 1 1423 307 274 109 82 chr9 109962775 109962922 -14113250 - L1MDb LINE L1 -4995 1414 1264 1 1423 225 211 0 50 chr9 109963029 109963089 -14113083 - PB1D7 SINE Alu -1 119 63 1 1423 336 314 63 14 chr9 109963112 109963254 -14112918 + L1MDb LINE L1 1420 1568 -4919 1 1423 268 246 246 34 chr9 109963470 109963588 -14112584 - B4 SINE B4 -149 143 1 1 1423 189 0 0 0 chr9 109963711 109963732 -14112440 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1423 1254 41 0 0 chr9 109963732 109963879 -14112293 - B1_Mus2 SINE Alu 0 147 1 1 1423 23 0 0 0 chr9 109964035 109964058 -14112114 + AT_rich Low_complexity Low_complexity 1 23 0 1 1423 486 169 26 0 chr9 109964137 109964214 -14111958 - B3 SINE B2 -136 80 2 1 1423 505 271 41 0 chr9 109964220 109964342 -14111830 - ID_B1 SINE B4 -2 222 96 1 1423 245 304 87 22 chr9 109964223 109964361 -14111811 + YREP_Mm Unknown Unknown 180 326 -1486 1 1423 244 224 0 0 chr9 109964459 109964508 -14111664 - MurSatRep1 Unknown Unknown -1856 281 233 1 1423 574 300 161 0 chr9 109964571 109964751 -14111421 + ID_B1 SINE B4 8 216 -8 1 1423 339 265 0 0 chr9 109965860 109965928 -14110244 - ID2 SINE ID 0 83 16 1 1423 275 260 27 55 chr9 109966176 109966286 -14109886 + PB1D10 SINE Alu 5 111 -6 1 1423 21 36 0 0 chr9 109966369 109966397 -14109775 + AT_rich Low_complexity Low_complexity 1 28 0 1 1423 259 316 0 0 chr9 109966449 109966506 -14109666 + tRNA-Ala-GCY_ tRNA tRNA 1 57 -18 1 1423 27 0 0 0 chr9 109966687 109966714 -14109458 + AT_rich Low_complexity Low_complexity 1 27 0 1 1423 190 330 91 31 chr9 109967900 109968107 -14108065 - MIRc SINE MIR -44 224 3 1 1423 1177 54 0 13 chr9 109968251 109968400 -14107772 + B1_Mus2 SINE Alu 1 147 0 1 1423 683 225 21 0 chr9 109968622 109968764 -14107408 - B1_Mur1 SINE Alu 0 149 5 1 1423 389 282 0 0 chr9 109968789 109968874 -14107298 + B3A SINE B2 1 85 -113 1 1423 461 127 0 14 chr9 109969084 109969156 -14107016 - B1_Mus2 SINE Alu 0 147 77 1 1424 243 0 0 0 chr9 109970234 109970261 -14105911 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1424 1109 60 0 0 chr9 109970261 109970395 -14105777 - B1_Mus1 SINE Alu -11 137 4 1 1424 253 145 66 0 chr9 109970689 109970765 -14105407 + GA-rich Low_complexity Low_complexity 1 81 0 1 1424 1054 64 50 0 chr9 109971727 109971868 -14104304 + B1_Mus1 SINE Alu 1 148 0 1 1424 270 310 9 83 chr9 109972184 109972195 -14103977 + MT2B LTR ERVL 156 158 -443 1 1424 521 206 20 0 chr9 109972195 109972297 -14103875 + B1_Mus2 SINE Alu 2 105 -42 1 1424 509 327 12 70 chr9 109972342 109972513 -14103659 + RSINE1 SINE B4 2 162 -3 1 1424 212 253 237 13 chr9 109972710 109972862 -14103310 + B2_Mm2 SINE B2 1 186 -9 1 1424 386 301 83 56 chr9 109974343 109974364 -14101808 + ID_B1 SINE B4 76 222 -1 1 1424 415 269 66 25 chr9 109974364 109974486 -14101686 + B1F SINE Alu 23 149 0 1 1424 220 338 0 0 chr9 109975657 109975737 -14100435 + CT-rich Low_complexity Low_complexity 6 85 0 1 1424 601 196 111 15 chr9 109976173 109976308 -14099864 - B1_Mus1 SINE Alu 0 148 1 1 1424 577 27 0 98 chr9 109976518 109976600 -14099572 + B1_Mm SINE Alu 59 132 -15 1 1424 257 213 97 16 chr9 109976609 109976671 -14099501 + ID4 SINE ID 6 72 -11 1 1424 417 294 73 0 chr9 109976623 109976732 -14099440 + ID_B1 SINE B4 26 142 -82 1 1424 472 211 236 24 chr9 109977060 109977225 -14098947 + B4A SINE B4 19 218 -74 1 1424 448 209 261 9 chr9 109977627 109977738 -14098434 + B1_Mur2 SINE Alu 1 139 -10 1 1424 1211 71 129 0 chr9 109977938 109978108 -14098064 + B2_Mm2 SINE B2 1 192 -3 1 1424 375 322 108 87 chr9 109978283 109978569 -14097603 - B4A SINE B4 0 292 1 1 1424 1635 21 21 0 chr9 109978936 109979125 -14097047 + B2_Mm1a SINE B2 1 193 0 1 1424 344 294 0 12 chr9 109979273 109979359 -14096813 - PB1D9 SINE Alu -28 92 8 1 1424 237 31 62 0 chr9 109979632 109979664 -14096508 + B1F SINE Alu 18 51 -98 1 1424 395 258 255 12 chr9 109979771 109979932 -14096240 + B3 SINE B2 1 200 -16 1 1424 327 256 241 29 chr9 109980716 109980853 -14095319 + B4A SINE B4 46 211 -81 1 1424 221 292 75 94 chr9 109981520 109981626 -14094546 - PB1D7 SINE Alu 0 120 17 1 1424 203 217 0 61 chr9 109982804 109982853 -14093319 + polypyrimidine Low_complexity Low_complexity 3 48 0 1 1424 364 301 21 0 chr9 109991372 109991465 -14084707 + B1F SINE Alu 1 95 -54 1 1424 228 67 0 0 chr9 109992253 109992283 -14083889 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1424 745 98 9 18 chr9 109992322 109992436 -14083736 - B1_Mur4 SINE Alu -12 138 26 1 1424 386 274 18 54 chr9 109992496 109992608 -14083564 - PB1D10 SINE Alu 0 117 10 1 1424 439 301 42 80 chr9 109992848 109993061 -14083111 + ID_B1 SINE B4 10 214 -10 1 1424 565 242 8 70 chr9 109993066 109993081 -14083091 + RSINE1 SINE B4 21 32 -133 1 1424 564 221 185 16 chr9 109993081 109993265 -14082907 + ID_B1 SINE B4 3 217 -7 1 1424 565 242 8 70 chr9 109993265 109993378 -14082794 + RSINE1 SINE B4 33 141 -24 1 1424 1367 77 38 0 chr9 109993402 109993585 -14082587 + B2_Mm2 SINE B2 2 191 -4 1 1424 390 260 39 0 chr9 109995782 109995886 -14080286 + PB1D10 SINE Alu 3 110 -7 1 1424 1017 108 57 0 chr9 109995917 109996074 -14080098 + B2_Mm1t SINE B2 14 179 -14 1 1424 317 155 170 28 chr9 109996137 109996243 -14079929 + B2_Mm2 SINE B2 47 187 -6 1 1424 770 94 8 0 chr9 109996265 109996382 -14079790 + (GAAA)n Simple_repeat Simple_repeat 4 121 0 1 1424 229 327 154 27 chr9 109996416 109996526 -14079646 + PB1 SINE Alu 2 125 -2 1 1424 198 0 0 0 chr9 109996708 109996730 -14079442 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1424 982 106 14 0 chr9 109996753 109996895 -14079277 + B1_Mus1 SINE Alu 5 148 0 1 1424 603 244 76 66 chr9 109997377 109997588 -14078584 + B3 SINE B2 1 213 -3 1 1424 276 149 0 0 chr9 109997593 109997640 -14078532 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1 1424 271 244 48 80 chr9 109997658 109997783 -14078389 + BC1_Mm scRNA scRNA 18 138 -14 1 1424 1231 88 0 12 chr9 109997968 109997981 -14078191 - B2_Mm2 SINE B2 -24 171 159 1 1424 243 0 0 0 chr9 109997981 109998008 -14078164 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1424 1231 88 0 12 chr9 109998008 109998167 -14078005 - B2_Mm2 SINE B2 -37 158 1 1 1424 305 237 145 0 chr9 109998169 109998245 -14077927 + L1M4 LINE L1 4677 4763 -1383 1 1424 236 260 152 25 chr9 109998287 109998366 -14077806 + B3 SINE B2 125 213 -3 1 1424 1482 78 0 5 chr9 109998386 109998578 -14077594 + B2_Mm2 SINE B2 1 191 -4 1 1424 1166 55 7 0 chr9 109998658 109998803 -14077369 - B1_Mm SINE Alu 0 147 2 1 1424 254 268 108 54 chr9 109998805 109998935 -14077237 + B1_Mur1 SINE Alu 13 149 0 1 1424 594 269 34 23 chr9 109999011 109999165 -14077007 + B4 SINE B4 11 166 -126 1 1424 716 221 20 46 chr9 109999165 109999317 -14076855 + B1_Mur1 SINE Alu 1 148 -1 1 1424 312 159 15 45 chr9 109999416 109999482 -14076690 + HAL1-3A_ME LINE L1 1977 2040 -818 1 1424 1503 53 16 0 chr9 109999743 109999932 -14076240 + B2_Mm1a SINE B2 2 193 0 1 1424 1152 96 89 11 chr9 110000039 110000219 -14075953 + B2_Mm2 SINE B2 2 195 0 1 1424 698 211 7 13 chr9 110000247 110000396 -14075776 + B1_Mur3 SINE Alu 1 148 -1 2 1424 415 264 19 19 chr9 110000644 110000752 -14075420 + ID_B1 SINE B4 113 220 -4 3 1424 651 171 54 0 chr9 110000763 110000892 -14075280 + B1_Mm SINE Alu 12 147 0 4 1424 180 0 0 0 chr9 110000898 110000918 -14075254 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 5 1424 1479 78 16 0 chr9 110000953 110001145 -14075027 + B2_Mm2 SINE B2 1 195 0 6 1424 342 0 0 0 chr9 110001429 110001467 -14074705 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1424 836 157 14 0 chr9 110001607 110001747 -14074425 + B1_Mur4 SINE Alu 2 143 -7 8 1424 486 202 25 0 chr9 110002443 110002556 -14073616 + PB1D9 SINE Alu 2 120 0 9 1424 214 336 103 55 chr9 110002563 110002708 -14073464 - RSINE1 SINE B4 -8 157 6 1 1424 453 220 60 126 chr9 110004299 110004341 -14071831 + B4 SINE B4 52 81 -211 1 1424 920 97 14 7 chr9 110004341 110004486 -14071686 + B1_Mus2 SINE Alu 2 147 0 1 1424 424 278 35 0 chr9 110004524 110004639 -14071533 + PB1D9 SINE Alu 1 119 -1 1 1424 384 240 106 23 chr9 110004640 110004772 -14071400 + B1F2 SINE Alu 7 149 0 1 1424 261 243 52 39 chr9 110004971 110004985 -14071187 + B3 SINE B2 127 140 -76 1 1424 643 167 72 92 chr9 110004985 110005137 -14071035 - B1_Mur4 SINE Alu -1 149 1 1 1424 261 243 52 39 chr9 110005137 110005199 -14070973 + B3 SINE B2 141 204 -12 1 1424 448 231 29 0 chr9 110005202 110005306 -14070866 + B1_Mur3 SINE Alu 43 149 0 1 1424 1218 21 0 7 chr9 110005309 110005446 -14070726 + B1_Mm SINE Alu 2 138 -9 1 1424 318 26 0 0 chr9 110005446 110005485 -14070687 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1424 245 338 94 0 chr9 110005858 110006018 -14070154 + L1MC5 LINE L1 7751 7925 -36 2 1424 986 80 0 0 chr9 110006082 110006220 -14069952 + B1_Mus2 SINE Alu 2 139 -8 2 1424 278 26 0 25 chr9 110006220 110006260 -14069912 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1424 952 146 214 0 chr9 110006260 110006438 -14069734 + B3 SINE B2 1 216 0 2 1424 278 277 152 63 chr9 110006438 110006456 -14069716 + FAM SINE Alu 294 307 -4 2 1424 1120 144 10 34 chr9 110006456 110006665 -14069507 + Lx2 LINE L1 6794 6997 0 2 1424 204 173 0 118 chr9 110006668 110006753 -14069419 + A-rich Low_complexity Low_complexity 2 76 0 2 1424 320 241 0 33 chr9 110006753 110006843 -14069329 + PB1D10 SINE Alu 31 117 0 2 1424 934 157 0 7 chr9 110007032 110007180 -14068992 + B1_Mus1 SINE Alu 2 148 0 2 1424 316 256 114 49 chr9 110007432 110007555 -14068617 - ID_B1 SINE B4 -9 215 85 2 1424 330 286 44 0 chr9 110007617 110007708 -14068464 + MER58B DNA MER1_type 179 273 -68 3 1424 568 184 39 84 chr9 110007724 110007878 -14068294 + B1_Mur1 SINE Alu 3 149 0 3 1424 402 115 0 0 chr9 110007900 110007961 -14068211 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1424 28 48 0 0 chr9 110007973 110008015 -14068157 + AT_rich Low_complexity Low_complexity 1 42 0 3 1424 340 224 67 45 chr9 110008036 110008125 -14068047 - RSINE1 SINE B4 -72 93 3 3 1424 435 237 10 40 chr9 110008259 110008360 -14067812 - B1F SINE Alu -49 100 3 3 1424 861 176 7 0 chr9 110008905 110009053 -14067119 - B1_Mur4 SINE Alu -1 149 1 3 1424 231 253 116 35 chr9 110009209 110009295 -14066877 - PB1D10 SINE Alu -24 93 1 3 1424 254 38 0 70 chr9 110009315 110009372 -14066800 - B2_Mm1t SINE B2 0 193 141 3 1424 189 0 0 0 chr9 110009372 110009393 -14066779 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1424 1168 51 0 0 chr9 110009393 110009531 -14066641 - B1_Mm SINE Alu -9 138 1 4 1424 1367 94 0 30 chr9 110009531 110009728 -14066444 - B2_Mm2 SINE B2 -2 193 2 4 1424 204 67 0 0 chr9 110009730 110009760 -14066412 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 1424 1182 61 0 0 chr9 110009764 110009912 -14066260 - B1_Mus1 SINE Alu 0 148 1 4 1424 225 270 48 0 chr9 110009968 110010031 -14066141 + AluG_3 SINE Alu 155 220 -91 4 1424 497 212 16 33 chr9 110011520 110011642 -14064530 + LFSINE_Vert SINE SINE 281 400 -59 4 1424 336 287 174 0 chr9 110011894 110012009 -14064163 - ID_B1 SINE B4 -6 218 84 4 1424 393 82 0 16 chr9 110012066 110012128 -14064044 - B1_Mur3 SINE Alu -6 143 83 4 1424 302 206 219 0 chr9 110012136 110012209 -14063963 + RSINE1 SINE B4 58 146 -19 4 1424 1169 70 0 0 chr9 110012291 110012434 -14063738 + B1_Mus2 SINE Alu 5 147 0 4 1424 258 105 0 0 chr9 110012434 110012472 -14063700 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 1424 973 99 28 0 chr9 110012475 110012617 -14063555 + B1_Mus1 SINE Alu 3 148 0 5 1424 434 317 120 0 chr9 110012675 110012817 -14063355 + RSINE1 SINE B4 7 165 0 5 1424 1360 43 0 131 chr9 110012850 110012894 -14063278 + B2_Mm2 SINE B2 2 41 -154 5 1424 1619 27 21 0 chr9 110012894 110013082 -14063090 + B2_Mm1a SINE B2 2 193 0 5 1424 1360 43 0 131 chr9 110013082 110013251 -14062921 + B2_Mm2 SINE B2 42 187 -8 5 1424 279 253 22 33 chr9 110013348 110013438 -14062734 + B1F SINE Alu 49 137 -12 5 1424 424 307 52 32 chr9 110013552 110013804 -14062368 - MIR SINE MIR -2 260 4 5 1424 802 86 145 23 chr9 110013832 110013963 -14062209 + B1_Mus1 SINE Alu 2 148 0 5 1424 871 70 8 30 chr9 110014032 110014164 -14062008 - B1_Mur4 SINE Alu 0 150 22 5 1424 537 243 260 0 chr9 110014241 110014418 -14061754 + ID_B1 SINE B4 2 224 0 5 1424 1215 34 0 13 chr9 110014604 110014753 -14061419 + B1_Mus2 SINE Alu 1 147 0 6 1424 796 97 89 0 chr9 110015177 110015301 -14060871 + B1_Mus1 SINE Alu 13 147 -1 6 1424 956 150 0 0 chr9 110015692 110015839 -14060333 + B1_Mur4 SINE Alu 1 147 -3 6 1424 1110 69 20 14 chr9 110016347 110016494 -14059678 - B1_Mus1 SINE Alu 0 148 1 6 1424 412 232 95 0 chr9 110016505 110016600 -14059572 - PB1D10 SINE Alu 0 117 14 6 1424 243 88 0 0 chr9 110016645 110016679 -14059493 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1424 291 234 16 0 chr9 110016700 110016764 -14059408 - ID_B1 SINE B4 -73 151 87 6 1424 290 263 53 0 chr9 110017285 110017361 -14058811 - ID4 SINE ID -2 81 2 6 1424 734 227 0 0 chr9 110017447 110017588 -14058584 - B1F SINE Alu -7 142 2 6 1424 279 28 0 0 chr9 110018277 110018313 -14057859 + U2 snRNA snRNA 1 36 -152 6 1424 233 305 195 0 chr9 110018453 110018581 -14057591 - MIRc SINE MIR -32 236 84 7 1424 23 0 0 0 chr9 110018846 110018869 -14057303 + AT_rich Low_complexity Low_complexity 1 23 0 7 1424 22 70 0 0 chr9 110019593 110019636 -14056536 + GC_rich Low_complexity Low_complexity 1 43 0 7 1424 237 224 0 0 chr9 110020704 110020753 -14055419 - B3A SINE B2 -69 129 81 7 1424 449 198 42 0 chr9 110020941 110021037 -14055135 - MTD LTR MaLR -308 111 12 7 1424 227 135 0 0 chr9 110021064 110021101 -14055071 - B3A SINE B2 -160 38 2 7 1424 406 169 42 63 chr9 110021238 110021333 -14054839 + PB1D9 SINE Alu 19 111 -9 7 1424 629 289 45 20 chr9 110021969 110022170 -14054002 + B3 SINE B2 1 206 -10 7 1424 1181 128 11 6 chr9 110022233 110022413 -14053759 + B2_Mm2 SINE B2 1 181 -14 7 1424 610 208 0 23 chr9 110022500 110022633 -14053539 - B1_Mm SINE Alu -16 131 2 7 1424 1151 64 0 0 chr9 110022672 110022812 -14053360 + B1_Mus2 SINE Alu 3 142 -5 7 1424 1389 79 21 0 chr9 110023009 110023199 -14052973 + B2_Mm2 SINE B2 1 194 -1 8 1424 200 34 0 33 chr9 110023276 110023306 -14052866 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1424 1043 66 0 7 chr9 110023306 110023444 -14052728 - B1_Mm SINE Alu -10 137 1 8 1424 247 149 0 60 chr9 110023642 110023692 -14052480 - B1F SINE Alu -8 141 95 8 1424 241 132 36 36 chr9 110024103 110024158 -14052014 - B1_Mus1 SINE Alu -90 58 4 8 1424 466 259 54 27 chr9 110024396 110024543 -14051629 - RSINE1 SINE B4 -12 153 3 8 1424 407 254 8 56 chr9 110024960 110025085 -14051087 + PB1D9 SINE Alu 2 120 0 8 1424 1447 23 81 0 chr9 110025146 110025318 -14050854 + B2_Mm1a SINE B2 2 187 -6 8 1424 304 273 0 0 chr9 110025403 110025469 -14050703 + RSINE1 SINE B4 32 97 -68 8 1424 299 263 79 0 chr9 110025568 110025644 -14050528 + RSINE1 SINE B4 82 163 -2 8 1424 1090 94 6 0 chr9 110025674 110025833 -14050339 + B2_Mm2 SINE B2 2 161 -34 8 1424 270 0 0 0 chr9 110025836 110025866 -14050306 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 9 1424 318 331 36 65 chr9 110026001 110026169 -14050003 + RSINE1 SINE B4 3 165 0 9 1424 309 303 30 0 chr9 110026255 110026354 -14049818 + PB1 SINE Alu 26 127 0 9 1424 781 189 0 20 chr9 110026362 110026508 -14049664 + B1_Mus1 SINE Alu 6 148 0 9 1424 730 0 0 22 chr9 110026508 110026600 -14049572 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 9 1424 1239 53 0 203 chr9 110026682 110026727 -14049445 + B2_Mm2 SINE B2 1 40 -155 9 1424 1570 47 5 5 chr9 110026727 110026918 -14049254 + B2_Mm1t SINE B2 1 191 -2 9 1424 1239 53 0 203 chr9 110026918 110027060 -14049112 + B2_Mm2 SINE B2 41 158 -37 9 1424 1036 81 0 29 chr9 110027060 110027199 -14048973 + B1_Mus2 SINE Alu 1 135 -12 9 1424 216 0 0 0 chr9 110027199 110027223 -14048949 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 9 1424 1239 53 0 203 chr9 110027223 110027269 -14048903 + B2_Mm2 SINE B2 159 187 -8 9 1424 399 171 0 0 chr9 110027284 110027360 -14048812 + (TATG)n Simple_repeat Simple_repeat 3 78 0 9 1424 369 278 89 0 chr9 110027438 110027528 -14048644 - RSINE1 SINE B4 -20 145 48 1 1424 1134 93 52 42 chr9 110027591 110027782 -14048390 - B2_Mm2 SINE B2 -2 193 1 1 1424 375 317 0 0 chr9 110027970 110028071 -14048101 - MTE2a LTR MaLR -46 333 233 1 1424 257 197 51 26 chr9 110028254 110028332 -14047840 - ID4_ SINE ID -1 82 3 1 1424 1195 61 0 0 chr9 110028362 110028509 -14047663 + B1_Mus1 SINE Alu 1 147 -1 1 1424 1626 31 0 10 chr9 110028616 110028810 -14047362 - B2_Mm1a SINE B2 0 193 2 1 1424 327 264 146 0 chr9 110028829 110028939 -14047233 - RSINE1 SINE B4 -34 131 6 1 1424 1396 34 62 0 chr9 110028972 110029150 -14047022 - B2_Mm2 SINE B2 -5 190 2 1 1424 826 28 0 0 chr9 110029187 110029295 -14046877 - B1_Mus2 SINE Alu 0 147 40 1 1424 352 123 80 27 chr9 110029230 110029305 -14046867 - RLTR25B LTR ERVK -519 509 431 1 1424 981 127 0 0 chr9 110029390 110029532 -14046640 - B1_Mur4 SINE Alu -8 142 1 1 1424 579 236 39 112 chr9 110029572 110029695 -14046477 - RLTR18B LTR ERVK -322 190 77 1 1424 1573 52 5 0 chr9 110029695 110029887 -14046285 - B2_Mm1a SINE B2 0 193 1 1 1424 579 236 39 112 chr9 110029887 110029968 -14046204 - RLTR18B LTR ERVK -436 76 1 1 1424 516 272 0 0 chr9 110030014 110030139 -14046033 - ID_B1 SINE B4 -20 204 80 1 1424 1151 75 0 20 chr9 110030150 110030300 -14045872 - B1_Mus1 SINE Alu -1 147 1 1 1424 1392 84 11 0 chr9 110030300 110030489 -14045683 - B2_Mm1a SINE B2 -1 192 1 1 1424 23 0 0 0 chr9 110030505 110030528 -14045644 + AT_rich Low_complexity Low_complexity 1 23 0 1 1424 630 214 56 14 chr9 110030551 110030693 -14045479 - RSINE1 SINE B4 -6 159 12 1 1424 286 338 35 21 chr9 110030858 110031000 -14045172 - B1F SINE Alu -2 147 4 1 1424 420 221 12 0 chr9 110031060 110031146 -14045026 - B3 SINE B2 -93 123 37 1 1424 1082 81 6 24 chr9 110031157 110031306 -14044866 + B2_Mm1a SINE B2 33 179 -14 1 1424 1220 55 0 0 chr9 110031306 110031452 -14044720 + B1_Mus2 SINE Alu 2 147 0 1 1424 1082 81 6 24 chr9 110031452 110031466 -14044706 + B2_Mm1a SINE B2 180 193 0 1 1424 315 77 0 0 chr9 110031489 110031540 -14044632 + B2_Mm2 SINE B2 52 102 -91 1 1424 414 167 100 0 chr9 110031584 110031674 -14044498 - PB1D9 SINE Alu -14 106 8 1 1424 287 256 33 22 chr9 110031601 110031693 -14044479 - B4A SINE B4 -125 167 75 1 1424 1155 62 0 0 chr9 110031707 110031851 -14044321 - B1_Mus1 SINE Alu 0 148 5 1 1424 854 219 56 30 chr9 110031963 110032161 -14044011 + B3 SINE B2 14 216 0 1 1424 1335 81 21 16 chr9 110032370 110032559 -14043613 - B2_Mm2 SINE B2 -3 192 3 1 1424 30 0 0 0 chr9 110032559 110032589 -14043583 + AT_rich Low_complexity Low_complexity 1 30 0 1 1424 768 64 0 18 chr9 110032589 110032700 -14043472 - B1_Mm SINE Alu 0 147 39 1 1424 1126 108 10 61 chr9 110032703 110032900 -14043272 - B2_Mm1t SINE B2 -2 191 5 1 1424 1169 61 0 7 chr9 110032920 110033068 -14043104 - B1_Mus2 SINE Alu 0 147 1 1 1424 369 265 87 62 chr9 110033120 110033281 -14042891 - RSINE1 SINE B4 0 165 1 1 1424 343 125 299 10 chr9 110033286 110033383 -14042789 - B1F1 SINE Alu 0 149 25 1 1424 266 283 99 45 chr9 110033399 110033510 -14042662 - RSINE1 SINE B4 -5 160 44 1 1424 509 176 80 51 chr9 110033553 110033691 -14042481 - B1_Mus2 SINE Alu 0 147 6 1 1424 284 267 0 26 chr9 110033622 110033699 -14042473 - MT2B2 LTR ERVL -345 239 165 1 1424 889 62 28 0 chr9 110035382 110035522 -14040650 - B1_Mus2 SINE Alu 0 149 2 1 1424 256 278 16 136 chr9 110035721 110035781 -14040391 - RSINE1 SINE B4 -54 111 54 1 1424 1111 42 35 7 chr9 110035781 110035924 -14040248 - B1_Mm SINE Alu 0 147 1 1 1424 256 278 16 136 chr9 110035924 110035988 -14040184 - RSINE1 SINE B4 -112 53 2 1 1424 458 261 92 87 chr9 110036251 110036469 -14039703 + ID_B1 SINE B4 5 223 -1 1 1424 288 261 80 0 chr9 110036684 110036772 -14039400 - PB1D9 SINE Alu -14 106 12 1 1424 496 271 89 19 chr9 110036842 110037000 -14039172 - B3A SINE B2 -26 172 4 1 1424 729 234 70 0 chr9 110037235 110037436 -14038736 - B3 SINE B2 0 216 2 1 1424 536 140 421 13 chr9 110037533 110037685 -14038487 - B3 SINE B2 0 216 3 1 1424 559 228 169 6 chr9 110037707 110037879 -14038293 - B3 SINE B2 -13 203 4 1 1424 1010 65 14 0 chr9 110038319 110038458 -14037714 - B1_Mus2 SINE Alu -1 146 6 1 1424 365 286 52 8 chr9 110038481 110038615 -14037557 - ID_B1 SINE B4 -4 220 81 1 1424 270 0 0 0 chr9 110038746 110038776 -14037396 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1424 24 0 0 0 chr9 110038776 110038800 -14037372 + AT_rich Low_complexity Low_complexity 1 24 0 1 1424 542 283 51 0 chr9 110038812 110038950 -14037222 - RSINE1 SINE B4 0 165 21 1 1424 201 39 0 0 chr9 110039394 110039420 -14036752 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1424 588 186 78 31 chr9 110039424 110039552 -14036620 - B1_Mur3 SINE Alu -15 134 1 1 1424 288 24 0 0 chr9 110039605 110039646 -14036526 - B1_Mus2 SINE Alu 0 147 107 1 1424 237 83 0 0 chr9 110039646 110039682 -14036490 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1424 462 250 68 61 chr9 110039690 110039822 -14036350 - B1_Mus1 SINE Alu -5 143 11 1 1424 1062 160 39 0 chr9 110039823 110040004 -14036168 + B2_Mm2 SINE B2 3 190 -5 1 1424 233 232 54 0 chr9 110040088 110040144 -14036028 + B3 SINE B2 152 210 -6 1 1424 677 141 91 0 chr9 110040328 110040449 -14035723 + B1_Mur2 SINE Alu 18 149 0 1 1424 497 182 118 8 chr9 110040571 110040698 -14035474 - B1_Mur4 SINE Alu 0 150 10 1 1424 1376 70 27 0 chr9 110040727 110040912 -14035260 - B2_Mm1a SINE B2 -3 190 1 1 1424 1171 134 22 0 chr9 110040924 110041103 -14035069 - B2_Mm1t SINE B2 -10 183 1 1 1424 27 62 0 0 chr9 110041104 110041152 -14035020 + AT_rich Low_complexity Low_complexity 1 48 0 1 1424 282 29 0 0 chr9 110041239 110041274 -14034898 - U2 snRNA snRNA -153 35 1 1 1424 416 308 8 15 chr9 110041487 110041619 -14034553 + ID_B1 SINE B4 90 220 -4 1 1424 898 196 0 0 chr9 110041622 110041770 -14034402 + B1_Mus1 SINE Alu 1 148 0 1 1424 316 185 62 0 chr9 110042307 110042372 -14033800 + B1_Mur3 SINE Alu 1 69 -80 1 1424 342 188 43 0 chr9 110042559 110042628 -14033544 - B1_Mur2 SINE Alu -2 147 76 1 1424 1305 115 0 40 chr9 110042805 110043005 -14033167 - B2_Mm2 SINE B2 -3 192 1 1 1424 1302 20 0 0 chr9 110043066 110043212 -14032960 - B1_Mm SINE Alu -1 146 1 1 1424 1049 156 0 22 chr9 110043248 110043431 -14032741 + B2_Mm2 SINE B2 2 180 -15 1 1424 1138 123 12 64 chr9 110043456 110043692 -14032480 + B2_Mm2 SINE B2 2 210 -6 1 1424 442 290 43 0 chr9 110043723 110043861 -14032311 - RSINE1 SINE B4 -19 146 3 1 1424 21 0 0 0 chr9 110044106 110044127 -14032045 + AT_rich Low_complexity Low_complexity 1 21 0 1 1424 568 230 52 13 chr9 110044179 110044333 -14031839 + RSINE1 SINE B4 2 161 -4 1 1424 23 33 0 0 chr9 110044469 110044499 -14031673 + AT_rich Low_complexity Low_complexity 1 30 0 1 1424 261 0 0 0 chr9 110044663 110044692 -14031480 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 1 1424 198 118 0 0 chr9 110045004 110045038 -14031134 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1424 417 211 56 37 chr9 110045121 110045229 -14030943 - B1_Mur1 SINE Alu -14 135 26 1 1424 1174 62 0 7 chr9 110045253 110045400 -14030772 - B1_Mus1 SINE Alu -2 146 1 1 1424 191 36 0 35 chr9 110045416 110045445 -14030727 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1424 861 236 57 28 chr9 110045446 110045694 -14030478 + MTD LTR MaLR 18 272 -147 1 1424 1034 42 0 46 chr9 110046024 110046175 -14029997 - B1_Mm SINE Alu -1 146 3 1 1424 397 226 6 133 chr9 110046175 110046216 -14029956 - MT2B LTR ERVL -454 147 127 1 1424 294 217 0 0 chr9 110046216 110046285 -14029887 + T-rich Low_complexity Low_complexity 2 70 0 1 1424 1234 92 22 0 chr9 110046294 110046478 -14029694 - B2_Mm2 SINE B2 -1 194 7 1 1424 872 195 264 26 chr9 110046549 110046859 -14029313 - ORR1C2 LTR MaLR 0 384 1 1 1424 389 202 194 0 chr9 110047030 110047187 -14028985 - L1M2 LINE L1 -846 5454 5268 1 1424 1190 42 21 0 chr9 110047229 110047373 -14028799 - B1_Mus1 SINE Alu 0 148 2 1 1424 239 333 63 24 chr9 110047411 110047537 -14028635 + ID_B1 SINE B4 90 220 -4 1 1424 313 151 0 0 chr9 110047908 110047961 -14028211 - B3A SINE B2 -76 122 70 1 1424 926 130 121 23 chr9 110048106 110048279 -14027893 - B2_Mm2 SINE B2 -1 194 5 1 1424 27 0 0 0 chr9 110048301 110048328 -14027844 + AT_rich Low_complexity Low_complexity 1 27 0 1 1424 1146 57 7 0 chr9 110048328 110048469 -14027703 - B1_Mus2 SINE Alu -5 142 1 1 1424 437 241 10 5 chr9 110048471 110048572 -14027600 - PB1D9 SINE Alu -19 98 2 1 1424 465 304 39 39 chr9 110048592 110048746 -14027426 - RSINE1 SINE B4 -8 157 4 1 1424 513 134 0 0 chr9 110048763 110048875 -14027297 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1424 1155 34 14 7 chr9 110048943 110049089 -14027083 + B1_Mm SINE Alu 1 147 0 1 1424 248 297 27 0 chr9 110049136 110049210 -14026962 - ID4 SINE ID -5 78 3 1 1424 351 212 101 0 chr9 110049336 110049435 -14026737 - RSINE1 SINE B4 0 165 57 1 1424 216 229 48 16 chr9 110049972 110050034 -14026138 - B1_Mur2 SINE Alu 0 149 86 2 1424 457 161 75 14 chr9 110050022 110050135 -14026037 - B1_Mur2 SINE Alu -23 126 15 2 1424 248 263 9 104 chr9 110050178 110050284 -14025888 - PB1D9 SINE Alu -21 99 4 2 1424 180 0 0 0 chr9 110050428 110050448 -14025724 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1424 1154 43 0 28 chr9 110050451 110050594 -14025578 - B1_Mus1 SINE Alu -8 140 2 2 1424 523 271 108 78 chr9 110050597 110050762 -14025410 - B3 SINE B2 -5 211 40 2 1424 1714 31 0 0 chr9 110050762 110050955 -14025217 - B2_Mm1t SINE B2 0 193 1 2 1424 523 271 108 78 chr9 110050955 110050993 -14025179 - B3 SINE B2 -177 39 2 2 1424 355 351 45 58 chr9 110050993 110051207 -14024965 - B4A SINE B4 -70 222 12 2 1424 303 191 0 0 chr9 110051226 110051294 -14024878 + CT-rich Low_complexity Low_complexity 4 71 0 2 1424 435 189 0 32 chr9 110051311 110051404 -14024768 - PB1D9 SINE Alu -10 110 21 2 1424 470 234 80 8 chr9 110051537 110051662 -14024510 + B1_Mus2 SINE Alu 2 135 -12 2 1424 1151 134 36 31 chr9 110051722 110051915 -14024257 + B2_Mm2 SINE B2 1 194 -1 2 1424 479 43 0 0 chr9 110051957 110052027 -14024145 + L1_Mus3 LINE L1 6569 6638 0 2 1424 1194 48 7 0 chr9 110052028 110052173 -14023999 + B1_Mus1 SINE Alu 1 146 -2 2 1424 516 275 43 21 chr9 110053038 110053179 -14022993 - B1_Mur1 SINE Alu -5 144 1 2 1424 1113 50 0 47 chr9 110053233 110053381 -14022791 + B1_Mm SINE Alu 2 142 -5 2 1424 231 114 0 0 chr9 110053383 110053427 -14022745 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 2 1424 270 307 45 45 chr9 110053428 110053561 -14022611 - B3 SINE B2 -82 134 2 2 1424 1233 103 36 42 chr9 110053567 110053759 -14022413 - B2_Mm2 SINE B2 -4 191 1 2 1424 324 0 0 0 chr9 110053781 110053817 -14022355 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1424 1165 116 23 0 chr9 110053817 110053989 -14022183 - B2_Mm2 SINE B2 -15 180 5 2 1424 934 95 44 0 chr9 110054013 110054150 -14022022 - B1_Mus1 SINE Alu -2 146 4 2 1424 235 133 0 0 chr9 110054196 110054241 -14021931 + B3A SINE B2 2 46 -152 2 1424 1200 35 0 20 chr9 110054282 110054430 -14021742 - B1_Mus2 SINE Alu 0 147 3 2 1424 600 297 29 0 chr9 110054430 110054605 -14021567 + B3 SINE B2 31 210 -6 2 1424 517 267 20 0 chr9 110054662 110054808 -14021364 + B3 SINE B2 59 207 -9 2 1424 1454 70 11 0 chr9 110055055 110055240 -14020932 - B2_Mm2 SINE B2 -8 187 1 2 1424 300 294 43 0 chr9 110055713 110055805 -14020367 - ID_B1 SINE B4 -1 223 128 2 1424 1604 42 0 0 chr9 110056600 110056792 -14019380 - B2_Mm1a SINE B2 -1 192 1 2 1424 302 227 216 0 chr9 110056914 110057002 -14019170 - ID_B1 SINE B4 -11 213 107 2 1424 202 209 0 0 chr9 110057087 110057114 -14019058 + T-rich Low_complexity Low_complexity 17 43 0 2 1424 1700 16 0 0 chr9 110057114 110057306 -14018866 - B2_Mm1a SINE B2 0 193 2 2 1424 202 209 0 0 chr9 110057306 110057321 -14018851 + T-rich Low_complexity Low_complexity 2 16 0 2 1424 1161 68 0 7 chr9 110057619 110057768 -14018404 - B1_Mus1 SINE Alu 0 148 1 2 1424 660 161 43 71 chr9 110057898 110058038 -14018134 + B1_Mur4 SINE Alu 3 138 -12 2 1424 294 222 0 0 chr9 110058150 110058204 -14017968 - B1_Mur2 SINE Alu -5 144 91 2 1424 493 223 11 0 chr9 110058407 110058501 -14017671 + RSINE1 SINE B4 13 107 -58 2 1424 628 195 37 33 chr9 110058604 110058750 -14017422 - B1_Mus1 SINE Alu 0 148 3 2 1424 662 266 31 52 chr9 110058752 110058946 -14017226 - B3A SINE B2 0 198 9 2 1424 192 40 0 0 chr9 110059120 110059145 -14017027 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1424 1173 75 0 0 chr9 110059145 110059292 -14016880 - B1_Mus2 SINE Alu 0 147 1 2 1424 428 309 157 0 chr9 110059294 110059472 -14016700 - B3 SINE B2 -5 211 6 2 1424 225 382 13 13 chr9 110059573 110059650 -14016522 + B2_Mm1t SINE B2 28 104 -89 2 1424 886 129 7 41 chr9 110059961 110060107 -14016065 - B1_Mur4 SINE Alu -1 149 9 2 1424 260 180 71 82 chr9 110060467 110060565 -14015607 + PB1D7 SINE Alu 1 120 0 2 1424 440 235 178 23 chr9 110061020 110061194 -14014978 + B3 SINE B2 1 201 -15 2 1424 2761 186 115 14 chr9 110061222 110061855 -14014317 - RMER1B Other Other -5 1061 365 2 1424 259 306 58 48 chr9 110062100 110062203 -14013969 - PB1D10 SINE Alu 0 117 14 2 1424 383 235 24 12 chr9 110062412 110062494 -14013678 - PB1D10 SINE Alu -7 110 28 2 1424 260 299 156 0 chr9 110062432 110062509 -14013663 - ID_B1 SINE B4 -53 171 83 2 1424 765 134 77 23 chr9 110062703 110062833 -14013339 - B1_Mus2 SINE Alu -2 145 9 2 1424 496 284 62 12 chr9 110062833 110063013 -14013159 - B3 SINE B2 -7 188 6 2 1424 1027 144 61 0 chr9 110063015 110063195 -14012977 - B2_Mm2 SINE B2 -2 193 3 2 1424 234 59 0 0 chr9 110063254 110063279 -14012893 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1424 1155 62 7 0 chr9 110063279 110063425 -14012747 - B1_Mm SINE Alu 0 147 1 2 1424 234 59 0 0 chr9 110063425 110063433 -14012739 + (T)n Simple_repeat Simple_repeat 1 8 0 2 1424 256 271 40 50 chr9 110063549 110063650 -14012522 + ORR1E LTR MaLR 7 106 -253 2 1424 973 103 29 6 chr9 110063894 110064069 -14012103 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 2 1424 288 132 364 20 chr9 110064076 110064175 -14011997 - B2_Mm2 SINE B2 -16 179 47 2 1424 731 70 50 0 chr9 110064222 110064322 -14011850 - B2_Mm1t SINE B2 -14 179 75 2 1424 698 164 28 1 chr9 110065054 110065192 -14010980 + MTC LTR MaLR 1 150 -271 2 1424 856 95 208 7 chr9 110065212 110065361 -14010811 + B2_Mm1t SINE B2 1 179 -14 2 1424 322 142 12 34 chr9 110065391 110065457 -14010715 + B2_Mm2 SINE B2 46 115 -83 2 1424 1297 200 75 11 chr9 110065470 110065738 -14010434 + MTC LTR MaLR 137 421 0 2 1424 1279 227 165 11 chr9 110065791 110066143 -14010029 - MTD LTR MaLR 0 419 14 2 1424 186 43 0 0 chr9 110066528 110066551 -14009621 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1424 1015 157 0 6 chr9 110066553 110066720 -14009452 - B2_Mm2 SINE B2 -29 166 1 2 1424 337 286 72 36 chr9 110067039 110067177 -14008995 - RSINE1 SINE B4 0 165 23 2 1424 36 23 0 0 chr9 110067189 110067232 -14008940 + AT_rich Low_complexity Low_complexity 1 43 0 2 1424 568 222 40 0 chr9 110067414 110067540 -14008632 + B1_Mm SINE Alu 2 132 -15 2 1424 276 177 14 101 chr9 110067555 110067624 -14008548 + B3 SINE B2 148 210 -6 2 1424 799 169 35 7 chr9 110068093 110068236 -14007936 - B1_Mur4 SINE Alu 0 150 4 2 1424 975 130 112 6 chr9 110068331 110068501 -14007671 - B2_Mm2 SINE B2 -7 188 1 2 1424 261 0 0 0 chr9 110068530 110068559 -14007613 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1424 1140 68 0 7 chr9 110068559 110068698 -14007474 - B1_Mus1 SINE Alu -8 140 2 2 1424 775 185 15 0 chr9 110068806 110068941 -14007231 + B1_Mur3 SINE Alu 13 149 0 2 1424 293 326 19 58 chr9 110068807 110068963 -14007209 + B4A SINE B4 99 248 -44 2 1424 547 198 23 23 chr9 110069289 110069418 -14006754 + B1_Mur1 SINE Alu 20 148 -1 2 1424 326 286 48 0 chr9 110069571 110069676 -14006496 + RMER15 LTR ERVL 423 532 -43 2 1424 1669 26 0 0 chr9 110069680 110069872 -14006300 - B2_Mm1t SINE B2 0 193 2 2 1424 221 197 180 0 chr9 110070523 110070584 -14005588 - B3 SINE B2 -143 73 2 2 1424 332 304 46 46 chr9 110070590 110070721 -14005451 - B3 SINE B2 0 198 68 2 1424 729 180 14 28 chr9 110071114 110071257 -14004915 + B1_Mur1 SINE Alu 9 149 0 2 1424 1575 31 0 15 chr9 110071270 110071465 -14004707 - B2_Mm1a SINE B2 0 193 2 2 1424 225 255 54 125 chr9 110071664 110071714 -14004458 - B1F1 SINE Alu -45 104 56 2 1424 1225 54 0 0 chr9 110071714 110071862 -14004310 - B1_Mus1 SINE Alu 0 148 1 2 1424 225 255 54 125 chr9 110071862 110071923 -14004249 - B1F1 SINE Alu -94 55 1 2 1424 1046 94 134 6 chr9 110072044 110072215 -14003957 - B2_Mm1t SINE B2 0 193 1 2 1424 46 16 0 16 chr9 110072268 110072293 -14003879 + AT_rich Low_complexity Low_complexity 1 25 0 2 1424 1535 48 0 0 chr9 110072293 110072479 -14003693 - B2_Mm1t SINE B2 -6 187 2 2 1424 46 16 0 16 chr9 110072479 110072517 -14003655 + AT_rich Low_complexity Low_complexity 1 38 0 2 1424 915 69 122 0 chr9 110072519 110072650 -14003522 + B1_Mus2 SINE Alu 1 147 0 2 1424 378 0 0 0 chr9 110072662 110072704 -14003468 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1424 445 172 25 8 chr9 110072709 110072818 -14003354 - B1_Mus2 SINE Alu -1 146 5 2 1424 590 177 57 167 chr9 110073067 110073277 -14002895 - URR1B DNA MER1_type -30 195 9 2 1424 795 114 0 44 chr9 110073634 110073771 -14002401 + B2_Mm2 SINE B2 65 195 0 2 1424 195 42 0 0 chr9 110074301 110074325 -14001847 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1424 425 134 207 0 chr9 110074327 110074409 -14001763 - B1_Mm SINE Alu -7 140 42 2 1424 447 242 0 0 chr9 110074454 110074632 -14001540 + CT-rich Low_complexity Low_complexity 2 179 0 2 1424 375 128 43 65 chr9 110074632 110074724 -14001448 + (TCTCTG)n Simple_repeat Simple_repeat 2 91 0 2 1424 220 179 0 25 chr9 110074727 110074767 -14001405 - B1F2 SINE Alu -91 58 20 2 1424 225 154 0 0 chr9 110074801 110074840 -14001332 + CT-rich Low_complexity Low_complexity 2 40 0 2 1424 374 219 228 0 chr9 110074899 110075013 -14001159 - B1_Mur4 SINE Alu -9 141 2 3 1424 313 180 167 11 chr9 110075024 110075114 -14001058 - B1_Mur2 SINE Alu 0 149 46 3 1424 633 274 167 16 chr9 110075120 110075365 -14000807 + MTD LTR MaLR 30 311 -108 3 1424 495 228 26 65 chr9 110075399 110075554 -14000618 - B1F2 SINE Alu 0 149 1 3 1424 225 0 0 0 chr9 110075706 110075731 -14000441 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 1424 237 182 45 0 chr9 110075754 110075798 -14000374 + polypyrimidine Low_complexity Low_complexity 4 49 0 3 1424 1113 74 0 39 chr9 110075800 110075954 -14000218 - B1_Mus1 SINE Alu 0 148 1 3 1424 614 217 7 61 chr9 110076603 110076750 -13999422 - B1_Mur2 SINE Alu -6 143 5 3 1424 277 333 0 20 chr9 110077324 110077422 -13998750 - B3A SINE B2 -1 197 102 3 1424 1558 26 0 30 chr9 110078637 110078837 -13997335 + L1Md_F3 LINE L1 6377 6570 -14 3 1424 288 263 215 25 chr9 110078937 110079058 -13997114 - B1F2 SINE Alu -1 148 5 3 1424 569 161 176 8 chr9 110079090 110079215 -13996957 - B1_Mus2 SINE Alu -1 146 1 3 1424 251 297 31 0 chr9 110079221 110079285 -13996887 - B3 SINE B2 -150 66 1 3 1424 263 341 47 0 chr9 110079374 110079459 -13996713 - PB1D10 SINE Alu -23 94 6 3 1424 1145 64 0 0 chr9 110079545 110079685 -13996487 + B1_Mus1 SINE Alu 1 140 -8 3 1424 316 337 20 0 chr9 110080066 110080164 -13996008 - ID_B1 SINE B4 -12 212 113 3 1424 184 104 0 59 chr9 110080293 110080344 -13995828 + T-rich Low_complexity Low_complexity 2 49 0 3 1424 594 217 40 34 chr9 110080591 110080739 -13995433 - B1_Mur4 SINE Alu 0 150 2 3 1424 219 240 0 20 chr9 110081163 110081214 -13994958 - PB1D9 SINE Alu -69 51 2 3 1424 693 163 49 0 chr9 110081391 110081514 -13994658 - B1_Mur2 SINE Alu 0 149 21 3 1424 257 211 0 90 chr9 110081674 110081752 -13994420 + B1_Mm SINE Alu 72 142 -5 3 1424 345 353 0 19 chr9 110081858 110081962 -13994210 - RSINE1 SINE B4 -6 159 58 3 1424 21 0 0 0 chr9 110081962 110081983 -13994189 + AT_rich Low_complexity Low_complexity 1 21 0 3 1424 1111 50 43 0 chr9 110081983 110082123 -13994049 - B1_Mus2 SINE Alu 0 147 2 3 1424 438 53 0 0 chr9 110082369 110082426 -13993746 + (TATG)n Simple_repeat Simple_repeat 4 60 0 3 1424 972 116 54 0 chr9 110082426 110082573 -13993599 - B2_Mm2 SINE B2 -40 155 1 3 1424 1187 121 11 0 chr9 110082579 110082761 -13993411 - B2_Mm1t SINE B2 -8 185 2 3 1424 353 100 0 62 chr9 110082769 110082786 -13993386 - B2_Mm1a SINE B2 -19 174 161 3 1424 279 0 0 0 chr9 110082786 110082817 -13993355 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 1424 529 56 441 24 chr9 110082817 110082928 -13993244 - B2_Mm1t SINE B2 -33 160 1 3 1424 475 124 0 33 chr9 110082933 110083025 -13993147 + CT-rich Low_complexity Low_complexity 3 91 0 3 1424 519 259 13 71 chr9 110083025 110083179 -13992993 - B1_Mur4 SINE Alu 0 150 6 3 1424 218 263 165 82 chr9 110083194 110083222 -13992950 - B2_Mm2 SINE B2 -10 185 2 3 1424 387 268 162 28 chr9 110083222 110083364 -13992808 - RSINE1 SINE B4 -2 163 3 3 1424 262 338 84 77 chr9 110083532 110083817 -13992355 + B4A SINE B4 2 288 -4 3 1424 284 298 116 11 chr9 110083930 110084025 -13992147 - PB1D9 SINE Alu -15 105 1 3 1424 474 286 2 10 chr9 110084528 110084655 -13991517 - B1_Mm SINE Alu -18 131 5 3 1424 245 294 16 128 chr9 110084556 110084681 -13991491 - MT2B LTR ERVL -344 257 147 3 1424 430 228 0 21 chr9 110084973 110085067 -13991105 + B3 SINE B2 2 93 -123 3 1424 538 176 238 20 chr9 110085723 110085874 -13990298 + URR1A DNA MER1_type 1 184 -42 3 1424 493 209 246 18 chr9 110086436 110086608 -13989564 - B3 SINE B2 0 216 6 3 1424 262 306 93 0 chr9 110087105 110087213 -13988959 - PB1D7 SINE Alu 0 120 3 3 1424 384 272 103 8 chr9 110088933 110089059 -13987113 + B1_Mur4 SINE Alu 6 143 -7 3 1424 1399 69 32 0 chr9 110089575 110089764 -13986408 - B2_Mm2 SINE B2 0 195 1 3 1424 189 0 0 0 chr9 110090050 110090071 -13986101 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1424 378 230 239 0 chr9 110090173 110090286 -13985886 - B1_Mur3 SINE Alu -9 140 1 3 1424 307 277 151 85 chr9 110090868 110091140 -13985032 + B4 SINE B4 1 290 -2 3 1424 1173 90 90 0 chr9 110091225 110091403 -13984769 + B2_Mm2 SINE B2 2 195 0 3 1424 203 106 41 41 chr9 110091793 110091842 -13984330 + T-rich Low_complexity Low_complexity 1 49 0 3 1424 1237 20 14 0 chr9 110091842 110091988 -13984184 - B1_Mus1 SINE Alu 0 148 1 3 1424 900 106 84 26 chr9 110091999 110092154 -13984018 - B2_Mm1t SINE B2 -2 191 28 3 1424 310 244 36 12 chr9 110092338 110092421 -13983751 + L1MEf LINE L1 1792 1876 -4324 3 1424 1607 32 5 0 chr9 110092424 110092612 -13983560 + B2_Mm1t SINE B2 1 189 -4 3 1424 326 295 0 0 chr9 110093062 110093140 -13983032 - RSINE1 SINE B4 -82 83 6 3 1424 246 224 0 0 chr9 110094403 110094452 -13981720 + MLT1B LTR MaLR 298 346 -44 3 1424 359 295 80 9 chr9 110094558 110094671 -13981501 - RSINE1 SINE B4 -30 135 15 3 1424 229 307 59 34 chr9 110094697 110094815 -13981357 + B4A SINE B4 159 279 -13 3 1424 510 285 0 7 chr9 110094963 110095108 -13981064 - B1_Mm SINE Alu -2 145 2 3 1424 26 0 0 0 chr9 110095112 110095138 -13981034 + AT_rich Low_complexity Low_complexity 1 26 0 3 1424 24 85 0 0 chr9 110095189 110095248 -13980924 + AT_rich Low_complexity Low_complexity 1 59 0 3 1424 568 236 35 26 chr9 110095328 110095492 -13980680 - B3 SINE B2 -1 194 20 3 1424 1728 174 96 8 chr9 110095738 110096091 -13980081 - ORR1B1 LTR MaLR -8 386 3 3 1424 1548 37 10 10 chr9 110097047 110097240 -13978932 - B2_Mm1a SINE B2 0 193 1 3 1424 21 0 0 0 chr9 110097246 110097267 -13978905 + AT_rich Low_complexity Low_complexity 1 21 0 3 1424 1198 108 62 0 chr9 110097275 110097451 -13978721 + B2_Mm2 SINE B2 1 187 -8 3 1424 477 0 0 0 chr9 110097452 110097505 -13978667 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1424 225 196 0 0 chr9 110097718 110097764 -13978408 + CT-rich Low_complexity Low_complexity 4 49 0 3 1424 24 67 0 0 chr9 110098020 110098065 -13978107 + AT_rich Low_complexity Low_complexity 1 45 0 3 1424 186 43 0 0 chr9 110098113 110098136 -13978036 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1424 1216 22 0 0 chr9 110098136 110098274 -13977898 - B1_Mus2 SINE Alu -9 138 1 3 1424 255 280 26 3 chr9 110098493 110098571 -13977601 + B1F SINE Alu 42 149 0 3 1424 291 311 38 19 chr9 110099558 110099663 -13976509 + PB1D10 SINE Alu 1 107 -10 3 1424 26 64 0 0 chr9 110099777 110099824 -13976348 + AT_rich Low_complexity Low_complexity 1 47 0 3 1425 568 282 87 33 chr9 110100869 110101052 -13975120 - B3A SINE B2 0 198 6 3 1425 280 253 70 0 chr9 110101482 110101568 -13974604 + B1_Mus2 SINE Alu 25 117 -32 3 1425 414 236 17 52 chr9 110101659 110101775 -13974397 - PB1D9 SINE Alu -8 112 1 3 1425 580 297 28 6 chr9 110102832 110103008 -13973164 - B3 SINE B2 -5 211 32 3 1425 602 234 27 14 chr9 110103311 110103458 -13972714 + B1_Mur1 SINE Alu 1 149 0 3 1425 295 336 40 59 chr9 110103327 110103479 -13972693 + B4A SINE B4 102 250 -42 3 1425 592 167 39 0 chr9 110103953 110104055 -13972117 + B1_Mur3 SINE Alu 44 149 0 3 1425 243 0 0 0 chr9 110104080 110104107 -13972065 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1425 645 251 55 0 chr9 110105234 110105397 -13970775 - B3 SINE B2 -44 172 1 3 1425 3035 59 20 10 chr9 110105745 110106141 -13970031 - MTB LTR MaLR 0 400 1 3 1425 1065 78 7 0 chr9 110107014 110107155 -13969017 + B1_Mus2 SINE Alu 1 142 -5 3 1425 648 271 15 60 chr9 110107255 110107455 -13968717 - B3 SINE B2 -6 210 20 3 1425 518 311 0 0 chr9 110107475 110107607 -13968565 - ID_B1 SINE B4 -5 219 88 3 1425 751 136 45 35 chr9 110109668 110109815 -13966357 - B1_Mus1 SINE Alu 0 148 1 3 1425 300 189 19 0 chr9 110109870 110109923 -13966249 - B1_Mus2 SINE Alu -92 55 2 3 1425 261 216 307 0 chr9 110110102 110110190 -13965982 - PB1D9 SINE Alu -3 117 3 3 1425 474 88 0 0 chr9 110110491 110110559 -13965613 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1425 365 313 43 29 chr9 110110560 110110698 -13965474 - B3A SINE B2 -50 148 9 3 1425 670 276 60 25 chr9 110110720 110110921 -13965251 - B3 SINE B2 0 216 9 3 1425 300 339 73 24 chr9 110111062 110111186 -13964986 - RSINE1 SINE B4 -33 132 3 3 1425 251 243 122 0 chr9 110111335 110111409 -13964763 - B1_Mus2 SINE Alu -64 83 1 3 1425 215 275 95 68 chr9 110111359 110111433 -13964739 - ID_B1 SINE B4 -94 130 55 3 1425 22 56 0 0 chr9 110111985 110112021 -13964151 + AT_rich Low_complexity Low_complexity 1 36 0 3 1425 270 30 0 0 chr9 110112589 110112622 -13963550 - U2 snRNA snRNA -155 33 1 3 1425 243 0 0 0 chr9 110112787 110112814 -13963358 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1425 192 170 0 0 chr9 110112833 110112886 -13963286 + T-rich Low_complexity Low_complexity 1 53 0 3 1425 1093 65 14 0 chr9 110112888 110113027 -13963145 - B1_Mus2 SINE Alu -2 145 5 3 1425 201 121 0 0 chr9 110113558 110113591 -13962581 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 3 1425 635 303 6 28 chr9 110114000 110114180 -13961992 + B3A SINE B2 8 183 -15 3 1425 680 229 21 0 chr9 110114217 110114357 -13961815 + B1_Mus2 SINE Alu 3 145 -2 4 1425 453 248 97 0 chr9 110115006 110115119 -13961053 + B1_Mus2 SINE Alu 5 128 -19 4 1425 273 330 93 0 chr9 110115675 110115793 -13960379 - RSINE1 SINE B4 -35 130 2 4 1425 470 47 16 0 chr9 110116385 110116449 -13959723 - B1_Mus2 SINE Alu -1 146 82 4 1425 234 262 103 35 chr9 110116449 110116472 -13959700 - ID_B1 SINE B4 -2 222 130 4 1425 211 317 156 31 chr9 110117402 110117594 -13958578 - L2 LINE L2 -613 2806 2591 4 1425 192 77 0 0 chr9 110117652 110117678 -13958494 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 4 1425 769 239 33 24 chr9 110117689 110117899 -13958273 - B3 SINE B2 -4 212 1 4 1425 960 111 35 7 chr9 110118034 110118179 -13957993 - B1_Mur4 SINE Alu -1 149 1 4 1425 439 271 16 24 chr9 110118735 110118860 -13957312 + ID_B1 SINE B4 100 223 -1 4 1425 246 246 29 44 chr9 110118947 110119015 -13957157 + MurSatRep1 Unknown Unknown 186 252 -1885 4 1425 385 233 64 64 chr9 110119104 110119214 -13956958 - B1_Mur1 SINE Alu 0 149 40 4 1425 618 152 0 10 chr9 110119627 110119727 -13956445 + B1_Mur3 SINE Alu 34 132 -17 4 1425 35 0 0 0 chr9 110119825 110119860 -13956312 + AT_rich Low_complexity Low_complexity 1 35 0 4 1425 309 229 54 0 chr9 110119925 110120024 -13956148 - L1MB7 LINE L1 -183 5997 5888 4 1425 234 0 0 0 chr9 110120398 110120424 -13955748 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1425 431 299 65 6 chr9 110120659 110120912 -13955260 - L1_Mur3 LINE L1 -482 5818 5500 4 1425 578 205 35 27 chr9 110120967 110121108 -13955064 - B1_Mus2 SINE Alu -1 148 7 4 1425 388 330 8 25 chr9 110121133 110121254 -13954918 - PB1D7 SINE Alu 0 120 2 4 1425 274 286 134 64 chr9 110121271 110121301 -13954871 - MT2B LTR ERVL -264 337 243 4 1425 366 218 131 95 chr9 110121301 110121438 -13954734 - B1_Mur1 SINE Alu -7 142 1 4 1425 274 286 134 64 chr9 110121438 110121473 -13954699 - MT2B LTR ERVL -264 242 122 4 1425 1368 67 39 0 chr9 110121474 110121653 -13954519 - B2_Mm1a SINE B2 -7 186 1 4 1425 369 0 0 0 chr9 110122449 110122490 -13953682 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 4 1425 260 53 26 0 chr9 110122622 110122660 -13953512 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1425 1389 77 22 0 chr9 110122665 110122846 -13953326 - B2_Mm2 SINE B2 -10 185 1 4 1425 1482 53 15 26 chr9 110122849 110123044 -13953128 - B2_Mm2 SINE B2 -2 193 1 4 1425 1211 106 6 0 chr9 110123430 110123600 -13952572 + B2_Mm2 SINE B2 2 172 -23 4 1425 1328 88 16 6 chr9 110123601 110123784 -13952388 - B2_Mm2 SINE B2 -10 185 1 4 1425 402 203 0 0 chr9 110123846 110123910 -13952262 + PB1D9 SINE Alu 1 64 -56 4 1425 375 309 36 0 chr9 110123974 110124084 -13952088 + PB1 SINE Alu 3 116 -11 4 1425 256 343 39 0 chr9 110124916 110125018 -13951154 + PB1D9 SINE Alu 2 107 -13 4 1425 22 35 0 0 chr9 110125519 110125548 -13950624 + AT_rich Low_complexity Low_complexity 1 29 0 4 1425 719 188 57 14 chr9 110125556 110125696 -13950476 + B1_Mm SINE Alu 1 146 -1 4 1425 384 131 0 32 chr9 110125697 110125760 -13950412 + B3 SINE B2 1 61 -155 4 1425 302 349 77 44 chr9 110126921 110127194 -13948978 - L1M5 LINE L1 -352 5821 5540 4 1425 246 360 25 42 chr9 110127421 110127540 -13948632 + PB1D10 SINE Alu 1 117 0 4 1425 724 164 17 0 chr9 110127550 110127666 -13948506 + B1_Mus2 SINE Alu 10 127 -20 4 1425 1140 107 0 35 chr9 110127702 110127876 -13948296 + B2_Mm2 SINE B2 2 169 -26 4 1425 1159 51 0 0 chr9 110127905 110128042 -13948130 - B1_Mus2 SINE Alu -10 137 1 4 1425 216 0 0 0 chr9 110128063 110128087 -13948085 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1425 354 230 27 0 chr9 110128095 110128169 -13948003 + B1F2 SINE Alu 13 88 -61 4 1425 271 301 0 14 chr9 110128278 110128352 -13947820 - PB1D9 SINE Alu -1 119 47 4 1425 540 0 0 0 chr9 110128378 110128438 -13947734 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1425 996 90 52 0 chr9 110128439 110128573 -13947599 - B1_Mus2 SINE Alu -6 141 1 4 1425 938 260 64 12 chr9 110128663 110128912 -13947260 + MTD LTR MaLR 1 262 -157 4 1425 1293 101 6 0 chr9 110129078 110129257 -13946915 + B2_Mm1t SINE B2 13 192 -1 4 1425 297 200 50 0 chr9 110129323 110129383 -13946789 + B1F1 SINE Alu 76 138 -11 4 1425 267 277 19 56 chr9 110129747 110129854 -13946318 + B4A SINE B4 104 206 -86 4 1425 271 220 17 0 chr9 110129935 110129994 -13946178 + ID_B1 SINE B4 85 144 -80 4 1425 584 174 203 48 chr9 110130240 110130427 -13945745 - B3 SINE B2 0 216 1 4 1425 457 250 87 52 chr9 110130458 110130631 -13945541 - B3A SINE B2 -18 180 2 4 1425 1169 49 28 0 chr9 110130704 110130848 -13945324 + B1_Mus1 SINE Alu 1 148 0 4 1425 838 169 220 0 chr9 110130911 110131088 -13945084 + B3 SINE B2 1 216 0 4 1425 270 300 67 0 chr9 110131237 110131327 -13944845 - RSINE1 SINE B4 -67 98 3 4 1425 311 278 183 38 chr9 110131833 110131964 -13944208 - B3A SINE B2 -47 151 2 4 1425 182 91 0 29 chr9 110132629 110132663 -13943509 + (TCC)n Simple_repeat Simple_repeat 1 33 0 4 1425 360 0 0 0 chr9 110132679 110132719 -13943453 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1425 451 289 51 13 chr9 110132983 110133141 -13943031 + B4A SINE B4 1 164 -128 4 1425 183 226 113 0 chr9 110133430 110133483 -13942689 + MIR SINE MIR 177 235 -27 4 1425 448 291 96 58 chr9 110133561 110133769 -13942403 + ID_B1 SINE B4 2 217 -7 4 1425 234 0 0 0 chr9 110134034 110134060 -13942112 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1425 594 218 191 48 chr9 110134093 110134281 -13941891 + B3 SINE B2 1 215 -1 4 1425 484 286 21 32 chr9 110134395 110134549 -13941623 + B1_Mur1 SINE Alu 5 147 -2 4 1425 328 262 82 27 chr9 110134713 110134823 -13941349 + PB1D10 SINE Alu 1 116 -1 4 1425 1185 68 80 0 chr9 110134875 110135051 -13941121 + B2_Mm2 SINE B2 2 191 -4 4 1425 515 234 161 20 chr9 110135071 110135341 -13940831 - MTD LTR MaLR -1 418 59 4 1425 1164 48 7 14 chr9 110135596 110135744 -13940428 - B1_Mus2 SINE Alu 0 147 1 4 1425 303 336 101 18 chr9 110136531 110136640 -13939532 - ID_B1 SINE B4 -7 217 100 4 1425 1259 84 5 27 chr9 110136760 110136785 -13939387 - B2_Mm2 SINE B2 -14 181 159 4 1425 207 0 0 0 chr9 110136785 110136808 -13939364 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 1425 1259 84 5 27 chr9 110136808 110136966 -13939206 - B2_Mm2 SINE B2 -37 158 2 4 1425 417 211 144 0 chr9 110137904 110138008 -13938164 + B1_Mur1 SINE Alu 14 132 -17 4 1425 523 156 22 0 chr9 110138445 110138535 -13937637 + PB1D9 SINE Alu 29 120 0 4 1425 351 300 21 6 chr9 110138634 110138747 -13937425 + MTE2b LTR MaLR 220 330 -49 4 1425 429 20 0 0 chr9 110138803 110138853 -13937319 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1425 688 243 37 0 chr9 110140095 110140231 -13935941 + B1_Mur1 SINE Alu 9 149 0 4 1425 333 0 0 0 chr9 110141791 110141828 -13934344 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 4 1425 216 154 0 0 chr9 110142517 110142569 -13933603 + T-rich Low_complexity Low_complexity 1 52 0 4 1425 573 237 72 22 chr9 110142926 110143064 -13933108 + RSINE1 SINE B4 19 163 -2 4 1425 592 250 43 22 chr9 110143079 110143218 -13932954 - B1_Mur1 SINE Alu -7 142 1 4 1425 239 180 100 0 chr9 110143701 110143751 -13932421 + PB1D9 SINE Alu 44 98 -22 4 1425 283 255 127 36 chr9 110143823 110143933 -13932239 + PB1D9 SINE Alu 1 120 0 4 1425 342 178 198 11 chr9 110144025 110144116 -13932056 + PB1D9 SINE Alu 2 109 -11 4 1425 685 67 0 11 chr9 110144269 110144360 -13931812 + 4.5SRNA scRNA scRNA 1 90 -4 4 1425 247 250 0 0 chr9 110144693 110144749 -13931423 - ID_B1 SINE B4 -54 170 115 4 1425 250 339 89 59 chr9 110145164 110145178 -13930994 + B1_Mur3 SINE Alu 1 139 -10 4 1425 358 322 50 0 chr9 110145178 110145299 -13930873 + ID_B1 SINE B4 88 214 -10 4 1425 384 321 84 0 chr9 110145422 110145553 -13930619 + B3 SINE B2 70 211 -5 4 1425 306 0 0 0 chr9 110146139 110146173 -13929999 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 4 1425 291 270 33 22 chr9 110146184 110146275 -13929897 + ID4 SINE ID 1 92 -60 4 1425 349 287 0 105 chr9 110146438 110146543 -13929629 - ID_B1 SINE B4 -111 113 20 4 1425 295 205 29 43 chr9 110147846 110147984 -13928188 + (CGG)n Simple_repeat Simple_repeat 1 136 0 4 1425 180 111 0 0 chr9 110149528 110149555 -13926617 + (GGA)n Simple_repeat Simple_repeat 1 27 0 4 1425 271 343 18 18 chr9 110149997 110150016 -13926156 + ID SINE ID 63 81 -143 4 1425 387 223 133 19 chr9 110150016 110150121 -13926051 + PB1D10 SINE Alu 1 117 0 4 1425 318 26 0 0 chr9 110150695 110150734 -13925438 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1425 1082 60 0 7 chr9 110150735 110150870 -13925302 - B1_Mus1 SINE Alu -13 135 2 4 1425 784 162 14 22 chr9 110150971 110151110 -13925062 - B1_Mus2 SINE Alu 0 147 10 4 1425 1378 65 37 5 chr9 110151136 110151323 -13924849 - B2_Mm2 SINE B2 -2 193 1 4 1425 420 208 65 161 chr9 110151347 110151502 -13924670 - B1_Mur1 SINE Alu -8 141 2 4 1425 485 259 27 0 chr9 110151511 110151623 -13924549 - PB1D10 SINE Alu -2 115 1 4 1425 538 319 0 0 chr9 110151834 110151969 -13924203 + ID_B1 SINE B4 86 220 -4 4 1425 542 261 63 35 chr9 110154127 110154270 -13921902 + ID_B1 SINE B4 61 207 -17 5 1425 2861 46 2 141 chr9 110154581 110155034 -13921138 - RLTR10 LTR ERVK 0 390 1 5 1425 9164 13 0 1 chr9 110155034 110156030 -13920142 - RLTR10-int LTR ERVK -1 1986 992 5 1425 8362 31 11 6 chr9 110156110 110157083 -13919089 - RLTR10-int LTR ERVK -999 988 11 5 1425 2861 46 2 141 chr9 110157128 110157581 -13918591 - RLTR10 LTR ERVK 0 390 1 5 1425 879 241 16 13 chr9 110158247 110158454 -13917718 + Kanga1 DNA Tc2 7 204 -766 5 1425 189 0 0 0 chr9 110159284 110159305 -13916867 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1425 413 283 37 9 chr9 110159359 110159466 -13916706 - ID_B1 SINE B4 -36 188 79 5 1425 712 119 0 9 chr9 110159622 110159732 -13916440 - B1_Mm SINE Alu -38 109 1 5 1425 428 246 0 116 chr9 110160055 110160184 -13915988 + B1F SINE Alu 35 148 -1 5 1425 201 250 0 20 chr9 110160729 110160778 -13915394 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1425 442 255 19 9 chr9 110160819 110160926 -13915246 - RSINE1 SINE B4 0 165 58 5 1425 402 270 30 10 chr9 110161554 110161655 -13914517 - PB1D10 SINE Alu -14 103 1 5 1425 527 228 89 8 chr9 110161988 110162112 -13914060 + B1F1 SINE Alu 9 142 -7 5 1425 252 0 0 0 chr9 110162129 110162157 -13914015 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1425 272 344 32 0 chr9 110162216 110162309 -13913863 + ID_B1 SINE B4 126 221 -3 5 1425 370 306 55 66 chr9 110162369 110162551 -13913621 + B4A SINE B4 103 282 -10 5 1425 276 271 45 136 chr9 110162571 110162725 -13913447 + MT2B LTR ERVL 125 264 -337 5 1425 681 136 30 53 chr9 110162628 110162760 -13913412 + B1_Mur2 SINE Alu 21 149 0 5 1425 1192 68 0 0 chr9 110162787 110162935 -13913237 + B1_Mus1 SINE Alu 1 148 0 5 1425 213 121 0 0 chr9 110162935 110162968 -13913204 + (GAA)n Simple_repeat Simple_repeat 1 33 0 5 1425 593 196 170 6 chr9 110163014 110163173 -13912999 - B3 SINE B2 -31 185 1 5 1425 584 246 51 23 chr9 110163759 110163934 -13912238 + B3A SINE B2 3 182 -16 5 1425 183 80 0 0 chr9 110164002 110164027 -13912145 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1425 429 246 103 32 chr9 110164028 110164154 -13912018 + B1_Mur1 SINE Alu 1 135 -14 5 1425 287 351 0 11 chr9 110164263 110164358 -13911814 - ID_B1 SINE B4 -20 204 111 5 1425 524 269 29 10 chr9 110165165 110165308 -13910864 + B3 SINE B2 65 210 -6 5 1425 807 127 0 124 chr9 110165327 110165480 -13910692 - B1_Mus1 SINE Alu -13 135 2 5 1425 326 202 7 241 chr9 110165359 110165496 -13910676 - MT2B LTR ERVL -344 257 153 5 1425 372 281 136 36 chr9 110165566 110165706 -13910466 - MLT1B LTR MaLR -16 374 221 5 1425 356 234 81 47 chr9 110166072 110166220 -13909952 + RMER15 LTR ERVL 405 557 -18 5 1425 362 268 118 72 chr9 110166247 110166400 -13909772 - ID_B1 SINE B4 -51 241 80 5 1425 1516 33 55 0 chr9 110166405 110166587 -13909585 - B2_Mm2 SINE B2 -2 193 2 5 1425 322 274 47 93 chr9 110166627 110166756 -13909416 - MLT1B LTR MaLR -251 123 1 5 1425 418 205 156 15 chr9 110166786 110166909 -13909263 + PB1D10 SINE Alu 1 147 -2 5 1425 1036 227 78 81 chr9 110167008 110167291 -13908881 + B4A SINE B4 7 288 -4 5 1425 350 252 0 97 chr9 110167389 110167503 -13908669 + RSINE1 SINE B4 3 105 -60 5 1425 326 276 26 53 chr9 110167672 110167804 -13908368 + B1F1 SINE Alu 14 218 -93 5 1425 237 226 41 157 chr9 110167804 110167817 -13908355 + B4A SINE B4 87 214 -78 5 1425 1427 73 15 25 chr9 110168125 110168322 -13907850 - B2_Mm2 SINE B2 0 195 1 5 1425 189 94 0 0 chr9 110168471 110168503 -13907669 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1425 271 273 26 13 chr9 110169028 110169106 -13907066 + RSINE1 SINE B4 84 162 -3 5 1425 623 217 16 16 chr9 110169169 110169291 -13906881 + B4A SINE B4 1 122 -170 5 1425 772 215 0 0 chr9 110169770 110169905 -13906267 + B1_Mur2 SINE Alu 15 149 0 5 1425 697 189 71 0 chr9 110169921 110170048 -13906124 + B1_Mus1 SINE Alu 7 142 -6 5 1425 266 143 54 0 chr9 110170052 110170108 -13906064 + GA-rich Low_complexity Low_complexity 3 61 0 5 1425 313 315 68 34 chr9 110170108 110170256 -13905916 + HAL1-3A_ME LINE L1 2288 2440 -418 5 1425 366 324 18 84 chr9 110170473 110170694 -13905478 + B4A SINE B4 96 289 -3 5 1425 712 210 5 152 chr9 110171045 110171236 -13904936 - RSINE1 SINE B4 0 165 3 5 1425 1092 202 33 19 chr9 110171324 110171536 -13904636 + ID_B1 SINE B4 1 215 -9 5 1425 1125 109 0 0 chr9 110171545 110171692 -13904480 + B1_Mm SINE Alu 1 147 0 5 1425 1374 88 11 5 chr9 110171799 110171983 -13904189 + B2_Mm2 SINE B2 1 185 -10 5 1425 755 258 30 40 chr9 110171985 110172183 -13903989 - B3A SINE B2 -2 196 1 5 1425 623 125 0 0 chr9 110172191 110172279 -13903893 - ORR1B1 LTR MaLR -304 90 3 5 1425 270 246 0 15 chr9 110172281 110172347 -13903825 - L1M4 LINE L1 -437 5741 5677 5 1425 215 214 53 67 chr9 110172350 110172425 -13903747 - ID SINE ID -139 85 12 5 1425 522 116 10 39 chr9 110172363 110172484 -13903688 + B1_Mur4 SINE Alu 32 149 -1 5 1425 515 243 47 13 chr9 110172575 110172725 -13903447 - L1M4 LINE L1 -581 5603 5449 5 1425 1181 65 33 71 chr9 110172840 110172856 -13903316 - B2_Mm2 SINE B2 -19 176 163 5 1425 1211 62 7 0 chr9 110172856 110173001 -13903171 - B1_Mus2 SINE Alu 0 147 2 5 1425 1181 65 33 71 chr9 110173001 110173019 -13903153 - B2_Mm2 SINE B2 -33 162 154 5 1425 180 0 0 0 chr9 110173019 110173039 -13903133 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1425 1181 65 33 71 chr9 110173039 110173185 -13902987 - B2_Mm2 SINE B2 -42 153 2 5 1425 762 220 28 14 chr9 110173339 110173482 -13902690 - B3A SINE B2 -51 147 3 5 1425 268 318 46 106 chr9 110173482 110173693 -13902479 + MT2B LTR ERVL 60 257 -344 5 1425 691 230 21 14 chr9 110173597 110173738 -13902434 + B1_Mur2 SINE Alu 8 149 0 5 1425 961 66 0 0 chr9 110173970 110174092 -13902080 + B1_Mus2 SINE Alu 26 147 0 5 1425 428 175 68 36 chr9 110174127 110174272 -13901900 + B3A SINE B2 1 216 0 5 1425 1229 68 0 0 chr9 110174369 110174516 -13901656 - B1_Mus2 SINE Alu 0 147 1 5 1425 1657 32 0 0 chr9 110174518 110174707 -13901465 - B2_Mm1a SINE B2 -4 189 1 5 1425 397 315 9 9 chr9 110174767 110174876 -13901296 - RSINE1 SINE B4 -54 111 3 5 1425 340 262 38 0 chr9 110175113 110175193 -13900979 + ID_B1 SINE B4 21 103 -121 5 1425 1141 75 0 7 chr9 110175227 110175374 -13900798 + B1_Mus2 SINE Alu 2 147 0 5 1425 619 267 22 7 chr9 110175384 110175520 -13900652 + ID_B1 SINE B4 80 217 -7 5 1425 297 0 0 0 chr9 110175537 110175570 -13900602 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1425 586 133 0 139 chr9 110175636 110175758 -13900414 - B1_Mur2 SINE Alu -13 136 32 5 1425 1128 176 25 5 chr9 110175785 110175985 -13900187 - B3 SINE B2 -10 206 3 5 1425 221 156 0 0 chr9 110176077 110176122 -13900050 - ID SINE ID -176 48 4 5 1425 347 261 113 80 chr9 110176187 110176524 -13899648 - L1MEe LINE L1 -3794 1060 713 5 1425 300 314 121 0 chr9 110176540 110176615 -13899557 + RSINE1 SINE B4 6 81 -84 5 1425 495 0 0 0 chr9 110176615 110176670 -13899502 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1425 300 314 121 0 chr9 110176670 110176718 -13899454 + RSINE1 SINE B4 82 143 -22 5 1425 746 96 51 0 chr9 110176719 110176876 -13899296 + (CAGAGA)n Simple_repeat Simple_repeat 4 168 0 5 1425 305 338 59 26 chr9 110176878 110177030 -13899142 + HAL1-3A_ME LINE L1 2284 2440 -418 5 1425 1411 61 38 16 chr9 110177034 110177217 -13898955 - B2_Mm2 SINE B2 -8 187 1 5 1425 993 223 24 5 chr9 110177444 110177656 -13898516 - ID_B1 SINE B4 -7 217 2 5 1425 268 294 51 68 chr9 110177660 110177709 -13898463 + MER3 DNA MER1_type 89 132 -77 5 1425 300 307 8 42 chr9 110177709 110177828 -13898344 - PB1D10 SINE Alu -1 116 2 5 1425 268 294 51 68 chr9 110177828 110177895 -13898277 + MER3 DNA MER1_type 133 203 -6 5 1425 1159 68 0 0 chr9 110178003 110178150 -13898022 - B1_Mus1 SINE Alu 0 148 2 5 1425 244 287 158 6 chr9 110178192 110178235 -13897937 - B2_Mm1t SINE B2 -9 184 7 5 1425 498 207 153 0 chr9 110178235 110178346 -13897826 - RSINE1 SINE B4 -29 136 9 5 1425 1044 177 23 0 chr9 110178545 110178720 -13897452 - B3 SINE B2 -29 187 9 5 1425 961 291 51 4 chr9 110178825 110179098 -13897074 - B4A SINE B4 -6 286 1 5 1425 194 351 52 17 chr9 110179135 110179251 -13896921 - MIR SINE MIR -1 261 142 5 1425 234 330 41 33 chr9 110179251 110179373 -13896799 - RLTR19A LTR ERVK -149 347 225 5 1425 732 256 104 5 chr9 110179369 110179561 -13896611 + ID_B1 SINE B4 6 216 -8 5 1425 1270 5 0 36 chr9 110180864 110181089 -13895083 + (TG)n Simple_repeat Simple_repeat 1 216 0 5 1425 445 306 84 58 chr9 110181089 110181116 -13895056 - B3A SINE B2 -2 196 177 5 1425 998 220 117 182 chr9 110181116 110181322 -13894850 - MTD LTR MaLR 0 419 211 5 1425 1100 109 121 0 chr9 110181322 110181496 -13894676 - B2_Mm2 SINE B2 0 195 1 5 1425 998 220 117 182 chr9 110181496 110181621 -13894551 - MTD LTR MaLR -209 210 111 5 1425 750 165 70 28 chr9 110181621 110181764 -13894408 + B1_Mur4 SINE Alu 1 149 -1 5 1425 998 220 117 182 chr9 110181764 110181876 -13894296 - MTD LTR MaLR -309 110 4 5 1425 445 306 84 58 chr9 110181876 110182039 -13894133 - B3A SINE B2 -22 176 1 5 1425 1206 82 0 0 chr9 110182861 110183008 -13893164 + B1_Mm SINE Alu 1 147 0 5 1425 3338 194 131 14 chr9 110183041 110183750 -13892422 + RMER19B LTR ERVK 88 879 -23 5 1425 950 92 49 0 chr9 110183750 110183892 -13892280 + LSU-rRNA_Hsa rRNA rRNA 1957 2105 -2930 5 1425 461 239 0 0 chr9 110184844 110184953 -13891219 - RLTR19-int LTR ERVK -6003 134 26 5 1425 1570 219 77 131 chr9 110184963 110185296 -13890876 - RLTR19 LTR ERVK -6 493 166 5 1425 772 206 206 0 chr9 110185296 110185466 -13890706 + B3 SINE B2 3 207 -9 5 1425 1570 219 77 131 chr9 110185466 110185653 -13890519 - RLTR19 LTR ERVK -334 165 1 5 1425 926 152 14 7 chr9 110185841 110185987 -13890185 - B1_Mus1 SINE Alu -1 147 1 5 1425 315 84 0 66 chr9 110185994 110186051 -13890121 + T-rich Low_complexity Low_complexity 19 73 0 5 1425 1065 103 21 0 chr9 110186051 110186196 -13889976 - B1_Mus1 SINE Alu 0 148 1 5 1425 315 84 0 66 chr9 110186196 110186214 -13889958 + T-rich Low_complexity Low_complexity 3 18 0 5 1425 1389 88 5 10 chr9 110186253 110186448 -13889724 - B2_Mm2 SINE B2 0 195 2 6 1425 737 245 0 20 chr9 110186448 110186598 -13889574 - B1_Mur1 SINE Alu -2 147 1 6 1425 526 270 0 0 chr9 110186599 110186710 -13889462 - PB1D10 SINE Alu -6 111 1 6 1425 2828 162 32 24 chr9 110186935 110186982 -13889190 - RLTR19 LTR ERVK 0 499 459 6 1425 1838 205 66 74 chr9 110186982 110187050 -13889122 + RLTR31_Mur LTR ERVK 1 81 -472 6 1425 1690 21 0 15 chr9 110187050 110187245 -13888927 + B2_Mm1a SINE B2 2 193 0 6 1425 1838 205 66 74 chr9 110187245 110187733 -13888439 + RLTR31_Mur LTR ERVK 82 553 0 6 1425 2828 162 32 24 chr9 110187733 110187859 -13888313 - RLTR19 LTR ERVK -41 458 328 6 1425 307 0 47 0 chr9 110187859 110187902 -13888270 + (CCCCCA)n Simple_repeat Simple_repeat 3 47 0 6 1425 2828 162 32 24 chr9 110187902 110188220 -13887952 - RLTR19 LTR ERVK -172 327 4 6 1425 1113 67 0 0 chr9 110188553 110188687 -13887485 + B1_Mus1 SINE Alu 2 135 -13 6 1425 312 27 0 0 chr9 110188687 110188724 -13887448 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 6 1425 547 279 8 37 chr9 110188936 110189070 -13887102 - ID_B1 SINE B4 0 224 95 6 1425 261 139 0 0 chr9 110189079 110189122 -13887050 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 6 1425 1043 70 0 128 chr9 110189122 110189286 -13886886 - B1_Mus2 SINE Alu 0 147 5 6 1425 1240 54 0 0 chr9 110190763 110190910 -13885262 - B1_Mus2 SINE Alu 0 147 1 6 1425 489 106 59 0 chr9 110190910 110190995 -13885177 - B2_Mm2 SINE B2 -5 190 101 6 1425 207 0 0 0 chr9 110191005 110191028 -13885144 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1425 1198 70 13 0 chr9 110191028 110191186 -13884986 - B2_Mm1a SINE B2 -33 160 1 6 1425 1340 76 16 26 chr9 110191194 110191383 -13884789 - B2_Mm2 SINE B2 -7 188 2 6 1425 371 286 20 10 chr9 110192167 110192266 -13883906 + PB1D10 SINE Alu 13 112 -5 6 1425 284 220 0 29 chr9 110192506 110192609 -13883563 + T-rich Low_complexity Low_complexity 1 100 0 6 1425 216 0 0 0 chr9 110192611 110192635 -13883537 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1425 1167 71 0 0 chr9 110192638 110192778 -13883394 - B1_Mus2 SINE Alu -7 140 1 6 1425 808 133 7 7 chr9 110192778 110192922 -13883250 + (TTCC)n Simple_repeat Simple_repeat 4 147 0 6 1425 857 176 0 45 chr9 110192931 110193086 -13883086 - B1_Mur3 SINE Alu -1 148 1 6 1425 211 200 0 0 chr9 110193123 110193158 -13883014 + B3 SINE B2 1 35 -181 6 1425 1297 103 11 0 chr9 110193224 110193409 -13882763 - B2_Mm1t SINE B2 -6 187 1 6 1425 736 200 56 14 chr9 110193433 110193575 -13882597 - B1_Mur1 SINE Alu -1 148 1 6 1425 627 195 43 55 chr9 110193613 110193776 -13882396 + B4 SINE B4 65 225 -67 6 1425 24 0 0 0 chr9 110193903 110193927 -13882245 + AT_rich Low_complexity Low_complexity 1 24 0 6 1425 1265 71 5 42 chr9 110193929 110194087 -13882085 + B2_Mm2 SINE B2 1 158 -37 6 1425 315 0 0 0 chr9 110194087 110194122 -13882050 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1425 1265 71 5 42 chr9 110194122 110194154 -13882018 + B2_Mm2 SINE B2 159 184 -11 6 1425 957 159 0 0 chr9 110194230 110194375 -13881797 + B1_Mur1 SINE Alu 5 149 0 6 1425 1187 68 0 13 chr9 110194465 110194615 -13881557 + B1_Mus1 SINE Alu 1 148 0 6 1425 387 0 0 0 chr9 110194616 110194659 -13881513 + (TAA)n Simple_repeat Simple_repeat 1 43 0 6 1425 1067 159 87 0 chr9 110194691 110194898 -13881274 + URR1A DNA MER1_type 2 226 0 6 1425 465 333 126 0 chr9 110194926 110195124 -13881048 - ID_B1 SINE B4 0 224 2 6 1425 681 168 29 21 chr9 110195158 110195298 -13880874 + B2_Mm2 SINE B2 41 181 -14 6 1425 414 261 200 10 chr9 110196734 110196924 -13879248 + B4 SINE B4 3 228 -64 6 1425 720 184 0 46 chr9 110196912 110197043 -13879129 + RSINE1 SINE B4 6 130 -35 6 1425 1274 28 0 0 chr9 110197122 110197267 -13878905 + B1_Mm SINE Alu 2 146 -1 6 1425 442 0 35 0 chr9 110197267 110197325 -13878847 + (TAAAA)n Simple_repeat Simple_repeat 2 61 0 6 1425 542 265 99 42 chr9 110197369 110197392 -13878780 + RSINE1 SINE B4 3 23 -142 6 1425 1515 171 111 65 chr9 110197392 110197743 -13878429 + ORR1B2 LTR MaLR 1 367 0 6 1425 542 265 99 42 chr9 110197743 110197861 -13878311 + RSINE1 SINE B4 24 152 -13 6 1425 1684 230 91 22 chr9 110197866 110198359 -13877813 + RLTR11A2 LTR ERVK 1 527 0 6 1425 50 26 0 25 chr9 110198376 110198402 -13877770 + AT_rich Low_complexity Low_complexity 1 25 0 6 1425 1201 68 0 7 chr9 110198402 110198550 -13877622 + B1_Mus1 SINE Alu 2 148 0 6 1425 50 26 0 25 chr9 110198550 110198602 -13877570 + AT_rich Low_complexity Low_complexity 1 52 0 6 1425 913 131 0 7 chr9 110198907 110199045 -13877127 - B2_Mm2 SINE B2 -14 181 45 6 1425 464 263 32 124 chr9 110199122 110199316 -13876856 + B3A SINE B2 1 181 -17 6 1425 285 29 0 0 chr9 110199316 110199350 -13876822 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1425 464 263 32 124 chr9 110199350 110199372 -13876800 + B3A SINE B2 182 197 -1 6 1425 22 0 0 0 chr9 110199375 110199397 -13876775 + AT_rich Low_complexity Low_complexity 1 22 0 6 1425 1000 223 10 5 chr9 110199397 110199595 -13876577 + B3 SINE B2 1 199 -17 6 1425 312 147 0 0 chr9 110199598 110199673 -13876499 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1425 191 36 36 0 chr9 110200040 110200068 -13876104 + (CCCCCT)n Simple_repeat Simple_repeat 5 33 0 6 1425 554 228 18 0 chr9 110200086 110200200 -13875972 - B1_Mur1 SINE Alu -15 134 19 6 1425 229 271 8 69 chr9 110200217 110200257 -13875915 + T-rich Low_complexity Low_complexity 86 125 0 6 1425 1202 49 14 0 chr9 110200257 110200401 -13875771 - B1_Mus2 SINE Alu 0 147 2 6 1425 229 271 8 69 chr9 110200401 110200422 -13875750 + T-rich Low_complexity Low_complexity 72 85 0 6 1425 496 204 206 90 chr9 110200422 110200611 -13875561 - B3 SINE B2 -5 211 1 6 1425 244 224 17 0 chr9 110200611 110200685 -13875487 + (TTG)n Simple_repeat Simple_repeat 1 75 0 6 1425 721 164 80 22 chr9 110200687 110200806 -13875366 - B1_Mur3 SINE Alu 0 149 23 6 1425 414 0 0 0 chr9 110200806 110200852 -13875320 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1425 721 164 80 22 chr9 110200852 110200869 -13875303 - B1_Mur3 SINE Alu -127 22 6 6 1425 440 339 96 37 chr9 110200870 110201057 -13875115 - B3A SINE B2 0 198 1 6 1425 189 0 0 0 chr9 110201111 110201132 -13875040 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1425 618 149 207 0 chr9 110201147 110201268 -13874904 - B1_Mus1 SINE Alu 0 148 3 6 1425 299 231 200 52 chr9 110201276 110201431 -13874741 + L1MEc LINE L1 335 512 -5888 6 1425 386 309 100 86 chr9 110201417 110201532 -13874640 + L1MEc LINE L1 4142 4239 -2080 6 1425 1222 54 0 0 chr9 110201532 110201679 -13874493 + B1_Mm SINE Alu 1 147 0 6 1425 386 309 100 86 chr9 110201679 110201914 -13874258 + L1MEc LINE L1 4240 4497 -1822 6 1425 552 316 6 6 chr9 110201991 110202150 -13874022 + RSINE1 SINE B4 2 160 -5 6 1425 291 316 45 51 chr9 110202152 110202309 -13873863 + ID_B1 SINE B4 68 223 -1 6 1425 1066 80 7 0 chr9 110202312 110202449 -13873723 + B1_Mus1 SINE Alu 1 138 -10 6 1425 266 0 0 29 chr9 110202449 110202484 -13873688 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1425 202 135 0 75 chr9 110202484 110202524 -13873648 + A-rich Low_complexity Low_complexity 4 40 0 6 1425 616 168 83 9 chr9 110202543 110202651 -13873521 + B1_Mur1 SINE Alu 26 141 -8 6 1425 225 0 0 0 chr9 110202653 110202678 -13873494 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1425 411 155 0 0 chr9 110202801 110202904 -13873268 + GA-rich Low_complexity Low_complexity 2 104 0 6 1425 422 300 33 8 chr9 110202910 110203031 -13873141 + B1F1 SINE Alu 26 149 0 6 1425 744 264 44 6 chr9 110203059 110203242 -13872930 + B3A SINE B2 3 192 -6 6 1425 320 184 67 142 chr9 110203276 110203325 -13872847 - MER90 LTR ERV1 -449 126 81 6 1425 4020 80 21 38 chr9 110203325 110203630 -13872542 + LTRIS2 LTR ERV1 1 304 -260 6 1425 1653 42 0 0 chr9 110203630 110203822 -13872350 - B2_Mm1a SINE B2 0 193 2 6 1425 4020 80 21 38 chr9 110203822 110204090 -13872082 + LTRIS2 LTR ERV1 305 564 0 6 1425 320 184 67 142 chr9 110204090 110204144 -13872028 - MER90 LTR ERV1 -495 80 28 6 1425 504 0 0 0 chr9 110204144 110204200 -13871972 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1425 320 184 67 142 chr9 110204200 110204215 -13871957 - MER90 LTR ERV1 -548 27 16 6 1425 432 207 232 32 chr9 110204224 110204349 -13871823 + B3 SINE B2 67 216 0 6 1425 542 230 93 20 chr9 110204389 110204540 -13871632 - RSINE1 SINE B4 -2 163 2 6 1425 775 174 80 0 chr9 110204589 110204727 -13871445 - B1_Mur2 SINE Alu 0 149 1 6 1425 541 258 132 100 chr9 110204728 110204857 -13871315 + LTR65 LTR ERV1 240 345 -324 6 1425 1189 55 0 7 chr9 110204857 110205005 -13871167 - B1_Mus2 SINE Alu 0 147 1 6 1425 541 258 132 100 chr9 110205005 110205125 -13871047 + LTR65 LTR ERV1 346 497 -172 6 1425 201 154 0 0 chr9 110205159 110205198 -13870974 + A-rich Low_complexity Low_complexity 2 40 0 6 1425 247 290 176 25 chr9 110205202 110205361 -13870811 + LTR65 LTR ERV1 487 669 0 6 1425 257 294 53 44 chr9 110205372 110205486 -13870686 - L2a LINE L2 -252 3174 3060 6 1425 651 232 72 0 chr9 110205557 110205695 -13870477 + B1_Mur2 SINE Alu 2 149 0 6 1425 942 220 93 0 chr9 110205695 110205877 -13870295 - B3 SINE B2 -17 199 1 6 1425 372 145 151 16 chr9 110206011 110206137 -13870035 - Lx9 LINE L1 -8 7636 7494 6 1425 643 204 69 90 chr9 110206193 110206289 -13869883 - B1_Mus1 SINE Alu 0 148 55 6 1425 1650 32 5 0 chr9 110206289 110206479 -13869693 - B2_Mm1t SINE B2 -1 192 2 6 1425 643 204 69 90 chr9 110206479 110206527 -13869645 - B1_Mus1 SINE Alu -94 54 7 6 1425 801 162 21 14 chr9 110206588 110206732 -13869440 - B1_Mm SINE Alu -2 145 1 6 1425 306 265 133 0 chr9 110206739 110206837 -13869335 - PB1D10 SINE Alu 0 117 7 6 1425 269 246 229 33 chr9 110206768 110206890 -13869282 - ID_B1 SINE B4 -71 153 8 6 1425 714 255 14 0 chr9 110206973 110207118 -13869054 - B3 SINE B2 -26 190 44 6 1425 557 219 219 0 chr9 110207136 110207291 -13868881 - B3A SINE B2 -9 189 1 6 1425 185 356 104 47 chr9 110208228 110208334 -13867838 + L2b LINE L2 3033 3144 -231 6 1425 1160 48 7 14 chr9 110208434 110208582 -13867590 - B1_Mus1 SINE Alu 0 148 2 6 1425 651 288 60 35 chr9 110209005 110209289 -13866883 + B4A SINE B4 2 292 0 6 1425 378 242 47 104 chr9 110209452 110209558 -13866614 + B1_Mur4 SINE Alu 43 142 -8 7 1425 473 209 96 43 chr9 110209604 110209719 -13866453 - B1_Mur1 SINE Alu 0 150 29 7 1425 220 264 0 0 chr9 110209732 110209785 -13866387 - PB1D10 SINE Alu -33 84 32 7 1425 315 0 0 0 chr9 110209920 110209955 -13866217 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1425 1640 32 0 0 chr9 110211030 110211218 -13864954 - B2_Mm1a SINE B2 -4 189 2 7 1425 357 317 96 57 chr9 110211221 110211398 -13864774 - B3A SINE B2 -4 194 11 7 1425 4289 47 0 6 chr9 110211369 110211909 -13864263 + MT-int LTR MaLR 461 997 -101 7 1425 407 301 98 36 chr9 110211997 110212094 -13864078 - B4A SINE B4 -86 206 108 7 1425 249 33 0 0 chr9 110212094 110212124 -13864048 + (CTTA)n Simple_repeat Simple_repeat 3 32 0 7 1425 407 301 98 36 chr9 110212124 110212219 -13863953 - B4A SINE B4 -185 107 2 7 1425 776 92 0 40 chr9 110212233 110212357 -13863815 - BC1_Mm scRNA scRNA -30 122 4 7 1425 1101 62 0 0 chr9 110212357 110212487 -13863685 - B1_Mm SINE Alu -16 131 2 7 1425 665 179 0 0 chr9 110212714 110212820 -13863352 + B3 SINE B2 2 107 -109 7 1425 925 73 0 8 chr9 110212847 110212971 -13863201 + B1_Mus1 SINE Alu 1 123 -25 7 1425 185 0 40 0 chr9 110212974 110212999 -13863173 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1425 631 184 50 35 chr9 110212999 110213012 -13863160 + ID_B1 SINE B4 212 224 0 7 1425 648 256 221 0 chr9 110213438 110213610 -13862562 - ID_B1 SINE B4 -11 213 4 7 1425 226 253 55 110 chr9 110213714 110213914 -13862258 + L1M5 LINE L1 4205 4393 -1753 7 1425 824 245 146 31 chr9 110213933 110214194 -13861978 + B4A SINE B4 2 292 0 7 1425 301 28 0 0 chr9 110214207 110214243 -13861929 + HAL1-3A_ME LINE L1 1980 2015 -843 7 1425 716 245 7 13 chr9 110214249 110214402 -13861770 + RSINE1 SINE B4 2 153 -12 7 1425 242 95 0 23 chr9 110214415 110214458 -13861714 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 7 1425 529 329 14 34 chr9 110214546 110214694 -13861478 + RSINE1 SINE B4 13 157 -8 7 1425 472 345 60 69 chr9 110214720 110214938 -13861234 + ID_B1 SINE B4 6 221 -3 7 1425 1098 13 0 75 chr9 110215215 110215466 -13860706 + (TTC)n Simple_repeat Simple_repeat 1 232 0 7 1425 418 49 82 0 chr9 110215480 110215541 -13860631 - B1_Mus2 SINE Alu 0 147 82 7 1425 202 118 0 29 chr9 110215541 110215576 -13860596 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 7 1425 561 118 6 8 chr9 110215656 110215752 -13860420 - B1_Mus1 SINE Alu -22 95 1 7 1425 404 227 0 120 chr9 110215752 110215784 -13860388 - B4 SINE B4 -208 84 65 7 1425 246 238 171 24 chr9 110215942 110216012 -13860160 + PB1D7 SINE Alu 1 82 -38 7 1425 442 143 110 0 chr9 110216012 110216103 -13860069 + B3A SINE B2 1 101 -97 7 1425 343 132 40 81 chr9 110216182 110216256 -13859916 + B1_Mur3 SINE Alu 74 144 -5 7 1425 306 0 0 0 chr9 110217253 110217287 -13858885 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1425 243 0 0 0 chr9 110217764 110217791 -13858381 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1425 409 218 81 0 chr9 110217878 110217965 -13858207 + PB1D10 SINE Alu 1 94 -53 7 1425 853 229 46 10 chr9 110217992 110218186 -13857986 + ID_B1 SINE B4 24 224 0 7 1425 216 0 0 0 chr9 110218784 110218808 -13857364 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1425 1236 54 0 0 chr9 110218808 110218956 -13857216 - B1_Mus1 SINE Alu 0 148 1 7 1425 299 276 13 13 chr9 110219023 110219100 -13857072 + PB1D10 SINE Alu 1 77 -40 7 1425 425 241 35 63 chr9 110219099 110219241 -13856931 + RSINE1 SINE B4 25 162 -3 7 1425 249 119 0 0 chr9 110219452 110219494 -13856678 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 7 1425 305 169 97 106 chr9 110219506 110219616 -13856556 - B4A SINE B4 -102 190 81 7 1425 410 250 66 59 chr9 110219625 110219761 -13856411 - ID_B1 SINE B4 0 224 88 7 1425 21 0 0 0 chr9 110219784 110219805 -13856367 + AT_rich Low_complexity Low_complexity 1 21 0 7 1425 772 180 29 0 chr9 110219836 110219975 -13856197 - B1_Mur4 SINE Alu -6 144 2 7 1425 269 26 26 0 chr9 110219984 110220022 -13856150 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 7 1425 1186 57 0 0 chr9 110220024 110220164 -13856008 - B1_Mus2 SINE Alu -6 141 2 7 1425 229 195 0 0 chr9 110220181 110220222 -13855950 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1425 393 250 250 24 chr9 110220223 110220387 -13855785 - B3 SINE B2 -14 202 2 7 1425 1687 21 5 0 chr9 110220406 110220597 -13855575 - B2_Mm1a SINE B2 -1 192 1 7 1425 703 283 35 8 chr9 110220598 110220768 -13855404 - B3 SINE B2 -17 176 3 7 1425 465 216 231 8 chr9 110220794 110220911 -13855261 - B1_Mur2 SINE Alu -6 143 1 7 1425 355 253 10 87 chr9 110220911 110221015 -13855157 - B4A SINE B4 -196 96 1 7 1425 220 312 64 13 chr9 110221033 110221111 -13855061 - ID4_ SINE ID -1 82 1 7 1425 302 246 0 119 chr9 110221115 110221214 -13854958 - ID4 SINE ID -61 91 5 7 1425 884 108 97 30 chr9 110221489 110221623 -13854549 - B1_Mus1 SINE Alu -5 143 1 7 1425 1165 138 0 11 chr9 110222360 110222536 -13853636 - B2_Mm2 SINE B2 -20 175 2 7 1425 788 150 79 0 chr9 110222545 110222672 -13853500 - B1_Mus2 SINE Alu -6 141 5 7 1425 812 214 75 25 chr9 110222744 110222945 -13853227 + B3 SINE B2 2 212 -4 7 1425 285 254 0 0 chr9 110222980 110223039 -13853133 + tRNA-Ala-GCY_ tRNA tRNA 6 64 -11 7 1425 246 320 12 37 chr9 110223049 110223060 -13853112 + ID SINE ID 11 89 -135 7 1425 794 170 7 7 chr9 110224306 110224442 -13851730 - B1_Mur1 SINE Alu -10 139 4 7 1425 262 315 41 0 chr9 110224615 110224629 -13851543 - ID SINE ID -144 80 5 7 1425 264 339 0 0 chr9 110224629 110224688 -13851484 - ID4 SINE ID -20 63 5 7 1425 1216 61 0 13 chr9 110224723 110224873 -13851299 + B1_Mus1 SINE Alu 1 148 0 7 1425 561 195 143 24 chr9 110224973 110225099 -13851073 + B1_Mur1 SINE Alu 6 146 -3 7 1425 675 229 43 56 chr9 110225113 110225275 -13850897 - RSINE1 SINE B4 -4 161 2 7 1425 1650 155 49 109 chr9 110225310 110225715 -13850457 - ORR1C2 LTR MaLR -3 381 1 7 1425 437 240 4 42 chr9 110225983 110226092 -13850080 - B1F SINE Alu 0 120 13 7 1425 252 0 0 0 chr9 110226097 110226125 -13850047 + (TCC)n Simple_repeat Simple_repeat 3 30 0 7 1425 189 0 0 0 chr9 110226125 110226146 -13850026 + (CTA)n Simple_repeat Simple_repeat 2 22 0 7 1425 450 109 333 35 chr9 110226167 110226281 -13849891 - B2_Mm2 SINE B2 -1 194 47 7 1425 1213 101 6 6 chr9 110226292 110226462 -13849710 - B2_Mm1a SINE B2 -22 171 2 7 1425 347 290 109 31 chr9 110226465 110226593 -13849579 - B1F1 SINE Alu 0 149 12 7 1425 634 220 15 8 chr9 110226616 110226749 -13849423 - B1_Mur1 SINE Alu -1 148 15 7 1425 660 224 81 7 chr9 110226768 110226916 -13849256 - B3 SINE B2 -54 162 4 7 1425 620 194 112 0 chr9 110226947 110227081 -13849091 + B1_Mur1 SINE Alu 1 149 0 7 1425 655 277 15 25 chr9 110227120 110227320 -13848852 - B3A SINE B2 0 198 1 7 1425 262 208 0 0 chr9 110227320 110227368 -13848804 + L1MB8 LINE L1 5912 5959 -219 7 1425 258 81 0 0 chr9 110227546 110227583 -13848589 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1425 519 338 45 0 chr9 110227583 110227716 -13848456 - RSINE1 SINE B4 -24 141 3 7 1425 270 0 0 0 chr9 110227722 110227752 -13848420 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 7 1425 893 19 0 0 chr9 110227752 110227857 -13848315 - B1_Mm SINE Alu -1 146 42 7 1425 283 168 112 56 chr9 110227794 110227901 -13848271 - RLTR25B LTR ERVK -519 509 397 7 1425 234 0 0 158 chr9 110227902 110228016 -13848156 + (CTCTG)n Simple_repeat Simple_repeat 5 100 0 7 1425 421 68 0 33 chr9 110228017 110228078 -13848094 - PB1D9 SINE Alu -61 59 1 7 1425 585 270 62 43 chr9 110228098 110228307 -13847865 - B3 SINE B2 -3 213 1 7 1425 244 176 29 0 chr9 110228401 110228469 -13847703 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 7 1425 326 261 62 10 chr9 110228469 110228566 -13847606 - PB1D9 SINE Alu -38 111 8 7 1425 644 146 195 0 chr9 110228716 110228839 -13847333 + B1_Mus1 SINE Alu 1 147 -1 7 1425 936 73 88 0 chr9 110229036 110229172 -13847000 + URR1A DNA MER1_type 79 226 0 7 1425 573 222 95 15 chr9 110229188 110229325 -13846847 + B1_Mur2 SINE Alu 1 148 -1 7 1425 222 290 40 61 chr9 110229345 110229444 -13846728 + MIR SINE MIR 15 111 -151 7 1425 341 254 0 14 chr9 110229700 110229772 -13846400 + B1F2 SINE Alu 21 91 -58 7 1425 356 211 13 0 chr9 110229777 110229853 -13846319 + ID4_ SINE ID 5 81 -2 7 1425 696 239 67 12 chr9 110229869 110230034 -13846138 + B3 SINE B2 38 211 -5 7 1425 1056 103 60 60 chr9 110230046 110230231 -13845941 + B2_Mm2 SINE B2 2 186 -9 7 1425 819 76 0 0 chr9 110230236 110230341 -13845831 + B1_Mus1 SINE Alu 1 105 -43 7 1425 271 128 0 0 chr9 110230387 110230426 -13845746 - B1_Mur1 SINE Alu -38 111 73 7 1425 588 235 71 120 chr9 110230447 110230713 -13845459 - RMER2 LTR ERV1 -27 540 288 7 1425 2106 118 62 7 chr9 110230736 110231079 -13845093 + RLTR8 LTR ERVK 16 395 -14 7 1425 456 246 34 35 chr9 110231041 110231215 -13844957 - RMER2 LTR ERV1 -247 320 6 7 1425 292 200 0 0 chr9 110231221 110231271 -13844901 - B1_Mus1 SINE Alu -74 74 25 7 1425 186 43 0 0 chr9 110231396 110231419 -13844753 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1426 252 221 21 69 chr9 110232180 110232369 -13843803 + (CAGGC)n Simple_repeat Simple_repeat 1 180 0 8 1426 222 258 0 79 chr9 110232309 110232410 -13843762 + (CGGG)n Simple_repeat Simple_repeat 2 94 0 8 1426 357 116 0 0 chr9 110232592 110232661 -13843511 + (TG)n Simple_repeat Simple_repeat 2 70 0 8 1426 546 16 0 0 chr9 110233176 110233239 -13842933 + (GAAAA)n Simple_repeat Simple_repeat 3 65 0 8 1426 393 231 0 85 chr9 110233251 110233369 -13842803 - PB1D10 SINE Alu 0 117 10 8 1426 249 267 123 118 chr9 110233369 110233421 -13842751 - ID_B1 SINE B4 0 224 54 8 1426 675 258 55 20 chr9 110233440 110233642 -13842530 + B3 SINE B2 1 209 -7 8 1426 1593 53 0 0 chr9 110233651 110233840 -13842332 + B2_Mm1t SINE B2 2 190 -3 8 1426 220 250 172 0 chr9 110233966 110234030 -13842142 - ID4_ SINE ID -2 81 7 8 1426 234 234 58 115 chr9 110234052 110234079 -13842093 - B1F2 SINE Alu -56 93 12 8 1426 469 252 107 36 chr9 110234079 110234139 -13842033 - ID_B1 SINE B4 -69 155 97 8 1426 4895 41 12 3 chr9 110234139 110234721 -13841451 + LTRIS_Mus LTR ERV1 1 587 0 8 1426 469 252 107 36 chr9 110234721 110234800 -13841372 - ID_B1 SINE B4 -128 96 6 8 1426 385 205 0 12 chr9 110235506 110235590 -13840582 - ID4 SINE ID 0 83 1 8 1426 22 0 0 0 chr9 110235885 110235907 -13840265 + GC_rich Low_complexity Low_complexity 1 22 0 8 1426 292 264 116 12 chr9 110237118 110237226 -13838946 - PB1D7 SINE Alu -2 125 4 8 1426 873 260 59 59 chr9 110238251 110238537 -13837635 - L1MB4 LINE L1 0 6180 5903 8 1426 1008 224 28 9 chr9 110238537 110238749 -13837423 - B3 SINE B2 0 216 1 8 1426 873 260 59 59 chr9 110238749 110238867 -13837305 - L1MB4 LINE L1 -278 5902 5776 8 1426 643 136 83 0 chr9 110238867 110238990 -13837182 - B1_Mus1 SINE Alu -2 146 13 8 1426 256 314 0 0 chr9 110239020 110239090 -13837082 - L1MB4 LINE L1 -428 5755 5686 8 1426 1123 67 152 0 chr9 110239142 110239307 -13836865 - B2_Mm2 SINE B2 -3 192 3 8 1426 290 288 0 0 chr9 110239366 110239425 -13836747 - MER2 DNA MER2_type 0 345 287 8 1426 349 166 731 0 chr9 110239433 110239552 -13836620 - B3 SINE B2 -10 206 1 8 1426 305 244 133 96 chr9 110239556 110239702 -13836470 - B3A SINE B2 0 216 64 8 1426 329 215 130 8 chr9 110239755 110239886 -13836286 - L1MB4 LINE L1 -826 5320 5174 8 1426 320 43 22 0 chr9 110239942 110239988 -13836184 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 8 1426 837 63 1 5 chr9 110239988 110240104 -13836068 - B1_Mm SINE Alu -8 112 1 8 1426 752 208 7 0 chr9 110240108 110240252 -13835920 - B1_Mus2 SINE Alu -1 146 2 8 1426 438 277 22 73 chr9 110240252 110240284 -13835888 - ID_B1 SINE B4 0 221 55 8 1426 189 0 0 0 chr9 110240573 110240594 -13835578 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 8 1426 658 253 58 23 chr9 110240690 110240864 -13835308 + B3A SINE B2 1 180 -18 8 1426 896 163 7 21 chr9 110241772 110241916 -13834256 - B1_Mur1 SINE Alu 0 149 8 8 1426 660 248 75 97 chr9 110241916 110242000 -13834172 - ID_B1 SINE B4 0 224 2 8 1426 457 316 84 69 chr9 110242002 110242335 -13833837 - L1MD LINE L1 -1089 5057 4720 8 1426 189 74 0 0 chr9 110242428 110242455 -13833717 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 8 1426 489 215 165 0 chr9 110242467 110242588 -13833584 - B1_Mur4 SINE Alu -8 142 2 8 1426 485 223 116 0 chr9 110242648 110242769 -13833403 - B1_Mur1 SINE Alu -5 144 10 8 1426 204 40 0 0 chr9 110242976 110243001 -13833171 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1426 369 243 214 0 chr9 110243026 110243129 -13833043 - RSINE1 SINE B4 -37 128 4 8 1426 438 279 209 19 chr9 110243341 110243604 -13832568 + MTEa LTR MaLR 48 360 -19 8 1426 564 191 102 16 chr9 110243709 110243837 -13832335 + B1_Mus2 SINE Alu 1 139 -8 8 1426 831 264 38 9 chr9 110243847 110244057 -13832115 + MTE-int LTR MaLR 91 306 -1274 8 1426 306 281 29 19 chr9 110244057 110244162 -13832010 + PB1D10 SINE Alu 2 107 -10 8 1426 890 282 9 22 chr9 110244323 110244548 -13831624 + ID_B1 SINE B4 3 224 0 8 1426 295 289 232 21 chr9 110244885 110245079 -13831093 + MTE-int LTR MaLR 687 921 -659 8 1426 201 171 0 0 chr9 110245079 110245114 -13831058 + T-rich Low_complexity Low_complexity 1 35 0 8 1426 571 184 45 9 chr9 110245118 110245228 -13830944 - RSINE1 SINE B4 -38 127 14 8 1426 504 78 143 0 chr9 110245232 110245309 -13830863 + PB1D9 SINE Alu 22 109 -11 8 1426 339 25 0 0 chr9 110245309 110245349 -13830823 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 1426 677 324 119 14 chr9 110245388 110245720 -13830452 + MTE-int LTR MaLR 801 1243 -337 8 1426 633 242 0 16 chr9 110245721 110245847 -13830325 + B3 SINE B2 1 124 -92 8 1426 267 294 88 0 chr9 110246238 110246306 -13829866 - MER5A DNA MER1_type -108 81 8 8 1426 498 180 31 39 chr9 110246340 110246467 -13829705 + RSINE1 SINE B4 4 129 -36 8 1426 406 252 132 16 chr9 110246648 110246769 -13829403 - RSINE1 SINE B4 -29 136 2 8 1426 213 39 0 0 chr9 110246930 110246956 -13829216 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 8 1426 778 182 13 20 chr9 110246956 110247107 -13829065 - B1_Mur4 SINE Alu 0 150 1 8 1426 264 319 7 55 chr9 110247108 110247254 -13828918 + YREP_Mm Unknown Unknown 158 296 -1516 8 1426 529 317 0 21 chr9 110247131 110247276 -13828896 - ID_B1 SINE B4 -3 221 80 8 1426 615 208 23 46 chr9 110247294 110247425 -13828747 - ID_B1 SINE B4 -1 223 96 8 1426 214 256 128 19 chr9 110247633 110247784 -13828388 - L2c LINE L2 -259 3128 2961 8 1426 246 284 35 47 chr9 110248154 110248239 -13827933 + Tigger9a DNA Tigger 175 258 -474 8 1426 212 143 0 0 chr9 110248303 110248338 -13827834 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 1426 228 314 82 65 chr9 110248548 110248718 -13827454 - ORR1E LTR MaLR -167 192 20 8 1426 492 234 97 0 chr9 110249041 110249165 -13827007 + B4 SINE B4 18 153 -139 8 1426 404 256 102 16 chr9 110249533 110249660 -13826512 - ID_B1 SINE B4 -1 223 86 8 1426 321 238 93 93 chr9 110249722 110249884 -13826288 - RSINE1 SINE B4 0 165 4 8 1426 337 219 8 0 chr9 110250146 110250215 -13825957 + B3A SINE B2 15 88 -128 8 1426 396 207 36 12 chr9 110250313 110250396 -13825776 + PB1D10 SINE Alu 1 85 -32 8 1426 229 178 0 151 chr9 110250401 110250487 -13825685 + L1MD LINE L1 4616 4688 -1458 8 1426 359 244 0 0 chr9 110250507 110250585 -13825587 + PB1D10 SINE Alu 40 117 0 8 1426 471 160 13 0 chr9 110250588 110250674 -13825498 + ID4_ SINE ID 8 94 -58 8 1426 548 165 146 23 chr9 110250720 110250850 -13825322 + B1_Mur1 SINE Alu 3 148 -1 8 1426 312 217 15 52 chr9 110250947 110251032 -13825140 - PB1 SINE Alu -36 113 26 8 1426 247 259 36 36 chr9 110251038 110251122 -13825050 + L1MD LINE L1 4842 4925 -1221 8 1426 703 311 54 42 chr9 110251267 110251733 -13824439 + L1MB8 LINE L1 5607 6083 -91 8 1426 341 199 108 216 chr9 110252013 110252180 -13823992 - B1_Mur3 SINE Alu 0 149 1 8 1426 29 0 0 0 chr9 110252180 110252209 -13823963 + AT_rich Low_complexity Low_complexity 1 29 0 8 1426 302 228 25 12 chr9 110253813 110253893 -13822279 + ID4 SINE ID 1 81 -2 8 1426 692 166 275 12 chr9 110255237 110255408 -13820764 - B3 SINE B2 0 216 1 8 1426 361 218 39 0 chr9 110256181 110256259 -13819913 + ID4 SINE ID 3 83 0 8 1426 302 280 56 9 chr9 110256952 110257060 -13819112 - B1_Mur2 SINE Alu -24 125 13 8 1426 1210 54 0 0 chr9 110257148 110257295 -13818877 + B1_Mus2 SINE Alu 1 147 0 8 1426 262 300 48 48 chr9 110257346 110257451 -13818721 - RSINE1 SINE B4 -57 108 4 8 1426 315 0 0 0 chr9 110258595 110258630 -13817542 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1426 190 281 61 76 chr9 110258949 110259080 -13817092 - MIRb SINE MIR -113 155 27 8 1426 569 186 88 6 chr9 110259366 110259524 -13816648 + B3 SINE B2 1 186 -9 8 1426 277 253 215 9 chr9 110259556 110259833 -13816339 + L1M3 LINE L1 2245 2586 -3560 8 1426 498 260 163 0 chr9 110259834 110259957 -13816215 + ID_B1 SINE B4 82 224 0 8 1426 275 261 185 27 chr9 110260070 110260216 -13815956 + L1M4 LINE L1 2793 2961 -3185 8 1426 1018 121 0 0 chr9 110260254 110260395 -13815777 + B1_Mur4 SINE Alu 3 143 -7 8 1426 380 254 132 0 chr9 110260927 110261041 -13815131 + L2a LINE L2 3296 3424 -2 8 1426 265 278 96 100 chr9 110261193 110261413 -13814759 - MT2B2 LTR ERVL -191 393 175 8 1426 534 252 44 44 chr9 110261278 110261415 -13814757 - B1F1 SINE Alu -4 145 9 8 1426 693 63 0 0 chr9 110261432 110261527 -13814645 + (TTTC)n Simple_repeat Simple_repeat 3 97 0 8 1426 1654 31 0 0 chr9 110261553 110261745 -13814427 - B2_Mm1a SINE B2 0 193 2 8 1426 666 68 0 0 chr9 110261753 110261841 -13814331 + (TTTCC)n Simple_repeat Simple_repeat 3 90 0 8 1426 1054 98 0 27 chr9 110261841 110261988 -13814184 - B1_Mus1 SINE Alu -5 143 1 8 1426 918 65 283 0 chr9 110261988 110262126 -13814046 - B2_Mm2 SINE B2 -18 177 1 8 1426 1081 185 54 0 chr9 110262346 110262551 -13813621 + B3 SINE B2 1 216 0 8 1426 420 198 82 36 chr9 110262735 110262845 -13813327 + PB1D10 SINE Alu 1 115 -2 8 1426 366 23 0 0 chr9 110262859 110262902 -13813270 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 8 1426 28 0 0 0 chr9 110262931 110262959 -13813213 + AT_rich Low_complexity Low_complexity 1 28 0 8 1426 1266 105 0 27 chr9 110262959 110263145 -13813027 + B2_Mm2 SINE B2 2 182 -13 8 1426 458 290 121 29 chr9 110263163 110263337 -13812835 - B3A SINE B2 -4 194 5 8 1426 314 272 67 19 chr9 110263337 110263442 -13812730 + L1ME3 LINE L1 5696 5805 -639 9 1426 351 293 0 0 chr9 110263461 110263543 -13812629 - ID4_ SINE ID 0 83 2 9 1426 1043 116 14 0 chr9 110263565 110263712 -13812460 + B1_Mur4 SINE Alu 2 150 0 9 1426 23 33 0 0 chr9 110263811 110263841 -13812331 + AT_rich Low_complexity Low_complexity 1 30 0 9 1426 712 217 25 32 chr9 110263850 110264007 -13812165 + RSINE1 SINE B4 3 158 -7 9 1426 252 302 74 25 chr9 110264150 110264272 -13811900 + L1ME3 LINE L1 6025 6152 -10 9 1426 189 0 0 0 chr9 110265439 110265460 -13810712 + (TTG)n Simple_repeat Simple_repeat 2 22 0 9 1426 557 276 25 50 chr9 110266042 110266060 -13810112 + ID_B1 SINE B4 69 224 0 9 1426 864 171 0 14 chr9 110266060 110266202 -13809970 + B1_Mur4 SINE Alu 11 150 0 9 1426 270 291 47 84 chr9 110266227 110266418 -13809754 + L1MC3 LINE L1 6908 7091 -694 9 1426 980 90 7 0 chr9 110266425 110266570 -13809602 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 9 1426 456 244 145 17 chr9 110266570 110266687 -13809485 - ID_B1 SINE B4 -12 212 81 9 1426 610 205 364 15 chr9 110266693 110266965 -13809207 + L1MC3 LINE L1 7137 7503 -282 9 1426 222 211 0 0 chr9 110267146 110267184 -13808988 - B3A SINE B2 -64 134 97 9 1426 592 281 50 6 chr9 110267376 110267537 -13808635 + MIRb SINE MIR 89 256 -12 9 1426 864 251 25 0 chr9 110267979 110268178 -13807994 + B3 SINE B2 2 205 -11 9 1426 802 147 14 56 chr9 110268209 110268353 -13807819 + B1_Mur3 SINE Alu 2 139 -10 9 1426 905 194 94 18 chr9 110268537 110268852 -13807320 - RMER10A LTR ERVL -42 400 1 9 1426 420 356 106 70 chr9 110269529 110269668 -13806504 - MLT1F2 LTR MaLR -114 434 282 9 1426 1428 71 38 0 chr9 110269668 110269851 -13806321 - B2_Mm2 SINE B2 -4 191 2 9 1426 502 325 75 34 chr9 110269851 110270128 -13806044 - MLT1F2 LTR MaLR -267 281 3 9 1426 802 155 7 27 chr9 110270283 110270429 -13805743 - B1_Mus2 SINE Alu 0 147 5 9 1426 414 266 11 0 chr9 110271156 110271250 -13804922 + PB1D10 SINE Alu 5 99 -18 9 1426 1007 97 7 14 chr9 110271468 110271615 -13804557 + B1_Mus1 SINE Alu 1 146 -2 9 1426 301 333 10 20 chr9 110272057 110272155 -13804017 + PB1D7 SINE Alu 18 114 -6 9 1426 4265 190 148 8 chr9 110272934 110273832 -13802340 + RMER1B Other Other 43 1066 0 9 1426 709 164 63 56 chr9 110273865 110274007 -13802165 + B1_Mus2 SINE Alu 5 147 0 9 1426 473 196 103 22 chr9 110274182 110274318 -13801854 - B1F2 SINE Alu -1 148 2 9 1426 285 146 0 0 chr9 110277276 110277324 -13798848 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1426 268 284 19 10 chr9 110277356 110277459 -13798713 + (TA)n Simple_repeat Simple_repeat 2 105 0 9 1426 509 230 33 27 chr9 110277497 110277658 -13798514 - B3A SINE B2 -8 187 27 9 1426 1262 28 0 0 chr9 110277679 110277824 -13798348 - B1_Mus1 SINE Alu -2 146 2 9 1426 232 200 0 0 chr9 110277858 110277898 -13798274 - B3A SINE B2 -156 42 3 9 1426 433 287 31 54 chr9 110277973 110278102 -13798070 + RSINE1 SINE B4 2 127 -38 9 1426 384 22 0 0 chr9 110278103 110278148 -13798024 + (CATA)n Simple_repeat Simple_repeat 2 46 0 9 1426 750 251 167 20 chr9 110279254 110279506 -13796666 + B4 SINE B4 2 290 -2 9 1426 739 224 0 15 chr9 110279514 110279650 -13796522 - B1_Mur1 SINE Alu -15 134 1 9 1426 185 315 40 14 chr9 110279720 110279794 -13796378 - L2b LINE L2 -3 3372 3297 9 1426 381 75 0 0 chr9 110280282 110280335 -13795837 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1426 453 66 0 0 chr9 110280401 110280462 -13795710 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1426 269 331 49 41 chr9 110284516 110284541 -13791631 - B1_Mur4 SINE Alu 0 150 130 9 1426 819 231 59 15 chr9 110284541 110284743 -13791429 - B3 SINE B2 -4 212 2 9 1426 373 254 66 8 chr9 110284743 110284848 -13791324 - B1F SINE Alu -21 129 18 9 1426 905 188 38 11 chr9 110285638 110285821 -13790351 - B3 SINE B2 -27 189 2 9 1426 286 221 112 31 chr9 110285878 110285976 -13790196 - MIR SINE MIR -64 198 93 9 1426 198 0 0 0 chr9 110286447 110286469 -13789703 + (GGA)n Simple_repeat Simple_repeat 2 23 0 9 1426 942 63 0 0 chr9 110290237 110290363 -13785809 + (CTGGGG)n Simple_repeat Simple_repeat 6 131 0 9 1426 510 255 55 28 chr9 110294809 110294954 -13781218 + B1F SINE Alu 1 149 0 9 1426 1101 209 25 0 chr9 110296513 110296714 -13779458 - B3 SINE B2 -7 209 4 9 1426 550 259 15 0 chr9 110296768 110296899 -13779273 + ID_B1 SINE B4 86 218 -6 9 1426 385 368 65 48 chr9 110296975 110297265 -13778907 + L1ME4a LINE L1 5713 6011 -113 9 1426 927 291 46 0 chr9 110297325 110297586 -13778586 - B4A SINE B4 -5 287 15 9 1426 549 110 0 0 chr9 110297607 110297698 -13778474 + (CA)n Simple_repeat Simple_repeat 2 92 0 9 1426 397 250 87 79 chr9 110297781 110297907 -13778265 + B1_Mur1 SINE Alu 8 134 -15 9 1426 443 185 7 144 chr9 110297887 110297998 -13778174 - B1_Mur2 SINE Alu -12 137 42 9 1426 576 238 179 0 chr9 110297998 110298166 -13778006 - B3A SINE B2 0 198 1 9 1426 443 185 7 144 chr9 110298166 110298193 -13777979 - B1_Mur2 SINE Alu -108 41 18 9 1426 722 175 44 0 chr9 110298268 110298405 -13777767 - B1_Mus1 SINE Alu 0 148 6 9 1426 244 217 58 0 chr9 110298549 110298618 -13777554 - Tigger7 DNA MER2_type -2118 373 301 9 1426 529 68 0 0 chr9 110298638 110298711 -13777461 + B1_Mus2 SINE Alu 75 147 0 9 1426 538 231 29 22 chr9 110298749 110298886 -13777286 + B1_Mur3 SINE Alu 10 147 -2 9 1426 240 268 247 0 chr9 110298940 110299037 -13777135 + RSINE1 SINE B4 17 137 -28 9 1426 254 356 20 0 chr9 110299115 110299216 -13776956 - Tigger7 DNA MER2_type -2221 270 168 9 1426 1026 45 105 0 chr9 110299407 110299540 -13776632 + B1_Mus2 SINE Alu 1 147 0 9 1426 628 255 110 0 chr9 110299597 110299742 -13776430 + RSINE1 SINE B4 2 162 -3 9 1426 23 0 0 0 chr9 110299754 110299777 -13776395 + AT_rich Low_complexity Low_complexity 1 23 0 9 1426 417 264 78 23 chr9 110299811 110299939 -13776233 + B1F2 SINE Alu 14 148 -1 9 1426 545 142 133 0 chr9 110299959 110300072 -13776100 + B1_Mur4 SINE Alu 21 148 -2 9 1426 722 254 67 10 chr9 110300089 110300284 -13775888 + ID_B1 SINE B4 16 221 -3 9 1426 313 296 4 8 chr9 110300291 110300418 -13775754 + RSINE1 SINE B4 13 137 -87 9 1426 233 212 235 12 chr9 110300380 110300461 -13775711 + PB1D10 SINE Alu 19 117 0 9 1426 435 113 0 70 chr9 110301040 110301126 -13775046 + 4.5SRNA scRNA scRNA 1 80 -14 9 1426 1004 197 61 0 chr9 110301151 110301349 -13774823 + B3 SINE B2 2 211 -5 9 1426 27 0 0 0 chr9 110301356 110301383 -13774789 + AT_rich Low_complexity Low_complexity 1 27 0 9 1426 391 289 47 0 chr9 110301400 110301528 -13774644 + ID_B1 SINE B4 2 135 -89 9 1426 317 265 0 0 chr9 110301536 110301604 -13774568 + L1M2 LINE L1 5525 5592 -708 9 1426 325 259 35 53 chr9 110301810 110301924 -13774248 + RSINE1 SINE B4 12 123 -42 9 1426 395 171 56 22 chr9 110301926 110302016 -13774156 - MTD LTR MaLR -131 288 196 9 1426 207 295 10 93 chr9 110302079 110302176 -13773996 + MIRc SINE MIR 116 204 -64 9 1426 247 303 10 73 chr9 110302310 110302406 -13773766 + RLTR25B LTR ERVK 418 507 -521 9 1426 488 196 93 0 chr9 110302324 110302431 -13773741 + B1_Mur1 SINE Alu 26 142 -7 9 1426 386 276 18 37 chr9 110302828 110302937 -13773235 - PB1 SINE Alu -7 120 14 9 1426 283 287 114 15 chr9 110303392 110303523 -13772649 + ID_B1 SINE B4 74 217 -7 9 1426 1219 55 7 0 chr9 110303534 110303680 -13772492 + B1_Mus1 SINE Alu 2 148 0 9 1426 918 276 43 36 chr9 110303697 110303975 -13772197 + B4 SINE B4 1 280 -12 9 1426 268 292 50 0 chr9 110304999 110305098 -13771074 + ID4_ SINE ID 2 104 -48 9 1426 1201 49 7 0 chr9 110305679 110305823 -13770349 - B1_Mus2 SINE Alu 0 147 3 9 1426 180 0 0 0 chr9 110305823 110305843 -13770329 + (TC)n Simple_repeat Simple_repeat 2 21 0 9 1426 1165 140 11 26 chr9 110305843 110306034 -13770138 - B2_Mm2 SINE B2 -7 188 1 9 1426 1718 31 0 0 chr9 110306064 110306257 -13769915 - B2_Mm1t SINE B2 0 193 1 9 1426 291 237 26 45 chr9 110306325 110306423 -13769749 + ID4_ SINE ID 6 104 -48 9 1426 805 200 30 0 chr9 110306686 110306821 -13769351 - B1_Mur2 SINE Alu -8 141 3 9 1426 1325 87 55 0 chr9 110306894 110307077 -13769095 + B2_Mm2 SINE B2 2 194 -1 9 1426 407 296 43 43 chr9 110307102 110307240 -13768932 + B1F SINE Alu 2 139 -10 9 1426 276 152 186 0 chr9 110307287 110307357 -13768815 - PB1D10 SINE Alu 0 127 34 9 1426 333 295 26 159 chr9 110307391 110307617 -13768555 - B3A SINE B2 -2 196 1 9 1426 1131 162 11 146 chr9 110307687 110307809 -13768363 + URR1B DNA MER1_type 1 122 -103 9 1426 1238 54 0 0 chr9 110307809 110307956 -13768216 + B1_Mus1 SINE Alu 1 147 -1 9 1426 1131 162 11 146 chr9 110307956 110308093 -13768079 + URR1B DNA MER1_type 123 225 0 9 1426 732 217 42 0 chr9 110308214 110308357 -13767815 + B1_Mur2 SINE Alu 1 149 0 9 1426 557 250 0 8 chr9 110308382 110308511 -13767661 + RSINE1 SINE B4 3 130 -35 9 1426 459 95 0 0 chr9 110308534 110308608 -13767564 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 1426 482 218 164 68 chr9 110308826 110309003 -13767169 + URR1A DNA MER1_type 1 194 -32 9 1426 561 64 116 11 chr9 110309279 110309374 -13766798 + B1_Mus1 SINE Alu 5 109 -39 9 1426 183 42 0 0 chr9 110309374 110309398 -13766774 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1426 240 206 0 117 chr9 110309484 110309561 -13766611 + ID4 SINE ID 2 69 -14 9 1426 296 256 0 13 chr9 110311387 110311466 -13764706 + PB1D10 SINE Alu 35 112 -5 9 1426 199 343 85 58 chr9 110311478 110311772 -13764400 - L2 LINE L2 -666 2753 2452 9 1426 1055 216 24 24 chr9 110311922 110312131 -13764041 + B3 SINE B2 1 209 -7 1 1426 1253 47 0 7 chr9 110312148 110312297 -13763875 + B1_Mus1 SINE Alu 1 148 0 1 1426 265 262 132 20 chr9 110312676 110312828 -13763344 + L1MB3 LINE L1 6006 6174 -9 1 1426 303 317 32 0 chr9 110312883 110313006 -13763166 + ID_B1 SINE B4 86 212 -12 1 1426 252 55 55 18 chr9 110313181 110313236 -13762936 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 1 1426 1380 0 0 32 chr9 110313264 110313450 -13762722 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1426 335 154 0 15 chr9 110313455 110313521 -13762651 + CT-rich Low_complexity Low_complexity 2 66 0 1 1426 373 235 24 12 chr9 110313677 110313759 -13762413 - ID4_ SINE ID 0 83 1 1 1426 267 309 0 0 chr9 110313923 110313991 -13762181 + ID2 SINE ID 3 70 -13 1 1426 1232 34 0 7 chr9 110314527 110314674 -13761498 + B1_Mm SINE Alu 2 147 0 1 1426 255 61 0 0 chr9 110314675 110314708 -13761464 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 1 1426 279 179 239 0 chr9 110314753 110314820 -13761352 + PB1D10 SINE Alu 30 112 -5 1 1426 213 321 0 0 chr9 110314829 110314885 -13761287 + GA-rich Low_complexity Low_complexity 4 59 0 1 1426 294 29 0 0 chr9 110314905 110314940 -13761232 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1426 292 271 40 14 chr9 110314957 110315101 -13761071 + L1M5 LINE L1 5358 5510 -646 1 1426 623 48 365 0 chr9 110315110 110315233 -13760939 + B2_Mm2 SINE B2 2 169 -26 1 1426 207 0 0 0 chr9 110315284 110315307 -13760865 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1 1426 761 127 0 8 chr9 110315319 110315438 -13760734 - B1_Mur3 SINE Alu -23 126 9 1 1426 449 238 6 0 chr9 110315744 110315908 -13760264 + (CTGGGG)n Simple_repeat Simple_repeat 2 166 0 1 1426 204 40 0 0 chr9 110315950 110315975 -13760197 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1426 1159 56 14 0 chr9 110316080 110316224 -13759948 + B1_Mm SINE Alu 2 147 0 1 1426 231 204 0 0 chr9 110316234 110316283 -13759889 + GA-rich Low_complexity Low_complexity 2 50 0 1 1426 482 306 8 8 chr9 110316686 110316808 -13759364 - RSINE1 SINE B4 -16 149 28 1 1426 359 243 87 35 chr9 110316813 110316928 -13759244 - ID_B1 SINE B4 -1 223 103 1 1426 454 282 7 127 chr9 110317012 110317057 -13759115 - RSINE1 SINE B4 -31 134 108 1 1426 1638 47 0 0 chr9 110317057 110317250 -13758922 - B2_Mm1a SINE B2 0 193 1 1 1426 454 282 7 127 chr9 110317250 110317354 -13758818 - RSINE1 SINE B4 -58 107 3 1 1426 1194 68 0 0 chr9 110317452 110317598 -13758574 - B1_Mus2 SINE Alu 0 147 2 1 1426 311 179 18 0 chr9 110318242 110318298 -13757874 - B3A SINE B2 -136 62 6 1 1426 304 256 12 24 chr9 110318403 110318487 -13757685 - ID4 SINE ID 0 83 1 1 1426 22 0 0 0 chr9 110318537 110318559 -13757613 + AT_rich Low_complexity Low_complexity 1 22 0 1 1426 534 226 207 0 chr9 110318561 110318725 -13757447 - B3A SINE B2 0 198 1 1 1426 231 275 101 0 chr9 110318730 110318839 -13757333 - Lx7 LINE L1 -12 7684 7565 1 1426 407 188 29 59 chr9 110318839 110318861 -13757311 - PB1D10 SINE Alu -13 104 6 1 1426 428 150 38 0 chr9 110318861 110318941 -13757231 - ID_B1 SINE B4 -55 169 87 1 1426 243 296 0 0 chr9 110319036 110319090 -13757082 + AluG_3 SINE Alu 165 218 -93 1 1426 271 307 0 0 chr9 110319125 110319200 -13756972 + GA-rich Low_complexity Low_complexity 4 78 0 1 1426 550 184 55 0 chr9 110319257 110319366 -13756806 - B1_Mur4 SINE Alu -10 140 26 1 1426 816 192 192 0 chr9 110319418 110319595 -13756577 - B3 SINE B2 -5 211 1 1 1426 396 251 21 37 chr9 110319882 110320076 -13756096 + L1M4 LINE L1 5280 5459 -900 1 1426 887 152 280 5 chr9 110320118 110320329 -13755843 - RLTR24 LTR ERV1 -260 269 1 1 1426 317 169 71 24 chr9 110320616 110320701 -13755471 + RSINE1 SINE B4 11 99 -66 1 1426 213 159 45 0 chr9 110320845 110320889 -13755283 + CT-rich Low_complexity Low_complexity 2 47 0 1 1426 39 22 0 0 chr9 110320971 110321017 -13755155 + AT_rich Low_complexity Low_complexity 1 46 0 1 1426 479 151 80 3 chr9 110321017 110321119 -13755053 - B1F2 SINE Alu -6 143 37 1 1426 406 246 228 35 chr9 110321187 110321419 -13754753 + RMER21B LTR ERV1 293 569 -273 1 1426 293 176 0 0 chr9 110321458 110321509 -13754663 - B1_Mus1 SINE Alu -87 61 11 1 1426 889 204 0 0 chr9 110321517 110321664 -13754508 - B1_Mur1 SINE Alu 0 149 3 1 1426 1270 34 0 7 chr9 110321737 110321886 -13754286 - B1_Mus1 SINE Alu 0 148 1 1 1426 397 249 0 0 chr9 110322597 110322742 -13753430 + ID_B1 SINE B4 1 189 -35 1 1426 348 290 28 18 chr9 110322660 110322769 -13753403 + B1F1 SINE Alu 27 136 -13 1 1426 684 151 103 0 chr9 110322898 110323024 -13753148 - ID_B1 SINE B4 -4 220 82 1 1426 288 258 81 20 chr9 110322936 110323035 -13753137 - MT2B LTR ERVL -345 256 152 1 1426 592 205 18 0 chr9 110323036 110323148 -13753024 - B1F2 SINE Alu -27 122 9 1 1426 340 269 14 110 chr9 110323148 110323182 -13752990 - MT2B LTR ERVL -325 276 145 1 1426 180 302 19 19 chr9 110323234 110323288 -13752884 + MIR SINE MIR 94 147 -115 1 1426 283 148 93 0 chr9 110323585 110323639 -13752533 + RSINE1 SINE B4 67 125 -40 1 1426 345 100 0 0 chr9 110323798 110323848 -13752324 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1426 237 317 48 82 chr9 110324933 110325225 -13750947 + L2c LINE L2 2920 3201 -186 1 1426 695 238 73 0 chr9 110325651 110325802 -13750370 + RSINE1 SINE B4 2 163 -2 1 1426 495 48 0 0 chr9 110326014 110326076 -13750096 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1426 532 275 69 60 chr9 110326347 110326579 -13749593 + RMER2 LTR ERV1 334 567 0 1 1426 295 289 30 20 chr9 110326579 110326666 -13749506 - B1F SINE Alu -56 93 6 1 1426 889 239 123 4 chr9 110326844 110327079 -13749093 - Lx8 LINE L1 -340 7133 6871 1 1426 357 259 296 16 chr9 110327128 110327364 -13748808 + Lx8 LINE L1 6142 6444 -1029 1 1426 1154 242 70 6 chr9 110327535 110327847 -13748325 - ORR1D2 LTR MaLR -32 338 7 1 1426 1234 54 0 0 chr9 110327942 110328089 -13748083 - B1_Mus2 SINE Alu 0 147 1 1 1426 548 288 217 55 chr9 110328157 110328401 -13747771 + B4A SINE B4 8 290 -2 1 1426 1044 169 31 16 chr9 110332044 110332236 -13743936 - B2_Mm2 SINE B2 0 195 1 1 1426 431 215 13 0 chr9 110332303 110332382 -13743790 - ID4_ SINE ID -2 81 2 1 1426 345 140 0 0 chr9 110333126 110333183 -13742989 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 1 1426 614 182 114 0 chr9 110333202 110333334 -13742838 - B1_Mus1 SINE Alu -1 147 1 1 1426 337 231 77 0 chr9 110333337 110333428 -13742744 - PB1D7 SINE Alu -1 119 22 1 1426 796 230 148 11 chr9 110333417 110333606 -13742566 - B4 SINE B4 -77 215 1 1 1426 261 130 43 0 chr9 110334350 110334396 -13741776 - ID_B1 SINE B4 -69 155 108 1 1426 21 0 0 0 chr9 110334454 110334475 -13741697 + AT_rich Low_complexity Low_complexity 1 21 0 1 1426 673 286 7 0 chr9 110334476 110334623 -13741549 - B1_Mur1 SINE Alu 0 149 2 1 1426 335 271 0 0 chr9 110334865 110334924 -13741248 + PB1D7 SINE Alu 2 60 -60 1 1426 226 200 82 41 chr9 110334884 110334957 -13741215 - YREP_Mm Unknown Unknown -1516 296 221 1 1426 242 304 10 52 chr9 110335289 110335386 -13740786 + YREP_Mm Unknown Unknown 208 300 -1512 1 1426 412 250 10 59 chr9 110335305 110335407 -13740765 - ID_B1 SINE B4 -47 177 81 1 1426 352 80 40 0 chr9 110335424 110335474 -13740698 + B3 SINE B2 3 54 -162 1 1426 521 299 58 14 chr9 110335565 110335704 -13740468 - RSINE1 SINE B4 -4 161 17 1 1426 414 231 71 44 chr9 110335896 110336009 -13740163 + PB1D10 SINE Alu 2 117 0 1 1426 303 263 0 14 chr9 110336706 110336800 -13739372 - ID2 SINE ID -58 94 2 1 1426 240 337 35 0 chr9 110339128 110339214 -13736958 + MIRb SINE MIR 171 259 -9 1 1426 442 190 39 39 chr9 110339499 110339603 -13736569 - PB1D7 SINE Alu 0 120 17 1 1426 483 142 0 0 chr9 110340153 110340259 -13735913 + (TC)n Simple_repeat Simple_repeat 1 106 0 1 1426 235 292 46 0 chr9 110340260 110340325 -13735847 - ID4 SINE ID -11 72 5 1 1426 982 107 77 22 chr9 110341704 110341732 -13734440 - B2_Mm2 SINE B2 -3 192 156 1 1426 540 45 0 0 chr9 110341732 110341799 -13734373 + (CCTA)n Simple_repeat Simple_repeat 1 67 0 1 1426 982 107 77 22 chr9 110341799 110341951 -13734221 - B2_Mm2 SINE B2 -40 155 2 1 1426 338 196 189 32 chr9 110341999 110342094 -13734078 - PB1D10 SINE Alu 0 117 8 1 1426 22 0 0 0 chr9 110342834 110342856 -13733316 + GC_rich Low_complexity Low_complexity 1 22 0 1 1426 1095 95 14 0 chr9 110342885 110343032 -13733140 - B1_Mur4 SINE Alu 0 150 2 1 1426 376 312 103 58 chr9 110343192 110343461 -13732711 - B4A SINE B4 -16 276 14 1 1426 387 0 0 0 chr9 110343641 110343684 -13732488 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1426 247 33 0 0 chr9 110343684 110343714 -13732458 - B2_Mm1t SINE B2 -33 160 131 1 1426 241 71 607 0 chr9 110343685 110343741 -13732431 - B2_Mm2 SINE B2 -37 158 69 1 1426 411 83 0 0 chr9 110343953 110344013 -13732159 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1426 653 324 20 55 chr9 110344015 110344036 -13732136 - ID_B1 SINE B4 -31 193 179 1 1426 639 217 13 110 chr9 110344036 110344191 -13731981 - B1_Mur1 SINE Alu -7 142 3 1 1426 653 324 20 55 chr9 110344191 110344368 -13731804 - ID_B1 SINE B4 -46 178 2 1 1426 189 0 0 0 chr9 110344594 110344615 -13731557 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1426 377 259 124 90 chr9 110344649 110344677 -13731495 - B2_Mm2 SINE B2 -9 186 163 1 1426 228 86 0 0 chr9 110344677 110344712 -13731460 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1426 557 275 101 0 chr9 110344712 110344861 -13731311 - B3A SINE B2 -32 166 3 1 1426 280 301 104 84 chr9 110345003 110345359 -13730813 + L2 LINE L2 1432 1794 -1625 1 1426 1334 85 17 22 chr9 110345466 110345647 -13730525 - B2_Mm2 SINE B2 -14 181 2 1 1426 351 0 0 0 chr9 110345653 110345692 -13730480 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 1426 1164 64 0 0 chr9 110345699 110345839 -13730333 - B1_Mus2 SINE Alu -7 140 1 1 1426 814 230 15 68 chr9 110345870 110346075 -13730097 + B2_Mm2 SINE B2 2 195 0 1 1426 24 49 0 47 chr9 110346103 110346167 -13730005 + AT_rich Low_complexity Low_complexity 1 61 0 1 1426 198 258 0 0 chr9 110346197 110346286 -13729886 + GA-rich Low_complexity Low_complexity 1 89 0 1 1426 339 245 19 7 chr9 110346311 110346775 -13729397 + GA-rich Low_complexity Low_complexity 1 470 0 1 1426 396 222 0 0 chr9 110346844 110346988 -13729184 + GA-rich Low_complexity Low_complexity 4 147 0 1 1426 322 299 50 75 chr9 110346988 110347147 -13729025 + HAL1-3A_ME LINE L1 2284 2438 -420 1 1426 280 253 12 0 chr9 110347162 110347328 -13728844 + GA-rich Low_complexity Low_complexity 4 171 0 1 1426 398 244 9 0 chr9 110347351 110347679 -13728493 + GA-rich Low_complexity Low_complexity 1 331 0 1 1426 417 230 0 0 chr9 110347718 110347870 -13728302 + GA-rich Low_complexity Low_complexity 4 155 0 1 1426 323 195 17 35 chr9 110347894 110348248 -13727924 + GA-rich Low_complexity Low_complexity 1 347 0 1 1426 356 313 82 30 chr9 110348256 110348498 -13727674 + HAL1-3A_ME LINE L1 2282 2444 -414 1 1426 429 252 4 4 chr9 110348506 110348761 -13727411 + GA-rich Low_complexity Low_complexity 1 255 0 1 1426 323 319 24 71 chr9 110348761 110348930 -13727242 + HAL1-3A_ME LINE L1 2284 2444 -414 1 1426 308 354 67 20 chr9 110348903 110349053 -13727119 + HAL1-3A_ME LINE L1 2284 2440 -418 1 1426 182 227 13 0 chr9 110349060 110349135 -13727037 + GA-rich Low_complexity Low_complexity 4 79 0 1 1426 429 248 207 50 chr9 110350184 110350324 -13725848 + RSINE1 SINE B4 4 165 0 1 1426 282 73 0 0 chr9 110350342 110350383 -13725789 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1426 214 256 62 37 chr9 110350388 110350469 -13725703 + MIRb SINE MIR 185 267 -1 1 1426 473 297 8 15 chr9 110350560 110350690 -13725482 - B1F SINE Alu -20 129 1 1 1426 242 373 45 0 chr9 110350570 110350704 -13725468 - B4 SINE B4 -83 209 70 1 1426 331 248 209 9 chr9 110351358 110351468 -13724704 - B1_Mur2 SINE Alu -16 133 2 1 1426 423 83 0 0 chr9 110351624 110351684 -13724488 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1426 216 67 0 0 chr9 110352426 110352456 -13723716 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1426 180 0 0 0 chr9 110352551 110352571 -13723601 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1426 402 323 20 0 chr9 110352624 110352901 -13723271 + GA-rich Low_complexity Low_complexity 1 282 0 1 1426 1426 143 273 0 chr9 110353454 110353754 -13722418 + ORR1C2 LTR MaLR 1 382 -2 1 1426 258 338 7 103 chr9 110353834 110353979 -13722193 + B3 SINE B2 86 216 0 1 1426 322 157 53 99 chr9 110354016 110354131 -13722041 + PB1D10 SINE Alu 32 140 -9 1 1426 440 175 214 10 chr9 110354168 110354266 -13721906 + PB1D9 SINE Alu 1 118 -2 1 1426 1395 73 11 0 chr9 110354572 110354749 -13721423 + B2_Mm1t SINE B2 1 179 -14 1 1426 398 91 6 26 chr9 110354796 110354912 -13721260 + B2_Mm2 SINE B2 47 195 0 1 1426 28 0 0 0 chr9 110354987 110355015 -13721157 + AT_rich Low_complexity Low_complexity 1 28 0 1 1426 939 169 0 13 chr9 110355296 110355446 -13720726 - B1_Mur4 SINE Alu 0 150 3 1 1426 1126 187 5 10 chr9 110355469 110355669 -13720503 - ID_B1 SINE B4 -23 201 3 1 1426 489 223 20 80 chr9 110355887 110356038 -13720134 - MER3 DNA MER1_type -4 205 64 1 1426 1148 89 7 0 chr9 110356258 110356404 -13719768 + B1_Mus1 SINE Alu 2 148 0 1 1426 418 245 28 56 chr9 110356447 110356555 -13719617 + B1F1 SINE Alu 6 110 -39 1 1426 5638 34 0 0 chr9 110356575 110357254 -13718918 + MERVL-int LTR ERVL 4682 5360 -125 1 1426 399 167 46 35 chr9 110357254 110357341 -13718831 + ORR1A3-int LTR MaLR 553 640 -1323 1 1426 257 243 33 83 chr9 110357350 110357379 -13718793 + ORR1A3-int LTR MaLR 591 613 -1350 1 1426 1782 24 0 0 chr9 110357379 110357587 -13718585 + MT2_Mm LTR ERVL 1 208 -285 1 1426 387 0 0 0 chr9 110357775 110357818 -13718354 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1426 495 225 0 112 chr9 110358696 110358821 -13717351 - PB1D9 SINE Alu -9 111 1 1 1426 25 0 0 0 chr9 110358830 110358855 -13717317 + AT_rich Low_complexity Low_complexity 1 25 0 1 1426 567 180 213 0 chr9 110358855 110358977 -13717195 - B1_Mur4 SINE Alu -2 148 1 1 1426 856 217 31 36 chr9 110358982 110359178 -13716994 - B3A SINE B2 -3 195 1 1 1426 188 0 74 0 chr9 110359256 110359283 -13716889 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1 1426 508 170 226 0 chr9 110359283 110359389 -13716783 - B1_Mus1 SINE Alu -17 131 2 1 1426 776 184 230 0 chr9 110359396 110359570 -13716602 - B3 SINE B2 0 216 3 1 1426 577 319 105 0 chr9 110359833 110360081 -13716091 - B4A SINE B4 -18 274 1 1 1426 356 294 43 56 chr9 110360119 110360281 -13715891 - RSINE1 SINE B4 -4 161 2 1 1426 307 246 0 0 chr9 110360321 110360378 -13715794 - B4A SINE B4 -4 288 232 1 1426 382 222 198 11 chr9 110360391 110360404 -13715768 - B4A SINE B4 -10 282 270 1 1426 520 53 0 26 chr9 110360404 110360482 -13715690 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1426 382 222 198 11 chr9 110360482 110360559 -13715613 - B4A SINE B4 -23 269 175 1 1426 429 215 25 0 chr9 110360821 110360900 -13715272 - ID4_ SINE ID 0 83 3 1 1426 680 273 7 0 chr9 110361003 110361142 -13715030 + B1_Mur2 SINE Alu 1 140 -9 1 1426 414 0 0 0 chr9 110361154 110361200 -13714972 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1426 477 0 0 0 chr9 110361200 110361252 -13714920 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1426 232 333 0 15 chr9 110361680 110361747 -13714425 - ID4_ SINE ID 0 83 18 1 1426 315 266 31 41 chr9 110361723 110361821 -13714351 + MER58B DNA MER1_type 229 325 -16 1 1426 233 317 66 40 chr9 110362126 110362146 -13714026 + YREP_Mm Unknown Unknown 162 311 -1496 1 1426 483 252 79 24 chr9 110362146 110362272 -13713900 - ID_B1 SINE B4 -5 219 87 1 1426 624 231 58 0 chr9 110362282 110362403 -13713769 - B1F1 SINE Alu -12 137 10 1 1426 417 295 52 44 chr9 110362403 110362417 -13713755 - ID_B1 SINE B4 -12 212 77 1 1427 1409 62 34 0 chr9 110362826 110363005 -13713167 + B2_Mm1a SINE B2 1 185 -8 1 1427 889 189 0 7 chr9 110363014 110363145 -13713027 + B1_Mus2 SINE Alu 5 135 -12 1 1427 324 0 0 0 chr9 110363145 110363181 -13712991 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 1427 889 189 0 7 chr9 110363181 110363193 -13712979 + B1_Mus2 SINE Alu 136 147 0 1 1427 208 342 119 43 chr9 110363529 110363874 -13712298 + L2c LINE L2 2938 3308 -79 1 1427 299 300 28 103 chr9 110364133 110364176 -13711996 - MER5A DNA MER1_type -40 149 117 1 1427 307 159 202 64 chr9 110364176 110364270 -13711902 + PB1D10 SINE Alu 1 107 -10 1 1427 225 0 0 0 chr9 110364270 110364295 -13711877 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1427 352 264 22 8 chr9 110364295 110364395 -13711777 - MER5A DNA MER1_type -73 116 16 1 1427 444 256 91 0 chr9 110364631 110364752 -13711420 + ID_B1 SINE B4 90 221 -3 1 1427 1043 208 64 39 chr9 110365298 110365578 -13710594 + B4A SINE B4 2 288 -4 1 1427 1360 66 49 5 chr9 110365686 110365870 -13710302 + B2_Mm1t SINE B2 2 193 0 1 1427 812 133 57 29 chr9 110366090 110366275 -13709897 + ORR1B1 LTR MaLR 4 199 -168 1 1427 1256 14 0 0 chr9 110366275 110366413 -13709759 + B1_Mus2 SINE Alu 1 138 -9 1 1427 397 108 0 24 chr9 110366423 110366498 -13709674 + ORR1B1 LTR MaLR 312 421 0 1 1427 1222 68 0 0 chr9 110367077 110367224 -13708948 + B1_Mus1 SINE Alu 2 148 0 1 1427 230 256 12 108 chr9 110367329 110367449 -13708723 + B4 SINE B4 41 148 -76 1 1427 1991 82 151 19 chr9 110367502 110367826 -13708346 + RMER6A LTR ERVK 1 367 -389 1 1427 468 35 0 0 chr9 110368235 110368293 -13707879 + (GAAA)n Simple_repeat Simple_repeat 1 58 0 1 1427 1221 68 0 0 chr9 110368392 110368540 -13707632 + B1_Mus1 SINE Alu 1 148 0 1 1427 284 0 28 0 chr9 110368545 110368581 -13707591 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1 1427 1183 75 0 0 chr9 110368967 110369114 -13707058 + B1_Mus2 SINE Alu 1 147 0 1 1427 408 336 0 0 chr9 110369226 110369342 -13706830 + RSINE1 SINE B4 37 152 -13 1 1427 498 279 70 0 chr9 110369413 110369542 -13706630 + B1F SINE Alu 1 138 -11 1 1427 183 80 0 0 chr9 110369542 110369567 -13706605 + (CAAAG)n Simple_repeat Simple_repeat 2 26 0 1 1427 380 267 36 93 chr9 110369580 110369769 -13706403 - B4 SINE B4 -2 290 83 1 1427 252 385 0 0 chr9 110370000 110370083 -13706089 - ID4 SINE ID 0 83 1 1 1427 226 250 168 40 chr9 110370248 110370373 -13705799 + MER58A DNA MER1_type 52 192 -32 1 1427 711 238 14 0 chr9 110370991 110371134 -13705038 - B1F SINE Alu -2 147 3 1 1427 545 240 47 0 chr9 110371333 110371462 -13704710 + B1F SINE Alu 6 140 -9 1 1427 250 336 40 16 chr9 110371774 110371898 -13704274 + MIR3 SINE MIR 81 207 -1 1 1427 423 256 42 55 chr9 110372160 110372325 -13703847 + RSINE1 SINE B4 2 164 -1 1 1427 647 157 9 0 chr9 110372758 110372866 -13703306 + B1_Mur3 SINE Alu 36 144 -5 1 1427 486 209 47 9 chr9 110372950 110373056 -13703116 - PB1D9 SINE Alu -8 112 3 1 1427 4172 73 0 0 chr9 110373281 110373812 -13702360 + L1Md_F2 LINE L1 6052 6582 0 1 1427 799 201 0 7 chr9 110374178 110374328 -13701844 + B1_Mur2 SINE Alu 1 149 0 1 1427 2249 104 3 65 chr9 110374382 110374733 -13701439 - ORR1A4 LTR MaLR 0 329 1 1 1427 488 313 0 0 chr9 110374769 110374884 -13701288 + PB1 SINE Alu 2 116 -11 1 1427 1653 42 0 0 chr9 110374887 110375079 -13701093 + B2_Mm1a SINE B2 1 192 -1 1 1427 294 50 0 0 chr9 110375088 110375128 -13701044 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1427 1202 188 5 5 chr9 110375155 110375364 -13700808 + B3 SINE B2 3 211 -5 1 1427 953 155 13 7 chr9 110375378 110375527 -13700645 + B1_Mur4 SINE Alu 1 150 0 1 1427 437 260 188 0 chr9 110375576 110375757 -13700415 - MIR SINE MIR -4 258 44 1 1427 341 240 233 0 chr9 110376185 110376335 -13699837 + MER5A DNA MER1_type 4 188 -1 1 1427 180 0 0 0 chr9 110376343 110376363 -13699809 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1 1427 757 213 13 13 chr9 110376957 110376968 -13699204 - RSINE1 SINE B4 -4 161 151 1 1427 546 16 0 0 chr9 110376968 110377031 -13699141 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1427 757 213 13 13 chr9 110377031 110377176 -13698996 - RSINE1 SINE B4 -15 150 5 1 1427 1162 88 0 0 chr9 110377507 110377654 -13698518 + B1_Mus1 SINE Alu 1 147 -1 1 1427 219 267 160 0 chr9 110377765 110377840 -13698332 - MIRc SINE MIR -102 166 80 1 1427 904 96 81 7 chr9 110377922 110378058 -13698114 - B1_Mus1 SINE Alu 0 148 3 1 1427 302 324 47 57 chr9 110380571 110380713 -13695459 - L2b LINE L2 -10 3416 3245 1 1427 484 233 0 0 chr9 110381167 110381253 -13694919 + PB1D10 SINE Alu 26 111 -6 1 1427 387 0 0 0 chr9 110381409 110381452 -13694720 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1427 207 0 0 0 chr9 110381510 110381533 -13694639 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1427 601 256 30 8 chr9 110381574 110381708 -13694464 - RSINE1 SINE B4 -26 139 3 1 1427 685 188 98 0 chr9 110381717 110381850 -13694322 - B1_Mur1 SINE Alu -2 147 2 1 1427 942 135 13 20 chr9 110382269 110382420 -13693752 + B1_Mur4 SINE Alu 1 150 0 1 1427 564 237 0 56 chr9 110382442 110382585 -13693587 - ID_B1 SINE B4 0 224 90 1 1427 228 278 0 118 chr9 110382495 110382597 -13693575 - PB1D10 SINE Alu -27 90 1 1 1427 658 221 153 83 chr9 110382625 110382887 -13693285 + B4A SINE B4 11 291 -1 1 1427 896 107 0 64 chr9 110382979 110383119 -13693053 - B1_Mur4 SINE Alu -5 145 15 1 1427 233 317 37 56 chr9 110383315 110383420 -13692752 + ID_B1 SINE B4 60 162 -62 1 1427 251 256 198 47 chr9 110383420 110383506 -13692666 + B4 SINE B4 2 101 -64 1 1427 197 335 186 18 chr9 110383711 110383878 -13692294 - L3 LINE CR1 -61 4428 4234 1 1427 1137 211 19 0 chr9 110383985 110384193 -13691979 + B3 SINE B2 5 216 0 1 1427 733 204 124 34 chr9 110384339 110384517 -13691655 + B3A SINE B2 1 194 -4 1 1427 516 32 0 0 chr9 110384519 110384581 -13691591 + (GAA)n Simple_repeat Simple_repeat 1 62 0 1 1427 22 0 0 0 chr9 110384664 110384686 -13691486 + AT_rich Low_complexity Low_complexity 1 22 0 1 1427 1106 116 19 104 chr9 110384701 110384819 -13691353 + B2_Mm2 SINE B2 2 116 -79 1 1427 1226 55 0 0 chr9 110384819 110384965 -13691207 + B1_Mus2 SINE Alu 2 147 0 1 1427 1106 116 19 104 chr9 110384965 110385057 -13691115 + B2_Mm2 SINE B2 117 194 -1 1 1427 624 224 8 8 chr9 110385356 110385482 -13690690 - ID_B1 SINE B4 -21 203 78 1 1427 385 324 26 45 chr9 110385735 110385890 -13690282 + RSINE1 SINE B4 2 153 -12 1 1427 297 0 0 0 chr9 110385893 110385926 -13690246 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1427 540 294 7 20 chr9 110386074 110386220 -13689952 - RSINE1 SINE B4 -19 146 3 1 1427 403 262 84 0 chr9 110386403 110386510 -13689662 - ID_B1 SINE B4 -4 220 105 1 1427 336 286 126 0 chr9 110386404 110386523 -13689649 - B1F SINE Alu -5 144 11 1 1427 335 246 0 0 chr9 110387019 110387084 -13689088 + B3 SINE B2 15 79 -137 1 1427 276 77 0 0 chr9 110387214 110387253 -13688919 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 1 1427 627 186 0 0 chr9 110387253 110387355 -13688817 - B1_Mur2 SINE Alu -15 134 33 1 1427 3357 155 80 8 chr9 110387965 110388552 -13687620 - Lx5 LINE L1 -1 7049 6421 1 1427 351 0 0 0 chr9 110388616 110388655 -13687517 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1427 523 222 0 3 chr9 110388659 110388770 -13687402 - B1_Mur1 SINE Alu -3 144 36 1 1427 796 183 42 0 chr9 110388818 110388960 -13687212 - B1_Mur3 SINE Alu 0 149 2 1 1427 391 134 0 0 chr9 110388974 110389041 -13687131 - L1Md_F2 LINE L1 -12 6570 6504 1 1427 1035 162 34 39 chr9 110389076 110389282 -13686890 + B3 SINE B2 1 205 -11 1 1427 549 292 23 2 chr9 110389304 110389460 -13686712 + ID_B1 SINE B4 67 224 0 1 1427 412 297 9 0 chr9 110389662 110389773 -13686399 + PB1D10 SINE Alu 1 112 -5 1 1427 256 326 0 73 chr9 110390078 110390174 -13685998 + B1_Mus1 SINE Alu 22 110 -38 1 1427 459 0 0 0 chr9 110390248 110390299 -13685873 + (CTG)n Simple_repeat Simple_repeat 1 51 0 1 1427 416 299 80 0 chr9 110390438 110390465 -13685707 + B1F2 SINE Alu 1 144 -1 1 1427 582 189 47 0 chr9 110390465 110390571 -13685601 + ID_B1 SINE B4 109 219 -5 1 1427 529 169 443 7 chr9 110391758 110391907 -13684265 + ID_B1 SINE B4 3 216 -8 1 1427 355 246 48 34 chr9 110391909 110392056 -13684116 + B1F SINE Alu 1 149 0 1 1427 296 46 14 71 chr9 110392056 110392126 -13684046 + (CAAAA)n Simple_repeat Simple_repeat 1 66 0 1 1427 226 317 12 12 chr9 110392793 110392876 -13683296 - ID4_ SINE ID 0 83 1 1 1427 586 130 108 7 chr9 110392928 110393067 -13683105 + RMER17B LTR ERVK 312 464 -494 1 1427 645 197 118 0 chr9 110393089 110393216 -13682956 + B1_Mur3 SINE Alu 1 142 -7 1 1427 27 0 0 0 chr9 110393262 110393289 -13682883 + AT_rich Low_complexity Low_complexity 1 27 0 1 1427 1048 86 7 7 chr9 110393344 110393485 -13682687 - B1_Mus1 SINE Alu -6 142 2 1 1427 35 41 0 0 chr9 110393487 110393536 -13682636 + AT_rich Low_complexity Low_complexity 1 49 0 1 1427 785 210 47 31 chr9 110393549 110393741 -13682431 - B3A SINE B2 -3 195 1 1 1427 392 292 19 94 chr9 110393751 110393793 -13682379 - B1F SINE Alu -1 148 117 1 1427 558 265 17 0 chr9 110393793 110393910 -13682262 + PB1D7 SINE Alu 1 119 -1 1 1427 392 292 19 94 chr9 110393910 110394026 -13682146 - B1F SINE Alu -33 116 2 1 1427 383 282 26 0 chr9 110394070 110394148 -13682024 - ID4_ SINE ID -2 81 2 1 1427 454 192 50 10 chr9 110394221 110394321 -13681851 + PB1D10 SINE Alu 11 114 -3 1 1427 573 241 17 0 chr9 110394354 110394470 -13681702 + RSINE1 SINE B4 4 121 -44 1 1427 994 256 101 88 chr9 110394546 110395103 -13681069 + L1MB8 LINE L1 5593 6156 -22 1 1427 323 325 0 0 chr9 110395105 110395182 -13680990 + B1_Mus2 SINE Alu 1 77 -70 1 1427 1196 42 7 0 chr9 110395183 110395327 -13680845 + B1_Mm SINE Alu 3 147 0 1 1427 809 197 142 0 chr9 110395419 110395602 -13680570 + B3 SINE B2 1 209 -7 1 1427 21 36 0 0 chr9 110395920 110395948 -13680224 + AT_rich Low_complexity Low_complexity 1 28 0 1 1427 755 181 16 16 chr9 110395976 110396105 -13680067 + B1F2 SINE Alu 20 148 -1 1 1427 1183 62 7 0 chr9 110396111 110396257 -13679915 + B1_Mus1 SINE Alu 1 147 -1 1 1427 192 25 100 0 chr9 110396257 110396297 -13679875 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1427 1207 170 39 0 chr9 110396454 110396660 -13679512 - B3 SINE B2 -1 215 2 1 1427 443 46 15 0 chr9 110397854 110397919 -13678253 - L1_Mus2 LINE L1 0 6566 6501 1 1427 541 311 72 24 chr9 110399046 110399375 -13676797 - MLT1A LTR MaLR -15 452 1 1 1427 268 250 59 0 chr9 110400378 110400446 -13675726 + Tigger15a DNA TcMar 625 696 -19 1 1427 445 164 22 9 chr9 110400895 110400988 -13675184 + B1F2 SINE Alu 1 97 -30 1 1427 375 229 24 24 chr9 110401095 110401180 -13674992 + B1_Mur4 SINE Alu 65 149 -1 1 1427 979 52 22 22 chr9 110401234 110401373 -13674799 - B1_Mm SINE Alu 0 147 9 1 1427 1188 51 0 0 chr9 110401618 110401756 -13674416 + B1_Mus2 SINE Alu 1 138 -9 1 1427 387 0 0 0 chr9 110401756 110401799 -13674373 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1427 447 19 0 0 chr9 110401805 110401857 -13674315 + (GAAA)n Simple_repeat Simple_repeat 1 52 0 1 1427 356 303 12 79 chr9 110402034 110402199 -13673973 - B4A SINE B4 -138 154 1 1 1427 946 256 20 53 chr9 110402199 110402434 -13673738 - B4 SINE B4 -61 231 5 1 1427 698 211 7 39 chr9 110402451 110402604 -13673568 + B1_Mur3 SINE Alu 2 149 0 1 1427 230 231 0 19 chr9 110402800 110402853 -13673319 + GA-rich Low_complexity Low_complexity 5 56 0 1 1427 394 184 136 48 chr9 110403028 110403131 -13673041 + PB1D9 SINE Alu 4 115 -5 1 1427 518 160 59 0 chr9 110403146 110403315 -13672857 + GA-rich Low_complexity Low_complexity 2 180 0 1 1427 828 235 17 6 chr9 110403499 110403679 -13672493 - B3A SINE B2 -15 183 2 1 1427 548 223 0 0 chr9 110403689 110403792 -13672380 - ID_B1 SINE B4 -7 217 115 1 1427 309 307 150 0 chr9 110403792 110403809 -13672363 - B1F1 SINE Alu 0 113 4 1 1427 374 257 0 0 chr9 110404548 110404622 -13671550 - RSINE1 SINE B4 0 165 92 1 1427 260 264 56 33 chr9 110404585 110404675 -13671497 + ID_B1 SINE B4 126 217 -7 1 1427 866 219 0 13 chr9 110404685 110404838 -13671334 + B3 SINE B2 3 153 -63 1 1427 249 119 0 0 chr9 110404838 110404880 -13671292 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1427 645 224 71 87 chr9 110404880 110404922 -13671250 + B2_Mm2 SINE B2 147 195 0 1 1427 942 113 0 0 chr9 110405171 110405313 -13670859 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 1 1427 274 333 20 0 chr9 110405346 110405445 -13670727 - PB1D10 SINE Alu -8 109 9 1 1427 328 73 0 0 chr9 110405547 110405588 -13670584 - HAL1-3A_ME LINE L1 -841 2017 1977 1 1427 225 250 18 9 chr9 110405607 110405716 -13670456 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1427 1182 68 0 0 chr9 110406403 110406551 -13669621 + B1_Mus1 SINE Alu 1 148 0 1 1427 247 193 0 0 chr9 110406551 110406608 -13669564 + A-rich Low_complexity Low_complexity 1 57 0 1 1427 558 130 194 8 chr9 110406654 110406778 -13669394 - B1_Mus1 SINE Alu 0 148 2 1 1427 867 138 64 70 chr9 110406818 110407005 -13669167 + B2_Mm2 SINE B2 2 187 -8 1 1427 711 278 48 39 chr9 110407106 110407312 -13668860 - ID_B1 SINE B4 -9 215 8 1 1427 281 283 86 101 chr9 110407244 110407556 -13668616 + ORR1E LTR MaLR 5 317 -42 1 1427 1192 68 0 7 chr9 110407556 110407705 -13668467 - B1_Mus1 SINE Alu 0 148 1 1 1427 739 122 26 17 chr9 110407707 110407824 -13668348 - PB1D9 SINE Alu -2 118 1 1 1427 281 308 119 75 chr9 110407824 110407863 -13668309 + ORR1E LTR MaLR 318 359 0 1 1427 585 279 7 13 chr9 110407914 110408063 -13668109 + ID_B1 SINE B4 77 224 0 1 1427 357 24 0 0 chr9 110408064 110408106 -13668066 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1427 858 143 28 21 chr9 110408447 110408590 -13667582 + B1_Mur4 SINE Alu 7 150 0 1 1427 258 32 0 0 chr9 110409961 110409992 -13666180 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1427 4163 93 26 0 chr9 110410081 110410660 -13665512 - Lx2 LINE L1 -3 6994 6401 1 1427 1068 248 78 92 chr9 110410687 110410890 -13665282 - MTEb LTR MaLR 0 379 179 1 1427 537 16 0 0 chr9 110410890 110410952 -13665220 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 1 1427 1068 248 78 92 chr9 110410952 110410965 -13665207 - MTEb LTR MaLR -201 178 177 1 1427 703 182 217 6 chr9 110410965 110411131 -13665041 - B3 SINE B2 -14 202 2 1 1427 1068 248 78 92 chr9 110411131 110411295 -13664877 - MTEb LTR MaLR -203 176 3 1 1427 494 137 189 0 chr9 110411353 110411448 -13664724 + PB1D10 SINE Alu 5 117 0 1 1427 966 201 73 25 chr9 110411452 110411656 -13664516 + B3 SINE B2 1 214 -2 1 1427 496 228 195 0 chr9 110411676 110411825 -13664347 - B3A SINE B2 -16 182 5 1 1427 209 33 33 0 chr9 110412050 110412080 -13664092 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 1 1427 321 65 0 0 chr9 110412561 110412572 -13663600 + (T)n Simple_repeat Simple_repeat 1 11 0 1 1427 1254 34 0 0 chr9 110412572 110412719 -13663453 - B1_Mus2 SINE Alu 0 147 1 1 1427 321 65 0 0 chr9 110412719 110412753 -13663419 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1427 1155 223 65 11 chr9 110413126 110413403 -13662769 + B4 SINE B4 1 292 0 1 1427 408 40 0 0 chr9 110413674 110413724 -13662448 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1427 299 286 0 72 chr9 110414358 110414441 -13661731 - PB1D7 SINE Alu -11 109 33 1 1427 215 260 37 61 chr9 110414503 110414585 -13661587 + MIRc SINE MIR 3 82 -186 1 1427 277 292 14 0 chr9 110414868 110414931 -13661241 + PB1D10 SINE Alu 5 68 -49 1 1427 356 340 66 26 chr9 110414931 110415082 -13661090 + RSINE1 SINE B4 1 157 -8 1 1427 188 163 0 23 chr9 110415142 110415186 -13660986 + GA-rich Low_complexity Low_complexity 3 45 0 1 1427 622 320 86 19 chr9 110415226 110415436 -13660736 + ID_B1 SINE B4 1 224 0 1 1427 514 291 49 7 chr9 110415449 110415591 -13660581 + B3A SINE B2 36 183 -15 1 1427 330 207 0 33 chr9 110415650 110415710 -13660462 + B1_Mus2 SINE Alu 2 59 -88 1 1427 594 204 0 0 chr9 110415710 110415939 -13660233 + GA-rich Low_complexity Low_complexity 1 229 0 1 1427 456 169 15 6 chr9 110415962 110416051 -13660121 + PB1D9 SINE Alu 42 133 -14 1 1427 1163 106 65 32 chr9 110416052 110416238 -13659934 + B2_Mm2 SINE B2 3 194 -1 1 1427 1098 43 0 60 chr9 110416241 110416390 -13659782 + B1_Mm SINE Alu 5 144 -3 1 1427 186 43 0 0 chr9 110416390 110416413 -13659759 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1427 2245 59 39 22 chr9 110416415 110416727 -13659445 + L1_Mus2 LINE L1 6250 6566 0 1 1427 351 65 0 0 chr9 110416751 110416797 -13659375 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 1 1427 714 252 19 6 chr9 110417315 110417475 -13658697 + RSINE1 SINE B4 2 163 -2 1 1427 499 262 82 0 chr9 110417550 110417672 -13658500 + ID_B1 SINE B4 87 218 -6 1 1427 300 289 57 96 chr9 110417681 110417838 -13658334 + B4A SINE B4 1 151 -141 1 1427 385 125 13 53 chr9 110417967 110418043 -13658129 + B1_Mus2 SINE Alu 74 146 -1 1 1427 439 335 60 28 chr9 110418423 110418638 -13657534 - B4A SINE B4 -4 288 67 1 1427 740 237 153 10 chr9 110418638 110418847 -13657325 - RMER15 LTR ERVL 0 575 337 1 1427 1234 41 0 20 chr9 110418857 110419006 -13657166 + B1_Mus2 SINE Alu 2 147 0 1 1427 216 0 0 0 chr9 110419016 110419040 -13657132 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1427 307 274 53 62 chr9 110419112 110419225 -13656947 - RMER15 LTR ERVL -416 159 48 1 1427 1606 134 166 6 chr9 110419225 110419556 -13656616 + ORR1C2 LTR MaLR 1 384 0 1 1427 667 108 9 9 chr9 110420646 110420758 -13655414 + (TC)n Simple_repeat Simple_repeat 1 112 0 1 1427 488 303 0 29 chr9 110420758 110420772 -13655400 - ID_B1 SINE B4 -1 223 92 1 1427 885 139 0 0 chr9 110420772 110420894 -13655278 - B1_Mus1 SINE Alu -15 133 12 1 1427 495 182 28 83 chr9 110420802 110420910 -13655262 - MT2B LTR ERVL -344 257 156 1 1427 759 245 77 15 chr9 110422244 110422439 -13653733 + B3 SINE B2 2 208 -8 1 1427 1398 221 66 79 chr9 110422470 110422634 -13653538 - MTD LTR MaLR -45 374 211 1 1427 704 197 88 0 chr9 110422634 110422771 -13653401 + B1_Mur4 SINE Alu 1 149 -1 1 1427 357 43 0 0 chr9 110422772 110422819 -13653353 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1427 770 276 30 10 chr9 110422820 110423018 -13653154 - B3 SINE B2 -14 202 1 1 1427 1398 221 66 79 chr9 110423018 110423228 -13652944 - MTD LTR MaLR -209 210 1 1 1427 629 267 36 2 chr9 110423275 110423443 -13652729 + B3 SINE B2 2 191 -4 1 1427 461 115 0 11 chr9 110423453 110423541 -13652631 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 1427 638 257 29 0 chr9 110424386 110424522 -13651650 - ID_B1 SINE B4 -1 223 84 1 1427 1000 169 109 21 chr9 110424627 110424820 -13651352 - B3 SINE B2 -6 210 1 1 1427 391 252 50 112 chr9 110424965 110424988 -13651184 + MT2B LTR ERVL 97 130 -471 1 1427 413 169 56 0 chr9 110424988 110425059 -13651113 + B1_Mur2 SINE Alu 58 132 -17 1 1427 794 132 26 0 chr9 110425056 110425170 -13651002 + B1_Mus1 SINE Alu 23 139 -9 1 1427 391 252 50 112 chr9 110425059 110425144 -13651028 + MT2B LTR ERVL 131 264 -337 1 1427 209 33 33 0 chr9 110425170 110425200 -13650972 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1427 506 313 0 0 chr9 110425209 110425324 -13650848 - ID_B1 SINE B4 -28 196 82 1 1427 562 290 0 27 chr9 110425330 110425479 -13650693 - ID_B1 SINE B4 0 224 80 1 1427 288 183 0 104 chr9 110425553 110425620 -13650552 + ID4 SINE ID 4 63 -20 1 1427 406 261 8 50 chr9 110425645 110425766 -13650406 + PB1D10 SINE Alu 1 116 -1 1 1427 480 252 0 10 chr9 110426053 110426157 -13650015 + ID_B1 SINE B4 118 220 -4 1 1427 320 312 132 52 chr9 110426176 110426426 -13649746 - ORR1E LTR MaLR -41 318 49 1 1427 502 285 86 22 chr9 110426563 110426798 -13649374 + RLTR12B LTR ERVK 9 229 -299 1 1427 709 187 57 7 chr9 110426997 110427137 -13649035 - B1_Mur2 SINE Alu 0 149 3 1 1427 213 279 0 0 chr9 110427727 110427770 -13648402 + ID2 SINE ID 30 72 -11 1 1427 281 117 17 0 chr9 110427775 110427835 -13648337 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1427 672 266 99 99 chr9 110427871 110428084 -13648088 + ID_B1 SINE B4 3 215 -9 1 1427 241 307 100 23 chr9 110427988 110428118 -13648054 - YREP_Mm Unknown Unknown -1518 294 155 1 1427 758 298 45 20 chr9 110428868 110429104 -13647068 + B4A SINE B4 1 242 -50 1 1427 1225 48 0 20 chr9 110429104 110429254 -13646918 + B1_Mus1 SINE Alu 2 148 0 1 1427 405 258 20 10 chr9 110429408 110429506 -13646666 - B1F1 SINE Alu -44 105 7 1 1427 212 241 106 71 chr9 110429605 110429690 -13646482 + B4A SINE B4 51 138 -154 1 1427 384 254 90 99 chr9 110429728 110429929 -13646243 + L1MEe LINE L1 410 608 -4246 1 1427 279 167 162 25 chr9 110430172 110430252 -13645920 - PB1D10 SINE Alu -9 108 18 1 1427 192 97 0 0 chr9 110430464 110430495 -13645677 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1427 559 250 365 7 chr9 110430652 110430961 -13645211 - MTD LTR MaLR 0 419 1 1 1427 1173 49 14 0 chr9 110431109 110431253 -13644919 + B1_Mus2 SINE Alu 2 147 0 1 1427 231 36 0 0 chr9 110431253 110431281 -13644891 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1427 1857 147 109 6 chr9 110431537 110431885 -13644287 + ORR1B1 LTR MaLR 2 385 -9 1 1427 739 137 120 0 chr9 110431891 110432008 -13644164 + B1_Mur1 SINE Alu 6 136 -13 1 1427 234 0 0 0 chr9 110432008 110432034 -13644138 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1427 416 150 59 0 chr9 110432153 110432252 -13643920 - B1_Mur3 SINE Alu -5 144 6 1 1427 1138 61 0 33 chr9 110432760 110432912 -13643260 + B1_Mus1 SINE Alu 2 148 0 1 1427 636 271 23 32 chr9 110433083 110433304 -13642868 + ID_B1 SINE B4 2 220 -4 1 1427 348 306 37 0 chr9 110433393 110433501 -13642671 + PB1D10 SINE Alu 1 112 -5 1 1427 500 233 135 30 chr9 110433703 110433836 -13642336 + RSINE1 SINE B4 12 158 -7 1 1427 508 108 62 3 chr9 110433872 110433976 -13642196 + B1_Mus1 SINE Alu 2 120 0 1 1427 271 297 26 54 chr9 110433982 110434107 -13642065 + PB1D7 SINE Alu 21 134 -15 1 1427 255 114 0 0 chr9 110434989 110435033 -13641139 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 1 1427 204 314 6 19 chr9 110435056 110435215 -13640957 + (CCG)n Simple_repeat Simple_repeat 1 157 0 1 1427 428 230 66 8 chr9 110436369 110436500 -13639672 - B1F SINE Alu 0 149 10 1 1427 262 340 51 51 chr9 110437532 110437690 -13638482 + MIR SINE MIR 83 240 -22 1 1427 219 69 0 0 chr9 110438412 110438441 -13637731 + (CCCTAA)n Simple_repeat Simple_repeat 2 30 0 1 1427 199 327 117 19 chr9 110438464 110438567 -13637605 - L2 LINE L2 -428 2991 2879 1 1427 183 100 0 0 chr9 110438573 110438603 -13637569 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1 1427 457 233 12 0 chr9 110438609 110438695 -13637477 - PB1 SINE Alu -33 94 8 1 1427 744 295 146 0 chr9 110438798 110439134 -13637038 - L2 LINE L2 -773 2646 2262 1 1427 325 291 29 10 chr9 110439151 110439255 -13636917 - PB1D10 SINE Alu -10 107 2 1 1427 344 274 103 21 chr9 110439309 110439406 -13636766 - PB1D10 SINE Alu -2 115 11 1 1427 354 319 28 42 chr9 110439410 110439554 -13636618 + B1F1 SINE Alu 6 147 -2 1 1427 285 29 0 0 chr9 110439627 110439661 -13636511 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1 1427 541 160 91 36 chr9 110439695 110439805 -13636367 - B1_Mur1 SINE Alu 0 149 34 1 1427 236 173 162 62 chr9 110439737 110439817 -13636355 - MT2B LTR ERVL -338 263 176 1 1427 765 213 0 0 chr9 110439863 110439999 -13636173 - B1_Mur3 SINE Alu -13 136 1 1 1427 353 307 0 65 chr9 110440318 110440426 -13635746 - PB1D10 SINE Alu -2 115 15 1 1427 309 261 58 42 chr9 110440663 110440783 -13635389 - RSINE1 SINE B4 0 165 44 1 1427 946 207 163 30 chr9 110441485 110441749 -13634423 + MTD LTR MaLR 119 417 -2 1 1427 1453 60 16 0 chr9 110441842 110442027 -13634145 - B2_Mm1a SINE B2 -5 188 1 1 1427 1005 92 45 167 chr9 110442321 110442543 -13633629 - B2_Mm2 SINE B2 0 195 1 1 1427 602 167 143 0 chr9 110442558 110442684 -13633488 - B1_Mus2 SINE Alu -1 146 3 1 1427 243 0 0 0 chr9 110442692 110442719 -13633453 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1427 929 93 31 8 chr9 110442719 110442744 -13633428 - B1_Mm SINE Alu -10 137 12 1 1427 369 217 58 117 chr9 110442744 110442841 -13633331 - MT2B LTR ERVL -337 264 177 1 1427 279 0 0 0 chr9 110442841 110442872 -13633300 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1427 369 217 58 117 chr9 110442872 110442894 -13633278 - MT2B LTR ERVL -425 176 152 1 1427 266 250 19 226 chr9 110442875 110443030 -13633142 - ID_B1 SINE B4 0 224 102 1 1427 278 269 102 37 chr9 110442928 110443036 -13633136 - B1F SINE Alu -22 127 13 1 1427 525 211 59 87 chr9 110443174 110443345 -13632827 - B3 SINE B2 -7 209 43 1 1427 255 336 18 71 chr9 110443347 110443459 -13632713 + MT2B LTR ERVL 158 263 -338 1 1427 598 229 38 15 chr9 110443361 110443494 -13632678 + B1_Mur1 SINE Alu 8 143 -6 1 1427 578 188 10 0 chr9 110443808 110443917 -13632255 - B2_Mm2 SINE B2 -65 151 32 1 1427 465 289 16 40 chr9 110444039 110444165 -13632007 - B3 SINE B2 -24 192 70 1 1427 443 275 236 6 chr9 110444195 110444356 -13631816 - ID_B1 SINE B4 0 224 27 1 1427 550 283 0 16 chr9 110444393 110444515 -13631657 - ID_B1 SINE B4 -5 219 100 1 1427 468 314 35 49 chr9 110444515 110444537 -13631635 - B1F1 SINE Alu -5 144 3 1 1427 254 325 39 69 chr9 110444541 110444653 -13631519 - AluF_3 SINE Alu -103 208 1 1 1427 271 254 240 25 chr9 110444750 110444871 -13631301 - RSINE1 SINE B4 -2 163 17 1 1427 418 194 194 0 chr9 110445177 110445280 -13630892 - B1_Mus2 SINE Alu -10 137 15 1 1427 335 264 187 9 chr9 110445429 110445479 -13630693 - B3 SINE B2 -87 129 79 1 1427 216 67 0 0 chr9 110445479 110445509 -13630663 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1427 335 264 187 9 chr9 110445509 110445565 -13630607 - B3 SINE B2 -138 78 4 1 1427 523 171 212 8 chr9 110445580 110445698 -13630474 - B1_Mur4 SINE Alu -8 142 1 1 1427 839 213 90 5 chr9 110445735 110445924 -13630248 - B3 SINE B2 -2 214 10 1 1427 666 168 14 58 chr9 110445923 110446062 -13630110 - B1_Mur4 SINE Alu -16 134 2 1 1427 359 339 111 37 chr9 110446070 110446260 -13629912 - ID_B1 SINE B4 -9 215 12 1 1427 406 232 19 23 chr9 110446251 110446352 -13629820 - PB1D10 SINE Alu -11 109 5 1 1427 266 263 25 38 chr9 110446598 110446677 -13629495 - ID4_ SINE ID -3 80 3 1 1427 370 254 61 8 chr9 110446683 110446814 -13629358 - B1F SINE Alu -8 141 4 1 1427 324 321 68 8 chr9 110446835 110446967 -13629205 - B1F SINE Alu 0 149 10 1 1427 776 166 278 0 chr9 110447979 110448148 -13628024 - B3 SINE B2 0 216 1 1 1427 550 227 148 0 chr9 110448351 110448479 -13627693 - B1_Mm SINE Alu 0 147 1 1 1427 528 184 50 58 chr9 110448589 110448710 -13627462 - PB1D9 SINE Alu 0 120 1 1 1427 213 364 0 0 chr9 110450175 110450315 -13625857 + (CCA)n Simple_repeat Simple_repeat 1 140 0 1 1427 228 111 0 0 chr9 110454044 110454080 -13622092 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1427 687 229 80 21 chr9 110454413 110454600 -13621572 + B3 SINE B2 12 209 -7 1 1427 554 230 50 0 chr9 110454656 110454795 -13621377 - B1_Mus2 SINE Alu 0 147 2 1 1427 636 167 217 45 chr9 110454877 110455034 -13621138 - B3 SINE B2 -3 213 30 1 1427 269 26 26 0 chr9 110455039 110455077 -13621095 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1427 581 62 47 0 chr9 110455077 110455184 -13620988 - B1_Mur4 SINE Alu 0 150 40 1 1427 248 242 0 108 chr9 110455190 110455264 -13620908 - ID SINE ID -157 67 2 1 1427 228 283 62 52 chr9 110455269 110455366 -13620806 - PB1D10 SINE Alu -19 98 1 1 1427 734 159 22 50 chr9 110455988 110456127 -13620045 - B1_Mur2 SINE Alu -5 144 10 1 1427 1171 124 16 11 chr9 110456147 110456334 -13619838 - B2_Mm2 SINE B2 -6 189 2 1 1427 295 167 179 0 chr9 110456447 110456525 -13619647 + PB1D9 SINE Alu 27 118 -2 1 1427 412 181 0 62 chr9 110456679 110456769 -13619403 - B1_Mus2 SINE Alu -11 139 55 1 1427 583 173 118 15 chr9 110457017 110457152 -13619020 - B1_Mur1 SINE Alu 0 149 1 1 1427 843 256 6 16 chr9 110457211 110457394 -13618778 - B3 SINE B2 -2 214 34 1 1427 604 226 81 22 chr9 110457442 110457578 -13618594 + B1_Mur2 SINE Alu 3 146 -3 1 1427 525 237 37 22 chr9 110457563 110457697 -13618475 - B1F SINE Alu -5 144 9 1 1427 1442 54 11 0 chr9 110457811 110457995 -13618177 + B2_Mm1t SINE B2 2 187 -6 1 1427 232 319 0 28 chr9 110458164 110458235 -13617937 - B2_Mm1t SINE B2 -99 94 26 1 1427 323 222 222 0 chr9 110458288 110458378 -13617794 + RSINE1 SINE B4 4 113 -52 1 1427 240 100 0 0 chr9 110459107 110459147 -13617025 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1427 921 213 69 10 chr9 110459637 110459841 -13616331 - B3 SINE B2 0 216 1 1 1427 639 207 27 20 chr9 110459972 110460120 -13616052 - B1_Mur1 SINE Alu 0 149 1 1 1427 846 126 16 0 chr9 110460138 110460265 -13615907 - B1_Mur4 SINE Alu -13 137 9 1 1427 360 250 50 74 chr9 110460161 110460282 -13615890 - B4 SINE B4 -94 198 81 1 1427 339 217 61 61 chr9 110460392 110460490 -13615682 - RSINE1 SINE B4 -27 138 41 1 1427 276 205 86 108 chr9 110460903 110460972 -13615200 + PB1D9 SINE Alu 30 95 -25 1 1427 1505 172 87 49 chr9 110460972 110461185 -13614987 - ORR1C2 LTR MaLR -4 380 165 1 1427 1442 58 16 0 chr9 110461185 110461374 -13614798 - B2_Mm1t SINE B2 0 193 2 1 1427 1505 172 87 49 chr9 110461374 110461526 -13614646 - ORR1C2 LTR MaLR -220 164 1 1 1427 276 205 86 108 chr9 110461526 110461549 -13614623 + PB1D9 SINE Alu 96 120 0 1 1427 1111 59 0 0 chr9 110461553 110461688 -13614484 + B1_Mus1 SINE Alu 3 137 -11 1 1427 207 0 0 0 chr9 110461691 110461714 -13614458 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 1427 238 128 0 41 chr9 110461773 110461822 -13614350 + B1_Mus2 SINE Alu 101 147 0 1 1427 560 242 58 0 chr9 110461869 110461989 -13614183 + B3A SINE B2 3 129 -69 1 1427 277 243 19 0 chr9 110462032 110462139 -13614033 + (TA)n Simple_repeat Simple_repeat 1 109 0 1 1427 528 16 0 0 chr9 110462640 110462701 -13613471 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 1 1427 1296 91 17 0 chr9 110462701 110462876 -13613296 - B2_Mm2 SINE B2 -16 179 2 1 1427 253 314 161 0 chr9 110463854 110463972 -13612200 - YREP_Mm Unknown Unknown -1490 322 186 1 1427 335 276 49 51 chr9 110463875 110463998 -13612174 + PB1 SINE Alu 21 131 -18 1 1427 232 25 24 48 chr9 110464105 110464147 -13612025 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1427 1271 27 0 0 chr9 110464149 110464295 -13611877 - B1_Mus1 SINE Alu -2 146 1 1 1427 462 291 101 32 chr9 110464306 110464344 -13611828 - Charlie1a DNA MER1_type -43 1412 1376 1 1427 784 35 274 26 chr9 110464344 110464461 -13611711 - B1_Mus2 SINE Alu -1 146 1 1 1427 462 291 101 32 chr9 110464461 110464699 -13611473 - Charlie1a DNA MER1_type -80 1375 1118 1 1427 623 182 95 0 chr9 110464923 110465049 -13611123 - B1_Mur1 SINE Alu 0 149 12 1 1427 384 262 0 0 chr9 110465051 110465131 -13611041 - ID_B1 SINE B4 -47 177 98 1 1427 237 270 26 26 chr9 110465128 110465204 -13610968 - ID4_ SINE ID -6 77 2 1 1427 346 244 204 138 chr9 110465824 110465976 -13610196 - RSINE1 SINE B4 0 165 4 1 1427 862 189 105 26 chr9 110466134 110466324 -13609848 + B3 SINE B2 6 210 -6 1 1427 280 336 46 117 chr9 110466375 110466614 -13609558 + B4A SINE B4 9 230 -62 1 1427 254 275 24 59 chr9 110466756 110466841 -13609331 - ID2 SINE ID 0 83 2 1 1427 275 271 139 9 chr9 110467409 110467517 -13608655 + ID_B1 SINE B4 3 124 -100 1 1427 994 157 91 24 chr9 110467520 110467729 -13608443 - URR1A DNA MER1_type -3 223 1 1 1427 420 227 31 0 chr9 110467729 110467825 -13608347 + ID_B1 SINE B4 126 224 0 1 1427 1547 47 0 5 chr9 110467870 110468062 -13608110 + B2_Mm1t SINE B2 2 192 -1 1 1427 892 148 194 28 chr9 110468176 110468356 -13607816 + B3 SINE B2 1 210 -6 1 1427 548 213 9 18 chr9 110468377 110468487 -13607685 + B1_Mur1 SINE Alu 9 117 -32 1 1427 190 51 77 0 chr9 110468749 110468788 -13607384 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1427 359 271 28 9 chr9 110469797 110469905 -13606267 + PB1D10 SINE Alu 1 110 -7 1 1427 273 194 161 0 chr9 110470595 110470657 -13605515 - RSINE1 SINE B4 -91 74 3 1 1427 375 311 93 37 chr9 110470661 110470875 -13605297 - L1M5 LINE L1 -432 5808 5583 1 1427 934 235 10 0 chr9 110470959 110471155 -13605017 - B3 SINE B2 -17 199 2 1 1427 630 183 133 30 chr9 110471620 110471755 -13604417 - B1_Mur3 SINE Alu 0 149 1 1 1427 380 235 12 0 chr9 110471757 110471842 -13604330 - PB1D9 SINE Alu -1 119 34 1 1427 304 224 56 40 chr9 110471910 110472002 -13604170 - PB1D10 SINE Alu -34 115 18 1 1427 970 116 127 0 chr9 110472708 110472881 -13603291 - B2_Mm2 SINE B2 0 195 1 1 1427 298 288 12 24 chr9 110472901 110472983 -13603189 + ID4_ SINE ID 1 81 -2 1 1427 27 0 0 0 chr9 110473014 110473041 -13603131 + AT_rich Low_complexity Low_complexity 1 27 0 1 1427 848 104 0 163 chr9 110473041 110473213 -13602959 - B1_Mm SINE Alu -1 146 3 1 1427 1026 106 105 6 chr9 110473332 110473503 -13602669 - B2_Mm2 SINE B2 -7 188 1 1 1427 882 172 29 168 chr9 110473505 110473714 -13602458 - B3 SINE B2 0 216 14 1 1427 322 174 70 28 chr9 110473654 110473725 -13602447 - ID4 SINE ID -9 74 1 1 1427 1050 86 0 0 chr9 110473778 110473917 -13602255 - B1_Mus1 SINE Alu 0 148 10 1 1427 279 273 223 15 chr9 110473928 110474058 -13602114 - RSINE1 SINE B4 -6 159 3 1 1427 387 0 0 0 chr9 110474142 110474185 -13601987 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1427 636 93 0 0 chr9 110474185 110474282 -13601890 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 1427 324 176 200 0 chr9 110474286 110474371 -13601801 - B1_Mm SINE Alu 0 147 46 1 1427 678 148 70 56 chr9 110475065 110475208 -13600964 - B1_Mus1 SINE Alu -2 146 2 1 1427 1309 86 21 26 chr9 110475490 110475682 -13600490 + B2_Mm1t SINE B2 1 191 -2 1 1427 22 35 0 0 chr9 110477195 110477224 -13598948 + AT_rich Low_complexity Low_complexity 1 29 0 1 1427 594 141 140 59 chr9 110477343 110477479 -13598693 + B1_Mus1 SINE Alu 1 147 -1 1 1427 212 103 51 0 chr9 110477534 110477573 -13598599 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1 1427 1225 115 0 11 chr9 110477573 110477758 -13598414 - B2_Mm2 SINE B2 -11 184 2 1 1427 31 0 0 0 chr9 110478834 110478865 -13597307 + AT_rich Low_complexity Low_complexity 1 31 0 1 1427 827 166 14 0 chr9 110480481 110480620 -13595552 + B1_Mur2 SINE Alu 1 141 -8 1 1427 287 24 24 0 chr9 110480761 110480802 -13595370 + B1_Mm SINE Alu 106 147 0 1 1427 243 152 0 0 chr9 110480980 110481026 -13595146 + T-rich Low_complexity Low_complexity 1 46 0 1 1427 604 124 24 81 chr9 110481027 110481150 -13595022 - B1_Mus1 SINE Alu 0 148 33 1 1427 237 227 78 26 chr9 110481082 110481159 -13595013 - 4.5SRNA scRNA scRNA -6 88 8 1 1427 180 0 0 0 chr9 110481225 110481245 -13594927 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1427 259 250 0 0 chr9 110481359 110481407 -13594765 - B1_Mur1 SINE Alu -10 139 92 1 1427 296 244 141 50 chr9 110482312 110482433 -13593739 + B1F SINE Alu 5 136 -13 1 1427 325 307 143 0 chr9 110482538 110482727 -13593445 - L1MC4 LINE L1 -982 7060 6845 1 1427 441 0 0 0 chr9 110482737 110482786 -13593386 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1427 383 298 96 30 chr9 110482804 110482939 -13593233 + RSINE1 SINE B4 22 165 0 1 1427 794 141 171 6 chr9 110483082 110483246 -13592926 - B2_Mm2 SINE B2 -3 192 2 1 1427 191 36 0 35 chr9 110483505 110483534 -13592638 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1427 1114 89 0 0 chr9 110483546 110483692 -13592480 - B1_Mus2 SINE Alu 0 147 2 1 1427 305 352 62 0 chr9 110483695 110483823 -13592349 - B1F2 SINE Alu 0 149 14 1 1427 647 176 93 22 chr9 110483896 110484035 -13592137 - B1_Mur4 SINE Alu -1 149 1 1 1427 21 0 0 0 chr9 110484193 110484214 -13591958 + AT_rich Low_complexity Low_complexity 1 21 0 1 1427 1237 21 0 0 chr9 110485161 110485301 -13590871 - B1_Mus2 SINE Alu -7 140 1 1 1427 1007 163 26 21 chr9 110485580 110485774 -13590398 - B2_Mm2 SINE B2 0 195 1 1 1427 558 112 228 111 chr9 110486076 110486247 -13589925 - B2_Mm2 SINE B2 -2 193 3 1 1427 347 138 204 11 chr9 110486419 110486507 -13589665 - B1_Mur1 SINE Alu -2 147 43 1 1427 233 228 0 0 chr9 110486713 110486770 -13589402 + T-rich Low_complexity Low_complexity 1 57 0 1 1427 1337 92 16 0 chr9 110486827 110487012 -13589160 - B2_Mm2 SINE B2 -6 189 2 1 1427 385 264 151 58 chr9 110487414 110487619 -13588553 - ID_B1 SINE B4 0 224 1 1 1427 385 265 49 76 chr9 110487729 110487913 -13588259 - B3A SINE B2 -18 180 2 1 1427 417 103 0 0 chr9 110487995 110488063 -13588109 + (T)n Simple_repeat Simple_repeat 1 68 0 1 1427 1089 68 0 0 chr9 110488074 110488207 -13587965 - B1_Mus2 SINE Alu -13 134 2 1 1427 279 236 73 36 chr9 110488266 110488376 -13587796 + PB1D10 SINE Alu 2 115 -2 1 1427 309 241 71 44 chr9 110488913 110489026 -13587146 + ID_B1 SINE B4 107 222 -2 1 1427 320 247 39 0 chr9 110489190 110489267 -13586905 - ID_B1 SINE B4 -1 223 144 1 1427 634 230 39 45 chr9 110490027 110490182 -13585990 + B3A SINE B2 3 156 -42 1 1427 240 111 0 0 chr9 110490991 110491036 -13585136 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1427 294 210 0 0 chr9 110491421 110491483 -13584689 - ID4_ SINE ID -9 74 13 1 1427 868 149 14 0 chr9 110491658 110491799 -13584373 - B1_Mur2 SINE Alu -2 147 5 1 1427 307 277 0 0 chr9 110492406 110492471 -13583701 + ID4_ SINE ID 8 72 -11 1 1427 317 250 13 16 chr9 110493201 110493304 -13582868 - ID4_ SINE ID -49 103 3 1 1427 329 239 554 7 chr9 110493330 110493469 -13582703 - B3 SINE B2 -1 215 1 1 1427 21 0 0 0 chr9 110493493 110493514 -13582658 + AT_rich Low_complexity Low_complexity 1 21 0 1 178 930 228 19 24 chr9 110493523 110493730 -13582442 - B3 SINE B2 -10 206 1 1 1428 655 191 137 0 chr9 110493852 110493983 -13582189 + B1_Mur3 SINE Alu 1 149 0 1 1428 965 111 126 23 chr9 110494463 110494638 -13581534 - B2_Mm1t SINE B2 0 193 1 1 1428 441 279 82 37 chr9 110495465 110495599 -13580573 + B1F2 SINE Alu 2 141 -8 1 1428 327 280 112 0 chr9 110495776 110495883 -13580289 - PB1D7 SINE Alu -1 119 1 1 1428 325 260 31 10 chr9 110495883 110495923 -13580249 - B4A SINE B4 -207 85 44 1 1428 248 333 0 24 chr9 110496166 110496249 -13579923 - ID4_ SINE ID 0 83 3 1 1428 394 283 43 11 chr9 110496267 110496360 -13579812 - B3A SINE B2 -36 162 67 1 1428 457 288 80 0 chr9 110497556 110497681 -13578491 - MLT1F LTR MaLR -80 468 334 1 1428 1355 66 5 32 chr9 110497681 110497870 -13578302 + B2_Mm1t SINE B2 1 184 -9 1 1428 1098 103 0 0 chr9 110497880 110498026 -13578146 + B1_Mm SINE Alu 2 147 0 1 1428 180 0 0 0 chr9 110498037 110498057 -13578115 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1428 1175 75 0 0 chr9 110498307 110498454 -13577718 - B1_Mus1 SINE Alu -1 147 1 1 1428 620 238 23 23 chr9 110498602 110498731 -13577441 + B3A SINE B2 1 129 -69 1 1428 996 105 13 187 chr9 110498875 110499110 -13577062 - B2_Mm2 SINE B2 -1 194 1 1 1428 441 252 0 18 chr9 110499236 110499345 -13576827 + PB1D10 SINE Alu 2 108 -9 1 1428 314 352 176 12 chr9 110499486 110499742 -13576430 - L2 LINE L2 -529 2890 2593 1 1428 461 90 0 0 chr9 110500516 110500583 -13575589 - B1_Mus1 SINE Alu -81 67 1 1 1428 345 205 0 57 chr9 110500583 110500610 -13575562 - ID SINE ID -144 80 59 2 1428 626 0 14 0 chr9 110501007 110501081 -13575091 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1428 286 327 48 0 chr9 110501205 110501309 -13574863 + B4 SINE B4 79 187 -105 4 1428 564 200 0 35 chr9 110501220 110501334 -13574838 + PB1D9 SINE Alu 10 119 -1 5 1428 876 66 157 0 chr9 110501417 110501538 -13574634 + B1_Mus2 SINE Alu 1 140 -7 6 1428 1170 90 96 6 chr9 110501840 110502018 -13574154 - B2_Mm2 SINE B2 0 195 2 7 1428 482 215 128 23 chr9 110502183 110502316 -13573856 + B1F2 SINE Alu 2 148 -1 8 1428 299 340 19 87 chr9 110502321 110502482 -13573690 + RSINE1 SINE B4 16 165 0 9 1428 543 211 0 60 chr9 110502944 110503060 -13573112 - B1_Mur4 SINE Alu -40 110 2 1 1428 291 310 0 89 chr9 110502950 110503074 -13573098 - ID_B1 SINE B4 -38 186 74 1 1428 255 218 0 0 chr9 110503074 110503129 -13573043 - ORR1C2 LTR MaLR -42 342 288 1 1428 1332 199 113 27 chr9 110503114 110503261 -13572911 - ORR1C2-int LTR MaLR -4 1576 1462 1 1428 1211 68 0 0 chr9 110503261 110503408 -13572764 + B1_Mm SINE Alu 1 147 0 1 1428 1332 194 157 38 chr9 110503408 110503719 -13572453 - ORR1C2-int LTR MaLR -48 1461 1096 1 1428 424 220 9 48 chr9 110503742 110503847 -13572325 - MLT1A LTR MaLR -254 120 20 1 1428 314 273 301 13 chr9 110503985 110504120 -13572052 - B3A SINE B2 -27 189 16 1 1428 1746 21 0 0 chr9 110504280 110504473 -13571699 - B2_Mm1a SINE B2 0 193 1 1 1428 516 326 91 37 chr9 110504956 110505198 -13570974 - B4 SINE B4 -30 262 8 1 1428 446 252 43 35 chr9 110505209 110505324 -13570848 - PB1D10 SINE Alu -1 116 1 1 1428 220 357 0 14 chr9 110505415 110505486 -13570686 - RSINE1 SINE B4 -1 164 95 1 1428 849 200 194 0 chr9 110505487 110505667 -13570505 - B3 SINE B2 0 216 2 2 1428 221 143 41 0 chr9 110505673 110505722 -13570450 + (TTGG)n Simple_repeat Simple_repeat 4 54 0 2 1428 180 0 0 0 chr9 110505908 110505928 -13570244 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1428 468 243 0 51 chr9 110505928 110506045 -13570127 + PB1D9 SINE Alu 1 111 -9 2 1428 194 0 39 0 chr9 110506050 110506076 -13570096 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1428 925 70 147 0 chr9 110506140 110506269 -13569903 - B1_Mus1 SINE Alu 0 148 1 2 1428 1039 90 0 0 chr9 110506321 110506466 -13569706 + B2_Mm2 SINE B2 2 146 -49 2 1428 599 231 58 0 chr9 110506856 110506977 -13569195 + B3 SINE B2 2 129 -87 2 1428 216 242 15 29 chr9 110507424 110507492 -13568680 + B3A SINE B2 10 76 -122 2 1428 292 240 173 39 chr9 110507704 110507808 -13568364 + PB1D7 SINE Alu 1 118 -2 2 1428 271 310 74 20 chr9 110507824 110507972 -13568200 + RSINE1 SINE B4 5 160 -5 3 1428 333 185 0 0 chr9 110508260 110508325 -13567847 + T-rich Low_complexity Low_complexity 1 65 0 3 1428 648 122 33 42 chr9 110508327 110508447 -13567725 - PB1D9 SINE Alu 0 120 2 3 1428 437 70 14 40 chr9 110508533 110508607 -13567565 - B1_Mur4 SINE Alu -1 149 78 3 1428 315 204 114 0 chr9 110508633 110508721 -13567451 - L1MEf LINE L1 -4569 1631 1534 3 1428 650 208 108 0 chr9 110508759 110508889 -13567283 + B1_Mur3 SINE Alu 2 145 -4 3 1428 1116 80 0 0 chr9 110508896 110509034 -13567138 + B1_Mus2 SINE Alu 1 138 -9 3 1428 388 208 445 8 chr9 110509034 110509194 -13566978 - L1MC LINE L1 -529 5804 5577 3 1428 832 247 110 5 chr9 110509210 110509401 -13566771 - B3 SINE B2 -5 211 1 3 1428 672 200 8 0 chr9 110509446 110509576 -13566596 - B1_Mur2 SINE Alu -5 144 14 3 1428 336 248 59 42 chr9 110509611 110509729 -13566443 - PB1D7 SINE Alu 0 120 1 4 1428 406 320 213 30 chr9 110509756 110510132 -13566040 - L1MEf LINE L1 -4879 1321 874 3 1428 571 223 143 23 chr9 110510132 110510265 -13565907 - B1_Mur2 SINE Alu 0 149 1 4 1428 406 320 213 30 chr9 110510265 110510320 -13565852 - L1MEf LINE L1 -5327 873 811 3 1428 1425 68 28 0 chr9 110510829 110511005 -13565167 + B2_Mm2 SINE B2 1 181 -14 4 1428 1125 116 0 0 chr9 110511286 110511433 -13564739 + B1_Mus1 SINE Alu 2 148 0 4 1428 817 26 259 0 chr9 110511723 110511839 -13564333 + B1_Mus2 SINE Alu 2 147 0 4 1428 180 0 0 0 chr9 110511851 110511871 -13564301 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1428 186 189 0 0 chr9 110513248 110513285 -13562887 + (CGTG)n Simple_repeat Simple_repeat 4 40 0 4 1428 180 0 0 0 chr9 110513728 110513748 -13562424 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1428 1221 22 0 0 chr9 110514391 110514528 -13561644 + B1_Mm SINE Alu 2 138 -9 4 1428 183 42 0 0 chr9 110514528 110514552 -13561620 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1428 1190 196 0 5 chr9 110514681 110514891 -13561281 - B3 SINE B2 -6 210 2 5 1428 228 163 0 0 chr9 110514892 110514935 -13561237 + CT-rich Low_complexity Low_complexity 2 44 0 5 1428 1058 195 15 5 chr9 110514978 110515174 -13560998 - ID_B1 SINE B4 -26 198 1 5 1428 1190 137 79 47 chr9 110515211 110515426 -13560746 - URR1B DNA MER1_type 0 225 4 5 1428 590 279 0 28 chr9 110515571 110515715 -13560457 - B1F SINE Alu -5 144 5 5 1428 232 195 0 0 chr9 110515808 110515856 -13560316 + PB1D7 SINE Alu 12 59 -90 5 1428 557 257 88 18 chr9 110516168 110516338 -13559834 + B3A SINE B2 1 182 -16 5 1428 642 188 74 15 chr9 110516381 110516516 -13559656 + B1_Mur2 SINE Alu 1 143 -6 5 1428 21 36 0 0 chr9 110516568 110516596 -13559576 + AT_rich Low_complexity Low_complexity 1 28 0 5 1428 1192 5 55 0 chr9 110518954 110519161 -13557011 + (CCCTG)n Simple_repeat Simple_repeat 1 218 0 5 1428 954 52 0 50 chr9 110519161 110519316 -13556856 + (CCTG)n Simple_repeat Simple_repeat 4 150 0 6 1428 672 0 106 19 chr9 110519316 110519477 -13556695 + (CCCTG)n Simple_repeat Simple_repeat 4 178 0 6 1428 954 52 0 50 chr9 110519477 110519503 -13556669 + (CCTG)n Simple_repeat Simple_repeat 3 27 0 6 1428 280 73 0 0 chr9 110519538 110519579 -13556593 - ID SINE ID -181 43 3 6 1428 1424 40 11 17 chr9 110521805 110521981 -13554191 + B2_Mm2 SINE B2 2 176 -19 6 1428 326 294 91 16 chr9 110522106 110522227 -13553945 - MER2 DNA MER2_type -64 281 152 6 1428 358 230 95 0 chr9 110523011 110523085 -13553087 - ID4 SINE ID 0 83 3 6 1428 1220 54 0 0 chr9 110523123 110523271 -13552901 - B1_Mus1 SINE Alu 0 148 1 6 1428 207 0 0 0 chr9 110524243 110524266 -13551906 + (TGGGGG)n Simple_repeat Simple_repeat 4 26 0 6 1428 299 219 27 27 chr9 110524889 110524964 -13551208 + RSINE1 SINE B4 3 77 -88 6 1428 512 293 24 18 chr9 110524981 110525148 -13551024 + B3A SINE B2 16 183 -15 7 1428 183 42 0 0 chr9 110531584 110531608 -13544564 + (CCCTG)n Simple_repeat Simple_repeat 3 26 0 7 1428 222 150 0 24 chr9 110533707 110533748 -13542424 - B1_Mus1 SINE Alu -108 40 1 7 1428 298 208 0 0 chr9 110535933 110535986 -13540186 + B3 SINE B2 1 53 -163 7 1428 261 0 0 0 chr9 110537083 110537112 -13539060 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1428 299 224 0 0 chr9 110537113 110537171 -13539001 - ID4_ SINE ID 0 83 26 7 1428 198 274 21 97 chr9 110542944 110543037 -13533135 - MIR3 SINE MIR -9 199 114 7 1428 212 0 36 0 chr9 110546299 110546327 -13529845 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 7 1428 680 207 79 6 chr9 110548469 110548634 -13527538 - URR1B DNA MER1_type 0 225 49 7 1428 222 277 35 26 chr9 110548797 110548912 -13527260 + (TATG)n Simple_repeat Simple_repeat 1 116 0 7 1428 290 206 55 0 chr9 110548812 110548885 -13527287 + (CATG)n Simple_repeat Simple_repeat 1 77 0 8 1428 323 316 106 35 chr9 110548938 110549079 -13527093 - B4 SINE B4 -135 157 7 8 1428 370 183 26 111 chr9 110549257 110549374 -13526798 - B1_Mm SINE Alu -20 127 21 8 1428 517 109 20 71 chr9 110549276 110549375 -13526797 - PB1D9 SINE Alu -7 113 20 8 1428 264 100 0 0 chr9 110549385 110549425 -13526747 + (CCA)n Simple_repeat Simple_repeat 1 40 0 8 1428 313 227 180 50 chr9 110549425 110549450 -13526722 - ID SINE ID -137 87 65 8 1428 723 270 97 0 chr9 110550010 110550236 -13525936 + B4A SINE B4 2 249 -43 8 1428 218 311 43 32 chr9 110550409 110550421 -13525751 - ID_B1 SINE B4 -130 94 1 8 1428 590 86 0 0 chr9 110550421 110550502 -13525670 - B3 SINE B2 -135 81 1 8 1428 194 62 31 0 chr9 110551331 110551363 -13524809 + (CACCAT)n Simple_repeat Simple_repeat 3 35 0 8 1428 486 244 11 18 chr9 110551720 110551846 -13524326 - B1_Mur1 SINE Alu -21 128 1 8 1428 792 157 90 0 chr9 110552709 110552843 -13523329 + B1_Mus1 SINE Alu 1 146 -2 9 1428 327 305 152 69 chr9 110552894 110553067 -13523105 + B4A SINE B4 6 195 -97 9 1428 360 258 10 61 chr9 110553067 110553166 -13523006 + RSINE1 SINE B4 2 95 -70 9 1428 532 223 0 0 chr9 110553146 110553249 -13522923 + B1_Mus2 SINE Alu 32 134 -13 9 1428 532 268 16 0 chr9 110553272 110553395 -13522777 + B3 SINE B2 1 125 -91 9 1428 446 187 11 11 chr9 110553844 110553936 -13522236 - PB1D9 SINE Alu -7 113 22 9 1428 229 273 53 47 chr9 110553937 110554087 -13522085 - RMER17D LTR ERVK -503 386 236 9 1428 465 256 8 25 chr9 110554690 110554810 -13521362 - PB1D7 SINE Alu 0 120 3 9 1428 220 241 37 0 chr9 110556988 110557042 -13519130 - MIR SINE MIR -4 258 203 9 1428 216 218 72 49 chr9 110557272 110557360 -13518812 - MIRb SINE MIR -99 169 80 9 1428 960 137 7 27 chr9 110557875 110558025 -13518147 - B1_Mus2 SINE Alu 0 147 1 1 1428 1233 41 7 0 chr9 110558118 110558263 -13517909 - B1_Mm SINE Alu -1 146 1 1 1428 506 271 0 0 chr9 110558554 110558661 -13517511 - PB1D10 SINE Alu -10 107 1 1 1428 207 93 0 65 chr9 110560055 110560101 -13516071 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 1 1428 237 33 0 0 chr9 110560178 110560208 -13515964 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1428 381 244 33 100 chr9 110560439 110560589 -13515583 - B1F2 SINE Alu -8 141 2 1 1428 384 239 22 0 chr9 110560499 110560591 -13515581 - B4 SINE B4 -114 178 85 1 1428 464 298 62 77 chr9 110560591 110560683 -13515489 - L1M4 LINE L1 -1400 4746 4659 1 1428 467 209 61 35 chr9 110560683 110560797 -13515375 + PB1D10 SINE Alu 1 117 0 1 1428 464 298 62 77 chr9 110560797 110560977 -13515195 - L1M4 LINE L1 -1488 4658 4478 1 1428 221 0 0 33 chr9 110561004 110561034 -13515138 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1428 357 125 0 0 chr9 110561099 110561155 -13515017 + (T)n Simple_repeat Simple_repeat 1 56 0 1 1428 984 105 0 0 chr9 110561155 110561298 -13514874 - B1_Mus1 SINE Alu 0 148 6 1 1428 21 36 0 0 chr9 110561329 110561357 -13514815 + AT_rich Low_complexity Low_complexity 1 28 0 1 1428 1213 237 208 25 chr9 110561473 110561953 -13514219 - RMER4B LTR ERVK -17 568 1 1 1428 508 316 31 127 chr9 110561991 110562098 -13514074 - B4A SINE B4 0 292 208 1 1428 499 292 196 8 chr9 110562098 110562343 -13513829 - B4A SINE B4 0 292 2 1 1428 508 316 31 127 chr9 110562343 110562558 -13513614 - B4A SINE B4 -85 207 1 1 1428 239 273 26 43 chr9 110562558 110562663 -13513509 - BC1_Mm scRNA scRNA -40 112 10 1 1428 189 0 0 0 chr9 110562702 110562723 -13513449 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1428 301 237 53 0 chr9 110562723 110562799 -13513373 - L1M4 LINE L1 -2704 3442 3363 1 1428 923 192 64 29 chr9 110562949 110563153 -13513019 + B3 SINE B2 2 212 -4 1 1428 379 257 36 9 chr9 110563275 110563385 -13512787 - PB1D9 SINE Alu -1 119 7 1 1428 189 0 0 0 chr9 110563476 110563497 -13512675 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1428 240 304 60 60 chr9 110563858 110563991 -13512181 - MIRc SINE MIR -62 206 74 1 1428 416 179 101 12 chr9 110564025 110564151 -13512021 - B1_Mur4 SINE Alu -14 135 1 1 1428 239 220 65 157 chr9 110564064 110564172 -13512000 - MT2B LTR ERVL -351 250 153 1 1428 180 0 0 0 chr9 110564174 110564194 -13511978 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1428 423 236 38 68 chr9 110564262 110564394 -13511778 - ID_B1 SINE B4 -11 213 86 1 1428 230 176 20 0 chr9 110564395 110564446 -13511726 + CT-rich Low_complexity Low_complexity 1 52 0 1 1428 219 275 29 0 chr9 110564533 110564602 -13511570 - ID4_ SINE ID -1 82 12 1 1428 261 319 102 41 chr9 110564669 110564816 -13511356 + B4A SINE B4 3 158 -134 1 1428 214 208 51 89 chr9 110564903 110564982 -13511190 - ID_B1 SINE B4 -62 162 87 1 1428 854 233 47 37 chr9 110565125 110565315 -13510857 + B3 SINE B2 1 197 -19 1 1428 474 18 0 0 chr9 110565315 110565370 -13510802 + (TAAAA)n Simple_repeat Simple_repeat 5 59 0 1 1428 854 233 47 37 chr9 110565370 110565393 -13510779 + B3 SINE B2 198 216 0 1 1428 229 337 43 70 chr9 110565506 110565691 -13510481 - L1MB4 LINE L1 -88 6092 5913 1 1428 252 0 0 0 chr9 110565789 110565817 -13510355 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1 1428 189 0 0 0 chr9 110565817 110565838 -13510334 + (TTA)n Simple_repeat Simple_repeat 3 23 0 1 1428 389 187 42 52 chr9 110565849 110565945 -13510227 - RSINE1 SINE B4 -39 126 32 1 1428 180 158 0 0 chr9 110566018 110566056 -13510116 + T-rich Low_complexity Low_complexity 2 39 0 1 1428 2302 122 0 9 chr9 110566075 110566405 -13509767 + ORR1A2 LTR MaLR 1 327 0 1 1428 239 279 0 0 chr9 110566572 110566633 -13509539 - L1MB4 LINE L1 -501 5667 5607 1 1428 267 328 55 47 chr9 110566670 110566798 -13509374 - B1F SINE Alu -3 146 18 1 1428 413 148 0 12 chr9 110566871 110566953 -13509219 + CT-rich Low_complexity Low_complexity 2 82 0 1 1428 447 251 141 35 chr9 110566953 110567212 -13508960 - L1MB4 LINE L1 -688 5495 5199 1 1428 243 0 0 0 chr9 110567212 110567239 -13508933 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1428 369 345 115 0 chr9 110567239 110567338 -13508834 - L1MB4 LINE L1 -948 5198 5095 1 1428 668 255 52 0 chr9 110567353 110567529 -13508643 - B3 SINE B2 0 198 3 1 1428 265 278 14 7 chr9 110567693 110567767 -13508405 - PB1D10 SINE Alu -44 76 1 1 1428 24 32 0 0 chr9 110567816 110567847 -13508325 + AT_rich Low_complexity Low_complexity 1 31 0 1 1428 557 285 90 0 chr9 110567852 110567996 -13508176 - RSINE1 SINE B4 0 165 9 1 1428 315 71 0 0 chr9 110568091 110568133 -13508039 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1428 387 60 0 0 chr9 110569625 110569675 -13506497 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1 1428 486 254 156 11 chr9 110570074 110570253 -13505919 + MER3 DNA MER1_type 1 205 -4 1 1428 1556 68 0 5 chr9 110570835 110571027 -13505145 + B2_Mm2 SINE B2 2 192 -3 1 1428 384 364 31 22 chr9 110571215 110571437 -13504735 + MIRb SINE MIR 13 236 -32 1 1428 636 246 50 60 chr9 110571642 110571841 -13504331 + B3A SINE B2 2 198 0 1 1428 239 79 0 26 chr9 110571854 110571893 -13504279 + (GGAAA)n Simple_repeat Simple_repeat 3 40 0 1 1428 471 289 52 0 chr9 110572597 110572732 -13503440 + ID_B1 SINE B4 3 144 -80 1 1428 287 292 21 0 chr9 110573140 110573236 -13502936 - B1F1 SINE Alu -11 138 41 1 1428 369 222 59 20 chr9 110573302 110573403 -13502769 - PB1D10 SINE Alu -40 109 5 1 1428 384 321 35 49 chr9 110573701 110573845 -13502327 - B1F2 SINE Alu -7 142 1 1 1428 732 104 0 0 chr9 110574099 110574205 -13501967 - B2_Mm2 SINE B2 -88 107 2 1 1428 892 73 122 0 chr9 110574240 110574363 -13501809 - B1_Mus1 SINE Alu -9 139 2 1 1428 727 232 91 27 chr9 110574391 110574577 -13501595 - B3A SINE B2 0 198 1 1 1428 217 89 44 0 chr9 110574626 110574671 -13501501 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1428 531 269 67 7 chr9 110574671 110574806 -13501366 - B1_Mur2 SINE Alu -6 143 1 1 1428 652 282 63 24 chr9 110574824 110575031 -13501141 - ID_B1 SINE B4 -9 215 1 1 1428 258 254 0 53 chr9 110575060 110575135 -13501037 - B4 SINE B4 -86 206 136 1 1428 333 225 22 33 chr9 110575165 110575257 -13500915 + ID_B1 SINE B4 110 200 -24 1 1428 226 277 18 82 chr9 110576348 110576458 -13499714 - RNLTR23 LTR ERVK 0 642 540 1 1428 276 248 176 28 chr9 110577011 110577119 -13499053 - PB1 SINE Alu -2 125 2 1 1428 299 172 203 0 chr9 110577059 110577123 -13499049 - ID_B1 SINE B4 -69 155 79 1 1428 232 338 68 40 chr9 110577222 110577370 -13498802 - MIRm SINE MIR -56 220 69 1 1428 765 194 8 0 chr9 110578270 110578404 -13497768 + B1_Mur1 SINE Alu 8 142 -7 1 1428 365 161 28 123 chr9 110578407 110578513 -13497659 - B1_Mur2 SINE Alu -12 137 42 1 1428 735 224 98 22 chr9 110578528 110578711 -13497461 - B3A SINE B2 -1 197 1 1 1428 340 287 56 24 chr9 110578756 110578881 -13497291 - ID_B1 SINE B4 -16 208 80 1 1428 1230 61 0 0 chr9 110579730 110579878 -13496294 + B1_Mus1 SINE Alu 1 148 0 1 1428 407 0 57 0 chr9 110579878 110579931 -13496241 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 1 1428 2104 173 94 10 chr9 110580609 110581089 -13495083 + RLTR28 LTR ERVL 1 520 -4 1 1428 234 296 0 0 chr9 110581355 110581409 -13494763 + B1_Mur4 SINE Alu 3 56 -94 1 1428 1651 209 75 19 chr9 110581419 110581888 -13494284 + RLTR11A2 LTR ERVK 19 513 -14 1 1428 586 114 0 0 chr9 110581930 110582018 -13494154 + B1_Mus2 SINE Alu 52 139 -8 1 1428 255 256 88 25 chr9 110582019 110582099 -13494073 - RSINE1 SINE B4 -64 101 17 1 1428 252 0 0 0 chr9 110582116 110582144 -13494028 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 1 1428 370 250 35 26 chr9 110582149 110582264 -13493908 - PB1D10 SINE Alu -1 116 1 1 1428 602 285 19 0 chr9 110582264 110582334 -13493838 - ID SINE ID -143 81 9 1 1428 219 36 0 0 chr9 110582345 110582373 -13493799 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1428 2518 118 135 88 chr9 110582934 110583036 -13493136 + RMER4B LTR ERVK 3 62 -523 1 1428 1435 6 0 0 chr9 110583036 110583234 -13492938 - L1Md_A LINE L1 0 6582 6413 1 1428 2518 118 135 88 chr9 110583234 110583687 -13492485 + RMER4B LTR ERVK 63 584 -1 1 1428 1223 55 0 0 chr9 110584235 110584381 -13491791 - B1_Mus2 SINE Alu -1 146 1 1 1428 250 257 40 27 chr9 110584792 110584896 -13491276 + B1_Mur1 SINE Alu 23 129 -20 1 1428 336 361 30 8 chr9 110585012 110585143 -13491029 + MIR SINE MIR 63 196 -66 1 1428 417 66 0 0 chr9 110585438 110585499 -13490673 + (T)n Simple_repeat Simple_repeat 1 61 0 1 1428 1223 55 0 14 chr9 110585499 110585647 -13490525 - B1_Mm SINE Alu 0 147 2 1 1428 214 307 69 0 chr9 110587045 110587146 -13489026 + L2 LINE L2 2672 2779 -640 1 1428 705 231 19 12 chr9 110587384 110587546 -13488626 - B3 SINE B2 -52 164 2 1 1428 246 293 160 10 chr9 110587802 110587902 -13488270 - MIR SINE MIR -71 191 77 1 1428 559 295 79 0 chr9 110588652 110588791 -13487381 - RSINE1 SINE B4 -13 152 3 1 1428 272 310 46 0 chr9 110590020 110590107 -13486065 + L1M5 LINE L1 3305 3395 -2751 1 1428 467 198 11 0 chr9 110590149 110590238 -13485934 + B4A SINE B4 6 95 -197 1 1428 420 241 16 57 chr9 110590238 110590361 -13485811 + RSINE1 SINE B4 3 120 -45 1 1428 585 268 21 7 chr9 110590415 110590564 -13485608 + B4 SINE B4 81 232 -60 1 1428 910 267 10 0 chr9 110590564 110590770 -13485402 + B3 SINE B2 1 208 -8 1 1428 471 297 86 15 chr9 110590770 110590818 -13485354 + B4A SINE B4 233 291 -1 1 1428 322 275 14 0 chr9 110590845 110590914 -13485258 + B4 SINE B4 221 290 -2 1 1428 447 293 81 77 chr9 110590951 110591118 -13485054 - RCHARR1 DNA MER1_type -479 495 323 1 1428 1646 43 0 0 chr9 110591118 110591306 -13484866 + B2_Mm1a SINE B2 1 188 -5 2 1428 447 293 81 77 chr9 110591306 110591397 -13484775 - RCHARR1 DNA MER1_type -652 322 236 1 1428 461 202 0 96 chr9 110592907 110593022 -13483150 + PB1D9 SINE Alu 17 120 0 2 1428 512 211 61 139 chr9 110593956 110594121 -13482051 + RSINE1 SINE B4 2 153 -12 2 1428 251 54 27 0 chr9 110594126 110594163 -13482009 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1428 198 103 0 0 chr9 110594519 110594548 -13481624 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1428 591 148 45 36 chr9 110594556 110594668 -13481504 - B1_Mur2 SINE Alu -8 141 29 2 1428 399 73 0 0 chr9 110594901 110594956 -13481216 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1428 998 162 0 11 chr9 110595117 110595292 -13480880 - URR1B DNA MER1_type 0 225 53 2 1428 330 67 0 0 chr9 110595452 110595497 -13480675 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 2 1428 1045 76 82 0 chr9 110595858 110596016 -13480156 - B2_Mm2 SINE B2 -24 171 1 2 1428 319 352 18 57 chr9 110598021 110598199 -13477973 + MIRc SINE MIR 1 170 -98 2 1428 400 192 37 0 chr9 110598670 110598763 -13477409 + B1F SINE Alu 2 102 -18 2 1428 272 217 0 92 chr9 110598794 110598870 -13477302 - L1M5 LINE L1 -1505 4641 4573 2 1428 186 250 91 13 chr9 110599967 110600044 -13476128 - MIR SINE MIR -92 116 34 2 1428 449 276 152 25 chr9 110600400 110600597 -13475575 - RMER15 LTR ERVL -13 562 341 2 1428 189 0 0 0 chr9 110600862 110600883 -13475289 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1428 1276 34 7 0 chr9 110600915 110601062 -13475110 - B1_Mus1 SINE Alu 0 148 1 2 1428 397 197 194 16 chr9 110601062 110601185 -13474987 - B1_Mur1 SINE Alu -1 148 3 2 1428 417 20 0 0 chr9 110601525 110601575 -13474597 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1428 240 242 61 0 chr9 110601575 110601641 -13474531 - ID4_ SINE ID -13 70 1 2 1428 297 0 0 0 chr9 110601642 110601675 -13474497 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1428 1607 26 5 16 chr9 110601675 110601869 -13474303 - B2_Mm1a SINE B2 0 193 2 2 1428 787 177 78 88 chr9 110601906 110602123 -13474049 - B3 SINE B2 0 216 2 2 1428 334 213 27 0 chr9 110602309 110602384 -13473788 + PB1D7 SINE Alu 5 81 -39 2 1428 695 218 48 48 chr9 110602960 110603148 -13473024 + B3A SINE B2 1 188 -10 2 1428 746 160 22 22 chr9 110606370 110606504 -13469668 + B1_Mur4 SINE Alu 7 140 -10 2 1428 285 29 0 0 chr9 110606505 110606539 -13469633 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 2 1428 228 325 35 0 chr9 110606653 110606756 -13469416 - PB1D7 SINE Alu -2 118 7 2 1428 573 277 71 19 chr9 110607064 110607274 -13468898 - ID_B1 SINE B4 -1 223 3 2 1428 708 270 55 5 chr9 110607289 110607490 -13468682 - B3 SINE B2 -4 212 2 2 1428 308 228 37 37 chr9 110607534 110607616 -13468556 + B1F2 SINE Alu 2 83 -66 2 1428 1717 21 0 0 chr9 110607616 110607807 -13468365 + B2_Mm1a SINE B2 3 193 0 2 1428 1610 16 38 0 chr9 110607819 110608004 -13468168 + B2_Mm1a SINE B2 2 193 0 2 1428 231 299 83 9 chr9 110608106 110608214 -13467958 + PB1D9 SINE Alu 5 120 0 2 1428 435 200 283 0 chr9 110608225 110608345 -13467827 + RSINE1 SINE B4 12 165 0 2 1428 558 124 0 0 chr9 110608347 110608436 -13467736 + (TAGG)n Simple_repeat Simple_repeat 2 90 0 2 1428 408 88 0 0 chr9 110608436 110608492 -13467680 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 2 1428 291 321 94 0 chr9 110608551 110608657 -13467515 - PB1D10 SINE Alu -1 116 1 2 1428 226 257 111 28 chr9 110608954 110609062 -13467110 - L1MEg LINE L1 -5726 358 242 2 1428 270 115 0 0 chr9 110610406 110610458 -13465714 + (TCTG)n Simple_repeat Simple_repeat 2 53 0 2 1428 216 0 0 0 chr9 110610458 110610482 -13465690 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1428 210 265 0 0 chr9 110610758 110610807 -13465365 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1428 588 202 145 15 chr9 110611395 110611526 -13464646 - B1_Mur2 SINE Alu -1 148 1 2 1428 1278 92 38 0 chr9 110611544 110611729 -13464443 - B2_Mm2 SINE B2 -3 192 1 2 1428 7958 120 191 21 chr9 110614760 110614991 -13461181 - RLTR22_Mur LTR ERVK 0 1848 1610 2 1428 1448 80 5 5 chr9 110614991 110615179 -13460993 + B2_Mm2 SINE B2 2 189 -6 2 1428 7958 120 191 21 chr9 110615179 110616374 -13459798 - RLTR22_Mur LTR ERVK -239 1609 170 2 1428 357 43 0 0 chr9 110616374 110616421 -13459751 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1428 7958 120 191 21 chr9 110616421 110616573 -13459599 - RLTR22_Mur LTR ERVK -1679 169 3 2 1428 353 279 44 52 chr9 110616754 110616890 -13459282 - YREP_Mm Unknown Unknown -1489 323 189 2 1428 445 203 98 30 chr9 110616773 110616905 -13459267 + B1F1 SINE Alu 9 149 0 2 1428 583 148 59 34 chr9 110616787 110616906 -13459266 + ID_B1 SINE B4 103 224 0 2 1428 302 309 35 121 chr9 110617350 110617368 -13458804 + B4 SINE B4 69 176 -116 2 1428 866 142 13 7 chr9 110617368 110617517 -13458655 + B1_Mur4 SINE Alu 1 150 0 2 1428 239 246 148 0 chr9 110617571 110617632 -13458540 + PB1D10 SINE Alu 37 106 -11 2 1428 278 364 30 0 chr9 110617729 110617828 -13458344 + ID_B1 SINE B4 115 216 -8 2 1428 240 224 29 15 chr9 110617847 110617915 -13458257 + B4 SINE B4 8 76 -216 2 1428 589 146 48 0 chr9 110618068 110618171 -13458001 - B3 SINE B2 -24 192 85 2 1428 334 185 185 0 chr9 110618319 110618411 -13457761 + PB1D7 SINE Alu 9 117 -3 2 1428 304 226 204 19 chr9 110619121 110619229 -13456943 + RSINE1 SINE B4 3 130 -35 2 1428 189 0 0 0 chr9 110619236 110619257 -13456915 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 1428 300 27 0 0 chr9 110619257 110619293 -13456879 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1428 423 0 0 0 chr9 110619768 110619815 -13456357 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1428 835 269 49 5 chr9 110620578 110620802 -13455370 - MER102b DNA MER1_type -103 238 5 2 1428 401 87 0 42 chr9 110620808 110620880 -13455292 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1428 316 333 0 7 chr9 110620937 110621079 -13455093 + (CA)n Simple_repeat Simple_repeat 2 142 0 2 1428 1365 71 49 0 chr9 110621170 110621354 -13454818 + B2_Mm2 SINE B2 3 195 0 2 1428 217 293 60 12 chr9 110621813 110621896 -13454276 - MIRc SINE MIR -137 131 45 2 1428 270 0 0 0 chr9 110623117 110623147 -13453025 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1428 892 238 50 18 chr9 110624201 110624438 -13451734 - ID_B1 SINE B4 -50 242 2 2 1428 192 152 0 0 chr9 110624623 110624656 -13451516 + T-rich Low_complexity Low_complexity 1 33 0 2 1429 269 298 11 50 chr9 110625553 110625733 -13450439 + (CACCC)n Simple_repeat Simple_repeat 4 176 0 2 1429 276 174 5 96 chr9 110625708 110625905 -13450267 + CT-rich Low_complexity Low_complexity 1 179 0 2 1429 240 333 36 6 chr9 110625915 110626081 -13450091 + (CACCC)n Simple_repeat Simple_repeat 5 175 0 2 1429 216 0 0 0 chr9 110630846 110630870 -13445302 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1429 302 138 0 73 chr9 110630870 110630940 -13445232 - B1_Mur4 SINE Alu -13 107 43 2 1429 28 29 0 0 chr9 110635266 110635301 -13440871 + GC_rich Low_complexity Low_complexity 1 35 0 2 1429 252 390 0 0 chr9 110636028 110636151 -13440021 + (CCA)n Simple_repeat Simple_repeat 2 124 0 2 1429 307 343 20 87 chr9 110636161 110636356 -13439816 + HAL1-2a_MD LINE L1 2350 2531 -493 2 1429 201 129 0 0 chr9 110637165 110637196 -13438976 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 2 1429 297 0 0 0 chr9 110639192 110639225 -13436947 + (CAGC)n Simple_repeat Simple_repeat 4 36 0 2 1429 238 304 13 0 chr9 110639776 110639855 -13436317 + L1M5 LINE L1 5268 5347 -799 2 1429 328 281 58 29 chr9 110639909 110640151 -13436021 + L1M5 LINE L1 5420 5668 -456 2 1429 279 79 0 0 chr9 110640217 110640255 -13435917 + (CACG)n Simple_repeat Simple_repeat 1 38 0 2 1429 309 221 0 72 chr9 110640255 110640338 -13435834 + HAL1-3A_ME LINE L1 1975 2051 -807 2 1429 1710 11 16 0 chr9 110640421 110640611 -13435561 + B2_Mm1a SINE B2 1 193 0 2 1429 992 227 24 5 chr9 110640621 110640829 -13435343 + B3 SINE B2 5 216 0 2 1429 683 251 15 50 chr9 110640838 110641039 -13435133 + B3A SINE B2 1 194 -4 2 1429 247 227 38 51 chr9 110641354 110641433 -13434739 + B4A SINE B4 10 87 -205 2 1429 323 258 151 0 chr9 110641967 110642060 -13434112 + RSINE1 SINE B4 3 109 -56 2 1429 229 341 0 12 chr9 110642983 110643069 -13433103 + MIR SINE MIR 154 238 -24 2 1429 215 237 153 10 chr9 110643508 110643606 -13432566 - MIR SINE MIR -61 147 36 2 1429 27 96 0 0 chr9 110644882 110644965 -13431207 + GC_rich Low_complexity Low_complexity 1 83 0 2 1429 27 0 0 0 chr9 110645039 110645066 -13431106 + GC_rich Low_complexity Low_complexity 1 27 0 2 1429 32 43 0 0 chr9 110645121 110645167 -13431005 + GC_rich Low_complexity Low_complexity 1 46 0 2 1429 195 100 0 0 chr9 110645168 110645198 -13430974 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2 1429 225 272 15 0 chr9 110646168 110646256 -13429916 + C-rich Low_complexity Low_complexity 1 89 0 2 1429 291 342 38 44 chr9 110647214 110647373 -13428799 + MIRb SINE MIR 65 222 -46 2 1429 432 233 108 43 chr9 110648020 110648159 -13428013 + B1_Mur1 SINE Alu 2 149 0 2 1429 246 292 14 0 chr9 110650046 110650118 -13426054 + PB1D7 SINE Alu 41 113 -7 2 1429 356 224 213 39 chr9 110650132 110650287 -13425885 + B3A SINE B2 8 194 -4 2 1429 722 259 78 24 chr9 110650290 110650496 -13425676 + ID_B1 SINE B4 2 218 -6 2 1429 286 262 0 62 chr9 110650510 110650575 -13425597 + RSINE1 SINE B4 15 75 -90 2 1429 306 0 0 0 chr9 110650576 110650610 -13425562 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1429 394 311 7 57 chr9 110651324 110651464 -13424708 - ID_B1 SINE B4 0 224 92 3 1429 373 256 6 0 chr9 110651490 110651584 -13424588 - PB1D10 SINE Alu -52 98 1 3 1429 225 286 65 89 chr9 110651584 110651613 -13424559 - MT2B2 LTR ERVL -334 250 131 3 1429 181 279 74 25 chr9 110651635 110651716 -13424456 - MIRm SINE MIR -119 157 73 3 1429 459 0 0 0 chr9 110653184 110653235 -13422937 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1429 207 69 0 0 chr9 110655264 110655293 -13420879 + (CAGAGA)n Simple_repeat Simple_repeat 5 33 0 3 1429 698 275 16 22 chr9 110655301 110655483 -13420689 - B3A SINE B2 -16 182 2 3 1429 23 33 0 0 chr9 110656214 110656244 -13419928 + GC_rich Low_complexity Low_complexity 1 30 0 3 1429 417 20 0 0 chr9 110656662 110656712 -13419460 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1429 308 209 0 11 chr9 110657011 110657098 -13419074 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 1429 333 102 0 0 chr9 110657310 110657369 -13418803 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1429 526 282 7 27 chr9 110657695 110657841 -13418331 - ID_B1 SINE B4 -1 223 81 3 1429 22 0 0 0 chr9 110657841 110657863 -13418309 + AT_rich Low_complexity Low_complexity 1 22 0 3 1429 933 189 74 55 chr9 110657863 110658065 -13418107 - B3 SINE B2 -10 206 1 3 1429 1263 140 0 15 chr9 110659498 110659701 -13416471 + B3 SINE B2 6 205 -11 3 1429 444 19 0 0 chr9 110659718 110659771 -13416401 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1429 621 272 115 39 chr9 110659833 110660093 -13416079 - B4 SINE B4 -11 281 2 3 1429 311 302 103 82 chr9 110662243 110662427 -13413745 - B3 SINE B2 0 216 6 3 1429 209 184 0 0 chr9 110662427 110662465 -13413707 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 1429 784 188 0 0 chr9 110662543 110662681 -13413491 - B1_Mus1 SINE Alu 0 148 11 3 1429 249 297 44 19 chr9 110662704 110662813 -13413359 - B1F2 SINE Alu 0 117 10 3 1429 387 0 0 0 chr9 110662830 110662873 -13413299 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1429 221 344 53 28 chr9 110662958 110663218 -13412954 - L2a LINE L2 -3 3423 3117 3 1429 248 0 31 0 chr9 110665150 110665182 -13410990 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1429 276 212 0 0 chr9 110665231 110665297 -13410875 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1429 222 295 0 0 chr9 110665444 110665522 -13410650 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1429 276 77 0 0 chr9 110665883 110665922 -13410250 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 1429 37 23 0 0 chr9 110667185 110667229 -13408943 + AT_rich Low_complexity Low_complexity 1 44 0 3 1429 1124 90 5 0 chr9 110667292 110667503 -13408669 + (TTTC)n Simple_repeat Simple_repeat 1 212 0 3 1429 648 221 0 0 chr9 110667513 110667626 -13408546 - B1_Mur3 SINE Alu -35 114 2 3 1429 252 211 0 19 chr9 110667723 110667776 -13408396 + MIRm SINE MIR 110 161 -115 3 1429 465 50 0 0 chr9 110668768 110668828 -13407344 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1429 382 272 0 64 chr9 110669721 110669831 -13406341 + B1F1 SINE Alu 3 105 -44 3 1429 506 297 45 174 chr9 110669826 110670050 -13406122 + ID_B1 SINE B4 5 199 -25 3 1429 579 311 0 0 chr9 110669940 110670059 -13406113 + B1F2 SINE Alu 12 130 -19 3 1429 825 65 0 0 chr9 110670084 110670192 -13405980 + (GGAGA)n Simple_repeat Simple_repeat 1 108 0 3 1429 306 0 0 0 chr9 110671011 110671045 -13405127 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1429 448 285 48 24 chr9 110671095 110671221 -13404951 + B1F SINE Alu 12 140 -9 3 1429 616 250 0 0 chr9 110671111 110671227 -13404945 + ID_B1 SINE B4 106 221 -3 3 1429 194 195 12 38 chr9 110672287 110672367 -13403805 + CT-rich Low_complexity Low_complexity 3 80 0 3 1429 198 71 0 0 chr9 110673153 110673181 -13402991 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1429 362 274 195 13 chr9 110673230 110673389 -13402783 - L2b LINE L2 -7 3368 3181 3 1429 601 49 49 0 chr9 110673416 110673518 -13402654 + (TG)n Simple_repeat Simple_repeat 1 107 0 3 1429 588 50 0 0 chr9 110673543 110673623 -13402549 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 1429 354 268 54 0 chr9 110673741 110673853 -13402319 + L1M2 LINE L1 5246 5363 -780 3 1429 270 79 26 0 chr9 110673857 110673895 -13402277 + PB1D9 SINE Alu 4 42 -78 3 1429 256 186 153 28 chr9 110673902 110673974 -13402198 + ID4 SINE ID 2 82 -1 3 1429 672 185 0 0 chr9 110674005 110674113 -13402059 + RSINE1 SINE B4 2 109 -56 3 1429 205 29 59 0 chr9 110674282 110674316 -13401856 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1429 189 0 0 0 chr9 110674331 110674352 -13401820 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1429 574 293 35 71 chr9 110674360 110674558 -13401614 - B3 SINE B2 -13 203 13 3 1429 837 117 0 0 chr9 110674566 110674694 -13401478 + (TCTA)n Simple_repeat Simple_repeat 4 131 0 3 1429 304 307 102 0 chr9 110674736 110674824 -13401348 + PB1D7 SINE Alu 17 113 -7 3 1429 310 272 48 104 chr9 110674884 110675200 -13400972 + L1M2 LINE L1 5481 5763 -420 3 1429 219 295 0 0 chr9 110675227 110675288 -13400884 - ID2 SINE ID -6 77 17 3 1429 905 129 249 12 chr9 110675328 110675501 -13400671 + B3 SINE B2 1 214 -2 3 1429 565 214 10 0 chr9 110675521 110675619 -13400553 - B1F1 SINE Alu -50 99 1 3 1429 248 311 20 82 chr9 110675534 110675632 -13400540 - MT2B2 LTR ERVL -343 241 150 3 1429 322 203 0 42 chr9 110676060 110676132 -13400040 - MTEb LTR MaLR 0 379 311 3 1429 1550 62 0 5 chr9 110676132 110676325 -13399847 + B2_Mm2 SINE B2 2 193 -2 3 1429 1078 89 0 0 chr9 110676325 110676459 -13399713 + B1_Mus1 SINE Alu 1 135 -13 3 1429 258 56 0 0 chr9 110676473 110676509 -13399663 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1429 734 311 15 24 chr9 110676524 110676756 -13399416 - MTEb LTR MaLR -53 326 100 3 1429 241 342 0 0 chr9 110676812 110677008 -13399164 + (TG)n Simple_repeat Simple_repeat 1 196 0 3 1429 477 0 0 0 chr9 110678649 110678702 -13397470 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1429 333 0 0 0 chr9 110678702 110678738 -13397434 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1429 579 200 0 34 chr9 110678738 110678857 -13397315 - B1_Mus2 SINE Alu -32 115 1 3 1429 195 221 143 31 chr9 110679059 110679157 -13397015 + L3 LINE CR1 4331 4439 -50 3 1429 426 176 9 27 chr9 110679318 110679429 -13396743 + CT-rich Low_complexity Low_complexity 1 109 0 3 1429 800 186 14 31 chr9 110679429 110679593 -13396579 - ID_B1 SINE B4 -46 246 80 3 1429 26 30 0 0 chr9 110682535 110682568 -13393604 + AT_rich Low_complexity Low_complexity 1 33 0 3 1429 1029 111 0 0 chr9 110682582 110682717 -13393455 - B1_Mus1 SINE Alu -13 135 1 3 1429 204 67 0 0 chr9 110682902 110682932 -13393240 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1429 187 237 0 0 chr9 110685285 110685323 -13390849 - L2a LINE L2 -56 3370 3333 3 1429 580 230 106 30 chr9 110685425 110685582 -13390590 + B3A SINE B2 35 197 -19 3 1429 316 252 16 73 chr9 110685668 110685792 -13390380 - PB1D10 SINE Alu 0 117 1 3 1429 389 169 127 0 chr9 110685798 110685869 -13390303 - PB1D7 SINE Alu -13 107 28 3 1429 512 236 205 55 chr9 110685960 110686069 -13390103 + MER58D DNA MER1_type 67 203 -183 3 1429 207 69 0 0 chr9 110686069 110686098 -13390074 + (CACAA)n Simple_repeat Simple_repeat 4 32 0 3 1429 512 236 205 55 chr9 110686098 110686261 -13389911 + MER58D DNA MER1_type 204 379 -7 3 1429 23 0 0 0 chr9 110686525 110686548 -13389624 + AT_rich Low_complexity Low_complexity 1 23 0 3 1429 861 179 39 64 chr9 110686640 110686843 -13389329 - B3A SINE B2 0 198 1 3 1429 221 345 8 8 chr9 110686851 110686968 -13389204 + C-rich Low_complexity Low_complexity 5 121 0 3 1429 443 106 27 0 chr9 110687082 110687192 -13388980 - B2_Mm2 SINE B2 0 195 47 3 1429 1304 54 60 0 chr9 110687205 110687373 -13388799 - B2_Mm1t SINE B2 -14 179 2 3 1429 726 167 287 0 chr9 110687373 110687652 -13388520 - ORR1D1 LTR MaLR -6 364 1 3 1429 359 225 37 12 chr9 110687653 110687734 -13388438 - B1F2 SINE Alu -60 89 7 3 1429 272 326 0 10 chr9 110687659 110687755 -13388417 - ID_B1 SINE B4 -63 161 67 3 1429 999 0 0 0 chr9 110687937 110688048 -13388124 + (TTTCC)n Simple_repeat Simple_repeat 1 111 0 3 1429 1250 35 11 22 chr9 110688048 110688225 -13387947 + (TTCCC)n Simple_repeat Simple_repeat 3 178 0 3 1429 996 143 0 13 chr9 110688262 110688411 -13387761 + B1_Mur3 SINE Alu 3 149 0 3 1429 30 45 0 0 chr9 110688533 110688577 -13387595 + AT_rich Low_complexity Low_complexity 1 44 0 3 1429 538 184 19 46 chr9 110688591 110688699 -13387473 + PB1D10 SINE Alu 12 116 -1 3 1429 494 269 21 76 chr9 110688760 110688905 -13387267 - B1F1 SINE Alu -3 146 10 3 1429 332 290 86 0 chr9 110689038 110689131 -13387041 - PB1D10 SINE Alu -5 112 12 3 1429 271 282 22 56 chr9 110689068 110689158 -13387014 - B4A SINE B4 -131 161 75 3 1429 225 0 0 0 chr9 110689171 110689196 -13386976 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3 1429 558 236 0 9 chr9 110689397 110689504 -13386668 - ID_B1 SINE B4 0 224 119 3 1429 258 224 0 17 chr9 110690233 110690268 -13385904 + T-rich Low_complexity Low_complexity 26 60 0 3 1429 687 200 46 0 chr9 110690268 110690398 -13385774 - B1_Mur3 SINE Alu -13 136 1 3 1429 258 224 0 17 chr9 110690398 110690421 -13385751 + T-rich Low_complexity Low_complexity 3 25 0 3 1429 715 236 35 0 chr9 110690425 110690569 -13385603 - RSINE1 SINE B4 -2 163 15 3 1429 705 178 106 23 chr9 110690610 110690742 -13385430 + B1_Mur2 SINE Alu 5 147 -2 3 1429 794 240 69 10 chr9 110690793 110690995 -13385177 - B3 SINE B2 0 216 3 3 1429 1045 203 44 19 chr9 110691216 110691422 -13384750 + B3 SINE B2 1 211 -5 4 1429 536 276 208 25 chr9 110691444 110691689 -13384483 + B4 SINE B4 1 290 -2 4 1429 2384 174 0 49 chr9 110691739 110692191 -13383981 - Lx LINE L1 0 6654 6225 4 1429 576 0 0 0 chr9 110692230 110692294 -13383878 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 4 1429 570 15 0 0 chr9 110692760 110692827 -13383345 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1429 629 250 0 0 chr9 110692827 110692951 -13383221 - ID_B1 SINE B4 -17 207 84 4 1429 944 181 15 92 chr9 110693153 110693426 -13382746 - L1MB8 LINE L1 0 6178 5927 4 1429 450 177 9 86 chr9 110693568 110693673 -13382499 - PB1D10 SINE Alu -2 115 19 4 1429 343 272 54 0 chr9 110693597 110693689 -13382483 - ID_B1 SINE B4 -48 176 80 4 1429 803 230 110 0 chr9 110693695 110693886 -13382286 - ID_B1 SINE B4 -8 216 5 4 1429 1311 86 32 11 chr9 110693912 110694101 -13382071 - B2_Mm2 SINE B2 0 195 3 4 1429 445 296 37 0 chr9 110694122 110694257 -13381915 - B1F SINE Alu -9 140 1 4 1429 316 197 77 26 chr9 110694292 110694370 -13381802 - PB1D10 SINE Alu -8 109 28 4 1429 303 282 73 6 chr9 110694380 110694489 -13381683 - L1M2c LINE L1 -4497 2352 2234 4 1429 1217 35 21 0 chr9 110694489 110694633 -13381539 - B1_Mm SINE Alu 0 147 1 4 1429 303 243 21 2 chr9 110694633 110694708 -13381464 - L1M2c LINE L1 -4616 2233 2163 4 1429 438 20 0 0 chr9 110694765 110694816 -13381356 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1429 372 244 275 0 chr9 110694821 110694952 -13381220 - B4 SINE B4 -13 279 113 4 1429 380 252 67 10 chr9 110694954 110695058 -13381114 - ID_B1 SINE B4 -29 195 86 4 1429 900 289 96 44 chr9 110695065 110695186 -13380986 - L1M2c LINE L1 -4792 2057 1925 4 1429 299 25 25 0 chr9 110695186 110695226 -13380946 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1429 1130 88 0 7 chr9 110695232 110695381 -13380791 - B1_Mus1 SINE Alu 0 148 1 4 1429 900 289 96 44 chr9 110695381 110695838 -13380334 - L1M2c LINE L1 -4930 1919 1442 4 1429 831 159 21 14 chr9 110696169 110696309 -13379863 + B1_Mur2 SINE Alu 9 149 0 4 1429 500 177 38 17 chr9 110696598 110696713 -13379459 - B1_Mur3 SINE Alu 0 120 2 4 1429 316 260 29 86 chr9 110696622 110696727 -13379445 - MT2B LTR ERVL -351 250 152 4 1429 549 0 0 0 chr9 110696779 110696840 -13379332 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 4 1429 450 0 0 0 chr9 110696992 110697042 -13379130 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1429 300 353 51 34 chr9 110697044 110697220 -13378952 - L1MCc LINE L1 -5320 1103 925 4 1429 387 291 0 0 chr9 110697221 110697400 -13378772 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1429 531 329 0 17 chr9 110697672 110697845 -13378327 - L1MCc LINE L1 -5965 458 289 4 1429 324 0 0 0 chr9 110697867 110697903 -13378269 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1429 288 77 0 0 chr9 110697956 110697995 -13378177 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1429 466 240 40 168 chr9 110698803 110698863 -13377309 + ID SINE ID 4 59 -165 4 1429 816 169 40 40 chr9 110698863 110699011 -13377161 - B1_Mur4 SINE Alu 0 150 3 4 1429 466 240 40 168 chr9 110699011 110699035 -13377137 + ID SINE ID 60 60 -164 4 1429 1374 76 43 0 chr9 110699035 110699219 -13376953 - B2_Mm1t SINE B2 0 193 2 4 1429 466 240 40 168 chr9 110699219 110699383 -13376789 + ID_B1 SINE B4 60 221 -3 4 1429 1791 167 50 6 chr9 110699495 110699833 -13376339 - ORR1B1 LTR MaLR -41 353 1 4 1429 875 197 113 10 chr9 110700090 110700285 -13375887 - B3 SINE B2 0 216 2 4 1429 423 38 0 0 chr9 110702013 110702066 -13374106 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1429 594 191 208 27 chr9 110702328 110702511 -13373661 - B3 SINE B2 0 216 1 4 1429 212 254 30 45 chr9 110702751 110702817 -13373355 + PB1D9 SINE Alu 55 119 -1 4 1429 301 265 0 0 chr9 110702956 110703024 -13373148 - ID2 SINE ID -14 69 2 4 1429 373 245 42 83 chr9 110703031 110703151 -13373021 - PB1D10 SINE Alu -2 115 1 4 1429 358 324 0 51 chr9 110703581 110703698 -13372474 - ID_B1 SINE B4 -32 192 82 4 1429 522 298 6 40 chr9 110704019 110704182 -13371990 + ID_B1 SINE B4 94 250 -42 4 1429 1459 67 0 6 chr9 110704524 110704703 -13371469 - B2_Mm2 SINE B2 -17 178 1 4 1429 728 269 11 11 chr9 110704891 110705068 -13371104 - B3 SINE B2 0 216 40 4 1429 365 291 18 26 chr9 110705259 110705372 -13370800 - PB1D10 SINE Alu -5 112 1 4 1429 378 0 0 0 chr9 110706079 110706121 -13370051 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1429 555 180 20 6 chr9 110706432 110706549 -13369623 - B1_Mur4 SINE Alu 0 120 1 4 1429 313 209 0 140 chr9 110706464 110706564 -13369608 - MT2B LTR ERVL -361 240 155 4 1429 1306 27 0 0 chr9 110706579 110706726 -13369446 - B1_Mus2 SINE Alu 0 147 1 4 1429 949 113 13 0 chr9 110706866 110707025 -13369147 + (TCC)n Simple_repeat Simple_repeat 2 162 0 4 1429 247 258 32 53 chr9 110707218 110707312 -13368860 - L1M4 LINE L1 -1098 5048 4957 4 1429 4590 101 90 19 chr9 110707445 110708133 -13368039 - RMER19A LTR ERVK 0 737 1 4 1429 1061 281 14 25 chr9 110708291 110708576 -13367596 + B4 SINE B4 2 283 -9 4 1429 833 236 77 6 chr9 110708637 110708820 -13367352 + B3A SINE B2 3 198 0 4 1429 2467 60 119 11 chr9 110708830 110709182 -13366990 - RLTR10 LTR ERVK 0 390 1 4 1429 413 320 21 46 chr9 110709191 110709430 -13366742 + L1M5 LINE L1 4687 4919 -1227 4 1429 612 251 35 163 chr9 110709431 110709542 -13366630 + ID_B1 SINE B4 1 202 -22 4 1429 885 102 0 59 chr9 110709542 110709678 -13366494 + B1_Mur4 SINE Alu 2 129 -21 4 1429 607 239 0 22 chr9 110709689 110709873 -13366299 + GA-rich Low_complexity Low_complexity 1 180 0 4 1429 300 226 0 31 chr9 110709919 110709983 -13366189 + L1M5 LINE L1 4984 5045 -1101 4 1429 1327 125 5 0 chr9 110709995 110710187 -13365985 + B2_Mm2 SINE B2 2 194 -1 4 1429 288 91 0 0 chr9 110710187 110710231 -13365941 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 4 1429 1480 33 61 0 chr9 110710280 110710460 -13365712 + B2_Mm1a SINE B2 2 192 -1 4 1429 456 238 88 81 chr9 110710481 110710611 -13365561 + RSINE1 SINE B4 5 141 -24 4 1429 360 0 0 0 chr9 110710611 110710651 -13365521 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1429 456 238 88 81 chr9 110710651 110710680 -13365492 + RSINE1 SINE B4 142 165 0 4 1429 1037 72 7 14 chr9 110710855 110710996 -13365176 - B1_Mus1 SINE Alu -1 147 8 4 1429 745 11 0 11 chr9 110710981 110711073 -13365099 - B2_Mm1t SINE B2 -101 92 2 4 1429 7329 162 58 45 chr9 110711073 110712213 -13363959 + RLTR22_Mur LTR ERVK 299 1471 -377 4 1429 1129 75 7 7 chr9 110712213 110712360 -13363812 + B1_Mus2 SINE Alu 1 147 0 4 1429 7329 162 58 45 chr9 110712360 110712749 -13363423 + RLTR22_Mur LTR ERVK 1472 1847 -1 4 1429 359 250 128 68 chr9 110713014 110713147 -13363025 + B1F SINE Alu 9 149 0 4 1429 1521 58 5 0 chr9 110713150 110713341 -13362831 + B2_Mm1a SINE B2 2 193 0 4 1429 763 213 15 0 chr9 110713359 110713495 -13362677 + B1_Mur2 SINE Alu 1 138 -11 4 1429 1061 213 64 5 chr9 110713537 110713740 -13362432 + B3 SINE B2 2 216 0 4 1429 267 173 0 0 chr9 110714164 110714216 -13361956 + (CAT)n Simple_repeat Simple_repeat 2 53 0 4 1429 22 70 0 0 chr9 110714540 110714583 -13361589 + AT_rich Low_complexity Low_complexity 1 43 0 4 1429 742 103 25 17 chr9 110714586 110714704 -13361468 + PB1D9 SINE Alu 2 120 0 4 1429 304 154 18 55 chr9 110714710 110714765 -13361407 + L1MEg LINE L1 1882 1934 -4150 4 1429 823 154 0 0 chr9 110714779 110714896 -13361276 + B1_Mur4 SINE Alu 7 123 -27 4 1429 348 248 66 19 chr9 110715251 110715378 -13360794 - MLT1D LTR MaLR 0 505 403 4 1429 1197 118 0 0 chr9 110715426 110715595 -13360577 - B2_Mm2 SINE B2 -26 169 1 4 1429 465 244 42 42 chr9 110715595 110715713 -13360459 - MLT1D LTR MaLR -368 137 20 4 1429 764 263 106 40 chr9 110715735 110716056 -13360116 - L1MD LINE L1 -513 5729 5388 4 1429 393 75 0 0 chr9 110716149 110716202 -13359970 + (T)n Simple_repeat Simple_repeat 1 53 0 4 1429 1258 34 0 0 chr9 110716203 110716350 -13359822 - B1_Mus1 SINE Alu 0 148 2 4 1429 261 0 0 0 chr9 110716869 110716898 -13359274 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 4 1429 429 182 188 18 chr9 110717364 110717476 -13358696 + B1F SINE Alu 11 141 -8 4 1429 215 366 108 0 chr9 110717550 110717643 -13358529 - MER5A DNA MER1_type -83 106 4 4 1429 863 204 173 0 chr9 110718369 110718560 -13357612 + URR1B DNA MER1_type 2 225 0 4 1429 251 317 57 32 chr9 110718453 110718577 -13357595 - CYRA11_Mm Unknown Y-chromosome -336 281 155 4 1429 247 265 0 0 chr9 110720844 110720893 -13355279 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 4 1429 419 346 56 109 chr9 110721977 110722357 -13353815 + MTEa LTR MaLR 7 366 -13 4 1429 251 354 115 46 chr9 110722347 110722670 -13353502 - MER82 DNA MER2_type -308 345 1 4 1429 387 60 0 0 chr9 110723208 110723258 -13352914 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 4 1429 225 0 0 0 chr9 110723254 110723279 -13352893 + (TTCTC)n Simple_repeat Simple_repeat 3 27 0 4 1429 308 266 119 42 chr9 110723279 110723291 -13352881 - B1_Mus2 SINE Alu 0 147 136 4 1429 1084 85 6 12 chr9 110723291 110723458 -13352714 + (TTTC)n Simple_repeat Simple_repeat 2 167 0 4 1429 396 199 155 20 chr9 110723458 110723563 -13352609 - B1_Mur1 SINE Alu -12 137 21 4 1429 558 0 0 0 chr9 110723690 110723752 -13352420 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 4 1429 180 0 0 0 chr9 110723755 110723775 -13352397 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 4 1429 237 250 61 30 chr9 110723818 110723884 -13352288 - ID2 SINE ID -15 68 1 4 1429 835 246 9 33 chr9 110724782 110724996 -13351176 - B3 SINE B2 -6 210 2 4 1429 445 259 191 16 chr9 110725084 110725272 -13350900 - RMER21B LTR ERV1 -275 567 347 4 1429 265 303 0 43 chr9 110725389 110725482 -13350690 - B1F SINE Alu -42 107 19 4 1429 780 254 49 0 chr9 110725485 110725670 -13350502 - B3 SINE B2 -22 194 1 4 1429 638 240 126 0 chr9 110725742 110725925 -13350247 - B3 SINE B2 -10 206 1 5 1429 414 0 0 0 chr9 110726022 110726068 -13350104 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1429 297 229 93 31 chr9 110726096 110726258 -13349914 - L1MC LINE L1 -2451 3695 3524 5 1429 324 0 0 0 chr9 110726265 110726301 -13349871 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1429 753 235 23 12 chr9 110726355 110726543 -13349629 - B3A SINE B2 -6 189 2 5 1429 570 305 164 24 chr9 110727117 110727500 -13348672 - MER82 DNA MER2_type -191 462 26 5 1429 254 29 29 0 chr9 110727531 110727566 -13348606 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 5 1429 346 286 59 22 chr9 110727677 110727813 -13348359 - B1F SINE Alu -6 143 3 5 1429 276 252 23 39 chr9 110727937 110728065 -13348107 + L1MC5 LINE L1 7113 7238 -723 5 1429 937 202 71 0 chr9 110728077 110728275 -13347897 + B3 SINE B2 1 212 -4 5 1429 272 318 60 8 chr9 110728692 110728825 -13347347 + L1ME3B LINE L1 6080 6219 -21 5 1429 317 234 16 39 chr9 110728848 110728977 -13347195 + L1MC5 LINE L1 7113 7238 -723 5 1429 240 269 48 175 chr9 110729062 110729110 -13347062 - B2_Mm2 SINE B2 -2 193 150 5 1429 387 0 0 0 chr9 110729110 110729153 -13347019 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1429 306 0 0 0 chr9 110729153 110729186 -13346986 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1429 442 220 10 125 chr9 110729186 110729325 -13346847 - B3A SINE B2 -46 149 29 5 1429 207 195 0 0 chr9 110729710 110729751 -13346421 + (ATGGTG)n Simple_repeat Simple_repeat 1 41 0 5 1429 1032 144 0 0 chr9 110730489 110730662 -13345510 + (GGA)n Simple_repeat Simple_repeat 3 175 0 5 1429 261 247 0 0 chr9 110730662 110730725 -13345447 + A-rich Low_complexity Low_complexity 10 72 0 5 1429 784 91 0 16 chr9 110732118 110732241 -13343931 - B1_Mus2 SINE Alu -26 121 1 5 1429 980 116 0 20 chr9 110733868 110734018 -13342154 + B1_Mus2 SINE Alu 1 147 0 5 1429 210 143 0 0 chr9 110734018 110734053 -13342119 + (GAAAA)n Simple_repeat Simple_repeat 3 37 0 5 1429 207 0 0 0 chr9 110734878 110734901 -13341271 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1429 244 195 349 12 chr9 110734901 110734984 -13341188 - PB1D9 SINE Alu -9 111 1 5 1429 380 305 68 8 chr9 110735055 110735187 -13340985 + ID_B1 SINE B4 83 222 -2 5 1429 452 238 0 45 chr9 110735383 110735493 -13340679 + PB1D10 SINE Alu 2 106 -11 5 1429 1948 112 66 99 chr9 110735494 110735889 -13340283 - ORR1B1 LTR MaLR -12 382 1 5 1429 243 0 0 0 chr9 110735908 110735935 -13340237 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1429 306 306 0 62 chr9 110735946 110736075 -13340097 - MER5A DNA MER1_type -66 123 3 5 1429 815 195 109 16 chr9 110736163 110736356 -13339816 + B3 SINE B2 1 211 -5 5 1429 200 43 20 61 chr9 110736524 110736573 -13339599 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 5 1429 225 0 0 0 chr9 110737886 110737911 -13338261 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1429 235 247 51 13 chr9 110737970 110737992 -13338180 - PB1D10 SINE Alu -9 108 28 5 1429 261 214 0 0 chr9 110737992 110738048 -13338124 - ID_B1 SINE B4 -60 164 109 5 1429 351 0 0 0 chr9 110738048 110738087 -13338085 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1429 1141 243 20 34 chr9 110739058 110739352 -13336820 - B4 SINE B4 -2 290 1 5 1429 665 198 177 21 chr9 110739398 110739584 -13336588 - B3 SINE B2 -1 215 1 5 1429 2255 116 44 49 chr9 110739700 110740107 -13336065 - RLTR44A LTR ERVK 0 405 1 5 1429 26 30 0 0 chr9 110740137 110740170 -13336002 + AT_rich Low_complexity Low_complexity 1 33 0 5 1429 792 175 7 7 chr9 110740170 110740314 -13335858 - B1_Mur2 SINE Alu -1 148 5 5 1429 204 40 0 0 chr9 110740353 110740378 -13335794 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 5 1429 288 0 0 0 chr9 110740482 110740514 -13335658 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1429 229 184 61 0 chr9 110741944 110741993 -13334179 + ORR1D-int LTR MaLR 32 83 -1287 5 1429 249 83 0 0 chr9 110742003 110742039 -13334133 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 5 1429 422 264 47 23 chr9 110742147 110742267 -13333905 + ID_B1 SINE B4 70 192 -32 5 1429 1080 41 0 14 chr9 110742267 110742402 -13333770 + B1_Mm SINE Alu 2 136 -11 5 1429 315 0 0 0 chr9 110742402 110742437 -13333735 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1429 1080 41 0 14 chr9 110742437 110742449 -13333723 + B1_Mm SINE Alu 137 146 -1 5 1429 199 135 37 37 chr9 110744094 110744148 -13332024 + CT-rich Low_complexity Low_complexity 4 57 0 5 1429 1300 83 5 54 chr9 110744491 110744695 -13331477 + B2_Mm2 SINE B2 2 195 0 5 1429 456 86 77 30 chr9 110744740 110744908 -13331264 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 5 1429 487 208 105 23 chr9 110745074 110745207 -13330965 + B3 SINE B2 61 204 -12 5 1429 1217 34 0 0 chr9 110745234 110745380 -13330792 - B1_Mus1 SINE Alu -2 146 1 5 1429 715 248 24 48 chr9 110745517 110745725 -13330447 + B3 SINE B2 1 203 -13 5 1429 441 179 0 0 chr9 110745726 110745810 -13330362 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 1429 21 57 0 0 chr9 110745832 110745867 -13330305 + AT_rich Low_complexity Low_complexity 1 35 0 5 1429 246 32 0 0 chr9 110748042 110748073 -13328099 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1429 711 213 58 32 chr9 110748255 110748444 -13327728 + B3A SINE B2 3 196 -2 5 1429 1804 151 52 30 chr9 110748827 110749190 -13326982 - ORR1D1 LTR MaLR -1 373 3 5 1429 731 295 5 20 chr9 110749686 110749890 -13326282 - B4A SINE B4 -6 286 86 5 1429 1078 54 0 20 chr9 110750321 110750458 -13325714 + B1_Mus1 SINE Alu 1 136 -12 5 1429 243 0 0 0 chr9 110750458 110750485 -13325687 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1429 1078 54 0 20 chr9 110750485 110750498 -13325674 + B1_Mus1 SINE Alu 137 148 0 5 1429 297 277 9 90 chr9 110750539 110750650 -13325522 + B1F1 SINE Alu 3 104 -45 5 1429 735 158 0 43 chr9 110750651 110750836 -13325336 + GA-rich Low_complexity Low_complexity 3 179 0 5 1429 279 0 0 0 chr9 110750836 110750867 -13325305 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 1429 330 250 25 0 chr9 110750867 110750926 -13325246 + L1MEg LINE L1 1883 1943 -4141 5 1429 808 211 84 15 chr9 110750926 110751128 -13325044 + B3 SINE B2 1 216 0 5 1429 330 250 25 0 chr9 110751128 110751148 -13325024 + L1MEg LINE L1 1944 1963 -4121 5 1429 974 165 4 4 chr9 110751310 110751550 -13324622 + GA-rich Low_complexity Low_complexity 1 240 0 5 1429 663 121 181 0 chr9 110751558 110751674 -13324498 + B1_Mur4 SINE Alu 1 137 -13 5 1429 180 0 0 0 chr9 110751674 110751694 -13324478 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1429 297 0 0 0 chr9 110751695 110751728 -13324444 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1429 234 0 0 0 chr9 110752944 110752970 -13323202 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1429 408 289 110 7 chr9 110752983 110753119 -13323053 - RSINE1 SINE B4 -14 151 2 5 1429 207 0 0 0 chr9 110753506 110753529 -13322643 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1429 758 187 0 14 chr9 110753529 110753662 -13322510 - B1_Mus1 SINE Alu -9 139 8 5 1429 375 232 28 83 chr9 110753566 110753674 -13322498 - MT2B LTR ERVL -344 257 156 5 1429 672 222 0 0 chr9 110754031 110754157 -13322015 - B1_Mur4 SINE Alu -11 139 14 5 1429 231 325 0 130 chr9 110754055 110754186 -13321986 - MT2B LTR ERVL -337 264 151 5 1429 1075 212 164 6 chr9 110754271 110754594 -13321578 - ORR1D1 LTR MaLR 0 374 1 5 1429 547 184 92 35 chr9 110754672 110754813 -13321359 - B1_Mur2 SINE Alu 0 149 1 5 178 7178 75 24 3 chr9 110754903 110755905 -13320267 - RLTR13D5 LTR ERVK 0 1023 1 5 1430 1016 189 71 0 chr9 110755991 110756187 -13319985 - B3 SINE B2 -6 210 1 5 1430 1128 55 0 7 chr9 110756410 110756558 -13319614 + B1_Mm SINE Alu 1 147 0 5 1430 2050 162 79 16 chr9 110756558 110756990 -13319182 - RLTR11A2 LTR ERVK -68 459 1 5 1430 711 247 11 33 chr9 110756992 110757176 -13318996 + B3 SINE B2 37 216 0 5 1430 437 264 65 71 chr9 110757445 110757600 -13318572 - RSINE1 SINE B4 0 165 12 5 1430 432 0 0 0 chr9 110757917 110757965 -13318207 + (TTATA)n Simple_repeat Simple_repeat 5 52 0 5 1430 219 339 15 0 chr9 110758038 110758103 -13318069 - ID4 SINE ID -2 81 16 5 1430 25 0 0 0 chr9 110759115 110759140 -13317032 + AT_rich Low_complexity Low_complexity 1 25 0 5 1430 587 248 0 15 chr9 110759164 110759295 -13316877 - B3A SINE B2 -67 131 3 5 1430 413 200 60 0 chr9 110760048 110760137 -13316035 + B1F SINE Alu 1 101 -26 5 1430 225 65 0 0 chr9 110760587 110760618 -13315554 + (CTG)n Simple_repeat Simple_repeat 3 33 0 5 1430 1027 246 171 81 chr9 110761400 110761775 -13314397 - MTD LTR MaLR -45 374 1 5 1430 365 298 91 108 chr9 110761947 110762233 -13313939 + B4 SINE B4 2 282 -10 5 1430 660 257 32 27 chr9 110762430 110762618 -13313554 - B3 SINE B2 0 216 28 5 1430 950 87 0 7 chr9 110762624 110762763 -13313409 + (TCTCC)n Simple_repeat Simple_repeat 2 139 0 5 1430 1100 124 6 0 chr9 110762768 110762946 -13313226 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 1430 810 114 8 8 chr9 110762946 110763064 -13313108 - B1_Mur4 SINE Alu -11 139 21 5 1430 697 106 150 34 chr9 110765287 110765434 -13310738 - B2_Mm2 SINE B2 0 195 32 5 1430 276 281 25 20 chr9 110766472 110766635 -13309537 + G-rich Low_complexity Low_complexity 1 163 0 5 1430 198 91 0 0 chr9 110768517 110768550 -13307622 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1430 322 303 82 87 chr9 110769551 110769658 -13306514 - B3A SINE B2 -4 194 1 5 1430 402 273 0 0 chr9 110769658 110769746 -13306426 - B4A SINE B4 -204 88 1 6 1430 315 267 132 9 chr9 110770264 110770370 -13305802 + MER45A DNA Tip100 60 178 0 6 1430 213 216 0 0 chr9 110771062 110771099 -13305073 + (TGGA)n Simple_repeat Simple_repeat 2 38 0 6 1430 406 234 0 0 chr9 110773963 110774040 -13302132 - ID SINE ID -145 79 3 6 1430 306 0 0 0 chr9 110774531 110774565 -13301607 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1430 1095 37 0 7 chr9 110774568 110774705 -13301467 - B1_Mus2 SINE Alu -11 136 1 6 1430 222 37 0 0 chr9 110775017 110775044 -13301128 + (ACTG)n Simple_repeat Simple_repeat 1 27 0 6 1430 247 298 12 23 chr9 110776790 110776876 -13299296 + MIR3 SINE MIR 109 193 -15 6 1430 208 0 62 0 chr9 110777448 110777480 -13298692 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 6 1430 189 121 0 0 chr9 110777890 110777923 -13298249 + (G)n Simple_repeat Simple_repeat 1 33 0 6 1430 853 196 111 5 chr9 110778217 110778407 -13297765 + B3 SINE B2 6 215 -1 6 1430 210 37 0 0 chr9 110778560 110778587 -13297585 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 6 1430 459 0 0 0 chr9 110778609 110778660 -13297512 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1430 270 0 0 0 chr9 110778660 110778689 -13297483 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1430 745 162 0 0 chr9 110778871 110778988 -13297184 + B1F2 SINE Alu 13 129 -20 6 1430 290 214 81 35 chr9 110779192 110779266 -13296906 + PB1D10 SINE Alu 26 106 -11 6 1430 368 38 0 36 chr9 110779266 110779321 -13296851 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 6 1430 290 214 81 35 chr9 110779321 110779333 -13296839 + PB1D10 SINE Alu 107 116 -1 6 1430 676 230 43 0 chr9 110779634 110779773 -13296399 - B1_Mur1 SINE Alu 0 149 5 6 1430 288 0 0 0 chr9 110779792 110779824 -13296348 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1430 250 325 22 102 chr9 110779837 110779974 -13296198 - RSINE1 SINE B4 -34 131 6 6 1430 651 278 137 4 chr9 110781220 110781445 -13294727 + B4 SINE B4 1 257 -35 6 1430 321 47 0 0 chr9 110781445 110781488 -13294684 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1430 651 278 137 4 chr9 110781488 110781518 -13294654 + B4 SINE B4 258 289 -3 6 1430 1365 110 16 0 chr9 110785370 110785561 -13290611 - B2_Mm2 SINE B2 0 195 2 6 1430 943 100 0 0 chr9 110785607 110785737 -13290435 - B2_Mm2 SINE B2 -65 130 1 6 1430 318 106 0 0 chr9 110785787 110785834 -13290338 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 6 1430 231 240 110 25 chr9 110785857 110785962 -13290210 - B1_Mur3 SINE Alu -5 115 1 6 1430 906 76 0 0 chr9 110789507 110789639 -13286533 + (TG)n Simple_repeat Simple_repeat 2 133 0 6 1430 207 0 0 0 chr9 110789654 110789677 -13286495 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1430 318 224 0 15 chr9 110790212 110790280 -13285892 - MTEa LTR MaLR 0 379 313 6 1430 537 108 29 19 chr9 110790280 110790384 -13285788 + GA-rich Low_complexity Low_complexity 3 107 0 6 1430 195 69 0 0 chr9 110792728 110792757 -13283415 + (CGGGGG)n Simple_repeat Simple_repeat 1 29 0 6 1430 1450 68 21 5 chr9 110794820 110795011 -13281161 + B2_Mm2 SINE B2 1 194 -1 6 1430 248 232 0 18 chr9 110795705 110795762 -13280410 - L4 LINE RTE -204 1825 1770 6 1430 187 305 80 51 chr9 110799455 110799593 -13276579 + MIRm SINE MIR 70 211 -65 6 1430 1333 97 21 5 chr9 110802612 110802798 -13273374 + B2_Mm2 SINE B2 1 189 -6 6 1430 908 279 56 7 chr9 110803068 110803346 -13272826 - B4A SINE B4 -2 290 1 6 1430 360 0 0 0 chr9 110804190 110804230 -13271942 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1430 606 191 47 78 chr9 110804230 110804279 -13271893 + MT2B LTR ERVL 72 136 -465 6 1430 4730 161 10 27 chr9 110804279 110804294 -13271878 + ORR1B1-int LTR MaLR 611 623 -886 6 1430 1584 58 0 0 chr9 110804294 110804485 -13271687 + B2_Mm1a SINE B2 2 192 -1 6 1430 606 191 47 78 chr9 110804485 110804613 -13271559 + MT2B LTR ERVL 137 257 -344 6 1430 4730 161 10 27 chr9 110804613 110805266 -13270906 + ORR1B1-int LTR MaLR 624 1405 -104 6 1430 1228 54 0 0 chr9 110805266 110805413 -13270759 - B1_Mus2 SINE Alu 0 147 1 6 1430 4730 161 10 27 chr9 110805413 110805530 -13270642 + ORR1B1-int LTR MaLR 1406 1509 0 6 1430 835 168 172 10 chr9 110805530 110805734 -13270438 + ORR1B1 LTR MaLR 1 237 -157 6 1430 249 57 0 0 chr9 110805734 110805769 -13270403 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 6 1430 882 77 0 58 chr9 110805772 110805910 -13270262 - B1_Mus1 SINE Alu 0 148 19 6 1430 1027 152 23 47 chr9 110805871 110806085 -13270087 + ORR1B1 LTR MaLR 186 394 0 6 1430 320 229 10 50 chr9 110806632 110806733 -13269439 - RNLTR23 LTR ERVK 0 642 546 6 1430 7577 313 32 34 chr9 110806739 110809751 -13266421 - RNERVK23-int LTR ERVK -5046 3171 165 6 1430 509 231 11 81 chr9 110809914 110810088 -13266084 - RNLTR23 LTR ERVK 0 642 481 6 1430 1277 207 8 13 chr9 110811237 110811521 -13264651 + ORR1B1 LTR MaLR 61 394 0 6 1430 255 301 24 0 chr9 110811544 110811627 -13264545 + LTR40a LTR ERVL 1 85 -434 6 1430 614 190 0 11 chr9 110812796 110812977 -13263195 + GA-rich Low_complexity Low_complexity 2 180 0 6 1430 228 204 26 17 chr9 110812955 110813070 -13263102 + (CAGAGA)n Simple_repeat Simple_repeat 3 118 0 6 1430 1069 179 69 10 chr9 110813244 110813447 -13262725 - B3 SINE B2 -1 215 1 6 1430 644 269 60 50 chr9 110813456 110813757 -13262415 - L1MA7 LINE L1 -458 5845 5542 6 1430 22 35 0 0 chr9 110813830 110813859 -13262313 + AT_rich Low_complexity Low_complexity 1 29 0 6 1430 443 294 16 16 chr9 110813859 110813987 -13262185 - ID_B1 SINE B4 -10 214 87 6 1430 397 34 0 33 chr9 110814108 110814169 -13262003 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1430 561 261 22 7 chr9 110814184 110814323 -13261849 - RSINE1 SINE B4 -22 143 3 6 1430 24 53 0 0 chr9 110814787 110814825 -13261347 + GC_rich Low_complexity Low_complexity 1 38 0 6 1430 614 299 54 48 chr9 110814896 110815247 -13260925 - ORR1E LTR MaLR -6 353 1 6 1430 1081 82 0 0 chr9 110815612 110815747 -13260425 + B1_Mus1 SINE Alu 2 136 -12 6 1430 414 0 0 0 chr9 110815747 110815793 -13260379 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 6 1430 812 229 0 37 chr9 110815806 110815996 -13260176 + B3A SINE B2 1 183 -15 6 1430 510 220 0 0 chr9 110815998 110816175 -13259997 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1430 187 252 9 9 chr9 110816200 110816312 -13259860 + (CA)n Simple_repeat Simple_repeat 1 112 0 6 1430 225 299 20 13 chr9 110816330 110816479 -13259693 + (CA)n Simple_repeat Simple_repeat 2 151 0 6 1430 218 32 0 31 chr9 110816964 110816996 -13259176 + (TAA)n Simple_repeat Simple_repeat 2 32 0 6 1430 661 327 5 37 chr9 110817752 110817818 -13258354 - B4A SINE B4 -2 290 228 6 1430 940 187 83 29 chr9 110817818 110818022 -13258150 - B3 SINE B2 -1 215 1 6 1430 661 327 5 37 chr9 110818022 110818171 -13258001 - B4A SINE B4 -65 227 82 6 1430 256 176 29 0 chr9 110818306 110818374 -13257798 + CT-rich Low_complexity Low_complexity 3 72 0 6 1430 264 30 0 0 chr9 110818447 110818480 -13257692 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1430 1015 23 8 0 chr9 110818481 110818611 -13257561 - B1_Mus1 SINE Alu 0 148 18 6 1430 614 207 7 46 chr9 110818611 110818633 -13257539 - ID_B1 SINE B4 -1 223 78 6 1430 253 301 99 99 chr9 110818623 110818689 -13257483 - B3 SINE B2 -1 215 153 6 1430 252 0 0 0 chr9 110818689 110818717 -13257455 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1430 253 301 99 99 chr9 110818717 110818801 -13257371 - B3 SINE B2 -64 152 65 6 1430 540 233 32 51 chr9 110818758 110818916 -13257256 + B3 SINE B2 51 205 -11 6 1430 1457 79 11 0 chr9 110819679 110819869 -13256303 + B2_Mm1t SINE B2 2 193 0 6 1430 499 274 0 0 chr9 110819869 110819975 -13256197 - B1_Mur1 SINE Alu -14 135 30 6 1430 328 283 0 11 chr9 110820007 110820111 -13256061 + B1_Mur1 SINE Alu 40 139 -10 6 1430 291 114 0 0 chr9 110820350 110820394 -13255778 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 6 1430 613 249 104 17 chr9 110820750 110820943 -13255229 + B3A SINE B2 2 188 -7 6 1430 888 100 0 8 chr9 110820955 110821086 -13255086 + B1_Mm SINE Alu 9 138 -9 6 1430 243 0 0 0 chr9 110821086 110821113 -13255059 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1430 22 0 0 0 chr9 110821383 110821405 -13254767 + AT_rich Low_complexity Low_complexity 1 22 0 6 1430 400 184 55 66 chr9 110821405 110821586 -13254586 - RMER17C LTR ERVK -135 275 97 6 1430 525 299 29 0 chr9 110821597 110821734 -13254438 - ID_B1 SINE B4 -3 221 81 6 1430 360 0 0 0 chr9 110821737 110821777 -13254395 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 6 1430 243 191 0 0 chr9 110821785 110821827 -13254345 - PB1 SINE Alu -20 107 66 6 1430 416 277 78 28 chr9 110822194 110822335 -13253837 + RSINE1 SINE B4 7 154 -11 6 1430 1080 201 24 5 chr9 110822473 110822678 -13253494 + B3 SINE B2 2 210 -6 6 1430 741 200 107 11 chr9 110824054 110824231 -13251941 - B3 SINE B2 0 216 23 6 1430 749 157 25 11 chr9 110824261 110824901 -13251271 + (TG)n Simple_repeat Simple_repeat 1 649 0 6 1430 336 280 204 18 chr9 110824950 110825117 -13251055 - B4A SINE B4 -62 230 33 6 1430 308 330 95 22 chr9 110825181 110825413 -13250759 + L1M4c LINE L1 24 272 -6275 6 1430 341 284 25 75 chr9 110825595 110825755 -13250417 + L1M4c LINE L1 1435 1586 -4960 6 1430 742 295 75 5 chr9 110826010 110826211 -13249961 + ID_B1 SINE B4 1 215 -9 6 1430 290 209 75 0 chr9 110826247 110826314 -13249858 + RSINE1 SINE B4 43 114 -51 6 1430 472 332 105 23 chr9 110826376 110826850 -13249322 + L1M4c LINE L1 4656 5179 -1365 6 1430 1273 109 44 0 chr9 110826963 110827146 -13249026 + B2_Mm2 SINE B2 1 191 -4 6 1430 811 80 144 0 chr9 110827161 110827286 -13248886 + B1_Mus1 SINE Alu 6 148 0 6 1430 278 0 0 51 chr9 110827286 110827325 -13248847 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 6 1430 1406 85 21 0 chr9 110827336 110827524 -13248648 + B2_Mm2 SINE B2 3 194 -1 6 1430 379 317 98 78 chr9 110827531 110827866 -13248306 + L1M4c LINE L1 5334 5675 -869 6 1430 747 119 48 0 chr9 110827867 110827993 -13248179 - B1_Mur2 SINE Alu 0 149 18 6 1430 1266 20 0 13 chr9 110828636 110828785 -13247387 + B1_Mm SINE Alu 1 147 0 6 1430 183 42 0 0 chr9 110828797 110828821 -13247351 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1430 359 263 0 21 chr9 110828826 110828923 -13247249 + PB1D7 SINE Alu 25 119 -1 7 1430 528 231 8 55 chr9 110829387 110829460 -13246712 - B1_Mur1 SINE Alu -27 122 55 7 1430 842 152 299 0 chr9 110829460 110829624 -13246548 - B3 SINE B2 -3 213 1 7 1430 528 231 8 55 chr9 110829624 110829678 -13246494 - B1_Mur1 SINE Alu -95 54 1 7 1430 24 0 0 0 chr9 110829678 110829702 -13246470 + AT_rich Low_complexity Low_complexity 1 24 0 7 1430 528 253 82 71 chr9 110830607 110830803 -13245369 - B3A SINE B2 0 198 1 7 1430 260 111 0 22 chr9 110831100 110831146 -13245026 + (CCCCCT)n Simple_repeat Simple_repeat 5 49 0 7 1430 27 0 0 48 chr9 110831166 110831183 -13244989 + AT_rich Low_complexity Low_complexity 1 16 0 7 1430 1176 50 7 0 chr9 110831183 110831323 -13244849 + B1_Mm SINE Alu 1 141 -6 7 1430 27 0 0 48 chr9 110831323 110831347 -13244825 + AT_rich Low_complexity Low_complexity 1 24 0 7 1430 654 291 89 55 chr9 110831348 110831694 -13244478 + RLTR17 LTR ERVK 33 426 -266 7 1430 331 156 31 15 chr9 110831937 110832002 -13244170 + RLTR31_Mur LTR ERVK 488 553 0 7 1430 728 202 20 30 chr9 110832002 110832137 -13244035 - B3 SINE B2 -46 149 3 7 1430 264 59 0 0 chr9 110832231 110832265 -13243907 + (GTTTG)n Simple_repeat Simple_repeat 1 34 0 7 1430 1511 180 109 15 chr9 110832292 110832481 -13243691 - ORR1C2 LTR MaLR 0 384 170 7 1430 219 88 0 0 chr9 110832481 110832515 -13243657 + (ACTG)n Simple_repeat Simple_repeat 4 37 0 7 1430 1511 180 109 15 chr9 110832515 110832663 -13243509 - ORR1C2 LTR MaLR -215 169 16 7 1430 481 299 51 0 chr9 110832676 110832813 -13243359 - B1F SINE Alu -5 144 1 7 1430 359 272 35 17 chr9 110832821 110832937 -13243235 - PB1 SINE Alu 0 127 10 7 1430 1212 41 0 26 chr9 110833048 110833199 -13242973 + B1_Mus1 SINE Alu 2 148 0 7 1430 969 203 64 10 chr9 110833221 110833425 -13242747 + B3 SINE B2 1 215 -1 7 1430 1249 48 0 0 chr9 110833425 110833571 -13242601 + B1_Mus2 SINE Alu 1 147 0 7 1430 212 77 26 0 chr9 110833571 110833610 -13242562 + (TAAAA)n Simple_repeat Simple_repeat 5 44 0 7 1430 22 0 0 0 chr9 110833999 110834021 -13242151 + AT_rich Low_complexity Low_complexity 1 22 0 7 1430 423 137 0 0 chr9 110834031 110834104 -13242068 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1430 201 231 0 0 chr9 110834517 110834569 -13241603 + C-rich Low_complexity Low_complexity 1 52 0 7 1430 496 227 8 25 chr9 110834795 110834917 -13241255 + PB1D7 SINE Alu 1 120 0 7 1430 743 277 38 0 chr9 110834927 110835140 -13241032 + ID_B1 SINE B4 2 222 -2 7 1430 342 331 35 23 chr9 110835285 110835458 -13240714 + MLT1L LTR MaLR 404 578 -32 7 1430 1335 55 0 6 chr9 110835566 110835732 -13240440 + B2_Mm2 SINE B2 1 165 -30 7 1430 803 292 0 0 chr9 110835873 110836034 -13240138 + RSINE1 SINE B4 5 165 0 7 1430 600 196 37 0 chr9 110836100 110836207 -13239965 + B3 SINE B2 105 215 -1 7 1430 702 191 8 15 chr9 110837164 110837297 -13238875 - ID_B1 SINE B4 -2 222 91 7 1430 434 292 23 23 chr9 110837607 110837740 -13238432 + ORR1E LTR MaLR 6 138 -221 7 1430 478 271 42 21 chr9 110837782 110837925 -13238247 + RSINE1 SINE B4 1 146 -19 7 1430 1252 28 14 0 chr9 110838913 110839058 -13237114 + B1_Mus2 SINE Alu 1 147 0 7 1430 402 21 0 0 chr9 110839081 110839128 -13237044 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1430 1009 73 80 0 chr9 110839173 110839310 -13236862 + B1_Mus1 SINE Alu 1 148 0 7 1430 402 21 0 0 chr9 110839333 110839380 -13236792 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1430 997 80 80 0 chr9 110839422 110839559 -13236613 + B1_Mus1 SINE Alu 1 148 0 7 1430 1387 77 44 0 chr9 110839840 110840023 -13236149 + B2_Mm2 SINE B2 1 191 -4 7 1430 1629 57 0 0 chr9 110840027 110840220 -13235952 + B2_Mm1t SINE B2 1 193 0 7 1430 1300 47 101 0 chr9 110841114 110841283 -13234889 + B2_Mm2 SINE B2 1 186 -9 7 1430 583 289 19 19 chr9 110841287 110841446 -13234726 - B3 SINE B2 -57 159 1 7 1430 287 221 380 0 chr9 110841470 110841583 -13234589 - B3A SINE B2 -42 156 1 7 1430 276 348 65 0 chr9 110841600 110841692 -13234480 - PB1D7 SINE Alu -22 98 1 7 1430 296 281 0 0 chr9 110841635 110841699 -13234473 - B4A SINE B4 -150 142 79 7 1430 353 279 168 64 chr9 110841705 110841908 -13234264 + ID_B1 SINE B4 1 224 0 7 1430 825 117 77 2 chr9 110841913 110842075 -13234097 + B2_Mm2 SINE B2 1 181 -12 7 1430 337 333 35 0 chr9 110842299 110842443 -13233729 - B1F1 SINE Alu 0 149 1 7 1430 565 222 8 0 chr9 110842586 110842703 -13233469 - PB1D9 SINE Alu 0 120 3 7 1430 363 238 148 0 chr9 110842749 110842850 -13233322 - PB1D9 SINE Alu 0 120 5 7 1430 394 241 34 85 chr9 110843798 110843916 -13232256 + PB1D9 SINE Alu 1 112 -8 7 1430 463 259 36 29 chr9 110843935 110844074 -13232098 + B1F SINE Alu 3 142 -7 7 1430 189 0 0 0 chr9 110844705 110844726 -13231446 + (GCTG)n Simple_repeat Simple_repeat 3 23 0 7 1430 513 47 0 0 chr9 110845394 110845458 -13230714 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1430 303 28 0 0 chr9 110845458 110845493 -13230679 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1430 214 182 91 0 chr9 110845931 110845975 -13230197 + ID2 SINE ID 4 51 -32 7 1430 24 0 0 0 chr9 110846102 110846126 -13230046 + AT_rich Low_complexity Low_complexity 1 24 0 7 1430 320 256 26 0 chr9 110846158 110846236 -13229936 + ID_B1 SINE B4 128 207 -17 7 1430 1450 54 11 5 chr9 110846253 110846438 -13229734 + B2_Mm1a SINE B2 3 188 -5 7 1430 533 117 0 0 chr9 110846550 110846627 -13229545 + B1_Mus2 SINE Alu 62 138 -9 7 1430 699 181 100 24 chr9 110846900 110847070 -13229102 + B2_Mm2 SINE B2 4 186 -9 7 1430 252 0 0 0 chr9 110847182 110847210 -13228962 + (TC)n Simple_repeat Simple_repeat 2 29 0 7 1430 380 236 199 20 chr9 110847376 110847527 -13228645 + RMER5 LTR ERV1 356 533 -1 7 1430 190 122 71 24 chr9 110847926 110847968 -13228204 + L3 LINE CR1 1129 1172 -3317 7 1430 251 291 72 72 chr9 110847991 110848102 -13228070 + RSINE1 SINE B4 46 156 -9 7 1430 288 0 0 0 chr9 110848103 110848135 -13228037 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1430 429 178 100 27 chr9 110848909 110849019 -13227153 - PB1D9 SINE Alu 0 120 3 7 1430 446 250 15 15 chr9 110849501 110849631 -13226541 + B1F1 SINE Alu 1 130 -19 7 1430 307 291 115 10 chr9 110849652 110849756 -13226416 - PB1D7 SINE Alu -5 115 1 7 1430 1246 86 42 31 chr9 110850900 110851093 -13225079 - B2_Mm2 SINE B2 0 195 1 7 1430 523 262 0 63 chr9 110851430 110851605 -13224567 - RSINE1 SINE B4 0 165 2 7 1430 432 0 0 0 chr9 110852237 110852285 -13223887 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 7 1430 565 92 44 0 chr9 110852287 110852379 -13223793 - B1_Mus2 SINE Alu -12 138 22 7 1430 248 283 0 0 chr9 110852385 110852445 -13223727 + MLT1E1 LTR MaLR 591 650 -4 7 1430 229 227 197 0 chr9 110852497 110852563 -13223609 - ID4_ SINE ID -2 81 3 7 1430 1127 177 39 0 chr9 110852602 110852805 -13223367 - B3 SINE B2 -2 214 4 7 1430 566 265 73 45 chr9 110852812 110852992 -13223180 - B4A SINE B4 -61 231 46 7 1430 503 206 108 32 chr9 110852993 110853179 -13222993 - MER33 DNA MER1_type -34 290 91 7 1430 878 157 22 0 chr9 110853181 110853315 -13222857 - B3 SINE B2 -76 140 4 7 1430 419 267 112 40 chr9 110853440 110853592 -13222580 - RSINE1 SINE B4 0 165 3 7 1430 615 270 198 10 chr9 110853604 110853806 -13222366 - MTEa LTR MaLR -136 243 4 7 1430 1198 171 71 0 chr9 110854275 110854485 -13221687 - URR1B DNA MER1_type 0 225 1 7 1430 450 127 0 0 chr9 110854645 110854716 -13221456 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1430 360 271 11 23 chr9 110854727 110854814 -13221358 - ID_B1 SINE B4 -53 171 86 7 1430 264 320 10 20 chr9 110855187 110855289 -13220883 + MER53 DNA hAT 7 107 -86 7 1430 247 271 0 0 chr9 110855291 110855339 -13220833 - ID4_ SINE ID -2 81 34 7 1430 623 226 44 23 chr9 110855387 110855553 -13220619 - ID_B1 SINE B4 0 224 61 7 1430 335 317 73 0 chr9 110855550 110855673 -13220499 - ID_B1 SINE B4 -11 213 82 7 1430 264 30 0 0 chr9 110855908 110855941 -13220231 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1430 233 111 0 0 chr9 110857062 110857098 -13219074 - ID_B1 SINE B4 -5 219 184 7 1430 349 206 15 0 chr9 110857095 110857163 -13219009 - ID SINE ID -154 70 2 7 1430 1096 111 33 44 chr9 110859130 110859310 -13216862 + B2_Mm2 SINE B2 2 179 -16 7 1430 198 118 0 0 chr9 110859469 110859503 -13216669 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 7 1430 207 114 0 0 chr9 110859515 110859550 -13216622 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1430 813 58 0 0 chr9 110859689 110859792 -13216380 - B1_Mm SINE Alu -44 103 1 7 1430 283 225 18 18 chr9 110859692 110859805 -13216367 - ORR1B1-int LTR MaLR -762 747 635 7 1430 628 266 33 17 chr9 110859911 110860093 -13216079 + B3A SINE B2 29 200 -16 7 1430 531 98 7 57 chr9 110860094 110860234 -13215938 + (CA)n Simple_repeat Simple_repeat 1 133 0 7 1430 631 239 121 11 chr9 110860936 110861118 -13215054 + B3 SINE B2 3 204 -12 7 1430 742 183 56 0 chr9 110861188 110861330 -13214842 + B1_Mur4 SINE Alu 1 150 0 7 1430 192 77 0 0 chr9 110861365 110861391 -13214781 + (CATATA)n Simple_repeat Simple_repeat 1 26 0 8 1430 1265 81 0 6 chr9 110861420 110861593 -13214579 + B2_Mm2 SINE B2 23 194 -1 8 1430 911 138 0 0 chr9 110861884 110862022 -13214150 - B1_Mur3 SINE Alu -3 146 9 8 1430 183 100 0 0 chr9 110862027 110862057 -13214115 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 8 1430 596 261 64 19 chr9 110862138 110862294 -13213878 - RSINE1 SINE B4 -1 164 2 8 1430 435 282 17 0 chr9 110862296 110862413 -13213759 - ID_B1 SINE B4 -4 220 102 8 1430 320 296 0 54 chr9 110862543 110862636 -13213536 + RSINE1 SINE B4 36 123 -42 8 1430 484 292 60 16 chr9 110862816 110862976 -13213196 + ID_B1 SINE B4 83 247 -45 8 1430 221 231 173 0 chr9 110863882 110863934 -13212238 - RSINE1 SINE B4 -99 66 6 8 1430 228 200 0 0 chr9 110863943 110863993 -13212179 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1430 582 239 51 6 chr9 110863993 110864149 -13212023 - RSINE1 SINE B4 0 165 3 8 1430 803 117 62 0 chr9 110864199 110864327 -13211845 - B1_Mur3 SINE Alu -13 136 1 8 1430 297 192 0 0 chr9 110864372 110864424 -13211748 - B1_Mus2 SINE Alu -95 52 1 8 1430 239 234 0 21 chr9 110864424 110864472 -13211700 - B4A SINE B4 -64 228 182 8 1430 866 232 0 29 chr9 110864496 110864669 -13211503 - B3 SINE B2 0 216 49 8 1430 443 275 79 14 chr9 110864700 110864827 -13211345 - PB1 SINE Alu -25 123 1 8 1430 994 65 63 28 chr9 110865463 110865605 -13210567 - B1_Mm SINE Alu 0 147 1 8 1430 232 195 49 0 chr9 110865619 110865660 -13210512 + PB1D9 SINE Alu 2 44 -76 8 1430 886 130 13 46 chr9 110865799 110865952 -13210220 - B1_Mur3 SINE Alu 0 149 2 8 1430 384 250 23 0 chr9 110866038 110866126 -13210046 + Charlie12 DNA MER1_type 14 103 -2770 8 1430 545 298 8 0 chr9 110866356 110866480 -13209692 + RSINE1 SINE B4 8 132 -33 8 1430 291 279 12 48 chr9 110866454 110866537 -13209635 - B1F1 SINE Alu -65 84 5 8 1430 1177 69 0 0 chr9 110866572 110866717 -13209455 + B1_Mm SINE Alu 1 145 -2 8 1430 631 225 174 33 chr9 110867029 110867213 -13208959 + B3 SINE B2 1 210 -6 8 1430 996 182 103 122 chr9 110867662 110867913 -13208259 + ORR1E LTR MaLR 52 300 -59 8 1430 816 250 34 5 chr9 110867913 110868118 -13208054 - B3 SINE B2 -5 211 1 8 1430 996 182 103 122 chr9 110868118 110868178 -13207994 + ORR1E LTR MaLR 301 357 -2 8 1430 391 245 68 10 chr9 110868574 110868677 -13207495 - B1_Mur3 SINE Alu -40 109 1 8 1430 240 143 0 0 chr9 110868684 110868726 -13207446 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 8 1430 1101 88 0 39 chr9 110868726 110868880 -13207292 - B1_Mus1 SINE Alu 0 148 1 8 1430 324 339 157 127 chr9 110869155 110869316 -13206856 + L1M4 LINE L1 4590 4784 -1362 8 1430 260 53 26 0 chr9 110869316 110869354 -13206818 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 8 1430 324 367 82 74 chr9 110869354 110869423 -13206749 + L1M4 LINE L1 4762 4824 -1322 8 1430 385 167 567 0 chr9 110869423 110869513 -13206659 - B1_Mur1 SINE Alu -8 141 1 8 1430 324 367 82 74 chr9 110869513 110869612 -13206560 + L1M4 LINE L1 4825 4929 -1217 8 1430 257 316 10 0 chr9 110869654 110869752 -13206420 - L1M4b LINE L1 -5569 1765 1667 8 1430 225 182 0 0 chr9 110869753 110869808 -13206364 + CT-rich Low_complexity Low_complexity 2 56 0 8 1430 399 89 0 0 chr9 110869915 110869971 -13206201 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 1430 469 151 168 50 chr9 110869982 110870101 -13206071 - MTC LTR MaLR -284 137 5 8 1430 1425 69 26 5 chr9 110870165 110870354 -13205818 - B2_Mm2 SINE B2 0 195 3 8 1430 324 254 185 0 chr9 110870406 110870552 -13205620 + B3 SINE B2 8 194 -4 8 1430 360 130 0 0 chr9 110870596 110870650 -13205522 - ORR1B2 LTR MaLR -2 365 312 8 1430 1287 40 0 0 chr9 110870656 110870804 -13205368 - B1_Mus1 SINE Alu 0 148 1 8 1430 600 257 81 0 chr9 110870831 110870979 -13205193 - RSINE1 SINE B4 -2 163 4 8 1430 1227 74 107 6 chr9 110871056 110871214 -13204958 + B2_Mm2 SINE B2 1 177 -18 8 1430 243 0 0 0 chr9 110871214 110871241 -13204931 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1430 1227 74 107 6 chr9 110871241 110871259 -13204913 + B2_Mm2 SINE B2 178 195 0 8 1430 536 190 164 0 chr9 110871589 110871705 -13204467 + B1_Mur2 SINE Alu 1 135 -14 8 1430 306 50 0 0 chr9 110871705 110871745 -13204427 + (CAAT)n Simple_repeat Simple_repeat 4 43 0 8 1430 191 336 164 0 chr9 110871905 110872009 -13204163 + MIRm SINE MIR 131 251 -25 8 1430 1287 240 77 40 chr9 110872131 110872482 -13203690 - MTE2b LTR MaLR -15 364 1 8 1430 507 17 0 0 chr9 110872892 110872952 -13203220 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 8 1430 3023 8 2 127 chr9 110872952 110873371 -13202801 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1430 29604 17 1 2 chr9 110873371 110876646 -13199526 - IAPEz-int LTR ERVK 0 6481 3210 8 1430 8454 66 74 74 chr9 110876645 110877951 -13198221 - IAPEz-int LTR ERVK -5168 1313 8 8 1430 3023 8 2 127 chr9 110877951 110878370 -13197802 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1430 228 111 0 0 chr9 110878370 110878406 -13197766 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 8 1430 684 230 0 0 chr9 110878415 110878541 -13197631 - B1_Mur1 SINE Alu -14 135 10 8 1430 360 357 44 9 chr9 110878441 110878554 -13197618 - B4 SINE B4 -94 198 82 8 1430 595 299 12 65 chr9 110878572 110878740 -13197432 - RSINE1 SINE B4 0 165 7 8 1430 529 235 20 0 chr9 110878757 110878859 -13197313 - PB1D10 SINE Alu -5 112 9 8 1430 457 269 28 19 chr9 110878890 110878996 -13197176 - PB1D7 SINE Alu 0 120 14 8 1430 396 0 0 0 chr9 110879014 110879058 -13197114 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1430 1074 96 54 6 chr9 110879167 110879334 -13196838 - B2_Mm2 SINE B2 -20 175 1 8 1430 728 281 22 26 chr9 110879603 110879830 -13196342 + B4 SINE B4 4 229 -63 8 1430 678 258 40 55 chr9 110879830 110880031 -13196141 + B3A SINE B2 1 198 0 8 1430 600 266 46 64 chr9 110880045 110880085 -13196087 + B3A SINE B2 1 32 -166 8 1430 825 207 0 7 chr9 110880085 110880224 -13195948 + B1_Mur2 SINE Alu 1 139 -10 8 1430 255 79 0 0 chr9 110880224 110880262 -13195910 + (CAA)n Simple_repeat Simple_repeat 2 39 0 8 1430 600 266 46 64 chr9 110880268 110880400 -13195772 + B3A SINE B2 33 170 -28 8 1430 195 159 0 0 chr9 110880502 110880522 -13195650 + T-rich Low_complexity Low_complexity 25 44 0 8 1430 1208 61 0 7 chr9 110880522 110880671 -13195501 - B1_Mus1 SINE Alu 0 148 1 8 1430 195 159 0 0 chr9 110880671 110880694 -13195478 + T-rich Low_complexity Low_complexity 2 24 0 8 1430 231 88 0 0 chr9 110880743 110880777 -13195395 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 8 1430 217 184 0 20 chr9 110881194 110881244 -13194928 + T-rich Low_complexity Low_complexity 5 53 0 8 1430 1243 35 7 0 chr9 110881472 110881616 -13194556 - B1_Mm SINE Alu -1 146 2 8 1430 1570 53 0 0 chr9 110881619 110881808 -13194364 - B2_Mm1t SINE B2 -4 189 1 8 1430 522 0 0 0 chr9 110881876 110881934 -13194238 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1430 262 203 54 0 chr9 110882686 110882760 -13193412 + (ACTG)n Simple_repeat Simple_repeat 2 79 0 8 1430 925 223 83 0 chr9 110882772 110882965 -13193207 - ID_B1 SINE B4 -5 219 11 8 1430 620 180 9 26 chr9 110883147 110883261 -13192911 - B3 SINE B2 -101 115 4 8 1430 1513 63 5 0 chr9 110883497 110883688 -13192484 + B2_Mm1t SINE B2 2 193 0 8 1430 1138 36 58 0 chr9 110883697 110883836 -13192336 + B1_Mus1 SINE Alu 2 148 0 8 1430 206 177 0 81 chr9 110883838 110883924 -13192248 + A-rich Low_complexity Low_complexity 1 79 0 8 1430 563 168 187 32 chr9 110883948 110884071 -13192101 + B1_Mur4 SINE Alu 8 149 -1 8 1430 215 325 39 0 chr9 110884556 110884633 -13191539 + RSINE1 SINE B4 7 86 -79 8 1430 1268 80 23 0 chr9 110884564 110884740 -13191432 + B2_Mm1a SINE B2 14 193 0 8 1430 207 139 0 0 chr9 110885616 110885652 -13190520 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 8 1430 225 0 0 0 chr9 110885741 110885766 -13190406 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1430 218 216 39 19 chr9 110885791 110885843 -13190329 + RSINE1 SINE B4 4 56 -109 8 1430 1189 56 0 7 chr9 110886211 110886356 -13189816 + B1_Mus2 SINE Alu 3 146 -1 8 1430 186 71 0 0 chr9 110886357 110886385 -13189787 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1430 372 280 67 137 chr9 110886591 110886905 -13189267 - B4A SINE B4 0 292 1 8 1431 251 203 14 0 chr9 110886929 110886998 -13189174 + CT-rich Low_complexity Low_complexity 2 71 0 8 1431 409 370 0 0 chr9 110887235 110887362 -13188810 + B1_Mur1 SINE Alu 2 128 -21 8 1431 849 181 20 67 chr9 110887441 110887597 -13188575 - B2_Mm2 SINE B2 -7 188 38 8 1431 3107 70 124 16 chr9 110887597 110888032 -13188140 - RLTR45 LTR ERVK 0 482 1 8 1431 849 181 20 67 chr9 110888032 110888070 -13188102 - B2_Mm2 SINE B2 -158 37 4 8 1431 423 104 9 45 chr9 110890335 110890446 -13185726 + G-rich Low_complexity Low_complexity 1 107 0 8 1431 207 69 0 0 chr9 110890619 110890648 -13185524 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 8 1431 306 242 45 0 chr9 110891017 110891083 -13185089 - ID4 SINE ID -10 73 5 8 1431 248 53 0 26 chr9 110891090 110891129 -13185043 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 8 1431 1107 74 54 0 chr9 110891131 110891280 -13184892 - B2_Mm2 SINE B2 -38 157 1 8 1431 577 348 94 31 chr9 110893264 110893614 -13182558 - MER82 DNA MER2_type -191 462 91 8 1431 1458 43 48 5 chr9 110893869 110894056 -13182116 - B2_Mm2 SINE B2 0 195 1 8 1431 534 310 41 0 chr9 110894318 110894489 -13181683 - MER74C LTR ERVL -3 457 280 8 1431 401 314 112 41 chr9 110894512 110894708 -13181464 - RMER15 LTR ERVL -13 562 353 8 1431 412 350 65 65 chr9 110894961 110895190 -13180982 - MER74C LTR ERVL -221 239 11 8 1431 376 202 91 55 chr9 110895404 110895514 -13180658 + MLT1C LTR MaLR 336 449 -18 8 1431 1440 39 66 0 chr9 110895639 110895821 -13180351 - B2_Mm2 SINE B2 0 195 2 8 1431 748 204 6 6 chr9 110896419 110896596 -13179576 + CT-rich Low_complexity Low_complexity 2 178 0 9 1431 601 27 0 0 chr9 110896732 110896805 -13179367 + B1_Mur4 SINE Alu 75 147 -3 9 1431 227 56 56 0 chr9 110896806 110896842 -13179330 + (GAAAA)n Simple_repeat Simple_repeat 1 38 0 9 1431 235 275 72 78 chr9 110897383 110897576 -13178596 + RMER17C LTR ERVK 6 197 -213 9 1431 354 222 129 32 chr9 110897702 110897795 -13178377 - B4 SINE B4 -110 182 81 9 1431 225 0 0 0 chr9 110897795 110897820 -13178352 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1431 2210 153 37 16 chr9 110898085 110898463 -13177709 + MTC LTR MaLR 35 420 -1 9 1431 242 205 77 0 chr9 110898465 110898543 -13177629 + L1MC3 LINE L1 6985 7068 -927 9 1431 433 343 27 106 chr9 110898547 110898598 -13177574 + B4 SINE B4 36 84 -208 9 1431 863 186 163 6 chr9 110898598 110898776 -13177396 + B3 SINE B2 1 206 -10 9 1431 433 348 29 110 chr9 110898776 110899002 -13177170 + B4 SINE B4 81 289 -3 9 1431 303 28 0 0 chr9 110899034 110899070 -13177102 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1431 364 140 5 31 chr9 110899162 110899232 -13176940 + B1_Mm SINE Alu 57 145 -2 9 1431 281 26 0 26 chr9 110899287 110899326 -13176846 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 9 1431 252 257 92 42 chr9 110899436 110899578 -13176594 + L1MC3 LINE L1 7633 7781 -4 9 1431 535 269 0 40 chr9 110899593 110899703 -13176469 + PB1D9 SINE Alu 2 110 -10 9 1431 180 77 0 0 chr9 110899703 110899729 -13176443 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 9 1431 535 269 0 40 chr9 110899729 110899742 -13176430 + PB1D9 SINE Alu 111 120 0 9 1431 185 273 36 83 chr9 110899983 110900067 -13176105 + L3 LINE CR1 4408 4487 -2 9 1431 555 159 33 7 chr9 110900949 110901101 -13175071 + (TG)n Simple_repeat Simple_repeat 1 156 0 9 1431 287 241 102 52 chr9 110901150 110901266 -13174906 - B4A SINE B4 -167 125 2 9 1431 345 224 32 65 chr9 110902296 110902420 -13173752 - L1ME3A LINE L1 -8 6165 6046 9 1431 715 271 80 51 chr9 110902572 110902848 -13173324 + MER63D DNA AcHobo 210 493 -568 9 1431 304 174 258 11 chr9 110902961 110903054 -13173118 + PB1D10 SINE Alu 1 116 -1 9 1431 206 62 31 0 chr9 110903075 110903107 -13173065 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 9 1431 311 270 74 50 chr9 110903119 110903240 -13172932 - L1MEf LINE L1 -4088 2112 1989 9 1431 881 181 0 0 chr9 110903244 110903393 -13172779 - B1_Mur3 SINE Alu 0 149 1 9 1431 402 245 85 0 chr9 110903397 110903491 -13172681 - PB1D10 SINE Alu -6 111 10 9 1431 992 237 24 5 chr9 110904635 110904847 -13171325 - ID_B1 SINE B4 -8 216 1 9 1431 237 286 76 67 chr9 110904856 110904961 -13171211 - B3 SINE B2 -5 211 106 9 1431 665 281 111 11 chr9 110904910 110905090 -13171082 - B4 SINE B4 -12 280 83 9 1431 1480 65 16 0 chr9 110905226 110905411 -13170761 + B2_Mm2 SINE B2 2 189 -6 9 1431 812 302 112 62 chr9 110906009 110906383 -13169789 - MTD LTR MaLR -14 405 13 9 1431 1245 54 7 0 chr9 110906635 110906782 -13169390 - B1_Mus1 SINE Alu 0 148 1 9 1431 228 86 0 0 chr9 110906974 110907009 -13169163 + (TC)n Simple_repeat Simple_repeat 1 35 0 9 1431 870 263 143 12 chr9 110907556 110907814 -13168358 - B4 SINE B4 0 292 1 9 1431 453 294 143 37 chr9 110907885 110908206 -13167966 + L2 LINE L2 2410 2764 -655 9 1431 188 162 0 51 chr9 110908561 110908600 -13167572 + L2c LINE L2 3287 3323 -64 9 1431 982 251 65 79 chr9 110908677 110908967 -13167205 - B4 SINE B4 -2 290 5 9 1431 325 348 46 41 chr9 110909760 110909955 -13166217 - L1MCb LINE L1 -5269 776 581 9 1431 459 260 165 0 chr9 110910875 110911002 -13165170 + MTEb LTR MaLR 231 378 -1 9 1431 608 289 49 0 chr9 110911790 110911932 -13164240 + ID_B1 SINE B4 74 222 -2 9 1431 1121 219 16 65 chr9 110912573 110912944 -13163228 + RMER17C LTR ERVK 1 353 -57 9 1431 599 251 128 5 chr9 110913014 110913251 -13162921 - MTE2a LTR MaLR 0 379 101 9 1431 513 0 0 0 chr9 110913298 110913355 -13162817 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 9 1431 1148 103 0 6 chr9 110913355 110913469 -13162703 + (TTC)n Simple_repeat Simple_repeat 1 114 0 9 1431 1347 72 0 0 chr9 110913469 110913649 -13162523 + (TCC)n Simple_repeat Simple_repeat 1 180 0 9 1431 1148 103 0 6 chr9 110913649 110913709 -13162463 + (TTC)n Simple_repeat Simple_repeat 1 60 0 9 1431 1058 149 0 0 chr9 110915792 110915940 -13160232 + B1_Mur1 SINE Alu 1 148 -1 9 1431 203 79 26 0 chr9 110915947 110915985 -13160187 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 9 1431 462 79 0 0 chr9 110916339 110916402 -13159770 + (CTCA)n Simple_repeat Simple_repeat 1 63 0 9 1431 926 253 24 4 chr9 110916510 110916834 -13159338 + L1MA4 LINE L1 5554 5928 -1545 9 1431 402 179 15 7 chr9 110916841 110916976 -13159196 + (TG)n Simple_repeat Simple_repeat 2 137 0 9 1431 182 160 20 0 chr9 110917023 110917073 -13159099 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1431 367 201 13 20 chr9 110917090 110917242 -13158930 + (TG)n Simple_repeat Simple_repeat 2 152 0 9 1431 380 216 20 20 chr9 110917255 110917354 -13158818 + (TG)n Simple_repeat Simple_repeat 2 100 0 9 1431 370 178 5 70 chr9 110917354 110917541 -13158631 + (TATG)n Simple_repeat Simple_repeat 4 178 0 9 1431 214 281 22 22 chr9 110917628 110917719 -13158453 + G-rich Low_complexity Low_complexity 2 92 0 9 1431 192 77 0 0 chr9 110917729 110917755 -13158417 + (GGA)n Simple_repeat Simple_repeat 1 26 0 9 1431 357 313 12 24 chr9 110917767 110917937 -13158235 + G-rich Low_complexity Low_complexity 5 172 0 9 1431 317 347 6 22 chr9 110917861 110918041 -13158131 + GA-rich Low_complexity Low_complexity 1 177 0 9 1431 874 228 96 0 chr9 110918228 110918425 -13157747 + B3 SINE B2 1 216 0 9 1431 1382 56 16 48 chr9 110918431 110918619 -13157553 + B2_Mm2 SINE B2 2 183 -12 9 1431 621 40 0 0 chr9 110918625 110918701 -13157471 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 9 1431 642 230 22 7 chr9 110919495 110919631 -13156541 - MTD LTR MaLR -281 138 1 9 1431 616 274 10 121 chr9 110920495 110920694 -13155478 + B3A SINE B2 1 177 -21 9 1431 1183 68 14 0 chr9 110920752 110920898 -13155274 - B1_Mus1 SINE Alu 0 148 1 9 1431 356 266 72 65 chr9 110921003 110921156 -13155016 + HAL1-3A_ME LINE L1 1975 2128 -730 9 1431 229 246 57 14 chr9 110922281 110922351 -13153821 + B4 SINE B4 6 78 -214 9 1431 346 190 0 33 chr9 110922395 110922455 -13153717 + B1_Mus2 SINE Alu 2 59 -88 9 1431 265 158 110 73 chr9 110922517 110922626 -13153546 + RLTR25B LTR ERVK 397 509 -519 9 1431 664 100 80 0 chr9 110922561 110922661 -13153511 + B1_Mur4 SINE Alu 43 150 0 9 1431 325 272 127 29 chr9 110922717 110923031 -13153141 - L1MB7 LINE L1 -329 5855 5511 9 1431 573 224 0 0 chr9 110923958 110924065 -13152107 + B4A SINE B4 169 275 -17 9 1431 261 0 0 0 chr9 110924088 110924117 -13152055 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1431 1229 168 64 0 chr9 110926264 110926467 -13149705 - B3 SINE B2 0 216 1 9 1431 324 0 0 0 chr9 110928912 110928948 -13147224 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1431 387 0 0 0 chr9 110928948 110928990 -13147182 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1431 710 264 20 31 chr9 110929188 110929383 -13146789 - B3A SINE B2 -5 193 1 9 1431 555 276 26 40 chr9 110930137 110930288 -13145884 + RSINE1 SINE B4 2 150 -15 9 1431 23 54 0 0 chr9 110930299 110930336 -13145836 + AT_rich Low_complexity Low_complexity 1 37 0 9 1431 717 327 73 7 chr9 110930435 110930845 -13145327 - L1ME3A LINE L1 -103 6070 5634 9 1431 253 287 48 75 chr9 110931154 110931360 -13144812 - MIRc SINE MIR -65 203 3 9 1431 1020 96 0 0 chr9 110931761 110931907 -13144265 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 9 1431 240 59 0 0 chr9 110932526 110932560 -13143612 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1431 423 0 0 0 chr9 110932592 110932639 -13143533 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 9 1431 1313 25 0 59 chr9 110932639 110932808 -13143364 - B2_Mm1a SINE B2 -33 160 2 9 1431 1264 71 53 37 chr9 110932890 110933080 -13143092 + B2_Mm2 SINE B2 2 194 -1 9 1431 379 256 217 36 chr9 110934005 110934171 -13142001 + B3A SINE B2 1 196 -2 9 1431 1507 43 33 0 chr9 110934350 110934534 -13141638 + B2_Mm2 SINE B2 1 190 -5 9 1431 1193 29 0 0 chr9 110934710 110934846 -13141326 + B1_Mus1 SINE Alu 1 136 -12 9 1431 315 0 0 0 chr9 110934847 110934882 -13141290 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1431 567 196 196 58 chr9 110935369 110935542 -13140630 + B3A SINE B2 2 198 0 9 1431 310 270 24 80 chr9 110935552 110935677 -13140495 - L1MCa LINE L1 -4490 2018 1901 9 1431 538 191 15 0 chr9 110935678 110935814 -13140358 + (CA)n Simple_repeat Simple_repeat 2 139 0 9 1431 975 267 82 9 chr9 110935828 110936157 -13140015 - L1MA4 LINE L1 -369 5931 5579 9 1431 307 273 69 10 chr9 110936406 110936508 -13139664 - RSINE1 SINE B4 -185 107 1 9 1431 323 328 128 94 chr9 110936508 110936792 -13139380 - HAL1 LINE L1 -1076 1431 1136 9 1431 1205 177 0 31 chr9 110936792 110936816 -13139356 - B3 SINE B2 -1 215 196 9 1431 195 69 0 0 chr9 110936816 110936845 -13139327 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 9 1431 1205 177 0 31 chr9 110936845 110937042 -13139130 - B3 SINE B2 -21 195 1 9 1431 323 328 128 94 chr9 110937042 110937194 -13138978 - HAL1 LINE L1 -1372 1135 980 9 1431 507 257 9 0 chr9 110937571 110937680 -13138492 - PB1D7 SINE Alu -10 110 1 9 1431 265 358 50 19 chr9 110937819 110938078 -13138094 - HAL1 LINE L1 -2194 313 47 9 1431 288 77 0 0 chr9 110938474 110938513 -13137659 + (TC)n Simple_repeat Simple_repeat 1 39 0 9 1431 427 318 45 15 chr9 110938513 110938647 -13137525 - B1F SINE Alu 0 149 12 9 1431 492 197 19 13 chr9 110938729 110938883 -13137289 + (CATA)n Simple_repeat Simple_repeat 4 158 0 9 1431 432 150 0 0 chr9 110938923 110939003 -13137169 + (CA)n Simple_repeat Simple_repeat 2 81 0 9 1431 705 70 0 0 chr9 110939458 110939558 -13136614 + (TG)n Simple_repeat Simple_repeat 1 100 0 9 1431 609 254 36 219 chr9 110940268 110940625 -13135547 + B4A SINE B4 1 292 0 9 1431 1077 114 69 0 chr9 110940639 110940814 -13135358 - B2_Mm2 SINE B2 -7 188 2 1 1431 453 308 140 19 chr9 110940827 110941141 -13135031 - L1MB7 LINE L1 -9 6175 5824 1 1431 2087 202 63 67 chr9 110941776 110942285 -13133887 + RLTR18B LTR ERVK 1 507 -5 1 1431 955 220 14 23 chr9 110943126 110943340 -13132832 + B3 SINE B2 1 212 -4 1 1431 974 256 50 28 chr9 110943388 110943658 -13132514 + ID_B1 SINE B4 4 292 0 1 1431 750 154 0 0 chr9 110943658 110943788 -13132384 + (CA)n Simple_repeat Simple_repeat 1 130 0 1 1431 497 326 74 17 chr9 110943935 110944110 -13132062 + MER20 DNA MER1_type 1 185 -34 1 1431 4356 162 50 69 chr9 110945252 110946221 -13129951 - Lx3C LINE L1 -3 6973 6024 1 1431 742 274 8 117 chr9 110946225 110946254 -13129918 - B4 SINE B4 -62 230 211 1 1431 1099 137 132 223 chr9 110946254 110946416 -13129756 - MTD LTR MaLR 0 419 224 1 1431 700 59 10 10 chr9 110946416 110946519 -13129653 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 1 1431 1099 137 132 223 chr9 110946519 110946817 -13129355 - MTD LTR MaLR -196 223 1 1 1431 742 274 8 117 chr9 110946817 110946966 -13129206 - B4 SINE B4 -82 210 72 1 1431 2057 121 78 8 chr9 110946966 110947349 -13128823 - RMER17C LTR ERVK 0 410 1 1 1431 742 274 8 117 chr9 110947349 110947425 -13128747 - B4 SINE B4 -221 71 3 1 1431 916 143 7 7 chr9 110947784 110947932 -13128240 + B1_Mur2 SINE Alu 1 148 -1 1 1431 231 314 58 36 chr9 110948123 110948262 -13127910 - MLT1I LTR MaLR -99 312 171 1 1431 2883 46 3 17 chr9 110948313 110948664 -13127508 + ORR1A1 LTR MaLR 1 346 0 1 1431 844 235 107 104 chr9 110948768 110949124 -13127048 + ORR1E LTR MaLR 1 357 -2 1 1431 645 201 178 59 chr9 110949124 110949261 -13126911 + B3 SINE B2 1 163 -53 1 1431 423 0 0 0 chr9 110949261 110949308 -13126864 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 1431 645 201 178 59 chr9 110949308 110949339 -13126833 + B3 SINE B2 164 189 -27 1 1431 1035 237 0 24 chr9 110949354 110949566 -13126606 - B3 SINE B2 -4 212 6 1 1431 535 229 0 16 chr9 110949580 110949762 -13126410 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1431 360 291 36 64 chr9 110949785 110949895 -13126277 + B3A SINE B2 44 150 -48 1 1431 351 0 0 0 chr9 110950365 110950404 -13125768 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 1431 213 39 0 0 chr9 110950412 110950438 -13125734 + (GTTTG)n Simple_repeat Simple_repeat 5 30 0 1 1431 921 153 0 0 chr9 110950439 110950576 -13125596 - B1_Mus1 SINE Alu -6 142 6 1 1431 1061 236 180 3 chr9 110951919 110952089 -13124083 + MTD LTR MaLR 46 233 -186 1 1431 2325 153 91 63 chr9 110952089 110952539 -13123633 - RLTR31_Mur LTR ERVK 0 553 88 1 1431 450 0 0 0 chr9 110952539 110952589 -13123583 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1431 2325 153 91 63 chr9 110952589 110952676 -13123496 - RLTR31_Mur LTR ERVK -466 87 2 1 1431 1061 240 168 4 chr9 110952676 110952826 -13123346 + MTD LTR MaLR 234 404 -15 1 1431 624 27 0 0 chr9 110953546 110953620 -13122552 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1431 544 299 35 7 chr9 110954390 110954535 -13121637 - RSINE1 SINE B4 -15 150 2 1 1431 180 0 0 0 chr9 110954899 110954919 -13121253 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 1 1431 552 306 54 69 chr9 110955429 110955617 -13120555 - L1M4 LINE L1 -413 5771 5582 1 1431 963 114 14 7 chr9 110955617 110955758 -13120414 + B1_Mus2 SINE Alu 5 146 -1 1 1431 552 306 54 69 chr9 110955758 110955829 -13120343 - L1M4 LINE L1 -603 5581 5516 1 1431 627 222 0 0 chr9 110955852 110956090 -13120082 + (TG)n Simple_repeat Simple_repeat 1 238 0 1 1431 664 268 12 25 chr9 110956114 110956275 -13119897 - RSINE1 SINE B4 0 165 7 1 1431 625 221 22 22 chr9 110956978 110957112 -13119060 - ID_B1 SINE B4 0 224 91 1 1431 671 148 0 34 chr9 110957118 110957237 -13118935 + B1_Mus2 SINE Alu 33 147 0 1 1431 22 0 0 0 chr9 110957340 110957362 -13118810 + AT_rich Low_complexity Low_complexity 1 22 0 1 1431 315 235 36 24 chr9 110957422 110957505 -13118667 - B1F2 SINE Alu -65 84 1 1 1431 306 327 25 10 chr9 110957531 110957632 -13118540 + MIR SINE MIR 22 133 -135 1 1431 366 23 0 0 chr9 110961300 110961343 -13114829 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1431 234 284 0 0 chr9 110961346 110961427 -13114745 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1431 400 275 36 17 chr9 110961460 110961616 -13114556 - L1MA4 LINE L1 -362 5938 5777 1 1431 243 348 0 14 chr9 110961769 110961839 -13114333 - ID4_ SINE ID -2 81 13 1 1431 349 222 43 22 chr9 110961845 110961937 -13114235 - L1MA4 LINE L1 -326 5521 5428 1 1431 280 288 97 69 chr9 110962209 110962384 -13113788 - ORR1E LTR MaLR -179 180 1 1 1431 313 312 55 64 chr9 110962530 110962675 -13113497 - L2b LINE L2 0 3426 3256 1 1431 2867 121 58 35 chr9 110962675 110963139 -13113033 + MT2C_Mm LTR ERVL 1 475 0 1 1431 299 341 86 56 chr9 110963139 110963260 -13112912 - L2b LINE L2 -153 3273 3152 1 1431 252 211 64 9 chr9 110963393 110963503 -13112669 + (TA)n Simple_repeat Simple_repeat 2 117 0 1 1431 274 175 26 95 chr9 110963526 110963715 -13112457 + (TTAA)n Simple_repeat Simple_repeat 2 177 0 1 1431 203 219 49 25 chr9 110963697 110963819 -13112353 + (TATAA)n Simple_repeat Simple_repeat 2 126 0 1 1431 22 0 0 0 chr9 110963819 110963841 -13112331 + AT_rich Low_complexity Low_complexity 1 22 0 1 1431 609 182 45 53 chr9 110963845 110963978 -13112194 - B1_Mur1 SINE Alu -17 132 1 1 1431 307 279 138 6 chr9 110964054 110964213 -13111959 + LTR41 LTR ERVL 561 740 -28 1 1431 1354 81 22 0 chr9 110964294 110964479 -13111693 - B2_Mm1t SINE B2 -3 190 2 1 1431 1230 41 7 0 chr9 110964535 110964680 -13111492 + B1_Mus2 SINE Alu 2 147 0 1 1431 339 203 54 34 chr9 110964719 110964867 -13111305 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 1 1431 385 356 75 21 chr9 110965043 110965284 -13110888 - LTR16A LTR ERVL -5 446 193 1 1431 436 308 76 8 chr9 110965843 110965974 -13110198 + B4 SINE B4 134 273 -19 1 1431 260 250 43 29 chr9 110966051 110966121 -13110051 + B4 SINE B4 1 71 -221 1 1431 189 0 0 0 chr9 110966127 110966148 -13110024 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1431 1050 53 0 0 chr9 110966148 110966280 -13109892 + (GGGAGA)n Simple_repeat Simple_repeat 6 138 0 1 1431 213 224 16 49 chr9 110966800 110966861 -13109311 + L2 LINE L2 2047 2105 -1314 1 1431 297 0 0 0 chr9 110966876 110966909 -13109263 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1431 1075 202 126 16 chr9 110966931 110967178 -13108994 - B4 SINE B4 -18 274 1 1 1431 682 224 20 7 chr9 110967664 110967817 -13108355 + RSINE1 SINE B4 2 156 -9 1 1431 1354 235 75 65 chr9 110967907 110968301 -13107871 + RMER5 LTR ERV1 1 398 -136 1 1431 898 165 26 20 chr9 110968301 110968488 -13107684 + B3 SINE B2 2 192 -1 1 1431 237 208 38 0 chr9 110968506 110968558 -13107614 + RMER5 LTR ERV1 379 432 -102 1 1431 1442 226 70 3 chr9 110968558 110968887 -13107285 - ORR1D2 LTR MaLR 0 370 20 1 1431 651 205 113 69 chr9 110969029 110969233 -13106939 - RMER20B LTR ERVK -210 417 205 1 1431 1285 157 114 48 chr9 110969242 110969654 -13106518 - RLTR1B LTR ERV1 -76 436 25 1 1431 258 245 104 38 chr9 110969639 110969745 -13106427 - RMER20B LTR ERVK -386 241 129 1 1431 495 212 20 10 chr9 110969881 110969981 -13106191 + RMER5 LTR ERV1 434 534 0 1 1431 512 293 82 89 chr9 110970444 110970784 -13105388 + MTEa LTR MaLR 1 357 -13 1 1431 414 291 63 14 chr9 110970800 110970943 -13105229 - MER20 DNA MER1_type -68 151 2 1 1431 417 20 0 0 chr9 110971200 110971250 -13104922 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1431 239 323 29 64 chr9 110971886 110972058 -13104114 - RLTR40 LTR ERVK -252 565 400 1 1431 180 152 0 0 chr9 110972154 110972187 -13103985 + GA-rich Low_complexity Low_complexity 1 33 0 1 1431 1170 117 0 0 chr9 110972187 110972366 -13103806 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1431 767 223 41 59 chr9 110973075 110973294 -13102878 - B3 SINE B2 0 216 2 1 1431 367 313 26 9 chr9 110973480 110973596 -13102576 + MER63B DNA AcHobo 278 395 -41 1 1431 35 0 0 0 chr9 110973617 110973652 -13102520 + AT_rich Low_complexity Low_complexity 1 35 0 1 1431 351 267 8 87 chr9 110974327 110974454 -13101718 + PB1D10 SINE Alu 1 117 0 1 1431 592 284 110 46 chr9 110974812 110975184 -13100988 - ERVL-E-int LTR ERVL -1401 4266 3871 1 1431 1218 249 71 81 chr9 110975190 110975719 -13100453 + RMER20B LTR ERVK 1 612 -15 1 1431 335 285 96 37 chr9 110975868 110976003 -13100169 - ERVL-E-int LTR ERVL -1988 3679 3537 1 1431 1068 279 78 10 chr9 110976082 110976390 -13099782 + MLT1A0 LTR MaLR 35 363 -2 1 1431 288 0 0 0 chr9 110976507 110976539 -13099633 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1431 966 265 50 35 chr9 110976544 110976843 -13099329 - ORR1E LTR MaLR -23 336 35 1 1431 25 0 0 0 chr9 110976870 110976895 -13099277 + AT_rich Low_complexity Low_complexity 1 25 0 1 1431 3154 226 49 69 chr9 110976895 110977996 -13098176 + RLTR25A LTR ERVK 1 950 -153 1 1431 302 198 32 21 chr9 110978024 110978117 -13098055 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 1431 508 274 76 152 chr9 110978153 110978322 -13097850 + B3A SINE B2 3 159 -39 1 1431 372 94 0 0 chr9 110978322 110978375 -13097797 + (CACG)n Simple_repeat Simple_repeat 1 53 0 1 1431 268 274 76 152 chr9 110978375 110978403 -13097769 + B2_Mm2 SINE B2 159 185 -10 1 1431 439 331 96 53 chr9 110978407 110978876 -13097296 + L1M5 LINE L1 2968 3456 -2690 1 1431 213 194 0 0 chr9 110978938 110978974 -13097198 + G-rich Low_complexity Low_complexity 4 39 0 1 1431 882 170 14 0 chr9 110979373 110979514 -13096658 + B1_Mur2 SINE Alu 1 143 -6 1 1431 1305 83 0 0 chr9 110979519 110979699 -13096473 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1431 1329 115 16 5 chr9 110979703 110979880 -13096292 + B2_Mm2 SINE B2 1 180 -15 1 1431 186 43 0 0 chr9 110979880 110979903 -13096269 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1431 1329 115 16 5 chr9 110979903 110979917 -13096255 + B2_Mm2 SINE B2 181 194 -1 1 1431 291 231 0 0 chr9 110979919 110979984 -13096188 - L1MA9 LINE L1 -173 6139 6075 1 1431 734 203 94 52 chr9 110980025 110980238 -13095934 + ORR1D2 LTR MaLR 1 222 -148 1 1431 690 196 30 8 chr9 110980656 110980790 -13095382 + ORR1D2 LTR MaLR 225 361 -9 1 1431 228 67 0 0 chr9 110981309 110981339 -13094833 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1431 875 241 32 5 chr9 110981354 110981542 -13094630 - ID_B1 SINE B4 -24 200 8 1 1431 861 150 0 36 chr9 110981778 110981944 -13094228 + RMER6B LTR ERVK 287 446 -15 1 1431 198 0 0 0 chr9 110981947 110981969 -13094203 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1431 397 114 27 54 chr9 110982274 110982348 -13093824 + RMER20A LTR ERVK 1 72 -444 1 1431 1331 143 86 4 chr9 110982345 110982577 -13093595 + RMER20A LTR ERVK 266 516 0 1 1431 1139 238 19 19 chr9 110982764 110983030 -13093142 - RMER20A LTR ERVK -7 509 244 1 1431 1772 142 75 22 chr9 110983025 110983384 -13092788 - RMER17C LTR ERVK -32 378 1 1 1431 2427 167 29 19 chr9 110983641 110983847 -13092325 + MTC LTR MaLR 8 225 -196 1 1431 3059 76 10 2 chr9 110983847 110984244 -13091928 - MTB LTR MaLR 0 400 1 1 1431 2427 167 29 19 chr9 110984244 110984447 -13091725 + MTC LTR MaLR 226 421 0 1 1431 1334 172 79 97 chr9 110985281 110985662 -13090510 - ORR1D1 LTR MaLR 0 374 1 1 1431 738 159 6 28 chr9 110985780 110985837 -13090335 + polypyrimidine Low_complexity Low_complexity 121 177 0 1 1431 959 94 0 37 chr9 110985837 110986024 -13090148 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1431 738 159 6 28 chr9 110986024 110986147 -13090025 + polypyrimidine Low_complexity Low_complexity 2 120 0 1 1431 715 245 164 5 chr9 110986430 110986631 -13089541 + B4A SINE B4 1 233 -59 1 1431 645 257 0 26 chr9 110986634 110986786 -13089386 + B3A SINE B2 1 148 -50 1 1431 555 122 0 0 chr9 110986788 110986878 -13089294 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1431 414 265 0 0 chr9 110986947 110987030 -13089142 + RSINE1 SINE B4 55 137 -28 1 1431 216 0 0 0 chr9 110987050 110987074 -13089098 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1431 407 19 0 19 chr9 110987467 110987520 -13088652 + (GGAGA)n Simple_repeat Simple_repeat 4 55 0 1 1431 1047 94 156 0 chr9 110987586 110987746 -13088426 + B2_Mm2 SINE B2 1 185 -10 1 1431 1712 176 39 53 chr9 110987853 110988212 -13087960 + RMER15 LTR ERVL 222 575 0 1 1431 582 294 48 12 chr9 110989079 110989244 -13086928 - B4 SINE B4 -36 256 86 1 1431 677 229 72 61 chr9 110989337 110989518 -13086654 - B3 SINE B2 -11 205 23 1 1431 448 190 94 12 chr9 110989519 110989604 -13086568 - B4 SINE B4 -196 96 5 1 1431 201 250 0 37 chr9 110989617 110989671 -13086501 + T-rich Low_complexity Low_complexity 5 56 0 1 1431 333 0 0 0 chr9 110990296 110990333 -13085839 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1431 651 238 24 0 chr9 110990341 110990467 -13085705 - ID_B1 SINE B4 -3 221 93 1 1431 1136 191 182 64 chr9 110990613 110990807 -13085365 + RMER10B LTR ERVL 9 235 -163 1 1431 438 36 0 0 chr9 110990807 110990863 -13085309 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1431 1136 191 182 64 chr9 110990863 110991014 -13085158 + RMER10B LTR ERVL 236 394 -4 1 1431 23 0 0 0 chr9 110991033 110991056 -13085116 + GC_rich Low_complexity Low_complexity 1 23 0 1 1431 868 148 331 38 chr9 110991707 110991860 -13084312 - RMER17C LTR ERVK 0 410 193 1 1431 486 0 0 0 chr9 110991860 110991914 -13084258 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1431 868 148 331 38 chr9 110991914 110992077 -13084095 - RMER17C LTR ERVK -218 192 2 1 1431 630 148 62 27 chr9 110992978 110993123 -13083049 - B3 SINE B2 -20 175 27 1 1431 1268 40 0 0 chr9 110993154 110993302 -13082870 - B1_Mus1 SINE Alu 0 148 1 1 1431 278 264 90 22 chr9 110993417 110993506 -13082666 + RMER10A LTR ERVL 318 412 -30 1 1431 668 272 7 0 chr9 110994859 110995006 -13081166 - RSINE1 SINE B4 -16 149 2 1 1431 396 295 108 0 chr9 110995270 110995436 -13080736 + LTR16A1 LTR ERVL 181 364 -92 1 1431 241 278 0 0 chr9 110995595 110995649 -13080523 + L3 LINE CR1 4261 4314 -175 1 1431 475 303 7 27 chr9 110995986 110996132 -13080040 + B4A SINE B4 1 143 -149 1 1431 419 197 58 27 chr9 110996147 110996267 -13079905 + MLT1F2 LTR MaLR 421 548 -12 1 1431 511 228 10 0 chr9 110996408 110996509 -13079663 - RSINE1 SINE B4 -63 102 1 1 1431 307 91 308 76 chr9 110996585 110996702 -13079470 + B2_Mm2 SINE B2 47 190 -5 1 1431 1676 200 47 25 chr9 110996682 110997041 -13079131 + MTD LTR MaLR 39 405 -14 1 1431 292 333 96 9 chr9 110997258 110997373 -13078799 + MIRc SINE MIR 73 197 -71 1 1431 180 276 50 121 chr9 110997399 110997498 -13078674 + MIRb SINE MIR 92 183 -85 1 1431 1232 235 43 4 chr9 110997767 110998045 -13078127 - RMER1C Other Other -227 1115 827 1 1431 339 193 0 0 chr9 110998064 110998147 -13078025 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1431 1143 225 59 52 chr9 110998150 110998436 -13077736 - B4 SINE B4 -2 290 3 1 1431 600 163 97 62 chr9 110999282 110999426 -13076746 - B1_Mur4 SINE Alu 0 150 2 1 1431 221 72 0 82 chr9 110999666 110999727 -13076445 + G-rich Low_complexity Low_complexity 5 60 0 1 1431 342 304 174 35 chr9 111000177 111000521 -13075651 - LTR16A1 LTR ERVL 0 456 65 1 1431 21 0 0 0 chr9 111000623 111000644 -13075528 + AT_rich Low_complexity Low_complexity 1 21 0 2 1431 415 191 0 35 chr9 111000697 111000784 -13075388 + B4A SINE B4 4 87 -205 3 1431 936 169 0 0 chr9 111000789 111000967 -13075205 + GA-rich Low_complexity Low_complexity 3 180 0 4 1431 663 280 11 11 chr9 111001010 111001187 -13074985 + B4 SINE B4 116 292 0 3 1431 416 249 7 28 chr9 111001218 111001343 -13074829 + PB1D10 SINE Alu 4 119 -1 5 1431 632 228 43 87 chr9 111001349 111001556 -13074616 + B3A SINE B2 1 198 0 6 1431 354 257 0 12 chr9 111001706 111001805 -13074367 - ID4 SINE ID -53 99 2 7 1431 337 217 131 9 chr9 111001805 111001912 -13074260 - MER58B DNA MER1_type -221 120 1 8 1431 547 256 60 7 chr9 111002114 111002302 -13073870 - B3A SINE B2 -11 205 4 9 1431 210 191 0 0 chr9 111002319 111002361 -13073811 + CT-rich Low_complexity Low_complexity 2 43 0 1 1431 569 206 9 0 chr9 111002363 111002470 -13073702 - B1_Mus1 SINE Alu -40 108 1 1 1431 500 107 0 46 chr9 111002470 111002578 -13073594 + T-rich Low_complexity Low_complexity 1 103 0 1 1431 907 69 0 0 chr9 111002581 111002711 -13073461 - L1Md_A LINE L1 0 6582 6453 1 1431 343 298 16 16 chr9 111002888 111003014 -13073158 - MIRc SINE MIR 0 268 143 1 1431 536 286 216 13 chr9 111003776 111004077 -13072095 - MLT1A0 LTR MaLR -3 362 1 1 1431 3624 180 37 34 chr9 111004118 111005005 -13071167 + Lx4B LINE L1 6111 7047 -3 1 1431 1216 61 0 0 chr9 111005088 111005235 -13070937 - B1_Mus1 SINE Alu 0 148 2 1 1431 579 268 77 22 chr9 111005257 111005440 -13070732 - B3 SINE B2 0 216 24 1 1431 439 278 4 13 chr9 111006103 111006295 -13069877 - L1MA4A LINE L1 -373 5930 5709 1 1431 242 263 64 26 chr9 111006832 111006910 -13069262 - PB1D10 SINE Alu -36 81 1 2 1431 261 291 107 69 chr9 111006967 111007022 -13069150 - B4A SINE B4 -53 239 75 2 1431 579 161 128 8 chr9 111006987 111007112 -13069060 - B1_Mur4 SINE Alu 0 150 11 2 1431 374 185 0 115 chr9 111007022 111007126 -13069046 - MT2B LTR ERVL -344 257 166 2 1431 804 122 58 0 chr9 111007324 111007463 -13068709 + URR1A DNA MER1_type 80 226 0 2 1431 570 29 0 0 chr9 111007809 111007877 -13068295 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1431 351 0 0 0 chr9 111007877 111007915 -13068257 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1431 1129 199 14 10 chr9 111008075 111008283 -13067889 + B3 SINE B2 1 209 -7 2 1431 288 77 0 0 chr9 111008301 111008340 -13067832 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 2 1431 694 250 7 20 chr9 111008347 111008483 -13067689 + B1_Mur1 SINE Alu 1 137 -12 2 1431 342 0 0 0 chr9 111008483 111008521 -13067651 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1431 694 250 7 20 chr9 111008521 111008535 -13067637 + B1_Mur1 SINE Alu 138 149 0 2 1431 504 320 152 30 chr9 111008715 111009143 -13067029 + L2 LINE L2 2324 2803 -616 3 1431 237 250 154 18 chr9 111009217 111009327 -13066845 + L1M5 LINE L1 5759 5883 -241 3 1431 337 252 114 57 chr9 111009893 111009998 -13066174 - PB1D10 SINE Alu -5 112 2 3 1431 457 257 94 34 chr9 111010263 111010412 -13065760 + B3 SINE B2 51 208 -8 3 1431 1665 194 85 21 chr9 111010809 111011168 -13065004 - MTD LTR MaLR 0 419 36 3 1431 1200 201 170 15 chr9 111011168 111011492 -13064680 + ORR1D1 LTR MaLR 1 374 0 3 1431 1665 194 85 21 chr9 111011492 111011521 -13064651 - MTD LTR MaLR -384 35 6 3 1431 240 264 83 0 chr9 111011741 111011813 -13064359 - PB1D7 SINE Alu -26 94 17 3 1431 290 283 11 0 chr9 111011818 111011910 -13064262 + ORR1D2 LTR MaLR 1 93 -277 3 1431 10873 58 0 1 chr9 111011910 111013237 -13062935 + L1_Mm LINE L1 4260 5586 -297 3 1431 8416 36 4 7 chr9 111013237 111013265 -13062907 + L1Md_F2 LINE L1 5587 5614 -968 4 1431 3695 40 56 0 chr9 111013265 111013715 -13062457 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1431 8416 36 4 7 chr9 111013715 111014685 -13061487 + L1Md_F2 LINE L1 5615 6582 0 4 1431 10873 58 0 1 chr9 111014685 111014696 -13061476 + L1_Mm LINE L1 5587 5597 -286 3 1431 554 59 0 0 chr9 111014696 111014764 -13061408 + L1_Mus2 LINE L1 6178 6245 -321 4 1431 613 318 44 9 chr9 111014945 111015170 -13061002 - B4A SINE B4 -58 234 2 4 1431 336 258 8 62 chr9 111015197 111015325 -13060847 - Lx8 LINE L1 0 7473 7353 4 1431 2964 18 27 0 chr9 111015346 111015683 -13060489 - ORR1A0 LTR MaLR 0 346 1 4 1431 14271 50 7 5 chr9 111015683 111017470 -13058702 - ORR1A0-int LTR MaLR 0 1792 1 4 1431 2432 24 26 30 chr9 111017474 111017517 -13058655 - ORR1A0 LTR MaLR -8 338 302 4 1431 1536 58 0 16 chr9 111017517 111017709 -13058463 - B2_Mm1a SINE B2 -1 192 4 4 178 2432 24 26 30 chr9 111017709 111018004 -13058168 - ORR1A0 LTR MaLR -45 301 1 4 1432 26 30 0 0 chr9 111018016 111018049 -13058123 + AT_rich Low_complexity Low_complexity 1 33 0 4 1432 1146 75 7 0 chr9 111018052 111018198 -13057974 - B1_Mus2 SINE Alu 0 147 1 4 1432 649 241 56 47 chr9 111018206 111018419 -13057753 - B3A SINE B2 -1 215 1 4 1432 689 272 87 0 chr9 111018419 111018603 -13057569 - Lx8 LINE L1 -151 7322 7123 4 1432 234 220 0 0 chr9 111019359 111019409 -13056763 + B4A SINE B4 82 131 -161 5 1432 197 108 0 26 chr9 111020075 111020113 -13056059 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1432 406 333 54 7 chr9 111020127 111020275 -13055897 - ID_B1 SINE B4 -65 159 5 5 1432 186 43 0 0 chr9 111022497 111022520 -13053652 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 5 1432 222 37 0 0 chr9 111022906 111022933 -13053239 + (TTG)n Simple_repeat Simple_repeat 1 27 0 5 1432 294 273 8 76 chr9 111024519 111024534 -13051638 + MT2B LTR ERVL 152 158 -443 5 1432 668 171 43 0 chr9 111024534 111024651 -13051521 + B1_Mur1 SINE Alu 1 122 -27 5 1432 224 30 30 0 chr9 111024651 111024684 -13051488 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 5 1432 297 0 0 0 chr9 111025508 111025541 -13050631 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1432 838 282 58 134 chr9 111026997 111027044 -13049128 - L1MB3 LINE L1 0 6183 6140 5 1432 321 259 12 0 chr9 111027044 111027125 -13049047 - ID4_ SINE ID 0 83 2 6 1432 838 282 58 134 chr9 111027125 111027963 -13048209 - L1MB3 LINE L1 -44 6139 5366 5 1432 227 283 16 48 chr9 111027986 111028049 -13048123 - B4 SINE B4 -152 140 80 6 1432 742 228 43 38 chr9 111028060 111028270 -13047902 - B3 SINE B2 -5 211 1 6 1432 507 157 0 0 chr9 111028308 111028397 -13047775 + (CACG)n Simple_repeat Simple_repeat 3 91 0 6 1432 458 308 24 54 chr9 111028409 111028577 -13047595 - RSINE1 SINE B4 0 165 3 6 1432 447 229 134 26 chr9 111028602 111028821 -13047351 - L1M3 LINE L1 -867 5279 5027 6 1432 205 203 26 39 chr9 111028823 111028900 -13047272 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 6 1432 684 284 81 20 chr9 111028915 111029218 -13046954 - L1M3 LINE L1 -1094 5052 4735 6 1432 411 236 66 56 chr9 111029220 111029423 -13046749 - MTE2a LTR MaLR -40 379 137 6 1432 862 202 112 45 chr9 111029536 111029805 -13046367 - L1M3 LINE L1 -1535 4605 4319 6 1432 599 185 13 13 chr9 111029807 111029960 -13046212 + CT-rich Low_complexity Low_complexity 2 154 0 6 1432 569 311 50 71 chr9 111030096 111030626 -13045546 - MLT1E2 LTR MaLR -29 598 15 6 1432 381 270 72 0 chr9 111030829 111030940 -13045232 - B1F SINE Alu -18 131 13 7 1432 23 0 0 0 chr9 111031054 111031077 -13045095 + AT_rich Low_complexity Low_complexity 1 23 0 7 1432 328 264 0 0 chr9 111031475 111031547 -13044625 - ID4 SINE ID -3 80 9 7 1432 544 299 80 20 chr9 111031705 111031954 -13044218 - MLT1E2 LTR MaLR -181 267 4 6 1432 729 181 15 0 chr9 111033075 111033208 -13042964 - B1_Mur4 SINE Alu -5 145 11 7 1432 381 22 0 0 chr9 111033208 111033254 -13042918 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 7 1432 630 39 0 0 chr9 111033254 111033330 -13042842 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 7 1432 1140 65 0 0 chr9 111033341 111033480 -13042692 - B1_Mus2 SINE Alu -8 139 1 7 1432 576 274 117 34 chr9 111033489 111033754 -13042418 - L1MB7 LINE L1 -15 6169 5883 7 1432 351 215 81 0 chr9 111034183 111034278 -13041894 - RSINE1 SINE B4 -61 104 1 7 1432 259 287 318 26 chr9 111034858 111035083 -13041089 - B4A SINE B4 0 292 2 7 1432 8531 34 14 1 chr9 111035121 111036365 -13039807 - L1Md_F3 LINE L1 -1 6583 5329 8 1432 10361 50 5 1 chr9 111036365 111037670 -13038502 + L1_Mm LINE L1 2808 4117 -1766 8 1432 692 132 134 102 chr9 111037989 111038175 -13037997 - B2_Mm2 SINE B2 -3 192 1 8 1432 273 160 0 0 chr9 111038206 111038256 -13037916 - B1F1 SINE Alu -94 55 6 8 1432 256 243 28 14 chr9 111038256 111038277 -13037895 - ID_B1 SINE B4 -88 136 65 8 1432 670 258 73 91 chr9 111038466 111038875 -13037297 + L1M4 LINE L1 4412 4813 -1333 8 1432 739 243 194 25 chr9 111039091 111039374 -13036798 + L1M4 LINE L1 4829 5159 -987 8 1432 1105 211 10 0 chr9 111039377 111039586 -13036586 - B3 SINE B2 -4 212 2 8 1432 526 252 39 120 chr9 111039634 111039868 -13036304 + B3A SINE B2 1 215 -1 8 1432 686 148 39 15 chr9 111039936 111040066 -13036106 - B1_Mur1 SINE Alu 0 149 17 8 1432 591 286 134 50 chr9 111040274 111040295 -13035877 - B4A SINE B4 -8 284 268 8 1432 351 0 0 0 chr9 111040295 111040334 -13035838 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1432 591 286 134 50 chr9 111040334 111040573 -13035599 - B4A SINE B4 -25 267 2 8 1432 302 230 8 81 chr9 111041717 111041840 -13034332 - L1ME2z LINE L1 -231 6213 6100 9 1432 521 214 17 8 chr9 111042644 111042762 -13033410 - PB1D9 SINE Alu 0 120 2 9 1432 804 204 56 20 chr9 111042794 111042989 -13033183 + B3 SINE B2 1 202 -14 9 1432 198 0 0 0 chr9 111042995 111043017 -13033155 + (GAAAA)n Simple_repeat Simple_repeat 5 26 0 9 1432 21 0 0 0 chr9 111043721 111043742 -13032430 + AT_rich Low_complexity Low_complexity 1 21 0 9 1432 195 129 0 0 chr9 111044210 111044241 -13031931 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 9 1432 673 220 60 0 chr9 111044243 111044411 -13031761 - ID_B1 SINE B4 -4 220 43 9 1432 314 219 313 14 chr9 111044720 111044920 -13031252 + L1MB7 LINE L1 5888 6141 -43 9 1432 315 164 134 0 chr9 111045039 111045106 -13031066 - ID_B1 SINE B4 -22 202 127 9 1432 230 296 42 0 chr9 111045173 111045244 -13030928 - B4A SINE B4 0 292 219 1 1432 342 0 0 0 chr9 111045246 111045284 -13030888 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1432 390 278 45 0 chr9 111045287 111045420 -13030752 - RSINE1 SINE B4 -20 145 7 1 1432 590 240 74 30 chr9 111045417 111045619 -13030553 - B4A SINE B4 -56 236 26 1 1432 300 308 95 76 chr9 111045875 111046086 -13030086 + B4A SINE B4 6 220 -72 1 1432 2249 93 3 3 chr9 111046109 111046431 -13029741 + ORR1A2 LTR MaLR 6 327 0 1 1432 270 0 0 0 chr9 111046475 111046505 -13029667 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1432 2051 222 44 13 chr9 111046619 111047076 -13029096 - Lx8 LINE L1 0 7473 7003 1 1432 236 203 40 26 chr9 111047097 111047173 -13028999 - L1M2 LINE L1 -477 5823 5747 1 1432 1214 112 51 0 chr9 111047474 111047652 -13028520 + B2_Mm2 SINE B2 2 188 -7 1 1432 736 150 13 60 chr9 111047752 111047901 -13028271 - B1_Mur4 SINE Alu 0 150 9 1 1432 250 222 0 16 chr9 111048378 111048442 -13027730 - L2c LINE L2 -219 3168 3106 1 1432 342 287 53 59 chr9 111048808 111048960 -13027212 + MER20 DNA MER1_type 2 152 -67 1 1432 207 0 0 0 chr9 111050517 111050540 -13025632 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1432 402 261 4 0 chr9 111050806 111050915 -13025257 - PB1D10 SINE Alu 0 117 9 1 1432 382 286 67 11 chr9 111051786 111051966 -13024206 - L2 LINE L2 -1312 2107 1918 1 1432 447 289 16 0 chr9 111053912 111054033 -13022139 - PB1 SINE Alu -2 125 3 1 1432 261 0 0 0 chr9 111054412 111054441 -13021731 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1432 389 241 188 0 chr9 111054466 111054578 -13021594 - ID_B1 SINE B4 -9 215 83 1 1432 991 230 24 0 chr9 111054649 111054858 -13021314 + B3 SINE B2 3 216 0 1 1432 1506 276 75 24 chr9 111054931 111055570 -13020602 - L1MB8 LINE L1 -85 6095 5426 1 1432 13006 93 23 4 chr9 111055898 111058281 -13017891 - L1Md_F LINE L1 -2869 3014 584 1 1432 216 0 0 0 chr9 111058350 111058374 -13017798 + (CCCCCT)n Simple_repeat Simple_repeat 3 26 0 1 1432 702 115 19 0 chr9 111059121 111059225 -13016947 - B1_Mus2 SINE Alu -13 134 29 1 1432 1290 158 19 15 chr9 111059508 111059714 -13016458 - B3 SINE B2 -5 211 5 1 1432 1305 78 0 0 chr9 111059898 111060077 -13016095 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1432 281 289 21 48 chr9 111060094 111060202 -13015970 - PB1 SINE Alu -25 102 3 1 1432 520 219 57 25 chr9 111060208 111060330 -13015842 - B1F SINE Alu -2 147 22 1 1432 400 322 69 25 chr9 111060330 111060395 -13015777 - ID_B1 SINE B4 0 224 35 1 1432 985 326 59 18 chr9 111060582 111061138 -13015034 - L1MB4 LINE L1 -7 6173 5595 1 1432 773 224 18 30 chr9 111062188 111062354 -13013818 - B3 SINE B2 -10 206 43 1 1432 398 167 14 0 chr9 111062345 111062417 -13013755 - B1_Mur4 SINE Alu -34 116 44 1 1432 369 0 0 0 chr9 111062451 111062492 -13013680 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1432 302 183 29 0 chr9 111062562 111062631 -13013541 - B1_Mus2 SINE Alu -13 136 61 1 1432 1266 48 7 0 chr9 111066014 111066159 -13010013 - B1_Mus2 SINE Alu -1 146 1 1 1432 1821 223 63 12 chr9 111066424 111066823 -13009349 + MTD LTR MaLR 1 419 0 1 1432 802 160 0 22 chr9 111068028 111068162 -13008010 - B1_Mur1 SINE Alu -1 148 18 1 1432 995 224 25 20 chr9 111070705 111070901 -13005271 + B3 SINE B2 3 199 -17 1 1432 563 179 29 0 chr9 111071297 111071437 -13004735 + CT-rich Low_complexity Low_complexity 1 144 0 1 1432 354 243 0 13 chr9 111071502 111071577 -13004595 + ID4_ SINE ID 2 75 -8 1 1432 895 270 101 26 chr9 111072981 111073345 -13002827 - MTD LTR MaLR -25 394 18 1 1432 198 0 0 0 chr9 111073472 111073494 -13002678 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1432 1287 21 14 0 chr9 111073542 111073687 -13002485 - B1_Mm SINE Alu 0 147 1 1 1432 386 223 28 55 chr9 111074302 111074411 -13001761 - PB1D7 SINE Alu -1 119 14 1 1432 237 315 54 9 chr9 111074412 111074524 -13001648 - MER112 DNA MER1_type -102 159 43 1 1432 222 338 27 13 chr9 111075197 111075272 -13000900 + ID4_ SINE ID 1 76 -7 1 1432 187 54 26 26 chr9 111075715 111075753 -13000419 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 1 1432 195 42 0 0 chr9 111075956 111075980 -13000192 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1 1432 539 221 201 52 chr9 111076152 111076286 -12999886 - RSINE1 SINE B4 -10 155 2 1 1432 801 209 79 6 chr9 111077658 111077836 -12998336 + B3A SINE B2 2 192 -6 1 1432 385 193 97 44 chr9 111080127 111080241 -12995931 - PB1D7 SINE Alu 0 120 1 1 1432 221 210 32 0 chr9 111080395 111080457 -12995715 + T-rich Low_complexity Low_complexity 3 66 0 1 1432 820 144 91 0 chr9 111080569 111080701 -12995471 - B1_Mus1 SINE Alu -3 145 2 1 1432 285 29 0 0 chr9 111081486 111081520 -12994652 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1432 809 270 127 13 chr9 111083468 111083704 -12992468 - B4A SINE B4 -6 286 24 1 1432 1048 224 24 0 chr9 111083849 111084059 -12992113 - B3 SINE B2 0 216 2 1 1432 540 219 105 0 chr9 111084076 111084190 -12991982 - B1_Mus2 SINE Alu -19 128 3 1 1432 21 0 0 0 chr9 111084326 111084347 -12991825 + AT_rich Low_complexity Low_complexity 1 21 0 1 1432 327 49 0 0 chr9 111084473 111084514 -12991658 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1432 327 49 0 0 chr9 111085871 111085912 -12990260 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 1432 1270 54 0 0 chr9 111086855 111087002 -12989170 - B1_Mus2 SINE Alu 0 147 1 1 1432 315 0 0 0 chr9 111087262 111087298 -12988874 - U2 snRNA snRNA -152 36 1 1 1432 207 0 0 0 chr9 111087671 111087694 -12988478 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 1 1432 471 255 58 32 chr9 111088056 111088210 -12987962 - RSINE1 SINE B4 -2 163 6 1 1432 21 0 0 0 chr9 111089098 111089119 -12987053 + AT_rich Low_complexity Low_complexity 1 21 0 1 1432 25 31 0 0 chr9 111090008 111090040 -12986132 + AT_rich Low_complexity Low_complexity 1 32 0 1 1432 808 143 128 0 chr9 111091747 111091880 -12984292 - B1_Mur4 SINE Alu 0 150 1 1 1432 255 175 163 70 chr9 111092061 111092147 -12984025 - PB1D10 SINE Alu -1 116 23 1 1432 327 226 95 0 chr9 111092197 111092281 -12983891 - MER33 DNA MER1_type -188 136 45 1 1432 251 167 33 0 chr9 111093379 111093439 -12982733 + (CTCA)n Simple_repeat Simple_repeat 1 62 0 1 1432 1012 82 185 19 chr9 111093894 111094056 -12982116 - B2_Mm2 SINE B2 -6 189 1 1 1432 36 70 0 0 chr9 111095236 111095307 -12980865 + AT_rich Low_complexity Low_complexity 1 71 0 1 1432 370 207 31 5 chr9 111095837 111095932 -12980240 - PB1D10 SINE Alu 0 149 43 1 1432 641 220 38 0 chr9 111096231 111096363 -12979809 + RSINE1 SINE B4 2 138 -27 1 1432 922 176 122 27 chr9 111096357 111096620 -12979552 + RLTR31_Mm LTR ERVK 274 561 0 1 1432 2354 137 70 116 chr9 111097055 111097643 -12978529 - RLTR31_Mm LTR ERVK 0 561 1 1 1432 1339 179 87 28 chr9 111097643 111097957 -12978215 - MT2A LTR ERVL -138 463 3 1 1432 385 233 22 55 chr9 111097997 111098088 -12978084 + ID_B1 SINE B4 99 186 -38 1 1432 214 143 23 23 chr9 111098096 111098139 -12978033 + GA-rich Low_complexity Low_complexity 3 45 0 1 1432 321 292 104 0 chr9 111098149 111098255 -12977917 + PB1 SINE Alu 3 119 -8 1 1432 189 0 0 0 chr9 111098256 111098277 -12977895 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1432 409 250 59 10 chr9 111099031 111099132 -12977040 - MER5A DNA MER1_type -21 168 63 1 1432 242 364 41 25 chr9 111099035 111099156 -12977016 + MER5A DNA MER1_type 37 159 -30 1 1432 861 236 67 0 chr9 111099221 111099399 -12976773 - B3A SINE B2 -8 190 1 1 1432 250 234 117 0 chr9 111099728 111099822 -12976350 - L1M4 LINE L1 -583 5595 5491 1 1432 613 271 154 7 chr9 111100137 111100430 -12975742 - L1M4 LINE L1 -980 5166 4831 1 1432 950 271 182 31 chr9 111100446 111100930 -12975242 - RMER4B LTR ERVK -12 573 17 1 1432 2695 131 234 2 chr9 111100947 111101421 -12974751 - RMER4B LTR ERVK 0 585 2 1 1432 25 0 0 0 chr9 111101466 111101491 -12974681 + AT_rich Low_complexity Low_complexity 1 25 0 1 1432 656 67 0 22 chr9 111102477 111102568 -12973604 - BC1_Mm scRNA scRNA -63 89 1 1 1432 1234 95 0 0 chr9 111102656 111102804 -12973368 - B1_Mus1 SINE Alu 0 148 1 1 1432 875 259 29 29 chr9 111103383 111103590 -12972582 + B3 SINE B2 9 215 -1 1 1432 340 322 77 19 chr9 111103896 111104051 -12972121 + B4 SINE B4 129 292 0 1 1432 409 252 92 18 chr9 111104170 111104279 -12971893 + PB1D10 SINE Alu 1 117 0 1 1432 498 291 8 30 chr9 111104286 111104417 -12971755 + B1_Mur1 SINE Alu 6 133 -16 1 1432 328 332 59 88 chr9 111104473 111104780 -12971392 - L1MC5 LINE L1 -396 7565 7268 1 1432 534 234 9 0 chr9 111104817 111104924 -12971248 + B3 SINE B2 99 206 -10 1 1432 957 296 62 22 chr9 111104960 111105457 -12970715 - L1MB8 LINE L1 -53 6125 5609 1 1432 250 200 16 32 chr9 111105595 111105657 -12970515 - L1MB8 LINE L1 -742 5432 5372 1 1432 1303 34 7 0 chr9 111105909 111106055 -12970117 + B1_Mus2 SINE Alu 1 147 0 1 1432 200 211 0 0 chr9 111106055 111106093 -12970079 + A-rich Low_complexity Low_complexity 6 43 0 1 1432 338 176 40 26 chr9 111106683 111106759 -12969413 - L1MB4 LINE L1 0 6180 6104 1 1432 979 223 18 54 chr9 111107145 111107368 -12968804 - B3 SINE B2 0 216 2 1 1432 1149 182 51 9 chr9 111108445 111108661 -12967511 - URR1B DNA MER1_type 0 225 1 2 1432 1245 50 0 0 chr9 111108708 111108848 -12967324 + B1_Mus2 SINE Alu 1 140 -7 2 1432 230 120 2 171 chr9 111110053 111110121 -12966051 - ID4 SINE ID -2 81 23 2 1432 203 264 42 76 chr9 111111174 111111293 -12964879 + (GGGTG)n Simple_repeat Simple_repeat 4 118 0 2 1432 304 281 34 73 chr9 111111442 111111619 -12964553 + (GGGTG)n Simple_repeat Simple_repeat 1 170 0 2 1432 274 276 30 68 chr9 111111668 111111800 -12964372 + (GGGTG)n Simple_repeat Simple_repeat 4 130 0 2 1432 603 229 20 20 chr9 111112164 111112311 -12963861 + B1_Mur1 SINE Alu 3 149 0 2 1432 300 191 52 87 chr9 111112438 111112553 -12963619 + RSINE1 SINE B4 15 125 -40 2 1432 338 0 24 0 chr9 111112572 111112614 -12963558 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1432 509 235 136 34 chr9 111112633 111112974 -12963198 - L1MD1 LINE L1 -5 6237 5842 2 1432 866 44 0 17 chr9 111113280 111113396 -12962776 + (TCTCCC)n Simple_repeat Simple_repeat 5 118 0 2 1432 286 251 228 16 chr9 111113489 111113803 -12962369 - L1M3 LINE L1 -429 5862 5480 2 1432 224 233 96 0 chr9 111115339 111115412 -12960760 + B1F SINE Alu 70 149 0 2 1432 266 242 0 0 chr9 111115351 111115413 -12960759 + ID_B1 SINE B4 163 224 0 2 1432 276 284 120 7 chr9 111117343 111117485 -12958687 + RMER30 DNA MER1_type 2 159 -43 2 1432 240 111 0 0 chr9 111118184 111118220 -12957952 + (CAG)n Simple_repeat Simple_repeat 3 38 0 2 1432 722 174 84 28 chr9 111118761 111118903 -12957269 + B1_Mur4 SINE Alu 1 150 0 2 1432 371 328 30 23 chr9 111119697 111119828 -12956344 + RSINE1 SINE B4 4 135 -30 2 1432 410 303 199 23 chr9 111120223 111120706 -12955466 - L2 LINE L2 -2122 1297 730 2 1432 816 229 45 6 chr9 111121694 111121870 -12954302 + B4A SINE B4 110 292 0 2 1432 522 248 21 21 chr9 111121905 111122049 -12954123 + B1F1 SINE Alu 3 146 -3 2 1432 233 282 51 13 chr9 111122049 111122128 -12954044 + ID4_ SINE ID 2 83 0 2 1432 722 222 15 0 chr9 111122693 111122828 -12953344 - B1_Mm SINE Alu -9 138 2 2 1432 487 206 0 0 chr9 111122874 111122966 -12953206 - B3 SINE B2 -86 130 39 2 1432 377 211 48 16 chr9 111123804 111123913 -12952259 - PB1D10 SINE Alu -1 116 11 2 1432 1143 130 129 5 chr9 111124281 111124482 -12951690 - URR1A DNA MER1_type 0 226 1 2 1432 312 303 69 20 chr9 111124954 111125055 -12951117 + RSINE1 SINE B4 3 108 -57 2 1432 1875 155 107 3 chr9 111125070 111125445 -12950727 - MTC LTR MaLR 0 421 8 2 1432 700 238 0 20 chr9 111125960 111126110 -12950062 + B1_Mur1 SINE Alu 2 148 -1 2 1432 342 278 28 9 chr9 111127477 111127586 -12948586 - PB1D10 SINE Alu -6 111 1 2 1432 319 290 46 18 chr9 111129045 111129154 -12947018 - MTEa LTR MaLR -12 367 256 2 1432 1053 262 246 21 chr9 111129145 111129762 -12946410 - MTE-int LTR MaLR -803 777 22 2 1432 402 314 109 16 chr9 111129795 111130013 -12946159 - MT2A LTR ERVL -4 550 280 2 1432 381 236 53 38 chr9 111130086 111130218 -12945954 - MTEa LTR MaLR -227 152 19 2 1432 624 225 26 0 chr9 111130240 111130380 -12945792 - B1_Mur1 SINE Alu -2 147 2 2 1432 330 267 122 0 chr9 111132107 111132197 -12943975 + PB1D10 SINE Alu 1 101 -16 2 1432 207 182 0 0 chr9 111132686 111132719 -12943453 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1432 316 297 151 19 chr9 111133682 111133953 -12942219 + L1MD LINE L1 2545 2851 -3295 2 1432 407 219 0 168 chr9 111133986 111134123 -12942049 + B4 SINE B4 163 276 -16 2 1432 697 285 149 26 chr9 111134182 111134887 -12941285 + L1M5 LINE L1 3433 4238 -1908 2 1432 247 246 0 0 chr9 111135035 111135092 -12941080 + L1M5 LINE L1 4559 4615 -1531 2 1432 1400 53 58 0 chr9 111135487 111135658 -12940514 + B2_Mm2 SINE B2 1 181 -14 2 1432 357 91 330 9 chr9 111135696 111135805 -12940367 + B2_Mm2 SINE B2 48 191 -4 2 1432 315 227 58 67 chr9 111136369 111136460 -12939712 - PB1D10 SINE Alu -12 105 13 2 1432 2545 68 9 0 chr9 111136460 111136784 -12939388 + ORR1A2 LTR MaLR 1 327 0 2 1432 315 227 58 67 chr9 111136784 111136796 -12939376 - PB1D10 SINE Alu -105 12 3 2 1432 371 299 0 134 chr9 111137344 111137545 -12938627 + MTEa LTR MaLR 204 377 -2 2 1432 227 128 0 0 chr9 111138665 111138704 -12937468 - U5 snRNA snRNA -73 43 5 2 1432 1714 213 82 5 chr9 111138704 111139081 -12937091 + Lx5 LINE L1 6643 7048 -2 2 1432 201 158 26 0 chr9 111139396 111139434 -12936738 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1432 1339 89 21 10 chr9 111139875 111140068 -12936104 + B2_Mm2 SINE B2 1 195 0 2 1432 250 191 214 18 chr9 111141114 111141226 -12934946 + ID_B1 SINE B4 87 220 -4 2 1432 529 299 44 0 chr9 111141304 111141441 -12934731 - RSINE1 SINE B4 -1 164 22 2 1432 662 163 52 11 chr9 111142571 111142717 -12933455 + ORR1C2 LTR MaLR 251 396 0 2 1432 197 217 43 0 chr9 111142718 111142764 -12933408 - L2c LINE L2 -234 3153 3106 2 1432 407 253 90 1 chr9 111144316 111144467 -12931705 - L1MB4 LINE L1 0 6180 6019 2 1432 352 266 69 79 chr9 111144580 111144870 -12931302 + L1MC4 LINE L1 6691 6977 -1065 2 1432 6346 73 34 2 chr9 111144950 111145777 -12930395 + Lx LINE L1 5802 6654 0 2 1432 209 125 0 24 chr9 111145777 111145818 -12930354 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 2 1432 3644 168 62 34 chr9 111146046 111146978 -12929194 + RLTR25B LTR ERVK 11 1028 0 2 1432 824 182 131 23 chr9 111147157 111147371 -12928801 - 7SK RNA RNA -94 237 1 2 1432 251 262 43 78 chr9 111147730 111147846 -12928326 + L1MB2 LINE L1 6053 6164 -7 2 1432 426 322 34 34 chr9 111148171 111148319 -12927853 + RSINE1 SINE B4 2 149 -16 2 1432 288 271 0 0 chr9 111148453 111148623 -12927549 + GA-rich Low_complexity Low_complexity 2 171 0 2 1432 374 208 60 40 chr9 111148626 111148726 -12927446 + ID_B1 SINE B4 121 222 -2 2 1432 332 291 151 34 chr9 111148727 111148965 -12927207 + L1MC4 LINE L1 7584 7849 -193 2 22 773 118 5 96 chr9 111149007 111149194 -12926978 + L1_Mus2 LINE L1 6397 6566 0 2 1433 226 250 41 14 chr9 111149367 111149440 -12926732 + B4A SINE B4 24 98 -194 2 1433 183 129 0 0 chr9 111150179 111150210 -12925962 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1433 238 225 109 62 chr9 111150315 111150443 -12925729 + LTR41 LTR ERVL 34 167 -591 2 1433 256 288 181 48 chr9 111150526 111150774 -12925398 + LTR41 LTR ERVL 488 768 0 2 1433 226 314 162 29 chr9 111151340 111151445 -12924727 + RSINE1 SINE B4 22 140 -25 2 1433 1143 27 0 104 chr9 111152898 111153062 -12923110 + B1_Mus2 SINE Alu 1 147 0 2 1433 350 233 136 0 chr9 111153116 111153219 -12922953 - RSINE1 SINE B4 -47 118 2 2 1433 243 105 333 0 chr9 111153360 111153417 -12922755 + B1_Mur4 SINE Alu 68 143 -7 2 1433 185 0 0 39 chr9 111153418 111153444 -12922728 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 2 1433 745 192 42 28 chr9 111153468 111153647 -12922525 + B3A SINE B2 1 176 -19 2 1433 744 250 57 4 chr9 111153853 111154082 -12922090 + L1_Rod LINE L1 5604 5844 -3 2 1433 702 208 45 0 chr9 111154127 111154281 -12921891 + B3 SINE B2 50 210 -6 2 1433 1792 145 0 56 chr9 111154747 111155084 -12921088 + ORR1A3 LTR MaLR 1 318 -8 2 1433 1107 172 19 14 chr9 111158338 111158550 -12917622 + B3 SINE B2 1 213 -3 2 1433 308 325 43 18 chr9 111160628 111160791 -12915381 - MIRc SINE MIR -86 182 16 2 1433 1273 27 0 0 chr9 111161249 111161396 -12914776 + B1_Mus1 SINE Alu 2 148 0 2 1433 266 214 148 46 chr9 111162000 111162108 -12914064 + PB1D9 SINE Alu 1 119 -1 2 1433 2026 122 196 3 chr9 111162396 111162749 -12913423 - MTC LTR MaLR 0 421 1 2 1433 180 0 0 0 chr9 111162843 111162863 -12913309 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1433 317 132 38 0 chr9 111163517 111163570 -12912602 + B3 SINE B2 1 55 -161 2 1433 715 223 0 46 chr9 111163637 111163811 -12912361 + B3 SINE B2 43 208 -8 2 1433 25 31 0 0 chr9 111164756 111164788 -12911384 + AT_rich Low_complexity Low_complexity 1 32 0 2 1433 296 250 75 0 chr9 111164856 111164936 -12911236 + PB1 SINE Alu 35 120 -7 2 1433 499 237 85 0 chr9 111165026 111165144 -12911028 - B1F2 SINE Alu -21 128 1 2 1433 407 302 48 0 chr9 111165176 111165302 -12910870 + B1_Mur1 SINE Alu 5 136 -13 2 1433 847 184 65 35 chr9 111166335 111166559 -12909613 - ORR1C2 LTR MaLR -7 377 131 2 1433 317 216 0 39 chr9 111166747 111166772 -12909400 - ORR1C2 LTR MaLR -78 306 284 2 1433 2037 99 40 49 chr9 111166772 111167100 -12909072 - ORR1A3 LTR MaLR -1 325 1 2 1433 347 216 0 39 chr9 111167100 111167151 -12909021 - ORR1C2 LTR MaLR -101 283 233 2 1433 222 266 132 31 chr9 111167589 111167748 -12908424 + L2a LINE L2 2108 2282 -1137 2 1433 319 310 70 0 chr9 111167777 111167877 -12908295 - PB1D10 SINE Alu -6 111 5 2 1433 333 298 53 11 chr9 111167791 111167886 -12908286 - ID_B1 SINE B4 -48 176 78 2 1433 1243 87 0 11 chr9 111167889 111167903 -12908269 - B2_Mm2 SINE B2 -23 172 159 2 1433 207 0 0 0 chr9 111167903 111167926 -12908246 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 1433 1243 87 0 11 chr9 111167926 111168085 -12908087 - B2_Mm2 SINE B2 -37 158 1 2 1433 349 306 176 0 chr9 111168208 111168316 -12907856 + ID_B1 SINE B4 90 216 -8 2 1433 305 310 8 121 chr9 111168316 111168327 -12907845 + B1F2 SINE Alu 34 112 -37 2 1433 262 225 400 8 chr9 111168327 111168457 -12907715 + B3A SINE B2 2 182 -16 2 1433 422 119 0 12 chr9 111168459 111168544 -12907628 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 1433 1099 255 40 49 chr9 111168576 111169005 -12907167 - L1MB3 LINE L1 -32 6151 5727 2 1433 622 323 39 0 chr9 111169063 111169292 -12906880 - L1MB3 LINE L1 -575 5596 5359 2 1433 382 188 10 10 chr9 111169342 111169444 -12906728 + CT-rich Low_complexity Low_complexity 1 102 0 2 1433 521 337 174 38 chr9 111169469 111169782 -12906390 + L2a LINE L2 2424 2788 -631 2 1433 627 230 55 60 chr9 111169782 111169981 -12906191 - B3A SINE B2 0 198 1 2 1433 521 364 105 55 chr9 111169981 111170581 -12905591 + L2a LINE L2 2789 3404 -22 2 1433 903 183 124 0 chr9 111172124 111172310 -12903862 + B3 SINE B2 5 213 -3 3 1433 619 233 83 0 chr9 111172334 111172467 -12903705 + RSINE1 SINE B4 3 146 -19 3 1433 215 263 123 86 chr9 111172467 111172521 -12903651 + B2_Mm2 SINE B2 1 194 -1 3 1433 1008 191 58 0 chr9 111172972 111173161 -12903011 - URR1B DNA MER1_type 0 225 26 3 1433 1254 96 139 20 chr9 111178329 111178531 -12897641 - URR1A DNA MER1_type 0 226 1 3 1433 202 62 0 59 chr9 111178890 111178924 -12897248 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1433 271 265 80 43 chr9 111178946 111179084 -12897088 + L2c LINE L2 2270 2412 -1007 3 1433 232 311 255 39 chr9 111179196 111179427 -12896745 + L2c LINE L2 3094 3374 -13 3 1433 387 324 69 17 chr9 111180796 111180969 -12895203 + MER58A DNA MER1_type 4 185 -39 3 1433 800 284 153 5 chr9 111181224 111181655 -12894517 - L1ME3 LINE L1 -31 6131 5637 3 1433 331 333 50 21 chr9 111181662 111181803 -12894369 + L2 LINE L2 2744 2888 -531 3 1433 480 295 128 0 chr9 111182416 111182565 -12893607 + B3A SINE B2 5 172 -26 3 1433 1182 49 7 0 chr9 111182722 111182864 -12893308 - B1_Mus1 SINE Alu -4 144 2 3 1433 3754 53 10 12 chr9 111182873 111183354 -12892818 - L1Md_F2 LINE L1 0 6582 6103 3 1433 3858 48 0 2 chr9 111183354 111183963 -12892209 + L1Md_F2 LINE L1 5439 6046 -536 3 1433 1308 198 54 30 chr9 111184121 111184455 -12891717 - RLTR15 LTR ERVK -17 342 1 3 1433 364 232 23 58 chr9 111184559 111184646 -12891526 + B4A SINE B4 24 107 -185 3 1433 298 276 0 0 chr9 111185288 111185346 -12890826 + RSINE1 SINE B4 41 98 -67 3 1433 186 43 0 0 chr9 111185433 111185456 -12890716 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1433 251 188 0 40 chr9 111185465 111185515 -12890657 + B1_Mus1 SINE Alu 13 60 -88 3 1433 484 202 0 23 chr9 111185521 111185698 -12890474 + GA-rich Low_complexity Low_complexity 3 175 0 3 1433 398 156 61 20 chr9 111185737 111185835 -12890337 + B1_Mus2 SINE Alu 42 143 -4 3 1433 189 0 0 0 chr9 111185835 111185856 -12890316 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 3 1433 494 70 0 14 chr9 111185868 111185940 -12890232 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 3 1433 561 15 0 0 chr9 111185940 111186006 -12890166 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1433 2001 112 199 6 chr9 111186095 111186446 -12889726 + MTC LTR MaLR 1 419 -2 3 1433 229 328 16 0 chr9 111186561 111186625 -12889547 + B4A SINE B4 228 292 0 3 1433 833 131 66 0 chr9 111186727 111186864 -12889308 + B1_Mur4 SINE Alu 3 148 -2 3 1433 402 286 117 99 chr9 111187148 111187319 -12888853 + B3 SINE B2 1 174 -42 3 1433 306 0 0 0 chr9 111187322 111187356 -12888816 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1433 1959 226 30 56 chr9 111187376 111187878 -12888294 - RLTR11A2 LTR ERVK -32 495 7 3 1433 477 0 0 0 chr9 111187879 111187932 -12888240 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1433 459 0 0 0 chr9 111187932 111187982 -12888190 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1433 307 312 132 56 chr9 111188664 111188732 -12887440 - B3 SINE B2 -2 214 3 3 1433 647 209 31 0 chr9 111188732 111188861 -12887311 - RSINE1 SINE B4 -29 136 4 3 1433 410 214 0 93 chr9 111189085 111189193 -12886979 - B3 SINE B2 -4 212 115 3 1433 3843 128 64 80 chr9 111189193 111189271 -12886901 + RMER6A LTR ERVK 1 78 -678 3 1433 3867 87 68 2 chr9 111189271 111189803 -12886369 + RMER2 LTR ERV1 1 567 0 3 1433 3843 128 64 80 chr9 111189803 111190041 -12886131 + RMER6A LTR ERVK 79 322 -434 3 1433 627 14 0 0 chr9 111190041 111190113 -12886059 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 1433 3843 128 64 80 chr9 111190113 111190560 -12885612 + RMER6A LTR ERVK 323 752 -4 3 1433 728 147 0 25 chr9 111190563 111190682 -12885490 - B3 SINE B2 -96 120 5 3 1433 338 231 0 0 chr9 111191199 111191264 -12884908 - PB1D9 SINE Alu -54 66 2 3 1433 238 314 0 54 chr9 111191201 111191275 -12884897 - B4A SINE B4 -143 149 80 3 1433 252 0 0 0 chr9 111191277 111191305 -12884867 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 1433 605 275 0 36 chr9 111191305 111191471 -12884701 - RSINE1 SINE B4 -3 162 3 3 1433 1675 123 290 18 chr9 111192031 111192362 -12883810 + MTC LTR MaLR 1 421 0 3 1433 360 0 0 0 chr9 111192965 111193005 -12883167 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1433 904 231 15 5 chr9 111193329 111193533 -12882639 + B3 SINE B2 1 206 -10 3 1433 3320 55 5 0 chr9 111193762 111194160 -12882012 - MTB LTR MaLR 0 400 1 3 1433 360 0 0 0 chr9 111194220 111194260 -12881912 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 3 1433 713 200 0 15 chr9 111194553 111194685 -12881487 - MTC LTR MaLR -289 132 3 3 1433 736 268 35 86 chr9 111194685 111194892 -12881280 + B4A SINE B4 48 253 -39 3 1433 1104 113 0 0 chr9 111194892 111195042 -12881130 + B1_Mur4 SINE Alu 1 150 0 3 1433 736 268 35 86 chr9 111195042 111195087 -12881085 + B4A SINE B4 254 287 -5 3 1433 306 0 0 0 chr9 111195101 111195135 -12881037 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1433 375 376 89 91 chr9 111195313 111195636 -12880536 - MER115 DNA Tip100 -219 474 160 3 1433 1166 168 113 0 chr9 111195636 111195839 -12880333 - URR1A DNA MER1_type 0 226 1 3 1433 375 376 89 91 chr9 111195839 111195954 -12880218 - MER115 DNA Tip100 -534 159 37 3 1433 575 328 3 101 chr9 111196011 111196299 -12879873 - MLT1B LTR MaLR -4 386 127 3 1433 432 215 0 0 chr9 111196364 111196471 -12879701 + (TA)n Simple_repeat Simple_repeat 2 108 0 3 1433 581 280 12 19 chr9 111196488 111196648 -12879524 + RSINE1 SINE B4 2 160 -5 3 1433 195 139 0 0 chr9 111196871 111196907 -12879265 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1433 827 170 0 49 chr9 111196929 111197071 -12879101 + B1_Mur2 SINE Alu 2 136 -13 3 1433 249 98 0 0 chr9 111197072 111197113 -12879059 + (CCAA)n Simple_repeat Simple_repeat 2 42 0 3 1433 3692 192 60 120 chr9 111197115 111198335 -12877837 + Lx4B LINE L1 5912 7058 0 3 1433 279 0 0 0 chr9 111198366 111198397 -12877775 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1433 682 192 0 8 chr9 111198594 111198715 -12877457 + PB1D9 SINE Alu 1 120 0 3 1433 22 0 0 0 chr9 111198863 111198885 -12877287 + AT_rich Low_complexity Low_complexity 1 22 0 3 1433 302 178 91 52 chr9 111199009 111199086 -12877086 - MLT1B LTR MaLR -380 87 8 3 1433 458 286 12 83 chr9 111199535 111199703 -12876469 + B3A SINE B2 2 157 -38 3 1433 25 31 0 0 chr9 111199732 111199764 -12876408 + AT_rich Low_complexity Low_complexity 1 32 0 3 1433 908 122 29 7 chr9 111199773 111199913 -12876259 - B1_Mus1 SINE Alu -1 147 5 3 1433 1002 203 40 0 chr9 111199947 111200149 -12876023 + B3 SINE B2 3 212 -4 3 1433 810 187 7 0 chr9 111200266 111200405 -12875767 - B1_Mur1 SINE Alu 0 149 10 3 1433 354 289 0 104 chr9 111200309 111200444 -12875728 - MT2B LTR ERVL -342 259 139 3 1433 293 119 0 33 chr9 111201098 111201159 -12875013 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 3 1433 784 128 98 0 chr9 111201416 111201549 -12874623 + B1_Mur3 SINE Alu 2 147 -2 3 1433 468 0 0 0 chr9 111201603 111201655 -12874517 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1433 695 138 16 0 chr9 111202106 111202229 -12873943 + CT-rich Low_complexity Low_complexity 3 127 0 3 1433 342 0 0 0 chr9 111202266 111202304 -12873868 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1433 453 19 0 0 chr9 111202304 111202358 -12873814 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1433 237 368 0 0 chr9 111202513 111202581 -12873591 + PB1D10 SINE Alu 15 82 -35 3 1433 848 307 67 4 chr9 111203337 111203592 -12872580 + B4A SINE B4 2 272 -20 3 1433 468 0 0 0 chr9 111203612 111203664 -12872508 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1433 252 0 0 0 chr9 111203664 111203691 -12872481 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1433 707 285 0 41 chr9 111204323 111204517 -12871655 - MER20 DNA MER1_type 0 219 34 3 1433 250 303 56 62 chr9 111204758 111204920 -12871252 + ORR1E LTR MaLR 88 248 -111 3 1433 835 201 144 16 chr9 111205459 111205646 -12870526 + B3 SINE B2 1 211 -5 3 1433 461 138 11 0 chr9 111205968 111206062 -12870110 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 1433 933 289 86 4 chr9 111206066 111206333 -12869839 - B4A SINE B4 -3 289 1 3 1433 230 292 26 70 chr9 111206515 111206629 -12869543 + Tigger12 DNA MER2_type 1161 1269 -690 3 1433 263 309 54 67 chr9 111206870 111207019 -12869153 + RMER12 LTR ERVK 699 845 -477 3 1433 783 267 135 15 chr9 111207024 111207283 -12868889 - B4 SINE B4 -2 290 1 3 1433 469 275 160 8 chr9 111207318 111207461 -12868711 - ID_B1 SINE B4 0 224 73 3 1433 261 292 14 0 chr9 111207464 111207536 -12868636 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1433 536 307 51 43 chr9 111207547 111207782 -12868390 - B4A SINE B4 -55 237 1 3 1433 870 313 35 38 chr9 111208061 111208350 -12867822 - B4 SINE B4 0 292 5 3 1433 1741 262 123 30 chr9 111208460 111209023 -12867149 - Tigger7 DNA MER2_type -1875 616 2 3 1433 333 317 95 24 chr9 111209137 111209263 -12866909 - RSINE1 SINE B4 -28 137 3 3 1433 3401 25 2 0 chr9 111209286 111209680 -12866492 - L1Md_F2 LINE L1 -539 6043 5649 3 1433 5094 48 2 16 chr9 111209680 111210312 -12865860 + L1Md_F2 LINE L1 5959 6581 -1 3 1433 426 244 189 53 chr9 111210409 111210578 -12865594 + B3A SINE B2 1 195 -3 3 1433 315 322 83 46 chr9 111210583 111210801 -12865371 - L1MC5 LINE L1 -274 7687 7462 3 1433 562 243 0 0 chr9 111210810 111210917 -12865255 - RSINE1 SINE B4 -57 108 2 3 1433 264 349 94 0 chr9 111210967 111211073 -12865099 - Charlie4 DNA MER1_type -15 1946 1831 3 1433 290 296 57 0 chr9 111211124 111211212 -12864960 - PB1 SINE Alu -2 125 33 3 1433 396 0 0 0 chr9 111211464 111211508 -12864664 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 3 1433 698 301 10 41 chr9 111211547 111211744 -12864428 + B3A SINE B2 1 191 -7 3 1433 224 30 30 0 chr9 111212062 111212095 -12864077 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 4 1433 876 37 0 0 chr9 111212095 111212202 -12863970 - B1_Mus2 SINE Alu -40 107 1 4 1433 468 139 26 122 chr9 111212100 111212215 -12863957 - MT2B LTR ERVL -344 257 154 4 1433 250 214 40 54 chr9 111212340 111212414 -12863758 + MT2B LTR ERVL 172 244 -357 4 1433 406 182 178 22 chr9 111212369 111212416 -12863756 + B1_Mur2 SINE Alu 45 95 -54 4 1433 441 0 0 0 chr9 111212416 111212465 -12863707 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1433 406 182 178 22 chr9 111212465 111212507 -12863665 + B1_Mur2 SINE Alu 96 148 -1 4 1433 303 307 206 25 chr9 111212581 111212975 -12863197 + HAL1 LINE L1 1205 1669 -838 4 1433 198 91 0 0 chr9 111213378 111213411 -12862761 + (TGG)n Simple_repeat Simple_repeat 3 35 0 4 1433 22 56 0 0 chr9 111214399 111214435 -12861737 + GC_rich Low_complexity Low_complexity 1 36 0 4 1433 21 82 0 0 chr9 111214442 111214491 -12861681 + GC_rich Low_complexity Low_complexity 1 49 0 4 1433 351 0 0 0 chr9 111216113 111216152 -12860020 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1433 432 0 0 0 chr9 111216152 111216199 -12859973 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1433 888 306 66 30 chr9 111216208 111216776 -12859396 - L1MA8 LINE L1 -352 6641 6046 4 1433 429 296 15 0 chr9 111216850 111216985 -12859187 + B3 SINE B2 32 168 -48 4 1433 2962 272 97 74 chr9 111217061 111217908 -12858264 - L1MA8 LINE L1 -1112 5733 4848 4 1433 345 24 0 0 chr9 111217908 111217950 -12858222 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1433 2962 272 97 74 chr9 111217950 111218209 -12857963 - L1MA8 LINE L1 -1998 4847 4552 4 1433 1395 71 38 11 chr9 111218209 111218395 -12857777 - B2_Mm2 SINE B2 -4 191 1 4 1433 2962 272 97 74 chr9 111218395 111218472 -12857700 - L1MA8 LINE L1 -2294 4551 4486 4 1433 657 0 0 0 chr9 111218472 111218545 -12857627 + (TTC)n Simple_repeat Simple_repeat 2 74 0 4 1433 1151 68 0 26 chr9 111218549 111218701 -12857471 - B1_Mus1 SINE Alu 0 148 1 4 1433 2962 272 97 74 chr9 111218701 111218924 -12857248 - L1MA8 LINE L1 -2360 4485 4266 4 1433 896 168 0 0 chr9 111218924 111219067 -12857105 - B1_Mur4 SINE Alu -5 145 3 4 1433 2962 272 97 74 chr9 111219067 111219393 -12856779 - L1MA8 LINE L1 -2580 4265 3955 4 1433 411 295 50 10 chr9 111219397 111219599 -12856573 - L1_Mur3 LINE L1 -3403 2477 2268 4 1433 247 202 43 43 chr9 111219645 111219738 -12856434 - L1MA8 LINE L1 -4797 2052 1960 4 1433 1136 172 64 0 chr9 111219788 111219991 -12856181 - B3 SINE B2 0 216 1 4 1433 243 0 0 0 chr9 111220475 111220502 -12855670 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1433 492 99 0 0 chr9 111221332 111221403 -12854769 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 1433 719 185 7 29 chr9 111222047 111222186 -12853986 - RSINE1 SINE B4 -28 137 2 4 1433 254 286 0 100 chr9 111222206 111222276 -12853896 - MER87 LTR ERV1 -81 460 398 4 1433 705 265 6 11 chr9 111223873 111224056 -12852116 - B3A SINE B2 -16 182 1 4 1433 360 0 0 0 chr9 111224085 111224125 -12852047 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1433 638 25 0 12 chr9 111224670 111224751 -12851421 + (TCCC)n Simple_repeat Simple_repeat 2 81 0 4 1433 698 284 113 23 chr9 111224837 111225093 -12851079 - B4A SINE B4 0 292 14 4 1433 303 240 74 74 chr9 111225178 111225313 -12850859 - L1MC4a LINE L1 -1963 5919 5785 4 1433 1182 226 38 44 chr9 111225315 111225658 -12850514 + MTE2a LTR MaLR 1 341 -38 4 1433 871 191 79 11 chr9 111226057 111226247 -12849925 - B3 SINE B2 -13 203 1 4 1433 429 287 85 64 chr9 111226269 111226552 -12849620 - MLT1E2 LTR MaLR -338 289 1 4 1433 465 291 67 0 chr9 111226911 111227045 -12849127 + RSINE1 SINE B4 2 144 -21 4 1433 330 26 0 0 chr9 111227722 111227761 -12848411 + (CAAG)n Simple_repeat Simple_repeat 4 42 0 4 1433 272 277 43 26 chr9 111228298 111228413 -12847759 + MER3 DNA MER1_type 3 119 -90 4 1433 884 149 46 110 chr9 111228430 111228649 -12847523 + B3 SINE B2 4 208 -8 4 1433 314 340 49 49 chr9 111228968 111229191 -12846981 + MLT1L LTR MaLR 216 438 -172 4 1433 834 248 105 19 chr9 111229543 111229744 -12846428 + B4 SINE B4 2 214 -78 4 1433 213 39 0 0 chr9 111229744 111229770 -12846402 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 4 1433 834 248 105 19 chr9 111229770 111229835 -12846337 + B4 SINE B4 215 290 -2 4 1433 403 252 148 73 chr9 111230568 111230887 -12845285 + L1M5 LINE L1 5352 5695 -467 4 1433 321 257 57 9 chr9 111231319 111231425 -12844747 + PB1D10 SINE Alu 5 115 -2 4 1433 286 240 26 26 chr9 111231425 111231502 -12844670 + ID4 SINE ID 3 79 -4 4 1433 402 222 24 0 chr9 111231523 111231649 -12844523 + (CA)n Simple_repeat Simple_repeat 2 130 0 4 1433 395 214 54 0 chr9 111231736 111231848 -12844324 - L1MB2 LINE L1 -113 6058 5941 4 1433 236 267 113 15 chr9 111233694 111233827 -12842345 + MIRb SINE MIR 38 183 -85 4 1433 233 286 80 0 chr9 111234658 111234770 -12841402 - Charlie1b DNA MER1_type -43 480 360 4 1433 306 228 150 2 chr9 111235111 111235237 -12840935 - MLT1D LTR MaLR 0 505 320 4 1433 414 0 0 0 chr9 111236757 111236803 -12839369 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1433 542 156 20 40 chr9 111236815 111236915 -12839257 - B1_Mur1 SINE Alu -43 106 9 4 1433 459 0 0 0 chr9 111237821 111237872 -12838300 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1433 307 245 0 75 chr9 111237874 111237980 -12838192 - B1_Mur4 SINE Alu -51 99 2 4 1433 357 278 27 27 chr9 111238195 111238306 -12837866 - MER34A LTR ERV1 -459 112 2 4 1433 215 226 38 0 chr9 111238655 111238708 -12837464 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1433 441 36 0 0 chr9 111238750 111238805 -12837367 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1433 379 278 19 0 chr9 111238825 111238933 -12837239 - RSINE1 SINE B4 -53 112 3 4 1433 302 214 46 55 chr9 111239317 111239426 -12836746 - RMER20B LTR ERVK -248 379 272 4 1433 348 244 190 38 chr9 111239525 111239664 -12836508 + B4 SINE B4 1 167 -125 4 1433 3037 58 2 122 chr9 111239664 111240156 -12836016 + L1Md_F2 LINE L1 6149 6581 -1 4 1433 348 244 190 38 chr9 111240156 111240174 -12835998 + B4 SINE B4 168 182 -110 4 1433 1156 215 31 4 chr9 111240175 111240432 -12835740 + Lx4B LINE L1 6778 7041 -17 4 1433 22 0 0 0 chr9 111240432 111240454 -12835718 + AT_rich Low_complexity Low_complexity 1 22 0 4 1433 1933 53 8 0 chr9 111240494 111240741 -12835431 - L1Md_F2 LINE L1 -1 6581 6333 4 1433 26730 62 6 8 chr9 111240742 111245083 -12831089 - L1Md_F LINE L1 -1166 4717 387 4 1433 22 35 0 0 chr9 111245247 111245276 -12830896 + AT_rich Low_complexity Low_complexity 1 29 0 4 1433 617 69 11 0 chr9 111245286 111245373 -12830799 + B2_Mm2 SINE B2 2 89 -106 4 1433 312 83 0 0 chr9 111245385 111245433 -12830739 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1433 568 233 29 58 chr9 111246959 111247132 -12829040 - B3A SINE B2 -26 172 5 4 1433 203 125 25 0 chr9 111247283 111247323 -12828849 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 4 1433 666 134 244 0 chr9 111248151 111248270 -12827902 + B1_Mus1 SINE Alu 1 148 0 4 1433 315 0 0 0 chr9 111248295 111248330 -12827842 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 1433 325 302 23 8 chr9 111248342 111248472 -12827700 + (TATATG)n Simple_repeat Simple_repeat 2 133 0 4 1433 651 122 56 16 chr9 111248487 111248612 -12827560 - Lx LINE L1 -1 6653 6524 4 1433 1171 260 14 7 chr9 111248629 111248912 -12827260 - B4A SINE B4 -4 288 4 4 1433 1036 195 19 33 chr9 111249153 111249365 -12826807 - B3 SINE B2 -4 212 4 4 1433 293 352 56 0 chr9 111250925 111251033 -12825139 - B1F1 SINE Alu -34 115 2 4 1433 365 214 148 27 chr9 111251484 111251633 -12824539 + LTR16A1 LTR ERVL 288 454 -2 4 1433 270 0 0 0 chr9 111252171 111252201 -12823971 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 1433 416 217 47 9 chr9 111252488 111252595 -12823577 + PB1D9 SINE Alu 7 117 -3 4 1433 21 0 0 0 chr9 111252755 111252776 -12823396 + AT_rich Low_complexity Low_complexity 1 21 0 4 1433 298 220 20 0 chr9 111252799 111252899 -12823273 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1433 455 250 98 16 chr9 111252916 111253038 -12823134 - RSINE1 SINE B4 -31 134 3 4 1433 933 279 158 65 chr9 111253139 111253710 -12822462 - MLT1E3 LTR MaLR 0 624 1 4 1433 396 0 0 0 chr9 111253747 111253791 -12822381 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 1433 225 0 0 0 chr9 111254156 111254181 -12821991 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1433 1100 194 10 0 chr9 111256196 111256402 -12819770 - B3 SINE B2 -5 211 4 4 1433 838 256 9 14 chr9 111256758 111256972 -12819200 - B3 SINE B2 0 216 4 4 1433 331 253 25 0 chr9 111257508 111257587 -12818585 - ID2 SINE ID -1 82 2 4 1433 25 65 0 0 chr9 111259582 111259628 -12816544 + AT_rich Low_complexity Low_complexity 1 46 0 4 1433 551 106 104 19 chr9 111260184 111260290 -12815882 + RMER4A LTR ERVK 279 393 -73 4 1433 610 215 51 75 chr9 111260674 111260822 -12815350 - RMER17C LTR ERVK 0 410 181 4 1433 387 0 0 0 chr9 111260822 111260865 -12815307 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1433 610 126 111 23 chr9 111260865 111261023 -12815149 - RMER17C LTR ERVK -230 180 8 4 1433 2263 78 29 0 chr9 111261024 111261333 -12814839 - RMER17C-int LTR ERVK -3 3235 2918 4 1433 306 0 0 0 chr9 111261333 111261367 -12814805 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1433 347 36 86 35 chr9 111261367 111261425 -12814747 - RMER17C-int LTR ERVK -365 2873 2813 4 1433 2502 130 29 15 chr9 111261711 111262165 -12814007 - RMER4A LTR ERVK -1 465 6 4 1433 623 156 122 8 chr9 111262780 111262903 -12813269 + RMER1A Other Other 34 170 -860 4 1433 354 23 0 0 chr9 111262938 111262981 -12813191 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1433 6267 53 13 3 chr9 111263188 111263968 -12812204 + L1_Mus1 LINE L1 5779 6566 -1 4 1433 629 254 46 0 chr9 111264004 111264134 -12812038 - RSINE1 SINE B4 -28 137 2 4 1433 208 372 109 0 chr9 111265549 111265686 -12810486 + MIR SINE MIR 73 224 -38 4 1433 263 262 126 0 chr9 111266940 111267043 -12809129 - MER20 DNA MER1_type -98 121 6 4 1433 281 196 121 20 chr9 111270587 111270686 -12805486 - Lx9 LINE L1 -20 7624 7516 4 1433 360 0 0 0 chr9 111270687 111270727 -12805445 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1433 507 256 145 0 chr9 111271697 111271869 -12804303 - Lx9 LINE L1 -204 7440 7244 4 1433 796 181 20 27 chr9 111272828 111272976 -12803196 + B1_Mur1 SINE Alu 2 148 -1 5 1433 301 320 50 75 chr9 111272835 111272994 -12803178 + B4A SINE B4 94 248 -44 5 1433 328 296 67 63 chr9 111273404 111273542 -12802630 - L1ME1 LINE L1 -216 5963 5823 5 1433 450 0 0 0 chr9 111273542 111273592 -12802580 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1433 328 296 67 63 chr9 111273592 111273691 -12802481 - L1ME1 LINE L1 -357 5822 5725 5 1433 467 162 0 0 chr9 111274726 111274800 -12801372 + tRNA-Lys-AAG tRNA tRNA 3 76 0 5 1433 288 0 0 0 chr9 111275350 111275382 -12800790 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1433 947 232 85 39 chr9 111279113 111279396 -12796776 + Cheshire DNA MER1_type 4 299 -2121 5 1433 1214 170 92 0 chr9 111279396 111279602 -12796570 - URR1B DNA MER1_type 0 225 1 5 1434 191 194 0 0 chr9 111280213 111280249 -12795923 + L3 LINE CR1 2444 2479 -2010 5 1434 462 318 65 0 chr9 111280851 111281005 -12795167 - B3A SINE B2 -34 164 1 5 1434 485 277 51 13 chr9 111281026 111281183 -12794989 + RSINE1 SINE B4 3 165 0 5 1434 1220 216 64 67 chr9 111282428 111282726 -12793446 - ORR1D1 LTR MaLR -77 297 1 5 1434 183 217 78 62 chr9 111283197 111283261 -12792911 - L2 LINE L2 -1317 2102 2038 5 1434 471 255 146 21 chr9 111284187 111284331 -12791841 + Tigger5 DNA MER2_type 24 185 -2221 5 1434 366 23 0 0 chr9 111284332 111284375 -12791797 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1434 257 312 10 50 chr9 111284398 111284499 -12791673 + Tigger5 DNA MER2_type 2307 2403 -3 5 1434 3167 58 2 2 chr9 111284551 111284945 -12791227 + L1Md_F2 LINE L1 6177 6570 -12 5 1434 485 244 29 25 chr9 111285129 111285288 -12790884 - MLT1B LTR MaLR -37 337 190 5 1434 536 77 13 0 chr9 111285288 111285366 -12790806 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1434 253 313 60 0 chr9 111285432 111285515 -12790657 - MLT1B LTR MaLR -297 93 6 5 1434 227 336 142 8 chr9 111285956 111286076 -12790096 - MLT1L LTR MaLR -121 489 354 5 1434 719 324 94 51 chr9 111286780 111287271 -12788901 - MLT1H LTR MaLR -4 545 34 5 1434 303 332 162 16 chr9 111287766 111288125 -12788047 - L2c LINE L2 -2 3424 2955 5 1434 186 43 0 0 chr9 111289532 111289555 -12786617 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1434 234 269 45 0 chr9 111289617 111289684 -12786488 - Charlie5 DNA MER1_type -2512 112 43 5 1434 1145 52 0 0 chr9 111289709 111289844 -12786328 + B1_Mus1 SINE Alu 5 139 -9 5 1434 459 353 0 23 chr9 111290125 111290296 -12785876 - B4A SINE B4 0 292 126 5 1434 509 269 74 21 chr9 111290728 111290918 -12785254 - MER3 DNA MER1_type -8 201 2 5 1434 377 231 0 25 chr9 111290967 111291047 -12785125 - ID4 SINE ID -4 79 2 5 1434 841 203 95 15 chr9 111291228 111291428 -12784744 - B3 SINE B2 0 216 1 5 1434 327 301 59 22 chr9 111297383 111297519 -12778653 - L1MEe LINE L1 -4008 846 706 5 1434 203 138 0 0 chr9 111297519 111297548 -12778624 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 5 1434 328 294 146 36 chr9 111300684 111300931 -12775241 + MLT1H2 LTR MaLR 213 486 -3 5 1434 346 312 0 31 chr9 111301426 111301522 -12774650 + PB1D9 SINE Alu 2 94 -26 5 1434 351 0 0 0 chr9 111301818 111301857 -12774315 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1434 455 287 156 52 chr9 111301897 111302147 -12774025 - B4 SINE B4 -15 277 2 5 1434 211 357 77 0 chr9 111302306 111302449 -12773723 + MIRb SINE MIR 31 184 -84 5 1434 192 77 0 0 chr9 111303127 111303153 -12773019 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1434 252 122 0 0 chr9 111303175 111303216 -12772956 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1434 1014 247 48 52 chr9 111303218 111303487 -12772685 - B4 SINE B4 -23 269 2 5 1434 515 278 116 31 chr9 111303496 111303704 -12772468 - L1MB2 LINE L1 -3 6168 5947 5 1434 333 0 0 0 chr9 111304098 111304135 -12772037 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 5 1434 281 296 31 0 chr9 111304192 111304290 -12771882 - L1MB2 LINE L1 -285 5886 5786 5 1434 204 40 0 0 chr9 111305360 111305385 -12770787 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 1434 207 69 0 0 chr9 111305385 111305413 -12770759 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1434 589 321 36 0 chr9 111305415 111305580 -12770592 - B3A SINE B2 -27 171 1 5 1434 1088 216 39 0 chr9 111306137 111306345 -12769827 + ID_B1 SINE B4 1 216 -8 5 1434 944 233 5 19 chr9 111306382 111306592 -12769580 - B3 SINE B2 -7 209 3 5 1434 252 0 0 0 chr9 111306740 111306768 -12769404 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 5 1434 180 0 0 0 chr9 111308389 111308409 -12767763 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1434 333 0 0 0 chr9 111308911 111308948 -12767224 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1434 706 264 74 5 chr9 111309210 111309412 -12766760 + B3 SINE B2 1 216 0 5 1434 432 0 0 0 chr9 111309760 111309808 -12766364 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1434 575 270 80 56 chr9 111311257 111311508 -12764664 - L1M2 LINE L1 -473 5818 5562 5 1434 382 278 141 92 chr9 111311881 111312087 -12764085 + B4 SINE B4 1 216 -76 5 1434 186 43 0 0 chr9 111312526 111312549 -12763623 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 5 1434 323 312 103 14 chr9 111312553 111312699 -12763473 + ID_B1 SINE B4 18 176 -48 5 1434 221 324 42 0 chr9 111312637 111312708 -12763464 + PB1D9 SINE Alu 34 107 -13 5 1434 382 203 14 0 chr9 111313065 111313134 -12763038 - HAL1-3A_ME LINE L1 -813 2045 1976 5 1434 3082 174 25 7 chr9 111313224 111313775 -12762397 - Lx5 LINE L1 -5 7045 6485 5 1434 2192 159 29 21 chr9 111313787 111314173 -12761999 + Lx5 LINE L1 6117 6505 -545 5 1434 594 210 147 6 chr9 111314173 111314336 -12761836 - B4A SINE B4 -71 221 36 5 1434 231 292 157 19 chr9 111314248 111314356 -12761816 - B3 SINE B2 -93 123 1 5 1434 398 268 89 0 chr9 111314367 111314490 -12761682 - B1F SINE Alu -10 139 6 5 1434 704 249 51 141 chr9 111314749 111314983 -12761189 - B3A SINE B2 -3 213 1 5 1434 21 0 0 0 chr9 111315402 111315423 -12760749 + AT_rich Low_complexity Low_complexity 1 21 0 5 1434 228 294 235 0 chr9 111316723 111316808 -12759364 + B1F2 SINE Alu 1 105 -44 5 1434 400 294 110 0 chr9 111316805 111316951 -12759221 - MTD LTR MaLR -247 172 11 5 1434 1934 153 67 14 chr9 111317036 111317380 -12758792 - ORR1B2 LTR MaLR 0 367 6 5 1434 487 254 102 34 chr9 111317454 111317601 -12758571 + RSINE1 SINE B4 3 159 -6 5 1434 273 57 0 0 chr9 111317602 111317637 -12758535 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1434 2190 100 51 0 chr9 111317691 111318002 -12758170 - ORR1A2 LTR MaLR 0 327 1 5 1434 582 289 125 30 chr9 111318149 111318413 -12757759 - LTR16A LTR ERVL 0 451 163 5 1434 399 278 0 0 chr9 111318736 111318987 -12757185 + (TG)n Simple_repeat Simple_repeat 1 251 0 5 1434 450 0 0 0 chr9 111319564 111319614 -12756558 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1434 1008 101 0 0 chr9 111319614 111319792 -12756380 + (GA)n Simple_repeat Simple_repeat 1 178 0 5 1434 681 138 31 6 chr9 111319792 111319952 -12756220 + GA-rich Low_complexity Low_complexity 2 165 0 5 1434 306 0 0 0 chr9 111321947 111321981 -12754191 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1434 306 0 0 0 chr9 111321981 111322014 -12754158 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1434 636 220 79 47 chr9 111322175 111322369 -12753803 - B3A SINE B2 -12 204 1 5 1434 1026 100 0 0 chr9 111322722 111322862 -12753310 + B2_Mm2 SINE B2 2 141 -54 5 1434 357 82 0 0 chr9 111323009 111323058 -12753114 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 5 1434 786 254 17 6 chr9 111323067 111323245 -12752927 - B3A SINE B2 -16 182 3 5 1434 181 83 27 27 chr9 111324167 111324204 -12751968 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1434 285 174 0 0 chr9 111324217 111324263 -12751909 + B3A SINE B2 8 53 -145 5 1434 420 143 0 0 chr9 111324269 111324339 -12751833 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1434 531 322 89 5 chr9 111325640 111325843 -12750329 - MER58A DNA MER1_type 0 224 5 5 1434 333 295 139 23 chr9 111326024 111326239 -12749933 - L1ME3A LINE L1 -55 6118 5879 5 1434 1091 250 52 4 chr9 111326461 111326730 -12749442 + B4A SINE B4 1 282 -10 5 1434 2313 120 6 0 chr9 111326742 111327067 -12749105 - ORR1A4 LTR MaLR -2 327 1 5 1434 330 26 0 0 chr9 111327099 111327138 -12749034 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1434 450 0 0 0 chr9 111328035 111328085 -12748087 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1434 1041 253 111 34 chr9 111328336 111328688 -12747484 - MTEb LTR MaLR 0 379 1 5 1434 529 305 40 149 chr9 111328699 111328799 -12747373 + ORR1E LTR MaLR 4 81 -278 5 1434 1022 136 0 7 chr9 111328799 111328947 -12747225 - B1_Mur4 SINE Alu -2 148 2 5 1434 529 305 40 149 chr9 111328947 111329061 -12747111 + ORR1E LTR MaLR 82 184 -175 5 1434 558 0 0 0 chr9 111329061 111329123 -12747049 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1434 529 305 40 149 chr9 111329123 111329304 -12746868 + ORR1E LTR MaLR 185 356 -3 5 1434 289 229 183 14 chr9 111329836 111329907 -12746265 - B1_Mur2 SINE Alu -50 99 17 5 1434 563 315 80 51 chr9 111330014 111330325 -12745847 + MLT1H LTR MaLR 74 393 -156 5 1434 203 170 0 21 chr9 111330406 111330454 -12745718 + (TATG)n Simple_repeat Simple_repeat 4 50 0 5 1434 707 268 139 64 chr9 111330463 111330730 -12745442 - B4A SINE B4 0 292 6 5 1434 225 0 0 0 chr9 111330741 111330766 -12745406 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 5 1434 950 243 9 55 chr9 111330786 111331004 -12745168 - B3 SINE B2 -7 209 2 5 1434 604 246 21 21 chr9 111331008 111331149 -12745023 - ID_B1 SINE B4 -2 222 82 5 1434 228 191 0 60 chr9 111331130 111331180 -12744992 + MLT1H LTR MaLR 497 543 -6 5 1434 327 322 38 52 chr9 111332386 111332599 -12743573 - Charlie25 DNA MER1_type -215 2309 2100 5 1434 327 422 34 19 chr9 111332832 111333100 -12743072 - Charlie25 DNA MER1_type -964 1560 1289 5 1434 338 61 20 0 chr9 111333262 111333311 -12742861 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1434 477 0 0 0 chr9 111333326 111333379 -12742793 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1434 306 0 0 0 chr9 111333759 111333793 -12742379 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1434 22 0 0 0 chr9 111334248 111334270 -12741902 + AT_rich Low_complexity Low_complexity 1 22 0 6 1434 264 170 0 0 chr9 111334286 111334339 -12741833 + (TGG)n Simple_repeat Simple_repeat 1 53 0 6 1434 555 320 43 43 chr9 111334409 111334687 -12741485 - B4 SINE B4 -13 279 2 6 1434 321 202 35 12 chr9 111334694 111334779 -12741393 - PB1D10 SINE Alu -8 109 23 6 1434 24 0 0 0 chr9 111335114 111335138 -12741034 + AT_rich Low_complexity Low_complexity 1 24 0 6 1434 902 274 209 18 chr9 111335180 111335581 -12740591 - RMER5 LTR ERV1 0 534 57 6 1434 462 36 0 0 chr9 111335928 111335984 -12740188 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1434 387 0 0 0 chr9 111335984 111336026 -12740146 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1434 526 332 70 39 chr9 111336032 111336289 -12739883 + B4 SINE B4 28 292 0 6 1434 259 65 43 0 chr9 111336291 111336337 -12739835 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1434 622 136 0 17 chr9 111336343 111336463 -12739709 + GA-rich Low_complexity Low_complexity 2 119 0 6 1434 356 248 329 0 chr9 111337584 111337733 -12738439 - B3A SINE B2 0 198 1 6 1434 198 0 0 0 chr9 111337735 111337757 -12738415 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 6 1434 717 282 17 104 chr9 111338056 111338297 -12737875 + ID_B1 SINE B4 4 223 -1 6 1434 305 0 50 0 chr9 111338328 111338368 -12737804 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 6 1434 285 365 50 45 chr9 111338880 111339101 -12737071 - B4 SINE B4 -70 222 1 6 1434 261 0 0 0 chr9 111339351 111339380 -12736792 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1434 247 353 99 56 chr9 111339956 111340259 -12735913 + ORR1D2 LTR MaLR 2 317 -53 6 1434 604 246 14 84 chr9 111340276 111340489 -12735683 + B3A SINE B2 1 198 0 6 1434 470 357 59 22 chr9 111340615 111340887 -12735285 - MLT1J LTR MaLR -230 282 1 6 1434 212 133 44 0 chr9 111341309 111341354 -12734818 + GA-rich Low_complexity Low_complexity 1 47 0 6 1434 561 24 12 24 chr9 111341361 111341446 -12734726 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1434 299 65 0 21 chr9 111341536 111341583 -12734589 + (CGGGG)n Simple_repeat Simple_repeat 3 48 0 6 1434 25 51 0 0 chr9 111341788 111341827 -12734345 + GC_rich Low_complexity Low_complexity 1 39 0 6 1434 588 29 0 0 chr9 111343514 111343584 -12732588 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 6 1434 1981 182 74 8 chr9 111343620 111344013 -12732159 - MTD LTR MaLR 0 419 1 6 1434 720 228 8 15 chr9 111344036 111344195 -12731977 - ID_B1 SINE B4 -47 245 85 6 1434 296 294 31 70 chr9 111344094 111344222 -12731950 - MT2B LTR ERVL -341 260 138 6 1434 303 271 65 65 chr9 111344439 111344577 -12731595 + RMER12 LTR ERVK 719 856 -466 6 1434 501 253 0 0 chr9 111344601 111344779 -12731393 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 1434 326 256 35 0 chr9 111344818 111344904 -12731268 - HAL1-3A_ME LINE L1 -829 2029 1941 6 1434 284 319 67 8 chr9 111345804 111345924 -12730248 + MIRb SINE MIR 28 154 -114 6 1434 294 321 38 15 chr9 111346061 111346194 -12729978 - MER5A1 DNA MER1_type -30 136 1 6 1434 845 289 66 66 chr9 111346564 111347031 -12729141 + L1MA4 LINE L1 5433 5899 -401 6 1434 258 83 65 32 chr9 111347031 111347093 -12729079 + GA-rich Low_complexity Low_complexity 2 65 0 6 1434 420 314 38 0 chr9 111347099 111347204 -12728968 + RSINE1 SINE B4 3 111 -54 6 1434 1008 211 33 9 chr9 111347310 111347520 -12728652 - B3 SINE B2 -1 215 1 6 1434 1977 73 4 15 chr9 111348241 111348506 -12727666 + Lx LINE L1 6294 6555 -99 6 1434 258 32 0 0 chr9 111348514 111348545 -12727627 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1434 582 251 94 63 chr9 111349012 111349203 -12726969 + B4A SINE B4 8 204 -88 6 1434 762 40 0 0 chr9 111349228 111349329 -12726843 + L1Md_T LINE L1 6482 6582 0 6 1434 345 24 0 0 chr9 111349335 111349377 -12726795 + (TAA)n Simple_repeat Simple_repeat 2 43 0 6 1434 518 196 19 19 chr9 111349985 111350089 -12726083 + B1_Mur2 SINE Alu 37 140 -9 6 1434 584 50 12 0 chr9 111350090 111350170 -12726002 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1434 398 171 240 33 chr9 111351306 111351427 -12724745 + RSINE1 SINE B4 3 148 -17 6 1434 192 97 0 0 chr9 111351434 111351465 -12724707 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1434 22 0 0 0 chr9 111351475 111351497 -12724675 + AT_rich Low_complexity Low_complexity 1 22 0 6 1434 296 315 28 106 chr9 111351746 111351888 -12724284 + B4A SINE B4 160 290 -2 6 1434 281 197 14 14 chr9 111351890 111351962 -12724210 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1434 579 15 0 0 chr9 111352187 111352255 -12723917 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1434 315 368 84 42 chr9 111352414 111352627 -12723545 + LTR16C LTR ERVL 91 312 -177 6 1434 498 231 85 8 chr9 111352963 111353081 -12723091 - ID_B1 SINE B4 -5 219 93 6 1434 1898 269 45 32 chr9 111353505 111354063 -12722109 + RCHARR1 DNA MER1_type 2 566 -408 6 1434 180 0 0 0 chr9 111354063 111354083 -12722089 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1434 1154 22 0 0 chr9 111354083 111354221 -12721951 - B1_Mm SINE Alu 0 147 10 6 1434 555 202 18 9 chr9 111354218 111354328 -12721844 + RCHARR1 DNA MER1_type 566 676 -298 6 1434 180 0 0 0 chr9 111354331 111354351 -12721821 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 6 1434 1077 116 0 13 chr9 111354351 111354500 -12721672 - B1_Mus1 SINE Alu 0 148 2 6 1434 1038 245 28 62 chr9 111354578 111354869 -12721303 + B4A SINE B4 2 282 -10 6 1434 362 115 0 0 chr9 111354943 111354995 -12721177 + HAL1-3A_ME LINE L1 1976 2027 -831 6 1434 239 294 88 48 chr9 111355261 111355386 -12720786 - B1F1 SINE Alu -19 130 1 6 1434 681 254 24 24 chr9 111355386 111355468 -12720704 - B4 SINE B4 -205 87 6 6 1434 794 287 53 18 chr9 111356793 111357004 -12719168 + B4A SINE B4 11 229 -63 6 1434 446 321 29 91 chr9 111357004 111357179 -12718993 + RSINE1 SINE B4 2 165 0 6 1434 288 0 0 0 chr9 111357214 111357246 -12718926 + (CTA)n Simple_repeat Simple_repeat 3 34 0 6 1434 192 125 0 0 chr9 111357288 111357320 -12718852 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1434 434 70 14 0 chr9 111357372 111357443 -12718729 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1434 198 282 83 14 chr9 111357793 111357865 -12718307 - L2a LINE L2 0 3426 3350 6 1434 757 201 0 46 chr9 111358460 111358483 -12717689 + B1_Mur3 SINE Alu 1 23 -126 6 1434 4372 120 75 28 chr9 111358483 111359205 -12716967 - RMER6A LTR ERVK 0 756 1 6 1434 757 201 0 46 chr9 111359205 111359332 -12716840 + B1_Mur3 SINE Alu 24 144 -5 6 1434 208 250 0 0 chr9 111359335 111359375 -12716797 + polypurine Low_complexity Low_complexity 2 41 0 6 1434 62 0 0 0 chr9 111360863 111360925 -12715247 + AT_rich Low_complexity Low_complexity 1 62 0 6 1434 666 150 0 0 chr9 111360925 111361045 -12715127 + (TG)n Simple_repeat Simple_repeat 1 120 0 6 1434 600 247 70 6 chr9 111361045 111361216 -12714956 - B3A SINE B2 -16 182 1 6 1434 315 304 0 94 chr9 111361339 111361466 -12714706 - PB1D7 SINE Alu -5 115 1 6 1434 467 74 0 14 chr9 111361837 111361906 -12714266 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 6 1434 937 51 0 0 chr9 111361906 111362024 -12714148 - B1_Mus2 SINE Alu 0 147 30 6 1434 525 262 29 119 chr9 111362019 111362278 -12713894 - MTEa LTR MaLR -16 363 72 6 1434 762 67 0 0 chr9 111363407 111363512 -12712660 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 6 1434 749 104 0 9 chr9 111363512 111363611 -12712561 - B1_Mus1 SINE Alu -10 138 40 6 1434 1294 32 0 6 chr9 111363612 111363768 -12712404 - B2_Mm2 SINE B2 -39 156 2 6 1434 668 228 65 46 chr9 111363775 111363991 -12712181 - ID_B1 SINE B4 0 224 5 6 1434 289 304 118 33 chr9 111364274 111364427 -12711745 + MER5A1 DNA MER1_type 1 166 0 6 1434 1115 166 6 0 chr9 111364612 111364793 -12711379 + Lx5 LINE L1 6198 6379 -671 6 1434 183 42 0 0 chr9 111365413 111365437 -12710735 + (C)n Simple_repeat Simple_repeat 1 24 0 6 1434 22 35 0 0 chr9 111365594 111365623 -12710549 + AT_rich Low_complexity Low_complexity 1 29 0 6 1434 24 0 0 0 chr9 111365747 111365771 -12710401 + AT_rich Low_complexity Low_complexity 1 24 0 6 1434 1585 216 60 12 chr9 111365827 111366187 -12709985 - MTD LTR MaLR -14 405 41 6 1434 1509 260 39 11 chr9 111366508 111366870 -12709302 + MTEa LTR MaLR 8 379 0 6 1434 702 261 93 0 chr9 111368553 111368714 -12707458 - B3A SINE B2 -22 176 1 6 1434 263 280 69 92 chr9 111368740 111368874 -12707298 - B3 SINE B2 -1 215 80 6 1434 492 18 0 0 chr9 111368874 111368931 -12707241 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1434 263 280 69 92 chr9 111368931 111368969 -12707203 - B3 SINE B2 -137 79 47 6 1434 226 305 56 19 chr9 111369167 111369274 -12706898 + MLT1J-int LTR MaLR 638 748 -639 6 1434 232 49 73 0 chr9 111369759 111369800 -12706372 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 6 1434 183 80 0 0 chr9 111369803 111369828 -12706344 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 6 1434 3236 72 2 2 chr9 111371909 111372316 -12703856 + MTB_Mm LTR MaLR 1 407 0 6 1434 2436 118 82 8 chr9 111372719 111373111 -12703061 - MTC LTR MaLR 0 421 1 6 1434 547 311 147 12 chr9 111373202 111373453 -12702719 - RMER15 LTR ERVL -14 561 277 6 1434 635 302 28 6 chr9 111373645 111373825 -12702347 + B3A SINE B2 1 184 -14 6 1434 243 0 0 0 chr9 111373922 111373949 -12702223 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1434 600 77 0 0 chr9 111373949 111374039 -12702133 + (GA)n Simple_repeat Simple_repeat 1 91 0 7 1434 444 288 7 40 chr9 111374050 111374202 -12701970 - RSINE1 SINE B4 -15 150 4 7 1434 401 296 40 92 chr9 111374271 111374497 -12701675 + MER90 LTR ERV1 1 269 -345 7 1434 467 300 23 0 chr9 111374566 111374696 -12701476 + ID_B1 SINE B4 82 214 -10 7 1434 1113 189 41 0 chr9 111375043 111375239 -12700933 + B3 SINE B2 1 204 -12 7 1434 479 255 36 18 chr9 111375335 111375447 -12700725 - RSINE1 SINE B4 -47 118 5 7 1434 1750 221 30 16 chr9 111375437 111375805 -12700367 - MTD LTR MaLR -15 404 32 7 1434 295 304 0 0 chr9 111375849 111375918 -12700254 - RSINE1 SINE B4 -22 143 75 7 1434 260 360 35 28 chr9 111375971 111376114 -12700058 - B4A SINE B4 -141 151 8 7 1434 213 351 114 0 chr9 111376144 111376258 -12699914 + L2a LINE L2 3293 3419 -7 7 1434 401 258 38 30 chr9 111376775 111376907 -12699265 - B1F2 SINE Alu -5 144 12 7 1434 722 229 76 11 chr9 111376796 111376981 -12699191 - ID_B1 SINE B4 -22 202 6 7 1434 453 36 0 0 chr9 111377527 111377582 -12698590 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1434 601 319 27 28 chr9 111381039 111381386 -12694786 - L1MA4 LINE L1 -1623 6021 5673 7 1434 343 248 132 47 chr9 111381680 111381786 -12694386 - PB1D10 SINE Alu -2 115 1 7 1434 241 304 151 11 chr9 111381706 111381799 -12694373 - ID_B1 SINE B4 -49 175 70 7 1434 895 223 117 0 chr9 111381874 111382062 -12694110 + ID_B1 SINE B4 11 220 -4 7 1434 858 257 64 5 chr9 111382866 111383085 -12693087 + B4A SINE B4 2 233 -59 7 1434 419 262 96 32 chr9 111384584 111384773 -12691399 + MER3 DNA MER1_type 1 183 -26 7 1434 525 58 9 80 chr9 111384835 111384948 -12691224 + (CA)n Simple_repeat Simple_repeat 1 105 0 7 1434 432 0 0 0 chr9 111385004 111385052 -12691120 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1434 414 0 0 0 chr9 111385369 111385415 -12690757 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 7 1434 235 222 19 0 chr9 111385457 111385511 -12690661 + CT-rich Low_complexity Low_complexity 1 55 0 7 1434 426 39 0 0 chr9 111385512 111385564 -12690608 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1434 1184 243 71 120 chr9 111386801 111387226 -12688946 - MTD LTR MaLR -15 404 1 7 1434 400 208 18 106 chr9 111387275 111387388 -12688784 - MTEb LTR MaLR -1 378 276 7 1434 378 0 0 0 chr9 111388027 111388069 -12688103 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1434 596 294 30 30 chr9 111388819 111389019 -12687153 - RMER15 LTR ERVL -27 548 349 7 1434 333 327 60 18 chr9 111390067 111390235 -12685937 + Zaphod DNA Tip100 3851 4025 -6 7 1434 422 295 20 27 chr9 111390346 111390496 -12685676 + CT-rich Low_complexity Low_complexity 2 150 0 7 1434 182 239 32 11 chr9 111390507 111390600 -12685572 + T-rich Low_complexity Low_complexity 5 99 0 7 1434 526 118 21 0 chr9 111390606 111390699 -12685473 + (TC)n Simple_repeat Simple_repeat 1 95 0 7 1434 316 287 33 100 chr9 111390699 111390819 -12685353 - B1F SINE Alu -5 144 33 7 1434 1152 298 79 46 chr9 111391714 111392231 -12683941 + RMER5 LTR ERV1 1 534 0 7 1434 974 258 60 36 chr9 111392603 111392884 -12683288 - B4 SINE B4 0 292 5 7 1434 343 251 17 33 chr9 111393490 111393671 -12682501 + C-rich Low_complexity Low_complexity 3 180 0 7 1434 548 211 65 8 chr9 111393753 111393877 -12682295 - B1F SINE Alu -5 144 14 7 1434 433 308 62 47 chr9 111394116 111394327 -12681845 - RMER12 LTR ERVK 0 1322 1109 7 1434 5069 124 25 6 chr9 111394593 111395383 -12680789 - RLTR22_Mur LTR ERVK -1043 805 1 7 1434 246 276 39 104 chr9 111395383 111395414 -12680758 + RLTR22_Mur LTR ERVK 163 181 -1667 7 1434 273 75 0 0 chr9 111395663 111395703 -12680469 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 7 1434 204 103 0 0 chr9 111395703 111395732 -12680440 + (CAAAC)n Simple_repeat Simple_repeat 5 33 0 7 1434 1366 220 61 11 chr9 111396211 111396570 -12679602 + MTE2b LTR MaLR 1 377 -2 7 1434 195 42 0 0 chr9 111396622 111396646 -12679526 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1434 311 132 15 0 chr9 111396646 111396714 -12679458 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1434 277 243 9 18 chr9 111396714 111396823 -12679349 + (CAGAGA)n Simple_repeat Simple_repeat 1 108 0 7 1434 733 321 9 9 chr9 111396854 111397077 -12679095 - RMER15 LTR ERVL -54 521 299 7 1434 203 179 36 0 chr9 111397217 111397273 -12678899 + CT-rich Low_complexity Low_complexity 1 58 0 7 1434 237 204 41 0 chr9 111397277 111397326 -12678846 - RMER15 LTR ERVL -524 51 1 7 1434 536 42 0 14 chr9 111397453 111397525 -12678647 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 7 1434 1620 0 0 0 chr9 111397536 111397817 -12678355 + (TTTCC)n Simple_repeat Simple_repeat 1 281 0 7 1434 306 0 0 0 chr9 111397817 111397851 -12678321 + (TCC)n Simple_repeat Simple_repeat 2 35 0 7 1434 324 70 0 0 chr9 111397848 111397891 -12678281 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 1434 410 288 19 9 chr9 111398350 111398455 -12677717 - PB1D10 SINE Alu -3 114 9 7 1434 474 61 0 0 chr9 111399263 111399329 -12676843 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 1434 773 279 113 9 chr9 111399333 111399564 -12676608 - B4 SINE B4 -15 277 23 7 1434 214 254 16 0 chr9 111400583 111400646 -12675526 + GA-rich Low_complexity Low_complexity 1 64 0 7 1434 279 292 11 11 chr9 111400682 111400772 -12675400 + CT-rich Low_complexity Low_complexity 5 94 0 7 1434 962 231 39 0 chr9 111401141 111401344 -12674828 + B3 SINE B2 4 214 -2 7 1434 282 204 0 53 chr9 111401580 111401637 -12674535 + B4A SINE B4 235 288 -4 7 1434 258 294 0 0 chr9 111403317 111403385 -12672787 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1434 433 285 155 35 chr9 111403399 111403657 -12672515 - B4A SINE B4 0 292 4 7 1434 225 0 0 0 chr9 111403819 111403844 -12672328 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 7 1434 721 293 12 19 chr9 111404560 111404720 -12671452 + RSINE1 SINE B4 3 161 -4 7 1434 24 0 0 0 chr9 111404720 111404744 -12671428 + AT_rich Low_complexity Low_complexity 1 24 0 7 1434 26 30 0 0 chr9 111404822 111404855 -12671317 + AT_rich Low_complexity Low_complexity 1 33 0 7 1434 183 333 23 35 chr9 111404881 111404968 -12671204 + MIR SINE MIR 97 182 -80 7 1434 504 294 73 10 chr9 111405463 111405474 -12670698 - ID_B1 SINE B4 -2 222 212 7 1434 450 0 0 0 chr9 111405474 111405524 -12670648 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 7 1434 504 294 73 10 chr9 111405524 111405718 -12670454 - ID_B1 SINE B4 -13 211 5 7 1434 843 216 63 21 chr9 111405738 111405927 -12670245 - B3 SINE B2 -19 197 1 7 1434 379 292 127 77 chr9 111406604 111406864 -12669308 - LTR33 LTR ERVL -229 286 14 7 1434 452 342 45 26 chr9 111407002 111407158 -12669014 + RSINE1 SINE B4 3 161 -4 7 1434 432 37 0 0 chr9 111407164 111407218 -12668954 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1434 221 171 0 0 chr9 111407562 111407603 -12668569 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1434 190 109 65 0 chr9 111407603 111407649 -12668523 + (TATAA)n Simple_repeat Simple_repeat 3 51 0 7 1434 1363 237 128 46 chr9 111407858 111408070 -12668102 - L1MC LINE L1 -889 5257 5030 7 1434 828 229 32 23 chr9 111408070 111408289 -12667883 - ID_B1 SINE B4 -2 222 2 7 1434 1363 237 128 46 chr9 111408289 111408664 -12667508 - L1MC LINE L1 -1117 5029 4622 7 1434 256 171 0 0 chr9 111408664 111408705 -12667467 - RLTR28 LTR ERVL -481 43 3 7 1434 1747 215 151 6 chr9 111408804 111409282 -12666890 + RMER15 LTR ERVL 27 573 -2 7 1434 267 355 0 0 chr9 111409284 111409408 -12666764 - L1M5 LINE L1 -1765 4381 4258 7 1434 490 244 154 57 chr9 111409416 111409614 -12666558 - L1M3 LINE L1 -2914 3226 3025 7 1434 476 111 12 0 chr9 111409614 111409695 -12666477 + (TATG)n Simple_repeat Simple_repeat 4 85 0 7 1434 490 244 154 57 chr9 111409695 111409879 -12666293 - L1M3 LINE L1 -3116 3024 2807 7 1434 810 201 21 124 chr9 111409880 111410073 -12666099 - B3A SINE B2 -9 186 14 7 1434 897 275 90 48 chr9 111410122 111410622 -12665550 - L1M3 LINE L1 -3378 2762 2242 7 1434 3121 258 51 23 chr9 111410622 111411105 -12665067 + RCHARR1 DNA MER1_type 4 506 -468 7 179 978 209 85 20 chr9 111411105 111411305 -12664867 + B3 SINE B2 4 216 0 7 1435 3121 258 51 23 chr9 111411305 111411679 -12664493 + RCHARR1 DNA MER1_type 507 884 -90 7 1435 331 231 14 176 chr9 111411702 111411783 -12664389 - B1F2 SINE Alu 0 149 91 7 1435 1615 203 118 18 chr9 111411783 111412164 -12664008 - MTD LTR MaLR 0 419 1 7 1435 331 231 14 176 chr9 111412164 111412224 -12663948 - B1F2 SINE Alu -59 90 31 7 1435 2997 65 0 0 chr9 111412229 111412600 -12663572 + L1_Mus1 LINE L1 6197 6567 0 7 1435 1573 202 14 77 chr9 111412619 111412983 -12663189 + ORR1C2 LTR MaLR 16 356 -28 7 1435 234 0 0 0 chr9 111413666 111413692 -12662480 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1435 3153 17 0 0 chr9 111413993 111414339 -12661833 - ORR1A0 LTR MaLR 0 346 1 7 1435 298 279 58 0 chr9 111415469 111415573 -12660599 + RMER15 LTR ERVL 455 564 -11 7 1435 250 328 15 0 chr9 111415607 111415674 -12660498 - MER81 DNA AcHobo -29 85 18 7 1435 250 276 0 0 chr9 111416352 111416410 -12659762 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 7 1435 645 301 70 12 chr9 111416414 111416673 -12659499 - B4A SINE B4 -18 274 1 7 1435 760 218 5 6 chr9 111416680 111416823 -12659349 - ID_B1 SINE B4 -70 222 81 7 1435 356 312 35 84 chr9 111416681 111416884 -12659288 + YREP_Mm Unknown Unknown 183 375 -1437 7 1435 1185 79 0 0 chr9 111416899 111417180 -12658992 + (TG)n Simple_repeat Simple_repeat 1 281 0 7 1435 480 286 103 7 chr9 111417199 111417354 -12658818 - B3A SINE B2 -28 170 1 7 1435 245 75 25 0 chr9 111417926 111417966 -12658206 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 7 1435 833 244 88 18 chr9 111418058 111418330 -12657842 + B4 SINE B4 1 291 -1 8 1435 351 223 0 0 chr9 111418347 111418459 -12657713 + (CA)n Simple_repeat Simple_repeat 1 112 0 8 1435 313 120 20 0 chr9 111418460 111418510 -12657662 + HAL1-3A_ME LINE L1 1978 2028 -830 8 1435 630 141 0 0 chr9 111418510 111418638 -12657534 + (CA)n Simple_repeat Simple_repeat 2 129 0 8 1435 253 226 0 0 chr9 111418799 111418852 -12657320 - MLT1E3 LTR MaLR 0 624 572 8 1435 1856 152 9 31 chr9 111418951 111419276 -12656896 + ORR1A1 LTR MaLR 21 338 -8 8 1435 367 255 19 10 chr9 111419361 111419464 -12656708 + MT2A LTR ERVL 270 373 -160 8 1435 423 0 0 0 chr9 111419515 111419562 -12656610 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1435 200 34 0 33 chr9 111419562 111419591 -12656581 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1435 469 260 19 0 chr9 111419931 111420035 -12656137 + PB1D7 SINE Alu 14 119 -1 8 1435 219 36 0 0 chr9 111420060 111420088 -12656084 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 8 1435 996 216 26 0 chr9 111420150 111420340 -12655832 - B3A SINE B2 -3 195 1 8 1435 608 294 146 69 chr9 111420906 111421358 -12654814 + Charlie2a DNA MER1_type 1472 1958 -903 8 1435 515 268 9 0 chr9 111421458 111421570 -12654602 + ID_B1 SINE B4 2 114 -110 8 1435 298 253 33 44 chr9 111421512 111421603 -12654569 + PB1D9 SINE Alu 20 109 -11 8 1435 351 110 342 43 chr9 111422669 111422783 -12653389 - B2_Mm2 SINE B2 -1 194 47 8 1435 404 303 122 92 chr9 111423022 111423380 -12652792 + ORR1E LTR MaLR 1 368 -6 8 1435 366 23 0 0 chr9 111423989 111424032 -12652140 + (TAA)n Simple_repeat Simple_repeat 1 43 0 8 1435 234 0 0 0 chr9 111424052 111424078 -12652094 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1435 1171 68 0 7 chr9 111424078 111424226 -12651946 - B1_Mus1 SINE Alu 0 148 2 8 1435 577 257 22 66 chr9 111425235 111425418 -12650754 - RLTR31_Mur LTR ERVK 0 553 379 8 1435 861 277 41 60 chr9 111425454 111425836 -12650336 - RLTR17 LTR ERVK -231 461 32 8 1435 467 125 175 0 chr9 111426425 111426505 -12649667 + ID_B1 SINE B4 1 94 -130 8 1435 1215 222 49 15 chr9 111426506 111426835 -12649337 + RLTR15 LTR ERVK 1 340 -19 8 1435 540 230 71 0 chr9 111426848 111426974 -12649198 + ID_B1 SINE B4 90 224 0 8 1435 441 333 0 7 chr9 111427103 111427251 -12648921 + HAL1-2a_MD LINE L1 2346 2492 -532 8 1435 1067 210 284 0 chr9 111427259 111427583 -12648589 - Lx LINE L1 -336 7137 6722 8 1435 5651 47 65 1 chr9 111429042 111429740 -12646432 + RLTR4_Mm LTR ERV1 1 742 0 8 1435 184 43 0 0 chr9 111429897 111429920 -12646252 - L3 LINE CR1 -501 3988 3966 8 1435 27 0 0 0 chr9 111430314 111430341 -12645831 + AT_rich Low_complexity Low_complexity 1 27 0 8 1435 1897 120 41 22 chr9 111430685 111431001 -12645171 - Lx LINE L1 0 6654 6333 8 1435 2896 89 37 0 chr9 111431049 111431455 -12644717 - BGLII LTR ERVK 0 421 1 8 1435 548 326 31 10 chr9 111431455 111431647 -12644525 + B3A SINE B2 3 198 0 8 1435 335 346 48 16 chr9 111431650 111431838 -12644334 - L1MB5 LINE L1 -341 5833 5640 8 1435 282 286 10 30 chr9 111431869 111431970 -12644202 + L1_Rod LINE L1 2835 2933 -2914 8 1435 435 255 39 0 chr9 111432944 111433046 -12643126 + Lx8 LINE L1 6917 7022 -451 8 1435 241 248 60 0 chr9 111433096 111433182 -12642990 - ID4_ SINE ID -54 98 3 8 1435 249 212 15 0 chr9 111433438 111433504 -12642668 + Lx9 LINE L1 7578 7644 0 8 1435 5514 55 1 0 chr9 111433735 111434751 -12641421 + L1_Mus2 LINE L1 5220 6237 -329 8 1435 206 118 0 0 chr9 111434751 111434785 -12641387 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1435 1034 298 52 54 chr9 111434796 111435204 -12640968 + Lx8 LINE L1 7066 7472 -1 8 1435 21 36 0 0 chr9 111436154 111436182 -12639990 + AT_rich Low_complexity Low_complexity 1 28 0 8 1435 9416 106 68 44 chr9 111438249 111440839 -12635333 + L1VL2 LINE L1 441 3278 -2599 8 1435 2179 179 22 20 chr9 111442166 111442570 -12633602 - MTD LTR MaLR 0 419 15 8 1435 553 254 29 0 chr9 111442582 111442720 -12633452 - MTD-int LTR MaLR 0 1258 1117 8 1435 2187 151 12 3 chr9 111442722 111443067 -12633105 + Lx2B LINE L1 6454 6801 -199 8 1435 268 214 0 0 chr9 111443035 111443077 -12633095 + Lx4A LINE L1 6865 6906 -152 8 1435 373 308 267 25 chr9 111444643 111444921 -12631251 + MLT1A0 LTR MaLR 2 346 -62 8 1435 2275 149 11 19 chr9 111445988 111446365 -12629807 + ORR1C1 LTR MaLR 5 378 0 8 1435 2382 79 9 0 chr9 111446732 111447048 -12629124 - ORR1A2 LTR MaLR -8 319 1 8 1435 207 239 0 0 chr9 111447524 111447591 -12628581 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 8 1435 212 253 145 0 chr9 111447627 111447710 -12628462 - B3A SINE B2 -84 114 20 8 1435 485 211 106 0 chr9 111448635 111448739 -12627433 + B3A SINE B2 8 122 -76 8 1435 420 20 0 0 chr9 111448902 111448951 -12627221 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1435 22 35 0 0 chr9 111449073 111449102 -12627070 + AT_rich Low_complexity Low_complexity 1 29 0 8 1435 26 50 0 0 chr9 111449330 111449370 -12626802 + AT_rich Low_complexity Low_complexity 1 40 0 8 1435 588 175 57 21 chr9 111449370 111449510 -12626662 - Lx4A LINE L1 -2 7056 6912 8 1435 738 121 6 31 chr9 111450138 111450300 -12625872 + (TG)n Simple_repeat Simple_repeat 1 158 0 8 1435 274 350 25 81 chr9 111450302 111450328 -12625844 - B4A SINE B4 0 292 268 8 1435 246 91 0 52 chr9 111450328 111450386 -12625786 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1435 577 262 30 40 chr9 111450386 111450595 -12625577 - ID_B1 SINE B4 -25 267 69 8 1435 396 130 0 0 chr9 111450687 111450756 -12625416 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1435 282 152 0 0 chr9 111451331 111451390 -12624782 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1435 405 234 109 115 chr9 111451571 111451745 -12624427 + B4A SINE B4 3 175 -117 8 1435 459 0 0 0 chr9 111451844 111451895 -12624277 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1435 207 0 0 0 chr9 111451895 111451917 -12624255 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1435 261 0 0 0 chr9 111451917 111451945 -12624227 + (GA)n Simple_repeat Simple_repeat 2 30 0 8 1435 524 88 39 50 chr9 111452561 111452741 -12623431 + (GTGTG)n Simple_repeat Simple_repeat 3 180 0 8 1435 544 243 60 87 chr9 111452741 111452926 -12623246 - B3A SINE B2 -16 182 3 8 1435 258 222 37 0 chr9 111454068 111454122 -12622050 - Lx8 LINE L1 -1571 5902 5847 8 1435 232 286 29 0 chr9 111454164 111454234 -12621938 - L1M3 LINE L1 -459 5709 5638 8 1435 621 245 20 55 chr9 111454581 111454780 -12621392 - B3A SINE B2 -6 192 1 8 1435 31 82 0 0 chr9 111455286 111455359 -12620813 + AT_rich Low_complexity Low_complexity 1 73 0 8 1435 21 0 0 0 chr9 111455395 111455416 -12620756 + GC_rich Low_complexity Low_complexity 1 21 0 8 1435 1308 228 25 11 chr9 111457241 111457525 -12618647 - MTE2b LTR MaLR -7 372 85 8 1435 2389 98 10 2 chr9 111458051 111458415 -12617757 - Lx2 LINE L1 -619 6381 6021 8 1435 285 200 10 29 chr9 111458900 111459003 -12617169 + (CATA)n Simple_repeat Simple_repeat 4 104 0 8 1435 242 261 108 0 chr9 111459548 111459613 -12616559 + ID4_ SINE ID 3 74 -9 8 1435 432 0 0 0 chr9 111460101 111460149 -12616023 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1435 208 77 0 49 chr9 111460439 111460480 -12615692 + (TCC)n Simple_repeat Simple_repeat 2 40 0 8 1435 392 184 165 9 chr9 111460481 111460596 -12615576 - B1F SINE Alu -15 134 2 8 1435 310 264 64 32 chr9 111460853 111460978 -12615194 + CR1_Mam LINE CR1 324 452 -1752 8 1435 315 105 0 0 chr9 111461664 111461721 -12614451 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 1435 1141 51 29 0 chr9 111462241 111462379 -12613793 + B1_Mus1 SINE Alu 3 144 -4 8 1435 288 0 0 0 chr9 111462390 111462422 -12613750 + (CAT)n Simple_repeat Simple_repeat 1 32 0 8 1435 189 0 0 0 chr9 111462422 111462443 -12613729 + (CAA)n Simple_repeat Simple_repeat 3 23 0 8 1435 288 0 0 0 chr9 111462929 111462961 -12613211 + (TCCTG)n Simple_repeat Simple_repeat 4 35 0 8 1435 524 339 31 34 chr9 111462961 111463211 -12612961 - MLT1F LTR MaLR -302 253 1 8 1435 764 239 114 5 chr9 111463697 111463899 -12612273 + ID_B1 SINE B4 1 224 0 8 1435 180 0 0 0 chr9 111465367 111465387 -12610785 + (CGGGGG)n Simple_repeat Simple_repeat 2 21 0 8 1435 718 208 35 92 chr9 111466386 111466402 -12609770 - B3 SINE B2 0 216 199 8 1435 825 240 80 0 chr9 111466402 111466602 -12609570 - B3 SINE B2 0 216 1 8 1435 746 208 35 92 chr9 111466602 111466813 -12609359 - B3A SINE B2 -18 198 2 8 1435 3471 13 31 0 chr9 111467260 111467644 -12608528 + MTA_Mm LTR MaLR 1 396 0 8 1435 9350 29 6 2 chr9 111467644 111468737 -12607435 + MTA_Mm-int LTR MaLR 1 1098 0 8 1435 3433 10 34 0 chr9 111468737 111469120 -12607052 + MTA_Mm LTR MaLR 1 396 0 8 1435 873 96 0 0 chr9 111470275 111470400 -12605772 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 8 1435 945 136 0 0 chr9 111470407 111470561 -12605611 + (TTC)n Simple_repeat Simple_repeat 2 155 0 8 1435 1201 36 0 0 chr9 111470562 111470702 -12605470 - B1_Mm SINE Alu -7 140 1 8 1435 647 181 38 76 chr9 111470803 111470948 -12605224 - B1_Mur1 SINE Alu 0 149 11 8 1435 322 206 106 21 chr9 111470969 111471063 -12605109 - B1F SINE Alu -37 112 11 8 1435 388 234 33 83 chr9 111470985 111471106 -12605066 - ID_B1 SINE B4 -52 172 58 8 1435 181 321 130 29 chr9 111471251 111471389 -12604783 + MIRb SINE MIR 4 155 -113 8 1435 343 270 11 22 chr9 111471555 111471646 -12604526 - B4A SINE B4 -198 94 5 8 1435 239 0 32 0 chr9 111471892 111471923 -12604249 + (TGG)n Simple_repeat Simple_repeat 1 32 0 8 1435 207 162 0 0 chr9 111472597 111472634 -12603538 + T-rich Low_complexity Low_complexity 3 39 0 8 1435 434 262 76 38 chr9 111472760 111472891 -12603281 - B1F SINE Alu -1 148 13 8 1435 338 285 67 40 chr9 111472925 111473030 -12603142 - MARNA DNA Mariner -270 316 208 9 1435 396 0 0 0 chr9 111473030 111473074 -12603098 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1435 338 285 67 40 chr9 111473074 111473118 -12603054 - MARNA DNA Mariner -379 207 164 9 1435 803 212 107 15 chr9 111473123 111473319 -12602853 + B3 SINE B2 3 216 0 9 1435 410 241 124 104 chr9 111473415 111473656 -12602516 + LTR81B LTR ERV1? 66 311 -1082 9 1435 1316 263 33 69 chr9 111474239 111474599 -12601573 + ORR1E LTR MaLR 1 347 -12 9 1435 405 0 0 0 chr9 111474710 111474755 -12601417 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1435 709 239 114 5 chr9 111475461 111475654 -12600518 + B3 SINE B2 3 216 0 9 1435 269 237 0 63 chr9 111475666 111475729 -12600443 - ID_B1 SINE B4 -11 213 155 9 1435 282 318 67 37 chr9 111475745 111475879 -12600293 - MLT1H LTR MaLR -377 172 35 9 1435 458 278 15 8 chr9 111475997 111476131 -12600041 - B1F1 SINE Alu -10 139 5 9 1435 291 267 25 88 chr9 111476016 111476176 -12599996 - ID_B1 SINE B4 -26 198 49 9 1435 219 69 0 0 chr9 111476411 111476440 -12599732 + (CAGAG)n Simple_repeat Simple_repeat 1 29 0 9 1435 245 288 0 0 chr9 111476750 111476809 -12599363 + CT-rich Low_complexity Low_complexity 4 62 0 9 1435 653 277 52 76 chr9 111476834 111477149 -12599023 - B4A SINE B4 -20 272 2 9 1435 21 0 0 0 chr9 111477223 111477244 -12598928 + AT_rich Low_complexity Low_complexity 1 21 0 9 1435 23 0 0 0 chr9 111477898 111477921 -12598251 + AT_rich Low_complexity Low_complexity 1 23 0 9 1435 556 268 265 34 chr9 111478910 111479265 -12596907 + MER74C LTR ERVL 6 442 -18 9 1435 255 269 84 21 chr9 111480473 111480568 -12595604 - MT2B2 LTR ERVL -312 272 172 9 1435 256 271 165 0 chr9 111480490 111480575 -12595597 - PB1D10 SINE Alu -18 99 1 9 1435 302 241 23 41 chr9 111481837 111482058 -12594114 + RMER17D LTR ERVK 294 510 -379 9 1435 302 270 0 13 chr9 111482008 111482083 -12594089 - B4 SINE B4 -6 286 213 9 1435 761 53 0 0 chr9 111482083 111482177 -12593995 - L1Md_F2 LINE L1 -289 6293 6200 9 1435 211 333 61 12 chr9 111482183 111482265 -12593907 - B1F2 SINE Alu -63 86 1 9 1435 488 328 7 28 chr9 111482265 111482353 -12593819 - B4 SINE B4 -206 86 2 9 1435 6462 8 0 0 chr9 111482718 111483423 -12592749 - L1Md_T LINE L1 0 6582 5878 9 1435 381 43 0 0 chr9 111483423 111483470 -12592702 + L1_Mm LINE L1 2716 2762 -3121 9 1435 3611 47 0 7 chr9 111483509 111483956 -12592216 + L1Md_F2 LINE L1 6139 6582 0 9 1435 578 308 80 35 chr9 111484372 111484658 -12591514 + L1MA5 LINE L1 6002 6300 0 9 1435 692 298 72 67 chr9 111484763 111484957 -12591215 + B4 SINE B4 86 280 -12 9 1435 270 282 0 14 chr9 111484969 111485041 -12591131 + (CA)n Simple_repeat Simple_repeat 1 71 0 9 1435 226 287 165 35 chr9 111485404 111485574 -12590598 + L2c LINE L2 3110 3301 -86 9 1435 180 200 0 0 chr9 111487048 111487088 -12589084 + CT-rich Low_complexity Low_complexity 3 42 0 9 1435 475 222 50 48 chr9 111487127 111487296 -12588876 + B1F1 SINE Alu 1 148 -1 9 1435 330 26 0 0 chr9 111488296 111488335 -12587837 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 9 1435 327 85 0 0 chr9 111488658 111488705 -12587467 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1435 1025 271 4 56 chr9 111488709 111488889 -12587283 - B4 SINE B4 -27 265 88 9 1435 845 96 0 33 chr9 111488889 111489040 -12587132 + (TCCC)n Simple_repeat Simple_repeat 1 146 0 9 1435 1025 271 4 56 chr9 111489040 111489129 -12587043 - B4 SINE B4 -205 87 10 9 1435 273 265 14 14 chr9 111489067 111489136 -12587036 - ID4_ SINE ID -14 69 1 9 1435 288 158 0 0 chr9 111490575 111490632 -12585540 + A-rich Low_complexity Low_complexity 3 59 0 9 1435 226 312 125 0 chr9 111490880 111490992 -12585180 + MER5A DNA MER1_type 3 128 -61 9 1435 269 127 0 35 chr9 111491118 111491175 -12584997 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 9 1435 278 293 35 0 chr9 111491191 111491249 -12584923 + RSINE1 SINE B4 82 141 -24 9 1435 342 115 0 0 chr9 111491249 111491301 -12584871 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1435 772 142 44 7 chr9 111491565 111491700 -12584472 - B1_Mur3 SINE Alu -9 140 1 9 1435 512 309 24 37 chr9 111491917 111492213 -12583959 - B4A SINE B4 0 292 1 9 1435 517 248 37 67 chr9 111492289 111492453 -12583719 - B3 SINE B2 -17 199 41 9 1435 2696 143 19 26 chr9 111492456 111492880 -12583292 + MTC LTR MaLR 1 421 0 9 1435 5237 174 113 42 chr9 111492880 111494043 -12582129 + MTC-int LTR MaLR 1 1246 -12 9 1435 3040 47 0 0 chr9 111494051 111494413 -12581759 - L1_Mus1 LINE L1 -302 6265 5904 9 1435 2221 51 22 0 chr9 111494413 111494689 -12581483 + L1_Mus1 LINE L1 6286 6567 0 9 1435 981 204 104 0 chr9 111494717 111494918 -12581254 + MTC LTR MaLR 2 223 -198 9 1435 241 123 0 21 chr9 111494952 111495000 -12581172 - B3A SINE B2 -151 44 1 9 1435 284 258 78 62 chr9 111495178 111495306 -12580866 - MIRb SINE MIR -1 267 138 9 1435 22 0 0 0 chr9 111495414 111495436 -12580736 + AT_rich Low_complexity Low_complexity 1 22 0 9 1435 185 94 31 0 chr9 111495578 111495610 -12580562 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 9 1435 755 231 0 42 chr9 111495610 111495777 -12580395 - RSINE1 SINE B4 -4 161 2 9 1435 192 125 0 0 chr9 111497728 111497760 -12578412 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1435 568 175 0 49 chr9 111497760 111497862 -12578310 - B3A SINE B2 -60 138 42 9 1435 572 345 38 55 chr9 111498644 111499009 -12577163 - L1MEe LINE L1 -2311 3835 3477 9 1435 369 308 134 17 chr9 111499129 111499367 -12576805 - L1MEe LINE L1 -2825 3321 3056 9 1435 213 283 0 0 chr9 111499376 111499422 -12576750 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1435 397 314 60 65 chr9 111499459 111499660 -12576512 - L1MEe LINE L1 -4091 2075 1876 9 1435 669 36 0 0 chr9 111499873 111499957 -12576215 + (TCCC)n Simple_repeat Simple_repeat 2 85 0 9 1435 353 341 107 47 chr9 111500264 111500686 -12575486 - L1MEd LINE L1 -5072 1047 601 1 1435 462 65 0 0 chr9 111500795 111500857 -12575315 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 2 1435 330 132 0 0 chr9 111500867 111500920 -12575252 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 3 1435 246 341 0 0 chr9 111500931 111501013 -12575159 + CT-rich Low_complexity Low_complexity 1 82 0 4 1435 428 276 19 0 chr9 111501956 111502061 -12574111 - PB1D10 SINE Alu -10 107 1 5 1435 353 219 49 0 chr9 111502263 111502345 -12573827 - MER5A1 DNA MER1_type -59 107 22 6 1435 208 277 123 25 chr9 111502627 111502749 -12573423 - L2 LINE L2 -798 2621 2488 7 1435 721 207 44 83 chr9 111503851 111504056 -12572116 - B3A SINE B2 0 198 2 8 1435 200 34 0 33 chr9 111504580 111504610 -12571562 + (TTA)n Simple_repeat Simple_repeat 2 30 0 9 1435 495 266 245 14 chr9 111505442 111505676 -12570496 + B4A SINE B4 1 288 -4 1 1435 833 188 199 0 chr9 111506133 111506309 -12569863 + B3 SINE B2 1 211 -5 1 1435 448 301 29 29 chr9 111506352 111506523 -12569649 - B4A SINE B4 -121 171 1 1 1435 510 61 0 0 chr9 111507277 111507343 -12568829 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1435 435 68 0 0 chr9 111507366 111507425 -12568747 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1435 333 0 0 0 chr9 111508283 111508320 -12567852 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1435 474 283 26 29 chr9 111510024 111510233 -12565939 + CT-rich Low_complexity Low_complexity 1 208 0 1 1435 272 319 0 0 chr9 111510234 111510306 -12565866 - ID4_ SINE ID -11 72 1 1 1435 837 131 0 0 chr9 111510953 111511129 -12565043 + (TC)n Simple_repeat Simple_repeat 1 176 0 1 1435 960 245 65 19 chr9 111511895 111512157 -12564015 + B4 SINE B4 1 274 -18 1 1435 432 336 81 22 chr9 111512271 111512493 -12563679 - Tigger5 DNA MER2_type -2171 235 1 2 1435 489 246 110 0 chr9 111512510 111512628 -12563544 + RSINE1 SINE B4 2 132 -33 2 1435 1212 68 0 0 chr9 111512896 111513044 -12563128 + B1_Mus1 SINE Alu 1 148 0 2 1435 327 305 128 63 chr9 111513206 111513631 -12562541 + HAL1 LINE L1 1573 2033 -474 2 1435 1134 82 0 0 chr9 111513631 111513778 -12562394 - B1_Mus2 SINE Alu 0 147 1 2 1435 327 305 128 63 chr9 111513778 111513860 -12562312 + HAL1 LINE L1 2034 2113 -394 2 1435 577 289 13 13 chr9 111514220 111514378 -12561794 + RSINE1 SINE B4 8 165 0 2 1435 290 247 37 0 chr9 111514380 111514461 -12561711 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1435 323 286 13 0 chr9 111514580 111514657 -12561515 - ID4 SINE ID -4 79 2 2 1435 423 38 0 0 chr9 111514663 111514716 -12561456 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1435 316 284 0 50 chr9 111514720 111514820 -12561352 - PB1D10 SINE Alu -8 109 15 2 1435 319 272 83 55 chr9 111515071 111515180 -12560992 - PB1D10 SINE Alu -5 112 1 3 1435 387 0 0 0 chr9 111515213 111515256 -12560916 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1435 713 254 54 81 chr9 111515299 111515633 -12560539 - Tigger7 DNA MER2_type -30 2461 2137 3 1435 459 336 130 4 chr9 111515605 111515835 -12560337 - Tigger7 DNA MER2_type -2198 293 35 3 1435 488 139 23 0 chr9 111516427 111516513 -12559659 - 5S rRNA rRNA -27 94 7 3 1435 479 340 91 0 chr9 111516691 111516944 -12559228 - B4A SINE B4 -8 284 9 3 1435 497 55 0 14 chr9 111517219 111517293 -12558879 + RMER4A LTR ERVK 6 78 -388 3 1435 2128 159 29 5 chr9 111517419 111517798 -12558374 + RMER4A LTR ERVK 77 464 -2 3 1435 891 240 25 0 chr9 111517952 111518156 -12558016 + B3 SINE B2 2 210 -6 3 1435 23 0 0 0 chr9 111518326 111518349 -12557823 + AT_rich Low_complexity Low_complexity 1 23 0 3 1435 232 277 23 35 chr9 111519079 111519165 -12557007 + L1M1 LINE L1 5840 5924 -376 3 1435 554 51 13 0 chr9 111519177 111519255 -12556917 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 3 1435 272 143 18 0 chr9 111519284 111519340 -12556832 + (TATG)n Simple_repeat Simple_repeat 4 60 0 4 1435 1150 62 12 0 chr9 111519341 111519501 -12556671 + (TCTA)n Simple_repeat Simple_repeat 1 162 0 4 1435 304 309 0 0 chr9 111519861 111519942 -12556230 + ID_B1 SINE B4 139 219 -5 4 1435 561 52 0 0 chr9 111519944 111520021 -12556151 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1435 263 254 129 48 chr9 111520646 111520832 -12555340 + L1ME4a LINE L1 5918 6118 -6 4 1435 756 271 14 36 chr9 111521432 111521708 -12554464 - B4A SINE B4 -18 274 5 4 1435 394 261 0 0 chr9 111522389 111522476 -12553696 - ID2 SINE ID -58 94 8 4 1435 353 298 24 94 chr9 111523144 111523300 -12552872 + B4 SINE B4 86 231 -61 4 1435 353 359 39 7 chr9 111523300 111523454 -12552718 + RSINE1 SINE B4 3 161 -4 4 1435 318 26 0 0 chr9 111523521 111523560 -12552612 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 4 1435 378 0 0 0 chr9 111524662 111524704 -12551468 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1435 189 0 0 0 chr9 111524704 111524724 -12551448 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1435 483 302 8 0 chr9 111524791 111524917 -12551255 - B4 SINE B4 -161 131 5 5 1435 2283 141 28 14 chr9 111525336 111525696 -12550476 + ORR1B2 LTR MaLR 1 365 -2 5 1435 270 0 0 0 chr9 111526235 111526265 -12549907 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 1435 329 179 0 69 chr9 111526770 111526842 -12549330 + ID4_ SINE ID 14 80 -3 5 1435 189 0 0 0 chr9 111527084 111527105 -12549067 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1435 1092 86 0 0 chr9 111527106 111527246 -12548926 - B1_Mus1 SINE Alu -7 141 2 5 1435 21 0 0 0 chr9 111527348 111527369 -12548803 + AT_rich Low_complexity Low_complexity 1 21 0 5 1435 420 97 0 0 chr9 111527394 111527456 -12548716 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1435 292 291 0 44 chr9 111527457 111527547 -12548625 - RSINE1 SINE B4 -40 125 40 6 1435 680 310 14 18 chr9 111528279 111528496 -12547676 - ID_B1 SINE B4 -8 216 1 6 1435 255 331 0 0 chr9 111528959 111529137 -12547035 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 1435 893 270 72 22 chr9 111529140 111529416 -12546756 - B4A SINE B4 -2 290 1 6 1435 937 285 17 14 chr9 111529845 111530133 -12546039 - B4 SINE B4 -2 290 2 6 1435 540 0 0 0 chr9 111530541 111530601 -12545571 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1435 275 346 71 80 chr9 111531283 111531509 -12544663 + LTR16A1 LTR ERVL 9 232 -224 6 1435 536 267 182 28 chr9 111532262 111532443 -12543729 + B4A SINE B4 84 292 0 6 1435 774 86 0 0 chr9 111532468 111532584 -12543588 + (CA)n Simple_repeat Simple_repeat 1 116 0 6 1435 545 255 87 0 chr9 111533030 111533191 -12542981 + Lx8 LINE L1 6951 7125 -348 6 1435 180 0 0 0 chr9 111533223 111533243 -12542929 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1435 378 244 43 0 chr9 111533247 111533362 -12542810 + Lx8 LINE L1 7352 7471 -2 6 1435 24 32 0 0 chr9 111533362 111533393 -12542779 + AT_rich Low_complexity Low_complexity 1 31 0 7 1435 194 192 19 0 chr9 111533659 111533711 -12542461 + (TGG)n Simple_repeat Simple_repeat 3 55 0 7 1435 660 282 29 69 chr9 111533875 111533891 -12542281 + B4A SINE B4 8 23 -269 7 1435 873 214 91 10 chr9 111533891 111534099 -12542073 - URR1B DNA MER1_type 0 225 1 7 1435 660 282 29 69 chr9 111534099 111534356 -12541816 + B4A SINE B4 24 270 -22 7 1435 447 52 0 0 chr9 111534357 111534415 -12541757 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1435 289 269 32 21 chr9 111534422 111534517 -12541655 + ID_B1 SINE B4 40 135 -89 7 1435 1330 163 12 8 chr9 111534521 111534774 -12541398 + L1Md_A LINE L1 6329 6582 0 7 1435 385 0 77 0 chr9 111535049 111535114 -12541058 + (TTTTTG)n Simple_repeat Simple_repeat 2 71 0 7 1435 591 238 153 20 chr9 111535128 111535278 -12540894 + B3A SINE B2 1 170 -28 7 1435 811 240 169 49 chr9 111536446 111536853 -12539319 + RMER5 LTR ERV1 49 504 -30 8 1435 227 211 10 31 chr9 111538170 111538268 -12537904 + (TATG)n Simple_repeat Simple_repeat 2 97 0 8 1435 210 319 20 50 chr9 111538632 111538731 -12537441 + PB1 SINE Alu 2 97 -30 8 1435 275 246 29 0 chr9 111538766 111538835 -12537337 + ID4_ SINE ID 3 73 -10 8 1435 294 128 0 0 chr9 111539355 111539402 -12536770 - B3A SINE B2 -133 65 19 8 1435 429 284 39 16 chr9 111539473 111539602 -12536570 - B1F SINE Alu -11 138 7 8 1435 491 300 39 20 chr9 111539631 111539784 -12536388 + RSINE1 SINE B4 4 159 -6 8 1435 368 254 49 66 chr9 111539914 111540118 -12536054 + L1MA4A LINE L1 5707 5918 -385 8 1435 480 77 0 0 chr9 111540141 111540206 -12535966 + (TATG)n Simple_repeat Simple_repeat 1 65 0 8 1435 2516 242 26 35 chr9 111540989 111541168 -12535004 + RMER1A Other Other 1 132 -898 8 1435 489 58 0 0 chr9 111541168 111541237 -12534935 + (TG)n Simple_repeat Simple_repeat 1 69 0 9 1435 2516 262 98 103 chr9 111541237 111542132 -12534040 + RMER1A Other Other 133 1028 -2 8 1436 708 260 6 11 chr9 111542307 111542486 -12533686 - B3A SINE B2 -8 190 13 9 1436 231 36 0 0 chr9 111542974 111543002 -12533170 + (TGGG)n Simple_repeat Simple_repeat 3 30 0 9 1436 221 346 146 45 chr9 111543180 111544168 -12532004 - L2 LINE L2 -498 2921 1834 9 1436 349 322 98 9 chr9 111544402 111544643 -12531529 - B4 SINE B4 0 292 10 9 1436 191 161 100 67 chr9 111544794 111544854 -12531318 - MIR3 SINE MIR -29 179 118 9 1436 2047 133 22 0 chr9 111544860 111545182 -12530990 + ORR1A4 LTR MaLR 1 329 0 9 1436 243 0 0 0 chr9 111545881 111545908 -12530264 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1436 811 0 20 0 chr9 111546224 111546323 -12529849 + (TG)n Simple_repeat Simple_repeat 2 102 0 9 1436 1032 291 43 4 chr9 111546357 111546633 -12529539 - B4A SINE B4 -4 288 2 9 1436 420 177 12 37 chr9 111547136 111547218 -12528954 - ID_B1 SINE B4 -3 221 142 1 1436 628 244 19 36 chr9 111548404 111548578 -12527594 + MLT1B LTR MaLR 10 185 -282 1 1436 736 292 51 36 chr9 111548578 111548852 -12527320 + B4A SINE B4 1 278 -14 1 1436 422 313 104 77 chr9 111548852 111548886 -12527286 + MLT1B LTR MaLR 186 215 -252 1 1436 192 77 0 0 chr9 111548886 111548912 -12527260 + (CATG)n Simple_repeat Simple_repeat 3 28 0 1 1436 512 244 107 47 chr9 111548912 111549146 -12527026 + MLT1B LTR MaLR 181 465 -2 1 1436 235 353 40 0 chr9 111550305 111550455 -12525717 + L2c LINE L2 2536 2691 -728 1 1436 326 251 3 44 chr9 111550754 111551127 -12525045 + (CCCTG)n Simple_repeat Simple_repeat 1 357 0 1 1436 299 247 0 44 chr9 111551239 111551421 -12524751 + (CCCTG)n Simple_repeat Simple_repeat 2 175 0 1 1436 33 0 0 0 chr9 111551503 111551536 -12524636 + AT_rich Low_complexity Low_complexity 1 33 0 1 1436 230 314 16 16 chr9 111551540 111551663 -12524509 - L1MC4 LINE L1 -2 8040 7918 1 1436 496 318 81 29 chr9 111551896 111552168 -12524004 - L1MC4 LINE L1 -354 7688 7403 1 1436 206 325 24 57 chr9 111552204 111552328 -12523844 + L2c LINE L2 3268 3387 0 1 1436 470 225 1 39 chr9 111553308 111553440 -12522732 - PB1D9 SINE Alu -19 131 8 1 1436 440 325 38 0 chr9 111553698 111553855 -12522317 - RSINE1 SINE B4 0 165 3 1 1436 506 178 144 99 chr9 111555038 111555050 -12521122 - B3A SINE B2 -6 192 183 1 1436 315 0 0 0 chr9 111555050 111555085 -12521087 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1436 506 178 144 99 chr9 111555085 111555253 -12520919 - B3A SINE B2 -16 182 5 1 1436 433 239 58 33 chr9 111555523 111555587 -12520585 + RSINE1 SINE B4 41 104 -61 1 1436 489 17 0 0 chr9 111555587 111555645 -12520527 + (CATGT)n Simple_repeat Simple_repeat 3 60 0 1 1436 433 239 58 33 chr9 111555645 111555701 -12520471 + RSINE1 SINE B4 105 163 -2 1 1436 335 174 12 0 chr9 111555717 111555803 -12520369 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1436 275 234 7 184 chr9 111555863 111555999 -12520173 + PB1D7 SINE Alu 1 115 -5 1 1436 512 255 49 21 chr9 111556075 111556219 -12519953 + B1F SINE Alu 1 148 -1 1 1436 189 0 0 0 chr9 111556507 111556528 -12519644 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1436 279 262 117 0 chr9 111556579 111556682 -12519490 + PB1D10 SINE Alu 1 115 -2 1 1436 201 121 0 0 chr9 111557090 111557123 -12519049 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1436 689 281 38 0 chr9 111557991 111558176 -12517996 - ID_B1 SINE B4 0 224 33 1 1436 189 323 50 43 chr9 111558834 111558973 -12517199 + L2b LINE L2 3225 3364 -11 1 1436 679 276 48 35 chr9 111559118 111559347 -12516825 + MTE2b LTR MaLR 2 233 -146 1 1436 368 250 58 79 chr9 111559381 111559475 -12516697 + RMER30 DNA MER1_type 11 98 -104 1 1436 279 0 0 0 chr9 111559475 111559506 -12516666 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1436 368 250 58 79 chr9 111559506 111559550 -12516622 + RMER30 DNA MER1_type 99 146 -56 1 1436 215 336 42 14 chr9 111559575 111559717 -12516455 - L2 LINE L2 -730 2689 2544 1 1436 1120 89 0 14 chr9 111560350 111560498 -12515674 - B1_Mus1 SINE Alu -1 147 2 1 1436 207 139 0 0 chr9 111562412 111562448 -12513724 + (CAT)n Simple_repeat Simple_repeat 3 38 0 1 1436 242 327 40 0 chr9 111562658 111562759 -12513413 - MLT1L LTR MaLR -89 521 417 1 1436 388 312 86 12 chr9 111562818 111562980 -12513192 - MLT1L LTR MaLR -307 303 130 1 1436 253 247 52 31 chr9 111563192 111563288 -12512884 + MLT1E LTR MaLR 60 157 -523 1 1436 440 312 74 40 chr9 111563321 111563643 -12512529 + MLT1E LTR MaLR 275 621 -32 1 1436 936 171 54 14 chr9 111563700 111563899 -12512273 - ORR1C2 LTR MaLR 0 384 180 1 1436 504 32 0 0 chr9 111563899 111563961 -12512211 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1436 867 186 51 56 chr9 111563961 111563977 -12512195 - ORR1C2 LTR MaLR -199 179 164 1 1436 187 198 47 0 chr9 111563977 111564063 -12512109 + (CAGAGA)n Simple_repeat Simple_repeat 3 92 0 1 1436 936 183 11 6 chr9 111564068 111564249 -12511923 - ORR1C2 LTR MaLR -190 194 13 1 1436 16581 21 4 0 chr9 111564249 111566799 -12509373 - L1Md_T LINE L1 -2 6580 4015 1 1436 621 267 8 0 chr9 111566825 111566956 -12509216 - B1_Mur1 SINE Alu -15 134 3 1 1436 2971 78 30 0 chr9 111567424 111567819 -12508353 + MTB_Mm LTR MaLR 1 407 0 1 1436 487 227 7 7 chr9 111568363 111568375 -12507797 + polypyrimidine Low_complexity Low_complexity 133 144 0 1 1436 1032 185 3 3 chr9 111568375 111568684 -12507488 + CT-rich Low_complexity Low_complexity 1 309 0 1 1436 24 0 0 0 chr9 111568746 111568770 -12507402 + AT_rich Low_complexity Low_complexity 1 24 0 1 1436 249 219 13 27 chr9 111569503 111569578 -12506594 + CT-rich Low_complexity Low_complexity 1 74 0 1 1436 2780 37 0 0 chr9 111569916 111570240 -12505932 + L1Md_F2 LINE L1 5263 5586 -297 1 1436 8165 47 1 14 chr9 111570240 111571249 -12504923 + L1Md_F2 LINE L1 5587 6582 0 1 1436 236 392 15 15 chr9 111571380 111571512 -12504660 + MER45A DNA Tip100 38 169 -9 1 1436 540 0 0 0 chr9 111571642 111571702 -12504470 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1436 540 0 0 0 chr9 111572193 111572253 -12503919 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1436 195 200 19 58 chr9 111573003 111573157 -12503015 + (CATA)n Simple_repeat Simple_repeat 3 150 0 1 1436 378 179 18 41 chr9 111573173 111573342 -12502830 + (CATA)n Simple_repeat Simple_repeat 2 166 0 1 1436 300 27 0 0 chr9 111573413 111573450 -12502722 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1436 675 210 43 110 chr9 111573846 111574055 -12502117 - B3A SINE B2 -3 195 1 1 1436 565 259 121 19 chr9 111574632 111574750 -12501422 + B4A SINE B4 1 124 -168 1 1436 432 0 0 0 chr9 111574750 111574798 -12501374 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1436 565 259 121 19 chr9 111574798 111574935 -12501237 + B4A SINE B4 125 281 -11 1 1436 401 283 25 82 chr9 111575574 111575732 -12500440 + B4 SINE B4 7 155 -137 1 1436 287 282 99 47 chr9 111578116 111578369 -12497803 + L1M5 LINE L1 3622 3887 -2259 1 1436 195 161 97 97 chr9 111579010 111579072 -12497100 - MIRb SINE MIR -193 75 14 1 1436 490 170 36 15 chr9 111579109 111579246 -12496926 + CT-rich Low_complexity Low_complexity 2 141 0 1 1436 359 349 56 42 chr9 111579298 111579585 -12496587 - B4A SINE B4 0 292 2 1 1436 268 269 200 8 chr9 111579902 111580022 -12496150 - L1MA9 LINE L1 -388 5924 5782 1 1436 452 335 74 19 chr9 111580177 111580502 -12495670 + MLT1A0 LTR MaLR 21 363 -2 1 1436 23 0 0 0 chr9 111580523 111580546 -12495626 + AT_rich Low_complexity Low_complexity 1 23 0 1 1436 263 188 152 30 chr9 111580886 111580985 -12495187 + L1MA6 LINE L1 6059 6169 -131 1 1436 865 215 0 49 chr9 111581217 111581422 -12494750 - B3A SINE B2 -3 195 1 1 1436 224 345 0 22 chr9 111582076 111582165 -12494007 + CT-rich Low_complexity Low_complexity 4 90 0 1 1436 322 280 28 0 chr9 111582274 111582381 -12493791 + L1MB3 LINE L1 5284 5393 -787 1 1436 441 316 81 111 chr9 111582395 111582570 -12493602 + L1MB3 LINE L1 5622 5793 -390 1 1436 759 78 0 0 chr9 111582570 111582673 -12493499 + (TA)n Simple_repeat Simple_repeat 2 104 0 1 1436 441 316 81 111 chr9 111582673 111583066 -12493106 + L1MB3 LINE L1 5794 6173 -10 1 1436 1436 230 22 3 chr9 111583071 111583385 -12492787 - MTD LTR MaLR -69 350 31 1 1436 258 333 9 27 chr9 111583577 111583688 -12492484 + L1MEd LINE L1 467 575 -5561 1 1436 254 331 68 31 chr9 111583791 111583953 -12492219 + L1MEd LINE L1 4574 4741 -1405 1 1436 263 293 51 8 chr9 111584149 111584266 -12491906 + L1M5 LINE L1 5049 5170 -976 1 1436 297 0 0 0 chr9 111584336 111584369 -12491803 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1436 336 277 67 30 chr9 111584378 111584512 -12491660 + L1M5 LINE L1 5635 5773 -400 1 1436 798 122 0 48 chr9 111585665 111585811 -12490361 + B1_Mur3 SINE Alu 11 149 0 1 1436 510 70 0 0 chr9 111585813 111585884 -12490288 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1 1436 335 269 138 9 chr9 111586476 111586592 -12489580 + B1_Mur1 SINE Alu 1 131 -18 1 1436 1010 270 132 9 chr9 111586720 111587060 -12489112 - MTD LTR MaLR -20 399 18 1 1436 209 271 103 23 chr9 111587103 111587190 -12488982 - MIRb SINE MIR -161 107 14 1 1436 251 308 9 63 chr9 111587845 111588067 -12488105 + L1MC5 LINE L1 7705 7914 -47 1 1436 333 279 0 0 chr9 111588461 111588540 -12487632 - ID4_ SINE ID -3 80 2 1 1436 918 287 11 32 chr9 111588626 111588903 -12487269 - B4 SINE B4 -20 272 2 1 1436 648 38 0 0 chr9 111588907 111588986 -12487186 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 1 1436 706 178 96 0 chr9 111589001 111589136 -12487036 - B1_Mus1 SINE Alu 0 148 1 1 1436 586 261 0 48 chr9 111589166 111589311 -12486861 + RSINE1 SINE B4 13 150 -15 1 1436 669 279 6 6 chr9 111590047 111590209 -12485963 + RSINE1 SINE B4 3 164 -1 1 1436 312 304 163 0 chr9 111593278 111593413 -12482759 - MIRb SINE MIR -72 196 40 1 1436 214 320 0 51 chr9 111593800 111593879 -12482293 + B1F SINE Alu 15 89 -60 1 1436 228 348 0 33 chr9 111593821 111593913 -12482259 + ID_B1 SINE B4 113 201 -23 1 1436 426 202 0 45 chr9 111593884 111593972 -12482200 + B1F SINE Alu 66 149 0 1 1436 448 140 21 0 chr9 111594298 111594391 -12481781 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 1 1436 928 245 46 93 chr9 111595129 111595400 -12480772 + B4 SINE B4 5 269 -23 1 1436 1172 101 6 0 chr9 111595400 111595578 -12480594 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1436 928 245 46 93 chr9 111595578 111595608 -12480564 + B4 SINE B4 270 292 0 1 1436 342 115 0 0 chr9 111595609 111595661 -12480511 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1436 222 37 0 0 chr9 111595661 111595688 -12480484 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1436 8430 38 1 5 chr9 111595760 111596757 -12479415 - L1Md_F2 LINE L1 -2 6580 5588 1 1436 1470 250 56 18 chr9 111597234 111597629 -12478543 - MTD LTR MaLR 0 419 10 1 1436 1695 236 8 6 chr9 111598031 111598393 -12477779 + MTD LTR MaLR 1 363 -56 1 1436 218 278 0 40 chr9 111598787 111598862 -12477310 + MIRb SINE MIR 118 189 -79 1 1436 421 280 44 6 chr9 111598904 111599062 -12477110 + HAL1-2a_MD LINE L1 2345 2508 -516 1 1436 1715 292 74 34 chr9 111599526 111600172 -12476000 + Lx8 LINE L1 6765 7436 -37 1 1436 198 0 0 0 chr9 111601169 111601191 -12474981 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1436 1509 138 145 0 chr9 111601191 111601487 -12474685 - ORR1B2 LTR MaLR -14 353 15 1 1436 528 273 0 0 chr9 111601491 111601678 -12474494 + CT-rich Low_complexity Low_complexity 1 187 0 1 1436 961 242 48 24 chr9 111601707 111601957 -12474215 - B4 SINE B4 0 292 37 1 1436 297 140 0 0 chr9 111601967 111602024 -12474148 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1436 530 160 8 0 chr9 111602023 111602154 -12474018 + GA-rich Low_complexity Low_complexity 2 133 0 1 1436 2995 28 2 118 chr9 111603596 111604037 -12472135 + RLTR10 LTR ERVK 1 390 0 2 1436 8151 40 2 2 chr9 111604047 111605005 -12471167 + RLTR10-int LTR ERVK 41 998 -989 2 1436 351 264 63 16 chr9 111605069 111605196 -12470976 + RLTR10-int LTR ERVK 1462 1594 -5987 2 1436 8802 23 1 9 chr9 111605278 111606281 -12469891 + RLTR10-int LTR ERVK 990 1984 -3 2 1436 3144 31 2 44 chr9 111606283 111606690 -12469482 + RLTR10 LTR ERVK 1 390 0 2 1436 635 234 65 6 chr9 111607164 111607332 -12468840 + RMER15 LTR ERVL 398 575 0 2 1436 523 215 6 49 chr9 111607451 111607595 -12468577 + MTD LTR MaLR 238 397 -22 2 1436 289 281 9 86 chr9 111607715 111607820 -12468352 + ID_B1 SINE B4 55 151 -73 2 1436 931 322 75 49 chr9 111608038 111608936 -12467236 + L1MDa LINE L1 1047 1956 -4677 2 1436 996 319 33 8 chr9 111608936 111609303 -12466869 + MTEb LTR MaLR 1 376 -3 2 1436 931 322 75 49 chr9 111609303 111609463 -12466709 + L1MDa LINE L1 1957 2133 -4500 2 1436 403 282 92 0 chr9 111609476 111609607 -12466565 - ID_B1 SINE B4 -2 222 80 2 1436 273 296 22 43 chr9 111609607 111609745 -12466427 + L1MDa LINE L1 2121 2255 -4378 2 1436 852 244 29 5 chr9 111609906 111610112 -12466060 + B3 SINE B2 1 211 -5 2 1436 457 270 103 45 chr9 111610231 111610651 -12465521 + L1MD1 LINE L1 5219 5674 -685 2 1436 958 270 90 19 chr9 111610674 111611052 -12465120 + MTD LTR MaLR 1 405 -14 2 1436 465 272 23 29 chr9 111611175 111611349 -12464823 + L1MD1 LINE L1 5864 6036 -206 2 1436 21 82 0 0 chr9 111611407 111611456 -12464716 + AT_rich Low_complexity Low_complexity 1 49 0 2 1436 616 339 108 44 chr9 111612171 111612331 -12463841 + L1MCb LINE L1 239 412 -5633 2 1436 414 0 0 0 chr9 111612331 111612377 -12463795 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1436 616 339 108 44 chr9 111612377 111612883 -12463289 + L1MCb LINE L1 413 939 -5106 2 1436 243 0 0 0 chr9 111612883 111612910 -12463262 + (CAA)n Simple_repeat Simple_repeat 3 29 0 2 1436 616 339 108 44 chr9 111612910 111613057 -12463115 + L1MCb LINE L1 940 1104 -4941 2 1436 261 0 0 0 chr9 111613130 111613159 -12463013 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1436 1519 257 51 78 chr9 111613298 111613930 -12462242 + L1_Mur3 LINE L1 3901 4515 -1365 2 1436 219 44 67 0 chr9 111613931 111613976 -12462196 + (TATAA)n Simple_repeat Simple_repeat 5 52 0 2 1436 331 242 22 3 chr9 111613981 111614115 -12462057 + L1_Mur3 LINE L1 4503 4669 -1474 2 1436 442 68 33 22 chr9 111614180 111614270 -12461902 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 2 1436 357 24 0 0 chr9 111615356 111615398 -12460774 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 2 1436 508 258 16 31 chr9 111615425 111615553 -12460619 - RSINE1 SINE B4 -25 140 15 2 1436 999 103 0 0 chr9 111615613 111615759 -12460413 + (TC)n Simple_repeat Simple_repeat 1 146 0 2 1436 359 268 167 77 chr9 111615890 111616112 -12460060 - B4 SINE B4 -11 281 40 2 1436 184 296 41 27 chr9 111616795 111616868 -12459304 - MIRc SINE MIR -113 155 82 2 1436 182 150 25 0 chr9 111618366 111618406 -12457766 + GA-rich Low_complexity Low_complexity 2 42 0 2 1436 225 143 48 0 chr9 111618637 111618679 -12457493 + ID_B1 SINE B4 177 220 -4 2 1436 303 28 0 0 chr9 111618975 111619011 -12457161 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1436 755 50 0 10 chr9 111619013 111619114 -12457058 + (GGA)n Simple_repeat Simple_repeat 3 102 0 2 1436 604 285 151 55 chr9 111620127 111620257 -12455915 - MTEa LTR MaLR -37 342 212 2 1436 387 0 0 0 chr9 111620257 111620300 -12455872 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1436 414 0 0 0 chr9 111620300 111620345 -12455827 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1436 604 285 151 55 chr9 111620345 111620525 -12455647 - MTEa LTR MaLR -168 211 2 2 1436 432 0 0 0 chr9 111620641 111620689 -12455483 + (TAA)n Simple_repeat Simple_repeat 3 50 0 2 1436 986 255 19 0 chr9 111622164 111622376 -12453796 - B3 SINE B2 0 216 1 2 1436 391 250 45 0 chr9 111622538 111622650 -12453522 + B4A SINE B4 3 119 -173 2 1436 651 130 0 0 chr9 111622919 111623042 -12453130 + (TC)n Simple_repeat Simple_repeat 2 124 0 2 1436 583 263 32 58 chr9 111623048 111623238 -12452934 - B4A SINE B4 -43 249 65 2 1436 252 0 0 0 chr9 111624260 111624288 -12451884 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1436 255 133 0 0 chr9 111624601 111624646 -12451526 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 2 1436 216 0 0 0 chr9 111624784 111624808 -12451364 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2 1436 516 252 147 28 chr9 111625742 111625925 -12450247 - B3A SINE B2 -7 188 1 2 1436 5620 115 30 25 chr9 111626434 111627352 -12448820 + Lx3C LINE L1 6054 6976 0 2 1436 233 75 25 0 chr9 111627352 111627392 -12448780 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 2 1436 1826 202 11 16 chr9 111629056 111629429 -12446743 - ORR1D1 LTR MaLR 0 374 4 2 1436 477 0 0 0 chr9 111629924 111629977 -12446195 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1436 690 91 0 0 chr9 111630321 111630420 -12445752 + (GGGA)n Simple_repeat Simple_repeat 3 101 0 2 1436 589 334 77 38 chr9 111630948 111631599 -12444573 + L1M4b LINE L1 1151 1826 -5508 2 1436 456 283 212 19 chr9 111631700 111632111 -12444061 + L1M4b LINE L1 1986 2475 -4859 2 1436 350 329 54 20 chr9 111632126 111632275 -12443897 + B3 SINE B2 38 191 -25 2 1436 21 0 0 0 chr9 111632293 111632314 -12443858 + AT_rich Low_complexity Low_complexity 1 21 0 2 1436 784 269 146 4 chr9 111632341 111633015 -12443157 + L1M4b LINE L1 2966 3438 -3568 2 1436 338 256 110 16 chr9 111633280 111633407 -12442765 - B1F1 SINE Alu -9 140 2 2 1436 218 367 35 14 chr9 111633587 111633728 -12442444 + MIRc SINE MIR 17 160 -108 2 1436 189 0 0 0 chr9 111633978 111633999 -12442173 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1436 464 0 18 0 chr9 111634042 111634098 -12442074 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1436 182 294 59 0 chr9 111634776 111634827 -12441345 - L2a LINE L2 -306 3120 3067 2 1436 667 246 78 124 chr9 111634961 111635071 -12441101 - ORR1E LTR MaLR -4 375 241 2 1436 2862 176 38 7 chr9 111635071 111635621 -12440551 + RLTR12A LTR ERVK 2 568 0 2 1436 667 260 95 61 chr9 111635621 111635843 -12440329 - ORR1E LTR MaLR -119 240 3 2 1436 198 174 0 0 chr9 111636261 111636307 -12439865 + T-rich Low_complexity Low_complexity 1 46 0 2 1436 3933 150 117 34 chr9 111636486 111637309 -12438863 - RMER19B LTR ERVK -11 891 1 2 1436 774 237 13 0 chr9 111637587 111637739 -12438433 + RSINE1 SINE B4 2 155 -10 2 1436 321 89 0 0 chr9 111637748 111637793 -12438379 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1436 641 36 12 0 chr9 111637793 111637876 -12438296 + (GA)n Simple_repeat Simple_repeat 2 86 0 2 1436 186 133 0 0 chr9 111638777 111638807 -12437365 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 2 1436 320 325 34 8 chr9 111638815 111638933 -12437239 - ID_B1 SINE B4 -2 222 102 2 1436 374 211 127 24 chr9 111639731 111639857 -12436315 + MTD LTR MaLR 242 380 -39 2 1436 207 69 0 0 chr9 111640069 111640098 -12436074 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1436 652 335 64 22 chr9 111640282 111640593 -12435579 - MLT2B2 LTR ERVL -191 324 1 2 1436 461 17 0 17 chr9 111641245 111641304 -12434868 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1436 812 206 103 5 chr9 111641555 111641750 -12434422 - B3 SINE B2 0 216 3 2 1436 753 290 85 17 chr9 111642600 111642895 -12433277 + ORR1E LTR MaLR 4 318 -41 2 1436 27 0 0 0 chr9 111644060 111644087 -12432085 + AT_rich Low_complexity Low_complexity 1 27 0 2 1436 684 149 9 0 chr9 111644242 111644356 -12431816 + B1_Mur1 SINE Alu 32 146 -3 2 1436 826 267 89 15 chr9 111644754 111645013 -12431159 - B4A SINE B4 -14 278 1 2 1436 225 154 0 0 chr9 111645033 111645072 -12431100 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1436 743 242 6 18 chr9 111645660 111645824 -12430348 + RSINE1 SINE B4 4 165 0 2 1436 455 289 100 41 chr9 111645856 111646127 -12430045 - L1ME3A LINE L1 -56 6117 5831 2 1436 1086 263 4 171 chr9 111646263 111646675 -12429497 - MTE2a LTR MaLR 0 379 43 2 1436 1189 168 56 5 chr9 111646675 111646890 -12429282 + URR1A DNA MER1_type 1 226 0 2 1436 1086 263 4 171 chr9 111646890 111646932 -12429240 - MTE2a LTR MaLR -337 42 1 2 1436 2495 92 6 3 chr9 111647166 111647492 -12428680 - ORR1A2 LTR MaLR 0 327 1 2 1436 491 289 22 7 chr9 111647599 111647735 -12428437 - B4A SINE B4 -154 138 1 2 1436 298 286 52 22 chr9 111648744 111648880 -12427292 + MLT1H LTR MaLR 75 214 -335 2 1436 251 190 225 12 chr9 111649581 111649661 -12426511 - B1F SINE Alu -50 99 3 2 1436 539 254 0 42 chr9 111649661 111649747 -12426425 - ID SINE ID -142 82 3 2 1436 612 0 0 0 chr9 111650487 111650555 -12425617 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1436 678 293 11 32 chr9 111650559 111650746 -12425426 + B3 SINE B2 30 212 -4 2 1436 354 107 0 0 chr9 111650754 111650810 -12425362 + (GGGA)n Simple_repeat Simple_repeat 4 59 0 2 1436 281 309 56 16 chr9 111651592 111651721 -12424451 + MamGypLTR1a LTR Gypsy 434 587 -216 2 1436 324 48 0 0 chr9 111652907 111652949 -12423223 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1436 1075 316 52 43 chr9 111652998 111653513 -12422659 - MT2A LTR ERVL -10 523 4 2 1436 1875 163 35 30 chr9 111653521 111653887 -12422285 - ORR1D1 LTR MaLR -2 372 5 2 1436 547 254 8 0 chr9 111654261 111654395 -12421777 - B3A SINE B2 -30 168 34 2 1436 1569 117 140 3 chr9 111654396 111654688 -12421484 + IAPEY3_LTR LTR ERVK 1 332 0 2 1436 1959 92 3 69 chr9 111654956 111655305 -12420867 + IAPLTR1a_Mm LTR ERVK 1 326 -11 2 1436 21 36 0 0 chr9 111655868 111655896 -12420276 + AT_rich Low_complexity Low_complexity 1 28 0 2 1436 1009 257 38 3 chr9 111656199 111656492 -12419680 - MTEa LTR MaLR -76 303 1 2 1436 347 326 0 72 chr9 111656583 111656722 -12419450 + B1F SINE Alu 11 139 -10 2 1436 213 194 0 0 chr9 111656727 111656763 -12419409 + (CAG)n Simple_repeat Simple_repeat 1 36 0 2 1436 367 241 0 24 chr9 111656852 111656937 -12419235 + ID4 SINE ID 1 83 0 2 1436 753 177 90 14 chr9 111657327 111657539 -12418633 + Lx9 LINE L1 7409 7636 -8 2 1436 930 116 0 0 chr9 111657546 111657780 -12418392 + (GA)n Simple_repeat Simple_repeat 1 234 0 2 1436 275 360 11 0 chr9 111658361 111658450 -12417722 - PB1D10 SINE Alu -7 110 21 2 1436 830 238 51 20 chr9 111660042 111660239 -12415933 + B3 SINE B2 4 206 -10 2 1436 797 262 40 80 chr9 111661889 111662188 -12413984 + B4 SINE B4 2 288 -4 3 1436 21 0 0 0 chr9 111662786 111662807 -12413365 + AT_rich Low_complexity Low_complexity 1 21 0 3 1436 658 302 44 22 chr9 111663322 111663593 -12412579 + B4A SINE B4 2 278 -14 3 1436 548 278 91 149 chr9 111664321 111664386 -12411786 - B4A SINE B4 0 292 218 3 1436 405 0 0 0 chr9 111664386 111664431 -12411741 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1436 548 278 91 149 chr9 111664431 111664674 -12411498 - B4A SINE B4 -75 217 2 3 1436 945 287 56 47 chr9 111666462 111666802 -12409370 + MTE2a LTR MaLR 7 349 -30 3 1436 742 130 7 51 chr9 111666799 111666937 -12409235 - B1_Mur3 SINE Alu 0 149 18 3 1436 5878 81 18 1 chr9 111667073 111667868 -12408304 - L1_Mus4 LINE L1 -2 6634 5827 3 1436 6432 136 13 24 chr9 111667872 111668901 -12407271 + L1_Mus4 LINE L1 4807 5823 -60 3 1436 531 200 89 37 chr9 111668906 111669041 -12407131 - B1F SINE Alu -7 142 1 3 1436 391 338 14 42 chr9 111669068 111669210 -12406962 + RSINE1 SINE B4 3 140 -25 3 1436 478 0 32 0 chr9 111669237 111669299 -12406873 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1436 2187 118 14 91 chr9 111669551 111669969 -12406203 + ORR1B1 LTR MaLR 1 386 -8 3 1436 294 233 116 0 chr9 111670027 111670113 -12406059 - PB1D10 SINE Alu -1 116 21 3 1436 1924 107 141 31 chr9 111671053 111671380 -12404792 - ORR1B2 LTR MaLR -4 363 1 3 1436 735 112 26 0 chr9 111672897 111673013 -12403159 + B1_Mm SINE Alu 29 147 0 3 1436 260 45 68 0 chr9 111673013 111673057 -12403115 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 3 1437 282 46 44 44 chr9 111673982 111674050 -12402122 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 3 1437 342 0 0 0 chr9 111674563 111674601 -12401571 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1437 663 13 0 0 chr9 111674601 111674676 -12401496 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1437 570 29 0 0 chr9 111676294 111676362 -12399810 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 3 1437 792 103 0 0 chr9 111676517 111676633 -12399539 + (CATATA)n Simple_repeat Simple_repeat 6 121 0 3 1437 219 36 0 0 chr9 111676633 111676661 -12399511 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1437 870 295 59 35 chr9 111676687 111677091 -12399081 - L1_Rod LINE L1 0 5847 5434 3 1437 446 279 0 0 chr9 111677703 111677814 -12398358 - RSINE1 SINE B4 -2 163 53 3 1437 262 315 141 40 chr9 111677824 111678251 -12397921 - L1M5 LINE L1 -928 5218 4749 3 1437 271 316 32 13 chr9 111678555 111678709 -12397463 - L1M5 LINE L1 -1539 4607 4451 3 1437 549 0 0 0 chr9 111678872 111678933 -12397239 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 3 1437 223 191 0 31 chr9 111679486 111679551 -12396621 + GA-rich Low_complexity Low_complexity 4 66 0 3 1437 513 0 0 0 chr9 111679740 111679797 -12396375 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 1437 870 278 41 65 chr9 111679932 111680347 -12395825 - MTD LTR MaLR -14 405 1 3 1437 21 0 0 0 chr9 111681159 111681180 -12394992 + AT_rich Low_complexity Low_complexity 1 21 0 3 1437 315 0 0 0 chr9 111682003 111682038 -12394134 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1437 196 306 56 16 chr9 111682074 111682200 -12393972 - L2a LINE L2 -69 3357 3227 3 1437 240 244 0 0 chr9 111682791 111682836 -12393336 + polypyrimidine Low_complexity Low_complexity 1 45 0 3 1437 713 193 7 41 chr9 111682841 111682987 -12393185 - B1_Mus2 SINE Alu -2 145 5 3 1437 451 277 58 89 chr9 111682987 111683026 -12393146 - B4 SINE B4 -63 224 46 3 1437 1398 21 225 0 chr9 111683421 111683608 -12392564 - L1Md_F2 LINE L1 0 6582 6354 3 1437 3932 41 2 17 chr9 111683608 111684082 -12392090 + L1Md_F2 LINE L1 5877 6343 -239 3 1437 730 277 151 28 chr9 111684632 111684951 -12391221 + ORR1E LTR MaLR 1 358 -1 3 1437 3116 52 31 3 chr9 111685440 111685824 -12390348 - MTA_Mm LTR MaLR 0 396 2 3 1437 492 18 0 0 chr9 111685872 111685929 -12390243 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1437 497 236 0 3 chr9 111686378 111686484 -12389688 + PB1D7 SINE Alu 7 112 -8 3 1437 341 250 57 19 chr9 111686496 111686602 -12389570 - B1F2 SINE Alu -13 136 27 3 1437 553 228 190 0 chr9 111686523 111686681 -12389491 - ID_B1 SINE B4 -35 189 2 3 1437 363 275 83 48 chr9 111687427 111687595 -12388577 - ORR1E LTR MaLR -162 197 24 3 1437 807 257 132 36 chr9 111688181 111688431 -12387741 + B4A SINE B4 1 274 -18 3 1437 1569 187 57 11 chr9 111689107 111689474 -12386698 + ORR1C2 LTR MaLR 1 384 0 3 1437 648 223 120 21 chr9 111689614 111689806 -12386366 + B3 SINE B2 1 211 -5 3 1437 2658 42 0 38 chr9 111690000 111690316 -12385856 - IAPEY2_LTR LTR ERVK -3 354 53 3 1437 2365 32 11 3 chr9 111690316 111690600 -12385572 - L1Md_F3 LINE L1 -15 6569 6284 3 1437 2658 42 0 38 chr9 111690600 111690651 -12385521 - IAPEY2_LTR LTR ERVK -305 52 2 3 1437 353 262 0 12 chr9 111690652 111690733 -12385439 + B1F SINE Alu 59 138 -11 3 1437 334 267 66 11 chr9 111690849 111690940 -12385232 - PB1D7 SINE Alu -13 107 12 3 1437 632 253 88 27 chr9 111692000 111692296 -12383876 - MER33 DNA MER1_type -6 318 5 3 1437 473 259 0 9 chr9 111693042 111693151 -12383021 - PB1D10 SINE Alu -7 110 3 3 1437 186 43 0 0 chr9 111693157 111693180 -12382992 + (TATG)n Simple_repeat Simple_repeat 3 25 0 3 1437 2236 188 39 10 chr9 111693452 111693861 -12382311 - MTC LTR MaLR 0 421 1 3 1437 461 202 26 52 chr9 111693887 111694002 -12382170 - PB1D10 SINE Alu -2 115 4 3 1437 198 71 0 0 chr9 111695045 111695073 -12381099 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1437 459 0 0 0 chr9 111695115 111695166 -12381006 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1437 213 286 0 0 chr9 111695166 111695222 -12380950 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1437 471 63 0 0 chr9 111695283 111695346 -12380826 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1437 303 306 76 104 chr9 111695393 111695681 -12380491 - B4A SINE B4 -12 280 1 3 1437 534 221 0 55 chr9 111696176 111696209 -12379963 + RSINE1 SINE B4 3 30 -135 3 1437 1340 203 63 93 chr9 111696209 111696605 -12379567 - ORR1C2 LTR MaLR 0 384 1 3 1437 534 221 0 55 chr9 111696605 111696681 -12379491 + RSINE1 SINE B4 31 106 -59 3 1437 587 304 57 23 chr9 111697366 111697629 -12378543 + MLT1B LTR MaLR 119 390 0 3 1437 488 327 67 24 chr9 111698016 111698270 -12377902 + Lx8 LINE L1 6651 6915 -558 3 1437 546 245 181 92 chr9 111698316 111698608 -12377564 + Lx8 LINE L1 7015 7332 -141 3 1437 228 280 38 48 chr9 111698880 111698985 -12377187 - L1ME3A LINE L1 -203 5970 5867 3 1437 246 194 0 0 chr9 111699960 111700027 -12376145 + T-rich Low_complexity Low_complexity 1 67 0 3 1437 290 317 99 0 chr9 111700167 111700328 -12375844 - LTR16A1 LTR ERVL -15 441 265 3 1437 2687 169 114 18 chr9 111701893 111702058 -12374114 - Lx9 LINE L1 -1 7643 7418 3 1437 420 20 0 0 chr9 111702058 111702107 -12374065 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1437 2687 169 114 18 chr9 111702107 111702509 -12373663 - Lx9 LINE L1 -227 7417 7021 3 1437 230 316 9 17 chr9 111702582 111702698 -12373474 - L1M2 LINE L1 -4828 2021 1907 3 1437 26 30 0 0 chr9 111702866 111702899 -12373273 + AT_rich Low_complexity Low_complexity 1 33 0 3 1437 1011 230 14 0 chr9 111702902 111703111 -12373061 - B3 SINE B2 -4 212 1 3 1437 1021 253 32 14 chr9 111703989 111704251 -12371921 + B4 SINE B4 2 270 -22 3 1437 408 40 0 0 chr9 111704251 111704301 -12371871 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1437 279 0 0 0 chr9 111704301 111704331 -12371841 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1437 1021 253 32 14 chr9 111704331 111704348 -12371824 + B4 SINE B4 271 286 -6 3 1437 671 228 199 20 chr9 111704653 111704904 -12371268 + ORR1E LTR MaLR 60 355 -4 3 1437 822 234 5 55 chr9 111704982 111705181 -12370991 + B3 SINE B2 1 189 -27 3 1437 552 42 0 0 chr9 111705446 111705517 -12370655 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1437 451 101 25 0 chr9 111705520 111705599 -12370573 + (AGGGGG)n Simple_repeat Simple_repeat 1 81 0 3 1437 684 289 69 55 chr9 111706669 111707017 -12369155 + ORR1E LTR MaLR 1 353 -6 3 1437 585 326 75 43 chr9 111707055 111707308 -12368864 + B4 SINE B4 2 262 -30 3 1437 378 0 0 0 chr9 111707348 111707390 -12368782 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1437 39393 4 0 0 chr9 111707825 111713387 -12362785 + L1Md_A LINE L1 25 5586 -297 3 1437 9160 5 0 0 chr9 111713387 111714383 -12361789 + L1Md_A LINE L1 5587 6582 0 3 1437 435 92 0 0 chr9 111715281 111715346 -12360826 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1437 499 208 113 117 chr9 111716244 111716457 -12359715 + MTD LTR MaLR 3 214 -205 3 1437 311 353 59 0 chr9 111716464 111716600 -12359572 + LTR16A LTR ERVL 68 211 -240 3 1437 847 300 62 61 chr9 111717834 111718590 -12357582 + L1MD LINE L1 2249 3005 -3141 3 1437 348 311 76 58 chr9 111718715 111719088 -12357084 - MLT1C LTR MaLR -25 442 11 3 1437 240 213 0 47 chr9 111719116 111719180 -12356992 + L1M4 LINE L1 3042 3102 -3044 3 1437 1013 264 30 76 chr9 111719448 111719765 -12356407 + MTEa LTR MaLR 1 309 -70 3 1437 234 0 0 0 chr9 111719765 111719791 -12356381 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1437 1013 264 30 76 chr9 111719791 111719867 -12356305 + MTEa LTR MaLR 310 376 -3 3 1437 465 66 0 0 chr9 111719937 111719998 -12356174 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 3 1437 739 82 9 0 chr9 111720223 111720333 -12355839 - B1_Mus1 SINE Alu 0 148 38 3 1437 326 319 108 8 chr9 111721364 111721484 -12354688 - B3A SINE B2 -17 181 50 3 1437 1305 184 63 7 chr9 111721520 111721804 -12354368 - Lx9 LINE L1 -4 7640 7341 3 1437 602 304 0 0 chr9 111721945 111722093 -12354079 + B3A SINE B2 6 153 -45 3 1437 31 82 0 0 chr9 111722194 111722267 -12353905 + AT_rich Low_complexity Low_complexity 1 73 0 3 1437 213 231 19 19 chr9 111723481 111723534 -12352638 + CT-rich Low_complexity Low_complexity 2 54 0 3 1437 295 69 17 33 chr9 111723676 111723736 -12352436 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 3 1437 1984 200 25 3 chr9 111724120 111724486 -12351686 + ORR1D1 LTR MaLR 1 374 0 3 1437 287 228 106 29 chr9 111724757 111724861 -12351311 - MER5A1 DNA MER1_type -35 131 20 3 1437 331 300 25 0 chr9 111725292 111725372 -12350800 - BC1_Mm scRNA scRNA -70 82 1 4 1437 266 256 0 68 chr9 111725487 111725575 -12350597 - MIRm SINE MIR -132 144 63 4 1437 229 206 26 11 chr9 111726917 111726993 -12349179 - MIR SINE MIR -92 176 102 4 1437 487 302 155 25 chr9 111727168 111727431 -12348741 + MLT1A0 LTR MaLR 1 302 -63 4 1437 537 16 0 0 chr9 111727431 111727493 -12348679 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1437 487 302 155 25 chr9 111727493 111727552 -12348620 + MLT1A0 LTR MaLR 303 364 -1 4 1437 2480 220 83 13 chr9 111727849 111728033 -12348139 - Lx9 LINE L1 0 7644 7418 4 1437 393 102 0 0 chr9 111728033 111728092 -12348080 + (TATG)n Simple_repeat Simple_repeat 4 62 0 4 1437 2480 220 83 13 chr9 111728092 111728524 -12347648 - Lx9 LINE L1 -227 7417 6985 4 1437 303 367 43 43 chr9 111729196 111729384 -12346788 - L1MC3 LINE L1 -1079 6706 6518 4 1437 1974 161 77 6 chr9 111729384 111729733 -12346439 - ORR1D1 LTR MaLR 0 374 1 4 1437 303 367 43 43 chr9 111729733 111729752 -12346420 - L1MC3 LINE L1 -1268 6517 6499 4 1437 7542 100 22 13 chr9 111729768 111731161 -12345011 + Lx LINE L1 5247 6649 -5 4 1437 293 325 40 16 chr9 111731265 111731390 -12344782 - L1MCb LINE L1 -5596 449 322 4 1437 7723 27 2 3 chr9 111731692 111732557 -12343615 + L1Md_F3 LINE L1 5720 6583 -1 4 1437 347 324 21 21 chr9 111732808 111732959 -12343213 - L1M5 LINE L1 -2438 3708 3558 4 1437 1269 48 7 0 chr9 111733214 111733360 -12342812 + B1_Mus1 SINE Alu 2 148 0 4 1437 498 49 37 0 chr9 111733360 111733442 -12342730 + (CAAAAA)n Simple_repeat Simple_repeat 6 90 0 4 1437 23 0 0 0 chr9 111733743 111733766 -12342406 + AT_rich Low_complexity Low_complexity 1 23 0 4 1437 572 359 7 7 chr9 111734039 111734193 -12341979 - RSINE1 SINE B4 -9 156 3 4 1437 776 178 0 22 chr9 111734210 111734394 -12341778 + CT-rich Low_complexity Low_complexity 1 180 0 4 1437 254 164 0 18 chr9 111734407 111734463 -12341709 + CT-rich Low_complexity Low_complexity 3 57 0 4 1437 383 239 0 0 chr9 111734472 111734543 -12341629 - ID4 SINE ID -11 72 2 4 1437 743 310 36 65 chr9 111734915 111735163 -12341009 - B4A SINE B4 -47 245 5 4 1437 242 91 68 0 chr9 111735992 111736036 -12340136 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 4 1437 3104 157 309 24 chr9 111737065 111737765 -12338407 + RMER19B LTR ERVK 4 902 0 4 1437 832 238 11 31 chr9 111737894 111738085 -12338087 - MTE2a LTR MaLR 0 379 193 4 1437 319 284 84 115 chr9 111738460 111738651 -12337521 - MTE2a LTR MaLR -194 185 1 4 1437 718 340 47 33 chr9 111739633 111739907 -12336265 + MLT1A0 LTR MaLR 51 328 -37 4 1437 247 371 37 28 chr9 111741084 111741192 -12334980 + MER91A DNA Tip100 2 110 -86 4 1437 306 0 0 0 chr9 111741567 111741601 -12334571 + (CAACC)n Simple_repeat Simple_repeat 2 35 0 4 1437 249 33 0 0 chr9 111741601 111741631 -12334541 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 4 1437 396 0 0 0 chr9 111741629 111741673 -12334499 + (A)n Simple_repeat Simple_repeat 1 44 0 4 1437 525 310 52 63 chr9 111742167 111742453 -12333719 + B4A SINE B4 1 283 -9 4 1437 1188 78 0 0 chr9 111742668 111742809 -12333363 + B1_Mm SINE Alu 1 141 -6 4 1437 192 77 0 0 chr9 111742811 111742837 -12333335 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1437 541 242 180 0 chr9 111743072 111743200 -12332972 - RSINE1 SINE B4 -12 153 3 4 1437 409 297 29 72 chr9 111743317 111743455 -12332717 + B3A SINE B2 51 182 -16 4 1437 486 108 0 0 chr9 111744618 111744692 -12331480 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1437 783 277 118 22 chr9 111745331 111745645 -12330527 - MLT1A0 LTR MaLR -2 363 20 4 1437 783 93 0 0 chr9 111746255 111746373 -12329799 + (CA)n Simple_repeat Simple_repeat 1 118 0 4 1437 211 184 0 0 chr9 111747966 111748004 -12328168 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 4 1437 692 294 14 53 chr9 111748156 111748364 -12327808 + RMER30 DNA MER1_type 2 201 -1 4 1437 33570 74 3 0 chr9 111749085 111754236 -12321936 + L1Md_F2 LINE L1 487 5586 -297 4 1437 8702 41 2 0 chr9 111754236 111755219 -12320953 + L1Md_F2 LINE L1 5587 6571 -11 4 1437 670 274 62 96 chr9 111757123 111757414 -12318758 - B4A SINE B4 -2 290 10 4 1437 183 100 0 0 chr9 111758072 111758102 -12318070 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1437 610 267 55 0 chr9 111758382 111758528 -12317644 + RSINE1 SINE B4 6 159 -6 4 1437 186 103 0 0 chr9 111758537 111758566 -12317606 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1437 571 75 0 0 chr9 111758843 111758923 -12317249 - L1Md_F2 LINE L1 -2 6580 6501 4 1437 232 330 57 57 chr9 111759318 111759511 -12316661 - L1MCb LINE L1 -5633 412 220 4 1437 215 227 0 0 chr9 111760917 111760961 -12315211 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 4 1437 376 289 183 32 chr9 111761539 111761911 -12314261 + Charlie4a DNA MER1_type 76 503 -5 4 1437 414 0 0 0 chr9 111762004 111762050 -12314122 + (TTA)n Simple_repeat Simple_repeat 1 46 0 4 1437 350 196 10 0 chr9 111762058 111762155 -12314017 + GA-rich Low_complexity Low_complexity 1 98 0 4 1437 694 244 18 55 chr9 111762163 111762328 -12313844 - B3A SINE B2 -38 160 2 4 1437 573 231 0 0 chr9 111762537 111762684 -12313488 + (CA)n Simple_repeat Simple_repeat 2 148 0 4 1437 250 186 51 0 chr9 111762711 111762770 -12313402 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1437 272 239 14 0 chr9 111763079 111763101 -12313071 + polypyrimidine Low_complexity Low_complexity 53 74 0 4 1437 543 31 0 0 chr9 111763101 111763166 -12313006 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 4 1437 272 239 14 0 chr9 111763166 111763214 -12312958 + polypyrimidine Low_complexity Low_complexity 4 52 0 4 1437 348 381 27 67 chr9 111763214 111763439 -12312733 - B4 SINE B4 -63 229 14 4 1437 298 309 53 26 chr9 111763454 111763481 -12312691 - PB1D10 SINE Alu 0 117 3 4 1437 302 318 12 0 chr9 111763481 111763566 -12312606 - ID_B1 SINE B4 -55 169 84 4 1437 990 251 41 117 chr9 111763857 111764250 -12311922 + MTE2a LTR MaLR 13 375 -4 4 1437 286 309 78 26 chr9 111764261 111764414 -12311758 - L1MEc LINE L1 -664 5688 5528 4 1437 415 345 27 7 chr9 111764428 111764574 -12311598 - B1F SINE Alu 0 149 1 4 1437 330 255 35 74 chr9 111764577 111764747 -12311425 - L1MEc LINE L1 -815 5504 5341 4 1437 481 322 50 42 chr9 111765257 111765497 -12310675 - L1MEc LINE L1 -6124 276 35 4 1437 293 99 184 41 chr9 111765562 111765762 -12310410 + (GGATG)n Simple_repeat Simple_repeat 1 228 0 4 1437 600 256 43 11 chr9 111766135 111766295 -12309877 - ID_B1 SINE B4 -26 266 93 4 1437 21 0 0 0 chr9 111766355 111766376 -12309796 + AT_rich Low_complexity Low_complexity 1 21 0 4 1437 27 0 0 0 chr9 111766464 111766491 -12309681 + AT_rich Low_complexity Low_complexity 1 27 0 4 1437 260 83 21 0 chr9 111766871 111766919 -12309253 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 4 1437 1221 58 0 0 chr9 111766977 111767116 -12309056 + B1_Mus2 SINE Alu 1 139 -8 4 1437 743 62 0 0 chr9 111767210 111767306 -12308866 + BC1_Mm scRNA scRNA 1 96 -56 4 1437 1145 59 66 0 chr9 111767429 111767581 -12308591 + B2_Mm2 SINE B2 1 162 -33 4 1437 378 0 0 0 chr9 111767581 111767623 -12308549 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 4 1437 997 239 87 55 chr9 111767629 111767976 -12308196 - ORR1E LTR MaLR -29 341 3 4 1437 1056 247 166 43 chr9 111769223 111769549 -12306623 - MTD LTR MaLR -12 407 42 4 1437 959 282 101 0 chr9 111769594 111769842 -12306330 + B4 SINE B4 1 273 -19 4 1437 757 340 56 16 chr9 111769981 111770304 -12305868 - MLT1A0 LTR MaLR 0 365 30 4 1437 651 46 0 0 chr9 111770305 111770392 -12305780 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1437 374 299 88 0 chr9 111770415 111770562 -12305610 - Charlie2a DNA MER1_type -2120 741 582 4 1437 417 270 118 0 chr9 111771294 111771446 -12304726 + RMER15 LTR ERVL 405 574 -1 4 1437 324 77 46 0 chr9 111771764 111771829 -12304343 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1437 368 212 29 0 chr9 111772798 111772935 -12303237 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 1437 378 233 0 23 chr9 111773027 111773115 -12303057 - ID_B1 SINE B4 -2 222 137 4 1437 806 225 70 38 chr9 111773118 111773210 -12302962 - RLTR20C LTR ERVK -144 434 366 4 1437 351 0 0 0 chr9 111773210 111773249 -12302923 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1437 1046 213 71 60 chr9 111773249 111773611 -12302561 - RLTR20C LTR ERVK -213 365 3 4 1437 662 254 93 15 chr9 111774155 111774359 -12301813 + RCHARR1 DNA MER1_type 6 225 -749 4 1437 565 237 46 117 chr9 111774411 111774521 -12301651 + RCHARR1 DNA MER1_type 753 856 -118 4 1437 431 337 54 27 chr9 111774521 111774707 -12301465 - B3A SINE B2 -6 192 2 4 1437 565 237 46 117 chr9 111774707 111774835 -12301337 + RCHARR1 DNA MER1_type 857 974 0 4 1437 349 274 19 9 chr9 111774923 111775030 -12301142 - MER5A DNA MER1_type -74 115 8 4 1437 436 153 60 0 chr9 111775591 111775741 -12300431 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 4 1437 1912 210 24 41 chr9 111776776 111777025 -12299147 + MTD LTR MaLR 3 248 -171 4 1437 1194 144 119 0 chr9 111777025 111777227 -12298945 + URR1A DNA MER1_type 1 226 0 4 1437 1912 210 24 41 chr9 111777227 111777389 -12298783 + MTD LTR MaLR 249 407 -12 4 1437 352 271 28 14 chr9 111778555 111778600 -12297572 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1437 1727 42 0 0 chr9 111778600 111778790 -12297382 + B2_Mm1t SINE B2 2 191 -2 4 1437 352 271 28 14 chr9 111778790 111778886 -12297286 + (TG)n Simple_repeat Simple_repeat 1 97 0 4 1437 798 259 101 54 chr9 111778886 111779164 -12297008 - B4A SINE B4 0 292 2 4 1437 761 243 153 38 chr9 111779333 111779651 -12296521 - MTE2a LTR MaLR -7 412 17 4 1437 250 45 45 0 chr9 111779723 111779767 -12296405 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 4 1437 1237 68 0 20 chr9 111779767 111779918 -12296254 - B1_Mus1 SINE Alu 0 148 1 4 1437 1388 90 34 0 chr9 111779920 111780098 -12296074 - B2_Mm1t SINE B2 -8 185 2 4 1437 520 219 237 23 chr9 111780111 111780284 -12295888 - B3 SINE B2 -5 211 2 4 1437 586 276 76 76 chr9 111780670 111780829 -12295343 + B3A SINE B2 1 159 -36 4 1437 587 78 29 10 chr9 111780829 111780933 -12295239 + (CA)n Simple_repeat Simple_repeat 1 106 0 4 1437 403 276 76 76 chr9 111780933 111780957 -12295215 + B2_Mm2 SINE B2 160 183 -12 4 1437 24 32 0 0 chr9 111780986 111781017 -12295155 + AT_rich Low_complexity Low_complexity 1 31 0 4 1437 930 259 87 8 chr9 111781496 111781748 -12294424 + MTD LTR MaLR 35 306 -113 4 1437 3395 157 73 32 chr9 111781748 111782648 -12293524 + RLTR25B LTR ERVK 1 1103 0 5 1437 447 253 72 72 chr9 111782648 111782771 -12293401 + MTD LTR MaLR 297 419 0 5 1437 533 304 78 37 chr9 111783329 111783599 -12292573 + L1MB5 LINE L1 5883 6163 -11 5 1437 1351 288 67 60 chr9 111784214 111784782 -12291390 + Lx8 LINE L1 6892 7463 -10 5 1437 261 83 0 0 chr9 111784831 111784867 -12291305 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 1437 2445 251 79 42 chr9 111784868 111785580 -12290592 - Lx8 LINE L1 -35 7438 6701 5 1437 1748 274 29 41 chr9 111785572 111786253 -12289919 - Lx8 LINE L1 -1919 5725 5013 5 1437 729 254 5 79 chr9 111786770 111786984 -12289188 + B3A SINE B2 1 198 0 5 1437 351 247 76 81 chr9 111787476 111787648 -12288524 - LTR80B LTR ERVL -292 292 122 5 1437 378 0 0 0 chr9 111787870 111787912 -12288260 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 5 1437 232 179 119 0 chr9 111787941 111788008 -12288164 + Lx7 LINE L1 7620 7694 -2 5 1437 237 65 0 0 chr9 111788013 111788044 -12288128 + (ATG)n Simple_repeat Simple_repeat 2 32 0 5 1437 395 260 78 0 chr9 111788308 111788440 -12287732 - MLT2B4 LTR ERVL -346 169 30 5 1437 281 277 0 15 chr9 111788739 111788776 -12287396 + polypyrimidine Low_complexity Low_complexity 31 67 0 5 1437 1053 111 0 22 chr9 111788776 111788960 -12287212 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1437 281 277 0 15 chr9 111788960 111788988 -12287184 + polypyrimidine Low_complexity Low_complexity 3 30 0 5 1437 21 0 0 0 chr9 111789524 111789545 -12286627 + AT_rich Low_complexity Low_complexity 1 21 0 5 1437 1559 186 28 47 chr9 111790043 111790273 -12285899 - MTC LTR MaLR -2 419 192 5 1437 1196 77 6 35 chr9 111790273 111790447 -12285725 + L1Md_F2 LINE L1 6414 6582 0 5 1437 1559 186 28 47 chr9 111790447 111790533 -12285639 - MTC LTR MaLR -230 191 109 5 1437 5956 16 0 1 chr9 111790533 111791207 -12284965 - L1Md_T LINE L1 -288 5595 4923 5 1437 8695 31 0 0 chr9 111791207 111792163 -12284009 + L1Md_T LINE L1 5627 6582 0 5 1437 267 185 17 69 chr9 111792165 111792223 -12283949 - MTC LTR MaLR -301 120 66 5 1437 900 295 38 38 chr9 111792357 111792512 -12283660 - L1_Mur3 LINE L1 -815 5065 4912 5 1437 2849 31 9 27 chr9 111792512 111792845 -12283327 - IAPLTR2b LTR ERVK 0 327 1 5 1437 900 295 38 38 chr9 111792845 111793084 -12283088 - L1_Mur3 LINE L1 -969 4911 4671 5 1437 894 310 32 11 chr9 111793092 111793470 -12282702 + L1_Mur3 LINE L1 2401 2786 -3094 5 1437 327 250 48 48 chr9 111793495 111793600 -12282572 + Lx8 LINE L1 6291 6395 -1078 5 1437 405 0 0 0 chr9 111793603 111793648 -12282524 + (TAA)n Simple_repeat Simple_repeat 1 45 0 5 1437 394 110 68 22 chr9 111793648 111793744 -12282428 + B2_Mm2 SINE B2 2 177 -18 5 1437 980 253 39 14 chr9 111793765 111794050 -12282122 + Lx8 LINE L1 6405 6696 -777 5 1437 186 71 0 0 chr9 111794779 111794807 -12281365 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1437 672 215 0 0 chr9 111795384 111795505 -12280667 - ID_B1 SINE B4 0 224 104 5 1437 360 0 0 0 chr9 111795506 111795546 -12280626 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1437 735 12 0 0 chr9 111795546 111795629 -12280543 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1437 460 51 51 0 chr9 111795890 111795968 -12280204 + (TCTCTG)n Simple_repeat Simple_repeat 3 84 0 5 1437 246 196 22 0 chr9 111797417 111797463 -12278709 + PB1D10 SINE Alu 70 116 -1 5 1437 525 316 161 0 chr9 111797469 111797687 -12278485 + B4A SINE B4 36 288 -4 5 1437 384 125 0 0 chr9 111797689 111797753 -12278419 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1437 216 0 0 0 chr9 111798278 111798302 -12277870 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1437 522 230 26 9 chr9 111798313 111798427 -12277745 - PB1D10 SINE Alu 0 117 2 5 1437 270 0 0 0 chr9 111799252 111799282 -12276890 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1437 397 294 66 73 chr9 111799290 111799426 -12276746 - B3A SINE B2 -55 143 9 5 1437 931 278 45 41 chr9 111799610 111799876 -12276296 + B4 SINE B4 8 274 -18 5 1437 189 154 0 0 chr9 111799977 111800016 -12276156 + GA-rich Low_complexity Low_complexity 1 39 0 5 1437 413 19 19 0 chr9 111800034 111800088 -12276084 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1437 285 29 0 0 chr9 111800088 111800122 -12276050 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1437 21 0 0 0 chr9 111801580 111801601 -12274571 + AT_rich Low_complexity Low_complexity 1 21 0 5 1437 299 288 140 6 chr9 111801720 111801877 -12274295 - L1MD3 LINE L1 -16 7979 7802 5 1437 708 293 30 17 chr9 111802135 111802371 -12273801 + MER2 DNA MER2_type 87 325 -20 5 1437 540 0 0 0 chr9 111802594 111802654 -12273518 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1437 325 276 179 0 chr9 111803144 111803267 -12272905 + HAL1-3A_ME LINE L1 2647 2791 -67 5 1437 522 31 0 0 chr9 111803267 111803331 -12272841 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 5 1437 336 289 23 38 chr9 111803982 111804115 -12272057 + L1M5 LINE L1 5387 5517 -927 5 179 1230 269 41 29 chr9 111804249 111804593 -12271579 + ORR1E LTR MaLR 1 348 -11 5 1438 755 279 138 12 chr9 111804843 111805083 -12271089 - B4A SINE B4 -14 278 9 5 1438 369 0 0 0 chr9 111805086 111805127 -12271045 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1438 1190 239 62 22 chr9 111805637 111805958 -12270214 - RMER15 LTR ERVL 0 575 242 5 1438 189 0 0 0 chr9 111806513 111806534 -12269638 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1438 240 313 75 114 chr9 111806636 111806863 -12269309 - LTR33A LTR ERVL -186 334 117 5 1438 270 348 118 52 chr9 111806989 111807067 -12269105 - MER31A LTR ERV1 -84 401 331 5 1438 3434 57 2 0 chr9 111807067 111807472 -12268700 + L1_Mus1 LINE L1 6160 6565 -2 5 1438 270 348 118 52 chr9 111807472 111807681 -12268491 - MER31A LTR ERV1 -155 330 95 5 1438 568 250 61 140 chr9 111808198 111808412 -12267760 - B3A SINE B2 0 198 2 5 1438 331 290 43 0 chr9 111808576 111808669 -12267503 + B1F1 SINE Alu 1 97 -52 5 1438 237 231 19 0 chr9 111809532 111809584 -12266588 + L1M6 LINE L1 1709 1761 -4735 5 1438 978 201 90 0 chr9 111809723 111809912 -12266260 + B3 SINE B2 1 206 -10 5 1438 276 30 0 0 chr9 111809978 111810011 -12266161 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1438 367 284 57 57 chr9 111810632 111810826 -12265346 + MER20 DNA MER1_type 26 219 0 5 1438 435 299 92 20 chr9 111811865 111812114 -12264058 - L1MCa LINE L1 -1472 4849 4583 5 1438 225 0 0 0 chr9 111812364 111812389 -12263783 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 5 1438 649 266 7 0 chr9 111812652 111812791 -12263381 - RSINE1 SINE B4 -23 142 3 5 1438 356 303 38 102 chr9 111812791 111812928 -12263244 - L1MCa LINE L1 -5347 1161 1034 5 1438 422 277 54 0 chr9 111812928 111813040 -12263132 - PB1D7 SINE Alu -1 119 2 5 1438 356 303 38 102 chr9 111813040 111813295 -12262877 - L1MCa LINE L1 -5475 1033 794 5 1438 286 279 45 0 chr9 111813303 111813420 -12262752 - Lx9 LINE L1 -14 7630 7530 5 1438 180 0 0 0 chr9 111813420 111813440 -12262732 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 1438 286 293 159 14 chr9 111813440 111813556 -12262616 - Lx9 LINE L1 -115 7529 7393 5 1438 610 290 20 49 chr9 111815486 111815689 -12260483 + RMER30 DNA MER1_type 6 202 0 5 1438 33 56 0 0 chr9 111817094 111817148 -12259024 + AT_rich Low_complexity Low_complexity 1 54 0 5 1438 3525 65 26 0 chr9 111817148 111817578 -12258594 - L1_Mus1 LINE L1 -4 6563 6123 5 1438 198 0 0 0 chr9 111817721 111817743 -12258429 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 1438 486 255 144 70 chr9 111817788 111818045 -12258127 + B4A SINE B4 2 277 -15 5 1438 435 92 0 0 chr9 111818056 111818121 -12258051 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1438 329 285 36 109 chr9 111818868 111818899 -12257273 - B2_Mm1a SINE B2 -2 191 163 5 1438 225 0 0 0 chr9 111818899 111818924 -12257248 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1438 423 0 0 0 chr9 111818924 111818970 -12257202 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1438 712 241 4 11 chr9 111818970 111819130 -12257042 - B3A SINE B2 -31 162 13 5 1438 214 73 49 0 chr9 111820200 111820241 -12255931 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 5 1438 324 189 0 0 chr9 111820238 111820312 -12255860 + A-rich Low_complexity Low_complexity 1 74 0 5 1438 399 299 50 17 chr9 111820341 111820460 -12255712 + B1_Mus2 SINE Alu 7 129 -18 5 1438 22 35 0 0 chr9 111820670 111820699 -12255473 + AT_rich Low_complexity Low_complexity 1 29 0 5 1438 240 111 0 0 chr9 111821491 111821527 -12254645 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1438 709 257 6 26 chr9 111822827 111822841 -12253331 - RSINE1 SINE B4 -10 155 144 5 1438 3971 176 142 15 chr9 111822841 111823641 -12252531 + RMER19B LTR ERVK 1 902 0 5 1438 709 257 6 26 chr9 111823641 111823782 -12252390 - RSINE1 SINE B4 -22 143 3 5 1438 25 0 0 0 chr9 111823785 111823810 -12252362 + AT_rich Low_complexity Low_complexity 1 25 0 5 1438 820 267 10 16 chr9 111825275 111825469 -12250703 - B3 SINE B2 -5 211 19 5 1438 312 27 0 0 chr9 111825573 111825610 -12250562 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1438 225 154 0 0 chr9 111825622 111825661 -12250511 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1438 425 90 15 0 chr9 111825688 111825755 -12250417 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 5 1438 258 61 95 24 chr9 111826136 111826220 -12249952 + GA-rich Low_complexity Low_complexity 2 91 0 5 1438 450 135 29 0 chr9 111826502 111826606 -12249566 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 1438 288 266 128 81 chr9 111826655 111826827 -12249345 + MLT2B3 LTR ERVL 369 548 -6 5 1438 311 108 31 0 chr9 111827175 111827240 -12248932 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 5 1438 398 349 17 11 chr9 111827392 111827566 -12248606 - MLT1J-int LTR MaLR -949 438 264 5 1438 396 276 140 51 chr9 111827728 111827942 -12248230 - MT2A LTR ERVL -2 531 299 5 1438 231 88 0 0 chr9 111829307 111829341 -12246831 + (CACCAT)n Simple_repeat Simple_repeat 5 38 0 5 1438 459 194 46 46 chr9 111829344 111829452 -12246720 - PB1D10 SINE Alu -1 116 9 5 1438 582 221 0 0 chr9 111829799 111829971 -12246201 + (TA)n Simple_repeat Simple_repeat 1 172 0 5 1438 381 217 17 35 chr9 111830001 111830173 -12245999 + (TATATG)n Simple_repeat Simple_repeat 4 172 0 5 1438 582 213 11 17 chr9 111830207 111830388 -12245784 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1438 562 256 8 0 chr9 111830430 111830551 -12245621 - RSINE1 SINE B4 -38 127 6 6 1438 814 324 62 17 chr9 111830860 111831262 -12244910 + HAL1 LINE L1 1353 1772 -735 6 1438 873 175 209 0 chr9 111831596 111831773 -12244399 + B3 SINE B2 3 216 0 6 1438 1629 265 43 97 chr9 111832207 111832558 -12243614 + Lx8 LINE L1 6874 7217 -256 6 1438 1029 60 0 0 chr9 111832558 111832691 -12243481 + (GA)n Simple_repeat Simple_repeat 1 133 0 6 1438 1629 265 43 97 chr9 111832691 111832967 -12243205 + Lx8 LINE L1 7218 7467 -6 6 1438 656 158 38 10 chr9 111835518 111835835 -12240337 + (TG)n Simple_repeat Simple_repeat 1 326 0 6 1438 804 289 20 63 chr9 111835858 111836121 -12240051 - B4 SINE B4 0 292 38 6 1438 3056 70 22 12 chr9 111836121 111836524 -12239648 + MTB_Mm LTR MaLR 1 407 0 6 1438 804 289 20 63 chr9 111836524 111836563 -12239609 - B4 SINE B4 -255 37 3 6 1438 1304 96 11 0 chr9 111836733 111836911 -12239261 + B2_Mm1t SINE B2 2 181 -12 6 1438 360 130 291 17 chr9 111836954 111837071 -12239101 + B2_Mm2 SINE B2 47 195 0 6 1438 189 0 0 0 chr9 111837884 111837905 -12238267 + (TCC)n Simple_repeat Simple_repeat 1 21 0 6 1438 341 212 36 0 chr9 111838342 111838433 -12237739 + PB1D10 SINE Alu 12 111 -9 6 1438 238 283 17 0 chr9 111838438 111838498 -12237674 + ID4_ SINE ID 20 80 -3 6 1438 871 168 76 33 chr9 111838523 111838733 -12237439 + Lx5 LINE L1 6832 7050 0 6 1438 2508 135 12 30 chr9 111839230 111839657 -12236515 - MTC LTR MaLR 0 421 3 6 1438 449 120 0 12 chr9 111839928 111840012 -12236160 + (CCCCCT)n Simple_repeat Simple_repeat 5 87 0 6 1438 219 88 0 0 chr9 111840014 111840048 -12236124 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1438 319 215 31 0 chr9 111840101 111840166 -12236006 - B3A SINE B2 -130 68 2 6 1438 924 222 14 14 chr9 111840608 111840780 -12235392 + B3 SINE B2 2 173 -43 6 1438 905 141 251 6 chr9 111840780 111840959 -12235213 - URR1A DNA MER1_type 0 226 4 6 1438 924 222 14 14 chr9 111840959 111840996 -12235176 + B3 SINE B2 174 211 -5 6 1438 180 241 68 17 chr9 111844531 111844590 -12231582 + MIRc SINE MIR 87 148 -120 6 1438 351 0 0 0 chr9 111844628 111844667 -12231505 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1438 420 20 0 0 chr9 111844667 111844715 -12231457 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1438 21 0 0 0 chr9 111845759 111845780 -12230392 + AT_rich Low_complexity Low_complexity 1 21 0 6 1438 553 248 0 0 chr9 111846392 111846513 -12229659 - RSINE1 SINE B4 -42 123 3 6 1438 964 283 109 24 chr9 111847117 111847447 -12228725 - ORR1E LTR MaLR -1 358 1 6 1438 3077 140 50 0 chr9 111847486 111847987 -12228185 - Lx2B LINE L1 0 7000 6475 6 1438 1434 247 47 21 chr9 111847991 111848090 -12228082 - Lx8 LINE L1 -526 6947 6851 6 1438 447 19 0 0 chr9 111848090 111848142 -12228030 + (CCA)n Simple_repeat Simple_repeat 1 52 0 6 1438 1434 247 47 21 chr9 111848142 111848427 -12227745 - Lx8 LINE L1 -623 6850 6553 6 1438 508 165 9 9 chr9 111848474 111848590 -12227582 + GA-rich Low_complexity Low_complexity 3 118 0 6 1438 485 235 128 12 chr9 111848737 111848901 -12227271 + B3A SINE B2 1 183 -15 6 1438 261 146 0 0 chr9 111849286 111849334 -12226838 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1438 663 194 22 7 chr9 111849360 111849495 -12226677 + MTD LTR MaLR 1 137 -282 6 1438 191 204 0 18 chr9 111849505 111849560 -12226612 + CT-rich Low_complexity Low_complexity 3 56 0 6 1438 692 242 103 5 chr9 111849571 111849766 -12226406 + MTD LTR MaLR 150 363 -56 6 1438 280 223 62 21 chr9 111850095 111850191 -12225981 + RMER15 LTR ERVL 406 505 -70 6 1438 630 0 0 0 chr9 111850951 111851021 -12225151 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1438 282 226 91 45 chr9 111851296 111851384 -12224788 + B1_Mus1 SINE Alu 2 93 -55 6 1438 249 83 0 0 chr9 111851391 111851427 -12224745 + (CACCC)n Simple_repeat Simple_repeat 2 37 0 6 1438 35129 75 18 12 chr9 111851736 111856170 -12220002 - L1Md_F2 LINE L1 -2 6580 2080 6 1438 361 57 0 70 chr9 111856170 111856227 -12219945 - ORR1A1 LTR MaLR 0 346 294 6 1438 35129 75 18 12 chr9 111856227 111857924 -12218248 - L1Md_F2 LINE L1 -2 2079 356 6 1438 393 235 97 73 chr9 111858967 111859091 -12217081 - Lx7 LINE L1 0 7696 7570 6 1438 1401 163 20 0 chr9 111859104 111859356 -12216816 + MTC LTR MaLR 1 257 -164 6 1438 682 173 36 36 chr9 111859359 111859497 -12216675 - Lx7 LINE L1 -790 6906 6769 6 1438 694 148 9 9 chr9 111859789 111859905 -12216267 - PB1D9 SINE Alu -1 119 4 6 1438 597 289 10 54 chr9 111860412 111860617 -12215555 - B3A SINE B2 0 198 3 6 1438 492 235 33 88 chr9 111861192 111861374 -12214798 - MTEa LTR MaLR -37 342 171 6 1438 225 290 130 49 chr9 111861690 111861818 -12214354 - MIR SINE MIR -72 196 56 6 1438 564 158 53 0 chr9 111861876 111861990 -12214182 + ORR1D2 LTR MaLR 1 120 -250 6 1438 356 314 0 55 chr9 111861967 111862095 -12214077 + B4 SINE B4 172 292 0 6 1438 486 61 0 0 chr9 111862117 111862183 -12213989 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1438 647 25 12 0 chr9 111863484 111863565 -12212607 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 1438 538 289 142 57 chr9 111863919 111864235 -12211937 + Lx8 LINE L1 7102 7444 -29 6 1438 645 184 128 0 chr9 111864263 111864404 -12211768 + Lx9 LINE L1 7173 7331 -313 6 1438 693 202 62 23 chr9 111864477 111864654 -12211518 + Lx9 LINE L1 7260 7443 -201 6 1438 195 204 0 0 chr9 111865133 111865177 -12210995 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1438 362 284 25 17 chr9 111865465 111865583 -12210589 + PB1 SINE Alu 6 124 -3 6 1438 386 288 67 52 chr9 111865587 111865781 -12210391 + B3A SINE B2 2 198 0 6 1438 189 0 0 0 chr9 111866574 111866595 -12209577 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1438 813 278 15 5 chr9 111866685 111866880 -12209292 - B3A SINE B2 0 198 2 6 1438 351 167 0 0 chr9 111866894 111866960 -12209212 + (TTA)n Simple_repeat Simple_repeat 1 66 0 6 1438 449 183 10 0 chr9 111866960 111867064 -12209108 + (TG)n Simple_repeat Simple_repeat 1 105 0 6 1438 508 252 142 78 chr9 111867086 111867305 -12208867 - B4A SINE B4 -18 274 42 6 1438 431 278 165 16 chr9 111867576 111867736 -12208436 + ID_B1 SINE B4 2 190 -34 6 1438 1749 168 83 17 chr9 111867736 111868087 -12208085 + ORR1D1 LTR MaLR 1 374 0 6 1438 431 278 165 16 chr9 111868087 111868120 -12208052 + ID_B1 SINE B4 191 223 -1 6 1438 218 134 47 35 chr9 111868366 111868451 -12207721 + (TCTCTG)n Simple_repeat Simple_repeat 1 86 0 6 1438 1069 280 50 38 chr9 111870538 111870880 -12205292 - MTEa LTR MaLR -8 371 26 6 1438 632 241 28 28 chr9 111871354 111871499 -12204673 + RSINE1 SINE B4 2 146 -19 6 1438 11533 21 0 1 chr9 111871769 111873107 -12203065 - L1_Mm LINE L1 -1548 4335 2999 6 1438 3116 43 3 0 chr9 111873107 111873483 -12202689 + L1Md_T LINE L1 6206 6582 0 6 1438 355 209 105 0 chr9 111873498 111873584 -12202588 + L1_Mur3 LINE L1 5162 5256 -624 6 1438 22 0 0 0 chr9 111873724 111873746 -12202426 + AT_rich Low_complexity Low_complexity 1 22 0 6 1438 388 299 67 38 chr9 111873958 111874207 -12201965 + B4A SINE B4 6 286 -6 6 1438 594 255 25 20 chr9 111875492 111875677 -12200495 + B3A SINE B2 2 176 -19 6 1438 559 282 17 56 chr9 111876334 111876567 -12199605 + L1M2 LINE L1 5579 5802 -510 6 1438 972 262 157 11 chr9 111876667 111877018 -12199154 - MTD LTR MaLR 0 419 18 6 1438 993 92 0 0 chr9 111877150 111877314 -12198858 + (CA)n Simple_repeat Simple_repeat 2 165 0 6 1438 1652 124 74 0 chr9 111877344 111877627 -12198545 - ORR1A2 LTR MaLR -8 319 16 6 1438 230 261 147 40 chr9 111877758 111878009 -12198163 + L1MC LINE L1 3208 3485 -2661 6 1438 515 287 35 7 chr9 111878013 111878157 -12198015 - Lx8 LINE L1 -200 7273 7126 6 1438 316 247 13 0 chr9 111878275 111878352 -12197820 + B3A SINE B2 2 79 -119 6 1438 968 162 39 48 chr9 111878358 111878565 -12197607 + Lx5 LINE L1 6843 7047 -3 6 1438 303 287 36 36 chr9 111878941 111879053 -12197119 + B3 SINE B2 105 216 0 6 1438 240 315 52 35 chr9 111879282 111879374 -12196798 + RSINE1 SINE B4 46 141 -24 6 1438 414 57 0 0 chr9 111879374 111879427 -12196745 + (CATA)n Simple_repeat Simple_repeat 1 53 0 6 1438 240 315 52 35 chr9 111879427 111879449 -12196723 + RSINE1 SINE B4 142 162 -3 6 1438 992 242 134 16 chr9 111880065 111880372 -12195800 - MTD LTR MaLR -16 403 61 6 1438 282 55 71 18 chr9 111880747 111880803 -12195369 + (TCTCCC)n Simple_repeat Simple_repeat 1 59 0 6 1438 448 173 26 26 chr9 111880812 111880966 -12195206 + (TA)n Simple_repeat Simple_repeat 1 154 0 6 1438 330 26 0 0 chr9 111880972 111881011 -12195161 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1438 237 360 126 0 chr9 111881020 111881131 -12195041 + RSINE1 SINE B4 18 142 -23 6 1438 558 43 0 0 chr9 111881134 111881203 -12194969 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1438 333 0 0 0 chr9 111881203 111881240 -12194932 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 6 1438 291 308 28 19 chr9 111881266 111881372 -12194800 + B4A SINE B4 8 114 -178 6 1438 251 303 0 0 chr9 111881386 111881452 -12194720 + B4A SINE B4 208 273 -19 6 1438 411 200 125 23 chr9 111881884 111882012 -12194160 + B1F SINE Alu 1 141 -8 6 1438 391 245 11 0 chr9 111885090 111885184 -12190988 + B3A SINE B2 54 148 -50 6 1438 756 91 0 0 chr9 111885468 111885578 -12190594 + (TG)n Simple_repeat Simple_repeat 2 111 0 6 1438 231 204 0 0 chr9 111885582 111885631 -12190541 - L1MA8 LINE L1 -152 6139 6091 6 1438 683 209 11 62 chr9 111885650 111885842 -12190330 - B3A SINE B2 -4 194 13 6 1438 539 299 53 0 chr9 111885842 111886049 -12190123 - L1MA9 LINE L1 -216 6096 5879 6 1438 243 273 45 0 chr9 111886540 111886606 -12189566 + B3A SINE B2 114 182 -16 6 1438 669 293 78 15 chr9 111886854 111887124 -12189048 + B4 SINE B4 5 291 -1 6 1438 242 143 20 0 chr9 111887839 111887888 -12188284 + CT-rich Low_complexity Low_complexity 5 54 0 6 1438 28 0 0 0 chr9 111889117 111889145 -12187027 + AT_rich Low_complexity Low_complexity 1 28 0 6 1438 825 240 82 67 chr9 111889648 111889978 -12186194 - RLTR14 LTR ERV1 -44 338 4 7 1438 297 360 110 33 chr9 111890014 111890313 -12185859 + MT2A LTR ERVL 104 425 -108 7 1438 468 176 0 0 chr9 111890666 111890768 -12185404 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 1438 378 0 0 0 chr9 111890856 111890898 -12185274 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1438 744 292 9 36 chr9 111890903 111891123 -12185049 - B4A SINE B4 -8 284 71 7 1438 227 194 97 0 chr9 111893389 111893451 -12182721 + L1MD LINE L1 4857 4924 -1222 7 1438 263 313 32 73 chr9 111893497 111893621 -12182551 + ID_B1 SINE B4 9 127 -97 7 1438 7966 53 9 1 chr9 111893621 111894634 -12181538 + L1_Mus1 LINE L1 5547 6567 0 7 1438 636 285 48 26 chr9 111894711 111894981 -12181191 + L1MD LINE L1 5050 5325 -821 7 1438 31 0 0 0 chr9 111896110 111896141 -12180031 + AT_rich Low_complexity Low_complexity 1 31 0 7 1438 475 254 120 38 chr9 111896153 111896337 -12179835 - B4A SINE B4 -87 205 7 7 1438 21 0 0 0 chr9 111898388 111898409 -12177763 + AT_rich Low_complexity Low_complexity 1 21 0 7 1438 22 35 0 0 chr9 111898555 111898584 -12177588 + AT_rich Low_complexity Low_complexity 1 29 0 7 1438 186 43 0 0 chr9 111899257 111899280 -12176892 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 7 1438 1236 176 34 19 chr9 111899285 111899494 -12176678 + B3 SINE B2 5 216 0 7 1438 381 287 36 82 chr9 111899865 111899901 -12176271 - B4 SINE B4 -11 281 245 7 1438 1339 252 64 28 chr9 111899901 111900260 -12175912 + ORR1D1 LTR MaLR 1 372 -2 7 1438 381 287 36 82 chr9 111900260 111900333 -12175839 - B4 SINE B4 -48 244 177 7 1438 290 203 15 15 chr9 111900532 111900597 -12175575 + Lx8 LINE L1 6726 6790 -683 7 1438 1302 236 0 0 chr9 111900633 111900896 -12175276 - MTD LTR MaLR -156 263 1 7 1438 1075 342 50 11 chr9 111900896 111901339 -12174833 + Lx8 LINE L1 6867 7326 -147 7 1438 252 86 0 0 chr9 111901376 111901411 -12174761 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1438 21 0 0 0 chr9 111901569 111901590 -12174582 + AT_rich Low_complexity Low_complexity 1 21 0 7 1438 559 315 44 34 chr9 111901591 111901795 -12174377 + B4 SINE B4 84 289 -3 7 1438 315 85 0 0 chr9 111901861 111901908 -12174264 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1438 868 307 10 17 chr9 111902185 111902473 -12173699 + Lx8 LINE L1 6716 7001 -472 7 1438 216 294 67 19 chr9 111902492 111902596 -12173576 + B1_Mur2 SINE Alu 41 149 0 7 1438 298 311 11 0 chr9 111903872 111903962 -12172210 + ID_B1 SINE B4 2 92 -132 7 1438 4763 128 21 6 chr9 111903973 111904766 -12171406 + RLTR22_Mur LTR ERVK 1 805 -1043 7 1438 432 37 0 0 chr9 111904775 111904829 -12171343 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1438 506 329 36 45 chr9 111905078 111905301 -12170871 + RMER12 LTR ERVK 1101 1321 -1 7 1438 529 236 16 16 chr9 111905301 111905414 -12170758 + ID_B1 SINE B4 107 219 -5 7 1438 183 412 56 6 chr9 111906599 111906760 -12169412 - L2 LINE L2 -871 2548 2380 7 1438 451 277 31 0 chr9 111907006 111907136 -12169036 + B1F SINE Alu 2 135 -14 7 1438 1006 88 0 0 chr9 111907259 111907395 -12168777 + B1_Mus2 SINE Alu 12 147 0 7 1438 233 333 72 10 chr9 111907447 111907544 -12168628 + RSINE1 SINE B4 54 156 -9 7 1438 219 78 0 56 chr9 111907544 111907598 -12168574 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 7 1438 364 306 178 61 chr9 111907598 111908176 -12167996 + L1M4c LINE L1 681 1326 -5058 7 1438 942 101 8 0 chr9 111908265 111908394 -12167778 + B1_Mus1 SINE Alu 19 148 0 7 1438 333 0 0 0 chr9 111908394 111908431 -12167741 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 7 1438 526 324 128 29 chr9 111908676 111908842 -12167330 + L1M4c LINE L1 2715 2892 -3484 7 1438 228 111 0 0 chr9 111908842 111908878 -12167294 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1438 526 324 128 29 chr9 111908878 111909267 -12166905 + L1M4c LINE L1 2893 3325 -3051 7 1438 228 111 0 0 chr9 111909281 111909317 -12166855 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1438 245 234 246 16 chr9 111909341 111909467 -12166705 + L1M4c LINE L1 3637 3791 -2585 7 1438 423 327 57 37 chr9 111909704 111909971 -12166201 + L1M4c LINE L1 3845 4107 -2275 7 1438 247 278 10 62 chr9 111910085 111910181 -12165991 + PB1D10 SINE Alu 27 117 0 7 1438 910 283 25 50 chr9 111910468 111910751 -12165421 + B4A SINE B4 3 278 -14 7 1438 418 70 14 14 chr9 111910780 111910852 -12165320 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1438 315 0 0 0 chr9 111910852 111910886 -12165286 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1438 23 54 0 0 chr9 111910887 111910924 -12165248 + AT_rich Low_complexity Low_complexity 1 37 0 7 1438 361 304 109 29 chr9 111911163 111911373 -12164799 + L1MEg LINE L1 1124 1350 -4734 7 1438 204 200 0 0 chr9 111911593 111911638 -12164534 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1438 524 16 0 0 chr9 111912265 111912328 -12163844 + L1Md_F3 LINE L1 6508 6570 -14 7 1438 596 284 74 37 chr9 111912344 111912534 -12163638 + ID_B1 SINE B4 15 211 -13 7 1438 1638 89 5 0 chr9 111912676 111912900 -12163272 + ORR1A3 LTR MaLR 102 326 0 7 1438 790 169 31 0 chr9 111913029 111913159 -12163013 + B1_Mur3 SINE Alu 5 138 -11 7 1438 1738 178 13 86 chr9 111913159 111913533 -12162639 - ORR1B1 LTR MaLR -7 387 41 7 1438 229 100 20 20 chr9 111913565 111913616 -12162556 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1438 265 256 12 23 chr9 111913816 111913898 -12162274 + B1F1 SINE Alu 1 80 -69 7 1438 744 43 0 0 chr9 111914263 111914355 -12161817 + (TTC)n Simple_repeat Simple_repeat 3 94 0 7 1438 1262 222 158 22 chr9 111914813 111915135 -12161037 + ORR1D2 LTR MaLR 1 366 -4 7 1438 302 67 22 0 chr9 111915180 111915225 -12160947 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1438 452 248 62 23 chr9 111916083 111916095 -12160077 - B1F2 SINE Alu -1 148 138 7 1438 831 112 0 0 chr9 111916095 111916220 -12159952 + (TTTC)n Simple_repeat Simple_repeat 3 127 0 7 1438 452 248 62 23 chr9 111916220 111916335 -12159837 - B1F2 SINE Alu -12 137 16 7 1438 257 329 23 12 chr9 111916719 111916805 -12159367 + MLT1A0 LTR MaLR 21 107 -258 7 1438 33 0 0 0 chr9 111917339 111917372 -12158800 + AT_rich Low_complexity Low_complexity 1 33 0 7 1438 519 151 0 0 chr9 111917976 111918069 -12158103 + GA-rich Low_complexity Low_complexity 1 93 0 7 1438 700 287 164 23 chr9 111918079 111918468 -12157704 + RMER5 LTR ERV1 25 468 -66 7 1438 197 292 33 11 chr9 111919370 111919460 -12156712 + MIRb SINE MIR 101 192 -76 7 1438 865 267 160 17 chr9 111919525 111919818 -12156354 + ORR1E LTR MaLR 15 349 -10 7 1438 1521 239 29 36 chr9 111920068 111920481 -12155691 + RMER19C LTR ERVK 138 547 -64 7 1438 307 297 59 29 chr9 111921978 111922124 -12154048 + B4A SINE B4 2 154 -138 7 1438 297 0 0 0 chr9 111923008 111923041 -12153131 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1438 315 96 0 0 chr9 111923460 111923512 -12152660 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1438 245 244 12 0 chr9 111923554 111923640 -12152532 + (TA)n Simple_repeat Simple_repeat 2 88 0 7 1438 614 210 21 0 chr9 111924533 111924676 -12151496 + Lx9 LINE L1 7298 7443 -201 7 1438 464 151 45 60 chr9 111924696 111924830 -12151342 + Lx9 LINE L1 7513 7644 0 7 1438 226 226 0 0 chr9 111925025 111925078 -12151094 + Lx8 LINE L1 6130 6182 -1291 7 1438 597 276 91 0 chr9 111925760 111925959 -12150213 + Lx8 LINE L1 6167 6383 -1090 7 1438 288 285 227 60 chr9 111927054 111927600 -12148572 - L1M2 LINE L1 -2285 3858 3222 7 1438 291 28 0 0 chr9 111927624 111927660 -12148512 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1438 698 335 4 42 chr9 111927667 111927904 -12148268 - B4A SINE B4 -62 230 3 7 1438 589 305 89 51 chr9 111928555 111928925 -12147247 - MLT1B LTR MaLR -2 388 5 7 1438 1107 217 94 53 chr9 111929328 111929790 -12146382 - RLTR20A2 LTR ERVK 0 551 1 7 1438 258 267 13 13 chr9 111929864 111929940 -12146232 - L1MA7 LINE L1 -47 6244 6169 7 1438 273 308 12 93 chr9 111930304 111930390 -12145782 + MER58A DNA MER1_type 2 80 -144 7 1438 610 320 82 51 chr9 111930467 111930760 -12145412 - MER70B LTR ERVL -257 321 20 7 1438 889 328 25 4 chr9 111930920 111931165 -12145007 + B4A SINE B4 1 250 -42 7 1438 308 70 23 0 chr9 111931195 111931238 -12144934 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 7 1438 617 124 8 0 chr9 111931239 111931368 -12144804 + (TC)n Simple_repeat Simple_repeat 2 131 0 7 1438 342 0 0 0 chr9 111931368 111931406 -12144766 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1438 759 16 47 39 chr9 111931775 111931904 -12144268 + (TTTCC)n Simple_repeat Simple_repeat 2 131 0 7 1438 278 340 9 55 chr9 111931992 111932101 -12144071 - BC1_Mm scRNA scRNA -48 104 1 7 1438 367 235 0 69 chr9 111932018 111932105 -12144067 - ID SINE ID -141 83 3 7 1438 383 277 109 0 chr9 111932141 111932242 -12143930 - B1F SINE Alu -28 121 10 7 1438 1541 230 35 73 chr9 111932432 111932859 -12143313 + MTC LTR MaLR 3 413 -8 7 1438 309 350 8 68 chr9 111932860 111932992 -12143180 - B1_Mur1 SINE Alu -25 124 1 7 1438 803 247 82 0 chr9 111932992 111933058 -12143114 - B4 SINE B4 -207 85 5 7 1438 1076 230 92 15 chr9 111933942 111934234 -12141938 - MTD LTR MaLR -109 298 1 7 1438 380 200 104 10 chr9 111934288 111934384 -12141788 - RSINE1 SINE B4 -36 129 25 7 1439 668 74 11 0 chr9 111935508 111935603 -12140569 + (GA)n Simple_repeat Simple_repeat 2 97 0 7 1439 353 164 21 28 chr9 111935687 111935831 -12140341 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 7 1439 1817 194 35 143 chr9 111935922 111936468 -12139704 - RMER17A2 LTR ERVK -38 868 382 7 1439 290 51 0 0 chr9 111936467 111936499 -12139673 - RMER17A2 LTR ERVK -701 257 226 7 1439 2064 80 25 13 chr9 111936499 111936817 -12139355 + RLTRETN_Mm LTR ERVK 1 322 0 7 1439 1747 86 9 0 chr9 111936817 111937046 -12139126 - RMER17A2 LTR ERVK -727 231 1 7 1439 941 261 25 8 chr9 111937067 111937303 -12138869 - ORR1E LTR MaLR -119 240 1 7 1439 1258 257 100 3 chr9 111937565 111937728 -12138444 + MTE2b LTR MaLR 18 190 -189 7 1439 486 0 0 0 chr9 111937728 111937782 -12138390 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1439 1258 257 100 3 chr9 111937782 111937938 -12138234 + MTE2b LTR MaLR 191 367 -12 7 1439 691 198 57 9 chr9 111938263 111938436 -12137736 - ORR1C2 LTR MaLR 0 384 173 7 1439 785 297 30 30 chr9 111938435 111938765 -12137407 - RLTR15 LTR ERVK -16 343 14 7 1439 300 327 147 21 chr9 111938765 111939146 -12137026 + L1MC LINE L1 3868 4296 -1850 8 1439 355 329 74 21 chr9 111939159 111939458 -12136714 + L1MC LINE L1 4345 4661 -1485 8 1439 606 309 41 30 chr9 111939467 111939664 -12136508 + B4A SINE B4 29 227 -65 8 1439 723 266 124 5 chr9 111939701 111939894 -12136278 - B3 SINE B2 0 216 1 8 1439 189 297 16 0 chr9 111940178 111940242 -12135930 - L2 LINE L2 -1400 2019 1955 8 1439 226 286 0 0 chr9 111941080 111941136 -12135036 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1439 442 152 11 11 chr9 111941136 111941229 -12134943 + GA-rich Low_complexity Low_complexity 1 93 0 8 1439 359 328 31 92 chr9 111941229 111941424 -12134748 + B3A SINE B2 1 183 -15 8 1439 816 283 58 38 chr9 111941507 111941768 -12134404 + B4A SINE B4 4 269 -23 8 1439 387 0 0 0 chr9 111941770 111941813 -12134359 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1439 641 76 11 0 chr9 111942388 111942480 -12133692 + (TTC)n Simple_repeat Simple_repeat 2 94 0 8 1439 960 139 0 0 chr9 111942480 111942638 -12133534 + (TTCC)n Simple_repeat Simple_repeat 3 160 0 8 1439 1301 144 43 69 chr9 111942805 111943036 -12133136 - URR1B DNA MER1_type 0 225 1 8 1439 600 14 0 0 chr9 111943527 111943596 -12132576 + (TC)n Simple_repeat Simple_repeat 1 69 0 8 1439 227 182 110 96 chr9 111944197 111944270 -12131902 + MER5A1 DNA MER1_type 41 114 -52 8 1439 2173 197 34 86 chr9 111944560 111945093 -12131079 - RLTR24 LTR ERV1 -24 505 1 8 1439 228 35 0 0 chr9 111945279 111945308 -12130864 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1439 510 279 93 55 chr9 111945323 111945505 -12130667 - ID_B1 SINE B4 -20 204 16 8 1439 870 274 97 58 chr9 111945602 111945982 -12130190 - RLTR18B LTR ERVK 0 512 118 8 1439 511 181 0 0 chr9 111946009 111946103 -12130069 + MT2A LTR ERVL 6 99 -434 8 1439 1251 171 80 16 chr9 111946102 111946351 -12129821 - ORR1C2 LTR MaLR -12 372 108 8 1439 438 20 0 0 chr9 111946947 111946998 -12129174 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1439 465 19 0 0 chr9 111947064 111947118 -12129054 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 1439 259 117 0 0 chr9 111947132 111947192 -12128980 + MT2A LTR ERVL 466 525 -8 8 1439 508 333 163 37 chr9 111947252 111947632 -12128540 + MLT1H LTR MaLR 24 451 -98 8 1439 775 255 56 75 chr9 111947639 111947944 -12128228 - MTE2a LTR MaLR -5 374 76 8 1439 486 0 0 0 chr9 111949087 111949141 -12127031 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1439 765 41 0 0 chr9 111949434 111949531 -12126641 + (CA)n Simple_repeat Simple_repeat 2 98 0 8 1439 232 269 125 25 chr9 111950232 111950312 -12125860 + PB1D7 SINE Alu 33 120 0 8 1439 238 218 136 11 chr9 111950736 111950824 -12125348 - L1M5 LINE L1 -288 5836 5738 8 1439 378 0 0 0 chr9 111951917 111951959 -12124213 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1439 236 271 21 0 chr9 111951962 111952010 -12124162 - ID SINE ID -154 70 22 8 1439 2823 155 155 7 chr9 111952991 111953564 -12122608 - Lx5 LINE L1 -785 6265 5608 8 1439 1105 185 9 0 chr9 111953555 111953771 -12122401 - Lx5 LINE L1 -503 5377 5160 8 1439 5109 41 0 5 chr9 111953773 111954383 -12121789 - L1Md_F3 LINE L1 -1 6583 5977 8 1439 3355 18 0 3 chr9 111954383 111954804 -12121368 + L1Md_F3 LINE L1 5543 5962 -622 8 1439 415 129 0 0 chr9 111954801 111954863 -12121309 - Lx5 LINE L1 -710 5167 5106 8 1439 3563 216 29 27 chr9 111954864 111955612 -12120560 + Lx5 LINE L1 6277 7026 -24 8 1439 29 78 0 0 chr9 111955660 111955724 -12120448 + AT_rich Low_complexity Low_complexity 1 64 0 8 1439 212 286 0 18 chr9 111956438 111956495 -12119677 + L4 LINE RTE 1768 1823 -206 8 1439 1241 235 4 8 chr9 111956623 111956885 -12119287 - MTD LTR MaLR -144 275 15 8 1439 221 111 44 0 chr9 111958302 111958347 -12117825 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 8 1439 192 77 0 0 chr9 111958416 111958442 -12117730 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1439 686 278 28 67 chr9 111958495 111958780 -12117392 - B4A SINE B4 -18 274 1 8 1439 360 0 0 0 chr9 111960042 111960082 -12116090 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1439 324 311 37 0 chr9 111960104 111960239 -12115933 + RMER15 LTR ERVL 422 561 -14 8 1439 219 293 0 0 chr9 111960759 111960800 -12115372 + T-rich Low_complexity Low_complexity 35 75 0 8 1439 1176 61 7 0 chr9 111960800 111960947 -12115225 - B1_Mus1 SINE Alu 0 148 1 8 1439 219 293 0 0 chr9 111960947 111960980 -12115192 + T-rich Low_complexity Low_complexity 2 34 0 8 1439 843 168 62 46 chr9 111961120 111961314 -12114858 - MTD LTR MaLR 0 419 223 8 1439 315 191 16 0 chr9 111961387 111961450 -12114722 - MTD LTR MaLR -350 69 6 8 1439 314 230 101 22 chr9 111961875 111961964 -12114208 - B1_Mm SINE Alu -51 96 1 8 1439 489 34 0 0 chr9 111961969 111962028 -12114144 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1439 607 281 49 0 chr9 111962053 111962217 -12113955 - B3 SINE B2 -27 189 18 8 1439 317 306 95 38 chr9 111962493 111962755 -12113417 + B4A SINE B4 2 278 -14 8 1439 676 218 0 11 chr9 111962780 111962961 -12113211 + (TA)n Simple_repeat Simple_repeat 2 180 0 8 1439 233 233 0 0 chr9 111962961 111963004 -12113168 + (TATATG)n Simple_repeat Simple_repeat 1 43 0 8 1439 293 244 101 13 chr9 111963004 111963083 -12113089 - B1_Mus2 SINE Alu -61 86 1 8 1439 211 218 71 18 chr9 111964158 111964214 -12111958 + PB1D9 SINE Alu 1 59 -61 8 1439 366 356 0 0 chr9 111964214 111964360 -12111812 + G-rich Low_complexity Low_complexity 1 146 0 8 1439 309 279 0 0 chr9 111964361 111964540 -12111632 + GA-rich Low_complexity Low_complexity 2 180 0 8 1439 320 263 0 21 chr9 111964552 111964837 -12111335 + GA-rich Low_complexity Low_complexity 1 278 0 8 1439 358 336 7 0 chr9 111964841 111964981 -12111191 + (CAGG)n Simple_repeat Simple_repeat 2 142 0 8 1439 339 268 0 0 chr9 111964982 111965161 -12111011 + GA-rich Low_complexity Low_complexity 2 180 0 8 1439 424 231 19 9 chr9 111965173 111965278 -12110894 + B1_Mur2 SINE Alu 42 147 -2 8 1439 477 296 127 0 chr9 111965556 111965698 -12110474 + RSINE1 SINE B4 4 163 -2 8 1439 330 26 0 0 chr9 111965710 111965749 -12110423 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1439 333 0 0 0 chr9 111965749 111965786 -12110386 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 8 1439 775 280 106 27 chr9 111966964 111967265 -12108907 + Lx8 LINE L1 6922 7246 -227 8 1439 709 215 74 23 chr9 111967302 111967478 -12108694 + MTC LTR MaLR 183 367 -54 8 1439 306 0 0 0 chr9 111967507 111967541 -12108631 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 8 1439 22 0 0 0 chr9 111967910 111967932 -12108240 + AT_rich Low_complexity Low_complexity 1 22 0 8 1439 244 267 0 0 chr9 111968627 111968687 -12107485 + MIRc SINE MIR 61 120 -148 8 1439 319 256 39 0 chr9 111968722 111968800 -12107372 + RMER30 DNA MER1_type 122 202 0 8 1439 202 233 0 0 chr9 111968894 111968937 -12107235 + CT-rich Low_complexity Low_complexity 3 45 0 8 1439 335 250 0 23 chr9 111971946 111972032 -12104140 + B4 SINE B4 3 86 -206 8 1439 299 0 78 0 chr9 111972033 111972084 -12104088 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 8 1439 693 304 24 10 chr9 111972084 111972293 -12103879 + B4 SINE B4 81 292 0 8 1439 329 211 0 8 chr9 111972362 111972486 -12103686 + (CA)n Simple_repeat Simple_repeat 2 124 0 8 1439 290 258 10 0 chr9 111972498 111972595 -12103577 + (CA)n Simple_repeat Simple_repeat 1 98 0 8 1439 1013 168 0 50 chr9 111972932 111973151 -12103021 + URR1B DNA MER1_type 18 225 0 8 1439 711 101 0 0 chr9 111973397 111973516 -12102656 + (GA)n Simple_repeat Simple_repeat 2 120 0 8 1439 21 0 0 0 chr9 111974304 111974325 -12101847 + AT_rich Low_complexity Low_complexity 1 21 0 8 1439 561 99 0 0 chr9 111974464 111974545 -12101627 + (TG)n Simple_repeat Simple_repeat 2 82 0 8 1439 837 307 14 28 chr9 111974910 111975198 -12100974 + B4A SINE B4 8 291 -1 8 1439 621 27 0 0 chr9 111975721 111975796 -12100376 + (TC)n Simple_repeat Simple_repeat 1 75 0 8 1439 501 293 77 67 chr9 111976190 111976229 -12099943 - MTE2a LTR MaLR -34 345 307 8 1439 223 72 23 23 chr9 111976229 111976272 -12099900 + (TTG)n Simple_repeat Simple_repeat 3 45 0 8 1439 501 293 77 67 chr9 111976272 111976517 -12099655 - MTE2a LTR MaLR -73 306 58 8 1439 239 143 0 39 chr9 111977747 111977798 -12098374 + CT-rich Low_complexity Low_complexity 3 51 0 8 1439 446 221 40 162 chr9 111978439 111978612 -12097560 - RCHARR1 DNA MER1_type -819 155 4 8 1439 207 0 0 0 chr9 111979437 111979460 -12096712 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1439 196 102 20 20 chr9 111980350 111980400 -12095772 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 8 1439 297 0 0 0 chr9 111980432 111980465 -12095707 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1439 299 284 0 0 chr9 111980581 111980648 -12095524 - B4A SINE B4 -221 71 5 8 1439 635 275 12 18 chr9 111980991 111981154 -12095018 + RSINE1 SINE B4 3 164 -1 8 1439 695 313 43 18 chr9 111981813 111982093 -12094079 + B4 SINE B4 2 288 -4 8 1439 549 247 45 26 chr9 111982567 111982721 -12093451 + MTE2a LTR MaLR 5 161 -218 8 1439 239 330 9 48 chr9 111983121 111983226 -12092946 - LTR33 LTR ERVL -334 181 81 8 1439 920 216 51 5 chr9 111983425 111983620 -12092552 - B3 SINE B2 -11 205 2 8 1439 215 333 15 0 chr9 111985362 111985428 -12090744 + RSINE1 SINE B4 86 152 -13 8 1439 275 219 16 0 chr9 111985429 111985544 -12090628 + (CA)n Simple_repeat Simple_repeat 1 116 0 8 1439 407 233 39 10 chr9 111986096 111986200 -12089972 - B1F1 SINE Alu -8 141 35 8 1439 299 297 62 17 chr9 111986196 111986374 -12089798 - Charlie21a DNA MER1_type -479 734 549 8 1439 926 208 96 0 chr9 111986564 111986761 -12089411 + B3 SINE B2 1 216 0 8 1439 201 329 14 0 chr9 111986832 111986902 -12089270 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 8 1439 864 159 6 24 chr9 111987066 111987234 -12088938 + URR1A DNA MER1_type 62 226 0 8 1439 275 250 97 0 chr9 111987234 111987299 -12088873 - B1F SINE Alu -61 88 17 8 1439 430 263 42 35 chr9 111987381 111987523 -12088649 + B4A SINE B4 2 144 -148 8 1439 642 225 0 4 chr9 111987677 111987906 -12088266 + (CA)n Simple_repeat Simple_repeat 1 227 0 8 1439 246 268 0 0 chr9 111987920 111987976 -12088196 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1439 23 54 0 0 chr9 111988497 111988534 -12087638 + AT_rich Low_complexity Low_complexity 1 37 0 9 1439 280 178 27 0 chr9 111988549 111988622 -12087550 + GA-rich Low_complexity Low_complexity 3 77 0 9 1439 342 254 0 0 chr9 111988636 111988707 -12087465 - B3A SINE B2 -127 71 1 9 1439 23 54 0 0 chr9 111988905 111988942 -12087230 + AT_rich Low_complexity Low_complexity 1 37 0 9 1439 321 306 47 39 chr9 111988977 111989106 -12087066 - Lx8 LINE L1 -281 7192 7063 9 1439 286 260 8 23 chr9 111989181 111989220 -12086952 + polypurine Low_complexity Low_complexity 2 40 0 9 1439 964 139 6 6 chr9 111989220 111989393 -12086779 + GA-rich Low_complexity Low_complexity 2 174 0 9 1439 1424 0 24 0 chr9 111989395 111989731 -12086441 + (GAA)n Simple_repeat Simple_repeat 1 343 0 9 1439 286 260 8 23 chr9 111989731 111989817 -12086355 + GA-rich Low_complexity Low_complexity 41 126 0 9 1439 317 241 161 0 chr9 111990261 111990348 -12085824 + ID_B1 SINE B4 100 200 -24 9 1439 629 302 29 17 chr9 111990374 111990613 -12085559 + B4A SINE B4 2 243 -49 9 1439 432 0 0 0 chr9 111990667 111990715 -12085457 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1439 267 31 0 0 chr9 111991170 111991202 -12084970 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 9 1439 679 293 30 0 chr9 111991445 111991643 -12084529 - B3 SINE B2 -7 209 6 9 1439 221 162 216 0 chr9 111992252 111992326 -12083846 - PB1D7 SINE Alu -10 110 21 9 1439 188 105 50 50 chr9 111994761 111994801 -12081371 - L3 LINE CR1 -3568 921 882 9 1439 301 111 0 45 chr9 111994921 111994987 -12081185 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 9 1439 390 85 0 0 chr9 111994992 111995051 -12081121 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1439 340 295 56 70 chr9 111996366 111996508 -12079664 + Tigger7 DNA MER2_type 2 141 -2350 9 1439 1112 191 132 63 chr9 111996639 111997002 -12079170 - MTD LTR MaLR -14 405 18 9 1439 2961 35 0 0 chr9 111997097 111997445 -12078727 + L1Md_A LINE L1 6235 6582 0 9 1439 892 283 84 34 chr9 111997448 111997924 -12078248 + Tigger7 DNA MER2_type 354 853 -1638 9 1439 405 0 0 0 chr9 111998470 111998515 -12077657 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1439 580 158 11 33 chr9 111998954 111999137 -12077035 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 9 1439 850 53 46 17 chr9 111999826 112000000 -12076172 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1439 724 57 63 6 chr9 112000000 112000158 -12076014 + (TG)n Simple_repeat Simple_repeat 1 167 0 1 1439 1042 274 30 0 chr9 112000223 112000489 -12075683 - B4A SINE B4 -18 274 1 2 1439 260 362 0 0 chr9 112001406 112001511 -12074661 + (TATG)n Simple_repeat Simple_repeat 4 108 0 3 1439 835 162 17 6 chr9 112001512 112001686 -12074486 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 4 1439 367 318 161 40 chr9 112001686 112001909 -12074263 - B4 SINE B4 0 292 43 5 1439 300 296 131 20 chr9 112002035 112002234 -12073938 - MIR SINE MIR -30 238 13 6 1439 275 292 118 33 chr9 112002591 112002743 -12073429 + Tigger15a DNA TcMar 110 274 -441 7 1439 893 63 8 23 chr9 112004198 112004328 -12071844 + L1Md_F2 LINE L1 6443 6570 -12 8 1439 252 0 0 0 chr9 112004529 112004557 -12071615 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1439 462 286 0 77 chr9 112004566 112004748 -12071424 - B4A SINE B4 -120 172 5 1 1439 258 316 0 13 chr9 112004768 112004845 -12071327 - ID4_ SINE ID -4 79 4 1 1439 251 93 0 23 chr9 112006370 112006414 -12069758 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1 1439 584 308 87 0 chr9 112006416 112006601 -12069571 - ID_B1 SINE B4 -13 211 11 1 1439 267 54 0 0 chr9 112006754 112006791 -12069381 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1439 480 139 0 0 chr9 112007107 112007186 -12068986 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1439 447 52 0 0 chr9 112008011 112008069 -12068103 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1439 324 158 0 0 chr9 112008826 112008883 -12067289 + GA-rich Low_complexity Low_complexity 1 57 0 1 1439 225 94 0 0 chr9 112008884 112008916 -12067256 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1439 418 143 40 35 chr9 112009930 112010104 -12066068 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 1 1439 366 61 0 0 chr9 112010127 112010176 -12065996 + (TATG)n Simple_repeat Simple_repeat 3 51 0 2 1439 356 71 18 0 chr9 112010925 112010981 -12065191 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1439 593 291 11 39 chr9 112011755 112012012 -12064160 - B4A SINE B4 0 292 1 2 1439 243 0 0 0 chr9 112012245 112012272 -12063900 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1439 200 111 28 0 chr9 112013003 112013039 -12063133 + (CAAT)n Simple_repeat Simple_repeat 1 37 0 2 1439 242 240 29 20 chr9 112013826 112013912 -12062260 + PB1D10 SINE Alu 28 115 -34 2 1439 750 257 18 32 chr9 112014235 112014452 -12061720 - B3 SINE B2 0 216 3 2 1439 435 333 9 0 chr9 112014689 112014797 -12061375 + ID_B1 SINE B4 90 198 -26 2 1439 326 274 0 21 chr9 112014809 112014906 -12061266 + Lx8 LINE L1 6955 7049 -424 2 1439 249 214 33 87 chr9 112014945 112015037 -12061135 + B3A SINE B2 7 93 -105 2 1439 23 0 0 0 chr9 112015090 112015113 -12061059 + AT_rich Low_complexity Low_complexity 1 23 0 3 1439 735 260 50 25 chr9 112015435 112015676 -12060496 + Lx8 LINE L1 6784 7030 -443 3 1439 468 290 94 58 chr9 112015756 112016031 -12060141 + Lx8 LINE L1 7187 7471 -2 3 1439 212 200 15 15 chr9 112016052 112016118 -12060054 + (CAGAGA)n Simple_repeat Simple_repeat 3 68 0 3 1439 574 95 74 0 chr9 112016121 112016269 -12059903 + GA-rich Low_complexity Low_complexity 2 160 0 3 1439 334 297 9 0 chr9 112016738 112016849 -12059323 + L1MD LINE L1 2817 2928 -3218 3 1439 321 272 84 56 chr9 112016947 112017161 -12059011 + L1MD LINE L1 2939 3158 -2988 3 1439 298 282 0 5 chr9 112017396 112017511 -12058661 + L1MD LINE L1 3358 3470 -2676 3 1439 571 252 116 0 chr9 112017523 112017678 -12058494 + B3A SINE B2 9 181 -17 3 1439 180 0 0 0 chr9 112017894 112017914 -12058258 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1439 247 303 0 0 chr9 112017918 112017984 -12058188 + L1M4 LINE L1 3606 3671 -2475 3 1439 433 275 94 18 chr9 112018327 112018497 -12057675 + B4A SINE B4 4 186 -106 3 1439 216 0 0 0 chr9 112019465 112019489 -12056683 + (TAA)n Simple_repeat Simple_repeat 1 24 0 3 1439 783 268 28 68 chr9 112020030 112020282 -12055890 - B4 SINE B4 0 292 51 4 1439 253 217 0 0 chr9 112020694 112020754 -12055418 + (CAT)n Simple_repeat Simple_repeat 1 60 0 4 1439 180 77 0 0 chr9 112020808 112020834 -12055338 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1439 477 0 0 0 chr9 112022531 112022584 -12053588 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1439 534 70 0 0 chr9 112022584 112022654 -12053518 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1439 1019 264 11 35 chr9 112022663 112022946 -12053226 - B4 SINE B4 -14 278 3 4 1439 349 250 69 56 chr9 112022960 112023104 -12053068 - B1F SINE Alu 0 149 4 4 1439 249 33 0 0 chr9 112023705 112023735 -12052437 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1439 449 262 174 37 chr9 112023794 112023984 -12052188 - B3 SINE B2 0 216 1 4 1439 453 375 16 42 chr9 112024039 112024231 -12051941 - B4A SINE B4 -103 189 3 4 1439 3172 40 0 0 chr9 112024513 112024891 -12051281 - L1Md_A LINE L1 -3 6579 6202 5 1439 411 253 11 0 chr9 112024968 112025055 -12051117 - RSINE1 SINE B4 -19 146 59 5 1439 1128 77 0 0 chr9 112026513 112026720 -12049452 + (TG)n Simple_repeat Simple_repeat 1 207 0 5 1439 1188 246 4 14 chr9 112026724 112026784 -12049388 - B4 SINE B4 -18 274 217 5 1439 186 43 0 0 chr9 112026784 112026807 -12049365 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 5 1439 1188 246 4 14 chr9 112026807 112027022 -12049150 - B4 SINE B4 -76 216 2 5 1439 213 128 0 71 chr9 112027604 112027646 -12048526 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1439 916 269 55 7 chr9 112028202 112028475 -12047697 - B4A SINE B4 -4 288 3 5 1439 194 208 19 0 chr9 112028733 112028786 -12047386 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1439 281 325 0 0 chr9 112028802 112028882 -12047290 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1439 317 68 0 0 chr9 112028882 112028926 -12047246 - HAL1-3A_ME LINE L1 -846 2012 1969 5 1439 307 336 69 14 chr9 112030807 112030952 -12045220 - Lx9 LINE L1 -1711 5933 5781 5 1439 235 292 65 33 chr9 112032346 112032438 -12043734 - ID_B1 SINE B4 -46 178 84 6 1439 296 200 0 0 chr9 112032637 112032702 -12043470 + Lx5 LINE L1 6986 7050 0 6 1439 675 236 21 47 chr9 112032753 112032944 -12043228 + B4A SINE B4 107 292 0 6 1439 231 264 0 52 chr9 112032944 112033040 -12043132 + (CATATA)n Simple_repeat Simple_repeat 1 91 0 6 1439 508 271 7 7 chr9 112033885 112034030 -12042142 + RSINE1 SINE B4 2 146 -19 6 1439 234 0 0 0 chr9 112034719 112034745 -12041427 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1439 417 324 146 12 chr9 112034858 112035105 -12041067 + B4A SINE B4 1 280 -12 6 1439 204 95 71 0 chr9 112035118 112035160 -12041012 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1439 393 277 35 18 chr9 112035337 112035451 -12040721 - RSINE1 SINE B4 -41 124 9 6 1439 1584 175 66 47 chr9 112035725 112036132 -12040040 + RMER10A LTR ERVL 1 415 -27 6 1439 619 309 24 0 chr9 112036482 112036650 -12039522 - B3A SINE B2 -25 173 2 7 1439 242 316 0 10 chr9 112036710 112036809 -12039363 + (TATG)n Simple_repeat Simple_repeat 1 98 0 7 1439 434 335 66 20 chr9 112036865 112037109 -12039063 - B4A SINE B4 -35 257 3 7 1439 264 186 0 0 chr9 112038589 112038648 -12037524 + CT-rich Low_complexity Low_complexity 2 60 0 7 1439 354 45 0 0 chr9 112039851 112039895 -12036277 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 7 1439 431 257 0 0 chr9 112040031 112040136 -12036036 + MTEa LTR MaLR 273 377 -2 7 1439 323 73 0 18 chr9 112041133 112041189 -12034983 + (TTTTTG)n Simple_repeat Simple_repeat 4 58 0 7 1439 516 29 0 14 chr9 112041189 112041260 -12034912 - B1_Mm SINE Alu 0 147 78 7 1439 400 280 0 20 chr9 112041346 112041543 -12034629 + GA-rich Low_complexity Low_complexity 1 193 0 7 1439 414 0 0 0 chr9 112041625 112041671 -12034501 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1439 498 361 39 20 chr9 112041759 112042115 -12034057 - L1MB7 LINE L1 -8 6176 5814 8 1439 727 323 79 49 chr9 112042125 112042516 -12033656 + Lx8 LINE L1 7068 7470 -3 8 1439 243 297 14 0 chr9 112043169 112043243 -12032929 + MER5A DNA MER1_type 45 119 -70 8 1439 22 0 0 0 chr9 112043825 112043847 -12032325 + AT_rich Low_complexity Low_complexity 1 22 0 8 1439 225 0 0 0 chr9 112043904 112043929 -12032243 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1439 405 266 15 30 chr9 112044712 112044844 -12031328 - B4 SINE B4 -28 264 135 8 1439 378 0 0 0 chr9 112049123 112049165 -12027007 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1439 464 265 34 0 chr9 112049177 112049294 -12026878 - RSINE1 SINE B4 -35 130 10 8 1439 635 86 73 6 chr9 112051247 112051411 -12024761 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 8 1439 222 330 0 33 chr9 112051675 112051766 -12024406 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 8 1439 571 268 0 94 chr9 112052949 112053130 -12023042 - RSINE1 SINE B4 0 165 2 9 1439 198 71 0 0 chr9 112053137 112053165 -12023007 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 9 1439 594 284 94 20 chr9 112053165 112053366 -12022806 - B4 SINE B4 -76 216 1 9 1439 358 327 90 54 chr9 112055075 112055544 -12020628 + MLT1F1 LTR MaLR 70 564 -5 9 1439 237 139 0 0 chr9 112057090 112057133 -12019039 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1439 837 324 17 3 chr9 112057277 112057565 -12018607 - B4A SINE B4 0 292 1 9 1439 26 0 0 0 chr9 112057573 112057599 -12018573 + AT_rich Low_complexity Low_complexity 1 26 0 9 1439 235 238 16 16 chr9 112058174 112058238 -12017934 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1439 400 242 0 13 chr9 112058252 112058407 -12017765 + (TG)n Simple_repeat Simple_repeat 2 154 0 9 1439 381 86 0 0 chr9 112058434 112058492 -12017680 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1439 201 74 0 0 chr9 112060407 112060434 -12015738 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 9 1439 273 221 43 14 chr9 112060732 112060801 -12015371 - ID2 SINE ID -9 74 4 9 1439 289 279 122 15 chr9 112060839 112060970 -12015202 - B1F1 SINE Alu -2 147 3 1 1439 1200 97 0 0 chr9 112062195 112062421 -12013751 + (TC)n Simple_repeat Simple_repeat 1 226 0 1 1439 678 130 0 0 chr9 112062421 112062529 -12013643 + (TTCC)n Simple_repeat Simple_repeat 3 110 0 1 1439 201 171 0 0 chr9 112062923 112062958 -12013214 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 1 1439 203 152 0 21 chr9 112064502 112064549 -12011623 + G-rich Low_complexity Low_complexity 5 50 0 1 1439 528 81 0 0 chr9 112064879 112064953 -12011219 + (CATA)n Simple_repeat Simple_repeat 3 76 0 1 1439 277 245 0 0 chr9 112065034 112065087 -12011085 - RSINE1 SINE B4 -6 159 107 1 1439 750 354 26 8 chr9 112065277 112065542 -12010630 - B4A SINE B4 -20 272 3 1 1439 537 30 0 0 chr9 112065706 112065773 -12010399 + (CAAAC)n Simple_repeat Simple_repeat 2 68 0 1 1439 387 0 0 0 chr9 112065773 112065816 -12010356 + (CAA)n Simple_repeat Simple_repeat 1 43 0 1 1440 702 150 0 0 chr9 112066644 112066764 -12009408 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 1440 227 250 12 23 chr9 112067621 112067686 -12008486 + Lx8 LINE L1 7387 7450 -23 1 1440 2365 162 42 10 chr9 112067686 112068092 -12008080 - MTC LTR MaLR 0 421 3 1 1440 227 250 12 23 chr9 112068092 112068112 -12008060 + Lx8 LINE L1 7451 7470 -3 1 1440 423 56 0 0 chr9 112068348 112068402 -12007770 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 1440 21 36 0 0 chr9 112068552 112068580 -12007592 + AT_rich Low_complexity Low_complexity 1 28 0 1 1440 354 45 0 0 chr9 112068660 112068704 -12007468 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1440 395 289 123 0 chr9 112068714 112068745 -12007427 - RSINE1 SINE B4 -35 130 100 1 1440 573 15 0 0 chr9 112068745 112068811 -12007361 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1440 395 289 123 0 chr9 112068811 112068893 -12007279 - RSINE1 SINE B4 -66 99 4 1 1440 207 88 0 0 chr9 112069265 112069299 -12006873 + (TTG)n Simple_repeat Simple_repeat 1 34 0 1 1440 1209 28 0 0 chr9 112069300 112069441 -12006731 - B1_Mus1 SINE Alu -7 141 1 1 1440 269 235 12 0 chr9 112070109 112070194 -12005978 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1440 858 262 5 9 chr9 112070288 112070504 -12005668 - B4 SINE B4 -69 223 9 1 1440 228 238 0 0 chr9 112070814 112070877 -12005295 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1 1440 398 164 15 0 chr9 112072065 112072132 -12004040 - B1F SINE Alu -29 120 53 1 1440 245 336 9 9 chr9 112072729 112072837 -12003335 + PB1D10 SINE Alu 2 109 -8 1 1440 240 303 13 38 chr9 112072879 112072958 -12003214 + ID2 SINE ID 6 82 -1 1 1440 616 170 58 44 chr9 112074143 112074307 -12001865 + RLTR20A2 LTR ERVK 10 200 -378 1 1440 463 221 42 81 chr9 112074356 112074424 -12001748 + RLTR20A2 LTR ERVK 401 487 -91 1 1440 387 0 0 0 chr9 112074424 112074467 -12001705 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1440 463 236 44 79 chr9 112074467 112074568 -12001604 + RLTR20A2 LTR ERVK 477 568 0 1 1440 429 339 0 71 chr9 112076179 112076376 -11999796 + B3A SINE B2 1 183 -15 1 1440 326 324 18 0 chr9 112078092 112078203 -11997969 - PB1D10 SINE Alu -4 113 1 1 1440 375 121 0 0 chr9 112078214 112078272 -11997900 + (CCTG)n Simple_repeat Simple_repeat 4 61 0 1 1440 245 320 40 0 chr9 112078286 112078361 -11997811 - ID4 SINE ID -4 79 2 1 1440 21 0 0 0 chr9 112080579 112080600 -11995572 + AT_rich Low_complexity Low_complexity 1 21 0 1 1440 186 43 0 0 chr9 112081826 112081849 -11994323 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1440 261 0 0 0 chr9 112082506 112082535 -11993637 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1440 199 104 20 20 chr9 112082844 112082893 -11993279 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1440 21 0 0 0 chr9 112083502 112083523 -11992649 + AT_rich Low_complexity Low_complexity 1 21 0 1 1440 24 0 0 0 chr9 112084995 112085019 -11991153 + AT_rich Low_complexity Low_complexity 1 24 0 1 1440 225 0 0 0 chr9 112085241 112085266 -11990906 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1 1440 730 306 43 29 chr9 112085469 112085525 -11990647 - B4 SINE B4 -12 280 224 1 1440 330 26 0 0 chr9 112085525 112085564 -11990608 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1440 730 306 43 29 chr9 112085564 112085783 -11990389 - B4 SINE B4 -69 223 3 1 1440 201 154 0 0 chr9 112086825 112086864 -11989308 + A-rich Low_complexity Low_complexity 4 42 0 1 1440 1176 84 6 11 chr9 112087808 112087989 -11988183 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1440 669 13 0 0 chr9 112088865 112088943 -11987229 + (CAG)n Simple_repeat Simple_repeat 3 80 0 1 1440 203 274 13 52 chr9 112089229 112089306 -11986866 + GA-rich Low_complexity Low_complexity 1 74 0 1 1440 189 0 0 0 chr9 112089903 112089924 -11986248 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 1440 26 30 0 0 chr9 112091603 112091636 -11984536 + AT_rich Low_complexity Low_complexity 1 33 0 1 1440 216 0 0 0 chr9 112092256 112092280 -11983892 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1440 21 0 0 0 chr9 112092391 112092412 -11983760 + AT_rich Low_complexity Low_complexity 1 21 0 1 1440 547 279 54 0 chr9 112092496 112092643 -11983529 - RSINE1 SINE B4 0 165 11 1 1440 1257 221 56 26 chr9 112094561 112094867 -11981305 + MTD LTR MaLR 18 332 -87 1 1440 2054 141 19 21 chr9 112094863 112095241 -11980931 + MTB_Mm LTR MaLR 5 381 -26 1 1440 568 258 0 0 chr9 112095671 112095803 -11980369 - RSINE1 SINE B4 -26 139 8 1 1440 937 92 30 0 chr9 112096343 112096507 -11979665 + (TC)n Simple_repeat Simple_repeat 2 170 0 1 1440 762 279 63 26 chr9 112096580 112096849 -11979323 - B4A SINE B4 -10 282 4 1 1440 297 66 16 32 chr9 112097101 112097164 -11979008 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1440 848 139 92 11 chr9 112097237 112097411 -11978761 - URR1B DNA MER1_type -3 222 35 1 1440 414 174 630 0 chr9 112098207 112098345 -11977827 - URR1A DNA MER1_type 0 226 2 1 1440 558 0 0 0 chr9 112098358 112098420 -11977752 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1440 329 279 33 53 chr9 112098551 112098720 -11977452 - B4 SINE B4 0 165 5 1 1440 280 279 41 90 chr9 112099017 112099139 -11977033 + L2a LINE L2 3293 3408 -18 1 1440 360 0 0 0 chr9 112099638 112099678 -11976494 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 1440 1176 63 13 0 chr9 112099679 112099838 -11976334 - B2_Mm2 SINE B2 -34 161 1 1 1440 819 266 4 83 chr9 112101490 112101744 -11974428 + B4A SINE B4 42 275 -17 1 1440 411 73 0 0 chr9 112102305 112102360 -11973812 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1440 227 203 126 0 chr9 112103059 112103124 -11973048 + B1_Mur4 SINE Alu 19 89 -31 1 1440 225 0 0 0 chr9 112103167 112103192 -11972980 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1440 907 286 28 28 chr9 112103225 112103516 -11972656 - B4A SINE B4 -1 291 1 1 1440 296 152 0 15 chr9 112104420 112104487 -11971685 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1440 195 42 0 0 chr9 112104518 112104542 -11971630 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1440 270 306 6 122 chr9 112104619 112104783 -11971389 - B4A SINE B4 -147 145 1 1 1440 264 220 308 0 chr9 112105765 112105856 -11970316 - B1F SINE Alu -30 119 1 1 1440 270 260 204 20 chr9 112106137 112106235 -11969937 + B4 SINE B4 2 117 -175 1 1440 239 254 0 0 chr9 112107169 112107224 -11968948 + RSINE1 SINE B4 3 57 -108 1 1440 296 188 58 29 chr9 112107301 112107438 -11968734 + (TA)n Simple_repeat Simple_repeat 1 141 0 1 1440 932 185 22 0 chr9 112108193 112108377 -11967795 + URR1B DNA MER1_type 35 222 -3 1 1440 331 329 0 34 chr9 112108670 112108818 -11967354 + RSINE1 SINE B4 4 146 -19 1 1440 1672 16 0 0 chr9 112108961 112109146 -11967026 + L1Md_T LINE L1 5402 5586 -297 1 1440 9075 8 0 5 chr9 112109146 112110147 -11966025 + L1Md_T LINE L1 5587 6582 0 1 1440 180 0 0 0 chr9 112110151 112110171 -11966001 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1440 285 51 0 0 chr9 112110245 112110284 -11965888 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1440 570 15 0 0 chr9 112110950 112111017 -11965155 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1440 678 355 19 4 chr9 112111028 112111299 -11964873 + B4 SINE B4 13 287 -5 1 1440 270 0 0 0 chr9 112111856 112111886 -11964286 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1440 378 0 0 0 chr9 112112189 112112231 -11963941 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1440 708 261 113 36 chr9 112112296 112112543 -11963629 - B4 SINE B4 -5 287 22 1 1440 1218 266 59 3 chr9 112112623 112112963 -11963209 + MTEa LTR MaLR 14 372 -7 1 1440 717 313 43 77 chr9 112113637 112113987 -11962185 - MTEa LTR MaLR 0 379 42 1 1440 264 149 0 0 chr9 112113996 112114043 -11962129 + (TTC)n Simple_repeat Simple_repeat 2 48 0 1 1440 1012 86 12 0 chr9 112114055 112114217 -11961955 + (TCC)n Simple_repeat Simple_repeat 3 166 0 1 1440 905 71 0 0 chr9 112114222 112114349 -11961823 - B1_Mus1 SINE Alu 0 148 22 1 1440 733 139 312 6 chr9 112114386 112114559 -11961613 - URR1A DNA MER1_type 0 226 1 1 1440 616 276 33 0 chr9 112115402 112115554 -11960618 + B3 SINE B2 55 211 -5 1 1440 180 77 0 0 chr9 112115715 112115741 -11960431 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 1440 437 260 189 22 chr9 112117409 112117594 -11958578 - ID_B1 SINE B4 -4 220 5 1 1440 198 0 0 0 chr9 112117711 112117733 -11958439 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1440 663 246 7 0 chr9 112118663 112118805 -11957367 + RSINE1 SINE B4 2 144 -21 1 1440 221 191 21 0 chr9 112118806 112118853 -11957319 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 1 1440 198 258 48 0 chr9 112120279 112120341 -11955831 + MIR SINE MIR 111 175 -87 1 1440 402 238 38 9 chr9 112120729 112120835 -11955337 + MER5A DNA MER1_type 4 112 -77 1 1440 213 290 10 10 chr9 112121352 112121453 -11954719 + (TA)n Simple_repeat Simple_repeat 1 101 0 2 1440 423 0 0 0 chr9 112122742 112122789 -11953383 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2 1440 540 73 0 0 chr9 112123635 112123717 -11952455 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1440 1158 48 0 0 chr9 112123717 112123861 -11952311 + (GA)n Simple_repeat Simple_repeat 2 146 0 2 1440 366 42 0 0 chr9 112124776 112124824 -11951348 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1440 305 296 139 110 chr9 112125600 112125805 -11950367 + B4A SINE B4 4 195 -97 2 1440 495 0 0 0 chr9 112125805 112125860 -11950312 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1440 305 296 139 110 chr9 112125860 112125935 -11950237 + B4A SINE B4 196 291 -1 2 1440 252 0 0 0 chr9 112126116 112126144 -11950028 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 2 1440 357 198 0 0 chr9 112126146 112126232 -11949940 + (CGTG)n Simple_repeat Simple_repeat 1 86 0 2 1440 257 218 39 0 chr9 112126240 112126318 -11949854 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 2 1440 1134 82 0 14 chr9 112127035 112127173 -11948999 + B1_Mus2 SINE Alu 2 139 -8 2 1440 363 60 0 0 chr9 112127173 112127223 -11948949 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 2 1440 251 71 24 0 chr9 112127223 112127265 -11948907 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1440 354 23 0 0 chr9 112127369 112127412 -11948760 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1440 333 0 0 0 chr9 112127412 112127448 -11948724 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1440 338 262 93 0 chr9 112128338 112128445 -11947727 + PB1D10 SINE Alu 1 117 0 2 1440 211 50 75 0 chr9 112128535 112128575 -11947597 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1440 676 221 68 52 chr9 112128596 112128787 -11947385 + B3 SINE B2 23 216 0 2 1440 1032 109 0 0 chr9 112129500 112129675 -11946497 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 1440 459 278 8 8 chr9 112129683 112129817 -11946355 - RSINE1 SINE B4 -23 142 9 2 1440 550 155 21 0 chr9 112131113 112131210 -11944962 - B3A SINE B2 -99 99 1 2 1440 23 0 0 0 chr9 112131827 112131850 -11944322 + AT_rich Low_complexity Low_complexity 1 23 0 2 1440 867 161 0 0 chr9 112132299 112132460 -11943712 + GA-rich Low_complexity Low_complexity 3 163 0 2 1440 198 0 0 0 chr9 112132458 112132480 -11943692 + (CAG)n Simple_repeat Simple_repeat 2 23 0 2 1440 231 36 0 0 chr9 112133684 112133712 -11942460 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1440 432 0 0 0 chr9 112135083 112135131 -11941041 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1440 219 114 0 0 chr9 112137133 112137168 -11939004 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 2 1440 689 37 67 7 chr9 112137467 112137602 -11938570 + (TC)n Simple_repeat Simple_repeat 1 143 0 2 1440 306 0 0 0 chr9 112139000 112139034 -11937138 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2 1440 198 0 0 0 chr9 112139082 112139104 -11937068 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1440 360 0 0 0 chr9 112139180 112139220 -11936952 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1440 443 287 23 23 chr9 112141608 112141740 -11934432 - B4A SINE B4 -4 288 157 2 1440 304 250 22 22 chr9 112141768 112141858 -11934314 - B4 SINE B4 -198 94 5 2 1440 378 42 0 0 chr9 112142280 112142328 -11933844 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1440 574 278 73 0 chr9 112142915 112143106 -11933066 - ID_B1 SINE B4 -19 205 1 2 1440 432 0 0 0 chr9 112143382 112143430 -11932742 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1440 442 222 10 10 chr9 112143430 112143530 -11932642 - RSINE1 SINE B4 -63 102 3 2 1440 186 103 0 0 chr9 112144457 112144486 -11931686 + (TTTTTA)n Simple_repeat Simple_repeat 1 29 0 2 1440 316 229 22 22 chr9 112145154 112145288 -11930884 + (TTATA)n Simple_repeat Simple_repeat 2 135 0 2 1440 1304 122 10 0 chr9 112145816 112146020 -11930152 - Lx2 LINE L1 -6 6991 6786 2 1440 572 256 33 91 chr9 112146723 112146933 -11929239 + B3A SINE B2 1 198 0 2 1440 691 279 21 25 chr9 112147201 112147440 -11928732 - ORR1E LTR MaLR -2 357 120 2 1440 245 350 10 10 chr9 112147818 112147919 -11928253 - Lx8 LINE L1 -138 7335 7235 2 1440 837 228 67 34 chr9 112148423 112148632 -11927540 - B3 SINE B2 0 216 1 2 1440 203 125 25 0 chr9 112148738 112148778 -11927394 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1440 21 0 0 0 chr9 112148896 112148917 -11927255 + AT_rich Low_complexity Low_complexity 1 21 0 2 1440 549 191 64 0 chr9 112148917 112149058 -11927114 - Lx9 LINE L1 0 7644 7495 2 1440 638 200 9 0 chr9 112149058 112149297 -11926875 + (TG)n Simple_repeat Simple_repeat 1 241 0 2 1440 580 134 180 8 chr9 112149298 112149426 -11926746 - Lx9 LINE L1 -162 7482 7333 2 1440 334 316 22 62 chr9 112149541 112149720 -11926452 - L1MEa LINE L1 -5197 873 702 2 1440 947 223 15 15 chr9 112150937 112151142 -11925030 + B3 SINE B2 6 210 -6 2 1440 220 229 57 0 chr9 112151991 112152061 -11924111 + B4 SINE B4 2 75 -217 2 1440 576 316 24 0 chr9 112152079 112152247 -11923925 + B4 SINE B4 119 290 -2 2 1440 414 69 0 0 chr9 112152254 112152312 -11923860 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1440 322 295 153 7 chr9 112152896 112153031 -11923141 + MLT1A0 LTR MaLR 55 211 -154 2 1440 307 281 39 46 chr9 112153031 112153184 -11922988 + B4 SINE B4 1 152 -140 2 1440 227 222 27 14 chr9 112153212 112153285 -11922887 + MTD LTR MaLR 346 419 0 2 1440 375 23 0 0 chr9 112153563 112153607 -11922565 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1440 241 341 11 0 chr9 112154182 112154270 -11921902 - L1M5 LINE L1 -3378 2768 2680 2 1440 537 264 27 41 chr9 112154568 112154714 -11921458 + RSINE1 SINE B4 22 165 0 2 1440 323 0 0 0 chr9 112154714 112154752 -11921420 + HAL1-3A_ME LINE L1 1985 2022 -836 2 1440 245 200 20 0 chr9 112154752 112154852 -11921320 + (CAGA)n Simple_repeat Simple_repeat 1 102 0 2 1440 402 21 0 0 chr9 112154865 112154912 -11921260 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2 1440 183 42 0 0 chr9 112154919 112154943 -11921229 + (CAGAGA)n Simple_repeat Simple_repeat 4 27 0 2 1440 497 263 31 13 chr9 112155076 112155290 -11920882 - L1M2 LINE L1 -710 5479 5263 2 1440 339 294 66 7 chr9 112155328 112155465 -11920707 - L1M2 LINE L1 -964 5179 5035 2 1440 998 142 41 0 chr9 112155467 112155636 -11920536 - URR1B DNA MER1_type 0 225 50 2 1440 764 297 80 23 chr9 112155671 112156098 -11920074 - L1M2 LINE L1 -1110 5033 4583 2 1440 1138 216 95 108 chr9 112156154 112156223 -11919949 - ORR1D1 LTR MaLR 0 374 307 2 1440 4731 122 14 6 chr9 112156223 112156930 -11919242 + Lx4B LINE L1 6342 7054 -4 2 1440 1138 216 95 108 chr9 112156930 112157081 -11919091 - ORR1D1 LTR MaLR -68 306 171 2 1440 336 24 0 0 chr9 112157081 112157122 -11919050 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1440 1138 216 95 108 chr9 112157122 112157279 -11918893 - ORR1D1 LTR MaLR -204 170 2 2 1440 1638 258 77 66 chr9 112157316 112158138 -11918034 - L1M2 LINE L1 -1632 4511 3681 2 1440 303 225 45 26 chr9 112158138 112158412 -11917760 + CT-rich Low_complexity Low_complexity 1 279 0 2 1440 298 289 75 19 chr9 112158419 112158612 -11917560 - L1M2 LINE L1 -2455 3688 3490 2 1440 376 348 63 28 chr9 112158972 112159226 -11916946 + Zaphod DNA Tip100 118 380 -3651 2 1440 318 67 0 0 chr9 112159559 112159604 -11916568 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1440 28 91 0 0 chr9 112159701 112159778 -11916394 + AT_rich Low_complexity Low_complexity 1 77 0 2 1440 342 330 47 57 chr9 112160553 112160746 -11915426 - LTR80B LTR ERVL -317 267 77 2 1440 257 261 100 42 chr9 112161182 112161302 -11914870 + MER117 DNA MER1_type 37 163 -34 2 1440 288 311 109 35 chr9 112161563 112161793 -11914379 + L1M4 LINE L1 2676 2922 -3224 2 1440 790 250 70 62 chr9 112161836 112162092 -11914080 + B4 SINE B4 35 292 0 2 1440 1387 25 0 0 chr9 112162395 112162555 -11913617 - L1Md_F2 LINE L1 -223 6359 6200 2 1440 1487 49 0 0 chr9 112162555 112162738 -11913434 + L1Md_T LINE L1 6400 6582 0 2 1440 822 102 22 11 chr9 112162848 112163026 -11913146 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1440 400 243 62 28 chr9 112163043 112163187 -11912985 + RMER15 LTR ERVL 427 575 0 2 1440 428 369 77 39 chr9 112163187 112163523 -11912649 - LTR16A LTR ERVL -53 398 50 2 1440 227 306 0 0 chr9 112163792 112163854 -11912318 - MIRb SINE MIR -7 261 200 2 1440 248 272 0 42 chr9 112164094 112164202 -11911970 - MIR SINE MIR -2 266 159 2 1440 201 133 0 0 chr9 112164299 112164329 -11911843 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1440 320 316 93 23 chr9 112165761 112165975 -11910197 - RMER15 LTR ERVL 0 575 347 2 1440 312 281 49 62 chr9 112166394 112166538 -11909634 + MLT1H LTR MaLR 382 523 -26 2 1440 476 330 20 41 chr9 112166671 112166867 -11909305 + MTD LTR MaLR 9 200 -219 2 1440 893 259 11 0 chr9 112166877 112167066 -11909106 + B3 SINE B2 1 191 -25 2 1440 393 222 236 8 chr9 112167106 112167121 -11909051 + MTD LTR MaLR 207 224 -195 2 1440 951 103 0 0 chr9 112167121 112167267 -11908905 + (GGA)n Simple_repeat Simple_repeat 3 148 0 2 1440 393 222 236 8 chr9 112167267 112167378 -11908794 + MTD LTR MaLR 225 361 -58 2 1440 56 0 0 0 chr9 112167378 112167434 -11908738 + AT_rich Low_complexity Low_complexity 1 56 0 2 1440 483 297 36 130 chr9 112167786 112168200 -11907972 + MTE2a LTR MaLR 5 379 0 2 1440 548 296 48 18 chr9 112168368 112168393 -11907779 + B3A SINE B2 1 25 -173 2 1440 1645 193 43 32 chr9 112168393 112168763 -11907409 - ORR1D1 LTR MaLR 0 374 1 2 1440 548 300 48 28 chr9 112168763 112168955 -11907217 + B3A SINE B2 26 215 -1 2 1440 315 0 0 0 chr9 112169636 112169671 -11906501 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1440 808 64 35 0 chr9 112169935 112170076 -11906096 + (TA)n Simple_repeat Simple_repeat 2 147 0 2 1440 1893 326 50 16 chr9 112170318 112171244 -11904928 + Lx8 LINE L1 6269 7225 -248 2 1440 627 98 35 9 chr9 112171318 112171431 -11904741 + (TATG)n Simple_repeat Simple_repeat 3 118 0 2 1440 33 0 0 0 chr9 112171612 112171645 -11904527 + AT_rich Low_complexity Low_complexity 1 33 0 2 1440 21 0 0 0 chr9 112172192 112172213 -11903959 + AT_rich Low_complexity Low_complexity 1 21 0 2 1440 386 340 71 26 chr9 112172330 112172599 -11903573 + B4A SINE B4 2 282 -10 2 1440 330 115 0 0 chr9 112172629 112172690 -11903482 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1440 522 165 0 0 chr9 112173740 112173843 -11902329 + (TGGA)n Simple_repeat Simple_repeat 1 103 0 2 1440 180 0 0 0 chr9 112174141 112174161 -11902011 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1440 188 280 130 26 chr9 112174580 112174657 -11901515 + MIRb SINE MIR 47 131 -137 3 1440 219 173 0 0 chr9 112174657 112174709 -11901463 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1440 593 306 42 97 chr9 112174771 112174988 -11901184 - B3 SINE B2 -6 210 6 3 1440 659 75 11 0 chr9 112175659 112175753 -11900419 + (TCC)n Simple_repeat Simple_repeat 3 97 0 3 1440 180 0 0 0 chr9 112175919 112175939 -11900233 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 3 1440 423 338 43 14 chr9 112176056 112176266 -11899906 + B3 SINE B2 1 216 0 3 1440 420 97 0 0 chr9 112176291 112176353 -11899819 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1440 290 349 35 16 chr9 112176747 112177120 -11899052 + L1M2 LINE L1 2129 2508 -3635 3 1440 1194 248 62 43 chr9 112177224 112177548 -11898624 - MTD LTR MaLR -5 414 85 3 1440 629 239 7 47 chr9 112177526 112177675 -11898497 - MTD LTR MaLR -272 147 5 3 1440 381 22 0 0 chr9 112177676 112177722 -11898450 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1440 480 331 95 19 chr9 112177732 112178366 -11897806 + L1M2 LINE L1 2673 3354 -2789 3 1440 3332 205 91 9 chr9 112180119 112180990 -11895182 + Lx9 LINE L1 6691 7632 -12 3 1440 2222 302 72 20 chr9 112181018 112181251 -11894921 + Lx8 LINE L1 6386 6642 -831 3 1440 1301 40 6 6 chr9 112181251 112181426 -11894746 - L1Md_F2 LINE L1 0 6582 6408 3 1440 2222 302 72 20 chr9 112181426 112182221 -11893951 + Lx8 LINE L1 6643 7467 -6 3 1440 27 73 0 0 chr9 112182284 112182339 -11893833 + AT_rich Low_complexity Low_complexity 1 55 0 3 1440 294 386 13 33 chr9 112183077 112183227 -11892945 + MIR SINE MIR 7 153 -109 3 1440 297 255 89 71 chr9 112183239 112183463 -11892709 + L1MC LINE L1 4182 4409 -1737 3 1440 1423 176 171 7 chr9 112183524 112183822 -11892350 + ORR1B1 LTR MaLR 48 394 0 3 1440 303 85 0 0 chr9 112183822 112183869 -11892303 + ORR1B1-int LTR MaLR 1 47 -1745 3 1440 509 262 8 16 chr9 112183873 112184001 -11892171 + B4 SINE B4 166 292 0 3 1440 189 280 0 0 chr9 112184164 112184271 -11891901 + (CA)n Simple_repeat Simple_repeat 1 107 0 3 1440 229 312 0 15 chr9 112184381 112184446 -11891726 + MTC LTR MaLR 344 407 -14 3 1440 244 182 18 0 chr9 112184793 112184848 -11891324 + L1MA6 LINE L1 6112 6167 -133 3 1440 304 314 70 55 chr9 112185150 112185349 -11890823 + L1M2 LINE L1 4258 4459 -1684 3 1440 741 268 5 23 chr9 112185421 112185635 -11890537 + B3 SINE B2 4 213 -3 3 1440 313 322 86 0 chr9 112185809 112186042 -11890130 + L1M2 LINE L1 5134 5386 -757 3 1440 25 0 0 0 chr9 112187731 112187756 -11888416 + AT_rich Low_complexity Low_complexity 1 25 0 3 1440 783 131 131 0 chr9 112187756 112187886 -11888286 - B1_Mus1 SINE Alu 0 148 2 3 1440 405 0 0 0 chr9 112188055 112188100 -11888072 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1440 662 311 93 0 chr9 112188114 112188297 -11887875 - B4 SINE B4 -20 272 73 3 1440 489 141 35 0 chr9 112188295 112188380 -11887792 + ORR1C1 LTR MaLR 291 378 0 3 1440 324 48 0 0 chr9 112188705 112188747 -11887425 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1440 204 345 0 0 chr9 112188820 112188878 -11887294 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1440 502 274 40 0 chr9 112189803 112189927 -11886245 - RSINE1 SINE B4 -35 130 2 3 1440 401 340 92 30 chr9 112191350 112191701 -11884471 - MLT1F LTR MaLR -2 546 121 3 1440 465 19 0 0 chr9 112192045 112192099 -11884073 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1440 450 0 0 0 chr9 112192099 112192148 -11884024 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1440 195 204 0 0 chr9 112192618 112192662 -11883510 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 3 1440 264 59 0 0 chr9 112192790 112192824 -11883348 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1440 634 337 25 47 chr9 112193206 112193230 -11882942 + B4A SINE B4 2 21 -271 3 1440 1752 192 107 13 chr9 112193230 112193615 -11882557 - MTC LTR MaLR 0 421 1 3 1440 634 337 25 47 chr9 112193615 112193864 -11882308 + B4A SINE B4 22 269 -23 3 1440 486 0 0 0 chr9 112193889 112193943 -11882229 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1440 523 269 29 15 chr9 112194110 112194246 -11881926 - B1F1 SINE Alu -7 142 5 3 1440 232 167 16 62 chr9 112195927 112195991 -11880181 - L1MA9 LINE L1 -1 6311 6251 3 1440 431 317 80 65 chr9 112196020 112196357 -11879815 - ORR1E LTR MaLR 0 359 18 3 1440 311 335 78 31 chr9 112196384 112196704 -11879468 - L1MA9 LINE L1 -111 7161 6827 3 1440 1148 269 154 16 chr9 112196709 112197410 -11878762 - L1MA9 LINE L1 -940 6163 5366 3 22 1118 56 0 37 chr9 112197475 112197662 -11878510 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1441 781 62 0 18 chr9 112197667 112197781 -11878391 + (TCC)n Simple_repeat Simple_repeat 3 114 0 3 1441 1702 257 45 2 chr9 112197974 112198376 -11877796 + MTD LTR MaLR 1 419 0 3 1441 226 306 12 0 chr9 112198518 112198603 -11877569 - L1MA9 LINE L1 -2147 4956 4871 3 1441 320 328 26 21 chr9 112198743 112198933 -11877239 - L1MA9 LINE L1 -5378 1652 1462 3 1441 387 0 0 0 chr9 112199186 112199229 -11876943 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1441 511 81 0 23 chr9 112199229 112199317 -11876855 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 1441 339 289 85 25 chr9 112199317 112199516 -11876656 - L1MA9 LINE L1 -6819 211 1 3 1441 1068 131 0 4 chr9 112199991 112200251 -11875921 + (TG)n Simple_repeat Simple_repeat 1 259 0 3 1441 702 244 11 48 chr9 112200251 112200440 -11875732 - B3A SINE B2 -16 182 1 3 1441 181 255 0 0 chr9 112201791 112201838 -11874334 - MIRc SINE MIR -101 167 121 3 1441 6701 57 8 0 chr9 112202799 112203683 -11872489 - L1Md_F2 LINE L1 0 6582 5692 3 1441 297 359 0 86 chr9 112203811 112203939 -11872233 + B4A SINE B4 3 119 -173 3 1441 231 348 11 0 chr9 112204088 112204180 -11871992 + G-rich Low_complexity Low_complexity 6 98 0 3 1441 1143 283 50 12 chr9 112204755 112205098 -11871074 + ORR1E LTR MaLR 4 359 0 3 1441 567 0 0 0 chr9 112205538 112205601 -11870571 + (GA)n Simple_repeat Simple_repeat 1 63 0 3 1441 421 279 49 28 chr9 112206737 112206881 -11869291 + B1_Mur2 SINE Alu 3 149 0 3 1441 582 322 57 0 chr9 112207512 112207689 -11868483 - B3A SINE B2 -11 187 1 3 1441 1843 173 14 31 chr9 112208386 112208803 -11867369 - RMER17C LTR ERVK 0 410 1 3 1441 414 0 0 0 chr9 112208946 112208992 -11867180 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1441 814 297 23 38 chr9 112209032 112209295 -11866877 + B4 SINE B4 36 292 0 3 1441 387 0 0 0 chr9 112209297 112209340 -11866832 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1441 194 116 23 0 chr9 112210917 112210960 -11865212 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1441 220 315 70 46 chr9 112211084 112211284 -11864888 + L2c LINE L2 3193 3387 0 3 1441 341 338 48 21 chr9 112211792 112211937 -11864235 + ID_B1 SINE B4 16 164 -60 3 1441 572 186 311 0 chr9 112213626 112213793 -11862379 + ID_B1 SINE B4 3 221 -3 3 1441 441 259 28 0 chr9 112214145 112214253 -11861919 - Lx8 LINE L1 -887 6586 6476 3 1441 370 287 44 95 chr9 112215043 112215201 -11860971 + B4 SINE B4 143 292 0 3 1441 312 167 0 0 chr9 112215206 112215254 -11860918 + HAL1-3A_ME LINE L1 1976 2023 -835 3 1441 411 21 0 0 chr9 112215263 112215311 -11860861 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1441 504 0 0 0 chr9 112215311 112215366 -11860806 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1441 248 145 32 0 chr9 112217424 112217486 -11858686 - Lx9 LINE L1 -8 7636 7573 3 1441 636 240 38 11 chr9 112217507 112217692 -11858480 + Lx9 LINE L1 7250 7439 -205 3 1441 634 342 28 21 chr9 112217712 112217999 -11858173 + B4A SINE B4 2 290 -2 3 1441 754 306 21 25 chr9 112218682 112218923 -11857249 - B4A SINE B4 -22 270 31 3 1441 202 191 73 0 chr9 112219165 112219233 -11856939 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1441 281 319 0 0 chr9 112219305 112219374 -11856798 + polypyrimidine Low_complexity Low_complexity 6 74 0 3 1441 393 274 95 0 chr9 112219379 112219474 -11856698 - PB1D10 SINE Alu -8 109 6 3 1441 23 33 0 0 chr9 112219485 112219515 -11856657 + AT_rich Low_complexity Low_complexity 1 30 0 3 1441 305 311 18 36 chr9 112219627 112219737 -11856435 + MTEa LTR MaLR 265 372 -7 3 1441 750 225 15 40 chr9 112220630 112220829 -11855343 - B3A SINE B2 -1 197 4 3 1441 405 311 145 23 chr9 112221585 112221702 -11854470 - Lx8 LINE L1 0 7473 7329 3 1441 474 18 0 0 chr9 112221702 112221757 -11854415 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1441 405 311 145 23 chr9 112221757 112221942 -11854230 - Lx8 LINE L1 -145 7328 7134 3 1441 331 298 8 34 chr9 112222079 112222197 -11853975 - PB1D7 SINE Alu -5 115 1 3 1441 477 0 0 0 chr9 112222351 112222404 -11853768 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3 1441 345 357 75 57 chr9 112222961 112223240 -11852932 + B4 SINE B4 9 292 0 3 1441 226 250 52 13 chr9 112223484 112223561 -11852611 - L2b LINE L2 -218 3157 3078 3 1441 346 316 75 0 chr9 112223612 112223745 -11852427 + B1F1 SINE Alu 7 149 0 3 1441 216 228 0 0 chr9 112223745 112223802 -11852370 + GA-rich Low_complexity Low_complexity 2 58 0 3 1441 24 0 0 0 chr9 112224025 112224049 -11852123 + AT_rich Low_complexity Low_complexity 1 24 0 3 1441 221 255 64 0 chr9 112224321 112224368 -11851804 + B1F1 SINE Alu 1 50 -99 3 1441 541 238 113 113 chr9 112224369 112224511 -11851661 - RLTR31B_Mm LTR ERVK 0 561 420 3 1441 412 138 0 0 chr9 112224534 112224599 -11851573 - ORR1E LTR MaLR 0 379 315 3 1441 269 219 34 0 chr9 112224602 112224724 -11851448 + CT-rich Low_complexity Low_complexity 1 126 0 3 1441 343 260 62 88 chr9 112224726 112224886 -11851286 - HAL1-3A_ME LINE L1 -419 2439 2284 3 1441 929 312 10 22 chr9 112224894 112225170 -11851002 - ORR1E LTR MaLR -83 287 20 3 1441 829 256 52 45 chr9 112225234 112225520 -11850652 + B4A SINE B4 1 288 -4 3 1441 504 32 0 0 chr9 112225546 112225608 -11850564 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 3 1441 24 0 0 0 chr9 112225776 112225800 -11850372 + AT_rich Low_complexity Low_complexity 1 24 0 3 1441 1105 89 0 7 chr9 112225884 112226031 -11850141 + B1_Mus2 SINE Alu 2 147 0 3 1441 423 0 0 0 chr9 112226033 112226080 -11850092 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 4 1441 596 130 9 0 chr9 112226080 112226195 -11849977 + (GAAAA)n Simple_repeat Simple_repeat 2 117 0 4 1441 30 0 0 0 chr9 112226689 112226719 -11849453 + AT_rich Low_complexity Low_complexity 1 30 0 4 1441 488 90 0 25 chr9 112226719 112226799 -11849373 + (CCCCCT)n Simple_repeat Simple_repeat 2 79 0 4 1441 565 338 9 3 chr9 112226800 112226977 -11849195 - B3A SINE B2 -13 203 27 4 1441 228 244 0 0 chr9 112227477 112227518 -11848654 - B3A SINE B2 -157 41 1 4 1441 733 249 71 28 chr9 112227893 112228104 -11848068 - ID_B1 SINE B4 -2 222 3 4 1441 719 125 15 23 chr9 112229291 112229422 -11846750 - Lx2A LINE L1 -11 6997 6868 4 1441 375 23 0 0 chr9 112229664 112229708 -11846464 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1441 784 260 62 48 chr9 112229836 112230046 -11846126 - B3 SINE B2 -3 213 1 4 1441 206 266 16 0 chr9 112230157 112230221 -11845951 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1441 2006 149 23 11 chr9 112230477 112230523 -11845649 + RLTR15 LTR ERVK 3 48 -311 4 1441 180 0 0 0 chr9 112230523 112230543 -11845629 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1441 2006 149 23 11 chr9 112230543 112230849 -11845323 + RLTR15 LTR ERVK 49 358 -1 4 1441 444 241 18 53 chr9 112231284 112231398 -11844774 + PB1D10 SINE Alu 1 110 -7 4 1441 21 0 0 0 chr9 112231437 112231458 -11844714 + AT_rich Low_complexity Low_complexity 1 21 0 4 1441 362 308 65 0 chr9 112231725 112231832 -11844340 + ID_B1 SINE B4 108 221 -3 4 1441 3907 167 24 14 chr9 112231887 112232549 -11843623 - RMER19B LTR ERVK 0 902 234 4 1441 4389 14 2 0 chr9 112232549 112233041 -11843131 + MT2_Mm LTR ERVL 1 493 0 4 1441 45772 15 0 0 chr9 112233041 112238400 -11837772 + MERVL-int LTR ERVL 1 5360 -125 4 1441 390 167 46 35 chr9 112238400 112238487 -11837685 + ORR1A3-int LTR MaLR 553 640 -1323 4 1441 302 0 0 0 chr9 112238487 112238525 -11837647 + MERVL-int LTR ERVL 5448 5485 0 4 1441 4365 16 2 0 chr9 112238525 112239017 -11837155 + MT2_Mm LTR ERVL 1 493 0 4 1441 1481 168 0 4 chr9 112239017 112239256 -11836916 - RMER19B LTR ERVK -664 238 1 4 1441 2017 134 0 7 chr9 112239742 112240049 -11836123 - RLTR10E LTR ERVK -6 305 1 4 1441 387 236 28 9 chr9 112240393 112240509 -11835663 - Lx9 LINE L1 -460 7184 7089 4 1441 21 0 0 0 chr9 112240745 112240766 -11835406 + AT_rich Low_complexity Low_complexity 1 21 0 4 1441 673 318 125 24 chr9 112240837 112241085 -11835087 - B4 SINE B4 -19 273 1 4 1441 309 361 11 71 chr9 112241333 112241515 -11834657 + MER5A DNA MER1_type 14 184 -5 4 1441 382 260 169 60 chr9 112241670 112241854 -11834318 - RMER15 LTR ERVL -22 553 350 4 1441 340 278 30 45 chr9 112241980 112242112 -11834060 - RMER15 LTR ERVL -445 130 1 4 1441 419 323 54 74 chr9 112242114 112242358 -11833814 + B4A SINE B4 17 272 -20 4 1441 1310 284 57 6 chr9 112242781 112243135 -11833037 - MTEa LTR MaLR -7 372 1 4 1441 539 275 30 0 chr9 112243876 112244007 -11832165 + ID_B1 SINE B4 82 216 -8 4 1441 276 321 24 0 chr9 112244017 112244101 -11832071 + B4 SINE B4 2 87 -205 4 1441 342 67 0 0 chr9 112244160 112244205 -11831967 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 1441 423 0 0 0 chr9 112244285 112244332 -11831840 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1441 5979 131 19 9 chr9 112244332 112245473 -11830699 + Lx4A LINE L1 5458 6615 -443 4 1441 372 22 0 0 chr9 112245733 112245778 -11830394 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1441 302 250 13 0 chr9 112245778 112245854 -11830318 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1441 459 0 0 0 chr9 112246301 112246352 -11829820 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1441 333 281 101 29 chr9 112247203 112247342 -11828830 + MLT1A0 LTR MaLR 217 365 0 4 1441 354 80 0 0 chr9 112248628 112248678 -11827494 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1441 1340 268 44 19 chr9 112248804 112249183 -11826989 + MTD LTR MaLR 3 419 0 4 1441 857 147 160 45 chr9 112250148 112250348 -11825824 - URR1B DNA MER1_type -2 223 1 4 1441 644 263 45 11 chr9 112250380 112250557 -11825615 + B3A SINE B2 5 187 -11 4 1441 21 0 0 0 chr9 112250583 112250604 -11825568 + AT_rich Low_complexity Low_complexity 1 21 0 4 1441 692 265 58 23 chr9 112251157 112251331 -11824841 + B3 SINE B2 31 210 -6 4 1441 22 0 0 0 chr9 112251341 112251363 -11824809 + AT_rich Low_complexity Low_complexity 1 22 0 4 1441 527 351 78 30 chr9 112251428 112251760 -11824412 + MLT2D LTR ERVL 3 350 -64 4 1441 180 0 0 0 chr9 112251760 112251780 -11824392 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1441 360 183 0 31 chr9 112252163 112252259 -11823913 + (CATA)n Simple_repeat Simple_repeat 3 95 0 4 1441 309 51 0 0 chr9 112252355 112252394 -11823778 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1441 1321 241 116 26 chr9 112252398 112252778 -11823394 - MTD LTR MaLR 0 419 6 4 1441 242 317 42 0 chr9 112252995 112253162 -11823010 + L1ME4a LINE L1 5949 6122 -2 4 1441 324 70 0 0 chr9 112253424 112253467 -11822705 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1441 546 140 0 0 chr9 112253613 112253713 -11822459 + (CA)n Simple_repeat Simple_repeat 1 100 0 4 1441 275 316 8 58 chr9 112254518 112254639 -11821533 + PB1D10 SINE Alu 3 117 0 4 1441 339 49 66 0 chr9 112254648 112254709 -11821463 + (GAAA)n Simple_repeat Simple_repeat 3 67 0 4 1441 187 316 0 0 chr9 112254984 112255041 -11821131 + MIR SINE MIR 87 143 -119 4 1441 786 272 35 142 chr9 112256168 112256592 -11819580 + MTE2b LTR MaLR 1 379 0 4 1441 4936 33 2 0 chr9 112256848 112257430 -11818742 - L1Md_T LINE L1 -4 6578 5996 4 1441 3296 27 0 0 chr9 112257430 112257878 -11818294 + L1Md_T LINE L1 5544 5991 -591 4 1441 470 264 28 0 chr9 112257886 112257992 -11818180 - PB1D10 SINE Alu -7 110 2 4 1441 414 0 0 0 chr9 112259255 112259301 -11816871 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1441 1272 294 74 37 chr9 112259391 112259906 -11816266 + RMER5 LTR ERV1 1 534 0 4 1441 300 277 167 69 chr9 112260045 112260189 -11815983 + B3 SINE B2 1 123 -75 4 1441 1053 49 0 112 chr9 112260189 112260349 -11815823 - B1_Mus1 SINE Alu -5 143 2 4 1441 300 315 0 101 chr9 112260349 112260436 -11815736 + B3 SINE B2 120 206 -10 4 1441 188 67 33 0 chr9 112260497 112260527 -11815645 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1441 367 198 49 12 chr9 112260570 112260652 -11815520 - B4A SINE B4 -22 270 186 4 1441 261 392 0 27 chr9 112260664 112260774 -11815398 - B4A SINE B4 -157 135 29 4 1441 264 205 81 46 chr9 112260814 112260901 -11815271 - PB1D10 SINE Alu -6 111 22 4 1441 542 257 15 7 chr9 112260911 112261048 -11815124 - B1F SINE Alu -9 140 3 4 1441 435 125 0 0 chr9 112261914 112261986 -11814186 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1441 436 337 6 0 chr9 112262301 112262479 -11813693 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1441 254 333 7 7 chr9 112262500 112262639 -11813533 + (CA)n Simple_repeat Simple_repeat 2 140 0 4 1441 28 29 0 0 chr9 112263239 112263274 -11812898 + AT_rich Low_complexity Low_complexity 1 35 0 4 1441 335 293 5 147 chr9 112263356 112263560 -11812612 + L1MA8 LINE L1 5119 5293 -850 4 1441 290 259 69 12 chr9 112263685 112263786 -11812386 + ID4 SINE ID 9 113 -39 4 1441 975 239 132 12 chr9 112263863 112264174 -11811998 - ORR1D1 LTR MaLR -4 370 1 4 1441 348 280 76 25 chr9 112264385 112264583 -11811589 + L1MA8 LINE L1 5713 5920 -371 4 1441 843 285 72 78 chr9 112264589 112264950 -11811222 - ORR1E LTR MaLR 0 359 1 4 1441 208 171 0 24 chr9 112265292 112265334 -11810838 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 4 1441 333 0 0 0 chr9 112265358 112265395 -11810777 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1441 431 290 90 60 chr9 112265504 112265772 -11810400 + B4A SINE B4 1 276 -16 4 1441 550 336 102 20 chr9 112266267 112266513 -11809659 - RMER5 LTR ERV1 -236 298 33 4 1441 875 273 127 107 chr9 112266578 112267320 -11808852 - Charlie5 DNA MER1_type -426 2198 1442 4 1441 634 211 15 59 chr9 112267422 112267558 -11808614 - B4 SINE B4 -68 224 95 4 1441 609 14 0 0 chr9 112267569 112267639 -11808533 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1441 1491 297 56 36 chr9 112268112 112269102 -11807070 - Lx7 LINE L1 -1672 5972 4943 4 1441 226 278 0 49 chr9 112269403 112269505 -11806667 - L1MA6 LINE L1 -20 6280 6184 4 1441 335 255 41 31 chr9 112269620 112269717 -11806455 - PB1D7 SINE Alu -9 111 11 4 1441 4152 206 72 19 chr9 112269894 112270872 -11805300 - RMER1B Other Other -37 1029 1 4 1441 288 0 0 0 chr9 112271046 112271078 -11805094 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1441 575 115 31 0 chr9 112271078 112271208 -11804964 + (TA)n Simple_repeat Simple_repeat 2 135 0 4 1441 21 71 0 0 chr9 112271343 112271385 -11804787 + AT_rich Low_complexity Low_complexity 1 42 0 4 1441 213 154 0 0 chr9 112271393 112271432 -11804740 + GA-rich Low_complexity Low_complexity 1 39 0 4 1441 393 75 0 0 chr9 112271424 112271477 -11804695 + (GGA)n Simple_repeat Simple_repeat 3 55 0 4 1441 645 312 21 12 chr9 112271547 112271757 -11804415 - B3A SINE B2 -13 203 1 4 1441 786 351 60 24 chr9 112271759 112272261 -11803911 - Charlie5 DNA MER1_type -2104 520 1 4 1441 672 293 0 6 chr9 112272387 112272552 -11803620 + RSINE1 SINE B4 2 165 0 4 1441 436 292 31 34 chr9 112272618 112272767 -11803405 + B1F SINE Alu 5 150 0 4 1441 852 302 141 19 chr9 112272785 112273302 -11802870 + L1MC LINE L1 2884 3463 -2683 4 1441 250 288 66 66 chr9 112273650 112273877 -11802295 + L1MD LINE L1 3947 4173 -1973 4 1441 210 164 0 0 chr9 112273947 112274002 -11802170 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 4 1441 340 216 26 26 chr9 112274005 112274081 -11802091 - RSINE1 SINE B4 0 165 90 4 1441 464 283 127 11 chr9 112274125 112274479 -11801693 + L1MC LINE L1 4299 4693 -1453 4 1441 411 355 48 33 chr9 112274606 112274816 -11801356 - Tigger5 DNA MER2_type -2183 223 11 4 1441 1162 241 25 16 chr9 112274863 112275230 -11800942 + L1MC LINE L1 4725 5094 -1052 4 1441 317 339 107 57 chr9 112275752 112276190 -11799982 + L1M5 LINE L1 4776 5235 -911 4 1441 481 255 10 0 chr9 112276801 112276903 -11799269 + RSINE1 SINE B4 51 153 -12 4 1441 2403 238 52 39 chr9 112276941 112278056 -11798116 + L1_Mus1 LINE L1 270 1205 -5433 4 1441 29574 102 14 3 chr9 112278055 112283517 -11792655 + L1_Mus1 LINE L1 1073 6565 -2 4 1441 244 237 0 0 chr9 112283961 112284020 -11792152 + T-rich Low_complexity Low_complexity 1 59 0 4 1441 540 185 16 25 chr9 112284020 112284142 -11792030 - B1_Mur3 SINE Alu 0 149 29 5 1441 23 68 0 0 chr9 112285259 112285303 -11790869 + AT_rich Low_complexity Low_complexity 1 44 0 5 1441 21 0 0 0 chr9 112286164 112286185 -11789987 + AT_rich Low_complexity Low_complexity 1 21 0 5 1441 248 130 22 0 chr9 112287724 112287770 -11788402 + CT-rich Low_complexity Low_complexity 1 47 0 5 1441 455 285 24 31 chr9 112287788 112287915 -11788257 - B3A SINE B2 -68 130 5 5 1441 295 289 9 19 chr9 112288063 112288169 -11788003 - HAL1b LINE L1 -21 1988 1884 5 1441 407 277 8 51 chr9 112288441 112288559 -11787613 + ID_B1 SINE B4 78 190 -34 5 1441 390 21 0 0 chr9 112288687 112288734 -11787438 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1441 572 226 126 10 chr9 112288734 112288940 -11787232 - Lx9 LINE L1 -166 7478 7249 5 1441 438 286 37 84 chr9 112288955 112289146 -11787026 - B4 SINE B4 -107 185 4 5 1441 1145 75 0 0 chr9 112289631 112289777 -11786395 + B1_Mus2 SINE Alu 1 146 -1 5 1441 380 293 43 36 chr9 112290348 112290486 -11785686 - B4 SINE B4 -152 140 2 5 1441 229 296 96 0 chr9 112290490 112290615 -11785557 - L1M5 LINE L1 -469 5704 5568 5 1441 304 282 52 39 chr9 112290756 112290911 -11785261 - L1M5 LINE L1 -743 5403 5247 5 1441 232 302 81 45 chr9 112290950 112291061 -11785111 - B1_Mus2 SINE Alu -16 131 17 5 1441 594 266 124 0 chr9 112290963 112291140 -11785032 - ID_B1 SINE B4 -25 199 1 5 1441 405 295 0 0 chr9 112291982 112292087 -11784085 + B4A SINE B4 180 284 -8 5 1441 423 286 0 48 chr9 112292149 112292274 -11783898 - RSINE1 SINE B4 -39 126 8 5 1441 456 51 0 0 chr9 112292420 112292479 -11783693 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1441 27 73 0 0 chr9 112293640 112293695 -11782477 + AT_rich Low_complexity Low_complexity 1 55 0 5 1441 927 248 208 18 chr9 112293856 112294197 -11781975 - MTD LTR MaLR 0 419 14 5 1441 275 332 77 45 chr9 112294756 112294977 -11781195 - MLT1G1 LTR MaLR -271 308 81 5 1441 374 195 0 11 chr9 112295646 112295734 -11780438 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1441 870 69 23 0 chr9 112295780 112295911 -11780261 + (GGGAGA)n Simple_repeat Simple_repeat 3 136 0 5 1441 397 320 91 49 chr9 112295930 112296193 -11779979 - B4 SINE B4 -17 275 2 5 1441 317 366 26 52 chr9 112296526 112296719 -11779453 + L3 LINE CR1 4200 4387 -102 5 1441 984 258 30 92 chr9 112297389 112297790 -11778382 - MTEb LTR MaLR -3 376 1 5 1441 654 120 0 0 chr9 112299297 112299422 -11776750 + (TC)n Simple_repeat Simple_repeat 2 126 0 5 1441 195 42 0 0 chr9 112299422 112299446 -11776726 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1441 287 311 31 61 chr9 112299503 112299612 -11776560 - PB1D7 SINE Alu -15 102 1 5 1441 601 258 143 0 chr9 112299988 112300170 -11776002 - B3 SINE B2 -7 209 2 5 1441 21 0 0 0 chr9 112300189 112300210 -11775962 + AT_rich Low_complexity Low_complexity 1 21 0 5 1441 444 292 98 10 chr9 112300405 112300599 -11775573 + L1MCa LINE L1 2141 2351 -4157 5 1441 243 0 0 0 chr9 112300645 112300672 -11775500 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1441 330 219 0 12 chr9 112300742 112300825 -11775347 - MLT2B4 LTR ERVL -334 80 3 5 1441 639 314 15 45 chr9 112300827 112301027 -11775145 + B3A SINE B2 2 195 -3 5 1441 268 315 112 76 chr9 112301049 112301612 -11774560 + L1MCa LINE L1 2524 3106 -3215 5 1441 310 292 143 54 chr9 112301668 112301871 -11774301 + L1MCa LINE L1 3146 3366 -2955 5 1441 693 240 40 0 chr9 112301878 112302028 -11774144 + B3A SINE B2 8 163 -35 5 1441 1419 6 23 0 chr9 112302142 112302317 -11773855 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 5 1441 239 252 113 14 chr9 112302324 112302465 -11773707 + L1MCa LINE L1 3767 3921 -2400 5 1441 217 273 32 54 chr9 112302564 112302657 -11773515 + PB1D10 SINE Alu 22 112 -5 5 1441 211 349 57 23 chr9 112303065 112303241 -11772931 - L2 LINE L2 -1563 1856 1675 5 1441 488 236 30 30 chr9 112303263 112303394 -11772778 + RMER15 LTR ERVL 1 131 -444 5 1441 757 304 140 4 chr9 112303417 112303681 -11772491 + RMER15 LTR ERVL 276 575 0 5 1441 297 380 62 40 chr9 112303824 112304049 -11772123 - L2 LINE L2 -2026 1393 1164 5 1441 6898 58 3 1 chr9 112304088 112305118 -11771054 + L1_Mus1 LINE L1 5661 6567 0 5 1441 343 344 102 40 chr9 112305281 112305635 -11770537 - L2 LINE L2 -2462 957 582 5 1441 216 0 0 0 chr9 112306315 112306339 -11769833 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1441 446 227 145 18 chr9 112306761 112306927 -11769245 + Lx6 LINE L1 7244 7430 -30 5 1441 884 291 39 104 chr9 112307686 112308116 -11768056 - MTE2a LTR MaLR -15 404 1 5 1441 267 31 0 0 chr9 112308587 112308619 -11767553 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1441 6201 108 23 117 chr9 112308879 112309687 -11766485 - L1_Mur1 LINE L1 -3472 2414 1582 5 1441 5604 72 4 1 chr9 112309687 112310414 -11765758 - L1_Mus2 LINE L1 0 6566 5838 5 1441 6201 111 65 101 chr9 112310414 112311456 -11764716 - L1_Mur1 LINE L1 -4305 1581 676 5 1441 570 191 0 0 chr9 112311488 112311598 -11764574 - L1_Mur1 LINE L1 -6667 317 208 5 1441 5937 88 1 10 chr9 112311603 112312504 -11763668 + L1_Mur1 LINE L1 2302 3194 -2692 5 1441 4926 90 24 0 chr9 112312544 112313103 -11763069 + Lx3_Mus LINE L1 6316 6874 -135 5 1441 189 0 0 0 chr9 112313103 112313124 -11763048 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 5 1441 4926 90 24 0 chr9 112313124 112313242 -11762930 + Lx3_Mus LINE L1 6875 7007 -2 5 1441 3269 128 9 7 chr9 112313247 112313797 -11762375 - L1_Mm LINE L1 -593 5290 4740 5 1441 2073 94 10 3 chr9 112313798 112314097 -11762075 + L1_Mus3 LINE L1 6337 6637 -1 5 1441 23 33 0 0 chr9 112314115 112314145 -11762027 + AT_rich Low_complexity Low_complexity 1 30 0 5 1441 302 388 0 0 chr9 112314494 112314592 -11761580 + MTEa LTR MaLR 1 98 -281 5 1441 450 266 82 10 chr9 112314574 112314737 -11761435 - B3 SINE B2 -6 187 2 5 1441 973 298 17 28 chr9 112314760 112315047 -11761125 + MTEa LTR MaLR 96 379 0 5 1441 2516 261 70 54 chr9 112315390 112315861 -11760311 + Lx9 LINE L1 6404 6862 -782 5 1441 2023 132 6 38 chr9 112315861 112316201 -11759971 - ORR1A4 LTR MaLR 0 329 1 5 1441 2516 261 70 54 chr9 112316201 112316635 -11759537 + Lx9 LINE L1 6863 7323 -321 5 1441 1546 264 42 82 chr9 112316645 112317501 -11758671 + RMER12 LTR ERVK 2 804 -1044 5 1441 423 0 0 0 chr9 112317525 112317572 -11758600 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1441 393 195 205 33 chr9 112317592 112317714 -11758458 + RMER12 LTR ERVK 994 1136 -186 5 1441 1195 132 26 0 chr9 112317745 112317907 -11758265 + B2_Mm2 SINE B2 1 162 -33 5 1441 180 0 0 0 chr9 112317907 112317927 -11758245 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1441 1195 132 26 0 chr9 112317927 112317953 -11758219 + B2_Mm2 SINE B2 163 193 -2 5 1441 285 267 0 45 chr9 112317979 112318089 -11758083 + Lx3C LINE L1 649 753 -6231 5 1441 23264 155 38 5 chr9 112318203 112324221 -11751951 + Lx3C LINE L1 744 6974 -2 5 1441 336 164 0 0 chr9 112324248 112324315 -11751857 + GA-rich Low_complexity Low_complexity 4 70 0 5 1441 387 194 39 228 chr9 112324315 112324495 -11751677 + RMER12 LTR ERVK 1176 1321 -1 5 1441 361 300 22 35 chr9 112324539 112324767 -11751405 + Lx9 LINE L1 7404 7628 -16 5 1441 24 77 0 0 chr9 112324767 112324819 -11751353 + AT_rich Low_complexity Low_complexity 1 52 0 5 1441 258 282 88 40 chr9 112325301 112325468 -11750704 + MTEa LTR MaLR 211 377 -2 5 1441 239 336 76 8 chr9 112326068 112326200 -11749972 - MIRb SINE MIR -63 205 65 5 1441 361 202 14 54 chr9 112327370 112327454 -11748718 - RSINE1 SINE B4 -206 86 7 5 1441 695 282 17 81 chr9 112327461 112327696 -11748476 - ID_B1 SINE B4 -2 222 3 5 1442 198 0 0 0 chr9 112329487 112329509 -11746663 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1442 432 0 0 0 chr9 112329519 112329567 -11746605 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1442 1110 284 50 63 chr9 112331257 112331637 -11744535 + MTEa LTR MaLR 5 379 0 5 1442 531 301 159 10 chr9 112332537 112332732 -11743440 + B4A SINE B4 24 247 -45 5 1442 573 199 0 0 chr9 112332767 112332898 -11743274 + (CA)n Simple_repeat Simple_repeat 1 131 0 5 1442 552 268 0 23 chr9 112333351 112333481 -11742691 + RSINE1 SINE B4 3 129 -36 5 1442 495 232 26 18 chr9 112333589 112333703 -11742469 + PB1D7 SINE Alu 4 118 -2 5 1442 240 325 77 26 chr9 112334340 112334371 -11741801 + ID SINE ID 41 77 -147 5 1442 368 275 101 2 chr9 112334371 112334481 -11741691 + PB1D9 SINE Alu 2 119 -1 5 1442 543 205 262 6 chr9 112335332 112335504 -11740668 + B3 SINE B2 1 216 0 5 1442 696 45 0 0 chr9 112335586 112335674 -11740498 + (CAAAAA)n Simple_repeat Simple_repeat 2 89 0 5 1442 430 284 186 17 chr9 112335798 112336034 -11740138 + B4A SINE B4 1 276 -16 5 1442 226 280 0 0 chr9 112336044 112336094 -11740078 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1442 182 24 0 106 chr9 112336377 112336424 -11739748 + (TTA)n Simple_repeat Simple_repeat 1 42 0 5 1442 283 265 14 14 chr9 112336679 112336748 -11739424 - RSINE1 SINE B4 -94 71 3 5 1442 235 323 30 15 chr9 112337581 112337647 -11738525 - RSINE1 SINE B4 -83 82 16 5 1442 512 207 8 0 chr9 112337652 112337773 -11738399 + CT-rich Low_complexity Low_complexity 2 123 0 5 1442 226 385 19 0 chr9 112337774 112337878 -11738294 - RLTR20B3 LTR ERVK 0 577 472 5 1442 1508 237 45 45 chr9 112337907 112338353 -11737819 - RLTR20B3 LTR ERVK -95 482 37 5 1442 218 333 12 0 chr9 112338363 112338447 -11737725 + CT-rich Low_complexity Low_complexity 6 90 0 5 1442 221 367 123 15 chr9 112339503 112339518 -11736654 - ID_B1 SINE B4 -79 145 2 5 1442 274 294 78 52 chr9 112339518 112339633 -11736539 - B3A SINE B2 -79 119 2 5 1442 856 200 72 79 chr9 112339713 112339990 -11736182 + RMER10A LTR ERVL 24 298 -144 5 1442 646 263 45 26 chr9 112340309 112340465 -11735707 + RSINE1 SINE B4 7 165 0 5 1442 495 87 0 0 chr9 112340544 112340613 -11735559 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 1442 1319 67 0 6 chr9 112340824 112341004 -11735168 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 5 1442 237 65 0 0 chr9 112341004 112341035 -11735137 + (CCCCCT)n Simple_repeat Simple_repeat 1 31 0 5 1442 205 333 0 25 chr9 112341042 112341162 -11735010 + CT-rich Low_complexity Low_complexity 2 118 0 5 1442 209 175 17 34 chr9 112341772 112341831 -11734341 + GA-rich Low_complexity Low_complexity 3 60 0 5 1442 454 253 28 50 chr9 112342121 112342300 -11733872 - RCHARR1 DNA MER1_type -1 973 799 5 1442 243 88 0 0 chr9 112342432 112342466 -11733706 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1442 470 292 7 0 chr9 112342554 112342691 -11733481 - Lx7 LINE L1 -411 7285 7148 5 1442 2430 274 37 60 chr9 112342691 112343528 -11732644 - RCHARR1 DNA MER1_type -120 854 37 5 1442 336 188 0 0 chr9 112343567 112343636 -11732536 + GA-rich Low_complexity Low_complexity 2 70 0 5 1442 230 288 68 0 chr9 112343640 112343713 -11732459 - ID4 SINE ID -5 78 1 6 1442 371 239 34 11 chr9 112343715 112343804 -11732368 - PB1D10 SINE Alu -6 111 21 6 1442 843 253 57 0 chr9 112344388 112344582 -11731590 - B3 SINE B2 -11 205 1 6 1442 1205 211 33 28 chr9 112346262 112346756 -11729416 - RLTR20C LTR ERVK 0 534 5 6 1442 747 250 6 19 chr9 112347215 112347374 -11728798 - RSINE1 SINE B4 -6 159 3 6 1442 348 261 0 56 chr9 112348348 112348510 -11727662 + (CA)n Simple_repeat Simple_repeat 1 153 0 6 1442 218 276 86 0 chr9 112349786 112349844 -11726328 - ID4 SINE ID -18 65 3 6 1442 573 258 83 18 chr9 112349863 112350080 -11726092 - L1MA7 LINE L1 -6 6285 6055 6 1442 1143 234 58 41 chr9 112350183 112350517 -11725655 + ORR1E LTR MaLR 1 379 0 6 1442 539 303 59 9 chr9 112350823 112350932 -11725240 + MER96B DNA hAT 3 117 -300 6 1442 1480 117 5 0 chr9 112350932 112351146 -11725026 + Lx2 LINE L1 6781 6995 -2 6 1442 539 303 59 9 chr9 112351146 112351256 -11724916 + MER96B DNA hAT 118 232 -185 6 1442 2223 98 13 6 chr9 112352384 112352701 -11723471 + ORR1A2 LTR MaLR 1 319 -8 6 1442 2468 95 11 19 chr9 112352705 112353079 -11723093 + ORR1A2-int LTR MaLR 1 371 -1592 6 1442 1079 281 100 12 chr9 112353260 112353599 -11722573 + MTD LTR MaLR 51 419 0 6 1442 315 186 0 0 chr9 112354323 112354420 -11721752 + GA-rich Low_complexity Low_complexity 2 98 0 6 1442 243 0 0 0 chr9 112355096 112355123 -11721049 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1442 371 191 15 0 chr9 112355186 112355254 -11720918 + B3A SINE B2 1 69 -129 6 1442 303 28 0 0 chr9 112356113 112356149 -11720023 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1442 240 35 0 0 chr9 112356166 112356195 -11719977 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 1442 243 320 11 49 chr9 112356490 112356540 -11719632 + (CATA)n Simple_repeat Simple_repeat 4 54 0 6 1442 423 0 0 0 chr9 112356540 112356587 -11719585 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1442 243 320 11 49 chr9 112356587 112356720 -11719452 + (CATA)n Simple_repeat Simple_repeat 3 128 0 6 1442 988 301 97 12 chr9 112358225 112358646 -11717526 + RMER15-int LTR ERVL 4153 4609 -390 6 1442 535 277 23 8 chr9 112358674 112358805 -11717367 - B4A SINE B4 -96 196 64 6 1442 384 103 0 0 chr9 112358851 112358909 -11717263 + (TATG)n Simple_repeat Simple_repeat 2 59 0 6 1442 351 0 0 0 chr9 112359837 112359876 -11716296 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1442 22 0 0 0 chr9 112359929 112359951 -11716221 + AT_rich Low_complexity Low_complexity 1 22 0 6 1442 667 270 30 18 chr9 112360048 112360214 -11715958 - ID_B1 SINE B4 0 224 57 6 1442 270 310 68 31 chr9 112361244 112361407 -11714765 - L2 LINE L2 -452 2967 2799 6 1442 5731 91 20 7 chr9 112361429 112362240 -11713932 - L1_Mur1 LINE L1 -424 5462 4642 6 1442 6992 113 33 16 chr9 112362240 112363290 -11712882 + Lx3_Mus LINE L1 5930 6998 -11 6 1442 180 0 0 0 chr9 112363290 112363310 -11712862 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 6 1442 1269 223 128 121 chr9 112363445 112363859 -11712313 + MTC LTR MaLR 1 417 -4 6 1442 1178 229 114 37 chr9 112364111 112364461 -11711711 + MTEb LTR MaLR 1 377 -2 6 1442 785 297 23 9 chr9 112365398 112365612 -11710560 + ID_B1 SINE B4 1 217 -7 6 1442 354 299 27 27 chr9 112365632 112365742 -11710430 + PB1D10 SINE Alu 1 110 -7 6 1442 1890 134 9 77 chr9 112366424 112366763 -11709409 - ORR1A4 LTR MaLR -8 321 6 6 1442 387 0 0 0 chr9 112366763 112366806 -11709366 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1442 315 0 0 0 chr9 112366852 112366887 -11709285 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1442 235 283 61 17 chr9 112367107 112367211 -11708961 + Charlie1a DNA MER1_type 957 1065 -390 6 1442 449 342 103 8 chr9 112367211 112367453 -11708719 + MLT1A0 LTR MaLR 1 265 -100 6 1442 253 305 22 58 chr9 112367547 112367686 -11708486 + Charlie1a DNA MER1_type 1101 1234 -221 6 1442 188 211 13 0 chr9 112367797 112367873 -11708299 + CT-rich Low_complexity Low_complexity 2 78 0 6 1442 405 0 0 0 chr9 112368591 112368636 -11707536 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1442 485 217 23 0 chr9 112368636 112368811 -11707361 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1442 243 173 0 0 chr9 112368894 112368946 -11707226 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1442 515 204 23 4 chr9 112368967 112369231 -11706941 + (CA)n Simple_repeat Simple_repeat 1 269 0 6 1442 198 91 0 0 chr9 112369592 112369625 -11706547 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 6 1442 656 238 177 115 chr9 112370289 112370645 -11705527 + MTE2a LTR MaLR 1 378 -1 6 1442 211 366 56 0 chr9 112370645 112370715 -11705457 + B3A SINE B2 76 149 -49 6 1442 546 67 0 0 chr9 112370723 112370798 -11705374 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1442 27 0 0 0 chr9 112370837 112370864 -11705308 + AT_rich Low_complexity Low_complexity 1 27 0 6 1442 953 72 20 7 chr9 112371630 112371783 -11704389 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 6 1442 450 314 9 0 chr9 112371802 112371907 -11704265 - RSINE1 SINE B4 -35 130 25 6 1442 351 24 0 0 chr9 112371907 112371948 -11704224 - L1Md_F2 LINE L1 -540 6042 6002 6 1442 3467 57 0 0 chr9 112371948 112372355 -11703817 + L1Md_F2 LINE L1 6164 6570 -12 6 1442 225 356 127 0 chr9 112372689 112372807 -11703365 - MER45A DNA Tip100 -37 141 9 6 1442 841 262 45 0 chr9 112373191 112373393 -11702779 - B3 SINE B2 -5 211 1 6 1442 21 57 0 0 chr9 112373930 112373965 -11702207 + AT_rich Low_complexity Low_complexity 1 35 0 6 1442 582 311 55 12 chr9 112373992 112374155 -11702017 - B3A SINE B2 -27 171 2 6 1442 480 35 0 0 chr9 112374948 112375006 -11701166 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1442 561 230 8 53 chr9 112375018 112375091 -11701081 - RSINE1 SINE B4 -37 128 56 6 1442 5178 122 36 1 chr9 112375091 112375803 -11700369 - RMER19A LTR ERVK 0 737 1 6 1442 561 230 8 53 chr9 112375803 112375862 -11700310 - RSINE1 SINE B4 -110 55 2 6 1442 468 51 0 0 chr9 112376570 112376629 -11699543 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1442 251 268 0 18 chr9 112376689 112376746 -11699426 - B3A SINE B2 -95 103 48 6 1442 1151 298 171 22 chr9 112377295 112378124 -11698048 - L1MC2 LINE L1 -24 6320 5368 6 1442 1179 75 0 0 chr9 112378128 112378385 -11697787 + (TTCTG)n Simple_repeat Simple_repeat 1 257 0 6 1442 734 306 47 17 chr9 112378387 112378623 -11697549 + ORR1E LTR MaLR 13 255 -104 6 1442 751 241 141 54 chr9 112378623 112378899 -11697273 + MTD LTR MaLR 12 311 -108 6 1442 894 138 0 0 chr9 112379473 112379633 -11696539 + (TG)n Simple_repeat Simple_repeat 1 160 0 6 1442 578 276 31 0 chr9 112379638 112379765 -11696407 - RSINE1 SINE B4 -21 144 14 6 1442 31 58 0 0 chr9 112381254 112381306 -11694866 + AT_rich Low_complexity Low_complexity 1 52 0 6 1442 255 125 0 0 chr9 112381421 112381461 -11694711 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1442 25 0 0 0 chr9 112381507 112381532 -11694640 + AT_rich Low_complexity Low_complexity 1 25 0 6 1442 234 0 0 0 chr9 112382135 112382161 -11694011 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1442 216 0 0 0 chr9 112382161 112382184 -11693988 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1442 352 349 101 29 chr9 112382573 112382921 -11693251 + Lx8 LINE L1 7072 7444 -29 6 1442 32 0 0 0 chr9 112382952 112382984 -11693188 + AT_rich Low_complexity Low_complexity 1 32 0 6 1442 180 0 0 0 chr9 112382990 112383010 -11693162 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1442 477 173 270 9 chr9 112383161 112383272 -11692900 - RLTR28 LTR ERVL -151 373 234 6 1442 509 270 77 85 chr9 112383908 112384310 -11691862 - RMER15 LTR ERVL -76 499 11 6 1442 858 294 49 42 chr9 112384760 112385066 -11691106 - RMER15 LTR ERVL -1 574 267 6 1442 299 232 59 35 chr9 112385089 112385174 -11690998 - RMER15 LTR ERVL -457 118 32 6 1442 235 304 37 81 chr9 112385296 112385432 -11690740 - MIRc SINE MIR -108 160 31 6 1442 1614 107 9 0 chr9 112385773 112386006 -11690166 - ORR1A2 LTR MaLR 0 327 93 6 1442 33495 18 2 6 chr9 112386006 112392560 -11683612 - L1Md_A LINE L1 0 6582 55 6 1442 663 158 28 70 chr9 112392560 112392703 -11683469 - ORR1A2 LTR MaLR -190 137 1 6 1442 608 302 11 43 chr9 112393833 112394020 -11682152 + B4 SINE B4 46 226 -66 6 1442 561 210 0 0 chr9 112394050 112394150 -11682022 + B1_Mur2 SINE Alu 40 139 -10 6 1442 261 0 0 0 chr9 112395438 112395467 -11680705 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1442 1161 82 0 0 chr9 112395559 112395706 -11680466 + B1_Mus1 SINE Alu 1 147 -1 6 1442 378 255 0 140 chr9 112397055 112397140 -11679032 + HAL1-2a_MD LINE L1 2350 2420 -604 6 1442 270 0 0 0 chr9 112397140 112397170 -11679002 + (CAG)n Simple_repeat Simple_repeat 1 30 0 6 1442 378 255 0 140 chr9 112397170 112397262 -11678910 + HAL1-2a_MD LINE L1 2421 2502 -522 6 1442 652 317 62 13 chr9 112397448 112397672 -11678500 + B4 SINE B4 9 243 -49 6 1442 2433 188 61 18 chr9 112397698 112398192 -11677980 - RLTR17 LTR ERVK -86 606 92 6 1442 437 321 46 18 chr9 112400360 112400642 -11675530 - B4A SINE B4 -2 290 1 6 1442 840 20 0 0 chr9 112400787 112400885 -11675287 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 1442 430 242 49 12 chr9 112401242 112401405 -11674767 - L1M5 LINE L1 -350 5823 5655 6 1442 615 282 53 22 chr9 112401402 112401725 -11674447 - L1M5 LINE L1 -2303 3843 3511 6 1442 547 304 7 7 chr9 112402772 112402908 -11673264 - B1F2 SINE Alu -1 148 13 6 1442 243 242 45 15 chr9 112402859 112402926 -11673246 + YREP_Mm Unknown Unknown 256 324 -1488 6 1442 21 57 0 0 chr9 112403111 112403146 -11673026 + AT_rich Low_complexity Low_complexity 1 35 0 6 1442 290 212 136 0 chr9 112403680 112403746 -11672426 + B4 SINE B4 3 77 -215 6 1442 3422 66 0 0 chr9 112403746 112404202 -11671970 + L1Md_F2 LINE L1 5131 5586 -297 6 1442 8020 44 3 10 chr9 112404202 112405205 -11670967 + L1Md_F2 LINE L1 5587 6582 0 6 1442 390 21 0 0 chr9 112405391 112405438 -11670734 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1442 23 54 0 0 chr9 112405545 112405582 -11670590 + AT_rich Low_complexity Low_complexity 1 37 0 6 1442 225 386 99 0 chr9 112405641 112405742 -11670430 - PB1D10 SINE Alu -6 111 1 6 1442 395 339 55 20 chr9 112405744 112405943 -11670229 + L1M2 LINE L1 2614 2819 -3324 7 1442 477 298 80 32 chr9 112405969 112406156 -11670016 + MTE2b LTR MaLR 184 379 0 7 1442 911 309 117 72 chr9 112406157 112406979 -11669193 + L1M2 LINE L1 3068 3926 -2217 7 1442 2777 153 78 12 chr9 112407005 112407093 -11669079 - RLTR20C LTR ERVK 0 534 446 7 1442 504 0 0 0 chr9 112407093 112407149 -11669023 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1442 2777 153 78 12 chr9 112407149 112407561 -11668611 - RLTR20C LTR ERVK -89 445 2 7 1442 616 305 64 18 chr9 112407611 112408002 -11668170 + L1M2 LINE L1 4023 4431 -1709 7 1442 406 311 94 37 chr9 112408005 112408367 -11667805 + L1M2 LINE L1 4993 5374 -772 7 1442 769 246 21 215 chr9 112408371 112408604 -11667568 + B3 SINE B2 6 216 0 7 1442 269 309 104 30 chr9 112410289 112410317 -11665855 - ID_B1 SINE B4 -1 223 128 7 1442 395 305 0 10 chr9 112410317 112410413 -11665759 - B1F1 SINE Alu -46 103 9 7 1442 269 309 104 30 chr9 112410413 112410424 -11665748 - ID_B1 SINE B4 -1 127 83 7 1442 1251 292 46 40 chr9 112411299 112411670 -11664502 + MTEa LTR MaLR 7 379 0 7 1442 25 0 0 0 chr9 112412187 112412212 -11663960 + AT_rich Low_complexity Low_complexity 1 25 0 7 1442 621 302 19 19 chr9 112412443 112412649 -11663523 - ID_B1 SINE B4 -16 208 3 7 1442 581 284 96 21 chr9 112413881 112414068 -11662104 - B4 SINE B4 -11 281 81 7 1442 746 338 84 19 chr9 112414797 112415120 -11661052 - ORR1E LTR MaLR -8 351 8 7 1442 1918 200 25 5 chr9 112415416 112416128 -11660044 + L1_Mur1 LINE L1 756 1480 -2432 7 1442 382 190 0 12 chr9 112416128 112416208 -11659964 + L1_Mur1 LINE L1 1776 1854 -2058 7 1442 6303 154 22 33 chr9 112416229 112418213 -11657959 + Lx3C LINE L1 4806 6770 -206 7 1442 576 0 0 0 chr9 112418213 112418277 -11657895 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 7 1442 6303 181 40 22 chr9 112418277 112418462 -11657710 + Lx3C LINE L1 6771 6974 -2 7 1442 772 251 23 14 chr9 112419471 112419685 -11656487 - B3 SINE B2 0 216 1 7 1442 795 285 75 8 chr9 112419936 112420177 -11655995 + B4A SINE B4 36 292 0 7 1442 249 33 0 0 chr9 112420440 112420470 -11655702 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1442 597 94 0 0 chr9 112420660 112420745 -11655427 + (TGAA)n Simple_repeat Simple_repeat 4 88 0 7 1442 317 220 130 11 chr9 112421804 112421896 -11654276 + B1F2 SINE Alu 42 144 -5 7 1442 507 82 0 0 chr9 112422420 112422493 -11653679 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 7 1442 496 297 128 27 chr9 112422946 112423133 -11653039 - B3A SINE B2 -7 209 4 7 1442 698 178 222 0 chr9 112423188 112423373 -11652799 - URR1A DNA MER1_type 0 226 1 7 1442 343 325 31 13 chr9 112423535 112423694 -11652478 - HAL1 LINE L1 -904 1603 1442 7 1442 27 29 0 0 chr9 112424695 112424729 -11651443 + AT_rich Low_complexity Low_complexity 1 34 0 7 1442 611 265 40 25 chr9 112424756 112424939 -11651233 - MTEa LTR MaLR -2 377 192 7 1442 350 236 155 30 chr9 112424939 112425121 -11651051 - MTD LTR MaLR 0 419 184 7 1442 2175 265 196 34 chr9 112425528 112426707 -11649465 + RMER1A Other Other 1 999 -31 7 1442 588 314 36 29 chr9 112426707 112426972 -11649200 - MTD LTR MaLR -106 315 21 7 1442 434 269 130 37 chr9 112427003 112427165 -11649007 - MTEa LTR MaLR -201 178 2 7 1442 639 0 0 0 chr9 112429454 112429525 -11646647 + (GA)n Simple_repeat Simple_repeat 1 71 0 7 1442 1379 81 0 0 chr9 112429565 112429751 -11646421 - L1_Mus2 LINE L1 -1 6565 6380 7 1442 316 257 19 19 chr9 112430074 112430181 -11645991 + (TG)n Simple_repeat Simple_repeat 2 108 0 7 1442 280 399 33 33 chr9 112430275 112430428 -11645744 - B4A SINE B4 -138 154 2 7 1442 228 289 0 0 chr9 112430623 112430675 -11645497 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1442 468 292 22 33 chr9 112430884 112431068 -11645104 + B3A SINE B2 1 182 -16 7 1442 879 243 38 52 chr9 112431336 112431679 -11644493 + Lx7 LINE L1 7359 7696 0 7 1442 21 0 0 0 chr9 112431707 112431728 -11644444 + AT_rich Low_complexity Low_complexity 1 21 0 7 1442 681 132 48 6 chr9 112431982 112432150 -11644022 + CT-rich Low_complexity Low_complexity 5 179 0 7 1442 1077 103 11 6 chr9 112432156 112432332 -11643840 + (TTCTC)n Simple_repeat Simple_repeat 3 179 0 7 1442 6557 98 5 10 chr9 112432334 112433303 -11642869 - L1_Mus4 LINE L1 -8 6628 5665 7 1442 394 76 30 15 chr9 112435280 112435347 -11640825 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 7 1442 704 302 96 19 chr9 112435469 112435729 -11640443 - B4 SINE B4 0 292 13 7 1442 522 0 0 0 chr9 112436848 112436906 -11639266 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1442 357 24 0 0 chr9 112436906 112436947 -11639225 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1442 242 140 35 17 chr9 112437244 112437302 -11638870 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 7 1442 1107 83 7 0 chr9 112437302 112437447 -11638725 - B1_Mus2 SINE Alu 0 147 2 7 1442 238 267 50 0 chr9 112437534 112437594 -11638578 + PB1D10 SINE Alu 54 116 -1 7 1442 264 312 43 0 chr9 112437761 112437854 -11638318 - Lx7 LINE L1 -783 6913 6817 7 1442 793 190 21 0 chr9 112437919 112438061 -11638111 + B1_Mur2 SINE Alu 5 149 0 7 1442 267 196 20 0 chr9 112438400 112438451 -11637721 + ID4_ SINE ID 22 73 -10 7 1442 363 44 0 0 chr9 112438454 112438499 -11637673 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1442 358 284 64 51 chr9 112438942 112439098 -11637074 - B4A SINE B4 -133 159 2 7 1442 266 148 0 18 chr9 112439348 112439403 -11636769 + (CAT)n Simple_repeat Simple_repeat 1 54 0 7 1442 2188 159 28 62 chr9 112439928 112440114 -11636058 + MTC LTR MaLR 1 190 -231 7 1442 360 0 0 0 chr9 112440114 112440154 -11636018 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 1442 2188 159 28 62 chr9 112440154 112440403 -11635769 + MTC LTR MaLR 191 421 0 7 1442 242 321 13 13 chr9 112440474 112440553 -11635619 + MER3 DNA MER1_type 15 93 -116 7 1442 610 229 19 25 chr9 112440558 112440715 -11635457 + Lx5 LINE L1 6212 6367 -683 7 1442 534 16 0 0 chr9 112440715 112440778 -11635394 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 1442 450 321 24 36 chr9 112441252 112441417 -11634755 + RSINE1 SINE B4 3 165 0 7 1442 371 21 21 0 chr9 112441472 112441520 -11634652 + (TTTG)n Simple_repeat Simple_repeat 3 51 0 7 1442 251 253 130 11 chr9 112441521 112441613 -11634559 - PB1D10 SINE Alu -11 106 4 7 1442 21 0 0 0 chr9 112442290 112442311 -11633861 + AT_rich Low_complexity Low_complexity 1 21 0 7 1442 224 235 47 0 chr9 112443783 112443868 -11632304 + (TA)n Simple_repeat Simple_repeat 1 89 0 7 1442 339 25 0 0 chr9 112443875 112443915 -11632257 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 7 1442 624 321 12 0 chr9 112443932 112444094 -11632078 - B3A SINE B2 -30 168 5 7 1442 345 301 58 10 chr9 112444126 112444230 -11631942 - RSINE1 SINE B4 -46 119 11 7 1442 768 272 20 0 chr9 112444722 112444917 -11631255 + B3 SINE B2 3 201 -15 7 1442 607 256 0 14 chr9 112445022 112445161 -11631011 - B1F SINE Alu -2 147 11 7 1442 1500 229 19 43 chr9 112446096 112446471 -11629701 - MTE2a LTR MaLR -13 366 1 7 1442 507 33 0 0 chr9 112446522 112446583 -11629589 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1442 468 0 0 0 chr9 112446988 112447040 -11629132 + (TTATA)n Simple_repeat Simple_repeat 3 54 0 7 1442 337 274 0 104 chr9 112447526 112447591 -11628581 - B3 SINE B2 -121 95 39 7 1442 6244 35 8 0 chr9 112447591 112448345 -11627827 - L1Md_F3 LINE L1 0 6584 5825 7 1442 337 274 0 104 chr9 112448345 112448385 -11627787 - B3 SINE B2 -178 38 1 7 1442 335 315 59 0 chr9 112448756 112448994 -11627178 + L1MA6 LINE L1 5760 6011 -289 7 1442 431 88 0 0 chr9 112449150 112449218 -11626954 - L1Md_F2 LINE L1 -6 6576 6509 7 1442 11442 96 10 9 chr9 112449218 112451561 -11624611 - L1Md_A LINE L1 -3110 2773 446 7 1442 657 146 297 19 chr9 112451675 112451884 -11624288 - Lx3C LINE L1 -2 6974 6708 7 1442 3043 103 38 6 chr9 112451883 112452354 -11623818 - Lx3C LINE L1 -431 6545 6060 7 1442 234 358 0 0 chr9 112452392 112452459 -11623713 + ID4 SINE ID 2 68 -15 7 1442 25 31 0 0 chr9 112452536 112452568 -11623604 + AT_rich Low_complexity Low_complexity 1 32 0 7 1442 21 36 0 0 chr9 112452658 112452686 -11623486 + AT_rich Low_complexity Low_complexity 1 28 0 7 1442 481 252 109 8 chr9 112452698 112452826 -11623346 - RSINE1 SINE B4 -21 144 4 7 1442 222 258 0 29 chr9 112453260 112453328 -11622844 + (TATG)n Simple_repeat Simple_repeat 3 68 0 7 1442 208 255 0 0 chr9 112453363 112453410 -11622762 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1442 270 0 0 0 chr9 112455067 112455097 -11621075 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1442 393 307 123 36 chr9 112455177 112455331 -11620841 - L1M4 LINE L1 -3503 2643 2481 7 1442 507 17 0 0 chr9 112455331 112455391 -11620781 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1442 393 307 123 36 chr9 112455391 112455513 -11620659 - L1M4 LINE L1 -3666 2480 2344 7 1442 244 310 57 11 chr9 112455593 112455681 -11620491 - BC1_Mm scRNA scRNA -49 103 12 7 1442 290 132 0 19 chr9 112455701 112455755 -11620417 + CT-rich Low_complexity Low_complexity 1 53 0 7 1442 3876 248 14 18 chr9 112455765 112456671 -11619501 - Lx5 LINE L1 -5 7045 6143 7 1442 4869 163 42 8 chr9 112456661 112457639 -11618533 - L1_Mur2 LINE L1 -826 5051 4041 7 1442 4656 166 38 10 chr9 112457667 112458627 -11617545 - L1_Mur2 LINE L1 -2831 3046 2061 7 1443 184 237 94 78 chr9 112460861 112460925 -11615247 + MIRc SINE MIR 57 121 -147 7 1443 446 183 41 34 chr9 112461033 112461180 -11614992 + RMER17B LTR ERVK 312 459 -499 7 1443 345 333 86 7 chr9 112461514 112461632 -11614540 + RSINE1 SINE B4 3 124 -41 7 1443 303 28 0 0 chr9 112461632 112461668 -11614504 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1443 345 333 86 7 chr9 112461668 112461700 -11614472 + RSINE1 SINE B4 125 164 -1 7 1443 334 320 12 0 chr9 112461706 112461878 -11614294 + (CA)n Simple_repeat Simple_repeat 1 174 0 7 1443 233 347 20 0 chr9 112461910 112462008 -11614164 - LTR16E1 LTR ERVL 0 538 439 7 1443 25 75 0 0 chr9 112463343 112463396 -11612776 + AT_rich Low_complexity Low_complexity 1 53 0 7 1443 560 313 8 0 chr9 112463422 112463553 -11612619 - RSINE1 SINE B4 -28 137 6 7 1443 536 278 81 35 chr9 112463557 112463591 -11612581 - B3 SINE B2 -9 207 169 7 1443 324 0 0 0 chr9 112463591 112463627 -11612545 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1443 598 261 45 19 chr9 112463627 112463790 -11612382 - B3A SINE B2 -48 168 1 7 1443 189 328 62 55 chr9 112464161 112464306 -11611866 + L2 LINE L2 2107 2252 -1167 8 1443 531 74 0 0 chr9 112464457 112464538 -11611634 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1443 243 0 0 0 chr9 112464538 112464564 -11611608 + (GA)n Simple_repeat Simple_repeat 2 28 0 8 1443 687 302 0 28 chr9 112464803 112464980 -11611192 + B3A SINE B2 6 177 -21 8 1443 216 0 0 0 chr9 112464982 112465006 -11611166 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 1443 6378 95 35 9 chr9 112465062 112465976 -11610196 + Lx3_Mus LINE L1 6068 7005 -4 8 1443 593 0 28 0 chr9 112466518 112466590 -11609582 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 8 1443 866 277 69 51 chr9 112466592 112466801 -11609371 + B4A SINE B4 6 213 -79 8 1443 248 0 31 0 chr9 112466801 112466833 -11609339 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 8 1443 866 277 69 51 chr9 112466833 112466897 -11609275 + B4A SINE B4 214 283 -9 8 1443 441 0 0 0 chr9 112467030 112467079 -11609093 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1443 318 248 79 40 chr9 112467176 112467302 -11608870 + L2 LINE L2 2684 2814 -605 8 1443 338 242 0 10 chr9 112467347 112467443 -11608729 + L1M4 LINE L1 5573 5667 -513 8 1443 21 0 0 0 chr9 112467492 112467513 -11608659 + AT_rich Low_complexity Low_complexity 1 21 0 8 1443 749 317 74 58 chr9 112467513 112467892 -11608280 - MTD LTR MaLR -28 391 7 8 1443 359 266 19 25 chr9 112467892 112468032 -11608140 + L1M4 LINE L1 5692 5833 -407 8 1443 30 69 0 0 chr9 112468700 112468758 -11607414 + AT_rich Low_complexity Low_complexity 1 58 0 8 1443 397 331 38 15 chr9 112469784 112469916 -11606256 + B1F SINE Alu 9 143 -6 8 1443 245 311 14 0 chr9 112469923 112469997 -11606175 + ID4_ SINE ID 5 79 -4 8 1443 567 337 82 0 chr9 112470092 112470276 -11605896 + B3 SINE B2 4 202 -14 8 1443 211 189 0 36 chr9 112470278 112470333 -11605839 + GA-rich Low_complexity Low_complexity 3 55 0 8 1443 259 282 0 14 chr9 112471321 112471393 -11604779 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 1443 263 283 0 0 chr9 112471544 112471604 -11604568 + B1F SINE Alu 1 60 -89 8 1443 432 0 0 0 chr9 112471902 112471950 -11604222 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1443 2424 117 8 5 chr9 112472296 112472690 -11603482 - L1_Mus1 LINE L1 -416 5467 5073 8 1443 7201 66 15 1 chr9 112472679 112473768 -11602404 + L1_Mus1 LINE L1 5462 6565 -2 8 1443 612 0 0 0 chr9 112473958 112474026 -11602146 + (GA)n Simple_repeat Simple_repeat 2 69 0 8 1443 386 252 72 0 chr9 112474384 112474495 -11601677 - PB1D7 SINE Alu -1 119 1 8 1443 1070 231 196 17 chr9 112475343 112475696 -11600476 - MTD LTR MaLR -1 418 3 8 1443 342 0 0 0 chr9 112476170 112476208 -11599964 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1443 25 51 0 0 chr9 112476676 112476715 -11599457 + AT_rich Low_complexity Low_complexity 1 39 0 8 1443 335 288 108 64 chr9 112477274 112477478 -11598694 - B3 SINE B2 0 216 4 8 1443 193 229 20 20 chr9 112477612 112477661 -11598511 - MIR3 SINE MIR -35 173 125 8 1443 525 277 21 28 chr9 112478343 112478488 -11597684 + RSINE1 SINE B4 3 146 -19 8 1443 445 339 53 0 chr9 112478885 112479056 -11597116 + B3A SINE B2 1 180 -18 8 1443 355 231 83 46 chr9 112479360 112479469 -11596703 + B3A SINE B2 1 113 -85 8 1443 1194 286 29 34 chr9 112480245 112480596 -11595576 + MTEa LTR MaLR 22 370 -9 8 1443 608 255 30 35 chr9 112480975 112481174 -11594998 - B3A SINE B2 0 198 1 8 1443 590 291 90 134 chr9 112481650 112481940 -11594232 + B4A SINE B4 1 277 -15 8 1443 548 291 88 33 chr9 112482346 112482527 -11593645 + RMER30 DNA MER1_type 11 201 -1 8 1443 378 234 140 0 chr9 112482542 112482649 -11593523 + RSINE1 SINE B4 2 123 -42 8 1443 624 91 0 0 chr9 112482661 112482749 -11593423 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 1443 541 132 57 0 chr9 112482840 112482946 -11593226 + L1_Mm LINE L1 5218 5329 -554 8 1443 404 320 16 8 chr9 112482992 112483121 -11593051 + RSINE1 SINE B4 32 161 -4 8 1443 851 274 116 36 chr9 112483600 112483936 -11592236 + ORR1E LTR MaLR 1 378 -1 8 1443 22 0 0 0 chr9 112484095 112484117 -11592055 + AT_rich Low_complexity Low_complexity 1 22 0 8 1443 579 117 0 0 chr9 112484173 112484276 -11591896 + (CA)n Simple_repeat Simple_repeat 1 103 0 8 1443 612 330 64 25 chr9 112484351 112484631 -11591541 + B4A SINE B4 1 291 -1 8 1443 284 179 0 20 chr9 112484926 112485007 -11591165 - Lx2B LINE L1 -873 6185 6107 8 1443 2370 164 2 27 chr9 112485007 112485453 -11590719 + Lx4B LINE L1 6204 6638 -420 8 1443 972 49 0 0 chr9 112485533 112485655 -11590517 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 8 1443 402 208 78 0 chr9 112485875 112485952 -11590220 - B3 SINE B2 -4 212 130 8 1443 313 295 44 44 chr9 112485952 112486087 -11590085 + MTEa LTR MaLR 239 373 -6 8 1443 296 289 0 104 chr9 112486178 112486313 -11589859 - B3A SINE B2 -1 197 77 8 1443 510 356 102 35 chr9 112486482 112487050 -11589122 + L1MC3 LINE L1 5782 6387 -1398 8 1443 979 323 88 51 chr9 112487528 112488510 -11587662 + L1MC3 LINE L1 6445 7462 -323 8 1443 698 230 21 7 chr9 112488626 112488766 -11587406 + B1_Mur1 SINE Alu 6 147 -2 8 1443 244 130 0 0 chr9 112490030 112490076 -11586096 - Lx8 LINE L1 -8 7465 7420 8 1443 254 162 73 0 chr9 112490148 112490216 -11585956 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 8 1443 192 250 0 0 chr9 112490219 112490283 -11585889 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1443 1050 304 31 0 chr9 112490422 112490744 -11585428 + Lx8 LINE L1 6845 7176 -297 8 1443 4671 56 19 0 chr9 112490751 112491338 -11584834 + L1Md_F2 LINE L1 5972 6569 -13 8 1443 414 333 89 54 chr9 112491355 112491691 -11584481 - L1MC4 LINE L1 -5 8037 7690 8 1443 252 0 0 0 chr9 112492130 112492158 -11584014 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1443 582 128 0 0 chr9 112492158 112492275 -11583897 + (GA)n Simple_repeat Simple_repeat 2 118 0 8 1443 456 313 123 0 chr9 112492452 112492615 -11583557 + ORR1D2 LTR MaLR 188 370 0 8 1443 192 263 82 31 chr9 112492918 112493016 -11583156 + L3b LINE CR1 372 474 -8 8 1443 503 330 43 9 chr9 112493854 112494065 -11582107 + ID_B1 SINE B4 4 221 -3 8 1443 890 309 65 22 chr9 112495166 112495444 -11580728 + B4A SINE B4 3 292 0 8 1443 935 218 348 80 chr9 112495993 112496323 -11579849 + MTD LTR MaLR 2 419 0 8 1443 468 0 0 0 chr9 112496423 112496475 -11579697 + (CTAAA)n Simple_repeat Simple_repeat 4 55 0 8 1443 600 277 12 55 chr9 112496606 112496770 -11579402 + B4 SINE B4 5 161 -131 8 1443 236 333 108 84 chr9 112496766 112496933 -11579239 + B4 SINE B4 122 292 0 8 1443 930 286 55 22 chr9 112497461 112497825 -11578347 + MTEa LTR MaLR 1 376 -3 8 1443 543 31 0 0 chr9 112497931 112497996 -11578176 + (TG)n Simple_repeat Simple_repeat 1 65 0 8 1443 624 27 0 0 chr9 112498649 112498723 -11577449 + (TC)n Simple_repeat Simple_repeat 2 75 0 8 1443 182 135 238 75 chr9 112499480 112499560 -11576612 + MIR SINE MIR 33 125 -83 8 1443 241 146 0 24 chr9 112499958 112500000 -11576172 + MTD LTR MaLR 1 41 -378 8 1443 758 328 47 55 chr9 112500028 112500393 -11575779 + MT2A LTR ERVL 75 436 -97 1 1443 405 256 109 6 chr9 112500377 112500542 -11575630 + MT2A LTR ERVL 350 531 -2 1 1443 620 302 90 0 chr9 112501079 112501268 -11574904 + MTE2b LTR MaLR 174 379 0 2 1443 2776 67 0 9 chr9 112501490 112501838 -11574334 - IAPLTR4 LTR ERVK 0 345 1 3 1443 347 310 33 146 chr9 112502137 112502468 -11573704 + MTE2a LTR MaLR 6 293 -86 4 1443 345 24 0 0 chr9 112502521 112502563 -11573609 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1443 753 286 11 0 chr9 112502565 112502743 -11573429 - B3A SINE B2 -18 180 1 6 1443 432 0 0 0 chr9 112502796 112502844 -11573328 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1443 381 22 0 0 chr9 112503441 112503487 -11572685 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1443 291 136 0 0 chr9 112503487 112503546 -11572626 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1443 261 0 0 0 chr9 112503976 112504005 -11572167 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1443 447 106 0 0 chr9 112504005 112504070 -11572102 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1443 858 251 29 25 chr9 112504747 112504951 -11571221 - B3 SINE B2 -4 212 8 1 1443 273 262 46 35 chr9 112505102 112505189 -11570983 + MER89 LTR ERV1 24 111 -448 1 1443 804 273 8 2 chr9 112505499 112505697 -11570475 + B3A SINE B2 5 204 -12 1 1443 659 135 21 14 chr9 112506746 112506889 -11569283 + GA-rich Low_complexity Low_complexity 2 145 0 1 1443 669 295 6 0 chr9 112506896 112507062 -11569110 - MLT2C2 LTR ERVL -297 167 1 1 1443 281 132 41 0 chr9 112507257 112507321 -11568851 + MIRb SINE MIR 104 178 -90 1 1443 307 358 21 21 chr9 112507972 112508112 -11568060 - LTR81A LTR ERV1? -1197 153 14 1 1443 300 83 0 0 chr9 112508150 112508198 -11567974 + (TTGG)n Simple_repeat Simple_repeat 4 51 0 1 1443 643 262 0 0 chr9 112508219 112508368 -11567804 - B1_Mur4 SINE Alu 0 150 2 2 1443 667 221 211 67 chr9 112509129 112509605 -11566567 + RMER4B LTR ERVK 1 561 -24 2 1443 530 131 10 0 chr9 112510428 112510527 -11565645 + (TG)n Simple_repeat Simple_repeat 2 101 0 2 1443 697 359 22 0 chr9 112510650 112510873 -11565299 - B4 SINE B4 -57 235 8 2 1443 766 277 32 60 chr9 112511464 112511714 -11564458 - RMER15 LTR ERVL -54 521 279 2 1443 417 366 101 37 chr9 112513319 112513914 -11562258 - L1ME3 LINE L1 -90 6072 5440 2 1443 488 280 7 27 chr9 112515646 112515793 -11560379 - RSINE1 SINE B4 -19 146 3 2 1443 706 286 46 5 chr9 112516102 112516299 -11559873 + B3 SINE B2 2 206 -10 2 1443 1565 29 4 8 chr9 112516625 112516870 -11559302 + (GGGAGA)n Simple_repeat Simple_repeat 1 243 0 2 1443 618 14 0 0 chr9 112517021 112517092 -11559080 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1443 409 194 224 44 chr9 112517283 112517466 -11558706 + B3 SINE B2 1 216 0 3 1443 24 53 0 0 chr9 112518636 112518674 -11557498 + AT_rich Low_complexity Low_complexity 1 38 0 3 1443 1125 195 10 0 chr9 112518801 112519001 -11557171 + B3 SINE B2 3 204 -12 3 1443 429 291 26 0 chr9 112519429 112519618 -11556554 - L1MCa LINE L1 -3192 3129 2936 3 1443 436 308 87 40 chr9 112519658 112519807 -11556365 - RSINE1 SINE B4 -4 161 6 3 1443 480 309 17 6 chr9 112519825 112520004 -11556168 + Lx8 LINE L1 7161 7341 -132 3 1443 236 268 61 0 chr9 112520121 112520203 -11555969 - L1MCa LINE L1 -3401 2920 2834 3 1443 318 238 111 67 chr9 112520851 112520986 -11555186 - B1F SINE Alu 0 149 9 3 1443 321 331 92 32 chr9 112521003 112521253 -11554919 - L1MCa LINE L1 -4867 1641 1377 3 1443 29 0 0 0 chr9 112521336 112521365 -11554807 + AT_rich Low_complexity Low_complexity 1 29 0 3 1443 306 0 0 0 chr9 112521471 112521505 -11554667 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 1443 38795 14 1 6 chr9 112521510 112527701 -11548471 - L1Md_A LINE L1 -2 6580 423 3 1443 841 243 64 0 chr9 112528481 112528683 -11547489 + B3 SINE B2 2 216 0 4 1443 24 53 0 0 chr9 112528777 112528815 -11547357 + AT_rich Low_complexity Low_complexity 1 38 0 4 1443 688 369 85 51 chr9 112528925 112529822 -11546350 + L1MEa LINE L1 1042 1975 -5127 4 1443 859 150 42 70 chr9 112529904 112530119 -11546053 + B3 SINE B2 5 213 -3 4 1443 227 214 56 28 chr9 112530130 112530202 -11545970 + L1MEa LINE L1 3613 3686 -3648 4 1443 744 294 122 4 chr9 112530251 112530504 -11545668 + B4A SINE B4 10 292 0 4 1443 342 268 103 66 chr9 112531486 112531622 -11544550 - RMER15 LTR ERVL 0 575 435 4 1443 278 111 38 89 chr9 112531626 112531705 -11544467 - Lx9 LINE L1 -36 7608 7534 4 1443 227 298 25 42 chr9 112531719 112531838 -11544334 + RMER12 LTR ERVK 750 866 -456 4 1443 799 164 62 0 chr9 112531869 112532046 -11544126 - Lx9 LINE L1 -130 7514 7327 4 1443 1391 254 78 35 chr9 112532051 112532475 -11543697 - RMER15 LTR ERVL -107 468 27 4 1443 21 0 0 0 chr9 112532771 112532792 -11543380 + AT_rich Low_complexity Low_complexity 1 21 0 4 1443 414 0 0 0 chr9 112532943 112532989 -11543183 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1443 445 278 0 0 chr9 112532994 112533084 -11543088 - B3A SINE B2 -107 91 2 5 1443 778 102 0 16 chr9 112533307 112533436 -11542736 + (TC)n Simple_repeat Simple_repeat 2 128 0 5 1443 6462 125 38 5 chr9 112533682 112535116 -11541056 - Lx LINE L1 -1 6653 5177 5 1443 1007 221 59 0 chr9 112535402 112535606 -11540566 - B3 SINE B2 0 216 1 5 1443 314 276 93 33 chr9 112535631 112535781 -11540391 - L1M4b LINE L1 -7165 169 11 5 1443 4849 49 2 2 chr9 112536095 112536693 -11539479 - L1Md_F2 LINE L1 -5 6577 5980 5 1443 25 0 0 0 chr9 112536694 112536719 -11539453 + AT_rich Low_complexity Low_complexity 1 25 0 5 1443 1499 237 103 56 chr9 112536734 112537198 -11538974 - RMER19C LTR ERVK 0 611 126 5 1443 336 48 0 0 chr9 112537233 112537275 -11538897 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1443 473 289 149 20 chr9 112537358 112537761 -11538411 - L1MA8 LINE L1 -188 6103 5649 6 1443 2331 59 23 0 chr9 112537946 112538251 -11537921 - L1Md_F3 LINE L1 -14 6570 6259 6 1443 601 276 70 28 chr9 112538304 112538730 -11537442 - L1MA8 LINE L1 -686 5605 5156 6 1443 288 202 25 0 chr9 112538757 112538841 -11537331 - L1MA8 LINE L1 -1949 4197 4107 6 1443 666 299 32 63 chr9 112539021 112539242 -11536930 - B3A SINE B2 -2 214 1 6 1443 280 244 22 22 chr9 112539419 112539511 -11536661 + Lx9 LINE L1 7362 7453 -191 6 1443 295 41 41 0 chr9 112539513 112539562 -11536610 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1443 1210 43 0 0 chr9 112539565 112539706 -11536466 - B1_Mm SINE Alu -6 141 1 6 1443 419 306 70 63 chr9 112539824 112539967 -11536205 - RSINE1 SINE B4 0 165 22 6 1443 1402 311 102 49 chr9 112540329 112540708 -11535464 + L1MA5A LINE L1 3386 3783 -2360 6 1443 1814 186 96 8 chr9 112540708 112541093 -11535079 - MTC LTR MaLR -1 420 2 6 1443 1402 311 102 49 chr9 112541093 112542526 -11533646 + L1MA5A LINE L1 3784 5294 -849 6 1443 807 324 41 15 chr9 112542560 112543092 -11533080 + L1MA5A LINE L1 5355 5900 -397 6 1443 2180 249 15 119 chr9 112543632 112544113 -11532059 + RMER17B LTR ERVK 5 427 -531 6 1443 4159 72 4 16 chr9 112544113 112544667 -11531505 - L1_Mus2 LINE L1 0 6566 6020 7 1443 2180 246 28 158 chr9 112544667 112545288 -11530884 + RMER17B LTR ERVK 370 898 -10 6 1443 297 0 0 0 chr9 112546153 112546186 -11529986 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1443 586 343 14 41 chr9 112546212 112546507 -11529665 - B4A SINE B4 -4 288 2 7 1443 1116 91 0 0 chr9 112548494 112548637 -11527535 + B1_Mus1 SINE Alu 1 143 -5 7 1443 231 36 0 0 chr9 112548655 112548683 -11527489 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 7 1443 496 207 15 7 chr9 112548700 112548836 -11527336 + GA-rich Low_complexity Low_complexity 5 141 0 7 1443 4226 46 10 0 chr9 112549432 112549976 -11526196 - L1Md_F2 LINE L1 0 6582 6043 7 1443 384 383 79 43 chr9 112550255 112550558 -11525614 - LTR16A1 LTR ERVL -124 332 19 7 1443 336 200 0 0 chr9 112550697 112550777 -11525395 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1443 859 199 27 11 chr9 112550852 112551040 -11525132 + RMER5 LTR ERV1 323 513 -21 7 1443 456 67 0 0 chr9 112551950 112552010 -11524162 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1443 1227 264 128 6 chr9 112552440 112552791 -11523381 + MTD LTR MaLR 25 418 -1 8 1443 848 298 20 32 chr9 112552798 112553051 -11523121 + B4A SINE B4 43 292 0 8 1443 231 210 32 16 chr9 112553105 112553168 -11523004 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 8 1443 572 0 15 0 chr9 112553201 112553269 -11522903 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 8 1443 358 272 14 0 chr9 112553480 112553778 -11522394 + (TG)n Simple_repeat Simple_repeat 1 302 0 8 1443 308 247 0 6 chr9 112553794 112553965 -11522207 + (TG)n Simple_repeat Simple_repeat 2 171 0 8 1443 252 280 0 0 chr9 112553988 112554138 -11522034 + (TG)n Simple_repeat Simple_repeat 1 150 0 8 1443 230 308 4 116 chr9 112554154 112554194 -11521978 + RLTR21 LTR ERVK 1171 1228 -344 8 1443 246 299 21 103 chr9 112554194 112554291 -11521881 - RSINE1 SINE B4 0 165 77 8 1443 230 308 4 116 chr9 112554291 112554396 -11521776 + RLTR21 LTR ERVK 1229 1385 -187 8 1443 500 217 133 69 chr9 112554462 112554665 -11521507 + B3 SINE B2 1 216 0 8 1443 31 0 0 0 chr9 112554665 112554696 -11521476 + AT_rich Low_complexity Low_complexity 1 31 0 8 1443 355 280 45 28 chr9 112554737 112555012 -11521160 - L1M4 LINE L1 -722 5452 5179 8 1443 565 304 173 4 chr9 112555077 112555325 -11520847 - B4 SINE B4 -2 290 1 9 1443 229 234 0 0 chr9 112555339 112555386 -11520786 + (TTA)n Simple_repeat Simple_repeat 2 48 0 9 1443 423 83 0 0 chr9 112555402 112555462 -11520710 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1443 308 292 9 94 chr9 112555467 112555573 -11520599 - RSINE1 SINE B4 -9 156 60 9 1443 465 291 102 5 chr9 112555639 112555836 -11520336 - B3 SINE B2 0 216 1 9 1443 1380 341 42 21 chr9 112555925 112556690 -11519482 + Lx8 LINE L1 6206 7152 -492 9 1443 355 108 36 0 chr9 112557880 112557963 -11518209 + (CAAAAA)n Simple_repeat Simple_repeat 2 87 0 9 1443 559 326 72 10 chr9 112558684 112559168 -11517004 + L1M3 LINE L1 3360 3873 -2267 9 1443 679 250 7 0 chr9 112559245 112559381 -11516791 + B3A SINE B2 3 139 -59 9 1443 309 147 19 0 chr9 112559407 112559471 -11516701 + PB1D10 SINE Alu 59 148 -1 9 1443 191 176 53 26 chr9 112559497 112559573 -11516599 + GA-rich Low_complexity Low_complexity 4 81 0 1 1443 255 31 0 0 chr9 112559573 112559605 -11516567 + (TTG)n Simple_repeat Simple_repeat 3 34 0 1 1443 580 342 57 11 chr9 112559660 112560026 -11516146 + Ricksha DNA MuDR 2050 2432 -814 1 1443 323 318 183 59 chr9 112560633 112561054 -11515118 + L1M3 LINE L1 4071 4543 -1603 9 1443 327 312 76 21 chr9 112561092 112561328 -11514844 + L1M3 LINE L1 4581 4829 -1317 9 1443 22 0 0 0 chr9 112561355 112561377 -11514795 + AT_rich Low_complexity Low_complexity 1 22 0 1 1443 258 203 14 0 chr9 112561380 112561449 -11514723 - Lx4A LINE L1 -3 7055 6986 1 1443 963 237 5 32 chr9 112561450 112561668 -11514504 - MTD LTR MaLR -203 216 5 1 1443 330 26 0 0 chr9 112562185 112562224 -11513948 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1443 255 295 110 51 chr9 112562255 112562373 -11513799 - MIRb SINE MIR -29 239 115 1 1443 193 284 12 86 chr9 112562439 112562520 -11513652 - L2b LINE L2 0 3375 3301 1 1443 33964 42 0 3 chr9 112563719 112568989 -11507183 + L1Md_T LINE L1 242 5589 -297 1 1443 8519 31 0 0 chr9 112568989 112569985 -11506187 + L1Md_T LINE L1 5590 6585 0 1 1443 243 0 0 0 chr9 112570019 112570046 -11506126 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1443 552 286 102 64 chr9 112570070 112570257 -11505915 + B3A SINE B2 1 194 -1 1 1443 330 91 0 0 chr9 112571052 112571107 -11505065 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 1 1443 424 357 55 65 chr9 112571148 112571439 -11504733 - B4A SINE B4 -2 290 3 1 1443 284 261 0 0 chr9 112571535 112571600 -11504572 + ID4 SINE ID 1 65 -18 1 1443 233 204 20 0 chr9 112571710 112571759 -11504413 + C-rich Low_complexity Low_complexity 2 51 0 1 1443 477 50 0 0 chr9 112571759 112571819 -11504353 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1443 243 324 127 18 chr9 112572083 112572193 -11503979 - B4 SINE B4 -169 123 2 1 1443 536 253 142 7 chr9 112572664 112572819 -11503353 + B3A SINE B2 1 176 -22 1 1443 914 0 9 0 chr9 112572922 112573028 -11503144 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 1 1443 549 0 0 0 chr9 112574473 112574534 -11501638 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 1 1443 207 151 0 36 chr9 112574539 112574594 -11501578 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1443 527 161 18 0 chr9 112574599 112574711 -11501461 + (TCTCTG)n Simple_repeat Simple_repeat 5 118 0 1 1443 252 0 0 0 chr9 112575847 112575875 -11500297 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1443 327 289 0 32 chr9 112576968 112577061 -11499111 - BC1_Mm scRNA scRNA -52 100 11 1 1443 235 333 0 55 chr9 112577096 112577169 -11499003 - PB1D10 SINE Alu -28 89 21 1 1443 25 31 0 0 chr9 112577178 112577210 -11498962 + AT_rich Low_complexity Low_complexity 1 32 0 1 1443 376 376 65 18 chr9 112577350 112577567 -11498605 + B4A SINE B4 58 284 -8 1 1443 282 148 0 0 chr9 112577618 112577672 -11498500 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1443 770 241 85 0 chr9 112578235 112578434 -11497738 + B3 SINE B2 1 216 0 1 1443 509 92 11 0 chr9 112578651 112578738 -11497434 - Lx2 LINE L1 -4 6993 6906 1 1443 198 0 0 0 chr9 112579172 112579194 -11496978 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1443 299 365 10 0 chr9 112579713 112579817 -11496355 - MER90 LTR ERV1 0 575 471 1 1443 226 308 25 13 chr9 112580281 112580360 -11495812 + MLT2D LTR ERVL 377 456 -104 1 1443 399 21 0 0 chr9 112580379 112580427 -11495745 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1443 541 252 41 16 chr9 112582414 112582535 -11493637 + RSINE1 SINE B4 39 162 -3 1 1443 459 0 0 0 chr9 112582535 112582586 -11493586 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1443 308 281 0 10 chr9 112582738 112582835 -11493337 + L1MC4a LINE L1 7478 7573 -309 1 1443 1158 292 40 30 chr9 112582881 112583209 -11492963 + MTE2a LTR MaLR 49 379 0 1 1443 478 366 74 26 chr9 112583488 112583945 -11492227 + L1MC4a LINE L1 7116 7594 -288 1 1443 30 69 0 0 chr9 112584156 112584214 -11491958 + AT_rich Low_complexity Low_complexity 1 58 0 1 1443 275 256 150 87 chr9 112584902 112585172 -11491000 + B4A SINE B4 2 292 0 1 1443 834 189 173 0 chr9 112585422 112585613 -11490559 - URR1B DNA MER1_type -1 224 1 1 1443 990 206 19 32 chr9 112585946 112586162 -11490010 - B3 SINE B2 0 216 4 1 1443 1144 152 61 5 chr9 112586192 112586404 -11489768 - RMER1C Other Other -265 1077 854 1 1443 228 242 15 0 chr9 112586418 112586484 -11489688 + RMER1C Other Other 1157 1223 -119 1 1443 380 20 20 0 chr9 112586485 112586534 -11489638 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 1 1443 521 145 79 24 chr9 112586534 112586661 -11489511 + RMER1C Other Other 1198 1331 -11 1 1443 648 299 73 57 chr9 112587133 112587449 -11488723 - RLTR23 LTR ERV1 0 430 110 1 1443 543 160 6 191 chr9 112587533 112587695 -11488477 - RLTR23 LTR ERV1 -291 139 8 1 1443 594 128 0 0 chr9 112587765 112587859 -11488313 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 1 1443 4667 46 2 0 chr9 112588440 112589006 -11487166 - L1Md_T LINE L1 0 6582 6016 1 1443 709 331 37 79 chr9 112589048 112589376 -11486796 - MTEa LTR MaLR -13 366 53 1 1443 429 20 0 0 chr9 112590371 112590421 -11485751 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1443 488 16 16 0 chr9 112590421 112590481 -11485691 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1444 25 51 0 0 chr9 112590924 112590963 -11485209 + AT_rich Low_complexity Low_complexity 1 39 0 1 1444 687 88 0 0 chr9 112591028 112591141 -11485031 + (TC)n Simple_repeat Simple_repeat 2 114 0 1 1444 180 158 0 0 chr9 112591174 112591212 -11484960 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1444 197 133 0 62 chr9 112591212 112591260 -11484912 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1 1444 315 256 33 44 chr9 112592476 112592566 -11483606 + PB1D7 SINE Alu 32 120 0 1 1444 309 372 101 5 chr9 112592711 112592930 -11483242 - L1MD LINE L1 -516 5843 5604 1 1444 284 271 82 10 chr9 112592930 112593027 -11483145 + MLT2B3 LTR ERVL 1 104 -450 1 1444 262 330 77 38 chr9 112593185 112593368 -11482804 + MT2A LTR ERVL 231 420 -113 1 1444 195 146 0 0 chr9 112593418 112593459 -11482713 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1 1444 423 0 0 0 chr9 112593493 112593540 -11482632 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1444 396 0 0 0 chr9 112593716 112593760 -11482412 + (CCA)n Simple_repeat Simple_repeat 1 44 0 1 1444 266 253 12 12 chr9 112594106 112594186 -11481986 - L1M4 LINE L1 -585 5593 5514 1 1444 2816 33 63 0 chr9 112594277 112594640 -11481532 + MTA_Mm LTR MaLR 11 396 0 1 1444 340 291 162 35 chr9 112594843 112595071 -11481101 - L1M4 LINE L1 -1813 4333 4077 1 1444 269 246 101 75 chr9 112595286 112595703 -11480469 - L1M4 LINE L1 -2364 3782 3373 1 1444 1905 177 84 3 chr9 112595712 112596069 -11480103 - ORR1B1 LTR MaLR -8 386 1 1 1444 414 198 128 28 chr9 112596069 112596178 -11479994 - ORR1B1-int LTR MaLR 0 1509 1390 1 1444 3067 41 3 0 chr9 112596178 112596568 -11479604 + L1Md_F2 LINE L1 5196 5586 -297 1 1444 7822 49 26 0 chr9 112596568 112597539 -11478633 + L1Md_F2 LINE L1 5587 6582 0 1 1444 4613 218 72 86 chr9 112597557 112598943 -11477229 - ORR1B1-int LTR MaLR -142 1367 1 1 1444 2065 146 71 16 chr9 112598950 112599318 -11476854 - ORR1B1 LTR MaLR -6 388 1 1 1444 377 318 55 4 chr9 112599393 112599649 -11476523 - L1M4 LINE L1 -2888 3258 2990 1 1444 247 25 50 0 chr9 112599776 112599816 -11476356 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1444 579 247 115 11 chr9 112600780 112601058 -11475114 + L1MB8 LINE L1 4960 5266 -880 1 1444 551 376 97 46 chr9 112601207 112601928 -11474244 + L1MB8 LINE L1 5402 6159 -19 1 1444 460 270 90 52 chr9 112601984 112602195 -11473977 + Lx9 LINE L1 6868 7086 -558 1 1444 887 90 8 0 chr9 112602220 112602342 -11473830 + B1_Mus2 SINE Alu 24 146 -1 1 1444 265 24 23 23 chr9 112602344 112602387 -11473785 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1444 1384 257 44 12 chr9 112602399 112602809 -11473363 + Lx9 LINE L1 7073 7495 -149 1 1444 310 194 85 11 chr9 112603026 112603120 -11473052 - MTD LTR MaLR -313 106 6 1 1444 275 361 68 48 chr9 112603711 112603968 -11472204 + LTR16A1 LTR ERVL 30 334 -122 1 1444 532 284 72 29 chr9 112604404 112604611 -11471561 - RMER5 LTR ERV1 -277 257 42 1 1444 446 306 86 129 chr9 112605336 112605591 -11470581 + RMER15 LTR ERVL 318 561 -14 1 1444 492 323 41 51 chr9 112606027 112606223 -11469949 - B3A SINE B2 -3 195 2 1 1444 531 319 21 7 chr9 112607276 112607421 -11468751 + RSINE1 SINE B4 2 148 -17 1 1444 469 226 0 38 chr9 112608920 112609026 -11467146 + RSINE1 SINE B4 11 112 -53 1 1444 975 80 0 0 chr9 112609029 112609180 -11466992 + (TC)n Simple_repeat Simple_repeat 2 152 0 1 1444 205 51 51 0 chr9 112609248 112609287 -11466885 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1444 243 0 0 0 chr9 112610218 112610245 -11465927 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1444 584 38 0 12 chr9 112610246 112610326 -11465846 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1444 575 276 21 7 chr9 112610327 112610469 -11465703 - B3A SINE B2 -54 144 1 1 1444 449 303 68 8 chr9 112611705 112611838 -11464334 + B1F SINE Alu 4 144 -5 1 1444 257 267 25 62 chr9 112611852 112611932 -11464240 + ID4 SINE ID 1 77 -6 1 1444 429 66 0 0 chr9 112611936 112611997 -11464175 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1444 274 192 18 121 chr9 112612390 112612556 -11463616 - Lx9 LINE L1 -20 7624 7476 1 1444 361 264 18 12 chr9 112612556 112612721 -11463451 + (TA)n Simple_repeat Simple_repeat 2 167 0 1 1444 590 163 0 7 chr9 112612784 112612920 -11463252 + L1Md_A LINE L1 6446 6580 -2 1 1444 343 318 64 27 chr9 112613426 112613536 -11462636 + B1F1 SINE Alu 5 118 -31 1 1444 737 134 70 105 chr9 112613730 112613930 -11462242 + B2_Mm2 SINE B2 3 195 0 1 1444 296 271 60 67 chr9 112614123 112614273 -11461899 + MTE2a LTR MaLR 202 350 -29 1 1444 213 65 0 0 chr9 112615126 112615157 -11461015 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1444 22 70 0 0 chr9 112615459 112615502 -11460670 + AT_rich Low_complexity Low_complexity 1 43 0 1 1444 316 222 36 24 chr9 112616232 112616315 -11459857 + B4 SINE B4 2 85 -207 1 1444 618 262 131 21 chr9 112616329 112616520 -11459652 + B3 SINE B2 5 216 0 1 1444 279 173 152 9 chr9 112616537 112616642 -11459530 + Lx9 LINE L1 7512 7631 -13 1 1444 23 33 0 0 chr9 112616646 112616676 -11459496 + AT_rich Low_complexity Low_complexity 1 30 0 1 1444 262 330 36 9 chr9 112616681 112616791 -11459381 + PB1D9 SINE Alu 3 115 -5 2 1444 222 237 17 34 chr9 112616850 112616968 -11459204 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 2 1444 312 317 10 0 chr9 112616978 112617082 -11459090 + (CATA)n Simple_repeat Simple_repeat 2 106 0 2 1444 21 36 0 0 chr9 112617609 112617637 -11458535 + AT_rich Low_complexity Low_complexity 1 28 0 2 1444 670 295 59 74 chr9 112617948 112618146 -11458026 - MT2A LTR ERVL -8 525 319 2 1444 1158 196 4 9 chr9 112618146 112618372 -11457800 + URR1B DNA MER1_type 1 225 0 2 1444 670 295 59 74 chr9 112618372 112618444 -11457728 - MT2A LTR ERVL -215 318 259 2 1444 456 209 44 0 chr9 112618577 112618668 -11457504 + RMER15 LTR ERVL 481 575 0 2 1444 446 338 38 43 chr9 112618697 112618907 -11457265 - RMER12 LTR ERVK -13 1309 1101 2 1444 4715 129 32 18 chr9 112619115 112619907 -11456265 - RLTR22_Mur LTR ERVK -1045 803 1 2 1444 704 250 15 0 chr9 112619915 112620051 -11456121 - B3A SINE B2 -60 138 1 2 1444 229 214 81 23 chr9 112620064 112620150 -11456022 - L1M2 LINE L1 -1396 4747 4657 2 1444 751 306 73 23 chr9 112620148 112620723 -11455449 - L1_Mur3 LINE L1 -1573 4307 3704 2 1444 211 28 27 27 chr9 112620729 112620766 -11455406 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1444 259 320 33 26 chr9 112620820 112620971 -11455201 - L1_Mur3 LINE L1 -2271 3606 3455 2 1444 649 264 56 56 chr9 112620971 112621184 -11454988 + MTE2a LTR MaLR 111 323 -56 2 1444 28 51 0 17 chr9 112621188 112621199 -11454973 + AT_rich Low_complexity Low_complexity 1 11 0 2 1444 183 80 0 0 chr9 112621199 112621224 -11454948 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 2 1444 28 51 0 17 chr9 112621224 112621272 -11454900 + AT_rich Low_complexity Low_complexity 1 48 0 2 1444 962 313 18 34 chr9 112621476 112621803 -11454369 - MTEa LTR MaLR -34 345 24 2 1444 1704 230 87 13 chr9 112622567 112622959 -11453213 + MTC LTR MaLR 1 421 0 2 1444 1128 255 41 112 chr9 112623868 112624261 -11451911 + MTE2b LTR MaLR 3 367 -12 2 1444 618 43 32 0 chr9 112624657 112624751 -11451421 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 1444 532 310 9 61 chr9 112625144 112625357 -11450815 + ERVL-E-int LTR ERVL 4141 4342 -1325 2 1444 387 247 0 0 chr9 112625760 112625918 -11450254 + (TG)n Simple_repeat Simple_repeat 1 158 0 2 1444 209 57 0 28 chr9 112627058 112627094 -11449078 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1444 192 40 0 0 chr9 112627094 112627118 -11449054 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1444 180 314 0 38 chr9 112627254 112627307 -11448865 - L4 LINE RTE -1506 523 473 2 1444 243 61 0 0 chr9 112627531 112627564 -11448608 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1444 293 257 72 18 chr9 112627777 112627879 -11448293 + MIRb SINE MIR 101 199 -77 2 1444 593 301 40 10 chr9 112628254 112628647 -11447525 - L1MA4 LINE L1 -1647 5997 5615 2 1444 441 162 9 3 chr9 112628655 112628760 -11447412 - L1_Mur3 LINE L1 -708 5456 5352 2 1444 267 264 52 78 chr9 112629007 112629122 -11447050 + B4A SINE B4 181 292 0 2 1444 351 289 0 16 chr9 112629518 112629641 -11446531 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 1444 29 0 0 0 chr9 112631355 112631384 -11444788 + AT_rich Low_complexity Low_complexity 1 29 0 2 1444 262 299 0 40 chr9 112631480 112631581 -11444591 + GA-rich Low_complexity Low_complexity 3 99 0 2 1444 241 337 97 37 chr9 112631668 112631884 -11444288 + Lx8 LINE L1 7071 7299 -174 2 1444 325 262 18 36 chr9 112633077 112633188 -11442984 - PB1D10 SINE Alu -8 109 1 2 1444 443 0 53 0 chr9 112633855 112633912 -11442260 + (CAACT)n Simple_repeat Simple_repeat 4 63 0 2 1444 189 0 0 0 chr9 112633921 112633942 -11442230 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1444 399 306 0 105 chr9 112634161 112634285 -11441887 + B4A SINE B4 39 149 -143 2 1444 302 265 70 20 chr9 112634510 112634610 -11441562 + MLT2B2 LTR ERVL 76 180 -335 2 1444 232 284 78 22 chr9 112634741 112634831 -11441341 + MLT2B2 LTR ERVL 415 509 -53 2 1444 215 261 69 0 chr9 112634844 112634974 -11441198 + (TCTA)n Simple_repeat Simple_repeat 2 140 0 2 1444 26 50 0 0 chr9 112635000 112635040 -11441132 + AT_rich Low_complexity Low_complexity 1 40 0 2 1444 235 238 18 82 chr9 112635566 112635676 -11440496 - L1P5 LINE L1 -287 5869 5767 2 1444 29 28 0 0 chr9 112636748 112636784 -11439388 + AT_rich Low_complexity Low_complexity 1 36 0 2 1444 222 171 0 0 chr9 112638841 112638882 -11437290 + CT-rich Low_complexity Low_complexity 2 42 0 2 1444 473 211 0 8 chr9 112638880 112639009 -11437163 + (CAT)n Simple_repeat Simple_repeat 3 130 0 2 1444 2090 107 49 23 chr9 112639632 112639977 -11436195 + Lx LINE L1 6295 6648 -6 2 1444 625 266 26 5 chr9 112640341 112640506 -11435666 + B3A SINE B2 28 186 -30 2 1444 21 0 0 0 chr9 112641438 112641459 -11434713 + AT_rich Low_complexity Low_complexity 1 21 0 2 1444 617 273 93 27 chr9 112641793 112642103 -11434069 - MTD LTR MaLR 0 419 35 2 1444 523 314 0 0 chr9 112642148 112642285 -11433887 - ID_B1 SINE B4 -4 220 84 2 1444 417 318 117 0 chr9 112642671 112642885 -11433287 + MIR SINE MIR 11 249 -13 2 1444 839 318 95 4 chr9 112643039 112643301 -11432871 + B4 SINE B4 1 286 -6 2 1444 501 17 0 0 chr9 112643318 112643376 -11432796 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1444 598 291 0 135 chr9 112643508 112643715 -11432457 + B3A SINE B2 17 198 0 2 1444 1121 95 0 0 chr9 112644108 112644255 -11431917 + B1_Mus1 SINE Alu 2 148 0 2 1444 393 102 0 0 chr9 112644363 112644422 -11431750 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1444 630 263 40 23 chr9 112644424 112644599 -11431573 - B3A SINE B2 -16 182 5 2 1444 897 203 48 34 chr9 112644870 112644974 -11431198 + B3 SINE B2 1 105 -111 2 1444 3516 18 2 0 chr9 112644974 112645369 -11430803 - MTA_Mm LTR MaLR 0 396 1 2 1444 897 203 48 34 chr9 112645369 112645473 -11430699 + B3 SINE B2 106 212 -4 2 1444 574 326 33 73 chr9 112646989 112647290 -11428882 - B4A SINE B4 0 292 4 2 1444 1029 240 38 8 chr9 112647921 112648185 -11427987 - Lx6 LINE L1 -8 7452 7181 2 1444 441 0 0 0 chr9 112648748 112648797 -11427375 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1444 451 167 30 50 chr9 112648870 112648971 -11427201 - B4A SINE B4 -90 202 104 2 1444 1659 31 0 0 chr9 112648978 112649169 -11427003 + B2_Mm1t SINE B2 2 192 -1 2 1444 902 238 5 26 chr9 112649214 112649408 -11426764 + B3 SINE B2 27 216 0 2 1444 934 191 91 0 chr9 112649545 112649755 -11426417 + Lx3C LINE L1 6741 6969 -7 2 1444 261 250 0 15 chr9 112649992 112650057 -11426115 + MTEb LTR MaLR 311 374 -5 2 1444 527 349 14 9 chr9 112651086 112651300 -11424872 + ID_B1 SINE B4 1 215 -9 2 1444 281 26 0 26 chr9 112651711 112651750 -11424422 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1444 414 304 150 40 chr9 112651753 112652006 -11424166 - B4 SINE B4 -11 281 1 2 1444 851 51 76 0 chr9 112652873 112652991 -11423181 - B1_Mus1 SINE Alu 0 148 22 2 1444 720 304 61 18 chr9 112653312 112653540 -11422632 - ORR1E LTR MaLR -120 239 2 2 1444 735 249 11 66 chr9 112653740 112653921 -11422251 + B3A SINE B2 28 198 0 2 1444 321 47 0 0 chr9 112654753 112654796 -11421376 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 1444 270 231 0 30 chr9 112654981 112655048 -11421124 + (TATG)n Simple_repeat Simple_repeat 3 67 0 2 1444 858 295 10 0 chr9 112655148 112655341 -11420831 - B3 SINE B2 -13 203 9 2 1444 602 202 109 1 chr9 112657078 112657209 -11418963 + B3A SINE B2 1 149 -46 2 1444 327 104 0 0 chr9 112657209 112657257 -11418915 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1444 482 211 169 35 chr9 112657257 112657297 -11418875 + B2_Mm2 SINE B2 150 194 -1 2 1444 438 94 0 0 chr9 112658515 112658579 -11417593 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1444 554 244 29 29 chr9 112659714 112659853 -11416319 + B1_Mur1 SINE Alu 5 143 -6 2 1444 606 233 19 57 chr9 112660578 112660737 -11415435 + ID_B1 SINE B4 71 223 -1 2 1444 818 272 64 53 chr9 112661883 112662166 -11414006 + B4 SINE B4 2 287 -5 2 1444 365 58 19 0 chr9 112662190 112662242 -11413930 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1444 555 250 0 17 chr9 112663267 112663385 -11412787 - PB1D10 SINE Alu -1 116 1 2 1444 262 271 9 18 chr9 112663453 112663562 -11412610 + L1MC LINE L1 4557 4664 -1482 2 1444 24 53 0 0 chr9 112663619 112663657 -11412515 + AT_rich Low_complexity Low_complexity 1 38 0 2 1444 229 140 40 0 chr9 112663827 112663877 -11412295 + Lx9 LINE L1 7590 7641 -3 2 1444 23 0 0 0 chr9 112663880 112663903 -11412269 + AT_rich Low_complexity Low_complexity 1 23 0 2 1444 1010 169 11 0 chr9 112664154 112664337 -11411835 + Lx4A LINE L1 6874 7058 0 2 1444 374 260 13 0 chr9 112666141 112666218 -11409954 + B4 SINE B4 2 79 -213 2 1444 22 35 0 0 chr9 112666714 112666743 -11409429 + AT_rich Low_complexity Low_complexity 1 29 0 2 1444 416 262 42 113 chr9 112666743 112666911 -11409261 + B4 SINE B4 70 225 -67 2 1444 279 0 0 0 chr9 112667004 112667035 -11409137 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1444 1271 271 25 6 chr9 112667867 112668187 -11407985 - MTE2b LTR MaLR -36 343 18 2 1444 192 253 0 0 chr9 112669037 112669112 -11407060 + T-rich Low_complexity Low_complexity 1 75 0 2 1444 426 237 13 0 chr9 112669113 112669189 -11406983 - ID4 SINE ID -2 81 5 2 1444 507 322 70 33 chr9 112669204 112669517 -11406655 - MLT1E2 LTR MaLR -9 618 190 2 1444 234 246 98 73 chr9 112670065 112670188 -11405984 - MIRb SINE MIR -53 215 90 2 1444 31 0 0 0 chr9 112672564 112672595 -11403577 + AT_rich Low_complexity Low_complexity 1 31 0 2 1444 577 218 81 22 chr9 112673498 112673634 -11402538 + RMER13A LTR ERVK 1 144 -716 2 1444 638 289 50 87 chr9 112673620 112673919 -11402253 + RMER13A LTR ERVK 317 604 -256 2 1444 967 316 211 39 chr9 112675238 112675727 -11400445 - RMER15 LTR ERVL 0 575 3 3 1444 3052 128 15 11 chr9 112676342 112676801 -11399371 + Lx3B LINE L1 6512 6972 -1 3 1444 249 333 0 14 chr9 112677451 112677524 -11398648 - B1F SINE Alu -75 74 3 3 1444 2304 166 44 15 chr9 112677553 112677962 -11398210 + MTC LTR MaLR 1 421 0 3 1444 461 300 21 28 chr9 112678820 112678964 -11397208 - RSINE1 SINE B4 -19 146 4 3 1444 492 249 114 142 chr9 112679768 112680049 -11396123 - B4 SINE B4 -18 274 2 3 1444 200 291 250 18 chr9 112680200 112680312 -11395860 + MIR SINE MIR 9 146 -116 3 1444 405 312 34 54 chr9 112680438 112680587 -11395585 + B4A SINE B4 86 231 -61 3 1444 1687 209 102 27 chr9 112680593 112680967 -11395205 - MTC LTR MaLR -2 419 18 3 1444 255 345 0 0 chr9 112680972 112681030 -11395142 + B4A SINE B4 229 286 -6 3 1444 603 302 84 70 chr9 112681045 112681389 -11394783 - MTE2a LTR MaLR -16 403 54 3 1444 351 172 7 56 chr9 112681442 112681584 -11394588 + (CATA)n Simple_repeat Simple_repeat 1 135 0 3 1444 244 237 33 33 chr9 112682690 112682751 -11393421 + ID4 SINE ID 5 65 -18 3 1444 695 71 10 0 chr9 112682769 112682867 -11393305 + (GGA)n Simple_repeat Simple_repeat 1 99 0 3 1444 1132 261 50 48 chr9 112682935 112683313 -11392859 + MTEb LTR MaLR 1 379 0 3 1444 320 253 17 4 chr9 112683653 112683757 -11392415 + L1MCc LINE L1 1370 1475 -4947 3 1444 337 374 82 0 chr9 112683759 112683941 -11392231 + Cheshire DNA MER1_type 2 198 -2222 3 1444 441 302 24 8 chr9 112684003 112684130 -11392042 + RSINE1 SINE B4 2 130 -35 3 1444 288 111 0 0 chr9 112684132 112684177 -11391995 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1444 23 0 0 0 chr9 112684180 112684203 -11391969 + AT_rich Low_complexity Low_complexity 1 23 0 3 1444 471 291 18 9 chr9 112685693 112685804 -11390368 - B3A SINE B2 -17 181 70 3 1444 356 239 124 31 chr9 112687101 112687246 -11388926 - B1F SINE Alu -1 148 3 3 1444 374 253 0 12 chr9 112687931 112688095 -11388077 + (TATG)n Simple_repeat Simple_repeat 3 164 0 3 1444 307 225 216 0 chr9 112688178 112688289 -11387883 - L1MA5 LINE L1 -29 6271 6137 3 1444 320 291 81 15 chr9 112688273 112688473 -11387699 - L1M2 LINE L1 -746 5554 5336 3 1444 930 266 5 10 chr9 112688529 112688738 -11387434 + B3 SINE B2 1 208 -8 3 1444 1267 36 0 0 chr9 112688752 112688890 -11387282 + B1_Mm SINE Alu 2 139 -8 3 1444 180 0 0 0 chr9 112688890 112688910 -11387262 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1444 1917 273 137 44 chr9 112689248 112689992 -11386180 - RMER13A LTR ERVK -34 826 14 3 1444 397 306 31 75 chr9 112690018 112690080 -11386092 + L1M2 LINE L1 4782 4841 -1302 3 1444 1915 201 54 3 chr9 112690080 112690429 -11385743 - ORR1B2 LTR MaLR 0 367 1 3 1444 397 306 31 75 chr9 112690429 112690592 -11385580 + L1M2 LINE L1 4842 4997 -1146 3 1444 342 289 73 7 chr9 112690598 112690734 -11385438 - L1M2 LINE L1 -802 5489 5345 3 1444 355 314 58 7 chr9 112690779 112690917 -11385255 + B1F1 SINE Alu 3 147 -2 3 1444 324 0 0 0 chr9 112691012 112691048 -11385124 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1444 504 0 0 0 chr9 112691570 112691626 -11384546 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1444 310 370 17 8 chr9 112691626 112691746 -11384426 - B1F2 SINE Alu -22 127 7 3 1444 1445 122 13 25 chr9 112691780 112692015 -11384157 - Lx4B LINE L1 -950 6108 5877 3 1444 2101 196 119 40 chr9 112692017 112692495 -11383677 + RMER20A LTR ERVK 1 516 0 3 1444 542 147 10 19 chr9 112692495 112692599 -11383573 - Lx4B LINE L1 -1181 5877 5775 3 1444 6258 142 12 2 chr9 112692599 112693512 -11382660 + Lx4A LINE L1 6133 7054 -4 3 1444 234 62 0 0 chr9 112693513 112693545 -11382627 + (CATA)n Simple_repeat Simple_repeat 3 34 0 3 1444 361 307 0 11 chr9 112693652 112693741 -11382431 - RSINE1 SINE B4 -72 93 6 3 1444 377 294 54 48 chr9 112694193 112694361 -11381811 - MLT1B LTR MaLR -27 363 195 3 1444 25 31 0 0 chr9 112695870 112695902 -11380270 + AT_rich Low_complexity Low_complexity 1 32 0 3 1444 799 233 63 19 chr9 112696153 112696359 -11379813 - B3 SINE B2 -1 215 1 3 1444 242 254 29 15 chr9 112696360 112696428 -11379744 + CT-rich Low_complexity Low_complexity 3 71 0 3 1444 326 283 49 153 chr9 112696428 112696456 -11379716 - B1F SINE Alu 0 149 125 3 1444 3259 53 0 0 chr9 112696456 112696834 -11379338 + L1Md_F2 LINE L1 6194 6571 -11 3 1444 288 0 0 0 chr9 112696834 112696866 -11379306 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1444 326 283 49 153 chr9 112696866 112696999 -11379173 - B1F SINE Alu -25 124 5 3 1444 306 108 46 0 chr9 112697546 112697611 -11378561 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 3 1444 324 336 36 14 chr9 112697851 112697990 -11378182 - B4A SINE B4 -146 146 5 3 1444 324 127 0 0 chr9 112698133 112698188 -11377984 + (TGGA)n Simple_repeat Simple_repeat 4 58 0 3 1444 435 119 0 0 chr9 112698190 112698257 -11377915 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1444 24 32 0 0 chr9 112698347 112698378 -11377794 + AT_rich Low_complexity Low_complexity 1 31 0 3 1444 776 187 5 0 chr9 112698810 112699025 -11377147 + (CA)n Simple_repeat Simple_repeat 1 215 0 3 1444 996 258 5 5 chr9 112699237 112699440 -11376732 - B3 SINE B2 -13 203 1 3 1444 513 99 0 0 chr9 112700168 112700249 -11375923 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1444 278 276 117 84 chr9 112700301 112700455 -11375717 - MLT1A LTR MaLR -213 161 3 3 1444 283 206 79 0 chr9 112700856 112700919 -11375253 + RSINE1 SINE B4 57 124 -41 3 1444 468 0 0 0 chr9 112700919 112700971 -11375201 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1444 761 188 7 11 chr9 112701813 112702105 -11374067 + GA-rich Low_complexity Low_complexity 1 290 0 3 1444 244 319 0 21 chr9 112702124 112702217 -11373955 + GA-rich Low_complexity Low_complexity 1 91 0 3 1444 207 0 0 0 chr9 112702773 112702796 -11373376 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1444 24 32 0 0 chr9 112702845 112702876 -11373296 + AT_rich Low_complexity Low_complexity 1 31 0 3 1444 429 36 0 0 chr9 112703037 112703092 -11373080 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1444 1139 301 115 11 chr9 112703093 112703563 -11372609 - Lx8 LINE L1 -356 7117 6599 3 1444 484 304 103 37 chr9 112703787 112704060 -11372112 + ERVL-B4-int LTR ERVL 4944 5234 -480 3 1444 788 239 33 28 chr9 112704150 112704331 -11371841 + B3 SINE B2 35 216 0 3 1444 249 292 150 6 chr9 112704453 112704651 -11371521 + L1M3 LINE L1 3610 3843 -2303 3 1444 671 261 198 22 chr9 112705362 112705589 -11370583 + ORR1D2 LTR MaLR 8 274 -96 3 1444 305 250 25 12 chr9 112705744 112705825 -11370347 + GA-rich Low_complexity Low_complexity 3 84 0 3 1444 23 0 0 0 chr9 112706025 112706048 -11370124 + AT_rich Low_complexity Low_complexity 1 23 0 3 1444 24 0 0 0 chr9 112706509 112706533 -11369639 + AT_rich Low_complexity Low_complexity 1 24 0 3 1444 249 366 42 18 chr9 112707286 112707453 -11368719 - LTR16A LTR ERVL -26 425 255 3 1444 1004 279 17 50 chr9 112707990 112708292 -11367880 + B4A SINE B4 1 292 0 3 1444 405 123 0 0 chr9 112708292 112708357 -11367815 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1444 467 303 141 70 chr9 112708637 112708834 -11367338 + MLT1B LTR MaLR 1 215 -175 3 1444 225 0 0 0 chr9 112708834 112708859 -11367313 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1444 467 303 141 70 chr9 112708859 112708959 -11367213 + MLT1B LTR MaLR 216 319 -71 3 1444 514 154 226 0 chr9 112708964 112709095 -11367077 + B3 SINE B2 1 160 -38 3 1444 471 35 0 0 chr9 112709404 112709461 -11366711 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1444 483 33 0 0 chr9 112709461 112709521 -11366651 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1444 644 259 31 89 chr9 112709624 112709815 -11366357 + B3A SINE B2 2 181 -17 3 1444 608 87 0 11 chr9 112710052 112710145 -11366027 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 1444 218 32 0 31 chr9 112710958 112710990 -11365182 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3 1444 1015 134 0 11 chr9 112710990 112711171 -11365001 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 3 1444 608 268 194 20 chr9 112711337 112711585 -11364587 + B4A SINE B4 2 292 0 3 1444 202 290 14 28 chr9 112711588 112711659 -11364513 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1444 249 263 87 71 chr9 112711794 112711921 -11364251 + MLT1B LTR MaLR 246 374 -16 3 1444 401 269 0 61 chr9 112712736 112712776 -11363396 - MLT1A1 LTR MaLR -7 401 368 3 1444 986 191 56 287 chr9 112712776 112713274 -11362898 - ORR1C2 LTR MaLR -1 383 1 3 1444 401 269 0 61 chr9 112713274 112713348 -11362824 - MLT1A1 LTR MaLR -41 367 294 3 1444 299 325 36 65 chr9 112713348 112713516 -11362656 - MLT1A1 LTR MaLR -180 185 23 3 1444 243 160 57 40 chr9 112713900 112714024 -11362148 + GA-rich Low_complexity Low_complexity 2 127 0 3 1444 436 284 75 70 chr9 112714530 112714731 -11361441 + B3 SINE B2 14 215 -1 3 1444 180 0 0 0 chr9 112714922 112714942 -11361230 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1444 296 336 18 9 chr9 112715231 112715342 -11360830 + ORR1D2 LTR MaLR 5 116 -254 3 1444 245 346 36 27 chr9 112715444 112715554 -11360618 + ORR1D2 LTR MaLR 265 375 -4 3 1444 653 0 82 0 chr9 112715990 112716087 -11360085 + (TTATA)n Simple_repeat Simple_repeat 1 105 0 3 1444 342 0 0 0 chr9 112716264 112716302 -11359870 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1444 951 272 51 11 chr9 112716557 112716832 -11359340 - B4A SINE B4 -6 286 1 3 1444 8655 136 11 15 chr9 112717819 112719592 -11356580 - Lx2 LINE L1 0 6997 5226 3 1444 245 290 0 0 chr9 112720062 112720124 -11356048 - MIRm SINE MIR -124 152 91 3 1445 859 291 32 43 chr9 112722305 112722582 -11353590 + B4A SINE B4 17 290 -2 3 1445 327 25 0 0 chr9 112722607 112722647 -11353525 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1445 629 329 13 13 chr9 112723368 112723596 -11352576 + B4A SINE B4 1 228 -64 3 1445 396 0 0 0 chr9 112723658 112723702 -11352470 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1445 967 197 79 0 chr9 112725221 112725424 -11350748 - URR1B DNA MER1_type 0 225 7 4 1445 618 244 10 96 chr9 112725460 112725659 -11350513 + B3A SINE B2 1 182 -16 4 1445 471 256 0 0 chr9 112725659 112725835 -11350337 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 1445 514 225 6 6 chr9 112725868 112726047 -11350125 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1445 424 122 72 12 chr9 112726418 112726584 -11349588 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 4 1445 1215 250 86 6 chr9 112726958 112727284 -11348888 - MTE2a LTR MaLR 0 379 28 4 1445 283 286 14 0 chr9 112727589 112727659 -11348513 + CT-rich Low_complexity Low_complexity 1 71 0 4 1445 324 289 114 0 chr9 112729524 112729673 -11346499 - MER5A1 DNA MER1_type 0 166 1 4 1445 607 303 31 13 chr9 112729951 112730175 -11345997 + ORR1E LTR MaLR 1 228 -131 4 1445 277 271 82 20 chr9 112730170 112730268 -11345904 - B1_Mur4 SINE Alu -22 128 25 4 1445 1384 239 80 125 chr9 112730894 112731468 -11344704 + RMER15 LTR ERVL 28 575 0 4 1445 821 299 43 38 chr9 112731680 112732052 -11344120 + MTE2a LTR MaLR 1 374 -5 4 1445 990 17 0 0 chr9 112733218 112733334 -11342838 + (CA)n Simple_repeat Simple_repeat 2 117 0 4 1445 263 130 0 18 chr9 112733978 112734033 -11342139 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1445 623 350 53 0 chr9 112734066 112734332 -11341840 - B4A SINE B4 -12 280 1 4 1445 21 0 0 0 chr9 112734361 112734382 -11341790 + AT_rich Low_complexity Low_complexity 1 21 0 4 1445 309 301 24 8 chr9 112735345 112735469 -11340703 + RMER15 LTR ERVL 380 505 -70 4 1445 751 288 20 0 chr9 112736623 112736821 -11339351 - Lx8 LINE L1 -312 7161 6960 4 1445 615 256 6 48 chr9 112738200 112738368 -11337804 - RSINE1 SINE B4 0 165 5 4 1445 1548 101 114 0 chr9 112739195 112739432 -11336740 + Lx3_Mus LINE L1 6746 7009 0 4 1445 585 142 0 0 chr9 112739518 112739645 -11336527 + (GA)n Simple_repeat Simple_repeat 2 128 0 4 1445 368 270 34 34 chr9 112739945 112740064 -11336108 + RSINE1 SINE B4 12 130 -35 4 1445 675 25 0 0 chr9 112740068 112740149 -11336023 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 1445 248 283 74 16 chr9 112740378 112740500 -11335672 - L1MB1 LINE L1 -40 6149 6021 4 1445 809 302 53 30 chr9 112740559 112740825 -11335347 - B4A SINE B4 -10 282 11 4 1445 394 209 94 9 chr9 112740837 112740943 -11335229 - L1MB1 LINE L1 -203 5965 5851 4 1445 266 307 54 32 chr9 112741149 112741334 -11334838 - L1MB1 LINE L1 -507 5664 5476 4 1445 200 86 0 28 chr9 112741394 112741430 -11334742 + (CAT)n Simple_repeat Simple_repeat 3 37 0 4 1445 219 359 0 72 chr9 112741502 112741613 -11334559 - PB1 SINE Alu -4 123 21 4 1445 228 189 89 63 chr9 112741732 112741811 -11334361 - ID4_ SINE ID 0 83 3 4 1445 1726 213 21 16 chr9 112741890 112742276 -11333896 + MTD LTR MaLR 18 405 -14 4 1445 637 313 114 27 chr9 112742276 112742827 -11333345 + L1M3 LINE L1 4397 4995 -1145 4 1445 352 316 26 9 chr9 112743066 112743181 -11332991 + B1F SINE Alu 2 118 -31 4 1445 396 259 9 27 chr9 112745712 112745823 -11330349 + PB1D10 SINE Alu 1 109 -8 4 1445 509 298 126 35 chr9 112745917 112746020 -11330152 + MER74A LTR ERVL 21 146 -412 4 1445 414 0 0 0 chr9 112746020 112746066 -11330106 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1445 509 298 126 35 chr9 112746066 112746310 -11329862 + MER74A LTR ERVL 147 399 -159 4 1445 446 0 0 18 chr9 112746515 112746570 -11329602 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1445 3524 40 28 7 chr9 112746959 112747386 -11328786 - RLTR10C LTR ERVK 0 436 1 4 1445 204 233 0 0 chr9 112747589 112747632 -11328540 + (AATAG)n Simple_repeat Simple_repeat 5 47 0 4 1445 526 349 23 0 chr9 112747716 112747891 -11328281 - B3A SINE B2 -15 183 5 4 1445 1263 172 18 0 chr9 112748092 112748313 -11327859 - URR1B DNA MER1_type 0 225 1 4 1445 225 224 0 20 chr9 112748959 112748985 -11327187 + A-rich Low_complexity Low_complexity 2 27 0 4 1445 864 89 0 0 chr9 112748985 112749108 -11327064 + (GGAA)n Simple_repeat Simple_repeat 1 123 0 4 1445 225 224 0 20 chr9 112749108 112749131 -11327041 + A-rich Low_complexity Low_complexity 28 50 0 4 1445 435 202 0 0 chr9 112749954 112750078 -11326094 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 4 1445 356 328 16 8 chr9 112750285 112750408 -11325764 + B4A SINE B4 158 281 -11 4 1445 195 162 0 0 chr9 112750442 112750479 -11325693 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1445 446 144 0 22 chr9 112750481 112750573 -11325599 + G-rich Low_complexity Low_complexity 5 94 0 4 1445 235 278 28 125 chr9 112750710 112750782 -11325390 + MLT1A LTR MaLR 241 312 -62 4 1445 378 61 0 0 chr9 112750782 112750831 -11325341 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 4 1445 235 278 28 125 chr9 112750831 112750902 -11325270 + MLT1A LTR MaLR 313 370 -4 4 1445 645 337 138 46 chr9 112750902 112751386 -11324786 + MLT1A-int LTR MaLR 2 644 -727 4 1445 309 365 29 18 chr9 112751712 112751882 -11324290 + MLT1A-int LTR MaLR 971 1142 -229 4 1445 229 354 35 26 chr9 112752189 112752305 -11323867 + MLT1A LTR MaLR 222 338 -52 4 1445 189 0 0 0 chr9 112752305 112752326 -11323846 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1445 261 0 0 0 chr9 112752326 112752355 -11323817 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1445 554 306 89 0 chr9 112754360 112754540 -11321632 - ID_B1 SINE B4 -26 198 3 4 1445 282 303 38 44 chr9 112754851 112755010 -11321162 - MER3 DNA MER1_type -40 169 12 4 1445 313 247 0 0 chr9 112756813 112757005 -11319167 + (TG)n Simple_repeat Simple_repeat 1 192 0 4 1445 648 191 0 0 chr9 112757029 112757207 -11318965 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1445 273 198 0 0 chr9 112757192 112757293 -11318879 + (TCTCTG)n Simple_repeat Simple_repeat 4 104 0 4 1445 600 116 0 0 chr9 112757314 112757409 -11318763 + (TA)n Simple_repeat Simple_repeat 2 96 0 4 1445 261 161 0 81 chr9 112757423 112757572 -11318600 + (TCTCTG)n Simple_repeat Simple_repeat 4 140 0 4 1445 281 265 0 10 chr9 112757580 112757683 -11318489 + (TG)n Simple_repeat Simple_repeat 2 103 0 4 1445 624 335 92 19 chr9 112758242 112758513 -11317659 + B4A SINE B4 2 292 0 4 1445 343 83 16 16 chr9 112758522 112758583 -11317589 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1445 1390 166 333 3 chr9 112758861 112759176 -11316996 - MTC LTR MaLR -2 419 1 4 1445 3271 216 58 87 chr9 112759177 112760254 -11315918 - MTC-int LTR MaLR -9 1089 45 4 1445 1259 221 15 211 chr9 112760267 112760788 -11315384 - MTD LTR MaLR 0 419 1 4 1445 233 336 0 97 chr9 112760854 112760999 -11315173 - ID_B1 SINE B4 -1 223 93 4 1445 1133 241 0 89 chr9 112762300 112762614 -11313558 + B4 SINE B4 1 286 -6 4 1445 225 175 0 0 chr9 112762621 112762661 -11313511 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1445 1162 269 49 19 chr9 112764449 112764817 -11311355 + MTEa LTR MaLR 1 379 0 4 1445 405 0 0 0 chr9 112765082 112765127 -11311045 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1445 1061 268 59 32 chr9 112765689 112766028 -11310144 + MTEb LTR MaLR 1 348 -31 4 1445 228 333 0 12 chr9 112767042 112767124 -11309048 - HAL1 LINE L1 -746 1761 1681 4 1445 414 0 0 0 chr9 112767190 112767236 -11308936 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1445 207 100 0 0 chr9 112767244 112767274 -11308898 + (AGGGGG)n Simple_repeat Simple_repeat 2 31 0 4 1445 476 288 14 14 chr9 112767372 112767520 -11308652 - B4 SINE B4 -107 185 38 4 1445 318 322 85 43 chr9 112767601 112767789 -11308383 - HAL1 LINE L1 -2278 229 34 4 1445 388 188 12 0 chr9 112768042 112768122 -11308050 + MLT1C LTR MaLR 45 125 -342 4 1445 510 310 39 22 chr9 112768161 112768339 -11307833 + MLT1C LTR MaLR 287 467 0 4 1445 353 368 16 10 chr9 112768415 112768607 -11307565 + MLT1C-int LTR MaLR 408 600 -771 4 1445 440 312 72 63 chr9 112768765 112769083 -11307089 + MLT1C-int LTR MaLR 1033 1353 -18 4 1445 289 306 8 24 chr9 112769339 112769463 -11306709 + MLT1C LTR MaLR 252 373 -17 4 1445 3269 53 2 33 chr9 112769809 112770235 -11305937 + L1_Mus1 LINE L1 6155 6567 0 4 1445 287 381 176 21 chr9 112770371 112770655 -11305517 + MER115 DNA Tip100 50 377 -316 4 1445 292 213 18 0 chr9 112770724 112770808 -11305364 - ORR1B1 LTR MaLR 0 384 255 4 1445 1974 271 45 24 chr9 112770808 112771360 -11304812 - Lx5 LINE L1 -9 7041 6478 4 1445 2215 135 10 127 chr9 112772172 112773227 -11302945 + L1VL2 LINE L1 661 1550 -2362 4 1445 1617 164 101 3 chr9 112773232 112773549 -11302623 - ORR1B1 LTR MaLR -46 348 1 4 1445 531 206 32 151 chr9 112774020 112774272 -11301900 - RCHARR1 DNA MER1_type -3 971 750 4 1445 1774 246 20 11 chr9 112774292 112774732 -11301440 - RCHARR1 DNA MER1_type -530 444 1 4 1445 244 290 26 86 chr9 112775193 112775310 -11300862 + RSINE1 SINE B4 20 129 -36 4 1445 504 32 0 0 chr9 112775321 112775383 -11300789 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1445 25 31 0 0 chr9 112775391 112775423 -11300749 + AT_rich Low_complexity Low_complexity 1 32 0 4 1445 370 122 0 39 chr9 112777393 112777470 -11298702 + CT-rich Low_complexity Low_complexity 3 76 0 4 1445 427 124 20 20 chr9 112777472 112777571 -11298601 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 4 1445 620 278 55 62 chr9 112777576 112777960 -11298212 - BGLII_B LTR ERVK -60 381 1 4 1445 503 221 89 39 chr9 112777960 112778139 -11298033 - MYSERV-int LTR ERVK 0 6550 6363 4 1445 567 186 0 0 chr9 112778272 112778374 -11297798 - MYSERV6-int LTR ERVK -217 8742 8641 4 1445 503 317 19 5 chr9 112778684 112778890 -11297282 - L1MA4 LINE L1 -412 5888 5680 4 1445 296 299 174 29 chr9 112779897 112780069 -11296103 - L1MDa LINE L1 -5773 860 664 4 1445 1532 179 35 9 chr9 112780452 112780767 -11295405 + ORR1B2 LTR MaLR 33 355 -12 4 1445 439 279 28 88 chr9 112781691 112781907 -11294265 + CYRA11_Mm Unknown Y-chromosome 182 384 -233 4 1445 1168 141 10 5 chr9 112781717 112781909 -11294263 - URR1B DNA MER1_type -32 193 1 4 1445 657 271 17 92 chr9 112782380 112782620 -11293552 - MTE2a LTR MaLR -153 226 5 4 1445 744 36 36 0 chr9 112782647 112782758 -11293414 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 4 1445 261 57 0 0 chr9 112782793 112782828 -11293344 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1445 586 222 78 7 chr9 112783161 112783315 -11292857 + MTE2a LTR MaLR 213 377 -2 4 1445 1555 179 19 8 chr9 112783470 112783801 -11292371 - ORR1B1 LTR MaLR -2 392 1 4 1445 345 282 48 87 chr9 112783969 112784175 -11291997 + B3A SINE B2 1 198 0 4 1445 330 316 25 8 chr9 112784201 112784319 -11291853 + PB1D7 SINE Alu 1 120 0 4 1445 871 171 20 7 chr9 112784321 112784468 -11291704 + B1_Mur1 SINE Alu 1 149 0 4 1445 401 155 27 9 chr9 112785045 112785156 -11291016 + (TG)n Simple_repeat Simple_repeat 2 114 0 4 1445 501 316 63 115 chr9 112785199 112785485 -11290687 + B4A SINE B4 17 287 -5 4 1445 306 256 11 0 chr9 112785492 112785582 -11290590 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 1445 271 192 84 75 chr9 112785633 112785740 -11290432 + L1MD LINE L1 4661 4768 -1378 5 1445 507 246 7 44 chr9 112785980 112786116 -11290056 - ID_B1 SINE B4 -8 216 86 5 1445 312 27 0 0 chr9 112786251 112786288 -11289884 + (TTG)n Simple_repeat Simple_repeat 3 39 0 5 1445 372 103 0 0 chr9 112786288 112786346 -11289826 + (TGG)n Simple_repeat Simple_repeat 1 58 0 5 1445 610 275 48 0 chr9 112787074 112787241 -11288931 - MLT1B LTR MaLR -15 375 201 5 1445 241 292 0 0 chr9 112787307 112787372 -11288800 - MLT1B LTR MaLR -318 72 8 5 1445 416 279 0 114 chr9 112787436 112787594 -11288578 + ID_B1 SINE B4 79 218 -6 5 1445 198 0 0 0 chr9 112787685 112787707 -11288465 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1445 207 0 0 0 chr9 112787707 112787730 -11288442 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1445 815 46 9 0 chr9 112787737 112787845 -11288327 + (GA)n Simple_repeat Simple_repeat 2 110 0 5 1445 567 0 0 0 chr9 112788119 112788182 -11287990 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1445 297 0 0 0 chr9 112788184 112788217 -11287955 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1445 354 358 36 32 chr9 112788225 112788525 -11287647 + L2 LINE L2 2431 2731 -688 5 1445 486 0 0 0 chr9 112788525 112788579 -11287593 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1445 36 23 0 0 chr9 112788607 112788650 -11287522 + AT_rich Low_complexity Low_complexity 1 43 0 5 1445 232 316 0 0 chr9 112788681 112788760 -11287412 - Lx8 LINE L1 -2 7471 7393 5 1445 351 0 0 0 chr9 112788829 112788868 -11287304 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1445 451 273 27 59 chr9 112788880 112789067 -11287105 - B3A SINE B2 -16 182 2 5 1445 219 343 66 33 chr9 112789068 112789309 -11286863 + L2 LINE L2 2723 2971 -448 5 1445 379 348 104 24 chr9 112789664 112789914 -11286258 + Lx8 LINE L1 7202 7471 -2 5 1445 29 47 0 0 chr9 112789945 112789988 -11286184 + AT_rich Low_complexity Low_complexity 1 43 0 5 1445 739 260 88 5 chr9 112790343 112790548 -11285624 - ID_B1 SINE B4 0 224 3 5 1445 282 106 0 0 chr9 112791799 112791846 -11284326 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 5 1445 230 318 46 18 chr9 112793359 112793468 -11282704 - ORR1D2 LTR MaLR -258 112 1 5 1445 286 283 112 9 chr9 112794357 112794464 -11281708 + MTEa LTR MaLR 23 140 -239 5 1445 665 324 83 60 chr9 112794375 112794842 -11281330 + MT2A LTR ERVL 56 533 0 5 1445 898 224 20 110 chr9 112794998 112795299 -11280873 + RMER6B LTR ERVK 187 460 -1 5 1445 407 311 102 42 chr9 112795326 112795591 -11280581 - LTR16A1 LTR ERVL -9 447 167 5 1445 702 55 0 0 chr9 112795992 112796083 -11280089 + (GA)n Simple_repeat Simple_repeat 1 91 0 5 1445 333 0 0 0 chr9 112796842 112796879 -11279293 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1445 273 320 0 10 chr9 112796910 112797008 -11279164 + (TATG)n Simple_repeat Simple_repeat 2 98 0 5 1445 807 244 79 36 chr9 112797009 112797286 -11278886 - B4A SINE B4 0 292 4 5 1445 1027 107 11 0 chr9 112798689 112798867 -11277305 + (GGATG)n Simple_repeat Simple_repeat 1 180 0 5 1445 552 300 30 37 chr9 112799030 112799300 -11276872 + B4A SINE B4 3 270 -22 5 1445 417 39 0 0 chr9 112799300 112799351 -11276821 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1445 234 0 0 0 chr9 112799351 112799377 -11276795 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1445 457 281 0 59 chr9 112799395 112799531 -11276641 + RSINE1 SINE B4 12 139 -26 5 1445 416 285 51 0 chr9 112799700 112799837 -11276335 + RSINE1 SINE B4 3 146 -19 5 1445 460 130 22 0 chr9 112799863 112799955 -11276217 + (CATA)n Simple_repeat Simple_repeat 1 94 0 5 1445 8304 80 33 9 chr9 112800459 112801627 -11274545 + Lx3_Mus LINE L1 5813 7008 -1 5 1445 23 0 0 0 chr9 112802388 112802411 -11273761 + AT_rich Low_complexity Low_complexity 1 23 0 5 1445 567 280 118 10 chr9 112802861 112803056 -11273116 - B3 SINE B2 0 216 1 5 1445 374 57 19 0 chr9 112803447 112803500 -11272672 + (GGA)n Simple_repeat Simple_repeat 2 55 0 5 1445 367 360 6 11 chr9 112803523 112803700 -11272472 + GA-rich Low_complexity Low_complexity 2 177 0 5 1445 204 67 0 0 chr9 112804371 112804401 -11271771 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 5 1445 531 0 0 0 chr9 112804455 112804514 -11271658 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1445 537 16 0 0 chr9 112805100 112805162 -11271010 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 1445 932 226 33 16 chr9 112805175 112805418 -11270754 - B4 SINE B4 -45 247 1 5 1445 180 152 0 0 chr9 112805427 112805460 -11270712 + CT-rich Low_complexity Low_complexity 4 36 0 5 1445 561 105 0 0 chr9 112805458 112805553 -11270619 + (TCC)n Simple_repeat Simple_repeat 3 97 0 5 1445 279 0 0 0 chr9 112805558 112805589 -11270583 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1445 1092 243 60 12 chr9 112805924 112806257 -11269915 - ORR1E LTR MaLR 0 359 11 5 1445 505 197 83 25 chr9 112806534 112806654 -11269518 + B1_Mur1 SINE Alu 22 148 -1 5 1445 387 0 0 0 chr9 112806873 112806916 -11269256 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1445 480 252 16 16 chr9 112806988 112807113 -11269059 - ID_B1 SINE B4 -4 220 96 5 1445 309 286 64 57 chr9 112807113 112807125 -11269047 - B1F1 SINE Alu -1 144 7 5 1445 512 311 11 0 chr9 112807125 112807308 -11268864 - L1ME3 LINE L1 -254 5908 5724 5 1445 272 130 32 11 chr9 112807312 112807405 -11268767 + T-rich Low_complexity Low_complexity 3 97 0 5 1445 347 55 0 18 chr9 112807405 112807460 -11268712 + (GTTTG)n Simple_repeat Simple_repeat 1 54 0 5 1445 226 286 52 0 chr9 112809240 112809317 -11266855 - B4 SINE B4 -211 81 1 5 1445 798 278 31 55 chr9 112809379 112809672 -11266500 - ORR1E LTR MaLR -72 287 2 5 1445 438 127 0 0 chr9 112809941 112810012 -11266160 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1445 270 280 0 48 chr9 112810016 112810121 -11266051 + (TATATG)n Simple_repeat Simple_repeat 5 104 0 5 1445 324 0 0 0 chr9 112810832 112810868 -11265304 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1445 386 296 0 36 chr9 112811198 112811310 -11264862 + PB1D7 SINE Alu 1 108 -12 5 1445 1397 197 194 0 chr9 112812871 112813222 -11262950 + MTD LTR MaLR 1 419 0 5 1445 21 0 0 0 chr9 112814138 112814159 -11262013 + AT_rich Low_complexity Low_complexity 1 21 0 5 1445 453 298 0 184 chr9 112814335 112814418 -11261754 + B3A SINE B2 1 49 -149 5 1445 1087 110 0 0 chr9 112814418 112814563 -11261609 - B1_Mus2 SINE Alu -2 145 1 5 1445 453 298 0 184 chr9 112814563 112814718 -11261454 + B3A SINE B2 50 195 -3 5 1445 1221 93 0 0 chr9 112815147 112815351 -11260821 + (GAA)n Simple_repeat Simple_repeat 1 204 0 5 1445 1409 231 71 11 chr9 112815661 112816042 -11260130 + MTD LTR MaLR 2 405 -14 5 1445 233 250 45 30 chr9 112816070 112816136 -11260036 + B4 SINE B4 98 164 -128 5 1445 483 315 7 26 chr9 112816207 112816360 -11259812 - MTEa LTR MaLR -229 150 1 5 1445 625 285 60 60 chr9 112816606 112816835 -11259337 + MTD LTR MaLR 5 233 -186 5 1445 1281 164 12 29 chr9 112816835 112817079 -11259093 + RLTR12A LTR ERVK 3 242 -326 5 1445 768 22 0 0 chr9 112817080 112817170 -11259002 + (GA)n Simple_repeat Simple_repeat 1 90 0 5 1445 343 234 79 34 chr9 112817170 112817342 -11258830 + RLTR12A LTR ERVK 380 559 -9 5 1445 492 228 15 23 chr9 112817451 112817581 -11258591 + MTD LTR MaLR 276 404 -15 5 1445 771 225 88 26 chr9 112820281 112820473 -11255699 + B3 SINE B2 2 205 -11 5 1445 5903 108 7 3 chr9 112820479 112821484 -11254688 + Lx LINE L1 5371 6363 -291 5 1445 503 269 54 88 chr9 112821950 112822154 -11254018 + B4 SINE B4 17 213 -79 5 1445 496 243 0 19 chr9 112822164 112822269 -11253903 - Lx7 LINE L1 -812 6884 6782 5 1445 1325 259 84 11 chr9 112822270 112822649 -11253523 + Lx7 LINE L1 6926 7332 -364 5 1445 267 173 0 0 chr9 112822688 112822740 -11253432 + GA-rich Low_complexity Low_complexity 1 52 0 5 1445 484 134 31 49 chr9 112822809 112823099 -11253073 + (CA)n Simple_repeat Simple_repeat 1 284 0 5 1445 233 102 33 33 chr9 112823114 112823175 -11252997 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1445 367 332 54 50 chr9 112824247 112824526 -11251646 + B4A SINE B4 13 292 0 5 1445 3307 53 53 2 chr9 112825175 112825590 -11250582 + RLTR10C LTR ERVK 1 436 0 5 1445 219 69 0 0 chr9 112825603 112825632 -11250540 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 5 1445 479 263 58 29 chr9 112825943 112826080 -11250092 + B1_Mur2 SINE Alu 2 142 -7 5 1445 233 256 0 0 chr9 112826080 112826123 -11250049 + G-rich Low_complexity Low_complexity 5 47 0 5 1445 983 81 29 11 chr9 112826126 112826301 -11249871 + (GGA)n Simple_repeat Simple_repeat 1 178 0 5 1445 346 139 11 11 chr9 112826686 112826773 -11249399 + (CA)n Simple_repeat Simple_repeat 1 87 0 5 1445 180 125 0 0 chr9 112826770 112826802 -11249370 + (CCA)n Simple_repeat Simple_repeat 1 32 0 5 1445 435 173 18 9 chr9 112828949 112829060 -11247112 + (CA)n Simple_repeat Simple_repeat 1 112 0 5 1445 577 232 99 23 chr9 112829569 112829741 -11246431 + B4A SINE B4 108 292 0 5 1445 215 219 0 0 chr9 112829741 112829782 -11246390 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1445 473 261 148 0 chr9 112831246 112831388 -11244784 - RSINE1 SINE B4 0 165 3 5 1445 528 16 0 0 chr9 112831435 112831496 -11244676 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1445 180 0 0 0 chr9 112832345 112832365 -11243807 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1445 557 178 0 0 chr9 112832573 112832663 -11243509 + 4.5SRNA scRNA scRNA 2 91 -3 5 1445 1146 69 0 0 chr9 112832666 112832810 -11243362 + B1_Mus1 SINE Alu 5 148 0 5 1445 350 265 256 12 chr9 112833922 112834094 -11242078 - B3 SINE B2 0 216 3 5 1445 408 40 0 0 chr9 112834121 112834171 -11242001 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1445 295 289 52 13 chr9 112834991 112835005 -11241167 - B4A SINE B4 -127 165 118 5 1445 310 250 0 0 chr9 112835005 112835061 -11241111 - B1F1 SINE Alu -87 62 7 5 1445 7308 26 2 2 chr9 112835171 112836024 -11240148 + L1Md_F2 LINE L1 5727 6579 -3 6 1445 1271 269 23 41 chr9 112836039 112836384 -11239788 - MTE2b LTR MaLR -40 339 1 6 1445 5610 122 50 4 chr9 112836682 112837593 -11238579 - RMER17B LTR ERVK -5 953 1 6 1445 183 42 0 0 chr9 112837729 112837753 -11238419 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1445 566 268 101 82 chr9 112838246 112838514 -11237658 + B4 SINE B4 3 275 -17 6 1445 522 0 0 0 chr9 112838514 112838572 -11237600 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1445 680 198 0 23 chr9 112838590 112838719 -11237453 - B1_Mur1 SINE Alu -5 144 19 6 1445 370 203 135 34 chr9 112838865 112838996 -11237176 - MLT1A1 LTR MaLR -10 398 226 6 1445 856 229 23 28 chr9 112839301 112839517 -11236655 + B3 SINE B2 2 216 0 6 1445 268 266 6 17 chr9 112840026 112840206 -11235966 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 1445 394 324 6 6 chr9 112840207 112840423 -11235749 + (TG)n Simple_repeat Simple_repeat 1 216 0 6 1445 316 341 6 11 chr9 112840358 112840536 -11235636 + (TATG)n Simple_repeat Simple_repeat 4 180 0 6 1445 387 335 17 0 chr9 112840485 112840661 -11235511 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1445 288 0 0 0 chr9 112841726 112841758 -11234414 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1445 420 200 74 0 chr9 112842124 112842219 -11233953 - Lx4B LINE L1 -92 6966 6865 6 1445 1601 207 25 9 chr9 112842225 112842551 -11233621 + Lx2B LINE L1 6665 6995 -5 6 1445 2337 175 168 3 chr9 112842571 112843183 -11232989 + L1_Mur3 LINE L1 1640 2352 -3528 6 1445 29 0 0 0 chr9 112843326 112843355 -11232817 + AT_rich Low_complexity Low_complexity 1 29 0 6 1445 621 199 6 88 chr9 112844667 112844827 -11231345 - MT2B LTR ERVL 0 601 455 6 1445 758 268 6 23 chr9 112844842 112845018 -11231154 + B4 SINE B4 31 203 -89 6 1445 1361 271 46 0 chr9 112845023 112845370 -11230802 - MTE2b LTR MaLR -4 375 13 6 1445 325 280 24 41 chr9 112845262 112845385 -11230787 - MT2A LTR ERVL -412 121 1 6 1445 383 318 0 11 chr9 112845385 112845473 -11230699 + B4 SINE B4 202 288 -4 6 1445 782 225 110 101 chr9 112846260 112846564 -11229608 + RMER20B LTR ERVK 90 399 -228 6 1445 396 0 0 0 chr9 112846564 112846608 -11229564 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1445 782 225 110 101 chr9 112846608 112846620 -11229552 + RMER20B LTR ERVK 400 409 -218 6 1445 22 35 0 0 chr9 112846753 112846782 -11229390 + AT_rich Low_complexity Low_complexity 1 29 0 6 1445 369 0 0 0 chr9 112846840 112846881 -11229291 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1445 468 189 113 35 chr9 112847257 112847372 -11228800 - MLT1A LTR MaLR -20 354 231 6 1445 948 284 117 18 chr9 112847374 112847697 -11228475 - MTE2b LTR MaLR -2 357 20 6 1445 2994 67 39 7 chr9 112847943 112848351 -11227821 + L1Md_F2 LINE L1 6162 6582 0 6 1445 245 341 35 0 chr9 112849063 112849148 -11227024 - MLT1A LTR MaLR 0 374 287 6 1445 265 227 0 15 chr9 112849163 112849230 -11226942 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1445 1910 160 46 27 chr9 112849265 112849638 -11226534 - ORR1B1 LTR MaLR -14 380 1 6 1445 786 155 12 20 chr9 112849640 112849799 -11226373 - ORR1B1-int LTR MaLR -2 1368 1232 6 1445 592 271 141 53 chr9 112849835 112850155 -11226017 - ORR1B1-int LTR MaLR -1387 348 1 6 1445 668 370 106 3 chr9 112850184 112850661 -11225511 + MER44B DNA MER2_type 1 534 -16 6 1445 465 231 20 0 chr9 112850737 112850884 -11225288 + GA-rich Low_complexity Low_complexity 4 153 0 6 1445 278 205 13 0 chr9 112851862 112851940 -11224232 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1445 225 237 90 33 chr9 112851944 112852066 -11224106 - Lx9 LINE L1 -128 7516 7388 6 1445 182 62 0 30 chr9 112852093 112852126 -11224046 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1446 939 266 127 9 chr9 112853789 112854112 -11222060 - MLT1B LTR MaLR -19 371 11 6 1446 378 273 23 0 chr9 112854209 112854297 -11221875 + B3 SINE B2 1 90 -126 6 1446 2095 185 21 5 chr9 112854300 112854675 -11221497 + ORR1B1 LTR MaLR 1 381 -13 6 1446 337 294 14 131 chr9 112854676 112854821 -11221351 + B3 SINE B2 89 216 0 6 1446 194 128 0 25 chr9 112854846 112854886 -11221286 + GA-rich Low_complexity Low_complexity 3 41 0 6 1446 1202 21 7 0 chr9 112855334 112855479 -11220693 + (GGGAGA)n Simple_repeat Simple_repeat 4 149 0 6 1446 192 374 63 58 chr9 112856380 112856570 -11219602 + MIRb SINE MIR 78 268 0 6 1446 540 323 132 69 chr9 112857872 112858176 -11217996 + ORR1E LTR MaLR 9 330 -29 6 1446 1085 95 0 7 chr9 112858176 112858324 -11217848 - B1_Mm SINE Alu 0 147 1 6 1446 325 355 67 91 chr9 112858324 112858394 -11217778 + ORR1E LTR MaLR 307 374 0 6 1446 1302 191 4 0 chr9 112858496 112858758 -11217414 + L1Md_F LINE L1 179 441 -6078 6 1446 248 32 0 0 chr9 112858750 112858781 -11217391 + L1Md_F LINE L1 573 603 -5916 6 1446 6122 60 10 1 chr9 112875471 112876293 -11199879 + L1Md_F2 LINE L1 4758 5586 -297 6 1446 8061 50 0 2 chr9 112876293 112877279 -11198893 + L1Md_F2 LINE L1 5587 6570 -12 6 1446 4524 117 29 26 chr9 112877399 112878127 -11198045 - Lx LINE L1 0 6654 5925 6 1446 1291 252 109 6 chr9 112879075 112879414 -11196758 - MTE2b LTR MaLR -5 374 1 6 1446 516 265 87 17 chr9 112880533 112880706 -11195466 + B3A SINE B2 1 185 -13 6 1446 690 251 127 63 chr9 112880889 112881314 -11194858 + L1MC2 LINE L1 5546 5997 -347 6 1446 1096 217 112 107 chr9 112881316 112881735 -11194437 - MTC LTR MaLR 0 421 1 6 1446 3422 154 19 2 chr9 112881958 112882523 -11193649 - RMER15 LTR ERVL 0 575 1 6 1446 600 218 196 5 chr9 112883069 112883258 -11192914 + URR1B DNA MER1_type 1 225 0 6 1446 618 330 55 29 chr9 112883699 112883974 -11192198 + B4A SINE B4 1 282 -10 6 1446 423 83 0 0 chr9 112883987 112884047 -11192125 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1446 940 288 14 125 chr9 112884406 112884831 -11191341 - MTE2a LTR MaLR 0 379 2 6 1446 471 288 70 25 chr9 112886432 112886589 -11189583 + B3A SINE B2 1 164 -34 6 1446 278 228 66 26 chr9 112886663 112886788 -11189384 - MIRm SINE MIR -65 197 79 6 1446 48 77 0 0 chr9 112887200 112887304 -11188868 + AT_rich Low_complexity Low_complexity 1 104 0 6 1446 28 0 0 0 chr9 112887328 112887356 -11188816 + AT_rich Low_complexity Low_complexity 1 28 0 6 1446 406 272 147 4 chr9 112887842 112888067 -11188105 - L1MD2 LINE L1 -213 6146 5890 6 1446 327 379 27 14 chr9 112888103 112888325 -11187847 - L1MD2 LINE L1 -426 5816 5592 6 1446 308 232 8 0 chr9 112888450 112888575 -11187597 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 6 1446 449 306 14 36 chr9 112888576 112888715 -11187457 - B4A SINE B4 -152 140 5 6 1446 642 245 73 24 chr9 112889160 112889365 -11186807 - B3 SINE B2 -1 215 1 6 1446 1098 114 2 0 chr9 112889501 112890160 -11186012 + (TG)n Simple_repeat Simple_repeat 1 660 0 6 1446 442 374 16 60 chr9 112890162 112890347 -11185825 - B4 SINE B4 -115 177 1 6 1446 258 160 0 0 chr9 112891373 112891423 -11184749 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1446 288 265 62 109 chr9 112891429 112891670 -11184502 - RSINE1 SINE B4 -18 274 81 6 1446 37362 24 2 26 chr9 112892594 112897954 -11178218 + L1Md_A LINE L1 416 5609 -274 6 1446 4783 27 0 2 chr9 112898986 112899511 -11176661 + L1Md_A LINE L1 6059 6582 0 6 1446 489 321 9 3 chr9 112899886 112900245 -11175927 + (TG)n Simple_repeat Simple_repeat 1 361 0 6 1446 701 321 109 19 chr9 112900265 112900532 -11175640 - B4 SINE B4 0 292 2 6 1446 249 33 0 0 chr9 112900687 112900717 -11175455 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1446 632 302 88 44 chr9 112901074 112901393 -11174779 - MLT1B LTR MaLR -17 373 41 6 1446 281 264 74 8 chr9 112901436 112901558 -11174614 + L1MC LINE L1 4304 4433 -1713 6 1446 572 338 121 10 chr9 112901609 112902090 -11174082 + L1MA4 LINE L1 5373 5906 -394 6 1446 511 309 34 22 chr9 112902500 112902679 -11173493 + MLT1B LTR MaLR 202 382 -8 6 1446 251 252 108 36 chr9 112902682 112902793 -11173379 + L1MC LINE L1 4674 4792 -1354 6 1446 648 120 0 0 chr9 112903240 112903340 -11172832 + (TCCC)n Simple_repeat Simple_repeat 2 101 0 6 1446 207 0 0 0 chr9 112903340 112903363 -11172809 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1446 532 347 29 17 chr9 112903363 112903536 -11172636 - B3A SINE B2 -23 175 1 6 1446 1492 267 77 48 chr9 112903607 112904398 -11171774 - L1MA6 LINE L1 -286 6014 5152 6 1446 729 268 34 14 chr9 112904433 112904641 -11171531 - B3 SINE B2 0 216 5 6 1446 254 222 37 12 chr9 112904706 112904788 -11171384 + L1MA6 LINE L1 6091 6174 -126 6 1446 258 271 57 119 chr9 112905092 112905251 -11170921 + L1MC1 LINE L1 6172 6320 -13 6 1446 437 293 33 20 chr9 112905258 112905408 -11170764 + Lx8 LINE L1 7102 7253 -220 6 1446 465 19 0 0 chr9 112905708 112905762 -11170410 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1446 392 247 32 21 chr9 112905897 112905992 -11170180 + PB1D10 SINE Alu 13 108 -9 6 1446 234 292 30 30 chr9 112906795 112906862 -11169310 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 6 1446 228 172 0 0 chr9 112906878 112906936 -11169236 + T-rich Low_complexity Low_complexity 1 58 0 6 1446 1236 56 7 0 chr9 112906939 112907082 -11169090 - B1_Mm SINE Alu 0 147 4 6 1446 930 288 156 18 chr9 112907127 112907389 -11168783 + MTD LTR MaLR 20 330 -89 6 1446 3571 33 5 0 chr9 112907389 112907783 -11168389 + MTA_Mm LTR MaLR 1 396 0 6 1446 930 288 156 18 chr9 112907783 112907859 -11168313 + MTD LTR MaLR 331 405 -14 6 1446 7828 204 95 1 chr9 112908054 112908080 -11168092 - L1_Mur2 LINE L1 -920 4957 4932 6 1446 4795 50 11 0 chr9 112908080 112908640 -11167532 + L1Md_F2 LINE L1 6005 6570 -12 6 1446 7828 204 95 1 chr9 112908640 112909379 -11166793 - L1_Mur2 LINE L1 -946 4931 4057 6 1446 311 0 26 0 chr9 112909379 112909418 -11166754 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1446 7828 204 95 1 chr9 112909418 112910141 -11166031 - L1_Mur2 LINE L1 -1821 4056 3330 6 1446 4902 174 15 2 chr9 112910128 112910997 -11165175 + L1_Mur2 LINE L1 4955 5834 -43 6 1446 4958 85 11 5 chr9 112910988 112911653 -11164519 + L1_Mus1 LINE L1 5899 6567 0 6 1446 321 89 0 0 chr9 112911665 112911710 -11164462 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 6 1446 6157 211 63 3 chr9 112911710 112912851 -11163321 + Lx2B LINE L1 5784 7000 0 6 1446 349 322 127 6 chr9 112912879 112913060 -11163112 - B3 SINE B2 -13 203 1 6 1446 409 335 67 20 chr9 112913215 112913620 -11162552 - L1M5 LINE L1 -1519 4627 4204 6 1446 1379 161 211 14 chr9 112914003 112914292 -11161880 + ORR1B2 LTR MaLR 3 348 -19 7 1446 381 22 0 0 chr9 112914316 112914362 -11161810 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1446 540 0 0 0 chr9 112915718 112915778 -11160394 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1446 1146 211 20 0 chr9 112915862 112916066 -11160106 + B3 SINE B2 4 211 -5 7 1446 239 244 76 61 chr9 112916370 112916501 -11159671 - Lx8 LINE L1 -3 7470 7338 7 1446 797 294 129 20 chr9 112916543 112916838 -11159334 - Lx8 LINE L1 -329 7144 6818 7 1446 475 301 159 13 chr9 112917410 112917642 -11158530 + RMER15 LTR ERVL 294 559 -16 7 1446 727 271 39 0 chr9 112918949 112919152 -11157020 + L1MB4 LINE L1 27 237 -6370 7 1446 598 183 35 0 chr9 112919559 112919674 -11156498 + Lx9 LINE L1 6899 7017 -627 7 1446 330 262 123 116 chr9 112919674 112919812 -11156360 + B3A SINE B2 44 182 -16 7 1446 587 275 118 47 chr9 112919841 112920879 -11155293 + L1MB4 LINE L1 2286 3403 -3344 7 1446 1207 209 76 135 chr9 112920904 112921207 -11154965 + ORR1D1 LTR MaLR 25 294 -80 7 1446 2709 42 0 6 chr9 112921207 112921522 -11154650 - L1Md_F2 LINE L1 -12 6570 6258 7 1446 1207 209 76 135 chr9 112921522 112921588 -11154584 + ORR1D1 LTR MaLR 295 371 -3 7 1446 479 322 165 49 chr9 112921872 112922339 -11153833 - MLT1H LTR MaLR -3 546 31 7 1446 919 93 6 24 chr9 112923759 112923925 -11152247 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 7 1446 426 69 0 0 chr9 112923925 112923982 -11152190 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1446 573 105 0 0 chr9 112924473 112924568 -11151604 + (TG)n Simple_repeat Simple_repeat 1 95 0 7 1446 496 240 80 0 chr9 112924571 112924671 -11151501 - B3 SINE B2 -29 187 80 7 1446 2084 150 66 28 chr9 112925628 112925992 -11150180 + ORR1C1 LTR MaLR 1 378 0 7 1446 1817 203 27 21 chr9 112926027 112926399 -11149773 - ORR1D1 LTR MaLR 0 374 1 7 1446 272 0 79 0 chr9 112926536 112926574 -11149598 + (GGGAGA)n Simple_repeat Simple_repeat 1 41 0 7 1446 197 196 0 18 chr9 112926601 112926658 -11149514 + GA-rich Low_complexity Low_complexity 1 56 0 7 1446 322 410 63 16 chr9 112926751 112927006 -11149166 + L1MEf LINE L1 471 737 -5810 7 1446 238 217 22 0 chr9 112927092 112927138 -11149034 + ORR1D1 LTR MaLR 23 69 -305 7 1446 366 335 58 42 chr9 112927276 112927466 -11148706 + L1MEf LINE L1 813 1005 -5542 7 1446 421 303 106 34 chr9 112927451 112927687 -11148485 + Lx8 LINE L1 7221 7473 0 7 1446 373 372 42 50 chr9 112927700 112928104 -11148068 + L1MEf LINE L1 1014 1414 -5226 7 1446 812 228 105 11 chr9 112928163 112928354 -11147818 + B3 SINE B2 2 210 -6 7 1446 595 345 36 29 chr9 112929132 112929407 -11146765 + B4A SINE B4 16 292 0 7 1446 2100 89 53 0 chr9 112929527 112929830 -11146342 - ORR1A2 LTR MaLR -8 319 1 7 1446 360 0 0 0 chr9 112931412 112931452 -11144720 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1446 37 0 0 0 chr9 112931888 112931925 -11144247 + AT_rich Low_complexity Low_complexity 1 37 0 7 1446 651 249 59 128 chr9 112931958 112932161 -11144011 + B3A SINE B2 1 189 -6 7 1446 375 323 78 93 chr9 112932360 112932961 -11143211 - L1ME1 LINE L1 -83 6096 5505 7 1446 205 53 79 0 chr9 112933009 112933047 -11143125 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 7 1446 275 276 9 0 chr9 112933405 112933510 -11142662 - L1MD LINE L1 -1098 5048 4943 7 1446 393 303 53 29 chr9 112933564 112933801 -11142371 + L1MA4 LINE L1 5736 5977 -212 7 1446 238 234 47 0 chr9 112934048 112934112 -11142060 - L1MD LINE L1 -2686 3460 3394 7 1446 312 283 91 58 chr9 112934211 112934541 -11141631 - L1MD LINE L1 -3423 2723 2383 7 1446 295 280 53 21 chr9 112935216 112935311 -11140861 + Lx7 LINE L1 7210 7307 -389 7 1446 438 20 0 0 chr9 112935327 112935378 -11140794 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1446 21 36 0 0 chr9 112935456 112935484 -11140688 + AT_rich Low_complexity Low_complexity 1 28 0 7 1446 800 323 18 25 chr9 112935928 112936255 -11139917 + Lx9 LINE L1 7125 7449 -195 7 1446 191 103 26 0 chr9 112936258 112936297 -11139875 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 7 1446 506 211 6 0 chr9 112936304 112936479 -11139693 + (TG)n Simple_repeat Simple_repeat 1 176 0 7 1446 350 221 0 11 chr9 112936479 112936566 -11139606 + (TCTG)n Simple_repeat Simple_repeat 4 89 0 7 1446 653 158 17 6 chr9 112936570 112936748 -11139424 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1446 422 115 0 22 chr9 112936786 112936875 -11139297 + (TCTCTG)n Simple_repeat Simple_repeat 6 92 0 7 1446 402 21 0 0 chr9 112936872 112936919 -11139253 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1446 419 186 0 0 chr9 112939106 112939176 -11136996 + RSINE1 SINE B4 3 72 -93 7 1446 2077 144 55 0 chr9 112939377 112939689 -11136483 + ORR1A4 LTR MaLR 1 329 0 7 1446 9127 284 25 53 chr9 112939689 112941708 -11134464 + ORR1A4-int LTR MaLR 1 1963 0 7 1446 2293 101 41 0 chr9 112941708 112942024 -11134148 + ORR1A4 LTR MaLR 1 329 0 7 1446 840 280 157 39 chr9 112942205 112942588 -11133584 + Lx9 LINE L1 6991 7418 -226 7 1446 297 269 53 11 chr9 112944390 112944484 -11131688 + ERVL-B4-int LTR ERVL 4231 4328 -1386 7 1446 603 211 8 0 chr9 112944975 112945098 -11131074 - B1_Mur1 SINE Alu 0 149 26 7 1446 1022 240 45 0 chr9 112945251 112945451 -11130721 + B3 SINE B2 8 216 0 7 1446 449 225 0 12 chr9 112945713 112945794 -11130378 + ID2 SINE ID 2 81 -2 7 1446 1003 298 23 73 chr9 112946741 112947135 -11129037 + MTE2a LTR MaLR 31 406 -13 7 1446 414 0 0 0 chr9 112949550 112949596 -11126576 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1446 719 288 0 6 chr9 112949607 112949768 -11126404 - RSINE1 SINE B4 -4 161 2 7 1446 403 219 5 73 chr9 112952073 112952265 -11123907 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 7 1446 335 227 55 12 chr9 112952277 112952442 -11123730 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 7 1446 234 191 0 0 chr9 112952446 112952493 -11123679 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1446 234 62 0 0 chr9 112954441 112954473 -11121699 + (TTG)n Simple_repeat Simple_repeat 1 32 0 7 1446 198 209 0 0 chr9 112954876 112954919 -11121253 + (TGG)n Simple_repeat Simple_repeat 3 45 0 7 1446 216 256 0 0 chr9 112955235 112955278 -11120894 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1446 543 289 7 40 chr9 112955300 112955448 -11120724 - RSINE1 SINE B4 -15 150 8 7 1446 219 36 0 0 chr9 112956372 112956400 -11119772 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1446 22 88 0 0 chr9 112956434 112956491 -11119681 + AT_rich Low_complexity Low_complexity 1 57 0 7 1446 242 73 24 0 chr9 112956493 112956534 -11119638 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1446 414 0 0 0 chr9 112956682 112956728 -11119444 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1446 27 0 0 0 chr9 112956899 112956926 -11119246 + AT_rich Low_complexity Low_complexity 1 27 0 7 1446 31791 102 18 6 chr9 112956936 112958460 -11117712 - L1_Mus3 LINE L1 -6 6632 5097 7 1446 1146 84 0 14 chr9 112958460 112958605 -11117567 - B1_Mm SINE Alu 0 147 5 7 1446 31791 106 3 18 chr9 112958605 112963356 -11112816 - L1_Mus3 LINE L1 -787 5096 424 7 1446 436 298 141 36 chr9 112963384 112963830 -11112342 + L1M5 LINE L1 4394 4886 -1260 7 1446 359 328 79 9 chr9 112964181 112964295 -11111877 - MER67C LTR ERV1 -407 304 183 7 1446 197 65 0 31 chr9 112964334 112964366 -11111806 + (GGA)n Simple_repeat Simple_repeat 1 31 0 7 1446 786 75 0 0 chr9 112964428 112964534 -11111638 + (GGA)n Simple_repeat Simple_repeat 2 107 0 7 1446 962 162 0 6 chr9 112964582 112964762 -11111410 + GA-rich Low_complexity Low_complexity 2 180 0 7 1446 745 133 7 7 chr9 112964762 112964898 -11111274 + (GGA)n Simple_repeat Simple_repeat 3 138 0 7 1446 340 330 31 25 chr9 112965529 112965725 -11110447 + Lx7 LINE L1 7109 7305 -391 7 1446 763 168 0 144 chr9 112965858 112966032 -11110140 - B1_Mur1 SINE Alu 0 149 1 7 1446 228 250 336 0 chr9 112966036 112966140 -11110032 - B3 SINE B2 -1 215 77 7 1446 506 314 52 7 chr9 112966164 112966318 -11109854 + RSINE1 SINE B4 2 162 -3 7 1446 332 314 115 41 chr9 112967574 112967721 -11108451 + MER67C LTR ERV1 181 441 -220 7 1446 254 329 122 51 chr9 112968519 112968818 -11107354 + L1MC LINE L1 5285 5600 -2282 7 1446 473 84 14 0 chr9 112968818 112968889 -11107283 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1446 254 329 122 51 chr9 112968889 112969022 -11107150 + L1MC LINE L1 5601 5748 -2134 7 1446 293 208 158 50 chr9 112969110 112969211 -11106961 + PB1D10 SINE Alu 9 120 0 7 1446 875 235 73 29 chr9 112969300 112969506 -11106666 - B3 SINE B2 0 216 2 7 1446 870 280 47 12 chr9 112969699 112969952 -11106220 + B4A SINE B4 27 288 -4 7 1446 729 233 101 30 chr9 112971212 112971411 -11104761 - B3 SINE B2 -2 214 2 7 1446 422 303 67 0 chr9 112971608 112971773 -11104399 + L1MA5 LINE L1 6125 6300 0 7 1446 579 311 58 93 chr9 112971788 112972079 -11104093 + B4A SINE B4 12 292 0 7 1446 243 237 0 0 chr9 112972079 112972138 -11104034 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1446 420 345 28 76 chr9 112973089 112973340 -11102832 + LTR16E1 LTR ERVL 237 475 -63 7 1446 406 296 31 39 chr9 112974164 112974294 -11101878 - B1F SINE Alu -5 144 16 7 1446 324 0 0 0 chr9 112975112 112975148 -11101024 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1446 504 0 0 0 chr9 112975148 112975203 -11100969 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1446 767 313 42 14 chr9 112975204 112975418 -11100754 - B4 SINE B4 -16 276 57 7 1446 901 286 80 31 chr9 112975444 112975833 -11100339 - BGLII_B LTR ERVK -27 414 7 7 1446 303 175 0 0 chr9 112976446 112976503 -11099669 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1446 228 229 21 21 chr9 112976798 112976942 -11099230 + CT-rich Low_complexity Low_complexity 1 144 0 7 1446 248 344 31 52 chr9 112977311 112977504 -11098668 - L1MC4 LINE L1 -146 7896 7708 7 1446 392 139 13 0 chr9 112977557 112977636 -11098536 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1446 1770 203 36 8 chr9 112977643 112978000 -11098172 + MTD LTR MaLR 53 419 0 7 1446 217 24 143 0 chr9 112978043 112978085 -11098087 + CT-rich Low_complexity Low_complexity 2 49 0 7 1446 504 0 0 0 chr9 112978090 112978146 -11098026 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1446 493 258 98 119 chr9 112979121 112979398 -11096774 + B4 SINE B4 5 275 -17 7 1446 2758 99 139 2 chr9 112979980 112980404 -11095768 - RLTR45 LTR ERVK 0 482 1 8 1446 1320 253 81 36 chr9 112981192 112981577 -11094595 + MTD LTR MaLR 18 419 0 8 1446 216 359 29 19 chr9 112983909 112984014 -11092158 + G-rich Low_complexity Low_complexity 5 110 0 8 1447 201 74 0 0 chr9 112984512 112984539 -11091633 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1447 338 304 10 0 chr9 112985924 112986026 -11090146 + (TG)n Simple_repeat Simple_repeat 1 103 0 8 1447 378 272 0 0 chr9 112986040 112986296 -11089876 + (TG)n Simple_repeat Simple_repeat 1 256 0 8 1447 409 205 23 34 chr9 112986300 112986477 -11089695 + (TATG)n Simple_repeat Simple_repeat 4 178 0 8 1447 344 238 6 35 chr9 112986452 112986622 -11089550 + (TATATG)n Simple_repeat Simple_repeat 6 170 0 8 1447 312 270 0 0 chr9 112986607 112986733 -11089439 + (TG)n Simple_repeat Simple_repeat 1 126 0 8 1447 478 243 6 6 chr9 112986747 112986925 -11089247 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1447 542 288 12 70 chr9 112986929 112987101 -11089071 - RSINE1 SINE B4 -2 163 2 8 1447 390 42 0 0 chr9 112987140 112987188 -11088984 + (GGGGA)n Simple_repeat Simple_repeat 2 49 0 8 1447 210 150 0 0 chr9 112987192 112987232 -11088940 + (CGAGG)n Simple_repeat Simple_repeat 5 44 0 8 1447 706 229 79 54 chr9 112988057 112988260 -11087912 + B3 SINE B2 9 216 0 8 1447 255 288 0 0 chr9 112988586 112988645 -11087527 + RSINE1 SINE B4 107 165 0 8 1447 642 294 5 35 chr9 112988866 112989067 -11087105 - Lx8 LINE L1 -156 7317 7123 8 1447 485 68 0 83 chr9 112989315 112989411 -11086761 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 1447 595 253 230 5 chr9 112989451 112989638 -11086534 - B4 SINE B4 -63 229 1 8 1447 278 316 18 61 chr9 112989638 112989867 -11086305 + L1M2 LINE L1 4238 4456 -1687 8 1447 589 329 12 0 chr9 112991196 112991357 -11084815 + RSINE1 SINE B4 1 163 -2 8 1447 186 133 0 0 chr9 112991358 112991388 -11084784 + (CATA)n Simple_repeat Simple_repeat 2 31 0 8 1447 642 13 0 0 chr9 112991520 112991595 -11084577 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 8 1447 701 266 114 35 chr9 112991619 112991934 -11084238 - L1MA7 LINE L1 -40 6251 5912 8 1447 236 151 78 52 chr9 112992039 112992116 -11084056 + L1M2 LINE L1 5761 5839 -452 8 1447 607 364 85 56 chr9 112992824 112993235 -11082937 - LTR16A1 LTR ERVL -18 438 16 8 1447 605 331 90 107 chr9 112993576 112993923 -11082249 + MLT1H LTR MaLR 58 380 -169 8 1447 304 259 31 10 chr9 112994989 112995066 -11081106 - ID4 SINE ID -66 86 12 8 1447 700 318 10 0 chr9 112995960 112996152 -11080020 - ID_B1 SINE B4 -25 199 6 8 1447 352 309 36 14 chr9 112996550 112996688 -11079484 + B1F SINE Alu 4 144 -5 8 1447 441 0 0 0 chr9 112996714 112996763 -11079409 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 8 1447 275 305 86 2 chr9 112997964 112998146 -11078026 - L1M2 LINE L1 -408 5895 5692 8 1447 2398 58 44 3 chr9 112998180 112998475 -11077697 - L1_Mus1 LINE L1 -1 6566 6260 8 1447 1256 68 0 0 chr9 112998477 112998624 -11077548 - B1_Mus1 SINE Alu -1 147 1 8 1447 549 0 0 0 chr9 112998702 112998763 -11077409 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1447 315 300 0 12 chr9 112998796 112998877 -11077295 - RSINE1 SINE B4 -84 81 2 8 1447 225 0 0 0 chr9 113000687 113000712 -11075460 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1447 723 254 6 9 chr9 113001517 113001708 -11074464 - B3A SINE B2 -30 186 1 2 1447 248 306 46 46 chr9 113001786 113001916 -11074256 + MIRb SINE MIR 1 130 -138 3 1447 638 290 101 73 chr9 113002478 113002846 -11073326 - MTEa LTR MaLR -1 378 1 4 1447 639 242 147 5 chr9 113003789 113003980 -11072192 - ID_B1 SINE B4 -6 218 1 5 1447 2520 68 3 58 chr9 113004716 113005060 -11071112 + ORR1A2 LTR MaLR 3 327 0 6 1447 393 261 33 25 chr9 113005770 113005892 -11070280 - MTEb LTR MaLR -4 375 253 7 1447 891 284 44 0 chr9 113006365 113006590 -11069582 - B4A SINE B4 -1 291 57 8 1447 758 326 91 62 chr9 113006752 113007235 -11068937 + MLT1E3 LTR MaLR 57 556 -68 9 1447 1803 145 167 0 chr9 113007235 113007559 -11068613 - ORR1C1 LTR MaLR 0 378 1 1 1447 758 326 91 62 chr9 113007559 113007627 -11068545 + MLT1E3 LTR MaLR 557 624 0 9 1447 477 34 0 0 chr9 113007947 113008006 -11068166 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1447 351 0 0 0 chr9 113008006 113008045 -11068127 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1447 1074 16 0 0 chr9 113008170 113008294 -11067878 + (TC)n Simple_repeat Simple_repeat 1 124 0 1 1447 312 48 0 0 chr9 113008302 113008344 -11067828 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1447 1062 91 0 0 chr9 113008344 113008479 -11067693 - B1_Mus1 SINE Alu -11 137 3 1 1447 762 223 0 0 chr9 113008573 113008712 -11067460 + B1_Mur3 SINE Alu 5 143 -6 1 1447 402 121 0 0 chr9 113009145 113009211 -11066961 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1447 649 333 68 15 chr9 113010435 113010700 -11065472 + B4A SINE B4 3 281 -11 1 1447 308 94 0 19 chr9 113010705 113010759 -11065413 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1447 22 0 0 0 chr9 113011468 113011490 -11064682 + AT_rich Low_complexity Low_complexity 1 22 0 2 1447 948 270 88 27 chr9 113012271 113012534 -11063638 - B4A SINE B4 -3 289 11 2 1447 301 189 22 0 chr9 113012911 113013001 -11063171 + CT-rich Low_complexity Low_complexity 1 92 0 2 1447 334 190 103 40 chr9 113013393 113013519 -11062653 - Lx8 LINE L1 -2 7471 7338 2 1447 189 0 0 0 chr9 113014093 113014114 -11062058 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1447 279 0 0 0 chr9 113014114 113014144 -11062028 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1447 447 19 0 0 chr9 113014144 113014195 -11061977 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1447 382 329 43 0 chr9 113014357 113014497 -11061675 + RSINE1 SINE B4 3 148 -17 2 1447 513 0 0 0 chr9 113014500 113014557 -11061615 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1447 351 0 0 0 chr9 113014557 113014595 -11061577 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1447 325 289 0 0 chr9 113014675 113014765 -11061407 + L1MA6 LINE L1 5858 5947 -353 3 1447 396 0 0 0 chr9 113016700 113016744 -11059428 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1447 438 352 0 0 chr9 113017410 113017552 -11058620 + GA-rich Low_complexity Low_complexity 1 142 0 3 1447 804 205 0 0 chr9 113017711 113017882 -11058290 + GA-rich Low_complexity Low_complexity 4 174 0 3 1447 534 31 0 0 chr9 113017885 113017949 -11058223 + (GGGAA)n Simple_repeat Simple_repeat 1 64 0 3 1447 1142 88 0 0 chr9 113017970 113018117 -11058055 + B1_Mus2 SINE Alu 1 147 0 3 1447 1375 206 61 6 chr9 113018300 113018613 -11057559 - MTD LTR MaLR 0 419 90 3 1447 393 303 66 87 chr9 113019233 113019519 -11056653 + B4A SINE B4 3 282 -10 3 1447 293 296 0 2 chr9 113019532 113019731 -11056441 + (CA)n Simple_repeat Simple_repeat 1 198 0 3 1447 6631 55 11 0 chr9 113019731 113020530 -11055642 + RLTR13C2 LTR ERVK 1 808 0 3 1447 293 321 0 18 chr9 113020530 113020615 -11055557 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1447 247 318 0 0 chr9 113020795 113020861 -11055311 - tRNA-Ala-GCY_ tRNA tRNA 0 75 10 4 1447 1031 254 141 48 chr9 113020940 113021415 -11054757 + Lx8 LINE L1 6954 7472 -1 4 1447 663 322 215 12 chr9 113022342 113022835 -11053337 + Arthur1 DNA Tip100 94 686 -3261 4 1447 379 260 199 75 chr9 113022838 113023065 -11053107 + B4A SINE B4 4 256 -36 4 1447 1376 101 16 0 chr9 113023065 113023254 -11052918 + B2_Mm2 SINE B2 4 195 0 4 1447 352 341 114 68 chr9 113023254 113023290 -11052882 + B4 SINE B4 245 279 -13 4 1447 462 36 0 0 chr9 113023302 113023358 -11052814 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1447 236 333 74 27 chr9 113023407 113023555 -11052617 + Arthur1 DNA Tip100 840 994 -2953 4 1447 23 78 0 0 chr9 113023599 113023650 -11052522 + AT_rich Low_complexity Low_complexity 1 51 0 4 1447 1687 192 51 27 chr9 113024135 113024509 -11051663 - ORR1C2 LTR MaLR 0 384 2 4 1447 669 58 0 0 chr9 113024516 113024602 -11051570 + (GAA)n Simple_repeat Simple_repeat 1 86 0 4 1447 247 67 67 0 chr9 113024602 113024647 -11051525 + (AGGGGG)n Simple_repeat Simple_repeat 2 49 0 5 1447 685 296 103 14 chr9 113025485 113025708 -11050464 + B4A SINE B4 1 243 -49 5 1447 506 292 82 0 chr9 113025726 113025873 -11050299 + B3 SINE B2 58 216 0 5 1447 237 286 14 0 chr9 113025885 113025955 -11050217 + B4A SINE B4 218 288 -4 5 1447 994 280 35 21 chr9 113026916 113027201 -11048971 - B4A SINE B4 0 292 4 5 1447 22 0 0 0 chr9 113027281 113027303 -11048869 + AT_rich Low_complexity Low_complexity 1 22 0 5 1447 679 324 92 13 chr9 113027427 113027743 -11048429 + MER2 DNA MER2_type 4 344 -1 5 1447 2139 170 29 80 chr9 113028108 113028633 -11047539 + RLTR11A LTR ERVK 19 516 -12 5 1447 253 0 0 51 chr9 113028731 113028770 -11047402 + (TAAAA)n Simple_repeat Simple_repeat 1 37 0 5 1447 389 211 17 20 chr9 113028779 113028877 -11047295 + PB1D10 SINE Alu 2 98 -22 5 1447 234 333 75 19 chr9 113029075 113029182 -11046990 - MER58B DNA MER1_type -2 339 227 5 1447 1290 279 160 41 chr9 113029191 113029321 -11046851 + Lx8 LINE L1 6787 6950 -523 6 1447 489 17 0 0 chr9 113029321 113029379 -11046793 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1447 1290 279 160 41 chr9 113029379 113029861 -11046311 + Lx8 LINE L1 6951 7472 -1 6 1447 1437 74 0 31 chr9 113030333 113030528 -11045644 - B2_Mm2 SINE B2 -6 189 1 6 1447 408 40 0 0 chr9 113030531 113030581 -11045591 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 6 1447 345 100 0 0 chr9 113030735 113030785 -11045387 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 1447 722 308 14 50 chr9 113030995 113031275 -11044897 + B4 SINE B4 9 278 -14 6 1447 543 144 0 0 chr9 113031941 113032038 -11044134 + (TG)n Simple_repeat Simple_repeat 2 98 0 6 1447 353 297 123 76 chr9 113032039 113032316 -11043856 - B4 SINE B4 0 292 3 6 1447 558 0 0 0 chr9 113032390 113032452 -11043720 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1447 257 222 48 0 chr9 113032979 113033042 -11043130 + GA-rich Low_complexity Low_complexity 3 68 0 6 1447 367 246 199 0 chr9 113033561 113033732 -11042440 + Charlie5 DNA MER1_type 2420 2624 0 7 1447 399 286 8 2 chr9 113034035 113034525 -11041647 + (TG)n Simple_repeat Simple_repeat 1 493 0 7 1447 448 347 65 35 chr9 113034576 113034836 -11041336 - B4 SINE B4 -22 270 3 7 1447 463 249 6 6 chr9 113035124 113035294 -11040878 + (TG)n Simple_repeat Simple_repeat 2 171 0 7 1447 254 239 14 14 chr9 113035296 113035368 -11040804 + (TATG)n Simple_repeat Simple_repeat 3 74 0 7 1447 702 175 17 0 chr9 113035368 113035545 -11040627 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1447 214 162 0 0 chr9 113035558 113035595 -11040577 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1447 348 195 91 0 chr9 113035595 113035672 -11040500 - RSINE1 SINE B4 0 165 82 7 1447 195 267 133 0 chr9 113036287 113036384 -11039788 - MIRm SINE MIR -34 234 113 7 1447 467 276 55 12 chr9 113036508 113036673 -11039499 - RMER15 LTR ERVL 0 575 404 7 1447 1120 274 19 46 chr9 113037059 113037234 -11038938 + ORR1E LTR MaLR 3 176 -183 7 1447 360 0 0 0 chr9 113037234 113037274 -11038898 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1447 1120 274 19 46 chr9 113037274 113037465 -11038707 + ORR1E LTR MaLR 177 359 0 7 1447 496 194 37 142 chr9 113038157 113038319 -11037853 + B1_Mur1 SINE Alu 5 149 0 8 1447 460 282 42 98 chr9 113038330 113038500 -11037672 + B3A SINE B2 1 161 -34 8 1447 195 42 0 0 chr9 113038500 113038524 -11037648 + (CATA)n Simple_repeat Simple_repeat 2 25 0 8 1447 332 282 42 98 chr9 113038524 113038546 -11037626 + B2_Mm2 SINE B2 162 182 -13 8 1447 953 276 29 28 chr9 113038939 113039298 -11036874 + MTE2b LTR MaLR 5 379 0 8 1447 24 0 0 0 chr9 113041235 113041259 -11034913 + AT_rich Low_complexity Low_complexity 1 24 0 8 1447 792 125 0 0 chr9 113041284 113041412 -11034760 + (GGAA)n Simple_repeat Simple_repeat 1 128 0 8 1447 305 392 24 0 chr9 113041435 113041601 -11034571 + B3A SINE B2 8 177 -21 8 1447 267 31 0 0 chr9 113041606 113041638 -11034534 + (CATA)n Simple_repeat Simple_repeat 1 32 0 8 1447 717 12 0 0 chr9 113042408 113042490 -11033682 + (TC)n Simple_repeat Simple_repeat 1 82 0 8 1447 818 289 110 3 chr9 113042764 113043118 -11033054 + Lx9 LINE L1 6203 6594 -1050 9 1447 441 36 0 0 chr9 113043154 113043209 -11032963 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1447 645 90 130 69 chr9 113043240 113043371 -11032801 - B2_Mm2 SINE B2 -55 140 2 9 1447 1151 75 0 7 chr9 113043407 113043554 -11032618 + B1_Mus1 SINE Alu 2 147 -1 9 1447 704 269 62 44 chr9 113044333 113044559 -11031613 - B4A SINE B4 -60 232 3 9 1447 21 36 0 0 chr9 113045136 113045164 -11031008 + AT_rich Low_complexity Low_complexity 1 28 0 9 1447 2165 287 126 83 chr9 113045236 113045698 -11030474 + L1M3 LINE L1 3421 3901 -2239 9 1447 464 217 0 0 chr9 113045698 113045790 -11030382 + B1_Mur2 SINE Alu 48 139 -10 9 1447 2165 287 126 83 chr9 113045790 113046260 -11029912 + L1M3 LINE L1 3902 4393 -1747 9 1447 717 216 0 33 chr9 113046260 113046413 -11029759 + B1F2 SINE Alu 2 149 0 9 1447 2165 287 126 83 chr9 113046413 113047262 -11028910 + L1M3 LINE L1 4394 5375 -765 9 1447 257 291 58 0 chr9 113047293 113047397 -11028775 + L1P5 LINE L1 5688 5796 -360 9 1447 238 282 94 0 chr9 113047471 113047556 -11028616 + MLT1A1 LTR MaLR 47 139 -269 1 1447 733 279 54 64 chr9 113047893 113048188 -11027984 + B4A SINE B4 1 292 0 1 1447 238 244 156 13 chr9 113048307 113048461 -11027711 + L1MA9 LINE L1 6014 6189 -123 1 1447 1134 174 199 17 chr9 113048520 113048812 -11027360 - ORR1D1 LTR MaLR -1 373 29 1 1447 1194 138 102 15 chr9 113049700 113049906 -11026266 - URR1A DNA MER1_type 0 226 3 1 1447 1185 64 0 0 chr9 113049987 113050114 -11026058 + (TC)n Simple_repeat Simple_repeat 2 128 0 1 1447 1496 11 0 11 chr9 113050114 113050293 -11025879 + (TCTCCC)n Simple_repeat Simple_repeat 3 179 0 1 1447 1185 64 0 0 chr9 113050293 113050322 -11025850 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 1447 884 170 42 37 chr9 113050462 113050651 -11025521 - B2_Mm2 SINE B2 -4 191 2 1 1447 592 266 24 81 chr9 113050820 113051029 -11025143 + B3A SINE B2 1 197 -1 1 1447 25 75 0 0 chr9 113051974 113052027 -11024145 + AT_rich Low_complexity Low_complexity 1 53 0 1 1447 812 261 5 27 chr9 113052264 113052488 -11023684 - B4 SINE B4 -51 241 23 1 1447 1155 42 0 20 chr9 113052780 113052927 -11023245 + B1_Mm SINE Alu 4 147 0 1 1447 678 58 0 0 chr9 113052931 113053018 -11023154 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 1447 285 29 0 0 chr9 113054676 113054710 -11021462 + (CTG)n Simple_repeat Simple_repeat 1 34 0 1 1447 776 99 48 24 chr9 113054714 113055007 -11021165 + (TG)n Simple_repeat Simple_repeat 1 300 0 1 1447 506 105 44 44 chr9 113055034 113055214 -11020958 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1447 919 285 11 46 chr9 113055248 113055531 -11020641 - B4A SINE B4 -18 274 2 1 1447 254 322 113 62 chr9 113055780 113055805 -11020367 - MLT1D LTR MaLR 0 505 487 1 1447 1128 263 96 58 chr9 113055805 113056168 -11020004 - MTEb LTR MaLR -2 377 1 1 1447 254 322 113 62 chr9 113056168 113056513 -11019659 - MLT1D LTR MaLR -19 486 116 1 1447 416 304 98 17 chr9 113057351 113057570 -11018602 - MIR SINE MIR -17 251 12 1 1447 432 118 0 0 chr9 113057913 113057981 -11018191 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1447 378 0 0 0 chr9 113058857 113058899 -11017273 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1447 721 261 26 86 chr9 113058900 113058963 -11017209 - B4 SINE B4 -22 270 212 1 1447 222 37 0 0 chr9 113058963 113058990 -11017182 + (TTCTG)n Simple_repeat Simple_repeat 4 30 0 1 1447 721 261 26 86 chr9 113058990 113059194 -11016978 - B4 SINE B4 -81 211 19 1 1447 982 263 29 114 chr9 113059201 113059587 -11016585 - ORR1E LTR MaLR -6 353 1 1 1447 639 39 0 0 chr9 113060252 113060330 -11015842 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 1447 281 286 95 0 chr9 113060651 113060777 -11015395 + L2c LINE L2 3249 3386 -1 1 1447 267 54 0 0 chr9 113061491 113061528 -11014644 + (CAGAGA)n Simple_repeat Simple_repeat 5 41 0 1 1447 216 304 89 63 chr9 113061855 113062013 -11014159 + MIRb SINE MIR 39 200 -68 1 1447 261 0 0 0 chr9 113062113 113062142 -11014030 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 1447 1254 256 48 6 chr9 113063252 113063609 -11012563 - MTE2b LTR MaLR -4 375 4 1 1447 246 328 141 45 chr9 113063766 113063964 -11012208 - MLT1D LTR MaLR -258 247 31 1 1447 923 242 134 84 chr9 113064325 113064645 -11011527 - ORR1E LTR MaLR -9 350 15 1 1447 255 317 24 0 chr9 113065479 113065561 -11010611 + Lx8 LINE L1 7107 7190 -283 1 1447 333 326 0 0 chr9 113065603 113065695 -11010477 + RMER15 LTR ERVL 371 462 -113 1 1447 377 70 18 0 chr9 113065700 113065757 -11010415 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1447 23 0 0 0 chr9 113065846 113065869 -11010303 + AT_rich Low_complexity Low_complexity 1 23 0 1 1447 700 260 16 6 chr9 113065924 113066106 -11010066 + B3A SINE B2 2 185 -13 1 1447 215 194 0 0 chr9 113067169 113067205 -11008967 + G-rich Low_complexity Low_complexity 1 36 0 1 1447 1118 230 33 23 chr9 113067293 113067596 -11008576 - MTD LTR MaLR 0 419 114 1 1447 741 136 24 18 chr9 113067968 113068133 -11008039 + (TATG)n Simple_repeat Simple_repeat 4 169 0 1 1447 828 116 40 17 chr9 113068156 113068331 -11007841 + (TATG)n Simple_repeat Simple_repeat 2 180 0 1 1447 599 174 27 0 chr9 113068336 113068485 -11007687 + (TG)n Simple_repeat Simple_repeat 2 154 0 1 1447 875 273 106 4 chr9 113068490 113068744 -11007428 - B4 SINE B4 -4 288 9 1 1447 357 159 0 0 chr9 113068982 113069045 -11007127 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 1 1447 329 188 12 0 chr9 113069054 113069134 -11007038 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1447 270 0 0 0 chr9 113069134 113069164 -11007008 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1447 266 333 8 60 chr9 113069225 113069359 -11006813 - MTD LTR MaLR -249 130 4 1 1447 417 356 55 22 chr9 113069695 113069876 -11006296 - LTR16A1 LTR ERVL -269 187 1 1 1447 369 0 0 0 chr9 113070977 113071018 -11005154 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1447 243 0 0 0 chr9 113071209 113071236 -11004936 + (CAT)n Simple_repeat Simple_repeat 3 29 0 1 1447 230 315 11 22 chr9 113071278 113071369 -11004803 + CT-rich Low_complexity Low_complexity 1 90 0 1 1447 21 57 0 0 chr9 113072242 113072277 -11003895 + AT_rich Low_complexity Low_complexity 1 35 0 1 1447 309 331 50 0 chr9 113073637 113073776 -11002396 - MLT1E LTR MaLR -107 573 428 1 1447 471 311 58 10 chr9 113073792 113074000 -11002172 - MLT1E LTR MaLR -377 276 59 1 1447 472 324 7 0 chr9 113074308 113074456 -11001716 + B1F SINE Alu 1 149 0 1 1447 196 286 91 45 chr9 113074907 113075039 -11001133 + MIRb SINE MIR 108 245 -23 1 1447 647 247 58 26 chr9 113075408 113075599 -11000573 - B3A SINE B2 0 198 2 1 1447 234 150 0 0 chr9 113075733 113075773 -11000399 + (ATG)n Simple_repeat Simple_repeat 2 41 0 1 1447 591 238 21 145 chr9 113075777 113076018 -11000154 + MTE2a LTR MaLR 1 211 -168 1 1447 311 326 36 29 chr9 113076509 113076648 -10999524 - MIR SINE MIR -64 198 59 1 1447 251 299 30 0 chr9 113077132 113077199 -10998973 - ID4_ SINE ID -13 70 2 1 1447 1774 206 129 3 chr9 113077329 113077700 -10998472 - MTD LTR MaLR -1 418 1 1 1447 237 306 39 84 chr9 113077923 113078067 -10998105 + MLT1F1 LTR MaLR 71 207 -348 1 1447 536 320 13 19 chr9 113078382 113078538 -10997634 + B3A SINE B2 28 182 -16 1 1447 216 0 0 0 chr9 113078545 113078569 -10997603 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1447 354 265 36 30 chr9 113078626 113078793 -10997379 + RMER5 LTR ERV1 367 534 0 1 1447 1685 128 27 66 chr9 113080037 113080372 -10995800 + ORR1A4 LTR MaLR 1 322 -7 1 1447 273 271 50 8 chr9 113080615 113080759 -10995413 - L1M5 LINE L1 -2105 4041 3891 1 1447 297 0 0 0 chr9 113080895 113080928 -10995244 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1447 279 302 78 23 chr9 113081394 113081523 -10994649 + LTR16E2 LTR ERVL 433 568 0 1 1447 600 14 0 0 chr9 113081602 113081671 -10994501 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1447 180 0 0 0 chr9 113081671 113081690 -10994482 + (CG)n Simple_repeat Simple_repeat 2 21 0 1 1447 292 341 75 37 chr9 113081861 113081995 -10994177 - B3A SINE B2 0 198 60 1 1447 283 169 12 123 chr9 113082017 113082098 -10994074 - ORSL DNA Tip100 -173 102 31 1 1447 393 238 109 27 chr9 113082847 113082904 -10993268 - MT2A LTR ERVL 0 533 476 1 1447 279 0 0 0 chr9 113082904 113082935 -10993237 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1447 393 238 109 27 chr9 113082935 113083024 -10993148 - MT2A LTR ERVL -58 475 376 1 1447 800 134 24 0 chr9 113083036 113083163 -10993009 + B3 SINE B2 1 130 -86 1 1447 23 0 0 0 chr9 113083209 113083232 -10992940 + AT_rich Low_complexity Low_complexity 1 23 0 1 1447 1490 220 33 0 chr9 113083248 113083584 -10992588 - MT2A LTR ERVL -186 347 1 1 1447 428 173 0 0 chr9 113084154 113084229 -10991943 - MTD LTR MaLR -121 298 224 1 1447 371 324 21 7 chr9 113084309 113084452 -10991720 + B1F1 SINE Alu 3 147 -2 1 1447 438 215 32 0 chr9 113085173 113085266 -10990906 + B4A SINE B4 1 96 -196 1 1447 2442 68 19 3 chr9 113085297 113085622 -10990550 + L1_Mus3 LINE L1 6297 6626 -12 1 1447 591 274 42 60 chr9 113085633 113085850 -10990322 + B4 SINE B4 80 292 0 1 1447 198 0 0 0 chr9 113085850 113085872 -10990300 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1447 219 69 0 0 chr9 113086513 113086542 -10989630 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1447 433 257 5 96 chr9 113087252 113087346 -10988826 + ID_B1 SINE B4 61 143 -81 1 1447 885 242 53 0 chr9 113087346 113087536 -10988636 + B3 SINE B2 3 202 -14 1 1447 433 217 7 143 chr9 113087536 113087615 -10988557 + ID_B1 SINE B4 144 210 -14 1 1447 448 205 13 19 chr9 113087643 113087797 -10988375 + CT-rich Low_complexity Low_complexity 2 154 0 1 1447 1251 34 0 0 chr9 113087797 113087943 -10988229 - B1_Mus2 SINE Alu 0 147 2 1 1447 369 0 0 0 chr9 113087943 113087984 -10988188 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 1 1447 204 62 0 59 chr9 113088051 113088085 -10988087 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1447 196 232 71 0 chr9 113089332 113089388 -10986784 - L2a LINE L2 -34 3392 3333 1 1447 317 281 11 0 chr9 113089391 113089480 -10986692 + B3A SINE B2 2 91 -107 1 1447 193 348 63 26 chr9 113089622 113089811 -10986361 - L2a LINE L2 -181 3245 3050 1 1447 9237 4 1 3 chr9 113090831 113092432 -10983740 - L1Md_A LINE L1 0 6582 4988 1 1447 888 296 10 43 chr9 113092875 113093175 -10982997 - B4 SINE B4 -2 290 1 1 1447 1773 232 13 36 chr9 113094848 113095321 -10980851 + L1_Rod LINE L1 4618 5079 -768 1 1447 456 19 0 0 chr9 113095528 113095581 -10980591 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1447 207 0 0 0 chr9 113096681 113096704 -10979468 + (ACTAG)n Simple_repeat Simple_repeat 3 25 0 1 1447 182 365 35 0 chr9 113097636 113097721 -10978451 + L3 LINE CR1 4144 4231 -258 1 1447 253 218 23 11 chr9 113098813 113098901 -10977271 + CT-rich Low_complexity Low_complexity 6 94 0 1 1447 330 339 30 12 chr9 113099545 113099712 -10976460 - MLT1B LTR MaLR -9 381 212 1 1447 279 203 0 0 chr9 113100899 113100973 -10975199 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1447 284 111 0 18 chr9 113101078 113101133 -10975039 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1447 958 291 43 18 chr9 113101151 113101428 -10974744 - B4 SINE B4 -8 284 1 2 1447 346 247 25 0 chr9 113101857 113101938 -10974234 + MER5A DNA MER1_type 14 96 -93 2 1447 751 270 88 15 chr9 113101956 113102216 -10973956 + ORR1E LTR MaLR 75 353 -6 2 1447 565 285 29 6 chr9 113102222 113102395 -10973777 - B4A SINE B4 -115 177 1 2 1447 244 167 37 0 chr9 113102411 113102465 -10973707 + MER5A DNA MER1_type 134 189 0 2 1447 919 179 19 103 chr9 113102686 113103069 -10973103 - ORR1B2 LTR MaLR -15 352 34 2 1447 525 16 0 0 chr9 113103205 113103267 -10972905 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1447 1212 189 14 0 chr9 113103440 113103662 -10972510 + URR1A DNA MER1_type 1 225 -1 2 1447 312 270 68 0 chr9 113103725 113103799 -10972373 + ID4 SINE ID 1 79 -4 2 1447 536 299 71 104 chr9 113103993 113104132 -10972040 - MLT1E2 LTR MaLR -24 603 459 2 1447 2294 150 26 29 chr9 113104132 113104550 -10971622 - MTC LTR MaLR 0 421 5 2 1447 6025 155 28 151 chr9 113104555 113105989 -10970183 - MTC-int LTR MaLR -1 1257 1 2 1447 2193 197 24 35 chr9 113105989 113106415 -10969757 - MTC LTR MaLR 0 421 1 2 1447 536 299 71 104 chr9 113106415 113106663 -10969509 - MLT1E2 LTR MaLR -169 458 223 2 1447 28 0 0 0 chr9 113106914 113106942 -10969230 + AT_rich Low_complexity Low_complexity 1 28 0 2 1447 749 49 10 0 chr9 113107698 113107800 -10968372 + (TC)n Simple_repeat Simple_repeat 2 104 0 2 1447 583 164 8 8 chr9 113107899 113108028 -10968144 + GA-rich Low_complexity Low_complexity 3 131 0 2 1447 668 225 29 7 chr9 113109787 113109926 -10966246 - B3A SINE B2 -55 143 2 2 1447 990 257 9 0 chr9 113109966 113110180 -10965992 + B3 SINE B2 1 216 0 2 1447 975 82 0 0 chr9 113110377 113110511 -10965661 - B1_Mus1 SINE Alu -1 147 14 2 1447 279 161 0 0 chr9 113111258 113111314 -10964858 + (TTA)n Simple_repeat Simple_repeat 3 58 0 2 1447 1060 277 17 21 chr9 113111534 113111825 -10964347 - B4 SINE B4 -2 290 1 2 1447 610 186 159 12 chr9 113112368 113112531 -10963641 - ORR1D1 LTR MaLR -1 373 187 2 1447 648 231 96 0 chr9 113112993 113113162 -10963010 - ORR1D1 LTR MaLR -180 190 7 2 1447 1293 156 70 5 chr9 113113167 113113459 -10962713 - ORR1D1-int LTR MaLR 0 1509 1094 2 1447 979 152 9 112 chr9 113113426 113113649 -10962523 - ORR1D1-int LTR MaLR -1169 201 2 2 1447 1649 204 24 19 chr9 113113650 113114019 -10962153 - ORR1D1 LTR MaLR 0 374 4 2 1447 244 300 116 8 chr9 113114615 113114736 -10961436 + B4A SINE B4 1 134 -158 2 1447 201 216 59 0 chr9 113114819 113114870 -10961302 + CT-rich Low_complexity Low_complexity 1 54 0 2 1447 626 0 14 0 chr9 113114945 113115019 -10961153 + (GA)n Simple_repeat Simple_repeat 1 75 0 2 180 255 333 0 0 chr9 113115109 113115178 -10960994 + polypurine Low_complexity Low_complexity 3 71 0 2 1448 464 352 79 0 chr9 113115542 113115758 -10960414 - Lx8 LINE L1 -108 7365 7133 2 1448 288 0 0 0 chr9 113116161 113116193 -10959979 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1448 631 297 12 24 chr9 113116206 113116375 -10959797 - B3A SINE B2 -17 181 15 2 1448 352 273 60 10 chr9 113116388 113116488 -10959684 - PB1D10 SINE Alu 0 117 13 2 1448 1009 291 83 11 chr9 113116980 113117352 -10958820 - MLT1A1 LTR MaLR -6 402 4 2 1448 318 267 171 0 chr9 113117649 113117754 -10958418 + B4A SINE B4 36 158 -134 2 1448 1182 55 0 7 chr9 113118107 113118255 -10957917 + B1_Mm SINE Alu 1 147 0 2 1448 342 61 0 0 chr9 113118263 113118312 -10957860 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2 1448 430 274 53 101 chr9 113118540 113118747 -10957425 + B3A SINE B2 1 197 -1 2 1448 528 93 0 0 chr9 113118802 113118877 -10957295 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1448 324 272 81 58 chr9 113118877 113119129 -10957043 + L1ME3B LINE L1 5928 6186 -54 2 1448 217 274 0 0 chr9 113119365 113119416 -10956756 + MIR SINE MIR 61 111 -151 2 1448 470 288 33 6 chr9 113119768 113119957 -10956215 - MTE2b LTR MaLR -219 200 2 2 1448 1482 68 16 5 chr9 113120276 113120468 -10955704 - B2_Mm2 SINE B2 0 195 2 2 1448 648 224 2 0 chr9 113121015 113121600 -10954572 + (TG)n Simple_repeat Simple_repeat 1 585 0 2 1448 533 242 26 7 chr9 113122808 113122962 -10953210 - HAL1-2a_MD LINE L1 -521 2503 2347 2 1448 583 245 7 35 chr9 113123499 113123643 -10952529 + B3 SINE B2 71 210 -6 2 1448 507 33 0 0 chr9 113123796 113123857 -10952315 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1448 899 221 40 15 chr9 113124345 113124413 -10951759 + B3 SINE B2 3 71 -145 2 1448 498 103 0 0 chr9 113124413 113124491 -10951681 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1448 899 221 40 15 chr9 113124491 113124620 -10951552 + B3 SINE B2 72 204 -12 2 1448 245 228 17 34 chr9 113125172 113125231 -10950941 - PB1D7 SINE Alu -59 61 4 2 1448 396 0 0 0 chr9 113125478 113125522 -10950650 + (ATTG)n Simple_repeat Simple_repeat 3 46 0 2 1448 605 294 11 28 chr9 113125663 113125845 -10950327 + B3A SINE B2 3 181 -17 2 1448 306 0 0 0 chr9 113125848 113125882 -10950290 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1448 887 90 7 0 chr9 113125882 113126025 -10950147 + (GA)n Simple_repeat Simple_repeat 2 146 0 2 1448 1755 202 56 13 chr9 113126289 113126681 -10949491 + MTD LTR MaLR 3 411 -8 2 1448 842 68 0 8 chr9 113127494 113127613 -10948559 + (GA)n Simple_repeat Simple_repeat 2 119 0 2 1448 334 304 9 0 chr9 113127614 113127729 -10948443 + (CA)n Simple_repeat Simple_repeat 1 116 0 2 1448 234 136 0 0 chr9 113127736 113127780 -10948392 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1448 408 236 0 0 chr9 113127781 113127938 -10948234 + (CA)n Simple_repeat Simple_repeat 1 157 0 2 1448 576 123 0 0 chr9 113128343 113128457 -10947715 + (GA)n Simple_repeat Simple_repeat 2 115 0 2 1448 415 286 58 36 chr9 113128615 113128753 -10947419 + B1F SINE Alu 4 144 -5 2 1448 779 280 65 17 chr9 113129481 113129775 -10946397 - RMER15 LTR ERVL -2 573 266 2 1448 249 253 40 50 chr9 113129763 113129863 -10946309 - RMER15 LTR ERVL -416 159 61 2 1448 1066 218 19 0 chr9 113131321 113131527 -10944645 - B3 SINE B2 -5 211 2 2 1448 788 280 42 78 chr9 113131531 113131938 -10944234 + MTE2a LTR MaLR 17 419 0 2 1448 1128 237 150 41 chr9 113132340 113132753 -10943419 + Lx8 LINE L1 6873 7351 -122 2 1448 447 101 0 0 chr9 113132753 113132832 -10943340 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 2 1448 1128 237 150 41 chr9 113132832 113132959 -10943213 + Lx8 LINE L1 7352 7471 -2 2 1448 235 171 28 73 chr9 113133612 113133724 -10942448 + T-rich Low_complexity Low_complexity 1 106 0 2 1448 1117 256 93 19 chr9 113133761 113134069 -10942103 + MTD LTR MaLR 1 334 -85 2 1448 2013 161 31 11 chr9 113134069 113134426 -10941746 - ORR1B2 LTR MaLR 0 367 4 2 1448 1117 256 93 19 chr9 113134426 113134492 -10941680 + MTD LTR MaLR 335 403 -16 2 1448 363 286 124 16 chr9 113135134 113135319 -10940853 + RMER5 LTR ERV1 32 236 -298 2 1448 2714 28 28 0 chr9 113135338 113135656 -10940516 - IAPLTR2b LTR ERVK 0 327 1 2 1448 6439 65 11 10 chr9 113135656 113136484 -10939688 - IAPEz-int LTR ERVK 0 6481 5653 2 1448 2685 79 0 3 chr9 113136479 113136822 -10939350 - IAPEz-int LTR ERVK -4781 1700 1359 2 1448 3501 84 21 12 chr9 113136822 113137543 -10938629 - IAPEz-int LTR ERVK -5819 662 9 2 1448 2721 19 35 0 chr9 113137544 113137860 -10938312 - IAPLTR2b LTR ERVK 0 327 1 2 1448 1940 47 13 4 chr9 113137860 113138096 -10938076 - L1_Mus1 LINE L1 -235 6332 6095 2 1448 1063 52 0 0 chr9 113138096 113138231 -10937941 + L1_Mus1 LINE L1 6433 6567 0 2 1448 738 279 82 19 chr9 113138231 113138501 -10937671 + RMER5 LTR ERV1 223 509 -25 2 1448 327 136 72 43 chr9 113138789 113138858 -10937314 - HAL1-3A_ME LINE L1 -812 2046 1976 2 1448 622 205 9 0 chr9 113138858 113139221 -10936951 + (TG)n Simple_repeat Simple_repeat 1 366 0 2 1448 297 51 0 0 chr9 113139232 113139271 -10936901 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1448 243 61 0 0 chr9 113139273 113139306 -10936866 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 2 1448 362 266 22 66 chr9 113139324 113139461 -10936711 - RSINE1 SINE B4 -33 132 2 2 1448 605 207 101 53 chr9 113139734 113139923 -10936249 - B3A SINE B2 0 198 1 2 1448 828 151 29 0 chr9 113140158 113140330 -10935842 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 2 1448 737 247 16 41 chr9 113140356 113140550 -10935622 + B3A SINE B2 3 191 -7 2 1448 22 35 0 0 chr9 113140831 113140860 -10935312 + AT_rich Low_complexity Low_complexity 1 29 0 2 1448 23 68 0 0 chr9 113140968 113141012 -10935160 + AT_rich Low_complexity Low_complexity 1 44 0 2 1448 189 0 0 0 chr9 113141165 113141186 -10934986 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2 1448 332 200 173 81 chr9 113141226 113141411 -10934761 - RMER5 LTR ERV1 -5 529 328 2 1448 608 271 48 19 chr9 113141416 113141623 -10934549 + B3 SINE B2 4 216 0 2 1448 730 158 189 11 chr9 113141817 113142002 -10934170 - MTD LTR MaLR -96 323 106 2 1448 717 12 0 0 chr9 113142188 113142270 -10933902 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 1448 247 225 0 27 chr9 113142314 113142387 -10933785 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 2 1448 24 77 0 0 chr9 113142467 113142519 -10933653 + AT_rich Low_complexity Low_complexity 1 52 0 2 1448 271 270 180 0 chr9 113142623 113142734 -10933438 - Lx8 LINE L1 -149 7324 7194 2 1448 308 225 101 0 chr9 113142729 113142818 -10933354 - L1MA7 LINE L1 -8 6283 6186 2 1448 23 0 0 0 chr9 113142897 113142920 -10933252 + AT_rich Low_complexity Low_complexity 1 23 0 2 1448 314 293 20 0 chr9 113143246 113143345 -10932827 + MER94 DNA AcHobo 34 134 0 2 1448 24490 83 41 3 chr9 113144020 113148907 -10927265 + L1Md_F3 LINE L1 462 5586 -297 2 1448 8453 38 4 3 chr9 113148908 113149903 -10926269 + L1Md_F3 LINE L1 5588 6583 -1 2 1448 1227 233 119 11 chr9 113150236 113150614 -10925558 + MTD LTR MaLR 1 419 0 2 1448 1941 150 83 0 chr9 113151035 113151374 -10924798 - ORR1B2 LTR MaLR 0 367 1 2 1448 277 316 32 45 chr9 113152391 113152547 -10923625 - RMER15 LTR ERVL -42 533 380 2 1448 1106 242 35 80 chr9 113153136 113153227 -10922945 + ORR1D2 LTR MaLR 11 95 -275 2 1448 2195 159 59 5 chr9 113153227 113153601 -10922571 + ORR1B1 LTR MaLR 1 394 0 2 1448 1106 242 35 80 chr9 113153601 113153886 -10922286 + ORR1D2 LTR MaLR 96 370 0 2 1448 245 279 15 0 chr9 113153898 113153966 -10922206 + Tigger5 DNA MER2_type 2330 2398 -8 2 1448 257 75 25 0 chr9 113154967 113155007 -10921165 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1448 759 247 0 0 chr9 113155283 113155651 -10920521 + (TG)n Simple_repeat Simple_repeat 1 368 0 2 1448 342 322 78 53 chr9 113155708 113155916 -10920256 + L1ME3 LINE L1 1348 1519 -744 2 1448 201 39 0 0 chr9 113155916 113155942 -10920230 + (TTATA)n Simple_repeat Simple_repeat 5 30 0 2 1448 253 322 78 53 chr9 113155942 113155976 -10920196 + L1ME3 LINE L1 1825 1866 -4630 2 1448 21 0 0 0 chr9 113156506 113156527 -10919645 + AT_rich Low_complexity Low_complexity 1 21 0 2 1448 540 204 98 8 chr9 113156533 113156666 -10919506 + B1_Mur1 SINE Alu 3 147 -2 2 1448 182 136 111 22 chr9 113156892 113156937 -10919235 + L3 LINE CR1 96 144 -4345 2 1448 835 336 58 18 chr9 113157221 113157709 -10918463 + L1ME3 LINE L1 5767 6277 -139 2 1448 184 300 0 48 chr9 113158285 113158348 -10917824 + L2c LINE L2 3081 3140 -247 3 1448 843 287 59 18 chr9 113158559 113158832 -10917340 - B4A SINE B4 -8 284 1 3 1448 2228 321 55 94 chr9 113158907 113160049 -10916123 + Lx8 LINE L1 6404 7643 -1 3 1448 462 294 139 5 chr9 113160063 113160265 -10915907 + Lx8 LINE L1 7239 7467 -6 3 1448 550 289 69 0 chr9 113161147 113161320 -10914852 + ID_B1 SINE B4 13 197 -27 3 1448 516 16 0 0 chr9 113162370 113162431 -10913741 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1448 486 0 0 0 chr9 113162431 113162484 -10913688 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1448 267 270 135 0 chr9 113162538 113162612 -10913560 - B4A SINE B4 -77 215 132 3 1448 607 129 33 0 chr9 113162618 113162737 -10913435 - RMER19A LTR ERVK 0 737 631 3 1448 28 0 0 0 chr9 113162926 113162954 -10913218 + AT_rich Low_complexity Low_complexity 1 28 0 3 1448 1014 251 75 67 chr9 113163573 113163949 -10912223 - MTE2a LTR MaLR 0 379 1 3 1448 1172 289 25 23 chr9 113164366 113164720 -10911452 - ORR1E LTR MaLR 0 359 5 3 1448 295 242 75 0 chr9 113165101 113165181 -10910991 + MIRb SINE MIR 112 194 -68 3 1448 531 300 52 56 chr9 113165182 113165433 -10910739 + MLT1N2 LTR MaLR 311 560 -2 3 1448 329 274 140 25 chr9 113166207 113166364 -10909808 + B4A SINE B4 118 292 0 3 1448 431 215 8 0 chr9 113166364 113166485 -10909687 + (CA)n Simple_repeat Simple_repeat 1 122 0 3 1448 333 60 20 0 chr9 113166486 113166536 -10909636 + HAL1-3A_ME LINE L1 1976 2026 -832 3 1448 1060 288 55 74 chr9 113167180 113167668 -10908504 + MER67D LTR ERV1 29 507 -7 3 1448 983 167 111 43 chr9 113168033 113168220 -10907952 + URR1B DNA MER1_type 5 210 -15 3 1448 2052 229 50 66 chr9 113168220 113168841 -10907331 - RMER19C LTR ERVK 0 611 1 3 1448 983 167 111 43 chr9 113168841 113168860 -10907312 + URR1B DNA MER1_type 211 225 0 3 1448 267 259 32 146 chr9 113168954 113169112 -10907060 + MT2A LTR ERVL 2 141 -392 3 1448 1485 258 74 8 chr9 113168975 113169338 -10906834 + MTD LTR MaLR 31 417 -2 3 1448 313 329 35 22 chr9 113169463 113169690 -10906482 + L1M5 LINE L1 5542 5771 -402 3 1448 407 182 31 16 chr9 113169708 113169815 -10906357 + GA-rich Low_complexity Low_complexity 2 110 0 3 1448 498 17 0 0 chr9 113169815 113169874 -10906298 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 3 1448 407 182 31 16 chr9 113169874 113169894 -10906278 + polypurine Low_complexity Low_complexity 111 130 0 3 1448 441 0 0 0 chr9 113170189 113170238 -10905934 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1448 351 290 85 40 chr9 113170364 113170540 -10905632 + MER5A DNA MER1_type 5 188 -1 3 1448 495 0 0 0 chr9 113170568 113170623 -10905549 + (CCCTAA)n Simple_repeat Simple_repeat 1 55 0 3 1448 405 0 0 0 chr9 113170702 113170747 -10905425 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1448 557 310 40 5 chr9 113171573 113171774 -10904398 + ID_B1 SINE B4 5 212 -12 3 1448 310 308 110 81 chr9 113172038 113172211 -10903961 + B4 SINE B4 38 215 -77 3 1448 261 119 0 0 chr9 113172279 113172321 -10903851 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1448 369 95 0 0 chr9 113173305 113173368 -10902804 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1448 531 45 0 0 chr9 113173368 113173434 -10902738 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1448 632 286 102 6 chr9 113173453 113173629 -10902543 - B4 SINE B4 -95 197 5 3 1448 189 0 0 0 chr9 113174166 113174187 -10901985 + (CACCT)n Simple_repeat Simple_repeat 2 22 0 3 1448 355 377 72 57 chr9 113174797 113175146 -10901026 + LTR16A1 LTR ERVL 8 361 -95 3 1448 793 284 93 41 chr9 113176237 113176602 -10899570 + MTE2a LTR MaLR 30 405 -14 3 1448 534 31 0 0 chr9 113176770 113176834 -10899338 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1448 717 278 0 165 chr9 113178079 113178351 -10897821 + B4 SINE B4 29 255 -37 3 1448 590 170 0 20 chr9 113178375 113178477 -10897695 + B1_Mus2 SINE Alu 48 147 0 3 1448 202 250 162 88 chr9 113179619 113179755 -10896417 + L3 LINE CR1 4259 4404 -85 3 1448 994 271 10 96 chr9 113179988 113180080 -10896092 + B4 SINE B4 1 91 -201 3 1448 938 143 0 33 chr9 113180080 113180200 -10895972 + B1_Mus1 SINE Alu 1 120 -28 3 1448 311 0 0 25 chr9 113180200 113180240 -10895932 + (TAA)n Simple_repeat Simple_repeat 3 41 0 3 1448 938 143 0 33 chr9 113180240 113180271 -10895901 + B1_Mus1 SINE Alu 121 147 -1 3 1448 994 271 10 96 chr9 113180271 113180492 -10895680 + B4 SINE B4 92 287 -5 3 1448 202 184 20 20 chr9 113180499 113180549 -10895623 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1448 190 81 54 0 chr9 113180569 113180606 -10895566 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 3 1448 296 321 88 58 chr9 113180651 113181006 -10895166 + MLT1H LTR MaLR 120 534 -15 3 1448 21 0 0 0 chr9 113181575 113181596 -10894576 + AT_rich Low_complexity Low_complexity 1 21 0 3 1448 183 42 0 0 chr9 113181663 113181687 -10894485 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1448 1037 157 45 0 chr9 113181795 113181973 -10894199 + URR1A DNA MER1_type 1 186 -40 3 1448 840 301 49 103 chr9 113181983 113182350 -10893822 - MTEa LTR MaLR -32 347 1 3 1448 960 93 0 0 chr9 113182663 113182813 -10893359 + (GA)n Simple_repeat Simple_repeat 1 150 0 3 1448 636 244 66 35 chr9 113183364 113183623 -10892549 - L1MA6 LINE L1 -95 6205 5939 3 1448 798 257 103 4 chr9 113183649 113183911 -10892261 - Lx8 LINE L1 -5 7468 7181 3 1448 499 289 78 60 chr9 113184085 113184354 -10891818 - B4 SINE B4 -18 274 1 3 1448 1011 232 89 12 chr9 113184444 113184848 -10891324 - L1MA6 LINE L1 -455 5716 5273 3 1448 1019 339 58 0 chr9 113185114 113185462 -10890710 + MTE2b LTR MaLR 8 375 -4 3 1448 2017 137 10 93 chr9 113185934 113186320 -10889852 - ORR1B1 LTR MaLR 0 394 41 3 1448 896 200 107 5 chr9 113186780 113186976 -10889196 + B3 SINE B2 1 216 0 3 1448 23 0 0 0 chr9 113186976 113186999 -10889173 + AT_rich Low_complexity Low_complexity 1 23 0 3 1448 382 260 20 30 chr9 113187118 113187236 -10888936 + PB1D10 SINE Alu 1 117 -10 3 1448 239 136 45 119 chr9 113187327 113187394 -10888778 + L2c LINE L2 3296 3357 -30 3 1448 975 128 0 0 chr9 113187399 113187563 -10888609 + (TGAA)n Simple_repeat Simple_repeat 2 165 0 3 1448 780 123 0 48 chr9 113187862 113188050 -10888122 + (CATA)n Simple_repeat Simple_repeat 2 180 0 3 1448 504 200 19 0 chr9 113188056 113188216 -10887956 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 1448 383 156 0 0 chr9 113188216 113188280 -10887892 + HAL1-3A_ME LINE L1 1975 2038 -820 3 1448 416 285 170 72 chr9 113189195 113189460 -10886712 + B4A SINE B4 1 291 -1 3 1448 9407 116 129 0 chr9 113189613 113192172 -10884000 - L1_Mus1 LINE L1 0 6567 3611 3 1448 1208 49 0 0 chr9 113192968 113193112 -10883060 + B1_Mus1 SINE Alu 2 145 -3 3 1448 825 107 0 0 chr9 113193112 113193234 -10882938 + (GAAA)n Simple_repeat Simple_repeat 2 123 0 3 1448 313 252 26 61 chr9 113193664 113193778 -10882394 - L1MA10 LINE L1 -11 6323 6214 3 1448 850 232 170 48 chr9 113193778 113193938 -10882234 - ORR1D2 LTR MaLR 0 370 203 3 1448 396 0 0 0 chr9 113193938 113193982 -10882190 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3 1448 850 232 170 48 chr9 113193982 113194151 -10882021 - ORR1D2 LTR MaLR -168 202 3 3 1448 240 239 14 56 chr9 113194222 113194293 -10881879 - L1MB1 LINE L1 -93 6096 6029 3 1448 235 234 0 132 chr9 113195663 113195830 -10880342 + CT-rich Low_complexity Low_complexity 2 146 0 3 1448 369 0 0 0 chr9 113196503 113196544 -10879628 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1448 1476 34 0 0 chr9 113197363 113197541 -10878631 + (TGG)n Simple_repeat Simple_repeat 3 180 0 3 1448 448 234 124 28 chr9 113198033 113198178 -10877994 - RSINE1 SINE B4 -5 160 2 3 1448 294 115 0 0 chr9 113198648 113198700 -10877472 + (TAGG)n Simple_repeat Simple_repeat 1 52 0 3 1448 402 21 0 0 chr9 113198701 113198748 -10877424 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1448 1253 124 119 0 chr9 113198981 113199183 -10876989 - URR1A DNA MER1_type 0 226 1 3 1448 552 84 0 0 chr9 113199524 113199607 -10876565 + (GA)n Simple_repeat Simple_repeat 1 83 0 3 1448 469 319 6 24 chr9 113199999 113200166 -10876006 - MER117 DNA MER1_type -33 164 1 3 1448 234 292 115 0 chr9 113200995 113201091 -10875081 + MLT1J2 LTR MaLR 9 115 -333 3 1448 1287 198 34 129 chr9 113201097 113201509 -10874663 - MTE2a LTR MaLR -6 373 1 3 1448 895 290 18 54 chr9 113203535 113203812 -10872360 + B4A SINE B4 2 268 -24 3 1448 591 53 0 0 chr9 113203815 113203890 -10872282 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1448 930 264 94 34 chr9 113204417 113204683 -10871489 + B4A SINE B4 11 292 0 3 1448 340 280 167 68 chr9 113205115 113205337 -10870835 + ORR1E LTR MaLR 97 340 -19 3 1448 275 347 54 43 chr9 113205361 113205545 -10870627 - LTR16A1 LTR ERVL -246 210 25 3 1448 522 245 79 0 chr9 113206272 113206411 -10869761 - RSINE1 SINE B4 -14 151 2 3 1448 501 17 0 0 chr9 113206806 113206864 -10869308 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1448 334 297 19 19 chr9 113207152 113207310 -10868862 + (TATATG)n Simple_repeat Simple_repeat 6 163 0 3 1448 231 274 60 50 chr9 113207311 113207411 -10868761 + RMER12 LTR ERVK 735 835 -487 3 1448 355 331 0 17 chr9 113207466 113207647 -10868525 + (TATG)n Simple_repeat Simple_repeat 2 179 0 3 1448 286 330 0 0 chr9 113207683 113207795 -10868377 + (CATA)n Simple_repeat Simple_repeat 4 115 0 3 1448 202 256 24 49 chr9 113209341 113209423 -10866749 + GA-rich Low_complexity Low_complexity 1 80 0 3 1448 941 126 17 6 chr9 113209423 113209599 -10866573 + (GGGA)n Simple_repeat Simple_repeat 2 179 0 3 1448 248 264 11 0 chr9 113209606 113209693 -10866479 + GA-rich Low_complexity Low_complexity 3 90 0 3 1448 485 344 12 6 chr9 113209732 113209896 -10866276 + GA-rich Low_complexity Low_complexity 1 165 0 3 1448 235 260 12 151 chr9 113211384 113211470 -10864702 + RSINE1 SINE B4 92 165 0 3 1448 216 214 0 0 chr9 113211508 113211564 -10864608 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1448 486 0 0 0 chr9 113212496 113212550 -10863622 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1448 468 0 0 0 chr9 113212805 113212857 -10863315 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1448 780 278 17 88 chr9 113212873 113213169 -10863003 - B4 SINE B4 -15 277 3 4 1448 1562 226 99 3 chr9 113213683 113214047 -10862125 - MTD LTR MaLR -20 399 1 4 1448 220 318 11 45 chr9 113214082 113214171 -10862001 - MIRc SINE MIR -111 157 72 4 1448 183 80 0 0 chr9 113214572 113214597 -10861575 + (TCTCC)n Simple_repeat Simple_repeat 2 26 0 4 1448 319 353 70 11 chr9 113215823 113216009 -10860163 - LTR16A1 LTR ERVL -92 364 168 4 1448 295 248 28 37 chr9 113216486 113216595 -10859577 + L1MA8 LINE L1 6169 6276 -15 4 1448 593 273 0 61 chr9 113217078 113217226 -10858946 - ID_B1 SINE B4 -19 205 67 4 1448 204 182 0 0 chr9 113217332 113217376 -10858796 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1448 253 268 14 27 chr9 113217765 113217838 -10858334 + MLT1J2 LTR MaLR 343 414 -34 4 1448 180 328 68 60 chr9 113218077 113218210 -10857962 - L2a LINE L2 -4 3422 3289 4 1448 419 301 121 31 chr9 113218254 113218477 -10857695 - MIRb SINE MIR -18 250 8 4 1448 501 204 0 0 chr9 113219241 113219383 -10856789 + (TG)n Simple_repeat Simple_repeat 2 143 0 4 1448 493 299 6 6 chr9 113219404 113219582 -10856590 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1448 820 317 15 18 chr9 113219684 113219989 -10856183 - B4 SINE B4 0 292 1 4 1448 360 307 103 12 chr9 113220643 113220808 -10855364 - MER5A DNA MER1_type 0 189 10 4 1448 240 307 40 0 chr9 113220840 113220915 -10855257 - MER5A DNA MER1_type -111 78 1 4 1448 588 284 52 16 chr9 113221476 113221669 -10854503 + MTEa LTR MaLR 15 214 -165 4 1448 546 111 54 20 chr9 113221669 113221816 -10854356 + CT-rich Low_complexity Low_complexity 3 154 0 4 1448 817 204 17 6 chr9 113221818 113221995 -10854177 + MTEa LTR MaLR 201 379 0 4 1448 300 308 27 27 chr9 113222819 113222929 -10853243 + L1M5 LINE L1 5603 5712 -412 4 1448 754 312 14 20 chr9 113223425 113223719 -10852453 - B4A SINE B4 0 292 1 4 1448 789 128 7 13 chr9 113224258 113224408 -10851764 + (GGGA)n Simple_repeat Simple_repeat 4 152 0 4 1448 622 282 95 9 chr9 113224935 113225157 -10851015 - MTD LTR MaLR -173 246 6 4 1448 1480 290 68 11 chr9 113225532 113226003 -10850169 - Tigger1 DNA MER2_type -1 2417 1920 4 1448 2418 133 5 58 chr9 113226093 113226509 -10849663 + ORR1B1 LTR MaLR 1 394 0 4 1448 2015 152 20 9 chr9 113226514 113226860 -10849312 - MTB_Mm LTR MaLR 0 407 58 4 1448 3723 204 50 67 chr9 113226857 113227079 -10849093 - ORR1B1-int LTR MaLR -8 1090 893 4 1448 261 0 0 0 chr9 113227079 113227108 -10849064 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 4 1448 3723 204 50 67 chr9 113227108 113227993 -10848179 - ORR1B1-int LTR MaLR -206 892 2 4 1448 1832 152 86 11 chr9 113227999 113228358 -10847814 - ORR1B1 LTR MaLR -8 386 1 4 1448 3447 269 137 36 chr9 113228380 113228754 -10847418 - Tigger1 DNA MER2_type -632 1786 1340 4 1448 998 268 10 14 chr9 113228754 113229042 -10847130 + B4 SINE B4 2 288 -4 4 1448 3447 269 137 36 chr9 113229042 113230183 -10845989 - Tigger1 DNA MER2_type -1079 1339 119 4 1448 385 264 72 39 chr9 113230275 113230482 -10845690 + L1MA6 LINE L1 6068 6300 0 4 1448 632 242 19 32 chr9 113230505 113230585 -10845587 + ID SINE ID 3 80 -144 4 1448 213 385 114 9 chr9 113230585 113230690 -10845482 + 7SLRNA srpRNA srpRNA 3 118 -196 4 1448 648 145 0 0 chr9 113231226 113231357 -10844815 + (TTGG)n Simple_repeat Simple_repeat 4 134 0 4 1448 207 0 0 0 chr9 113231361 113231384 -10844788 + (TGGA)n Simple_repeat Simple_repeat 4 26 0 4 1448 251 28 28 0 chr9 113231388 113231424 -10844748 + (CTTG)n Simple_repeat Simple_repeat 4 40 0 4 1448 306 306 0 0 chr9 113231431 113231516 -10844656 + (TTGG)n Simple_repeat Simple_repeat 3 87 0 4 1448 25 51 0 0 chr9 113233572 113233611 -10842561 + AT_rich Low_complexity Low_complexity 1 39 0 4 1448 234 0 0 0 chr9 113233671 113233697 -10842475 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1448 612 319 58 0 chr9 113234555 113234743 -10841429 - B4A SINE B4 0 292 94 4 1448 663 241 297 14 chr9 113234743 113235029 -10841143 - ORR1D2 LTR MaLR -3 367 1 4 1448 234 0 0 0 chr9 113235047 113235073 -10841099 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 1448 1194 56 0 0 chr9 113235077 113235219 -10840953 - B1_Mus2 SINE Alu -5 142 1 4 1448 408 40 0 0 chr9 113235641 113235691 -10840481 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 4 1448 812 243 0 11 chr9 113235691 113235878 -10840294 - B3 SINE B2 -11 205 21 4 1448 369 315 139 51 chr9 113235897 113236129 -10840043 - Lx8 LINE L1 0 7473 7248 4 1448 1430 162 101 68 chr9 113236129 113236327 -10839845 + RMER17C LTR ERVK 1 223 -187 4 1448 330 26 0 0 chr9 113236327 113236366 -10839806 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1448 1430 162 101 68 chr9 113236366 113236564 -10839608 + RMER17C LTR ERVK 224 410 0 4 1448 369 315 139 51 chr9 113236564 113236605 -10839567 - Lx8 LINE L1 -226 7247 7177 4 1448 557 301 79 8 chr9 113236630 113236846 -10839326 - B3A SINE B2 -4 212 1 4 1448 216 0 0 0 chr9 113236974 113236998 -10839174 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1448 1010 242 19 5 chr9 113237677 113237889 -10838283 + ID_B1 SINE B4 1 215 -9 4 1448 203 180 39 39 chr9 113237898 113238002 -10838170 + GA-rich Low_complexity Low_complexity 2 105 0 4 1448 702 229 0 0 chr9 113238052 113238192 -10837980 - B1_Mur2 SINE Alu -5 144 5 4 1448 819 218 0 7 chr9 113238731 113238879 -10837293 + B1_Mur4 SINE Alu 3 149 -1 4 1448 704 234 130 0 chr9 113238962 113239146 -10837026 + B3 SINE B2 4 211 -5 4 1448 1399 92 0 5 chr9 113239460 113239646 -10836526 + B2_Mm2 SINE B2 1 185 -10 4 1448 719 216 88 62 chr9 113239888 113240081 -10836091 - B3A SINE B2 0 198 1 4 1448 387 290 30 84 chr9 113240658 113240861 -10835311 + B3A SINE B2 5 196 -2 4 1448 432 37 0 0 chr9 113241243 113241297 -10834875 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1448 26 77 0 13 chr9 113241298 113241331 -10834841 + AT_rich Low_complexity Low_complexity 1 33 0 4 1448 1090 179 14 9 chr9 113241331 113241545 -10834627 + B3 SINE B2 2 216 0 4 1448 26 77 0 13 chr9 113241545 113241590 -10834582 + AT_rich Low_complexity Low_complexity 1 45 0 4 1448 824 114 76 0 chr9 113242558 113242690 -10833482 + B1_Mus1 SINE Alu 1 142 -6 4 1448 219 65 0 0 chr9 113242690 113242712 -10833460 + (GA)n Simple_repeat Simple_repeat 1 22 0 4 1448 1091 124 6 0 chr9 113242712 113242889 -10833283 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 4 1448 219 65 0 0 chr9 113242889 113242897 -10833275 + (GA)n Simple_repeat Simple_repeat 1 8 0 4 1448 912 289 46 0 chr9 113243025 113243285 -10832887 + B4A SINE B4 5 276 -16 4 1448 276 30 0 0 chr9 113243285 113243318 -10832854 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1448 333 0 0 0 chr9 113243318 113243354 -10832818 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1448 329 241 71 12 chr9 113243635 113243719 -10832453 - PB1 SINE Alu -10 117 29 4 1448 233 315 62 62 chr9 113243836 113244029 -10832143 - MIRb SINE MIR -32 236 44 4 1448 765 242 112 148 chr9 113244805 113245197 -10830975 - MTE2a LTR MaLR -1 378 1 4 1448 407 282 111 42 chr9 113245479 113245668 -10830504 + LTR16C LTR ERVL 189 390 -99 4 1448 425 260 10 0 chr9 113245813 113245917 -10830255 - PB1D10 SINE Alu -8 109 5 4 1449 342 242 24 0 chr9 113246757 113246881 -10829291 + GA-rich Low_complexity Low_complexity 3 129 0 4 1449 1164 78 0 27 chr9 113246887 113247072 -10829100 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1449 222 37 0 0 chr9 113247329 113247356 -10828816 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1449 22 0 0 0 chr9 113247459 113247481 -10828691 + AT_rich Low_complexity Low_complexity 1 22 0 4 1449 3926 80 8 2 chr9 113247481 113248006 -10828166 - L1_Mus3 LINE L1 -3 6635 6108 4 1449 247 35 0 0 chr9 113248006 113248035 -10828137 + L1_Mm LINE L1 4802 4830 -1053 4 1449 1036 242 188 30 chr9 113248057 113248483 -10827689 - Lx8 LINE L1 -2 7471 6979 4 1449 496 278 13 21 chr9 113248736 113248923 -10827249 - Lx8 LINE L1 -370 5930 5758 4 1449 817 281 62 11 chr9 113249038 113249312 -10826860 + MTD LTR MaLR 13 300 -119 4 1449 526 241 86 40 chr9 113249590 113249741 -10826431 - RSINE1 SINE B4 -4 161 4 4 1449 395 340 140 37 chr9 113249741 113250147 -10826025 - L2a LINE L2 -1 3425 2978 4 1449 185 163 0 44 chr9 113251033 113251078 -10825094 + (CAGA)n Simple_repeat Simple_repeat 3 45 0 4 1449 279 0 0 0 chr9 113251508 113251539 -10824633 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1449 225 0 0 0 chr9 113251539 113251563 -10824609 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1449 200 133 44 0 chr9 113252371 113252416 -10823756 + (CATA)n Simple_repeat Simple_repeat 2 48 0 4 1449 1583 230 29 13 chr9 113252652 113253035 -10823137 - MTD LTR MaLR -19 400 12 4 1449 410 311 36 46 chr9 113253070 113253359 -10822813 - ORR1E LTR MaLR -29 341 55 4 1449 778 206 28 87 chr9 113254285 113254503 -10821669 + B3 SINE B2 1 205 -11 4 1449 396 0 0 0 chr9 113254503 113254547 -10821625 + (CATA)n Simple_repeat Simple_repeat 4 47 0 4 1449 520 185 0 2 chr9 113255157 113255272 -10820900 + B2_Mm2 SINE B2 3 115 -101 4 1449 230 239 0 56 chr9 113255424 113255495 -10820677 + MLT1G LTR MaLR 440 506 -85 4 1449 396 0 0 0 chr9 113256638 113256682 -10819490 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1449 378 0 0 0 chr9 113256682 113256723 -10819449 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1449 218 229 86 0 chr9 113256920 113256990 -10819182 + MIRb SINE MIR 105 180 -88 4 1449 25 31 0 0 chr9 113258027 113258059 -10818113 + AT_rich Low_complexity Low_complexity 1 32 0 4 1449 265 354 12 42 chr9 113258375 113258543 -10817629 + LTR85a LTR Gypsy? 69 231 -471 4 1449 493 267 0 58 chr9 113258567 113258706 -10817466 + B1F2 SINE Alu 7 137 -12 4 1449 804 302 18 43 chr9 113258713 113258910 -10817262 + B4A SINE B4 10 210 -82 4 1449 796 246 10 25 chr9 113258910 113259077 -10817095 + B3A SINE B2 1 166 -32 5 1449 369 0 0 0 chr9 113259077 113259118 -10817054 + (CATA)n Simple_repeat Simple_repeat 2 42 0 5 1449 796 246 10 25 chr9 113259118 113259146 -10817026 + B3A SINE B2 167 193 -5 5 1449 804 302 18 43 chr9 113259146 113259228 -10816944 + B4A SINE B4 211 282 -10 4 1449 194 98 0 47 chr9 113259251 113259294 -10816878 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 5 1449 676 256 161 35 chr9 113260277 113260532 -10815640 - B4 SINE B4 -5 287 1 5 1449 219 283 0 0 chr9 113261593 113261653 -10814519 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1449 417 247 0 0 chr9 113261665 113261815 -10814357 + (TG)n Simple_repeat Simple_repeat 1 150 0 5 1449 294 366 52 10 chr9 113262006 113262199 -10813973 - L2a LINE L2 -296 3130 2930 5 1449 567 229 245 22 chr9 113263098 113263420 -10812752 + L1M2 LINE L1 4284 4677 -1466 5 1449 1087 237 134 51 chr9 113263420 113263667 -10812505 - MTD LTR MaLR 0 419 168 5 1449 375 23 0 0 chr9 113263667 113263711 -10812461 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1449 1087 237 134 51 chr9 113263711 113263837 -10812335 - MTD LTR MaLR -252 167 15 5 1449 315 202 0 0 chr9 113263925 113264014 -10812158 + (CA)n Simple_repeat Simple_repeat 1 89 0 5 1449 252 186 0 0 chr9 113264054 113264113 -10812059 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1449 1176 238 94 3 chr9 113264119 113264439 -10811733 - ORR1D2 LTR MaLR -1 369 21 5 1449 6710 44 8 4 chr9 113264443 113265248 -10810924 - RLTR13C2 LTR ERVK 0 808 1 5 1449 420 20 0 0 chr9 113265267 113265316 -10810856 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1449 658 304 0 22 chr9 113265475 113265660 -10810512 + B3A SINE B2 18 198 0 5 1449 723 201 0 0 chr9 113266233 113266402 -10809770 + (TG)n Simple_repeat Simple_repeat 2 170 0 5 1449 423 0 0 0 chr9 113266497 113266544 -10809628 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1449 308 236 11 43 chr9 113267450 113267543 -10808629 + LTR33A LTR ERVL 431 520 0 5 1449 356 315 99 87 chr9 113268202 113268290 -10807882 + ORR1E LTR MaLR 1 87 -272 5 1449 2249 148 17 116 chr9 113268290 113268757 -10807415 - MTC LTR MaLR 0 421 1 5 1449 356 315 99 87 chr9 113268757 113268994 -10807178 + ORR1E LTR MaLR 88 336 -23 5 1449 330 80 0 0 chr9 113268994 113269044 -10807128 + (CCA)n Simple_repeat Simple_repeat 3 52 0 5 1449 356 315 99 87 chr9 113269044 113269072 -10807100 + ORR1E LTR MaLR 337 359 0 5 1449 502 310 74 30 chr9 113269264 113269467 -10806705 - MTEa LTR MaLR 0 379 168 5 1449 37716 27 3 8 chr9 113270250 113275470 -10800702 + L1Md_T LINE L1 398 5586 -297 5 1449 8502 33 0 7 chr9 113275471 113276473 -10799699 + L1Md_T LINE L1 5588 6582 0 5 1449 876 285 0 0 chr9 113276666 113276880 -10799292 + ID_B1 SINE B4 2 215 -9 5 1449 509 125 0 11 chr9 113277365 113277454 -10798718 + (TCC)n Simple_repeat Simple_repeat 1 88 0 5 1449 211 233 120 27 chr9 113277785 113277860 -10798312 + B4A SINE B4 1 82 -210 5 1449 190 333 73 9 chr9 113277979 113278088 -10798084 - MIRc SINE MIR -10 258 143 5 1449 527 288 29 0 chr9 113278299 113278438 -10797734 - B4 SINE B4 -147 145 3 5 1449 1063 275 40 28 chr9 113279592 113279917 -10796255 + MTEb LTR MaLR 30 358 -21 5 1449 210 200 0 52 chr9 113280335 113280488 -10795684 + CT-rich Low_complexity Low_complexity 2 146 0 5 1449 221 178 0 22 chr9 113280687 113280733 -10795439 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 5 1449 437 243 274 23 chr9 113280734 113280953 -10795219 - MLT1B LTR MaLR -45 345 72 5 1449 377 328 70 0 chr9 113281370 113281498 -10794674 - MamRep1879 DNA hAT? -78 138 2 5 1449 968 109 17 11 chr9 113281835 113282011 -10794161 + (GGA)n Simple_repeat Simple_repeat 1 177 0 5 1449 335 260 126 31 chr9 113282041 113282168 -10794004 + B1F2 SINE Alu 10 148 -1 5 1449 258 327 9 84 chr9 113282272 113282379 -10793793 + MER91A DNA Tip100 45 143 -53 5 1449 1616 136 67 84 chr9 113282445 113282862 -10793310 + RMER17C LTR ERVK 1 410 0 5 1449 869 311 0 21 chr9 113282970 113283210 -10792962 + B4A SINE B4 2 236 -56 5 1449 252 0 0 0 chr9 113283246 113283274 -10792898 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1449 226 228 35 92 chr9 113283926 113284013 -10792159 + Charlie24 DNA MER1_type 653 734 -1716 5 1449 188 191 56 125 chr9 113284987 113285059 -10791113 - L2 LINE L2 -1289 2130 2064 5 1449 1688 151 45 80 chr9 113285473 113285898 -10790274 + RMER17C LTR ERVK 1 410 0 5 1449 2024 192 13 5 chr9 113286785 113287183 -10788989 + Lx LINE L1 6254 6654 0 5 1449 1699 236 21 13 chr9 113287252 113287629 -10788543 - RMER5 LTR ERV1 0 534 155 5 1449 216 216 0 0 chr9 113287644 113287695 -10788477 + (ATG)n Simple_repeat Simple_repeat 2 52 0 5 1449 305 278 16 50 chr9 113287700 113287821 -10788351 - RMER5 LTR ERV1 -385 149 33 5 1449 1044 208 34 10 chr9 113287878 113288087 -10788085 + B3 SINE B2 3 216 0 5 1449 446 0 19 0 chr9 113288142 113288196 -10787976 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1449 180 125 0 30 chr9 113288287 113288320 -10787852 - MIRc SINE MIR -106 162 131 5 1449 274 385 33 33 chr9 113288446 113288499 -10787673 + LTR16A1 LTR ERVL 3 57 -399 5 1449 333 0 0 0 chr9 113288499 113288536 -10787636 + (CACCC)n Simple_repeat Simple_repeat 5 41 0 5 1449 274 385 33 33 chr9 113288536 113288635 -10787537 + LTR16A1 LTR ERVL 58 155 -301 5 1449 595 156 0 14 chr9 113289188 113289331 -10786841 + CT-rich Low_complexity Low_complexity 2 142 0 5 1449 567 0 0 0 chr9 113290275 113290338 -10785834 + (GGA)n Simple_repeat Simple_repeat 3 65 0 5 1449 594 187 89 0 chr9 113290622 113290745 -10785427 - RSINE1 SINE B4 -28 137 4 5 1449 224 291 98 49 chr9 113291421 113291544 -10784628 - MIR3 SINE MIR -22 186 58 5 1449 1104 115 33 12 chr9 113292071 113292924 -10783248 + (TAGA)n Simple_repeat Simple_repeat 1 871 0 5 1449 885 264 66 29 chr9 113293236 113293551 -10782621 + ORR1E LTR MaLR 10 372 -2 5 1449 307 320 69 26 chr9 113293773 113293936 -10782236 + MLT1K LTR MaLR 183 335 -275 5 1449 489 17 0 0 chr9 113295046 113295104 -10781068 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1449 318 26 0 0 chr9 113295104 113295142 -10781030 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1449 344 234 110 18 chr9 113295550 113295659 -10780513 + PB1D7 SINE Alu 2 120 0 5 1449 533 224 7 69 chr9 113295717 113295861 -10780311 + B4A SINE B4 131 265 -27 5 1449 381 93 0 0 chr9 113295867 113295921 -10780251 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1449 301 255 72 52 chr9 113296997 113297150 -10779022 + B4A SINE B4 1 156 -136 5 1449 391 249 5 5 chr9 113297281 113297511 -10778661 + (CA)n Simple_repeat Simple_repeat 1 230 0 5 1449 22 0 0 0 chr9 113298074 113298096 -10778076 + GC_rich Low_complexity Low_complexity 1 22 0 5 1449 192 125 0 0 chr9 113298156 113298188 -10777984 + (TCTCC)n Simple_repeat Simple_repeat 3 34 0 5 1449 6049 67 8 9 chr9 113298367 113299148 -10777024 - L1_Mus3 LINE L1 0 6638 5859 5 1449 419 52 17 0 chr9 113299516 113299574 -10776598 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 5 1449 385 332 117 79 chr9 113299800 113299940 -10776232 + L1MC4 LINE L1 2075 2209 -4006 5 1449 216 67 0 0 chr9 113299940 113299970 -10776202 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5 1449 385 332 117 79 chr9 113299970 113300221 -10775951 + L1MC4 LINE L1 2210 2480 -3735 5 1449 436 308 10 0 chr9 113300270 113300374 -10775798 + PB1D10 SINE Alu 3 107 -10 5 1449 510 295 93 28 chr9 113301137 113301385 -10774787 + L1MA4 LINE L1 5746 6009 -291 5 1449 514 209 12 9 chr9 113301517 113301633 -10774539 - B3A SINE B2 -82 113 1 5 1449 243 0 0 0 chr9 113301898 113301925 -10774247 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1449 848 49 0 53 chr9 113301925 113302076 -10774096 + (CAGAGA)n Simple_repeat Simple_repeat 2 144 0 5 1449 320 349 34 39 chr9 113302169 113302348 -10773824 + L1MC4a LINE L1 5729 5906 -1976 5 1449 782 256 14 45 chr9 113302374 113302595 -10773577 + B3 SINE B2 1 214 -2 5 1449 821 163 42 14 chr9 113302804 113302947 -10773225 + B1_Mur1 SINE Alu 3 149 0 5 1449 264 30 0 0 chr9 113302952 113302985 -10773187 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1449 394 231 27 36 chr9 113303658 113303770 -10772402 + MLT1A0 LTR MaLR 38 148 -217 5 1449 239 235 128 80 chr9 113303824 113303949 -10772223 + MLT1A0 LTR MaLR 244 374 0 5 1449 423 322 118 32 chr9 113303970 113304156 -10772016 - MER20 DNA MER1_type -1 218 17 5 1449 248 49 49 0 chr9 113304435 113304476 -10771696 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 5 1449 333 306 20 10 chr9 113304789 113304888 -10771284 + MTE-int LTR MaLR 1367 1466 -114 5 1449 740 265 111 64 chr9 113304969 113305267 -10770905 + MTEa LTR MaLR 16 327 -52 5 1449 1375 275 230 13 chr9 113305515 113306067 -10770105 + Lx8 LINE L1 6131 6802 -671 5 1449 1011 58 0 0 chr9 113306408 113306547 -10769625 + (CA)n Simple_repeat Simple_repeat 1 139 0 5 1449 851 292 60 40 chr9 113307022 113307371 -10768801 + MTEa LTR MaLR 1 356 -23 5 1449 456 239 17 50 chr9 113307639 113307758 -10768414 - RSINE1 SINE B4 -48 117 3 5 1449 546 57 0 0 chr9 113308026 113308096 -10768076 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1449 4950 133 44 6 chr9 113308315 113309107 -10767065 + Lx4B LINE L1 6233 7054 -4 5 1449 219 328 88 24 chr9 113309168 113309293 -10766879 + MIRb SINE MIR 115 247 -21 5 1449 626 248 12 54 chr9 113309614 113309780 -10766392 + B3A SINE B2 2 160 -38 5 1449 1118 100 12 0 chr9 113309789 113309959 -10766213 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 5 1449 720 116 33 0 chr9 113310876 113310997 -10765175 - L1_Mur2 LINE L1 -1138 4739 4615 5 1449 515 267 43 22 chr9 113311000 113311138 -10765034 + RSINE1 SINE B4 15 155 -10 5 1449 597 241 184 0 chr9 113311171 113311345 -10764827 - B3 SINE B2 -10 206 1 5 1449 793 149 112 0 chr9 113311395 113311529 -10764643 - B1_Mur4 SINE Alu 0 150 2 5 1449 330 26 0 0 chr9 113312243 113312282 -10763890 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1449 615 327 65 30 chr9 113312593 113312823 -10763349 + 7SK RNA RNA 2 239 -92 5 1449 473 251 76 92 chr9 113313080 113313264 -10762908 - MLT1G LTR MaLR 0 591 411 5 1449 628 346 12 56 chr9 113313338 113313589 -10762583 - MLT1G LTR MaLR -351 240 1 5 1449 1119 96 0 0 chr9 113313878 113314024 -10762148 + B1_Mus1 SINE Alu 2 147 -1 5 1449 1782 204 160 18 chr9 113314310 113314803 -10761369 + RMER15 LTR ERVL 9 571 -4 6 1449 22 0 0 0 chr9 113315629 113315651 -10760521 + AT_rich Low_complexity Low_complexity 1 22 0 6 1449 984 319 96 45 chr9 113315708 113316178 -10759994 + Lx8 LINE L1 6827 7320 -153 6 1449 333 298 57 147 chr9 113316048 113316327 -10759845 + RMER1C Other Other 1068 1321 -21 6 1449 666 248 0 21 chr9 113316347 113316491 -10759681 + ID_B1 SINE B4 78 218 -6 6 1449 258 266 52 88 chr9 113316373 113316509 -10759663 - YREP_Mm Unknown Unknown -1518 294 164 6 1449 878 328 24 65 chr9 113316758 113317140 -10759032 - MTEb LTR MaLR -13 366 1 6 1449 736 288 55 27 chr9 113318090 113318347 -10757825 + B4A SINE B4 29 292 0 6 1449 338 291 25 40 chr9 113318862 113318985 -10757187 - PB1D10 SINE Alu -17 132 9 6 1449 542 309 0 28 chr9 113318895 113319075 -10757097 - ID_B1 SINE B4 -49 175 1 6 1449 215 306 0 0 chr9 113319892 113319941 -10756231 + B4A SINE B4 94 142 -150 6 1449 854 197 11 22 chr9 113319941 113320204 -10755968 + (CAGAGA)n Simple_repeat Simple_repeat 1 260 0 6 1449 817 176 7 21 chr9 113320207 113320352 -10755820 + B4 SINE B4 127 269 -23 6 1449 477 0 0 0 chr9 113320352 113320405 -10755767 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1449 432 0 0 0 chr9 113320565 113320613 -10755559 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1449 855 19 0 9 chr9 113321639 113321746 -10754426 - B1_Mus2 SINE Alu 0 147 42 6 1449 295 148 112 56 chr9 113321683 113321790 -10754382 - RLTR25B LTR ERVK -519 509 397 6 1449 365 84 0 126 chr9 113321791 113321886 -10754286 + (TCTCTG)n Simple_repeat Simple_repeat 1 83 0 6 1449 438 247 0 0 chr9 113321887 113322065 -10754107 + CT-rich Low_complexity Low_complexity 2 179 0 6 1449 279 125 0 0 chr9 113322126 113322166 -10754006 - B1_Mus1 SINE Alu -88 60 21 6 1449 370 300 60 22 chr9 113322268 113322290 -10753882 - YREP_Mm Unknown Unknown -1482 330 247 6 1449 641 244 15 15 chr9 113322290 113322427 -10753745 + ID_B1 SINE B4 87 223 -1 6 1449 370 300 60 22 chr9 113322427 113322452 -10753720 - YREP_Mm Unknown Unknown -1482 246 140 6 1449 249 159 0 0 chr9 113322654 113322698 -10753474 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1449 831 248 76 25 chr9 113322698 113322975 -10753197 - B4 SINE B4 0 292 2 6 1449 216 67 0 0 chr9 113323620 113323650 -10752522 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1449 268 319 31 135 chr9 113323651 113323814 -10752358 - B1F SINE Alu -1 146 1 6 1449 525 296 15 7 chr9 113323814 113323874 -10752298 - ID SINE ID -143 81 21 6 1449 505 315 123 49 chr9 113323918 113324162 -10752010 - MLT1E1A LTR MaLR -7 673 412 6 1449 25 31 0 0 chr9 113324171 113324203 -10751969 + AT_rich Low_complexity Low_complexity 1 32 0 6 1449 298 175 9 46 chr9 113324955 113325063 -10751109 + CT-rich Low_complexity Low_complexity 6 109 0 6 1449 25 0 0 0 chr9 113325151 113325176 -10750996 + AT_rich Low_complexity Low_complexity 1 25 0 6 1449 349 300 117 39 chr9 113325208 113325454 -10750718 - MLT1E1A LTR MaLR -338 316 56 6 1449 1141 258 107 44 chr9 113326661 113327071 -10749101 - RMER13A LTR ERVK -395 465 30 6 1449 270 56 0 0 chr9 113328037 113328073 -10748099 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 6 1449 1054 110 6 6 chr9 113328268 113328442 -10747730 + (GGGA)n Simple_repeat Simple_repeat 2 175 0 6 1449 268 314 0 0 chr9 113328640 113328726 -10747446 + MIR SINE MIR 177 262 0 6 1449 644 258 9 61 chr9 113328770 113329001 -10747171 + ID_B1 SINE B4 3 221 -3 6 1449 204 40 0 0 chr9 113329022 113329047 -10747125 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 6 1449 959 196 36 16 chr9 113329326 113329518 -10746654 + B3A SINE B2 2 197 -1 6 1449 238 321 24 12 chr9 113329770 113329852 -10746320 + L1M7 LINE L1 418 500 -5718 6 1449 22 56 0 0 chr9 113329945 113329981 -10746191 + AT_rich Low_complexity Low_complexity 1 36 0 6 1449 202 95 48 0 chr9 113330017 113330059 -10746113 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 6 1449 379 52 17 17 chr9 113330057 113330116 -10746056 + (GGAGA)n Simple_repeat Simple_repeat 5 63 0 6 1449 295 280 64 45 chr9 113330336 113330538 -10745634 + L1M3 LINE L1 5088 5293 -847 6 1449 371 198 256 0 chr9 113330547 113330633 -10745539 + B3A SINE B2 2 109 -89 6 1449 572 239 84 58 chr9 113330851 113331042 -10745130 + B3A SINE B2 1 196 -2 6 1449 287 270 102 74 chr9 113331062 113331278 -10744894 + L1M7 LINE L1 1467 1688 -4530 6 1449 4889 53 3 3 chr9 113332730 113333332 -10742840 - L1_Mus3 LINE L1 0 6638 6037 6 1449 1833 115 32 4 chr9 113333332 113333611 -10742561 + L1_Mm LINE L1 4917 5203 -680 6 1449 636 296 85 23 chr9 113334161 113334450 -10741722 - ORR1E LTR MaLR -17 342 54 6 1449 7840 55 0 0 chr9 113334453 113335407 -10740765 + L1Md_T LINE L1 5627 6580 -2 6 1449 210 71 0 0 chr9 113335416 113335444 -10740728 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1449 689 221 26 32 chr9 113335977 113336131 -10740041 - RSINE1 SINE B4 -10 155 3 6 1449 453 230 30 0 chr9 113336142 113336242 -10739930 - B1F SINE Alu -7 142 40 6 1449 334 308 84 28 chr9 113336969 113337253 -10738919 + L1MA5 LINE L1 5981 6280 -20 6 1449 504 246 285 18 chr9 113337263 113337491 -10738681 + B4A SINE B4 4 292 0 6 1449 414 162 0 0 chr9 113337495 113337569 -10738603 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1449 2047 160 122 12 chr9 113337571 113338047 -10738125 + Lx3C LINE L1 6325 6963 -13 6 1449 183 42 0 0 chr9 113338047 113338071 -10738101 + (TAA)n Simple_repeat Simple_repeat 2 25 0 6 1449 3900 140 45 67 chr9 113338731 113339504 -10736668 - RMER6A LTR ERVK 0 756 1 6 1449 620 13 13 0 chr9 113340062 113340139 -10736033 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 1449 623 247 104 9 chr9 113340415 113340596 -10735576 + B3A SINE B2 20 212 -4 6 1449 1195 48 0 0 chr9 113340817 113340954 -10735218 + B1_Mus2 SINE Alu 1 137 -10 6 1449 402 21 0 0 chr9 113340954 113341001 -10735171 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1449 384 234 250 0 chr9 113341012 113341172 -10735000 + B4 SINE B4 1 200 -92 6 1449 242 310 0 12 chr9 113341196 113341281 -10734891 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1449 25 0 0 0 chr9 113341281 113341306 -10734866 + AT_rich Low_complexity Low_complexity 1 25 0 6 1449 713 248 7 0 chr9 113341377 113341522 -10734650 - ID_B1 SINE B4 -1 223 78 6 1449 507 279 17 52 chr9 113342422 113342596 -10733576 + MLT1D LTR MaLR 1 168 -337 6 1449 586 243 78 35 chr9 113342554 113342695 -10733477 + B3A SINE B2 68 214 -2 6 1449 491 340 28 37 chr9 113342687 113342901 -10733271 + B4A SINE B4 81 292 0 6 1449 267 54 0 0 chr9 113342906 113342943 -10733229 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1449 740 188 29 0 chr9 113342943 113343081 -10733091 - B1_Mur1 SINE Alu -7 142 1 6 1449 334 278 26 9 chr9 113343443 113343559 -10732613 + L1M5 LINE L1 5357 5474 -720 6 1449 283 269 12 0 chr9 113343979 113344072 -10732100 - L1_Mur3 LINE L1 -1344 4799 4675 6 1449 345 100 0 0 chr9 113344072 113344122 -10732050 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1449 429 272 111 0 chr9 113344126 113344306 -10731866 - L1MA5A LINE L1 -365 5932 5733 6 1449 1052 82 7 33 chr9 113344379 113344530 -10731642 - B1_Mus2 SINE Alu 0 147 1 6 1449 213 188 0 0 chr9 113344877 113344909 -10731263 + B4A SINE B4 55 86 -206 6 1449 611 267 5 112 chr9 113344925 113345140 -10731032 + B3A SINE B2 7 198 0 6 1449 723 256 101 17 chr9 113345149 113345328 -10730844 + B3 SINE B2 1 194 -22 6 1449 213 39 0 0 chr9 113345328 113345354 -10730818 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1449 225 0 0 0 chr9 113345354 113345378 -10730794 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1449 34 24 0 0 chr9 113345390 113345431 -10730741 + AT_rich Low_complexity Low_complexity 1 41 0 6 1449 463 268 95 99 chr9 113345435 113345646 -10730526 + B4A SINE B4 83 292 0 6 1449 203 258 56 131 chr9 113346378 113346485 -10729687 - MIRc SINE MIR -92 184 85 6 1449 903 267 9 5 chr9 113346633 113346855 -10729317 + ID_B1 SINE B4 2 224 0 6 1449 343 296 199 3 chr9 113346967 113347159 -10729013 - MTD LTR MaLR -62 357 104 6 1449 566 196 75 55 chr9 113347167 113347313 -10728859 + B1_Mur2 SINE Alu 1 149 0 6 1449 294 95 0 0 chr9 113347332 113347374 -10728798 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 6 1449 330 211 141 26 chr9 113347385 113347463 -10728709 - MTD LTR MaLR -330 89 3 6 1449 942 275 37 57 chr9 113348239 113348536 -10727636 + B4 SINE B4 1 291 -1 6 1449 339 25 0 0 chr9 113348939 113348979 -10727193 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1449 201 39 0 0 chr9 113348986 113349012 -10727160 + (CAGAGA)n Simple_repeat Simple_repeat 2 27 0 6 1449 322 175 25 0 chr9 113349711 113349791 -10726381 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1449 860 287 73 0 chr9 113349799 113350071 -10726101 - B4A SINE B4 0 292 1 6 1449 714 225 0 0 chr9 113350260 113350389 -10725783 - ID_B1 SINE B4 -6 218 90 6 1449 290 308 28 28 chr9 113350743 113350850 -10725322 - MER81 DNA AcHobo -5 109 3 6 1449 354 23 0 0 chr9 113350878 113350921 -10725251 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1449 739 267 5 70 chr9 113350957 113351158 -10725014 + B3A SINE B2 1 188 -10 6 1449 350 239 187 36 chr9 113351354 113351493 -10724679 - LTR50 LTR ERVL -635 160 1 6 1449 255 346 55 27 chr9 113351598 113351708 -10724464 + RSINE1 SINE B4 53 165 0 6 1449 308 329 121 42 chr9 113353249 113353604 -10722568 + LTR16C LTR ERVL 72 454 -35 6 1449 664 268 0 26 chr9 113353736 113353889 -10722283 + RSINE1 SINE B4 1 149 -16 6 1449 378 0 0 0 chr9 113353890 113353932 -10722240 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1449 1095 195 49 0 chr9 113354339 113354544 -10721628 + B3 SINE B2 1 215 -1 7 1449 522 286 0 0 chr9 113354799 113354904 -10721268 + MT2A LTR ERVL 280 384 -149 7 1449 914 226 14 36 chr9 113354959 113355179 -10720993 - B3 SINE B2 -1 215 1 7 1449 730 255 125 0 chr9 113355488 113355680 -10720492 + B3 SINE B2 1 216 0 7 1449 918 217 32 199 chr9 113356065 113356496 -10719676 + ORR1E LTR MaLR 1 359 0 7 1449 766 250 122 12 chr9 113356974 113357221 -10718951 - B4 SINE B4 -14 278 5 7 1449 393 22 0 0 chr9 113357265 113357311 -10718861 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 7 1449 3087 179 191 30 chr9 113358067 113358448 -10717724 - Lx7 LINE L1 0 7696 7291 7 1449 741 102 0 0 chr9 113358448 113358556 -10717616 + (GGGA)n Simple_repeat Simple_repeat 3 110 0 7 1449 3087 179 191 30 chr9 113358556 113358978 -10717194 - Lx7 LINE L1 -406 7290 6764 7 1449 819 238 36 41 chr9 113358981 113359200 -10716972 - ID_B1 SINE B4 -4 220 3 7 1449 364 278 113 0 chr9 113359337 113359488 -10716684 + L1ME3 LINE L1 5921 6088 -74 7 1449 371 80 0 0 chr9 113359607 113359657 -10716515 - URR1B DNA MER1_type -31 194 145 7 1449 9003 118 11 3 chr9 113359657 113360978 -10715194 - Lx2B LINE L1 -10 6990 5659 7 1449 1609 177 0 0 chr9 113360974 113361245 -10714927 + Lx2B LINE L1 5389 5659 -224 7 1449 971 152 46 0 chr9 113361245 113361396 -10714776 - URR1B DNA MER1_type -67 158 1 7 1449 330 26 0 0 chr9 113361410 113361449 -10714723 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1449 340 375 8 15 chr9 113361519 113361649 -10714523 + B4A SINE B4 164 292 0 7 1449 895 268 25 36 chr9 113361733 113362012 -10714160 + B4 SINE B4 3 278 -14 7 1449 233 304 18 89 chr9 113362767 113362824 -10713348 - LTR16A1 LTR ERVL -140 316 268 7 1449 945 277 23 34 chr9 113362824 113363086 -10713086 + B4 SINE B4 2 260 -32 7 1449 503 269 174 46 chr9 113363088 113363439 -10712733 + L2a LINE L2 2339 2734 -685 7 1449 212 329 213 64 chr9 113363605 113363995 -10712177 + L2a LINE L2 2978 3425 -1 7 1449 406 304 46 33 chr9 113364477 113364630 -10711542 + RSINE1 SINE B4 1 155 -10 7 1449 967 300 79 21 chr9 113364828 113365158 -10711014 + ORR1E LTR MaLR 9 357 -2 7 1449 429 250 0 0 chr9 113365583 113365679 -10710493 + PB1D10 SINE Alu 1 96 -21 7 1449 688 238 270 13 chr9 113365689 113365996 -10710176 + Lx9 LINE L1 7258 7643 -1 7 1449 339 25 0 0 chr9 113366033 113366073 -10710099 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 7 1449 240 35 0 0 chr9 113367583 113367612 -10708560 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1449 389 261 33 166 chr9 113370794 113371005 -10705167 + RMER15 LTR ERVL 1 183 -392 7 1449 441 0 0 0 chr9 113371023 113371072 -10705100 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1449 360 0 0 0 chr9 113371072 113371111 -10705061 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1449 212 193 0 57 chr9 113371899 113371987 -10704185 + GA-rich Low_complexity Low_complexity 2 84 0 7 1449 467 217 25 0 chr9 113372781 113372938 -10703234 + (TG)n Simple_repeat Simple_repeat 2 162 0 7 1449 293 200 24 24 chr9 113372950 113373032 -10703140 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 1449 927 299 64 46 chr9 113373034 113373315 -10702857 - B4 SINE B4 0 292 7 7 1449 358 62 0 44 chr9 113373420 113373488 -10702684 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 7 1449 1226 48 0 0 chr9 113373489 113373636 -10702536 - B1_Mm SINE Alu 0 147 1 7 1449 247 352 0 42 chr9 113374243 113374338 -10701834 + ORR1E LTR MaLR 1 91 -268 7 1449 330 246 34 16 chr9 113374554 113374642 -10701530 + L1MEf LINE L1 1696 1776 -4702 7 1449 396 320 107 13 chr9 113374645 113374794 -10701378 + RSINE1 SINE B4 3 165 0 7 1449 777 172 0 0 chr9 113374795 113374946 -10701226 + (CA)n Simple_repeat Simple_repeat 2 152 0 7 1449 301 335 57 13 chr9 113375023 113375180 -10700992 + L1MEf LINE L1 1787 1950 -4528 7 1449 642 268 13 13 chr9 113375624 113375779 -10700393 + RSINE1 SINE B4 5 159 -6 7 1449 198 71 0 0 chr9 113375779 113375807 -10700365 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 7 1449 363 305 165 17 chr9 113375836 113376295 -10699877 + L1MEf LINE L1 2460 2984 -3398 7 1449 301 294 36 89 chr9 113376425 113376593 -10699579 + RSINE1 SINE B4 7 165 0 7 1449 411 242 0 0 chr9 113376603 113376723 -10699449 + (CA)n Simple_repeat Simple_repeat 1 120 0 7 1449 299 261 127 16 chr9 113376747 113376951 -10699221 + L1MEf LINE L1 2999 3228 -3154 7 181 304 274 82 10 chr9 113377119 113377325 -10698847 + L1MEf LINE L1 3314 3534 -2848 7 1450 291 284 12 0 chr9 113377389 113377470 -10698702 - ID4_ SINE ID -1 82 1 7 1450 618 14 0 0 chr9 113377513 113377584 -10698588 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 7 1450 351 308 57 24 chr9 113377584 113377707 -10698465 - B1F SINE Alu -22 127 1 7 1450 933 274 91 27 chr9 113377709 113378118 -10698054 + L1MA5 LINE L1 3338 3772 -2374 7 1450 270 0 0 0 chr9 113378128 113378158 -10698014 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1450 390 166 168 3 chr9 113378227 113378330 -10697842 + L1MA5 LINE L1 5671 5789 -511 7 1450 458 318 61 29 chr9 113379030 113379409 -10696763 + L1MA5 LINE L1 5815 6205 -95 7 1450 722 206 132 12 chr9 113379411 113379578 -10696594 + B3 SINE B2 2 188 -28 7 1450 442 222 0 19 chr9 113380123 113380244 -10695928 - MTE2a LTR MaLR -4 375 262 7 1450 900 159 92 41 chr9 113380261 113380572 -10695600 - ORR1E LTR MaLR -2 368 1 7 1450 568 280 0 0 chr9 113381755 113381880 -10694292 + ID_B1 SINE B4 99 223 -1 7 1450 579 319 60 8 chr9 113381921 113382050 -10694122 + B4A SINE B4 29 158 -134 7 1450 1285 206 143 30 chr9 113382050 113382191 -10693981 + ORR1D1 LTR MaLR 1 175 -199 7 1450 705 56 0 0 chr9 113382191 113382281 -10693891 + (TC)n Simple_repeat Simple_repeat 2 91 0 7 1450 1285 206 143 30 chr9 113382281 113382475 -10693697 + ORR1D1 LTR MaLR 176 373 -1 7 1450 579 319 60 8 chr9 113382475 113382579 -10693593 + B4A SINE B4 159 273 -19 7 1450 3727 68 0 0 chr9 113383168 113383632 -10692540 - L1Md_F3 LINE L1 -233 5650 5187 7 1450 7892 26 6 2 chr9 113383632 113384545 -10691627 + L1Md_F3 LINE L1 5655 6570 -14 7 1450 904 251 87 65 chr9 113384614 113384994 -10691178 - MTE2a LTR MaLR 0 419 20 7 1450 704 284 5 35 chr9 113385416 113385617 -10690555 + B3A SINE B2 4 198 0 7 1450 256 308 0 60 chr9 113386534 113386584 -10689588 + B4 SINE B4 46 94 -198 7 1450 3224 72 58 88 chr9 113386584 113387117 -10689055 + MURVY-LTR LTR ERV1 3 519 0 7 1450 256 308 0 60 chr9 113387117 113387149 -10689023 + B4 SINE B4 95 123 -169 7 1450 1140 231 63 71 chr9 113387307 113387689 -10688483 + MTE2a LTR MaLR 1 379 0 7 1450 394 278 111 53 chr9 113387704 113387894 -10688278 - MIR SINE MIR -27 235 35 7 1450 902 307 77 20 chr9 113387920 113388362 -10687810 + L1M5 LINE L1 2460 2926 -3220 7 1450 3517 18 13 0 chr9 113388588 113388979 -10687193 + MTA_Mm LTR MaLR 1 396 0 7 1450 357 24 0 0 chr9 113390390 113390432 -10685740 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1450 405 241 221 2 chr9 113390462 113390594 -10685578 - ID_B1 SINE B4 -11 213 57 7 1450 288 53 0 0 chr9 113390948 113390986 -10685186 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1450 639 304 67 16 chr9 113391106 113391425 -10684747 + L1MA5A LINE L1 5591 5917 -1141 7 1450 1054 114 29 14 chr9 113391622 113391969 -10684203 + (TATG)n Simple_repeat Simple_repeat 1 351 0 7 1450 982 125 20 17 chr9 113391985 113392339 -10683833 + (TATG)n Simple_repeat Simple_repeat 1 355 0 7 1450 891 169 0 0 chr9 113392367 113392544 -10683628 + (TATG)n Simple_repeat Simple_repeat 2 178 0 7 1450 1699 280 16 5 chr9 113392556 113392987 -10683185 - Lx8 LINE L1 -444 7029 6594 7 1450 692 290 20 119 chr9 113392987 113393143 -10683029 - B4 SINE B4 -64 228 95 7 1450 204 67 0 0 chr9 113393143 113393173 -10682999 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 7 1450 692 290 20 119 chr9 113393173 113393267 -10682905 - B4 SINE B4 -198 94 3 7 1450 397 213 197 7 chr9 113393952 113394089 -10682083 - RSINE1 SINE B4 0 165 3 7 1450 406 305 52 0 chr9 113394097 113394251 -10681921 + LTR16A LTR ERVL 288 449 -2 7 1450 453 222 0 32 chr9 113394280 113394373 -10681799 - URR1A DNA MER1_type -132 94 5 7 1450 402 284 123 47 chr9 113394479 113394685 -10681487 - MLT1A LTR MaLR 0 374 169 7 1450 388 318 204 11 chr9 113394988 113395342 -10680830 + MLT2B3 LTR ERVL 33 508 -46 7 1450 1456 232 75 32 chr9 113395547 113395948 -10680224 - MTD LTR MaLR -1 418 1 7 1450 762 162 0 0 chr9 113396503 113396682 -10679490 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1450 274 250 0 0 chr9 113397801 113397869 -10678303 + L1ME4a LINE L1 6055 6122 -2 7 1450 195 184 0 0 chr9 113398192 113398230 -10677942 + (CATG)n Simple_repeat Simple_repeat 3 40 0 7 1450 603 202 38 30 chr9 113398556 113398689 -10677483 - B1F SINE Alu -9 140 7 7 1450 282 70 34 34 chr9 113398828 113398887 -10677285 + (CCCCCA)n Simple_repeat Simple_repeat 6 64 0 7 1450 538 298 160 31 chr9 113399490 113399715 -10676457 - B4A SINE B4 0 292 39 7 1450 1126 182 24 9 chr9 113399717 113399957 -10676215 - ORR1B2 LTR MaLR 0 367 97 7 1450 4882 79 1 16 chr9 113400621 113401288 -10674884 - Lx3A LINE L1 -59 5827 5171 7 1450 7266 99 45 10 chr9 113401288 113402363 -10673809 + Lx3A LINE L1 5857 6968 -13 7 1450 351 0 0 0 chr9 113402363 113402402 -10673770 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1450 1098 80 0 0 chr9 113402412 113402562 -10673610 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 7 1450 322 307 61 38 chr9 113402562 113402683 -10673489 + L1MEg LINE L1 1985 2110 -4132 7 1450 955 230 11 6 chr9 113403030 113403209 -10672963 + B3 SINE B2 29 208 -8 7 1450 375 23 0 0 chr9 113403242 113403286 -10672886 + (CCA)n Simple_repeat Simple_repeat 2 45 0 7 1450 189 0 0 0 chr9 113403419 113403440 -10672732 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1450 320 235 0 105 chr9 113403591 113403608 -10672564 - BC1_Mm scRNA scRNA -65 87 3 7 1450 451 205 0 0 chr9 113403608 113403686 -10672486 - ID SINE ID -144 80 3 7 1450 3990 191 11 6 chr9 113403773 113404479 -10671693 - Lx9 LINE L1 -153 7491 6782 7 1450 453 246 27 18 chr9 113405247 113405359 -10670813 + ID_B1 SINE B4 8 120 -104 7 1450 223 256 0 85 chr9 113405359 113405500 -10670672 + (CATCC)n Simple_repeat Simple_repeat 4 132 0 7 1450 416 205 41 74 chr9 113405500 113405621 -10670551 + ID_B1 SINE B4 98 214 -10 7 1450 383 324 109 61 chr9 113405831 113406227 -10669945 + L1MEg LINE L1 4149 4554 -1592 7 1450 1401 178 79 110 chr9 113406227 113406618 -10669554 + MTE2a LTR MaLR 1 379 0 7 1450 383 324 109 61 chr9 113406618 113406703 -10669469 + L1MEg LINE L1 4555 4623 -1523 7 1450 444 37 0 0 chr9 113406703 113406757 -10669415 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1450 383 324 109 61 chr9 113406757 113406821 -10669351 + L1MEg LINE L1 4624 4682 -1464 7 1450 1292 87 44 0 chr9 113406821 113407004 -10669168 + B2_Mm2 SINE B2 1 191 -4 7 1450 383 324 109 61 chr9 113407004 113407298 -10668874 + L1MEg LINE L1 4683 5030 -1116 7 1450 209 385 91 24 chr9 113407364 113407529 -10668643 + L2 LINE L2 2774 2949 -470 7 1450 535 279 9 0 chr9 113407793 113407904 -10668268 + Lx8 LINE L1 7137 7248 -225 8 1450 564 140 0 0 chr9 113407954 113408047 -10668125 + (CA)n Simple_repeat Simple_repeat 1 93 0 8 1450 271 288 116 31 chr9 113408178 113408307 -10667865 - MLT1I LTR MaLR -8 504 365 8 1450 330 363 29 68 chr9 113408374 113408581 -10667591 - MLT1I LTR MaLR -137 274 76 8 1450 7823 70 5 24 chr9 113408975 113410173 -10665999 - L1_Mus2 LINE L1 -1 6565 5383 8 1450 198 0 0 0 chr9 113410337 113410359 -10665813 + (CAG)n Simple_repeat Simple_repeat 2 23 0 8 1450 404 348 68 38 chr9 113410389 113410655 -10665517 - MLT1H LTR MaLR -234 315 42 8 1450 1055 289 133 11 chr9 113410689 113411050 -10665122 + MTD LTR MaLR 1 405 -14 8 1450 771 112 0 0 chr9 113411101 113411217 -10664955 + (CAGAGA)n Simple_repeat Simple_repeat 2 117 0 8 1450 240 284 12 36 chr9 113411916 113412000 -10664172 - ID4_ SINE ID 0 83 2 8 1450 515 299 61 7 chr9 113412311 113412459 -10663713 - ID_B1 SINE B4 -9 215 60 8 1450 1058 290 42 48 chr9 113412466 113412860 -10663312 - MTE2b LTR MaLR -30 389 1 8 1450 295 314 95 79 chr9 113413050 113413428 -10662744 + MLT1H LTR MaLR 96 549 0 8 1450 231 61 0 0 chr9 113413552 113413585 -10662587 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 8 1450 1232 22 0 0 chr9 113413585 113413723 -10662449 - B1_Mus2 SINE Alu -8 139 2 8 1450 1639 247 63 15 chr9 113413724 113414119 -10662053 - MTD LTR MaLR -5 414 1 8 1450 635 269 127 0 chr9 113414832 113415029 -10661143 + ID_B1 SINE B4 2 223 -1 8 1450 418 316 104 42 chr9 113415415 113415656 -10660516 + MIR SINE MIR 7 262 0 8 1450 213 359 116 70 chr9 113415894 113416179 -10659993 + L2b LINE L2 3078 3375 0 8 1450 1095 237 105 41 chr9 113417781 113418124 -10658048 - MTEa LTR MaLR -13 366 2 8 1450 953 167 33 16 chr9 113419102 113419285 -10656887 + B2_Mm2 SINE B2 2 187 -8 8 1450 700 241 133 141 chr9 113419309 113419691 -10656481 - MTE2a LTR MaLR 0 379 1 8 1450 585 284 0 41 chr9 113420852 113421021 -10655151 + RSINE1 SINE B4 4 165 0 8 1450 968 190 393 30 chr9 113421464 113421762 -10654410 + MTD LTR MaLR 1 406 -13 8 1450 546 133 0 0 chr9 113422695 113422808 -10653364 + (TCTG)n Simple_repeat Simple_repeat 4 116 0 8 1450 206 200 0 0 chr9 113422810 113422845 -10653327 + polypyrimidine Low_complexity Low_complexity 3 37 0 8 1450 261 268 56 0 chr9 113423015 113423086 -10653086 + B4 SINE B4 10 84 -208 8 1450 944 121 17 6 chr9 113423110 113423284 -10652888 + (GGGA)n Simple_repeat Simple_repeat 1 176 0 8 1450 450 0 0 0 chr9 113423287 113423337 -10652835 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 8 1450 828 160 21 0 chr9 113423339 113423483 -10652689 + B1_Mur2 SINE Alu 3 149 0 8 1450 313 308 102 27 chr9 113423522 113423669 -10652503 + L1ME3 LINE L1 6003 6160 -2 8 1450 475 199 98 133 chr9 113423681 113423842 -10652330 + B3A SINE B2 3 162 -36 8 1450 306 0 0 0 chr9 113423842 113423876 -10652296 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1450 475 199 98 133 chr9 113423876 113423917 -10652255 + B3A SINE B2 163 198 0 8 1450 225 65 0 0 chr9 113424838 113424869 -10651303 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1450 528 100 0 0 chr9 113425043 113425123 -10651049 + (TG)n Simple_repeat Simple_repeat 2 81 0 8 1450 241 266 150 12 chr9 113425372 113425452 -10650720 + PB1D10 SINE Alu 18 108 -9 8 1450 1435 35 0 0 chr9 113425903 113426076 -10650096 - L1Md_T LINE L1 0 6582 6410 8 1450 230 316 49 25 chr9 113426410 113426491 -10649681 - MLT1G1 LTR MaLR -490 89 7 8 1450 194 62 0 30 chr9 113426597 113426630 -10649542 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 8 1450 655 221 190 19 chr9 113427050 113427321 -10648851 - MTE2b LTR MaLR -11 368 3 8 1450 315 0 0 0 chr9 113427332 113427367 -10648805 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1450 791 139 66 0 chr9 113427527 113427649 -10648523 - B3 SINE B2 -86 130 1 8 1450 217 361 18 18 chr9 113427732 113427842 -10648330 + MIRm SINE MIR 167 276 0 8 1450 266 240 101 51 chr9 113427887 113427966 -10648206 + L2c LINE L2 3305 3387 0 8 1450 333 267 67 100 chr9 113428124 113428274 -10647898 - B1F SINE Alu 0 149 5 8 1450 699 243 122 44 chr9 113428365 113428636 -10647536 + B4 SINE B4 1 292 0 8 1450 2160 134 61 6 chr9 113429388 113429747 -10646425 - MTC LTR MaLR -7 414 36 8 1450 312 250 53 0 chr9 113429825 113429901 -10646271 - RMER15 LTR ERVL -69 506 427 8 1450 378 0 0 0 chr9 113430176 113430218 -10645954 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1450 492 93 0 0 chr9 113430218 113430292 -10645880 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 1450 836 267 41 22 chr9 113431234 113431502 -10644670 - B4A SINE B4 -19 273 1 8 1450 412 296 46 55 chr9 113431855 113432073 -10644099 - B3 SINE B2 0 216 1 8 1450 783 216 7 15 chr9 113434407 113434543 -10641629 + ETnERV2-int LTR ERVK 7062 7196 -210 8 1450 186 329 59 0 chr9 113435010 113435095 -10641077 - L2c LINE L2 -52 3335 3246 8 1450 252 342 136 59 chr9 113435243 113435582 -10640590 + LTR16A1 LTR ERVL 1 365 -91 8 1450 432 0 0 0 chr9 113436350 113436398 -10639774 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1450 995 280 35 24 chr9 113436441 113436730 -10639442 - B4A SINE B4 0 292 1 8 1450 470 304 125 43 chr9 113437040 113437576 -10638596 - L1ME1 LINE L1 -228 5936 5346 8 1450 287 372 98 8 chr9 113437604 113437726 -10638446 - MIRb SINE MIR -70 198 66 8 1450 241 258 61 0 chr9 113438126 113438192 -10637980 + URR1A DNA MER1_type 37 106 -120 8 1450 753 168 61 0 chr9 113438192 113438323 -10637849 + L1VL2 LINE L1 68 206 -6129 8 1450 2662 204 36 97 chr9 113438325 113439273 -10636899 + L1VL2 LINE L1 1 670 -5665 8 1450 20233 142 12 7 chr9 113440577 113444242 -10631930 + L1VL4 LINE L1 952 4632 -1254 8 1450 270 0 0 0 chr9 113444242 113444272 -10631900 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 8 1450 10199 135 8 15 chr9 113444272 113444384 -10631788 + L1VL4 LINE L1 4624 4740 -1137 8 1450 37071 35 2 9 chr9 113444385 113449597 -10626575 + L1Md_T LINE L1 416 5586 -297 8 1450 8665 31 0 0 chr9 113449597 113450591 -10625581 + L1Md_T LINE L1 5587 6580 -2 8 1450 4723 169 4 4 chr9 113450591 113451404 -10624768 + L1_Mm LINE L1 4737 5549 -334 8 1450 3002 119 9 9 chr9 113451404 113451870 -10624302 + Lx LINE L1 6189 6654 0 8 1450 573 111 197 0 chr9 113451884 113452001 -10624171 + URR1A DNA MER1_type 87 226 0 8 1450 381 246 3 12 chr9 113452160 113452276 -10623896 + L1M5 LINE L1 5387 5502 -622 8 1450 1534 112 13 0 chr9 113452741 113452973 -10623199 - ORR1B1 LTR MaLR 0 394 160 8 1450 395 257 67 71 chr9 113453093 113453332 -10622840 - Charlie1b DNA MER1_type -1 522 285 8 1450 374 307 94 41 chr9 113453719 113453889 -10622283 + B4A SINE B4 107 285 -7 8 1450 249 33 0 0 chr9 113453977 113454007 -10622165 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1450 850 289 24 121 chr9 113454604 113455017 -10621155 - MTE2a LTR MaLR -6 373 1 8 1450 436 59 0 29 chr9 113455851 113455870 -10620302 + (TGGA)n Simple_repeat Simple_repeat 1 18 0 8 1450 579 15 0 0 chr9 113455870 113455938 -10620234 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 8 1450 436 59 0 29 chr9 113455938 113455988 -10620184 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 8 1450 283 232 34 51 chr9 113456010 113456128 -10620044 + (TGGA)n Simple_repeat Simple_repeat 1 116 0 8 1450 962 182 39 39 chr9 113457630 113457859 -10618313 - MTEa LTR MaLR -9 370 142 8 1450 1117 66 0 0 chr9 113458000 113458137 -10618035 - B1_Mus1 SINE Alu -10 138 2 8 1450 185 327 19 0 chr9 113458450 113458502 -10617670 + MIRb SINE MIR 113 165 -103 8 1450 940 299 50 18 chr9 113458711 113458994 -10617178 + B4A SINE B4 1 292 0 8 1450 470 292 47 23 chr9 113459618 113459790 -10616382 + MLT1A0 LTR MaLR 1 176 -189 8 1450 1205 55 0 0 chr9 113460433 113460579 -10615593 + B1_Mus2 SINE Alu 2 147 0 8 1450 268 23 0 64 chr9 113460579 113460626 -10615546 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 8 1450 357 159 0 0 chr9 113460658 113460721 -10615451 + CT-rich Low_complexity Low_complexity 4 66 0 8 1450 238 310 61 49 chr9 113460844 113461007 -10615165 + MIRb SINE MIR 93 257 -11 8 1450 411 335 38 82 chr9 113461009 113461276 -10614896 + MLT1F2 LTR MaLR 1 255 -305 8 1450 606 250 29 0 chr9 113461229 113461369 -10614803 - B1_Mus2 SINE Alu 0 147 4 8 1450 189 107 0 0 chr9 113461413 113461441 -10614731 + (CCCCCT)n Simple_repeat Simple_repeat 1 28 0 8 1450 264 333 0 0 chr9 113461442 113461541 -10614631 + C-rich Low_complexity Low_complexity 6 104 0 8 1450 248 333 50 124 chr9 113461583 113461744 -10614428 + MLT1F2 LTR MaLR 257 405 -164 8 1450 4330 115 48 11 chr9 113461924 113462576 -10613596 + RLTR33 LTR ERVK 1 676 -2 8 1450 246 265 120 20 chr9 113462578 113462678 -10613494 + MLT1F2 LTR MaLR 384 493 -67 8 1450 297 272 98 0 chr9 113462771 113462863 -10613309 - MLT2B1 LTR ERVL -5 562 462 8 1450 280 196 0 0 chr9 113462865 113462911 -10613261 - RLTR44-int LTR ERVK -2766 46 1 8 1450 2226 125 79 13 chr9 113462911 113463291 -10612881 - RLTR44A LTR ERVK 0 405 1 8 1450 385 324 0 9 chr9 113463297 113463409 -10612763 - MT2A LTR ERVL -110 423 313 8 1450 988 167 0 56 chr9 113463419 113463616 -10612556 + ORR1C2 LTR MaLR 1 186 -198 8 1450 741 174 12 6 chr9 113463616 113463778 -10612394 + CT-rich Low_complexity Low_complexity 1 163 0 8 1450 312 335 92 35 chr9 113463788 113463902 -10612270 - MT2A LTR ERVL -258 275 1 8 1450 365 294 96 0 chr9 113463902 113464048 -10612124 - MTEa LTR MaLR -219 160 1 8 1450 4236 181 70 20 chr9 113464481 113465559 -10610613 + RMER12 LTR ERVK 1 1572 0 8 1450 902 244 90 8 chr9 113466109 113466365 -10609807 - MTEa LTR MaLR -7 372 96 8 1450 397 335 20 12 chr9 113467638 113467806 -10608366 + MLT1H1 LTR MaLR 10 209 -386 8 1450 225 214 15 140 chr9 113467789 113467925 -10608247 + MT2B LTR ERVL 145 263 -338 8 1450 604 186 8 0 chr9 113467830 113467948 -10608224 + B1_Mur3 SINE Alu 14 132 -17 8 1450 254 203 67 119 chr9 113467985 113468119 -10608053 + MLT1H1 LTR MaLR 197 323 -225 8 1450 234 354 62 0 chr9 113468148 113468261 -10607911 + MLT1H1 LTR MaLR 444 563 -6 8 1450 952 156 233 22 chr9 113468472 113468594 -10607578 - RMER1A Other Other 0 1030 911 9 1450 225 94 0 0 chr9 113468594 113468626 -10607546 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1450 952 156 233 22 chr9 113468626 113468726 -10607446 - RMER1A Other Other -120 910 761 9 1450 768 241 35 40 chr9 113468801 113468836 -10607336 - B3A SINE B2 0 198 167 9 1450 333 0 0 0 chr9 113468836 113468873 -10607299 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1450 405 0 0 0 chr9 113468873 113468917 -10607255 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1450 768 241 35 40 chr9 113468917 113469079 -10607093 - B3A SINE B2 -32 166 2 9 1450 332 271 50 40 chr9 113469295 113469395 -10606777 + MLT1H2 LTR MaLR 5 105 -384 9 1450 1231 295 86 53 chr9 113469580 113469823 -10606349 + MT2A LTR ERVL 6 244 -289 9 1450 180 0 0 0 chr9 113469823 113469843 -10606329 + (ATG)n Simple_repeat Simple_repeat 2 21 0 9 1450 1231 295 86 53 chr9 113469843 113470110 -10606062 + MT2A LTR ERVL 245 533 0 9 1450 1723 233 27 30 chr9 113471672 113472079 -10604093 + Lx7 LINE L1 7011 7416 -280 9 1450 335 276 51 73 chr9 113472135 113472272 -10603900 - B3A SINE B2 -1 197 64 9 1450 382 216 30 18 chr9 113472510 113472675 -10603497 + (CATA)n Simple_repeat Simple_repeat 1 167 0 9 1450 304 259 11 11 chr9 113472675 113472765 -10603407 + (CA)n Simple_repeat Simple_repeat 1 90 0 9 1450 358 251 30 13 chr9 113472772 113473075 -10603097 + (CATA)n Simple_repeat Simple_repeat 1 307 0 9 1450 718 246 26 23 chr9 113473194 113473384 -10602788 - ID_B1 SINE B4 -69 223 30 9 1450 569 247 122 31 chr9 113473531 113473727 -10602445 + B3 SINE B2 2 215 -1 9 1450 628 303 73 16 chr9 113473744 113473935 -10602237 + ID_B1 SINE B4 3 204 -20 9 1450 450 114 0 0 chr9 113473937 113474007 -10602165 + (GA)n Simple_repeat Simple_repeat 1 70 0 9 1450 668 288 105 11 chr9 113475006 113475273 -10600899 + B4A SINE B4 1 292 0 9 1450 582 86 0 0 chr9 113475301 113475382 -10600790 + (CAGA)n Simple_repeat Simple_repeat 4 84 0 9 1450 590 277 0 0 chr9 113475401 113475542 -10600630 + B1F SINE Alu 1 141 -8 9 1450 574 142 0 26 chr9 113475547 113475663 -10600509 + GA-rich Low_complexity Low_complexity 4 116 0 9 1450 228 343 10 10 chr9 113476305 113476405 -10599767 + LTR16A LTR ERVL 242 341 -110 9 1450 315 0 0 0 chr9 113476535 113476570 -10599602 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1450 358 259 0 0 chr9 113476646 113476727 -10599445 - L2a LINE L2 -2 3424 3344 9 1450 449 369 72 21 chr9 113476763 113477095 -10599077 - LTR16A LTR ERVL -1 450 102 9 1450 487 206 29 10 chr9 113477373 113477476 -10598696 + ID_B1 SINE B4 112 216 -8 9 1450 486 33 0 0 chr9 113477502 113477562 -10598610 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1450 720 191 37 0 chr9 113477566 113477702 -10598470 - B3A SINE B2 -57 141 1 9 1450 587 207 9 0 chr9 113478464 113478580 -10597592 + RSINE1 SINE B4 13 129 -36 9 1450 189 107 0 0 chr9 113478584 113478612 -10597560 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1450 25 0 0 0 chr9 113478767 113478792 -10597380 + AT_rich Low_complexity Low_complexity 1 25 0 9 1450 726 207 62 207 chr9 113478792 113478944 -10597228 + B4 SINE B4 1 100 -192 9 1450 1280 73 6 0 chr9 113478944 113479121 -10597051 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 9 1450 726 207 62 207 chr9 113479121 113479291 -10596881 + B4 SINE B4 101 276 -16 9 1450 189 0 0 0 chr9 113479294 113479315 -10596857 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1450 383 83 0 16 chr9 113479315 113479376 -10596796 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 1450 287 229 39 77 chr9 113479667 113479771 -10596401 - L1MA8 LINE L1 -25 6266 6167 9 1450 485 275 83 63 chr9 113480129 113480381 -10595791 + B4A SINE B4 1 257 -35 9 1450 348 24 0 0 chr9 113480395 113480436 -10595736 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1450 914 273 21 12 chr9 113480762 113481003 -10595169 - B4A SINE B4 -2 290 48 9 1450 1001 185 11 5 chr9 113481028 113481213 -10594959 + B3 SINE B2 1 186 -30 9 1450 278 314 85 8 chr9 113481570 113481830 -10594342 + L1M5 LINE L1 2374 2653 -3493 9 1450 22 35 0 0 chr9 113481830 113481859 -10594313 + AT_rich Low_complexity Low_complexity 1 29 0 9 1450 628 229 6 6 chr9 113481897 113481988 -10594184 + (TA)n Simple_repeat Simple_repeat 2 92 0 9 1450 3281 51 0 5 chr9 113481988 113482384 -10593788 + MTA_Mm LTR MaLR 1 394 -2 9 1450 628 229 6 6 chr9 113482384 113482472 -10593700 + (TA)n Simple_repeat Simple_repeat 2 89 0 9 1450 1052 265 48 72 chr9 113482911 113483285 -10592887 + MTE2a LTR MaLR 6 370 -9 9 1450 219 250 0 18 chr9 113483647 113483704 -10592468 + B4A SINE B4 85 140 -152 9 1450 344 228 43 11 chr9 113483656 113483749 -10592423 + PB1D10 SINE Alu 8 103 -14 9 1450 212 0 0 35 chr9 113484496 113484525 -10591647 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 9 1450 1126 277 29 125 chr9 113485021 113485438 -10590734 + MTE2b LTR MaLR 1 377 -2 9 1450 456 262 46 38 chr9 113485579 113485710 -10590462 - ID_B1 SINE B4 -9 215 84 9 1450 405 351 8 0 chr9 113485928 113486062 -10590110 - RSINE1 SINE B4 -28 137 3 9 1450 306 0 0 0 chr9 113486637 113486671 -10589501 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1450 519 318 41 41 chr9 113486715 113486935 -10589237 - LTR16A1 LTR ERVL -11 445 226 9 1450 491 253 29 71 chr9 113487890 113488060 -10588112 + RSINE1 SINE B4 3 165 0 9 1450 207 0 0 0 chr9 113488087 113488110 -10588062 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1450 1040 128 6 0 chr9 113488969 113489148 -10587024 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 9 1450 1197 63 0 0 chr9 113489248 113489391 -10586781 - B1_Mus1 SINE Alu -5 143 1 9 1450 921 201 54 0 chr9 113490114 113490298 -10585874 + B3 SINE B2 5 198 -18 9 1450 315 203 0 0 chr9 113490309 113490383 -10585789 + (ATGGTG)n Simple_repeat Simple_repeat 1 74 0 9 1450 290 314 31 41 chr9 113490383 113490579 -10585593 + L1MB4 LINE L1 4399 4592 -1548 9 1450 800 188 7 20 chr9 113490636 113490783 -10585389 - B1F SINE Alu 0 149 5 9 1450 431 236 99 38 chr9 113490823 113491029 -10585143 + L1MB4 LINE L1 4636 4854 -1292 9 1450 272 48 24 0 chr9 113491069 113491111 -10585061 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 9 1450 215 270 108 0 chr9 113491111 113491185 -10584987 - ID4_ SINE ID -1 82 1 9 1450 443 340 90 37 chr9 113491189 113491566 -10584606 + L1MB4 LINE L1 4902 5305 -841 9 1450 342 0 0 0 chr9 113491566 113491604 -10584568 + (TTG)n Simple_repeat Simple_repeat 2 39 0 9 1450 1106 197 24 0 chr9 113491604 113491812 -10584360 - ID_B1 SINE B4 -11 213 1 9 1450 320 258 53 120 chr9 113491812 113492106 -10584066 + L1MB4 LINE L1 5306 5566 -605 9 1450 442 316 23 23 chr9 113492189 113492406 -10583766 + L1MB4 LINE L1 5606 5822 -361 9 1450 365 272 150 27 chr9 113492467 113492731 -10583441 + L1MB4 LINE L1 5801 6107 -76 9 1450 795 219 19 56 chr9 113492793 113493006 -10583166 + B4 SINE B4 2 206 -86 9 1450 4412 143 60 66 chr9 113493020 113493910 -10582262 - RMER19B LTR ERVK -12 890 7 9 1450 242 282 84 0 chr9 113493908 113493979 -10582193 + B4 SINE B4 206 282 -10 9 1450 279 150 0 0 chr9 113493995 113494055 -10582117 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1450 459 48 0 0 chr9 113494256 113494318 -10581854 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1450 437 258 180 13 chr9 113494350 113494578 -10581594 - B4A SINE B4 -26 266 1 9 1450 1190 68 7 0 chr9 113494709 113494856 -10581316 + B1_Mus1 SINE Alu 1 148 0 9 1450 256 178 14 14 chr9 113494857 113494931 -10581241 + A-rich Low_complexity Low_complexity 2 75 0 9 1450 910 219 5 5 chr9 113495099 113495296 -10580876 + B3 SINE B2 9 205 -11 9 1450 707 250 192 17 chr9 113495328 113495568 -10580604 + B4A SINE B4 5 286 -6 9 1450 516 32 0 0 chr9 113496388 113496450 -10579722 + (CTTG)n Simple_repeat Simple_repeat 2 63 0 9 1450 782 224 77 13 chr9 113496726 113496961 -10579211 + ORR1E LTR MaLR 16 298 -81 9 1450 570 266 148 24 chr9 113497162 113497509 -10578663 + L1MA5 LINE L1 5204 5597 -703 9 1450 576 282 72 0 chr9 113497519 113497700 -10578472 + B3A SINE B2 1 194 -4 9 1450 567 262 61 14 chr9 113497720 113497867 -10578305 + RSINE1 SINE B4 8 161 -4 9 1450 1187 257 113 38 chr9 113497930 113498163 -10578009 + L1MA5 LINE L1 5596 5856 -444 9 1450 1394 77 0 58 chr9 113498163 113498369 -10577803 - B2_Mm2 SINE B2 -1 194 1 9 1450 1187 268 167 28 chr9 113498369 113498767 -10577405 + L1MA5 LINE L1 5857 6300 0 9 1450 236 263 29 39 chr9 113498768 113498871 -10577301 + Lx8 LINE L1 7353 7454 -19 9 1450 779 211 0 49 chr9 113498872 113499036 -10577136 - B3 SINE B2 -60 156 1 9 1450 597 65 0 0 chr9 113499450 113499542 -10576630 + ORR1A2 LTR MaLR 1 92 -235 9 1450 3216 83 0 48 chr9 113499542 113500000 -10576172 - L1_Mus2 LINE L1 -2 6564 6129 9 1450 32185 73 42 10 chr9 113500001 113501099 -10575073 - L1_Mus2 LINE L1 -439 6127 5002 1 1450 1234 127 16 0 chr9 113501099 113501288 -10574884 - B2_Mm1t SINE B2 0 193 2 2 1450 32185 94 9 14 chr9 113501288 113503318 -10572854 - L1_Mus2 LINE L1 -882 5001 2995 1 1450 477 0 0 0 chr9 113503318 113503371 -10572801 + (TTTTG)n Simple_repeat Simple_repeat 1 53 0 3 1450 32185 106 11 55 chr9 113503371 113505796 -10570376 - L1_Mus2 LINE L1 -2889 2994 675 1 1450 1730 106 9 0 chr9 113505806 113506072 -10570100 + ORR1A2 LTR MaLR 49 319 -8 4 1450 1130 229 71 113 chr9 113506078 113506457 -10569715 + ORR1D2 LTR MaLR 6 368 -2 5 1450 408 386 22 9 chr9 113506499 113506721 -10569451 - MIR SINE MIR -6 256 32 6 1450 313 22 21 21 chr9 113506892 113506939 -10569233 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 7 1450 1448 147 77 4 chr9 113507026 113507272 -10568900 - MTD LTR MaLR -155 264 1 8 1450 419 323 30 60 chr9 113507272 113507466 -10568706 + B4A SINE B4 105 292 0 9 181 511 325 110 62 chr9 113507954 113508390 -10567782 + RLTR12B LTR ERVK 42 498 -30 1 1451 343 219 61 0 chr9 113508847 113508929 -10567243 + PB1D7 SINE Alu 6 92 -28 1 1451 223 338 14 0 chr9 113508914 113508988 -10567184 + PB1D10 SINE Alu 27 101 -16 1 1451 438 318 150 43 chr9 113509193 113509380 -10566792 + MER20 DNA MER1_type 8 214 -5 1 1451 1044 179 50 25 chr9 113510114 113510314 -10565858 + ID_B1 SINE B4 8 212 -12 1 1451 291 305 37 37 chr9 113510204 113510340 -10565832 - YREP_Mm Unknown Unknown -1518 294 159 1 1451 252 0 0 0 chr9 113510956 113510984 -10565188 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1451 339 324 60 94 chr9 113511027 113511163 -10565009 - RMER15 LTR ERVL -13 562 423 1 1451 624 191 63 8 chr9 113511163 113511290 -10564882 + B1_Mur3 SINE Alu 1 134 -15 1 1451 339 324 60 94 chr9 113511290 113511312 -10564860 - RMER15 LTR ERVL -153 422 409 1 1451 351 0 0 0 chr9 113511312 113511351 -10564821 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1451 339 324 60 94 chr9 113511351 113511426 -10564746 - RMER15 LTR ERVL -167 408 337 1 1451 640 211 42 14 chr9 113512632 113512776 -10563396 - B1_Mur1 SINE Alu -1 148 1 2 1451 310 256 96 12 chr9 113512850 113512933 -10563239 - PB1D10 SINE Alu -27 90 1 2 1451 447 19 0 0 chr9 113512964 113513016 -10563156 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1451 447 272 189 36 chr9 113513034 113513282 -10562890 - B4A SINE B4 -6 286 1 2 1451 486 257 50 22 chr9 113513575 113513714 -10562458 + MLT1A1 LTR MaLR 2 144 -264 2 1451 3928 152 122 4 chr9 113513897 113514653 -10561519 - RMER19B LTR ERVK 0 902 1 2 1451 474 18 0 0 chr9 113515829 113515884 -10560288 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1451 332 153 158 6 chr9 113516765 113516838 -10559334 - MTEa LTR MaLR 0 379 299 2 1451 231 283 244 31 chr9 113517143 113517336 -10558836 - L2a LINE L2 -7 3419 3186 2 1451 6789 29 0 10 chr9 113517430 113518235 -10557937 + L1Md_F2 LINE L1 5785 6581 -1 2 1451 246 376 160 9 chr9 113518311 113518523 -10557649 - L2a LINE L2 -250 3176 2933 2 1451 1608 133 40 179 chr9 113518543 113519019 -10557153 - RMER17C LTR ERVK 0 410 1 3 1451 745 298 147 27 chr9 113519042 113519297 -10556875 - MLT1C LTR MaLR -13 454 186 3 1451 447 227 17 52 chr9 113519297 113519413 -10556759 - PB1D10 SINE Alu -1 116 5 3 1451 745 298 147 27 chr9 113519413 113519558 -10556614 - MLT1C LTR MaLR -282 185 7 3 1451 2038 168 58 48 chr9 113520708 113521122 -10555050 - MTD LTR MaLR -1 418 1 3 1451 478 293 40 52 chr9 113521339 113521362 -10554810 + ID_B1 SINE B4 52 222 -2 3 1451 672 238 0 20 chr9 113521362 113521512 -10554660 + B1F1 SINE Alu 1 147 -2 3 1451 397 292 65 78 chr9 113521516 113521746 -10554426 + L1ME3 LINE L1 5663 5889 -275 3 1451 412 286 47 57 chr9 113521761 113521972 -10554200 + L1ME3 LINE L1 5947 6155 -7 3 1451 2695 149 121 95 chr9 113522081 113522435 -10553737 + RMER19B LTR ERVK 1 368 -534 3 1451 8538 33 0 0 chr9 113522435 113523422 -10552750 + L1Md_T LINE L1 5596 6582 0 3 1451 2695 149 121 95 chr9 113523422 113523697 -10552475 + RMER19B LTR ERVK 369 646 -256 3 1451 805 114 16 47 chr9 113523697 113523826 -10552346 + RMER19B LTR ERVK 766 890 -12 3 1451 780 125 23 23 chr9 113523872 113524135 -10552037 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 3 1451 326 294 0 0 chr9 113524497 113524565 -10551607 - ID4_ SINE ID -12 71 4 4 1451 1495 186 133 3 chr9 113524654 113524978 -10551194 - ORR1D1 LTR MaLR -8 366 1 4 1451 213 200 0 0 chr9 113525691 113525736 -10550436 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1451 782 225 68 24 chr9 113526922 113527127 -10549045 - MTEa LTR MaLR 0 379 166 4 1451 398 301 144 40 chr9 113527259 113527297 -10548875 - MLT2B2 LTR ERVL -270 245 212 4 1451 836 284 60 4 chr9 113527297 113527566 -10548606 - B4A SINE B4 -8 284 1 4 1451 1002 181 11 28 chr9 113527567 113527749 -10548423 - MTEa LTR MaLR -200 179 1 4 1451 867 194 0 0 chr9 113528415 113528559 -10547613 - B1_Mus1 SINE Alu -3 145 2 4 1451 387 261 118 0 chr9 113529110 113529229 -10546943 + B1F SINE Alu 3 135 -14 4 1451 534 91 0 0 chr9 113529831 113529908 -10546264 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1451 2164 135 98 3 chr9 113530245 113530602 -10545570 + ORR1B1 LTR MaLR 4 394 0 4 1451 605 294 106 29 chr9 113530976 113531249 -10544923 - MLT1H LTR MaLR -245 304 11 5 1451 23 0 0 0 chr9 113531396 113531419 -10544753 + AT_rich Low_complexity Low_complexity 1 23 0 5 1451 260 217 33 0 chr9 113531491 113531551 -10544621 + B4A SINE B4 82 143 -149 5 1451 431 259 0 77 chr9 113531502 113531619 -10544553 + PB1D10 SINE Alu 10 117 0 5 1451 415 293 96 15 chr9 113531618 113531753 -10544419 + ID_B1 SINE B4 78 223 -1 5 1451 492 18 0 0 chr9 113531754 113531811 -10544361 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 5 1451 1226 80 11 0 chr9 113531812 113531987 -10544185 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 5 1451 296 133 17 0 chr9 113531988 113532048 -10544124 + (GGGA)n Simple_repeat Simple_repeat 2 62 0 5 1451 1227 29 0 0 chr9 113532466 113532604 -10543568 + B1_Mm SINE Alu 1 138 -9 5 1451 495 0 0 0 chr9 113532604 113532659 -10543513 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1451 1095 223 18 28 chr9 113532665 113532882 -10543290 + B3 SINE B2 2 216 0 6 1451 486 33 0 0 chr9 113533095 113533155 -10543017 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1451 342 0 0 0 chr9 113533155 113533192 -10542980 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1451 910 305 64 29 chr9 113533969 113534283 -10541889 - MER58B DNA MER1_type -15 326 2 6 1451 661 269 52 7 chr9 113534394 113534631 -10541541 + Lx9 LINE L1 6886 7245 -399 6 1451 1437 223 97 18 chr9 113534648 113534990 -10541182 - MTD LTR MaLR -50 369 1 6 1451 569 254 11 40 chr9 113534990 113535166 -10541006 + Lx9 LINE L1 7300 7470 -174 6 1451 222 171 0 0 chr9 113536838 113536879 -10539293 + T-rich Low_complexity Low_complexity 1 41 0 6 1451 753 194 14 7 chr9 113536900 113537045 -10539127 - B1_Mur4 SINE Alu 0 150 5 6 1451 868 222 56 14 chr9 113537074 113537289 -10538883 + ID_B1 SINE B4 1 224 0 6 1451 680 80 10 0 chr9 113537360 113537460 -10538712 + (GGGA)n Simple_repeat Simple_repeat 3 103 0 6 1451 188 200 0 0 chr9 113537501 113537536 -10538636 + L2b LINE L2 3300 3334 -41 7 1451 1122 209 19 5 chr9 113537964 113538176 -10537996 + B3 SINE B2 1 215 -1 7 1451 452 138 23 0 chr9 113539298 113539385 -10536787 + GA-rich Low_complexity Low_complexity 3 91 0 7 1451 25 0 0 0 chr9 113539386 113539411 -10536761 + AT_rich Low_complexity Low_complexity 1 25 0 7 1451 691 272 33 11 chr9 113539413 113539595 -10536577 + B4 SINE B4 85 270 -22 7 1451 567 117 0 0 chr9 113539595 113539689 -10536483 + (CA)n Simple_repeat Simple_repeat 1 94 0 7 1451 249 186 102 0 chr9 113539702 113539761 -10536411 - MER5A1 DNA MER1_type -48 118 54 7 1451 210 348 33 72 chr9 113539865 113540017 -10536155 + MIRm SINE MIR 4 149 -127 7 1451 1110 252 196 52 chr9 113540487 113541202 -10534970 - MTD-int LTR MaLR -425 1538 996 7 1451 1369 194 156 25 chr9 113541203 113541563 -10534609 - MTD LTR MaLR 0 419 13 7 1451 378 107 0 0 chr9 113542341 113542397 -10533775 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 7 1451 511 206 58 19 chr9 113543135 113543239 -10532933 + PB1D9 SINE Alu 3 110 -10 8 1451 297 0 0 0 chr9 113543239 113543272 -10532900 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 8 1451 269 358 77 26 chr9 113543368 113543523 -10532649 - L2b LINE L2 -13 3362 3200 8 1451 765 298 50 0 chr9 113543725 113543943 -10532229 + B4 SINE B4 9 237 -55 8 1451 270 210 0 46 chr9 113543950 113544015 -10532157 + B3A SINE B2 131 192 -6 8 1451 660 45 0 0 chr9 113544076 113544164 -10532008 + (CA)n Simple_repeat Simple_repeat 2 89 0 8 1451 198 0 0 0 chr9 113544693 113544715 -10531457 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 8 1451 222 236 0 0 chr9 113544798 113544853 -10531319 + GA-rich Low_complexity Low_complexity 3 57 0 8 1451 838 174 12 0 chr9 113544878 113545050 -10531122 + GA-rich Low_complexity Low_complexity 4 177 0 8 1451 690 289 70 0 chr9 113545197 113545398 -10530774 + ID_B1 SINE B4 2 216 -8 8 1451 462 204 0 81 chr9 113545565 113545688 -10530484 - MusHAL1 LINE L1 -546 2166 2054 8 1451 243 0 0 0 chr9 113546372 113546399 -10529773 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 9 1451 251 211 123 0 chr9 113546419 113546476 -10529696 - MLT2B4 LTR ERVL -492 64 1 9 1451 227 323 112 37 chr9 113547112 113547273 -10528899 + MIRb SINE MIR 63 235 -33 9 1451 322 189 71 31 chr9 113547404 113547502 -10528670 - HAL1-2a_MD LINE L1 -504 2520 2419 9 1451 744 318 22 11 chr9 113548069 113548339 -10527833 + B4A SINE B4 1 273 -19 9 1451 351 0 0 0 chr9 113548363 113548402 -10527770 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1451 743 187 0 28 chr9 113548736 113548879 -10527293 - B1_Mur1 SINE Alu 0 149 11 9 1451 233 200 0 0 chr9 113549183 113549223 -10526949 - L2b LINE L2 -8 3367 3328 9 1451 563 58 7 80 chr9 113549589 113549740 -10526432 + (GGGA)n Simple_repeat Simple_repeat 2 141 0 9 1451 288 330 56 93 chr9 113549744 113549958 -10526214 + MER90 LTR ERV1 219 424 -151 9 1451 453 19 0 0 chr9 113550413 113550467 -10525705 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 1 1451 21 0 0 0 chr9 113551001 113551022 -10525150 + AT_rich Low_complexity Low_complexity 1 21 0 1 1451 186 43 0 0 chr9 113551140 113551163 -10525009 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1451 246 309 53 0 chr9 113551427 113551521 -10524651 + MIRc SINE MIR 119 217 -51 1 1451 792 228 78 0 chr9 113551588 113551768 -10524404 + B3 SINE B2 20 213 -3 1 1451 642 267 33 70 chr9 113551791 113552093 -10524079 + B4A SINE B4 2 292 0 1 1451 254 303 19 39 chr9 113552486 113552589 -10523583 + ORR1D2 LTR MaLR 1 101 -269 1 1451 372 331 36 7 chr9 113553084 113553221 -10522951 - MIR SINE MIR -121 141 1 1 1451 1058 130 6 0 chr9 113553673 113553850 -10522322 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 1451 432 0 0 0 chr9 113554316 113554364 -10521808 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1451 247 236 0 0 chr9 113554515 113554570 -10521602 + G-rich Low_complexity Low_complexity 1 55 0 1 1451 489 271 26 26 chr9 113554986 113555141 -10521031 + RSINE1 SINE B4 6 160 -5 1 1451 250 184 0 0 chr9 113555518 113555556 -10520616 + tRNA-Val-GTG tRNA tRNA 1 38 -38 1 1451 186 43 0 0 chr9 113555700 113555723 -10520449 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1451 792 194 14 0 chr9 113555740 113555884 -10520288 - B1_Mur3 SINE Alu -2 147 2 1 1451 1539 17 0 0 chr9 113555911 113556089 -10520083 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1451 243 125 41 20 chr9 113556089 113556138 -10520034 + PB1D7 SINE Alu 68 117 -3 1 1451 776 211 78 58 chr9 113556137 113556328 -10519844 - ID_B1 SINE B4 -29 195 1 1 1451 239 311 0 0 chr9 113556364 113556425 -10519747 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 1 1451 1185 106 0 0 chr9 113556777 113557177 -10518995 + (CA)n Simple_repeat Simple_repeat 1 400 0 1 1451 701 207 20 7 chr9 113557199 113557345 -10518827 + B3A SINE B2 1 148 -50 1 1451 195 129 0 0 chr9 113557346 113557377 -10518795 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1451 345 200 92 13 chr9 113557753 113557829 -10518343 + ID4_ SINE ID 2 83 0 1 1451 270 206 0 132 chr9 113558035 113558141 -10518031 + PB1D10 SINE Alu 14 105 -12 1 1451 232 239 154 9 chr9 113558458 113558568 -10517604 + L1MC2 LINE L1 5005 5130 -1016 1 1451 1114 37 67 0 chr9 113558577 113558712 -10517460 + B1_Mus2 SINE Alu 1 144 -3 1 1451 805 36 27 9 chr9 113558712 113558824 -10517348 + (GGAAA)n Simple_repeat Simple_repeat 3 116 0 1 1451 684 210 157 11 chr9 113559095 113559273 -10516899 + B3 SINE B2 8 211 -5 1 1451 400 294 48 16 chr9 113559284 113559471 -10516701 + L1M4 LINE L1 5383 5575 -609 1 1451 861 251 201 31 chr9 113559622 113560045 -10516127 + L1MC2 LINE L1 5826 6320 -24 1 1451 272 235 279 15 chr9 113560052 113560324 -10515848 + L1MA8 LINE L1 5594 5937 -354 1 1451 21 0 0 0 chr9 113563602 113563623 -10512549 + AT_rich Low_complexity Low_complexity 1 21 0 1 1451 246 226 0 8 chr9 113564543 113564601 -10511571 + B3 SINE B2 1 55 -140 1 1451 519 95 0 0 chr9 113564602 113564676 -10511496 + (TGAG)n Simple_repeat Simple_repeat 1 74 0 1 1451 210 147 0 0 chr9 113564676 113564710 -10511462 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 1 1451 930 83 68 8 chr9 113566497 113566630 -10509542 + B1_Mus1 SINE Alu 2 142 -6 1 1451 346 300 122 55 chr9 113567903 113568300 -10507872 + Lx9 LINE L1 5772 6187 -1286 1 1451 305 184 0 50 chr9 113568324 113568404 -10507768 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 1 1451 236 246 0 0 chr9 113568409 113568470 -10507702 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1451 22 35 0 0 chr9 113570223 113570252 -10505920 + AT_rich Low_complexity Low_complexity 1 29 0 1 1451 734 278 0 0 chr9 113570298 113570460 -10505712 - RSINE1 SINE B4 0 165 4 1 1451 324 289 0 0 chr9 113570463 113570539 -10505633 + B4 SINE B4 69 144 -148 1 1451 351 161 6 3 chr9 113570484 113570555 -10505617 + B1_Mus2 SINE Alu 5 76 -73 1 1451 305 209 43 87 chr9 113571148 113571263 -10504909 + B1F SINE Alu 8 117 -32 1 1451 266 276 19 75 chr9 113571168 113571274 -10504898 + ID_B1 SINE B4 108 207 -17 1 1451 547 192 20 8 chr9 113571810 113571946 -10504226 + B1_Mur1 SINE Alu 1 141 -8 1 1451 366 262 0 0 chr9 113571951 113572073 -10504099 + GA-rich Low_complexity Low_complexity 3 124 0 1 1451 388 316 68 144 chr9 113572580 113572872 -10503300 + B4A SINE B4 1 270 -22 1 1451 207 0 0 0 chr9 113572920 113572943 -10503229 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1451 254 318 61 35 chr9 113574225 113574339 -10501833 - B1F2 SINE Alu -24 125 9 1 1451 518 218 9 26 chr9 113575036 113575149 -10501023 + RMER1B Other Other 2 112 -954 1 1451 820 299 99 59 chr9 113575171 113575909 -10500263 + RMER13A LTR ERVK 14 771 -137 1 1451 1787 129 25 0 chr9 113576024 113576303 -10499869 + RMER1A Other Other 572 857 -173 1 1451 1939 201 85 36 chr9 113576304 113576834 -10499338 + RLTR12A LTR ERVK 1 556 -12 1 1451 315 0 0 0 chr9 113576867 113576902 -10499270 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1451 582 158 8 26 chr9 113576902 113577019 -10499153 + RMER1A Other Other 911 1025 -5 1 1451 2718 201 124 39 chr9 113577034 113577550 -10498622 + Lx6 LINE L1 6759 7317 -143 1 1451 1624 130 170 14 chr9 113577550 113577909 -10498263 + RLTR9F LTR ERVK 1 415 0 1 1451 2718 201 124 39 chr9 113577909 113578039 -10498133 + Lx6 LINE L1 7318 7460 0 1 1451 230 217 0 0 chr9 113578182 113578228 -10497944 + Lx8 LINE L1 7420 7465 -8 1 1451 769 220 52 29 chr9 113578264 113578498 -10497674 - Lx7 LINE L1 -16 7680 7253 1 1451 440 202 32 11 chr9 113578506 113578601 -10497571 - B1_Mur1 SINE Alu -9 140 44 1 1451 1160 36 0 0 chr9 113578843 113578981 -10497191 + B1_Mus2 SINE Alu 2 139 -8 1 1451 27 29 0 0 chr9 113579051 113579085 -10497087 + AT_rich Low_complexity Low_complexity 1 34 0 1 1451 371 233 14 0 chr9 113579475 113579548 -10496624 + ID4_ SINE ID 4 77 -6 1 1451 236 224 0 65 chr9 113580458 113580520 -10495652 - LSU-rRNA_Hsa rRNA rRNA -790 4245 4188 1 1451 487 259 73 7 chr9 113582034 113582170 -10494002 - B1F2 SINE Alu -1 148 4 1 1451 277 312 79 44 chr9 113582246 113582360 -10493812 - B1F1 SINE Alu -26 123 6 1 1451 284 193 0 50 chr9 113582427 113582487 -10493685 + ID2 SINE ID 5 61 -22 1 1451 189 0 0 0 chr9 113582557 113582578 -10493594 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1451 788 216 4 88 chr9 113582582 113582668 -10493504 + ID_B1 SINE B4 16 224 0 1 1451 979 92 7 0 chr9 113582668 113582810 -10493362 + B1_Mus1 SINE Alu 6 148 0 1 1451 222 118 0 0 chr9 113582810 113582844 -10493328 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1451 561 233 172 0 chr9 113582949 113583112 -10493060 + ID_B1 SINE B4 2 192 -32 1 1451 864 122 56 28 chr9 113583685 113583829 -10492343 + B1_Mur4 SINE Alu 1 148 -2 1 1451 240 35 0 0 chr9 113583829 113583858 -10492314 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 1451 22 56 0 0 chr9 113584055 113584091 -10492081 + AT_rich Low_complexity Low_complexity 1 36 0 1 1451 633 169 14 40 chr9 113584159 113584307 -10491865 + B1_Mur3 SINE Alu 6 149 0 1 1451 316 280 0 0 chr9 113584399 113584474 -10491698 - ID4_ SINE ID 0 83 9 1 1451 453 321 35 24 chr9 113584870 113585039 -10491133 + ORR1E LTR MaLR 1 171 -188 1 1451 623 242 112 10 chr9 113585172 113585368 -10490804 + ID_B1 SINE B4 1 216 -8 1 1451 198 103 0 0 chr9 113585369 113585398 -10490774 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 1 1451 656 227 83 44 chr9 113585559 113585739 -10490433 + B3 SINE B2 7 193 -23 1 1451 433 213 85 0 chr9 113585852 113585946 -10490226 - RSINE1 SINE B4 -55 110 9 1 1451 340 214 74 21 chr9 113586060 113586173 -10489999 + ORR1E LTR MaLR 253 379 0 1 1451 366 288 66 18 chr9 113586219 113586385 -10489787 + ORR1E LTR MaLR 1 174 -185 1 1451 410 303 134 0 chr9 113586934 113587076 -10489096 - RSINE1 SINE B4 -1 164 4 1 1451 330 45 0 0 chr9 113587229 113587273 -10488899 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1451 231 320 120 27 chr9 113587775 113587958 -10488214 + MIR SINE MIR 46 245 -23 1 1451 508 241 90 8 chr9 113588153 113588287 -10487885 + B1F SINE Alu 3 147 -2 1 1451 437 217 60 9 chr9 113588523 113588639 -10487533 - B1F SINE Alu -22 127 6 1 1451 244 286 35 79 chr9 113588540 113588654 -10487518 - MT2B LTR ERVL -338 263 155 1 1451 810 103 102 7 chr9 113588794 113588931 -10487241 + B1_Mur4 SINE Alu 1 150 0 1 1451 309 51 0 0 chr9 113588972 113589011 -10487161 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 1 1451 26 30 0 0 chr9 113589903 113589936 -10486236 + AT_rich Low_complexity Low_complexity 1 33 0 1 1451 1850 121 3 53 chr9 113590491 113590813 -10485359 + ORR1A3 LTR MaLR 21 326 0 1 1451 862 113 0 0 chr9 113590813 113590937 -10485235 - B1_Mus2 SINE Alu -15 132 9 1 1451 378 267 47 55 chr9 113590832 113590959 -10485213 - B4 SINE B4 -88 204 79 1 1451 668 271 26 0 chr9 113590973 113591124 -10485048 - RSINE1 SINE B4 -8 157 3 1 1451 543 256 0 8 chr9 113592175 113592288 -10483884 + ID_B1 SINE B4 100 212 -12 1 1451 1301 98 54 0 chr9 113592288 113592472 -10483700 + B2_Mm2 SINE B2 2 195 0 1 1451 856 175 0 14 chr9 113592587 113592732 -10483440 + B1_Mur4 SINE Alu 2 144 -6 1 1451 321 197 0 0 chr9 113592744 113592815 -10483357 + GA-rich Low_complexity Low_complexity 1 71 0 1 1451 198 91 0 0 chr9 113593988 113594021 -10482151 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1451 349 317 34 14 chr9 113596892 113597039 -10479133 + RSINE1 SINE B4 3 152 -13 2 1451 495 247 214 22 chr9 113597160 113597338 -10478834 + B3 SINE B2 1 212 -4 2 1451 473 293 22 15 chr9 113597430 113597565 -10478607 + ID_B1 SINE B4 89 224 0 2 1451 450 237 69 41 chr9 113597922 113598067 -10478105 - B1F SINE Alu 0 149 1 2 1451 403 271 119 6 chr9 113598278 113598438 -10477734 + B3A SINE B2 12 189 -9 2 1451 348 24 0 0 chr9 113599116 113599157 -10477015 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1451 474 18 0 0 chr9 113599157 113599211 -10476961 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1451 965 232 125 12 chr9 113599211 113599451 -10476721 - B4 SINE B4 -23 269 3 2 1451 675 227 15 0 chr9 113599781 113599913 -10476259 + RSINE1 SINE B4 2 135 -30 2 1451 387 0 0 0 chr9 113599915 113599958 -10476214 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1451 367 207 0 35 chr9 113600307 113600392 -10475780 - L2a LINE L2 -9 3417 3336 2 1451 639 239 19 20 chr9 113601219 113601410 -10474762 + L1MB2 LINE L1 5534 5723 -568 2 1451 371 247 153 37 chr9 113601455 113601644 -10474528 + L1MB2 LINE L1 5835 6045 -126 2 1451 400 307 66 45 chr9 113601794 113601910 -10474262 + L1MB3 LINE L1 5980 6093 -90 2 1451 2350 124 132 0 chr9 113601910 113602282 -10473890 + MTC LTR MaLR 1 421 0 2 1451 400 307 66 45 chr9 113602282 113602363 -10473809 + L1MB3 LINE L1 6094 6181 -2 2 1451 591 215 8 8 chr9 113602743 113602865 -10473307 + ID_B1 SINE B4 96 217 -7 2 1451 1043 134 31 31 chr9 113603154 113603347 -10472825 - B2_Mm2 SINE B2 -1 194 2 2 1451 1684 16 0 25 chr9 113603894 113604092 -10472080 + B2_Mm1a SINE B2 1 193 0 2 1451 1254 121 11 0 chr9 113604124 113604306 -10471866 - B2_Mm1t SINE B2 -9 184 1 2 1451 314 256 34 23 chr9 113605694 113605870 -10470302 + (TA)n Simple_repeat Simple_repeat 1 178 0 2 1451 236 312 65 0 chr9 113605946 113606039 -10470133 - MIR SINE MIR -47 215 117 2 1451 507 256 15 37 chr9 113606975 113607109 -10469063 + RSINE1 SINE B4 4 134 -31 2 1451 397 291 17 52 chr9 113607134 113607250 -10468922 - PB1D9 SINE Alu 0 120 9 2 1451 25 51 0 0 chr9 113607258 113607297 -10468875 + AT_rich Low_complexity Low_complexity 1 39 0 2 1451 942 88 75 0 chr9 113607454 113607601 -10468571 + B2_Mm2 SINE B2 1 158 -37 2 1451 210 37 0 0 chr9 113607602 113607629 -10468543 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2 1451 1028 102 0 0 chr9 113607650 113607797 -10468375 + B1_Mus1 SINE Alu 2 148 0 2 1451 225 0 0 0 chr9 113607797 113607822 -10468350 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1451 593 212 21 28 chr9 113607977 113608118 -10468054 + B1F1 SINE Alu 2 141 -8 2 1451 1581 111 61 0 chr9 113608236 113608498 -10467674 + L1Md_F2 LINE L1 6304 6581 -1 2 1451 819 185 14 0 chr9 113608504 113608650 -10467522 + B1_Mur3 SINE Alu 2 149 0 2 1451 183 42 0 0 chr9 113608652 113608676 -10467496 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1451 462 236 118 0 chr9 113608685 113608812 -10467360 + B1_Mur2 SINE Alu 3 144 -5 2 1451 1030 195 33 28 chr9 113609215 113609426 -10466746 + B3 SINE B2 4 215 -1 2 1451 2224 151 18 39 chr9 113609457 113609842 -10466330 + ORR1C1 LTR MaLR 1 377 -1 2 1451 508 224 52 0 chr9 113610082 113610198 -10465974 + B1_Mur2 SINE Alu 2 123 -26 2 1451 238 299 68 45 chr9 113610087 113610220 -10465952 + ID_B1 SINE B4 88 223 -1 2 1451 418 276 158 27 chr9 113610662 113611083 -10465089 + L1MC4a LINE L1 6450 6957 -1038 2 1451 325 128 462 7 chr9 113611105 113611255 -10464917 + B4 SINE B4 12 229 -63 2 1451 795 239 64 0 chr9 113611260 113611448 -10464724 + B3 SINE B2 7 206 -10 2 1451 300 197 27 53 chr9 113611476 113611551 -10464621 + B4 SINE B4 220 292 0 2 1451 2558 117 36 8 chr9 113611726 113612115 -10464057 - MTB LTR MaLR 0 400 1 2 1451 305 419 8 0 chr9 113612151 113612280 -10463892 + ID_B1 SINE B4 36 165 -59 2 1451 224 261 87 0 chr9 113612218 113612287 -10463885 + B1_Mur3 SINE Alu 23 97 -52 2 1451 229 241 0 0 chr9 113612338 113612392 -10463780 + L1MC4a LINE L1 7323 7376 -666 2 1451 416 250 197 16 chr9 113612520 113612642 -10463530 + B1_Mus2 SINE Alu 2 145 -2 2 1451 207 235 0 0 chr9 113612646 113612697 -10463475 + A-rich Low_complexity Low_complexity 2 52 0 2 1451 328 193 0 0 chr9 113612701 113612758 -10463414 + L1MC4a LINE L1 7520 7576 -466 2 1451 891 242 59 2 chr9 113613091 113613349 -10462823 + ORR1D2 LTR MaLR 1 277 -82 2 1451 484 157 234 24 chr9 113613349 113613473 -10462699 - URR1A DNA MER1_type 0 226 77 2 1451 240 258 165 0 chr9 113613824 113613921 -10462251 - Cheshire DNA MER1_type 0 2420 2308 2 1451 213 273 0 0 chr9 113615423 113615478 -10460694 + RSINE1 SINE B4 1 55 -110 2 1451 1094 148 148 0 chr9 113615746 113615942 -10460230 - URR1A DNA MER1_type -1 225 1 2 1451 209 315 0 32 chr9 113616902 113616997 -10459175 + GA-rich Low_complexity Low_complexity 2 93 0 2 1451 942 129 7 7 chr9 113617543 113617691 -10458481 - B1_Mur4 SINE Alu -2 148 1 2 1451 27 87 0 0 chr9 113617725 113617794 -10458378 + AT_rich Low_complexity Low_complexity 1 69 0 2 1451 359 264 65 59 chr9 113618328 113618497 -10457675 + B3A SINE B2 5 174 -24 2 1451 546 186 44 0 chr9 113618583 113618696 -10457476 - RSINE1 SINE B4 -40 125 8 2 1451 321 169 0 0 chr9 113618810 113618869 -10457303 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 1451 1001 161 17 0 chr9 113618875 113619055 -10457117 - B3 SINE B2 -33 183 1 2 1451 25 0 0 0 chr9 113619536 113619561 -10456611 + AT_rich Low_complexity Low_complexity 1 25 0 2 1451 417 20 0 0 chr9 113619597 113619647 -10456525 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1451 289 161 18 0 chr9 113619680 113619736 -10456436 - RSINE1 SINE B4 -98 67 11 2 1451 737 295 80 60 chr9 113620234 113620787 -10455385 - RMER13A LTR ERVK -212 696 98 2 1451 345 244 12 12 chr9 113621128 113621211 -10454961 - RSINE1 SINE B4 0 165 83 2 1451 309 183 0 66 chr9 113621394 113621470 -10454702 - B1_Mur2 SINE Alu 0 149 79 2 1451 389 149 100 60 chr9 113621480 113621580 -10454592 - RMER19B LTR ERVK -404 498 395 2 1451 4248 122 93 82 chr9 113621581 113622471 -10453701 + RMER19B LTR ERVK 3 902 0 2 1451 236 257 200 0 chr9 113622471 113622541 -10453631 - B1_Mur3 SINE Alu -65 84 1 2 1451 433 292 34 20 chr9 113622541 113622637 -10453535 - B4 SINE B4 -193 99 2 2 1451 918 168 0 0 chr9 113622658 113622807 -10453365 - B1_Mur4 SINE Alu 0 150 2 2 1451 182 377 65 0 chr9 113623142 113623219 -10452953 + L2b LINE L2 3238 3319 -56 2 1451 398 311 73 7 chr9 113623311 113623447 -10452725 - MER47B DNA MER2_type -170 248 104 2 1451 266 200 247 0 chr9 113623454 113623539 -10452633 - ID_B1 SINE B4 -26 198 93 2 1451 392 369 12 18 chr9 113623868 113624031 -10452141 - RSINE1 SINE B4 0 165 4 2 1451 24 0 0 0 chr9 113624254 113624278 -10451894 + AT_rich Low_complexity Low_complexity 1 24 0 2 1451 355 310 35 0 chr9 113624317 113624430 -10451742 + PB1D10 SINE Alu 1 117 0 2 1451 297 0 0 0 chr9 113624442 113624475 -10451697 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1451 198 103 0 0 chr9 113624635 113624664 -10451508 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1451 417 208 206 44 chr9 113624897 113625033 -10451139 + RSINE1 SINE B4 4 161 -4 2 1451 234 0 0 0 chr9 113625483 113625509 -10450663 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1451 1093 78 169 0 chr9 113625618 113625784 -10450388 - B2_Mm2 SINE B2 -1 194 1 2 1451 1021 128 0 11 chr9 113625792 113625974 -10450198 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1451 404 161 0 12 chr9 113625983 113626065 -10450107 + CT-rich Low_complexity Low_complexity 3 83 0 2 1451 1040 101 11 11 chr9 113626067 113626247 -10449925 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1451 302 309 0 23 chr9 113626372 113626458 -10449714 - ID SINE ID -135 89 6 2 1451 576 292 7 0 chr9 113626681 113626825 -10449347 - RSINE1 SINE B4 -15 150 6 2 1451 261 0 0 0 chr9 113626880 113626909 -10449263 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1451 529 185 16 32 chr9 113626930 113627053 -10449119 + RMER19B LTR ERVK 309 429 -473 2 1451 3922 111 90 2 chr9 113627054 113627768 -10448404 - Lx4A LINE L1 -1009 6049 5290 2 1451 1560 57 0 5 chr9 113627768 113627962 -10448210 + B2_Mm2 SINE B2 3 195 0 2 1451 1075 82 7 7 chr9 113627962 113628109 -10448063 + B1_Mus1 SINE Alu 1 148 0 2 1451 240 35 0 0 chr9 113628113 113628142 -10448030 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1451 3922 118 186 4 chr9 113628142 113628271 -10447901 - Lx4A LINE L1 -588 5289 5069 2 1451 937 289 74 20 chr9 113628810 113629160 -10447012 - MTE2a LTR MaLR -4 375 7 2 1451 243 269 64 0 chr9 113629157 113629235 -10446937 + RSINE1 SINE B4 54 136 -29 2 1451 346 222 0 14 chr9 113629258 113629331 -10446841 + B4A SINE B4 221 292 0 2 1451 333 256 0 24 chr9 113629419 113629503 -10446669 - ID_B1 SINE B4 0 224 143 2 1451 427 224 36 29 chr9 113629515 113629653 -10446519 - L1M2 LINE L1 -813 5484 5346 2 1451 982 30 8 8 chr9 113629664 113629798 -10446374 - MTB_Mm LTR MaLR -273 134 1 2 1451 346 250 12 0 chr9 113629798 113629864 -10446308 - B3A SINE B2 -123 75 9 2 1451 273 246 80 18 chr9 113629902 113630014 -10446158 - L1M4 LINE L1 -832 5314 5196 2 1451 231 146 65 49 chr9 113630015 113630077 -10446095 - B1F SINE Alu 0 149 62 2 1451 314 283 32 11 chr9 113630114 113630207 -10445965 - RLTR42-int LTR ERVK -3738 1784 1690 2 1451 1165 93 111 0 chr9 113630274 113630446 -10445726 + B2_Mm2 SINE B2 2 192 -3 2 1451 291 190 0 65 chr9 113630679 113630741 -10445431 - RSINE1 SINE B4 0 165 108 3 1451 339 266 30 72 chr9 113630838 113630983 -10445189 + L1MDa LINE L1 1039 1184 -5356 3 1451 2279 146 16 0 chr9 113630983 113631368 -10444804 - ORR1B1 LTR MaLR -3 391 1 3 1451 339 304 42 51 chr9 113631368 113631462 -10444710 + L1MDa LINE L1 1167 1267 -5366 3 1451 1239 167 252 0 chr9 113631479 113631773 -10444399 - ORR1C2 LTR MaLR -2 382 15 3 1451 355 252 59 19 chr9 113631780 113631901 -10444271 + PB1D7 SINE Alu 8 127 -21 3 1451 297 0 0 0 chr9 113631908 113631941 -10444231 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 3 1451 642 26 0 0 chr9 113631943 113632019 -10444153 + (GGAAA)n Simple_repeat Simple_repeat 4 79 0 3 1451 21 57 0 0 chr9 113632025 113632060 -10444112 + AT_rich Low_complexity Low_complexity 1 35 0 3 1451 609 236 116 58 chr9 113632065 113632254 -10443918 + ID_B1 SINE B4 4 203 -21 3 1451 296 248 86 107 chr9 113632144 113632284 -10443888 + B1F SINE Alu 6 142 -7 3 1451 668 235 44 83 chr9 113632295 113632457 -10443715 + B3A SINE B2 2 166 -32 3 1451 656 34 15 116 chr9 113632457 113632656 -10443516 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1451 577 221 78 67 chr9 113632662 113632841 -10443331 + B3A SINE B2 2 182 -16 3 1451 668 235 44 83 chr9 113632841 113632875 -10443297 + B3A SINE B2 167 197 -1 3 1451 910 143 189 5 chr9 113632896 113633086 -10443086 + URR1B DNA MER1_type 1 225 0 3 1451 218 56 28 0 chr9 113633397 113633433 -10442739 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 3 1451 776 175 0 7 chr9 113633451 113633595 -10442577 - B1_Mus2 SINE Alu 0 147 5 3 1451 301 341 58 69 chr9 113633457 113633646 -10442526 - B4 SINE B4 -72 220 34 3 1451 371 322 7 14 chr9 113634012 113634157 -10442015 + L1MDa LINE L1 1704 1847 -4786 3 1451 240 172 0 0 chr9 113634327 113634385 -10441787 + C-rich Low_complexity Low_complexity 1 58 0 3 1451 458 231 0 95 chr9 113634386 113634534 -10441638 - B4A SINE B4 -157 135 2 3 1451 1158 50 0 0 chr9 113634696 113634835 -10441337 + B1_Mus2 SINE Alu 1 139 -8 3 1451 324 0 0 0 chr9 113634853 113634889 -10441283 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1451 351 184 39 13 chr9 113634941 113635018 -10441154 - MTEa LTR MaLR 0 379 301 3 1451 1071 94 0 0 chr9 113635036 113635174 -10440998 + B1_Mus1 SINE Alu 2 139 -9 3 1451 201 239 0 0 chr9 113635192 113635238 -10440934 + A-rich Low_complexity Low_complexity 3 48 0 3 1451 380 250 49 16 chr9 113635534 113635656 -10440516 + RMER10B LTR ERVL 270 395 -3 3 1451 207 0 0 0 chr9 113635669 113635692 -10440480 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1451 436 162 0 0 chr9 113635692 113635766 -10440406 - PB1D9 SINE Alu -9 111 38 3 1451 248 176 100 75 chr9 113635704 113635784 -10440388 - MT2B LTR ERVL -351 250 169 3 1451 271 203 41 123 chr9 113635785 113635858 -10440314 - B1F SINE Alu -16 133 67 3 1451 338 308 0 0 chr9 113635831 113635922 -10440250 - ID_B1 SINE B4 -24 200 110 3 1451 444 207 0 11 chr9 113635922 113636010 -10440162 + MTE2b LTR MaLR 2 88 -291 3 1451 570 221 91 102 chr9 113636033 113636219 -10439953 + B3 SINE B2 12 195 0 3 1451 345 294 125 7 chr9 113636275 113636419 -10439753 - MTEa LTR MaLR -164 195 35 3 1451 845 134 293 0 chr9 113636932 113637096 -10439076 + B3 SINE B2 2 213 -3 3 1451 21 0 0 0 chr9 113637100 113637121 -10439051 + AT_rich Low_complexity Low_complexity 1 21 0 3 1451 443 243 0 72 chr9 113637333 113637444 -10438728 + RSINE1 SINE B4 3 105 -60 3 1451 468 0 0 0 chr9 113637508 113637560 -10438612 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1451 804 74 0 0 chr9 113637560 113637668 -10438504 + (TG)n Simple_repeat Simple_repeat 1 108 0 3 1451 632 200 37 0 chr9 113637870 113638005 -10438167 + B3 SINE B2 2 141 -75 3 1451 402 21 0 0 chr9 113638014 113638061 -10438111 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1451 427 283 29 7 chr9 113638526 113638665 -10437507 + ID_B1 SINE B4 82 223 -1 3 1451 351 0 0 0 chr9 113638851 113638890 -10437282 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1452 360 291 40 57 chr9 113639686 113639810 -10436362 - ID_B1 SINE B4 0 224 103 3 1452 3072 80 22 5 chr9 113639823 113640236 -10435936 + L1_Mus1 LINE L1 6148 6567 0 3 1452 528 221 86 22 chr9 113640272 113640411 -10435761 - B1F2 SINE Alu 0 149 2 3 1452 245 258 75 11 chr9 113641083 113641177 -10434995 + PB1D10 SINE Alu 15 114 -3 3 1452 408 239 33 0 chr9 113641479 113641571 -10434601 + B1F1 SINE Alu 1 95 -54 3 1452 195 100 0 0 chr9 113641572 113641602 -10434570 + (CCCCCA)n Simple_repeat Simple_repeat 3 32 0 3 1452 297 0 0 77 chr9 113641609 113641661 -10434511 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 3 1452 290 248 179 9 chr9 113641757 113641863 -10434309 - B4A SINE B4 -18 274 151 3 1452 325 325 104 44 chr9 113642139 113642477 -10433695 - MLT2B4 LTR ERVL -181 375 18 3 1452 891 247 55 69 chr9 113642573 113642864 -10433308 - B4A SINE B4 -5 287 1 3 1452 655 210 0 0 chr9 113642966 113643090 -10433082 - B1_Mur2 SINE Alu -5 144 21 3 1452 216 0 0 0 chr9 113643227 113643251 -10432921 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 1452 256 281 97 0 chr9 113643251 113643344 -10432828 - B1F1 SINE Alu -8 109 5 3 1452 920 97 15 0 chr9 113643370 113643504 -10432668 + B1_Mus1 SINE Alu 1 136 -12 3 1452 188 34 0 33 chr9 113643504 113643534 -10432638 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3 1452 272 215 77 0 chr9 113643544 113643609 -10432563 - B1F1 SINE Alu -78 71 2 3 1452 243 0 0 0 chr9 113644164 113644191 -10431981 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 3 1452 712 153 81 0 chr9 113644225 113644304 -10431868 - B1_Mus2 SINE Alu -5 142 54 3 1452 1403 90 16 0 chr9 113644304 113644493 -10431679 - B2_Mm2 SINE B2 -3 192 1 3 1452 712 153 81 0 chr9 113644493 113644537 -10431635 - B1_Mus2 SINE Alu -94 53 10 3 1452 685 78 13 8 chr9 113644563 113644682 -10431490 + B1_Mus1 SINE Alu 1 117 -3 3 1452 428 246 57 21 chr9 113644841 113644982 -10431190 - B1F SINE Alu -3 146 1 3 1452 312 27 0 0 chr9 113645071 113645108 -10431064 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1452 1701 158 173 18 chr9 113645136 113645477 -10430695 + RMER1B Other Other 368 761 -305 3 1452 333 292 0 54 chr9 113645830 113645942 -10430230 - PB1D10 SINE Alu 0 117 12 3 1452 255 340 10 20 chr9 113645856 113645955 -10430217 - ID_B1 SINE B4 -48 176 79 3 1452 1290 160 5 5 chr9 113646039 113646246 -10429926 - B3 SINE B2 -9 207 1 3 1452 3678 149 35 7 chr9 113646270 113646876 -10429296 - Lx4B LINE L1 -4 7054 6432 3 1452 334 350 54 5 chr9 113647218 113647402 -10428770 - MLT1F LTR MaLR 0 548 356 3 1452 1255 21 14 0 chr9 113647517 113647662 -10428510 + B1_Mus2 SINE Alu 1 147 0 3 1452 192 97 0 0 chr9 113647662 113647693 -10428479 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1452 872 237 35 10 chr9 113648747 113648947 -10427225 - B3 SINE B2 -11 205 1 3 1452 372 201 149 0 chr9 113648947 113649044 -10427128 - PB1D10 SINE Alu 0 127 10 3 1452 671 222 17 35 chr9 113649136 113649309 -10426863 - B3 SINE B2 -6 210 41 3 1452 909 192 52 26 chr9 113649742 113649934 -10426238 + B3A SINE B2 2 198 0 3 1452 237 284 94 10 chr9 113649992 113650088 -10426084 + ID_B1 SINE B4 118 221 -3 3 1452 200 204 0 20 chr9 113650990 113651040 -10425132 + (CGGG)n Simple_repeat Simple_repeat 1 49 0 3 1452 220 262 28 7 chr9 113651296 113651438 -10424734 + CT-rich Low_complexity Low_complexity 2 146 0 3 1452 269 199 0 3 chr9 113652254 113652310 -10423862 + B1F SINE Alu 61 144 -5 3 1452 223 364 92 5 chr9 113652721 113652917 -10423255 + L2 LINE L2 1507 1719 -1700 3 1452 599 229 0 83 chr9 113653032 113653192 -10422980 - B1_Mur1 SINE Alu -7 142 1 3 1452 21 36 0 0 chr9 113653192 113653220 -10422952 + AT_rich Low_complexity Low_complexity 1 28 0 3 1452 1002 193 39 15 chr9 113653221 113653426 -10422746 - B3 SINE B2 -5 211 2 3 1452 347 152 21 32 chr9 113653707 113653802 -10422370 + CT-rich Low_complexity Low_complexity 3 96 0 3 1452 466 141 114 57 chr9 113653802 113653823 -10422349 - PB1D9 SINE Alu 0 120 105 3 1452 1248 224 87 36 chr9 113653823 113653923 -10422249 + ORR1D1 LTR MaLR 1 96 -278 3 1452 234 0 0 0 chr9 113653923 113653949 -10422223 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1452 1248 224 87 36 chr9 113653949 113654204 -10421968 + ORR1D1 LTR MaLR 97 373 -1 3 1452 466 141 114 57 chr9 113654204 113654287 -10421885 - PB1D9 SINE Alu -16 104 10 3 1452 274 51 0 0 chr9 113654960 113654999 -10421173 - B1_Mm SINE Alu 0 147 109 3 1452 3690 135 78 81 chr9 113655011 113655769 -10420403 - RMER6A LTR ERVK 0 756 1 3 1452 545 260 80 80 chr9 113655867 113656030 -10420142 - RSINE1 SINE B4 0 165 3 3 1452 388 222 136 18 chr9 113656150 113656260 -10419912 - RSINE1 SINE B4 -33 132 10 3 1452 261 323 123 58 chr9 113656693 113656831 -10419341 - MER2 DNA MER2_type -2 343 197 3 1452 402 286 80 76 chr9 113657098 113657374 -10418798 + B4 SINE B4 2 278 -14 3 1452 725 212 7 7 chr9 113657624 113657771 -10418401 - B1_Mur2 SINE Alu -2 147 1 3 1452 1057 210 39 0 chr9 113657816 113658021 -10418151 - B3 SINE B2 -3 213 1 3 1452 322 316 194 27 chr9 113658032 113658325 -10417847 + L2 LINE L2 1167 1508 -1911 3 1452 5252 175 67 78 chr9 113658660 113659996 -10416176 - RMER12 LTR ERVK 0 1322 1 3 1452 240 100 0 0 chr9 113660006 113660046 -10416126 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1452 1187 55 14 0 chr9 113660047 113660193 -10415979 - B1_Mus1 SINE Alu 0 148 1 3 1452 266 311 29 73 chr9 113660244 113660321 -10415851 - B3A SINE B2 0 198 3 3 1452 608 227 16 0 chr9 113660321 113660449 -10415723 - RSINE1 SINE B4 -32 133 4 4 1452 24 24 0 24 chr9 113660676 113660697 -10415475 + AT_rich Low_complexity Low_complexity 1 21 0 4 1452 279 305 9 71 chr9 113660697 113660810 -10415362 - PB1D10 SINE Alu -11 106 1 4 1452 24 24 0 24 chr9 113660810 113660830 -10415342 + AT_rich Low_complexity Low_complexity 1 20 0 4 1452 500 245 93 26 chr9 113660832 113660983 -10415189 - RSINE1 SINE B4 -2 163 3 4 1452 239 292 96 18 chr9 113661319 113661561 -10414611 - L1MD LINE L1 -1126 5020 4762 4 1452 696 219 77 27 chr9 113661579 113661762 -10414410 - B3 SINE B2 -10 206 15 4 1452 319 262 111 60 chr9 113661762 113661961 -10414211 - L1M4 LINE L1 -1367 4779 4571 4 1452 276 155 78 78 chr9 113662031 113662108 -10414064 - MTEa LTR MaLR 0 379 303 4 1452 329 103 0 33 chr9 113662206 113662266 -10413906 + (GGGAGA)n Simple_repeat Simple_repeat 4 61 0 4 1452 320 272 54 0 chr9 113662479 113662571 -10413601 - PB1D7 SINE Alu -1 119 23 4 1452 427 184 174 53 chr9 113662600 113662732 -10413440 - B1_Mur2 SINE Alu 0 149 2 4 1452 383 310 95 34 chr9 113662945 113663092 -10413080 - ID_B1 SINE B4 -67 157 2 4 1452 1608 152 80 147 chr9 113663148 113663361 -10412811 + MTD LTR MaLR 1 196 -223 4 1452 351 0 0 0 chr9 113663361 113663400 -10412772 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1452 1608 152 80 147 chr9 113663400 113663634 -10412538 + MTD LTR MaLR 197 418 -1 4 1452 360 307 34 41 chr9 113663701 113663847 -10412325 - RSINE1 SINE B4 -18 147 3 4 1452 1196 74 0 0 chr9 113663886 113664034 -10412138 + B1_Mus1 SINE Alu 1 148 0 4 1452 1646 32 0 0 chr9 113664085 113664273 -10411899 + B2_Mm1a SINE B2 1 188 -5 4 1452 21 36 0 0 chr9 113664315 113664343 -10411829 + AT_rich Low_complexity Low_complexity 1 28 0 4 1452 329 196 11 18 chr9 113664352 113664439 -10411733 - B1_Mur1 SINE Alu -1 148 37 4 1452 268 167 0 0 chr9 113664439 113664487 -10411685 - L1MCc LINE L1 -4890 1533 1486 4 1452 564 205 0 99 chr9 113664509 113664650 -10411522 + B1_Mus1 SINE Alu 10 136 -12 4 1452 296 48 24 0 chr9 113664652 113664694 -10411478 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 4 1452 259 326 47 0 chr9 113664735 113664821 -10411351 - ID_B1 SINE B4 -128 96 7 4 1452 353 255 129 40 chr9 113664958 113665236 -10410936 - L1MCc LINE L1 -4961 1462 1160 4 1452 3738 112 60 16 chr9 113665466 113666046 -10410126 + SSU-rRNA_Hsa rRNA rRNA 10 615 -1254 4 1452 216 0 0 0 chr9 113666545 113666569 -10409603 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 4 1452 336 155 0 0 chr9 113666612 113666683 -10409489 + A-rich Low_complexity Low_complexity 1 71 0 4 1452 471 235 10 0 chr9 113666877 113666979 -10409193 + RMER17A-int LTR ERVK 982 1084 -644 4 1452 1083 211 105 62 chr9 113667089 113667412 -10408760 + RMER17A-int LTR ERVK 1084 1420 -308 4 1452 207 0 0 0 chr9 113667582 113667605 -10408567 + (CACCC)n Simple_repeat Simple_repeat 1 23 0 4 1452 288 246 0 16 chr9 113667606 113667668 -10408504 + MERVK26-int LTR ERVK 6858 6918 -1 4 1452 2034 245 115 88 chr9 113667686 113668475 -10407697 + RMER13A LTR ERVK 43 847 -13 4 1452 872 177 45 11 chr9 113668915 113669092 -10407080 + B3 SINE B2 34 216 0 4 1452 1163 183 81 9 chr9 113669295 113669505 -10406667 + URR1B DNA MER1_type 1 225 0 4 1452 311 299 28 85 chr9 113669620 113669747 -10406425 - L1MC4 LINE L1 -8 8034 7917 4 1452 2399 146 78 16 chr9 113669747 113670130 -10406042 - MTB_Mm LTR MaLR 0 407 1 4 1452 311 299 28 85 chr9 113670130 113670214 -10405958 - L1MC4 LINE L1 -126 7916 7835 4 1452 30 27 0 0 chr9 113670217 113670254 -10405918 + AT_rich Low_complexity Low_complexity 1 37 0 4 1452 274 239 18 0 chr9 113670276 113670389 -10405783 + (TA)n Simple_repeat Simple_repeat 1 115 0 4 1452 243 0 0 0 chr9 113670406 113670433 -10405739 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1452 808 206 0 7 chr9 113670452 113670594 -10405578 - B1_Mur1 SINE Alu -8 141 1 4 1452 809 246 15 44 chr9 113670889 113671093 -10405079 + B3A SINE B2 1 198 0 4 1452 24 0 0 0 chr9 113671100 113671124 -10405048 + AT_rich Low_complexity Low_complexity 1 24 0 4 1452 854 169 7 20 chr9 113671357 113671508 -10404664 - B1_Mur1 SINE Alu 0 149 1 4 1452 212 0 36 0 chr9 113671521 113671549 -10404623 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1452 338 0 24 0 chr9 113672359 113672401 -10403771 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 4 1452 273 258 30 0 chr9 113672407 113672473 -10403699 - B1F1 SINE Alu -17 132 65 4 1452 286 304 14 0 chr9 113672448 113672517 -10403655 - ID_B1 SINE B4 -28 196 127 4 1452 195 42 0 0 chr9 113672548 113672572 -10403600 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 4 1452 1458 79 11 0 chr9 113672572 113672762 -10403410 - B2_Mm1t SINE B2 -1 192 1 4 1452 358 284 12 86 chr9 113672800 113672962 -10403210 - RLTR15 LTR ERVK -25 334 185 4 1452 265 297 80 98 chr9 113673644 113673672 -10402500 - ID_B1 SINE B4 -25 199 166 4 1452 3214 50 36 5 chr9 113673672 113674056 -10402116 - MTA_Mm LTR MaLR 0 396 1 4 1452 265 297 80 98 chr9 113674056 113674139 -10402033 - ID_B1 SINE B4 -59 165 91 4 1452 207 0 0 0 chr9 113674267 113674290 -10401882 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1452 1281 55 0 0 chr9 113674395 113674541 -10401631 + B1_Mus1 SINE Alu 3 148 0 4 1452 284 254 14 14 chr9 113674689 113674761 -10401411 - ID4_ SINE ID -9 74 3 4 1452 1057 195 100 0 chr9 113674802 113674992 -10401180 - B3 SINE B2 -7 209 1 4 1452 494 239 35 0 chr9 113675022 113675135 -10401037 - PB1D10 SINE Alu 0 117 1 4 1452 776 293 77 73 chr9 113676224 113676277 -10399895 + B4 SINE B4 31 77 -215 4 1452 357 24 0 0 chr9 113676277 113676319 -10399853 + (TCCC)n Simple_repeat Simple_repeat 2 43 0 4 1452 270 0 0 0 chr9 113676319 113676348 -10399824 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 4 1452 776 293 77 73 chr9 113676348 113676554 -10399618 + B4 SINE B4 78 291 -1 4 1452 294 244 34 34 chr9 113676619 113676708 -10399464 - MLT1A1 LTR MaLR 0 408 320 4 1452 705 194 70 21 chr9 113676844 113676986 -10399186 - B1_Mur4 SINE Alu -1 149 1 4 1452 1261 61 0 0 chr9 113677018 113677165 -10399007 + B1_Mus2 SINE Alu 1 147 0 4 1452 245 105 0 50 chr9 113677165 113677225 -10398947 + A-rich Low_complexity Low_complexity 1 57 0 4 1452 616 229 188 77 chr9 113677250 113677420 -10398752 - B3A SINE B2 -8 190 2 4 1452 231 114 0 0 chr9 113677850 113677885 -10398287 + (TATG)n Simple_repeat Simple_repeat 1 35 0 4 1452 276 311 0 26 chr9 113677885 113677961 -10398211 - ID4 SINE ID -7 76 3 4 1452 1474 70 5 5 chr9 113677971 113678157 -10398015 - B2_Mm1t SINE B2 -6 187 2 4 1452 410 286 34 59 chr9 113678180 113678299 -10397873 + RSINE1 SINE B4 43 158 -7 4 1452 399 21 0 0 chr9 113678321 113678369 -10397803 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1452 1546 145 69 4 chr9 113680239 113680515 -10395657 + MTC LTR MaLR 1 294 -127 4 1452 836 141 35 0 chr9 113680665 113680807 -10395365 + B1_Mus1 SINE Alu 2 148 0 4 1452 254 254 0 31 chr9 113681151 113681216 -10394956 - AluG_3 SINE Alu -93 218 156 4 1452 318 320 8 47 chr9 113681672 113681800 -10394372 - PB1 SINE Alu 0 127 5 4 1452 804 272 130 48 chr9 113681894 113682366 -10393806 - L1MB3 LINE L1 -20 6163 5652 4 1452 21 0 0 0 chr9 113682902 113682923 -10393249 + AT_rich Low_complexity Low_complexity 1 21 0 4 1452 561 169 32 56 chr9 113682972 113683097 -10393075 + B1_Mur1 SINE Alu 1 122 -27 4 1452 607 227 112 15 chr9 113683244 113683441 -10392731 - L1MC LINE L1 -1909 4237 4022 4 1452 484 138 159 11 chr9 113683445 113683533 -10392639 + PB1D9 SINE Alu 9 109 -11 4 1452 334 0 21 21 chr9 113683533 113683580 -10392592 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1452 230 128 0 0 chr9 113683580 113683619 -10392553 - L1MC LINE L1 -2109 4037 3999 4 1452 2263 198 52 114 chr9 113683737 113684448 -10391724 - RMER1B Other Other 0 1066 400 4 1452 1499 226 100 51 chr9 113684517 113684953 -10391219 - RMER1B Other Other -578 488 46 4 1452 180 0 0 0 chr9 113685051 113685071 -10391101 + (C)n Simple_repeat Simple_repeat 1 20 0 4 1452 23 0 0 0 chr9 113685299 113685322 -10390850 + AT_rich Low_complexity Low_complexity 1 23 0 4 1452 286 143 55 0 chr9 113685888 113685979 -10390193 + (TA)n Simple_repeat Simple_repeat 1 96 0 4 1452 218 273 0 0 chr9 113685989 113686033 -10390139 - B1F1 SINE Alu -98 51 8 4 1452 381 272 111 85 chr9 113686119 113686308 -10389864 - B3A SINE B2 -4 194 1 4 1452 435 272 44 50 chr9 113686917 113687099 -10389073 - L1MA4 LINE L1 -1546 5927 5747 4 1452 314 286 22 8 chr9 113687111 113687245 -10388927 + (TA)n Simple_repeat Simple_repeat 2 137 0 4 1452 365 262 65 1 chr9 113687245 113687461 -10388711 - L1MA4 LINE L1 -1677 5796 5522 4 1452 1160 102 0 0 chr9 113687562 113687709 -10388463 + B1_Mus1 SINE Alu 2 148 0 4 1452 207 0 0 0 chr9 113687729 113687752 -10388420 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1452 252 160 107 0 chr9 113688203 113688334 -10387838 + (CATAG)n Simple_repeat Simple_repeat 4 148 0 4 1452 25 0 0 0 chr9 113688425 113688450 -10387722 + AT_rich Low_complexity Low_complexity 1 25 0 4 1452 5288 218 49 78 chr9 113688554 113689003 -10387169 + Lx9 LINE L1 4224 4643 -1204 4 1452 275 49 24 0 chr9 113689003 113689044 -10387128 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1452 5288 218 49 78 chr9 113689044 113689215 -10386957 + Lx9 LINE L1 4644 4813 -1034 4 1452 1234 68 0 0 chr9 113689215 113689362 -10386810 + B1_Mus2 SINE Alu 1 147 0 4 1452 5288 218 49 78 chr9 113689362 113689677 -10386495 + Lx9 LINE L1 4814 5116 -731 4 1452 1077 82 220 0 chr9 113689677 113689836 -10386336 + B2_Mm2 SINE B2 1 194 -1 4 1452 5288 220 54 71 chr9 113689836 113690736 -10385436 + Lx9 LINE L1 5117 6042 -1602 4 1452 3898 186 41 24 chr9 113690829 113691585 -10384587 + Lx9 LINE L1 6404 7172 -472 4 1452 551 274 206 74 chr9 113691589 113692074 -10384098 + L1MB8 LINE L1 5570 6118 -60 4 1452 330 291 13 0 chr9 113692085 113692164 -10384008 - ID4_ SINE ID 0 83 4 4 1452 575 248 24 0 chr9 113692528 113692653 -10383519 + B1_Mur1 SINE Alu 21 148 -1 4 1452 229 324 131 21 chr9 113693140 113693163 -10383009 - B4A SINE B4 -46 246 86 4 1452 294 243 33 123 chr9 113693163 113693285 -10382887 - B1F SINE Alu -37 112 1 4 1452 195 42 0 0 chr9 113693734 113693758 -10382414 + (TCCCC)n Simple_repeat Simple_repeat 3 26 0 5 1452 577 177 128 0 chr9 113693758 113693899 -10382273 - RMER1C Other Other -12 1330 1172 5 1452 876 122 48 48 chr9 113694929 113695064 -10381108 + B1_Mus1 SINE Alu 2 139 -9 5 1452 290 45 0 22 chr9 113695064 113695109 -10381063 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 1452 324 182 233 39 chr9 113696865 113696968 -10379204 + MER2 DNA MER2_type 223 345 0 5 1452 2900 135 21 36 chr9 113696978 113697221 -10378951 - RMER6B LTR ERVK 0 461 216 5 1452 1413 77 55 0 chr9 113697221 113697403 -10378769 - B2_Mm2 SINE B2 -2 193 2 5 1452 2900 135 21 36 chr9 113697403 113697627 -10378545 - RMER6B LTR ERVK -246 215 1 5 1452 236 329 29 0 chr9 113698312 113698382 -10377790 - ID4_ SINE ID -10 73 2 5 1452 690 204 125 16 chr9 113698408 113698592 -10377580 - B3 SINE B2 -6 210 7 5 1452 646 230 51 139 chr9 113698782 113699019 -10377153 + B3 SINE B2 1 216 0 5 1452 226 182 0 43 chr9 113699064 113699110 -10377062 + C-rich Low_complexity Low_complexity 3 46 0 5 1452 27 29 0 0 chr9 113699651 113699685 -10376487 + AT_rich Low_complexity Low_complexity 1 34 0 5 1452 191 363 106 25 chr9 113700557 113700718 -10375454 - L2b LINE L2 -228 3147 2974 5 1452 280 266 56 66 chr9 113703157 113703328 -10372844 - MIRc SINE MIR -19 249 83 5 1452 198 71 0 0 chr9 113705085 113705113 -10371059 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1452 589 291 92 63 chr9 113705167 113705438 -10370734 - B4A SINE B4 -13 279 1 5 1452 27 62 0 0 chr9 113705844 113705892 -10370280 + AT_rich Low_complexity Low_complexity 1 48 0 5 1452 611 212 102 0 chr9 113705909 113706027 -10370145 + B1_Mur1 SINE Alu 3 132 -17 5 1452 189 0 0 0 chr9 113706561 113706582 -10369590 + (CAGC)n Simple_repeat Simple_repeat 2 22 0 5 1452 1051 91 7 0 chr9 113707008 113707151 -10369021 - B1_Mus2 SINE Alu -1 146 3 5 1452 616 285 124 66 chr9 113707284 113707558 -10368614 - B4A SINE B4 -2 290 1 5 1452 356 256 12 0 chr9 113708091 113708173 -10367999 + PB1D7 SINE Alu 25 107 -13 5 1452 426 252 29 39 chr9 113708635 113708738 -10367434 - ID_B1 SINE B4 -38 186 85 5 1452 507 163 43 0 chr9 113708861 113708953 -10367219 + ORR1D1 LTR MaLR 1 96 -278 5 1452 221 356 122 29 chr9 113709296 113709806 -10366366 - L2 LINE L2 -724 2695 2139 5 1452 277 365 10 0 chr9 113710409 113710505 -10365667 + ID_B1 SINE B4 80 176 -48 5 1452 277 347 31 0 chr9 113710424 113710522 -10365650 + PB1D9 SINE Alu 15 115 -5 5 1452 333 0 0 0 chr9 113711075 113711112 -10365060 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1452 1007 198 25 30 chr9 113711119 113711322 -10364850 - B3 SINE B2 -14 202 1 5 1452 214 150 50 0 chr9 113711949 113711989 -10364183 + B1_Mus2 SINE Alu 86 127 -20 5 1452 207 0 0 0 chr9 113712138 113712161 -10364011 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 5 1452 288 0 0 0 chr9 113712369 113712401 -10363771 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1452 450 0 0 0 chr9 113712401 113712450 -10363722 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1452 23 54 0 0 chr9 113712485 113712522 -10363650 + AT_rich Low_complexity Low_complexity 1 37 0 5 1452 300 119 0 0 chr9 113713669 113713728 -10362444 + (T)n Simple_repeat Simple_repeat 1 59 0 5 1452 225 315 118 46 chr9 113713750 113713903 -10362269 - LTR81B LTR ERV1? -251 1142 979 5 1452 260 299 29 29 chr9 113713913 113713982 -10362190 - B4A SINE B4 -174 118 50 5 1452 1236 36 0 0 chr9 113713982 113714119 -10362053 + B1_Mus2 SINE Alu 2 138 -9 5 1452 189 292 46 0 chr9 113714567 113714632 -10361540 - L2a LINE L2 -73 3353 3286 5 1452 301 280 62 39 chr9 113714898 113715028 -10361144 - BC1_Mm scRNA scRNA -18 134 2 5 1452 227 315 10 52 chr9 113715028 113715125 -10361047 - L1M5 LINE L1 -3649 2497 2405 5 1452 25 0 0 0 chr9 113715384 113715409 -10360763 + AT_rich Low_complexity Low_complexity 1 25 0 5 1452 679 289 38 3 chr9 113715448 113715656 -10360516 - B3A SINE B2 0 216 2 5 1452 1201 220 9 0 chr9 113715685 113715899 -10360273 - B3 SINE B2 0 216 1 5 1452 1217 62 0 0 chr9 113715914 113716058 -10360114 - B1_Mus1 SINE Alu 0 148 5 5 1452 9555 78 25 30 chr9 113716144 113717877 -10358295 - Lx3_Mus LINE L1 0 7009 5292 5 1452 7151 73 34 41 chr9 113717871 113718923 -10357249 + Lx3_Mus LINE L1 4234 5278 -608 5 1452 21 57 0 0 chr9 113719130 113719165 -10357007 + AT_rich Low_complexity Low_complexity 1 35 0 5 1452 393 291 49 86 chr9 113719334 113719496 -10356676 + MER58A DNA MER1_type 69 224 0 5 1452 321 247 51 13 chr9 113719613 113719691 -10356481 + RSINE1 SINE B4 2 82 -83 5 1452 211 288 45 0 chr9 113719759 113719825 -10356347 - MER5A DNA MER1_type -120 69 1 5 1452 207 0 0 0 chr9 113720695 113720718 -10355454 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1452 22 56 0 0 chr9 113722157 113722193 -10353979 + AT_rich Low_complexity Low_complexity 1 36 0 5 1452 314 95 32 0 chr9 113723399 113723462 -10352710 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 5 1452 620 234 16 0 chr9 113723463 113723587 -10352585 - B1_Mur1 SINE Alu -13 136 11 5 1452 222 227 0 0 chr9 113724151 113724195 -10351977 + CT-rich Low_complexity Low_complexity 1 44 0 5 1452 26 50 0 0 chr9 113724764 113724804 -10351368 + AT_rich Low_complexity Low_complexity 1 40 0 5 1452 225 0 0 0 chr9 113724930 113724955 -10351217 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 5 1452 324 277 43 0 chr9 113725775 113725869 -10350303 - ID_B1 SINE B4 0 224 127 5 1452 587 51 0 12 chr9 113726343 113726423 -10349749 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 5 1452 277 288 105 48 chr9 113726425 113726549 -10349623 - B2_Mm1t SINE B2 -24 169 39 5 1452 5318 147 108 47 chr9 113726612 113726975 -10349197 - RMER12 LTR ERVK -137 1185 745 5 1452 423 0 0 0 chr9 113726975 113727022 -10349150 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1452 5318 147 108 47 chr9 113727022 113727774 -10348398 - RMER12 LTR ERVK -578 744 1 5 1452 458 224 93 0 chr9 113727774 113727860 -10348312 - B3 SINE B2 -119 97 2 5 1452 352 276 317 6 chr9 113728043 113728207 -10347965 + ID_B1 SINE B4 5 219 -5 5 1452 252 0 0 0 chr9 113728756 113728784 -10347388 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 5 1452 729 260 63 14 chr9 113729022 113729229 -10346943 - ID_B1 SINE B4 -7 217 1 5 1452 477 286 109 24 chr9 113729733 113729898 -10346274 + B3A SINE B2 1 179 -19 5 1452 342 216 0 13 chr9 113730108 113730183 -10345989 - MLT1A1 LTR MaLR -2 406 333 5 1452 1190 48 0 0 chr9 113730214 113730359 -10345813 - B1_Mus2 SINE Alu -2 145 1 5 1452 249 57 0 0 chr9 113731887 113731922 -10344250 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1452 455 214 132 18 chr9 113731922 113732047 -10344125 - B1_Mur1 SINE Alu -7 142 6 5 1452 381 268 71 14 chr9 113732170 113732310 -10343862 - B1F2 SINE Alu -1 148 1 5 1452 252 307 27 167 chr9 113732325 113732583 -10343589 + MLT1A1 LTR MaLR 1 222 -186 5 1452 1299 215 144 17 chr9 113732988 113733348 -10342824 - MTC LTR MaLR -14 407 2 5 1452 3557 90 26 0 chr9 113733470 113734014 -10342158 - MusHAL1 LINE L1 -621 2091 1534 5 1452 798 31 0 0 chr9 113734033 113734130 -10342042 + (TCCCC)n Simple_repeat Simple_repeat 4 100 0 5 1452 775 152 20 52 chr9 113734133 113734286 -10341886 - B1_Mur3 SINE Alu 0 149 2 5 1452 4033 222 77 62 chr9 113734431 113735615 -10340557 - Lx7 LINE L1 -45 7651 6451 5 1452 548 99 169 110 chr9 113735615 113735662 -10340510 - URR1A DNA MER1_type 0 226 158 5 1452 246 62 0 0 chr9 113735662 113735694 -10340478 + (CCTAA)n Simple_repeat Simple_repeat 1 32 0 5 1452 548 99 169 110 chr9 113735694 113735782 -10340390 - URR1A DNA MER1_type -69 157 84 5 1452 3323 199 98 15 chr9 113735810 113736602 -10339570 - Lx7 LINE L1 -1237 6459 5602 5 1452 1055 193 27 156 chr9 113736603 113736640 -10339532 - ORR1C2 LTR MaLR 0 384 354 5 1452 1698 170 56 31 chr9 113736640 113736998 -10339174 - ORR1B2 LTR MaLR 0 367 1 5 1452 1055 200 37 139 chr9 113736998 113737307 -10338865 - ORR1C2 LTR MaLR -31 353 123 5 1452 1583 51 0 0 chr9 113737531 113737728 -10338444 - L1Md_T LINE L1 0 6582 6386 5 1452 557 292 69 16 chr9 113737841 113738029 -10338143 - MTEa LTR MaLR -4 375 178 5 1452 1056 138 41 0 chr9 113738031 113738227 -10337945 - RMER4B LTR ERVK 0 585 382 5 1452 635 164 7 101 chr9 113738224 113738373 -10337799 - RMER4B LTR ERVK -450 135 1 5 1452 1511 155 44 19 chr9 113738373 113738688 -10337484 - MurERV4-int LTR ERVK 0 5260 4938 5 1452 4680 168 22 34 chr9 113738696 113739613 -10336559 - MurERV4-int LTR ERVK -3828 1432 527 5 1452 1163 156 40 0 chr9 113739591 113739815 -10336357 - MurERV4-int LTR ERVK -4948 312 80 5 1452 2611 159 131 11 chr9 113739815 113740336 -10335836 - RLTR17 LTR ERVK 0 692 110 5 1452 3660 62 33 10 chr9 113740422 113740909 -10335263 - L1Md_F2 LINE L1 0 6582 6085 5 1452 2884 44 31 0 chr9 113740909 113741293 -10334879 + L1Md_F2 LINE L1 5695 6090 -492 5 1452 2029 184 91 31 chr9 113741360 113741810 -10334362 - RMER4B LTR ERVK 0 585 109 5 1452 418 288 131 30 chr9 113741855 113742023 -10334149 - MTEa LTR MaLR -194 185 1 5 1452 214 69 0 0 chr9 113742137 113742166 -10334006 + B3A SINE B2 2 30 -168 5 1452 909 50 141 0 chr9 113742178 113742299 -10333873 + B1_Mm SINE Alu 2 139 -8 5 1452 28 0 0 0 chr9 113742302 113742330 -10333842 + AT_rich Low_complexity Low_complexity 1 28 0 5 1452 508 311 65 47 chr9 113742330 113742499 -10333673 + B3A SINE B2 27 198 0 5 1452 1318 106 16 0 chr9 113743511 113743699 -10332473 + B2_Mm2 SINE B2 2 192 -3 5 1452 346 274 27 36 chr9 113743892 113744002 -10332170 - PB1D10 SINE Alu -7 110 2 5 1452 348 285 55 31 chr9 113744459 113744586 -10331586 + RSINE1 SINE B4 1 130 -35 5 1452 657 178 72 22 chr9 113745076 113745214 -10330958 + B1_Mur4 SINE Alu 1 145 -5 5 1452 526 182 36 129 chr9 113745685 113745824 -10330348 - B1_Mur3 SINE Alu -7 142 17 5 1452 227 291 64 85 chr9 113745883 113745977 -10330195 - 4.5SRNA scRNA scRNA -2 92 1 5 1452 386 232 51 31 chr9 113745893 113745991 -10330181 - ID_B1 SINE B4 -56 168 69 5 1452 333 68 0 0 chr9 113746153 113746197 -10329975 + (TTTCC)n Simple_repeat Simple_repeat 4 47 0 5 1452 228 67 0 0 chr9 113746231 113746261 -10329911 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 6 1452 21 36 0 0 chr9 113747043 113747071 -10329101 + AT_rich Low_complexity Low_complexity 1 28 0 6 1452 2273 242 155 97 chr9 113747071 113747627 -10328545 - Lx9 LINE L1 -8 7636 7036 6 1452 954 195 69 10 chr9 113747627 113747829 -10328343 - B3 SINE B2 -2 214 1 6 1452 2273 242 155 97 chr9 113747829 113748477 -10327695 - Lx9 LINE L1 -609 7035 6362 6 1452 297 0 0 0 chr9 113748759 113748792 -10327380 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1452 1007 221 14 5 chr9 113749093 113749302 -10326870 + B3 SINE B2 1 211 -5 6 1452 513 0 0 0 chr9 113749318 113749375 -10326797 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1452 279 0 0 0 chr9 113749375 113749405 -10326767 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1452 330 344 166 18 chr9 113749618 113749955 -10326217 + L2 LINE L2 2149 2535 -884 6 1452 50 31 0 0 chr9 113750167 113750231 -10325941 + AT_rich Low_complexity Low_complexity 1 64 0 6 1452 300 172 0 0 chr9 113752156 113752214 -10323958 + GA-rich Low_complexity Low_complexity 1 58 0 6 1452 212 328 33 0 chr9 113752684 113752745 -10323427 + ID4 SINE ID 11 73 -10 6 1452 231 253 12 24 chr9 113752796 113752881 -10323291 + L1MB5 LINE L1 6065 6148 -26 6 1452 487 258 118 24 chr9 113753365 113753492 -10322680 - B1_Mur2 SINE Alu -1 148 10 6 1452 274 304 0 0 chr9 113753687 113753756 -10322416 + ID4_ SINE ID 4 72 -11 6 1452 440 355 21 28 chr9 113754286 113754431 -10321741 + RSINE1 SINE B4 1 144 -21 6 1452 1149 74 0 0 chr9 113754467 113754615 -10321557 + B1_Mus1 SINE Alu 1 148 0 6 1452 1334 82 44 0 chr9 113754761 113754943 -10321229 + B2_Mm2 SINE B2 3 192 -3 6 1452 633 222 44 15 chr9 113755607 113755744 -10320428 + ID_B1 SINE B4 84 224 0 6 1452 274 260 131 30 chr9 113755912 113756011 -10320161 + B4A SINE B4 97 205 -87 6 1452 815 260 75 19 chr9 113756558 113756770 -10319402 + ID_B1 SINE B4 1 224 0 6 1452 294 29 0 0 chr9 113757820 113757855 -10318317 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1452 395 346 65 14 chr9 113757855 113757993 -10318179 - RSINE1 SINE B4 -18 147 3 6 1452 394 290 9 9 chr9 113758324 113758432 -10317740 - PB1D10 SINE Alu -9 108 1 6 1452 708 253 58 26 chr9 113759836 113760027 -10316145 - B3A SINE B2 0 198 2 6 1452 27 0 0 0 chr9 113760036 113760063 -10316109 + AT_rich Low_complexity Low_complexity 1 27 0 6 1452 1183 140 92 0 chr9 113760129 113760336 -10315836 + URR1A DNA MER1_type 1 226 0 6 1452 25 0 0 0 chr9 113760420 113760445 -10315727 + AT_rich Low_complexity Low_complexity 1 25 0 6 1452 456 292 0 0 chr9 113760676 113760772 -10315400 + PB1D10 SINE Alu 2 97 -20 6 1452 658 244 16 0 chr9 113761328 113761451 -10314721 - B1_Mur1 SINE Alu -15 134 10 6 1452 379 296 19 69 chr9 113761451 113761487 -10314685 - ID_B1 SINE B4 -15 209 64 6 1452 215 325 25 25 chr9 113761550 113761629 -10314543 - MIRb SINE MIR -171 97 19 6 1452 228 232 98 0 chr9 113762568 113762650 -10313522 - Charlie9 DNA MER1_type 0 2757 2668 6 1452 1020 72 71 14 chr9 113764181 113764321 -10311851 + B1_Mus1 SINE Alu 1 148 0 6 1452 324 0 0 0 chr9 113764775 113764811 -10311361 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1452 255 227 330 0 chr9 113765275 113765363 -10310809 + PB1D9 SINE Alu 4 120 0 6 1452 221 316 13 38 chr9 113765376 113765455 -10310717 + B4A SINE B4 2 78 -214 6 1452 1276 107 27 0 chr9 113765455 113765642 -10310530 + B2_Mm1t SINE B2 2 193 0 6 1452 216 97 0 0 chr9 113765664 113765695 -10310477 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1452 497 317 87 69 chr9 113766848 113767180 -10308992 - MER68 LTR ERVL -78 485 148 6 1452 211 293 123 54 chr9 113767237 113767367 -10308805 + ID_B1 SINE B4 1 139 -85 6 1452 267 259 0 0 chr9 113767316 113767374 -10308798 + PB1D10 SINE Alu 8 65 -52 6 1452 180 234 20 41 chr9 113768575 113768624 -10307548 - L3 LINE CR1 -2218 2271 2224 6 1453 335 167 122 82 chr9 113770515 113770613 -10305559 + B1_Mur4 SINE Alu 38 139 -11 6 1453 575 241 61 18 chr9 113770857 113771010 -10305162 - B1_Mur3 SINE Alu -5 144 2 6 1453 366 264 10 81 chr9 113770929 113771028 -10305144 - B4A SINE B4 -125 167 76 6 1453 274 333 14 14 chr9 113771051 113771124 -10305048 + PB1 SINE Alu 3 75 -52 6 1453 201 161 15 61 chr9 113771616 113771682 -10304490 + T-rich Low_complexity Low_complexity 5 67 0 6 1453 383 304 141 9 chr9 113772774 113772972 -10303200 + MIR SINE MIR 31 245 -23 6 1453 188 34 0 33 chr9 113774056 113774086 -10302086 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1453 209 171 25 62 chr9 113775639 113775720 -10300452 + T-rich Low_complexity Low_complexity 2 79 0 6 1453 913 140 14 0 chr9 113775724 113775867 -10300305 - B1_Mur3 SINE Alu 0 149 5 6 1453 315 391 0 0 chr9 113776215 113776325 -10299847 + PB1D7 SINE Alu 3 112 -8 6 1453 1265 282 83 27 chr9 113776713 113777194 -10298978 - Lx8 LINE L1 -144 7329 6822 6 1453 226 288 58 43 chr9 113778063 113778132 -10298040 + RSINE1 SINE B4 1 70 -95 6 1453 642 291 6 49 chr9 113778075 113778268 -10297904 + B3A SINE B2 13 186 -30 6 1453 243 231 19 0 chr9 113778327 113778379 -10297793 + PB1D10 SINE Alu 45 97 -20 6 1453 645 14 0 0 chr9 113778825 113778899 -10297273 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1453 194 21 0 127 chr9 113779346 113779359 -10296813 + (CAAA)n Simple_repeat Simple_repeat 2 14 0 6 1453 2208 35 31 0 chr9 113779359 113779658 -10296514 + L1Md_A LINE L1 6317 6582 0 6 1453 214 218 164 0 chr9 113780098 113780153 -10296019 + PB1D10 SINE Alu 27 90 -27 6 1453 1225 255 79 82 chr9 113780400 113781046 -10295126 - RMER17C-int LTR ERVK 0 3238 2595 6 1453 1242 61 0 7 chr9 113781071 113781219 -10294953 + B1_Mm SINE Alu 1 147 0 6 1453 266 234 60 72 chr9 113781244 113781327 -10294845 + RLTR25B LTR ERVK 428 509 -519 6 1453 644 73 4 10 chr9 113781260 113781359 -10294813 + B1_Mus2 SINE Alu 43 138 -11 6 1453 243 0 0 0 chr9 113781359 113781386 -10294786 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1453 24 0 0 0 chr9 113781647 113781671 -10294501 + AT_rich Low_complexity Low_complexity 1 24 0 6 1453 552 244 20 120 chr9 113781931 113782191 -10293981 - MYSERV6-int LTR ERVK -318 8641 8435 6 1453 514 235 48 24 chr9 113782173 113782339 -10293833 - RLTR42-int LTR ERVK -3483 2039 1870 6 1453 276 222 67 168 chr9 113782784 113782903 -10293269 - RLTR42-int LTR ERVK -3727 1795 1689 6 1453 522 0 0 0 chr9 113782904 113782962 -10293210 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 6 1453 189 0 0 0 chr9 113783416 113783437 -10292735 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 6 1453 1248 41 0 7 chr9 113783442 113783589 -10292583 - B1_Mus2 SINE Alu 0 147 2 6 1453 274 240 302 0 chr9 113783730 113783859 -10292313 - MLT1A0 LTR MaLR 0 374 198 6 1453 297 284 93 21 chr9 113783897 113783994 -10292178 - MLT1A0 LTR MaLR -254 111 8 6 1453 234 91 0 0 chr9 113784733 113784766 -10291406 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1453 883 167 14 0 chr9 113785817 113785961 -10290211 - B1_Mur2 SINE Alu -1 148 3 6 1453 231 151 19 19 chr9 113786205 113786259 -10289913 + tRNA-Ala-GCY_ tRNA tRNA 2 55 -20 6 1453 1281 182 5 9 chr9 113786924 113787135 -10289037 - B3 SINE B2 -6 210 1 6 1453 23 0 0 0 chr9 113787135 113787158 -10289014 + AT_rich Low_complexity Low_complexity 1 23 0 6 1453 360 0 0 0 chr9 113787159 113787199 -10288973 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 6 1453 647 121 10 0 chr9 113787217 113787316 -10288856 - B2_Mm2 SINE B2 -94 101 2 6 1453 524 204 74 46 chr9 113787320 113787428 -10288744 - B1_Mur1 SINE Alu 0 149 10 6 1453 510 312 55 79 chr9 113789483 113789737 -10286435 + B4 SINE B4 3 250 -42 6 1453 571 231 73 22 chr9 113789957 113790094 -10286078 + B1_Mus2 SINE Alu 3 146 -1 6 1453 871 58 8 8 chr9 113790415 113790537 -10285635 + L1Md_F2 LINE L1 6459 6580 -2 6 1453 220 302 0 128 chr9 113791111 113791167 -10285005 + B4A SINE B4 48 136 -156 6 1453 313 160 3 0 chr9 113791167 113791229 -10284943 + PB1D9 SINE Alu 2 64 -86 6 1453 220 302 0 128 chr9 113791229 113791244 -10284928 + B4A SINE B4 137 163 -129 6 1453 1106 176 38 14 chr9 113791351 113791564 -10284608 - URR1B DNA MER1_type -7 218 1 6 1453 1389 82 0 76 chr9 113791715 113791925 -10284247 + B2_Mm2 SINE B2 2 195 0 6 1453 417 97 0 0 chr9 113792180 113792252 -10283920 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1453 547 265 8 57 chr9 113792259 113792383 -10283789 - B1_Mur1 SINE Alu -23 126 9 6 1453 670 215 92 4 chr9 113792839 113793017 -10283155 - MT2A LTR ERVL -5 596 356 6 1453 1207 193 112 29 chr9 113793144 113793421 -10282751 - MT2A LTR ERVL -233 300 1 6 1453 231 289 0 0 chr9 113794137 113794189 -10281983 - MER2B DNA MER2_type -8 328 277 6 1453 328 224 7 7 chr9 113794694 113794829 -10281343 + (TG)n Simple_repeat Simple_repeat 1 135 0 6 1453 552 323 61 39 chr9 113794857 113795086 -10281086 - B4A SINE B4 -12 280 47 6 1453 809 214 14 0 chr9 113795690 113795835 -10280337 + B1_Mur2 SINE Alu 2 148 -1 6 1453 180 261 0 0 chr9 113796836 113796901 -10279271 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 6 1453 207 0 0 0 chr9 113797651 113797674 -10278498 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 6 1453 226 206 15 109 chr9 113797678 113797818 -10278354 - RMER17C LTR ERVK -146 264 140 6 1453 561 68 0 0 chr9 113797818 113797892 -10278280 + (GAAAA)n Simple_repeat Simple_repeat 3 76 0 6 1453 226 206 15 109 chr9 113797892 113797953 -10278219 - RMER17C LTR ERVK -271 139 82 6 1453 952 151 7 20 chr9 113798260 113798409 -10277763 + B1_Mus2 SINE Alu 1 147 0 6 1453 485 229 64 0 chr9 113799364 113799473 -10276699 + ID_B1 SINE B4 105 220 -4 7 1453 758 229 0 54 chr9 113799499 113799647 -10276525 + B1_Mur2 SINE Alu 3 142 -7 7 1453 1426 81 43 11 chr9 113799659 113799847 -10276325 + B2_Mm2 SINE B2 2 195 0 7 1453 719 223 36 47 chr9 113799852 113800045 -10276127 + B2_Mm2 SINE B2 1 191 -4 7 1453 1307 28 0 0 chr9 113800047 113800190 -10275982 + B1_Mm SINE Alu 1 143 -4 7 1453 288 0 0 0 chr9 113800367 113800399 -10275773 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1453 1121 90 22 17 chr9 113800401 113800581 -10275591 - RLTRETN_Mm LTR ERVK 0 322 142 7 1453 558 209 6 119 chr9 113800789 113800957 -10275215 - B1_Mur2 SINE Alu 0 149 1 7 1453 663 238 69 21 chr9 113801049 113801238 -10274934 - B3A SINE B2 0 198 1 7 1453 444 135 0 0 chr9 113802137 113802211 -10273961 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 1453 296 224 0 0 chr9 113802228 113802277 -10273895 + ID SINE ID 8 56 -168 7 1453 265 268 119 24 chr9 113802794 113802920 -10273252 + B1_Mur2 SINE Alu 2 139 -10 7 1453 381 298 97 45 chr9 113803227 113803403 -10272769 + B3A SINE B2 4 188 -10 7 1453 366 309 56 78 chr9 113803429 113803574 -10272598 + B3A SINE B2 2 144 -54 7 1453 1341 68 0 0 chr9 113803574 113803751 -10272421 + (CA)n Simple_repeat Simple_repeat 1 177 0 7 1453 366 309 56 78 chr9 113803751 113803784 -10272388 + B3A SINE B2 145 175 -23 7 1453 546 216 161 17 chr9 113803811 113803929 -10272243 + B1_Mur3 SINE Alu 3 137 -12 7 1453 22 0 0 0 chr9 113804033 113804055 -10272117 + AT_rich Low_complexity Low_complexity 1 22 0 7 1453 652 219 32 16 chr9 113804324 113804449 -10271723 + B1_Mur1 SINE Alu 7 133 -16 7 1453 675 242 67 0 chr9 113804675 113804824 -10271348 + B3 SINE B2 48 206 -10 7 1453 750 172 0 0 chr9 113804838 113804960 -10271212 + B1_Mus2 SINE Alu 26 147 0 7 1453 639 247 146 31 chr9 113805214 113805406 -10270766 + ID_B1 SINE B4 2 215 -9 7 1453 374 289 43 129 chr9 113806246 113806409 -10269763 - B1F1 SINE Alu 0 149 1 7 1453 656 312 121 48 chr9 113806540 113806752 -10269420 + B4A SINE B4 9 238 -54 7 1453 454 235 12 0 chr9 113806752 113806837 -10269335 + B1_Mus2 SINE Alu 1 86 -61 7 1453 466 261 43 9 chr9 113807081 113807197 -10268975 + PB1D9 SINE Alu 1 120 0 7 1453 403 256 93 43 chr9 113807218 113807357 -10268815 + MTEa LTR MaLR 215 360 -19 7 1453 648 193 9 17 chr9 113807482 113807598 -10268574 + B1_Mur2 SINE Alu 3 117 -32 7 1453 1283 87 6 28 chr9 113809543 113809720 -10266452 + B2_Mm1t SINE B2 2 174 -19 7 1453 686 161 0 0 chr9 113810109 113810220 -10265952 + B1_Mur1 SINE Alu 47 149 0 7 1453 423 208 38 47 chr9 113810277 113810383 -10265789 + ID_B1 SINE B4 80 184 -40 7 1453 323 277 98 0 chr9 113810286 113810398 -10265774 + B1F1 SINE Alu 5 127 -22 7 1453 484 342 12 24 chr9 113811215 113811380 -10264792 - RSINE1 SINE B4 0 165 3 7 1453 432 331 19 26 chr9 113811716 113811871 -10264301 + RSINE1 SINE B4 6 159 -6 7 1453 294 259 94 0 chr9 113812073 113812158 -10264014 - ID_B1 SINE B4 -30 194 102 7 1453 234 297 113 47 chr9 113812158 113812179 -10263993 - B1F SINE Alu -33 116 4 7 1453 561 295 57 14 chr9 113812217 113812427 -10263745 - MER58B DNA MER1_type 0 341 123 7 1453 354 295 47 61 chr9 113812453 113812520 -10263652 + B4A SINE B4 6 68 -224 7 1453 387 0 0 0 chr9 113812520 113812563 -10263609 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1453 354 295 47 61 chr9 113812563 113812579 -10263593 + B4A SINE B4 69 86 -206 7 1453 469 209 162 0 chr9 113812579 113812684 -10263488 + B1_Mus2 SINE Alu 3 124 -23 7 1453 349 295 40 20 chr9 113812709 113812820 -10263352 + B1F1 SINE Alu 1 113 -7 7 1453 860 93 150 106 chr9 113813527 113813707 -10262465 + B2_Mm2 SINE B2 2 189 -6 7 1453 1555 73 5 0 chr9 113813716 113813907 -10262265 + B2_Mm1t SINE B2 2 193 0 7 1453 844 161 86 0 chr9 113814690 113814852 -10261320 - RMER1C Other Other 0 1342 1167 7 1453 564 138 73 0 chr9 113814852 113814961 -10261211 + B2_Mm2 SINE B2 76 192 -3 7 1453 270 246 86 14 chr9 113814963 113815033 -10261139 - B3A SINE B2 -121 77 3 7 1453 813 297 121 0 chr9 113815493 113815749 -10260423 - MTEa LTR MaLR -75 304 18 7 1453 252 130 0 42 chr9 113816034 113816082 -10260090 - B3 SINE B2 -167 49 4 7 1453 807 254 82 15 chr9 113816137 113816333 -10259839 + B3 SINE B2 2 210 -6 7 1453 625 305 6 63 chr9 113816384 113816559 -10259613 + RSINE1 SINE B4 1 165 0 7 1453 223 93 23 23 chr9 113816559 113816603 -10259569 + (CATA)n Simple_repeat Simple_repeat 3 46 0 7 1453 851 253 11 22 chr9 113816705 113816887 -10259285 + B3A SINE B2 1 180 -18 7 1453 733 215 7 0 chr9 113816997 113817132 -10259040 + B1_Mur2 SINE Alu 2 137 -12 7 1453 22 0 0 0 chr9 113817226 113817248 -10258924 + AT_rich Low_complexity Low_complexity 1 22 0 7 1453 252 247 67 27 chr9 113818195 113818270 -10257902 + B3A SINE B2 116 193 -5 7 1453 415 273 0 76 chr9 113818273 113818392 -10257780 + PB1D10 SINE Alu 5 114 -3 7 1453 426 308 40 8 chr9 113818392 113818419 -10257753 + ID_B1 SINE B4 117 257 -35 7 1453 243 179 314 43 chr9 113818794 113818864 -10257308 - RSINE1 SINE B4 -64 101 13 7 1453 489 315 92 34 chr9 113819095 113819302 -10256870 + B4 SINE B4 5 223 -69 7 1453 388 240 113 82 chr9 113819304 113819463 -10256709 + RSINE1 SINE B4 1 164 -1 7 1453 23 0 0 0 chr9 113819474 113819497 -10256675 + AT_rich Low_complexity Low_complexity 1 23 0 7 1453 1250 61 0 7 chr9 113819741 113819890 -10256282 + B1_Mus1 SINE Alu 1 148 0 7 1453 243 206 89 76 chr9 113819891 113819970 -10256202 + RLTR25B LTR ERVK 430 509 -519 7 1453 618 142 19 19 chr9 113819906 113820014 -10256158 + B1_Mus2 SINE Alu 39 146 -1 7 1453 226 204 0 39 chr9 113820023 113820074 -10256098 + GA-rich Low_complexity Low_complexity 3 51 0 7 1453 546 326 33 29 chr9 113820880 113821155 -10255017 - L1MB4 LINE L1 -8 6172 5897 7 1453 606 130 0 0 chr9 113821364 113821472 -10254700 + (TA)n Simple_repeat Simple_repeat 1 108 0 7 1453 393 278 0 11 chr9 113821869 113821960 -10254212 - B1F1 SINE Alu -58 91 2 7 1453 549 0 0 0 chr9 113822185 113822246 -10253926 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1453 378 290 2 12 chr9 113822266 113822364 -10253808 + PB1D9 SINE Alu 4 101 -19 7 1453 774 162 45 15 chr9 113822385 113822517 -10253655 + B1_Mus1 SINE Alu 3 138 -10 7 1453 288 0 0 0 chr9 113822517 113822549 -10253623 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 7 1453 323 226 49 57 chr9 113822642 113822764 -10253408 + L1M4 LINE L1 5321 5441 -743 7 1453 997 234 39 10 chr9 113822866 113823073 -10253099 - B3 SINE B2 -3 213 1 7 1453 742 192 8 0 chr9 113823073 113823198 -10252974 + B3A SINE B2 42 167 -31 7 1453 1151 84 0 0 chr9 113823254 113823396 -10252776 + B1_Mus1 SINE Alu 2 143 -5 7 1453 335 271 128 34 chr9 113823464 113823613 -10252559 + RSINE1 SINE B4 3 165 0 7 1453 831 107 99 0 chr9 113823762 113823883 -10252289 + B1_Mur4 SINE Alu 1 133 -17 7 1453 188 35 35 0 chr9 113824714 113824743 -10251429 + (GTTTG)n Simple_repeat Simple_repeat 5 34 0 7 1453 522 228 35 9 chr9 113824765 113824880 -10251292 - PB1D9 SINE Alu -1 119 2 7 1453 263 146 18 0 chr9 113824935 113824990 -10251182 + GA-rich Low_complexity Low_complexity 4 59 0 7 1453 216 0 0 0 chr9 113825592 113825616 -10250556 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1453 1059 58 50 7 chr9 113825616 113825756 -10250416 - B1_Mm SINE Alu 0 147 2 7 1453 238 268 10 155 chr9 113826213 113826227 -10249945 + B4 SINE B4 148 191 -101 7 1453 345 247 0 0 chr9 113826227 113826300 -10249872 + B1F SINE Alu 70 142 -7 7 1453 259 288 86 12 chr9 113826398 113826479 -10249693 - PB1D7 SINE Alu -32 88 2 7 1453 430 264 128 32 chr9 113826792 113826980 -10249192 + ID_B1 SINE B4 2 207 -17 7 1453 234 0 0 0 chr9 113828450 113828476 -10247696 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1453 1113 109 0 13 chr9 113829099 113829248 -10246924 + B1_Mus1 SINE Alu 2 148 0 7 1453 222 196 0 0 chr9 113829248 113829275 -10246897 + A-rich Low_complexity Low_complexity 1 27 0 7 1453 1257 48 7 0 chr9 113829275 113829420 -10246752 + B1_Mus2 SINE Alu 2 147 0 7 1453 222 196 0 0 chr9 113829420 113829443 -10246729 + A-rich Low_complexity Low_complexity 28 50 0 7 1453 488 259 14 28 chr9 113829541 113829556 -10246616 + ID_B1 SINE B4 72 212 -12 7 1453 753 156 23 0 chr9 113829556 113829684 -10246488 + B1_Mus2 SINE Alu 5 135 -12 7 1453 584 37 37 0 chr9 113829684 113829765 -10246407 + (GAAAA)n Simple_repeat Simple_repeat 2 85 0 7 1453 246 128 77 0 chr9 113830044 113830083 -10246089 + B3 SINE B2 4 45 -171 7 1453 864 230 209 117 chr9 113830084 113830571 -10245601 - MT2A LTR ERVL -1 532 1 7 1453 417 298 98 14 chr9 113830571 113830712 -10245460 + B3A SINE B2 41 193 -5 7 1453 441 232 16 104 chr9 113830806 113830931 -10245241 + PB1 SINE Alu 2 115 -12 7 1453 1132 85 127 6 chr9 113830951 113831117 -10245055 - B2_Mm2 SINE B2 -9 186 1 7 1453 446 187 13 0 chr9 113831478 113831553 -10244619 + B3 SINE B2 1 76 -140 7 1453 1183 242 177 10 chr9 113831559 113832005 -10244167 - RLTR12B LTR ERVK -13 555 26 8 1453 555 219 8 54 chr9 113832023 113832153 -10244019 + B3 SINE B2 71 194 -22 7 1453 456 286 89 30 chr9 113832222 113832424 -10243748 - MTE2b LTR MaLR -82 297 84 8 1453 227 354 40 33 chr9 113832418 113832570 -10243602 - MTD LTR MaLR -232 187 35 8 1453 247 250 127 42 chr9 113832811 113832882 -10243290 - ID2 SINE ID -5 78 2 8 1453 240 274 67 19 chr9 113833084 113833188 -10242984 + L1MB2 LINE L1 5903 6011 -160 8 1453 472 183 24 0 chr9 113833426 113833508 -10242664 + B1_Mur1 SINE Alu 47 130 -19 8 1453 928 267 55 11 chr9 113833531 113833804 -10242368 + B4A SINE B4 2 286 -6 8 1453 279 305 61 32 chr9 113833866 113834137 -10242035 + MLT1F-int LTR MaLR 1 293 -1196 8 1453 500 265 45 0 chr9 113834141 113834273 -10241899 + ID_B1 SINE B4 80 217 -7 8 1453 215 241 93 0 chr9 113834299 113834353 -10241819 + B4 SINE B4 2 60 -232 8 1453 972 195 86 15 chr9 113834368 113834566 -10241606 + B3 SINE B2 2 213 -3 8 1453 385 331 48 16 chr9 113834612 113834738 -10241434 - RSINE1 SINE B4 -14 151 22 8 1453 255 236 18 0 chr9 113834856 113834911 -10241261 - ID4_ SINE ID -11 72 17 8 1453 1403 66 60 0 chr9 113834988 113835171 -10241001 + B2_Mm2 SINE B2 2 195 0 8 1453 1015 159 92 5 chr9 113835212 113835408 -10240764 + B3 SINE B2 3 215 -1 8 1453 2024 211 63 47 chr9 113835411 113835555 -10240617 + Lx9 LINE L1 6268 6411 -1233 8 1453 920 82 80 22 chr9 113835555 113835675 -10240497 + B1_Mus2 SINE Alu 2 132 -15 8 1453 198 71 0 0 chr9 113835675 113835703 -10240469 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1453 920 82 80 22 chr9 113835703 113835720 -10240452 + B1_Mus2 SINE Alu 133 147 0 8 1453 2024 211 63 47 chr9 113835720 113836048 -10240124 + Lx9 LINE L1 6412 6748 -896 8 1453 785 228 137 113 chr9 113836048 113836504 -10239668 - RMER4B LTR ERVK -25 586 20 8 1453 3979 201 47 23 chr9 113836516 113837397 -10238775 + Lx9 LINE L1 6742 7643 -1 8 1453 321 182 61 0 chr9 113837653 113837719 -10238453 - PB1D7 SINE Alu -27 93 24 8 1453 1445 169 102 28 chr9 113837725 113837761 -10238411 + ORR1B1 LTR MaLR 5 41 -353 8 1453 237 33 0 0 chr9 113837761 113837791 -10238381 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1453 1445 169 102 28 chr9 113837791 113838077 -10238095 + ORR1B1 LTR MaLR 42 350 -44 8 1453 768 152 0 0 chr9 113838064 113838182 -10237990 + B1_Mus2 SINE Alu 13 130 -17 8 1453 466 20 0 0 chr9 113838202 113838253 -10237919 + LSU-rRNA_Hsa rRNA rRNA 4466 4516 -519 8 1453 356 143 0 0 chr9 113838253 113838309 -10237863 - B2_Mm2 SINE B2 -138 57 2 8 1453 315 71 0 0 chr9 113838564 113838606 -10237566 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 8 1453 219 36 0 0 chr9 113838639 113838667 -10237505 + (TTAAA)n Simple_repeat Simple_repeat 4 31 0 8 1453 271 137 98 0 chr9 113838668 113838719 -10237453 + ORR1B1 LTR MaLR 312 367 0 8 1453 312 262 118 37 chr9 113838872 113839007 -10237165 - B1_Mur1 SINE Alu -2 147 2 8 1453 279 0 0 0 chr9 113839419 113839450 -10236722 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1453 443 205 123 18 chr9 113839648 113839762 -10236410 - B1_Mur1 SINE Alu -1 148 23 8 1453 253 237 0 38 chr9 113840194 113840273 -10235899 + G-rich Low_complexity Low_complexity 6 81 0 8 1453 357 204 16 60 chr9 113840320 113840503 -10235669 + G-rich Low_complexity Low_complexity 3 177 0 8 1453 266 172 34 22 chr9 113840455 113840544 -10235628 + (CGG)n Simple_repeat Simple_repeat 2 91 0 8 1453 23 68 0 0 chr9 113840888 113840932 -10235240 + GC_rich Low_complexity Low_complexity 1 44 0 8 1453 406 222 33 0 chr9 113842696 113842786 -10233386 + B1F SINE Alu 1 93 -56 8 1453 519 221 55 0 chr9 113842868 113842995 -10233177 + RSINE1 SINE B4 3 136 -29 8 1453 207 204 0 0 chr9 113843166 113843210 -10232962 + CT-rich Low_complexity Low_complexity 1 44 0 8 1453 389 200 182 0 chr9 113843211 113843321 -10232851 - B1F SINE Alu -1 148 19 8 1453 460 98 49 0 chr9 113843347 113843429 -10232743 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 8 1453 635 216 165 21 chr9 113843430 113843624 -10232548 - ID_B1 SINE B4 0 224 3 8 1453 356 218 64 0 chr9 113843651 113843729 -10232443 - B1_Mus1 SINE Alu -38 110 28 8 1453 716 230 150 0 chr9 113844026 113844213 -10231959 + ID_B1 SINE B4 4 218 -6 8 1453 416 242 23 31 chr9 113844373 113844501 -10231671 - Charlie1a DNA MER1_type -374 1081 955 8 1453 883 195 59 64 chr9 113844512 113844715 -10231457 + B3 SINE B2 4 205 -11 8 1453 500 208 8 40 chr9 113844738 113844863 -10231309 - B1_Mur4 SINE Alu -29 121 1 8 1453 453 271 0 83 chr9 113844898 113845055 -10231117 - RSINE1 SINE B4 -6 159 16 8 1453 216 225 162 0 chr9 113845163 113845243 -10230929 - B1F1 SINE Alu -56 93 1 8 1453 243 214 56 28 chr9 113845318 113845390 -10230782 - Charlie1a DNA MER1_type -826 629 556 8 1453 590 243 41 20 chr9 113845417 113845564 -10230608 - RSINE1 SINE B4 -8 157 8 8 1453 1264 58 103 0 chr9 113845811 113845985 -10230187 - B2_Mm2 SINE B2 0 195 4 8 1453 183 42 0 0 chr9 113846092 113846116 -10230056 + (TCTTG)n Simple_repeat Simple_repeat 5 28 0 8 1453 267 186 16 48 chr9 113846148 113846210 -10229962 - ID_B1 SINE B4 -23 201 142 8 1453 291 213 33 0 chr9 113846156 113846217 -10229955 - B1F SINE Alu -31 118 56 8 1453 27 0 0 0 chr9 113846404 113846431 -10229741 + AT_rich Low_complexity Low_complexity 1 27 0 8 1453 867 200 44 24 chr9 113846433 113846638 -10229534 - B3 SINE B2 -6 210 2 8 1453 526 63 25 0 chr9 113846659 113846738 -10229434 + (TG)n Simple_repeat Simple_repeat 1 81 0 8 1453 360 285 103 44 chr9 113846923 113847059 -10229113 + ID_B1 SINE B4 81 224 0 8 1453 1136 68 0 13 chr9 113847426 113847575 -10228597 - B1_Mus1 SINE Alu 0 148 2 8 1453 484 132 89 73 chr9 113847699 113847822 -10228350 + B1_Mur2 SINE Alu 24 148 -1 8 1453 721 242 50 10 chr9 113848909 113849109 -10227063 + B3 SINE B2 1 208 -8 8 1453 329 358 26 33 chr9 113849351 113849504 -10226668 - RSINE1 SINE B4 0 165 14 8 1453 527 246 119 0 chr9 113849766 113849892 -10226280 - ID_B1 SINE B4 0 224 84 8 1453 453 272 102 7 chr9 113849900 113850037 -10226135 - ID_B1 SINE B4 -2 222 73 8 1453 1086 167 99 0 chr9 113850292 113850484 -10225688 + B3 SINE B2 2 212 -4 8 1453 423 0 0 0 chr9 113850987 113851034 -10225138 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1453 388 248 59 0 chr9 113851045 113851146 -10225026 - B3A SINE B2 -91 107 1 8 1453 376 194 0 0 chr9 113851283 113851350 -10224822 - ID4 SINE ID -16 67 1 8 1453 552 207 9 35 chr9 113851351 113851466 -10224706 - PB1D9 SINE Alu -5 115 4 8 1453 502 259 0 36 chr9 113851517 113851657 -10224515 + ID_B1 SINE B4 89 223 -1 8 1453 369 0 0 0 chr9 113851673 113851714 -10224458 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 1453 870 217 5 32 chr9 113851715 113851905 -10224267 + B3 SINE B2 31 215 -1 8 1453 295 322 117 11 chr9 113852147 113852335 -10223837 + L1MB8 LINE L1 5831 6038 -140 8 1453 569 234 251 0 chr9 113852343 113852514 -10223658 - ID_B1 SINE B4 -9 215 2 8 1453 185 93 0 65 chr9 113852518 113852564 -10223608 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 8 1453 216 67 0 0 chr9 113852564 113852594 -10223578 + (GGTTG)n Simple_repeat Simple_repeat 5 34 0 8 1453 931 117 50 21 chr9 113852594 113852734 -10223438 - B1_Mur3 SINE Alu -5 144 1 8 1453 242 304 78 10 chr9 113852833 113852936 -10223236 + L1MB7 LINE L1 6027 6136 -48 8 1453 180 0 0 0 chr9 113853300 113853320 -10222852 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1453 568 243 44 0 chr9 113853411 113853547 -10222625 - B1_Mur1 SINE Alu -6 143 2 8 1453 26 50 0 0 chr9 113853789 113853829 -10222343 + AT_rich Low_complexity Low_complexity 1 40 0 8 1453 523 210 105 0 chr9 113854414 113854538 -10221634 + B1_Mur2 SINE Alu 13 149 0 8 1453 288 183 310 0 chr9 113855134 113855205 -10220967 - PB1D9 SINE Alu -6 114 22 8 1453 1680 162 111 42 chr9 113855310 113855356 -10220816 - ORR1B1 LTR MaLR -8 386 344 8 1453 1013 151 41 46 chr9 113855356 113855551 -10220621 - B2_Mm2 SINE B2 0 195 2 8 1453 1680 162 111 42 chr9 113855551 113855865 -10220307 - ORR1B1 LTR MaLR -51 343 1 8 1453 497 191 45 18 chr9 113855866 113855978 -10220194 - B1_Mur2 SINE Alu -29 120 6 8 1453 28 48 0 0 chr9 113855991 113856033 -10220139 + AT_rich Low_complexity Low_complexity 1 42 0 8 1453 1206 55 0 7 chr9 113856931 113857079 -10219093 + B1_Mus2 SINE Alu 1 147 0 8 1453 529 206 28 9 chr9 113857184 113857292 -10218880 - B1_Mur2 SINE Alu -6 143 34 8 1453 263 260 9 96 chr9 113857225 113857340 -10218832 - MT2B LTR ERVL -345 256 152 8 1453 1448 63 16 0 chr9 113857965 113858154 -10218018 - B2_Mm1a SINE B2 0 193 2 8 1453 933 136 0 0 chr9 113858464 113858604 -10217568 - B1_Mus2 SINE Alu -7 140 1 8 1453 1502 64 37 0 chr9 113858801 113858989 -10217183 - B2_Mm2 SINE B2 0 195 1 8 1453 226 250 0 20 chr9 113858998 113859047 -10217125 - B1F SINE Alu -6 143 96 8 1453 303 39 0 150 chr9 113859407 113859467 -10216705 - URR1A DNA MER1_type -95 131 81 8 1453 484 256 17 8 chr9 113859739 113859857 -10216315 - B3A SINE B2 -79 119 1 8 1453 637 268 128 39 chr9 113859998 113860469 -10215703 + L1MB7 LINE L1 5649 6156 -28 8 1453 21 0 0 0 chr9 113861023 113861044 -10215128 + AT_rich Low_complexity Low_complexity 1 21 0 8 1453 237 132 0 0 chr9 113861222 113861260 -10214912 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 8 1453 306 73 0 0 chr9 113861263 113861304 -10214868 + (CACG)n Simple_repeat Simple_repeat 4 44 0 8 1453 409 285 65 8 chr9 113861322 113861446 -10214726 - RSINE1 SINE B4 -32 133 3 8 1453 604 307 6 6 chr9 113862085 113862262 -10213910 - ID_B1 SINE B4 -8 216 40 8 1453 306 288 2 0 chr9 113862315 113862397 -10213775 - ID4_ SINE ID -61 91 9 8 1453 228 296 61 10 chr9 113862431 113862530 -10213642 - B1F2 SINE Alu -45 104 1 9 1453 324 0 0 0 chr9 113862739 113862775 -10213397 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1453 367 253 24 0 chr9 113862799 113862882 -10213290 - B3A SINE B2 -76 122 38 9 1453 195 42 0 0 chr9 113863057 113863081 -10213091 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1453 571 221 51 51 chr9 113863081 113863219 -10212953 - B1_Mus2 SINE Alu -9 138 1 9 1453 353 266 88 44 chr9 113863661 113863775 -10212397 - B1F SINE Alu -9 140 22 9 1453 324 230 63 113 chr9 113863775 113863803 -10212369 - ID_B1 SINE B4 -9 215 81 9 1453 295 278 113 0 chr9 113864003 113864100 -10212072 - B1F SINE Alu -41 108 1 9 1453 300 264 157 0 chr9 113864124 113864245 -10211927 - B1F SINE Alu -9 140 1 9 1453 379 278 102 25 chr9 113864307 113864425 -10211747 - RSINE1 SINE B4 -35 130 4 9 1453 215 205 0 0 chr9 113864467 113864506 -10211666 - B1F SINE Alu -102 47 9 9 1453 477 291 59 15 chr9 113864798 113864934 -10211238 - B1F SINE Alu -7 142 1 9 1453 201 39 0 0 chr9 113865009 113865035 -10211137 + (CTG)n Simple_repeat Simple_repeat 1 26 0 9 1453 225 0 0 0 chr9 113865597 113865622 -10210550 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 9 1453 463 211 7 89 chr9 113865622 113865748 -10210424 - PB1 SINE Alu -11 116 2 9 1453 676 211 28 0 chr9 113866442 113866584 -10209588 - B1_Mur1 SINE Alu -2 147 2 9 1453 1089 82 0 7 chr9 113866615 113866762 -10209410 - B1_Mus1 SINE Alu -1 147 2 9 1453 26 30 0 0 chr9 113868932 113868965 -10207207 + AT_rich Low_complexity Low_complexity 1 33 0 9 1453 621 184 184 0 chr9 113868966 113869091 -10207081 - B1_Mus1 SINE Alu 0 148 1 9 1453 507 108 0 0 chr9 113869798 113869891 -10206281 + (CCTA)n Simple_repeat Simple_repeat 4 96 0 9 1453 329 232 0 0 chr9 113869941 113870010 -10206162 - PB1D7 SINE Alu -51 69 1 9 1453 322 267 29 44 chr9 113871655 113871792 -10204380 - Charlie2b DNA MER1_type -37 2745 2611 9 1453 541 100 11 22 chr9 113871793 113871885 -10204287 + B1_Mur3 SINE Alu 59 149 0 9 1453 1129 188 29 0 chr9 113872084 113872291 -10203881 - B3 SINE B2 -2 214 2 9 1453 213 263 88 0 chr9 113872316 113872373 -10203799 - PB1D10 SINE Alu -37 80 19 9 1453 412 252 54 9 chr9 113872416 113872528 -10203644 - PB1D10 SINE Alu 0 117 1 9 1453 420 207 35 0 chr9 113872442 113872529 -10203643 - ID_B1 SINE B4 -54 170 81 9 1453 466 292 9 0 chr9 113872606 113872719 -10203453 + RSINE1 SINE B4 52 165 0 9 1453 189 213 0 0 chr9 113873400 113873447 -10202725 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1453 276 254 0 31 chr9 113873970 113874035 -10202137 + PB1D10 SINE Alu 42 104 -13 9 1453 27 0 0 0 chr9 113875581 113875608 -10200564 + AT_rich Low_complexity Low_complexity 1 27 0 9 1453 721 209 41 64 chr9 113875922 113876151 -10200021 - B3A SINE B2 -2 214 1 9 1453 253 297 0 0 chr9 113876475 113876539 -10199633 - L1MD2 LINE L1 -416 5943 5880 9 1453 23 33 0 0 chr9 113879103 113879133 -10197039 + AT_rich Low_complexity Low_complexity 1 30 0 9 1453 256 308 27 45 chr9 113879997 113880109 -10196063 - PB1D7 SINE Alu -10 110 1 9 1453 1152 68 0 7 chr9 113880349 113880496 -10195676 - B1_Mus1 SINE Alu -1 147 2 9 1453 26 0 0 0 chr9 113881145 113881171 -10195001 + AT_rich Low_complexity Low_complexity 1 26 0 9 1453 1326 105 16 10 chr9 113881606 113881799 -10194373 + B2_Mm2 SINE B2 1 194 -1 9 1453 225 0 0 0 chr9 113884697 113884722 -10191450 + (GA)n Simple_repeat Simple_repeat 1 25 0 9 1453 234 0 0 0 chr9 113885064 113885090 -10191082 + (CCGAG)n Simple_repeat Simple_repeat 1 26 0 9 1453 428 270 57 28 chr9 113888367 113888508 -10187664 - RSINE1 SINE B4 -17 148 4 9 1453 348 284 139 33 chr9 113891564 113891779 -10184393 - L1MDa LINE L1 -6268 365 128 9 1453 703 152 121 0 chr9 113891858 113891990 -10184182 - B1_Mur2 SINE Alu 0 149 2 9 1453 286 364 18 0 chr9 113892492 113892602 -10183570 - PB1D10 SINE Alu 0 117 6 9 1453 246 32 0 0 chr9 113893022 113893053 -10183119 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1453 332 241 121 0 chr9 113894151 113894234 -10181938 - RMER30 DNA MER1_type -108 94 2 9 1453 281 317 40 60 chr9 113895716 113895867 -10180305 + B4A SINE B4 1 148 -144 9 1453 478 245 28 9 chr9 113895812 113895919 -10180253 + PB1D10 SINE Alu 9 117 0 9 1453 479 180 207 0 chr9 113895927 113896038 -10180134 + B1_Mur2 SINE Alu 15 148 -1 9 1453 408 40 0 0 chr9 113896833 113896883 -10179289 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1453 410 262 156 0 chr9 113896889 113897011 -10179161 - B4 SINE B4 -34 258 118 9 1453 345 232 67 44 chr9 113897239 113897329 -10178843 - B4 SINE B4 -199 93 2 9 1453 274 235 247 0 chr9 113897445 113897530 -10178642 + PB1D7 SINE Alu 1 106 -14 9 1453 242 106 0 21 chr9 113897540 113897588 -10178584 + (TA)n Simple_repeat Simple_repeat 1 47 0 9 1453 287 227 0 85 chr9 113898754 113898836 -10177336 - B4A SINE B4 0 292 218 9 1453 1041 133 192 6 chr9 113899090 113899272 -10176900 + B3 SINE B2 1 216 0 9 1453 383 288 153 0 chr9 113899313 113899476 -10176696 - B3A SINE B2 -9 189 2 9 1453 388 174 186 62 chr9 113899516 113899645 -10176527 - B4A SINE B4 -80 212 68 9 1453 721 257 45 0 chr9 113900819 113901021 -10175151 + B3 SINE B2 6 216 0 9 1454 383 279 15 23 chr9 113901777 113901909 -10174263 + B3A SINE B2 65 195 -3 9 1454 833 158 44 44 chr9 113902273 113902432 -10173740 + B3 SINE B2 6 164 -52 9 1454 1154 41 14 14 chr9 113902461 113902608 -10173564 + B1_Mus1 SINE Alu 2 148 0 9 1454 617 207 236 0 chr9 113902648 113902822 -10173350 + B3 SINE B2 2 216 0 9 1454 979 194 48 19 chr9 113902947 113903157 -10173015 + B3 SINE B2 1 216 0 9 1454 265 292 88 0 chr9 113903191 113903328 -10172844 + L1MD LINE L1 5200 5348 -798 9 1454 447 289 37 49 chr9 113903557 113903721 -10172451 + RSINE1 SINE B4 2 163 -2 9 1454 3463 25 5 5 chr9 113903737 113904133 -10172039 + MTA_Mm LTR MaLR 1 396 0 9 1454 7980 61 19 69 chr9 113904133 113905289 -10170883 + MTA_Mm-int LTR MaLR 1 1098 0 9 1454 3378 43 2 5 chr9 113905289 113905686 -10170486 + MTA_Mm LTR MaLR 1 396 0 9 1454 963 260 29 26 chr9 113905724 113905996 -10170176 + B4 SINE B4 3 275 -17 9 1454 225 0 0 0 chr9 113905996 113906021 -10170151 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1454 520 271 69 83 chr9 113906022 113906093 -10170079 + ID_B1 SINE B4 23 91 -133 9 1454 335 233 119 55 chr9 113906093 113906202 -10169970 + PB1D10 SINE Alu 1 116 -1 9 1454 373 285 175 49 chr9 113906929 113907222 -10168950 + ORR1E LTR MaLR 8 356 -23 9 1454 588 239 68 37 chr9 113907362 113907553 -10168619 + Tigger5 DNA MER2_type 2138 2334 -72 9 1454 683 191 121 0 chr9 113907566 113907707 -10168465 - B3A SINE B2 -6 192 35 9 1454 244 304 13 0 chr9 113907867 113907946 -10168226 + L1M5 LINE L1 5781 5860 -584 9 1454 615 206 18 9 chr9 113908130 113908262 -10167910 + B1_Mur1 SINE Alu 3 150 0 9 1454 237 202 207 37 chr9 113908622 113908704 -10167468 + B1_Mur4 SINE Alu 42 137 -13 9 1454 229 204 23 0 chr9 113908730 113908774 -10167398 + B4A SINE B4 2 46 -246 9 1454 977 248 148 80 chr9 113908785 113909122 -10167050 + MTD LTR MaLR 8 367 -52 9 1454 1417 64 26 11 chr9 113909757 113909946 -10166226 - B2_Mm1a SINE B2 0 193 2 9 1454 447 297 86 57 chr9 113910383 113910418 -10165754 - B2_Mm2 SINE B2 -10 185 153 9 1454 234 0 0 0 chr9 113910418 113910444 -10165728 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1454 519 297 86 57 chr9 113910444 113910583 -10165589 - B3A SINE B2 -43 152 6 9 1454 37 0 0 0 chr9 113910781 113910818 -10165354 + AT_rich Low_complexity Low_complexity 1 37 0 9 1454 374 329 26 7 chr9 113911224 113911377 -10164795 - Lx8 LINE L1 -145 7328 7173 9 1454 673 268 45 0 chr9 113911439 113911596 -10164576 - RSINE1 SINE B4 0 165 2 9 1454 729 222 27 25 chr9 113911802 113911993 -10164179 - B3 SINE B2 -6 210 21 9 1454 652 289 7 0 chr9 113912048 113912190 -10163982 + RSINE1 SINE B4 1 143 -22 9 1454 342 0 0 0 chr9 113912195 113912233 -10163939 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1454 1143 211 67 0 chr9 113913626 113913910 -10162262 - RMER1C Other Other 0 1342 1040 9 1454 1538 54 0 0 chr9 113914337 113914522 -10161650 - B2_Mm1a SINE B2 -7 186 2 9 1454 721 147 15 8 chr9 113914523 113914653 -10161519 - RMER1C Other Other -288 1054 924 9 1454 606 14 0 0 chr9 113915070 113915141 -10161031 + (TG)n Simple_repeat Simple_repeat 2 72 0 9 1454 312 27 0 0 chr9 113915689 113915726 -10160446 + (TC)n Simple_repeat Simple_repeat 1 37 0 9 1454 333 0 0 0 chr9 113915726 113915762 -10160410 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1454 665 322 61 55 chr9 113915902 113916264 -10159908 + MTE2b LTR MaLR 2 365 -14 9 1454 329 281 133 28 chr9 113916787 113916930 -10159242 - RSINE1 SINE B4 -5 160 3 9 1454 586 232 136 0 chr9 113916945 113917070 -10159102 - B1_Mur2 SINE Alu -6 143 2 9 1454 985 141 14 0 chr9 113917439 113917581 -10158591 - B1_Mur4 SINE Alu -6 144 1 9 1454 623 207 62 82 chr9 113917583 113917778 -10158394 - B3A SINE B2 -4 194 4 9 1454 955 293 172 24 chr9 113918023 113918442 -10157730 - MER76 LTR ERVL -92 599 119 9 1454 605 277 44 0 chr9 113918976 113919113 -10157059 + RSINE1 SINE B4 9 151 -14 9 1454 345 232 151 2 chr9 113919470 113919572 -10156600 - PB1D7 SINE Alu -3 117 2 9 1454 742 172 15 23 chr9 113919769 113919900 -10156272 + B1_Mur2 SINE Alu 18 147 -2 9 1454 1391 70 27 0 chr9 113919922 113920108 -10156064 + B2_Mm1t SINE B2 2 192 -1 9 1454 291 104 0 0 chr9 113920619 113920667 -10155505 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1454 8680 5 0 0 chr9 113920763 113921779 -10154393 - L1Md_T LINE L1 0 6582 5593 1 1454 303 211 95 11 chr9 113921769 113921911 -10154261 - L1M4 LINE L1 -364 5814 5657 1 1454 314 140 0 17 chr9 113921948 113922006 -10154166 + MER44D DNA MER2_type 57 113 -592 1 1454 467 263 17 8 chr9 113922022 113922141 -10154031 - PB1D9 SINE Alu 0 120 1 1 1454 242 235 185 0 chr9 113922155 113922236 -10153936 + MER44D DNA MER2_type 527 622 -83 1 1454 1265 48 0 0 chr9 113922425 113922572 -10153600 - B1_Mus2 SINE Alu 0 147 1 1 1454 489 195 141 82 chr9 113922596 113922780 -10153392 - B3A SINE B2 -3 195 1 1 1454 884 161 7 0 chr9 113922924 113923067 -10153105 + B1_Mus1 SINE Alu 5 148 0 1 1454 27 0 0 0 chr9 113923069 113923096 -10153076 + AT_rich Low_complexity Low_complexity 1 27 0 1 1454 270 0 0 0 chr9 113923287 113923317 -10152855 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1454 725 273 112 48 chr9 113923322 113923572 -10152600 - B4A SINE B4 -17 275 10 1 1454 408 221 0 0 chr9 113923612 113923689 -10152483 - PB1D9 SINE Alu -7 113 37 1 1454 1093 49 0 34 chr9 113923694 113923842 -10152330 + MTA_Mm LTR MaLR 1 143 -253 1 1454 3639 50 54 4 chr9 113923812 113924314 -10151858 + MTA_Mm-int LTR MaLR 572 1098 0 1 1454 3520 23 5 0 chr9 113924314 113924708 -10151464 + MTA_Mm LTR MaLR 1 396 0 1 1454 572 256 43 10 chr9 113924939 113925107 -10151065 + B3A SINE B2 29 205 -11 1 1454 1331 14 0 0 chr9 113926597 113926744 -10149428 + B1_Mus1 SINE Alu 2 148 0 1 1454 315 71 0 0 chr9 113926744 113926786 -10149386 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1454 417 248 6 94 chr9 113927295 113927455 -10148717 + B3A SINE B2 53 198 0 1 1454 334 284 67 114 chr9 113927492 113927710 -10148462 + L1M4 LINE L1 4116 4328 -1818 1 1454 798 216 63 23 chr9 113927710 113927885 -10148287 - B3A SINE B2 -16 182 1 1 1454 334 284 67 114 chr9 113927885 113928027 -10148145 + L1M4 LINE L1 4329 4459 -1687 1 1454 620 235 98 17 chr9 113928036 113928209 -10147963 + B4A SINE B4 1 187 -105 1 1454 831 181 90 0 chr9 113928243 113928409 -10147763 + RMER4B LTR ERVK 34 214 -371 1 1454 251 265 84 109 chr9 113929244 113929457 -10146715 + RMER4B LTR ERVK 367 576 -9 1 1454 326 260 290 41 chr9 113929467 113929788 -10146384 + L1M4 LINE L1 4801 5201 -945 1 1454 426 208 17 78 chr9 113929789 113929904 -10146268 + B1F2 SINE Alu 1 108 -41 1 1454 563 281 44 91 chr9 113930042 113930339 -10145833 + B4A SINE B4 2 284 -8 1 1454 480 285 8 24 chr9 113930420 113930546 -10145626 + PB1 SINE Alu 1 124 -3 1 1454 451 333 41 20 chr9 113930546 113930742 -10145430 + ID_B1 SINE B4 9 208 -16 1 1454 308 276 60 20 chr9 113930737 113930837 -10145335 + ID_B1 SINE B4 72 175 -49 1 1454 444 228 19 38 chr9 113930758 113930863 -10145309 + PB1D7 SINE Alu 18 120 0 1 1454 448 258 15 77 chr9 113930865 113930995 -10145177 + B3A SINE B2 77 198 0 1 1454 837 192 14 0 chr9 113931003 113931149 -10145023 + B1_Mur4 SINE Alu 2 149 -1 1 1454 798 269 129 47 chr9 113931196 113931582 -10144590 + Lx8 LINE L1 6707 7124 -349 1 1454 426 219 55 42 chr9 113931751 113931855 -10144317 - B3A SINE B2 -43 150 33 1 1454 3296 46 5 5 chr9 113931855 113932251 -10143921 - MTA_Mm LTR MaLR 0 396 1 1 1454 426 186 20 49 chr9 113932251 113932283 -10143889 - B3A SINE B2 -166 32 1 1 1454 396 324 146 7 chr9 113932305 113932442 -10143730 - B3 SINE B2 0 216 61 1 1454 1299 194 0 0 chr9 113932471 113932682 -10143490 - B3 SINE B2 -4 212 2 1 1454 203 255 162 45 chr9 113932758 113932869 -10143303 + MIRb SINE MIR 55 178 -90 1 1454 310 167 83 0 chr9 113933051 113933111 -10143061 - ID2 SINE ID -9 74 10 1 1454 239 329 68 0 chr9 113933128 113933201 -10142971 - PB1D10 SINE Alu -11 106 29 1 1454 460 317 16 8 chr9 113933205 113933329 -10142843 + B1F1 SINE Alu 17 141 -8 1 1454 811 236 44 107 chr9 113933360 113933631 -10142541 + B4 SINE B4 16 269 -23 1 1454 405 39 0 0 chr9 113933631 113933682 -10142490 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1454 182 191 0 21 chr9 113933693 113933741 -10142431 + GA-rich Low_complexity Low_complexity 2 48 0 1 1454 227 329 12 0 chr9 113934084 113934166 -10142006 + GA-rich Low_complexity Low_complexity 3 85 0 1 1454 187 103 51 0 chr9 113934178 113934217 -10141955 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1454 412 196 248 57 chr9 113934596 113934753 -10141419 + B4A SINE B4 106 292 0 1 1454 496 248 50 17 chr9 113934839 113934958 -10141214 - RSINE1 SINE B4 -40 125 3 1 1454 357 177 0 0 chr9 113935650 113935729 -10140443 + (CCCTG)n Simple_repeat Simple_repeat 3 81 0 1 1454 1145 127 77 0 chr9 113936163 113936344 -10139828 + B2_Mm2 SINE B2 1 195 0 1 1454 921 211 76 9 chr9 113936364 113936574 -10139598 + ID_B1 SINE B4 1 224 0 1 1454 375 243 9 28 chr9 113936810 113936916 -10139256 + PB1 SINE Alu 24 127 0 1 1454 417 220 21 42 chr9 113937085 113937180 -10138992 + ID_B1 SINE B4 6 98 -126 1 1454 1161 128 102 0 chr9 113937182 113937369 -10138803 - ORR1B1 LTR MaLR -8 386 181 1 1454 558 241 26 21 chr9 113937359 113937503 -10138669 - MT2B LTR ERVL -476 125 1 1 1454 370 245 9 62 chr9 113937503 113937610 -10138562 + ID_B1 SINE B4 115 215 -9 1 1454 780 173 90 0 chr9 113937851 113937984 -10138188 + B1_Mur3 SINE Alu 5 149 0 1 1454 877 281 92 33 chr9 113938001 113938273 -10137899 + B4 SINE B4 2 289 -3 1 1454 219 146 0 0 chr9 113938301 113938342 -10137830 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1454 508 255 183 4 chr9 113938514 113938742 -10137430 + Lx8 LINE L1 6842 7110 -363 1 1454 1050 263 21 186 chr9 113938853 113938942 -10137230 + MLT1A1 LTR MaLR 87 165 -209 1 1454 3899 117 7 19 chr9 113938942 113939516 -10136656 - RMER2 LTR ERV1 0 567 1 1 1454 1050 313 30 14 chr9 113939516 113939764 -10136408 + MLT1A1 LTR MaLR 155 408 0 1 1454 1372 248 94 24 chr9 113939876 113940215 -10135957 - MTE2b LTR MaLR -16 363 1 1 1454 322 212 0 29 chr9 113940834 113940902 -10135270 - PB1D7 SINE Alu -15 105 40 1 1454 1466 66 16 0 chr9 113941046 113941229 -10134943 + B2_Mm2 SINE B2 1 186 -9 1 1454 341 265 34 86 chr9 113941524 113941672 -10134500 - RSINE1 SINE B4 -7 285 89 1 1454 2074 126 9 189 chr9 113941672 113941739 -10134433 - ORR1C1 LTR MaLR 0 378 332 1 1454 838 182 28 0 chr9 113941739 113941882 -10134290 - B1_Mus1 SINE Alu -1 147 1 1 1454 2074 126 9 189 chr9 113941882 113942275 -10133897 - ORR1C1 LTR MaLR -47 331 1 1 1454 298 354 62 74 chr9 113942275 113942415 -10133757 - B4A SINE B4 -119 173 33 1 1454 386 260 106 0 chr9 113942568 113942672 -10133500 - PB1D10 SINE Alu 0 117 3 1 1454 1072 194 0 62 chr9 113942721 113942946 -10133226 - B3 SINE B2 -5 211 1 1 1454 2834 21 0 41 chr9 113943115 113943456 -10132716 - IAPLTR2b LTR ERVK 0 327 1 1 1454 213 39 0 0 chr9 113943706 113943732 -10132440 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 1 1454 416 291 0 37 chr9 113943737 113943844 -10132328 - RSINE1 SINE B4 -5 160 58 1 1454 2027 151 69 0 chr9 113943960 113944182 -10131990 + ORR1D1 LTR MaLR 1 241 -133 1 1454 384 59 0 0 chr9 113944182 113944233 -10131939 + (CCTG)n Simple_repeat Simple_repeat 1 51 0 1 1454 2027 151 69 0 chr9 113944233 113944360 -10131812 + ORR1D1 LTR MaLR 242 373 -1 1 1454 781 226 28 21 chr9 113944630 113944841 -10131331 + B3A SINE B2 1 203 -13 1 1454 415 237 0 40 chr9 113944862 113944963 -10131209 + ID_B1 SINE B4 127 223 -1 1 1454 520 206 82 0 chr9 113944977 113945074 -10131098 + PB1D7 SINE Alu 15 119 -1 1 1454 281 242 0 0 chr9 113945078 113945140 -10131032 + RSINE1 SINE B4 2 63 -102 1 1454 350 217 11 46 chr9 113945798 113945885 -10130287 + RSINE1 SINE B4 82 165 0 1 1454 1711 11 0 16 chr9 113945949 113946143 -10130029 + B2_Mm1a SINE B2 2 192 -1 1 1454 424 250 311 24 chr9 113946177 113946341 -10129831 - ID_B1 SINE B4 -13 211 1 1 1454 312 27 0 0 chr9 113946356 113946393 -10129779 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1454 1201 108 6 0 chr9 113946400 113946566 -10129606 - B2_Mm2 SINE B2 -27 168 2 1 1454 761 218 19 63 chr9 113946572 113946778 -10129394 - B3A SINE B2 0 198 2 1 1454 524 265 45 8 chr9 113946974 113947107 -10129065 - ID_B1 SINE B4 -6 218 81 1 1454 235 360 22 0 chr9 113947373 113947462 -10128710 - PB1D10 SINE Alu -1 116 26 1 1454 696 288 42 109 chr9 113947547 113947633 -10128539 - B4 SINE B4 0 292 216 1 1454 441 0 0 0 chr9 113947633 113947682 -10128490 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1454 1229 56 0 0 chr9 113947682 113947826 -10128346 - B1_Mus1 SINE Alu -1 147 4 1 1454 696 288 42 109 chr9 113947826 113947936 -10128236 - B4 SINE B4 -77 215 108 1 1454 1528 34 17 0 chr9 113947936 113948115 -10128057 - B2_Mm2 SINE B2 -12 183 2 1 1454 696 288 42 109 chr9 113948115 113948134 -10128038 - B4 SINE B4 -185 107 98 1 1454 675 246 47 26 chr9 113948134 113948326 -10127846 - B3A SINE B2 -1 197 2 1 1454 696 288 42 109 chr9 113948326 113948419 -10127753 - B4 SINE B4 -195 97 4 1 1454 1352 187 61 44 chr9 113949162 113949459 -10126713 - RLTR26 LTR ERVK -338 304 3 1 1454 291 203 17 0 chr9 113949466 113949525 -10126647 + RMER15 LTR ERVL 500 559 -16 1 1454 408 302 36 67 chr9 113949565 113949608 -10126564 - B2_Mm2 SINE B2 -2 193 148 1 1454 288 0 0 0 chr9 113949608 113949640 -10126532 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1454 710 241 14 8 chr9 113949640 113949791 -10126381 - B3A SINE B2 -46 152 5 1 1454 207 0 0 0 chr9 113949988 113950011 -10126161 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1454 279 0 0 0 chr9 113950951 113950982 -10125190 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1 1454 431 281 184 7 chr9 113951006 113951142 -10125030 - B3A SINE B2 -36 162 3 1 1454 1271 226 22 14 chr9 113952115 113952393 -10123779 + B4A SINE B4 1 280 -12 1 1454 412 276 66 38 chr9 113952618 113952784 -10123388 - MTE2a LTR MaLR 0 379 168 1 1454 654 125 22 28 chr9 113952806 113952987 -10123185 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1454 617 126 28 28 chr9 113953030 113953210 -10122962 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1454 564 266 265 5 chr9 113953255 113953455 -10122717 - B4A SINE B4 0 292 41 1 1454 666 273 52 42 chr9 113953431 113953622 -10122550 - MTE2a LTR MaLR -186 193 1 1 1454 631 221 183 12 chr9 113953652 113953821 -10122351 + B3A SINE B2 1 198 0 1 1454 282 256 0 35 chr9 113954033 113954118 -10122054 + G-rich Low_complexity Low_complexity 1 82 0 1 1454 775 254 5 48 chr9 113954624 113954831 -10121341 - B3A SINE B2 0 198 1 1 1454 272 309 0 0 chr9 113954839 113954907 -10121265 - ID4_ SINE ID -3 80 13 1 1454 260 326 41 31 chr9 113954936 113955034 -10121138 - B1F SINE Alu -50 99 1 1 1454 276 293 34 8 chr9 113955128 113955245 -10120927 - RMER15 LTR ERVL -76 499 380 1 1454 207 0 0 0 chr9 113955740 113955763 -10120409 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 1 1454 767 241 24 33 chr9 113955810 113956020 -10120152 + MTD LTR MaLR 3 210 -209 1 1454 582 218 167 15 chr9 113956049 113956225 -10119947 + B3 SINE B2 36 216 0 1 1454 467 203 223 32 chr9 113956221 113956409 -10119763 + MTD LTR MaLR 196 419 0 1 1454 271 198 20 30 chr9 113956518 113956617 -10119555 + ORR1B1-int LTR MaLR 615 712 -797 1 1454 653 86 11 0 chr9 113956551 113956644 -10119528 + B1_Mur4 SINE Alu 1 94 -56 1 1454 860 281 39 52 chr9 113956933 113957241 -10118931 - LTR53 LTR ERVL -169 350 47 1 1454 297 135 0 0 chr9 113957301 113957353 -10118819 + (ATGGTG)n Simple_repeat Simple_repeat 5 56 0 1 1454 980 122 0 7 chr9 113957443 113957591 -10118581 + B1_Mur3 SINE Alu 2 148 -1 1 1454 325 286 11 21 chr9 113957683 113957776 -10118396 - MTD LTR MaLR -32 342 251 1 1454 821 252 126 69 chr9 113957804 113958153 -10118019 - RMER20A LTR ERVK -54 462 94 1 1454 617 58 12 0 chr9 113958181 113958267 -10117905 + (CAGG)n Simple_repeat Simple_repeat 4 90 0 1 1454 1440 91 36 22 chr9 113958267 113958492 -10117680 - ORR1D1 LTR MaLR -146 228 1 1 1454 1133 209 119 0 chr9 113958492 113958690 -10117482 + RMER5 LTR ERV1 304 533 -1 1 1454 1747 109 4 0 chr9 113958930 113959177 -10116995 - ORR1A2 LTR MaLR 0 327 80 1 1454 569 237 57 32 chr9 113959264 113959289 -10116883 + ID_B1 SINE B4 64 224 0 1 1454 761 152 91 0 chr9 113959289 113959421 -10116751 + B1F2 SINE Alu 6 149 0 1 1454 1442 66 39 0 chr9 113959444 113959625 -10116547 + B2_Mm2 SINE B2 1 188 -7 1 1454 246 265 27 68 chr9 113959711 113959784 -10116388 + PB1 SINE Alu 22 91 -36 1 1454 394 276 9 9 chr9 113959892 113959998 -10116174 + PB1D10 SINE Alu 11 116 -1 1 1454 544 289 7 0 chr9 113960263 113960398 -10115774 - B1F2 SINE Alu -2 147 12 1 1454 356 275 37 130 chr9 113960295 113960529 -10115643 - RSINE1 SINE B4 -88 204 3 1 1454 307 258 31 51 chr9 113961031 113961129 -10115043 + MTD LTR MaLR 18 113 -306 1 1454 610 193 71 0 chr9 113961126 113961255 -10114917 + MTD LTR MaLR 225 363 -56 1 1454 2031 128 18 113 chr9 113961255 113961652 -10114520 + ORR1B2 LTR MaLR 1 359 -8 1 1454 290 208 26 53 chr9 113961639 113961715 -10114457 + MTD LTR MaLR 346 419 0 1 1454 948 254 37 75 chr9 113961715 113961875 -10114297 - MTD LTR MaLR -153 266 118 1 1454 1221 68 0 0 chr9 113961875 113962023 -10114149 + B1_Mus1 SINE Alu 1 148 0 1 1454 948 254 37 75 chr9 113962023 113962138 -10114034 - MTD LTR MaLR -302 117 2 1 1454 243 0 0 0 chr9 113962149 113962176 -10113996 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1454 369 315 130 22 chr9 113962314 113962499 -10113673 - B4A SINE B4 -80 212 8 1 1454 223 182 0 0 chr9 113962659 113962703 -10113469 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1454 533 179 72 16 chr9 113962704 113962829 -10113343 - B1_Mur4 SINE Alu -16 134 3 1 1454 490 271 15 8 chr9 113963039 113963173 -10112999 - RMER15 LTR ERVL -17 558 424 1 1454 513 115 0 0 chr9 113963488 113963566 -10112606 + (TATG)n Simple_repeat Simple_repeat 2 79 0 1 1454 652 248 0 7 chr9 113963566 113963708 -10112464 - B1_Mur2 SINE Alu -8 141 1 1 1454 237 238 16 0 chr9 113963740 113963803 -10112369 - L1ME3 LINE L1 -230 5932 5869 1 1454 234 0 0 0 chr9 113963825 113963851 -10112321 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1454 416 308 38 15 chr9 113963870 113964002 -10112170 - RSINE1 SINE B4 -2 163 29 1 1454 1241 84 0 11 chr9 113964020 113964201 -10111971 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1 1454 795 73 5 0 chr9 113964207 113964323 -10111849 - B2_Mm2 SINE B2 -95 121 2 1 1454 479 276 97 60 chr9 113964347 113964532 -10111640 - ID_B1 SINE B4 -5 219 28 1 1454 180 0 0 0 chr9 113965255 113965275 -10110897 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1454 279 246 46 0 chr9 113965336 113965401 -10110771 + B1F SINE Alu 50 117 -32 1 1454 236 281 15 84 chr9 113965733 113965765 -10110407 - ID_B1 SINE B4 -86 206 84 1 1454 396 212 0 24 chr9 113965765 113965847 -10110325 - B1F SINE Alu -68 81 2 1 1454 556 199 21 49 chr9 113966122 113966265 -10109907 - ID_B1 SINE B4 -85 139 1 1 1454 738 216 32 13 chr9 113967342 113967497 -10108675 - RSINE1 SINE B4 -5 160 3 1 1454 1327 95 5 36 chr9 113968899 113969095 -10107077 + B2_Mm2 SINE B2 1 190 -5 1 1454 360 43 0 0 chr9 113969330 113969376 -10106796 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1454 519 252 46 0 chr9 113969377 113969508 -10106664 - B3A SINE B2 -46 152 16 1 1454 810 214 85 76 chr9 113969517 113969667 -10106505 - B4A SINE B4 -59 233 81 1 1454 515 262 40 20 chr9 113969667 113969815 -10106357 - RSINE1 SINE B4 -13 152 2 1 1454 810 214 85 76 chr9 113969815 113969887 -10106285 - B4A SINE B4 -212 80 9 1 1454 1119 91 0 0 chr9 113970105 113970248 -10105924 + B1_Mus2 SINE Alu 3 145 -2 1 1454 310 233 138 99 chr9 113970392 113970573 -10105599 - L1M5 LINE L1 -2473 3673 3486 1 1454 963 133 0 20 chr9 113970836 113970982 -10105190 - B1_Mus1 SINE Alu -1 147 5 1 1454 522 352 83 18 chr9 113970985 113971442 -10104730 + Lx8 LINE L1 6958 7444 -29 1 1454 1359 131 14 9 chr9 113971502 113971725 -10104447 - URR1B DNA MER1_type -1 224 1 1 1454 405 0 0 0 chr9 113971904 113971949 -10104223 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1454 614 104 38 25 chr9 113972317 113972475 -10103697 + (CA)n Simple_repeat Simple_repeat 2 161 0 1 1454 542 181 21 21 chr9 113972484 113972580 -10103592 - B1_Mus2 SINE Alu -51 96 1 1 1454 441 0 0 0 chr9 113972610 113972659 -10103513 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1454 405 0 0 0 chr9 113972659 113972703 -10103469 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1454 255 361 31 39 chr9 113972704 113972831 -10103341 - B4A SINE B4 -165 127 2 1 1454 261 267 0 0 chr9 113972911 113972971 -10103201 + PB1 SINE Alu 40 99 -28 1 1454 225 200 0 0 chr9 113973454 113973499 -10102673 + T-rich Low_complexity Low_complexity 1 45 0 1 1454 736 157 56 14 chr9 113973501 113973643 -10102529 - B1_Mus1 SINE Alu 0 148 1 1 1454 486 311 98 90 chr9 113973858 113974204 -10101968 + ORR1E LTR MaLR 4 352 -7 1 1454 2367 210 22 30 chr9 113974398 113974921 -10101251 - RMER17B LTR ERVK -4 954 435 1 1454 476 16 0 16 chr9 113974921 113974983 -10101189 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1454 2367 197 253 20 chr9 113974983 113975232 -10100940 - RMER17B LTR ERVK -524 434 1 1 1454 932 181 65 23 chr9 113975233 113975448 -10100724 + URR1B DNA MER1_type 2 225 0 1 1454 237 266 77 15 chr9 113975448 113975513 -10100659 + MLT1G3 LTR MaLR 448 516 -79 1 1454 761 326 87 64 chr9 113975609 113975841 -10100331 + L1MEg LINE L1 477 702 -5382 1 1454 1088 205 5 23 chr9 113975841 113976061 -10100111 + B3 SINE B2 1 216 0 1 1454 761 326 87 64 chr9 113976061 113976389 -10099783 + L1MEg LINE L1 703 1050 -5034 1 1454 281 273 193 0 chr9 113977447 113977535 -10098637 + RSINE1 SINE B4 30 134 -31 1 1454 213 39 0 0 chr9 113977611 113977637 -10098535 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1454 696 232 104 28 chr9 113978113 113978295 -10097877 + B3A SINE B2 3 198 0 1 1454 1030 135 7 7 chr9 113978297 113978446 -10097726 + B1_Mur4 SINE Alu 1 149 -1 1 1454 391 83 0 40 chr9 113978446 113978521 -10097651 + (TAAA)n Simple_repeat Simple_repeat 1 72 0 1 1454 350 281 182 25 chr9 113978707 113979011 -10097161 - MTEa LTR MaLR -16 363 1 1 1454 261 188 275 0 chr9 113979300 113979369 -10096803 + B3 SINE B2 2 89 -127 1 1454 192 77 0 0 chr9 113979381 113979407 -10096765 + (CATA)n Simple_repeat Simple_repeat 1 26 0 1 1454 492 182 65 23 chr9 113979464 113979598 -10096574 - B3 SINE B2 0 195 49 1 1454 285 188 43 0 chr9 113979820 113980076 -10096096 + (CTGTG)n Simple_repeat Simple_repeat 1 267 0 1 1454 387 216 0 0 chr9 113980083 113980250 -10095922 + (GTGTG)n Simple_repeat Simple_repeat 3 169 0 1 1454 564 206 71 0 chr9 113980500 113980626 -10095546 - ID_B1 SINE B4 -4 220 86 1 1454 479 320 51 0 chr9 113980724 113980880 -10095292 - RSINE1 SINE B4 0 165 2 1 1454 488 59 0 14 chr9 113981216 113981285 -10094887 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 1 1454 344 152 25 38 chr9 113981724 113981881 -10094291 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 1454 488 324 102 14 chr9 113981909 113982194 -10093978 + L1MC4 LINE L1 7578 7887 -155 1 1454 1214 165 31 22 chr9 113983829 113984052 -10092120 - URR1B DNA MER1_type 0 225 1 1 1454 313 314 16 48 chr9 113984355 113984479 -10091693 + BC1_Mm scRNA scRNA 2 121 -31 1 1454 648 112 11 0 chr9 113984521 113984586 -10091586 + 5S rRNA rRNA 1 66 -55 1 1454 1147 199 208 14 chr9 113984586 113984925 -10091247 - MTD LTR MaLR -3 416 5 1 1454 696 253 31 46 chr9 113984953 113984967 -10091205 + B3A SINE B2 6 23 -175 1 1454 378 0 0 0 chr9 113984967 113985009 -10091163 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1454 696 253 31 46 chr9 113985009 113985189 -10090983 + B3A SINE B2 24 197 -1 1 1454 601 260 0 8 chr9 113985226 113985309 -10090863 + B1_Mur1 SINE Alu 3 85 -64 1 1454 3505 25 5 0 chr9 113985309 113985703 -10090469 - MTA_Mm LTR MaLR 0 396 1 1 1454 601 260 0 8 chr9 113985703 113985747 -10090425 + B1_Mur1 SINE Alu 86 128 -21 1 1454 399 261 11 0 chr9 113985843 113985935 -10090237 + B3A SINE B2 2 94 -104 1 1454 381 312 7 48 chr9 113985946 113986091 -10090081 + B3A SINE B2 58 196 -2 1 1454 1366 194 117 0 chr9 113986115 113986492 -10089680 + L1MC1 LINE L1 3368 3788 -2358 1 1454 385 250 70 26 chr9 113986492 113986607 -10089565 + B1F1 SINE Alu 1 120 -29 1 1454 404 342 73 24 chr9 113986607 113986772 -10089400 + B4A SINE B4 1 173 -119 1 1454 306 0 0 0 chr9 113986918 113986952 -10089220 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1454 572 284 80 38 chr9 113986974 113987263 -10088909 + L1MC1 LINE L1 3859 4159 -1987 1 1454 516 246 66 33 chr9 113987272 113987394 -10088778 + B3A SINE B2 1 126 -72 1 1454 423 0 0 0 chr9 113987402 113987449 -10088723 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1454 577 292 20 46 chr9 113987625 113987776 -10088396 - RSINE1 SINE B4 -17 148 2 1 1454 579 237 45 153 chr9 113987840 113988078 -10088094 + MTD LTR MaLR 1 242 -177 1 1454 631 262 12 0 chr9 113988110 113988293 -10087879 + L1MC1 LINE L1 5249 5433 -911 1 1454 1253 272 94 16 chr9 113988313 113988694 -10087478 - MTD LTR MaLR -8 411 1 1 1454 274 289 99 0 chr9 113988694 113988836 -10087336 + L1MC1 LINE L1 5447 5602 -731 1 1454 783 247 117 82 chr9 113988868 113989150 -10087022 - B4 SINE B4 0 292 1 1 1454 385 268 71 71 chr9 113989193 113989502 -10086670 + L1MC1 LINE L1 5995 6303 -30 1 1454 459 0 0 0 chr9 113989530 113989581 -10086591 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 1 1454 652 274 25 6 chr9 113989637 113989795 -10086377 + RSINE1 SINE B4 3 163 -2 1 1454 339 284 29 36 chr9 113989889 113990028 -10086144 - L1MA4 LINE L1 -370 5930 5793 1 1454 306 257 14 54 chr9 113990046 113990120 -10086052 + B4A SINE B4 31 101 -191 1 1454 251 199 199 24 chr9 113990150 113990272 -10085900 + PB1D9 SINE Alu 5 135 -12 1 1454 225 358 37 15 chr9 113990272 113990286 -10085886 + B4 SINE B4 90 228 -64 1 1454 299 271 59 8 chr9 113990950 113991069 -10085103 - MTEb LTR MaLR 0 379 255 1 1454 245 182 23 0 chr9 113991111 113991199 -10084973 + (TCTCTG)n Simple_repeat Simple_repeat 5 94 0 1 1454 776 164 0 8 chr9 113991203 113991332 -10084840 - B1_Mur2 SINE Alu -21 128 1 1 1454 462 290 40 64 chr9 113991336 113991509 -10084663 - MTEb LTR MaLR -203 176 8 1 1454 225 132 0 0 chr9 113991957 113991995 -10084177 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1454 1107 96 0 14 chr9 113992026 113992174 -10083998 - B1_Mus1 SINE Alu 0 148 3 1 1454 257 207 0 17 chr9 113992207 113992266 -10083906 - B3 SINE B2 -7 209 152 1 1454 388 291 87 82 chr9 113992251 113992446 -10083726 - B4A SINE B4 -96 196 1 1 1454 882 284 129 44 chr9 113992843 113993185 -10082987 - MTEa LTR MaLR -8 371 1 1 1454 882 152 7 40 chr9 113993393 113993544 -10082628 + B1_Mus1 SINE Alu 1 146 -2 1 1454 1077 47 47 0 chr9 113993553 113993765 -10082407 + (GGAA)n Simple_repeat Simple_repeat 1 222 0 1 1454 226 308 0 30 chr9 113993838 113993905 -10082267 + tRNA-Ala-GCG tRNA tRNA 2 66 -9 1 1454 367 286 101 7 chr9 113993966 113994114 -10082058 - RSINE1 SINE B4 0 165 4 1 1454 837 56 0 0 chr9 113994120 113994227 -10081945 + (TTTTC)n Simple_repeat Simple_repeat 5 111 0 1 1454 351 0 0 0 chr9 113994228 113994267 -10081905 + (CTCTG)n Simple_repeat Simple_repeat 2 40 0 1 1454 252 0 0 0 chr9 113994267 113994295 -10081877 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1454 765 188 47 0 chr9 113994314 113994442 -10081730 - B1_Mur3 SINE Alu -14 135 2 1 1454 404 188 12 12 chr9 113994536 113994617 -10081555 - ID SINE ID -142 82 2 1 1454 212 122 24 0 chr9 113994799 113994840 -10081332 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 1 1454 387 0 0 0 chr9 113995295 113995338 -10080834 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1454 560 239 8 0 chr9 113995361 113995478 -10080694 + ID_B1 SINE B4 86 203 -21 1 1454 237 243 13 51 chr9 113995491 113995569 -10080603 + ID2 SINE ID 3 77 -6 1 1454 229 309 22 77 chr9 113995577 113995668 -10080504 + B1F1 SINE Alu 7 92 -57 1 1454 475 261 34 0 chr9 113995675 113995794 -10080378 + ID_B1 SINE B4 81 203 -21 1 1454 534 119 24 0 chr9 113995816 113995900 -10080272 - B1_Mus2 SINE Alu 0 147 62 1 1454 1172 70 0 0 chr9 113996864 113997006 -10079166 + B1_Mus1 SINE Alu 2 143 -5 1 1454 605 222 75 14 chr9 113997037 113997183 -10078989 + RSINE1 SINE B4 3 157 -8 1 1454 273 262 107 48 chr9 113997183 113997205 -10078967 + B2_Mm1a SINE B2 2 179 -14 1 1454 345 194 42 0 chr9 113997317 113997389 -10078783 + B1_Mur4 SINE Alu 12 86 -64 1 1454 294 257 0 0 chr9 113997673 113997778 -10078394 + (TG)n Simple_repeat Simple_repeat 1 105 0 1 1454 446 33 0 16 chr9 113997779 113997840 -10078332 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1 1454 329 279 12 0 chr9 113997890 113997976 -10078196 - RSINE1 SINE B4 -8 157 71 1 1454 428 284 81 15 chr9 113998046 113998182 -10077990 - ID_B1 SINE B4 0 224 80 1 1454 530 158 69 0 chr9 113998451 113998552 -10077620 + B3 SINE B2 6 113 -103 1 1454 216 347 10 50 chr9 113998691 113998791 -10077381 - MIRb SINE MIR -113 155 60 1 1454 1814 73 4 0 chr9 113999543 113999775 -10076397 - ORR1A2 LTR MaLR 0 327 95 1 1454 838 57 81 0 chr9 113999877 114000000 -10076172 + B2_Mm2 SINE B2 2 134 -61 1 1454 21 57 0 0 chr9 114000025 114000060 -10076112 + AT_rich Low_complexity Low_complexity 1 35 0 1 1454 940 148 0 0 chr9 114000065 114000207 -10075965 + B1_Mus2 SINE Alu 1 142 -5 2 1454 832 174 21 0 chr9 114000330 114000474 -10075698 + B1_Mur1 SINE Alu 3 149 0 3 1454 295 302 57 25 chr9 114000493 114000615 -10075557 + Lx8 LINE L1 6730 6855 -618 4 1454 553 281 60 20 chr9 114000620 114000769 -10075403 - RSINE1 SINE B4 0 165 11 5 1454 30 0 0 0 chr9 114000775 114000805 -10075367 + AT_rich Low_complexity Low_complexity 1 30 0 6 1454 2045 126 114 22 chr9 114000818 114001223 -10074949 - RMER10A LTR ERVL 0 442 1 7 1454 623 162 7 0 chr9 114001345 114001487 -10074685 + (TG)n Simple_repeat Simple_repeat 1 143 0 8 1454 362 221 120 37 chr9 114001731 114001827 -10074345 + PB1D10 SINE Alu 1 106 -11 9 1454 197 33 33 0 chr9 114001827 114001857 -10074315 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1454 362 221 120 37 chr9 114001857 114001868 -10074304 + PB1D10 SINE Alu 107 117 0 9 1454 930 170 25 0 chr9 114002033 114002192 -10073980 + B3 SINE B2 17 179 -37 1 1454 309 265 0 93 chr9 114002227 114002335 -10073837 + ID_B1 SINE B4 107 204 -20 1 1454 360 169 214 0 chr9 114002339 114002428 -10073744 + B1_Mm SINE Alu 40 147 0 1 1454 385 289 33 78 chr9 114002848 114003028 -10073144 - B4A SINE B4 -120 172 1 1 1454 270 0 0 0 chr9 114003037 114003067 -10073105 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1454 363 274 19 10 chr9 114003067 114003170 -10073002 - B4A SINE B4 -78 214 111 1 1454 28 48 0 0 chr9 114003190 114003232 -10072940 + AT_rich Low_complexity Low_complexity 1 42 0 1 1454 807 216 49 0 chr9 114003246 114003408 -10072764 - ID_B1 SINE B4 -11 213 44 1 1454 233 292 14 0 chr9 114003457 114003529 -10072643 + MTD LTR MaLR 86 158 -261 1 1454 232 203 14 99 chr9 114003540 114003611 -10072561 + 4.5SRNA scRNA scRNA 24 88 -6 2 1454 564 174 41 0 chr9 114003558 114003656 -10072516 + B1_Mur1 SINE Alu 37 138 -11 2 1454 520 206 107 0 chr9 114003687 114003818 -10072354 + MTD LTR MaLR 201 345 -74 1 1454 239 133 22 0 chr9 114003855 114003900 -10072272 - ID SINE ID -178 46 1 1 1454 373 299 72 0 chr9 114003912 114004009 -10072163 - PB1D10 SINE Alu -8 109 6 2 1454 336 289 0 24 chr9 114004114 114004199 -10071973 - RMER15 LTR ERVL -154 421 339 2 1454 1618 124 8 23 chr9 114004265 114004530 -10071642 - Lx3C LINE L1 0 6976 6716 2 1454 268 287 141 59 chr9 114007913 114008183 -10067989 - B4 SINE B4 0 292 1 2 1454 782 186 0 5 chr9 114008805 114009019 -10067153 + GA-rich Low_complexity Low_complexity 1 212 0 2 1454 239 302 109 16 chr9 114009283 114009411 -10066761 + LTR16A1 LTR ERVL 197 336 -120 2 1454 653 211 104 10 chr9 114009755 114009947 -10066225 + B3 SINE B2 1 210 -6 2 1454 572 214 223 11 chr9 114009974 114010149 -10066023 + B3 SINE B2 4 215 -1 2 1454 26 30 0 0 chr9 114010149 114010182 -10065990 + AT_rich Low_complexity Low_complexity 1 33 0 3 1454 295 327 9 56 chr9 114010184 114010291 -10065881 + B3A SINE B2 1 102 -96 3 1454 22 35 0 0 chr9 114010325 114010354 -10065818 + AT_rich Low_complexity Low_complexity 1 29 0 3 1454 712 204 250 0 chr9 114010399 114010571 -10065601 - B3 SINE B2 -1 215 1 3 1454 2937 15 0 43 chr9 114010677 114011029 -10065143 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1454 57043 19 17 1 chr9 114011029 114017401 -10058771 - IAPEz-int LTR ERVK 0 6481 8 3 1454 2924 18 0 43 chr9 114017401 114017753 -10058419 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1454 280 162 0 70 chr9 114017785 114017871 -10058301 + T-rich Low_complexity Low_complexity 5 84 0 3 1454 594 305 35 37 chr9 114017888 114017958 -10058214 + L1M2 LINE L1 3200 3263 -2880 3 1454 2413 66 18 59 chr9 114017958 114018297 -10057875 + ORR1A2 LTR MaLR 1 325 -2 3 1454 594 305 35 37 chr9 114018297 114018601 -10057571 + L1M2 LINE L1 3264 3573 -2570 3 1454 790 134 8 8 chr9 114018608 114018736 -10057436 + B1_Mur3 SINE Alu 10 137 -12 3 1454 324 0 0 0 chr9 114018736 114018772 -10057400 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 3 1454 1295 92 6 0 chr9 114018812 114019174 -10056998 + (TAGA)n Simple_repeat Simple_repeat 1 364 0 4 1454 649 279 50 12 chr9 114019186 114019426 -10056746 + L1M2 LINE L1 3580 3828 -2315 3 1454 211 248 112 37 chr9 114019525 114019659 -10056513 - B1F1 SINE Alu 0 149 6 4 1454 543 321 82 15 chr9 114020293 114020562 -10055610 - B4 SINE B4 -4 288 2 4 1454 387 203 195 0 chr9 114020574 114020692 -10055480 - B1F SINE Alu 0 149 9 4 1454 239 233 33 0 chr9 114022086 114022146 -10054026 + ID4_ SINE ID 15 76 -7 4 1454 360 0 0 0 chr9 114022157 114022197 -10053975 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1454 448 183 0 12 chr9 114022234 114022317 -10053855 + ID_B1 SINE B4 85 166 -58 4 1454 670 204 7 0 chr9 114022344 114022486 -10053686 + B1_Mur1 SINE Alu 7 149 0 4 1454 211 340 28 19 chr9 114022563 114022671 -10053501 + B4 SINE B4 65 173 -119 4 1454 497 239 17 17 chr9 114022588 114022703 -10053469 + PB1D7 SINE Alu 6 120 0 4 1454 207 0 0 0 chr9 114022933 114022956 -10053216 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1454 1113 226 84 12 chr9 114023416 114023761 -10052411 - MTEa LTR MaLR -3 376 7 5 1454 338 332 91 45 chr9 114024397 114024662 -10051510 + MTE2b LTR MaLR 4 280 -99 5 1454 248 297 68 0 chr9 114024843 114024961 -10051211 + MTE2b LTR MaLR 250 375 -4 5 1454 33 0 0 0 chr9 114026077 114026110 -10050062 + AT_rich Low_complexity Low_complexity 1 33 0 5 1454 1880 217 33 41 chr9 114026153 114026663 -10049509 + RLTR11A2 LTR ERVK 1 506 -21 5 1454 1006 219 0 51 chr9 114026726 114026943 -10049229 - ORR1D1 LTR MaLR 0 374 169 5 1454 216 0 0 0 chr9 114027409 114027433 -10048739 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5 1454 1019 96 0 0 chr9 114027434 114027569 -10048603 - B1_Mus2 SINE Alu -12 135 1 5 1454 22 0 0 0 chr9 114027580 114027602 -10048570 + AT_rich Low_complexity Low_complexity 1 22 0 5 1454 200 205 0 0 chr9 114027633 114027672 -10048500 + (TATG)n Simple_repeat Simple_repeat 2 40 0 5 1454 23 33 0 0 chr9 114031355 114031385 -10044787 + AT_rich Low_complexity Low_complexity 1 30 0 6 1454 222 37 0 0 chr9 114031393 114031420 -10044752 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1454 265 338 55 74 chr9 114031698 114031915 -10044257 + ID_B1 SINE B4 10 222 -2 6 1454 210 37 0 0 chr9 114032475 114032502 -10043670 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1455 202 29 57 0 chr9 114032809 114032844 -10043328 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 6 1455 21 0 0 0 chr9 114033014 114033035 -10043137 + AT_rich Low_complexity Low_complexity 1 21 0 6 1455 288 328 72 14 chr9 114033835 114033974 -10042198 - MTE2a LTR MaLR -171 208 62 6 1455 288 77 0 0 chr9 114034198 114034237 -10041935 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 6 1455 223 341 11 0 chr9 114035462 114035553 -10040619 + RSINE1 SINE B4 29 120 -45 6 1455 362 294 26 77 chr9 114035785 114035940 -10040232 - RLTR33 LTR ERVK -85 593 447 6 1455 387 0 0 0 chr9 114037192 114037235 -10038937 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1455 450 0 0 0 chr9 114037235 114037284 -10038888 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1455 471 18 0 0 chr9 114037778 114037834 -10038338 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1455 249 263 0 50 chr9 114037840 114037920 -10038252 - B1_Mur3 SINE Alu -69 80 5 7 1455 282 398 18 27 chr9 114038142 114038364 -10037808 + ID_B1 SINE B4 2 221 -3 7 1455 441 0 0 0 chr9 114039276 114039325 -10036847 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1455 219 69 0 0 chr9 114039606 114039635 -10036537 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 1455 22 0 0 0 chr9 114043538 114043560 -10032612 + AT_rich Low_complexity Low_complexity 1 22 0 7 1455 2734 81 25 33 chr9 114045359 114045754 -10030418 - Lx3_Mus LINE L1 -1 7008 6617 7 1455 8593 62 26 9 chr9 114045758 114045945 -10030227 - L1_Mur1 LINE L1 -772 5114 4916 7 1455 270 56 0 0 chr9 114045945 114045981 -10030191 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 8 1455 8593 62 26 9 chr9 114045981 114046963 -10029209 - L1_Mur1 LINE L1 -971 4915 3927 7 1455 207 0 50 50 chr9 114047027 114047067 -10029105 + (CAAAAA)n Simple_repeat Simple_repeat 6 45 0 8 1455 537 133 0 11 chr9 114047088 114047179 -10028993 + ORR1B2 LTR MaLR 278 367 0 8 1455 516 355 81 16 chr9 114047179 114047488 -10028684 - MTE2b LTR MaLR -48 331 3 8 1455 1993 121 36 62 chr9 114047758 114048094 -10028078 + ORR1A2 LTR MaLR 1 327 0 8 1455 442 312 99 16 chr9 114049602 114049794 -10026378 + B4A SINE B4 14 221 -71 8 1455 423 0 0 0 chr9 114049864 114049911 -10026261 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1455 22 0 0 0 chr9 114050268 114050290 -10025882 + AT_rich Low_complexity Low_complexity 1 22 0 8 1455 39608 43 9 0 chr9 114050290 114056594 -10019578 - L1Md_T LINE L1 -2 6580 281 8 1455 1821 247 5 10 chr9 114056715 114057116 -10019056 + MTD LTR MaLR 13 411 -8 8 1455 693 197 29 29 chr9 114057475 114057611 -10018561 + B1_Mus1 SINE Alu 1 136 -12 9 1455 378 290 44 37 chr9 114058396 114058532 -10017640 + RSINE1 SINE B4 8 144 -21 9 1455 214 120 0 74 chr9 114059802 114059856 -10016316 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 9 1455 203 125 0 24 chr9 114061714 114061755 -10014417 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 1455 421 339 65 77 chr9 114062239 114062549 -10013623 - MTE2b LTR MaLR -12 367 62 9 1455 2688 128 29 0 chr9 114064322 114064730 -10011442 + Lx2 LINE L1 6494 6913 -84 9 1455 33 43 0 0 chr9 114064730 114064777 -10011395 + AT_rich Low_complexity Low_complexity 1 47 0 9 1455 3471 46 22 5 chr9 114064777 114065189 -10010983 - L1Md_F3 LINE L1 0 6584 6166 9 1455 1061 62 0 40 chr9 114065221 114065371 -10010801 - B1_Mus1 SINE Alu 0 148 5 9 1455 338 332 98 25 chr9 114065536 114065740 -10010432 + B4A SINE B4 15 233 -59 9 1455 4436 209 29 29 chr9 114065797 114066698 -10009474 - Lx5 LINE L1 0 7050 6150 1 1455 253 257 106 35 chr9 114067152 114067265 -10008907 - RLTR20D LTR ERVK -389 179 59 1 1455 11006 156 30 23 chr9 114067300 114068701 -10007471 - Lx5 LINE L1 -906 6144 4727 1 1455 3188 93 9 5 chr9 114068701 114069120 -10007052 - L1_Mus1 LINE L1 0 6567 6147 1 1455 11006 158 20 29 chr9 114069120 114069960 -10006212 - Lx5 LINE L1 -1151 4726 3900 1 1455 4719 179 88 14 chr9 114069988 114071304 -10004868 - Lx5 LINE L1 -3542 2335 939 1 1455 1278 124 5 0 chr9 114071309 114071495 -10004677 - B2_Mm1a SINE B2 -2 191 5 1 1455 230 191 0 73 chr9 114071497 114071593 -10004579 + T-rich Low_complexity Low_complexity 4 92 0 1 1455 232 180 0 20 chr9 114072113 114072164 -10004008 - Lx8 LINE L1 -1257 6216 6167 1 1455 243 333 0 12 chr9 114072247 114072329 -10003843 - Lx9 LINE L1 -357 7287 7207 1 1455 1810 280 100 32 chr9 114072379 114073401 -10002771 - L1_Rod LINE L1 -614 5233 4143 1 1455 265 329 12 25 chr9 114073838 114073919 -10002253 + RSINE1 SINE B4 42 121 -44 1 1455 292 355 36 22 chr9 114077515 114077653 -9998519 - MTE2a LTR MaLR -14 365 226 1 1455 277 327 59 47 chr9 114077929 114078004 -9998168 + B4A SINE B4 3 72 -220 1 1455 243 0 0 0 chr9 114078004 114078031 -9998141 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1455 277 327 59 47 chr9 114078031 114078125 -9998047 + B4A SINE B4 73 173 -119 1 1455 438 36 0 0 chr9 114078433 114078489 -9997683 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1455 419 333 19 28 chr9 114078507 114078723 -9997449 - Lx9 LINE L1 -357 7287 7074 1 1455 210 241 15 134 chr9 114086859 114086926 -9989246 + B1F SINE Alu 74 132 -17 1 1455 376 353 43 5 chr9 114089344 114089529 -9986643 + ID_B1 SINE B4 2 193 -31 1 1455 284 328 128 8 chr9 114091485 114091602 -9984570 - MTE2b LTR MaLR -30 349 219 1 1455 479 149 60 0 chr9 114092361 114092529 -9983643 + GA-rich Low_complexity Low_complexity 1 178 0 1 1455 225 0 0 0 chr9 114092530 114092555 -9983617 + (GAGAA)n Simple_repeat Simple_repeat 1 25 0 1 1455 885 168 44 0 chr9 114092557 114092694 -9983478 + B1_Mus2 SINE Alu 2 144 -3 1 1455 21 0 0 0 chr9 114092778 114092799 -9983373 + AT_rich Low_complexity Low_complexity 1 21 0 1 1455 302 319 145 62 chr9 114092944 114093171 -9983001 + B4A SINE B4 27 272 -20 1 1455 848 266 5 20 chr9 114093302 114093505 -9982667 - B3 SINE B2 -16 200 1 1 1455 309 140 17 17 chr9 114094303 114094361 -9981811 - HAL1-3A_ME LINE L1 -825 2033 1976 1 1455 255 133 0 0 chr9 114094364 114094409 -9981763 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1455 219 69 0 0 chr9 114096012 114096041 -9980131 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1455 412 62 15 15 chr9 114096960 114097025 -9979147 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1455 742 254 28 51 chr9 114098300 114098516 -9977656 + B3 SINE B2 1 211 -5 1 1455 411 38 0 0 chr9 114099578 114099631 -9976541 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1 1455 2007 198 45 5 chr9 114100896 114101298 -9974874 - MTC LTR MaLR -2 419 2 1 1455 2164 146 58 70 chr9 114101472 114101870 -9974302 + RLTR9C LTR ERVK 1 393 0 1 1455 305 275 9 44 chr9 114101879 114101993 -9974179 + MMETn-int LTR ERVK 10 119 -4725 1 1455 540 121 0 11 chr9 114102041 114102133 -9974039 + RLTR13D1 LTR ERVK 560 650 -156 1 1455 260 133 133 0 chr9 114102682 114102727 -9973445 + ETnERV2-int LTR ERVK 3442 3492 -3914 1 1455 879 221 12 32 chr9 114102728 114102980 -9973192 + L1VL1 LINE L1 49 295 -6127 1 1455 273 211 0 17 chr9 114102968 114103026 -9973146 + L1Md_F2 LINE L1 301 357 -6259 1 1455 18856 71 6 7 chr9 114103016 114105184 -9970988 + L1Md_F2 LINE L1 1839 4014 -1869 1 1455 3748 15 2 0 chr9 114105184 114105579 -9970593 + MTA_Mm LTR MaLR 1 396 0 1 1455 9726 34 4 1 chr9 114105579 114106674 -9969498 + MTA_Mm-int LTR MaLR 1 1098 0 1 1455 3748 15 2 0 chr9 114106674 114107069 -9969103 + MTA_Mm LTR MaLR 1 396 0 1 1455 18856 71 6 7 chr9 114107069 114107409 -9968763 + L1Md_F2 LINE L1 4015 4344 -1539 1 1455 4190 60 15 83 chr9 114107395 114107516 -9968656 + L1Md_F2 LINE L1 5016 5137 -746 1 1455 266 128 0 78 chr9 114107516 114107567 -9968605 + ORR1A3 LTR MaLR 238 284 -42 1 1455 4190 60 15 83 chr9 114107567 114108008 -9968164 + L1Md_F2 LINE L1 5138 5586 -297 1 1455 8495 47 4 0 chr9 114108009 114109009 -9967163 + L1Md_F2 LINE L1 5588 6582 0 1 1455 4057 185 19 41 chr9 114109009 114111000 -9965172 + MMETn-int LTR ERVK 2002 4085 -3321 1 1455 528 83 0 0 chr9 114111216 114111288 -9964884 + MMETn-int LTR ERVK 7331 7402 -4 1 1455 2277 135 55 75 chr9 114111295 114111696 -9964476 + RLTR9C LTR ERVK 1 393 0 1 1455 504 142 130 19 chr9 114112204 114112312 -9963860 + MTC LTR MaLR 1 120 -301 1 1455 6333 189 71 24 chr9 114112331 114114462 -9961710 - Lx4B LINE L1 -4 7054 4803 1 1455 2065 57 30 16 chr9 114114479 114114782 -9961390 - IAPLTR2b LTR ERVK -20 307 1 1 1455 8530 216 23 38 chr9 114114782 114116710 -9959462 - IAPLTR3-int LTR ERVK -20 6801 4904 1 1455 1932 67 4 0 chr9 114116705 114116944 -9959228 - IAPEY3-int LTR ERVK -5183 2497 2258 1 1455 391 88 0 0 chr9 114116949 114117006 -9959166 - B1_Mus1 SINE Alu -91 57 1 1 1455 4687 98 6 0 chr9 114117006 114117639 -9958533 - IAPLTR4_I LTR ERVK -288 1182 546 1 1455 775 148 30 61 chr9 114117638 114117803 -9958369 - IAPLTR4_I LTR ERVK -1290 180 21 1 1455 2116 57 30 20 chr9 114117819 114118123 -9958049 - IAPLTR2b LTR ERVK -20 307 1 1 1455 6356 161 32 4 chr9 114118123 114119324 -9956848 - Lx4B LINE L1 -1069 4808 3574 1 1455 406 303 0 0 chr9 114119340 114119439 -9956733 - B3A SINE B2 -99 99 1 1 1455 634 234 23 35 chr9 114120081 114120254 -9955918 - B4 SINE B4 0 292 122 1 1455 1066 53 20 7 chr9 114120337 114120489 -9955683 + B2_Mm2 SINE B2 40 193 -2 1 1455 1160 110 81 0 chr9 114121002 114121175 -9954997 - B2_Mm2 SINE B2 -7 188 2 1 1455 26 0 0 0 chr9 114121328 114121354 -9954818 + AT_rich Low_complexity Low_complexity 1 26 0 1 1455 204 237 0 0 chr9 114121362 114121400 -9954772 + A-rich Low_complexity Low_complexity 2 39 0 1 1455 1105 47 14 0 chr9 114121686 114121834 -9954338 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 1 1455 1198 63 0 0 chr9 114121834 114121977 -9954195 - B1_Mm SINE Alu -4 143 1 1 1455 1778 134 19 9 chr9 114122017 114122340 -9953832 + ORR1B2 LTR MaLR 11 336 -31 1 1455 3034 45 13 0 chr9 114122341 114122715 -9953457 + L1Md_F3 LINE L1 6206 6584 0 1 1455 324 0 0 0 chr9 114122777 114122813 -9953359 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1455 201 167 0 27 chr9 114123892 114123929 -9952243 + CT-rich Low_complexity Low_complexity 1 36 0 1 1455 315 215 39 39 chr9 114124148 114124327 -9951845 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1 1455 202 138 0 161 chr9 114124240 114124439 -9951733 + CT-rich Low_complexity Low_complexity 4 170 0 1 1455 330 221 39 39 chr9 114124388 114124567 -9951605 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1 1455 209 158 0 124 chr9 114124492 114124629 -9951543 + CT-rich Low_complexity Low_complexity 2 121 0 1 1455 609 14 0 0 chr9 114124634 114124704 -9951468 + (TCTCCC)n Simple_repeat Simple_repeat 4 73 0 1 1455 415 138 23 0 chr9 114125309 114125396 -9950776 + T-rich Low_complexity Low_complexity 2 90 0 1 1455 207 0 0 0 chr9 114125401 114125424 -9950748 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1455 1229 54 0 0 chr9 114125428 114125575 -9950597 - B1_Mus1 SINE Alu -1 147 1 1 1455 423 53 0 0 chr9 114126212 114126269 -9949903 - ORR1A2 LTR MaLR 0 326 270 1 1455 8006 50 7 1 chr9 114126272 114127703 -9948469 - L1Md_F2 LINE L1 0 6582 5145 1 1455 1787 112 29 0 chr9 114127703 114127980 -9948192 - ORR1A2 LTR MaLR -42 285 1 1 1455 4596 4 0 0 chr9 114128163 114128656 -9947516 + MT2_Mm LTR ERVL 1 493 0 1 1455 48811 16 0 0 chr9 114128656 114134015 -9942157 + MERVL-int LTR ERVL 1 5360 -125 1 1455 354 167 46 35 chr9 114134015 114134102 -9942070 + ORR1A3-int LTR MaLR 553 640 -1323 1 1455 321 0 0 0 chr9 114134102 114134140 -9942032 + MERVL-int LTR ERVL 5448 5485 0 1 1455 4596 4 0 0 chr9 114134140 114134633 -9941539 + MT2_Mm LTR ERVL 1 493 0 1 1455 225 333 43 43 chr9 114134946 114135062 -9941110 + MER44D DNA MER2_type 1 116 -589 1 1455 208 304 38 12 chr9 114135643 114135723 -9940449 - MIRb SINE MIR -74 194 113 1 1455 373 252 44 59 chr9 114136434 114136569 -9939603 + RMER15 LTR ERVL 340 472 -103 1 1455 3819 148 87 1 chr9 114136586 114137265 -9938907 + RMER19A LTR ERVK 1 737 0 1 1455 1134 65 0 0 chr9 114138068 114138206 -9937966 + B1_Mus1 SINE Alu 1 138 -10 1 1455 387 0 0 0 chr9 114138206 114138249 -9937923 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1455 1639 195 29 53 chr9 114138362 114138773 -9937399 - MTD LTR MaLR -8 411 11 1 1455 231 133 22 22 chr9 114139455 114139501 -9936671 - LTRIS2 LTR ERV1 -66 498 453 1 1455 1090 103 7 0 chr9 114140164 114140309 -9935863 + B1_Mm SINE Alu 1 146 -1 1 1455 5583 149 20 19 chr9 114140309 114141575 -9934597 + L1Md_A LINE L1 209 1476 -4407 1 1455 8394 92 1 4 chr9 114141596 114143653 -9932519 - L1Md_F LINE L1 -3737 2146 98 1 1455 939 202 16 32 chr9 114143641 114143892 -9932280 - L1VL1 LINE L1 -6127 295 49 1 1455 277 111 133 0 chr9 114143893 114143938 -9932234 - ETnERV2-int LTR ERVK -3914 3492 3442 1 1455 1071 110 0 21 chr9 114144486 114144672 -9931500 - RLTR13D1 LTR ERVK -156 650 469 1 1455 3254 172 27 26 chr9 114144676 114145404 -9930768 - ETnERV2-int LTR ERVK -4271 3135 1946 1 1455 3966 170 116 63 chr9 114145429 114146701 -9929471 - ETnERV2-int LTR ERVK -5321 2085 2 1 1455 2075 138 58 70 chr9 114146702 114147100 -9929072 - RLTR9C LTR ERVK 0 393 1 1 1455 1892 192 45 5 chr9 114147274 114147676 -9928496 + MTC LTR MaLR 2 419 -2 1 1455 339 44 0 0 chr9 114148942 114148987 -9927185 + (CATA)n Simple_repeat Simple_repeat 4 48 0 1 1455 660 254 28 51 chr9 114150027 114150243 -9925929 - B3 SINE B2 -5 211 1 1 1455 250 87 21 21 chr9 114151518 114151565 -9924607 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1455 219 69 0 0 chr9 114152482 114152511 -9923661 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1455 441 151 0 0 chr9 114154114 114154200 -9921972 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1455 300 83 0 0 chr9 114154200 114154248 -9921924 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1455 764 266 5 20 chr9 114155018 114155221 -9920951 + B3 SINE B2 1 200 -16 1 1455 236 319 145 62 chr9 114155352 114155579 -9920593 - B4A SINE B4 -20 272 27 1 1455 21 0 0 0 chr9 114155724 114155745 -9920427 + AT_rich Low_complexity Low_complexity 1 21 0 1 1455 836 168 44 0 chr9 114155829 114155966 -9920206 - B1_Mus2 SINE Alu -3 144 2 1 1455 984 101 6 27 chr9 114155984 114156167 -9920005 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 1 1455 192 91 0 0 chr9 114156167 114156195 -9919977 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1455 351 65 0 0 chr9 114156197 114156243 -9919929 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 1 1455 263 319 128 8 chr9 114156982 114157099 -9919073 + MTE2b LTR MaLR 219 349 -30 1 1455 317 364 27 5 chr9 114159055 114159243 -9916929 - ID_B1 SINE B4 -31 193 2 1 1456 436 329 19 28 chr9 114163993 114164209 -9911963 + Lx9 LINE L1 7074 7287 -357 1 1456 594 0 0 0 chr9 114164227 114164293 -9911879 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1456 224 321 59 47 chr9 114164599 114164693 -9911479 - B4A SINE B4 -118 174 75 2 1456 279 0 0 0 chr9 114164693 114164724 -9911448 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1456 224 321 59 47 chr9 114164724 114164799 -9911373 - B4A SINE B4 -218 74 5 2 1456 20249 17 1 0 chr9 114165167 114168305 -9907867 - L1Md_T LINE L1 0 6582 3443 2 1456 292 355 36 22 chr9 114168335 114168473 -9907699 + MTE2a LTR MaLR 226 365 -14 2 1456 1509 23 0 22 chr9 114168839 114169006 -9907166 + L1_Mm LINE L1 5420 5586 -297 2 1456 9361 16 0 0 chr9 114169006 114170002 -9906170 + L1Md_A LINE L1 5587 6582 0 2 1456 1509 23 0 22 chr9 114170002 114170013 -9906159 + L1_Mm LINE L1 5587 5594 -289 2 1456 265 329 12 25 chr9 114173252 114173333 -9902839 - RSINE1 SINE B4 -44 121 42 2 1456 1803 283 97 31 chr9 114173767 114174791 -9901381 + L1_Rod LINE L1 4143 5233 -614 2 1456 254 265 156 41 chr9 114174841 114175057 -9901115 + Lx9 LINE L1 7207 7449 -195 2 1456 278 96 35 46 chr9 114175609 114175696 -9900476 + A-rich Low_complexity Low_complexity 5 90 0 2 1456 1381 107 5 0 chr9 114175701 114175888 -9900284 + B2_Mm1a SINE B2 4 191 -2 2 1456 4149 184 82 4 chr9 114175891 114176925 -9899247 + Lx5 LINE L1 952 2051 -3826 2 1456 348 24 0 0 chr9 114176925 114176966 -9899206 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1456 4149 198 50 4 chr9 114176966 114177122 -9899050 + Lx5 LINE L1 2052 2212 -3665 2 1456 1139 124 0 46 chr9 114177122 114177317 -9898855 + L1Md_F2 LINE L1 6394 6579 -3 2 1456 5902 174 52 5 chr9 114177318 114177360 -9898812 + Lx5 LINE L1 4725 4766 -1111 2 1456 243 0 0 0 chr9 114177360 114177387 -9898785 + (GAATG)n Simple_repeat Simple_repeat 3 29 0 2 1456 5902 170 49 10 chr9 114177387 114178700 -9897472 + Lx5 LINE L1 4767 6150 -900 2 1456 4310 203 44 30 chr9 114179279 114180168 -9896004 + Lx5 LINE L1 6150 7050 0 2 1456 343 328 103 25 chr9 114180225 114180428 -9895744 - B4A SINE B4 -59 233 15 2 1456 315 0 0 0 chr9 114180577 114180612 -9895560 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1456 1106 90 0 7 chr9 114180621 114180766 -9895406 + B1_Mus1 SINE Alu 5 148 0 2 1456 3309 68 19 2 chr9 114180804 114181216 -9894956 + L1Md_F3 LINE L1 6166 6584 0 2 1456 33 43 0 0 chr9 114181216 114181263 -9894909 + AT_rich Low_complexity Low_complexity 1 47 0 2 1456 2856 115 10 0 chr9 114181263 114181679 -9894493 - Lx2 LINE L1 -84 6913 6494 2 1456 414 359 48 62 chr9 114183453 114183762 -9892410 + MTE2b LTR MaLR 63 367 -12 2 1456 3388 16 0 8 chr9 114184227 114184617 -9891555 + L1Md_F2 LINE L1 5200 5586 -297 2 1456 8560 51 2 0 chr9 114184617 114185599 -9890573 + L1Md_F2 LINE L1 5587 6570 -12 2 1456 203 125 0 24 chr9 114185606 114185647 -9890525 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1456 378 290 44 37 chr9 114188822 114188958 -9887214 - RSINE1 SINE B4 -21 144 8 2 1456 659 212 29 29 chr9 114189743 114189879 -9886293 - B1_Mus1 SINE Alu -12 136 1 2 1456 1821 247 5 10 chr9 114190238 114190639 -9885533 - MTD LTR MaLR -8 411 13 2 1456 6317 88 22 2 chr9 114190760 114192564 -9883608 + L1Md_F LINE L1 281 2064 -3819 2 1456 36212 35 1 0 chr9 114192551 114198033 -9878139 + L1Md_T LINE L1 9 5589 -297 2 1456 9575 6 0 0 chr9 114198033 114199029 -9877143 + L1Md_T LINE L1 5590 6585 0 2 1456 30794 23 1 0 chr9 114199030 114202581 -9873591 + L1Md_T LINE L1 2034 5586 -297 2 1456 9027 30 1 0 chr9 114202581 114203574 -9872598 + L1Md_T LINE L1 5587 6580 -2 2 1456 387 0 0 0 chr9 114203950 114203993 -9872179 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1456 490 300 98 16 chr9 114204063 114204246 -9871926 - B4A SINE B4 -71 221 24 2 1456 2121 121 36 62 chr9 114205761 114206097 -9870075 - ORR1A2 LTR MaLR 0 327 1 2 1456 600 364 75 18 chr9 114206367 114206676 -9869496 + MTE2b LTR MaLR 3 330 -49 2 1456 567 133 0 11 chr9 114206676 114206767 -9869405 - ORR1B2 LTR MaLR 0 367 278 2 1456 276 39 96 0 chr9 114206770 114206822 -9869350 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 2 1456 8642 64 26 6 chr9 114206906 114207884 -9868288 + L1_Mur1 LINE L1 3926 4899 -987 2 1456 270 56 0 0 chr9 114207884 114207920 -9868252 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 2 1456 8642 64 26 6 chr9 114207920 114208107 -9868065 + L1_Mur1 LINE L1 4900 5112 -774 2 1456 2903 83 25 23 chr9 114208111 114208503 -9867669 + Lx3_Mus LINE L1 6617 7009 0 2 1456 22 0 0 0 chr9 114210303 114210325 -9865847 + AT_rich Low_complexity Low_complexity 1 22 0 2 1456 335 341 142 6 chr9 114212757 114212940 -9863232 + MTE2b LTR MaLR 1 208 -171 2 1456 237 65 0 0 chr9 114214234 114214265 -9861907 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1456 261 0 0 0 chr9 114214548 114214577 -9861595 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1456 379 394 18 23 chr9 114215494 114215715 -9860457 - ID_B1 SINE B4 -3 221 2 2 1456 276 263 0 50 chr9 114215937 114216017 -9860155 + B1_Mur3 SINE Alu 5 80 -69 2 1456 396 0 0 0 chr9 114216023 114216067 -9860105 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1456 481 278 19 77 chr9 114217319 114217475 -9858697 + RLTR33 LTR ERVK 447 593 -85 2 1456 253 341 11 0 chr9 114217709 114217800 -9858372 - RSINE1 SINE B4 -45 120 29 2 1456 280 331 121 11 chr9 114219230 114219404 -9856768 + MTE2a LTR MaLR 16 208 -171 2 1456 21 0 0 0 chr9 114220205 114220226 -9855946 + AT_rich Low_complexity Low_complexity 1 21 0 2 1456 201 39 0 0 chr9 114220403 114220429 -9855743 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1456 465 34 0 0 chr9 114220736 114220795 -9855377 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1456 331 343 51 69 chr9 114221353 114221569 -9854603 - ID_B1 SINE B4 -3 221 10 2 1456 211 162 0 0 chr9 114221814 114221851 -9854321 + PB1D9 SINE Alu 43 79 -41 2 1456 252 180 40 63 chr9 114221875 114221954 -9854218 + B1_Mur2 SINE Alu 40 148 -1 2 1456 214 179 0 0 chr9 114225684 114225723 -9850449 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 1456 22 0 0 0 chr9 114225754 114225776 -9850396 + AT_rich Low_complexity Low_complexity 1 22 0 2 1456 1166 95 0 20 chr9 114225787 114225937 -9850235 + B1_Mus2 SINE Alu 1 147 0 2 1456 1023 203 12 58 chr9 114226367 114226622 -9849550 + ORR1D1 LTR MaLR 145 384 0 2 1456 1939 232 27 41 chr9 114226686 114227199 -9848973 - RLTR11A2 LTR ERVK -21 506 1 2 1456 24 32 0 0 chr9 114227232 114227263 -9848909 + AT_rich Low_complexity Low_complexity 1 31 0 2 1456 180 359 0 0 chr9 114227479 114227532 -9848640 + MIR SINE MIR 79 131 -77 2 1456 3601 75 0 0 chr9 114227974 114228417 -9847755 + L1Md_T LINE L1 6140 6582 0 2 1456 1400 115 23 9 chr9 114228644 114228864 -9847308 - IAPEY2_LTR LTR ERVK 0 357 135 2 1456 250 315 174 9 chr9 114228911 114229135 -9847037 - L2 LINE L2 -1420 1999 1739 2 1456 307 249 241 6 chr9 114229493 114229678 -9846494 + L1M2 LINE L1 4131 4390 -1753 2 1456 775 20 0 30 chr9 114229697 114229798 -9846374 - B1_Mm SINE Alu 0 147 50 2 1456 4863 7 0 0 chr9 114229798 114230337 -9845835 + L1Md_A LINE L1 5048 5586 -297 2 1456 9604 3 0 0 chr9 114230337 114231333 -9844839 + L1Md_A LINE L1 5587 6582 0 2 1456 498 62 0 0 chr9 114231340 114231404 -9844768 - B1_Mus2 SINE Alu -83 64 1 2 1456 1749 99 4 8 chr9 114231431 114231676 -9844496 + L1_Mus2 LINE L1 6037 6280 -286 2 1456 610 143 0 45 chr9 114231676 114231786 -9844386 + L1_Mus2 LINE L1 6462 6566 0 2 1456 720 272 32 0 chr9 114231805 114232022 -9844150 + L1M2 LINE L1 4415 4638 -1505 2 1456 3716 84 104 7 chr9 114232063 114232601 -9843571 - L1_Mus4 LINE L1 -1 6635 6046 2 1456 402 256 16 0 chr9 114232643 114232748 -9843424 + Lx7 LINE L1 7052 7162 -311 2 1456 241 125 18 18 chr9 114232777 114232834 -9843338 + T-rich Low_complexity Low_complexity 4 60 0 2 1456 513 319 53 58 chr9 114233067 114233293 -9842879 - RMER12 LTR ERVK 0 1322 1098 2 1456 4554 150 15 20 chr9 114233588 114234397 -9841775 - RLTR22_Mur LTR ERVK -1043 805 1 2 1456 545 42 14 0 chr9 114234553 114234625 -9841547 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 2 1456 669 283 62 160 chr9 114234989 114235439 -9840733 + RMER10A LTR ERVL 12 417 -25 2 1456 656 241 121 35 chr9 114238604 114238802 -9837370 + B3 SINE B2 2 216 0 2 1456 333 0 0 0 chr9 114239708 114239745 -9836427 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1456 1354 93 5 45 chr9 114239913 114240115 -9836057 - B2_Mm2 SINE B2 0 195 2 2 1456 227 353 0 66 chr9 114240594 114240685 -9835487 + ID_B1 SINE B4 122 206 -18 2 1456 189 74 0 0 chr9 114241961 114241988 -9834184 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1456 310 338 68 26 chr9 114242465 114242699 -9833473 + MIR SINE MIR 3 246 -16 2 1456 248 209 0 43 chr9 114242910 114242980 -9833192 + CT-rich Low_complexity Low_complexity 1 67 0 2 1456 214 228 45 102 chr9 114243186 114243274 -9832898 + FAM SINE Alu 147 229 -82 2 1456 208 188 62 0 chr9 114243653 114243701 -9832471 + (TATAA)n Simple_repeat Simple_repeat 5 55 0 2 1456 21 0 0 0 chr9 114244801 114244822 -9831350 + AT_rich Low_complexity Low_complexity 1 21 0 2 1456 251 71 24 0 chr9 114245061 114245103 -9831069 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 2 1456 828 274 38 0 chr9 114245728 114245940 -9830232 + ID_B1 SINE B4 5 224 0 2 1456 224 303 15 0 chr9 114246037 114246103 -9830069 - B1F SINE Alu -9 140 74 2 1456 310 235 10 20 chr9 114247117 114247217 -9828955 + (TA)n Simple_repeat Simple_repeat 1 99 0 2 1456 473 297 58 82 chr9 114247686 114248002 -9828170 - MTEb LTR MaLR -9 370 62 2 1456 2759 123 12 2 chr9 114249781 114250197 -9825975 + Lx2 LINE L1 6494 6913 -84 2 1456 348 293 152 29 chr9 114250362 114250566 -9825606 + B4A SINE B4 15 243 -49 2 1456 4256 203 32 35 chr9 114250642 114251541 -9824631 - Lx5 LINE L1 -4 7046 6150 2 1456 236 325 73 41 chr9 114251873 114252091 -9824081 - RLTR20D LTR ERVK -285 283 59 2 1456 10624 159 25 32 chr9 114252119 114253953 -9822219 - Lx5 LINE L1 -900 6150 4335 2 1456 1786 26 0 0 chr9 114253953 114254145 -9822027 - B2_Mm1t SINE B2 0 193 2 2 1456 10624 158 24 35 chr9 114254145 114254572 -9821600 - Lx5 LINE L1 -1543 4334 3900 2 1456 4847 187 59 5 chr9 114254600 114254872 -9821300 - Lx5 LINE L1 -3542 2335 2054 2 1456 378 0 0 0 chr9 114254872 114254914 -9821258 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1456 4847 182 87 3 chr9 114254914 114255923 -9820249 - Lx5 LINE L1 -3824 2053 972 2 1456 189 0 0 0 chr9 114255923 114255944 -9820228 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 2 1456 1308 99 41 0 chr9 114255944 114256116 -9820056 - B2_Mm2 SINE B2 -14 181 3 3 1456 216 24 0 68 chr9 114256119 114256163 -9820009 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1456 267 293 115 45 chr9 114256645 114256871 -9819301 - Lx9 LINE L1 -175 7469 7219 3 1456 552 274 44 23 chr9 114256953 114257198 -9818974 - L1_Rod LINE L1 -580 5300 5019 3 1456 3455 196 12 26 chr9 114257333 114257981 -9818191 + Lx5 LINE L1 6150 6788 -262 3 1456 356 177 0 0 chr9 114257988 114258050 -9818122 + Lx5 LINE L1 6232 6293 -757 3 1456 2700 91 11 3 chr9 114258284 114258636 -9817536 + L1_Mus1 LINE L1 6204 6558 -9 3 1456 428 379 37 37 chr9 114259474 114259715 -9816457 + Tigger7 DNA MER2_type 8 248 -2243 3 1456 7711 121 16 24 chr9 114259716 114261924 -9814248 + L1_Mus4 LINE L1 4964 6636 0 3 1456 1739 190 33 45 chr9 114263527 114263924 -9812248 + MTD LTR MaLR 20 411 -8 3 1456 257 194 133 40 chr9 114264747 114264822 -9811350 - RMER15 LTR ERVL 0 575 494 3 1456 1482 155 50 11 chr9 114264823 114265101 -9811071 - RMER19A LTR ERVK 0 737 405 3 1456 223 28 27 27 chr9 114265362 114265399 -9810773 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 1456 1031 148 87 15 chr9 114265734 114265940 -9810232 + L1_Mur2 LINE L1 4511 4731 -1146 3 1456 3357 74 5 5 chr9 114265959 114266378 -9809794 + L1_Mus1 LINE L1 6147 6565 -2 3 1456 8564 163 48 55 chr9 114266386 114267602 -9808570 + Lx4B LINE L1 4108 5308 -569 3 1456 1081 123 0 14 chr9 114267602 114267750 -9808422 - B1_Mus2 SINE Alu 0 147 2 3 1456 8564 192 61 36 chr9 114267750 114269426 -9806746 + Lx4B LINE L1 5309 7054 -4 3 1456 543 142 130 19 chr9 114269448 114269556 -9806616 - MTC LTR MaLR -301 120 1 3 1456 234 0 0 0 chr9 114269805 114269831 -9806341 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1456 2060 186 21 40 chr9 114270327 114270540 -9805632 + MTC LTR MaLR 2 212 -209 3 1456 1696 42 0 0 chr9 114270540 114270733 -9805439 + B2_Mm1a SINE B2 1 193 0 3 1456 2060 186 21 40 chr9 114270733 114270945 -9805227 + MTC LTR MaLR 213 419 -2 3 1456 443 90 0 13 chr9 114272250 114272329 -9803843 + (CATA)n Simple_repeat Simple_repeat 4 81 0 3 1456 752 255 27 50 chr9 114273382 114273601 -9802571 - B3 SINE B2 -2 214 1 3 1456 596 54 0 0 chr9 114274940 114275014 -9801158 + L1_Mus2 LINE L1 6492 6565 -1 3 1456 1018 241 57 133 chr9 114275128 114275511 -9800661 - MTEa LTR MaLR -20 359 6 3 1456 680 196 222 5 chr9 114275775 114275960 -9800212 - URR1B DNA MER1_type 0 225 1 3 1456 864 282 56 22 chr9 114276072 114276340 -9799832 + B4 SINE B4 3 279 -13 3 1456 612 241 17 74 chr9 114276543 114276718 -9799454 - RSINE1 SINE B4 0 165 1 3 1456 523 96 0 0 chr9 114276803 114276876 -9799296 + B2_Mm2 SINE B2 1 73 -122 3 1456 372 291 81 15 chr9 114278503 114278639 -9797533 - ID_B1 SINE B4 0 224 80 3 1456 1713 73 4 0 chr9 114279247 114279479 -9796693 - ORR1A2 LTR MaLR 0 327 95 3 1456 1329 73 0 6 chr9 114279581 114279759 -9796413 + B2_Mm2 SINE B2 2 178 -17 3 1456 796 174 21 0 chr9 114279780 114279924 -9796248 + B1_Mus2 SINE Alu 1 147 0 3 1456 309 301 56 24 chr9 114279943 114280069 -9796103 + Lx8 LINE L1 6730 6859 -614 3 1456 632 299 6 19 chr9 114280070 114280227 -9795945 - RSINE1 SINE B4 0 165 11 3 1456 30 0 0 0 chr9 114280233 114280263 -9795909 + AT_rich Low_complexity Low_complexity 1 30 0 3 1456 1882 134 114 22 chr9 114280276 114280681 -9795491 - RMER10A LTR ERVL 0 442 1 3 1456 375 0 0 0 chr9 114280830 114280874 -9795298 - HAL1-3A_ME LINE L1 -840 2018 1975 3 1456 540 158 0 0 chr9 114280878 114280992 -9795180 + (TG)n Simple_repeat Simple_repeat 1 114 0 3 1456 355 223 124 19 chr9 114281228 114281333 -9794839 + PB1D10 SINE Alu 1 116 -1 3 1456 890 177 32 0 chr9 114281495 114281653 -9794519 + B3 SINE B2 17 179 -37 3 1456 318 260 0 94 chr9 114281688 114281794 -9794378 + ID_B1 SINE B4 107 202 -22 3 1456 420 168 137 0 chr9 114281799 114281894 -9794278 + B1_Mus2 SINE Alu 40 147 0 3 1456 416 269 17 91 chr9 114282309 114282485 -9793687 - B4 SINE B4 -120 172 10 3 1456 353 342 24 36 chr9 114282484 114282651 -9793521 - B4A SINE B4 -47 245 81 3 1456 234 329 41 41 chr9 114282641 114282812 -9793360 + YREP_Mm Unknown Unknown 126 296 -1516 3 1456 790 224 50 0 chr9 114282701 114282862 -9793310 - ID_B1 SINE B4 -12 212 44 3 1456 2487 57 6 3 chr9 114282865 114283200 -9792972 - MT2C_Mm LTR ERVL -139 336 1 3 1456 382 340 91 45 chr9 114283284 114283549 -9792623 + MTE2b LTR MaLR 4 280 -99 3 1456 296 256 52 110 chr9 114283715 114283869 -9792303 + MTE2b LTR MaLR 231 375 -4 3 1456 365 229 0 0 chr9 114285212 114285282 -9790890 - ID4 SINE ID -13 70 1 3 1456 652 277 41 32 chr9 114285703 114285923 -9790249 + ID_B1 SINE B4 1 222 -2 3 1456 580 283 0 7 chr9 114286135 114286281 -9789891 + RSINE1 SINE B4 2 146 -19 3 1456 224 220 17 0 chr9 114286295 114286354 -9789818 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 3 1456 276 324 28 9 chr9 114286354 114286460 -9789712 + PB1D10 SINE Alu 5 112 -5 3 1456 601 278 72 27 chr9 114286471 114286523 -9789649 + B4A SINE B4 2 54 -238 3 1456 297 0 0 0 chr9 114286523 114286556 -9789616 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1456 601 278 72 27 chr9 114286556 114286725 -9789447 + B4A SINE B4 55 233 -59 3 1456 353 216 28 56 chr9 114286720 114286828 -9789344 + RSINE1 SINE B4 13 117 -48 3 1456 255 31 0 0 chr9 114286855 114286887 -9789285 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1456 288 0 0 0 chr9 114286887 114286918 -9789254 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1456 314 253 0 0 chr9 114287481 114287556 -9788616 + ID SINE ID 8 82 -142 3 1456 428 288 0 9 chr9 114287696 114287808 -9788364 - PB1D7 SINE Alu 0 120 10 3 1456 391 247 67 0 chr9 114287925 114288014 -9788158 + PB1D10 SINE Alu 21 115 -2 3 1456 803 65 0 0 chr9 114288182 114288289 -9787883 + B2_Mm2 SINE B2 1 107 -88 3 1456 617 220 37 12 chr9 114288424 114288585 -9787587 + RSINE1 SINE B4 1 165 0 3 1456 248 328 35 84 chr9 114288597 114288618 -9787554 + B4 SINE B4 69 82 -210 3 1456 538 252 0 52 chr9 114288618 114288752 -9787420 + B1F2 SINE Alu 1 127 -22 3 1456 403 176 0 14 chr9 114289572 114289641 -9786531 + ID4_ SINE ID 3 70 -13 3 1456 22 35 0 0 chr9 114289673 114289702 -9786470 + AT_rich Low_complexity Low_complexity 1 29 0 3 1456 1256 14 0 0 chr9 114289704 114289851 -9786321 + B1_Mm SINE Alu 1 147 0 3 1456 291 54 0 0 chr9 114289853 114289890 -9786282 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1456 503 226 105 0 chr9 114289920 114290053 -9786119 + ID_B1 SINE B4 78 224 0 3 1456 1376 51 0 11 chr9 114290969 114291147 -9785025 + B2_Mm1a SINE B2 4 179 -14 3 1456 199 0 65 0 chr9 114291151 114291182 -9784990 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1456 593 247 62 0 chr9 114291190 114291336 -9784836 + B3 SINE B2 3 157 -59 3 1456 247 300 38 0 chr9 114291400 114291480 -9784692 + RSINE1 SINE B4 62 144 -21 3 1456 28 29 0 0 chr9 114291513 114291548 -9784624 + AT_rich Low_complexity Low_complexity 1 35 0 3 1456 427 201 0 0 chr9 114291643 114291732 -9784440 + ID4 SINE ID 3 91 -61 3 1456 567 252 78 29 chr9 114291761 114291965 -9784207 - ID_B1 SINE B4 -10 214 1 3 1456 258 313 3 42 chr9 114292256 114292352 -9783820 + ID4 SINE ID 2 99 -53 3 1456 248 206 27 68 chr9 114292484 114292557 -9783615 - PB1D9 SINE Alu 0 120 51 3 1456 1100 49 150 18 chr9 114292710 114292877 -9783295 + B2_Mm2 SINE B2 1 189 -6 3 1456 723 106 9 0 chr9 114293253 114293366 -9782806 + B1_Mus2 SINE Alu 29 142 -5 3 1456 263 327 0 127 chr9 114293548 114293674 -9782498 + MT2B LTR ERVL 131 240 -361 3 1456 271 291 80 66 chr9 114293580 114293600 -9782572 + B4 SINE B4 72 223 -68 3 1456 660 169 62 0 chr9 114293600 114293730 -9782442 + B1_Mur1 SINE Alu 12 149 0 3 1456 23 0 0 0 chr9 114294168 114294191 -9781981 + AT_rich Low_complexity Low_complexity 1 23 0 3 1456 352 217 0 14 chr9 114294191 114294261 -9781911 - ID_B1 SINE B4 -13 211 143 3 1456 198 0 0 0 chr9 114294286 114294308 -9781864 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1456 527 240 15 8 chr9 114294477 114294607 -9781565 - ID_B1 SINE B4 -92 132 2 3 1457 395 250 0 21 chr9 114294880 114294974 -9781198 - B1F SINE Alu -57 92 1 3 1457 463 275 58 0 chr9 114295078 114295198 -9780974 + RSINE1 SINE B4 4 130 -35 3 1457 306 0 0 0 chr9 114295209 114295243 -9780929 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1457 383 98 0 16 chr9 114295533 114295595 -9780577 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 3 1457 698 281 93 5 chr9 114295595 114295799 -9780373 - ID_B1 SINE B4 -2 222 1 3 1457 682 298 101 71 chr9 114296583 114296884 -9779288 + MTEa LTR MaLR 1 309 -70 3 1457 1353 70 16 0 chr9 114296884 114297070 -9779102 - B2_Mm1a SINE B2 -3 190 2 3 1457 682 298 101 71 chr9 114297070 114297136 -9779036 + MTEa LTR MaLR 310 379 0 3 1457 212 0 36 0 chr9 114297322 114297350 -9778822 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1457 372 22 0 0 chr9 114297363 114297408 -9778764 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 3 1457 606 200 32 32 chr9 114297712 114297867 -9778305 + RSINE1 SINE B4 3 157 -8 3 1457 22 56 0 0 chr9 114297870 114297906 -9778266 + AT_rich Low_complexity Low_complexity 1 36 0 3 1457 364 216 11 33 chr9 114298347 114298438 -9777734 + ID_B1 SINE B4 114 202 -22 3 1457 770 204 5 77 chr9 114298544 114298740 -9777432 + B3A SINE B2 1 182 -16 3 1457 21 0 0 0 chr9 114299417 114299438 -9776734 + GC_rich Low_complexity Low_complexity 1 21 0 4 1457 215 363 40 16 chr9 114300033 114300159 -9776013 - B1F SINE Alu 0 149 21 4 1457 1205 34 0 0 chr9 114300348 114300494 -9775678 + B1_Mus2 SINE Alu 1 146 -1 4 1457 623 178 7 0 chr9 114300548 114300683 -9775489 + (TA)n Simple_repeat Simple_repeat 1 136 0 4 1457 448 196 48 19 chr9 114300709 114300813 -9775359 + PB1D9 SINE Alu 13 119 -1 4 1457 461 278 71 0 chr9 114300839 114300965 -9775207 + RSINE1 SINE B4 10 144 -21 4 1457 1273 93 16 5 chr9 114301165 114301349 -9774823 + B2_Mm2 SINE B2 2 187 -8 4 1457 1178 48 0 0 chr9 114301447 114301594 -9774578 + B1_Mus2 SINE Alu 1 147 0 4 1457 788 251 48 19 chr9 114301612 114301819 -9774353 + B3 SINE B2 4 216 0 4 1457 263 278 0 0 chr9 114301829 114301883 -9774289 + ID4 SINE ID 20 73 -10 4 1457 1560 195 109 6 chr9 114301913 114302090 -9774082 - MTD LTR MaLR -15 404 195 4 1457 183 80 0 0 chr9 114302090 114302115 -9774057 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 4 1457 1560 195 109 6 chr9 114302115 114302303 -9773869 - MTD LTR MaLR -225 194 2 4 1457 521 216 63 16 chr9 114302306 114302433 -9773739 - MTD LTR MaLR -15 404 272 4 1457 413 148 54 46 chr9 114302500 114302594 -9773578 - B1_Mur1 SINE Alu -1 148 32 4 1457 507 128 0 0 chr9 114302594 114302680 -9773492 + (TG)n Simple_repeat Simple_repeat 1 86 0 4 1457 334 271 8 63 chr9 114302680 114302711 -9773461 - PB1D9 SINE Alu -89 31 1 4 1457 483 297 75 25 chr9 114302711 114302899 -9773273 - MTD LTR MaLR -212 209 12 4 1457 345 267 70 31 chr9 114302904 114303069 -9773103 - MER102a DNA MER1_type -118 212 46 4 1457 182 37 37 0 chr9 114303281 114303308 -9772864 + (GGA)n Simple_repeat Simple_repeat 3 30 0 4 1457 899 93 139 0 chr9 114303316 114303467 -9772705 + B2_Mm2 SINE B2 1 172 -23 4 1457 1081 62 7 20 chr9 114303490 114303638 -9772534 + B1_Mus2 SINE Alu 2 147 0 4 1457 314 372 0 0 chr9 114304153 114304247 -9771925 - RSINE1 SINE B4 -16 149 56 4 1457 1929 117 3 76 chr9 114304282 114304625 -9771547 - ORR1A3 LTR MaLR -8 318 1 4 1457 276 247 214 10 chr9 114304637 114304735 -9771437 - PB1D7 SINE Alu -2 118 1 4 1457 648 295 40 86 chr9 114304792 114305077 -9771095 - B4A SINE B4 0 292 26 4 1457 1611 135 4 0 chr9 114305079 114305338 -9770834 + MYSERV6-int LTR ERVK 1824 2083 -6876 4 1457 468 149 166 89 chr9 114305318 114305487 -9770685 + MYSERV6-int LTR ERVK 4381 4562 -4397 4 1457 4102 149 7 6 chr9 114305675 114306352 -9769820 + RLTR33 LTR ERVK 1 678 0 4 1457 975 88 0 7 chr9 114306354 114306491 -9769681 + MYSERV6-int LTR ERVK 4561 4696 -4263 4 1457 1906 118 29 29 chr9 114306508 114306858 -9769314 + MYSERV6-int LTR ERVK 4670 5019 -3940 4 1457 231 245 20 0 chr9 114306920 114306969 -9769203 + B1_Mur4 SINE Alu 1 50 -100 4 1457 5989 144 14 36 chr9 114306972 114308045 -9768127 + MYSERV6-int LTR ERVK 5046 6094 -2865 4 1457 341 287 0 11 chr9 114308108 114308196 -9767976 - B1F SINE Alu -57 92 6 4 1457 323 304 159 8 chr9 114308358 114308484 -9767688 + B1_Mur2 SINE Alu 5 149 0 4 1457 1024 97 14 0 chr9 114308554 114308698 -9767474 + B1_Mus2 SINE Alu 2 147 0 4 1457 265 292 10 0 chr9 114309052 114309098 -9767074 + B1_Mur2 SINE Alu 52 98 -51 4 1457 1165 36 0 0 chr9 114309098 114309237 -9766935 + B1_Mus2 SINE Alu 2 140 -7 4 1457 265 292 10 0 chr9 114309237 114309286 -9766886 + B1_Mur2 SINE Alu 99 147 -2 4 1457 906 60 0 0 chr9 114309287 114309404 -9766768 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 4 1457 228 237 66 33 chr9 114309405 114309466 -9766706 + ZP3AR Satellite Satellite 42 104 -108 4 1457 274 329 0 0 chr9 114309413 114309489 -9766683 + ID4_ SINE ID 6 81 -2 4 1457 216 0 0 0 chr9 114309496 114309520 -9766652 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 1457 271 232 29 14 chr9 114309609 114309679 -9766493 + ID_B1 SINE B4 79 149 -75 4 1457 192 215 190 0 chr9 114309834 114309913 -9766259 - MER5A DNA MER1_type -89 100 7 4 1457 1139 61 7 0 chr9 114311705 114311852 -9764320 + B1_Mus1 SINE Alu 1 148 0 4 1457 670 122 0 0 chr9 114311926 114312033 -9764139 - B1_Mus2 SINE Alu 0 147 41 4 1457 1152 133 0 0 chr9 114312072 114312245 -9763927 - B2_Mm2 SINE B2 -22 173 1 4 1457 1636 21 0 0 chr9 114312367 114312560 -9763612 - B2_Mm1a SINE B2 0 193 1 4 1457 856 233 32 5 chr9 114312560 114312776 -9763396 - ID_B1 SINE B4 -2 222 1 4 1457 282 86 89 0 chr9 114313060 114313124 -9763048 + B1_Mur4 SINE Alu 35 145 -5 4 1457 252 0 0 0 chr9 114313142 114313170 -9763002 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 4 1457 725 237 112 10 chr9 114313244 114313440 -9762732 + ID_B1 SINE B4 1 216 -8 4 1457 186 143 0 0 chr9 114315109 114315144 -9761028 + (CCCTG)n Simple_repeat Simple_repeat 2 36 0 4 1457 1249 14 0 0 chr9 114316546 114316693 -9759479 + B1_Mm SINE Alu 1 147 0 4 1457 258 32 0 0 chr9 114316699 114316730 -9759442 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1457 484 194 106 10 chr9 114317262 114317366 -9758806 + ID_B1 SINE B4 98 211 -13 4 1457 359 193 33 58 chr9 114317789 114317800 -9758372 - PB1D7 SINE Alu -2 118 111 4 1457 234 0 0 0 chr9 114317800 114317826 -9758346 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1457 359 193 33 58 chr9 114317826 114317935 -9758237 - PB1D7 SINE Alu -10 110 1 4 1457 240 266 24 37 chr9 114317958 114318040 -9758132 + ID2 SINE ID 1 81 -2 4 1457 375 243 99 20 chr9 114318051 114318202 -9757970 + RSINE1 SINE B4 3 165 0 4 1457 308 317 216 11 chr9 114318487 114318672 -9757500 - L1M2 LINE L1 -2800 3343 3121 4 1457 364 224 93 9 chr9 114318672 114318780 -9757392 - B1_Mur2 SINE Alu 0 149 33 4 1457 429 20 0 0 chr9 114318901 114318951 -9757221 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1457 275 150 338 0 chr9 114318961 114319041 -9757131 - RSINE1 SINE B4 -36 129 23 4 1457 315 0 0 0 chr9 114319043 114319078 -9757094 + (TTA)n Simple_repeat Simple_repeat 1 35 0 4 1457 260 53 0 26 chr9 114320423 114320462 -9755710 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 4 1457 258 239 0 29 chr9 114320462 114320531 -9755641 + CT-rich Low_complexity Low_complexity 4 70 0 4 1457 574 240 32 69 chr9 114320561 114320749 -9755423 - B3A SINE B2 -16 182 2 4 1457 282 219 0 59 chr9 114321042 114321110 -9755062 - ORR1E LTR MaLR -17 362 299 4 1457 531 264 25 31 chr9 114321162 114321322 -9754850 - RSINE1 SINE B4 -4 161 3 4 1457 847 269 80 29 chr9 114321322 114321598 -9754574 - ORR1E LTR MaLR -69 290 1 4 1457 252 253 67 0 chr9 114322271 114322346 -9753826 - ERVL-B4-int LTR ERVL -3898 1816 1737 4 1457 224 59 0 29 chr9 114322508 114322543 -9753629 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 4 1457 986 95 0 0 chr9 114322543 114322691 -9753481 - B2_Mm2 SINE B2 -47 148 1 4 1457 370 281 41 16 chr9 114323228 114323351 -9752821 + RSINE1 SINE B4 11 136 -29 4 1457 277 353 0 0 chr9 114323390 114323492 -9752680 + (CA)n Simple_repeat Simple_repeat 2 103 0 4 1457 890 240 145 18 chr9 114323678 114323954 -9752218 - MTEa LTR MaLR -1 378 68 4 1457 1583 191 50 14 chr9 114323957 114324318 -9751854 - ORR1D1 LTR MaLR 0 374 1 4 1457 275 299 29 58 chr9 114324372 114324475 -9751697 - LTR16E1 LTR ERVL -1 537 438 4 1457 1054 58 0 28 chr9 114325316 114325459 -9750713 + B1_Mus2 SINE Alu 1 139 -8 4 1457 231 36 0 0 chr9 114325472 114325500 -9750672 + (TAA)n Simple_repeat Simple_repeat 2 29 0 4 1457 547 140 21 0 chr9 114325625 114325718 -9750454 - ID_B1 SINE B4 -9 215 121 4 1457 350 257 127 40 chr9 114326460 114326610 -9749562 + RSINE1 SINE B4 2 164 -1 4 1457 186 43 0 0 chr9 114327104 114327127 -9749045 + (G)n Simple_repeat Simple_repeat 1 23 0 4 1457 180 0 0 0 chr9 114327387 114327407 -9748765 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1457 733 247 30 0 chr9 114327445 114327611 -9748561 - B3 SINE B2 -37 179 9 4 1457 1107 117 0 0 chr9 114327624 114327804 -9748368 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1457 315 0 0 0 chr9 114327804 114327838 -9748334 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1457 385 198 87 77 chr9 114327853 114327957 -9748215 - PB1D7 SINE Alu -13 107 3 4 1457 733 118 24 8 chr9 114327981 114328125 -9748047 - B1_Mus2 SINE Alu -1 147 9 4 1457 324 245 30 10 chr9 114328135 114328234 -9747938 - ID_B1 SINE B4 -2 222 122 4 1457 38 0 0 0 chr9 114328259 114328297 -9747875 + AT_rich Low_complexity Low_complexity 1 38 0 4 1457 1074 88 0 0 chr9 114328297 114328445 -9747727 - B1_Mus1 SINE Alu 0 148 1 4 1457 229 284 12 47 chr9 114329016 114329101 -9747071 - 5S rRNA rRNA -32 89 8 4 1457 272 27 0 26 chr9 114329199 114329237 -9746935 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1457 327 202 95 11 chr9 114329243 114329338 -9746834 - RSINE1 SINE B4 -41 124 22 4 1457 1248 73 0 43 chr9 114329937 114330122 -9746050 + B2_Mm2 SINE B2 1 177 -18 4 1457 1035 182 23 23 chr9 114330250 114330464 -9745708 + B3 SINE B2 3 216 0 4 1457 265 262 94 12 chr9 114330498 114330583 -9745589 + PB1D7 SINE Alu 3 94 -26 4 1457 252 0 0 0 chr9 114331219 114331247 -9744925 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1457 362 243 7 0 chr9 114331364 114331504 -9744668 + (TG)n Simple_repeat Simple_repeat 2 142 0 4 1457 23 33 0 0 chr9 114331596 114331626 -9744546 + AT_rich Low_complexity Low_complexity 1 30 0 4 1457 821 154 12 21 chr9 114331741 114331921 -9744251 - B3 SINE B2 -14 181 7 4 1457 444 269 0 9 chr9 114331997 114332102 -9744070 + ID_B1 SINE B4 87 190 -34 4 1457 530 170 9 28 chr9 114332117 114332226 -9743946 - B1_Mus2 SINE Alu -1 146 40 4 1457 273 292 0 96 chr9 114332121 114332246 -9743926 - ID_B1 SINE B4 -2 222 110 4 1457 582 214 0 51 chr9 114332318 114332454 -9743718 - B3 SINE B2 -37 179 50 4 1457 639 232 96 6 chr9 114332453 114332609 -9743563 - ID_B1 SINE B4 -53 171 2 4 1457 297 0 0 0 chr9 114332966 114332999 -9743173 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1457 885 139 0 0 chr9 114333377 114333550 -9742622 + (TC)n Simple_repeat Simple_repeat 1 173 0 5 1457 681 258 68 0 chr9 114333563 114333753 -9742419 - ID_B1 SINE B4 -20 204 2 5 1457 877 26 9 0 chr9 114333873 114333988 -9742184 - B1_Mus2 SINE Alu 0 147 32 5 1457 24 32 0 0 chr9 114333997 114334028 -9742144 + AT_rich Low_complexity Low_complexity 1 31 0 5 1457 1060 44 73 0 chr9 114334028 114334165 -9742007 + B1_Mus1 SINE Alu 1 147 -1 5 1457 1050 217 5 0 chr9 114334200 114334403 -9741769 - B3 SINE B2 -5 211 8 5 1457 631 231 42 51 chr9 114334414 114334628 -9741544 - B3 SINE B2 -4 212 1 5 1457 740 208 57 11 chr9 114334659 114334834 -9741338 - B3A SINE B2 -15 183 1 5 1457 680 181 60 0 chr9 114334842 114334975 -9741197 + B3 SINE B2 75 215 -1 5 1457 260 228 0 112 chr9 114335673 114335762 -9740410 - B3 SINE B2 -11 205 127 5 1457 636 191 171 52 chr9 114335859 114335975 -9740197 - ID_B1 SINE B4 -8 216 77 5 1457 252 0 0 0 chr9 114335975 114336003 -9740169 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1457 636 191 171 52 chr9 114336003 114336079 -9740093 - ID SINE ID -148 76 1 5 1457 406 282 29 51 chr9 114336236 114336374 -9739798 + B4A SINE B4 13 147 -145 5 1457 281 266 54 27 chr9 114336832 114336944 -9739228 - PB1D7 SINE Alu -1 119 5 5 1457 620 286 27 27 chr9 114336946 114337133 -9739039 - ID_B1 SINE B4 -37 187 1 5 1457 506 234 128 22 chr9 114337133 114337299 -9738873 - B4A SINE B4 -60 232 48 5 1457 292 337 0 0 chr9 114337366 114337455 -9738717 - B1_Mur3 SINE Alu -60 89 1 5 1457 502 233 67 8 chr9 114337834 114337968 -9738204 + B1F SINE Alu 5 146 -3 5 1457 1077 160 24 28 chr9 114338189 114338401 -9737771 + URR1B DNA MER1_type 15 225 0 5 1457 1931 143 85 16 chr9 114338435 114338798 -9737374 - MTC LTR MaLR 0 421 34 5 1457 227 250 40 27 chr9 114338895 114338969 -9737203 - RSINE1 SINE B4 -10 155 81 5 1457 242 328 23 46 chr9 114339040 114339171 -9737001 - B4 SINE B4 -158 134 7 5 1457 309 281 22 22 chr9 114339700 114339791 -9736381 - MTEa LTR MaLR -14 365 275 5 1457 418 345 0 35 chr9 114339962 114340106 -9736066 - ID_B1 SINE B4 -5 219 81 5 1457 654 268 0 12 chr9 114340139 114340305 -9735867 + RSINE1 SINE B4 2 165 0 5 1457 434 250 22 36 chr9 114340407 114340514 -9735658 + B1_Mus1 SINE Alu 14 120 -28 5 1457 210 37 0 0 chr9 114340514 114340541 -9735631 + (G)n Simple_repeat Simple_repeat 1 27 0 5 1457 1136 44 0 0 chr9 114340541 114340678 -9735494 - B1_Mus2 SINE Alu -9 138 2 5 1457 434 250 22 36 chr9 114340678 114340706 -9735466 + B1_Mus1 SINE Alu 121 147 -1 5 1457 458 189 0 1 chr9 114340751 114340838 -9735334 + B3 SINE B2 1 87 -108 5 1457 315 71 0 0 chr9 114340838 114340880 -9735292 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1457 410 286 0 9 chr9 114340880 114340905 -9735267 + B2_Mm2 SINE B2 88 111 -84 5 1457 609 226 168 0 chr9 114340909 114341064 -9735108 + B3 SINE B2 3 183 -33 5 1457 399 41 0 0 chr9 114341065 114341114 -9735058 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1457 1143 29 0 21 chr9 114341127 114341270 -9734902 - B1_Mus2 SINE Alu -7 140 1 5 1457 226 269 59 15 chr9 114341293 114341361 -9734811 + ID_B1 SINE B4 147 217 -7 5 1457 289 310 13 101 chr9 114341373 114341531 -9734641 + B1F1 SINE Alu 5 148 -1 5 1457 640 157 19 0 chr9 114341535 114341643 -9734529 + B3A SINE B2 1 110 -88 5 1457 2224 89 6 3 chr9 114341645 114341961 -9734211 - ORR1A2 LTR MaLR 0 327 11 5 1457 334 313 50 0 chr9 114341978 114342077 -9734095 + B3 SINE B2 106 209 -7 5 1457 206 62 31 0 chr9 114342106 114342138 -9734034 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 5 1457 266 230 189 0 chr9 114342707 114342781 -9733391 - ID SINE ID -135 89 2 5 1457 261 329 110 37 chr9 114342782 114342808 -9733364 - MLT1A0 LTR MaLR -11 354 329 5 1457 781 204 14 0 chr9 114342808 114342950 -9733222 + B1F1 SINE Alu 1 144 -5 5 1457 261 329 110 37 chr9 114342950 114343141 -9733031 - MLT1A0 LTR MaLR -37 328 121 5 1457 663 232 0 0 chr9 114343253 114343391 -9732781 - RSINE1 SINE B4 -25 140 3 5 1457 484 280 59 45 chr9 114343907 114344109 -9732063 - ID_B1 SINE B4 -15 209 5 5 1457 402 243 189 27 chr9 114344190 114344210 -9731962 - B3A SINE B2 0 198 182 5 1457 279 133 0 0 chr9 114344210 114344255 -9731917 + (ATG)n Simple_repeat Simple_repeat 1 45 0 5 1457 402 243 189 27 chr9 114344255 114344382 -9731790 - B3A SINE B2 -17 181 28 5 1457 718 169 21 29 chr9 114344409 114344549 -9731623 - B1_Mur3 SINE Alu -9 140 2 5 1457 198 0 0 0 chr9 114344878 114344900 -9731272 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1457 182 33 0 62 chr9 114345108 114345140 -9731032 + (TTAGGG)n Simple_repeat Simple_repeat 4 33 0 5 1457 420 272 92 53 chr9 114345160 114345291 -9730881 - RLTR14 LTR ERV1 -15 367 235 5 1457 207 0 0 0 chr9 114345291 114345314 -9730858 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1457 420 272 92 53 chr9 114345314 114345388 -9730784 - RLTR14 LTR ERV1 -148 234 154 5 1457 328 269 56 91 chr9 114345473 114345505 -9730667 + B4 SINE B4 67 93 -199 5 1457 622 143 22 6 chr9 114345505 114345624 -9730548 + B1_Mur3 SINE Alu 2 119 -28 5 1457 306 212 15 0 chr9 114345651 114345717 -9730455 - ID4_ SINE ID -15 68 2 5 1457 441 310 41 21 chr9 114345722 114345867 -9730305 - B1F1 SINE Alu 0 149 2 5 1457 661 325 47 39 chr9 114346026 114346240 -9729932 - MER2 DNA MER2_type -64 281 66 5 1457 835 209 13 89 chr9 114346240 114346314 -9729858 - ID_B1 SINE B4 -2 222 156 5 1457 1221 27 0 0 chr9 114346314 114346461 -9729711 + B1_Mm SINE Alu 1 147 0 5 1457 835 209 13 89 chr9 114346461 114346622 -9729550 - ID_B1 SINE B4 -69 155 5 5 1457 661 325 47 39 chr9 114346622 114346686 -9729486 - MER2 DNA MER2_type -280 65 1 5 1457 1093 75 0 7 chr9 114347243 114347391 -9728781 + B1_Mus2 SINE Alu 1 147 0 5 1457 645 202 33 104 chr9 114347584 114347766 -9728406 - B4 SINE B4 0 292 124 5 1457 438 260 30 30 chr9 114347816 114347951 -9728221 - RSINE1 SINE B4 -30 135 1 5 1457 1133 88 71 0 chr9 114347960 114348142 -9728030 - B2_Mm2 SINE B2 0 195 1 5 1457 607 299 86 39 chr9 114348164 114348502 -9727670 - L1MB7 LINE L1 -36 6148 5795 5 1457 327 200 0 26 chr9 114348502 114348579 -9727593 + ID4 SINE ID 2 76 -7 5 1457 457 254 167 0 chr9 114348713 114348839 -9727333 + B1_Mur2 SINE Alu 1 147 -2 5 1457 1243 36 6 12 chr9 114348860 114349029 -9727143 - B2_Mm2 SINE B2 -3 192 25 5 1457 261 301 180 67 chr9 114349058 114349131 -9727041 + B4 SINE B4 33 202 -90 5 1457 479 137 168 0 chr9 114349131 114349226 -9726946 + B1_Mur3 SINE Alu 32 142 -7 5 1457 480 277 13 54 chr9 114349269 114349418 -9726754 + B4 SINE B4 85 227 -65 5 1457 564 283 55 7 chr9 114349419 114349565 -9726607 + RSINE1 SINE B4 3 155 -10 5 1457 358 304 95 9 chr9 114350706 114350822 -9725350 + ID_B1 SINE B4 99 224 0 5 1457 234 0 0 0 chr9 114351031 114351057 -9725115 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1457 365 264 317 36 chr9 114351123 114351336 -9724836 - MTEa LTR MaLR 0 379 107 5 1457 764 198 139 6 chr9 114351719 114351892 -9724280 + B3 SINE B2 20 215 -1 5 1457 428 194 32 0 chr9 114351890 114351983 -9724189 - ID_B1 SINE B4 -62 162 67 5 1457 419 126 410 0 chr9 114352919 114353014 -9723158 - PB1D9 SINE Alu -8 142 9 5 1457 268 268 159 9 chr9 114353033 114353146 -9723026 + ID_B1 SINE B4 70 199 -25 5 1457 26 30 0 0 chr9 114353216 114353249 -9722923 + AT_rich Low_complexity Low_complexity 1 33 0 5 1457 1211 41 0 0 chr9 114353260 114353407 -9722765 + B1_Mus2 SINE Alu 1 147 0 5 1457 516 278 49 13 chr9 114353434 114353596 -9722576 - B3A SINE B2 -33 165 2 5 1457 1244 92 11 16 chr9 114353672 114353859 -9722313 - B2_Mm1t SINE B2 -6 187 2 5 1457 218 32 32 0 chr9 114353872 114353903 -9722269 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1457 1021 54 0 0 chr9 114353908 114354038 -9722134 - B1_Mm SINE Alu -17 130 1 5 1457 357 216 124 0 chr9 114354084 114354181 -9721991 - B4A SINE B4 -3 289 181 5 1457 283 221 52 0 chr9 114354213 114354290 -9721882 - B4A SINE B4 -197 95 15 5 1457 204 40 0 0 chr9 114354312 114354337 -9721835 + (TTA)n Simple_repeat Simple_repeat 2 26 0 5 1457 505 244 147 7 chr9 114354773 114354909 -9721263 + ID_B1 SINE B4 27 181 -43 5 1457 394 292 136 34 chr9 114354921 114355098 -9721074 + ID_B1 SINE B4 1 195 -29 5 1457 548 267 6 76 chr9 114355603 114355752 -9720420 + B1F1 SINE Alu 1 138 -11 5 1457 513 271 15 29 chr9 114355870 114356007 -9720165 + RSINE1 SINE B4 5 139 -26 5 1457 324 0 0 0 chr9 114356114 114356150 -9720022 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1457 632 254 8 0 chr9 114356334 114356468 -9719704 + RSINE1 SINE B4 2 136 -29 5 1457 323 165 93 5 chr9 114356508 114356610 -9719562 - PB1D7 SINE Alu 0 120 1 5 1457 263 329 83 56 chr9 114356610 114356724 -9719448 - ID_B1 SINE B4 -1 223 2 5 1457 1190 28 0 0 chr9 114357236 114357378 -9718794 - B1_Mus1 SINE Alu -6 142 1 5 1457 1033 71 0 41 chr9 114357476 114357623 -9718549 + B1_Mur4 SINE Alu 1 141 -9 5 1457 186 43 0 0 chr9 114357623 114357646 -9718526 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1457 261 83 0 0 chr9 114357648 114357684 -9718488 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1457 195 42 0 0 chr9 114357684 114357707 -9718465 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 1457 2003 124 9 6 chr9 114357726 114358043 -9718129 - ORR1A1 LTR MaLR -7 339 22 5 1457 546 310 118 0 chr9 114358387 114358632 -9717540 - B4A SINE B4 -17 275 2 5 1457 1616 31 0 0 chr9 114358856 114359047 -9717125 - B2_Mm1t SINE B2 -1 192 2 6 1457 858 191 0 7 chr9 114359473 114359621 -9716551 + B1_Mus2 SINE Alu 1 147 0 6 1457 948 195 115 0 chr9 114359804 114360004 -9716168 + ID_B1 SINE B4 2 224 0 6 1457 336 293 86 8 chr9 114360375 114360492 -9715680 - RSINE1 SINE B4 -38 127 2 6 1457 225 333 78 105 chr9 114361165 114361212 -9714960 + B4A SINE B4 43 201 -91 6 1457 555 270 14 7 chr9 114361212 114361350 -9714822 + B1F SINE Alu 6 144 -5 6 1457 446 154 65 37 chr9 114361379 114361487 -9714685 + ID_B1 SINE B4 107 217 -7 6 1457 901 163 38 151 chr9 114361943 114362012 -9714160 + B3 SINE B2 1 44 -172 6 1457 669 209 36 0 chr9 114362012 114362151 -9714021 - B1_Mur3 SINE Alu -5 144 1 6 1457 901 163 38 151 chr9 114362151 114362320 -9713852 + B3 SINE B2 45 212 -4 6 1457 833 118 47 0 chr9 114362329 114362456 -9713716 + B1_Mur1 SINE Alu 5 137 -12 6 1457 186 43 0 0 chr9 114362457 114362480 -9713692 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1457 663 185 13 40 chr9 114362559 114362698 -9713474 + B1_Mus1 SINE Alu 1 136 -12 6 1457 629 36 0 24 chr9 114362698 114362783 -9713389 + (GGAA)n Simple_repeat Simple_repeat 1 83 0 6 1457 663 185 13 40 chr9 114362783 114362795 -9713377 + B1_Mus1 SINE Alu 137 148 0 6 1457 597 241 131 20 chr9 114362861 114363060 -9713112 + ID_B1 SINE B4 1 221 -3 6 1457 273 197 0 0 chr9 114363062 114363128 -9713044 + GA-rich Low_complexity Low_complexity 1 66 0 6 1457 811 223 98 5 chr9 114363486 114363689 -9712483 + ID_B1 SINE B4 3 224 0 6 1457 372 282 42 0 chr9 114364157 114364299 -9711873 + B1F SINE Alu 1 148 -1 6 1457 679 256 47 5 chr9 114364371 114364563 -9711609 + B3 SINE B2 3 202 -14 6 1457 300 211 454 15 chr9 114364571 114364701 -9711471 + ID_B1 SINE B4 31 217 -7 6 1457 215 152 62 42 chr9 114364661 114364709 -9711463 + PB1D7 SINE Alu 71 119 -1 6 1457 758 182 171 0 chr9 114364910 114365086 -9711086 - B3 SINE B2 -10 206 1 6 1457 366 80 0 0 chr9 114365129 114365179 -9710993 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1457 473 179 0 0 chr9 114365181 114365265 -9710907 - RSINE1 SINE B4 -79 86 3 6 1457 319 322 68 0 chr9 114366071 114366189 -9709983 + B4A SINE B4 71 196 -96 6 1457 425 248 27 6 chr9 114366090 114366205 -9709967 + B1F1 SINE Alu 6 116 -1 6 1457 372 277 60 20 chr9 114366224 114366375 -9709797 + RSINE1 SINE B4 1 157 -8 6 1457 613 288 0 0 chr9 114366500 114366639 -9709533 - ID_B1 SINE B4 -2 222 84 6 1457 960 206 45 5 chr9 114366750 114366950 -9709222 + B3 SINE B2 1 208 -8 6 1457 706 310 5 5 chr9 114366967 114367178 -9708994 + B4 SINE B4 81 291 -1 6 1457 430 106 0 56 chr9 114367377 114367467 -9708705 + L1Md_F3 LINE L1 6500 6584 0 6 1457 24 0 0 0 chr9 114367489 114367513 -9708659 + AT_rich Low_complexity Low_complexity 1 24 0 6 1457 195 100 0 0 chr9 114367591 114367621 -9708551 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 6 1457 253 206 40 14 chr9 114367878 114367952 -9708220 + ID_B1 SINE B4 79 154 -70 6 1457 331 169 24 72 chr9 114367935 114368018 -9708154 + RSINE1 SINE B4 58 136 -29 6 1457 438 20 0 0 chr9 114368021 114368072 -9708100 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1457 1103 62 14 0 chr9 114368089 114368235 -9707937 + B1_Mus1 SINE Alu 1 148 0 6 1457 267 203 27 13 chr9 114368248 114368314 -9707858 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1457 267 31 0 0 chr9 114368314 114368346 -9707826 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1457 267 203 27 13 chr9 114368346 114368354 -9707818 + (TA)n Simple_repeat Simple_repeat 2 9 0 6 1457 317 360 0 0 chr9 114368372 114368483 -9707689 + PB1D10 SINE Alu 1 111 -6 6 1457 488 112 0 59 chr9 114368969 114369054 -9707118 - B1_Mus1 SINE Alu -58 90 11 6 1457 325 221 12 94 chr9 114368980 114369065 -9707107 - MT2B LTR ERVL -362 239 162 6 1457 247 283 0 157 chr9 114369086 114369220 -9706952 - B1_Mus1 SINE Alu -25 123 11 6 1457 591 274 101 0 chr9 114369100 114369268 -9706904 - ID_B1 SINE B4 0 224 40 6 1457 23 33 0 0 chr9 114369318 114369348 -9706824 + AT_rich Low_complexity Low_complexity 1 30 0 6 1457 330 26 0 0 chr9 114369400 114369439 -9706733 + (TATG)n Simple_repeat Simple_repeat 2 40 0 6 1457 1222 14 0 7 chr9 114369503 114369650 -9706522 - B1_Mm SINE Alu 0 147 2 6 1457 635 221 103 22 chr9 114370114 114370299 -9705873 - ID_B1 SINE B4 -22 202 3 6 1457 312 167 33 0 chr9 114370307 114370367 -9705805 - PB1D7 SINE Alu 0 120 59 6 1457 259 234 0 30 chr9 114370516 114370582 -9705590 + (TATG)n Simple_repeat Simple_repeat 4 67 0 6 1457 701 264 93 19 chr9 114370608 114370867 -9705305 - B4A SINE B4 -14 278 1 6 1457 492 18 0 0 chr9 114371178 114371235 -9704937 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1457 232 306 0 56 chr9 114371324 114371414 -9704758 + RLTR25B LTR ERVK 414 498 -530 6 1457 349 268 31 10 chr9 114371363 114371461 -9704711 + B1_Mus2 SINE Alu 48 147 0 6 1457 204 200 0 0 chr9 114372065 114372100 -9704072 + (CACCC)n Simple_repeat Simple_repeat 1 35 0 6 1457 508 233 105 47 chr9 114372411 114372582 -9703590 + B3A SINE B2 2 182 -16 6 1457 32 20 0 20 chr9 114372639 114372670 -9703502 + AT_rich Low_complexity Low_complexity 1 31 0 6 1457 726 136 17 0 chr9 114372670 114372788 -9703384 + PB1D9 SINE Alu 1 120 0 6 1457 32 20 0 20 chr9 114372788 114372806 -9703366 + AT_rich Low_complexity Low_complexity 1 18 0 6 1457 775 207 0 26 chr9 114372819 114372973 -9703199 + B1_Mur4 SINE Alu 1 150 0 6 1457 443 247 58 115 chr9 114373715 114373889 -9702283 - RSINE1 SINE B4 0 165 2 6 1457 482 232 10 0 chr9 114373930 114374029 -9702143 - ID_B1 SINE B4 -2 222 123 6 1457 234 127 70 35 chr9 114374348 114374405 -9701767 + B1F SINE Alu 91 149 0 6 1457 256 262 43 58 chr9 114375087 114375225 -9700947 + RMER12 LTR ERVK 720 855 -467 6 1457 270 167 0 0 chr9 114375234 114375294 -9700878 + (TATG)n Simple_repeat Simple_repeat 4 63 0 6 1457 524 246 92 0 chr9 114375302 114375444 -9700728 + ID_B1 SINE B4 54 208 -16 6 1457 204 40 0 0 chr9 114375558 114375583 -9700589 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1457 432 250 40 10 chr9 114375902 114376003 -9700169 + B3 SINE B2 104 207 -9 6 1457 736 153 92 0 chr9 114376676 114376807 -9699365 + B1_Mur3 SINE Alu 1 143 -6 6 1457 577 186 2 3 chr9 114376914 114377033 -9699139 + B3 SINE B2 1 118 -80 6 1457 336 299 120 40 chr9 114377033 114377064 -9699108 + RSINE1 SINE B4 2 163 -2 6 1457 255 146 0 0 chr9 114377084 114377132 -9699040 - B1_Mur1 SINE Alu -1 148 101 6 1457 530 332 61 35 chr9 114377196 114377288 -9698884 + B4 SINE B4 3 105 -187 6 1457 252 0 0 0 chr9 114377288 114377316 -9698856 + (TGG)n Simple_repeat Simple_repeat 2 29 0 6 1457 530 332 61 35 chr9 114377316 114377454 -9698718 + B4 SINE B4 106 239 -53 6 1457 801 219 48 34 chr9 114377969 114378177 -9697995 - B3 SINE B2 -4 212 2 6 1457 183 204 0 0 chr9 114378219 114378273 -9697899 + T-rich Low_complexity Low_complexity 1 54 0 6 1457 924 49 0 16 chr9 114378274 114378399 -9697773 - B1_Mus1 SINE Alu -1 147 25 6 1457 737 209 14 0 chr9 114378933 114379072 -9697100 - B1_Mur2 SINE Alu -1 148 8 6 1457 299 338 44 101 chr9 114379072 114379090 -9697082 - B4 SINE B4 -67 224 77 6 1457 453 218 54 9 chr9 114379130 114379241 -9696931 + PB1D9 SINE Alu 5 120 0 6 1457 849 150 249 0 chr9 114379265 114379438 -9696734 + B3 SINE B2 1 216 0 6 1457 23 33 0 0 chr9 114379855 114379885 -9696287 + AT_rich Low_complexity Low_complexity 1 30 0 6 1457 253 170 35 5 chr9 114379907 114379974 -9696198 + B1_Mm SINE Alu 49 146 -1 6 1457 444 297 16 0 chr9 114380031 114380159 -9696013 + B1F2 SINE Alu 1 130 -19 6 1457 261 209 41 132 chr9 114380170 114380291 -9695881 + MT2B LTR ERVL 155 264 -337 6 1457 655 141 16 32 chr9 114380198 114380323 -9695849 + B1_Mus1 SINE Alu 24 146 -2 6 1457 358 333 0 10 chr9 114380544 114380641 -9695531 + PB1D10 SINE Alu 1 96 -21 6 1457 246 273 0 15 chr9 114380708 114380775 -9695397 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 6 1457 705 240 90 34 chr9 114380785 114381052 -9695120 - B4A SINE B4 -8 284 3 6 1457 275 192 12 110 chr9 114381734 114381816 -9694356 + B1_Mus1 SINE Alu 23 96 -52 6 1457 961 46 114 0 chr9 114381858 114381989 -9694183 + B1_Mus2 SINE Alu 2 147 0 6 1457 331 269 11 11 chr9 114382404 114382498 -9693674 - B1F1 SINE Alu -51 98 5 6 1457 582 54 0 0 chr9 114382879 114382953 -9693219 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 1457 482 0 17 0 chr9 114383788 114383846 -9692326 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1457 238 172 29 59 chr9 114383846 114383914 -9692258 + (TATG)n Simple_repeat Simple_repeat 4 69 0 6 1457 748 237 49 54 chr9 114384037 114384138 -9692034 + ID_B1 SINE B4 1 96 -128 6 1457 1367 172 93 65 chr9 114384138 114384537 -9691635 - RMER17C LTR ERVK 0 410 1 6 1457 748 237 49 54 chr9 114384537 114384658 -9691514 + ID_B1 SINE B4 97 222 -2 6 1457 364 289 14 56 chr9 114384781 114384924 -9691248 - B4A SINE B4 -150 142 6 6 1457 785 150 47 29 chr9 114384931 114385103 -9691069 - B2_Mm2 SINE B2 -19 176 2 6 1457 320 235 123 0 chr9 114385105 114385186 -9690986 - ID_B1 SINE B4 0 224 134 6 1457 1013 23 8 0 chr9 114385199 114385330 -9690842 + B1_Mm SINE Alu 16 147 0 7 1457 183 42 0 0 chr9 114385331 114385355 -9690817 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1457 288 289 48 0 chr9 114385361 114385444 -9690728 - ID SINE ID -137 87 1 6 1457 943 119 7 0 chr9 114385838 114385981 -9690191 - B1_Mur4 SINE Alu -1 149 6 7 1457 466 269 13 65 chr9 114385985 114386140 -9690032 + ID_B1 SINE B4 11 157 -67 7 1457 654 349 63 46 chr9 114386343 114386432 -9689740 - MTD LTR MaLR 0 419 331 7 1457 1066 83 0 14 chr9 114386432 114386578 -9689594 + B1_Mus1 SINE Alu 2 145 -3 7 1457 246 32 0 0 chr9 114386578 114386609 -9689563 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1457 654 349 63 46 chr9 114386609 114386930 -9689242 - MTD LTR MaLR -89 330 2 7 1457 1716 185 142 7 chr9 114387255 114387723 -9688449 + RMER1B Other Other 409 1057 -9 7 1457 207 69 0 0 chr9 114387724 114387753 -9688419 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1457 981 238 9 9 chr9 114387979 114388195 -9687977 - ID_B1 SINE B4 0 224 9 7 1457 539 156 17 84 chr9 114388249 114388368 -9687804 - PB1D9 SINE Alu -1 119 9 7 1457 215 210 11 138 chr9 114388284 114388378 -9687794 - B4A SINE B4 -124 168 87 7 1457 668 222 0 43 chr9 114388926 114389067 -9687105 + ID_B1 SINE B4 90 224 0 7 1457 295 266 0 15 chr9 114389071 114389136 -9687036 + PB1D7 SINE Alu 1 64 -56 7 1457 213 361 47 24 chr9 114389150 114389235 -9686937 + L2b LINE L2 3289 3375 0 7 1457 441 0 0 0 chr9 114389697 114389746 -9686426 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1457 737 259 59 25 chr9 114389746 114389948 -9686224 - ID_B1 SINE B4 -13 211 3 7 1457 377 262 150 8 chr9 114390143 114390246 -9685926 + B4 SINE B4 86 199 -93 7 1457 297 89 0 0 chr9 114390246 114390291 -9685881 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1457 377 262 150 8 chr9 114390291 114390314 -9685858 + B4 SINE B4 200 229 -63 7 1457 609 234 46 15 chr9 114390315 114390445 -9685727 + RSINE1 SINE B4 7 140 -25 7 1457 261 0 0 0 chr9 114390456 114390485 -9685687 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1457 530 245 6 114 chr9 114390509 114390675 -9685497 - B3A SINE B2 -1 197 50 7 1457 278 143 20 0 chr9 114390712 114390761 -9685411 + B1_Mus2 SINE Alu 97 146 -1 7 1457 872 229 167 8 chr9 114391298 114391549 -9684623 + B4 SINE B4 2 292 0 7 1457 1083 74 15 0 chr9 114391627 114391762 -9684410 + B1_Mus1 SINE Alu 2 138 -10 7 1457 333 0 0 0 chr9 114391762 114391799 -9684373 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1457 937 102 80 0 chr9 114392054 114392191 -9683981 - B1_Mus1 SINE Alu 0 148 1 7 1457 1090 219 180 10 chr9 114392482 114392782 -9683390 + MTEb LTR MaLR 21 371 -8 7 1457 342 200 133 56 chr9 114392876 114392966 -9683206 + B1F SINE Alu 46 142 -7 7 1457 593 250 0 39 chr9 114392973 114393102 -9683070 + RSINE1 SINE B4 2 125 -40 7 1457 279 53 70 0 chr9 114393111 114393168 -9683004 + (TTTTTG)n Simple_repeat Simple_repeat 6 66 0 7 1457 1247 20 7 20 chr9 114393168 114393317 -9682855 - B1_Mm SINE Alu 0 147 1 7 1457 33 43 0 0 chr9 114393383 114393430 -9682742 + AT_rich Low_complexity Low_complexity 1 47 0 7 1457 714 170 35 14 chr9 114393442 114393585 -9682587 + B1_Mur2 SINE Alu 1 146 -3 7 1457 267 262 12 36 chr9 114393817 114393900 -9682272 + ID4 SINE ID 3 83 0 7 1457 411 313 115 66 chr9 114393913 114394156 -9682016 - ORR1E LTR MaLR -41 318 64 7 1457 400 212 59 0 chr9 114394237 114394322 -9681850 - ORR1E LTR MaLR -269 90 1 7 1457 231 114 0 0 chr9 114394616 114394651 -9681521 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1457 1540 57 0 25 chr9 114394727 114394925 -9681247 - B2_Mm1a SINE B2 0 193 1 7 1457 822 38 0 0 chr9 114394958 114395064 -9681108 + (TG)n Simple_repeat Simple_repeat 1 106 0 7 1457 642 164 124 6 chr9 114395068 114395200 -9680972 - RSINE1 SINE B4 -18 147 3 7 1457 568 296 20 24 chr9 114395214 114395393 -9680779 - ID_B1 SINE B4 -5 219 43 7 1457 455 224 36 27 chr9 114395675 114395785 -9680387 + PB1D10 SINE Alu 1 111 -6 7 1457 210 37 0 0 chr9 114396217 114396244 -9679928 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1457 359 164 15 0 chr9 114396251 114396318 -9679854 - ID_B1 SINE B4 -21 203 136 7 1457 617 268 38 0 chr9 114396319 114396476 -9679696 + RSINE1 SINE B4 3 165 0 7 1457 549 188 0 0 chr9 114396489 114396633 -9679539 + (CA)n Simple_repeat Simple_repeat 2 145 0 7 1457 320 206 29 14 chr9 114396979 114397048 -9679124 + RSINE1 SINE B4 42 111 -54 7 1457 258 371 85 27 chr9 114397083 114397343 -9678829 - LTR16A LTR ERVL -21 430 156 7 1457 952 176 0 0 chr9 114397782 114397930 -9678242 + B1_Mus1 SINE Alu 1 148 0 7 1457 237 65 0 0 chr9 114397934 114397965 -9678207 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1457 249 159 0 0 chr9 114398132 114398176 -9677996 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 7 1457 284 0 28 0 chr9 114398265 114398301 -9677871 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1457 535 254 97 14 chr9 114398301 114398437 -9677735 - RSINE1 SINE B4 -14 151 2 7 1457 317 32 0 88 chr9 114398656 114398724 -9677448 + L1_Mus3 LINE L1 6577 6638 0 7 1457 438 199 62 56 chr9 114398857 114399001 -9677171 + B1F SINE Alu 3 147 -2 7 1457 1278 136 56 0 chr9 114399001 114399199 -9676973 + B3 SINE B2 1 209 -7 7 1457 1257 47 0 0 chr9 114399246 114399394 -9676778 + B1_Mus1 SINE Alu 1 148 0 7 1457 186 50 75 0 chr9 114399394 114399434 -9676738 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 7 1457 428 215 108 0 chr9 114399506 114399599 -9676573 - B1_Mus2 SINE Alu -40 107 5 7 1457 250 331 63 46 chr9 114399511 114399685 -9676487 - MT2B LTR ERVL -344 257 81 7 1457 832 143 23 0 chr9 114399824 114399957 -9676215 - B1_Mur1 SINE Alu -5 144 9 7 1457 273 57 0 0 chr9 114399975 114400010 -9676162 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1457 677 104 0 0 chr9 114400013 114400109 -9676063 - B1_Mus2 SINE Alu -11 136 41 7 1457 959 49 7 21 chr9 114400135 114400280 -9675892 + (GAA)n Simple_repeat Simple_repeat 3 145 0 7 1457 219 25 0 70 chr9 114400381 114400424 -9675748 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 7 1457 293 348 11 11 chr9 114400425 114400518 -9675654 - PB1D10 SINE Alu -14 103 11 7 1457 1690 21 0 0 chr9 114402434 114402624 -9673548 - B2_Mm1a SINE B2 -2 191 2 7 1457 700 179 0 0 chr9 114402744 114402861 -9673311 + B1_Mur1 SINE Alu 27 143 -6 7 1457 888 202 82 43 chr9 114402871 114403078 -9673094 + B3 SINE B2 2 216 0 7 1457 330 297 27 176 chr9 114403114 114403213 -9672959 + RSINE1 SINE B4 4 97 -68 7 1457 1677 31 0 0 chr9 114403213 114403404 -9672768 + B2_Mm1a SINE B2 2 192 -1 7 1457 330 297 27 176 chr9 114403404 114403492 -9672680 + RSINE1 SINE B4 98 163 -2 7 1457 241 167 29 29 chr9 114403516 114403531 -9672641 + (CAAA)n Simple_repeat Simple_repeat 3 16 0 7 1457 832 154 73 0 chr9 114403531 114403667 -9672505 + B1_Mus2 SINE Alu 1 146 -1 7 1457 1324 14 0 0 chr9 114403669 114403816 -9672356 + B1_Mus2 SINE Alu 1 147 0 7 1457 241 167 29 29 chr9 114403816 114403865 -9672307 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 7 1457 498 273 94 61 chr9 114404181 114404458 -9671714 - B4A SINE B4 -6 286 1 7 1457 411 241 57 49 chr9 114404702 114404824 -9671348 + ID_B1 SINE B4 94 216 -8 7 1457 427 250 60 43 chr9 114404865 114404982 -9671190 + RSINE1 SINE B4 46 164 -1 7 1457 976 216 14 40 chr9 114405258 114405480 -9670692 + B3 SINE B2 1 216 0 7 1457 207 0 0 0 chr9 114405482 114405505 -9670667 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 7 1457 183 156 0 0 chr9 114405760 114405792 -9670380 + A-rich Low_complexity Low_complexity 1 32 0 7 1457 593 211 128 7 chr9 114405873 114406022 -9670150 + ID_B1 SINE B4 80 244 -48 7 1457 254 291 13 0 chr9 114406089 114406168 -9670004 + ID4_ SINE ID 2 81 -2 7 1457 229 147 31 21 chr9 114406238 114406335 -9669837 + A-rich Low_complexity Low_complexity 1 98 0 7 1457 331 254 138 8 chr9 114406374 114406497 -9669675 + B3 SINE B2 73 211 -5 7 1457 733 232 104 6 chr9 114406696 114406869 -9669303 + B3 SINE B2 27 216 0 7 1457 475 261 25 25 chr9 114406875 114406993 -9669179 - PB1D9 SINE Alu -2 118 1 7 1457 226 162 88 150 chr9 114406931 114407011 -9669161 + B2_Mm1a SINE B2 105 179 -14 7 1457 1074 58 58 0 chr9 114407013 114407151 -9669021 - B1_Mus2 SINE Alu 0 147 2 7 1457 180 0 0 0 chr9 114407196 114407216 -9668956 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1457 246 299 156 52 chr9 114407732 114407905 -9668267 - MER74C LTR ERVL -149 311 121 7 1457 1386 113 0 5 chr9 114408132 114408327 -9667845 + B2_Mm2 SINE B2 2 195 0 7 1457 514 263 123 5 chr9 114408357 114408544 -9667628 + B3 SINE B2 2 210 -6 7 1457 537 221 50 29 chr9 114408553 114408693 -9667479 - B1_Mur2 SINE Alu -6 143 1 7 1457 553 106 35 0 chr9 114408918 114409003 -9667169 - B1_Mur4 SINE Alu 0 150 63 7 1457 516 252 0 0 chr9 114409524 114409635 -9666537 + PB1D9 SINE Alu 5 115 -5 7 1457 271 281 90 109 chr9 114409654 114409810 -9666362 - RSINE1 SINE B4 -10 155 3 7 1457 554 175 122 26 chr9 114409950 114410097 -9666075 + B3 SINE B2 3 150 -43 7 1457 501 17 0 0 chr9 114410097 114410155 -9666017 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1457 299 264 116 52 chr9 114410155 114410179 -9665993 + B2_Mm1a SINE B2 151 184 -9 7 1457 225 179 284 0 chr9 114410185 114410252 -9665920 + PB1D9 SINE Alu 23 108 -12 7 1457 550 200 9 43 chr9 114411402 114411517 -9664655 - B1_Mus2 SINE Alu -8 139 29 8 1457 1570 53 5 0 chr9 114411580 114411770 -9664402 - B2_Mm1a SINE B2 -1 192 2 8 1457 1940 172 89 76 chr9 114411917 114412376 -9663796 + RMER15 LTR ERVL 108 572 -3 8 1457 853 86 8 0 chr9 114412553 114412670 -9663502 - B1_Mus2 SINE Alu -29 118 1 8 1457 1650 21 16 0 chr9 114412943 114413133 -9663039 + B2_Mm1a SINE B2 1 193 0 8 1457 321 47 0 0 chr9 114413220 114413263 -9662909 + (A)n Simple_repeat Simple_repeat 1 43 0 8 1457 262 269 106 11 chr9 114413379 114413473 -9662699 + B1F1 SINE Alu 3 105 -44 8 1457 241 224 0 20 chr9 114413464 114413514 -9662658 + B3 SINE B2 107 155 -61 8 1457 351 0 0 0 chr9 114413553 114413592 -9662580 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1457 192 40 0 0 chr9 114413850 114413875 -9662297 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 8 1457 381 198 36 36 chr9 114414524 114414608 -9661564 + PB1D9 SINE Alu 36 119 -1 8 1457 268 208 0 0 chr9 114414672 114414720 -9661452 - RSINE1 SINE B4 -115 50 3 8 1457 1331 102 37 0 chr9 114415154 114415341 -9660831 - B2_Mm2 SINE B2 0 195 2 8 1457 297 221 195 0 chr9 114415377 114415454 -9660718 - B3 SINE B2 -24 192 101 8 1457 464 214 56 46 chr9 114415523 114415631 -9660541 - PB1D10 SINE Alu -2 115 7 8 1457 431 252 71 9 chr9 114415938 114416050 -9660122 - RSINE1 SINE B4 -1 164 46 8 1457 29 0 0 0 chr9 114416564 114416593 -9659579 + AT_rich Low_complexity Low_complexity 1 29 0 8 1457 306 87 0 0 chr9 114418380 114418426 -9657746 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1457 192 97 0 0 chr9 114419709 114419740 -9656432 + (G)n Simple_repeat Simple_repeat 1 31 0 8 1457 210 71 0 0 chr9 114420364 114420392 -9655780 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1457 28 0 0 0 chr9 114420392 114420420 -9655752 + AT_rich Low_complexity Low_complexity 1 28 0 8 1457 198 0 0 0 chr9 114421560 114421582 -9654590 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1457 213 250 0 0 chr9 114421626 114421674 -9654498 + A-rich Low_complexity Low_complexity 1 48 0 8 1457 22 35 0 0 chr9 114423524 114423553 -9652619 + AT_rich Low_complexity Low_complexity 1 29 0 8 1457 1332 62 28 6 chr9 114423553 114423730 -9652442 - B2_Mm2 SINE B2 -14 181 1 8 1457 251 243 133 13 chr9 114423734 114423809 -9652363 - B3A SINE B2 -12 186 103 8 1457 288 317 0 103 chr9 114423926 114424042 -9652130 - PB1D9 SINE Alu -7 113 10 8 1458 246 32 0 0 chr9 114426055 114426086 -9650086 + (CCCTG)n Simple_repeat Simple_repeat 2 32 0 8 1458 370 368 96 0 chr9 114426396 114426562 -9649610 - B3A SINE B2 -16 182 1 8 1458 2127 62 33 87 chr9 114426580 114426858 -9649314 + ORR1A2 LTR MaLR 5 285 -42 8 1458 1207 61 0 0 chr9 114426858 114427006 -9649166 + B1_Mus1 SINE Alu 1 148 0 8 1458 2127 62 33 87 chr9 114427006 114427060 -9649112 + ORR1A2 LTR MaLR 286 319 -8 8 1458 509 181 41 130 chr9 114427246 114427392 -9648780 + B1_Mur2 SINE Alu 2 134 -15 8 1458 210 219 0 0 chr9 114427447 114427488 -9648684 - B1_Mus2 SINE Alu -11 136 96 8 1458 242 204 0 20 chr9 114427489 114427539 -9648633 + GA-rich Low_complexity Low_complexity 3 51 0 8 1458 439 210 118 47 chr9 114427857 114427945 -9648227 - MTD LTR MaLR -289 132 43 8 1458 597 14 0 0 chr9 114427945 114428015 -9648157 + (TC)n Simple_repeat Simple_repeat 1 70 0 8 1458 439 210 128 20 chr9 114428015 114428058 -9648114 - MTD LTR MaLR -377 42 1 8 1458 261 109 0 0 chr9 114428181 114428227 -9647945 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1458 260 253 108 0 chr9 114428585 114428668 -9647504 - B3 SINE B2 -6 210 119 8 1458 229 244 227 23 chr9 114428919 114429007 -9647165 + B3 SINE B2 96 201 -15 8 1458 311 212 329 0 chr9 114429070 114429155 -9647017 + RSINE1 SINE B4 17 129 -36 8 1458 270 0 0 0 chr9 114429164 114429194 -9646978 + (CCA)n Simple_repeat Simple_repeat 2 31 0 8 1458 926 9 0 26 chr9 114429406 114429523 -9646649 - B1_Mm SINE Alu 0 147 34 8 1458 360 214 10 82 chr9 114429444 114429541 -9646631 - MT2B LTR ERVL -337 264 175 8 1458 21 0 0 0 chr9 114429621 114429642 -9646530 + AT_rich Low_complexity Low_complexity 1 21 0 8 1458 477 151 321 0 chr9 114429642 114429748 -9646424 + B1_Mur4 SINE Alu 11 150 0 8 1458 316 215 46 0 chr9 114429748 114429813 -9646359 + L1MEg LINE L1 1883 1950 -4134 8 1458 1495 58 32 0 chr9 114429928 114430117 -9646055 + B2_Mm2 SINE B2 1 195 0 8 1458 761 141 66 0 chr9 114430385 114430506 -9645666 + B3 SINE B2 2 130 -86 8 1458 29 0 0 0 chr9 114430546 114430575 -9645597 + AT_rich Low_complexity Low_complexity 1 29 0 8 1458 285 167 0 0 chr9 114430580 114430634 -9645538 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 8 1458 1831 158 108 31 chr9 114430886 114431246 -9644926 + RLTR19 LTR ERVK 99 486 -13 8 1458 244 122 21 153 chr9 114431238 114431310 -9644862 - B1_Mur4 SINE Alu -85 64 3 8 1458 318 304 77 56 chr9 114431339 114431482 -9644690 - B3A SINE B2 -52 164 19 8 1458 422 286 0 19 chr9 114432420 114432513 -9643659 + B1_Mur3 SINE Alu 45 137 -12 8 1458 925 83 239 43 chr9 114432513 114432676 -9643496 + B2_Mm2 SINE B2 1 195 0 8 1458 422 286 0 19 chr9 114432676 114432689 -9643483 + B1_Mur3 SINE Alu 138 149 0 8 1458 261 200 0 0 chr9 114432982 114433032 -9643140 - ID_B1 SINE B4 -1 223 174 8 1458 232 191 56 70 chr9 114433032 114433072 -9643100 - PB1D9 SINE Alu 0 115 30 8 1458 644 238 64 32 chr9 114433086 114433273 -9642899 + B3A SINE B2 3 195 -3 8 1458 474 66 0 0 chr9 114433394 114433455 -9642717 - B1_Mur4 SINE Alu -87 63 3 8 1458 226 261 0 127 chr9 114433455 114433473 -9642699 - MT2B LTR ERVL -382 219 151 8 1458 1209 50 0 0 chr9 114434589 114434730 -9641442 + B1_Mus2 SINE Alu 1 141 -6 8 1458 207 0 0 0 chr9 114434731 114434754 -9641418 + (G)n Simple_repeat Simple_repeat 1 23 0 8 1458 180 0 0 0 chr9 114435801 114435821 -9640351 + (CCCCCT)n Simple_repeat Simple_repeat 5 24 0 8 1458 219 305 63 0 chr9 114436880 114436975 -9639197 + RSINE1 SINE B4 11 111 -54 8 1458 553 0 0 0 chr9 114437028 114437097 -9639075 + L1Md_A LINE L1 6514 6582 0 8 1458 396 0 0 0 chr9 114437603 114437647 -9638525 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1458 1225 95 11 11 chr9 114438066 114438247 -9637925 + B2_Mm2 SINE B2 15 195 0 8 1458 231 150 25 0 chr9 114438296 114438336 -9637836 + RSINE1 SINE B4 15 55 -110 8 1458 407 171 51 26 chr9 114438568 114438646 -9637526 + B1F2 SINE Alu 26 105 -44 8 1458 315 0 0 0 chr9 114438663 114438698 -9637474 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 8 1458 292 286 0 109 chr9 114438704 114438717 -9637455 - MT2B LTR ERVL -351 250 210 8 1458 438 195 49 0 chr9 114438717 114438799 -9637373 - B1_Mus1 SINE Alu -59 89 4 8 1458 292 286 0 109 chr9 114438799 114438814 -9637358 - MT2B LTR ERVL -351 209 153 8 1458 225 0 0 0 chr9 114438821 114438846 -9637326 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1458 380 280 42 21 chr9 114439012 114439107 -9637065 - PB1D7 SINE Alu -2 118 22 8 1458 394 184 327 10 chr9 114439306 114439410 -9636762 - B1_Mur1 SINE Alu -11 138 2 8 1458 263 284 48 121 chr9 114439465 114439589 -9636583 + RSINE1 SINE B4 34 148 -17 8 1458 481 265 112 37 chr9 114439631 114439792 -9636380 + ID_B1 SINE B4 51 223 -1 8 1458 472 198 139 19 chr9 114439806 114439914 -9636258 + B1_Mur1 SINE Alu 29 149 0 8 1458 717 164 0 0 chr9 114440114 114440236 -9635936 + B3 SINE B2 85 206 -10 8 1458 270 0 0 0 chr9 114441051 114441081 -9635091 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1458 234 0 0 0 chr9 114441207 114441233 -9634939 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1458 1212 61 0 13 chr9 114441794 114441944 -9634228 + B1_Mus1 SINE Alu 1 148 0 8 1458 664 275 49 18 chr9 114441960 114442123 -9634049 + ID_B1 SINE B4 29 196 -28 8 1458 504 273 272 24 chr9 114442232 114442401 -9633771 + ID_B1 SINE B4 1 211 -13 8 1458 1494 72 0 5 chr9 114442599 114442794 -9633378 - B2_Mm2 SINE B2 0 195 2 8 1458 348 234 131 0 chr9 114443251 114443358 -9632814 - PB1 SINE Alu -2 125 5 8 1458 738 0 0 0 chr9 114443383 114443465 -9632707 + (TG)n Simple_repeat Simple_repeat 2 83 0 8 1458 237 186 32 48 chr9 114444472 114444534 -9631638 - BC1_Mm scRNA scRNA -85 67 7 8 1458 258 245 0 0 chr9 114444677 114444726 -9631446 - PB1 SINE Alu -66 61 13 8 1458 644 188 125 0 chr9 114444771 114444899 -9631273 + B1_Mm SINE Alu 1 144 -3 8 1458 536 289 73 24 chr9 114444960 114445166 -9631006 + B3 SINE B2 1 216 0 8 1458 1565 47 0 16 chr9 114445309 114445503 -9630669 + B2_Mm1a SINE B2 2 192 -1 8 1458 342 0 0 0 chr9 114445648 114445686 -9630486 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1458 232 284 125 10 chr9 114445767 114445863 -9630309 - MIR SINE MIR -87 175 69 8 1458 250 381 45 56 chr9 114446809 114446828 -9629344 + B4A SINE B4 71 131 -161 8 1458 596 244 0 63 chr9 114446828 114446955 -9629217 + B1_Mur1 SINE Alu 1 119 -30 8 1458 250 381 45 56 chr9 114446955 114446987 -9629185 + B4A SINE B4 132 246 -46 8 1458 581 197 220 20 chr9 114447040 114447190 -9628982 - B3 SINE B2 -25 191 12 8 1458 499 222 107 38 chr9 114447679 114447810 -9628362 - B1_Mus1 SINE Alu -6 142 3 8 1458 546 220 108 29 chr9 114448275 114448433 -9627739 + B3 SINE B2 1 171 -24 8 1458 587 172 0 83 chr9 114448452 114448585 -9627587 + B1_Mus2 SINE Alu 9 130 -17 8 1458 305 62 21 0 chr9 114448586 114448634 -9627538 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1458 1324 27 0 0 chr9 114448791 114448938 -9627234 + B1_Mus1 SINE Alu 2 148 0 9 1458 269 264 198 40 chr9 114449038 114449164 -9627008 + ID_B1 SINE B4 71 216 -8 9 1458 458 227 123 35 chr9 114449059 114449173 -9626999 + B1_Mur4 SINE Alu 26 149 -1 9 1458 1210 54 7 0 chr9 114449175 114449323 -9626849 + B1_Mur3 SINE Alu 1 149 0 9 1458 918 181 69 32 chr9 114449546 114449763 -9626409 - URR1B DNA MER1_type 0 225 1 9 1458 370 213 40 13 chr9 114450184 114450260 -9625912 + B1_Mur2 SINE Alu 50 127 -22 9 1458 228 67 0 0 chr9 114450265 114450295 -9625877 + (GGA)n Simple_repeat Simple_repeat 2 31 0 9 1458 751 264 126 34 chr9 114451251 114451514 -9624658 - B4A SINE B4 0 292 6 9 1458 435 155 35 23 chr9 114451558 114451644 -9624528 - B1_Mur4 SINE Alu 0 150 64 9 1458 764 136 34 54 chr9 114451701 114451849 -9624323 + B1_Mur4 SINE Alu 6 150 0 9 1458 1118 51 29 0 chr9 114451897 114452034 -9624138 + B1_Mus1 SINE Alu 2 142 -6 9 1458 469 67 0 0 chr9 114452648 114452708 -9623464 + B2_Mm2 SINE B2 1 60 -135 9 1458 1301 74 0 64 chr9 114452754 114452942 -9623230 + B2_Mm2 SINE B2 1 176 -19 9 1458 628 181 109 29 chr9 114454207 114454344 -9621828 - B1_Mur2 SINE Alu -1 148 1 9 1458 438 69 0 0 chr9 114454403 114454461 -9621711 + (TC)n Simple_repeat Simple_repeat 2 59 0 9 1458 315 0 0 0 chr9 114454461 114454496 -9621676 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1458 245 228 125 42 chr9 114454496 114454592 -9621580 - PB1D9 SINE Alu -8 112 9 9 1458 257 272 69 89 chr9 114454590 114454691 -9621481 - B1F SINE Alu -15 105 7 9 1458 1126 174 267 54 chr9 114454691 114455006 -9621166 + RLTR14 LTR ERV1 1 382 0 9 1458 622 211 189 50 chr9 114455064 114455244 -9620928 + B3 SINE B2 1 205 -11 9 1458 837 182 29 0 chr9 114455266 114455403 -9620769 + B1_Mur4 SINE Alu 2 142 -8 9 1458 647 170 62 0 chr9 114455747 114455859 -9620313 + B1_Mur4 SINE Alu 29 147 -3 9 1458 23 0 0 0 chr9 114455862 114455885 -9620287 + AT_rich Low_complexity Low_complexity 1 23 0 9 1458 287 227 0 96 chr9 114456261 114456344 -9619828 + MER53 DNA hAT 93 167 -26 9 1458 233 288 121 0 chr9 114457247 114457313 -9618859 + B1F SINE Alu 40 113 -36 9 1458 183 42 0 0 chr9 114458006 114458030 -9618142 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 9 1458 648 148 41 50 chr9 114458672 114458793 -9617379 + B1_Mus1 SINE Alu 20 139 -9 9 1458 297 0 0 0 chr9 114458793 114458826 -9617346 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1458 570 225 0 84 chr9 114458873 114459004 -9617168 + RSINE1 SINE B4 11 130 -35 9 1458 354 252 119 20 chr9 114459559 114459628 -9616544 + B3 SINE B2 100 179 -37 9 1458 216 0 0 0 chr9 114459628 114459652 -9616520 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1458 354 252 119 20 chr9 114459652 114459683 -9616489 + B3 SINE B2 180 210 -6 9 1458 223 273 0 0 chr9 114460369 114460413 -9615759 + PB1D10 SINE Alu 61 104 -13 9 1458 599 208 152 7 chr9 114460530 114460675 -9615497 + B3 SINE B2 48 213 -3 9 1458 500 242 95 16 chr9 114460844 114460970 -9615202 + B1F SINE Alu 7 142 -7 9 1458 524 69 28 0 chr9 114460971 114461043 -9615129 + B1_Mus2 SINE Alu 72 145 -2 9 1458 456 113 14 0 chr9 114461114 114461185 -9614987 + MTD LTR MaLR 340 411 -8 9 1458 713 106 83 68 chr9 114461198 114461330 -9614842 + B1_Mur4 SINE Alu 16 149 -1 9 1458 186 43 0 0 chr9 114461330 114461353 -9614819 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 9 1458 539 239 163 61 chr9 114461476 114461672 -9614500 + B3 SINE B2 1 216 0 9 1458 493 188 246 8 chr9 114461814 114461932 -9614240 - B1_Mur2 SINE Alu -1 148 3 9 1458 253 167 152 0 chr9 114462349 114462415 -9613757 + B1_Mur4 SINE Alu 73 148 -2 9 1458 1318 103 38 0 chr9 114462444 114462628 -9613544 + B2_Mm2 SINE B2 4 194 -1 9 1458 440 275 0 24 chr9 114462779 114462902 -9613270 - RSINE1 SINE B4 -45 120 1 9 1458 476 227 103 0 chr9 114462903 114463000 -9613172 - B1F SINE Alu -40 109 3 9 1458 574 156 73 9 chr9 114463617 114463727 -9612445 + B1F2 SINE Alu 23 139 -10 9 1458 298 262 105 137 chr9 114463618 114463808 -9612364 + B4 SINE B4 109 292 0 9 1458 657 219 0 21 chr9 114464468 114464608 -9611564 - B1_Mus1 SINE Alu -7 141 5 9 1458 362 244 44 131 chr9 114464507 114464644 -9611528 - MT2B LTR ERVL -344 257 133 9 1458 616 247 82 22 chr9 114464776 114464958 -9611214 + B3 SINE B2 21 213 -3 9 1458 198 103 0 0 chr9 114464960 114464989 -9611183 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1458 289 167 9 51 chr9 114465029 114465097 -9611075 + B1F1 SINE Alu 52 149 0 9 1458 249 33 0 0 chr9 114465101 114465131 -9611041 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 9 1458 288 0 0 0 chr9 114465347 114465379 -9610793 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1458 225 246 16 16 chr9 114465692 114465754 -9610418 + B4A SINE B4 190 251 -41 9 1458 188 34 0 33 chr9 114465916 114465946 -9610226 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1458 547 133 30 20 chr9 114465946 114466046 -9610126 - B1_Mm SINE Alu -9 138 38 9 1458 279 194 71 43 chr9 114466301 114466371 -9609801 + PB1D7 SINE Alu 29 100 -20 9 1458 216 0 0 0 chr9 114467174 114467198 -9608974 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1458 332 232 48 78 chr9 114467303 114467406 -9608766 + PB1D10 SINE Alu 17 116 -1 9 1458 24 0 0 0 chr9 114468329 114468353 -9607819 + AT_rich Low_complexity Low_complexity 1 24 0 9 1458 359 251 39 3 chr9 114468354 114468450 -9607722 - PB1D7 SINE Alu -6 114 5 9 1458 477 0 0 0 chr9 114468805 114468858 -9607314 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1458 482 206 115 31 chr9 114469532 114469662 -9606510 + B1F SINE Alu 1 141 -8 9 1458 473 233 49 16 chr9 114471003 114471125 -9605047 + RSINE1 SINE B4 11 136 -29 9 1458 29 78 0 0 chr9 114471707 114471771 -9604401 + GC_rich Low_complexity Low_complexity 1 64 0 9 1458 38 0 0 0 chr9 114471799 114471837 -9604335 + GC_rich Low_complexity Low_complexity 1 38 0 9 1458 37 0 0 0 chr9 114472074 114472111 -9604061 + GC_rich Low_complexity Low_complexity 1 37 0 9 1458 30 0 0 0 chr9 114472554 114472584 -9603588 + GC_rich Low_complexity Low_complexity 1 30 0 9 1458 21 0 0 0 chr9 114472672 114472693 -9603479 + GC_rich Low_complexity Low_complexity 1 21 0 9 1458 26 30 0 0 chr9 114472780 114472813 -9603359 + GC_rich Low_complexity Low_complexity 1 33 0 9 1458 22 56 0 0 chr9 114472877 114472913 -9603259 + GC_rich Low_complexity Low_complexity 1 36 0 9 1458 240 111 0 0 chr9 114473720 114473756 -9602416 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 9 1458 612 27 0 0 chr9 114474501 114474575 -9601597 + (TG)n Simple_repeat Simple_repeat 1 74 0 9 1458 348 247 129 0 chr9 114475121 114475206 -9600966 + RSINE1 SINE B4 25 120 -45 9 1458 1236 83 0 4 chr9 114475223 114475478 -9600694 + (CA)n Simple_repeat Simple_repeat 1 254 0 9 1458 648 295 10 45 chr9 114475498 114475654 -9600518 - B3A SINE B2 -6 192 44 9 1458 2338 81 15 15 chr9 114475654 114475981 -9600191 + ORR1A2 LTR MaLR 1 327 0 9 1458 648 295 10 45 chr9 114475981 114476023 -9600149 - B3A SINE B2 -155 43 2 9 1458 399 226 12 16 chr9 114476058 114476153 -9600019 + B1F SINE Alu 1 92 -55 9 1458 469 266 9 0 chr9 114476183 114476292 -9599880 + PB1D10 SINE Alu 1 110 -7 9 1458 327 104 0 0 chr9 114476292 114476340 -9599832 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 9 1458 557 234 64 8 chr9 114476350 114476475 -9599697 + B1_Mus1 SINE Alu 2 133 -15 9 1458 680 223 78 26 chr9 114476672 114476865 -9599307 + B3 SINE B2 1 203 -13 9 1458 609 231 31 0 chr9 114476905 114477035 -9599137 + B1_Mur2 SINE Alu 16 149 0 9 1458 856 151 271 0 chr9 114477051 114477217 -9598955 + B3 SINE B2 2 212 -4 9 1458 1118 83 7 0 chr9 114477246 114477390 -9598782 + B1_Mus1 SINE Alu 4 148 0 9 1458 413 202 128 0 chr9 114477581 114477675 -9598497 + B1_Mur3 SINE Alu 44 149 0 9 1458 204 125 0 0 chr9 114477676 114477708 -9598464 + (GAA)n Simple_repeat Simple_repeat 2 33 0 9 1458 1113 67 0 7 chr9 114477727 114477863 -9598309 + B1_Mus2 SINE Alu 1 135 -12 9 1458 956 125 0 0 chr9 114478056 114478192 -9597980 + B1_Mus2 SINE Alu 12 147 0 9 1458 309 302 74 44 chr9 114478202 114478337 -9597835 + HAL1-3A_ME LINE L1 2299 2437 -421 9 1458 339 261 35 21 chr9 114478345 114478486 -9597686 + G-rich Low_complexity Low_complexity 1 143 0 9 1458 531 204 38 1 chr9 114478574 114478686 -9597486 + B3 SINE B2 1 120 -73 9 1458 891 0 0 0 chr9 114478711 114478810 -9597362 + (GA)n Simple_repeat Simple_repeat 1 99 0 9 1458 888 108 0 0 chr9 114478810 114478930 -9597242 + B2_Mm2 SINE B2 4 123 -72 9 1458 1194 44 0 0 chr9 114478960 114479097 -9597075 - B1_Mus2 SINE Alu -9 138 2 9 1458 391 111 0 31 chr9 114479097 114479148 -9597024 + B2_Mm2 SINE B2 109 158 -37 9 1458 528 59 0 0 chr9 114479148 114479216 -9596956 + (TAAA)n Simple_repeat Simple_repeat 3 70 0 9 1458 391 111 0 31 chr9 114479216 114479229 -9596943 + B2_Mm2 SINE B2 159 171 -24 9 1458 607 212 0 0 chr9 114479398 114479516 -9596656 + ID_B1 SINE B4 104 221 -3 9 1458 190 300 164 16 chr9 114479546 114479668 -9596504 + MIR SINE MIR 109 248 -14 9 1458 897 252 35 0 chr9 114479690 114479888 -9596284 - B3 SINE B2 -10 206 2 1 1458 845 152 7 0 chr9 114479914 114480052 -9596120 - B1_Mus2 SINE Alu 0 147 9 1 1458 293 242 182 0 chr9 114480103 114480169 -9596003 + RSINE1 SINE B4 6 83 -82 1 1458 1250 55 0 0 chr9 114480374 114480520 -9595652 + B1_Mm SINE Alu 1 146 -1 1 1458 180 0 0 0 chr9 114480522 114480542 -9595630 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1458 229 247 11 147 chr9 114480806 114480901 -9595271 + MLT1H1 LTR MaLR 411 492 -63 1 1458 1473 74 11 5 chr9 114480912 114481103 -9595069 + B2_Mm2 SINE B2 3 194 -1 1 1458 245 293 0 0 chr9 114481111 114481169 -9595003 + RSINE1 SINE B4 3 60 -105 1 1458 397 110 364 9 chr9 114481183 114481293 -9594879 - B2_Mm2 SINE B2 0 195 47 1 1458 1194 111 23 0 chr9 114481340 114481511 -9594661 - B2_Mm2 SINE B2 -14 181 7 1 1458 1339 80 37 0 chr9 114481512 114481699 -9594473 - B2_Mm2 SINE B2 0 195 2 1 1458 267 296 27 53 chr9 114481700 114481775 -9594397 + RSINE1 SINE B4 93 165 0 1 1458 820 117 14 0 chr9 114481775 114481920 -9594252 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 1 1458 673 250 86 12 chr9 114481941 114482103 -9594069 - B3 SINE B2 -41 175 2 1 1458 516 304 12 36 chr9 114482137 114482304 -9593868 - RSINE1 SINE B4 0 165 3 1 1458 384 257 61 9 chr9 114482305 114482419 -9593753 - PB1D7 SINE Alu 0 120 1 1 1458 246 224 63 105 chr9 114482714 114482809 -9593363 - PB1D10 SINE Alu -1 116 26 1 1458 337 211 38 63 chr9 114482735 114482854 -9593318 - ID_B1 SINE B4 -40 184 23 1 1458 447 158 49 0 chr9 114482901 114482983 -9593189 - B1_Mus1 SINE Alu -57 91 6 1 1458 232 250 0 18 chr9 114482985 114483008 -9593164 + polypyrimidine Low_complexity Low_complexity 37 58 0 1 1458 1480 0 0 32 chr9 114483008 114483194 -9592978 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 1 1458 232 250 0 18 chr9 114483194 114483227 -9592945 + polypyrimidine Low_complexity Low_complexity 4 36 0 1 1458 1066 69 7 40 chr9 114483245 114483396 -9592776 + B1_Mus2 SINE Alu 2 147 0 1 1458 331 309 100 0 chr9 114483416 114483526 -9592646 - B1F1 SINE Alu -17 132 12 1 1458 448 179 24 0 chr9 114483511 114483595 -9592577 - B3 SINE B2 -130 86 1 1 1458 197 65 32 0 chr9 114483599 114483630 -9592542 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1 1458 1345 52 40 0 chr9 114483630 114483804 -9592368 - B2_Mm2 SINE B2 0 195 15 1 1458 1306 90 32 5 chr9 114483811 114484001 -9592171 - B2_Mm2 SINE B2 0 195 1 1 1458 301 238 198 19 chr9 114484006 114484114 -9592058 - PB1D10 SINE Alu -1 148 23 1 1458 410 241 18 18 chr9 114484153 114484263 -9591909 - L1MA9 LINE L1 -393 5919 5810 1 1458 364 272 54 104 chr9 114484294 114484325 -9591847 + B4 SINE B4 79 181 -111 1 1458 854 106 0 16 chr9 114484325 114484450 -9591722 + B1_Mus2 SINE Alu 25 147 0 1 1458 364 272 54 104 chr9 114484450 114484467 -9591705 + B4 SINE B4 182 246 -46 1 1458 1252 142 0 58 chr9 114484570 114484795 -9591377 + B3 SINE B2 2 213 -3 1 1458 1040 73 73 0 chr9 114484798 114484934 -9591238 + B1_Mus2 SINE Alu 2 147 0 1 1458 368 210 103 88 chr9 114485346 114485482 -9590690 + B1F1 SINE Alu 2 139 -10 1 1458 285 364 9 26 chr9 114485483 114485596 -9590576 + RSINE1 SINE B4 55 165 0 1 1458 327 222 24 47 chr9 114485641 114485726 -9590446 + B1_Mus1 SINE Alu 1 83 -65 1 1458 652 155 86 0 chr9 114485752 114485869 -9590303 - B1_Mur2 SINE Alu -21 128 2 1 1458 920 250 0 41 chr9 114485901 114486122 -9590050 + B3 SINE B2 1 212 -4 1 1458 1359 81 27 5 chr9 114486147 114486333 -9589839 + B2_Mm2 SINE B2 2 191 -4 1 1458 1258 95 20 50 chr9 114486338 114486537 -9589635 - B2_Mm2 SINE B2 -2 193 1 1 1458 25 0 0 0 chr9 114486539 114486564 -9589608 + AT_rich Low_complexity Low_complexity 1 25 0 1 1458 856 161 0 45 chr9 114486580 114486736 -9589436 - B1_Mur4 SINE Alu 0 150 2 1 1458 583 198 64 32 chr9 114486780 114486905 -9589267 + B1_Mur1 SINE Alu 20 148 -1 1 1458 1179 49 7 7 chr9 114486918 114487063 -9589109 + B1_Mus2 SINE Alu 3 147 0 1 1458 180 176 0 0 chr9 114487130 114487164 -9589008 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 1 1458 1473 23 0 0 chr9 114487180 114487353 -9588819 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 1458 1066 120 42 32 chr9 114487408 114487597 -9588575 + B2_Mm1t SINE B2 2 192 -1 1 1458 210 341 54 23 chr9 114487615 114487744 -9588428 + B4A SINE B4 4 136 -156 1 1458 306 312 52 0 chr9 114487706 114487802 -9588370 + PB1D10 SINE Alu 16 116 -1 1 1458 502 262 47 11 chr9 114487897 114488112 -9588060 - L1MC4 LINE L1 -182 7860 7606 1 1458 1083 151 0 16 chr9 114488798 114488980 -9587192 + B2_Mm2 SINE B2 3 181 -14 1 1458 992 135 12 0 chr9 114489054 114489224 -9586948 + (CACG)n Simple_repeat Simple_repeat 1 172 0 1 1458 754 129 117 36 chr9 114489234 114489371 -9586801 + B1_Mus1 SINE Alu 1 148 0 1 1458 207 0 0 0 chr9 114489527 114489550 -9586622 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1458 1549 43 27 0 chr9 114489717 114489905 -9586267 + B2_Mm1a SINE B2 1 193 0 1 1458 914 186 78 34 chr9 114489924 114490130 -9586042 + B3 SINE B2 1 215 -1 1 1458 1067 67 0 0 chr9 114490312 114490447 -9585725 - B1_Mus2 SINE Alu -1 146 12 1 1458 215 232 106 35 chr9 114490613 114490698 -9585474 - MIRb SINE MIR -116 152 62 1 1458 842 156 20 20 chr9 114490913 114491063 -9585109 + B1_Mur4 SINE Alu 1 150 0 1 1458 191 61 0 29 chr9 114491063 114491097 -9585075 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 1458 719 225 0 8 chr9 114491209 114491339 -9584833 + B3 SINE B2 1 129 -87 1 1458 450 179 241 0 chr9 114491438 114491550 -9584622 + B3 SINE B2 65 203 -13 1 1458 621 171 0 18 chr9 114491884 114491997 -9584175 - PB1D9 SINE Alu 0 120 10 1 1458 300 341 0 0 chr9 114491922 114492010 -9584162 - B4 SINE B4 -123 169 82 1 1458 1115 164 41 59 chr9 114492029 114492249 -9583923 - B3 SINE B2 0 216 1 1 1458 1242 48 7 0 chr9 114492512 114492658 -9583514 + B1_Mus1 SINE Alu 2 148 0 1 1458 212 143 0 0 chr9 114493460 114493495 -9582677 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 1 1458 428 204 46 22 chr9 114494246 114494369 -9581803 - B3 SINE B2 -67 149 22 1 1458 438 184 13 0 chr9 114494405 114494481 -9581691 - B1_Mur1 SINE Alu -9 140 64 1 1458 216 97 0 0 chr9 114494483 114494514 -9581658 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1458 1056 50 50 0 chr9 114494514 114494653 -9581519 - B1_Mm SINE Alu 0 147 2 1 1458 545 184 91 9 chr9 114494699 114494809 -9581363 - B1_Mus2 SINE Alu 0 147 29 1 1458 532 143 90 20 chr9 114494805 114494905 -9581267 + B1_Mur2 SINE Alu 40 146 -3 1 1458 190 89 21 43 chr9 114495185 114495232 -9580940 + A-rich Low_complexity Low_complexity 3 48 0 1 1458 1331 199 234 3 chr9 114495274 114495581 -9580591 + ORR1C1 LTR MaLR 1 378 0 1 1458 427 225 0 0 chr9 114495614 114495694 -9580478 - B1_Mus1 SINE Alu -68 80 1 1 1458 235 183 77 0 chr9 114495729 114495833 -9580339 + (TA)n Simple_repeat Simple_repeat 1 112 0 1 1458 760 248 163 30 chr9 114495838 114496071 -9580101 - MTD LTR MaLR -128 291 28 1 1458 384 360 14 28 chr9 114496398 114496541 -9579631 - RSINE1 SINE B4 -21 144 4 1 1458 516 241 97 81 chr9 114496590 114496848 -9579324 - RMER2 LTR ERV1 -16 551 290 1 1458 555 149 66 16 chr9 114497077 114497226 -9578946 + B1_Mur3 SINE Alu 1 143 -6 1 1458 396 218 11 33 chr9 114497224 114497314 -9578858 + B3 SINE B2 27 114 -102 1 1458 368 214 35 29 chr9 114497578 114497688 -9578484 + ORR1D1 LTR MaLR 166 311 -68 1 1458 1158 88 0 0 chr9 114497984 114498131 -9578041 - B1_Mus2 SINE Alu 0 147 1 1 1458 347 292 97 70 chr9 114498177 114498291 -9577881 - ID_B1 SINE B4 -86 138 22 1 1458 560 150 174 17 chr9 114498467 114498582 -9577590 - B1_Mur2 SINE Alu 0 149 17 1 1458 252 86 0 0 chr9 114498599 114498634 -9577538 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1458 588 289 40 20 chr9 114498639 114498651 -9577521 - B3 SINE B2 -11 205 194 1 1458 2625 173 135 74 chr9 114498651 114498707 -9577465 - RMER6C LTR ERVK 0 690 650 1 1458 1290 90 26 5 chr9 114498707 114498896 -9577276 + B2_Mm1a SINE B2 1 193 0 1 1458 2625 173 135 74 chr9 114498896 114499171 -9577001 - RMER6C LTR ERVK -41 649 312 1 1458 1317 24 142 0 chr9 114499171 114499340 -9576832 + B2_Mm2 SINE B2 2 194 -1 1 1458 2625 173 135 74 chr9 114499340 114499657 -9576515 - RMER6C LTR ERVK -379 311 1 1 1458 667 263 42 13 chr9 114499657 114499842 -9576330 - B3A SINE B2 -23 193 4 1 1458 481 126 35 0 chr9 114499913 114500000 -9576172 + ORR1C1 LTR MaLR 1 90 -288 1 1458 1293 173 114 0 chr9 114500002 114500256 -9575916 + ORR1C2 LTR MaLR 101 383 -1 1 1458 477 104 15 0 chr9 114501094 114501161 -9575011 + B3 SINE B2 3 70 -146 2 1458 291 301 40 185 chr9 114501161 114501204 -9574968 + B4 SINE B4 3 83 -209 3 1458 510 222 91 33 chr9 114501204 114501325 -9574847 + B1_Mur1 SINE Alu 2 129 -20 4 1458 285 51 0 0 chr9 114501344 114501383 -9574789 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 5 1458 1168 55 0 40 chr9 114501383 114501535 -9574637 + B1_Mus2 SINE Alu 2 147 0 6 1458 210 143 0 0 chr9 114501535 114501570 -9574602 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1458 266 236 36 0 chr9 114501771 114501826 -9574346 - RSINE1 SINE B4 -1 164 108 8 1458 1173 62 7 0 chr9 114501955 114502101 -9574071 + B1_Mus2 SINE Alu 1 147 0 9 1458 186 143 0 0 chr9 114502102 114502137 -9574035 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1458 1341 80 11 11 chr9 114502199 114502388 -9573784 - B2_Mm1t SINE B2 -3 190 2 1 1458 285 200 271 57 chr9 114503063 114503185 -9572987 - ID_B1 SINE B4 -2 222 75 1 1458 904 200 35 40 chr9 114503176 114503374 -9572798 - B3 SINE B2 -10 206 10 1 1458 557 171 68 59 chr9 114503369 114503487 -9572685 + B1_Mus1 SINE Alu 29 147 -1 1 1458 390 287 101 22 chr9 114503561 114503700 -9572472 - RSINE1 SINE B4 -15 150 1 1 1458 388 260 39 29 chr9 114503847 114503950 -9572222 - B1_Mur2 SINE Alu -6 143 40 1 1458 236 272 186 81 chr9 114503950 114504013 -9572159 - B4 SINE B4 -65 213 38 1 1458 439 194 146 46 chr9 114504195 114504325 -9571847 - B1_Mur3 SINE Alu -6 143 1 1 1458 234 239 0 0 chr9 114504477 114504523 -9571649 - PB1D7 SINE Alu -5 115 70 1 1458 186 43 0 0 chr9 114505826 114505849 -9570323 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1458 772 118 59 0 chr9 114505850 114505969 -9570203 - B1_Mur3 SINE Alu -10 139 14 2 1458 1916 163 115 3 chr9 114505967 114506324 -9569848 - MTC LTR MaLR -23 398 2 2 1458 573 246 32 0 chr9 114506324 114506450 -9569722 - B1_Mur1 SINE Alu -15 134 5 2 1458 378 261 16 98 chr9 114507298 114507421 -9568751 + PB1 SINE Alu 13 125 -2 2 1458 478 122 25 25 chr9 114507483 114507601 -9568571 + GA-rich Low_complexity Low_complexity 3 120 0 2 1458 315 317 203 0 chr9 114508086 114508209 -9567963 + RSINE1 SINE B4 5 152 -13 2 1458 675 146 18 0 chr9 114508282 114508414 -9567758 + B1_Mus1 SINE Alu 5 143 -7 2 1458 255 264 47 142 chr9 114508643 114508749 -9567423 + RSINE1 SINE B4 70 165 0 2 1458 216 286 36 0 chr9 114508819 114508875 -9567297 + B1_Mur2 SINE Alu 1 58 -91 2 1458 261 57 0 0 chr9 114509083 114509118 -9567054 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 3 1458 259 234 29 72 chr9 114509129 114509198 -9566974 - B1F SINE Alu -73 76 11 3 1458 6465 40 26 15 chr9 114509243 114510003 -9566169 - L1_Mus1 LINE L1 0 6567 5798 3 1458 1181 99 32 16 chr9 114510003 114510188 -9565984 - B2_Mm1t SINE B2 -4 189 2 3 1458 6465 40 26 15 chr9 114510188 114510222 -9565950 - L1_Mus1 LINE L1 -770 5797 5764 3 1458 392 243 90 36 chr9 114510224 114510335 -9565837 - ID_B1 SINE B4 -1 223 107 3 1458 233 158 0 66 chr9 114510700 114510761 -9565411 + Lx9 LINE L1 7585 7641 -3 3 1458 1205 68 0 0 chr9 114510831 114510978 -9565194 - B1_Mus1 SINE Alu 0 148 2 3 1458 289 286 64 32 chr9 114511015 114511109 -9565063 + B1F2 SINE Alu 7 103 -46 3 1458 258 132 88 50 chr9 114511142 114511222 -9564950 - Lx9 LINE L1 -26 7618 7536 3 1458 384 187 53 0 chr9 114511226 114511301 -9564871 - U6 snRNA snRNA -19 88 10 3 1458 211 234 0 0 chr9 114511318 114511365 -9564807 + T-rich Low_complexity Low_complexity 1 47 0 4 1458 683 69 0 0 chr9 114511371 114511458 -9564714 - B1_Mus1 SINE Alu -61 87 1 4 1458 404 254 0 98 chr9 114511458 114511496 -9564676 - MT2B LTR ERVL -445 156 131 4 1458 276 240 52 46 chr9 114511458 114511524 -9564648 - ORR1B1-int LTR MaLR -776 733 580 4 1458 535 307 43 0 chr9 114511521 114511661 -9564511 - RSINE1 SINE B4 -1 164 19 4 1458 487 218 243 17 chr9 114511836 114512009 -9564163 + B3 SINE B2 1 212 -4 4 1458 462 216 27 9 chr9 114512309 114512421 -9563751 + PB1D10 SINE Alu 2 115 -2 4 1458 964 128 0 20 chr9 114512423 114512565 -9563607 + B1_Mur3 SINE Alu 1 140 -9 4 1458 252 0 0 0 chr9 114512565 114512593 -9563579 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1458 1183 27 0 52 chr9 114512902 114513056 -9563116 + B1_Mm SINE Alu 2 147 0 4 1458 186 43 0 0 chr9 114513627 114513650 -9562522 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 5 1458 322 269 66 19 chr9 114514024 114514130 -9562042 - ID_B1 SINE B4 -113 111 1 5 1458 472 215 43 0 chr9 114514242 114514335 -9561837 - B1F2 SINE Alu -27 122 26 5 1458 328 203 62 9 chr9 114514484 114514570 -9561602 + PB1D7 SINE Alu 19 116 -1 5 1458 430 266 0 52 chr9 114515165 114515280 -9560892 - ID_B1 SINE B4 -11 213 105 5 1458 882 119 7 15 chr9 114515334 114515470 -9560702 - B1_Mur3 SINE Alu -14 135 1 5 1458 870 143 234 0 chr9 114515490 114515665 -9560507 - B3 SINE B2 0 216 1 5 1458 319 215 160 11 chr9 114515788 114515873 -9560299 - B3 SINE B2 -25 191 93 5 1458 326 293 24 0 chr9 114515873 114515943 -9560229 + RLTR24 LTR ERV1 1 72 -457 5 1458 1082 294 125 32 chr9 114515943 114516528 -9559644 - RMER19B LTR ERVK 0 902 112 5 1458 1220 240 79 83 chr9 114516441 114516873 -9559299 + RLTR24 LTR ERV1 100 529 0 5 1458 365 239 28 0 chr9 114516873 114516937 -9559235 - B3 SINE B2 -123 93 28 5 1458 492 261 34 25 chr9 114516941 114517059 -9559113 - B1_Mur1 SINE Alu 0 149 31 6 1458 519 317 30 30 chr9 114517097 114517263 -9558909 - B3A SINE B2 -5 193 28 6 1458 836 177 54 27 chr9 114517270 114517456 -9558716 - B2_Mm2 SINE B2 -3 192 2 6 1458 860 267 14 46 chr9 114517487 114517703 -9558469 - B3 SINE B2 -7 209 1 6 1458 545 263 60 54 chr9 114517780 114517965 -9558207 - B3 SINE B2 -17 199 14 6 1458 361 229 189 39 chr9 114517984 114518111 -9558061 - B1_Mm SINE Alu -1 146 1 6 1458 974 88 80 0 chr9 114518116 114518253 -9557919 - B1_Mus1 SINE Alu 0 148 1 6 1458 510 250 85 8 chr9 114518266 114518395 -9557777 - ID_B1 SINE B4 -83 141 3 6 1458 941 167 36 31 chr9 114518530 114518722 -9557450 + B2_Mm2 SINE B2 3 195 0 6 1458 233 69 0 0 chr9 114518722 114518751 -9557421 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1458 558 43 0 0 chr9 114518751 114518820 -9557352 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 7 1458 219 162 0 0 chr9 114519137 114519174 -9556998 - B2_Mm2 SINE B2 -158 37 1 7 1458 215 225 27 101 chr9 114519314 114519397 -9556775 + BC1_Mm scRNA scRNA 1 76 -7 7 1458 877 142 0 39 chr9 114520103 114520257 -9555915 - B1_Mus1 SINE Alu 0 148 1 7 1458 438 226 183 0 chr9 114520352 114520467 -9555705 + ID_B1 SINE B4 81 216 -8 7 1458 1211 54 0 0 chr9 114520501 114520648 -9555524 + B1_Mus2 SINE Alu 1 147 0 7 1458 255 157 0 0 chr9 114520654 114520705 -9555467 + A-rich Low_complexity Low_complexity 1 51 0 7 1458 347 271 11 23 chr9 114520760 114520847 -9555325 + PB1D7 SINE Alu 1 86 -34 7 1458 601 203 103 22 chr9 114520902 114521038 -9555134 - B1_Mm SINE Alu 0 147 1 7 1458 384 22 0 0 chr9 114521063 114521108 -9555064 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1458 236 292 155 10 chr9 114521310 114521407 -9554765 - PB1D10 SINE Alu -6 111 1 8 1458 261 0 0 0 chr9 114521531 114521560 -9554612 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 8 1458 936 200 107 5 chr9 114521605 114521811 -9554361 + MTD LTR MaLR 6 232 -187 8 1458 789 279 162 22 chr9 114521828 114522225 -9553947 + RLTR16 LTR ERVK 3 493 -12 8 1458 1634 155 65 4 chr9 114522448 114522726 -9553446 + ORR1C1 LTR MaLR 1 295 -83 8 1458 1161 62 7 0 chr9 114522985 114523130 -9553042 - B1_Mus2 SINE Alu 0 147 2 8 1458 280 178 22 0 chr9 114523161 114523206 -9552966 + B1_Mus2 SINE Alu 9 54 -93 8 1458 22 0 0 0 chr9 114523225 114523247 -9552925 + AT_rich Low_complexity Low_complexity 1 22 0 8 1458 716 270 84 0 chr9 114523488 114523666 -9552506 + B3 SINE B2 2 194 -22 8 1458 341 242 82 21 chr9 114523683 114523780 -9552392 - MER2 DNA MER2_type -231 114 12 8 1458 1116 96 101 11 chr9 114524318 114524497 -9551675 - B2_Mm2 SINE B2 0 195 1 9 1458 608 246 148 0 chr9 114524519 114524702 -9551470 - B3 SINE B2 -6 210 1 9 1458 508 248 9 0 chr9 114524727 114524832 -9551340 - PB1D10 SINE Alu 0 117 12 9 1458 977 126 119 6 chr9 114524994 114525170 -9551002 + ORR1B1 LTR MaLR 1 196 -198 9 1458 1737 21 0 0 chr9 114525182 114525375 -9550797 - B2_Mm1t SINE B2 0 193 1 9 1458 1186 98 60 5 chr9 114525419 114525604 -9550568 + B2_Mm2 SINE B2 1 195 0 9 1458 702 210 125 16 chr9 114525624 114525808 -9550364 + B3 SINE B2 7 210 -6 9 1458 231 329 29 0 chr9 114525834 114525904 -9550268 + ID4_ SINE ID 2 73 -10 9 1458 1273 108 27 0 chr9 114526645 114526831 -9549341 - B2_Mm1t SINE B2 -2 191 1 9 1458 1470 43 0 65 chr9 114527584 114527784 -9548388 - B2_Mm2 SINE B2 -6 189 3 9 1458 328 322 61 73 chr9 114527973 114527990 -9548182 - B4A SINE B4 0 292 278 1 1458 324 0 0 0 chr9 114527990 114528026 -9548146 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1458 328 322 61 73 chr9 114528026 114528172 -9548000 - B4A SINE B4 -15 277 131 1 1458 230 298 53 0 chr9 114528798 114528855 -9547317 + ID4 SINE ID 1 60 -23 1 1458 243 0 0 0 chr9 114528857 114528884 -9547288 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1458 679 247 77 27 chr9 114529030 114529213 -9546959 - ID_B1 SINE B4 -14 210 19 1 1458 394 268 94 0 chr9 114529236 114529363 -9546809 - B1F1 SINE Alu -10 139 1 1 1458 967 35 0 0 chr9 114529392 114529506 -9546666 - B2_Mm2 SINE B2 -55 140 27 1 1458 1048 39 0 0 chr9 114529517 114529644 -9546528 - B1_Mus2 SINE Alu 0 147 21 1 1458 346 134 134 0 chr9 114529624 114529691 -9546481 - B3 SINE B2 -139 77 2 1 1458 797 120 58 43 chr9 114529859 114529998 -9546174 - B1_Mur3 SINE Alu 0 149 9 1 1458 560 176 128 0 chr9 114530190 114530292 -9545880 - B3 SINE B2 -86 130 16 1 1458 399 314 51 0 chr9 114530428 114530546 -9545626 + ID_B1 SINE B4 85 208 -16 1 1458 359 207 67 22 chr9 114530559 114530648 -9545524 + PB1D9 SINE Alu 28 120 0 1 1458 488 241 90 0 chr9 114531259 114531404 -9544768 + ID_B1 SINE B4 3 160 -64 1 1458 249 294 105 12 chr9 114531338 114531424 -9544748 + PB1D10 SINE Alu 6 99 -18 1 1458 388 278 37 0 chr9 114531738 114531846 -9544326 - PB1D10 SINE Alu -5 112 1 1 1458 275 299 15 0 chr9 114532359 114532426 -9543746 - PB1 SINE Alu -59 68 1 1 1458 1331 228 29 5 chr9 114532495 114532815 -9543357 + ORR1D1 LTR MaLR 3 372 -2 1 1458 1364 185 183 10 chr9 114532858 114533169 -9543003 + ORR1C1 LTR MaLR 6 370 -8 1 1458 562 281 28 90 chr9 114533177 114533388 -9542784 - B3A SINE B2 0 198 1 1 1458 566 257 7 28 chr9 114533397 114533541 -9542631 - ID_B1 SINE B4 -4 220 80 1 1458 698 202 172 6 chr9 114533591 114533760 -9542412 - B3A SINE B2 0 198 2 1 1458 325 262 71 0 chr9 114533760 114533844 -9542328 - PB1D10 SINE Alu -2 115 26 1 1458 369 285 193 21 chr9 114533784 114533852 -9542320 - ID_B1 SINE B4 -58 166 77 1 1458 237 33 0 0 chr9 114533852 114533882 -9542290 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 1 1458 369 285 193 21 chr9 114533882 114533953 -9542219 - ID SINE ID -148 76 4 1 1458 482 157 287 0 chr9 114534408 114534523 -9541649 + B1_Mus1 SINE Alu 1 148 0 1 1458 384 233 164 47 chr9 114534678 114534849 -9541323 - B4A SINE B4 -1 291 101 1 1458 323 265 0 0 chr9 114535187 114535255 -9540917 - ID4 SINE ID 0 83 16 1 1458 554 39 13 0 chr9 114536134 114536211 -9539961 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1458 725 54 0 11 chr9 114536803 114536897 -9539275 - B1_Mus1 SINE Alu -39 109 17 1 1458 413 223 57 19 chr9 114536809 114536914 -9539258 - ID_B1 SINE B4 -41 183 75 1 1458 776 246 36 0 chr9 114537016 114537183 -9538989 - B3 SINE B2 -42 174 2 1 1458 532 222 54 23 chr9 114537313 114537442 -9538730 - ID_B1 SINE B4 -3 221 89 1 1458 281 267 40 0 chr9 114537584 114537659 -9538513 - B4 SINE B4 0 292 215 1 1458 657 195 196 25 chr9 114537655 114537818 -9538354 - B3 SINE B2 -25 191 1 1 1458 627 274 68 10 chr9 114537823 114538029 -9538143 - B4 SINE B4 -68 224 7 1 1458 461 269 28 0 chr9 114538343 114538451 -9537721 + B1F1 SINE Alu 1 111 -38 1 1458 623 136 55 41 chr9 114538538 114538684 -9537488 + B1_Mur3 SINE Alu 2 149 0 1 1458 855 194 143 16 chr9 114538922 114539111 -9537061 - B3 SINE B2 0 216 4 1 1458 225 208 0 20 chr9 114539160 114539209 -9536963 - RSINE1 SINE B4 -115 50 3 1 1458 243 217 33 0 chr9 114539257 114539317 -9536855 - B3 SINE B2 -5 211 150 1 1458 216 229 147 67 chr9 114539324 114539399 -9536773 - B2_Mm2 SINE B2 -113 82 2 1 1458 365 265 0 35 chr9 114539437 114539523 -9536649 - B1F1 SINE Alu -46 103 21 1 1458 1245 41 0 7 chr9 114539572 114539720 -9536452 + B1_Mus1 SINE Alu 2 148 0 1 1458 353 254 154 26 chr9 114539750 114539867 -9536305 - B1_Mus2 SINE Alu -13 134 3 1 1458 476 128 25 13 chr9 114539874 114539953 -9536219 - B1_Mur1 SINE Alu -1 148 69 1 1458 767 187 40 94 chr9 114540059 114540260 -9535912 + B2_Mm2 SINE B2 3 192 -3 1 1458 21 0 0 0 chr9 114540592 114540613 -9535559 + AT_rich Low_complexity Low_complexity 1 21 0 1 1458 314 274 44 52 chr9 114540622 114540757 -9535415 - B4 SINE B4 0 292 159 1 1458 352 278 89 83 chr9 114541925 114542082 -9534090 + RSINE1 SINE B4 2 159 -6 1 1458 367 239 182 9 chr9 114542157 114542267 -9533905 - ID_B1 SINE B4 -8 216 88 1 1458 312 27 0 0 chr9 114542270 114542307 -9533865 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1458 378 0 0 0 chr9 114542562 114542604 -9533568 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1458 615 278 116 6 chr9 114542796 114542977 -9533195 + ID_B1 SINE B4 18 218 -6 1 1458 256 348 0 22 chr9 114542987 114543064 -9533108 + PB1 SINE Alu 39 114 -13 1 1458 216 0 0 0 chr9 114543064 114543088 -9533084 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1458 256 348 0 22 chr9 114543088 114543101 -9533071 + PB1 SINE Alu 115 127 0 1 1458 222 203 50 17 chr9 114543182 114543242 -9532930 + B4 SINE B4 14 75 -217 1 1458 294 29 0 0 chr9 114543313 114543348 -9532824 + (CATA)n Simple_repeat Simple_repeat 4 38 0 1 1458 300 173 358 0 chr9 114543490 114543571 -9532601 + B3 SINE B2 104 213 -3 1 1458 353 341 122 0 chr9 114543605 114543728 -9532444 - ID_B1 SINE B4 -6 218 81 1 1458 198 0 0 0 chr9 114543871 114543893 -9532279 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1458 748 160 15 8 chr9 114543896 114544028 -9532144 - B1F SINE Alu -12 137 5 1 1458 28 0 0 0 chr9 114544294 114544322 -9531850 + AT_rich Low_complexity Low_complexity 1 28 0 1 1458 421 220 70 85 chr9 114544887 114544915 -9531257 - B1F SINE Alu 0 149 125 1 1458 1564 42 16 5 chr9 114544915 114545105 -9531067 + B2_Mm2 SINE B2 2 193 -2 1 1458 421 220 70 85 chr9 114545105 114545205 -9530967 - B1F SINE Alu -25 124 23 1 1458 560 41 0 14 chr9 114545285 114545359 -9530813 + B1_Mm SINE Alu 75 147 0 1 1458 189 0 0 0 chr9 114545359 114545380 -9530792 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1458 282 316 0 12 chr9 114545380 114545460 -9530712 + RSINE1 SINE B4 3 81 -84 1 1458 292 263 20 50 chr9 114545642 114545742 -9530430 + B4A SINE B4 129 225 -67 1 1458 317 43 0 21 chr9 114545825 114545873 -9530299 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1458 416 246 80 0 chr9 114546099 114546237 -9529935 - B1F1 SINE Alu 0 149 1 1 1458 323 251 35 10 chr9 114546367 114546471 -9529701 + B1F1 SINE Alu 1 111 -203 1 1458 468 171 133 0 chr9 114546827 114546932 -9529240 - RSINE1 SINE B4 -29 136 18 1 1458 671 126 7 93 chr9 114546985 114547125 -9529047 + B1_Mus2 SINE Alu 15 142 -5 1 1458 243 133 0 0 chr9 114547130 114547175 -9528997 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1458 238 279 118 0 chr9 114547561 114547629 -9528543 + RSINE1 SINE B4 3 78 -87 1 1458 560 244 167 0 chr9 114547650 114547806 -9528366 + B3A SINE B2 16 197 -1 1 1458 594 182 79 40 chr9 114547871 114547997 -9528175 + B1_Mur2 SINE Alu 5 135 -14 1 1458 276 30 0 0 chr9 114547997 114548030 -9528142 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 1 1458 1304 98 0 25 chr9 114548172 114548371 -9527801 + B2_Mm2 SINE B2 1 194 -1 1 1458 875 203 19 25 chr9 114548380 114548570 -9527602 + B3A SINE B2 1 190 -5 1 1458 280 216 92 26 chr9 114549882 114549958 -9526214 - B1F1 SINE Alu -1 148 68 1 1458 297 232 158 0 chr9 114550642 114550663 -9525509 - ID_B1 SINE B4 -47 177 84 1 1458 379 133 33 0 chr9 114550663 114550723 -9525449 - PB1D9 SINE Alu -56 64 3 1 1458 28 0 0 0 chr9 114550742 114550770 -9525402 + AT_rich Low_complexity Low_complexity 1 28 0 1 1458 439 301 19 0 chr9 114550778 114550881 -9525291 + RSINE1 SINE B4 6 110 -55 1 1458 22 0 0 0 chr9 114550969 114550991 -9525181 + AT_rich Low_complexity Low_complexity 1 22 0 1 1458 288 333 22 0 chr9 114551064 114551154 -9525018 + PB1D10 SINE Alu 16 107 -10 1 1458 38 22 0 0 chr9 114551155 114551200 -9524972 + AT_rich Low_complexity Low_complexity 1 45 0 1 1458 1437 78 10 0 chr9 114551200 114551392 -9524780 - B2_Mm2 SINE B2 -1 194 1 1 1458 1330 102 5 0 chr9 114551535 114551721 -9524451 + B2_Mm1t SINE B2 2 188 -5 1 1458 1165 51 0 0 chr9 114551727 114551864 -9524308 + B1_Mus2 SINE Alu 2 138 -9 1 1458 207 69 0 0 chr9 114551864 114551893 -9524279 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1458 644 112 19 0 chr9 114551922 114552029 -9524143 + (GGGAA)n Simple_repeat Simple_repeat 2 110 0 1 1458 556 281 27 54 chr9 114552045 114552192 -9523980 + RSINE1 SINE B4 23 165 0 1 1458 357 24 0 0 chr9 114552215 114552257 -9523915 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1458 345 306 18 18 chr9 114552286 114552396 -9523776 + PB1D9 SINE Alu 10 119 -1 1 1458 409 291 0 66 chr9 114552396 114552532 -9523640 + ID_B1 SINE B4 92 218 -6 1 1458 640 321 42 0 chr9 114552579 114552769 -9523403 + B3A SINE B2 1 198 0 1 1458 626 252 15 0 chr9 114552784 114552915 -9523257 - ID_B1 SINE B4 -89 135 3 1 1458 386 243 41 151 chr9 114553315 114553533 -9522639 - LTR86C LTR ERVL -9 612 419 1 1458 1490 73 5 0 chr9 114553807 114553999 -9522173 + B2_Mm1a SINE B2 1 193 0 1 1458 797 215 130 0 chr9 114554014 114554191 -9521981 + B3 SINE B2 3 202 -14 2 1458 384 217 0 0 chr9 114554202 114554294 -9521878 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1458 736 248 13 7 chr9 114554295 114554449 -9521723 - RSINE1 SINE B4 0 165 11 2 1458 221 365 24 0 chr9 114554373 114554458 -9521714 - B2_Mm1t SINE B2 -106 87 1 2 1458 1174 35 21 0 chr9 114554507 114554650 -9521522 + B1_Mus1 SINE Alu 1 146 -2 2 1458 225 231 132 88 chr9 114554657 114554771 -9521401 - RLTR25A LTR ERVK -464 639 521 2 1458 578 221 62 8 chr9 114554673 114554801 -9521371 - B1_Mur2 SINE Alu -8 141 7 2 1458 306 292 130 24 chr9 114554698 114554821 -9521351 - B4 SINE B4 -87 205 70 2 1458 257 139 0 0 chr9 114554874 114554910 -9521262 + MTD LTR MaLR 5 40 -381 2 1458 775 209 176 0 chr9 114554910 114555097 -9521075 + URR1A DNA MER1_type 1 220 -6 2 1458 1639 42 0 0 chr9 114555099 114555291 -9520881 + B2_Mm1a SINE B2 2 193 0 2 1458 1381 207 34 155 chr9 114555308 114555482 -9520690 + MTD LTR MaLR 28 209 -210 2 1458 1220 35 0 0 chr9 114555482 114555623 -9520549 + B1_Mus1 SINE Alu 1 141 -7 2 1458 1381 207 34 155 chr9 114555623 114555894 -9520278 + MTD LTR MaLR 210 419 0 2 1458 671 223 7 14 chr9 114555894 114556035 -9520137 - MTEa LTR MaLR -239 140 1 2 1458 249 264 132 0 chr9 114556140 114556246 -9519926 - LTR86C LTR ERVL -392 229 110 1 1458 1096 194 24 9 chr9 114556327 114556540 -9519632 + B3 SINE B2 1 216 0 2 1458 471 167 196 8 chr9 114556564 114556697 -9519475 - B2_Mm2 SINE B2 -11 184 27 2 1459 234 222 74 0 chr9 114557158 114557212 -9518960 - B3 SINE B2 -158 58 1 2 1459 223 49 49 0 chr9 114557491 114557532 -9518640 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2 1459 1671 36 0 0 chr9 114557537 114557729 -9518443 + B2_Mm1a SINE B2 2 193 0 2 1459 228 35 0 0 chr9 114557829 114557858 -9518314 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1459 1104 23 0 0 chr9 114557862 114557995 -9518177 - B1_Mus2 SINE Alu -5 142 10 2 1459 274 311 35 107 chr9 114558030 114558199 -9517973 + B4A SINE B4 63 219 -73 2 1459 579 223 76 15 chr9 114558075 114558207 -9517965 + B1_Mur2 SINE Alu 8 147 -2 2 1459 229 222 19 0 chr9 114558211 114558265 -9517907 + (CAAA)n Simple_repeat Simple_repeat 3 57 0 2 1459 890 157 0 7 chr9 114558267 114558402 -9517770 + B1_Mm SINE Alu 5 138 -9 2 1459 231 118 59 0 chr9 114558444 114558495 -9517677 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1459 707 228 67 149 chr9 114558896 114559096 -9517076 + MTD LTR MaLR 5 200 -219 2 1459 772 197 7 0 chr9 114559096 114559243 -9516929 + B1_Mur4 SINE Alu 3 150 0 2 1459 707 228 67 149 chr9 114559243 114559310 -9516862 + MTD LTR MaLR 201 250 -169 2 1459 2253 141 97 23 chr9 114559480 114559777 -9516395 - MTC LTR MaLR 0 421 96 2 1459 1275 27 0 0 chr9 114559777 114559924 -9516248 - B1_Mm SINE Alu 0 147 1 2 1459 2253 141 97 23 chr9 114559924 114560018 -9516154 - MTC LTR MaLR -326 95 1 2 1459 199 337 68 23 chr9 114560025 114560113 -9516059 + MIRb SINE MIR 109 200 -68 2 1459 568 330 62 56 chr9 114560358 114560663 -9515509 + Lx8 LINE L1 6820 7126 -347 2 1459 360 77 0 0 chr9 114560928 114560980 -9515192 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1459 234 233 66 16 chr9 114560994 114561055 -9515117 + B4 SINE B4 2 65 -227 2 1459 501 235 33 16 chr9 114561086 114561207 -9514965 - B3A SINE B2 -75 123 1 2 1459 638 160 94 16 chr9 114561207 114561315 -9514857 - B1_Mur3 SINE Alu -31 118 1 2 1459 283 314 9 19 chr9 114561233 114561340 -9514832 - B4A SINE B4 -125 167 62 2 1459 209 176 0 0 chr9 114561340 114561374 -9514798 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1459 189 0 0 0 chr9 114561414 114561435 -9514737 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1459 542 308 8 8 chr9 114561592 114561726 -9514446 + ID_B1 SINE B4 80 213 -11 2 1459 1995 198 39 5 chr9 114561742 114562149 -9514023 + MTC LTR MaLR 1 421 0 2 1459 344 304 106 43 chr9 114562186 114562303 -9513869 - B4 SINE B4 -95 197 72 2 1459 3228 20 0 3 chr9 114562303 114562661 -9513511 + IAPEY2_LTR LTR ERVK 1 357 0 2 1459 344 304 106 43 chr9 114562661 114562684 -9513488 - B4 SINE B4 -221 71 48 2 1459 464 72 0 14 chr9 114562685 114562755 -9513417 + (TCTCCC)n Simple_repeat Simple_repeat 4 72 0 2 1459 670 203 0 8 chr9 114562783 114562902 -9513270 - B1_Mur2 SINE Alu -29 120 3 2 1459 337 245 138 0 chr9 114562915 114563009 -9513163 - PB1D10 SINE Alu -7 110 4 2 1459 465 254 106 8 chr9 114563081 114563204 -9512968 + B3 SINE B2 80 214 -2 2 1459 416 309 8 31 chr9 114563249 114563376 -9512796 - B3A SINE B2 -47 151 28 2 1459 279 54 0 0 chr9 114563389 114563426 -9512746 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2 1459 405 203 8 198 chr9 114563434 114563534 -9512638 - B2_Mm2 SINE B2 -95 121 40 2 1459 1379 62 23 0 chr9 114563534 114563710 -9512462 - B2_Mm2 SINE B2 -14 181 2 2 1459 405 198 0 198 chr9 114563710 114563751 -9512421 - B2_Mm2 SINE B2 -156 39 1 2 1459 665 216 84 47 chr9 114564582 114564772 -9511400 + B3 SINE B2 17 213 -3 2 1459 722 134 9 9 chr9 114564784 114564897 -9511275 + PB1D9 SINE Alu 1 113 -7 2 1459 183 114 0 0 chr9 114564917 114564952 -9511220 + (CAGG)n Simple_repeat Simple_repeat 2 36 0 2 1459 1445 70 11 0 chr9 114565076 114565263 -9510909 + B2_Mm1a SINE B2 1 189 -4 2 1459 1471 225 63 30 chr9 114565428 114565794 -9510378 + MTEa LTR MaLR 1 378 -1 2 1459 299 308 153 70 chr9 114565794 114565949 -9510223 + MER20 DNA MER1_type 52 219 0 2 1459 325 310 86 70 chr9 114566129 114566316 -9509856 - LTR33A LTR ERVL -320 200 11 2 1459 308 309 0 12 chr9 114566365 114566447 -9509725 + B4 SINE B4 2 82 -210 2 1459 246 325 42 42 chr9 114566447 114566484 -9509688 + B3A SINE B2 2 120 -78 2 1459 1519 204 82 50 chr9 114566522 114566942 -9509230 + RMER16 LTR ERVK 1 533 0 2 1459 685 239 179 90 chr9 114566995 114567390 -9508782 - RMER12 LTR ERVK -283 1525 747 2 1459 839 86 9 0 chr9 114567396 114567512 -9508660 + B2_Mm2 SINE B2 1 117 -78 2 1459 316 217 0 0 chr9 114567507 114567567 -9508605 - RLTR22_Mur LTR ERVK -599 1249 1190 2 1459 532 285 68 96 chr9 114567582 114567900 -9508272 - RLTR22_Mur LTR ERVK -366 1038 530 2 1459 725 125 0 18 chr9 114567900 114568014 -9508158 + B1_Mus1 SINE Alu 1 112 -36 2 1459 438 153 0 14 chr9 114568044 114568117 -9508055 + B1_Mur2 SINE Alu 78 149 0 2 1459 853 279 127 45 chr9 114568134 114568442 -9507730 - ORR1D2 LTR MaLR -29 341 9 2 1459 2447 152 0 64 chr9 114568557 114568978 -9507194 + ORR1B1 LTR MaLR 1 394 0 2 1459 213 194 0 0 chr9 114569361 114569397 -9506775 + C-rich Low_complexity Low_complexity 2 37 0 2 1459 512 247 108 25 chr9 114569397 114569555 -9506617 - ID_B1 SINE B4 0 224 54 2 1459 987 222 150 55 chr9 114569981 114570175 -9505997 - MTD LTR MaLR 0 419 210 2 1459 392 0 21 0 chr9 114570175 114570223 -9505949 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1459 987 222 150 55 chr9 114570223 114570395 -9505777 - MTD LTR MaLR -210 209 19 2 1459 1063 269 98 125 chr9 114570567 114571192 -9504980 - RLTR18 LTR ERVK 0 616 9 2 1459 37 0 0 0 chr9 114571544 114571581 -9504591 + AT_rich Low_complexity Low_complexity 1 37 0 2 1459 192 40 0 0 chr9 114571875 114571900 -9504272 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1459 883 250 14 24 chr9 114571908 114572117 -9504055 - B3 SINE B2 -9 207 1 2 1459 355 278 20 10 chr9 114572117 114572215 -9503957 - B4A SINE B4 -193 99 1 2 1459 369 250 0 133 chr9 114572244 114572258 -9503914 - PB1D10 SINE Alu -3 114 11 2 1459 586 192 0 66 chr9 114572258 114572364 -9503808 - ID_B1 SINE B4 -34 190 92 2 1459 320 312 20 47 chr9 114572515 114572663 -9503509 + MLT1H LTR MaLR 58 201 -348 2 1459 249 321 102 62 chr9 114572780 114573036 -9503136 + MLT1H LTR MaLR 181 446 -103 2 1459 790 288 70 15 chr9 114573115 114573386 -9502786 - B4A SINE B4 -6 286 1 2 1459 335 331 64 119 chr9 114573734 114573936 -9502236 + MLT1J LTR MaLR 161 351 -161 2 1459 878 204 91 62 chr9 114573942 114574151 -9502021 + B3 SINE B2 2 216 0 2 1459 494 55 27 0 chr9 114574168 114574241 -9501931 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 2 1459 207 0 0 0 chr9 114574326 114574349 -9501823 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1459 1210 43 0 0 chr9 114574351 114574491 -9501681 - B1_Mm SINE Alu -6 141 2 2 1459 950 153 36 18 chr9 114574514 114574680 -9501492 - B2_Mm2 SINE B2 -26 169 1 2 1459 732 127 101 36 chr9 114574824 114574963 -9501209 + B1_Mur4 SINE Alu 1 148 -2 2 1459 4176 153 96 79 chr9 114574980 114575849 -9500323 + RMER19B LTR ERVK 1 885 -17 2 1459 1229 48 0 0 chr9 114575849 114575996 -9500176 + B1_Mus2 SINE Alu 1 147 0 2 1459 251 274 59 59 chr9 114576036 114576172 -9500000 + ORR1E LTR MaLR 102 237 -122 2 1459 1243 100 0 0 chr9 114576609 114576779 -9499393 + ORR1A2 LTR MaLR 1 170 -157 2 1459 460 224 46 9 chr9 114576798 114576906 -9499266 - B3A SINE B2 -86 112 1 2 1459 701 248 136 19 chr9 114576906 114577111 -9499061 - B4 SINE B4 -62 230 1 2 1459 941 219 104 0 chr9 114577632 114577833 -9498339 - ID_B1 SINE B4 -1 223 2 2 1459 213 39 0 0 chr9 114577878 114577904 -9498268 + (CATA)n Simple_repeat Simple_repeat 2 27 0 2 1459 362 245 193 23 chr9 114577942 114578118 -9498054 - B4A SINE B4 -14 278 73 2 1459 25 0 0 0 chr9 114578232 114578257 -9497915 + GC_rich Low_complexity Low_complexity 1 25 0 2 1459 234 254 32 0 chr9 114578668 114578731 -9497441 - B4A SINE B4 -214 78 14 2 1459 1873 64 0 13 chr9 114578759 114578997 -9497175 - L1_Mus1 LINE L1 0 6567 6333 2 1459 1468 199 165 3 chr9 114578999 114579341 -9496831 + MTD LTR MaLR 18 405 -14 2 1459 403 194 14 14 chr9 114579551 114579624 -9496548 - ID4 SINE ID 0 83 11 2 1459 291 322 0 108 chr9 114579591 114579758 -9496414 - ZP3AR Satellite Satellite -21 191 43 3 1459 645 241 37 22 chr9 114579869 114579996 -9496176 + ID_B1 SINE B4 82 213 -11 3 1459 291 28 0 0 chr9 114579996 114580032 -9496140 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1459 279 133 0 0 chr9 114580118 114580163 -9496009 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 3 1459 691 208 8 8 chr9 114580165 114580296 -9495876 - B1F2 SINE Alu -18 131 1 3 1459 1340 63 11 6 chr9 114580338 114580513 -9495659 - B2_Mm2 SINE B2 -18 177 2 3 1459 743 54 0 0 chr9 114580515 114580608 -9495564 - 4.5SRNA scRNA scRNA -1 93 1 3 1459 1331 82 38 0 chr9 114580641 114580824 -9495348 + B2_Mm2 SINE B2 2 191 -4 3 1459 1403 156 187 29 chr9 114581175 114581491 -9494681 + ORR1D1 LTR MaLR 9 374 0 3 1459 460 258 52 75 chr9 114581809 114581943 -9494229 + ID_B1 SINE B4 81 211 -13 3 1459 22 0 0 0 chr9 114581997 114582019 -9494153 + GC_rich Low_complexity Low_complexity 1 22 0 3 1459 832 221 222 20 chr9 114582434 114582753 -9493419 + MTD LTR MaLR 1 405 -14 3 1459 349 228 7 148 chr9 114582782 114582942 -9493230 + B4 SINE B4 7 143 -149 3 1459 1319 82 65 11 chr9 114583224 114583408 -9492764 + B2_Mm2 SINE B2 2 195 0 3 1459 1206 41 0 39 chr9 114583409 114583563 -9492609 + B1_Mus1 SINE Alu 1 148 0 3 1459 1210 212 108 37 chr9 114584267 114584590 -9491582 + MTE2b LTR MaLR 1 346 -33 3 1459 387 228 0 0 chr9 114584590 114584682 -9491490 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1459 294 164 0 127 chr9 114584763 114584826 -9491346 + B1_Mur1 SINE Alu 94 148 -1 3 1459 393 296 0 46 chr9 114584870 114585001 -9491171 + B1F SINE Alu 24 148 -1 3 1459 230 333 44 67 chr9 114585017 114585149 -9491023 + MER5A1 DNA MER1_type 2 130 -36 3 1459 806 233 70 26 chr9 114585149 114585370 -9490802 + MTD LTR MaLR 2 232 -187 3 1459 2371 201 44 33 chr9 114585370 114585455 -9490717 - RLTR20A LTR ERVK 0 541 450 3 1459 225 94 0 0 chr9 114585455 114585487 -9490685 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1459 2371 201 44 33 chr9 114585487 114585920 -9490252 - RLTR20A LTR ERVK -92 449 17 3 1459 1171 55 0 7 chr9 114585923 114586069 -9490103 + B1_Mus2 SINE Alu 3 147 0 3 1459 363 253 180 68 chr9 114586096 114586257 -9489915 + MTD LTR MaLR 241 419 0 3 1459 708 267 44 11 chr9 114586355 114586537 -9489635 + ID_B1 SINE B4 26 213 -11 3 1459 393 247 31 41 chr9 114586561 114586658 -9489514 - B4A SINE B4 -2 290 195 3 1459 596 295 18 31 chr9 114587047 114587271 -9488901 + ID_B1 SINE B4 4 224 0 3 1459 386 263 32 0 chr9 114587283 114587378 -9488794 + MTE2b LTR MaLR 1 98 -281 3 1459 500 149 35 0 chr9 114587513 114587600 -9488572 - B1_Mur2 SINE Alu -2 147 58 3 1459 1235 34 0 27 chr9 114587606 114587756 -9488416 + B1_Mm SINE Alu 2 147 0 3 1459 901 234 35 39 chr9 114587782 114588013 -9488159 + MTE2b LTR MaLR 150 379 0 3 1459 495 73 0 0 chr9 114588070 114588138 -9488034 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1459 224 59 29 0 chr9 114588185 114588219 -9487953 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 3 1459 301 296 0 12 chr9 114588224 114588306 -9487866 - PB1D10 SINE Alu -28 89 9 3 1459 296 319 0 21 chr9 114588306 114588317 -9487855 - ID_B1 SINE B4 -54 170 80 3 1459 724 283 11 24 chr9 114588374 114588561 -9487611 + B4A SINE B4 75 274 -18 3 1459 200 116 0 65 chr9 114588989 114589035 -9487137 + T-rich Low_complexity Low_complexity 6 48 0 3 1459 3778 163 60 79 chr9 114589642 114590403 -9485769 - RMER19B LTR ERVK -154 748 2 3 1459 783 241 53 48 chr9 114590557 114590766 -9485406 - ID_B1 SINE B4 -7 217 8 3 1459 502 274 0 75 chr9 114590877 114591011 -9485161 + ID_B1 SINE B4 94 217 -7 3 1459 410 260 40 121 chr9 114591011 114591026 -9485146 + B1F SINE Alu 13 149 0 3 1459 303 225 275 0 chr9 114591281 114591401 -9484771 + RSINE1 SINE B4 3 155 -10 3 1459 708 269 76 35 chr9 114591404 114591720 -9484452 - L2 LINE L2 -757 2662 2334 3 1459 1319 151 88 8 chr9 114591778 114592038 -9484134 - RMER16 LTR ERVK 0 533 253 3 1459 1175 58 0 0 chr9 114592045 114592184 -9483988 + B1_Mus1 SINE Alu 1 139 -9 3 1459 359 158 24 95 chr9 114592271 114592355 -9483817 - RMER16 LTR ERVK -455 78 1 3 1459 333 268 30 40 chr9 114592355 114592456 -9483716 - MER2B DNA MER2_type -31 305 206 3 1459 229 281 98 0 chr9 114592541 114592623 -9483549 - PB1D10 SINE Alu -5 112 23 3 1459 775 298 29 0 chr9 114592641 114592846 -9483326 + RCHARR1 DNA MER1_type 3 213 -761 3 1459 3218 38 2 24 chr9 114592852 114593159 -9483013 + MTB LTR MaLR 1 305 -95 3 1459 3399 52 38 2 chr9 114593159 114593580 -9482592 + RLTR10C LTR ERVK 1 436 0 3 1459 3218 38 2 24 chr9 114593580 114593681 -9482491 + MTB LTR MaLR 306 400 0 3 1459 982 245 139 4 chr9 114593681 114593955 -9482217 + RCHARR1 DNA MER1_type 220 530 -444 3 1459 1574 48 0 0 chr9 114593956 114594143 -9482029 + B2_Mm1t SINE B2 1 187 -6 3 1459 731 242 28 0 chr9 114594156 114594334 -9481838 + B3A SINE B2 4 186 -12 3 1459 25 0 0 0 chr9 114594384 114594409 -9481763 + AT_rich Low_complexity Low_complexity 1 25 0 3 1459 731 231 84 15 chr9 114594409 114594611 -9481561 + B3 SINE B2 1 216 0 3 1459 1210 68 0 0 chr9 114594615 114594761 -9481411 + B1_Mus2 SINE Alu 2 147 0 3 1459 1382 82 33 0 chr9 114594868 114595052 -9481120 + B2_Mm2 SINE B2 1 190 -5 3 1459 977 248 5 0 chr9 114595195 114595417 -9480755 - ID_B1 SINE B4 -1 223 1 3 1459 294 280 121 39 chr9 114595973 114596200 -9479972 + B4 SINE B4 44 292 0 3 1459 303 233 0 0 chr9 114596203 114596306 -9479866 + (CA)n Simple_repeat Simple_repeat 2 104 0 3 1459 237 184 0 0 chr9 114596314 114596352 -9479820 + B3A SINE B2 2 39 -159 3 1459 1219 77 0 0 chr9 114596353 114596509 -9479663 + B2_Mm2 SINE B2 2 157 -38 3 1459 207 0 0 0 chr9 114596509 114596532 -9479640 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1459 904 172 42 48 chr9 114596535 114596724 -9479448 + B3 SINE B2 27 214 -2 3 1459 238 369 0 0 chr9 114596752 114596836 -9479336 - MIR SINE MIR 0 262 179 3 1459 240 296 97 53 chr9 114597257 114597371 -9478801 + PB1D9 SINE Alu 1 119 -1 3 1459 210 118 0 0 chr9 114597920 114597954 -9478218 + (CCG)n Simple_repeat Simple_repeat 3 36 0 3 1459 21 0 0 0 chr9 114598099 114598120 -9478052 + GC_rich Low_complexity Low_complexity 1 21 0 3 1459 189 0 0 0 chr9 114598978 114598999 -9477173 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1459 219 69 0 0 chr9 114599327 114599356 -9476816 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1459 186 326 55 55 chr9 114599526 114599617 -9476555 + MIR SINE MIR 118 208 -54 3 1459 1364 66 0 37 chr9 114600565 114600754 -9475418 - B2_Mm2 SINE B2 -12 183 2 3 1459 315 246 68 14 chr9 114600984 114601058 -9475114 - B3A SINE B2 -39 159 82 3 1459 189 0 0 0 chr9 114601150 114601171 -9475001 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1459 1230 48 0 0 chr9 114601171 114601318 -9474854 - B1_Mus2 SINE Alu 0 147 1 3 1459 274 252 93 0 chr9 114601395 114601502 -9474670 - L1ME3 LINE L1 -5 6157 6041 3 1459 215 294 15 0 chr9 114601740 114601808 -9474364 + PB1D10 SINE Alu 28 96 -21 3 1459 869 203 102 0 chr9 114601812 114601999 -9474173 + B3 SINE B2 7 212 -4 3 1459 254 243 42 28 chr9 114602197 114602269 -9473903 - tRNA-Ala-GCG tRNA tRNA 0 75 3 3 1459 1552 48 21 0 chr9 114602464 114602651 -9473521 - B2_Mm2 SINE B2 -3 192 2 3 1459 640 297 19 84 chr9 114602713 114602865 -9473307 - MER58A DNA MER1_type -3 221 82 3 1459 1155 75 0 0 chr9 114602865 114603012 -9473160 - B1_Mus2 SINE Alu 0 147 1 3 1459 640 297 19 84 chr9 114603012 114603072 -9473100 - MER58A DNA MER1_type -143 81 23 3 1459 520 163 95 24 chr9 114603393 114603519 -9472653 + ID_B1 SINE B4 85 219 -5 3 1459 373 212 0 126 chr9 114604093 114604110 -9472062 + MT2B LTR ERVL 155 156 -445 3 1459 856 181 14 7 chr9 114604110 114604255 -9471917 + B1_Mur2 SINE Alu 2 147 -2 3 1459 299 276 52 89 chr9 114604147 114604282 -9471890 + RLTR25B LTR ERVK 442 571 -457 3 1459 488 248 28 0 chr9 114604381 114604490 -9471682 + ID_B1 SINE B4 110 221 -3 3 1459 648 223 108 31 chr9 114604494 114604688 -9471484 + B3 SINE B2 1 209 -7 3 1459 26 0 0 0 chr9 114604847 114604873 -9471299 + AT_rich Low_complexity Low_complexity 1 26 0 3 1459 781 182 29 0 chr9 114604873 114605018 -9471154 + B1_Mur1 SINE Alu 2 149 0 3 1459 1253 34 0 13 chr9 114605020 114605169 -9471003 + B1_Mus2 SINE Alu 1 147 0 3 1459 228 67 0 0 chr9 114605169 114605199 -9470973 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1459 316 283 14 14 chr9 114605220 114605360 -9470812 + (TA)n Simple_repeat Simple_repeat 2 141 0 3 1459 223 339 107 0 chr9 114605496 114605608 -9470564 + B1F SINE Alu 18 141 -8 3 1459 280 304 38 0 chr9 114605891 114605970 -9470202 - B4 SINE B4 -209 83 2 3 1459 769 159 71 21 chr9 114606656 114606797 -9469375 + B1_Mur2 SINE Alu 2 149 0 3 1459 1042 103 0 0 chr9 114607519 114607655 -9468517 + B1_Mur4 SINE Alu 5 140 -10 3 1459 197 33 33 0 chr9 114607655 114607685 -9468487 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1459 626 266 14 0 chr9 114607706 114607845 -9468327 + RSINE1 SINE B4 3 143 -22 3 1459 381 147 45 9 chr9 114607872 114607982 -9468190 + (TA)n Simple_repeat Simple_repeat 2 115 0 3 1459 1406 81 27 0 chr9 114608011 114608196 -9467976 - B2_Mm2 SINE B2 -5 190 1 3 1459 351 342 12 36 chr9 114608623 114608790 -9467382 + RSINE1 SINE B4 3 165 0 3 1459 275 283 22 2 chr9 114608985 114609073 -9467099 - PB1D10 SINE Alu -21 128 37 3 1459 306 70 0 0 chr9 114609288 114609304 -9466868 + (T)n Simple_repeat Simple_repeat 1 16 0 4 1459 1254 48 0 0 chr9 114609304 114609451 -9466721 - B1_Mus2 SINE Alu 0 147 1 4 1459 306 70 0 0 chr9 114609451 114609477 -9466695 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1459 429 252 35 109 chr9 114609502 114609676 -9466496 - RSINE1 SINE B4 -2 163 3 4 1459 412 294 28 35 chr9 114609690 114609831 -9466341 - ID_B1 SINE B4 0 224 85 4 1459 893 136 7 20 chr9 114609854 114610004 -9466168 - B1_Mus1 SINE Alu 0 148 1 4 1459 269 214 118 43 chr9 114610146 114610239 -9465933 - B1F1 SINE Alu -41 108 9 4 1459 1176 75 0 0 chr9 114610525 114610671 -9465501 - B1_Mus1 SINE Alu 0 148 3 4 1459 619 222 57 18 chr9 114611208 114611455 -9464717 - L1MA8 LINE L1 -242 6049 5783 4 1459 466 218 70 35 chr9 114611458 114611572 -9464600 - PB1D7 SINE Alu 0 120 3 4 1459 403 250 23 39 chr9 114611575 114611704 -9464468 - L1MA8 LINE L1 -517 5783 5657 4 1459 1407 55 61 0 chr9 114611809 114611990 -9464182 + B2_Mm2 SINE B2 3 194 -1 4 1459 433 261 78 13 chr9 114612064 114612207 -9463965 - B1F1 SINE Alu -6 143 4 4 1459 375 208 56 103 chr9 114612210 114612317 -9463855 + MTC LTR MaLR 1 102 -319 4 1459 367 171 0 95 chr9 114612323 114612407 -9463765 + B3 SINE B2 139 214 -2 4 1459 248 222 19 0 chr9 114612418 114612472 -9463700 + CT-rich Low_complexity Low_complexity 3 57 0 4 1459 861 280 30 0 chr9 114612519 114612719 -9463453 - ID_B1 SINE B4 -11 213 8 4 1459 1472 78 5 0 chr9 114612789 114612981 -9463191 - B2_Mm1a SINE B2 0 193 1 4 1459 1465 67 0 40 chr9 114613022 114613224 -9462948 - B2_Mm2 SINE B2 -1 194 1 4 1459 277 200 123 0 chr9 114613429 114613494 -9462678 + B1F SINE Alu 77 149 0 4 1459 625 287 38 6 chr9 114613503 114613661 -9462511 + B3A SINE B2 5 167 -31 4 1459 21 36 0 0 chr9 114613680 114613708 -9462464 + AT_rich Low_complexity Low_complexity 1 28 0 4 1459 944 88 72 14 chr9 114614713 114614852 -9461320 - B1_Mm SINE Alu 0 147 1 4 1459 234 0 0 0 chr9 114615096 114615122 -9461050 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 4 1459 207 0 0 0 chr9 114616205 114616228 -9459944 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 4 1459 943 130 29 0 chr9 114616232 114616370 -9459802 - B1_Mur4 SINE Alu -6 144 3 4 1459 387 234 9 113 chr9 114616375 114616481 -9459691 - B3A SINE B2 -4 194 100 4 1459 1340 216 52 25 chr9 114616489 114616903 -9459269 + RLTR15 LTR ERVK 4 359 0 4 1459 786 281 54 9 chr9 114616976 114617199 -9458973 - B4A SINE B4 -59 233 1 4 1459 260 247 53 63 chr9 114617235 114617262 -9458910 + B4A SINE B4 52 82 -210 4 1459 312 260 87 0 chr9 114617262 114617366 -9458806 + PB1D10 SINE Alu 5 117 0 4 1459 260 247 53 63 chr9 114617366 114617433 -9458739 + B4A SINE B4 83 145 -147 4 1459 354 224 179 2 chr9 114617379 114617481 -9458691 + PB1D10 SINE Alu 7 120 -29 4 1459 921 211 12 12 chr9 114617514 114617687 -9458485 - B3 SINE B2 0 216 44 4 1459 429 20 0 0 chr9 114617764 114617814 -9458358 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1459 428 193 118 42 chr9 114617880 114617999 -9458173 - RSINE1 SINE B4 -31 134 7 4 1459 249 287 80 36 chr9 114618496 114618608 -9457564 - PB1D10 SINE Alu 0 117 1 4 1459 1205 68 0 0 chr9 114618740 114618886 -9457286 + B1_Mus2 SINE Alu 2 147 0 4 1459 824 144 97 30 chr9 114618941 114619133 -9457039 - B3 SINE B2 0 216 12 4 1459 308 144 0 50 chr9 114619307 114619373 -9456799 - B1_Mur4 SINE Alu -90 59 1 4 1459 1187 68 0 0 chr9 114619405 114619552 -9456620 - B1_Mus2 SINE Alu 0 147 1 4 1459 699 174 30 101 chr9 114619558 114619756 -9456416 - B2_Mm2 SINE B2 -5 190 7 4 1459 1097 63 42 0 chr9 114619799 114619941 -9456231 + B1_Mus1 SINE Alu 1 148 0 4 1459 243 0 0 0 chr9 114619941 114619968 -9456204 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1459 247 268 0 51 chr9 114620036 114620095 -9456077 - BC1_Mm scRNA scRNA -85 67 12 4 1459 248 26 77 0 chr9 114620582 114620621 -9455551 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 4 1459 1174 48 0 39 chr9 114620621 114620774 -9455398 - B1_Mm SINE Alu 0 147 1 4 1459 927 83 114 0 chr9 114621102 114621234 -9454938 + B1_Mus2 SINE Alu 1 147 0 4 1459 702 185 59 0 chr9 114621339 114621458 -9454714 + B1_Mur4 SINE Alu 11 136 -14 4 1459 478 278 62 0 chr9 114621578 114621722 -9454450 - RSINE1 SINE B4 -4 161 9 4 1459 305 194 177 0 chr9 114621942 114622004 -9454168 - ID4_ SINE ID -9 74 2 4 1459 297 247 153 10 chr9 114623084 114623182 -9452990 - PB1D10 SINE Alu -5 112 1 4 1459 22 0 0 0 chr9 114623439 114623461 -9452711 + AT_rich Low_complexity Low_complexity 1 22 0 4 1459 510 238 29 44 chr9 114623504 114623640 -9452532 + ORR1D1 LTR MaLR 1 134 -240 4 1459 35 0 0 0 chr9 114623757 114623792 -9452380 + AT_rich Low_complexity Low_complexity 1 35 0 4 1459 923 142 7 0 chr9 114623800 114623941 -9452231 - B1_Mus1 SINE Alu -6 142 1 4 1459 480 234 0 9 chr9 114623946 114624058 -9452114 - ID_B1 SINE B4 -3 221 111 4 1459 577 271 28 28 chr9 114625669 114625851 -9450321 - B3A SINE B2 -16 182 1 4 1459 487 272 59 0 chr9 114625978 114626114 -9450058 + B1F1 SINE Alu 1 144 -5 4 1459 237 268 11 44 chr9 114626484 114626574 -9449598 - L2 LINE L2 -537 2882 2796 4 1459 856 197 119 5 chr9 114627314 114627508 -9448664 - B3 SINE B2 0 216 1 4 1459 621 228 73 0 chr9 114627515 114627651 -9448521 - B1_Mur1 SINE Alu -1 148 3 4 1459 23 0 0 0 chr9 114627673 114627696 -9448476 + AT_rich Low_complexity Low_complexity 1 23 0 4 1459 1313 98 16 11 chr9 114627730 114627916 -9448256 - B2_Mm2 SINE B2 -8 187 1 4 1459 1248 35 7 0 chr9 114627941 114628086 -9448086 - B1_Mm SINE Alu -1 146 1 4 1459 249 310 94 87 chr9 114628119 114628138 -9448034 + B4 SINE B4 77 96 -196 4 1459 684 192 58 0 chr9 114628138 114628258 -9447914 + B1_Mur4 SINE Alu 2 128 -22 4 1459 962 177 5 111 chr9 114628312 114628343 -9447829 - B3 SINE B2 -5 211 189 4 1459 1013 122 0 20 chr9 114628343 114628480 -9447692 + B1_Mus1 SINE Alu 2 138 -10 4 1459 183 42 0 0 chr9 114628480 114628504 -9447668 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1459 1013 122 0 20 chr9 114628504 114628516 -9447656 + B1_Mus1 SINE Alu 139 148 0 4 1459 962 177 5 111 chr9 114628516 114628700 -9447472 - B3 SINE B2 -28 188 19 4 1459 1295 27 0 0 chr9 114628740 114628886 -9447286 - B1_Mus2 SINE Alu 0 147 2 4 1459 642 26 0 0 chr9 114629086 114629162 -9447010 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1459 502 213 55 9 chr9 114630013 114630122 -9446050 + RSINE1 SINE B4 11 124 -41 4 1459 315 0 0 0 chr9 114630122 114630157 -9446015 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1459 513 0 0 0 chr9 114630157 114630213 -9445959 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1459 368 243 62 9 chr9 114630370 114630457 -9445715 + B3 SINE B2 76 167 -49 4 1459 189 0 0 0 chr9 114630457 114630478 -9445694 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1459 368 243 62 9 chr9 114630478 114630502 -9445670 + B3 SINE B2 168 192 -24 4 1459 268 255 66 84 chr9 114630526 114630693 -9445479 + RSINE1 SINE B4 2 165 0 4 1459 237 223 167 21 chr9 114631282 114631378 -9444794 - B1_Mur4 SINE Alu 0 150 41 4 1459 216 0 0 0 chr9 114631378 114631402 -9444770 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1459 243 0 0 0 chr9 114631402 114631429 -9444743 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1459 579 269 8 8 chr9 114631479 114631610 -9444562 - RSINE1 SINE B4 -33 132 2 4 1459 1131 109 80 0 chr9 114631848 114632023 -9444149 - B2_Mm2 SINE B2 -3 192 4 4 1459 287 219 15 136 chr9 114632102 114632234 -9443938 - PB1D10 SINE Alu 0 117 2 4 1459 919 69 131 0 chr9 114632687 114632817 -9443355 - B1_Mm SINE Alu 0 147 1 4 1459 192 152 0 0 chr9 114633312 114633345 -9442827 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1459 431 256 68 17 chr9 114633710 114633839 -9442333 - PB1D10 SINE Alu -16 133 1 4 1459 808 258 13 0 chr9 114633839 114633913 -9442259 - ID SINE ID -141 83 8 4 1459 1245 27 7 0 chr9 114633932 114634078 -9442094 - B1_Mus2 SINE Alu 0 147 1 4 1459 516 249 23 80 chr9 114634166 114634341 -9441831 - RSINE1 SINE B4 0 165 1 4 1459 1153 235 186 25 chr9 114634407 114634847 -9441325 - Lx8 LINE L1 0 7473 6963 4 1459 236 321 82 9 chr9 114634940 114634999 -9441173 + ORR1D1 LTR MaLR 1 60 -314 4 1459 1515 28 0 0 chr9 114634999 114635179 -9440993 + (TGG)n Simple_repeat Simple_repeat 1 180 0 4 1459 236 321 82 9 chr9 114635179 114635229 -9440943 + ORR1D1 LTR MaLR 61 117 -257 4 1459 1333 102 11 0 chr9 114635322 114635509 -9440663 + B2_Mm1t SINE B2 1 189 -4 4 1459 926 167 43 11 chr9 114635564 114635752 -9440420 + B2_Mm2 SINE B2 2 195 0 4 1459 227 192 115 0 chr9 114635844 114635896 -9440276 - B1_Mur3 SINE Alu -16 133 76 4 1459 298 288 122 129 chr9 114636054 114636325 -9439847 - B4 SINE B4 -22 270 2 4 1459 339 182 182 0 chr9 114636361 114636438 -9439734 - B1_Mus2 SINE Alu 0 147 57 4 1459 567 276 25 6 chr9 114637044 114637201 -9438971 - RSINE1 SINE B4 -2 163 4 4 1459 24 0 0 0 chr9 114637201 114637225 -9438947 + AT_rich Low_complexity Low_complexity 1 24 0 4 1459 897 209 58 71 chr9 114637225 114637426 -9438746 - ID_B1 SINE B4 0 224 25 4 1459 2355 65 11 113 chr9 114637426 114637790 -9438382 - ORR1A2 LTR MaLR 0 327 1 4 1459 897 209 58 71 chr9 114637790 114637814 -9438358 - ID SINE ID -200 24 2 4 1459 890 234 80 10 chr9 114638072 114638271 -9437901 + B3 SINE B2 1 213 -3 5 1459 237 83 0 0 chr9 114638311 114638347 -9437825 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1459 919 228 12 0 chr9 114638370 114638537 -9437635 - B3A SINE B2 -29 169 1 5 1459 279 261 98 98 chr9 114638562 114638766 -9437406 - L1MA4 LINE L1 -369 5931 5728 5 1459 980 269 64 8 chr9 114638948 114639214 -9436958 + B4 SINE B4 7 287 -5 5 1459 219 115 32 32 chr9 114639345 114639408 -9436764 + G-rich Low_complexity Low_complexity 1 63 0 5 1459 435 314 5 91 chr9 114639409 114639470 -9436702 + ID_B1 SINE B4 39 208 -16 5 1459 477 280 32 0 chr9 114639470 114639595 -9436577 + B1F SINE Alu 5 133 -16 5 1459 355 248 211 9 chr9 114639654 114639768 -9436404 + RSINE1 SINE B4 1 137 -28 5 1459 310 151 0 27 chr9 114639772 114639847 -9436325 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 5 1459 1267 27 0 7 chr9 114639923 114640072 -9436100 + B1_Mus1 SINE Alu 1 148 0 5 1459 24 0 0 0 chr9 114640072 114640096 -9436076 + AT_rich Low_complexity Low_complexity 1 24 0 5 1459 312 269 0 13 chr9 114641161 114641240 -9434932 - Charlie26a DNA MER1_type -114 211 134 5 1459 242 220 33 17 chr9 114641434 114641494 -9434678 + CT-rich Low_complexity Low_complexity 2 62 0 5 1459 939 199 77 44 chr9 114641494 114641732 -9434440 - ID_B1 SINE B4 -46 246 1 5 1459 250 213 0 96 chr9 114642181 114642264 -9433908 - RLTR25A LTR ERVK -507 596 522 5 1459 685 138 9 27 chr9 114642197 114642309 -9433863 - B1_Mur4 SINE Alu -36 114 5 5 1459 331 269 67 0 chr9 114643269 114643388 -9432784 - L1MD LINE L1 -601 5758 5632 5 1459 270 0 0 0 chr9 114643528 114643558 -9432614 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1459 262 244 12 11 chr9 114643642 114643733 -9432439 - B1F2 SINE Alu -20 100 9 5 1459 2836 123 103 32 chr9 114644158 114644572 -9431600 - RLTR13D1 LTR ERVK 0 1023 354 5 1459 1383 94 21 0 chr9 114644572 114644763 -9431409 - B2_Mm2 SINE B2 0 195 1 5 1459 2836 196 125 66 chr9 114644763 114645032 -9431140 - RLTR13D1 LTR ERVK -480 543 252 5 1459 1634 31 5 0 chr9 114645032 114645223 -9430949 - B2_Mm1t SINE B2 0 193 2 5 1459 2368 239 139 86 chr9 114645223 114645510 -9430662 - RLTR13D1 LTR ERVK -706 317 2 5 1459 229 256 50 109 chr9 114646126 114646158 -9430014 - PB1D10 SINE Alu 0 117 23 5 1459 231 266 0 72 chr9 114646158 114646227 -9429945 - ID_B1 SINE B4 -57 167 104 5 1459 280 250 125 0 chr9 114646723 114646795 -9429377 - PB1D10 SINE Alu -32 85 5 5 1459 988 135 0 0 chr9 114647008 114647156 -9429016 - B1_Mur3 SINE Alu 0 149 2 5 1459 244 247 195 0 chr9 114647275 114647352 -9428820 + B4A SINE B4 50 141 -151 5 1459 1852 146 63 30 chr9 114647475 114647762 -9428410 - RMER6C LTR ERVK -93 663 359 5 1459 764 21 11 0 chr9 114647762 114647856 -9428316 + (TC)n Simple_repeat Simple_repeat 1 95 0 5 1459 1852 161 188 2 chr9 114647856 114648043 -9428129 - RMER6C LTR ERVK -314 376 136 5 1459 265 208 19 19 chr9 114648225 114648279 -9427893 + RSINE1 SINE B4 91 144 -21 5 1459 285 313 0 0 chr9 114648311 114648378 -9427794 - MIR SINE MIR -171 91 25 5 1459 230 226 61 51 chr9 114648378 114648407 -9427765 - YREP_Mm Unknown Unknown -1474 338 307 5 1459 1027 188 39 10 chr9 114648407 114648611 -9427561 - B3 SINE B2 -5 211 2 5 1459 230 226 61 51 chr9 114648611 114648679 -9427493 - YREP_Mm Unknown Unknown -1506 306 240 5 1459 350 268 36 1 chr9 114648679 114648714 -9427458 + PB1D10 SINE Alu 13 120 0 5 1459 198 103 0 0 chr9 114648804 114648833 -9427339 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1459 622 162 0 64 chr9 114648857 114648982 -9427190 + PB1D9 SINE Alu 2 118 -2 5 1459 364 246 82 108 chr9 114649421 114649542 -9426630 - B4A SINE B4 -4 288 164 5 1459 246 258 213 11 chr9 114649542 114649636 -9426536 - PB1D9 SINE Alu -7 113 1 5 1459 364 238 75 108 chr9 114649636 114649805 -9426367 - B4A SINE B4 -129 163 3 5 1459 254 356 0 0 chr9 114650108 114650198 -9425974 + CT-rich Low_complexity Low_complexity 5 94 0 5 1459 287 130 0 0 chr9 114650205 114650251 -9425921 - ID4_ SINE ID -33 50 5 5 1459 327 308 22 9 chr9 114650265 114650385 -9425787 - B1F SINE Alu -8 141 19 5 1459 513 104 0 0 chr9 114650556 114650633 -9425539 + (TC)n Simple_repeat Simple_repeat 1 77 0 5 1459 936 157 0 0 chr9 114650633 114650773 -9425399 - B1_Mus2 SINE Alu -6 141 2 5 1459 1460 65 22 0 chr9 114650784 114650969 -9425203 - B2_Mm2 SINE B2 -5 190 2 5 1459 405 54 0 0 chr9 114651236 114651292 -9424880 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1459 573 256 145 18 chr9 114651354 114651534 -9424638 + B3 SINE B2 16 216 0 5 1459 180 0 0 0 chr9 114651872 114651892 -9424280 + (C)n Simple_repeat Simple_repeat 1 20 0 5 1459 180 0 0 0 chr9 114651892 114651911 -9424261 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1459 1579 42 16 0 chr9 114653810 114654000 -9422172 - B2_Mm1a SINE B2 0 193 1 5 1459 504 0 0 0 chr9 114654537 114654593 -9421579 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1459 800 78 164 45 chr9 114654594 114654728 -9421444 - B2_Mm2 SINE B2 -45 150 1 5 1459 324 294 212 12 chr9 114655107 114655272 -9420900 + B3A SINE B2 1 198 0 5 1459 215 322 120 17 chr9 114655285 114655402 -9420770 + B3A SINE B2 70 198 0 5 1459 289 0 49 0 chr9 114655902 114655943 -9420229 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 5 1459 357 332 88 60 chr9 114657526 114657843 -9418329 - ORR1E LTR MaLR -14 345 20 5 1459 351 294 21 21 chr9 114658608 114658702 -9417470 + PB1D10 SINE Alu 2 95 -22 5 1459 412 168 26 16 chr9 114658721 114658806 -9417366 + B1_Mur4 SINE Alu 45 129 -21 5 1459 531 300 0 0 chr9 114658928 114659058 -9417114 - ID_B1 SINE B4 -3 221 92 5 1459 295 207 53 106 chr9 114659760 114659811 -9416361 + MT2B2 LTR ERVL 112 154 -430 5 1459 698 169 84 42 chr9 114659811 114659953 -9416219 + B1_Mur4 SINE Alu 3 150 0 5 1459 703 215 147 26 chr9 114659995 114660186 -9415986 + B4 SINE B4 8 221 -71 5 1459 444 37 0 0 chr9 114660407 114660461 -9415711 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 5 1459 1162 51 0 0 chr9 114660461 114660598 -9415574 - B1_Mus1 SINE Alu -10 138 2 5 1459 363 277 69 10 chr9 114660622 114660724 -9415448 - RSINE1 SINE B4 -2 163 56 5 1459 1011 139 18 35 chr9 114660780 114660951 -9415221 + B2_Mm2 SINE B2 1 168 -27 5 1459 325 157 20 0 chr9 114661021 114661072 -9415100 - ID_B1 SINE B4 -74 150 99 5 1459 780 200 21 0 chr9 114661079 114661219 -9414953 + B3 SINE B2 73 215 -1 5 1459 497 221 18 71 chr9 114661243 114661355 -9414817 + PB1D7 SINE Alu 2 107 -13 5 1459 794 179 0 46 chr9 114661355 114661507 -9414665 - B1_Mur4 SINE Alu 0 150 6 5 1459 464 158 0 0 chr9 114661742 114661818 -9414354 + MT2A LTR ERVL 1 76 -457 5 1459 306 0 0 0 chr9 114662594 114662628 -9413544 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1459 438 108 0 0 chr9 114662848 114662913 -9413259 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1459 776 156 16 0 chr9 114662994 114663116 -9413056 + B1_Mus1 SINE Alu 25 148 0 5 1459 433 215 10 31 chr9 114663172 114663268 -9412904 - PB1D10 SINE Alu 0 117 24 5 1459 246 311 193 0 chr9 114663323 114663442 -9412730 - ID_B1 SINE B4 -72 152 11 5 1459 1451 88 0 10 chr9 114663478 114663673 -9412499 + B2_Mm2 SINE B2 3 195 0 5 1459 573 250 8 16 chr9 114663800 114663922 -9412250 + ID_B1 SINE B4 93 213 -11 5 1459 625 239 81 12 chr9 114664191 114664352 -9411820 - B3 SINE B2 -7 209 38 5 1459 630 0 0 0 chr9 114665081 114665151 -9411021 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1459 458 67 0 0 chr9 114665175 114665235 -9410937 - B1_Mus2 SINE Alu -17 130 71 5 1459 341 280 40 10 chr9 114665311 114665412 -9410760 + ID_B1 SINE B4 80 183 -41 5 1459 1151 58 0 0 chr9 114665412 114665549 -9410623 + B1_Mus2 SINE Alu 2 138 -9 5 1459 288 53 0 0 chr9 114665549 114665587 -9410585 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1459 465 19 0 0 chr9 114665625 114665679 -9410493 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1459 847 239 48 11 chr9 114665683 114665869 -9410303 + ID_B1 SINE B4 1 193 -31 5 1459 180 0 0 0 chr9 114665989 114666009 -9410163 + (CCCCCA)n Simple_repeat Simple_repeat 4 23 0 5 1459 255 31 0 0 chr9 114666481 114666513 -9409659 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1459 245 246 32 16 chr9 114666542 114666604 -9409568 - PB1D10 SINE Alu -43 74 12 5 1459 410 283 0 10 chr9 114666654 114666754 -9409418 + PB1D7 SINE Alu 9 107 -13 5 1459 664 133 136 40 chr9 114666987 114667112 -9409060 - B1F2 SINE Alu -8 141 5 5 1459 1289 95 5 11 chr9 114667125 114667316 -9408856 - B2_Mm2 SINE B2 -1 194 5 5 1459 228 35 0 0 chr9 114667628 114667657 -9408515 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1459 219 36 0 0 chr9 114667657 114667685 -9408487 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1459 571 271 6 19 chr9 114669788 114669858 -9406314 + ID SINE ID 14 81 -143 5 1459 335 266 35 17 chr9 114669858 114669973 -9406199 + PB1D10 SINE Alu 1 117 0 5 1459 744 226 89 5 chr9 114670310 114670501 -9405671 + ID_B1 SINE B4 5 211 -13 5 1459 438 289 21 21 chr9 114670526 114670671 -9405501 + B1F SINE Alu 5 149 0 5 1459 576 338 75 24 chr9 114671558 114671852 -9404320 + L1M4 LINE L1 3949 4257 -1889 5 1459 257 113 17 0 chr9 114671941 114671986 -9404186 + B1_Mur4 SINE Alu 58 107 -13 5 1459 363 122 23 47 chr9 114672935 114673021 -9403151 + (TATG)n Simple_repeat Simple_repeat 3 86 0 6 1459 669 216 311 0 chr9 114673021 114673243 -9402929 - B4A SINE B4 0 292 2 6 1459 235 295 136 62 chr9 114673356 114673369 -9402803 - B2_Mm1t SINE B2 -2 191 180 6 1459 1142 48 0 7 chr9 114673369 114673516 -9402656 - B1_Mus1 SINE Alu -1 147 2 6 1459 546 217 139 20 chr9 114673516 114673679 -9402493 - B3A SINE B2 -14 179 2 6 1459 23 0 0 0 chr9 114673728 114673751 -9402421 + AT_rich Low_complexity Low_complexity 1 23 0 6 1459 604 198 49 8 chr9 114673771 114673885 -9402287 + B1_Mur1 SINE Alu 21 140 -9 6 1459 222 37 0 0 chr9 114673885 114673912 -9402260 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 6 1459 252 0 0 0 chr9 114673922 114673950 -9402222 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1459 605 220 155 7 chr9 114674457 114674599 -9401573 + RSINE1 SINE B4 3 165 0 6 1459 318 26 0 0 chr9 114674599 114674638 -9401534 + (CATA)n Simple_repeat Simple_repeat 4 42 0 6 1459 457 143 0 13 chr9 114674708 114674786 -9401386 - ID_B1 SINE B4 -2 222 146 6 1459 951 206 21 0 chr9 114674818 114675007 -9401165 - ID_B1 SINE B4 -24 200 8 6 1459 1085 43 0 28 chr9 114675349 114675491 -9400681 - B1_Mus2 SINE Alu -9 138 1 6 1459 426 229 59 11 chr9 114675538 114675673 -9400499 + PB1D9 SINE Alu 1 148 -1 6 1459 532 233 206 0 chr9 114675686 114675866 -9400306 + ID_B1 SINE B4 1 217 -7 6 1459 255 296 12 24 chr9 114675934 114676017 -9400155 + RSINE1 SINE B4 83 164 -1 6 1459 264 30 0 0 chr9 114676026 114676059 -9400113 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1459 225 297 0 0 chr9 114676507 114676571 -9399601 + RSINE1 SINE B4 20 83 -82 6 1459 387 0 0 0 chr9 114676587 114676630 -9399542 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1459 390 69 0 0 chr9 114676630 114676688 -9399484 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1459 198 0 0 0 chr9 114676688 114676710 -9399462 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1459 231 239 19 146 chr9 114678010 114678113 -9398059 + L1M3 LINE L1 4010 4099 -2041 6 1459 1187 28 14 0 chr9 114678255 114678399 -9397773 + B1_Mus2 SINE Alu 2 147 0 6 1459 597 71 0 0 chr9 114678540 114678625 -9397547 - B1_Mur4 SINE Alu 0 150 66 6 1459 256 295 179 13 chr9 114678805 114678956 -9397216 + L1MC LINE L1 4621 4796 -1350 6 1459 419 256 214 30 chr9 114679005 114679206 -9396966 + B4 SINE B4 1 238 -54 6 1459 662 111 127 8 chr9 114679205 114679323 -9396849 + B1_Mur2 SINE Alu 9 140 -9 6 1459 274 203 105 26 chr9 114679753 114679829 -9396343 - RSINE1 SINE B4 -83 82 1 6 1459 1047 57 36 10 chr9 114679838 114680029 -9396143 - B2_Mm2 SINE B2 0 195 3 6 1459 255 325 83 0 chr9 114680284 114680404 -9395768 - MLT1D LTR MaLR -68 437 308 6 1459 1105 106 0 11 chr9 114680462 114680644 -9395528 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1459 439 223 274 0 chr9 114681019 114681183 -9394989 - B3A SINE B2 -6 210 2 6 1459 1925 186 5 14 chr9 114681183 114681554 -9394618 - ORR1D1 LTR MaLR -6 368 1 6 1459 664 240 141 10 chr9 114681858 114682056 -9394116 + B4A SINE B4 1 224 -68 6 1459 722 75 18 0 chr9 114682062 114682184 -9393988 + B1_Mus2 SINE Alu 2 136 -12 6 1459 192 77 0 0 chr9 114682187 114682213 -9393959 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 1459 513 47 0 0 chr9 114682431 114682495 -9393677 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1459 397 268 155 35 chr9 114682651 114682751 -9393421 - RMER30 DNA MER1_type -3 199 80 6 1459 423 0 0 0 chr9 114682751 114682798 -9393374 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1459 216 0 0 0 chr9 114682798 114682821 -9393351 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1459 397 268 155 35 chr9 114682821 114682893 -9393279 - RMER30 DNA MER1_type -123 79 6 6 1459 504 0 0 0 chr9 114683011 114683067 -9393105 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1459 563 249 92 38 chr9 114683482 114683666 -9392506 + B3A SINE B2 1 194 -4 6 1459 480 220 59 0 chr9 114683769 114683887 -9392285 + ID_B1 SINE B4 100 224 0 6 1459 21 0 0 0 chr9 114685315 114685336 -9390836 + AT_rich Low_complexity Low_complexity 1 21 0 6 1459 262 211 18 0 chr9 114685343 114685400 -9390772 + ID_B1 SINE B4 79 136 -88 6 1459 410 138 12 70 chr9 114685350 114685436 -9390736 + B1_Mur3 SINE Alu 5 85 -64 6 1459 193 255 0 52 chr9 114685498 114685556 -9390616 - L3 LINE CR1 -3713 776 722 6 1459 532 268 7 40 chr9 114685672 114685820 -9390352 + ID_B1 SINE B4 73 215 -9 6 1459 514 301 141 21 chr9 114685842 114686062 -9390110 + B4A SINE B4 20 270 -22 6 1459 330 26 0 0 chr9 114686062 114686101 -9390071 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1459 514 301 141 21 chr9 114686101 114686121 -9390051 + B4A SINE B4 271 289 -3 6 1459 483 154 0 0 chr9 114686395 114686473 -9389699 - B2_Mm2 SINE B2 -115 80 3 6 1459 495 110 43 21 chr9 114686700 114686793 -9389379 - B1_Mur1 SINE Alu 0 149 55 6 1459 573 191 15 30 chr9 114686842 114686977 -9389195 - ID_B1 SINE B4 -10 214 82 6 1459 849 260 95 73 chr9 114687217 114687735 -9388437 - L1MB8 LINE L1 -47 6131 5603 6 1459 732 141 24 12 chr9 114687737 114687902 -9388270 + (TG)n Simple_repeat Simple_repeat 1 167 0 6 1460 249 273 70 75 chr9 114688296 114688482 -9387690 + RLTR25B LTR ERVK 315 499 -529 6 1460 316 306 49 63 chr9 114688379 114688522 -9387650 + B4 SINE B4 81 221 -71 6 1460 675 169 53 15 chr9 114688394 114688526 -9387646 + B1_Mus2 SINE Alu 11 147 0 6 1460 491 280 78 16 chr9 114688642 114688834 -9387338 - ID_B1 SINE B4 -17 207 4 6 1460 682 193 117 6 chr9 114688878 114689040 -9387132 - B3A SINE B2 -18 180 1 6 1460 237 224 0 17 chr9 114691392 114691451 -9384721 + CT-rich Low_complexity Low_complexity 4 61 0 6 1460 853 151 0 14 chr9 114691479 114691620 -9384552 + B1_Mur4 SINE Alu 12 150 0 6 1460 521 223 9 9 chr9 114691630 114691743 -9384429 - B1F2 SINE Alu -13 136 24 6 1460 354 45 0 0 chr9 114691836 114691880 -9384292 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1460 819 134 0 0 chr9 114692154 114692281 -9383891 - B1_Mus1 SINE Alu -16 132 6 6 1460 453 230 39 123 chr9 114692281 114692308 -9383864 - B4 SINE B4 -82 210 70 6 1460 934 195 70 20 chr9 114692333 114692532 -9383640 - B3 SINE B2 -6 210 2 6 1460 825 108 8 0 chr9 114692805 114692934 -9383238 - B1_Mur2 SINE Alu -9 140 11 6 1460 476 260 38 60 chr9 114692934 114692989 -9383183 - ID_B1 SINE B4 -9 215 36 6 1460 45 0 0 0 chr9 114693103 114693148 -9383024 + AT_rich Low_complexity Low_complexity 1 45 0 6 1460 281 313 17 0 chr9 114693198 114693312 -9382860 - B1F2 SINE Alu 0 120 1 6 1460 681 235 18 18 chr9 114693312 114693394 -9382778 - B4A SINE B4 -207 85 4 6 1460 216 0 0 0 chr9 114694053 114694077 -9382095 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1460 536 244 16 25 chr9 114694077 114694199 -9381973 - RSINE1 SINE B4 -41 124 4 6 1460 257 178 0 0 chr9 114694427 114694472 -9381700 - RMER5 LTR ERV1 -12 522 478 6 1460 614 195 132 44 chr9 114694472 114694654 -9381518 - RLTR28B LTR ERVL 0 524 327 6 1460 775 147 134 0 chr9 114694652 114694809 -9381363 - RLTR28B LTR ERVL -303 178 1 6 1460 1436 256 72 30 chr9 114694809 114695271 -9380901 - RMER5 LTR ERV1 -52 482 1 6 1460 378 0 0 0 chr9 114695339 114695381 -9380791 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 6 1460 201 74 0 0 chr9 114695835 114695862 -9380310 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1460 431 240 137 15 chr9 114695862 114695893 -9380279 - B1_Mur1 SINE Alu 0 149 3 6 1460 348 226 27 54 chr9 114695893 114695993 -9380179 - MT2B LTR ERVL -339 262 167 6 1460 1966 162 38 3 chr9 114695993 114696358 -9379814 - ORR1C1 LTR MaLR 0 378 1 6 1460 348 226 27 54 chr9 114696358 114696369 -9379803 - MT2B LTR ERVL -435 166 155 6 1460 1039 170 59 45 chr9 114696455 114696677 -9379495 - URR1B DNA MER1_type 0 225 1 6 1460 423 0 0 0 chr9 114697215 114697262 -9378910 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1460 468 252 142 14 chr9 114697275 114697416 -9378756 - B4 SINE B4 -26 266 108 6 1460 276 235 122 12 chr9 114697518 114697600 -9378572 - ID_B1 SINE B4 -54 170 80 6 1460 297 211 183 0 chr9 114697641 114697712 -9378460 - B4 SINE B4 -207 85 2 6 1460 192 158 0 0 chr9 114698181 114698219 -9377953 + (CACG)n Simple_repeat Simple_repeat 4 41 0 6 1460 515 264 0 52 chr9 114698222 114698394 -9377778 + RSINE1 SINE B4 3 165 0 6 1460 438 20 0 0 chr9 114698670 114698721 -9377451 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 6 1460 468 309 16 0 chr9 114699046 114699169 -9377003 - RSINE1 SINE B4 -33 132 8 6 1460 668 118 9 9 chr9 114700356 114700467 -9375705 + B1_Mur4 SINE Alu 40 150 0 6 1460 781 209 126 0 chr9 114700587 114700778 -9375394 + ID_B1 SINE B4 9 223 -1 6 1460 221 333 71 47 chr9 114700661 114700831 -9375341 + FAM SINE Alu 138 311 0 6 1460 659 203 81 0 chr9 114701419 114701567 -9374605 + B3 SINE B2 1 160 -56 6 1460 180 0 0 0 chr9 114701590 114701610 -9374562 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1460 423 0 0 0 chr9 114701703 114701750 -9374422 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1460 345 230 11 33 chr9 114701777 114701867 -9374305 - B4A SINE B4 -194 98 11 6 1460 312 137 0 0 chr9 114701886 114701937 -9374235 + (TCC)n Simple_repeat Simple_repeat 2 52 0 6 1460 792 214 46 25 chr9 114701955 114702152 -9374020 - B3 SINE B2 -1 215 15 6 1460 258 125 0 0 chr9 114702312 114702360 -9373812 + (C)n Simple_repeat Simple_repeat 1 48 0 6 1460 386 253 11 0 chr9 114702361 114702448 -9373724 - RSINE1 SINE B4 -77 88 1 6 1460 385 207 40 14 chr9 114702448 114702544 -9373628 - PB1D7 SINE Alu -39 111 17 7 1460 1102 62 0 14 chr9 114702869 114703016 -9373156 + B1_Mus2 SINE Alu 3 147 0 7 1460 285 29 0 0 chr9 114703016 114703050 -9373122 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1460 717 219 155 5 chr9 114703357 114703550 -9372622 - ID_B1 SINE B4 -2 222 1 7 1460 351 0 0 0 chr9 114703979 114704018 -9372154 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1460 336 276 35 95 chr9 114704113 114704229 -9371943 - B1F2 SINE Alu -35 114 6 7 1460 231 88 0 0 chr9 114704233 114704267 -9371905 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 7 1460 581 281 22 0 chr9 114704267 114704406 -9371766 - ID_B1 SINE B4 -13 211 70 7 1460 211 324 15 0 chr9 114704606 114704674 -9371498 - ID4 SINE ID -2 81 13 7 1460 1136 44 119 0 chr9 114705494 114705654 -9370518 - B2_Mm2 SINE B2 -14 181 3 7 1460 205 176 0 0 chr9 114706231 114706265 -9369907 + (ATG)n Simple_repeat Simple_repeat 1 34 0 7 1460 427 254 340 5 chr9 114706268 114706474 -9369698 - B4 SINE B4 -16 276 2 7 1460 314 330 233 0 chr9 114707904 114708084 -9368088 - MER58A DNA MER1_type -1 223 2 7 1460 2197 191 14 7 chr9 114708348 114708765 -9367407 - MTC LTR MaLR 0 421 2 7 1460 507 283 7 33 chr9 114709173 114709323 -9366849 + ID_B1 SINE B4 2 147 -77 7 1460 642 282 52 23 chr9 114709333 114709507 -9366665 + B3A SINE B2 1 179 -19 7 1460 310 204 19 0 chr9 114709509 114709612 -9366560 + (CA)n Simple_repeat Simple_repeat 2 106 0 7 1460 222 176 0 0 chr9 114709622 114709673 -9366499 + (TA)n Simple_repeat Simple_repeat 2 52 0 7 1460 612 0 0 0 chr9 114710861 114710929 -9365243 + (GA)n Simple_repeat Simple_repeat 1 68 0 7 1460 757 182 28 7 chr9 114711077 114711221 -9364951 + B1_Mur1 SINE Alu 2 148 -1 7 1460 806 156 50 0 chr9 114711668 114711809 -9364363 + MTC LTR MaLR 173 320 -101 7 1460 246 62 0 0 chr9 114711826 114711858 -9364314 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1460 1698 146 93 8 chr9 114711879 114712245 -9363927 + RMER17C LTR ERVK 14 410 0 7 1460 945 122 0 0 chr9 114712441 114712588 -9363584 + (CATA)n Simple_repeat Simple_repeat 1 147 0 7 1460 210 143 0 0 chr9 114712605 114712640 -9363532 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1460 616 352 17 22 chr9 114713128 114713360 -9362812 + MER34 LTR ERV1 18 248 -294 7 1460 1261 96 32 5 chr9 114713372 114713560 -9362612 + B2_Mm2 SINE B2 2 194 -1 7 1460 293 296 83 100 chr9 114713628 114713748 -9362424 - RSINE1 SINE B4 0 165 48 7 1460 307 70 0 0 chr9 114714763 114714806 -9361366 - PB1D9 SINE Alu -76 44 2 7 1460 821 37 0 9 chr9 114714853 114714963 -9361209 + B1_Mus1 SINE Alu 40 148 0 7 1460 1253 96 17 0 chr9 114714969 114715146 -9361026 - B2_Mm2 SINE B2 -14 181 2 7 1460 235 272 66 66 chr9 114715395 114715517 -9360655 + B2_Mm1t SINE B2 68 189 -4 7 1460 427 304 78 57 chr9 114715795 114716025 -9360147 - RLTR42-int LTR ERVK -4122 1400 1166 7 1460 359 271 76 23 chr9 114716120 114716252 -9359920 - B4A SINE B4 -27 265 127 7 1460 238 220 0 0 chr9 114716719 114716769 -9359403 - RSINE1 SINE B4 -108 57 8 7 1460 290 313 0 12 chr9 114717006 114717090 -9359082 + B4A SINE B4 5 87 -205 7 1460 331 203 135 0 chr9 114717318 114717392 -9358780 - PB1D7 SINE Alu 0 120 37 7 1460 648 272 70 5 chr9 114717636 114717821 -9358351 - ID_B1 SINE B4 -27 197 1 7 1460 334 331 19 58 chr9 114718130 114718284 -9357888 + B1F SINE Alu 2 149 0 7 1460 1094 192 5 19 chr9 114718290 114718497 -9357675 + B3 SINE B2 3 206 -10 7 1460 314 127 18 18 chr9 114718515 114718571 -9357601 + ID SINE ID 19 74 -150 7 1460 273 175 17 17 chr9 114718519 114718577 -9357595 + tRNA-Ala-GCY_ tRNA tRNA 16 73 -2 7 1460 244 202 110 37 chr9 114718573 114718655 -9357517 + MTE2a LTR MaLR 270 357 -22 7 1460 722 256 36 23 chr9 114718762 114718982 -9357190 - ID_B1 SINE B4 -1 223 1 7 1460 198 0 0 0 chr9 114719002 114719024 -9357148 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 7 1460 846 136 13 1 chr9 114719034 114719181 -9356991 - B2_Mm2 SINE B2 -57 159 1 7 1460 498 328 8 0 chr9 114719196 114719327 -9356845 + B3A SINE B2 6 137 -61 7 1460 522 90 16 14 chr9 114719337 114719455 -9356717 - B1_Mus2 SINE Alu 0 150 35 7 1460 240 204 124 11 chr9 114719426 114719515 -9356657 + B3 SINE B2 115 213 -3 7 1460 337 246 0 0 chr9 114719553 114719622 -9356550 + PB1D9 SINE Alu 51 119 -1 7 1460 282 29 0 0 chr9 114719638 114719673 -9356499 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1460 215 333 67 0 chr9 114720539 114720614 -9355558 + B3 SINE B2 1 80 -136 7 1460 278 145 32 0 chr9 114720724 114720786 -9355386 + (CACG)n Simple_repeat Simple_repeat 1 64 0 7 1460 547 262 25 0 chr9 114721260 114721382 -9354790 + RSINE1 SINE B4 3 127 -38 7 1460 291 93 0 0 chr9 114721398 114721441 -9354731 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1460 3389 46 2 0 chr9 114722035 114722430 -9353742 + MTA_Mm LTR MaLR 1 396 0 7 1460 282 135 38 19 chr9 114722591 114722644 -9353528 + B1F2 SINE Alu 43 96 -53 7 1460 1041 103 14 14 chr9 114722811 114722958 -9353214 - B1_Mus2 SINE Alu 0 147 1 7 1460 207 0 0 0 chr9 114722958 114722981 -9353191 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1460 1100 129 39 6 chr9 114723013 114723192 -9352980 - B2_Mm2 SINE B2 -8 187 3 7 1460 782 193 187 6 chr9 114723235 114723417 -9352755 - B3 SINE B2 0 216 2 7 1460 380 286 75 81 chr9 114723622 114723657 -9352515 - B4 SINE B4 -34 258 100 7 1460 561 264 40 0 chr9 114723657 114723782 -9352390 - B1F2 SINE Alu -5 144 15 7 1460 362 205 132 118 chr9 114724179 114724323 -9351849 + B4A SINE B4 1 146 -146 7 1460 249 33 0 0 chr9 114724385 114724415 -9351757 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1460 374 281 119 28 chr9 114725039 114725215 -9350957 - ORR1E LTR MaLR -164 195 4 7 1460 594 186 329 18 chr9 114725215 114725379 -9350793 + B3 SINE B2 2 216 0 7 1460 545 214 52 73 chr9 114725677 114725699 -9350473 + B4 SINE B4 73 205 -87 7 1460 846 61 88 0 chr9 114725699 114725813 -9350359 + B1_Mus2 SINE Alu 1 124 -23 7 1460 279 0 64 21 chr9 114725813 114725860 -9350312 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 1460 21 57 0 0 chr9 114725867 114725902 -9350270 + AT_rich Low_complexity Low_complexity 1 35 0 7 1460 1409 76 0 16 chr9 114725913 114726101 -9350071 + B2_Mm2 SINE B2 1 185 -10 7 1460 396 0 0 0 chr9 114726117 114726161 -9350011 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1460 626 289 30 40 chr9 114726274 114726472 -9349700 + MER20 DNA MER1_type 7 202 -17 7 1460 705 228 0 39 chr9 114726841 114726996 -9349176 - B1_Mur1 SINE Alu 0 149 1 7 1460 765 325 17 30 chr9 114727072 114727304 -9348868 + B4A SINE B4 1 229 -63 7 1460 309 26 0 0 chr9 114727443 114727481 -9348691 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1460 588 169 14 0 chr9 114727561 114727846 -9348326 + (CA)n Simple_repeat Simple_repeat 1 289 0 7 1460 240 200 0 0 chr9 114727866 114727936 -9348236 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1460 369 145 0 0 chr9 114728545 114728607 -9347565 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1460 997 128 0 39 chr9 114728666 114728821 -9347351 - B1_Mur4 SINE Alu -1 149 1 7 1460 198 103 0 0 chr9 114728883 114728912 -9347260 + (TTAG)n Simple_repeat Simple_repeat 4 32 0 7 1460 543 278 7 15 chr9 114728923 114729058 -9347114 - RSINE1 SINE B4 -26 139 6 7 1460 1239 22 0 0 chr9 114729142 114729279 -9346893 + B1_Mus1 SINE Alu 2 138 -10 7 1460 217 0 61 0 chr9 114729279 114729312 -9346860 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1460 276 30 0 0 chr9 114729446 114729479 -9346693 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1460 1848 163 63 41 chr9 114729502 114729866 -9346306 + ORR1D1 LTR MaLR 2 373 -1 7 1460 1232 62 0 0 chr9 114729873 114730019 -9346153 + B1_Mus1 SINE Alu 2 147 -1 7 1460 204 67 0 0 chr9 114730026 114730056 -9346116 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 7 1460 1051 41 12 105 chr9 114730394 114730556 -9345616 + B1_Mus2 SINE Alu 1 147 0 7 1460 320 102 33 22 chr9 114730559 114730649 -9345523 + A-rich Low_complexity Low_complexity 5 95 0 7 1460 235 279 123 61 chr9 114731140 114731297 -9344875 + MIRb SINE MIR 4 172 -96 7 1460 756 323 21 24 chr9 114731497 114731786 -9344386 - B4A SINE B4 -4 288 1 7 1460 526 222 215 6 chr9 114731859 114732022 -9344150 - B3A SINE B2 -1 197 1 7 1460 549 293 88 14 chr9 114732591 114732878 -9343294 - MTEa LTR MaLR -40 339 24 7 1460 327 49 0 0 chr9 114733044 114733085 -9343087 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1460 1137 56 14 0 chr9 114733114 114733258 -9342914 + B1_Mus2 SINE Alu 1 146 -1 7 1460 207 0 0 0 chr9 114733260 114733283 -9342889 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 7 1460 585 218 36 87 chr9 114733672 114733868 -9342304 - ORR1E LTR MaLR -170 189 4 7 1460 331 184 96 104 chr9 114734190 114734305 -9341867 - PB1D9 SINE Alu -6 114 1 7 1460 217 135 0 37 chr9 114734626 114734680 -9341492 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1460 1207 55 0 0 chr9 114734740 114734886 -9341286 + B1_Mus1 SINE Alu 1 146 -2 7 1460 231 36 0 0 chr9 114734886 114734914 -9341258 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 8 1460 582 292 30 40 chr9 114735098 114735298 -9340874 - B3A SINE B2 0 198 1 8 1460 226 235 59 0 chr9 114735301 114735369 -9340803 - L1MC4a LINE L1 -20 7862 7791 8 1460 5321 46 35 6 chr9 114735411 114736070 -9340102 - L1_Mus1 LINE L1 -2 6565 5888 8 1460 330 132 0 0 chr9 114736213 114736266 -9339906 + (CTA)n Simple_repeat Simple_repeat 1 53 0 8 1460 537 226 9 0 chr9 114736274 114736380 -9339792 - PB1D10 SINE Alu -6 111 5 8 1460 325 250 149 85 chr9 114736380 114736473 -9339699 - B4 SINE B4 -70 220 9 8 1460 635 201 0 44 chr9 114736665 114736800 -9339372 + B1_Mur2 SINE Alu 3 131 -18 8 1460 315 142 110 33 chr9 114736835 114736917 -9339255 + B1F1 SINE Alu 78 148 -1 8 1460 357 43 0 0 chr9 114737351 114737398 -9338774 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 8 1460 379 284 0 60 chr9 114737403 114737519 -9338653 - ID_B1 SINE B4 -12 212 104 8 1460 293 298 9 46 chr9 114737427 114737536 -9338636 + YREP_Mm Unknown Unknown 206 310 -1502 8 1460 285 197 0 0 chr9 114737554 114737615 -9338557 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1460 756 211 19 85 chr9 114737625 114737837 -9338335 - B3 SINE B2 -18 198 1 8 1460 268 244 122 44 chr9 114738392 114738482 -9337690 + MT2B LTR ERVL 167 263 -338 8 1460 646 198 0 8 chr9 114738406 114738523 -9337649 + B1_Mur4 SINE Alu 35 150 0 8 1460 30 0 0 0 chr9 114739333 114739363 -9336809 + AT_rich Low_complexity Low_complexity 1 30 0 8 1460 191 88 29 0 chr9 114739364 114739398 -9336774 + (TTA)n Simple_repeat Simple_repeat 2 36 0 8 1460 304 272 195 12 chr9 114739836 114740000 -9336172 + B3A SINE B2 1 194 -4 8 1460 225 308 169 57 chr9 114740341 114740445 -9335727 + B1F1 SINE Alu 12 134 -15 8 1460 234 0 0 0 chr9 114740445 114740471 -9335701 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 8 1460 225 308 169 57 chr9 114740471 114740490 -9335682 + B1F1 SINE Alu 135 149 0 8 1460 26 30 0 0 chr9 114740523 114740556 -9335616 + AT_rich Low_complexity Low_complexity 1 33 0 8 1460 226 284 116 16 chr9 114740711 114740840 -9335332 + L1MEe LINE L1 164 305 -4549 8 1460 265 181 157 3 chr9 114741221 114741306 -9334866 + B1F2 SINE Alu 35 135 -13 8 1460 213 175 0 0 chr9 114741318 114741358 -9334814 + GA-rich Low_complexity Low_complexity 3 42 0 8 1460 1500 230 140 0 chr9 114741573 114741930 -9334242 + MTB_Mm LTR MaLR 1 407 0 8 1460 608 13 26 0 chr9 114741962 114742038 -9334134 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 8 1460 1200 111 0 0 chr9 114742476 114742656 -9333516 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1460 547 271 141 34 chr9 114742785 114742991 -9333181 - B4A SINE B4 -59 233 6 8 1460 194 227 0 22 chr9 114743320 114743365 -9332807 + L4 LINE RTE 1983 2026 -3 8 1460 207 0 0 0 chr9 114743715 114743738 -9332434 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 8 1460 501 134 204 22 chr9 114743754 114743864 -9332308 - B1_Mur4 SINE Alu 0 150 22 8 1460 249 33 0 0 chr9 114743897 114743927 -9332245 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1460 1214 74 0 0 chr9 114743937 114744085 -9332087 - B1_Mus1 SINE Alu 0 148 1 8 1460 328 254 79 0 chr9 114744111 114744216 -9331956 + PB1D10 SINE Alu 2 120 0 8 1460 787 191 12 14 chr9 114744223 114744413 -9331759 + B3 SINE B2 1 192 -3 8 1460 712 289 107 31 chr9 114744414 114744899 -9331273 + L1MB8 LINE L1 5332 5853 -325 8 1460 279 79 0 0 chr9 114744900 114744938 -9331234 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1460 1157 253 66 8 chr9 114744945 114745019 -9331153 - B4A SINE B4 0 292 220 8 1460 183 42 0 0 chr9 114745019 114745043 -9331129 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1460 1157 253 66 8 chr9 114745043 114745227 -9330945 - B4A SINE B4 -73 219 20 8 1460 508 300 59 24 chr9 114745280 114745533 -9330639 + L1MB8 LINE L1 5917 6178 -6 8 1460 475 188 52 0 chr9 114745527 114745623 -9330549 + Lx8 LINE L1 6673 6773 -700 8 1460 839 272 92 11 chr9 114745635 114745895 -9330277 + Lx8 LINE L1 6928 7208 -265 8 1460 253 365 0 94 chr9 114745895 114746001 -9330171 + RMER15 LTR ERVL 358 453 -122 8 1460 962 151 0 14 chr9 114746116 114746264 -9329908 - B1_Mus1 SINE Alu -1 147 2 8 1460 721 201 183 38 chr9 114746392 114746578 -9329594 + B3 SINE B2 1 213 -3 8 1460 327 327 23 105 chr9 114746712 114746735 -9329437 + B4 SINE B4 73 174 -118 8 1460 672 254 0 0 chr9 114746735 114746873 -9329299 + B1_Mur2 SINE Alu 11 148 -1 8 1460 615 250 40 23 chr9 114747013 114747189 -9328983 + B3A SINE B2 4 182 -16 8 1460 493 176 0 0 chr9 114747292 114747377 -9328795 + U6 snRNA snRNA 3 87 -20 8 1460 668 244 97 23 chr9 114747358 114747534 -9328638 - MTE2b LTR MaLR -174 205 17 8 1460 797 228 53 0 chr9 114748551 114748722 -9327450 + B3A SINE B2 3 182 -16 8 1460 249 133 0 0 chr9 114748722 114748755 -9327417 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1460 207 0 0 0 chr9 114748755 114748778 -9327394 + (GA)n Simple_repeat Simple_repeat 2 24 0 8 1460 249 133 0 0 chr9 114748778 114748789 -9327383 + (CA)n Simple_repeat Simple_repeat 2 12 0 8 1460 255 272 148 0 chr9 114748985 114749066 -9327106 - B4A SINE B4 -155 137 45 8 1460 2182 108 35 6 chr9 114749229 114749546 -9326626 - ORR1A3 LTR MaLR 0 326 1 8 1460 452 218 117 137 chr9 114749598 114749889 -9326283 + B4A SINE B4 1 291 -1 8 1460 1268 129 0 6 chr9 114749982 114750161 -9326011 + B2_Mm2 SINE B2 4 181 -14 8 1460 22 35 0 0 chr9 114750202 114750231 -9325941 + AT_rich Low_complexity Low_complexity 1 29 0 8 1460 573 210 0 0 chr9 114750362 114750462 -9325710 - ID_B1 SINE B4 -3 221 122 8 1460 978 226 171 15 chr9 114750591 114750717 -9325455 - ORR1D2 LTR MaLR -8 362 211 8 1460 1098 125 79 6 chr9 114750717 114750894 -9325278 - B2_Mm2 SINE B2 -5 190 1 8 1460 978 226 171 15 chr9 114750894 114751036 -9325136 - ORR1D2 LTR MaLR -160 210 53 8 1460 489 302 8 23 chr9 114751049 114751181 -9324991 + RSINE1 SINE B4 3 132 -33 8 1460 190 309 0 35 chr9 114751514 114751571 -9324601 - L2b LINE L2 -2 3373 3319 8 1460 297 268 146 14 chr9 114751918 114752060 -9324112 + MIRb SINE MIR 13 175 -93 8 1460 236 234 76 30 chr9 114752404 114752470 -9323702 + ID4 SINE ID 5 73 -10 8 1460 234 0 0 0 chr9 114752490 114752516 -9323656 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1460 204 40 0 0 chr9 114752865 114752890 -9323282 + (CCCGG)n Simple_repeat Simple_repeat 2 26 0 8 1460 21 0 0 0 chr9 114753338 114753359 -9322813 + GC_rich Low_complexity Low_complexity 1 21 0 8 1460 251 229 74 60 chr9 114754317 114754466 -9321706 + ORR1B1-int LTR MaLR 604 754 -755 8 1460 906 143 0 0 chr9 114754363 114754498 -9321674 + B1_Mus2 SINE Alu 5 139 -8 8 1460 243 0 0 0 chr9 114754498 114754525 -9321647 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1460 739 103 164 0 chr9 114754539 114754655 -9321517 + B1_Mur4 SINE Alu 3 137 -13 8 1460 437 233 139 16 chr9 114754748 114754835 -9321337 + B1F SINE Alu 7 97 -52 8 1460 1377 86 11 0 chr9 114754835 114755022 -9321150 + B2_Mm1a SINE B2 1 189 -4 8 1460 437 233 139 16 chr9 114755022 114755056 -9321116 + B1F SINE Alu 98 143 -6 8 1460 215 161 214 0 chr9 114755057 114755113 -9321059 + B1F SINE Alu 79 146 -3 8 1460 385 186 0 0 chr9 114755114 114755184 -9320988 + B1F SINE Alu 68 137 -12 8 1460 612 0 0 0 chr9 114755283 114755351 -9320821 + (TTTC)n Simple_repeat Simple_repeat 4 71 0 8 1460 708 216 8 0 chr9 114755368 114755493 -9320679 - B3 SINE B2 -90 126 1 8 1460 801 228 15 30 chr9 114755783 114755982 -9320190 + B3A SINE B2 3 198 0 8 1460 242 273 15 0 chr9 114756020 114756086 -9320086 + (TG)n Simple_repeat Simple_repeat 2 68 0 8 1460 733 274 124 23 chr9 114756098 114756363 -9319809 - B4A SINE B4 0 292 1 8 1460 1387 235 64 14 chr9 114756724 114756897 -9319275 - MTEb LTR MaLR -3 376 198 8 1460 351 0 0 0 chr9 114756897 114756936 -9319236 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1460 1387 235 64 14 chr9 114756936 114757120 -9319052 - MTEb LTR MaLR -182 197 1 8 1460 265 279 57 23 chr9 114757199 114757287 -9318885 - MLT1H1 LTR MaLR -462 93 3 8 1460 256 222 15 73 chr9 114757489 114757557 -9318615 + RSINE1 SINE B4 69 132 -33 8 1460 373 284 40 60 chr9 114757599 114757749 -9318423 + B1_Mur1 SINE Alu 1 147 -2 8 1460 635 225 0 32 chr9 114757791 114757915 -9318257 + B3A SINE B2 1 120 -78 8 1460 275 284 123 80 chr9 114757915 114757929 -9318243 + B4A SINE B4 1 144 -148 8 1460 33 56 0 0 chr9 114758072 114758126 -9318046 + AT_rich Low_complexity Low_complexity 1 54 0 8 1460 319 289 132 7 chr9 114758486 114758532 -9317640 + L1MC4 LINE L1 7199 7244 -798 8 1460 318 50 0 0 chr9 114758532 114758572 -9317600 + (TAA)n Simple_repeat Simple_repeat 3 42 0 8 1460 319 288 339 10 chr9 114758572 114758748 -9317424 + L1MC4 LINE L1 7245 7483 -559 8 1460 629 245 38 13 chr9 114758833 114758990 -9317182 + B4 SINE B4 55 215 -77 8 1460 720 212 36 81 chr9 114759026 114759172 -9317000 + B3 SINE B2 1 146 -70 8 1460 1203 55 0 0 chr9 114759172 114759318 -9316854 - B1_Mm SINE Alu -1 146 1 8 1460 720 212 36 81 chr9 114759318 114759392 -9316780 + B3 SINE B2 147 211 -5 8 1460 772 208 44 67 chr9 114759415 114759595 -9316577 - B3 SINE B2 -39 177 2 8 1460 297 0 0 0 chr9 114759688 114759721 -9316451 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1460 1478 281 73 25 chr9 114759722 114760068 -9316104 + L1MA5 LINE L1 5644 6009 -291 8 1460 339 25 0 0 chr9 114760068 114760108 -9316064 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1460 1478 281 73 25 chr9 114760108 114760388 -9315784 + L1MA5 LINE L1 6010 6299 -1 8 1460 242 165 45 34 chr9 114760449 114760537 -9315635 + A-rich Low_complexity Low_complexity 6 94 0 8 1460 533 228 4 3 chr9 114760640 114760743 -9315429 - B1_Mur1 SINE Alu -11 137 34 8 1460 477 223 120 63 chr9 114761261 114761282 -9314890 + ID SINE ID 1 16 -208 9 1460 2988 50 45 5 chr9 114761282 114761663 -9314509 + MTA_Mm LTR MaLR 1 396 0 9 1460 477 223 120 63 chr9 114761663 114761718 -9314454 + ID SINE ID 17 86 -138 9 1460 304 279 62 31 chr9 114761718 114761814 -9314358 + PB1D10 SINE Alu 3 101 -16 9 1460 1073 47 208 0 chr9 114761890 114762039 -9314133 - B2_Mm2 SINE B2 -14 181 2 9 1460 611 259 82 86 chr9 114763270 114763303 -9312869 - B4 SINE B4 0 292 270 9 1460 432 0 0 0 chr9 114763303 114763351 -9312821 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1460 611 259 82 86 chr9 114763351 114763608 -9312564 - B4 SINE B4 -23 269 3 9 1460 457 270 36 0 chr9 114764279 114764390 -9311782 - ID_B1 SINE B4 0 224 110 9 1460 226 217 98 98 chr9 114764313 114764405 -9311767 - PB1D7 SINE Alu -13 107 16 9 1460 338 325 14 1 chr9 114764412 114764543 -9311629 - MIRb SINE MIR -70 198 61 9 1460 561 268 14 7 chr9 114764983 114765122 -9311050 - ID_B1 SINE B4 -36 188 49 9 1460 642 211 0 0 chr9 114765656 114765765 -9310407 + B1_Mur2 SINE Alu 6 114 -35 9 1460 279 0 0 0 chr9 114765765 114765796 -9310376 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1460 222 280 13 0 chr9 114765844 114765919 -9310253 + (TG)n Simple_repeat Simple_repeat 1 76 0 9 1460 681 246 194 13 chr9 114765921 114766157 -9310015 - B4 SINE B4 -2 290 12 9 1460 385 284 0 33 chr9 114766226 114766346 -9309826 - RSINE1 SINE B4 -48 117 2 9 1460 487 283 224 15 chr9 114767752 114767953 -9308219 + B4A SINE B4 50 292 0 9 1460 299 78 30 30 chr9 114767976 114768042 -9308130 + (CCA)n Simple_repeat Simple_repeat 3 68 0 9 1460 732 101 0 0 chr9 114768164 114768293 -9307879 + (TC)n Simple_repeat Simple_repeat 2 130 0 9 1460 836 147 22 0 chr9 114768294 114768430 -9307742 - B1_Mm SINE Alu -3 144 6 9 1460 368 211 64 150 chr9 114768430 114768467 -9307705 - B4A SINE B4 -69 223 66 9 1460 183 326 0 0 chr9 114768482 114768531 -9307641 + L2b LINE L2 3309 3357 -18 9 1460 1337 254 128 39 chr9 114768593 114769076 -9307096 - RMER5 LTR ERV1 -8 526 1 9 1460 1007 221 19 0 chr9 114769156 114769369 -9306803 - ID_B1 SINE B4 -5 219 3 9 1460 218 216 0 0 chr9 114769370 114769407 -9306765 - ID4 SINE ID -30 53 17 9 1460 729 146 0 18 chr9 114769796 114769908 -9306264 + B1_Mur1 SINE Alu 40 149 0 9 1460 582 302 42 9 chr9 114769948 114770165 -9306007 + ID_B1 SINE B4 1 224 0 9 1460 894 339 102 21 chr9 114770391 114770895 -9305277 - MLT1H1 LTR MaLR 0 595 7 9 1460 24 0 0 0 chr9 114770927 114770951 -9305221 + AT_rich Low_complexity Low_complexity 1 24 0 9 1460 257 290 14 0 chr9 114770987 114771056 -9305116 - RSINE1 SINE B4 -9 156 87 9 1460 552 208 22 94 chr9 114771084 114771222 -9304950 - B4A SINE B4 -145 147 20 9 1460 245 300 0 81 chr9 114771950 114772037 -9304135 + MLT1G LTR MaLR 3 82 -509 9 1460 415 123 0 0 chr9 114772422 114772479 -9303693 + (TCTCC)n Simple_repeat Simple_repeat 4 60 0 9 1460 491 187 0 9 chr9 114772479 114772587 -9303585 + CT-rich Low_complexity Low_complexity 1 107 0 9 1460 1209 69 0 0 chr9 114772587 114772747 -9303425 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 9 1460 744 176 16 0 chr9 114772749 114772874 -9303298 - B1_Mur2 SINE Alu -12 137 11 9 1460 230 269 19 0 chr9 114772902 114772954 -9303218 + RMER15 LTR ERVL 1 53 -522 9 1460 1644 224 214 7 chr9 114772955 114773414 -9302758 + RMER15 LTR ERVL 22 575 0 9 1460 252 366 138 20 chr9 114773542 114773737 -9302435 + MLT1G LTR MaLR 282 499 -92 9 1460 447 55 0 0 chr9 114773888 114773943 -9302229 - ORR1A3 LTR MaLR 0 326 272 9 1460 448 75 23 8 chr9 114773941 114774048 -9302124 - B2_Mm2 SINE B2 -1 194 47 9 1460 1132 80 15 116 chr9 114774075 114774119 -9302053 - B2_Mm1t SINE B2 -12 181 147 9 1460 1104 61 0 108 chr9 114774119 114774285 -9301887 + B1_Mus1 SINE Alu 1 148 0 9 1460 1132 80 15 116 chr9 114774285 114774439 -9301733 - B2_Mm1t SINE B2 -47 146 3 9 1460 2179 76 10 10 chr9 114774439 114774725 -9301447 - ORR1A2 LTR MaLR -41 286 1 9 1460 371 318 97 104 chr9 114774840 114774984 -9301188 + RSINE1 SINE B4 23 165 0 9 1460 744 173 0 0 chr9 114774989 114775168 -9301004 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1460 300 135 19 19 chr9 114775193 114775246 -9300926 + HAL1-3A_ME LINE L1 1976 2028 -830 9 1460 878 177 0 14 chr9 114775325 114775468 -9300704 + B1_Mus2 SINE Alu 1 141 -6 9 1460 393 230 80 0 chr9 114775955 114776055 -9300117 + PB1D9 SINE Alu 1 108 -12 9 1460 189 74 0 0 chr9 114776140 114776167 -9300005 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1460 604 223 50 25 chr9 114776176 114776337 -9299835 - RSINE1 SINE B4 0 165 1 9 1460 416 231 130 0 chr9 114776777 114776885 -9299287 - B1F1 SINE Alu -16 133 12 9 1460 304 289 110 84 chr9 114776885 114776932 -9299240 - ID_B1 SINE B4 -16 208 50 9 1460 217 231 59 44 chr9 114777580 114777598 -9298574 + PB1D10 SINE Alu 48 116 -1 9 1460 235 188 20 40 chr9 114777598 114777648 -9298524 + ID_B1 SINE B4 175 223 -1 9 1460 670 250 128 15 chr9 114777714 114777909 -9298263 + ID_B1 SINE B4 7 223 -1 9 1460 361 296 110 25 chr9 114778092 114778210 -9297962 - B1_Mur2 SINE Alu 0 149 22 9 1460 282 219 0 0 chr9 114778246 114778310 -9297862 + CT-rich Low_complexity Low_complexity 3 66 0 9 1460 1181 96 30 0 chr9 114778335 114778502 -9297670 + B2_Mm2 SINE B2 2 173 -22 9 1460 379 87 350 10 chr9 114778535 114778638 -9297534 + B2_Mm2 SINE B2 48 185 -10 9 1460 748 257 18 125 chr9 114778649 114778732 -9297440 - RLTR15 LTR ERVK -9 350 270 9 1460 2628 66 22 0 chr9 114778732 114779052 -9297120 + ORR1A2 LTR MaLR 1 327 0 9 1460 748 257 18 125 chr9 114779052 114779157 -9297015 - RLTR15 LTR ERVK -90 269 171 9 1460 1385 80 43 0 chr9 114779157 114779344 -9296828 - B2_Mm2 SINE B2 0 195 1 9 1460 748 257 18 125 chr9 114779344 114779546 -9296626 - RLTR15 LTR ERVK -189 170 1 9 1460 650 256 51 13 chr9 114779602 114779760 -9296412 - RSINE1 SINE B4 0 165 2 9 1460 227 75 0 70 chr9 114779900 114779943 -9296229 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 9 1460 998 169 0 0 chr9 114779943 114780091 -9296081 - B1_Mur4 SINE Alu -1 149 2 9 1460 1103 262 12 32 chr9 114780289 114780330 -9295842 - B4 SINE B4 -23 269 229 9 1460 597 72 0 0 chr9 114780330 114780413 -9295759 + (TTTC)n Simple_repeat Simple_repeat 3 85 0 9 1460 1144 59 0 0 chr9 114780413 114780549 -9295623 - B1_Mm SINE Alu -11 136 1 9 1460 1103 262 12 32 chr9 114780549 114780758 -9295414 - B4 SINE B4 -64 228 24 9 1460 603 276 98 60 chr9 114781356 114781591 -9294581 + B4A SINE B4 8 251 -41 9 1460 456 245 112 33 chr9 114781761 114781888 -9294284 - ID_B1 SINE B4 0 224 86 9 1460 516 221 68 109 chr9 114781888 114782035 -9294137 + MTE2b LTR MaLR 1 141 -238 9 1460 343 255 112 100 chr9 114782035 114782058 -9294114 + MT2A LTR ERVL 1 172 -361 9 1460 786 270 82 0 chr9 114782365 114782561 -9293611 + ID_B1 SINE B4 12 223 -1 9 1460 204 125 0 0 chr9 114782561 114782593 -9293579 + (GGA)n Simple_repeat Simple_repeat 2 33 0 9 1460 1308 191 108 26 chr9 114782911 114783218 -9292954 + ORR1C2 LTR MaLR 4 335 -49 9 1460 2509 119 59 59 chr9 114783218 114783693 -9292479 + IAPLTR2_Mm LTR ERVK 1 475 0 9 1460 4266 56 89 5 chr9 114783695 114784311 -9291861 + IAPEz-int LTR ERVK 3 662 -5819 9 1460 424 82 0 32 chr9 114784311 114784374 -9291798 + IAPEz-int LTR ERVK 1359 1419 -5062 9 1460 1751 106 0 0 chr9 114784379 114784625 -9291547 + IAPEz-int LTR ERVK 2252 2497 -5183 9 1460 903 80 24 0 chr9 114784620 114784745 -9291427 + IAPEz-int LTR ERVK 4783 4910 -2770 9 1460 25255 19 4 0 chr9 114784745 114787690 -9288482 + IAPEz-int LTR ERVK 3525 6481 0 9 1460 2509 119 59 59 chr9 114787690 114788165 -9288007 + IAPLTR2_Mm LTR ERVK 1 475 0 9 1460 323 182 0 0 chr9 114788165 114788220 -9287952 + ORR1C2 LTR MaLR 330 384 0 9 1460 282 56 0 0 chr9 114788250 114788286 -9287886 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 9 1460 659 225 31 0 chr9 114788286 114788415 -9287757 - B1_Mur1 SINE Alu -13 136 4 9 1460 604 192 54 0 chr9 114788603 114788733 -9287439 + MT2A LTR ERVL 397 533 0 9 1460 811 271 145 0 chr9 114789064 114789319 -9286853 + B4 SINE B4 1 292 0 9 1460 382 239 111 68 chr9 114789945 114790062 -9286110 + RSINE1 SINE B4 6 127 -38 9 1460 459 261 68 17 chr9 114790011 114790089 -9286083 + B3 SINE B2 92 177 -39 9 1460 309 51 0 0 chr9 114790089 114790128 -9286044 + (CATA)n Simple_repeat Simple_repeat 2 40 0 9 1460 459 261 68 17 chr9 114790128 114790166 -9286006 + B3 SINE B2 178 213 -3 9 1460 394 267 12 0 chr9 114790243 114790329 -9285843 - RSINE1 SINE B4 -75 90 4 9 1460 219 125 0 0 chr9 114790348 114790388 -9285784 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 9 1460 413 177 28 43 chr9 114790388 114790504 -9285668 - PB1D10 SINE Alu 0 120 1 9 1460 321 118 0 0 chr9 114790530 114790581 -9285591 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1460 496 246 73 0 chr9 114790589 114790699 -9285473 + B4 SINE B4 175 292 0 9 1460 337 290 252 0 chr9 114790734 114790865 -9285307 - B4A SINE B4 -48 244 81 9 1460 216 0 0 0 chr9 114790909 114790933 -9285239 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1460 201 196 0 0 chr9 114790983 114791029 -9285143 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1460 207 0 0 0 chr9 114791480 114791503 -9284669 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9 1460 451 209 23 0 chr9 114791514 114791600 -9284572 + ID SINE ID 2 89 -135 9 1460 189 171 0 0 chr9 114791607 114791642 -9284530 + (ATAGG)n Simple_repeat Simple_repeat 1 35 0 9 1460 239 54 27 0 chr9 114791867 114791904 -9284268 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 9 1460 784 158 24 0 chr9 114791912 114792039 -9284133 - B1_Mur4 SINE Alu -13 137 8 9 1460 3558 45 28 14 chr9 114792171 114792600 -9283572 - RLTR10C LTR ERVK -1 435 1 9 1460 296 77 0 0 chr9 114792951 114792990 -9283182 - ORR1C1 LTR MaLR 0 384 346 9 1460 439 186 10 10 chr9 114792997 114793100 -9283072 + (TA)n Simple_repeat Simple_repeat 2 104 0 9 1460 1276 181 77 74 chr9 114793101 114793412 -9282760 - ORR1C1 LTR MaLR -66 312 1 9 1460 602 147 137 15 chr9 114794062 114794193 -9281979 + B1_Mur1 SINE Alu 3 149 0 9 1460 612 264 73 82 chr9 114794210 114794429 -9281743 + B4A SINE B4 68 284 -8 9 1460 453 154 42 34 chr9 114794499 114794981 -9281191 + (TG)n Simple_repeat Simple_repeat 1 485 0 1 1460 229 346 36 71 chr9 114795349 114795489 -9280683 + MER5A DNA MER1_type 53 187 -2 1 1460 359 241 26 69 chr9 114795785 114795901 -9280271 - ID_B1 SINE B4 0 224 114 1 1460 543 196 22 0 chr9 114795898 114795990 -9280182 - B1_Mur3 SINE Alu -54 95 2 1 1460 910 227 40 0 chr9 114796057 114796255 -9279917 + B3 SINE B2 1 206 -10 1 1460 942 154 21 0 chr9 114796290 114796433 -9279739 + B1_Mur3 SINE Alu 1 146 -3 1 1460 965 236 52 8 chr9 114796443 114796695 -9279477 - Lx8 LINE L1 -830 6643 6381 1 1460 543 228 102 0 chr9 114796695 114796822 -9279350 + B1F1 SINE Alu 3 142 -7 1 1460 187 104 42 0 chr9 114796829 114796877 -9279295 + (CAAAC)n Simple_repeat Simple_repeat 4 53 0 1 1460 1011 195 55 25 chr9 114796908 114797108 -9279064 + B3 SINE B2 1 206 -10 1 1460 245 256 0 133 chr9 114797186 114797276 -9278896 + MLT1J LTR MaLR 383 460 -52 1 1460 1270 93 44 0 chr9 114797597 114797779 -9278393 + B2_Mm1a SINE B2 1 190 -3 1 1460 877 120 90 0 chr9 114797781 114797914 -9278258 + B1_Mur4 SINE Alu 1 145 -5 1 1460 21 0 0 0 chr9 114797922 114797943 -9278229 + AT_rich Low_complexity Low_complexity 1 21 0 1 1460 665 120 190 51 chr9 114798085 114798243 -9277929 + B2_Mm2 SINE B2 5 184 -11 1 1460 791 242 45 5 chr9 114798256 114798455 -9277717 + B3 SINE B2 10 216 0 1 1460 655 211 8 0 chr9 114798477 114798600 -9277572 + B1_Mur4 SINE Alu 24 147 -3 1 1460 412 178 68 0 chr9 114798618 114798691 -9277481 + B2_Mm2 SINE B2 3 80 -115 1 1460 231 199 184 41 chr9 114798759 114798796 -9277376 + PB1D10 SINE Alu 23 137 -12 1 1460 289 246 0 0 chr9 114798796 114798853 -9277319 + ID_B1 SINE B4 156 212 -12 1 1460 1082 88 0 0 chr9 114798903 114799051 -9277121 - B1_Mus1 SINE Alu 0 148 1 1 1460 450 0 0 0 chr9 114799184 114799234 -9276938 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1460 525 222 85 23 chr9 114799768 114799897 -9276275 - ID_B1 SINE B4 -86 138 2 1 1460 664 230 114 5 chr9 114799928 114800126 -9276046 + B4A SINE B4 1 221 -71 1 1460 384 288 52 29 chr9 114800126 114800262 -9275910 + RSINE1 SINE B4 2 140 -25 1 1460 267 31 0 0 chr9 114800263 114800295 -9275877 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1 1460 260 243 27 0 chr9 114800298 114800372 -9275800 + B4A SINE B4 217 292 0 1 1460 626 207 104 65 chr9 114800869 114801070 -9275102 - B3 SINE B2 0 216 8 1 1460 360 43 0 0 chr9 114801074 114801120 -9275052 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1460 629 200 108 0 chr9 114801138 114801268 -9274904 - B1_Mur1 SINE Alu -4 145 2 1 1460 929 131 131 0 chr9 114801503 114801663 -9274509 + URR1B DNA MER1_type 2 182 -43 1 1460 1084 189 43 10 chr9 114801989 114802197 -9273975 + B3 SINE B2 1 215 -1 1 1460 247 232 96 55 chr9 114803556 114803629 -9272543 - B1F SINE Alu 0 149 74 1 1460 217 162 0 0 chr9 114803653 114803690 -9272482 - RSINE1 SINE B4 -36 129 93 1 1460 403 245 176 0 chr9 114803741 114803843 -9272329 - ID_B1 SINE B4 -67 157 38 1 1460 502 273 0 1 chr9 114803855 114803972 -9272200 - PB1D7 SINE Alu -2 118 4 1 1460 905 164 14 14 chr9 114804044 114804192 -9271980 - B1_Mur4 SINE Alu -1 149 2 1 1460 1350 200 146 90 chr9 114804193 114804550 -9271622 + MTE2a LTR MaLR 3 379 0 1 1460 267 243 39 39 chr9 114804854 114804931 -9271241 + PB1D10 SINE Alu 6 82 -35 1 1460 216 0 0 0 chr9 114805542 114805566 -9270606 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1460 280 266 0 71 chr9 114805681 114805766 -9270406 + ID4 SINE ID 2 80 -3 1 1460 1127 35 7 46 chr9 114805807 114805951 -9270221 + B1_Mm SINE Alu 2 139 -8 1 1460 207 0 0 0 chr9 114805951 114805974 -9270198 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1460 570 259 36 24 chr9 114806048 114806125 -9270047 + ID SINE ID 3 81 -143 1 1460 269 265 80 14 chr9 114806125 114806263 -9269909 + B1F SINE Alu 1 147 -2 1 1460 227 324 14 14 chr9 114806294 114806366 -9269806 - MLT1H LTR MaLR -383 166 95 1 1460 879 246 176 7 chr9 114806629 114806919 -9269253 - MTEb LTR MaLR -7 372 34 1 1460 1382 149 120 92 chr9 114806969 114806987 -9269185 - RMER17C LTR ERVK -8 402 386 1 1460 1075 50 57 0 chr9 114806987 114807127 -9269045 + B1_Mus1 SINE Alu 1 148 0 1 1460 1382 149 120 92 chr9 114807127 114807499 -9268673 - RMER17C LTR ERVK -25 385 1 1 1460 536 248 34 8 chr9 114807904 114808022 -9268150 + RSINE1 SINE B4 1 121 -44 1 1460 232 301 27 72 chr9 114808050 114808110 -9268062 + ID_B1 SINE B4 82 136 -88 1 1460 292 321 73 37 chr9 114808110 114808246 -9267926 + B1_Mur3 SINE Alu 3 143 -6 1 1460 955 162 131 66 chr9 114808249 114808447 -9267725 + B3 SINE B2 1 211 -5 1 1460 26 50 0 0 chr9 114808455 114808495 -9267677 + AT_rich Low_complexity Low_complexity 1 40 0 1 1460 280 258 118 59 chr9 114808510 114808646 -9267526 - RLTR12B LTR ERVK -18 510 367 1 1460 247 314 23 69 chr9 114808689 114808819 -9267353 - RLTR20C LTR ERVK -335 199 76 1 1460 301 229 34 36 chr9 114810003 114810106 -9266066 + PB1D10 SINE Alu 27 134 -15 1 1460 205 288 15 15 chr9 114810394 114810461 -9265711 - MER5A DNA MER1_type 0 189 123 1 1460 249 98 0 0 chr9 114811287 114811328 -9264844 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1460 348 43 0 0 chr9 114811668 114811714 -9264458 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1460 647 204 586 10 chr9 114811714 114811895 -9264277 + RLTR14 LTR ERV1 1 285 -97 1 1460 610 269 0 0 chr9 114812023 114812157 -9264015 - B1F SINE Alu -15 134 1 1 1460 759 226 0 14 chr9 114812191 114812339 -9263833 + B1_Mur1 SINE Alu 3 148 -1 1 1460 519 231 44 95 chr9 114812393 114812551 -9263621 - RMER30 DNA MER1_type -48 154 5 1 1460 314 279 62 47 chr9 114812984 114813112 -9263060 + Lx9 LINE L1 5780 5909 -1735 1 1460 225 211 0 0 chr9 114813112 114813169 -9263003 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1460 614 288 112 88 chr9 114813170 114813445 -9262727 - B4A SINE B4 0 292 36 1 1460 219 69 0 0 chr9 114814310 114814339 -9261833 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 1 1460 571 272 44 0 chr9 114814359 114814495 -9261677 + B1_Mur1 SINE Alu 2 143 -6 1 1460 1379 175 132 37 chr9 114815215 114815542 -9260630 - RLTR11A2 LTR ERVK -3 524 167 1 1460 326 182 15 0 chr9 114816903 114816969 -9259203 - ID_B1 SINE B4 -34 190 124 1 1460 687 167 120 8 chr9 114817033 114817166 -9259006 + B1_Mur3 SINE Alu 1 148 -1 1 1460 228 35 0 0 chr9 114817643 114817672 -9258500 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 1 1460 825 71 159 0 chr9 114817712 114817838 -9258334 + B1_Mm SINE Alu 2 147 0 1 1460 261 0 0 0 chr9 114817838 114817867 -9258305 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1460 203 0 37 0 chr9 114817925 114817952 -9258220 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 1 1460 854 212 43 14 chr9 114818403 114818613 -9257559 + B3 SINE B2 1 216 0 1 1460 877 244 25 15 chr9 114818620 114818816 -9257356 + B3A SINE B2 1 198 0 1 1460 298 98 58 19 chr9 114818867 114818919 -9257253 + B3A SINE B2 26 79 -119 1 182 1003 199 117 30 chr9 114818923 114819351 -9256821 - RLTR20C LTR ERVK 0 578 2 1 1461 493 279 49 14 chr9 114819351 114819479 -9256693 + B3 SINE B2 74 206 -10 1 1461 401 221 127 25 chr9 114819709 114819862 -9256310 + B4 SINE B4 124 291 -1 1 1461 1152 63 31 0 chr9 114820182 114820341 -9255831 - B2_Mm1t SINE B2 0 193 30 1 1461 234 0 0 0 chr9 114820342 114820368 -9255804 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1461 1220 230 175 3 chr9 114820387 114820775 -9255397 - RMER5 LTR ERV1 0 534 80 1 1461 643 203 17 0 chr9 114821220 114821338 -9254834 + PB1D9 SINE Alu 1 120 0 1 1461 1016 103 14 20 chr9 114821474 114821622 -9254550 + B1_Mus1 SINE Alu 2 148 0 1 1461 194 91 0 29 chr9 114821622 114821656 -9254516 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1461 421 259 63 0 chr9 114821919 114822062 -9254110 + MER5B DNA MER1_type 17 168 -10 1 1461 352 289 154 7 chr9 114822657 114822793 -9253379 + B3A SINE B2 1 156 -42 1 1461 243 268 0 51 chr9 114822842 114822901 -9253271 - B4A SINE B4 -21 271 216 1 1461 687 263 126 5 chr9 114822884 114823075 -9253097 - B3 SINE B2 -2 214 1 1 1461 845 236 89 0 chr9 114823083 114823286 -9252886 - B4A SINE B4 -71 221 1 1 1461 501 271 44 15 chr9 114823657 114823792 -9252380 + B1F SINE Alu 1 139 -10 1 1461 1899 184 83 8 chr9 114823853 114824225 -9251947 + RLTR18B LTR ERVK 8 407 -105 1 1461 266 257 26 26 chr9 114824647 114824723 -9251449 - B3 SINE B2 -5 211 136 1 1461 422 252 0 20 chr9 114824717 114824818 -9251354 + B1F SINE Alu 41 139 -10 1 1461 579 229 124 7 chr9 114824859 114825004 -9251168 - B3A SINE B2 -35 163 2 1 1461 1208 48 0 7 chr9 114825397 114825543 -9250629 + B1_Mus2 SINE Alu 3 147 0 1 1461 318 312 12 0 chr9 114825623 114825703 -9250469 + MTEa LTR MaLR 91 171 -208 1 1461 450 281 56 30 chr9 114825815 114826013 -9250159 + MTEa LTR MaLR 177 379 0 1 1461 342 0 0 0 chr9 114826418 114826456 -9249716 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1461 403 273 116 0 chr9 114826462 114826583 -9249589 - RSINE1 SINE B4 -29 136 2 1 1461 518 144 28 46 chr9 114826588 114826697 -9249475 - B1F SINE Alu -3 146 40 1 1461 462 226 24 0 chr9 114826726 114826810 -9249362 + ID_B1 SINE B4 130 215 -9 1 1461 341 242 80 50 chr9 114826810 114826824 -9249348 + B1F SINE Alu 49 149 0 1 1461 394 272 144 0 chr9 114827295 114827475 -9248697 + ID_B1 SINE B4 1 206 -18 1 1461 920 233 9 65 chr9 114827481 114827697 -9248475 + B3 SINE B2 4 207 -9 1 1461 21 36 0 0 chr9 114827737 114827765 -9248407 + AT_rich Low_complexity Low_complexity 1 28 0 1 1461 374 275 128 0 chr9 114828165 114828274 -9247898 + PB1 SINE Alu 3 125 -2 1 1461 1127 45 8 0 chr9 114828337 114828470 -9247702 + B1_Mus2 SINE Alu 2 135 -12 1 1461 180 0 0 0 chr9 114828470 114828490 -9247682 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1461 3175 43 13 15 chr9 114828714 114829111 -9247061 + MTA_Mm LTR MaLR 1 396 0 1 1461 450 218 162 9 chr9 114829255 114829366 -9246806 + B3A SINE B2 2 129 -69 1 1461 408 111 0 0 chr9 114829377 114829440 -9246732 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1461 301 289 51 98 chr9 114830013 114830247 -9245925 + ID_B1 SINE B4 1 223 -1 1 1461 339 65 0 0 chr9 114830301 114830347 -9245825 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1461 399 235 40 80 chr9 114830616 114830741 -9245431 + ID_B1 SINE B4 105 224 0 1 1461 366 289 115 0 chr9 114830745 114830849 -9245323 + PB1D9 SINE Alu 1 116 -4 1 1461 1008 195 38 19 chr9 114830893 114831102 -9245070 + B3 SINE B2 1 213 -3 1 1461 387 113 0 0 chr9 114831390 114831452 -9244720 + (TCTG)n Simple_repeat Simple_repeat 4 65 0 1 1461 385 304 39 65 chr9 114831851 114832006 -9244166 + RSINE1 SINE B4 11 161 -4 1 1461 251 286 78 88 chr9 114832006 114832036 -9244136 + B2_Mm2 SINE B2 34 192 -3 1 1461 645 241 72 30 chr9 114832124 114832243 -9243929 + ID_B1 SINE B4 33 158 -66 1 1461 973 123 142 0 chr9 114832243 114832406 -9243766 + B2_Mm1t SINE B2 2 205 -11 1 1461 332 142 0 39 chr9 114832436 114832503 -9243669 + B2_Mm2 SINE B2 47 109 -107 1 1461 273 206 111 0 chr9 114832972 114833035 -9243137 + RSINE1 SINE B4 49 118 -47 1 1461 550 210 206 18 chr9 114833071 114833236 -9242936 + B3 SINE B2 20 215 -1 1 1461 413 252 18 18 chr9 114833257 114833370 -9242802 - B4 SINE B4 -179 113 1 1 1461 228 243 68 0 chr9 114833904 114833978 -9242194 + ID4_ SINE ID 3 81 -2 1 1461 401 277 45 25 chr9 114834323 114834523 -9241649 + B4A SINE B4 8 211 -81 1 1461 243 289 26 0 chr9 114834561 114834650 -9241522 + (CACG)n Simple_repeat Simple_repeat 1 91 0 1 1461 230 286 205 25 chr9 114835052 114835174 -9240998 + ID_B1 SINE B4 2 145 -79 1 1461 944 201 5 10 chr9 114835264 114835351 -9240821 + B4 SINE B4 2 87 -205 1 1461 325 246 40 68 chr9 114835351 114835499 -9240673 + B1_Mus2 SINE Alu 4 147 0 1 1461 555 264 51 6 chr9 114835514 114835670 -9240502 + RSINE1 SINE B4 2 164 -1 1 1461 685 126 125 59 chr9 114836079 114836231 -9239941 + B2_Mm2 SINE B2 1 162 -33 1 1461 1044 98 7 0 chr9 114836653 114836796 -9239376 + B1_Mus2 SINE Alu 1 144 -3 1 1461 447 216 31 0 chr9 114836865 114836962 -9239210 - PB1D9 SINE Alu -8 112 13 1 1461 234 232 19 120 chr9 114836879 114836987 -9239185 - MT2B LTR ERVL -350 251 155 1 1461 311 260 19 86 chr9 114836983 114837086 -9239086 - B1F SINE Alu 0 149 54 1 1461 1912 118 64 0 chr9 114837086 114837432 -9238740 - RMER6A LTR ERVK 0 756 389 1 1461 789 67 0 0 chr9 114837438 114837542 -9238630 + (TTC)n Simple_repeat Simple_repeat 1 104 0 1 1461 1554 189 40 24 chr9 114837683 114838062 -9238110 - RMER6A LTR ERVK -325 431 47 1 1461 509 210 56 56 chr9 114838137 114838263 -9237909 - ID_B1 SINE B4 -11 213 88 1 1461 249 33 0 0 chr9 114838263 114838293 -9237879 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1461 290 225 19 44 chr9 114838721 114838821 -9237351 + PB1D10 SINE Alu 48 139 -8 1 1461 345 209 0 0 chr9 114838821 114838888 -9237284 + ID_B1 SINE B4 89 155 -69 1 1461 1047 70 14 7 chr9 114838891 114839036 -9237136 + B1_Mus1 SINE Alu 2 147 -1 1 1461 1117 185 15 5 chr9 114839046 114839252 -9236920 + B3 SINE B2 1 208 -8 1 1461 532 277 36 0 chr9 114839637 114839774 -9236398 - B1F1 SINE Alu -3 146 5 1 1461 374 257 71 0 chr9 114840174 114840287 -9235885 + ID_B1 SINE B4 102 222 -2 1 1461 237 230 230 0 chr9 114840496 114840570 -9235602 + RSINE1 SINE B4 44 134 -31 1 1461 649 120 16 16 chr9 114840622 114840746 -9235426 + B1_Mur2 SINE Alu 5 117 0 1 1461 873 164 72 34 chr9 114840748 114840956 -9235216 + B3 SINE B2 1 216 0 1 1461 1391 67 0 25 chr9 114840963 114841161 -9235011 + B2_Mm2 SINE B2 1 193 -2 1 1461 1083 69 21 0 chr9 114841277 114841422 -9234750 + B1_Mus1 SINE Alu 1 148 0 1 1461 212 221 143 0 chr9 114841676 114841753 -9234419 + B1_Mur2 SINE Alu 62 149 0 1 1461 394 272 167 0 chr9 114843548 114843710 -9232462 + ID_B1 SINE B4 3 191 -33 1 1461 306 267 26 71 chr9 114843610 114843723 -9232449 + PB1D10 SINE Alu 7 114 -3 1 1461 609 271 19 10 chr9 114843886 114844049 -9232123 + ID_B1 SINE B4 74 235 -57 1 1461 684 157 16 8 chr9 114844167 114844289 -9231883 - B1_Mur1 SINE Alu -6 143 21 1 1461 26 0 0 0 chr9 114844330 114844356 -9231816 + AT_rich Low_complexity Low_complexity 1 26 0 1 1461 586 223 25 0 chr9 114844363 114844484 -9231688 + B1_Mur1 SINE Alu 24 147 -2 1 1461 294 29 0 0 chr9 114845135 114845170 -9231002 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1461 207 146 0 0 chr9 114845205 114845246 -9230926 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1461 1196 41 0 0 chr9 114845246 114845392 -9230780 - B1_Mus2 SINE Alu 0 147 2 1 1461 361 278 83 0 chr9 114845405 114845538 -9230634 - B1F2 SINE Alu -5 144 1 1 1461 897 276 37 57 chr9 114845616 114845912 -9230260 - B4A SINE B4 0 292 3 1 1461 621 226 109 10 chr9 114845930 114846122 -9230050 - B3 SINE B2 -5 211 1 1 1461 384 119 0 0 chr9 114846130 114846189 -9229983 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 1 1461 275 309 11 11 chr9 114846634 114846729 -9229443 + B4A SINE B4 1 95 -197 1 1461 606 152 93 0 chr9 114846780 114846898 -9229274 + RSINE1 SINE B4 2 130 -35 1 1461 633 140 0 0 chr9 114847073 114847180 -9228992 + B2_Mm2 SINE B2 1 107 -88 1 1461 552 173 8 91 chr9 114847278 114847399 -9228773 + B1_Mur1 SINE Alu 38 148 -1 1 1461 276 100 0 0 chr9 114847462 114847502 -9228670 + (TATG)n Simple_repeat Simple_repeat 4 43 0 1 1461 280 242 0 0 chr9 114847506 114847568 -9228604 - ID_B1 SINE B4 -16 208 147 1 1461 846 56 0 0 chr9 114847576 114847684 -9228488 + (TTCTCC)n Simple_repeat Simple_repeat 5 112 0 1 1461 942 33 0 8 chr9 114847685 114847808 -9228364 - B1_Mus2 SINE Alu -6 141 20 1 1461 521 193 7 85 chr9 114847808 114847838 -9228334 - ID_B1 SINE B4 -6 218 78 1 1461 556 180 8 62 chr9 114847900 114848030 -9228142 + B3 SINE B2 8 130 -86 1 1461 399 297 0 10 chr9 114848125 114848227 -9227945 - PB1D10 SINE Alu -16 101 1 1 1461 407 272 0 0 chr9 114848261 114848353 -9227819 + PB1D10 SINE Alu 1 92 -25 1 1461 259 226 0 0 chr9 114848370 114848423 -9227749 + (CAGGG)n Simple_repeat Simple_repeat 3 55 0 1 1461 3250 28 5 2 chr9 114848504 114848899 -9227273 - MTA_Mm LTR MaLR 0 396 1 1 1461 547 163 83 69 chr9 114848910 114848995 -9227177 + B1_Mm SINE Alu 1 87 -60 1 1461 445 181 43 0 chr9 114848995 114849111 -9227061 + L1Md_F2 LINE L1 6462 6582 0 1 1461 547 163 83 69 chr9 114849111 114849170 -9227002 + B1_Mm SINE Alu 88 147 0 1 1461 1096 65 0 0 chr9 114849207 114849345 -9226827 + B1_Mus1 SINE Alu 1 138 -10 1 1461 285 29 0 0 chr9 114849345 114849379 -9226793 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1461 477 34 0 0 chr9 114849415 114849474 -9226698 + (TCCC)n Simple_repeat Simple_repeat 3 61 0 1 1461 298 138 0 0 chr9 114849474 114849532 -9226640 - PB1D9 SINE Alu -21 99 42 1 1461 316 246 68 40 chr9 114850000 114850148 -9226024 + RMER15 LTR ERVL 423 574 -1 1 1461 745 225 0 0 chr9 114850150 114850292 -9225880 - RSINE1 SINE B4 -21 144 3 1 1461 258 220 160 57 chr9 114850491 114850597 -9225575 + PB1D10 SINE Alu 1 117 0 1 1461 3690 86 61 7 chr9 114850614 114851152 -9225020 + RMER2 LTR ERV1 1 567 0 1 1461 4339 48 12 10 chr9 114851293 114851845 -9224327 - LTRIS_Mus LTR ERV1 0 587 34 1 1461 2938 73 166 2 chr9 114851845 114852285 -9223887 + RLTR1B LTR ERV1 1 512 0 1 1461 4339 48 12 10 chr9 114852285 114852318 -9223854 - LTRIS_Mus LTR ERV1 -554 33 1 1 1461 1116 81 0 0 chr9 114852562 114852710 -9223462 + B1_Mus1 SINE Alu 1 148 0 1 1461 509 147 48 29 chr9 114852798 114852903 -9223269 - ID_B1 SINE B4 -19 205 99 1 1461 548 218 6 133 chr9 114853214 114853394 -9222778 + RSINE1 SINE B4 2 158 -7 1 1461 233 52 32 65 chr9 114853500 114853562 -9222610 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 1 1461 964 256 64 69 chr9 114853738 114854044 -9222128 + ORR1E LTR MaLR 1 298 -61 1 1461 2820 66 15 34 chr9 114854044 114854451 -9221721 + MTB LTR MaLR 2 400 0 1 1461 964 256 64 69 chr9 114854451 114854505 -9221667 + ORR1E LTR MaLR 299 359 0 1 1461 1870 165 80 9 chr9 114854618 114854967 -9221205 - RLTR14 LTR ERV1 0 382 9 1 1461 1315 64 10 36 chr9 114854967 114855162 -9221010 - B2_Mm2 SINE B2 -4 191 2 1 1461 238 289 10 82 chr9 114855273 114855353 -9220819 - B3A SINE B2 -1 197 124 1 1461 2467 164 17 0 chr9 114855353 114855767 -9220405 - MTC LTR MaLR 0 421 1 1 1461 238 289 10 82 chr9 114855767 114855784 -9220388 - B3A SINE B2 -75 123 107 1 1461 560 290 24 6 chr9 114855779 114855949 -9220223 - B4A SINE B4 -117 175 3 1 1461 727 278 98 0 chr9 114855950 114856144 -9220028 - ID_B1 SINE B4 0 224 12 1 1461 528 16 0 0 chr9 114856342 114856403 -9219769 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1461 225 0 0 0 chr9 114856403 114856427 -9219745 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1461 249 250 0 16 chr9 114856485 114856502 -9219670 + B4 SINE B4 70 85 -207 1 1461 253 218 8 0 chr9 114856502 114856560 -9219612 + B1_Mus2 SINE Alu 1 60 -60 1 1461 216 228 0 0 chr9 114856795 114856852 -9219320 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1461 446 231 0 46 chr9 114856876 114856985 -9219187 + PB1D10 SINE Alu 1 104 -13 1 1461 343 221 0 0 chr9 114857105 114857173 -9218999 + B3A SINE B2 5 72 -126 1 1461 267 137 19 19 chr9 114857149 114857201 -9218971 + PB1D10 SINE Alu 55 106 -11 1 1461 407 274 16 31 chr9 114857310 114857438 -9218734 + RSINE1 SINE B4 4 129 -36 1 1461 527 285 7 0 chr9 114858166 114858303 -9217869 + ID_B1 SINE B4 87 224 0 1 1461 689 165 0 0 chr9 114858483 114858598 -9217574 - B1_Mur1 SINE Alu -16 133 19 1 1461 359 0 0 89 chr9 114858656 114858712 -9217460 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 1 1461 1254 42 6 6 chr9 114858712 114858870 -9217302 - B2_Mm1a SINE B2 -33 160 2 1 1461 201 250 0 18 chr9 114859131 114859188 -9216984 + C-rich Low_complexity Low_complexity 3 58 0 1 1461 265 156 188 0 chr9 114859346 114859410 -9216762 + PB1D10 SINE Alu 11 86 -31 1 1461 199 206 0 42 chr9 114859454 114859525 -9216647 + GA-rich Low_complexity Low_complexity 3 70 0 1 1461 272 232 101 34 chr9 114860188 114860277 -9215895 - PB1D10 SINE Alu 0 117 23 1 1461 484 196 107 0 chr9 114860321 114860433 -9215739 - ID_B1 SINE B4 0 224 101 1 1461 471 272 0 0 chr9 114860471 114860585 -9215587 - PB1D7 SINE Alu 0 120 7 1 1461 276 219 5 117 chr9 114860813 114860928 -9215244 - B1F2 SINE Alu -11 116 13 1 1461 222 319 185 0 chr9 114860883 114861002 -9215170 - B4A SINE B4 -149 143 3 1 1461 265 287 106 0 chr9 114861031 114861125 -9215047 + BC1_Mm scRNA scRNA 5 108 -44 1 1461 528 181 0 213 chr9 114861192 114861264 -9214908 - B1F SINE Alu -2 147 78 1 1461 1808 110 185 21 chr9 114861264 114861589 -9214583 + ORR1C1 LTR MaLR 1 378 0 1 1461 528 181 0 213 chr9 114861589 114861699 -9214473 - B1F SINE Alu -72 77 4 1 1461 924 161 0 0 chr9 114861735 114861878 -9214294 - B1_Mur4 SINE Alu -5 145 3 1 1461 475 252 145 14 chr9 114861953 114862098 -9214074 - RSINE1 SINE B4 0 165 2 1 1461 585 258 81 16 chr9 114862118 114862303 -9213869 - B3 SINE B2 -14 202 6 1 1461 324 132 349 0 chr9 114862347 114862430 -9213742 - PB1D10 SINE Alu -5 112 1 1 1461 352 261 128 4 chr9 114862771 114862875 -9213297 + B1F SINE Alu 17 128 -19 1 1461 777 141 29 29 chr9 114862932 114863071 -9213101 + B1_Mur1 SINE Alu 11 149 0 1 1461 504 266 41 14 chr9 114864050 114864195 -9211977 + RSINE1 SINE B4 2 150 -15 1 1461 219 302 116 0 chr9 114865737 114865823 -9210349 - PB1D10 SINE Alu -12 105 10 1 1461 274 23 23 23 chr9 114866404 114866448 -9209724 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1461 999 38 0 0 chr9 114866451 114866582 -9209590 - B1_Mm SINE Alu -6 141 11 1 1461 327 64 219 49 chr9 114866920 114867002 -9209170 - B2_Mm2 SINE B2 0 195 100 1 1461 706 272 11 43 chr9 114867122 114867310 -9208862 + B3A SINE B2 1 182 -16 1 1461 521 208 6 0 chr9 114867359 114867537 -9208635 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1461 341 271 65 24 chr9 114867671 114867841 -9208331 + L1M5 LINE L1 4132 4308 -1838 1 1461 594 118 0 0 chr9 114867989 114868082 -9208090 + (TTCC)n Simple_repeat Simple_repeat 3 95 0 1 1461 970 229 127 52 chr9 114868109 114868417 -9207755 - MTD LTR MaLR -15 404 74 1 1461 651 232 18 55 chr9 114868418 114868582 -9207590 - ID_B1 SINE B4 -66 158 1 1 1461 399 260 47 28 chr9 114868587 114868694 -9207478 - PB1D10 SINE Alu -8 109 1 1 1461 693 214 12 25 chr9 114869021 114869184 -9206988 - B3A SINE B2 -4 194 34 1 1461 877 90 15 22 chr9 114869194 114869331 -9206841 + B1_Mus1 SINE Alu 11 146 -2 1 1461 324 158 0 0 chr9 114869828 114869885 -9206287 + CT-rich Low_complexity Low_complexity 2 58 0 1 1461 295 314 0 0 chr9 114869892 114869978 -9206194 - PB1D7 SINE Alu -2 118 33 1 1461 233 232 18 0 chr9 114870029 114870085 -9206087 - ID_B1 SINE B4 -16 208 152 1 1461 213 260 91 0 chr9 114870085 114870106 -9206066 - PB1D7 SINE Alu -16 104 21 1 1461 3444 131 90 12 chr9 114871220 114871822 -9204350 + RMER19A LTR ERVK 87 735 -2 1 1461 303 253 53 42 chr9 114871825 114871920 -9204252 - RSINE1 SINE B4 -69 96 1 1 1461 591 285 47 0 chr9 114872090 114872304 -9203868 - ID_B1 SINE B4 0 224 1 1 1461 498 17 0 0 chr9 114872488 114872547 -9203625 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1461 964 223 10 30 chr9 114872852 114873055 -9203117 - B3 SINE B2 -7 209 11 1 1461 520 152 0 26 chr9 114873855 114873970 -9202202 + CT-rich Low_complexity Low_complexity 2 113 0 1 1461 197 65 0 31 chr9 114873968 114874000 -9202172 + (CAT)n Simple_repeat Simple_repeat 3 33 0 1 1461 227 313 86 57 chr9 114874014 114874119 -9202053 - RSINE1 SINE B4 -41 124 17 1 1461 296 248 16 7 chr9 114874134 114874157 -9202015 - B1_Mur4 SINE Alu -15 102 8 1 1461 232 351 14 0 chr9 114874157 114874231 -9201941 - B4 SINE B4 -125 167 93 1 1461 365 176 110 0 chr9 114874263 114874354 -9201818 - B3A SINE B2 0 198 98 1 1461 522 298 14 0 chr9 114874353 114874494 -9201678 - B3 SINE B2 -47 169 27 1 1461 1044 62 0 52 chr9 114874504 114874658 -9201514 - B1_Mus2 SINE Alu 0 147 2 1 1461 1076 78 0 13 chr9 114874660 114874816 -9201356 - B2_Mm2 SINE B2 -41 154 1 1 1461 1325 57 17 6 chr9 114874823 114875000 -9201172 - B2_Mm2 SINE B2 -12 183 5 1 1461 230 262 16 0 chr9 114875022 114875083 -9201089 + MTD LTR MaLR 81 142 -277 1 1461 560 228 29 7 chr9 114875153 114875290 -9200882 + MTD LTR MaLR 280 419 0 1 1461 185 262 28 7 chr9 114875306 114875448 -9200724 + (TCCA)n Simple_repeat Simple_repeat 2 146 0 1 1461 244 320 119 10 chr9 114875564 114875665 -9200507 + RMER1B Other Other 1 112 -954 1 1461 1240 231 159 19 chr9 114875943 114876158 -9200014 + RMER1C Other Other 125 542 -800 1 1461 252 0 0 0 chr9 114876158 114876186 -9199986 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1461 2951 200 23 186 chr9 114876186 114877368 -9198804 + RMER1B Other Other 164 1066 0 1 1461 805 188 0 20 chr9 114877375 114877527 -9198645 + B1_Mur4 SINE Alu 1 149 -1 1 1461 204 0 83 0 chr9 114877534 114877570 -9198602 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 1 1461 646 190 0 150 chr9 114878005 114878171 -9198001 + B1_Mur4 SINE Alu 2 141 -9 1 1461 396 0 0 0 chr9 114878171 114878215 -9197957 + (CCA)n Simple_repeat Simple_repeat 3 46 0 1 1461 269 172 16 0 chr9 114878290 114878354 -9197818 + CT-rich Low_complexity Low_complexity 1 65 0 1 1461 743 234 101 5 chr9 114878358 114878547 -9197625 - ID_B1 SINE B4 -16 208 2 1 1461 236 171 0 0 chr9 114878605 114878646 -9197526 - L1MD LINE L1 -1257 4889 4849 1 1461 497 313 67 60 chr9 114878648 114878933 -9197239 + B4A SINE B4 2 288 -4 1 1461 243 249 38 0 chr9 114879035 114879115 -9197057 + PB1D10 SINE Alu 31 121 -6 1 1461 239 225 13 78 chr9 114879162 114879239 -9196933 + ID4 SINE ID 1 72 -11 1 1461 2097 121 15 6 chr9 114879247 114879581 -9196591 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1461 21740 74 37 8 chr9 114879581 114882565 -9193607 + IAPEz-int LTR ERVK 8 3076 -3405 1 1461 6383 58 12 18 chr9 114882551 114883406 -9192766 + IAPEz-int LTR ERVK 5630 6479 -2 1 1461 2097 121 15 6 chr9 114883408 114883742 -9192430 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1461 726 101 0 0 chr9 114883776 114883885 -9192287 + (GA)n Simple_repeat Simple_repeat 2 110 0 1 1461 362 257 18 98 chr9 114883897 114884009 -9192163 - ID_B1 SINE B4 -23 201 99 1 1461 1184 92 11 22 chr9 114884017 114884195 -9191977 - B2_Mm1t SINE B2 -17 176 1 1 1461 1622 31 0 0 chr9 114884217 114884410 -9191762 - B2_Mm1a SINE B2 0 193 1 1 1461 1519 41 0 5 chr9 114884422 114884616 -9191556 - B2_Mm1a SINE B2 0 193 1 1 1461 23 0 0 0 chr9 114884695 114884718 -9191454 + GC_rich Low_complexity Low_complexity 1 23 0 1 1461 733 215 0 13 chr9 114885044 114885195 -9190977 + B1F2 SINE Alu 1 149 0 1 1461 264 277 72 0 chr9 114885354 114885437 -9190735 + B4 SINE B4 202 290 -2 1 1461 302 232 14 0 chr9 114885540 114885609 -9190563 + RSINE1 SINE B4 3 72 -93 1 1461 416 258 28 77 chr9 114885596 114885739 -9190433 + RSINE1 SINE B4 17 152 -13 1 1461 511 221 136 32 chr9 114885805 114885959 -9190213 + B3 SINE B2 1 170 -46 1 1461 423 204 102 0 chr9 114885950 114886048 -9190124 + ID_B1 SINE B4 94 201 -23 1 1461 276 30 0 0 chr9 114886129 114886162 -9190010 + (TCCCC)n Simple_repeat Simple_repeat 1 33 0 1 1461 702 155 0 30 chr9 114886170 114886303 -9189869 - B1_Mur3 SINE Alu -20 129 1 1 1461 366 273 0 61 chr9 114886303 114886316 -9189856 - ID_B1 SINE B4 -16 206 70 1 1461 497 16 16 0 chr9 114886531 114886593 -9189579 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1 1461 311 137 14 0 chr9 114887695 114887768 -9188404 + (CGG)n Simple_repeat Simple_repeat 3 76 0 1 1461 203 265 0 0 chr9 114887821 114887870 -9188302 + (CAG)n Simple_repeat Simple_repeat 1 49 0 1 1461 670 207 29 15 chr9 114888612 114888749 -9187423 + B1F1 SINE Alu 5 143 -6 1 1461 263 156 0 43 chr9 114890136 114890183 -9185989 - L2b LINE L2 -9 3366 3322 1 1461 655 183 124 28 chr9 114890345 114890527 -9185645 + B3 SINE B2 1 195 0 1 1461 640 211 49 37 chr9 114890597 114890759 -9185413 - RSINE1 SINE B4 0 165 2 1 1461 321 231 0 30 chr9 114890866 114890933 -9185239 - ID_B1 SINE B4 -1 223 159 1 1461 565 252 8 0 chr9 114891001 114891120 -9185052 + PB1D7 SINE Alu 1 120 0 1 1461 21 57 0 0 chr9 114891146 114891181 -9184991 + AT_rich Low_complexity Low_complexity 1 35 0 1 1461 1352 74 0 22 chr9 114891208 114891388 -9184784 - B2_Mm2 SINE B2 -18 177 2 1 1461 649 49 0 0 chr9 114891388 114891469 -9184703 - B1_Mus1 SINE Alu -66 82 2 1 1461 285 29 0 0 chr9 114891480 114891514 -9184658 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1461 618 268 18 73 chr9 114892062 114892227 -9183945 - RSINE1 SINE B4 -2 163 8 1 1461 284 175 35 0 chr9 114892458 114892515 -9183657 - ID SINE ID -151 73 15 1 1461 618 258 98 5 chr9 114892553 114892708 -9183464 + B3A SINE B2 1 166 -27 1 1461 369 0 0 0 chr9 114892708 114892749 -9183423 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1461 225 338 132 81 chr9 114892749 114892767 -9183405 + B2_Mm1t SINE B2 167 183 -10 1 1461 351 0 0 0 chr9 114892796 114892835 -9183337 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1461 366 231 0 0 chr9 114893081 114893172 -9183000 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1461 492 245 36 54 chr9 114893225 114893337 -9182835 + PB1D9 SINE Alu 3 112 -8 1 1461 637 261 25 188 chr9 114893562 114893802 -9182370 + B3 SINE B2 2 202 -14 1 1461 822 227 35 44 chr9 114893891 114894117 -9182055 - ID_B1 SINE B4 0 224 1 1 1461 21 36 0 0 chr9 114894550 114894578 -9181594 + AT_rich Low_complexity Low_complexity 1 28 0 1 1461 222 222 0 0 chr9 114894578 114894632 -9181540 + CT-rich Low_complexity Low_complexity 3 56 0 1 1461 266 259 96 24 chr9 114894660 114894743 -9181429 - RSINE1 SINE B4 0 165 77 1 1461 411 276 31 8 chr9 114894782 114894910 -9181262 - RSINE1 SINE B4 -24 141 11 1 1461 321 159 0 0 chr9 114896166 114896229 -9179943 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1461 413 198 23 23 chr9 114896236 114896324 -9179848 - RSINE1 SINE B4 0 165 78 1 1461 769 262 49 5 chr9 114896406 114896609 -9179563 - ID_B1 SINE B4 -11 213 2 1 1461 526 287 72 67 chr9 114896697 114896906 -9179266 - MLT1D LTR MaLR -295 210 1 1 1461 223 237 0 42 chr9 114896941 114897060 -9179112 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 1461 729 163 0 33 chr9 114897076 114897260 -9178912 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1461 476 179 6 38 chr9 114897276 114897433 -9178739 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 1461 386 88 38 64 chr9 114897450 114897607 -9178565 + (CTGTG)n Simple_repeat Simple_repeat 2 154 0 1 1461 261 210 7 53 chr9 114897646 114897797 -9178375 + (TG)n Simple_repeat Simple_repeat 1 144 0 1 1461 493 264 159 27 chr9 114897803 114898060 -9178112 - B4 SINE B4 0 292 2 1 1461 805 211 75 66 chr9 114898576 114898789 -9177383 + ID_B1 SINE B4 2 216 -8 1 1461 415 270 159 14 chr9 114898811 114899005 -9177167 + B4A SINE B4 7 230 -62 1 1461 297 244 142 82 chr9 114899005 114899139 -9177033 + RSINE1 SINE B4 2 143 -22 1 1461 255 211 25 38 chr9 114899205 114899284 -9176888 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1461 346 277 21 11 chr9 114899802 114899897 -9176275 - MER58A DNA MER1_type -126 98 3 1 1461 399 127 0 0 chr9 114900024 114900087 -9176085 + (CGTG)n Simple_repeat Simple_repeat 1 63 0 1 1461 1137 128 0 0 chr9 114900087 114900267 -9175905 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1461 220 253 57 95 chr9 114900276 114900381 -9175791 - RSINE1 SINE B4 -56 109 9 1 1461 289 247 86 0 chr9 114900396 114900477 -9175695 - ID_B1 SINE B4 -35 189 102 1 1461 564 265 0 0 chr9 114900501 114900633 -9175539 - B1F1 SINE Alu 0 149 18 1 1461 1477 48 26 21 chr9 114900684 114900844 -9175328 + B2_Mm1t SINE B2 1 160 -33 1 1461 207 0 0 0 chr9 114900844 114900867 -9175305 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1461 1477 48 26 21 chr9 114900867 114900898 -9175274 + B2_Mm1t SINE B2 161 193 0 1 1461 328 193 31 2 chr9 114900916 114900992 -9175180 - MTEb LTR MaLR -4 375 294 1 1461 306 253 24 0 chr9 114901010 114901093 -9175079 - RSINE1 SINE B4 -68 97 13 1 1461 253 217 53 126 chr9 114901162 114901257 -9174915 + MLT1J LTR MaLR 223 310 -202 1 1461 1321 110 0 5 chr9 114901421 114901613 -9174559 - B2_Mm2 SINE B2 -4 191 1 1 1461 1121 193 15 0 chr9 114901763 114901965 -9174207 - B3 SINE B2 -10 206 2 1 1461 1763 248 29 13 chr9 114902029 114902413 -9173759 + MTD LTR MaLR 13 402 -17 1 1461 329 288 0 103 chr9 114902410 114902526 -9173646 - B1F1 SINE Alu -16 104 1 1 1461 1389 65 0 1 chr9 114902537 114903247 -9172925 + (TCTA)n Simple_repeat Simple_repeat 1 709 0 1 1461 475 275 63 7 chr9 114903464 114903607 -9172565 + ID_B1 SINE B4 1 151 -73 1 1461 608 212 6 70 chr9 114903611 114903768 -9172404 + B1_Mur3 SINE Alu 2 148 -1 1 1461 898 161 42 0 chr9 114903783 114903926 -9172246 + B1_Mur3 SINE Alu 1 149 0 1 1461 584 286 37 0 chr9 114903954 114904029 -9172143 + ID SINE ID 4 84 -140 1 1461 406 274 18 9 chr9 114904029 114904143 -9172029 + PB1D10 SINE Alu 3 117 0 1 1461 774 270 121 58 chr9 114904210 114904556 -9171616 - MTE2b LTR MaLR -8 371 4 1 1461 1132 254 75 17 chr9 114904790 114905139 -9171033 - RLTR14 LTR ERV1 -12 370 2 1 1461 311 182 30 15 chr9 114905294 114905361 -9170811 - ID_B1 SINE B4 0 224 157 1 1461 1453 69 37 0 chr9 114905398 114905586 -9170586 + B2_Mm2 SINE B2 1 195 0 1 1461 1102 101 0 0 chr9 114905588 114905736 -9170436 + B1_Mus1 SINE Alu 1 148 0 1 1461 580 99 173 29 chr9 114905885 114905896 -9170276 - PB1D9 SINE Alu -1 119 109 1 1461 210 37 0 0 chr9 114905896 114905923 -9170249 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1461 641 58 25 4 chr9 114905923 114906015 -9170157 - B1_Mus1 SINE Alu -12 108 1 1 1461 456 148 36 24 chr9 114905947 114906030 -9170142 - B4 SINE B4 -140 152 69 1 1461 321 193 0 0 chr9 114906065 114906122 -9170050 - ID_B1 SINE B4 -60 164 108 1 1461 369 109 0 0 chr9 114906144 114906199 -9169973 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 1 1461 971 114 26 13 chr9 114906201 114906352 -9169820 - B2_Mm2 SINE B2 -34 161 9 1 1461 240 234 155 0 chr9 114906773 114906848 -9169324 + ID2 SINE ID 9 93 -59 1 1461 693 240 79 37 chr9 114906872 114907062 -9169110 + ID_B1 SINE B4 16 213 -11 1 1461 420 301 28 49 chr9 114907246 114907389 -9168783 - Charlie12 DNA MER1_type -5 2868 2729 1 1461 469 320 122 7 chr9 114907817 114907965 -9168207 - RSINE1 SINE B4 0 165 1 1 1461 1189 246 52 49 chr9 114908284 114908494 -9167678 - B4 SINE B4 0 292 75 1 1461 1130 242 48 84 chr9 114908494 114908886 -9167286 + MTE2a LTR MaLR 1 378 -1 1 1461 1189 246 52 49 chr9 114908886 114908961 -9167211 - B4 SINE B4 -218 74 6 1 1461 817 230 80 0 chr9 114909538 114909738 -9166434 + B3 SINE B2 1 216 0 1 1461 611 260 7 27 chr9 114909761 114909911 -9166261 + B1_Mur2 SINE Alu 2 148 -1 1 1461 334 277 76 49 chr9 114909993 114910137 -9166035 - B1F1 SINE Alu 0 149 2 1 1461 457 232 286 6 chr9 114910137 114910170 -9166002 - ID SINE ID -142 82 2 1 1461 261 0 0 0 chr9 114910397 114910426 -9165746 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1461 262 350 67 19 chr9 114910446 114910551 -9165621 - 7SLRNA srpRNA srpRNA -199 115 6 1 1461 930 220 6 0 chr9 114910468 114910636 -9165536 - ID_B1 SINE B4 -54 170 2 1 1461 293 247 90 13 chr9 114910578 114910656 -9165516 - ZP3AR Satellite Satellite -108 104 21 1 1461 268 312 147 35 chr9 114910707 114910823 -9165349 - RSINE1 SINE B4 -36 129 1 1 1461 23 54 0 0 chr9 114910858 114910895 -9165277 + AT_rich Low_complexity Low_complexity 1 37 0 1 1461 198 236 0 0 chr9 114910900 114910955 -9165217 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1461 627 238 0 0 chr9 114910974 114911286 -9164886 + (TG)n Simple_repeat Simple_repeat 1 312 0 1 1461 258 86 0 0 chr9 114911287 114911322 -9164850 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1461 552 239 0 0 chr9 114911322 114911485 -9164687 + (TG)n Simple_repeat Simple_repeat 2 164 0 1 1461 629 262 193 29 chr9 114911493 114911737 -9164435 - B4A SINE B4 -6 286 3 1 1461 355 294 48 40 chr9 114911741 114911865 -9164307 - L1MD LINE L1 -2726 3420 3296 1 1461 497 309 7 14 chr9 114911875 114912016 -9164156 - B1F1 SINE Alu -5 144 5 1 1461 293 282 143 74 chr9 114912280 114912510 -9163662 + B4 SINE B4 44 289 -3 1 1461 606 280 0 0 chr9 114912766 114912898 -9163274 - RSINE1 SINE B4 -33 132 1 1 1461 259 281 0 0 chr9 114913268 114913325 -9162847 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1461 620 183 8 33 chr9 114913327 114913576 -9162596 + (TATG)n Simple_repeat Simple_repeat 1 242 0 1 1461 1007 257 43 64 chr9 114913649 114914023 -9162149 + MTE2a LTR MaLR 4 356 -63 1 1461 367 300 60 0 chr9 114914919 114915019 -9161153 - ID_B1 SINE B4 -6 218 113 1 1461 680 208 57 51 chr9 114915010 114915167 -9161005 - B3A SINE B2 -38 160 3 1 1461 183 42 0 0 chr9 114915242 114915266 -9160906 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1461 1216 50 0 0 chr9 114915267 114915407 -9160765 - B1_Mus1 SINE Alu -8 140 1 1 1461 1419 128 27 18 chr9 114915531 114915754 -9160418 - URR1B DNA MER1_type 0 225 1 1 1461 238 315 21 32 chr9 114915765 114915853 -9160319 - Cheshire DNA MER1_type -2163 257 171 1 1461 832 266 39 47 chr9 114915853 114916086 -9160086 + B4A SINE B4 1 231 -61 1 1461 335 149 0 13 chr9 114916192 114916267 -9159905 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1461 882 235 30 168 chr9 114916270 114916358 -9159814 + B4 SINE B4 3 50 -242 1 1461 888 236 10 55 chr9 114916358 114916560 -9159612 - B3A SINE B2 -5 193 1 1 1461 882 235 30 168 chr9 114916560 114916768 -9159404 + B4 SINE B4 51 258 -34 1 1461 303 49 0 0 chr9 114916774 114916815 -9159357 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1461 394 363 11 38 chr9 114917308 114917494 -9158678 + MARNA DNA Mariner 90 270 -316 1 1461 245 98 24 0 chr9 114917997 114918038 -9158134 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1461 316 337 0 0 chr9 114918041 114918124 -9158048 - RMER15 LTR ERVL -113 462 380 1 1461 246 297 0 0 chr9 114918140 114918214 -9157958 - Lx8 LINE L1 -247 7226 7153 1 1461 1082 214 9 9 chr9 114918468 114918680 -9157492 - B3 SINE B2 0 216 5 1 1461 322 265 70 0 chr9 114919316 114919440 -9156732 - B1F SINE Alu -7 142 1 1 1461 1016 169 121 5 chr9 114919747 114919937 -9156235 - B3 SINE B2 -2 214 3 1 1461 188 34 0 33 chr9 114919961 114919991 -9156181 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1461 207 0 0 0 chr9 114919991 114920013 -9156159 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1461 422 270 99 28 chr9 114920025 114920166 -9156006 - B3 SINE B2 -65 151 1 1 1461 194 156 0 22 chr9 114920419 114920465 -9155707 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1 1461 402 186 45 34 chr9 114920570 114920659 -9155513 + PB1D10 SINE Alu 2 91 -26 1 1461 225 65 0 0 chr9 114920671 114920702 -9155470 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1461 530 238 106 26 chr9 114920941 114921092 -9155080 - RSINE1 SINE B4 0 165 3 1 1461 202 0 29 57 chr9 114921231 114921266 -9154906 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 1 1461 352 235 24 24 chr9 114922805 114922888 -9153284 - RSINE1 SINE B4 0 165 83 1 1461 503 288 22 52 chr9 114922912 114923083 -9153089 - B4A SINE B4 -60 164 1 1 1461 651 174 21 0 chr9 114923143 114923287 -9152885 + C-rich Low_complexity Low_complexity 5 151 0 1 1461 317 284 0 29 chr9 114923287 114923392 -9152780 - PB1D10 SINE Alu -13 104 3 1 1461 944 26 0 0 chr9 114924270 114924386 -9151786 + B1_Mus2 SINE Alu 32 147 0 1 1461 2896 49 3 0 chr9 114924438 114924783 -9151389 + ORR1A0 LTR MaLR 1 346 0 1 1461 832 38 0 0 chr9 114924783 114924888 -9151284 + ORR1A0-int LTR MaLR 1 105 -1687 1 1461 325 179 18 0 chr9 114924885 114924941 -9151231 - RSINE1 SINE B4 -29 136 80 1 1461 480 267 95 0 chr9 114924958 114925074 -9151098 - RSINE1 SINE B4 -29 136 10 1 1461 1134 216 0 9 chr9 114925100 114925315 -9150857 - B3 SINE B2 -3 213 1 1 1461 489 252 0 0 chr9 114925328 114925427 -9150745 - ID_B1 SINE B4 -1 223 125 1 1461 1273 237 96 3 chr9 114925481 114925824 -9150348 - MTEb LTR MaLR -4 375 1 1 1461 447 19 0 0 chr9 114925919 114925971 -9150201 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1461 486 33 0 0 chr9 114925971 114926030 -9150142 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1461 414 264 0 21 chr9 114926030 114926123 -9150049 - PB1D10 SINE Alu -26 91 1 1 1461 606 230 23 116 chr9 114926669 114926885 -9149287 + B3A SINE B2 2 197 -1 1 1461 689 266 92 5 chr9 114926929 114927114 -9149058 + ID_B1 SINE B4 8 208 -16 1 1461 432 0 0 0 chr9 114927145 114927193 -9148979 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1461 539 229 0 27 chr9 114927199 114927311 -9148861 - RSINE1 SINE B4 -26 139 31 1 1461 264 91 0 0 chr9 114927949 114927993 -9148179 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1461 640 274 6 35 chr9 114927997 114928167 -9148005 - RSINE1 SINE B4 0 165 1 1 1461 912 234 124 34 chr9 114928697 114928962 -9147210 - B4A SINE B4 0 292 4 1 1461 846 146 0 0 chr9 114929863 114930034 -9146138 + (TC)n Simple_repeat Simple_repeat 2 172 0 1 1461 560 233 7 58 chr9 114930038 114930175 -9145997 - RSINE1 SINE B4 -31 134 5 1 1461 604 195 85 0 chr9 114930209 114930327 -9145845 - B1F2 SINE Alu -21 128 1 1 1461 1436 148 9 0 chr9 114930356 114930579 -9145593 - URR1B DNA MER1_type 0 225 1 1 1461 408 344 53 13 chr9 114930581 114930808 -9145364 - RMER15 LTR ERVL -21 554 319 1 1461 342 262 142 80 chr9 114931712 114931874 -9144298 - RMER15 LTR ERVL -68 507 336 1 1461 949 229 14 33 chr9 114932105 114932317 -9143855 + B3 SINE B2 6 213 -3 1 1461 573 252 105 19 chr9 114932333 114932345 -9143827 - B3 SINE B2 -26 190 180 1 1461 219 36 0 0 chr9 114932345 114932373 -9143799 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1461 573 252 105 19 chr9 114932373 114932522 -9143650 - B3 SINE B2 -37 179 15 1 1461 432 55 0 0 chr9 114932733 114932788 -9143384 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1461 287 319 71 0 chr9 114933472 114933585 -9142587 - MER20 DNA MER1_type 0 219 99 1 1461 507 313 11 57 chr9 114933846 114934022 -9142150 + B4 SINE B4 9 176 -116 1 1461 547 204 0 0 chr9 114934353 114934446 -9141726 - B3 SINE B2 -4 212 120 1 1461 271 299 181 28 chr9 114934545 114934793 -9141379 - B4A SINE B4 -4 288 3 1 1461 381 324 48 48 chr9 114934793 114934806 -9141366 + MER58A DNA MER1_type 54 65 -159 1 1461 4062 121 99 19 chr9 114934806 114935505 -9140667 + RMER6A LTR ERVK 2 756 0 1 1461 381 324 48 48 chr9 114935505 114935637 -9140535 + MER58A DNA MER1_type 66 199 -25 1 1461 272 244 71 35 chr9 114935641 114935652 -9140520 - B1F SINE Alu 0 149 139 1 1461 1443 57 0 45 chr9 114935652 114935853 -9140319 - B2_Mm2 SINE B2 -1 194 3 1 1461 272 244 71 35 chr9 114935853 114935926 -9140246 - B1F SINE Alu -11 138 62 1 1461 342 0 0 0 chr9 114936412 114936450 -9139722 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1461 298 93 0 0 chr9 114936450 114936493 -9139679 - ID SINE ID -149 75 33 1 1461 402 21 0 0 chr9 114936498 114936545 -9139627 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1461 273 374 17 9 chr9 114936573 114936602 -9139570 - ID_B1 SINE B4 -17 207 91 1 1461 316 224 69 23 chr9 114936602 114936689 -9139483 - B1F1 SINE Alu -49 100 10 1 1461 230 328 0 0 chr9 114936692 114936759 -9139413 + CT-rich Low_complexity Low_complexity 4 70 0 1 1461 862 48 0 0 chr9 114936789 114936894 -9139278 - B2_Mm2 SINE B2 -88 107 3 1 1461 237 268 82 27 chr9 114936894 114936967 -9139205 - B1F SINE Alu -11 138 62 1 1461 342 0 0 0 chr9 114937453 114937491 -9138681 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1461 298 93 0 0 chr9 114937491 114937534 -9138638 - ID SINE ID -149 75 33 1 1461 420 20 0 0 chr9 114937539 114937588 -9138584 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1461 273 374 17 9 chr9 114937616 114937645 -9138527 - ID_B1 SINE B4 -17 207 91 1 1461 316 224 69 23 chr9 114937645 114937732 -9138440 - B1F1 SINE Alu -49 100 10 1 1461 230 328 0 0 chr9 114937735 114937802 -9138370 + CT-rich Low_complexity Low_complexity 4 70 0 1 1461 799 75 9 0 chr9 114937832 114937939 -9138233 - B2_Mm1t SINE B2 -85 108 1 1 1461 303 273 0 0 chr9 114937965 114938031 -9138141 + ID4_ SINE ID 3 68 -15 1 1461 629 263 118 0 chr9 114938069 114938255 -9137917 - ID_B1 SINE B4 -15 209 2 1 1461 286 161 47 47 chr9 114938280 114938365 -9137807 - RMER1B Other Other -7 1059 975 1 1461 756 240 98 5 chr9 114939074 114939258 -9136914 + B3 SINE B2 14 214 -2 1 1461 245 141 56 0 chr9 114939260 114939331 -9136841 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1461 272 310 133 71 chr9 114939334 114939671 -9136501 - L1MC3 LINE L1 -23 7762 7405 1 1461 1163 227 117 28 chr9 114939726 114940016 -9136156 - MTE2a LTR MaLR 0 379 64 1 1461 279 127 140 35 chr9 114940344 114940401 -9135771 - MTE2a LTR MaLR -298 81 19 1 1461 2761 42 0 6 chr9 114940507 114940843 -9135329 - L1Md_F3 LINE L1 0 6584 6251 1 1461 666 219 213 25 chr9 114940898 114941206 -9134966 + MTD LTR MaLR 3 404 -15 1 1461 252 245 103 31 chr9 114941192 114941219 -9134953 - MT2B LTR ERVL -242 359 260 1 1461 295 182 91 0 chr9 114941219 114941285 -9134887 - PB1D10 SINE Alu -43 74 3 1 1461 293 219 13 27 chr9 114941231 114941306 -9134866 - B4A SINE B4 -150 142 69 1 1461 467 270 53 0 chr9 114941329 114941481 -9134691 - L1MC3 LINE L1 -555 7230 7071 1 1461 1194 267 48 20 chr9 114941531 114941825 -9134347 - MER44B DNA MER2_type -246 304 3 1 1461 941 298 106 44 chr9 114941953 114942757 -9133415 - L1MC3 LINE L1 -971 6911 6011 1 1461 486 240 47 16 chr9 114942859 114942986 -9133186 - B1F1 SINE Alu -13 136 6 1 1461 811 206 74 25 chr9 114943423 114943627 -9132545 + ID_B1 SINE B4 2 205 -87 1 1461 211 283 0 0 chr9 114943629 114943675 -9132497 + polypurine Low_complexity Low_complexity 1 46 0 1 1461 351 0 0 0 chr9 114944326 114944365 -9131807 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 1461 4009 28 0 7 chr9 114944387 114944851 -9131321 - L1Md_A LINE L1 0 6582 6122 1 1461 535 275 7 44 chr9 114944896 114945033 -9131139 - RSINE1 SINE B4 -33 132 1 1 1461 514 295 43 68 chr9 114945033 114945226 -9130946 - B4 SINE B4 -103 189 2 1 1461 460 211 48 9 chr9 114945275 114945380 -9130792 - PB1D10 SINE Alu -8 109 1 1 1461 331 234 229 76 chr9 114945896 114946132 -9130040 + B4A SINE B4 3 274 -18 1 1461 448 122 24 0 chr9 114946183 114946265 -9129907 + (GGGAGA)n Simple_repeat Simple_repeat 2 85 0 1 1461 1143 181 240 3 chr9 114946376 114946680 -9129492 + MTD LTR MaLR 42 417 -2 1 1461 913 205 6 6 chr9 114946872 114947039 -9129133 - ID_B1 SINE B4 -54 170 4 1 1461 271 232 72 0 chr9 114947097 114947166 -9129006 - ID4_ SINE ID -9 74 1 1 1461 761 245 12 30 chr9 114947222 114947390 -9128782 - RSINE1 SINE B4 0 165 1 1 1461 287 299 54 36 chr9 114947958 114948000 -9128172 - ID_B1 SINE B4 -105 119 7 1 1461 298 261 14 0 chr9 114948000 114948069 -9128103 - ID4 SINE ID -7 76 7 1 1461 644 226 78 39 chr9 114948136 114948316 -9127856 - ID_B1 SINE B4 0 224 38 1 1461 226 227 121 0 chr9 114948276 114948342 -9127830 - ID4 SINE ID -7 76 3 1 1461 1922 138 11 104 chr9 114948553 114949005 -9127167 + RMER17C LTR ERVK 1 410 0 1 1461 417 219 236 38 chr9 114949120 114949277 -9126895 + B3A SINE B2 1 188 -7 1 1461 2998 128 65 0 chr9 114949386 114949861 -9126311 - RLTR19C LTR ERVK 0 506 1 1 1461 300 53 0 0 chr9 114950036 114950074 -9126098 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 182 453 223 16 62 chr9 114950074 114950203 -9125969 - RSINE1 SINE B4 -41 124 2 1 1462 388 233 35 0 chr9 114950279 114950365 -9125807 + ID_B1 SINE B4 110 198 -26 1 1462 405 0 0 0 chr9 114950966 114951011 -9125161 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1462 261 261 0 97 chr9 114951020 114951092 -9125080 - RSINE1 SINE B4 -19 146 82 1 1462 574 223 49 8 chr9 114951443 114951565 -9124607 - RSINE1 SINE B4 -29 136 10 1 1462 785 85 127 132 chr9 114951608 114951797 -9124375 - B2_Mm2 SINE B2 -6 189 2 1 1462 329 128 0 0 chr9 114951837 114951884 -9124288 - ID_B1 SINE B4 -49 175 129 1 1462 750 212 109 29 chr9 114953132 114953307 -9122865 - B3 SINE B2 -24 192 4 1 1462 825 258 73 22 chr9 114953349 114953622 -9122550 - B4 SINE B4 -2 290 4 1 1462 180 125 0 0 chr9 114954238 114954270 -9121902 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 1 1462 686 286 57 0 chr9 114954270 114954462 -9121710 - ID_B1 SINE B4 -13 211 9 1 1462 938 273 86 4 chr9 114954936 114955204 -9120968 + B4A SINE B4 3 292 0 1 1462 279 237 0 0 chr9 114955237 114955330 -9120842 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1462 526 207 0 53 chr9 114955354 114955543 -9120629 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1462 443 254 12 10 chr9 114955639 114955776 -9120396 - B3 SINE B2 -55 140 1 1 1462 683 298 72 22 chr9 114955817 114956095 -9120077 - B4A SINE B4 0 292 1 1 1462 544 233 132 10 chr9 114956751 114956906 -9119266 - ID_B1 SINE B4 -46 246 81 1 1462 419 52 17 0 chr9 114956916 114956974 -9119198 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1462 519 17 0 0 chr9 114957036 114957096 -9119076 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1462 697 274 96 67 chr9 114957111 114957393 -9118779 - B4 SINE B4 -2 290 1 1 1462 282 235 29 0 chr9 114957393 114957461 -9118711 - PB1D10 SINE Alu -41 76 7 1 1462 210 37 0 0 chr9 114958630 114958657 -9117515 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1462 426 109 0 5 chr9 114958669 114958734 -9117438 - B2_Mm2 SINE B2 -107 109 47 1 1462 1277 91 28 0 chr9 114958761 114958937 -9117235 - B2_Mm2 SINE B2 -13 182 2 1 1462 500 277 447 22 chr9 114959775 114960039 -9116133 - MTEa LTR MaLR -2 377 2 1 1462 685 280 0 45 chr9 114960271 114960473 -9115699 + B3A SINE B2 1 193 -5 1 1462 821 133 0 14 chr9 114960516 114960620 -9115552 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 1 1462 1421 73 5 5 chr9 114960620 114960812 -9115360 + B2_Mm1a SINE B2 2 193 0 1 1462 821 133 0 14 chr9 114960812 114960852 -9115320 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 1 1462 270 203 63 63 chr9 114960975 114961054 -9115118 - ID4_ SINE ID -2 81 3 1 1462 2598 178 44 50 chr9 114961267 114961375 -9114797 - RLTR20B2 LTR ERVK 0 560 453 1 1462 378 0 0 0 chr9 114961375 114961417 -9114755 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1462 2598 178 44 50 chr9 114961417 114961871 -9114301 - RLTR20B2 LTR ERVK -108 452 1 1 1462 656 195 16 0 chr9 114961981 114962104 -9114068 + B4A SINE B4 150 274 -18 1 1462 1010 219 9 24 chr9 114962698 114962908 -9113264 + B3 SINE B2 4 210 -6 1 1462 369 215 0 0 chr9 114963340 114963433 -9112739 + CT-rich Low_complexity Low_complexity 1 93 0 1 1462 660 267 29 118 chr9 114963460 114963698 -9112474 - B4 SINE B4 -73 219 3 1 1462 334 286 123 9 chr9 114963747 114963853 -9112319 - RSINE1 SINE B4 -42 123 6 1 1462 825 293 128 9 chr9 114964152 114964489 -9111683 - MTE2a LTR MaLR -2 377 1 1 1462 825 206 88 0 chr9 114964514 114964708 -9111464 + MTEb LTR MaLR 54 264 -115 1 1462 427 275 31 80 chr9 114965362 114965524 -9110648 + RSINE1 SINE B4 7 160 -5 1 1462 475 297 97 42 chr9 114965596 114965761 -9110411 + ID_B1 SINE B4 51 224 0 1 1462 1223 238 63 19 chr9 114965954 114966224 -9109948 + MTEa LTR MaLR 3 284 -95 1 1462 266 175 0 66 chr9 114966554 114966615 -9109557 + MTE2a LTR MaLR 1 57 -322 1 1462 313 210 17 8 chr9 114966592 114966606 -9109566 + ORR1B1-int LTR MaLR 633 647 -862 1 1462 989 68 0 64 chr9 114966606 114966737 -9109435 + B1_Mus1 SINE Alu 2 127 -21 1 1462 417 20 0 0 chr9 114966737 114966787 -9109385 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 1 1462 989 68 0 64 chr9 114966787 114966812 -9109360 + B1_Mus1 SINE Alu 128 148 0 1 1462 818 251 73 114 chr9 114966843 114967212 -9108960 + MTE2a LTR MaLR 21 374 -5 1 1462 486 61 0 0 chr9 114967886 114967952 -9108220 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1462 267 107 25 51 chr9 114968370 114968449 -9107723 + CT-rich Low_complexity Low_complexity 4 80 0 1 1462 323 342 66 33 chr9 114968450 114968601 -9107571 - HAL1-3A_ME LINE L1 -419 2439 2284 1 1462 491 125 0 37 chr9 114968603 114968711 -9107461 + CT-rich Low_complexity Low_complexity 2 105 0 1 1462 649 250 15 45 chr9 114968714 114968889 -9107283 - ID_B1 SINE B4 -46 246 78 1 1462 849 235 38 0 chr9 114968918 114969101 -9107071 - B3 SINE B2 -7 209 20 1 1462 481 259 9 0 chr9 114969118 114969226 -9106946 - PB1D7 SINE Alu -7 113 5 1 1462 691 259 35 23 chr9 114969306 114969480 -9106692 + ID_B1 SINE B4 1 176 -48 1 1462 453 243 0 72 chr9 114969393 114969504 -9106668 + PB1D10 SINE Alu 13 115 -2 1 1462 383 275 46 82 chr9 114969498 114969604 -9106568 - MER119 DNA MER1_type -102 481 379 1 1462 1196 54 0 26 chr9 114969604 114969742 -9106430 + B1_Mus2 SINE Alu 1 138 -9 1 1462 341 22 22 0 chr9 114969742 114969788 -9106384 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1462 1196 54 0 26 chr9 114969788 114969800 -9106372 + B1_Mus2 SINE Alu 139 147 0 1 1462 383 275 46 82 chr9 114969800 114969887 -9106285 - MER119 DNA MER1_type -205 378 295 1 1462 656 186 0 3 chr9 114970227 114970528 -9105644 + (TG)n Simple_repeat Simple_repeat 1 299 0 1 1462 432 323 102 0 chr9 114970528 114970695 -9105477 - RMER5 LTR ERV1 0 534 351 1 1462 691 262 6 53 chr9 114971220 114971389 -9104783 + RSINE1 SINE B4 5 165 0 1 1462 567 226 0 0 chr9 114971394 114971527 -9104645 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 1462 311 152 0 0 chr9 114971529 114971575 -9104597 + HAL1-3A_ME LINE L1 1975 2020 -838 1 1462 661 165 31 23 chr9 114971618 114971748 -9104424 + B1_Mur1 SINE Alu 18 148 -1 1 1462 313 224 0 29 chr9 114971883 114971952 -9104220 - HAL1-3A_ME LINE L1 -813 2045 1979 1 1462 1570 43 0 5 chr9 114972038 114972225 -9103947 - B2_Mm2 SINE B2 -8 187 2 1 1462 372 94 0 0 chr9 114972257 114972310 -9103862 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1462 318 206 0 0 chr9 114972801 114972874 -9103298 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1462 1492 224 52 28 chr9 114972910 114973272 -9102900 - MTEb LTR MaLR 0 379 9 1 1462 1167 68 0 33 chr9 114973920 114974072 -9102100 - B1_Mus2 SINE Alu 0 147 1 1 1462 857 243 10 29 chr9 114974081 114974281 -9101891 - B3A SINE B2 -9 186 2 1 1462 29 0 0 0 chr9 114974291 114974320 -9101852 + AT_rich Low_complexity Low_complexity 1 29 0 1 1462 243 0 0 0 chr9 114974320 114974347 -9101825 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 1 1462 1253 55 0 0 chr9 114974347 114974493 -9101679 - B1_Mus1 SINE Alu -2 146 1 1 1462 658 249 133 0 chr9 114974702 114974867 -9101305 - B3 SINE B2 -28 188 2 1 1462 183 114 0 0 chr9 114974999 114975034 -9101138 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1462 1230 55 0 0 chr9 114975040 114975186 -9100986 - B1_Mm SINE Alu 0 147 2 1 1462 261 0 0 0 chr9 114975369 114975398 -9100774 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1462 1050 282 15 0 chr9 114975398 114975657 -9100515 - B4A SINE B4 -23 269 7 1 1462 407 219 102 66 chr9 114975678 114975815 -9100357 - B1F1 SINE Alu -6 143 2 1 1462 213 65 0 0 chr9 114976170 114976201 -9099971 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1 1462 537 16 0 0 chr9 114976453 114976515 -9099657 + (GGA)n Simple_repeat Simple_repeat 1 62 0 1 1462 1111 203 134 48 chr9 114976602 114976871 -9099301 - B4A SINE B4 0 292 1 1 1462 402 247 0 0 chr9 114977499 114977572 -9098600 - ID2 SINE ID -10 73 1 1 1462 240 317 18 82 chr9 114977683 114977793 -9098379 - B1F SINE Alu -8 112 10 1 1462 452 117 13 0 chr9 114978099 114978176 -9097996 + (TCC)n Simple_repeat Simple_repeat 2 79 0 1 1462 451 273 60 116 chr9 114978179 114978411 -9097761 - ID_B1 SINE B4 -4 220 2 1 1462 263 143 39 58 chr9 114978732 114978784 -9097388 - ID_B1 SINE B4 0 224 174 1 1462 212 290 135 39 chr9 114978878 114978982 -9097190 + B3A SINE B2 2 115 -83 1 1462 521 275 106 28 chr9 114978909 114979126 -9097046 + B4A SINE B4 45 278 -14 1 1462 1359 85 11 0 chr9 114979550 114979726 -9096446 - B2_Mm1t SINE B2 -14 179 2 1 1462 284 269 55 9 chr9 114979789 114979898 -9096274 - PB1D10 SINE Alu -2 115 2 1 1462 411 278 32 89 chr9 114980294 114980452 -9095720 + B4A SINE B4 134 282 -10 1 1462 337 277 26 18 chr9 114980539 114980653 -9095519 - MER3 DNA MER1_type -94 115 1 1 1462 1854 80 189 4 chr9 114980701 114980976 -9095196 + ORR1A3 LTR MaLR 1 326 0 1 1462 273 221 0 0 chr9 114981052 114981120 -9095052 + CT-rich Low_complexity Low_complexity 3 70 0 1 1462 540 153 91 10 chr9 114981264 114981363 -9094809 - B3 SINE B2 -109 107 1 1 1462 234 0 0 0 chr9 114981404 114981430 -9094742 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1462 186 43 0 0 chr9 114981430 114981452 -9094720 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1462 198 0 0 0 chr9 114981603 114981625 -9094547 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1462 772 269 14 46 chr9 114981898 114982182 -9093990 - B4 SINE B4 -16 276 2 1 1462 1060 238 161 20 chr9 114982848 114983153 -9093019 + MTE2b LTR MaLR 1 348 -31 1 1462 1280 65 0 10 chr9 114983216 114983418 -9092754 + (TTTC)n Simple_repeat Simple_repeat 1 200 0 1 1462 668 189 7 0 chr9 114983420 114983563 -9092609 + CT-rich Low_complexity Low_complexity 3 146 0 1 1462 497 151 0 156 chr9 114983569 114983781 -9092391 - RMER17C LTR ERVK -135 275 97 1 1462 27 0 0 0 chr9 114984089 114984116 -9092056 + AT_rich Low_complexity Low_complexity 1 27 0 1 1462 509 278 155 0 chr9 114984178 114984365 -9091807 + ID_B1 SINE B4 1 216 -8 1 1462 846 251 50 0 chr9 114984384 114984563 -9091609 + B3 SINE B2 1 188 -28 1 1462 386 333 8 0 chr9 114985055 114985172 -9091000 - RSINE1 SINE B4 -29 136 19 1 1462 371 324 9 0 chr9 114985187 114985298 -9090874 - RSINE1 SINE B4 -35 130 19 1 1462 490 290 14 1 chr9 114985291 114985437 -9090735 - B4A SINE B4 -37 255 105 1 1462 1301 236 52 16 chr9 114985471 114985858 -9090314 - Lx9 LINE L1 0 7644 7244 1 1462 360 289 0 0 chr9 114985859 114985935 -9090237 - B4A SINE B4 -216 76 1 1 1462 410 252 19 0 chr9 114986493 114986596 -9089576 + PB1D7 SINE Alu 3 107 -13 1 1462 235 159 93 47 chr9 114986964 114987050 -9089122 - RCHARR1 DNA MER1_type -76 898 809 1 1462 3078 16 5 16 chr9 114987144 114987515 -9088657 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1462 53713 28 8 3 chr9 114987515 114993954 -9082218 - IAPEz-int LTR ERVK 0 6481 8 1 1462 3078 16 5 16 chr9 114993954 114994325 -9081847 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1462 213 335 147 40 chr9 114994374 114994551 -9081621 + B3A SINE B2 3 198 0 1 1462 466 326 169 19 chr9 114994592 114994893 -9081279 - Lx8 LINE L1 -137 7336 6991 1 1462 3515 23 10 0 chr9 114994893 114995285 -9080887 - MTA_Mm LTR MaLR 0 396 1 1 1462 466 326 169 19 chr9 114995285 114995361 -9080811 - Lx8 LINE L1 -483 6990 6902 1 1462 1712 216 63 20 chr9 114995361 114995757 -9080415 - RCHARR1 DNA MER1_type -198 776 364 1 1462 531 0 0 0 chr9 114995771 114995830 -9080342 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 1462 777 201 0 15 chr9 114995830 114995966 -9080206 - B1_Mur2 SINE Alu -8 141 8 1 1462 830 279 23 77 chr9 114995978 114996277 -9079895 - RCHARR1 DNA MER1_type -602 372 90 1 1462 556 124 61 20 chr9 114996319 114996418 -9079754 - B3 SINE B2 -113 103 1 1 1462 845 230 5 36 chr9 114996480 114996674 -9079498 - B3A SINE B2 -9 189 2 1 1462 1126 64 43 0 chr9 114996706 114996846 -9079326 - B1_Mus2 SINE Alu -1 146 1 1 1462 455 159 0 0 chr9 114997250 114997319 -9078853 - ID_B1 SINE B4 -4 220 152 1 1462 295 294 92 65 chr9 114997448 114997601 -9078571 - MER20 DNA MER1_type 0 219 63 1 1462 354 291 111 7 chr9 114998708 114998843 -9077329 + B1F2 SINE Alu 1 149 0 1 1462 248 254 108 13 chr9 114999022 114999124 -9077048 - B1_Mm SINE Alu -19 130 11 1 1462 191 325 49 49 chr9 114999142 114999223 -9076949 + MIRc SINE MIR 101 181 -87 1 1462 342 0 0 0 chr9 114999582 114999620 -9076552 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1462 523 256 25 0 chr9 114999634 114999755 -9076417 + B1F SINE Alu 5 128 -21 1 1462 317 24 24 0 chr9 114999759 114999801 -9076371 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1462 201 74 0 0 chr9 114999805 114999832 -9076340 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1 1462 236 65 0 88 chr9 114999932 115000000 -9076172 + (GTGTG)n Simple_repeat Simple_repeat 3 64 0 1 1462 676 85 0 68 chr9 115000012 115000202 -9075970 + (GTGTG)n Simple_repeat Simple_repeat 3 179 0 1 1462 577 99 0 70 chr9 115000246 115000431 -9075741 + (GTGTG)n Simple_repeat Simple_repeat 3 174 0 1 1462 767 81 0 53 chr9 115000467 115000733 -9075439 + (GTGTG)n Simple_repeat Simple_repeat 1 251 0 1 1462 872 145 14 7 chr9 115000875 115001014 -9075158 + B1_Mur2 SINE Alu 3 142 -7 2 1462 1134 212 9 0 chr9 115001024 115001236 -9074936 + B3 SINE B2 2 215 -1 3 1462 458 217 78 9 chr9 115001625 115001741 -9074431 + ID_B1 SINE B4 86 209 -15 4 1462 511 282 60 0 chr9 115001772 115001889 -9074283 + RSINE1 SINE B4 32 155 -10 5 1462 1071 271 80 45 chr9 115001905 115002415 -9073757 - L1MB5 LINE L1 0 6174 5647 6 1462 248 49 0 47 chr9 115002560 115002603 -9073569 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1462 319 171 83 28 chr9 115002862 115002934 -9073238 + PB1 SINE Alu 50 125 -2 8 1462 415 159 0 0 chr9 115002873 115002936 -9073236 + ID_B1 SINE B4 161 223 -1 9 1462 465 252 48 41 chr9 115002945 115003090 -9073082 + B1F SINE Alu 1 146 -3 1 1462 492 152 40 0 chr9 115003636 115003735 -9072437 + URR1A DNA MER1_type 81 183 -43 1 1462 26 0 0 0 chr9 115004130 115004156 -9072016 + AT_rich Low_complexity Low_complexity 1 26 0 1 1462 274 246 0 17 chr9 115004156 115004214 -9071958 + polypyrimidine Low_complexity Low_complexity 2 58 0 1 1462 315 0 0 0 chr9 115004225 115004260 -9071912 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1462 432 260 47 31 chr9 115004269 115004396 -9071776 - RSINE1 SINE B4 -35 130 2 1 1462 378 202 11 102 chr9 115004446 115004534 -9071638 - B4 SINE B4 0 292 213 1 1462 728 292 114 19 chr9 115004546 115004808 -9071364 - B4A SINE B4 -2 290 4 1 1462 1207 238 20 30 chr9 115004808 115005102 -9071070 - MTE2a LTR MaLR -21 358 68 1 1462 219 186 23 0 chr9 115005127 115005170 -9071002 - B3A SINE B2 -154 44 1 1 1462 679 280 29 134 chr9 115005170 115005327 -9070845 - B4 SINE B4 -62 230 79 2 1462 240 111 0 0 chr9 115005327 115005363 -9070809 + (TTA)n Simple_repeat Simple_repeat 3 38 0 2 1462 679 280 29 134 chr9 115005363 115005464 -9070708 - B4 SINE B4 -214 78 1 2 1462 407 277 254 18 chr9 115005986 115006210 -9069962 + B4 SINE B4 2 278 -14 2 1462 405 39 0 0 chr9 115006268 115006319 -9069853 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1462 865 213 62 11 chr9 115006584 115006760 -9069412 - B3A SINE B2 0 198 14 2 1462 966 296 113 0 chr9 115006759 115007104 -9069068 + RCHARR1 DNA MER1_type 591 974 0 2 1462 504 195 0 74 chr9 115007591 115007713 -9068459 + PB1D10 SINE Alu 1 113 -4 2 1462 702 266 116 24 chr9 115007921 115008171 -9068001 - B4 SINE B4 -8 284 12 2 1462 639 281 6 18 chr9 115008961 115008975 -9067197 - B3 SINE B2 -54 162 150 2 1462 432 0 0 0 chr9 115008975 115009023 -9067149 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1462 639 281 6 18 chr9 115009023 115009171 -9067001 - B3 SINE B2 -67 149 2 2 1462 570 279 127 81 chr9 115009758 115010105 -9066067 + MTD LTR MaLR 18 380 -39 3 1462 242 95 24 0 chr9 115010205 115010247 -9065925 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1462 21 0 0 0 chr9 115010352 115010373 -9065799 + AT_rich Low_complexity Low_complexity 1 21 0 3 1462 985 280 86 24 chr9 115010798 115011299 -9064873 - L1MA4 LINE L1 -277 6023 5492 3 1462 932 224 242 10 chr9 115011734 115012036 -9064136 - MTEa LTR MaLR -3 376 5 3 1462 327 179 0 0 chr9 115013019 115013086 -9063086 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1462 819 238 46 46 chr9 115013114 115013308 -9062864 - B3 SINE B2 -16 200 7 3 1462 938 191 67 29 chr9 115013392 115013602 -9062570 + ID_B1 SINE B4 1 218 -6 3 1462 520 337 15 35 chr9 115013857 115014060 -9062112 - MIRb SINE MIR -37 231 33 3 1462 360 336 0 0 chr9 115014534 115014650 -9061522 + (TG)n Simple_repeat Simple_repeat 1 116 0 3 1462 1481 63 0 21 chr9 115014653 115014847 -9061325 - B2_Mm2 SINE B2 -3 192 3 4 1462 377 131 360 10 chr9 115014867 115014967 -9061205 - B2_Mm2 SINE B2 -14 181 47 4 1462 1238 81 23 6 chr9 115015015 115015190 -9060982 - B2_Mm1t SINE B2 -14 179 2 4 1462 263 367 0 0 chr9 115015190 115015299 -9060873 + (TG)n Simple_repeat Simple_repeat 1 109 0 4 1462 510 342 26 0 chr9 115015376 115015531 -9060641 - B4A SINE B4 -113 179 21 4 1462 1042 234 28 0 chr9 115015634 115015848 -9060324 - ID_B1 SINE B4 -3 221 2 4 1462 793 237 65 0 chr9 115015965 115016134 -9060038 - B3A SINE B2 -18 180 1 4 1462 194 319 40 40 chr9 115016158 115016233 -9059939 + MIRm SINE MIR 191 265 -11 4 1462 1276 60 12 0 chr9 115017549 115017715 -9058457 + B2_Mm1t SINE B2 12 179 -14 4 1462 430 91 0 5 chr9 115017743 115017808 -9058364 + B2_Mm2 SINE B2 47 109 -107 4 1462 468 0 0 0 chr9 115017823 115017875 -9058297 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 5 1462 192 289 195 109 chr9 115017885 115018095 -9058077 - L2b LINE L2 -15 3360 3133 5 1462 678 192 8 8 chr9 115018201 115018332 -9057840 - B1_Mur2 SINE Alu -5 144 14 5 1462 439 279 12 72 chr9 115018332 115018364 -9057808 - ID_B1 SINE B4 -2 219 67 5 1462 900 265 13 22 chr9 115019249 115019473 -9056699 - ID_B1 SINE B4 -2 222 1 5 1462 916 199 47 36 chr9 115019906 115020099 -9056073 - B3 SINE B2 -2 214 20 5 1462 301 188 0 0 chr9 115020425 115020489 -9055683 - B3 SINE B2 0 216 153 5 1462 492 250 46 0 chr9 115020494 115020602 -9055570 - ID_B1 SINE B4 -110 114 2 5 1462 319 162 100 29 chr9 115020639 115020709 -9055463 - ID4_ SINE ID -2 81 7 5 1462 341 247 111 74 chr9 115020826 115020988 -9055184 - ORR1E LTR MaLR -4 375 208 5 1462 432 0 0 0 chr9 115021057 115021105 -9055067 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1462 438 108 0 0 chr9 115021115 115021180 -9054992 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1462 315 0 0 0 chr9 115021180 115021214 -9054958 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1462 252 0 0 0 chr9 115021291 115021319 -9054853 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1462 349 259 14 0 chr9 115021325 115021382 -9054790 + polypurine Low_complexity Low_complexity 1 57 0 6 1462 817 182 0 13 chr9 115021382 115021532 -9054640 + B1_Mus1 SINE Alu 1 148 0 6 1462 349 259 14 0 chr9 115021532 115021613 -9054559 + GA-rich Low_complexity Low_complexity 58 140 0 6 1462 606 247 131 12 chr9 115021625 115021793 -9054379 - ORR1E LTR MaLR -168 191 4 5 1462 417 283 25 49 chr9 115021878 115022000 -9054172 + PB1D10 SINE Alu 5 117 0 6 1462 324 259 107 67 chr9 115022152 115022187 -9053985 - B2_Mm2 SINE B2 -10 185 149 6 1462 369 0 0 0 chr9 115022187 115022228 -9053944 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1462 498 33 0 0 chr9 115022228 115022287 -9053885 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1462 345 222 152 63 chr9 115022287 115022428 -9053744 - B3A SINE B2 -47 148 1 6 1462 392 250 61 30 chr9 115022451 115022583 -9053589 + B1F SINE Alu 14 149 0 7 1462 545 275 140 68 chr9 115023733 115023998 -9052174 + B4A SINE B4 1 284 -8 7 1462 484 267 0 17 chr9 115024641 115024759 -9051413 - B1F2 SINE Alu -33 116 1 7 1462 975 234 20 5 chr9 115025189 115025391 -9050781 - B3 SINE B2 -11 205 1 7 1462 829 285 51 22 chr9 115025423 115025699 -9050473 + B4A SINE B4 1 284 -8 7 1462 835 197 112 27 chr9 115025977 115026021 -9050151 - B3 SINE B2 -11 205 154 7 1462 195 42 0 0 chr9 115026021 115026045 -9050127 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 7 1462 835 197 112 27 chr9 115026045 115026188 -9049984 - B3 SINE B2 -63 153 4 7 1462 962 239 10 5 chr9 115026818 115027016 -9049156 - ID_B1 SINE B4 -2 222 24 7 1462 264 293 53 0 chr9 115026957 115027032 -9049140 - ID4_ SINE ID -2 81 3 7 1462 465 249 37 67 chr9 115027076 115027264 -9048908 + RSINE1 SINE B4 3 187 -105 8 1462 473 194 54 36 chr9 115027583 115027695 -9048477 + PB1D7 SINE Alu 6 119 -1 8 1462 452 270 20 0 chr9 115027731 115027831 -9048341 + ORR1E LTR MaLR 1 102 -257 8 1462 1245 181 19 0 chr9 115027832 115028048 -9048124 + URR1B DNA MER1_type 6 225 0 8 1462 800 255 114 51 chr9 115028048 115028292 -9047880 + ORR1E LTR MaLR 99 359 0 8 1462 742 259 301 0 chr9 115028854 115029143 -9047029 + MTEb LTR MaLR 1 376 -3 8 1462 1719 214 74 0 chr9 115029322 115029672 -9046500 - RLTR14 LTR ERV1 -6 376 1 8 1462 908 266 33 73 chr9 115030667 115030967 -9045205 + B4 SINE B4 1 288 -4 8 1462 558 0 0 0 chr9 115031001 115031063 -9045109 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1462 230 258 85 53 chr9 115031310 115031404 -9044768 - RMER30 DNA MER1_type 0 202 106 8 1462 555 191 0 0 chr9 115031413 115031560 -9044612 + (TG)n Simple_repeat Simple_repeat 1 147 0 8 1462 1174 239 54 29 chr9 115031570 115031846 -9044326 - B4A SINE B4 0 292 10 9 1462 275 341 0 11 chr9 115031846 115031935 -9044237 - RMER30 DNA MER1_type -108 94 7 8 1462 1082 212 18 36 chr9 115032327 115032547 -9043625 - B3 SINE B2 0 216 1 9 1462 286 290 92 97 chr9 115032667 115032862 -9043310 - B4A SINE B4 -25 267 74 9 1462 839 175 0 24 chr9 115032883 115033213 -9042959 + CT-rich Low_complexity Low_complexity 1 321 0 9 1462 237 242 79 16 chr9 115033218 115033281 -9042891 - ID4 SINE ID -12 71 5 9 1462 332 226 81 61 chr9 115034197 115034296 -9041876 - B4 SINE B4 -3 289 189 9 1462 216 163 0 0 chr9 115034340 115034383 -9041789 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1462 561 213 106 0 chr9 115034390 115034531 -9041641 - ID_B1 SINE B4 -14 210 55 9 1462 297 0 0 0 chr9 115034871 115034904 -9041268 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1462 981 287 10 52 chr9 115034909 115035214 -9040958 - B4A SINE B4 0 292 1 9 1462 276 159 99 28 chr9 115035279 115035350 -9040822 - L1MB7 LINE L1 -10 6174 6099 1 1462 279 0 0 0 chr9 115035352 115035383 -9040789 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1462 342 0 0 0 chr9 115035383 115035420 -9040752 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1462 468 281 58 15 chr9 115035422 115035559 -9040613 - RSINE1 SINE B4 -19 146 4 1 1462 226 304 54 11 chr9 115035559 115035618 -9040554 - PB1D7 SINE Alu -47 73 11 1 1462 213 288 68 0 chr9 115035554 115035627 -9040545 - ID_B1 SINE B4 -67 157 80 1 1462 792 161 189 27 chr9 115035757 115035942 -9040230 - B3 SINE B2 0 216 2 1 1462 560 299 53 13 chr9 115036253 115036455 -9039717 - B3A SINE B2 0 216 8 1 1462 811 112 48 0 chr9 115036802 115036927 -9039245 - ORR1A3 LTR MaLR 0 326 196 1 1462 562 122 0 0 chr9 115036931 115037021 -9039151 - ORR1A3 LTR MaLR -237 90 1 1 1462 364 271 259 68 chr9 115037181 115037404 -9038768 + ORR1C2-int LTR MaLR 601 989 -591 1 1462 995 199 45 104 chr9 115037404 115037871 -9038301 + ORR1C2 LTR MaLR 1 382 -2 1 1462 445 245 20 0 chr9 115037873 115037971 -9038201 + MTE-int LTR MaLR 984 1083 -497 1 1462 759 92 0 0 chr9 115038543 115038652 -9037520 + (TG)n Simple_repeat Simple_repeat 1 109 0 1 1462 499 280 20 40 chr9 115039246 115039395 -9036777 - RSINE1 SINE B4 -10 155 10 1 1462 505 281 31 15 chr9 115039977 115040107 -9036065 + ID_B1 SINE B4 92 223 -1 1 1462 385 296 25 42 chr9 115040113 115040233 -9035939 + RSINE1 SINE B4 1 118 -47 1 1462 186 43 0 0 chr9 115040235 115040258 -9035914 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1462 2465 169 14 5 chr9 115040402 115040819 -9035353 - MTC LTR MaLR 0 421 1 1 1462 392 282 206 19 chr9 115040943 115041268 -9034904 + L1MC4a LINE L1 6986 7371 -511 1 1462 425 245 124 83 chr9 115041758 115041835 -9034337 - RMER30 DNA MER1_type -17 185 115 1 1462 869 159 14 14 chr9 115041835 115041982 -9034190 - B1_Mur3 SINE Alu -1 148 2 1 1462 425 245 124 83 chr9 115041982 115042073 -9034099 - RMER30 DNA MER1_type -88 114 10 1 1462 399 292 9 78 chr9 115042282 115042397 -9033775 - B4A SINE B4 -183 109 3 1 1462 189 74 0 0 chr9 115042814 115042841 -9033331 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 1462 303 28 0 0 chr9 115042852 115042888 -9033284 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1462 290 259 12 24 chr9 115043073 115043156 -9033016 - ID4 SINE ID 0 83 2 1 1462 318 207 35 47 chr9 115043164 115043250 -9032922 - B1F1 SINE Alu -55 94 10 1 1462 745 146 40 15 chr9 115043335 115043665 -9032507 + (TG)n Simple_repeat Simple_repeat 1 338 0 1 1462 633 280 40 0 chr9 115043742 115043892 -9032280 - RSINE1 SINE B4 -7 158 3 1 1462 614 224 75 50 chr9 115044338 115044498 -9031674 - RSINE1 SINE B4 0 165 2 1 1462 798 170 131 55 chr9 115045360 115045559 -9030613 - B3 SINE B2 0 216 3 1 1462 375 23 0 0 chr9 115045561 115045605 -9030567 + HAL1-3A_ME LINE L1 1969 2012 -846 1 1462 548 182 26 13 chr9 115045606 115045762 -9030410 + (CATA)n Simple_repeat Simple_repeat 4 161 0 1 1462 339 85 0 0 chr9 115045763 115045810 -9030362 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1462 542 244 0 45 chr9 115046402 115046535 -9029637 + B1F1 SINE Alu 23 149 0 1 1462 886 264 48 4 chr9 115046547 115046775 -9029397 - MTEa LTR MaLR 0 379 142 1 1462 305 82 0 20 chr9 115046864 115046914 -9029258 + (TCCCC)n Simple_repeat Simple_repeat 1 49 0 1 1462 225 325 95 24 chr9 115046990 115047116 -9029056 + L2a LINE L2 2698 2832 -587 1 1462 785 207 27 65 chr9 115047280 115047424 -9028748 + B3 SINE B2 1 137 -79 1 1462 231 36 0 0 chr9 115047424 115047452 -9028720 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1462 785 207 27 65 chr9 115047452 115047493 -9028679 + B3 SINE B2 138 179 -37 1 1462 345 159 0 0 chr9 115047699 115047762 -9028410 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1462 244 160 0 48 chr9 115047874 115047979 -9028193 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1462 222 164 0 35 chr9 115048039 115048096 -9028076 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1462 332 316 57 98 chr9 115048453 115048769 -9027403 + MTEb LTR MaLR 33 335 -44 1 1462 182 331 119 49 chr9 115049238 115049381 -9026791 + L2a LINE L2 3024 3176 -250 1 1462 244 317 0 0 chr9 115050076 115050136 -9026036 - B4 SINE B4 -2 290 231 1 1462 183 42 0 0 chr9 115050175 115050199 -9025973 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1462 691 300 41 12 chr9 115050325 115050571 -9025601 - RLTR11A2 LTR ERVK -14 513 261 1 1462 615 81 0 0 chr9 115050578 115050664 -9025508 + (TCC)n Simple_repeat Simple_repeat 1 86 0 1 1462 958 156 50 40 chr9 115050671 115050872 -9025300 - RLTR11A2 LTR ERVK -320 207 5 1 1462 397 246 15 0 chr9 115050920 115051054 -9025118 + (TA)n Simple_repeat Simple_repeat 2 137 0 1 1462 345 47 0 0 chr9 115051059 115051102 -9025070 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1462 654 25 0 0 chr9 115051102 115051181 -9024991 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1462 1361 56 6 0 chr9 115051667 115051846 -9024326 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1462 325 284 34 0 chr9 115051938 115052026 -9024146 - B4A SINE B4 -169 123 33 1 1462 221 289 212 13 chr9 115052078 115052229 -9023943 - MIRm SINE MIR -91 185 5 1 1462 535 268 167 6 chr9 115052322 115052502 -9023670 + ORR1E LTR MaLR 98 306 -53 1 1462 211 236 0 35 chr9 115052599 115052656 -9023516 + CT-rich Low_complexity Low_complexity 3 57 0 1 1462 1716 26 0 0 chr9 115052677 115052870 -9023302 - B2_Mm1a SINE B2 0 193 1 1 1462 301 333 19 0 chr9 115055004 115055109 -9021063 + PB1 SINE Alu 10 116 -11 1 1462 223 302 0 19 chr9 115055197 115055243 -9020929 + RSINE1 SINE B4 34 78 -87 1 1462 1596 161 106 26 chr9 115055243 115055582 -9020590 + ORR1D1 LTR MaLR 1 366 -8 1 1462 213 318 14 57 chr9 115055587 115055657 -9020515 + RSINE1 SINE B4 77 143 -22 1 1462 277 309 145 60 chr9 115055863 115055980 -9020192 + B4A SINE B4 162 288 -4 1 1462 28 29 0 0 chr9 115056025 115056060 -9020112 + AT_rich Low_complexity Low_complexity 1 35 0 1 1462 287 120 26 53 chr9 115056076 115056134 -9020038 + (CAAA)n Simple_repeat Simple_repeat 1 54 0 1 1462 1250 48 0 0 chr9 115056134 115056281 -9019891 + B1_Mus2 SINE Alu 1 147 0 1 1462 287 120 26 53 chr9 115056281 115056336 -9019836 + (CAAA)n Simple_repeat Simple_repeat 3 58 0 1 1462 440 248 61 9 chr9 115057506 115057620 -9018552 - PB1D7 SINE Alu 0 120 1 1 1462 557 254 45 52 chr9 115057719 115057873 -9018299 + MTEa LTR MaLR 2 154 -225 1 1462 24793 113 10 16 chr9 115058468 115060260 -9015912 - MURVY-int LTR ERV1 -3583 3869 2098 1 1462 1616 52 0 0 chr9 115060260 115060453 -9015719 + B2_Mm1a SINE B2 1 193 0 1 1462 24793 113 10 16 chr9 115060453 115062507 -9013665 - MURVY-int LTR ERV1 -5355 2097 46 1 1462 3703 115 14 36 chr9 115062507 115063095 -9013077 - RLTR5_Mm LTR ERV1 -53 575 1 1 1462 688 262 97 16 chr9 115063095 115063278 -9012894 + ID_B1 SINE B4 25 222 -2 1 1462 489 288 23 8 chr9 115063954 115064087 -9012085 - B1F SINE Alu -14 135 1 1 1462 515 244 147 7 chr9 115064156 115064292 -9011880 - RSINE1 SINE B4 0 165 11 1 1462 573 127 184 10 chr9 115064304 115064407 -9011765 - B1_Mur4 SINE Alu -28 121 1 1 1462 335 248 0 168 chr9 115064407 115064425 -9011747 - MT2B LTR ERVL -339 228 154 1 1462 1631 164 26 23 chr9 115064452 115064758 -9011414 - RLTR1 LTR ERV1 0 624 318 1 1462 1162 226 107 107 chr9 115065770 115065986 -9010186 - RMER13A LTR ERVK -394 466 222 1 1462 2936 57 29 16 chr9 115065986 115066364 -9009808 + L1_Mus1 LINE L1 6185 6567 0 1 1462 1162 226 107 107 chr9 115066364 115066613 -9009559 - RMER13A LTR ERVK -639 221 1 1 1462 351 152 72 52 chr9 115066797 115066894 -9009278 - HAL1-3A_ME LINE L1 -784 2074 1976 1 1462 404 253 0 22 chr9 115067806 115067895 -9008277 + PB1D10 SINE Alu 10 96 -21 1 1462 328 243 29 0 chr9 115067966 115068036 -9008136 + ID4_ SINE ID 6 77 -6 1 1462 265 245 14 55 chr9 115068068 115068141 -9008031 - B4A SINE B4 -186 106 37 1 1462 226 121 0 83 chr9 115068397 115068469 -9007703 + C-rich Low_complexity Low_complexity 1 66 0 1 1462 965 193 19 37 chr9 115069589 115069804 -9006368 - B3 SINE B2 0 216 6 1 1462 312 131 43 21 chr9 115070041 115070135 -9006037 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1462 384 143 45 29 chr9 115070219 115070472 -9005700 + (CA)n Simple_repeat Simple_repeat 1 257 0 1 1462 474 131 40 20 chr9 115070494 115070642 -9005530 + (CA)n Simple_repeat Simple_repeat 2 152 0 1 1462 259 267 20 10 chr9 115071461 115071563 -9004609 + (TG)n Simple_repeat Simple_repeat 1 103 0 1 1462 494 139 61 29 chr9 115071576 115072022 -9004150 + (TG)n Simple_repeat Simple_repeat 1 460 0 1 1462 669 259 115 7 chr9 115072022 115072170 -9004002 - RSINE1 SINE B4 -1 164 1 1 1462 548 214 36 0 chr9 115072172 115072284 -9003888 - B3 SINE B2 0 216 101 1 1462 561 263 69 23 chr9 115073373 115073548 -9002624 - ID_B1 SINE B4 -37 187 5 1 1462 764 130 7 0 chr9 115073892 115074030 -9002142 + (TG)n Simple_repeat Simple_repeat 2 140 0 1 1462 695 248 0 13 chr9 115074033 115074057 -9002115 - B4A SINE B4 0 292 270 1 1462 974 97 23 0 chr9 115074057 115074232 -9001940 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1462 695 248 0 13 chr9 115074232 115074358 -9001814 - B4A SINE B4 -23 269 144 1 1462 261 0 0 0 chr9 115074485 115074514 -9001658 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1462 744 274 98 63 chr9 115074605 115074920 -9001252 - ORR1E LTR MaLR -6 353 28 1 1462 182 200 0 0 chr9 115075190 115075225 -9000947 - MIRb SINE MIR -47 221 187 1 1462 942 228 47 33 chr9 115075696 115075909 -9000263 - ID_B1 SINE B4 -7 217 2 1 1462 639 290 0 0 chr9 115076571 115076716 -8999456 - B1F SINE Alu 0 149 5 1 1462 607 241 115 24 chr9 115077355 115077562 -8998610 + B3A SINE B2 1 216 0 1 1462 331 299 99 41 chr9 115077574 115077745 -8998427 - B4 SINE B4 -111 181 1 1 1462 286 322 46 0 chr9 115077940 115078027 -8998145 - PB1D10 SINE Alu -7 110 20 1 1462 632 227 133 0 chr9 115077960 115078110 -8998062 - ID_B1 SINE B4 -54 170 1 1 1462 824 268 54 34 chr9 115078762 115079114 -8997058 - RLTR10D LTR ERVK 0 359 1 1 1462 958 235 30 99 chr9 115079569 115079871 -8996301 + B4 SINE B4 9 289 -3 1 1462 329 179 104 0 chr9 115080125 115080191 -8995981 + PB1D10 SINE Alu 19 91 -56 2 1462 201 116 47 0 chr9 115080295 115080338 -8995834 + T-rich Low_complexity Low_complexity 4 48 0 2 1462 1167 62 0 27 chr9 115080469 115080618 -8995554 - B1_Mm SINE Alu -1 146 2 2 1462 265 189 18 36 chr9 115080764 115080819 -8995353 - B4A SINE B4 -211 81 28 2 1462 462 267 64 36 chr9 115081005 115081145 -8995027 + RSINE1 SINE B4 11 154 -11 2 1463 1128 195 20 5 chr9 115081819 115082020 -8994152 - B3 SINE B2 -12 204 1 2 1463 577 301 149 27 chr9 115082025 115082213 -8993959 - ID_B1 SINE B4 -3 221 11 2 1463 567 219 6 11 chr9 115083315 115083495 -8992677 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1463 566 96 39 0 chr9 115083518 115083622 -8992550 + (TC)n Simple_repeat Simple_repeat 1 108 0 2 1463 315 0 0 0 chr9 115083622 115083657 -8992515 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1463 1204 68 43 6 chr9 115084180 115084344 -8991828 + B2_Mm2 SINE B2 2 171 -24 2 1463 558 324 106 22 chr9 115084601 115084828 -8991344 + B4A SINE B4 9 254 -38 2 1463 693 261 0 14 chr9 115086348 115086492 -8989680 + ID_B1 SINE B4 83 224 0 2 1463 398 272 16 48 chr9 115086497 115086646 -8989526 + RSINE1 SINE B4 2 146 -19 2 1463 530 225 85 77 chr9 115086860 115086990 -8989182 - RSINE1 SINE B4 -4 161 31 2 1463 341 239 109 0 chr9 115087293 115087385 -8988787 + RSINE1 SINE B4 30 131 -34 2 1463 708 216 67 45 chr9 115087421 115087600 -8988572 - B3A SINE B2 -15 183 1 2 1463 246 32 0 0 chr9 115087609 115087640 -8988532 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1463 1109 237 24 4 chr9 115088187 115088433 -8987739 + B4A SINE B4 1 251 -41 2 1463 600 221 12 48 chr9 115088669 115088835 -8987337 - RSINE1 SINE B4 -3 162 3 2 1463 315 316 146 7 chr9 115090054 115090191 -8985981 + RSINE1 SINE B4 6 161 -4 2 1463 545 230 109 78 chr9 115090223 115090506 -8985666 + B4A SINE B4 1 292 0 2 1463 314 234 52 17 chr9 115090534 115090708 -8985464 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1463 718 234 63 1 chr9 115091219 115091379 -8984793 + B3A SINE B2 3 170 -46 2 1463 486 0 0 0 chr9 115091379 115091433 -8984739 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1463 611 258 67 57 chr9 115091433 115091482 -8984690 + B3 SINE B2 171 214 -2 2 1463 645 248 30 8 chr9 115091513 115091647 -8984525 - B1_Mur1 SINE Alu -4 145 9 2 1463 755 224 0 0 chr9 115091681 115091815 -8984357 - B1_Mur3 SINE Alu -13 136 3 2 1463 287 170 0 0 chr9 115092517 115092564 -8983608 + RSINE1 SINE B4 2 48 -117 2 1463 798 180 78 0 chr9 115092649 115092777 -8983395 + B1_Mur1 SINE Alu 2 139 -10 2 1463 3112 68 7 15 chr9 115092821 115093224 -8982948 + MTB LTR MaLR 1 400 0 2 1463 308 326 45 34 chr9 115093399 115093488 -8982684 + PB1D7 SINE Alu 18 107 -13 2 1463 279 0 0 0 chr9 115093489 115093520 -8982652 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1463 251 243 56 14 chr9 115093761 115093829 -8982343 + B4A SINE B4 168 238 -54 2 1463 588 231 82 7 chr9 115093829 115093964 -8982208 + B3 SINE B2 2 146 -70 2 1463 252 237 145 21 chr9 115093923 115094018 -8982154 - B3 SINE B2 -101 115 3 2 1463 229 370 0 0 chr9 115094287 115094360 -8981812 - ID4_ SINE ID -2 81 9 2 1463 414 233 112 41 chr9 115094396 115094530 -8981642 + B1F SINE Alu 10 149 0 2 1463 301 319 0 0 chr9 115094536 115094608 -8981564 + ID4 SINE ID 11 82 -1 2 1463 513 229 84 14 chr9 115094736 115094878 -8981294 - ID_B1 SINE B4 -56 168 17 2 1463 229 286 0 0 chr9 115095997 115096046 -8980126 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1463 556 264 50 7 chr9 115096146 115096287 -8979885 - RSINE1 SINE B4 -17 148 2 2 1463 1190 256 10 50 chr9 115096566 115096584 -8979588 - B4 SINE B4 -4 288 271 2 1463 585 28 0 0 chr9 115096584 115096655 -8979517 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1463 1190 256 10 50 chr9 115096655 115096936 -8979236 - B4 SINE B4 -22 270 2 2 1463 221 311 107 25 chr9 115097213 115097335 -8978837 + ID_B1 SINE B4 5 136 -88 2 1463 603 0 0 0 chr9 115097430 115097497 -8978675 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 1463 252 0 0 0 chr9 115097497 115097524 -8978648 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1463 481 284 0 0 chr9 115097554 115097656 -8978516 + RSINE1 SINE B4 4 105 -60 2 1463 909 287 34 44 chr9 115098179 115098474 -8977698 - B4A SINE B4 0 292 1 2 1463 499 269 15 8 chr9 115098558 115098689 -8977483 + ID_B1 SINE B4 72 203 -21 2 1463 707 232 137 9 chr9 115099220 115099518 -8976654 - MTD LTR MaLR 0 419 18 2 1463 449 259 194 7 chr9 115099927 115100071 -8976101 - ID_B1 SINE B4 -52 172 2 2 1463 775 271 11 0 chr9 115100557 115100738 -8975434 + ID_B1 SINE B4 15 197 -27 2 1463 1523 57 15 20 chr9 115100888 115101084 -8975088 + B2_Mm2 SINE B2 1 195 0 2 1463 180 97 0 0 chr9 115101135 115101166 -8975006 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 2 1463 900 131 0 52 chr9 115101167 115101320 -8974852 - B1_Mur1 SINE Alu -4 145 1 2 1463 293 212 111 49 chr9 115101676 115101786 -8974386 + PB1D7 SINE Alu 9 127 0 2 1463 1031 193 39 15 chr9 115102122 115102327 -8973845 - B3 SINE B2 -5 211 2 2 1463 450 0 0 0 chr9 115102371 115102421 -8973751 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1463 436 243 38 19 chr9 115102422 115102527 -8973645 - RSINE1 SINE B4 -32 133 27 2 1463 241 292 40 50 chr9 115103089 115103190 -8972982 - LTR48 LTR ERV1 -631 156 57 2 1463 761 262 142 18 chr9 115103127 115103381 -8972791 - B4A SINE B4 -28 264 1 2 1463 521 128 6 2 chr9 115103521 115103642 -8972530 - B2_Mm2 SINE B2 -71 122 2 2 1463 393 22 0 0 chr9 115103692 115103738 -8972434 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1463 416 245 48 19 chr9 115103739 115103843 -8972329 - RSINE1 SINE B4 -32 133 27 2 1463 226 200 0 0 chr9 115103843 115103883 -8972289 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1463 1145 65 0 7 chr9 115103897 115104037 -8972135 + B1_Mm SINE Alu 1 139 -8 2 1463 954 100 0 0 chr9 115104037 115104177 -8971995 + (GA)n Simple_repeat Simple_repeat 2 141 0 2 1463 469 131 45 100 chr9 115104177 115104287 -8971885 - B3A SINE B2 -94 104 1 2 1463 742 290 28 139 chr9 115104835 115105159 -8971013 + B4A SINE B4 1 288 -4 2 1463 585 159 37 0 chr9 115105203 115105366 -8970806 + (CA)n Simple_repeat Simple_repeat 1 169 0 2 1463 440 181 42 0 chr9 115105379 115105545 -8970627 + (CA)n Simple_repeat Simple_repeat 2 174 0 2 1463 225 215 123 25 chr9 115105549 115105630 -8970542 - MLT1H-int LTR MaLR -891 518 430 2 1463 604 187 9 18 chr9 115105623 115105732 -8970440 + B1F SINE Alu 40 147 -2 2 1463 220 196 17 35 chr9 115105732 115105790 -8970382 + GA-rich Low_complexity Low_complexity 1 57 0 2 1463 1429 128 9 14 chr9 115107651 115107873 -8968299 + URR1B DNA MER1_type 5 225 0 2 1463 466 304 44 7 chr9 115107995 115108131 -8968041 - RSINE1 SINE B4 -22 143 3 2 1463 669 240 11 3 chr9 115108147 115108537 -8967635 + (TG)n Simple_repeat Simple_repeat 1 393 0 2 1463 331 250 0 0 chr9 115108613 115108673 -8967499 + ID4_ SINE ID 14 73 -10 2 1463 303 287 10 96 chr9 115108673 115108717 -8967455 + ID_B1 SINE B4 14 108 -116 2 1463 351 0 0 0 chr9 115108735 115108774 -8967398 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1463 225 0 0 0 chr9 115109979 115110004 -8966168 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1463 387 287 101 10 chr9 115110428 115110553 -8965619 + ID_B1 SINE B4 65 195 -29 2 1463 219 69 0 0 chr9 115111230 115111259 -8964913 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1463 1186 250 14 27 chr9 115111339 115111537 -8964635 - B4 SINE B4 -4 288 89 2 1463 1756 10 0 0 chr9 115111537 115111729 -8964443 - B2_Mm1a SINE B2 -1 192 1 2 1463 1186 250 14 27 chr9 115111729 115111822 -8964350 - B4 SINE B4 -204 88 1 2 1463 519 17 0 0 chr9 115111904 115111964 -8964208 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1463 396 0 0 0 chr9 115111964 115112007 -8964165 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1463 269 268 36 0 chr9 115112014 115112070 -8964102 - B3A SINE B2 -27 171 114 2 1463 496 312 84 28 chr9 115112021 115112199 -8963973 - B4A SINE B4 0 292 105 2 1463 511 261 225 11 chr9 115112253 115112431 -8963741 - ID_B1 SINE B4 -8 216 1 2 1463 1032 264 5 0 chr9 115113017 115113233 -8962939 - ID_B1 SINE B4 -4 220 4 2 1463 519 160 0 0 chr9 115113571 115113665 -8962507 + GA-rich Low_complexity Low_complexity 1 94 0 2 1463 562 240 0 0 chr9 115113665 115113769 -8962403 - PB1D7 SINE Alu -12 108 5 2 1463 414 0 0 0 chr9 115114640 115114686 -8961486 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1463 229 51 0 49 chr9 115115029 115115070 -8961102 + (CACCC)n Simple_repeat Simple_repeat 1 39 0 2 1463 381 245 43 0 chr9 115115998 115116092 -8960080 + RMER30 DNA MER1_type 11 108 -94 2 1463 607 291 0 28 chr9 115116104 115116249 -8959923 + RSINE1 SINE B4 3 143 -22 2 1463 201 39 0 0 chr9 115116254 115116280 -8959892 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1463 463 230 11 53 chr9 115117072 115117319 -8958853 + (CATA)n Simple_repeat Simple_repeat 1 236 0 2 1463 259 255 21 31 chr9 115117275 115117372 -8958800 + (CA)n Simple_repeat Simple_repeat 1 96 0 2 1463 185 187 0 51 chr9 115117382 115117461 -8958711 + (CATA)n Simple_repeat Simple_repeat 4 78 0 2 1463 381 241 88 18 chr9 115117605 115117719 -8958453 - B1F SINE Alu -26 123 2 3 1463 263 284 0 0 chr9 115117720 115117787 -8958385 + T-rich Low_complexity Low_complexity 1 67 0 3 1463 3145 12 3 0 chr9 115117797 115118142 -8958030 - ORR1A0 LTR MaLR 0 346 1 3 1463 521 292 22 29 chr9 115118929 115119126 -8957046 - ID_B1 SINE B4 -18 274 85 3 1463 22 35 0 0 chr9 115119135 115119164 -8957008 + AT_rich Low_complexity Low_complexity 1 29 0 3 1463 1569 16 49 0 chr9 115119173 115119356 -8956816 + B2_Mm1a SINE B2 2 193 0 3 1463 908 242 5 30 chr9 115119365 115119565 -8956607 - ID_B1 SINE B4 -13 211 17 3 1463 368 255 113 0 chr9 115119906 115120012 -8956160 + MER112 DNA MER1_type 2 119 -142 3 1463 378 42 0 0 chr9 115120527 115120575 -8955597 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1463 237 196 0 0 chr9 115120587 115120643 -8955529 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1463 699 228 70 29 chr9 115120643 115120815 -8955357 + B4 SINE B4 102 280 -12 3 1463 254 281 60 97 chr9 115120807 115120941 -8955231 - RMER12 LTR ERVK -476 846 718 3 1463 404 295 195 26 chr9 115121801 115121996 -8954176 + MTE2a LTR MaLR 1 228 -151 3 1463 1066 257 88 91 chr9 115122075 115122439 -8953733 - MTEa LTR MaLR -16 363 1 3 1463 590 240 95 22 chr9 115123078 115123257 -8952915 + B3A SINE B2 2 193 -5 3 1463 226 303 132 22 chr9 115123752 115123843 -8952329 - RSINE1 SINE B4 -45 120 20 3 1463 189 0 0 0 chr9 115123857 115123878 -8952294 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1463 512 268 79 0 chr9 115124862 115124989 -8951183 + RSINE1 SINE B4 12 148 -17 3 1463 189 225 34 0 chr9 115126835 115126924 -8949248 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 1463 626 222 8 8 chr9 115126962 115127089 -8949083 - RSINE1 SINE B4 -37 128 2 3 1463 209 296 52 69 chr9 115127110 115127226 -8948946 - L2b LINE L2 -24 3351 3238 3 1463 234 0 0 0 chr9 115127634 115127660 -8948512 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1463 378 0 0 0 chr9 115127660 115127701 -8948471 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1463 1624 157 84 35 chr9 115127800 115128143 -8948029 - ORR1D1 LTR MaLR 0 374 15 3 1463 452 216 0 121 chr9 115128154 115128174 -8947998 + MT2B LTR ERVL 149 152 -449 3 1463 931 156 7 20 chr9 115128174 115128324 -8947848 + B1_Mus1 SINE Alu 1 148 0 3 1463 516 248 28 9 chr9 115128427 115128533 -8947639 - RSINE1 SINE B4 -10 155 48 3 1463 225 94 0 0 chr9 115128814 115128846 -8947326 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1463 229 302 203 53 chr9 115128860 115128993 -8947179 - RSINE1 SINE B4 -10 155 3 3 1463 390 221 129 65 chr9 115129958 115130113 -8946059 + RSINE1 SINE B4 1 165 0 3 1463 256 191 162 0 chr9 115130247 115130315 -8945857 - B1F1 SINE Alu 0 149 71 3 1463 941 286 92 45 chr9 115130660 115131019 -8945153 - MTE2b LTR MaLR 0 379 4 3 1463 341 173 105 88 chr9 115131204 115131318 -8944854 - PB1D7 SINE Alu 0 120 5 3 1463 207 316 0 0 chr9 115132619 115132698 -8943474 + (CCCTG)n Simple_repeat Simple_repeat 4 82 0 3 1463 474 289 79 2 chr9 115132934 115133095 -8943077 + ID_B1 SINE B4 56 224 0 3 1463 1212 68 0 0 chr9 115133145 115133293 -8942879 + B1_Mus1 SINE Alu 1 148 0 3 1463 315 278 126 8 chr9 115133309 115133436 -8942736 + B1F2 SINE Alu 1 142 -7 3 1463 236 226 159 16 chr9 115133442 115133505 -8942667 + ID4_ SINE ID 2 73 -10 3 1463 27 0 0 0 chr9 115133514 115133541 -8942631 + AT_rich Low_complexity Low_complexity 1 27 0 3 1463 1141 68 0 33 chr9 115133544 115133695 -8942477 + B1_Mm SINE Alu 2 147 0 3 1463 567 0 0 0 chr9 115134107 115134170 -8942002 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1463 718 265 41 56 chr9 115134408 115134604 -8941568 + B3A SINE B2 2 194 -4 3 1463 464 274 14 49 chr9 115134756 115134898 -8941274 - RSINE1 SINE B4 -4 161 25 3 1463 491 209 61 38 chr9 115135120 115135247 -8940925 - PB1D10 SINE Alu -22 127 2 3 1463 228 167 18 53 chr9 115135488 115135531 -8940641 + polypyrimidine Low_complexity Low_complexity 16 58 0 3 1463 381 281 0 9 chr9 115135531 115135646 -8940526 - PB1D9 SINE Alu -6 114 1 3 1463 228 167 18 53 chr9 115135646 115135659 -8940513 + polypyrimidine Low_complexity Low_complexity 4 15 0 3 1463 295 202 124 80 chr9 115136532 115136645 -8939527 - RLTR13D3 LTR ERVK 0 1114 997 3 1463 278 275 117 46 chr9 115137256 115137417 -8938755 - RLTR13D3 LTR ERVK -861 162 1 3 1463 401 292 151 0 chr9 115137652 115137758 -8938414 - RSINE1 SINE B4 -2 163 42 3 1463 300 255 67 67 chr9 115138046 115138151 -8938021 + PB1D10 SINE Alu 7 111 -6 3 1463 239 252 86 93 chr9 115138552 115138692 -8937480 + MIR SINE MIR 90 228 -34 3 1463 682 233 60 73 chr9 115139603 115139844 -8936328 - MTE2a LTR MaLR -3 376 134 3 1463 237 247 37 99 chr9 115140013 115140094 -8936078 + PB1D7 SINE Alu 13 88 -61 3 1463 279 0 0 0 chr9 115140542 115140573 -8935599 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1463 525 288 69 43 chr9 115142401 115142594 -8933578 - B3A SINE B2 -1 194 2 3 1463 715 273 184 58 chr9 115142752 115143444 -8932728 + L1M3 LINE L1 3376 4154 -1986 3 1463 831 212 45 0 chr9 115143769 115143948 -8932224 + B3A SINE B2 1 187 -11 3 1463 319 339 25 34 chr9 115144890 115145009 -8931163 - B4A SINE B4 -173 119 2 3 1463 817 97 2 0 chr9 115146594 115146712 -8929460 - B1_Mus2 SINE Alu 0 120 1 3 1463 510 221 8 34 chr9 115146609 115146726 -8929446 - ID_B1 SINE B4 -41 183 70 3 1463 261 265 217 38 chr9 115146886 115146992 -8929180 + RSINE1 SINE B4 4 128 -37 3 1463 2517 247 73 49 chr9 115146995 115147724 -8928448 - MTC-int LTR MaLR -176 1082 245 3 1463 1211 96 73 0 chr9 115147724 115147902 -8928270 - B2_Mm2 SINE B2 -4 191 1 3 1463 1123 301 94 111 chr9 115147902 115148139 -8928033 - MTC-int LTR MaLR -854 244 11 3 1463 901 238 245 0 chr9 115148159 115148445 -8927727 - MTD LTR MaLR -59 360 5 3 1463 232 302 78 59 chr9 115148452 115148554 -8927618 + MT2B2 LTR ERVL 152 255 -329 3 1463 360 247 86 0 chr9 115148470 115148563 -8927609 + PB1D10 SINE Alu 8 108 -9 3 1463 461 198 123 49 chr9 115148935 115149057 -8927115 - ID_B1 SINE B4 -5 219 89 3 1463 720 311 17 0 chr9 115149092 115149269 -8926903 - B3A SINE B2 -18 180 1 3 1463 31 58 0 14 chr9 115149447 115149489 -8926683 + AT_rich Low_complexity Low_complexity 1 42 0 3 1463 476 280 53 7 chr9 115149489 115149640 -8926532 - RSINE1 SINE B4 -4 161 4 3 1463 31 58 0 14 chr9 115149640 115149667 -8926505 + AT_rich Low_complexity Low_complexity 1 27 0 3 1463 415 287 211 18 chr9 115150565 115150792 -8925380 - B4A SINE B4 -21 271 1 3 1463 229 196 19 38 chr9 115153472 115153525 -8922647 + MIRb SINE MIR 117 168 -100 3 1463 760 231 165 71 chr9 115153673 115153939 -8922233 - B4A SINE B4 0 292 2 3 1463 217 250 42 0 chr9 115154113 115154161 -8922011 + RSINE1 SINE B4 81 130 -35 3 1463 263 333 45 0 chr9 115154242 115154308 -8921864 + B1F2 SINE Alu 31 99 -50 3 1463 456 250 0 0 chr9 115155640 115155816 -8920356 + GA-rich Low_complexity Low_complexity 4 179 0 3 1463 308 306 114 34 chr9 115155831 115155980 -8920192 + HAL1-3A_ME LINE L1 2284 2444 -414 3 1463 217 206 0 0 chr9 115157431 115157465 -8918707 + PB1D9 SINE Alu 1 34 -86 3 1463 347 291 45 18 chr9 115161257 115161369 -8914803 - MER5A DNA MER1_type -40 149 35 3 1463 253 340 109 9 chr9 115165380 115165490 -8910682 - PB1 SINE Alu -6 121 1 3 1463 880 255 73 20 chr9 115165491 115165695 -8910477 + B3 SINE B2 1 215 -1 3 1463 392 312 50 31 chr9 115165760 115165919 -8910253 - RSINE1 SINE B4 -1 164 3 3 1463 1628 181 62 16 chr9 115167015 115167402 -8908770 + MTD LTR MaLR 1 405 -14 3 1463 203 88 0 29 chr9 115168991 115169026 -8907146 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 3 1463 1638 47 0 0 chr9 115169441 115169633 -8906539 + B2_Mm1t SINE B2 1 192 -1 3 1463 239 261 43 0 chr9 115169774 115169843 -8906329 + ID4 SINE ID 2 73 -10 3 1463 1176 41 7 7 chr9 115171980 115172126 -8904046 + B1_Mm SINE Alu 2 147 0 3 1463 351 127 0 0 chr9 115172126 115172189 -8903983 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 3 1463 687 25 0 0 chr9 115172191 115172272 -8903900 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 3 1463 802 159 63 82 chr9 115172367 115172573 -8903599 + B3 SINE B2 14 215 -1 3 1463 1665 26 5 0 chr9 115172672 115172864 -8903308 + B2_Mm1t SINE B2 1 193 0 3 1463 456 172 34 11 chr9 115172928 115173016 -8903156 - PB1D9 SINE Alu -11 109 20 3 1463 219 233 93 27 chr9 115172954 115173029 -8903143 - B4A SINE B4 -127 165 86 3 1463 377 277 50 8 chr9 115173228 115173348 -8902824 - B1F SINE Alu -10 139 15 3 1463 261 315 96 0 chr9 115174269 115174342 -8901830 - PB1D10 SINE Alu -37 80 1 3 1463 839 132 249 35 chr9 115174473 115174646 -8901526 - B3 SINE B2 -6 210 1 3 1463 203 79 26 0 chr9 115175037 115175075 -8901097 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1463 574 58 11 11 chr9 115175781 115175869 -8900303 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1463 1526 78 0 0 chr9 115175919 115176111 -8900061 + B2_Mm1a SINE B2 2 193 0 4 1463 612 0 0 0 chr9 115176325 115176393 -8899779 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1463 207 0 0 0 chr9 115176393 115176416 -8899756 + (CAGG)n Simple_repeat Simple_repeat 3 25 0 4 1463 423 0 0 0 chr9 115177844 115177891 -8898281 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1463 590 156 9 0 chr9 115178323 115178432 -8897740 + B1_Mur4 SINE Alu 24 133 -17 4 1463 189 0 0 0 chr9 115178753 115178774 -8897398 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1463 807 161 0 16 chr9 115178808 115178991 -8897181 + GA-rich Low_complexity Low_complexity 1 180 0 4 1463 238 283 121 0 chr9 115179113 115179150 -8897022 + B1F1 SINE Alu 2 77 -40 4 1463 242 235 0 0 chr9 115179150 115179201 -8896971 + ID_B1 SINE B4 156 206 -18 4 1463 238 283 121 0 chr9 115179201 115179218 -8896954 + B1F1 SINE Alu 78 117 0 4 1463 207 255 20 0 chr9 115179227 115179278 -8896894 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1463 512 266 166 20 chr9 115179718 115179940 -8896232 + L1MB7 LINE L1 3224 3495 -2651 4 1463 1133 103 21 36 chr9 115179940 115180132 -8896040 + B2_Mm2 SINE B2 1 189 -6 4 1463 512 270 171 20 chr9 115180132 115180442 -8895730 + L1MB7 LINE L1 3492 3840 -2306 4 1463 337 246 0 0 chr9 115180500 115180569 -8895603 + MER20 DNA MER1_type 17 85 -134 4 1463 229 321 68 59 chr9 115180860 115181082 -8895090 + L1MB7 LINE L1 4098 4321 -1825 4 1463 1311 65 0 26 chr9 115181120 115181311 -8894861 + MTA_Mm LTR MaLR 211 396 0 4 1463 7544 35 4 0 chr9 115181311 115182300 -8893872 + MTA_Mm-int LTR MaLR 1 993 -105 4 1463 405 235 20 10 chr9 115182314 115182413 -8893759 + L1MB7 LINE L1 4696 4795 -1351 4 1463 1064 159 10 19 chr9 115182538 115182743 -8893429 + Lx2 LINE L1 6795 6997 0 4 1463 432 0 0 0 chr9 115182817 115182865 -8893307 + (TTA)n Simple_repeat Simple_repeat 2 49 0 4 1463 1124 89 0 0 chr9 115182869 115183015 -8893157 - B1_Mus1 SINE Alu -1 147 2 4 1463 403 283 129 4 chr9 115183017 115183396 -8892776 + L1MB7 LINE L1 5025 5461 -719 4 1463 233 275 53 32 chr9 115183426 115183520 -8892652 + PB1D10 SINE Alu 1 96 -21 4 1463 293 300 0 0 chr9 115183889 115183979 -8892193 + L1MB7 LINE L1 5866 5955 -229 4 1463 313 349 32 38 chr9 115183997 115184155 -8892017 + RSINE1 SINE B4 3 159 -6 4 1463 33 25 0 0 chr9 115184359 115184399 -8891773 + AT_rich Low_complexity Low_complexity 1 40 0 4 1463 230 241 92 48 chr9 115184487 115184600 -8891572 + B1F2 SINE Alu 1 112 -8 4 1463 503 140 21 21 chr9 115185472 115185567 -8890605 - PB1D9 SINE Alu 0 120 26 4 1463 37 0 0 0 chr9 115186347 115186384 -8889788 + AT_rich Low_complexity Low_complexity 1 37 0 4 1463 1624 36 0 20 chr9 115186449 115186646 -8889526 - B2_Mm1a SINE B2 0 193 1 4 1463 560 248 66 27 chr9 115187562 115187768 -8888404 + B3 SINE B2 1 195 0 4 1463 560 279 18 47 chr9 115188226 115188395 -8887777 + B4 SINE B4 129 292 0 4 1463 453 235 0 10 chr9 115188604 115188703 -8887469 + PB1D7 SINE Alu 1 98 -22 4 1463 207 0 0 0 chr9 115188940 115188963 -8887209 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 1463 216 97 0 0 chr9 115190031 115190062 -8886110 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 4 1463 288 0 0 0 chr9 115190066 115190098 -8886074 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 4 1463 290 26 26 0 chr9 115190966 115191005 -8885167 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 4 1463 319 290 80 0 chr9 115193150 115193250 -8882922 - RSINE1 SINE B4 -46 119 12 4 1463 466 286 128 28 chr9 115193285 115193465 -8882707 - B3A SINE B2 0 198 1 4 1463 197 33 33 0 chr9 115193520 115193550 -8882622 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1463 281 234 0 0 chr9 115193803 115193867 -8882305 - B1F1 SINE Alu 0 149 86 4 1463 329 333 90 5 chr9 115193887 115194110 -8882062 - L1M5 LINE L1 -1487 4659 4418 4 1463 310 101 29 0 chr9 115194495 115194564 -8881608 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 4 1463 256 238 31 16 chr9 115195222 115195286 -8880886 - ID4 SINE ID -11 72 8 4 1463 590 267 30 0 chr9 115195628 115195763 -8880409 - B1_Mur1 SINE Alu -10 139 1 4 1463 21 0 0 0 chr9 115195854 115195875 -8880297 + AT_rich Low_complexity Low_complexity 1 21 0 4 1463 235 281 55 11 chr9 115196174 115196277 -8879895 + PB1D10 SINE Alu 2 116 -4 4 1463 803 244 222 0 chr9 115196885 115197151 -8879021 - MTD LTR MaLR -18 401 77 4 1463 202 286 172 10 chr9 115197316 115197415 -8878757 - MIR SINE MIR -128 134 20 4 1463 242 291 0 0 chr9 115197443 115197498 -8878674 + (TGG)n Simple_repeat Simple_repeat 3 57 0 4 1463 485 250 54 17 chr9 115197798 115197943 -8878229 + B3 SINE B2 1 147 -48 4 1463 405 0 0 0 chr9 115197943 115197988 -8878184 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1463 424 257 80 69 chr9 115197988 115198030 -8878142 + B2_Mm2 SINE B2 148 190 -5 4 1463 744 175 7 0 chr9 115198057 115198200 -8877972 + B1_Mur2 SINE Alu 6 149 0 4 1463 247 288 0 0 chr9 115198936 115199016 -8877156 + GA-rich Low_complexity Low_complexity 3 82 0 4 1463 1190 35 0 14 chr9 115199038 115199175 -8876997 + B1_Mus2 SINE Alu 2 138 -9 4 1463 219 36 0 0 chr9 115199175 115199203 -8876969 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 4 1463 426 20 0 0 chr9 115199830 115199881 -8876291 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1463 320 236 48 102 chr9 115201701 115201868 -8874304 - MLT1E2 LTR MaLR -80 574 371 4 1463 722 197 116 43 chr9 115201993 115202200 -8873972 - ID_B1 SINE B4 0 224 3 4 1463 276 53 0 0 chr9 115202568 115202606 -8873566 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1463 319 308 0 118 chr9 115202606 115202742 -8873430 + RSINE1 SINE B4 44 163 -2 4 1463 399 89 0 0 chr9 115202757 115202813 -8873359 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 1463 1061 52 0 36 chr9 115202822 115202961 -8873211 + B1_Mus2 SINE Alu 1 134 -13 4 1463 248 0 31 0 chr9 115202961 115202993 -8873179 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 4 1463 391 221 52 26 chr9 115203909 115204025 -8872147 - PB1D7 SINE Alu -1 119 1 4 1463 336 250 65 111 chr9 115204216 115204369 -8871803 - B1_Mur1 SINE Alu -1 148 3 4 1463 782 92 160 0 chr9 115205350 115205469 -8870703 + B1_Mus1 SINE Alu 1 138 -10 4 1463 293 250 155 0 chr9 115205561 115205645 -8870527 + PB1D10 SINE Alu 12 108 -9 4 1463 226 261 43 0 chr9 115205877 115205946 -8870226 + MLT1G1 LTR MaLR 232 303 -276 4 1463 260 283 26 78 chr9 115206255 115206370 -8869802 + B3A SINE B2 88 196 -2 4 1463 918 170 60 16 chr9 115209546 115209731 -8866441 - URR1B DNA MER1_type 0 225 33 4 1463 357 278 196 42 chr9 115209812 115210026 -8866146 + B4A SINE B4 43 289 -3 4 1463 357 275 7 111 chr9 115210070 115210205 -8865967 + B1F SINE Alu 29 149 0 4 1463 892 251 157 42 chr9 115210483 115211075 -8865097 + RMER1A Other Other 1 448 -582 4 1463 526 202 40 0 chr9 115211354 115211453 -8864719 + B3 SINE B2 2 104 -112 4 1464 671 153 61 8 chr9 115213284 115213426 -8862746 + B1_Mur3 SINE Alu 10 147 0 4 1464 1311 20 0 0 chr9 115214683 115214830 -8861342 + B1_Mm SINE Alu 1 147 0 4 1464 198 128 0 0 chr9 115214830 115214869 -8861303 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1464 264 272 98 0 chr9 115214869 115214961 -8861211 + L1ME2z LINE L1 6319 6419 -25 4 1464 210 105 0 0 chr9 115218004 115218042 -8858130 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1464 27 0 0 0 chr9 115218765 115218792 -8857380 + GC_rich Low_complexity Low_complexity 1 27 0 4 1464 22 56 0 0 chr9 115219011 115219047 -8857125 + GC_rich Low_complexity Low_complexity 1 36 0 4 1464 246 182 0 0 chr9 115219255 115219321 -8856851 + GA-rich Low_complexity Low_complexity 2 67 0 4 1464 207 0 0 0 chr9 115220262 115220285 -8855887 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1464 824 172 171 5 chr9 115221325 115221512 -8854660 + URR1B DNA MER1_type 8 225 0 4 1464 346 295 31 21 chr9 115221512 115221603 -8854569 - B4A SINE B4 -165 127 36 4 1464 180 307 48 38 chr9 115222730 115222835 -8853337 + MIR SINE MIR 155 260 -2 4 1464 295 348 71 77 chr9 115223020 115223216 -8852956 + MLT1F1 LTR MaLR 261 455 -114 4 1464 1144 89 7 0 chr9 115223217 115223363 -8852809 + B1_Mus2 SINE Alu 1 147 0 4 1464 236 91 0 22 chr9 115223363 115223408 -8852764 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 1464 379 265 20 153 chr9 115223704 115223900 -8852272 + L1M2 LINE L1 5325 5494 -806 4 1464 262 265 0 81 chr9 115224599 115224673 -8851499 - ORR1E LTR MaLR -283 76 9 4 1464 2123 79 6 99 chr9 115224941 115225293 -8850879 - ORR1A2 LTR MaLR -8 319 1 4 1464 781 253 53 21 chr9 115225724 115225914 -8850258 - MTE2a LTR MaLR 0 379 184 4 1464 200 194 0 0 chr9 115225957 115225993 -8850179 + GA-rich Low_complexity Low_complexity 6 41 0 4 1464 598 248 95 76 chr9 115225993 115226203 -8849969 - MTE2a LTR MaLR -163 216 3 4 1464 2700 275 63 30 chr9 115226359 115226805 -8849367 + RCHARR1 DNA MER1_type 1 477 -497 4 1464 1205 111 28 0 chr9 115226805 115226986 -8849186 - B2_Mm2 SINE B2 -9 186 1 4 1464 2700 275 63 30 chr9 115226986 115227314 -8848858 + RCHARR1 DNA MER1_type 478 801 -173 4 1464 623 240 16 0 chr9 115227383 115227504 -8848668 - B3A SINE B2 -65 133 11 4 1464 619 28 321 45 chr9 115227515 115227627 -8848545 - B2_Mm2 SINE B2 -6 189 47 4 1464 1236 103 23 0 chr9 115227656 115227830 -8848342 - B2_Mm1t SINE B2 -15 178 1 4 1464 30 0 0 0 chr9 115227838 115227868 -8848304 + AT_rich Low_complexity Low_complexity 1 30 0 4 1464 720 247 23 6 chr9 115227883 115228058 -8848114 - B3A SINE B2 -16 182 5 4 1464 453 179 34 17 chr9 115228061 115228180 -8847992 + RCHARR1 DNA MER1_type 785 905 -69 4 1464 1290 208 58 42 chr9 115228183 115228494 -8847678 - MTEa LTR MaLR -3 376 61 4 1464 306 0 0 0 chr9 115228505 115228539 -8847633 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1464 432 307 64 23 chr9 115228969 115229157 -8847015 + LTR33B LTR ERVL 329 520 0 4 1464 267 31 0 0 chr9 115229284 115229316 -8846856 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1464 243 0 0 0 chr9 115229316 115229343 -8846829 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1464 288 0 0 0 chr9 115229605 115229637 -8846535 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1464 424 325 73 0 chr9 115229777 115229928 -8846244 - MER58A DNA MER1_type 0 224 63 5 1464 450 291 46 46 chr9 115229935 115230160 -8846012 + ORR1E LTR MaLR 1 226 -133 5 1464 780 248 198 10 chr9 115230160 115230458 -8845714 - ORR1E LTR MaLR -3 356 3 5 1464 450 291 46 46 chr9 115230458 115230470 -8845702 + ORR1E LTR MaLR 227 238 -121 5 1464 22 35 0 0 chr9 115230728 115230757 -8845415 + AT_rich Low_complexity Low_complexity 1 29 0 5 1464 361 305 149 71 chr9 115230795 115231008 -8845164 - L1MC4a LINE L1 -1834 6048 5800 5 1464 2276 153 47 15 chr9 115231008 115231413 -8844759 + MTC LTR MaLR 1 418 -3 5 1464 441 272 252 36 chr9 115231413 115231764 -8844408 - L1MC4a LINE L1 -2083 5799 5392 5 1464 1342 132 11 116 chr9 115232241 115232525 -8843647 + Lx4A LINE L1 6804 7057 -1 5 1464 417 323 90 93 chr9 115232764 115233054 -8843118 - B4A SINE B4 0 292 4 5 1464 461 290 76 8 chr9 115234094 115234226 -8841946 - RSINE1 SINE B4 -13 152 12 5 1464 623 173 0 19 chr9 115234933 115235092 -8841080 + GA-rich Low_complexity Low_complexity 3 158 0 5 1464 255 221 49 61 chr9 115235825 115235838 -8840334 - B3A SINE B2 -113 85 5 5 1464 299 206 87 14 chr9 115235838 115235907 -8840265 - B4A SINE B4 -214 78 5 5 1464 362 233 325 70 chr9 115236323 115236480 -8839692 - B3A SINE B2 0 198 2 5 1464 1298 236 59 59 chr9 115236512 115236552 -8839620 - MT2B LTR ERVL 0 601 561 5 1464 423 0 0 0 chr9 115236552 115236599 -8839573 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1464 1298 206 80 101 chr9 115236599 115237024 -8839148 - MT2B LTR ERVL -41 560 3 5 1464 302 75 44 15 chr9 115237108 115237176 -8838996 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 1464 878 76 0 25 chr9 115237180 115237302 -8838870 + B1_Mus1 SINE Alu 1 119 -29 5 1464 2068 42 0 121 chr9 115237302 115237625 -8838547 - RLTR10B LTR ERVK 0 292 9 5 1464 341 45 0 0 chr9 115237641 115237685 -8838487 - RLTR10B LTR ERVK -248 44 1 5 1464 261 75 0 0 chr9 115237685 115237720 -8838452 + B1_Mm SINE Alu 113 147 0 5 1464 326 132 58 35 chr9 115237720 115237892 -8838280 + (TAAA)n Simple_repeat Simple_repeat 2 177 0 5 1464 705 249 104 43 chr9 115237914 115238189 -8837983 - ORR1D2 LTR MaLR -70 308 27 5 1464 198 0 0 0 chr9 115238189 115238211 -8837961 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1464 382 277 69 43 chr9 115238352 115238524 -8837648 - MLT1H LTR MaLR -13 566 389 5 1464 761 256 14 46 chr9 115238617 115238834 -8837338 - B3 SINE B2 -6 210 1 5 1464 2622 153 33 15 chr9 115238866 115239323 -8836849 + RMER4A LTR ERVK 1 465 -1 5 1464 213 139 0 0 chr9 115240260 115240303 -8835869 + (T)n Simple_repeat Simple_repeat 1 43 0 5 1464 1034 212 35 20 chr9 115240667 115240869 -8835303 + ID_B1 SINE B4 7 211 -13 5 1464 656 274 6 13 chr9 115241039 115241198 -8834974 + RSINE1 SINE B4 6 163 -2 5 1464 208 155 26 66 chr9 115241859 115241935 -8834237 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 5 1464 2531 283 88 57 chr9 115242076 115243020 -8833152 + RCHARR1 DNA MER1_type 1 973 -1 5 1464 441 313 107 18 chr9 115243245 115243414 -8832758 + B3A SINE B2 14 197 -1 5 1464 252 220 0 0 chr9 115243620 115243670 -8832502 + (TCG)n Simple_repeat Simple_repeat 3 52 0 5 1464 210 128 0 0 chr9 115243672 115243711 -8832461 + (CAT)n Simple_repeat Simple_repeat 3 41 0 5 1464 623 225 56 51 chr9 115243799 115243996 -8832176 - B3A SINE B2 0 198 1 5 1464 411 83 0 0 chr9 115244262 115244322 -8831850 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1464 535 301 0 13 chr9 115244465 115244620 -8831552 + RSINE1 SINE B4 3 155 -10 5 1464 815 185 20 20 chr9 115244666 115244815 -8831357 - B1_Mur4 SINE Alu 0 150 2 5 1464 375 262 21 106 chr9 115244692 115244833 -8831339 - MT2B LTR ERVL -323 278 150 5 1464 1762 154 31 0 chr9 115245176 115245469 -8830703 + MTC LTR MaLR 120 421 0 5 1464 1781 130 42 10 chr9 115245469 115245779 -8830393 + MTC-int LTR MaLR 1 320 -938 5 1464 1085 229 13 13 chr9 115246989 115247219 -8828953 - B4 SINE B4 -8 284 55 5 1464 246 32 0 0 chr9 115248334 115248365 -8827807 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1464 844 259 77 32 chr9 115248773 115249020 -8827152 - B4A SINE B4 -7 285 28 5 1464 425 268 122 59 chr9 115249034 115249304 -8826868 + B4A SINE B4 3 289 -3 5 1464 300 83 0 0 chr9 115249364 115249412 -8826760 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1464 286 350 26 59 chr9 115250951 115251103 -8825069 - MIRc SINE MIR -42 226 80 5 1464 247 154 15 15 chr9 115251271 115251337 -8824835 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1464 810 298 38 15 chr9 115251361 115251627 -8824545 - B4A SINE B4 -18 274 3 5 1464 621 234 95 14 chr9 115251995 115252142 -8824030 + B4A SINE B4 9 167 -125 5 1464 2140 292 89 77 chr9 115252138 115252244 -8823928 - MTE-int LTR MaLR -139 1441 1332 5 1464 2485 80 6 27 chr9 115252244 115252578 -8823594 - ORR1A2 LTR MaLR 0 327 1 5 1464 2140 292 89 77 chr9 115252578 115253213 -8822959 - MTE-int LTR MaLR -249 1331 671 5 1464 802 242 0 0 chr9 115253213 115253362 -8822810 - RSINE1 SINE B4 -14 151 3 5 1464 2140 292 89 77 chr9 115253362 115253486 -8822686 - MTE-int LTR MaLR -910 670 565 5 1464 330 235 12 0 chr9 115253473 115253554 -8822618 - RMER13B LTR ERVK -84 824 743 5 1464 2339 239 70 97 chr9 115253556 115254422 -8821750 - RMER17B LTR ERVK -115 843 1 5 1464 230 351 16 58 chr9 115254710 115254831 -8821341 - MLT1K LTR MaLR -291 304 189 5 1464 697 266 0 60 chr9 115255017 115255185 -8820987 - RSINE1 SINE B4 0 165 8 5 1464 376 346 55 36 chr9 115255706 115255930 -8820242 - MamGypLTR1c LTR Gypsy -8 795 552 5 1464 857 180 6 0 chr9 115256624 115256796 -8819376 + CT-rich Low_complexity Low_complexity 2 174 0 5 1464 519 292 13 52 chr9 115256797 115256811 -8819361 - ID_B1 SINE B4 0 224 85 5 1464 619 267 38 0 chr9 115256811 115256942 -8819230 - B1F1 SINE Alu -10 139 4 5 1464 486 0 0 0 chr9 115256947 115257001 -8819171 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1464 658 286 96 37 chr9 115257022 115257294 -8818878 - B4A SINE B4 -4 288 1 5 1464 476 72 0 14 chr9 115257347 115257417 -8818755 + (TCCA)n Simple_repeat Simple_repeat 2 70 0 5 1464 232 241 130 0 chr9 115257493 115257547 -8818625 - RSINE1 SINE B4 -92 73 13 5 1464 618 194 9 0 chr9 115259283 115259391 -8816781 - B1F SINE Alu -17 132 24 5 1464 249 274 0 16 chr9 115259875 115259938 -8816234 - RMER21B LTR ERV1 -276 566 505 5 1464 1151 15 0 7 chr9 115259944 115260082 -8816090 + (CCCTAA)n Simple_repeat Simple_repeat 3 139 0 5 1464 330 26 0 0 chr9 115260096 115260135 -8816037 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 1464 1385 217 77 10 chr9 115260790 115261130 -8815042 - ORR1E LTR MaLR 0 379 1 5 1464 482 0 138 0 chr9 115261158 115261296 -8814876 + (CCTG)n Simple_repeat Simple_repeat 4 160 0 5 1464 315 274 51 0 chr9 115261296 115261399 -8814773 - ID_B1 SINE B4 -77 147 39 5 1464 454 194 240 8 chr9 115261412 115261537 -8814635 - Lx6 LINE L1 -7 7453 7300 5 1464 280 133 33 0 chr9 115261632 115261692 -8814480 + GA-rich Low_complexity Low_complexity 2 63 0 5 1464 3952 195 8 10 chr9 115261876 115262605 -8813567 - Lx6 LINE L1 -177 7283 6556 5 1464 370 305 123 52 chr9 115263453 115263664 -8812508 + B4A SINE B4 44 269 -23 5 1464 702 211 0 0 chr9 115263711 115263891 -8812281 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1464 294 235 29 0 chr9 115263891 115263959 -8812213 + (CATA)n Simple_repeat Simple_repeat 3 72 0 5 1464 209 336 0 16 chr9 115265186 115265307 -8810865 + CT-rich Low_complexity Low_complexity 3 121 0 5 1464 477 219 40 24 chr9 115265539 115265665 -8810507 + B1F SINE Alu 2 129 -20 5 1464 226 300 0 62 chr9 115266922 115266986 -8809186 + MER20 DNA MER1_type 4 63 -156 5 1464 235 186 91 118 chr9 115267068 115267178 -8808994 + MER2 DNA MER2_type 89 195 -150 5 1464 2113 108 97 20 chr9 115267191 115267532 -8808640 + ORR1B2 LTR MaLR 1 367 0 5 1464 762 277 21 191 chr9 115267596 115268020 -8808152 + ORR1E LTR MaLR 3 354 -5 5 1464 430 329 59 7 chr9 115268028 115268181 -8807991 + MER2 DNA MER2_type 183 343 -2 5 1464 639 39 0 0 chr9 115268291 115268369 -8807803 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1464 497 266 54 104 chr9 115268413 115268456 -8807716 - B3 SINE B2 -2 214 177 5 1464 453 36 0 0 chr9 115268456 115268511 -8807661 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1464 649 266 54 104 chr9 115268511 115268689 -8807483 - B3A SINE B2 -40 176 4 5 1464 207 0 0 0 chr9 115268715 115268738 -8807434 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1464 398 294 31 8 chr9 115268886 115269018 -8807154 + PB1D10 SINE Alu 2 147 -1 5 1464 242 123 0 17 chr9 115269069 115269127 -8807045 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 5 1464 409 248 57 64 chr9 115269710 115269912 -8806260 + B3 SINE B2 3 195 0 5 1464 985 264 81 46 chr9 115270199 115270544 -8805628 - ORR1E LTR MaLR 0 359 3 5 1464 522 189 66 0 chr9 115270959 115271050 -8805122 + ORR1C2 LTR MaLR 3 100 -274 5 1464 3114 169 58 14 chr9 115271050 115271680 -8804492 - RLTR17 LTR ERVK 0 583 1 5 1464 930 185 186 21 chr9 115271685 115271922 -8804250 + ORR1C2 LTR MaLR 109 384 0 5 1464 2632 61 3 0 chr9 115271929 115272255 -8803917 + ORR1A2 LTR MaLR 1 327 0 5 1464 672 253 63 50 chr9 115272496 115272702 -8803470 - L1_Mur3 LINE L1 -709 5591 5356 5 1464 239 0 32 0 chr9 115272702 115272733 -8803439 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1464 667 253 63 51 chr9 115272733 115272766 -8803406 - L1_Mur3 LINE L1 -923 5377 5352 5 1464 251 250 44 0 chr9 115272855 115272923 -8803249 + L1M2 LINE L1 5410 5480 -820 5 1464 426 85 0 0 chr9 115272934 115272993 -8803179 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1464 283 250 0 14 chr9 115272993 115273066 -8803106 + L1M2 LINE L1 5524 5595 -705 5 1464 1217 215 43 25 chr9 115273074 115273355 -8802817 + B4A SINE B4 5 290 -2 5 1464 1595 195 53 84 chr9 115273526 115273926 -8802246 - ORR1C2 LTR MaLR -2 417 1 6 1464 229 250 0 0 chr9 115273935 115273987 -8802185 + L1M5 LINE L1 5731 5782 -382 6 1464 235 252 138 147 chr9 115274533 115274649 -8801523 + PB1D10 SINE Alu 1 115 -2 6 1464 672 258 73 12 chr9 115274652 115274817 -8801355 + B3A SINE B2 1 175 -23 6 1464 1211 228 99 26 chr9 115275008 115275180 -8800992 - MTE2a LTR MaLR -2 377 179 6 1464 1065 220 146 37 chr9 115275180 115275557 -8800615 - MTD LTR MaLR 0 419 2 6 1464 1211 228 99 26 chr9 115275557 115275686 -8800486 - MTE2a LTR MaLR -201 178 54 6 1464 317 306 101 25 chr9 115275929 115276127 -8800045 - L1ME1 LINE L1 -126 6053 5841 6 1464 249 242 50 90 chr9 115276148 115276248 -8799924 - MER63D DNA AcHobo -909 152 57 6 1464 831 232 17 0 chr9 115276374 115276555 -8799617 - B3 SINE B2 -6 210 27 6 1464 1313 103 11 0 chr9 115276555 115276740 -8799432 + RMER10B LTR ERVL 1 187 -211 6 1464 744 94 0 0 chr9 115276744 115276850 -8799322 + (TTCTC)n Simple_repeat Simple_repeat 5 110 0 6 1464 800 119 42 0 chr9 115276850 115276968 -8799204 + RMER10B LTR ERVL 276 398 0 6 1464 470 275 9 9 chr9 115277411 115277521 -8798651 - ID_B1 SINE B4 0 224 115 6 1464 745 206 68 42 chr9 115277571 115277763 -8798409 + B3A SINE B2 1 197 -1 6 1464 205 364 0 35 chr9 115277766 115277880 -8798292 + MIRb SINE MIR 143 252 -16 6 1464 2401 258 79 80 chr9 115279775 115280611 -8795561 - RCHARR1 DNA MER1_type -77 897 62 6 1464 201 39 0 0 chr9 115280611 115280637 -8795535 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1464 2401 258 79 80 chr9 115280637 115280698 -8795474 - RCHARR1 DNA MER1_type -913 61 1 6 1464 600 277 145 11 chr9 115280701 115280880 -8795292 + Lx LINE L1 7131 7333 -140 6 1464 1673 136 61 20 chr9 115280880 115281174 -8794998 - Lx LINE L1 -10 6644 6339 6 1464 12386 135 19 21 chr9 115281174 115281393 -8794779 + Lx LINE L1 3839 4061 -1822 6 1464 759 69 0 0 chr9 115281393 115281495 -8794677 + (TC)n Simple_repeat Simple_repeat 2 103 0 6 1464 12386 135 19 21 chr9 115281495 115282501 -8793671 + Lx LINE L1 4062 5097 -786 6 1464 3179 63 0 10 chr9 115282501 115282901 -8793271 + MTA_Mm LTR MaLR 1 396 0 6 1464 7334 70 41 72 chr9 115282901 115284034 -8792138 + MTA_Mm-int LTR MaLR 1 1098 0 6 1464 3320 40 2 10 chr9 115284034 115284433 -8791739 + MTA_Mm LTR MaLR 1 396 0 6 1464 12386 135 19 21 chr9 115284433 115284641 -8791531 + Lx LINE L1 5098 5298 -585 6 1464 1164 75 7 0 chr9 115284641 115284787 -8791385 + B1_Mus1 SINE Alu 1 147 -1 6 1464 12386 105 9 6 chr9 115284787 115285841 -8790331 + Lx LINE L1 5299 6330 -324 6 1464 243 293 84 21 chr9 115285837 115285980 -8790192 + Lx8 LINE L1 7320 7471 -2 6 1464 306 306 133 60 chr9 115286031 115286262 -8789910 - MLT1K LTR MaLR -21 589 326 6 1464 1335 194 78 78 chr9 115286495 115286663 -8789509 + ORR1D1 LTR MaLR 1 159 -215 6 1464 974 90 0 18 chr9 115286663 115286833 -8789339 + (TC)n Simple_repeat Simple_repeat 1 167 0 6 1464 1335 194 78 78 chr9 115286833 115287038 -8789134 + ORR1D1 LTR MaLR 160 373 -1 6 1464 410 248 19 9 chr9 115287090 115287196 -8788976 + PB1D10 SINE Alu 1 107 -10 6 1464 664 314 56 14 chr9 115287243 115287456 -8788716 + Lx8 LINE L1 7107 7328 -145 6 1464 258 32 0 0 chr9 115287456 115287487 -8788685 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1464 447 118 0 0 chr9 115287489 115287574 -8788598 + (TCTG)n Simple_repeat Simple_repeat 2 86 0 6 1464 518 241 19 0 chr9 115287589 115287697 -8788475 + PB1D9 SINE Alu 6 115 -5 6 1464 284 158 0 17 chr9 115287697 115287755 -8788417 + GA-rich Low_complexity Low_complexity 4 60 0 6 1464 324 232 14 0 chr9 115288165 115288234 -8787938 - B3A SINE B2 -119 79 10 6 1464 317 215 12 37 chr9 115290257 115290339 -8785833 + PB1D10 SINE Alu 5 84 -33 6 1464 512 330 99 105 chr9 115290491 115290883 -8785289 + MLT1B LTR MaLR 1 390 0 6 1464 324 290 21 0 chr9 115290957 115291050 -8785122 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1464 280 240 5 58 chr9 115291063 115291253 -8784919 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1464 353 287 0 10 chr9 115291266 115291368 -8784804 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 6 1464 882 258 62 31 chr9 115291370 115291630 -8784542 - B4A SINE B4 -7 285 18 6 1464 552 251 17 0 chr9 115292320 115292448 -8783724 + B1F SINE Alu 1 130 -19 6 1464 1055 236 14 5 chr9 115292521 115292738 -8783434 + B4A SINE B4 3 221 -71 6 1464 904 154 0 14 chr9 115292760 115292898 -8783274 + B1_Mur4 SINE Alu 13 148 -2 6 1464 241 26 0 50 chr9 115292971 115293011 -8783161 + (AGGGGG)n Simple_repeat Simple_repeat 5 42 0 6 1464 212 328 0 0 chr9 115293091 115293152 -8783020 + MIRc SINE MIR 102 162 -106 6 1464 979 254 16 36 chr9 115293537 115293786 -8782386 - B4 SINE B4 -3 289 46 6 1464 1290 196 159 12 chr9 115293791 115294117 -8782055 - MTD LTR MaLR 0 419 46 6 1464 1290 247 46 54 chr9 115294811 115295183 -8780989 - ORR1D2 LTR MaLR 0 370 2 6 1464 597 208 17 0 chr9 115295230 115295403 -8780769 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 1464 645 258 191 6 chr9 115295417 115295600 -8780572 - ID_B1 SINE B4 -4 220 4 6 1464 286 338 0 0 chr9 115295690 115295767 -8780405 + ID4_ SINE ID 1 77 -6 6 1464 809 281 80 29 chr9 115296301 115296576 -8779596 - B4A SINE B4 0 292 4 6 1464 1606 280 64 13 chr9 115297044 115297511 -8778661 + Lx8 LINE L1 6833 7323 -150 6 1464 915 292 85 71 chr9 115298080 115298445 -8777727 - ORR1D2 LTR MaLR 0 370 1 6 1464 686 217 93 47 chr9 115298581 115298774 -8777398 - ORR1D1 LTR MaLR -7 367 166 6 1464 827 165 0 8 chr9 115298774 115299040 -8777132 + GA-rich Low_complexity Low_complexity 1 263 0 6 1464 550 229 50 8 chr9 115299057 115299176 -8776996 - ORR1D1 LTR MaLR -250 124 1 6 1464 273 203 68 0 chr9 115299239 115299298 -8776874 - B4A SINE B4 -14 278 216 6 1464 758 157 11 0 chr9 115299312 115299498 -8776674 + CT-rich Low_complexity Low_complexity 1 188 0 6 1464 842 274 19 0 chr9 115299502 115299717 -8776455 - ID_B1 SINE B4 0 224 6 6 1464 327 261 72 80 chr9 115299884 115300009 -8776163 - LTR84b LTR ERVL -30 731 608 6 1464 392 293 75 13 chr9 115300856 115301015 -8775157 - LTR84b LTR ERVL -506 255 87 6 1464 504 225 199 81 chr9 115301174 115301435 -8774737 - B4A SINE B4 0 292 1 6 1464 495 0 0 0 chr9 115301556 115301611 -8774561 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1464 1376 221 155 3 chr9 115301612 115301948 -8774224 + MTD LTR MaLR 20 406 -13 6 1464 25 0 0 0 chr9 115302382 115302407 -8773765 + AT_rich Low_complexity Low_complexity 1 25 0 6 1464 959 276 26 38 chr9 115302444 115302711 -8773461 + B4 SINE B4 15 278 -14 6 1464 434 18 0 18 chr9 115302762 115302818 -8773354 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1464 402 21 0 0 chr9 115302818 115302864 -8773308 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1464 312 315 61 54 chr9 115303548 115303856 -8772316 - B4A SINE B4 -7 285 1 6 1464 1092 237 85 145 chr9 115305093 115305519 -8770653 + MT2B LTR ERVL 1 540 -61 6 1464 1119 129 0 0 chr9 115305519 115305697 -8770475 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 1464 1085 237 85 145 chr9 115305697 115305788 -8770384 + MT2B LTR ERVL 424 493 -40 6 1464 1076 124 6 0 chr9 115305788 115305966 -8770206 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1464 1085 237 85 145 chr9 115305966 115305989 -8770183 + MT2B LTR ERVL 494 516 -17 6 1464 1381 174 4 13 chr9 115305989 115306216 -8769956 + URR1B DNA MER1_type 1 225 0 6 1464 1085 237 85 145 chr9 115306216 115306240 -8769932 + MT2B LTR ERVL 517 532 -1 6 1464 1104 256 169 20 chr9 115307164 115307518 -8768654 - MTC LTR MaLR -14 407 1 6 1464 3811 155 81 1 chr9 115307526 115307863 -8768309 - RMER6D LTR ERVK -4 716 370 6 1464 405 0 0 0 chr9 115307863 115307908 -8768264 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1464 3811 155 81 1 chr9 115307908 115308221 -8767951 - RMER6D LTR ERVK -351 369 15 6 1464 680 227 15 0 chr9 115308918 115309050 -8767122 - B1_Mur1 SINE Alu -15 134 1 6 1464 258 284 81 0 chr9 115309728 115309802 -8766370 - L1M5 LINE L1 -446 5678 5599 6 1464 1224 41 7 0 chr9 115309975 115310121 -8766051 + B1_Mus1 SINE Alu 2 148 0 6 1464 414 280 144 0 chr9 115310157 115310275 -8765897 + RSINE1 SINE B4 2 136 -29 6 1464 387 202 0 0 chr9 115311231 115311345 -8764827 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 1464 25 0 0 0 chr9 115311384 115311409 -8764763 + AT_rich Low_complexity Low_complexity 1 25 0 6 1464 653 213 0 16 chr9 115311409 115311533 -8764639 - B3 SINE B2 -68 148 27 6 1464 236 340 105 52 chr9 115311513 115311761 -8764411 - B4A SINE B4 -29 263 3 6 1464 287 286 141 109 chr9 115313123 115313159 -8763013 + B3A SINE B2 1 56 -142 6 1464 326 227 15 29 chr9 115313159 115313227 -8762945 + B4A SINE B4 54 120 -172 6 1464 287 286 141 109 chr9 115313227 115313315 -8762857 + B3A SINE B2 57 198 0 6 1464 421 264 200 55 chr9 115313489 115313709 -8762463 - RMER15 LTR ERVL -14 561 310 6 1464 768 234 81 24 chr9 115313976 115314186 -8761986 + ID_B1 SINE B4 1 222 -2 6 1464 436 271 111 56 chr9 115314798 115314978 -8761194 + MLT1E2 LTR MaLR 297 489 -138 6 1464 670 209 0 0 chr9 115315070 115315185 -8760987 + RSINE1 SINE B4 13 127 -38 6 1464 474 33 0 0 chr9 115315223 115315283 -8760889 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1464 221 186 49 33 chr9 115315299 115315360 -8760812 + A-rich Low_complexity Low_complexity 3 64 0 6 1464 1003 291 38 15 chr9 115316843 115317108 -8759064 - B4A SINE B4 0 292 22 6 1464 587 274 58 44 chr9 115318003 115318315 -8757857 + RLTR15 LTR ERVK 45 329 -30 6 1464 249 307 71 58 chr9 115318348 115318569 -8757603 + L2c LINE L2 3114 3351 -24 6 1464 307 333 95 15 chr9 115318618 115318755 -8757417 - HAL1-3A_ME LINE L1 -419 2439 2292 6 1464 218 175 69 17 chr9 115318755 115318813 -8757359 + CT-rich Low_complexity Low_complexity 4 64 0 6 1464 302 269 159 29 chr9 115318814 115318952 -8757220 - HAL1-3A_ME LINE L1 -419 2439 2284 6 1464 521 258 85 51 chr9 115319954 115320130 -8756042 + B3A SINE B2 1 182 -16 6 1464 858 200 0 0 chr9 115320155 115320428 -8755744 + (CA)n Simple_repeat Simple_repeat 1 273 0 6 1464 927 183 0 0 chr9 115320442 115320622 -8755550 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1464 279 0 0 0 chr9 115320892 115320923 -8755249 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1464 216 200 0 0 chr9 115321569 115321609 -8754563 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1464 282 273 95 51 chr9 115321645 115321803 -8754369 - L1MC1 LINE L1 -13 6320 6156 6 1464 537 214 54 31 chr9 115321806 115321936 -8754236 + B1F SINE Alu 14 146 -3 7 1464 386 332 106 28 chr9 115322030 115322284 -8753888 - L1MC1 LINE L1 -168 6165 5892 6 1464 1158 283 62 14 chr9 115322293 115322651 -8753521 - MTD LTR MaLR -44 375 1 7 1464 479 172 33 0 chr9 115322858 115322926 -8753246 + polypyrimidine Low_complexity Low_complexity 57 128 0 7 1464 675 0 0 0 chr9 115322926 115323001 -8753171 + (TTC)n Simple_repeat Simple_repeat 3 77 0 7 1464 479 172 33 0 chr9 115323001 115323054 -8753118 + polypyrimidine Low_complexity Low_complexity 4 56 0 7 1464 678 327 0 51 chr9 115323055 115323271 -8752901 - B4 SINE B4 -87 205 1 7 1464 403 296 57 36 chr9 115323833 115324026 -8752146 + L1MCb LINE L1 982 1178 -4867 7 1464 391 267 62 33 chr9 115324135 115324379 -8751793 + L1MCb LINE L1 1779 2078 -4673 7 1464 796 244 41 5 chr9 115324388 115324582 -8751590 - B3 SINE B2 -11 205 5 7 1464 31 0 0 0 chr9 115324627 115324658 -8751514 + AT_rich Low_complexity Low_complexity 1 31 0 7 1464 836 286 31 83 chr9 115324675 115325158 -8751014 + L1MCb LINE L1 2491 2966 -3598 7 1464 290 300 101 27 chr9 115325226 115325445 -8750727 + L1MCb LINE L1 3227 3461 -3103 7 1464 324 184 310 0 chr9 115325445 115325532 -8750640 + B3A SINE B2 2 115 -83 7 1464 189 0 0 0 chr9 115325556 115325577 -8750595 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1464 327 284 74 7 chr9 115325613 115325762 -8750410 + L1M5 LINE L1 3728 3886 -2260 7 1464 245 294 54 0 chr9 115325775 115325867 -8750305 - MLT1H LTR MaLR -126 423 327 7 1464 204 182 0 0 chr9 115325949 115325993 -8750179 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 7 1464 383 288 24 70 chr9 115326109 115326322 -8749850 - Lx8 LINE L1 0 7473 7271 7 1464 588 268 45 7 chr9 115326317 115326471 -8749701 + Lx8 LINE L1 6421 6580 -893 7 1464 655 265 56 71 chr9 115326515 115326767 -8749405 + B4A SINE B4 1 248 -44 7 1464 432 0 0 0 chr9 115326807 115326855 -8749317 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1464 406 294 146 7 chr9 115327665 115327809 -8748363 + MLT1H LTR MaLR 348 511 -38 7 1464 324 280 48 167 chr9 115327811 115327970 -8748202 + MT2B LTR ERVL 26 152 -449 7 1464 711 184 8 31 chr9 115327970 115328099 -8748073 + B1F SINE Alu 3 128 -21 7 1464 1843 137 11 7 chr9 115328194 115328474 -8747698 - ORR1C1 LTR MaLR -97 281 1 7 1464 4997 216 56 63 chr9 115328474 115330004 -8746168 - ORR1C1-int LTR MaLR 0 1509 1 7 1464 2381 136 25 3 chr9 115330006 115330374 -8745798 - ORR1C1 LTR MaLR -2 376 1 7 1464 1202 232 87 69 chr9 115330667 115331001 -8745171 - ORR1E LTR MaLR -14 345 6 7 1464 475 323 171 16 chr9 115331302 115331554 -8744618 - B4 SINE B4 0 292 2 7 1464 698 213 174 5 chr9 115331569 115331753 -8744419 - ID_B1 SINE B4 -6 218 4 7 1464 1044 198 39 0 chr9 115332296 115332503 -8743669 - B3 SINE B2 0 216 2 7 1464 701 269 29 0 chr9 115332887 115333062 -8743110 - B3A SINE B2 -15 183 4 7 1464 742 279 27 23 chr9 115333510 115333730 -8742442 + ID_B1 SINE B4 1 221 -3 7 1464 572 288 60 10 chr9 115333739 115333939 -8742233 + B3 SINE B2 2 211 -5 7 1464 634 255 6 25 chr9 115333975 115334132 -8742040 + RSINE1 SINE B4 2 155 -10 7 1464 877 200 70 5 chr9 115334627 115334828 -8741344 + B4 SINE B4 10 223 -69 7 1464 1043 240 28 128 chr9 115334838 115335197 -8740975 - MTE2a LTR MaLR -52 327 5 7 1464 609 239 0 0 chr9 115335256 115335436 -8740736 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1464 643 210 11 0 chr9 115335463 115335639 -8740533 + (CA)n Simple_repeat Simple_repeat 1 178 0 7 1464 977 244 147 35 chr9 115337058 115337377 -8738795 - MTE2b LTR MaLR -9 370 16 7 1464 1186 278 59 85 chr9 115337392 115337919 -8738253 + MT2A LTR ERVL 21 533 0 7 1464 480 296 0 0 chr9 115338100 115338225 -8737947 + MIRb SINE MIR 116 240 -28 7 1464 497 298 37 1 chr9 115338860 115339015 -8737157 - B3A SINE B2 -56 160 2 7 1464 1199 198 84 18 chr9 115339309 115339637 -8736535 - MTEb LTR MaLR -2 357 24 7 1464 446 303 7 0 chr9 115339836 115339981 -8736191 + L1MB7 LINE L1 5816 5961 -223 7 1464 3237 307 102 92 chr9 115340173 115341437 -8734735 - ORR1E-int LTR MaLR -40 1540 278 7 1464 2882 85 10 8 chr9 115341437 115341839 -8734333 - RLTR9D LTR ERVK 0 403 1 7 1464 3237 307 102 92 chr9 115341839 115342099 -8734073 - ORR1E-int LTR MaLR -1303 277 1 7 1464 562 314 84 39 chr9 115342114 115342449 -8733723 - ORR1E LTR MaLR -9 350 1 7 1464 437 284 149 60 chr9 115342702 115342983 -8733189 - ORR1E LTR MaLR -10 349 44 7 1464 189 121 0 0 chr9 115342998 115343031 -8733141 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1464 248 273 0 9 chr9 115343068 115343179 -8732993 + (TATG)n Simple_repeat Simple_repeat 4 113 0 7 1464 556 227 6 6 chr9 115343172 115343349 -8732823 + (TG)n Simple_repeat Simple_repeat 2 178 0 7 1465 1288 258 34 40 chr9 115344472 115344852 -8731320 - MTEa LTR MaLR -1 378 1 7 1465 690 72 0 0 chr9 115344920 115345017 -8731155 + (TC)n Simple_repeat Simple_repeat 2 98 0 7 1465 250 315 108 0 chr9 115345247 115345358 -8730814 - L1ME1 LINE L1 -15 6164 6042 7 1465 1647 213 110 26 chr9 115345415 115345796 -8730376 - MTC LTR MaLR -2 417 5 7 1465 1998 192 35 176 chr9 115345802 115346460 -8729712 - MTC-int LTR MaLR -2 1256 692 7 1465 1731 140 129 7 chr9 115346467 115346769 -8729403 - MTC LTR MaLR 0 421 83 7 1465 583 149 11 11 chr9 115347726 115347821 -8728351 - MTC LTR MaLR -326 95 1 7 1465 1862 253 47 71 chr9 115347825 115348618 -8727554 - MTD-int LTR MaLR -528 730 1 7 1465 1608 200 137 11 chr9 115348628 115348987 -8727185 - MTD LTR MaLR -11 408 5 7 1465 227 240 0 0 chr9 115349460 115349510 -8726662 + G-rich Low_complexity Low_complexity 1 50 0 7 1465 403 279 111 50 chr9 115349521 115349702 -8726470 + MER53 DNA hAT 1 192 -1 7 1465 216 135 0 0 chr9 115349856 115349893 -8726279 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1465 273 89 0 0 chr9 115349950 115349995 -8726177 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 7 1465 832 259 104 20 chr9 115350498 115350835 -8725337 + MTD LTR MaLR 5 406 -13 7 1465 205 184 0 0 chr9 115350903 115350941 -8725231 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1465 649 238 138 0 chr9 115350997 115351157 -8725015 - B3A SINE B2 -16 182 1 7 1465 1276 47 56 39 chr9 115351659 115351837 -8724335 + B2_Mm2 SINE B2 1 181 -14 7 1465 237 302 28 19 chr9 115351857 115351965 -8724207 - PB1D7 SINE Alu -7 113 5 7 1465 549 314 153 11 chr9 115352045 115352483 -8723689 - HAL1 LINE L1 -616 1891 1392 7 1465 409 328 80 48 chr9 115352512 115352762 -8723410 - HAL1 LINE L1 -1174 1333 1076 7 1465 287 269 39 0 chr9 115352805 115352909 -8723263 - L1MB4 LINE L1 -277 5903 5796 7 1465 336 24 0 0 chr9 115353021 115353062 -8723110 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 7 1465 404 308 89 20 chr9 115353271 115353564 -8722608 - MT2A LTR ERVL 0 533 221 7 1465 238 330 134 0 chr9 115353643 115353740 -8722432 - MTEa LTR MaLR -266 113 4 7 1465 197 316 0 0 chr9 115354623 115354680 -8721492 - MIRb SINE MIR -14 254 198 7 1465 231 222 65 22 chr9 115354817 115354955 -8721217 + (TATATG)n Simple_repeat Simple_repeat 3 146 0 7 1465 198 103 14 81 chr9 115354959 115355033 -8721139 + (TATG)n Simple_repeat Simple_repeat 2 70 0 7 1465 215 237 40 0 chr9 115355045 115355121 -8721051 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 1465 316 256 12 35 chr9 115355414 115355499 -8720673 + ID_B1 SINE B4 86 168 -56 7 1465 250 296 45 27 chr9 115355499 115355525 -8720647 + PB1D10 SINE Alu 5 117 0 7 1465 298 286 43 92 chr9 115356248 115356278 -8719894 - YREP_Mm Unknown Unknown -1490 322 250 7 1465 506 276 17 0 chr9 115356278 115356394 -8719778 + ID_B1 SINE B4 105 222 -2 7 1465 298 286 43 92 chr9 115356394 115356433 -8719739 - YREP_Mm Unknown Unknown -1490 249 147 7 1465 874 296 90 53 chr9 115356591 115357336 -8718836 - L1MA5A LINE L1 -355 5942 5082 7 1465 772 228 119 5 chr9 115357358 115357552 -8718620 - B3 SINE B2 0 216 1 7 1465 621 276 99 42 chr9 115357554 115357838 -8718334 - L1MA5A LINE L1 -1001 5142 4843 7 1465 699 12 0 0 chr9 115357838 115357918 -8718254 + (CCTAT)n Simple_repeat Simple_repeat 5 84 0 7 1465 450 266 15 19 chr9 115358522 115358687 -8717485 + L1MA7 LINE L1 6125 6290 -1 7 1465 487 292 21 7 chr9 115358971 115359116 -8717056 - B1F1 SINE Alu 0 149 3 7 1465 249 98 0 0 chr9 115359461 115359502 -8716670 + (TCTCTG)n Simple_repeat Simple_repeat 1 41 0 7 1465 333 186 0 0 chr9 115359503 115359573 -8716599 + CT-rich Low_complexity Low_complexity 4 73 0 7 1465 532 248 0 0 chr9 115359573 115359674 -8716498 - PB1D7 SINE Alu -13 107 7 7 1465 683 265 107 32 chr9 115359691 115359878 -8716294 - ID_B1 SINE B4 0 224 24 7 1465 351 243 14 0 chr9 115360003 115360077 -8716095 + MER5A1 DNA MER1_type 88 162 -4 7 1465 2578 176 0 5 chr9 115360426 115360842 -8715330 + MTC LTR MaLR 3 416 -5 7 1465 6043 161 93 8 chr9 115360849 115362008 -8714164 + MTC-int LTR MaLR 1 1258 0 7 1465 180 0 0 0 chr9 115362016 115362036 -8714136 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1465 1217 61 0 0 chr9 115362036 115362183 -8713989 - B1_Mus1 SINE Alu 0 148 2 7 1465 696 171 116 0 chr9 115362183 115362312 -8713860 + MTC LTR MaLR 2 145 -276 7 1465 6269 76 27 38 chr9 115362315 115363230 -8712942 + RLTR13B3 LTR ERVK 25 929 0 7 1465 638 178 0 0 chr9 115363230 115363337 -8712835 + MTC LTR MaLR 136 242 -179 7 1465 519 283 57 26 chr9 115363398 115363590 -8712582 + B4A SINE B4 95 292 0 7 1465 417 252 47 28 chr9 115363628 115363734 -8712438 + PB1D7 SINE Alu 2 109 -11 7 1465 405 0 0 0 chr9 115363734 115363779 -8712393 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 7 1465 205 344 71 26 chr9 115364423 115364578 -8711594 + L3 LINE CR1 3339 3500 -989 7 1465 548 229 0 17 chr9 115364854 115364974 -8711198 - PB1D9 SINE Alu -1 119 2 7 1465 693 265 8 30 chr9 115366410 115366578 -8709594 + ID_B1 SINE B4 63 220 -72 7 1465 334 290 46 57 chr9 115366429 115366623 -8709549 - YREP_Mm Unknown Unknown -1487 325 134 7 1465 27 0 0 0 chr9 115366672 115366699 -8709473 + AT_rich Low_complexity Low_complexity 1 27 0 7 1465 285 350 0 23 chr9 115366863 115367101 -8709071 + (CA)n Simple_repeat Simple_repeat 1 232 0 7 1465 230 319 89 69 chr9 115367539 115367640 -8708532 - L3b LINE CR1 -86 396 294 7 1465 315 0 0 0 chr9 115367871 115367906 -8708266 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1465 471 257 80 17 chr9 115367922 115368137 -8708035 - B4A SINE B4 -20 272 1 7 1465 33221 78 23 15 chr9 115368313 115369694 -8706478 + L1Md_F3 LINE L1 621 1976 -3907 7 1465 208 0 62 0 chr9 115369694 115369726 -8706446 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1465 33221 47 38 0 chr9 115369726 115373174 -8702998 + L1Md_F3 LINE L1 1977 5585 -298 7 1465 8637 24 5 0 chr9 115373175 115374167 -8702005 + L1Md_F3 LINE L1 5588 6584 0 7 1465 28 29 0 0 chr9 115374286 115374321 -8701851 + AT_rich Low_complexity Low_complexity 1 35 0 8 1465 357 326 111 10 chr9 115374508 115374815 -8701357 + L1MA4 LINE L1 5593 5930 -370 8 1465 382 250 16 38 chr9 115375080 115375263 -8700909 + GA-rich Low_complexity Low_complexity 1 179 0 8 1465 586 67 0 0 chr9 115376045 115376120 -8700052 - URR1B DNA MER1_type 0 225 151 8 1465 271 219 40 27 chr9 115376108 115376183 -8699989 + ORR1D2 LTR MaLR 295 370 0 8 1465 569 315 6 6 chr9 115376480 115376662 -8699510 + B3A SINE B2 3 184 -14 8 1465 273 246 15 0 chr9 115376729 115376794 -8699378 + (TATG)n Simple_repeat Simple_repeat 1 66 0 8 1465 944 331 35 14 chr9 115376796 115377078 -8699094 - B4A SINE B4 -2 290 3 8 1465 887 248 25 21 chr9 115377078 115377309 -8698863 - B4 SINE B4 -60 232 1 8 1465 190 73 0 47 chr9 115377820 115377863 -8698309 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 8 1465 553 250 65 45 chr9 115378171 115378372 -8697800 + B4A SINE B4 63 267 -25 8 1465 504 0 0 0 chr9 115378373 115378429 -8697743 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1465 1678 236 24 8 chr9 115378539 115378910 -8697262 - MTE2b LTR MaLR -2 377 1 8 1465 1988 211 33 3 chr9 115379346 115379736 -8696436 + MTD LTR MaLR 18 419 0 8 1465 744 294 5 24 chr9 115380670 115380879 -8695293 - ID_B1 SINE B4 -16 208 4 8 1465 739 285 81 35 chr9 115381292 115381411 -8694761 + B4A SINE B4 5 132 -160 8 1465 507 73 0 0 chr9 115381411 115381479 -8694693 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 1465 739 285 81 35 chr9 115381479 115381617 -8694555 + B4A SINE B4 133 273 -19 8 1465 884 122 12 12 chr9 115381652 115381818 -8694354 + (GGGAGA)n Simple_repeat Simple_repeat 4 169 0 8 1465 263 222 0 16 chr9 115382076 115382140 -8694032 + MLT1A1 LTR MaLR 344 406 -2 8 1465 365 354 50 67 chr9 115382142 115382517 -8693655 + MLT1A1-int LTR MaLR 1 397 -1183 8 1465 581 287 288 17 chr9 115382552 115382848 -8693324 - MTEb LTR MaLR -3 376 1 8 1465 254 345 124 51 chr9 115382889 115383106 -8693066 + MLT1A1-int LTR MaLR 605 837 -898 8 1465 230 322 220 0 chr9 115383328 115383446 -8692726 + MLT1A1-int LTR MaLR 1165 1308 -427 8 1465 590 239 0 0 chr9 115383586 115383699 -8692473 + B4A SINE B4 122 234 -58 8 1465 410 329 0 23 chr9 115383834 115384008 -8692164 + L1M5 LINE L1 4501 4670 -1476 8 1465 1140 274 206 16 chr9 115384720 115385214 -8690958 - MER21B LTR ERV1 -45 818 231 8 1465 307 194 0 43 chr9 115385924 115385994 -8690178 + PB1D10 SINE Alu 6 72 -45 8 1465 774 263 12 7 chr9 115386003 115386211 -8689961 + B3A SINE B2 2 202 -14 8 1465 852 182 4 0 chr9 115386215 115386464 -8689708 + (CA)n Simple_repeat Simple_repeat 1 249 0 8 1465 352 297 67 80 chr9 115386862 115387012 -8689160 - ORR1E LTR MaLR -198 161 14 8 1465 397 353 52 5 chr9 115387269 115387460 -8688712 - MIR SINE MIR -61 201 2 8 1465 315 49 0 0 chr9 115387607 115387648 -8688524 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1465 694 272 88 49 chr9 115387652 115387915 -8688257 - B4 SINE B4 -10 282 10 8 1465 594 0 0 0 chr9 115388923 115388989 -8687183 + (TC)n Simple_repeat Simple_repeat 1 66 0 8 1465 180 0 0 0 chr9 115388992 115389012 -8687160 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1465 423 0 0 0 chr9 115389012 115389058 -8687114 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1465 787 267 165 4 chr9 115389104 115389248 -8686924 - B4A SINE B4 0 292 125 8 1465 702 35 0 0 chr9 115389248 115389333 -8686839 + (TCC)n Simple_repeat Simple_repeat 2 86 0 8 1465 787 267 165 4 chr9 115389333 115389436 -8686736 - B4A SINE B4 -168 124 6 8 1465 732 246 24 62 chr9 115389840 115390048 -8686124 + MTEa LTR MaLR 21 220 -159 8 1465 362 265 42 42 chr9 115390671 115390813 -8685359 + YREP_Mm Unknown Unknown 155 296 -1516 8 1465 851 168 0 0 chr9 115390693 115390824 -8685348 - ID_B1 SINE B4 -3 221 91 8 1465 283 283 73 42 chr9 115391683 115391779 -8684393 - ID_B1 SINE B4 -46 178 80 8 1465 496 288 100 19 chr9 115391884 115392153 -8684019 - B4A SINE B4 0 292 2 8 1465 765 229 18 58 chr9 115392590 115392630 -8683542 - B3 SINE B2 0 216 176 8 1465 360 0 0 0 chr9 115392630 115392670 -8683502 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1465 765 229 18 58 chr9 115392670 115392852 -8683320 - B3 SINE B2 -41 175 4 8 1465 699 12 0 0 chr9 115393119 115393199 -8682973 + (TC)n Simple_repeat Simple_repeat 1 80 0 8 1465 465 333 105 16 chr9 115393201 115393515 -8682657 - L1M4 LINE L1 -5587 955 614 8 1465 488 337 28 28 chr9 115393646 115393936 -8682236 - B4A SINE B4 0 292 3 8 1465 209 200 0 0 chr9 115393981 115394031 -8682141 + T-rich Low_complexity Low_complexity 2 51 0 8 1465 841 268 111 44 chr9 115394265 115394581 -8681591 - MTEa LTR MaLR -8 371 35 8 1465 1382 197 45 17 chr9 115394581 115394870 -8681302 - Lx7 LINE L1 -13 7683 7387 8 1465 331 196 0 0 chr9 115394866 115394922 -8681250 - Lx7 LINE L1 -753 6943 6888 8 1465 1266 76 0 0 chr9 115395002 115395173 -8680999 + (GGGAGA)n Simple_repeat Simple_repeat 5 175 0 8 1465 1554 140 115 92 chr9 115395221 115395622 -8680550 + RMER17C LTR ERVK 1 410 0 8 1465 1290 331 38 2 chr9 115396466 115396863 -8679309 + Tigger7 DNA MER2_type 3 413 -2078 8 1465 493 363 88 41 chr9 115397432 115397820 -8678352 + LTR33 LTR ERVL 106 511 -4 8 1465 249 33 0 0 chr9 115398036 115398066 -8678106 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 8 1465 1289 88 16 6 chr9 115398875 115399058 -8677114 + B2_Mm2 SINE B2 11 195 0 8 1465 423 56 0 0 chr9 115399058 115399112 -8677060 + (GAA)n Simple_repeat Simple_repeat 1 54 0 8 1465 1620 0 0 0 chr9 115399112 115399292 -8676880 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 8 1465 229 258 0 123 chr9 115400321 115400427 -8675745 + Charlie16a DNA MER1_type 180 272 -70 8 1465 265 255 0 0 chr9 115401745 115401796 -8674376 - MIRb SINE MIR -115 153 103 8 1465 180 111 0 0 chr9 115403128 115403155 -8673017 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 8 1465 553 157 0 0 chr9 115403422 115403511 -8672661 + ORR1A3 LTR MaLR 1 89 -238 8 1465 993 57 0 0 chr9 115403509 115403632 -8672540 + ORR1A3 LTR MaLR 196 318 -8 8 1465 288 0 0 0 chr9 115404480 115404512 -8671660 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1465 709 180 0 66 chr9 115404540 115404677 -8671495 - RSINE1 SINE B4 -35 130 3 8 1465 324 48 0 0 chr9 115404731 115404773 -8671399 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 8 1465 455 132 143 0 chr9 115404837 115404928 -8671244 - PB1D10 SINE Alu -7 110 7 8 1465 246 303 26 68 chr9 115405037 115405154 -8671018 + L2 LINE L2 2783 2894 -525 8 1465 23 33 0 0 chr9 115408559 115408589 -8667583 + AT_rich Low_complexity Low_complexity 1 30 0 8 1465 912 228 166 43 chr9 115408855 115409037 -8667135 - MTE2a LTR MaLR -1 378 174 8 1465 576 42 0 0 chr9 115409037 115409108 -8667064 + (TCC)n Simple_repeat Simple_repeat 2 72 0 8 1465 912 251 166 41 chr9 115409108 115409267 -8666905 - MTE2a LTR MaLR -219 200 34 8 1465 270 339 34 17 chr9 115409311 115409428 -8666744 - MER20 DNA MER1_type -69 150 32 8 1465 436 307 16 38 chr9 115409554 115409740 -8666432 + L1M5 LINE L1 5604 5785 -339 8 1465 365 316 97 51 chr9 115410006 115410223 -8665949 + ORR1E LTR MaLR 95 321 -38 8 1465 940 202 32 46 chr9 115410514 115410723 -8665449 + B3 SINE B2 1 208 -8 8 1465 225 0 0 0 chr9 115410723 115410748 -8665424 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 8 1465 367 266 0 0 chr9 115410761 115410840 -8665332 + ID4 SINE ID 3 81 -2 8 1465 774 307 9 9 chr9 115410879 115411099 -8665073 + ID_B1 SINE B4 5 224 0 8 1465 1008 0 0 0 chr9 115411658 115411770 -8664402 + (CCCCAG)n Simple_repeat Simple_repeat 3 114 0 8 1465 364 285 84 26 chr9 115411976 115412131 -8664041 - L1MEc LINE L1 -5518 882 719 8 1465 318 279 80 93 chr9 115412198 115412248 -8663924 - MER20 DNA MER1_type -27 192 147 8 1465 554 230 49 21 chr9 115412248 115412390 -8663782 - B1_Mur1 SINE Alu -3 146 1 8 1465 318 279 80 93 chr9 115412390 115412489 -8663683 - MER20 DNA MER1_type -73 146 45 8 1465 346 298 102 58 chr9 115412712 115413025 -8663147 - L1MEc LINE L1 -6019 381 55 8 1465 411 21 0 0 chr9 115413059 115413107 -8663065 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 8 1465 371 256 16 33 chr9 115413398 115413519 -8662653 + Lx8 LINE L1 7053 7171 -302 8 1465 236 149 41 41 chr9 115413703 115413752 -8662420 + RMER15 LTR ERVL 350 398 -177 8 1465 549 347 109 71 chr9 115414134 115414723 -8661449 - MER21B LTR ERV1 -149 714 104 8 1465 259 344 46 63 chr9 115415214 115415388 -8660784 + MLT1I LTR MaLR 36 206 -205 8 1465 425 263 0 0 chr9 115415429 115415524 -8660648 + MLT1I LTR MaLR 307 401 -10 8 1465 355 301 51 9 chr9 115415559 115415728 -8660444 - MIR SINE MIR -60 208 31 8 1465 839 272 12 47 chr9 115415754 115416030 -8660142 - ID_B1 SINE B4 -22 270 12 8 1465 233 274 39 69 chr9 115416817 115416919 -8659253 - B4 SINE B4 -85 207 109 8 1465 213 39 0 0 chr9 115416972 115416998 -8659174 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 1465 1074 51 28 6 chr9 115417017 115417193 -8658979 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 8 1465 2178 161 72 20 chr9 115417364 115417764 -8658408 + MTC LTR MaLR 1 421 0 8 1465 5138 169 119 29 chr9 115417764 115418919 -8657253 + MTC-int LTR MaLR 1 1258 0 8 1465 1957 148 130 13 chr9 115418919 115419020 -8657152 + MTC LTR MaLR 1 108 -313 8 1465 252 0 0 0 chr9 115419020 115419048 -8657124 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1465 1117 79 0 0 chr9 115419048 115419187 -8656985 - B1_Mus1 SINE Alu -9 139 1 8 1465 1957 148 130 13 chr9 115419187 115419461 -8656711 + MTC LTR MaLR 109 420 -1 8 1465 985 275 45 61 chr9 115419462 115419815 -8656357 + MTE2a LTR MaLR 45 402 -17 8 1465 341 304 48 69 chr9 115420117 115420262 -8655910 + B4A SINE B4 8 149 -143 8 1465 200 214 24 0 chr9 115420263 115420305 -8655867 + CT-rich Low_complexity Low_complexity 3 45 0 8 1465 616 191 0 48 chr9 115420306 115420493 -8655679 + C-rich Low_complexity Low_complexity 3 180 0 8 1465 340 304 7 45 chr9 115421239 115421394 -8654778 - ORR1C2 LTR MaLR -231 153 5 8 1465 1158 27 33 13 chr9 115421608 115421758 -8654414 - L1Md_F2 LINE L1 -12 6570 6418 8 1465 210 71 0 0 chr9 115422737 115422765 -8653407 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1465 1117 97 0 0 chr9 115422773 115422917 -8653255 - B1_Mus1 SINE Alu 0 148 5 8 1465 295 281 48 12 chr9 115423098 115423181 -8652991 + MER81 DNA AcHobo 14 99 -15 9 1465 547 304 55 6 chr9 115423403 115423585 -8652587 - B4A SINE B4 -2 290 100 9 1465 771 167 15 15 chr9 115423584 115423718 -8652454 - ORR1E LTR MaLR -225 134 1 9 1465 590 314 35 109 chr9 115423780 115424155 -8652017 + ORR1E LTR MaLR 13 359 0 9 1465 345 306 7 15 chr9 115425514 115425650 -8650522 + G-rich Low_complexity Low_complexity 1 135 0 9 1465 2768 151 149 32 chr9 115425658 115426275 -8649897 - RMER6C LTR ERVK 0 690 2 9 1465 421 274 22 39 chr9 115426297 115426479 -8649693 + GA-rich Low_complexity Low_complexity 1 179 0 9 1465 825 210 86 36 chr9 115427648 115427950 -8648222 + MTE2b LTR MaLR 5 378 -1 9 1465 294 73 0 0 chr9 115428028 115428069 -8648103 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 9 1465 255 227 78 26 chr9 115428613 115428690 -8647482 - ID4 SINE ID -2 81 1 9 1465 683 265 70 0 chr9 115428712 115428897 -8647275 - ID_B1 SINE B4 0 224 27 9 1465 396 0 0 0 chr9 115428919 115428963 -8647209 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1465 808 279 135 51 chr9 115429331 115429701 -8646471 - MTD LTR MaLR 0 419 19 9 1465 262 349 22 50 chr9 115429847 115429986 -8646186 - MIRc SINE MIR -108 160 26 9 1465 1950 201 31 48 chr9 115430565 115430983 -8645189 - MTD LTR MaLR -8 411 1 9 1465 914 124 0 7 chr9 115431927 115432081 -8644091 + (TCC)n Simple_repeat Simple_repeat 2 154 0 9 1465 292 325 79 60 chr9 115432235 115432451 -8643721 - MLT1K LTR MaLR -262 333 114 9 1465 213 269 0 0 chr9 115432811 115432863 -8643309 + CT-rich Low_complexity Low_complexity 2 53 0 9 1465 194 314 39 62 chr9 115433166 115433295 -8642877 + MIR3 SINE MIR 9 134 -74 9 1465 363 23 0 0 chr9 115435239 115435283 -8640889 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1465 443 336 36 60 chr9 115435303 115435596 -8640576 - B4 SINE B4 -16 276 23 9 1465 909 241 100 27 chr9 115435812 115436072 -8640100 - B4 SINE B4 -13 279 1 9 1465 319 344 60 48 chr9 115436164 115436332 -8639840 + LTR16B2 LTR ERVL 14 183 -279 9 1465 1326 225 104 53 chr9 115436333 115436709 -8639463 + Lx8 LINE L1 6749 7143 -330 9 1465 675 264 49 49 chr9 115437588 115437791 -8638381 + B3 SINE B2 2 204 -12 9 1465 29 0 0 0 chr9 115437854 115437883 -8638289 + AT_rich Low_complexity Low_complexity 1 29 0 9 1465 295 200 138 43 chr9 115438137 115438231 -8637941 + MTEb LTR MaLR 272 374 -5 9 1465 686 317 131 31 chr9 115438240 115438752 -8637420 + MLT1G1 LTR MaLR 1 579 0 9 1465 746 274 43 65 chr9 115439044 115439368 -8636804 + ORR1E LTR MaLR 1 317 -42 9 1465 420 97 0 0 chr9 115439382 115439444 -8636728 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1465 360 0 0 0 chr9 115439445 115439485 -8636687 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1465 713 259 5 69 chr9 115439522 115439744 -8636428 - B4A SINE B4 -31 261 60 9 1465 808 280 78 51 chr9 115440425 115440760 -8635412 + MT2A LTR ERVL 187 530 -3 9 1465 233 177 141 31 chr9 115441110 115441174 -8634998 - MER5A1 DNA MER1_type -57 109 39 9 1465 2069 190 82 35 chr9 115441223 115441619 -8634553 + RLTR20A LTR ERVK 29 435 -106 9 1465 351 0 0 0 chr9 115441619 115441658 -8634514 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1465 2069 190 82 35 chr9 115441658 115441751 -8634421 + RLTR20A LTR ERVK 436 541 0 9 1465 806 285 41 48 chr9 115442051 115442320 -8633852 + B4A SINE B4 17 283 -9 9 1465 332 386 7 0 chr9 115442324 115442464 -8633708 + (CA)n Simple_repeat Simple_repeat 2 142 0 9 1465 219 36 0 0 chr9 115442911 115442939 -8633233 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1465 294 50 0 0 chr9 115443915 115443955 -8632217 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 9 1465 410 272 58 14 chr9 115443965 115444103 -8632069 + B1F SINE Alu 1 144 -5 9 1465 198 0 0 0 chr9 115444197 115444219 -8631953 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 9 1465 279 54 0 0 chr9 115444337 115444374 -8631798 + (GA)n Simple_repeat Simple_repeat 1 37 0 9 1465 546 235 45 15 chr9 115444395 115444529 -8631643 - B3 SINE B2 -73 143 6 9 1465 741 128 9 0 chr9 115445452 115445561 -8630611 + ORR1C1 LTR MaLR 269 378 0 9 1465 937 302 31 54 chr9 115445810 115445905 -8630267 + B4A SINE B4 2 94 -198 9 1465 750 213 49 78 chr9 115445905 115446109 -8630063 + B3A SINE B2 1 198 0 9 1465 937 302 31 54 chr9 115446109 115446307 -8629865 + B4A SINE B4 95 288 -4 9 1465 282 307 85 45 chr9 115446321 115446522 -8629650 + ORR1D2 LTR MaLR 155 363 -7 9 1465 514 285 143 16 chr9 115447014 115447196 -8628976 + MTD LTR MaLR 20 224 -195 9 1465 244 273 30 15 chr9 115447706 115447773 -8628399 - MTD LTR MaLR -14 405 338 9 1465 1704 151 11 129 chr9 115447773 115448238 -8627934 + RMER17C LTR ERVK 1 410 0 9 1465 1988 134 178 45 chr9 115448239 115448757 -8627415 + RMER17C-int LTR ERVK 2644 3230 -8 9 1465 545 243 57 78 chr9 115448763 115448955 -8627217 + ORR1E LTR MaLR 167 354 -5 9 1465 1173 41 7 7 chr9 115449067 115449213 -8626959 - B1_Mus1 SINE Alu -1 147 2 9 1465 261 0 0 0 chr9 115449493 115449522 -8626650 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 9 1465 1124 76 7 0 chr9 115449644 115449789 -8626383 + B1_Mus2 SINE Alu 2 147 0 9 1465 288 122 0 35 chr9 115449792 115449877 -8626295 + A-rich Low_complexity Low_complexity 3 84 0 9 1465 351 245 99 81 chr9 115450080 115450098 -8626074 - PB1 SINE Alu -2 125 114 9 1465 180 0 0 0 chr9 115450098 115450118 -8626054 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 9 1465 425 304 0 0 chr9 115450118 115450210 -8625962 - PB1D10 SINE Alu -13 104 13 9 1465 389 20 0 20 chr9 115450270 115450321 -8625851 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1465 461 273 6 112 chr9 115450321 115450338 -8625834 - B3A SINE B2 -54 144 131 9 1465 3144 152 59 56 chr9 115450338 115450964 -8625208 - RLTR5_Mm LTR ERV1 0 628 1 9 1465 461 273 6 112 chr9 115450964 115451107 -8625065 - B3A SINE B2 -68 130 1 9 1465 688 301 139 62 chr9 115451353 115451959 -8624213 + RMER13A LTR ERVK 35 705 -203 9 1465 522 348 42 67 chr9 115452137 115452377 -8623795 + B4A SINE B4 2 235 -57 9 1465 726 106 0 0 chr9 115452381 115452513 -8623659 + (CA)n Simple_repeat Simple_repeat 2 133 0 9 1465 1108 177 22 39 chr9 115453386 115453684 -8622488 - RMER17C LTR ERVK 0 410 20 9 1465 295 182 26 0 chr9 115453688 115453765 -8622407 + CT-rich Low_complexity Low_complexity 2 80 0 9 1465 770 206 160 69 chr9 115453795 115453983 -8622189 - B3 SINE B2 -10 206 2 9 1465 1432 56 67 0 chr9 115454048 115454227 -8621945 - B2_Mm2 SINE B2 -4 191 1 9 1465 314 294 82 32 chr9 115454471 115454629 -8621543 + L1ME4a LINE L1 5838 6003 -121 9 1465 1200 41 0 40 chr9 115454766 115454918 -8621254 + B1_Mm SINE Alu 2 147 0 9 1465 272 27 27 0 chr9 115455419 115455456 -8620716 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1465 494 315 56 26 chr9 115455471 115455738 -8620434 - B4A SINE B4 -17 275 1 9 1465 243 0 0 0 chr9 115455836 115455863 -8620309 + (GA)n Simple_repeat Simple_repeat 1 27 0 9 1465 261 98 0 0 chr9 115456056 115456097 -8620075 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 9 1465 813 157 22 0 chr9 115456130 115456264 -8619908 - B1_Mus2 SINE Alu 0 147 11 9 1465 199 266 15 30 chr9 115456696 115456762 -8619410 + MIRc SINE MIR 86 150 -118 9 1465 579 271 15 55 chr9 115457616 115457815 -8618357 + MER2 DNA MER2_type 155 345 0 9 1465 294 0 43 21 chr9 115458620 115458667 -8617505 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 1465 760 66 53 18 chr9 115458668 115458837 -8617335 + (TCTA)n Simple_repeat Simple_repeat 2 176 0 9 1465 968 86 7 0 chr9 115459063 115459203 -8616969 + (TC)n Simple_repeat Simple_repeat 1 141 0 9 1465 531 278 193 23 chr9 115459232 115459538 -8616634 - MLT2D LTR ERVL -56 358 1 9 1465 236 185 98 12 chr9 115460146 115460228 -8615944 + (CACGT)n Simple_repeat Simple_repeat 5 93 0 9 1465 719 306 25 104 chr9 115460231 115460585 -8615587 - ORR1E LTR MaLR -33 326 1 9 1465 360 267 73 37 chr9 115461556 115461665 -8614507 + PB1D10 SINE Alu 5 117 0 9 1465 342 0 0 0 chr9 115462301 115462339 -8613833 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1465 1469 133 0 22 chr9 115463859 115464089 -8612083 - URR1B DNA MER1_type 0 225 1 9 1465 255 156 86 117 chr9 115464166 115464252 -8611920 - PB1D7 SINE Alu -1 148 50 9 1465 560 264 0 23 chr9 115464307 115464435 -8611737 - B1F SINE Alu -21 128 4 9 1465 343 287 43 0 chr9 115464973 115465067 -8611105 - MER103 DNA DNA -46 120 23 9 1465 1188 230 126 63 chr9 115465551 115465899 -8610273 - MTEa LTR MaLR -1 378 9 9 1465 261 0 0 0 chr9 115465961 115465990 -8610182 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1465 785 286 61 58 chr9 115467667 115467997 -8608175 + RMER15 LTR ERVL 245 575 0 9 1465 2819 145 0 5 chr9 115468065 115468488 -8607684 + MTC LTR MaLR 1 421 0 9 1465 961 283 79 24 chr9 115468489 115468858 -8607314 + MLT1B LTR MaLR 1 389 -1 9 1465 667 0 0 160 chr9 115469037 115469249 -8606923 + (CAGAA)n Simple_repeat Simple_repeat 2 179 0 9 1465 1144 0 37 66 chr9 115469283 115469526 -8606646 + (CAGAA)n Simple_repeat Simple_repeat 1 236 0 9 1465 726 43 77 47 chr9 115469583 115469752 -8606420 + (CAGAA)n Simple_repeat Simple_repeat 5 178 0 9 1465 252 0 0 0 chr9 115469753 115469781 -8606391 + (CAGAC)n Simple_repeat Simple_repeat 2 29 0 9 1465 936 237 14 48 chr9 115469783 115469991 -8606181 + B4 SINE B4 88 288 -4 9 1465 477 0 0 0 chr9 115470013 115470066 -8606106 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1465 363 268 35 195 chr9 115470902 115471245 -8604927 - Charlie4a DNA MER1_type -3 505 218 1 1465 299 323 21 0 chr9 115471658 115471754 -8604418 + MER5A1 DNA MER1_type 45 142 -24 1 1465 576 274 107 39 chr9 115471910 115472115 -8604057 - B4 SINE B4 -72 220 2 1 1465 1213 270 25 28 chr9 115473515 115473839 -8602333 + MTE2a LTR MaLR 57 379 0 1 1465 278 118 39 0 chr9 115473879 115473930 -8602242 + CT-rich Low_complexity Low_complexity 2 54 0 1 1465 884 141 59 199 chr9 115473948 115474160 -8602012 + RMER17C LTR ERVK 90 234 -176 1 183 3577 36 3 170 chr9 115474160 115474730 -8601442 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1466 884 141 59 199 chr9 115474730 115474888 -8601284 + RMER17C LTR ERVK 235 408 -2 1 1466 424 228 0 14 chr9 115474891 115475038 -8601134 + CT-rich Low_complexity Low_complexity 4 148 0 1 1466 543 69 0 0 chr9 115475024 115475096 -8601076 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 1466 186 143 0 0 chr9 115475883 115475918 -8600254 + (C)n Simple_repeat Simple_repeat 1 35 0 1 1466 1793 156 62 100 chr9 115476323 115476723 -8599449 + RLTR41 LTR ERV1 62 446 0 1 1466 1064 293 28 7 chr9 115476834 115477116 -8599056 + B4A SINE B4 2 289 -3 1 1466 328 371 13 0 chr9 115477904 115478055 -8598117 + L1ME3 LINE L1 5329 5481 -692 1 1466 1203 211 5 0 chr9 115478387 115478600 -8597572 - B3 SINE B2 -1 215 2 1 1466 23 0 0 0 chr9 115478607 115478630 -8597542 + AT_rich Low_complexity Low_complexity 1 23 0 1 1466 396 189 29 135 chr9 115478631 115478735 -8597437 + B4A SINE B4 200 292 0 1 1466 244 316 128 14 chr9 115478845 115478917 -8597255 + L1ME3 LINE L1 5884 5957 -205 1 1466 997 229 9 36 chr9 115478917 115479139 -8597033 + B3 SINE B2 1 216 0 1 1466 244 316 128 14 chr9 115479139 115479284 -8596888 + L1ME3 LINE L1 5958 6125 -37 1 1466 712 262 114 9 chr9 115479604 115479825 -8596347 + B4A SINE B4 2 244 -48 1 1466 438 187 0 0 chr9 115479826 115479917 -8596255 + GA-rich Low_complexity Low_complexity 4 94 0 1 1466 519 278 32 44 chr9 115481767 115481925 -8594247 + RSINE1 SINE B4 10 165 0 1 1466 379 262 83 0 chr9 115481888 115482033 -8594139 - RLTR21 LTR ERVK -321 1251 1095 1 1466 219 188 0 0 chr9 115482579 115482627 -8593545 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1466 1178 236 6 74 chr9 115482634 115482945 -8593227 - B4 SINE B4 -1 291 2 1 1466 249 280 0 131 chr9 115482948 115483055 -8593117 - PB1D10 SINE Alu 0 117 25 1 1466 181 222 36 36 chr9 115483826 115483882 -8592290 + MIR SINE MIR 93 148 -60 1 1466 775 192 6 6 chr9 115483930 115484108 -8592064 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1 1466 210 158 26 0 chr9 115484109 115484147 -8592025 + (TCTG)n Simple_repeat Simple_repeat 3 41 0 1 1466 300 154 0 0 chr9 115485077 115485129 -8591043 + (CAT)n Simple_repeat Simple_repeat 1 52 0 1 1466 262 152 17 17 chr9 115485685 115485745 -8590427 + GA-rich Low_complexity Low_complexity 4 63 0 1 1466 697 289 151 0 chr9 115485881 115486099 -8590073 - B4A SINE B4 -40 252 2 1 1466 876 194 10 77 chr9 115486290 115486410 -8589762 - B3A SINE B2 -16 182 67 1 1466 261 75 0 0 chr9 115486410 115486450 -8589722 + (CCA)n Simple_repeat Simple_repeat 3 42 0 1 1466 876 194 10 77 chr9 115486450 115486524 -8589648 - B3A SINE B2 -132 66 1 1 1466 418 272 114 88 chr9 115486740 115487037 -8589135 + L1MA9 LINE L1 5800 6117 -195 1 1466 3225 21 0 235 chr9 115487037 115487607 -8588565 - RLTR10C LTR ERVK 0 436 1 1 1466 418 272 114 88 chr9 115487607 115487652 -8588520 + L1MA9 LINE L1 6118 6151 -161 1 1466 921 246 182 13 chr9 115488739 115488820 -8587352 + MTEa LTR MaLR 8 107 -272 1 1466 3214 69 0 26 chr9 115488820 115489238 -8586934 + MTB_Mm LTR MaLR 1 407 0 1 1466 921 246 182 13 chr9 115489238 115489469 -8586703 + MTEa LTR MaLR 108 373 -6 1 1466 860 253 49 49 chr9 115490495 115490782 -8585390 + B4 SINE B4 2 288 -4 1 1466 2908 72 30 10 chr9 115491314 115491708 -8584464 + L1_Mus4 LINE L1 6230 6631 -5 1 1466 1753 181 118 11 chr9 115491905 115492269 -8583903 - MTD LTR MaLR -14 405 3 1 1466 222 37 0 0 chr9 115492426 115492453 -8583719 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1466 1101 280 69 25 chr9 115492629 115492992 -8583180 + MTEa LTR MaLR 1 379 0 1 1466 251 179 103 15 chr9 115493057 115493125 -8583047 + MLT1B LTR MaLR 37 110 -280 1 1466 1325 14 0 0 chr9 115493128 115493275 -8582897 + B1_Mus2 SINE Alu 1 147 0 1 1466 228 311 64 64 chr9 115493294 115493435 -8582737 + MLT1B LTR MaLR 91 231 -143 1 1466 863 258 208 10 chr9 115493769 115494067 -8582105 - ORR1E LTR MaLR 0 359 3 1 1466 746 313 5 0 chr9 115494702 115494897 -8581275 + B4 SINE B4 2 197 -95 1 1466 517 285 124 72 chr9 115495519 115495784 -8580388 - RMER15 LTR ERVL -17 558 280 1 1466 441 0 0 0 chr9 115495932 115495981 -8580191 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1466 725 202 0 0 chr9 115495981 115496100 -8580072 - B3A SINE B2 -78 120 2 1 1466 253 197 40 53 chr9 115496121 115496196 -8579976 - RMER15 LTR ERVL -500 75 2 1 1466 226 351 0 0 chr9 115496519 115496576 -8579596 - MIRm SINE MIR -129 147 91 1 1466 402 329 83 37 chr9 115496586 115496625 -8579547 + LTR33C LTR ERVL 10 44 -585 1 1466 3515 88 17 0 chr9 115496625 115497092 -8579080 + MT2C_Mm LTR ERVL 1 475 0 1 1466 402 332 71 59 chr9 115497092 115497362 -8578810 + LTR33C LTR ERVL 44 302 -361 1 1466 305 146 0 0 chr9 115497517 115497565 -8578607 + PB1D9 SINE Alu 36 83 -37 1 1466 221 373 0 0 chr9 115497798 115497873 -8578299 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1466 229 330 40 50 chr9 115497875 115497974 -8578198 - B4 SINE B4 0 292 195 1 1466 413 266 93 12 chr9 115498602 115498731 -8577441 + B4A SINE B4 4 134 -90 1 1466 584 174 11 0 chr9 115498776 115498954 -8577218 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1466 222 278 0 0 chr9 115499019 115499073 -8577099 + (TACTG)n Simple_repeat Simple_repeat 4 57 0 1 1466 215 139 28 0 chr9 115499080 115499116 -8577056 + (CAGTA)n Simple_repeat Simple_repeat 3 39 0 1 1466 424 251 111 35 chr9 115499138 115499270 -8576902 + PB1D10 SINE Alu 10 141 -8 1 1466 245 273 169 0 chr9 115499255 115499332 -8576840 - MTEa LTR MaLR -282 97 8 1 1466 589 268 159 12 chr9 115500330 115500568 -8575604 - B4A SINE B4 -16 276 4 1 1466 1089 312 83 41 chr9 115500874 115501032 -8575140 + MER90a LTR ERV1 70 239 -375 2 1466 464 256 25 8 chr9 115501032 115501150 -8575022 + PB1D7 SINE Alu 1 120 0 3 1466 1089 312 83 41 chr9 115501150 115501508 -8574664 + MER90a LTR ERV1 240 608 -6 2 1466 634 302 45 45 chr9 115502424 115502715 -8573457 - B4A SINE B4 0 292 2 4 1466 650 242 156 48 chr9 115502967 115503236 -8572936 + Lx8 LINE L1 7174 7471 -2 5 1466 753 226 12 24 chr9 115503746 115503914 -8572258 - ORR1E LTR MaLR -193 166 1 6 1466 1860 201 51 8 chr9 115504138 115504509 -8571663 - MTD LTR MaLR -14 405 19 7 1466 201 182 0 52 chr9 115504680 115504738 -8571434 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 8 1466 195 170 0 60 chr9 115504815 115504865 -8571307 + L3 LINE CR1 1635 1681 -2808 9 1466 342 0 0 0 chr9 115506154 115506192 -8569980 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1466 830 211 104 11 chr9 115506193 115506375 -8569797 + B3 SINE B2 9 207 -9 1 1466 499 256 22 14 chr9 115506562 115506701 -8569471 - B1F SINE Alu -9 140 1 1 1466 3181 170 142 19 chr9 115507557 115508240 -8567932 + Lx5 LINE L1 6284 7050 0 1 1466 234 279 0 0 chr9 115508290 115508376 -8567796 + CT-rich Low_complexity Low_complexity 4 89 0 1 1466 1057 162 65 5 chr9 115508554 115508753 -8567419 - B3 SINE B2 -5 211 1 1 1466 300 53 0 0 chr9 115509150 115509188 -8566984 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1466 1161 215 84 30 chr9 115511501 115511546 -8564626 - ORR1E LTR MaLR 0 359 313 1 1466 1120 240 78 45 chr9 115511546 115511904 -8564268 + ORR1D2 LTR MaLR 1 370 0 1 1466 1161 215 84 30 chr9 115511904 115511970 -8564202 - ORR1E LTR MaLR -47 312 238 1 1466 185 0 0 39 chr9 115511970 115511996 -8564176 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 1 1466 1161 215 84 30 chr9 115511996 115512218 -8563954 - ORR1E LTR MaLR -122 237 7 1 1466 418 304 53 20 chr9 115512745 115512896 -8563276 - RSINE1 SINE B4 0 165 10 2 1466 392 332 139 56 chr9 115513008 115513381 -8562791 - L1MC4a LINE L1 -1836 6046 5643 2 1466 231 36 0 0 chr9 115514026 115514054 -8562118 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1466 279 0 0 0 chr9 115514082 115514113 -8562059 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1466 210 297 95 0 chr9 115514312 115514386 -8561786 + MIRc SINE MIR 90 170 -98 2 1466 638 278 53 75 chr9 115515034 115515221 -8560951 - B3A SINE B2 -5 193 11 2 1466 987 233 32 0 chr9 115515319 115515508 -8560664 + B3 SINE B2 1 195 -21 2 1466 252 0 0 0 chr9 115515513 115515541 -8560631 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 2 1466 206 175 25 0 chr9 115515801 115515841 -8560331 - MIRc SINE MIR -143 125 85 2 1466 1257 229 68 37 chr9 115516315 115516696 -8559476 + MTD LTR MaLR 13 405 -14 2 1466 212 234 215 12 chr9 115516884 115516966 -8559206 + MIR SINE MIR 30 131 -137 3 1466 369 0 0 0 chr9 115516966 115517007 -8559165 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1466 756 68 0 0 chr9 115517047 115517150 -8559022 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 3 1466 768 268 32 60 chr9 115518653 115518871 -8557301 + MTE2a LTR MaLR 153 364 -15 3 1466 860 264 52 78 chr9 115519041 115519349 -8556823 + ORR1E LTR MaLR 3 302 -57 3 1466 433 268 9 9 chr9 115519521 115519626 -8556546 - RSINE1 SINE B4 -8 157 53 3 1466 884 255 29 54 chr9 115519626 115520068 -8556104 + RLTR20D LTR ERVK 1 568 0 3 1466 294 241 0 0 chr9 115520101 115520155 -8556017 - RSINE1 SINE B4 -108 57 4 3 1466 402 267 46 0 chr9 115520247 115520378 -8555794 + MER113 DNA MER1_type 309 445 -76 3 1466 1084 277 76 6 chr9 115521379 115521695 -8554477 + MTEb LTR MaLR 9 346 -33 3 1466 251 328 197 22 chr9 115521903 115522040 -8554132 + LTR33A_ LTR ERVL 48 208 -323 3 1466 241 271 26 168 chr9 115522260 115522415 -8553757 - Cheshire DNA MER1_type 0 2420 2288 4 1466 242 266 30 30 chr9 115522395 115522461 -8553711 - Cheshire DNA MER1_type -2331 89 24 4 1466 369 317 185 30 chr9 115523479 115523808 -8552364 + Charlie4a DNA MER1_type 6 385 -123 4 1466 784 221 64 39 chr9 115523797 115524034 -8552138 - MTEa LTR MaLR -4 375 153 4 1466 243 238 64 30 chr9 115524049 115524157 -8552015 - MTE2b LTR MaLR -85 274 172 4 1466 1071 254 22 41 chr9 115524125 115524396 -8551776 - MTE2b LTR MaLR -111 268 3 4 1466 393 191 124 0 chr9 115524407 115524496 -8551676 + B1_Mur1 SINE Alu 13 112 -37 4 1466 764 250 9 45 chr9 115524504 115524703 -8551469 + B3 SINE B2 1 194 -22 4 1466 315 0 0 0 chr9 115524703 115524738 -8551434 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1466 764 250 9 45 chr9 115524738 115524760 -8551412 + B3 SINE B2 195 213 -3 4 1466 445 250 16 70 chr9 115524767 115524896 -8551276 + Charlie4a DNA MER1_type 359 480 -28 4 1466 1092 283 70 32 chr9 115525837 115526278 -8549894 + L1M3 LINE L1 3332 3789 -2351 4 1466 394 276 64 105 chr9 115526387 115526606 -8549566 + L1M3 LINE L1 4080 4289 -1851 4 1466 294 311 97 0 chr9 115526657 115526760 -8549412 - PB1 SINE Alu 0 149 37 4 1466 2532 189 40 42 chr9 115527595 115528028 -8548144 + RLTR20A LTR ERVK 17 451 -90 4 1466 232 70 23 23 chr9 115528028 115528072 -8548100 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1466 2532 189 40 42 chr9 115528072 115528164 -8548008 + RLTR20A LTR ERVK 452 541 0 4 1466 229 182 63 134 chr9 115528165 115528203 -8547969 + MIRm SINE MIR 66 103 -173 5 1466 1477 236 95 16 chr9 115528203 115528591 -8547581 + MTD LTR MaLR 1 419 0 5 1466 229 182 63 134 chr9 115528591 115528679 -8547493 + MIRm SINE MIR 104 183 -93 5 1466 556 320 82 63 chr9 115529049 115529319 -8546853 + B4A SINE B4 2 276 -16 5 1466 225 282 0 0 chr9 115529300 115529339 -8546833 + RSINE1 SINE B4 113 151 -14 5 1466 728 282 114 19 chr9 115529698 115529962 -8546210 + RMER5 LTR ERV1 38 326 -208 5 1466 277 307 34 0 chr9 115530042 115530130 -8546042 + RMER5 LTR ERV1 443 533 -1 5 1466 1137 272 70 14 chr9 115530204 115530562 -8545610 + MTE2b LTR MaLR 2 379 0 5 1466 364 200 0 96 chr9 115530996 115531022 -8545150 + B4 SINE B4 216 234 -58 5 1466 937 182 307 16 chr9 115531022 115531279 -8544893 - IAPEY3_LTR LTR ERVK 0 332 1 5 1466 364 200 0 96 chr9 115531279 115531335 -8544837 + B4 SINE B4 235 290 -2 5 1466 582 15 0 0 chr9 115531396 115531463 -8544709 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1466 265 192 73 49 chr9 115531493 115531575 -8544597 + B1F SINE Alu 1 84 -65 6 1466 330 26 0 0 chr9 115531875 115531914 -8544258 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1466 219 253 27 0 chr9 115532167 115532242 -8543930 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 1466 851 255 19 9 chr9 115532917 115533127 -8543045 - ID_B1 SINE B4 -12 212 1 6 1466 333 172 189 33 chr9 115533260 115533350 -8542822 - PB1D10 SINE Alu -1 116 13 6 1466 342 0 0 0 chr9 115534878 115534916 -8541256 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1466 784 141 0 0 chr9 115535715 115535836 -8540336 - 5S rRNA rRNA 0 121 1 6 1466 874 222 52 39 chr9 115535846 115536076 -8540096 - MTEb LTR MaLR -143 236 4 6 1466 597 281 84 32 chr9 115536080 115536402 -8539770 + L1MD2 LINE L1 5143 5476 -883 6 1466 526 266 93 11 chr9 115536419 115536610 -8539562 - B3A SINE B2 -1 215 9 6 1466 333 298 15 15 chr9 115536625 115536758 -8539414 + L1MD2 LINE L1 5477 5609 -750 6 1466 1087 296 83 17 chr9 115536782 115537163 -8539009 + MTEa LTR MaLR 11 405 -14 7 1466 1098 260 151 94 chr9 115537163 115537867 -8538305 + L1MD2 LINE L1 5614 6357 -2 6 1466 21 0 0 0 chr9 115538527 115538548 -8537624 + AT_rich Low_complexity Low_complexity 1 21 0 7 1466 207 108 27 0 chr9 115538854 115538891 -8537281 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 7 1466 562 339 15 46 chr9 115538892 115539087 -8537085 - B3 SINE B2 -8 208 20 7 1466 218 234 77 15 chr9 115539976 115540041 -8536131 + PB1D7 SINE Alu 1 69 -51 7 1466 305 296 0 12 chr9 115540073 115540155 -8536017 + ID4 SINE ID 1 81 -2 7 1466 743 260 15 15 chr9 115540262 115540457 -8535715 - B3A SINE B2 -3 195 1 7 1466 1375 94 16 0 chr9 115541027 115541218 -8534954 - B2_Mm2 SINE B2 -1 194 1 7 1466 462 275 242 55 chr9 115541311 115541747 -8534425 - RMER15 LTR ERVL -16 559 4 7 1466 288 214 71 0 chr9 115541754 115541810 -8534362 - B1F1 SINE Alu -84 65 6 7 1466 562 307 88 25 chr9 115542873 115543147 -8533025 - B4A SINE B4 0 292 2 8 1466 676 216 130 22 chr9 115543211 115543396 -8532776 - B3 SINE B2 -10 206 2 8 1466 270 0 0 0 chr9 115543419 115543449 -8532723 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1466 560 270 29 47 chr9 115543450 115543621 -8532551 - B3A SINE B2 -30 168 1 8 1466 420 270 83 116 chr9 115544794 115545070 -8531102 + Lx8 LINE L1 7084 7350 -123 8 1466 243 254 17 0 chr9 115545914 115545973 -8530199 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1466 422 275 0 0 chr9 115545977 115546068 -8530104 - B4A SINE B4 -4 288 198 8 1466 359 89 18 0 chr9 115546068 115546124 -8530048 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 1466 594 299 101 5 chr9 115546124 115546312 -8529860 - B4A SINE B4 -86 206 1 8 1466 228 67 0 0 chr9 115546457 115546487 -8529685 + (GGGAA)n Simple_repeat Simple_repeat 5 34 0 8 1466 1609 176 149 77 chr9 115546921 115547310 -8528862 - MTD LTR MaLR -2 417 1 8 1466 888 37 0 0 chr9 115548015 115548123 -8528049 + (TA)n Simple_repeat Simple_repeat 1 108 0 9 1466 952 277 10 43 chr9 115548365 115548667 -8527505 - B4 SINE B4 0 292 1 9 1466 279 0 0 0 chr9 115548683 115548714 -8527458 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1466 294 290 32 0 chr9 115551758 115551851 -8524321 + (TATG)n Simple_repeat Simple_repeat 4 99 0 9 1466 398 264 141 103 chr9 115551930 115552276 -8523896 + ORR1E LTR MaLR 1 364 -6 9 1466 224 301 81 72 chr9 115552963 115552975 -8523197 - B1F SINE Alu -36 113 105 9 1466 411 21 0 0 chr9 115552975 115553023 -8523149 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 9 1466 272 306 92 0 chr9 115553023 115553121 -8523051 - PB1D10 SINE Alu -9 108 2 9 1466 514 303 46 0 chr9 115553121 115553191 -8522981 - ID SINE ID -136 88 12 9 1466 312 27 0 0 chr9 115553587 115553624 -8522548 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1466 859 241 85 0 chr9 115553624 115553848 -8522324 - B4A SINE B4 -36 256 14 1 1466 393 22 0 0 chr9 115554060 115554106 -8522066 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1466 770 225 205 16 chr9 115554853 115555097 -8521075 + B4A SINE B4 1 290 -2 1 1466 774 173 6 22 chr9 115556096 115556279 -8519893 + C-rich Low_complexity Low_complexity 1 180 0 1 1466 425 312 14 0 chr9 115556318 115556456 -8519716 - B1F SINE Alu -8 141 2 1 1466 306 306 90 0 chr9 115556612 115556723 -8519449 - RSINE1 SINE B4 -6 159 39 1 1466 379 274 137 0 chr9 115557395 115557497 -8518675 + RSINE1 SINE B4 41 156 -9 1 1466 574 322 96 29 chr9 115557545 115557817 -8518355 + B4 SINE B4 2 291 -1 1 1466 858 276 73 57 chr9 115558488 115558860 -8517312 - RMER5 LTR ERV1 -156 378 1 1 1466 745 263 11 0 chr9 115559182 115559361 -8516811 + B3A SINE B2 6 186 -12 1 1466 1000 212 33 14 chr9 115559432 115559642 -8516530 + B3 SINE B2 3 216 0 1 1466 519 95 0 0 chr9 115559763 115559837 -8516335 + (GGGGA)n Simple_repeat Simple_repeat 3 76 0 1 1466 470 248 196 29 chr9 115560732 115560936 -8515236 + RMER15 LTR ERVL 325 562 -13 1 1466 184 271 71 0 chr9 115561722 115561792 -8514380 + MIRb SINE MIR 125 199 -69 1 1466 842 259 19 19 chr9 115562321 115562537 -8513635 - B3 SINE B2 0 216 1 1 1466 250 246 0 0 chr9 115562964 115563029 -8513143 + GA-rich Low_complexity Low_complexity 1 65 0 1 1466 353 288 20 92 chr9 115563035 115563230 -8512942 + L1MB1 LINE L1 5751 5931 -237 1 1466 886 255 65 0 chr9 115563273 115563504 -8512668 - B4A SINE B4 -46 246 1 1 1466 941 271 131 12 chr9 115564438 115564759 -8511413 - ORR1E LTR MaLR 0 359 1 1 1466 766 213 59 30 chr9 115566144 115566381 -8509791 - MTD LTR MaLR 0 419 176 1 1466 700 267 69 44 chr9 115567146 115567420 -8508752 - L1MA5 LINE L1 -296 6004 5724 1 1466 684 119 0 0 chr9 115567422 115567540 -8508632 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1466 447 297 78 33 chr9 115567676 115567829 -8508343 - RSINE1 SINE B4 0 165 6 1 1466 1595 180 122 9 chr9 115568081 115568417 -8507755 - ORR1D1 LTR MaLR 0 374 1 1 1466 1958 262 57 11 chr9 115568418 115569063 -8507109 - L1MA5 LINE L1 -1383 4760 4086 1 1466 247 302 102 19 chr9 115569065 115569173 -8506999 + ORR1E LTR MaLR 11 127 -232 1 1466 297 197 0 0 chr9 115569369 115569435 -8506737 + CT-rich Low_complexity Low_complexity 1 66 0 1 1466 315 0 0 0 chr9 115569498 115569533 -8506639 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1466 539 155 164 0 chr9 115569567 115569683 -8506489 - MTD LTR MaLR -168 251 117 1 1466 620 252 126 16 chr9 115570650 115570904 -8505268 - B4A SINE B4 -10 282 1 1 1466 262 333 30 85 chr9 115571124 115571324 -8504848 + MTEa LTR MaLR 2 190 -189 1 1466 308 306 108 31 chr9 115571538 115571825 -8504347 - L1ME3A LINE L1 -212 5961 5653 1 1466 336 261 0 0 chr9 115571826 115571914 -8504258 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1466 3391 31 5 2 chr9 115571914 115572307 -8503865 - MTA_Mm LTR MaLR 0 396 3 1 1466 391 211 17 17 chr9 115572309 115572487 -8503685 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1466 549 209 17 0 chr9 115572522 115572769 -8503403 + (TG)n Simple_repeat Simple_repeat 1 251 0 1 1466 491 275 130 33 chr9 115573020 115573195 -8502977 + RLTR15 LTR ERVK 14 205 -154 1 1466 399 41 0 0 chr9 115573195 115573244 -8502928 + (GAATG)n Simple_repeat Simple_repeat 3 51 0 1 1466 491 275 130 33 chr9 115573244 115573369 -8502803 + RLTR15 LTR ERVK 206 343 -16 1 1466 270 281 69 109 chr9 115574144 115574454 -8501718 - RSINE1 SINE B4 0 292 1 1 1466 234 0 0 0 chr9 115575209 115575235 -8500937 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1466 802 158 7 35 chr9 115575235 115575379 -8500793 - B1_Mur4 SINE Alu -9 141 2 1 1466 486 0 0 0 chr9 115575475 115575529 -8500643 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1466 21 0 0 0 chr9 115576702 115576723 -8499449 + AT_rich Low_complexity Low_complexity 1 21 0 1 1466 195 129 0 0 chr9 115576736 115576767 -8499405 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1466 1038 256 101 29 chr9 115576813 115577300 -8498872 - L1_Mur3 LINE L1 -124 5756 5235 1 1466 30 0 0 0 chr9 115577555 115577585 -8498587 + AT_rich Low_complexity Low_complexity 1 30 0 1 1466 637 193 0 0 chr9 115577594 115577713 -8498459 + B3 SINE B2 1 119 -97 1 1466 375 226 24 12 chr9 115578568 115578653 -8497519 + B3A SINE B2 32 117 -81 1 1466 833 263 5 11 chr9 115578705 115578870 -8497302 + B3 SINE B2 2 167 -49 1 1466 360 0 0 0 chr9 115578870 115578910 -8497262 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1466 833 263 5 11 chr9 115578910 115578932 -8497240 + B3 SINE B2 168 188 -28 1 1466 438 20 0 0 chr9 115580196 115580247 -8495925 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1466 895 166 14 0 chr9 115580616 115580801 -8495371 + RMER16 LTR ERVK 1 275 -258 1 1466 1046 65 6 19 chr9 115580793 115580950 -8495222 + RMER16 LTR ERVK 379 533 0 1 1466 584 255 25 50 chr9 115582058 115582219 -8493953 - MTE2b LTR MaLR -10 369 213 1 1466 275 163 0 0 chr9 115582214 115582257 -8493915 - MTE2b LTR MaLR -124 255 213 1 1466 275 163 0 0 chr9 115582252 115582295 -8493877 - MTE2b LTR MaLR -124 255 213 1 1466 275 163 0 0 chr9 115582290 115582333 -8493839 - MTE2b LTR MaLR -124 255 213 1 1466 275 163 0 0 chr9 115582328 115582371 -8493801 - MTE2b LTR MaLR -124 255 213 1 1466 292 116 0 0 chr9 115582366 115582409 -8493763 - MTE2b LTR MaLR -124 255 213 1 1466 292 116 0 0 chr9 115582404 115582447 -8493725 - MTE2b LTR MaLR -124 255 213 1 1466 284 139 0 0 chr9 115582442 115582485 -8493687 - MTE2b LTR MaLR -124 255 213 1 1466 275 163 0 0 chr9 115582480 115582523 -8493649 - MTE2b LTR MaLR -124 255 213 1 1466 247 139 0 65 chr9 115582555 115582601 -8493571 - MTE2b LTR MaLR -124 255 213 1 1466 250 229 16 0 chr9 115582596 115582657 -8493515 - MTE2b LTR MaLR -124 255 194 1 1466 1182 215 16 0 chr9 115582637 115582888 -8493284 - MTE2b LTR MaLR -124 255 1 1 1466 436 314 38 41 chr9 115583139 115583484 -8492688 + L1MC LINE L1 5480 5820 -2062 1 1466 24 0 0 0 chr9 115583588 115583612 -8492560 + AT_rich Low_complexity Low_complexity 1 24 0 1 1466 527 306 51 23 chr9 115583775 115583952 -8492220 + B3A SINE B2 1 182 -16 1 1466 614 290 82 37 chr9 115584131 115584400 -8491772 - B4A SINE B4 -4 288 8 1 1466 345 326 92 16 chr9 115585608 115585923 -8490249 + L1M7 LINE L1 425 763 -5455 1 1466 593 308 59 73 chr9 115586118 115586337 -8489835 - MLT1A0 LTR MaLR -13 352 137 1 1466 987 204 52 231 chr9 115586337 115586795 -8489377 + MTEb LTR MaLR 1 376 -3 1 1466 593 308 59 73 chr9 115586795 115586932 -8489240 - MLT1A0 LTR MaLR -229 136 1 1 1466 599 232 58 6 chr9 115587073 115587246 -8488926 + B3A SINE B2 1 182 -16 1 1466 2579 61 0 58 chr9 115587459 115587806 -8488366 - ORR1A2 LTR MaLR 0 327 1 1 1466 436 268 22 73 chr9 115588258 115588395 -8487777 + MER58A DNA MER1_type 11 140 -84 1 1466 197 59 0 56 chr9 115588851 115588887 -8487285 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1466 351 0 0 0 chr9 115588931 115588970 -8487202 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1466 268 250 14 0 chr9 115589014 115589086 -8487086 - RSINE1 SINE B4 -90 75 3 1 1466 204 97 0 0 chr9 115589465 115589496 -8486676 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 1 1466 317 372 19 14 chr9 115589562 115589769 -8486403 + MIR SINE MIR 52 259 -3 1 1466 275 234 133 60 chr9 115590391 115590541 -8485631 - MTEb LTR MaLR -13 366 206 1 1466 413 236 0 0 chr9 115590556 115590645 -8485527 - MTEb LTR MaLR -270 109 21 1 1466 27 49 0 0 chr9 115591336 115591377 -8484795 + AT_rich Low_complexity Low_complexity 1 41 0 1 1466 2794 280 80 25 chr9 115591830 115592817 -8483355 - Lx8 LINE L1 -1 7472 6432 1 1466 307 160 24 85 chr9 115593153 115593235 -8482937 + ORR1B2 LTR MaLR 1 77 -290 1 1466 1732 136 60 16 chr9 115593235 115593549 -8482623 + ORR1B2 LTR MaLR 40 367 0 1 1466 247 0 127 0 chr9 115593551 115593614 -8482558 + (CAGG)n Simple_repeat Simple_repeat 2 72 0 1 1466 461 247 0 10 chr9 115593617 115593715 -8482457 + B1F2 SINE Alu 39 135 -14 1 1466 333 100 0 0 chr9 115593716 115593766 -8482406 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 1 1466 1366 236 48 42 chr9 115594104 115594481 -8481691 - MTEa LTR MaLR 0 379 1 1 1466 246 256 68 53 chr9 115595178 115595243 -8480929 - L1M5 LINE L1 -369 5871 5807 1 1466 2100 118 45 3 chr9 115595243 115595557 -8480615 + ORR1A2 LTR MaLR 1 327 0 1 1466 246 256 68 53 chr9 115595557 115595623 -8480549 - L1M5 LINE L1 -434 5806 5738 1 1466 929 113 27 0 chr9 115595641 115595791 -8480381 + ORR1A2 LTR MaLR 16 169 -158 1 1466 394 299 100 12 chr9 115595813 115596015 -8480157 - L1M5 LINE L1 -497 5676 5458 1 1466 1134 256 19 11 chr9 115596655 115596924 -8479248 - B4A SINE B4 -17 275 5 1 1466 415 305 24 0 chr9 115596928 115597074 -8479098 - B1F SINE Alu 0 149 1 1 1466 327 184 118 0 chr9 115597135 115597211 -8478961 - Lx9 LINE L1 -465 7179 7095 1 1466 444 19 0 0 chr9 115598112 115598165 -8478007 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1466 1151 216 78 75 chr9 115598474 115598845 -8477327 + MTEa LTR MaLR 1 372 -7 1 1466 304 271 0 0 chr9 115598977 115599047 -8477125 + ID4 SINE ID 1 70 -13 1 1466 298 306 54 9 chr9 115599133 115599245 -8476927 + MIR SINE MIR 74 190 -72 1 1466 587 279 40 28 chr9 115599598 115599795 -8476377 + B3A SINE B2 1 191 -25 1 1466 582 235 0 8 chr9 115600118 115600238 -8475934 + RSINE1 SINE B4 3 121 -44 1 1466 396 88 0 0 chr9 115600249 115600306 -8475866 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1466 909 255 115 13 chr9 115600604 115600773 -8475399 - ORR1E LTR MaLR 0 379 177 1 1466 450 0 0 0 chr9 115600773 115600823 -8475349 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1466 909 252 130 10 chr9 115600823 115600976 -8475196 - ORR1E LTR MaLR -183 176 5 1 1466 243 137 19 19 chr9 115601322 115601374 -8474798 - MIRc SINE MIR -32 236 185 1 1466 791 241 5 44 chr9 115601749 115601953 -8474219 - B3A SINE B2 -1 197 2 1 1466 212 175 0 0 chr9 115601961 115602042 -8474130 + (TTTA)n Simple_repeat Simple_repeat 1 81 0 1 1466 351 0 0 0 chr9 115602044 115602083 -8474089 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1466 322 265 14 96 chr9 115602086 115602232 -8473940 - RSINE1 SINE B4 -19 146 13 1 1466 725 172 7 0 chr9 115602813 115602964 -8473208 + (TCCA)n Simple_repeat Simple_repeat 1 152 0 1 1466 351 0 0 0 chr9 115603174 115603213 -8472959 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1466 261 0 0 0 chr9 115603213 115603241 -8472931 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1466 993 55 0 0 chr9 115603851 115603979 -8472193 + (CA)n Simple_repeat Simple_repeat 2 129 0 1 1466 309 247 26 13 chr9 115604195 115604273 -8471899 - ID4 SINE ID -4 79 1 1 1466 557 298 146 24 chr9 115604754 115604988 -8471184 + B4A SINE B4 1 271 -21 2 1466 324 0 0 0 chr9 115604988 115605024 -8471148 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1466 557 298 146 24 chr9 115605024 115605043 -8471129 + B4A SINE B4 272 285 -7 2 1466 739 46 9 44 chr9 115605084 115605197 -8470975 + L1_Mus1 LINE L1 6459 6567 0 2 183 1501 295 126 44 chr9 115605296 115606327 -8469845 + L1ME2z LINE L1 5259 6374 -70 2 1467 441 0 0 0 chr9 115606722 115606771 -8469401 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1467 558 311 12 52 chr9 115606772 115606945 -8469227 - B3A SINE B2 -30 168 3 2 1467 235 296 56 0 chr9 115607101 115607172 -8469000 - ID2 SINE ID -2 81 7 2 1467 458 285 56 0 chr9 115607540 115607684 -8468488 + B4 SINE B4 2 153 -139 2 1467 396 284 73 9 chr9 115607682 115607792 -8468380 + RSINE1 SINE B4 24 140 -25 2 1467 689 263 20 56 chr9 115608393 115608590 -8467582 - B3A SINE B2 -4 194 5 2 1467 606 229 116 5 chr9 115608610 115608808 -8467364 - ID_B1 SINE B4 -3 221 2 2 1467 831 238 16 6 chr9 115609156 115609338 -8466834 + B3 SINE B2 24 207 -9 2 1467 311 299 93 31 chr9 115609665 115609858 -8466314 - L1MC LINE L1 -2697 3449 3245 2 1467 311 328 67 7 chr9 115610947 115610975 -8465197 + B1F1 SINE Alu 1 143 -6 2 1467 526 224 19 0 chr9 115610975 115611082 -8465090 + ID_B1 SINE B4 110 218 -6 2 1467 5314 105 13 4 chr9 115611626 115612371 -8463801 - Lx4A LINE L1 0 7058 6307 2 1467 3265 107 8 10 chr9 115612371 115612860 -8463312 + Lx4A LINE L1 5819 6306 -752 2 1467 647 275 102 33 chr9 115613143 115613438 -8462734 + MER44A DNA MER2_type 32 339 0 2 1467 344 269 43 56 chr9 115613494 115613647 -8462525 + MLT1G1 LTR MaLR 231 522 -57 2 1467 958 275 17 32 chr9 115613899 115614162 -8462010 + B4 SINE B4 25 292 0 2 1467 563 263 68 121 chr9 115614667 115614974 -8461198 + B4 SINE B4 1 291 -1 2 1467 1028 107 0 0 chr9 115615105 115615245 -8460927 + B1_Mus1 SINE Alu 2 141 -7 2 1467 284 65 43 0 chr9 115615249 115615295 -8460877 + (GAAAA)n Simple_repeat Simple_repeat 1 48 0 2 1467 26 30 0 0 chr9 115615704 115615737 -8460435 + AT_rich Low_complexity Low_complexity 1 33 0 2 1467 860 154 37 0 chr9 115615740 115615876 -8460296 - B1_Mur3 SINE Alu -6 143 3 2 1467 1062 0 0 0 chr9 115615975 115616093 -8460079 + (CATATA)n Simple_repeat Simple_repeat 4 121 0 2 1467 273 356 38 38 chr9 115616270 115616480 -8459692 - Charlie13a DNA Charlie -431 1083 874 2 1467 760 243 101 34 chr9 115616538 115616806 -8459366 - B4 SINE B4 0 292 7 2 1467 691 356 74 25 chr9 115617301 115617543 -8458629 - LTR37B LTR ERV1 -2 466 204 2 1467 655 264 228 47 chr9 115617543 115618016 -8458156 - MER89 LTR ERV1 0 559 1 2 1467 691 356 74 25 chr9 115618016 115618205 -8457967 - LTR37B LTR ERV1 -265 203 14 2 1467 225 377 17 34 chr9 115618381 115618499 -8457673 + LTR79 LTR ERVL 391 506 -21 2 1467 327 320 88 84 chr9 115618522 115618761 -8457411 - Charlie13a DNA Charlie -1156 358 119 2 1467 480 229 119 50 chr9 115618939 115619141 -8457031 - B3 SINE B2 0 216 1 2 1467 1452 40 0 0 chr9 115619918 115620145 -8456027 + (TG)n Simple_repeat Simple_repeat 1 227 0 2 1467 2475 92 3 0 chr9 115620457 115620782 -8455390 - ORR1A2 LTR MaLR -1 326 1 2 1467 616 297 161 60 chr9 115621205 115621689 -8454483 - MT2A LTR ERVL 0 533 1 2 1467 242 302 47 0 chr9 115621759 115621845 -8454327 - L1M5 LINE L1 -274 5899 5810 2 1467 393 351 38 117 chr9 115622340 115622630 -8453542 - B4 SINE B4 0 292 26 2 1467 233 304 50 42 chr9 115622893 115623013 -8453159 + LTR48 LTR ERV1 3 123 -664 2 1467 253 234 49 49 chr9 115623013 115623094 -8453078 + Lx7 LINE L1 5655 5735 -1961 2 1467 181 250 12 24 chr9 115623105 115623187 -8452985 + (TATG)n Simple_repeat Simple_repeat 3 83 0 2 1467 333 235 23 0 chr9 115623331 115623463 -8452709 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 2 1467 222 98 19 38 chr9 115623469 115623522 -8452650 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1467 496 95 24 0 chr9 115623571 115623655 -8452517 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 2 1467 198 0 0 0 chr9 115623923 115623945 -8452227 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1467 1330 262 122 6 chr9 115624276 115624629 -8451543 - MTD LTR MaLR 0 419 26 2 1467 281 233 26 40 chr9 115624896 115624972 -8451200 + MER34A LTR ERV1 30 104 -467 2 1467 861 219 117 26 chr9 115625638 115625868 -8450304 + B4 SINE B4 14 264 -28 2 1467 325 346 68 32 chr9 115626172 115626450 -8449722 - B4A SINE B4 0 292 5 2 1467 571 290 130 4 chr9 115627615 115627861 -8448311 + B4A SINE B4 5 281 -11 2 1467 342 0 0 0 chr9 115627911 115627949 -8448223 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1467 235 253 85 37 chr9 115628269 115628351 -8447821 + PB1D9 SINE Alu 34 119 -1 2 1467 346 304 88 0 chr9 115628451 115628553 -8447619 + B4A SINE B4 182 292 0 2 1467 433 350 46 32 chr9 115629186 115629423 -8446749 + MTB_Mm LTR MaLR 1 239 -161 2 1467 295 200 0 0 chr9 115629763 115629823 -8446349 + L1MC5 LINE L1 7831 7890 -71 2 1467 236 273 0 0 chr9 115629909 115629975 -8446197 + L1M5 LINE L1 5711 5776 -418 2 1467 421 240 100 50 chr9 115630475 115630518 -8445654 - B2_Mm2 SINE B2 -4 191 138 2 1467 1835 186 39 11 chr9 115630518 115630882 -8445290 + ORR1D1 LTR MaLR 1 374 0 2 1467 366 23 0 0 chr9 115630882 115630925 -8445247 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1467 534 217 132 18 chr9 115630925 115631060 -8445112 - B3A SINE B2 -54 144 3 2 1467 414 57 0 0 chr9 115631078 115631131 -8445041 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1467 429 226 0 23 chr9 115631180 115631266 -8444906 - B1_Mur2 SINE Alu -46 103 20 2 1467 803 316 27 53 chr9 115631450 115631788 -8444384 - RMER5 LTR ERV1 -33 501 173 2 1467 1609 136 80 28 chr9 115632288 115632614 -8443558 + RMER17C LTR ERVK 1 343 -67 2 1467 647 69 0 22 chr9 115632615 115632704 -8443468 - B1_Mus1 SINE Alu -61 87 1 2 1467 225 250 184 20 chr9 115632618 115632716 -8443456 - RLTR25A LTR ERVK -544 559 446 2 1467 839 265 21 11 chr9 115633941 115634132 -8442040 + B3A SINE B2 6 198 0 2 1467 485 248 13 63 chr9 115634590 115634749 -8441423 + RLTR14 LTR ERV1 232 382 0 2 1467 225 304 0 0 chr9 115634865 115634921 -8441251 + L1MD LINE L1 5732 5787 -572 2 1467 345 305 117 51 chr9 115634967 115635164 -8441008 + L1ME4a LINE L1 5810 6019 -105 2 1467 184 290 28 28 chr9 115636701 115636772 -8439400 - L2 LINE L2 -1626 1793 1723 2 1467 792 324 55 55 chr9 115636803 115637182 -8438990 + MTEa LTR MaLR 1 379 0 2 1467 221 57 29 0 chr9 115637498 115637533 -8438639 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 1467 228 274 26 40 chr9 115637801 115637877 -8438295 - MLT1B LTR MaLR -305 85 11 2 1467 426 281 136 10 chr9 115638112 115638310 -8437862 - LTR33C LTR ERVL -403 226 4 2 1467 343 361 53 32 chr9 115638465 115638654 -8437518 - MIRb SINE MIR -7 261 69 2 1467 332 324 57 30 chr9 115638643 115638867 -8437305 - MIR SINE MIR 0 262 40 2 1467 285 325 84 84 chr9 115638874 115639089 -8437083 + MLT1I LTR MaLR 130 344 -67 2 1467 571 224 17 0 chr9 115639382 115639498 -8436674 + MTEa LTR MaLR 193 310 -69 2 1467 21 0 0 0 chr9 115639504 115639525 -8436647 + AT_rich Low_complexity Low_complexity 1 21 0 2 1467 7005 42 1 4 chr9 115639525 115640367 -8435805 + L1Md_F2 LINE L1 5738 6577 -5 2 1467 863 215 113 0 chr9 115640368 115640554 -8435618 - B3 SINE B2 -3 213 7 2 1467 722 283 5 65 chr9 115640782 115640982 -8435190 + MER58A DNA MER1_type 37 224 0 2 1467 258 388 10 10 chr9 115641782 115641881 -8434291 + MER115 DNA Tip100 152 250 -443 2 1467 185 178 22 0 chr9 115642361 115642406 -8433766 + CT-rich Low_complexity Low_complexity 4 49 0 2 1467 302 226 32 0 chr9 115642411 115642473 -8433699 - ID4_ SINE ID 0 83 20 2 1467 767 207 20 7 chr9 115642466 115642612 -8433560 - RMER16 LTR ERVK -385 148 1 2 1467 857 267 147 4 chr9 115642655 115642907 -8433265 + MTE2b LTR MaLR 5 292 -87 2 1467 525 105 0 0 chr9 115642984 115643070 -8433102 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1467 241 289 0 126 chr9 115643871 115643958 -8432214 + MER63B DNA AcHobo 322 397 -39 2 1467 360 0 0 0 chr9 115644042 115644082 -8432090 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1467 432 0 0 0 chr9 115644082 115644129 -8432043 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1467 719 320 48 92 chr9 115644145 115644417 -8431755 - B4A SINE B4 -6 286 27 2 1467 624 307 72 19 chr9 115644424 115644633 -8431539 + MTD LTR MaLR 1 220 -199 2 1467 7992 132 42 21 chr9 115644633 115646597 -8429575 + Lx5 LINE L1 5031 7050 0 2 1467 617 245 89 16 chr9 115646640 115646807 -8429365 + MTD LTR MaLR 225 375 -44 2 1467 195 42 0 0 chr9 115646969 115646993 -8429179 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1467 353 246 0 7 chr9 115647228 115647363 -8428809 + (CA)n Simple_repeat Simple_repeat 1 134 0 2 1467 487 280 140 53 chr9 115649208 115649523 -8426649 + ORR1E LTR MaLR 1 366 -13 2 1467 225 324 85 64 chr9 115649697 115649885 -8426287 + LTR16C LTR ERVL 237 428 -61 2 1467 1196 255 86 14 chr9 115649991 115650341 -8425831 - MTEb LTR MaLR -2 377 3 2 1467 280 281 11 57 chr9 115650608 115650785 -8425387 + (CCCA)n Simple_repeat Simple_repeat 2 170 0 2 1467 243 0 0 0 chr9 115651370 115651397 -8424775 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1467 358 148 296 61 chr9 115651551 115651666 -8424506 - B1_Mus1 SINE Alu -1 147 6 2 1467 395 276 71 0 chr9 115651719 115651846 -8424326 + MER58A DNA MER1_type 47 182 -42 3 1467 219 330 54 85 chr9 115651855 115651984 -8424188 + L2c LINE L2 3259 3383 -4 3 1467 356 287 11 0 chr9 115652554 115652641 -8423531 + B3A SINE B2 41 128 -70 3 1467 3807 62 20 2 chr9 115652786 115653273 -8422899 + LTRIS2 LTR ERV1 69 564 0 3 1467 427 262 118 101 chr9 115653878 115654056 -8422116 + B3A SINE B2 1 181 -17 3 1467 1064 230 0 14 chr9 115654079 115654295 -8421877 + ID_B1 SINE B4 2 214 -10 3 1467 436 257 51 35 chr9 115654800 115655097 -8421075 - ORR1E LTR MaLR 0 379 3 3 1467 218 149 30 0 chr9 115655430 115655497 -8420675 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 3 1467 222 254 0 35 chr9 115655497 115655554 -8420618 + CT-rich Low_complexity Low_complexity 1 55 0 3 1467 400 205 0 12 chr9 115656032 115656116 -8420056 - B3A SINE B2 -115 83 1 3 1467 302 184 51 26 chr9 115656271 115656349 -8419823 + (TATG)n Simple_repeat Simple_repeat 2 81 0 3 1467 300 269 11 23 chr9 115656352 115656527 -8419645 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 3 1467 406 202 83 85 chr9 115657409 115657602 -8418570 + B4A SINE B4 7 291 -1 3 1467 573 181 0 0 chr9 115657611 115657744 -8418428 + (CA)n Simple_repeat Simple_repeat 1 133 0 3 1467 206 288 16 33 chr9 115658439 115658500 -8417672 + MIR SINE MIR 115 174 -88 3 1467 775 351 63 30 chr9 115658771 115659200 -8416972 - MER97c DNA MER1_type? -340 750 308 3 1467 548 267 119 36 chr9 115659534 115659728 -8416444 + MTEa LTR MaLR 1 210 -169 3 1467 603 331 92 32 chr9 115659628 115659976 -8416196 + MT2A LTR ERVL 107 548 -53 3 1467 534 70 0 0 chr9 115659976 115660047 -8416125 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1467 225 291 133 48 chr9 115660047 115660084 -8416088 + MT2A LTR ERVL 549 600 -1 3 1467 388 298 159 40 chr9 115660138 115660157 -8416015 - MER97c DNA MER1_type? -774 316 302 3 1467 2180 155 225 75 chr9 115660157 115660757 -8415415 + RMER6C LTR ERVK 1 690 0 3 1467 388 298 159 40 chr9 115660757 115660964 -8415208 - MER97c DNA MER1_type? -789 301 63 3 1467 374 216 114 107 chr9 115661061 115661201 -8414971 - MTEa LTR MaLR -5 374 234 3 1467 1009 136 11 0 chr9 115661579 115661756 -8414416 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 3 1467 240 330 30 89 chr9 115661856 115662092 -8414080 + HAL1b LINE L1 957 1178 -831 3 1467 414 0 0 0 chr9 115662843 115662889 -8413283 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1467 396 302 0 0 chr9 115663005 115663111 -8413061 - B3A SINE B2 -18 180 75 3 1467 227 217 0 0 chr9 115663109 115663155 -8413017 + B1_Mur2 SINE Alu 104 149 0 3 1467 599 172 20 0 chr9 115663163 115663262 -8412910 + B3 SINE B2 1 101 -115 3 1467 327 270 124 0 chr9 115663258 115663347 -8412825 - B3 SINE B2 -57 159 60 3 1467 3469 33 2 0 chr9 115664160 115664555 -8411617 - MTA_Mm LTR MaLR 0 396 1 3 1467 4044 211 51 41 chr9 115664998 115665482 -8410690 - RCHARR1 DNA MER1_type -18 956 486 3 1467 1089 214 0 14 chr9 115665482 115665700 -8410472 - B3 SINE B2 -1 215 1 3 1467 4044 211 51 41 chr9 115665700 115666156 -8410016 - RCHARR1 DNA MER1_type -489 485 7 3 1467 769 270 68 18 chr9 115667266 115667485 -8408687 + MTEb LTR MaLR 94 323 -56 3 1467 449 261 59 16 chr9 115668040 115668206 -8407966 - MLT1D LTR MaLR -80 425 229 3 1467 375 202 17 9 chr9 115669123 115669238 -8406934 + (CACCC)n Simple_repeat Simple_repeat 5 120 0 3 1467 918 135 11 6 chr9 115669238 115669417 -8406755 + (CATCC)n Simple_repeat Simple_repeat 1 180 0 3 1467 318 152 0 0 chr9 115669423 115669482 -8406690 + (CACCC)n Simple_repeat Simple_repeat 2 60 0 3 1467 431 294 52 26 chr9 115671254 115671446 -8404726 + B3A SINE B2 1 197 -1 3 1467 402 275 37 30 chr9 115672034 115672169 -8404003 + B1F1 SINE Alu 1 136 -13 3 1467 754 220 67 48 chr9 115672175 115672443 -8403729 + B4 SINE B4 1 273 -19 3 1467 297 89 0 0 chr9 115672456 115672501 -8403671 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1467 453 81 0 0 chr9 115672659 115672721 -8403451 + (CAT)n Simple_repeat Simple_repeat 1 62 0 3 1467 219 306 71 0 chr9 115673368 115673453 -8402719 + MIR SINE MIR 78 168 -94 3 1467 211 72 0 45 chr9 115673618 115673662 -8402510 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1467 685 245 26 6 chr9 115673670 115673826 -8402346 - B3A SINE B2 -37 161 3 3 1467 183 304 87 19 chr9 115673893 115673997 -8402175 + MIRm SINE MIR 21 131 -145 3 1467 716 198 100 18 chr9 115674191 115674391 -8401781 + ORR1D1 LTR MaLR 1 209 -150 3 1467 476 176 4 60 chr9 115674400 115674879 -8401293 + (TG)n Simple_repeat Simple_repeat 1 452 0 3 1467 465 184 29 0 chr9 115674937 115675040 -8401132 + ORR1D1 LTR MaLR 268 373 -1 3 1467 1079 274 33 23 chr9 115675049 115675352 -8400820 + MTEa LTR MaLR 73 378 -1 3 1467 1501 142 5 144 chr9 115676108 115676504 -8399668 - Lx7 LINE L1 0 7696 7356 3 1467 237 92 79 0 chr9 115676508 115676584 -8399588 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1467 1405 34 6 6 chr9 115676612 115676792 -8399380 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1467 424 214 12 0 chr9 115676809 115676893 -8399279 - Lx7 LINE L1 -363 7333 7249 3 1467 284 189 58 78 chr9 115676910 115677013 -8399159 - L1ME2 LINE L1 -43 6121 6021 3 1467 333 0 0 0 chr9 115677347 115677384 -8398788 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1467 653 276 67 26 chr9 115677416 115677684 -8398488 - B4A SINE B4 -12 280 2 3 1467 635 294 51 70 chr9 115678237 115678551 -8397621 + MER2 DNA MER2_type 12 319 -26 3 1467 1476 249 32 27 chr9 115678674 115679082 -8397090 + MTD LTR MaLR 10 419 0 3 1467 483 210 82 92 chr9 115679086 115679270 -8396902 + B3A SINE B2 17 198 0 3 1467 405 244 0 11 chr9 115680392 115680483 -8395689 + B4A SINE B4 185 274 -18 3 1467 560 167 39 14 chr9 115681412 115681700 -8394472 + (TG)n Simple_repeat Simple_repeat 1 295 0 3 1467 727 212 69 17 chr9 115681700 115681873 -8394299 - B3A SINE B2 -16 182 1 3 1467 728 312 68 25 chr9 115682229 115682508 -8393664 + B4 SINE B4 2 292 0 3 1467 31 0 0 0 chr9 115684076 115684107 -8392065 + AT_rich Low_complexity Low_complexity 1 31 0 3 1467 384 307 29 24 chr9 115684228 115684398 -8391774 - Lx8 LINE L1 -148 7325 7155 3 1467 303 219 31 47 chr9 115685278 115685499 -8390673 + (CA)n Simple_repeat Simple_repeat 1 217 0 3 1467 300 188 38 76 chr9 115685499 115685552 -8390620 + (CATA)n Simple_repeat Simple_repeat 3 56 0 3 1467 242 124 43 33 chr9 115685590 115685682 -8390490 + (CA)n Simple_repeat Simple_repeat 1 93 0 3 1467 374 173 22 29 chr9 115685799 115685936 -8390236 + (CA)n Simple_repeat Simple_repeat 2 137 0 3 1467 1134 263 17 90 chr9 115686174 115686561 -8389611 - ORR1E LTR MaLR -3 376 1 3 1467 219 195 162 38 chr9 115687273 115687353 -8388819 - MIR SINE MIR -67 141 52 3 1467 883 292 103 3 chr9 115687563 115687882 -8388290 - MTD LTR MaLR -21 398 48 3 1467 249 286 71 10 chr9 115688648 115688747 -8387425 + MER5B DNA MER1_type 42 146 -32 3 1467 505 250 162 27 chr9 115688992 115689177 -8386995 + ID_B1 SINE B4 1 210 -14 3 1467 1111 90 63 1 chr9 115689298 115689490 -8386682 - ORR1A3 LTR MaLR 0 394 155 3 1467 2725 127 112 42 chr9 115689739 115690283 -8385889 - RMER19C LTR ERVK -29 582 1 3 1467 3075 73 29 0 chr9 115690370 115690779 -8385393 - BGLII LTR ERVK 0 421 1 3 1467 3577 177 117 13 chr9 115690780 115691713 -8384459 - MYSERV16_I-int LTR ERVK 0 2326 1297 3 1467 3281 194 107 88 chr9 115691703 115691797 -8384375 - RMER3D-int LTR ERVK -1146 1696 1606 3 1467 3921 51 44 20 chr9 115691797 115692297 -8383875 + RLTR1B LTR ERV1 1 512 0 3 1467 3281 194 107 88 chr9 115692297 115693227 -8382945 - RMER3D-int LTR ERVK -1237 1605 652 3 1467 2920 81 29 0 chr9 115693597 115694006 -8382166 - BGLII LTR ERVK 0 421 1 3 1467 215 286 133 0 chr9 115694283 115694350 -8381822 - PB1D9 SINE Alu 0 120 42 3 1467 369 0 0 0 chr9 115694350 115694391 -8381781 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1467 215 286 133 0 chr9 115694391 115694428 -8381744 - PB1D9 SINE Alu -79 41 3 3 1467 4284 178 60 12 chr9 115694532 115695392 -8380780 + RMER1A Other Other 129 1030 0 3 1467 529 198 16 0 chr9 115696118 115696244 -8379928 + (TG)n Simple_repeat Simple_repeat 2 129 0 3 1467 659 247 59 21 chr9 115696247 115696433 -8379739 - B3A SINE B2 0 216 24 3 1467 2269 168 70 10 chr9 115696509 115696906 -8379266 - MTC LTR MaLR 0 421 1 3 1467 1722 144 47 85 chr9 115697595 115697959 -8378213 - ORR1B1 LTR MaLR -4 390 41 3 1467 484 261 8 25 chr9 115698688 115698806 -8377366 - ID_B1 SINE B4 -21 203 88 3 1467 655 195 67 18 chr9 115699013 115699220 -8376952 + MTD LTR MaLR 187 407 -14 3 1467 290 258 0 0 chr9 115699261 115699327 -8376845 + MLT1A LTR MaLR 265 330 -44 3 1467 387 0 0 0 chr9 115699333 115699376 -8376796 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1467 234 212 279 48 chr9 115699873 115699977 -8376195 + MTEa LTR MaLR 13 140 -239 3 1467 3550 66 32 2 chr9 115700015 115700483 -8375689 - RLTR45 LTR ERVK 0 482 1 3 1467 33027 29 10 6 chr9 115700483 115702960 -8373212 - RLTR45-int LTR ERVK 0 7244 4762 3 1467 252 0 0 0 chr9 115702960 115702988 -8373184 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 1467 33027 29 10 6 chr9 115702988 115704359 -8371813 - RLTR45-int LTR ERVK -2483 4761 3382 3 1467 11368 28 5 9 chr9 115704337 115705705 -8370467 - RLTR45-int LTR ERVK -4039 3205 1844 3 1467 705 54 216 0 chr9 115705701 115705812 -8370360 - RLTR45-int LTR ERVK -7109 135 1 3 1467 3674 55 30 2 chr9 115705812 115706281 -8369891 - RLTR45 LTR ERVK 0 482 1 3 1467 356 283 114 62 chr9 115706308 115706632 -8369540 + MT2A LTR ERVL 192 532 -1 3 1467 246 354 70 20 chr9 115706949 115707148 -8369024 - MLT1G3 LTR MaLR -386 209 1 3 1467 378 85 0 0 chr9 115707536 115707595 -8368577 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 3 1467 213 269 0 0 chr9 115707603 115707670 -8368502 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1467 343 263 0 10 chr9 115707721 115707821 -8368351 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 1467 476 267 289 34 chr9 115707821 115708214 -8367958 - MLT2B3 LTR ERVL -60 507 1 3 1467 761 298 4 18 chr9 115708802 115709031 -8367141 + B4 SINE B4 7 232 -60 3 1467 568 304 68 32 chr9 115709029 115709277 -8366895 + B4A SINE B4 8 264 -28 3 1467 387 0 0 0 chr9 115709284 115709327 -8366845 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1467 215 189 19 0 chr9 115709420 115709473 -8366699 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 4 1467 275 335 49 26 chr9 115710086 115710303 -8365869 + MIRc SINE MIR 47 268 0 4 1467 1093 243 88 30 chr9 115711035 115711374 -8364798 - ORR1E LTR MaLR 0 359 1 4 1467 312 239 0 0 chr9 115712899 115712970 -8363202 + ID_B1 SINE B4 121 191 -33 4 1467 603 235 111 50 chr9 115713744 115714029 -8362143 + MTE2a LTR MaLR 18 325 -94 4 1467 1120 82 7 0 chr9 115714029 115714176 -8361996 + B1_Mus1 SINE Alu 1 148 0 4 1467 582 137 0 0 chr9 115714176 115714271 -8361901 + (A)n Simple_repeat Simple_repeat 1 95 0 4 1467 989 232 76 70 chr9 115715224 115715581 -8360591 + ORR1E LTR MaLR 1 359 0 4 1467 203 349 0 0 chr9 115715892 115715958 -8360214 + CT-rich Low_complexity Low_complexity 4 69 0 4 1467 595 271 0 56 chr9 115716473 115716582 -8359590 + MTEb LTR MaLR 9 110 -269 4 1467 1430 87 0 20 chr9 115716582 115716781 -8359391 + B2_Mm2 SINE B2 1 195 0 4 1467 595 271 0 56 chr9 115716781 115716831 -8359341 + MTEb LTR MaLR 111 159 -220 4 1467 274 280 0 65 chr9 115717156 115717263 -8358909 - MTEb LTR MaLR 0 379 280 4 1467 245 307 69 35 chr9 115717296 115717441 -8358731 - MTEb LTR MaLR -145 229 80 4 1467 213 39 0 0 chr9 115717701 115717727 -8358445 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1467 188 111 28 0 chr9 115717737 115717773 -8358399 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 4 1467 1681 201 30 15 chr9 115717789 115717868 -8358304 - RLTR20A LTR ERVK -13 528 451 4 1467 228 35 0 0 chr9 115717868 115717897 -8358275 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1467 1681 201 30 15 chr9 115717897 115718212 -8357960 - RLTR20A LTR ERVK -91 450 129 4 1467 300 174 0 0 chr9 115718311 115718357 -8357815 + HAL1-3A_ME LINE L1 1976 2021 -837 4 1467 2138 116 179 8 chr9 115719422 115719814 -8356358 + RMER6B LTR ERVK 1 459 -2 4 1467 18113 145 56 47 chr9 115719841 115722544 -8353628 + MYSERV6-int LTR ERVK 4 2735 -6224 4 1467 243 0 0 0 chr9 115722544 115722571 -8353601 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1467 12812 147 24 22 chr9 115722571 115724322 -8351850 + MYSERV6-int LTR ERVK 2736 4504 -4455 4 1467 3042 147 97 7 chr9 115724334 115724890 -8351282 - RMER19C LTR ERVK -5 606 1 4 1467 970 124 140 52 chr9 115724890 115725161 -8351011 - MurERV4_19-int LTR ERVK 0 5780 5486 4 1467 29 28 0 0 chr9 115725204 115725240 -8350932 + AT_rich Low_complexity Low_complexity 1 36 0 4 1467 330 248 152 0 chr9 115725240 115725385 -8350787 - RMER4A LTR ERVK -43 423 257 4 1467 6142 111 6 45 chr9 115725385 115726361 -8349811 - MurERV4_19-int LTR ERVK -404 5376 4439 4 1467 460 230 26 45 chr9 115726595 115726750 -8349422 + L1_Mus1 LINE L1 675 826 -5790 4 1467 2606 156 4 83 chr9 115726731 115726961 -8349211 + L1_Mus1 LINE L1 725 955 -5661 4 1467 1478 65 0 11 chr9 115726961 115727148 -8349024 + B2_Mm1a SINE B2 2 186 -7 4 1467 32432 106 8 15 chr9 115727148 115730192 -8345980 + L1_Mus1 LINE L1 953 3978 -1905 4 1467 1120 69 14 0 chr9 115730192 115730336 -8345836 + B1_Mm SINE Alu 2 147 0 4 1467 32432 86 7 7 chr9 115730336 115732848 -8343324 + L1_Mus1 LINE L1 3979 6475 -92 4 1467 257 167 0 0 chr9 115732835 115732889 -8343283 + L1_Mus3 LINE L1 6579 6632 -6 4 1467 4938 147 11 24 chr9 115732900 115733750 -8342422 - MurERV4_19-int LTR ERVK -1326 4454 3616 4 1467 11876 157 35 8 chr9 115733748 115735730 -8340442 - MurERV4_19-int LTR ERVK -3745 2035 1 4 1467 2325 171 87 16 chr9 115735730 115735981 -8340191 - RMER19C LTR ERVK 0 611 359 4 183 4724 105 26 39 chr9 115735981 115736705 -8339467 - RLTR19B LTR ERVK 0 715 1 4 1468 2325 144 55 20 chr9 115736705 115736976 -8339196 - RMER19C LTR ERVK -253 358 1 4 1468 2842 111 9 95 chr9 115736982 115737509 -8338663 + MYSERV6-int LTR ERVK 4513 4994 -3965 4 1468 229 246 180 0 chr9 115737509 115737570 -8338602 + B1_Mur4 SINE Alu 1 72 -78 4 1468 9863 128 89 67 chr9 115737643 115738951 -8337221 + MYSERV6-int LTR ERVK 4940 6323 -2636 4 1468 314 190 52 0 chr9 115738951 115739009 -8337163 + B1_Mus1 SINE Alu 1 61 -87 4 1468 240 302 0 0 chr9 115738957 115739020 -8337152 + ID_B1 SINE B4 90 152 -72 4 1468 9863 128 89 67 chr9 115739020 115739586 -8336586 + MYSERV6-int LTR ERVK 6324 6924 -2035 4 1468 1319 79 8 0 chr9 115739590 115739844 -8336328 + (TTC)n Simple_repeat Simple_repeat 1 256 0 4 1468 1264 61 0 0 chr9 115739853 115740018 -8336154 - B2_Mm2 SINE B2 -30 165 1 4 1468 4961 131 42 19 chr9 115740018 115740164 -8336008 + MYSERV6-int LTR ERVK 6914 7058 -1901 4 1468 1407 80 32 0 chr9 115740164 115740351 -8335821 - B2_Mm2 SINE B2 -2 193 1 4 1468 4961 131 42 19 chr9 115740351 115741036 -8335136 + MYSERV6-int LTR ERVK 7059 7764 -1195 4 1468 3134 129 7 2 chr9 115741039 115741498 -8334674 + RMER6B LTR ERVK 1 461 0 4 1468 290 280 13 0 chr9 115741621 115741696 -8334476 + B4 SINE B4 85 160 -132 4 1468 326 224 205 8 chr9 115741656 115741773 -8334399 - B4 SINE B4 -108 184 45 4 1468 232 287 34 11 chr9 115742136 115742224 -8333948 - ORR1D2 LTR MaLR -111 259 170 4 1468 1571 234 51 15 chr9 115742275 115742665 -8333507 + MTD LTR MaLR 14 417 -2 4 1468 363 210 25 0 chr9 115742838 115742919 -8333253 - ID SINE ID -140 84 2 4 1468 544 323 74 26 chr9 115743873 115744143 -8332029 - B4 SINE B4 -8 284 2 4 1468 201 330 32 0 chr9 115744532 115744626 -8331546 + MIRb SINE MIR 150 246 -22 4 1468 902 213 5 66 chr9 115744680 115744891 -8331281 - B3A SINE B2 0 198 1 4 1468 570 86 0 0 chr9 115744903 115744984 -8331188 + (TATG)n Simple_repeat Simple_repeat 2 82 0 4 1468 588 167 6 12 chr9 115745333 115745503 -8330669 + (TG)n Simple_repeat Simple_repeat 2 170 0 4 1468 219 36 0 0 chr9 115745528 115745556 -8330616 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1468 488 183 0 48 chr9 115745575 115745764 -8330408 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1468 354 37 0 53 chr9 115745776 115745833 -8330339 - HAL1-3A_ME LINE L1 -830 2028 1975 4 1468 318 184 0 0 chr9 115745880 115745956 -8330216 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1468 334 286 8 0 chr9 115745979 115746112 -8330060 + (TG)n Simple_repeat Simple_repeat 1 134 0 4 1468 287 61 41 0 chr9 115746112 115746161 -8330011 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 1468 327 104 0 0 chr9 115746711 115746759 -8329413 + (GGA)n Simple_repeat Simple_repeat 3 50 0 4 1468 413 305 37 74 chr9 115746911 115747125 -8329047 - LTR16A1 LTR ERVL -223 233 28 4 1468 517 253 60 36 chr9 115747125 115747293 -8328879 + B4 SINE B4 2 173 -119 4 1468 1231 257 71 3 chr9 115747297 115747637 -8328535 - ORR1D2 LTR MaLR -2 368 6 4 1468 417 237 77 24 chr9 115748290 115748486 -8327686 - RMER4B LTR ERVK 0 585 342 4 1468 211 227 13 26 chr9 115748490 115748567 -8327605 + (CAG)n Simple_repeat Simple_repeat 1 76 0 4 1468 837 213 66 13 chr9 115748633 115748861 -8327311 - RMER4B LTR ERVK -329 256 17 4 1468 438 20 0 0 chr9 115749191 115749242 -8326930 + (CTTA)n Simple_repeat Simple_repeat 2 52 0 4 1468 355 63 32 0 chr9 115750439 115750502 -8325670 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1468 998 85 17 6 chr9 115750519 115750697 -8325475 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1468 711 294 44 15 chr9 115750708 115750981 -8325191 - B4A SINE B4 -1 291 11 4 1468 722 217 0 0 chr9 115751396 115751534 -8324638 - B1_Mur1 SINE Alu -6 143 6 4 1468 477 0 0 0 chr9 115752066 115752119 -8324053 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1468 206 301 114 9 chr9 115752205 115752319 -8323853 + MIR SINE MIR 67 192 -70 4 1468 5078 37 0 2 chr9 115752346 115752942 -8323230 + L1Md_F2 LINE L1 5976 6570 -12 4 1468 867 256 27 88 chr9 115754017 115754312 -8321860 + MTEb LTR MaLR 7 283 -96 4 1468 426 268 158 110 chr9 115755488 115755523 -8320649 + B4A SINE B4 3 37 -255 4 1468 1478 180 114 29 chr9 115755523 115755704 -8320468 - RMER17C LTR ERVK 0 410 207 4 1468 606 51 0 0 chr9 115755704 115755782 -8320390 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 1468 1478 180 114 29 chr9 115755782 115755978 -8320194 - RMER17C LTR ERVK -204 206 1 4 1468 426 268 158 110 chr9 115755978 115756215 -8319957 + B4A SINE B4 38 288 -4 4 1468 206 304 29 0 chr9 115756216 115756285 -8319887 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 4 1468 354 23 0 0 chr9 115756406 115756449 -8319723 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1468 358 254 112 17 chr9 115756452 115756568 -8319604 - B3 SINE B2 -70 146 20 4 1468 236 278 14 0 chr9 115756669 115756741 -8319431 - B4A SINE B4 -219 73 1 4 1468 1181 101 6 0 chr9 115757416 115757595 -8318577 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1468 845 259 117 23 chr9 115757865 115758130 -8318042 + B4 SINE B4 2 291 -1 4 1468 224 311 0 0 chr9 115758135 115758196 -8317976 + (CATA)n Simple_repeat Simple_repeat 1 61 0 4 1468 448 122 11 22 chr9 115758200 115758292 -8317880 + (ATG)n Simple_repeat Simple_repeat 3 93 0 4 1468 327 65 0 0 chr9 115758540 115758586 -8317586 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1468 515 279 0 0 chr9 115758601 115758723 -8317449 + B1F SINE Alu 27 148 -1 4 1468 23 33 0 0 chr9 115759085 115759115 -8317057 + AT_rich Low_complexity Low_complexity 1 30 0 4 1468 318 290 59 10 chr9 115759728 115759829 -8316343 - PB1D10 SINE Alu -6 111 6 4 1468 431 296 55 25 chr9 115759746 115759909 -8316263 - ID_B1 SINE B4 -55 169 2 4 1468 833 202 50 55 chr9 115760527 115760726 -8315446 + B3A SINE B2 1 198 0 4 1468 252 0 0 0 chr9 115760848 115760876 -8315296 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 4 1468 211 64 59 78 chr9 115760913 115761015 -8315157 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 4 1468 216 0 0 0 chr9 115761048 115761072 -8315100 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 1468 239 352 11 0 chr9 115761993 115762084 -8314088 + MLT1J2 LTR MaLR 69 160 -288 4 1468 1597 122 101 107 chr9 115762134 115762519 -8313653 - RMER4B LTR ERVK 0 585 203 4 1468 465 206 17 81 chr9 115762775 115762949 -8313223 + RNLTR23 LTR ERVK 480 642 0 4 1468 1045 127 0 0 chr9 115762949 115763106 -8313066 - RMER4B LTR ERVK -377 208 52 4 1468 306 0 0 0 chr9 115763106 115763140 -8313032 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1468 910 246 73 70 chr9 115763344 115763702 -8312470 + ORR1E LTR MaLR 1 359 0 4 1468 1648 187 40 35 chr9 115764422 115764798 -8311374 + ORR1C2 LTR MaLR 4 381 -3 4 1468 408 211 28 19 chr9 115765028 115765134 -8311038 - MTD LTR MaLR -15 404 298 4 1468 221 139 23 0 chr9 115766938 115766981 -8309191 + GA-rich Low_complexity Low_complexity 1 44 0 4 1468 232 196 71 0 chr9 115766984 115767040 -8309132 - RMER5 LTR ERV1 0 534 475 4 1468 444 82 0 0 chr9 115767080 115767141 -8309031 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 4 1468 261 0 0 0 chr9 115767326 115767355 -8308817 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 1468 180 0 0 0 chr9 115767633 115767653 -8308519 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1468 1096 128 20 5 chr9 115769106 115769310 -8306862 - Lx2 LINE L1 0 6997 6791 4 1468 2238 136 24 84 chr9 115769448 115769975 -8306197 - RLTR1B LTR ERV1 0 512 1 4 1468 279 311 57 19 chr9 115770039 115770144 -8306028 + MER5A DNA MER1_type 63 171 -18 4 1468 738 256 50 20 chr9 115770582 115770781 -8305391 + B4A SINE B4 1 205 -87 5 1468 270 0 0 0 chr9 115770806 115770836 -8305336 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1468 415 272 42 54 chr9 115770851 115771018 -8305154 - MER5A1 DNA MER1_type -1 165 1 5 1468 203 415 0 0 chr9 115772015 115772174 -8303998 + C-rich Low_complexity Low_complexity 1 159 0 5 1468 2285 220 13 34 chr9 115772716 115773235 -8302937 - RMER5 LTR ERV1 0 534 26 5 1468 915 132 0 0 chr9 115773235 115773386 -8302786 + (TC)n Simple_repeat Simple_repeat 2 152 0 5 1468 714 167 0 0 chr9 115773412 115773544 -8302628 + CT-rich Low_complexity Low_complexity 2 133 0 5 1468 275 254 0 16 chr9 115773926 115773990 -8302182 + CT-rich Low_complexity Low_complexity 3 65 0 5 1468 486 96 0 0 chr9 115774121 115774194 -8301978 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1468 597 291 55 0 chr9 115774194 115774359 -8301813 - B3A SINE B2 -24 174 1 5 1468 249 286 0 13 chr9 115774441 115774519 -8301653 + CT-rich Low_complexity Low_complexity 4 80 0 5 1468 372 59 0 0 chr9 115775100 115775151 -8301021 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1468 539 289 13 7 chr9 115775151 115775304 -8300868 - B3A SINE B2 -44 154 1 5 1468 27 49 0 0 chr9 115775685 115775726 -8300446 + AT_rich Low_complexity Low_complexity 1 41 0 5 1468 372 200 0 0 chr9 115775766 115775851 -8300321 + (TG)n Simple_repeat Simple_repeat 1 85 0 5 1468 529 284 69 54 chr9 115775875 115776151 -8300021 - B4 SINE B4 -12 280 1 5 1468 549 0 0 0 chr9 115776736 115776797 -8299375 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1468 335 314 58 14 chr9 115776838 115776977 -8299195 - MLT1H LTR MaLR 0 549 405 5 1468 1036 231 122 24 chr9 115778109 115778438 -8297734 - MTEb LTR MaLR -16 363 3 5 1468 424 258 0 11 chr9 115778577 115778671 -8297501 - B4A SINE B4 -78 214 122 5 1468 345 281 69 35 chr9 115779441 115779614 -8296558 - LTR41 LTR ERVL -587 181 3 5 1468 395 265 183 51 chr9 115779676 115779851 -8296321 + B4 SINE B4 2 199 -93 5 1468 369 0 0 0 chr9 115779880 115779921 -8296251 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1468 941 234 65 110 chr9 115780774 115781110 -8295062 - MTE2a LTR MaLR -19 360 59 5 1468 469 259 17 33 chr9 115781113 115781233 -8294939 + B4A SINE B4 173 290 -2 5 1468 468 91 0 0 chr9 115781263 115781329 -8294843 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1468 473 262 164 22 chr9 115781737 115781920 -8294252 - B3 SINE B2 -7 209 1 5 1468 732 88 9 0 chr9 115781920 115782030 -8294142 - B1_Mus1 SINE Alu -37 111 1 5 1468 371 214 0 132 chr9 115781918 115782047 -8294125 - MT2B LTR ERVL -337 264 153 5 1468 401 0 0 20 chr9 115782564 115782614 -8293558 + (GGGTG)n Simple_repeat Simple_repeat 3 51 0 5 1468 402 236 0 0 chr9 115782982 115783071 -8293101 + MLT1B LTR MaLR 297 385 -5 5 1468 940 262 112 30 chr9 115783429 115783873 -8292299 - RLTR12B LTR ERVK -27 501 1 5 1468 501 17 0 0 chr9 115784011 115784069 -8292103 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1468 279 0 0 0 chr9 115784069 115784099 -8292073 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1468 289 326 31 92 chr9 115784114 115784180 -8291992 - RSINE1 SINE B4 -9 156 95 5 1468 999 152 20 56 chr9 115784180 115784375 -8291797 + B2_Mm2 SINE B2 3 190 -5 5 1468 289 326 31 92 chr9 115784375 115784406 -8291766 - RSINE1 SINE B4 -71 94 65 5 1468 247 265 82 68 chr9 115784583 115784802 -8291370 - L1MC4 LINE L1 -4565 1650 1429 5 1468 11345 111 22 19 chr9 115785276 115788176 -8287996 - Lx4A LINE L1 -2 7056 2050 5 1468 330 26 0 0 chr9 115788176 115788215 -8287957 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1468 11345 105 32 25 chr9 115788215 115788674 -8287498 - Lx4A LINE L1 -3828 2049 1615 5 1468 3026 69 18 0 chr9 115788674 115789067 -8287105 - MTB LTR MaLR 0 400 1 5 1468 11345 121 31 32 chr9 115789067 115790154 -8286018 - Lx4A LINE L1 -4263 1614 516 5 1468 267 320 53 46 chr9 115790893 115791024 -8285148 - L1M5 LINE L1 -3903 2243 2112 5 1468 296 320 0 0 chr9 115791291 115791366 -8284806 - RSINE1 SINE B4 -5 160 86 5 1468 207 157 23 57 chr9 115791780 115791868 -8284304 + GA-rich Low_complexity Low_complexity 5 89 0 5 1468 296 417 51 19 chr9 115791937 115792152 -8284020 - LTR33A_ LTR ERVL -290 241 20 5 1468 363 227 0 0 chr9 115792450 115792547 -8283625 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 1468 1085 302 84 3 chr9 115792602 115792984 -8283188 - Lx8 LINE L1 -210 7263 6851 5 1468 3107 20 0 0 chr9 115793359 115793705 -8282467 - ORR1A0 LTR MaLR 0 346 1 5 1468 275 228 109 32 chr9 115793720 115793814 -8282358 + L2a LINE L2 3245 3394 -32 5 1468 243 88 0 0 chr9 115794036 115794070 -8282102 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 5 1468 339 25 0 0 chr9 115794070 115794110 -8282062 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1468 556 267 128 5 chr9 115795328 115795363 -8280809 - B3 SINE B2 -5 211 169 5 1468 429 36 0 0 chr9 115795363 115795418 -8280754 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1468 556 267 128 5 chr9 115795418 115795570 -8280602 - B3 SINE B2 -48 168 2 5 1468 295 41 0 39 chr9 115795780 115795831 -8280341 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1468 1176 61 0 0 chr9 115795835 115795982 -8280190 - B1_Mm SINE Alu 0 147 1 5 1468 3137 160 220 11 chr9 115796460 115797200 -8278972 + RMER19B LTR ERVK 1 895 -7 5 1468 682 321 33 4 chr9 115797360 115797601 -8278571 - MLT1A0 LTR MaLR -117 248 1 5 1468 776 251 0 6 chr9 115797731 115797911 -8278261 + MTEb LTR MaLR 1 179 -200 5 1468 757 178 9 4 chr9 115797924 115798160 -8278012 + GA-rich Low_complexity Low_complexity 1 237 0 5 1468 430 272 96 0 chr9 115798195 115798331 -8277841 + MTEb LTR MaLR 221 369 -10 5 1468 423 175 149 37 chr9 115798361 115798468 -8277704 + PB1D9 SINE Alu 1 119 -1 5 1468 23 33 0 0 chr9 115798732 115798762 -8277410 + AT_rich Low_complexity Low_complexity 1 30 0 5 1468 358 243 171 29 chr9 115798830 115798895 -8277277 - RMER30 DNA MER1_type -34 168 104 5 1468 1132 97 17 0 chr9 115798895 115799071 -8277101 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 5 1468 358 243 171 29 chr9 115799071 115799145 -8277027 - RMER30 DNA MER1_type -99 103 10 5 1468 291 297 58 35 chr9 115799158 115799329 -8276843 + MLT1H LTR MaLR 331 505 -44 5 1468 389 170 75 0 chr9 115799375 115799469 -8276703 - Lx5 LINE L1 -3 7047 6947 5 1468 713 258 8 128 chr9 115799547 115799796 -8276376 - ID_B1 SINE B4 -3 221 3 5 1468 340 176 0 32 chr9 115801309 115801403 -8274769 + CT-rich Low_complexity Low_complexity 4 94 0 5 1468 291 345 52 17 chr9 115801414 115801529 -8274643 - PB1D7 SINE Alu -1 119 1 5 1468 447 229 57 0 chr9 115801553 115801658 -8274514 - ID_B1 SINE B4 -2 222 112 5 1468 417 39 0 0 chr9 115803383 115803434 -8272738 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1468 534 278 64 17 chr9 115803453 115803625 -8272547 - B4A SINE B4 -25 267 88 5 1468 327 287 64 9 chr9 115803734 115803843 -8272329 + MTD LTR MaLR 273 387 -32 5 1468 324 232 163 109 chr9 115804161 115804199 -8271973 - B2_Mm2 SINE B2 -1 194 162 5 1468 333 0 0 0 chr9 115804199 115804236 -8271936 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1468 581 232 163 109 chr9 115804236 115804381 -8271791 - B3A SINE B2 -34 161 1 5 1468 465 133 0 0 chr9 115804475 115804550 -8271622 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1468 195 309 0 0 chr9 115804625 115804680 -8271492 - MIR SINE MIR -117 145 91 5 1468 1729 141 177 78 chr9 115805010 115805495 -8270677 - RMER6C LTR ERVK -151 539 7 5 1468 396 192 0 0 chr9 115805929 115806033 -8270139 + CT-rich Low_complexity Low_complexity 1 104 0 5 1468 261 0 0 0 chr9 115806033 115806062 -8270110 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1468 631 58 0 0 chr9 115807041 115807127 -8269045 - B1_Mus2 SINE Alu -4 143 58 5 1468 341 258 45 0 chr9 115807347 115807436 -8268736 + MTEb LTR MaLR 30 122 -257 5 1468 383 189 14 0 chr9 115807457 115807531 -8268641 - RMER12 LTR ERVK -31 1291 1217 5 1468 331 204 54 202 chr9 115807545 115807674 -8268498 - RMER12 LTR ERVK -237 1085 976 5 1468 1213 102 0 39 chr9 115807696 115807899 -8268273 + MTB_Mm LTR MaLR 1 195 -212 5 1468 7986 52 0 0 chr9 115807899 115808870 -8267302 + L1Md_F2 LINE L1 4616 5586 -297 5 1468 8067 46 12 6 chr9 115808870 115809860 -8266312 + L1Md_F2 LINE L1 5587 6582 0 5 1468 3126 131 52 11 chr9 115809869 115810432 -8265740 - RMER12 LTR ERVK -736 586 1 5 1468 990 234 35 23 chr9 115810432 115810690 -8265482 + MTEb LTR MaLR 117 377 -2 5 1468 467 204 0 11 chr9 115810782 115810876 -8265296 - MTEa LTR MaLR -253 126 34 5 1468 200 34 0 33 chr9 115811563 115811593 -8264579 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1468 2672 89 131 2 chr9 115811603 115812007 -8264165 - Lx3A LINE L1 -3 6978 6523 5 1468 339 25 0 0 chr9 115812007 115812047 -8264125 + (TTTTC)n Simple_repeat Simple_repeat 4 43 0 5 1468 13908 80 23 40 chr9 115812113 115815074 -8261098 - L1VL2 LINE L1 -628 2987 96 5 1468 291 297 113 21 chr9 115815074 115815172 -8261000 + RMER15 LTR ERVL 385 497 -78 5 1468 180 0 0 0 chr9 115815172 115815192 -8260980 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1468 291 297 113 21 chr9 115815192 115815234 -8260938 + RMER15 LTR ERVL 498 538 -37 5 1468 453 213 150 61 chr9 115815342 115815522 -8260650 + B3A SINE B2 1 196 -2 5 1468 475 263 216 28 chr9 115815726 115815902 -8260270 - ID_B1 SINE B4 -14 210 2 5 1468 846 249 58 141 chr9 115816536 115816948 -8259224 + MTEa LTR MaLR 2 379 0 5 1468 457 136 140 35 chr9 115817199 115817313 -8258859 + B1F SINE Alu 23 148 -1 5 1468 189 0 0 0 chr9 115818682 115818703 -8257469 + (TCTCTG)n Simple_repeat Simple_repeat 3 23 0 5 1468 423 38 0 0 chr9 115818709 115818762 -8257410 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1468 239 312 0 25 chr9 115818774 115818853 -8257319 - B4 SINE B4 -1 291 215 5 1468 1071 88 0 26 chr9 115818883 115818896 -8257276 - B1_Mus1 SINE Alu 0 148 137 5 1468 1221 99 0 0 chr9 115818896 115819099 -8257073 + (TTTC)n Simple_repeat Simple_repeat 1 203 0 5 1468 1071 88 0 26 chr9 115819099 115819235 -8256937 - B1_Mus1 SINE Alu -12 136 3 5 1468 363 44 0 0 chr9 115819371 115819416 -8256756 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 1468 447 125 0 0 chr9 115820343 115820415 -8255757 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 1468 895 208 13 62 chr9 115820451 115820677 -8255495 - B3 SINE B2 0 216 2 6 1468 463 273 36 26 chr9 115820688 115820880 -8255292 + RMER30 DNA MER1_type 8 201 -1 6 1468 440 279 269 9 chr9 115821588 115821811 -8254361 - B4 SINE B4 -11 281 1 6 1468 228 305 0 12 chr9 115822167 115822250 -8253922 + ID4_ SINE ID 1 82 -1 6 1468 228 277 77 0 chr9 115822276 115822341 -8253831 + B1F1 SINE Alu 67 136 -13 6 1468 622 262 28 0 chr9 115822900 115823041 -8253131 + ID_B1 SINE B4 70 214 -10 6 1468 459 0 0 0 chr9 115823041 115823092 -8253080 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1468 465 66 0 0 chr9 115823092 115823153 -8253019 + (GA)n Simple_repeat Simple_repeat 1 61 0 6 1468 352 339 47 38 chr9 115823720 115823956 -8252216 - B4A SINE B4 -50 242 5 6 1468 293 306 45 36 chr9 115825513 115825625 -8250547 - RSINE1 SINE B4 0 165 53 6 1468 414 53 0 0 chr9 115826265 115826322 -8249850 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1468 649 124 0 0 chr9 115826338 115826427 -8249745 - L1_Mur2 LINE L1 -299 5578 5490 6 1468 6094 52 4 0 chr9 115826604 115827351 -8248821 - Lx3_Mus LINE L1 0 7009 6260 6 1468 414 0 0 0 chr9 115828056 115828102 -8248070 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1468 2120 149 408 0 chr9 115828125 115828615 -8247557 - RMER6C LTR ERVK 0 690 1 6 1468 351 371 0 17 chr9 115828615 115828796 -8247376 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 1468 348 276 161 37 chr9 115828832 115828994 -8247178 - B3A SINE B2 -16 182 1 6 1468 340 315 90 28 chr9 115829276 115829531 -8246641 + LTR81B LTR ERV1? 58 328 -1065 6 1468 1583 211 25 84 chr9 115829737 115830140 -8246032 + MTEb LTR MaLR 1 379 0 6 1468 240 276 0 50 chr9 115830523 115830603 -8245569 + RMER15 LTR ERVL 376 451 -124 6 1468 404 287 0 34 chr9 115830999 115831118 -8245054 + PB1D10 SINE Alu 3 117 0 6 1468 576 292 7 0 chr9 115831377 115831524 -8244648 - RSINE1 SINE B4 -14 151 4 6 1468 403 225 222 14 chr9 115831706 115831850 -8244322 + ID_B1 SINE B4 51 224 0 6 1468 181 302 67 67 chr9 115832409 115832558 -8243614 + MIRb SINE MIR 3 151 -117 6 1468 604 283 82 117 chr9 115832625 115832993 -8243179 + MTE2a LTR MaLR 10 364 -15 6 1468 261 323 59 76 chr9 115833213 115833442 -8242730 - MTEb LTR MaLR 0 419 194 6 1468 373 375 114 4 chr9 115833566 115833847 -8242325 + MLT1H-int LTR MaLR 1049 1360 -49 6 1468 504 346 75 25 chr9 115833868 115834218 -8241954 + MLT1H LTR MaLR 1 394 -185 6 1468 367 320 0 0 chr9 115834512 115834609 -8241563 + B1F SINE Alu 1 97 -52 6 1468 357 301 77 77 chr9 115835791 115836099 -8240073 - B4 SINE B4 -15 277 1 6 1468 199 333 17 0 chr9 115836151 115836211 -8239961 + MIR SINE MIR 88 148 -60 6 1468 252 0 0 0 chr9 115836517 115836545 -8239627 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1468 324 303 11 33 chr9 115837031 115837123 -8239049 + RSINE1 SINE B4 43 132 -33 6 1468 1600 202 72 17 chr9 115837227 115837392 -8238780 + ORR1D1 LTR MaLR 1 164 -210 6 1468 486 0 0 0 chr9 115837392 115837446 -8238726 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1468 1600 202 72 17 chr9 115837446 115837627 -8238545 + ORR1D1 LTR MaLR 165 365 -9 6 1468 2355 130 76 10 chr9 115837649 115838044 -8238128 + MTC LTR MaLR 1 421 0 6 1468 596 308 43 98 chr9 115838697 115838931 -8237241 + ID_B1 SINE B4 3 223 -1 6 1468 531 69 9 47 chr9 115838933 115839040 -8237132 + (GGAGA)n Simple_repeat Simple_repeat 2 104 0 6 1468 711 35 0 0 chr9 115839049 115839135 -8237037 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 6 1468 227 355 112 30 chr9 115839327 115839559 -8236613 + Tigger10 DNA Tigger 768 1018 -825 6 1468 940 263 10 99 chr9 115840150 115840462 -8235710 - B4 SINE B4 0 292 9 6 1468 402 21 0 0 chr9 115840523 115840570 -8235602 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 6 1468 235 385 0 0 chr9 115841016 115841107 -8235065 - L2c LINE L2 -52 3335 3245 6 1468 182 300 61 24 chr9 115841828 115841910 -8234262 - L2c LINE L2 -265 3161 3077 6 1468 752 103 9 0 chr9 115843095 115843211 -8232961 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 6 1468 589 165 10 0 chr9 115843861 115843958 -8232214 + B3 SINE B2 2 99 -117 6 1468 189 0 0 0 chr9 115844106 115844127 -8232045 + (TC)n Simple_repeat Simple_repeat 1 21 0 6 1468 1982 148 156 3 chr9 115844175 115844540 -8231632 + MTC LTR MaLR 1 421 0 6 1468 464 184 0 10 chr9 115844543 115844642 -8231530 + C-rich Low_complexity Low_complexity 6 103 0 6 1468 362 256 98 90 chr9 115844652 115844785 -8231387 - B1F SINE Alu -15 134 1 6 1468 544 273 35 7 chr9 115845371 115845515 -8230657 + ID_B1 SINE B4 2 149 -75 6 1468 327 49 0 0 chr9 115845522 115845563 -8230609 + (CAAG)n Simple_repeat Simple_repeat 2 42 0 6 1468 216 0 0 0 chr9 115846505 115846529 -8229643 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1468 990 241 15 0 chr9 115847182 115847381 -8228791 - B3 SINE B2 -14 202 1 6 1468 258 193 0 0 chr9 115847489 115847546 -8228626 + CT-rich Low_complexity Low_complexity 2 58 0 6 1468 510 292 34 7 chr9 115847589 115847737 -8228435 - Lx8 LINE L1 -190 7283 7132 6 1468 313 235 146 10 chr9 115847760 115847863 -8228309 - PB1D10 SINE Alu 0 117 1 6 1468 486 0 0 0 chr9 115848330 115848384 -8227788 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1468 333 0 0 0 chr9 115848384 115848420 -8227752 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1468 295 315 108 20 chr9 115848782 115848986 -8227186 + L2 LINE L2 1858 2079 -1340 6 1468 257 323 131 72 chr9 115849492 115849970 -8226202 - L2a LINE L2 -178 3248 2748 6 1468 462 169 0 25 chr9 115850876 115850997 -8225175 + GA-rich Low_complexity Low_complexity 3 120 0 6 1468 1131 194 32 5 chr9 115851156 115851373 -8224799 + ID_B1 SINE B4 2 224 0 6 1468 733 325 32 29 chr9 115852624 115852903 -8223269 + B4A SINE B4 13 292 0 6 1468 227 302 215 28 chr9 115852885 115853062 -8223110 - RMER12 LTR ERVK -466 856 647 6 1468 189 233 15 91 chr9 115853424 115853490 -8222682 - MIRc SINE MIR -160 108 48 6 1468 1004 259 68 0 chr9 115853648 115853899 -8222273 + B4 SINE B4 2 269 -23 6 1468 378 0 0 0 chr9 115853899 115853941 -8222231 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1468 230 159 32 0 chr9 115853954 115854017 -8222155 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 6 1468 470 168 24 24 chr9 115854034 115854199 -8221973 + (CAGA)n Simple_repeat Simple_repeat 4 168 0 6 1468 378 280 82 68 chr9 115854364 115854571 -8221601 - L2b LINE L2 -220 3155 2946 6 1468 217 237 75 119 chr9 115854595 115854729 -8221443 - L2b LINE L2 -319 3056 2929 6 1468 227 343 116 82 chr9 115854814 115854960 -8221212 + B4A SINE B4 1 151 -141 6 1468 297 0 0 0 chr9 115855073 115855106 -8221066 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1468 273 29 0 0 chr9 115855106 115855139 -8221033 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1468 349 333 61 0 chr9 115855274 115855388 -8220784 + B4A SINE B4 100 220 -72 6 1468 197 244 0 24 chr9 115855798 115855840 -8220332 - MER5B DNA MER1_type -1 177 137 6 1468 269 362 99 7 chr9 115857116 115857258 -8218914 - LTR16A LTR ERVL -247 204 50 6 1468 206 130 36 18 chr9 115858911 115858966 -8217206 + A-rich Low_complexity Low_complexity 1 56 0 6 1468 1222 288 25 38 chr9 115858993 115859390 -8216782 + Lx9 LINE L1 7065 7456 -188 6 1468 324 0 0 0 chr9 115859390 115859426 -8216746 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1468 411 21 0 0 chr9 115859703 115859751 -8216421 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1468 324 0 0 0 chr9 115859751 115859786 -8216386 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1468 742 330 14 24 chr9 115860762 115861051 -8215121 - RMER15 LTR ERVL -15 560 275 6 1468 265 295 143 0 chr9 115861080 115861192 -8214980 - RMER15 LTR ERVL -445 130 3 6 1468 732 23 0 0 chr9 115862864 115862950 -8213222 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 6 1468 655 19 0 139 chr9 115862953 115863075 -8213097 - L1Md_F2 LINE L1 -14 6568 6464 6 1468 25 31 0 0 chr9 115864667 115864699 -8211473 + AT_rich Low_complexity Low_complexity 1 32 0 6 1468 687 255 14 0 chr9 115864723 115864868 -8211304 - RSINE1 SINE B4 -15 150 4 6 1468 184 200 16 16 chr9 115865251 115865312 -8210860 + CT-rich Low_complexity Low_complexity 2 62 0 6 1468 252 86 0 0 chr9 115865328 115865363 -8210809 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 1468 347 245 0 9 chr9 115865715 115865826 -8210346 + (CA)n Simple_repeat Simple_repeat 1 110 0 6 1468 1477 73 5 5 chr9 115866549 115866741 -8209431 - B2_Mm2 SINE B2 -2 193 2 6 1469 3994 93 43 2 chr9 115868185 115868746 -8207426 - MT2B2 LTR ERVL 0 584 1 6 1469 194 219 16 0 chr9 115870292 115870356 -8205816 + CT-rich Low_complexity Low_complexity 1 65 0 6 1469 301 327 57 38 chr9 115870374 115870429 -8205743 - HAL1-3A_ME LINE L1 -416 2442 2382 6 1469 2562 134 365 20 chr9 115870429 115870977 -8205195 - RMER19A LTR ERVK 0 737 1 6 1469 301 327 57 38 chr9 115870977 115871080 -8205092 - HAL1-3A_ME LINE L1 -477 2381 2281 6 1469 235 282 0 53 chr9 115871083 115871158 -8205014 + polypyrimidine Low_complexity Low_complexity 4 74 0 6 1469 399 280 17 86 chr9 115872402 115872519 -8203653 - PB1D10 SINE Alu 0 117 9 6 1469 669 259 102 24 chr9 115872427 115872593 -8203579 - ID_B1 SINE B4 -45 179 1 6 1469 188 239 92 66 chr9 115873855 115873931 -8202241 + MIRb SINE MIR 119 196 -72 6 1469 225 228 100 82 chr9 115873934 115874044 -8202128 + ORR1B2 LTR MaLR 110 221 -146 6 1469 877 286 49 30 chr9 115874878 115875141 -8201031 + B4 SINE B4 3 270 -22 6 1469 432 0 0 0 chr9 115875142 115875190 -8200982 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1469 981 279 23 8 chr9 115877729 115877985 -8198187 - B4A SINE B4 -30 262 3 7 1469 276 390 45 29 chr9 115878277 115878520 -8197652 + MLT1L LTR MaLR 364 610 0 7 1469 945 226 18 32 chr9 115878802 115879021 -8197151 + B3 SINE B2 1 216 0 7 1469 476 268 73 0 chr9 115879045 115879168 -8197004 - MTE2b LTR MaLR -247 132 1 7 1469 1840 193 72 32 chr9 115879547 115879948 -8196224 - MTC LTR MaLR 0 421 5 7 1469 296 250 0 64 chr9 115880103 115880193 -8195979 - MER34 LTR ERV1 -68 474 391 7 1469 272 257 43 14 chr9 115880193 115880275 -8195897 + ID4_ SINE ID 2 85 -67 7 1469 4468 133 29 8 chr9 115880284 115881020 -8195152 + RMER6A LTR ERVK 1 751 -5 7 1469 393 181 28 0 chr9 115881310 115881382 -8194790 - MTEb LTR MaLR 0 379 306 7 1469 326 300 0 0 chr9 115881384 115881464 -8194708 - ORR1E LTR MaLR -279 80 1 7 1469 1948 261 54 50 chr9 115881464 115882011 -8194161 - MTE-int LTR MaLR -53 1527 979 7 1469 392 237 8 0 chr9 115882925 115883056 -8193116 + (TG)n Simple_repeat Simple_repeat 1 132 0 7 1469 555 302 55 58 chr9 115883061 115883299 -8192873 - B4A SINE B4 -3 289 51 7 1469 21 36 0 0 chr9 115883634 115883662 -8192510 + AT_rich Low_complexity Low_complexity 1 28 0 7 1469 883 207 46 6 chr9 115883681 115883856 -8192316 - B3A SINE B2 -16 182 1 7 1469 230 229 0 20 chr9 115884377 115884428 -8191744 + GA-rich Low_complexity Low_complexity 1 49 0 7 1469 1045 121 0 11 chr9 115884428 115884604 -8191568 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 7 1469 225 296 0 14 chr9 115884604 115884625 -8191547 + polypurine Low_complexity Low_complexity 50 70 0 7 1469 302 312 98 14 chr9 115884625 115884768 -8191404 + HAL1-3A_ME LINE L1 2284 2438 -420 7 1469 621 0 0 0 chr9 115884925 115884994 -8191178 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1469 1102 36 0 21 chr9 115885287 115885428 -8190744 - B1_Mus2 SINE Alu 0 147 10 7 1469 1212 238 10 44 chr9 115885575 115885870 -8190302 - B4A SINE B4 0 292 8 7 1469 337 212 50 0 chr9 115886475 115886555 -8189617 + B4 SINE B4 9 92 -200 7 1469 281 282 0 14 chr9 115886577 115886649 -8189523 + B4 SINE B4 210 280 -12 7 1469 202 0 59 29 chr9 115886812 115886846 -8189326 + (CACCC)n Simple_repeat Simple_repeat 2 36 0 7 1469 313 328 36 51 chr9 115887166 115887362 -8188810 - CR1_Mam LINE CR1 -1254 950 758 7 1469 345 47 0 0 chr9 115887515 115887558 -8188614 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 7 1469 341 311 76 0 chr9 115888371 115888503 -8187669 + B1_Mur2 SINE Alu 1 142 -7 7 1469 1763 227 68 94 chr9 115888601 115889094 -8187078 - RLTR17 LTR ERVK -90 602 128 7 1469 1067 42 27 20 chr9 115889094 115889240 -8186932 - B1_Mus2 SINE Alu 0 147 1 7 1469 1763 227 68 94 chr9 115889240 115889364 -8186808 - RLTR17 LTR ERVK -565 127 1 7 1469 3565 182 64 36 chr9 115889364 115890158 -8186014 - RMER3D-int LTR ERVK 0 2842 2027 7 1469 940 111 55 31 chr9 115890210 115890425 -8185747 - LTRIS5 LTR ERV1 0 512 228 7 1469 338 102 51 0 chr9 115890462 115890521 -8185651 - LTRIS5 LTR ERV1 -385 62 1 7 1469 1385 11 6 16 chr9 115890539 115890721 -8185451 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1469 414 319 0 0 chr9 115890721 115890834 -8185338 - RSINE1 SINE B4 -18 147 35 7 1469 350 310 26 9 chr9 115891240 115891354 -8184818 - PB1 SINE Alu -6 121 6 7 1469 309 238 129 16 chr9 115891426 115891550 -8184622 - L1M5 LINE L1 -373 5791 5654 7 1469 543 310 19 19 chr9 115892099 115892260 -8183912 - RSINE1 SINE B4 -3 162 2 7 1469 226 301 27 0 chr9 115892283 115892356 -8183816 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 7 1469 727 237 84 0 chr9 115892378 115892568 -8183604 - B4 SINE B4 -22 270 65 7 1469 384 22 0 0 chr9 115892703 115892748 -8183424 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1469 630 328 10 28 chr9 115893739 115894018 -8182154 - B4A SINE B4 -8 284 13 7 1469 879 83 0 0 chr9 115894079 115894200 -8181972 + (CA)n Simple_repeat Simple_repeat 2 122 0 7 1469 318 346 28 0 chr9 115894272 115894379 -8181793 + PB1D10 SINE Alu 1 110 -7 7 1469 629 303 49 19 chr9 115894682 115894948 -8181224 - B4A SINE B4 -18 274 1 7 1469 423 38 0 0 chr9 115895774 115895827 -8180345 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1469 232 180 20 20 chr9 115896177 115896228 -8179944 - ID_B1 SINE B4 -46 178 128 7 1469 420 226 0 0 chr9 115896540 115896624 -8179548 + B3A SINE B2 3 86 -112 7 1469 342 0 0 0 chr9 115896672 115896710 -8179462 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1469 360 0 0 0 chr9 115897448 115897488 -8178684 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1469 1773 257 111 10 chr9 115897513 115898099 -8178073 - Lx8 LINE L1 -2 7471 6827 7 1469 747 296 66 35 chr9 115898379 115898698 -8177474 + Lx8 LINE L1 7140 7468 -5 7 1469 279 0 0 0 chr9 115899485 115899516 -8176656 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1469 567 251 5 71 chr9 115899854 115900051 -8176121 + B3 SINE B2 1 184 -32 7 1469 246 329 127 0 chr9 115900382 115900461 -8175711 + RSINE1 SINE B4 60 148 -17 7 1469 234 0 0 0 chr9 115900467 115900493 -8175679 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1469 417 158 0 0 chr9 115900493 115900594 -8175578 + GA-rich Low_complexity Low_complexity 1 101 0 7 1469 368 298 7 58 chr9 115900594 115900733 -8175439 - RCHARR1 DNA MER1_type -774 200 69 7 1469 296 306 172 0 chr9 115902258 115902438 -8173734 + ID_B1 SINE B4 1 211 -13 7 1469 646 145 8 8 chr9 115903010 115903135 -8173037 + CT-rich Low_complexity Low_complexity 3 127 0 7 1469 553 264 0 0 chr9 115903598 115903723 -8172449 - RSINE1 SINE B4 -29 136 12 7 1469 255 125 0 0 chr9 115903762 115903802 -8172370 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1469 264 59 0 0 chr9 115904607 115904641 -8171531 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 1469 453 254 53 0 chr9 115904641 115904755 -8171417 - ID_B1 SINE B4 -14 210 91 7 1469 1148 249 22 95 chr9 115905774 115906133 -8170039 + MTEa LTR MaLR 1 333 -46 7 1469 216 244 0 0 chr9 115906694 115906784 -8169388 + (TG)n Simple_repeat Simple_repeat 1 90 0 7 1469 431 326 100 37 chr9 115906808 115907079 -8169093 - B4A SINE B4 -4 288 1 7 1469 575 117 0 11 chr9 115907150 115907245 -8168927 + (TAA)n Simple_repeat Simple_repeat 3 96 0 7 1469 854 170 0 17 chr9 115908151 115908393 -8167779 + C-rich Low_complexity Low_complexity 1 237 0 7 1469 909 74 0 0 chr9 115910421 115910543 -8165629 + (TTCC)n Simple_repeat Simple_repeat 1 122 0 7 1469 723 144 0 22 chr9 115910788 115910972 -8165200 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1469 201 178 0 0 chr9 115910984 115911029 -8165143 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1469 727 291 152 31 chr9 115912100 115912211 -8163961 - Lx8 LINE L1 0 7473 7348 7 1469 797 226 43 11 chr9 115912211 115912399 -8163773 - B3A SINE B2 0 198 5 7 1469 727 291 152 31 chr9 115912399 115912702 -8163470 - Lx8 LINE L1 -126 7347 7010 7 1469 560 254 183 21 chr9 115913724 115913965 -8162207 + B4A SINE B4 5 284 -8 7 1469 1734 192 121 13 chr9 115913966 115914346 -8161826 - MTC LTR MaLR 0 421 1 7 1469 486 0 0 0 chr9 115914375 115914429 -8161743 + (TATAA)n Simple_repeat Simple_repeat 2 55 0 7 1469 257 308 30 21 chr9 115914621 115914936 -8161236 + (ATGGTG)n Simple_repeat Simple_repeat 1 317 0 7 1469 364 55 0 18 chr9 115915819 115915874 -8160298 - HAL1-3A_ME LINE L1 -831 2027 1974 7 1469 512 262 0 6 chr9 115915877 115916218 -8159954 + (TG)n Simple_repeat Simple_repeat 1 338 0 7 1469 320 257 29 29 chr9 115916412 115916516 -8159656 + PB1D10 SINE Alu 1 104 -13 7 1469 366 23 0 0 chr9 115916516 115916559 -8159613 + (CATA)n Simple_repeat Simple_repeat 1 43 0 7 1469 684 188 14 68 chr9 115916731 115916879 -8159293 - B1_Mur2 SINE Alu -1 148 9 7 1469 959 202 29 5 chr9 115917206 115917410 -8158762 + B3 SINE B2 1 209 -7 7 1469 876 265 60 68 chr9 115917466 115917850 -8158322 - RMER5 LTR ERV1 -2 532 152 7 1469 350 297 124 47 chr9 115918249 115918507 -8157665 + B4 SINE B4 1 278 -14 7 1469 847 233 17 6 chr9 115918932 115919109 -8157063 + B3A SINE B2 2 180 -18 7 1469 243 0 0 0 chr9 115919155 115919182 -8156990 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1469 1419 188 84 21 chr9 115920103 115920214 -8155958 - ORR1D1 LTR MaLR -21 353 244 7 1469 204 40 0 0 chr9 115920214 115920239 -8155933 + (CAGG)n Simple_repeat Simple_repeat 4 28 0 7 1469 1419 188 84 21 chr9 115920239 115920459 -8155713 - ORR1D1 LTR MaLR -131 243 3 7 1469 672 265 113 20 chr9 115921144 115921447 -8154725 - Lx8 LINE L1 -2 7471 7141 7 1469 259 228 0 0 chr9 115921448 115921505 -8154667 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1469 276 235 24 36 chr9 115921514 115921598 -8154574 - Lx8 LINE L1 -362 7111 7029 7 1469 289 287 23 0 chr9 115921885 115921972 -8154200 + B4A SINE B4 2 90 -202 7 1469 548 219 66 0 chr9 115921979 115922116 -8154056 + B3A SINE B2 4 149 -49 7 1469 369 0 0 0 chr9 115922121 115922162 -8154010 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1469 510 148 34 0 chr9 115922211 115922299 -8153873 + B3A SINE B2 1 91 -107 7 1469 279 79 0 0 chr9 115922299 115922337 -8153835 + (CAG)n Simple_repeat Simple_repeat 1 38 0 7 1469 231 36 0 0 chr9 115922339 115922367 -8153805 + (CACG)n Simple_repeat Simple_repeat 1 28 0 7 1469 328 116 72 0 chr9 115922419 115922488 -8153684 + A-rich Low_complexity Low_complexity 2 75 0 7 1469 564 29 0 0 chr9 115922492 115922562 -8153610 + (CAGAT)n Simple_repeat Simple_repeat 2 71 0 7 1469 568 293 21 37 chr9 115922580 115922768 -8153404 + B4A SINE B4 108 292 0 7 1469 224 252 8 0 chr9 115922771 115922894 -8153278 + (CA)n Simple_repeat Simple_repeat 2 125 0 7 1469 618 264 107 0 chr9 115923368 115923527 -8152645 + B3A SINE B2 1 176 -22 7 1469 390 265 0 0 chr9 115923537 115923703 -8152469 + (CA)n Simple_repeat Simple_repeat 1 166 0 7 1469 247 282 13 0 chr9 115923716 115923794 -8152378 + (CATA)n Simple_repeat Simple_repeat 4 82 0 7 1469 272 273 7 0 chr9 115923807 115923961 -8152211 + (CA)n Simple_repeat Simple_repeat 2 156 0 8 1469 289 301 0 7 chr9 115924008 115924468 -8151704 + (CA)n Simple_repeat Simple_repeat 1 456 0 8 1469 496 304 0 7 chr9 115924480 115924932 -8151240 + (CA)n Simple_repeat Simple_repeat 1 448 0 8 1469 633 271 0 0 chr9 115925336 115925469 -8150703 - B3 SINE B2 0 216 84 8 1469 585 212 72 7 chr9 115925467 115925605 -8150567 - B3A SINE B2 -50 148 2 8 1469 531 298 128 38 chr9 115927077 115927342 -8148830 - Lx8 LINE L1 -217 7256 6968 8 1469 661 289 58 16 chr9 115928200 115928443 -8147729 - B4A SINE B4 -38 254 2 8 1469 231 114 0 0 chr9 115928708 115928743 -8147429 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1469 528 16 0 0 chr9 115929779 115929840 -8146332 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 1469 448 328 23 0 chr9 115929848 115930019 -8146153 - Lx9 LINE L1 -195 7449 7275 8 1469 792 258 68 15 chr9 115930383 115930588 -8145584 + B3 SINE B2 1 216 0 8 1469 237 33 0 0 chr9 115931464 115931494 -8144678 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1469 703 274 59 55 chr9 115931505 115931795 -8144377 - B4A SINE B4 0 292 2 8 1469 722 210 23 51 chr9 115931965 115932141 -8144031 - B3A SINE B2 -27 171 1 8 1469 318 245 0 122 chr9 115932548 115932655 -8143517 + B4 SINE B4 7 100 -192 8 1469 1250 242 64 25 chr9 115932671 115933062 -8143110 - MTD LTR MaLR -17 402 13 8 1469 596 284 10 67 chr9 115933563 115933577 -8142595 - B3A SINE B2 -1 197 183 8 1469 351 0 0 0 chr9 115933577 115933616 -8142556 + (TC)n Simple_repeat Simple_repeat 1 39 0 8 1469 596 284 10 67 chr9 115933616 115933809 -8142363 - B3A SINE B2 -16 182 2 8 1469 222 222 20 20 chr9 115934116 115934217 -8141955 + GA-rich Low_complexity Low_complexity 3 103 0 8 1469 1204 261 32 0 chr9 115936201 115936484 -8139688 + B4 SINE B4 1 292 0 8 1469 758 198 6 0 chr9 115936486 115936663 -8139509 + (CA)n Simple_repeat Simple_repeat 1 178 0 8 1469 258 225 28 0 chr9 115937748 115937819 -8138353 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 8 1469 427 217 0 77 chr9 115937839 115938034 -8138138 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1469 566 384 59 49 chr9 115938042 115938718 -8137454 - LTR41 LTR ERVL -84 684 2 8 1469 432 37 0 0 chr9 115939564 115939618 -8136554 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1469 482 0 17 0 chr9 115940454 115940512 -8135660 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 8 1469 1662 169 100 12 chr9 115940696 115941025 -8135147 + ORR1B2 LTR MaLR 2 359 -8 8 1469 190 340 82 9 chr9 115941964 115942074 -8134098 - L2c LINE L2 -15 3372 3255 8 1469 763 306 12 52 chr9 115942530 115942782 -8133390 + MTEa LTR MaLR 2 243 -136 8 1469 556 301 159 4 chr9 115943389 115943616 -8132556 - ORR1D2 LTR MaLR -107 263 2 8 1469 448 341 42 24 chr9 115943755 115943923 -8132249 + B3A SINE B2 2 172 -26 8 1469 562 11 58 0 chr9 115943933 115944020 -8132152 + (GA)n Simple_repeat Simple_repeat 2 93 0 8 1469 638 281 0 79 chr9 115945215 115945393 -8130779 + RSINE1 SINE B4 2 165 0 8 1469 734 335 33 70 chr9 115945439 115945741 -8130431 + B4 SINE B4 2 292 0 8 1469 3337 182 170 48 chr9 115945821 115946627 -8129545 - RMER13B LTR ERVK 0 908 5 8 1469 622 306 85 0 chr9 115946715 115946973 -8129199 - B4A SINE B4 -10 282 3 8 1469 360 320 0 0 chr9 115947349 115947446 -8128726 + (TG)n Simple_repeat Simple_repeat 2 98 0 8 1469 783 286 66 12 chr9 115947531 115947775 -8128397 - MTEb LTR MaLR -122 257 1 8 1469 189 121 0 0 chr9 115947851 115947884 -8128288 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1469 981 222 44 5 chr9 115948698 115948779 -8127393 - B3 SINE B2 -4 212 132 8 1469 284 48 24 0 chr9 115948779 115948821 -8127351 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1469 981 222 44 5 chr9 115948821 115948943 -8127229 - B3 SINE B2 -85 131 1 8 1469 23 0 0 0 chr9 115949102 115949125 -8127047 + AT_rich Low_complexity Low_complexity 1 23 0 8 1469 297 0 0 0 chr9 115949130 115949163 -8127009 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1469 315 0 0 0 chr9 115949163 115949197 -8126975 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1469 1081 255 15 49 chr9 115949239 115949503 -8126669 - B4 SINE B4 -27 265 11 8 1469 189 0 0 0 chr9 115949503 115949524 -8126648 + (TC)n Simple_repeat Simple_repeat 2 22 0 8 1469 366 23 0 0 chr9 115949524 115949566 -8126606 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1469 212 311 95 0 chr9 115949574 115949648 -8126524 - ID SINE ID -141 83 3 8 1469 490 301 7 20 chr9 115950798 115950944 -8125228 + MamGypLTR1b LTR Gypsy 635 778 -4 8 1469 614 95 11 0 chr9 115952145 115952240 -8123932 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 8 1469 1154 107 0 6 chr9 115952433 115952611 -8123561 + (TTCTC)n Simple_repeat Simple_repeat 2 178 0 8 1469 343 82 103 0 chr9 115952612 115952709 -8123463 + CT-rich Low_complexity Low_complexity 5 111 0 8 1469 698 87 0 10 chr9 115952710 115952814 -8123358 + (TTTC)n Simple_repeat Simple_repeat 4 106 0 8 1469 412 261 17 17 chr9 115952816 115952946 -8123226 - B1_Mur1 SINE Alu -16 133 4 8 1469 563 280 108 6 chr9 115952975 115953133 -8123039 - ID_B1 SINE B4 -48 176 3 8 1469 441 36 0 0 chr9 115953277 115953332 -8122840 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1469 375 295 18 9 chr9 115953361 115953474 -8122698 - B3A SINE B2 -84 114 1 8 1469 391 366 66 62 chr9 115953848 115954381 -8121791 - L1M4 LINE L1 -944 5202 4668 8 1469 723 274 52 22 chr9 115954393 115954679 -8121493 - B3 SINE B2 -5 211 1 8 1469 473 284 116 12 chr9 115954903 115955067 -8121105 + B3A SINE B2 3 183 -15 8 1469 310 123 86 0 chr9 115955077 115955239 -8120933 + (CATA)n Simple_repeat Simple_repeat 4 179 0 8 1469 396 0 0 0 chr9 115955323 115955367 -8120805 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1469 490 321 0 0 chr9 115955386 115955523 -8120649 + ID_B1 SINE B4 81 217 -7 8 1469 362 186 14 0 chr9 115955548 115955618 -8120554 + B4 SINE B4 2 72 -220 8 1469 240 309 152 20 chr9 115955636 115955735 -8120437 + B4 SINE B4 117 228 -64 8 1469 701 286 77 20 chr9 115955739 115955985 -8120187 + B4A SINE B4 9 268 -24 8 1469 710 229 0 40 chr9 115956175 115956325 -8119847 + B1_Mur2 SINE Alu 3 146 -3 8 1469 235 301 110 0 chr9 115956793 115956866 -8119306 - ID4_ SINE ID 0 83 3 8 1469 21 0 0 0 chr9 115957205 115957226 -8118946 + AT_rich Low_complexity Low_complexity 1 21 0 8 1469 201 233 0 0 chr9 115957576 115957619 -8118553 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1469 223 330 54 21 chr9 115957831 115957924 -8118248 - PB1D10 SINE Alu -21 96 1 8 1469 268 287 72 80 chr9 115957924 115957995 -8118177 - B4 SINE B4 -207 85 16 8 1469 549 30 0 0 chr9 115958802 115958869 -8117303 + (GA)n Simple_repeat Simple_repeat 1 67 0 8 1469 273 250 16 32 chr9 115959251 115959313 -8116859 + ID_B1 SINE B4 133 193 -31 8 1469 936 269 91 37 chr9 115959917 115960268 -8115904 + ORR1D2 LTR MaLR 1 370 0 8 1469 469 288 164 0 chr9 115960358 115960535 -8115637 + B3 SINE B2 1 206 -10 8 1469 577 314 76 47 chr9 115961153 115961364 -8114808 + B4 SINE B4 73 289 -3 8 1469 897 254 134 27 chr9 115961677 115962005 -8114167 + RMER13A LTR ERVK 104 466 -394 8 1469 188 293 35 0 chr9 115962274 115962332 -8113840 + MIRb SINE MIR 134 193 -75 8 1469 732 80 0 0 chr9 115962483 115962583 -8113589 + (TG)n Simple_repeat Simple_repeat 2 101 0 8 1469 1013 248 37 37 chr9 115962728 115962996 -8113176 - B4A SINE B4 -5 287 20 8 1469 402 39 0 0 chr9 115963476 115963528 -8112644 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1469 632 340 95 33 chr9 115963650 115964009 -8112163 - MLT1H LTR MaLR -114 435 55 8 1469 507 200 27 37 chr9 115964013 115964146 -8112026 + MTEa LTR MaLR 240 390 -29 8 1469 504 277 115 46 chr9 115964154 115964328 -8111844 - B3 SINE B2 -30 186 1 8 1469 185 283 0 91 chr9 115964528 115964594 -8111578 - MIR SINE MIR -105 157 98 8 1469 891 97 0 0 chr9 115964797 115964951 -8111221 + (CA)n Simple_repeat Simple_repeat 1 154 0 8 1469 34 24 0 0 chr9 115965112 115965153 -8111019 + AT_rich Low_complexity Low_complexity 1 41 0 8 1469 277 286 39 0 chr9 115965240 115965317 -8110855 + ID2 SINE ID 1 80 -3 8 1469 464 299 20 33 chr9 115965409 115965560 -8110612 - B4A SINE B4 -7 285 137 8 1469 2180 120 3 3 chr9 115965560 115965878 -8110294 + ORR1A3 LTR MaLR 1 318 -8 8 1469 402 287 95 27 chr9 115965868 115966015 -8110157 - B4A SINE B4 -135 157 1 8 1469 188 224 0 15 chr9 115966539 115966607 -8109565 + GA-rich Low_complexity Low_complexity 3 69 0 8 1469 24 0 0 0 chr9 115966811 115966835 -8109337 + AT_rich Low_complexity Low_complexity 1 24 0 8 1469 506 217 95 9 chr9 115968082 115968198 -8107974 - B1_Mur4 SINE Alu -7 143 18 8 1469 308 186 105 0 chr9 115968304 115968386 -8107786 - MTEb LTR MaLR -15 404 276 8 1469 339 242 40 48 chr9 115968384 115968510 -8107662 + B3A SINE B2 72 196 -2 8 1469 306 302 23 0 chr9 115968755 115968841 -8107331 + L1MEg LINE L1 1882 1969 -4115 8 1469 681 268 77 61 chr9 115969291 115969537 -8106635 + B4 SINE B4 3 252 -40 8 1469 216 0 0 0 chr9 115969549 115969573 -8106599 + (CCA)n Simple_repeat Simple_repeat 2 25 0 8 1469 438 242 75 8 chr9 115969696 115969829 -8106343 - B1F SINE Alu -2 147 6 8 1469 183 238 75 97 chr9 115970030 115970123 -8106049 - MER5B DNA MER1_type -69 109 19 8 1469 484 230 196 7 chr9 115970333 115970486 -8105686 + B3A SINE B2 1 182 -16 8 1469 444 149 0 0 chr9 115970835 115970929 -8105243 + (TG)n Simple_repeat Simple_repeat 2 95 0 9 1469 649 240 0 32 chr9 115971358 115971523 -8104649 + B3A SINE B2 47 186 -9 9 1469 243 0 0 0 chr9 115971570 115971597 -8104575 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1469 1176 278 52 20 chr9 115972215 115972560 -8103612 - ORR1E LTR MaLR -3 356 1 9 1469 647 294 24 61 chr9 115972905 115973151 -8103021 - B4A SINE B4 -48 244 8 9 1469 223 287 0 84 chr9 115974026 115974121 -8102051 + (CGTG)n Simple_repeat Simple_repeat 3 89 0 9 1469 36 62 0 0 chr9 115974484 115974548 -8101624 + AT_rich Low_complexity Low_complexity 1 64 0 9 1469 498 184 18 9 chr9 115974599 115974709 -8101463 - RMER1B Other Other 0 1066 956 9 1469 238 246 64 115 chr9 115974709 115974721 -8101451 + RLTR25B LTR ERVK 436 447 -581 9 1469 545 64 13 0 chr9 115974721 115974799 -8101373 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 9 1469 238 246 64 115 chr9 115974799 115974864 -8101308 + RLTR25B LTR ERVK 448 509 -519 9 1469 625 190 0 0 chr9 115974807 115974907 -8101265 + B1_Mus2 SINE Alu 48 147 0 9 1469 1029 178 41 30 chr9 115974909 115975106 -8101066 - RMER1B Other Other -130 936 738 9 1469 740 161 22 0 chr9 115975143 115975280 -8100892 - RLTR15 LTR ERVK -160 199 60 9 1469 863 206 52 57 chr9 115975280 115975491 -8100681 - RMER1B Other Other -766 300 91 9 1469 22 0 0 0 chr9 115975599 115975621 -8100551 + AT_rich Low_complexity Low_complexity 1 22 0 9 1469 488 30 15 0 chr9 115975631 115975697 -8100475 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 1469 381 272 126 16 chr9 115975702 115975829 -8100343 - RSINE1 SINE B4 -22 143 3 9 1469 287 259 81 24 chr9 115975851 115975950 -8100222 - MTEa LTR MaLR -9 370 273 9 1469 249 256 112 79 chr9 115976723 115976750 -8099422 - B4A SINE B4 -3 289 269 9 1469 309 89 0 0 chr9 115976750 115976795 -8099377 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1469 249 256 112 79 chr9 115976795 115976856 -8099316 - B4A SINE B4 -24 268 198 9 1469 488 122 12 0 chr9 115976856 115976938 -8099234 + (TC)n Simple_repeat Simple_repeat 1 83 0 9 1469 522 269 115 47 chr9 115976938 115977129 -8099043 - B4A SINE B4 -86 206 3 9 1469 872 179 52 10 chr9 115979078 115979270 -8096902 - Lx7 LINE L1 -310 7386 7187 9 1469 726 223 70 32 chr9 115979280 115979465 -8096707 - B3 SINE B2 -24 192 1 9 1469 326 250 40 0 chr9 115979476 115979552 -8096620 - PB1D10 SINE Alu 0 117 39 9 1469 328 224 14 29 chr9 115980852 115980921 -8095251 + RSINE1 SINE B4 81 148 -17 9 1469 321 26 0 0 chr9 115980938 115980976 -8095196 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 9 1469 801 152 0 0 chr9 115980978 115981116 -8095056 + GA-rich Low_complexity Low_complexity 1 138 0 9 1469 396 0 0 0 chr9 115982122 115982166 -8094006 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1469 263 301 14 14 chr9 115982387 115982454 -8093718 + B4A SINE B4 143 209 -83 9 1469 1041 284 121 32 chr9 115982454 115982825 -8093347 + MTD LTR MaLR 1 404 -15 9 1469 507 272 86 0 chr9 115983594 115983756 -8092416 + MER5A DNA MER1_type 14 189 0 9 1469 596 59 12 0 chr9 115983920 115984005 -8092167 + (TC)n Simple_repeat Simple_repeat 2 87 0 9 1469 555 16 0 0 chr9 115984005 115984068 -8092104 + (TA)n Simple_repeat Simple_repeat 1 64 0 9 1469 390 159 0 0 chr9 115984266 115984335 -8091837 + (CATA)n Simple_repeat Simple_repeat 4 72 0 9 1469 594 103 0 0 chr9 115984336 115984423 -8091749 + (GA)n Simple_repeat Simple_repeat 2 88 0 9 1469 266 322 95 9 chr9 115985700 115985816 -8090356 + B4 SINE B4 1 126 -166 9 1469 30 0 0 0 chr9 115985882 115985912 -8090260 + AT_rich Low_complexity Low_complexity 1 30 0 9 1469 2182 180 33 51 chr9 115986724 115987152 -8089020 - MTC LTR MaLR 0 421 2 9 1469 317 206 0 36 chr9 115987834 115987945 -8088227 + CT-rich Low_complexity Low_complexity 1 107 0 9 1469 339 363 20 7 chr9 115987947 115988094 -8088078 - HAL1-3A_ME LINE L1 -423 2435 2287 9 1469 665 233 144 59 chr9 115989921 115990108 -8086064 + B3 SINE B2 3 205 -11 9 1469 258 366 116 27 chr9 115990361 115990690 -8085482 - L2 LINE L2 -807 2612 2255 9 1469 237 74 71 41 chr9 115991328 115991426 -8084746 + A-rich Low_complexity Low_complexity 3 103 0 9 1469 612 62 0 0 chr9 115991657 115991738 -8084434 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 9 1469 658 242 70 50 chr9 115991738 115991938 -8084234 - B3A SINE B2 -12 204 1 9 1469 22 0 0 0 chr9 115992364 115992386 -8083786 + AT_rich Low_complexity Low_complexity 1 22 0 9 1469 391 326 105 0 chr9 115993187 115993368 -8082804 + ORR1E LTR MaLR 1 200 -159 9 1469 187 202 54 116 chr9 115993703 115993815 -8082357 + L3 LINE CR1 4116 4220 -269 9 1469 314 316 10 21 chr9 115993861 115993958 -8082214 + ORR1E LTR MaLR 224 319 -60 9 1469 213 121 0 0 chr9 115994060 115994093 -8082079 + (CACG)n Simple_repeat Simple_repeat 3 35 0 9 1469 180 0 0 0 chr9 115994343 115994363 -8081809 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1469 1194 54 0 13 chr9 115994363 115994512 -8081660 - B1_Mus1 SINE Alu 0 148 2 9 1469 207 0 0 0 chr9 115994715 115994738 -8081434 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1469 197 176 0 136 chr9 115995469 115995528 -8080644 - L3 LINE CR1 -4403 86 36 9 1469 685 254 55 55 chr9 115995755 115995938 -8080234 - B4 SINE B4 -4 288 106 9 1469 263 271 76 86 chr9 115995846 115995951 -8080221 - B1F2 SINE Alu -35 114 11 9 1469 471 48 0 0 chr9 115996173 115996235 -8079937 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1469 384 302 79 28 chr9 115996505 115996682 -8079490 + RMER15 LTR ERVL 374 559 -16 9 1469 449 261 53 71 chr9 115997838 115998089 -8078083 - B4 SINE B4 0 292 6 9 1470 230 159 0 0 chr9 115999111 115999155 -8077017 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 1470 234 260 0 0 chr9 115999306 115999356 -8076816 + (CTG)n Simple_repeat Simple_repeat 2 51 0 9 1470 793 223 171 19 chr9 115999790 116000000 -8076172 - B4A SINE B4 0 292 51 9 1470 44 20 0 0 chr9 116002615 116002666 -8073506 + AT_rich Low_complexity Low_complexity 1 51 0 1 1470 365 237 57 17 chr9 116002752 116002879 -8073293 + L1MB4 LINE L1 5803 5936 -238 2 1470 373 215 57 39 chr9 116003181 116003288 -8072884 + MLT1A1 LTR MaLR 308 396 -12 3 1470 390 154 12 93 chr9 116003449 116003535 -8072637 + ID4_ SINE ID 1 79 -4 4 1470 243 0 0 0 chr9 116003540 116003567 -8072605 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1470 258 125 0 0 chr9 116003567 116003615 -8072557 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1470 22 35 0 0 chr9 116004107 116004136 -8072036 + AT_rich Low_complexity Low_complexity 1 29 0 7 1470 666 37 0 0 chr9 116004995 116005076 -8071096 + (TTCC)n Simple_repeat Simple_repeat 1 81 0 8 1470 576 283 137 33 chr9 116005542 116005754 -8070418 + MTE2b LTR MaLR 125 358 -21 9 1470 461 261 22 29 chr9 116006197 116006335 -8069837 + B1F SINE Alu 5 141 -8 1 1470 180 111 0 0 chr9 116006340 116006367 -8069805 + (CAGT)n Simple_repeat Simple_repeat 4 30 0 1 1470 204 40 0 0 chr9 116006426 116006451 -8069721 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 1 1470 584 254 21 28 chr9 116006457 116006599 -8069573 - RSINE1 SINE B4 -24 141 1 1 1470 494 315 7 0 chr9 116007667 116007813 -8068359 + RSINE1 SINE B4 3 149 -16 1 1470 330 26 0 0 chr9 116009555 116009594 -8066578 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1 1470 777 306 59 39 chr9 116009687 116009767 -8066405 + B4 SINE B4 1 85 -207 1 1470 180 0 0 0 chr9 116009767 116009787 -8066385 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1470 777 306 59 39 chr9 116009787 116009992 -8066180 + B4 SINE B4 86 292 0 1 1470 407 78 16 0 chr9 116010002 116010066 -8066106 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1470 416 307 158 40 chr9 116011508 116011989 -8064183 + L1MC4a LINE L1 6964 7501 -381 1 1470 449 290 8 39 chr9 116012250 116012379 -8063793 - B1F SINE Alu -1 148 24 2 1470 256 241 0 0 chr9 116012412 116012466 -8063706 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1470 393 286 268 17 chr9 116012466 116012697 -8063475 - B4A SINE B4 0 292 4 2 1470 1437 207 95 70 chr9 116012984 116013384 -8062788 + MTD LTR MaLR 2 411 -8 2 1470 200 170 0 41 chr9 116013511 116013560 -8062612 + G-rich Low_complexity Low_complexity 5 51 0 2 1470 331 363 82 32 chr9 116014399 116014681 -8061491 - Lx8 LINE L1 -2 7471 7176 2 1470 188 70 0 109 chr9 116014733 116014797 -8061375 + T-rich Low_complexity Low_complexity 2 58 0 2 1470 943 259 28 5 chr9 116014805 116015018 -8061154 - ID_B1 SINE B4 -5 219 2 2 1470 658 136 78 91 chr9 116015259 116015413 -8060759 - B3A SINE B2 -1 197 41 2 1470 283 232 0 0 chr9 116015976 116016032 -8060140 - B3A SINE B2 -137 61 6 2 1470 804 265 55 22 chr9 116016966 116017240 -8058932 + B4A SINE B4 2 284 -8 2 1470 315 49 0 0 chr9 116017249 116017290 -8058882 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1470 441 0 0 0 chr9 116017290 116017338 -8058834 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1470 509 279 62 75 chr9 116017783 116018105 -8058067 + L1MA4 LINE L1 5718 6035 -256 3 1470 876 252 114 9 chr9 116018210 116018438 -8057734 + B4A SINE B4 32 283 -9 3 1470 347 19 0 88 chr9 116018467 116018524 -8057648 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1470 644 328 173 8 chr9 116019725 116019974 -8056198 + B4 SINE B4 2 291 -1 3 1470 354 23 0 0 chr9 116020020 116020063 -8056109 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1470 917 308 88 19 chr9 116020505 116020813 -8055359 + ORR1E LTR MaLR 26 354 -5 3 1470 1177 159 62 0 chr9 116020850 116021058 -8055114 + URR1B DNA MER1_type 5 225 0 3 1470 983 245 46 0 chr9 116022013 116022209 -8053963 + B3 SINE B2 9 213 -3 3 1470 386 237 42 120 chr9 116022262 116022314 -8053858 - B2_Mm2 SINE B2 -4 191 147 4 1470 552 68 0 0 chr9 116022314 116022387 -8053785 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1470 599 230 22 22 chr9 116022387 116022526 -8053646 - B3A SINE B2 -46 152 15 4 1470 345 24 0 0 chr9 116023622 116023664 -8052508 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1470 908 228 25 10 chr9 116024276 116024475 -8051697 - B3 SINE B2 -1 215 14 4 1470 230 81 0 26 chr9 116024762 116024800 -8051372 + (GAGAA)n Simple_repeat Simple_repeat 3 39 0 4 1470 567 0 0 0 chr9 116024803 116024866 -8051306 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 4 1470 368 338 90 81 chr9 116024881 116025004 -8051168 + Charlie4a DNA MER1_type 1 131 -377 4 1470 817 203 33 60 chr9 116025004 116025051 -8051121 - B3 SINE B2 -4 212 165 4 1470 456 19 0 0 chr9 116025051 116025104 -8051068 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1470 817 203 33 60 chr9 116025104 116025271 -8050901 - B3 SINE B2 -52 164 5 4 1470 368 338 90 81 chr9 116025271 116025479 -8050693 + Charlie4a DNA MER1_type 132 335 -173 4 1470 602 288 124 15 chr9 116026502 116026703 -8049469 - ID_B1 SINE B4 0 224 2 4 1470 1141 43 0 0 chr9 116026738 116026877 -8049295 - B1_Mus2 SINE Alu 0 147 9 5 1470 592 229 39 77 chr9 116026743 116026899 -8049273 - B4 SINE B4 -71 221 72 5 1470 495 33 0 0 chr9 116027025 116027086 -8049086 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1470 305 187 13 0 chr9 116027088 116027163 -8049009 + (TAGG)n Simple_repeat Simple_repeat 4 79 0 5 1470 289 340 36 73 chr9 116027309 116027474 -8048698 + MER5A1 DNA MER1_type 6 164 -2 5 1470 1065 260 24 44 chr9 116028136 116028434 -8047738 + B4 SINE B4 1 292 0 5 1470 252 167 0 0 chr9 116028434 116028482 -8047690 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1470 381 131 0 0 chr9 116028956 116029017 -8047155 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1470 453 275 163 6 chr9 116029022 116029194 -8046978 + MTEa LTR MaLR 74 272 -107 5 1470 464 146 25 127 chr9 116029726 116029844 -8046328 + MT2B LTR ERVL 159 264 -337 5 1470 1017 40 0 0 chr9 116029743 116029867 -8046305 + B1_Mus1 SINE Alu 13 136 -12 6 1470 732 23 0 0 chr9 116029867 116029953 -8046219 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 6 1470 495 0 0 0 chr9 116029953 116030007 -8046165 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 6 1470 668 159 26 34 chr9 116030194 116030311 -8045861 - B3A SINE B2 -82 116 1 6 1470 621 244 124 76 chr9 116030378 116030653 -8045519 - B4 SINE B4 -1 291 4 6 1470 21 0 0 0 chr9 116030861 116030882 -8045290 + AT_rich Low_complexity Low_complexity 1 21 0 6 1470 483 18 0 0 chr9 116031462 116031518 -8044654 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 6 1470 717 269 9 58 chr9 116031761 116031986 -8044186 + ID_B1 SINE B4 3 216 -8 6 1470 198 143 0 0 chr9 116032002 116032037 -8044135 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1470 261 0 0 0 chr9 116032068 116032097 -8044075 + (CTGGGG)n Simple_repeat Simple_repeat 2 30 0 6 1470 398 270 39 22 chr9 116032655 116032699 -8043473 + Lx9 LINE L1 7462 7506 -138 7 1470 360 0 0 0 chr9 116032699 116032739 -8043433 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1470 398 270 39 22 chr9 116032739 116032872 -8043300 + Lx9 LINE L1 7507 7642 -2 7 1470 456 204 233 0 chr9 116033035 116033138 -8043034 - ID_B1 SINE B4 -4 220 94 7 1470 300 282 25 25 chr9 116033426 116033506 -8042666 - ID4 SINE ID -1 82 3 7 1470 678 225 0 53 chr9 116034230 116034380 -8041792 + B1_Mur1 SINE Alu 3 144 -5 7 1470 268 368 0 39 chr9 116035014 116035144 -8041028 + RMER5 LTR ERV1 400 524 -10 7 1470 1798 184 94 3 chr9 116035169 116035551 -8040621 + MTD LTR MaLR 3 419 0 7 1470 413 309 45 0 chr9 116036084 116036194 -8039978 + B4 SINE B4 113 227 -65 7 1470 619 314 9 33 chr9 116036195 116036409 -8039763 + ID_B1 SINE B4 3 211 -13 7 1470 224 222 0 0 chr9 116036413 116036458 -8039714 + GA-rich Low_complexity Low_complexity 4 48 0 7 1470 821 262 30 86 chr9 116036550 116036854 -8039318 + B4A SINE B4 6 292 0 8 1470 210 37 0 0 chr9 116036985 116037012 -8039160 + (TTG)n Simple_repeat Simple_repeat 1 27 0 8 1470 1139 85 0 0 chr9 116037013 116037154 -8039018 - B1_Mus2 SINE Alu -6 141 1 8 1470 575 239 68 83 chr9 116037536 116037741 -8038431 + RMER30 DNA MER1_type 1 202 0 8 1470 315 71 0 0 chr9 116037883 116037925 -8038247 + (CATA)n Simple_repeat Simple_repeat 2 43 0 8 1470 344 239 205 27 chr9 116038300 116038412 -8037760 + B1F SINE Alu 17 148 -1 8 1470 471 260 78 47 chr9 116038504 116038633 -8037539 + B4 SINE B4 160 292 0 8 1470 21 36 0 0 chr9 116038677 116038705 -8037467 + AT_rich Low_complexity Low_complexity 1 28 0 8 1470 1013 214 162 12 chr9 116039418 116039659 -8036513 - B4 SINE B4 -14 278 2 8 1470 330 298 107 81 chr9 116040044 116040241 -8035931 - B3 SINE B2 0 216 15 8 1470 398 83 83 0 chr9 116040207 116040267 -8035905 - ORR1E LTR MaLR -292 67 3 9 1470 354 220 79 10 chr9 116040508 116040609 -8035563 + ORR1E LTR MaLR 234 341 -18 9 1470 294 29 0 0 chr9 116040985 116041020 -8035152 + (TAA)n Simple_repeat Simple_repeat 1 35 0 9 1470 730 280 72 10 chr9 116041225 116041434 -8034738 + ID_B1 SINE B4 1 222 -2 9 1470 629 216 110 6 chr9 116042263 116042426 -8033746 - MTEa LTR MaLR 0 379 200 9 1470 1181 216 121 24 chr9 116043477 116043767 -8032405 + ORR1D1 LTR MaLR 24 341 -33 9 1470 680 290 6 12 chr9 116043778 116043949 -8032223 - B3A SINE B2 -28 170 1 9 1470 209 298 0 0 chr9 116043951 116044008 -8032164 - MER5B DNA MER1_type -114 64 8 9 1470 697 232 102 15 chr9 116044068 116044265 -8031907 + ID_B1 SINE B4 1 214 -10 9 1470 231 292 0 0 chr9 116044547 116044612 -8031560 + GA-rich Low_complexity Low_complexity 3 67 0 9 1470 229 102 0 58 chr9 116044612 116044664 -8031508 + G-rich Low_complexity Low_complexity 4 52 0 1 1470 294 290 0 0 chr9 116045666 116045735 -8030437 + B4 SINE B4 4 72 -220 1 1470 258 305 69 50 chr9 116046470 116046629 -8029543 - RSINE1 SINE B4 -1 164 3 1 1470 706 341 99 23 chr9 116046876 116047175 -8028997 - MLT2C1 LTR ERVL -95 369 43 1 1470 1015 125 17 0 chr9 116047232 116047408 -8028764 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 1470 205 88 29 0 chr9 116047408 116047442 -8028730 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 1 1470 560 283 6 126 chr9 116047453 116047627 -8028545 + B4 SINE B4 117 269 -23 1 1470 414 0 0 0 chr9 116047627 116047673 -8028499 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1470 1121 245 31 24 chr9 116048411 116048700 -8027472 + B4 SINE B4 2 292 0 1 1470 411 235 77 19 chr9 116049040 116049144 -8027028 + PB1D10 SINE Alu 1 110 -7 1 1470 1256 41 7 0 chr9 116049166 116049313 -8026859 + B1_Mus1 SINE Alu 1 148 0 1 1470 189 94 0 0 chr9 116049315 116049347 -8026825 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 1 1470 321 346 7 15 chr9 116049351 116049486 -8026686 + GA-rich Low_complexity Low_complexity 2 135 0 1 1470 312 147 0 0 chr9 116050310 116050385 -8025787 + (CTGGGG)n Simple_repeat Simple_repeat 1 75 0 1 1470 531 133 6 81 chr9 116050875 116050891 -8025281 + polypyrimidine Low_complexity Low_complexity 148 162 0 1 1470 917 103 17 22 chr9 116050891 116051070 -8025102 + (CCCCCT)n Simple_repeat Simple_repeat 1 178 0 1 1470 531 133 6 81 chr9 116051070 116051225 -8024947 + CT-rich Low_complexity Low_complexity 4 147 0 1 1470 447 68 0 0 chr9 116051330 116051389 -8024783 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1470 253 330 22 11 chr9 116051418 116051507 -8024665 - B4A SINE B4 -199 93 4 1 1470 1275 224 25 81 chr9 116051633 116051779 -8024393 - MTD LTR MaLR -22 397 234 1 1470 216 0 0 0 chr9 116051779 116051803 -8024369 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1470 1275 226 28 83 chr9 116051803 116052035 -8024137 - MTD LTR MaLR -158 261 6 1 1470 764 255 50 5 chr9 116052258 116052459 -8023713 + B3 SINE B2 1 210 -6 1 1470 311 254 0 0 chr9 116053158 116053217 -8022955 + ID4_ SINE ID 12 70 -13 1 1470 201 213 0 0 chr9 116053222 116053269 -8022903 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1470 511 272 164 1 chr9 116053921 116054085 -8022087 + B4A SINE B4 7 203 -89 1 1470 506 306 8 8 chr9 116054097 116054222 -8021950 + RSINE1 SINE B4 8 132 -33 1 1470 591 53 0 0 chr9 116054226 116054301 -8021871 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1470 365 290 135 68 chr9 116054981 116055114 -8021058 - RSINE1 SINE B4 -12 153 12 1 1470 191 36 0 35 chr9 116055125 116055154 -8021018 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1470 871 267 9 9 chr9 116055155 116055378 -8020794 - ID_B1 SINE B4 0 224 2 1 1470 756 261 43 64 chr9 116055995 116056277 -8019895 + B4A SINE B4 1 276 -16 1 1470 467 318 60 50 chr9 116056340 116056522 -8019650 - MLT1A1 LTR MaLR -52 356 173 1 1470 308 232 0 18 chr9 116056590 116056647 -8019525 - ID4_ SINE ID -25 58 3 1 1470 339 85 0 0 chr9 116056939 116056986 -8019186 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1470 959 281 25 22 chr9 116057047 116057323 -8018849 - B4 SINE B4 -14 278 2 1 1470 648 324 34 11 chr9 116057862 116058124 -8018048 - B4A SINE B4 -20 272 5 1 1470 198 0 0 0 chr9 116058417 116058439 -8017733 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 1470 280 167 182 0 chr9 116058835 116058901 -8017271 + ID2 SINE ID 3 80 -3 1 1470 441 261 68 138 chr9 116059013 116059324 -8016848 + B4 SINE B4 1 289 -3 1 1470 282 29 0 0 chr9 116059585 116059620 -8016552 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1470 21 0 0 0 chr9 116060201 116060222 -8015950 + AT_rich Low_complexity Low_complexity 1 21 0 1 1470 186 43 0 0 chr9 116060312 116060335 -8015837 + (G)n Simple_repeat Simple_repeat 1 23 0 1 1470 279 54 0 0 chr9 116060652 116060689 -8015483 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1470 336 277 75 69 chr9 116060781 116060940 -8015232 - B4A SINE B4 -131 161 2 1 1470 336 300 11 0 chr9 116060965 116061153 -8015019 + (TG)n Simple_repeat Simple_repeat 1 190 0 1 1470 359 252 103 85 chr9 116061153 116061318 -8014854 - B4 SINE B4 -122 170 3 1 1470 455 254 86 36 chr9 116061608 116061747 -8014425 + B4A SINE B4 64 209 -83 1 1470 495 301 88 52 chr9 116061787 116061980 -8014192 - ID_B1 SINE B4 -19 205 6 1 1470 436 290 39 51 chr9 116062165 116062343 -8013829 + MER5B DNA MER1_type 1 176 -2 1 1470 708 282 63 56 chr9 116062370 116062640 -8013532 + B4 SINE B4 1 272 -20 1 1470 192 77 0 0 chr9 116062746 116062772 -8013400 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 1470 525 233 177 6 chr9 116062773 116062954 -8013218 + B3 SINE B2 5 216 0 1 1470 599 319 34 48 chr9 116063475 116063560 -8012612 - Lx8 LINE L1 -37 7436 7349 1 1470 210 118 0 0 chr9 116063560 116063594 -8012578 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 1 1470 599 319 34 48 chr9 116063594 116063801 -8012371 - Lx8 LINE L1 -125 7348 7148 1 1470 583 244 16 157 chr9 116063832 116063928 -8012244 + RSINE1 SINE B4 4 97 -68 1 1470 2267 104 9 6 chr9 116063928 116064256 -8011916 - ORR1A4 LTR MaLR 0 329 1 1 1470 583 244 16 157 chr9 116064256 116064344 -8011828 + RSINE1 SINE B4 98 162 -3 1 1470 369 0 0 0 chr9 116064344 116064385 -8011787 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1 1470 855 261 5 33 chr9 116064414 116064628 -8011544 + ID_B1 SINE B4 2 209 -15 1 1470 859 194 80 3 chr9 116064628 116064828 -8011344 + ORR1D1 LTR MaLR 2 222 -148 1 1470 983 233 19 69 chr9 116064804 116065164 -8011008 - RLTR15 LTR ERVK -17 342 1 1 1470 570 240 8 8 chr9 116065159 116065180 -8010992 + ORR1D1 LTR MaLR 149 169 -205 1 1470 480 77 0 0 chr9 116065180 116065245 -8010927 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 1470 570 240 8 8 chr9 116065245 116065353 -8010819 + ORR1D1 LTR MaLR 170 277 -97 1 1470 824 218 19 113 chr9 116066076 116066288 -8009884 - B3A SINE B2 0 198 1 1 1470 341 282 143 16 chr9 116066657 116066783 -8009389 - ID_B1 SINE B4 0 224 83 1 1470 814 279 19 9 chr9 116067077 116067287 -8008885 - B3 SINE B2 -3 213 2 1 1470 326 256 87 30 chr9 116067420 116067579 -8008593 + MIRb SINE MIR 91 260 -8 1 1470 318 276 0 0 chr9 116067771 116067847 -8008325 - ID4_ SINE ID -6 77 2 1 1470 1231 302 42 0 chr9 116068002 116068359 -8007813 + MTEb LTR MaLR 6 377 -2 1 1470 753 287 71 39 chr9 116068827 116069033 -8007139 + B4A SINE B4 1 212 -80 1 1470 342 0 0 0 chr9 116069033 116069071 -8007101 + (CAA)n Simple_repeat Simple_repeat 1 38 0 1 1470 753 287 71 39 chr9 116069071 116069147 -8007025 + B4A SINE B4 213 291 -1 1 1470 409 308 22 22 chr9 116070718 116070854 -8005318 + RSINE1 SINE B4 4 139 -26 1 1470 260 280 43 11 chr9 116071444 116071538 -8004634 + B4A SINE B4 8 104 -188 1 1470 409 250 11 11 chr9 116071724 116071813 -8004359 - Lx8 LINE L1 -182 7291 7203 1 1470 327 343 30 10 chr9 116071867 116071967 -8004205 + B4 SINE B4 190 291 -1 1 1470 180 77 0 0 chr9 116071981 116072007 -8004165 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1470 254 244 101 13 chr9 116072675 116072754 -8003418 + B4 SINE B4 2 87 -205 1 1470 552 248 117 0 chr9 116072753 116072890 -8003282 + B3A SINE B2 8 160 -38 1 1470 213 39 0 0 chr9 116072892 116072918 -8003254 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1470 426 39 0 0 chr9 116072918 116072969 -8003203 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1470 871 276 166 46 chr9 116073351 116073726 -8002446 - Arthur1 DNA Tip100 -1 3946 3539 1 1470 540 276 68 31 chr9 116073726 116073917 -8002255 - B3A SINE B2 0 198 1 1 1470 871 276 166 46 chr9 116073917 116074066 -8002106 - Arthur1 DNA Tip100 -409 3538 3359 1 1470 1682 193 84 25 chr9 116074557 116074951 -8001221 + MTD LTR MaLR 1 417 -2 1 1470 24 0 0 0 chr9 116076157 116076181 -7999991 + AT_rich Low_complexity Low_complexity 1 24 0 1 1470 260 218 0 18 chr9 116076223 116076279 -7999893 + CT-rich Low_complexity Low_complexity 2 56 0 1 1470 250 192 201 0 chr9 116076299 116076403 -7999769 - URR1B DNA MER1_type -107 118 1 1 1470 223 281 0 111 chr9 116076879 116076951 -7999221 + BC1_Mm scRNA scRNA 6 69 -83 1 1470 986 255 10 0 chr9 116076897 116077101 -7999071 + ID_B1 SINE B4 17 222 -2 1 1470 813 90 0 0 chr9 116077774 116077907 -7998265 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 1470 422 233 33 0 chr9 116078474 116078585 -7997587 + B1F SINE Alu 1 126 -1 1 1470 183 80 0 0 chr9 116078608 116078633 -7997539 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1470 297 0 0 0 chr9 116078744 116078777 -7997395 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1470 187 345 82 7 chr9 116079335 116079481 -7996691 - L2c LINE L2 -181 3206 3050 1 1470 759 174 106 111 chr9 116079508 116079734 -7996438 - URR1A DNA MER1_type -1 225 1 1 1470 570 230 30 108 chr9 116080470 116080636 -7995536 + B3A SINE B2 46 198 0 1 1470 261 83 0 0 chr9 116081321 116081357 -7994815 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1470 438 314 49 84 chr9 116081408 116081693 -7994479 + B4A SINE B4 4 278 -14 1 1470 24 0 0 0 chr9 116081841 116081865 -7994307 + AT_rich Low_complexity Low_complexity 1 24 0 1 1470 604 292 138 13 chr9 116082584 116082823 -7993349 - B4A SINE B4 -21 271 3 1 1470 414 0 0 0 chr9 116083080 116083126 -7993046 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1470 269 307 40 0 chr9 116083192 116083293 -7992879 - MIR3 SINE MIR -11 197 93 1 1470 236 309 99 9 chr9 116084847 116084958 -7991214 + MER112 DNA MER1_type 131 251 -10 1 1470 407 239 43 52 chr9 116084958 116085073 -7991099 - MER5A1 DNA MER1_type -7 159 46 1 1470 469 186 37 47 chr9 116085212 116085299 -7990873 + B1_Mur4 SINE Alu 45 127 -23 1 1470 207 0 0 0 chr9 116085299 116085322 -7990850 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1470 469 186 37 47 chr9 116085322 116085341 -7990831 + B1_Mur4 SINE Alu 128 150 0 1 1470 205 205 0 0 chr9 116085511 116085550 -7990622 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1470 1146 61 7 26 chr9 116085587 116085738 -7990434 - B1_Mus1 SINE Alu 0 148 1 2 1470 466 310 36 86 chr9 116085762 116085984 -7990188 - B3 SINE B2 -5 211 1 2 1470 400 311 59 0 chr9 116085995 116086130 -7990042 - B4A SINE B4 -83 209 67 2 1470 467 226 19 10 chr9 116086793 116086896 -7989276 - B4A SINE B4 -83 209 106 2 1470 266 253 25 62 chr9 116086828 116086908 -7989264 - B1F2 SINE Alu -60 89 13 2 1470 222 207 0 0 chr9 116086910 116086968 -7989204 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1470 580 246 20 34 chr9 116087051 116087198 -7988974 - ID_B1 SINE B4 -1 223 79 2 1470 270 331 40 86 chr9 116087087 116087285 -7988887 - MT2B LTR ERVL -341 260 72 2 1470 2314 123 34 16 chr9 116087667 116088046 -7988126 + RMER4A LTR ERVK 1 386 -80 2 1470 766 186 11 11 chr9 116088047 116088226 -7987946 + CT-rich Low_complexity Low_complexity 2 180 0 2 1470 627 197 34 8 chr9 116088246 116088364 -7987808 + RMER4A LTR ERVK 346 466 0 2 1470 530 131 207 37 chr9 116088366 116088501 -7987671 + RMER4A LTR ERVK 308 465 -1 2 1470 632 276 16 31 chr9 116088501 116088694 -7987478 + B4 SINE B4 24 213 -79 2 1470 297 0 0 0 chr9 116088695 116088728 -7987444 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1470 378 276 110 15 chr9 116089092 116089228 -7986944 + B1F SINE Alu 1 149 0 2 1470 681 212 7 14 chr9 116089325 116089473 -7986699 + RSINE1 SINE B4 2 148 -17 2 1470 26 0 0 0 chr9 116089571 116089597 -7986575 + AT_rich Low_complexity Low_complexity 1 26 0 2 1470 383 264 12 48 chr9 116089632 116089799 -7986373 - RSINE1 SINE B4 0 165 5 2 1470 356 307 100 24 chr9 116090188 116090332 -7985840 - MIRc SINE MIR -105 163 13 2 1470 232 323 100 40 chr9 116090334 116090534 -7985638 + MER34 LTR ERV1 7 218 -324 2 1470 827 246 107 3 chr9 116090903 116091173 -7984999 + ORR1D2 LTR MaLR 4 359 -11 2 1470 837 248 159 13 chr9 116091289 116091522 -7984650 + MTEb LTR MaLR 4 270 -109 2 1470 360 0 0 0 chr9 116091617 116091657 -7984515 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2 1470 234 254 13 53 chr9 116091967 116092042 -7984130 - MTEa LTR MaLR -14 365 294 2 1470 1215 261 145 3 chr9 116092249 116092607 -7983565 + MTD LTR MaLR 10 418 -1 2 1470 618 209 106 58 chr9 116092858 116093046 -7983126 - B3A SINE B2 0 198 2 2 1470 257 0 30 0 chr9 116093112 116093145 -7983027 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1470 643 264 14 0 chr9 116093236 116093384 -7982788 + B3A SINE B2 1 150 -48 2 1470 438 20 0 0 chr9 116093384 116093435 -7982737 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1470 403 206 17 136 chr9 116093496 116093614 -7982558 + MT2B LTR ERVL 161 264 -337 2 1470 914 111 44 15 chr9 116093508 116093645 -7982527 + B1_Mur4 SINE Alu 10 150 0 2 1470 782 245 141 46 chr9 116093883 116094187 -7981985 - ORR1D2 LTR MaLR -5 365 33 2 1470 618 202 17 0 chr9 116094433 116094606 -7981566 + CT-rich Low_complexity Low_complexity 3 178 0 2 1470 286 344 22 90 chr9 116094624 116094758 -7981414 - B1_Mm SINE Alu -22 125 1 2 1470 812 232 79 0 chr9 116094758 116094832 -7981340 - B4 SINE B4 -202 90 2 2 1470 999 282 92 54 chr9 116095446 116095795 -7980377 - MTE2b LTR MaLR 0 379 18 2 1470 331 319 88 9 chr9 116096066 116096180 -7979992 + LTR82B Low_complexity ERVL 616 738 -92 2 1470 282 286 137 67 chr9 116096859 116097114 -7979058 + B4A SINE B4 4 276 -16 2 1470 575 51 13 0 chr9 116097150 116097229 -7978943 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1470 3020 75 39 0 chr9 116097351 116097736 -7978436 - MTB LTR MaLR 0 400 1 2 1470 226 293 77 29 chr9 116098619 116098719 -7977453 - MIRb SINE MIR -164 104 8 2 1470 251 241 0 0 chr9 116099625 116099679 -7976493 - PB1D9 SINE Alu -66 54 1 2 1470 594 217 0 48 chr9 116100250 116100376 -7975796 + B1_Mur2 SINE Alu 10 129 -20 2 1470 530 98 12 0 chr9 116100376 116100458 -7975714 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 1470 227 122 39 39 chr9 116100650 116100701 -7975471 - MTD LTR MaLR -10 409 359 2 1470 871 300 36 59 chr9 116101182 116101267 -7974905 + ORR1E LTR MaLR 10 89 -270 2 1470 395 295 29 54 chr9 116101267 116101471 -7974701 - B3 SINE B2 -16 200 2 2 1470 871 300 36 59 chr9 116101471 116101722 -7974450 + ORR1E LTR MaLR 90 338 -21 2 1470 666 247 54 54 chr9 116101941 116102125 -7974047 - B3A SINE B2 -3 195 12 2 1470 248 307 85 16 chr9 116102462 116102591 -7973581 - LTR16A1 LTR ERVL -51 405 268 2 1470 573 15 0 0 chr9 116102776 116102842 -7973330 + (CAGGG)n Simple_repeat Simple_repeat 2 67 0 2 1470 342 334 152 88 chr9 116102847 116103092 -7973080 + MLT1G LTR MaLR 216 525 -70 2 1470 483 33 0 0 chr9 116103092 116103153 -7973019 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1470 253 333 152 89 chr9 116103153 116103212 -7972960 + MLT1G LTR MaLR 526 587 -8 2 1470 232 211 70 0 chr9 116103223 116103280 -7972892 - Tigger15a DNA TcMar -152 563 503 2 1470 847 269 75 68 chr9 116103928 116104207 -7971965 + B4 SINE B4 11 291 -1 2 1470 534 162 0 0 chr9 116104209 116104326 -7971846 + GA-rich Low_complexity Low_complexity 2 118 0 2 1470 645 302 57 107 chr9 116104665 116105050 -7971122 + MTE2a LTR MaLR 9 374 -5 2 1470 235 312 161 35 chr9 116105308 116105451 -7970721 - L2c LINE L2 -2 3385 3225 2 1470 1004 212 53 24 chr9 116105725 116105933 -7970239 + B3 SINE B2 3 216 0 2 1470 250 295 161 28 chr9 116105921 116106064 -7970108 - MER97c DNA MER1_type? -492 598 437 2 1470 230 302 84 9 chr9 116106217 116106324 -7969848 + ORR1C2 LTR MaLR 5 119 -265 2 1470 351 289 63 57 chr9 116106364 116106522 -7969650 + B4 SINE B4 52 210 -82 2 1470 292 282 21 29 chr9 116106506 116106608 -7969564 - ID_B1 SINE B4 -129 163 61 2 1470 714 43 0 0 chr9 116106616 116106710 -7969462 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 1470 414 100 0 0 chr9 116106913 116106973 -7969199 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1470 533 232 51 44 chr9 116107497 116107655 -7968517 + RSINE1 SINE B4 3 161 -4 2 1470 529 292 15 44 chr9 116108648 116108852 -7967320 + B3A SINE B2 1 198 0 2 1470 1225 48 0 0 chr9 116108918 116109064 -7967108 + B1_Mm SINE Alu 1 146 -1 2 1470 322 321 88 22 chr9 116109077 116109214 -7966958 - RSINE1 SINE B4 -18 147 2 2 1470 2741 69 82 0 chr9 116109557 116109935 -7966237 - RLTR10A LTR ERVK -2 409 1 2 1470 3340 63 16 5 chr9 116110009 116110452 -7965720 - MusHAL1 LINE L1 -1 2711 2264 2 1470 1262 48 0 0 chr9 116110459 116110606 -7965566 - B1_Mm SINE Alu 0 147 1 2 1470 4066 71 17 2 chr9 116110631 116111165 -7965007 - L1_Mus2 LINE L1 -1 6565 6024 2 1470 3497 85 0 15 chr9 116111165 116111347 -7964825 + L1_Mus2 LINE L1 5423 5604 -279 2 1470 3637 24 34 86 chr9 116111347 116111848 -7964324 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1470 3497 43 7 16 chr9 116111848 116112252 -7963920 + L1_Mus2 LINE L1 5605 6005 -561 2 1470 5820 51 9 3 chr9 116112250 116113020 -7963152 - MusHAL1 LINE L1 -434 2278 1504 2 1470 519 208 61 48 chr9 116113034 116113187 -7962985 - ID_B1 SINE B4 -38 254 90 2 1470 245 286 27 41 chr9 116113403 116113476 -7962696 - ID4 SINE ID -10 73 2 2 1470 23 33 0 0 chr9 116113476 116113506 -7962666 + AT_rich Low_complexity Low_complexity 1 30 0 2 1470 219 69 0 0 chr9 116113775 116113804 -7962368 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1470 444 195 81 0 chr9 116113853 116113940 -7962232 - RSINE1 SINE B4 -38 127 34 2 1470 696 225 8 0 chr9 116114422 116114551 -7961621 - ID_B1 SINE B4 -8 216 87 2 1470 279 298 106 0 chr9 116114602 116114706 -7961466 + MIR SINE MIR 17 131 -131 2 1470 601 343 147 47 chr9 116114933 116115362 -7960810 - MLT1H1 LTR MaLR -78 477 6 2 1470 387 0 0 0 chr9 116115721 116115764 -7960408 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1470 339 179 13 13 chr9 116116363 116116442 -7959730 + MLT1L LTR MaLR 1 79 -531 2 1470 502 259 18 0 chr9 116116625 116116737 -7959435 + B3A SINE B2 9 122 -76 2 1470 598 117 31 15 chr9 116118448 116118578 -7957594 + (TCTA)n Simple_repeat Simple_repeat 2 133 0 2 1470 302 279 92 46 chr9 116118581 116118754 -7957418 - L1MEd LINE L1 -5018 1101 921 2 1470 448 233 24 6 chr9 116119532 116119640 -7956532 + PB1D10 SINE Alu 2 116 -11 2 1470 1862 159 134 19 chr9 116119971 116120343 -7955829 + MTD LTR MaLR 5 419 0 2 1470 458 305 39 0 chr9 116120675 116120803 -7955369 + MER58B DNA MER1_type 173 305 -36 2 1470 627 240 13 25 chr9 116121023 116121181 -7954991 + RSINE1 SINE B4 3 158 -7 2 1470 674 296 105 44 chr9 116121264 116121607 -7954565 - RMER5 LTR ERV1 -138 396 33 2 1470 333 82 0 0 chr9 116122242 116122291 -7953881 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1470 1087 260 137 21 chr9 116122790 116122921 -7953251 - Lx8 LINE L1 -2 7471 7326 2 1470 252 86 0 0 chr9 116122921 116122956 -7953216 + (CAAT)n Simple_repeat Simple_repeat 3 37 0 2 1470 1087 260 137 21 chr9 116122956 116123256 -7952916 - Lx8 LINE L1 -148 7325 6990 2 1470 634 262 85 30 chr9 116123377 116123542 -7952630 + B3 SINE B2 30 203 -13 2 1470 486 261 47 53 chr9 116123720 116123910 -7952262 - RLTR23 LTR ERV1 0 430 242 2 1470 225 0 0 0 chr9 116124072 116124097 -7952075 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2 1470 1004 70 42 3 chr9 116124367 116124703 -7951469 + (TCTA)n Simple_repeat Simple_repeat 1 349 0 2 1470 438 329 114 9 chr9 116124835 116125062 -7951110 - B4A SINE B4 -39 253 3 3 1470 504 333 12 48 chr9 116125177 116125344 -7950828 + RSINE1 SINE B4 3 163 -2 3 1470 336 48 0 0 chr9 116125377 116125419 -7950753 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1470 591 313 0 7 chr9 116125421 116125569 -7950603 - B3A SINE B2 -51 147 1 3 1470 184 300 74 12 chr9 116125963 116126044 -7950128 - MIRc SINE MIR -106 162 77 3 1470 1630 74 114 5 chr9 116126544 116126812 -7949360 + ORR1A2 LTR MaLR 60 346 0 3 1470 825 245 54 15 chr9 116127029 116127232 -7948940 + B3 SINE B2 2 212 -4 3 1470 706 250 26 13 chr9 116127282 116127436 -7948736 + B3A SINE B2 36 191 -7 3 1470 366 289 14 88 chr9 116127507 116127528 -7948644 + ID_B1 SINE B4 86 222 -2 3 1470 389 295 31 39 chr9 116127528 116127655 -7948517 + B1F SINE Alu 22 147 -2 3 1470 337 265 22 63 chr9 116127761 116127874 -7948298 - PB1D7 SINE Alu 0 120 1 3 1470 234 0 0 0 chr9 116128340 116128366 -7947806 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1470 242 138 0 17 chr9 116128366 116128425 -7947747 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1470 549 273 193 0 chr9 116128428 116128666 -7947506 - B4A SINE B4 -8 284 1 3 1470 352 229 535 82 chr9 116129253 116129473 -7946699 - MTE2b LTR MaLR 0 379 52 3 183 3017 156 16 32 chr9 116129473 116130043 -7946129 + RLTR31_Mm LTR ERVK 1 561 0 3 1471 269 270 36 99 chr9 116130043 116130100 -7946072 - MTE2b LTR MaLR -328 51 1 3 1471 647 293 0 51 chr9 116130935 116131093 -7945079 - RSINE1 SINE B4 0 165 16 3 1471 207 0 0 0 chr9 116131580 116131603 -7944569 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1471 423 0 0 0 chr9 116131648 116131695 -7944477 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1471 233 320 15 109 chr9 116131944 116132081 -7944091 + PB1 SINE Alu 4 127 0 3 1471 252 0 0 0 chr9 116132093 116132121 -7944051 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1471 1365 73 50 6 chr9 116132247 116132427 -7943745 - B2_Mm2 SINE B2 -7 188 1 3 1471 273 29 0 0 chr9 116132942 116132976 -7943196 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1471 728 102 0 14 chr9 116132976 116133115 -7943057 + (CAGAGA)n Simple_repeat Simple_repeat 2 138 0 3 1471 823 274 142 13 chr9 116133119 116133345 -7942827 - B4 SINE B4 -23 269 15 3 1471 470 276 38 30 chr9 116134069 116134200 -7941972 - B3A SINE B2 -66 132 1 3 1471 192 291 0 0 chr9 116134320 116134399 -7941773 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1471 415 256 82 38 chr9 116134450 116134608 -7941564 - B4A SINE B4 -117 175 11 3 1471 586 337 35 35 chr9 116135228 116135489 -7940683 + B4A SINE B4 2 262 -30 3 1471 232 303 175 13 chr9 116135787 116135941 -7940231 + L1M1 LINE L1 5713 5891 -421 3 1471 739 262 33 37 chr9 116136572 116136786 -7939386 + B4 SINE B4 1 213 -79 3 1471 289 98 66 0 chr9 116137331 116137392 -7938780 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 3 1471 213 231 0 0 chr9 116137548 116137587 -7938585 + T-rich Low_complexity Low_complexity 3 41 0 3 1471 391 348 31 12 chr9 116138164 116138324 -7937848 + B4 SINE B4 1 163 -129 3 1471 482 207 56 28 chr9 116139112 116139256 -7936916 + RSINE1 SINE B4 3 150 -15 3 1471 294 125 0 0 chr9 116139262 116139310 -7936862 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1471 370 198 101 30 chr9 116139434 116139533 -7936639 - PB1D10 SINE Alu 0 117 12 3 1471 354 47 116 0 chr9 116140133 116140219 -7935953 + (CAGAGA)n Simple_repeat Simple_repeat 5 100 0 3 1471 251 246 0 0 chr9 116140238 116140307 -7935865 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 3 1471 1487 266 26 35 chr9 116141584 116141961 -7934211 - MTE2a LTR MaLR -5 374 1 3 1471 1237 167 37 5 chr9 116142040 116142257 -7933915 + URR1B DNA MER1_type 1 224 -1 3 1471 187 250 65 97 chr9 116142732 116142856 -7933316 + MIR SINE MIR 28 147 -61 3 1471 622 307 124 59 chr9 116142859 116143132 -7933040 + B4 SINE B4 2 292 0 3 1471 288 77 0 0 chr9 116143138 116143177 -7932995 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1471 559 208 11 27 chr9 116143838 116144021 -7932151 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1471 1525 176 40 135 chr9 116144542 116144943 -7931229 - ORR1D1 LTR MaLR -11 363 1 3 1471 237 157 52 61 chr9 116144959 116145074 -7931098 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 3 1471 3101 136 18 26 chr9 116145088 116145593 -7930579 + RLTR20C LTR ERVK 1 501 -33 3 1471 331 228 33 33 chr9 116145625 116145775 -7930397 + (TCTA)n Simple_repeat Simple_repeat 1 150 0 3 1471 346 339 66 36 chr9 116145839 116146035 -7930137 - MLT2C1 LTR ERVL -161 236 35 3 1471 802 346 32 72 chr9 116146044 116146514 -7929658 + MT2A LTR ERVL 12 462 -71 3 1471 853 235 34 24 chr9 116146641 116146846 -7929326 - B3 SINE B2 -9 207 1 3 1471 420 222 0 0 chr9 116146887 116146959 -7929213 - B1F SINE Alu -65 84 13 3 1471 188 245 35 86 chr9 116147444 116147502 -7928670 - L2c LINE L2 -60 3327 3273 3 1471 503 200 8 57 chr9 116147942 116148064 -7928108 - PB1D10 SINE Alu -1 116 1 3 1471 1185 82 0 0 chr9 116148103 116148249 -7927923 - B1_Mus1 SINE Alu 0 148 3 3 1471 186 0 88 0 chr9 116148629 116148663 -7927509 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1471 449 271 6 89 chr9 116148668 116148692 -7927480 + ID_B1 SINE B4 80 224 0 3 1471 736 197 8 15 chr9 116148692 116148826 -7927346 + B1_Mur2 SINE Alu 15 147 -2 3 1471 257 167 112 56 chr9 116149529 116149618 -7926554 - Lx7 LINE L1 0 7696 7603 3 1471 250 26 51 0 chr9 116149619 116149658 -7926514 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 1471 225 0 0 0 chr9 116149711 116149736 -7926436 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 1471 225 258 113 38 chr9 116149736 116149869 -7926303 - B1F2 SINE Alu 0 149 7 3 1471 468 265 94 25 chr9 116149779 116149938 -7926234 - ID_B1 SINE B4 -48 176 7 3 1471 492 179 0 0 chr9 116150185 116150297 -7925875 + (CA)n Simple_repeat Simple_repeat 2 113 0 3 1471 243 79 0 0 chr9 116150296 116150334 -7925838 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1471 303 28 0 0 chr9 116150334 116150370 -7925802 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1471 372 143 47 16 chr9 116150989 116151053 -7925119 - ID_B1 SINE B4 -55 169 104 3 1471 1641 195 95 28 chr9 116151610 116152000 -7924172 + MTD LTR MaLR 4 419 0 3 1471 849 267 29 19 chr9 116152113 116152323 -7923849 - MTD LTR MaLR -201 218 7 3 1471 346 308 9 55 chr9 116152392 116152502 -7923670 - RSINE1 SINE B4 -59 106 2 3 1471 242 421 9 0 chr9 116153788 116153895 -7922277 + MTEa LTR MaLR 15 122 -257 3 1471 472 335 24 12 chr9 116153971 116154140 -7922032 + MT2A LTR ERVL 248 418 -115 3 1471 608 316 32 0 chr9 116154229 116154384 -7921788 + RSINE1 SINE B4 6 165 0 3 1471 180 317 121 32 chr9 116154386 116154510 -7921662 - MIR3 SINE MIR -43 165 31 3 1471 425 219 146 15 chr9 116154646 116154776 -7921396 + B3A SINE B2 1 147 -51 3 1471 276 30 0 0 chr9 116154776 116154809 -7921363 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1471 431 209 33 98 chr9 116154883 116155005 -7921167 + MTEb LTR MaLR 1 114 -265 3 1471 1057 124 41 0 chr9 116155170 116155339 -7920833 - ORR1B2 LTR MaLR -3 364 189 3 1471 946 266 57 18 chr9 116155329 116155608 -7920564 + MTEb LTR MaLR 90 379 0 3 1471 1608 142 205 0 chr9 116156180 116156482 -7919690 - ORR1B2 LTR MaLR -3 364 1 3 1471 532 296 105 26 chr9 116156669 116156860 -7919312 + B3 SINE B2 1 206 -10 3 1471 673 283 29 11 chr9 116156870 116157045 -7919127 - ID_B1 SINE B4 -46 178 1 3 1471 266 320 63 15 chr9 116157076 116157247 -7918925 - MIR SINE MIR -61 201 29 3 1471 389 335 66 20 chr9 116157472 116157624 -7918548 + ZP3AR Satellite Satellite 37 195 -17 3 1471 652 286 37 23 chr9 116157625 116157843 -7918329 + ID_B1 SINE B4 1 221 -3 3 1471 214 250 0 0 chr9 116157844 116157896 -7918276 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 3 1471 198 0 0 0 chr9 116158537 116158559 -7917613 + (CACG)n Simple_repeat Simple_repeat 2 23 0 3 1471 234 81 0 0 chr9 116159245 116159282 -7916890 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1471 285 254 15 15 chr9 116159298 116159366 -7916806 - B4A SINE B4 0 292 225 3 1471 534 272 0 46 chr9 116159398 116159529 -7916643 - RSINE1 SINE B4 -29 136 12 3 1471 1547 179 54 68 chr9 116159643 116159819 -7916353 - ORR1C2 LTR MaLR -21 363 185 3 1471 347 41 20 0 chr9 116159819 116159868 -7916304 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 3 1471 1547 179 54 68 chr9 116159868 116160044 -7916128 - ORR1C2 LTR MaLR -200 184 17 3 1471 849 176 7 13 chr9 116160052 116160202 -7915970 - B1_Mur4 SINE Alu 0 150 2 3 1471 6460 132 40 24 chr9 116160221 116161850 -7914322 - L1_Mus2 LINE L1 -1 6565 4900 3 1471 689 284 92 9 chr9 116161882 116162099 -7914073 - B4A SINE B4 -55 237 3 3 1471 269 205 0 8 chr9 116162115 116162174 -7913998 - B1F1 SINE Alu -33 116 61 3 1471 809 255 28 19 chr9 116163542 116163758 -7912414 - ID_B1 SINE B4 0 224 7 3 1471 566 260 93 20 chr9 116163870 116164074 -7912098 - ID_B1 SINE B4 -4 220 2 3 1471 488 193 9 46 chr9 116164108 116164229 -7911943 + B1F SINE Alu 1 124 -3 3 1471 291 250 5 213 chr9 116164667 116164700 -7911472 - B1F SINE Alu 0 149 128 3 1471 270 0 0 0 chr9 116164700 116164730 -7911442 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1471 291 250 5 213 chr9 116164730 116164884 -7911288 - B1F SINE Alu -22 127 1 3 1471 369 284 20 182 chr9 116164884 116164935 -7911237 - ID SINE ID -173 51 33 4 1471 988 209 5 20 chr9 116165325 116165525 -7910647 + B3A SINE B2 2 198 0 4 1471 489 276 0 33 chr9 116165579 116165699 -7910473 + RSINE1 SINE B4 2 117 -48 4 1471 1201 174 293 6 chr9 116166354 116166678 -7909494 - MTC LTR MaLR 0 421 5 4 1471 938 275 78 124 chr9 116166806 116167242 -7908930 - MTD LTR MaLR -1 418 3 4 1471 410 316 11 76 chr9 116167476 116167661 -7908511 - B4 SINE B4 -2 290 118 4 1471 327 25 0 0 chr9 116167740 116167780 -7908392 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1471 456 67 0 0 chr9 116167926 116167986 -7908186 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1471 255 254 0 17 chr9 116168051 116168111 -7908061 + CT-rich Low_complexity Low_complexity 1 59 0 4 1471 347 267 0 11 chr9 116168112 116168203 -7907969 - ID_B1 SINE B4 0 224 135 4 1471 523 251 0 119 chr9 116168663 116168848 -7907324 - RSINE1 SINE B4 0 165 3 4 1471 390 145 14 0 chr9 116169182 116169251 -7906921 - B1_Mur3 SINE Alu 0 149 80 4 1471 249 341 0 68 chr9 116169259 116169347 -7906825 - RSINE1 SINE B4 0 165 84 4 1471 354 275 66 8 chr9 116169434 116169555 -7906617 - B1F2 SINE Alu -21 128 1 4 1471 604 286 7 7 chr9 116169567 116169715 -7906457 - ID_B1 SINE B4 0 224 77 4 1471 382 358 0 9 chr9 116169994 116170104 -7906068 - B4 SINE B4 0 292 184 4 1471 1611 195 61 6 chr9 116170107 116170452 -7905720 + MTD LTR MaLR 41 404 -15 4 1471 349 350 0 41 chr9 116170482 116170628 -7905544 - ID_B1 SINE B4 -82 142 3 4 1471 797 281 28 101 chr9 116170701 116170902 -7905270 + MTD LTR MaLR 10 202 -217 4 1471 550 299 38 0 chr9 116170902 116171059 -7905113 + RSINE1 SINE B4 3 165 0 4 1471 797 281 28 101 chr9 116171059 116171284 -7904888 + MTD LTR MaLR 203 405 -14 4 1471 224 246 0 34 chr9 116171517 116171576 -7904596 + C-rich Low_complexity Low_complexity 1 57 0 4 1471 201 147 38 38 chr9 116171727 116171789 -7904383 - MIRc SINE MIR -55 153 92 4 1471 282 95 0 0 chr9 116171888 116171930 -7904242 + (CAG)n Simple_repeat Simple_repeat 1 42 0 4 1471 338 235 91 16 chr9 116171946 116172067 -7904105 + ID_B1 SINE B4 79 208 -16 4 1471 331 210 10 10 chr9 116172069 116172170 -7904002 + GA-rich Low_complexity Low_complexity 1 101 0 4 1471 186 133 0 0 chr9 116172465 116172495 -7903677 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4 1471 438 214 19 75 chr9 116172495 116172601 -7903571 - B1_Mur2 SINE Alu -6 143 44 4 1471 509 279 0 23 chr9 116172600 116172732 -7903440 - B1F SINE Alu -16 133 5 4 1471 802 272 86 24 chr9 116173933 116174223 -7901949 + RMER5 LTR ERV1 33 340 -194 4 1471 698 191 6 95 chr9 116174238 116174417 -7901755 + RMER6B LTR ERVK 294 456 -5 4 1471 239 31 0 30 chr9 116174797 116174830 -7901342 + (TCC)n Simple_repeat Simple_repeat 1 32 0 4 1471 653 173 0 43 chr9 116174834 116175021 -7901151 + CT-rich Low_complexity Low_complexity 1 179 0 4 1471 413 313 104 20 chr9 116175634 116175836 -7900336 + RMER15 LTR ERVL 343 561 -14 4 1471 1371 222 117 11 chr9 116176877 116177253 -7898919 + MTD LTR MaLR 4 405 -14 4 1471 676 294 90 0 chr9 116177311 116177566 -7898606 - ORR1E LTR MaLR -81 298 1 4 1471 354 281 107 58 chr9 116177930 116178051 -7898121 - ID_B1 SINE B4 -4 220 94 4 1471 461 245 172 21 chr9 116178207 116178399 -7897773 + ID_B1 SINE B4 1 221 -3 4 1471 423 165 39 0 chr9 116178399 116178502 -7897670 + GA-rich Low_complexity Low_complexity 1 107 0 4 1471 497 285 23 46 chr9 116178796 116178926 -7897246 + B3A SINE B2 14 143 -55 4 1471 1911 163 108 3 chr9 116178926 116179270 -7896902 - RLTR14 LTR ERV1 0 382 3 4 1471 497 285 23 46 chr9 116179270 116179312 -7896860 + B3A SINE B2 144 182 -16 4 1471 462 310 60 65 chr9 116180221 116180421 -7895751 + RMER13A LTR ERVK 662 860 0 4 1471 544 309 97 13 chr9 116180654 116180880 -7895292 - B4A SINE B4 -6 286 42 4 1471 23 33 0 0 chr9 116181047 116181077 -7895095 + AT_rich Low_complexity Low_complexity 1 30 0 4 1471 731 246 56 80 chr9 116181569 116181856 -7894316 - MT2A LTR ERVL -7 526 247 4 1471 495 87 0 0 chr9 116181887 116181956 -7894216 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 1471 373 298 106 8 chr9 116182494 116182626 -7893546 + B4 SINE B4 148 292 0 4 1471 276 155 0 0 chr9 116182659 116182730 -7893442 + (TCTCTG)n Simple_repeat Simple_repeat 4 74 0 4 1471 216 0 0 0 chr9 116182730 116182754 -7893418 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1471 465 19 0 0 chr9 116182754 116182807 -7893365 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1471 323 200 29 0 chr9 116183068 116183138 -7893034 - ID SINE ID -152 72 1 4 1471 365 267 96 7 chr9 116183239 116183375 -7892797 - B1F SINE Alu 0 149 2 4 1471 906 81 0 0 chr9 116183457 116183581 -7892591 + (TCTCCC)n Simple_repeat Simple_repeat 3 126 0 4 1471 694 162 30 12 chr9 116184674 116185017 -7891155 + (CA)n Simple_repeat Simple_repeat 1 349 0 4 1471 548 234 14 14 chr9 116185555 116185694 -7890478 + B1F1 SINE Alu 10 148 -1 4 1471 182 37 37 0 chr9 116185720 116185747 -7890425 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1471 183 222 69 69 chr9 116185893 116185980 -7890192 - MIRb SINE MIR -43 225 139 4 1471 186 87 43 21 chr9 116186564 116186611 -7889561 + A-rich Low_complexity Low_complexity 3 50 0 4 1471 654 272 141 0 chr9 116187436 116187627 -7888545 + ID_B1 SINE B4 3 220 -4 4 1471 990 100 129 18 chr9 116187685 116187848 -7888324 - B2_Mm2 SINE B2 -14 181 1 4 1471 530 282 0 0 chr9 116189709 116189833 -7886339 + ID_B1 SINE B4 93 216 -8 4 1471 1191 29 0 0 chr9 116189877 116190014 -7886158 - B1_Mus1 SINE Alu -11 137 1 4 1471 733 267 62 5 chr9 116190469 116190680 -7885492 - ID_B1 SINE B4 -1 223 1 4 1471 225 341 103 77 chr9 116191115 116191388 -7884784 + B4 SINE B4 2 281 -11 4 1471 239 0 0 31 chr9 116191416 116191448 -7884724 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1471 560 244 268 0 chr9 116191546 116191714 -7884458 - B3 SINE B2 -3 213 1 4 1471 536 306 71 0 chr9 116192120 116192303 -7883869 + B3 SINE B2 7 202 -14 4 1471 3008 78 21 17 chr9 116192747 116193166 -7883006 - BGLII LTR ERVK 0 421 1 4 1471 608 119 17 17 chr9 116193575 116193695 -7882477 + C-rich Low_complexity Low_complexity 1 120 0 4 1471 333 0 0 0 chr9 116193722 116193759 -7882413 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1471 484 297 65 0 chr9 116193772 116193910 -7882262 - B4 SINE B4 -18 274 128 4 1471 217 197 13 13 chr9 116194516 116194593 -7881579 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1471 279 0 0 0 chr9 116194695 116194726 -7881446 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1471 222 333 14 0 chr9 116194787 116194856 -7881316 - ID_B1 SINE B4 -64 160 91 4 1471 292 314 30 99 chr9 116196138 116196269 -7879903 + B4 SINE B4 24 145 -147 4 1471 413 245 88 26 chr9 116196269 116196486 -7879686 + MTD LTR MaLR 148 404 -15 4 1471 1717 181 39 68 chr9 116196585 116196766 -7879406 + ORR1C1 LTR MaLR 5 166 -212 4 1471 324 0 0 0 chr9 116196766 116196802 -7879370 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1471 1717 181 39 68 chr9 116196802 116197005 -7879167 + ORR1C1 LTR MaLR 167 378 0 4 1471 223 309 0 12 chr9 116197171 116197253 -7878919 - B1F2 SINE Alu -58 91 11 4 1471 1516 201 74 44 chr9 116197356 116197763 -7878409 + MTD LTR MaLR 1 419 0 4 1471 710 274 0 97 chr9 116197831 116198057 -7878115 + B3 SINE B2 5 208 -8 4 1471 259 141 0 96 chr9 116198492 116198566 -7877606 + T-rich Low_complexity Low_complexity 21 89 0 4 1471 1208 48 7 0 chr9 116198566 116198712 -7877460 - B1_Mus2 SINE Alu 0 147 1 4 1471 259 141 0 96 chr9 116198712 116198731 -7877441 + T-rich Low_complexity Low_complexity 5 20 0 4 1471 339 260 10 20 chr9 116198736 116198838 -7877334 - PB1D10 SINE Alu -7 110 10 4 1471 23 33 0 0 chr9 116199221 116199251 -7876921 + AT_rich Low_complexity Low_complexity 1 30 0 4 1471 459 155 0 0 chr9 116199282 116199366 -7876806 + GA-rich Low_complexity Low_complexity 2 85 0 4 1471 489 213 17 69 chr9 116199397 116199513 -7876659 - B3A SINE B2 -88 110 1 4 1471 704 197 0 11 chr9 116199639 116199819 -7876353 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1471 244 235 0 0 chr9 116199819 116199870 -7876302 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 4 1471 490 291 221 29 chr9 116199870 116199944 -7876228 - B4 SINE B4 0 292 225 4 1471 306 20 59 0 chr9 116199944 116199995 -7876177 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1471 490 291 221 29 chr9 116199995 116200164 -7876008 - B4 SINE B4 -68 224 4 4 1471 1059 270 35 18 chr9 116200996 116201335 -7874837 - ORR1E LTR MaLR -8 351 7 4 1471 444 77 0 0 chr9 116202236 116202301 -7873871 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1471 234 0 0 0 chr9 116202982 116203008 -7873164 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1471 751 278 8 39 chr9 116203023 116203048 -7873124 - B4A SINE B4 -44 248 224 4 1471 879 233 28 23 chr9 116203048 116203263 -7872909 - B3 SINE B2 0 216 1 4 1471 751 278 8 39 chr9 116203263 116203492 -7872680 - B4A SINE B4 -69 223 3 4 1471 210 71 0 0 chr9 116203636 116203664 -7872508 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1471 239 338 90 27 chr9 116203910 116204132 -7872040 + L1MEg LINE L1 232 467 -5617 4 1471 1227 41 0 7 chr9 116204414 116204561 -7871611 + B1_Mm SINE Alu 2 147 0 4 1471 234 290 263 19 chr9 116205094 116205410 -7870762 + L1M3 LINE L1 4971 5363 -777 4 1471 207 0 0 0 chr9 116206158 116206181 -7869991 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1471 192 97 0 0 chr9 116206483 116206514 -7869658 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1471 1067 268 78 25 chr9 116206542 116206902 -7869270 + MTE2b LTR MaLR 1 379 0 5 1471 383 352 103 8 chr9 116207007 116207259 -7868913 - MLT1B LTR MaLR 0 390 115 5 1471 854 273 81 24 chr9 116207290 116207538 -7868634 - MTEa LTR MaLR -4 375 114 5 1471 283 167 0 0 chr9 116207535 116207589 -7868583 + ORR1C1 LTR MaLR 123 176 -202 5 1471 316 271 104 0 chr9 116207604 116207700 -7868472 - MTEa LTR MaLR -273 106 1 5 1471 1070 296 57 22 chr9 116208561 116208927 -7867245 + MTEa LTR MaLR 1 379 0 5 1471 1501 176 24 14 chr9 116208983 116209345 -7866827 + ORR1B2 LTR MaLR 19 378 0 5 1471 420 20 0 0 chr9 116209484 116209533 -7866639 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1471 207 114 0 0 chr9 116209953 116209988 -7866184 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1471 711 173 0 0 chr9 116209998 116210166 -7866006 + (CA)n Simple_repeat Simple_repeat 1 168 0 5 1471 387 217 0 27 chr9 116210206 116210391 -7865781 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1471 390 224 0 0 chr9 116210431 116210578 -7865594 + (CA)n Simple_repeat Simple_repeat 1 147 0 5 1471 395 331 15 15 chr9 116210598 116210733 -7865439 + ID_B1 SINE B4 5 139 -85 5 1471 180 203 14 42 chr9 116210755 116210827 -7865345 + CT-rich Low_complexity Low_complexity 5 74 0 5 1471 368 206 20 40 chr9 116210831 116210944 -7865228 - B1F SINE Alu -3 146 35 5 1471 515 269 111 78 chr9 116211767 116212037 -7864135 + B4 SINE B4 2 280 -12 5 1471 252 111 0 0 chr9 116212245 116212290 -7863882 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 5 1471 249 33 0 0 chr9 116212329 116212359 -7863813 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 5 1471 731 248 103 117 chr9 116212456 116212825 -7863347 + MTEa LTR MaLR 16 379 0 5 1471 603 144 0 0 chr9 116212922 116213033 -7863139 + (TC)n Simple_repeat Simple_repeat 2 112 0 5 1471 296 223 11 49 chr9 116213524 116213708 -7862464 + (CATA)n Simple_repeat Simple_repeat 4 180 0 5 1471 303 85 0 0 chr9 116213961 116214008 -7862164 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 5 1471 183 100 0 0 chr9 116214225 116214255 -7861917 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1471 32 0 0 0 chr9 116214548 116214580 -7861592 + AT_rich Low_complexity Low_complexity 1 32 0 5 1471 236 315 62 16 chr9 116215124 116215253 -7860919 - MamGypLTR2b LTR Gypsy 0 922 788 5 1471 4188 59 76 2 chr9 116215514 116216039 -7860133 + LTRIS2 LTR ERV1 1 564 0 5 1471 860 283 135 3 chr9 116216170 116216482 -7859690 - ORR1E LTR MaLR -2 357 5 5 1471 2558 165 0 0 chr9 116217197 116217591 -7858581 + ORR1B1 LTR MaLR 1 394 0 5 1471 602 306 0 7 chr9 116218097 116218245 -7857927 + RSINE1 SINE B4 1 147 -18 5 1471 669 58 0 0 chr9 116219672 116219758 -7856414 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 1471 180 77 0 0 chr9 116220377 116220403 -7855769 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1471 213 121 0 0 chr9 116220401 116220434 -7855738 + (CCA)n Simple_repeat Simple_repeat 3 35 0 5 1471 264 77 0 0 chr9 116221035 116221074 -7855098 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1471 432 244 49 0 chr9 116221973 116222096 -7854076 + MTD LTR MaLR 12 140 -279 5 1471 825 260 61 15 chr9 116222096 116222358 -7853814 + B4A SINE B4 1 274 -18 5 1471 449 304 37 6 chr9 116222513 116222675 -7853497 - MER20 DNA MER1_type -21 198 32 5 1471 369 0 0 0 chr9 116224423 116224464 -7851708 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1471 684 0 0 0 chr9 116224464 116224540 -7851632 + (GAA)n Simple_repeat Simple_repeat 3 78 0 5 1471 229 283 233 0 chr9 116224543 116224663 -7851509 + L1MCa LINE L1 1476 1623 -4885 5 1471 2473 162 81 38 chr9 116224727 116224879 -7851293 - RLTR11A LTR ERVK 0 528 382 5 1471 1013 104 0 0 chr9 116224879 116225013 -7851159 - B1_Mus1 SINE Alu -14 134 1 5 1471 2473 162 81 38 chr9 116225013 116225366 -7850806 - RLTR11A LTR ERVK -147 381 2 5 1471 316 252 20 29 chr9 116225425 116225527 -7850645 + L1MCa LINE L1 1795 1895 -4613 5 1471 437 0 19 0 chr9 116225599 116225652 -7850520 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1471 500 254 59 7 chr9 116225658 116225793 -7850379 + ID_B1 SINE B4 83 224 0 5 1471 1132 218 75 25 chr9 116226130 116226412 -7849760 + RMER20B LTR ERVK 301 596 -31 5 1471 524 288 46 16 chr9 116226412 116226607 -7849565 - ID_B1 SINE B4 0 292 85 5 1471 695 254 111 5 chr9 116227117 116227307 -7848865 - B3 SINE B2 -6 210 1 5 1471 517 0 44 0 chr9 116227343 116227411 -7848761 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 5 1471 487 237 6 126 chr9 116227418 116227560 -7848612 + B3 SINE B2 74 200 -16 5 1471 236 30 30 0 chr9 116227560 116227593 -7848579 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 5 1471 487 237 6 126 chr9 116227593 116227609 -7848563 + B3 SINE B2 201 213 -3 5 1471 320 283 2 4 chr9 116227663 116227753 -7848419 - B3A SINE B2 -44 172 84 5 1471 636 291 0 78 chr9 116228152 116228357 -7847815 + B3A SINE B2 1 189 -9 5 1471 493 273 58 13 chr9 116228383 116228539 -7847633 + B3 SINE B2 48 210 -6 5 1471 587 311 150 47 chr9 116229302 116229555 -7846617 + B4A SINE B4 3 281 -11 5 1471 225 347 0 13 chr9 116229570 116229646 -7846526 + ID4 SINE ID 9 83 0 5 1471 543 256 48 44 chr9 116231144 116231393 -7844779 + L1MA5 LINE L1 5617 5866 -434 5 1471 1765 215 32 22 chr9 116231636 116232046 -7844126 + MTD LTR MaLR 1 405 -14 5 1471 770 230 16 55 chr9 116232059 116232442 -7843730 + BGLII_B LTR ERVK 10 439 -2 5 1471 501 296 94 88 chr9 116232874 116233192 -7842980 - RLTR26 LTR ERVK -226 416 97 5 1471 214 211 0 0 chr9 116233310 116233348 -7842824 + B1F SINE Alu 93 130 -19 5 1471 787 248 311 28 chr9 116234860 116235154 -7841018 - Lx8 LINE L1 -384 7089 6713 5 1471 385 321 65 7 chr9 116235176 116235314 -7840858 - B1F1 SINE Alu -1 148 3 5 1471 208 167 0 23 chr9 116235369 116235412 -7840760 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 5 1471 378 0 0 0 chr9 116235542 116235584 -7840588 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1471 2874 104 7 49 chr9 116236019 116236464 -7839708 - RLTR23 LTR ERV1 -1 429 4 5 1471 226 389 31 52 chr9 116236593 116236883 -7839289 - MLT2F LTR ERVL -196 467 184 5 1471 623 278 59 25 chr9 116236907 116237110 -7839062 + ID_B1 SINE B4 14 223 -1 5 1471 252 0 0 0 chr9 116237851 116237879 -7838293 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1471 649 220 31 92 chr9 116237982 116238177 -7837995 - B3A SINE B2 -14 184 2 5 1471 261 229 24 6 chr9 116238753 116238830 -7837342 + B3 SINE B2 60 139 -59 5 1471 719 253 101 0 chr9 116241605 116241783 -7834389 - ID_B1 SINE B4 -27 197 2 5 1471 901 235 57 87 chr9 116242212 116242290 -7833882 - B4 SINE B4 0 292 219 5 1471 330 26 0 0 chr9 116242290 116242329 -7833843 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1471 901 235 57 87 chr9 116242329 116242548 -7833624 - B4 SINE B4 -74 218 5 5 1471 649 228 97 32 chr9 116242815 116243001 -7833171 - B3A SINE B2 0 198 1 5 1471 317 46 59 44 chr9 116243900 116243968 -7832204 + (TCTCTG)n Simple_repeat Simple_repeat 3 71 0 5 1471 352 227 22 11 chr9 116244152 116244241 -7831931 + B4 SINE B4 4 93 -199 5 1471 353 298 114 76 chr9 116244267 116244503 -7831669 + B4 SINE B4 26 270 -22 5 1471 405 0 0 0 chr9 116244518 116244563 -7831609 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1471 352 303 43 87 chr9 116246181 116246412 -7829760 + Lx8 LINE L1 7252 7472 -1 5 1471 1050 247 50 84 chr9 116247884 116248242 -7827930 + MTE2a LTR MaLR 6 351 -28 5 1471 261 226 33 87 chr9 116248639 116248731 -7827441 - B1F SINE Alu -6 143 57 5 1471 954 282 82 14 chr9 116249153 116249505 -7826667 - MTEa LTR MaLR -3 376 1 5 1471 505 250 10 0 chr9 116249549 116249649 -7826523 + PB1D10 SINE Alu 4 104 -13 5 1471 237 33 0 0 chr9 116249652 116249682 -7826490 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1471 801 263 33 19 chr9 116249685 116249898 -7826274 + B3 SINE B2 1 216 0 5 1471 348 289 175 13 chr9 116250171 116250325 -7825847 + B3A SINE B2 2 180 -18 5 1471 349 203 233 35 chr9 116250712 116250853 -7825319 + B3A SINE B2 5 172 -44 5 1471 342 0 0 0 chr9 116250854 116250892 -7825280 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1471 901 209 91 0 chr9 116250916 116251103 -7825069 - B3 SINE B2 -11 205 2 5 1471 46 19 0 0 chr9 116252181 116252234 -7823938 + AT_rich Low_complexity Low_complexity 1 53 0 5 1471 1281 93 0 0 chr9 116252740 116253077 -7823095 + (TG)n Simple_repeat Simple_repeat 1 337 0 5 1471 779 295 29 20 chr9 116253094 116253340 -7822832 - B4A SINE B4 -43 249 2 5 1471 30 27 0 0 chr9 116253720 116253757 -7822415 + AT_rich Low_complexity Low_complexity 1 37 0 5 1471 345 136 0 0 chr9 116253760 116253826 -7822346 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1471 545 294 24 24 chr9 116253827 116253991 -7822181 - RSINE1 SINE B4 0 165 2 5 1471 698 277 13 58 chr9 116254581 116254807 -7821365 + B3 SINE B2 1 216 0 5 1471 2564 87 19 22 chr9 116256813 116257179 -7818993 - L1_Mus2 LINE L1 -3 6563 6199 5 1471 218 298 61 41 chr9 116257335 116257433 -7818739 + L2 LINE L2 104 203 -3216 5 1471 412 310 75 14 chr9 116257996 116258143 -7818029 + MLT1I LTR MaLR 256 411 0 5 1471 927 242 129 25 chr9 116259140 116259504 -7816668 - MTD LTR MaLR -17 402 1 5 1471 495 331 13 13 chr9 116259504 116259652 -7816520 + ID_B1 SINE B4 37 184 -40 5 1471 300 298 9 63 chr9 116259559 116259670 -7816502 + PB1D10 SINE Alu 10 114 -3 5 183 798 290 67 105 chr9 116260735 116261124 -7815048 + MTEa LTR MaLR 3 376 -3 5 1472 318 243 0 14 chr9 116261246 116261317 -7814855 - RSINE1 SINE B4 -93 72 3 6 1472 204 122 0 0 chr9 116261406 116261447 -7814725 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1472 225 0 0 0 chr9 116262198 116262223 -7813949 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1472 1017 173 44 19 chr9 116262876 116263082 -7813090 + B3 SINE B2 6 216 0 6 1472 348 231 168 32 chr9 116264095 116264220 -7811952 - MTEa LTR MaLR -227 152 11 6 1472 443 100 14 0 chr9 116264529 116264599 -7811573 + (TCTCCC)n Simple_repeat Simple_repeat 1 71 0 6 1472 1347 182 169 108 chr9 116264612 116265049 -7811123 - MT2A LTR ERVL -69 464 1 6 1472 1763 122 0 103 chr9 116265259 116265617 -7810555 + ORR1A4 LTR MaLR 1 321 -8 6 1472 2420 116 8 155 chr9 116266674 116267203 -7808969 + RLTR11B LTR ERVK 1 451 -2 6 1472 277 211 0 0 chr9 116267510 116267562 -7808610 - RMER15 LTR ERVL -15 560 509 6 1472 811 154 40 13 chr9 116267568 116267719 -7808453 - RLTR42 LTR ERVK 0 239 85 6 1472 440 185 12 0 chr9 116268130 116268211 -7807961 - RLTR42 LTR ERVK -157 82 1 6 1472 332 258 145 63 chr9 116268222 116268535 -7807637 - RMER15 LTR ERVL -89 486 19 6 1472 244 254 73 51 chr9 116268783 116268920 -7807252 - MIR SINE MIR -43 219 80 6 1472 522 0 0 0 chr9 116270647 116270705 -7805467 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1472 250 289 0 24 chr9 116270705 116270790 -7805382 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 1472 225 254 9 17 chr9 116270813 116270929 -7805243 + (TG)n Simple_repeat Simple_repeat 1 115 0 6 1472 4869 109 48 4 chr9 116270952 116271655 -7804517 + RMER19A LTR ERVK 1 734 -3 6 1472 831 250 74 31 chr9 116271743 116271795 -7804377 - B4 SINE B4 -17 275 219 6 1472 1050 88 0 0 chr9 116271795 116271942 -7804230 + (TTCTC)n Simple_repeat Simple_repeat 4 150 0 6 1472 831 250 74 31 chr9 116271942 116272145 -7804027 - B4 SINE B4 -74 218 9 6 1472 915 247 14 53 chr9 116272174 116272529 -7803643 - RLTR15 LTR ERVK -18 341 1 6 1472 611 323 56 53 chr9 116272875 116272913 -7803259 + B4A SINE B4 1 30 -262 6 1472 1951 178 39 6 chr9 116272913 116273275 -7802897 - ORR1C1 LTR MaLR -4 374 1 6 1472 611 323 56 53 chr9 116273275 116273520 -7802652 + B4A SINE B4 31 285 -7 6 1472 232 200 14 14 chr9 116273540 116273611 -7802561 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1472 641 275 43 72 chr9 116273650 116273858 -7802314 + B3 SINE B2 1 202 -14 6 1472 407 179 0 21 chr9 116273926 116274023 -7802149 + (TATG)n Simple_repeat Simple_repeat 4 98 0 6 1472 204 222 0 0 chr9 116274033 116274069 -7802103 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1472 398 289 47 47 chr9 116274073 116274200 -7801972 - RSINE1 SINE B4 0 165 39 6 1472 207 162 0 0 chr9 116274843 116274880 -7801292 + CT-rich Low_complexity Low_complexity 1 37 0 6 1472 291 247 25 0 chr9 116274935 116275016 -7801156 - RSINE1 SINE B4 -72 93 11 6 1472 217 338 0 51 chr9 116275252 116275330 -7800842 + polypyrimidine Low_complexity Low_complexity 4 77 0 6 1472 1122 88 0 0 chr9 116275820 116275967 -7800205 - B1_Mus1 SINE Alu 0 148 2 6 1472 1305 93 4 0 chr9 116276484 116276718 -7799454 + (TTTC)n Simple_repeat Simple_repeat 1 234 0 6 1472 570 180 92 14 chr9 116276719 116276860 -7799312 - RMER13A LTR ERVK -708 152 1 6 1472 279 164 26 52 chr9 116276862 116276978 -7799194 + CT-rich Low_complexity Low_complexity 4 116 0 6 1472 754 201 145 11 chr9 116277641 116277827 -7798345 - B3 SINE B2 0 216 6 6 1472 216 0 0 0 chr9 116277890 116277914 -7798258 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1472 773 198 142 95 chr9 116278359 116278705 -7797467 + ORR1D2 LTR MaLR 1 409 -10 6 1472 324 119 0 0 chr9 116278720 116278779 -7797393 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 6 1472 374 323 107 14 chr9 116279182 116279528 -7796644 - Zaphod DNA Tip100 -47 3984 3607 6 1472 29 47 0 0 chr9 116279592 116279635 -7796537 + AT_rich Low_complexity Low_complexity 1 43 0 6 1472 247 210 32 16 chr9 116279956 116280019 -7796153 - L1P5 LINE L1 -274 5882 5819 6 1472 183 235 0 0 chr9 116280045 116280096 -7796076 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 6 1472 265 274 26 70 chr9 116280104 116280218 -7795954 - L1M2 LINE L1 -514 5786 5678 6 1472 598 304 22 11 chr9 116280585 116280768 -7795404 - Zaphod DNA Tip100 -3483 548 364 6 1472 428 310 9 0 chr9 116281088 116281204 -7794968 + B1F2 SINE Alu 1 117 -32 6 1472 267 31 0 0 chr9 116281205 116281237 -7794935 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1472 655 201 65 0 chr9 116281269 116281408 -7794764 + B3 SINE B2 69 216 0 6 1472 244 271 0 52 chr9 116282275 116282361 -7793811 - B1F SINE Alu -38 111 32 6 1472 21 0 0 0 chr9 116283002 116283023 -7793149 + AT_rich Low_complexity Low_complexity 1 21 0 6 1472 606 232 173 6 chr9 116283717 116283890 -7792282 + B3 SINE B2 2 203 -13 6 1472 204 182 0 0 chr9 116283890 116283934 -7792238 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 6 1472 390 306 121 17 chr9 116284522 116284695 -7791477 + B3A SINE B2 8 198 0 6 1472 401 308 7 52 chr9 116285676 116285830 -7790342 - B3 SINE B2 -61 155 9 6 1472 812 304 81 4 chr9 116285851 116286099 -7790073 + B4A SINE B4 1 267 -25 6 1472 1868 198 58 12 chr9 116286338 116286738 -7789434 + MTD LTR MaLR 2 419 0 6 1472 432 0 0 0 chr9 116287178 116287226 -7788946 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1472 345 47 0 0 chr9 116287226 116287268 -7788904 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1472 350 170 9 45 chr9 116288124 116288235 -7787937 + CT-rich Low_complexity Low_complexity 2 108 0 6 1472 822 219 91 15 chr9 116288796 116288995 -7787177 + B3 SINE B2 3 216 0 6 1472 477 250 92 27 chr9 116289167 116289352 -7786820 + B3A SINE B2 2 198 0 6 1472 189 0 0 0 chr9 116289497 116289518 -7786654 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1472 1325 60 5 0 chr9 116289552 116289736 -7786436 + MT2C_Mm LTR ERVL 291 475 0 6 1472 782 143 0 0 chr9 116290186 116290312 -7785860 - B3 SINE B2 -89 127 2 6 1472 592 246 56 50 chr9 116290488 116290668 -7785504 + B3A SINE B2 2 182 -16 6 1472 489 214 45 58 chr9 116290743 116290897 -7785275 - RSINE1 SINE B4 -2 163 12 6 1472 519 254 22 29 chr9 116291073 116291211 -7784961 - B1_Mur1 SINE Alu -10 139 3 6 1472 605 262 45 34 chr9 116291246 116291424 -7784748 - B3A SINE B2 -18 180 1 6 1472 1384 205 125 12 chr9 116291439 116291774 -7784398 - MTEa LTR MaLR -6 373 1 6 1472 330 256 100 82 chr9 116292483 116292653 -7783519 + MER5A DNA MER1_type 1 173 -16 6 1472 248 236 194 0 chr9 116293222 116293294 -7782878 - ORR1E LTR MaLR -6 373 288 6 1472 228 143 0 0 chr9 116293294 116293336 -7782836 + (TGGGGG)n Simple_repeat Simple_repeat 6 47 0 6 1472 845 204 57 42 chr9 116293350 116293602 -7782570 - ORR1E LTR MaLR -129 255 1 6 1472 378 107 0 0 chr9 116294283 116294339 -7781833 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 6 1472 342 0 0 0 chr9 116294460 116294498 -7781674 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1472 1093 73 0 0 chr9 116295558 116295695 -7780477 + B1_Mus2 SINE Alu 1 137 -10 6 1472 324 0 0 0 chr9 116295695 116295731 -7780441 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1472 340 282 78 31 chr9 116296062 116296190 -7779982 - ID_B1 SINE B4 -4 220 87 6 1472 1295 196 59 29 chr9 116296194 116296562 -7779610 + MTD LTR MaLR 1 379 0 6 1472 409 233 169 8 chr9 116299028 116299158 -7777014 - B3 SINE B2 -7 209 59 6 1472 495 87 0 0 chr9 116299344 116299413 -7776759 + (TGGA)n Simple_repeat Simple_repeat 2 70 0 6 1472 798 263 31 94 chr9 116299607 116299893 -7776279 - B4 SINE B4 0 292 25 6 1472 418 226 45 36 chr9 116300146 116300256 -7775916 + PB1D10 SINE Alu 1 111 -6 6 1472 412 287 98 0 chr9 116300433 116300607 -7775565 - MER53 DNA hAT -1 192 2 6 1472 238 258 15 0 chr9 116300843 116300909 -7775263 + ID4_ SINE ID 3 69 -14 6 1472 308 189 14 0 chr9 116301691 116301765 -7774407 + G-rich Low_complexity Low_complexity 5 79 0 6 1472 776 150 12 23 chr9 116301768 116301939 -7774233 + CT-rich Low_complexity Low_complexity 4 172 0 6 1472 371 193 12 0 chr9 116301927 116302010 -7774162 + C-rich Low_complexity Low_complexity 3 86 0 6 1472 562 226 12 66 chr9 116302052 116302218 -7773954 + ORR1D2 LTR MaLR 6 162 -197 6 1472 628 246 163 10 chr9 116302411 116302620 -7773552 + ORR1D2 LTR MaLR 130 370 0 6 1472 253 269 30 32 chr9 116302683 116302793 -7773379 - PB1D7 SINE Alu -4 116 9 6 1472 274 317 61 20 chr9 116303047 116303195 -7772977 + MTEa LTR MaLR 226 379 0 6 1472 1138 97 17 0 chr9 116303584 116303760 -7772412 + B2_Mm2 SINE B2 15 193 -2 6 1472 531 0 0 0 chr9 116303837 116303896 -7772276 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1472 298 306 0 0 chr9 116303909 116303994 -7772178 + B4A SINE B4 202 286 -6 6 1472 348 226 0 0 chr9 116304082 116304175 -7771997 + GA-rich Low_complexity Low_complexity 3 95 0 6 1472 1410 99 36 0 chr9 116304398 116304621 -7771551 + RLTR14 LTR ERV1 2 232 -150 6 1472 307 213 202 9 chr9 116304644 116304753 -7771419 - Lx4B LINE L1 -4 7054 6925 6 1472 979 157 13 0 chr9 116304753 116304912 -7771260 + RLTR14 LTR ERV1 222 382 0 6 1472 1162 286 9 25 chr9 116305737 116306063 -7770109 - ORR1D2 LTR MaLR -12 358 38 6 1472 252 350 79 21 chr9 116306054 116306244 -7769928 - LTR16B LTR ERVL -26 437 237 6 1472 814 271 10 0 chr9 116306930 116307137 -7769035 + MTEa LTR MaLR 2 210 -169 6 1472 774 183 0 0 chr9 116307137 116307301 -7768871 + (TG)n Simple_repeat Simple_repeat 1 164 0 6 1472 472 278 53 53 chr9 116307301 116307472 -7768700 + MTEa LTR MaLR 209 379 0 6 1472 651 131 8 30 chr9 116307900 116308034 -7768138 + GA-rich Low_complexity Low_complexity 1 131 0 6 1472 198 0 0 0 chr9 116308682 116308704 -7767468 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1472 180 0 0 0 chr9 116309005 116309025 -7767147 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 1472 204 97 0 0 chr9 116309130 116309161 -7767011 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1472 1123 95 0 0 chr9 116309161 116309308 -7766864 - B1_Mus2 SINE Alu 0 147 1 7 1472 1191 263 88 26 chr9 116309442 116309828 -7766344 - Lx8 LINE L1 -246 7227 6818 7 1472 293 328 104 12 chr9 116310166 116310339 -7765833 + ORR1E LTR MaLR 12 200 -159 7 1472 499 40 13 13 chr9 116310363 116310438 -7765734 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1472 462 250 107 0 chr9 116311354 116311466 -7764706 + ID_B1 SINE B4 94 217 -7 7 1472 304 341 57 29 chr9 116311473 116311648 -7764524 + B4A SINE B4 1 180 -112 7 1472 414 286 18 24 chr9 116311870 116312035 -7764137 + RSINE1 SINE B4 2 165 0 7 1472 2296 50 16 0 chr9 116312184 116312681 -7763491 - RLTR10C LTR ERVK 0 436 1 7 1472 535 278 7 14 chr9 116313194 116313340 -7762832 + RSINE1 SINE B4 2 146 -19 7 1472 339 25 0 0 chr9 116313357 116313397 -7762775 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1472 27 0 0 0 chr9 116313491 116313518 -7762654 + AT_rich Low_complexity Low_complexity 1 27 0 7 1472 287 316 42 0 chr9 116313584 116313679 -7762493 - MER5B DNA MER1_type 0 178 80 7 1472 359 209 35 11 chr9 116313970 116314057 -7762115 + RSINE1 SINE B4 16 104 -61 7 1472 355 266 64 0 chr9 116314176 116314285 -7761887 + PB1D10 SINE Alu 2 117 0 7 1472 1094 208 19 14 chr9 116314294 116314504 -7761668 + B3 SINE B2 4 214 -2 7 1472 752 246 234 20 chr9 116314890 116315189 -7760983 - ORR1D2 LTR MaLR 0 370 8 7 1472 343 164 41 0 chr9 116315801 116315874 -7760298 + HAL1-3A_ME LINE L1 1952 2027 -831 7 1472 256 188 14 14 chr9 116315875 116315945 -7760227 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1472 748 232 36 21 chr9 116315961 116316174 -7759998 - B3 SINE B2 0 216 2 7 1472 288 130 0 0 chr9 116316302 116316348 -7759824 + (ATG)n Simple_repeat Simple_repeat 1 46 0 7 1472 466 209 80 58 chr9 116316620 116316757 -7759415 - B1F SINE Alu -3 146 7 7 1472 21 0 0 0 chr9 116317080 116317101 -7759071 + AT_rich Low_complexity Low_complexity 1 21 0 7 1472 867 276 55 127 chr9 116317475 116317878 -7758294 - MTE2a LTR MaLR 0 379 6 7 1472 630 157 26 0 chr9 116318273 116318388 -7757784 + B3 SINE B2 7 124 -92 7 1472 444 160 20 10 chr9 116318662 116318763 -7757409 + CT-rich Low_complexity Low_complexity 3 104 0 7 1472 510 31 0 0 chr9 116318763 116318827 -7757345 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1472 468 285 55 7 chr9 116318827 116318972 -7757200 - B3A SINE B2 -44 154 3 7 1472 391 362 5 42 chr9 116319052 116319245 -7756927 - Lx8 LINE L1 -254 7219 7034 7 1472 908 237 24 0 chr9 116319985 116320196 -7755976 + B3 SINE B2 1 216 0 7 1472 1158 232 93 63 chr9 116320802 116321198 -7754974 - MTD LTR MaLR 0 419 12 7 1472 305 173 222 0 chr9 116321578 116321659 -7754513 + PB1D7 SINE Alu 3 101 -19 7 1472 550 268 85 0 chr9 116321699 116321852 -7754320 - B4A SINE B4 0 292 127 7 1472 399 244 112 9 chr9 116321857 116321973 -7754199 - B1F SINE Alu -21 128 1 7 1472 362 254 6 157 chr9 116322327 116322486 -7753686 - B1F SINE Alu -8 141 7 7 1472 581 284 40 80 chr9 116323138 116323387 -7752785 - B4 SINE B4 -53 239 1 7 1472 853 239 46 0 chr9 116323576 116323773 -7752399 + B3 SINE B2 3 208 -8 7 1472 1334 130 14 0 chr9 116323913 116324129 -7752043 - URR1B DNA MER1_type -4 221 3 7 1472 1583 241 23 3 chr9 116324889 116325275 -7750897 + MTD LTR MaLR 18 411 -8 7 1472 508 170 19 59 chr9 116325901 116326345 -7749827 + (TG)n Simple_repeat Simple_repeat 1 426 0 7 1472 322 277 71 0 chr9 116326594 116326706 -7749466 + RSINE1 SINE B4 26 145 -20 7 1472 1371 158 208 13 chr9 116327796 116328109 -7748063 + ORR1D1 LTR MaLR 1 374 0 7 1472 478 260 66 13 chr9 116328917 116329069 -7747103 - ID_B1 SINE B4 0 224 65 7 1472 486 33 0 0 chr9 116329164 116329224 -7746948 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1472 858 218 0 0 chr9 116329232 116329388 -7746784 - B3A SINE B2 -42 156 1 7 1472 407 326 57 75 chr9 116329424 116330001 -7746171 - L1M5 LINE L1 -1800 4346 3788 7 1472 304 361 109 41 chr9 116330053 116330567 -7745605 - MER77 LTR ERVL -5 602 54 7 1472 863 307 86 49 chr9 116330821 116331634 -7744538 - L1M5 LINE L1 -2629 3517 2675 7 1472 326 122 0 0 chr9 116331890 116331939 -7744233 - Lx8 LINE L1 -9 7464 7416 7 1472 299 345 119 20 chr9 116332273 116332424 -7743748 - LTR33B LTR ERVL -298 205 40 7 1472 380 292 46 0 chr9 116332660 116332790 -7743382 + RSINE1 SINE B4 2 137 -28 7 1472 665 233 0 0 chr9 116332894 116333027 -7743145 + ID_B1 SINE B4 92 224 0 7 1472 413 50 0 16 chr9 116333878 116333939 -7742233 + (GGGA)n Simple_repeat Simple_repeat 3 62 0 7 1472 210 91 0 0 chr9 116334480 116334513 -7741659 + (CAA)n Simple_repeat Simple_repeat 2 34 0 7 1472 1047 43 0 35 chr9 116334771 116334915 -7741257 + B1_Mus1 SINE Alu 10 148 0 7 1472 933 256 84 0 chr9 116334944 116335218 -7740954 + MTD LTR MaLR 123 419 0 7 1472 694 301 0 0 chr9 116335937 116336123 -7740049 - ID_B1 SINE B4 -36 188 3 7 1472 285 236 13 40 chr9 116336285 116336360 -7739812 - B1_Mur3 SINE Alu -69 80 8 7 1472 683 221 0 26 chr9 116336300 116336453 -7739719 - B4 SINE B4 -140 152 4 7 1472 181 237 119 0 chr9 116337261 116337320 -7738852 - MIRc SINE MIR -141 127 62 7 1472 1897 111 87 3 chr9 116340011 116340309 -7735863 - ORR1A2 LTR MaLR 0 327 5 7 1472 226 244 10 122 chr9 116340805 116340903 -7735269 + MER110A LTR ERV1 80 166 -302 7 1472 721 291 53 66 chr9 116342058 116342143 -7734029 - ORR1E LTR MaLR -7 352 271 7 1472 1152 112 152 5 chr9 116342143 116342340 -7733832 + URR1A DNA MER1_type 1 226 0 7 1472 721 291 53 66 chr9 116342340 116342556 -7733616 - ORR1E LTR MaLR -89 270 55 7 1472 545 245 1 9 chr9 116342575 116342698 -7733474 - B1F1 SINE Alu -15 134 12 7 1472 964 127 6 11 chr9 116342758 116342933 -7733239 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 7 1472 513 0 0 0 chr9 116342936 116342993 -7733179 + (TTTCC)n Simple_repeat Simple_repeat 4 60 0 7 1472 180 0 0 0 chr9 116342993 116343013 -7733159 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 7 1472 557 222 26 0 chr9 116343016 116343133 -7733039 - B1_Mur1 SINE Alu -27 122 3 7 1472 332 297 61 35 chr9 116343032 116343147 -7733025 - B4 SINE B4 -98 194 77 7 1472 477 0 0 0 chr9 116343249 116343302 -7732870 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1472 315 0 0 0 chr9 116343302 116343336 -7732836 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1472 913 299 44 47 chr9 116343367 116343707 -7732465 + ORR1E LTR MaLR 1 339 -20 7 1472 1114 237 84 19 chr9 116343738 116343790 -7732382 + ORR1E LTR MaLR 11 60 -299 7 1472 270 0 0 0 chr9 116343790 116343820 -7732352 + (CTG)n Simple_repeat Simple_repeat 2 31 0 7 1472 1114 237 84 19 chr9 116343820 116344089 -7732083 + ORR1E LTR MaLR 61 352 -7 7 1472 468 0 0 0 chr9 116344787 116344839 -7731333 + (TAAG)n Simple_repeat Simple_repeat 4 55 0 7 1472 237 222 0 0 chr9 116344999 116345053 -7731119 - L1M5 LINE L1 -1335 4811 4758 7 1472 228 330 54 0 chr9 116345755 116345867 -7730305 - MamRep605 Unknown Unknown -151 725 608 7 1472 231 234 188 0 chr9 116345959 116346023 -7730149 - ID4_ SINE ID -3 80 5 7 1472 391 270 0 0 chr9 116346037 116346126 -7730046 + B4 SINE B4 1 89 -203 7 1472 8327 47 1 3 chr9 116346126 116347135 -7729037 + L1_Mus1 LINE L1 5587 6567 0 7 1472 612 338 9 42 chr9 116347140 116347356 -7728816 + B4 SINE B4 82 290 -2 7 1472 324 102 0 0 chr9 116347387 116347436 -7728736 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1472 253 265 137 0 chr9 116347574 116347676 -7728496 + PB1D10 SINE Alu 2 117 0 7 1472 287 167 60 15 chr9 116347760 116347827 -7728345 - MLT1G3 LTR MaLR -157 438 369 7 1472 1030 338 3 0 chr9 116348542 116348826 -7727346 - B4 SINE B4 -4 288 4 7 1472 24 0 0 0 chr9 116348903 116348927 -7727245 + AT_rich Low_complexity Low_complexity 1 24 0 7 1472 309 302 166 0 chr9 116349178 116349317 -7726855 - MER20 DNA MER1_type -3 216 55 7 1472 560 330 40 5 chr9 116349552 116349753 -7726419 - ID_B1 SINE B4 -4 220 13 7 1472 535 288 12 58 chr9 116349788 116349961 -7726211 - B3A SINE B2 -11 187 23 7 1472 429 103 0 0 chr9 116350568 116350636 -7725536 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1472 703 274 52 5 chr9 116350686 116350899 -7725273 - B4 SINE B4 -69 223 1 7 1472 645 245 61 0 chr9 116350912 116351075 -7725097 + ORR1D2 LTR MaLR 9 181 -189 7 1472 210 143 0 0 chr9 116351079 116351114 -7725058 + (TCTCC)n Simple_repeat Simple_repeat 2 36 0 7 1472 2907 36 0 0 chr9 116351114 116351449 -7724723 + IAPLTR1a_Mm LTR ERVK 1 335 -2 7 1472 362 127 0 0 chr9 116351450 116351505 -7724667 + IAPEz-int LTR ERVK 3 57 -1930 7 1472 5006 55 5 35 chr9 116351486 116352152 -7724020 + IAPEz-int LTR ERVK 17 662 -5819 7 1472 454 66 0 32 chr9 116352152 116352215 -7723957 + IAPEz-int LTR ERVK 1359 1419 -5062 7 1472 1869 111 4 4 chr9 116352204 116352466 -7723706 + IAPEz-int LTR ERVK 2236 2497 -5183 7 1472 953 80 24 0 chr9 116352461 116352586 -7723586 + IAPEz-int LTR ERVK 4783 4910 -2770 7 1472 21638 11 2 0 chr9 116352588 116354942 -7721230 + IAPEz-int LTR ERVK 4123 6481 0 7 1472 2613 33 0 0 chr9 116354942 116355274 -7720898 + IAPLTR1a_Mm LTR ERVK 1 332 -5 7 1472 645 235 103 5 chr9 116355306 116355490 -7720682 + ORR1D2 LTR MaLR 169 370 0 7 1472 228 233 0 0 chr9 116355491 116355534 -7720638 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1472 212 238 55 77 chr9 116356725 116356816 -7719356 - PB1D7 SINE Alu -2 118 30 7 1472 236 336 51 17 chr9 116356807 116356925 -7719247 - B4A SINE B4 -169 123 2 7 1472 393 39 0 0 chr9 116357559 116357610 -7718562 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1472 205 27 81 0 chr9 116357615 116357652 -7718520 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 1472 519 17 0 0 chr9 116358985 116359045 -7717127 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1472 258 291 58 90 chr9 116360197 116360352 -7715820 + B4A SINE B4 143 292 0 8 1472 374 276 6 0 chr9 116360430 116360604 -7715568 + (CA)n Simple_repeat Simple_repeat 2 176 0 8 1472 237 291 23 23 chr9 116360708 116360796 -7715376 - B4 SINE B4 -204 88 1 8 1472 486 339 25 61 chr9 116361039 116361316 -7714856 - MER21B LTR ERV1 -173 690 424 8 1472 1156 130 124 5 chr9 116361677 116361878 -7714294 - URR1A DNA MER1_type 0 226 2 8 1472 283 241 82 86 chr9 116362213 116362361 -7713811 + L1M7 LINE L1 1075 1195 -814 8 1472 361 245 40 20 chr9 116363098 116363198 -7712974 + RSINE1 SINE B4 1 102 -63 8 1472 369 131 0 0 chr9 116363622 116363683 -7712489 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1472 397 322 75 40 chr9 116363738 116363964 -7712208 - B4 SINE B4 -11 281 48 8 1472 4932 229 105 8 chr9 116363993 116365175 -7710997 - Lx7 LINE L1 -365 7331 6035 8 1472 259 314 75 17 chr9 116365188 116365308 -7710864 - B1F SINE Alu -18 131 5 8 1472 1246 218 80 62 chr9 116365602 116365939 -7710233 - ORR1E LTR MaLR -1 358 16 8 1472 542 186 14 14 chr9 116367102 116367249 -7708923 + (TA)n Simple_repeat Simple_repeat 2 148 0 8 1472 291 211 66 66 chr9 116367436 116367512 -7708660 + B3A SINE B2 2 77 -121 8 1472 700 217 54 26 chr9 116367535 116367759 -7708413 + B3A SINE B2 6 216 0 8 1472 711 333 25 0 chr9 116367767 116367971 -7708201 + B4 SINE B4 82 290 -2 8 1472 301 244 369 6 chr9 116368061 116368218 -7707954 - L1_Mur3 LINE L1 -1911 3969 3756 8 1472 396 0 0 0 chr9 116368859 116368903 -7707269 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1472 2166 163 13 11 chr9 116368966 116369344 -7706828 + L1_Mur3 LINE L1 4811 5189 -691 8 1472 402 261 11 0 chr9 116369386 116369474 -7706698 - B4 SINE B4 -203 89 1 8 1472 324 292 0 74 chr9 116369474 116369490 -7706682 - PB1D10 SINE Alu 0 117 5 8 1472 405 340 0 0 chr9 116369490 116369596 -7706576 - ID_B1 SINE B4 -33 191 86 8 1472 521 65 26 0 chr9 116369689 116369766 -7706406 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 8 1472 2194 110 25 0 chr9 116369906 116370224 -7705948 - ORR1A2 LTR MaLR 0 327 2 8 1472 2219 151 2 72 chr9 116370357 116370800 -7705372 - MTC LTR MaLR 0 421 10 8 1472 3568 151 121 3 chr9 116370806 116371419 -7704753 + Lx5 LINE L1 6309 6993 -57 8 1472 4211 178 66 27 chr9 116371484 116372408 -7703764 - MTC-int LTR MaLR -2 1256 297 8 1472 1703 113 96 0 chr9 116372407 116372700 -7703472 - ORR1A4 LTR MaLR -8 321 1 8 1472 1151 194 92 7 chr9 116372701 116372982 -7703190 - MTC-int LTR MaLR -953 305 1 8 1472 2190 164 26 126 chr9 116372982 116373359 -7702813 - MTC LTR MaLR 0 421 81 8 1472 204 40 0 0 chr9 116373359 116373384 -7702788 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 8 1472 2190 164 26 126 chr9 116373384 116373474 -7702698 - MTC LTR MaLR -341 80 1 8 1472 446 0 19 0 chr9 116373735 116373789 -7702383 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 8 1472 241 180 14 116 chr9 116373956 116374025 -7702147 + ID_B1 SINE B4 82 143 -81 8 1472 221 163 47 0 chr9 116374121 116374164 -7702008 - PB1D10 SINE Alu -10 107 63 8 1472 230 81 0 26 chr9 116374174 116374212 -7701960 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 8 1472 1343 35 0 17 chr9 116374212 116374386 -7701786 + (GGAGA)n Simple_repeat Simple_repeat 3 173 0 8 1472 607 290 10 20 chr9 116374510 116374707 -7701465 - ID_B1 SINE B4 -28 196 2 8 1472 365 189 0 172 chr9 116374861 116374989 -7701183 - PB1D9 SINE Alu -9 111 6 8 1472 283 326 0 43 chr9 116374934 116375027 -7701145 - ID_B1 SINE B4 -83 141 53 8 1472 946 291 58 50 chr9 116375366 116375782 -7700390 - MTD LTR MaLR 0 419 1 8 1472 468 0 0 0 chr9 116376131 116376183 -7699989 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1472 370 224 101 36 chr9 116376925 116377064 -7699108 + B1F1 SINE Alu 2 149 0 8 1472 556 203 87 8 chr9 116377222 116377380 -7698792 - ORR1C2 LTR MaLR -5 379 198 8 1472 323 162 132 0 chr9 116377367 116377435 -7698737 - ORR1C2 LTR MaLR -301 77 1 8 1472 768 242 43 0 chr9 116378726 116378887 -7697285 + B3A SINE B2 1 168 -30 8 1472 523 0 15 15 chr9 116378892 116378960 -7697212 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 1472 1007 246 59 113 chr9 116379175 116379565 -7696607 + MTE2a LTR MaLR 1 369 -10 8 1472 26 0 0 0 chr9 116379900 116379926 -7696246 + AT_rich Low_complexity Low_complexity 1 26 0 8 1472 607 227 3 24 chr9 116379944 116380276 -7695896 + (TATG)n Simple_repeat Simple_repeat 1 324 0 8 1472 340 208 27 135 chr9 116380296 116380407 -7695765 - B3A SINE B2 -16 182 84 8 1472 348 43 0 0 chr9 116380610 116380656 -7695516 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 8 1472 405 0 0 0 chr9 116380658 116380703 -7695469 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1472 759 226 25 35 chr9 116381004 116381201 -7694971 + MTD LTR MaLR 1 195 -224 8 1472 229 182 0 0 chr9 116381185 116381229 -7694943 - MTE2b LTR MaLR -134 245 202 8 1472 485 213 6 0 chr9 116381230 116381399 -7694773 + GA-rich Low_complexity Low_complexity 1 170 0 8 1472 704 252 45 25 chr9 116381405 116381604 -7694568 - MTE2b LTR MaLR -168 211 9 8 1472 905 204 9 56 chr9 116382049 116382262 -7693910 + B3 SINE B2 2 204 -12 8 1472 441 0 0 0 chr9 116383162 116383211 -7692961 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1472 342 0 0 0 chr9 116383211 116383249 -7692923 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1472 715 98 0 15 chr9 116383521 116383655 -7692517 + (CCA)n Simple_repeat Simple_repeat 1 132 0 8 1472 512 296 71 0 chr9 116385369 116385538 -7690634 - B3 SINE B2 -5 211 31 8 1472 1218 26 19 26 chr9 116385752 116386062 -7690110 + (CA)n Simple_repeat Simple_repeat 1 307 0 8 1472 773 276 56 61 chr9 116386422 116386781 -7689391 - ORR1E LTR MaLR -2 357 1 8 1472 285 235 23 34 chr9 116387233 116387321 -7688851 + GA-rich Low_complexity Low_complexity 4 90 0 8 1472 322 176 12 12 chr9 116387321 116387407 -7688765 + G-rich Low_complexity Low_complexity 4 89 0 8 1472 210 71 0 0 chr9 116388428 116388456 -7687716 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 8 1472 1949 98 3 64 chr9 116388797 116389124 -7687048 - ORR1A2 LTR MaLR -20 307 1 8 1472 765 231 149 102 chr9 116389219 116389581 -7686591 + MTE2a LTR MaLR 1 379 0 8 1472 460 304 68 7 chr9 116390278 116390424 -7685748 - B3A SINE B2 -41 157 3 8 1472 866 109 0 7 chr9 116390428 116390566 -7685606 + (TTCC)n Simple_repeat Simple_repeat 1 137 0 8 1472 453 370 123 6 chr9 116391422 116391746 -7684426 - MLT1G3 LTR MaLR -71 524 163 8 1473 1798 173 30 0 chr9 116392193 116392528 -7683644 - ORR1C1 LTR MaLR -1 377 33 8 1473 276 267 198 0 chr9 116392614 116392730 -7683442 - RSINE1 SINE B4 -26 139 1 8 1473 566 351 49 33 chr9 116392860 116393249 -7682923 - Lx8 LINE L1 -9 7464 7070 8 1473 340 235 296 32 chr9 116394641 116394823 -7681349 - B4 SINE B4 -62 230 1 8 1473 596 309 83 35 chr9 116394824 116395199 -7680973 - MER34 LTR ERV1 -103 439 47 8 1473 244 284 58 107 chr9 116395240 116395445 -7680727 - MTEb LTR MaLR -1 378 184 8 1473 399 213 26 44 chr9 116395452 116395565 -7680607 + PB1D7 SINE Alu 9 119 -1 8 1473 752 100 8 0 chr9 116396079 116396199 -7679973 + (TG)n Simple_repeat Simple_repeat 2 122 0 8 1473 456 19 0 0 chr9 116397281 116397334 -7678838 + (TC)n Simple_repeat Simple_repeat 1 53 0 8 1473 697 257 40 9 chr9 116397585 116397809 -7678363 - L1MA4 LINE L1 -362 5938 5708 8 1473 271 260 50 10 chr9 116397878 116397979 -7678193 - PB1D10 SINE Alu -2 115 11 8 1473 430 255 121 0 chr9 116397903 116398052 -7678120 - ID_B1 SINE B4 -56 168 2 8 1473 799 188 97 0 chr9 116399064 116399218 -7676954 - B3A SINE B2 -29 169 1 8 1473 428 269 68 45 chr9 116399218 116399529 -7676643 - L1M4 LINE L1 -3104 3042 2725 8 1473 339 258 57 97 chr9 116399578 116399636 -7676536 - L1M4 LINE L1 -3867 2279 2226 8 1473 261 0 0 0 chr9 116399636 116399665 -7676507 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1473 339 258 57 97 chr9 116399665 116399782 -7676390 - L1M4 LINE L1 -3921 2225 2111 8 1473 599 291 17 6 chr9 116400005 116400106 -7676066 + B3A SINE B2 1 101 -97 8 1473 1583 218 85 10 chr9 116400106 116400496 -7675676 + MTD LTR MaLR 1 419 0 8 1473 599 291 17 6 chr9 116400496 116400574 -7675598 + B3A SINE B2 102 181 -17 8 1473 464 298 16 63 chr9 116400722 116400882 -7675290 - MLT1B LTR MaLR -2 388 238 8 1473 279 296 37 0 chr9 116400882 116400963 -7675209 + MLT1A0 LTR MaLR 1 84 -290 8 1473 284 370 31 52 chr9 116401038 116401232 -7674940 + MLT1A0 LTR MaLR 74 263 -102 8 1473 352 243 110 41 chr9 116401347 116401493 -7674679 - MLT1B LTR MaLR -220 170 15 8 1473 490 291 14 29 chr9 116401906 116402044 -7674128 - ID_B1 SINE B4 -7 217 82 8 1473 210 247 0 268 chr9 116402667 116402794 -7673378 + B1_Mur2 SINE Alu 2 94 -55 8 1473 229 333 0 47 chr9 116402949 116403034 -7673138 + ID4_ SINE ID 2 82 -1 8 1473 984 119 0 100 chr9 116404805 116405313 -7670859 + CT-rich Low_complexity Low_complexity 1 457 0 8 1473 307 335 69 41 chr9 116405676 116405894 -7670278 + LTR89 LTR ERVL? 614 837 -42 8 1473 261 222 0 0 chr9 116406015 116406078 -7670094 + (TATG)n Simple_repeat Simple_repeat 4 66 0 8 1473 205 261 0 0 chr9 116406108 116406154 -7670018 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1473 609 252 0 56 chr9 116406758 116406918 -7669254 + MTEa LTR MaLR 15 165 -214 8 1473 951 224 25 10 chr9 116407146 116407344 -7668828 + B3 SINE B2 2 202 -14 8 1473 1679 155 129 24 chr9 116407683 116408054 -7668118 + RMER17C LTR ERVK 1 410 0 8 1473 491 258 7 52 chr9 116408311 116408446 -7667726 - B1F SINE Alu -15 134 6 8 1473 213 265 41 0 chr9 116408979 116409028 -7667144 + B3A SINE B2 60 110 -88 8 1473 369 43 0 0 chr9 116409063 116409110 -7667062 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1473 500 227 51 62 chr9 116409473 116409672 -7666500 - RLTR11B LTR ERVK -258 187 1 8 1473 229 281 0 0 chr9 116409976 116410033 -7666139 + B3A SINE B2 15 71 -127 9 1473 485 238 118 30 chr9 116410390 116410559 -7665613 + RLTR41 LTR ERV1 263 446 0 9 1473 254 278 153 0 chr9 116410559 116410631 -7665541 + B3A SINE B2 68 150 -48 9 1473 384 88 0 0 chr9 116410633 116410690 -7665482 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1473 794 289 56 112 chr9 116411160 116411588 -7664584 + MTD LTR MaLR 1 404 -15 9 1473 209 333 15 0 chr9 116412589 116412655 -7663517 + (CATG)n Simple_repeat Simple_repeat 1 67 0 9 1473 524 306 21 41 chr9 116412727 116412921 -7663251 - B3A SINE B2 0 198 9 9 1473 591 284 27 0 chr9 116413566 116413714 -7662458 - RSINE1 SINE B4 -12 153 2 9 1473 621 272 33 28 chr9 116413984 116414196 -7661976 - B3 SINE B2 0 216 4 9 1473 910 298 99 23 chr9 116414196 116414523 -7661649 - L1MD LINE L1 -1759 4387 4024 9 1473 279 54 0 0 chr9 116414523 116414560 -7661612 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1473 910 298 99 23 chr9 116414560 116414789 -7661383 - L1MD LINE L1 -2123 4023 3790 9 1473 283 345 0 0 chr9 116414863 116414973 -7661199 - MER44B DNA MER2_type -434 116 7 9 1473 21 0 0 0 chr9 116415024 116415045 -7661127 + AT_rich Low_complexity Low_complexity 1 21 0 9 1473 789 282 9 11 chr9 116415243 116415437 -7660735 - B3A SINE B2 -11 182 2 9 1473 289 390 14 0 chr9 116416041 116416182 -7659990 - ORR1E LTR MaLR -215 144 2 9 1473 251 303 40 10 chr9 116416249 116416349 -7659823 - MER44B DNA MER2_type -434 116 14 9 1473 329 216 75 54 chr9 116416458 116416551 -7659621 + B4A SINE B4 2 96 -196 9 1473 272 211 0 13 chr9 116417369 116417446 -7658726 + (CA)n Simple_repeat Simple_repeat 1 76 0 9 1473 853 223 44 5 chr9 116418022 116418225 -7657947 - B3 SINE B2 -5 211 1 9 1473 231 315 0 0 chr9 116418728 116418801 -7657371 - ID4_ SINE ID -10 73 1 9 1473 207 0 0 0 chr9 116418803 116418826 -7657346 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 9 1473 365 267 1 40 chr9 116418829 116418956 -7657216 - PB1D10 SINE Alu 0 117 2 9 1473 548 326 64 22 chr9 116419070 116419381 -7656791 + Lx9 LINE L1 7199 7522 -122 9 1473 320 276 90 79 chr9 116419513 116419690 -7656482 + B4A SINE B4 106 284 -8 9 1473 258 367 0 0 chr9 116419828 116419926 -7656246 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 9 1473 848 235 11 6 chr9 116419926 116420106 -7656066 - B3A SINE B2 -16 182 2 9 1473 195 132 105 0 chr9 116420983 116421021 -7655151 - MIRm SINE MIR -145 131 90 9 1473 351 181 0 0 chr9 116421187 116421259 -7654913 + (TG)n Simple_repeat Simple_repeat 2 73 0 9 1473 346 143 26 0 chr9 116421260 116421337 -7654835 + GA-rich Low_complexity Low_complexity 2 80 0 9 1473 207 326 0 20 chr9 116421373 116421473 -7654699 + (TATG)n Simple_repeat Simple_repeat 3 100 0 9 1473 230 374 0 0 chr9 116421439 116421618 -7654554 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1473 239 360 6 22 chr9 116421981 116422160 -7654012 + (TG)n Simple_repeat Simple_repeat 2 177 0 9 1473 890 106 114 0 chr9 116422516 116422648 -7653524 - B1_Mus2 SINE Alu 0 147 1 9 1473 588 304 12 23 chr9 116422804 116422947 -7653225 + B3A SINE B2 28 171 -27 9 1473 207 0 0 0 chr9 116422947 116422970 -7653202 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 1473 252 0 0 0 chr9 116422970 116422997 -7653175 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1473 588 304 12 23 chr9 116422997 116423024 -7653148 + B3A SINE B2 172 196 -2 9 1473 286 280 97 83 chr9 116423246 116423390 -7652782 + B4 SINE B4 5 150 -142 9 1473 264 170 0 0 chr9 116423489 116423542 -7652630 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 9 1473 681 267 45 25 chr9 116423635 116423835 -7652337 + B3 SINE B2 2 205 -11 9 1473 3121 23 0 0 chr9 116423896 116424242 -7651930 + ORR1A0 LTR MaLR 1 346 0 9 1473 255 306 168 27 chr9 116424825 116425052 -7651120 - MLT1H1 LTR MaLR -286 305 46 9 1473 249 243 140 0 chr9 116425052 116425150 -7651022 + L1MA4 LINE L1 5752 5929 -371 9 1473 249 33 0 0 chr9 116425981 116426011 -7650161 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1473 297 323 21 0 chr9 116426562 116426655 -7649517 - B4A SINE B4 -178 114 20 9 1473 423 0 0 0 chr9 116427454 116427501 -7648671 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1473 376 304 43 22 chr9 116427524 116427662 -7648510 - RSINE1 SINE B4 -22 143 3 9 1473 680 273 10 14 chr9 116428024 116428232 -7647940 + ORR1E LTR MaLR 6 212 -147 9 1473 1094 125 68 0 chr9 116428781 116428957 -7647215 + L1_Mus4 LINE L1 6442 6629 -7 9 1473 409 221 35 26 chr9 116429011 116429127 -7647045 - RLTR23 LTR ERV1 0 430 314 9 1473 827 215 94 122 chr9 116429572 116429900 -7646272 - ORR1E LTR MaLR -33 326 8 9 1473 373 279 31 109 chr9 116430294 116430593 -7645579 - MTE2a LTR MaLR -161 260 1 9 1473 258 263 79 0 chr9 116430656 116430732 -7645440 + MLT1H LTR MaLR 152 233 -316 9 1473 381 43 0 0 chr9 116431731 116431778 -7644394 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1473 448 266 40 8 chr9 116431790 116431915 -7644257 - RSINE1 SINE B4 -35 130 2 9 1473 483 196 19 19 chr9 116432069 116432173 -7643999 + MTC LTR MaLR 5 108 -313 9 1473 307 235 37 0 chr9 116432206 116432287 -7643885 + MTC LTR MaLR 213 296 -123 9 1473 214 152 34 0 chr9 116432668 116432727 -7643445 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 9 1473 740 211 61 78 chr9 116433691 116433922 -7642250 + B4 SINE B4 66 292 0 9 1473 275 298 98 15 chr9 116434793 116434926 -7641246 + B1F1 SINE Alu 1 144 -5 9 1473 445 267 195 48 chr9 116435097 116435360 -7640812 + MTEb LTR MaLR 65 366 -13 9 1473 252 0 0 0 chr9 116436588 116436616 -7639556 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1473 501 217 112 35 chr9 116436943 116437115 -7639057 - B3A SINE B2 -4 191 5 9 1473 732 319 25 7 chr9 116437558 116437839 -7638333 + B4A SINE B4 1 286 -6 9 1473 706 119 51 0 chr9 116437886 116438004 -7638168 - RMER6C LTR ERVK 0 690 567 9 1473 1905 146 147 5 chr9 116437978 116438385 -7637787 - RMER6C LTR ERVK -225 465 1 9 1473 305 309 64 61 chr9 116439666 116439962 -7636210 - L1ME1 LINE L1 -302 5877 5581 9 1473 279 0 0 0 chr9 116440104 116440135 -7636037 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1473 315 0 0 0 chr9 116440135 116440169 -7636003 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1473 659 294 43 0 chr9 116440341 116440528 -7635644 + B3A SINE B2 2 196 -2 9 1473 1055 286 36 64 chr9 116441437 116441826 -7634346 + MTEa LTR MaLR 1 378 -1 9 1473 959 228 10 0 chr9 116441905 116442107 -7634065 - B3 SINE B2 -11 205 2 9 1473 624 228 42 32 chr9 116442596 116442786 -7633386 + B3A SINE B2 3 194 -4 9 1473 422 270 52 76 chr9 116443615 116443787 -7632385 + MLT1A0 LTR MaLR 155 322 -43 9 1473 231 36 0 0 chr9 116443909 116443937 -7632235 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 9 1473 795 145 83 0 chr9 116444068 116444213 -7631959 - MTC LTR MaLR -262 159 3 9 1473 497 182 0 0 chr9 116444215 116444314 -7631858 - MTC-int LTR MaLR 0 1258 1160 9 1473 916 246 62 0 chr9 116444315 116444539 -7631633 + Lx6 LINE L1 7197 7434 -26 9 1473 405 0 0 0 chr9 116444548 116444593 -7631579 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1473 3929 178 154 41 chr9 116444594 116445623 -7630549 - MTC-int LTR MaLR -112 1146 1 9 1473 2390 137 67 27 chr9 116445623 116446028 -7630144 - MTC LTR MaLR 0 421 1 9 1473 318 67 0 0 chr9 116446132 116446177 -7629995 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1473 204 40 0 0 chr9 116446182 116446207 -7629965 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1473 217 211 58 0 chr9 116446891 116446943 -7629229 + CT-rich Low_complexity Low_complexity 2 56 0 9 1473 808 229 16 42 chr9 116446948 116447139 -7629033 + RLTR20B1 LTR ERVK 369 554 -9 9 1473 951 57 21 14 chr9 116447377 116447520 -7628652 + (TTTC)n Simple_repeat Simple_repeat 2 145 0 9 1473 809 183 7 7 chr9 116447520 116447663 -7628509 - B1_Mur1 SINE Alu -6 143 1 9 1473 671 237 0 0 chr9 116448763 116448902 -7627270 + B1_Mur2 SINE Alu 2 140 -9 9 1473 306 0 0 0 chr9 116448903 116448937 -7627235 + (CCAA)n Simple_repeat Simple_repeat 3 36 0 9 1473 577 226 89 21 chr9 116449392 116449582 -7626590 + ORR1D2 LTR MaLR 168 370 0 9 1473 252 353 65 55 chr9 116449624 116449673 -7626499 + B4A SINE B4 34 115 -177 9 1473 257 325 12 36 chr9 116449673 116449756 -7626416 + PB1D7 SINE Alu 1 81 -39 9 1473 252 353 65 55 chr9 116449756 116449825 -7626347 + B4A SINE B4 116 236 -56 9 1473 500 307 17 65 chr9 116450001 116450231 -7625941 + RLTR26 LTR ERVK 191 409 -233 9 1473 223 310 0 17 chr9 116450574 116450633 -7625539 + RSINE1 SINE B4 91 148 -17 9 1473 333 68 0 0 chr9 116450642 116450686 -7625486 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1473 198 0 0 0 chr9 116450686 116450707 -7625465 + (GA)n Simple_repeat Simple_repeat 2 23 0 9 1473 585 263 109 38 chr9 116451414 116451679 -7624493 - B4A SINE B4 -8 284 1 9 1473 254 279 48 9 chr9 116452194 116452299 -7623873 + ORR1E LTR MaLR 1 109 -250 9 1473 3675 117 18 106 chr9 116452472 116453239 -7622933 - RMER6A LTR ERVK 0 756 57 9 1473 488 322 87 54 chr9 116454323 116454862 -7621310 + HAL1 LINE L1 1864 2420 -87 9 1473 313 288 50 0 chr9 116455212 116455387 -7620785 + L1M2 LINE L1 5298 5486 -811 9 1473 686 252 32 6 chr9 116455392 116455548 -7620624 + B3A SINE B2 1 160 -38 9 1473 405 0 0 0 chr9 116455555 116455600 -7620572 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1473 10327 167 73 34 chr9 116455882 116456748 -7619424 + L1_Mur3 LINE L1 2136 2995 -2885 9 1473 579 29 0 0 chr9 116456748 116456817 -7619355 + (GA)n Simple_repeat Simple_repeat 2 70 0 9 1473 10327 167 73 34 chr9 116456817 116457119 -7619053 + L1_Mur3 LINE L1 2996 3302 -2578 9 1473 1546 53 0 5 chr9 116457119 116457310 -7618862 - B2_Mm1t SINE B2 -2 191 2 9 1473 10327 167 73 34 chr9 116457310 116458385 -7617787 + L1_Mur3 LINE L1 3303 4467 -1413 9 1473 260 53 26 0 chr9 116458508 116458546 -7617626 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1473 591 242 111 11 chr9 116458651 116458933 -7617239 - RMER20B LTR ERVK 0 516 210 1 1473 473 0 18 0 chr9 116459536 116459593 -7616579 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1473 793 144 0 14 chr9 116460699 116460847 -7615325 + CT-rich Low_complexity Low_complexity 4 149 0 1 1473 1103 51 5 43 chr9 116460853 116461039 -7615133 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1 1473 780 157 26 0 chr9 116461039 116461067 -7615105 + polypyrimidine Low_complexity Low_complexity 133 160 0 1 1473 1206 68 6 17 chr9 116461067 116461247 -7614925 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1473 780 157 26 0 chr9 116461247 116461371 -7614801 + polypyrimidine Low_complexity Low_complexity 5 132 0 1 1473 467 294 140 19 chr9 116461382 116461639 -7614533 - B4 SINE B4 -2 290 3 1 1473 462 250 78 35 chr9 116462532 116462673 -7613499 - B1F SINE Alu -2 147 1 1 1473 33 73 0 0 chr9 116463557 116463625 -7612547 + AT_rich Low_complexity Low_complexity 1 68 0 1 1473 871 271 62 18 chr9 116464303 116464577 -7611595 - B4A SINE B4 -1 291 6 1 1473 242 118 0 38 chr9 116466155 116466208 -7609964 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1 1473 324 0 0 0 chr9 116466211 116466247 -7609925 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1473 2147 167 62 17 chr9 116466482 116466885 -7609287 - MTC LTR MaLR 0 421 1 1 1473 451 196 0 76 chr9 116467084 116467189 -7608983 + Lx8 LINE L1 7243 7339 -134 1 1473 666 247 6 29 chr9 116467193 116467378 -7608794 + B3 SINE B2 27 194 -1 1 1473 21 57 0 0 chr9 116467549 116467584 -7608588 + AT_rich Low_complexity Low_complexity 1 35 0 1 1473 3501 35 0 0 chr9 116468229 116468625 -7607547 - MTA_Mm LTR MaLR 0 396 1 1 1473 381 211 26 16 chr9 116468740 116468855 -7607317 + PB1D10 SINE Alu 10 117 0 1 1473 22998 48 11 2 chr9 116469876 116472729 -7603443 + L1Md_F2 LINE L1 2708 5586 -297 1 1473 8223 40 6 8 chr9 116472729 116473727 -7602445 + L1Md_F2 LINE L1 5587 6582 0 1 1473 313 224 53 0 chr9 116474092 116474168 -7602004 + B4A SINE B4 2 81 -211 1 1473 819 131 0 0 chr9 116474369 116474506 -7601666 + (GA)n Simple_repeat Simple_repeat 2 138 0 1 1473 323 234 13 0 chr9 116474783 116474860 -7601312 + PB1D10 SINE Alu 14 91 -26 1 1473 901 223 54 5 chr9 116474861 116475082 -7601090 + MTE2b LTR MaLR 1 232 -147 1 1473 1881 147 23 23 chr9 116475105 116475459 -7600713 + ORR1B1 LTR MaLR 41 394 0 1 1473 298 318 27 0 chr9 116475459 116475565 -7600607 + MTE2b LTR MaLR 238 346 -33 1 1473 309 111 0 53 chr9 116476309 116476385 -7599787 + (TTA)n Simple_repeat Simple_repeat 3 74 0 1 1473 420 257 43 103 chr9 116477273 116477507 -7598665 + RMER2 LTR ERV1 348 567 0 1 1473 233 206 31 31 chr9 116477511 116477576 -7598596 - RLTR31_Mur LTR ERVK 0 553 489 1 1473 789 306 32 79 chr9 116477659 116478127 -7598045 - RLTR17 LTR ERVK -122 570 125 1 1473 432 266 67 39 chr9 116478722 116479007 -7597165 - RLTR15 LTR ERVK -18 341 49 1 1473 288 0 0 0 chr9 116479007 116479039 -7597133 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1473 237 269 158 34 chr9 116479207 116479353 -7596819 + B3A SINE B2 35 198 0 1 1473 432 285 68 22 chr9 116479795 116479964 -7596208 + B3A SINE B2 1 182 -34 1 1473 183 156 0 0 chr9 116480149 116480181 -7595991 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 1 1473 228 239 104 0 chr9 116480215 116480282 -7595890 + MLT1A1 LTR MaLR 303 376 -32 1 1473 477 0 0 0 chr9 116481527 116481580 -7594592 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1473 279 0 0 0 chr9 116481580 116481610 -7594562 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1473 451 209 105 35 chr9 116481612 116481726 -7594446 - B3A SINE B2 -76 122 1 1 1473 201 74 0 0 chr9 116483639 116483666 -7592506 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 1473 192 77 0 0 chr9 116486397 116486423 -7589749 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1473 221 95 31 31 chr9 116486646 116486711 -7589461 + T-rich Low_complexity Low_complexity 2 66 0 1 1473 186 103 0 0 chr9 116487113 116487142 -7589030 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1473 27 0 0 0 chr9 116487324 116487351 -7588821 + AT_rich Low_complexity Low_complexity 1 27 0 1 1473 200 213 0 0 chr9 116487664 116487711 -7588461 + A-rich Low_complexity Low_complexity 1 47 0 1 1473 337 316 25 57 chr9 116488060 116488175 -7587997 - B3 SINE B2 -1 215 101 1 1473 2165 151 60 14 chr9 116488175 116488593 -7587579 + Lx LINE L1 6218 6654 0 1 1473 337 274 108 93 chr9 116488593 116488675 -7587497 - B3 SINE B2 -98 100 14 1 1473 25 75 0 0 chr9 116489260 116489313 -7586859 + AT_rich Low_complexity Low_complexity 1 53 0 1 1473 201 256 0 0 chr9 116489394 116489437 -7586735 + GA-rich Low_complexity Low_complexity 1 43 0 1 1473 507 300 78 49 chr9 116489511 116489795 -7586377 - B4A SINE B4 0 292 1 1 1473 610 268 82 12 chr9 116489982 116490152 -7586020 - B3A SINE B2 -16 182 1 1 1473 233 224 0 0 chr9 116490631 116490680 -7585492 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 1 1473 216 0 0 0 chr9 116490768 116490792 -7585380 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1473 260 230 13 26 chr9 116490800 116490876 -7585296 - L1M2 LINE L1 -472 5828 5754 1 1473 212 216 78 0 chr9 116492578 116492629 -7583543 - B1_Mus2 SINE Alu -80 67 13 1 1473 627 125 0 0 chr9 116492660 116492764 -7583408 + (TTCC)n Simple_repeat Simple_repeat 3 106 0 1 1473 305 119 0 33 chr9 116492830 116492891 -7583281 + GA-rich Low_complexity Low_complexity 2 60 0 1 1473 191 345 82 0 chr9 116494184 116494294 -7581878 + MER5B DNA MER1_type 6 124 -54 1 1473 1197 231 73 22 chr9 116494463 116494821 -7581351 + MTE2b LTR MaLR 1 376 -3 1 1473 291 280 0 0 chr9 116495736 116495811 -7580361 + ID4 SINE ID 5 79 -4 1 1473 553 256 41 12 chr9 116495927 116496097 -7580075 + B3A SINE B2 3 177 -21 1 1473 543 43 0 0 chr9 116496127 116496197 -7579975 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1473 961 85 24 18 chr9 116496370 116496538 -7579634 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 1 1473 540 301 55 15 chr9 116497312 116497511 -7578661 + B4A SINE B4 23 229 -63 1 1473 511 227 270 0 chr9 116497517 116497639 -7578533 + B3 SINE B2 5 152 -64 1 1473 405 0 0 0 chr9 116497639 116497684 -7578488 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1473 511 227 270 0 chr9 116497684 116497724 -7578448 + B3 SINE B2 153 210 -6 1 1473 395 274 73 106 chr9 116497767 116497918 -7578254 + RSINE1 SINE B4 6 151 -14 1 1473 441 0 0 0 chr9 116497919 116497968 -7578204 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1473 455 293 19 39 chr9 116498280 116498436 -7577736 + B3A SINE B2 1 153 -45 1 1473 327 65 0 0 chr9 116498443 116498489 -7577683 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1473 505 252 43 14 chr9 116499348 116499489 -7576683 + B3 SINE B2 19 163 -53 1 1473 333 93 0 0 chr9 116499504 116499558 -7576614 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1473 489 340 49 38 chr9 116499664 116499951 -7576221 - B4 SINE B4 0 292 3 1 1473 438 268 124 23 chr9 116500528 116500746 -7575426 - B4A SINE B4 -46 246 7 1 1473 21 36 0 0 chr9 116500833 116500861 -7575311 + AT_rich Low_complexity Low_complexity 1 28 0 2 1473 496 278 103 0 chr9 116500899 116501025 -7575147 - RSINE1 SINE B4 -24 141 3 3 1473 732 240 22 16 chr9 116502041 116502223 -7573949 - B3A SINE B2 -6 192 10 4 1473 331 279 243 0 chr9 116502478 116502614 -7573558 - MTE2b LTR MaLR -151 228 60 5 1473 248 253 39 26 chr9 116502617 116502694 -7573478 - MTE2b LTR MaLR -283 96 19 5 1473 677 300 39 3 chr9 116502841 116503121 -7573051 + L1M5 LINE L1 3525 3825 -2321 6 1473 550 211 0 19 chr9 116503504 116503610 -7572562 - B3 SINE B2 -56 160 57 7 1473 24 85 0 0 chr9 116503656 116503715 -7572457 + AT_rich Low_complexity Low_complexity 1 59 0 8 1473 302 278 83 9 chr9 116503767 116503876 -7572296 + L1MD2 LINE L1 5879 5995 -364 9 1473 579 94 0 0 chr9 116504182 116504278 -7571894 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 1473 435 258 24 65 chr9 116504837 116505007 -7571165 + RSINE1 SINE B4 2 164 -1 1 1473 603 299 6 13 chr9 116505910 116506066 -7570106 + RSINE1 SINE B4 2 156 -9 1 1473 666 209 98 6 chr9 116506693 116506866 -7569306 + B3A SINE B2 1 189 -9 1 1473 303 28 0 0 chr9 116507917 116507953 -7568219 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1473 744 22 0 0 chr9 116507953 116508042 -7568130 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1473 520 320 0 0 chr9 116508108 116508255 -7567917 - B4 SINE B4 -144 148 2 1 1473 559 312 27 11 chr9 116509081 116509269 -7566903 + B4 SINE B4 102 292 0 1 1473 270 0 0 0 chr9 116509301 116509331 -7566841 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1473 1205 48 7 0 chr9 116510480 116510625 -7565547 + B1_Mm SINE Alu 1 146 -1 1 1473 219 109 21 21 chr9 116510625 116510672 -7565500 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 2 1473 849 161 0 27 chr9 116512229 116512414 -7563758 + GA-rich Low_complexity Low_complexity 1 180 0 2 1473 314 45 0 22 chr9 116512414 116512459 -7563713 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 2 1473 2028 201 80 12 chr9 116512477 116512976 -7563196 + RLTR12A LTR ERVK 2 534 -34 2 1473 387 277 18 9 chr9 116513025 116513138 -7563034 - PB1D10 SINE Alu -1 116 3 2 1473 373 325 44 19 chr9 116513484 116513644 -7562528 - MER5B DNA MER1_type -4 174 11 2 1473 872 253 25 60 chr9 116513675 116513990 -7562182 + ORR1D2 LTR MaLR 51 354 -16 2 1473 462 96 0 0 chr9 116514571 116514644 -7561528 + (TATG)n Simple_repeat Simple_repeat 4 76 0 2 1473 737 263 19 62 chr9 116514651 116514862 -7561310 - B3 SINE B2 -13 203 2 2 1473 273 378 33 0 chr9 116515492 116515643 -7560529 - MER5A DNA MER1_type -28 161 6 2 1473 405 0 0 0 chr9 116515672 116515717 -7560455 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1473 1244 232 150 6 chr9 116515717 116516064 -7560108 + MTD LTR MaLR 21 417 -2 3 1473 651 125 0 0 chr9 116516179 116516283 -7559889 + (GA)n Simple_repeat Simple_repeat 2 105 0 3 1473 441 54 0 0 chr9 116517410 116517466 -7558706 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1473 189 226 0 0 chr9 116517597 116517650 -7558522 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1473 469 208 6 6 chr9 116517666 116517840 -7558332 + (TG)n Simple_repeat Simple_repeat 1 174 0 3 1473 406 227 6 6 chr9 116517853 116518017 -7558155 + (TG)n Simple_repeat Simple_repeat 1 164 0 3 1473 430 323 7 95 chr9 116518017 116518164 -7558008 - RSINE1 SINE B4 0 165 32 3 1473 515 291 29 29 chr9 116518547 116518717 -7557455 + B4 SINE B4 8 177 -115 3 1473 227 143 20 20 chr9 116518725 116518787 -7557385 + (CAAA)n Simple_repeat Simple_repeat 1 62 0 3 1473 244 275 12 24 chr9 116519066 116519148 -7557024 + GA-rich Low_complexity Low_complexity 4 84 0 3 1473 1280 268 70 21 chr9 116520297 116520682 -7555490 + MTD LTR MaLR 1 404 -15 3 1473 180 0 0 0 chr9 116521655 116521675 -7554497 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1473 395 287 10 0 chr9 116521720 116521821 -7554351 + PB1D10 SINE Alu 13 114 -3 4 184 485 218 56 4 chr9 116522942 116523087 -7553085 - B3A SINE B2 -34 161 5 4 1474 494 196 71 14 chr9 116524334 116524474 -7551698 + Lx9 LINE L1 7495 7642 -2 4 1474 1410 56 0 0 chr9 116525311 116525491 -7550681 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1474 1290 75 0 0 chr9 116525509 116525790 -7550382 + (TG)n Simple_repeat Simple_repeat 1 281 0 4 1474 242 269 0 0 chr9 116525803 116525855 -7550317 - ID4_ SINE ID -14 69 18 4 1474 333 169 149 53 chr9 116526003 116526097 -7550075 + PB1D10 SINE Alu 15 117 0 4 1474 234 250 0 0 chr9 116527374 116527478 -7548694 + (TG)n Simple_repeat Simple_repeat 2 105 0 4 1474 374 198 35 6 chr9 116527557 116527730 -7548442 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1474 205 182 36 0 chr9 116527786 116527841 -7548331 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1474 901 269 17 44 chr9 116527876 116528172 -7548000 - B4 SINE B4 0 292 5 4 1474 234 297 125 29 chr9 116528380 116528484 -7547688 + B4 SINE B4 19 132 -160 5 1474 218 316 51 114 chr9 116528484 116528555 -7547617 + B3A SINE B2 19 182 -16 5 1474 357 136 0 0 chr9 116528558 116528624 -7547548 + (CATA)n Simple_repeat Simple_repeat 4 69 0 5 1474 201 147 0 0 chr9 116528682 116528716 -7547456 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 5 1474 213 258 61 0 chr9 116529652 116529718 -7546454 - B1F SINE Alu -12 137 68 5 1474 1224 252 51 0 chr9 116530221 116530515 -7545657 + Lx9 LINE L1 7117 7425 -219 5 1474 529 317 12 6 chr9 116531344 116531506 -7544666 + RSINE1 SINE B4 3 165 0 5 1474 213 175 0 0 chr9 116531509 116531549 -7544623 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1474 543 43 0 0 chr9 116532064 116532134 -7544038 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1474 502 229 144 8 chr9 116532138 116532270 -7543902 - B3A SINE B2 -48 150 1 5 1474 228 35 0 0 chr9 116532911 116532940 -7543232 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1474 216 67 0 0 chr9 116533247 116533277 -7542895 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1474 195 365 0 0 chr9 116533423 116533527 -7542645 - MIR SINE MIR -5 257 154 6 1474 286 267 202 53 chr9 116534817 116535059 -7541113 - B4A SINE B4 -14 278 1 6 1474 468 0 0 0 chr9 116535304 116535356 -7540816 + (ATGTG)n Simple_repeat Simple_repeat 3 54 0 6 1474 216 67 0 0 chr9 116535410 116535440 -7540732 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1474 488 246 58 17 chr9 116535440 116535560 -7540612 - B1_Mur1 SINE Alu -20 129 5 6 1474 1036 183 16 5 chr9 116538752 116538944 -7537228 - B3A SINE B2 0 198 5 6 1474 201 171 0 0 chr9 116539388 116539423 -7536749 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 6 1474 970 273 42 71 chr9 116540914 116541293 -7534879 + ORR1D2 LTR MaLR 3 370 0 6 1474 24 0 0 0 chr9 116543189 116543213 -7532959 + AT_rich Low_complexity Low_complexity 1 24 0 7 1474 1175 269 71 49 chr9 116544467 116544877 -7531295 + MTD LTR MaLR 1 419 0 7 1474 494 301 49 0 chr9 116546062 116546205 -7529967 - RSINE1 SINE B4 -13 152 3 7 1474 243 0 0 0 chr9 116547137 116547164 -7529008 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1474 366 164 0 52 chr9 116549155 116549232 -7526940 - B3 SINE B2 -140 76 4 7 1474 306 0 0 0 chr9 116549963 116549997 -7526175 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1474 309 169 0 15 chr9 116550025 116550091 -7526081 + ORR1D2 LTR MaLR 294 358 -12 7 1474 281 271 208 19 chr9 116550886 116551040 -7525132 + B3 SINE B2 6 188 -28 7 1474 855 201 0 0 chr9 116551401 116551580 -7524592 + (TA)n Simple_repeat Simple_repeat 2 180 0 7 1474 1216 289 83 12 chr9 116551890 116552398 -7523774 + L1_Rod LINE L1 4522 5065 -782 7 1474 1033 126 141 5 chr9 116552419 116552610 -7523562 - URR1B DNA MER1_type -7 218 2 8 1474 358 333 83 33 chr9 116552614 116552890 -7523282 - B4A SINE B4 0 292 3 8 1474 399 305 14 21 chr9 116552941 116553085 -7523087 - ID_B1 SINE B4 -9 215 73 8 1474 3520 15 8 0 chr9 116553104 116553497 -7522675 - MTA_Mm LTR MaLR 0 396 1 8 1474 755 287 14 19 chr9 116554002 116554215 -7521957 + B3 SINE B2 5 216 0 8 1474 185 0 40 0 chr9 116554218 116554243 -7521929 + (TAA)n Simple_repeat Simple_repeat 1 26 0 8 1474 511 261 20 61 chr9 116554457 116554653 -7521519 - B3A SINE B2 0 198 11 8 1474 414 57 0 0 chr9 116554930 116554983 -7521189 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1474 742 256 69 22 chr9 116555015 116555290 -7520882 - B4 SINE B4 -4 288 1 8 1474 495 33 0 0 chr9 116556160 116556221 -7519951 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1474 522 272 49 0 chr9 116556221 116556402 -7519770 - B4 SINE B4 -57 235 36 9 1474 693 265 20 0 chr9 116557345 116557452 -7518720 + B3A SINE B2 2 108 -90 9 1474 2296 152 220 6 chr9 116557452 116557934 -7518238 + RMER4B LTR ERVK 1 585 0 9 1474 693 265 20 0 chr9 116557934 116557977 -7518195 + B3A SINE B2 109 154 -44 9 1474 1290 58 0 0 chr9 116557980 116558240 -7517932 + (CA)n Simple_repeat Simple_repeat 1 260 0 9 1474 368 268 45 52 chr9 116559587 116559721 -7516451 + RSINE1 SINE B4 1 133 -32 9 1474 534 31 0 0 chr9 116559733 116559797 -7516375 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1474 900 200 43 19 chr9 116560599 116560808 -7515364 + B3 SINE B2 1 214 -2 9 1474 751 235 85 5 chr9 116561265 116561453 -7514719 + B3 SINE B2 1 203 -13 9 1474 21 0 0 0 chr9 116561460 116561481 -7514691 + AT_rich Low_complexity Low_complexity 1 21 0 9 1474 662 251 113 60 chr9 116561990 116562337 -7513835 - MTD LTR MaLR -15 404 6 9 1474 449 157 167 0 chr9 116563052 116563154 -7513018 + B1_Mur1 SINE Alu 26 144 -5 1 1474 393 22 0 0 chr9 116563162 116563208 -7512964 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1474 298 39 59 0 chr9 116563291 116563342 -7512830 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1474 248 233 67 0 chr9 116563881 116563941 -7512231 + MIRc SINE MIR 62 125 -143 1 1474 1260 281 29 26 chr9 116564321 116564695 -7511477 + MTE2b LTR MaLR 1 368 -2 1 1474 207 287 0 0 chr9 116564712 116564834 -7511338 + (CA)n Simple_repeat Simple_repeat 2 123 0 1 1474 2610 82 155 24 chr9 116564909 116565334 -7510838 + RLTR45 LTR ERVK 1 481 -1 1 1474 333 354 39 22 chr9 116566061 116566243 -7509929 + ORR1E LTR MaLR 69 253 -106 1 1474 316 224 119 30 chr9 116566264 116566365 -7509807 + ORR1E LTR MaLR 270 379 0 1 1474 28 0 0 0 chr9 116566602 116566630 -7509542 + AT_rich Low_complexity Low_complexity 1 28 0 1 1474 457 272 132 60 chr9 116566698 116566964 -7509208 - B4A SINE B4 -7 285 1 1 1474 357 24 0 0 chr9 116567456 116567498 -7508674 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1474 334 318 16 48 chr9 116568448 116568838 -7507334 - L1_Mm LINE L1 -4038 1809 1428 1 1474 225 119 0 0 chr9 116569647 116569689 -7506483 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 1 1474 387 0 0 0 chr9 116571316 116571359 -7504813 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1474 285 118 0 0 chr9 116571359 116571409 -7504763 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1474 234 204 20 0 chr9 116571409 116571458 -7504714 - B3A SINE B2 -148 50 1 1 1474 404 315 88 38 chr9 116571578 116571915 -7504257 - ORR1E LTR MaLR -2 377 1 1 1474 396 109 16 0 chr9 116572673 116572737 -7503435 - MTE2a LTR MaLR 0 379 315 1 1474 4586 34 0 0 chr9 116572776 116573305 -7502867 + L1Md_T LINE L1 5729 6257 -325 1 1474 2117 148 62 11 chr9 116573314 116573683 -7502489 + ORR1B1 LTR MaLR 5 392 -2 1 1474 947 267 41 99 chr9 116573683 116574018 -7502154 - MTE2a LTR MaLR -61 318 1 1 1474 180 219 0 0 chr9 116574403 116574444 -7501728 + CT-rich Low_complexity Low_complexity 3 43 0 1 1474 234 0 0 0 chr9 116574950 116574976 -7501196 + (CTAA)n Simple_repeat Simple_repeat 4 29 0 1 1474 51 0 0 0 chr9 116576133 116576184 -7499988 + AT_rich Low_complexity Low_complexity 1 51 0 1 1474 241 307 27 0 chr9 116576334 116576409 -7499763 - ID SINE ID -146 78 2 1 1474 303 213 53 0 chr9 116576440 116576515 -7499657 - B1F2 SINE Alu -67 82 4 1 1474 327 25 0 0 chr9 116576676 116576716 -7499456 + (CAA)n Simple_repeat Simple_repeat 2 41 0 1 1474 757 285 9 18 chr9 116576954 116577172 -7499000 + B3 SINE B2 1 216 0 1 1474 715 193 6 11 chr9 116577900 116578078 -7498094 + (TATG)n Simple_repeat Simple_repeat 3 179 0 1 1474 3167 65 8 0 chr9 116578372 116578769 -7497403 - MTB LTR MaLR 0 400 1 1 1474 7541 84 15 56 chr9 116578769 116579914 -7496258 - MTB-int LTR MaLR 0 1098 1 1 1474 2373 47 63 0 chr9 116579920 116580238 -7495934 - MTB LTR MaLR -8 338 1 1 1474 28 48 0 0 chr9 116580552 116580594 -7495578 + AT_rich Low_complexity Low_complexity 1 42 0 1 1474 1398 214 22 33 chr9 116580891 116581259 -7494913 + ORR1D1 LTR MaLR 7 370 -4 1 1474 453 239 56 82 chr9 116581504 116581736 -7494436 + RLTR42-int LTR ERVK 1175 1400 -4122 1 1474 1318 67 15 0 chr9 116582037 116582367 -7493805 + (TCTA)n Simple_repeat Simple_repeat 1 335 0 1 1474 467 328 12 75 chr9 116583879 116584245 -7491927 + MTEa LTR MaLR 1 332 -47 1 1474 532 291 91 60 chr9 116584660 116585035 -7491137 - MTD LTR MaLR -14 386 1 1 1474 495 48 0 0 chr9 116586003 116586065 -7490107 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1474 203 204 19 0 chr9 116586201 116586255 -7489917 + CT-rich Low_complexity Low_complexity 2 56 0 1 1474 207 0 0 0 chr9 116586873 116586896 -7489276 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1474 381 43 0 0 chr9 116587994 116588041 -7488131 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1474 228 184 0 0 chr9 116588119 116588168 -7488004 + T-rich Low_complexity Low_complexity 1 49 0 1 1474 645 217 179 0 chr9 116588168 116588352 -7487820 - B4 SINE B4 -69 223 7 1 1474 414 0 0 0 chr9 116589018 116589064 -7487108 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1474 252 0 0 0 chr9 116589442 116589470 -7486702 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1474 779 212 186 26 chr9 116590737 116590931 -7485241 + URR1A DNA MER1_type 1 225 -1 1 1474 750 268 20 30 chr9 116591732 116591932 -7484240 - B3A SINE B2 0 198 1 1 1474 407 308 105 26 chr9 116592074 116592428 -7483744 + L1ME1 LINE L1 5435 5817 -362 1 1474 586 265 131 22 chr9 116592463 116592737 -7483435 - MER2 DNA MER2_type -39 306 3 1 1474 346 335 48 5 chr9 116592766 116592976 -7483196 + L1ME1 LINE L1 5855 6073 -106 1 1474 195 184 0 0 chr9 116593050 116593088 -7483084 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1474 420 313 30 0 chr9 116593171 116593302 -7482870 - ID_B1 SINE B4 -3 221 87 1 1474 349 252 38 28 chr9 116593317 116593423 -7482749 - PB1D10 SINE Alu -7 110 4 1 1474 614 275 18 63 chr9 116593475 116593696 -7482476 - B3 SINE B2 -4 212 2 1 1474 480 18 0 0 chr9 116594378 116594435 -7481737 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1474 766 285 71 39 chr9 116595640 116595921 -7480251 + B4 SINE B4 3 292 0 1 1474 222 118 0 0 chr9 116595922 116595956 -7480216 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 1 1474 234 326 0 11 chr9 116595973 116596063 -7480109 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 1 1474 2798 144 90 0 chr9 116596180 116596608 -7479564 + RLTR20D LTR ERVK 1 475 -93 1 1474 348 24 0 0 chr9 116596608 116596649 -7479523 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1474 2798 144 90 0 chr9 116596649 116596741 -7479431 + RLTR20D LTR ERVK 476 567 -1 1 1474 548 199 81 0 chr9 116596918 116597054 -7479118 - B3 SINE B2 0 216 70 1 1474 335 247 6 0 chr9 116597100 116597258 -7478914 + (CA)n Simple_repeat Simple_repeat 2 160 0 1 1474 237 209 0 0 chr9 116597282 116597349 -7478823 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1474 336 318 112 58 chr9 116597726 116597986 -7478186 - B4 SINE B4 -18 274 1 1 1474 1445 44 44 0 chr9 116598883 116599065 -7477107 - B2_Mm2 SINE B2 -5 190 1 1 1474 1147 266 53 36 chr9 116599320 116599679 -7476493 - Lx8 LINE L1 -43 7430 7066 1 1474 391 308 65 84 chr9 116599680 116600034 -7476138 + MTEa LTR MaLR 1 367 -12 1 1474 544 272 30 12 chr9 116600392 116600556 -7475616 + B3A SINE B2 2 168 -30 1 1474 330 26 0 0 chr9 116600561 116600600 -7475572 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1474 185 247 12 0 chr9 116601321 116601402 -7474770 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1474 264 264 11 33 chr9 116601404 116601494 -7474678 - RSINE1 SINE B4 0 165 78 1 1474 468 0 0 0 chr9 116602222 116602274 -7473898 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1474 351 0 0 0 chr9 116602274 116602313 -7473859 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1474 843 246 78 19 chr9 116602358 116602615 -7473557 - B4 SINE B4 -18 274 3 1 1474 192 125 0 0 chr9 116602964 116602996 -7473176 + (TCCC)n Simple_repeat Simple_repeat 2 33 0 1 1474 1410 56 0 0 chr9 116602996 116603176 -7472996 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1474 797 180 16 0 chr9 116603190 116603318 -7472854 - B1_Mus2 SINE Alu -14 133 4 1 1474 25 65 0 0 chr9 116603789 116603835 -7472337 + AT_rich Low_complexity Low_complexity 1 46 0 1 1474 3237 63 2 0 chr9 116604455 116604854 -7471318 - MTB LTR MaLR 0 400 1 1 1474 276 286 57 9 chr9 116605703 116605809 -7470363 - MIRc SINE MIR -70 198 88 1 1474 1321 110 5 10 chr9 116605909 116606102 -7470070 - B2_Mm2 SINE B2 -3 192 1 1 1474 287 239 45 0 chr9 116608089 116608156 -7468016 - PB1D10 SINE Alu -2 115 46 1 1474 2935 45 61 5 chr9 116608423 116608798 -7467374 - MTA_Mm LTR MaLR 0 396 1 1 1474 7965 83 19 4 chr9 116608798 116609879 -7466293 - MTA_Mm-int LTR MaLR 0 1098 1 1 1474 2884 65 36 5 chr9 116609879 116610267 -7465905 - MTA_Mm LTR MaLR 0 400 1 1 1474 222 37 0 0 chr9 116611153 116611180 -7464992 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1474 599 242 137 18 chr9 116611180 116611348 -7464824 - B3 SINE B2 -28 188 1 1 1474 316 294 18 35 chr9 116611348 116611431 -7464741 + MTE2b LTR MaLR 279 359 -20 1 1474 400 262 28 77 chr9 116611483 116611665 -7464507 + MER104 DNA Tc2 1 173 -8 1 1474 279 54 0 0 chr9 116612085 116612122 -7464050 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1474 316 305 58 13 chr9 116613649 116613805 -7462367 + MER82 DNA MER2_type 24 186 -467 1 1474 442 208 118 0 chr9 116613809 116613924 -7462248 - B3A SINE B2 -48 150 2 1 1474 873 0 0 0 chr9 116613944 116614041 -7462131 + (TTC)n Simple_repeat Simple_repeat 3 99 0 1 1474 1090 117 0 11 chr9 116614041 116614222 -7461950 + (TCC)n Simple_repeat Simple_repeat 2 180 0 1 1474 363 247 0 34 chr9 116614224 116614312 -7461860 - ID_B1 SINE B4 -29 195 111 1 1474 247 253 13 26 chr9 116614301 116614378 -7461794 - B4 SINE B4 -215 77 2 1 1474 363 44 0 0 chr9 116614852 116614897 -7461275 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1474 266 270 0 0 chr9 116615595 116615658 -7460514 - ID_B1 SINE B4 -2 222 160 1 1474 315 283 17 109 chr9 116615652 116615771 -7460401 + B3A SINE B2 16 123 -75 1 1474 252 0 0 0 chr9 116615836 116615864 -7460308 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1474 618 14 0 0 chr9 116615864 116615934 -7460238 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1474 534 70 0 0 chr9 116617188 116617259 -7458913 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1474 333 0 0 0 chr9 116617278 116617315 -7458857 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1474 6318 183 50 27 chr9 116617437 116618745 -7457427 + Lx9 LINE L1 6306 7643 -1 1 1474 423 0 0 0 chr9 116619614 116619661 -7456511 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1474 336 249 33 39 chr9 116619661 116619777 -7456395 + (TCTCTG)n Simple_repeat Simple_repeat 1 115 0 1 1474 342 61 0 0 chr9 116619777 116619826 -7456346 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 1 1474 336 249 33 39 chr9 116619826 116619926 -7456246 + (TCTCTG)n Simple_repeat Simple_repeat 3 102 0 2 1474 249 236 6 17 chr9 116619952 116620133 -7456039 + (TCTG)n Simple_repeat Simple_repeat 1 179 0 2 1474 306 279 40 119 chr9 116620918 116621044 -7455128 + Charlie1a DNA MER1_type 1070 1185 -270 2 1474 286 229 36 0 chr9 116621072 116621155 -7455017 + Lx7 LINE L1 7611 7696 0 2 1474 250 152 34 0 chr9 116621965 116622024 -7454148 + CT-rich Low_complexity Low_complexity 2 62 0 2 1474 639 289 61 25 chr9 116622070 116622350 -7453822 - B4A SINE B4 0 292 3 2 1474 732 229 19 42 chr9 116623308 116623616 -7452556 + MTEb LTR MaLR 11 367 -12 2 1474 225 242 30 6 chr9 116624095 116624261 -7451911 + (TG)n Simple_repeat Simple_repeat 2 171 0 2 1474 288 198 16 43 chr9 116624312 116624497 -7451675 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1474 203 210 32 16 chr9 116624510 116624573 -7451599 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1474 286 368 80 13 chr9 116624636 116624862 -7451310 - B4A SINE B4 -50 242 2 2 1474 719 298 67 9 chr9 116625206 116625521 -7450651 + RMER5 LTR ERV1 191 523 -11 2 1474 329 62 0 20 chr9 116626536 116626585 -7449587 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 2 1474 1197 179 176 54 chr9 116626675 116626978 -7449194 + MTE2a LTR MaLR 1 346 -33 2 1474 258 32 0 0 chr9 116626978 116627009 -7449163 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1474 1197 179 176 54 chr9 116627009 116627041 -7449131 + MTE2a LTR MaLR 347 377 -2 2 1474 351 73 0 42 chr9 116627119 116627190 -7448982 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 2 1474 476 241 139 67 chr9 116627717 116627926 -7448246 - ID_B1 SINE B4 0 224 1 2 1474 450 264 126 21 chr9 116628144 116628334 -7447838 - B4A SINE B4 -75 217 8 2 1474 467 168 11 0 chr9 116629868 116629963 -7446209 + GA-rich Low_complexity Low_complexity 2 97 0 2 1474 396 0 0 0 chr9 116630475 116630519 -7445653 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1474 741 320 5 9 chr9 116631019 116631230 -7444942 + ID_B1 SINE B4 6 215 -9 2 1474 325 300 47 53 chr9 116631240 116631409 -7444763 + MER44D DNA MER2_type 73 240 -465 2 1474 393 250 122 23 chr9 116631907 116632047 -7444125 + RMER15 LTR ERVL 387 532 -43 2 1474 297 0 0 0 chr9 116632047 116632080 -7444092 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1474 393 250 122 23 chr9 116632080 116632111 -7444061 + RMER15 LTR ERVL 533 574 -1 2 1474 829 234 178 72 chr9 116632258 116632589 -7443583 + ORR1D2 LTR MaLR 5 370 0 2 1474 556 203 42 28 chr9 116633275 116633417 -7442755 - B1F SINE Alu -1 148 5 2 1474 351 278 32 65 chr9 116633440 116633563 -7442609 - RSINE1 SINE B4 -41 124 6 2 1474 231 36 0 0 chr9 116633578 116633606 -7442566 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1474 21 0 0 0 chr9 116634996 116635017 -7441155 + AT_rich Low_complexity Low_complexity 1 21 0 2 1474 838 279 68 22 chr9 116635081 116635359 -7440813 + B4 SINE B4 2 292 0 2 1474 201 311 14 0 chr9 116635363 116635392 -7440780 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1474 189 74 0 0 chr9 116635392 116635419 -7440753 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1474 201 311 14 0 chr9 116635419 116635463 -7440709 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1474 779 213 108 11 chr9 116635598 116635783 -7440389 + B3 SINE B2 1 203 -13 2 1474 207 0 0 0 chr9 116635801 116635824 -7440348 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1474 27 29 0 0 chr9 116636194 116636228 -7439944 + AT_rich Low_complexity Low_complexity 1 34 0 2 1474 773 234 0 48 chr9 116636266 116636473 -7439699 + B3A SINE B2 1 197 -1 2 1474 568 259 0 0 chr9 116637680 116637815 -7438357 - B3A SINE B2 -63 135 1 2 1474 269 51 26 0 chr9 116638394 116638433 -7437739 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1474 538 154 86 0 chr9 116638446 116638563 -7437609 - B3A SINE B2 -55 143 17 2 1474 510 17 0 0 chr9 116638581 116638640 -7437532 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1474 29 0 0 0 chr9 116639046 116639075 -7437097 + AT_rich Low_complexity Low_complexity 1 29 0 2 1474 662 286 31 9 chr9 116639300 116639522 -7436650 + B4A SINE B4 7 233 -59 2 1474 300 211 0 0 chr9 116639677 116639748 -7436424 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1474 22 0 0 0 chr9 116640168 116640190 -7435982 + AT_rich Low_complexity Low_complexity 1 22 0 2 1474 705 82 0 0 chr9 116640203 116640300 -7435872 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1474 302 246 31 0 chr9 116640303 116640368 -7435804 - B3 SINE B2 -66 150 84 2 1474 714 207 109 21 chr9 116640992 116641184 -7434988 + B3 SINE B2 2 210 -6 2 1474 338 277 0 11 chr9 116641747 116641761 -7434411 - RSINE1 SINE B4 -70 95 2 2 1474 591 62 0 0 chr9 116641761 116641842 -7434330 - B3 SINE B2 -135 81 1 2 1474 202 125 0 40 chr9 116642196 116642246 -7433926 + GA-rich Low_complexity Low_complexity 5 52 0 2 1474 459 0 0 0 chr9 116642964 116643015 -7433157 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1474 437 290 95 14 chr9 116643017 116643164 -7433008 - B3 SINE B2 -57 159 1 2 1474 213 121 0 0 chr9 116643539 116643572 -7432600 + (CAA)n Simple_repeat Simple_repeat 2 34 0 2 1474 206 222 22 0 chr9 116644723 116644768 -7431404 + GA-rich Low_complexity Low_complexity 1 46 0 2 1474 351 241 8 125 chr9 116644783 116644908 -7431264 - MTE2a LTR MaLR -65 314 205 2 1474 453 286 22 8 chr9 116644908 116645042 -7431130 + RSINE1 SINE B4 2 137 -28 2 1474 501 62 0 0 chr9 116645056 116645121 -7431051 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1474 733 216 29 63 chr9 116645137 116645344 -7430828 - MTE2a LTR MaLR -165 214 15 2 1474 228 350 0 0 chr9 116645606 116645686 -7430486 - ID4_ SINE ID -2 81 2 2 1474 615 198 0 0 chr9 116646026 116646249 -7429923 + (CA)n Simple_repeat Simple_repeat 1 223 0 2 1474 644 36 12 0 chr9 116646252 116646335 -7429837 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 1474 676 235 13 13 chr9 116647074 116647225 -7428947 - B3A SINE B2 -47 151 1 2 1474 958 158 17 0 chr9 116648017 116648194 -7427978 + ORR1C1 LTR MaLR 1 180 -198 2 1474 200 290 127 56 chr9 116648203 116648400 -7427772 + L2a LINE L2 3214 3424 -2 2 1474 317 295 175 23 chr9 116648813 116648990 -7427182 - B4 SINE B4 -78 214 11 2 1474 342 0 0 0 chr9 116650299 116650337 -7425835 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1474 4257 46 15 4 chr9 116650512 116651031 -7425141 - L1Md_F2 LINE L1 0 6582 6058 2 1474 251 314 0 34 chr9 116651328 116651417 -7424755 - MLT1D LTR MaLR -2 503 418 2 1474 454 311 15 0 chr9 116651715 116651850 -7424322 + ID_B1 SINE B4 82 218 -6 2 1474 490 267 116 28 chr9 116653236 116653417 -7422755 + B3A SINE B2 2 198 0 2 1475 321 311 27 2 chr9 116654166 116654288 -7421884 - B3A SINE B2 -25 191 70 2 1475 1235 175 105 18 chr9 116654475 116654760 -7421412 + RLTR11A LTR ERVK 1 310 -218 2 1475 520 113 20 10 chr9 116654758 116654856 -7421316 + RLTR11A LTR ERVK 429 527 0 2 1475 324 132 0 0 chr9 116655170 116655223 -7420949 + HAL1-3A_ME LINE L1 1960 2012 -846 2 1475 442 183 0 61 chr9 116655254 116655417 -7420755 + (CATATA)n Simple_repeat Simple_repeat 6 158 0 2 1475 579 225 0 22 chr9 116655465 116655647 -7420525 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 2 1475 628 198 143 6 chr9 116656142 116656310 -7419862 - B3A SINE B2 -6 192 2 2 1475 733 182 7 0 chr9 116657189 116657332 -7418840 - MTD LTR MaLR -275 144 1 2 1475 330 269 54 0 chr9 116657461 116657554 -7418618 + PB1D7 SINE Alu 1 98 -22 2 1475 252 77 0 0 chr9 116657876 116657915 -7418257 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1475 315 0 0 0 chr9 116658103 116658138 -7418034 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1475 423 0 0 0 chr9 116658857 116658904 -7417268 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1475 323 147 25 33 chr9 116658962 116659082 -7417090 + (TG)n Simple_repeat Simple_repeat 1 119 0 2 1475 327 45 0 0 chr9 116659106 116659150 -7417022 - HAL1-3A_ME LINE L1 -846 2012 1969 2 1475 697 250 0 14 chr9 116659443 116659589 -7416583 - B1F1 SINE Alu -5 144 1 2 1475 521 276 47 26 chr9 116660140 116660330 -7415842 + RMER15 LTR ERVL 364 557 -18 2 1475 580 306 21 5 chr9 116660467 116660661 -7415511 + B3A SINE B2 1 197 -1 2 1475 516 239 50 80 chr9 116660689 116660889 -7415283 + B3A SINE B2 4 197 -1 2 1475 943 226 49 0 chr9 116660912 116661116 -7415056 + B3 SINE B2 3 216 0 2 1475 608 285 28 23 chr9 116661713 116661726 -7414446 - B4A SINE B4 -3 289 277 2 1475 561 64 0 0 chr9 116661726 116661804 -7414368 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1475 608 285 28 23 chr9 116661804 116661966 -7414206 - B4A SINE B4 -16 276 114 2 1475 534 124 0 0 chr9 116662007 116662096 -7414076 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1475 457 258 98 71 chr9 116662469 116662694 -7413478 + B4A SINE B4 3 233 -59 2 1475 300 53 0 0 chr9 116662736 116662774 -7413398 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1475 1165 86 6 11 chr9 116662865 116663042 -7413130 + (GGAGA)n Simple_repeat Simple_repeat 2 177 0 2 1475 278 231 76 63 chr9 116664413 116664582 -7411590 - RSINE1 SINE B4 0 292 79 2 1475 305 290 25 99 chr9 116664613 116664774 -7411398 - B4 SINE B4 -136 156 8 2 1475 635 197 24 0 chr9 116665148 116665275 -7410897 + ID_B1 SINE B4 91 220 -4 2 1475 300 316 62 62 chr9 116665377 116665556 -7410616 - MTE2a LTR MaLR -182 197 19 2 1475 262 295 0 78 chr9 116666947 116667050 -7409122 - MLT1E2 LTR MaLR -445 182 88 2 1475 240 200 51 6 chr9 116667337 116667493 -7408679 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 2 1475 193 163 45 23 chr9 116667547 116667635 -7408537 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 2 1475 530 114 37 22 chr9 116667741 116667876 -7408296 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 2 1475 223 155 86 0 chr9 116667908 116667966 -7408206 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 1475 365 147 73 7 chr9 116667984 116668121 -7408051 + (TAGA)n Simple_repeat Simple_repeat 1 146 0 2 1475 232 229 33 0 chr9 116668156 116668217 -7407955 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 1475 983 150 6 16 chr9 116668605 116668788 -7407384 + ORR1D1 LTR MaLR 1 181 -193 2 1475 377 139 65 0 chr9 116668791 116668899 -7407273 + CT-rich Low_complexity Low_complexity 2 116 0 2 1475 917 168 83 12 chr9 116668903 116669120 -7407052 + ORR1D1 LTR MaLR 149 384 0 2 1475 750 127 0 0 chr9 116670077 116670203 -7405969 + (TCCC)n Simple_repeat Simple_repeat 4 129 0 2 1475 239 260 13 27 chr9 116670204 116670279 -7405893 + CT-rich Low_complexity Low_complexity 1 74 0 3 1475 293 351 9 0 chr9 116670287 116670398 -7405774 - PB1D10 SINE Alu 0 117 6 3 1475 755 164 6 0 chr9 116671111 116671282 -7404890 + (TG)n Simple_repeat Simple_repeat 2 173 0 3 1475 189 232 0 0 chr9 116671282 116671351 -7404821 + GA-rich Low_complexity Low_complexity 2 70 0 3 1475 705 295 84 37 chr9 116671354 116671632 -7404540 + Lx9 LINE L1 6191 6622 -1022 3 1475 1632 274 14 2 chr9 116671772 116672186 -7403986 + Lx9 LINE L1 6604 7022 -622 3 1475 493 306 33 75 chr9 116672241 116672453 -7403719 - MTD LTR MaLR -216 203 1 3 1475 422 332 36 60 chr9 116672903 116673153 -7403019 + B4A SINE B4 1 244 -48 3 1475 811 255 39 0 chr9 116673995 116674203 -7401969 + B3 SINE B2 1 216 0 3 1475 482 162 0 0 chr9 116674246 116674326 -7401846 - B3A SINE B2 -118 80 1 3 1475 632 277 7 0 chr9 116674715 116674856 -7401316 + RSINE1 SINE B4 5 146 -19 3 1475 942 227 40 114 chr9 116675088 116675466 -7400706 - MTEb LTR MaLR 0 379 30 3 1475 536 261 188 13 chr9 116676501 116676730 -7399442 + MTD LTR MaLR 137 405 -14 3 1475 259 195 26 13 chr9 116676749 116676827 -7399345 + CT-rich Low_complexity Low_complexity 2 80 0 3 1475 734 213 155 21 chr9 116677302 116677489 -7398683 - B3 SINE B2 -4 212 1 3 1475 390 271 131 89 chr9 116677624 116677883 -7398289 + B4 SINE B4 2 271 -21 3 1475 381 43 0 0 chr9 116677913 116677960 -7398212 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1475 200 31 0 59 chr9 116678718 116678752 -7397420 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 3 1475 534 294 5 48 chr9 116679482 116679671 -7396501 - B3A SINE B2 -16 182 2 3 1475 560 40 0 13 chr9 116679927 116680003 -7396169 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1475 265 370 99 61 chr9 116680050 116680312 -7395860 - B4 SINE B4 -19 273 2 3 1475 22 70 0 0 chr9 116680480 116680523 -7395649 + AT_rich Low_complexity Low_complexity 1 43 0 3 1475 236 221 65 117 chr9 116680523 116680600 -7395572 - B3 SINE B2 -34 182 110 3 1475 215 135 27 0 chr9 116680737 116680774 -7395398 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1475 608 291 72 26 chr9 116680774 116681039 -7395133 - B4 SINE B4 -1 291 15 3 1475 441 0 0 0 chr9 116681323 116681372 -7394800 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1475 3458 71 13 4 chr9 116681558 116682008 -7394164 - L1Md_F2 LINE L1 -1 6581 6128 3 1475 2288 99 16 0 chr9 116682155 116682477 -7393695 - ORR1A2 LTR MaLR 0 327 1 3 1475 212 253 121 0 chr9 116682516 116682599 -7393573 + B4A SINE B4 1 93 -199 3 1475 266 322 55 2 chr9 116682823 116682924 -7393248 + B4A SINE B4 39 145 -147 3 1475 225 0 0 0 chr9 116682986 116683011 -7393161 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1475 509 199 24 0 chr9 116683118 116683284 -7392888 + (CA)n Simple_repeat Simple_repeat 2 171 0 3 1475 441 0 0 0 chr9 116684110 116684159 -7392013 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1475 21 0 0 0 chr9 116684839 116684860 -7391312 + AT_rich Low_complexity Low_complexity 1 21 0 3 1475 515 286 14 0 chr9 116684863 116685003 -7391169 + B1F SINE Alu 1 142 -7 3 1475 1356 83 0 4 chr9 116685008 116685275 -7390897 + (GGAA)n Simple_repeat Simple_repeat 1 265 0 3 1475 722 266 49 148 chr9 116685670 116686090 -7390082 + MTE2b LTR MaLR 13 392 -27 3 1475 267 31 0 0 chr9 116686354 116686386 -7389786 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1475 584 158 0 9 chr9 116686394 116686509 -7389663 + (TA)n Simple_repeat Simple_repeat 2 115 0 3 1475 645 321 30 88 chr9 116686923 116687319 -7388853 + MTEa LTR MaLR 2 374 -5 3 1475 216 0 0 0 chr9 116687828 116687852 -7388320 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1475 789 93 0 0 chr9 116687862 116687991 -7388181 + (GA)n Simple_repeat Simple_repeat 1 129 0 3 1475 602 195 188 6 chr9 116688755 116688925 -7387247 - ID_B1 SINE B4 -23 201 1 3 1475 225 271 0 67 chr9 116688881 116688956 -7387216 - ZP3AR Satellite Satellite -127 85 16 3 1475 718 174 7 0 chr9 116689550 116689851 -7386321 + (CA)n Simple_repeat Simple_repeat 1 303 0 3 1475 239 130 43 0 chr9 116690696 116690742 -7385430 + L1MA4A LINE L1 5728 5775 -522 3 1475 543 226 0 0 chr9 116690749 116690882 -7385290 + (TATATG)n Simple_repeat Simple_repeat 5 137 0 3 1475 180 0 0 0 chr9 116690992 116691012 -7385160 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1475 476 246 9 0 chr9 116691027 116691141 -7385031 + L1MA4A LINE L1 5816 5930 -373 3 1475 200 294 0 0 chr9 116691153 116691204 -7384968 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 3 1475 208 229 27 41 chr9 116691649 116691722 -7384450 - MIR SINE MIR -70 192 121 3 1475 345 244 218 30 chr9 116691883 116692048 -7384124 - B3A SINE B2 -1 197 2 3 1475 318 50 0 0 chr9 116692394 116692434 -7383738 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1475 206 179 0 49 chr9 116693608 116693649 -7382523 + (CATG)n Simple_repeat Simple_repeat 1 39 0 3 1475 901 245 24 24 chr9 116693666 116693913 -7382259 - B4 SINE B4 -44 248 2 3 1475 619 221 96 0 chr9 116693948 116694084 -7382088 + B1F1 SINE Alu 1 149 0 3 1475 835 277 21 35 chr9 116694343 116694627 -7381545 - B4A SINE B4 -8 284 5 3 1475 805 246 9 73 chr9 116694876 116695095 -7381077 + B3 SINE B2 1 205 -11 3 1475 978 244 66 15 chr9 116695897 116696171 -7380001 - B4A SINE B4 -4 288 1 3 1475 195 42 0 0 chr9 116696228 116696252 -7379920 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 3 1475 280 293 0 12 chr9 116696432 116696515 -7379657 - MIRc SINE MIR -123 145 64 3 1475 288 0 0 0 chr9 116697630 116697662 -7378510 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1475 1242 242 62 31 chr9 116697878 116698232 -7377940 - MTE2b LTR MaLR -2 377 13 3 1475 483 279 29 0 chr9 116698507 116698647 -7377525 + ORR1E LTR MaLR 46 189 -170 3 1475 401 223 0 35 chr9 116698647 116698791 -7377381 + CT-rich Low_complexity Low_complexity 4 142 0 3 1475 418 160 209 1 chr9 116698899 116698996 -7377176 - B1F2 SINE Alu -29 120 7 3 1475 771 230 47 51 chr9 116699054 116699269 -7376903 - B3 SINE B2 0 216 3 3 1475 697 284 11 0 chr9 116699445 116699621 -7376551 + B3A SINE B2 2 179 -19 3 1475 933 269 91 20 chr9 116700134 116700487 -7375685 - MTEb LTR MaLR 0 379 2 3 1475 3177 66 10 0 chr9 116700511 116700907 -7375265 - MTB LTR MaLR 0 400 1 3 1475 734 92 15 0 chr9 116701733 116701863 -7374309 + Lx2 LINE L1 6866 6997 0 3 1475 213 282 150 25 chr9 116701953 116702033 -7374139 + PB1 SINE Alu 36 125 -2 3 1475 350 351 22 31 chr9 116702049 116702278 -7373894 - Charlie1b DNA MER1_type -274 249 23 3 1475 269 305 0 12 chr9 116702333 116702416 -7373756 + MTD LTR MaLR 32 113 -306 3 1475 294 333 26 39 chr9 116702392 116702548 -7373624 - RSINE1 SINE B4 -9 156 3 3 1475 323 164 41 0 chr9 116702680 116702753 -7373419 - Lx2 LINE L1 -56 6941 6866 3 1475 35 24 0 0 chr9 116702857 116702899 -7373273 + AT_rich Low_complexity Low_complexity 1 42 0 3 1475 371 256 22 22 chr9 116703707 116703843 -7372329 - MLT1D LTR MaLR -81 424 289 3 1475 486 0 0 0 chr9 116705358 116705412 -7370760 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1475 1294 199 63 16 chr9 116705489 116705806 -7370366 + MTE2a LTR MaLR 1 332 -47 3 1475 282 325 0 0 chr9 116705805 116705882 -7370290 + B1F SINE Alu 64 140 -9 3 1475 350 324 114 42 chr9 116706536 116706729 -7369443 + ID_B1 SINE B4 18 224 0 3 1475 755 252 59 20 chr9 116706741 116706943 -7369229 + B3 SINE B2 2 211 -5 3 1475 222 280 0 0 chr9 116707064 116707139 -7369033 + (TATG)n Simple_repeat Simple_repeat 4 78 0 3 1475 485 298 17 106 chr9 116707146 116707326 -7368846 - RSINE1 SINE B4 0 165 2 3 1475 1056 111 0 0 chr9 116707652 116707832 -7368340 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1475 245 215 51 0 chr9 116708889 116708968 -7367204 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 3 1475 604 24 24 0 chr9 116708995 116709077 -7367095 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 3 1475 845 80 160 0 chr9 116709431 116709556 -7366616 + B1_Mus2 SINE Alu 2 146 -1 3 1475 309 250 90 64 chr9 116710310 116710438 -7365734 + B3A SINE B2 3 129 -66 3 1475 351 0 0 0 chr9 116710438 116710477 -7365695 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1475 289 250 90 64 chr9 116710477 116710536 -7365636 + B2_Mm2 SINE B2 130 195 0 3 1475 660 93 0 0 chr9 116711357 116711454 -7364718 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 1475 687 263 79 42 chr9 116712305 116712519 -7363653 + B4A SINE B4 3 224 -68 3 1475 240 111 0 0 chr9 116712531 116712567 -7363605 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1475 402 21 0 0 chr9 116712812 116712859 -7363313 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1475 641 221 7 21 chr9 116713309 116713452 -7362720 - ID_B1 SINE B4 -7 217 77 3 1475 244 218 65 54 chr9 116713684 116713776 -7362396 - MER5C1 DNA MER1_type -99 164 72 3 1475 669 276 96 4 chr9 116714032 116714261 -7361911 + B4A SINE B4 2 251 -41 3 1475 437 183 121 91 chr9 116715458 116715590 -7360582 - B4 SINE B4 0 292 157 3 1475 673 268 10 25 chr9 116715616 116715815 -7360357 - B3A SINE B2 -2 196 1 3 1475 36 23 0 0 chr9 116715822 116715865 -7360307 + AT_rich Low_complexity Low_complexity 1 43 0 3 1475 183 42 0 0 chr9 116715946 116715970 -7360202 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1475 236 231 13 0 chr9 116717296 116717374 -7358798 + CT-rich Low_complexity Low_complexity 2 80 0 3 1475 321 26 0 0 chr9 116717936 116717974 -7358198 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 4 1475 1157 100 29 34 chr9 116717974 116718176 -7357996 - Lx3_Mus LINE L1 -15 6994 6793 4 1475 357 24 0 0 chr9 116718207 116718249 -7357923 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1475 323 247 167 11 chr9 116718307 116718397 -7357775 - B4 SINE B4 -28 264 161 4 1475 267 293 0 0 chr9 116718571 116718646 -7357526 - ID4 SINE ID -3 80 6 4 1475 639 245 63 83 chr9 116718670 116718924 -7357248 + Lx8 LINE L1 7225 7473 0 4 1475 809 232 63 87 chr9 116719124 116719547 -7356625 - MTD LTR MaLR -14 405 20 4 1475 295 341 29 54 chr9 116719682 116719859 -7356313 + L1MD3 LINE L1 7507 7675 -320 4 1475 303 85 0 0 chr9 116719859 116719906 -7356266 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 4 1475 295 341 29 54 chr9 116719906 116720004 -7356168 + L1MD3 LINE L1 7676 7775 -220 4 1475 856 302 48 35 chr9 116722154 116722549 -7353623 + RMER5 LTR ERV1 130 529 -5 4 1475 216 0 0 0 chr9 116722656 116722680 -7353492 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1475 330 216 19 154 chr9 116723339 116723443 -7352729 + 5S rRNA rRNA 1 90 -31 4 1475 872 268 63 49 chr9 116724827 116725113 -7351059 + B4 SINE B4 3 292 0 4 1475 428 93 13 0 chr9 116725115 116725190 -7350982 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1475 321 0 0 0 chr9 116725257 116725295 -7350877 + HAL1-3A_ME LINE L1 1973 2010 -848 4 1475 350 229 65 19 chr9 116725607 116725714 -7350458 + MTC LTR MaLR 9 120 -301 4 1475 1591 153 80 3 chr9 116725862 116726151 -7350021 + MTC LTR MaLR 111 421 0 4 1475 1734 152 39 60 chr9 116726416 116726752 -7349420 + ORR1A4 LTR MaLR 1 329 0 4 1475 370 342 8 24 chr9 116726902 116727025 -7349147 + RSINE1 SINE B4 27 147 -18 4 1475 327 235 0 0 chr9 116727768 116727866 -7348306 + (CCCA)n Simple_repeat Simple_repeat 3 100 0 4 1475 319 338 20 0 chr9 116727869 116728017 -7348155 + (TCCA)n Simple_repeat Simple_repeat 3 153 0 4 1475 914 173 3 3 chr9 116728021 116728317 -7347855 + GA-rich Low_complexity Low_complexity 1 296 0 4 1475 380 263 112 17 chr9 116729261 116729439 -7346733 + MLT1B LTR MaLR 194 388 -2 4 1475 5957 88 37 2 chr9 116729536 116730372 -7345800 + Lx2 LINE L1 6125 6989 -8 4 1475 772 218 137 0 chr9 116731333 116731530 -7344642 - ID_B1 SINE B4 0 224 1 4 1475 321 239 20 28 chr9 116732201 116732311 -7343861 - PB1D10 SINE Alu -26 123 16 4 1475 747 339 139 12 chr9 116732524 116733029 -7343143 - Tigger7 DNA MER2_type -1894 597 29 4 1475 530 306 69 80 chr9 116733352 116733526 -7342646 + ID_B1 SINE B4 69 244 -48 4 1475 296 238 133 16 chr9 116733532 116733660 -7342512 + MER5A DNA MER1_type 40 182 -7 4 1475 191 98 0 24 chr9 116733965 116733996 -7342176 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1475 189 107 0 0 chr9 116733996 116734024 -7342148 + (CCA)n Simple_repeat Simple_repeat 1 28 0 4 1475 191 98 0 24 chr9 116734024 116734034 -7342138 + (CAAAA)n Simple_repeat Simple_repeat 1 10 0 4 1475 2396 154 97 40 chr9 116734218 116734329 -7341843 - RMER4B LTR ERVK 0 585 470 4 1475 2184 139 54 34 chr9 116734329 116734715 -7341457 + ORR1B1 LTR MaLR 1 394 0 4 1475 2396 154 97 40 chr9 116734715 116735109 -7341063 - RMER4B LTR ERVK -116 469 52 4 1475 804 145 19 0 chr9 116735110 116735269 -7340903 + CT-rich Low_complexity Low_complexity 1 162 0 4 1475 809 230 9 79 chr9 116735359 116735586 -7340586 + B3 SINE B2 6 216 0 4 1475 30 45 0 0 chr9 116735612 116735656 -7340516 + AT_rich Low_complexity Low_complexity 1 44 0 4 1475 331 36 17 52 chr9 116735782 116735840 -7340332 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1475 255 103 0 0 chr9 116735949 116735988 -7340184 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1475 275 348 44 24 chr9 116736024 116736230 -7339942 - MIRc SINE MIR -1 267 58 4 1475 344 276 19 72 chr9 116736261 116736468 -7339704 - MER113 DNA MER1_type -2 519 324 4 1475 431 266 153 54 chr9 116736681 116736847 -7339325 - B4 SINE B4 -20 272 76 4 1475 1720 212 27 6 chr9 116736847 116737213 -7338959 + ORR1D1 LTR MaLR 1 374 0 4 1475 431 266 153 54 chr9 116737213 116737288 -7338884 - B4 SINE B4 -217 75 7 4 1475 312 278 139 0 chr9 116738063 116738178 -7337994 - B1F SINE Alu -5 144 14 4 1475 301 364 87 0 chr9 116738178 116738264 -7337908 - ID_B1 SINE B4 0 219 1 4 1475 566 262 130 8 chr9 116739481 116739720 -7336452 + L1MA6 LINE L1 5657 5924 -376 4 1475 456 248 58 45 chr9 116739764 116739920 -7336252 + RSINE1 SINE B4 3 160 -5 4 1475 245 291 60 0 chr9 116739921 116740038 -7336134 + L1MA6 LINE L1 5938 6061 -239 4 1475 376 294 35 15 chr9 116740108 116740308 -7335864 + L1MA6 LINE L1 6033 6236 -64 4 1475 333 190 10 20 chr9 116741115 116741217 -7334955 + GA-rich Low_complexity Low_complexity 3 103 0 4 1475 728 195 6 0 chr9 116741243 116741402 -7334770 + GA-rich Low_complexity Low_complexity 1 160 0 4 1475 1498 18 3 7 chr9 116741402 116741687 -7334485 + (GAA)n Simple_repeat Simple_repeat 1 284 0 4 1475 814 142 7 7 chr9 116741691 116741826 -7334346 + B1_Mus2 SINE Alu 7 141 -6 4 1475 304 276 92 58 chr9 116742393 116742566 -7333606 - MIRb SINE MIR -34 234 56 4 1475 579 229 0 0 chr9 116743241 116743416 -7332756 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 1475 489 215 0 0 chr9 116743440 116743584 -7332588 + (TG)n Simple_repeat Simple_repeat 1 144 0 4 1475 180 241 0 0 chr9 116743614 116743672 -7332500 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1475 254 337 55 11 chr9 116745401 116745584 -7330588 + L1MC4 LINE L1 7025 7215 -827 4 1475 396 265 94 0 chr9 116745614 116745731 -7330441 + ID_B1 SINE B4 87 214 -10 4 1475 309 155 0 0 chr9 116745853 116745911 -7330261 + GA-rich Low_complexity Low_complexity 1 58 0 4 1475 183 100 0 0 chr9 116745915 116745945 -7330227 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 4 1475 433 260 39 0 chr9 116746001 116746105 -7330067 + B3 SINE B2 103 210 -6 4 1475 345 315 110 22 chr9 116746131 116746531 -7329641 + L1MC4 LINE L1 7241 7675 -367 4 1475 342 229 6 0 chr9 116746561 116746746 -7329426 + (TG)n Simple_repeat Simple_repeat 1 186 0 4 1475 209 11 0 158 chr9 116746795 116746909 -7329263 + (CTGTG)n Simple_repeat Simple_repeat 5 100 0 4 1475 453 193 0 0 chr9 116746910 116747060 -7329112 + (TG)n Simple_repeat Simple_repeat 1 150 0 4 1475 639 249 0 0 chr9 116747109 116747422 -7328750 + (TCTCTG)n Simple_repeat Simple_repeat 1 313 0 4 1475 259 299 42 48 chr9 116747320 116747485 -7328687 + SUBTEL_sa Satellite Satellite 8 171 -3 4 1475 428 274 16 68 chr9 116747504 116747696 -7328476 - B3A SINE B2 -16 182 1 4 1475 245 252 201 54 chr9 116747773 116747866 -7328306 + L1MC4 LINE L1 7755 7876 -166 4 1475 252 0 0 0 chr9 116747866 116747894 -7328278 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1475 245 252 201 54 chr9 116747894 116748039 -7328133 + L1MC4 LINE L1 7877 8027 -15 4 1475 672 24 0 0 chr9 116748566 116748648 -7327524 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 1475 270 333 10 10 chr9 116748700 116748803 -7327369 + MER20 DNA MER1_type 12 114 -105 4 1475 319 132 0 0 chr9 116748898 116748951 -7327221 - HAL1-3A_ME LINE L1 -830 2028 1976 4 1475 246 260 0 0 chr9 116748954 116749054 -7327118 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 1475 660 239 0 0 chr9 116749082 116749360 -7326812 + (TG)n Simple_repeat Simple_repeat 1 278 0 4 1475 636 235 0 0 chr9 116749388 116749630 -7326542 + (TG)n Simple_repeat Simple_repeat 1 242 0 4 1475 364 317 86 46 chr9 116750322 116750474 -7325698 - RSINE1 SINE B4 -5 160 3 4 1475 393 268 61 75 chr9 116750514 116750728 -7325444 - ID_B1 SINE B4 -9 215 5 4 1475 186 43 0 0 chr9 116750990 116751013 -7325159 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1475 1146 312 54 27 chr9 116751062 116751506 -7324666 + Lx8 LINE L1 6590 7045 -428 4 1475 1765 227 71 22 chr9 116751745 116752250 -7323922 - RCHARR1 DNA MER1_type 0 974 445 4 1475 357 125 0 0 chr9 116752274 116752330 -7323842 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 4 1475 899 285 41 35 chr9 116752438 116752780 -7323392 - ORR1E LTR MaLR -15 344 1 4 1475 717 185 0 0 chr9 116752866 116753044 -7323128 + (TGG)n Simple_repeat Simple_repeat 3 180 0 4 1475 315 0 0 0 chr9 116754334 116754369 -7321803 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1475 707 187 45 45 chr9 116754373 116754530 -7321642 - B3A SINE B2 -41 157 1 4 1475 222 91 0 0 chr9 116755301 116755334 -7320838 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1475 359 239 225 12 chr9 116755359 116755528 -7320644 - ID_B1 SINE B4 -19 205 1 4 1475 584 308 56 32 chr9 116755859 116756144 -7320028 - MLT2B2 LTR ERVL -205 310 19 4 1475 244 310 77 20 chr9 116756609 116756780 -7319392 + MIR3 SINE MIR 2 179 -29 4 1475 225 195 0 0 chr9 116757210 116757251 -7318921 - L1MD2 LINE L1 -6454 93 53 4 1475 607 247 46 23 chr9 116758068 116758242 -7317930 - B3A SINE B2 -16 182 5 4 1475 1197 247 36 88 chr9 116758441 116758827 -7317345 - ORR1D2 LTR MaLR 0 370 5 4 1475 896 196 0 71 chr9 116759043 116759241 -7316931 - MTD LTR MaLR 0 419 236 4 1475 427 274 28 0 chr9 116759234 116759340 -7316832 - B3A SINE B2 -83 115 7 4 1475 1300 175 73 8 chr9 116760519 116760778 -7315394 - MTC LTR MaLR 0 421 146 4 1475 1627 127 93 7 chr9 116760778 116761079 -7315093 + IAPEY3_LTR LTR ERVK 1 327 -5 4 1475 640 154 96 16 chr9 116761082 116761207 -7314965 - MTC LTR MaLR -270 151 17 4 1475 21 36 0 0 chr9 116761597 116761625 -7314547 + AT_rich Low_complexity Low_complexity 1 28 0 4 1475 518 165 0 10 chr9 116762502 116762606 -7313566 + GA-rich Low_complexity Low_complexity 3 105 0 4 1475 1052 90 0 46 chr9 116762872 116763024 -7313148 - B1_Mus2 SINE Alu 0 147 3 4 1475 365 177 62 10 chr9 116763087 116763184 -7312988 - Lx4B LINE L1 -23 7035 6934 4 1475 1736 148 0 17 chr9 116763197 116763492 -7312680 + Lx4B LINE L1 6491 6780 -278 4 1475 432 311 23 8 chr9 116763532 116763665 -7312507 + RSINE1 SINE B4 3 137 -28 4 1475 423 0 0 0 chr9 116763669 116763716 -7312456 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1475 830 232 77 10 chr9 116763890 116764086 -7312086 + B3 SINE B2 2 210 -6 4 1475 507 288 8 8 chr9 116764576 116764709 -7311463 + B3A SINE B2 2 134 -64 4 1475 450 65 0 0 chr9 116764709 116764771 -7311401 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1475 23 0 0 0 chr9 116764771 116764794 -7311378 + AT_rich Low_complexity Low_complexity 1 23 0 4 1475 765 33 0 0 chr9 116764879 116764971 -7311201 + (TC)n Simple_repeat Simple_repeat 1 92 0 5 1475 439 281 73 27 chr9 116766032 116766182 -7309990 + B4A SINE B4 1 157 -135 5 1475 489 80 0 0 chr9 116766211 116766286 -7309886 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 1475 423 38 0 0 chr9 116766286 116766339 -7309833 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1475 487 239 50 7 chr9 116766356 116766495 -7309677 - B3A SINE B2 -38 160 16 5 1475 350 284 321 32 chr9 116766545 116766763 -7309409 + B4A SINE B4 4 284 -8 5 1475 327 25 0 0 chr9 116767234 116767274 -7308898 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1475 411 119 0 0 chr9 116767632 116767699 -7308473 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1475 2340 253 81 40 chr9 116767725 116768634 -7307538 + RCHARR1 DNA MER1_type 3 949 -25 5 1475 210 105 0 0 chr9 116769469 116769507 -7306665 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 5 1475 504 342 0 35 chr9 116769507 116769707 -7306465 - B3A SINE B2 -4 194 2 5 1475 471 264 0 0 chr9 116770594 116770761 -7305411 + (CA)n Simple_repeat Simple_repeat 2 168 0 5 1475 729 232 0 63 chr9 116770793 116770968 -7305204 + RSINE1 SINE B4 2 165 0 5 1475 234 0 0 0 chr9 116771196 116771222 -7304950 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1475 216 0 0 0 chr9 116771825 116771849 -7304323 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1475 346 271 213 22 chr9 116772172 116772308 -7303864 - RSINE1 SINE B4 -2 163 2 5 1475 741 260 22 52 chr9 116772340 116772571 -7303601 + ID_B1 SINE B4 1 224 0 5 1475 494 203 0 8 chr9 116773292 116773411 -7302761 + CT-rich Low_complexity Low_complexity 5 122 0 5 1475 714 329 31 31 chr9 116773448 116773556 -7302616 - B4A SINE B4 -6 286 177 5 1475 288 0 0 0 chr9 116773556 116773588 -7302584 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1475 714 329 31 31 chr9 116773588 116773765 -7302407 - B4A SINE B4 -116 176 2 5 1475 557 249 46 96 chr9 116774037 116774317 -7301855 + MTEa LTR MaLR 6 271 -108 5 1475 205 283 163 0 chr9 116774542 116774634 -7301538 - MIR SINE MIR -85 177 71 5 1475 227 31 0 30 chr9 116774999 116775032 -7301140 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1475 881 262 19 0 chr9 116777584 116777790 -7298382 - B3 SINE B2 -5 211 2 5 1475 324 67 50 0 chr9 116777863 116777923 -7298249 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1475 187 114 45 0 chr9 116777932 116777976 -7298196 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1475 747 182 0 0 chr9 116778130 116778300 -7297872 + GA-rich Low_complexity Low_complexity 2 171 0 5 1475 367 336 0 81 chr9 116778528 116778677 -7297495 + B4A SINE B4 8 144 -148 5 1475 600 14 0 0 chr9 116778777 116778846 -7297326 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1475 2404 41 3 7 chr9 116779412 116779708 -7296464 + L1_Mus1 LINE L1 6273 6567 0 5 1475 32 67 0 0 chr9 116779710 116779770 -7296402 + AT_rich Low_complexity Low_complexity 1 60 0 5 1475 1408 89 5 5 chr9 116779838 116780030 -7296142 - B2_Mm2 SINE B2 -3 192 1 5 1475 567 294 17 22 chr9 116780147 116780328 -7295844 - B3A SINE B2 -17 181 2 5 1475 1235 234 72 6 chr9 116780683 116781018 -7295154 + MTE2a LTR MaLR 1 357 -22 5 1475 381 293 32 16 chr9 116781625 116781750 -7294422 + RSINE1 SINE B4 3 129 -36 5 1475 354 61 0 0 chr9 116781750 116781799 -7294373 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 5 1475 306 0 0 0 chr9 116781801 116781835 -7294337 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1475 387 0 0 0 chr9 116781835 116781877 -7294295 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1475 630 122 0 0 chr9 116782492 116782590 -7293582 + (CGTG)n Simple_repeat Simple_repeat 2 99 0 5 1475 295 230 36 0 chr9 116783438 116783577 -7292595 + CT-rich Low_complexity Low_complexity 2 145 0 5 1475 672 268 42 16 chr9 116783805 116783998 -7292174 - B3 SINE B2 -18 198 1 5 1475 323 229 40 34 chr9 116784751 116784900 -7291272 + L1ME2z LINE L1 6139 6288 -156 5 1476 414 268 134 0 chr9 116785672 116785799 -7290373 + RSINE1 SINE B4 9 152 -13 5 1476 441 0 0 0 chr9 116785989 116786038 -7290134 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1476 23 33 0 0 chr9 116786360 116786390 -7289782 + AT_rich Low_complexity Low_complexity 1 30 0 5 1476 286 181 95 12 chr9 116786586 116786638 -7289534 + B3A SINE B2 108 160 -38 5 1476 216 0 0 0 chr9 116786638 116786662 -7289510 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1476 286 181 95 12 chr9 116786662 116786693 -7289479 + B3A SINE B2 161 198 0 5 1476 522 242 53 35 chr9 116786797 116786968 -7289204 + RMER1C Other Other 1169 1342 0 5 1476 309 309 19 9 chr9 116786986 116787094 -7289078 - MER5A DNA MER1_type -65 124 16 5 1476 1688 243 84 16 chr9 116787979 116788464 -7287708 + RLTR12B LTR ERVK 1 518 -10 5 1476 225 333 79 36 chr9 116789532 116789672 -7286500 - RMER20B LTR ERVK -7 509 364 5 1476 386 287 24 8 chr9 116789899 116790022 -7286150 - RMER20B LTR ERVK -502 125 1 5 1476 377 268 62 0 chr9 116790583 116790695 -7285477 + RSINE1 SINE B4 3 121 -44 5 1476 486 0 0 0 chr9 116790725 116790779 -7285393 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1476 228 194 41 14 chr9 116790801 116790874 -7285298 - RLTR40 LTR ERVK -159 658 584 5 1476 1027 227 152 23 chr9 116792176 116792519 -7283653 + MTD LTR MaLR 18 404 -15 5 1476 252 143 0 0 chr9 116792542 116792584 -7283588 + B3 SINE B2 3 44 -172 5 1476 218 164 36 0 chr9 116792720 116792775 -7283397 + A-rich Low_complexity Low_complexity 1 57 0 5 1476 240 130 0 0 chr9 116793272 116793318 -7282854 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1476 635 349 29 16 chr9 116793349 116793515 -7282657 - B4A SINE B4 -2 290 122 5 1476 380 55 18 0 chr9 116793515 116793570 -7282602 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1476 635 347 28 12 chr9 116793570 116793692 -7282480 - B4A SINE B4 -171 121 2 5 1476 217 213 63 32 chr9 116794559 116794622 -7281550 - L2 LINE L2 -510 2909 2845 5 1476 1233 251 58 28 chr9 116795751 116795925 -7280247 + MTE2b LTR MaLR 1 188 -191 5 1476 4443 170 41 68 chr9 116795925 116796851 -7279321 + RMER19B LTR ERVK 1 901 -1 5 1476 1233 251 58 28 chr9 116796851 116797036 -7279136 + MTE2b LTR MaLR 189 371 -8 5 1476 222 156 0 0 chr9 116797573 116797618 -7278554 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 5 1476 722 271 141 27 chr9 116797780 116798042 -7278130 + B4 SINE B4 1 292 0 5 1476 400 288 31 31 chr9 116799160 116799275 -7276897 - B3A SINE B2 -79 116 2 5 1476 221 136 45 0 chr9 116799357 116799401 -7276771 + A-rich Low_complexity Low_complexity 4 49 0 5 1476 303 197 26 13 chr9 116800095 116800172 -7276000 + L1M4c LINE L1 1 78 -6306 5 1476 201 39 0 0 chr9 116800316 116800342 -7275830 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1476 801 259 148 30 chr9 116800487 116800825 -7275347 + MTEa LTR MaLR 2 379 0 5 1476 526 244 8 25 chr9 116801673 116801795 -7274377 + RSINE1 SINE B4 2 121 -44 5 1476 650 290 23 0 chr9 116802444 116802620 -7273552 + B3A SINE B2 1 180 -18 5 1476 270 263 15 8 chr9 116802637 116802771 -7273401 + (TA)n Simple_repeat Simple_repeat 1 135 0 5 1476 437 205 0 9 chr9 116802801 116802914 -7273258 + (CA)n Simple_repeat Simple_repeat 2 113 0 5 1476 601 235 44 65 chr9 116802989 116803289 -7272883 - L1MA4 LINE L1 -1552 5921 5625 5 1476 668 200 22 121 chr9 116803990 116804172 -7272000 - RSINE1 SINE B4 0 165 2 5 1476 221 402 0 0 chr9 116804217 116804344 -7271828 - MIRb SINE MIR -78 190 64 5 1476 2119 131 15 9 chr9 116805415 116805739 -7270433 + ORR1A2 LTR MaLR 2 327 0 5 1476 400 276 97 8 chr9 116805752 116805876 -7270296 + B1F SINE Alu 5 139 -10 5 1476 203 61 0 29 chr9 116806287 116806321 -7269851 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5 1476 593 284 166 33 chr9 116806569 116806929 -7269243 + MTD LTR MaLR 1 379 0 5 1476 210 222 0 0 chr9 116807661 116807706 -7268466 + MIRm SINE MIR 109 153 -123 5 1476 253 309 12 12 chr9 116808129 116808211 -7267961 + Tigger9a DNA Tigger 650 731 -1 5 1476 345 326 85 5 chr9 116808453 116808641 -7267531 + MLT1F2 LTR MaLR 25 227 -333 5 1476 269 325 35 53 chr9 116808759 116808928 -7267244 + MLT1F2 LTR MaLR 395 560 0 5 1476 706 81 18 0 chr9 116809176 116809287 -7266885 + (TCTA)n Simple_repeat Simple_repeat 1 113 0 5 1476 736 199 15 0 chr9 116809308 116809444 -7266728 - B1_Mur1 SINE Alu -8 141 4 5 1476 570 149 24 12 chr9 116810456 116810626 -7265546 + (CAGAGA)n Simple_repeat Simple_repeat 4 175 0 5 1476 292 249 94 98 chr9 116811189 116811465 -7264707 - RMER10A LTR ERVL 0 442 168 5 1476 391 226 66 38 chr9 116811712 116811818 -7264354 + PB1D7 SINE Alu 3 111 -9 5 1476 22 0 0 0 chr9 116811937 116811959 -7264213 + AT_rich Low_complexity Low_complexity 1 22 0 5 1476 571 267 51 82 chr9 116811959 116812155 -7264017 - B3A SINE B2 -7 191 2 5 1476 710 267 19 135 chr9 116813115 116813440 -7262732 - B4 SINE B4 -3 289 3 5 1476 234 0 0 0 chr9 116813597 116813623 -7262549 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1476 403 261 29 22 chr9 116813780 116813917 -7262255 + B1F1 SINE Alu 10 147 -2 5 1476 243 0 0 0 chr9 116815085 116815112 -7261060 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1476 361 248 30 67 chr9 116815584 116815718 -7260454 + RMER30 DNA MER1_type 8 136 -66 5 1476 296 345 17 11 chr9 116815966 116816145 -7260027 + L1MA5 LINE L1 5729 5908 -392 5 1476 822 262 22 5 chr9 116816147 116816331 -7259841 + B3 SINE B2 3 189 -27 5 1476 327 130 0 0 chr9 116816509 116816563 -7259609 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1476 673 298 83 20 chr9 116816610 116816863 -7259309 + B4A SINE B4 1 269 -23 5 1476 515 72 0 67 chr9 116816890 116817009 -7259163 + (CAGAGA)n Simple_repeat Simple_repeat 2 112 0 6 1476 219 212 0 43 chr9 116817476 116817545 -7258627 + ID4_ SINE ID 7 72 -11 6 1476 858 221 53 10 chr9 116817656 116817862 -7258310 + B3 SINE B2 2 216 0 6 1476 369 0 0 0 chr9 116818523 116818564 -7257608 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1476 706 302 102 8 chr9 116819382 116819636 -7256536 + B4 SINE B4 11 288 -4 6 1476 287 277 19 6 chr9 116819640 116819800 -7256372 + (CA)n Simple_repeat Simple_repeat 1 162 0 6 1476 906 244 33 9 chr9 116820237 116820448 -7255724 + B3 SINE B2 1 216 0 6 1476 347 0 0 23 chr9 116820463 116820507 -7255665 + (TAA)n Simple_repeat Simple_repeat 3 45 0 6 1476 230 0 33 0 chr9 116821683 116821713 -7254459 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1476 564 29 0 0 chr9 116822846 116822916 -7253256 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 6 1476 377 223 18 88 chr9 116822976 116823089 -7253083 + MT2B LTR ERVL 154 258 -343 6 1476 718 170 27 34 chr9 116822990 116823136 -7253036 + B1_Mur4 SINE Alu 6 150 0 6 1476 236 148 37 0 chr9 116823137 116823191 -7252981 + A-rich Low_complexity Low_complexity 1 56 0 6 1476 1044 229 69 18 chr9 116823440 116823716 -7252456 + B4 SINE B4 2 291 -1 6 1476 496 308 41 0 chr9 116823762 116823908 -7252264 + ID_B1 SINE B4 14 165 -59 6 1476 1121 246 77 23 chr9 116824334 116824683 -7251489 - ORR1D2 LTR MaLR 0 370 3 6 1476 262 303 41 82 chr9 116825390 116825417 -7250755 - B2_Mm2 SINE B2 -4 191 164 6 1476 315 71 0 0 chr9 116825417 116825459 -7250713 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1476 458 303 41 82 chr9 116825459 116825625 -7250547 - B3A SINE B2 -22 176 6 6 1476 492 218 27 0 chr9 116825636 116825746 -7250426 - B1F SINE Alu -36 113 1 6 1476 667 206 60 96 chr9 116826353 116826552 -7249620 + B3A SINE B2 1 192 -6 6 1476 525 259 107 0 chr9 116826943 116827074 -7249098 - RSINE1 SINE B4 -18 147 3 6 1476 405 267 297 41 chr9 116827762 116827981 -7248191 + B4 SINE B4 2 276 -16 6 1476 752 98 30 0 chr9 116827998 116828131 -7248041 + (CA)n Simple_repeat Simple_repeat 2 138 0 6 1476 486 182 22 43 chr9 116828160 116828344 -7247828 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1476 438 20 0 0 chr9 116829939 116829990 -7246182 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1476 370 18 70 0 chr9 116831022 116831079 -7245093 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 6 1476 1134 145 5 16 chr9 116831154 116831343 -7244829 - Lx2B LINE L1 -221 6779 6593 6 1476 310 258 8 40 chr9 116831340 116831465 -7244707 + Lx2B LINE L1 6853 6973 -27 6 1476 203 0 0 36 chr9 116831466 116831494 -7244678 + (TAA)n Simple_repeat Simple_repeat 1 27 0 6 1476 222 118 0 0 chr9 116831584 116831618 -7244554 + (TTA)n Simple_repeat Simple_repeat 1 34 0 6 1476 425 34 17 0 chr9 116831618 116831677 -7244495 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1476 465 252 17 155 chr9 116832108 116832282 -7243890 + RSINE1 SINE B4 9 158 -7 6 1476 857 286 27 38 chr9 116833608 116833870 -7242302 - B4 SINE B4 -28 264 6 6 1476 817 256 14 14 chr9 116833902 116834112 -7242060 + B3 SINE B2 1 210 -6 6 1476 341 301 25 70 chr9 116834152 116834309 -7241863 + RSINE1 SINE B4 16 165 0 6 1476 558 43 0 0 chr9 116834317 116834386 -7241786 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 6 1476 189 0 0 0 chr9 116834543 116834564 -7241608 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1476 1089 261 47 39 chr9 116834752 116835114 -7241058 - ORR1D2 LTR MaLR 0 370 6 6 1476 791 269 28 21 chr9 116835731 116836019 -7240153 - B4 SINE B4 -2 290 1 6 1476 273 304 80 9 chr9 116836023 116836136 -7240036 - B1F2 SINE Alu -6 143 23 6 1476 1260 231 25 9 chr9 116836303 116836626 -7239546 + MT2A LTR ERVL 166 493 -40 6 1476 207 267 0 0 chr9 116837463 116837508 -7238664 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1476 452 262 43 58 chr9 116837510 116837648 -7238524 - RSINE1 SINE B4 -3 162 27 6 1476 808 73 32 0 chr9 116837829 116837952 -7238220 + (TTCTCC)n Simple_repeat Simple_repeat 3 129 0 6 1476 208 250 0 0 chr9 116838159 116838207 -7237965 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 6 1476 252 278 64 34 chr9 116838216 116838359 -7237813 + B4A SINE B4 33 185 -107 6 1476 197 211 0 17 chr9 116838482 116838540 -7237632 + CT-rich Low_complexity Low_complexity 4 60 0 6 1476 444 304 122 52 chr9 116838893 116838970 -7237202 - B4A SINE B4 -2 290 223 6 1476 216 0 0 0 chr9 116838970 116838994 -7237178 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 1476 444 304 122 52 chr9 116838994 116839187 -7236985 - B4A SINE B4 -70 222 3 6 1476 491 290 92 62 chr9 116840125 116840473 -7235699 + MTB_Mm LTR MaLR 14 377 -2 6 1476 198 136 0 0 chr9 116840592 116840636 -7235536 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1476 3233 126 41 19 chr9 116841169 116841703 -7234469 - Lx2B LINE L1 0 7000 6455 6 1476 968 264 153 0 chr9 116841842 116842149 -7234023 + MTEa LTR MaLR 26 379 0 6 1476 364 297 21 35 chr9 116842970 116843096 -7233076 + RSINE1 SINE B4 2 127 -38 6 1476 384 22 0 0 chr9 116843096 116843141 -7233031 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1476 364 297 21 35 chr9 116843141 116843157 -7233015 + RSINE1 SINE B4 128 142 -23 6 1476 720 119 0 78 chr9 116843146 116843274 -7232898 - B1_Mur4 SINE Alu -30 120 3 6 1476 390 210 0 173 chr9 116843274 116843311 -7232861 - MT2B LTR ERVL -457 144 134 6 1476 309 260 105 88 chr9 116843416 116843530 -7232642 - RSINE1 SINE B4 -35 130 15 6 1476 505 254 36 78 chr9 116843601 116843793 -7232379 - B3A SINE B2 -1 197 14 6 1476 295 275 33 11 chr9 116843904 116843996 -7232176 - RMER30 DNA MER1_type -14 188 95 6 1476 296 262 25 0 chr9 116843923 116844003 -7232169 + Charlie12 DNA MER1_type 34 115 -2758 6 1476 317 281 21 36 chr9 116844788 116844928 -7231244 + CT-rich Low_complexity Low_complexity 2 139 0 6 1476 603 40 0 0 chr9 116844929 116845003 -7231169 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1476 512 246 18 0 chr9 116845016 116845126 -7231046 - B3A SINE B2 -83 115 4 6 1476 421 225 102 96 chr9 116845352 116845383 -7230789 - B2_Mm2 SINE B2 -7 188 159 6 1476 252 0 0 0 chr9 116845383 116845411 -7230761 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1476 697 225 102 96 chr9 116845411 116845566 -7230606 - B3A SINE B2 -38 160 1 6 1476 1297 267 39 0 chr9 116845575 116845912 -7230260 - ORR1D1 LTR MaLR 0 374 25 6 1476 228 67 0 0 chr9 116846292 116846322 -7229850 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 6 1476 463 223 0 0 chr9 116846326 116846420 -7229752 - ID_B1 SINE B4 -8 216 123 6 1476 1091 217 134 14 chr9 116846475 116846825 -7229347 - MTD LTR MaLR -27 392 1 6 1476 237 83 0 0 chr9 116846995 116847031 -7229141 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1476 21 36 0 0 chr9 116847863 116847891 -7228281 + AT_rich Low_complexity Low_complexity 1 28 0 6 1476 985 210 53 5 chr9 116848113 116848319 -7227853 - B3 SINE B2 0 216 1 6 1476 258 32 0 0 chr9 116848346 116848377 -7227795 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1476 1007 270 61 23 chr9 116848722 116849067 -7227105 - MTEa LTR MaLR 0 379 22 6 1476 639 244 17 6 chr9 116849531 116849712 -7226460 + MER5C DNA MER1_type 87 269 -44 6 1476 797 300 17 104 chr9 116849772 116850185 -7225987 - MTE2a LTR MaLR 0 379 3 6 1476 432 0 0 0 chr9 116850296 116850344 -7225828 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1476 1137 198 88 146 chr9 116850867 116851264 -7224908 + ORR1D1 LTR MaLR 1 374 0 6 1476 805 188 36 0 chr9 116851419 116851584 -7224588 + B3A SINE B2 2 172 -26 6 1476 370 197 8 8 chr9 116851609 116851727 -7224445 + (CA)n Simple_repeat Simple_repeat 1 118 0 6 1476 426 292 0 26 chr9 116851753 116851869 -7224303 - PB1D7 SINE Alu -7 113 1 6 1476 247 49 49 0 chr9 116851883 116851924 -7224248 + (ATTG)n Simple_repeat Simple_repeat 4 46 0 6 1476 565 293 38 0 chr9 116852094 116852251 -7223921 - RSINE1 SINE B4 0 165 3 6 1476 345 331 15 0 chr9 116853207 116853340 -7222832 + Charlie22a DNA MER1_type 265 399 -92 6 1476 512 279 188 47 chr9 116853560 116853890 -7222282 - ORR1E LTR MaLR -2 377 1 6 1476 504 270 36 36 chr9 116855675 116855871 -7220301 + RCHARR1 DNA MER1_type 779 974 0 6 1476 585 261 44 28 chr9 116856243 116856424 -7219748 + B3A SINE B2 5 188 -10 6 1476 414 0 0 0 chr9 116856443 116856489 -7219683 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1476 344 338 83 32 chr9 116856636 116856914 -7219258 + B4A SINE B4 1 292 0 6 1476 393 22 0 0 chr9 116856917 116856963 -7219209 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1476 24 0 0 0 chr9 116857020 116857044 -7219128 + AT_rich Low_complexity Low_complexity 1 24 0 6 1476 382 320 112 33 chr9 116858015 116858167 -7218005 + B4A SINE B4 21 184 -108 6 1476 423 0 0 0 chr9 116858193 116858240 -7217932 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 1476 229 211 0 38 chr9 116858249 116858328 -7217844 + GA-rich Low_complexity Low_complexity 2 77 0 6 1476 229 278 0 0 chr9 116858438 116858492 -7217680 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1476 324 70 0 0 chr9 116858613 116858656 -7217516 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1476 517 233 7 50 chr9 116859354 116859494 -7216678 + B4A SINE B4 143 276 -16 6 1476 468 0 0 0 chr9 116859734 116859786 -7216386 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1476 346 233 0 65 chr9 116860166 116860258 -7215914 + PB1D10 SINE Alu 21 106 -11 6 1476 955 238 19 5 chr9 116860987 116861198 -7214974 - B3 SINE B2 0 216 3 6 1476 271 255 29 39 chr9 116861237 116861252 -7214920 - B3A SINE B2 -97 101 1 7 1476 361 221 0 11 chr9 116861252 116861339 -7214833 - RSINE1 SINE B4 -78 87 2 7 1476 867 215 14 58 chr9 116862287 116862494 -7213678 + B3A SINE B2 1 198 0 7 1476 1095 173 55 0 chr9 116862869 116863071 -7213101 - B3 SINE B2 0 216 4 7 1476 607 247 142 21 chr9 116864157 116864466 -7211706 + ORR1D2 LTR MaLR 8 370 -4 7 1476 216 0 0 0 chr9 116864650 116864674 -7211498 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 7 1476 246 32 0 0 chr9 116864674 116864704 -7211468 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1476 571 246 20 98 chr9 116864721 116864924 -7211248 - B3A SINE B2 -11 187 1 7 1476 393 22 0 0 chr9 116865543 116865589 -7210583 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1476 240 164 47 19 chr9 116865713 116865819 -7210353 + (TCTA)n Simple_repeat Simple_repeat 2 110 0 7 1476 292 259 26 43 chr9 116865946 116866063 -7210109 + (TATG)n Simple_repeat Simple_repeat 1 115 0 7 1476 296 239 15 0 chr9 116865960 116866027 -7210145 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1476 336 125 0 0 chr9 116866247 116866311 -7209861 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1476 644 191 84 7 chr9 116866330 116866472 -7209700 - B3A SINE B2 -45 153 1 7 1476 693 278 11 6 chr9 116866539 116866720 -7209452 - B3A SINE B2 -16 182 1 7 1476 221 244 0 0 chr9 116867485 116867526 -7208646 + polypyrimidine Low_complexity Low_complexity 3 43 0 7 1476 801 189 7 7 chr9 116867526 116867675 -7208497 - B1_Mur1 SINE Alu 0 149 1 7 1476 1420 269 19 8 chr9 116869076 116869451 -7206721 + MTE2a LTR MaLR 1 379 0 7 1476 485 315 0 14 chr9 116869815 116869963 -7206209 + ID_B1 SINE B4 78 223 -1 7 1476 1025 232 22 22 chr9 116870017 116870374 -7205798 + ORR1E LTR MaLR 7 357 -13 7 1476 619 208 12 6 chr9 116870441 116870601 -7205571 + (CATATA)n Simple_repeat Simple_repeat 5 165 0 7 1476 339 165 0 34 chr9 116870600 116870688 -7205484 + (TG)n Simple_repeat Simple_repeat 2 86 0 7 1476 232 310 0 11 chr9 116871250 116871338 -7204834 - MIRb SINE MIR -133 135 49 7 1476 695 282 93 106 chr9 116872216 116872593 -7203579 + MTE2a LTR MaLR 1 372 -7 7 1476 250 260 0 49 chr9 116873082 116873163 -7203009 + (TATG)n Simple_repeat Simple_repeat 2 78 0 7 1476 735 324 14 5 chr9 116873241 116873464 -7202708 - B4 SINE B4 -60 232 8 7 1476 324 0 0 0 chr9 116873510 116873546 -7202626 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1476 529 224 148 20 chr9 116873836 116874046 -7202126 - ORR1E LTR MaLR -7 372 118 7 1476 289 237 13 26 chr9 116874095 116874173 -7201999 + RLTR16 LTR ERVK 40 116 -389 7 1476 414 0 0 0 chr9 116874173 116874219 -7201953 + (GGA)n Simple_repeat Simple_repeat 3 48 0 7 1476 858 173 0 0 chr9 116875494 116875743 -7200429 + (TG)n Simple_repeat Simple_repeat 1 249 0 7 1476 239 242 0 43 chr9 116876853 116876922 -7199250 + (TATG)n Simple_repeat Simple_repeat 3 68 0 7 1476 569 305 142 0 chr9 116877411 116877650 -7198522 + B4A SINE B4 2 274 -18 7 1476 312 70 0 0 chr9 116877694 116877737 -7198435 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1476 378 234 83 18 chr9 116878156 116878265 -7197907 - RSINE1 SINE B4 -42 123 8 7 1476 420 20 0 0 chr9 116878400 116878449 -7197723 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1476 321 26 0 0 chr9 116880402 116880440 -7195732 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 1476 750 267 21 45 chr9 116880518 116880761 -7195411 - B4A SINE B4 -55 237 1 7 1476 239 0 32 0 chr9 116881266 116881297 -7194875 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 7 1476 1176 57 0 0 chr9 116881719 116881860 -7194312 + B1_Mm SINE Alu 1 141 -6 7 1476 423 0 0 0 chr9 116881862 116881909 -7194263 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 7 1476 465 281 68 19 chr9 116882042 116882249 -7193923 - ID_B1 SINE B4 -4 220 4 7 1476 887 215 0 46 chr9 116883372 116883591 -7192581 - B3 SINE B2 -7 209 1 7 1476 282 266 25 31 chr9 116883705 116883734 -7192438 + (TA)n Simple_repeat Simple_repeat 2 29 0 7 1476 189 107 0 0 chr9 116883734 116883762 -7192410 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 7 1476 282 266 25 31 chr9 116883762 116883895 -7192277 + (TA)n Simple_repeat Simple_repeat 2 135 0 7 1476 217 325 35 107 chr9 116884857 116885026 -7191146 + B4A SINE B4 16 172 -120 7 1476 807 11 0 0 chr9 116885143 116885235 -7190937 + (TC)n Simple_repeat Simple_repeat 1 92 0 7 1476 234 0 0 0 chr9 116885235 116885260 -7190912 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1476 228 267 0 0 chr9 116885732 116885792 -7190380 + C-rich Low_complexity Low_complexity 1 60 0 7 1476 804 217 43 5 chr9 116885826 116886011 -7190161 - B3 SINE B2 -24 192 1 7 1476 661 234 7 7 chr9 116886713 116886868 -7189304 - B3A SINE B2 -43 155 1 7 1476 213 39 0 0 chr9 116887324 116887350 -7188822 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1476 1141 52 0 0 chr9 116887352 116887487 -7188685 - B1_Mus1 SINE Alu -13 135 1 7 1476 758 217 9 4 chr9 116887652 116888121 -7188051 + (TG)n Simple_repeat Simple_repeat 1 471 0 7 1476 715 278 74 53 chr9 116888127 116888412 -7187760 - B4A SINE B4 0 292 2 7 1476 420 261 0 0 chr9 116889207 116889364 -7186808 + (TG)n Simple_repeat Simple_repeat 1 157 0 7 1476 297 0 0 0 chr9 116889391 116889424 -7186748 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1476 357 259 116 10 chr9 116889554 116889753 -7186419 - L1M6 LINE L1 -5347 1149 930 7 1476 534 271 14 14 chr9 116890223 116890365 -7185807 + B1F SINE Alu 6 147 -2 7 1476 201 255 19 29 chr9 116890366 116890471 -7185701 + (CAAA)n Simple_repeat Simple_repeat 1 104 0 7 1476 219 145 0 75 chr9 116890375 116890442 -7185730 + A-rich Low_complexity Low_complexity 4 65 0 7 1476 42062 8 2 1 chr9 116890630 116897781 -7178391 - L1Md_A LINE L1 0 6582 1 7 1476 367 373 24 0 chr9 116898742 116898868 -7177304 + RSINE1 SINE B4 16 144 -21 7 1476 285 29 0 0 chr9 116898893 116898927 -7177245 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 7 1476 324 0 0 0 chr9 116899054 116899090 -7177082 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1476 515 240 168 0 chr9 116899208 116899387 -7176785 + B3 SINE B2 1 209 -7 7 1476 223 186 0 0 chr9 116899477 116899520 -7176652 + (ATTG)n Simple_repeat Simple_repeat 1 43 0 7 1476 186 209 0 0 chr9 116899902 116899945 -7176227 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1476 210 128 0 0 chr9 116900034 116900073 -7176099 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1476 589 262 0 7 chr9 116900081 116900223 -7175949 - B3A SINE B2 -55 143 3 7 1476 210 352 0 0 chr9 116901234 116901305 -7174867 - B3A SINE B2 -127 71 1 7 1476 1289 329 148 18 chr9 116902581 116903791 -7172381 + L1M2 LINE L1 2141 3504 -2639 7 1476 183 129 0 0 chr9 116903791 116903822 -7172350 + (TATG)n Simple_repeat Simple_repeat 2 32 0 7 1476 1289 333 73 31 chr9 116903822 116904720 -7171452 + L1M2 LINE L1 3505 4445 -1698 7 1476 1058 186 14 23 chr9 116904904 116904918 -7171254 + Lx4A LINE L1 6839 6854 -204 7 1476 513 0 0 0 chr9 116904918 116904975 -7171197 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1476 1058 186 14 23 chr9 116904975 116905180 -7170992 + Lx4A LINE L1 6855 7056 -2 7 1476 186 103 0 0 chr9 116905196 116905225 -7170947 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1476 449 309 0 0 chr9 116906004 116906127 -7170045 - B3A SINE B2 -61 137 15 7 1476 3418 61 28 2 chr9 116906138 116906563 -7169609 - RLTR10C LTR ERVK 0 436 1 7 1476 265 326 21 48 chr9 116907204 116907391 -7168781 + L1M2c LINE L1 2004 2185 -4604 7 1476 996 95 0 0 chr9 116907789 116907957 -7168215 + (TC)n Simple_repeat Simple_repeat 2 169 0 7 1476 697 202 0 0 chr9 116907957 116908086 -7168086 - B1_Mur1 SINE Alu -12 137 9 7 1476 334 236 26 94 chr9 116907985 116908102 -7168070 - MT2B LTR ERVL -338 263 155 7 1476 186 71 0 0 chr9 116908800 116908828 -7167344 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1476 413 36 0 18 chr9 116908852 116908908 -7167264 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1476 457 301 71 24 chr9 116909242 116909453 -7166719 - Tigger5 DNA MER2_type -2166 240 20 7 1476 904 263 12 136 chr9 116910071 116910300 -7165872 - MTE2a LTR MaLR -17 362 147 7 1476 3264 158 21 19 chr9 116910300 116910863 -7165309 + RLTR12A LTR ERVK 1 564 -4 7 1476 904 263 12 136 chr9 116910863 116911046 -7165126 - MTE2a LTR MaLR -233 146 1 7 1476 195 264 105 24 chr9 116911366 116911490 -7164682 + L4 LINE RTE 1681 1814 -215 7 1476 666 58 0 0 chr9 116911507 116911594 -7164578 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 7 1476 601 314 15 49 chr9 116911914 116912118 -7164054 - MTD LTR MaLR -195 224 28 7 1476 1307 211 82 28 chr9 116912414 116912770 -7163402 - ORR1C2 LTR MaLR 0 384 10 7 1476 585 260 32 7 chr9 116912834 116912989 -7163183 - RSINE1 SINE B4 -4 161 3 7 1476 189 214 0 0 chr9 116913476 116913518 -7162654 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 1476 496 306 108 6 chr9 116913527 116913685 -7162487 + B3A SINE B2 2 175 -23 7 1476 294 278 42 119 chr9 116914283 116914517 -7161655 + B4A SINE B4 1 218 -74 7 1476 351 65 0 0 chr9 116914556 116914602 -7161570 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1476 1098 23 0 0 chr9 116914602 116914734 -7161438 + (GA)n Simple_repeat Simple_repeat 2 134 0 7 1476 809 271 108 57 chr9 116914800 116914961 -7161211 + ORR1D2 LTR MaLR 1 157 -213 7 1476 907 136 14 21 chr9 116914961 116915104 -7161068 + B1_Mur4 SINE Alu 2 143 -7 7 1476 809 271 108 57 chr9 116915104 116915294 -7160878 + ORR1D2 LTR MaLR 158 370 0 7 1476 502 322 44 4 chr9 116915481 116915709 -7160463 + Lx8 LINE L1 6743 6979 -494 7 1476 387 0 0 0 chr9 116916164 116916207 -7159965 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1477 229 270 32 53 chr9 116916526 116916551 -7159621 + B1_Mur2 SINE Alu 24 114 -34 8 1477 256 309 0 0 chr9 116916551 116916619 -7159553 + ID_B1 SINE B4 126 193 -31 8 1477 687 233 45 45 chr9 116916811 116917009 -7159163 + B3A SINE B2 1 198 0 8 1477 507 304 82 29 chr9 116917765 116917972 -7158200 - ID_B1 SINE B4 -4 220 3 8 1477 247 254 45 0 chr9 116918249 116918316 -7157856 - RMER30 DNA MER1_type 0 202 133 8 1477 330 91 0 0 chr9 116918551 116918606 -7157566 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 8 1477 986 290 7 21 chr9 116918613 116918898 -7157274 - B4A SINE B4 -10 282 2 8 1477 1480 11 11 0 chr9 116919287 116919465 -7156707 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 8 1477 621 0 0 0 chr9 116919467 116919536 -7156636 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 8 1477 527 273 78 22 chr9 116919574 116919754 -7156418 - B3 SINE B2 -7 209 20 8 1477 807 303 7 34 chr9 116920690 116920984 -7155188 - B4 SINE B4 -6 286 1 8 1477 378 266 113 17 chr9 116921110 116921225 -7154947 - B1F1 SINE Alu -1 148 23 8 1477 234 313 94 20 chr9 116921762 116921964 -7154208 + L1MA6 LINE L1 6052 6268 -32 8 1477 631 272 125 0 chr9 116922253 116922437 -7153735 - ID_B1 SINE B4 -17 207 1 8 1477 777 333 51 15 chr9 116922444 116922779 -7153393 + MER21B LTR ERV1 468 814 -49 8 1477 377 296 9 9 chr9 116923783 116923892 -7152280 - ID_B1 SINE B4 -29 195 87 8 1477 387 207 162 0 chr9 116924114 116924225 -7151947 + B4A SINE B4 105 233 -59 8 1477 279 324 93 13 chr9 116924225 116924375 -7151797 + RSINE1 SINE B4 2 163 -2 8 1477 220 324 0 14 chr9 116924377 116924446 -7151726 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 1477 290 284 0 83 chr9 116924794 116924890 -7151282 - RSINE1 SINE B4 0 165 78 8 1477 581 251 65 18 chr9 116925586 116925756 -7150416 - B4 SINE B4 -3 289 112 8 1477 202 128 64 0 chr9 116926358 116926405 -7149767 + CT-rich Low_complexity Low_complexity 1 50 0 8 1477 289 204 98 24 chr9 116926620 116926743 -7149429 + L1MA4 LINE L1 5763 5903 -1741 8 1477 478 107 25 68 chr9 116926926 116927087 -7149085 + GA-rich Low_complexity Low_complexity 4 157 0 8 1477 285 214 0 28 chr9 116927198 116927304 -7148868 + GA-rich Low_complexity Low_complexity 2 104 0 8 1477 288 277 61 50 chr9 116928590 116928689 -7147483 - B1F1 SINE Alu -20 100 1 8 1477 762 263 52 52 chr9 116928711 116929000 -7147172 + B4A SINE B4 1 289 -3 8 1477 623 271 130 9 chr9 116929421 116929614 -7146558 + B4 SINE B4 2 216 -76 8 1477 363 18 17 35 chr9 116929614 116929672 -7146500 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 8 1477 623 271 130 9 chr9 116929672 116929709 -7146463 + B4 SINE B4 217 258 -34 8 1477 250 361 60 8 chr9 116930511 116930645 -7145527 + LTR33A LTR ERVL 228 368 -152 8 1477 332 220 244 39 chr9 116931163 116931343 -7144829 + ID_B1 SINE B4 1 217 -7 8 1477 515 363 44 9 chr9 116931350 116931575 -7144597 + Lx8 LINE L1 7094 7326 -147 8 1477 426 20 0 0 chr9 116931576 116931627 -7144545 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1477 877 266 88 45 chr9 116932338 116932669 -7143503 - MTD LTR MaLR -34 385 41 8 1477 719 264 13 10 chr9 116932874 116933083 -7143089 + B3A SINE B2 3 215 -1 8 1477 202 220 0 0 chr9 116933345 116933395 -7142777 + T-rich Low_complexity Low_complexity 5 54 0 8 1477 7717 97 14 7 chr9 116933448 116935211 -7140961 - L1_Mus3 LINE L1 0 6638 4864 8 1477 23 0 0 0 chr9 116935545 116935568 -7140604 + AT_rich Low_complexity Low_complexity 1 23 0 8 1477 4667 107 35 11 chr9 116936106 116936818 -7139354 - Lx LINE L1 0 6654 5926 8 1477 231 173 0 0 chr9 116937008 116937060 -7139112 + T-rich Low_complexity Low_complexity 1 52 0 8 1477 188 281 0 50 chr9 116938284 116938344 -7137828 + L2c LINE L2 3087 3143 -244 8 1477 189 74 0 0 chr9 116939029 116939056 -7137116 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1477 216 297 16 0 chr9 116939414 116939478 -7136694 + C-rich Low_complexity Low_complexity 3 67 0 8 1477 205 274 0 0 chr9 116939876 116939938 -7136234 + A-rich Low_complexity Low_complexity 1 62 0 8 1477 1666 198 91 5 chr9 116941812 116942187 -7133985 + MTD LTR MaLR 13 419 0 8 1477 1014 61 0 53 chr9 116942214 116942404 -7133768 + (TCC)n Simple_repeat Simple_repeat 1 180 0 8 1477 450 259 18 9 chr9 116942918 116943031 -7133141 - B3 SINE B2 -38 178 65 8 1477 1099 258 15 48 chr9 116943771 116944101 -7132071 + MTE2a LTR MaLR 56 374 -5 8 1477 416 111 14 0 chr9 116944864 116944936 -7131236 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1477 423 0 0 0 chr9 116945646 116945693 -7130479 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1477 458 239 181 30 chr9 116945753 116945990 -7130182 + L1M3 LINE L1 3130 3402 -2738 8 1477 609 287 138 25 chr9 116946005 116946280 -7129892 - MTD LTR MaLR 0 419 114 8 1477 328 288 109 23 chr9 116946587 116946761 -7129411 + L1M3 LINE L1 3614 3805 -2341 8 1477 355 365 42 50 chr9 116946908 116947257 -7128915 - MTEa LTR MaLR -13 366 2 8 1477 550 276 270 21 chr9 116947296 116947878 -7128294 + L1M3 LINE L1 4056 4782 -1358 8 1477 778 258 6 6 chr9 116947884 116948052 -7128120 + B3A SINE B2 1 168 -30 8 1477 23 33 0 0 chr9 116948079 116948109 -7128063 + AT_rich Low_complexity Low_complexity 1 30 0 8 1477 365 306 101 7 chr9 116948265 116948541 -7127631 - L1_Mur3 LINE L1 -489 5391 5090 8 1477 203 169 33 17 chr9 116948633 116948693 -7127479 + (TATAA)n Simple_repeat Simple_repeat 4 64 0 8 1477 218 176 0 19 chr9 116948694 116948746 -7127426 + (TATG)n Simple_repeat Simple_repeat 2 52 0 8 1477 227 312 25 12 chr9 116948764 116948845 -7127327 + ID SINE ID 2 83 -141 8 1477 342 0 0 0 chr9 116948862 116948900 -7127272 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1477 363 44 0 0 chr9 116948902 116948947 -7127225 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1477 792 254 30 98 chr9 116948953 116949250 -7126922 - B4 SINE B4 -14 278 2 8 1477 633 295 69 10 chr9 116949985 116950187 -7125985 + B4A SINE B4 39 252 -40 8 1477 474 18 0 0 chr9 116950218 116950273 -7125899 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 1477 205 184 26 0 chr9 116950473 116950511 -7125661 + (TTAGGG)n Simple_repeat Simple_repeat 2 40 0 8 1477 1113 123 0 0 chr9 116950513 116950692 -7125480 + (CTAGGG)n Simple_repeat Simple_repeat 1 179 0 8 1477 206 246 0 95 chr9 116951868 116951931 -7124241 + L4 LINE RTE 635 691 -1338 8 1477 333 232 105 60 chr9 116952099 116952232 -7123940 + RMER15 LTR ERVL 277 415 -160 8 1477 1380 48 180 0 chr9 116952453 116952642 -7123530 - L1_Mus1 LINE L1 0 6567 6345 8 1477 4120 65 2 8 chr9 116952642 116953169 -7123003 + L1_Mus1 LINE L1 5838 6361 -206 8 1477 458 213 10 15 chr9 116953494 116953707 -7122465 + CT-rich Low_complexity Low_complexity 1 211 0 8 1477 447 19 0 0 chr9 116953864 116953916 -7122256 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1477 337 320 43 59 chr9 116954431 116954617 -7121555 - B3A SINE B2 -14 184 2 8 1477 1095 94 0 0 chr9 116955407 116955587 -7120585 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1477 585 291 37 25 chr9 116955606 116955768 -7120404 - B3A SINE B2 -34 164 1 8 1477 22 0 0 0 chr9 116955821 116955843 -7120329 + AT_rich Low_complexity Low_complexity 1 22 0 8 1477 721 249 73 77 chr9 116956233 116956520 -7119652 + B4A SINE B4 6 291 -1 8 1477 535 227 115 33 chr9 116957834 116958016 -7118156 - B3A SINE B2 -1 197 1 8 1477 432 259 8 65 chr9 116959010 116959134 -7117038 - RMER30 DNA MER1_type -2 200 84 8 1477 350 262 15 159 chr9 116959015 116959210 -7116962 + Charlie12 DNA MER1_type 7 173 -2700 8 1477 593 261 0 6 chr9 116959400 116959581 -7116591 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1477 479 196 88 0 chr9 116960365 116960467 -7115705 + PB1D9 SINE Alu 3 113 -7 8 1477 316 208 55 14 chr9 116960491 116960564 -7115608 + B4A SINE B4 6 81 -211 8 1477 569 242 156 0 chr9 116961137 116961323 -7114849 + B3 SINE B2 2 216 0 8 1477 643 309 91 0 chr9 116961474 116961717 -7114455 + B4A SINE B4 24 288 -4 8 1477 360 0 0 0 chr9 116961764 116961804 -7114368 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1477 809 269 98 36 chr9 116961842 116962116 -7114056 + B4A SINE B4 2 292 0 8 1477 653 180 156 72 chr9 116963178 116963358 -7112814 - B3A SINE B2 -1 197 3 8 1477 549 0 0 0 chr9 116963374 116963435 -7112737 + (CTTG)n Simple_repeat Simple_repeat 2 62 0 8 1477 727 72 18 0 chr9 116963920 116964031 -7112141 + (TAGA)n Simple_repeat Simple_repeat 3 115 0 8 1477 545 284 130 6 chr9 116964199 116964236 -7111936 - B3 SINE B2 -1 215 179 8 1477 480 35 0 0 chr9 116964236 116964294 -7111878 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1477 545 284 130 6 chr9 116964294 116964433 -7111739 - B3 SINE B2 -38 178 17 8 1477 540 0 0 0 chr9 116965915 116965975 -7110197 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 1477 777 296 5 0 chr9 116966366 116966579 -7109593 + ID_B1 SINE B4 3 216 -8 8 1477 281 64 0 41 chr9 116966593 116966642 -7109530 + (TTA)n Simple_repeat Simple_repeat 3 49 0 8 1477 401 253 11 0 chr9 116966651 116966746 -7109426 + B3 SINE B2 117 212 -4 8 1477 548 291 116 0 chr9 116967010 116967199 -7108973 + ID_B1 SINE B4 2 212 -12 8 1477 240 287 47 0 chr9 116967362 116967448 -7108724 - B1F2 SINE Alu -53 96 7 8 1477 415 310 102 28 chr9 116967500 116967676 -7108496 + RLTR18B LTR ERVK 3 191 -321 8 1477 1111 248 134 3 chr9 116967776 116968120 -7108052 + RLTR18B LTR ERVK 124 512 0 8 1477 2912 210 32 19 chr9 116968819 116969387 -7106785 + Lx5 LINE L1 6472 7046 -4 9 1477 205 237 0 0 chr9 116969507 116969545 -7106627 + polypurine Low_complexity Low_complexity 4 41 0 9 1477 234 62 0 0 chr9 116969548 116969580 -7106592 + (GGA)n Simple_repeat Simple_repeat 3 34 0 9 1477 303 28 0 0 chr9 116969674 116969710 -7106462 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 9 1477 645 199 227 0 chr9 116969747 116969923 -7106249 - B3 SINE B2 0 216 1 9 1477 435 119 36 18 chr9 116970273 116970384 -7105788 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 9 1477 387 0 0 0 chr9 116970577 116970620 -7105552 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1477 432 0 0 0 chr9 116970973 116971021 -7105151 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1477 587 54 33 0 chr9 116971603 116971695 -7104477 + L1Md_F2 LINE L1 6488 6582 0 9 1477 1874 115 21 63 chr9 116971739 116972074 -7104098 + ORR1A3 LTR MaLR 6 326 0 9 1477 459 291 27 64 chr9 116972079 116972266 -7103906 + B3A SINE B2 19 198 0 9 1477 225 0 0 0 chr9 116972608 116972633 -7103539 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1477 360 309 95 5 chr9 116973385 116973574 -7102598 + MLT1B LTR MaLR 185 390 0 9 1477 1144 95 0 0 chr9 116973701 116973848 -7102324 + B1_Mus2 SINE Alu 1 147 0 9 1477 271 171 69 15 chr9 116973876 116974007 -7102165 + (TA)n Simple_repeat Simple_repeat 1 138 0 9 1477 694 261 6 18 chr9 116974041 116974205 -7101967 - RSINE1 SINE B4 -1 164 3 9 1477 636 224 156 27 chr9 116975179 116975404 -7100768 - B4 SINE B4 -23 269 16 9 1477 221 186 0 0 chr9 116975850 116975893 -7100279 - B3A SINE B2 -149 49 7 9 1477 1226 224 31 135 chr9 116976097 116976141 -7100031 - MTE2a LTR MaLR 0 379 330 9 1477 240 35 0 0 chr9 116976141 116976170 -7100002 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1477 1226 224 31 135 chr9 116976170 116976548 -7099624 - MTE2a LTR MaLR -50 329 2 9 1477 288 0 0 0 chr9 116976651 116976683 -7099489 + (TTG)n Simple_repeat Simple_repeat 2 33 0 9 1477 185 385 93 10 chr9 116976749 116976943 -7099229 + MIRb SINE MIR 22 231 -37 9 1477 329 280 31 39 chr9 116977930 116978060 -7098112 + RMER15 LTR ERVL 6 134 -441 9 1477 238 333 113 9 chr9 116978106 116978212 -7097960 - B4 SINE B4 -175 117 1 9 1477 869 237 19 5 chr9 116978396 116978608 -7097564 - ID_B1 SINE B4 -8 216 2 9 1477 344 259 87 20 chr9 116979295 116979445 -7096727 + MLT1A0 LTR MaLR 130 289 -76 9 1477 493 306 49 22 chr9 116980152 116980336 -7095836 - B3A SINE B2 -8 190 2 9 1477 247 179 30 0 chr9 116980419 116980486 -7095686 + GA-rich Low_complexity Low_complexity 2 70 0 9 1477 354 80 0 0 chr9 116980724 116980774 -7095398 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1477 222 116 0 0 chr9 116980819 116980862 -7095310 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1477 510 265 42 8 chr9 116981238 116981356 -7094816 + B3A SINE B2 1 122 -76 9 1477 1205 20 20 0 chr9 116981387 116981537 -7094635 + (TCTCCC)n Simple_repeat Simple_repeat 5 157 0 9 1477 387 0 0 0 chr9 116982192 116982235 -7093937 + (TC)n Simple_repeat Simple_repeat 1 43 0 9 1477 298 20 82 0 chr9 116982747 116982796 -7093376 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 9 1477 1544 178 117 8 chr9 116983473 116983831 -7092341 - MTD LTR MaLR -13 406 10 9 1477 705 229 66 123 chr9 116984273 116984606 -7091566 - MTE2a LTR MaLR -14 365 52 9 1477 244 306 26 69 chr9 116984597 116984713 -7091459 + B4 SINE B4 164 274 -18 9 1477 435 38 0 0 chr9 116984731 116984784 -7091388 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1477 763 250 53 34 chr9 116985432 116985697 -7090475 + B4A SINE B4 1 270 -22 9 1477 470 114 13 0 chr9 116985697 116985776 -7090396 + (CA)n Simple_repeat Simple_repeat 1 80 0 9 1477 238 111 43 43 chr9 116987383 116987430 -7088742 + MER5A1 DNA MER1_type 2 48 -118 9 1477 590 343 35 0 chr9 116987590 116987759 -7088413 + B4 SINE B4 5 179 -113 9 1477 192 77 0 0 chr9 116987843 116987869 -7088303 + (TATG)n Simple_repeat Simple_repeat 4 29 0 9 1477 316 0 22 22 chr9 116988110 116988155 -7088017 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 9 1477 24 32 0 0 chr9 116989057 116989088 -7087084 + AT_rich Low_complexity Low_complexity 1 31 0 9 1477 847 243 24 19 chr9 116989088 116989294 -7086878 - B3 SINE B2 -4 212 6 9 1477 564 15 0 0 chr9 116989304 116989369 -7086803 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1477 301 113 56 0 chr9 116991281 116991352 -7084820 + (TATG)n Simple_repeat Simple_repeat 2 76 0 9 1477 203 112 24 59 chr9 116991337 116991422 -7084750 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 9 1477 214 162 14 81 chr9 116991437 116991511 -7084661 + (CTAAT)n Simple_repeat Simple_repeat 5 73 0 9 1477 286 256 48 24 chr9 116991485 116991653 -7084519 + (TCTA)n Simple_repeat Simple_repeat 2 173 0 9 1477 265 236 72 12 chr9 116991700 116991867 -7084305 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 9 1477 360 0 0 0 chr9 116991889 116991929 -7084243 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1477 234 0 0 0 chr9 116991929 116991954 -7084218 + (GA)n Simple_repeat Simple_repeat 1 26 0 9 1477 386 219 0 9 chr9 116992976 116993082 -7083090 + (CATATA)n Simple_repeat Simple_repeat 1 105 0 9 1477 260 193 0 34 chr9 116993701 116993760 -7082412 + B3 SINE B2 3 59 -157 9 1477 1048 156 57 0 chr9 116993764 116993900 -7082272 + B3 SINE B2 14 160 -56 9 1477 441 0 0 0 chr9 116993900 116993949 -7082223 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1477 1048 156 57 0 chr9 116993949 116994004 -7082168 + B3 SINE B2 161 215 -1 9 1477 333 315 57 35 chr9 116994552 116994875 -7081297 + L1MD LINE L1 3999 4323 -1820 9 1477 258 81 0 0 chr9 116994875 116994912 -7081260 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1477 488 265 69 25 chr9 116996541 116996700 -7079472 + RMER30 DNA MER1_type 16 181 -21 9 1477 1188 55 14 0 chr9 116998164 116998310 -7077862 - B1_Mus1 SINE Alu 0 148 1 9 1477 253 237 13 13 chr9 116998335 116998412 -7077760 - B4 SINE B4 -214 78 2 9 1477 451 223 53 9 chr9 116999564 116999677 -7076495 + RSINE1 SINE B4 12 129 -36 9 1477 21 82 0 0 chr9 116999699 116999748 -7076424 + AT_rich Low_complexity Low_complexity 1 49 0 9 1477 401 269 40 60 chr9 116999850 117000000 -7076172 + RSINE1 SINE B4 3 149 -16 9 1477 499 321 109 20 chr9 117000978 117001226 -7074946 - ORR1E LTR MaLR -17 342 73 1 1477 405 251 0 0 chr9 117001828 117002092 -7074080 + (TG)n Simple_repeat Simple_repeat 1 264 0 2 1477 437 299 12 0 chr9 117002107 117002274 -7073898 + (TG)n Simple_repeat Simple_repeat 1 169 0 2 1477 294 225 0 0 chr9 117002293 117002404 -7073768 + (TG)n Simple_repeat Simple_repeat 1 111 0 2 1477 582 302 57 10 chr9 117004080 117004274 -7071898 + B3 SINE B2 9 211 -5 3 1477 827 134 7 0 chr9 117004894 117005036 -7071136 + (GGA)n Simple_repeat Simple_repeat 3 145 0 4 1477 22 0 0 0 chr9 117005036 117005058 -7071114 + AT_rich Low_complexity Low_complexity 1 22 0 5 1477 755 256 54 22 chr9 117005382 117005606 -7070566 + ORR1E LTR MaLR 25 255 -104 6 1477 279 274 104 0 chr9 117005625 117005727 -7070445 + MTE2a LTR MaLR 2 104 -315 7 1477 420 223 11 0 chr9 117005735 117005829 -7070343 + B3 SINE B2 120 214 -2 8 1477 985 171 136 0 chr9 117006134 117006333 -7069839 - URR1A DNA MER1_type 0 226 1 9 1477 400 276 43 0 chr9 117006490 117006606 -7069566 + B1F SINE Alu 26 146 -3 1 1477 624 87 0 0 chr9 117006681 117006773 -7069399 + (TC)n Simple_repeat Simple_repeat 2 93 0 1 1477 270 95 0 0 chr9 117006793 117006835 -7069337 + (TTAG)n Simple_repeat Simple_repeat 3 44 0 1 1477 561 267 65 22 chr9 117006839 117006969 -7069203 - B3 SINE B2 -24 192 55 1 1477 855 78 0 0 chr9 117006969 117007085 -7069087 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 1 1477 561 267 65 22 chr9 117007085 117007138 -7069034 - B3 SINE B2 -162 54 1 1 1477 21 0 0 0 chr9 117007854 117007875 -7068297 + AT_rich Low_complexity Low_complexity 1 21 0 1 1477 517 175 21 0 chr9 117008586 117008683 -7067489 + ID_B1 SINE B4 109 207 -17 1 1477 248 91 23 0 chr9 117009012 117009056 -7067116 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 1 1477 631 213 21 0 chr9 117009669 117009810 -7066362 + B1F SINE Alu 3 146 -3 1 1477 801 301 51 4 chr9 117010030 117010303 -7065869 + B4A SINE B4 5 290 -2 1 1477 240 338 25 76 chr9 117010419 117010576 -7065596 + MER5B DNA MER1_type 15 163 -15 2 1477 778 302 24 41 chr9 117010875 117011165 -7065007 - B4 SINE B4 -7 285 1 2 1477 548 223 0 51 chr9 117012144 117012262 -7063910 - PB1D10 SINE Alu -2 115 4 2 1477 186 43 0 0 chr9 117012602 117012625 -7063547 + (CAGAGA)n Simple_repeat Simple_repeat 4 26 0 2 1477 294 247 61 24 chr9 117013183 117013289 -7062883 + B1F SINE Alu 12 116 -1 2 1477 387 271 50 66 chr9 117014096 117014288 -7061884 - ID_B1 SINE B4 -13 211 28 2 1477 793 252 23 27 chr9 117014709 117014929 -7061243 + ID_B1 SINE B4 5 223 -1 2 1477 375 141 0 0 chr9 117016020 117016084 -7060088 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1477 4781 126 73 15 chr9 117016194 117017047 -7059125 + RMER17A2 LTR ERVK 1 902 -4 2 1477 463 276 29 43 chr9 117017042 117017182 -7058990 - B4 SINE B4 -137 155 18 2 1477 298 282 49 0 chr9 117018014 117018177 -7057995 + T-rich Low_complexity Low_complexity 2 172 0 3 1477 551 171 0 8 chr9 117019363 117019493 -7056679 + (CA)n Simple_repeat Simple_repeat 1 129 0 3 1477 200 269 36 60 chr9 117020326 117020409 -7055763 + MIRc SINE MIR 43 123 -145 3 1477 392 353 24 82 chr9 117020643 117020850 -7055322 + B3A SINE B2 1 195 -3 3 1477 1187 236 99 25 chr9 117020980 117021333 -7054839 + MTEa LTR MaLR 1 379 0 3 1477 1128 81 0 0 chr9 117023313 117023526 -7052646 + (TG)n Simple_repeat Simple_repeat 1 213 0 3 1477 772 305 32 54 chr9 117023645 117023922 -7052250 - B4A SINE B4 -19 273 3 3 1477 717 153 17 23 chr9 117024385 117024559 -7051613 + GA-rich Low_complexity Low_complexity 3 175 0 3 1477 274 304 101 29 chr9 117025289 117025428 -7050744 - MIR SINE MIR -90 172 24 3 1477 494 309 15 55 chr9 117026103 117026305 -7049867 - MER20 DNA MER1_type -1 218 25 3 1477 34 65 0 0 chr9 117027686 117027748 -7048424 + AT_rich Low_complexity Low_complexity 1 62 0 4 1477 547 247 6 76 chr9 117028983 117029154 -7047018 + B3A SINE B2 7 165 -33 4 1477 396 0 0 0 chr9 117029158 117029202 -7046970 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1477 324 0 0 0 chr9 117029202 117029237 -7046935 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1477 627 199 11 17 chr9 117029682 117029856 -7046316 + GA-rich Low_complexity Low_complexity 1 173 0 4 1477 188 262 0 15 chr9 117029913 117029979 -7046193 + GA-rich Low_complexity Low_complexity 3 67 0 4 1477 771 151 6 12 chr9 117029994 117030155 -7046017 + GA-rich Low_complexity Low_complexity 4 163 0 4 1477 408 312 58 7 chr9 117030848 117031003 -7045169 + ID_B1 SINE B4 49 211 -13 4 1477 192 77 0 0 chr9 117031012 117031038 -7045134 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 4 1477 655 284 0 56 chr9 117031749 117031928 -7044244 + ORR1E LTR MaLR 22 190 -169 4 1477 411 56 0 0 chr9 117031939 117031993 -7044179 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1477 337 290 10 20 chr9 117032344 117032446 -7043726 + ORR1E LTR MaLR 174 274 -105 4 1477 489 238 30 8 chr9 117032472 117032603 -7043569 + ORR1E LTR MaLR 246 379 0 4 1477 315 275 0 12 chr9 117032666 117032747 -7043425 + RMER30 DNA MER1_type 1 80 -122 4 1477 1334 231 97 6 chr9 117032814 117033153 -7043019 + ORR1D1 LTR MaLR 1 370 -4 5 1477 717 254 34 48 chr9 117034121 117034328 -7041844 + B4 SINE B4 26 229 -63 5 1477 486 0 0 0 chr9 117034451 117034505 -7041667 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1477 512 276 23 30 chr9 117036499 117036630 -7039542 - RSINE1 SINE B4 -33 132 3 5 1477 354 338 20 14 chr9 117036978 117037125 -7039047 + ID_B1 SINE B4 1 148 -76 5 1477 367 310 68 98 chr9 117038047 117038312 -7037860 + B4A SINE B4 29 285 -7 5 1477 618 211 0 0 chr9 117038368 117038548 -7037624 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1477 461 240 0 11 chr9 117038563 117038744 -7037428 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1477 852 211 0 0 chr9 117038774 117039115 -7037057 + (CA)n Simple_repeat Simple_repeat 1 341 0 5 1477 321 89 0 0 chr9 117039123 117039168 -7037004 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1477 516 228 0 0 chr9 117039157 117039328 -7036844 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 1477 387 0 0 0 chr9 117039743 117039786 -7036386 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1477 334 230 124 48 chr9 117039937 117040042 -7036130 + RSINE1 SINE B4 53 165 0 6 1477 552 231 193 17 chr9 117040168 117040344 -7035828 - B3 SINE B2 -4 212 6 6 1477 736 276 8 83 chr9 117040728 117040993 -7035179 + MTD LTR MaLR 74 318 -101 6 1477 21 36 0 0 chr9 117041322 117041350 -7034822 + AT_rich Low_complexity Low_complexity 1 28 0 6 1477 719 141 70 0 chr9 117041952 117042080 -7034092 - URR1B DNA MER1_type 0 225 89 6 1477 457 340 148 12 chr9 117042826 117043076 -7033096 + B4A SINE B4 5 288 -4 6 1477 304 143 14 14 chr9 117043102 117043173 -7032999 + (CATA)n Simple_repeat Simple_repeat 4 74 0 6 1477 333 0 0 0 chr9 117043604 117043641 -7032531 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1477 361 287 57 0 chr9 117043728 117043850 -7032322 + RSINE1 SINE B4 37 165 0 6 1477 868 273 33 60 chr9 117044780 117045080 -7031092 - B4A SINE B4 0 292 1 6 1477 926 69 0 15 chr9 117045092 117045224 -7030948 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 7 1477 747 118 15 7 chr9 117045232 117045369 -7030803 - L1_Mus3 LINE L1 0 6638 6501 7 1477 652 273 77 19 chr9 117045736 117045945 -7030227 - B4A SINE B4 -66 226 6 7 1477 22 35 0 0 chr9 117046636 117046665 -7029507 + AT_rich Low_complexity Low_complexity 1 29 0 7 1477 591 157 0 0 chr9 117046972 117047080 -7029092 + CT-rich Low_complexity Low_complexity 3 110 0 7 1478 495 0 0 0 chr9 117047413 117047468 -7028704 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1478 354 45 0 0 chr9 117048024 117048068 -7028104 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1478 463 296 27 95 chr9 117048138 117048433 -7027739 - B4 SINE B4 -16 276 2 7 1478 1059 266 8 38 chr9 117049241 117049555 -7026617 + B4 SINE B4 2 288 -4 7 1478 400 239 11 0 chr9 117049899 117049991 -7026181 + RSINE1 SINE B4 5 97 -68 7 1478 939 238 5 0 chr9 117050589 117050774 -7025398 - B3A SINE B2 -4 194 9 8 1478 399 304 10 10 chr9 117051682 117051785 -7024387 - RSINE1 SINE B4 -61 104 2 8 1478 334 295 25 43 chr9 117051868 117052031 -7024141 - L1MB3 LINE L1 -74 6109 5950 8 1478 201 94 0 0 chr9 117052618 117052650 -7023522 + (CCCA)n Simple_repeat Simple_repeat 3 34 0 8 1478 724 272 38 24 chr9 117054683 117054894 -7021278 - B3 SINE B2 -1 215 2 8 1478 23 0 0 0 chr9 117055262 117055285 -7020887 + AT_rich Low_complexity Low_complexity 1 23 0 8 1478 314 244 101 101 chr9 117055543 117055771 -7020401 - L1MC4 LINE L1 -64 7978 7751 8 1478 227 288 125 17 chr9 117055804 117055924 -7020248 - L1MC4 LINE L1 -594 7448 7316 8 1478 203 167 21 0 chr9 117056161 117056174 -7019998 + A-rich Low_complexity Low_complexity 2 14 0 8 1478 1147 49 14 27 chr9 117056174 117056322 -7019850 + B1_Mus2 SINE Alu 2 147 0 8 1478 203 167 21 0 chr9 117056322 117056356 -7019816 + A-rich Low_complexity Low_complexity 15 49 0 8 1478 267 103 0 0 chr9 117056381 117056420 -7019752 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1478 1232 196 154 30 chr9 117056713 117056879 -7019293 - ORR1D1 LTR MaLR -2 372 182 9 1478 456 62 0 0 chr9 117056879 117056943 -7019229 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 9 1478 1232 196 154 30 chr9 117056943 117057107 -7019065 - ORR1D1 LTR MaLR -193 181 1 9 1478 542 303 69 54 chr9 117057183 117057459 -7018713 - B4A SINE B4 -12 280 1 9 1478 796 277 10 16 chr9 117058273 117058491 -7017681 + B3A SINE B2 1 216 0 9 1478 878 271 113 21 chr9 117059307 117059643 -7016529 + MTD LTR MaLR 53 419 0 9 1478 1058 295 23 54 chr9 117060199 117060522 -7015650 - MTE2b LTR MaLR -4 375 60 9 1478 2901 56 12 69 chr9 117060522 117060942 -7015230 + MTA_Mm LTR MaLR 1 396 0 9 1478 1058 295 23 54 chr9 117060942 117061005 -7015167 - MTE2b LTR MaLR -320 59 1 9 1478 948 241 183 19 chr9 117061879 117062201 -7013971 - MTEb LTR MaLR -1 378 4 9 1478 180 0 0 0 chr9 117062430 117062450 -7013722 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 9 1478 1133 69 0 14 chr9 117062493 117062640 -7013532 - B1_Mus1 SINE Alu -2 146 2 1 1478 446 289 17 9 chr9 117064442 117064557 -7011615 - RSINE1 SINE B4 -46 119 4 1 1478 497 238 128 39 chr9 117066409 117066588 -7009584 - B3A SINE B2 -2 196 2 1 1478 300 246 8 16 chr9 117067012 117067136 -7009036 + CT-rich Low_complexity Low_complexity 2 124 0 1 1478 1180 86 11 0 chr9 117067155 117067330 -7008842 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1 1478 642 311 9 19 chr9 117067330 117067546 -7008626 - ID_B1 SINE B4 -9 215 2 1 1478 612 137 0 0 chr9 117067558 117067660 -7008512 + (TATG)n Simple_repeat Simple_repeat 1 102 0 1 1478 406 287 9 0 chr9 117067888 117068003 -7008169 + PB1D10 SINE Alu 1 116 -1 1 1478 225 336 0 29 chr9 117068103 117068241 -7007931 + (ATAGG)n Simple_repeat Simple_repeat 2 135 0 1 1478 207 225 0 42 chr9 117068241 117068385 -7007787 + (ACATG)n Simple_repeat Simple_repeat 5 142 0 1 1478 312 223 0 33 chr9 117068455 117068636 -7007536 + (ATATG)n Simple_repeat Simple_repeat 4 178 0 1 1478 306 262 235 12 chr9 117068869 117069039 -7007133 - B4A SINE B4 0 292 85 1 1478 382 121 183 33 chr9 117069282 117069402 -7006770 + RMER17C LTR ERVK 137 274 -136 1 1478 286 285 85 59 chr9 117070994 117071147 -7005025 + RSINE1 SINE B4 3 159 -6 1 1478 1254 34 6 22 chr9 117071587 117071769 -7004403 + (TC)n Simple_repeat Simple_repeat 1 179 0 1 1478 253 254 42 14 chr9 117071769 117071836 -7004336 - ID_B1 SINE B4 -9 215 146 1 1478 249 83 0 0 chr9 117073293 117073329 -7002843 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1478 597 269 80 91 chr9 117073361 117073416 -7002756 - B4A SINE B4 -14 278 214 1 1478 389 20 20 0 chr9 117073416 117073466 -7002706 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1478 201 74 0 0 chr9 117073466 117073493 -7002679 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1 1478 597 269 80 91 chr9 117073493 117073710 -7002462 - B4A SINE B4 -79 213 9 1 1478 21 0 0 0 chr9 117074166 117074187 -7001985 + AT_rich Low_complexity Low_complexity 1 21 0 1 1478 331 291 14 76 chr9 117074196 117074341 -7001831 + Lx7 LINE L1 6895 7030 -666 1 1478 423 83 0 0 chr9 117074414 117074474 -7001698 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1478 470 17 0 17 chr9 117074663 117074723 -7001449 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 1 1478 253 276 0 0 chr9 117075054 117075112 -7001060 - ID4_ SINE ID 0 83 26 1 1478 283 269 0 65 chr9 117075146 117075269 -7000903 - PB1D10 SINE Alu 0 117 3 1 1478 222 37 0 0 chr9 117075275 117075302 -7000870 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1 1478 314 242 0 0 chr9 117075304 117075366 -7000806 - ID_B1 SINE B4 -15 209 148 1 1478 729 179 13 27 chr9 117075792 117075941 -7000231 + B1F2 SINE Alu 2 148 -1 1 1478 479 195 9 0 chr9 117075941 117076054 -7000118 + GA-rich Low_complexity Low_complexity 1 114 0 1 1478 532 333 7 0 chr9 117076977 117077124 -6999048 + ID_B1 SINE B4 68 215 -9 1 1478 510 370 35 21 chr9 117077951 117078235 -6997937 + RMER15 LTR ERVL 276 563 -12 1 1478 752 285 10 10 chr9 117078462 117078664 -6997508 + B3 SINE B2 5 206 -10 1 1478 1055 109 0 7 chr9 117078746 117078759 -6997413 - B1_Mus2 SINE Alu 0 147 135 1 1478 306 0 0 0 chr9 117078759 117078793 -6997379 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1 1478 1055 109 0 7 chr9 117078793 117078927 -6997245 - B1_Mus2 SINE Alu -13 134 1 1 1478 619 265 14 0 chr9 117078961 117079108 -6997064 - B3 SINE B2 0 216 68 1 1478 324 0 0 0 chr9 117080894 117080930 -6995242 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1478 284 96 39 0 chr9 117081250 117081302 -6994870 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1478 585 42 0 0 chr9 117082640 117082712 -6993460 + (GAAA)n Simple_repeat Simple_repeat 3 74 0 1 1478 23 0 0 0 chr9 117082836 117082859 -6993313 + AT_rich Low_complexity Low_complexity 1 23 0 1 1478 424 276 138 65 chr9 117083251 117083511 -6992661 + B4 SINE B4 3 281 -11 1 1478 284 130 0 36 chr9 117083580 117083636 -6992536 + GA-rich Low_complexity Low_complexity 2 55 0 1 1478 876 221 71 10 chr9 117084300 117084497 -6991675 + B3 SINE B2 6 214 -2 1 1478 513 0 0 0 chr9 117085736 117085793 -6990379 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1478 579 102 0 0 chr9 117086561 117086649 -6989523 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 1 1478 855 276 0 5 chr9 117087770 117087974 -6988198 + B3 SINE B2 3 205 -11 1 1478 1254 236 34 25 chr9 117089291 117089647 -6986525 - ORR1D2 LTR MaLR -7 363 5 1 1478 341 286 185 15 chr9 117090029 117090164 -6986008 + Lx8 LINE L1 6738 6895 -578 1 1478 585 246 181 62 chr9 117090361 117090621 -6985551 + B4A SINE B4 2 292 0 1 1478 723 196 0 0 chr9 117090650 117090823 -6985349 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 1478 402 259 30 29 chr9 117092159 117092326 -6983846 - MTD LTR MaLR -162 257 83 1 1478 1156 201 149 7 chr9 117092321 117092602 -6983570 - MTD LTR MaLR -98 321 1 1 1478 300 258 20 40 chr9 117092767 117092868 -6983304 + Lx8 LINE L1 7357 7455 -18 1 1478 379 316 10 0 chr9 117093729 117093827 -6982345 + RSINE1 SINE B4 47 145 -20 1 1478 405 58 0 0 chr9 117093834 117093886 -6982286 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1478 208 135 0 0 chr9 117094310 117094347 -6981825 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 1478 248 53 26 0 chr9 117094555 117094593 -6981579 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1478 261 0 0 0 chr9 117095677 117095706 -6980466 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1478 441 0 0 0 chr9 117095706 117095754 -6980418 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1478 531 202 0 0 chr9 117095754 117095858 -6980314 - B3A SINE B2 -94 104 1 1 1478 394 293 9 109 chr9 117096925 117097136 -6979036 - B4 SINE B4 -100 192 3 1 1478 432 0 0 0 chr9 117098164 117098212 -6977960 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1478 2080 111 3 0 chr9 117098213 117098520 -6977652 + ORR1A2 LTR MaLR 20 327 0 1 1478 214 392 0 10 chr9 117098520 117098618 -6977554 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 1478 250 224 0 39 chr9 117098628 117098730 -6977442 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 1 1478 701 306 22 69 chr9 117098734 117099011 -6977161 - B4 SINE B4 -14 278 15 1 1478 383 342 27 7 chr9 117099021 117099168 -6977004 - MER5A DNA MER1_type -38 151 2 1 1478 200 188 0 0 chr9 117099440 117099472 -6976700 + polypurine Low_complexity Low_complexity 1 32 0 1 1478 620 288 18 6 chr9 117100645 117100816 -6975356 - B3A SINE B2 -23 175 3 1 1478 183 80 0 0 chr9 117100816 117100841 -6975331 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 1 1478 558 0 0 0 chr9 117101647 117101709 -6974463 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1478 290 271 195 8 chr9 117102416 117102539 -6973633 + B4A SINE B4 129 274 -18 1 1478 336 24 0 0 chr9 117102567 117102608 -6973564 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1478 549 30 0 0 chr9 117103427 117103494 -6972678 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1478 405 0 0 0 chr9 117103494 117103538 -6972634 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1478 381 95 0 0 chr9 117103645 117103708 -6972464 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1478 988 273 103 8 chr9 117103716 117104067 -6972105 - MTD LTR MaLR -14 405 22 1 1478 574 260 40 14 chr9 117104069 117104217 -6971955 - RSINE1 SINE B4 -12 153 2 1 1478 843 177 7 0 chr9 117104242 117104389 -6971783 - B1_Mur3 SINE Alu -1 148 1 1 1478 207 0 0 0 chr9 117104482 117104505 -6971667 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1478 324 0 0 0 chr9 117105018 117105054 -6971118 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1478 381 22 0 0 chr9 117105054 117105099 -6971073 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1478 379 314 119 58 chr9 117105198 117105458 -6970714 - B4 SINE B4 -14 278 3 1 1478 815 300 53 34 chr9 117105827 117106207 -6969965 + MTD LTR MaLR 13 399 -20 1 1478 435 185 204 0 chr9 117108359 117108467 -6967705 + RSINE1 SINE B4 3 132 -33 1 1478 498 75 0 0 chr9 117108482 117108549 -6967623 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1478 396 59 0 0 chr9 117108660 117108711 -6967461 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1478 845 273 0 0 chr9 117108756 117108954 -6967218 - B4 SINE B4 -87 205 8 1 1478 372 43 0 0 chr9 117109327 117109373 -6966799 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1478 570 54 0 0 chr9 117109919 117109993 -6966179 + (TATTG)n Simple_repeat Simple_repeat 2 75 0 1 1478 271 186 53 67 chr9 117109993 117110068 -6966104 - ID_B1 SINE B4 -5 219 146 1 1478 225 226 75 0 chr9 117110115 117110168 -6966004 - B1F SINE Alu -25 124 68 1 1478 225 226 75 0 chr9 117110190 117110243 -6965929 - B1F SINE Alu -25 124 68 1 1478 225 226 75 0 chr9 117110265 117110318 -6965854 - B1F SINE Alu -25 124 68 1 1478 213 286 165 0 chr9 117110290 117110381 -6965791 - B1_Mur2 SINE Alu -25 124 19 1 1478 395 307 14 0 chr9 117110689 117110749 -6965423 + ID SINE ID 21 82 -142 1 1478 368 269 48 0 chr9 117110749 117110853 -6965319 + PB1D10 SINE Alu 2 110 -7 1 1478 423 0 0 0 chr9 117111168 117111215 -6964957 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1478 405 0 0 0 chr9 117111355 117111400 -6964772 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1478 564 270 26 19 chr9 117111796 117111951 -6964221 - MTE2b LTR MaLR -2 377 222 1 1478 736 232 78 10 chr9 117112015 117112220 -6963952 + ID_B1 SINE B4 5 223 -1 1 1478 381 287 130 0 chr9 117112654 117112769 -6963403 - ID_B1 SINE B4 -9 215 86 2 1478 422 114 0 14 chr9 117112874 117112945 -6963227 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1478 287 294 53 105 chr9 117113714 117113885 -6962287 + MTE2a LTR MaLR 15 176 -203 2 1478 301 219 11 11 chr9 117114316 117114502 -6961670 + GA-rich Low_complexity Low_complexity 1 186 0 2 1478 202 160 20 20 chr9 117114915 117114966 -6961206 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1478 216 281 16 0 chr9 117114993 117115057 -6961115 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 2 1478 282 56 0 0 chr9 117115813 117115849 -6960323 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1478 253 311 28 0 chr9 117115985 117116091 -6960081 + GA-rich Low_complexity Low_complexity 4 112 0 2 1478 369 313 37 27 chr9 117116192 117116379 -6959793 + Charlie21a DNA MER1_type 50 238 -975 2 1478 1315 166 13 9 chr9 117116456 117116681 -6959491 + URR1A DNA MER1_type 1 226 0 2 1478 470 241 37 22 chr9 117116971 117117107 -6959065 + RSINE1 SINE B4 2 139 -26 2 1478 279 0 0 0 chr9 117117116 117117147 -6959025 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1478 598 281 79 8 chr9 117117223 117117463 -6958709 + B4A SINE B4 1 257 -35 2 1478 510 17 0 0 chr9 117117529 117117588 -6958584 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1478 225 0 0 0 chr9 117117626 117117651 -6958521 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1478 399 56 0 0 chr9 117117651 117117704 -6958468 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1478 239 54 0 26 chr9 117118260 117118298 -6957874 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1478 1332 184 5 0 chr9 117119736 117119959 -6956213 + URR1B DNA MER1_type 2 225 0 2 1478 312 284 0 47 chr9 117121532 117121639 -6954533 + (TATG)n Simple_repeat Simple_repeat 4 105 0 2 1478 246 62 0 0 chr9 117121652 117121684 -6954488 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1478 539 289 51 17 chr9 117121794 117121970 -6954202 - B3A SINE B2 -16 182 1 2 1478 339 332 97 53 chr9 117121970 117122177 -6953995 - B4 SINE B4 -65 227 12 2 1478 299 307 0 10 chr9 117123196 117123298 -6952874 + MER58A DNA MER1_type 37 137 -87 2 1478 728 317 69 8 chr9 117123435 117123696 -6952476 + B4 SINE B4 2 278 -14 2 1478 800 228 101 30 chr9 117124417 117124684 -6951488 + B4A SINE B4 1 286 -6 2 1478 405 0 0 0 chr9 117124692 117124737 -6951435 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1478 618 51 0 0 chr9 117125996 117126074 -6950098 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1478 490 333 61 15 chr9 117127670 117127868 -6948304 + B4A SINE B4 46 252 -40 2 1478 399 296 7 20 chr9 117127870 117128018 -6948154 - Lx7 LINE L1 -512 7184 7039 2 1478 478 311 25 35 chr9 117128135 117128335 -6947837 + B3A SINE B2 1 198 0 2 1478 447 52 0 0 chr9 117129517 117129575 -6946597 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1478 408 222 104 154 chr9 117129914 117130212 -6945960 + B4 SINE B4 3 285 -7 2 1478 642 113 0 0 chr9 117130245 117130342 -6945830 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 1478 359 57 0 36 chr9 117130907 117130962 -6945210 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 2 1478 407 312 66 45 chr9 117130977 117131175 -6944997 + B3 SINE B2 1 202 -14 2 1478 251 259 0 0 chr9 117131176 117131230 -6944942 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1478 441 0 0 0 chr9 117131285 117131334 -6944838 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 2 1478 571 315 16 11 chr9 117131345 117131531 -6944641 - ID_B1 SINE B4 -31 193 7 2 1478 602 270 91 103 chr9 117132417 117132779 -6943393 - MTE2a LTR MaLR -46 373 8 2 1478 183 186 0 0 chr9 117133795 117133838 -6942334 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 1478 1136 296 45 5 chr9 117134333 117134714 -6941458 - Lx8 LINE L1 -153 7320 6925 2 1478 571 295 16 27 chr9 117134710 117134898 -6941274 - Lx8 LINE L1 -696 6777 6592 2 1478 269 248 182 40 chr9 117135663 117135789 -6940383 + B1F SINE Alu 1 144 -5 2 1478 693 245 55 68 chr9 117136820 117136850 -6939322 + B3 SINE B2 1 22 -194 2 1478 1077 117 32 37 chr9 117136850 117137037 -6939135 - B2_Mm2 SINE B2 -7 188 3 2 1478 693 245 55 68 chr9 117137037 117137225 -6938947 + B3 SINE B2 23 216 0 2 1478 863 88 41 0 chr9 117138026 117138196 -6937976 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 2 1478 214 303 52 13 chr9 117138224 117138301 -6937871 - B1F1 SINE Alu -63 86 7 2 1478 230 269 29 15 chr9 117138407 117138475 -6937697 - ORR1E LTR MaLR -21 358 290 2 1478 1202 161 37 0 chr9 117138599 117138816 -6937356 + URR1B DNA MER1_type 1 225 0 2 1478 265 227 239 0 chr9 117138840 117138928 -6937244 - ORR1E LTR MaLR -245 114 6 2 1478 269 125 0 0 chr9 117140024 117140064 -6936108 - L1_Mm LINE L1 -753 5130 5091 2 1478 802 122 0 0 chr9 117140063 117140178 -6935994 + L1_Mur2 LINE L1 5126 5240 -637 2 1478 899 169 0 6 chr9 117140186 117140359 -6935813 + GA-rich Low_complexity Low_complexity 1 172 0 2 1478 240 295 52 15 chr9 117141197 117141331 -6934841 + B4A SINE B4 134 272 -20 2 1478 203 191 0 21 chr9 117141857 117141905 -6934267 + T-rich Low_complexity Low_complexity 3 49 0 2 1478 375 252 0 0 chr9 117142820 117142963 -6933209 + (TG)n Simple_repeat Simple_repeat 2 144 0 2 1478 830 289 79 8 chr9 117142981 117143246 -6932926 - B4 SINE B4 0 292 9 2 1478 942 112 0 0 chr9 117144159 117144337 -6931835 + (GA)n Simple_repeat Simple_repeat 1 178 0 2 1478 336 153 0 0 chr9 117144338 117144423 -6931749 + GA-rich Low_complexity Low_complexity 2 86 0 2 1478 216 149 43 0 chr9 117145076 117145123 -6931049 + CT-rich Low_complexity Low_complexity 2 50 0 2 1478 732 114 0 0 chr9 117145139 117145279 -6930893 + (GA)n Simple_repeat Simple_repeat 1 140 0 2 1478 1026 248 16 59 chr9 117145283 117145587 -6930585 - B4A SINE B4 0 292 2 2 1478 24 0 0 0 chr9 117145604 117145628 -6930544 + AT_rich Low_complexity Low_complexity 1 24 0 2 1478 1034 252 39 11 chr9 117145918 117146199 -6929973 + B4A SINE B4 2 290 -2 2 1478 198 0 0 0 chr9 117146215 117146237 -6929935 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1478 460 257 59 0 chr9 117146679 117146815 -6929357 + B1F SINE Alu 1 144 -5 2 1478 350 321 0 27 chr9 117146815 117146927 -6929245 + G-rich Low_complexity Low_complexity 4 112 0 2 1478 363 323 35 71 chr9 117147360 117147530 -6928642 - RSINE1 SINE B4 0 165 2 2 1478 234 91 0 0 chr9 117148154 117148187 -6927985 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2 1478 772 273 71 12 chr9 117148787 117149039 -6927133 + B4 SINE B4 5 271 -21 2 1478 276 84 27 53 chr9 117149039 117149114 -6927058 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 2 1478 201 74 0 0 chr9 117149111 117149138 -6927034 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1478 2968 157 72 86 chr9 117150729 117151344 -6924828 + RMER19C LTR ERVK 5 610 -1 2 1478 257 236 218 0 chr9 117152320 117152430 -6923742 + B3 SINE B2 1 134 -82 2 1478 329 329 18 68 chr9 117152695 117152858 -6923314 - RSINE1 SINE B4 -7 158 4 2 1478 189 107 0 0 chr9 117154242 117154270 -6921902 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 2 1478 22 56 0 0 chr9 117154362 117154398 -6921774 + AT_rich Low_complexity Low_complexity 1 36 0 2 1478 383 264 99 94 chr9 117154460 117154673 -6921499 - B4 SINE B4 -20 272 59 2 1478 23 0 0 0 chr9 117155257 117155280 -6920892 + AT_rich Low_complexity Low_complexity 1 23 0 2 1478 794 153 7 0 chr9 117155627 117155771 -6920401 + (CA)n Simple_repeat Simple_repeat 2 146 0 2 1478 227 79 26 0 chr9 117157617 117157655 -6918517 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1478 462 88 0 0 chr9 117159016 117159084 -6917088 + (TCTCTG)n Simple_repeat Simple_repeat 3 70 0 2 1478 190 127 27 40 chr9 117161093 117161167 -6915005 + A-rich Low_complexity Low_complexity 2 74 0 2 1478 345 254 0 0 chr9 117161433 117161547 -6914625 + A-rich Low_complexity Low_complexity 1 114 0 2 1478 201 121 0 0 chr9 117161720 117161753 -6914419 + (GAA)n Simple_repeat Simple_repeat 1 33 0 2 1478 324 0 0 0 chr9 117162021 117162057 -6914115 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1478 444 37 0 0 chr9 117162371 117162425 -6913747 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1478 405 0 0 0 chr9 117162967 117163012 -6913160 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1478 297 0 0 0 chr9 117163012 117163044 -6913128 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1478 573 287 23 41 chr9 117163044 117163262 -6912910 - ID_B1 SINE B4 -1 223 10 2 1478 469 292 0 44 chr9 117163899 117164035 -6912137 - RSINE1 SINE B4 -33 132 3 2 1478 1372 221 68 17 chr9 117164713 117165068 -6911104 + MTEa LTR MaLR 1 373 -6 2 1478 1093 289 30 66 chr9 117166072 117166465 -6909707 + MTEa LTR MaLR 1 379 0 2 1478 243 200 67 56 chr9 117166575 117166607 -6909565 - B2_Mm2 SINE B2 -1 194 164 2 1478 462 75 0 0 chr9 117166607 117166674 -6909498 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1478 272 237 53 45 chr9 117166674 117166759 -6909413 - B3 SINE B2 -46 170 89 2 1478 524 237 0 11 chr9 117167014 117167193 -6908979 + GA-rich Low_complexity Low_complexity 2 178 0 2 1478 354 293 31 77 chr9 117167422 117167618 -6908554 - MER53 DNA hAT 0 193 7 2 1478 461 342 18 23 chr9 117167870 117168091 -6908081 + B4 SINE B4 1 220 -72 2 1478 1242 109 0 0 chr9 117168114 117168391 -6907781 + (CA)n Simple_repeat Simple_repeat 1 277 0 2 1478 29 0 0 0 chr9 117169074 117169103 -6907069 + AT_rich Low_complexity Low_complexity 1 29 0 2 1478 544 283 97 5 chr9 117169421 117169606 -6906566 - B4A SINE B4 -37 255 54 2 1478 621 172 0 0 chr9 117170850 117171030 -6905142 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1478 263 310 31 26 chr9 117171155 117171296 -6904876 + B4A SINE B4 1 137 -155 3 1478 874 115 11 0 chr9 117171340 117171514 -6904658 + (TC)n Simple_repeat Simple_repeat 1 176 0 3 1478 195 162 0 0 chr9 117172586 117172623 -6903549 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1478 281 278 31 0 chr9 117172626 117172723 -6903449 + (CATA)n Simple_repeat Simple_repeat 3 102 0 3 1478 372 254 0 0 chr9 117172729 117172863 -6903309 + (CA)n Simple_repeat Simple_repeat 1 134 0 3 1478 313 306 0 34 chr9 117172863 117173012 -6903160 + (CATATA)n Simple_repeat Simple_repeat 3 146 0 3 1478 574 180 23 11 chr9 117174524 117174698 -6901474 + CT-rich Low_complexity Low_complexity 3 178 0 3 1478 301 336 67 27 chr9 117174730 117174880 -6901292 - HAL1-3A_ME LINE L1 -419 2439 2284 3 1478 194 156 0 22 chr9 117174887 117174933 -6901239 + CT-rich Low_complexity Low_complexity 3 47 0 3 1478 692 282 52 13 chr9 117175064 117175294 -6900878 - B4 SINE B4 -46 246 8 3 1478 639 118 48 4 chr9 117175902 117176140 -6900032 + (TAGA)n Simple_repeat Simple_repeat 1 248 0 3 1478 303 122 0 0 chr9 117176283 117176332 -6899840 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1478 345 315 36 0 chr9 117176359 117176470 -6899702 - B3A SINE B2 -81 117 3 3 1478 1985 104 19 7 chr9 117176687 117176996 -6899176 + ORR1A4 LTR MaLR 17 329 0 3 1478 996 255 27 133 chr9 117177099 117177506 -6898666 - MTE2a LTR MaLR -14 365 2 3 1478 554 291 45 7 chr9 117177607 117177767 -6898405 - B3A SINE B2 -15 201 36 3 1478 246 114 0 0 chr9 117177770 117177805 -6898367 - L1_Mus2 LINE L1 -933 4950 4916 3 184 7462 74 24 4 chr9 117177802 117179377 -6896795 + L1_Mus2 LINE L1 4961 6566 0 3 1479 4652 146 37 21 chr9 117179678 117180517 -6895655 - Lx2 LINE L1 0 6997 6146 3 1479 788 188 47 12 chr9 117180517 117180689 -6895483 + B2_Mm2 SINE B2 10 187 -8 3 1479 326 342 9 9 chr9 117181136 117181248 -6894924 + ORR1E LTR MaLR 1 112 -247 3 1479 808 285 35 0 chr9 117181248 117181448 -6894724 + B3 SINE B2 1 207 -9 3 1479 708 205 0 0 chr9 117181448 117181604 -6894568 + (TA)n Simple_repeat Simple_repeat 1 156 0 3 1479 831 244 56 12 chr9 117181625 117181874 -6894298 + ORR1E LTR MaLR 100 359 0 3 1479 621 217 0 0 chr9 117182445 117182625 -6893547 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1479 315 370 85 12 chr9 117183580 117183744 -6892428 + B4A SINE B4 115 290 -2 3 1479 457 287 115 75 chr9 117185249 117185528 -6890644 - B4 SINE B4 0 292 3 3 1479 243 339 8 68 chr9 117185858 117185975 -6890197 + PB1D10 SINE Alu 1 110 -7 3 1479 818 225 56 0 chr9 117185986 117186164 -6890008 + B3 SINE B2 1 188 -28 3 1479 24 32 0 0 chr9 117186226 117186257 -6889915 + AT_rich Low_complexity Low_complexity 1 31 0 3 1479 512 296 24 0 chr9 117186774 117186899 -6889273 + ID_B1 SINE B4 86 213 -11 3 1479 207 139 0 0 chr9 117186942 117186978 -6889194 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1479 242 342 0 0 chr9 117186994 117187073 -6889099 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1479 21 71 0 0 chr9 117188895 117188937 -6887235 + AT_rich Low_complexity Low_complexity 1 42 0 3 1479 208 138 0 79 chr9 117188948 117189011 -6887161 + (TTATA)n Simple_repeat Simple_repeat 4 61 0 3 1479 306 238 32 8 chr9 117189021 117189144 -6887028 + (TA)n Simple_repeat Simple_repeat 2 127 0 3 1479 906 228 17 6 chr9 117189193 117189374 -6886798 + B4 SINE B4 87 269 -23 3 1479 354 23 0 0 chr9 117189377 117189420 -6886752 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1479 387 0 0 0 chr9 117190109 117190152 -6886020 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 3 1479 754 214 24 81 chr9 117190158 117190367 -6885805 + B3A SINE B2 2 198 0 3 1479 1155 265 72 14 chr9 117190486 117190831 -6885341 + MTEa LTR MaLR 15 379 0 3 1479 1797 167 50 30 chr9 117191030 117191394 -6884778 - ORR1D1 LTR MaLR 0 374 4 3 1479 593 285 65 4 chr9 117192015 117192244 -6883928 + Lx8 LINE L1 6930 7172 -301 3 1479 408 20 0 0 chr9 117192650 117192699 -6883473 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1479 267 315 0 0 chr9 117193121 117193194 -6882978 + (CGTG)n Simple_repeat Simple_repeat 3 75 0 3 1479 545 312 78 88 chr9 117193196 117193491 -6882681 - B4A SINE B4 0 292 1 3 1479 412 307 84 7 chr9 117194325 117194479 -6881693 + B4A SINE B4 68 233 -59 3 1479 424 256 63 16 chr9 117194486 117194613 -6881559 + RSINE1 SINE B4 33 165 0 3 1479 185 221 0 14 chr9 117194667 117194736 -6881436 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1479 500 223 3 12 chr9 117194775 117195103 -6881069 + (CA)n Simple_repeat Simple_repeat 1 324 0 3 1479 1227 72 0 0 chr9 117195204 117195384 -6880788 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1479 1242 78 0 0 chr9 117195396 117195576 -6880596 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1479 537 68 0 0 chr9 117195590 117195664 -6880508 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1479 1125 78 0 0 chr9 117196531 117196672 -6879500 + B1_Mus1 SINE Alu 1 141 -7 3 1479 336 102 0 0 chr9 117196692 117196741 -6879431 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 3 1479 505 71 60 0 chr9 117196735 117196819 -6879353 + (GAAAA)n Simple_repeat Simple_repeat 4 92 0 3 1479 625 117 9 19 chr9 117196880 117196985 -6879187 - RLTR42-int LTR ERVK -3518 2004 1901 3 1479 2133 149 16 3 chr9 117197199 117197563 -6878609 - MTC LTR MaLR -9 412 44 3 1479 180 0 0 0 chr9 117197596 117197616 -6878556 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1479 933 243 8 46 chr9 117197774 117198011 -6878161 - B4 SINE B4 -22 270 43 3 1479 461 261 42 28 chr9 117197991 117198004 -6878168 + B1F SINE Alu 5 62 -87 3 1479 512 239 0 0 chr9 117198004 117198117 -6878055 + ID_B1 SINE B4 99 211 -13 3 1479 461 261 42 28 chr9 117198117 117198133 -6878039 + B1F SINE Alu 63 148 -1 3 1479 583 143 0 25 chr9 117198923 117199045 -6877127 + GA-rich Low_complexity Low_complexity 2 120 0 3 1479 332 276 36 64 chr9 117199192 117199398 -6876774 - MTE2b LTR MaLR -84 295 106 3 1479 702 173 110 0 chr9 117199406 117199533 -6876639 - B1_Mus2 SINE Alu -5 142 2 3 1479 21 82 0 0 chr9 117199729 117199778 -6876394 + AT_rich Low_complexity Low_complexity 1 49 0 3 1479 189 94 0 0 chr9 117200125 117200157 -6876015 + (TAAAAA)n Simple_repeat Simple_repeat 3 34 0 3 1479 227 310 33 41 chr9 117200339 117200460 -6875712 - L1MC4 LINE L1 -572 7470 7351 3 1479 294 167 82 14 chr9 117200670 117200743 -6875429 - MTC LTR MaLR -14 407 330 3 1479 227 259 0 0 chr9 117200746 117200804 -6875368 + B1F SINE Alu 82 139 -10 3 1479 250 333 147 7 chr9 117200812 117200948 -6875224 + RSINE1 SINE B4 4 158 -7 3 1479 26 0 0 0 chr9 117201174 117201200 -6874972 + AT_rich Low_complexity Low_complexity 1 26 0 3 1479 704 240 77 15 chr9 117201692 117201887 -6874285 + B4A SINE B4 1 207 -85 3 1479 267 31 0 0 chr9 117201958 117201990 -6874182 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1479 226 234 0 69 chr9 117201993 117202080 -6874092 + (CAGAGA)n Simple_repeat Simple_repeat 2 83 0 3 1479 261 0 0 0 chr9 117202080 117202109 -6874063 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 1479 226 234 0 69 chr9 117202109 117202122 -6874050 + (CAGAGA)n Simple_repeat Simple_repeat 6 17 0 3 1479 503 99 63 7 chr9 117202139 117202281 -6873891 + GA-rich Low_complexity Low_complexity 1 150 0 3 1479 413 248 19 29 chr9 117202696 117202800 -6873372 + B1_Mur1 SINE Alu 46 148 -1 3 1479 271 354 18 0 chr9 117202986 117203099 -6873073 + PB1D7 SINE Alu 6 120 0 3 1479 247 353 35 57 chr9 117203561 117203702 -6872470 + B4 SINE B4 3 140 -152 3 1479 285 98 0 0 chr9 117203840 117203881 -6872291 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1479 466 228 238 37 chr9 117204185 117204318 -6871854 + B3A SINE B2 1 168 -30 3 1479 333 0 0 0 chr9 117204318 117204355 -6871817 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1479 466 228 238 37 chr9 117204355 117204385 -6871787 + B3A SINE B2 169 197 -1 3 1479 512 269 55 52 chr9 117204988 117205185 -6870987 + MLT1E2 LTR MaLR 14 214 -291 3 1479 320 276 133 0 chr9 117205336 117205434 -6870738 + MLT1E2 LTR MaLR 308 418 -209 3 1479 1481 226 99 7 chr9 117205479 117205894 -6870278 - Lx9 LINE L1 -13 7631 7179 3 1479 207 242 0 0 chr9 117205966 117206028 -6870144 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1479 324 335 11 28 chr9 117206078 117206259 -6869913 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 3 1479 383 314 5 40 chr9 117206198 117206571 -6869601 + (TATG)n Simple_repeat Simple_repeat 1 359 0 3 1479 389 315 11 27 chr9 117206459 117206642 -6869530 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 3 1479 268 324 27 14 chr9 117206822 117206969 -6869203 - L3b LINE CR1 -222 260 112 3 1479 838 241 90 26 chr9 117207467 117207701 -6868471 + B4A SINE B4 2 250 -42 3 1479 552 89 0 0 chr9 117207710 117207789 -6868383 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1479 267 406 45 34 chr9 117208189 117208454 -6867718 + MamSINE1 SINE tRNA 21 288 -2 3 1479 276 91 0 0 chr9 117208895 117208939 -6867233 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1479 284 309 0 0 chr9 117209276 117209360 -6866812 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1479 605 256 95 104 chr9 117209380 117209611 -6866561 - B4 SINE B4 -63 229 1 3 1479 266 329 0 0 chr9 117210772 117210848 -6865324 - ID4 SINE ID 0 83 8 3 1479 345 47 0 0 chr9 117211205 117211248 -6864924 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1479 487 202 87 0 chr9 117211252 117211356 -6864816 - RSINE1 SINE B4 -45 120 8 3 1479 736 195 0 0 chr9 117211865 117211993 -6864179 + B3A SINE B2 1 128 -70 3 1479 207 0 0 0 chr9 117211993 117212016 -6864156 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1479 519 139 0 0 chr9 117212019 117212120 -6864052 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 1479 245 288 122 29 chr9 117212381 117212553 -6863619 + L1MD3 LINE L1 4539 4726 -1420 3 1479 226 306 46 0 chr9 117212782 117212890 -6863282 + L1MD3 LINE L1 4903 5015 -1131 3 1479 260 239 210 7 chr9 117212909 117213052 -6863120 + Lx8 LINE L1 7274 7445 -28 3 1479 239 299 42 35 chr9 117213111 117213253 -6862919 + L1MC LINE L1 5087 5229 -917 3 1479 1480 230 53 53 chr9 117213292 117213886 -6862286 - RLTR26 LTR ERVK -13 629 6 4 1479 268 312 54 41 chr9 117214157 117214304 -6861868 + L1MD3 LINE L1 5532 5680 -484 3 1479 182 37 0 36 chr9 117214317 117214345 -6861827 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 4 1479 603 251 52 61 chr9 117214345 117214655 -6861517 + L1MD3 LINE L1 5677 5983 -2012 3 1479 22 0 0 0 chr9 117214784 117214806 -6861366 + AT_rich Low_complexity Low_complexity 1 22 0 4 1479 552 308 38 6 chr9 117215690 117215850 -6860322 + RSINE1 SINE B4 1 165 0 4 1479 354 61 0 0 chr9 117215853 117215902 -6860270 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1479 476 216 52 81 chr9 117216780 117216916 -6859256 - ID_B1 SINE B4 0 224 93 4 1479 743 212 0 6 chr9 117216919 117217399 -6858773 + (CA)n Simple_repeat Simple_repeat 1 476 0 4 1479 441 0 0 0 chr9 117218253 117218302 -6857870 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1479 21 0 0 0 chr9 117218343 117218364 -6857808 + AT_rich Low_complexity Low_complexity 1 21 0 4 1479 306 206 0 0 chr9 117218376 117218449 -6857723 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1479 644 230 12 47 chr9 117218449 117218618 -6857554 - B3A SINE B2 -16 182 20 4 1479 357 24 0 0 chr9 117218787 117218829 -6857343 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 4 1479 743 213 141 5 chr9 117219039 117219223 -6856949 - B3 SINE B2 -7 209 1 4 1479 25 31 0 0 chr9 117219447 117219479 -6856693 + AT_rich Low_complexity Low_complexity 1 32 0 4 1479 661 269 57 80 chr9 117219583 117219846 -6856326 - MTD LTR MaLR -15 404 148 4 1479 1236 35 14 0 chr9 117219863 117220008 -6856164 + B1_Mm SINE Alu 1 147 0 4 1479 261 116 0 42 chr9 117220008 117220080 -6856092 + A-rich Low_complexity Low_complexity 1 69 0 4 1479 26 0 0 0 chr9 117220318 117220344 -6855828 + AT_rich Low_complexity Low_complexity 1 26 0 4 1479 280 315 67 27 chr9 117220686 117220836 -6855336 - MIR SINE MIR -99 163 8 4 1479 1800 152 51 12 chr9 117220912 117221246 -6854926 + MTC LTR MaLR 4 350 -71 4 1479 307 279 37 28 chr9 117221709 117221816 -6854356 - RSINE1 SINE B4 -56 109 2 4 1479 571 219 15 30 chr9 117222053 117222185 -6853987 + ID_B1 SINE B4 95 224 0 4 1479 243 217 0 0 chr9 117222279 117222339 -6853833 + A-rich Low_complexity Low_complexity 1 60 0 4 1479 21 0 0 0 chr9 117222668 117222689 -6853483 + AT_rich Low_complexity Low_complexity 1 21 0 4 1479 297 0 0 0 chr9 117223030 117223063 -6853109 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1479 417 240 0 0 chr9 117223316 117223470 -6852702 + (TG)n Simple_repeat Simple_repeat 1 154 0 4 1479 857 273 57 25 chr9 117223485 117223767 -6852405 - B4A SINE B4 0 292 2 4 1479 293 233 27 0 chr9 117223775 117223848 -6852324 - B1F SINE Alu -7 142 68 4 1479 236 313 0 0 chr9 117223854 117223921 -6852251 - ID_B1 SINE B4 -27 197 131 4 1479 1186 49 0 0 chr9 117224976 117225119 -6851053 + B1_Mus1 SINE Alu 5 147 -1 4 1479 202 87 43 0 chr9 117225119 117225165 -6851007 + (CAA)n Simple_repeat Simple_repeat 1 48 0 4 1479 824 275 156 24 chr9 117226027 117226355 -6849817 + MTEb LTR MaLR 5 375 -4 4 1479 207 179 0 0 chr9 117226790 117226829 -6849343 + (ATGGTG)n Simple_repeat Simple_repeat 1 39 0 4 1479 231 88 0 0 chr9 117226886 117226920 -6849252 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1479 249 33 0 0 chr9 117227006 117227036 -6849136 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 4 1479 274 329 24 0 chr9 117227058 117227143 -6849029 - B4A SINE B4 -184 108 22 4 1479 554 318 66 33 chr9 117228215 117228488 -6847684 + B4A SINE B4 7 288 -4 4 1479 245 254 18 0 chr9 117228502 117228557 -6847615 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1479 315 0 0 0 chr9 117229047 117229082 -6847090 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1479 856 278 95 4 chr9 117229227 117229469 -6846703 + B4 SINE B4 25 288 -4 4 1479 741 275 20 67 chr9 117230988 117231288 -6844884 - B4A SINE B4 -2 290 5 4 1479 219 69 0 0 chr9 117231558 117231587 -6844585 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 4 1479 1018 101 0 60 chr9 117231587 117231755 -6844417 - B2_Mm2 SINE B2 -36 159 2 4 1479 37878 55 7 2 chr9 117231880 117238188 -6837984 - L1Md_F2 LINE L1 -3 6582 166 4 1479 22 0 0 0 chr9 117238233 117238255 -6837917 + AT_rich Low_complexity Low_complexity 1 22 0 4 1479 189 68 22 43 chr9 117239761 117239807 -6836365 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1479 1292 218 109 24 chr9 117239824 117240200 -6835972 + MTD LTR MaLR 12 419 0 4 1479 231 233 73 62 chr9 117240827 117240923 -6835249 + MTE2b LTR MaLR 1 97 -282 4 1479 327 287 121 9 chr9 117240924 117241040 -6835132 + MTE2b LTR MaLR 59 187 -192 4 1479 612 247 49 112 chr9 117241011 117241316 -6834856 + MTEa LTR MaLR 94 379 0 4 1479 394 297 31 25 chr9 117242153 117242315 -6833857 + MLT1J1 LTR MaLR 65 227 -217 4 1479 849 133 6 12 chr9 117242420 117242580 -6833592 + CT-rich Low_complexity Low_complexity 2 160 0 4 1479 248 77 26 0 chr9 117242581 117242620 -6833552 + (TCC)n Simple_repeat Simple_repeat 2 41 0 4 1479 216 0 0 0 chr9 117243348 117243372 -6832800 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 1479 243 0 0 0 chr9 117243372 117243398 -6832774 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1479 259 227 80 0 chr9 117243436 117243511 -6832661 - B4 SINE B4 -211 81 1 4 1479 884 217 58 19 chr9 117244766 117244973 -6831199 + B3 SINE B2 2 216 0 4 1479 259 375 97 22 chr9 117245147 117245414 -6830758 + B4A SINE B4 2 288 -4 4 1479 241 218 18 0 chr9 117245519 117245574 -6830598 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1479 714 284 25 0 chr9 117245723 117245920 -6830252 - ID_B1 SINE B4 -8 216 15 4 1479 410 0 0 20 chr9 117246572 117246623 -6829549 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1479 435 19 0 0 chr9 117246625 117246677 -6829495 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1479 364 281 131 8 chr9 117246784 117246906 -6829266 + B1F1 SINE Alu 6 142 -7 4 1479 299 277 79 56 chr9 117246968 117247016 -6829156 - Lx8 LINE L1 -348 7125 7083 4 1479 2379 202 4 172 chr9 117247016 117247750 -6828422 - RMER19C LTR ERVK 0 611 1 4 1479 299 277 79 56 chr9 117247750 117247827 -6828345 - Lx8 LINE L1 -391 7082 6997 4 1479 758 294 111 14 chr9 117247826 117248106 -6828066 + Lx8 LINE L1 7120 7426 -47 4 1479 457 305 63 50 chr9 117248221 117248380 -6827792 - B4 SINE B4 -131 161 1 4 1479 25 65 0 0 chr9 117248642 117248688 -6827484 + AT_rich Low_complexity Low_complexity 1 46 0 4 1479 396 0 0 0 chr9 117249188 117249232 -6826940 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1479 266 278 174 9 chr9 117249392 117249501 -6826671 + ID_B1 SINE B4 92 218 -6 4 1479 209 312 12 38 chr9 117249507 117249587 -6826585 + (CCAA)n Simple_repeat Simple_repeat 2 79 0 4 1479 220 232 17 35 chr9 117250721 117250779 -6825393 + PB1D9 SINE Alu 3 59 -61 4 1479 255 308 104 7 chr9 117250898 117251042 -6825130 + MTE-int LTR MaLR 287 444 -1136 4 1479 823 207 0 0 chr9 117251167 117251312 -6824860 + B3 SINE B2 1 145 -71 4 1479 342 0 0 0 chr9 117251312 117251350 -6824822 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1479 538 261 72 67 chr9 117251350 117251397 -6824775 + B2_Mm2 SINE B2 135 194 -1 4 1479 965 382 44 44 chr9 117251508 117252318 -6823854 + MTE-int LTR MaLR 752 1561 -19 4 1479 251 314 75 32 chr9 117252784 117253064 -6823108 + L1M2 LINE L1 2173 2464 -4385 4 1479 342 205 271 8 chr9 117253895 117254013 -6822159 + B3A SINE B2 1 149 -49 4 1479 240 35 0 0 chr9 117254017 117254046 -6822126 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1479 199 0 0 61 chr9 117254055 117254088 -6822084 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 4 1479 378 0 0 0 chr9 117254310 117254352 -6821820 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1479 316 308 137 3 chr9 117254449 117254628 -6821544 - MLT1G LTR MaLR -172 423 228 4 1479 243 0 0 0 chr9 117255229 117255256 -6820916 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1479 296 289 12 0 chr9 117255436 117255519 -6820653 - MER94 DNA AcHobo -2 132 49 4 1479 625 157 52 15 chr9 117255672 117255808 -6820364 - URR1A DNA MER1_type -4 222 82 4 1479 446 227 72 24 chr9 117255854 117256029 -6820143 - MTE2a LTR MaLR -14 405 230 4 1479 279 253 101 57 chr9 117256119 117256278 -6819894 - MTE2a LTR MaLR -211 168 3 4 1479 4088 26 46 8 chr9 117256459 117256960 -6819212 + L1Md_F2 LINE L1 6061 6580 -2 4 1479 545 335 33 70 chr9 117256972 117257370 -6818802 + MLT1D LTR MaLR 123 505 0 4 1479 965 278 29 0 chr9 117259049 117259326 -6816846 + B4 SINE B4 1 285 -7 4 1479 2072 167 99 5 chr9 117259442 117259827 -6816345 + MTC LTR MaLR 1 421 0 4 1479 354 338 20 27 chr9 117260344 117260493 -6815679 - ID_B1 SINE B4 -54 170 23 4 1479 384 256 11 0 chr9 117262918 117263008 -6813164 + B4A SINE B4 1 91 -201 4 1479 434 18 18 0 chr9 117263368 117263423 -6812749 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1479 1274 237 24 40 chr9 117264375 117264704 -6811468 + Lx8 LINE L1 6736 7059 -414 4 1479 1659 264 31 14 chr9 117264725 117265171 -6811001 + Lx8 LINE L1 7018 7471 -2 4 1479 26 0 0 0 chr9 117265171 117265197 -6810975 + AT_rich Low_complexity Low_complexity 1 26 0 4 1479 334 360 52 5 chr9 117265199 117265411 -6810761 + L1ME2 LINE L1 5709 5930 -234 4 1479 1266 227 40 7 chr9 117265436 117265737 -6810435 + Lx7 LINE L1 7153 7463 -233 4 1479 186 43 0 0 chr9 117265767 117265790 -6810382 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1479 297 280 20 0 chr9 117265795 117265895 -6810277 + Lx7 LINE L1 7595 7696 0 4 1479 270 364 14 14 chr9 117265986 117266131 -6810041 + L1ME2 LINE L1 6020 6164 0 4 1479 767 228 100 15 chr9 117266533 117266733 -6809439 + ID_B1 SINE B4 1 217 -7 4 1479 239 0 32 0 chr9 117267466 117267497 -6808675 + (CTTAT)n Simple_repeat Simple_repeat 3 34 0 4 1479 652 234 130 21 chr9 117267848 117268019 -6808153 + B3 SINE B2 1 196 -20 4 1479 654 37 0 0 chr9 117268019 117268100 -6808072 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 1479 652 234 130 21 chr9 117268100 117268120 -6808052 + B3 SINE B2 197 213 -3 4 1479 490 252 15 30 chr9 117268240 117268375 -6807797 - RMER15 LTR ERVL -97 478 346 5 1479 348 275 33 0 chr9 117269803 117269894 -6806278 + ID_B1 SINE B4 116 209 -15 5 1479 211 155 51 17 chr9 117269899 117269958 -6806214 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 5 1479 294 236 83 0 chr9 117269961 117270033 -6806139 + PB1D7 SINE Alu 40 117 -3 5 1479 189 0 0 0 chr9 117270208 117270229 -6805943 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1479 285 29 0 0 chr9 117270229 117270262 -6805910 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1479 717 204 0 0 chr9 117270286 117270443 -6805729 + (TA)n Simple_repeat Simple_repeat 2 158 0 5 1479 396 314 16 8 chr9 117271311 117271436 -6804736 + B4A SINE B4 1 126 -166 5 1479 1938 150 74 6 chr9 117271442 117271805 -6804367 - MTC LTR MaLR -8 413 26 5 1479 232 340 27 45 chr9 117271844 117271955 -6804217 + B4A SINE B4 126 234 -58 5 1479 204 143 0 0 chr9 117272020 117272062 -6804110 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 5 1479 543 284 0 49 chr9 117272690 117272853 -6803319 + RSINE1 SINE B4 11 165 0 5 1479 325 214 10 10 chr9 117272858 117272957 -6803215 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 1479 31 68 0 0 chr9 117273137 117273196 -6802976 + AT_rich Low_complexity Low_complexity 1 59 0 5 1479 805 285 14 54 chr9 117273256 117273534 -6802638 - B4 SINE B4 -2 290 24 5 1479 217 306 32 0 chr9 117273483 117273545 -6802627 - ID2 SINE ID -10 73 10 5 1479 229 309 36 27 chr9 117274239 117274384 -6801788 - L2a LINE L2 0 3426 3234 5 1479 315 0 0 0 chr9 117275498 117275533 -6800639 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1479 1140 247 97 8 chr9 117275614 117275965 -6800207 - MTD LTR MaLR -20 399 18 5 1479 354 203 81 0 chr9 117275980 117276054 -6800118 - MER58A DNA MER1_type -144 80 1 5 1479 210 37 0 0 chr9 117276534 117276561 -6799611 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 5 1479 4251 257 22 61 chr9 117276562 117277449 -6798723 - RMER1C Other Other -10 1332 451 5 1479 294 29 0 0 chr9 117277449 117277484 -6798688 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1479 4251 257 22 61 chr9 117277484 117277745 -6798427 - RMER1C Other Other -892 450 229 5 1479 3661 67 2 10 chr9 117277745 117278226 -6797946 - L1Md_F2 LINE L1 0 6582 6106 5 1479 3841 273 29 62 chr9 117278226 117278459 -6797713 - RMER1C Other Other -1114 228 117 5 1479 314 23 23 0 chr9 117278472 117278515 -6797657 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1479 517 285 62 56 chr9 117278519 117278679 -6797493 - B4 SINE B4 -76 216 56 5 1479 829 250 19 19 chr9 117279198 117279414 -6796758 - B3 SINE B2 0 216 1 5 1479 320 117 33 0 chr9 117280069 117280109 -6796063 + (GGAGAA)n Simple_repeat Simple_repeat 3 42 0 5 1479 984 129 0 22 chr9 117280109 117280291 -6795881 + GA-rich Low_complexity Low_complexity 2 179 0 5 1479 320 117 33 0 chr9 117280291 117280310 -6795862 + (GGAGAA)n Simple_repeat Simple_repeat 1 21 0 5 1479 787 89 71 12 chr9 117280310 117280480 -6795692 + GA-rich Low_complexity Low_complexity 1 180 0 5 1479 834 240 0 11 chr9 117280519 117280700 -6795472 + B4 SINE B4 45 223 -69 5 1479 351 227 34 76 chr9 117280726 117280845 -6795327 + B3 SINE B2 3 116 -100 5 1479 270 0 0 0 chr9 117280847 117280877 -6795295 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1479 306 0 0 0 chr9 117280877 117280910 -6795262 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1479 432 37 0 0 chr9 117280910 117280963 -6795209 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1479 417 329 70 73 chr9 117282520 117282864 -6793308 + MLT1E LTR MaLR 211 553 -100 5 1479 204 132 36 36 chr9 117283054 117283109 -6793063 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1479 488 237 0 23 chr9 117283109 117283286 -6792886 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 5 1479 606 193 6 12 chr9 117283250 117283423 -6792749 + (TG)n Simple_repeat Simple_repeat 2 173 0 5 1479 322 204 23 0 chr9 117283827 117283915 -6792257 + CT-rich Low_complexity Low_complexity 1 90 0 5 1479 267 31 0 0 chr9 117284082 117284114 -6792058 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1479 366 100 0 0 chr9 117286337 117286397 -6789775 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1479 397 244 87 24 chr9 117286410 117286536 -6789636 - B3A SINE B2 -48 150 17 5 1479 252 0 0 0 chr9 117286997 117287025 -6789147 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1479 453 143 30 10 chr9 117287023 117287122 -6789050 + GA-rich Low_complexity Low_complexity 5 105 0 5 1479 708 273 136 52 chr9 117287764 117288015 -6788157 + B4 SINE B4 1 272 -20 5 1479 423 0 0 0 chr9 117288074 117288121 -6788051 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1479 378 0 0 0 chr9 117288308 117288350 -6787822 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1479 286 224 49 73 chr9 117289641 117289723 -6786449 + MER58A DNA MER1_type 7 86 -138 5 1479 533 300 117 16 chr9 117290421 117290678 -6785494 - B4 SINE B4 -3 289 7 5 1479 3441 40 2 0 chr9 117291443 117291838 -6784334 - MTA_Mm LTR MaLR 0 396 1 5 1479 516 139 7 44 chr9 117291838 117291973 -6784199 + CT-rich Low_complexity Low_complexity 3 132 0 5 1479 586 245 6 25 chr9 117292130 117292293 -6783879 + RSINE1 SINE B4 2 161 -4 5 1479 300 70 0 0 chr9 117292434 117292477 -6783695 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1479 474 293 128 38 chr9 117293112 117293378 -6782794 + B4A SINE B4 2 291 -1 5 1479 353 209 53 26 chr9 117293678 117293830 -6782342 + (TATATG)n Simple_repeat Simple_repeat 6 161 0 5 1479 407 261 219 5 chr9 117293892 117294088 -6782084 - B4A SINE B4 -53 239 2 5 1479 664 293 69 33 chr9 117294453 117294480 -6781692 - B4 SINE B4 0 292 265 5 1479 2031 198 39 20 chr9 117294480 117294888 -6781284 - MTC LTR MaLR -2 419 4 5 1479 664 293 69 33 chr9 117294888 117295135 -6781037 - B4 SINE B4 -28 264 9 5 1479 503 290 64 10 chr9 117296107 117296309 -6779863 + B3 SINE B2 4 216 0 5 1479 202 319 14 0 chr9 117296445 117296517 -6779655 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1479 584 302 31 0 chr9 117296572 117296794 -6779378 - B4 SINE B4 -63 229 1 5 1479 531 43 0 0 chr9 117296860 117296930 -6779242 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1479 1063 192 40 15 chr9 117297607 117297808 -6778364 + B3 SINE B2 1 206 -10 5 1479 556 162 0 17 chr9 117298639 117298669 -6777503 + polypurine Low_complexity Low_complexity 3 31 0 5 1479 1053 150 0 0 chr9 117298669 117298849 -6777323 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 1479 556 162 0 17 chr9 117298849 117298937 -6777235 + polypurine Low_complexity Low_complexity 32 118 0 5 1479 461 230 206 0 chr9 117298976 117299102 -6777070 + B3A SINE B2 21 172 -26 5 1479 25 51 0 0 chr9 117299177 117299216 -6776956 + AT_rich Low_complexity Low_complexity 1 39 0 5 1479 585 200 18 0 chr9 117299833 117299943 -6776229 - B1_Mur1 SINE Alu -13 136 25 5 1479 263 303 0 13 chr9 117301066 117301143 -6775029 + ID4_ SINE ID 5 80 -3 5 1479 205 258 62 0 chr9 117301145 117301242 -6774930 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 5 1479 220 200 14 14 chr9 117301288 117301359 -6774813 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 5 1479 223 232 24 0 chr9 117301487 117301569 -6774603 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 5 1479 470 241 45 0 chr9 117302211 117302323 -6773849 - B3 SINE B2 -99 117 1 5 1479 432 0 0 0 chr9 117302969 117303017 -6773155 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1479 531 277 189 14 chr9 117303880 117304224 -6771948 - Lx9 LINE L1 -14 7630 7227 5 1479 360 20 35 112 chr9 117304260 117304430 -6771742 + (GTTTG)n Simple_repeat Simple_repeat 4 160 0 5 1479 210 176 57 38 chr9 117304453 117304506 -6771666 - PB1D10 SINE Alu 0 117 64 5 1479 719 273 38 33 chr9 117304459 117304671 -6771501 - ID_B1 SINE B4 -4 220 8 5 1479 720 289 50 12 chr9 117305250 117305509 -6770663 + B4 SINE B4 2 270 -22 5 1479 206 325 0 24 chr9 117305529 117305611 -6770561 + (CATA)n Simple_repeat Simple_repeat 2 81 0 5 1479 665 261 110 0 chr9 117306113 117306331 -6769841 + MTEa LTR MaLR 4 245 -134 5 1479 340 186 216 0 chr9 117306434 117306531 -6769641 + MTEa LTR MaLR 237 354 -25 5 1479 531 31 0 0 chr9 117308179 117308244 -6767928 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1479 336 276 78 47 chr9 117308682 117308811 -6767361 + RMER5 LTR ERV1 33 165 -369 5 1479 384 238 0 0 chr9 117308836 117308941 -6767231 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 1480 405 39 0 0 chr9 117309969 117310020 -6766152 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1480 224 182 0 57 chr9 117310540 117310610 -6765562 + (TTATA)n Simple_repeat Simple_repeat 3 68 0 5 1480 970 246 62 53 chr9 117310687 117311043 -6765129 + ORR1E LTR MaLR 1 359 0 5 1480 4973 25 62 5 chr9 117312540 117313135 -6763037 + L1Md_F2 LINE L1 5953 6581 -1 5 1480 733 319 15 33 chr9 117314574 117314846 -6761326 - B4A SINE B4 -6 286 20 5 1480 362 239 333 6 chr9 117315596 117315764 -6760408 + ID_B1 SINE B4 2 224 0 5 1480 281 122 45 45 chr9 117315769 117315881 -6760291 + A-rich Low_complexity Low_complexity 2 113 0 5 1480 468 268 164 22 chr9 117315891 117316074 -6760098 + B4A SINE B4 2 210 -82 5 1480 261 0 0 0 chr9 117316079 117316108 -6760064 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1480 248 130 22 0 chr9 117317495 117317541 -6758631 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 5 1480 440 184 10 0 chr9 117317774 117317877 -6758295 + GA-rich Low_complexity Low_complexity 4 107 0 5 1480 1145 187 5 5 chr9 117318037 117318247 -6757925 - B3 SINE B2 -5 211 2 5 1480 244 292 79 24 chr9 117318414 117318579 -6757593 + L1MA5 LINE L1 5751 5924 -376 5 1480 512 342 15 10 chr9 117318641 117318842 -6757330 + ID_B1 SINE B4 21 222 -2 5 1480 430 288 31 61 chr9 117320572 117320735 -6755437 + B4 SINE B4 127 284 -8 6 1480 540 0 0 0 chr9 117320752 117320812 -6755360 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1480 351 0 0 0 chr9 117320812 117320851 -6755321 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1480 584 217 6 68 chr9 117321006 117321169 -6755003 - B3A SINE B2 -6 192 40 6 1480 22 0 0 0 chr9 117322057 117322079 -6754093 + AT_rich Low_complexity Low_complexity 1 22 0 6 1480 777 147 0 0 chr9 117322194 117322364 -6753808 + (TC)n Simple_repeat Simple_repeat 1 170 0 6 1480 717 326 64 32 chr9 117322405 117322811 -6753361 - Lx9 LINE L1 -268 7376 6958 6 1480 359 130 68 21 chr9 117322822 117323058 -6753114 + (TG)n Simple_repeat Simple_repeat 1 246 0 6 1480 433 113 39 32 chr9 117323112 117323267 -6752905 + (TG)n Simple_repeat Simple_repeat 1 156 0 6 1480 311 107 71 0 chr9 117323299 117323355 -6752817 - HAL1-3A_ME LINE L1 -831 2027 1968 6 1480 520 257 34 14 chr9 117323389 117323427 -6752745 - RSINE1 SINE B4 -1 164 127 6 1480 627 92 39 19 chr9 117323427 117323583 -6752589 + (TG)n Simple_repeat Simple_repeat 2 160 0 6 1480 520 257 34 14 chr9 117323583 117323690 -6752482 - RSINE1 SINE B4 -39 126 16 6 1480 279 0 0 0 chr9 117323989 117324020 -6752152 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1480 323 78 20 0 chr9 117324607 117324658 -6751514 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1480 725 288 22 97 chr9 117324691 117325002 -6751170 - B4A SINE B4 -2 290 3 6 1480 910 303 107 60 chr9 117325569 117326120 -6750052 + Lx8 LINE L1 6862 7438 -35 6 1480 217 336 101 29 chr9 117326670 117326808 -6749364 + B4A SINE B4 1 148 -144 6 1480 234 242 97 0 chr9 117326763 117326825 -6749347 + PB1D10 SINE Alu 19 86 -31 6 1480 432 324 22 0 chr9 117327100 117327236 -6748936 + B1F1 SINE Alu 1 139 -10 6 1480 1370 156 4 26 chr9 117327418 117327648 -6748524 - URR1B DNA MER1_type 0 225 1 6 1480 424 263 106 63 chr9 117327795 117328002 -6748170 - B3 SINE B2 0 216 1 6 1480 308 309 71 39 chr9 117328165 117328320 -6747852 - MLT1A1 LTR MaLR -195 213 54 6 1480 348 309 157 6 chr9 117328472 117328638 -6747534 - MTE2b LTR MaLR -188 191 1 6 1480 273 190 17 0 chr9 117328638 117328695 -6747477 + ID_B1 SINE B4 158 215 -9 6 1480 579 29 0 0 chr9 117329246 117329315 -6746857 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1480 369 308 151 16 chr9 117329663 117329914 -6746258 + B4 SINE B4 2 286 -6 6 1480 432 0 0 0 chr9 117329941 117329989 -6746183 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1480 301 180 0 0 chr9 117330449 117330499 -6745673 - HAL1-3A_ME LINE L1 -833 2025 1976 6 1480 630 236 0 0 chr9 117330774 117331010 -6745162 + CT-rich Low_complexity Low_complexity 1 236 0 6 1480 183 277 0 0 chr9 117331415 117331462 -6744710 - MIR SINE MIR -140 122 76 6 1480 633 269 54 10 chr9 117331911 117332114 -6744058 + RLTR45 LTR ERVK 271 482 0 6 1480 252 231 0 49 chr9 117332101 117332183 -6743989 + B3 SINE B2 4 81 -135 6 1480 583 264 82 15 chr9 117332123 117332319 -6743853 + B4A SINE B4 24 232 -60 6 1480 388 335 42 23 chr9 117333218 117333435 -6742737 - B4A SINE B4 -52 240 20 6 1480 243 0 0 0 chr9 117333646 117333673 -6742499 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1480 341 354 56 32 chr9 117333751 117333967 -6742205 + MER58A DNA MER1_type 1 221 -3 6 1480 743 274 37 9 chr9 117334183 117334397 -6741775 + ID_B1 SINE B4 3 222 -2 6 1480 220 305 30 50 chr9 117335117 117335217 -6740955 + B2_Mm2 SINE B2 4 101 -94 6 1480 546 270 93 39 chr9 117335867 117336071 -6740101 + B3A SINE B2 2 216 0 6 1480 204 40 0 0 chr9 117336407 117336432 -6739740 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 6 1480 509 212 20 0 chr9 117337375 117337474 -6738698 - MTE2b LTR MaLR -264 115 15 6 1480 1232 272 100 5 chr9 117337664 117338034 -6738138 - MTD LTR MaLR -14 405 1 6 1480 320 176 0 14 chr9 117339505 117339574 -6736598 + (CAA)n Simple_repeat Simple_repeat 2 69 0 6 1480 542 226 143 7 chr9 117339669 117339816 -6736356 + B4 SINE B4 21 187 -105 6 1480 561 124 0 0 chr9 117339827 117339924 -6736248 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 6 1480 235 373 11 34 chr9 117340000 117340175 -6735997 + (CATG)n Simple_repeat Simple_repeat 4 174 0 6 1480 304 361 8 0 chr9 117340001 117340131 -6736041 + (CA)n Simple_repeat Simple_repeat 2 132 0 6 1480 471 18 0 0 chr9 117340176 117340232 -6735940 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1480 447 269 9 9 chr9 117341678 117341794 -6734378 + PB1D10 SINE Alu 1 116 -1 6 1480 342 333 41 33 chr9 117341831 117341952 -6734220 + RSINE1 SINE B4 24 145 -20 6 1480 299 96 0 19 chr9 117341953 117342006 -6734166 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1480 923 280 74 26 chr9 117342829 117343141 -6733031 + Lx8 LINE L1 7144 7470 -3 6 1480 1094 250 124 9 chr9 117343383 117343714 -6732458 + MTEa LTR MaLR 8 376 -3 6 1480 452 231 107 0 chr9 117344140 117344261 -6731911 + MTEb LTR MaLR 122 255 -124 6 1480 2357 113 3 0 chr9 117344476 117344802 -6731370 - ORR1A2 LTR MaLR 0 327 1 6 1480 504 0 0 0 chr9 117345311 117345367 -6730805 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1480 186 281 0 0 chr9 117346435 117346499 -6729673 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1480 390 309 141 79 chr9 117346505 117346792 -6729380 - B4 SINE B4 -8 284 7 6 1480 189 0 0 0 chr9 117348596 117348617 -6727555 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1480 267 262 131 0 chr9 117348709 117348816 -6727356 + MLT1I LTR MaLR 291 411 0 6 1480 271 273 110 73 chr9 117349060 117349260 -6726912 - ORR1E LTR MaLR -166 208 4 6 1480 379 252 0 20 chr9 117349260 117349358 -6726814 + PB1D10 SINE Alu 22 117 0 6 1480 275 271 77 86 chr9 117349695 117349812 -6726360 - PB1D10 SINE Alu -1 116 1 6 1480 975 115 0 0 chr9 117349824 117349972 -6726200 + (TA)n Simple_repeat Simple_repeat 1 148 0 6 1480 772 261 5 38 chr9 117350084 117350295 -6725877 - B3 SINE B2 -11 205 2 6 1480 360 0 0 0 chr9 117350306 117350346 -6725826 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1480 405 0 0 0 chr9 117350346 117350390 -6725782 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1480 271 253 46 92 chr9 117350834 117350943 -6725229 + B3A SINE B2 92 195 -3 6 1480 295 218 12 71 chr9 117351342 117351426 -6724746 - ID4 SINE ID -2 81 3 6 1480 338 0 0 23 chr9 117352196 117352239 -6723933 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 6 1480 332 175 0 0 chr9 117352437 117352494 -6723678 + PB1D7 SINE Alu 2 58 -62 6 1480 360 77 0 0 chr9 117353205 117353257 -6722915 + (CCA)n Simple_repeat Simple_repeat 1 52 0 6 1480 444 299 0 0 chr9 117353273 117353370 -6722802 + B4 SINE B4 107 203 -89 6 1480 332 167 14 0 chr9 117353384 117353456 -6722716 + G-rich Low_complexity Low_complexity 3 75 0 6 1480 394 328 78 46 chr9 117354994 117355275 -6720897 - B4A SINE B4 0 292 3 6 1480 330 67 0 0 chr9 117355537 117355582 -6720590 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1480 352 360 92 15 chr9 117355630 117355892 -6720280 - B4A SINE B4 -6 286 5 6 1480 477 127 0 0 chr9 117356550 117356629 -6719543 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1480 441 280 66 7 chr9 117356710 117356861 -6719311 - B4A SINE B4 -131 161 2 6 1480 261 229 236 39 chr9 117357768 117357895 -6718277 + B4 SINE B4 1 152 -140 6 1480 862 254 74 7 chr9 117358321 117358591 -6717581 + B4A SINE B4 1 288 -4 6 1480 206 143 29 0 chr9 117358609 117358644 -6717528 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1480 417 39 0 0 chr9 117359013 117359064 -6717108 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1480 4442 83 13 65 chr9 117359133 117359905 -6716267 + RMER17A LTR ERVK 4 735 -16 6 1480 252 0 0 0 chr9 117359937 117359965 -6716207 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1480 905 156 0 0 chr9 117359965 117360100 -6716072 - B1_Mus1 SINE Alu -12 136 2 6 1480 248 303 34 0 chr9 117360381 117360470 -6715702 + RSINE1 SINE B4 2 93 -72 6 1480 217 331 98 41 chr9 117360911 117361034 -6715138 + MIRb SINE MIR 68 197 -71 6 1480 279 79 0 0 chr9 117361663 117361701 -6714471 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1480 403 100 14 14 chr9 117362638 117362709 -6713463 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 1480 231 170 57 0 chr9 117362834 117362887 -6713285 - B3 SINE B2 -10 206 151 6 1480 274 152 0 0 chr9 117362908 117362954 -6713218 - B3A SINE B2 -152 46 1 6 1480 823 250 24 14 chr9 117363302 117363513 -6712659 - B3 SINE B2 -2 214 2 6 1480 277 311 51 15 chr9 117364521 117364658 -6711514 + L1MDa LINE L1 120 261 -6372 6 1480 346 248 28 9 chr9 117365090 117365196 -6710976 - MLT2B3 LTR ERVL -445 109 2 6 1480 3183 62 0 0 chr9 117365216 117365618 -6710554 - L1_Mm LINE L1 -1460 4423 4022 6 1480 1166 33 0 0 chr9 117365613 117365748 -6710424 + L1_Mm LINE L1 5447 5586 -297 6 1480 8282 44 2 2 chr9 117365748 117366744 -6709428 + L1Md_F2 LINE L1 5587 6582 0 6 1480 891 160 0 7 chr9 117366744 117366759 -6709413 + L1_Mm LINE L1 5581 5595 -282 6 1480 630 287 133 47 chr9 117366895 117367429 -6708743 + L1MD2 LINE L1 1640 2219 -4414 6 1480 240 336 18 0 chr9 117367591 117367701 -6708471 + L1MD2 LINE L1 4302 4413 -2124 6 1480 477 110 0 0 chr9 117367706 117367779 -6708393 + (CAGA)n Simple_repeat Simple_repeat 4 76 0 6 1480 627 281 0 68 chr9 117367786 117367945 -6708227 - Lx8 LINE L1 -536 6937 6789 6 1480 1423 90 11 0 chr9 117367945 117368134 -6708038 + B2_Mm1t SINE B2 2 192 -1 6 1480 627 281 0 68 chr9 117368134 117368180 -6707992 - Lx8 LINE L1 -685 6788 6746 6 1480 1058 295 122 32 chr9 117368238 117369351 -6706821 + L1MD2 LINE L1 5014 6224 -526 6 1480 393 71 43 0 chr9 117369352 117369422 -6706750 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 6 1480 498 17 0 0 chr9 117369547 117369606 -6706566 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 7 1480 1027 267 82 37 chr9 117370354 117370708 -6705464 - MTEb LTR MaLR -9 370 1 7 1480 458 307 63 56 chr9 117371564 117371834 -6704338 - B4A SINE B4 -18 274 4 7 1480 449 34 17 0 chr9 117372392 117372451 -6703721 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1480 468 316 55 22 chr9 117372470 117372651 -6703521 - B4 SINE B4 0 292 106 7 1480 3027 182 42 16 chr9 117372660 117373382 -6702790 - Lx4B LINE L1 -28 6948 6217 7 1480 724 256 63 19 chr9 117373908 117374115 -6702057 - ID_B1 SINE B4 -8 216 1 7 1480 300 304 50 42 chr9 117374819 117374939 -6701233 + ID_B1 SINE B4 95 215 -9 7 1480 877 171 11 0 chr9 117375231 117375503 -6700669 + CT-rich Low_complexity Low_complexity 1 275 0 7 1480 852 101 53 9 chr9 117375526 117375866 -6700306 + (TG)n Simple_repeat Simple_repeat 1 354 0 7 1480 776 286 30 54 chr9 117375879 117375890 -6700282 - B4 SINE B4 -2 290 280 7 1480 838 71 58 6 chr9 117375890 117376061 -6700111 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1480 776 286 30 54 chr9 117376061 117376345 -6699827 - B4 SINE B4 -13 279 2 7 1480 1678 195 96 40 chr9 117376507 117376903 -6699269 - MTD LTR MaLR 0 419 2 7 1480 604 282 47 26 chr9 117377605 117377798 -6698374 + B3A SINE B2 1 197 -1 7 1480 325 222 49 12 chr9 117379088 117379170 -6697002 - L1MB1 LINE L1 -217 5951 5867 7 1480 735 251 31 5 chr9 117379181 117379373 -6696799 - MTE2b LTR MaLR -11 368 172 7 1480 333 310 53 15 chr9 117379442 117379573 -6696599 - RSINE1 SINE B4 -15 150 15 7 1480 479 233 80 7 chr9 117379578 117379729 -6696443 - MTE2b LTR MaLR -196 183 22 7 1480 468 0 0 0 chr9 117379824 117379876 -6696296 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1480 218 325 86 17 chr9 117379946 117380062 -6696110 - B3A SINE B2 -73 125 2 7 1480 438 300 108 67 chr9 117380126 117380256 -6695916 - L1M4 LINE L1 -2836 3310 3155 7 1480 306 0 0 0 chr9 117380256 117380290 -6695882 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1480 438 300 108 67 chr9 117380290 117380456 -6695716 - L1M4 LINE L1 -2992 3154 3003 7 1480 891 333 65 24 chr9 117381203 117381662 -6694510 + Lx8 LINE L1 6796 7273 -200 7 1480 731 250 162 12 chr9 117383199 117383267 -6692905 + B4 SINE B4 9 80 -212 7 1480 312 27 0 0 chr9 117383267 117383304 -6692868 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 7 1480 731 250 162 12 chr9 117383304 117383482 -6692690 + B4 SINE B4 81 291 -1 7 1480 265 286 0 0 chr9 117383486 117383678 -6692494 + (CA)n Simple_repeat Simple_repeat 1 192 0 7 1480 709 170 9 0 chr9 117384766 117384986 -6691186 + CT-rich Low_complexity Low_complexity 1 222 0 7 1480 225 310 138 0 chr9 117385382 117385469 -6690703 - RSINE1 SINE B4 -22 143 45 7 1480 597 307 18 5 chr9 117386084 117386303 -6689869 + ID_B1 SINE B4 1 222 -2 7 1480 252 86 0 0 chr9 117386500 117386535 -6689637 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1480 281 24 0 47 chr9 117386535 117386578 -6689594 + (TATG)n Simple_repeat Simple_repeat 2 42 0 7 1480 21 0 0 0 chr9 117386634 117386655 -6689517 + AT_rich Low_complexity Low_complexity 1 21 0 7 1480 759 171 78 87 chr9 117386845 117387018 -6689154 + B3 SINE B2 1 179 -37 7 1480 641 199 81 0 chr9 117387018 117387154 -6689018 + B1_Mur1 SINE Alu 2 148 -1 7 1480 759 171 78 87 chr9 117387154 117387198 -6688974 + B3 SINE B2 180 216 0 7 1480 894 89 52 25 chr9 117387256 117387483 -6688689 + RMER6A LTR ERVK 1 270 -486 7 1480 642 168 48 8 chr9 117387480 117387606 -6688566 + RMER6A LTR ERVK 626 756 0 7 1480 577 293 120 26 chr9 117387750 117388016 -6688156 + B4A SINE B4 2 292 0 7 1480 319 292 30 127 chr9 117388528 117388576 -6687596 + B1F1 SINE Alu 1 149 0 7 1480 418 217 17 94 chr9 117388576 117388693 -6687479 + ID_B1 SINE B4 117 224 0 7 1480 425 111 28 0 chr9 117388703 117388775 -6687397 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 7 1480 1391 213 143 11 chr9 117389051 117389421 -6686751 - MTC LTR MaLR -2 419 1 7 1480 385 280 11 0 chr9 117390415 117390508 -6685664 - PB1D7 SINE Alu -17 103 10 7 1480 275 279 0 0 chr9 117390850 117390911 -6685261 - B4A SINE B4 -6 286 226 7 1480 297 125 0 0 chr9 117390918 117390974 -6685198 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1480 279 197 16 0 chr9 117390978 117391039 -6685133 - Lx9 LINE L1 -1 7643 7582 7 1480 306 89 22 0 chr9 117391031 117391076 -6685096 - Lx9 LINE L1 -167 7477 7432 7 1480 427 318 39 0 chr9 117391130 117391284 -6684888 - B4A SINE B4 -62 230 71 7 1480 316 146 10 155 chr9 117391294 117391391 -6684781 + RLTR21 LTR ERVK 1490 1572 0 7 1480 305 284 21 76 chr9 117391391 117391493 -6684679 - B4A SINE B4 -195 97 4 7 1480 1378 245 29 16 chr9 117392177 117392562 -6683610 + L1MC3 LINE L1 6781 7170 -615 7 1480 255 336 0 63 chr9 117393036 117393147 -6683025 + PB1D10 SINE Alu 4 107 -10 7 1480 970 34 22 38 chr9 117393288 117393471 -6682701 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1480 269 138 31 0 chr9 117393473 117393538 -6682634 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 7 1480 871 252 24 9 chr9 117393591 117393803 -6682369 + B3 SINE B2 2 216 0 7 1480 519 321 67 19 chr9 117393855 117394122 -6682050 + B4 SINE B4 13 292 0 7 1480 210 333 0 0 chr9 117394127 117394190 -6681982 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1480 297 258 21 11 chr9 117394242 117394336 -6681836 + MTD LTR MaLR 27 121 -298 7 1480 249 180 0 0 chr9 117394746 117394796 -6681376 + (CTG)n Simple_repeat Simple_repeat 1 50 0 7 1480 507 60 0 0 chr9 117395378 117395445 -6680727 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1480 620 241 46 46 chr9 117395509 117395748 -6680424 - B4A SINE B4 -52 240 2 7 1480 284 306 37 9 chr9 117396073 117396182 -6679990 + (CATG)n Simple_repeat Simple_repeat 3 114 0 7 1480 867 102 0 0 chr9 117396183 117396320 -6679852 + (TG)n Simple_repeat Simple_repeat 1 137 0 7 1480 295 300 50 0 chr9 117396776 117396856 -6679316 + B4A SINE B4 1 84 -208 7 1480 405 58 0 0 chr9 117397094 117397146 -6679026 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1480 675 110 32 13 chr9 117397311 117397468 -6678704 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 7 1480 643 186 13 0 chr9 117397479 117397635 -6678537 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 7 1480 882 278 39 36 chr9 117398146 117398426 -6677746 - B4A SINE B4 -4 288 8 7 1480 546 254 22 7 chr9 117398481 117398616 -6677556 + MER5A1 DNA MER1_type 19 155 -11 7 1480 809 247 6 0 chr9 117398851 117399009 -6677163 + B3A SINE B2 6 164 -34 7 1480 919 284 54 26 chr9 117399393 117399743 -6676429 - MTE2a LTR MaLR 0 379 20 7 1480 192 97 0 0 chr9 117400877 117400908 -6675264 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1480 383 202 31 0 chr9 117400908 117401037 -6675135 + GA-rich Low_complexity Low_complexity 2 134 0 7 1480 516 179 182 54 chr9 117401065 117401213 -6674959 - B3 SINE B2 -49 167 1 7 1480 845 69 22 44 chr9 117402554 117402737 -6673435 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1480 21 0 0 0 chr9 117403492 117403513 -6672659 + AT_rich Low_complexity Low_complexity 1 21 0 7 1480 462 222 32 49 chr9 117403738 117403861 -6672311 + RSINE1 SINE B4 45 165 0 7 1480 743 233 66 141 chr9 117403927 117404247 -6671925 + MTEa LTR MaLR 82 377 -2 7 1480 724 276 113 12 chr9 117405086 117405343 -6670829 + MTD LTR MaLR 1 283 -136 7 1480 1027 274 36 39 chr9 117405835 117406249 -6669923 + L1M2 LINE L1 4914 5326 -817 7 1480 497 261 49 0 chr9 117406469 117406611 -6669561 + Lx8 LINE L1 6963 7111 -362 7 1480 288 77 0 0 chr9 117406631 117406670 -6669502 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1480 272 27 27 0 chr9 117406670 117406707 -6669465 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1480 1147 250 24 32 chr9 117406785 117407157 -6669015 + L1M2 LINE L1 5394 5762 -529 7 1480 470 329 13 19 chr9 117407366 117407521 -6668651 + RSINE1 SINE B4 12 165 0 7 1480 449 127 0 12 chr9 117407552 117407632 -6668540 + (TAA)n Simple_repeat Simple_repeat 2 80 0 7 1480 208 139 0 0 chr9 117407723 117407759 -6668413 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 7 1480 679 179 6 6 chr9 117408707 117408887 -6667285 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1480 186 171 0 0 chr9 117408905 117408946 -6667226 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1480 808 266 6 10 chr9 117408946 117409161 -6667011 - B3A SINE B2 -12 204 1 7 1480 216 0 0 0 chr9 117409485 117409509 -6666663 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1480 858 251 71 17 chr9 117409859 117410155 -6666017 - L1_Mur3 LINE L1 -482 5398 5087 7 1480 307 344 8 16 chr9 117410172 117410296 -6665876 + MTEa LTR MaLR 1 123 -256 7 1480 1513 169 222 82 chr9 117410190 117410641 -6665531 + MT2A LTR ERVL 20 533 0 7 1480 460 239 55 0 chr9 117410654 117410763 -6665409 - L1_Mur3 LINE L1 -820 5060 4946 7 1480 378 0 0 0 chr9 117411142 117411184 -6664988 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1480 265 316 44 81 chr9 117411335 117411481 -6664691 + Lx8 LINE L1 7194 7329 -144 7 1480 428 0 19 0 chr9 117411481 117411533 -6664639 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 7 1480 265 316 44 81 chr9 117411533 117411658 -6664514 + Lx8 LINE L1 7330 7455 -18 7 1480 18814 97 58 15 chr9 117411703 117417518 -6658654 - L1Md_F2 LINE L1 -12 6570 101 7 1480 312 309 74 0 chr9 117417611 117417760 -6658412 - MER3 DNA MER1_type -49 160 1 7 1480 384 283 0 39 chr9 117418584 117418687 -6657485 + RSINE1 SINE B4 39 137 -28 7 1480 295 318 30 15 chr9 117420202 117420333 -6655839 - B4A SINE B4 -157 135 3 7 1480 441 0 0 0 chr9 117421865 117421914 -6654258 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1480 405 0 0 0 chr9 117421914 117421958 -6654214 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1480 621 233 35 81 chr9 117421974 117422147 -6654025 - B4 SINE B4 -6 286 122 7 1480 465 314 12 50 chr9 117422176 117422337 -6653835 - B4 SINE B4 -137 155 1 7 1480 281 276 56 72 chr9 117423159 117423339 -6652833 + MLT1B LTR MaLR 27 203 -187 7 1480 394 331 0 22 chr9 117423690 117423826 -6652346 + GA-rich Low_complexity Low_complexity 3 135 0 8 1480 22 0 0 0 chr9 117424513 117424535 -6651637 + AT_rich Low_complexity Low_complexity 1 22 0 8 1480 351 0 0 0 chr9 117424649 117424688 -6651484 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1480 799 256 30 20 chr9 117424850 117425053 -6651119 - B4 SINE B4 -86 206 2 8 1480 605 285 66 81 chr9 117425692 117426024 -6650148 - MTEa LTR MaLR -1 378 52 8 1480 288 318 28 9 chr9 117425977 117426085 -6650087 - MLT2B3 LTR ERVL -444 110 1 8 1480 1068 270 63 20 chr9 117426430 117426778 -6649394 - MLT1B LTR MaLR -27 363 1 8 1480 280 259 55 41 chr9 117427073 117427218 -6648954 + L1M4 LINE L1 22 168 -6374 8 1480 574 152 64 104 chr9 117427626 117427751 -6648421 + B1_Mus1 SINE Alu 1 120 0 8 1480 496 209 180 39 chr9 117428057 117428358 -6647814 - MTE2b LTR MaLR -13 366 1 8 1480 349 339 77 11 chr9 117428494 117428821 -6647351 + L1MB5 LINE L1 5803 6163 -15 8 1480 335 181 0 3 chr9 117429389 117429453 -6646719 + ID4 SINE ID 14 75 -77 8 1480 1053 66 0 0 chr9 117430209 117430360 -6645812 + (CA)n Simple_repeat Simple_repeat 1 151 0 8 1480 735 327 50 0 chr9 117430720 117430980 -6645192 + B4 SINE B4 1 273 -19 8 1480 333 0 0 0 chr9 117430988 117431025 -6645147 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1480 360 0 0 0 chr9 117431025 117431064 -6645108 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 1480 245 279 57 81 chr9 117431442 117431562 -6644610 + B1F SINE Alu 33 149 -1 8 1480 782 188 6 0 chr9 117431770 117431935 -6644237 + GA-rich Low_complexity Low_complexity 2 167 0 8 1480 298 346 60 23 chr9 117431969 117432185 -6643987 + L1MCb LINE L1 111 334 -5711 8 1480 403 301 10 0 chr9 117432587 117432690 -6643482 + B1F2 SINE Alu 7 110 -39 8 1480 418 182 0 29 chr9 117432705 117432807 -6643365 + GA-rich Low_complexity Low_complexity 2 100 0 8 1480 487 269 69 49 chr9 117432980 117433226 -6642946 + L1MCb LINE L1 761 1011 -5034 8 1480 579 217 54 0 chr9 117433890 117434019 -6642153 - Lx9 LINE L1 -456 7188 7053 8 1480 733 249 24 96 chr9 117434055 117434304 -6641868 - Lx9 LINE L1 -563 7081 6851 8 1480 868 288 8 11 chr9 117434302 117434562 -6641610 + Lx9 LINE L1 7219 7477 -167 8 1480 297 0 0 0 chr9 117434573 117434606 -6641566 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1480 2804 236 37 79 chr9 117434720 117435664 -6640508 - RMER17B LTR ERVK -54 904 1 8 1480 408 250 182 24 chr9 117435664 117435873 -6640299 + L1MCb LINE L1 1882 2123 -4628 8 1480 1144 289 43 14 chr9 117435964 117436332 -6639840 + MTEa LTR MaLR 1 379 0 8 1480 300 219 34 25 chr9 117436548 117436666 -6639506 + L1MCb LINE L1 2613 2729 -3829 8 1480 574 303 21 0 chr9 117436787 117436932 -6639240 + B3A SINE B2 7 154 -44 8 1480 324 0 0 0 chr9 117436932 117436968 -6639204 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1480 360 0 0 0 chr9 117437036 117437076 -6639096 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1480 260 336 16 31 chr9 117437683 117437812 -6638360 + MIR3 SINE MIR 54 180 -28 8 1480 324 0 0 0 chr9 117438325 117438361 -6637811 + (TTATA)n Simple_repeat Simple_repeat 2 37 0 8 1480 897 259 41 75 chr9 117439216 117439606 -6636566 - MTE2a LTR MaLR -15 404 17 8 1480 1133 296 34 28 chr9 117439915 117440269 -6635903 + ORR1D2 LTR MaLR 14 369 -1 8 1481 633 95 0 21 chr9 117440604 117440701 -6635471 + B1_Mus2 SINE Alu 53 147 0 8 1481 204 111 0 0 chr9 117440707 117440743 -6635429 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 8 1481 450 0 0 0 chr9 117442324 117442374 -6633798 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1481 23 68 0 0 chr9 117442433 117442477 -6633695 + AT_rich Low_complexity Low_complexity 1 44 0 8 1481 489 34 0 0 chr9 117442767 117442826 -6633346 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1481 1015 156 32 0 chr9 117443065 117443251 -6632921 - URR1A DNA MER1_type 0 226 35 8 1481 528 291 52 162 chr9 117443446 117443872 -6632300 + MTE2a LTR MaLR 1 379 0 8 1481 325 241 8 8 chr9 117444906 117445040 -6631132 + (TG)n Simple_repeat Simple_repeat 1 134 0 8 1481 399 312 0 90 chr9 117445040 117445195 -6630977 - B4A SINE B4 0 292 152 8 1481 383 268 0 0 chr9 117445344 117445426 -6630746 - B1_Mur1 SINE Alu -26 123 42 8 1481 375 0 0 163 chr9 117445429 117445632 -6630540 + (CTCTG)n Simple_repeat Simple_repeat 1 170 0 8 1481 476 259 20 73 chr9 117445632 117445782 -6630390 - B4A SINE B4 -150 142 1 8 1481 2130 240 181 25 chr9 117446347 117447019 -6629153 + RMER1C Other Other 564 1340 -2 8 1481 378 227 21 77 chr9 117447450 117447593 -6628579 + L1MC3 LINE L1 6452 6586 -1199 8 1481 234 310 14 0 chr9 117447641 117447712 -6628460 - ID4 SINE ID -2 81 10 8 1481 326 324 58 6 chr9 117447720 117447894 -6628278 - L1M2 LINE L1 -510 5781 5599 8 1481 790 240 33 5 chr9 117447895 117448079 -6628093 - B3 SINE B2 -3 213 25 8 1481 2145 200 65 48 chr9 117448085 117448611 -6627561 - Lx7 LINE L1 -503 7193 6659 8 1481 220 342 13 0 chr9 117448612 117448691 -6627481 - B4 SINE B4 -207 85 6 8 1481 623 270 56 15 chr9 117448721 117448988 -6627184 - L1M2 LINE L1 -753 5390 5113 8 1481 668 282 24 33 chr9 117450872 117451085 -6625087 + ID_B1 SINE B4 3 213 -11 8 1481 297 0 0 0 chr9 117451097 117451130 -6625042 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1481 351 0 0 0 chr9 117451441 117451480 -6624692 + (TA)n Simple_repeat Simple_repeat 2 40 0 8 1481 492 18 0 0 chr9 117452420 117452477 -6623695 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1481 310 310 35 26 chr9 117452587 117452605 -6623567 - RSINE1 SINE B4 -2 163 148 8 1481 387 60 0 0 chr9 117452605 117452655 -6623517 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1481 310 310 35 26 chr9 117452655 117452752 -6623420 - RSINE1 SINE B4 -18 147 47 8 1481 243 146 0 0 chr9 117453843 117453884 -6622288 + (GGGAGA)n Simple_repeat Simple_repeat 3 43 0 8 1481 852 136 12 6 chr9 117453889 117454052 -6622120 + GA-rich Low_complexity Low_complexity 2 165 0 8 1481 26 0 0 0 chr9 117454535 117454561 -6621611 + AT_rich Low_complexity Low_complexity 1 26 0 8 1481 315 279 199 0 chr9 117454732 117454893 -6621279 - Tigger7 DNA MER2_type 0 2491 2299 8 1481 935 228 78 7 chr9 117454969 117455234 -6620938 - MTD LTR MaLR -162 257 1 8 1481 796 144 0 62 chr9 117455350 117455542 -6620630 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1481 180 0 0 0 chr9 117455617 117455637 -6620535 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1481 575 261 111 48 chr9 117455683 117455953 -6620219 - B4A SINE B4 -2 290 4 8 1481 60 73 0 0 chr9 117456396 117456519 -6619653 + AT_rich Low_complexity Low_complexity 1 123 0 8 1481 539 181 135 45 chr9 117456525 117456658 -6619514 - B1_Mur3 SINE Alu 0 149 5 8 1481 305 345 94 25 chr9 117457204 117457406 -6618766 + MLT1E1 LTR MaLR 427 642 -12 8 1481 325 189 0 51 chr9 117458362 117458440 -6617732 + L1_Mur3 LINE L1 1660 1733 -4147 8 1481 693 358 50 42 chr9 117458573 117458955 -6617217 - MLT1E1A LTR MaLR -2 678 294 8 1481 210 344 0 0 chr9 117459008 117459069 -6617103 - PB1D7 SINE Alu -59 61 1 8 1481 1304 99 22 0 chr9 117459309 117459491 -6616681 - B2_Mm2 SINE B2 -8 187 2 8 1481 624 358 46 21 chr9 117460780 117461108 -6615064 + MER2 DNA MER2_type 3 338 -7 8 1481 1014 290 94 28 chr9 117461161 117461643 -6614529 + MT2A LTR ERVL 1 596 -5 8 1481 390 335 16 49 chr9 117462073 117462258 -6613914 + B4A SINE B4 1 179 -113 8 1481 360 146 34 0 chr9 117462360 117462449 -6613723 + (CA)n Simple_repeat Simple_repeat 1 92 0 8 1481 741 221 194 29 chr9 117462684 117462700 -6613472 - B4A SINE B4 -10 282 271 8 1481 547 60 24 0 chr9 117462700 117462784 -6613388 + (TG)n Simple_repeat Simple_repeat 1 86 0 8 1481 741 221 194 29 chr9 117462784 117463009 -6613163 - B4A SINE B4 -22 270 1 8 1481 218 236 0 40 chr9 117463125 117463200 -6612972 + CT-rich Low_complexity Low_complexity 2 73 0 8 1481 451 289 154 5 chr9 117463975 117464170 -6612002 + ID_B1 SINE B4 1 224 0 8 1481 542 294 79 21 chr9 117464171 117464411 -6611761 + MER2 DNA MER2_type 86 339 -6 8 1481 533 242 0 6 chr9 117464638 117464804 -6611368 + (TG)n Simple_repeat Simple_repeat 2 166 0 8 1481 472 258 36 41 chr9 117464863 117465057 -6611115 - B3A SINE B2 -2 196 4 8 1481 293 288 50 0 chr9 117466604 117466684 -6609488 + PB1D10 SINE Alu 19 102 -15 8 1481 252 143 0 0 chr9 117466693 117466735 -6609437 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 8 1481 287 176 20 0 chr9 117466739 117466790 -6609382 + B3A SINE B2 97 148 -50 8 1481 189 0 0 0 chr9 117466793 117466814 -6609358 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1481 939 18 0 0 chr9 117466814 117466922 -6609250 + (GA)n Simple_repeat Simple_repeat 2 110 0 8 1481 372 285 85 89 chr9 117466922 117467157 -6609015 - B4A SINE B4 -49 243 10 8 1481 243 0 0 0 chr9 117467474 117467501 -6608671 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1481 465 304 7 13 chr9 117468363 117468489 -6607683 + polypyrimidine Low_complexity Low_complexity 28 152 0 8 1481 1205 85 6 0 chr9 117468489 117468665 -6607507 + (TCC)n Simple_repeat Simple_repeat 2 178 0 8 1481 465 304 7 13 chr9 117468665 117468688 -6607484 + polypyrimidine Low_complexity Low_complexity 5 27 0 8 1481 378 231 17 17 chr9 117468697 117468869 -6607303 + CT-rich Low_complexity Low_complexity 3 174 0 8 1481 28 29 0 0 chr9 117468916 117468951 -6607221 + AT_rich Low_complexity Low_complexity 1 35 0 8 1481 348 329 94 0 chr9 117470845 117470994 -6605178 - ID_B1 SINE B4 -9 215 53 8 1481 1956 109 26 0 chr9 117470998 117471311 -6604861 + ORR1A4 LTR MaLR 1 321 -8 8 1481 268 315 0 0 chr9 117471367 117471440 -6604732 + CT-rich Low_complexity Low_complexity 3 75 0 8 1481 296 250 0 13 chr9 117471440 117471517 -6604655 - B1_Mus2 SINE Alu -55 92 17 8 1481 450 289 108 24 chr9 117472454 117472667 -6603505 + B4A SINE B4 1 231 -61 8 1481 198 232 17 35 chr9 117475901 117476017 -6600155 + GA-rich Low_complexity Low_complexity 3 116 0 8 1481 213 200 17 52 chr9 117476029 117476087 -6600085 + GA-rich Low_complexity Low_complexity 2 57 0 8 1481 1096 268 58 52 chr9 117476685 117476975 -6599197 + ORR1D2 LTR MaLR 7 301 -69 9 1481 351 0 0 0 chr9 117476975 117477014 -6599158 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1481 656 173 69 23 chr9 117477015 117477145 -6599027 - B1_Mus1 SINE Alu -12 136 1 9 1481 1096 268 58 52 chr9 117477145 117477214 -6598958 + ORR1D2 LTR MaLR 302 370 0 9 1481 467 146 27 18 chr9 117477320 117477432 -6598740 + (CATA)n Simple_repeat Simple_repeat 2 114 0 9 1481 378 61 0 0 chr9 117478329 117478378 -6597794 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1481 369 0 0 0 chr9 117478378 117478418 -6597754 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 1481 276 342 0 67 chr9 117478419 117478538 -6597634 - ID_B1 SINE B4 -33 191 81 9 1481 610 355 16 12 chr9 117479404 117479652 -6596520 - B4 SINE B4 0 292 44 9 1481 656 304 70 27 chr9 117480264 117480521 -6595651 - B4A SINE B4 -21 271 4 9 1481 1275 154 22 31 chr9 117480829 117481057 -6595115 + URR1A DNA MER1_type 1 226 0 9 1481 230 306 118 24 chr9 117481273 117481400 -6594772 - B1F SINE Alu 0 149 11 9 1481 642 235 103 23 chr9 117481287 117481461 -6594711 - ID_B1 SINE B4 -19 205 18 9 1481 1060 279 64 15 chr9 117482363 117482705 -6593467 - MTE2a LTR MaLR -2 377 19 9 1481 1390 237 9 37 chr9 117483714 117484038 -6592134 + MTE2b LTR MaLR 3 317 -62 9 1481 1050 282 8 0 chr9 117484350 117484616 -6591556 + B4A SINE B4 1 268 -24 9 1481 498 17 0 0 chr9 117484626 117484685 -6591487 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1481 226 250 23 23 chr9 117484922 117485008 -6591164 - MIRc SINE MIR -110 158 73 9 1481 445 185 0 0 chr9 117485873 117485954 -6590218 - B3A SINE B2 -115 83 3 9 1481 786 325 5 0 chr9 117486362 117486574 -6589598 + ID_B1 SINE B4 1 213 -11 9 1481 275 0 29 0 chr9 117487254 117487289 -6588883 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 9 1481 410 330 22 40 chr9 117487734 117487970 -6588202 + MLT1A0 LTR MaLR 116 379 -29 9 1481 424 370 52 0 chr9 117488070 117488281 -6587891 + ERVL-E-int LTR ERVL 1331 1552 -4115 9 1481 394 352 32 32 chr9 117488456 117488641 -6587531 + RMER30 DNA MER1_type 11 195 -7 9 1481 297 348 37 7 chr9 117488651 117488787 -6587385 + ERVL-E-int LTR ERVL 3061 3200 -2557 9 1481 340 200 31 0 chr9 117488852 117488917 -6587255 - Lx6 LINE L1 -650 6810 6744 9 1481 774 230 38 57 chr9 117488935 117489147 -6587025 + Lx6 LINE L1 7242 7449 -11 9 1481 425 314 79 49 chr9 117490251 117490556 -6585616 - Charlie16a DNA MER1_type -26 316 3 9 1481 192 246 62 0 chr9 117490670 117490735 -6585437 + MER5A DNA MER1_type 4 72 -117 9 1481 632 313 55 18 chr9 117490738 117491011 -6585161 + B4A SINE B4 2 284 -8 9 1481 503 265 12 62 chr9 117491926 117492087 -6584085 + RSINE1 SINE B4 4 156 -9 9 1481 299 340 6 80 chr9 117492210 117492386 -6583786 + RSINE1 SINE B4 3 165 0 9 1481 441 0 0 0 chr9 117492392 117492441 -6583731 + (TAA)n Simple_repeat Simple_repeat 1 49 0 9 1481 370 275 38 29 chr9 117492688 117492793 -6583379 - B1_Mm SINE Alu -41 106 1 9 1481 567 176 28 97 chr9 117493571 117493716 -6582456 - B1_Mus2 SINE Alu 0 147 13 9 1481 921 243 5 30 chr9 117494039 117494260 -6581912 + Lx9 LINE L1 6159 6509 -1135 9 1481 4046 208 49 11 chr9 117494267 117495157 -6581015 + Lx9 LINE L1 6713 7636 -8 9 1481 860 237 52 66 chr9 117496009 117496025 -6580147 + Lx9 LINE L1 6933 6946 -698 9 1481 1722 196 57 43 chr9 117496025 117496259 -6579913 + ORR1D1 LTR MaLR 1 243 -131 9 1481 1151 24 59 5 chr9 117496259 117496684 -6579488 + (CCTG)n Simple_repeat Simple_repeat 1 447 0 9 1481 1722 196 57 43 chr9 117496684 117496815 -6579357 + ORR1D1 LTR MaLR 244 371 -3 9 1481 860 237 52 66 chr9 117496815 117497069 -6579103 + Lx9 LINE L1 6947 7199 -445 9 1481 3445 25 8 0 chr9 117498067 117498460 -6577712 - MTA_Mm LTR MaLR 0 396 1 9 1481 266 349 68 53 chr9 117498587 117498850 -6577322 + MER46C DNA MER2_type 25 291 -47 9 1481 386 250 107 102 chr9 117498898 117499094 -6577078 + B3A SINE B2 2 198 0 9 1481 560 337 72 21 chr9 117499255 117499673 -6576499 + ORSL-2b DNA Tip100 1 439 -69 9 1481 214 241 0 0 chr9 117500478 117500532 -6575640 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1481 230 286 0 14 chr9 117502296 117502367 -6573805 + ID4_ SINE ID 1 70 -13 2 1481 22 56 0 0 chr9 117502573 117502609 -6573563 + AT_rich Low_complexity Low_complexity 1 36 0 3 1481 278 324 9 36 chr9 117502761 117502873 -6573299 + B4 SINE B4 1 109 -183 4 1481 414 0 0 0 chr9 117503066 117503112 -6573060 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1481 1100 242 53 44 chr9 117504981 117505322 -6570850 - ORR1E LTR MaLR -15 344 1 6 1481 441 259 167 22 chr9 117505719 117505857 -6570315 + RSINE1 SINE B4 2 159 -6 7 1481 919 232 14 42 chr9 117508969 117509185 -6566987 - B3 SINE B2 -4 212 3 8 1481 324 0 0 0 chr9 117511447 117511483 -6564689 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1481 481 301 184 9 chr9 117511494 117511720 -6564452 - B4A SINE B4 -21 271 6 1 1481 552 77 0 0 chr9 117511979 117512050 -6564122 + B1_Mur4 SINE Alu 71 141 -9 1 1481 207 0 0 0 chr9 117512050 117512073 -6564099 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1481 938 124 0 7 chr9 117512083 117512237 -6563935 + (GAAA)n Simple_repeat Simple_repeat 2 154 0 1 1481 2906 153 125 91 chr9 117512263 117513025 -6563147 - RMER19B LTR ERVK -114 788 1 1 1481 1309 201 91 14 chr9 117514921 117515354 -6560818 - RMER15 LTR ERVL 0 575 65 1 1481 786 22 0 0 chr9 117515418 117515510 -6560662 + (GA)n Simple_repeat Simple_repeat 1 92 0 1 1481 446 359 18 32 chr9 117515514 117515796 -6560376 + B4A SINE B4 2 279 -13 1 1481 279 0 0 0 chr9 117517123 117517154 -6559018 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1 1481 595 230 188 17 chr9 117517332 117517513 -6558659 - B3 SINE B2 -3 213 2 1 1481 281 244 15 131 chr9 117517641 117517778 -6558394 + RSINE1 SINE B4 2 122 -43 2 1481 249 33 0 0 chr9 117517785 117517815 -6558357 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1481 471 95 0 0 chr9 117518714 117518788 -6557384 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1481 362 214 0 28 chr9 117518788 117518860 -6557312 + B3 SINE B2 57 126 -90 2 1481 441 0 0 0 chr9 117518862 117518911 -6557261 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1481 411 21 0 0 chr9 117518911 117518958 -6557214 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1481 1191 48 0 7 chr9 117519013 117519150 -6557022 + B1_Mus1 SINE Alu 2 138 -10 2 1481 210 37 0 0 chr9 117519150 117519177 -6556995 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1481 520 237 77 43 chr9 117519971 117520178 -6555994 - RMER15 LTR ERVL -3 572 359 2 1481 372 22 0 0 chr9 117520948 117520993 -6555179 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1481 2173 200 16 188 chr9 117521116 117521854 -6554318 + RMER19C LTR ERVK 1 611 0 3 1481 180 194 0 0 chr9 117522209 117522240 -6553932 + MIR3 SINE MIR 129 159 -49 3 1481 493 52 26 0 chr9 117522498 117522575 -6553597 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1481 407 294 0 0 chr9 117522695 117522797 -6553375 - B3A SINE B2 -91 107 6 3 1481 633 282 56 23 chr9 117522774 117522988 -6553184 - B4A SINE B4 -68 224 4 3 1481 455 207 11 0 chr9 117525587 117525674 -6550498 + B3 SINE B2 1 88 -128 3 1481 34814 77 10 20 chr9 117525681 117531598 -6544574 - L1Md_F2 LINE L1 -336 6246 391 3 1481 699 234 0 0 chr9 117531604 117531775 -6544397 + T-rich Low_complexity Low_complexity 4 174 0 3 1481 278 132 43 29 chr9 117532424 117532494 -6543678 + RMER15 LTR ERVL 47 117 -458 3 1481 1499 166 32 3 chr9 117532532 117532816 -6543356 + RMER15 LTR ERVL 237 528 -47 3 1481 2258 207 70 23 chr9 117532820 117533378 -6542794 - RLTR31A_Mm LTR ERVK 0 584 1 3 1481 713 281 50 94 chr9 117533412 117533710 -6542462 + B4 SINE B4 8 292 0 4 1481 448 178 9 9 chr9 117534480 117534588 -6541584 + (TG)n Simple_repeat Simple_repeat 1 108 0 4 1481 612 198 18 12 chr9 117534632 117534796 -6541376 + (TATATG)n Simple_repeat Simple_repeat 1 165 0 4 1481 841 266 76 33 chr9 117534798 117535074 -6541098 - B4 SINE B4 0 292 5 4 1481 206 173 48 48 chr9 117535439 117535542 -6540630 + (TA)n Simple_repeat Simple_repeat 1 103 0 4 1481 202 328 6 33 chr9 117535500 117535680 -6540492 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 4 1481 986 291 68 3 chr9 117536033 117536371 -6539801 + MTEa LTR MaLR 20 379 0 4 1481 249 157 20 0 chr9 117536449 117536500 -6539672 - MER5A1 DNA MER1_type -79 87 36 4 1481 182 171 24 0 chr9 117537028 117537069 -6539103 + GA-rich Low_complexity Low_complexity 3 44 0 4 1481 334 296 15 46 chr9 117537511 117537642 -6538530 + B3A SINE B2 90 216 0 4 1481 1170 86 0 0 chr9 117537757 117537981 -6538191 + (TG)n Simple_repeat Simple_repeat 1 224 0 5 1481 24 0 0 0 chr9 117539302 117539326 -6536846 + AT_rich Low_complexity Low_complexity 1 24 0 5 1481 628 286 21 39 chr9 117539496 117539729 -6536443 + B4 SINE B4 64 292 0 5 1481 423 0 0 0 chr9 117540104 117540151 -6536021 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1481 543 246 155 17 chr9 117540522 117540696 -6535476 + B3A SINE B2 1 198 0 5 1481 671 65 0 0 chr9 117540739 117540832 -6535340 - BC1_Mm scRNA scRNA -59 93 1 5 1481 1604 215 29 3 chr9 117541030 117541380 -6534792 - MTD LTR MaLR -15 404 46 5 1481 508 287 119 41 chr9 117541745 117542014 -6534158 + B4A SINE B4 3 292 0 5 1481 321 26 0 0 chr9 117542478 117542516 -6533656 + (CGGGGG)n Simple_repeat Simple_repeat 5 42 0 5 1481 385 311 53 30 chr9 117543703 117543968 -6532204 + B4A SINE B4 4 274 -18 5 1481 227 302 42 0 chr9 117543978 117544074 -6532098 + (CA)n Simple_repeat Simple_repeat 1 100 0 6 1481 216 0 0 0 chr9 117544397 117544421 -6531751 + (TCTCTG)n Simple_repeat Simple_repeat 1 24 0 6 1481 1008 143 208 0 chr9 117544450 117544618 -6531554 - B3 SINE B2 -13 203 1 6 1481 808 237 43 0 chr9 117544717 117544903 -6531269 + B3 SINE B2 3 196 -20 6 1481 231 36 0 0 chr9 117544909 117544937 -6531235 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1481 433 202 172 31 chr9 117545789 117545917 -6530255 - B3A SINE B2 -42 156 11 6 1481 258 56 0 0 chr9 117546575 117546611 -6529561 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1481 780 279 150 8 chr9 117546615 117546681 -6529491 - B4 SINE B4 -3 289 217 6 1481 225 0 0 0 chr9 117546681 117546706 -6529466 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1481 780 279 150 8 chr9 117546706 117546892 -6529280 - B4 SINE B4 -76 216 1 6 1481 1035 94 0 0 chr9 117546927 117547076 -6529096 + (GAAA)n Simple_repeat Simple_repeat 1 149 0 6 1481 225 94 0 0 chr9 117547076 117547108 -6529064 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 7 1481 261 0 0 0 chr9 117547139 117547168 -6529004 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 1481 587 251 100 25 chr9 117547191 117547391 -6528781 + B3 SINE B2 1 215 -1 7 1481 268 283 71 0 chr9 117547998 117548097 -6528075 - MER63B DNA AcHobo -10 426 321 7 1481 851 229 150 22 chr9 117548148 117548461 -6527711 - MTD LTR MaLR -49 370 18 7 1481 570 287 159 37 chr9 117551081 117551425 -6524747 - MTD LTR MaLR -16 403 18 7 1481 185 148 0 0 chr9 117551463 117551490 -6524682 + MER5A DNA MER1_type 1 27 -162 7 1481 1284 89 0 0 chr9 117551593 117551773 -6524399 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1481 393 22 0 0 chr9 117551773 117551819 -6524353 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 7 1481 1050 243 28 76 chr9 117552271 117552708 -6523464 - MTD LTR MaLR -30 389 6 7 1481 438 20 0 0 chr9 117553077 117553128 -6523044 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1481 1596 78 17 9 chr9 117553579 117553812 -6522360 + RLTR27 LTR ERVK 75 309 0 8 1481 1008 295 29 18 chr9 117553874 117554216 -6521956 - MTEa LTR MaLR -2 377 32 8 1481 1194 240 24 107 chr9 117554266 117554677 -6521495 - MTE2a LTR MaLR -2 377 1 8 1481 1107 59 0 0 chr9 117554854 117554989 -6521183 + B1_Mus1 SINE Alu 1 135 -13 8 1481 193 29 59 0 chr9 117554989 117555023 -6521149 + (CAA)n Simple_repeat Simple_repeat 1 36 0 8 1481 432 0 0 0 chr9 117556198 117556246 -6519926 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1481 1347 62 17 0 chr9 117556332 117556621 -6519551 + (TTCC)n Simple_repeat Simple_repeat 1 293 0 8 1481 254 137 19 19 chr9 117556630 117556682 -6519490 + CT-rich Low_complexity Low_complexity 2 53 0 8 1481 291 140 0 0 chr9 117556694 117556744 -6519428 + (TCCCC)n Simple_repeat Simple_repeat 3 52 0 8 1481 788 301 62 15 chr9 117557336 117557596 -6518576 + B4 SINE B4 1 272 -20 9 1481 470 57 0 14 chr9 117557616 117557687 -6518485 + (CA)n Simple_repeat Simple_repeat 1 70 0 9 1481 1348 238 18 60 chr9 117557786 117557985 -6518187 - ORR1D2 LTR MaLR 0 370 175 9 1481 936 124 0 0 chr9 117557985 117558163 -6518009 + (GA)n Simple_repeat Simple_repeat 1 178 0 9 1481 1348 238 18 60 chr9 117558163 117558347 -6517825 - ORR1D2 LTR MaLR -196 174 3 9 1481 292 274 89 21 chr9 117558347 117558537 -6517635 + L1ME3A LINE L1 5083 5285 -861 9 1481 370 285 146 19 chr9 117558542 117558836 -6517336 + L1ME3A LINE L1 5566 5886 -287 9 1481 437 220 10 10 chr9 117558993 117559094 -6517078 + PB1D10 SINE Alu 11 111 -6 9 1481 1027 244 77 7 chr9 117559171 117559443 -6516729 + B4A SINE B4 2 292 0 9 1481 243 61 0 0 chr9 117559489 117559522 -6516650 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1481 516 264 93 14 chr9 117559585 117559759 -6516413 - B3A SINE B2 -38 178 1 9 1481 214 205 24 0 chr9 117559811 117559894 -6516278 + (CA)n Simple_repeat Simple_repeat 2 86 0 9 1481 1202 267 38 35 chr9 117560229 117560602 -6515570 - MTD LTR MaLR -13 406 33 1 1481 270 207 165 44 chr9 117560634 117560725 -6515447 - MTD-int LTR MaLR -9 1249 1148 1 1481 346 236 33 59 chr9 117561689 117561842 -6514330 + ORR1E LTR MaLR 209 357 -13 1 1481 283 395 63 62 chr9 117561871 117562359 -6513813 + LTR82A LTR ERVL 154 642 -230 1 1481 520 270 28 28 chr9 117562964 117563181 -6512991 + LTR37B LTR ERV1 207 423 -45 1 1481 889 186 119 0 chr9 117563391 117563584 -6512588 + B3 SINE B2 1 216 0 1 1481 589 115 0 28 chr9 117564346 117564453 -6511719 + (GGGA)n Simple_repeat Simple_repeat 4 107 0 1 1481 216 130 0 0 chr9 117564547 117564593 -6511579 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 1 1481 367 270 20 0 chr9 117564997 117565097 -6511075 + ID_B1 SINE B4 116 217 -7 1 1481 1104 239 45 148 chr9 117565210 117565656 -6510516 - Lx8 LINE L1 -149 7324 6925 1 1481 456 335 34 53 chr9 117565677 117565885 -6510287 + MLT1A0 LTR MaLR 160 363 -2 1 1481 692 247 139 0 chr9 117565886 117566080 -6510092 + MLT1A0 LTR MaLR 133 353 -12 1 1481 361 351 58 27 chr9 117566802 117567060 -6509112 + MLT1C LTR MaLR 142 407 -60 1 1481 1042 186 34 223 chr9 117567613 117568111 -6508061 - MTD LTR MaLR -14 405 2 1 1481 662 246 7 14 chr9 117568589 117568737 -6507435 + RSINE1 SINE B4 4 150 -15 1 1481 249 33 0 0 chr9 117568737 117568767 -6507405 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1481 7698 42 1 1 chr9 117568843 117569760 -6506412 - L1Md_F2 LINE L1 -1 6581 5665 1 1481 1019 265 73 9 chr9 117569899 117570226 -6505946 + MTD LTR MaLR 22 369 -50 1 1481 559 196 8 8 chr9 117571439 117571573 -6504599 + (TATG)n Simple_repeat Simple_repeat 3 136 0 1 1482 1097 82 7 0 chr9 117572734 117572880 -6503292 + B1_Mm SINE Alu 1 147 0 1 1482 316 280 47 16 chr9 117572893 117573020 -6503152 + (CATATA)n Simple_repeat Simple_repeat 4 134 0 1 1482 259 214 23 16 chr9 117573079 117573207 -6502965 + (TA)n Simple_repeat Simple_repeat 2 130 0 1 1482 779 216 256 20 chr9 117573860 117574292 -6501880 + Lx9 LINE L1 7106 7639 -5 1 1482 414 0 0 0 chr9 117574361 117574407 -6501765 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1482 249 316 62 116 chr9 117574410 117574564 -6501608 + L1M5 LINE L1 3816 3957 -2189 1 1482 680 274 31 10 chr9 117574564 117574756 -6501416 - B3A SINE B2 -1 197 2 1 1482 249 316 62 116 chr9 117574756 117575006 -6501166 + L1M5 LINE L1 3958 4198 -1948 1 1482 646 250 0 0 chr9 117575045 117575177 -6500995 + RSINE1 SINE B4 3 134 -31 1 1482 218 171 0 0 chr9 117575207 117575242 -6500930 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1 1482 374 264 161 75 chr9 117575989 117576243 -6499929 - B4 SINE B4 -14 278 3 1 1482 342 0 0 0 chr9 117577161 117577199 -6498973 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1482 725 266 11 6 chr9 117577208 117577386 -6498786 - B3A SINE B2 -14 184 6 1 1482 831 215 38 196 chr9 117577836 117578183 -6497989 - B4 SINE B4 0 292 1 1 1482 573 0 39 0 chr9 117578450 117578527 -6497645 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 1482 270 0 0 0 chr9 117578545 117578575 -6497597 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1482 469 314 142 18 chr9 117578719 117579050 -6497122 - MLT2C2 LTR ERVL -90 374 3 1 1482 1023 97 0 0 chr9 117579141 117579295 -6496877 + (TTGG)n Simple_repeat Simple_repeat 2 155 0 1 1482 279 93 0 0 chr9 117579452 117579495 -6496677 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 1 1482 727 238 184 4 chr9 117579497 117579742 -6496430 - B4A SINE B4 0 292 4 1 1482 444 223 14 7 chr9 117579743 117579883 -6496289 + CT-rich Low_complexity Low_complexity 1 141 0 1 1482 432 231 0 71 chr9 117579883 117579995 -6496177 - PB1D10 SINE Alu -2 115 12 1 1482 218 200 0 0 chr9 117580144 117580189 -6495983 + (ATG)n Simple_repeat Simple_repeat 3 47 0 1 1482 263 358 0 27 chr9 117580189 117580301 -6495871 - PB1D7 SINE Alu -11 109 1 1 1482 454 294 22 28 chr9 117580806 117580988 -6495184 + B4A SINE B4 85 265 -27 1 1482 241 320 31 0 chr9 117581050 117581147 -6495025 + (CATA)n Simple_repeat Simple_repeat 2 101 0 1 1482 564 312 42 77 chr9 117581810 117582147 -6494025 + RMER13A LTR ERVK 30 354 -506 1 1482 201 282 47 12 chr9 117582619 117582705 -6493467 + L2 LINE L2 2682 2770 -649 1 1482 566 249 28 69 chr9 117582725 117582941 -6493231 - B3 SINE B2 -1 215 9 1 1482 414 292 69 5 chr9 117583492 117583709 -6492463 + MER33 DNA MER1_type 10 240 -84 1 1482 7485 75 35 10 chr9 117583890 117584888 -6491284 - RLTR13D5 LTR ERVK 0 1023 1 1 1482 745 240 157 61 chr9 117585330 117585428 -6490744 + ORR1E LTR MaLR 29 146 -213 1 1482 2982 44 3 64 chr9 117585428 117585817 -6490355 + RLTR10B2 LTR ERVK 1 365 0 1 1482 745 240 157 61 chr9 117585817 117586011 -6490161 + ORR1E LTR MaLR 147 349 -10 1 1482 1865 169 3 60 chr9 117586083 117586430 -6489742 - ORR1A2 LTR MaLR 0 327 1 1 1482 1216 278 127 34 chr9 117587818 117588355 -6487817 + Lx8 LINE L1 6887 7473 0 1 1482 22 0 0 0 chr9 117589131 117589153 -6487019 + AT_rich Low_complexity Low_complexity 1 22 0 1 1482 437 206 145 40 chr9 117589449 117589601 -6486571 + MTEa LTR MaLR 206 373 -6 1 1482 342 286 125 8 chr9 117590544 117590664 -6485508 + B1F SINE Alu 14 147 -2 1 1482 368 301 128 20 chr9 117590716 117590865 -6485307 - MER5A DNA MER1_type -24 165 1 1 1482 207 0 0 0 chr9 117591232 117591255 -6484917 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1482 236 333 0 67 chr9 117591289 117591379 -6484793 + MER20 DNA MER1_type 131 214 -5 1 1482 21 0 0 0 chr9 117592090 117592111 -6484061 + AT_rich Low_complexity Low_complexity 1 21 0 1 1482 636 272 26 32 chr9 117592191 117592381 -6483791 - MTEa LTR MaLR -186 193 5 1 1482 181 314 171 0 chr9 117593588 117593658 -6482514 + MIRm SINE MIR 174 255 -21 1 1482 351 324 29 29 chr9 117594583 117594723 -6481449 - RSINE1 SINE B4 -8 157 18 1 1482 307 281 55 55 chr9 117594787 117594915 -6481257 - B3A SINE B2 -1 197 70 1 1482 337 312 88 0 chr9 117595101 117595226 -6480946 + MLT1H LTR MaLR 59 194 -355 1 1482 309 272 82 88 chr9 117595908 117596114 -6480058 + L1M3 LINE L1 4134 4342 -1801 1 1482 297 0 0 0 chr9 117596114 117596147 -6480025 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1482 441 0 0 0 chr9 117596147 117596195 -6479977 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1482 309 272 82 88 chr9 117596195 117596305 -6479867 + L1M3 LINE L1 4343 4448 -1695 1 1482 2986 215 114 43 chr9 117596310 117597142 -6479030 + Lx7 LINE L1 6806 7696 0 1 1482 565 286 29 16 chr9 117597152 117597397 -6478775 + L1M3 LINE L1 4459 4706 -1434 1 1482 250 313 105 50 chr9 117597446 117597601 -6478571 + B4 SINE B4 33 205 -87 1 1482 549 178 0 0 chr9 117597605 117597723 -6478449 + GA-rich Low_complexity Low_complexity 1 118 0 1 1482 265 289 127 45 chr9 117597863 117598084 -6478088 + L1M3 LINE L1 4694 4932 -1211 1 1482 371 305 52 52 chr9 117598551 117598882 -6477290 + L1MEc LINE L1 2224 2553 -3760 1 1482 285 328 36 91 chr9 117598980 117599201 -6476971 + RMER4A LTR ERVK 54 262 -204 1 1482 276 276 203 6 chr9 117599505 117599558 -6476614 + L1MEc LINE L1 2964 3025 -3294 1 1482 180 0 0 0 chr9 117599558 117599578 -6476594 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1482 276 276 203 6 chr9 117599578 117599706 -6476466 + L1MEc LINE L1 3026 3180 -3139 1 1482 639 258 41 35 chr9 117599793 117599990 -6476182 + B3A SINE B2 1 198 0 1 1482 647 315 114 14 chr9 117600106 117600510 -6475662 + L1_Mur3 LINE L1 4176 4637 -1506 1 1482 866 267 60 25 chr9 117600569 117600888 -6475284 + L1MEc LINE L1 3515 3844 -2475 1 1482 864 205 73 24 chr9 117601077 117601282 -6474890 - B3 SINE B2 0 216 2 1 1482 418 259 262 12 chr9 117601701 117601861 -6474311 - RMER15 LTR ERVL -40 535 336 1 1482 1496 213 88 9 chr9 117602756 117603094 -6473078 - MTE2b LTR MaLR -3 367 3 1 1482 646 273 35 10 chr9 117604168 117604368 -6471804 + B3 SINE B2 7 211 -5 1 1482 500 323 6 6 chr9 117604892 117605051 -6471121 + B4 SINE B4 1 159 -133 1 1482 815 276 23 0 chr9 117605349 117605566 -6470606 + ID_B1 SINE B4 3 224 0 1 1482 585 28 0 0 chr9 117606162 117606233 -6469939 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1482 920 293 34 30 chr9 117606233 117606492 -6469680 - B4 SINE B4 -30 262 2 1 1482 631 271 5 76 chr9 117606496 117606680 -6469492 - B3A SINE B2 0 198 28 1 1482 273 263 0 0 chr9 117607049 117607106 -6469066 - B3A SINE B2 -140 58 2 1 1482 387 321 84 26 chr9 117608041 117608362 -6467810 + MLT1A1 LTR MaLR 28 408 0 1 1482 275 250 45 83 chr9 117609106 117609263 -6466909 + B3 SINE B2 66 216 0 1 1482 233 221 132 72 chr9 117610475 117610558 -6465614 - B4 SINE B4 -2 290 203 1 1482 450 0 0 0 chr9 117611472 117611522 -6464650 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1482 204 40 0 0 chr9 117611630 117611655 -6464517 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1482 775 329 24 17 chr9 117612066 117612354 -6463818 - B4 SINE B4 -2 290 1 1 1482 228 344 8 54 chr9 117612475 117612604 -6463568 - LTR16E1 LTR ERVL -5 533 411 1 1482 301 297 120 88 chr9 117612804 117612996 -6463176 + Lx8 LINE L1 7057 7254 -219 1 1482 549 110 0 0 chr9 117613097 117613197 -6462975 + (GA)n Simple_repeat Simple_repeat 2 101 0 1 1482 315 0 0 0 chr9 117613277 117613312 -6462860 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1482 459 0 0 0 chr9 117613312 117613362 -6462810 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1482 263 128 0 0 chr9 117613461 117613508 -6462664 + Lx8 LINE L1 7425 7471 -2 1 1482 243 367 107 18 chr9 117613529 117613698 -6462474 + MIR SINE MIR 8 191 -71 1 1482 785 182 7 0 chr9 117613757 117613894 -6462278 - URR1A DNA MER1_type 0 226 89 1 1482 1117 175 115 0 chr9 117614370 117614570 -6461602 - URR1A DNA MER1_type -3 223 1 1 1482 342 210 74 0 chr9 117614670 117614751 -6461421 + L1MC4a LINE L1 6593 6679 -1203 1 1482 416 139 0 12 chr9 117614770 117614850 -6461322 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1482 516 274 98 80 chr9 117614925 117615158 -6461014 - B4A SINE B4 -57 235 6 2 1482 296 286 51 43 chr9 117615405 117615522 -6460650 - B1F2 SINE Alu -27 122 5 2 1482 752 217 24 113 chr9 117615418 117615631 -6460541 - B4 SINE B4 -94 198 5 2 1482 531 0 0 0 chr9 117617152 117617211 -6458961 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1482 229 296 92 9 chr9 117618073 117618182 -6457990 + L1M3e LINE L1 1283 1400 -5630 2 1482 226 328 138 39 chr9 117618522 117618652 -6457520 + MER3 DNA MER1_type 15 157 -52 2 1482 321 257 118 10 chr9 117619172 117619274 -6456898 - PB1D10 SINE Alu 0 117 5 2 1482 563 280 164 26 chr9 117620020 117620251 -6455921 + RMER15 LTR ERVL 299 561 -14 2 1482 264 356 159 0 chr9 117620536 117620668 -6455504 + LTR16C LTR ERVL 9 161 -328 2 1482 228 35 0 0 chr9 117620786 117620815 -6455357 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1482 297 0 0 0 chr9 117620815 117620847 -6455325 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1482 543 283 161 26 chr9 117620916 117621108 -6455064 - B4A SINE B4 -8 284 67 2 1482 382 255 10 48 chr9 117621152 117621255 -6454917 - B4A SINE B4 -191 101 3 2 1482 231 309 65 97 chr9 117621581 117621735 -6454437 - MER72B LTR ERV1 -540 228 80 2 1482 231 114 0 0 chr9 117621974 117622009 -6454163 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 2 1482 342 138 0 0 chr9 117622019 117622077 -6454095 + (TCTCC)n Simple_repeat Simple_repeat 5 62 0 2 1482 412 108 31 0 chr9 117622123 117622188 -6453984 - HAL1-2a_MD LINE L1 -611 2413 2347 2 1482 568 262 7 54 chr9 117622860 117623009 -6453163 + ID_B1 SINE B4 82 223 -1 2 1482 564 134 16 16 chr9 117623023 117623144 -6453028 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 2 1482 1122 85 23 0 chr9 117623181 117623357 -6452815 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1482 227 347 20 39 chr9 117623856 117624009 -6452163 + B4A SINE B4 2 151 -141 2 1482 810 285 55 29 chr9 117625059 117625334 -6450838 + B4 SINE B4 2 283 -9 2 1482 409 248 0 20 chr9 117625376 117625528 -6450644 + (CATATA)n Simple_repeat Simple_repeat 6 154 0 2 1482 625 275 37 6 chr9 117626499 117626700 -6449472 - B3A SINE B2 -11 205 2 2 1482 351 141 0 0 chr9 117627397 117627461 -6448711 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 2 1482 1317 75 0 0 chr9 117627461 117627733 -6448439 + (GGAA)n Simple_repeat Simple_repeat 1 272 0 2 1482 565 257 26 58 chr9 117628909 117629099 -6447073 + RLTR23 LTR ERV1 247 430 0 2 1482 198 103 0 0 chr9 117629849 117629878 -6446294 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1482 596 205 30 45 chr9 117629881 117630014 -6446158 + ID_B1 SINE B4 90 220 -4 2 1482 965 149 201 0 chr9 117630103 117630277 -6445895 + B3 SINE B2 2 210 -6 2 1482 300 257 97 35 chr9 117630569 117630714 -6445458 - ORR1E LTR MaLR -143 216 63 2 1482 223 294 96 36 chr9 117632234 117632400 -6443772 + L3 LINE CR1 3759 3934 -555 2 1482 502 297 31 16 chr9 117632618 117632785 -6443387 + B4A SINE B4 1 167 -57 2 1482 1780 179 39 14 chr9 117632785 117633241 -6442931 + ORR1B2 LTR MaLR 1 394 0 2 1482 287 239 72 22 chr9 117633267 117633377 -6442795 + RSINE1 SINE B4 79 272 -20 2 1482 322 260 107 53 chr9 117633433 117633677 -6442495 - RMER12 LTR ERVK -332 990 734 2 1482 220 348 154 8 chr9 117633734 117633980 -6442192 + L3 LINE CR1 3950 4231 -258 2 1482 992 272 106 23 chr9 117634190 117634446 -6441726 + B4 SINE B4 10 286 -6 2 1482 372 119 0 0 chr9 117634515 117634574 -6441598 + (CATA)n Simple_repeat Simple_repeat 1 59 0 2 1482 227 301 70 89 chr9 117634613 117634770 -6441402 - RLTR22_Mur LTR ERVK -387 1461 1308 2 1482 245 292 80 62 chr9 117634762 117634875 -6441297 - RMER12 LTR ERVK -472 850 736 2 1482 3673 253 27 45 chr9 117635301 117636287 -6439885 - RCHARR1 DNA MER1_type -3 971 3 2 1482 240 361 31 0 chr9 117636418 117636515 -6439657 + MER94 DNA AcHobo 35 134 0 2 1482 471 338 25 6 chr9 117636785 117636943 -6439229 - RSINE1 SINE B4 -2 163 3 2 1482 299 286 62 23 chr9 117637993 117638122 -6438050 + RMER15 LTR ERVL 380 513 -62 2 1482 529 263 235 13 chr9 117638593 117638827 -6437345 + B4A SINE B4 3 288 -4 2 1482 942 256 132 62 chr9 117638923 117639323 -6436849 + RMER13A LTR ERVK 1 428 -432 2 1482 271 366 25 79 chr9 117639353 117639524 -6436648 + RMER13A LTR ERVK 537 691 -169 2 1482 3601 23 0 0 chr9 117639524 117639920 -6436252 + MTA_Mm LTR MaLR 1 396 0 2 1482 271 366 25 79 chr9 117639920 117639988 -6436184 + RMER13A LTR ERVK 692 763 -97 2 1482 190 317 19 65 chr9 117640282 117640390 -6435782 - L2c LINE L2 -46 3341 3239 2 1482 267 103 0 0 chr9 117640961 117641000 -6435172 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1482 560 290 41 53 chr9 117641001 117641172 -6435000 - B4A SINE B4 -114 178 10 2 1482 315 94 46 15 chr9 117641687 117641752 -6434420 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 2 1482 751 231 19 6 chr9 117641757 117641918 -6434254 - ID_B1 SINE B4 0 224 62 2 1482 335 243 0 0 chr9 117642372 117642442 -6433730 - ID SINE ID -152 72 3 2 1482 715 227 67 0 chr9 117643033 117643183 -6432989 + ID_B1 SINE B4 65 224 0 2 1482 704 304 91 33 chr9 117643211 117643461 -6432711 + B4A SINE B4 1 267 -25 2 1482 1456 151 227 16 chr9 117643461 117643778 -6432394 + ORR1C2 LTR MaLR 1 384 0 2 1482 704 304 91 33 chr9 117643778 117643802 -6432370 + B4A SINE B4 268 291 -1 2 1482 360 0 0 0 chr9 117643808 117643848 -6432324 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1482 596 50 12 0 chr9 117644204 117644284 -6431888 + (TC)n Simple_repeat Simple_repeat 1 81 0 2 1482 348 287 31 3 chr9 117645362 117645474 -6430698 - PB1D7 SINE Alu -32 117 5 2 1482 218 302 58 0 chr9 117645399 117645485 -6430687 - B4A SINE B4 -125 167 77 2 1482 432 216 0 0 chr9 117646540 117646642 -6429530 + (TATATG)n Simple_repeat Simple_repeat 4 105 0 2 1482 241 210 24 24 chr9 117646642 117646725 -6429447 - Lx9 LINE L1 -21 7623 7541 2 1482 298 266 26 44 chr9 117646858 117646972 -6429200 + MER5A1 DNA MER1_type 2 113 -53 2 1482 342 121 0 0 chr9 117646972 117647038 -6429134 + (TCTG)n Simple_repeat Simple_repeat 1 66 0 2 1482 436 234 19 183 chr9 117647118 117647324 -6428848 - B4 SINE B4 -120 172 2 2 1482 485 288 60 53 chr9 117648070 117648342 -6427830 + ORR1E LTR MaLR 1 287 -83 2 1482 704 274 60 64 chr9 117648751 117649032 -6427140 + B4A SINE B4 3 282 -10 2 1482 249 83 0 0 chr9 117650049 117650085 -6426087 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1482 270 183 0 0 chr9 117650250 117650321 -6425851 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1482 643 263 66 122 chr9 117650321 117650503 -6425669 - B4 SINE B4 0 292 125 2 1482 480 18 0 0 chr9 117650503 117650560 -6425612 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1482 643 263 66 122 chr9 117650560 117650680 -6425492 - B4 SINE B4 -168 124 7 2 1482 459 0 0 0 chr9 117651455 117651506 -6424666 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1482 483 241 154 8 chr9 117651507 117651624 -6424548 - B4 SINE B4 -9 283 150 2 1482 297 331 47 47 chr9 117651622 117651749 -6424423 + LTR33B LTR ERVL 57 183 -320 2 1482 936 232 87 101 chr9 117651974 117652010 -6424162 - MTE2a LTR MaLR -29 350 313 2 1482 384 77 0 0 chr9 117652010 117652062 -6424110 + (TTG)n Simple_repeat Simple_repeat 2 53 0 2 1482 936 232 87 101 chr9 117652062 117652380 -6423792 - MTE2a LTR MaLR -67 312 3 2 1482 709 289 128 24 chr9 117652488 117652786 -6423386 - MTEa LTR MaLR 0 379 51 2 1482 381 312 131 17 chr9 117652948 117653124 -6423048 + MLT2B3 LTR ERVL 19 214 -340 2 1482 504 214 91 84 chr9 117653505 117653648 -6422524 + B1F SINE Alu 6 149 0 2 1482 440 237 0 21 chr9 117655413 117655508 -6420664 + B3 SINE B2 3 95 -121 2 1482 438 340 141 40 chr9 117655595 117655843 -6420329 - RCHARR1 DNA MER1_type -699 275 3 2 1482 182 97 129 0 chr9 117656309 117656340 -6419832 + L4 LINE RTE 1000 1034 -995 2 1482 310 316 148 45 chr9 117656443 117656483 -6419689 - ID_B1 SINE B4 -1 223 184 2 1482 468 0 0 0 chr9 117656483 117656535 -6419637 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1482 310 316 148 45 chr9 117656535 117656696 -6419476 - ID_B1 SINE B4 -41 183 1 2 1482 271 176 20 0 chr9 117656712 117656763 -6419409 - tRNA-Tyr-TAC tRNA tRNA -3 73 22 2 1482 180 0 0 0 chr9 117657345 117657365 -6418807 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2 1482 237 65 0 0 chr9 117657366 117657397 -6418775 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1482 758 257 84 31 chr9 117657768 117657993 -6418179 + B4A SINE B4 3 239 -53 2 1482 456 19 0 0 chr9 117658001 117658054 -6418118 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1482 210 282 9 52 chr9 117658069 117658185 -6417987 + (TG)n Simple_repeat Simple_repeat 1 111 0 2 1482 624 274 117 49 chr9 117658214 117658454 -6417718 - B4A SINE B4 -4 288 24 2 1482 636 297 56 9 chr9 117658580 117658794 -6417378 + MER58A DNA MER1_type 1 224 0 2 1482 37 39 0 0 chr9 117659289 117659340 -6416832 + AT_rich Low_complexity Low_complexity 1 51 0 2 1482 1667 325 93 29 chr9 117659701 117660423 -6415749 + MER21B LTR ERV1 47 814 -49 2 1482 1112 278 33 103 chr9 117660810 117661199 -6414973 - MTE2a LTR MaLR -17 362 1 2 1482 226 274 32 0 chr9 117661417 117661479 -6414693 - MIRb SINE MIR -181 87 24 2 1482 232 176 29 0 chr9 117661743 117661811 -6414361 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1482 314 254 160 34 chr9 117661814 117661989 -6414183 - B3 SINE B2 -14 202 6 2 1482 513 76 0 0 chr9 117662909 117662988 -6413184 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 2 1482 201 74 0 0 chr9 117662988 117663015 -6413157 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1482 955 284 39 11 chr9 117663032 117663313 -6412859 - B4 SINE B4 0 292 4 2 1482 360 0 0 0 chr9 117663620 117663660 -6412512 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1482 593 312 0 0 chr9 117663662 117663816 -6412356 - RSINE1 SINE B4 -7 158 5 2 1482 231 114 0 0 chr9 117665191 117665226 -6410946 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1482 1025 291 19 93 chr9 117665348 117665428 -6410744 - B4A SINE B4 -1 291 215 3 1482 3538 36 84 2 chr9 117665428 117665867 -6410305 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1482 1025 291 19 93 chr9 117665867 117666097 -6410075 - B4A SINE B4 -78 214 4 3 1482 309 183 0 0 chr9 117666676 117666736 -6409436 + (TTA)n Simple_repeat Simple_repeat 2 61 0 3 1482 447 246 40 2 chr9 117667255 117667368 -6408804 - MLT1A1 LTR MaLR -12 396 250 3 1482 533 221 35 49 chr9 117667373 117667516 -6408656 + B4A SINE B4 83 223 -69 3 1482 718 267 20 25 chr9 117667520 117667720 -6408452 - B4 SINE B4 -74 218 20 3 1482 250 301 96 0 chr9 117667657 117667730 -6408442 - ID2 SINE ID -2 81 2 3 1482 1273 287 47 17 chr9 117668532 117668894 -6407278 + MTE2b LTR MaLR 4 376 -3 3 1482 216 267 83 0 chr9 117668971 117669031 -6407141 - B4A SINE B4 -222 70 6 3 1482 332 236 0 27 chr9 117669338 117669412 -6406760 + ID4_ SINE ID 12 83 0 3 1482 300 301 19 28 chr9 117669412 117669444 -6406728 + ID_B1 SINE B4 12 116 -108 3 1482 24 0 0 0 chr9 117669615 117669639 -6406533 + AT_rich Low_complexity Low_complexity 1 24 0 3 1482 377 350 21 14 chr9 117669672 117669817 -6406355 - MIR SINE MIR -19 243 98 3 1482 249 110 90 0 chr9 117669924 117670024 -6406148 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1482 493 279 166 36 chr9 117670053 117670306 -6405866 + B4A SINE B4 3 288 -4 3 1482 456 311 23 40 chr9 117670633 117670807 -6405365 + L3 LINE CR1 3558 3728 -761 3 1482 443 264 66 92 chr9 117671133 117671166 -6405006 - B2_Mm2 SINE B2 -4 191 150 3 1482 423 0 0 0 chr9 117671166 117671213 -6404959 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1482 486 0 0 0 chr9 117671213 117671266 -6404906 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1482 688 264 66 92 chr9 117671266 117671427 -6404745 - B3A SINE B2 -43 155 1 3 1482 393 22 0 0 chr9 117671995 117672041 -6404131 + (CAA)n Simple_repeat Simple_repeat 1 46 0 3 1482 327 360 44 7 chr9 117672185 117672322 -6403850 - MER58A DNA MER1_type -82 142 1 3 1482 270 267 0 0 chr9 117672592 117672652 -6403520 + B4A SINE B4 2 61 -231 3 1482 249 33 0 0 chr9 117672809 117672839 -6403333 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1482 582 0 39 0 chr9 117672839 117672916 -6403256 + (GA)n Simple_repeat Simple_repeat 2 82 0 3 1482 237 182 45 0 chr9 117673357 117673401 -6402771 - Charlie6 DNA MER1_type -1583 1917 1872 3 1482 675 178 0 25 chr9 117673505 117673626 -6402546 + PB1D9 SINE Alu 2 119 -1 3 1482 832 286 14 5 chr9 117673943 117674161 -6402011 - B4A SINE B4 -4 288 69 3 1482 736 318 43 21 chr9 117674249 117674529 -6401643 - Zaphod DNA Tip100 -6 4025 3740 3 1482 794 286 167 61 chr9 117674538 117674963 -6401209 - Zaphod DNA Tip100 -3453 578 109 3 1482 318 175 0 0 chr9 117674977 117675057 -6401115 + GA-rich Low_complexity Low_complexity 1 80 0 3 1482 242 247 31 92 chr9 117675388 117675486 -6400686 - Lx8 LINE L1 -18 7455 7364 3 1482 241 333 19 19 chr9 117675486 117675593 -6400579 + RLTR22_Mur LTR ERVK 1304 1410 -438 3 1482 279 253 27 0 chr9 117675635 117675710 -6400462 - Lx8 LINE L1 -250 7223 7147 3 1482 350 258 168 14 chr9 117676244 117676474 -6399698 - RMER20A LTR ERVK -235 392 131 3 1482 935 275 40 7 chr9 117677604 117677882 -6398290 + B4A SINE B4 3 289 -3 3 1482 451 313 35 20 chr9 117678288 117678487 -6397685 + B4A SINE B4 6 207 -85 3 1482 236 265 47 38 chr9 117678566 117678672 -6397500 - RMER12 LTR ERVK -480 842 736 3 1482 334 100 0 32 chr9 117679501 117679563 -6396609 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1482 309 312 74 43 chr9 117679588 117679819 -6396353 - Lx8 LINE L1 -3 7470 7233 3 1482 3328 95 0 0 chr9 117679814 117680247 -6395925 - L1_Mus3 LINE L1 -75 5808 5376 3 1482 5896 65 22 3 chr9 117680249 117681021 -6395151 + L1_Mus3 LINE L1 5845 6631 -7 3 1482 602 307 86 51 chr9 117682662 117682906 -6393266 + MER21B LTR ERV1 40 298 -565 3 1482 2056 151 35 110 chr9 117682906 117683359 -6392813 + MTD LTR MaLR 1 419 0 3 1482 602 307 86 51 chr9 117683359 117683371 -6392801 + MER21B LTR ERV1 299 305 -558 3 1482 370 308 53 8 chr9 117683439 117683570 -6392602 + MER21B LTR ERV1 414 550 -313 3 1482 837 264 79 15 chr9 117684739 117685004 -6391168 + B4A SINE B4 4 285 -7 3 1482 340 82 16 16 chr9 117685693 117685755 -6390417 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1482 683 313 82 8 chr9 117685762 117685935 -6390237 - B4 SINE B4 -28 264 80 3 1482 306 0 0 0 chr9 117685935 117685969 -6390203 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1482 683 313 82 8 chr9 117685969 117686040 -6390132 - B4 SINE B4 -213 79 2 3 1482 3204 58 5 5 chr9 117686640 117687040 -6389132 - MTB LTR MaLR 0 400 1 3 1482 219 157 0 0 chr9 117687063 117687114 -6389058 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 3 1482 227 274 32 0 chr9 117687153 117687215 -6388957 - ID4_ SINE ID -17 66 3 3 1482 222 286 58 35 chr9 117687713 117687800 -6388372 - B3A SINE B2 -108 90 2 3 1482 266 274 0 0 chr9 117688201 117688252 -6387920 + RSINE1 SINE B4 2 52 -113 3 1482 1098 251 67 48 chr9 117688461 117688833 -6387339 - MTEa LTR MaLR 0 379 1 3 1482 891 284 107 40 chr9 117689838 117690241 -6385931 + Lx8 LINE L1 7034 7463 -10 3 1482 1763 191 47 52 chr9 117690752 117691138 -6385034 - ORR1C2 LTR MaLR 0 384 1 3 1482 608 318 50 57 chr9 117692042 117692322 -6383850 - B4A SINE B4 -7 285 8 3 1482 353 197 158 0 chr9 117693688 117693764 -6382408 + B4A SINE B4 140 227 -65 3 1482 675 258 22 17 chr9 117693765 117693946 -6382226 + B3A SINE B2 1 182 -16 3 1482 306 106 0 0 chr9 117694061 117694108 -6382064 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1482 357 172 47 0 chr9 117694557 117694621 -6381551 - HAL1-3A_ME LINE L1 -823 2035 1969 3 1482 360 238 24 0 chr9 117694624 117694708 -6381464 + RMER12 LTR ERVK 775 860 -462 3 1482 377 66 16 0 chr9 117695463 117695524 -6380648 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1482 193 238 24 0 chr9 117695953 117695995 -6380177 - MER5B DNA MER1_type -51 127 85 3 1482 824 303 43 75 chr9 117696178 117696549 -6379623 + ORR1E LTR MaLR 1 359 0 3 1482 288 379 24 0 chr9 117697396 117697520 -6378652 + B4A SINE B4 18 144 -148 3 1482 207 100 0 0 chr9 117697520 117697550 -6378622 + (GGA)n Simple_repeat Simple_repeat 1 30 0 3 1482 1601 129 117 16 chr9 117697613 117697762 -6378410 + RMER4A LTR ERVK 1 154 -312 3 1482 366 23 0 0 chr9 117697762 117697805 -6378367 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1482 1601 129 117 16 chr9 117697805 117697963 -6378209 + RMER4A LTR ERVK 155 338 -128 3 1482 504 0 0 0 chr9 117697963 117698019 -6378153 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1482 399 149 27 0 chr9 117698027 117698101 -6378071 + RMER4A LTR ERVK 391 466 0 3 1482 253 191 0 0 chr9 117698127 117698174 -6377998 - MER4B-int LTR ERV1 -5562 1196 1150 3 1482 771 188 0 0 chr9 117698174 117698401 -6377771 + (CA)n Simple_repeat Simple_repeat 1 227 0 3 1482 499 185 0 13 chr9 117699108 117699261 -6376911 + (CAG)n Simple_repeat Simple_repeat 2 152 0 3 1482 603 189 0 0 chr9 117699283 117699694 -6376478 + (CAG)n Simple_repeat Simple_repeat 1 411 0 3 1482 569 295 57 85 chr9 117700751 117701033 -6375139 - B4 SINE B4 0 292 19 3 1482 311 274 53 0 chr9 117701557 117701652 -6374520 - B1F2 SINE Alu -2 147 48 3 1482 547 301 35 35 chr9 117701690 117701890 -6374282 - ID_B1 SINE B4 -19 205 6 3 1482 1138 109 12 0 chr9 117701945 117702110 -6374062 - URR1B DNA MER1_type 0 225 59 3 1482 989 268 30 23 chr9 117702213 117702477 -6373695 + B4 SINE B4 1 266 -26 3 1482 267 31 0 0 chr9 117702477 117702509 -6373663 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1482 915 36 0 0 chr9 117702509 117702619 -6373553 + (GA)n Simple_repeat Simple_repeat 2 112 0 3 1483 1600 267 93 20 chr9 117703350 117703855 -6372317 + RMER19C LTR ERVK 70 611 0 3 1483 518 70 43 17 chr9 117704608 117704724 -6371448 + (TG)n Simple_repeat Simple_repeat 1 119 0 3 1483 415 256 22 43 chr9 117704725 117704864 -6371308 - RSINE1 SINE B4 -19 146 11 3 1483 332 251 23 12 chr9 117704927 117705022 -6371150 + PB1D10 SINE Alu 15 113 -36 3 1483 588 281 79 38 chr9 117705022 117705278 -6370894 + B4A SINE B4 1 292 0 3 1483 198 0 0 0 chr9 117705288 117705310 -6370862 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1483 252 86 0 0 chr9 117705309 117705344 -6370828 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1483 192 395 78 16 chr9 117705551 117705744 -6370428 - MIRb SINE MIR -15 253 49 3 1483 526 237 135 51 chr9 117706252 117706430 -6369742 - B4 SINE B4 -99 193 1 3 1483 519 244 17 0 chr9 117706614 117706729 -6369443 + PB1D9 SINE Alu 1 117 -3 3 1483 369 314 0 0 chr9 117706897 117707002 -6369170 + PB1D10 SINE Alu 1 105 -12 3 1483 529 116 23 68 chr9 117707002 117707178 -6368994 + (TCTCTG)n Simple_repeat Simple_repeat 5 172 0 3 1483 583 224 247 27 chr9 117707531 117707750 -6368422 - B4A SINE B4 -24 268 2 3 1483 723 146 0 40 chr9 117708132 117708357 -6367815 + CT-rich Low_complexity Low_complexity 1 215 0 3 1483 210 398 93 0 chr9 117708378 117708486 -6367686 - PB1D9 SINE Alu 0 120 3 3 1483 265 200 167 20 chr9 117709389 117709491 -6366681 + RSINE1 SINE B4 11 127 -38 3 1483 257 323 150 72 chr9 117709582 117709762 -6366410 + ORR1E LTR MaLR 1 194 -165 3 1483 1277 281 71 15 chr9 117710405 117710816 -6365356 + MTE-int LTR MaLR 1 434 -1146 3 1483 1028 173 56 5 chr9 117711639 117711837 -6364335 - B3 SINE B2 -8 208 1 3 1483 887 226 159 26 chr9 117712160 117712424 -6363748 - MTE2b LTR MaLR -59 320 22 3 1483 509 255 6 0 chr9 117713881 117714038 -6362134 + (TA)n Simple_repeat Simple_repeat 2 159 0 3 1483 212 0 36 0 chr9 117714039 117714067 -6362105 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1483 238 100 0 70 chr9 117714073 117714116 -6362056 + PB1D9 SINE Alu 81 120 0 3 1483 59 81 0 0 chr9 117714586 117714722 -6361450 + AT_rich Low_complexity Low_complexity 1 136 0 4 1483 204 40 0 0 chr9 117714722 117714747 -6361425 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1483 344 304 183 0 chr9 117714776 117714891 -6361281 - RSINE1 SINE B4 -5 160 25 4 1483 912 190 6 12 chr9 117715462 117715627 -6360545 + RSINE1 SINE B4 2 165 0 4 1483 270 361 61 8 chr9 117716105 117716236 -6359936 - MER91A DNA Tip100 -58 138 1 4 1483 889 143 0 14 chr9 117716537 117716679 -6359493 + MTC LTR MaLR 282 421 0 4 1483 780 122 0 0 chr9 117716691 117716814 -6359358 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 4 1483 360 59 0 0 chr9 117716816 117716867 -6359305 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 4 1483 204 156 22 22 chr9 117716876 117716922 -6359250 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1483 962 267 60 32 chr9 117716922 117717204 -6358968 - B4 SINE B4 0 292 3 4 1483 1290 164 26 127 chr9 117717415 117717723 -6358449 - ORR1A4 LTR MaLR -52 277 1 4 1483 546 271 69 31 chr9 117718090 117718250 -6357922 - B4 SINE B4 -20 272 107 4 1483 378 0 0 0 chr9 117718257 117718299 -6357873 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1483 236 237 16 33 chr9 117718576 117718637 -6357535 + MLT2C1 LTR ERVL 443 502 -61 4 1483 688 318 71 54 chr9 117718713 117719049 -6357123 + Tigger7 DNA MER2_type 71 412 -2079 4 1483 315 382 78 7 chr9 117719024 117719285 -6356887 + Tigger7 DNA MER2_type 2207 2488 -3 4 1483 553 317 87 68 chr9 117719409 117719673 -6356499 + B4A SINE B4 1 269 -23 4 1483 240 86 0 0 chr9 117719673 117719708 -6356464 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1483 260 238 0 9 chr9 117720437 117720543 -6355629 + (TG)n Simple_repeat Simple_repeat 1 105 0 4 1483 403 226 101 112 chr9 117720543 117720722 -6355450 - B4 SINE B4 0 292 116 4 1483 1226 171 5 5 chr9 117720723 117720929 -6355243 - ORR1D1-int LTR MaLR -424 946 741 4 1483 2980 199 20 27 chr9 117720935 117721535 -6354637 - ORR1D1-int LTR MaLR -772 598 3 4 1483 1235 179 144 30 chr9 117721535 117721830 -6354342 - ORR1D1 LTR MaLR -2 372 42 4 1483 297 0 0 0 chr9 117721830 117721863 -6354309 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1483 459 0 0 0 chr9 117721863 117721913 -6354259 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1483 1235 179 144 30 chr9 117721913 117721950 -6354222 - ORR1D1 LTR MaLR -333 41 2 4 1483 523 281 127 43 chr9 117722680 117722933 -6353239 + B4 SINE B4 1 274 -18 4 1483 452 241 6 0 chr9 117722990 117723164 -6353008 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 1483 398 287 49 49 chr9 117724262 117724405 -6351767 + B1F SINE Alu 1 143 -6 4 1483 262 305 72 79 chr9 117724532 117724810 -6351362 - B4 SINE B4 -16 276 1 4 1483 3516 22 0 10 chr9 117725124 117725535 -6350637 - L1Md_F2 LINE L1 -523 6059 5653 4 1483 3943 69 0 23 chr9 117725535 117726052 -6350120 + L1Md_F2 LINE L1 6066 6570 -12 4 1483 541 243 28 21 chr9 117726066 117726209 -6349963 + B1F2 SINE Alu 1 144 -5 4 1483 622 229 15 15 chr9 117726249 117726382 -6349790 + B3A SINE B2 22 154 -44 4 1483 600 98 0 0 chr9 117726382 117726484 -6349688 + (CA)n Simple_repeat Simple_repeat 1 102 0 4 1483 423 0 0 0 chr9 117726484 117726530 -6349642 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1483 186 43 0 0 chr9 117726531 117726554 -6349618 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1483 310 247 97 125 chr9 117726554 117726594 -6349578 + B2_Mm2 SINE B2 143 192 -3 4 1483 256 305 67 17 chr9 117727400 117727520 -6348652 - Cheshire DNA MER1_type -2232 188 63 4 1483 191 325 98 16 chr9 117727977 117728099 -6348073 + L2b LINE L2 3241 3372 -3 4 1483 946 271 66 12 chr9 117728881 117729124 -6347048 + B4A SINE B4 2 257 -35 4 1483 252 184 0 0 chr9 117729206 117729255 -6346917 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1483 345 302 56 9 chr9 117729270 117729377 -6346795 + PB1D9 SINE Alu 6 117 -3 4 1483 346 314 41 33 chr9 117729382 117729504 -6346668 - MIR SINE MIR -101 161 39 4 1483 708 210 0 0 chr9 117730079 117730246 -6345926 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 1483 306 237 0 0 chr9 117730265 117730362 -6345810 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1483 812 197 0 13 chr9 117730572 117730721 -6345451 - ORR1C2 LTR MaLR -1 383 237 4 1483 541 164 108 9 chr9 117731472 117731583 -6344589 - ORR1C2 LTR MaLR -256 122 1 4 1483 380 367 71 16 chr9 117731780 117732035 -6344137 - MLT2B1 LTR ERVL -99 421 153 4 1483 265 316 0 0 chr9 117732596 117732675 -6343497 - ERVL-B4-int LTR ERVL -450 5264 5186 4 1483 431 35 0 17 chr9 117733402 117733460 -6342712 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1483 862 263 43 58 chr9 117733465 117733743 -6342429 - B4 SINE B4 -16 276 3 4 1483 541 289 34 17 chr9 117734226 117734402 -6341770 - MTD LTR MaLR -240 179 1 4 1483 278 294 0 52 chr9 117735369 117735466 -6340706 - B1F SINE Alu -52 97 6 4 1483 654 246 68 11 chr9 117735607 117735784 -6340388 + RMER15-int LTR ERVL 4315 4501 -498 4 1483 1459 304 92 21 chr9 117735785 117736316 -6339856 + Lx8 LINE L1 6703 7271 -202 4 1483 390 210 24 24 chr9 117736543 117736626 -6339546 + B1F1 SINE Alu 66 148 -1 4 1483 1147 235 30 11 chr9 117737281 117737548 -6338624 + B4A SINE B4 1 272 -20 4 1483 1066 212 24 10 chr9 117738040 117738249 -6337923 - B3 SINE B2 0 216 5 4 1483 441 0 0 0 chr9 117738265 117738314 -6337858 + (TAA)n Simple_repeat Simple_repeat 2 50 0 4 1483 282 143 0 0 chr9 117738584 117738633 -6337539 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1483 888 244 75 75 chr9 117738634 117738926 -6337246 - B4A SINE B4 0 292 1 4 1483 184 111 22 22 chr9 117739011 117739057 -6337115 + A-rich Low_complexity Low_complexity 5 50 0 4 1483 191 133 0 22 chr9 117739062 117739108 -6337064 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 4 1483 405 0 0 0 chr9 117739120 117739165 -6337007 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1483 1917 111 61 83 chr9 117739568 117739930 -6336242 - ORR1B1 LTR MaLR 0 394 41 4 1483 200 35 35 0 chr9 117740041 117740070 -6336102 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1483 382 271 50 26 chr9 117740516 117740646 -6335526 - PB1D10 SINE Alu -11 136 11 4 1483 237 271 100 0 chr9 117740979 117741049 -6335123 + ID4 SINE ID 2 78 -5 4 1483 360 0 0 0 chr9 117741049 117741089 -6335083 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1483 450 0 0 0 chr9 117741398 117741448 -6334724 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1483 715 296 19 84 chr9 117741817 117742127 -6334045 + B4A SINE B4 3 292 0 4 1483 633 244 3 0 chr9 117742159 117742500 -6333672 + (CA)n Simple_repeat Simple_repeat 1 341 0 4 1483 302 211 0 0 chr9 117742508 117742560 -6333612 + HAL1-3A_ME LINE L1 1975 2026 -832 4 1483 355 295 81 84 chr9 117742986 117743301 -6332871 + MTEb LTR MaLR 42 371 -8 4 1483 656 233 74 19 chr9 117743738 117743996 -6332176 + MER33 DNA MER1_type 41 312 -12 4 1483 407 121 30 10 chr9 117743996 117744096 -6332076 + (TA)n Simple_repeat Simple_repeat 2 103 0 4 1483 5612 86 16 26 chr9 117744235 117745037 -6331135 + RLTR13C2 LTR ERVK 1 794 -14 4 1483 247 310 90 0 chr9 117745135 117745235 -6330937 + ORR1E LTR MaLR 53 161 -198 4 1483 618 198 66 127 chr9 117745314 117745344 -6330828 - B2_Mm2 SINE B2 -8 187 149 4 1483 1350 37 0 0 chr9 117745344 117745508 -6330664 + (TG)n Simple_repeat Simple_repeat 2 165 0 4 1483 830 198 66 127 chr9 117745508 117745674 -6330498 - B3A SINE B2 -44 154 3 4 1483 441 0 0 0 chr9 117746880 117746929 -6329243 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 4 1483 435 311 223 31 chr9 117747648 117747877 -6328295 + B4A SINE B4 2 274 -18 4 1483 513 254 0 0 chr9 117747981 117748154 -6328018 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1483 342 0 0 0 chr9 117748154 117748192 -6327980 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 4 1483 390 127 0 0 chr9 117748196 117748267 -6327905 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1483 311 169 15 106 chr9 117749524 117749590 -6326582 - ID_B1 SINE B4 0 224 165 4 1483 737 295 0 0 chr9 117749614 117749797 -6326375 + B3A SINE B2 1 183 -15 4 1483 662 273 90 5 chr9 117749838 117750026 -6326146 - B3 SINE B2 -4 212 9 4 1483 844 278 35 28 chr9 117750070 117750355 -6325817 - B4 SINE B4 -4 288 2 4 1483 189 304 0 0 chr9 117750375 117750421 -6325751 - MIR SINE MIR -6 256 211 4 1483 263 225 27 27 chr9 117750791 117750864 -6325308 + ORR1D2 LTR MaLR 296 368 -2 4 1483 268 254 283 39 chr9 117751787 117751967 -6324205 + 7SK RNA RNA 14 237 -94 4 1483 216 0 0 0 chr9 117752400 117752424 -6323748 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1483 692 310 15 4 chr9 117753060 117753271 -6322901 - B3A SINE B2 -2 214 1 4 1483 337 266 97 60 chr9 117753274 117753381 -6322791 - B1F SINE Alu -8 141 41 4 1483 642 189 129 0 chr9 117753376 117753525 -6322647 + MTD LTR MaLR 245 403 -16 4 1483 534 279 113 68 chr9 117753589 117753943 -6322229 - L1MCa LINE L1 -5942 566 197 4 1483 348 355 0 9 chr9 117754213 117754324 -6321848 + PB1D10 SINE Alu 1 110 -7 4 1483 285 221 33 67 chr9 117754528 117754678 -6321494 - RMER17A LTR ERVK -281 470 326 4 1483 180 0 0 0 chr9 117754680 117754700 -6321472 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1483 768 261 25 30 chr9 117754897 117755134 -6321038 + RMER15 LTR ERVL 337 572 -3 4 1483 444 77 0 0 chr9 117755720 117755785 -6320387 + (TAAAA)n Simple_repeat Simple_repeat 5 69 0 4 1483 297 250 152 0 chr9 117756303 117756415 -6319757 + B1F SINE Alu 5 133 -16 4 1483 423 0 0 0 chr9 117756677 117756724 -6319448 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1483 705 201 60 18 chr9 117756724 117756882 -6319290 - B3A SINE B2 -32 166 1 4 1483 327 130 0 0 chr9 117758124 117758178 -6317994 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1483 633 242 57 38 chr9 117758769 117758979 -6317193 + ID_B1 SINE B4 2 215 -9 5 1483 694 185 6 11 chr9 117759089 117759269 -6316903 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1483 793 300 97 67 chr9 117759944 117760688 -6315484 - L1MA6 LINE L1 -362 5938 5101 5 1483 287 297 13 13 chr9 117760747 117760822 -6315350 + B4 SINE B4 2 76 -216 5 1483 558 285 137 21 chr9 117760999 117761189 -6314983 - B4 SINE B4 -74 218 7 5 1483 402 204 227 29 chr9 117761722 117761894 -6314278 + B3 SINE B2 1 206 -10 5 1483 203 282 24 71 chr9 117762161 117762245 -6313927 + MIR SINE MIR 148 227 -35 5 1483 653 281 19 12 chr9 117762690 117762852 -6313320 + RSINE1 SINE B4 3 165 0 5 1483 408 316 65 32 chr9 117763460 117763614 -6312558 - B3A SINE B2 -4 194 36 5 1483 549 135 0 0 chr9 117763615 117763704 -6312468 + (TC)n Simple_repeat Simple_repeat 1 89 0 5 1483 512 280 231 37 chr9 117764048 117764318 -6311854 + MTEa LTR MaLR 2 326 -53 5 1483 564 15 0 0 chr9 117764318 117764383 -6311789 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 5 1483 512 274 109 48 chr9 117764383 117764424 -6311748 + MTEa LTR MaLR 327 368 -11 5 1483 617 349 25 36 chr9 117766802 117767081 -6309091 + B4 SINE B4 1 276 -16 5 1483 1347 76 0 0 chr9 117767143 117767483 -6308689 + (CA)n Simple_repeat Simple_repeat 1 340 0 5 1483 456 19 0 0 chr9 117767504 117767557 -6308615 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1483 312 94 0 0 chr9 117768444 117768497 -6307675 + (A)n Simple_repeat Simple_repeat 1 53 0 5 1483 289 327 69 0 chr9 117768838 117768939 -6307233 + MER117 DNA MER1_type 84 191 -6 5 1483 301 337 0 0 chr9 117769538 117769627 -6306545 + C-rich Low_complexity Low_complexity 1 89 0 5 1483 740 276 36 20 chr9 117769781 117769977 -6306195 + ID_B1 SINE B4 18 216 -8 5 1483 558 75 0 0 chr9 117769984 117770064 -6306108 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1483 816 270 32 18 chr9 117770688 117770967 -6305205 - B4A SINE B4 -8 284 2 5 1483 451 256 173 0 chr9 117770985 117771118 -6305054 + B3A SINE B2 5 160 -38 5 1483 682 154 17 8 chr9 117771185 117771303 -6304869 + PB1D9 SINE Alu 1 119 -1 5 1483 252 0 0 0 chr9 117771437 117771465 -6304707 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 5 1483 226 233 27 14 chr9 117772241 117772315 -6303857 + L1ME1 LINE L1 5319 5393 -2602 5 1483 249 206 72 14 chr9 117772748 117772817 -6303355 + L1ME1 LINE L1 6097 6169 -10 5 1483 1213 61 0 0 chr9 117772989 117773136 -6303036 - B1_Mus2 SINE Alu 0 147 1 5 1483 522 237 37 30 chr9 117773173 117773308 -6302864 - B3 SINE B2 0 216 81 5 1483 913 163 6 6 chr9 117773395 117773574 -6302598 + CT-rich Low_complexity Low_complexity 2 180 0 5 1483 219 138 29 44 chr9 117773574 117773642 -6302530 + (TTTG)n Simple_repeat Simple_repeat 1 67 0 5 1483 568 246 123 64 chr9 117773931 117774166 -6302006 + B4 SINE B4 40 288 -4 5 1483 1407 46 0 0 chr9 117774694 117774869 -6301303 + (TA)n Simple_repeat Simple_repeat 2 176 0 5 1483 732 289 35 39 chr9 117774903 117775159 -6301013 + B4A SINE B4 38 292 0 5 1483 1164 128 0 10 chr9 117775160 117775451 -6300721 + (CA)n Simple_repeat Simple_repeat 1 288 0 5 1483 327 276 153 83 chr9 117775752 117775993 -6300179 + ORR1E LTR MaLR 84 341 -18 5 1483 738 277 76 106 chr9 117776439 117776807 -6299365 - MTE2a LTR MaLR -15 364 8 5 1483 379 257 86 26 chr9 117777613 117777729 -6298443 + L1MC4a LINE L1 7760 7882 0 5 1483 294 29 0 0 chr9 117778647 117778682 -6297490 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1483 435 273 34 40 chr9 117778697 117778846 -6297326 + RSINE1 SINE B4 5 152 -13 5 1483 712 253 14 25 chr9 117779001 117779167 -6297005 + ID_B1 SINE B4 69 224 0 5 1483 201 39 0 0 chr9 117781681 117781707 -6294465 + (CTGGGG)n Simple_repeat Simple_repeat 6 31 0 5 1483 214 386 97 15 chr9 117784855 117784989 -6291183 + RSINE1 SINE B4 2 146 -19 5 1483 288 344 31 43 chr9 117786028 117786189 -6289983 + MER5A1 DNA MER1_type 2 160 -6 5 1483 281 336 98 15 chr9 117786299 117786432 -6289740 + RSINE1 SINE B4 9 152 -13 5 1483 297 51 0 0 chr9 117786435 117786474 -6289698 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1483 507 204 11 17 chr9 117786517 117786878 -6289294 + (CA)n Simple_repeat Simple_repeat 1 358 0 5 1483 313 256 143 11 chr9 117787370 117787461 -6288711 - B1F2 SINE Alu -7 142 40 5 1483 520 286 116 93 chr9 117787467 117787725 -6288447 - B4A SINE B4 -5 287 24 5 1483 299 157 0 19 chr9 117788033 117788085 -6288087 - ID_B1 SINE B4 0 224 174 5 1483 277 143 123 18 chr9 117788037 117788094 -6288078 - PB1 SINE Alu -3 124 62 5 1483 189 338 72 33 chr9 117788349 117788502 -6287670 - MER5B DNA MER1_type -16 162 4 5 1483 185 294 0 0 chr9 117788893 117788944 -6287228 + MER5A DNA MER1_type 4 54 -135 5 1483 332 209 39 50 chr9 117789177 117789358 -6286814 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1483 441 270 86 29 chr9 117789457 117789805 -6286367 - L1PB4 LINE L1 -1474 5986 5618 5 1483 708 238 34 15 chr9 117789887 117790092 -6286080 + MER3 DNA MER1_type 1 209 0 5 1483 195 186 0 0 chr9 117790767 117790810 -6285362 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1483 607 216 8 0 chr9 117791268 117791393 -6284779 + RSINE1 SINE B4 4 129 -36 5 1483 24 0 0 0 chr9 117791406 117791430 -6284742 + AT_rich Low_complexity Low_complexity 1 24 0 5 1483 974 63 0 0 chr9 117791487 117791614 -6284558 - B1_Mus1 SINE Alu -21 127 1 5 1483 555 16 0 0 chr9 117791708 117791772 -6284400 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1483 23 0 0 0 chr9 117791829 117791852 -6284320 + AT_rich Low_complexity Low_complexity 1 23 0 5 1483 473 307 67 40 chr9 117792208 117792432 -6283740 + B4 SINE B4 3 232 -60 5 1483 1401 196 68 14 chr9 117792378 117792668 -6283504 - MTD LTR MaLR -8 411 106 5 1483 1088 92 0 7 chr9 117792668 117792821 -6283351 + B2_Mm2 SINE B2 2 153 -42 5 1483 266 50 0 24 chr9 117792821 117792862 -6283310 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 1483 794 160 0 7 chr9 117792865 117793016 -6283156 + GA-rich Low_complexity Low_complexity 1 150 0 5 1483 572 234 9 0 chr9 117793017 117793124 -6283048 - MTD LTR MaLR -311 108 1 5 1483 477 0 0 0 chr9 117793373 117793426 -6282746 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1483 486 254 8 62 chr9 117794255 117794385 -6281787 - B1F1 SINE Alu -1 148 26 5 1483 1163 193 226 12 chr9 117794867 117795203 -6280969 - MTD LTR MaLR 0 419 12 5 1483 204 435 0 0 chr9 117795395 117795563 -6280609 + C-rich Low_complexity Low_complexity 2 169 0 5 1483 750 222 7 13 chr9 117795885 117796040 -6280132 + RSINE1 SINE B4 2 155 -10 5 1483 197 270 0 11 chr9 117796060 117796150 -6280022 + GA-rich Low_complexity Low_complexity 3 91 0 5 1483 519 271 65 0 chr9 117796477 117796632 -6279540 - RSINE1 SINE B4 0 165 1 5 1483 703 336 145 8 chr9 117796894 117797245 -6278927 - MLT1G1 LTR MaLR -140 439 41 5 1483 245 382 6 27 chr9 117797388 117797571 -6278601 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1483 282 344 13 19 chr9 117797667 117797824 -6278348 + (TG)n Simple_repeat Simple_repeat 1 156 0 5 1483 203 367 7 33 chr9 117797783 117797935 -6278237 + (TATATG)n Simple_repeat Simple_repeat 2 149 0 5 1483 883 306 17 58 chr9 117798085 117798166 -6278006 - B4A SINE B4 -8 284 205 5 1483 3249 65 2 0 chr9 117798166 117798565 -6277607 + MTB LTR MaLR 1 400 0 5 1483 883 306 17 58 chr9 117798565 117798778 -6277394 - B4A SINE B4 -88 204 2 5 1483 231 322 35 9 chr9 117799045 117799200 -6276972 + (TATATG)n Simple_repeat Simple_repeat 1 159 0 5 1483 694 240 154 28 chr9 117799281 117799534 -6276638 + B4A SINE B4 1 285 -7 5 1483 447 291 74 95 chr9 117800489 117800815 -6275357 - L1MB3 LINE L1 -53 6130 5812 5 1483 394 278 142 85 chr9 117800872 117801045 -6275127 - L1MB3 LINE L1 -365 5818 5661 5 1483 1018 192 47 0 chr9 117801045 117801259 -6274913 - Lx5 LINE L1 -3 7047 6824 5 1483 394 278 142 85 chr9 117801259 117801450 -6274722 - L1MB3 LINE L1 -523 5660 5433 5 1483 1112 287 49 49 chr9 117801592 117801999 -6274173 + MTD LTR MaLR 1 407 -12 5 1483 365 299 62 16 chr9 117802230 117802359 -6273813 - LTR90A LTR LTR -634 342 208 5 1483 202 375 33 43 chr9 117802381 117802565 -6273607 + MIRb SINE MIR 13 194 -74 5 1483 513 258 16 8 chr9 117802750 117802879 -6273293 + B1F SINE Alu 18 147 -2 5 1483 491 295 194 54 chr9 117803258 117803573 -6272599 + ORR1E LTR MaLR 1 359 0 5 1483 1461 151 4 0 chr9 117803625 117803850 -6272322 - URR1A DNA MER1_type 0 226 1 5 1483 1457 240 38 44 chr9 117805658 117806024 -6270148 - MTE2b LTR MaLR -15 364 1 5 1483 225 235 0 0 chr9 117806304 117806355 -6269817 + (CCCA)n Simple_repeat Simple_repeat 3 53 0 5 1483 605 322 8 37 chr9 117806629 117806871 -6269301 + ORR1E LTR MaLR 5 239 -120 5 1483 481 242 124 0 chr9 117807015 117807168 -6269004 + ORR1E-int LTR MaLR 33 204 -1376 5 1483 1493 320 61 108 chr9 117807218 117807707 -6268465 + ORR1E-int LTR MaLR 174 621 -749 5 1483 207 0 0 0 chr9 117807707 117807730 -6268442 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 5 1483 1711 270 81 89 chr9 117807730 117808526 -6267646 + ORR1E-int LTR MaLR 622 1938 -25 5 1483 399 311 0 0 chr9 117808495 117808601 -6267571 + ORR1E LTR MaLR 20 125 -234 5 1483 369 251 199 0 chr9 117808644 117808749 -6267423 + ORR1E LTR MaLR 251 365 -14 5 1483 197 284 142 38 chr9 117809715 117809821 -6266351 - MIRm SINE MIR -61 147 31 5 1483 328 313 81 0 chr9 117810484 117810583 -6265589 + MER3 DNA MER1_type 97 203 -6 5 1483 651 231 19 12 chr9 117810899 117811046 -6265126 + ID_B1 SINE B4 90 236 -56 5 1483 270 289 23 55 chr9 117812808 117812936 -6263236 + MLT1A1 LTR MaLR 20 143 -222 5 1483 2375 168 22 5 chr9 117812962 117813369 -6262803 + MTC LTR MaLR 6 419 -2 5 1483 272 305 24 63 chr9 117813437 117813563 -6262609 + MLT1A1 LTR MaLR 268 388 -20 5 1483 241 354 51 17 chr9 117815457 117815575 -6260597 - MLT1A0-int LTR MaLR -782 953 832 5 1483 429 317 240 31 chr9 117815723 117816169 -6260003 - MLT1A0-int LTR MaLR -1103 632 94 5 1483 267 256 102 11 chr9 117816219 117816334 -6259838 - MLT1A0-int LTR MaLR -1602 133 6 5 1483 381 282 75 96 chr9 117816346 117816585 -6259587 - MLT1A0 LTR MaLR -2 363 130 5 1483 363 44 0 0 chr9 117816618 117816663 -6259509 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1483 383 307 14 41 chr9 117816699 117816845 -6259327 + MLT1H LTR MaLR 133 274 -275 5 1483 274 274 75 69 chr9 117816871 117817022 -6259150 + MLT1H LTR MaLR 391 541 -8 5 1483 551 281 65 7 chr9 117817848 117818002 -6258170 - RSINE1 SINE B4 0 165 3 6 1483 235 333 95 43 chr9 117818002 117818207 -6257965 + RLTR22_Mur LTR ERVK 1251 1466 -382 6 1483 2393 76 29 0 chr9 117818410 117818724 -6257448 - ORR1A2 LTR MaLR 0 327 5 6 1483 830 135 135 92 chr9 117818780 117818945 -6257227 - ORR1A3 LTR MaLR -234 160 2 6 1483 889 316 57 36 chr9 117819062 117819169 -6257003 + Lx8 LINE L1 6799 6911 -562 6 1483 1544 160 119 108 chr9 117819169 117819547 -6256625 + ORR1C2 LTR MaLR 1 382 -2 6 1483 889 316 57 36 chr9 117819547 117819859 -6256313 + Lx8 LINE L1 6912 7227 -246 6 1483 325 277 155 35 chr9 117819878 117819994 -6256178 - ERVL-int LTR ERVL -683 5074 4945 6 1483 1237 259 96 14 chr9 117820038 117820383 -6255789 - MTEa LTR MaLR 0 379 7 6 1483 640 272 39 5 chr9 117820589 117820792 -6255380 - ERVL-B4-int LTR ERVL -2614 3100 2891 6 1483 439 302 93 12 chr9 117820811 117820972 -6255200 + ERVL-B4-int LTR ERVL 4172 4345 -1369 6 1483 762 254 106 17 chr9 117821054 117821290 -6254882 - ERVL-B4-int LTR ERVL -2894 2863 2607 6 1483 466 221 23 0 chr9 117821302 117821388 -6254784 + ID_B1 SINE B4 129 216 -8 6 1483 346 223 73 21 chr9 117821405 117821501 -6254671 - ERVL-B4-int LTR ERVL -3173 2541 2441 6 1483 674 277 139 82 chr9 117821546 117821849 -6254323 + MLT1A1 LTR MaLR 89 408 0 6 1483 686 319 60 21 chr9 117821849 117822233 -6253939 - ERVL-B4-int LTR ERVL -3261 2496 2098 6 1483 411 286 77 7 chr9 117822461 117822616 -6253556 - ERVL-B4-int LTR ERVL -3943 1771 1606 6 1483 994 288 35 100 chr9 117822616 117823045 -6253127 - MTD LTR MaLR 0 419 19 6 1483 1260 274 140 57 chr9 117823099 117823383 -6252789 - ERVL-B4-int LTR ERVL -4134 1580 1256 6 1483 423 0 0 0 chr9 117823383 117823430 -6252742 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1483 1260 274 140 57 chr9 117823430 117823829 -6252343 - ERVL-B4-int LTR ERVL -4459 1255 840 6 1483 268 188 112 45 chr9 117823843 117823932 -6252240 - MLT2B4 LTR ERVL -460 96 2 6 1483 578 237 136 19 chr9 117823935 117824090 -6252082 + B3A SINE B2 4 176 -22 6 1483 1077 105 0 0 chr9 117825088 117825355 -6250817 + (TG)n Simple_repeat Simple_repeat 1 267 0 6 1483 252 284 68 0 chr9 117825652 117825726 -6250446 - ID4 SINE ID -3 80 2 6 1483 299 330 160 0 chr9 117825737 117825843 -6250329 - PB1 SINE Alu -3 124 2 6 1483 749 281 38 58 chr9 117826772 117827063 -6249109 - B4 SINE B4 -4 288 4 6 1483 1272 296 87 37 chr9 117827269 117827788 -6248384 - MLT1F LTR MaLR 0 548 4 6 1483 1764 164 73 48 chr9 117828147 117828328 -6247844 + ORR1C2 LTR MaLR 5 172 -212 6 1483 264 59 0 0 chr9 117828328 117828362 -6247810 + (CCTG)n Simple_repeat Simple_repeat 2 35 0 6 1483 1764 164 73 48 chr9 117828362 117828551 -6247621 + ORR1C2 LTR MaLR 173 384 0 6 1483 198 0 0 0 chr9 117831311 117831333 -6244839 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 1483 450 0 0 0 chr9 117831480 117831530 -6244642 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1484 303 93 0 0 chr9 117836159 117836202 -6239970 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1484 279 0 0 0 chr9 117836202 117836232 -6239940 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1484 28 29 0 0 chr9 117837500 117837535 -6238637 + AT_rich Low_complexity Low_complexity 1 35 0 6 1484 8863 96 55 28 chr9 117838362 117839508 -6236664 - Lx2 LINE L1 -1 6996 5808 6 1484 1364 80 0 38 chr9 117839508 117839674 -6236498 + B2_Mm2 SINE B2 1 164 -31 6 1484 378 0 0 0 chr9 117839674 117839716 -6236456 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6 1484 950 77 131 0 chr9 117839718 117839848 -6236324 + B1_Mus1 SINE Alu 2 148 0 6 1484 1364 80 0 38 chr9 117839848 117839861 -6236311 + B2_Mm2 SINE B2 165 176 -19 6 1484 8863 129 17 26 chr9 117839861 117840602 -6235570 - Lx2 LINE L1 -1190 5807 5071 6 1484 623 179 116 6 chr9 117840600 117840788 -6235384 + L1_Mur1 LINE L1 4658 4862 -1015 6 1484 327 266 0 0 chr9 117841592 117841671 -6234501 - B4 SINE B4 -213 79 1 6 1484 211 255 0 0 chr9 117842327 117842374 -6233798 - MIRm SINE MIR -2 274 228 6 1484 369 230 126 110 chr9 117842780 117842907 -6233265 - RSINE1 SINE B4 0 292 78 6 1484 266 164 26 52 chr9 117843686 117843802 -6232370 + GA-rich Low_complexity Low_complexity 3 115 0 6 1484 1010 276 122 33 chr9 117845194 117845710 -6230462 - Lx8 LINE L1 -2 7471 6910 6 1484 333 288 0 12 chr9 117845819 117845900 -6230272 - ID2 SINE ID -3 80 1 6 1484 842 219 41 15 chr9 117846048 117846243 -6229929 + Lx9 LINE L1 6814 7013 -631 6 1484 2041 96 21 3 chr9 117846856 117847139 -6229033 + ORR1A2 LTR MaLR 1 288 -39 6 1484 1967 128 0 3 chr9 117847139 117847428 -6228744 + L1Md_F2 LINE L1 220 507 -6131 6 1484 1231 76 12 0 chr9 117847424 117847596 -6228576 + L1Md_F2 LINE L1 639 812 -5826 6 1484 32513 75 7 4 chr9 117847592 117852051 -6224121 + L1Md_F2 LINE L1 1117 5586 -297 6 1484 7580 81 7 43 chr9 117852052 117853082 -6223090 + L1Md_F2 LINE L1 5588 6580 -2 6 1484 445 19 0 0 chr9 117853082 117853135 -6223037 + ORR1B1 LTR MaLR 342 394 0 6 1484 1224 138 259 17 chr9 117853644 117853945 -6222227 + ORR1D1 LTR MaLR 1 374 0 6 1484 1693 226 18 18 chr9 117854255 117854651 -6221521 - Lx6 LINE L1 -26 7434 7039 6 1484 275 284 42 0 chr9 117854829 117854924 -6221248 + (CATA)n Simple_repeat Simple_repeat 4 102 0 6 1484 225 365 26 17 chr9 117855451 117855568 -6220604 + RSINE1 SINE B4 43 160 -5 6 1484 4307 138 85 23 chr9 117855843 117856575 -6219597 + Lx3C LINE L1 6198 6974 -2 6 1484 408 308 0 17 chr9 117856668 117856787 -6219385 + PB1D10 SINE Alu 1 117 0 6 1484 22 0 0 0 chr9 117856899 117856921 -6219251 + AT_rich Low_complexity Low_complexity 1 22 0 6 1484 495 0 0 0 chr9 117857646 117857701 -6218471 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1484 249 222 143 0 chr9 117857874 117857937 -6218235 + L1ME3A LINE L1 5920 5991 -182 6 1484 12669 76 14 4 chr9 117858146 117860489 -6215683 - L1Md_F2 LINE L1 0 6582 4214 6 1484 29098 65 2 7 chr9 117860484 117865003 -6211169 - L1Md_F2 LINE L1 0 6582 2086 6 1484 695 185 22 7 chr9 117867141 117867277 -6208895 - ID_B1 SINE B4 -6 218 81 6 1484 207 100 0 0 chr9 117867902 117867932 -6208240 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1484 270 217 21 65 chr9 117867932 117868046 -6208126 + PB1D10 SINE Alu 1 120 0 6 1484 29 60 0 0 chr9 117868447 117868497 -6207675 + AT_rich Low_complexity Low_complexity 1 50 0 6 1484 908 95 0 0 chr9 117868871 117868997 -6207175 + B1_Mus1 SINE Alu 23 148 0 6 1484 276 30 0 0 chr9 117869021 117869054 -6207118 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1484 455 286 142 9 chr9 117869849 117870068 -6206104 + Lx8 LINE L1 7222 7469 -4 6 1484 1413 295 160 34 chr9 117870449 117871480 -6204692 + L1MCa LINE L1 6 1166 -5342 6 1484 279 243 43 40 chr9 117871526 117871643 -6204529 + B1F1 SINE Alu 1 120 0 6 1484 374 307 184 5 chr9 117871952 117872339 -6203833 + L1MC1 LINE L1 5816 6271 -62 6 1484 407 299 70 35 chr9 117872980 117873122 -6203050 + RSINE1 SINE B4 5 151 -14 6 1484 432 0 0 0 chr9 117874093 117874141 -6202031 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1484 2613 88 19 19 chr9 117874969 117875330 -6200842 + Lx LINE L1 6287 6647 -7 6 1484 599 278 26 13 chr9 117875403 117875556 -6200616 - RSINE1 SINE B4 -6 159 5 6 1484 564 238 79 0 chr9 117875592 117875718 -6200454 + B1_Mur4 SINE Alu 6 141 -9 6 1484 343 333 92 76 chr9 117876455 117876795 -6199377 - L2a LINE L2 -262 3164 2814 6 1484 309 235 120 20 chr9 117876795 117876895 -6199277 - PB1D10 SINE Alu -7 110 1 6 1484 204 398 60 95 chr9 117876895 117877034 -6199138 - L2a LINE L2 -606 2813 2683 6 1484 371 282 78 0 chr9 117877594 117877697 -6198475 + B3 SINE B2 1 111 -105 6 1484 755 191 14 0 chr9 117878195 117878336 -6197836 + B1_Mur3 SINE Alu 7 149 0 6 1484 4712 200 70 17 chr9 117878717 117878817 -6197355 - Lx9 LINE L1 -34 7610 7480 6 1484 357 62 0 0 chr9 117878817 117878865 -6197307 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1484 4712 200 70 17 chr9 117878865 117879694 -6196478 - Lx9 LINE L1 -165 7479 6628 6 1484 3104 96 20 40 chr9 117879694 117879904 -6196268 + Lx LINE L1 6196 6394 -260 6 1484 3148 79 27 0 chr9 117879904 117880310 -6195862 + BGLII LTR ERVK 5 421 0 6 1484 3104 96 20 40 chr9 117880310 117880553 -6195619 + Lx LINE L1 6395 6640 -14 6 1484 1032 72 0 0 chr9 117880556 117880694 -6195478 + (GAAA)n Simple_repeat Simple_repeat 4 141 0 6 1484 4712 200 70 17 chr9 117880694 117880794 -6195378 - Lx9 LINE L1 -1017 6627 6530 6 1484 226 190 37 25 chr9 117880801 117880882 -6195290 - Lx7 LINE L1 -1 7695 7614 6 1484 1835 210 102 15 chr9 117880893 117881295 -6194877 - Lx7 LINE L1 -828 6868 6432 6 1484 184 158 35 0 chr9 117881364 117881421 -6194751 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1484 401 365 93 42 chr9 117881548 117881837 -6194335 - LTR78 LTR ERV1 -797 507 204 6 1484 243 0 0 0 chr9 117881926 117881953 -6194219 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1484 387 0 0 0 chr9 117881953 117881995 -6194177 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1484 958 249 19 19 chr9 117882187 117882400 -6193772 - B3 SINE B2 0 216 4 6 1484 215 299 30 20 chr9 117882592 117882691 -6193481 + PB1D10 SINE Alu 13 112 -5 6 1484 346 250 0 15 chr9 117882707 117882772 -6193400 + ID4_ SINE ID 18 81 -2 6 1484 320 331 134 0 chr9 117883559 117883686 -6192486 - MamGypLTR1b LTR Gypsy -290 492 349 6 1484 1030 233 0 15 chr9 117884488 117884684 -6191488 - B3 SINE B2 -6 210 18 6 1484 339 25 0 0 chr9 117884775 117884815 -6191357 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 6 1484 314 220 17 0 chr9 117884817 117884876 -6191296 - tRNA-Ala-GCY_ tRNA tRNA -5 70 11 6 1484 310 293 13 0 chr9 117884876 117884891 -6191281 - ID4 SINE ID -6 76 2 6 1484 450 256 47 16 chr9 117884907 117885034 -6191138 - B1F SINE Alu 0 149 19 6 1484 289 311 75 75 chr9 117885034 117885059 -6191113 - B4A SINE B4 -56 203 77 6 1484 231 282 143 17 chr9 117887024 117887143 -6189029 + MIRm SINE MIR 27 160 -116 6 1484 424 254 154 34 chr9 117887304 117887479 -6188693 - MIR SINE MIR -34 228 33 6 1484 4992 96 83 6 chr9 117887585 117888935 -6187237 + L1_Mur1 LINE L1 3 1881 -4005 6 1484 3092 31 0 0 chr9 117888935 117889289 -6186883 + IAPEY2_LTR LTR ERVK 1 354 -3 6 1484 642 218 32 6 chr9 117889294 117889451 -6186721 + IAPEY3-int LTR ERVK 1 161 -7519 6 1484 8958 117 11 37 chr9 117889452 117890949 -6185223 + IAPEY3-int LTR ERVK 524 1982 -5698 6 1484 3291 66 9 0 chr9 117890926 117891363 -6184809 + IAPEY3-int LTR ERVK 2238 2678 -5002 6 1484 188 399 36 14 chr9 117891363 117891503 -6184669 + L3b LINE CR1 311 453 -29 6 1484 2716 68 62 1 chr9 117891503 117892160 -6184012 + IAPEY3-int LTR ERVK 6984 7680 0 6 1484 3105 42 0 0 chr9 117892160 117892517 -6183655 + IAPEY2_LTR LTR ERVK 1 357 0 6 1484 27710 70 13 4 chr9 117892517 117896516 -6179656 + Lx3_Mus LINE L1 1876 5907 -1102 6 1484 333 0 0 0 chr9 117896516 117896553 -6179619 + (TAA)n Simple_repeat Simple_repeat 2 38 0 6 1484 8546 102 54 16 chr9 117896553 117897624 -6178548 + Lx3_Mus LINE L1 5908 7008 -1 6 1484 239 233 41 0 chr9 117897733 117897806 -6178366 + L1MB3 LINE L1 6101 6176 -7 7 1484 1115 219 0 19 chr9 117898036 117898246 -6177926 - B3 SINE B2 -4 212 7 7 1484 216 0 0 0 chr9 117898791 117898815 -6177357 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1484 194 267 245 10 chr9 117899790 117899892 -6176280 + MIRb SINE MIR 7 132 -136 7 1484 735 12 0 0 chr9 117899988 117900072 -6176100 + (TC)n Simple_repeat Simple_repeat 1 84 0 7 1484 360 0 0 0 chr9 117900072 117900111 -6176061 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1484 21 0 0 0 chr9 117900416 117900437 -6175735 + AT_rich Low_complexity Low_complexity 1 21 0 7 1484 276 284 68 10 chr9 117900448 117900551 -6175621 + B3 SINE B2 106 214 -2 7 1484 745 296 146 11 chr9 117900644 117900753 -6175419 - L1M4c LINE L1 -1769 4607 4484 7 1484 405 0 0 0 chr9 117900753 117900798 -6175374 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1484 745 296 146 11 chr9 117900798 117901217 -6174955 - L1M4c LINE L1 -1893 4483 4008 7 1484 559 239 0 9 chr9 117901395 117901509 -6174663 + B3 SINE B2 1 113 -103 7 1484 346 281 21 0 chr9 117901548 117901644 -6174528 + B3 SINE B2 119 216 0 7 1484 1096 265 147 35 chr9 117901678 117902472 -6173700 - L1M4c LINE L1 -4240 2144 1262 7 1484 396 0 0 0 chr9 117902703 117902747 -6173425 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 1484 4809 55 3 10 chr9 117902897 117903498 -6172674 - L1_Mus2 LINE L1 -4 6562 5966 7 1484 5899 94 18 8 chr9 117903498 117904430 -6171742 - L1Md_F LINE L1 -3392 2491 1550 7 1484 339 100 0 0 chr9 117904432 117904482 -6171690 - MusHAL1 LINE L1 -2020 692 643 7 1484 1317 177 62 3 chr9 117904479 117904768 -6171404 - L1Md_F LINE L1 -5634 982 677 7 1484 813 283 70 54 chr9 117904865 117905325 -6170847 - L1M4c LINE L1 -5800 584 118 7 1484 2646 169 2 52 chr9 117905610 117906170 -6170002 + L1VL4 LINE L1 185 716 -5586 7 1484 23 0 0 0 chr9 117906889 117906912 -6169260 + AT_rich Low_complexity Low_complexity 1 23 0 7 1484 276 100 0 0 chr9 117908449 117908489 -6167683 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1484 396 40 0 0 chr9 117908499 117908549 -6167623 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1484 230 164 18 0 chr9 117908550 117908605 -6167567 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 7 1484 1136 68 23 0 chr9 117908621 117908797 -6167375 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7 1484 31 0 0 0 chr9 117909193 117909224 -6166948 + AT_rich Low_complexity Low_complexity 1 31 0 7 1484 962 190 0 13 chr9 117909230 117909400 -6166772 + B3 SINE B2 48 216 0 7 1484 709 176 7 75 chr9 117909877 117910024 -6166148 + B1_Mur1 SINE Alu 11 147 -2 7 1484 295 232 0 0 chr9 117911065 117911121 -6165051 - PB1D7 SINE Alu -46 74 19 7 1484 260 270 32 0 chr9 117911077 117911140 -6165032 - ID_B1 SINE B4 -81 143 79 7 1484 313 233 58 0 chr9 117911614 117911700 -6164472 + PB1D10 SINE Alu 25 115 -2 7 1484 1143 51 0 0 chr9 117911731 117911869 -6164303 + B1_Mus2 SINE Alu 1 138 -9 7 1484 303 85 0 0 chr9 117911869 117911916 -6164256 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1484 744 251 148 8 chr9 117911924 117912161 -6164011 + MLT1B LTR MaLR 119 388 -2 7 1484 22 35 0 0 chr9 117912338 117912367 -6163805 + AT_rich Low_complexity Low_complexity 1 29 0 7 1484 486 294 22 0 chr9 117913746 117913882 -6162290 - MLT1B LTR MaLR -7 383 245 7 1484 39450 5 1 0 chr9 117913945 117920502 -6155670 - L1Md_A LINE L1 0 6582 18 7 1484 492 62 0 0 chr9 117921034 117921098 -6155074 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1484 497 314 68 20 chr9 117922189 117922440 -6153732 - MLT1B LTR MaLR -158 309 35 7 1484 201 181 26 53 chr9 117922905 117922981 -6153191 + (TAAA)n Simple_repeat Simple_repeat 1 74 0 7 1484 202 75 49 24 chr9 117923307 117923348 -6152824 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 7 1484 225 196 0 0 chr9 117923648 117923694 -6152478 + CT-rich Low_complexity Low_complexity 3 48 0 7 1484 1256 74 11 0 chr9 117923694 117923870 -6152302 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 7 1484 201 283 160 50 chr9 117924003 117924122 -6152050 - MIRc SINE MIR -113 155 24 7 1484 653 208 29 70 chr9 117924457 117924628 -6151544 + RSINE1 SINE B4 2 165 0 7 1484 591 293 55 47 chr9 117925183 117925584 -6150588 - L1MA4 LINE L1 -393 5907 5504 7 1484 19908 121 27 23 chr9 117925612 117930834 -6145338 - L1Md_F LINE L1 -603 5553 387 7 1484 8691 166 60 41 chr9 117930903 117934330 -6141842 - L1Md_F2 LINE L1 0 6582 3089 7 1484 320 325 79 0 chr9 117934316 117934568 -6141604 - L1M2 LINE L1 -3045 3098 2827 7 1484 38 39 0 0 chr9 117934895 117934947 -6141225 + AT_rich Low_complexity Low_complexity 1 52 0 7 1484 180 77 0 0 chr9 117935605 117935631 -6140541 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1484 248 273 86 26 chr9 117935713 117935937 -6140235 - L1M5 LINE L1 -485 5639 5397 7 1484 335 346 175 26 chr9 117935983 117936372 -6139800 - L1M5 LINE L1 -828 5318 4872 7 1484 21 0 0 0 chr9 117936557 117936578 -6139594 + AT_rich Low_complexity Low_complexity 1 21 0 7 1484 628 310 6 28 chr9 117937167 117937191 -6138981 - B3 SINE B2 -6 210 187 7 1484 339 85 0 0 chr9 117937191 117937238 -6138934 + (TATG)n Simple_repeat Simple_repeat 4 50 0 7 1484 628 310 6 28 chr9 117937238 117937389 -6138783 - B3 SINE B2 -30 186 39 7 1484 986 226 29 0 chr9 117937391 117937595 -6138577 + B3 SINE B2 6 215 -1 7 1484 336 292 184 20 chr9 117937616 117937897 -6138275 + Charlie7 DNA MER1_type 112 442 -2170 7 1484 302 0 26 0 chr9 117937897 117937935 -6138237 + (TAA)n Simple_repeat Simple_repeat 3 41 0 7 1484 336 292 184 20 chr9 117937935 117937947 -6138225 + Charlie7 DNA MER1_type 443 453 -2159 7 1484 776 191 153 28 chr9 117938717 117938932 -6137240 - B4A SINE B4 -47 245 4 7 1484 335 279 116 16 chr9 117939057 117939246 -6136926 + Kanga1 DNA Tc2 1499 1706 -39 7 1484 657 312 69 72 chr9 117939266 117939629 -6136543 + MLT1A0 LTR MaLR 1 362 -3 7 1484 414 0 0 0 chr9 117940349 117940395 -6135777 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1484 687 140 21 0 chr9 117940773 117940916 -6135256 + GA-rich Low_complexity Low_complexity 2 147 0 7 1484 220 296 112 0 chr9 117941047 117941145 -6135027 - B1_Mur2 SINE Alu -3 146 38 7 1484 499 312 28 28 chr9 117942118 117942263 -6133909 + RSINE1 SINE B4 21 165 0 7 1484 391 336 40 71 chr9 117942404 117942657 -6133515 - MLT1A LTR MaLR -4 370 126 7 1484 533 263 0 49 chr9 117942812 117942956 -6133216 + B1F SINE Alu 5 141 -8 7 1484 827 281 59 12 chr9 117943523 117943896 -6132276 + L1MA4A LINE L1 5653 6034 -257 7 1484 29 28 0 0 chr9 117943953 117943989 -6132183 + AT_rich Low_complexity Low_complexity 1 36 0 7 1484 665 276 5 53 chr9 117944705 117944912 -6131260 + B3A SINE B2 2 198 0 7 1484 639 270 59 24 chr9 117945070 117945385 -6130787 - L1MA4 LINE L1 -262 5927 5595 7 1484 208 167 0 23 chr9 117945396 117945439 -6130733 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 7 1484 887 261 121 25 chr9 117945520 117945842 -6130330 + MTEa LTR MaLR 6 358 -21 7 1484 1824 253 195 10 chr9 117945837 117946515 -6129657 + MTEa-int LTR MaLR 764 1566 -14 7 1484 643 281 17 6 chr9 117946513 117946690 -6129482 + MTEa LTR MaLR 6 184 -195 7 1484 1941 176 10 25 chr9 117946690 117947087 -6129085 + RLTR31B_Mm LTR ERVK 1 391 -166 7 1484 460 249 71 38 chr9 117947130 117947281 -6128891 + MTEa LTR MaLR 190 347 -32 7 1484 207 0 0 0 chr9 117947281 117947304 -6128868 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1484 460 249 71 38 chr9 117947304 117947336 -6128836 + MTEa LTR MaLR 348 379 0 7 1484 1217 55 0 0 chr9 117947430 117947576 -6128596 + B1_Mus1 SINE Alu 2 147 -1 7 1484 876 133 0 0 chr9 117947578 117947721 -6128451 + (GAA)n Simple_repeat Simple_repeat 2 144 0 7 1484 714 183 42 7 chr9 117948084 117948227 -6127945 + B3 SINE B2 2 149 -67 7 1484 276 100 0 0 chr9 117948233 117948273 -6127899 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1484 374 269 164 30 chr9 117948730 117948895 -6127277 + ID_B1 SINE B4 38 224 0 7 1484 252 0 0 0 chr9 117949027 117949055 -6127117 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1484 21 0 0 0 chr9 117949818 117949839 -6126333 + GC_rich Low_complexity Low_complexity 1 21 0 7 1484 261 0 0 0 chr9 117950248 117950277 -6125895 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1484 328 147 208 59 chr9 117951161 117951262 -6124910 + PB1D9 SINE Alu 5 120 0 7 1484 197 264 19 19 chr9 117951939 117951993 -6124179 + MIR SINE MIR 84 137 -71 7 1484 1041 266 50 13 chr9 117952499 117952800 -6123372 + Lx8 LINE L1 6815 7126 -347 7 1484 25 0 0 0 chr9 117953556 117953581 -6122591 + AT_rich Low_complexity Low_complexity 1 25 0 7 1484 2321 158 66 9 chr9 117954146 117954599 -6121573 + RLTR12B LTR ERVK 1 479 -49 7 1484 355 228 28 65 chr9 117954762 117954885 -6121287 - B1F SINE Alu -15 134 5 7 1484 252 200 0 0 chr9 117956999 117957064 -6119108 + T-rich Low_complexity Low_complexity 1 65 0 7 1484 682 284 86 23 chr9 117957111 117957331 -6118841 - B4A SINE B4 -58 234 1 7 1484 22 0 0 0 chr9 117958670 117958692 -6117480 + AT_rich Low_complexity Low_complexity 1 22 0 7 1484 351 331 0 0 chr9 117959366 117959538 -6116634 + (CCTAA)n Simple_repeat Simple_repeat 2 173 0 7 1484 421 337 0 0 chr9 117959472 117959829 -6116343 + (CAACC)n Simple_repeat Simple_repeat 1 357 0 7 1484 398 338 0 0 chr9 117959591 117959913 -6116259 + (CCTAA)n Simple_repeat Simple_repeat 1 322 0 7 1484 1602 191 79 25 chr9 117960858 117961213 -6114959 - ORR1D1 LTR MaLR 0 374 1 7 1484 297 75 0 0 chr9 117961975 117962015 -6114157 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 7 1484 577 208 40 8 chr9 117963720 117963846 -6112326 - B1F SINE Alu -7 142 13 7 1484 207 0 0 0 chr9 117964044 117964067 -6112105 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1485 342 191 14 58 chr9 117965139 117965278 -6110894 + GA-rich Low_complexity Low_complexity 3 135 0 7 1485 222 291 7 39 chr9 117965390 117965544 -6110628 + A-rich Low_complexity Low_complexity 6 154 0 7 1485 1102 103 81 0 chr9 117965662 117965836 -6110336 + B2_Mm2 SINE B2 3 190 -5 7 1485 216 279 9 139 chr9 117966318 117966426 -6109746 - RSINE1 SINE B4 -11 154 61 7 1485 211 276 197 0 chr9 117966519 117966595 -6109577 - B3 SINE B2 -69 147 57 7 1485 558 0 0 0 chr9 117968789 117968851 -6107321 + (GTTTG)n Simple_repeat Simple_repeat 2 63 0 8 1485 268 196 21 0 chr9 117968851 117968920 -6107252 - B1_Mur4 SINE Alu -8 142 40 8 1485 186 43 0 0 chr9 117968947 117968970 -6107202 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1485 422 81 0 16 chr9 117968971 117969034 -6107138 - B1_Mus1 SINE Alu -60 88 27 8 1485 180 0 0 0 chr9 117969368 117969388 -6106784 + (G)n Simple_repeat Simple_repeat 1 20 0 8 1485 257 299 45 52 chr9 117969879 117970013 -6106159 + RSINE1 SINE B4 3 135 -30 8 1485 387 0 0 0 chr9 117970035 117970078 -6106094 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1485 24 32 0 0 chr9 117972663 117972694 -6103478 + AT_rich Low_complexity Low_complexity 1 31 0 8 1485 22 35 0 0 chr9 117973639 117973668 -6102504 + AT_rich Low_complexity Low_complexity 1 29 0 8 1485 23 33 0 0 chr9 117974208 117974238 -6101934 + AT_rich Low_complexity Low_complexity 1 30 0 8 1485 5739 169 47 19 chr9 117976024 117977105 -6099067 - MERVL_2A-int LTR ERVL -2110 3651 2541 8 1485 514 161 0 21 chr9 117977106 117977201 -6098971 + ORR1D1 LTR MaLR 1 93 -281 8 1485 817 156 68 51 chr9 117977201 117977235 -6098937 + ORR1D1 LTR MaLR 195 228 -146 8 1485 255 31 0 0 chr9 117977235 117977267 -6098905 + (CCTG)n Simple_repeat Simple_repeat 3 34 0 8 1485 817 156 68 51 chr9 117977267 117977408 -6098764 + ORR1D1 LTR MaLR 229 373 -1 8 1485 2667 201 76 5 chr9 117977409 117977964 -6098208 - MERVL_2A-int LTR ERVL -3217 2544 1949 8 1485 201 39 0 0 chr9 117977964 117977990 -6098182 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 8 1485 2667 201 76 5 chr9 117977990 117978010 -6098162 - MERVL_2A-int LTR ERVL -3813 1948 1929 8 1485 616 175 18 0 chr9 117978015 117978129 -6098043 + MERVL_2A-int LTR ERVL 5636 5751 -10 8 1485 1768 177 160 5 chr9 117978131 117978580 -6097592 + MT2A LTR ERVL 1 519 -14 8 1485 221 305 9 120 chr9 117978962 117979070 -6097102 - PB1D10 SINE Alu -21 96 1 8 1485 275 197 66 0 chr9 117980781 117980842 -6095330 + RMER10A LTR ERVL 353 417 -25 8 1485 1540 255 10 19 chr9 117981070 117981482 -6094690 + RLTR16 LTR ERVK 1 408 -97 8 1485 273 57 0 0 chr9 117981577 117981612 -6094560 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 8 1485 427 204 126 0 chr9 117982189 117982292 -6093880 - PB1D9 SINE Alu -1 119 4 8 1485 394 277 14 49 chr9 117982325 117982469 -6093703 + B1F SINE Alu 3 141 -8 8 1485 3380 254 101 41 chr9 117982570 117983801 -6092371 + Lx5 LINE L1 5640 6944 -106 8 1485 1635 153 98 3 chr9 117984591 117984919 -6091253 + ORR1B2 LTR MaLR 1 359 -8 8 1485 6620 161 119 4 chr9 117984923 117986277 -6089895 + ORR1B2-int LTR MaLR 1 1509 0 8 1485 1492 162 164 6 chr9 117986277 117986594 -6089578 + ORR1B2 LTR MaLR 1 367 0 8 1485 297 0 0 0 chr9 117988356 117988389 -6087783 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1485 2618 90 11 11 chr9 117988683 117989064 -6087108 + Lx LINE L1 6270 6650 -4 8 1485 705 156 49 8 chr9 117989211 117989334 -6086838 + B1_Mur3 SINE Alu 22 149 0 8 1485 1423 123 173 0 chr9 117989557 117989800 -6086372 + Lx4A LINE L1 6773 7057 -1 8 1485 1133 74 0 22 chr9 117991307 117991486 -6084686 - L1Md_F3 LINE L1 0 6584 6410 8 1485 183 80 0 0 chr9 117992462 117992487 -6083685 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1485 22 70 0 0 chr9 117994121 117994164 -6082008 + AT_rich Low_complexity Low_complexity 1 43 0 8 1485 210 37 0 0 chr9 117994214 117994241 -6081931 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 1485 391 207 0 136 chr9 117995452 117995479 -6080693 + MT2B LTR ERVL 144 151 -450 8 1485 785 139 8 0 chr9 117995479 117995601 -6080571 + B1_Mur4 SINE Alu 2 124 -26 8 1485 702 207 139 57 chr9 117996320 117996550 -6079622 + Lx9 LINE L1 7395 7643 -1 8 1485 24 0 0 0 chr9 117996551 117996575 -6079597 + AT_rich Low_complexity Low_complexity 1 24 0 8 1485 506 183 7 71 chr9 117996588 117996729 -6079443 + RMER10B LTR ERVL 202 333 -65 8 1485 528 93 0 0 chr9 117996729 117996804 -6079368 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1485 1336 45 0 114 chr9 118003345 118003546 -6072626 + B2_Mm2 SINE B2 2 179 -16 1 1485 618 14 0 0 chr9 118003546 118003617 -6072555 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 2 1485 351 0 0 0 chr9 118003617 118003656 -6072516 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 3 1485 948 18 0 0 chr9 118003656 118003766 -6072406 + (GAGAA)n Simple_repeat Simple_repeat 5 114 0 4 1485 760 164 14 0 chr9 118004375 118004515 -6071657 - B1_Mus1 SINE Alu -6 142 1 5 1485 246 95 0 0 chr9 118005530 118005572 -6070600 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1485 972 45 15 0 chr9 118009404 118009536 -6066636 - B1_Mus2 SINE Alu 0 147 14 7 1485 227 222 74 0 chr9 118009734 118009788 -6066384 - ID4_ SINE ID -1 82 25 8 1485 485 198 50 0 chr9 118009800 118009901 -6066271 - PB1D10 SINE Alu -6 111 6 9 1485 276 182 48 83 chr9 118009826 118009910 -6066262 - MT2B2 LTR ERVL -346 238 158 1 1485 351 0 0 0 chr9 118010004 118010043 -6066129 + (GGGGA)n Simple_repeat Simple_repeat 2 40 0 1 1485 531 203 37 45 chr9 118010250 118010384 -6065788 + B1_Mur3 SINE Alu 2 134 -15 1 1485 186 71 0 0 chr9 118010394 118010422 -6065750 + (G)n Simple_repeat Simple_repeat 1 28 0 1 1485 233 210 153 47 chr9 118010885 118010970 -6065202 - RLTR20B2 LTR ERVK 0 563 470 1 1485 216 0 0 0 chr9 118010971 118010995 -6065177 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1485 2095 148 49 12 chr9 118011428 118011839 -6064333 - RLTR20B2 LTR ERVK -134 426 1 1 1485 262 309 11 11 chr9 118011956 118012051 -6064121 - Tigger7 DNA MER2_type -8 2483 2389 1 1485 313 279 117 0 chr9 118012123 118012234 -6063938 - Tigger7 DNA MER2_type -2147 344 221 1 1485 1989 104 98 0 chr9 118012340 118012637 -6063535 - ORR1A3 LTR MaLR 0 326 1 1 1485 491 215 28 0 chr9 118012982 118013089 -6063083 + PB1D10 SINE Alu 1 110 -7 1 1485 735 253 93 0 chr9 118013624 118013818 -6062354 + B4A SINE B4 8 219 -73 1 1485 324 0 0 0 chr9 118013844 118013880 -6062292 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1485 25 0 0 0 chr9 118013933 118013958 -6062214 + AT_rich Low_complexity Low_complexity 1 25 0 2 1485 25 0 0 0 chr9 118014291 118014316 -6061856 + AT_rich Low_complexity Low_complexity 1 25 0 2 1485 328 250 106 9 chr9 118015090 118015203 -6060969 + B4A SINE B4 3 126 -166 2 1485 273 340 192 8 chr9 118015669 118015924 -6060248 + MER68 LTR ERVL 4 305 -258 2 1485 189 121 0 0 chr9 118016418 118016451 -6059721 + (TACTG)n Simple_repeat Simple_repeat 1 33 0 2 1485 411 56 0 0 chr9 118017123 118017177 -6058995 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1485 279 346 0 9 chr9 118017231 118017339 -6058833 - PB1D10 SINE Alu -9 108 2 2 1485 264 244 0 0 chr9 118017351 118017396 -6058776 + B1_Mus2 SINE Alu 1 45 -102 2 1485 225 65 0 0 chr9 118018069 118018100 -6058072 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1485 183 42 0 0 chr9 118018505 118018529 -6057643 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1485 1030 23 69 0 chr9 118018529 118018659 -6057513 - B1_Mm SINE Alu -8 139 1 3 1485 879 118 0 0 chr9 118019851 118019986 -6056186 + (GA)n Simple_repeat Simple_repeat 1 135 0 3 1485 756 255 38 9 chr9 118019999 118020209 -6055963 - B3 SINE B2 0 216 1 3 1485 1084 22 7 0 chr9 118020255 118020393 -6055779 - B1_Mus1 SINE Alu 0 148 10 3 1485 21 0 0 0 chr9 118024706 118024727 -6051445 + AT_rich Low_complexity Low_complexity 1 21 0 3 1485 34068 80 16 11 chr9 118025008 118030495 -6045677 + L1Md_F2 LINE L1 69 5585 -298 3 1485 8346 43 1 2 chr9 118030496 118031493 -6044679 + L1Md_F2 LINE L1 5587 6582 0 3 1485 207 293 13 0 chr9 118031759 118031834 -6044338 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 1485 766 209 99 30 chr9 118031934 118032136 -6044036 - B3 SINE B2 0 216 1 3 1485 398 301 140 47 chr9 118032269 118033657 -6042515 + L1MD2 LINE L1 2757 4327 -1819 3 1485 1070 175 64 10 chr9 118033914 118034116 -6042056 + B3 SINE B2 3 215 -1 4 1485 224 277 0 0 chr9 118034146 118034193 -6041979 + B1F1 SINE Alu 1 47 -102 4 1485 671 255 97 93 chr9 118034229 118034519 -6041653 + B4 SINE B4 2 292 0 4 1485 316 271 107 15 chr9 118034542 118034673 -6041499 + L1MDa LINE L1 2263 2405 -4228 4 1485 427 294 73 22 chr9 118035060 118035134 -6041038 + L1MDa LINE L1 4014 4092 -2445 4 1485 261 57 0 0 chr9 118035134 118035169 -6041003 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1485 427 285 91 25 chr9 118035169 118035444 -6040728 + L1MDa LINE L1 4093 4389 -2148 4 1485 235 213 66 0 chr9 118035630 118035691 -6040481 + ID4 SINE ID 15 79 -4 4 1485 226 342 78 13 chr9 118035729 118035883 -6040289 + L1MD2 LINE L1 6193 6356 -3 4 1485 248 270 0 0 chr9 118035998 118036061 -6040111 + L1MD2 LINE L1 5128 5190 -956 3 1485 354 235 76 0 chr9 118036277 118036396 -6039776 + L1MC LINE L1 5181 5308 -838 4 1485 200 232 14 28 chr9 118036517 118036588 -6039584 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1485 515 307 117 44 chr9 118036612 118037160 -6039012 + L1MD2 LINE L1 5298 5885 -474 3 1485 3798 37 5 0 chr9 118037287 118037721 -6038451 + RLTR10C LTR ERVK 1 436 0 4 1485 2691 95 53 3 chr9 118037721 118038101 -6038071 + MMERVK10C-int LTR ERVK 1 399 -7182 4 1485 20075 44 0 1 chr9 118038099 118040445 -6035727 + MMERVK10C-int LTR ERVK 870 3212 -4369 4 1485 14640 35 0 0 chr9 118040430 118042104 -6034068 + MMERVK10C-int LTR ERVK 4137 5810 -1771 4 1485 8279 32 0 0 chr9 118042095 118043026 -6033146 + MMERVK10C-int LTR ERVK 6651 7581 0 4 1485 3826 32 5 0 chr9 118043026 118043460 -6032712 + RLTR10C LTR ERVK 1 436 0 4 1485 246 255 75 32 chr9 118043787 118043899 -6032273 + L1MD1 LINE L1 6134 6226 -16 5 1485 251 67 44 0 chr9 118044508 118044553 -6031619 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1485 892 234 99 21 chr9 118044711 118044997 -6031175 - RMER19A LTR ERVK 0 902 474 5 1485 243 125 0 0 chr9 118045913 118045953 -6030219 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1485 757 332 89 28 chr9 118046576 118047059 -6029113 + Lx8 LINE L1 6826 7341 -132 5 1485 315 0 0 0 chr9 118047059 118047094 -6029078 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1485 757 332 89 28 chr9 118047094 118047218 -6028954 + Lx8 LINE L1 7342 7469 -4 5 1485 853 222 4 138 chr9 118047814 118048060 -6028112 - B3 SINE B2 0 216 4 5 1485 545 180 121 57 chr9 118048238 118048379 -6027793 - B1_Mur4 SINE Alu 0 150 1 5 1485 219 36 0 0 chr9 118049123 118049151 -6027021 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1485 2272 37 0 0 chr9 118049337 118049610 -6026562 - IAPEz-int LTR ERVK -5878 603 331 5 1485 1119 130 156 113 chr9 118050766 118051156 -6025016 + RMER17C LTR ERVK 1 407 -3 6 1485 1160 61 7 0 chr9 118051158 118051305 -6024867 + B1_Mus1 SINE Alu 1 148 0 6 1485 228 264 221 19 chr9 118051485 118051643 -6024529 + LTR16A1 LTR ERVL 209 398 -58 6 1485 634 197 164 13 chr9 118051645 118051876 -6024296 + RLTR15 LTR ERVK 1 266 -93 6 1485 3375 46 0 21 chr9 118051876 118052298 -6023874 + IAPEz-int LTR ERVK 250 662 -5819 6 1485 2782 58 0 3 chr9 118052298 118052641 -6023531 + IAPEz-int LTR ERVK 1359 1700 -4781 6 1485 6399 67 11 17 chr9 118052634 118053468 -6022704 + IAPEz-int LTR ERVK 5651 6479 -2 6 1485 3965 17 35 2 chr9 118053470 118053930 -6022242 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1485 277 264 28 0 chr9 118053930 118054002 -6022170 + B1F1 SINE Alu 41 114 -35 6 1485 286 215 40 137 chr9 118054057 118054181 -6021991 + PB1D10 SINE Alu 4 115 -2 6 1485 225 0 0 0 chr9 118054598 118054623 -6021549 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 6 1485 509 175 48 27 chr9 118055008 118055155 -6021017 + LTR37B LTR ERV1 319 468 0 6 1485 1347 78 10 0 chr9 118055438 118056210 -6019962 + (CATA)n Simple_repeat Simple_repeat 1 780 0 6 1485 327 25 0 0 chr9 118056227 118056267 -6019905 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1485 1185 68 0 0 chr9 118057109 118057257 -6018915 + B1_Mus1 SINE Alu 1 148 0 7 1485 825 169 182 10 chr9 118057422 118057614 -6018558 + URR1B DNA MER1_type 1 225 0 7 1485 230 256 38 13 chr9 118058112 118058191 -6017981 + MIRb SINE MIR 92 172 -96 7 1485 1151 55 7 14 chr9 118058376 118058524 -6017648 + B1_Mus1 SINE Alu 2 148 0 7 1485 692 22 0 0 chr9 118061284 118061373 -6014799 - B2_Mm2 SINE B2 -105 90 2 7 1485 722 249 21 27 chr9 118061373 118061559 -6014613 + MTD LTR MaLR 235 419 0 7 1485 432 0 0 0 chr9 118061843 118061891 -6014281 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1485 1065 278 110 30 chr9 118061915 118062157 -6014015 - Lx8 LINE L1 -874 6599 6342 7 1485 405 0 0 0 chr9 118062157 118062202 -6013970 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 7 1485 1065 278 110 30 chr9 118062202 118062386 -6013786 - Lx8 LINE L1 -1132 6341 6140 7 1485 249 243 43 0 chr9 118062813 118062883 -6013289 - L1ME3A LINE L1 -257 5916 5844 8 1485 775 201 0 0 chr9 118063462 118063606 -6012566 + B1_Mur1 SINE Alu 1 144 -5 8 1485 714 232 5 62 chr9 118063630 118063823 -6012349 + B3A SINE B2 14 195 -3 8 1485 2166 197 58 11 chr9 118064519 118064966 -6011206 - RMER19B LTR ERVK 0 902 435 8 1485 1273 219 70 75 chr9 118065123 118065494 -6010678 + MTD LTR MaLR 42 410 -9 8 1485 4530 63 7 0 chr9 118066797 118067368 -6008804 - L1_Mus3 LINE L1 -9 6629 6055 8 1485 787 234 58 5 chr9 118069150 118069356 -6006816 - ID_B1 SINE B4 -7 217 1 8 1485 495 318 84 45 chr9 118069491 118070120 -6006052 + Charlie2b DNA MER1_type 1874 2527 -255 8 1485 958 150 0 13 chr9 118070129 118070278 -6005894 - B1_Mur1 SINE Alu -1 148 2 8 1485 465 117 0 0 chr9 118071197 118071257 -6004915 - Lx3C LINE L1 -470 6506 6447 8 1485 2599 109 15 25 chr9 118071241 118071637 -6004535 + Lx3C LINE L1 6522 6913 -63 8 1485 182 105 26 0 chr9 118071912 118071950 -6004222 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 9 1485 356 194 64 11 chr9 118071955 118072049 -6004123 - ID_B1 SINE B4 -2 222 124 9 1485 627 216 29 29 chr9 118073382 118073520 -6002652 + ID_B1 SINE B4 86 223 -1 9 1485 270 219 55 0 chr9 118074724 118074797 -6001375 - B2_Mm2 SINE B2 -117 78 2 9 1485 612 150 32 40 chr9 118075322 118075447 -6000725 + B1_Mur3 SINE Alu 26 149 0 9 1485 181 298 60 0 chr9 118075614 118075698 -6000474 - MIRb SINE MIR -103 165 77 9 1485 1298 20 0 0 chr9 118075705 118075852 -6000320 + B1_Mm SINE Alu 1 147 0 9 1485 566 263 0 29 chr9 118075887 118076024 -6000148 + ID_B1 SINE B4 88 220 -4 9 1485 613 275 119 10 chr9 118076359 118076561 -5999611 - ID_B1 SINE B4 0 224 1 9 1485 503 323 58 35 chr9 118076756 118077067 -5999105 - MLT1H-int LTR MaLR -960 449 132 9 1485 371 309 70 45 chr9 118079794 118079950 -5996222 + RSINE1 SINE B4 4 163 -2 1 1485 2020 144 60 14 chr9 118080409 118080774 -5995398 - ORR1B1 LTR MaLR -12 382 1 1 1485 368 171 53 0 chr9 118080930 118081006 -5995166 - PB1D9 SINE Alu 0 120 41 1 1485 622 198 389 16 chr9 118081364 118081669 -5994503 - MTD LTR MaLR 0 419 1 1 1485 442 302 133 17 chr9 118081813 118082221 -5993951 + MLT1H1 LTR MaLR 59 555 0 1 1485 198 209 0 0 chr9 118082882 118082925 -5993247 + CT-rich Low_complexity Low_complexity 4 46 0 1 1485 25 51 0 0 chr9 118082970 118083009 -5993163 + AT_rich Low_complexity Low_complexity 1 39 0 1 1485 390 303 194 47 chr9 118083568 118083821 -5992351 + B4 SINE B4 2 291 -1 1 1485 194 128 43 0 chr9 118083845 118083892 -5992280 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 1 1485 449 216 172 0 chr9 118084473 118084589 -5991583 + ID_B1 SINE B4 81 216 -8 1 1485 468 213 114 30 chr9 118085183 118085314 -5990858 - B1_Mur2 SINE Alu -3 146 5 1 1485 216 0 0 0 chr9 118085388 118085412 -5990760 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1485 426 325 58 42 chr9 118085540 118085781 -5990391 + MLT1C LTR MaLR 71 315 -152 1 1485 233 29 0 29 chr9 118086287 118086322 -5989850 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1485 966 201 14 63 chr9 118086443 118086650 -5989522 + ID_B1 SINE B4 1 197 -27 1 1485 416 244 170 9 chr9 118087275 118087410 -5988762 - ID_B1 SINE B4 -49 243 87 1 1485 1050 254 22 4 chr9 118087521 118087790 -5988382 + B4A SINE B4 1 274 -18 1 1485 2759 122 58 19 chr9 118087997 118088480 -5987692 - Lx LINE L1 0 6654 6153 1 1485 275 277 11 117 chr9 118089235 118089329 -5986843 - B1F1 SINE Alu -64 85 2 1 1485 1393 105 5 0 chr9 118089351 118089542 -5986630 - B2_Mm1a SINE B2 0 193 2 1 1485 732 56 0 61 chr9 118089562 118089676 -5986496 - B1_Mm SINE Alu 0 147 41 1 1485 221 159 0 0 chr9 118089677 118089721 -5986451 + CT-rich Low_complexity Low_complexity 88 131 0 1 1485 371 51 0 33 chr9 118089721 118089782 -5986390 - PB1D9 SINE Alu -61 59 1 1 1485 546 301 64 5 chr9 118089842 118090046 -5986126 - ID_B1 SINE B4 -8 216 1 1 1485 582 221 87 0 chr9 118091243 118091392 -5984780 - RSINE1 SINE B4 -1 164 3 1 1485 1408 30 107 0 chr9 118091846 118092043 -5984129 + ORR1A1 LTR MaLR 129 346 0 1 1485 275 304 168 10 chr9 118092460 118092528 -5983644 + B4A SINE B4 2 84 -208 1 1485 3941 155 55 6 chr9 118092528 118093173 -5982999 + RLTR17 LTR ERVK 1 672 -20 1 1485 505 27 0 39 chr9 118093173 118093250 -5982922 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 1 1485 3941 155 55 6 chr9 118093250 118093264 -5982908 + RLTR17 LTR ERVK 673 691 -1 1 1485 275 304 168 10 chr9 118093264 118093398 -5982774 + B4A SINE B4 85 235 -57 1 1485 361 321 0 0 chr9 118095574 118095686 -5980486 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 185 520 319 36 45 chr9 118095770 118095990 -5980182 - B4 SINE B4 -74 218 1 1 1486 261 167 0 0 chr9 118096308 118096362 -5979810 + CT-rich Low_complexity Low_complexity 3 56 0 1 1486 282 116 0 0 chr9 118096544 118096587 -5979585 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1486 279 0 0 0 chr9 118097229 118097260 -5978912 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1486 291 175 0 0 chr9 118097581 118097638 -5978534 + GA-rich Low_complexity Low_complexity 3 59 0 1 1486 644 206 36 42 chr9 118097652 118097819 -5978353 - B3A SINE B2 -24 174 9 1 1486 416 19 0 19 chr9 118098047 118098101 -5978071 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1486 236 299 139 9 chr9 118098101 118098209 -5977963 - B4A SINE B4 -23 269 148 1 1486 715 117 0 18 chr9 118098256 118098369 -5977803 + RLTR20B3 LTR ERVK 388 498 -79 1 1486 1420 73 10 15 chr9 118098535 118098730 -5977442 + B2_Mm2 SINE B2 2 195 0 1 1486 315 232 0 0 chr9 118099073 118099142 -5977030 + ID_B1 SINE B4 115 183 -41 1 1486 609 100 58 12 chr9 118099417 118099589 -5976583 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1486 219 36 0 0 chr9 118099623 118099651 -5976521 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1486 249 108 0 0 chr9 118100236 118100273 -5975899 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 1486 317 299 95 25 chr9 118100661 118100819 -5975353 + MLT1J1 LTR MaLR 153 321 -123 1 1486 401 288 38 0 chr9 118103360 118103492 -5972680 - ID_B1 SINE B4 -7 217 81 1 1486 645 289 20 25 chr9 118104557 118104756 -5971416 + B3A SINE B2 1 198 0 1 1486 418 271 56 32 chr9 118105044 118105170 -5971002 - RSINE1 SINE B4 -33 132 4 1 1486 344 241 11 0 chr9 118105240 118105327 -5970845 - L1MA4 LINE L1 -411 5889 5802 1 1486 336 198 116 0 chr9 118107191 118107277 -5968895 - Charlie5 DNA MER1_type -2503 121 26 1 1486 460 245 0 20 chr9 118107351 118107451 -5968721 + B3A SINE B2 1 98 -100 1 1486 467 252 14 7 chr9 118107703 118108000 -5968172 + (TG)n Simple_repeat Simple_repeat 1 299 0 1 1486 201 311 0 16 chr9 118108008 118108070 -5968102 + (CATG)n Simple_repeat Simple_repeat 1 61 0 1 1486 316 211 15 161 chr9 118108113 118108187 -5967985 - RCHARR1 DNA MER1_type -2 972 908 1 1486 180 0 0 0 chr9 118108187 118108207 -5967965 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1486 316 211 15 161 chr9 118108207 118108262 -5967910 - RCHARR1 DNA MER1_type -67 907 862 1 1486 426 323 66 15 chr9 118108280 118108478 -5967694 - RCHARR1 DNA MER1_type -739 235 28 1 1486 180 0 0 0 chr9 118108720 118108740 -5967432 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 1 1486 618 301 30 113 chr9 118108830 118109227 -5966945 + MTE2a LTR MaLR 15 378 -1 1 1486 396 257 40 0 chr9 118109464 118109565 -5966607 - PB1D10 SINE Alu -12 105 1 1 1486 285 100 71 0 chr9 118109575 118109645 -5966527 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 1 1486 709 272 29 14 chr9 118109676 118109885 -5966287 - Lx8 LINE L1 -86 7387 7176 1 1486 519 221 199 19 chr9 118110013 118110055 -5966117 + B4A SINE B4 41 84 -208 1 1486 279 0 0 0 chr9 118110055 118110086 -5966086 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1486 519 221 199 19 chr9 118110086 118110204 -5965968 + B4A SINE B4 85 229 -63 1 1486 395 332 45 45 chr9 118110198 118110323 -5965849 + B4A SINE B4 8 132 -160 1 1486 2573 52 6 191 chr9 118110323 118110799 -5965373 - RLTR10 LTR ERVK -2 388 1 1 1486 395 314 46 103 chr9 118110799 118110975 -5965197 + B4A SINE B4 132 292 0 1 1486 237 139 0 0 chr9 118110976 118111019 -5965153 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1486 302 257 0 13 chr9 118111030 118111105 -5965067 + B4 SINE B4 214 287 -5 1 1486 746 232 37 0 chr9 118111118 118111282 -5964890 + B3 SINE B2 47 216 0 1 1486 374 184 45 13 chr9 118112045 118112199 -5963973 + GA-rich Low_complexity Low_complexity 2 160 0 1 1486 439 245 14 21 chr9 118112559 118112672 -5963500 - B1_Mur3 SINE Alu -36 114 1 1 1486 536 278 19 19 chr9 118112992 118113146 -5963026 - RSINE1 SINE B4 -10 155 2 1 1486 246 367 26 109 chr9 118113179 118113214 -5962958 - MLT1J LTR MaLR -258 254 222 1 1486 279 122 0 0 chr9 118113214 118113263 -5962909 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1486 246 367 26 109 chr9 118113263 118113383 -5962789 - MLT1J LTR MaLR -291 221 112 1 1486 275 169 0 22 chr9 118113427 118113518 -5962654 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 1 1486 715 318 122 15 chr9 118113562 118113964 -5962208 - MER70A LTR ERVL -27 445 1 1 1486 567 246 144 17 chr9 118114443 118114617 -5961555 - MTEb LTR MaLR 0 379 184 1 1486 775 287 63 34 chr9 118114838 118115049 -5961123 - MTE2b LTR MaLR -174 247 1 1 1486 24 0 0 0 chr9 118115089 118115113 -5961059 + AT_rich Low_complexity Low_complexity 1 24 0 1 1486 374 341 18 0 chr9 118115665 118115832 -5960340 + (CCCA)n Simple_repeat Simple_repeat 3 172 0 1 1486 220 173 0 37 chr9 118116400 118116454 -5959718 + CT-rich Low_complexity Low_complexity 2 53 0 1 1486 741 273 104 37 chr9 118116605 118116875 -5959297 + B4A SINE B4 5 292 0 1 1486 360 43 0 0 chr9 118116879 118116925 -5959247 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 1 1486 231 61 0 0 chr9 118116931 118116964 -5959208 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1486 199 281 76 30 chr9 118117250 118117316 -5958856 - L4 LINE RTE -1303 726 658 1 1486 360 0 0 0 chr9 118117331 118117371 -5958801 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1486 207 0 0 0 chr9 118117382 118117405 -5958767 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1486 3312 42 10 14 chr9 118117560 118117973 -5958199 + IAPLTR2a LTR ERVK 1 411 0 1 1486 607 115 16 124 chr9 118117974 118118103 -5958069 + IAPEz-int LTR ERVK 9 123 -6358 1 1486 234 267 0 0 chr9 118118103 118118148 -5958024 + RLTR27 LTR ERVK 231 275 -34 1 1486 230 327 0 0 chr9 118118174 118118229 -5957943 + RLTR27 LTR ERVK 221 275 -34 1 1486 3622 67 4 21 chr9 118118232 118118888 -5957284 + IAPEz-int LTR ERVK 94 662 -5819 1 1486 2419 69 68 3 chr9 118118888 118119209 -5956963 + IAPEz-int LTR ERVK 1359 1700 -4781 1 1486 6626 60 11 6 chr9 118119202 118120027 -5956145 + IAPEz-int LTR ERVK 5651 6479 -2 1 1486 2824 58 79 0 chr9 118120029 118120410 -5955762 + IAPLTR2a LTR ERVK 1 411 0 1 1486 766 282 138 48 chr9 118120697 118120940 -5955232 + B4A SINE B4 1 269 -23 1 1486 567 81 0 0 chr9 118120940 118121026 -5955146 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1486 766 282 138 48 chr9 118121026 118121050 -5955122 + B4A SINE B4 270 292 0 1 1486 1028 195 31 5 chr9 118121103 118121299 -5954873 + B3 SINE B2 1 201 -15 1 1486 26 0 0 0 chr9 118121303 118121329 -5954843 + AT_rich Low_complexity Low_complexity 1 26 0 1 1486 278 301 36 12 chr9 118121367 118121451 -5954721 + PB1D7 SINE Alu 32 117 -3 1 1486 543 275 80 0 chr9 118121496 118121634 -5954538 - ID_B1 SINE B4 -36 188 40 1 1486 664 239 53 18 chr9 118122737 118122907 -5953265 + B4 SINE B4 11 186 -106 1 1486 210 267 96 122 chr9 118122823 118122938 -5953234 + B1_Mur4 SINE Alu 16 127 -23 1 1486 661 307 39 35 chr9 118123336 118123596 -5952576 + B4A SINE B4 30 290 -2 1 1486 234 81 0 0 chr9 118123603 118123640 -5952532 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1486 210 275 138 0 chr9 118123701 118123781 -5952391 + L2a LINE L2 3304 3394 -32 1 1486 1861 95 11 4 chr9 118123834 118124098 -5952074 + MTB_Mm LTR MaLR 134 399 -1 1 1486 5633 131 117 79 chr9 118124098 118124479 -5951693 + MTB_Mm-int LTR MaLR 2 394 -864 1 1486 1177 55 0 7 chr9 118124479 118124625 -5951547 + B1_Mm SINE Alu 3 147 0 1 1486 5633 131 117 79 chr9 118124625 118125454 -5950718 + MTB_Mm-int LTR MaLR 395 1258 0 1 1486 3098 81 2 19 chr9 118125454 118125868 -5950304 + MTB_Mm LTR MaLR 1 407 0 1 1486 525 294 32 99 chr9 118126033 118126346 -5949826 + B4A SINE B4 1 292 0 2 1486 487 266 82 7 chr9 118126419 118126724 -5949448 - L1MB7 LINE L1 -88 6095 5667 2 1486 351 262 211 36 chr9 118126889 118127055 -5949117 - MLT1D LTR MaLR -56 449 255 2 1486 4663 33 11 0 chr9 118127323 118127871 -5948301 + L1Md_F3 LINE L1 6031 6584 0 2 1486 627 273 67 10 chr9 118127887 118128017 -5948155 + L1MC1 LINE L1 5545 5693 -640 2 1486 405 0 0 0 chr9 118128017 118128062 -5948110 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1486 627 306 123 16 chr9 118128062 118128293 -5947879 + L1MC1 LINE L1 5688 5959 -1826 2 1486 1002 260 191 32 chr9 118128465 118128906 -5947266 + Lx8 LINE L1 6919 7429 -44 2 1486 1075 15 80 22 chr9 118129169 118129306 -5946866 + B1_Mm SINE Alu 2 146 -1 2 1486 281 51 67 17 chr9 118129306 118129366 -5946806 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 2 1486 221 0 35 0 chr9 118129377 118129406 -5946766 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 2 1486 567 172 0 0 chr9 118129433 118129567 -5946605 + (TG)n Simple_repeat Simple_repeat 1 134 0 2 1486 391 265 177 79 chr9 118129571 118129837 -5946335 - B4 SINE B4 0 292 1 2 1486 282 277 130 42 chr9 118129942 118130157 -5946015 + L1MA5 LINE L1 5685 5918 -382 2 1486 324 0 0 0 chr9 118131454 118131490 -5944682 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1486 402 320 182 30 chr9 118131533 118131736 -5944436 + B4A SINE B4 3 236 -56 2 1486 248 343 9 0 chr9 118131783 118131888 -5944284 + L1MC4 LINE L1 7416 7521 -361 2 1486 207 100 0 0 chr9 118131929 118131959 -5944213 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 1486 576 98 28 64 chr9 118131961 118131998 -5944174 - B1_Mus2 SINE Alu -1 146 114 2 1486 2422 98 6 0 chr9 118131998 118132323 -5943849 - ORR1A2 LTR MaLR 0 327 1 2 1486 576 98 28 64 chr9 118132323 118132394 -5943778 - B1_Mus2 SINE Alu -34 113 42 2 1486 234 0 0 158 chr9 118132397 118132511 -5943661 + (CTCTG)n Simple_repeat Simple_repeat 5 100 0 2 1486 305 155 33 33 chr9 118132512 118132572 -5943600 - B1_Mus1 SINE Alu -88 60 1 2 1486 326 371 97 34 chr9 118132627 118133009 -5943163 + L1MC4 LINE L1 7617 8022 -20 2 1486 460 273 18 0 chr9 118133028 118133138 -5943034 + PB1D10 SINE Alu 1 112 -5 2 1486 1207 43 0 0 chr9 118133153 118133294 -5942878 - B1_Mm SINE Alu -5 142 2 2 1486 585 267 17 28 chr9 118133435 118133643 -5942529 + B4A SINE B4 10 292 0 2 1486 184 183 56 0 chr9 118133644 118133715 -5942457 + (CATA)n Simple_repeat Simple_repeat 4 78 0 2 1486 441 0 0 0 chr9 118134352 118134401 -5941771 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1486 1394 211 113 29 chr9 118135076 118135422 -5940750 + MTEa LTR MaLR 1 375 -4 2 1486 221 304 0 0 chr9 118135833 118135889 -5940283 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1486 492 267 19 9 chr9 118135897 118136003 -5940169 + B1F2 SINE Alu 2 108 -41 2 1486 1077 102 0 0 chr9 118136003 118136160 -5940012 + (TAGA)n Simple_repeat Simple_repeat 2 158 0 2 1486 244 301 27 0 chr9 118136177 118136250 -5939922 + GA-rich Low_complexity Low_complexity 3 77 0 2 1486 207 0 0 0 chr9 118137351 118137374 -5938798 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1486 280 280 27 0 chr9 118138634 118138707 -5937465 - ID4_ SINE ID -7 76 4 2 1486 252 0 0 0 chr9 118138739 118138767 -5937405 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2 1486 902 160 194 0 chr9 118138769 118138944 -5937228 - ID_B1 SINE B4 -13 211 3 2 1486 232 214 36 0 chr9 118139114 118139170 -5937002 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2 1486 584 108 50 0 chr9 118139176 118139315 -5936857 + (CATA)n Simple_repeat Simple_repeat 3 148 0 2 1486 248 272 74 36 chr9 118139538 118139660 -5936512 + B1F SINE Alu 13 140 -9 2 1486 906 275 46 4 chr9 118139677 118139918 -5936254 + B4 SINE B4 28 278 -14 2 1486 692 256 47 6 chr9 118140180 118140349 -5935823 + B3A SINE B2 23 198 0 2 1486 405 0 0 0 chr9 118140444 118140489 -5935683 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1486 554 214 79 8 chr9 118140491 118140618 -5935554 - B1_Mur1 SINE Alu -12 137 2 2 1486 223 238 17 125 chr9 118140621 118140656 -5935516 + B4A SINE B4 66 169 -120 2 1486 316 224 0 28 chr9 118140656 118140738 -5935434 + B1F SINE Alu 6 84 -36 2 1486 986 253 66 50 chr9 118140760 118141080 -5935092 - ORR1E LTR MaLR -9 350 26 2 1486 300 210 0 16 chr9 118141092 118141155 -5935017 + B1F SINE Alu 86 147 -2 2 1486 582 278 104 30 chr9 118141653 118141901 -5934271 + MTEa LTR MaLR 96 374 -5 2 1486 180 288 17 17 chr9 118141906 118141966 -5934206 - MIRb SINE MIR -101 167 108 2 1486 258 269 98 25 chr9 118142797 118142919 -5933253 - RMER15 LTR ERVL -13 562 432 2 1486 186 343 42 14 chr9 118143860 118143931 -5932241 - MIRc SINE MIR -101 167 95 2 1486 360 287 188 32 chr9 118143979 118144379 -5931793 + L1M4b LINE L1 1075 1536 -5798 2 1486 302 288 138 38 chr9 118144436 118144595 -5931577 + B4A SINE B4 106 280 -12 2 1486 355 305 156 34 chr9 118144668 118145265 -5930907 + L1M4b LINE L1 1520 2189 -5145 2 1486 3145 62 20 0 chr9 118145324 118145714 -5930458 - MTB LTR MaLR 0 400 3 2 1486 228 148 0 0 chr9 118145844 118145870 -5930302 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1486 1245 28 14 0 chr9 118145870 118146015 -5930157 + B1_Mus1 SINE Alu 2 148 0 2 1486 228 148 0 0 chr9 118146015 118146042 -5930130 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1486 322 281 102 91 chr9 118146434 118146916 -5929256 + L1M4b LINE L1 2560 3046 -4288 2 1486 405 269 0 0 chr9 118147004 118147097 -5929075 + B3A SINE B2 1 93 -105 2 1486 750 103 8 8 chr9 118147080 118147198 -5928974 + ORR1B1 LTR MaLR 16 133 -261 2 1486 306 242 32 0 chr9 118147206 118147330 -5928842 + (ATGGTG)n Simple_repeat Simple_repeat 2 129 0 2 1486 1547 149 38 8 chr9 118147338 118147601 -5928571 + ORR1B1 LTR MaLR 124 394 0 2 1486 777 248 174 25 chr9 118147653 118147865 -5928307 + Lx8 LINE L1 7094 7328 -145 2 1486 198 0 0 0 chr9 118147865 118147887 -5928285 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 2 1486 777 248 174 25 chr9 118147887 118147996 -5928176 + Lx8 LINE L1 7329 7463 -10 2 1486 1936 272 74 29 chr9 118148000 118148583 -5927589 - RMER19C LTR ERVK -2 609 1 2 1486 289 291 64 69 chr9 118148690 118148893 -5927279 + L1M4b LINE L1 2973 3174 -3832 2 1486 403 238 67 0 chr9 118148966 118149071 -5927101 + PB1D7 SINE Alu 1 112 -8 2 1486 841 202 95 0 chr9 118149087 118149255 -5926917 + B3 SINE B2 5 188 -28 2 1486 244 290 10 20 chr9 118149263 118149365 -5926807 + GA-rich Low_complexity Low_complexity 4 104 0 2 1486 612 40 0 0 chr9 118149488 118149563 -5926609 + (GGA)n Simple_repeat Simple_repeat 3 77 0 2 1486 772 99 14 0 chr9 118149569 118149711 -5926461 + (GA)n Simple_repeat Simple_repeat 1 144 0 2 1486 232 329 12 0 chr9 118149794 118149879 -5926293 - L1M4 LINE L1 -1023 5123 5038 2 1486 276 245 18 30 chr9 118149923 118150048 -5926124 - L1MC2 LINE L1 -92 6252 6186 2 1486 229 255 0 68 chr9 118150690 118150749 -5925423 - MLT1A0 LTR MaLR -336 255 201 2 1486 433 140 9 45 chr9 118151094 118151206 -5924966 + CT-rich Low_complexity Low_complexity 2 109 0 2 1486 446 231 125 0 chr9 118151556 118151660 -5924512 - RSINE1 SINE B4 -40 125 9 2 1486 499 299 20 20 chr9 118151741 118151891 -5924281 - MLT1A0 LTR MaLR -176 189 40 2 1486 315 0 0 0 chr9 118152214 118152249 -5923923 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1486 203 161 0 0 chr9 118152249 118152280 -5923892 + (CATA)n Simple_repeat Simple_repeat 4 34 0 2 1486 309 51 0 0 chr9 118152336 118152375 -5923797 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1486 279 0 0 0 chr9 118152397 118152428 -5923744 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1486 1739 301 99 72 chr9 118152505 118153375 -5922797 + MTE-int LTR MaLR 608 1501 -79 2 1486 486 327 74 65 chr9 118153375 118153728 -5922444 + ORR1E LTR MaLR 4 359 0 2 1486 753 278 80 27 chr9 118153844 118154106 -5922066 - MTD LTR MaLR -4 415 140 2 1486 225 254 0 0 chr9 118154570 118154641 -5921531 + A-rich Low_complexity Low_complexity 1 71 0 2 1486 521 314 0 48 chr9 118155276 118155423 -5920749 + B4 SINE B4 2 141 -151 2 1486 242 261 0 7 chr9 118155428 118155567 -5920605 + (CA)n Simple_repeat Simple_repeat 1 138 0 2 1486 279 0 0 0 chr9 118156719 118156750 -5919422 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1486 419 152 13 0 chr9 118156930 118157009 -5919163 + GA-rich Low_complexity Low_complexity 2 81 0 2 1486 400 226 56 80 chr9 118157571 118157696 -5918476 + RSINE1 SINE B4 3 124 -41 2 1486 393 22 0 0 chr9 118157698 118157744 -5918428 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1486 228 244 0 0 chr9 118158223 118158268 -5917904 - MER5A1 DNA MER1_type -120 46 2 2 1486 531 292 14 7 chr9 118158379 118158517 -5917655 - B4A SINE B4 -15 277 139 2 1486 489 34 0 0 chr9 118158759 118158818 -5917354 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1486 337 362 25 75 chr9 118159476 118159676 -5916496 + ID_B1 SINE B4 1 190 -34 2 1486 451 286 47 94 chr9 118159852 118160022 -5916150 + RSINE1 SINE B4 4 165 0 2 1486 905 92 29 44 chr9 118160071 118160207 -5915965 + B1_Mur4 SINE Alu 4 137 -13 2 1486 549 0 0 0 chr9 118160211 118160272 -5915900 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1486 189 0 0 0 chr9 118161013 118161034 -5915138 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 1486 4097 49 2 0 chr9 118161034 118161522 -5914650 - L1Md_F2 LINE L1 -23 6559 6071 2 1486 788 299 106 31 chr9 118161671 118162123 -5914049 - L1MC2 LINE L1 -501 5843 5358 2 1486 240 355 61 94 chr9 118162164 118162441 -5913731 + LTR16C LTR ERVL 187 454 -35 2 1486 824 184 31 17 chr9 118162533 118162748 -5913424 - RMER19C LTR ERVK 0 611 466 2 1486 363 380 67 30 chr9 118162908 118163282 -5912890 + LTR81C LTR ERV1? 413 1005 -345 2 1486 630 227 59 20 chr9 118163564 118163717 -5912455 + B3A SINE B2 2 160 -38 2 1486 414 0 0 0 chr9 118163720 118163766 -5912406 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1486 676 251 155 52 chr9 118163815 118164067 -5912105 + B4A SINE B4 15 292 0 3 1486 379 257 121 58 chr9 118165593 118165719 -5910453 - Lx8 LINE L1 -2 7471 7347 3 1486 812 90 16 0 chr9 118165719 118165841 -5910331 + (TTTC)n Simple_repeat Simple_repeat 3 126 0 3 1486 379 257 121 58 chr9 118165841 118165904 -5910268 - Lx8 LINE L1 -127 7346 7272 3 1486 336 317 144 44 chr9 118166171 118166442 -5909730 + ORR1D2 LTR MaLR 3 300 -70 3 1486 445 234 7 7 chr9 118166442 118166580 -5909592 + GA-rich Low_complexity Low_complexity 1 138 0 3 1486 236 154 211 0 chr9 118166593 118166645 -5909527 + ORR1D2 LTR MaLR 316 378 -1 3 1486 1520 67 0 15 chr9 118166702 118166900 -5909272 + B2_Mm2 SINE B2 1 195 0 3 1486 1254 136 5 27 chr9 118167066 118167286 -5908886 - URR1B DNA MER1_type 0 225 11 3 1486 534 31 0 0 chr9 118167556 118167620 -5908552 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1486 621 136 0 0 chr9 118167626 118167729 -5908443 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 3 1486 351 287 67 85 chr9 118167729 118168011 -5908161 + Charlie1a DNA MER1_type 1125 1401 -54 3 1486 353 45 60 0 chr9 118168011 118168078 -5908094 + Lx4A LINE L1 6986 7056 -2 3 1486 455 283 87 0 chr9 118168125 118168263 -5907909 + RSINE1 SINE B4 5 154 -11 3 1486 763 207 0 85 chr9 118168332 118168496 -5907676 + B1_Mur4 SINE Alu 1 150 0 3 1486 381 275 88 15 chr9 118168565 118168725 -5907447 - L1M5 LINE L1 -500 5679 5509 3 1486 1341 101 24 0 chr9 118168739 118168947 -5907225 + ORR1A4 LTR MaLR 116 328 -1 3 1486 256 328 175 8 chr9 118169008 118169134 -5907038 - RSINE1 SINE B4 -17 148 2 3 1486 2009 120 30 6 chr9 118169307 118169628 -5906544 + MTC LTR MaLR 1 329 -92 3 1486 1655 149 115 0 chr9 118169628 118169950 -5906222 + ORR1B2 LTR MaLR 2 360 -7 3 1486 429 236 0 54 chr9 118169932 118169997 -5906175 + MTC LTR MaLR 316 375 -46 3 1486 191 0 0 94 chr9 118169997 118170029 -5906143 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1486 429 236 0 54 chr9 118170029 118170075 -5906097 + MTC LTR MaLR 376 421 0 3 1486 225 0 0 0 chr9 118171071 118171096 -5905076 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1486 654 249 54 43 chr9 118171489 118171674 -5904498 + B3A SINE B2 1 187 -8 3 1486 227 299 103 0 chr9 118171702 118171789 -5904383 + PB1D7 SINE Alu 11 106 -14 3 1486 263 28 28 0 chr9 118171800 118171836 -5904336 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1486 654 13 0 0 chr9 118171955 118172030 -5904142 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1486 3105 154 20 25 chr9 118172162 118172722 -5903450 - Lx LINE L1 0 6654 6098 3 1486 767 104 0 41 chr9 118172733 118172904 -5903268 + (TA)n Simple_repeat Simple_repeat 1 164 0 3 1486 575 111 100 0 chr9 118172905 118172995 -5903177 - Lx LINE L1 -539 6115 6017 3 1486 220 146 0 0 chr9 118173062 118173103 -5903069 - B4 SINE B4 -250 42 2 3 1486 218 302 0 59 chr9 118173495 118173597 -5902575 + (CCCA)n Simple_repeat Simple_repeat 3 98 0 3 1486 319 285 76 15 chr9 118173622 118173754 -5902418 - B4 SINE B4 -149 143 4 3 1486 457 303 117 33 chr9 118174015 118174288 -5901884 + Lx8 LINE L1 7137 7432 -41 3 1486 398 246 11 35 chr9 118174420 118174570 -5901602 - B3 SINE B2 -54 144 1 3 1486 230 274 0 59 chr9 118174841 118174942 -5901230 - MIR SINE MIR -66 196 102 3 1486 284 301 35 17 chr9 118174956 118175071 -5901101 - B4A SINE B4 -174 118 2 3 1486 311 169 0 14 chr9 118175774 118175846 -5900326 + GA-rich Low_complexity Low_complexity 2 72 0 3 1486 434 305 86 48 chr9 118176418 118176731 -5899441 - L1M2 LINE L1 -587 5710 5386 3 1486 1105 227 92 26 chr9 118176738 118177126 -5899046 + MT2A LTR ERVL 2 540 -61 3 1486 348 24 0 0 chr9 118177126 118177167 -5899005 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1486 611 280 90 58 chr9 118177167 118177204 -5898968 + MT2A LTR ERVL 541 594 -7 3 1486 2001 309 58 60 chr9 118177217 118177867 -5898305 - L1M2 LINE L1 -835 5308 4637 3 1486 219 36 0 0 chr9 118177867 118177895 -5898277 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1486 2001 309 58 60 chr9 118177895 118177908 -5898264 - L1M2 LINE L1 -1507 4636 4633 3 1486 754 87 165 0 chr9 118177908 118178023 -5898149 + B1_Mus2 SINE Alu 2 135 -12 3 1486 207 0 0 0 chr9 118178025 118178048 -5898124 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1486 2001 309 58 60 chr9 118178048 118178620 -5897552 - L1M2 LINE L1 -1511 4632 4072 3 1486 723 256 15 39 chr9 118179110 118179313 -5896859 - B3A SINE B2 0 198 1 3 1486 274 271 35 23 chr9 118179614 118179701 -5896471 - ID_B1 SINE B4 0 224 137 3 1486 1242 43 0 6 chr9 118179702 118179865 -5896307 + B2_Mm2 SINE B2 1 162 -33 3 1486 297 75 0 0 chr9 118179866 118179906 -5896266 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3 1486 596 266 6 25 chr9 118179906 118180064 -5896108 - ID_B1 SINE B4 -69 155 1 3 1486 227 31 31 0 chr9 118180257 118180289 -5895883 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 3 1486 817 161 12 6 chr9 118180316 118180479 -5895693 + GA-rich Low_complexity Low_complexity 1 164 0 3 1486 315 190 5 14 chr9 118181658 118181740 -5894432 + L1_Mur2 LINE L1 5576 5656 -635 3 1486 289 338 83 10 chr9 118182460 118182774 -5893398 - L1ME1 LINE L1 -5 6174 5838 3 1486 375 23 0 0 chr9 118182870 118182914 -5893258 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1486 347 294 54 34 chr9 118183255 118183403 -5892769 + ID_B1 SINE B4 72 222 -2 3 1486 926 189 11 37 chr9 118183557 118183744 -5892428 + B3A SINE B2 1 182 -16 3 1486 1552 46 0 15 chr9 118183789 118183986 -5892186 + L1_Mus2 LINE L1 6373 6566 0 3 1486 186 43 0 0 chr9 118184061 118184084 -5892088 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1486 7911 86 13 2 chr9 118184095 118185410 -5890762 - L1_Mus4 LINE L1 0 6636 5314 3 1486 8394 70 50 1 chr9 118185409 118186594 -5889578 - MusHAL1 LINE L1 -1469 1243 1 3 1486 5116 135 0 0 chr9 118186586 118187326 -5888846 - L1VL4 LINE L1 -5513 789 50 3 1486 432 0 0 0 chr9 118187459 118187507 -5888665 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1486 259 254 70 4 chr9 118187764 118187844 -5888328 - B3A SINE B2 -134 82 1 3 1486 22 0 0 0 chr9 118188433 118188455 -5887717 + AT_rich Low_complexity Low_complexity 1 22 0 3 1486 450 120 0 0 chr9 118188997 118189072 -5887100 + (TATG)n Simple_repeat Simple_repeat 4 78 0 3 1486 716 178 0 22 chr9 118189091 118189275 -5886897 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1486 1084 272 17 30 chr9 118189288 118189584 -5886588 - B4A SINE B4 0 292 1 3 1486 462 248 0 0 chr9 118190868 118191009 -5885163 + (CA)n Simple_repeat Simple_repeat 2 142 0 3 1486 716 200 0 6 chr9 118191039 118191220 -5884952 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1486 297 233 0 0 chr9 118191248 118191338 -5884834 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 1486 771 199 144 46 chr9 118191506 118191701 -5884471 - B3 SINE B2 -1 215 2 3 1486 771 215 26 107 chr9 118192267 118192501 -5883671 - B3 SINE B2 0 216 2 3 1486 2133 269 115 75 chr9 118192752 118192848 -5883324 - Lx9 LINE L1 -26 7618 7518 3 1486 462 18 0 0 chr9 118192848 118192903 -5883269 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1486 2133 269 115 75 chr9 118192903 118193072 -5883100 - Lx9 LINE L1 -127 7517 7345 3 1486 1053 150 0 0 chr9 118193072 118193252 -5882920 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1486 189 0 0 0 chr9 118193252 118193273 -5882899 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1486 2133 269 115 75 chr9 118193273 118193993 -5882179 - Lx9 LINE L1 -300 7344 6594 3 1486 285 208 152 30 chr9 118194048 118194147 -5882025 - B4 SINE B4 -69 223 113 3 1486 467 123 12 0 chr9 118194165 118194246 -5881926 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1486 303 122 0 0 chr9 118194381 118194430 -5881742 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 3 1486 228 67 0 0 chr9 118195029 118195059 -5881113 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 3 1486 270 0 0 0 chr9 118195323 118195353 -5880819 + (TAA)n Simple_repeat Simple_repeat 1 30 0 3 1486 293 260 39 13 chr9 118195526 118195604 -5880568 + ID4_ SINE ID 2 81 -2 3 1486 197 132 26 0 chr9 118195728 118195766 -5880406 + CT-rich Low_complexity Low_complexity 1 39 0 3 1486 707 243 117 17 chr9 118196115 118196354 -5879818 + Lx8 LINE L1 7207 7469 -4 3 1486 351 136 0 0 chr9 118196767 118196826 -5879346 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1486 914 239 29 17 chr9 118196903 118197141 -5879031 + 7SK RNA RNA 1 241 -90 3 1486 6958 36 0 0 chr9 118197144 118197965 -5878207 - L1Md_F2 LINE L1 -903 4980 4160 3 1486 5372 18 0 0 chr9 118197960 118198568 -5877604 + L1Md_F2 LINE L1 4978 5585 -298 3 1486 8149 42 5 7 chr9 118198569 118199567 -5876605 + L1Md_F2 LINE L1 5587 6582 0 3 1486 297 75 0 0 chr9 118199640 118199680 -5876492 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1486 435 218 69 10 chr9 118199688 118199790 -5876382 - B3 SINE B2 -103 113 6 3 1486 607 232 296 27 chr9 118199892 118200115 -5876057 - MTEb LTR MaLR -96 283 1 3 1486 924 307 90 37 chr9 118200309 118201024 -5875148 + L1M2 LINE L1 4792 5567 -724 3 1486 2754 54 81 0 chr9 118201024 118201394 -5874778 - MTB LTR MaLR 0 400 1 3 1486 527 308 113 48 chr9 118201394 118201502 -5874670 + L1M2 LINE L1 5568 5658 -633 3 1486 368 291 19 0 chr9 118201502 118201605 -5874567 - PB1D9 SINE Alu -13 107 3 3 1486 438 172 43 0 chr9 118201774 118201890 -5874282 + (CATA)n Simple_repeat Simple_repeat 2 122 0 3 1486 202 240 0 20 chr9 118201915 118201966 -5874206 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 3 1486 1186 242 15 4 chr9 118202011 118202272 -5873900 - L1MDa LINE L1 -2227 6046 5783 3 1486 485 197 92 23 chr9 118202511 118202641 -5873531 + B1_Mur2 SINE Alu 11 149 0 3 1486 271 333 81 0 chr9 118203568 118203691 -5872481 + MER117 DNA MER1_type 35 167 -30 3 1486 291 313 34 7 chr9 118204273 118204421 -5871751 - L1MD LINE L1 -1040 5106 4955 3 1486 261 254 17 0 chr9 118204434 118204493 -5871679 + CT-rich Low_complexity Low_complexity 3 62 0 3 1486 617 200 22 22 chr9 118204892 118205018 -5871154 + B1_Mur1 SINE Alu 12 139 -10 3 1486 261 0 0 0 chr9 118205018 118205047 -5871125 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1486 617 200 22 22 chr9 118205047 118205058 -5871114 + B1_Mur1 SINE Alu 140 149 0 3 1486 710 296 127 24 chr9 118205073 118205492 -5870680 - L1MD LINE L1 -1534 4612 4151 3 1486 1130 54 0 39 chr9 118205496 118205511 -5870661 - B1_Mus2 SINE Alu 0 147 135 3 1486 522 0 0 0 chr9 118205511 118205569 -5870603 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 3 1486 1130 54 0 39 chr9 118205569 118205706 -5870466 - B1_Mus2 SINE Alu -13 134 1 3 1486 230 211 0 0 chr9 118205711 118205768 -5870404 - L1MD LINE L1 -1957 4189 4133 3 1486 348 327 64 25 chr9 118205859 118206063 -5870109 - L1MDa LINE L1 -2155 4382 4171 3 1486 290 283 54 11 chr9 118206417 118206510 -5869662 - L1MDa LINE L1 -6400 233 137 3 1486 423 205 104 26 chr9 118206830 118206945 -5869227 + B1F SINE Alu 18 141 -8 3 1486 21 0 0 0 chr9 118207663 118207684 -5868488 + AT_rich Low_complexity Low_complexity 1 21 0 3 1486 250 235 11 96 chr9 118207746 118207840 -5868332 + B4A SINE B4 7 92 -200 3 1486 276 218 85 0 chr9 118207907 118208000 -5868172 + RSINE1 SINE B4 78 156 -9 3 1486 1269 93 0 0 chr9 118208027 118208286 -5867886 + (CA)n Simple_repeat Simple_repeat 1 259 0 4 1486 354 262 0 24 chr9 118208490 118208572 -5867600 + ID4_ SINE ID 2 81 -2 4 1486 339 293 75 54 chr9 118209258 118209439 -5866733 - B4 SINE B4 -1 291 82 4 1486 438 192 19 5 chr9 118209513 118209616 -5866556 - PB1D10 SINE Alu 0 117 16 4 1486 260 316 8 17 chr9 118209647 118209766 -5866406 + BC1_Mm scRNA scRNA 1 118 -34 4 1486 1204 127 32 0 chr9 118210650 118210839 -5865333 + B2_Mm2 SINE B2 1 195 0 4 1486 206 174 22 0 chr9 118210881 118210927 -5865245 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1486 2551 35 0 0 chr9 118212610 118212900 -5863272 - L1Md_F2 LINE L1 -125 6457 6168 4 1486 860 89 0 0 chr9 118212900 118213023 -5863149 + L1Md_F2 LINE L1 6448 6570 -12 4 1486 382 120 13 13 chr9 118213289 118213365 -5862807 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1486 1201 145 120 0 chr9 118213492 118213692 -5862480 - URR1A DNA MER1_type -2 224 1 4 1486 236 262 16 0 chr9 118214645 118214706 -5861466 - PB1 SINE Alu -65 62 1 4 1486 224 279 12 25 chr9 118214706 118214721 -5861451 - B4 SINE B4 -141 146 72 4 1486 430 184 30 61 chr9 118214848 118215045 -5861127 - RMER17C LTR ERVK -137 273 83 4 1486 7552 91 11 0 chr9 118215833 118217047 -5859125 - L1_Mus3 LINE L1 -550 6034 4788 4 1486 5119 66 5 10 chr9 118217047 118217718 -5858454 + L1_Mus3 LINE L1 5971 6637 -1 4 1486 429 109 0 0 chr9 118218481 118218545 -5857627 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1486 1025 232 89 0 chr9 118218545 118218791 -5857381 - B4 SINE B4 -23 269 2 4 1486 239 341 45 48 chr9 118219058 118219326 -5856846 - HAL1 LINE L1 -689 1818 1552 4 1486 326 364 0 26 chr9 118219331 118219444 -5856728 + PB1D10 SINE Alu 1 110 -7 4 1486 384 331 45 28 chr9 118219868 118220045 -5856127 - MLT1A0 LTR MaLR -64 301 122 4 1486 1004 81 18 42 chr9 118221036 118221169 -5855003 + B2_Mm2 SINE B2 23 154 -41 4 1486 414 0 0 0 chr9 118221169 118221215 -5854957 + (CATA)n Simple_repeat Simple_repeat 2 47 0 4 1486 1004 81 18 42 chr9 118221215 118221249 -5854923 + B2_Mm2 SINE B2 155 186 -9 4 1486 1411 80 16 0 chr9 118221405 118221593 -5854579 + B2_Mm1t SINE B2 1 191 -2 4 1486 328 197 14 14 chr9 118221703 118221775 -5854397 - HAL1-3A_ME LINE L1 -812 2046 1975 4 1486 684 170 20 11 chr9 118221775 118222127 -5854045 + (TG)n Simple_repeat Simple_repeat 1 355 0 4 1486 436 395 60 36 chr9 118222153 118222434 -5853738 - B4A SINE B4 -2 290 3 4 1486 2031 89 82 7 chr9 118222878 118223184 -5852988 - ORR1A4 LTR MaLR 0 329 1 4 1486 1255 134 38 33 chr9 118223184 118223481 -5852691 - ORR1A4-int LTR MaLR 0 1963 1755 4 1486 193 208 14 14 chr9 118223663 118223736 -5852436 + GA-rich Low_complexity Low_complexity 2 74 0 4 1486 569 94 18 28 chr9 118223739 118223848 -5852324 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 4 1486 571 347 110 22 chr9 118223848 118224166 -5852006 - MLT2B3 LTR ERVL -55 499 154 4 1486 477 0 0 0 chr9 118224175 118224228 -5851944 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1486 360 0 0 0 chr9 118224228 118224267 -5851905 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1486 222 286 13 13 chr9 118224299 118224377 -5851795 + CT-rich Low_complexity Low_complexity 1 78 0 4 1486 826 102 48 0 chr9 118224722 118224889 -5851283 + (TC)n Simple_repeat Simple_repeat 1 175 0 4 1486 455 245 6 0 chr9 118224888 118225051 -5851121 + (CA)n Simple_repeat Simple_repeat 1 164 0 4 1486 578 303 93 12 chr9 118226032 118226289 -5849883 - L1MA8 LINE L1 -362 5929 5652 4 1486 249 292 65 24 chr9 118226335 118226458 -5849714 - MER5A1 DNA MER1_type -4 162 35 4 1486 446 301 79 16 chr9 118226517 118226706 -5849466 + L1MA8 LINE L1 5729 5929 -362 4 185 715 232 104 6 chr9 118226888 118227061 -5849111 - ID_B1 SINE B4 -27 197 8 4 1487 180 316 103 54 chr9 118228995 118229199 -5846973 + L2a LINE L2 3210 3423 -3 4 1487 3047 64 23 10 chr9 118229464 118229859 -5846313 - MTB LTR MaLR 0 400 1 4 1487 375 23 0 0 chr9 118230392 118230436 -5845736 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1487 887 269 9 9 chr9 118231166 118231380 -5844792 + ID_B1 SINE B4 9 222 -2 4 1487 444 189 0 6 chr9 118231480 118231570 -5844602 + B1F SINE Alu 32 119 -1 4 1487 614 170 57 0 chr9 118231792 118231898 -5844274 + B1_Mur3 SINE Alu 1 112 -37 4 1487 982 75 27 0 chr9 118231903 118232050 -5844122 + (TAGA)n Simple_repeat Simple_repeat 4 154 0 4 1487 1411 171 358 2 chr9 118232305 118232617 -5843555 + Lx9 LINE L1 7060 7481 -163 4 1487 180 111 0 0 chr9 118232617 118232644 -5843528 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1487 1411 171 358 2 chr9 118232644 118232758 -5843414 + Lx9 LINE L1 7482 7638 -6 4 1487 1364 250 74 37 chr9 118233813 118234216 -5841956 - MTD LTR MaLR 0 419 2 4 1487 203 0 37 0 chr9 118234266 118234293 -5841879 + (TATAA)n Simple_repeat Simple_repeat 2 29 0 4 1487 28 0 0 0 chr9 118234336 118234364 -5841808 + AT_rich Low_complexity Low_complexity 1 28 0 4 1487 432 0 0 0 chr9 118234587 118234635 -5841537 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1487 984 279 25 11 chr9 118234644 118234919 -5841253 - B4 SINE B4 -12 280 2 4 1487 900 144 0 14 chr9 118234963 118235104 -5841068 + B1_Mus1 SINE Alu 10 148 0 4 1487 256 311 77 94 chr9 118235253 118235434 -5840738 + MER97c DNA MER1_type? 845 1022 -68 4 1487 860 320 61 44 chr9 118236276 118236639 -5839533 - MLT1B LTR MaLR -8 382 14 4 1487 857 162 0 7 chr9 118238102 118238239 -5837933 + B1_Mur2 SINE Alu 1 136 -13 4 1487 213 39 0 0 chr9 118238243 118238269 -5837903 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1487 442 314 25 66 chr9 118238355 118238550 -5837622 + B3 SINE B2 9 195 -21 4 1487 1115 199 63 52 chr9 118238550 118238919 -5837253 - MTD LTR MaLR 0 419 3 4 1487 180 97 0 0 chr9 118238960 118238991 -5837181 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 1487 735 201 0 0 chr9 118239479 118239633 -5836539 + GA-rich Low_complexity Low_complexity 3 156 0 4 1487 781 171 14 0 chr9 118240799 118240939 -5835233 + B1_Mus1 SINE Alu 1 142 -6 4 1487 485 273 55 55 chr9 118240983 118241146 -5835026 + B3A SINE B2 2 164 -34 4 1487 735 80 0 0 chr9 118241149 118241261 -5834911 + (CA)n Simple_repeat Simple_repeat 1 112 0 4 1487 369 0 0 0 chr9 118241266 118241307 -5834865 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 4 1487 376 277 74 43 chr9 118241637 118241799 -5834373 + L1M4 LINE L1 3486 3652 -2494 4 1487 552 277 84 0 chr9 118242008 118242174 -5833998 + B3A SINE B2 1 180 -18 4 1487 595 75 13 2 chr9 118242347 118242433 -5833739 + IAPLTR3 LTR ERVK 1 114 -271 4 1487 2642 6 3 16 chr9 118242404 118242722 -5833450 - IAPLTR3 LTR ERVK -12 314 1 4 1487 415 246 33 50 chr9 118242906 118243026 -5833146 + RSINE1 SINE B4 42 159 -6 4 1487 492 100 0 0 chr9 118243227 118243307 -5832865 + (CAGAGA)n Simple_repeat Simple_repeat 6 85 0 4 1487 210 37 0 0 chr9 118243778 118243805 -5832367 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 4 1487 956 152 0 0 chr9 118243805 118243943 -5832229 - B1_Mus2 SINE Alu -9 138 1 4 1487 295 131 14 113 chr9 118244839 118244936 -5831236 + B1F1 SINE Alu 24 141 -8 4 1487 238 395 33 39 chr9 118244928 118245081 -5831091 + B4 SINE B4 66 217 -75 4 1487 669 285 14 0 chr9 118245981 118246188 -5829984 - ID_B1 SINE B4 -13 211 2 4 1487 864 248 24 14 chr9 118246242 118246455 -5829717 - B3 SINE B2 0 216 2 4 1487 224 257 29 0 chr9 118246917 118246987 -5829185 + GA-rich Low_complexity Low_complexity 5 76 0 4 1487 210 333 0 14 chr9 118248494 118248567 -5827605 + GA-rich Low_complexity Low_complexity 4 75 0 4 1487 1003 212 19 19 chr9 118249169 118249385 -5826787 - B3 SINE B2 0 216 1 4 1487 1214 75 6 0 chr9 118249413 118249572 -5826600 + B2_Mm2 SINE B2 1 160 -35 4 1487 625 161 107 0 chr9 118249599 118249711 -5826461 + B1_Mus1 SINE Alu 6 129 -19 4 1487 336 48 0 0 chr9 118249712 118249754 -5826418 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 4 1487 214 184 0 0 chr9 118249755 118249793 -5826379 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 4 1487 782 274 21 81 chr9 118250159 118250393 -5825779 + ID_B1 SINE B4 1 220 -4 4 1487 590 270 60 44 chr9 118251492 118251674 -5824498 + B3A SINE B2 5 189 -9 4 1487 946 280 17 17 chr9 118252233 118252473 -5823699 + B4 SINE B4 15 254 -38 4 1487 612 101 0 0 chr9 118252481 118252570 -5823602 + (CA)n Simple_repeat Simple_repeat 1 89 0 4 1487 210 37 0 0 chr9 118253004 118253031 -5823141 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1487 186 324 44 0 chr9 118253751 118253819 -5822353 + MER5B DNA MER1_type 102 172 -6 4 1487 256 200 0 20 chr9 118253842 118253893 -5822279 + MER81 DNA AcHobo 10 59 -55 4 1487 994 273 45 42 chr9 118253920 118254207 -5821965 + B4 SINE B4 3 290 -2 4 1487 262 261 0 0 chr9 118254231 118254296 -5821876 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1487 34 0 0 0 chr9 118254394 118254428 -5821744 + AT_rich Low_complexity Low_complexity 1 34 0 4 1487 210 91 0 0 chr9 118255035 118255068 -5821104 + (TCTCCC)n Simple_repeat Simple_repeat 2 34 0 4 1487 582 275 155 35 chr9 118255347 118255573 -5820599 - MTD LTR MaLR -149 270 18 4 1487 1248 214 78 151 chr9 118256707 118256853 -5819319 + ORR1D2 LTR MaLR 3 157 -213 4 1487 507 33 0 0 chr9 118256853 118256914 -5819258 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 4 1487 1248 214 78 151 chr9 118256914 118257095 -5819077 + ORR1D2 LTR MaLR 158 304 -66 4 1487 343 20 39 19 chr9 118257095 118257147 -5819025 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 4 1487 1248 214 78 151 chr9 118257147 118257215 -5818957 + ORR1D2 LTR MaLR 305 370 0 4 1487 1089 241 119 48 chr9 118257215 118257378 -5818794 + MTD LTR MaLR 44 213 -206 4 1487 1087 39 0 0 chr9 118257378 118257506 -5818666 + B1_Mus1 SINE Alu 2 129 -19 5 1487 1089 241 119 48 chr9 118257506 118257693 -5818479 + MTD LTR MaLR 214 419 0 4 1487 272 296 33 22 chr9 118257752 118257842 -5818330 + MIRb SINE MIR 60 150 -118 5 1487 2601 187 81 35 chr9 118257845 118258068 -5818104 + Lx7 LINE L1 6912 7160 -536 5 1487 198 0 0 0 chr9 118258068 118258090 -5818082 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 5 1487 2601 187 81 35 chr9 118258090 118258458 -5817714 + Lx7 LINE L1 7161 7529 -167 5 1487 2991 180 25 52 chr9 118258470 118258949 -5817223 + RLTR20B3 LTR ERVK 1 473 -104 5 1487 387 0 0 0 chr9 118258949 118258992 -5817180 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1487 2991 180 25 52 chr9 118258992 118259105 -5817067 + RLTR20B3 LTR ERVK 474 577 0 5 1487 281 162 0 56 chr9 118259106 118259178 -5816994 + Lx7 LINE L1 7558 7625 -71 5 1487 420 157 0 0 chr9 118259179 118259249 -5816923 - B3A SINE B2 -127 71 2 5 1487 279 165 43 76 chr9 118259383 118259475 -5816697 + Lx6 LINE L1 7372 7460 0 5 1487 387 296 64 84 chr9 118259593 118259661 -5816511 - B3A SINE B2 -2 214 151 5 1487 468 0 0 0 chr9 118259661 118259713 -5816459 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1487 387 325 54 12 chr9 118259713 118259847 -5816325 - B3A SINE B2 -44 154 17 5 1487 622 234 36 7 chr9 118260131 118260269 -5815903 + B3A SINE B2 2 143 -55 5 1487 315 65 0 0 chr9 118260271 118260317 -5815855 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 5 1487 22 0 0 0 chr9 118260323 118260345 -5815827 + AT_rich Low_complexity Low_complexity 1 22 0 5 1487 547 310 60 10 chr9 118260436 118260635 -5815537 - LTR16C LTR ERVL -10 479 271 5 1487 457 284 22 7 chr9 118260781 118260916 -5815256 - MLT1F2 LTR MaLR -413 147 11 5 1487 337 139 81 27 chr9 118261878 118261952 -5814220 + ID_B1 SINE B4 70 147 -77 5 1487 245 0 0 160 chr9 118261952 118262077 -5814095 + (CAGAG)n Simple_repeat Simple_repeat 1 105 0 5 1487 258 172 136 39 chr9 118262078 118262181 -5813991 + RLTR25B LTR ERVK 397 509 -519 5 1487 413 100 325 0 chr9 118262122 118262202 -5813970 + B1_Mm SINE Alu 42 147 0 5 1487 279 0 0 0 chr9 118262371 118262402 -5813770 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1487 375 23 0 0 chr9 118262402 118262445 -5813727 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1487 288 264 30 81 chr9 118262445 118262544 -5813628 - B3A SINE B2 -104 94 1 5 1487 1258 47 0 0 chr9 118262783 118262931 -5813241 + B1_Mus1 SINE Alu 1 148 0 5 1487 206 287 103 0 chr9 118263029 118263116 -5813056 + MIRb SINE MIR 45 140 -128 5 1487 186 71 0 0 chr9 118263194 118263222 -5812950 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 1487 341 285 40 58 chr9 118263366 118263527 -5812645 + B4 SINE B4 1 159 -6 5 1487 759 200 17 73 chr9 118263661 118263839 -5812333 - B3A SINE B2 -48 168 1 5 1487 970 107 57 0 chr9 118263876 118264016 -5812156 + B1_Mur4 SINE Alu 3 150 0 5 1487 215 216 0 0 chr9 118264030 118264067 -5812105 + (CCA)n Simple_repeat Simple_repeat 2 38 0 5 1487 196 275 0 0 chr9 118264554 118264594 -5811578 - MER5A DNA MER1_type 0 189 150 5 1487 340 330 59 40 chr9 118264603 118264805 -5811367 + MTE2b LTR MaLR 13 218 -161 5 1487 1624 192 129 90 chr9 118264931 118265411 -5810761 + RLTR11A LTR ERVK 1 499 -29 5 1487 1352 52 0 171 chr9 118265416 118265650 -5810522 - B2_Mm2 SINE B2 -1 194 1 5 1487 402 368 53 22 chr9 118265672 118265897 -5810275 + MT2A LTR ERVL 302 533 0 5 1487 199 289 0 0 chr9 118266026 118266071 -5810101 - MER5A DNA MER1_type -133 56 12 5 1487 3865 28 5 0 chr9 118266196 118266630 -5809542 - RLTR10C LTR ERVK 0 436 1 5 1487 228 213 21 0 chr9 118266897 118266944 -5809228 + MTD LTR MaLR 46 93 -326 5 1487 247 345 0 72 chr9 118267338 118267463 -5808709 - Zaphod2 DNA Tip100 -2282 1242 1127 5 1487 522 256 24 8 chr9 118267498 118267624 -5808548 + B1F SINE Alu 12 139 -10 5 1487 576 210 8 25 chr9 118267813 118267935 -5808237 - PB1D9 SINE Alu 0 120 1 5 1487 387 309 47 87 chr9 118268054 118268104 -5808068 - Zaphod2 DNA Tip100 -2670 854 809 5 1487 1428 65 5 26 chr9 118268104 118268294 -5807878 - B2_Mm2 SINE B2 -8 187 2 5 1487 387 309 47 87 chr9 118268294 118268519 -5807653 - Zaphod2 DNA Tip100 -2716 808 590 5 1487 483 196 41 0 chr9 118269035 118269132 -5807040 + PB1D9 SINE Alu 14 114 -6 5 1487 233 208 0 19 chr9 118269084 118269138 -5807034 + ID_B1 SINE B4 172 224 0 5 1487 392 257 145 34 chr9 118269599 118269716 -5806456 - ID_B1 SINE B4 -9 215 86 5 1487 560 235 88 78 chr9 118271178 118271271 -5804901 - ID_B1 SINE B4 -3 221 137 5 1487 778 167 183 86 chr9 118271271 118271468 -5804704 - B3 SINE B2 0 216 1 5 1487 560 235 88 78 chr9 118271468 118271591 -5804581 - ID_B1 SINE B4 -88 136 4 5 1487 301 267 10 29 chr9 118271729 118271833 -5804339 + (TA)n Simple_repeat Simple_repeat 1 102 0 5 1487 196 323 32 16 chr9 118271968 118272031 -5804141 - L3 LINE CR1 -135 4354 4291 5 1487 564 300 169 8 chr9 118272034 118272276 -5803896 + B4A SINE B4 12 292 0 5 1487 351 65 0 0 chr9 118272285 118272331 -5803841 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1487 361 252 43 31 chr9 118272373 118272501 -5803671 + MIRm SINE MIR 25 169 -107 5 1487 675 149 0 0 chr9 118272771 118272892 -5803280 + (GGA)n Simple_repeat Simple_repeat 2 122 0 5 1487 755 134 119 0 chr9 118272951 118273085 -5803087 - B1_Mur4 SINE Alu 0 150 1 5 1487 512 287 38 6 chr9 118273173 118273331 -5802841 + RSINE1 SINE B4 3 165 0 5 1487 306 50 0 0 chr9 118273448 118273488 -5802684 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 1487 754 188 0 83 chr9 118273488 118273634 -5802538 - B1_Mur3 SINE Alu -12 137 5 5 1487 748 225 121 0 chr9 118273922 118274104 -5802068 + B3 SINE B2 1 204 -12 5 1487 199 384 86 5 chr9 118274140 118274326 -5801846 - MIRb SINE MIR -36 232 32 5 1487 225 108 0 0 chr9 118275166 118275203 -5800969 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 5 1487 261 57 0 0 chr9 118275207 118275242 -5800930 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5 1487 639 239 20 27 chr9 118275330 118275488 -5800684 - ID_B1 SINE B4 -63 229 73 5 1487 751 202 0 0 chr9 118275552 118275681 -5800491 + B1_Mur1 SINE Alu 21 149 0 5 1487 331 285 116 46 chr9 118275686 118275859 -5800313 + L1M5 LINE L1 4463 4647 -1499 5 1487 820 297 55 14 chr9 118275907 118276272 -5799900 + L1MA8 LINE L1 4977 5356 -787 5 1487 1477 74 0 10 chr9 118276273 118276465 -5799707 + B2_Mm2 SINE B2 1 190 -5 5 1487 211 214 14 14 chr9 118276478 118276549 -5799623 + GA-rich Low_complexity Low_complexity 3 73 0 5 1487 1349 276 95 20 chr9 118276566 118277124 -5799048 + L1MA8 LINE L1 5361 5960 -331 5 1487 1656 42 0 0 chr9 118277143 118277336 -5798836 - B2_Mm1t SINE B2 0 193 1 5 1487 1457 138 0 5 chr9 118277338 118277556 -5798616 - URR1A DNA MER1_type -7 219 3 5 1487 438 299 62 28 chr9 118277558 118277737 -5798435 + L1MA8 LINE L1 5949 6133 -158 5 1487 342 256 13 0 chr9 118277742 118277820 -5798352 + B3A SINE B2 7 85 -113 5 1487 1160 68 0 13 chr9 118277892 118278042 -5798130 + B1_Mus1 SINE Alu 1 148 0 5 1487 619 198 83 0 chr9 118278057 118278178 -5797994 + B1_Mur2 SINE Alu 4 134 -15 5 1487 330 272 88 12 chr9 118278242 118278402 -5797770 + L1MA8 LINE L1 6115 6286 -5 5 1487 759 230 35 59 chr9 118278430 118278633 -5797539 + B3A SINE B2 1 198 0 5 1487 854 273 15 5 chr9 118278886 118279092 -5797080 + B3 SINE B2 4 211 -5 5 1487 627 301 43 10 chr9 118279104 118279312 -5796860 + ID_B1 SINE B4 10 224 0 5 1487 582 225 0 8 chr9 118280434 118280555 -5795617 + L1_Rod LINE L1 5098 5217 -630 5 1487 503 200 217 34 chr9 118280679 118280886 -5795286 + Lx8 LINE L1 7200 7444 -29 5 1487 962 219 60 0 chr9 118280925 118281126 -5795046 + B3 SINE B2 1 213 -3 5 1487 264 59 0 0 chr9 118281256 118281290 -5794882 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1487 468 191 0 0 chr9 118281344 118281438 -5794734 + (TA)n Simple_repeat Simple_repeat 1 94 0 5 1487 309 308 109 40 chr9 118281440 118281714 -5794458 + L1_Rod LINE L1 5336 5654 -226 5 1487 303 207 40 25 chr9 118281868 118281956 -5794216 + L1_Mur3 LINE L1 5331 5447 -731 5 1487 523 270 72 0 chr9 118282227 118282379 -5793793 - MTEb LTR MaLR 0 379 217 5 1487 209 98 24 0 chr9 118282727 118282768 -5793404 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 5 1487 259 320 0 0 chr9 118282832 118282910 -5793262 - ID4_ SINE ID -2 81 4 5 1487 434 315 0 30 chr9 118282959 118283093 -5793079 - ID_B1 SINE B4 -4 220 91 5 1487 327 279 40 53 chr9 118284137 118284261 -5791911 + MIRc SINE MIR 36 161 -107 5 1487 372 72 0 67 chr9 118284317 118284377 -5791795 + B1_Mur4 SINE Alu 95 150 0 5 1487 330 26 0 0 chr9 118284570 118284609 -5791563 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1487 601 287 22 39 chr9 118284612 118284793 -5791379 - B4 SINE B4 -1 291 114 5 1487 392 303 64 0 chr9 118284827 118284936 -5791236 - B4A SINE B4 -176 116 1 5 1487 232 227 45 15 chr9 118284965 118285032 -5791140 - Kanga1a DNA Tc2 -664 90 22 5 1487 299 330 101 0 chr9 118285190 118285299 -5790873 - RSINE1 SINE B4 -28 137 18 5 1487 453 206 0 0 chr9 118285302 118285404 -5790768 + CT-rich Low_complexity Low_complexity 1 102 0 5 1487 848 133 37 6 chr9 118286335 118286851 -5789321 + (TGGA)n Simple_repeat Simple_repeat 1 532 0 5 1487 705 261 32 162 chr9 118287288 118287514 -5788658 + MLT2C1 LTR ERVL 30 215 -182 5 1487 1377 63 0 17 chr9 118287514 118287693 -5788479 - B2_Mm2 SINE B2 -17 178 3 5 1487 705 295 48 147 chr9 118287693 118287878 -5788294 + MLT2C1 LTR ERVL 216 412 -52 5 1487 294 205 0 0 chr9 118287932 118288010 -5788162 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1487 828 116 38 17 chr9 118288987 118289225 -5786947 + (TATG)n Simple_repeat Simple_repeat 1 243 0 5 1487 1082 306 118 53 chr9 118289256 118289918 -5786254 - Lx9 LINE L1 -127 7517 6813 5 1487 416 235 0 12 chr9 118289939 118290021 -5786151 + B1_Mur3 SINE Alu 2 82 -67 5 1487 377 340 120 10 chr9 118290055 118290438 -5785734 - L1MB5 LINE L1 -54 6120 5696 5 1487 393 22 0 0 chr9 118290646 118290692 -5785480 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1487 358 256 57 80 chr9 118290800 118291012 -5785160 - L1MB5 LINE L1 -652 5526 5320 5 1487 380 272 53 12 chr9 118291124 118291295 -5784877 - L1MB5 LINE L1 -2715 3431 3254 5 1487 1277 152 22 27 chr9 118291432 118291655 -5784517 - URR1B DNA MER1_type -3 222 1 5 1487 361 321 53 19 chr9 118291697 118291876 -5784296 - B3 SINE B2 -3 192 5 6 1487 372 133 0 0 chr9 118291907 118291956 -5784216 + B1_Mus2 SINE Alu 67 115 -32 6 1487 357 43 0 0 chr9 118291956 118292003 -5784169 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1487 659 182 47 40 chr9 118292280 118292429 -5783743 + B1_Mur4 SINE Alu 1 150 0 6 1487 215 160 13 39 chr9 118292562 118292640 -5783532 + CT-rich Low_complexity Low_complexity 4 79 0 6 1487 367 250 190 0 chr9 118292692 118292792 -5783380 - ID_B1 SINE B4 -101 123 5 6 1487 412 291 22 15 chr9 118293249 118293385 -5782787 + L1MA4 LINE L1 5790 5926 -374 6 1487 207 100 0 0 chr9 118293477 118293507 -5782665 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1487 209 303 0 29 chr9 118293510 118293578 -5782594 + GA-rich Low_complexity Low_complexity 6 71 0 6 1487 195 298 139 39 chr9 118293749 118293878 -5782294 + MIRb SINE MIR 114 255 -13 6 1487 526 203 124 25 chr9 118294623 118294744 -5781428 + B1_Mur2 SINE Alu 5 137 -12 6 1487 239 254 55 82 chr9 118294754 118294827 -5781345 + MER5B DNA MER1_type 54 124 -54 6 1487 495 69 0 0 chr9 118295267 118295339 -5780833 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1487 577 293 45 0 chr9 118295339 118295375 -5780797 - RSINE1 SINE B4 0 165 123 6 1487 812 39 0 9 chr9 118295375 118295480 -5780692 + (GAA)n Simple_repeat Simple_repeat 3 106 0 6 1487 577 293 45 0 chr9 118295480 118295600 -5780572 - RSINE1 SINE B4 -43 122 3 6 1487 450 199 31 93 chr9 118295647 118295841 -5780331 - Lx9 LINE L1 -5 7639 7458 6 1487 722 245 19 19 chr9 118295869 118295911 -5780261 - Lx9 LINE L1 -127 7517 7476 6 1487 213 39 0 0 chr9 118295911 118295937 -5780235 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1487 722 245 19 19 chr9 118295937 118296110 -5780062 - Lx9 LINE L1 -169 7475 7302 6 1487 186 292 54 122 chr9 118296164 118296238 -5779934 - MER5A DNA MER1_type -86 103 35 6 1487 1561 62 0 15 chr9 118296326 118296522 -5779650 - B2_Mm1a SINE B2 0 193 1 6 1487 208 345 48 96 chr9 118296542 118296667 -5779505 - L2a LINE L2 -2 3424 3306 6 1487 324 260 114 128 chr9 118296902 118297193 -5778979 - MTEb LTR MaLR -5 369 23 6 1487 198 342 113 103 chr9 118297260 118297548 -5778624 - L2a LINE L2 -459 2960 2663 6 1487 423 0 0 0 chr9 118297548 118297595 -5778577 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1487 198 342 113 103 chr9 118297595 118297611 -5778561 - L2 LINE L2 -757 2662 2662 6 1487 796 99 238 34 chr9 118297611 118297758 -5778414 - B2_Mm2 SINE B2 -17 178 2 6 1487 198 342 113 103 chr9 118297758 118297850 -5778322 - L2a LINE L2 -757 2662 2559 6 1487 234 286 31 16 chr9 118298026 118298090 -5778082 - tRNA-Ala-GCY_ tRNA tRNA -8 67 3 6 1487 318 26 0 0 chr9 118298381 118298420 -5777752 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 6 1487 183 42 0 0 chr9 118299678 118299702 -5776470 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 6 1487 399 223 105 11 chr9 118299709 118299804 -5776368 - PB1D7 SINE Alu -15 105 2 6 1487 2139 152 43 26 chr9 118300286 118300677 -5775495 - RMER10B LTR ERVL 0 398 1 6 1487 1177 68 0 7 chr9 118300740 118300888 -5775284 + B1_Mus2 SINE Alu 1 147 0 6 1487 336 297 28 42 chr9 118300971 118301115 -5775057 + RSINE1 SINE B4 3 144 -21 6 1487 279 54 0 0 chr9 118301141 118301178 -5774994 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1487 285 29 0 0 chr9 118301278 118301312 -5774860 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1487 286 307 128 45 chr9 118301456 118301477 -5774695 - ID_B1 SINE B4 0 224 207 6 1487 1115 202 34 5 chr9 118301477 118301686 -5774486 - B3 SINE B2 -1 215 1 6 1487 286 307 128 45 chr9 118301686 118301797 -5774375 - ID_B1 SINE B4 -18 206 81 6 1487 228 128 0 25 chr9 118302596 118302636 -5773536 + L1MC LINE L1 5722 5760 -2122 6 1487 1747 240 16 38 chr9 118302753 118303177 -5772995 + MTD LTR MaLR 5 419 0 6 1487 450 65 43 21 chr9 118303236 118303330 -5772842 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1487 252 333 13 0 chr9 118303612 118303690 -5772482 - Kanga1c DNA Tc2 -621 108 30 6 1487 642 139 37 0 chr9 118303827 118303935 -5772237 - B1_Mur4 SINE Alu 0 150 39 6 1487 255 140 0 0 chr9 118304470 118304520 -5771652 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1487 438 209 0 44 chr9 118304813 118304903 -5771269 + RSINE1 SINE B4 39 124 -41 6 1487 252 0 0 0 chr9 118304904 118304932 -5771240 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1487 345 24 0 0 chr9 118304932 118304973 -5771199 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1487 204 40 0 0 chr9 118305323 118305348 -5770824 + (C)n Simple_repeat Simple_repeat 1 25 0 6 1487 368 247 62 2 chr9 118306111 118306234 -5769938 - B4 SINE B4 -66 226 83 6 1487 334 257 60 95 chr9 118306260 118306276 -5769896 - B4 SINE B4 -180 112 98 6 1487 432 274 74 0 chr9 118306276 118306411 -5769761 - RSINE1 SINE B4 -18 147 3 6 1487 334 257 60 95 chr9 118306411 118306510 -5769662 - B4 SINE B4 -195 97 1 6 1487 383 0 0 21 chr9 118306577 118306625 -5769547 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1487 234 0 0 0 chr9 118306625 118306651 -5769521 + (TAA)n Simple_repeat Simple_repeat 1 26 0 6 1487 267 31 0 0 chr9 118307459 118307491 -5768681 + (TCCG)n Simple_repeat Simple_repeat 1 32 0 6 1487 466 87 0 42 chr9 118307880 118307976 -5768196 + (CAGAGA)n Simple_repeat Simple_repeat 2 93 0 6 1487 326 301 14 36 chr9 118308102 118308240 -5767932 + BC1_Mm scRNA scRNA 3 137 -15 6 1487 247 236 0 0 chr9 118308427 118308482 -5767690 + G-rich Low_complexity Low_complexity 1 55 0 6 1487 294 200 18 0 chr9 118308879 118308934 -5767238 - ID2 SINE ID -8 75 20 6 1487 432 0 0 0 chr9 118309055 118309103 -5767069 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1487 709 236 132 81 chr9 118309114 118309138 -5767034 - B4 SINE B4 -44 248 225 6 1487 321 26 0 0 chr9 118309138 118309176 -5766996 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 6 1487 709 236 132 81 chr9 118309176 118309386 -5766786 - B4 SINE B4 -68 224 4 6 1487 194 198 11 44 chr9 118310733 118310823 -5765349 + (CATA)n Simple_repeat Simple_repeat 1 87 0 6 1487 290 324 20 20 chr9 118310834 118310982 -5765190 + (CA)n Simple_repeat Simple_repeat 1 148 0 6 1487 280 133 16 16 chr9 118311016 118311077 -5765095 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 6 1487 859 166 0 21 chr9 118311086 118311228 -5764944 - B1_Mus1 SINE Alu 0 148 10 6 1487 310 250 19 111 chr9 118311131 118311239 -5764933 - MT2B LTR ERVL -344 257 160 6 1487 259 282 37 37 chr9 118311324 118311405 -5764767 + MER34A LTR ERV1 481 561 -10 6 1487 1120 249 42 102 chr9 118312570 118312954 -5763218 + MTE2a LTR MaLR 9 369 -10 6 1487 687 278 71 61 chr9 118313222 118313502 -5762670 + MTEa LTR MaLR 88 370 -9 6 1487 369 198 139 0 chr9 118313519 118313620 -5762552 + ID_B1 SINE B4 108 222 -2 6 1487 782 57 8 16 chr9 118313714 118313838 -5762334 - MusHAL1 LINE L1 -57 2655 2533 6 1487 184 227 100 57 chr9 118314002 118314072 -5762100 - L3 LINE CR1 -1295 3194 3122 6 1487 1732 203 82 82 chr9 118315019 118315518 -5760654 - RLTR11A2 LTR ERVK -27 500 2 6 1487 947 290 20 31 chr9 118315688 118315980 -5760192 + B4 SINE B4 4 292 0 6 1487 210 71 0 0 chr9 118315998 118316026 -5760146 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1487 703 271 46 17 chr9 118316134 118316307 -5759865 + ID_B1 SINE B4 19 196 -28 6 1487 215 31 0 30 chr9 118316318 118316351 -5759821 + (GGAAA)n Simple_repeat Simple_repeat 2 33 0 6 1487 513 0 0 0 chr9 118316972 118317029 -5759143 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 6 1487 1052 120 0 0 chr9 118317031 118317173 -5758999 - B1_Mur4 SINE Alu -4 146 5 6 1487 403 314 159 36 chr9 118317414 118317609 -5758563 - MIRb SINE MIR -16 252 34 6 1487 791 184 14 0 chr9 118317943 118318090 -5758082 + B1_Mur3 SINE Alu 1 149 0 6 1487 233 119 24 0 chr9 118318098 118318140 -5758032 + (ATG)n Simple_repeat Simple_repeat 1 43 0 6 1487 676 229 149 0 chr9 118318721 118318909 -5757263 + B3 SINE B2 1 216 0 6 1487 183 42 0 0 chr9 118318915 118318939 -5757233 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1487 1095 97 11 6 chr9 118319180 118319357 -5756815 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 1487 1156 108 91 0 chr9 118319388 118319564 -5756608 - B2_Mm2 SINE B2 -3 192 1 6 1487 21 0 0 0 chr9 118319872 118319893 -5756279 + AT_rich Low_complexity Low_complexity 1 21 0 6 1487 447 188 0 12 chr9 118319895 118319981 -5756191 + B4A SINE B4 2 86 -206 6 1487 282 339 0 50 chr9 118320543 118320663 -5755509 - PB1D10 SINE Alu -8 112 1 6 1487 625 253 19 25 chr9 118321753 118321915 -5754257 - RSINE1 SINE B4 -2 163 3 6 1487 215 55 0 53 chr9 118322210 118322248 -5753924 + (TATG)n Simple_repeat Simple_repeat 1 36 0 6 1487 296 179 13 0 chr9 118322309 118322387 -5753785 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1487 1276 108 37 5 chr9 118322410 118322597 -5753575 - B2_Mm2 SINE B2 -1 194 2 6 1487 667 294 138 4 chr9 118322695 118322941 -5753231 + Lx8 LINE L1 7195 7473 0 6 1487 600 292 0 0 chr9 118323292 118323429 -5752743 + ID_B1 SINE B4 80 216 -8 6 1487 383 0 21 0 chr9 118323447 118323494 -5752678 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1487 336 83 0 0 chr9 118323770 118323818 -5752354 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1487 238 351 78 9 chr9 118323876 118323991 -5752181 + B1F SINE Alu 11 133 -16 6 1487 359 148 27 18 chr9 118323991 118324002 -5752170 + polypurine Low_complexity Low_complexity 2 12 0 6 1487 1053 106 0 16 chr9 118324002 118324185 -5751987 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1487 359 148 27 18 chr9 118324185 118324283 -5751889 + GA-rich Low_complexity Low_complexity 13 111 0 6 1487 1036 109 0 17 chr9 118324285 118324462 -5751710 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 6 1487 425 264 123 0 chr9 118324621 118324727 -5751445 + RSINE1 SINE B4 4 122 -43 6 1487 225 174 0 80 chr9 118324792 118324842 -5751330 - L2a LINE L2 -78 3348 3303 7 1487 902 241 147 33 chr9 118327657 118328017 -5748155 - Lx8 LINE L1 -1 7472 7072 7 1487 231 231 19 0 chr9 118328106 118328158 -5748014 + T-rich Low_complexity Low_complexity 1 53 0 7 1487 689 239 0 0 chr9 118328776 118328914 -5747258 + B1_Mur2 SINE Alu 5 142 -7 7 1487 901 204 40 25 chr9 118328910 118329111 -5747061 + B3 SINE B2 11 214 -2 7 1487 738 0 0 0 chr9 118329355 118329437 -5746735 + (GAA)n Simple_repeat Simple_repeat 1 82 0 7 1487 992 136 13 13 chr9 118329447 118329596 -5746576 + B1_Mur2 SINE Alu 1 149 0 7 1487 182 118 29 0 chr9 118329603 118329637 -5746535 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 7 1487 1249 181 18 41 chr9 118329651 118329870 -5746302 + B3 SINE B2 1 214 -2 7 1487 304 298 48 43 chr9 118329993 118330156 -5746016 + MLT1G1 LTR MaLR 145 298 -297 7 1487 489 252 42 35 chr9 118330477 118330621 -5745551 - RSINE1 SINE B4 -18 147 3 7 1487 203 322 32 75 chr9 118330827 118330921 -5745251 + L2b LINE L2 3287 3412 -14 7 1487 607 251 52 17 chr9 118331104 118331278 -5744894 + B3A SINE B2 1 180 -18 7 1487 582 249 179 11 chr9 118331506 118331685 -5744487 + B3 SINE B2 2 210 -6 7 1487 239 352 56 0 chr9 118331887 118331995 -5744177 + RLTR44A LTR ERVK 2 115 -290 7 1487 256 150 49 12 chr9 118331995 118332076 -5744096 + (CA)n Simple_repeat Simple_repeat 2 85 0 7 1487 791 127 29 11 chr9 118332087 118332262 -5743910 + (CA)n Simple_repeat Simple_repeat 1 178 0 7 1487 720 240 23 6 chr9 118333008 118333180 -5742992 - B3A SINE B2 -22 176 2 7 1487 232 319 164 12 chr9 118333300 118333471 -5742701 - L2b LINE L2 -5 3370 3174 7 1487 326 293 440 0 chr9 118333996 118334137 -5742035 + B4A SINE B4 2 204 -88 7 1487 377 258 31 10 chr9 118334207 118334305 -5741867 + ID_B1 SINE B4 117 216 -8 7 1487 240 35 0 0 chr9 118334678 118334707 -5741465 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1487 979 162 11 27 chr9 118334748 118334932 -5741240 - URR1A DNA MER1_type -45 181 1 7 1487 653 205 87 0 chr9 118334992 118335119 -5741053 - B1_Mus2 SINE Alu -9 138 1 7 1487 291 190 155 0 chr9 118335159 118335217 -5740955 + B1_Mus2 SINE Alu 72 138 -9 7 1487 231 36 0 0 chr9 118335725 118335753 -5740419 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1487 270 73 0 0 chr9 118335756 118335797 -5740375 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1487 1268 41 0 0 chr9 118335797 118335943 -5740229 - B1_Mm SINE Alu 0 147 2 7 1487 661 165 61 0 chr9 118335949 118336064 -5740108 - ID_B1 SINE B4 -2 222 101 7 1487 519 242 171 21 chr9 118336737 118336977 -5739195 + B4A SINE B4 2 277 -15 7 1487 396 0 0 0 chr9 118337037 118337081 -5739091 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 7 1487 224 224 0 0 chr9 118337087 118337136 -5739036 + (ATG)n Simple_repeat Simple_repeat 3 51 0 7 1487 219 308 66 33 chr9 118337410 118337561 -5738611 - L2 LINE L2 -456 2963 2808 7 1487 205 309 15 0 chr9 118337825 118337893 -5738279 + GA-rich Low_complexity Low_complexity 1 69 0 7 1487 474 262 0 0 chr9 118338038 118338141 -5738031 + RSINE1 SINE B4 3 105 -60 7 1487 316 324 21 42 chr9 118338277 118338419 -5737753 - Charlie1 DNA MER1_type 0 2781 2643 7 1487 395 292 120 37 chr9 118338406 118338623 -5737549 - Charlie1 DNA MER1_type -2542 239 5 7 1487 365 269 65 0 chr9 118339423 118339516 -5736656 + MER81 DNA AcHobo 1 99 -15 7 1487 3494 33 0 0 chr9 118339601 118339997 -5736175 - MTA_Mm LTR MaLR 0 396 1 7 1487 268 323 83 23 chr9 118340199 118340241 -5735931 - B3 SINE B2 -7 209 168 7 1487 414 0 0 0 chr9 118340241 118340287 -5735885 + (TATG)n Simple_repeat Simple_repeat 4 49 0 7 1487 268 323 83 23 chr9 118340287 118340370 -5735802 - B3 SINE B2 -49 167 76 7 1487 2781 62 6 0 chr9 118340370 118340725 -5735447 + MTB LTR MaLR 1 357 -43 7 1487 438 250 257 27 chr9 118340805 118340953 -5735219 + B3A SINE B2 1 182 -16 7 1487 249 314 23 0 chr9 118341674 118341760 -5734412 + GA-rich Low_complexity Low_complexity 4 91 0 7 1487 243 0 0 0 chr9 118341777 118341804 -5734368 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 7 1487 216 0 0 0 chr9 118342369 118342393 -5733779 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 7 1487 519 308 0 7 chr9 118342575 118342722 -5733450 + RSINE1 SINE B4 3 148 -17 7 1487 455 0 18 0 chr9 118342736 118342791 -5733381 + (TATG)n Simple_repeat Simple_repeat 2 57 0 7 1487 518 197 7 0 chr9 118344450 118344587 -5731585 + (TG)n Simple_repeat Simple_repeat 1 138 0 7 1487 21 0 0 0 chr9 118345361 118345382 -5730790 + AT_rich Low_complexity Low_complexity 1 21 0 7 1487 212 288 0 121 chr9 118345402 118345485 -5730687 - PB1D10 SINE Alu -22 95 23 7 1487 21 36 0 0 chr9 118345877 118345905 -5730267 + AT_rich Low_complexity Low_complexity 1 28 0 7 1487 309 246 175 50 chr9 118345920 118346040 -5730132 - RSINE1 SINE B4 -26 139 5 7 1487 210 359 13 0 chr9 118346452 118346530 -5729642 + MIR SINE MIR 15 93 -169 7 1487 478 250 11 0 chr9 118346828 118346920 -5729252 - RSINE1 SINE B4 -43 122 30 7 1487 1288 34 0 0 chr9 118346941 118347088 -5729084 + B1_Mm SINE Alu 1 147 0 7 1487 186 43 0 0 chr9 118347088 118347111 -5729061 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1487 450 0 0 0 chr9 118347144 118347194 -5728978 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1487 989 223 54 10 chr9 118347199 118347403 -5728769 + B3 SINE B2 3 215 -1 7 1487 396 71 0 0 chr9 118347513 118347569 -5728603 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1487 861 215 126 20 chr9 118347712 118347959 -5728213 + B4A SINE B4 1 273 -19 7 1487 211 247 11 11 chr9 118347980 118348070 -5728102 + (CA)n Simple_repeat Simple_repeat 1 90 0 7 1487 410 274 49 0 chr9 118348144 118348246 -5727926 - U6 snRNA snRNA 0 107 1 7 1487 780 217 89 25 chr9 118348314 118348517 -5727655 + B3 SINE B2 1 216 0 7 1487 913 164 0 0 chr9 118348547 118348687 -5727485 + B1_Mus1 SINE Alu 1 140 -8 7 1487 721 269 66 19 chr9 118348907 118349119 -5727053 + ID_B1 SINE B4 2 223 -1 7 1487 528 65 0 0 chr9 118349119 118349196 -5726976 + (GA)n Simple_repeat Simple_repeat 1 77 0 7 1487 911 59 53 6 chr9 118349196 118349366 -5726806 + (GAA)n Simple_repeat Simple_repeat 3 180 0 7 1487 216 125 0 0 chr9 118349449 118349481 -5726691 - B1_Mus1 SINE Alu -115 33 2 7 1487 607 249 36 46 chr9 118349739 118349933 -5726239 - Lx8 LINE L1 -392 7081 6890 7 1487 468 248 117 56 chr9 118350519 118350681 -5725491 + B4A SINE B4 1 172 -120 7 1487 417 39 0 0 chr9 118350752 118350803 -5725369 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1487 353 85 0 0 chr9 118351345 118351392 -5724780 - HAL1-3A_ME LINE L1 -836 2022 1976 7 1487 421 260 12 0 chr9 118351400 118351569 -5724603 + (TG)n Simple_repeat Simple_repeat 1 171 0 7 1487 569 217 6 0 chr9 118351589 118351764 -5724408 + (TG)n Simple_repeat Simple_repeat 1 176 0 7 1487 434 263 6 0 chr9 118351825 118351996 -5724176 + (TG)n Simple_repeat Simple_repeat 2 173 0 7 1487 297 219 0 0 chr9 118352037 118352110 -5724062 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1487 510 208 118 37 chr9 118352128 118352263 -5723909 - B4 SINE B4 -137 155 10 7 1487 241 367 22 24 chr9 118352586 118352766 -5723406 + MIR3 SINE MIR 2 180 -88 7 1487 1509 41 0 58 chr9 118352954 118353159 -5723013 + B2_Mm2 SINE B2 1 193 -2 7 1487 532 294 70 12 chr9 118353357 118353529 -5722643 + B3A SINE B2 1 182 -16 7 1487 304 330 112 79 chr9 118353563 118353684 -5722488 + B4 SINE B4 3 221 -69 7 1487 380 121 182 0 chr9 118353684 118353775 -5722397 + B1_Mur2 SINE Alu 31 144 -5 7 1487 221 295 0 25 chr9 118354717 118354797 -5721375 + G-rich Low_complexity Low_complexity 1 78 0 7 1487 283 295 192 8 chr9 118355908 118356038 -5720134 - ID_B1 SINE B4 -69 155 2 7 1487 300 327 110 43 chr9 118356107 118356270 -5719902 + MER20 DNA MER1_type 46 219 0 7 1487 285 0 67 0 chr9 118356298 118356343 -5719829 + (CCCCCA)n Simple_repeat Simple_repeat 6 53 0 7 1487 723 279 80 18 chr9 118356885 118357159 -5719013 + B4A SINE B4 2 292 0 7 1487 438 196 0 0 chr9 118357161 118357273 -5718899 + (CA)n Simple_repeat Simple_repeat 1 112 0 7 185 344 265 294 39 chr9 118357967 118358120 -5718052 - ID_B1 SINE B4 0 224 33 7 1488 393 249 14 1 chr9 118358769 118358864 -5717308 + B4A SINE B4 8 104 -188 7 1488 480 281 35 49 chr9 118358878 118359020 -5717152 + RSINE1 SINE B4 20 159 -6 7 1488 401 320 31 77 chr9 118359053 118359249 -5716923 + B4 SINE B4 106 292 0 7 1488 303 122 0 68 chr9 118359267 118359355 -5716817 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 7 1488 394 232 105 18 chr9 118359492 118359606 -5716566 - MLT1H LTR MaLR 0 549 426 7 1488 486 0 0 0 chr9 118359623 118359677 -5716495 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1488 548 67 0 22 chr9 118359679 118359770 -5716402 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 7 1488 400 362 41 52 chr9 118359783 118359955 -5716217 - B4A SINE B4 -118 174 5 7 1488 183 255 9 109 chr9 118360059 118360169 -5716003 + L2b LINE L2 3265 3363 -12 7 1488 212 104 0 77 chr9 118360880 118360932 -5715240 + T-rich Low_complexity Low_complexity 1 48 0 7 1488 831 144 7 27 chr9 118360933 118361083 -5715089 - B1_Mus1 SINE Alu 0 148 2 7 1488 518 259 69 0 chr9 118361109 118361225 -5714947 - RSINE1 SINE B4 -18 147 24 7 1488 181 185 185 0 chr9 118361438 118361492 -5714680 + L2b LINE L2 3339 3402 -24 7 1488 402 287 0 29 chr9 118361694 118361798 -5714374 - RSINE1 SINE B4 -64 101 1 7 1488 734 242 25 12 chr9 118362180 118362343 -5713829 + RSINE1 SINE B4 1 165 0 7 1488 225 296 103 87 chr9 118362190 118362364 -5713808 + B3A SINE B2 10 188 -10 7 1488 186 43 0 0 chr9 118362364 118362387 -5713785 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1488 286 284 41 21 chr9 118362945 118363042 -5713130 + B4A SINE B4 27 125 -167 8 1488 450 0 0 0 chr9 118363148 118363198 -5712974 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1488 377 235 122 75 chr9 118363219 118363366 -5712806 + RSINE1 SINE B4 12 165 0 8 1488 643 274 64 69 chr9 118363620 118363824 -5712348 + Lx8 LINE L1 7105 7307 -166 8 1488 402 21 0 0 chr9 118363850 118363897 -5712275 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1488 270 265 81 87 chr9 118364997 118365146 -5711026 - RMER12 LTR ERVK -466 856 709 8 1488 251 204 217 75 chr9 118365159 118365265 -5710907 - RSINE1 SINE B4 -2 163 43 8 1488 297 217 0 42 chr9 118365308 118365380 -5710792 + B4 SINE B4 216 284 -8 8 1488 242 320 117 29 chr9 118365419 118365522 -5710650 - LTR16C LTR ERVL -125 364 253 8 1488 309 239 68 148 chr9 118366306 118366361 -5709811 + B4 SINE B4 69 217 -75 8 1488 768 113 0 9 chr9 118366361 118366468 -5709704 + B1_Mur4 SINE Alu 36 141 -9 8 1488 870 158 11 11 chr9 118366827 118367006 -5709166 + CT-rich Low_complexity Low_complexity 2 180 0 8 1488 26 0 0 0 chr9 118367531 118367557 -5708615 + AT_rich Low_complexity Low_complexity 1 26 0 8 1488 26 0 0 0 chr9 118367649 118367675 -5708497 + AT_rich Low_complexity Low_complexity 1 26 0 8 1488 369 0 0 0 chr9 118367682 118367723 -5708449 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1488 681 241 14 7 chr9 118367727 118367869 -5708303 - RSINE1 SINE B4 -21 144 2 8 1488 213 39 0 0 chr9 118368011 118368037 -5708135 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1488 2643 59 3 3 chr9 118368632 118368955 -5707217 + ORR1A2 LTR MaLR 5 327 0 8 1488 978 253 65 15 chr9 118368981 118369242 -5706930 + B4 SINE B4 1 274 -18 8 1488 284 298 9 19 chr9 118369251 118369357 -5706815 + (CA)n Simple_repeat Simple_repeat 2 106 0 8 1488 1197 74 0 0 chr9 118369625 118369773 -5706399 + B1_Mus1 SINE Alu 1 148 0 8 1488 26 0 0 0 chr9 118369773 118369799 -5706373 + AT_rich Low_complexity Low_complexity 1 26 0 8 1488 819 80 0 0 chr9 118369799 118369911 -5706261 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 8 1488 2091 98 40 3 chr9 118369932 118370230 -5705942 + RLTR27 LTR ERVK 1 309 0 8 1488 246 239 14 69 chr9 118371359 118371431 -5704741 + B4 SINE B4 4 71 -221 8 1488 383 194 0 0 chr9 118371374 118371436 -5704736 + ID4 SINE ID 14 75 -8 8 1488 360 0 0 0 chr9 118371447 118371487 -5704685 + (GGA)n Simple_repeat Simple_repeat 3 42 0 8 1488 1932 207 57 0 chr9 118371718 118372104 -5704068 + MTD LTR MaLR 12 419 0 8 1488 451 224 31 87 chr9 118372212 118372339 -5703833 + ID_B1 SINE B4 103 222 -2 8 1488 859 181 0 0 chr9 118372366 118372504 -5703668 + B1_Mur1 SINE Alu 3 140 -9 8 1488 234 91 0 0 chr9 118372506 118372539 -5703633 + (TAA)n Simple_repeat Simple_repeat 3 35 0 8 1488 600 14 0 0 chr9 118372643 118372712 -5703460 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 8 1488 303 28 0 0 chr9 118373124 118373160 -5703012 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1488 416 123 0 14 chr9 118373172 118373246 -5702926 + (CA)n Simple_repeat Simple_repeat 1 73 0 8 1488 255 279 89 16 chr9 118373895 118374019 -5702153 - LTR78 LTR ERV1 -41 1263 1131 8 1488 858 94 40 46 chr9 118374050 118374372 -5701800 + (TAGA)n Simple_repeat Simple_repeat 1 320 0 8 1488 305 335 94 26 chr9 118374377 118374644 -5701528 + L1MEd LINE L1 959 1243 -4876 8 1488 301 318 0 43 chr9 118374697 118374789 -5701383 + PB1 SINE Alu 37 124 -3 8 1488 950 335 19 33 chr9 118375251 118375618 -5700554 - MLT1A0 LTR MaLR 0 365 4 8 1488 263 197 16 16 chr9 118375627 118375689 -5700483 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1488 356 293 36 25 chr9 118375842 118375969 -5700203 - B1F SINE Alu -19 130 1 8 1488 472 141 14 0 chr9 118376111 118376182 -5699990 - U4 snRNA snRNA -73 72 1 8 1488 827 140 162 32 chr9 118376373 118376558 -5699614 + B3 SINE B2 8 216 0 8 1488 388 296 43 50 chr9 118376681 118376705 -5699467 + B1F SINE Alu 11 148 -1 8 1488 599 244 0 0 chr9 118376705 118376820 -5699352 + ID_B1 SINE B4 109 223 -1 8 1488 406 250 17 51 chr9 118377031 118377149 -5699023 - MER5B DNA MER1_type -47 131 18 8 1488 43 20 0 0 chr9 118377151 118377201 -5698971 + AT_rich Low_complexity Low_complexity 1 50 0 8 1488 276 276 13 13 chr9 118378142 118378219 -5697953 + GA-rich Low_complexity Low_complexity 2 78 0 8 1488 193 29 59 0 chr9 118378372 118378406 -5697766 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 8 1488 216 0 0 0 chr9 118378738 118378762 -5697410 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1488 467 165 19 0 chr9 118379071 118379174 -5696998 + CT-rich Low_complexity Low_complexity 3 107 0 8 1488 335 268 73 0 chr9 118379512 118379594 -5696578 + PB1D7 SINE Alu 17 104 -16 8 1488 513 0 0 0 chr9 118379603 118379660 -5696512 + (CATA)n Simple_repeat Simple_repeat 4 60 0 8 1488 241 269 51 51 chr9 118379696 118379794 -5696378 + B4A SINE B4 1 98 -194 8 1488 601 129 150 68 chr9 118380999 118381132 -5695040 - B1_Mus2 SINE Alu -1 146 3 8 1488 945 47 0 0 chr9 118381293 118381420 -5694752 + (TC)n Simple_repeat Simple_repeat 2 128 0 8 1488 1206 61 0 0 chr9 118382229 118382376 -5693796 + B1_Mus2 SINE Alu 1 147 0 8 1488 1056 88 0 51 chr9 118382469 118382625 -5693547 + B1_Mus1 SINE Alu 1 148 0 8 1488 277 75 91 36 chr9 118382712 118382822 -5693350 + (CTATA)n Simple_repeat Simple_repeat 5 120 0 8 1488 203 141 76 0 chr9 118382880 118382972 -5693200 + (CTATA)n Simple_repeat Simple_repeat 2 100 0 8 1488 435 151 93 56 chr9 118383167 118383280 -5692892 - Lx9 LINE L1 0 7644 7524 8 1488 531 82 0 0 chr9 118383280 118383353 -5692819 + (TATG)n Simple_repeat Simple_repeat 4 76 0 8 1488 435 151 93 56 chr9 118383353 118383400 -5692772 - Lx9 LINE L1 -121 7523 7478 8 1488 419 107 0 12 chr9 118383620 118383705 -5692467 + (CAGG)n Simple_repeat Simple_repeat 2 85 0 8 1488 273 75 0 0 chr9 118384194 118384234 -5691938 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1488 630 39 0 0 chr9 118387436 118387513 -5688659 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 8 1488 309 68 0 0 chr9 118387855 118387899 -5688273 + (GGA)n Simple_repeat Simple_repeat 1 44 0 8 1488 27 0 0 0 chr9 118388014 118388041 -5688131 + GC_rich Low_complexity Low_complexity 1 27 0 8 1488 297 0 0 0 chr9 118389240 118389273 -5686899 + (GA)n Simple_repeat Simple_repeat 1 33 0 8 1488 234 0 0 0 chr9 118390751 118390777 -5685395 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1488 327 261 21 32 chr9 118390781 118390876 -5685296 - PB1D10 SINE Alu -7 110 17 8 1488 384 295 24 8 chr9 118391473 118391596 -5684576 - ID_B1 SINE B4 -32 192 68 8 1488 438 211 0 0 chr9 118391763 118391834 -5684338 - ID4_ SINE ID -11 72 2 8 1488 198 0 0 0 chr9 118391875 118391897 -5684275 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1488 1884 144 48 15 chr9 118392005 118392401 -5683771 - RMER17C LTR ERVK 0 410 2 8 1488 210 71 0 0 chr9 118392417 118392445 -5683727 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 8 1488 704 161 32 83 chr9 118392445 118392601 -5683571 - B1_Mur4 SINE Alu -1 149 2 8 1488 21 0 0 0 chr9 118392603 118392624 -5683548 + AT_rich Low_complexity Low_complexity 1 21 0 8 1488 588 273 37 37 chr9 118392627 118392817 -5683355 - B3A SINE B2 0 198 9 8 1488 565 217 80 12 chr9 118393000 118393163 -5683009 - ID_B1 SINE B4 0 224 51 8 1488 189 121 0 0 chr9 118394473 118394506 -5681666 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 8 1488 180 0 0 0 chr9 118394673 118394693 -5681479 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 1488 609 58 0 0 chr9 118395305 118395391 -5680781 + (TC)n Simple_repeat Simple_repeat 1 86 0 8 1488 258 32 0 0 chr9 118395391 118395421 -5680751 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1488 261 139 0 0 chr9 118396585 118396628 -5679544 + (A)n Simple_repeat Simple_repeat 1 43 0 8 1488 186 71 0 0 chr9 118397258 118397286 -5678886 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 8 1488 788 139 7 0 chr9 118397693 118397837 -5678335 + (GA)n Simple_repeat Simple_repeat 2 146 0 8 1488 258 42 41 20 chr9 118398094 118398143 -5678029 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 8 1488 246 174 0 0 chr9 118398436 118398482 -5677690 + T-rich Low_complexity Low_complexity 1 46 0 8 1488 314 262 0 183 chr9 118398482 118398613 -5677559 - ID_B1 SINE B4 0 224 118 8 1488 438 194 92 0 chr9 118398604 118398702 -5677470 - PB1D7 SINE Alu -6 114 8 8 1488 381 193 70 35 chr9 118399206 118399292 -5676880 - B1_Mus2 SINE Alu -56 91 3 8 1488 800 275 61 21 chr9 118399403 118399749 -5676423 - L1MA4 LINE L1 -274 6029 5669 8 1488 677 245 36 56 chr9 118399768 118399963 -5676209 - B3A SINE B2 -7 191 1 8 1488 3541 20 2 0 chr9 118399968 118400363 -5675809 - MTA_Mm LTR MaLR 0 396 1 8 1488 1132 237 13 164 chr9 118400925 118401309 -5674863 + MTE2a LTR MaLR 1 326 -53 8 1488 1644 146 11 0 chr9 118401302 118401563 -5674609 + RLTR15 LTR ERVK 96 359 0 8 1488 245 174 0 149 chr9 118401563 118401601 -5674571 + MTE2a LTR MaLR 327 353 -26 8 1488 769 140 112 0 chr9 118401621 118401764 -5674408 + B3 SINE B2 58 216 0 8 1488 692 177 23 8 chr9 118401768 118401899 -5674273 + B1_Mur1 SINE Alu 1 133 -16 8 1488 345 186 28 34 chr9 118401900 118402078 -5674094 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 8 1488 306 148 0 0 chr9 118402100 118402154 -5674018 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1488 198 0 0 0 chr9 118402154 118402176 -5673996 + (GA)n Simple_repeat Simple_repeat 2 23 0 8 1488 255 328 0 16 chr9 118402187 118402249 -5673923 + RSINE1 SINE B4 3 63 -102 8 1488 1162 160 24 29 chr9 118402331 118402608 -5673564 + ORR1B2-int LTR MaLR 1217 1680 -55 9 1488 2234 155 11 50 chr9 118402609 118402990 -5673182 + ORR1B2 LTR MaLR 1 366 -1 9 1488 355 176 59 0 chr9 118402992 118403060 -5673112 - PB1D9 SINE Alu -40 80 9 9 1488 716 253 101 20 chr9 118403337 118403535 -5672637 - B3 SINE B2 -2 214 1 9 1488 756 141 86 0 chr9 118403761 118403889 -5672283 - B1_Mur2 SINE Alu -9 140 2 9 1488 201 129 0 0 chr9 118404064 118404095 -5672077 + (C)n Simple_repeat Simple_repeat 1 31 0 9 1488 714 274 6 0 chr9 118404128 118404285 -5671887 - RSINE1 SINE B4 -2 163 6 9 1488 785 208 78 119 chr9 118404336 118404554 -5671618 - B3 SINE B2 -7 209 1 9 1488 248 236 296 16 chr9 118404678 118404729 -5671443 + B4 SINE B4 15 100 -192 9 1488 212 253 116 35 chr9 118404729 118404815 -5671357 + PB1D10 SINE Alu 2 94 -23 9 1488 575 164 273 93 chr9 118404871 118405032 -5671140 + B3 SINE B2 3 192 -24 9 1488 207 0 0 0 chr9 118405036 118405059 -5671113 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 9 1488 297 0 0 0 chr9 118405579 118405612 -5670560 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1488 744 228 19 48 chr9 118406577 118406784 -5669388 - B3 SINE B2 -15 201 1 9 1488 794 213 61 47 chr9 118407265 118407477 -5668695 - B3 SINE B2 0 216 2 9 1488 1116 262 129 6 chr9 118407514 118407840 -5668332 - MTEa LTR MaLR 0 379 14 9 1488 756 53 0 0 chr9 118408570 118408664 -5667508 - B1_Mm SINE Alu 0 147 54 9 1488 330 26 0 0 chr9 118408723 118408762 -5667410 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1488 311 304 0 0 chr9 118408813 118408882 -5667290 - ID4 SINE ID -13 70 2 9 1488 345 260 10 59 chr9 118408890 118408992 -5667180 - PB1D10 SINE Alu -3 114 18 9 1488 328 215 25 0 chr9 118409020 118409099 -5667073 - ID4_ SINE ID 0 83 3 9 1488 408 40 0 0 chr9 118409476 118409526 -5666646 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1488 1085 96 6 17 chr9 118409804 118409985 -5666187 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 9 1488 507 73 0 0 chr9 118409989 118410057 -5666115 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 9 1488 767 135 53 0 chr9 118410057 118410190 -5665982 - B1_Mur4 SINE Alu -9 141 2 9 1488 802 124 33 0 chr9 118410716 118410837 -5665335 - B1_Mus2 SINE Alu 0 147 23 9 1488 243 258 0 43 chr9 118410957 118411026 -5665146 + ID4_ SINE ID 8 73 -10 9 1488 3022 20 0 0 chr9 118411433 118411778 -5664394 - L1Md_T LINE L1 -525 6057 5713 9 1488 4500 26 0 0 chr9 118411778 118412285 -5663887 + L1Md_T LINE L1 6074 6580 -2 9 1488 224 212 0 7 chr9 118412294 118412341 -5663831 + MIR SINE MIR 79 127 -141 9 1488 301 305 81 68 chr9 118412459 118412492 -5663680 - L1M2 LINE L1 -1356 4521 4489 9 1488 213 39 0 0 chr9 118412492 118412518 -5663654 + (GGGGA)n Simple_repeat Simple_repeat 1 26 0 9 1488 658 294 28 44 chr9 118412518 118412886 -5663286 - L1M2 LINE L1 -1650 4493 4121 9 1488 964 232 0 31 chr9 118412990 118413186 -5662986 - B3 SINE B2 -5 211 22 9 1488 427 229 9 0 chr9 118413190 118413295 -5662877 - L1M2 LINE L1 -2398 3745 3640 9 1488 241 268 0 0 chr9 118413330 118413401 -5662771 - L1M2 LINE L1 -2579 3564 3494 9 1488 424 226 97 37 chr9 118413459 118413596 -5662576 + MT2A LTR ERVL 407 584 0 9 1488 211 150 0 24 chr9 118413657 118413698 -5662474 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 9 1488 857 143 21 7 chr9 118413699 118413840 -5662332 - B1_Mur4 SINE Alu -2 148 6 9 1488 1082 215 8 26 chr9 118413851 118414085 -5662087 + MTD LTR MaLR 70 299 -120 9 1488 267 127 206 0 chr9 118414167 118414230 -5661942 + MER21B LTR ERV1 612 687 -176 9 1488 400 231 62 55 chr9 118414221 118414234 -5661938 - B1_Mm SINE Alu -18 129 118 9 1488 572 30 81 0 chr9 118414234 118414333 -5661839 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 9 1488 450 206 18 53 chr9 118414333 118414447 -5661725 - PB1D7 SINE Alu -30 117 1 9 1488 298 311 19 19 chr9 118414447 118414476 -5661696 - B4A SINE B4 -206 86 58 9 1488 331 268 69 11 chr9 118414691 118414778 -5661394 + PB1 SINE Alu 17 108 -19 9 1488 911 203 67 14 chr9 118414780 118414990 -5661182 - ID_B1 SINE B4 -3 221 1 9 1488 341 206 0 10 chr9 118415004 118415107 -5661065 + (CCAA)n Simple_repeat Simple_repeat 2 103 0 9 1488 215 194 0 0 chr9 118415390 118415426 -5660746 + (CCG)n Simple_repeat Simple_repeat 1 36 0 9 1488 26 30 0 0 chr9 118415541 118415574 -5660598 + GC_rich Low_complexity Low_complexity 1 33 0 9 1488 796 248 70 94 chr9 118416665 118416777 -5659395 - B4 SINE B4 0 292 201 9 1488 605 175 262 0 chr9 118416777 118416937 -5659235 - B3 SINE B2 -11 205 4 9 1488 796 248 70 94 chr9 118416937 118417122 -5659050 - B4 SINE B4 -92 200 2 9 1488 24 32 0 0 chr9 118417744 118417775 -5658397 + AT_rich Low_complexity Low_complexity 1 31 0 9 1488 316 285 21 90 chr9 118419092 118419281 -5656891 + Lx8 LINE L1 7152 7327 -146 9 1488 234 0 0 0 chr9 118419330 118419356 -5656816 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1488 21 36 0 0 chr9 118419571 118419599 -5656573 + AT_rich Low_complexity Low_complexity 1 28 0 9 1488 370 206 0 0 chr9 118420649 118420712 -5655460 - ID4 SINE ID -19 64 2 9 1488 308 355 0 11 chr9 118421329 118421423 -5654749 - B4A SINE B4 -176 116 24 9 1488 245 51 26 0 chr9 118422744 118422783 -5653389 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 9 1488 1208 36 0 0 chr9 118422785 118422925 -5653247 - B1_Mus1 SINE Alu -7 141 2 9 1488 312 191 57 65 chr9 118422935 118423058 -5653114 - L1MD3 LINE L1 -1 7994 7873 9 1488 380 242 35 145 chr9 118423796 118423871 -5652301 + B3 SINE B2 1 58 -158 9 1488 2850 131 187 25 chr9 118423871 118424396 -5651776 - RMER19C LTR ERVK -1 610 1 9 1488 380 242 35 145 chr9 118424396 118424465 -5651707 + B3 SINE B2 59 129 -87 9 1488 834 227 38 38 chr9 118424545 118424728 -5651444 - B3 SINE B2 -25 191 9 9 1488 414 204 81 7 chr9 118425181 118425309 -5650863 + L1M4 LINE L1 4179 4313 -1830 9 1488 484 208 45 36 chr9 118425520 118425630 -5650542 - RSINE1 SINE B4 0 165 55 9 1488 343 290 191 16 chr9 118425839 118426158 -5650014 - L1M4 LINE L1 -2406 3740 3366 9 1488 765 235 29 0 chr9 118426908 118426927 -5649245 + L1_Mus4 LINE L1 6663 6681 -327 9 1488 210 37 0 0 chr9 118426927 118426954 -5649218 + (C)n Simple_repeat Simple_repeat 1 27 0 9 1488 889 175 0 0 chr9 118426954 118427104 -5649068 + L1_Mus4 LINE L1 6347 6495 -141 9 1488 398 305 14 34 chr9 118427104 118427250 -5648922 + B4A SINE B4 118 260 -32 9 1488 252 0 0 0 chr9 118428667 118428695 -5647477 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1488 592 221 71 35 chr9 118429732 118429873 -5646299 - B1_Mur2 SINE Alu -1 148 3 9 1488 334 276 0 75 chr9 118429783 118429889 -5646283 - MT2B LTR ERVL -349 252 155 9 1488 293 269 37 37 chr9 118430601 118430682 -5645490 + PB1 SINE Alu 46 126 -1 9 1488 25 0 0 0 chr9 118431198 118431223 -5644949 + AT_rich Low_complexity Low_complexity 1 25 0 9 1488 622 238 69 8 chr9 118432182 118432313 -5643859 + RSINE1 SINE B4 1 139 -26 9 1488 24 53 0 0 chr9 118432332 118432370 -5643802 + AT_rich Low_complexity Low_complexity 1 38 0 9 1488 330 26 0 0 chr9 118432497 118432536 -5643636 + (CCTG)n Simple_repeat Simple_repeat 4 42 0 9 1488 320 0 25 0 chr9 118432558 118432598 -5643574 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 9 1488 1244 166 9 9 chr9 118432621 118432840 -5643332 + URR1A DNA MER1_type 3 221 -5 9 1488 4156 136 102 88 chr9 118432840 118433734 -5642438 - RMER17A2 LTR ERVK 0 906 1 9 1488 296 260 152 9 chr9 118433766 118433871 -5642301 + MurSatRep1 Unknown Unknown 168 287 -1850 9 1488 266 229 115 0 chr9 118433867 118433963 -5642209 - L1M5 LINE L1 -281 5892 5786 9 1488 207 285 142 57 chr9 118434618 118434676 -5641496 - MIR SINE MIR -48 220 159 9 1488 216 135 0 0 chr9 118434676 118434713 -5641459 + (CAT)n Simple_repeat Simple_repeat 3 39 0 9 1488 207 278 157 50 chr9 118434713 118434795 -5641377 - MIR SINE MIR -104 158 67 9 1488 301 307 134 25 chr9 118435809 118435966 -5640206 - MIRc SINE MIR -76 192 19 9 1488 21 0 0 0 chr9 118436801 118436822 -5639350 + AT_rich Low_complexity Low_complexity 1 21 0 9 1488 508 375 0 30 chr9 118436834 118436999 -5639173 - RSINE1 SINE B4 0 165 6 9 1488 971 193 4 86 chr9 118437059 118437111 -5639061 - B3 SINE B2 -3 213 168 9 1488 453 116 0 0 chr9 118437111 118437180 -5638992 + (TA)n Simple_repeat Simple_repeat 1 69 0 9 1488 971 193 4 86 chr9 118437180 118437359 -5638813 - B3 SINE B2 -49 167 1 9 1488 21 0 0 0 chr9 118437857 118437878 -5638294 + AT_rich Low_complexity Low_complexity 1 21 0 9 1488 280 304 62 51 chr9 118438016 118438179 -5637993 - MIRb SINE MIR -74 194 25 9 1488 1075 83 21 0 chr9 118438604 118438749 -5637423 + B1_Mus1 SINE Alu 1 148 0 9 1488 233 219 45 45 chr9 118439022 118439089 -5637083 - L1_Mm LINE L1 -3661 2222 2156 9 1488 531 0 0 0 chr9 118439706 118439765 -5636407 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1488 337 171 305 0 chr9 118440877 118440959 -5635213 - PB1D10 SINE Alu 0 117 11 9 1488 248 258 0 43 chr9 118440909 118440978 -5635194 - B4A SINE B4 -147 145 80 9 1488 33 25 0 0 chr9 118441111 118441151 -5635021 + AT_rich Low_complexity Low_complexity 1 40 0 9 1488 1142 179 20 0 chr9 118441151 118441346 -5634826 - B3 SINE B2 -10 206 8 9 1488 23 0 0 0 chr9 118441637 118441660 -5634512 + AT_rich Low_complexity Low_complexity 1 23 0 9 1488 202 175 0 48 chr9 118442498 118442540 -5633632 + GA-rich Low_complexity Low_complexity 1 40 0 9 1488 305 0 20 0 chr9 118442766 118442816 -5633356 - L1Md_F3 LINE L1 0 6584 6534 9 1488 241 264 107 71 chr9 118443981 118444218 -5631954 + RMER17D2 LTR ERVK 242 467 -342 9 1488 664 177 50 0 chr9 118444218 118444359 -5631813 - B1_Mus1 SINE Alu 0 148 1 9 1488 241 264 107 71 chr9 118444359 118444447 -5631725 + RMER17D2 LTR ERVK 468 579 -230 9 1488 279 0 0 0 chr9 118444695 118444726 -5631446 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1488 893 170 0 7 chr9 118444741 118444889 -5631283 + B1_Mus1 SINE Alu 1 147 -1 9 1488 234 0 0 0 chr9 118444911 118444937 -5631235 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 1488 335 297 78 43 chr9 118445039 118445155 -5631017 - PB1D7 SINE Alu 0 120 1 1 1488 354 45 0 0 chr9 118448337 118448381 -5627791 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1 1488 289 349 71 19 chr9 118449491 118449646 -5626526 - MIR SINE MIR -70 192 30 1 1488 422 265 111 32 chr9 118451094 118451347 -5624825 + B4 SINE B4 4 276 -16 1 1488 182 91 30 0 chr9 118451392 118451425 -5624747 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1488 300 332 120 72 chr9 118451737 118451987 -5624185 - L1ME4a LINE L1 -207 5917 5656 1 1488 923 273 51 33 chr9 118452110 118452383 -5623789 + B4 SINE B4 9 286 -6 1 1488 462 18 0 0 chr9 118452389 118452444 -5623728 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1488 370 94 15 15 chr9 118453574 118453639 -5622533 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 1 1488 1347 111 16 0 chr9 118453639 118453829 -5622343 - B2_Mm2 SINE B2 0 195 3 1 1488 340 261 237 36 chr9 118453839 118454058 -5622114 - Charlie1 DNA MER1_type -154 2627 2365 1 1488 375 216 8 165 chr9 118456208 118456341 -5619831 + MT2B LTR ERVL 153 264 -337 1 1488 862 137 0 61 chr9 118456227 118456375 -5619797 + B1_Mus2 SINE Alu 8 146 -1 1 1488 612 183 17 0 chr9 118457154 118457269 -5618903 + PB1D10 SINE Alu 1 117 0 1 1488 273 29 0 0 chr9 118457621 118457655 -5618517 + (CTG)n Simple_repeat Simple_repeat 2 35 0 1 1488 284 325 0 36 chr9 118458239 118458322 -5617850 - ID4 SINE ID -3 80 1 1 1488 1557 42 5 11 chr9 118458376 118458567 -5617605 - B2_Mm1a SINE B2 -3 190 1 1 1488 21 36 0 0 chr9 118458568 118458596 -5617576 + AT_rich Low_complexity Low_complexity 1 28 0 1 1488 395 284 80 20 chr9 118458630 118458781 -5617391 - RSINE1 SINE B4 -2 163 4 1 1488 333 258 10 10 chr9 118458808 118458906 -5617266 + B4A SINE B4 1 98 -194 1 1488 298 292 56 0 chr9 118459638 118459727 -5616445 - RSINE1 SINE B4 -61 104 11 1 1488 328 290 64 27 chr9 118459884 118459994 -5616178 - PB1D7 SINE Alu 0 120 7 1 1488 716 158 78 57 chr9 118461731 118461872 -5614300 + B1_Mus2 SINE Alu 3 146 -1 1 1488 698 158 0 14 chr9 118464058 118464199 -5611973 + CT-rich Low_complexity Low_complexity 2 140 0 1 1488 219 260 0 0 chr9 118464209 118464259 -5611913 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 1 1488 311 303 103 29 chr9 118465800 118465936 -5610236 + HAL1-3A_ME LINE L1 910 1055 -1803 1 1488 354 45 0 0 chr9 118469272 118469316 -5606856 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1488 191 247 11 125 chr9 118470311 118470399 -5605773 + MIR3 SINE MIR 8 85 -123 1 1488 902 214 21 21 chr9 118470679 118470865 -5605307 + B3 SINE B2 1 186 -30 1 1488 380 191 75 53 chr9 118470947 118471041 -5605131 + PB1D10 SINE Alu 21 116 -1 1 1488 3562 25 0 0 chr9 118471434 118471830 -5604342 - MTA_Mm LTR MaLR 0 396 1 1 1488 271 278 186 0 chr9 118472393 118472490 -5603682 - ID_B1 SINE B4 -7 217 103 1 1488 1465 188 78 45 chr9 118472813 118473170 -5603002 + ORR1C2 LTR MaLR 1 369 -15 1 1488 332 283 199 7 chr9 118473187 118473333 -5602839 - B4A SINE B4 -36 256 83 1 1488 279 234 28 122 chr9 118475488 118475595 -5600577 - PB1 SINE Alu 0 127 31 1 1488 816 197 146 11 chr9 118476517 118476702 -5599470 - B3 SINE B2 -6 210 1 1 1488 801 267 111 103 chr9 118476810 118477188 -5598984 - L1MB7 LINE L1 -165 6019 5690 1 1488 505 224 87 29 chr9 118477188 118477326 -5598846 - B1_Mus2 SINE Alu 0 147 2 1 1488 898 251 87 37 chr9 118477326 118477892 -5598280 - L1MB7 LINE L1 -485 5689 5083 1 1488 1043 213 43 27 chr9 118478378 118478634 -5597538 - ORR1D1 LTR MaLR -104 270 11 1 1488 188 244 22 0 chr9 118478939 118478984 -5597188 - MIR SINE MIR -33 229 184 1 1488 21 57 0 0 chr9 118479720 118479755 -5596417 + AT_rich Low_complexity Low_complexity 1 35 0 1 1488 834 123 0 0 chr9 118479827 118479957 -5596215 + (TTCC)n Simple_repeat Simple_repeat 2 131 0 1 1488 558 0 0 0 chr9 118479957 118480019 -5596153 + (TTC)n Simple_repeat Simple_repeat 2 63 0 1 1488 243 0 0 0 chr9 118482244 118482271 -5593901 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1488 204 67 0 0 chr9 118487114 118487144 -5589028 + (C)n Simple_repeat Simple_repeat 1 30 0 1 1488 307 253 53 0 chr9 118487222 118487297 -5588875 - ID4_ SINE ID -4 79 1 1 1488 258 341 54 21 chr9 118487692 118487785 -5588387 + B1F SINE Alu 18 113 -36 1 1489 345 238 3 17 chr9 118489398 118489483 -5586689 - B3 SINE B2 -87 108 25 1 1489 339 25 0 0 chr9 118491812 118491852 -5584320 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1489 409 234 217 28 chr9 118492224 118492404 -5583768 - MER58B DNA MER1_type 0 341 128 1 1489 1292 256 36 12 chr9 118492435 118492767 -5583405 - Lx8 LINE L1 -93 7380 7041 1 1489 1021 229 5 0 chr9 118492801 118492989 -5583183 + B3 SINE B2 1 189 -27 1 1489 266 221 40 20 chr9 118493757 118493846 -5582326 - RSINE1 SINE B4 -196 96 1 1 1489 369 261 35 18 chr9 118495723 118495836 -5580336 - B3A SINE B2 -7 191 77 1 1489 688 245 21 27 chr9 118496593 118496793 -5579379 + B3 SINE B2 2 192 -3 1 1489 336 321 99 0 chr9 118497087 118497218 -5578954 + B1F1 SINE Alu 6 149 0 1 1489 258 240 116 53 chr9 118497487 118497676 -5578496 + L1_Mur2 LINE L1 3151 3351 -2526 1 1489 261 287 154 17 chr9 118499114 118499231 -5576941 - MLT1H LTR MaLR -337 212 80 1 1489 553 239 35 28 chr9 118499788 118499930 -5576242 - B4A SINE B4 -105 187 45 1 1489 394 119 226 0 chr9 118500207 118500291 -5575881 + MTD LTR MaLR 1 103 -276 1 1489 441 0 0 0 chr9 118500309 118500358 -5575814 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1489 716 162 286 0 chr9 118500669 118500854 -5575318 + MTD LTR MaLR 179 416 -3 1 1489 694 266 28 6 chr9 118501482 118501660 -5574512 - B3A SINE B2 -16 182 1 3 1489 562 194 14 61 chr9 118502610 118502758 -5573414 + RSINE1 SINE B4 2 142 -23 4 1489 900 234 149 15 chr9 118503111 118503380 -5572792 + MTE2b LTR MaLR 1 305 -74 5 1489 295 265 145 0 chr9 118503362 118503445 -5572727 + MTEa LTR MaLR 211 305 -74 6 1489 295 265 145 0 chr9 118503427 118503510 -5572662 + MTEa LTR MaLR 211 305 -74 6 1489 295 265 145 0 chr9 118503492 118503575 -5572597 + MTEa LTR MaLR 211 305 -74 6 1489 295 265 145 0 chr9 118503557 118503640 -5572532 + MTEa LTR MaLR 211 305 -74 6 1489 425 250 162 29 chr9 118503622 118503758 -5572414 + MTEa LTR MaLR 211 364 -15 6 1489 284 266 0 0 chr9 118504479 118504539 -5571633 - ID4_ SINE ID -85 67 8 7 1489 195 100 0 0 chr9 118504934 118504964 -5571208 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1489 1100 256 33 12 chr9 118504994 118505239 -5570933 - B4A SINE B4 -20 272 23 9 1489 788 255 151 42 chr9 118505288 118505635 -5570537 + MTD LTR MaLR 1 378 -1 1 1489 182 266 125 0 chr9 118505682 118505746 -5570426 - L3 LINE CR1 -3488 1001 930 1 1489 251 262 36 48 chr9 118506360 118506444 -5569728 + MLT1B LTR MaLR 300 382 -8 1 1489 509 356 26 17 chr9 118506518 118506752 -5569420 - Tigger5 DNA MER2_type -16 2390 2155 1 1489 697 228 22 7 chr9 118507553 118507690 -5568482 - B1F1 SINE Alu -8 141 3 1 1489 1028 217 223 3 chr9 118507837 118508001 -5568171 - ORR1D2 LTR MaLR -9 361 181 1 1489 504 0 0 0 chr9 118508001 118508057 -5568115 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1489 1028 217 223 3 chr9 118508057 118508188 -5567984 - ORR1D2 LTR MaLR -190 180 2 1 1489 849 287 106 8 chr9 118508655 118508901 -5567271 + B4 SINE B4 2 271 -21 1 1489 4793 102 3 14 chr9 118509035 118509767 -5566405 + Lx2 LINE L1 5925 6645 -352 1 1489 1384 113 9 0 chr9 118509765 118509986 -5566186 + Lx2 LINE L1 6775 6997 0 1 1489 313 309 107 38 chr9 118510029 118510160 -5566012 + L1MEd LINE L1 23 162 -5957 1 1489 258 133 22 0 chr9 118510344 118510389 -5565783 - ORR1D1 LTR MaLR 0 374 329 2 1489 438 85 84 8 chr9 118510484 118510603 -5565569 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 2 1489 342 133 71 18 chr9 118510659 118510827 -5565345 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 2 1489 464 129 79 11 chr9 118510850 118511123 -5565049 + (TCTA)n Simple_repeat Simple_repeat 1 291 0 2 1489 292 255 50 30 chr9 118511395 118511496 -5564676 + PB1D10 SINE Alu 1 103 -14 2 1489 363 44 0 0 chr9 118511658 118511703 -5564469 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1489 1452 264 64 70 chr9 118511738 118512267 -5563905 - Lx8 LINE L1 -144 7329 6804 2 1489 654 267 116 93 chr9 118512391 118512701 -5563471 + MTEa LTR MaLR 12 328 -51 2 1489 502 212 43 17 chr9 118513154 118513269 -5562903 - B3 SINE B2 -98 118 1 2 1489 1050 205 24 5 chr9 118513455 118513666 -5562506 - B3 SINE B2 -1 215 1 2 1489 396 0 0 0 chr9 118513739 118513783 -5562389 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1489 651 275 175 55 chr9 118513825 118514133 -5562039 + MTD LTR MaLR 20 364 -55 2 1489 339 286 94 8 chr9 118514155 118514282 -5561890 + MTEa LTR MaLR 282 419 0 2 1489 2183 150 106 18 chr9 118514297 118514684 -5561488 + MTC LTR MaLR 1 421 0 3 1489 507 232 224 10 chr9 118514700 118514892 -5561280 - MLT1D LTR MaLR -20 485 253 3 1489 229 250 102 0 chr9 118515199 118515307 -5560865 + L1MB2 LINE L1 5932 6050 -121 3 1489 34 24 0 0 chr9 118515764 118515805 -5560367 + GC_rich Low_complexity Low_complexity 1 41 0 3 1489 21 100 0 0 chr9 118516010 118516080 -5560092 + GC_rich Low_complexity Low_complexity 1 70 0 3 1489 1223 55 7 0 chr9 118517493 118517639 -5558533 + B1_Mus2 SINE Alu 1 147 0 3 1489 234 0 0 0 chr9 118517639 118517665 -5558507 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1489 247 196 45 153 chr9 118518157 118518314 -5557858 - MER63D DNA AcHobo -8 1053 914 3 1489 201 82 61 0 chr9 118518321 118518370 -5557802 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1489 320 365 36 0 chr9 118518815 118518952 -5557220 - L1M5 LINE L1 -380 5744 5603 3 1489 240 239 64 8 chr9 118519363 118519442 -5556730 - MTE2b LTR MaLR -14 365 277 4 1489 189 0 0 0 chr9 118520018 118520039 -5556133 + (CTG)n Simple_repeat Simple_repeat 2 22 0 4 1489 790 173 12 0 chr9 118520037 118520199 -5555973 + CT-rich Low_complexity Low_complexity 3 166 0 4 1489 241 302 0 65 chr9 118520666 118520758 -5555414 - MER3 DNA MER1_type -22 187 102 4 1489 1246 208 58 71 chr9 118521847 118522142 -5554030 - B4 SINE B4 0 292 2 4 1489 273 260 13 64 chr9 118522958 118523036 -5553136 - MTEa LTR MaLR -3 376 303 4 1489 468 318 29 58 chr9 118523155 118523362 -5552810 - MT2A LTR ERVL -103 430 230 4 1489 591 254 193 69 chr9 118523732 118523965 -5552207 + B4 SINE B4 31 292 0 4 1489 243 0 0 0 chr9 118524070 118524097 -5552075 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1489 330 87 0 0 chr9 118524692 118524738 -5551434 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1489 361 236 179 42 chr9 118525343 118525561 -5550611 - ORR1A3-int LTR MaLR -1323 640 402 5 1489 405 0 0 0 chr9 118525562 118525607 -5550565 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1489 279 308 1 13 chr9 118525953 118526041 -5550131 - MIR SINE MIR -138 130 43 5 1489 226 351 75 38 chr9 118526209 118526342 -5549830 - MIR SINE MIR -48 214 77 5 1489 332 194 16 0 chr9 118526372 118526431 -5549741 - MTEb LTR MaLR -5 374 315 5 1489 707 241 17 33 chr9 118526431 118526611 -5549561 - RLTR11B LTR ERVK 0 453 277 5 1489 919 230 19 76 chr9 118526688 118527003 -5549169 - RLTR11B LTR ERVK -154 299 3 5 1489 464 246 39 104 chr9 118527003 118527132 -5549040 - MTEb LTR MaLR -53 326 208 5 1489 1071 236 67 0 chr9 118527350 118527575 -5548597 - MTEb LTR MaLR -133 246 7 5 1489 544 269 53 70 chr9 118527782 118528082 -5548090 - MLT1H LTR MaLR -49 500 206 5 1489 243 404 9 0 chr9 118528118 118528232 -5547940 - MLT1H LTR MaLR -415 134 20 5 1489 457 331 53 16 chr9 118528440 118528627 -5547545 - MIRb SINE MIR -13 255 62 5 1489 666 255 7 7 chr9 118528731 118528881 -5547291 + ID_B1 SINE B4 69 218 -6 5 1489 1034 249 75 8 chr9 118528887 118529154 -5547018 + B4A SINE B4 2 286 -6 5 1489 236 405 0 0 chr9 118529169 118529327 -5546845 + (CA)n Simple_repeat Simple_repeat 2 159 0 6 1489 452 330 6 6 chr9 118529289 118529531 -5546641 + (CA)n Simple_repeat Simple_repeat 1 242 0 6 1489 457 341 6 0 chr9 118529589 118529765 -5546407 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1489 482 335 6 0 chr9 118529823 118529999 -5546173 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1489 336 233 0 0 chr9 118530647 118530720 -5545452 + RMER30 DNA MER1_type 99 171 -31 6 1489 212 250 48 36 chr9 118531291 118531374 -5544798 + MIR SINE MIR 87 170 -92 6 1489 301 218 37 37 chr9 118532316 118532397 -5543775 - HAL1-3A_ME LINE L1 -492 2366 2286 6 1489 636 226 87 7 chr9 118532438 118532576 -5543596 - B1_Mur3 SINE Alu 0 149 1 6 1489 1505 268 62 17 chr9 118532598 118533130 -5543042 - Lx8 LINE L1 -141 7332 6777 6 1489 244 179 149 0 chr9 118533161 118533228 -5542944 - ID4 SINE ID -6 77 1 6 1489 396 0 0 0 chr9 118533890 118533934 -5542238 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1489 553 239 129 47 chr9 118534548 118534719 -5541453 + B4 SINE B4 108 292 0 6 1489 2156 187 11 5 chr9 118534988 118535365 -5540807 - MTC LTR MaLR -25 396 18 6 1489 408 20 0 0 chr9 118535404 118535453 -5540719 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1489 220 336 46 33 chr9 118536060 118536211 -5539961 - L2 LINE L2 -416 3003 2851 7 1489 919 304 31 12 chr9 118536502 118536758 -5539414 + B4A SINE B4 5 265 -27 7 1489 207 324 9 37 chr9 118536810 118536919 -5539253 + (CATA)n Simple_repeat Simple_repeat 4 109 0 7 1489 192 77 0 0 chr9 118536925 118536951 -5539221 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1489 241 233 52 52 chr9 118537043 118537120 -5539052 + Charlie10a DNA MER1_type 86 162 -118 7 1489 647 267 44 64 chr9 118537494 118537698 -5538474 - RMER30 DNA MER1_type -2 200 1 7 1489 251 219 24 219 chr9 118537730 118537765 -5538407 + ID4_ SINE ID 2 29 -54 7 1489 1122 63 28 14 chr9 118537765 118537910 -5538262 - B1_Mus1 SINE Alu 0 148 2 7 1489 251 219 24 219 chr9 118537910 118537956 -5538216 + ID4_ SINE ID 30 67 -16 7 1489 701 139 0 32 chr9 118537964 118538150 -5538022 + GA-rich Low_complexity Low_complexity 1 180 0 7 1489 213 65 0 0 chr9 118538151 118538182 -5537990 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 8 1489 355 212 11 96 chr9 118538202 118538213 -5537959 + MT2B LTR ERVL 155 157 -444 8 1489 652 58 0 0 chr9 118538213 118538299 -5537873 + B1_Mus2 SINE Alu 1 86 -61 8 1489 250 242 146 0 chr9 118538303 118538388 -5537784 - L1ME2z LINE L1 -154 6010 5914 8 1489 364 349 0 0 chr9 118538394 118538500 -5537672 + RSINE1 SINE B4 60 165 0 8 1489 354 206 0 27 chr9 118538501 118538576 -5537596 - L1MCa LINE L1 -4546 1962 1890 8 1489 537 253 0 0 chr9 118538578 118538740 -5537432 + (CA)n Simple_repeat Simple_repeat 2 163 0 8 1489 267 103 0 0 chr9 118539568 118539607 -5536565 + (GGA)n Simple_repeat Simple_repeat 1 39 0 8 1489 202 311 13 26 chr9 118539784 118539860 -5536312 - L2 LINE L2 -2817 602 528 7 1489 460 297 70 25 chr9 118540167 118540409 -5535763 - L1MB1 LINE L1 -86 6082 5830 8 1489 992 72 7 0 chr9 118540411 118540549 -5535623 + (TTTTC)n Simple_repeat Simple_repeat 5 143 0 8 1489 270 276 9 15 chr9 118540578 118540684 -5535488 - Lx4A LINE L1 -2005 5780 5664 9 1489 1216 55 0 7 chr9 118540684 118540831 -5535341 + B1_Mus2 SINE Alu 2 147 0 9 1489 264 321 40 94 chr9 118540831 118540999 -5535173 - Lx4A LINE L1 -485 5686 5521 9 1489 354 254 0 0 chr9 118541041 118541108 -5535064 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 9 1489 263 181 69 55 chr9 118541114 118541218 -5534954 - Lx4A LINE L1 -684 5487 5386 9 1489 381 286 16 82 chr9 118541758 118541880 -5534292 + B4A SINE B4 153 266 -26 9 1489 540 45 0 0 chr9 118541883 118541950 -5534222 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 1489 251 237 0 41 chr9 118542790 118542913 -5533259 + CT-rich Low_complexity Low_complexity 1 118 0 9 1489 344 327 71 85 chr9 118543631 118543853 -5532319 + MER2 DNA MER2_type 2 220 -125 9 1489 514 269 14 50 chr9 118543853 118543994 -5532178 + B4A SINE B4 1 136 -156 9 1489 630 239 56 7 chr9 118544649 118544792 -5531380 + RSINE1 SINE B4 3 152 -13 9 1489 2290 142 49 5 chr9 118544844 118545212 -5530960 - ORR1C2 LTR MaLR 0 384 1 9 1489 208 327 37 65 chr9 118546040 118546148 -5530024 + MIR3 SINE MIR 60 164 -44 1 1489 291 250 0 32 chr9 118547100 118547162 -5529010 + ID SINE ID 10 69 -155 1 1489 282 56 0 0 chr9 118547199 118547235 -5528937 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 1 1489 210 282 102 124 chr9 118548097 118548283 -5527889 - MIR3 SINE MIR -21 187 6 1 1489 370 339 191 17 chr9 118548700 118548931 -5527241 + B4A SINE B4 2 272 -20 1 1489 219 36 0 0 chr9 118548940 118548968 -5527204 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1489 22 35 0 0 chr9 118549035 118549064 -5527108 + AT_rich Low_complexity Low_complexity 1 29 0 1 1489 318 51 0 0 chr9 118549619 118549658 -5526514 - HAL1-3A_ME LINE L1 -840 2018 1980 1 1489 247 135 50 30 chr9 118549662 118549761 -5526411 + (TG)n Simple_repeat Simple_repeat 1 101 0 1 1489 332 265 138 42 chr9 118549769 118549958 -5526214 - B3 SINE B2 -9 207 1 1 1489 285 98 0 0 chr9 118549966 118550007 -5526165 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1489 4250 50 0 0 chr9 118550007 118550507 -5525665 - L1Md_F2 LINE L1 -18 6564 6065 1 1489 252 0 0 0 chr9 118550883 118550911 -5525261 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1489 446 240 200 0 chr9 118551217 118551342 -5524830 + RSINE1 SINE B4 2 151 -14 1 1489 205 200 39 20 chr9 118551511 118551562 -5524610 + MIRb SINE MIR 124 175 -93 1 1489 339 284 36 27 chr9 118551755 118551867 -5524305 - PB1D10 SINE Alu -2 115 3 1 1489 192 324 14 0 chr9 118552312 118552383 -5523789 - MIRc SINE MIR -3 265 194 1 1489 859 273 33 60 chr9 118552447 118552747 -5523425 + B4A SINE B4 1 292 0 1 1489 324 221 0 0 chr9 118552749 118552862 -5523310 + (CA)n Simple_repeat Simple_repeat 1 113 0 1 1489 324 226 0 0 chr9 118552917 118553041 -5523131 + (CA)n Simple_repeat Simple_repeat 1 124 0 1 1489 463 283 7 14 chr9 118553480 118553627 -5522545 - B1F2 SINE Alu 0 149 4 1 1489 197 241 16 79 chr9 118553640 118553703 -5522469 - MIRm SINE MIR -123 153 95 1 1489 186 71 0 0 chr9 118553886 118553914 -5522258 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 1 1489 336 239 10 107 chr9 118554306 118554320 -5521852 - B3A SINE B2 0 198 186 1 1489 261 83 0 0 chr9 118554320 118554356 -5521816 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1489 336 175 7 108 chr9 118554356 118554503 -5521669 - B3A SINE B2 -13 185 5 1 1489 393 276 155 28 chr9 118554521 118554882 -5521290 - L1MB3 LINE L1 -4 6179 5773 1 1489 502 264 82 37 chr9 118555530 118555747 -5520425 + B4A SINE B4 26 284 -8 1 1489 429 308 41 57 chr9 118555780 118556097 -5520075 + L1MA4 LINE L1 5594 5905 -395 1 1489 1137 248 117 14 chr9 118556123 118556483 -5519689 + MTD LTR MaLR 1 397 -22 1 1489 448 266 26 17 chr9 118557018 118557133 -5519039 - PB1D10 SINE Alu -1 116 1 1 1489 633 224 105 0 chr9 118557133 118557199 -5518973 - ID SINE ID -143 81 1 1 1489 400 276 307 23 chr9 118558757 118558972 -5517200 + B4 SINE B4 2 277 -15 1 1489 438 20 0 0 chr9 118559029 118559080 -5517092 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1489 243 296 0 0 chr9 118559227 118559281 -5516891 + (CGTG)n Simple_repeat Simple_repeat 1 54 0 1 1489 2680 61 3 0 chr9 118559283 118559609 -5516563 - ORR1A2 LTR MaLR 0 327 1 1 1489 594 271 136 0 chr9 118559609 118559764 -5516408 - B3A SINE B2 -19 179 4 1 1489 216 250 0 0 chr9 118560482 118560526 -5515646 + MIR SINE MIR 75 118 -90 1 1489 640 252 189 49 chr9 118560754 118561000 -5515172 - B4 SINE B4 0 292 2 1 1489 409 294 0 0 chr9 118562234 118562319 -5513853 - RSINE1 SINE B4 0 165 81 1 1489 228 67 0 0 chr9 118562319 118562349 -5513823 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1489 740 178 100 27 chr9 118562352 118562502 -5513670 - B3A SINE B2 -37 161 1 1 1489 201 39 0 0 chr9 118562504 118562530 -5513642 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1489 417 274 106 44 chr9 118563111 118563271 -5512901 - RMER30 DNA MER1_type -32 170 1 1 1489 293 0 130 0 chr9 118564874 118564951 -5511221 + (CAGC)n Simple_repeat Simple_repeat 4 90 0 1 1489 686 281 138 42 chr9 118565243 118565503 -5510669 - B4 SINE B4 -7 285 1 1 1489 253 102 0 33 chr9 118565939 118566000 -5510172 + (TTTTTG)n Simple_repeat Simple_repeat 1 59 0 1 1489 1111 76 0 0 chr9 118566000 118566145 -5510027 - B1_Mus2 SINE Alu -2 145 1 1 1489 2384 95 3 0 chr9 118566141 118566466 -5509706 - ORR1A2 LTR MaLR -1 326 1 1 1489 248 278 43 93 chr9 118566940 118566990 -5509182 - B1_Mur2 SINE Alu -17 132 89 1 1489 479 220 62 62 chr9 118566990 118567150 -5509022 - RSINE1 SINE B4 -2 163 4 1 1489 262 238 266 37 chr9 118567150 118567238 -5508934 - B1F2 SINE Alu -32 117 1 1 1489 321 204 301 0 chr9 118567156 118567249 -5508923 - ID_B1 SINE B4 -35 189 69 1 1489 201 171 0 0 chr9 118568180 118568215 -5507957 + T-rich Low_complexity Low_complexity 1 35 0 1 1489 291 211 10 21 chr9 118568404 118568501 -5507671 + GA-rich Low_complexity Low_complexity 3 98 0 1 1489 558 248 9 0 chr9 118568558 118568671 -5507501 + PB1D10 SINE Alu 4 117 0 1 1489 335 256 12 37 chr9 118569986 118570067 -5506105 - ID4 SINE ID -3 80 2 1 1489 824 280 223 3 chr9 118571147 118571434 -5504738 - ORR1E LTR MaLR -6 353 4 1 1489 843 226 5 42 chr9 118572050 118572239 -5503933 + B3A SINE B2 1 182 -16 1 1489 369 95 0 0 chr9 118572250 118572313 -5503859 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 1 1489 765 168 182 0 chr9 118572333 118572476 -5503696 + B3 SINE B2 29 197 -19 1 1489 312 345 21 41 chr9 118573489 118573634 -5502538 + Charlie12 DNA MER1_type 7 148 -2725 1 1489 234 131 0 62 chr9 118574917 118574982 -5501190 + C-rich Low_complexity Low_complexity 5 65 0 1 1489 246 62 0 0 chr9 118574985 118575017 -5501155 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1489 218 128 43 0 chr9 118575031 118575078 -5501094 + (CATG)n Simple_repeat Simple_repeat 2 50 0 1 1489 301 169 692 20 chr9 118575079 118575222 -5500950 - B4 SINE B4 -44 248 10 1 1489 207 0 0 0 chr9 118575578 118575601 -5500571 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1489 519 247 81 76 chr9 118576298 118576495 -5499677 - B3A SINE B2 0 198 1 1 1489 326 227 135 11 chr9 118576503 118576592 -5499580 - PB1D10 SINE Alu -8 109 10 1 1489 426 303 20 72 chr9 118576940 118577093 -5499079 + B4 SINE B4 1 145 -147 1 1489 207 276 0 0 chr9 118577103 118577179 -5498993 + (TATG)n Simple_repeat Simple_repeat 4 79 0 1 1489 234 128 0 0 chr9 118577181 118577220 -5498952 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1489 370 299 118 44 chr9 118578136 118578304 -5497868 - MIR SINE MIR -89 179 1 1 1489 1026 314 66 0 chr9 118579036 118579354 -5496818 + MER2 DNA MER2_type 2 340 -5 1 1489 498 293 51 45 chr9 118580307 118580326 -5495846 + ID_B1 SINE B4 66 222 -1 1 1489 719 191 73 7 chr9 118580326 118580463 -5495709 + B1F2 SINE Alu 4 149 0 1 1489 198 205 39 0 chr9 118582055 118582133 -5494039 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1489 613 132 14 0 chr9 118582132 118582276 -5493896 + (GA)n Simple_repeat Simple_repeat 1 146 0 1 1489 578 236 75 114 chr9 118582478 118582517 -5493655 - B3A SINE B2 -5 193 158 1 1489 351 0 0 0 chr9 118582517 118582556 -5493616 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1489 578 236 75 114 chr9 118582556 118582717 -5493455 - B3A SINE B2 -41 157 1 1 1489 324 0 0 0 chr9 118582779 118582815 -5493357 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1489 414 0 0 0 chr9 118582815 118582860 -5493312 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1489 525 237 43 9 chr9 118582876 118582991 -5493181 - RSINE1 SINE B4 -30 135 17 1 1489 873 271 9 9 chr9 118583116 118583332 -5492840 - ID_B1 SINE B4 -7 217 2 1 1489 708 242 73 52 chr9 118583676 118583868 -5492304 + ID_B1 SINE B4 29 224 0 1 1489 310 101 29 0 chr9 118584000 118584069 -5492103 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 1 1489 1383 62 95 5 chr9 118584070 118584281 -5491891 - LSU-rRNA_Hsa rRNA rRNA -1 5034 4805 1 1489 3854 172 70 120 chr9 118584335 118585391 -5490781 - RMER1B Other Other -19 1047 45 1 1489 215 250 26 26 chr9 118585552 118585562 -5490610 + (TG)n Simple_repeat Simple_repeat 1 10 0 1 1489 279 79 0 0 chr9 118585562 118585600 -5490572 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1 1489 215 250 26 26 chr9 118585600 118585667 -5490505 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1489 464 262 106 6 chr9 118585740 118585901 -5490271 - B4A SINE B4 -115 177 1 1 1489 180 185 105 53 chr9 118587280 118587337 -5488835 - L3 LINE CR1 -2352 2137 2078 1 1489 1170 260 142 41 chr9 118587907 118588272 -5487900 - MTD LTR MaLR 0 419 18 1 1489 24 0 0 0 chr9 118588358 118588382 -5487790 + AT_rich Low_complexity Low_complexity 1 24 0 1 1489 747 91 116 0 chr9 118588382 118588503 -5487669 - L1Md_F2 LINE L1 -1 6581 6447 1 1489 494 256 55 50 chr9 118588548 118588729 -5487443 - B3A SINE B2 -15 183 2 1 1489 375 23 0 0 chr9 118588759 118588803 -5487369 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1489 615 300 154 13 chr9 118588823 118589056 -5487116 - B4 SINE B4 -26 266 1 1 1489 482 264 9 0 chr9 118589482 118589588 -5486584 + B4 SINE B4 107 213 -79 1 1489 609 279 57 19 chr9 118589620 118589777 -5486395 + RSINE1 SINE B4 3 165 0 1 1489 246 328 37 63 chr9 118589777 118589809 -5486363 + B2_Mm2 SINE B2 2 185 -10 1 1489 547 271 187 8 chr9 118590454 118590700 -5485472 - MER33 DNA MER1_type -34 290 1 1 1489 320 278 150 22 chr9 118591733 118591913 -5484259 + MIR SINE MIR 34 236 -26 2 1489 800 133 23 0 chr9 118592436 118592564 -5483608 - B1_Mur4 SINE Alu 0 150 20 2 1489 321 146 93 111 chr9 118592480 118592588 -5483584 - MT2B LTR ERVL -344 257 152 2 1489 976 228 72 28 chr9 118592596 118593092 -5483080 - Lx7 LINE L1 -4 7692 7119 2 1489 479 287 16 0 chr9 118594077 118594206 -5481966 - L1ME2 LINE L1 -179 5985 5855 2 1489 1276 233 160 22 chr9 118594304 118594672 -5481500 + MTD LTR MaLR 1 419 0 2 1489 2104 127 53 3 chr9 118595737 118596077 -5480095 - RLTR15 LTR ERVK 0 359 3 2 1489 735 180 0 0 chr9 118596457 118596607 -5479565 + GA-rich Low_complexity Low_complexity 1 150 0 2 1489 1240 251 107 23 chr9 118596665 118597011 -5479161 - MTEa LTR MaLR -4 375 1 2 1489 216 179 0 0 chr9 118597834 118597873 -5478299 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 2 1489 283 306 12 0 chr9 118597912 118597997 -5478175 - B1F SINE Alu -63 86 1 2 1489 431 240 86 48 chr9 118599052 118599220 -5476952 - MTD LTR MaLR -243 176 20 2 1489 267 302 0 0 chr9 118600141 118600204 -5475968 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 2 1489 230 312 12 12 chr9 118600204 118600215 -5475957 + B4 SINE B4 27 81 -211 2 1489 387 270 27 124 chr9 118600561 118600747 -5475425 + RMER15 LTR ERVL 336 503 -72 2 1489 588 238 107 62 chr9 118602110 118602352 -5473820 - LTR50 LTR ERVL -540 255 3 2 1489 279 261 0 0 chr9 118602957 118603022 -5473150 - ID4_ SINE ID -16 67 3 2 1489 886 308 95 35 chr9 118604553 118604920 -5471252 - MLT2D LTR ERVL -21 393 5 2 1489 253 257 26 39 chr9 118604923 118605000 -5471172 - LTR16C LTR ERVL -123 366 291 2 1489 534 277 89 18 chr9 118606326 118606495 -5469677 + B3A SINE B2 1 181 -17 2 1489 461 264 32 24 chr9 118608552 118608676 -5467496 + B1F SINE Alu 25 149 0 2 1489 226 299 15 0 chr9 118609483 118609550 -5466622 + MER53 DNA hAT 6 73 -120 2 1489 266 252 306 0 chr9 118609669 118609827 -5466345 + Tigger7 DNA MER2_type 2276 2483 -8 2 1489 499 299 84 40 chr9 118611126 118611377 -5464795 - MER113 DNA MER1_type -159 362 101 2 1489 440 319 36 0 chr9 118612045 118612183 -5463989 + RSINE1 SINE B4 3 145 -20 2 1489 810 166 0 14 chr9 118612630 118612857 -5463315 + (CA)n Simple_repeat Simple_repeat 1 223 0 2 1489 623 177 6 18 chr9 118612888 118613055 -5463117 + (CA)n Simple_repeat Simple_repeat 2 166 0 2 1489 635 188 6 17 chr9 118613074 118613253 -5462919 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1489 675 188 6 11 chr9 118613272 118613450 -5462722 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1489 335 233 0 27 chr9 118613493 118613678 -5462494 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1489 1494 201 133 11 chr9 118614760 118615112 -5461060 - MTD LTR MaLR -14 405 11 2 1489 533 291 7 41 chr9 118615264 118615411 -5460761 - ID_B1 SINE B4 -1 223 82 2 1489 396 360 70 9 chr9 118616178 118616391 -5459781 - MER63D DNA AcHobo -835 226 1 2 1489 270 0 0 0 chr9 118616541 118616571 -5459601 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1489 1258 41 0 7 chr9 118617037 118617186 -5458986 - B1_Mus1 SINE Alu 0 148 1 2 1489 1029 176 62 57 chr9 118617278 118617489 -5458683 - B3 SINE B2 0 216 5 2 1489 323 229 32 24 chr9 118617686 118617811 -5458361 + CT-rich Low_complexity Low_complexity 1 126 0 2 1489 21 0 0 0 chr9 118617840 118617861 -5458311 + AT_rich Low_complexity Low_complexity 1 21 0 2 1489 407 271 86 0 chr9 118618352 118618492 -5457680 - L1MC4 LINE L1 -434 7608 7457 2 1489 274 308 163 41 chr9 118619209 118619571 -5456601 - L2 LINE L2 -401 3018 2613 2 1489 216 175 31 16 chr9 118619682 118619746 -5456426 + GA-rich Low_complexity Low_complexity 1 65 0 2 1490 278 308 55 0 chr9 118620198 118620289 -5455883 + Charlie5 DNA MER1_type 22 117 -2507 2 1490 390 293 65 26 chr9 118620309 118620463 -5455709 - RSINE1 SINE B4 -3 162 3 2 1490 562 89 22 0 chr9 118621270 118621360 -5454812 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 2 1490 1084 137 174 0 chr9 118622649 118622839 -5453333 - URR1B DNA MER1_type 0 225 3 2 1490 528 274 22 0 chr9 118623028 118623163 -5453009 + RSINE1 SINE B4 4 141 -24 2 1490 258 105 0 0 chr9 118623167 118623205 -5452967 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1490 200 312 31 15 chr9 118623372 118623437 -5452735 + MIRc SINE MIR 39 104 -164 2 1490 710 247 132 68 chr9 118624197 118624273 -5451899 - MLT1B LTR MaLR -19 371 290 2 1490 342 0 0 0 chr9 118624273 118624311 -5451861 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1490 710 247 132 68 chr9 118624311 118624529 -5451643 - MLT1B LTR MaLR -101 289 60 2 1490 235 292 0 65 chr9 118624659 118624736 -5451436 - MER3 DNA MER1_type -99 110 39 2 1490 655 231 77 121 chr9 118625964 118626401 -5449771 + MTD LTR MaLR 14 406 -13 2 1490 251 329 0 0 chr9 118626621 118626694 -5449478 + L2b LINE L2 3296 3368 -7 2 1490 356 173 13 0 chr9 118626740 118626815 -5449357 - L1M4 LINE L1 -1100 5046 4971 2 1490 1071 271 30 80 chr9 118627524 118627885 -5448287 - ORR1E LTR MaLR -6 353 11 2 1490 559 222 134 64 chr9 118629653 118629855 -5446317 - B3 SINE B2 0 216 1 2 1490 200 242 83 157 chr9 118631949 118632057 -5444115 - MER5A DNA MER1_type 0 189 90 2 1490 1213 188 134 109 chr9 118632068 118632427 -5443745 + ORR1D2 LTR MaLR 1 368 -2 2 1490 771 259 184 48 chr9 118632606 118632693 -5443479 - MTE2a LTR MaLR -2 377 275 2 1490 219 36 0 0 chr9 118632693 118632721 -5443451 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 2 1490 771 259 184 48 chr9 118632721 118632965 -5443207 - MTE2a LTR MaLR -105 274 2 2 1490 2343 94 28 0 chr9 118633410 118633728 -5442444 - ORR1A2 LTR MaLR 0 327 1 2 1490 431 331 233 14 chr9 118633744 118634032 -5442140 - MLT1G1 LTR MaLR -189 390 40 2 1490 800 220 15 50 chr9 118635423 118635624 -5440548 - B3A SINE B2 0 198 5 2 1490 187 280 94 57 chr9 118635788 118635894 -5440278 - MIRb SINE MIR -132 136 27 2 1490 492 18 0 0 chr9 118635917 118635974 -5440198 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1490 380 286 67 0 chr9 118637421 118637540 -5438632 + ORR1E LTR MaLR 8 134 -225 2 1490 272 153 62 124 chr9 118637593 118637690 -5438482 + ORR1E LTR MaLR 255 345 -34 2 1490 21 36 0 0 chr9 118638052 118638080 -5438092 + AT_rich Low_complexity Low_complexity 1 28 0 2 1490 270 0 0 0 chr9 118638676 118638706 -5437466 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1490 680 153 18 26 chr9 118638765 118638879 -5437293 - B1_Mur2 SINE Alu 0 149 37 2 1490 1097 170 233 51 chr9 118640313 118640605 -5435567 - MTD LTR MaLR -51 368 24 2 1490 460 171 0 0 chr9 118640597 118640667 -5435505 - B3A SINE B2 -124 74 5 2 1490 349 366 0 22 chr9 118641518 118641652 -5434520 + Tigger5 DNA MER2_type 107 237 -2169 2 1490 290 253 27 0 chr9 118641656 118641731 -5434441 + Tigger5 DNA MER2_type 2294 2370 -36 2 1490 452 248 136 75 chr9 118641790 118642004 -5434168 - MTE2a LTR MaLR -152 227 1 2 1490 207 0 0 0 chr9 118643286 118643309 -5432863 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1490 1189 223 19 128 chr9 118644206 118644637 -5431535 + ORR1C2 LTR MaLR 1 384 0 2 1490 236 307 91 13 chr9 118645621 118645776 -5430396 - MIR SINE MIR -75 193 20 2 1490 523 347 160 14 chr9 118645966 118646241 -5429931 - MER115 DNA Tip100 -25 668 354 2 1490 477 0 0 0 chr9 118646511 118646564 -5429608 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1490 213 276 101 10 chr9 118646924 118647023 -5429149 - L3 LINE CR1 -255 4234 4127 2 1490 228 265 0 0 chr9 118647300 118647368 -5428804 + (TGGG)n Simple_repeat Simple_repeat 1 68 0 2 1490 297 0 0 0 chr9 118650153 118650186 -5425986 + (CAGA)n Simple_repeat Simple_repeat 3 35 0 2 1490 1956 128 43 20 chr9 118651846 118652197 -5423975 - RLTR15 LTR ERVK 0 359 1 2 1490 259 286 0 0 chr9 118652764 118652820 -5423352 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1490 942 271 0 5 chr9 118652848 118653048 -5423124 - B4A SINE B4 0 292 94 2 1490 784 269 16 32 chr9 118653078 118653266 -5422906 - B3 SINE B2 -28 188 4 2 1490 794 206 37 79 chr9 118654137 118654353 -5421819 + ID_B1 SINE B4 2 208 -16 2 1490 270 0 0 0 chr9 118654368 118654398 -5421774 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1490 2084 225 35 44 chr9 118654578 118655099 -5421073 + RMER19C LTR ERVK 96 611 0 2 1490 360 346 73 59 chr9 118655108 118655397 -5420775 + L1M5 LINE L1 5260 5552 -572 2 1490 240 221 23 105 chr9 118656090 118656176 -5419996 - B4A SINE B4 0 292 214 2 1490 732 255 52 16 chr9 118656167 118656358 -5419814 - B3A SINE B2 -2 214 17 2 1490 194 289 161 34 chr9 118656512 118656630 -5419542 - MIR SINE MIR -94 168 36 2 1490 252 0 0 0 chr9 118656990 118657018 -5419154 + (CAGC)n Simple_repeat Simple_repeat 4 31 0 2 1490 499 263 149 8 chr9 118657649 118657783 -5418389 + RSINE1 SINE B4 7 159 -6 2 1490 243 330 77 50 chr9 118657655 118657837 -5418335 + B3A SINE B2 12 198 0 2 1490 258 241 0 0 chr9 118658331 118658418 -5417754 + (CATG)n Simple_repeat Simple_repeat 4 90 0 2 1490 225 287 98 49 chr9 118658666 118658809 -5417363 + MIRb SINE MIR 49 198 -64 2 1490 396 311 71 82 chr9 118659574 118659854 -5416318 + B4 SINE B4 5 281 -11 2 1490 189 0 0 0 chr9 118659880 118659901 -5416271 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1490 240 100 0 0 chr9 118659917 118659957 -5416215 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1490 261 0 0 0 chr9 118659969 118659998 -5416174 + (TTAGG)n Simple_repeat Simple_repeat 3 31 0 2 1490 996 203 66 0 chr9 118660674 118660871 -5415301 + B3 SINE B2 1 210 -6 2 1490 399 231 6 12 chr9 118660964 118661126 -5415046 + (TGGA)n Simple_repeat Simple_repeat 2 162 0 2 1490 1252 151 74 12 chr9 118661595 118661837 -5414335 + Lx2 LINE L1 6739 6995 -2 2 1490 864 229 14 38 chr9 118661871 118662080 -5414092 + B3 SINE B2 2 205 -11 3 1490 336 161 0 0 chr9 118662095 118662157 -5414015 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1490 481 324 78 3 chr9 118662158 118662316 -5413856 - B3A SINE B2 -51 165 1 3 1490 252 274 31 21 chr9 118662694 118662791 -5413381 + GA-rich Low_complexity Low_complexity 3 100 0 3 1490 183 139 0 0 chr9 118662801 118662837 -5413335 + (AGGGGG)n Simple_repeat Simple_repeat 5 40 0 3 1490 302 67 22 0 chr9 118663186 118663231 -5412941 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 3 1490 404 331 32 54 chr9 118663884 118664034 -5412138 - MLT1G3 LTR MaLR -2 593 448 3 1490 681 242 0 0 chr9 118664034 118664162 -5412010 + B3A SINE B2 2 129 -69 3 1490 1302 186 223 18 chr9 118664175 118664503 -5411669 - MTC-int LTR MaLR -863 395 1 3 1490 2383 146 43 5 chr9 118664507 118664900 -5411272 - MTC LTR MaLR -9 412 5 3 1490 523 288 65 73 chr9 118666242 118666474 -5409698 - Charlie4a DNA MER1_type -1 507 278 3 1490 392 309 0 0 chr9 118666532 118666616 -5409556 - B4 SINE B4 -83 209 126 3 1490 461 213 0 16 chr9 118666647 118666771 -5409401 + CT-rich Low_complexity Low_complexity 2 123 0 3 1490 313 206 149 14 chr9 118666771 118666845 -5409327 - B4 SINE B4 -205 87 4 3 1490 269 296 151 34 chr9 118666878 118667084 -5409088 - Charlie4a DNA MER1_type -278 230 1 3 1490 735 174 0 0 chr9 118667239 118667388 -5408784 + (CA)n Simple_repeat Simple_repeat 2 150 0 3 1490 245 302 242 0 chr9 118667764 118667913 -5408259 - MLT1E1 LTR MaLR -45 635 451 3 1490 565 235 128 12 chr9 118667959 118668131 -5408041 - MLT1E1 LTR MaLR -409 245 54 3 1490 240 35 0 0 chr9 118668451 118668480 -5407692 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 3 1490 218 136 0 22 chr9 118668482 118668527 -5407645 + C-rich Low_complexity Low_complexity 2 45 0 3 1490 476 260 0 9 chr9 118668644 118668749 -5407423 - PB1D10 SINE Alu -13 104 1 3 1490 196 312 112 35 chr9 118668757 118668873 -5407299 - MIRb SINE MIR -81 187 63 3 1490 360 103 0 0 chr9 118668950 118669008 -5407164 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1490 632 267 27 0 chr9 118669068 118669218 -5406954 - MTEa LTR MaLR -2 377 224 3 1490 235 226 0 19 chr9 118669949 118670003 -5406169 - L1MB8 LINE L1 -5 6173 6121 3 1490 926 269 126 39 chr9 118670017 118670350 -5405822 + ORR1D2 LTR MaLR 1 362 -8 3 1490 1255 268 13 79 chr9 118670359 118670516 -5405656 - MTEa LTR MaLR -12 367 229 3 1490 570 67 0 0 chr9 118670516 118670591 -5405581 + (TCC)n Simple_repeat Simple_repeat 2 76 0 3 1490 1255 268 13 79 chr9 118670591 118670826 -5405346 - MTEa LTR MaLR -151 228 1 3 1490 215 300 0 0 chr9 118670828 118670878 -5405294 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1490 327 336 94 7 chr9 118670888 118671026 -5405146 - L1MB7 LINE L1 -61 6123 5974 3 1490 321 47 0 0 chr9 118671690 118671733 -5404439 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1490 186 43 0 0 chr9 118672443 118672466 -5403706 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1490 23 54 0 0 chr9 118672694 118672731 -5403441 + AT_rich Low_complexity Low_complexity 1 37 0 3 1490 1518 107 57 4 chr9 118672731 118672976 -5403196 - Lx4A LINE L1 -1 7057 6800 3 1490 2172 88 7 0 chr9 118672976 118673281 -5402891 + Lx4A LINE L1 6524 6830 -228 3 1490 408 308 124 50 chr9 118673467 118673829 -5402343 + L2b LINE L2 2968 3356 -19 3 1490 254 297 110 0 chr9 118674023 118674114 -5402058 + PB1D10 SINE Alu 1 101 -16 3 1490 486 266 73 0 chr9 118674033 118674157 -5402015 + ID_B1 SINE B4 92 224 0 3 1490 384 22 0 0 chr9 118674758 118674803 -5401369 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1490 631 313 90 30 chr9 118674842 118675076 -5401096 - B4A SINE B4 -43 249 2 3 1490 398 268 25 51 chr9 118675172 118675290 -5400882 + B1F SINE Alu 18 132 -17 3 1490 1062 254 110 22 chr9 118677352 118677670 -5398502 + ORR1D1 LTR MaLR 23 368 -6 3 1490 586 274 32 27 chr9 118678368 118678558 -5397614 - MTE2a LTR MaLR 0 379 202 3 1490 198 0 0 0 chr9 118678561 118678583 -5397589 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1490 188 184 0 20 chr9 118678626 118678654 -5397518 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1490 450 0 0 0 chr9 118678654 118678704 -5397468 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1490 188 184 0 20 chr9 118678704 118678725 -5397447 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1490 1004 218 49 5 chr9 118678905 118679108 -5397064 + B3 SINE B2 1 212 -4 3 1490 423 0 0 0 chr9 118679111 118679158 -5397014 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1490 585 250 9 0 chr9 118679987 118680099 -5396073 - PB1D10 SINE Alu 0 117 5 3 1490 3086 65 39 0 chr9 118680128 118680513 -5395659 - MTA_Mm LTR MaLR 0 400 1 3 1490 7553 78 26 70 chr9 118680513 118681662 -5394510 - MTA_Mm-int LTR MaLR 0 1098 1 3 1490 3403 43 10 0 chr9 118681662 118682054 -5394118 - MTA_Mm LTR MaLR 0 396 1 3 1490 463 288 30 119 chr9 118682063 118682177 -5393995 + B3A SINE B2 57 168 -30 3 1490 210 71 0 0 chr9 118682177 118682205 -5393967 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1490 216 288 30 119 chr9 118682205 118682224 -5393948 + B2_Mm1t SINE B2 162 178 -15 3 1490 941 148 204 0 chr9 118682856 118683032 -5393140 + B3 SINE B2 4 215 -1 3 1490 22 0 0 0 chr9 118683034 118683056 -5393116 + AT_rich Low_complexity Low_complexity 1 22 0 3 1490 1163 88 0 0 chr9 118683056 118683204 -5392968 + B1_Mus1 SINE Alu 1 148 0 3 1490 306 0 0 0 chr9 118683330 118683364 -5392808 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1490 255 290 131 0 chr9 118683384 118683491 -5392681 + MER5A DNA MER1_type 62 182 -7 3 1490 205 383 105 29 chr9 118684309 118684586 -5391586 + L2b LINE L2 3036 3333 -42 3 1490 986 259 5 5 chr9 118684885 118685083 -5391089 + ID_B1 SINE B4 13 210 -14 3 1490 314 221 147 0 chr9 118685100 118685195 -5390977 + ID_B1 SINE B4 79 187 -37 3 1490 510 158 83 236 chr9 118685112 118685269 -5390903 + B1_Mur1 SINE Alu 14 146 -3 3 1490 447 62 0 0 chr9 118685405 118685448 -5390724 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 3 1490 1248 34 0 20 chr9 118685448 118685598 -5390574 - B1_Mus2 SINE Alu 0 147 1 3 1490 447 62 0 0 chr9 118685598 118685619 -5390553 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 3 1490 1498 195 129 31 chr9 118685724 118686074 -5390098 + ORR1C2 LTR MaLR 1 384 0 3 1490 31 0 0 0 chr9 118686784 118686815 -5389357 + AT_rich Low_complexity Low_complexity 1 31 0 3 1490 576 313 24 28 chr9 118686832 118687121 -5389051 + B4A SINE B4 3 290 -2 3 1490 387 0 0 0 chr9 118688041 118688084 -5388088 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1490 265 295 116 0 chr9 118688358 118688470 -5387702 - L1M3 LINE L1 -395 5794 5670 3 1490 497 297 117 29 chr9 118688547 118688969 -5387203 + L1M4c LINE L1 2365 2826 -3550 3 1490 579 212 81 1 chr9 118688973 118689099 -5387073 - ORR1D1 LTR MaLR 0 384 242 3 1490 216 111 0 0 chr9 118689099 118689135 -5387037 + (CAGG)n Simple_repeat Simple_repeat 1 36 0 3 1490 490 247 147 26 chr9 118689135 118689199 -5386973 - ORR1D1 LTR MaLR -136 258 182 3 1490 345 260 188 25 chr9 118689199 118689332 -5386840 - RLTR21 LTR ERVK 0 1572 1344 3 1490 5265 135 23 2 chr9 118689335 118690168 -5386004 - RMER12 LTR ERVK -469 853 4 3 1490 1102 183 27 100 chr9 118690172 118690433 -5385739 - ORR1D1 LTR MaLR -131 243 2 3 1490 558 242 74 62 chr9 118690433 118690675 -5385497 + L1M4c LINE L1 2828 3072 -3304 3 1490 332 317 152 62 chr9 118690811 118691087 -5385085 - MLT1G3 LTR MaLR -291 304 4 3 1490 232 302 201 19 chr9 118691382 118691591 -5384581 + L1M3 LINE L1 2223 2469 -3671 3 1490 282 331 20 48 chr9 118691652 118691798 -5384374 - Arthur1A DNA Tip100 -16 161 20 3 1490 369 243 28 37 chr9 118692855 118692962 -5383210 - B4A SINE B4 -186 106 1 3 1490 202 195 0 47 chr9 118694150 118694193 -5381979 + polypyrimidine Low_complexity Low_complexity 1 41 0 3 1490 313 265 104 11 chr9 118694194 118694299 -5381873 - B1F1 SINE Alu -2 115 3 3 1490 584 289 124 12 chr9 118694327 118694586 -5381586 - B4 SINE B4 -4 288 1 3 1490 432 0 0 0 chr9 118694711 118694759 -5381413 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1490 261 338 86 0 chr9 118695307 118695446 -5380726 + Lx9 LINE L1 7205 7355 -289 3 1490 240 86 0 0 chr9 118695497 118695532 -5380640 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1490 582 126 0 0 chr9 118695532 118695635 -5380537 + (GA)n Simple_repeat Simple_repeat 2 104 0 3 1490 544 334 62 52 chr9 118695643 118696066 -5380106 - MLT1H LTR MaLR -93 456 30 3 1490 549 173 15 73 chr9 118696148 118696285 -5379887 + ORR1A2 LTR MaLR 1 129 -198 3 1490 188 254 169 0 chr9 118696644 118696703 -5379469 - L2c LINE L2 -20 3367 3299 3 1490 531 273 65 26 chr9 118697478 118697573 -5378599 + B3A SINE B2 4 107 -91 3 1490 1145 56 0 7 chr9 118697573 118697711 -5378461 + B1_Mus2 SINE Alu 2 139 -8 3 1490 194 0 39 0 chr9 118697711 118697737 -5378435 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1490 531 273 65 26 chr9 118697737 118697799 -5378373 + B3A SINE B2 108 163 -35 3 1490 324 0 0 0 chr9 118697819 118697855 -5378317 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1490 306 278 0 100 chr9 118697894 118697994 -5378178 - RMER10B LTR ERVL -40 358 269 3 1490 400 224 92 25 chr9 118698385 118698504 -5377668 - PB1 SINE Alu 0 127 1 3 1490 660 164 26 8 chr9 118698914 118699031 -5377141 + PB1D9 SINE Alu 2 120 0 3 1490 205 167 0 0 chr9 118699305 118699335 -5376837 - L2c LINE L2 -20 3367 3338 3 1490 195 172 0 0 chr9 118699338 118699367 -5376805 - L2c LINE L2 -19 3368 3340 3 1490 1032 220 5 10 chr9 118699377 118699579 -5376593 + B3 SINE B2 16 216 0 3 1490 208 341 24 0 chr9 118699622 118699704 -5376468 + MIRc SINE MIR 84 167 -101 3 1490 697 212 0 35 chr9 118699743 118699885 -5376287 + B1_Mur2 SINE Alu 1 137 -12 3 1490 351 0 0 0 chr9 118699885 118699924 -5376248 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 3 1490 777 127 24 0 chr9 118702306 118702432 -5373740 + B1_Mur4 SINE Alu 7 135 -15 3 1490 311 276 0 29 chr9 118702570 118702745 -5373427 + CT-rich Low_complexity Low_complexity 2 171 0 3 1490 704 336 80 25 chr9 118702821 118703270 -5372902 + Charlie4a DNA MER1_type 29 502 -6 3 1490 1007 129 0 45 chr9 118704799 118704953 -5371219 + B1_Mus1 SINE Alu 2 148 0 4 1490 22 88 0 0 chr9 118705038 118705095 -5371077 + AT_rich Low_complexity Low_complexity 1 57 0 4 1490 997 215 118 82 chr9 118705099 118705517 -5370655 - MT2A LTR ERVL -47 554 1 4 1490 581 266 82 60 chr9 118705725 118705909 -5370263 + ORR1E LTR MaLR 3 190 -169 4 1490 872 236 11 37 chr9 118705911 118706100 -5370072 + B4 SINE B4 109 292 0 4 1490 312 292 274 4 chr9 118706433 118706667 -5369505 + LTR16C LTR ERVL 191 487 -2 4 1490 356 269 13 0 chr9 118706980 118707058 -5369114 - ID4_ SINE ID 0 83 5 4 1490 1410 58 0 0 chr9 118707071 118707330 -5368842 + (TG)n Simple_repeat Simple_repeat 1 259 0 4 1490 892 231 49 58 chr9 118707847 118708035 -5368137 + B3 SINE B2 13 199 -17 4 1490 194 344 75 15 chr9 118708499 118708632 -5367540 + MIR3 SINE MIR 25 165 -43 4 1490 457 260 132 24 chr9 118708918 118709131 -5367041 - Lx8 LINE L1 -213 7260 7025 4 1490 977 191 23 45 chr9 118709167 118709395 -5366777 + ORR1D1 LTR MaLR 1 234 -133 4 1490 234 0 0 0 chr9 118709409 118709435 -5366737 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1490 1176 136 55 10 chr9 118709435 118709455 -5366717 + ORR1D1 LTR MaLR 166 185 -189 4 1490 324 0 0 0 chr9 118709455 118709491 -5366681 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1490 1176 136 55 10 chr9 118709491 118709670 -5366502 + ORR1D1 LTR MaLR 186 374 0 4 1490 23 0 0 0 chr9 118709777 118709800 -5366372 + AT_rich Low_complexity Low_complexity 1 23 0 4 1490 266 338 66 24 chr9 118711773 118711985 -5364187 + L2a LINE L2 1704 1924 -1495 4 1490 812 291 112 87 chr9 118712841 118713277 -5362895 + RCHARR1 DNA MER1_type 5 451 -523 4 1490 624 253 29 0 chr9 118713507 118713681 -5362491 + RCHARR1 DNA MER1_type 756 934 -40 4 1490 3224 26 45 0 chr9 118713685 118714064 -5362108 + MTA_Mm LTR MaLR 1 396 0 4 1490 893 244 108 118 chr9 118714080 118714452 -5361720 + MTE2a LTR MaLR 12 379 0 4 1490 217 315 87 20 chr9 118714492 118714641 -5361531 + L2a LINE L2 2010 2168 -1251 4 1490 433 332 154 31 chr9 118714745 118715480 -5360692 + L2a LINE L2 2392 3210 -216 4 1490 731 254 190 3 chr9 118715621 118715935 -5360237 - MTE2a LTR MaLR 0 379 7 4 1490 369 239 281 24 chr9 118718260 118718427 -5357745 + B3 SINE B2 2 211 -5 4 1490 772 235 60 12 chr9 118718556 118718724 -5357448 + B3 SINE B2 1 176 -40 4 1490 342 0 0 0 chr9 118718736 118718774 -5357398 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1490 276 325 92 17 chr9 118719113 118719232 -5356940 - L2c LINE L2 -28 3359 3232 4 1490 518 324 44 112 chr9 118719827 118720192 -5355980 - ORR1E LTR MaLR -14 345 6 4 1490 1346 245 24 51 chr9 118720199 118720534 -5355638 + ORR1E LTR MaLR 34 359 0 4 1490 367 320 228 29 chr9 118720581 118720788 -5355384 - LTR16C LTR ERVL -2 487 213 4 1490 1484 123 18 0 chr9 118720788 118721007 -5355165 + URR1B DNA MER1_type 1 223 -2 4 1490 367 320 228 29 chr9 118721007 118721150 -5355022 - LTR16C LTR ERVL -277 212 67 4 1490 388 301 160 69 chr9 118721281 118721556 -5354616 - MER102b DNA MER1_type -28 313 14 4 1490 447 123 0 0 chr9 118721729 118721810 -5354362 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1490 444 275 11 11 chr9 118721840 118722020 -5354152 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1490 201 180 0 0 chr9 118722034 118722084 -5354088 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1490 628 241 75 7 chr9 118722505 118722651 -5353521 + Tigger5 DNA MER2_type 6 161 -2245 4 1490 234 233 0 0 chr9 118724414 118724457 -5351715 + polypurine Low_complexity Low_complexity 4 46 0 4 1490 543 261 6 73 chr9 118724536 118724701 -5351471 + RSINE1 SINE B4 11 164 -1 4 1490 200 111 0 27 chr9 118724702 118724739 -5351433 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1490 833 248 12 12 chr9 118724761 118724960 -5351212 + B3A SINE B2 14 193 -5 4 1490 1112 261 24 50 chr9 118725255 118725684 -5350488 + L1MA5A LINE L1 5509 5921 -1864 4 1490 333 118 0 0 chr9 118726168 118726219 -5349953 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1490 461 315 42 7 chr9 118726260 118726404 -5349768 - B4A SINE B4 -53 239 91 4 1490 324 0 0 0 chr9 118726685 118726721 -5349451 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1490 242 305 190 54 chr9 118727470 118727671 -5348501 - MIR SINE MIR -17 251 31 4 1490 516 242 33 50 chr9 118729460 118729608 -5346564 + MTC LTR MaLR 61 210 -209 4 1490 345 24 0 0 chr9 118729621 118729663 -5346509 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1490 904 200 99 5 chr9 118729771 118729962 -5346210 + MTC LTR MaLR 205 413 -8 4 1490 506 284 152 19 chr9 118731471 118731740 -5344432 + Lx8 LINE L1 7169 7473 0 4 1490 272 358 49 42 chr9 118732426 118732569 -5343603 + MIRb SINE MIR 30 173 -95 4 1490 1423 74 10 10 chr9 118732611 118732803 -5343369 + B2_Mm2 SINE B2 2 193 -2 4 1490 425 283 75 44 chr9 118733329 118733470 -5342702 + MTE2a LTR MaLR 57 194 -185 4 1490 183 42 0 0 chr9 118733470 118733494 -5342678 + (CATG)n Simple_repeat Simple_repeat 4 27 0 4 1490 425 283 75 44 chr9 118733494 118733511 -5342661 + MTE2a LTR MaLR 195 219 -160 4 1490 419 251 120 109 chr9 118733562 118733754 -5342418 + MTE2a LTR MaLR 177 370 -9 4 1490 186 291 0 68 chr9 118733760 118733819 -5342353 + MIRb SINE MIR 208 262 -6 4 1490 1029 265 108 28 chr9 118734482 118734870 -5341302 - MTD LTR MaLR 0 419 1 4 1490 275 75 29 43 chr9 118735302 118735372 -5340800 + (CAAAA)n Simple_repeat Simple_repeat 4 72 0 4 1490 342 0 0 0 chr9 118735860 118735898 -5340274 + (TTA)n Simple_repeat Simple_repeat 3 40 0 4 1490 568 228 186 16 chr9 118735904 118736087 -5340085 - B3 SINE B2 -2 214 1 4 1490 340 311 92 99 chr9 118736363 118736645 -5339527 + ORR1E LTR MaLR 67 346 -13 4 1490 935 128 26 0 chr9 118737412 118737717 -5338455 + (TGGA)n Simple_repeat Simple_repeat 1 313 0 4 1490 404 200 19 83 chr9 118738111 118738220 -5337952 + PB1D10 SINE Alu 24 125 -22 4 1490 315 282 73 81 chr9 118738768 118739015 -5337157 - L1MB7 LINE L1 -237 5947 5703 4 1490 198 118 0 0 chr9 118739112 118739146 -5337026 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 4 1490 1246 204 0 9 chr9 118740948 118741166 -5335006 + B3 SINE B2 1 216 0 4 1490 921 233 0 6 chr9 118741298 118741462 -5334710 - RSINE1 SINE B4 0 165 3 4 1490 258 286 0 72 chr9 118741573 118741656 -5334516 - MTEa LTR MaLR -294 85 9 4 1490 423 274 0 0 chr9 118742012 118742187 -5333985 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 1490 26 30 0 0 chr9 118742453 118742486 -5333686 + AT_rich Low_complexity Low_complexity 1 33 0 4 1490 373 267 74 62 chr9 118743654 118743830 -5332342 - MTEa LTR MaLR -3 376 199 4 1490 313 225 42 0 chr9 118743839 118743910 -5332262 - MTEa LTR MaLR -291 88 15 4 1490 226 302 0 20 chr9 118744510 118744535 -5331637 + (CATATA)n Simple_repeat Simple_repeat 1 24 0 4 1490 697 254 46 11 chr9 118744535 118744710 -5331462 + B3A SINE B2 2 182 -16 4 1490 455 220 19 4 chr9 118744710 118744974 -5331198 + (CA)n Simple_repeat Simple_repeat 1 268 0 4 1490 541 212 14 7 chr9 118744987 118745289 -5330883 + (CA)n Simple_repeat Simple_repeat 1 304 0 4 1490 303 148 0 18 chr9 118745309 118745364 -5330808 + HAL1-3A_ME LINE L1 1975 2028 -830 4 1490 215 197 0 15 chr9 118745368 118745414 -5330758 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1490 240 35 0 0 chr9 118745414 118745443 -5330729 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 1490 215 197 0 15 chr9 118745443 118745463 -5330709 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1490 375 341 179 3 chr9 118745469 118745760 -5330412 - L1MC4 LINE L1 -5 8037 7696 4 1490 455 297 69 96 chr9 118745796 118746057 -5330115 - MTD LTR MaLR -158 261 8 4 1490 361 282 38 68 chr9 118746406 118746539 -5329633 - MER5B DNA MER1_type -21 157 29 4 1490 2561 102 7 89 chr9 118747225 118747654 -5328518 - Lx2 LINE L1 0 6997 6604 4 1490 851 265 146 11 chr9 118749273 118749636 -5326536 + MTD LTR MaLR 4 415 -4 4 1490 446 309 50 55 chr9 118749867 118750066 -5326106 + LTR16C LTR ERVL 244 441 -48 4 1491 739 173 47 82 chr9 118751654 118751824 -5324348 - RSINE1 SINE B4 0 165 2 4 1491 397 201 440 11 chr9 118752128 118752319 -5323853 + B4A SINE B4 3 275 -17 4 1491 1140 153 94 0 chr9 118752904 118753106 -5323066 - URR1A DNA MER1_type -5 221 1 4 1491 303 343 76 14 chr9 118753589 118753734 -5322438 - MER58B DNA MER1_type -187 154 1 4 1491 419 176 11 0 chr9 118754691 118754782 -5321390 + (TGGA)n Simple_repeat Simple_repeat 4 95 0 4 1491 182 317 62 77 chr9 118754825 118754955 -5321217 - L4 LINE RTE -500 1529 1402 4 1491 414 0 0 0 chr9 118755046 118755092 -5321080 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1491 311 143 129 0 chr9 118755649 118755719 -5320453 - PB1D9 SINE Alu -1 119 41 4 1491 308 224 12 95 chr9 118755769 118755853 -5320319 - B1_Mus1 SINE Alu -51 97 21 4 1491 417 272 35 49 chr9 118756414 118756557 -5319615 + B1F SINE Alu 1 141 -8 4 1491 1787 320 81 40 chr9 118756746 118757476 -5318696 - Tigger1 DNA MER2_type -1 2417 1653 4 1491 1577 57 0 0 chr9 118757476 118757669 -5318503 + B2_Mm2 SINE B2 2 194 -1 4 1491 1787 320 81 40 chr9 118757669 118757753 -5318419 - Tigger1 DNA MER2_type -766 1652 1570 4 1491 970 316 40 35 chr9 118757783 118758154 -5318018 + MTE2a LTR MaLR 6 378 -1 4 1491 688 222 56 0 chr9 118758154 118758312 -5317860 - Tigger1 DNA MER2_type -900 1518 1352 4 1491 443 224 40 10 chr9 118758329 118758428 -5317744 - Tigger1 DNA MER2_type -1771 647 546 4 1491 436 278 55 66 chr9 118758426 118758607 -5317565 - Tigger1 DNA MER2_type -1051 1367 1189 4 1491 265 361 50 0 chr9 118760178 118760297 -5315875 + Charlie4z DNA MER1_type 43 167 0 4 1491 249 276 64 16 chr9 118760523 118760648 -5315524 + L2 LINE L2 2269 2399 -1020 4 1491 234 0 0 0 chr9 118760695 118760721 -5315451 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1491 710 167 5 0 chr9 118760886 118761109 -5315063 + (TG)n Simple_repeat Simple_repeat 1 224 0 4 1491 235 295 63 70 chr9 118761109 118761251 -5314921 - MLT1B LTR MaLR -195 195 55 4 1491 282 387 69 29 chr9 118761332 118761606 -5314566 + L2 LINE L2 2502 2786 -633 4 1491 669 63 0 0 chr9 118761969 118762064 -5314108 + (TG)n Simple_repeat Simple_repeat 2 96 0 4 1491 233 127 36 0 chr9 118762067 118762122 -5314050 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 4 1491 206 107 53 18 chr9 118763061 118763118 -5313054 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1491 1098 257 82 27 chr9 118763856 118764223 -5311949 - MTD LTR MaLR -14 405 2 4 1491 504 0 0 0 chr9 118764357 118764413 -5311759 + (GAA)n Simple_repeat Simple_repeat 1 56 0 4 1491 301 261 140 44 chr9 118764413 118764549 -5311623 + HAL1-3A_ME LINE L1 2284 2432 -426 4 1491 698 216 176 10 chr9 118764776 118765045 -5311127 - ORR1D2 LTR MaLR 0 370 9 5 1491 194 320 234 16 chr9 118766950 118767134 -5309038 - L3b LINE CR1 -147 335 112 5 1491 927 274 1 21 chr9 118767388 118767603 -5308569 + B4A SINE B4 82 292 0 5 1491 434 149 11 0 chr9 118767612 118767699 -5308473 + (CA)n Simple_repeat Simple_repeat 2 89 0 5 1491 834 242 129 55 chr9 118770974 118771245 -5304927 + B4A SINE B4 1 291 -1 5 1491 288 53 0 0 chr9 118771273 118771311 -5304861 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 5 1491 565 203 14 0 chr9 118772542 118772647 -5303525 + B1_Mur1 SINE Alu 35 150 0 5 1491 300 27 0 0 chr9 118773227 118773264 -5302908 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 5 1491 753 279 35 0 chr9 118773308 118773537 -5302635 + L1MA5 LINE L1 5791 6027 -273 5 1491 247 267 50 62 chr9 118773929 118774009 -5302163 + PB1D10 SINE Alu 1 79 -38 5 1491 1014 204 132 15 chr9 118774797 118775145 -5301027 - MTD LTR MaLR 0 419 5 5 1491 461 216 136 67 chr9 118775185 118775336 -5300836 + RSINE1 SINE B4 8 165 0 5 1491 195 299 16 42 chr9 118775385 118775456 -5300716 - MIR3 SINE MIR -103 173 109 5 1491 1056 107 0 0 chr9 118775518 118775658 -5300514 + B1_Mus2 SINE Alu 1 140 -7 5 1491 1039 292 24 34 chr9 118775676 118775970 -5300202 + B4 SINE B4 1 291 -1 5 1491 296 319 67 0 chr9 118776021 118776156 -5300016 + L1MA4 LINE L1 5742 5885 -415 5 1491 207 350 82 20 chr9 118776219 118776365 -5299807 + MIR3 SINE MIR 49 203 -5 5 1491 639 142 0 0 chr9 118776642 118776748 -5299424 + (TCC)n Simple_repeat Simple_repeat 2 107 0 5 1491 336 229 144 18 chr9 118778134 118778245 -5297927 + PB1 SINE Alu 1 125 -2 5 1491 513 0 0 0 chr9 118778348 118778405 -5297767 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1491 446 318 67 47 chr9 118778831 118779128 -5297044 + L1ME3 LINE L1 5581 5883 -279 5 1491 1287 223 57 76 chr9 118779481 118779492 -5296680 - MTE2a LTR MaLR -12 367 357 5 1491 339 25 0 0 chr9 118779492 118779532 -5296640 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 1491 1287 223 57 76 chr9 118779532 118779874 -5296298 - MTE2a LTR MaLR -23 356 21 5 1491 234 91 0 0 chr9 118780014 118780047 -5296125 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1491 245 256 139 13 chr9 118781358 118781437 -5294735 + B1_Mm SINE Alu 9 97 -50 5 1491 195 313 217 0 chr9 118781453 118781536 -5294636 - MER5A DNA MER1_type -78 111 11 5 1491 228 191 88 73 chr9 118781549 118781611 -5294561 - MER58A DNA MER1_type 0 224 163 5 1491 337 282 104 49 chr9 118781611 118781775 -5294397 + RMER30 DNA MER1_type 2 174 -28 5 1491 449 217 146 58 chr9 118781792 118781929 -5294243 - MER58A DNA MER1_type -74 150 2 5 1491 564 254 24 8 chr9 118783262 118783389 -5292783 + RSINE1 SINE B4 14 142 -23 5 1491 221 140 0 23 chr9 118783600 118783644 -5292528 + GA-rich Low_complexity Low_complexity 3 45 0 5 1491 1112 173 10 24 chr9 118783649 118783856 -5292316 + B3 SINE B2 1 204 -12 5 1491 1020 208 46 14 chr9 118784205 118784424 -5291748 + URR1A DNA MER1_type 1 226 0 5 1491 302 301 34 87 chr9 118784502 118784651 -5291521 - MLT1A1 LTR MaLR 0 408 268 5 1491 662 254 70 15 chr9 118784709 118784909 -5291263 - RMER15 LTR ERVL -2 573 363 5 1491 276 30 0 0 chr9 118787077 118787110 -5289062 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1491 666 269 6 34 chr9 118787256 118787433 -5288739 + B4A SINE B4 30 201 -91 5 1491 195 69 0 0 chr9 118788038 118788067 -5288105 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1491 1625 203 65 17 chr9 118788823 118789178 -5286994 - ORR1D1 LTR MaLR -2 372 1 5 1491 370 245 290 4 chr9 118789407 118789645 -5286527 + MER44A DNA MER2_type 2 307 -32 5 1491 1233 238 185 11 chr9 118789823 118790180 -5285992 + MTD LTR MaLR 1 419 0 5 1491 708 268 82 0 chr9 118790206 118790389 -5285783 - B3A SINE B2 0 198 1 5 1491 255 312 65 0 chr9 118791168 118791245 -5284927 + B4 SINE B4 65 146 -146 5 1491 398 183 189 21 chr9 118791190 118791285 -5284887 + PB1D10 SINE Alu 7 117 0 5 1491 180 0 0 0 chr9 118791628 118791648 -5284524 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1491 200 274 0 0 chr9 118791708 118791759 -5284413 - L2b LINE L2 -24 3351 3301 5 1491 231 318 0 0 chr9 118792553 118792616 -5283556 + ID4_ SINE ID 9 71 -12 5 1491 1006 243 10 10 chr9 118792998 118793206 -5282966 + B3 SINE B2 9 216 0 5 1491 474 265 0 89 chr9 118793226 118793350 -5282822 + PB1D7 SINE Alu 2 114 -6 5 1491 960 122 7 20 chr9 118793462 118793612 -5282560 - B1_Mur3 SINE Alu -1 148 1 5 1491 216 97 0 0 chr9 118794085 118794116 -5282056 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1491 674 259 0 14 chr9 118794123 118794264 -5281908 - RSINE1 SINE B4 -24 141 3 5 1491 355 348 76 0 chr9 118795763 118795881 -5280291 - MER63A DNA AcHobo -80 130 4 5 1491 862 204 61 56 chr9 118795916 118796113 -5280059 + B3A SINE B2 1 198 0 5 1491 1587 195 33 21 chr9 118796141 118796556 -5279616 - ORR1B2 LTR MaLR 0 367 1 5 1491 281 319 171 14 chr9 118797910 118798050 -5278122 - RSINE1 SINE B4 -2 163 2 5 1491 651 112 364 0 chr9 118798075 118798218 -5277954 - B2_Mm2 SINE B2 0 195 1 5 1491 1584 42 5 0 chr9 118798237 118798426 -5277746 - B2_Mm1t SINE B2 -2 191 2 5 1491 826 177 19 23 chr9 118798434 118798618 -5277554 - B3 SINE B2 -2 193 12 5 1491 511 274 69 40 chr9 118798619 118798794 -5277378 - B4 SINE B4 -59 233 54 5 1491 276 269 0 0 chr9 118799500 118799552 -5276620 + RSINE1 SINE B4 108 159 -6 5 1491 379 215 191 11 chr9 118800188 118800282 -5275890 - RSINE1 SINE B4 -42 123 13 5 1491 615 192 23 11 chr9 118801276 118801450 -5274722 + CT-rich Low_complexity Low_complexity 4 179 0 5 1491 203 245 0 0 chr9 118801950 118802003 -5274169 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1491 292 323 65 0 chr9 118802882 118803037 -5273135 + L1MA9 LINE L1 6103 6267 -45 5 1491 587 194 18 44 chr9 118803236 118803349 -5272823 + B1_Mur1 SINE Alu 32 141 -8 5 1491 281 319 43 26 chr9 118803358 118803474 -5272698 - RMER12 LTR ERVK -471 851 734 5 1491 1293 97 11 0 chr9 118803761 118803937 -5272235 + B2_Mm1t SINE B2 2 179 -14 5 1491 390 132 172 9 chr9 118803950 118804054 -5272118 + B2_Mm2 SINE B2 47 187 -6 5 1491 243 125 0 0 chr9 118804184 118804224 -5271948 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 5 1491 351 0 0 0 chr9 118804226 118804265 -5271907 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1491 267 245 0 0 chr9 118804383 118804436 -5271736 - Zaphod2 DNA Tip100 -3318 206 154 5 1491 271 173 0 37 chr9 118804775 118804829 -5271343 + B3 SINE B2 155 206 -10 5 1491 517 281 0 55 chr9 118804846 118804974 -5271198 - MTE2a LTR MaLR -258 121 1 5 1491 928 257 115 0 chr9 118805337 118805598 -5270574 + B4 SINE B4 2 292 0 5 1491 421 209 11 43 chr9 118805614 118805799 -5270373 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 5 1491 308 272 62 52 chr9 118805816 118805913 -5270259 + L1MC4a LINE L1 6582 6679 -1203 5 1491 231 204 0 0 chr9 118805913 118805962 -5270210 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 5 1491 440 360 7 0 chr9 118807501 118807651 -5268521 - LTR16A1 LTR ERVL 0 456 306 5 1491 369 0 0 0 chr9 118809921 118809962 -5266210 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1491 362 289 103 26 chr9 118810413 118810530 -5265642 - B1_Mm SINE Alu -23 126 1 5 1491 624 14 0 0 chr9 118810915 118810988 -5265184 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 1491 414 0 0 0 chr9 118810988 118811033 -5265139 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1491 252 275 12 0 chr9 118811139 118811219 -5264953 - L1MEd LINE L1 -5448 671 591 5 1491 225 0 0 0 chr9 118811448 118811473 -5264699 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 5 1491 254 296 91 0 chr9 118811479 118811567 -5264605 - PB1D10 SINE Alu -18 99 4 5 1491 258 255 80 18 chr9 118811675 118811787 -5264385 - L1ME2z LINE L1 -23 6421 6303 5 1491 21 0 0 0 chr9 118811948 118811969 -5264203 + AT_rich Low_complexity Low_complexity 1 21 0 5 1491 225 333 74 0 chr9 118812165 118812273 -5263899 - L1MEd LINE L1 -5487 632 517 5 1491 559 259 28 7 chr9 118812698 118812842 -5263330 - RSINE1 SINE B4 -16 149 3 5 1491 509 259 76 0 chr9 118812909 118813040 -5263132 + B3A SINE B2 1 141 -57 5 1491 516 59 0 0 chr9 118813042 118813110 -5263062 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1491 359 254 0 0 chr9 118813111 118813182 -5262990 + B1F1 SINE Alu 23 93 -56 5 1491 204 135 0 0 chr9 118813185 118813222 -5262950 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1491 1327 250 64 14 chr9 118814038 118814399 -5261773 - MTEa LTR MaLR 0 379 1 5 1491 300 282 89 0 chr9 118814568 118814692 -5261480 + HAL1 LINE L1 2037 2171 -336 5 1491 576 226 0 0 chr9 118814742 118814848 -5261324 + B1_Mur1 SINE Alu 36 141 -8 5 1491 1120 95 13 6 chr9 118814932 118815091 -5261081 + B2_Mm2 SINE B2 2 161 -34 5 1491 300 53 0 0 chr9 118815096 118815134 -5261038 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 1491 446 266 25 58 chr9 118815212 118815332 -5260840 + PB1D10 SINE Alu 1 116 -1 5 1491 613 222 118 77 chr9 118815356 118815551 -5260621 + B3 SINE B2 2 204 -12 5 1491 289 356 0 0 chr9 118815566 118815653 -5260519 + ID_B1 SINE B4 93 179 -45 5 1491 444 104 0 0 chr9 118815658 118815725 -5260447 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1491 556 244 245 12 chr9 118816476 118816725 -5259447 + RMER20B LTR ERVK 234 540 -87 6 1491 768 186 131 46 chr9 118818140 118818315 -5257857 - B4 SINE B4 0 292 103 6 1491 451 253 109 69 chr9 118818318 118818336 -5257836 - B3A SINE B2 -16 182 165 6 1491 1128 89 0 16 chr9 118818336 118818519 -5257653 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1491 451 253 109 69 chr9 118818519 118818674 -5257498 - B3A SINE B2 -34 164 3 6 1491 590 153 9 0 chr9 118818805 118818916 -5257256 + GA-rich Low_complexity Low_complexity 2 113 0 6 1491 184 348 11 22 chr9 118819768 118819859 -5256313 - L2a LINE L2 0 3426 3337 6 1491 245 260 0 0 chr9 118819938 118819988 -5256184 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1491 228 350 54 36 chr9 118820107 118820273 -5255899 + Tigger7 DNA MER2_type 2052 2220 -271 6 1491 190 118 94 31 chr9 118820279 118820375 -5255797 + (CACAT)n Simple_repeat Simple_repeat 3 104 0 6 1491 419 336 8 0 chr9 118820429 118820557 -5255615 - B4A SINE B4 -163 129 1 6 1491 1030 181 15 36 chr9 118820996 118821191 -5254981 + B3 SINE B2 1 191 -25 6 1491 868 174 0 0 chr9 118821224 118821356 -5254816 + B1_Mur1 SINE Alu 1 132 -17 6 1491 213 94 0 0 chr9 118821374 118821406 -5254766 + (ATGGTG)n Simple_repeat Simple_repeat 4 35 0 6 1491 514 294 13 32 chr9 118821414 118821566 -5254606 + B4A SINE B4 1 149 -143 6 1491 679 223 0 8 chr9 118821566 118821697 -5254475 + RSINE1 SINE B4 2 131 -34 6 1491 234 105 0 0 chr9 118821697 118821735 -5254437 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1491 30 0 0 0 chr9 118821735 118821765 -5254407 + AT_rich Low_complexity Low_complexity 1 30 0 6 1491 1187 88 0 0 chr9 118821766 118821913 -5254259 + B1_Mus2 SINE Alu 1 147 0 6 1491 410 345 101 9 chr9 118821952 118822268 -5253904 + L1MC4 LINE L1 7334 7678 -364 6 1491 305 272 37 12 chr9 118822442 118822524 -5253648 + L1MC4 LINE L1 7769 7852 -30 6 1491 470 298 7 30 chr9 118822538 118822673 -5253499 + ID_B1 SINE B4 8 139 -85 6 1491 268 276 0 0 chr9 118822622 118822680 -5253492 + PB1D10 SINE Alu 8 65 -52 6 1491 1652 90 123 46 chr9 118822680 118823005 -5253167 + Lx LINE L1 6305 6654 0 6 1491 198 0 0 0 chr9 118823178 118823200 -5252972 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1491 309 256 12 71 chr9 118823200 118823284 -5252888 + PB1D7 SINE Alu 42 120 0 6 1491 207 69 0 0 chr9 118824456 118824485 -5251687 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1491 210 71 0 0 chr9 118824494 118824522 -5251650 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1491 893 242 21 0 chr9 118824522 118824712 -5251460 - B3 SINE B2 -13 203 10 6 1491 274 267 17 0 chr9 118824752 118824812 -5251360 - B1_Mur2 SINE Alu -10 139 79 6 1491 899 147 0 0 chr9 118824813 118824942 -5251230 + B1_Mus1 SINE Alu 2 130 -18 6 1491 429 70 0 0 chr9 118824942 118824999 -5251173 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1491 221 230 122 0 chr9 118825271 118825345 -5250827 + MIRb SINE MIR 65 147 -121 6 1491 554 226 294 12 chr9 118825359 118825529 -5250643 + ID_B1 SINE B4 4 221 -3 6 1491 705 245 4 154 chr9 118825532 118825711 -5250461 + B4A SINE B4 28 178 -114 6 1491 700 189 55 0 chr9 118825711 118825838 -5250334 + B1_Mur4 SINE Alu 4 137 -13 6 1491 243 0 0 0 chr9 118825841 118825868 -5250304 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1491 705 245 4 154 chr9 118825868 118825911 -5250261 + B4A SINE B4 179 220 -72 6 1491 1234 61 0 0 chr9 118825922 118826069 -5250103 + B1_Mm SINE Alu 1 147 0 6 1491 317 86 17 0 chr9 118826072 118826130 -5250042 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1491 457 309 71 5 chr9 118826887 118827109 -5249063 - MER74A LTR ERVL -371 251 22 6 1491 909 214 5 90 chr9 118827240 118827451 -5248721 - B3 SINE B2 -12 204 12 6 1491 725 152 6 0 chr9 118827550 118827721 -5248451 + CT-rich Low_complexity Low_complexity 2 173 0 6 1491 251 67 44 0 chr9 118827738 118827783 -5248389 + (TCTCTG)n Simple_repeat Simple_repeat 4 50 0 6 1491 929 148 0 26 chr9 118828178 118828331 -5247841 + B1_Mur4 SINE Alu 2 150 0 6 1491 972 128 77 16 chr9 118830534 118830717 -5245455 + B3 SINE B2 23 216 0 6 1491 477 0 0 0 chr9 118831330 118831383 -5244789 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1491 342 0 0 0 chr9 118832036 118832074 -5244098 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1491 710 218 15 0 chr9 118832173 118832306 -5243866 + B1_Mur1 SINE Alu 13 147 -2 6 1491 620 102 0 10 chr9 118832319 118832418 -5243754 + (GAGAA)n Simple_repeat Simple_repeat 3 100 0 6 1491 24 0 0 0 chr9 118832771 118832795 -5243377 + AT_rich Low_complexity Low_complexity 1 24 0 6 1491 423 0 0 0 chr9 118833070 118833117 -5243055 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1491 279 0 0 0 chr9 118833117 118833148 -5243024 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1491 720 263 324 17 chr9 118833155 118833575 -5242597 + Lx8 LINE L1 6910 7457 -16 6 1491 22 35 0 0 chr9 118834623 118834652 -5241520 + GC_rich Low_complexity Low_complexity 1 29 0 6 1491 33 43 0 0 chr9 118835505 118835552 -5240620 + GC_rich Low_complexity Low_complexity 1 47 0 6 1491 216 222 0 0 chr9 118835580 118835652 -5240520 + CT-rich Low_complexity Low_complexity 4 75 0 6 1491 24 67 0 0 chr9 118835792 118835837 -5240335 + GC_rich Low_complexity Low_complexity 1 45 0 6 1491 240 205 24 24 chr9 118835846 118835931 -5240241 + (CCGCG)n Simple_repeat Simple_repeat 3 87 0 6 1491 31 26 0 0 chr9 118835937 118835975 -5240197 + GC_rich Low_complexity Low_complexity 1 38 0 6 1491 200 146 49 0 chr9 118836766 118836807 -5239365 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1491 1163 158 63 10 chr9 118839196 118839401 -5236771 - B3 SINE B2 0 216 1 6 1491 326 284 5 75 chr9 118839638 118839832 -5236340 - MLT1L LTR MaLR -331 279 33 6 1491 30 0 0 0 chr9 118840517 118840547 -5235625 + AT_rich Low_complexity Low_complexity 1 30 0 6 1491 23 0 0 0 chr9 118840646 118840669 -5235503 + AT_rich Low_complexity Low_complexity 1 23 0 6 1491 752 251 67 0 chr9 118840676 118840871 -5235301 - B3 SINE B2 -6 210 3 6 1491 416 165 64 0 chr9 118840962 118841059 -5235113 - B1_Mus2 SINE Alu -16 104 1 6 1491 255 229 67 67 chr9 118840981 118841070 -5235102 - MT2B LTR ERVL -361 240 152 6 1491 440 287 39 88 chr9 118841256 118841539 -5234633 - L1MD1 LINE L1 -213 6420 6152 6 1491 328 305 127 35 chr9 118841518 118841746 -5234426 - L1MC3 LINE L1 -1945 5840 5592 6 1491 335 306 50 43 chr9 118841977 118842117 -5234055 - L1MD1 LINE L1 -663 5970 5830 6 1491 627 266 128 20 chr9 118842143 118842339 -5233833 - B4A SINE B4 -75 217 1 6 1491 320 270 22 11 chr9 118842507 118842597 -5233575 + B4A SINE B4 3 93 -199 6 1491 394 273 105 52 chr9 118842700 118842967 -5233205 - L1MD1 LINE L1 -1774 4763 4483 6 1491 1181 279 78 7 chr9 118842987 118843335 -5232837 - ORR1D2 LTR MaLR 0 421 1 6 1491 332 303 173 11 chr9 118843337 118843614 -5232558 - L1MD1 LINE L1 -2069 4468 4147 6 1491 351 283 179 34 chr9 118843726 118844154 -5232018 - L1MD1 LINE L1 -2600 3937 3442 6 1491 219 69 0 0 chr9 118844154 118844183 -5231989 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1491 351 283 179 34 chr9 118844183 118844291 -5231881 - L1MD1 LINE L1 -3096 3441 3323 6 1491 725 295 88 28 chr9 118844365 118844752 -5231420 - L1MC1 LINE L1 -104 6229 5820 6 1491 645 275 64 6 chr9 118844762 118844934 -5231238 + B3A SINE B2 1 182 -16 6 1491 868 278 85 15 chr9 118844960 118845230 -5230942 - B4 SINE B4 -3 289 1 6 1491 448 273 106 39 chr9 118845238 118845493 -5230679 - L1MC1 LINE L1 -509 5824 5553 6 1491 503 187 91 28 chr9 118845494 118845637 -5230535 - L1MD1 LINE L1 -4906 1727 1576 6 1491 964 222 6 216 chr9 118845674 118845892 -5230280 - B3 SINE B2 -3 213 22 6 1491 236 230 130 17 chr9 118845923 118846038 -5230134 - L1MD1 LINE L1 -5152 1481 1354 6 1491 261 0 0 0 chr9 118846058 118846087 -5230085 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1491 588 341 88 19 chr9 118846087 118846350 -5229822 - B4A SINE B4 -11 281 1 6 1491 653 301 11 45 chr9 118846390 118846658 -5229514 - L1MD1 LINE L1 -5362 1271 1013 6 1491 358 302 144 11 chr9 118846725 118846906 -5229266 - L1MD1 LINE L1 -5760 873 669 6 1491 487 134 0 72 chr9 118847053 118847155 -5229017 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1491 369 0 0 0 chr9 118847155 118847196 -5228976 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1491 487 121 0 52 chr9 118847196 118847328 -5228844 + (TG)n Simple_repeat Simple_repeat 1 125 0 6 1491 349 246 148 43 chr9 118847447 118847562 -5228610 - PB1D10 SINE Alu -21 128 2 6 1491 383 264 18 1 chr9 118847621 118847715 -5228457 + RSINE1 SINE B4 2 99 -193 6 1491 959 150 7 7 chr9 118847851 118847999 -5228173 + B1_Mur2 SINE Alu 1 148 -1 6 1491 1263 41 0 0 chr9 118848184 118848331 -5227841 + B1_Mus1 SINE Alu 2 148 0 6 1491 234 0 0 0 chr9 118848334 118848360 -5227812 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1491 216 0 0 0 chr9 118849035 118849059 -5227113 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 6 1491 557 295 183 13 chr9 118849074 118849304 -5226868 + B4A SINE B4 14 282 -10 6 1491 450 94 0 0 chr9 118850193 118850257 -5225915 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1491 577 289 85 7 chr9 118850257 118850410 -5225762 - B4 SINE B4 -22 270 106 6 1491 387 255 18 45 chr9 118850534 118850645 -5225527 - PB1D10 SINE Alu -6 111 4 6 1491 228 349 15 0 chr9 118850971 118851037 -5225135 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 6 1491 360 251 110 12 chr9 118851289 118851455 -5224717 + B3 SINE B2 1 216 0 6 1491 417 311 58 49 chr9 118851457 118851680 -5224492 - L1MB3 LINE L1 -10 6173 5949 6 1491 189 74 0 0 chr9 118852057 118852084 -5224088 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 6 1491 264 277 87 19 chr9 118852097 118852200 -5223972 - PB1D7 SINE Alu -10 110 1 6 1491 412 133 0 6 chr9 118852212 118852283 -5223889 - B1_Mus1 SINE Alu -82 68 1 6 1491 1245 111 26 5 chr9 118852282 118852472 -5223700 - B2_Mm2 SINE B2 0 195 2 6 1491 212 297 139 0 chr9 118852598 118852699 -5223473 - PB1D10 SINE Alu -2 115 1 6 1491 261 376 13 39 chr9 118852699 118852780 -5223392 - ID SINE ID -147 77 1 6 1491 645 269 58 0 chr9 118853050 118853206 -5222966 - RSINE1 SINE B4 0 165 1 6 1491 269 265 207 8 chr9 118853307 118853436 -5222736 - MIR SINE MIR -69 199 36 7 1491 346 246 150 2 chr9 118853869 118853967 -5222205 + B4A SINE B4 175 284 -8 7 1491 293 0 0 26 chr9 118853973 118854011 -5222161 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1491 2586 63 63 0 chr9 118854032 118854379 -5221793 - L1Md_F2 LINE L1 -1 6581 6213 7 1491 386 207 16 101 chr9 118854493 118854507 -5221665 - PB1D9 SINE Alu 0 120 108 7 1491 279 0 0 0 chr9 118854507 118854538 -5221634 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 7 1491 386 207 16 101 chr9 118854538 118854652 -5221520 - PB1D9 SINE Alu -13 107 4 7 1491 255 61 0 0 chr9 118855000 118855033 -5221139 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 7 1491 225 200 0 20 chr9 118855074 118855125 -5221047 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1491 588 50 0 0 chr9 118855125 118855205 -5220967 + (CAGAGA)n Simple_repeat Simple_repeat 2 81 0 7 1491 408 296 26 9 chr9 118855341 118855457 -5220715 - B4A SINE B4 -173 119 2 7 1491 3638 52 20 34 chr9 118855481 118855975 -5220197 - L1_Mus3 LINE L1 -7 6631 6145 7 1491 552 68 0 0 chr9 118856373 118856446 -5219726 + (T)n Simple_repeat Simple_repeat 1 73 0 7 1491 1193 107 6 0 chr9 118856740 118856908 -5219264 - URR1A DNA MER1_type 0 226 58 7 1491 1200 50 0 0 chr9 118857049 118857190 -5218982 - B1_Mus1 SINE Alu -6 142 2 7 1491 366 304 35 9 chr9 118857247 118857360 -5218812 + B4A SINE B4 177 292 0 7 1491 275 214 131 41 chr9 118857416 118857538 -5218634 + L1M5 LINE L1 3578 3710 -2436 7 1491 258 32 0 0 chr9 118857610 118857641 -5218531 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1491 1303 231 45 22 chr9 118857941 118858284 -5217888 - MTD LTR MaLR -13 394 18 7 1491 214 312 31 15 chr9 118858706 118858771 -5217401 - L2 LINE L2 -1894 1525 1460 7 1491 435 284 13 66 chr9 118860440 118860591 -5215581 - B4A SINE B4 -149 143 1 7 1491 423 0 0 0 chr9 118860931 118860978 -5215194 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1491 351 0 0 0 chr9 118860978 118861016 -5215156 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 1491 224 271 23 23 chr9 118861155 118861242 -5214930 + MIR SINE MIR 102 188 -74 7 1491 377 257 26 34 chr9 118861898 118862015 -5214157 + MTD LTR MaLR 5 120 -299 7 1491 1096 197 51 13 chr9 118862188 118862425 -5213747 + MTD LTR MaLR 174 419 0 7 1491 313 240 53 13 chr9 118862454 118862530 -5213642 + B4 SINE B4 1 79 -213 7 1491 211 239 29 29 chr9 118862634 118862703 -5213469 + RSINE1 SINE B4 94 162 -3 7 1491 276 267 33 139 chr9 118863411 118863533 -5212639 + PB1D10 SINE Alu 1 109 -8 7 1491 304 288 96 0 chr9 118863606 118863752 -5212420 - RSINE1 SINE B4 -4 161 2 7 1491 613 267 78 31 chr9 118864052 118864245 -5211927 + B4A SINE B4 90 291 -1 7 1491 423 0 0 0 chr9 118864284 118864331 -5211841 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1491 432 0 0 0 chr9 118864331 118864378 -5211794 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1491 833 114 42 28 chr9 118864512 118864641 -5211531 + B1_Mur4 SINE Alu 5 137 -13 7 1491 759 69 0 0 chr9 118864641 118864743 -5211429 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 7 1491 702 0 0 0 chr9 118864743 118864821 -5211351 + (GGGA)n Simple_repeat Simple_repeat 1 78 0 7 1491 833 114 42 28 chr9 118864821 118864834 -5211338 + B1_Mur4 SINE Alu 138 149 -1 7 1491 743 220 154 11 chr9 118864838 118865026 -5211146 + B3 SINE B2 2 216 0 7 1491 221 339 31 24 chr9 118865076 118865203 -5210969 - B1_Mm SINE Alu -17 130 3 7 1491 370 312 9 9 chr9 118865103 118865216 -5210956 - ID_B1 SINE B4 -42 182 70 7 1491 1179 178 9 18 chr9 118865296 118865514 -5210658 + B3 SINE B2 1 216 0 7 1491 354 314 129 62 chr9 118865553 118865862 -5210310 - ORR1D2 LTR MaLR -6 364 35 7 1491 328 353 119 23 chr9 118865871 118866048 -5210124 + HAL1 LINE L1 1451 1644 -863 7 1491 1209 260 112 20 chr9 118866357 118866840 -5209332 + Lx7 LINE L1 6804 7334 -362 7 1491 3289 55 2 2 chr9 118866840 118867240 -5208932 - MTB LTR MaLR 0 400 1 7 1491 1209 260 112 20 chr9 118867240 118867254 -5208918 + Lx7 LINE L1 7335 7347 -349 7 1491 575 131 0 23 chr9 118867254 118867340 -5208832 - B1_Mur4 SINE Alu -66 84 1 7 1491 242 223 63 11 chr9 118867340 118867369 -5208803 - ORR1D2-int LTR MaLR -863 646 613 7 1491 203 125 25 0 chr9 118867370 118867410 -5208762 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 7 1491 656 258 25 12 chr9 118867420 118867581 -5208591 + RSINE1 SINE B4 2 164 -1 7 1491 599 222 296 0 chr9 118867619 118867781 -5208391 + B3 SINE B2 2 211 -5 7 1491 351 0 0 0 chr9 118868818 118868857 -5207315 + (T)n Simple_repeat Simple_repeat 1 39 0 7 1491 308 264 7 7 chr9 118868922 118869003 -5207169 + B1F SINE Alu 3 83 -34 7 1491 711 254 104 5 chr9 118869033 118869235 -5206937 - B4A SINE B4 -69 223 2 7 1491 1052 218 90 56 chr9 118870517 118870697 -5205475 + B4A SINE B4 3 182 -110 7 1491 3348 52 12 2 chr9 118870697 118871099 -5205073 - MTB_Mm LTR MaLR -1 406 1 7 1491 1052 218 90 56 chr9 118871099 118871185 -5204987 + B4A SINE B4 183 278 -14 7 1491 204 97 0 0 chr9 118871220 118871251 -5204921 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1491 614 232 0 0 chr9 118871289 118871401 -5204771 + ID_B1 SINE B4 92 203 -21 7 1491 189 0 0 0 chr9 118871641 118871662 -5204510 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1491 507 218 64 0 chr9 118871853 118871967 -5204205 - PB1D9 SINE Alu -28 121 6 7 1491 385 300 18 18 chr9 118871888 118872000 -5204172 - B4 SINE B4 -123 169 58 7 1491 497 292 82 43 chr9 118872146 118872549 -5203623 - L1MEa LINE L1 -5471 729 333 7 1491 313 317 52 52 chr9 118872599 118872792 -5203380 - L1MEa LINE L1 -5841 253 61 7 1491 257 282 83 49 chr9 118872851 118872907 -5203265 + L1ME2z LINE L1 6078 6136 -308 7 1491 562 327 78 8 chr9 118872907 118873163 -5203009 + B4A SINE B4 1 274 -18 7 1491 257 282 83 49 chr9 118873163 118873179 -5202993 + L1ME2z LINE L1 6137 6154 -290 7 1491 414 57 0 0 chr9 118873179 118873232 -5202940 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1491 257 282 83 49 chr9 118873232 118873363 -5202809 + L1ME2z LINE L1 6155 6288 -156 7 1491 1366 85 5 21 chr9 118874393 118874585 -5201587 - B2_Mm2 SINE B2 -6 189 1 7 1491 879 185 63 11 chr9 118874650 118874841 -5201331 + B3 SINE B2 3 203 -13 7 1491 1925 174 30 24 chr9 118875071 118875220 -5200952 + ORR1D1 LTR MaLR 1 145 -229 7 1491 1344 69 21 16 chr9 118875220 118875411 -5200761 + B2_Mm2 SINE B2 1 192 -3 7 1491 1925 174 30 24 chr9 118875411 118875632 -5200540 + ORR1D1 LTR MaLR 146 373 -1 7 1491 203 264 170 85 chr9 118876404 118876545 -5199627 - L2b LINE L2 -1 3374 3222 7 1491 727 245 12 12 chr9 118876550 118876711 -5199461 + RSINE1 SINE B4 3 163 -2 7 1491 1276 213 59 116 chr9 118876794 118877182 -5198990 - MTE2a LTR MaLR 0 379 14 7 1491 300 358 35 35 chr9 118877547 118877744 -5198428 - L2 LINE L2 -951 2468 2272 7 1491 404 272 3 5 chr9 118878167 118878274 -5197898 + MIRc SINE MIR 63 170 -106 7 1491 466 260 124 28 chr9 118878344 118878522 -5197650 + B3A SINE B2 1 195 -3 7 1491 180 0 0 0 chr9 118878548 118878568 -5197604 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 7 1491 750 284 16 0 chr9 118879004 118879187 -5196985 - B3 SINE B2 -21 195 10 7 1491 306 342 114 30 chr9 118879227 118879393 -5196779 - ORR1E LTR MaLR -66 293 114 7 1491 642 297 114 28 chr9 118880852 118881247 -5194925 + L1MA4 LINE L1 5503 5931 -369 7 1491 980 228 173 22 chr9 118881313 118881636 -5194536 + MTE2b LTR MaLR 6 377 -2 7 1492 995 231 70 12 chr9 118882713 118882971 -5193201 - B4A SINE B4 -19 273 1 7 1492 963 292 27 15 chr9 118883253 118883535 -5192637 - B4 SINE B4 -3 289 3 7 1492 309 347 53 26 chr9 118883655 118883806 -5192366 - HAL1-3A_ME LINE L1 -420 2438 2284 7 1492 299 309 177 21 chr9 118884967 118885159 -5191013 + LTR33 LTR ERVL 1 222 -293 7 1492 288 265 38 38 chr9 118885252 118885358 -5190814 + LTR33 LTR ERVL 408 513 -2 7 1492 1229 255 27 98 chr9 118886435 118886843 -5189329 - MTE2a LTR MaLR 0 379 1 7 1492 231 264 0 14 chr9 118887616 118887689 -5188483 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1492 578 300 47 81 chr9 118887693 118887990 -5188182 - B4A SINE B4 -4 288 2 7 1492 1090 221 19 9 chr9 118888054 118888264 -5187908 + B3 SINE B2 1 212 -4 7 1492 405 226 16 108 chr9 118888577 118888706 -5187466 + B1_Mur1 SINE Alu 33 149 0 7 1492 756 154 45 23 chr9 118888771 118888904 -5187268 + B1_Mur3 SINE Alu 1 136 -13 7 1492 332 294 118 8 chr9 118889055 118889182 -5186990 - B1F SINE Alu -3 146 6 7 1492 316 331 32 70 chr9 118890047 118890203 -5185969 + MIR SINE MIR 44 193 -75 7 1492 1427 255 86 43 chr9 118890963 118891034 -5185138 - Lx8 LINE L1 -39 7434 7355 7 1492 426 20 0 0 chr9 118891034 118891085 -5185087 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7 1492 474 241 0 26 chr9 118891085 118891200 -5184972 - PB1D9 SINE Alu -8 112 1 7 1492 1427 255 86 43 chr9 118891200 118891688 -5184484 - Lx8 LINE L1 -119 7354 6851 7 1492 216 0 0 0 chr9 118891952 118891976 -5184196 + (CACG)n Simple_repeat Simple_repeat 2 25 0 7 1492 217 302 16 0 chr9 118892711 118892774 -5183398 + L3 LINE CR1 893 956 -3533 7 1492 576 248 26 40 chr9 118892793 118892944 -5183228 + ID_B1 SINE B4 76 224 0 7 1492 23 0 0 0 chr9 118892953 118892976 -5183196 + AT_rich Low_complexity Low_complexity 1 23 0 7 1492 516 206 58 10 chr9 118893023 118893126 -5183046 - B1_Mur1 SINE Alu -5 144 37 7 1492 305 298 98 15 chr9 118893029 118893162 -5183010 - MT2B LTR ERVL -305 296 153 7 1492 322 268 45 96 chr9 118893548 118893705 -5182467 - L1M5 LINE L1 -1477 4669 4521 7 1492 26 0 0 0 chr9 118893766 118893792 -5182380 + AT_rich Low_complexity Low_complexity 1 26 0 7 1492 287 244 123 200 chr9 118893952 118894172 -5182000 - B4A SINE B4 -88 204 2 7 1492 288 316 164 10 chr9 118894308 118894503 -5181669 - L1MEg LINE L1 -2047 4099 3875 7 1492 332 244 20 61 chr9 118894722 118894844 -5181328 + B1F2 SINE Alu 2 115 -34 7 1492 264 244 0 137 chr9 118894825 118894920 -5181252 - RSINE1 SINE B4 -82 83 2 8 1492 275 217 97 11 chr9 118894992 118895005 -5181167 - B1F1 SINE Alu -23 126 112 8 1492 225 0 0 0 chr9 118895005 118895030 -5181142 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 8 1492 360 186 54 2 chr9 118895030 118895131 -5181041 - PB1D10 SINE Alu -38 111 1 8 1492 532 297 91 30 chr9 118895437 118895701 -5180471 - B4A SINE B4 -12 280 1 8 1492 254 349 45 28 chr9 118895709 118895886 -5180286 - L1MEg LINE L1 -5374 868 689 7 1492 747 221 13 0 chr9 118896260 118896409 -5179763 - RSINE1 SINE B4 -13 152 2 8 1492 544 313 153 10 chr9 118896528 118896934 -5179238 + MLT1C LTR MaLR 3 466 -1 8 1492 354 267 0 65 chr9 118897125 118897233 -5178939 + (TG)n Simple_repeat Simple_repeat 2 102 0 8 1492 656 265 92 19 chr9 118897277 118897539 -5178633 - B4A SINE B4 -10 282 2 8 1492 471 35 0 0 chr9 118897947 118898004 -5178168 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1492 1525 164 63 66 chr9 118898432 118898765 -5177407 + ORR1C1 LTR MaLR 47 378 0 8 1492 228 211 35 0 chr9 118899341 118899398 -5176774 - 4.5SRNA scRNA scRNA -27 67 9 8 1492 276 175 0 0 chr9 118900314 118900377 -5175795 + GA-rich Low_complexity Low_complexity 3 65 0 8 1492 396 276 99 0 chr9 118900385 118900537 -5175635 - MLT1D LTR MaLR -33 472 306 8 1492 509 308 0 65 chr9 118902508 118902640 -5173532 + RSINE1 SINE B4 21 147 -18 8 1492 414 0 0 0 chr9 118902640 118902686 -5173486 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1492 509 308 0 65 chr9 118902686 118902706 -5173466 + RSINE1 SINE B4 148 163 -2 8 1492 295 203 0 33 chr9 118902764 118902825 -5173347 + RLTR25A LTR ERVK 514 572 -531 8 1492 780 58 0 0 chr9 118902771 118902874 -5173298 + B1_Mm SINE Alu 45 147 0 8 1492 31 0 0 0 chr9 118902875 118902906 -5173266 + AT_rich Low_complexity Low_complexity 1 31 0 8 1492 358 316 132 54 chr9 118903045 118903303 -5172869 - B4A SINE B4 -14 278 1 8 1492 539 269 96 96 chr9 118904728 118905020 -5171152 + B4A SINE B4 1 292 0 8 1492 263 176 44 0 chr9 118905118 118905209 -5170963 + (TG)n Simple_repeat Simple_repeat 1 95 0 8 1492 481 239 91 79 chr9 118905552 118905680 -5170492 - L1M4c LINE L1 -2998 3378 3268 8 1492 1113 144 33 38 chr9 118905680 118905890 -5170282 - B3 SINE B2 -6 210 2 8 1492 481 239 91 79 chr9 118905890 118906015 -5170157 - L1M4c LINE L1 -3109 3267 3122 8 1492 363 241 8 82 chr9 118906016 118906138 -5170034 - MT2B2 LTR ERVL -297 287 175 8 1492 725 49 0 55 chr9 118906035 118906144 -5170028 - B1_Mus1 SINE Alu -40 108 6 8 1492 776 276 153 6 chr9 118906153 118906513 -5169659 - L1M4c LINE L1 -3310 3066 2654 8 1492 384 143 0 0 chr9 118906524 118906594 -5169578 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1492 280 42 40 40 chr9 118906712 118906762 -5169410 + (TCCC)n Simple_repeat Simple_repeat 1 50 0 8 1492 373 293 114 18 chr9 118906762 118906929 -5169243 - B4A SINE B4 -86 206 24 8 1492 362 287 130 31 chr9 118907013 118907342 -5168830 - L1M4c LINE L1 -3835 2541 2187 8 1492 359 336 100 9 chr9 118907510 118907720 -5168452 + L1M5 LINE L1 4574 4802 -1344 8 1492 1166 48 0 20 chr9 118907874 118908024 -5168148 + B1_Mus2 SINE Alu 1 147 0 8 1492 259 345 11 11 chr9 118908033 118908049 -5168123 + B4 SINE B4 69 84 -208 8 1492 371 276 0 0 chr9 118908049 118908125 -5168047 + B1_Mur3 SINE Alu 1 76 -73 8 1492 242 147 0 74 chr9 118908129 118908210 -5167962 + (CATA)n Simple_repeat Simple_repeat 1 75 0 8 1492 252 0 0 0 chr9 118908228 118908256 -5167916 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1492 236 182 146 0 chr9 118908373 118908428 -5167744 + ID4 SINE ID 20 82 -1 8 1492 555 78 0 0 chr9 118908430 118908507 -5167665 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 8 1492 436 226 21 0 chr9 118908985 118909078 -5167094 - RSINE1 SINE B4 -68 97 3 8 1492 450 0 0 0 chr9 118909334 118909384 -5166788 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1492 738 234 232 38 chr9 118909550 118909843 -5166329 + ORR1D2 LTR MaLR 18 367 -3 8 1492 993 247 42 122 chr9 118910137 118910538 -5165634 - MTE2a LTR MaLR -10 369 1 8 1492 1059 52 0 0 chr9 118911951 118912085 -5164087 + (TGG)n Simple_repeat Simple_repeat 3 136 0 8 1492 355 247 262 12 chr9 118912141 118912313 -5163859 - B4A SINE B4 -77 215 1 8 1492 237 352 107 0 chr9 118912799 118912921 -5163251 - Lx8 LINE L1 -143 7330 7196 8 1492 309 26 0 0 chr9 118913945 118913983 -5162189 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1492 712 291 79 28 chr9 118914015 118914269 -5161903 - B4A SINE B4 -24 268 2 8 1492 284 289 8 0 chr9 118914435 118914531 -5161641 - B4 SINE B4 -191 101 2 8 1492 312 356 85 8 chr9 118914673 118914803 -5161369 + B1F1 SINE Alu 10 149 0 8 1492 535 221 157 0 chr9 118916703 118916843 -5159329 + RSINE1 SINE B4 4 165 0 8 1492 425 272 222 0 chr9 118916946 118917108 -5159064 - B3A SINE B2 0 198 1 8 1492 260 287 62 31 chr9 118917152 118917249 -5158923 - MIR SINE MIR -3 259 160 8 1492 234 0 0 0 chr9 118917984 118918010 -5158162 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 8 1492 520 146 13 48 chr9 118918741 118918972 -5157200 + (TG)n Simple_repeat Simple_repeat 1 222 0 8 1492 585 241 47 70 chr9 118918978 118919277 -5156895 - B4A SINE B4 0 292 1 8 1492 649 246 7 0 chr9 118920688 118920826 -5155346 + RSINE1 SINE B4 4 142 -23 8 1492 447 19 0 0 chr9 118920828 118920880 -5155292 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1492 391 335 51 58 chr9 118921072 118921351 -5154821 + L1MEe LINE L1 2253 2532 -3683 8 1492 337 285 222 0 chr9 118921411 118921555 -5154617 + B3A SINE B2 17 192 -6 8 1492 259 229 0 62 chr9 118921907 118921972 -5154200 + B4A SINE B4 232 292 0 8 1492 197 83 28 0 chr9 118923217 118923253 -5152919 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 8 1492 596 235 65 89 chr9 118924177 118924345 -5151827 + RSINE1 SINE B4 2 165 0 8 1492 659 228 70 60 chr9 118924366 118924567 -5151605 + B3 SINE B2 1 203 -13 8 1492 317 77 0 37 chr9 118924567 118924621 -5151551 + (CATA)n Simple_repeat Simple_repeat 3 54 0 8 1492 1235 102 17 0 chr9 118924709 118924886 -5151286 + B2_Mm2 SINE B2 2 181 -14 8 1492 1232 34 0 0 chr9 118924892 118925040 -5151132 - B1_Mus1 SINE Alu 0 148 1 8 1492 717 245 80 26 chr9 118925123 118925387 -5150785 - MER33 DNA MER1_type -25 299 22 8 1492 571 210 220 13 chr9 118925722 118925881 -5150291 + B3A SINE B2 1 192 -6 8 1492 357 297 62 8 chr9 118926078 118926207 -5149965 + L1M5 LINE L1 4127 4262 -1884 8 1492 709 259 0 0 chr9 118926465 118926627 -5149545 + RSINE1 SINE B4 2 163 -2 8 1492 749 193 96 10 chr9 118926847 118927046 -5149126 + B3 SINE B2 1 216 0 8 1492 354 169 56 7 chr9 118927597 118927740 -5148432 + (CA)n Simple_repeat Simple_repeat 2 151 0 8 1492 492 238 40 11 chr9 118927755 118927929 -5148243 + (CA)n Simple_repeat Simple_repeat 1 179 0 8 1492 237 122 61 0 chr9 118930568 118930617 -5145555 - ID4_ SINE ID -31 52 1 8 1492 312 325 94 19 chr9 118931527 118931687 -5144485 - L1M5 LINE L1 -538 5586 5415 8 1492 285 29 0 0 chr9 118931887 118931921 -5144251 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1492 345 280 134 15 chr9 118932751 118932885 -5143287 + RSINE1 SINE B4 4 153 -12 8 1492 331 200 78 69 chr9 118933000 118933102 -5143070 + PB1D10 SINE Alu 7 109 -8 8 1492 416 265 52 22 chr9 118934583 118934718 -5141454 - ID_B1 SINE B4 -7 217 79 8 1492 698 249 63 19 chr9 118935263 118935468 -5140704 + B3 SINE B2 1 214 -2 8 1492 32 43 0 0 chr9 118935624 118935670 -5140502 + AT_rich Low_complexity Low_complexity 1 46 0 8 1492 334 294 25 38 chr9 118937718 118937877 -5138295 - RSINE1 SINE B4 -4 161 5 8 1492 667 109 11 27 chr9 118939509 118939633 -5136539 + B1_Mur3 SINE Alu 25 149 0 8 1492 306 307 140 17 chr9 118939522 118939701 -5136471 + MT2B2 LTR ERVL 198 398 -186 8 1492 207 0 0 0 chr9 118940083 118940106 -5136066 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 8 1492 302 347 68 0 chr9 118943239 118943386 -5132786 + MIRb SINE MIR 86 242 -26 8 1492 207 0 0 0 chr9 118944113 118944136 -5132036 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1492 942 219 50 40 chr9 118944622 118944822 -5131350 + B3 SINE B2 2 203 -13 8 1492 405 333 7 27 chr9 118945587 118945735 -5130437 + RSINE1 SINE B4 2 146 -19 8 1492 837 239 6 0 chr9 118945866 118946042 -5130130 + B4A SINE B4 116 292 0 8 1492 342 183 0 0 chr9 118946044 118946115 -5130057 + (CA)n Simple_repeat Simple_repeat 1 71 0 8 1492 183 139 0 0 chr9 118946195 118946231 -5129941 + (C)n Simple_repeat Simple_repeat 1 36 0 8 1492 193 311 144 75 chr9 118946778 118946952 -5129220 + MIRb SINE MIR 60 245 -23 8 1492 528 59 0 0 chr9 118947341 118947409 -5128763 + (TCC)n Simple_repeat Simple_repeat 2 69 0 8 1492 1143 89 7 0 chr9 118947410 118947556 -5128616 - B1_Mus2 SINE Alu 0 147 1 8 1492 516 161 97 0 chr9 118947681 118947774 -5128398 + PB1D9 SINE Alu 2 103 -17 8 1492 485 278 112 70 chr9 118947950 118948209 -5127963 - L1MC5 LINE L1 -391 7570 7301 8 1492 1275 86 15 46 chr9 118948221 118948417 -5127755 - B2_Mm2 SINE B2 -4 191 2 8 1492 987 190 15 53 chr9 118948424 118948630 -5127542 - B3A SINE B2 0 198 1 8 1492 698 278 20 40 chr9 118948650 118948852 -5127320 - B3A SINE B2 0 198 1 8 1492 207 258 15 0 chr9 118948974 118949011 -5127161 + T-rich Low_complexity Low_complexity 33 69 0 8 1492 1185 82 0 0 chr9 118949011 118949158 -5127014 - B1_Mus1 SINE Alu 0 148 2 8 1492 207 258 15 0 chr9 118949158 118949186 -5126986 + T-rich Low_complexity Low_complexity 4 32 0 8 1492 217 51 0 49 chr9 118950028 118950069 -5126103 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1492 25 0 0 0 chr9 118951416 118951441 -5124731 + AT_rich Low_complexity Low_complexity 1 25 0 9 1492 486 204 0 0 chr9 118953617 118953720 -5122452 + (TATG)n Simple_repeat Simple_repeat 2 104 0 9 1492 357 108 0 22 chr9 118954485 118954551 -5121621 - B2_Mm2 SINE B2 -107 109 47 9 1492 37 23 0 0 chr9 118954587 118954631 -5121541 + AT_rich Low_complexity Low_complexity 1 44 0 9 1492 1019 90 167 0 chr9 118954639 118954795 -5121377 - B2_Mm2 SINE B2 -13 182 1 9 1492 518 204 44 9 chr9 118954799 118954913 -5121259 - PB1D9 SINE Alu 0 120 3 9 1492 217 246 32 16 chr9 118954950 118955012 -5121160 + B3A SINE B2 18 80 -118 9 1492 253 208 57 0 chr9 118954960 118955013 -5121159 + B4A SINE B4 27 82 -210 9 1492 755 250 66 29 chr9 118955030 118955277 -5120895 + B4 SINE B4 41 292 0 9 1492 244 280 128 20 chr9 118955330 118955432 -5120740 + MER5B DNA MER1_type 66 178 0 9 1492 745 187 115 26 chr9 118955660 118955852 -5120320 + B3 SINE B2 1 209 -7 9 1492 911 122 0 48 chr9 118956706 118956895 -5119277 + GA-rich Low_complexity Low_complexity 1 180 0 9 1492 432 0 0 0 chr9 118957095 118957143 -5119029 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 9 1492 857 102 16 0 chr9 118957145 118957272 -5118900 - B1_Mur4 SINE Alu -6 144 16 9 1492 207 215 0 0 chr9 118957413 118957478 -5118694 + (CA)n Simple_repeat Simple_repeat 1 65 0 9 1492 465 50 0 0 chr9 118957911 118957971 -5118201 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 1492 326 204 10 0 chr9 118958098 118958196 -5117976 + (TG)n Simple_repeat Simple_repeat 1 99 0 9 1492 463 215 11 0 chr9 118958235 118958412 -5117760 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1492 586 262 158 33 chr9 118958472 118958713 -5117459 - B4A SINE B4 -21 271 1 9 1492 263 287 213 0 chr9 118958793 118958915 -5117257 + B4A SINE B4 77 224 -68 9 1492 531 214 19 0 chr9 118958808 118958926 -5117246 + PB1D9 SINE Alu 11 120 0 9 1492 360 277 35 9 chr9 118958953 118959066 -5117106 - PB1D10 SINE Alu 0 117 2 9 1492 22 0 0 0 chr9 118959083 118959105 -5117067 + AT_rich Low_complexity Low_complexity 1 22 0 9 1492 194 42 61 41 chr9 118959129 118959178 -5116994 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 9 1492 189 74 0 0 chr9 118959192 118959219 -5116953 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1492 815 156 62 21 chr9 118959246 118959390 -5116782 - B1_Mur4 SINE Alu 0 150 1 9 1492 610 329 112 13 chr9 118959539 118959853 -5116319 + MER2 DNA MER2_type 1 345 0 9 1492 478 229 9 18 chr9 118959902 118960013 -5116159 + PB1D7 SINE Alu 10 119 -1 9 1492 258 86 69 0 chr9 118960013 118960071 -5116101 + GA-rich Low_complexity Low_complexity 2 63 0 9 1492 356 244 25 13 chr9 118960166 118960245 -5115927 + RSINE1 SINE B4 51 130 -35 9 1492 378 0 0 0 chr9 118960292 118960334 -5115838 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1492 378 0 0 0 chr9 118960334 118960375 -5115797 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1492 484 191 0 0 chr9 118960987 118961076 -5115096 + PB1D10 SINE Alu 28 116 -1 9 1492 1189 202 42 0 chr9 118966366 118966579 -5109593 - ID_B1 SINE B4 -1 223 2 9 1492 619 284 67 41 chr9 118967762 118968059 -5108113 - L1MB8 LINE L1 -16 6162 5859 9 1492 945 204 6 8 chr9 118968061 118968600 -5107572 + CT-rich Low_complexity Low_complexity 1 537 0 9 1492 233 193 17 34 chr9 118968607 118968666 -5107506 - ID4 SINE ID -17 66 9 9 1492 326 362 31 18 chr9 118968677 118968840 -5107332 - L1MB8 LINE L1 -328 5856 5692 9 1492 393 22 0 0 chr9 118969355 118969401 -5106771 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1492 228 288 0 0 chr9 118970374 118970433 -5105739 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1492 209 230 14 0 chr9 118970464 118970538 -5105634 + C-rich Low_complexity Low_complexity 3 77 0 9 1492 342 200 126 29 chr9 118972908 118973011 -5103161 + PB1D10 SINE Alu 5 117 0 9 1492 553 273 85 5 chr9 118973885 118974084 -5102088 - ID_B1 SINE B4 -7 217 3 9 1492 688 185 6 6 chr9 118974752 118974915 -5101257 + GA-rich Low_complexity Low_complexity 1 163 0 9 1492 736 225 161 24 chr9 118975173 118975428 -5100744 + B4 SINE B4 3 292 0 9 1492 375 141 0 0 chr9 118975428 118975492 -5100680 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1492 242 29 29 0 chr9 118976273 118976308 -5099864 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9 1492 266 226 0 0 chr9 118978216 118978278 -5097894 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1492 552 228 174 0 chr9 118978428 118978595 -5097577 - ID_B1 SINE B4 -28 196 1 9 1492 508 269 22 29 chr9 118978595 118978733 -5097439 - ID_B1 SINE B4 -7 217 81 9 1492 431 215 16 99 chr9 118980059 118980250 -5095922 + C-rich Low_complexity Low_complexity 1 175 0 9 1492 25 0 0 0 chr9 118980655 118980680 -5095492 + AT_rich Low_complexity Low_complexity 1 25 0 9 1492 569 258 115 10 chr9 118982048 118982248 -5093924 - B4A SINE B4 -71 221 1 9 1492 639 162 0 57 chr9 118982259 118982383 -5093789 - ID_B1 SINE B4 -9 215 99 9 1492 297 118 0 0 chr9 118983119 118983170 -5093002 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 1492 251 226 145 0 chr9 118984426 118984488 -5091684 - ID4_ SINE ID -7 76 6 9 1492 189 74 0 0 chr9 118985495 118985522 -5090650 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 9 1492 310 346 59 15 chr9 118985572 118985611 -5090561 - ID_B1 SINE B4 -2 222 82 9 1492 382 274 0 10 chr9 118985611 118985707 -5090465 - PB1D10 SINE Alu -22 95 1 9 1492 430 241 75 62 chr9 118986219 118986234 -5089938 + B1F1 SINE Alu 2 73 -76 9 1492 535 228 0 34 chr9 118986234 118986352 -5089820 + ID_B1 SINE B4 103 216 -8 9 1492 430 241 75 62 chr9 118986352 118986365 -5089807 + B1F1 SINE Alu 74 149 0 9 1492 373 175 55 118 chr9 118986377 118986392 -5089780 + MT2B LTR ERVL 155 162 -439 9 1492 720 115 62 0 chr9 118986392 118986505 -5089667 + B1_Mus1 SINE Alu 2 121 -27 9 1492 397 238 65 19 chr9 118986505 118986612 -5089560 + L1MB7 LINE L1 4383 4494 -1652 9 1492 515 267 9 0 chr9 118986614 118986730 -5089442 + B3A SINE B2 1 117 -81 9 1492 227 31 31 0 chr9 118986756 118986788 -5089384 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1492 808 275 75 38 chr9 118986804 118987175 -5088997 + L1MB7 LINE L1 4487 4871 -1275 9 1492 382 176 54 0 chr9 118987228 118987302 -5088870 + RSINE1 SINE B4 47 124 -41 9 1492 450 0 0 0 chr9 118987302 118987352 -5088820 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1492 243 268 7 42 chr9 118987380 118987399 -5088773 + ORR1B1-int LTR MaLR 607 647 -862 9 1492 374 257 0 128 chr9 118987399 118987424 -5088748 + MT2B LTR ERVL 145 167 -434 9 1492 1203 78 78 0 chr9 118987424 118987590 -5088582 + B2_Mm2 SINE B2 2 180 -15 9 1492 243 268 7 42 chr9 118987590 118987689 -5088483 + ORR1B1-int LTR MaLR 648 745 -764 9 1492 740 62 7 1 chr9 118987689 118987708 -5088464 + B1_Mus1 SINE Alu 1 122 -27 9 1492 415 256 75 8 chr9 118987805 118987939 -5088233 + L1MB7 LINE L1 5468 5610 -574 9 1492 506 283 16 88 chr9 118987960 118988135 -5088037 + B3A SINE B2 48 209 -7 9 1492 1135 199 0 18 chr9 118988135 118988355 -5087817 + B3 SINE B2 1 216 0 9 1492 450 356 78 14 chr9 118988376 118988669 -5087503 + L1MB7 LINE L1 5593 5904 -280 9 1492 445 239 22 0 chr9 118988784 118988876 -5087296 - B4A SINE B4 -197 95 2 9 1492 250 167 0 0 chr9 118988888 118988936 -5087236 + L1MB7 LINE L1 6129 6176 -8 9 1492 250 206 93 27 chr9 118988949 118989024 -5087148 + PB1D10 SINE Alu 2 81 -36 9 1492 522 260 93 47 chr9 118989386 118989600 -5086572 + MLT1A LTR MaLR 27 250 -124 9 1492 514 306 163 35 chr9 118989697 118989954 -5086218 + MTEb LTR MaLR 90 379 0 9 1492 358 50 33 16 chr9 118992101 118992162 -5084010 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 9 1492 839 261 24 29 chr9 118992167 118992376 -5083796 - ID_B1 SINE B4 -15 209 2 9 1492 850 48 111 0 chr9 118992548 118992674 -5083498 + B1_Mus1 SINE Alu 9 148 0 9 1492 1131 146 43 11 chr9 118992691 118992878 -5083294 + B2_Mm2 SINE B2 1 193 -2 9 1492 219 69 0 0 chr9 118993011 118993040 -5083132 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 9 1492 357 24 0 0 chr9 118993047 118993089 -5083083 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1492 405 205 74 20 chr9 118996380 118996530 -5079642 - MIRc SINE MIR 0 262 106 9 1492 360 286 11 0 chr9 118997544 118997635 -5078537 - ID_B1 SINE B4 -34 190 99 9 1492 924 146 11 6 chr9 118998134 118998313 -5077859 + CT-rich Low_complexity Low_complexity 1 180 0 9 1492 340 217 152 3 chr9 118998323 118998422 -5077750 - B1_Mur4 SINE Alu -10 110 2 9 1492 313 288 12 36 chr9 118998429 118998512 -5077660 + L1MEg LINE L1 1872 1952 -4132 9 1492 1010 110 14 0 chr9 118999047 118999192 -5076980 - B1_Mus1 SINE Alu -1 147 1 9 1492 664 200 22 22 chr9 118999322 118999460 -5076712 + B1F SINE Alu 11 148 -1 9 1492 530 306 70 23 chr9 118999727 118999941 -5076231 - ID_B1 SINE B4 0 224 1 9 1492 297 0 0 0 chr9 119000407 119000440 -5075732 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1492 414 0 0 0 chr9 119000440 119000485 -5075687 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1492 683 210 8 0 chr9 119001431 119001555 -5074617 + RSINE1 SINE B4 8 132 -33 3 1492 214 294 19 7 chr9 119004681 119004783 -5071389 + MIRc SINE MIR 18 121 -155 4 1492 2546 67 47 42 chr9 119005199 119005607 -5070565 + RLTR9F LTR ERVK 1 410 -5 5 1492 545 204 35 0 chr9 119005610 119005723 -5070449 - PB1D9 SINE Alu -2 118 2 6 1492 225 317 64 40 chr9 119005871 119005996 -5070176 + RMER15 LTR ERVL 1 128 -447 7 1492 1448 75 38 0 chr9 119006363 119006549 -5069623 + B2_Mm2 SINE B2 1 193 -2 8 1492 209 327 45 0 chr9 119006731 119006841 -5069331 - L2a LINE L2 -260 3166 3052 9 1492 328 279 48 9 chr9 119007244 119007349 -5068823 + B3 SINE B2 108 216 0 1 1492 956 152 215 0 chr9 119007375 119007552 -5068620 - B3 SINE B2 0 216 2 1 1492 219 23 93 0 chr9 119007552 119007595 -5068577 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1492 462 280 29 163 chr9 119007869 119007920 -5068252 + B4 SINE B4 90 140 -152 1 1492 1414 105 0 10 chr9 119007920 119008113 -5068059 + B2_Mm2 SINE B2 1 191 -4 1 1492 602 188 79 50 chr9 119008113 119008201 -5067971 + B1_Mur2 SINE Alu 56 148 -1 1 1492 462 280 29 163 chr9 119008201 119008270 -5067902 + B4 SINE B4 141 270 -22 1 1492 266 291 0 12 chr9 119008892 119008972 -5067200 - ID4 SINE ID -1 82 4 1 1492 419 288 32 8 chr9 119008989 119009115 -5067057 - B1F SINE Alu -9 140 12 1 1492 361 294 20 59 chr9 119009115 119009141 -5067031 - ID_B1 SINE B4 -9 215 70 1 1492 243 88 0 0 chr9 119009186 119009220 -5066952 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1492 180 234 0 0 chr9 119009345 119009392 -5066780 + (CGGA)n Simple_repeat Simple_repeat 2 48 0 2 1492 236 322 67 0 chr9 119009955 119010045 -5066127 - MER115 DNA Tip100 -430 263 168 2 1492 332 232 0 12 chr9 119010353 119010436 -5065736 + B3 SINE B2 135 216 0 2 1492 1218 80 108 6 chr9 119010436 119010612 -5065560 - B2_Mm2 SINE B2 -1 194 1 2 1492 661 176 22 22 chr9 119010627 119010761 -5065411 - B1_Mur1 SINE Alu 0 149 16 2 1492 288 302 66 102 chr9 119010628 119010794 -5065378 - B4 SINE B4 -63 229 70 2 1492 267 200 49 69 chr9 119010910 119011012 -5065160 + B1F SINE Alu 50 149 0 2 1492 771 194 130 11 chr9 119011203 119011380 -5064792 + B3A SINE B2 1 198 0 2 1492 229 256 43 109 chr9 119011420 119011512 -5064660 + PB1D10 SINE Alu 12 97 -20 2 1492 198 246 118 40 chr9 119012426 119012502 -5063670 - L2b LINE L2 0 3375 3294 2 1492 218 283 0 0 chr9 119012612 119012658 -5063514 + RSINE1 SINE B4 2 47 -118 3 1492 476 327 157 0 chr9 119012692 119012940 -5063232 - Lx8 LINE L1 -307 7166 6880 3 1493 603 256 31 19 chr9 119013401 119013560 -5062612 + RSINE1 SINE B4 3 163 -2 3 1493 571 323 80 13 chr9 119013933 119014159 -5062013 + B4A SINE B4 52 292 0 3 1493 633 285 5 30 chr9 119014191 119014390 -5061782 - B3A SINE B2 -2 196 3 3 1493 225 0 0 0 chr9 119015084 119015109 -5061063 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 3 1493 368 239 0 0 chr9 119015359 119015430 -5060742 - B4 SINE B4 -103 189 119 3 1493 1566 43 0 11 chr9 119015430 119015618 -5060554 - B2_Mm2 SINE B2 -8 187 2 3 1493 428 264 131 54 chr9 119016072 119016240 -5059932 + B3A SINE B2 2 182 -16 3 1493 231 306 0 0 chr9 119016245 119016353 -5059819 + (CA)n Simple_repeat Simple_repeat 2 109 0 3 1493 458 247 169 62 chr9 119016772 119016949 -5059223 - B3A SINE B2 0 198 3 4 1493 394 176 0 39 chr9 119017187 119017264 -5058908 - ID SINE ID -142 82 9 4 1493 499 228 127 33 chr9 119017545 119017695 -5058477 + RSINE1 SINE B4 1 164 -1 4 1493 216 261 26 18 chr9 119017853 119017966 -5058206 + (TATAA)n Simple_repeat Simple_repeat 5 118 0 4 1493 210 71 0 0 chr9 119020246 119020274 -5055898 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1493 371 226 255 0 chr9 119020293 119020399 -5055773 + RSINE1 SINE B4 1 133 -32 4 1493 704 211 35 4 chr9 119020478 119020647 -5055525 + B3 SINE B2 1 182 -11 4 1493 1143 96 52 82 chr9 119020784 119020978 -5055194 - B2_Mm2 SINE B2 -6 189 2 4 1493 237 274 43 97 chr9 119021824 119021917 -5054255 - MTEb LTR MaLR -287 92 5 4 1493 2329 126 114 12 chr9 119021974 119022377 -5053795 - BGLII_A LTR ERVK -1 444 1 4 1493 1125 134 37 11 chr9 119022420 119022608 -5053564 + B2_Mm2 SINE B2 2 194 -1 5 1493 759 299 48 44 chr9 119022973 119023243 -5052929 + B4A SINE B4 1 271 -21 5 1493 595 216 37 50 chr9 119023633 119023794 -5052378 - B3A SINE B2 -38 160 2 5 1493 385 274 35 9 chr9 119023895 119024009 -5052163 - PB1D10 SINE Alu 0 117 1 5 1493 414 245 1 0 chr9 119023922 119024021 -5052151 - ID_B1 SINE B4 -56 168 73 5 1493 571 268 56 21 chr9 119024460 119024651 -5051521 + B3A SINE B2 9 204 -12 5 1493 1375 82 27 0 chr9 119024653 119024836 -5051336 - B2_Mm1a SINE B2 -5 188 1 5 1493 298 286 12 0 chr9 119024938 119025022 -5051150 + L1MC4a LINE L1 6516 6600 -1282 5 1493 1073 270 18 18 chr9 119025038 119025321 -5050851 + B4A SINE B4 8 290 -2 5 1493 237 319 72 0 chr9 119025435 119025504 -5050668 + B4 SINE B4 217 290 -2 5 1493 315 360 33 14 chr9 119025582 119025742 -5050430 + L1MC4a LINE L1 6612 6789 -1093 5 1493 416 212 177 0 chr9 119025748 119025861 -5050311 + ID_B1 SINE B4 2 134 -90 6 1493 287 296 0 0 chr9 119025890 119025961 -5050211 + L1MC4a LINE L1 6771 6841 -1154 5 1493 290 328 76 30 chr9 119026018 119026216 -5049956 + HAL1 LINE L1 1818 2024 -483 6 1493 315 162 0 0 chr9 119026259 119026339 -5049833 + CT-rich Low_complexity Low_complexity 2 81 0 6 1493 240 287 0 0 chr9 119026379 119026480 -5049692 + (TG)n Simple_repeat Simple_repeat 1 101 0 6 1493 593 212 6 0 chr9 119026491 119026670 -5049502 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1493 221 278 107 13 chr9 119026670 119026818 -5049354 - B4 SINE B4 0 165 1 6 1493 226 320 90 0 chr9 119026982 119027060 -5049112 + MER2B DNA MER2_type 76 160 -176 6 1493 267 296 63 27 chr9 119027204 119027315 -5048857 + MER2 DNA MER2_type 127 241 -104 6 1493 250 316 66 41 chr9 119027377 119027499 -5048673 - MTE2a LTR MaLR -87 292 168 6 1493 1133 113 32 11 chr9 119027504 119027691 -5048481 - B2_Mm2 SINE B2 -2 193 3 6 1493 585 315 71 13 chr9 119027691 119027913 -5048259 - MTD LTR MaLR -184 235 1 6 1493 599 263 0 0 chr9 119028121 119028254 -5047918 - B1F1 SINE Alu -16 133 1 7 1493 540 262 87 0 chr9 119028377 119028526 -5047646 + RSINE1 SINE B4 4 165 0 7 1493 267 220 0 0 chr9 119028532 119028623 -5047549 + (CA)n Simple_repeat Simple_repeat 1 91 0 7 1493 338 281 42 34 chr9 119029164 119029282 -5046890 + PB1D7 SINE Alu 2 120 0 7 1493 207 49 23 47 chr9 119029433 119029476 -5046696 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 7 1493 356 276 76 38 chr9 119029523 119029681 -5046491 - RMER15 LTR ERVL -5 570 407 7 1493 605 211 39 8 chr9 119030715 119030844 -5045328 - RSINE1 SINE B4 -7 158 26 7 1493 733 260 146 23 chr9 119031400 119031660 -5044512 + B4 SINE B4 1 292 0 7 1493 215 292 0 0 chr9 119032538 119032603 -5043569 + RSINE1 SINE B4 98 162 -3 7 1493 461 284 55 0 chr9 119032641 119032768 -5043404 + ORR1E LTR MaLR 3 136 -223 7 1493 258 156 0 0 chr9 119033609 119033654 -5042518 + CT-rich Low_complexity Low_complexity 2 46 0 8 1493 21 0 0 0 chr9 119034042 119034063 -5042109 + GC_rich Low_complexity Low_complexity 1 21 0 8 1493 762 171 0 0 chr9 119034165 119034341 -5041831 + (TG)n Simple_repeat Simple_repeat 2 177 0 8 1493 225 0 0 0 chr9 119035497 119035522 -5040650 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1493 222 328 73 16 chr9 119038151 119038168 -5038004 + ID SINE ID 60 76 -148 8 1493 270 56 0 0 chr9 119038168 119038204 -5037968 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1493 222 328 73 16 chr9 119038204 119038310 -5037862 + ID_B1 SINE B4 77 190 -34 8 1493 572 224 13 45 chr9 119039401 119039555 -5036617 + B3A SINE B2 1 149 -49 8 1493 257 219 94 5 chr9 119039711 119039818 -5036354 + L1M4 LINE L1 5115 5227 -919 8 1493 1014 207 137 67 chr9 119039877 119040234 -5035938 + RMER13A LTR ERVK 2 383 -477 8 1493 237 258 20 20 chr9 119040743 119040842 -5035330 - L1M4 LINE L1 -3476 2670 2572 8 1493 1433 248 55 17 chr9 119040879 119041282 -5034890 - Lx6 LINE L1 -70 7390 6973 9 1493 323 250 11 11 chr9 119041309 119041398 -5034774 - L1M4 LINE L1 -3570 2576 2488 8 1493 612 276 49 80 chr9 119041617 119041881 -5034291 + B4A SINE B4 1 256 -36 9 1493 312 91 0 0 chr9 119041900 119041944 -5034228 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1493 279 322 35 0 chr9 119041959 119042046 -5034126 + PB1D10 SINE Alu 1 90 -27 9 1493 291 140 0 0 chr9 119042088 119042138 -5034034 + (TATG)n Simple_repeat Simple_repeat 1 50 0 9 1493 378 276 48 31 chr9 119042161 119042323 -5033849 - MLT2C1 LTR ERVL -184 213 54 9 1493 289 291 50 43 chr9 119042433 119042573 -5033599 + L1MCb LINE L1 153 293 -5752 9 1493 1072 245 112 31 chr9 119042627 119042985 -5033187 - MTD LTR MaLR -32 387 1 9 1493 464 225 31 0 chr9 119043252 119043383 -5032789 - B1F2 SINE Alu 0 150 9 9 1493 237 296 102 96 chr9 119043256 119043413 -5032759 - B4 SINE B4 -71 221 64 9 1493 246 32 0 0 chr9 119044165 119044196 -5031976 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 1493 968 267 134 15 chr9 119045208 119045543 -5030629 - MTEa LTR MaLR -4 375 1 1 1493 291 71 0 0 chr9 119048052 119048094 -5028078 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1493 379 248 23 100 chr9 119049720 119049850 -5026322 - PB1 SINE Alu -7 120 1 1 1493 1051 278 11 18 chr9 119050953 119051186 -5024986 - B4 SINE B4 -19 273 38 1 1493 1373 203 207 20 chr9 119051186 119051538 -5024634 - MTD LTR MaLR -1 418 1 1 1493 1051 278 11 18 chr9 119051538 119051579 -5024593 - B4 SINE B4 -255 37 1 1 1493 735 52 0 0 chr9 119056824 119056920 -5019252 + (CCCCAG)n Simple_repeat Simple_repeat 2 97 0 1 1493 243 0 0 0 chr9 119060803 119060830 -5015342 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1493 762 11 0 0 chr9 119060830 119060916 -5015256 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 1493 33 43 0 0 chr9 119066405 119066452 -5009720 + AT_rich Low_complexity Low_complexity 1 47 0 1 1493 643 310 72 18 chr9 119067105 119067381 -5008791 + B4A SINE B4 1 291 -1 1 1493 284 258 165 126 chr9 119067627 119067809 -5008363 - RMER30 DNA MER1_type -4 198 10 1 1493 216 0 0 0 chr9 119068236 119068260 -5007912 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1493 396 310 128 30 chr9 119068260 119068331 -5007841 - ID_B1 SINE B4 -11 213 144 1 1493 198 0 0 0 chr9 119068331 119068353 -5007819 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 1 1493 396 310 128 30 chr9 119068353 119068473 -5007699 - ID_B1 SINE B4 -81 143 1 1 1493 302 234 51 25 chr9 119068571 119068650 -5007522 - L1M4 LINE L1 -946 5200 5120 1 1493 201 193 23 35 chr9 119068883 119068969 -5007203 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1493 886 299 32 68 chr9 119069033 119069377 -5006795 - MTE2a LTR MaLR -45 374 50 1 1493 546 256 56 0 chr9 119069389 119069514 -5006658 + ID_B1 SINE B4 80 211 -13 1 1493 495 0 0 0 chr9 119069780 119069835 -5006337 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1493 531 0 0 0 chr9 119069835 119069893 -5006279 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1493 457 268 65 55 chr9 119070290 119070507 -5005665 + ID_B1 SINE B4 1 219 -5 1 1493 762 111 0 8 chr9 119070695 119070813 -5005359 - B2_Mm2 SINE B2 -78 117 1 1 1493 507 33 0 0 chr9 119070974 119071035 -5005137 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1493 757 242 60 0 chr9 119071087 119071269 -5004903 - B4A SINE B4 -4 288 96 1 1493 228 345 24 0 chr9 119071416 119071500 -5004672 - B4A SINE B4 -192 100 15 1 1493 208 171 24 0 chr9 119071671 119071712 -5004460 + T-rich Low_complexity Low_complexity 4 45 0 1 1493 198 0 0 0 chr9 119073205 119073227 -5002945 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1493 549 40 0 0 chr9 119073254 119073328 -5002844 - B1_Mus2 SINE Alu -73 74 1 1 1493 276 222 0 14 chr9 119073521 119073594 -5002578 - Lx7 LINE L1 -15 7681 7610 1 1493 842 238 14 20 chr9 119075497 119075719 -5000453 - Lx7 LINE L1 -1008 6452 6225 1 1493 1520 123 41 16 chr9 119075748 119076096 -5000076 - RLTR1D LTR ERV1 0 605 149 1 1493 189 0 0 0 chr9 119076320 119076341 -4999831 + (TGG)n Simple_repeat Simple_repeat 1 21 0 1 1493 1304 238 119 8 chr9 119077244 119077412 -4998760 - MTD LTR MaLR -14 405 211 1 1493 1356 112 0 5 chr9 119077412 119077601 -4998571 - B2_Mm2 SINE B2 -7 188 1 1 1493 1304 238 119 8 chr9 119077601 119077793 -4998379 - MTD LTR MaLR -209 210 5 1 1493 1010 269 138 21 chr9 119077791 119078125 -4998047 - MTE2b LTR MaLR -6 373 1 1 1493 558 130 0 0 chr9 119079291 119079399 -4996773 + (GA)n Simple_repeat Simple_repeat 1 108 0 1 1493 1785 191 95 0 chr9 119080090 119080468 -4995704 + MTD LTR MaLR 4 417 -2 1 1493 1201 249 92 50 chr9 119080504 119080864 -4995308 + MTE2b LTR MaLR 3 377 -2 1 1493 318 50 0 0 chr9 119080967 119081007 -4995165 + (GTTTG)n Simple_repeat Simple_repeat 3 42 0 1 1493 733 301 83 5 chr9 119081546 119081750 -4994422 - B4A SINE B4 -71 221 2 1 1493 219 204 43 17 chr9 119082797 119082912 -4993260 + GA-rich Low_complexity Low_complexity 4 121 0 1 1493 1297 87 11 16 chr9 119084381 119084567 -4991605 + B2_Mm1a SINE B2 1 185 -8 1 1493 963 211 29 0 chr9 119084622 119084797 -4991375 + B3A SINE B2 2 181 -17 1 1493 572 323 34 57 chr9 119084980 119085331 -4990841 + RMER15-int LTR ERVL 475 817 -4182 1 1493 971 285 132 58 chr9 119085418 119085950 -4990222 + RMER15-int LTR ERVL 4317 4887 -112 1 1493 405 70 0 0 chr9 119086222 119086279 -4989893 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1493 999 290 15 11 chr9 119086284 119086556 -4989616 - B4 SINE B4 -18 274 2 1 1493 978 126 242 0 chr9 119089102 119089284 -4986888 - URR1A DNA MER1_type 0 226 1 1 1493 1193 57 0 0 chr9 119091172 119091312 -4984860 + B1_Mus1 SINE Alu 1 140 -8 1 1493 360 0 0 0 chr9 119091851 119091891 -4984281 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1493 535 348 49 46 chr9 119092110 119092414 -4983758 + ORR1E LTR MaLR 39 343 -16 1 1493 368 129 59 22 chr9 119092427 119092562 -4983610 + (TCTA)n Simple_repeat Simple_repeat 4 143 0 1 1493 993 320 110 7 chr9 119092590 119093055 -4983117 + L1MA6 LINE L1 5782 6294 -6 1 1493 276 331 38 30 chr9 119093112 119093243 -4982929 + MER94 DNA AcHobo 2 133 -1 1 1493 189 0 0 0 chr9 119093272 119093293 -4982879 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1493 674 259 118 11 chr9 119093389 119093576 -4982596 + B3 SINE B2 1 207 -9 1 1493 869 179 7 0 chr9 119093691 119093836 -4982336 + B1_Mus1 SINE Alu 1 146 -2 1 1493 284 297 92 46 chr9 119093960 119094133 -4982039 - B3A SINE B2 -16 182 2 1 1493 379 275 61 84 chr9 119094224 119094355 -4981817 + ID_B1 SINE B4 91 218 -6 1 1493 258 342 70 0 chr9 119094416 119094530 -4981642 + B4A SINE B4 38 159 -133 1 1493 321 82 0 0 chr9 119094647 119094696 -4981476 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1493 294 143 0 0 chr9 119094702 119094751 -4981421 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1493 937 164 14 0 chr9 119094751 119094897 -4981275 - B1_Mur2 SINE Alu 0 149 2 1 1493 322 413 19 0 chr9 119094917 119095072 -4981100 + L1MC LINE L1 2641 2798 -3348 1 1493 469 269 39 138 chr9 119095093 119095274 -4980898 + B3A SINE B2 26 188 -10 1 1493 280 228 0 17 chr9 119095388 119095446 -4980726 + PB1D9 SINE Alu 4 60 -60 1 1493 449 165 65 24 chr9 119095446 119095614 -4980558 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 1 1493 437 0 0 19 chr9 119095721 119095775 -4980397 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1493 331 267 212 50 chr9 119095859 119096222 -4979950 - L1MC3 LINE L1 -1551 6234 5813 1 1493 837 179 268 42 chr9 119096216 119096313 -4979859 - Lx9 LINE L1 -8 7636 7517 1 1493 396 0 0 0 chr9 119096313 119096357 -4979815 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1493 837 179 268 42 chr9 119096357 119096569 -4979603 - Lx9 LINE L1 -128 7516 7258 1 1493 317 320 20 20 chr9 119096573 119096723 -4979449 + Lx8 LINE L1 6876 7025 -448 1 1493 1098 22 79 22 chr9 119096774 119096913 -4979259 + B1_Mus2 SINE Alu 1 147 0 1 1493 186 118 0 0 chr9 119096913 119096947 -4979225 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1493 1173 71 0 0 chr9 119096958 119097099 -4979073 + B1_Mus1 SINE Alu 2 142 -6 1 1493 955 293 63 30 chr9 119097123 119097486 -4978686 - L1MC3 LINE L1 -1973 5812 5438 1 1493 527 147 10 0 chr9 119097544 119097646 -4978526 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 1 1493 405 302 72 42 chr9 119097729 119097895 -4978277 - B3A SINE B2 0 198 28 1 1493 1051 315 111 33 chr9 119097910 119098425 -4977747 - L1MC3 LINE L1 -876 5270 4709 1 1493 293 0 27 0 chr9 119098425 119098462 -4977710 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1493 1051 315 111 33 chr9 119098462 119098649 -4977523 - L1MC3 LINE L1 -1438 4708 4514 1 1493 21 0 0 0 chr9 119098720 119098741 -4977431 + AT_rich Low_complexity Low_complexity 1 21 0 1 1493 410 264 36 9 chr9 119098948 119099059 -4977113 + B1F1 SINE Alu 1 114 -35 1 1493 233 312 26 26 chr9 119098970 119099085 -4977087 - YREP_Mm Unknown Unknown -1518 294 180 1 1493 3351 54 0 34 chr9 119099730 119100148 -4976024 - MTB_Mm LTR MaLR 0 407 4 1 1493 388 51 0 33 chr9 119100644 119100705 -4975467 + (AGGGGG)n Simple_repeat Simple_repeat 4 62 0 1 1493 1105 44 73 0 chr9 119100996 119101132 -4975040 - B1_Mus2 SINE Alu 0 147 2 1 1493 267 136 0 0 chr9 119102058 119102117 -4974055 + (T)n Simple_repeat Simple_repeat 1 59 0 1 1493 1409 66 38 0 chr9 119105724 119105907 -4970265 + B2_Mm2 SINE B2 1 190 -5 1 1493 1223 48 0 0 chr9 119106146 119106292 -4969880 + B1_Mus1 SINE Alu 1 146 -2 1 1493 900 246 109 102 chr9 119106364 119106766 -4969406 - MTD LTR MaLR -14 405 1 1 1493 583 279 7 0 chr9 119106781 119106928 -4969244 - ID_B1 SINE B4 0 224 77 1 1493 360 284 31 47 chr9 119106924 119107053 -4969119 + MER119 DNA MER1_type 406 532 -51 1 1493 2643 76 0 13 chr9 119107360 119107733 -4968439 + MTB_Mm LTR MaLR 2 369 -38 1 1493 302 212 0 14 chr9 119108076 119108150 -4968022 - MTEa LTR MaLR -307 72 4 1 1493 245 263 12 50 chr9 119108672 119108752 -4967420 + MIR SINE MIR 73 149 -113 1 1493 441 0 0 0 chr9 119108881 119108930 -4967242 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1493 1005 269 60 37 chr9 119109848 119110196 -4965976 - MTD LTR MaLR -59 360 5 1 1493 2100 251 166 69 chr9 119110202 119110506 -4965666 - MTD-int LTR MaLR -4 1254 892 1 1493 306 0 0 0 chr9 119110506 119110540 -4965632 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1493 2100 251 166 69 chr9 119110540 119111378 -4964794 - MTD-int LTR MaLR -367 891 1 1 1493 678 325 100 28 chr9 119111385 119111705 -4964467 - MTD LTR MaLR -36 383 41 1 1493 1198 68 0 0 chr9 119111753 119111900 -4964272 - B1_Mus2 SINE Alu 0 147 1 1 1493 688 299 6 0 chr9 119112020 119112184 -4963988 - RSINE1 SINE B4 0 165 1 1 1493 647 267 40 7 chr9 119112851 119113002 -4963170 + RSINE1 SINE B4 6 161 -4 1 1493 348 147 0 0 chr9 119112997 119113065 -4963107 + RLTR44A LTR ERVK 353 405 0 2 1493 519 166 68 69 chr9 119113065 119113298 -4962874 + RLTR44-int LTR ERVK 820 941 -1871 2 1493 773 85 0 9 chr9 119113311 119113418 -4962754 + RLTR44-int LTR ERVK 874 979 -1833 2 1493 5100 45 0 2 chr9 119113729 119114329 -4961843 + RLTR44-int LTR ERVK 2214 2812 0 2 1493 2428 126 37 47 chr9 119114330 119114738 -4961434 + RLTR44A LTR ERVK 2 405 0 2 1493 518 214 149 22 chr9 119114783 119114917 -4961255 + B3 SINE B2 66 216 0 2 1493 602 254 8 0 chr9 119116065 119116195 -4959977 + URR1B DNA MER1_type 95 225 0 2 1493 236 234 29 59 chr9 119117576 119117712 -4958460 + (CATA)n Simple_repeat Simple_repeat 3 134 0 2 1493 352 307 52 35 chr9 119118368 119118540 -4957632 + ORR1E LTR MaLR 19 193 -166 2 1493 189 147 0 0 chr9 119118609 119118643 -4957529 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1493 2720 45 0 0 chr9 119118699 119119010 -4957162 - RLTR10E LTR ERVK 0 311 1 2 1493 1668 238 15 8 chr9 119119135 119119525 -4956647 - IAPEY3-int LTR ERVK -292 7388 6996 2 1493 1686 106 34 0 chr9 119119530 119119767 -4956405 - IAP-d-int LTR ERVK -1287 5255 5011 2 1493 804 208 6 11 chr9 119119753 119119928 -4956244 - IAP-d-int LTR ERVK -6022 520 347 2 1493 402 107 0 0 chr9 119119922 119119978 -4956194 - IAP-d-int LTR ERVK -6365 177 122 2 1493 251 236 14 0 chr9 119119978 119120050 -4956122 + CT-rich Low_complexity Low_complexity 3 75 0 2 1493 448 238 42 46 chr9 119120051 119120311 -4955861 - MMERVK10C-int LTR ERVK -6663 918 660 2 1493 576 279 0 0 chr9 119120308 119120455 -4955717 - MMERVK10C-int LTR ERVK -7157 424 278 2 1493 669 86 21 0 chr9 119120455 119120548 -4955624 - MMERVK10C-int LTR ERVK -7486 95 1 2 1493 2743 39 0 0 chr9 119120548 119120859 -4955313 - RLTR10E LTR ERVK 0 311 1 2 1493 3936 168 118 40 chr9 119120945 119121781 -4954391 + RMER19B LTR ERVK 1 902 0 2 1493 818 338 116 51 chr9 119121785 119122359 -4953813 + MTE-int LTR MaLR 46 686 -894 2 1493 1128 65 0 0 chr9 119122383 119122522 -4953650 + B1_Mus2 SINE Alu 1 139 -8 2 1493 201 39 0 0 chr9 119122522 119122548 -4953624 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1493 902 172 0 11 chr9 119122552 119122734 -4953438 + GA-rich Low_complexity Low_complexity 1 180 0 2 1493 590 308 109 84 chr9 119122825 119123072 -4953100 + MTE-int LTR MaLR 812 1056 -524 2 1493 4738 127 152 21 chr9 119123072 119123941 -4952231 - RLTR13C1 LTR ERVK 0 983 1 2 1493 590 308 109 84 chr9 119123941 119124086 -4952086 + MTE-int LTR MaLR 1057 1214 -366 2 1493 635 286 197 30 chr9 119124089 119124245 -4951927 - L1M2 LINE L1 -754 5546 5353 2 1493 3744 70 103 4 chr9 119124245 119124758 -4951414 - LTRIS2 LTR ERV1 0 564 1 2 1493 656 278 186 30 chr9 119124758 119125537 -4950635 - L1M2 LINE L1 -528 5352 4399 2 1493 4129 57 14 2 chr9 119125743 119126249 -4949923 - RLTR1B LTR ERV1 0 512 1 2 1493 1665 161 90 47 chr9 119126723 119126929 -4949243 - ORR1C2 LTR MaLR -3 381 171 2 1493 183 80 0 0 chr9 119126929 119126954 -4949218 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1493 249 57 0 0 chr9 119126954 119126989 -4949183 + (CAGAGA)n Simple_repeat Simple_repeat 4 38 0 2 1493 1665 161 90 47 chr9 119126989 119127146 -4949026 - ORR1C2 LTR MaLR -214 170 2 2 1493 1996 96 23 103 chr9 119127212 119127264 -4948908 - ORR1A4 LTR MaLR -8 321 286 2 1493 994 114 82 23 chr9 119127264 119127435 -4948737 - B2_Mm2 SINE B2 -14 181 1 2 1493 1996 96 23 103 chr9 119127435 119127731 -4948441 - ORR1A4 LTR MaLR -44 285 1 2 1493 451 286 79 46 chr9 119127954 119128170 -4948002 - RMER15 LTR ERVL -17 558 336 2 1493 243 314 35 55 chr9 119128290 119128435 -4947737 - Lx8 LINE L1 -299 7174 7033 2 1493 898 115 47 13 chr9 119128491 119128641 -4947531 + URR1A DNA MER1_type 72 226 0 2 1493 2423 290 77 17 chr9 119128641 119129104 -4947068 - MTEa-int LTR MaLR -724 856 353 2 1493 234 0 0 0 chr9 119129104 119129130 -4947042 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 2 1493 2423 290 77 17 chr9 119129130 119129474 -4946698 - MTEa-int LTR MaLR -1228 352 2 2 1493 829 241 208 29 chr9 119129481 119129793 -4946379 - MTEa LTR MaLR -11 368 1 2 1493 3971 118 125 23 chr9 119132995 119133691 -4942481 + RLTR13C1 LTR ERVK 192 958 -25 2 1493 18478 136 44 66 chr9 119133720 119135599 -4940573 + ETnERV2-int LTR ERVK 2 1849 -5557 2 1493 1267 41 0 0 chr9 119135599 119135744 -4940428 - B1_Mus2 SINE Alu -1 146 2 2 1493 18478 136 44 66 chr9 119135744 119136033 -4940139 + ETnERV2-int LTR ERVK 1850 2149 -5257 2 1493 1142 71 0 0 chr9 119136033 119136173 -4939999 + B1_Mus1 SINE Alu 4 143 -5 2 1493 184 30 61 0 chr9 119136178 119136211 -4939961 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1493 18478 136 44 66 chr9 119136211 119137061 -4939111 + ETnERV2-int LTR ERVK 2150 2949 -4457 2 1493 506 0 0 0 chr9 119137061 119137124 -4939048 - L1Md_T LINE L1 0 6582 6520 2 1493 18478 136 44 66 chr9 119137124 119137650 -4938522 + ETnERV2-int LTR ERVK 2950 3474 -3932 2 1493 1868 184 30 47 chr9 119137657 119138062 -4938110 + ETnERV2-int LTR ERVK 4397 4794 -1014 2 1493 4651 172 5 40 chr9 119138176 119139074 -4937098 + ETnERV2-int LTR ERVK 4852 5717 -91 2 1493 442 145 60 0 chr9 119139074 119139157 -4937015 + RLTR13D4 LTR ERVK 946 1033 0 2 1493 1425 299 68 15 chr9 119141323 119141853 -4934319 + Lx8 LINE L1 6590 7147 -326 2 1493 321 304 165 26 chr9 119141848 119141927 -4934245 + L1MA7 LINE L1 5717 5815 -476 2 1493 201 39 0 0 chr9 119141927 119141953 -4934219 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 1493 321 288 166 16 chr9 119141953 119142180 -4933992 + L1MA7 LINE L1 5816 6076 -224 2 1493 487 287 12 43 chr9 119142189 119142353 -4933819 + Lx8 LINE L1 7174 7332 -141 2 1493 1155 176 15 15 chr9 119142371 119142573 -4933599 + B3 SINE B2 2 203 -13 2 1493 223 178 0 0 chr9 119142870 119142915 -4933257 + T-rich Low_complexity Low_complexity 1 45 0 2 1493 396 0 0 0 chr9 119142961 119143005 -4933167 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1493 583 223 26 80 chr9 119143575 119143712 -4932460 + B1F SINE Alu 1 130 -19 2 1493 1999 184 41 29 chr9 119143712 119143907 -4932265 + MTC LTR MaLR 2 205 -216 2 1493 1237 20 14 7 chr9 119143907 119144054 -4932118 + B1_Mus1 SINE Alu 1 148 0 2 1493 1999 184 41 29 chr9 119144054 119144273 -4931899 + MTC LTR MaLR 206 420 -1 2 1493 583 223 26 80 chr9 119144273 119144286 -4931886 + B1F SINE Alu 131 143 -6 2 1493 375 210 12 12 chr9 119144293 119144375 -4931797 + RSINE1 SINE B4 38 119 -46 2 1493 333 0 0 0 chr9 119144400 119144437 -4931735 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 186 240 184 0 0 chr9 119144438 119144487 -4931685 + G-rich Low_complexity Low_complexity 2 50 0 2 1494 398 296 47 20 chr9 119144679 119144827 -4931345 - MER57C2 LTR ERV1 -26 408 257 2 1494 457 261 84 28 chr9 119144832 119145045 -4931127 + L1MC2 LINE L1 5004 5228 -918 2 1494 326 301 54 12 chr9 119145428 119145596 -4930576 + L1MC4a LINE L1 7702 7876 -6 2 1494 1176 248 149 54 chr9 119145577 119145741 -4930431 + L1MC2 LINE L1 5314 5485 -859 2 1494 1071 70 35 0 chr9 119145741 119145883 -4930289 + B1_Mus1 SINE Alu 2 148 0 2 1494 1176 248 149 54 chr9 119145883 119146269 -4929903 + L1MC2 LINE L1 5486 5916 -428 2 1494 222 236 127 0 chr9 119146301 119146356 -4929816 + ID4_ SINE ID 6 67 -16 2 1494 245 194 0 46 chr9 119146544 119146609 -4929563 + L1MC1 LINE L1 6272 6333 0 2 1494 603 99 292 18 chr9 119150642 119150755 -4925417 - B1_Mus1 SINE Alu 0 148 5 2 1494 332 267 0 125 chr9 119151269 119151389 -4924783 + PB1D7 SINE Alu 14 118 -2 2 1494 333 254 0 0 chr9 119152566 119152633 -4923539 + PB1D9 SINE Alu 24 90 -30 2 1494 1988 108 52 61 chr9 119152737 119153064 -4923108 + ORR1A3 LTR MaLR 3 326 0 2 1494 262 312 144 22 chr9 119153331 119153511 -4922661 + MIRb SINE MIR 1 202 -66 2 1494 192 326 79 50 chr9 119155033 119155172 -4921000 - MIRc SINE MIR -55 213 71 2 1494 1436 63 16 16 chr9 119155268 119155461 -4920711 - B2_Mm2 SINE B2 -2 193 1 2 1494 310 287 137 47 chr9 119155619 119155809 -4920363 + Charlie7 DNA MER1_type 287 493 -2119 2 1494 1251 259 161 22 chr9 119156679 119157231 -4918941 + L1_Rod LINE L1 5167 5795 -52 2 1494 210 105 0 0 chr9 119157776 119157814 -4918358 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1494 726 239 45 0 chr9 119157847 119158002 -4918170 + B3A SINE B2 4 165 -33 2 1494 360 0 0 0 chr9 119158005 119158045 -4918127 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2 1494 656 216 77 19 chr9 119158335 119158491 -4917681 + ID_B1 SINE B4 58 222 -2 2 1494 401 252 35 18 chr9 119158590 119158703 -4917469 + PB1D10 SINE Alu 1 115 -2 2 1494 363 258 144 0 chr9 119158707 119158839 -4917333 + L1M4 LINE L1 5594 5744 -430 2 1494 311 281 35 0 chr9 119158852 119158966 -4917206 + L1MB3 LINE L1 5829 5946 -237 2 1494 527 285 80 49 chr9 119159120 119159408 -4916764 - RLTR12B LTR ERVK -229 299 3 2 1494 675 121 0 0 chr9 119159409 119159508 -4916664 - B1_Mus1 SINE Alu -11 137 39 2 1494 520 293 111 11 chr9 119159531 119159721 -4916451 - ID_B1 SINE B4 -15 209 1 2 1494 554 197 103 0 chr9 119160596 119160713 -4915459 + B1_Mur1 SINE Alu 1 129 -20 2 1494 562 236 41 35 chr9 119160968 119161185 -4914987 + L1MA4 LINE L1 5695 5914 -386 2 1494 210 167 0 0 chr9 119161496 119161532 -4914640 + A-rich Low_complexity Low_complexity 4 39 0 2 1494 643 160 64 0 chr9 119162497 119162622 -4913550 + B1_Mur4 SINE Alu 18 150 0 2 1494 2500 162 77 85 chr9 119162879 119162925 -4913247 + RMER4B LTR ERVK 3 46 -539 2 1494 1190 78 72 6 chr9 119162925 119163105 -4913067 + B2_Mm2 SINE B2 2 193 -2 2 1494 2500 162 77 85 chr9 119163105 119163646 -4912526 + RMER4B LTR ERVK 47 585 0 2 1494 514 219 85 28 chr9 119164338 119164479 -4911693 - B1_Mur1 SINE Alu 0 149 1 2 1494 409 276 88 65 chr9 119164554 119164771 -4911401 + ID_B1 SINE B4 3 224 0 2 1494 861 188 64 25 chr9 119165160 119165362 -4910810 - B3 SINE B2 -5 211 2 2 1494 1059 204 186 2 chr9 119165417 119165893 -4910279 + Lx9 LINE L1 6569 7132 -512 2 1494 397 314 82 37 chr9 119165948 119166216 -4909956 - L1MB7 LINE L1 -2 6182 5903 2 1494 399 127 0 0 chr9 119166306 119166369 -4909803 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1494 210 105 0 0 chr9 119166375 119166413 -4909759 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1494 369 43 0 0 chr9 119166416 119166463 -4909709 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1494 227 321 0 152 chr9 119166847 119166946 -4909226 - PB1D10 SINE Alu -33 84 1 2 1494 467 312 11 55 chr9 119168793 119168976 -4907196 - B4 SINE B4 -93 199 25 2 1494 721 120 48 0 chr9 119169402 119169527 -4906645 + B1_Mur4 SINE Alu 2 132 -18 2 1494 24 32 0 0 chr9 119170222 119170253 -4905919 + AT_rich Low_complexity Low_complexity 1 31 0 2 1494 696 37 223 36 chr9 119170259 119170371 -4905801 - B1_Mus2 SINE Alu -12 135 3 2 1494 184 250 16 48 chr9 119170371 119170428 -4905744 + MER5B DNA MER1_type 114 170 -8 2 1494 407 287 116 27 chr9 119171473 119171810 -4904362 - L1MC4a LINE L1 -31 7851 7485 2 1494 316 232 96 48 chr9 119171873 119171977 -4904195 - L1MC4a LINE L1 -528 7467 7359 2 1494 369 308 35 6 chr9 119172900 119173070 -4903102 - MER2B DNA MER2_type 0 336 162 2 1494 1574 205 76 19 chr9 119174012 119174507 -4901665 + RMER4B LTR ERVK 17 578 -7 2 1494 930 255 64 17 chr9 119174546 119174781 -4901391 + B4A SINE B4 43 288 -4 2 1494 282 260 0 25 chr9 119174837 119174916 -4901256 + ID4_ SINE ID 2 78 -5 2 1494 775 74 0 39 chr9 119175322 119175449 -4900723 - B1_Mus2 SINE Alu -25 122 1 2 1494 277 231 122 49 chr9 119175341 119175464 -4900708 - B4A SINE B4 -98 194 63 2 1494 403 238 156 42 chr9 119176547 119176784 -4899388 + LTR53 LTR ERVL 136 399 -120 3 1494 211 333 67 0 chr9 119176998 119177103 -4899069 - PB1D10 SINE Alu -1 116 5 3 1494 709 141 165 0 chr9 119177128 119177249 -4898923 + B1_Mus2 SINE Alu 1 141 -6 3 1494 257 293 39 48 chr9 119178592 119178603 -4897569 + MT2B LTR ERVL 155 164 -437 3 1494 455 258 142 45 chr9 119178603 119178737 -4897435 + B1_Mur1 SINE Alu 1 147 0 3 1494 282 315 62 20 chr9 119178799 119178945 -4897227 + L1M3 LINE L1 5507 5658 -522 3 1494 279 253 101 22 chr9 119178949 119179038 -4897134 + PB1D10 SINE Alu 1 96 -21 3 1494 202 338 15 0 chr9 119179038 119179106 -4897066 + GA-rich Low_complexity Low_complexity 2 70 0 3 1494 360 311 11 118 chr9 119179841 119179924 -4896248 - B4A SINE B4 -1 291 230 3 1494 387 0 0 0 chr9 119179924 119179967 -4896205 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1494 360 311 11 118 chr9 119179967 119180069 -4896103 - B4A SINE B4 -63 229 126 3 1494 756 275 62 52 chr9 119180541 119180848 -4895324 - MTE2a LTR MaLR -10 369 60 3 1494 1665 161 63 23 chr9 119180848 119181242 -4894930 + RMER17C LTR ERVK 1 410 0 3 1494 250 175 70 0 chr9 119181385 119181442 -4894730 - MTE2a LTR MaLR -317 62 2 3 1494 387 273 4 41 chr9 119181735 119181870 -4894302 + B4A SINE B4 2 131 -161 3 1494 195 218 0 0 chr9 119181908 119181963 -4894209 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1494 329 263 62 10 chr9 119182438 119182534 -4893638 - PB1D10 SINE Alu -2 115 15 3 1494 224 190 0 33 chr9 119182612 119182672 -4893500 + (CATA)n Simple_repeat Simple_repeat 2 59 0 3 1494 294 229 102 19 chr9 119182762 119182908 -4893264 - L1MC2 LINE L1 -120 6224 6140 3 1494 442 255 129 13 chr9 119183350 119183505 -4892667 - L1MC3 LINE L1 -180 7605 7433 3 1494 1573 47 16 0 chr9 119183810 119184001 -4892171 + B2_Mm2 SINE B2 2 195 0 3 1494 1333 52 92 0 chr9 119184012 119184185 -4891987 + B2_Mm2 SINE B2 2 190 -5 3 1494 1175 50 0 0 chr9 119184201 119184340 -4891832 + B1_Mus2 SINE Alu 1 139 -8 3 1494 207 0 0 0 chr9 119184340 119184363 -4891809 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1494 279 223 50 60 chr9 119184619 119184719 -4891453 + RLTR13D3 LTR ERVK 885 1052 -62 3 1494 1010 168 96 0 chr9 119184793 119184910 -4891262 - Lx LINE L1 0 6654 6534 3 1494 234 91 0 0 chr9 119184910 119184943 -4891229 + (CTCA)n Simple_repeat Simple_repeat 2 34 0 3 1494 1010 224 68 48 chr9 119184943 119185120 -4891052 - Lx LINE L1 -121 6533 6294 3 1494 418 233 35 0 chr9 119185112 119185198 -4890974 - Lx LINE L1 -470 6166 6078 3 1494 1042 257 59 103 chr9 119185241 119185997 -4890175 + RMER17B LTR ERVK 253 899 -9 3 1494 5652 98 23 7 chr9 119186002 119187090 -4889082 - Lx LINE L1 -561 6093 4998 3 1494 763 157 30 0 chr9 119187330 119187464 -4888708 - B1_Mur4 SINE Alu -12 138 1 3 1494 582 204 15 8 chr9 119188082 119188215 -4887957 + B1_Mur1 SINE Alu 16 149 0 3 1494 1288 104 16 10 chr9 119188239 119188433 -4887739 + B2_Mm2 SINE B2 1 195 0 3 1494 319 219 71 30 chr9 119188772 119188871 -4887301 + RMER10B LTR ERVL 296 398 0 3 1494 656 192 13 46 chr9 119189062 119189215 -4886957 - B1_Mur4 SINE Alu -2 148 1 3 1494 230 367 55 9 chr9 119189217 119189327 -4886845 + MER5B DNA MER1_type 61 175 -3 3 1494 701 210 49 0 chr9 119189327 119189470 -4886702 + B3A SINE B2 2 151 -47 3 1494 438 36 0 0 chr9 119189652 119189708 -4886464 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1494 314 244 31 70 chr9 119189770 119189898 -4886274 + L1MCa LINE L1 1607 1729 -4779 3 1494 1238 271 35 53 chr9 119189969 119190480 -4885692 + RMER5 LTR ERV1 30 531 -3 3 1494 221 295 0 25 chr9 119190953 119191033 -4885139 + GA-rich Low_complexity Low_complexity 2 79 0 3 1494 774 32 0 0 chr9 119191255 119191348 -4884824 + (GGGA)n Simple_repeat Simple_repeat 4 96 0 3 1494 204 40 0 0 chr9 119191562 119191587 -4884585 + (TCC)n Simple_repeat Simple_repeat 2 26 0 3 1494 186 143 0 0 chr9 119191624 119191659 -4884513 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 3 1494 476 248 24 8 chr9 119191790 119191916 -4884256 + B3A SINE B2 8 135 -63 3 1494 237 159 0 0 chr9 119192389 119192433 -4883739 + (CATA)n Simple_repeat Simple_repeat 3 46 0 3 1494 1240 103 10 36 chr9 119192696 119192888 -4883284 + B2_Mm2 SINE B2 2 188 -7 3 1494 252 0 0 0 chr9 119193284 119193312 -4882860 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 3 1494 744 187 7 7 chr9 119193313 119193453 -4882719 - B1_Mur2 SINE Alu -9 140 1 3 1494 683 225 110 57 chr9 119194233 119194641 -4881531 + MT2A LTR ERVL 8 593 -8 3 1494 315 85 0 0 chr9 119195320 119195367 -4880805 + (CCA)n Simple_repeat Simple_repeat 1 47 0 3 1494 522 241 84 24 chr9 119195369 119195535 -4880637 + RMER15-int LTR ERVL 1537 1712 -3287 3 1494 333 226 108 0 chr9 119195648 119195750 -4880422 + B1_Mus1 SINE Alu 35 147 -1 3 1494 434 250 95 0 chr9 119196264 119196380 -4879792 + B1F SINE Alu 15 141 -8 3 1494 180 0 0 0 chr9 119196401 119196421 -4879751 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 3 1494 620 195 28 14 chr9 119196479 119196625 -4879547 + B1_Mur4 SINE Alu 2 150 0 3 1494 620 216 283 8 chr9 119196685 119196938 -4879234 - MTC LTR MaLR -1 420 98 3 1494 738 179 15 0 chr9 119196936 119197070 -4879102 + B1_Mur4 SINE Alu 7 142 -8 3 1494 513 0 0 0 chr9 119197073 119197130 -4879042 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1494 341 238 25 12 chr9 119197147 119197228 -4878944 - MTC LTR MaLR -339 82 1 3 1494 513 275 108 31 chr9 119197660 119197855 -4878317 + ID_B1 SINE B4 12 221 -3 3 1494 829 216 75 25 chr9 119198064 119198263 -4877909 + B3 SINE B2 4 212 -4 3 1494 354 169 0 0 chr9 119199189 119199254 -4876918 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1494 226 226 32 11 chr9 119199381 119199475 -4876697 + (TA)n Simple_repeat Simple_repeat 1 96 0 3 1494 587 259 45 124 chr9 119200892 119201157 -4875015 + B4 SINE B4 3 246 -46 3 1494 252 296 45 90 chr9 119201294 119201383 -4874789 - B1F SINE Alu -64 85 1 3 1494 607 290 50 10 chr9 119201396 119201598 -4874574 - B3 SINE B2 -5 211 2 3 1494 234 352 40 53 chr9 119201646 119201796 -4874376 - RSINE1 SINE B4 -15 150 3 3 1494 215 93 23 0 chr9 119201891 119201934 -4874238 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 3 1494 1152 120 27 0 chr9 119201939 119202122 -4874050 + B2_Mm2 SINE B2 2 189 -6 3 1494 1270 34 0 0 chr9 119202348 119202495 -4873677 - B1_Mus2 SINE Alu 0 147 1 3 1494 3622 24 2 5 chr9 119202847 119203266 -4872906 - L1Md_F2 LINE L1 0 6582 6165 3 1494 661 169 8 33 chr9 119203359 119203481 -4872691 - B1_Mur1 SINE Alu -2 147 29 3 1494 853 158 30 0 chr9 119203925 119204058 -4872114 + B1_Mus1 SINE Alu 2 138 -10 3 1494 210 143 0 0 chr9 119204709 119204744 -4871428 + (CAT)n Simple_repeat Simple_repeat 2 36 0 3 1494 246 280 148 23 chr9 119204979 119205071 -4871101 + B1F1 SINE Alu 4 108 -41 3 1494 1107 168 69 0 chr9 119205071 119205273 -4870899 - B3 SINE B2 0 216 1 3 1494 246 280 148 23 chr9 119205273 119205308 -4870864 + B1F1 SINE Alu 109 146 -3 3 1494 231 292 30 15 chr9 119205340 119205406 -4870766 + ID4_ SINE ID 1 67 -16 3 1494 216 260 0 0 chr9 119205425 119205475 -4870697 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1494 445 269 140 23 chr9 119205513 119205684 -4870488 - B3A SINE B2 -7 191 1 3 1494 183 344 0 15 chr9 119205753 119205818 -4870354 + L2a LINE L2 3358 3421 -5 3 1494 556 260 74 42 chr9 119206805 119206994 -4869178 + B3A SINE B2 2 196 -2 3 1494 545 227 42 21 chr9 119207024 119207168 -4869004 + B1_Mur1 SINE Alu 2 148 -1 3 1494 502 96 38 9 chr9 119207500 119207605 -4868567 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1494 270 218 18 0 chr9 119207786 119207841 -4868331 + tRNA-Ala-GCY_ tRNA tRNA 9 64 -11 3 1494 237 347 14 0 chr9 119207841 119207858 -4868314 + BC1_Mm scRNA scRNA 15 87 -65 3 1494 342 250 19 0 chr9 119208336 119208439 -4867733 - B1_Mus2 SINE Alu -7 113 6 3 1494 287 310 19 96 chr9 119208356 119208513 -4867659 - ID_B1 SINE B4 -55 169 25 3 1494 882 103 15 0 chr9 119208569 119208705 -4867467 - B1_Mur3 SINE Alu -3 146 9 3 1494 727 184 201 27 chr9 119208737 119208921 -4867251 - B3 SINE B2 0 216 1 3 1494 203 173 19 37 chr9 119209212 119209266 -4866906 + A-rich Low_complexity Low_complexity 1 53 0 3 1494 667 107 18 0 chr9 119209282 119209394 -4866778 + B1_Mus2 SINE Alu 34 147 0 3 1494 433 329 66 0 chr9 119209455 119209622 -4866550 + B4 SINE B4 49 226 -66 3 1494 718 232 75 11 chr9 119209625 119209812 -4866360 + B3 SINE B2 7 205 -11 3 1494 347 335 38 6 chr9 119209941 119210100 -4866072 - Lx9 LINE L1 -1678 5966 5803 3 1494 2007 149 31 8 chr9 119210407 119210758 -4865414 + ORR1B2 LTR MaLR 1 359 -8 3 1494 256 363 20 0 chr9 119210767 119210869 -4865303 - ID_B1 SINE B4 -16 208 105 3 1494 758 218 114 0 chr9 119210932 119211125 -4865047 - B3 SINE B2 -1 215 1 3 1494 204 64 20 41 chr9 119211169 119211218 -4864954 + (TTTTTG)n Simple_repeat Simple_repeat 3 50 0 3 1494 1021 52 0 0 chr9 119211219 119211353 -4864819 - B1_Mm SINE Alu 0 147 14 3 1494 433 203 75 95 chr9 119211221 119211368 -4864804 - B4 SINE B4 -69 223 80 3 1494 219 103 0 0 chr9 119211847 119211886 -4864286 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1494 351 309 61 38 chr9 119211903 119212034 -4864138 - RSINE1 SINE B4 -6 159 26 3 1494 569 270 98 39 chr9 119212080 119212284 -4863888 - B3 SINE B2 0 216 1 3 1494 294 340 38 83 chr9 119212511 119212528 -4863644 + B4 SINE B4 69 218 -74 4 1494 597 256 2 8 chr9 119212528 119212668 -4863504 + B1_Mus1 SINE Alu 1 140 -8 4 1494 383 172 0 0 chr9 119212711 119212775 -4863397 - B1F1 SINE Alu -3 146 83 4 1494 294 219 82 0 chr9 119212900 119212973 -4863199 + B4 SINE B4 53 131 -161 4 1494 317 252 26 70 chr9 119212987 119213102 -4863070 + B4A SINE B4 183 292 0 4 1494 231 307 46 65 chr9 119213117 119213225 -4862947 + B4 SINE B4 45 150 -142 4 1494 233 281 19 160 chr9 119213146 119213252 -4862920 + MT2B LTR ERVL 149 239 -362 4 1494 569 217 7 110 chr9 119213170 119213325 -4862847 + B1_Mur2 SINE Alu 11 149 0 4 1494 22 56 0 0 chr9 119213791 119213827 -4862345 + AT_rich Low_complexity Low_complexity 1 36 0 4 1494 535 219 24 42 chr9 119214181 119214348 -4861824 + RSINE1 SINE B4 2 165 0 4 1494 467 305 47 23 chr9 119214919 119215134 -4861038 + L1MDb LINE L1 736 955 -5454 4 1494 428 218 41 106 chr9 119215151 119215274 -4860898 + ID_B1 SINE B4 110 224 0 4 1494 1240 34 0 0 chr9 119215291 119215437 -4860735 + B1_Mus1 SINE Alu 3 148 0 4 1494 599 206 30 15 chr9 119215467 119215600 -4860572 + RSINE1 SINE B4 2 136 -29 4 1494 1199 52 114 17 chr9 119215879 119216055 -4860117 + B2_Mm2 SINE B2 2 194 -1 4 1494 605 190 307 0 chr9 119216386 119216549 -4859623 + B3 SINE B2 2 214 -2 4 1494 211 361 82 0 chr9 119216589 119216711 -4859461 + ID_B1 SINE B4 79 210 -14 4 1494 276 175 0 0 chr9 119216725 119216788 -4859384 + GA-rich Low_complexity Low_complexity 3 65 0 4 1494 598 125 18 0 chr9 119216915 119217027 -4859145 + (TA)n Simple_repeat Simple_repeat 2 115 0 4 1494 329 272 107 107 chr9 119217030 119217293 -4858879 + L1MB7 LINE L1 5777 6039 -145 4 1494 1331 93 22 0 chr9 119217347 119217530 -4858642 - B2_Mm2 SINE B2 -7 188 2 4 1494 942 55 53 45 chr9 119217560 119217693 -4858479 + B1_Mus1 SINE Alu 1 134 -14 4 1494 621 210 50 14 chr9 119217729 119217869 -4858303 + B1_Mur3 SINE Alu 3 147 -2 4 1494 617 285 113 66 chr9 119219735 119219932 -4856240 + B4A SINE B4 4 223 -69 4 1494 1754 16 0 0 chr9 119219932 119220125 -4856047 + B2_Mm1a SINE B2 1 193 0 4 1494 617 285 113 66 chr9 119220125 119220201 -4855971 + B4A SINE B4 224 290 -2 4 1494 996 216 44 20 chr9 119220235 119220438 -4855734 - B3 SINE B2 -7 209 2 4 1494 379 281 45 30 chr9 119220945 119221077 -4855095 + B1F1 SINE Alu 16 149 0 4 1494 300 267 86 8 chr9 119221157 119221171 -4855001 + B4A SINE B4 71 93 -199 4 1494 579 229 29 0 chr9 119221171 119221311 -4854861 + B1_Mur1 SINE Alu 1 144 -5 4 1494 836 162 0 69 chr9 119221331 119221490 -4854682 + B1_Mur3 SINE Alu 1 148 -1 4 1494 713 110 0 41 chr9 119221552 119221675 -4854497 - B1_Mur4 SINE Alu 0 150 33 4 1494 1374 68 5 77 chr9 119221889 119222097 -4854075 + B2_Mm1a SINE B2 1 193 0 4 1494 870 200 76 17 chr9 119222705 119222937 -4853235 - ORR1D1 LTR MaLR -131 239 1 4 1494 237 250 92 0 chr9 119222937 119223013 -4853159 + RSINE1 SINE B4 83 165 0 4 1494 211 367 116 0 chr9 119223050 119223265 -4852907 + L2a LINE L2 2918 3157 -269 4 1494 192 360 40 13 chr9 119223378 119223454 -4852718 + L2a LINE L2 3296 3373 -14 4 1494 521 189 47 0 chr9 119223740 119223867 -4852305 + B3 SINE B2 84 216 0 4 1494 285 158 0 50 chr9 119224007 119224067 -4852105 - B4A SINE B4 -142 150 94 4 1494 378 102 0 0 chr9 119224016 119224075 -4852097 - B1_Mur4 SINE Alu -90 60 2 4 1494 1147 93 48 16 chr9 119224075 119224261 -4851911 - B2_Mm2 SINE B2 -2 193 2 4 1494 295 217 83 104 chr9 119225251 119225395 -4850777 + B4A SINE B4 1 141 -151 4 1494 615 172 115 15 chr9 119225590 119225720 -4850452 + B1_Mur1 SINE Alu 2 144 -5 4 1494 204 250 0 0 chr9 119225723 119225787 -4850385 + A-rich Low_complexity Low_complexity 1 64 0 4 1494 679 255 56 9 chr9 119226048 119226227 -4849945 - B3A SINE B2 -4 191 3 4 1494 342 0 0 0 chr9 119226526 119226564 -4849608 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1494 329 283 48 26 chr9 119226611 119226800 -4849372 + L1MB7 LINE L1 4939 5131 -1015 4 1494 253 188 89 190 chr9 119226810 119226968 -4849204 + B4A SINE B4 78 219 -73 4 1494 572 202 0 88 chr9 119226835 119226971 -4849201 + B1F2 SINE Alu 21 144 -5 4 1494 21 0 0 0 chr9 119226971 119226992 -4849180 + AT_rich Low_complexity Low_complexity 1 21 0 4 1494 361 202 17 103 chr9 119226992 119227006 -4849166 + MT2B LTR ERVL 152 155 -446 4 1494 702 182 16 0 chr9 119227006 119227127 -4849045 + B1_Mur2 SINE Alu 1 123 -26 4 1494 1463 48 21 0 chr9 119227148 119227336 -4848836 - B2_Mm1a SINE B2 0 193 2 4 1494 241 304 25 12 chr9 119227357 119227437 -4848735 + GA-rich Low_complexity Low_complexity 2 82 0 4 1494 542 243 69 47 chr9 119227717 119227993 -4848179 + L1MB7 LINE L1 5477 5758 -420 4 1494 987 267 45 27 chr9 119228025 119228360 -4847812 + L1MB7 LINE L1 5828 6168 -16 4 1494 546 239 62 12 chr9 119228349 119228573 -4847599 + L1MB7 LINE L1 5845 6093 -86 4 1494 692 229 29 87 chr9 119228619 119228825 -4847347 - B3A SINE B2 -1 197 4 4 1494 275 164 54 18 chr9 119229392 119229448 -4846724 - RSINE1 SINE B4 -69 96 39 4 1494 488 281 73 41 chr9 119229576 119229795 -4846377 + B4A SINE B4 1 226 -66 4 1494 1004 68 0 36 chr9 119229798 119229936 -4846236 + B1_Mus2 SINE Alu 1 133 -14 4 1494 21 36 0 0 chr9 119231579 119231607 -4844565 + GC_rich Low_complexity Low_complexity 1 28 0 4 1494 1356 78 16 5 chr9 119232665 119232857 -4843315 + B2_Mm2 SINE B2 2 195 0 4 1494 216 0 0 0 chr9 119233486 119233510 -4842662 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1494 1236 98 33 0 chr9 119233572 119233756 -4842416 + B2_Mm2 SINE B2 2 191 -4 4 1494 210 91 0 52 chr9 119233902 119233960 -4842212 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 4 1494 617 85 10 31 chr9 119233960 119234057 -4842115 - B1_Mm SINE Alu 0 147 53 4 1494 260 350 78 18 chr9 119234290 119234456 -4841716 - LTR16C LTR ERVL -14 475 300 4 1494 882 146 35 0 chr9 119234484 119234628 -4841544 + B1_Mur4 SINE Alu 1 149 -1 4 1494 633 119 0 0 chr9 119234629 119234730 -4841442 + (GAAA)n Simple_repeat Simple_repeat 1 101 0 4 1494 1162 70 6 0 chr9 119234735 119234893 -4841279 + B2_Mm1a SINE B2 2 160 -33 4 1494 300 27 0 0 chr9 119234893 119234930 -4841242 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 4 1494 409 39 0 0 chr9 119234930 119234982 -4841190 + B2_Mm1a SINE B2 109 160 -33 4 1494 297 0 0 0 chr9 119234982 119235015 -4841157 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 4 1494 488 72 0 78 chr9 119235015 119235105 -4841067 + B2_Mm1a SINE B2 109 191 -2 4 1494 540 0 0 0 chr9 119235119 119235179 -4840993 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 4 1494 307 304 0 0 chr9 119235739 119235827 -4840345 - ID4_ SINE ID -57 95 8 4 1494 2295 73 26 35 chr9 119236433 119236470 -4839702 + MT2C_Mm LTR ERVL 1 36 -439 4 1494 1614 16 0 0 chr9 119236470 119236656 -4839516 - B2_Mm1a SINE B2 -7 186 1 4 1494 2295 73 26 35 chr9 119236656 119236959 -4839213 + MT2C_Mm LTR ERVL 37 338 -137 4 1494 514 248 67 15 chr9 119237080 119237215 -4838957 + ID_B1 SINE B4 80 221 -3 4 1494 251 260 0 27 chr9 119237227 119237302 -4838870 + ID_B1 SINE B4 152 224 0 4 1494 555 236 76 0 chr9 119237330 119237474 -4838698 + MTD LTR MaLR 237 391 -28 4 1494 243 0 0 0 chr9 119237493 119237520 -4838652 + (GGCTG)n Simple_repeat Simple_repeat 1 27 0 4 1494 306 0 0 0 chr9 119237552 119237586 -4838586 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1494 317 350 95 26 chr9 119237586 119237850 -4838322 + L1M5 LINE L1 5430 5711 -529 4 1494 305 279 110 52 chr9 119238017 119238042 -4838130 + ID_B1 SINE B4 81 104 -120 4 1494 1984 146 109 45 chr9 119238042 119238438 -4837734 - MTC LTR MaLR 0 421 1 4 1494 305 279 110 52 chr9 119238438 119238548 -4837624 + ID_B1 SINE B4 105 224 0 4 1494 912 215 49 15 chr9 119238859 119239062 -4837110 - B3 SINE B2 -6 210 1 4 1494 364 356 97 24 chr9 119239108 119239439 -4836733 - ERVL-E-int LTR ERVL -1557 4110 3756 4 1494 579 138 174 0 chr9 119239439 119239548 -4836624 + RMER13A LTR ERVK 1 128 -732 4 1494 413 149 0 0 chr9 119239546 119239613 -4836559 - RMER13A LTR ERVK -793 67 1 4 1494 255 307 22 86 chr9 119240099 119240238 -4835934 - LTR33 LTR ERVL -11 504 375 4 1494 2090 89 3 151 chr9 119240887 119241193 -4834979 + ORR1A2 LTR MaLR 1 288 -39 4 1494 1072 77 0 7 chr9 119241193 119241337 -4834835 + B1_Mm SINE Alu 5 147 0 4 1494 2090 89 3 151 chr9 119241337 119241414 -4834758 + ORR1A2 LTR MaLR 289 327 0 4 1494 258 32 0 0 chr9 119241764 119241795 -4834377 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1494 198 0 0 0 chr9 119242006 119242028 -4834144 + (CACAG)n Simple_repeat Simple_repeat 4 25 0 4 1494 26 30 0 0 chr9 119242258 119242291 -4833881 + AT_rich Low_complexity Low_complexity 1 33 0 4 1494 220 221 38 19 chr9 119242686 119242792 -4833380 + (TGAG)n Simple_repeat Simple_repeat 4 111 0 4 1494 295 264 71 77 chr9 119242926 119243094 -4833078 + RLTR25A LTR ERVK 937 1103 0 4 1494 1097 199 5 23 chr9 119243122 119243338 -4832834 + B3 SINE B2 2 213 -3 4 1494 727 213 0 22 chr9 119244243 119244382 -4831790 + B1_Mur2 SINE Alu 3 138 -11 4 1494 198 0 0 0 chr9 119244382 119244404 -4831768 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1494 297 299 49 3 chr9 119244414 119244524 -4831648 - AluG_3 SINE Alu -97 214 1 4 1494 218 275 101 0 chr9 119244712 119244781 -4831391 + ID SINE ID 5 80 -144 4 1494 247 339 57 33 chr9 119245576 119245698 -4830474 + YREP_Mm Unknown Unknown 170 294 -1518 4 1494 681 211 0 0 chr9 119245589 119245712 -4830460 - ID_B1 SINE B4 -12 212 90 5 1494 389 280 40 0 chr9 119247493 119247593 -4828579 - MIRb SINE MIR -74 194 91 5 1494 1038 87 120 17 chr9 119247953 119248128 -4828044 + B2_Mm1t SINE B2 1 193 0 5 1494 865 118 0 7 chr9 119251157 119251293 -4824879 + URR1B DNA MER1_type 38 172 -53 5 1494 1315 80 37 0 chr9 119254071 119254258 -4821914 - B2_Mm2 SINE B2 -1 194 1 5 1494 1080 130 0 0 chr9 119255872 119256210 -4819962 + (CA)n Simple_repeat Simple_repeat 1 338 0 5 1494 325 235 11 100 chr9 119257306 119257396 -4818776 + RSINE1 SINE B4 82 163 -2 5 1494 313 302 85 8 chr9 119259824 119259954 -4816218 - RMER15 LTR ERVL 0 575 436 5 1494 203 180 0 39 chr9 119260840 119260866 -4815306 + T-rich Low_complexity Low_complexity 27 51 0 5 1494 1136 75 116 0 chr9 119260866 119261039 -4815133 - B2_Mm1t SINE B2 0 193 1 5 1494 203 180 0 39 chr9 119261039 119261051 -4815121 + T-rich Low_complexity Low_complexity 15 26 0 5 1494 1430 67 0 5 chr9 119261051 119261247 -4814925 - B2_Mm2 SINE B2 0 195 1 5 1494 203 180 0 39 chr9 119261247 119261259 -4814913 + T-rich Low_complexity Low_complexity 3 14 0 5 1494 212 163 0 0 chr9 119261491 119261534 -4814638 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 1494 184 30 29 29 chr9 119261826 119261860 -4814312 + (TTA)n Simple_repeat Simple_repeat 2 35 0 5 1494 688 159 118 29 chr9 119261863 119261999 -4814173 - B1_Mur3 SINE Alu 0 149 2 5 1494 336 248 119 42 chr9 119262032 119262150 -4814022 + ID_B1 SINE B4 81 207 -17 5 1494 872 206 92 52 chr9 119262182 119262454 -4813718 + Lx7 LINE L1 7414 7696 0 5 1494 321 209 120 80 chr9 119262503 119262628 -4813544 + B3A SINE B2 3 132 -66 5 1494 225 289 50 30 chr9 119262649 119262749 -4813423 - YREP_Mm Unknown Unknown -1486 326 225 5 1494 383 240 120 37 chr9 119262677 119262785 -4813387 + B1F SINE Alu 20 136 -13 5 1494 1116 102 57 0 chr9 119263469 119263646 -4812526 + B2_Mm2 SINE B2 1 187 -8 5 1494 234 286 75 34 chr9 119263804 119263897 -4812275 - ID2 SINE ID -52 100 3 5 1494 424 198 0 0 chr9 119263955 119264036 -4812136 - B3A SINE B2 -117 81 1 5 1494 432 286 71 0 chr9 119264067 119264207 -4811965 + RSINE1 SINE B4 5 154 -11 5 1494 349 304 39 19 chr9 119264446 119264550 -4811622 + MLT1A LTR MaLR 201 306 -68 5 1494 288 315 9 18 chr9 119264857 119264970 -4811202 + L2 LINE L2 2331 2442 -977 5 1494 582 213 0 0 chr9 119265092 119265200 -4810972 - B1_Mur2 SINE Alu -8 141 34 5 1494 621 265 0 0 chr9 119265412 119265544 -4810628 + ID_B1 SINE B4 82 213 -11 5 1494 284 282 64 0 chr9 119265560 119265638 -4810534 + PB1D10 SINE Alu 2 84 -33 5 1494 209 161 0 0 chr9 119265684 119265715 -4810457 + polypurine Low_complexity Low_complexity 3 33 0 5 1494 323 241 12 12 chr9 119265737 119265817 -4810355 - PB1D10 SINE Alu -2 115 36 5 1494 27 29 0 0 chr9 119265817 119265851 -4810321 + AT_rich Low_complexity Low_complexity 1 34 0 5 1494 216 97 0 0 chr9 119265900 119265931 -4810241 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 5 1494 263 217 0 138 chr9 119265941 119266021 -4810151 - B1F1 SINE Alu -7 142 74 5 1494 738 199 0 14 chr9 119266046 119266189 -4809983 - B1_Mur2 SINE Alu -8 141 1 5 1494 1096 49 0 0 chr9 119266266 119266408 -4809764 - B1_Mus1 SINE Alu 0 148 7 5 1494 545 226 85 73 chr9 119266271 119266448 -4809724 - B4 SINE B4 -71 221 43 5 1494 368 215 0 0 chr9 119266408 119266473 -4809699 - PB1D10 SINE Alu -29 88 24 5 1494 648 226 7 28 chr9 119267108 119267249 -4808923 - B1_Mur1 SINE Alu 0 149 12 5 1494 384 294 7 52 chr9 119267113 119267267 -4808905 - ID_B1 SINE B4 -1 223 77 5 1494 468 0 0 0 chr9 119267777 119267829 -4808343 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1494 616 135 36 0 chr9 119267846 119267957 -4808215 - L1_Mur3 LINE L1 -2772 3108 2994 5 1494 250 238 0 0 chr9 119267957 119267975 -4808197 + T-rich Low_complexity Low_complexity 46 63 0 5 1494 1008 83 0 20 chr9 119267975 119268123 -4808049 - B1_Mus2 SINE Alu 0 147 3 5 1494 250 238 0 0 chr9 119268123 119268167 -4808005 + T-rich Low_complexity Low_complexity 2 45 0 5 1494 1118 163 33 19 chr9 119268556 119268769 -4807403 - B3 SINE B2 0 216 1 5 1494 565 135 0 0 chr9 119268920 119269016 -4807156 + B1_Mus1 SINE Alu 1 96 -52 5 1494 329 75 36 48 chr9 119269309 119269393 -4806779 + T-rich Low_complexity Low_complexity 2 84 0 5 1494 375 283 53 0 chr9 119269395 119269508 -4806664 - PB1D7 SINE Alu -1 119 1 5 1494 22 0 0 0 chr9 119269513 119269535 -4806637 + AT_rich Low_complexity Low_complexity 1 22 0 5 1494 877 185 75 20 chr9 119269837 119270036 -4806136 + B3 SINE B2 3 212 -4 5 1494 755 183 28 7 chr9 119270435 119270578 -4805594 - B1_Mus2 SINE Alu -1 146 1 5 1494 186 43 0 0 chr9 119270583 119270606 -4805566 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1494 594 207 43 0 chr9 119270613 119270729 -4805443 - ID_B1 SINE B4 0 224 104 5 1494 497 252 150 0 chr9 119270729 119270876 -4805296 - ID_B1 SINE B4 -53 171 3 5 1494 23 33 0 0 chr9 119271239 119271269 -4804903 + AT_rich Low_complexity Low_complexity 1 30 0 5 1494 496 275 109 21 chr9 119271759 119271952 -4804220 - ID_B1 SINE B4 -13 211 2 5 1494 262 277 0 0 chr9 119272314 119272379 -4803793 + ID_B1 SINE B4 86 150 -74 5 1494 631 262 34 17 chr9 119272372 119272547 -4803625 + RLTR18B LTR ERVK 13 190 -322 5 1494 834 277 44 117 chr9 119272552 119272936 -4803236 + RLTR18 LTR ERVK 121 616 0 5 1494 334 169 46 0 chr9 119272936 119273001 -4803171 + B1F SINE Alu 82 149 0 5 1494 657 211 80 20 chr9 119273003 119273153 -4803019 + B3A SINE B2 2 160 -38 5 1494 264 111 0 0 chr9 119273159 119273204 -4802968 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1494 1245 91 0 11 chr9 119273222 119273399 -4802773 + B2_Mm2 SINE B2 2 176 -19 5 1494 389 180 0 11 chr9 119273796 119273886 -4802286 + CT-rich Low_complexity Low_complexity 3 91 0 5 1494 502 117 0 0 chr9 119273893 119273970 -4802202 - B1_Mur3 SINE Alu -7 142 66 5 1494 282 210 0 16 chr9 119274089 119274152 -4802020 + ID_B1 SINE B4 159 220 -4 5 1494 225 296 13 66 chr9 119274161 119274237 -4801935 + ID2 SINE ID 2 73 -10 5 1494 514 228 78 130 chr9 119274394 119274586 -4801586 - B3A SINE B2 -16 182 1 5 1494 399 318 23 0 chr9 119274859 119274991 -4801181 - RSINE1 SINE B4 0 165 31 5 1495 615 247 31 38 chr9 119275528 119275688 -4800484 - B4 SINE B4 -52 240 82 5 1495 452 194 21 21 chr9 119275744 119275839 -4800333 - B3 SINE B2 -117 99 5 5 1495 1049 207 34 19 chr9 119275861 119276068 -4800104 - B3 SINE B2 0 216 7 5 1495 380 191 11 35 chr9 119276083 119276170 -4800002 - B4 SINE B4 -207 85 1 5 1495 356 249 73 90 chr9 119277665 119277823 -4798349 + B3A SINE B2 9 165 -51 5 1495 357 24 0 0 chr9 119277823 119277865 -4798307 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1495 331 281 54 117 chr9 119277865 119277928 -4798244 + B3 SINE B2 166 216 0 5 1495 635 269 90 20 chr9 119278033 119278234 -4797938 + B3 SINE B2 1 215 -1 5 1495 1174 34 0 7 chr9 119278268 119278415 -4797757 - B1_Mm SINE Alu -1 146 1 5 1495 318 252 228 37 chr9 119278914 119279050 -4797122 + RSINE1 SINE B4 2 163 -2 5 1495 616 234 27 20 chr9 119279377 119279525 -4796647 - ID_B1 SINE B4 0 224 76 5 1495 297 0 0 0 chr9 119279543 119279576 -4796596 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1495 893 54 69 8 chr9 119279576 119279706 -4796466 - B1_Mm SINE Alu -9 138 1 5 1495 388 264 120 0 chr9 119279715 119279840 -4796332 - B1_Mm SINE Alu -7 140 1 5 1495 1011 119 32 26 chr9 119279866 119279891 -4796281 - B2_Mm2 SINE B2 -4 191 167 5 1495 1074 76 14 0 chr9 119279891 119280035 -4796137 + B1_Mus1 SINE Alu 2 147 -1 5 1495 1011 119 32 26 chr9 119280035 119280199 -4795973 - B2_Mm2 SINE B2 -29 166 1 5 1495 377 275 6 0 chr9 119280727 119280905 -4795267 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1495 288 256 0 0 chr9 119280885 119280971 -4795201 + (TATG)n Simple_repeat Simple_repeat 1 86 0 5 1495 345 365 34 29 chr9 119281132 119281338 -4794834 - MLT1F1 LTR MaLR -20 549 343 5 1495 198 103 0 0 chr9 119281400 119281429 -4794743 + (AGGGGG)n Simple_repeat Simple_repeat 5 33 0 5 1495 247 304 43 0 chr9 119281646 119281738 -4794434 - ID_B1 SINE B4 -1 223 128 5 1495 615 228 0 82 chr9 119281856 119282014 -4794158 - B1F1 SINE Alu 0 149 5 5 1495 269 260 0 27 chr9 119282127 119282202 -4793970 - MLT1A1 LTR MaLR 0 408 336 5 1495 519 286 98 0 chr9 119282203 119282406 -4793766 + ID_B1 SINE B4 1 223 -1 5 1495 437 305 66 44 chr9 119282521 119282703 -4793469 + B3A SINE B2 30 215 -1 5 1495 37 0 0 0 chr9 119282706 119282743 -4793429 + AT_rich Low_complexity Low_complexity 1 37 0 5 1495 592 262 113 11 chr9 119283051 119283236 -4792936 + B3 SINE B2 2 205 -11 5 1495 594 75 0 0 chr9 119283603 119283683 -4792489 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1495 558 170 37 135 chr9 119284002 119284165 -4792007 - B1_Mur1 SINE Alu -2 147 1 5 1495 480 194 48 0 chr9 119284397 119284500 -4791672 + B1_Mur1 SINE Alu 40 147 -2 5 1495 578 195 86 0 chr9 119285412 119285540 -4790632 - B1F SINE Alu -3 146 8 5 1495 238 193 105 0 chr9 119285489 119285546 -4790626 - B4A SINE B4 -147 145 83 5 1495 207 204 0 0 chr9 119285562 119285616 -4790556 + CT-rich Low_complexity Low_complexity 2 55 0 6 1495 992 128 0 13 chr9 119285625 119285775 -4790397 - B1_Mus1 SINE Alu 0 148 1 6 1495 423 0 0 0 chr9 119285854 119285901 -4790271 + (TTA)n Simple_repeat Simple_repeat 2 48 0 6 1495 657 140 0 0 chr9 119285903 119286003 -4790169 - B1_Mus2 SINE Alu -6 141 42 6 1495 267 103 0 0 chr9 119286038 119286077 -4790095 + (GGA)n Simple_repeat Simple_repeat 2 40 0 6 1495 632 286 17 108 chr9 119286077 119286210 -4789962 - ID_B1 SINE B4 -12 212 81 6 1495 771 203 96 5 chr9 119286210 119286408 -4789764 - B3 SINE B2 0 216 1 6 1495 632 286 17 108 chr9 119286408 119286505 -4789667 - ID SINE ID -144 80 3 6 1495 1356 84 16 0 chr9 119286526 119286717 -4789455 - B2_Mm2 SINE B2 0 195 2 6 1495 293 215 31 0 chr9 119286725 119286790 -4789382 - ID_B1 SINE B4 -5 219 153 6 1495 297 0 0 0 chr9 119287509 119287542 -4788630 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1495 300 297 123 15 chr9 119287544 119287674 -4788498 - B1F SINE Alu -5 144 1 6 1495 273 370 0 0 chr9 119287734 119287826 -4788346 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 1495 525 303 24 48 chr9 119287831 119288039 -4788133 - B4 SINE B4 -3 289 87 6 1495 354 80 0 0 chr9 119291462 119291512 -4784660 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1495 216 239 44 15 chr9 119291622 119291690 -4784482 - B4A SINE B4 -222 70 1 6 1495 427 309 67 0 chr9 119292075 119292224 -4783948 - MIRb SINE MIR -90 178 20 6 1495 406 179 0 33 chr9 119292298 119292419 -4783753 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1495 723 200 13 33 chr9 119292865 119293015 -4783157 - B1_Mur4 SINE Alu -2 148 2 6 1495 288 288 19 99 chr9 119293015 119293047 -4783125 - RLTR25B LTR ERVK -637 391 373 6 1495 1134 51 92 49 chr9 119293284 119293468 -4782704 + B2_Mm2 SINE B2 2 193 -2 6 1495 1096 191 14 9 chr9 119293715 119293927 -4782245 - B3 SINE B2 -3 213 1 6 1495 210 71 0 0 chr9 119294189 119294217 -4781955 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 6 1495 334 281 0 11 chr9 119294267 119294357 -4781815 + ID_B1 SINE B4 126 214 -10 6 1495 317 256 147 43 chr9 119294378 119294541 -4781631 + B3A SINE B2 7 186 -9 6 1495 3403 50 28 0 chr9 119294549 119294973 -4781199 - RLTR10C LTR ERVK 0 436 1 6 1495 201 175 0 0 chr9 119294975 119295015 -4781157 + (TAA)n Simple_repeat Simple_repeat 3 42 0 6 1495 527 225 9 0 chr9 119295543 119295654 -4780518 - B4A SINE B4 -38 254 143 6 1495 317 185 5 112 chr9 119295665 119295778 -4780394 - B4A SINE B4 -94 198 97 6 1495 1056 146 0 0 chr9 119295781 119295959 -4780213 + (TTC)n Simple_repeat Simple_repeat 3 180 0 6 1495 204 209 0 0 chr9 119295959 119295978 -4780194 + polypyrimidine Low_complexity Low_complexity 25 43 0 6 1495 1017 123 0 16 chr9 119295978 119296160 -4780012 + (TCC)n Simple_repeat Simple_repeat 2 180 0 6 1495 204 209 0 0 chr9 119296160 119296183 -4779989 + polypyrimidine Low_complexity Low_complexity 2 24 0 6 1495 1105 78 0 0 chr9 119296183 119296325 -4779847 - B1_Mus1 SINE Alu -6 142 1 6 1495 362 283 0 21 chr9 119296325 119296419 -4779753 - B4 SINE B4 -197 95 4 6 1495 1271 219 106 18 chr9 119296515 119296845 -4779327 - MTD LTR MaLR -43 376 18 6 1495 184 30 61 0 chr9 119296846 119296879 -4779293 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1495 355 297 40 0 chr9 119296915 119297016 -4779156 + B4A SINE B4 39 143 -149 6 1495 354 325 34 0 chr9 119297487 119297604 -4778568 + B1F2 SINE Alu 23 143 -6 6 1495 211 237 50 66 chr9 119298343 119298524 -4777648 + (TTAG)n Simple_repeat Simple_repeat 1 178 0 6 1495 221 265 0 0 chr9 119298805 119298854 -4777318 - BC1_Mm scRNA scRNA -61 91 43 6 1495 252 0 0 0 chr9 119298882 119298910 -4777262 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 1495 307 275 0 12 chr9 119298919 119299000 -4777172 - B1F SINE Alu -2 147 68 6 1495 277 241 11 54 chr9 119299000 119299011 -4777161 - ID_B1 SINE B4 -2 222 135 6 1495 180 0 0 0 chr9 119299020 119299040 -4777132 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1495 1601 26 0 10 chr9 119299132 119299326 -4776846 - B2_Mm1a SINE B2 0 193 2 6 1495 288 0 0 0 chr9 119299798 119299830 -4776342 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1495 180 0 0 0 chr9 119299830 119299850 -4776322 + (CACTC)n Simple_repeat Simple_repeat 4 23 0 6 1495 216 328 0 0 chr9 119299867 119299928 -4776244 - ID4_ SINE ID -14 69 9 6 1495 225 217 22 0 chr9 119299949 119299995 -4776177 - B3A SINE B2 -122 76 30 6 1495 1073 124 16 31 chr9 119300004 119300196 -4775976 - Lx LINE L1 -21 6633 6445 6 1495 1041 78 0 7 chr9 119300241 119300383 -4775789 - B1_Mus2 SINE Alu -2 145 5 6 1495 394 281 19 19 chr9 119300385 119300541 -4775631 - MER33 DNA MER1_type -85 239 84 6 1495 1145 194 9 0 chr9 119300552 119300763 -4775409 - B3 SINE B2 0 216 4 6 1495 226 276 52 31 chr9 119301078 119301175 -4774997 + Tigger1 DNA MER2_type 1415 1513 -905 6 1495 524 241 166 0 chr9 119301606 119301751 -4774421 - ID_B1 SINE B4 -52 172 4 6 1495 221 319 14 0 chr9 119302478 119302547 -4773625 - ID4_ SINE ID -9 74 5 6 1495 762 242 44 15 chr9 119302694 119302899 -4773273 + B3 SINE B2 6 216 0 6 1495 659 262 0 0 chr9 119303434 119303575 -4772597 + RSINE1 SINE B4 3 143 -22 6 1495 1133 230 98 23 chr9 119303791 119304161 -4772011 - MTD LTR MaLR -14 405 18 6 1495 1374 74 0 36 chr9 119304260 119304456 -4771716 + B2_Mm2 SINE B2 1 189 -6 6 1495 790 62 0 30 chr9 119304562 119304695 -4771477 + Lx LINE L1 6520 6648 -6 6 1495 455 277 130 8 chr9 119304773 119304904 -4771268 + RSINE1 SINE B4 19 165 0 6 1495 305 332 118 29 chr9 119304905 119305150 -4771022 + L1MC4 LINE L1 2074 2340 -3875 6 1495 225 220 181 32 chr9 119305497 119305591 -4770581 + RLTR25B LTR ERVK 378 485 -543 6 1495 574 183 99 8 chr9 119305523 119305644 -4770528 + B1_Mur1 SINE Alu 18 149 0 6 1495 578 302 18 51 chr9 119305673 119305861 -4770311 + B3 SINE B2 2 194 -1 6 1495 1188 85 85 0 chr9 119305973 119306132 -4770040 + B2_Mm1a SINE B2 1 160 -33 6 1495 279 0 0 0 chr9 119306132 119306163 -4770009 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 1495 1188 85 85 0 chr9 119306163 119306180 -4769992 + B2_Mm1a SINE B2 161 190 -3 6 1495 201 74 0 0 chr9 119306180 119306207 -4769965 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 6 1495 657 192 0 8 chr9 119306257 119306378 -4769794 + B1_Mur1 SINE Alu 24 143 -6 6 1495 284 80 20 0 chr9 119306513 119306551 -4769621 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 6 1495 1079 88 0 0 chr9 119306551 119306698 -4769474 - B1_Mus2 SINE Alu 0 147 1 6 1495 284 80 20 0 chr9 119306698 119306709 -4769463 + (TTTTG)n Simple_repeat Simple_repeat 3 14 0 6 1495 730 196 48 22 chr9 119306750 119306941 -4769231 - B3 SINE B2 -1 215 39 6 1495 423 333 49 62 chr9 119307344 119307587 -4768585 + MLT1I LTR MaLR 163 402 -9 6 1495 346 340 47 81 chr9 119307594 119307805 -4768367 + MLT1I-int LTR MaLR 505 708 -679 6 1495 880 324 105 87 chr9 119308146 119308455 -4767717 - Tigger7 DNA MER2_type -1929 562 221 6 1495 737 212 165 0 chr9 119308455 119308625 -4767547 + B3A SINE B2 1 198 0 6 1495 880 324 105 87 chr9 119308625 119308866 -4767306 - Tigger7 DNA MER2_type -2271 220 2 6 1495 1279 77 60 0 chr9 119308911 119309094 -4767078 - B2_Mm2 SINE B2 0 195 2 6 1495 180 0 0 0 chr9 119309112 119309132 -4767040 + (TTA)n Simple_repeat Simple_repeat 2 21 0 6 1495 1159 42 7 0 chr9 119309132 119309275 -4766897 - B1_Mm SINE Alu -2 145 2 6 1495 186 71 0 0 chr9 119309280 119309308 -4766864 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 1495 1166 35 0 0 chr9 119309316 119309457 -4766715 - B1_Mm SINE Alu -5 142 2 6 1495 600 266 19 94 chr9 119309458 119309670 -4766502 - B3A SINE B2 -2 196 1 6 1495 421 270 36 0 chr9 119309730 119309841 -4766331 + RSINE1 SINE B4 11 125 -40 6 1495 462 101 0 0 chr9 119309893 119309962 -4766210 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1495 23 0 0 0 chr9 119310441 119310464 -4765708 + GC_rich Low_complexity Low_complexity 1 23 0 6 1495 209 238 29 71 chr9 119311297 119311437 -4764735 + C-rich Low_complexity Low_complexity 6 139 0 6 1495 33 85 0 0 chr9 119311578 119311660 -4764512 + GC_rich Low_complexity Low_complexity 1 82 0 6 1495 22 35 0 0 chr9 119311776 119311805 -4764367 + GC_rich Low_complexity Low_complexity 1 29 0 6 1495 567 195 147 66 chr9 119313770 119313968 -4762204 + B3 SINE B2 1 214 -2 6 1495 362 326 7 52 chr9 119314035 119314171 -4762001 - MLT1A LTR MaLR -221 153 24 6 1495 653 234 0 27 chr9 119314271 119314420 -4761752 - B1_Mur4 SINE Alu -4 146 2 6 1495 355 281 24 16 chr9 119314442 119314565 -4761607 - MER33 DNA MER1_type -198 126 3 6 1495 216 0 0 0 chr9 119315345 119315369 -4760803 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1495 505 278 0 20 chr9 119315796 119316101 -4760071 + (TG)n Simple_repeat Simple_repeat 1 298 0 6 1495 501 360 89 11 chr9 119316176 119316274 -4759898 - B4A SINE B4 0 292 186 6 1495 416 236 68 54 chr9 119316274 119316422 -4759750 - RSINE1 SINE B4 -12 153 4 6 1495 501 360 89 11 chr9 119316422 119316593 -4759579 - B4A SINE B4 -107 185 3 6 1495 192 40 0 0 chr9 119318740 119318765 -4757407 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 6 1495 281 143 36 0 chr9 119318759 119318815 -4757357 + CT-rich Low_complexity Low_complexity 4 61 0 6 1495 192 125 0 0 chr9 119318810 119318842 -4757330 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 6 1495 258 230 95 48 chr9 119319423 119319528 -4756644 + PB1D10 SINE Alu 5 114 -3 6 1495 231 36 0 0 chr9 119319594 119319622 -4756550 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1495 734 206 13 25 chr9 119319654 119319813 -4756359 - B3A SINE B2 -30 168 12 6 1495 719 300 52 4 chr9 119319819 119320050 -4756122 - ID_B1 SINE B4 -47 245 6 7 1495 480 261 18 0 chr9 119320183 119320294 -4755878 - RSINE1 SINE B4 -30 135 23 7 1495 1959 153 52 117 chr9 119320361 119320857 -4755315 - RMER4A LTR ERVK 0 466 3 7 1495 789 89 32 8 chr9 119320859 119320984 -4755188 - MurERV4-int LTR ERVK 0 5260 5133 7 1495 7673 172 71 22 chr9 119320975 119322647 -4753525 - MurERV4-int LTR ERVK -3137 2123 297 7 1495 891 105 28 7 chr9 119322647 119322791 -4753381 - B1_Mus1 SINE Alu -1 147 1 7 1495 372 203 30 119 chr9 119322678 119322812 -4753360 - MT2B LTR ERVL -337 264 143 7 1495 1078 155 9 55 chr9 119322812 119323031 -4753141 - MurERV4-int LTR ERVK -5015 245 37 7 1495 1061 61 0 0 chr9 119323071 119323203 -4752969 - B1_Mus2 SINE Alu -15 132 1 7 1495 287 126 340 38 chr9 119323766 119323872 -4752300 - B2_Mm2 SINE B2 -7 188 51 7 1495 987 112 24 24 chr9 119323874 119324039 -4752133 - B2_Mm1t SINE B2 -28 165 1 7 1495 293 192 0 0 chr9 119324039 119324091 -4752081 - MurERV4-int LTR ERVK -5208 52 1 7 1495 1136 142 396 3 chr9 119324091 119324423 -4751749 - RMER4A LTR ERVK 0 466 4 7 1495 789 226 76 16 chr9 119324530 119324714 -4751458 + B3 SINE B2 15 209 -7 7 1495 1115 75 68 17 chr9 119325034 119325211 -4750961 - B2_Mm2 SINE B2 0 195 10 7 1495 1404 73 16 0 chr9 119325276 119325467 -4750705 - B2_Mm2 SINE B2 0 195 2 7 1495 204 67 0 0 chr9 119325473 119325503 -4750669 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1495 681 250 0 14 chr9 119325547 119325693 -4750479 - B1F1 SINE Alu -2 147 4 7 1495 392 135 225 0 chr9 119326663 119326752 -4749420 - PB1D9 SINE Alu -6 114 6 7 1495 469 204 52 17 chr9 119326913 119327028 -4749144 - PB1D9 SINE Alu -1 119 1 7 1495 664 171 0 126 chr9 119328229 119328396 -4747776 - B1_Mur2 SINE Alu -1 148 3 7 1495 204 97 0 0 chr9 119328440 119328471 -4747701 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1495 915 178 98 16 chr9 119328576 119328770 -4747402 - B3 SINE B2 -4 212 3 7 1495 192 111 0 0 chr9 119328931 119328967 -4747205 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 1495 513 175 17 17 chr9 119329885 119330001 -4746171 + B3A SINE B2 47 162 -36 7 1495 260 256 22 11 chr9 119330381 119330472 -4745700 + L1MEd LINE L1 665 756 -5363 7 1495 361 289 105 20 chr9 119330514 119330666 -4745506 + B3A SINE B2 1 165 -33 7 1495 666 171 225 39 chr9 119330671 119330853 -4745319 - RMER4A LTR ERVK -6 460 245 7 1495 512 144 61 10 chr9 119330855 119330953 -4745219 + B1_Mur3 SINE Alu 46 148 -1 7 1495 183 80 0 0 chr9 119330957 119330982 -4745190 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 7 1495 258 282 14 14 chr9 119331063 119331135 -4745037 + B3 SINE B2 3 74 -142 7 1495 360 0 0 0 chr9 119331142 119331182 -4744990 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1495 461 173 37 0 chr9 119331196 119331277 -4744895 + B1_Mur2 SINE Alu 37 120 -29 7 1495 313 247 30 61 chr9 119331280 119331379 -4744793 + L1MEd LINE L1 941 1036 -5083 7 1495 314 312 492 8 chr9 119331414 119331657 -4744515 + MTEa LTR MaLR 2 379 0 7 1495 557 287 26 26 chr9 119331803 119331937 -4744235 + ORR1E LTR MaLR 1 135 -224 7 1495 3830 103 11 5 chr9 119331937 119332501 -4743671 - RMER2 LTR ERV1 0 567 1 7 1495 557 287 26 26 chr9 119332501 119332559 -4743613 + ORR1E LTR MaLR 136 193 -166 7 1495 707 63 193 67 chr9 119333325 119333444 -4742728 - B1_Mus1 SINE Alu -13 135 2 7 1495 399 238 39 19 chr9 119334071 119334174 -4741998 - B3A SINE B2 -79 119 15 7 1495 243 0 0 0 chr9 119334263 119334290 -4741882 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1495 190 168 162 24 chr9 119334676 119334759 -4741413 - MIRc SINE MIR -82 180 73 7 1495 836 212 20 7 chr9 119337933 119338080 -4738092 - B1_Mur1 SINE Alu 0 149 1 7 1495 24 32 0 0 chr9 119338112 119338143 -4738029 + AT_rich Low_complexity Low_complexity 1 31 0 7 1495 1088 71 43 0 chr9 119338143 119338284 -4737888 - B1_Mus1 SINE Alu 0 148 2 7 1495 1050 221 10 19 chr9 119338299 119338507 -4737665 - B3 SINE B2 -10 206 1 7 1495 459 239 45 9 chr9 119338518 119338628 -4737544 - B4A SINE B4 -70 222 109 7 1495 213 163 0 0 chr9 119339827 119339876 -4736296 + G-rich Low_complexity Low_complexity 1 49 0 7 1495 30 45 0 0 chr9 119340658 119340702 -4735470 + AT_rich Low_complexity Low_complexity 1 44 0 7 1495 290 281 20 20 chr9 119340724 119340822 -4735350 - RSINE1 SINE B4 -60 105 8 7 1495 245 361 155 4 chr9 119340992 119341237 -4734935 - B4A SINE B4 -10 282 1 7 1495 240 241 77 44 chr9 119341251 119341342 -4734830 - PB1D7 SINE Alu -17 103 10 7 1495 204 125 0 0 chr9 119342619 119342651 -4733521 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1495 264 91 0 0 chr9 119342722 119342766 -4733406 + (TTA)n Simple_repeat Simple_repeat 2 45 0 7 1495 22 0 0 0 chr9 119343817 119343839 -4732333 + AT_rich Low_complexity Low_complexity 1 22 0 7 1495 180 0 0 0 chr9 119343853 119343873 -4732299 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1495 210 238 0 0 chr9 119345313 119345355 -4730817 + CT-rich Low_complexity Low_complexity 4 45 0 7 1495 41 0 0 0 chr9 119349357 119349398 -4726774 + AT_rich Low_complexity Low_complexity 1 41 0 7 1495 321 26 0 0 chr9 119350880 119350918 -4725254 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1495 26 0 0 0 chr9 119351229 119351255 -4724917 + AT_rich Low_complexity Low_complexity 1 26 0 7 1495 915 191 27 89 chr9 119351264 119351488 -4724684 - B3 SINE B2 -2 214 5 7 1495 778 71 0 9 chr9 119351488 119351602 -4724570 - B1_Mm SINE Alu -32 115 3 7 1495 319 260 133 9 chr9 119351602 119351704 -4724468 - MTE2b LTR MaLR -84 295 181 7 1495 284 118 20 0 chr9 119351761 119351812 -4724360 - B1_Mus2 SINE Alu -1 146 95 7 1495 499 226 0 0 chr9 119352135 119352228 -4723944 - B1_Mm SINE Alu -49 98 6 7 1495 927 247 57 129 chr9 119352250 119352706 -4723466 - RLTR23 LTR ERV1 0 430 8 7 1495 276 219 0 52 chr9 119352809 119352821 -4723351 + ID_B1 SINE B4 151 223 -1 7 1495 462 62 0 0 chr9 119352821 119352886 -4723286 + B1_Mur4 SINE Alu 85 149 -1 7 1495 516 217 0 0 chr9 119352943 119353035 -4723137 - B3 SINE B2 -123 93 2 7 1495 562 259 30 0 chr9 119353207 119353342 -4722830 - B1F SINE Alu -6 143 5 7 1495 563 229 41 0 chr9 119353411 119353533 -4722639 - RSINE1 SINE B4 -30 135 9 7 1495 185 233 133 0 chr9 119354383 119354443 -4721729 + L2b LINE L2 3287 3354 -21 7 1495 759 169 161 21 chr9 119354444 119354637 -4721535 - MTE2b LTR MaLR 0 379 160 7 1495 751 245 36 36 chr9 119354638 119354858 -4721314 - MTE2a LTR MaLR -141 238 19 7 1495 246 340 41 10 chr9 119355641 119355739 -4720433 + B1F SINE Alu 9 109 -40 7 1495 813 247 22 35 chr9 119356341 119356572 -4719600 - ORR1C2 LTR MaLR -155 229 2 7 1495 238 280 101 31 chr9 119356833 119356962 -4719210 - Lx8 LINE L1 -11 7462 7325 7 1495 234 229 42 0 chr9 119357850 119357898 -4718274 - ID4_ SINE ID -33 50 1 7 1495 527 272 0 0 chr9 119358293 119358407 -4717765 - ID_B1 SINE B4 -23 201 88 7 1495 249 108 0 0 chr9 119358410 119358447 -4717725 + (CATG)n Simple_repeat Simple_repeat 4 40 0 7 1495 444 37 0 0 chr9 119358501 119358555 -4717617 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1495 410 311 37 22 chr9 119358555 119358690 -4717482 - RSINE1 SINE B4 -25 140 4 7 1495 192 77 0 0 chr9 119358732 119358758 -4717414 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 7 1495 217 271 73 0 chr9 119359224 119359312 -4716860 - B1F1 SINE Alu -23 94 3 7 1495 198 0 0 0 chr9 119359642 119359664 -4716508 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1495 264 361 80 17 chr9 119359672 119359850 -4716322 + B3A SINE B2 27 216 0 7 1495 1284 34 0 0 chr9 119359867 119360014 -4716158 + B1_Mus2 SINE Alu 1 147 0 7 1495 241 288 138 0 chr9 119360052 119360132 -4716040 + B3A SINE B2 1 91 -107 7 1495 1166 182 96 38 chr9 119360673 119361059 -4715113 - RLTR13D6 LTR ERVK -26 876 449 7 1495 367 296 0 20 chr9 119361041 119361141 -4715031 - RLTR13D6 LTR ERVK -466 512 415 7 1495 423 255 0 29 chr9 119361117 119361222 -4714950 - B1_Mur2 SINE Alu -44 105 4 7 1495 728 122 8 0 chr9 119361648 119361771 -4714401 + (TTCC)n Simple_repeat Simple_repeat 2 125 0 7 1495 1286 68 25 35 chr9 119361777 119361793 -4714379 - B2_Mm2 SINE B2 0 195 181 7 1495 919 47 141 44 chr9 119361793 119361928 -4714244 - B1_Mus1 SINE Alu 0 148 1 7 1495 1641 36 5 0 chr9 119361936 119362128 -4714044 - B2_Mm1t SINE B2 0 193 1 7 1495 1286 68 25 35 chr9 119362128 119362299 -4713873 - B2_Mm2 SINE B2 -23 172 2 7 1495 243 0 0 0 chr9 119362643 119362670 -4713502 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 7 1495 23 68 0 0 chr9 119363092 119363136 -4713036 + AT_rich Low_complexity Low_complexity 1 44 0 7 1495 183 266 125 0 chr9 119363486 119363550 -4712622 - L3 LINE CR1 -306 4183 4112 7 1495 281 314 203 5 chr9 119363837 119364029 -4712143 + L1MC4 LINE L1 7168 7397 -645 7 1495 336 273 227 12 chr9 119364284 119364540 -4711632 + L1MC4 LINE L1 7732 8042 0 7 1495 612 40 0 0 chr9 119364963 119365038 -4711134 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 7 1495 423 0 0 0 chr9 119365038 119365085 -4711087 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1495 534 179 0 10 chr9 119365263 119365359 -4710813 - B1_Mur4 SINE Alu -9 141 47 7 1495 254 330 34 0 chr9 119365515 119365603 -4710569 - PB1 SINE Alu -9 118 28 7 1495 1226 190 33 11 chr9 119365873 119366145 -4710027 + Lx7 LINE L1 7419 7696 0 7 1495 218 349 92 0 chr9 119366763 119366872 -4709300 - MIRb SINE MIR -122 146 28 7 1495 400 221 77 0 chr9 119368361 119368465 -4707707 - PB1D10 SINE Alu -2 115 4 7 1495 290 159 14 87 chr9 119368472 119368541 -4707631 - PB1D9 SINE Alu -8 112 49 7 1495 809 34 0 33 chr9 119368549 119368670 -4707502 + (TCCCC)n Simple_repeat Simple_repeat 1 117 0 7 1495 246 32 0 0 chr9 119368670 119368701 -4707471 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1495 1109 95 0 13 chr9 119369021 119369170 -4707002 - B1_Mus1 SINE Alu -1 147 1 8 1495 460 293 40 40 chr9 119369933 119370107 -4706065 - ID_B1 SINE B4 -2 222 49 8 1495 726 169 22 7 chr9 119371145 119371282 -4704890 - B1_Mus2 SINE Alu 0 147 9 8 1495 180 0 0 0 chr9 119373372 119373392 -4702780 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 8 1495 853 228 0 43 chr9 119373406 119373594 -4702578 - B3 SINE B2 -19 197 18 8 1495 521 285 92 56 chr9 119374414 119374663 -4701509 + ORR1E LTR MaLR 96 353 -6 8 1495 225 0 0 0 chr9 119375216 119375241 -4700931 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1495 1058 105 28 0 chr9 119375241 119375384 -4700788 - B1_Mus2 SINE Alu 0 147 1 8 1495 294 309 106 0 chr9 119375501 119375595 -4700577 + PB1D10 SINE Alu 13 116 -1 8 1495 854 189 33 0 chr9 119375596 119375776 -4700396 + URR1B DNA MER1_type 40 225 0 8 1495 190 316 63 0 chr9 119375810 119375889 -4700283 - MER5A DNA MER1_type -50 139 56 8 1495 1028 208 56 0 chr9 119375890 119376087 -4700085 - B3 SINE B2 -7 209 2 8 1495 288 130 0 0 chr9 119376089 119376135 -4700037 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1495 222 305 12 35 chr9 119376162 119376247 -4699925 - RSINE1 SINE B4 0 165 83 8 1495 219 324 152 0 chr9 119376920 119377025 -4699147 - L3 LINE CR1 -851 3638 3518 8 1495 253 186 0 92 chr9 119377105 119377170 -4699002 + PB1D9 SINE Alu 60 118 -2 8 1495 543 271 107 0 chr9 119379468 119379608 -4696564 + RSINE1 SINE B4 4 158 -7 8 1495 210 37 0 0 chr9 119379613 119379640 -4696532 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1495 192 125 0 0 chr9 119379952 119379984 -4696188 + (GA)n Simple_repeat Simple_repeat 2 33 0 8 1495 378 331 0 28 chr9 119380043 119380186 -4695986 + MIR SINE MIR 1 139 -123 8 1495 535 300 34 29 chr9 119380684 119380890 -4695282 - L1MC4 LINE L1 -393 7649 7443 8 1495 935 204 55 21 chr9 119381082 119381317 -4694855 - L1MC4 LINE L1 -1069 6973 6731 8 1495 231 222 0 43 chr9 119381439 119381508 -4694664 + CT-rich Low_complexity Low_complexity 27 92 0 8 1495 608 48 0 24 chr9 119381508 119381593 -4694579 + (TCCCC)n Simple_repeat Simple_repeat 1 83 0 8 1495 231 222 0 43 chr9 119381593 119381617 -4694555 + polypyrimidine Low_complexity Low_complexity 3 26 0 8 1495 615 237 37 7 chr9 119382243 119382379 -4693793 - RSINE1 SINE B4 -23 142 3 8 1495 262 192 23 114 chr9 119382382 119382470 -4693702 - ID_B1 SINE B4 0 224 145 8 1495 339 226 23 52 chr9 119382393 119382497 -4693675 - B1F SINE Alu -8 141 43 8 1495 688 325 31 86 chr9 119383251 119383611 -4692561 - MTEa LTR MaLR 0 379 40 8 1495 286 317 20 10 chr9 119383690 119383792 -4692380 + L2b LINE L2 3245 3347 -28 8 1495 316 213 0 87 chr9 119385334 119385437 -4690735 + RLTR25B LTR ERVK 428 521 -507 8 1495 787 40 0 0 chr9 119385358 119385459 -4690713 + B1_Mm SINE Alu 47 147 0 8 1495 180 111 0 0 chr9 119385599 119385626 -4690546 + (CCGAA)n Simple_repeat Simple_repeat 1 27 0 8 1495 254 125 0 40 chr9 119385639 119385689 -4690483 + B1_Mus1 SINE Alu 13 60 -88 8 1495 433 160 33 30 chr9 119385694 119385999 -4690173 + GA-rich Low_complexity Low_complexity 1 306 0 8 1495 301 208 25 25 chr9 119386033 119386112 -4690060 + PB1D9 SINE Alu 40 118 -2 8 1495 250 190 0 65 chr9 119386323 119386385 -4689787 + L1ME1 LINE L1 6120 6177 -2 8 1495 1264 7 0 33 chr9 119386394 119386545 -4689627 + B1_Mus1 SINE Alu 3 148 0 8 1495 237 22 65 22 chr9 119386547 119386593 -4689579 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 8 1495 613 234 6 35 chr9 119386768 119386941 -4689231 - L2 LINE L2 -717 2702 2535 8 1495 181 287 11 84 chr9 119388160 119388255 -4687917 - L2b LINE L2 -8 3367 3280 8 1495 189 0 0 0 chr9 119388376 119388397 -4687775 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 8 1495 726 207 149 29 chr9 119388981 119389155 -4687017 - B3 SINE B2 -7 209 15 8 1495 5714 57 0 0 chr9 119389447 119390132 -4686040 - L1_Mus1 LINE L1 0 6567 5883 8 1495 956 151 6 0 chr9 119391498 119391677 -4684495 + (CCAA)n Simple_repeat Simple_repeat 1 180 0 8 1495 229 362 15 23 chr9 119391801 119391934 -4684238 + L1MB2 LINE L1 6037 6168 -3 8 1495 243 256 134 0 chr9 119396257 119396339 -4679833 + MER5A1 DNA MER1_type 1 93 -73 8 1495 734 296 70 21 chr9 119397130 119397572 -4678600 + L1_Mur3 LINE L1 5119 5591 -593 8 1495 325 157 0 0 chr9 119397908 119397959 -4678213 + L1MB7 LINE L1 6133 6183 -1 8 1495 934 137 0 28 chr9 119397969 119398112 -4678060 + B1_Mus1 SINE Alu 1 139 -9 8 1495 433 216 14 0 chr9 119398603 119398742 -4677430 + (TG)n Simple_repeat Simple_repeat 2 142 0 8 1495 647 272 37 73 chr9 119399584 119399802 -4676370 - B3A SINE B2 -5 211 2 8 1495 522 158 21 12 chr9 119400012 119400133 -4676039 - PB1D9 SINE Alu -1 119 1 8 1495 256 244 206 56 chr9 119400021 119400147 -4676025 - ID_B1 SINE B4 0 224 80 8 1495 231 217 0 0 chr9 119401413 119401473 -4674699 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1495 237 196 0 0 chr9 119401997 119402048 -4674124 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1495 368 318 0 9 chr9 119402809 119402920 -4673252 - MER63D DNA AcHobo -947 114 5 8 1495 737 249 5 75 chr9 119403171 119403384 -4672788 - B3A SINE B2 0 198 1 8 1495 1016 80 14 7 chr9 119403419 119403558 -4672614 - B1_Mur4 SINE Alu -10 140 1 8 1495 384 77 0 0 chr9 119403597 119403649 -4672523 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1495 262 250 0 0 chr9 119403649 119403701 -4672471 - B4A SINE B4 -23 269 218 8 1495 620 223 14 28 chr9 119403711 119403854 -4672318 - RSINE1 SINE B4 0 165 25 8 1495 883 245 5 0 chr9 119403871 119404063 -4672109 - B4A SINE B4 -87 205 13 8 1495 292 214 86 0 chr9 119404186 119404256 -4671916 - ID2 SINE ID -6 77 2 8 1495 279 114 0 0 chr9 119405914 119405958 -4670214 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1495 308 249 101 50 chr9 119406088 119406373 -4669799 + Lx9 LINE L1 5777 6090 -1606 8 1495 21 0 0 0 chr9 119406437 119406458 -4669714 + AT_rich Low_complexity Low_complexity 1 21 0 8 1495 365 308 37 0 chr9 119406483 119406590 -4669582 + RSINE1 SINE B4 34 144 -21 8 1496 369 0 0 0 chr9 119406610 119406651 -4669521 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1496 288 349 171 0 chr9 119408110 119408425 -4667747 + L2 LINE L2 2502 2870 -549 8 1496 486 162 0 0 chr9 119408430 119408504 -4667668 - ID4_ SINE ID -7 76 3 8 1496 354 223 53 11 chr9 119408514 119408609 -4667563 - PB1D10 SINE Alu -1 116 18 8 1496 189 0 0 0 chr9 119408684 119408705 -4667467 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 8 1496 461 248 9 27 chr9 119408955 119409067 -4667105 - PB1D10 SINE Alu -7 110 1 8 1496 704 299 0 0 chr9 119409119 119409273 -4666899 - RSINE1 SINE B4 -10 155 2 8 1496 247 235 136 0 chr9 119411160 119411241 -4664931 + ID_B1 SINE B4 84 175 -49 8 1496 236 245 0 0 chr9 119411291 119411340 -4664832 + PB1D10 SINE Alu 68 116 -1 8 1496 915 171 0 0 chr9 119411779 119411919 -4664253 - B1_Mur1 SINE Alu -5 144 5 8 1496 228 35 0 0 chr9 119412117 119412146 -4664026 + (C)n Simple_repeat Simple_repeat 1 29 0 8 1496 378 0 0 0 chr9 119412607 119412649 -4663523 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1496 338 0 24 0 chr9 119412649 119412690 -4663482 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1496 516 257 98 33 chr9 119412858 119413011 -4663161 - B3A SINE B2 -1 197 35 8 1496 275 219 60 12 chr9 119413020 119413103 -4663069 + PB1D10 SINE Alu 24 110 -7 8 1496 1096 190 50 0 chr9 119413681 119413881 -4662291 + B3 SINE B2 1 210 -6 8 1496 208 0 0 59 chr9 119414174 119414208 -4661964 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 8 1496 376 284 19 124 chr9 119414493 119414654 -4661518 - RSINE1 SINE B4 -19 146 3 8 1496 1167 111 31 31 chr9 119414937 119414971 -4661201 - B2_Mm2 SINE B2 0 195 159 8 1496 213 39 0 0 chr9 119414971 119414997 -4661175 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 8 1496 1167 111 31 31 chr9 119414997 119415157 -4661015 - B2_Mm2 SINE B2 -37 158 1 8 1496 464 307 137 54 chr9 119415229 119415470 -4660702 - B4A SINE B4 0 292 32 8 1496 672 88 0 34 chr9 119415535 119415652 -4660520 + (TCCC)n Simple_repeat Simple_repeat 1 113 0 8 1496 553 168 11 0 chr9 119415656 119415751 -4660421 - B1_Mus1 SINE Alu -51 97 2 8 1496 228 246 76 15 chr9 119415751 119415791 -4660381 - ORR1B1-int LTR MaLR -861 648 601 8 1496 396 179 16 124 chr9 119415751 119415777 -4660395 - MT2B LTR ERVL -350 251 144 8 1496 655 247 120 94 chr9 119416299 119416491 -4659681 - B3 SINE B2 0 216 2 8 1496 204 163 0 0 chr9 119416497 119416540 -4659632 + CT-rich Low_complexity Low_complexity 1 43 0 8 1496 676 269 35 6 chr9 119416541 119416713 -4659459 - B3A SINE B2 -19 179 3 8 1496 23 33 0 0 chr9 119416944 119416974 -4659198 + AT_rich Low_complexity Low_complexity 1 30 0 8 1496 217 234 35 35 chr9 119417039 119417154 -4659018 + (TG)n Simple_repeat Simple_repeat 1 115 0 8 1496 513 0 0 0 chr9 119417300 119417357 -4658815 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 8 1496 237 364 52 22 chr9 119417430 119417565 -4658607 + MIR SINE MIR 121 259 -3 8 1496 23 33 0 0 chr9 119417744 119417774 -4658398 + AT_rich Low_complexity Low_complexity 1 30 0 8 1496 1196 194 14 0 chr9 119417775 119417986 -4658186 - B3 SINE B2 -2 214 1 9 1496 655 254 65 27 chr9 119418007 119418193 -4657979 - B3A SINE B2 -5 193 1 9 1496 463 317 38 7 chr9 119418401 119418578 -4657594 + B3 SINE B2 25 203 -13 9 1496 227 31 0 30 chr9 119418599 119418632 -4657540 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1496 566 284 138 39 chr9 119418633 119418915 -4657257 + MTEb LTR MaLR 12 321 -58 9 1496 312 190 97 123 chr9 119419253 119419367 -4656805 + MTEa LTR MaLR 260 370 -9 9 1496 341 282 101 85 chr9 119419576 119419754 -4656418 - L1MC4 LINE L1 -3879 2355 2156 9 1496 852 105 21 0 chr9 119419754 119419897 -4656275 + (TTTC)n Simple_repeat Simple_repeat 1 146 0 9 1496 312 282 101 85 chr9 119419897 119419966 -4656206 - L1MC4 LINE L1 -4069 2165 2104 9 1496 569 179 8 39 chr9 119422808 119422936 -4653236 + URR1B DNA MER1_type 83 206 -19 9 1496 600 162 15 54 chr9 119422914 119423044 -4653128 + URR1B DNA MER1_type 101 225 0 9 1496 558 323 46 17 chr9 119423199 119423438 -4652734 + LTR16A1 LTR ERVL 211 456 0 9 1496 608 213 142 0 chr9 119423879 119424034 -4652138 - ID_B1 SINE B4 -45 179 3 9 1496 777 120 0 0 chr9 119425514 119425647 -4650525 + (CA)n Simple_repeat Simple_repeat 1 133 0 9 1496 977 127 6 0 chr9 119429645 119429811 -4646361 + (TGGA)n Simple_repeat Simple_repeat 3 169 0 9 1496 267 79 0 0 chr9 119431536 119431574 -4644598 + (CCCCG)n Simple_repeat Simple_repeat 1 38 0 9 1496 363 287 16 16 chr9 119432084 119432208 -4643964 - MIRb SINE MIR -75 193 70 9 1496 257 329 198 18 chr9 119432226 119432393 -4643779 - RMER30 DNA MER1_type -1 201 5 9 1496 934 205 79 10 chr9 119433703 119433905 -4642267 + B3 SINE B2 1 216 0 9 1496 1332 108 32 0 chr9 119433919 119434105 -4642067 + B2_Mm2 SINE B2 2 193 -2 9 1496 225 362 30 48 chr9 119434783 119434951 -4641221 - YREP_Mm Unknown Unknown -1466 346 182 9 1496 671 239 14 0 chr9 119434813 119434955 -4641217 + ID_B1 SINE B4 80 223 -1 9 1496 183 80 0 0 chr9 119435006 119435031 -4641141 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 1496 947 131 0 0 chr9 119435034 119435171 -4641001 - B1_Mus2 SINE Alu -6 141 5 9 1496 303 71 0 0 chr9 119435346 119435388 -4640784 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 9 1496 470 176 88 8 chr9 119435410 119435529 -4640643 - B3A SINE B2 -63 132 1 9 1496 189 273 12 14 chr9 119436407 119436492 -4639680 + MIR SINE MIR 107 197 -79 9 1496 335 332 22 76 chr9 119436484 119436709 -4639463 - MIRb SINE MIR -10 258 46 9 1496 218 374 23 6 chr9 119436863 119437038 -4639134 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 9 1496 1212 119 3 0 chr9 119437083 119437437 -4638735 + (TCCA)n Simple_repeat Simple_repeat 1 355 0 9 1496 233 208 14 0 chr9 119437469 119437541 -4638631 + (TCCA)n Simple_repeat Simple_repeat 2 74 0 9 1496 388 339 15 0 chr9 119439340 119439470 -4636702 - RSINE1 SINE B4 -31 134 3 9 1496 270 0 0 0 chr9 119439473 119439503 -4636669 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 9 1496 953 217 9 55 chr9 119439506 119439725 -4636447 - ID_B1 SINE B4 -15 209 1 9 1496 986 199 61 10 chr9 119440084 119440282 -4635890 - B3 SINE B2 -8 208 1 9 1496 1207 50 0 0 chr9 119440343 119440483 -4635689 - B1_Mus1 SINE Alu -8 140 1 9 1496 208 355 77 14 chr9 119441522 119441665 -4634507 - MIR SINE MIR -33 229 78 9 1496 318 312 57 19 chr9 119442026 119442183 -4633989 - MIRb SINE MIR -103 165 3 9 1496 188 138 0 0 chr9 119442669 119442698 -4633474 + MIRm SINE MIR 235 263 -13 9 1496 297 0 0 0 chr9 119444136 119444169 -4632003 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1496 1099 260 46 11 chr9 119444232 119444512 -4631660 - B4 SINE B4 -2 290 1 9 1496 215 374 117 0 chr9 119447350 119447513 -4628659 + MER5A DNA MER1_type 7 188 -1 9 1496 252 0 0 0 chr9 119447973 119448001 -4628171 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1496 824 289 10 50 chr9 119448006 119448214 -4627958 - B4A SINE B4 -2 290 94 9 1496 895 73 33 0 chr9 119448214 119448364 -4627808 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 9 1496 824 289 10 50 chr9 119448364 119448457 -4627715 - B4A SINE B4 -199 93 1 9 1496 877 260 8 39 chr9 119451077 119451337 -4624835 - B4A SINE B4 -39 253 2 9 1496 387 241 61 18 chr9 119455265 119455379 -4620793 + MIR3 SINE MIR 36 154 -54 9 1496 3401 35 2 5 chr9 119455707 119456104 -4620068 + MTA_Mm LTR MaLR 1 396 0 9 1496 693 327 183 12 chr9 119456516 119457173 -4618999 + L2b LINE L2 1434 2202 -1217 9 1496 1057 255 14 0 chr9 119457173 119457381 -4618791 - B3 SINE B2 -4 212 2 9 1496 738 261 0 33 chr9 119457403 119457585 -4618587 - B3A SINE B2 -7 191 16 9 1496 522 0 0 0 chr9 119457923 119457981 -4618191 + (TC)n Simple_repeat Simple_repeat 1 58 0 9 1496 188 282 0 53 chr9 119458138 119458213 -4617959 + L2b LINE L2 2912 2982 -393 9 1496 201 285 74 12 chr9 119458200 119458289 -4617883 + MIRm SINE MIR 61 154 -54 9 1496 357 290 232 0 chr9 119458839 119458994 -4617178 - RMER30 DNA MER1_type -3 199 9 9 1496 340 267 44 79 chr9 119459257 119459371 -4616801 - B1F SINE Alu -6 143 34 9 1496 1159 233 149 20 chr9 119462752 119463107 -4613065 + MTD LTR MaLR 19 419 0 9 1496 299 330 194 9 chr9 119463336 119463547 -4612625 - MIR SINE MIR -4 258 9 9 1496 419 279 0 43 chr9 119463702 119463852 -4612320 + MLT1D LTR MaLR 280 404 -63 9 1496 1429 223 25 7 chr9 119464235 119464520 -4611652 - B4 SINE B4 0 292 3 9 1496 432 0 0 0 chr9 119465539 119465587 -4610585 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1496 509 178 65 0 chr9 119466242 119466349 -4609823 + PB1D9 SINE Alu 2 115 -5 9 1496 252 290 39 29 chr9 119466406 119466509 -4609663 + L1MB7 LINE L1 6040 6143 -41 9 1496 285 314 24 51 chr9 119466509 119466712 -4609460 + B2_Mm2 SINE B2 2 196 -2 9 1496 552 179 9 9 chr9 119466785 119467006 -4609166 + (CA)n Simple_repeat Simple_repeat 1 221 0 9 1496 568 265 76 0 chr9 119468130 119468262 -4607910 + RSINE1 SINE B4 11 152 -13 9 1496 228 149 0 0 chr9 119468277 119468324 -4607848 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 9 1496 448 226 113 0 chr9 119468543 119468658 -4607514 + RSINE1 SINE B4 3 130 -35 9 1496 274 337 0 11 chr9 119469149 119469236 -4606936 - MER5A1 DNA MER1_type -1 165 80 9 1496 345 24 0 0 chr9 119470443 119470485 -4605687 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1496 387 225 0 36 chr9 119473185 119473268 -4602904 + B4 SINE B4 195 274 -18 9 1496 377 201 42 16 chr9 119473331 119473639 -4602533 + (TG)n Simple_repeat Simple_repeat 1 315 0 9 1496 433 167 53 0 chr9 119473664 119473814 -4602358 + (TG)n Simple_repeat Simple_repeat 2 159 0 9 1496 274 245 74 11 chr9 119474829 119474924 -4601248 + Charlie4a DNA MER1_type 309 409 -99 9 1496 1229 258 65 111 chr9 119476192 119476589 -4599583 + MTEb LTR MaLR 1 379 0 9 1496 221 383 28 18 chr9 119478054 119478163 -4598009 + MIR SINE MIR 13 122 -140 9 1496 601 153 8 67 chr9 119478204 119478323 -4597849 + B1_Mur2 SINE Alu 37 148 -1 9 1496 221 300 0 0 chr9 119478323 119478383 -4597789 + GA-rich Low_complexity Low_complexity 5 64 0 9 1496 702 249 39 93 chr9 119478791 119478995 -4597177 + B3A SINE B2 2 194 -4 9 1496 231 36 0 0 chr9 119479159 119479187 -4596985 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1496 381 43 0 0 chr9 119479632 119479679 -4596493 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1496 249 322 84 0 chr9 119479723 119479811 -4596361 - MIRc SINE MIR -70 198 98 9 1496 354 281 80 53 chr9 119480108 119480296 -4595876 + MER33 DNA MER1_type 109 301 -23 9 1496 324 0 0 0 chr9 119481216 119481252 -4594920 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1496 189 0 0 0 chr9 119481521 119481542 -4594630 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1496 210 71 0 0 chr9 119482207 119482235 -4593937 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1496 229 241 34 92 chr9 119483797 119483916 -4592256 + RLTR9F LTR ERVK 288 399 -16 9 1496 228 254 0 0 chr9 119484867 119484922 -4591250 + L2 LINE L2 1987 2041 -1378 9 1496 239 309 25 115 chr9 119485121 119485278 -4590894 + MER5B DNA MER1_type 25 167 -11 9 1496 258 431 32 5 chr9 119485608 119485797 -4590375 + MIR SINE MIR 69 262 0 9 1496 214 188 138 15 chr9 119486523 119486588 -4589584 + MIR SINE MIR 51 123 -85 9 1496 208 95 0 45 chr9 119488141 119488185 -4587987 + (CGGGGG)n Simple_repeat Simple_repeat 5 46 0 9 1496 378 0 0 0 chr9 119489218 119489260 -4586912 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1496 406 245 0 13 chr9 119489424 119489577 -4586595 + (CA)n Simple_repeat Simple_repeat 2 152 0 9 1496 607 257 29 14 chr9 119489605 119489743 -4586429 - B1_Mur1 SINE Alu -2 147 8 9 1496 282 307 57 143 chr9 119489743 119489779 -4586393 - B4 SINE B4 -68 223 65 9 1496 537 16 0 0 chr9 119490371 119490433 -4585739 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1496 1028 221 169 53 chr9 119490759 119491060 -4585112 - MTEa LTR MaLR 0 379 44 9 1496 316 335 98 20 chr9 119491288 119491492 -4584680 - L1ME3A LINE L1 -27 6146 5927 9 1496 582 256 0 118 chr9 119491526 119491712 -4584460 - RSINE1 SINE B4 -1 164 1 9 1496 338 272 95 70 chr9 119491745 119491903 -4584269 - RSINE1 SINE B4 -3 162 1 9 1496 698 285 80 72 chr9 119492033 119492495 -4583677 - L1ME3A LINE L1 -392 5770 5311 9 1496 396 0 0 0 chr9 119493015 119493059 -4583113 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1496 543 262 184 98 chr9 119493060 119493305 -4582867 - B4 SINE B4 -25 267 2 9 1496 1185 132 38 11 chr9 119493316 119493499 -4582673 - B2_Mm2 SINE B2 -7 188 1 9 1496 558 225 11 86 chr9 119494029 119494204 -4581968 - RSINE1 SINE B4 -1 164 3 9 1496 801 183 233 6 chr9 119494235 119494411 -4581761 - B3 SINE B2 0 216 1 9 1496 189 392 94 31 chr9 119494972 119495164 -4581008 + MIRc SINE MIR 14 217 -51 1 1496 972 268 5 9 chr9 119495321 119495543 -4580629 - ID_B1 SINE B4 -2 222 2 1 1496 817 48 0 0 chr9 119495800 119495905 -4580267 - B1_Mus1 SINE Alu -34 114 10 1 1496 252 59 0 0 chr9 119496834 119496868 -4579304 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1496 544 272 197 15 chr9 119496902 119497100 -4579072 + B4 SINE B4 1 234 -58 1 1496 336 24 0 0 chr9 119497121 119497162 -4579010 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1496 222 366 0 0 chr9 119497175 119497268 -4578904 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1496 323 352 114 34 chr9 119497290 119497587 -4578585 + L1MC2 LINE L1 5842 6162 -182 1 1496 1072 178 119 0 chr9 119498743 119498945 -4577227 - URR1A DNA MER1_type 0 226 1 1 1496 665 210 13 53 chr9 119499119 119499270 -4576902 + B1F SINE Alu 5 149 0 1 1496 380 250 0 0 chr9 119499273 119499349 -4576823 + PB1D9 SINE Alu 5 80 -40 1 1496 333 0 0 0 chr9 119499375 119499412 -4576760 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1496 235 280 26 13 chr9 119499650 119499726 -4576446 + CT-rich Low_complexity Low_complexity 2 78 0 1 1496 369 262 26 86 chr9 119499733 119499850 -4576322 - PB1D7 SINE Alu -2 118 9 1 1496 26 0 0 0 chr9 119500019 119500045 -4576127 + AT_rich Low_complexity Low_complexity 1 26 0 1 1496 932 164 129 0 chr9 119500086 119500257 -4575915 - B3 SINE B2 -3 213 21 2 1496 216 247 123 0 chr9 119500196 119500269 -4575903 - B4 SINE B4 -210 82 1 3 1496 198 0 0 0 chr9 119500275 119500297 -4575875 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1496 261 0 0 0 chr9 119500440 119500469 -4575703 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 5 1496 550 104 0 20 chr9 119500621 119500719 -4575453 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 1496 677 243 101 22 chr9 119500723 119500950 -4575222 - B4A SINE B4 -44 248 4 7 1496 225 211 0 0 chr9 119500993 119501050 -4575122 + (TA)n Simple_repeat Simple_repeat 2 58 0 8 1496 276 307 21 64 chr9 119501738 119501832 -4574340 - PB1D10 SINE Alu -27 90 1 9 1496 593 263 26 26 chr9 119501832 119501915 -4574257 - ID SINE ID -141 83 1 1 1496 274 274 147 0 chr9 119501919 119502014 -4574158 - MER58C DNA MER1_type -105 110 2 1 1496 799 174 14 7 chr9 119502239 119502384 -4573788 + B1_Mus2 SINE Alu 1 146 -1 1 1496 3429 43 2 0 chr9 119502417 119502816 -4573356 + MTB LTR MaLR 1 400 0 1 1496 424 310 10 0 chr9 119503039 119503139 -4573033 + B3A SINE B2 60 160 -38 1 1496 306 0 0 0 chr9 119503144 119503178 -4572994 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1496 2005 128 97 0 chr9 119503298 119503619 -4572553 + RMER1B Other Other 511 862 -204 1 1496 632 118 288 0 chr9 119503621 119503774 -4572398 + B3 SINE B2 20 216 0 1 1496 657 0 0 0 chr9 119503786 119503859 -4572313 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 1 1496 587 235 5 97 chr9 119503873 119504080 -4572092 + RMER1A Other Other 825 1012 -18 1 1496 1731 230 70 18 chr9 119504253 119504651 -4571521 + MTD LTR MaLR 1 419 0 2 1496 777 183 0 27 chr9 119504882 119505067 -4571105 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1496 216 97 0 0 chr9 119505822 119505853 -4570319 + (TCCCC)n Simple_repeat Simple_repeat 2 32 0 2 1496 228 273 254 0 chr9 119506057 119506167 -4570005 - L2a LINE L2 -2 3424 3287 2 1496 246 357 0 12 chr9 119506681 119506766 -4569406 + MLT1J-int LTR MaLR 1255 1338 -49 2 1496 331 258 149 69 chr9 119507329 119507504 -4568668 - B3A SINE B2 -6 192 4 2 1496 680 248 96 122 chr9 119507555 119507941 -4568231 - MTE2a LTR MaLR 0 379 4 2 1496 338 287 89 25 chr9 119508514 119508750 -4567422 - L1ME3B LINE L1 -197 5967 5717 2 1496 1073 172 94 0 chr9 119508783 119508975 -4567197 - B3 SINE B2 -3 213 4 2 1496 702 218 35 7 chr9 119508975 119509118 -4567054 - ID_B1 SINE B4 0 224 78 2 1496 456 113 28 0 chr9 119509134 119509205 -4566967 - ORR1A4 LTR MaLR 0 394 322 3 1496 651 140 0 42 chr9 119509177 119509296 -4566876 - ORR1A4 LTR MaLR -215 114 1 3 1496 837 304 41 46 chr9 119509297 119509690 -4566482 - L1ME3B LINE L1 -549 5691 5301 2 1496 406 347 75 11 chr9 119509858 119510123 -4566049 - Lx8 LINE L1 -181 7292 7011 3 1496 945 118 0 14 chr9 119510233 119510371 -4565801 - B1_Mur4 SINE Alu 0 150 15 3 1496 1417 75 0 21 chr9 119510404 119510594 -4565578 - B2_Mm2 SINE B2 -9 186 1 3 1496 983 251 48 99 chr9 119510707 119510953 -4565219 + B4A SINE B4 6 240 -52 3 1496 1682 185 53 122 chr9 119510953 119511402 -4564770 + MTD LTR MaLR 2 419 0 3 1496 983 251 48 99 chr9 119511402 119511447 -4564725 + B4A SINE B4 241 282 -10 3 1496 1014 217 30 70 chr9 119512032 119512334 -4563838 - B4A SINE B4 -1 291 2 3 1496 345 264 107 24 chr9 119512352 119512558 -4563614 - L1MEe LINE L1 -4121 733 511 3 1496 238 314 11 34 chr9 119513014 119513103 -4563069 + RMER12 LTR ERVK 741 827 -495 3 1496 580 271 222 50 chr9 119513103 119513480 -4562692 - Lx9 LINE L1 -226 7418 6977 3 1496 494 298 30 37 chr9 119513762 119513926 -4562246 - RSINE1 SINE B4 0 165 3 4 1496 752 288 76 69 chr9 119514068 119514530 -4561642 - MLT1C LTR MaLR 0 467 3 4 1496 1400 218 102 81 chr9 119514578 119514972 -4561200 + MTD LTR MaLR 18 419 0 4 1496 1189 236 156 38 chr9 119515584 119515864 -4560308 + MTEb LTR MaLR 1 321 -58 4 1496 417 0 46 31 chr9 119515864 119515929 -4560243 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 4 1496 1189 236 156 38 chr9 119515929 119515987 -4560185 + MTEb LTR MaLR 322 379 0 4 1496 931 179 113 10 chr9 119515989 119516192 -4559980 - MTD LTR MaLR -1 418 195 4 1496 820 241 15 35 chr9 119516236 119516438 -4559734 - MTD LTR MaLR -206 213 16 4 1496 224 284 176 0 chr9 119516486 119516560 -4559612 + L2a LINE L2 3339 3425 -1 4 1496 708 219 54 14 chr9 119516937 119517085 -4559087 + B3A SINE B2 15 168 -30 4 1496 276 100 0 0 chr9 119517090 119517130 -4559042 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1496 973 237 111 15 chr9 119517256 119517517 -4558655 + B4 SINE B4 1 286 -6 4 1496 232 206 0 29 chr9 119519558 119519628 -4556544 + L1MA5 LINE L1 6233 6300 0 5 1496 646 212 18 104 chr9 119520631 119520794 -4555378 - B1F SINE Alu 0 149 1 5 1496 788 226 78 44 chr9 119521327 119521531 -4554641 + MTEa LTR MaLR 1 211 -168 5 1496 378 321 72 72 chr9 119522136 119522344 -4553828 + B4A SINE B4 81 288 -4 5 1496 387 0 0 0 chr9 119522353 119522396 -4553776 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1496 361 159 35 0 chr9 119522400 119522513 -4553659 + (CAGA)n Simple_repeat Simple_repeat 2 118 0 5 1496 1322 62 6 0 chr9 119522927 119523104 -4553068 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 5 1496 294 361 64 38 chr9 119523126 119523362 -4552810 + L2b LINE L2 3115 3356 -19 5 1496 262 273 0 25 chr9 119525172 119525251 -4550921 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1496 712 245 252 20 chr9 119527408 119527706 -4548466 + MTEb LTR MaLR 1 367 -12 5 1496 297 0 0 0 chr9 119528146 119528179 -4547993 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 6 1496 999 272 29 78 chr9 119528280 119528587 -4547585 - B4A SINE B4 0 292 1 6 1496 12784 22 1 0 chr9 119529056 119530593 -4545579 + L1Md_T LINE L1 4049 5586 -297 6 1496 9199 4 0 0 chr9 119530593 119531589 -4544583 + L1Md_T LINE L1 5587 6582 0 6 1496 813 224 40 195 chr9 119532233 119532561 -4543611 - B4 SINE B4 -14 278 2 6 1496 231 238 0 0 chr9 119533580 119533622 -4542550 - RMER15 LTR ERVL -110 465 424 6 1496 854 286 52 0 chr9 119533643 119533891 -4542281 - Lx8 LINE L1 -236 7237 6977 6 1496 1510 224 13 97 chr9 119534078 119534469 -4541703 + ORR1E LTR MaLR 2 359 0 6 1496 301 266 60 37 chr9 119535208 119535338 -4540834 - MTE2a LTR MaLR -14 405 268 6 1496 259 304 64 43 chr9 119535677 119535818 -4540354 + MER5B DNA MER1_type 1 144 -34 6 1496 259 279 100 38 chr9 119536621 119536781 -4539391 + L1ME4a LINE L1 5313 5482 -642 6 1496 320 350 98 5 chr9 119537100 119537315 -4538857 + LTR16A1 LTR ERVL 222 456 0 7 1497 240 259 49 49 chr9 119537683 119537825 -4538347 + L1ME4a LINE L1 5947 6088 -36 6 1497 287 306 70 31 chr9 119538613 119538741 -4537431 + MER5A1 DNA MER1_type 1 133 -33 7 1497 324 309 65 0 chr9 119538848 119538971 -4537201 + MIRb SINE MIR 21 151 -117 7 1497 1043 209 102 25 chr9 119539374 119539663 -4536509 + MTD LTR MaLR 77 398 -21 7 1497 1040 236 72 22 chr9 119541618 119541629 -4534543 - B4A SINE B4 -1 291 281 7 1497 582 41 0 0 chr9 119541629 119541702 -4534470 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1497 1040 236 72 22 chr9 119541702 119541967 -4534205 - B4A SINE B4 -12 280 2 7 1497 210 385 10 0 chr9 119542307 119542403 -4533769 - MIR SINE MIR -12 250 154 7 1497 181 305 0 63 chr9 119542567 119542630 -4533542 - L2 LINE L2 -3298 121 63 7 1497 323 332 108 10 chr9 119543113 119543317 -4532855 + MIRb SINE MIR 36 259 -9 7 1497 250 189 170 0 chr9 119544218 119544271 -4531901 + MTEb LTR MaLR 3 64 -315 7 1497 573 247 144 17 chr9 119544286 119544459 -4531713 + MTEb LTR MaLR 185 379 0 7 1497 1018 266 42 0 chr9 119545017 119545276 -4530896 - MTEa LTR MaLR -109 270 1 8 1497 2602 63 0 3 chr9 119545668 119546000 -4530172 - L1_Mus1 LINE L1 0 6567 6237 8 1497 648 199 0 0 chr9 119546603 119547201 -4528971 + (TG)n Simple_repeat Simple_repeat 1 598 0 8 1497 1233 263 14 24 chr9 119547203 119547415 -4528757 - B4 SINE B4 0 292 80 8 1497 252 0 0 0 chr9 119547415 119547443 -4528729 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1497 1233 263 14 24 chr9 119547443 119547518 -4528654 - B4 SINE B4 -213 79 8 8 1497 706 258 88 0 chr9 119548585 119548767 -4527405 + B4A SINE B4 1 198 -94 8 1497 2463 204 88 64 chr9 119548790 119549445 -4526727 + Lx6 LINE L1 6780 7450 -10 8 1497 319 222 16 0 chr9 119549461 119549524 -4526648 + B4A SINE B4 228 291 -1 8 1497 432 0 0 0 chr9 119549573 119549621 -4526551 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1497 357 82 0 0 chr9 119549621 119549670 -4526502 + (GGGAGA)n Simple_repeat Simple_repeat 5 53 0 8 1497 339 148 34 0 chr9 119549872 119549960 -4526212 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 8 1497 768 283 27 0 chr9 119550729 119550916 -4525256 + ID_B1 SINE B4 31 222 -2 9 1497 234 219 124 79 chr9 119551000 119551089 -4525083 + MLT1J-int LTR MaLR 327 419 -968 9 1497 241 387 28 0 chr9 119551415 119551557 -4524615 + MLT1J-int LTR MaLR 693 838 -549 9 1497 285 280 13 0 chr9 119551704 119551779 -4524393 - ID4_ SINE ID -1 82 7 9 1497 23 33 0 0 chr9 119551780 119551810 -4524362 + AT_rich Low_complexity Low_complexity 1 30 0 9 1497 322 325 165 39 chr9 119552081 119553248 -4522924 + L1M5 LINE L1 2116 3429 -2717 9 1497 272 291 89 70 chr9 119553290 119553549 -4522623 + L1M5 LINE L1 3496 3759 -2387 9 1497 242 29 0 28 chr9 119553567 119553603 -4522569 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 9 1497 216 122 0 0 chr9 119553700 119553741 -4522431 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1497 822 237 52 0 chr9 119553748 119553921 -4522251 - B3A SINE B2 -16 182 1 9 1497 498 250 124 4 chr9 119553985 119554194 -4521978 - L1MA6 LINE L1 -5 6295 6067 9 1497 569 279 79 12 chr9 119554232 119554486 -4521686 + L1M5 LINE L1 4006 4276 -1870 9 1497 866 248 124 56 chr9 119554822 119555177 -4520995 - MTEa LTR MaLR 0 379 1 9 1497 254 189 4 0 chr9 119555201 119555256 -4520916 + L1M5 LINE L1 4736 4791 -1355 9 1497 243 0 0 0 chr9 119556215 119556242 -4519930 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1497 284 329 67 80 chr9 119556601 119556839 -4519333 + MIR SINE MIR 22 256 -6 1 1497 558 266 0 0 chr9 119557428 119557541 -4518631 + PB1D10 SINE Alu 2 114 -3 1 1497 378 204 0 0 chr9 119557545 119557633 -4518539 + GA-rich Low_complexity Low_complexity 3 90 0 1 1497 296 250 35 35 chr9 119557697 119557900 -4518272 + RMER17D LTR ERVK 245 447 -442 1 1497 779 289 39 21 chr9 119557914 119558197 -4517975 - B4A SINE B4 -4 288 1 1 1497 364 329 56 19 chr9 119558294 119558455 -4517717 + MIR SINE MIR 15 181 -81 1 1497 1014 245 25 8 chr9 119558881 119559120 -4517052 + B4A SINE B4 1 243 -49 1 1497 284 276 12 62 chr9 119559188 119559269 -4516903 + B4 SINE B4 216 292 0 1 1497 252 273 0 0 chr9 119559287 119559375 -4516797 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1497 525 266 3 0 chr9 119559389 119559730 -4516442 + (CA)n Simple_repeat Simple_repeat 1 342 0 1 1497 686 271 67 48 chr9 119560414 119560450 -4515722 - B4 SINE B4 -44 248 213 1 1497 561 250 0 108 chr9 119560450 119560607 -4515565 - B1_Mur1 SINE Alu -7 142 3 1 1497 686 271 67 48 chr9 119560607 119560779 -4515393 - B4 SINE B4 -80 212 36 1 1497 232 372 96 18 chr9 119560809 119561028 -4515144 + L2 LINE L2 1074 1309 -2110 1 1497 21 57 0 0 chr9 119561132 119561167 -4515005 + AT_rich Low_complexity Low_complexity 1 35 0 1 1497 332 94 0 19 chr9 119561331 119561385 -4514787 + (CCCCCT)n Simple_repeat Simple_repeat 4 56 0 1 1497 410 326 98 28 chr9 119561743 119562030 -4514142 + L2 LINE L2 2126 2432 -987 1 1497 312 137 0 0 chr9 119562691 119562742 -4513430 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1497 385 269 220 5 chr9 119562746 119562978 -4513194 - B4A SINE B4 -2 290 10 1 1497 225 252 23 47 chr9 119563356 119563485 -4512687 - RLTR40 LTR ERVK -126 691 566 1 1497 480 148 59 0 chr9 119563502 119563671 -4512501 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 1 1497 688 316 19 19 chr9 119563805 119564015 -4512157 - B4A SINE B4 -75 217 8 1 1497 403 284 81 23 chr9 119566032 119566205 -4509967 - MIR SINE MIR -67 195 13 1 1497 263 327 45 9 chr9 119566270 119566381 -4509791 - PB1D9 SINE Alu -5 115 1 1 1497 384 306 168 20 chr9 119566574 119566771 -4509401 + L2a LINE L2 3199 3424 -2 1 1497 304 302 152 13 chr9 119568829 119568980 -4507192 + LTR33 LTR ERVL 1 172 -343 1 1497 509 199 6 0 chr9 119569011 119569187 -4506985 + GA-rich Low_complexity Low_complexity 2 178 0 1 1497 184 143 63 0 chr9 119569228 119569291 -4506881 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 1 1497 364 328 87 6 chr9 119569416 119569588 -4506584 + LTR33 LTR ERVL 322 507 -8 1 1497 908 285 37 60 chr9 119571528 119571827 -4504345 - B4 SINE B4 0 292 1 1 1497 618 14 0 0 chr9 119572263 119572334 -4503838 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1497 483 63 0 0 chr9 119572334 119572397 -4503775 + (GGA)n Simple_repeat Simple_repeat 2 64 0 1 1497 769 251 253 10 chr9 119572858 119573158 -4503014 + MTD LTR MaLR 33 405 -14 1 1497 495 0 0 0 chr9 119573535 119573590 -4502582 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1497 467 315 80 22 chr9 119574364 119574588 -4501584 + LTR16A1 LTR ERVL 194 430 -26 1 1497 766 247 127 23 chr9 119574600 119574863 -4501309 - B4 SINE B4 -5 287 2 1 1497 515 263 8 0 chr9 119575356 119575474 -4500698 + PB1D9 SINE Alu 2 120 0 1 1497 219 323 107 29 chr9 119575706 119575840 -4500332 + MIRc SINE MIR 1 154 -122 1 1497 237 183 0 53 chr9 119576330 119576405 -4499767 + T-rich Low_complexity Low_complexity 5 75 0 1 1497 35 41 0 0 chr9 119576442 119576491 -4499681 + AT_rich Low_complexity Low_complexity 1 49 0 1 1497 818 239 160 82 chr9 119577002 119577284 -4498888 + MTEa LTR MaLR 74 377 -2 1 1497 222 242 63 16 chr9 119577548 119577611 -4498561 + L2c LINE L2 3101 3166 -221 1 1497 667 348 45 39 chr9 119577709 119578041 -4498131 + MER102b DNA MER1_type 2 335 -6 1 1497 252 120 0 0 chr9 119578071 119578121 -4498051 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1497 287 299 107 45 chr9 119578201 119578313 -4497859 + MLT1H LTR MaLR 36 154 -395 1 1497 238 297 76 11 chr9 119578346 119578438 -4497734 + MLT1H LTR MaLR 205 302 -247 1 1497 333 336 161 0 chr9 119578465 119578608 -4497564 + MLT1H LTR MaLR 384 549 0 1 1497 528 328 122 55 chr9 119578663 119578934 -4497238 - B4A SINE B4 -3 289 1 1 1497 233 249 29 70 chr9 119579945 119580025 -4496147 + BC1_Mm scRNA scRNA 4 80 -72 1 1497 212 318 80 53 chr9 119580025 119580058 -4496114 + ID_B1 SINE B4 4 119 -105 1 1497 483 73 0 0 chr9 119580499 119580567 -4495605 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1497 388 318 84 7 chr9 119581977 119582132 -4494040 - MER5A DNA MER1_type -2 187 21 1 1497 852 243 127 9 chr9 119582202 119582414 -4493758 + B4A SINE B4 56 292 0 1 1497 388 315 23 69 chr9 119582904 119582931 -4493241 - ID_B1 SINE B4 -22 202 146 1 1497 453 265 0 0 chr9 119582931 119583029 -4493143 - PB1D10 SINE Alu -16 101 4 1 1497 388 315 23 69 chr9 119583029 119583078 -4493094 - ID_B1 SINE B4 -22 145 37 1 1497 359 338 15 7 chr9 119583105 119583242 -4492930 + B1F1 SINE Alu 1 138 -11 1 1497 396 341 91 105 chr9 119583307 119583812 -4492360 + HAL1 LINE L1 984 1481 -1026 1 1497 1527 171 70 22 chr9 119583815 119584127 -4492045 - ORR1D1 LTR MaLR 0 374 48 1 1497 408 237 32 0 chr9 119584389 119584482 -4491690 - ORR1D1 LTR MaLR -278 96 1 1 1497 321 293 49 70 chr9 119584780 119584923 -4491249 + HAL1 LINE L1 1895 2034 -473 1 1497 816 208 87 38 chr9 119584973 119585158 -4491014 + B3A SINE B2 2 195 -3 1 1497 224 106 0 115 chr9 119585735 119585831 -4490341 + C-rich Low_complexity Low_complexity 3 87 0 1 1497 262 241 17 33 chr9 119585839 119585899 -4490273 - RSINE1 SINE B4 -105 60 2 1 1497 622 307 139 90 chr9 119586013 119586395 -4489777 + L1_Mur3 LINE L1 4398 4753 -1390 1 1497 189 0 0 0 chr9 119586395 119586416 -4489756 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 1497 494 307 139 90 chr9 119586416 119586690 -4489482 + L1_Mur3 LINE L1 4754 5102 -1041 1 1497 1161 45 0 0 chr9 119586690 119586823 -4489349 + B1_Mm SINE Alu 1 133 -14 1 1497 265 24 23 23 chr9 119586830 119586873 -4489299 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1497 868 308 136 45 chr9 119586873 119587479 -4488693 + L1_Mur3 LINE L1 5092 5772 -528 1 1497 665 317 118 27 chr9 119587665 119588073 -4488099 - Charlie25 DNA MER1_type -94 2430 1986 1 1497 381 22 0 0 chr9 119588170 119588216 -4487956 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1497 298 291 239 0 chr9 119588288 119588405 -4487767 - B4A SINE B4 -147 145 1 1 1497 626 350 93 0 chr9 119588594 119588883 -4487289 - Charlie25 DNA MER1_type -2019 505 190 1 1497 410 339 8 0 chr9 119589168 119589298 -4486874 + RSINE1 SINE B4 3 133 -32 1 1497 410 94 16 0 chr9 119589865 119589929 -4486243 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1497 230 288 45 131 chr9 119590366 119590432 -4485740 + L1MC LINE L1 5539 5598 -2284 1 1497 562 229 123 30 chr9 119590432 119590635 -4485537 + ID_B1 SINE B4 3 224 0 1 1497 230 288 45 131 chr9 119590635 119590744 -4485428 + L1MC LINE L1 5599 5699 -2183 1 1497 465 298 10 29 chr9 119590852 119591056 -4485116 - L1M5 LINE L1 -1516 4630 4431 1 1497 788 203 9 25 chr9 119591814 119591992 -4484180 - ID_B1 SINE B4 -44 248 80 1 1497 676 262 126 42 chr9 119592066 119592257 -4483915 - B4 SINE B4 -4 288 82 1 1497 493 248 17 8 chr9 119592366 119592484 -4483688 - RSINE1 SINE B4 -45 120 2 1 1497 240 35 0 0 chr9 119593059 119593088 -4483084 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1497 542 252 38 0 chr9 119593088 119593219 -4482953 - B1F1 SINE Alu -5 144 9 1 1497 281 242 0 0 chr9 119593166 119593228 -4482944 - B4A SINE B4 -146 146 85 1 1497 422 316 140 30 chr9 119593333 119593597 -4482575 - MLT1A LTR MaLR -9 365 73 1 1497 224 255 75 84 chr9 119593860 119593878 -4482294 + PB1 SINE Alu 22 125 0 1 1497 386 218 23 0 chr9 119593878 119593965 -4482207 + ID_B1 SINE B4 133 221 -3 1 1497 210 71 0 0 chr9 119594045 119594073 -4482099 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1497 395 296 163 22 chr9 119594073 119594197 -4481975 - RSINE1 SINE B4 -10 155 12 1 1497 239 256 39 93 chr9 119594360 119594489 -4481683 + MLT1A1 LTR MaLR 269 390 -18 1 1497 373 339 107 65 chr9 119594591 119594992 -4481180 - L1ME3A LINE L1 -346 5827 5410 1 1497 1285 175 4 22 chr9 119595138 119595366 -4480806 + URR1B DNA MER1_type 2 225 0 1 1497 760 260 33 6 chr9 119595371 119595553 -4480619 + B3A SINE B2 1 187 -11 1 1497 341 274 23 30 chr9 119595582 119595714 -4480458 - L1ME3A LINE L1 -976 5170 5040 1 1497 364 297 144 53 chr9 119595953 119596383 -4479789 - L1ME3A LINE L1 -1420 4726 4258 1 1497 469 236 61 198 chr9 119596389 119596632 -4479540 - B3A SINE B2 0 216 9 1 1497 242 252 178 20 chr9 119596701 119596802 -4479370 + MER5B DNA MER1_type 61 177 -1 1 1497 309 217 43 0 chr9 119597287 119597356 -4478816 - ID4 SINE ID -10 73 2 1 1497 315 337 166 15 chr9 119598462 119598667 -4477505 - Lx6 LINE L1 -15 7445 7210 1 1497 192 40 0 0 chr9 119598677 119598702 -4477470 + (GTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1497 288 0 0 0 chr9 119598715 119598747 -4477425 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1497 1009 32 0 0 chr9 119598747 119598870 -4477302 - B1_Mus1 SINE Alu -9 139 17 1 1497 295 292 73 1 chr9 119599420 119599554 -4476618 + MIR3 SINE MIR 73 214 -48 1 1497 199 330 22 43 chr9 119599773 119599865 -4476307 + L3 LINE CR1 4306 4395 -94 1 1497 378 0 0 0 chr9 119600989 119601031 -4475141 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1497 662 232 98 183 chr9 119601043 119601349 -4474823 - B4 SINE B4 -12 280 1 1 1497 182 105 0 26 chr9 119601702 119601741 -4474431 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1497 1936 137 58 7 chr9 119601768 119602076 -4474096 + ORR1A3 LTR MaLR 1 324 -2 1 1497 1028 268 40 47 chr9 119602078 119602376 -4473796 + MTE2a LTR MaLR 76 371 -8 1 1497 235 359 158 13 chr9 119602413 119602647 -4473525 - Charlie1 DNA MER1_type -2509 272 5 1 1497 202 143 24 0 chr9 119602682 119602724 -4473448 + T-rich Low_complexity Low_complexity 2 44 0 1 1497 1246 55 0 7 chr9 119602727 119602875 -4473297 - B1_Mus1 SINE Alu 0 148 2 1 1497 185 310 83 14 chr9 119603635 119603707 -4472465 + L2a LINE L2 557 633 -2786 1 1497 1874 119 87 76 chr9 119603766 119604084 -4472088 + RMER4B LTR ERVK 18 345 -240 2 1497 1226 79 0 17 chr9 119604084 119604265 -4471907 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1497 1874 181 60 69 chr9 119604265 119604406 -4471766 + RMER4B LTR ERVK 338 465 -1 2 1497 543 335 0 19 chr9 119605022 119605180 -4470992 + RSINE1 SINE B4 9 163 -2 2 1497 544 283 6 86 chr9 119605238 119605412 -4470760 + RSINE1 SINE B4 2 161 -4 2 1497 260 328 131 10 chr9 119605557 119605763 -4470409 + L2a LINE L2 1956 2186 -1233 1 1497 254 311 139 30 chr9 119605854 119606089 -4470083 - MIRc SINE MIR -2 260 14 2 1497 245 308 125 0 chr9 119606149 119606253 -4469919 + L2a LINE L2 2406 2522 -897 1 1497 363 167 62 0 chr9 119606860 119606956 -4469216 + G-rich Low_complexity Low_complexity 1 102 0 2 1497 1024 270 36 111 chr9 119607160 119607573 -4468599 + MTC LTR MaLR 19 400 -21 2 1497 232 278 139 0 chr9 119607947 119608019 -4468153 - L2a LINE L2 -5 3421 3340 2 1497 9538 141 21 4 chr9 119608325 119609125 -4467047 - L1_Mur3 LINE L1 -868 5012 4200 2 1497 222 37 0 0 chr9 119609125 119609152 -4467020 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1497 9538 141 21 4 chr9 119609152 119610014 -4466158 - L1_Mur3 LINE L1 -1681 4199 3323 2 1497 4661 215 48 48 chr9 119610023 119611781 -4464391 + Lx5 LINE L1 4999 6760 -290 2 1497 270 0 0 0 chr9 119611781 119611811 -4464361 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2 1497 3160 257 84 94 chr9 119611811 119612102 -4464070 + Lx5 LINE L1 6761 7044 -6 2 1497 1467 215 33 36 chr9 119612097 119612517 -4463655 + Lx6 LINE L1 5722 6140 -1320 2 1497 1853 306 57 47 chr9 119612503 119613521 -4462651 + Lx5 LINE L1 6023 7050 0 2 1497 220 191 0 0 chr9 119613894 119613936 -4462236 + CT-rich Low_complexity Low_complexity 2 43 0 2 1497 833 277 82 48 chr9 119613996 119614265 -4461907 - B4 SINE B4 -14 278 1 2 1497 619 192 68 15 chr9 119614303 119614435 -4461737 - B1F SINE Alu -10 139 1 2 1497 265 271 63 70 chr9 119614435 119614469 -4461703 - MT2B2 LTR ERVL -428 156 124 2 1497 439 332 46 25 chr9 119614555 119614796 -4461376 + L2a LINE L2 3181 3426 0 1 1497 465 90 0 0 chr9 119615571 119615638 -4460534 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 1497 181 139 0 44 chr9 119615641 119615686 -4460486 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1497 1120 267 14 40 chr9 119616459 119616756 -4459416 + B4 SINE B4 4 292 0 2 1497 397 263 153 0 chr9 119616881 119617018 -4459154 + MIRc SINE MIR 91 248 -20 2 1497 840 191 7 13 chr9 119617659 119617808 -4458364 - B1_Mur2 SINE Alu 0 149 2 2 1497 624 281 24 48 chr9 119617822 119617990 -4458182 - B4 SINE B4 -128 164 1 2 1497 303 230 0 0 chr9 119618705 119618792 -4457380 + (TG)n Simple_repeat Simple_repeat 1 87 0 2 1497 603 248 12 56 chr9 119618839 119619001 -4457171 - RSINE1 SINE B4 -9 156 2 2 1497 227 325 0 48 chr9 119619070 119619235 -4456937 + (CCCCAG)n Simple_repeat Simple_repeat 3 159 0 2 1497 183 332 69 53 chr9 119619263 119619508 -4456664 + L2b LINE L2 2936 3184 -191 2 1497 215 247 37 49 chr9 119619976 119620057 -4456115 + MIR SINE MIR 34 113 -95 2 1497 208 314 28 14 chr9 119620631 119620702 -4455470 + MIR3 SINE MIR 113 184 -24 2 1497 1234 43 0 0 chr9 119620790 119620931 -4455241 + B1_Mus2 SINE Alu 1 141 -6 2 1497 864 158 0 0 chr9 119620931 119621083 -4455089 + GA-rich Low_complexity Low_complexity 1 152 0 2 1497 237 217 0 0 chr9 119621210 119621293 -4454879 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1497 346 182 9 9 chr9 119621339 119621450 -4454722 + (TG)n Simple_repeat Simple_repeat 1 111 0 2 1497 741 171 0 0 chr9 119621466 119621636 -4454536 + (TG)n Simple_repeat Simple_repeat 1 170 0 2 1497 349 144 0 40 chr9 119621657 119621730 -4454442 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1497 270 0 0 0 chr9 119621730 119621760 -4454412 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1497 349 144 0 40 chr9 119621760 119621787 -4454385 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1497 441 288 94 65 chr9 119621798 119622073 -4454099 - B4 SINE B4 -7 285 3 2 1497 270 339 23 117 chr9 119622663 119622927 -4453245 + L2b LINE L2 3127 3365 -10 2 1497 1007 290 3 29 chr9 119623221 119623537 -4452635 + Lx8 LINE L1 6974 7281 -192 2 1497 324 0 0 0 chr9 119623564 119623600 -4452572 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1497 234 222 19 0 chr9 119623623 119623677 -4452495 + Lx8 LINE L1 7416 7470 -3 2 1497 197 338 27 0 chr9 119623709 119623783 -4452389 + MIR SINE MIR 55 130 -132 2 1497 183 42 0 0 chr9 119624135 119624159 -4452013 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 2 1497 213 39 0 0 chr9 119624886 119624912 -4451260 + (CAA)n Simple_repeat Simple_repeat 1 26 0 2 1497 221 299 173 31 chr9 119625243 119625405 -4450767 - MIR SINE MIR -76 186 2 2 1497 231 103 0 0 chr9 119626393 119626432 -4449740 + (CAT)n Simple_repeat Simple_repeat 2 40 0 2 1497 408 236 13 16 chr9 119626824 119627132 -4449040 + GA-rich Low_complexity Low_complexity 1 307 0 2 1497 198 71 0 0 chr9 119629054 119629082 -4447090 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1497 529 235 0 0 chr9 119629097 119629199 -4446973 - PB1D9 SINE Alu -17 103 2 2 1497 203 145 0 100 chr9 119629393 119629523 -4446649 + CT-rich Low_complexity Low_complexity 1 117 0 2 1497 416 244 7 180 chr9 119629617 119629767 -4446405 + B1F SINE Alu 5 128 -21 2 1497 425 293 47 0 chr9 119629780 119629971 -4446201 + L1MC4a LINE L1 7679 7878 -4 2 1497 927 211 91 20 chr9 119629992 119630190 -4445982 + B3 SINE B2 5 216 0 2 1497 379 266 87 52 chr9 119630207 119630322 -4445850 + PB1D7 SINE Alu 1 119 -1 2 1497 207 353 0 0 chr9 119630470 119630538 -4445634 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1497 1617 244 22 22 chr9 119630984 119631348 -4444824 + ORR1D2 LTR MaLR 1 364 -6 2 1497 256 305 114 48 chr9 119631926 119632136 -4444036 + L2 LINE L2 2625 2848 -571 2 1497 1883 187 45 32 chr9 119632442 119632817 -4443355 - MTD LTR MaLR -14 405 26 2 1497 330 26 0 0 chr9 119632822 119632861 -4443311 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1497 617 222 75 14 chr9 119633274 119633420 -4442752 + MTE2b LTR MaLR 19 173 -206 2 1497 417 301 12 1 chr9 119633434 119633541 -4442631 - PB1D10 SINE Alu -8 119 3 2 1497 213 305 24 24 chr9 119633554 119633638 -4442534 + (TATG)n Simple_repeat Simple_repeat 3 86 0 2 1497 647 128 9 0 chr9 119633700 119633809 -4442363 + (TCC)n Simple_repeat Simple_repeat 3 112 0 2 1497 806 221 0 0 chr9 119633820 119633969 -4442203 - B1_Mur1 SINE Alu 0 149 1 2 1497 216 322 143 5 chr9 119633973 119634084 -4442088 - B1_Mm SINE Alu -21 126 4 2 1497 640 275 20 20 chr9 119634084 119634171 -4442001 - B4 SINE B4 -202 90 4 2 1497 1202 281 15 7 chr9 119635166 119635438 -4440734 - MTEa LTR MaLR -83 296 23 2 1497 290 188 0 0 chr9 119635771 119635819 -4440353 + PB1D10 SINE Alu 27 74 -43 2 1497 2000 243 41 8 chr9 119636526 119637431 -4438741 + RCHARR1 DNA MER1_type 3 972 -2 2 1497 1049 247 3 116 chr9 119637772 119638101 -4438071 + B4A SINE B4 1 292 0 2 1497 637 261 51 70 chr9 119638291 119638472 -4437700 + ID_B1 SINE B4 13 193 -31 2 1497 3250 60 5 2 chr9 119638472 119638871 -4437301 - MTB LTR MaLR 0 400 1 2 1497 637 261 51 70 chr9 119638871 119638903 -4437269 + ID_B1 SINE B4 194 222 -2 2 1497 186 176 0 29 chr9 119639156 119639191 -4436981 - MIR3 SINE MIR -53 155 122 2 1497 561 110 0 0 chr9 119639890 119639990 -4436182 + (TG)n Simple_repeat Simple_repeat 2 101 0 2 1497 822 220 197 32 chr9 119640002 119640251 -4435921 - B4 SINE B4 -1 291 2 2 1497 188 326 98 39 chr9 119640278 119640380 -4435792 - MIRc SINE MIR -110 158 51 2 1497 407 276 164 28 chr9 119641512 119641762 -4434410 + B4A SINE B4 1 284 -8 2 1497 477 0 0 0 chr9 119641773 119641826 -4434346 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1497 252 0 0 0 chr9 119641826 119641853 -4434319 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1497 441 129 0 0 chr9 119642711 119642781 -4433391 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1497 712 291 7 0 chr9 119642789 119642930 -4433242 - RSINE1 SINE B4 -21 144 3 2 1497 386 316 77 117 chr9 119643385 119643711 -4432461 + ORR1E LTR MaLR 7 319 -40 2 1497 414 258 0 20 chr9 119644587 119644686 -4431486 - ID_B1 SINE B4 -9 215 119 2 1497 551 257 18 0 chr9 119645694 119645807 -4430365 - RSINE1 SINE B4 -19 146 32 2 1497 225 304 25 75 chr9 119645926 119646086 -4430086 + RMER12 LTR ERVK 715 866 -456 2 1497 213 329 34 79 chr9 119646111 119646200 -4429972 - RSINE1 SINE B4 -6 159 75 2 1497 474 316 25 38 chr9 119646240 119646398 -4429774 - B4 SINE B4 -135 157 2 2 1497 1179 212 107 11 chr9 119646429 119646701 -4429471 - MTD LTR MaLR -1 418 121 2 1497 539 246 8 0 chr9 119646827 119646945 -4429227 - MTD LTR MaLR -297 124 6 2 1497 326 282 20 11 chr9 119647177 119647290 -4428882 - MLT1A1 LTR MaLR -15 393 276 2 1497 656 235 169 43 chr9 119647442 119647696 -4428476 + B4 SINE B4 1 286 -6 2 1497 315 0 0 0 chr9 119647829 119647864 -4428308 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1497 640 186 0 119 chr9 119647864 119648023 -4428149 - B1_Mur4 SINE Alu -6 144 5 2 1497 921 223 41 10 chr9 119649276 119649471 -4426701 - B3 SINE B2 -15 201 1 2 1497 21 0 0 0 chr9 119649633 119649654 -4426518 + AT_rich Low_complexity Low_complexity 1 21 0 2 1497 3307 58 0 0 chr9 119649658 119650057 -4426115 - L1_Mus1 LINE L1 0 6567 6169 2 1497 1265 258 34 89 chr9 119650579 119650861 -4425311 - MTE2b LTR MaLR -17 362 85 2 1497 969 169 130 10 chr9 119650861 119651053 -4425119 + B3 SINE B2 1 215 -1 2 1497 1265 258 34 89 chr9 119651053 119651153 -4425019 - MTE2b LTR MaLR -295 84 1 2 1497 432 97 0 0 chr9 119651359 119651421 -4424751 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1497 772 275 66 0 chr9 119651423 119651605 -4424567 - B4 SINE B4 -14 278 85 2 1497 1050 116 0 0 chr9 119651640 119651787 -4424385 - B1_Mus1 SINE Alu 0 148 2 2 1497 312 241 11 67 chr9 119651797 119651886 -4424286 - B4 SINE B4 -207 85 2 2 1497 269 302 120 22 chr9 119652211 119652394 -4423778 + MTE2b LTR MaLR 175 375 -4 2 1497 802 333 77 54 chr9 119652508 119652898 -4423274 - MLT1F2 LTR MaLR 0 560 162 2 1497 328 292 171 62 chr9 119652939 119653009 -4423163 - B4 SINE B4 -1 291 219 3 1497 342 0 0 0 chr9 119653009 119653047 -4423125 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 3 1497 328 292 171 62 chr9 119653047 119653122 -4423050 - B4 SINE B4 -74 218 130 3 1497 295 282 77 46 chr9 119653217 119653347 -4422825 - LTR33 LTR ERVL -353 162 29 3 1497 255 224 0 0 chr9 119653619 119653695 -4422477 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1497 422 345 0 0 chr9 119653762 119653930 -4422242 + (TG)n Simple_repeat Simple_repeat 1 168 0 3 1497 633 322 42 34 chr9 119653932 119654196 -4421976 - B4A SINE B4 0 292 27 3 1497 280 244 49 49 chr9 119654775 119654857 -4421315 - MIR SINE MIR -56 152 71 3 1497 316 302 47 72 chr9 119655674 119655717 -4420455 + B4A SINE B4 57 100 -192 3 1497 2967 43 0 3 chr9 119655717 119656064 -4420108 - ORR1A0 LTR MaLR 0 346 1 3 1497 316 265 29 67 chr9 119656064 119656152 -4420020 + B4A SINE B4 101 185 -107 3 1497 253 255 20 0 chr9 119656214 119656265 -4419907 + B1F2 SINE Alu 1 52 -97 3 1497 614 269 68 32 chr9 119656624 119656904 -4419268 - L1M5 LINE L1 -385 5794 5505 3 1497 229 231 50 25 chr9 119656936 119657016 -4419156 + CT-rich Low_complexity Low_complexity 1 82 0 3 1497 325 283 30 20 chr9 119657016 119657117 -4419055 - L1MD LINE L1 -990 5156 5055 3 1497 1184 141 27 5 chr9 119657130 119657316 -4418856 - B2_Mm2 SINE B2 -5 190 1 3 1497 321 233 66 55 chr9 119657345 119657436 -4418736 - B1F SINE Alu -23 126 35 3 1497 711 287 5 69 chr9 119657529 119657731 -4418441 - B3A SINE B2 -5 193 5 3 1497 271 298 21 31 chr9 119658051 119658148 -4418024 + ID_B1 SINE B4 2 97 -127 3 1497 242 333 93 72 chr9 119658154 119658293 -4417879 + MIRb SINE MIR 121 262 -6 3 1497 441 0 0 0 chr9 119658991 119659040 -4417132 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1497 457 302 107 15 chr9 119659071 119659276 -4416896 - B4A SINE B4 -10 282 59 3 1497 450 0 0 0 chr9 119659598 119659648 -4416524 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1497 834 269 126 19 chr9 119659683 119659945 -4416227 - B4 SINE B4 0 292 3 3 1497 638 271 8 7 chr9 119660478 119660629 -4415543 - B4 SINE B4 -78 146 3 3 1497 757 239 36 22 chr9 119660958 119661181 -4414991 + Lx7 LINE L1 7206 7431 -265 3 1497 321 260 33 3 chr9 119661184 119661490 -4414682 + (TG)n Simple_repeat Simple_repeat 1 315 0 3 1497 246 32 0 0 chr9 119661604 119661635 -4414537 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1497 1689 238 48 13 chr9 119661978 119662370 -4413802 - MTD LTR MaLR -13 406 1 3 1497 448 364 71 10 chr9 119662535 119662732 -4413440 + MER63A DNA AcHobo 2 210 0 3 1497 217 68 22 22 chr9 119665466 119665511 -4410661 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 3 1497 555 294 22 7 chr9 119666350 119666487 -4409685 + B1F1 SINE Alu 1 139 -10 3 1497 435 186 0 0 chr9 119666614 119666716 -4409456 + GA-rich Low_complexity Low_complexity 1 102 0 3 1497 494 239 121 14 chr9 119666716 119666856 -4409316 + B3A SINE B2 8 162 -36 3 1497 22 0 0 0 chr9 119666856 119666878 -4409294 + AT_rich Low_complexity Low_complexity 1 22 0 3 1497 288 0 0 0 chr9 119666880 119666912 -4409260 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1497 31 26 0 0 chr9 119668360 119668398 -4407774 + AT_rich Low_complexity Low_complexity 1 38 0 3 1497 489 252 128 15 chr9 119668398 119668531 -4407641 + B1_Mur1 SINE Alu 2 149 0 3 187 729 253 58 6 chr9 119668653 119668824 -4407348 + B3A SINE B2 1 180 -18 3 1498 668 238 77 0 chr9 119669396 119669564 -4406608 + B3A SINE B2 1 181 -17 3 1498 648 307 6 16 chr9 119669760 119669942 -4406230 - B3A SINE B2 -18 180 1 3 1498 442 257 89 30 chr9 119670256 119670549 -4405623 + L1M2 LINE L1 2992 3270 -2610 3 1498 501 215 54 36 chr9 119670637 119670748 -4405424 + B1F SINE Alu 1 113 -36 3 1498 635 223 8 4 chr9 119670793 119671043 -4405129 + GA-rich Low_complexity Low_complexity 1 251 0 3 1498 386 288 50 50 chr9 119671192 119671353 -4404819 + RSINE1 SINE B4 5 165 0 3 1498 235 243 78 39 chr9 119671369 119671446 -4404726 + ID_B1 SINE B4 144 223 -1 3 1498 28 29 0 0 chr9 119672106 119672141 -4404031 + AT_rich Low_complexity Low_complexity 1 35 0 3 1498 381 242 58 8 chr9 119672152 119672242 -4403930 + B4 SINE B4 2 97 -195 3 1498 486 224 25 75 chr9 119672242 119672401 -4403771 + ID_B1 SINE B4 1 151 -73 3 1498 423 239 17 8 chr9 119672382 119672500 -4403672 + B4A SINE B4 174 292 0 3 1498 366 221 0 0 chr9 119672501 119672637 -4403535 + (CA)n Simple_repeat Simple_repeat 2 137 0 3 1498 261 0 0 0 chr9 119672997 119673026 -4403146 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1498 978 298 69 7 chr9 119673032 119673306 -4402866 - B4A SINE B4 0 292 2 3 1498 246 240 0 0 chr9 119673410 119673460 -4402712 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 3 1498 988 221 44 0 chr9 119673472 119673676 -4402496 + B3 SINE B2 1 213 -3 3 1498 189 74 0 0 chr9 119674201 119674228 -4401944 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 3 1498 853 170 0 14 chr9 119674230 119674373 -4401799 - B1_Mur4 SINE Alu -1 149 9 3 1498 257 311 0 11 chr9 119675336 119675427 -4400745 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 1498 450 228 134 31 chr9 119675433 119675560 -4400612 - RSINE1 SINE B4 -8 157 18 3 1498 457 277 121 50 chr9 119675571 119675753 -4400419 - B4A SINE B4 -59 233 39 3 1498 518 286 115 77 chr9 119676468 119676676 -4399496 + MTD LTR MaLR 10 225 -194 3 1498 1848 176 114 5 chr9 119676676 119677053 -4399119 + MTC LTR MaLR 1 418 -3 3 1498 259 252 38 55 chr9 119677053 119677175 -4398997 + MTD LTR MaLR 201 419 0 3 1498 623 263 114 129 chr9 119677988 119678095 -4398077 + MTEb LTR MaLR 40 174 -205 3 1498 282 39 58 0 chr9 119678095 119678147 -4398025 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1498 623 263 114 129 chr9 119678147 119678336 -4397836 + MTEb LTR MaLR 175 342 -37 3 1498 1098 232 65 67 chr9 119678336 119678692 -4397480 + ORR1E LTR MaLR 1 355 -4 3 1498 623 263 114 129 chr9 119678692 119678735 -4397437 + MTEb LTR MaLR 343 374 -5 3 1498 330 350 68 52 chr9 119679926 119680176 -4395996 - L1M5 LINE L1 -787 5359 5106 3 1498 591 273 25 0 chr9 119680278 119680399 -4395773 - RSINE1 SINE B4 -40 125 2 3 1498 1985 152 30 95 chr9 119680435 119680834 -4395338 + ORR1C2 LTR MaLR 3 375 -9 3 1498 190 412 26 9 chr9 119680834 119680949 -4395223 - MIRc SINE MIR -126 142 26 3 1498 250 256 72 101 chr9 119681065 119681083 -4395089 + B1_Mus1 SINE Alu 7 141 -7 3 1498 477 217 8 50 chr9 119681083 119681204 -4394968 + ID_B1 SINE B4 102 217 -7 3 1498 1012 235 91 4 chr9 119681487 119681739 -4394433 - B4A SINE B4 -18 274 1 3 1498 311 312 48 78 chr9 119681798 119681965 -4394207 + MIR SINE MIR 19 180 -82 3 1498 397 234 100 15 chr9 119682314 119682444 -4393728 + RMER15 LTR ERVL 422 562 -13 3 1498 26 0 0 0 chr9 119682673 119682699 -4393473 + AT_rich Low_complexity Low_complexity 1 26 0 3 1498 837 264 49 38 chr9 119682715 119683003 -4393169 + B4A SINE B4 2 292 0 3 1498 500 297 65 56 chr9 119683799 119684013 -4392159 + MTEa LTR MaLR 1 216 -163 3 1498 419 152 0 12 chr9 119684013 119684093 -4392079 + CT-rich Low_complexity Low_complexity 2 80 0 3 1498 314 53 0 0 chr9 119684093 119684131 -4392041 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1498 554 156 127 9 chr9 119684131 119684241 -4391931 + MTEa LTR MaLR 201 323 -56 3 1498 644 277 47 183 chr9 119684269 119684697 -4391475 + MTD LTR MaLR 11 419 0 3 1498 438 181 28 34 chr9 119684945 119685122 -4391050 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 1498 295 202 26 17 chr9 119685155 119685271 -4390901 + (CA)n Simple_repeat Simple_repeat 1 117 0 3 1498 429 20 0 0 chr9 119685446 119685496 -4390676 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1498 589 277 73 98 chr9 119685733 119686061 -4390111 + ORR1E LTR MaLR 4 323 -36 3 1498 282 297 129 0 chr9 119686494 119686595 -4389577 - MER5A1 DNA MER1_type -27 139 26 3 1498 253 324 31 146 chr9 119688413 119688543 -4387629 + MLT1H LTR MaLR 262 376 -173 3 1498 2065 185 76 93 chr9 119688911 119689231 -4386941 + RLTR31A_Mm LTR ERVK 6 322 -262 3 1498 1488 64 21 0 chr9 119689231 119689419 -4386753 + B2_Mm2 SINE B2 2 193 -2 3 1498 2065 185 76 93 chr9 119689419 119689687 -4386485 + RLTR31A_Mm LTR ERVK 323 584 0 3 1498 228 250 115 16 chr9 119690333 119690394 -4385778 + MER20 DNA MER1_type 1 67 -152 3 1498 369 0 0 0 chr9 119690415 119690456 -4385716 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1498 1194 244 11 11 chr9 119690460 119690725 -4385447 - B4 SINE B4 -23 269 5 3 1498 505 301 64 6 chr9 119690727 119690884 -4385288 + MER20 DNA MER1_type 54 219 0 3 1498 486 0 0 0 chr9 119691348 119691402 -4384770 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1498 693 283 31 36 chr9 119691421 119691615 -4384557 - B4A SINE B4 -45 247 55 3 1498 1545 221 39 19 chr9 119691825 119692189 -4383983 + MTE2b LTR MaLR 9 379 0 3 1498 2465 76 41 0 chr9 119692206 119692520 -4383652 + ORR1A2 LTR MaLR 1 327 0 3 1498 292 333 37 0 chr9 119693492 119693600 -4382572 + Lx9 LINE L1 5826 5937 -1707 3 1498 543 261 90 31 chr9 119693762 119693984 -4382188 + B4A SINE B4 58 292 0 3 1498 1214 68 0 0 chr9 119694152 119694299 -4381873 - B1_Mm SINE Alu 0 147 1 3 1498 343 259 65 0 chr9 119694299 119694396 -4381776 - HAL1-3A_ME LINE L1 -778 2080 1977 3 1498 309 215 0 0 chr9 119694399 119694492 -4381680 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1498 250 261 79 89 chr9 119694499 119694600 -4381572 - B3A SINE B2 -16 182 83 3 1498 1276 61 27 27 chr9 119694720 119694733 -4381439 - B2_Mm2 SINE B2 -6 189 176 3 1498 248 0 31 0 chr9 119694733 119694765 -4381407 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1498 1276 61 27 27 chr9 119694765 119694936 -4381236 - B2_Mm2 SINE B2 -20 175 6 3 1498 557 292 99 59 chr9 119695442 119695715 -4380457 - B4 SINE B4 -1 291 8 3 1498 9163 132 84 11 chr9 119695746 119697908 -4378264 - Lx LINE L1 -25 6629 4274 4 1498 1029 136 82 0 chr9 119697933 119698117 -4378055 + URR1A DNA MER1_type 28 226 0 4 1498 1062 238 9 5 chr9 119698287 119698502 -4377670 - B3 SINE B2 0 216 1 4 1498 754 323 63 18 chr9 119698587 119698969 -4377203 + Lx8 LINE L1 6930 7328 -145 4 1498 25 41 0 20 chr9 119699538 119699558 -4376614 + AT_rich Low_complexity Low_complexity 1 20 0 4 1498 576 232 190 16 chr9 119699558 119699742 -4376430 - B3 SINE B2 0 216 1 4 1498 25 41 0 20 chr9 119699742 119699771 -4376401 + AT_rich Low_complexity Low_complexity 1 29 0 4 1498 633 301 26 91 chr9 119699835 119700170 -4376002 + MTD LTR MaLR 67 407 -12 4 1498 588 231 8 17 chr9 119700202 119700321 -4375851 - RSINE1 SINE B4 -45 120 3 4 1498 493 228 167 25 chr9 119700357 119700519 -4375653 + B3A SINE B2 1 185 -13 4 1498 204 158 0 0 chr9 119700530 119700568 -4375604 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1498 278 270 0 0 chr9 119700579 119700593 -4375579 + B4 SINE B4 72 85 -207 4 1498 393 210 123 0 chr9 119700593 119700674 -4375498 + PB1D10 SINE Alu 1 91 -26 4 1498 516 200 99 8 chr9 119700821 119700942 -4375230 + B1F2 SINE Alu 2 133 -16 4 1498 405 179 0 0 chr9 119700953 119701037 -4375135 + GA-rich Low_complexity Low_complexity 1 84 0 4 1498 315 253 13 39 chr9 119701064 119701142 -4375030 + RSINE1 SINE B4 53 128 -37 4 1498 570 114 0 0 chr9 119701149 119701237 -4374935 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1498 1154 62 0 20 chr9 119701275 119701424 -4374748 + B1_Mm SINE Alu 2 147 0 4 1498 1099 183 69 10 chr9 119702581 119702785 -4373387 - ID_B1 SINE B4 -8 216 1 4 1498 207 0 0 0 chr9 119703386 119703409 -4372763 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1498 1357 251 66 49 chr9 119703727 119703928 -4372244 + MTE2b LTR MaLR 1 203 -176 4 1498 507 33 0 0 chr9 119703928 119703989 -4372183 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1498 1357 251 66 49 chr9 119703989 119704135 -4372037 + MTE2b LTR MaLR 204 353 -26 4 1498 190 363 69 26 chr9 119705223 119705339 -4370833 + L2 LINE L2 2357 2477 -942 4 1498 244 298 39 84 chr9 119705454 119705608 -4370564 + RMER15 LTR ERVL 1 147 -428 4 1498 435 369 7 32 chr9 119705618 119705772 -4370400 - RSINE1 SINE B4 -10 155 6 4 1498 572 239 52 0 chr9 119705921 119706055 -4370117 + RMER15 LTR ERVL 422 562 -13 4 1498 180 417 12 0 chr9 119706070 119706154 -4370018 + L2 LINE L2 2683 2767 -652 4 1498 4631 240 81 34 chr9 119706167 119707117 -4369055 - MMAR1 DNA Mariner 0 1286 293 4 1498 180 0 0 0 chr9 119707117 119707137 -4369035 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1498 4631 240 81 34 chr9 119707137 119707239 -4368933 - MMAR1 DNA Mariner -994 292 172 4 1498 1541 129 4 4 chr9 119707239 119707464 -4368708 + URR1B DNA MER1_type 1 225 0 4 1498 4631 240 81 34 chr9 119707464 119707638 -4368534 - MMAR1 DNA Mariner -1115 171 3 4 1498 720 210 43 0 chr9 119707671 119707809 -4368363 + B1_Mur2 SINE Alu 5 148 -1 4 1498 616 65 0 31 chr9 119707811 119707907 -4368265 + (GGGA)n Simple_repeat Simple_repeat 3 95 0 4 1498 203 146 0 24 chr9 119707937 119707979 -4368193 + GA-rich Low_complexity Low_complexity 4 44 0 4 1498 23 0 0 0 chr9 119707979 119708002 -4368170 + AT_rich Low_complexity Low_complexity 1 23 0 4 1498 938 181 0 0 chr9 119708002 119708146 -4368026 + B1_Mur2 SINE Alu 6 149 0 4 1498 447 264 0 0 chr9 119708294 119708461 -4367711 + (CA)n Simple_repeat Simple_repeat 1 167 0 4 1498 342 45 0 0 chr9 119708874 119708918 -4367254 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 4 1498 984 230 66 52 chr9 119709207 119709556 -4366616 + RLTR42-int LTR ERVK 592 945 -4577 4 1498 180 0 0 0 chr9 119709628 119709648 -4366524 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 4 1498 1028 99 0 56 chr9 119709650 119709810 -4366362 - B2_Mm2 SINE B2 -44 151 1 4 1498 959 187 73 18 chr9 119709971 119710189 -4365983 + RLTR42-int LTR ERVK 1045 1274 -4248 4 1498 657 147 42 17 chr9 119710327 119710445 -4365727 - B1_Mus1 SINE Alu 0 148 28 4 1498 240 250 0 68 chr9 119710382 119710455 -4365717 - 4.5SRNA scRNA scRNA -8 86 19 4 1498 2912 218 98 17 chr9 119710465 119711484 -4364688 + RLTR42-int LTR ERVK 4380 5480 -42 4 1498 357 305 106 67 chr9 119711751 119711930 -4364242 + RLTR42 LTR ERVK 54 239 0 4 1498 510 254 110 122 chr9 119711931 119712258 -4363914 + ORR1E LTR MaLR 27 349 -10 4 1498 406 224 61 0 chr9 119713792 119713890 -4362282 - RMER30 DNA MER1_type -36 166 63 4 1498 648 270 87 27 chr9 119713886 119713941 -4362231 - B3A SINE B2 -4 194 142 4 1498 387 0 0 0 chr9 119713941 119713984 -4362188 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1498 648 270 87 27 chr9 119713984 119714111 -4362061 - B3A SINE B2 -57 141 2 4 1498 258 250 0 48 chr9 119714233 119714296 -4361876 + Charlie12 DNA MER1_type 2811 2870 -3 4 1498 600 14 0 0 chr9 119714444 119714513 -4361659 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 1498 828 184 0 45 chr9 119715354 119715508 -4360664 - B1_Mus1 SINE Alu -1 147 1 4 1498 264 216 12 129 chr9 119715541 119715626 -4360546 + MT2B2 LTR ERVL 157 231 -353 4 1498 405 194 120 22 chr9 119715552 119715656 -4360516 + PB1D10 SINE Alu 1 99 -50 4 1498 338 287 105 30 chr9 119715656 119715684 -4360488 + ID_B1 SINE B4 82 223 -1 4 1498 931 185 49 5 chr9 119715703 119715888 -4360284 + B3 SINE B2 24 216 0 4 1498 441 0 0 0 chr9 119716702 119716751 -4359421 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1498 282 254 14 43 chr9 119717654 119717724 -4358448 - MER63B DNA AcHobo -4 432 365 4 1498 569 296 105 31 chr9 119717809 119718199 -4357973 + L1M2 LINE L1 4638 5056 -1087 4 1498 306 333 10 10 chr9 119718825 119718922 -4357250 + L1M4 LINE L1 5346 5442 -742 4 1498 552 182 0 39 chr9 119719003 119719157 -4357015 + GA-rich Low_complexity Low_complexity 1 148 0 4 1498 263 321 22 30 chr9 119719280 119719415 -4356757 + L1M2 LINE L1 5565 5698 -593 4 1498 424 254 7 21 chr9 119719418 119719543 -4356629 - B3 SINE B2 -69 129 4 4 1498 1392 66 0 0 chr9 119719548 119720176 -4355996 + (CCA)n Simple_repeat Simple_repeat 1 628 0 4 1498 1008 281 15 23 chr9 119720394 119720653 -4355519 - B4A SINE B4 -21 271 15 4 1498 777 261 42 59 chr9 119720964 119721253 -4354919 + B4 SINE B4 1 284 -8 4 1498 678 260 42 63 chr9 119721278 119721516 -4354656 + B4A SINE B4 2 234 -58 4 1498 450 0 0 0 chr9 119721577 119721627 -4354545 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1498 479 272 28 35 chr9 119722372 119722511 -4353661 + ID_B1 SINE B4 8 145 -79 4 1498 527 254 0 0 chr9 119722511 119722621 -4353551 + B3 SINE B2 1 110 -106 4 1498 329 319 34 0 chr9 119722730 119722831 -4353341 - PB1D10 SINE Alu -4 113 9 4 1498 21 0 0 0 chr9 119722833 119722854 -4353318 + AT_rich Low_complexity Low_complexity 1 21 0 4 1498 642 278 10 67 chr9 119722856 119723064 -4353108 - B3A SINE B2 0 198 3 4 1498 331 327 9 0 chr9 119723093 119723203 -4352969 - PB1D10 SINE Alu -6 111 1 4 1498 1169 68 0 0 chr9 119723627 119723773 -4352399 + B1_Mus2 SINE Alu 2 147 0 4 1498 21 36 0 0 chr9 119723898 119723926 -4352246 + AT_rich Low_complexity Low_complexity 1 28 0 4 1498 706 250 71 14 chr9 119724055 119724266 -4351906 - ID_B1 SINE B4 -1 223 1 4 1498 800 249 15 19 chr9 119724661 119724866 -4351306 + ID_B1 SINE B4 3 206 -18 4 1498 260 281 48 12 chr9 119724876 119724959 -4351213 + LTR16A1 LTR ERVL 262 347 -109 4 1498 972 248 29 12 chr9 119725343 119725580 -4350592 + ID_B1 SINE B4 20 257 -35 4 1498 775 244 0 18 chr9 119726256 119726423 -4349749 + RSINE1 SINE B4 2 165 0 4 1498 234 229 0 114 chr9 119727171 119727250 -4348922 + LTR48B LTR ERV1 307 376 -268 4 1498 216 0 0 0 chr9 119727317 119727341 -4348831 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1498 1088 195 15 20 chr9 119727752 119727956 -4348216 + B3 SINE B2 10 212 -4 4 1498 592 256 44 13 chr9 119727985 119728143 -4348029 + RSINE1 SINE B4 3 165 0 4 1498 180 0 0 0 chr9 119728145 119728165 -4348007 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1498 256 192 74 0 chr9 119729402 119729463 -4346709 - B3A SINE B2 -130 65 1 4 1498 294 50 0 0 chr9 119729576 119729616 -4346556 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1498 581 291 21 0 chr9 119729853 119729994 -4346178 + RSINE1 SINE B4 2 145 -20 4 1498 1009 203 56 0 chr9 119730146 119730343 -4345829 + B3 SINE B2 1 208 -8 4 1498 242 301 99 13 chr9 119730505 119730808 -4345364 + L1M2 LINE L1 1753 2081 -4768 4 1498 641 159 26 9 chr9 119730808 119730922 -4345250 + ID_B1 SINE B4 109 224 0 4 1498 452 324 68 0 chr9 119731147 119731369 -4344803 + L1M2 LINE L1 5797 6033 -812 4 1498 241 299 0 0 chr9 119731404 119731471 -4344701 + L1_Mm LINE L1 5355 5421 -462 4 1498 248 303 15 0 chr9 119731473 119731539 -4344633 + ID4_ SINE ID 3 69 -14 4 1498 330 123 24 47 chr9 119731551 119731636 -4344536 + GA-rich Low_complexity Low_complexity 1 83 0 4 1498 239 374 46 6 chr9 119732870 119733045 -4343127 + LTR33 LTR ERVL 317 498 -17 4 1498 194 358 36 9 chr9 119733637 119733759 -4342413 - MIRm SINE MIR -128 148 14 4 1498 498 17 0 0 chr9 119735106 119735165 -4341007 + (TTG)n Simple_repeat Simple_repeat 2 60 0 4 1498 530 266 28 6 chr9 119735199 119735377 -4340795 + Lx8 LINE L1 6814 6995 -478 4 1498 1164 209 88 0 chr9 119735393 119735666 -4340506 + Lx8 LINE L1 7048 7344 -129 4 1498 537 170 21 21 chr9 119735673 119735769 -4340403 + B1_Mur3 SINE Alu 52 147 -2 4 1498 723 219 0 0 chr9 119736238 119736416 -4339756 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1498 778 256 28 42 chr9 119736421 119736633 -4339539 - B4 SINE B4 0 292 84 4 1498 640 154 55 0 chr9 119736664 119736774 -4339398 - PB1D9 SINE Alu -2 118 3 4 1498 721 207 45 45 chr9 119736787 119736964 -4339208 - B3A SINE B2 -19 179 3 4 1498 1281 14 0 0 chr9 119737023 119737163 -4339009 + B1_Mm SINE Alu 1 140 -7 4 1498 1579 254 45 3 chr9 119737928 119738287 -4337885 + MTE2b LTR MaLR 6 379 0 4 1498 230 349 68 23 chr9 119738388 119738520 -4337652 - LTR16E1 LTR ERVL -9 559 422 5 1498 251 279 36 48 chr9 119738566 119738638 -4337534 - LTR16E1 LTR ERVL -222 316 246 5 1498 888 324 42 12 chr9 119738638 119738969 -4337203 + MLT1F LTR MaLR 3 343 -205 5 1498 739 244 28 28 chr9 119739042 119739210 -4336962 + B4A SINE B4 54 221 -71 5 1498 351 173 148 0 chr9 119739210 119739291 -4336881 + B3A SINE B2 1 93 -105 5 1498 274 284 12 0 chr9 119739374 119739455 -4336717 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1498 333 167 291 6 chr9 119739458 119739556 -4336616 - B4A SINE B4 -78 214 92 5 1498 2227 100 21 62 chr9 119739558 119739898 -4336274 - ORR1A3 LTR MaLR 0 326 1 5 1498 351 150 0 0 chr9 119739899 119739959 -4336213 + (TTG)n Simple_repeat Simple_repeat 1 60 0 5 1498 372 43 0 0 chr9 119740026 119740072 -4336100 + (TTA)n Simple_repeat Simple_repeat 3 48 0 5 1498 443 178 0 14 chr9 119740072 119740146 -4336026 - B4A SINE B4 -213 79 7 5 1498 507 270 44 0 chr9 119740645 119740782 -4335390 + B4A SINE B4 130 272 -20 5 1498 562 253 43 12 chr9 119741371 119741535 -4334637 + Lx8 LINE L1 7190 7358 -115 5 1498 237 258 100 82 chr9 119741808 119741918 -4334254 - PB1D10 SINE Alu -1 116 5 5 1498 491 291 8 33 chr9 119741876 119741997 -4334175 - ID_B1 SINE B4 -101 123 6 5 1498 1056 83 0 0 chr9 119742039 119742196 -4333976 + (TG)n Simple_repeat Simple_repeat 2 158 0 5 1498 549 261 145 0 chr9 119742198 119742336 -4333836 - RSINE1 SINE B4 -6 159 2 5 1498 316 329 0 0 chr9 119742367 119742449 -4333723 + ID_B1 SINE B4 81 162 -62 5 1498 315 324 83 0 chr9 119742368 119742476 -4333696 + PB1D10 SINE Alu 1 117 0 5 1498 504 248 155 25 chr9 119742491 119742652 -4333520 + B3A SINE B2 1 182 -16 5 1498 245 301 35 104 chr9 119742961 119743076 -4333096 + MT2B LTR ERVL 152 258 -343 5 1498 710 229 21 0 chr9 119742977 119743117 -4333055 + ID_B1 SINE B4 82 224 0 5 1498 315 0 0 0 chr9 119743641 119743676 -4332496 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1498 846 241 117 87 chr9 119743740 119744108 -4332064 - MTE2b LTR MaLR 0 379 1 5 1498 360 174 11 21 chr9 119744200 119744294 -4331878 + C-rich Low_complexity Low_complexity 3 95 0 5 1498 211 266 84 48 chr9 119744451 119744534 -4331638 + L2c LINE L2 3282 3367 -20 5 1498 607 231 38 8 chr9 119744540 119744671 -4331501 + ID_B1 SINE B4 1 135 -89 5 1498 408 40 0 0 chr9 119744671 119744721 -4331451 + (GAAA)n Simple_repeat Simple_repeat 1 50 0 5 1498 715 274 94 4 chr9 119745258 119745493 -4330679 + B4 SINE B4 2 257 -35 5 1498 407 202 76 0 chr9 119745503 119745582 -4330590 - MTE2a LTR MaLR -76 303 219 5 1498 548 280 98 37 chr9 119745581 119745796 -4330376 + B4A SINE B4 57 284 -8 5 1498 250 292 13 53 chr9 119745841 119745917 -4330255 + B4 SINE B4 215 287 -5 5 1498 519 259 42 4 chr9 119746005 119746155 -4330017 - B3A SINE B2 -43 173 7 5 1498 833 200 58 12 chr9 119746191 119746363 -4329809 - B3A SINE B2 -18 180 1 5 1498 506 205 6 31 chr9 119746403 119746564 -4329608 + GA-rich Low_complexity Low_complexity 3 159 0 5 1498 797 272 45 119 chr9 119747391 119747795 -4328377 - MTE2a LTR MaLR -2 377 4 5 1498 659 192 8 16 chr9 119748143 119748270 -4327902 + MTE2a LTR MaLR 254 379 0 5 1498 318 268 14 100 chr9 119748284 119748407 -4327765 + L1MEg LINE L1 965 1091 -5028 5 1498 186 43 0 0 chr9 119748439 119748462 -4327710 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1498 655 235 37 50 chr9 119748467 119748628 -4327544 - B3A SINE B2 -38 160 2 5 1498 432 338 58 60 chr9 119748675 119749417 -4326755 + L1MEg LINE L1 1166 1932 -4217 5 1498 513 327 57 28 chr9 119749612 119749823 -4326349 + B4A SINE B4 68 284 -8 5 1498 324 0 0 0 chr9 119749837 119749873 -4326299 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1498 460 239 108 25 chr9 119749899 119750019 -4326153 + ID_B1 SINE B4 79 208 -16 5 1498 627 39 0 0 chr9 119750021 119750099 -4326073 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1498 237 316 57 45 chr9 119750133 119750309 -4325863 + L1MB2 LINE L1 5955 6132 -39 5 1498 962 262 54 8 chr9 119750322 119750580 -4325592 + MTEa LTR MaLR 26 295 -84 5 1498 693 227 153 38 chr9 119750668 119750851 -4325321 + B3 SINE B2 13 216 0 5 1498 468 0 0 0 chr9 119751958 119752010 -4324162 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1498 1078 153 0 27 chr9 119752010 119752190 -4323982 - B2_Mm2 SINE B2 -18 177 2 5 1498 1191 212 45 34 chr9 119752222 119752491 -4323681 + B4A SINE B4 4 275 -17 5 1498 470 244 25 34 chr9 119752543 119752662 -4323510 - B3A SINE B2 -80 118 1 5 1498 413 158 0 62 chr9 119753506 119753587 -4322585 + B3A SINE B2 1 76 -122 5 1498 402 39 0 0 chr9 119753633 119753685 -4322487 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1498 441 36 0 0 chr9 119753685 119753740 -4322432 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1498 324 0 0 0 chr9 119754499 119754535 -4321637 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 1498 213 108 0 0 chr9 119754535 119754571 -4321601 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1498 330 207 104 35 chr9 119755111 119755226 -4320946 + MIRc SINE MIR 24 146 -122 5 1498 695 189 76 0 chr9 119755226 119755358 -4320814 - ID_B1 SINE B4 0 224 83 5 1498 180 0 0 0 chr9 119755748 119755768 -4320404 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 5 1498 439 304 21 28 chr9 119756530 119756672 -4319500 - MER45A DNA Tip100 -25 153 13 5 1498 399 230 0 0 chr9 119756684 119756797 -4319375 + (CA)n Simple_repeat Simple_repeat 1 113 0 5 1498 319 352 0 18 chr9 119757304 119757414 -4318758 - MIRc SINE MIR -123 145 38 5 1498 424 243 220 23 chr9 119757503 119757680 -4318492 + ID_B1 SINE B4 1 212 -12 5 1498 236 389 99 26 chr9 119757917 119758149 -4318023 + MLT1G3 LTR MaLR 290 538 -57 5 1498 279 0 0 0 chr9 119758512 119758543 -4317629 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1498 225 0 0 0 chr9 119759357 119759382 -4316790 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1498 588 291 25 25 chr9 119759555 119759717 -4316455 - RSINE1 SINE B4 -1 164 3 5 1498 562 164 52 3 chr9 119759809 119760140 -4316032 + (TG)n Simple_repeat Simple_repeat 1 347 0 5 1498 440 205 112 35 chr9 119760325 119760441 -4315731 - ID_B1 SINE B4 0 224 100 5 1498 306 73 0 0 chr9 119760446 119760487 -4315685 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1498 557 246 75 56 chr9 119761310 119761494 -4314678 + B3A SINE B2 2 216 0 5 1498 495 236 38 69 chr9 119761558 119761717 -4314455 - B3 SINE B2 0 216 63 5 1498 27 0 0 0 chr9 119762570 119762597 -4313575 + AT_rich Low_complexity Low_complexity 1 27 0 5 1498 661 286 126 5 chr9 119762600 119762790 -4313382 - ID_B1 SINE B4 -10 214 2 5 1498 533 316 28 37 chr9 119762800 119763017 -4313155 - B3 SINE B2 0 216 2 5 1498 322 325 60 53 chr9 119763041 119763174 -4312998 + B4 SINE B4 65 198 -94 5 1498 357 277 31 70 chr9 119763061 119763189 -4312983 + MT2B LTR ERVL 157 279 -322 5 1498 641 241 0 22 chr9 119763081 119763217 -4312955 + B1_Mm SINE Alu 15 147 0 5 1498 3016 155 23 18 chr9 119763873 119764432 -4311740 - RLTR19-int LTR ERVK -1751 4386 3825 5 1498 2632 167 28 44 chr9 119764432 119765003 -4311169 - RLTR19-int LTR ERVK -3356 2781 2220 5 1498 301 238 142 68 chr9 119765145 119765307 -4310865 - MTC-int LTR MaLR -163 1095 922 5 1498 2139 162 10 24 chr9 119765308 119765617 -4310555 - RLTR19-int LTR ERVK -4898 1239 935 5 1498 1518 43 0 21 chr9 119765617 119765806 -4310366 - B2_Mm2 SINE B2 -9 186 2 5 1498 2139 162 5 55 chr9 119765806 119765948 -4310224 - RLTR19-int LTR ERVK -5203 934 748 5 1498 1677 188 78 85 chr9 119766010 119766412 -4309760 - RLTR19-int LTR ERVK -5528 609 203 5 1498 4888 128 138 63 chr9 119766412 119767364 -4308808 - RLTR13D2 LTR ERVK 0 1023 1 5 1498 1677 188 78 85 chr9 119767364 119767408 -4308764 - RLTR19-int LTR ERVK -5935 202 166 5 1498 311 167 100 25 chr9 119768197 119768277 -4307895 + PB1D10 SINE Alu 32 117 0 5 1498 942 230 20 20 chr9 119768281 119768485 -4307687 + B3 SINE B2 1 204 -12 5 1498 817 222 12 36 chr9 119768486 119768654 -4307518 + RSINE1 SINE B4 1 164 -1 5 1498 333 231 84 11 chr9 119768683 119768825 -4307347 + L1M4 LINE L1 5328 5472 -972 5 1498 2201 172 49 22 chr9 119768831 119769241 -4306931 + MTC LTR MaLR 1 421 0 5 1498 4826 177 109 19 chr9 119769241 119770285 -4305887 + MTC-int LTR MaLR 3 1140 -118 5 1498 2144 102 3 70 chr9 119770330 119770689 -4305483 + IAPLTR1a_Mm LTR ERVK 1 335 -2 5 1498 6620 9 20 0 chr9 119770689 119771468 -4304704 + IAPEz-int LTR ERVK 9 803 -5678 5 1498 2007 159 8 14 chr9 119771468 119771837 -4304335 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1498 55693 12 4 16 chr9 119771837 119778391 -4297781 - IAPEz-int LTR ERVK 0 6481 9 5 1498 2002 151 22 27 chr9 119778391 119778758 -4297414 - IAPLTR1_Mm LTR ERVK -2 365 1 5 1498 52000 11 2 8 chr9 119778758 119784471 -4291701 + IAPEz-int LTR ERVK 801 6481 0 5 1498 2130 89 3 71 chr9 119784471 119784821 -4291351 + IAPLTR1a_Mm LTR ERVK 1 326 -11 5 1498 230 172 0 33 chr9 119784834 119784894 -4291278 - Lx4B LINE L1 -47 7011 6954 5 1498 914 174 84 0 chr9 119784890 119785045 -4291127 - Lx5 LINE L1 -213 6837 6670 5 1498 1034 166 180 0 chr9 119785106 119785323 -4290849 + Lx4B LINE L1 6798 7053 -5 5 1498 273 148 82 0 chr9 119785327 119785388 -4290784 + MTC-int LTR MaLR 1193 1258 0 5 1498 189 0 0 0 chr9 119786153 119786174 -4289998 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1498 246 328 15 15 chr9 119786201 119786269 -4289903 + ORR1D2 LTR MaLR 56 123 -247 5 1498 320 345 45 35 chr9 119786378 119786411 -4289761 - MurSatRep1 Unknown Unknown -88 2049 1945 5 1498 543 267 14 0 chr9 119786411 119786624 -4289548 - MMSAT4 Satellite Satellite -5 216 1 5 1498 320 345 45 35 chr9 119786624 119786683 -4289489 - MurSatRep1 Unknown Unknown -88 1944 1747 5 1498 320 231 0 0 chr9 119786715 119786780 -4289392 - MurSatRep1 Unknown Unknown -1128 1009 945 5 1498 1869 160 88 6 chr9 119786884 119787235 -4288937 + MTC LTR MaLR 8 387 -34 5 1498 2562 162 44 26 chr9 119787235 119787737 -4288435 + RLTR19-int LTR ERVK 729 1239 -4898 5 1498 277 284 168 45 chr9 119787738 119787893 -4288279 + MTC-int LTR MaLR 922 1095 -163 5 1498 10201 164 39 58 chr9 119788019 119790228 -4285944 + RLTR19-int LTR ERVK 2220 4386 -1751 5 1498 249 318 0 15 chr9 119790865 119790932 -4285240 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 5 1498 409 248 148 71 chr9 119791005 119791174 -4284998 + B3A SINE B2 1 182 -16 6 1498 226 282 41 27 chr9 119792329 119792402 -4283770 - LTR16A1 LTR ERVL -139 317 244 6 1498 497 209 177 12 chr9 119792567 119792741 -4283431 + B3 SINE B2 2 195 0 6 1498 366 307 21 35 chr9 119792931 119793073 -4283099 + MLT1A0 LTR MaLR 7 146 -219 6 1498 789 261 15 39 chr9 119793087 119793290 -4282882 + B3A SINE B2 1 198 0 6 1498 656 296 127 51 chr9 119793466 119793758 -4282414 - MTEa LTR MaLR 0 379 66 6 1498 487 87 0 0 chr9 119793762 119793831 -4282341 + B1_Mur4 SINE Alu 1 69 -81 6 1498 270 241 122 45 chr9 119793889 119794021 -4282151 + MLT1A0 LTR MaLR 257 362 -12 6 1498 808 135 0 38 chr9 119794041 119794172 -4282000 - B2_Mm2 SINE B2 -67 128 3 6 1498 198 0 0 0 chr9 119794175 119794197 -4281975 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 6 1498 274 260 110 0 chr9 119794340 119794413 -4281759 + B4 SINE B4 201 281 -11 6 1498 482 268 50 25 chr9 119794805 119794966 -4281206 - B3A SINE B2 -33 165 1 6 1498 379 101 25 0 chr9 119794995 119795074 -4281098 + (CCCCCA)n Simple_repeat Simple_repeat 4 84 0 6 1498 270 235 102 0 chr9 119795202 119795300 -4280872 - L1MEc LINE L1 -5469 931 824 6 1498 411 137 40 14 chr9 119795455 119795529 -4280643 - ID_B1 SINE B4 -3 221 146 6 1498 360 272 97 0 chr9 119795965 119796068 -4280104 - ID_B1 SINE B4 -26 198 86 6 1498 270 0 0 0 chr9 119796078 119796108 -4280064 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1498 221 196 87 0 chr9 119796109 119796155 -4280017 - RSINE1 SINE B4 -45 120 71 6 1498 480 279 27 0 chr9 119796188 119796299 -4279873 - RSINE1 SINE B4 -40 125 12 6 1498 302 226 100 70 chr9 119796314 119796330 -4279842 - B3A SINE B2 -90 108 6 6 1498 480 146 24 24 chr9 119796330 119796414 -4279758 - B4 SINE B4 -203 89 6 6 1498 1877 166 51 125 chr9 119796517 119796965 -4279207 - MTC LTR MaLR -6 415 1 6 1498 462 261 21 63 chr9 119797079 119797222 -4278950 + MTE2b LTR MaLR 208 344 -35 6 1498 527 181 92 23 chr9 119797234 119797364 -4278808 - B1_Mur3 SINE Alu -8 141 3 6 1498 369 335 65 73 chr9 119797675 119797923 -4278249 - L1M5 LINE L1 -619 5505 5260 6 1498 392 313 42 81 chr9 119798363 119798599 -4277573 + MamGypLTR1a LTR Gypsy 1 227 -557 6 1498 553 259 99 0 chr9 119799037 119799168 -4277004 - RSINE1 SINE B4 -19 146 3 6 1498 569 319 123 30 chr9 119799381 119799578 -4276594 - MER2 DNA MER2_type -1 344 136 6 1498 949 137 7 14 chr9 119799578 119799726 -4276446 + B1_Mus1 SINE Alu 2 148 0 6 187 569 319 123 30 chr9 119799726 119799829 -4276343 - MER2 DNA MER2_type -210 135 18 6 1499 624 220 17 0 chr9 119800305 119800423 -4275749 + B3A SINE B2 3 122 -76 6 1499 2285 127 18 0 chr9 119800429 119800769 -4275403 + ORR1C1 LTR MaLR 1 346 -32 6 1499 976 89 12 99 chr9 119801012 119801174 -4274998 - B1_Mur4 SINE Alu -1 149 2 6 1499 234 0 0 0 chr9 119801333 119801359 -4274813 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1499 270 228 0 0 chr9 119801388 119801445 -4274727 - ORR1D2 LTR MaLR -59 311 255 6 1499 436 232 78 35 chr9 119801449 119801565 -4274607 - ORR1D2 LTR MaLR -249 121 1 6 1499 838 209 165 0 chr9 119801580 119801762 -4274410 - B3 SINE B2 -4 212 1 6 1499 2447 257 134 60 chr9 119802251 119803141 -4273031 - Lx8 LINE L1 -354 7119 6164 6 1499 462 219 142 8 chr9 119803157 119803277 -4272895 - B3 SINE B2 -80 136 1 6 1499 530 208 113 0 chr9 119803485 119803591 -4272581 + RSINE1 SINE B4 2 119 -46 6 1499 272 194 2 0 chr9 119803592 119803651 -4272521 + PB1D9 SINE Alu 61 120 0 6 1499 24 0 0 0 chr9 119803661 119803685 -4272487 + AT_rich Low_complexity Low_complexity 1 24 0 6 1499 23 68 0 0 chr9 119804185 119804229 -4271943 + GC_rich Low_complexity Low_complexity 1 44 0 6 1499 643 231 34 106 chr9 119804720 119804957 -4271215 + ID_B1 SINE B4 4 223 -1 6 1499 609 268 56 91 chr9 119805206 119805493 -4270679 + B4A SINE B4 2 278 -14 6 1499 575 216 35 0 chr9 119805819 119805935 -4270237 + RSINE1 SINE B4 3 122 -43 6 1499 418 320 93 7 chr9 119806488 119806639 -4269533 - MER20 DNA MER1_type -54 165 2 6 1499 452 229 27 45 chr9 119806785 119806895 -4269277 + PB1D9 SINE Alu 8 115 -5 6 1499 395 231 11 11 chr9 119806921 119807013 -4269159 - B1_Mur3 SINE Alu -56 93 2 6 1499 362 300 217 5 chr9 119807032 119807302 -4268870 - L2a LINE L2 -263 3163 2837 6 1499 311 299 24 57 chr9 119807581 119807705 -4268467 - RSINE1 SINE B4 -35 130 11 6 1499 279 284 83 0 chr9 119807749 119807858 -4268314 - PB1D9 SINE Alu 0 120 3 6 1499 1025 142 6 30 chr9 119807995 119808162 -4268010 + B2_Mm2 SINE B2 2 164 -31 6 1499 414 345 62 5 chr9 119808183 119808393 -4267779 + MLT1E2 LTR MaLR 310 531 -96 6 1499 741 231 63 21 chr9 119808974 119809164 -4267008 + B3A SINE B2 1 198 0 6 1499 576 261 44 22 chr9 119809607 119809744 -4266428 - RSINE1 SINE B4 -22 143 4 6 1499 1470 56 17 0 chr9 119809788 119809966 -4266206 + B2_Mm2 SINE B2 1 181 -14 6 1499 247 281 0 30 chr9 119810037 119810103 -4266069 + ID_B1 SINE B4 137 200 -24 6 1499 1233 48 0 0 chr9 119810143 119810290 -4265882 + B1_Mus1 SINE Alu 1 147 -1 6 1499 218 241 35 0 chr9 119810658 119810716 -4265456 - BC1_Mm scRNA scRNA -60 92 33 6 1499 228 206 94 16 chr9 119810747 119810811 -4265361 + HAL1 LINE L1 1611 1679 -828 6 1499 333 0 0 0 chr9 119812173 119812210 -4263962 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 6 1499 647 321 55 9 chr9 119813561 119813781 -4262391 - B4A SINE B4 0 292 63 6 1499 298 276 137 52 chr9 119816386 119816411 -4259761 + ID_B1 SINE B4 59 221 0 6 1499 528 215 48 32 chr9 119816411 119816536 -4259636 + PB1 SINE Alu 1 127 0 6 1499 479 222 83 45 chr9 119817024 119817156 -4259016 + B3A SINE B2 14 150 -48 6 1499 1132 136 170 14 chr9 119817147 119817370 -4258802 - ORR1B1 LTR MaLR -136 258 1 6 1499 247 292 111 0 chr9 119818174 119818246 -4257926 - MER5A DNA MER1_type -94 95 16 6 1499 1042 53 8 0 chr9 119818985 119819117 -4257055 + B1_Mus2 SINE Alu 15 147 0 6 1499 359 235 0 69 chr9 119820525 119820612 -4255560 + PB1D10 SINE Alu 37 117 0 6 1499 1268 225 151 0 chr9 119820906 119821231 -4254941 - ORR1D1 LTR MaLR 0 374 1 6 1499 428 264 168 12 chr9 119821815 119821976 -4254196 - Lx8 LINE L1 -44 7429 7244 6 1499 21 0 0 0 chr9 119821995 119822016 -4254156 + AT_rich Low_complexity Low_complexity 1 21 0 6 1499 559 47 47 0 chr9 119822619 119822705 -4253467 - L1Md_F3 LINE L1 0 6584 6495 6 1499 797 231 91 20 chr9 119825011 119825210 -4250962 - B3 SINE B2 -1 215 3 6 1499 910 226 35 5 chr9 119825462 119825662 -4250510 - B3 SINE B2 -4 212 7 6 1499 252 0 0 0 chr9 119826402 119826430 -4249742 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1499 928 104 0 82 chr9 119826433 119826580 -4249592 - B1_Mus1 SINE Alu -9 139 5 6 1499 510 254 9 17 chr9 119826728 119826844 -4249328 + PB1D7 SINE Alu 1 115 -5 6 1499 1723 153 140 34 chr9 119826920 119827271 -4248901 - ORR1B1 LTR MaLR -6 388 1 6 1499 213 286 118 21 chr9 119827281 119827374 -4248798 + PB1D10 SINE Alu 3 104 -13 6 1499 27 29 0 0 chr9 119828246 119828280 -4247892 + AT_rich Low_complexity Low_complexity 1 34 0 6 1499 222 257 28 14 chr9 119828349 119828420 -4247752 - B2_Mm2 SINE B2 -123 72 1 6 1499 923 204 30 20 chr9 119828467 119828667 -4247505 - B3 SINE B2 -14 202 1 6 1499 675 0 0 0 chr9 119829027 119829102 -4247070 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 1499 257 204 0 0 chr9 119829155 119829204 -4246968 - HERVL40-int LTR ERVL -61 5469 5421 6 1499 784 246 158 19 chr9 119830147 119830520 -4245652 - L1MC4a LINE L1 -1980 5902 5478 6 1499 427 154 193 46 chr9 119831954 119832063 -4244109 + B1_Mur1 SINE Alu 10 134 -15 6 1499 297 250 17 0 chr9 119832063 119832123 -4244049 + B1F2 SINE Alu 1 61 -88 6 1499 701 194 22 0 chr9 119839636 119839770 -4236402 - B3 SINE B2 -4 212 76 6 1499 369 223 229 8 chr9 119840401 119840523 -4235649 - RSINE1 SINE B4 -6 159 11 6 1499 423 38 0 0 chr9 119840580 119840633 -4235539 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1499 448 254 90 23 chr9 119840647 119840824 -4235348 - B4 SINE B4 -8 284 96 6 1499 249 189 19 19 chr9 119841184 119841238 -4234934 - B4A SINE B4 -200 92 39 6 1499 553 204 0 0 chr9 119841285 119841383 -4234789 - B1_Mur1 SINE Alu -5 144 47 6 1499 395 264 17 60 chr9 119841432 119841549 -4234623 + PB1D9 SINE Alu 7 118 -2 6 1499 868 153 59 54 chr9 119843477 119843612 -4232560 - URR1B DNA MER1_type -3 222 81 6 1499 2580 158 35 18 chr9 119843612 119844063 -4232109 + RMER6B LTR ERVK 1 459 -2 6 1499 868 153 59 54 chr9 119844063 119844113 -4232059 - URR1B DNA MER1_type -145 80 36 6 1499 378 0 0 0 chr9 119844160 119844202 -4231970 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1499 501 191 47 101 chr9 119844245 119844414 -4231758 + B2_Mm2 SINE B2 36 195 0 6 1499 21 36 0 0 chr9 119844429 119844457 -4231715 + AT_rich Low_complexity Low_complexity 1 28 0 6 1499 616 146 197 31 chr9 119844517 119844644 -4231528 + B1_Mus1 SINE Alu 1 148 0 6 1499 355 274 53 0 chr9 119844685 119844780 -4231392 - B3A SINE B2 -22 176 77 6 1499 405 278 18 18 chr9 119844894 119845004 -4231168 - PB1D10 SINE Alu -3 114 5 6 1499 187 377 14 0 chr9 119845061 119845130 -4231042 + L2a LINE L2 3340 3409 -17 7 1499 1224 48 0 20 chr9 119845214 119845363 -4230809 + B1_Mus1 SINE Alu 1 146 -2 7 1499 494 324 50 0 chr9 119845376 119845555 -4230617 + B3A SINE B2 1 188 -10 7 1499 512 183 0 41 chr9 119845870 119845967 -4230205 + B1_Mur1 SINE Alu 37 129 -20 7 1499 474 18 0 0 chr9 119845976 119846031 -4230141 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 7 1499 296 245 25 102 chr9 119847572 119847690 -4228482 + B1_Mur1 SINE Alu 4 112 -37 7 1499 187 267 129 41 chr9 119847836 119847943 -4228229 + MIR SINE MIR 31 147 -121 7 1499 198 227 141 39 chr9 119848607 119848685 -4227487 + MIRm SINE MIR 121 206 -70 7 1499 327 318 19 9 chr9 119848970 119849078 -4227094 + ID_B1 SINE B4 114 222 -2 7 1499 755 185 3 24 chr9 119849087 119849254 -4226918 + B3 SINE B2 1 157 -38 7 1499 244 0 0 53 chr9 119850205 119850243 -4225929 + (TCC)n Simple_repeat Simple_repeat 2 37 0 7 1499 445 138 38 0 chr9 119850475 119850555 -4225617 + B1_Mur3 SINE Alu 67 149 0 7 1499 449 259 81 58 chr9 119850757 119850929 -4225243 - ID_B1 SINE B4 -8 216 41 7 1499 286 270 0 13 chr9 119851012 119851087 -4225085 - B3 SINE B2 -113 103 30 7 1499 450 169 0 88 chr9 119851149 119851240 -4224932 + RSINE1 SINE B4 4 86 -79 7 1499 444 195 12 12 chr9 119852053 119852136 -4224036 - ID4_ SINE ID 0 83 1 7 1499 492 219 0 19 chr9 119852138 119852245 -4223927 - ID_B1 SINE B4 -8 216 112 7 1499 254 235 132 0 chr9 119853135 119853203 -4222969 - ID4 SINE ID -5 78 2 7 1499 1270 27 0 20 chr9 119853221 119853371 -4222801 + B1_Mus1 SINE Alu 1 147 -1 7 1499 853 206 194 0 chr9 119853389 119853569 -4222603 + B3 SINE B2 1 215 -1 7 1499 1011 65 7 0 chr9 119853599 119853737 -4222435 - B2_Mm1t SINE B2 -54 139 1 7 1499 1117 124 56 11 chr9 119853744 119853924 -4222248 - B2_Mm2 SINE B2 -7 188 1 7 1499 255 61 0 0 chr9 119854333 119854366 -4221806 + (CCCCAG)n Simple_repeat Simple_repeat 1 33 0 7 1499 485 226 114 61 chr9 119855296 119855428 -4220744 + ID_B1 SINE B4 84 222 -2 7 1499 645 14 0 0 chr9 119855505 119855579 -4220593 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 7 1499 210 71 0 0 chr9 119856247 119856275 -4219897 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1499 1172 88 0 0 chr9 119856435 119856582 -4219590 - B1_Mus2 SINE Alu 0 147 1 7 1499 1119 73 0 0 chr9 119856933 119857083 -4219089 + (TCTA)n Simple_repeat Simple_repeat 4 153 0 7 1499 416 282 64 0 chr9 119857085 119857195 -4218977 - ID_B1 SINE B4 -8 216 100 7 1499 526 257 92 33 chr9 119857240 119857393 -4218779 - RSINE1 SINE B4 -3 162 1 7 1499 720 168 0 0 chr9 119857418 119857537 -4218635 + B1_Mur2 SINE Alu 1 119 -30 7 1499 444 227 45 0 chr9 119857731 119857841 -4218331 + PB1D10 SINE Alu 1 115 -2 7 1499 425 196 43 11 chr9 119858437 119858530 -4217642 + ID_B1 SINE B4 128 223 -1 7 1499 1379 85 21 0 chr9 119858698 119858886 -4217286 + B2_Mm2 SINE B2 3 194 -1 7 1499 654 235 30 0 chr9 119858970 119859136 -4217036 - B3A SINE B2 -26 172 2 7 1499 573 253 43 31 chr9 119859207 119859370 -4216802 + RSINE1 SINE B4 1 165 0 7 1499 189 0 0 0 chr9 119859672 119859693 -4216479 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 7 1499 201 133 0 0 chr9 119860279 119860309 -4215863 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 7 1499 1001 82 90 0 chr9 119860324 119860458 -4215714 + B1_Mm SINE Alu 1 146 -1 7 1499 694 256 80 30 chr9 119860471 119860672 -4215500 - ID_B1 SINE B4 -13 211 1 7 1499 402 194 34 127 chr9 119860865 119860918 -4215254 + ID_B1 SINE B4 104 149 -75 7 1499 723 204 10 106 chr9 119860918 119861126 -4215046 + B2_Mm2 SINE B2 1 188 -7 7 1499 402 194 34 127 chr9 119861126 119861190 -4214982 + ID_B1 SINE B4 150 210 -14 7 1499 384 138 0 0 chr9 119861486 119861551 -4214621 + (CATA)n Simple_repeat Simple_repeat 4 68 0 7 1499 218 106 21 0 chr9 119862233 119862280 -4213892 + (TTTTTA)n Simple_repeat Simple_repeat 1 48 0 7 1499 957 102 66 0 chr9 119862281 119862418 -4213754 - B1_Mus1 SINE Alu -1 147 2 7 1499 262 278 0 14 chr9 119862515 119862588 -4213584 + B4 SINE B4 15 86 -206 7 1499 336 252 0 15 chr9 119862525 119862616 -4213556 + ID4_ SINE ID 23 109 -43 7 1499 227 175 0 17 chr9 119862655 119862713 -4213459 + T-rich Low_complexity Low_complexity 4 60 0 7 1499 420 116 64 9 chr9 119862734 119862842 -4213330 - B1_Mus2 SINE Alu 0 147 1 7 1499 635 227 192 5 chr9 119862869 119863072 -4213100 + B4 SINE B4 2 242 -50 7 1499 372 22 0 0 chr9 119863076 119863121 -4213051 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1499 368 218 0 0 chr9 119863880 119863958 -4212214 + B4A SINE B4 2 79 -213 7 1499 558 191 0 0 chr9 119864285 119864390 -4211782 - B1_Mur1 SINE Alu 0 149 45 7 1499 286 260 0 14 chr9 119864583 119864657 -4211515 + B4 SINE B4 1 73 -219 7 1499 288 146 83 0 chr9 119864676 119864724 -4211448 + B1_Mur1 SINE Alu 73 124 -25 7 1499 223 227 0 0 chr9 119864739 119864783 -4211389 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1499 231 143 63 0 chr9 119864816 119864879 -4211293 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 7 1499 858 236 22 76 chr9 119864918 119865143 -4211029 + B3 SINE B2 4 216 0 7 1499 773 173 88 22 chr9 119865164 119865300 -4210872 - B1_Mur4 SINE Alu -4 146 2 7 1499 22 0 0 0 chr9 119865315 119865337 -4210835 + AT_rich Low_complexity Low_complexity 1 22 0 7 1499 599 300 13 0 chr9 119865443 119865593 -4210579 - RSINE1 SINE B4 -12 153 2 7 1499 418 264 35 0 chr9 119865613 119865721 -4210451 - B1F1 SINE Alu -1 116 3 7 1499 275 321 0 12 chr9 119865662 119865744 -4210428 - B4A SINE B4 -146 146 66 7 1499 248 231 19 0 chr9 119866845 119866897 -4209275 + ID SINE ID 5 57 -167 7 1499 314 204 89 22 chr9 119868451 119868541 -4207631 - ID_B1 SINE B4 -21 203 108 7 1499 186 71 0 0 chr9 119868543 119868571 -4207601 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1499 433 285 13 77 chr9 119868582 119868738 -4207434 - B1_Mur1 SINE Alu -3 146 1 7 1499 851 171 78 22 chr9 119868745 119868924 -4207248 - B2_Mm2 SINE B2 -5 190 2 7 1499 361 192 0 40 chr9 119868937 119869013 -4207159 - B1F SINE Alu -6 143 71 7 1499 295 229 34 67 chr9 119869013 119869026 -4207146 - ID_B1 SINE B4 -6 218 133 7 1499 566 285 52 82 chr9 119869089 119869362 -4206810 + MER47B DNA MER2_type 13 279 -139 7 1499 887 260 5 15 chr9 119869362 119869557 -4206615 - B3A SINE B2 -4 194 2 7 1499 487 312 52 78 chr9 119869557 119869569 -4206603 + MER47B DNA MER2_type 280 290 -128 7 1499 993 155 242 6 chr9 119869569 119869751 -4206421 + URR1B DNA MER1_type 1 225 0 7 1499 487 312 52 78 chr9 119869751 119869770 -4206402 + MER47B DNA MER2_type 291 309 -109 7 1499 372 207 16 7 chr9 119869753 119869842 -4206330 - B1_Mus1 SINE Alu -30 90 3 7 1499 301 227 339 0 chr9 119870292 119870410 -4205762 + ID_B1 SINE B4 34 191 -33 7 1499 642 167 152 45 chr9 119870436 119870568 -4205604 + B1_Mur1 SINE Alu 1 146 -3 7 1499 232 176 0 19 chr9 119870582 119870634 -4205538 + A-rich Low_complexity Low_complexity 2 52 0 7 1499 586 274 31 19 chr9 119871089 119871249 -4204923 + ID_B1 SINE B4 2 163 -61 7 1499 633 195 235 12 chr9 119871609 119871775 -4204397 + ID_B1 SINE B4 15 217 -7 7 1499 293 44 44 0 chr9 119872802 119872847 -4203325 - MTB_Mm LTR MaLR -360 47 1 7 1499 2226 88 85 6 chr9 119872847 119873211 -4202961 - MTB_Mm-int LTR MaLR 0 1098 706 7 1499 366 276 58 40 chr9 119873844 119873999 -4202173 + MIR SINE MIR 31 180 -88 7 1499 378 0 0 0 chr9 119874052 119874094 -4202078 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1499 231 88 0 0 chr9 119874094 119874128 -4202044 + (GA)n Simple_repeat Simple_repeat 2 35 0 7 1499 1487 57 15 15 chr9 119874209 119874404 -4201768 + B2_Mm2 SINE B2 1 195 0 7 1499 576 310 47 70 chr9 119874405 119874620 -4201552 - B4A SINE B4 -82 210 1 7 1499 830 223 104 0 chr9 119877739 119877941 -4198231 + ID_B1 SINE B4 2 224 0 7 1499 430 299 6 58 chr9 119878205 119878361 -4197811 + B1F1 SINE Alu 1 148 -1 7 1499 602 282 0 7 chr9 119878363 119878513 -4197659 + RSINE1 SINE B4 8 156 -9 7 1499 232 111 37 0 chr9 119878726 119878780 -4197392 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1499 275 262 148 45 chr9 119878794 119878882 -4197290 + ID_B1 SINE B4 104 200 -24 7 1499 499 281 76 6 chr9 119883048 119883220 -4192952 - ID_B1 SINE B4 -38 186 3 7 1499 668 201 222 11 chr9 119883837 119884013 -4192159 + B3 SINE B2 2 214 -2 7 1499 1207 62 0 0 chr9 119884090 119884234 -4191938 - B1_Mus1 SINE Alu 0 148 5 7 1499 821 228 37 11 chr9 119884247 119884438 -4191734 - B3A SINE B2 -1 197 2 7 1499 605 233 85 0 chr9 119884442 119884571 -4191601 - B1_Mur2 SINE Alu 0 149 10 7 1499 603 169 134 16 chr9 119884943 119885130 -4191042 + Lx9 LINE L1 7436 7644 0 7 1499 1230 54 0 13 chr9 119885159 119885308 -4190864 + B1_Mus1 SINE Alu 2 148 0 7 1499 207 0 0 0 chr9 119885308 119885331 -4190841 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1499 1439 83 16 5 chr9 119885393 119885586 -4190586 + B2_Mm2 SINE B2 1 195 0 7 1499 243 304 126 10 chr9 119885612 119885715 -4190457 + PB1D9 SINE Alu 1 115 -5 7 1499 226 315 0 0 chr9 119886197 119886270 -4189902 + GA-rich Low_complexity Low_complexity 3 75 0 7 1499 257 220 17 0 chr9 119886649 119886708 -4189464 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1499 237 231 0 0 chr9 119886694 119886746 -4189426 + (CAGA)n Simple_repeat Simple_repeat 1 52 0 8 1499 214 250 0 0 chr9 119887864 119887916 -4188256 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1499 353 307 35 64 chr9 119888079 119888281 -4187891 + L2 LINE L2 2440 2635 -784 8 1499 203 321 74 0 chr9 119888323 119888404 -4187768 + MIR SINE MIR 43 129 -133 8 1499 333 181 53 53 chr9 119888427 119888503 -4187669 + ID_B1 SINE B4 92 167 -57 8 1499 331 232 67 48 chr9 119888503 119888531 -4187641 + PB1D10 SINE Alu 11 116 -1 8 1499 271 264 52 9 chr9 119889394 119889499 -4186673 + PB1D7 SINE Alu 1 114 -6 8 1499 243 0 0 0 chr9 119889592 119889619 -4186553 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1499 217 263 25 50 chr9 119889705 119889785 -4186387 - ID_B1 SINE B4 -56 168 91 8 1499 240 111 0 0 chr9 119890373 119890409 -4185763 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 8 1499 181 303 50 50 chr9 119891329 119891409 -4184763 - L2a LINE L2 0 3426 3347 8 1499 184 316 0 40 chr9 119893718 119893817 -4182355 + L2c LINE L2 3060 3154 -233 8 1499 660 263 33 38 chr9 119894196 119894280 -4181892 + ID_B1 SINE B4 11 222 -2 8 1499 705 124 101 0 chr9 119894280 119894409 -4181763 + B1_Mur3 SINE Alu 8 149 0 8 1499 766 126 158 0 chr9 119894414 119894541 -4181631 + B1_Mur2 SINE Alu 3 149 0 8 1499 238 108 0 0 chr9 119894761 119894798 -4181374 - ID_B1 SINE B4 -7 217 181 8 1499 1265 34 0 0 chr9 119894825 119894972 -4181200 - B1_Mm SINE Alu 0 147 1 8 1499 445 207 0 12 chr9 119894977 119895060 -4181112 - ID4 SINE ID 0 83 2 8 1499 839 188 8 0 chr9 119895782 119895915 -4180257 - B1_Mus1 SINE Alu -12 136 3 8 1499 230 372 69 19 chr9 119896492 119896651 -4179521 + MER5A DNA MER1_type 23 189 0 8 1499 268 336 26 35 chr9 119896716 119896830 -4179342 + PB1D10 SINE Alu 5 117 0 8 1499 258 32 0 0 chr9 119896906 119896937 -4179235 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 8 1499 925 124 21 0 chr9 119896965 119897110 -4179062 - B1_Mus1 SINE Alu 0 148 1 8 1499 1130 43 21 7 chr9 119897175 119897315 -4178857 + B1_Mus2 SINE Alu 1 142 -5 8 1499 823 258 193 38 chr9 119897363 119897710 -4178462 + Lx8 LINE L1 6932 7332 -141 8 1499 192 97 0 0 chr9 119897712 119897743 -4178429 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1499 521 71 495 10 chr9 119897774 119897873 -4178299 + B1_Mus2 SINE Alu 1 147 0 8 1499 1209 85 67 6 chr9 119897881 119898059 -4178113 + B2_Mm1t SINE B2 1 189 -4 8 1499 1341 98 60 0 chr9 119898063 119898246 -4177926 + B2_Mm2 SINE B2 2 195 0 8 1499 759 82 55 0 chr9 119898256 119898366 -4177806 + B1_Mus1 SINE Alu 24 139 -9 8 1499 246 62 0 0 chr9 119898381 119898413 -4177759 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1499 270 273 291 0 chr9 119898872 119898968 -4177204 + ID_B1 SINE B4 2 206 -18 8 1499 296 227 0 57 chr9 119898968 119899038 -4177134 + PB1D10 SINE Alu 45 110 -7 8 1499 299 290 56 65 chr9 119899020 119899051 -4177121 + MT2B LTR ERVL 130 235 -366 8 1499 350 247 0 52 chr9 119899039 119899051 -4177121 + B4 SINE B4 80 87 -205 8 1499 458 184 0 0 chr9 119899051 119899127 -4177045 + B1_Mus2 SINE Alu 3 78 -69 8 1499 261 211 0 0 chr9 119899127 119899184 -4176988 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 8 1499 831 201 0 0 chr9 119899183 119899362 -4176810 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1499 4482 14 2 2 chr9 119899365 119899858 -4176314 - MT2_Mm LTR ERVL 0 493 1 8 1499 773 201 7 7 chr9 119899863 119900140 -4176032 + (CATA)n Simple_repeat Simple_repeat 1 277 0 8 1499 804 209 0 0 chr9 119900123 119900300 -4175872 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 1499 262 156 22 0 chr9 119900300 119900345 -4175827 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 8 1499 185 0 40 0 chr9 119900982 119901007 -4175165 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1499 675 187 15 22 chr9 119901009 119901146 -4175026 - B1_Mur2 SINE Alu -1 148 13 8 1499 465 265 14 66 chr9 119901013 119901224 -4174948 - ID_B1 SINE B4 -1 223 21 8 1499 677 278 51 51 chr9 119901279 119901514 -4174658 - B4A SINE B4 -55 237 3 8 1499 351 0 0 0 chr9 119901579 119901618 -4174554 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1499 378 278 187 40 chr9 119901681 119901831 -4174341 + ID_B1 SINE B4 39 210 -14 8 1499 193 180 101 0 chr9 119901862 119901951 -4174221 + CT-rich Low_complexity Low_complexity 5 102 0 8 1499 789 225 0 0 chr9 119901951 119902093 -4174079 - B1_Mus1 SINE Alu -6 142 1 8 1499 272 341 82 22 chr9 119902142 119902277 -4173895 - MLT1L LTR MaLR -349 261 119 8 1499 389 346 56 0 chr9 119902356 119902518 -4173654 - Charlie25 DNA MER1_type -1410 1114 944 8 1499 884 225 65 23 chr9 119902764 119902978 -4173194 + ID_B1 SINE B4 2 224 0 8 1499 418 264 0 0 chr9 119903035 119903132 -4173040 - B1F2 SINE Alu -6 114 18 8 1499 405 0 0 0 chr9 119903807 119903852 -4172320 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1499 785 203 8 0 chr9 119903901 119904034 -4172138 + B1_Mur3 SINE Alu 3 136 -13 8 1499 439 233 8 8 chr9 119904034 119904164 -4172008 + CT-rich Low_complexity Low_complexity 2 131 0 8 1499 223 238 148 12 chr9 119904306 119904387 -4171785 + ID_B1 SINE B4 90 181 -43 8 1499 186 184 0 0 chr9 119904393 119904428 -4171744 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 8 1499 1019 73 37 0 chr9 119904428 119904564 -4171608 - B1_Mus1 SINE Alu -5 143 3 8 1499 186 184 0 0 chr9 119904564 119904577 -4171595 + (TTAA)n Simple_repeat Simple_repeat 1 13 0 8 1499 822 86 40 0 chr9 119904644 119904795 -4171377 + (TCCA)n Simple_repeat Simple_repeat 2 158 0 8 1499 824 201 21 0 chr9 119904893 119905037 -4171135 - B1_Mus2 SINE Alu 0 147 1 8 1499 358 93 19 0 chr9 119905429 119905483 -4170689 - ORR1A2 LTR MaLR 0 346 292 8 1499 888 27 0 0 chr9 119905495 119905607 -4170565 - B1_Mm SINE Alu 0 147 36 8 1499 34 0 0 0 chr9 119905608 119905642 -4170530 + AT_rich Low_complexity Low_complexity 1 34 0 8 1499 1102 95 0 13 chr9 119905658 119905807 -4170365 - B1_Mus1 SINE Alu -1 147 1 8 1499 2020 81 3 0 chr9 119905807 119906090 -4170082 - ORR1A2 LTR MaLR -43 284 1 8 1499 513 316 4 119 chr9 119906173 119906417 -4169755 - B3A SINE B2 0 216 1 8 1499 427 227 0 30 chr9 119906430 119906530 -4169642 - PB1D10 SINE Alu 0 117 21 8 1499 306 254 0 0 chr9 119906633 119906700 -4169472 + ID_B1 SINE B4 106 172 -52 8 1499 671 271 0 0 chr9 119906712 119906856 -4169316 - ID_B1 SINE B4 -1 223 80 8 1499 887 209 94 0 chr9 119906902 119907093 -4169079 + B3 SINE B2 2 210 -6 8 1499 380 314 0 83 chr9 119907133 119907265 -4168907 + ID_B1 SINE B4 84 204 -20 8 1499 333 281 83 0 chr9 119907338 119907459 -4168713 + RSINE1 SINE B4 1 131 -34 8 1499 1242 77 0 0 chr9 119907459 119907736 -4168436 + (CA)n Simple_repeat Simple_repeat 1 277 0 8 1499 201 74 0 0 chr9 119907785 119907812 -4168360 + (ATTG)n Simple_repeat Simple_repeat 1 27 0 8 1499 852 157 1 22 chr9 119907817 119907969 -4168203 - B1_Mm SINE Alu 0 147 2 8 1499 293 270 0 146 chr9 119907855 119907985 -4168187 - MT2B LTR ERVL -337 264 154 8 1499 264 301 99 80 chr9 119908317 119908530 -4167642 - B4A SINE B4 0 292 76 8 1499 195 42 0 0 chr9 119908565 119908589 -4167583 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 8 1499 264 367 153 16 chr9 119909586 119909809 -4166363 + L2 LINE L2 2578 2838 -581 8 1499 726 238 152 25 chr9 119909809 119910007 -4166165 + ID_B1 SINE B4 1 223 -1 8 1499 264 367 153 16 chr9 119910007 119910104 -4166068 + L2 LINE L2 2839 2942 -477 8 1499 437 178 185 9 chr9 119910295 119910403 -4165769 - B1_Mur1 SINE Alu -2 147 21 8 1499 229 268 99 0 chr9 119910399 119910470 -4165702 + PB1D9 SINE Alu 43 120 0 8 1499 439 126 109 67 chr9 119910640 119910759 -4165413 + B1F1 SINE Alu 25 148 -1 8 1499 1179 48 13 20 chr9 119911856 119912005 -4164167 - B1_Mus1 SINE Alu 0 148 1 8 1499 984 221 18 18 chr9 119912084 119912301 -4163871 + ID_B1 SINE B4 1 217 -7 8 1499 590 313 0 0 chr9 119912316 119912463 -4163709 + B1_Mur1 SINE Alu 3 149 0 8 1499 838 134 8 0 chr9 119912471 119912712 -4163460 + (GA)n Simple_repeat Simple_repeat 1 243 0 8 1499 1576 47 0 25 chr9 119912768 119912966 -4163206 - B2_Mm1a SINE B2 0 193 1 8 1499 928 170 0 26 chr9 119912969 119913120 -4163052 - B1_Mus2 SINE Alu 0 147 1 8 1499 403 167 119 0 chr9 119914109 119914193 -4161979 - B1_Mus2 SINE Alu -13 134 41 8 1499 1185 17 0 48 chr9 119914269 119914458 -4161714 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1499 1289 93 27 0 chr9 119914508 119914691 -4161481 - B2_Mm1a SINE B2 -5 188 1 8 1499 194 0 39 0 chr9 119914701 119914727 -4161445 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1499 1001 62 0 0 chr9 119914727 119914857 -4161315 - B1_Mus2 SINE Alu -8 139 10 8 1499 928 109 58 30 chr9 119914963 119915170 -4161002 - RMER10B LTR ERVL -235 207 1 8 1499 484 282 163 61 chr9 119915208 119915621 -4160551 - RMER17C-int LTR ERVK -83 3155 2701 8 1499 1685 36 0 0 chr9 119915670 119915862 -4160310 - B2_Mm1a SINE B2 0 193 2 8 1499 386 239 168 38 chr9 119916260 119916475 -4159697 + MTEa LTR MaLR 143 373 -6 9 1499 643 255 26 34 chr9 119917059 119917239 -4158933 - B3A SINE B2 -23 193 27 9 1499 769 184 0 28 chr9 119917241 119917255 -4158917 - B1_Mur2 SINE Alu 0 149 139 9 1499 939 110 73 0 chr9 119917255 119917391 -4158781 - B1_Mus1 SINE Alu 0 148 3 9 1499 769 184 0 28 chr9 119917391 119917521 -4158651 - B1_Mur2 SINE Alu -11 138 9 9 1499 212 221 0 181 chr9 119917489 119917583 -4158589 - B3A SINE B2 -121 77 1 9 1499 375 23 0 0 chr9 119917637 119917681 -4158491 + (TATG)n Simple_repeat Simple_repeat 1 44 0 9 1499 343 167 0 0 chr9 119917702 119917762 -4158410 - B2_Mm2 SINE B2 -66 129 70 9 1499 695 214 7 0 chr9 119918046 119918186 -4157986 + B1_Mur1 SINE Alu 7 147 -2 9 1499 197 132 26 0 chr9 119918231 119918269 -4157903 + GA-rich Low_complexity Low_complexity 2 40 0 9 1499 316 312 74 31 chr9 119918444 119918606 -4157566 - RMER15 LTR ERVL -70 505 337 9 1499 180 200 0 0 chr9 119919183 119919223 -4156949 + (CGTG)n Simple_repeat Simple_repeat 4 43 0 9 1499 181 0 33 33 chr9 119919264 119919294 -4156878 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 9 1499 1104 67 0 0 chr9 119919294 119919428 -4156744 - B1_Mus1 SINE Alu -13 135 2 9 1499 582 190 70 23 chr9 119919468 119919597 -4156575 - B1_Mur1 SINE Alu -2 147 13 9 1499 394 301 28 8 chr9 119919614 119919745 -4156427 - PB1D7 SINE Alu -9 140 12 9 1499 297 293 12 0 chr9 119919784 119919866 -4156306 + B3A SINE B2 1 83 -115 9 1499 372 327 32 19 chr9 119919933 119920089 -4156083 - RSINE1 SINE B4 -2 163 6 9 1499 243 0 0 0 chr9 119920545 119920572 -4155600 + (CGGGG)n Simple_repeat Simple_repeat 5 31 0 9 1499 315 309 143 0 chr9 119920721 119920847 -4155325 + L2b LINE L2 3228 3371 -4 9 1499 311 241 23 125 chr9 119921109 119921237 -4154935 + PB1D10 SINE Alu 3 117 0 9 1499 1224 54 0 0 chr9 119921288 119921435 -4154737 - B1_Mus2 SINE Alu 0 147 1 9 1499 824 188 35 0 chr9 119921710 119921854 -4154318 - B1_Mur1 SINE Alu 0 149 1 9 1499 360 200 115 10 chr9 119921863 119921959 -4154213 - ID_B1 SINE B4 -4 220 115 9 1499 235 286 44 0 chr9 119922577 119922668 -4153504 + (TG)n Simple_repeat Simple_repeat 2 96 0 9 1499 1228 61 0 0 chr9 119929259 119929406 -4146766 + B1_Mus1 SINE Alu 2 148 0 9 1499 702 222 166 6 chr9 119929732 119929913 -4146259 - ID_B1 SINE B4 -13 211 2 9 1500 729 250 137 5 chr9 119931661 119931858 -4144314 - ID_B1 SINE B4 0 224 2 9 1500 977 95 14 7 chr9 119931887 119932035 -4144137 + B1_Mur4 SINE Alu 2 150 0 9 1500 226 320 93 93 chr9 119932051 119932213 -4143959 + RSINE1 SINE B4 4 165 0 9 1500 187 360 12 0 chr9 119934228 119934314 -4141858 + MIR SINE MIR 162 248 -14 9 1500 571 221 8 8 chr9 119934345 119934473 -4141699 + RSINE1 SINE B4 3 130 -35 9 1500 658 169 110 0 chr9 119934508 119934626 -4141546 + B1_Mur1 SINE Alu 5 135 -14 9 1500 774 114 0 0 chr9 119934912 119935026 -4141146 - B1_Mus2 SINE Alu -25 122 9 9 1500 263 270 22 11 chr9 119935171 119935261 -4140911 + MIR SINE MIR 3 93 -169 9 1500 1356 85 32 11 chr9 119935275 119935465 -4140707 - B2_Mm2 SINE B2 0 195 2 9 1500 379 264 140 21 chr9 119935534 119935677 -4140495 - RSINE1 SINE B4 -4 161 2 9 1500 441 295 48 48 chr9 119935831 119935977 -4140195 - MTD LTR MaLR -230 189 44 9 1500 422 329 68 0 chr9 119935945 119936091 -4140081 - ID_B1 SINE B4 -67 157 2 9 1500 284 72 0 23 chr9 119936388 119936431 -4139741 - MTD LTR MaLR -379 42 1 9 1500 255 61 0 0 chr9 119936989 119937022 -4139150 + (CAGA)n Simple_repeat Simple_repeat 1 33 0 9 1500 630 0 0 0 chr9 119937211 119937281 -4138891 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 1500 643 193 18 0 chr9 119937281 119937395 -4138777 - B1_Mur3 SINE Alu -32 117 2 9 1500 435 63 0 0 chr9 119937417 119937480 -4138692 + (TTCG)n Simple_repeat Simple_repeat 2 64 0 9 1500 219 147 0 0 chr9 119937480 119937514 -4138658 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 9 1500 994 159 0 0 chr9 119937514 119937659 -4138513 - B1_Mur4 SINE Alu -5 145 1 9 1500 228 182 0 0 chr9 119937731 119937775 -4138397 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1500 413 335 104 59 chr9 119938070 119938340 -4137832 + MLT1G3 LTR MaLR 42 323 -272 9 1500 255 185 30 30 chr9 119938328 119938395 -4137777 + B1_Mur1 SINE Alu 81 147 -2 9 1500 733 154 244 17 chr9 119938415 119938587 -4137585 + B3 SINE B2 1 211 -5 9 1500 285 260 52 0 chr9 119938853 119938930 -4137242 + MER34A1 LTR ERV1 1 81 -506 9 1500 219 186 0 0 chr9 119939084 119939127 -4137045 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 9 1500 408 297 1 1 chr9 119939134 119939251 -4136921 - Lx9 LINE L1 -591 7053 6958 9 1500 222 236 0 0 chr9 119939280 119939335 -4136837 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 9 1500 326 312 73 16 chr9 119939399 119939591 -4136581 - Lx9 LINE L1 -128 7516 7314 9 1500 395 288 0 81 chr9 119939673 119939809 -4136363 - Lx9 LINE L1 -561 7083 6959 9 1500 907 199 81 10 chr9 119939849 119940047 -4136125 - B3 SINE B2 -4 212 1 9 1500 1255 113 38 0 chr9 119940317 119940502 -4135670 + B2_Mm2 SINE B2 1 192 -3 9 1500 1113 101 0 13 chr9 119940502 119940651 -4135521 + B1_Mus1 SINE Alu 1 148 0 9 1500 339 250 68 45 chr9 119940761 119940849 -4135323 - B1_Mus2 SINE Alu -57 90 1 9 1500 211 234 0 0 chr9 119940849 119940896 -4135276 + T-rich Low_complexity Low_complexity 1 47 0 9 1500 27 39 0 19 chr9 119940931 119940967 -4135205 + AT_rich Low_complexity Low_complexity 1 36 0 9 1500 1133 109 0 0 chr9 119940967 119941114 -4135058 - B1_Mus1 SINE Alu 0 148 2 9 1500 27 39 0 19 chr9 119941114 119941129 -4135043 + AT_rich Low_complexity Low_complexity 1 15 0 9 1500 342 0 0 0 chr9 119941132 119941170 -4135002 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 9 1500 225 0 0 0 chr9 119941188 119941213 -4134959 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1500 428 238 86 0 chr9 119941213 119941318 -4134854 - RSINE1 SINE B4 -40 125 12 9 1500 901 234 54 123 chr9 119941644 119941994 -4134178 + RLTR18 LTR ERVK 291 616 0 9 1500 1214 112 39 0 chr9 119942135 119942314 -4133858 - B2_Mm2 SINE B2 -9 186 1 9 1500 1159 260 11 174 chr9 119942453 119942895 -4133277 - MTE2a LTR MaLR -9 370 1 9 1500 369 0 0 0 chr9 119942995 119943036 -4133136 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 9 1500 348 24 0 0 chr9 119943081 119943122 -4133050 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 9 1500 1014 56 83 0 chr9 119943122 119943266 -4132906 - B2_Mm2 SINE B2 -38 157 2 9 1500 284 239 14 14 chr9 119944038 119944110 -4132062 + PB1D10 SINE Alu 2 73 -44 9 1500 272 220 208 10 chr9 119944207 119944308 -4131864 + L2 LINE L2 2760 2880 -539 9 1500 493 246 18 0 chr9 119944528 119944638 -4131534 + ID_B1 SINE B4 6 117 -107 9 1500 1136 197 15 0 chr9 119945081 119945284 -4130888 - B3 SINE B2 -9 207 2 9 1500 480 229 10 0 chr9 119945344 119945440 -4130732 - RSINE1 SINE B4 -55 110 14 9 1500 511 109 33 0 chr9 119945554 119945646 -4130526 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 9 1500 369 175 0 0 chr9 119945663 119945720 -4130452 - B1F1 SINE Alu -10 139 83 9 1500 232 279 0 122 chr9 119945720 119945761 -4130411 - ID_B1 SINE B4 -10 214 129 9 1500 495 0 0 0 chr9 119945765 119945820 -4130352 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 9 1500 459 200 30 17 chr9 119946065 119946202 -4129970 - PB1D10 SINE Alu 0 149 2 9 1500 288 238 35 35 chr9 119946219 119946306 -4129866 - MIR SINE MIR -75 133 47 9 1500 2640 140 10 10 chr9 119946967 119947384 -4128788 - MTC LTR MaLR 0 421 5 9 1500 805 219 7 0 chr9 119947567 119947713 -4128459 - B1_Mur2 SINE Alu 0 149 3 9 1500 314 307 63 32 chr9 119947831 119947989 -4128183 - L1MDa LINE L1 -5552 1081 919 9 1500 889 155 28 14 chr9 119948310 119948454 -4127718 + B1_Mur2 SINE Alu 2 147 -2 9 1500 384 266 0 0 chr9 119948902 119948981 -4127191 + B4 SINE B4 15 93 -199 9 1500 596 227 136 41 chr9 119948984 119949131 -4127041 + B3A SINE B2 4 164 -34 9 1500 264 59 0 0 chr9 119949131 119949165 -4127007 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1500 387 213 165 118 chr9 119949165 119949187 -4126985 + B2_Mm2 SINE B2 158 181 -14 9 1500 639 251 43 16 chr9 119949590 119949776 -4126396 - ID_B1 SINE B4 -30 194 4 9 1500 733 277 17 74 chr9 119949916 119950146 -4126026 - B4A SINE B4 -73 219 3 9 1500 400 247 12 0 chr9 119950170 119950251 -4125921 - ID SINE ID -142 82 1 9 1500 617 142 124 0 chr9 119950987 119951100 -4125072 - B1_Mur1 SINE Alu -16 133 7 9 1500 213 272 121 24 chr9 119951026 119951109 -4125063 - B4A SINE B4 -119 173 83 9 1500 204 184 0 0 chr9 119951130 119951179 -4124993 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1500 1119 73 0 0 chr9 119951286 119951436 -4124736 + (TG)n Simple_repeat Simple_repeat 1 150 0 9 1500 207 0 0 0 chr9 119951530 119951553 -4124619 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1500 1116 82 7 33 chr9 119951555 119951706 -4124466 - B1_Mus1 SINE Alu 0 148 2 9 1500 603 218 154 24 chr9 119951707 119951876 -4124296 - B3 SINE B2 -25 191 1 9 1500 934 256 9 14 chr9 119951886 119952100 -4124072 - B4A SINE B4 -66 226 14 9 1500 765 144 0 17 chr9 119953628 119953805 -4122367 + (CA)n Simple_repeat Simple_repeat 1 174 0 9 1500 750 223 61 0 chr9 119953903 119954051 -4122121 - RSINE1 SINE B4 -8 157 1 1 1500 221 308 0 0 chr9 119954051 119954103 -4122069 - B4 SINE B4 -198 94 43 9 1500 377 0 96 0 chr9 119955004 119955077 -4121095 + (CAGGG)n Simple_repeat Simple_repeat 4 83 0 1 1500 713 233 73 132 chr9 119955164 119955451 -4120721 + B4 SINE B4 1 270 -22 1 1500 811 166 0 16 chr9 119955479 119955738 -4120434 + (CA)n Simple_repeat Simple_repeat 1 254 0 1 1500 465 292 82 0 chr9 119956290 119956437 -4119735 - RSINE1 SINE B4 -4 161 3 1 1500 468 206 243 21 chr9 119956739 119956767 -4119405 + ID_B1 SINE B4 47 218 -2 1 1500 624 179 18 0 chr9 119956767 119956879 -4119293 + PB1D9 SINE Alu 1 114 -6 1 1500 650 283 31 6 chr9 119957019 119957179 -4118993 + RSINE1 SINE B4 1 164 -1 1 1500 423 254 0 0 chr9 119957186 119957308 -4118864 + (CA)n Simple_repeat Simple_repeat 1 122 0 1 1500 343 286 86 0 chr9 119957533 119957638 -4118534 - B1_Mur2 SINE Alu -5 115 2 1 1500 322 273 0 0 chr9 119957876 119957953 -4118219 + Charlie12 DNA MER1_type 32 108 -2765 1 1500 880 184 0 0 chr9 119957975 119958122 -4118050 + B1_Mur2 SINE Alu 1 147 -2 1 1500 876 123 31 0 chr9 119958123 119958285 -4117887 + CT-rich Low_complexity Low_complexity 2 168 0 1 1500 440 216 18 0 chr9 119958281 119958392 -4117780 + C-rich Low_complexity Low_complexity 5 117 0 1 1500 925 211 55 25 chr9 119958419 119958618 -4117554 - B3 SINE B2 -7 209 5 1 1500 399 241 0 0 chr9 119958625 119958712 -4117460 - RMER30 DNA MER1_type -114 88 2 1 1500 502 100 0 0 chr9 119958907 119958977 -4117195 - B2_Mm2 SINE B2 -125 70 1 1 1500 604 200 95 51 chr9 119961719 119961856 -4114316 - B1_Mur1 SINE Alu 0 149 7 1 1500 463 253 16 137 chr9 119961859 119962067 -4114105 - B3A SINE B2 -1 215 36 1 1500 300 240 0 14 chr9 119962066 119962139 -4114033 + MTE2b LTR MaLR 12 80 -299 1 1500 991 201 57 29 chr9 119962145 119962355 -4113817 - B3 SINE B2 0 216 1 1 1500 304 286 8 152 chr9 119962356 119962404 -4113768 + MTE2b LTR MaLR 73 118 -261 1 1500 942 143 0 20 chr9 119962404 119962554 -4113618 + B1_Mus2 SINE Alu 1 147 0 1 1500 304 286 8 152 chr9 119962554 119962637 -4113535 + MTE2b LTR MaLR 119 185 -194 1 1500 5202 66 5 5 chr9 119962827 119963493 -4112679 + L1Md_F2 LINE L1 5915 6580 -2 1 1500 733 256 22 84 chr9 119964499 119964725 -4111447 + ID_B1 SINE B4 2 213 -11 1 1500 183 80 0 0 chr9 119964726 119964751 -4111421 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1500 246 105 0 0 chr9 119965734 119965772 -4110400 + (TCTCCC)n Simple_repeat Simple_repeat 3 40 0 1 1500 1275 89 0 0 chr9 119965776 119965955 -4110217 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1500 238 228 155 52 chr9 119966828 119966925 -4109247 + B1F SINE Alu 32 138 -11 1 1500 503 277 53 46 chr9 119967157 119967334 -4108838 + B4 SINE B4 92 288 -4 1 1500 249 33 0 0 chr9 119967350 119967380 -4108792 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1500 228 324 0 0 chr9 119967414 119967556 -4108616 + (CA)n Simple_repeat Simple_repeat 2 143 0 1 1500 1292 180 9 0 chr9 119967722 119967944 -4108228 + URR1B DNA MER1_type 1 224 -1 1 1500 241 281 79 13 chr9 119968256 119968350 -4107822 - B4 SINE B4 -188 104 5 1 1500 711 54 0 0 chr9 119968362 119968454 -4107718 + (TCTA)n Simple_repeat Simple_repeat 4 95 0 1 1500 505 288 0 15 chr9 119968848 119968982 -4107190 - B1F SINE Alu -7 142 11 1 1500 221 218 55 0 chr9 119968982 119969037 -4107135 + B4 SINE B4 2 59 -233 1 1500 355 344 0 0 chr9 119969086 119969182 -4106990 + B4 SINE B4 2 97 -195 1 1500 1190 88 0 0 chr9 119969182 119969329 -4106843 + B1_Mus1 SINE Alu 2 148 0 1 1500 264 59 0 0 chr9 119969329 119969363 -4106809 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1500 559 298 175 12 chr9 119969376 119969627 -4106545 + B4A SINE B4 1 292 0 1 1500 320 254 16 0 chr9 119969634 119969756 -4106416 + (CATA)n Simple_repeat Simple_repeat 4 127 0 1 1500 453 323 93 9 chr9 119969786 119970011 -4106161 + MER67C LTR ERV1 454 697 -14 1 1500 2992 26 3 11 chr9 119970025 119970374 -4105798 + ORR1A0 LTR MaLR 1 346 0 1 1500 14168 44 15 8 chr9 119970375 119972153 -4104019 + ORR1A0-int LTR MaLR 2 1791 -1 1 1500 3085 29 0 0 chr9 119972154 119972500 -4103672 + ORR1A0 LTR MaLR 1 346 0 1 1500 1007 139 190 22 chr9 119972683 119972867 -4103305 + B3 SINE B2 2 216 0 1 1500 313 183 106 106 chr9 119973283 119973387 -4102785 - PB1 SINE Alu 0 127 24 1 1500 529 229 67 0 chr9 119974158 119974263 -4101909 - RSINE1 SINE B4 -16 149 38 1 1500 256 356 48 7 chr9 119975088 119975235 -4100937 + RMER15 LTR ERVL 408 560 -15 1 1500 1445 58 5 41 chr9 119975670 119975867 -4100305 - B2_Mm1t SINE B2 -2 191 2 1 1500 573 105 0 0 chr9 119976179 119976265 -4099907 + (CCA)n Simple_repeat Simple_repeat 1 86 0 1 1500 774 265 15 44 chr9 119976268 119976473 -4099699 - ID_B1 SINE B4 0 224 26 1 1500 1029 139 0 0 chr9 119976524 119976668 -4099504 + B1_Mur4 SINE Alu 1 144 -6 1 1500 670 242 15 0 chr9 119976883 119977015 -4099157 - B1F SINE Alu -3 146 13 1 1500 254 295 112 70 chr9 119976884 119977143 -4099029 + YREP_Mm Unknown Unknown 181 450 -1362 1 1500 612 222 110 22 chr9 119978370 119978544 -4097628 - B3A SINE B2 -4 189 1 1 1500 602 242 172 0 chr9 119978563 119978749 -4097423 - ID_B1 SINE B4 -2 222 5 1 1500 252 266 85 39 chr9 119979218 119979347 -4096825 - LTR40c LTR ERVL -200 265 131 1 1500 420 260 0 0 chr9 119979347 119979493 -4096679 + (TG)n Simple_repeat Simple_repeat 1 146 0 1 1500 684 250 33 43 chr9 119979499 119979683 -4096489 - B3A SINE B2 -16 182 1 1 1500 764 200 109 16 chr9 119979710 119979893 -4096279 - B3 SINE B2 -1 215 16 1 1500 229 250 237 0 chr9 119980274 119980350 -4095822 - PB1 SINE Alu -7 120 27 1 1500 1019 179 256 18 chr9 119980394 119980679 -4095493 - ORR1D1 LTR MaLR -21 353 1 1 1500 437 255 6 135 chr9 119980734 119980897 -4095275 + B1F SINE Alu 5 146 -3 1 1500 285 223 155 8 chr9 119981604 119981734 -4094438 + ID_B1 SINE B4 3 160 -64 1 1500 357 294 55 0 chr9 119981779 119981888 -4094284 + MLT1A LTR MaLR 196 310 -64 1 1500 455 239 11 0 chr9 119981961 119982053 -4094119 - ID_B1 SINE B4 -33 191 99 1 1500 199 211 135 0 chr9 119982178 119982230 -4093942 - MIRm SINE MIR -107 169 111 1 1500 1170 111 10 15 chr9 119982797 119982999 -4093173 + Lx3_Mus LINE L1 6809 7009 0 1 1500 769 168 20 53 chr9 119983017 119983168 -4093004 + B1_Mur4 SINE Alu 5 150 0 1 1500 1206 75 0 0 chr9 119983173 119983320 -4092852 + B1_Mus2 SINE Alu 1 147 0 1 1500 213 247 0 0 chr9 119983320 119983392 -4092780 + A-rich Low_complexity Low_complexity 1 72 0 1 1500 279 0 0 0 chr9 119983393 119983424 -4092748 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1500 555 16 0 0 chr9 119983431 119983495 -4092677 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 1 1500 303 22 43 22 chr9 119984402 119984448 -4091724 - HAL1-3A_ME LINE L1 -837 2021 1975 1 1500 507 126 47 0 chr9 119984454 119984581 -4091591 + (TG)n Simple_repeat Simple_repeat 2 134 0 1 1500 3710 163 93 143 chr9 119984638 119985492 -4090680 - RLTR25B LTR ERVK 0 1028 255 1 1500 1015 39 131 0 chr9 119985492 119985622 -4090550 - B1_Mus2 SINE Alu 0 147 1 1 1500 3710 163 93 143 chr9 119985622 119985849 -4090323 - RLTR25B LTR ERVK -774 254 1 1 1500 550 282 74 123 chr9 119985923 119986247 -4089925 + RLTR20D LTR ERVK 261 568 0 1 1500 1125 238 49 8 chr9 119986368 119986635 -4089537 + B4 SINE B4 3 280 -12 1 1500 332 190 105 48 chr9 119986858 119986963 -4089209 - MER67C LTR ERV1 0 711 601 1 1500 445 36 0 0 chr9 119987360 119987415 -4088757 + RLTR31_Mm LTR ERVK 20 74 -487 1 1500 384 289 22 7 chr9 119987437 119987573 -4088599 - Lx8 LINE L1 -276 7197 7060 1 1500 2071 265 23 6 chr9 119987565 119988082 -4088090 - Lx8 LINE L1 -591 6882 6357 1 1500 217 207 17 6 chr9 119988128 119988188 -4087984 - PB1D7 SINE Alu -3 146 78 1 1500 465 245 219 66 chr9 119988317 119988636 -4087536 - RLTR9A LTR ERVK 0 368 1 1 1500 883 250 30 10 chr9 119988740 119988938 -4087234 + B3 SINE B2 1 202 -14 1 1500 185 94 31 0 chr9 119989183 119989215 -4086957 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 1 1500 207 0 0 0 chr9 119989387 119989410 -4086762 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1500 189 0 0 0 chr9 119989570 119989591 -4086581 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1500 351 287 36 61 chr9 119989767 119989882 -4086290 - MTE-int LTR MaLR -543 1037 935 1 1500 840 263 5 26 chr9 119989899 119990090 -4086082 + B3 SINE B2 5 191 -25 1 1500 792 304 35 92 chr9 119990101 119990449 -4085723 - MTE-int LTR MaLR -652 928 601 1 1500 981 180 82 5 chr9 119990472 119990667 -4085505 - B3 SINE B2 -5 211 2 1 1500 304 238 35 23 chr9 119990776 119990862 -4085310 + MTE2b LTR MaLR 180 266 -113 1 1500 246 219 40 27 chr9 119990832 119990907 -4085265 + MTE2b LTR MaLR 191 266 -113 1 1500 238 233 40 27 chr9 119990877 119990952 -4085220 + MTE2b LTR MaLR 191 266 -113 1 1500 246 219 40 27 chr9 119990922 119990997 -4085175 + MTE2b LTR MaLR 191 266 -113 1 1500 414 238 26 71 chr9 119991012 119991080 -4085092 + MTEa LTR MaLR 191 253 -126 1 1500 987 274 81 36 chr9 119991080 119991440 -4084732 - MTE2b LTR MaLR -2 377 2 1 1500 316 235 145 24 chr9 119991440 119991523 -4084649 + MTEa LTR MaLR 268 360 -19 1 1500 297 0 0 0 chr9 119991961 119991994 -4084178 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 1 1500 386 354 140 12 chr9 119992313 119992570 -4083602 + LTR16A LTR ERVL 73 362 -89 1 1500 626 192 188 50 chr9 119993220 119993401 -4082771 + B4A SINE B4 85 290 -2 1 1500 183 156 0 0 chr9 119993403 119993435 -4082737 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1500 655 142 19 0 chr9 119994123 119994229 -4081943 - B1_Mur2 SINE Alu 0 149 42 1 1500 231 206 79 40 chr9 119994166 119994242 -4081930 - RLTR25B LTR ERVK -519 509 431 1 1500 606 179 13 3 chr9 119994290 119994595 -4081577 + CT-rich Low_complexity Low_complexity 1 308 0 1 1500 301 297 60 51 chr9 119994850 119994967 -4081205 + L1MC4 LINE L1 7624 7741 -141 1 1500 501 316 16 44 chr9 119994978 119995160 -4081012 - B3 SINE B2 -38 178 2 1 1500 421 301 60 56 chr9 119995160 119995375 -4080797 + L1MC4 LINE L1 7760 7975 -67 1 1500 440 281 55 48 chr9 119995702 119995848 -4080324 - B1F1 SINE Alu -2 147 1 1 1500 1149 232 42 118 chr9 119996055 119996405 -4079767 + MTE2a LTR MaLR 1 323 -56 1 1500 359 232 133 31 chr9 119996405 119996491 -4079681 + ORR1C2 LTR MaLR 1 96 -278 1 1500 451 19 0 0 chr9 119996491 119996544 -4079628 - ORR1A2 LTR MaLR -2 324 272 1 1500 1047 82 0 0 chr9 119996578 119996713 -4079459 - B1_Mus1 SINE Alu 0 148 14 1 1500 2018 98 42 3 chr9 119996711 119996723 -4079449 - ORR1A2 LTR MaLR -29 298 287 1 1500 854 93 273 0 chr9 119996723 119996862 -4079310 - B2_Mm2 SINE B2 -18 177 1 1 1500 2018 98 42 3 chr9 119996862 119997136 -4079036 - ORR1A2 LTR MaLR -41 286 1 1 1500 309 228 12 48 chr9 119997139 119997208 -4078964 + ORR1C2 LTR MaLR 105 171 -213 1 1500 434 18 18 0 chr9 119997208 119997263 -4078909 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1500 641 192 115 38 chr9 119997263 119997420 -4078752 + ORR1C2 LTR MaLR 216 384 0 1 1500 660 247 75 27 chr9 119998328 119998515 -4077657 + B3A SINE B2 3 198 0 1 1500 566 318 96 37 chr9 119998570 119998841 -4077331 - B4A SINE B4 0 292 6 1 1500 894 203 14 46 chr9 119999030 119999247 -4076925 - B3 SINE B2 -6 210 1 1 1500 187 306 20 0 chr9 119999391 119999440 -4076732 + MIRc SINE MIR 42 91 -177 1 1500 573 184 0 0 chr9 119999440 119999608 -4076564 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 1500 1762 68 17 4 chr9 119999762 120000000 -4076172 - ORR1A2 LTR MaLR 0 327 87 1 1500 547 81 0 44 chr9 120000000 120000090 -4076082 - ORR1A2 LTR MaLR -241 86 1 1 1500 266 278 65 22 chr9 120000100 120000192 -4075980 + MT2B LTR ERVL 162 257 -344 2 1500 519 235 0 0 chr9 120000115 120000213 -4075959 + B1_Mus2 SINE Alu 26 123 -24 3 1500 423 329 40 8 chr9 120000598 120000756 -4075416 + B4 SINE B4 85 249 -43 4 1500 791 220 0 0 chr9 120000772 120000913 -4075259 + B1_Mus1 SINE Alu 2 142 -6 5 1500 240 35 0 0 chr9 120000915 120000944 -4075228 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1500 318 98 0 0 chr9 120001721 120001772 -4074400 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1500 674 254 210 0 chr9 120001782 120002006 -4074166 - B4 SINE B4 -21 271 1 8 1500 994 159 0 0 chr9 120002270 120002415 -4073757 - B1_Mus2 SINE Alu -1 146 2 9 1500 898 191 14 0 chr9 120002451 120002598 -4073574 + B1_Mur2 SINE Alu 1 149 0 1 1500 189 0 0 0 chr9 120002625 120002646 -4073526 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1500 548 252 82 0 chr9 120002646 120002781 -4073391 + B1F1 SINE Alu 2 147 -2 1 1500 444 241 0 0 chr9 120004101 120004188 -4071984 - PB1D10 SINE Alu 0 117 31 1 1500 725 309 170 104 chr9 120004258 120004373 -4071799 - L1M5 LINE L1 -2406 3740 3609 1 1500 862 209 21 132 chr9 120004373 120004434 -4071738 + B3 SINE B2 1 56 -160 1 1500 1481 63 11 0 chr9 120004434 120004624 -4071548 + B2_Mm1t SINE B2 1 192 -1 1 1500 862 209 21 132 chr9 120004624 120004805 -4071367 + B3 SINE B2 57 216 0 1 1500 725 309 170 104 chr9 120004805 120005295 -4070877 - L1M5 LINE L1 -2538 3608 3095 1 1500 1170 199 68 130 chr9 120005403 120005812 -4070360 - ORR1C2 LTR MaLR 0 384 1 1 1500 255 287 11 0 chr9 120005915 120006002 -4070170 - L1M5 LINE L1 -3336 2810 2723 1 1500 242 29 29 0 chr9 120006273 120006308 -4069864 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 1 1500 798 113 202 0 chr9 120006308 120006432 -4069740 - B1_Mur4 SINE Alu 0 150 2 1 1500 329 286 0 0 chr9 120006488 120006558 -4069614 - RSINE1 SINE B4 -41 124 55 2 1500 307 337 18 72 chr9 120006590 120006724 -4069448 - L1M5 LINE L1 -3545 2601 2469 1 1500 1416 66 44 0 chr9 120006724 120006905 -4069267 - B2_Mm2 SINE B2 -4 191 3 2 1500 307 337 18 72 chr9 120006905 120006991 -4069181 - L1M5 LINE L1 -3678 2468 2393 1 1500 879 187 0 0 chr9 120007024 120007163 -4069009 - B1_Mur2 SINE Alu -9 140 2 2 1500 272 200 0 77 chr9 120007176 120007241 -4068931 + ID_B1 SINE B4 165 224 0 2 1500 216 67 0 0 chr9 120007830 120007860 -4068312 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1500 543 254 15 30 chr9 120008272 120008390 -4067782 + B3 SINE B2 3 118 -98 2 1500 760 290 27 18 chr9 120008390 120008598 -4067574 - RMER20A LTR ERVK 0 516 307 2 1500 6192 161 105 12 chr9 120008598 120009561 -4066611 + RMER12 LTR ERVK 1 988 -334 2 1500 279 0 0 0 chr9 120009561 120009592 -4066580 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1500 6192 161 105 12 chr9 120009592 120009838 -4066334 + RMER12 LTR ERVK 989 1322 0 2 1500 570 183 29 0 chr9 120009838 120009942 -4066230 - RMER20A LTR ERVK -204 312 206 2 1500 352 224 116 30 chr9 120009964 120010092 -4066080 - MTC LTR MaLR -264 132 5 2 1500 371 188 127 31 chr9 120010282 120010444 -4065728 + RMER1B Other Other 777 823 -243 3 1500 1334 203 44 79 chr9 120010436 120010842 -4065330 + RMER1C Other Other 934 1325 -17 3 1500 216 223 185 130 chr9 120010866 120010974 -4065198 + B1F SINE Alu 36 149 0 3 1500 1407 52 41 0 chr9 120010976 120011148 -4065024 + B2_Mm2 SINE B2 3 181 -14 3 1500 495 0 0 0 chr9 120011148 120011203 -4064969 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 3 1500 235 103 52 0 chr9 120011282 120011297 -4064875 + A-rich Low_complexity Low_complexity 2 16 0 3 1500 1174 55 7 0 chr9 120011297 120011442 -4064730 + B1_Mm SINE Alu 2 147 0 3 1500 235 103 52 0 chr9 120011442 120011484 -4064688 + A-rich Low_complexity Low_complexity 17 61 0 3 1500 2112 151 0 3 chr9 120011505 120011817 -4064355 + RLTR10E LTR ERVK 1 311 0 3 1500 416 165 33 0 chr9 120011817 120011908 -4064264 + MMERVK10C-int LTR ERVK 1 94 -7487 3 1500 11446 113 0 0 chr9 120011906 120013559 -4062613 + MMERVK10C-int LTR ERVK 275 1927 -5654 3 1500 25149 79 0 7 chr9 120013549 120016616 -4059556 + MMERVK10C-int LTR ERVK 3874 6931 -650 3 1500 4334 25 0 0 chr9 120016616 120017098 -4059074 + LTRIS_Mm LTR ERV1 1 482 0 3 1500 25149 79 0 7 chr9 120017098 120017259 -4058913 + MMERVK10C-int LTR ERVK 6932 7088 -493 3 1500 2600 95 82 91 chr9 120017259 120017745 -4058427 + RLTR45 LTR ERVK 1 482 0 4 1500 25149 112 5 20 chr9 120017745 120018061 -4058111 + MMERVK10C-int LTR ERVK 7089 7422 -258 3 1500 1951 151 0 31 chr9 120018137 120018458 -4057714 + RLTR10E LTR ERVK 1 311 0 4 1500 994 78 0 15 chr9 120018459 120018590 -4057582 + B1_Mus1 SINE Alu 20 148 0 4 1500 468 241 234 7 chr9 120018653 120018798 -4057374 + B3A SINE B2 25 197 -19 4 1500 776 150 12 135 chr9 120018798 120018968 -4057204 + B1_Mur3 SINE Alu 1 149 0 4 1500 297 275 216 56 chr9 120018968 120018984 -4057188 + B3 SINE B2 198 212 -4 4 1500 219 69 0 0 chr9 120019053 120019082 -4057090 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4 1500 1071 84 28 0 chr9 120019084 120019226 -4056946 - B1_Mus1 SINE Alu -1 147 2 4 1500 180 0 0 0 chr9 120019299 120019319 -4056853 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 4 1500 26 30 0 0 chr9 120019319 120019352 -4056820 + AT_rich Low_complexity Low_complexity 1 33 0 4 1500 406 223 37 37 chr9 120020078 120020185 -4055987 - B1F2 SINE Alu 0 149 43 4 1500 461 241 95 43 chr9 120020413 120020582 -4055590 - B3A SINE B2 -1 215 39 5 1500 324 234 105 99 chr9 120020709 120020772 -4055400 + ID_B1 SINE B4 20 107 -185 5 1500 618 123 160 0 chr9 120020772 120020878 -4055294 + B1_Mus1 SINE Alu 2 124 -24 5 1500 1280 42 12 0 chr9 120020872 120021037 -4055135 + B2_Mm1t SINE B2 26 192 -1 5 1500 420 209 126 43 chr9 120021251 120021372 -4054800 + B1_Mus2 SINE Alu 2 135 -12 5 1500 1212 42 7 0 chr9 120021372 120021516 -4054656 + B1_Mm SINE Alu 3 147 0 5 1500 420 239 58 71 chr9 120021516 120021551 -4054621 + B1_Mus2 SINE Alu 119 147 0 5 1500 221 0 35 0 chr9 120021564 120021593 -4054579 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1500 304 268 14 0 chr9 120021769 120021840 -4054332 + ID4_ SINE ID 2 73 -10 5 1500 677 203 0 21 chr9 120022048 120022189 -4053983 - B1_Mur4 SINE Alu 0 150 13 5 1500 389 287 28 108 chr9 120022049 120022225 -4053947 - B4 SINE B4 -68 224 63 5 1500 247 176 0 50 chr9 120022835 120022851 -4053321 + polypurine Low_complexity Low_complexity 2 16 0 6 1500 1291 27 0 0 chr9 120022851 120022998 -4053174 + B1_Mus2 SINE Alu 1 147 0 6 1500 247 176 0 50 chr9 120022998 120023041 -4053131 + polypurine Low_complexity Low_complexity 17 58 0 6 1500 205 364 6 17 chr9 120023577 120023753 -4052419 + G-rich Low_complexity Low_complexity 4 177 0 6 1500 269 333 25 0 chr9 120023675 120023834 -4052338 + (TGGG)n Simple_repeat Simple_repeat 1 163 0 6 1500 456 212 17 34 chr9 120025086 120025203 -4050969 - PB1D9 SINE Alu -2 118 4 6 1500 437 216 0 43 chr9 120025832 120025924 -4050248 - PB1D10 SINE Alu 0 117 30 6 1500 755 200 23 0 chr9 120026266 120026396 -4049776 + RSINE1 SINE B4 3 135 -30 6 1500 387 0 0 0 chr9 120026402 120026445 -4049727 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1500 492 248 66 113 chr9 120026775 120027059 -4049113 - MTEa LTR MaLR -7 372 60 6 1500 369 331 204 4 chr9 120027087 120027357 -4048815 + Tigger7 DNA MER2_type 94 417 -2074 7 1500 528 349 146 16 chr9 120027374 120027812 -4048360 + Tigger7 DNA MER2_type 461 955 -1536 7 1500 400 269 7 65 chr9 120027828 120027967 -4048205 + B3A SINE B2 67 197 -1 7 1500 513 138 25 0 chr9 120027993 120028073 -4048099 + PB1D9 SINE Alu 26 107 -13 7 1500 1248 99 10 40 chr9 120028073 120028246 -4047926 + B2_Mm1a SINE B2 1 171 -22 7 1500 567 0 0 0 chr9 120028246 120028309 -4047863 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1500 1248 99 10 40 chr9 120028309 120028334 -4047838 + B2_Mm1a SINE B2 172 193 0 7 1500 226 198 264 11 chr9 120028321 120028408 -4047764 + Tigger7 DNA MER2_type 1701 1809 -682 7 1500 600 332 128 33 chr9 120028888 120029277 -4046895 + LTR16C LTR ERVL 12 437 -52 7 1500 273 281 39 109 chr9 120030672 120030800 -4045372 - PB1D9 SINE Alu 0 120 2 7 1500 1261 48 0 0 chr9 120031714 120031860 -4044312 + B1_Mus2 SINE Alu 2 147 0 7 1500 180 125 0 0 chr9 120032057 120032089 -4044083 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1500 507 33 0 0 chr9 120032089 120032149 -4044023 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 1500 473 138 2 279 chr9 120032219 120032364 -4043808 - B3 SINE B2 -45 153 50 8 1500 682 218 37 8 chr9 120032392 120032526 -4043646 - B1_Mus1 SINE Alu -6 142 5 8 1500 360 202 92 35 chr9 120033314 120033401 -4042771 + RSINE1 SINE B4 46 137 -28 8 1500 1277 74 6 28 chr9 120033672 120033844 -4042328 + B2_Mm2 SINE B2 1 170 -25 8 1500 5034 4 0 0 chr9 120033844 120034390 -4041782 + L1Md_A LINE L1 6037 6582 0 8 1500 277 284 33 43 chr9 120034399 120034491 -4041681 + PB1D9 SINE Alu 14 104 -16 8 1500 902 143 14 7 chr9 120034654 120034795 -4041377 + B1_Mur3 SINE Alu 1 142 -7 8 1500 215 298 83 0 chr9 120034971 120035055 -4041117 + PB1D10 SINE Alu 18 108 -9 8 1500 1094 102 0 20 chr9 120035336 120035486 -4040686 - B1_Mus1 SINE Alu 0 148 2 8 1500 853 181 0 45 chr9 120035660 120035816 -4040356 - B1_Mur4 SINE Alu 0 150 2 8 1500 222 241 222 0 chr9 120035938 120035992 -4040180 - PB1D10 SINE Alu -7 110 45 9 1500 216 217 150 0 chr9 120035997 120036057 -4040115 - ID4_ SINE ID -13 70 2 9 1500 713 222 34 98 chr9 120036098 120036188 -4039984 - MER2 DNA MER2_type -2 343 254 9 1500 1094 68 7 27 chr9 120036188 120036338 -4039834 + B1_Mm SINE Alu 1 147 0 9 1500 713 222 34 98 chr9 120036338 120036452 -4039720 - MER2 DNA MER2_type -92 253 152 9 1500 275 169 111 14 chr9 120037470 120037542 -4038630 + B1_Mur3 SINE Alu 2 80 -69 9 1500 314 186 169 34 chr9 120038138 120038227 -4037945 + B1_Mus2 SINE Alu 2 102 -45 9 1500 1352 124 15 0 chr9 120038467 120038669 -4037503 + U17 snRNA snRNA 1 205 -2 9 1500 776 85 137 15 chr9 120041270 120041401 -4034771 + B1_Mus1 SINE Alu 2 148 0 9 1500 877 103 63 8 chr9 120041641 120041768 -4034404 - B1_Mus1 SINE Alu -11 137 4 9 1500 797 106 79 31 chr9 120042029 120042156 -4034016 - B1_Mus1 SINE Alu -13 135 3 9 1500 442 235 92 8 chr9 120043386 120043506 -4032666 + RSINE1 SINE B4 4 133 -32 1 1500 348 250 0 0 chr9 120044120 120044204 -4031968 + B3A SINE B2 102 185 -13 1 1500 504 0 0 0 chr9 120044281 120044337 -4031835 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1500 294 29 0 0 chr9 120045880 120045915 -4030257 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1500 978 144 0 14 chr9 120045915 120046052 -4030120 - B1_Mm SINE Alu -10 137 1 1 1500 27 29 0 0 chr9 120046053 120046087 -4030085 + AT_rich Low_complexity Low_complexity 1 34 0 1 1500 1113 92 91 6 chr9 120046088 120046253 -4029919 + B2_Mm1t SINE B2 1 179 -14 1 1500 299 175 0 22 chr9 120046300 120046366 -4029806 + B2_Mm2 SINE B2 47 109 -107 1 1500 58 28 0 0 chr9 120046378 120046450 -4029722 + AT_rich Low_complexity Low_complexity 1 72 0 1 1500 260 300 69 52 chr9 120046759 120046875 -4029297 - MER77 LTR ERVL -441 166 49 1 1500 21 57 0 0 chr9 120046902 120046937 -4029235 + AT_rich Low_complexity Low_complexity 1 35 0 1 1500 996 206 32 46 chr9 120046937 120047156 -4029016 - B3 SINE B2 0 216 1 1 1500 1125 103 0 0 chr9 120047165 120047340 -4028832 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1500 1181 156 24 20 chr9 120047340 120047547 -4028625 - ORR1A2 LTR MaLR -165 213 1 1 1500 476 252 30 0 chr9 120047589 120047688 -4028484 - B1F SINE Alu -18 131 30 1 1500 1050 101 0 0 chr9 120047830 120047969 -4028203 + B1_Mus2 SINE Alu 3 141 -6 1 1500 215 167 19 0 chr9 120047974 120048016 -4028156 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1500 351 0 0 0 chr9 120048016 120048055 -4028117 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1500 215 167 19 0 chr9 120048055 120048066 -4028106 + (TA)n Simple_repeat Simple_repeat 1 11 0 1 1500 783 188 0 75 chr9 120048084 120048245 -4027927 - B1_Mur1 SINE Alu 0 149 1 1 1500 543 291 84 64 chr9 120048266 120048339 -4027833 - B4 SINE B4 -3 289 205 1 1500 1580 113 14 0 chr9 120048339 120048561 -4027611 + URR1B DNA MER1_type 1 225 0 1 1500 543 291 84 64 chr9 120048561 120048689 -4027483 - B4 SINE B4 -88 204 84 1 1500 279 0 0 0 chr9 120048704 120048735 -4027437 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1500 321 283 49 93 chr9 120049081 120049264 -4026908 + RMER15 LTR ERVL 10 184 -391 1 1500 545 317 76 20 chr9 120049254 120049505 -4026667 + RMER15 LTR ERVL 306 570 -5 1 1500 518 161 32 11 chr9 120049505 120049599 -4026573 - ID_B1 SINE B4 -127 97 2 1 1500 392 228 13 0 chr9 120049599 120049671 -4026501 - PB1D7 SINE Alu -47 73 1 1 1500 675 304 96 52 chr9 120050110 120050474 -4025698 - MTD LTR MaLR -39 380 1 1 1500 587 206 79 0 chr9 120050561 120050687 -4025485 + B1_Mur2 SINE Alu 14 149 0 1 1500 237 288 111 12 chr9 120050820 120050901 -4025271 + B3A SINE B2 103 191 -7 1 1500 1403 80 16 0 chr9 120050907 120051094 -4025078 + B2_Mm2 SINE B2 2 191 -4 1 1500 514 230 7 23 chr9 120052876 120053184 -4022988 + (TG)n Simple_repeat Simple_repeat 1 302 0 1 1500 444 257 153 7 chr9 120053186 120053323 -4022849 - RSINE1 SINE B4 -2 163 7 1 1500 641 96 174 46 chr9 120054226 120054335 -4021837 + B1_Mur2 SINE Alu 26 148 -1 1 1500 378 0 0 0 chr9 120054390 120054432 -4021740 + (TATG)n Simple_repeat Simple_repeat 4 45 0 1 1500 943 254 29 20 chr9 120054479 120054724 -4021448 + MTD LTR MaLR 1 247 -172 1 1500 23 33 0 0 chr9 120054725 120054755 -4021417 + AT_rich Low_complexity Low_complexity 1 30 0 1 1500 1248 68 108 0 chr9 120054755 120054931 -4021241 + B2_Mm2 SINE B2 1 195 0 1 1500 610 284 115 79 chr9 120055266 120055622 -4020550 - MLT1B LTR MaLR -14 376 8 1 1500 186 103 0 0 chr9 120055756 120055785 -4020387 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1500 547 327 6 0 chr9 120055793 120055955 -4020217 - RSINE1 SINE B4 -1 164 2 1 1500 195 42 0 0 chr9 120056368 120056392 -4019780 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1500 282 56 0 0 chr9 120056422 120056458 -4019714 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1500 997 234 115 54 chr9 120056654 120057001 -4019171 + MTD LTR MaLR 5 404 -15 1 1500 798 136 8 8 chr9 120057007 120057133 -4019039 - RLTR11A LTR ERVK -3 525 400 1 1500 370 215 0 0 chr9 120057131 120057196 -4018976 - tRNA-Lys-AAG tRNA tRNA -11 65 1 1 1500 339 323 11 21 chr9 120057190 120057285 -4018887 - B1F SINE Alu -35 114 21 1 1500 222 208 0 0 chr9 120057723 120057771 -4018401 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1 1500 452 167 30 91 chr9 120057771 120057903 -4018269 - MYSERV6-int LTR ERVK -2304 6655 6532 1 1500 438 207 0 65 chr9 120057934 120058027 -4018145 - RLTR15 LTR ERVK -253 106 20 1 1500 280 281 29 29 chr9 120058574 120058713 -4017459 + T-rich Low_complexity Low_complexity 5 143 0 1 1500 238 333 29 68 chr9 120059248 120059351 -4016821 + Lx8 LINE L1 7167 7265 -208 1 1500 230 184 0 0 chr9 120059370 120059408 -4016764 + RMER15 LTR ERVL 421 458 -117 1 1500 1548 11 0 0 chr9 120059488 120059666 -4016506 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1500 537 118 146 31 chr9 120059674 120059770 -4016402 - B3 SINE B2 -109 107 1 1 1500 384 276 61 30 chr9 120060259 120060390 -4015782 - L1MC4 LINE L1 -5 8037 7903 1 1500 271 242 0 0 chr9 120060532 120060594 -4015578 - L1MC4 LINE L1 -235 7647 7586 1 1500 210 241 0 18 chr9 120060631 120060686 -4015486 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1500 420 237 164 17 chr9 120060691 120060914 -4015258 - B4A SINE B4 -6 286 7 1 1500 668 277 37 18 chr9 120061168 120061385 -4014787 + ID_B1 SINE B4 1 221 -3 1 1501 265 277 0 37 chr9 120061969 120062130 -4014042 + (CACAC)n Simple_repeat Simple_repeat 5 159 0 1 1501 794 244 53 14 chr9 120062301 120062509 -4013663 - B3 SINE B2 0 216 1 1 1501 226 263 150 10 chr9 120063460 120063560 -4012612 - RSINE1 SINE B4 -51 114 1 1 1501 207 182 0 0 chr9 120064004 120064037 -4012135 + polypyrimidine Low_complexity Low_complexity 3 35 0 1 1501 913 164 0 0 chr9 120064040 120064180 -4011992 - B1_Mur2 SINE Alu -8 141 2 1 1501 1300 238 28 22 chr9 120065519 120065837 -4010335 - MTEa LTR MaLR -29 350 31 1 1501 1000 180 138 0 chr9 120066040 120066195 -4009977 + B3 SINE B2 1 180 -36 1 1501 447 19 0 0 chr9 120066195 120066247 -4009925 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1501 1000 180 138 0 chr9 120066247 120066280 -4009892 + B3 SINE B2 181 214 -2 1 1501 183 117 0 77 chr9 120067295 120067360 -4008812 + (CCCTG)n Simple_repeat Simple_repeat 1 60 0 1 1501 403 313 17 81 chr9 120067514 120067688 -4008484 + RSINE1 SINE B4 3 165 0 1 1501 2199 104 6 12 chr9 120068904 120069225 -4006947 - ORR1A2 LTR MaLR -8 319 1 1 1501 911 254 9 59 chr9 120069388 120069610 -4006562 - MTE2a LTR MaLR -2 377 167 1 1501 264 120 0 0 chr9 120069612 120069662 -4006510 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1501 809 173 0 15 chr9 120069669 120069804 -4006368 - B1_Mur2 SINE Alu -7 142 10 1 1501 317 311 48 10 chr9 120069799 120069903 -4006269 - MTE2a LTR MaLR -183 196 89 1 1501 335 236 27 14 chr9 120069902 120069975 -4006197 - MTE2a LTR MaLR -249 130 57 1 1501 305 306 89 0 chr9 120070080 120070204 -4005968 - L1MC LINE L1 -1278 4868 4734 1 1501 548 250 123 17 chr9 120070573 120070752 -4005420 - B3 SINE B2 -17 199 2 1 1501 1121 192 5 32 chr9 120070943 120071164 -4005008 - B3 SINE B2 0 216 2 1 1501 202 194 0 0 chr9 120071184 120071220 -4004952 + CT-rich Low_complexity Low_complexity 2 37 0 1 1501 234 303 15 0 chr9 120071262 120071328 -4004844 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1501 493 264 141 98 chr9 120071330 120071607 -4004565 - B4 SINE B4 -2 290 2 1 1501 22 35 0 0 chr9 120071776 120071805 -4004367 + AT_rich Low_complexity Low_complexity 1 29 0 1 1501 353 272 131 41 chr9 120071819 120072087 -4004085 - B4 SINE B4 0 292 1 1 1501 513 239 209 33 chr9 120072262 120072444 -4003728 + B3 SINE B2 3 216 0 1 1501 22 0 0 0 chr9 120072444 120072466 -4003706 + AT_rich Low_complexity Low_complexity 1 22 0 1 1501 499 261 17 9 chr9 120072749 120072865 -4003307 - ID_B1 SINE B4 -4 220 104 1 1501 1119 251 109 57 chr9 120073963 120074331 -4001841 - MTD LTR MaLR -15 404 18 1 1501 543 280 62 45 chr9 120074822 120075046 -4001126 + B4 SINE B4 1 228 -64 1 1501 941 193 78 70 chr9 120075187 120075443 -4000729 - RMER12 LTR ERVK -107 1215 958 1 1501 1319 86 32 11 chr9 120075463 120075652 -4000520 - B2_Mm2 SINE B2 -2 193 1 1 1501 1929 235 97 73 chr9 120075656 120076692 -3999480 - RMER12 LTR ERVK -396 1008 1 1 1501 333 0 0 0 chr9 120076706 120076743 -3999429 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1501 477 0 0 0 chr9 120076743 120076795 -3999377 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1501 625 279 126 45 chr9 120077479 120077808 -3998364 + LTR33A LTR ERVL 229 776 -19 1 1501 507 326 0 0 chr9 120078356 120078503 -3997669 - B1F SINE Alu 0 149 3 1 1501 183 205 0 0 chr9 120078511 120078550 -3997622 + CT-rich Low_complexity Low_complexity 1 39 0 1 1501 407 157 83 12 chr9 120078577 120078661 -3997511 - L1MC1 LINE L1 -7 6326 6237 1 1501 381 316 110 30 chr9 120079744 120079978 -3996194 - L1MD LINE L1 -1759 4387 4141 1 1501 975 147 0 13 chr9 120081052 120081204 -3994968 - B2_Mm2 SINE B2 -44 151 2 1 1501 1392 237 23 10 chr9 120081205 120081508 -3994664 - MTEa LTR MaLR -60 319 13 1 1501 449 194 20 51 chr9 120081501 120081599 -3994573 + MTE2b LTR MaLR 165 259 -120 1 1501 233 0 62 0 chr9 120081836 120081868 -3994304 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1501 635 221 110 0 chr9 120081894 120082030 -3994142 + B3 SINE B2 16 166 -50 1 1501 798 81 0 0 chr9 120082030 120082154 -3994018 + (CA)n Simple_repeat Simple_repeat 1 124 0 1 1501 453 265 94 25 chr9 120082154 120082176 -3993996 + B2_Mm1a SINE B2 165 185 -8 2 1501 287 191 0 14 chr9 120083404 120083473 -3992699 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1501 538 135 9 9 chr9 120084208 120084313 -3991859 + (CA)n Simple_repeat Simple_repeat 2 106 0 2 1501 647 303 62 33 chr9 120084404 120084677 -3991495 + B4A SINE B4 3 283 -9 2 1501 415 51 63 0 chr9 120084692 120084771 -3991401 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1501 257 250 243 59 chr9 120085080 120085216 -3990956 + L2c LINE L2 3266 3426 0 2 1501 405 224 71 10 chr9 120085863 120085962 -3990210 - RSINE1 SINE B4 0 165 61 2 1501 691 292 86 141 chr9 120086519 120086821 -3989351 + MTE2a LTR MaLR 18 321 -58 2 1501 1188 135 38 0 chr9 120086821 120087006 -3989166 - B2_Mm2 SINE B2 -3 192 1 2 1501 691 292 86 141 chr9 120087006 120087086 -3989086 + MTE2a LTR MaLR 322 379 0 2 1501 228 289 160 30 chr9 120087096 120087196 -3988976 + MIRc SINE MIR 91 203 -65 2 1501 357 216 0 0 chr9 120087758 120087846 -3988326 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1501 512 298 19 6 chr9 120087846 120088005 -3988167 - RSINE1 SINE B4 0 165 5 2 1501 394 391 57 23 chr9 120088430 120088692 -3987480 - L1MDa LINE L1 -4754 1879 1609 2 1501 403 354 93 51 chr9 120088724 120089153 -3987019 + L1ME4a LINE L1 5471 5917 -207 2 1501 1092 171 50 0 chr9 120090961 120091160 -3985012 + B3 SINE B2 2 210 -6 2 1501 1173 62 14 0 chr9 120091182 120091328 -3984844 + B1_Mus1 SINE Alu 1 148 0 2 1501 180 0 0 0 chr9 120091328 120091348 -3984824 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1501 546 179 32 0 chr9 120091458 120091553 -3984619 - B1_Mur1 SINE Alu -4 145 48 2 1501 279 54 0 0 chr9 120091671 120091708 -3984464 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 1501 1035 95 7 0 chr9 120091708 120091845 -3984327 - B1_Mm SINE Alu -9 138 1 2 1501 1287 58 23 12 chr9 120091845 120092017 -3984155 - B2_Mm2 SINE B2 -19 176 2 2 1501 238 196 10 10 chr9 120092318 120092421 -3983751 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 1501 561 199 0 0 chr9 120092436 120092612 -3983560 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1501 212 342 63 48 chr9 120092667 120092873 -3983299 - B3 SINE B2 -6 210 2 2 1501 615 252 63 25 chr9 120092716 120092875 -3983297 - RSINE1 SINE B4 0 165 1 2 1501 450 233 0 0 chr9 120093223 120093309 -3982863 - PB1D10 SINE Alu -11 106 21 2 1501 1019 201 34 0 chr9 120094609 120094813 -3981359 - B3 SINE B2 -5 211 1 2 1501 207 0 0 0 chr9 120095715 120095738 -3980434 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1501 1257 21 7 0 chr9 120095750 120095895 -3980277 + B1_Mus2 SINE Alu 2 147 0 2 1501 252 79 0 73 chr9 120095895 120095963 -3980209 + A-rich Low_complexity Low_complexity 6 68 0 2 1501 329 179 90 45 chr9 120096290 120096401 -3979771 - Lx7 LINE L1 -15 7681 7566 2 1501 425 179 59 78 chr9 120096540 120096685 -3979487 + Lx7 LINE L1 5710 5866 -1830 2 1501 2860 268 72 19 chr9 120096666 120097569 -3978603 + Lx7 LINE L1 6263 7213 -483 2 1501 4038 186 308 5 chr9 120097567 120098779 -3977393 - Lx6 LINE L1 -1560 5900 4320 2 1501 396 332 96 55 chr9 120098869 120099062 -3977110 - MLT2B1 LTR ERVL -4 516 317 2 1501 3151 70 2 2 chr9 120099062 120099462 -3976710 + MTB LTR MaLR 1 400 0 2 1501 396 332 96 55 chr9 120099462 120099539 -3976633 - MLT2B1 LTR ERVL -204 316 235 2 1501 855 304 140 27 chr9 120099885 120100376 -3975796 - Lx8 LINE L1 -6 7467 6910 2 1501 735 22 0 0 chr9 120100376 120100465 -3975707 + (TC)n Simple_repeat Simple_repeat 1 89 0 2 1501 855 304 140 27 chr9 120100465 120100608 -3975564 - Lx8 LINE L1 -564 6909 6761 2 1501 395 281 31 61 chr9 120101416 120101579 -3974593 + B4 SINE B4 15 172 -120 2 1501 434 258 19 101 chr9 120102379 120102646 -3973526 + RLTR21 LTR ERVK 1075 1319 -253 2 1501 479 256 0 11 chr9 120102657 120102839 -3973333 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 1501 660 246 8 0 chr9 120103396 120103530 -3972642 + ID_B1 SINE B4 90 224 0 2 1501 402 215 0 12 chr9 120103541 120103621 -3972551 + ID4 SINE ID 2 80 -3 2 1501 1067 89 19 0 chr9 120103685 120103900 -3972272 + (TG)n Simple_repeat Simple_repeat 1 219 0 2 1501 375 23 0 0 chr9 120103900 120103943 -3972229 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1501 441 236 57 0 chr9 120104082 120104188 -3971984 - ID_B1 SINE B4 0 224 113 2 1501 1180 240 16 31 chr9 120104667 120104921 -3971251 - B4A SINE B4 -21 271 22 2 1501 252 0 0 0 chr9 120105121 120105149 -3971023 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1501 580 307 97 0 chr9 120105156 120105394 -3970778 + MTE2b LTR MaLR 119 379 0 2 1501 351 89 54 0 chr9 120105975 120106031 -3970141 - MLT1A1 LTR MaLR -4 404 346 2 1501 571 265 7 13 chr9 120106215 120106368 -3969804 + RMER15 LTR ERVL 286 437 -138 2 1501 1183 196 75 11 chr9 120106364 120106632 -3969540 - ORR1D1 LTR MaLR -11 363 79 2 1501 343 188 14 55 chr9 120106775 120106848 -3969324 - ORR1D1 LTR MaLR -304 70 1 2 1501 253 189 94 0 chr9 120106851 120106904 -3969268 + RMER15 LTR ERVL 515 572 -3 2 1501 599 272 40 155 chr9 120106946 120107198 -3968974 + B4 SINE B4 69 291 -1 2 1501 246 249 6 50 chr9 120107229 120107411 -3968761 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1501 457 289 8 38 chr9 120108472 120108605 -3967567 - RSINE1 SINE B4 -31 134 6 2 1501 672 278 41 23 chr9 120108609 120108830 -3967342 - B4A SINE B4 -65 227 3 2 1501 23 0 0 0 chr9 120108931 120108954 -3967218 + AT_rich Low_complexity Low_complexity 1 23 0 2 1501 466 294 57 38 chr9 120108956 120109115 -3967057 - RSINE1 SINE B4 -2 163 2 2 1501 1020 107 20 0 chr9 120109240 120109389 -3966783 - B2_Mm1t SINE B2 -18 175 24 2 1501 460 174 43 21 chr9 120110287 120110381 -3965791 + PB1D10 SINE Alu 22 117 0 2 1501 23 33 0 0 chr9 120110408 120110438 -3965734 + AT_rich Low_complexity Low_complexity 1 30 0 2 1501 268 74 36 36 chr9 120110463 120110519 -3965653 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 2 1501 365 241 259 41 chr9 120110519 120110666 -3965506 - B3A SINE B2 -18 180 2 2 1501 453 256 132 0 chr9 120111232 120111353 -3964819 + RSINE1 SINE B4 3 139 -26 2 1501 426 259 0 43 chr9 120111958 120112075 -3964097 + B3A SINE B2 52 163 -35 2 1501 514 287 70 46 chr9 120112490 120112775 -3963397 + B4A SINE B4 1 292 0 2 1501 874 288 27 60 chr9 120113924 120114030 -3962142 - B4 SINE B4 0 292 197 2 1501 1728 221 8 32 chr9 120114030 120114409 -3961763 - ORR1D2 LTR MaLR 0 370 1 2 1501 874 288 27 60 chr9 120114409 120114601 -3961571 - B4 SINE B4 -96 196 4 2 1501 641 265 11 23 chr9 120114629 120114803 -3961369 + RCHARR1 DNA MER1_type 404 575 -399 2 1501 509 282 173 65 chr9 120114895 120115067 -3961105 - RCHARR1 DNA MER1_type -697 277 69 2 1501 306 0 0 0 chr9 120115067 120115101 -3961071 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2 1501 1032 91 8 0 chr9 120115102 120115234 -3960938 - B1_Mus2 SINE Alu -14 133 1 2 1501 509 282 173 65 chr9 120115234 120115290 -3960882 - RCHARR1 DNA MER1_type -906 68 22 2 1501 1776 169 107 9 chr9 120115273 120115619 -3960553 + MTD LTR MaLR 40 419 0 2 1501 597 232 69 21 chr9 120115650 120115795 -3960377 - RSINE1 SINE B4 -10 155 4 2 1501 239 304 46 43 chr9 120116514 120116618 -3959554 - L2b LINE L2 -42 3384 3241 2 1501 412 287 17 133 chr9 120116741 120116799 -3959373 - MER3 DNA MER1_type -1 208 156 2 1501 589 217 144 16 chr9 120116799 120116986 -3959186 + B3 SINE B2 1 211 -5 2 1501 412 287 17 133 chr9 120116986 120117160 -3959012 - MER3 DNA MER1_type -54 155 3 2 1501 497 279 100 13 chr9 120117248 120117477 -3958695 - MLT2B4 LTR ERVL -62 494 246 2 1501 620 277 41 46 chr9 120117656 120117853 -3958319 - B3A SINE B2 0 198 3 2 1501 187 89 0 82 chr9 120117967 120118016 -3958156 + (CAGAGA)n Simple_repeat Simple_repeat 3 47 0 2 1501 349 271 50 8 chr9 120118194 120118313 -3957859 + B4 SINE B4 2 125 -167 2 1501 279 144 16 71 chr9 120118445 120118572 -3957600 + (CA)n Simple_repeat Simple_repeat 1 120 0 2 1501 442 141 16 68 chr9 120118591 120118781 -3957391 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1501 290 261 86 75 chr9 120118913 120119087 -3957085 - MTEb LTR MaLR -33 346 171 2 1501 842 30 0 0 chr9 120119130 120119231 -3956941 + B1_Mus1 SINE Alu 40 140 -8 2 1501 247 35 88 0 chr9 120119231 120119288 -3956884 + (CAA)n Simple_repeat Simple_repeat 2 63 0 2 1501 487 222 18 53 chr9 120119297 120119411 -3956761 - B3 SINE B2 -6 210 101 2 1501 243 0 0 0 chr9 120119721 120119748 -3956424 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1501 1342 223 120 8 chr9 120120391 120120748 -3955424 - MTD LTR MaLR -2 417 21 2 1501 478 99 11 11 chr9 120120749 120120841 -3955331 + (CA)n Simple_repeat Simple_repeat 2 93 0 2 1501 656 226 15 0 chr9 120120932 120121007 -3955165 + ID SINE ID 5 81 -143 2 1501 379 245 0 64 chr9 120121007 120121116 -3955056 + PB1D7 SINE Alu 1 102 -18 2 1501 828 80 0 0 chr9 120121310 120121423 -3954749 + (TCCC)n Simple_repeat Simple_repeat 2 114 0 2 1501 549 295 16 0 chr9 120121436 120121565 -3954607 - ID_B1 SINE B4 -12 212 82 2 1501 921 202 78 0 chr9 120121606 120121799 -3954373 - ID_B1 SINE B4 -15 209 2 2 1501 334 231 0 103 chr9 120121883 120121970 -3954202 - ID4_ SINE ID -1 82 5 2 1501 312 175 0 0 chr9 120122465 120122528 -3953644 + (CAT)n Simple_repeat Simple_repeat 2 64 0 2 1501 22 56 0 0 chr9 120122813 120122849 -3953323 + AT_rich Low_complexity Low_complexity 1 36 0 2 1501 234 159 23 0 chr9 120123102 120123146 -3953026 + MTD LTR MaLR 359 403 -16 2 1501 857 202 105 16 chr9 120123156 120123347 -3952825 + B3 SINE B2 1 208 -8 2 1501 267 167 18 18 chr9 120123576 120123631 -3952541 + B3 SINE B2 3 57 -159 2 1501 1573 149 152 3 chr9 120124529 120124839 -3951333 - MTD LTR MaLR -63 356 1 2 1501 371 209 203 118 chr9 120125308 120125478 -3950694 + ORR1E LTR MaLR 1 191 -168 2 1501 666 219 15 15 chr9 120125478 120125821 -3950351 + CT-rich Low_complexity Low_complexity 1 343 0 3 1501 705 231 74 57 chr9 120125822 120126018 -3950154 + ORR1E LTR MaLR 150 366 -4 2 1501 759 241 21 21 chr9 120126215 120126406 -3949766 - B3A SINE B2 0 198 8 3 1501 302 229 135 115 chr9 120126627 120126775 -3949397 + L1M5 LINE L1 3737 3887 -2259 3 1501 572 135 33 13 chr9 120126936 120127086 -3949086 + (TG)n Simple_repeat Simple_repeat 1 153 0 3 1501 214 148 37 0 chr9 120127156 120127210 -3948962 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1501 569 215 138 109 chr9 120127210 120127486 -3948686 - B4A SINE B4 0 292 9 3 1501 21 0 0 0 chr9 120127744 120127765 -3948407 + AT_rich Low_complexity Low_complexity 1 21 0 3 1501 353 254 159 18 chr9 120127793 120127967 -3948205 - MLT1E1A LTR MaLR -9 671 434 3 1501 288 237 0 22 chr9 120127985 120128119 -3948053 + (TG)n Simple_repeat Simple_repeat 1 131 0 3 1501 576 238 2 0 chr9 120128151 120128640 -3947532 + (TG)n Simple_repeat Simple_repeat 1 490 0 3 1501 488 240 0 7 chr9 120129606 120129880 -3946292 + (TG)n Simple_repeat Simple_repeat 1 271 0 3 1501 1356 245 114 16 chr9 120129944 120130322 -3945850 - MTD LTR MaLR -4 415 1 3 1501 575 284 26 84 chr9 120130322 120130545 -3945627 - B4 SINE B4 -82 210 1 3 1501 748 296 58 85 chr9 120130701 120131030 -3945142 + ORR1E LTR MaLR 3 322 -37 3 1501 450 154 28 19 chr9 120132456 120132562 -3943610 + CT-rich Low_complexity Low_complexity 2 108 0 3 1501 2517 89 3 0 chr9 120132740 120133066 -3943106 + ORR1A2 LTR MaLR 1 327 0 3 1501 672 208 17 0 chr9 120134910 120135030 -3941142 + B3A SINE B2 30 151 -47 3 1501 345 125 0 0 chr9 120135032 120135088 -3941084 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1501 743 209 4 0 chr9 120136047 120136277 -3939895 + GA-rich Low_complexity Low_complexity 1 230 0 3 1501 1150 88 0 0 chr9 120136430 120136577 -3939595 + B1_Mus1 SINE Alu 2 148 0 3 1501 214 82 20 39 chr9 120136585 120136636 -3939536 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 1501 893 273 75 42 chr9 120136761 120137156 -3939016 - MTE2a LTR MaLR 0 419 1 3 1501 312 94 0 0 chr9 120137572 120137625 -3938547 + (A)n Simple_repeat Simple_repeat 1 53 0 3 1501 906 258 45 41 chr9 120137743 120138034 -3938138 - B4A SINE B4 0 292 1 3 1501 898 262 14 14 chr9 120138362 120138575 -3937597 - B3 SINE B2 -3 213 1 3 1501 252 86 0 0 chr9 120138582 120138617 -3937555 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 3 1501 310 295 135 14 chr9 120138619 120138747 -3937425 - HAL1-3A_ME LINE L1 -420 2438 2293 3 1501 1233 35 0 0 chr9 120138747 120138890 -3937282 - B1_Mus1 SINE Alu -1 147 5 3 1501 310 295 135 14 chr9 120138890 120138902 -3937270 - HAL1-3A_ME LINE L1 -566 2292 2281 3 1501 276 3 45 12 chr9 120139029 120139073 -3937099 + B1_Mm SINE Alu 108 150 0 3 1501 966 188 51 15 chr9 120139249 120139444 -3936728 - B3 SINE B2 -1 215 14 3 1501 678 272 7 0 chr9 120139455 120139602 -3936570 - B1F SINE Alu -1 148 1 3 1501 856 270 23 23 chr9 120140124 120140305 -3935867 + B3 SINE B2 1 185 -31 3 1501 333 0 0 0 chr9 120140305 120140342 -3935830 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1501 856 270 23 23 chr9 120140342 120140376 -3935796 + B3 SINE B2 186 216 0 3 1501 436 277 88 18 chr9 120140400 120140514 -3935658 + RSINE1 SINE B4 9 130 -35 3 1501 431 269 36 36 chr9 120141318 120141457 -3934715 + LTR33A_ LTR ERVL 363 501 -30 3 1501 265 329 82 16 chr9 120141613 120141843 -3934329 + MLT1J LTR MaLR 41 291 -221 3 1501 277 232 38 26 chr9 120142132 120142245 -3933927 - B1_Mur1 SINE Alu 0 149 45 3 1501 1148 255 111 3 chr9 120142498 120142840 -3933332 + MTEa LTR MaLR 1 379 0 3 1501 21 0 0 0 chr9 120143272 120143293 -3932879 + AT_rich Low_complexity Low_complexity 1 21 0 3 1501 476 16 0 16 chr9 120143307 120143369 -3932803 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1501 486 0 0 0 chr9 120143777 120143831 -3932341 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1501 338 268 53 68 chr9 120143874 120143896 -3932276 - HAL1-3A_ME LINE L1 -444 2414 2394 3 1501 1149 115 15 40 chr9 120143896 120144095 -3932077 - B2_Mm2 SINE B2 -1 194 1 3 1501 338 268 53 68 chr9 120144095 120144204 -3931968 - HAL1-3A_ME LINE L1 -465 2393 2285 3 1501 963 42 0 0 chr9 120144443 120144562 -3931610 - B1_Mus2 SINE Alu 0 147 29 3 1501 1222 224 114 33 chr9 120145425 120145758 -3930414 + RMER4B LTR ERVK 108 467 -118 3 1501 261 174 28 28 chr9 120146595 120146666 -3929506 + GA-rich Low_complexity Low_complexity 4 74 0 3 1501 209 250 24 8 chr9 120146682 120146807 -3929365 + GA-rich Low_complexity Low_complexity 3 129 0 3 1501 302 240 20 30 chr9 120146818 120146917 -3929255 + GA-rich Low_complexity Low_complexity 5 102 0 3 1501 1536 50 0 0 chr9 120146965 120147521 -3928651 + (TGGA)n Simple_repeat Simple_repeat 1 556 0 3 1501 2364 104 6 0 chr9 120147553 120147870 -3928302 - ORR1A2 LTR MaLR -8 319 1 3 1501 534 154 7 40 chr9 120148827 120148976 -3927196 + CT-rich Low_complexity Low_complexity 3 146 0 3 1501 299 180 82 0 chr9 120149016 120149077 -3927095 + MTEa LTR MaLR 314 379 0 3 1501 852 304 71 54 chr9 120149109 120149550 -3926622 - MLT1E3 LTR MaLR -32 592 174 3 1501 1114 223 111 64 chr9 120149626 120149991 -3926181 + MTE2a LTR MaLR 34 419 0 3 1501 534 252 13 20 chr9 120150756 120150906 -3925266 + MTD LTR MaLR 19 167 -252 3 1501 863 169 14 14 chr9 120150906 120151190 -3924982 + (CAGAGA)n Simple_repeat Simple_repeat 1 284 0 3 1501 233 197 0 15 chr9 120151197 120151264 -3924908 + GA-rich Low_complexity Low_complexity 2 67 0 3 1501 440 362 0 11 chr9 120152107 120152283 -3923889 + (TG)n Simple_repeat Simple_repeat 1 174 0 3 1501 746 293 58 18 chr9 120152307 120152585 -3923587 - B4A SINE B4 -2 290 2 3 1501 863 87 0 8 chr9 120152997 120153124 -3923048 + (CATTG)n Simple_repeat Simple_repeat 3 128 0 3 1501 1108 196 11 0 chr9 120153127 120153316 -3922856 - B3 SINE B2 -25 191 1 3 1501 1040 248 90 52 chr9 120153338 120153502 -3922670 - Lx8 LINE L1 -3 7470 7291 3 1501 1094 237 71 66 chr9 120153502 120153868 -3922304 - RLTR9A LTR ERVK 0 368 1 3 1501 1040 248 90 52 chr9 120153868 120154048 -3922124 - Lx8 LINE L1 -183 7290 7113 3 1501 460 232 15 77 chr9 120154700 120154846 -3921326 + B3A SINE B2 70 215 -1 3 1501 2811 103 0 5 chr9 120154849 120155276 -3920896 - L1_Mm LINE L1 -433 5450 5026 3 1501 3513 40 5 7 chr9 120155276 120155699 -3920473 + L1_Mus1 LINE L1 6146 6567 0 3 1501 26 30 0 0 chr9 120155700 120155733 -3920439 + AT_rich Low_complexity Low_complexity 1 33 0 3 1501 599 332 50 14 chr9 120157018 120157238 -3918934 + MTD LTR MaLR 6 233 -186 3 1501 5149 140 48 14 chr9 120157283 120158115 -3918057 - RMER13A LTR ERVK 0 860 1 3 1501 2444 156 37 5 chr9 120158369 120158774 -3917398 - MTC LTR MaLR -3 418 1 3 1501 1435 88 16 0 chr9 120159013 120159205 -3916967 - B2_Mm2 SINE B2 0 195 1 3 1501 1412 241 22 55 chr9 120160022 120160387 -3915785 - ORR1E LTR MaLR -6 353 1 3 1501 781 256 107 5 chr9 120160519 120160743 -3915429 + ORR1E LTR MaLR 8 254 -105 3 1501 471 296 75 6 chr9 120161221 120161394 -3914778 + B2_Mm2 SINE B2 1 185 -10 3 1501 400 302 25 0 chr9 120161970 120162129 -3914043 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 1501 247 269 27 0 chr9 120162166 120162315 -3913857 + (CATATA)n Simple_repeat Simple_repeat 6 158 0 3 1501 1130 189 14 19 chr9 120162493 120162703 -3913469 - B3 SINE B2 -6 210 2 3 1501 1011 238 190 6 chr9 120163025 120163346 -3912826 + MTD LTR MaLR 1 380 -39 3 1501 1808 272 158 52 chr9 120163368 120163464 -3912708 + MTC-int LTR MaLR 1 93 -1165 3 1501 1847 159 44 78 chr9 120163464 120163654 -3912518 - ORR1D1 LTR MaLR -2 372 177 3 1501 528 45 0 0 chr9 120163654 120163721 -3912451 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 3 1501 1847 159 44 78 chr9 120163721 120163913 -3912259 - ORR1D1 LTR MaLR -198 176 3 3 1501 1808 272 158 52 chr9 120163913 120164590 -3911582 + MTC-int LTR MaLR 94 856 -402 3 1501 1928 232 44 52 chr9 120164878 120165396 -3910776 + RMER19C LTR ERVK 98 611 0 3 1501 1153 75 11 0 chr9 120165554 120165728 -3910444 + (TG)n Simple_repeat Simple_repeat 2 177 0 3 1501 535 230 99 26 chr9 120165730 120165882 -3910290 - RSINE1 SINE B4 0 165 3 3 1501 831 179 110 128 chr9 120165982 120166140 -3910032 - B3 SINE B2 -1 215 37 3 1501 5820 137 3 6 chr9 120166140 120167014 -3909158 + Lx LINE L1 5779 6650 -4 3 1501 393 22 0 0 chr9 120167017 120167063 -3909109 + (CTAA)n Simple_repeat Simple_repeat 3 48 0 3 1501 727 174 120 140 chr9 120167063 120167118 -3909054 - B3 SINE B2 -180 36 2 3 1501 269 314 126 70 chr9 120167192 120167391 -3908781 - MLT1F-int LTR MaLR -336 1153 944 3 1501 272 303 0 0 chr9 120168107 120168173 -3907999 + LTR16A1 LTR ERVL 26 91 -365 3 1501 1343 201 147 9 chr9 120168564 120168911 -3907261 - MTD LTR MaLR 0 419 25 3 1501 288 331 87 13 chr9 120169383 120169533 -3906639 - Charlie24 DNA MER1_type -2268 182 22 3 1501 2145 165 58 18 chr9 120170153 120170547 -3905625 + MTC LTR MaLR 4 413 -8 3 1501 229 350 63 27 chr9 120170579 120170802 -3905370 - RMER17C LTR ERVK -89 321 91 3 1501 393 106 93 12 chr9 120170833 120170995 -3905177 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 3 1501 232 102 41 0 chr9 120171455 120171504 -3904668 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 3 1501 3687 213 13 10 chr9 120171652 120172419 -3903753 + Lx5 LINE L1 6277 7045 -5 3 1501 432 289 18 54 chr9 120172450 120172618 -3903554 + RSINE1 SINE B4 2 163 -2 3 1501 27 0 0 0 chr9 120172635 120172662 -3903510 + AT_rich Low_complexity Low_complexity 1 27 0 3 1501 713 123 8 0 chr9 120172934 120173056 -3903116 - Lx LINE L1 -5 6649 6527 3 1501 240 167 0 0 chr9 120174116 120174164 -3902008 + (TCTG)n Simple_repeat Simple_repeat 4 51 0 3 1501 2097 44 0 53 chr9 120174169 120174454 -3901718 - LTRIS_Mm LTR ERV1 0 482 213 3 1501 4447 14 4 0 chr9 120174454 120174945 -3901227 + MT2_Mm LTR ERVL 1 493 0 3 1501 41437 16 14 0 chr9 120174945 120180232 -3895940 + MERVL-int LTR ERVL 1 5360 -125 3 1501 403 167 46 35 chr9 120180232 120180319 -3895853 + ORR1A3-int LTR MaLR 553 640 -1323 3 1501 319 0 0 0 chr9 120180319 120180357 -3895815 + MERVL-int LTR ERVL 5448 5485 0 3 1501 4447 14 4 0 chr9 120180357 120180848 -3895324 + MT2_Mm LTR ERVL 1 493 0 3 1501 2726 37 0 0 chr9 120180848 120181171 -3895001 - LTRIS_Mus LTR ERV1 -264 323 1 4 1501 292 106 0 78 chr9 120181200 120181302 -3894870 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1501 220 121 7 120 chr9 120181374 120181524 -3894648 + (CA)n Simple_repeat Simple_repeat 1 133 0 4 1501 25 0 0 0 chr9 120181635 120181660 -3894512 + AT_rich Low_complexity Low_complexity 1 25 0 4 1501 520 326 123 64 chr9 120181723 120182267 -3893905 + MLT2E LTR ERVL 36 611 -17 4 1501 225 0 0 0 chr9 120183091 120183116 -3893056 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1501 342 194 0 0 chr9 120183308 120183380 -3892792 + CT-rich Low_complexity Low_complexity 2 73 0 4 1501 261 0 0 0 chr9 120183764 120183793 -3892379 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 4 1501 218 179 0 25 chr9 120183793 120183833 -3892339 + C-rich Low_complexity Low_complexity 6 44 0 4 1501 237 59 19 56 chr9 120184150 120184204 -3891968 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 4 1501 244 283 22 104 chr9 120184232 120184366 -3891806 - B4A SINE B4 -127 165 43 4 1501 318 274 66 41 chr9 120184425 120184547 -3891625 - ID_B1 SINE B4 -20 204 80 4 1501 229 340 27 9 chr9 120184569 120184679 -3891493 + MER5B DNA MER1_type 64 175 -3 4 1501 190 195 98 0 chr9 120185175 120185216 -3890956 + L2c LINE L2 3104 3148 -239 4 1501 407 206 75 47 chr9 120185390 120185497 -3890675 + PB1D10 SINE Alu 3 112 -5 4 1501 25 0 0 0 chr9 120185528 120185553 -3890619 + AT_rich Low_complexity Low_complexity 1 25 0 4 1501 365 298 63 100 chr9 120185653 120185843 -3890329 - B4 SINE B4 -76 216 34 4 1501 313 246 29 0 chr9 120186225 120186294 -3889878 - RMER30 DNA MER1_type 0 202 132 4 1501 438 285 0 0 chr9 120186296 120186447 -3889725 + (TG)n Simple_repeat Simple_repeat 1 151 0 4 1501 365 240 0 11 chr9 120186462 120186643 -3889529 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1501 598 186 0 27 chr9 120186658 120186881 -3889291 + (TG)n Simple_repeat Simple_repeat 1 216 0 4 1501 687 312 17 6 chr9 120186882 120187056 -3889116 - B3A SINE B2 -16 182 7 4 1501 2175 184 93 23 chr9 120187077 120187550 -3888622 - RMER20A LTR ERVK 0 516 11 4 1501 1750 211 67 48 chr9 120188041 120188545 -3887627 + RMER4B LTR ERVK 1 588 -23 4 1501 358 301 93 52 chr9 120188625 120188797 -3887375 + B4A SINE B4 114 292 0 4 1501 2362 94 3 0 chr9 120188898 120189216 -3886956 - ORR1A2 LTR MaLR -8 319 1 4 1501 207 0 0 0 chr9 120189458 120189481 -3886691 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1501 1276 20 0 7 chr9 120189483 120189631 -3886541 - B1_Mm SINE Alu 0 147 1 4 1501 657 346 79 3 chr9 120189823 120190191 -3885981 - Lx8 LINE L1 -247 7226 6831 4 1501 252 0 0 0 chr9 120190817 120190845 -3885327 + (CAAAC)n Simple_repeat Simple_repeat 4 31 0 4 1501 317 330 11 11 chr9 120191222 120191311 -3884861 - MTEa LTR MaLR -266 113 25 4 1501 433 125 14 0 chr9 120191331 120191403 -3884769 - URR1B DNA MER1_type -12 213 141 4 1501 189 0 0 0 chr9 120192516 120192537 -3883635 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1501 215 355 8 47 chr9 120192538 120192665 -3883507 + B1_Mur3 SINE Alu 2 123 -26 4 1501 207 0 0 0 chr9 120192928 120192951 -3883221 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1502 279 0 0 0 chr9 120193180 120193211 -3882961 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 4 1502 970 242 22 140 chr9 120193317 120193910 -3882262 - RLTR11B LTR ERVK -17 551 10 4 1502 245 182 0 43 chr9 120193923 120193969 -3882203 - MTEa LTR MaLR -17 362 319 4 1502 806 182 109 67 chr9 120193967 120194132 -3882040 + B3 SINE B2 15 186 -9 4 1502 1025 249 67 61 chr9 120194127 120194456 -3881716 - MTEa LTR MaLR -42 337 7 4 1502 3614 60 16 41 chr9 120194827 120195314 -3880858 - MT2C_Mm LTR ERVL 0 475 1 4 1502 23 33 0 0 chr9 120195513 120195543 -3880629 + AT_rich Low_complexity Low_complexity 1 30 0 4 1502 255 61 0 0 chr9 120195543 120195576 -3880596 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1502 524 203 227 19 chr9 120195633 120195849 -3880323 + Lx8 LINE L1 7204 7464 -9 4 1502 341 350 42 98 chr9 120196484 120196984 -3879188 - L1M3e LINE L1 -6159 871 400 4 1502 469 234 36 0 chr9 120197073 120197184 -3878988 + RMER3D-int LTR ERVK 1177 1291 -1551 4 1502 357 289 115 62 chr9 120197469 120197661 -3878511 - LTR78 LTR ERV1 -59 1245 1044 4 1502 441 0 0 0 chr9 120197718 120197767 -3878405 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1502 249 371 8 25 chr9 120197839 120197958 -3878214 + MER5A1 DNA MER1_type 1 117 -49 4 1502 571 201 60 34 chr9 120198101 120198250 -3877922 - MTEb LTR MaLR -10 369 217 4 1502 381 43 0 0 chr9 120198252 120198299 -3877873 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1502 412 164 14 14 chr9 120198310 120198384 -3877788 - MTEb LTR MaLR -293 86 13 4 1502 249 195 40 208 chr9 120198402 120198551 -3877621 - MTEb LTR MaLR -109 270 147 4 1502 261 0 0 0 chr9 120198631 120198660 -3877512 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1502 570 311 93 71 chr9 120198766 120198831 -3877341 - B4A SINE B4 -16 276 219 4 1502 651 189 72 7 chr9 120198831 120198970 -3877202 - B1_Mur2 SINE Alu -1 148 1 4 1502 570 311 93 71 chr9 120198970 120199129 -3877043 - B4A SINE B4 -74 218 47 4 1502 337 278 9 85 chr9 120199091 120199197 -3876975 + B4 SINE B4 188 285 -7 4 1502 338 74 0 18 chr9 120199201 120199256 -3876916 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1502 396 173 136 25 chr9 120199390 120199515 -3876657 - MLT2B4 LTR ERVL -375 145 1 4 1502 243 0 0 0 chr9 120199746 120199773 -3876399 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1502 1923 90 22 0 chr9 120199988 120200255 -3875917 - ORR1A2 LTR MaLR 0 327 55 4 1502 414 0 0 0 chr9 120200282 120200328 -3875844 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1502 500 236 125 0 chr9 120200331 120200475 -3875697 + RSINE1 SINE B4 4 165 0 4 1502 210 11 0 158 chr9 120201077 120201286 -3874886 + (CAGGG)n Simple_repeat Simple_repeat 5 180 0 4 1502 505 332 15 34 chr9 120202221 120202427 -3873745 - B4A SINE B4 -4 288 87 4 1502 220 289 150 30 chr9 120202686 120202786 -3873386 - L2a LINE L2 -18 3408 3297 4 1502 305 263 52 13 chr9 120202826 120202903 -3873269 + ID_B1 SINE B4 135 214 -10 4 1502 315 245 0 0 chr9 120203166 120203260 -3872912 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1502 609 287 0 3 chr9 120203261 120203662 -3872510 + (CA)n Simple_repeat Simple_repeat 1 399 0 4 1502 451 298 76 0 chr9 120204208 120204339 -3871833 - ID_B1 SINE B4 -2 222 82 4 1502 248 267 163 0 chr9 120204386 120204472 -3871700 - MTEa LTR MaLR -2 377 278 4 1502 435 19 0 0 chr9 120205191 120205243 -3870929 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 4 1502 599 323 139 18 chr9 120205317 120205648 -3870524 + LTR16A1 LTR ERVL 85 455 -1 4 1502 329 88 35 0 chr9 120206141 120206198 -3869974 + (TATG)n Simple_repeat Simple_repeat 4 62 0 4 1502 731 220 144 0 chr9 120206198 120206371 -3869801 - B3 SINE B2 -18 198 1 4 1502 892 225 103 82 chr9 120206465 120206549 -3869623 - B4 SINE B4 -4 288 215 4 1502 4208 63 87 2 chr9 120206549 120207104 -3869068 - L1_Mus3 LINE L1 0 6638 6037 4 1502 892 225 103 82 chr9 120207104 120207300 -3868872 - B4 SINE B4 -78 214 2 4 1502 819 282 60 37 chr9 120207306 120207633 -3868539 - L1MD LINE L1 -575 5667 5331 4 1502 309 51 0 0 chr9 120207633 120207672 -3868500 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1502 819 292 52 32 chr9 120207672 120207874 -3868298 - L1MD LINE L1 -816 5330 5129 4 1502 251 390 103 0 chr9 120208227 120208422 -3867750 - MIRc SINE MIR -42 226 12 4 1502 533 323 48 16 chr9 120208680 120208869 -3867303 - B3A SINE B2 -3 195 1 4 1502 297 0 0 0 chr9 120208958 120208991 -3867181 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 1502 702 282 32 28 chr9 120209447 120209722 -3866450 + Lx8 LINE L1 5600 5905 -1568 4 1502 490 225 12 0 chr9 120209731 120209904 -3866268 + (TG)n Simple_repeat Simple_repeat 1 175 0 4 1502 480 246 0 0 chr9 120209954 120210129 -3866043 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 1502 3395 50 2 0 chr9 120210408 120210807 -3865365 + MTB LTR MaLR 1 400 0 4 1502 2224 137 23 3 chr9 120210837 120211189 -3864983 - ORR1B2 LTR MaLR -8 359 1 4 1502 1021 187 59 0 chr9 120211307 120211510 -3864662 - B3 SINE B2 0 216 2 4 1502 638 233 101 10 chr9 120211567 120211728 -3864444 - MTE2a LTR MaLR -213 166 1 4 1502 183 141 31 15 chr9 120212946 120213011 -3863161 + C-rich Low_complexity Low_complexity 3 68 0 4 1502 192 125 0 0 chr9 120214504 120214536 -3861636 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 4 1502 182 37 0 36 chr9 120215116 120215144 -3861028 + (GGGTG)n Simple_repeat Simple_repeat 5 31 0 4 1502 1083 188 38 10 chr9 120215307 120215516 -3860656 + B3 SINE B2 2 216 0 4 1502 502 276 45 0 chr9 120215748 120215882 -3860290 - B1F SINE Alu -9 140 1 4 1502 1151 242 72 49 chr9 120216780 120216911 -3859261 - MTEb LTR MaLR -13 366 244 4 1502 3325 45 5 2 chr9 120216911 120217310 -3858862 - MTB LTR MaLR 0 400 1 4 1502 1151 242 72 49 chr9 120217310 120217525 -3858647 - MTEb LTR MaLR -136 243 12 4 1502 1066 118 123 6 chr9 120217655 120217826 -3858346 + B2_Mm2 SINE B2 2 192 -3 4 1502 1125 78 53 24 chr9 120217831 120217981 -3858191 + B2_Mm2 SINE B2 2 158 -37 4 1502 186 43 0 0 chr9 120217981 120218004 -3858168 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1502 1125 78 53 24 chr9 120218004 120218023 -3858149 + B2_Mm2 SINE B2 159 176 -19 4 1502 345 47 0 0 chr9 120218377 120218420 -3857752 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4 1502 1620 229 40 11 chr9 120218463 120218812 -3857360 - ORR1E LTR MaLR 0 359 1 4 1502 258 188 11 34 chr9 120218865 120218953 -3857219 + (TATG)n Simple_repeat Simple_repeat 1 86 0 4 1502 306 0 0 0 chr9 120218962 120218996 -3857176 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1502 402 314 80 80 chr9 120219022 120219261 -3856911 - B4A SINE B4 -11 281 43 4 1502 236 294 35 0 chr9 120220646 120220731 -3855441 - L1M4 LINE L1 -272 5912 5825 4 1502 1167 243 119 17 chr9 120220886 120221230 -3854942 - MTEa LTR MaLR 0 379 1 4 1502 384 136 0 0 chr9 120221849 120221908 -3854264 + B1_Mur4 SINE Alu 15 73 -77 5 1502 393 22 0 0 chr9 120222861 120222907 -3853265 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1502 474 316 20 108 chr9 120222935 120223130 -3853042 - B4A SINE B4 -113 179 2 5 1502 731 264 195 36 chr9 120223635 120223938 -3852234 + MTEb LTR MaLR 22 372 -7 5 1502 1531 180 145 27 chr9 120224119 120224450 -3851722 - ORR1D2 LTR MaLR 0 370 1 5 1502 745 289 160 63 chr9 120224824 120224994 -3851178 - L1MEg LINE L1 -2891 3255 3088 5 1502 387 283 19 0 chr9 120224994 120225100 -3851072 - PB1D10 SINE Alu -8 109 2 5 1502 745 289 160 63 chr9 120225100 120225405 -3850767 - L1MEg LINE L1 -3059 3087 2734 5 1502 822 253 126 55 chr9 120226401 120226836 -3849336 - Lx8 LINE L1 0 7473 7008 5 1502 772 228 53 43 chr9 120227308 120227496 -3848676 - MTEa LTR MaLR -5 374 185 5 1502 275 279 15 0 chr9 120227486 120227554 -3848618 - MTE-int LTR MaLR -378 1202 1134 5 1502 1145 247 95 23 chr9 120227554 120227902 -3848270 + MTEa-int LTR MaLR 1190 1562 -18 5 1502 1125 246 70 64 chr9 120227904 120228278 -3847894 + MTEa LTR MaLR 1 376 -3 5 1502 1226 252 65 4 chr9 120228379 120228658 -3847514 - Tigger7 DNA MER2_type -2188 303 8 5 1502 306 50 0 0 chr9 120228698 120228738 -3847434 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1502 331 342 65 57 chr9 120229159 120229407 -3846765 - L1MEg LINE L1 -4821 1421 1172 5 1502 227 98 24 24 chr9 120229590 120229632 -3846540 - ID_B1 SINE B4 -1 223 182 5 1502 564 269 87 0 chr9 120229699 120229848 -3846324 - RSINE1 SINE B4 -2 163 2 5 1502 238 273 130 43 chr9 120230327 120230442 -3845730 - Charlie5 DNA MER1_type -2496 128 4 5 1502 442 0 35 0 chr9 120232715 120232773 -3843399 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1502 903 254 70 8 chr9 120233020 120233236 -3842936 + B4 SINE B4 1 231 -61 5 1502 859 159 23 16 chr9 120233236 120233392 -3842780 + B3A SINE B2 1 141 -52 5 1502 321 346 88 12 chr9 120234542 120234782 -3841390 + L2 LINE L2 86 343 -3076 5 1502 550 249 151 48 chr9 120235139 120235325 -3840847 - B3 SINE B2 -10 206 2 5 1502 533 209 70 43 chr9 120235617 120235712 -3840460 + B3 SINE B2 1 103 -113 5 1502 2106 136 91 0 chr9 120235712 120236064 -3840108 + ORR1C2 LTR MaLR 1 384 0 5 1502 533 283 100 39 chr9 120236064 120236153 -3840019 + B3 SINE B2 104 198 0 5 1502 347 272 164 23 chr9 120236215 120236392 -3839780 - MamRep434 DNA TcMar -224 202 1 5 1502 429 208 103 57 chr9 120237028 120237187 -3838985 + B4 SINE B4 78 281 -11 5 1502 566 28 14 0 chr9 120237231 120237303 -3838869 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1502 574 159 173 8 chr9 120237310 120237437 -3838735 - B3 SINE B2 -67 149 2 5 1502 249 233 45 98 chr9 120237461 120237594 -3838578 - L1M4 LINE L1 -2148 3998 3873 5 1502 1697 219 7 107 chr9 120237609 120238029 -3838143 + MTE2b LTR MaLR 2 379 0 5 1502 875 291 92 11 chr9 120238074 120238319 -3837853 - L1M4 LINE L1 -2379 3767 3492 5 1502 207 0 0 0 chr9 120238319 120238342 -3837830 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1502 875 291 92 11 chr9 120238342 120238649 -3837523 - L1M4 LINE L1 -2655 3491 3170 5 1502 1022 257 115 11 chr9 120238650 120238937 -3837235 - ORR1E LTR MaLR 0 359 43 5 1502 462 99 316 26 chr9 120238937 120239051 -3837121 - B2_Mm2 SINE B2 -2 193 47 5 1502 1067 120 72 0 chr9 120239083 120239250 -3836922 - B2_Mm1a SINE B2 -14 179 1 5 1502 396 39 0 0 chr9 120240308 120240338 -3835834 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1502 1021 90 0 110 chr9 120240338 120240501 -3835671 + B1_Mus2 SINE Alu 3 147 0 5 1502 396 39 0 0 chr9 120240501 120240522 -3835650 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1502 320 254 14 0 chr9 120240740 120240811 -3835361 - B3A SINE B2 -89 109 38 5 1502 298 161 35 35 chr9 120241798 120241914 -3834258 + (TG)n Simple_repeat Simple_repeat 2 117 0 5 1502 250 179 27 107 chr9 120242062 120242137 -3834035 - PB1D7 SINE Alu -32 88 20 5 1502 349 256 43 22 chr9 120242070 120242162 -3834010 - B4A SINE B4 -117 175 82 5 1502 1121 206 24 0 chr9 120242174 120242383 -3833789 - B3 SINE B2 -1 215 2 5 1502 626 265 15 0 chr9 120242805 120242941 -3833231 + B1F1 SINE Alu 6 143 -6 5 1502 723 253 11 71 chr9 120242955 120243138 -3833034 + B3A SINE B2 7 178 -20 5 1502 738 102 0 0 chr9 120243139 120243257 -3832915 + (TC)n Simple_repeat Simple_repeat 1 118 0 5 1502 216 0 0 0 chr9 120243257 120243280 -3832892 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1502 236 262 0 62 chr9 120243702 120243767 -3832405 - ID_B1 SINE B4 -4 220 160 5 1502 660 220 47 0 chr9 120243833 120243983 -3832189 - ID_B1 SINE B4 -66 158 2 5 1502 329 102 17 0 chr9 120244303 120244362 -3831810 + (TCCC)n Simple_repeat Simple_repeat 3 62 0 5 1502 230 293 21 42 chr9 120244377 120244473 -3831699 - PB1D10 SINE Alu -22 95 2 5 1502 705 260 117 60 chr9 120245573 120245855 -3830317 - MTEa LTR MaLR -40 339 42 5 1502 766 231 260 13 chr9 120246239 120246563 -3829609 - MTC LTR MaLR 0 419 1 5 1502 1591 165 81 3 chr9 120246927 120247261 -3828911 - Lx3C LINE L1 -2 6974 6615 5 1502 3544 23 2 0 chr9 120247951 120248346 -3827826 - MTA_Mm LTR MaLR 0 396 1 5 1502 201 271 25 0 chr9 120248518 120248640 -3827532 + (TG)n Simple_repeat Simple_repeat 1 125 0 5 1502 382 232 18 12 chr9 120248668 120248834 -3827338 + (TG)n Simple_repeat Simple_repeat 1 167 0 5 1502 381 272 11 21 chr9 120248862 120248956 -3827216 - B4 SINE B4 -20 272 180 5 1502 553 261 25 38 chr9 120248984 120249143 -3827029 - B4 SINE B4 -79 213 57 5 1502 208 121 0 0 chr9 120249493 120249526 -3826646 + (C)n Simple_repeat Simple_repeat 1 33 0 5 1502 230 292 90 23 chr9 120249554 120249687 -3826485 + MLT1I LTR MaLR 69 210 -201 5 1502 791 222 277 23 chr9 120249819 120250119 -3826053 + MTE2a LTR MaLR 1 376 -3 5 1502 3585 43 33 0 chr9 120250300 120250722 -3825450 - RLTR10C LTR ERVK 0 436 1 5 1502 885 175 0 0 chr9 120251159 120251325 -3824847 + (TCCA)n Simple_repeat Simple_repeat 1 166 0 5 1502 387 0 0 0 chr9 120251323 120251366 -3824806 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1502 753 288 72 67 chr9 120251438 120251784 -3824388 + ORR1E LTR MaLR 6 353 -6 5 1502 803 241 12 12 chr9 120251856 120252020 -3824152 - RSINE1 SINE B4 0 165 2 5 1502 316 293 0 0 chr9 120252382 120252457 -3823715 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1502 1524 37 26 11 chr9 120253748 120253937 -3822235 - B2_Mm1a SINE B2 0 193 2 5 1502 504 305 31 43 chr9 120254103 120254115 -3822057 - RSINE1 SINE B4 -3 162 150 5 1502 282 73 0 0 chr9 120254115 120254156 -3822016 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1502 504 305 31 43 chr9 120254156 120254304 -3821868 - RSINE1 SINE B4 -16 149 4 5 1502 541 269 76 93 chr9 120254304 120254529 -3821643 - ID_B1 SINE B4 -3 221 1 5 1502 219 301 10 61 chr9 120254770 120254782 -3821390 - B4A SINE B4 -197 95 56 5 1502 368 243 0 0 chr9 120254782 120254856 -3821316 - ID4 SINE ID 0 83 10 5 1502 219 301 10 61 chr9 120254856 120254869 -3821303 - B4A SINE B4 -197 55 2 5 1502 192 125 0 0 chr9 120255448 120255480 -3820692 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 5 1502 720 289 77 46 chr9 120255552 120255880 -3820292 - MTE2a LTR MaLR -78 341 18 5 1502 1127 314 119 60 chr9 120256140 120256794 -3819378 - MER99 DNA hAT? -17 814 122 5 1502 797 236 12 12 chr9 120256806 120256973 -3819199 + ID_B1 SINE B4 1 167 -57 5 1502 306 292 67 11 chr9 120256893 120256983 -3819189 + PB1D10 SINE Alu 8 102 -15 5 1502 222 139 0 44 chr9 120256983 120257028 -3819144 + GA-rich Low_complexity Low_complexity 2 44 0 5 1502 336 298 24 16 chr9 120258635 120258758 -3817414 + PB1 SINE Alu 1 124 -3 5 1502 420 111 0 32 chr9 120258984 120259077 -3817095 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1502 225 0 0 0 chr9 120259077 120259102 -3817070 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1502 197 33 0 32 chr9 120259246 120259277 -3816895 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1502 226 284 31 87 chr9 120259852 120259868 -3816304 - B3 SINE B2 -95 121 2 5 1502 361 306 72 0 chr9 120259868 120259979 -3816193 - B4A SINE B4 -172 120 2 5 1502 632 316 25 49 chr9 120259956 120259985 -3816187 - B4 SINE B4 -37 255 225 5 1502 237 65 0 0 chr9 120259985 120260016 -3816156 + (CATA)n Simple_repeat Simple_repeat 1 31 0 5 1502 697 265 100 45 chr9 120260016 120260229 -3815943 - B4A SINE B4 -68 224 9 5 1502 700 280 62 118 chr9 120260969 120261273 -3814899 + B4A SINE B4 1 287 -5 5 1502 273 119 0 0 chr9 120261284 120261326 -3814846 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1502 683 258 6 25 chr9 120261598 120261757 -3814415 + RSINE1 SINE B4 4 159 -6 5 1502 234 186 0 0 chr9 120262830 120262873 -3813299 - B1_Mur2 SINE Alu -3 146 104 5 1502 603 251 34 86 chr9 120263136 120263345 -3812827 + B3A SINE B2 1 198 0 5 1502 564 15 0 0 chr9 120263543 120263608 -3812564 + (TCCC)n Simple_repeat Simple_repeat 1 65 0 5 1502 712 57 0 28 chr9 120263608 120263716 -3812456 + (TTTCC)n Simple_repeat Simple_repeat 4 108 0 5 1502 23 33 0 0 chr9 120264525 120264555 -3811617 + AT_rich Low_complexity Low_complexity 1 30 0 5 1502 318 283 0 0 chr9 120264578 120264812 -3811360 + (TG)n Simple_repeat Simple_repeat 1 234 0 5 1502 559 316 6 0 chr9 120264835 120265009 -3811163 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 1502 336 289 0 0 chr9 120265039 120265219 -3810953 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1502 877 234 24 3 chr9 120265277 120265471 -3810701 - B3A SINE B2 -15 201 7 5 1502 210 309 93 31 chr9 120265763 120265860 -3810312 - B1F SINE Alu -35 114 12 5 1502 1082 231 185 3 chr9 120265884 120266197 -3809975 - MTEa LTR MaLR -9 370 1 5 1502 901 257 30 145 chr9 120266771 120267212 -3808960 + MTE2a LTR MaLR 3 358 -21 5 1502 1320 245 36 7 chr9 120268353 120268633 -3807539 + B4 SINE B4 1 288 -4 5 1502 320 352 8 0 chr9 120268635 120268760 -3807412 + (CA)n Simple_repeat Simple_repeat 2 127 0 5 1502 256 365 85 38 chr9 120269071 120269239 -3806933 + B4A SINE B4 27 197 -95 5 1502 618 26 0 0 chr9 120269239 120269315 -3806857 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 1502 256 365 85 38 chr9 120269315 120269357 -3806815 + B4A SINE B4 198 247 -45 5 1502 313 297 0 0 chr9 120270174 120270238 -3805934 + ID SINE ID 1 64 -160 6 1502 265 261 43 1 chr9 120270271 120270348 -3805824 + MIRm SINE MIR 63 144 -132 6 1502 246 189 19 19 chr9 120271202 120271256 -3804916 + RMER15 LTR ERVL 7 60 -515 6 1502 868 86 8 0 chr9 120271274 120271391 -3804781 + B2_Mm2 SINE B2 32 149 -46 6 1502 248 260 159 38 chr9 120271473 120271596 -3804576 + RMER15 LTR ERVL 336 474 -101 6 1502 391 187 53 0 chr9 120271596 120271671 -3804501 + MTE2b LTR MaLR 1 79 -300 6 1502 374 270 31 10 chr9 120271685 120271808 -3804364 + MTE2b LTR MaLR 235 363 -16 6 1502 434 18 18 0 chr9 120271906 120271961 -3804211 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1502 450 0 0 0 chr9 120272860 120272910 -3803262 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1502 639 278 106 0 chr9 120273185 120273365 -3802807 - ID_B1 SINE B4 -25 199 1 6 1502 270 81 0 0 chr9 120273982 120274019 -3802153 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1502 663 274 107 30 chr9 120274037 120274308 -3801864 - B4A SINE B4 0 292 1 6 1502 24 0 0 0 chr9 120274598 120274622 -3801550 + GC_rich Low_complexity Low_complexity 1 24 0 6 1502 346 338 0 0 chr9 120274708 120274847 -3801325 + (TG)n Simple_repeat Simple_repeat 2 140 0 6 1502 180 0 0 0 chr9 120274858 120274878 -3801294 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1502 248 367 0 43 chr9 120274900 120274981 -3801191 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1502 405 0 0 0 chr9 120274981 120275026 -3801146 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1502 285 280 0 31 chr9 120275026 120275167 -3801005 + (TG)n Simple_repeat Simple_repeat 1 136 0 6 1502 414 0 0 0 chr9 120275204 120275250 -3800922 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1502 531 149 0 0 chr9 120275361 120275468 -3800704 + (TG)n Simple_repeat Simple_repeat 1 107 0 6 1502 654 290 128 8 chr9 120275476 120275733 -3800439 - B4A SINE B4 -4 288 1 6 1502 447 232 21 0 chr9 120275949 120276044 -3800128 - PB1D10 SINE Alu 0 117 21 6 1502 884 182 172 0 chr9 120276111 120276303 -3799869 + URR1B DNA MER1_type 1 225 0 6 1502 216 341 0 22 chr9 120276331 120276469 -3799703 + G-rich Low_complexity Low_complexity 4 138 0 6 1502 312 259 0 66 chr9 120276417 120276808 -3799364 + GA-rich Low_complexity Low_complexity 1 365 0 6 1502 664 209 0 17 chr9 120276939 120277056 -3799116 - PB1D9 SINE Alu 0 120 6 6 1502 449 269 0 9 chr9 120278240 120278345 -3797827 + PB1D10 SINE Alu 14 117 0 6 1502 381 172 16 0 chr9 120278346 120278410 -3797762 + ID4_ SINE ID 1 65 -18 6 1502 357 334 39 89 chr9 120278506 120278813 -3797359 + B4 SINE B4 6 290 -2 6 1502 342 67 0 0 chr9 120279216 120279261 -3796911 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1502 601 259 14 0 chr9 120279266 120279409 -3796763 - RSINE1 SINE B4 -18 147 3 6 1502 243 0 0 0 chr9 120279457 120279484 -3796688 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1502 188 277 29 44 chr9 120279768 120279836 -3796336 - MIRm SINE MIR -13 263 197 6 1502 554 173 29 0 chr9 120279886 120279990 -3796182 + B3 SINE B2 1 107 -109 6 1502 1119 37 0 0 chr9 120280022 120280158 -3796014 + (CA)n Simple_repeat Simple_repeat 2 137 0 6 1502 300 316 46 7 chr9 120280196 120280349 -3795823 + L1MB3 LINE L1 5998 6156 -27 6 1502 579 226 113 48 chr9 120280400 120280586 -3795586 + B3A SINE B2 1 198 0 6 1502 824 234 73 24 chr9 120280611 120280817 -3795355 + B3 SINE B2 1 216 0 6 1502 401 149 54 0 chr9 120280850 120280924 -3795248 + MTC LTR MaLR 1 78 -343 6 1502 565 272 45 64 chr9 120282007 120282164 -3794008 - RSINE1 SINE B4 0 165 12 6 1502 1199 179 19 14 chr9 120282282 120282492 -3793680 - B3 SINE B2 -4 212 2 6 1502 1047 262 11 167 chr9 120283283 120283732 -3792440 + MTE2a LTR MaLR 1 379 0 6 1502 212 316 124 43 chr9 120283886 120284071 -3792101 + L4 LINE RTE 1602 1801 -228 6 1502 884 244 56 114 chr9 120284165 120284360 -3791812 + B4 SINE B4 5 197 -95 6 1502 3080 26 0 3 chr9 120284360 120284707 -3791465 + ORR1A1 LTR MaLR 1 346 0 6 1502 884 244 56 114 chr9 120284707 120284817 -3791355 + B4 SINE B4 198 292 0 6 1502 510 278 0 0 chr9 120284821 120285001 -3791171 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1502 200 250 12 0 chr9 120285413 120285493 -3790679 + CT-rich Low_complexity Low_complexity 1 81 0 6 1502 886 253 13 26 chr9 120285826 120286053 -3790119 - ID_B1 SINE B4 0 224 1 6 1502 569 260 75 40 chr9 120286220 120286420 -3789752 - Lx8 LINE L1 0 7473 7267 6 1502 225 170 38 0 chr9 120286666 120286719 -3789453 - Lx8 LINE L1 -234 7239 7185 6 1502 191 211 0 0 chr9 120286788 120286826 -3789346 + MIR SINE MIR 110 147 -61 6 1502 734 275 82 41 chr9 120287165 120287452 -3788720 - B4 SINE B4 -14 278 14 6 1502 283 312 12 0 chr9 120287855 120287935 -3788237 - MLT2D LTR ERVL -243 171 91 6 1502 218 235 27 0 chr9 120287938 120288087 -3788085 + (TG)n Simple_repeat Simple_repeat 2 154 0 6 1502 234 0 0 0 chr9 120288093 120288119 -3788053 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1502 552 15 0 0 chr9 120288119 120288183 -3787989 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1502 284 314 0 14 chr9 120288183 120288254 -3787918 - B2_Mm2 SINE B2 -124 71 2 6 1502 226 280 106 11 chr9 120288259 120288353 -3787819 - MLT2D LTR ERVL -304 110 8 6 1502 21 0 0 0 chr9 120288685 120288706 -3787466 + AT_rich Low_complexity Low_complexity 1 21 0 6 1502 21 0 0 0 chr9 120288818 120288839 -3787333 + GC_rich Low_complexity Low_complexity 1 21 0 6 1502 1352 136 149 19 chr9 120289862 120290144 -3786028 - ORR1B1 LTR MaLR -42 304 1 6 1502 232 245 57 0 chr9 120290242 120290295 -3785877 + B3A SINE B2 117 172 -26 6 1502 306 67 0 0 chr9 120290297 120290342 -3785830 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1502 270 0 0 0 chr9 120290342 120290372 -3785800 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1502 629 269 132 0 chr9 120291600 120291797 -3784375 + B4A SINE B4 64 286 -6 6 1502 495 48 0 0 chr9 120292354 120292416 -3783756 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 1502 360 286 160 42 chr9 120292966 120293477 -3782695 + L1M4 LINE L1 5222 5806 -372 6 1502 1143 259 108 46 chr9 120293486 120293960 -3782212 + Lx8 LINE L1 6969 7471 -2 6 1502 3825 35 5 0 chr9 120295044 120295478 -3780694 + RLTR10C LTR ERVK 1 436 0 6 1502 943 275 24 8 chr9 120295854 120296100 -3780072 + B4A SINE B4 1 250 -42 6 1502 1476 259 76 23 chr9 120296116 120296602 -3779570 - Lx8 LINE L1 -4 7469 6958 6 1502 303 340 14 7 chr9 120296627 120296769 -3779403 + (CA)n Simple_repeat Simple_repeat 1 143 0 6 1502 227 31 0 30 chr9 120296792 120296825 -3779347 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1502 1273 106 16 5 chr9 120296908 120297097 -3779075 - B2_Mm2 SINE B2 -2 193 3 6 1502 492 111 20 10 chr9 120298665 120298765 -3777407 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 6 1502 211 211 19 37 chr9 120298945 120298999 -3777173 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 6 1502 2033 118 81 6 chr9 120299473 120299796 -3776376 + ORR1B1 LTR MaLR 48 394 0 6 1502 297 261 0 0 chr9 120299871 120299940 -3776232 + B3 SINE B2 3 71 -145 6 1502 189 351 0 49 chr9 120300492 120300573 -3775599 + MIRb SINE MIR 51 127 -141 6 1502 23 33 0 0 chr9 120300778 120300808 -3775364 + AT_rich Low_complexity Low_complexity 1 30 0 6 1502 315 203 0 173 chr9 120301127 120301230 -3774942 + ID_B1 SINE B4 76 157 -67 6 1502 952 280 74 7 chr9 120301230 120301436 -3774736 + B4A SINE B4 1 223 -69 6 1502 198 0 0 0 chr9 120301436 120301458 -3774714 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 6 1502 952 280 74 7 chr9 120301458 120301521 -3774651 + B4A SINE B4 224 287 -5 6 1502 277 207 0 79 chr9 120301587 120301650 -3774522 + ID_B1 SINE B4 150 207 -17 6 1502 180 0 0 0 chr9 120301875 120301895 -3774277 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 6 1502 186 143 0 0 chr9 120301895 120301930 -3774242 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 6 1502 706 255 37 83 chr9 120303086 120303304 -3772868 + B4A SINE B4 1 208 -84 6 1502 762 251 129 35 chr9 120304000 120304256 -3771916 + B4 SINE B4 5 284 -8 6 1502 231 345 62 29 chr9 120305090 120305299 -3770873 - L1MB2 LINE L1 -15 6168 5953 6 1502 246 148 0 0 chr9 120305299 120305353 -3770819 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1502 287 155 10 18 chr9 120305361 120305424 -3770748 - L1MB3 LINE L1 -211 5960 5895 6 1502 636 246 81 108 chr9 120305818 120306041 -3770131 - MTEa LTR MaLR -162 217 1 6 1502 3608 40 28 5 chr9 120306540 120306966 -3769206 - RLTR10C LTR ERVK 0 436 1 6 1502 731 130 382 18 chr9 120307202 120307367 -3768805 + URR1A DNA MER1_type 1 225 -1 6 1502 326 302 124 58 chr9 120307613 120307887 -3768285 - L1M5 LINE L1 -1305 4841 4550 6 1502 376 345 85 30 chr9 120308085 120308285 -3767887 + B4A SINE B4 74 284 -8 6 1502 528 281 123 24 chr9 120308404 120308696 -3767476 + L1MA9 LINE L1 5991 6311 -1 6 1502 294 195 256 0 chr9 120308784 120308866 -3767306 + B2_Mm2 SINE B2 23 125 -70 6 1502 3384 28 8 3 chr9 120308894 120309285 -3766887 + MTA_Mm LTR MaLR 1 393 -3 6 1502 387 0 0 0 chr9 120309285 120309328 -3766844 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1502 183 80 0 0 chr9 120309342 120309367 -3766805 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 1502 206 121 0 0 chr9 120309385 120309418 -3766754 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 6 1502 676 254 117 15 chr9 120309422 120309618 -3766554 + B3 SINE B2 1 216 0 6 1502 225 0 0 0 chr9 120310079 120310104 -3766068 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1502 2412 167 132 18 chr9 120310242 120310735 -3765437 - RMER15 LTR ERVL 0 575 27 6 1502 412 268 19 121 chr9 120311109 120311223 -3764949 - B3A SINE B2 -4 212 112 6 1502 2493 173 29 25 chr9 120311223 120311479 -3764693 - RLTR28 LTR ERVL 0 524 265 6 1502 243 88 0 0 chr9 120311479 120311513 -3764659 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1502 2493 173 29 25 chr9 120311513 120311778 -3764394 - RLTR28 LTR ERVL -260 264 1 6 1502 412 278 10 58 chr9 120311778 120311820 -3764352 - B3A SINE B2 -85 113 72 6 1502 528 16 0 0 chr9 120312321 120312382 -3763790 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 7 1502 533 321 46 85 chr9 120312783 120313089 -3763083 + Charlie24 DNA MER1_type 986 1279 -1171 7 1502 228 313 0 15 chr9 120313348 120313416 -3762756 + RSINE1 SINE B4 2 68 -97 7 1502 234 274 48 19 chr9 120314040 120314144 -3762028 + Charlie24 DNA MER1_type 2105 2211 -239 7 1502 216 0 0 0 chr9 120314244 120314268 -3761904 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1502 248 288 0 0 chr9 120314268 120314334 -3761838 + B3A SINE B2 34 99 -99 7 1502 1158 134 0 4 chr9 120314334 120314587 -3761585 + (CCA)n Simple_repeat Simple_repeat 1 252 0 7 1502 241 266 108 19 chr9 120314587 120314723 -3761449 + B3A SINE B2 68 211 -5 7 1502 377 167 19 19 chr9 120316230 120316334 -3759838 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1502 676 261 10 67 chr9 120316351 120316544 -3759628 - B3A SINE B2 -16 182 1 7 1502 326 352 53 32 chr9 120317114 120317302 -3758870 + L1MC LINE L1 5635 5826 -2056 7 1502 1526 183 120 24 chr9 120317419 120317760 -3758412 - ORR1D1 LTR MaLR 0 374 1 7 1502 795 283 25 99 chr9 120317851 120318165 -3758007 + B4A SINE B4 1 291 -1 7 1502 454 265 58 126 chr9 120319565 120319772 -3756400 - B3A SINE B2 -5 193 1 7 1502 204 135 0 0 chr9 120319844 120319881 -3756291 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1502 403 334 84 8 chr9 120319986 120320357 -3755815 - L1MA6 LINE L1 -6 6294 5896 7 1502 379 278 72 16 chr9 120320372 120320566 -3755606 - L1MA6 LINE L1 -943 5200 4996 7 1502 361 286 168 29 chr9 120320626 120320763 -3755409 - L1MA6 LINE L1 -1251 4892 4737 7 1502 509 260 47 0 chr9 120321078 120321205 -3754967 - RSINE1 SINE B4 -15 150 18 7 1502 1445 242 73 3 chr9 120321681 120322021 -3754151 + MTE2b LTR MaLR 1 364 -15 7 1502 276 275 62 0 chr9 120322455 120322535 -3753637 + MER5A DNA MER1_type 44 128 -61 7 1502 653 205 0 0 chr9 120322648 120322760 -3753412 + PB1D10 SINE Alu 1 112 -5 7 1502 1443 85 21 0 chr9 120322793 120322982 -3753190 + B2_Mm1a SINE B2 1 193 0 7 1502 901 188 252 76 chr9 120323224 120323360 -3752812 + ORR1D1 LTR MaLR 1 135 -239 7 1502 216 0 0 0 chr9 120323360 120323384 -3752788 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 7 1502 901 188 252 76 chr9 120323384 120323564 -3752608 + ORR1D1 LTR MaLR 136 373 -1 7 1503 228 35 0 0 chr9 120324945 120324974 -3751198 + (C)n Simple_repeat Simple_repeat 1 29 0 7 1503 343 220 226 8 chr9 120325913 120326046 -3750126 - MLT1H LTR MaLR -6 543 382 7 1503 813 202 161 95 chr9 120326588 120326862 -3749310 - B4 SINE B4 0 292 1 7 1503 542 285 7 20 chr9 120327110 120327257 -3748915 - B4A SINE B4 -147 145 1 7 1503 243 314 37 20 chr9 120327725 120327883 -3748289 - MIRc SINE MIR -104 158 2 7 1503 283 253 11 46 chr9 120327898 120327985 -3748187 - MLT1H LTR MaLR -15 350 267 7 1503 369 0 0 0 chr9 120328017 120328058 -3748114 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1503 692 200 9 200 chr9 120328069 120328294 -3747878 - B3A SINE B2 -16 182 1 7 1503 247 298 67 135 chr9 120328311 120328533 -3747639 - MLT1H LTR MaLR -195 213 1 7 1503 538 258 79 7 chr9 120329341 120329493 -3746679 + RSINE1 SINE B4 1 163 -2 7 1503 360 259 0 0 chr9 120329495 120329603 -3746569 + (CA)n Simple_repeat Simple_repeat 1 108 0 7 1503 647 190 0 32 chr9 120329617 120329802 -3746370 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1503 315 286 36 80 chr9 120329827 120329964 -3746208 + HAL1-3A_ME LINE L1 1976 2106 -752 7 1503 384 184 38 140 chr9 120330396 120330505 -3745667 + PB1D10 SINE Alu 5 101 -16 7 1503 320 343 30 10 chr9 120330574 120330674 -3745498 + B4A SINE B4 15 116 -176 7 1503 226 282 188 60 chr9 120332318 120332435 -3743737 + B1_Mur1 SINE Alu 12 143 -6 7 1503 747 228 27 14 chr9 120332353 120332500 -3743672 + B4A SINE B4 142 290 -2 7 1503 218 359 39 10 chr9 120332728 120332832 -3743340 + MIR SINE MIR 80 186 -76 7 1503 301 313 104 0 chr9 120332900 120333015 -3743157 + MER2B DNA MER2_type 25 151 -185 7 1503 984 260 0 9 chr9 120333297 120333507 -3742665 - B4 SINE B4 -30 262 55 7 1503 575 191 7 0 chr9 120334105 120334252 -3741920 + (TG)n Simple_repeat Simple_repeat 1 148 0 7 1503 304 293 0 20 chr9 120334258 120334359 -3741813 + (TATG)n Simple_repeat Simple_repeat 4 102 0 7 1503 1023 251 51 28 chr9 120334360 120334614 -3741558 - B4 SINE B4 0 292 33 7 1503 192 211 171 0 chr9 120334673 120334749 -3741423 - MIRm SINE MIR -131 145 54 7 1503 403 376 0 6 chr9 120335626 120335863 -3740309 + (TG)n Simple_repeat Simple_repeat 1 235 0 7 1503 1190 232 16 69 chr9 120335865 120336170 -3740002 - B4 SINE B4 0 292 4 7 1503 678 237 34 7 chr9 120336820 120336972 -3739200 - ID_B1 SINE B4 0 224 74 7 1503 462 18 0 0 chr9 120337039 120337094 -3739078 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1503 248 136 21 54 chr9 120337821 120337914 -3738258 + CT-rich Low_complexity Low_complexity 2 91 0 7 1503 771 290 20 10 chr9 120338148 120338343 -3737829 - B3A SINE B2 -1 197 1 7 1503 698 285 117 42 chr9 120338434 120338530 -3737642 + B4A SINE B4 9 96 -196 7 1503 692 193 75 91 chr9 120338530 120338729 -3737443 + B3A SINE B2 2 197 -1 7 1503 698 285 117 42 chr9 120338729 120338843 -3737329 + B4A SINE B4 97 230 -62 7 1503 748 253 118 23 chr9 120338843 120339106 -3737066 + B4A SINE B4 3 290 -2 7 1503 698 285 117 42 chr9 120339106 120339158 -3737014 + B4A SINE B4 231 291 -1 7 1503 471 291 0 0 chr9 120339196 120339375 -3736797 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1503 217 229 16 32 chr9 120339377 120339440 -3736732 + (CATA)n Simple_repeat Simple_repeat 3 64 0 7 1503 189 0 0 0 chr9 120340456 120340477 -3735695 + (GA)n Simple_repeat Simple_repeat 1 21 0 7 1503 180 176 0 0 chr9 120340909 120340943 -3735229 + (CAT)n Simple_repeat Simple_repeat 1 34 0 7 1503 1232 272 11 16 chr9 120340952 120341315 -3734857 - Lx8 LINE L1 -191 7282 6922 7 1503 793 270 147 27 chr9 120342394 120342516 -3733656 + B4 SINE B4 2 144 -148 7 1503 204 40 0 0 chr9 120342516 120342541 -3733631 + (CAGAGA)n Simple_repeat Simple_repeat 4 28 0 7 1503 793 270 147 27 chr9 120342541 120342677 -3733495 + B4 SINE B4 145 291 -1 7 1503 1564 188 67 27 chr9 120342705 120343033 -3733139 - MTD LTR MaLR -66 353 13 7 1503 28 48 0 0 chr9 120343348 120343390 -3732782 + AT_rich Low_complexity Low_complexity 1 42 0 7 1503 301 274 96 59 chr9 120343415 120343551 -3732621 + MT2B LTR ERVL 123 263 -338 7 1503 355 346 53 23 chr9 120343437 120343453 -3732719 + ID_B1 SINE B4 67 203 -21 7 1503 425 291 86 0 chr9 120343453 120343570 -3732602 + B1F2 SINE Alu 2 128 -21 7 1503 910 206 23 28 chr9 120343604 120343819 -3732353 + B3 SINE B2 3 216 0 7 1503 2576 135 24 14 chr9 120343888 120344302 -3731870 - MTC LTR MaLR -2 419 2 7 1503 552 228 189 23 chr9 120344548 120344723 -3731449 + B4 SINE B4 1 204 -88 7 1503 378 0 0 0 chr9 120344723 120344765 -3731407 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1503 341 275 0 0 chr9 120344861 120344930 -3731242 - B3A SINE B2 -114 84 16 7 1503 913 140 42 0 chr9 120345448 120345591 -3730581 - B1F2 SINE Alu 0 149 1 7 1503 789 238 52 26 chr9 120345639 120345833 -3730339 + ID_B1 SINE B4 1 199 -25 7 1503 345 263 0 0 chr9 120346069 120346145 -3730027 + C-rich Low_complexity Low_complexity 2 77 0 7 1503 410 242 11 27 chr9 120346146 120346329 -3729843 + CT-rich Low_complexity Low_complexity 1 180 0 7 1503 212 132 0 50 chr9 120346820 120346860 -3729312 + CT-rich Low_complexity Low_complexity 2 39 0 7 1503 315 281 11 33 chr9 120346876 120346968 -3729204 - PB1D10 SINE Alu -8 109 20 7 1503 558 203 96 22 chr9 120347227 120347363 -3728809 - B1F SINE Alu -1 148 3 7 1503 745 169 117 12 chr9 120347541 120347703 -3728469 + B3A SINE B2 2 180 -18 7 1503 687 234 14 0 chr9 120348301 120348442 -3727730 + RSINE1 SINE B4 3 145 -20 7 1503 194 62 0 30 chr9 120348461 120348494 -3727678 + (CATA)n Simple_repeat Simple_repeat 4 35 0 7 1503 226 331 57 35 chr9 120348995 120349136 -3727036 + L2c LINE L2 3064 3207 -180 7 1503 441 104 0 0 chr9 120349366 120349443 -3726729 + (CATA)n Simple_repeat Simple_repeat 2 78 0 7 1503 258 198 0 218 chr9 120349663 120349705 -3726467 + B4 SINE B4 207 240 -52 7 1503 1631 157 24 203 chr9 120349705 120350168 -3726004 + ORR1C2 LTR MaLR 5 384 0 7 1503 258 198 0 218 chr9 120350168 120350235 -3725937 + B4 SINE B4 241 292 0 7 1503 260 164 71 18 chr9 120351479 120351647 -3724525 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 7 1503 222 150 0 0 chr9 120351734 120351774 -3724398 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 7 1503 1530 245 103 53 chr9 120351775 120352379 -3723793 - RLTR18 LTR ERVK -85 531 1 7 1503 222 118 0 0 chr9 120352446 120352480 -3723692 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 7 1503 261 0 0 0 chr9 120352781 120352810 -3723362 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1503 378 0 0 0 chr9 120352810 120352851 -3723321 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1503 189 0 0 0 chr9 120353744 120353765 -3722407 + (TTG)n Simple_repeat Simple_repeat 1 21 0 7 1503 234 255 234 9 chr9 120353785 120353892 -3722280 + MIR SINE MIR 127 257 -5 7 1503 290 75 0 36 chr9 120354152 120354207 -3721965 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 7 1503 362 179 23 103 chr9 120355940 120355985 -3720187 - HAL1-3A_ME LINE L1 -805 2053 2015 7 1503 441 0 0 0 chr9 120355985 120356034 -3720138 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 1503 362 179 23 103 chr9 120356034 120356075 -3720097 - HAL1-3A_ME LINE L1 -844 2014 1974 7 1503 186 207 24 24 chr9 120356090 120356174 -3719998 + (TATG)n Simple_repeat Simple_repeat 2 85 0 7 1503 590 161 18 24 chr9 120356218 120356383 -3719789 + (TATG)n Simple_repeat Simple_repeat 4 167 0 7 1503 640 279 82 0 chr9 120356385 120356532 -3719640 - RSINE1 SINE B4 -1 164 6 7 1503 706 290 32 5 chr9 120357399 120357591 -3718581 + B4 SINE B4 35 232 -60 7 1503 752 229 26 0 chr9 120357591 120357744 -3718428 + B3A SINE B2 1 157 -41 7 1503 180 0 0 0 chr9 120357746 120357766 -3718406 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1503 6383 21 4 0 chr9 120357799 120358524 -3717648 + L1Md_F2 LINE L1 5855 6582 0 7 1503 1274 54 0 0 chr9 120358532 120358679 -3717493 + B1_Mus2 SINE Alu 1 147 0 7 1503 462 120 0 0 chr9 120358756 120358831 -3717341 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 1503 828 0 0 0 chr9 120359499 120359591 -3716581 + (TC)n Simple_repeat Simple_repeat 1 92 0 8 1503 23 33 0 0 chr9 120360388 120360418 -3715754 + AT_rich Low_complexity Low_complexity 1 30 0 8 1503 515 319 107 52 chr9 120360974 120361245 -3714927 + B4A SINE B4 2 287 -5 8 1503 632 202 177 6 chr9 120361824 120361988 -3714184 - B2_Mm2 SINE B2 -3 192 1 8 1503 220 200 13 13 chr9 120362021 120362097 -3714075 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1503 469 136 39 13 chr9 120362111 120362267 -3713905 + (TG)n Simple_repeat Simple_repeat 1 160 0 8 1503 594 115 28 44 chr9 120362328 120362510 -3713662 + (TG)n Simple_repeat Simple_repeat 1 179 0 8 1503 298 333 28 110 chr9 120363417 120363734 -3712438 + B4A SINE B4 1 291 -1 8 1503 231 61 0 0 chr9 120363761 120363794 -3712378 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 8 1503 876 298 74 26 chr9 120363794 120364252 -3711920 - MER31A LTR ERV1 -3 482 3 8 1503 1011 235 125 4 chr9 120364350 120364586 -3711586 + B4 SINE B4 3 269 -23 8 1503 411 113 0 0 chr9 120364586 120364648 -3711524 + (CACG)n Simple_repeat Simple_repeat 4 65 0 8 1503 1011 235 125 4 chr9 120364648 120364659 -3711513 + B4 SINE B4 270 280 -12 8 1503 1099 235 153 64 chr9 120366008 120366354 -3709818 - MTE2a LTR MaLR 0 379 3 8 1503 895 271 11 0 chr9 120366354 120366542 -3709630 + B3 SINE B2 1 190 -26 8 1503 209 33 33 0 chr9 120366542 120366572 -3709600 + (TA)n Simple_repeat Simple_repeat 1 31 0 8 1503 207 173 0 0 chr9 120366895 120366947 -3709225 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1503 251 255 7 0 chr9 120367091 120367240 -3708932 + (CA)n Simple_repeat Simple_repeat 1 150 0 8 1503 185 275 6 0 chr9 120367322 120367489 -3708683 + (CA)n Simple_repeat Simple_repeat 1 168 0 8 1503 309 250 11 0 chr9 120367501 120367589 -3708583 + (CA)n Simple_repeat Simple_repeat 1 89 0 8 1503 202 226 48 0 chr9 120367953 120368015 -3708157 + (CTGGGG)n Simple_repeat Simple_repeat 1 65 0 8 1503 281 323 92 68 chr9 120368067 120368273 -3707899 - RLTR24 LTR ERV1 0 529 319 8 1503 328 268 23 11 chr9 120368416 120368503 -3707669 - RLTR24 LTR ERV1 -437 92 5 8 1503 444 286 163 0 chr9 120368547 120368694 -3707478 + B4 SINE B4 116 286 -6 8 1503 549 30 0 0 chr9 120368706 120368773 -3707399 + (TC)n Simple_repeat Simple_repeat 1 67 0 8 1503 351 0 0 0 chr9 120368773 120368811 -3707361 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1503 1525 62 5 0 chr9 120368870 120369062 -3707110 - B2_Mm1t SINE B2 0 193 1 8 1503 196 370 36 15 chr9 120369497 120369634 -3706538 + MIR SINE MIR 63 202 -60 8 1503 772 222 1 20 chr9 120369645 120369810 -3706362 + RSINE1 SINE B4 3 165 0 8 1503 540 271 138 22 chr9 120370858 120371039 -3705133 - B3 SINE B2 -12 204 3 8 1503 607 287 54 0 chr9 120371121 120371288 -3704884 + B4A SINE B4 23 198 -94 8 1503 228 286 36 0 chr9 120371273 120371329 -3704843 + B4A SINE B4 141 198 -94 8 1503 478 292 86 14 chr9 120371347 120371491 -3704681 + B4A SINE B4 141 288 -4 8 1503 648 276 22 0 chr9 120371720 120371901 -3704271 + B3A SINE B2 1 185 -13 8 1503 428 278 73 46 chr9 120372171 120372322 -3703850 + ID_B1 SINE B4 70 224 0 8 1503 397 270 5 159 chr9 120372381 120372570 -3703602 + RSINE1 SINE B4 6 165 0 8 1503 702 317 72 0 chr9 120372670 120372878 -3703294 + B4 SINE B4 2 224 -68 8 1503 1407 238 24 15 chr9 120372906 120373239 -3702933 - Lx8 LINE L1 -558 6915 6580 8 1503 943 174 6 9 chr9 120373537 120373700 -3702472 + ID_B1 SINE B4 80 240 -52 8 1503 676 289 125 72 chr9 120374275 120374435 -3701737 - BGLII_B LTR ERVK -27 414 242 8 1503 944 94 6 0 chr9 120374435 120374594 -3701578 + (TC)n Simple_repeat Simple_repeat 1 160 0 8 1503 676 289 125 72 chr9 120374594 120374824 -3701348 - BGLII_B LTR ERVK -200 241 3 8 1503 281 285 24 12 chr9 120374869 120375036 -3701136 + (TG)n Simple_repeat Simple_repeat 1 169 0 8 1503 211 170 37 19 chr9 120375131 120375185 -3700987 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1503 1084 177 30 159 chr9 120375224 120375594 -3700578 - RLTRETN_Mm LTR ERVK 0 322 1 8 1503 204 155 42 0 chr9 120375883 120375954 -3700218 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1503 390 328 0 17 chr9 120376021 120376198 -3699974 + (TG)n Simple_repeat Simple_repeat 1 174 0 8 1503 214 300 150 0 chr9 120376236 120376316 -3699856 - B3A SINE B2 -102 96 5 8 1503 181 206 0 0 chr9 120376546 120376580 -3699592 + L2 LINE L2 1490 1523 -1896 8 1503 489 276 16 0 chr9 120377174 120377297 -3698875 + B1F SINE Alu 11 135 -14 8 1503 1612 152 77 17 chr9 120377319 120377652 -3698520 - MTC LTR MaLR 0 421 46 8 1503 659 174 112 15 chr9 120378171 120378305 -3697867 - B1F2 SINE Alu -2 147 1 8 1503 818 198 0 6 chr9 120378713 120378891 -3697281 + GA-rich Low_complexity Low_complexity 4 180 0 8 1503 616 156 28 0 chr9 120378897 120379006 -3697166 - MTC LTR MaLR -309 112 1 8 1503 453 245 68 48 chr9 120379006 120379147 -3697025 + RSINE1 SINE B4 22 165 0 8 1503 346 250 31 7 chr9 120379148 120379441 -3696731 + (CA)n Simple_repeat Simple_repeat 1 300 0 8 1503 385 213 34 11 chr9 120379470 120379646 -3696526 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1503 424 230 17 22 chr9 120379681 120379859 -3696313 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 1503 252 86 0 0 chr9 120379861 120379896 -3696276 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 8 1503 459 14 56 14 chr9 120379901 120379972 -3696200 + (CACAC)n Simple_repeat Simple_repeat 2 75 0 8 1503 290 330 56 9 chr9 120380024 120380131 -3696041 + PB1D7 SINE Alu 1 112 -8 8 1503 360 259 68 129 chr9 120380595 120380843 -3695329 - ORR1E LTR MaLR -14 345 113 8 1503 1208 196 10 0 chr9 120381158 120381357 -3694815 + B3 SINE B2 4 204 -12 8 1503 27 49 0 0 chr9 120383780 120383821 -3692351 + AT_rich Low_complexity Low_complexity 1 41 0 8 1503 1042 231 30 72 chr9 120384288 120384592 -3691580 - B4A SINE B4 0 292 2 8 1503 483 243 220 6 chr9 120385084 120385266 -3690906 + RMER15 LTR ERVL 304 524 -51 8 1503 1374 41 0 0 chr9 120385365 120385534 -3690638 + (CA)n Simple_repeat Simple_repeat 1 169 0 8 1503 889 109 69 55 chr9 120385797 120385942 -3690230 - B1_Mus1 SINE Alu 0 148 2 8 1503 226 194 202 61 chr9 120386091 120386190 -3689982 + MTC LTR MaLR 308 420 -1 8 1503 661 245 7 35 chr9 120386549 120386693 -3689479 - B1_Mur1 SINE Alu -9 140 1 8 1503 882 269 65 31 chr9 120386747 120387008 -3689164 + B4 SINE B4 2 271 -21 8 1503 486 79 0 0 chr9 120387012 120387088 -3689084 + (CA)n Simple_repeat Simple_repeat 2 77 0 8 1503 1261 231 114 15 chr9 120387205 120387539 -3688633 + MTD LTR MaLR 1 367 -52 8 1503 226 250 66 53 chr9 120387924 120388000 -3688172 - MER5A1 DNA MER1_type -59 107 31 8 1503 364 271 12 0 chr9 120388396 120388481 -3687691 + B4 SINE B4 1 86 -206 8 1503 324 0 0 0 chr9 120388481 120388517 -3687655 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1503 552 213 67 59 chr9 120388535 120388670 -3687502 + B4A SINE B4 90 225 -67 8 1503 881 223 17 6 chr9 120388676 120388852 -3687320 + B3A SINE B2 2 179 -19 8 1503 1008 108 175 0 chr9 120388909 120389075 -3687097 + B2_Mm2 SINE B2 1 195 0 8 1503 647 250 35 0 chr9 120389700 120389844 -3686328 - B1_Mur3 SINE Alu 0 149 1 8 1503 250 26 0 49 chr9 120390644 120390685 -3685487 + (GA)n Simple_repeat Simple_repeat 1 39 0 8 1503 804 127 0 0 chr9 120390783 120390948 -3685224 + (TG)n Simple_repeat Simple_repeat 2 166 0 8 1503 234 0 0 0 chr9 120390951 120390977 -3685195 + (TGG)n Simple_repeat Simple_repeat 2 27 0 8 1503 1010 232 119 4 chr9 120391013 120391281 -3684891 + ORR1D2 LTR MaLR 69 367 -3 8 1503 338 281 0 7 chr9 120391879 120392033 -3684139 + (TG)n Simple_repeat Simple_repeat 1 153 0 8 1503 588 251 132 11 chr9 120392085 120392274 -3683898 - B3 SINE B2 0 216 5 8 1503 192 77 0 0 chr9 120392610 120392636 -3683536 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 8 1503 279 140 0 0 chr9 120392985 120393035 -3683137 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1503 1056 211 106 47 chr9 120393066 120393340 -3682832 + ORR1E LTR MaLR 8 297 -62 8 1503 753 279 9 9 chr9 120393345 120393566 -3682606 + Lx9 LINE L1 6631 6851 -793 8 1503 843 269 3 83 chr9 120394014 120394302 -3681870 + Lx9 LINE L1 6860 7124 -520 8 1503 210 175 0 48 chr9 120394381 120394423 -3681749 - L3 LINE CR1 -1021 3468 3429 8 1503 633 279 119 48 chr9 120394832 120395186 -3680986 - MTE2a LTR MaLR 0 379 1 8 1503 783 285 74 29 chr9 120395850 120396092 -3680080 + B4A SINE B4 14 266 -26 8 1503 270 0 0 0 chr9 120396109 120396139 -3680033 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1503 277 387 109 18 chr9 120396857 120397086 -3679086 + MLT1A1 LTR MaLR 61 310 -98 8 1503 616 247 90 162 chr9 120397090 120397312 -3678860 + ID_B1 SINE B4 18 223 -1 8 1503 381 252 34 51 chr9 120397334 120397451 -3678721 + PB1 SINE Alu 13 127 0 8 1503 1208 35 21 0 chr9 120398117 120398260 -3677912 + B1_Mus2 SINE Alu 2 147 0 8 1503 888 162 0 45 chr9 120398437 120398592 -3677580 + B1_Mur2 SINE Alu 1 148 -1 8 1503 31 0 0 0 chr9 120398592 120398623 -3677549 + AT_rich Low_complexity Low_complexity 1 31 0 8 1503 413 324 107 23 chr9 120398796 120399011 -3677161 - LTR16B LTR ERVL -146 317 85 8 1503 566 251 78 67 chr9 120399963 120400142 -3676030 - B3A SINE B2 -17 181 1 8 1503 24 0 0 0 chr9 120400385 120400409 -3675763 + AT_rich Low_complexity Low_complexity 1 24 0 8 1503 293 200 154 39 chr9 120400417 120400495 -3675677 + RSINE1 SINE B4 3 89 -76 8 1503 515 210 189 15 chr9 120400768 120400919 -3675253 + B3A SINE B2 30 191 -4 8 1503 238 281 92 20 chr9 120400915 120401013 -3675159 + Charlie4a DNA MER1_type 258 362 -146 8 1503 414 0 0 0 chr9 120402492 120402538 -3673634 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1503 371 206 57 38 chr9 120405361 120405467 -3670705 + PB1D10 SINE Alu 3 110 -7 8 1503 252 0 0 0 chr9 120406347 120406375 -3669797 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1503 323 279 117 35 chr9 120406768 120406913 -3669259 + ID_B1 SINE B4 53 209 -15 8 1503 1011 233 50 28 chr9 120407358 120407641 -3668531 + B4A SINE B4 2 290 -2 9 1503 257 326 137 39 chr9 120407909 120408091 -3668081 - Cheshire DNA MER1_type -2129 291 92 9 1503 218 32 0 31 chr9 120408101 120408133 -3668039 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 9 1503 477 221 56 78 chr9 120408473 120408615 -3667557 + B3 SINE B2 78 216 0 9 1503 1293 85 17 0 chr9 120408786 120408962 -3667210 + B2_Mm2 SINE B2 2 180 -15 9 1503 429 167 0 0 chr9 120409058 120409136 -3667036 + (TA)n Simple_repeat Simple_repeat 2 79 0 9 1503 500 236 18 0 chr9 120409434 120409544 -3666628 + PB1D10 SINE Alu 1 112 -5 9 1503 851 173 7 21 chr9 120409740 120409882 -3666290 + B1_Mur2 SINE Alu 1 140 -9 9 1503 544 27 0 26 chr9 120409955 120410031 -3666141 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 9 1503 339 320 85 85 chr9 120411394 120411582 -3664590 + MTE2a LTR MaLR 82 269 -110 9 1503 294 325 0 0 chr9 120411975 120412052 -3664120 + PB1D10 SINE Alu 40 116 -1 9 1503 964 113 0 40 chr9 120412057 120412205 -3663967 + B1_Mus1 SINE Alu 1 142 -6 9 1503 213 194 0 0 chr9 120412207 120412243 -3663929 + (CAAG)n Simple_repeat Simple_repeat 2 37 0 9 1503 769 187 75 0 chr9 120412244 120412378 -3663794 + B1_Mur3 SINE Alu 1 144 -5 9 1503 261 119 0 0 chr9 120412385 120412427 -3663745 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 9 1503 490 185 57 21 chr9 120412444 120412578 -3663594 + B3 SINE B2 46 192 -3 9 1503 414 245 19 19 chr9 120413278 120413386 -3662786 + PB1D10 SINE Alu 3 110 -7 9 1503 220 294 127 9 chr9 120413805 120413915 -3662257 + B4 SINE B4 70 192 -100 9 1503 433 274 58 29 chr9 120413823 120413962 -3662210 + B1F SINE Alu 7 149 0 9 1503 538 273 159 50 chr9 120414392 120414631 -3661541 + ORR1E LTR MaLR 15 279 -80 9 1503 801 211 0 13 chr9 120414719 120414868 -3661304 - B1_Mur1 SINE Alu -1 148 2 9 1503 1173 69 0 14 chr9 120415216 120415363 -3660809 + B1_Mus2 SINE Alu 3 147 0 9 1503 621 124 0 0 chr9 120415367 120415464 -3660708 + (GA)n Simple_repeat Simple_repeat 2 98 0 9 1503 1601 195 85 11 chr9 120415549 120415901 -3660271 + RLTR1B LTR ERV1 135 512 0 9 1503 883 206 94 40 chr9 120416023 120416225 -3659947 + ID_B1 SINE B4 1 213 -11 9 1503 615 153 72 0 chr9 120416225 120416336 -3659836 + B1_Mur2 SINE Alu 30 148 -1 9 1503 243 304 160 23 chr9 120417181 120417356 -3658816 + LTR16C LTR ERVL 281 479 -10 9 1503 1413 73 5 15 chr9 120417682 120417877 -3658295 - B2_Mm1a SINE B2 0 193 1 9 1503 410 311 10 0 chr9 120418108 120418211 -3657961 + PB1D10 SINE Alu 2 105 -12 9 1503 360 282 121 8 chr9 120418410 120418542 -3657630 - B1_Mur2 SINE Alu -2 147 1 9 1503 761 228 106 0 chr9 120418730 120418919 -3657253 + ID_B1 SINE B4 12 220 -4 9 1503 371 330 138 20 chr9 120418926 120419205 -3656967 + MLT1G3 LTR MaLR 103 403 -188 9 1503 392 218 110 41 chr9 120419416 120419542 -3656630 - B4A SINE B4 -129 163 32 9 1503 328 301 96 54 chr9 120420316 120420555 -3655617 + ORR1E LTR MaLR 69 317 -42 9 1503 191 161 0 18 chr9 120420670 120420727 -3655445 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1503 1156 95 31 12 chr9 120420732 120420916 -3655256 - B2_Mm2 SINE B2 -13 203 1 9 1503 717 194 60 56 chr9 120420978 120421165 -3655007 + B3 SINE B2 5 196 -2 9 1503 2198 118 5 104 chr9 120421263 120421668 -3654504 + RLTR8 LTR ERVK 1 365 0 9 1503 282 286 56 108 chr9 120421910 120421994 -3654178 + L1M5 LINE L1 3753 3844 -2302 9 1503 3067 92 104 43 chr9 120421994 120422483 -3653689 - MURVY-LTR LTR ERV1 0 519 1 9 1503 282 289 57 108 chr9 120422483 120422682 -3653490 + L1M5 LINE L1 3845 4023 -2123 9 1503 356 269 10 31 chr9 120422699 120422795 -3653377 + B1_Mus2 SINE Alu 3 96 -51 9 1503 254 164 0 12 chr9 120423149 120423206 -3652966 + PB1D7 SINE Alu 78 143 -6 9 1503 800 210 29 30 chr9 120423321 120423494 -3652678 + B3 SINE B2 1 172 -44 9 1503 817 19 19 0 chr9 120423494 120423601 -3652571 + (CA)n Simple_repeat Simple_repeat 2 110 0 9 1503 567 242 10 99 chr9 120423601 120423629 -3652543 + B2_Mm2 SINE B2 158 184 -11 9 1503 731 236 29 0 chr9 120423629 120423769 -3652403 + B1_Mur1 SINE Alu 6 149 0 9 1503 685 82 246 0 chr9 120423777 120423887 -3652285 + B1_Mus1 SINE Alu 1 137 -11 9 1503 252 0 0 0 chr9 120423887 120423915 -3652257 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1503 183 42 0 0 chr9 120423918 120423942 -3652230 + (GA)n Simple_repeat Simple_repeat 1 24 0 9 1503 410 185 24 24 chr9 120424167 120424250 -3651922 + PB1D10 SINE Alu 15 97 -20 9 1503 1169 44 7 0 chr9 120424282 120424418 -3651754 + B1_Mus1 SINE Alu 3 139 -9 9 1503 182 105 0 26 chr9 120424433 120424472 -3651700 + (CAAAAA)n Simple_repeat Simple_repeat 1 38 0 9 1503 295 235 13 64 chr9 120424696 120424793 -3651379 + PB1D10 SINE Alu 36 120 0 9 1503 262 266 38 0 chr9 120424796 120424875 -3651297 + ID4_ SINE ID 2 83 0 9 1503 22 0 0 0 chr9 120424888 120424910 -3651262 + AT_rich Low_complexity Low_complexity 1 22 0 9 1503 515 189 39 47 chr9 120425359 120425487 -3650685 + B1F SINE Alu 5 131 -18 9 1503 896 127 335 0 chr9 120426340 120426498 -3649674 + B3 SINE B2 1 211 -5 9 1503 455 150 2 2 chr9 120426527 120426606 -3649566 + B1_Mur4 SINE Alu 1 79 -68 9 1503 351 0 0 0 chr9 120426912 120426951 -3649221 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1503 183 42 0 0 chr9 120427127 120427151 -3649021 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1503 634 235 15 8 chr9 120427286 120427419 -3648753 - ID_B1 SINE B4 -2 222 89 9 1503 1462 78 0 20 chr9 120427494 120427691 -3648481 + B2_Mm2 SINE B2 2 194 -1 9 1503 816 150 24 6 chr9 120427693 120427861 -3648311 + GA-rich Low_complexity Low_complexity 3 173 0 9 1503 234 86 0 28 chr9 120427861 120427897 -3648275 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 9 1503 743 240 91 0 chr9 120428160 120428335 -3647837 - B4A SINE B4 -94 198 8 9 1503 544 149 240 0 chr9 120428368 120428489 -3647683 - B1_Mus1 SINE Alu 0 150 1 9 1503 1275 61 75 32 chr9 120429259 120429445 -3646727 + B2_Mm2 SINE B2 2 195 0 9 1503 217 0 0 57 chr9 120430081 120430116 -3646056 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 9 1503 721 307 83 77 chr9 120430121 120430612 -3645560 - RMER5 LTR ERV1 -9 525 32 9 1503 468 322 98 0 chr9 120430703 120430846 -3645326 + RSINE1 SINE B4 2 158 -7 9 1503 2553 57 3 0 chr9 120433058 120433376 -3642796 + ORR1A2 LTR MaLR 1 319 -8 9 1503 682 271 39 15 chr9 120433440 120433601 -3642571 + B3 SINE B2 1 166 -50 9 1503 387 0 0 0 chr9 120433601 120433644 -3642528 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1503 682 271 39 15 chr9 120433644 120433688 -3642484 + B3 SINE B2 167 211 -5 9 1503 1013 294 46 22 chr9 120433709 120434126 -3642046 + L1MA4A LINE L1 5512 5938 -365 9 1503 369 222 231 0 chr9 120435238 120435346 -3640826 - B1_Mur3 SINE Alu -3 146 14 9 1503 321 318 0 22 chr9 120435429 120435519 -3640653 - RSINE1 SINE B4 -11 154 67 9 1503 503 165 0 12 chr9 120435510 120435596 -3640576 - MTD LTR MaLR -320 99 15 9 1503 350 185 22 29 chr9 120435618 120435726 -3640446 + (CA)n Simple_repeat Simple_repeat 1 109 0 9 1503 1452 79 5 0 chr9 120435726 120435915 -3640257 - B2_Mm1t SINE B2 -3 190 1 9 1503 350 185 22 29 chr9 120435915 120435945 -3640227 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1503 542 15 0 15 chr9 120435977 120436045 -3640127 + (GAGAA)n Simple_repeat Simple_repeat 5 71 0 9 1503 302 0 26 0 chr9 120436866 120436904 -3639268 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1503 259 248 27 171 chr9 120437049 120437195 -3638977 + MER31B LTR ERV1 4 128 -338 9 1503 799 210 19 0 chr9 120437246 120437403 -3638769 - B3 SINE B2 -56 160 1 9 1503 497 293 6 62 chr9 120437567 120437745 -3638427 - RCHARR1 DNA MER1_type -509 465 298 9 1503 617 206 177 0 chr9 120437758 120437899 -3638273 + B3 SINE B2 47 212 -4 9 1503 677 314 103 17 chr9 120438068 120438301 -3637871 - RCHARR1 DNA MER1_type -718 256 4 9 1503 396 279 113 20 chr9 120438327 120438477 -3637695 - LTR33A LTR ERVL -323 197 34 9 1503 999 267 73 45 chr9 120438566 120438896 -3637276 + MTD LTR MaLR 81 419 0 9 1503 662 257 49 119 chr9 120438924 120439150 -3637022 + Lx9 LINE L1 6089 6373 -1271 9 1503 288 0 0 0 chr9 120439150 120439182 -3636990 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1503 662 277 45 41 chr9 120439182 120439371 -3636801 + Lx9 LINE L1 6232 6560 -1084 9 1503 666 37 0 0 chr9 120439501 120439582 -3636590 + (TG)n Simple_repeat Simple_repeat 2 82 0 9 1503 1217 96 11 33 chr9 120440094 120440277 -3635895 + B2_Mm1t SINE B2 2 180 -13 9 1503 1235 43 0 0 chr9 120440277 120440416 -3635756 + B1_Mus1 SINE Alu 1 140 -8 9 1503 325 127 36 0 chr9 120440765 120440820 -3635352 + B3 SINE B2 59 115 -101 9 1503 237 297 38 38 chr9 120440970 120441075 -3635097 - L2 LINE L2 -904 2515 2411 9 1503 893 153 7 0 chr9 120441478 120441622 -3634550 - B1_Mus2 SINE Alu 0 147 3 9 1503 1888 148 27 21 chr9 120441684 120442015 -3634157 - ORR1B1 LTR MaLR 0 394 62 9 1503 593 171 30 30 chr9 120442016 120442149 -3634023 - ORR1B1 LTR MaLR -259 135 3 9 1503 183 129 0 0 chr9 120442155 120442186 -3633986 + (C)n Simple_repeat Simple_repeat 1 31 0 9 1503 641 286 111 44 chr9 120442273 120442585 -3633587 - L1MA6 LINE L1 -387 5913 5575 9 1503 3999 165 122 51 chr9 120442585 120443503 -3632669 + RLTR13C1 LTR ERVK 1 983 0 9 1503 641 286 111 44 chr9 120443503 120443603 -3632569 - L1MA6 LINE L1 -726 5574 5473 9 1503 198 0 0 0 chr9 120443617 120443639 -3632533 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1503 716 180 21 35 chr9 120443646 120443790 -3632382 - B3A SINE B2 -56 142 1 1 1503 1459 89 0 5 chr9 120443815 120444008 -3632164 - B2_Mm2 SINE B2 -3 192 1 1 1503 216 0 0 0 chr9 120444018 120444042 -3632130 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1503 1237 54 0 0 chr9 120444042 120444189 -3631983 - B1_Mm SINE Alu 0 147 1 1 1503 463 283 67 29 chr9 120444202 120444598 -3631574 - L1MA6 LINE L1 -820 5480 5007 9 1503 482 242 66 29 chr9 120444877 120445013 -3631159 - RSINE1 SINE B4 0 165 25 1 1503 1207 50 0 0 chr9 120445411 120445552 -3630620 + B1_Mm SINE Alu 2 142 -5 1 1503 609 14 0 0 chr9 120445556 120445626 -3630546 + (GAA)n Simple_repeat Simple_repeat 2 71 0 1 1503 507 205 17 0 chr9 120446304 120446544 -3629628 + (CA)n Simple_repeat Simple_repeat 1 244 0 1 1503 1355 211 123 29 chr9 120446747 120447122 -3629050 + MTD LTR MaLR 10 419 0 1 1503 428 220 80 0 chr9 120447613 120447713 -3628459 + PB1D10 SINE Alu 7 114 -3 1 1503 378 255 109 45 chr9 120447744 120447891 -3628281 + B3A SINE B2 60 215 -1 1 1503 1965 147 108 14 chr9 120447973 120448325 -3627847 - ORR1B1 LTR MaLR -8 386 2 1 1503 553 267 73 17 chr9 120448470 120448759 -3627413 + MTEa LTR MaLR 20 379 0 1 1503 588 29 0 0 chr9 120449445 120449515 -3626657 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 1 1503 882 99 0 17 chr9 120450188 120450362 -3625810 + (TC)n Simple_repeat Simple_repeat 1 171 0 1 1503 432 0 0 0 chr9 120450362 120450410 -3625762 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1503 310 274 83 62 chr9 120451975 120452119 -3624053 - B1F SINE Alu -1 148 2 1 1503 793 126 94 0 chr9 120452259 120452386 -3623786 - B1_Mur1 SINE Alu -9 140 2 1 1503 1508 64 0 5 chr9 120452419 120452607 -3623565 + B2_Mm2 SINE B2 3 189 -6 1 1503 198 0 0 0 chr9 120452644 120452666 -3623506 + (CTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1503 431 100 0 14 chr9 120452954 120453025 -3623147 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1503 237 319 14 0 chr9 120453778 120453850 -3622322 - MER58C DNA MER1_type -5 210 138 1 1503 737 176 0 30 chr9 120454131 120454266 -3621906 - B1_Mur2 SINE Alu -1 148 18 1 1503 298 226 34 143 chr9 120454163 120454282 -3621890 - MT2B LTR ERVL -330 271 166 1 1503 947 214 0 53 chr9 120454290 120454497 -3621675 + B3A SINE B2 3 198 0 1 187 1779 175 47 108 chr9 120454985 120455413 -3620759 - MTD LTR MaLR 0 419 18 1 1504 264 271 43 0 chr9 120455636 120455706 -3620466 + MER115 DNA Tip100 123 195 -498 1 1504 376 280 66 36 chr9 120456603 120456740 -3619432 - MamGypLTR3 LTR Gypsy 0 839 699 1 1504 503 159 21 131 chr9 120457497 120457529 -3618643 + MT2B LTR ERVL 136 151 -450 1 1504 888 110 16 0 chr9 120457529 120457656 -3618516 + B1_Mur4 SINE Alu 1 129 -21 1 1504 252 220 19 65 chr9 120457570 120457677 -3618495 + RLTR25B LTR ERVK 442 543 -485 1 1504 525 247 36 48 chr9 120457694 120457860 -3618312 - RNLTR23 LTR ERVK 0 642 479 1 1504 208 156 0 0 chr9 120458154 120458186 -3617986 + T-rich Low_complexity Low_complexity 1 32 0 1 1504 1456 22 0 11 chr9 120458186 120458368 -3617804 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1504 379 102 14 28 chr9 120458368 120458393 -3617779 + (TCC)n Simple_repeat Simple_repeat 2 25 0 1 1504 1149 123 0 0 chr9 120458393 120458572 -3617600 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1504 379 102 14 28 chr9 120458572 120458617 -3617555 + (TCC)n Simple_repeat Simple_repeat 1 46 0 1 1504 564 218 27 0 chr9 120458617 120458727 -3617445 - PB1D9 SINE Alu -5 115 3 1 1504 1726 135 37 33 chr9 120458793 120459092 -3617080 - RLTR21 LTR ERVK 0 1572 1273 1 1504 2306 138 28 0 chr9 120459090 120459451 -3616721 - RLTR21 LTR ERVK -1201 371 1 1 1504 351 65 0 0 chr9 120459865 120459911 -3616261 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1504 1139 178 45 0 chr9 120460481 120460683 -3615489 + B3 SINE B2 6 216 0 1 1504 541 211 0 58 chr9 120460715 120460836 -3615336 + PB1D10 SINE Alu 1 114 -3 1 1504 234 231 31 0 chr9 120461032 120461060 -3615112 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1504 207 0 0 0 chr9 120461060 120461083 -3615089 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1504 234 231 31 0 chr9 120461083 120461119 -3615053 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1504 458 329 19 56 chr9 120461122 120461283 -3614889 - RSINE1 SINE B4 0 165 11 1 1504 377 287 65 0 chr9 120461293 120461401 -3614771 - PB1D7 SINE Alu -5 115 1 1 1504 380 258 0 41 chr9 120461429 120461526 -3614646 - ID_B1 SINE B4 -1 223 131 1 1504 186 250 203 14 chr9 120462155 120462224 -3613948 - MER5B DNA MER1_type -92 86 5 1 1504 414 41 0 7 chr9 120462329 120462397 -3613775 + B1_Mus2 SINE Alu 52 149 0 1 1504 1511 90 148 142 chr9 120462469 120462553 -3613619 - ORR1A2 LTR MaLR 0 327 285 1 1504 1014 82 75 0 chr9 120462553 120462687 -3613485 - B1_Mus1 SINE Alu 0 148 5 1 1504 1511 90 148 142 chr9 120462687 120462927 -3613245 - ORR1A2 LTR MaLR -43 284 1 1 1504 474 70 0 0 chr9 120463672 120463743 -3612429 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1504 541 340 16 106 chr9 120464188 120464293 -3611879 - B4 SINE B4 -1 291 203 1 1504 968 124 0 22 chr9 120464293 120464475 -3611697 + (TCC)n Simple_repeat Simple_repeat 1 178 0 1 1504 541 340 16 106 chr9 120464475 120464681 -3611491 - B4 SINE B4 -90 202 8 1 1504 600 180 105 38 chr9 120465450 120465583 -3610589 - B1F SINE Alu -1 148 7 1 1504 573 15 0 0 chr9 120465586 120465652 -3610520 + (TTTTG)n Simple_repeat Simple_repeat 1 66 0 1 1504 1075 97 0 0 chr9 120465652 120465786 -3610386 - B1_Mus1 SINE Alu -13 135 2 1 1504 1377 158 9 5 chr9 120465807 120466030 -3610142 - URR1B DNA MER1_type -1 224 1 1 1504 580 301 30 25 chr9 120467892 120467968 -3608204 + ID SINE ID 3 79 -145 1 1504 818 181 0 0 chr9 120467968 120468095 -3608077 + B1_Mur1 SINE Alu 2 128 -21 1 1504 504 246 127 0 chr9 120468094 120468220 -3607952 + B4 SINE B4 82 223 -69 1 1504 1219 105 6 6 chr9 120468234 120468407 -3607765 + B2_Mm1a SINE B2 2 174 -19 1 1504 188 0 74 0 chr9 120468437 120468464 -3607708 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1504 813 147 33 47 chr9 120468476 120468626 -3607546 + B1_Mur3 SINE Alu 2 149 0 1 1504 1148 80 0 0 chr9 120468630 120468767 -3607405 + B1_Mus2 SINE Alu 1 137 -10 1 1504 221 0 0 33 chr9 120468767 120468797 -3607375 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1504 768 238 56 34 chr9 120468812 120468990 -3607182 + B3 SINE B2 33 214 -2 1 1504 614 254 0 34 chr9 120468999 120469137 -3607035 + B1_Mur1 SINE Alu 2 137 -12 1 1504 279 54 0 0 chr9 120469137 120469174 -3606998 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1504 351 0 0 0 chr9 120469226 120469265 -3606907 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1504 318 132 0 36 chr9 120469268 120469323 -3606849 - B4A SINE B4 -238 54 2 1 1504 307 214 70 20 chr9 120469328 120469428 -3606744 + RCHARR1 DNA MER1_type 830 934 -40 1 1504 387 0 0 0 chr9 120469888 120469931 -3606241 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1504 477 0 0 0 chr9 120470203 120470256 -3605916 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1504 269 318 18 61 chr9 120470514 120470628 -3605544 - RMER4B LTR ERVK -470 115 7 1 1504 923 106 7 0 chr9 120471495 120471637 -3604535 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 1 1504 522 216 7 86 chr9 120471637 120471789 -3604383 - B1_Mur4 SINE Alu -10 140 1 1 1504 1173 62 14 0 chr9 120471908 120472053 -3604119 + B1_Mus1 SINE Alu 2 148 0 1 1504 912 83 14 7 chr9 120472159 120472304 -3603868 + (TAGA)n Simple_repeat Simple_repeat 4 149 0 1 1504 275 104 21 0 chr9 120472449 120472497 -3603675 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 1 1504 485 293 44 13 chr9 120472916 120473075 -3603097 + RSINE1 SINE B4 2 165 0 1 1504 22 56 0 0 chr9 120473096 120473132 -3603040 + AT_rich Low_complexity Low_complexity 1 36 0 1 1504 607 228 94 0 chr9 120473168 120473295 -3602877 - B1_Mur1 SINE Alu -6 143 5 1 1504 368 230 219 16 chr9 120473432 120473560 -3602612 + B4A SINE B4 71 224 -68 1 1504 571 140 43 0 chr9 120473463 120473573 -3602599 + PB1D10 SINE Alu 15 117 0 1 1504 1026 227 49 36 chr9 120473596 120473843 -3602329 + B4 SINE B4 42 291 -1 1 1504 396 0 0 0 chr9 120474117 120474161 -3602011 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1504 667 252 7 0 chr9 120474180 120474315 -3601857 + ID_B1 SINE B4 84 219 -5 1 1504 648 276 19 13 chr9 120474464 120474618 -3601554 + RSINE1 SINE B4 3 157 -8 1 1504 207 100 0 0 chr9 120474663 120474693 -3601479 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1504 376 313 136 20 chr9 120474693 120474892 -3601280 + L1M5 LINE L1 2275 2496 -3650 1 1504 686 173 102 8 chr9 120474901 120475029 -3601143 + B1_Mur1 SINE Alu 2 141 -8 1 1504 213 322 0 0 chr9 120475029 120475082 -3601090 + polypurine Low_complexity Low_complexity 8 60 0 1 1504 520 263 194 6 chr9 120476216 120476396 -3599776 - ID_B1 SINE B4 -8 216 3 1 1504 690 246 151 0 chr9 120477216 120477395 -3598777 + B3 SINE B2 1 206 -10 1 1504 221 198 0 12 chr9 120477911 120477993 -3598179 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1504 397 230 62 131 chr9 120478266 120478411 -3597761 - B4 SINE B4 -151 141 7 1 1504 1183 55 7 0 chr9 120478434 120478580 -3597592 - B1_Mus2 SINE Alu 0 147 1 1 1504 492 239 71 14 chr9 120478586 120478726 -3597446 - B1F SINE Alu -1 148 1 1 1504 471 233 0 64 chr9 120479244 120479354 -3596818 + B3 SINE B2 80 182 -34 1 1504 378 0 0 0 chr9 120479355 120479397 -3596775 + (TAAAA)n Simple_repeat Simple_repeat 5 46 0 1 1504 776 306 32 24 chr9 120479530 120479762 -3596410 + B4A SINE B4 20 253 -39 1 1504 390 229 42 0 chr9 120479762 120479868 -3596304 + MTC LTR MaLR 1 118 -301 1 1504 1264 79 0 6 chr9 120479903 120480069 -3596103 - B2_Mm2 SINE B2 -29 166 2 1 1504 439 213 34 85 chr9 120480082 120480200 -3595972 - PB1D9 SINE Alu -8 112 1 1 1504 375 243 131 0 chr9 120480307 120480414 -3595758 + B1F SINE Alu 22 142 -7 1 1504 280 276 68 11 chr9 120481640 120481728 -3594444 + PB1D10 SINE Alu 22 114 -3 1 1504 205 167 0 0 chr9 120483298 120483334 -3592838 + (CTG)n Simple_repeat Simple_repeat 2 37 0 1 1504 1041 77 28 7 chr9 120484381 120484524 -3591648 + B1_Mus2 SINE Alu 2 147 0 1 1504 264 77 0 0 chr9 120485405 120485444 -3590728 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1504 1102 69 21 0 chr9 120485444 120485588 -3590584 - B1_Mus1 SINE Alu -1 147 1 1 1504 210 352 0 0 chr9 120485671 120485725 -3590447 - B1F1 SINE Alu -93 56 3 1 1504 417 279 115 0 chr9 120485840 120485944 -3590228 - B3 SINE B2 -86 130 15 1 1504 379 216 23 0 chr9 120486931 120487019 -3589153 + 4.5SRNA scRNA scRNA 1 90 -4 1 1504 351 298 0 31 chr9 120487025 120487122 -3589050 + B3A SINE B2 29 122 -76 1 1504 666 269 34 0 chr9 120487279 120487428 -3588744 - RSINE1 SINE B4 0 165 12 1 1504 511 232 158 7 chr9 120487574 120487726 -3588446 - RCHARR1 DNA MER1_type -798 176 2 1 1504 2411 249 128 29 chr9 120487961 120488922 -3587250 + Lx8 LINE L1 6416 7471 -2 1 1504 243 292 19 0 chr9 120489274 120489380 -3586792 + MurSatRep1 Unknown Unknown 612 719 -1418 1 1504 206 239 0 27 chr9 120490331 120490404 -3585768 + C-rich Low_complexity Low_complexity 2 72 0 1 1504 402 164 0 0 chr9 120490405 120490472 -3585700 + B1_Mm SINE Alu 79 145 -2 1 1504 608 240 51 7 chr9 120490486 120490644 -3585528 - B3A SINE B2 -51 165 1 1 1504 243 0 0 0 chr9 120490838 120490865 -3585307 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1504 345 24 0 0 chr9 120490865 120490907 -3585265 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1504 1208 22 0 0 chr9 120490908 120491042 -3585130 - B1_Mus2 SINE Alu -12 135 2 1 1504 372 267 41 57 chr9 120492086 120492209 -3583963 + RSINE1 SINE B4 32 152 -13 1 1504 198 103 0 0 chr9 120492216 120492245 -3583927 + (CG)n Simple_repeat Simple_repeat 1 29 0 1 1504 318 115 0 0 chr9 120492245 120492296 -3583876 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1504 795 267 0 43 chr9 120492425 120492609 -3583563 - B3A SINE B2 -16 182 7 1 1504 899 65 8 16 chr9 120492940 120493066 -3583106 - B1_Mus1 SINE Alu 0 148 24 1 1504 783 101 0 0 chr9 120493063 120493172 -3583000 - B2_Mm2 SINE B2 -84 111 3 1 1504 234 0 0 0 chr9 120493501 120493527 -3582645 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1 1504 1086 98 0 0 chr9 120493819 120493962 -3582210 - B1_Mus2 SINE Alu 0 147 5 1 1504 716 247 52 7 chr9 120494346 120494501 -3581671 + RSINE1 SINE B4 2 163 -2 1 1504 795 211 0 0 chr9 120494527 120494806 -3581366 + (CA)n Simple_repeat Simple_repeat 1 279 0 1 1504 1142 83 0 0 chr9 120494826 120494970 -3581202 + B1_Mus1 SINE Alu 5 148 0 1 1504 867 113 64 76 chr9 120494971 120495143 -3581029 - B2_Mm2 SINE B2 -25 170 1 1 1504 228 354 16 39 chr9 120496265 120496447 -3579725 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 1 1504 190 206 14 14 chr9 120496511 120496580 -3579592 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 1 1504 259 208 0 40 chr9 120496696 120496746 -3579426 - RSINE1 SINE B4 0 165 118 1 1504 246 298 0 0 chr9 120496745 120496792 -3579380 - RSINE1 SINE B4 -1 164 118 1 1504 246 298 0 0 chr9 120496791 120496838 -3579334 - RSINE1 SINE B4 -1 164 118 1 1504 253 292 0 0 chr9 120496838 120496886 -3579286 - RSINE1 SINE B4 0 165 118 1 1504 477 282 89 124 chr9 120496885 120497176 -3578996 - B4A SINE B4 -1 291 11 1 1504 1317 93 11 0 chr9 120497894 120498076 -3578096 - B2_Mm1t SINE B2 -8 185 2 1 1504 420 203 0 0 chr9 120498228 120498297 -3577875 - B1_Mur1 SINE Alu -11 138 70 1 1504 361 141 40 40 chr9 120498297 120498371 -3577801 - RSINE1 SINE B4 -87 78 5 1 1504 486 309 1 0 chr9 120498371 120498522 -3577650 + L1MA4 LINE L1 5788 5939 -232 1 1504 705 266 68 36 chr9 120498534 120498753 -3577419 + B4A SINE B4 5 230 -62 1 1504 353 109 18 0 chr9 120498753 120498808 -3577364 + B3A SINE B2 1 56 -142 1 1504 471 181 0 24 chr9 120498872 120498957 -3577215 + B4A SINE B4 210 292 0 1 1504 585 144 0 0 chr9 120498960 120499064 -3577108 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 1504 315 0 0 0 chr9 120499113 120499148 -3577024 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1504 281 26 0 26 chr9 120499305 120499344 -3576828 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1504 1227 36 0 0 chr9 120499347 120499486 -3576686 - B1_Mus2 SINE Alu -6 141 3 1 1504 1268 93 22 0 chr9 120499645 120499827 -3576345 + B2_Mm1t SINE B2 8 193 0 1 1504 294 29 0 0 chr9 120500232 120500267 -3575905 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 1 1504 406 299 216 0 chr9 120500268 120500402 -3575770 - RSINE1 SINE B4 0 165 3 2 1504 408 274 145 40 chr9 120500697 120500849 -3575323 + B3 SINE B2 5 172 -44 3 1504 452 315 60 115 chr9 120500889 120501094 -3575078 + MLT1F2 LTR MaLR 245 513 -141 4 1504 1296 210 31 124 chr9 120501094 120501512 -3574660 - MTE2a LTR MaLR 0 379 1 5 1504 452 324 61 112 chr9 120501512 120501625 -3574547 + MLT1F2 LTR MaLR 410 625 -29 4 1504 234 278 0 129 chr9 120501839 120502033 -3574139 - Lx8 LINE L1 -3 7470 7302 6 1504 263 288 0 0 chr9 120502125 120502191 -3573981 + CT-rich Low_complexity Low_complexity 2 67 0 7 1504 445 146 77 22 chr9 120502227 120502318 -3573854 - B1_Mur1 SINE Alu 0 149 54 8 1504 828 250 127 6 chr9 120502331 120502661 -3573511 - Lx8 LINE L1 -457 7016 6647 6 1504 303 164 43 16 chr9 120502687 120502780 -3573392 - L1M5 LINE L1 -681 5481 5387 9 1504 246 305 21 21 chr9 120503120 120503217 -3572955 + (CATG)n Simple_repeat Simple_repeat 4 100 0 1 1504 387 0 0 0 chr9 120503227 120503270 -3572902 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1504 253 281 0 152 chr9 120503367 120503472 -3572700 - B4 SINE B4 -119 173 85 1 1504 901 142 30 0 chr9 120503500 120503634 -3572538 - B1_Mur3 SINE Alu -11 138 1 1 1504 306 0 0 0 chr9 120504393 120504427 -3571745 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1504 810 179 0 7 chr9 120504435 120504570 -3571602 - RSINE1 SINE B4 -31 134 1 1 1504 799 242 55 32 chr9 120506221 120506439 -3569733 + LTRIS4 LTR ERV1 285 507 0 1 1504 378 0 0 0 chr9 120506493 120506535 -3569637 + (TAAAA)n Simple_repeat Simple_repeat 5 46 0 1 1504 225 0 0 0 chr9 120506558 120506583 -3569589 + (CCA)n Simple_repeat Simple_repeat 3 27 0 1 1504 5372 160 37 59 chr9 120506615 120507787 -3568385 + ETnERV2-int LTR ERVK 1046 2191 -5215 1 1504 9085 182 76 60 chr9 120507888 120508663 -3567509 + RMER16-int LTR ERVK 1415 2591 -4815 2 1504 193 317 12 47 chr9 120508663 120508749 -3567423 - L2 LINE L2 -541 2878 2796 2 1504 9085 182 76 60 chr9 120508749 120509425 -3566747 + RMER16-int LTR ERVK 2592 3621 -3785 2 1504 1604 26 0 30 chr9 120509425 120509622 -3566550 + B2_Mm1a SINE B2 2 192 -1 2 1504 9085 143 47 27 chr9 120509622 120509937 -3566235 + RMER16-int LTR ERVK 2555 2858 -2548 2 1504 417 39 0 0 chr9 120509937 120509988 -3566184 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1504 9085 143 47 27 chr9 120509988 120510673 -3565499 + RMER16-int LTR ERVK 2859 3557 -1849 2 1504 456 19 0 0 chr9 120512985 120513038 -3563134 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1504 219 114 0 0 chr9 120513342 120513377 -3562795 + (CCCCCG)n Simple_repeat Simple_repeat 2 36 0 2 1504 544 293 75 0 chr9 120513801 120513934 -3562238 - RSINE1 SINE B4 -22 143 1 2 1504 477 172 58 0 chr9 120513934 120514021 -3562151 - ID_B1 SINE B4 -4 220 129 2 1504 430 332 49 84 chr9 120514172 120514435 -3561737 - MLT1B LTR MaLR -39 351 98 2 1504 298 283 38 138 chr9 120514647 120514707 -3561465 - B4 SINE B4 -2 290 228 2 1504 3971 80 10 0 chr9 120514707 120515219 -3560953 + L1_Mus1 LINE L1 6051 6567 0 3 1504 298 283 38 138 chr9 120515219 120515318 -3560854 - B4 SINE B4 -65 227 148 2 1504 720 64 0 0 chr9 120515362 120515456 -3560716 + (TTCTC)n Simple_repeat Simple_repeat 1 94 0 3 1504 1041 158 15 61 chr9 120515682 120515722 -3560450 + RMER4A LTR ERVK 6 39 -427 3 1504 1713 21 0 0 chr9 120515722 120515914 -3560258 + B2_Mm1a SINE B2 2 193 0 3 1504 1041 158 15 61 chr9 120515914 120516069 -3560103 + RMER4A LTR ERVK 40 192 -274 3 1504 256 100 0 0 chr9 120516069 120516109 -3560063 + MurERV4-int LTR ERVK 22 61 -5199 3 1504 547 93 5 58 chr9 120516109 120516217 -3559955 + B1_Mus2 SINE Alu 45 149 0 3 1504 3985 151 57 44 chr9 120516220 120516272 -3559900 + MurERV4-int LTR ERVK 127 178 -5082 3 1504 195 42 0 0 chr9 120516272 120516296 -3559876 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1504 3985 151 57 44 chr9 120516296 120516453 -3559719 + MurERV4-int LTR ERVK 179 329 -4931 3 1504 1549 58 16 0 chr9 120516453 120516642 -3559530 - B2_Mm2 SINE B2 -3 192 1 3 1504 3985 151 57 44 chr9 120516642 120517232 -3558940 + MurERV4-int LTR ERVK 330 938 -4322 3 1504 2908 207 58 16 chr9 120517224 120517302 -3558870 + MurERV4-int LTR ERVK 1267 1350 -3910 3 1504 2181 183 15 8 chr9 120517302 120517693 -3558479 - ORR1B1 LTR MaLR 0 394 1 3 1504 2908 207 58 16 chr9 120517693 120518251 -3557921 + MurERV4-int LTR ERVK 1351 1930 -3330 3 1504 684 124 8 47 chr9 120518271 120518398 -3557774 + URR1B DNA MER1_type 104 225 0 3 1504 1267 264 171 7 chr9 120518598 120519154 -3557018 - Lx8 LINE L1 -3 7470 6824 4 1504 398 198 438 0 chr9 120519229 120519325 -3556847 - URR1B DNA MER1_type -86 139 2 4 1504 282 272 35 49 chr9 120519752 120519895 -3556277 + L1M2 LINE L1 4249 4389 -1754 4 1504 534 31 0 0 chr9 120519992 120520056 -3556116 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1504 1116 159 80 19 chr9 120520563 120520775 -3555397 - URR1B DNA MER1_type 0 225 1 4 1504 604 295 10 69 chr9 120520887 120521091 -3555081 - B3A SINE B2 0 198 7 4 1504 760 256 51 9 chr9 120521084 120521301 -3554871 - B4A SINE B4 -60 232 7 4 1504 572 305 43 43 chr9 120522126 120522311 -3553861 - RMER30 DNA MER1_type -17 185 1 4 1504 415 206 43 0 chr9 120522340 120522432 -3553740 - ID_B1 SINE B4 0 224 129 4 1504 1185 220 69 118 chr9 120522445 120522534 -3553638 + MTE2a LTR MaLR 1 71 -308 4 1504 531 69 0 0 chr9 120522534 120522606 -3553566 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1504 1185 220 69 118 chr9 120522606 120522907 -3553265 + MTE2a LTR MaLR 72 372 -7 4 1504 322 259 12 0 chr9 120522934 120523012 -3553160 - PB1D9 SINE Alu -52 97 14 5 1504 663 13 0 0 chr9 120523041 120523117 -3553055 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 5 1504 709 197 8 0 chr9 120523117 120523239 -3552933 - B1F SINE Alu -26 123 1 5 1504 454 313 7 29 chr9 120523120 120523258 -3552914 - ID_B1 SINE B4 -26 198 64 5 1504 685 229 94 13 chr9 120523541 120523700 -3552472 + MTC LTR MaLR 1 172 -247 5 1504 871 202 102 34 chr9 120523695 120523735 -3552437 - URR1B DNA MER1_type -5 220 181 5 1504 3550 31 51 0 chr9 120523735 120523939 -3552233 - RLTR10C LTR ERVK 0 436 233 5 1504 378 0 0 0 chr9 120523939 120523981 -3552191 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1504 3550 31 51 0 chr9 120523981 120524191 -3551981 - RLTR10C LTR ERVK -204 232 2 5 1504 871 202 102 34 chr9 120524191 120524355 -3551817 - URR1B DNA MER1_type -45 180 2 5 1504 1349 203 33 14 chr9 120524355 120524596 -3551576 + MTC LTR MaLR 168 413 -8 5 1504 229 227 79 13 chr9 120524659 120524735 -3551437 + (CATG)n Simple_repeat Simple_repeat 3 83 0 5 1504 987 129 7 13 chr9 120524796 120524933 -3551239 + B1_Mus1 SINE Alu 1 138 -10 6 1504 302 0 26 0 chr9 120524933 120524971 -3551201 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1504 987 129 7 13 chr9 120524971 120524982 -3551190 + B1_Mus1 SINE Alu 139 148 0 6 1504 266 326 35 0 chr9 120524984 120525070 -3551102 - MTEb LTR MaLR -59 320 232 6 1504 711 274 59 14 chr9 120525122 120525344 -3550828 - MTEb LTR MaLR -141 238 7 6 1504 770 226 181 0 chr9 120525702 120525879 -3550293 + B3 SINE B2 1 209 -7 6 1504 611 273 0 71 chr9 120525985 120526182 -3549990 - B3A SINE B2 -1 197 15 6 1504 232 211 58 0 chr9 120527687 120527739 -3548433 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 6 1504 218 159 75 14 chr9 120527805 120527952 -3548220 + (TCTA)n Simple_repeat Simple_repeat 2 157 0 6 1504 189 171 0 0 chr9 120528003 120528038 -3548134 + (CATG)n Simple_repeat Simple_repeat 2 36 0 6 1504 192 200 57 0 chr9 120528038 120528143 -3548029 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 6 1504 432 0 0 0 chr9 120529809 120529857 -3546315 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1504 546 54 0 0 chr9 120530651 120530725 -3545447 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 1504 453 245 124 28 chr9 120530726 120530909 -3545263 - B4 SINE B4 -58 234 44 7 1504 1622 224 16 85 chr9 120530898 120531120 -3545052 - MTD LTR MaLR -15 404 201 7 1504 1596 47 5 0 chr9 120531120 120531312 -3544860 - B2_Mm1a SINE B2 0 193 1 7 1504 1622 224 16 85 chr9 120531312 120531523 -3544649 - MTD LTR MaLR -219 200 1 7 1504 291 194 65 0 chr9 120531523 120531585 -3544587 - B4 SINE B4 -225 67 2 7 1504 1798 261 160 8 chr9 120531604 120532130 -3544042 - MTE-int LTR MaLR -974 606 1 7 1504 357 309 27 9 chr9 120532148 120532259 -3543913 - MTEa LTR MaLR -57 322 210 7 1504 311 167 0 0 chr9 120532249 120532303 -3543869 - MTEa LTR MaLR -131 248 195 7 1504 1127 273 119 44 chr9 120532307 120532743 -3543429 + MTEb-int LTR MaLR 1110 1578 -2 7 1504 1596 260 25 0 chr9 120532750 120533108 -3543064 + MTEb LTR MaLR 6 372 -7 7 1504 292 335 45 77 chr9 120533154 120533400 -3542772 + MLT1H LTR MaLR 127 364 -185 7 1504 395 285 66 12 chr9 120534105 120534396 -3541776 - L1M2 LINE L1 -3685 2864 2472 7 1504 2790 156 47 6 chr9 120534461 120534933 -3541239 + RLTR19 LTR ERVK 9 499 0 7 1504 825 78 373 0 chr9 120535005 120535147 -3541025 - B2_Mm2 SINE B2 0 195 1 8 1504 181 0 0 65 chr9 120535239 120535270 -3540902 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1504 573 107 154 43 chr9 120535270 120535379 -3540793 - B1_Mur3 SINE Alu -25 124 2 8 1504 471 278 35 23 chr9 120535475 120535648 -3540524 - L1_Mur3 LINE L1 -4012 1868 1694 8 1504 3188 138 106 60 chr9 120535662 120536097 -3540075 - RLTR33 LTR ERVK -34 644 180 8 1504 1199 88 0 0 chr9 120536097 120536244 -3539928 - B1_Mus2 SINE Alu 0 147 1 8 1504 3188 170 122 52 chr9 120536244 120536484 -3539688 - RLTR33 LTR ERVK -382 333 1 8 1504 516 251 11 2 chr9 120536568 120536751 -3539421 - L1_Mur3 LINE L1 -4219 1658 1472 8 1504 279 303 129 20 chr9 120536753 120536854 -3539318 - LTR16C LTR ERVL -295 194 83 8 1504 468 290 0 0 chr9 120537524 120537624 -3538548 - PB1D10 SINE Alu -15 102 3 8 1504 354 169 0 0 chr9 120538233 120538298 -3537874 + CT-rich Low_complexity Low_complexity 3 67 0 8 1504 2321 124 71 40 chr9 120539879 120540202 -3535970 + ORR1B1 LTR MaLR 5 345 -49 8 1504 1151 57 0 14 chr9 120540202 120540338 -3535834 + B1_Mm SINE Alu 2 137 -10 9 1504 249 0 23 47 chr9 120540338 120540381 -3535791 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 9 1504 2321 124 71 40 chr9 120540387 120540441 -3535731 + ORR1B1 LTR MaLR 346 394 0 8 1504 2102 133 85 0 chr9 120540455 120540786 -3535386 + ORR1B2 LTR MaLR 1 359 -8 9 1504 1002 275 96 69 chr9 120540867 120541285 -3534887 - MT2A LTR ERVL -102 431 3 9 1504 226 338 101 13 chr9 120542035 120542194 -3533978 + L3b LINE CR1 238 410 -72 9 1504 300 302 34 34 chr9 120542413 120542502 -3533670 - RSINE1 SINE B4 -9 156 68 9 1504 218 250 169 42 chr9 120542648 120542719 -3533453 - ID2 SINE ID 0 83 4 9 1504 805 241 50 32 chr9 120542838 120543057 -3533115 + B4 SINE B4 8 230 -62 9 1504 2089 128 44 41 chr9 120543098 120543464 -3532708 - IAPLTR1_Mm LTR ERVK 0 367 1 9 1504 55173 16 5 14 chr9 120543464 120549996 -3526176 - IAPEz-int LTR ERVK 0 6481 8 9 1504 2089 128 44 41 chr9 120549996 120550362 -3525810 - IAPLTR1_Mm LTR ERVK 0 367 1 9 1504 1482 69 0 5 chr9 120550362 120550552 -3525620 + B2_Mm2 SINE B2 7 195 0 9 1504 308 64 0 21 chr9 120550552 120550600 -3525572 + (GAAA)n Simple_repeat Simple_repeat 4 50 0 1 1504 1987 147 25 23 chr9 120550600 120550954 -3525218 + ORR1B2 LTR MaLR 13 367 0 1 1504 320 0 0 24 chr9 120550954 120550995 -3525177 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1504 3016 152 51 34 chr9 120551366 120551919 -3524253 + RMER13B LTR ERVK 1 562 -346 1 1504 397 303 68 0 chr9 120552061 120552193 -3523979 + B4A SINE B4 138 278 -14 1 1504 223 196 19 38 chr9 120552289 120552342 -3523830 + L2c LINE L2 3331 3382 -5 1 1504 184 139 27 27 chr9 120552373 120552410 -3523762 + L2b LINE L2 3333 3369 -6 1 1504 475 216 0 22 chr9 120552719 120552809 -3523363 + B4 SINE B4 2 89 -203 1 1504 733 270 6 0 chr9 120552809 120552972 -3523200 + RSINE1 SINE B4 1 164 -1 1 1504 385 267 97 62 chr9 120553063 120553207 -3522965 + B4A SINE B4 133 281 -11 1 1504 1244 67 55 22 chr9 120553523 120553706 -3522466 - B2_Mm2 SINE B2 0 195 7 1 1504 960 287 40 7 chr9 120553721 120553998 -3522174 + RCHARR1 DNA MER1_type 7 292 -682 1 1504 777 190 0 16 chr9 120554008 120554190 -3521982 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1504 588 236 8 0 chr9 120554209 120554332 -3521840 + RCHARR1 DNA MER1_type 346 469 -505 1 1504 568 262 6 101 chr9 120554342 120554520 -3521652 - B4A SINE B4 -129 163 3 1 1504 562 276 40 126 chr9 120554954 120555153 -3521019 + B3A SINE B2 1 182 -16 1 1504 443 345 6 0 chr9 120555173 120555350 -3520822 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1504 339 192 0 0 chr9 120556195 120556268 -3519904 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1504 715 221 69 15 chr9 120557205 120557407 -3518765 - B3 SINE B2 0 216 4 1 1504 440 295 32 39 chr9 120557610 120557743 -3518429 + RSINE1 SINE B4 11 144 -21 1 1504 366 23 0 0 chr9 120557743 120557786 -3518386 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1504 440 295 32 39 chr9 120557786 120557807 -3518365 + RSINE1 SINE B4 145 164 -1 1 1504 367 257 107 45 chr9 120557866 120558090 -3518082 + L1MD2 LINE L1 5064 5301 -845 1 1504 642 230 7 41 chr9 120558240 120558385 -3517787 + ID_B1 SINE B4 84 223 -1 1 1504 388 286 96 14 chr9 120558463 120558683 -3517489 + L1MD2 LINE L1 5892 6129 -230 1 1504 705 174 0 0 chr9 120558984 120559145 -3517027 + CT-rich Low_complexity Low_complexity 2 162 0 1 1504 1238 82 0 0 chr9 120559207 120559365 -3516807 + B2_Mm2 SINE B2 3 160 -35 1 1504 531 0 0 0 chr9 120559367 120559426 -3516746 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 1 1504 614 219 15 15 chr9 120559491 120559621 -3516551 - B3 SINE B2 -84 132 3 1 1504 437 110 20 20 chr9 120560089 120560137 -3516035 + (TCC)n Simple_repeat Simple_repeat 1 48 0 1 1504 1072 161 32 11 chr9 120560137 120560325 -3515847 - B2_Mm2 SINE B2 -2 193 2 1 1504 437 110 20 20 chr9 120560325 120560378 -3515794 + (TCC)n Simple_repeat Simple_repeat 1 54 0 1 1504 838 203 115 6 chr9 120560378 120560561 -3515611 - ID_B1 SINE B4 -6 218 16 1 1504 211 273 0 0 chr9 120560898 120560942 -3515230 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1504 339 294 0 0 chr9 120560956 120561136 -3515036 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1504 357 247 6 22 chr9 120561158 120561336 -3514836 + (TATG)n Simple_repeat Simple_repeat 4 178 0 1 1504 440 303 3 0 chr9 120561341 120561644 -3514528 + (TG)n Simple_repeat Simple_repeat 1 303 0 1 1504 264 266 0 0 chr9 120561946 120562010 -3514162 - ID4_ SINE ID -16 67 4 1 1504 182 296 54 40 chr9 120562138 120562212 -3513960 + MIRm SINE MIR 94 168 -108 1 1504 1423 161 255 84 chr9 120562917 120563298 -3512874 - RLTR41 LTR ERV1 0 446 1 1 1504 332 292 17 50 chr9 120563361 120563480 -3512692 + MER5A1 DNA MER1_type 33 147 -19 1 1504 982 247 45 55 chr9 120563513 120563804 -3512368 - B4 SINE B4 -4 288 1 1 1504 339 231 42 42 chr9 120563840 120563935 -3512237 - RSINE1 SINE B4 0 165 71 1 1504 1416 148 76 189 chr9 120564019 120564296 -3511876 - RMER10B LTR ERVL 0 398 118 1 1504 1186 43 0 0 chr9 120564296 120564435 -3511737 + B1_Mus1 SINE Alu 1 139 -9 1 1504 1416 148 76 189 chr9 120564435 120564606 -3511566 - RMER10B LTR ERVL -281 117 1 1 1504 1167 43 0 0 chr9 120564804 120564943 -3511229 - B1_Mus1 SINE Alu -9 139 1 1 1504 378 211 135 10 chr9 120565050 120565146 -3511026 - B1_Mur3 SINE Alu -2 147 40 1 1504 1132 223 70 8 chr9 120565542 120565800 -3510372 + B4 SINE B4 3 276 -16 1 1504 21 0 0 0 chr9 120566423 120566444 -3509728 + GC_rich Low_complexity Low_complexity 1 21 0 1 1504 815 207 128 0 chr9 120566482 120566670 -3509502 + B3 SINE B2 1 212 -4 1 1504 504 306 96 34 chr9 120566711 120566998 -3509174 - B4A SINE B4 -22 270 3 1 1504 367 201 23 29 chr9 120567333 120567507 -3508665 + (TCTCTG)n Simple_repeat Simple_repeat 4 176 0 1 1504 596 94 74 12 chr9 120567544 120567706 -3508466 + (TCTCTG)n Simple_repeat Simple_repeat 2 173 0 1 1504 260 346 0 0 chr9 120568892 120568970 -3507202 + Charlie12 DNA MER1_type 3 80 -2793 1 1504 1307 79 56 0 chr9 120568970 120569148 -3507024 - B2_Mm1a SINE B2 -5 188 1 1 1504 239 291 0 173 chr9 120569148 120569203 -3506969 - RMER30 DNA MER1_type -73 129 89 1 1504 726 252 83 8 chr9 120569564 120569750 -3506422 + ID_B1 SINE B4 10 217 -75 1 1504 269 26 0 26 chr9 120569750 120569789 -3506383 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1504 305 301 149 68 chr9 120569789 120569837 -3506335 + B4 SINE B4 218 263 -29 1 1504 273 83 0 100 chr9 120571588 120571668 -3504504 + G-rich Low_complexity Low_complexity 5 76 0 1 1504 246 242 16 0 chr9 120571676 120571738 -3504434 - L1MC4a LINE L1 -1143 6739 6677 1 1504 1219 81 116 0 chr9 120571745 120571918 -3504254 + B2_Mm1a SINE B2 1 193 0 1 1504 770 206 13 27 chr9 120571944 120572094 -3504078 + B1_Mur1 SINE Alu 2 149 0 1 1504 251 259 0 0 chr9 120572218 120572272 -3503900 + CT-rich Low_complexity Low_complexity 4 57 0 1 1504 846 124 13 7 chr9 120572887 120573041 -3503131 + (GAA)n Simple_repeat Simple_repeat 2 156 0 1 1504 639 71 0 0 chr9 120573166 120573251 -3502921 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 1504 541 279 164 20 chr9 120573676 120573965 -3502207 - MTE2b LTR MaLR -48 331 1 1 1504 602 185 0 11 chr9 120574039 120574219 -3501953 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1504 507 206 0 0 chr9 120574258 120574438 -3501734 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1504 336 211 0 0 chr9 120574589 120574731 -3501441 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1504 261 230 0 0 chr9 120574763 120574889 -3501283 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 1504 320 303 125 0 chr9 120575196 120575348 -3500824 + Charlie2b DNA MER1_type 2157 2327 -455 1 1504 1523 204 113 39 chr9 120575390 120575772 -3500400 + MTD LTR MaLR 8 417 -2 1 1504 527 240 12 96 chr9 120575812 120575978 -3500194 - RSINE1 SINE B4 0 165 14 1 1504 343 200 29 0 chr9 120576015 120576085 -3500087 - PB1D7 SINE Alu -48 72 1 1 1504 231 262 0 58 chr9 120576025 120576094 -3500078 - B4 SINE B4 -147 145 81 1 1504 822 291 96 29 chr9 120576102 120576520 -3499652 + Charlie2b DNA MER1_type 2337 2782 0 1 1504 3202 123 257 20 chr9 120576959 120577554 -3498618 - RMER19A LTR ERVK -1 736 1 1 1504 602 138 106 0 chr9 120577771 120577865 -3498307 + B3 SINE B2 27 130 -86 1 1504 468 0 0 0 chr9 120578279 120578331 -3497841 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1504 1002 93 48 7 chr9 120578333 120578488 -3497684 - B2_Mm2 SINE B2 -15 180 3 1 1504 352 233 81 72 chr9 120578500 120578611 -3497561 - HAL1-3A_ME LINE L1 -772 2086 1975 1 1504 450 146 0 0 chr9 120578611 120578693 -3497479 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1504 718 249 125 76 chr9 120578806 120579149 -3497023 + MTE2a LTR MaLR 6 365 -14 1 1504 219 36 0 0 chr9 120579475 120579503 -3496669 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1504 1362 82 5 11 chr9 120579546 120579732 -3496440 - B2_Mm1a SINE B2 -7 186 2 1 1504 373 286 19 9 chr9 120580142 120580248 -3495924 + PB1D10 SINE Alu 10 116 -1 1 1504 704 86 9 0 chr9 120580326 120580431 -3495741 + (GGAA)n Simple_repeat Simple_repeat 1 106 0 1 1504 515 239 55 0 chr9 120581109 120581218 -3494954 - PB1D10 SINE Alu 0 117 3 1 1504 221 176 0 0 chr9 120581219 120581253 -3494919 - ID_B1 SINE B4 -108 116 83 1 1504 687 273 80 34 chr9 120582131 120582393 -3493779 + B4A SINE B4 3 276 -16 1 1504 544 172 366 0 chr9 120582396 120582530 -3493642 - B3 SINE B2 -33 183 1 1 1504 337 247 154 22 chr9 120582581 120582672 -3493500 - B3A SINE B2 -95 103 1 1 1504 326 322 76 67 chr9 120582672 120582883 -3493289 - B4A SINE B4 -71 221 9 1 1504 181 302 0 70 chr9 120583432 120583489 -3492683 + MIR SINE MIR 21 73 -189 1 1504 850 265 76 55 chr9 120584064 120584407 -3491765 + ORR1D1 LTR MaLR 25 374 0 1 1504 241 329 0 0 chr9 120584479 120584564 -3491608 + G-rich Low_complexity Low_complexity 1 85 0 1 1504 199 256 23 0 chr9 120585222 120585265 -3490907 - L3 LINE CR1 -462 4027 3984 1 1504 338 143 169 14 chr9 120585294 120585365 -3490807 - MTEa LTR MaLR -2 377 296 1 1505 200 215 179 30 chr9 120586366 120586433 -3489739 - MIRb SINE MIR 0 268 192 1 1505 378 0 0 0 chr9 120586566 120586608 -3489564 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1505 260 214 18 18 chr9 120586718 120586775 -3489397 + MIRm SINE MIR 215 271 -5 1 1505 887 234 20 20 chr9 120587115 120587316 -3488856 - B3 SINE B2 -14 202 2 1 1505 29 0 0 0 chr9 120587797 120587826 -3488346 + AT_rich Low_complexity Low_complexity 1 29 0 1 1505 261 0 0 0 chr9 120587881 120587910 -3488262 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 1505 778 204 0 0 chr9 120587919 120588061 -3488111 - B1_Mur2 SINE Alu -7 142 1 1 1505 281 207 0 17 chr9 120588096 120588155 -3488017 + B1F1 SINE Alu 91 148 -1 1 1505 380 278 60 77 chr9 120588156 120588194 -3487978 + L1MB7 LINE L1 5167 5202 -944 1 1505 357 221 206 32 chr9 120588194 120588320 -3487852 + B1_Mur2 SINE Alu 1 148 -1 1 1505 380 278 60 77 chr9 120588320 120588449 -3487723 + L1MB7 LINE L1 5203 5331 -815 1 1505 648 221 27 27 chr9 120588450 120588599 -3487573 + B1F1 SINE Alu 1 149 0 1 1505 1736 129 65 79 chr9 120588853 120589222 -3486950 - RLTR9A LTR ERVK -3 365 2 2 1505 299 200 55 11 chr9 120589242 120589333 -3486839 + L1MB7 LINE L1 5589 5683 -495 1 1505 614 283 85 38 chr9 120589395 120589711 -3486461 - RLTR15 LTR ERVK -28 331 1 2 1505 301 294 10 52 chr9 120589834 120589931 -3486241 - B3A SINE B2 -98 100 8 2 1505 1215 68 0 0 chr9 120589984 120590131 -3486041 + B1_Mus2 SINE Alu 1 147 0 2 1505 417 204 74 0 chr9 120590152 120590260 -3485912 + L1MB7 LINE L1 6059 6174 -10 1 1505 410 314 150 47 chr9 120590857 120591198 -3484974 - L1M4 LINE L1 -2518 3628 3253 2 1505 529 252 71 7 chr9 120591280 120591420 -3484752 - B1_Mur2 SINE Alu 0 149 1 2 1505 316 295 0 60 chr9 120591355 120591438 -3484734 - B4A SINE B4 -142 150 73 2 1505 7910 63 11 1 chr9 120591536 120592605 -3483567 + L1_Mus4 LINE L1 5531 6626 -10 2 1505 1177 76 0 0 chr9 120592681 120592825 -3483347 - B1_Mus2 SINE Alu -2 145 2 2 1505 398 99 32 12 chr9 120592830 120592935 -3483237 - B2_Mm2 SINE B2 -2 193 47 2 1505 1384 62 11 6 chr9 120593012 120593190 -3482982 - B2_Mm1t SINE B2 -14 179 1 2 1505 311 221 139 82 chr9 120593641 120593799 -3482373 + HAL1-3A_ME LINE L1 2284 2450 -408 2 1505 363 323 158 6 chr9 120593810 120593975 -3482197 + B4A SINE B4 83 272 -20 2 1505 987 120 0 0 chr9 120593986 120594354 -3481818 + (CA)n Simple_repeat Simple_repeat 1 368 0 2 1505 419 235 128 0 chr9 120594714 120594816 -3481356 - RSINE1 SINE B4 -21 144 30 2 1505 303 319 156 33 chr9 120594878 120595121 -3481051 - L1M5 LINE L1 -2472 3674 3402 2 1505 243 0 0 0 chr9 120595423 120595450 -3480722 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1505 240 341 59 0 chr9 120596028 120596113 -3480059 - MLT1A LTR MaLR -35 339 250 2 1505 552 179 0 0 chr9 120596124 120596236 -3479936 + (CA)n Simple_repeat Simple_repeat 1 112 0 2 1505 1379 62 34 6 chr9 120596432 120596611 -3479561 - B2_Mm1t SINE B2 -8 185 2 2 1505 1214 62 0 0 chr9 120596680 120596826 -3479346 + B1_Mus2 SINE Alu 2 147 0 2 1505 189 107 0 0 chr9 120596884 120596912 -3479260 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 2 1505 792 0 0 0 chr9 120596930 120597018 -3479154 + (GGGAA)n Simple_repeat Simple_repeat 2 89 0 2 1505 282 73 0 0 chr9 120598340 120598381 -3477791 + (GGGAGA)n Simple_repeat Simple_repeat 3 43 0 2 1505 482 0 17 0 chr9 120601100 120601158 -3475014 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1505 513 253 115 13 chr9 120601174 120601330 -3474842 - MTE2b LTR MaLR -188 191 20 2 1505 403 280 65 20 chr9 120602150 120602303 -3473869 - MER5A DNA MER1_type -20 169 10 2 1505 339 370 50 45 chr9 120603991 120604212 -3471960 - MLT1J LTR MaLR -53 459 238 2 1505 652 222 19 32 chr9 120604412 120604570 -3471602 + MTD LTR MaLR 264 419 0 2 1505 480 233 38 19 chr9 120604571 120604676 -3471496 + MTE2a LTR MaLR 215 321 -58 2 1505 22 0 0 0 chr9 120604676 120604698 -3471474 + AT_rich Low_complexity Low_complexity 1 22 0 2 1505 341 301 65 14 chr9 120604763 120604901 -3471271 - MLT1J LTR MaLR -339 173 29 2 1505 1116 172 58 10 chr9 120604948 120605154 -3471018 - B3 SINE B2 0 216 1 2 1505 687 302 65 0 chr9 120605175 120605390 -3470782 - MTE2b LTR MaLR -5 374 146 2 1505 226 336 62 0 chr9 120605397 120605411 -3470761 - MT2A LTR ERVL -413 120 1 2 1505 364 313 10 0 chr9 120605411 120605510 -3470662 - MTE2b LTR MaLR -279 100 1 2 1505 3374 45 2 2 chr9 120605555 120605955 -3470217 - MTB LTR MaLR 0 400 1 2 1505 234 321 46 73 chr9 120606481 120606632 -3469540 - LTR16A1 LTR ERVL -65 391 245 2 1505 578 263 95 30 chr9 120607585 120607747 -3468425 + MTEa LTR MaLR 2 178 -201 2 1505 627 14 0 0 chr9 120607747 120607819 -3468353 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1505 578 263 95 30 chr9 120607819 120607856 -3468316 + MTEa LTR MaLR 179 213 -166 2 1505 1103 73 7 0 chr9 120608286 120608423 -3467749 - B1_Mus2 SINE Alu -9 138 1 2 1505 998 109 14 7 chr9 120608531 120608678 -3467494 - B1_Mus1 SINE Alu 0 148 1 2 1505 1656 32 0 0 chr9 120608687 120608874 -3467298 - B2_Mm1a SINE B2 -5 188 2 2 1505 2373 153 113 33 chr9 120608874 120609361 -3466811 - RMER19B LTR ERVK -16 886 361 2 1505 1239 163 0 165 chr9 120609374 120609646 -3466526 - RMER19B LTR ERVK -675 227 1 2 1505 551 224 0 0 chr9 120609898 120609996 -3466176 - RSINE1 SINE B4 -65 100 3 2 1505 387 60 0 0 chr9 120610016 120610066 -3466106 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2 1505 1270 56 6 0 chr9 120610066 120610226 -3465946 - B2_Mm2 SINE B2 -34 161 1 2 1505 23 0 0 0 chr9 120610248 120610271 -3465901 + AT_rich Low_complexity Low_complexity 1 23 0 2 1505 978 205 105 0 chr9 120610271 120610461 -3465711 - B3 SINE B2 -6 210 1 2 1505 648 219 170 68 chr9 120611419 120611446 -3464726 - B4A SINE B4 0 292 266 2 1505 423 0 0 0 chr9 120611446 120611493 -3464679 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1505 648 219 170 68 chr9 120611493 120611730 -3464442 - B4A SINE B4 -27 265 1 2 1505 458 330 0 0 chr9 120611758 120611873 -3464299 - PB1D10 SINE Alu -1 116 2 2 1505 392 251 33 35 chr9 120611893 120612033 -3464139 + MIRb SINE MIR 95 232 -30 2 1505 23 0 0 0 chr9 120613147 120613170 -3463002 + AT_rich Low_complexity Low_complexity 1 23 0 2 1505 276 267 0 0 chr9 120613242 120613373 -3462799 + (CA)n Simple_repeat Simple_repeat 1 131 0 2 1505 1095 271 42 29 chr9 120613377 120613761 -3462411 - Lx9 LINE L1 -128 7516 7128 2 1505 599 127 18 35 chr9 120613762 120613876 -3462296 - RLTR15 LTR ERVK -220 139 28 2 1505 1774 184 32 45 chr9 120613995 120614264 -3461908 + MTEa LTR MaLR 2 273 -106 2 1505 2539 143 36 17 chr9 120614264 120614675 -3461497 - MTC LTR MaLR -2 419 1 2 1505 1774 184 32 45 chr9 120614675 120614780 -3461392 + MTEa LTR MaLR 274 371 -8 2 1505 263 338 143 0 chr9 120615297 120615451 -3460721 - MLT1H LTR MaLR -2 547 372 2 1505 297 299 113 0 chr9 120615607 120615704 -3460468 - MER5A1 DNA MER1_type -15 151 44 2 1505 198 0 0 0 chr9 120616397 120616419 -3459753 + (TATATG)n Simple_repeat Simple_repeat 3 24 0 2 1505 191 276 10 0 chr9 120616464 120616562 -3459610 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1505 320 268 0 7 chr9 120616580 120616723 -3459449 + (TG)n Simple_repeat Simple_repeat 1 142 0 2 1505 866 238 98 36 chr9 120616723 120616998 -3459174 - B4 SINE B4 0 292 1 2 1505 718 282 32 23 chr9 120618561 120618779 -3457393 + B4A SINE B4 3 222 -70 2 1505 3469 14 2 0 chr9 120618780 120619193 -3456979 + L1Md_F2 LINE L1 5173 5586 -297 2 1505 8135 52 2 1 chr9 120619194 120620188 -3455984 + L1Md_F2 LINE L1 5588 6582 0 2 1505 424 214 0 0 chr9 120620206 120620276 -3455896 + B3 SINE B2 2 71 -145 2 1505 3161 124 97 0 chr9 120620280 120620296 -3455876 + RMER4B LTR ERVK 17 44 -541 2 1505 387 41 0 0 chr9 120620296 120620345 -3455827 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1505 3161 124 97 0 chr9 120620345 120620566 -3455606 + RMER4B LTR ERVK 45 265 -320 2 1505 3832 68 30 22 chr9 120620566 120621074 -3455098 - RLTR1B LTR ERV1 0 512 1 2 1505 3161 124 97 0 chr9 120621074 120621352 -3454820 + RMER4B LTR ERVK 266 581 -4 2 1505 308 262 0 15 chr9 120621366 120621432 -3454740 + B4A SINE B4 216 280 -12 2 1505 490 29 0 29 chr9 120621442 120621512 -3454660 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1505 1301 71 65 16 chr9 120621935 120622121 -3454051 + B2_Mm2 SINE B2 1 195 0 2 1505 556 173 132 97 chr9 120622186 120622360 -3453812 + B3A SINE B2 2 184 -32 2 1505 417 39 0 0 chr9 120622360 120622411 -3453761 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1505 511 211 119 119 chr9 120622411 120622446 -3453726 + B3 SINE B2 185 211 -5 2 1505 1215 189 188 15 chr9 120622791 120623127 -3453045 + MTD LTR MaLR 1 417 -4 2 1505 602 197 11 27 chr9 120623409 120623592 -3452580 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 1505 350 256 0 0 chr9 120623592 120623670 -3452502 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1505 467 265 4 12 chr9 120623689 120623934 -3452238 + (TG)n Simple_repeat Simple_repeat 1 242 0 2 1505 282 292 46 119 chr9 120623935 120624044 -3452128 - B4A SINE B4 -1 291 191 2 1505 521 256 7 52 chr9 120624058 120624194 -3451978 - B4A SINE B4 -162 130 1 2 1505 1036 220 10 10 chr9 120624568 120624761 -3451411 - B3 SINE B2 -21 195 3 2 1505 609 292 69 36 chr9 120625377 120625651 -3450521 + B4A SINE B4 2 284 -8 2 1505 341 93 19 0 chr9 120625675 120625729 -3450443 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1505 2343 107 92 0 chr9 120625889 120626225 -3449947 - ORR1B2 LTR MaLR 0 367 1 2 1505 1164 258 77 24 chr9 120626279 120626439 -3449733 - MTEb LTR MaLR 0 379 200 2 1505 2059 176 158 4 chr9 120626439 120626901 -3449271 + MT2A LTR ERVL 1 533 0 2 1505 1164 258 77 24 chr9 120626901 120627078 -3449094 - MTEb LTR MaLR -180 199 24 2 1505 618 252 121 13 chr9 120627330 120627487 -3448685 - B3A SINE B2 -39 177 4 2 1505 311 65 22 0 chr9 120627535 120627581 -3448591 + (GGGAGA)n Simple_repeat Simple_repeat 2 48 0 2 1505 561 64 0 0 chr9 120627889 120627967 -3448205 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 2 1505 618 140 26 61 chr9 120628804 120628918 -3447254 + B1_Mur1 SINE Alu 40 149 0 2 1505 243 170 29 29 chr9 120628976 120629079 -3447093 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 1505 286 200 110 24 chr9 120629398 120629480 -3446692 + MTE2a LTR MaLR 18 106 -313 2 1505 441 0 0 0 chr9 120629492 120629541 -3446631 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 2 1505 764 100 0 0 chr9 120629542 120629642 -3446530 - B2_Mm2 SINE B2 -41 154 55 2 1505 369 0 0 0 chr9 120629680 120629721 -3446451 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2 1505 1229 78 0 0 chr9 120629722 120629875 -3446297 - B2_Mm2 SINE B2 -41 154 2 2 1505 845 253 86 25 chr9 120629875 120629993 -3446179 + MTE2a LTR MaLR 78 205 -174 2 1505 252 122 0 0 chr9 120629993 120630034 -3446138 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 2 1505 845 253 86 25 chr9 120630034 120630158 -3446014 + MTE2a LTR MaLR 206 334 -45 2 1505 513 71 118 0 chr9 120630177 120630262 -3445910 - B2_Mm2 SINE B2 0 195 101 2 1505 1018 271 115 20 chr9 120630918 120631275 -3444897 + MLT2D LTR ERVL 3 393 -21 2 1505 628 211 0 22 chr9 120631313 120631497 -3444675 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1505 253 167 0 127 chr9 120631526 120631581 -3444591 + MLT2D LTR ERVL 513 560 0 2 1505 497 232 25 143 chr9 120631596 120631757 -3444415 - MTEa LTR MaLR -8 371 230 2 1505 378 0 0 0 chr9 120632185 120632227 -3443945 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1505 991 200 52 59 chr9 120632589 120632876 -3443296 + ORR1C2 LTR MaLR 1 285 -99 2 1505 228 220 0 0 chr9 120632991 120633050 -3443122 + (CAG)n Simple_repeat Simple_repeat 3 61 0 2 1505 458 159 0 49 chr9 120633050 120633145 -3443027 + ORR1C2 LTR MaLR 287 376 -2 2 1505 1403 191 97 105 chr9 120633246 120633627 -3442545 - MTD LTR MaLR -40 379 2 3 1505 612 275 122 29 chr9 120633644 120633882 -3442290 - MTEa LTR MaLR -113 266 1 2 1505 189 0 0 0 chr9 120634119 120634140 -3442032 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1505 458 88 25 0 chr9 120634176 120634256 -3441916 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 3 1505 579 275 0 64 chr9 120634521 120634692 -3441480 + RSINE1 SINE B4 5 164 -1 3 1505 1216 34 0 13 chr9 120634737 120634886 -3441286 + B1_Mus2 SINE Alu 1 147 0 3 1505 385 305 164 19 chr9 120634993 120635200 -3440972 - L1M5 LINE L1 -753 5393 5157 3 1505 307 253 77 35 chr9 120635216 120635384 -3440788 - B3 SINE B2 -5 193 21 3 1505 1114 97 73 0 chr9 120635478 120635643 -3440529 + B2_Mm2 SINE B2 1 177 -18 3 1505 29 28 0 0 chr9 120635673 120635709 -3440463 + AT_rich Low_complexity Low_complexity 1 36 0 3 1505 834 188 0 57 chr9 120635805 120635963 -3440209 - B1_Mur2 SINE Alu 0 149 1 3 1505 228 308 13 13 chr9 120635972 120636051 -3440121 - 4.5SRNA scRNA scRNA -14 80 2 3 1505 432 0 0 0 chr9 120636233 120636281 -3439891 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1505 970 194 82 11 chr9 120636322 120636504 -3439668 + B3A SINE B2 2 196 -2 3 1505 438 320 26 79 chr9 120636578 120636630 -3439542 + LTR16C LTR ERVL 309 354 -135 3 1505 342 0 0 0 chr9 120636630 120636668 -3439504 + (TAG)n Simple_repeat Simple_repeat 3 40 0 3 1505 438 320 26 79 chr9 120636668 120636805 -3439367 + LTR16C LTR ERVL 355 488 -1 3 1505 536 282 169 24 chr9 120636909 120637163 -3439009 - B4 SINE B4 0 292 2 3 1505 2640 194 68 87 chr9 120637193 120637303 -3438869 - RMER1C Other Other 0 1342 1208 3 1505 1257 71 0 0 chr9 120637303 120637783 -3438389 + (GGA)n Simple_repeat Simple_repeat 1 480 0 3 1505 2640 194 68 87 chr9 120637783 120637947 -3438225 - RMER1C Other Other -135 1207 1058 3 1505 980 122 6 58 chr9 120637947 120638103 -3438069 - B1_Mur3 SINE Alu 0 149 2 3 1505 2640 194 68 87 chr9 120638103 120638425 -3437747 - RMER1C Other Other -285 1057 750 3 1505 2643 169 208 27 chr9 120638425 120639046 -3437126 - RMER19A LTR ERVK -4 733 1 3 1505 2640 194 68 87 chr9 120639046 120639164 -3437008 - RMER1C Other Other -593 749 637 3 1505 351 0 0 0 chr9 120639735 120639774 -3436398 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1505 437 0 19 0 chr9 120640065 120640118 -3436054 + (CAAAC)n Simple_repeat Simple_repeat 3 56 0 3 1505 1165 70 0 0 chr9 120640346 120640489 -3435683 + B1_Mm SINE Alu 5 147 0 3 1505 283 60 40 0 chr9 120640893 120640943 -3435229 + (TGGGGG)n Simple_repeat Simple_repeat 3 54 0 3 1505 277 315 77 0 chr9 120643208 120643338 -3432834 - L2 LINE L2 -1004 2415 2276 3 1505 953 221 14 48 chr9 120645710 120645919 -3430253 - B3 SINE B2 -14 202 1 3 1505 221 54 0 75 chr9 120646088 120646128 -3430044 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 3 1505 25 31 0 0 chr9 120646274 120646306 -3429866 + AT_rich Low_complexity Low_complexity 1 32 0 3 1505 637 228 86 25 chr9 120646314 120646512 -3429660 + ORR1E LTR MaLR 150 359 0 3 1505 930 121 7 0 chr9 120646766 120646907 -3429265 + B1_Mus1 SINE Alu 6 147 -1 3 1505 288 77 0 0 chr9 120646963 120647002 -3429170 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1505 900 254 30 9 chr9 120648016 120648231 -3427941 - ID_B1 SINE B4 -37 255 38 3 1505 809 305 68 32 chr9 120649536 120649817 -3426355 + B4A SINE B4 2 292 0 3 1505 255 224 35 0 chr9 120649817 120649875 -3426297 + (CATA)n Simple_repeat Simple_repeat 1 60 0 3 1505 530 291 27 10 chr9 120650357 120650538 -3425634 - B3A SINE B2 -10 185 2 3 1505 411 21 0 0 chr9 120650580 120650628 -3425544 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 3 1505 406 86 35 0 chr9 120650677 120650735 -3425437 - B3 SINE B2 -108 108 49 3 1505 933 223 29 19 chr9 120650785 120650995 -3425177 + B3 SINE B2 5 216 0 3 1505 1081 264 138 11 chr9 120651139 120651495 -3424677 - MTD LTR MaLR -14 405 5 3 1505 657 184 18 0 chr9 120651787 120652192 -3423980 + (TG)n Simple_repeat Simple_repeat 1 412 0 3 1505 222 219 0 0 chr9 120652206 120652270 -3423902 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1505 1051 249 54 11 chr9 120652285 120652561 -3423611 - B4 SINE B4 -4 288 1 3 1505 240 226 0 19 chr9 120653131 120653185 -3422987 - MLT1A1 LTR MaLR -2 406 354 3 1505 269 51 0 25 chr9 120653642 120653682 -3422490 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 3 1505 1037 79 64 0 chr9 120653682 120653822 -3422350 - B1_Mur4 SINE Alu 0 150 2 3 1505 308 284 14 0 chr9 120653826 120653900 -3422272 - MTE-int LTR MaLR -1502 78 4 3 1505 311 265 71 29 chr9 120653946 120654086 -3422086 + L1MA4 LINE L1 5714 5859 -441 3 1505 799 138 78 21 chr9 120654098 120654239 -3421933 + B1_Mur4 SINE Alu 1 149 -1 3 1505 229 26 0 50 chr9 120654239 120654279 -3421893 + (CACCC)n Simple_repeat Simple_repeat 1 38 0 3 1505 329 290 105 43 chr9 120654491 120654700 -3421472 + MLT1A1 LTR MaLR 157 378 -30 3 1505 327 261 98 93 chr9 120654890 120655084 -3421088 + MLT1H LTR MaLR 246 440 -109 3 1505 326 228 25 0 chr9 120655275 120655354 -3420818 - Tigger5 DNA MER2_type -1 2405 2325 3 1505 828 272 53 39 chr9 120655353 120655636 -3420536 + B4A SINE B4 6 292 0 3 1505 575 228 0 6 chr9 120655644 120655825 -3420347 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1505 279 354 62 0 chr9 120655888 120655984 -3420188 - Tigger5 DNA MER2_type -2167 239 138 3 1505 216 86 0 0 chr9 120656808 120656843 -3419329 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 1505 716 184 12 104 chr9 120656884 120657048 -3419124 + B3 SINE B2 58 206 -10 3 1505 189 107 0 0 chr9 120657059 120657087 -3419085 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1505 792 267 47 24 chr9 120657614 120657825 -3418347 + ID_B1 SINE B4 9 224 0 3 1505 2322 86 16 3 chr9 120658719 120659034 -3417138 - ORR1A2 LTR MaLR -8 319 1 3 1505 351 325 30 0 chr9 120659034 120659243 -3416929 + (GGATG)n Simple_repeat Simple_repeat 1 215 0 3 1505 330 115 0 0 chr9 120659543 120659595 -3416577 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1505 496 228 43 54 chr9 120660376 120660641 -3415531 - ORR1E LTR MaLR -8 371 1 3 1505 333 0 0 0 chr9 120661229 120661266 -3414906 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1505 627 51 0 0 chr9 120661266 120661344 -3414828 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1505 769 271 29 195 chr9 120661441 120661682 -3414490 + B4 SINE B4 3 227 -65 3 1505 1214 68 0 0 chr9 120661682 120661829 -3414343 + B1_Mus2 SINE Alu 1 147 0 3 1505 769 271 29 195 chr9 120661829 120661935 -3414237 + B4 SINE B4 228 292 0 3 1505 530 198 23 23 chr9 120661937 120662108 -3414064 + (CATA)n Simple_repeat Simple_repeat 2 172 0 3 1505 513 205 0 0 chr9 120662161 120662283 -3413889 + (CA)n Simple_repeat Simple_repeat 1 122 0 3 1505 197 65 32 0 chr9 120662288 120662319 -3413853 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 3 1505 274 257 13 13 chr9 120663307 120663382 -3412790 - MLT1E1 LTR MaLR 0 654 580 3 1505 297 234 52 0 chr9 120663382 120663459 -3412713 - MTC LTR MaLR 0 419 339 3 1505 724 74 205 0 chr9 120663455 120663577 -3412595 + ORR1B2 LTR MaLR 7 153 -214 3 1505 750 11 0 0 chr9 120663577 120663664 -3412508 + (TTTC)n Simple_repeat Simple_repeat 4 90 0 3 1505 207 0 0 0 chr9 120663738 120663761 -3412411 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1505 204 40 0 0 chr9 120663840 120663865 -3412307 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 3 1505 224 132 0 54 chr9 120664687 120664743 -3411429 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1505 381 200 67 42 chr9 120665101 120665232 -3410940 + ORR1B2 LTR MaLR 146 269 -109 3 1505 1472 179 19 8 chr9 120665226 120665490 -3410682 - MTC LTR MaLR -115 306 40 3 1505 1311 233 53 61 chr9 120665513 120665892 -3410280 - MTEa LTR MaLR 0 379 4 3 1505 494 172 141 0 chr9 120665901 120666000 -3410172 + B1_Mur1 SINE Alu 25 137 -12 3 1505 3571 38 30 7 chr9 120666279 120666705 -3409467 - RLTR10C LTR ERVK 0 436 1 3 1505 615 182 111 83 chr9 120666940 120667084 -3409088 + B1_Mur3 SINE Alu 2 149 0 3 1505 686 182 0 7 chr9 120667085 120667240 -3408932 + GA-rich Low_complexity Low_complexity 1 154 0 3 1505 189 0 0 0 chr9 120667706 120667727 -3408445 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1505 263 182 0 68 chr9 120667739 120667798 -3408374 - B4A SINE B4 -18 274 220 3 1505 766 269 141 26 chr9 120667803 120668143 -3408029 - Lx8 LINE L1 0 7473 7095 3 1505 531 271 139 69 chr9 120668143 120668345 -3407827 - B4A SINE B4 -76 216 1 3 1505 355 306 62 55 chr9 120668363 120668491 -3407681 + MIRb SINE MIR 16 144 -124 3 1505 762 247 117 20 chr9 120669420 120669702 -3406470 + MTD LTR MaLR 6 373 -46 3 1505 315 0 0 0 chr9 120669702 120669737 -3406435 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1505 1262 14 0 0 chr9 120669737 120669876 -3406296 - B1_Mm SINE Alu -8 139 1 3 1505 251 188 156 170 chr9 120669876 120669936 -3406236 + MTD LTR MaLR 329 377 -2 3 1505 341 181 65 28 chr9 120670758 120670866 -3405306 + Lx3C LINE L1 6864 6975 -1 3 1505 606 82 0 0 chr9 120670902 120670987 -3405185 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1505 960 132 7 14 chr9 120671096 120671234 -3404938 + B1_Mur2 SINE Alu 1 137 -12 3 1505 252 0 0 0 chr9 120671234 120671262 -3404910 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 3 1505 582 184 45 9 chr9 120671262 120671372 -3404800 + B3 SINE B2 1 114 -102 3 1505 216 164 0 69 chr9 120671382 120671454 -3404718 + A-rich Low_complexity Low_complexity 3 69 0 3 1505 396 219 0 0 chr9 120671858 120671931 -3404241 + B3A SINE B2 15 87 -111 3 1505 24 0 0 0 chr9 120672671 120672695 -3403477 + AT_rich Low_complexity Low_complexity 1 24 0 3 1505 435 332 107 23 chr9 120673203 120673419 -3402753 + LTR33A_ LTR ERVL 34 267 -264 3 1505 1358 177 132 43 chr9 120674610 120674929 -3401243 + ORR1C2 LTR MaLR 2 349 -35 3 1505 367 215 172 0 chr9 120674929 120675022 -3401150 - RLTR17 LTR ERVK 0 692 584 3 1505 300 91 0 0 chr9 120675048 120675092 -3401080 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1505 644 250 163 13 chr9 120675104 120675343 -3400829 - B4 SINE B4 -14 278 4 3 1505 1340 225 102 28 chr9 120675925 120676286 -3399886 - MTD LTR MaLR -14 405 18 4 1505 1550 200 22 56 chr9 120676385 120676766 -3399406 + RLTR20C LTR ERVK 1 450 -91 4 1505 252 0 0 0 chr9 120676766 120676794 -3399378 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1505 566 212 136 7 chr9 120676794 120676877 -3399295 + RLTR20C LTR ERVK 451 540 -1 4 1505 940 209 40 18 chr9 120676887 120677111 -3399061 - MTEa LTR MaLR -1 378 150 4 1505 571 47 324 36 chr9 120677151 120677262 -3398910 - B2_Mm2 SINE B2 -6 189 47 4 1505 1381 62 23 0 chr9 120677274 120677451 -3398721 - B2_Mm2 SINE B2 -13 182 2 4 1505 24 0 0 0 chr9 120677652 120677676 -3398496 + AT_rich Low_complexity Low_complexity 1 24 0 4 1505 600 180 17 75 chr9 120677700 120677820 -3398352 + B1F1 SINE Alu 5 117 0 4 1505 393 302 21 0 chr9 120678003 120678099 -3398073 + B1F2 SINE Alu 1 98 -51 4 1505 385 342 75 45 chr9 120678099 120678202 -3397970 + B4A SINE B4 86 290 -2 4 1505 218 231 0 15 chr9 120678777 120678843 -3397329 + GA-rich Low_complexity Low_complexity 5 69 0 4 1505 297 0 0 0 chr9 120680006 120680039 -3396133 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1505 360 0 0 0 chr9 120680039 120680078 -3396094 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1505 198 0 0 0 chr9 120680078 120680100 -3396072 + (TGG)n Simple_repeat Simple_repeat 3 24 0 4 1505 1329 239 60 65 chr9 120680384 120680751 -3395421 - ORR1D2 LTR MaLR -5 365 1 4 1505 217 288 32 188 chr9 120680816 120680970 -3395202 - ID_B1 SINE B4 -10 214 85 4 1505 323 268 101 36 chr9 120681186 120681422 -3394750 - L1MD2 LINE L1 -385 5974 5722 4 1505 605 270 77 31 chr9 120681459 120681719 -3394453 - L1MD2 LINE L1 -693 5666 5395 4 1505 369 0 0 0 chr9 120681719 120681760 -3394412 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1505 755 250 31 26 chr9 120681976 120682169 -3394003 + B3A SINE B2 1 194 -4 4 1505 28 29 0 0 chr9 120682172 120682207 -3393965 + AT_rich Low_complexity Low_complexity 1 35 0 4 1505 225 0 0 0 chr9 120682516 120682541 -3393631 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1505 1167 99 0 0 chr9 120682541 120682702 -3393470 - B2_Mm2 SINE B2 -34 161 1 4 1505 249 308 81 76 chr9 120682739 120682936 -3393236 - LTR85b LTR Gypsy? -160 624 427 4 1505 450 36 0 0 chr9 120682940 120682996 -3393176 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1505 562 249 149 74 chr9 120683044 120683313 -3392859 - B4A SINE B4 0 292 4 4 1505 324 0 0 0 chr9 120683509 120683545 -3392627 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1505 680 211 135 0 chr9 120683547 120683680 -3392492 - B3 SINE B2 -65 151 1 4 1505 22 0 0 0 chr9 120683912 120683934 -3392238 + AT_rich Low_complexity Low_complexity 1 22 0 4 1505 674 221 6 48 chr9 120685156 120685322 -3390850 + B4A SINE B4 4 162 -130 4 1505 207 0 0 0 chr9 120685411 120685434 -3390738 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 4 1505 198 103 0 0 chr9 120686152 120686181 -3389991 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1505 960 111 0 0 chr9 120686477 120686657 -3389515 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1505 250 333 33 41 chr9 120687281 120687403 -3388769 + B4A SINE B4 1 121 -171 4 1505 811 245 83 0 chr9 120688206 120688398 -3387774 + MER58A DNA MER1_type 17 224 0 4 1505 804 294 110 4 chr9 120688457 120688730 -3387442 + RCHARR1 DNA MER1_type 94 395 -579 4 1505 649 24 0 0 chr9 120688736 120688847 -3387325 - L1Md_T LINE L1 0 6582 6499 4 1505 366 119 0 0 chr9 120688847 120688878 -3387294 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1505 1238 54 0 0 chr9 120688878 120689025 -3387147 - B1_Mus2 SINE Alu 0 147 1 4 1505 892 246 13 18 chr9 120689085 120689309 -3386863 + RCHARR1 DNA MER1_type 751 973 -1 4 1505 203 143 29 67 chr9 120689337 120689442 -3386730 + C-rich Low_complexity Low_complexity 2 102 0 4 1505 256 295 28 34 chr9 120689455 120689634 -3386538 + C-rich Low_complexity Low_complexity 3 180 0 4 1505 1330 222 127 33 chr9 120689654 120690110 -3386062 + Lx8 LINE L1 6966 7464 -9 4 1505 226 241 17 39 chr9 120690152 120690333 -3385839 + (CATA)n Simple_repeat Simple_repeat 2 178 0 4 1505 321 251 14 48 chr9 120690288 120690589 -3385583 + (CATATA)n Simple_repeat Simple_repeat 1 290 0 4 1505 2976 76 2 10 chr9 120690722 120691122 -3385050 - MTB LTR MaLR -3 397 1 4 1505 561 219 160 0 chr9 120691248 120691367 -3384805 - B1F SINE Alu -11 138 1 4 1505 216 0 0 0 chr9 120691691 120691715 -3384457 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 1505 324 0 0 0 chr9 120691842 120691878 -3384294 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1505 2914 235 157 24 chr9 120692103 120692949 -3383223 + RCHARR1 DNA MER1_type 4 962 -12 4 1505 400 186 120 30 chr9 120693384 120693484 -3382688 - MLT1A0 LTR MaLR -1 364 256 4 1505 809 238 159 109 chr9 120693483 120693804 -3382368 + MTE2a LTR MaLR 29 365 -14 4 1505 238 315 28 112 chr9 120693852 120693995 -3382177 - MLT1A0 LTR MaLR -208 200 70 4 1505 3190 127 29 8 chr9 120694668 120695178 -3380994 + RLTR28 LTR ERVL 1 521 -3 4 1505 1061 239 69 122 chr9 120695740 120696116 -3380056 + MTE2a LTR MaLR 1 356 -23 4 1505 687 269 67 111 chr9 120696336 120696696 -3379476 - MT2A LTR ERVL -1 532 189 4 1505 2076 196 36 20 chr9 120696710 120697101 -3379071 + MTC LTR MaLR 17 413 -8 4 1505 1534 202 74 69 chr9 120697110 120697515 -3378657 - MTB_Mm LTR MaLR 0 407 1 4 1505 6440 150 60 28 chr9 120697515 120698733 -3377439 - MTB_Mm-int LTR MaLR 0 1258 2 4 1505 2490 143 18 2 chr9 120698733 120699132 -3377040 - MTB_Mm LTR MaLR 0 407 2 4 1505 400 277 40 0 chr9 120699193 120699294 -3376878 - MTEa LTR MaLR -265 114 10 4 1505 830 220 166 11 chr9 120699723 120700052 -3376120 - MTD LTR MaLR 0 419 15 4 1505 220 209 0 0 chr9 120700196 120700239 -3375933 + (TATG)n Simple_repeat Simple_repeat 4 46 0 4 1505 333 297 19 31 chr9 120700408 120700568 -3375604 - L1M5 LINE L1 -1092 5054 4897 4 1505 1718 96 0 16 chr9 120700659 120700903 -3375269 - 7SK RNA RNA -91 240 1 4 1505 910 269 147 11 chr9 120700929 120701288 -3374884 + MTD LTR MaLR 1 404 -15 4 1505 550 301 129 73 chr9 120701328 120701632 -3374540 - L1M5 LINE L1 -1445 4701 4373 4 1505 831 185 14 7 chr9 120701632 120701779 -3374393 - B1_Mur4 SINE Alu -2 148 1 4 1505 550 301 129 73 chr9 120701779 120701815 -3374357 - L1M5 LINE L1 -1774 4372 4342 4 1505 821 188 44 84 chr9 120701907 120701946 -3374226 - B3A SINE B2 -2 196 166 4 1505 1257 161 8 63 chr9 120701946 120702184 -3373988 + URR1B DNA MER1_type 1 225 0 4 1505 821 188 44 84 chr9 120702184 120702347 -3373825 - B3A SINE B2 -33 165 2 4 1505 265 282 328 0 chr9 120702366 120702497 -3373675 - Tigger5 DNA MER2_type -82 2324 2151 4 1505 292 304 22 0 chr9 120702749 120702887 -3373285 + CT-rich Low_complexity Low_complexity 2 142 0 4 1505 1228 94 27 16 chr9 120703823 120704007 -3372165 + B2_Mm2 SINE B2 2 187 -8 4 1505 749 192 0 0 chr9 120704074 120704199 -3371973 + RSINE1 SINE B4 3 127 -38 4 1505 2445 80 113 11 chr9 120704207 120704561 -3371611 + RLTR10 LTR ERVK 1 390 0 4 1505 212 128 51 0 chr9 120705128 120705167 -3371005 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 4 1505 839 295 5 0 chr9 120705174 120705374 -3370798 - ID_B1 SINE B4 0 224 24 4 1505 1298 107 6 0 chr9 120706271 120706449 -3369723 - B2_Mm1a SINE B2 -14 179 1 4 1505 706 297 32 32 chr9 120706758 120707043 -3369129 + B4A SINE B4 1 285 -7 4 1505 333 0 0 0 chr9 120707212 120707249 -3368923 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1505 808 175 58 0 chr9 120709401 120709555 -3366617 + B3 SINE B2 4 166 -50 4 1505 450 0 0 0 chr9 120709557 120709607 -3366565 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1505 1144 185 0 0 chr9 120709609 120709798 -3366374 + ORR1C2 LTR MaLR 192 380 -4 4 1505 420 315 56 11 chr9 120709851 120710031 -3366141 - LTR16C LTR ERVL -14 475 288 4 1505 289 254 344 8 chr9 120710040 120710171 -3366001 + Charlie12 DNA MER1_type 1 175 -2698 4 1505 409 248 136 8 chr9 120710067 120710185 -3365987 - RMER30 DNA MER1_type -48 154 22 4 1505 21 57 0 0 chr9 120710251 120710286 -3365886 + AT_rich Low_complexity Low_complexity 1 35 0 4 1505 620 220 0 11 chr9 120710328 120710503 -3365669 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 4 1505 779 279 65 58 chr9 120710508 120710600 -3365572 - B4A SINE B4 0 292 201 4 1505 1193 70 0 0 chr9 120710600 120710742 -3365430 + B1_Mus1 SINE Alu 5 146 -2 4 1505 207 0 0 0 chr9 120710742 120710765 -3365407 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1505 779 279 65 58 chr9 120710765 120710949 -3365223 - B4A SINE B4 -92 200 14 4 1505 931 74 31 0 chr9 120712183 120712346 -3363826 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 1505 1577 239 25 31 chr9 120712370 120712754 -3363418 - MTEb LTR MaLR 0 370 1 4 1505 247 361 77 48 chr9 120713031 120713304 -3362868 - L2 LINE L2 -670 2749 2469 4 1505 312 276 73 12 chr9 120713304 120713469 -3362703 + (GGATG)n Simple_repeat Simple_repeat 2 176 0 4 1505 431 294 156 14 chr9 120714704 120714980 -3361192 - Lx8 LINE L1 -260 7213 6899 4 1505 440 35 17 0 chr9 120716092 120716150 -3360022 + (CTG)n Simple_repeat Simple_repeat 2 60 0 4 1505 764 188 0 8 chr9 120716401 120716672 -3359500 + (CA)n Simple_repeat Simple_repeat 1 268 0 4 1505 354 247 97 0 chr9 120716672 120716765 -3359407 + RSINE1 SINE B4 3 104 -61 4 1505 628 269 14 37 chr9 120716868 120717084 -3359088 - L1MA4A LINE L1 -359 5944 5734 4 1506 260 259 11 86 chr9 120717782 120717875 -3358297 + MIRb SINE MIR 169 254 -14 4 1506 574 258 37 29 chr9 120718355 120718491 -3357681 + RSINE1 SINE B4 29 165 0 4 1506 191 200 0 57 chr9 120719195 120719248 -3356924 - L2 LINE L2 -2565 854 805 4 1506 2139 149 103 8 chr9 120719377 120719757 -3356415 - MTC LTR MaLR 0 421 6 4 1506 488 184 19 48 chr9 120719799 120719902 -3356270 - B4 SINE B4 -69 223 124 4 1506 270 0 0 0 chr9 120721576 120721606 -3354566 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1506 295 379 17 78 chr9 120721847 120722079 -3354093 + LTR16B1 LTR ERVL 4 221 -259 4 1506 219 215 0 58 chr9 120722089 120722158 -3354014 + G-rich Low_complexity Low_complexity 5 69 0 5 1506 359 270 27 9 chr9 120722800 120722912 -3353260 + CT-rich Low_complexity Low_complexity 2 115 0 5 1506 26 30 0 0 chr9 120723167 120723200 -3352972 + AT_rich Low_complexity Low_complexity 1 33 0 5 1506 340 225 12 0 chr9 120723886 120723966 -3352206 - L1MC3 LINE L1 -269 7516 7436 5 1506 690 270 24 30 chr9 120724105 120724269 -3351903 + RSINE1 SINE B4 3 165 0 5 1506 687 57 0 0 chr9 120724663 120724751 -3351421 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 1506 2653 102 32 32 chr9 120724751 120725155 -3351017 - MTC LTR MaLR -17 404 1 5 1506 378 0 0 0 chr9 120725155 120725197 -3350975 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1506 1097 223 106 109 chr9 120725449 120725816 -3350356 + MTE2a LTR MaLR 5 370 -9 5 1506 227 191 43 87 chr9 120725872 120725904 -3350268 + MER3 DNA MER1_type 21 49 -160 5 1506 304 264 11 102 chr9 120725904 120726081 -3350091 - MER3 DNA MER1_type 0 209 49 5 1506 256 274 94 12 chr9 120726589 120726674 -3349498 - MLT1K LTR MaLR -344 251 160 5 1506 711 267 299 13 chr9 120726713 120726937 -3349235 + B4 SINE B4 1 288 -4 5 1506 520 249 152 45 chr9 120728148 120728302 -3347870 + B3A SINE B2 1 180 -18 5 1506 621 72 0 0 chr9 120728302 120728385 -3347787 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1506 520 249 152 45 chr9 120728385 120728407 -3347765 + B3A SINE B2 181 196 -2 5 1506 780 285 40 10 chr9 120728679 120728880 -3347292 + B4 SINE B4 4 210 -82 5 1506 925 277 21 5 chr9 120728880 120729069 -3347103 + ORR1D2 LTR MaLR 1 192 -178 5 1506 450 301 143 9 chr9 120729082 120729313 -3346859 + Ricksha_c DNA MuDR 587 848 -1200 5 1506 202 224 24 0 chr9 120729315 120729400 -3346772 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 5 1506 584 143 39 7 chr9 120729413 120729568 -3346604 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 5 1506 276 190 99 0 chr9 120729590 120729711 -3346461 + (TAGA)n Simple_repeat Simple_repeat 3 135 0 5 1506 635 288 49 77 chr9 120730577 120730863 -3345309 - MER102b DNA MER1_type -46 295 18 5 1506 782 267 94 0 chr9 120730972 120731174 -3344998 - ID_B1 SINE B4 -1 223 3 5 1506 220 274 27 27 chr9 120731175 120731250 -3344922 - MER5A DNA MER1_type -114 75 1 5 1506 311 104 0 40 chr9 120731786 120731836 -3344336 - HAL1-3A_ME LINE L1 -836 2022 1975 5 1506 343 293 11 0 chr9 120731844 120732018 -3344154 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 1506 864 279 62 18 chr9 120732041 120732315 -3343857 - B4A SINE B4 -6 286 1 5 1506 1012 238 9 32 chr9 120732319 120732540 -3343632 - B3 SINE B2 0 216 1 5 1506 545 345 41 31 chr9 120732548 120732701 -3343471 - L1MA6 LINE L1 -1 6299 6138 5 1506 2064 177 78 43 chr9 120732701 120733239 -3342933 + RLTR31B_Mm LTR ERVK 1 557 0 5 1506 545 345 41 31 chr9 120733239 120733378 -3342794 - L1MA6 LINE L1 -163 6137 6004 5 1506 861 262 156 6 chr9 120733561 120733887 -3342285 - MTEa LTR MaLR 0 379 5 5 1506 189 0 0 0 chr9 120734000 120734021 -3342151 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1506 226 0 29 29 chr9 120734261 120734296 -3341876 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1506 902 290 70 4 chr9 120734540 120734791 -3341381 + B4A SINE B4 1 270 -22 5 1506 258 32 0 0 chr9 120734791 120734822 -3341350 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1506 902 290 70 4 chr9 120734822 120734840 -3341332 + B4A SINE B4 271 288 -4 5 1506 238 184 0 0 chr9 120735698 120735736 -3340436 + MER44D DNA MER2_type 32 69 -636 5 1506 422 157 0 0 chr9 120735752 120735835 -3340337 + (TGG)n Simple_repeat Simple_repeat 1 83 0 5 1506 365 283 171 31 chr9 120735835 120735977 -3340195 + MER44D DNA MER2_type 439 592 -113 5 1506 288 0 0 0 chr9 120735977 120736009 -3340163 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1506 365 283 171 31 chr9 120736009 120736059 -3340113 + MER44D DNA MER2_type 593 658 -47 5 1506 3053 77 12 29 chr9 120737023 120737437 -3338735 + MTB_Mm LTR MaLR 1 407 0 5 1506 939 137 0 0 chr9 120737779 120737940 -3338232 + (TGGA)n Simple_repeat Simple_repeat 2 162 0 5 1506 296 310 105 39 chr9 120738060 120738241 -3337931 + Charlie8 DNA MER1_type 40 232 -2196 5 1506 180 0 0 0 chr9 120738254 120738274 -3337898 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1506 1186 68 0 0 chr9 120738274 120738421 -3337751 - B1_Mus1 SINE Alu 0 148 2 5 1506 275 330 57 51 chr9 120738610 120738788 -3337384 - MIRb SINE MIR -58 210 31 5 1506 546 272 7 0 chr9 120738845 120738981 -3337191 + Lx8 LINE L1 7000 7136 -337 5 1506 448 192 194 67 chr9 120738983 120739117 -3337055 + MTEb LTR MaLR 225 375 -4 5 1506 312 269 0 0 chr9 120739186 120739253 -3336919 - MLT1K LTR MaLR -344 251 185 5 1506 287 269 52 41 chr9 120739696 120739793 -3336379 - LTR16C LTR ERVL -17 472 375 5 1506 396 322 39 19 chr9 120739949 120740104 -3336068 - Arthur1B DNA Tip100 -954 271 114 5 1506 349 252 110 14 chr9 120740902 120741047 -3335125 + Lx5 LINE L1 6891 7049 -1 5 1506 655 255 62 5 chr9 120741072 120741265 -3334907 + B3 SINE B2 13 216 0 5 1506 480 251 157 6 chr9 120741382 120741554 -3334618 + RMER30 DNA MER1_type 2 199 -3 5 1506 323 350 70 0 chr9 120742808 120742951 -3333221 - MER46C DNA MER2_type -8 330 178 5 1506 915 299 28 135 chr9 120743072 120743330 -3332842 - MTEa LTR MaLR -2 377 151 5 1506 1065 258 71 18 chr9 120743330 120743669 -3332503 + ORR1E LTR MaLR 1 357 -2 5 1506 915 299 28 135 chr9 120743669 120743832 -3332340 - MTEa LTR MaLR -229 150 1 5 1506 940 126 341 0 chr9 120744003 120744170 -3332002 - URR1B DNA MER1_type 0 225 2 5 1506 440 366 51 8 chr9 120745112 120745349 -3330823 + LTR16E1 LTR ERVL 260 506 -32 5 1506 298 197 182 0 chr9 120745492 120745558 -3330614 + B4A SINE B4 5 82 -210 5 1506 2301 63 9 95 chr9 120745645 120745925 -3330247 + ORR1A2 LTR MaLR 1 272 -55 5 1506 1188 55 0 14 chr9 120745925 120746073 -3330099 + B1_Mus1 SINE Alu 2 147 -1 5 1506 2301 63 9 95 chr9 120746073 120746141 -3330031 + ORR1A2 LTR MaLR 273 319 -8 5 1506 1301 273 83 0 chr9 120746899 120747247 -3328925 - MTEa LTR MaLR 0 379 3 5 1506 218 261 42 74 chr9 120747270 120747365 -3328807 + MIR SINE MIR 25 116 -146 5 1506 1167 181 19 19 chr9 120747598 120747806 -3328366 - B3 SINE B2 -7 209 2 5 1506 261 286 66 120 chr9 120748320 120748481 -3327691 - RLTR21 LTR ERVK -104 1468 1315 5 1506 340 332 100 61 chr9 120748481 120748760 -3327412 + B4 SINE B4 3 292 0 5 1506 261 286 66 120 chr9 120748760 120748991 -3327181 - RLTR21 LTR ERVK -258 1314 1098 5 1506 307 253 13 0 chr9 120748993 120749068 -3327104 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1506 253 250 43 43 chr9 120749222 120749314 -3326858 + L2b LINE L2 3099 3190 -185 5 1506 439 219 297 0 chr9 120749452 120749607 -3326565 + MTC LTR MaLR 8 208 -211 5 1506 768 138 20 92 chr9 120749636 120749788 -3326384 + B1_Mus1 SINE Alu 8 148 0 5 1506 529 226 239 16 chr9 120749797 120749981 -3326191 + MTC LTR MaLR 197 421 0 5 1506 194 81 27 0 chr9 120750092 120750129 -3326043 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1506 334 367 97 16 chr9 120750216 120750526 -3325646 - L1MD LINE L1 -764 5382 5048 5 1506 1463 162 183 6 chr9 120750632 120750955 -3325217 - MTD LTR MaLR -39 380 1 5 1506 559 311 56 30 chr9 120750956 120751258 -3324914 - L1M2 LINE L1 -1013 4864 4555 5 1506 522 218 24 159 chr9 120751259 120751466 -3324706 + RLTR20B1 LTR ERVK 133 311 -252 5 1506 1010 213 25 29 chr9 120751455 120751756 -3324416 + RLTR20B1 LTR ERVK 130 430 -130 5 1506 731 169 96 0 chr9 120751737 120751873 -3324299 - RLTR20B1 LTR ERVK -414 149 1 5 1506 1611 21 27 0 chr9 120753938 120754126 -3322046 + B2_Mm1t SINE B2 1 193 0 5 1506 403 202 9 9 chr9 120754213 120754318 -3321854 + GA-rich Low_complexity Low_complexity 3 107 0 5 1506 409 254 61 35 chr9 120754329 120754443 -3321729 + PB1D10 SINE Alu 1 117 0 5 1506 706 245 111 35 chr9 120754878 120755077 -3321095 + B3 SINE B2 1 214 -2 5 1506 249 310 11 11 chr9 120755362 120755450 -3320722 + GA-rich Low_complexity Low_complexity 5 92 0 5 1506 1258 41 7 0 chr9 120755728 120755875 -3320297 - B1_Mus1 SINE Alu 0 148 1 5 1506 492 320 154 16 chr9 120755987 120756438 -3319734 - MT2A LTR ERVL -2 531 1 5 1506 600 119 0 0 chr9 120756655 120756773 -3319399 + (TG)n Simple_repeat Simple_repeat 2 119 0 5 1506 447 324 59 0 chr9 120756774 120756996 -3319176 - L1ME3A LINE L1 -289 5884 5650 5 1506 208 239 0 0 chr9 120756999 120757045 -3319127 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 5 1506 624 220 28 7 chr9 120757146 120757288 -3318884 + B1F SINE Alu 4 148 -1 5 1506 657 189 0 0 chr9 120757347 120757598 -3318574 + (TG)n Simple_repeat Simple_repeat 1 251 0 5 1506 399 223 0 0 chr9 120757639 120757787 -3318385 + (TG)n Simple_repeat Simple_repeat 1 148 0 5 1506 221 77 51 0 chr9 120757795 120757834 -3318338 + (TCTCTG)n Simple_repeat Simple_repeat 6 46 0 5 1506 562 282 45 0 chr9 120757845 120758001 -3318171 - RSINE1 SINE B4 0 165 3 5 1506 308 155 103 0 chr9 120759609 120759667 -3316505 - HAL1-3A_ME LINE L1 -818 2040 1977 5 1506 180 200 0 0 chr9 120759695 120759735 -3316437 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1506 606 267 152 88 chr9 120759797 120760060 -3316112 - B4A SINE B4 -10 282 3 5 1506 186 250 45 0 chr9 120760560 120760604 -3315568 + L3b LINE CR1 436 481 -1 5 1506 417 20 0 0 chr9 120760636 120760686 -3315486 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1506 250 306 218 30 chr9 120760978 120761032 -3315140 + MIRb SINE MIR 29 83 -185 5 1506 1064 228 85 15 chr9 120761032 120761304 -3314868 - B4A SINE B4 -1 291 1 5 1506 250 306 218 30 chr9 120761304 120761451 -3314721 + MIRb SINE MIR 84 268 0 5 1506 267 342 68 0 chr9 120762026 120762099 -3314073 + MTEa LTR MaLR 45 122 -257 5 1506 311 329 46 53 chr9 120762166 120762317 -3313855 + MT2A LTR ERVL 190 339 -194 5 1506 776 247 5 37 chr9 120763011 120763200 -3312972 - B3A SINE B2 -14 184 2 5 1506 201 318 136 0 chr9 120764066 120764154 -3312018 - MIRb SINE MIR -46 222 123 5 1506 1051 247 86 4 chr9 120764155 120764411 -3311761 + B4 SINE B4 2 278 -14 5 1506 389 36 18 0 chr9 120764423 120764478 -3311694 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1506 187 213 361 0 chr9 120764479 120764540 -3311632 - MIRb SINE MIR -138 130 48 6 1506 375 312 73 76 chr9 120764779 120765067 -3311105 - MLT1H LTR MaLR -2 547 261 6 1506 180 0 0 0 chr9 120765086 120765106 -3311066 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1506 189 0 0 0 chr9 120765110 120765131 -3311041 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1506 766 103 94 0 chr9 120765137 120765254 -3310918 - B1_Mus1 SINE Alu 0 148 21 6 1506 580 332 46 5 chr9 120765259 120765456 -3310716 - MLT1H LTR MaLR -298 251 47 6 1506 689 204 29 0 chr9 120767173 120767310 -3308862 + B3A SINE B2 2 142 -56 6 1506 440 192 10 0 chr9 120767339 120767443 -3308729 + CT-rich Low_complexity Low_complexity 3 107 0 6 1506 302 196 39 0 chr9 120767443 120767494 -3308678 + B3 SINE B2 126 178 -38 6 1506 699 242 14 76 chr9 120767493 120767723 -3308449 - MTEa LTR MaLR -31 348 103 6 1506 374 330 150 15 chr9 120767754 120768080 -3308092 + L2 LINE L2 2559 2928 -491 6 1506 588 241 35 25 chr9 120768115 120768293 -3307879 - MTD LTR MaLR 0 419 185 6 1506 549 316 152 22 chr9 120768506 120768829 -3307343 - L1MDa LINE L1 -6241 392 28 6 1506 326 356 48 0 chr9 120768939 120769043 -3307129 - L1M5 LINE L1 -294 5830 5722 6 1506 624 216 14 0 chr9 120769586 120769885 -3306287 + (TG)n Simple_repeat Simple_repeat 1 303 0 6 1506 643 281 49 92 chr9 120769932 120770237 -3305935 - B4A SINE B4 0 292 1 6 1506 650 278 61 0 chr9 120770295 120770475 -3305697 - MER3 DNA MER1_type -15 194 4 6 1506 491 260 21 0 chr9 120770872 120770968 -3305204 + PB1D7 SINE Alu 11 108 -12 6 1506 624 314 37 51 chr9 120771897 120772192 -3303980 + B4 SINE B4 2 292 0 6 1506 306 0 0 0 chr9 120772264 120772298 -3303874 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1506 360 148 0 0 chr9 120772295 120772356 -3303816 + (GAA)n Simple_repeat Simple_repeat 3 63 0 6 1506 265 347 74 39 chr9 120772590 120772848 -3303324 + LTR16A1 LTR ERVL 190 456 0 6 1506 237 292 44 61 chr9 120773128 120773281 -3302891 - MTA_Mm LTR MaLR -113 283 18 6 1506 739 218 48 0 chr9 120773467 120773614 -3302558 + B3A SINE B2 1 154 -44 6 1506 392 97 0 16 chr9 120773614 120773677 -3302495 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1506 22 0 0 0 chr9 120773679 120773701 -3302471 + AT_rich Low_complexity Low_complexity 1 22 0 6 1506 393 75 0 0 chr9 120774092 120774145 -3302027 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1506 212 347 0 0 chr9 120774604 120774676 -3301496 + GA-rich Low_complexity Low_complexity 2 73 0 6 1506 308 289 20 10 chr9 120774816 120774914 -3301258 + L1M LINE L1 5262 5360 -999 6 1506 574 285 85 15 chr9 120774946 120775206 -3300966 + B4 SINE B4 4 281 -11 6 1506 405 0 0 0 chr9 120775257 120775302 -3300870 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1506 238 207 16 49 chr9 120775501 120775562 -3300610 + L2b LINE L2 3303 3361 -14 6 1506 310 283 25 40 chr9 120776264 120776406 -3299766 - MIRc SINE MIR -22 186 42 6 1506 702 253 19 0 chr9 120776452 120776610 -3299562 + RSINE1 SINE B4 4 164 -1 6 1506 267 31 0 0 chr9 120776610 120776642 -3299530 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 6 1506 446 384 43 13 chr9 120777005 120777237 -3298935 - LTR16C LTR ERVL -40 449 211 6 1506 1084 149 202 0 chr9 120777284 120777472 -3298700 - URR1A DNA MER1_type 0 226 1 6 1506 783 36 9 18 chr9 120778180 120778293 -3297879 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 6 1506 325 106 0 57 chr9 120778301 120778371 -3297801 + CT-rich Low_complexity Low_complexity 4 69 0 6 1506 231 301 93 29 chr9 120779260 120779400 -3296772 + LTR79 LTR ERVL 99 247 -280 6 1506 543 31 0 0 chr9 120779601 120779666 -3296506 + (TC)n Simple_repeat Simple_repeat 1 65 0 6 1506 413 276 238 0 chr9 120779679 120779864 -3296308 - LTR16C LTR ERVL -2 487 259 6 1506 385 308 8 8 chr9 120780585 120780716 -3295456 - MER113 DNA MER1_type -191 330 200 6 1506 498 108 0 0 chr9 120781152 120781226 -3294946 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1506 1619 142 49 95 chr9 120781376 120781703 -3294469 + ORR1A4 LTR MaLR 6 317 -12 6 1506 224 330 99 72 chr9 120781876 120782098 -3294074 + B4A SINE B4 9 236 -56 6 1506 292 314 12 0 chr9 120782076 120782162 -3294010 + RSINE1 SINE B4 79 165 0 6 1506 239 296 211 34 chr9 120782213 120782360 -3293812 + MamRep38 DNA hAT 2 174 -121 6 1506 257 146 302 0 chr9 120782902 120782998 -3293174 - Lx9 LINE L1 -3 7641 7517 6 1506 231 114 0 0 chr9 120783005 120783040 -3293132 + (TATG)n Simple_repeat Simple_repeat 2 36 0 6 1506 3274 179 31 8 chr9 120783043 120783686 -3292486 - Lx9 LINE L1 -179 7465 6808 6 1506 1338 243 9 49 chr9 120784174 120784499 -3291673 - RMER19C LTR ERVK -2 609 298 6 1506 21 36 0 0 chr9 120785395 120785423 -3290749 + AT_rich Low_complexity Low_complexity 1 28 0 6 1506 424 223 10 31 chr9 120786475 120786572 -3289600 + B1F1 SINE Alu 1 95 -54 6 1506 341 213 0 9 chr9 120786576 120786685 -3289487 + GA-rich Low_complexity Low_complexity 1 108 0 6 1506 1289 27 0 0 chr9 120786812 120786958 -3289214 + B1_Mus2 SINE Alu 2 147 0 6 1506 225 83 0 0 chr9 120786958 120786994 -3289178 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1506 1309 78 26 10 chr9 120787002 120787196 -3288976 - Lx4A LINE L1 -1099 5959 5763 6 1506 4005 123 58 1 chr9 120787189 120787856 -3288316 + Lx4B LINE L1 5932 6636 -422 6 1506 327 255 57 38 chr9 120787868 120787974 -3288198 + B3A SINE B2 75 182 -16 6 1506 318 80 0 0 chr9 120787974 120788024 -3288148 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1506 22 56 0 0 chr9 120788662 120788698 -3287474 + AT_rich Low_complexity Low_complexity 1 36 0 6 1506 182 287 0 9 chr9 120788762 120788878 -3287294 + (TG)n Simple_repeat Simple_repeat 2 116 0 6 1506 1048 183 20 30 chr9 120788908 120789105 -3287067 - B3A SINE B2 -2 196 2 6 1506 938 234 109 90 chr9 120790379 120790746 -3285426 - MTE2b LTR MaLR -4 375 2 6 1506 461 211 110 19 chr9 120791243 120791398 -3284774 + L1MB4 LINE L1 6014 6183 0 6 1506 23 0 0 0 chr9 120791429 120791452 -3284720 + AT_rich Low_complexity Low_complexity 1 23 0 6 1506 186 43 0 0 chr9 120791571 120791594 -3284578 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1506 306 0 0 0 chr9 120791894 120791928 -3284244 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 6 1506 2449 161 20 9 chr9 120792354 120792776 -3283396 - MTC LTR MaLR -7 414 1 6 1506 238 174 0 21 chr9 120792976 120793023 -3283149 + L2b LINE L2 3318 3363 -12 6 1506 1037 224 24 0 chr9 120793239 120793449 -3282723 - B3 SINE B2 -1 215 1 6 1506 1797 224 25 3 chr9 120793450 120793813 -3282359 + MTEa LTR MaLR 2 372 -7 6 1506 208 167 23 23 chr9 120795086 120795129 -3281043 + G-rich Low_complexity Low_complexity 4 46 0 6 1506 341 225 27 13 chr9 120795135 120795365 -3280807 + GA-rich Low_complexity Low_complexity 1 233 0 6 1506 306 321 136 21 chr9 120795368 120795508 -3280664 + HAL1-3A_ME LINE L1 2284 2439 -419 6 1506 22 35 0 0 chr9 120795809 120795838 -3280334 + AT_rich Low_complexity Low_complexity 1 29 0 6 1506 312 309 11 100 chr9 120795846 120795936 -3280236 - RSINE1 SINE B4 -2 163 82 6 1506 405 326 50 37 chr9 120795996 120796238 -3279934 - L1M5 LINE L1 -320 5804 5560 6 1506 271 385 59 27 chr9 120796257 120796476 -3279696 + MER46C DNA MER2_type 34 259 -79 6 1506 320 333 61 0 chr9 120796456 120796588 -3279584 + MER46C DNA MER2_type 197 336 -2 6 1506 313 39 19 19 chr9 120796788 120796840 -3279332 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1506 630 260 272 5 chr9 120797280 120797504 -3278668 + B4 SINE B4 1 284 -8 6 1506 427 190 0 54 chr9 120797590 120797774 -3278398 + (CA)n Simple_repeat Simple_repeat 2 175 0 6 1506 388 291 147 14 chr9 120798227 120798370 -3277802 + B4A SINE B4 112 273 -19 6 1506 417 39 0 0 chr9 120798428 120798479 -3277693 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1506 306 0 0 0 chr9 120798479 120798512 -3277660 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1506 790 253 35 61 chr9 120798917 120799115 -3277057 + B3A SINE B2 6 198 0 6 1506 375 23 0 0 chr9 120799363 120799407 -3276765 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1506 282 354 88 48 chr9 120799497 120799770 -3276402 - MLT2B3 LTR ERVL -7 547 264 6 1506 636 248 53 31 chr9 120799860 120800073 -3276099 - MTEa LTR MaLR -7 372 133 6 1506 932 288 29 32 chr9 120800073 120800389 -3275783 - ORR1D2 LTR MaLR -2 368 54 6 1506 450 114 0 0 chr9 120800461 120800531 -3275641 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 6 1506 318 300 89 0 chr9 120800673 120800763 -3275409 + MTE2b LTR MaLR 1 98 -281 6 1506 367 184 90 22 chr9 120800739 120800828 -3275344 + MTE2b LTR MaLR 28 122 -257 6 1506 279 260 0 27 chr9 120800762 120800837 -3275335 + MT2A LTR ERVL 57 129 -404 6 1506 235 91 30 0 chr9 120800835 120800868 -3275304 + MTE2b LTR MaLR 94 127 -252 6 1506 1010 254 35 62 chr9 120800995 120801285 -3274887 + MTE2b LTR MaLR 83 364 -15 6 1506 189 0 0 0 chr9 120801285 120801306 -3274866 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1506 1008 254 9 14 chr9 120801353 120801576 -3274596 - ID_B1 SINE B4 0 224 3 6 1506 243 0 0 0 chr9 120801584 120801611 -3274561 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 6 1506 403 190 8 90 chr9 120801611 120801723 -3274449 - PB1D10 SINE Alu -7 113 2 6 1506 222 218 35 35 chr9 120801678 120801735 -3274437 - B4A SINE B4 -155 137 81 6 1506 192 40 0 0 chr9 120801980 120802005 -3274167 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 6 1506 360 0 0 0 chr9 120802108 120802148 -3274024 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1506 207 0 0 0 chr9 120802488 120802511 -3273661 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1506 264 335 50 37 chr9 120803463 120803624 -3272548 - MIR3 SINE MIR -13 195 33 7 1506 453 262 26 65 chr9 120803779 120803934 -3272238 + MLT1A0 LTR MaLR 2 150 -215 7 1506 1201 241 142 6 chr9 120806085 120806431 -3269741 - MTD LTR MaLR -21 398 6 7 1506 288 0 0 0 chr9 120806950 120806982 -3269190 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1506 1304 156 52 0 chr9 120807120 120807332 -3268840 + URR1B DNA MER1_type 3 225 0 7 1506 1247 54 0 0 chr9 120807336 120807484 -3268688 + B1_Mus1 SINE Alu 1 148 0 7 1506 725 157 0 7 chr9 120807484 120807619 -3268553 + GA-rich Low_complexity Low_complexity 2 135 0 7 1506 1080 222 14 19 chr9 120808364 120808580 -3267592 + B3 SINE B2 1 215 -1 7 1506 336 292 31 0 chr9 120808706 120808811 -3267361 + PB1D10 SINE Alu 5 120 0 7 1506 437 219 306 23 chr9 120810531 120810704 -3265468 + ID_B1 SINE B4 3 224 0 7 1506 817 241 104 56 chr9 120811104 120811372 -3264800 + B4 SINE B4 2 282 -10 7 1506 1434 231 55 30 chr9 120812028 120812389 -3263783 + MTE2a LTR MaLR 2 371 -8 7 1506 647 254 139 5 chr9 120812443 120812637 -3263535 + ID_B1 SINE B4 1 220 -4 7 1506 1163 74 0 3 chr9 120812640 120812927 -3263245 + (CCAA)n Simple_repeat Simple_repeat 1 285 0 7 1506 260 317 232 18 chr9 120813379 120813508 -3262664 + MER20 DNA MER1_type 17 161 -58 7 1506 3351 43 2 5 chr9 120813508 120813905 -3262267 + MTA_Mm LTR MaLR 1 396 0 7 1506 260 317 232 18 chr9 120813905 120813939 -3262233 + MER20 DNA MER1_type 162 215 -4 7 1506 306 0 0 0 chr9 120814047 120814081 -3262091 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1506 372 22 0 0 chr9 120814160 120814205 -3261967 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1506 567 294 143 14 chr9 120814253 120814470 -3261702 - B4A SINE B4 -40 252 8 7 1506 381 22 0 0 chr9 120815283 120815329 -3260843 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1506 351 0 0 0 chr9 120815329 120815368 -3260804 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1506 690 100 0 0 chr9 120815466 120815566 -3260606 + (TC)n Simple_repeat Simple_repeat 1 100 0 7 1506 296 196 431 40 chr9 120815577 120815727 -3260445 - ID_B1 SINE B4 -16 208 1 7 1506 558 0 0 0 chr9 120815905 120815967 -3260205 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1506 2116 123 26 35 chr9 120816027 120816373 -3259799 - Lx4A LINE L1 0 7058 6716 7 1506 913 242 11 5 chr9 120816373 120816564 -3259608 - B4A SINE B4 -62 230 39 7 1506 1062 141 168 0 chr9 120816704 120816895 -3259277 + URR1B DNA MER1_type 1 223 -2 7 1506 275 221 88 0 chr9 120817056 120817124 -3259048 - MIR SINE MIR -107 155 82 7 1506 994 235 122 8 chr9 120817481 120817790 -3258382 + ORR1E LTR MaLR 1 368 -11 7 1506 192 250 15 30 chr9 120818251 120818317 -3257855 - L2c LINE L2 -306 3081 3017 7 1506 263 28 28 0 chr9 120818587 120818623 -3257549 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 7 1506 772 148 62 0 chr9 120818628 120818756 -3257416 + B1_Mus1 SINE Alu 1 136 -12 7 1506 947 134 6 16 chr9 120819375 120819557 -3256615 + GA-rich Low_complexity Low_complexity 1 180 0 7 1506 395 366 41 41 chr9 120820005 120820273 -3255899 + RMER15 LTR ERVL 308 575 0 7 1506 2425 52 16 25 chr9 120820391 120820410 -3255762 - L1Md_F2 LINE L1 -11 6571 6556 7 1506 1421 75 11 0 chr9 120820410 120820598 -3255574 - B2_Mm1a SINE B2 -3 190 1 7 1506 2425 52 16 25 chr9 120820598 120820897 -3255275 - L1Md_F2 LINE L1 -27 6555 6256 7 1506 21 0 0 0 chr9 120820897 120820918 -3255254 + AT_rich Low_complexity Low_complexity 1 21 0 7 1506 642 323 34 4 chr9 120820920 120821220 -3254952 - L1MA4 LINE L1 -368 5935 5585 7 1506 728 277 122 5 chr9 120821237 120821451 -3254721 + MTD LTR MaLR 95 333 -86 7 1506 225 154 0 0 chr9 120822553 120822592 -3253580 + (ATG)n Simple_repeat Simple_repeat 1 39 0 7 1506 4267 187 119 34 chr9 120822910 120823955 -3252217 - Lx7 LINE L1 0 7696 6564 7 1506 614 264 80 145 chr9 120824139 120824476 -3251696 - ORR1E LTR MaLR -4 355 41 7 1506 667 200 31 91 chr9 120824560 120824758 -3251414 - B3A SINE B2 -13 185 2 7 1506 270 250 111 0 chr9 120824766 120824838 -3251334 - MER103 DNA DNA -78 88 9 7 1506 299 274 58 10 chr9 120825500 120825603 -3250569 + L1MA4 LINE L1 5367 5474 -826 7 1506 695 272 148 8 chr9 120825648 120825885 -3250287 - MTEa LTR MaLR -108 271 2 7 1506 1029 263 22 28 chr9 120825968 120826382 -3249790 + L1MA4 LINE L1 5541 5936 -367 7 1506 1263 148 9 46 chr9 120826506 120826545 -3249627 - B3 SINE B2 -5 211 179 7 1506 2082 101 15 51 chr9 120826545 120826879 -3249293 + RLTRETN_Mm LTR ERVK 1 322 0 7 1506 1263 148 9 46 chr9 120826879 120827058 -3249114 - B3 SINE B2 -38 178 1 7 1506 556 256 25 0 chr9 120827650 120827771 -3248401 - RSINE1 SINE B4 -2 163 40 7 1506 494 299 70 55 chr9 120828433 120828723 -3247449 - LTR16A1 LTR ERVL -22 429 146 7 1506 473 229 174 0 chr9 120829045 120829154 -3247018 + RSINE1 SINE B4 2 129 -36 7 1506 216 254 27 53 chr9 120829262 120829337 -3246835 + ID4 SINE ID 1 73 -10 7 1506 489 228 34 42 chr9 120829316 120829435 -3246737 + ID_B1 SINE B4 103 220 -4 7 1506 287 310 103 7 chr9 120829462 120829608 -3246564 + Helitron1Na_Mam RC Helitron 824 983 -79 7 1506 712 228 0 0 chr9 120829628 120829764 -3246408 + B1_Mur1 SINE Alu 1 136 -13 7 1506 1943 105 45 68 chr9 120829764 120830100 -3246072 + ORR1A4 LTR MaLR 2 329 0 7 1506 243 253 36 0 chr9 120830117 120830200 -3245972 - L1MB7 LINE L1 -5 6179 6094 7 1506 299 357 41 14 chr9 120830698 120830843 -3245329 + B4 SINE B4 1 149 -143 7 1506 500 190 14 21 chr9 120830843 120830988 -3245184 + CT-rich Low_complexity Low_complexity 2 145 0 7 1506 1340 212 125 46 chr9 120831697 120832048 -3244124 - MTEa LTR MaLR 0 379 1 7 1506 658 175 12 24 chr9 120832521 120832691 -3243481 + CT-rich Low_complexity Low_complexity 4 171 0 7 1506 198 209 0 0 chr9 120832724 120832767 -3243405 + C-rich Low_complexity Low_complexity 3 45 0 7 1506 1199 55 14 0 chr9 120833365 120833510 -3242662 + B1_Mm SINE Alu 1 147 0 7 1506 24 0 0 0 chr9 120833536 120833560 -3242612 + AT_rich Low_complexity Low_complexity 1 24 0 7 1506 596 278 15 0 chr9 120833673 120833806 -3242366 - RSINE1 SINE B4 -23 142 8 7 1506 322 261 15 0 chr9 120834869 120834934 -3241238 - ID4_ SINE ID -16 67 2 7 1506 533 198 8 0 chr9 120834970 120835096 -3241076 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 7 1506 830 253 82 0 chr9 120835116 120835298 -3240874 - B4 SINE B4 -95 197 1 7 1506 668 286 53 0 chr9 120835332 120835503 -3240669 - B3A SINE B2 -18 180 1 7 1506 185 0 40 0 chr9 120836680 120836705 -3239467 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1506 573 15 0 0 chr9 120837183 120837249 -3238923 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1506 22 0 0 0 chr9 120837759 120837781 -3238391 + AT_rich Low_complexity Low_complexity 1 22 0 7 1506 240 86 0 0 chr9 120839351 120839386 -3236786 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1506 180 0 0 0 chr9 120839961 120839981 -3236191 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1506 320 0 25 0 chr9 120840364 120840404 -3235768 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1506 195 129 0 0 chr9 120841192 120841223 -3234949 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1506 219 139 0 0 chr9 120841241 120841277 -3234895 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 7 1506 23 0 0 0 chr9 120842353 120842376 -3233796 + GC_rich Low_complexity Low_complexity 1 23 0 7 1506 25 0 0 0 chr9 120842484 120842509 -3233663 + GC_rich Low_complexity Low_complexity 1 25 0 7 1506 26 30 0 0 chr9 120842758 120842791 -3233381 + GC_rich Low_complexity Low_complexity 1 33 0 7 1506 202 269 31 25 chr9 120842806 120842966 -3233206 + G-rich Low_complexity Low_complexity 3 163 0 7 1506 392 261 79 48 chr9 120844384 120844404 -3231768 + CYRA11_Mm Unknown Y-chromosome 151 176 -441 7 1506 953 165 64 32 chr9 120844404 120844592 -3231580 - URR1B DNA MER1_type 0 225 32 7 1506 180 0 0 0 chr9 120844966 120844986 -3231186 + (AGGTG)n Simple_repeat Simple_repeat 3 22 0 7 1506 862 207 232 4 chr9 120846311 120846582 -3229590 - Lx9 LINE L1 -1 7643 7311 7 1506 1993 195 125 15 chr9 120846601 120847080 -3229092 + Lx9 LINE L1 6356 6887 -757 7 1506 232 159 298 24 chr9 120847423 120847507 -3228665 + PB1D7 SINE Alu 12 118 -2 7 1506 1086 182 51 0 chr9 120847780 120847994 -3228178 - URR1B DNA MER1_type 0 225 1 7 1507 1058 167 96 18 chr9 120848627 120848847 -3227325 + RLTR20B3 LTR ERVK 1 237 -340 7 1507 193 276 21 94 chr9 120848865 120848961 -3227211 + L4 LINE RTE 1819 1907 -122 7 1507 198 366 63 21 chr9 120849891 120849986 -3226186 + L2 LINE L2 822 920 -2499 7 1507 186 250 137 20 chr9 120850159 120850261 -3225911 + L2 LINE L2 1427 1540 -1879 7 1507 266 167 171 30 chr9 120851757 120851832 -3224340 + B1_Mur1 SINE Alu 40 149 0 7 1507 236 203 46 15 chr9 120854489 120854554 -3221618 + Lx7 LINE L1 7629 7695 -1 7 1507 252 0 0 0 chr9 120855107 120855135 -3221037 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1507 21 0 0 0 chr9 120855754 120855775 -3220397 + AT_rich Low_complexity Low_complexity 1 21 0 7 1507 632 254 94 12 chr9 120856230 120856542 -3219630 - Lx8 LINE L1 0 7473 7117 7 1507 297 0 0 0 chr9 120856586 120856619 -3219553 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1507 686 219 72 7 chr9 120856633 120856771 -3219401 - RSINE1 SINE B4 -16 149 3 7 1507 621 233 62 42 chr9 120861573 120861758 -3214414 - B3 SINE B2 -19 176 2 7 1507 187 278 38 129 chr9 120861861 120861993 -3214179 - MIR3 SINE MIR -88 120 1 7 1507 247 227 45 37 chr9 120863804 120863903 -3212269 - PB1 SINE Alu -29 120 28 8 1507 345 262 152 61 chr9 120876282 120876579 -3199593 + Lx8 LINE L1 7019 7342 -131 8 1507 324 0 0 0 chr9 120876643 120876679 -3199493 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 8 1507 1194 89 0 0 chr9 120876680 120876837 -3199335 - B2_Mm2 SINE B2 -37 158 2 8 1507 423 214 58 0 chr9 120878087 120878190 -3197982 + PB1D10 SINE Alu 1 109 -8 8 1507 682 304 0 6 chr9 120878201 120878370 -3197802 - B3A SINE B2 -30 168 1 8 1507 5317 164 69 13 chr9 120878966 120880342 -3195830 + L1_Mur3 LINE L1 927 2392 -3485 8 1507 3573 179 88 2 chr9 120880374 120881868 -3194304 + Lx5 LINE L1 5399 7035 -15 8 1507 668 173 293 0 chr9 120881895 120882045 -3194127 + MTEa LTR MaLR 131 324 -55 8 1507 758 337 62 58 chr9 120882621 120883021 -3193151 - MTD LTR MaLR -14 405 4 8 1507 185 217 50 0 chr9 120883102 120883162 -3193010 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 8 1507 459 0 0 0 chr9 120884049 120884100 -3192072 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1507 324 214 38 81 chr9 120884545 120884695 -3191477 - ORR1C1 LTR MaLR 0 421 228 8 1507 379 230 42 108 chr9 120885666 120885832 -3190340 + RLTR21 LTR ERVK 1171 1325 -247 8 1507 297 244 0 54 chr9 120885858 120886044 -3190128 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 8 1507 1587 166 171 6 chr9 120886465 120886780 -3189392 + ORR1B2 LTR MaLR 1 367 0 8 1507 317 197 0 13 chr9 120890407 120890484 -3185688 + GA-rich Low_complexity Low_complexity 1 76 0 8 1507 345 24 0 0 chr9 120891850 120891892 -3184280 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1507 919 284 10 52 chr9 120893175 120893465 -3182707 + B4 SINE B4 1 278 -14 8 1507 216 0 0 0 chr9 120893466 120893490 -3182682 + (TC)n Simple_repeat Simple_repeat 1 24 0 8 1507 348 83 0 0 chr9 120893490 120893537 -3182635 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1507 352 304 157 31 chr9 120893978 120894334 -3181838 - MLT1A1 LTR MaLR -2 406 6 8 1507 296 417 0 0 chr9 120894459 120894634 -3181538 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 8 1507 384 287 0 0 chr9 120896406 120896514 -3179658 - L1MC LINE L1 -1460 4686 4579 8 1507 676 351 60 38 chr9 120896571 120897207 -3178965 + L1MC1 LINE L1 5495 6144 -189 8 1507 297 265 112 0 chr9 120897335 120897433 -3178739 + L1MC1 LINE L1 6224 6332 -1 8 1507 384 341 6 0 chr9 120897718 120897891 -3178281 + (TG)n Simple_repeat Simple_repeat 1 174 0 8 1507 527 271 49 93 chr9 120898620 120898877 -3177295 + B4A SINE B4 1 287 -5 8 1507 294 164 0 0 chr9 120898882 120898937 -3177235 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 1507 783 104 0 0 chr9 120900034 120900149 -3176023 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 8 1507 323 316 85 12 chr9 120900607 120900866 -3175306 + L1M2 LINE L1 2315 2592 -4257 8 1507 1002 228 165 18 chr9 120900915 120901052 -3175120 - MTD LTR MaLR -30 389 235 8 1507 627 48 0 0 chr9 120901052 120901135 -3175037 + (GCTG)n Simple_repeat Simple_repeat 2 84 0 8 1507 1002 228 165 18 chr9 120901135 120901336 -3174836 - MTD LTR MaLR -185 234 3 8 1507 22 0 0 0 chr9 120901743 120901765 -3174407 + AT_rich Low_complexity Low_complexity 1 22 0 8 1507 441 0 0 0 chr9 120902428 120902477 -3173695 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1507 271 394 58 0 chr9 120902859 120903014 -3173158 + L1M4b LINE L1 557 720 -6614 8 1507 222 273 151 66 chr9 120903019 120903125 -3173047 + PB1D7 SINE Alu 1 115 -5 8 1507 474 244 191 6 chr9 120905054 120905227 -3170945 + B4A SINE B4 88 292 0 8 1507 378 321 9 26 chr9 120905441 120905556 -3170616 - PB1D10 SINE Alu 0 117 5 8 1507 773 233 26 21 chr9 120909475 120909668 -3166504 + ID_B1 SINE B4 29 222 -2 8 1507 200 284 0 15 chr9 120909766 120909834 -3166338 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 8 1507 198 0 0 0 chr9 120911373 120911395 -3164777 + (GCATG)n Simple_repeat Simple_repeat 4 25 0 8 1507 3110 34 26 0 chr9 120912344 120912730 -3163442 - MTA_Mm LTR MaLR 0 396 1 8 1507 785 289 98 63 chr9 120912892 120913258 -3162914 + MTEa LTR MaLR 1 379 0 8 1507 314 372 16 0 chr9 120913619 120913802 -3162370 - L1MD2 LINE L1 -350 6009 5824 8 1507 323 330 0 29 chr9 120914319 120914422 -3161750 + PB1D7 SINE Alu 12 111 -9 8 1507 491 204 53 9 chr9 120914681 120914795 -3161377 + PB1D9 SINE Alu 2 120 0 8 1507 719 158 0 168 chr9 120915456 120915623 -3160549 + B1_Mus2 SINE Alu 3 141 -6 8 1507 277 326 10 0 chr9 120916987 120917085 -3159087 + (CA)n Simple_repeat Simple_repeat 1 99 0 8 1507 396 0 0 0 chr9 120917110 120917154 -3159018 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1507 673 268 64 68 chr9 120918607 120918871 -3157301 + MER2 DNA MER2_type 83 345 0 8 1507 363 23 0 0 chr9 120919091 120919135 -3157037 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1507 203 344 0 0 chr9 120919162 120919255 -3156917 + (CA)n Simple_repeat Simple_repeat 1 93 0 8 1507 228 67 0 0 chr9 120919291 120919321 -3156851 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1507 275 269 0 13 chr9 120919348 120919427 -3156745 + (CA)n Simple_repeat Simple_repeat 1 78 0 8 1507 210 37 0 0 chr9 120920381 120920408 -3155764 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 8 1507 373 306 170 33 chr9 120920441 120920530 -3155642 - MLT2B1 LTR ERVL -60 460 370 8 1507 192 40 0 0 chr9 120920530 120920555 -3155617 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 8 1507 373 306 170 33 chr9 120920555 120920735 -3155437 - MLT2B1 LTR ERVL -151 369 155 8 1507 234 81 0 0 chr9 120922074 120922111 -3154061 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 8 1507 403 292 8 40 chr9 120922259 120922384 -3153788 - MER3 DNA MER1_type -7 202 82 8 1507 380 323 65 24 chr9 120922484 120922644 -3153528 - RCHARR1 DNA MER1_type -449 525 359 8 1507 1167 143 51 3 chr9 120922644 120922957 -3153215 + RLTR24 LTR ERV1 1 398 -131 8 1507 261 0 0 0 chr9 120923090 120923119 -3153053 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1507 279 0 0 0 chr9 120923119 120923149 -3153023 + (GA)n Simple_repeat Simple_repeat 1 31 0 8 1507 440 200 77 148 chr9 120923150 120923203 -3152969 - RCHARR1 DNA MER1_type -766 208 173 8 1507 315 0 0 0 chr9 120923203 120923238 -3152934 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1507 440 200 77 148 chr9 120923238 120923366 -3152806 - RCHARR1 DNA MER1_type -802 172 40 8 1507 303 271 29 0 chr9 120923661 120923731 -3152441 + B4 SINE B4 2 73 -219 8 1507 210 316 25 25 chr9 120923731 120923742 -3152430 + ID4_ SINE ID 2 82 -1 8 1507 360 252 152 9 chr9 120923758 120923870 -3152302 + RSINE1 SINE B4 3 130 -35 8 1507 236 259 24 36 chr9 120923915 120923930 -3152242 + ID_B1 SINE B4 142 224 0 8 1507 516 43 0 0 chr9 120923930 120923999 -3152173 + B1_Mm SINE Alu 79 147 0 8 1507 225 0 0 0 chr9 120924164 120924189 -3151983 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1507 470 245 13 47 chr9 120925017 120925167 -3151005 - B1F SINE Alu -1 148 4 8 1507 1200 204 127 11 chr9 120926650 120926933 -3149239 + MTE2b LTR MaLR 43 358 -21 8 1507 263 250 130 56 chr9 120928325 120928486 -3147686 + RMER2 LTR ERV1 368 540 -27 8 1507 236 345 0 63 chr9 120928754 120928943 -3147229 + C-rich Low_complexity Low_complexity 3 179 0 8 1507 1242 174 197 71 chr9 120931747 120932112 -3144060 + MTD LTR MaLR 2 412 -7 8 1507 200 318 89 22 chr9 120932532 120932622 -3143550 + MIRm SINE MIR 159 254 -22 8 1507 462 206 157 142 chr9 120932840 120933044 -3143128 - MTEb LTR MaLR -37 342 136 8 1507 2791 5 5 118 chr9 120933799 120934213 -3141959 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1507 5465 88 94 18 chr9 120934215 120935231 -3140941 + IAPEz-int LTR ERVK 3 969 -5512 8 1507 25261 19 2 2 chr9 120935224 120938180 -3137992 + IAPEz-int LTR ERVK 3526 6481 0 8 1507 2791 5 5 118 chr9 120938180 120938594 -3137578 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1507 247 263 88 88 chr9 120939660 120939706 -3136466 + YREP_Mm Unknown Unknown 120 264 -1548 8 1507 542 230 23 53 chr9 120939706 120939839 -3136333 - ID_B1 SINE B4 0 224 96 8 1507 247 263 88 88 chr9 120939839 120939852 -3136320 + YREP_Mm Unknown Unknown 265 311 -1501 8 1507 225 247 61 12 chr9 120940366 120940448 -3135724 - RLTR25B LTR ERVK -94 934 849 8 1507 285 174 0 0 chr9 120940451 120940520 -3135652 + CT-rich Low_complexity Low_complexity 2 70 0 8 1507 368 278 25 42 chr9 120940647 120940767 -3135405 + B1F1 SINE Alu 9 126 -23 8 1507 238 280 13 51 chr9 120940735 120940814 -3135358 + B1_Mus2 SINE Alu 64 139 -8 8 1507 542 226 2 0 chr9 120940846 120941264 -3134908 + (CA)n Simple_repeat Simple_repeat 1 419 0 8 1507 351 223 149 0 chr9 120943535 120943629 -3132543 + B4A SINE B4 177 284 -8 8 1507 1016 191 25 10 chr9 120944244 120944440 -3131732 + B3 SINE B2 3 201 -15 8 1507 330 309 9 18 chr9 120944643 120944755 -3131417 + Tigger5 DNA MER2_type 2296 2406 0 8 1507 342 0 0 0 chr9 120944805 120944843 -3131329 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1507 683 266 19 0 chr9 120945201 120945359 -3130813 - RSINE1 SINE B4 -2 163 3 8 1507 477 270 45 13 chr9 120945816 120945970 -3130202 - RSINE1 SINE B4 -4 161 3 8 1507 231 356 45 8 chr9 120947943 120948076 -3128096 + RCHARR1 DNA MER1_type 9 146 -828 8 1507 929 208 116 12 chr9 120948088 120948346 -3127826 + Lx9 LINE L1 7359 7643 -1 8 1507 1690 243 111 29 chr9 120948537 120949050 -3127122 + RCHARR1 DNA MER1_type 419 973 -1 8 1507 601 128 139 41 chr9 120949406 120949528 -3126644 + B1_Mur4 SINE Alu 11 144 -6 8 1507 577 204 13 0 chr9 120949548 120949705 -3126467 + GA-rich Low_complexity Low_complexity 2 160 0 8 1507 1406 90 16 0 chr9 120953152 120953341 -3122831 + B2_Mm2 SINE B2 1 192 -3 8 1507 1277 41 0 0 chr9 120954763 120954909 -3121263 - B1_Mus2 SINE Alu 0 147 2 8 1507 22 0 0 0 chr9 120955116 120955138 -3121034 + AT_rich Low_complexity Low_complexity 1 22 0 8 1507 320 274 25 64 chr9 120955140 120955343 -3120829 - L1MD LINE L1 -994 5152 4958 8 1507 19769 170 28 104 chr9 120955602 120958847 -3117325 + Lx5 LINE L1 888 4171 -1709 8 1507 980 150 11 53 chr9 120958847 120959037 -3117135 + B2_Mm2 SINE B2 1 182 -13 8 1507 19769 166 28 113 chr9 120959037 120959690 -3116482 + Lx5 LINE L1 4172 4837 -1043 8 1507 3229 48 10 2 chr9 120959690 120960085 -3116087 - MTB LTR MaLR -2 398 1 8 1507 19769 166 28 113 chr9 120960085 120960253 -3115919 + Lx5 LINE L1 4838 4998 -882 8 1507 1258 176 188 30 chr9 120960253 120960588 -3115584 + MT2B LTR ERVL 1 541 -60 8 1507 339 25 0 0 chr9 120960588 120960628 -3115544 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1507 19769 166 28 113 chr9 120960628 120960730 -3115442 + Lx5 LINE L1 4999 5086 -1964 8 1507 301 43 83 42 chr9 120960730 120960778 -3115394 + MT2B2 LTR ERVL 535 584 0 9 1507 19769 166 28 113 chr9 120960778 120961386 -3114786 + Lx5 LINE L1 5087 5616 -1434 8 1507 3202 45 10 2 chr9 120961386 120961783 -3114389 - MTB LTR MaLR 0 400 1 9 1507 19769 209 61 49 chr9 120961783 120962567 -3113605 + Lx5 LINE L1 5611 6452 -598 8 1507 1361 265 104 38 chr9 120962417 120963069 -3113103 + Lx6 LINE L1 6518 7315 -145 9 1507 917 83 8 0 chr9 120963069 120963201 -3112971 + (TTTC)n Simple_repeat Simple_repeat 2 134 0 9 1507 795 253 181 78 chr9 120963201 120963361 -3112811 + Lx6 LINE L1 7316 7455 -5 9 1507 229 336 55 0 chr9 120963549 120963659 -3112513 - L1M4 LINE L1 -1443 4703 4588 9 1507 356 297 33 13 chr9 120964112 120964262 -3111910 - L1M4 LINE L1 -2069 4077 3925 9 1507 285 289 206 0 chr9 120964553 120964733 -3111439 - L1MD LINE L1 -2511 3635 3419 9 1507 236 307 0 22 chr9 120965163 120965253 -3110919 + C-rich Low_complexity Low_complexity 1 88 0 9 1507 633 260 57 24 chr9 120965450 120965698 -3110474 - L1MD LINE L1 -3102 3044 2789 9 1507 1147 239 54 32 chr9 120965706 120966021 -3110151 - MTE2b LTR MaLR -57 322 1 9 1507 457 252 106 41 chr9 120967639 120967809 -3108363 + MTEa LTR MaLR 144 324 -55 9 1507 372 286 46 69 chr9 120968626 120968799 -3107373 + ORR1E LTR MaLR 22 190 -169 9 1507 211 304 0 18 chr9 120969111 120969168 -3107004 + RSINE1 SINE B4 2 57 -108 9 1507 251 85 21 0 chr9 120969345 120969392 -3106780 + (CAA)n Simple_repeat Simple_repeat 1 48 0 9 1507 591 15 0 0 chr9 120969867 120969935 -3106237 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1507 569 277 166 16 chr9 120970262 120970515 -3105657 + B4A SINE B4 1 291 -1 9 1507 210 171 0 0 chr9 120970581 120970622 -3105550 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1507 422 255 99 9 chr9 120971740 120971851 -3104321 - RSINE1 SINE B4 -44 121 1 9 1507 500 335 31 0 chr9 120972198 120972359 -3103813 - MER2 DNA MER2_type -101 244 79 9 1507 426 145 53 0 chr9 120973207 120973283 -3102889 + B1_Mur2 SINE Alu 13 92 -57 9 1507 545 189 52 43 chr9 120973395 120973511 -3102661 + PB1D7 SINE Alu 1 117 -3 9 1507 701 133 35 9 chr9 120973514 120973628 -3102544 + B3A SINE B2 2 118 -80 9 1507 719 288 60 69 chr9 120974517 120974836 -3101336 + MTE2b LTR MaLR 70 379 0 9 1507 447 204 30 79 chr9 120975655 120975756 -3100416 - RSINE1 SINE B4 -17 148 53 9 1507 345 197 145 0 chr9 120975754 120975830 -3100342 + PB1D9 SINE Alu 29 115 -5 9 1507 614 281 18 24 chr9 120976883 120977047 -3099125 + RSINE1 SINE B4 3 165 0 9 1507 337 342 32 57 chr9 120977269 120977550 -3098622 + B4A SINE B4 2 282 -10 9 1507 512 301 146 51 chr9 120978495 120978810 -3097362 + RMER15 LTR ERVL 217 561 -14 9 1507 239 279 33 0 chr9 120979122 120979183 -3096989 - 5S rRNA rRNA -58 63 1 9 1508 243 0 0 0 chr9 120979800 120979827 -3096345 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1508 1291 27 0 0 chr9 120979827 120979973 -3096199 - B1_Mus2 SINE Alu 0 147 2 9 1508 651 199 36 29 chr9 120982030 120982170 -3094002 - B1F SINE Alu -3 146 6 9 1508 366 278 108 23 chr9 120982073 120982202 -3093970 - B4A SINE B4 -97 195 56 9 1508 365 244 24 0 chr9 120983504 120983586 -3092586 + B1_Mur1 SINE Alu 61 144 -5 9 1508 747 205 38 25 chr9 120983746 120983906 -3092266 - ORR1E LTR MaLR -194 165 4 9 1508 425 277 178 17 chr9 120984033 120984263 -3091909 + B4A SINE B4 4 270 -22 9 1508 387 0 0 0 chr9 120984295 120984338 -3091834 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1508 192 312 77 13 chr9 120984380 120984458 -3091714 - MIRc SINE MIR -166 102 20 9 1508 254 50 25 0 chr9 120984495 120984535 -3091637 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1508 1388 261 25 25 chr9 120984675 120985036 -3091136 - MTE2b LTR MaLR 0 379 19 9 1508 233 309 136 83 chr9 120986266 120986626 -3089546 - L2 LINE L2 -695 2724 2346 9 1508 297 217 33 0 chr9 120986926 120986986 -3089186 + tRNA-Ala-GCA tRNA tRNA 9 70 -5 9 1508 258 300 43 0 chr9 120987051 120987121 -3089051 + ID4 SINE ID 3 75 -8 9 1508 649 295 108 40 chr9 120987791 120988236 -3087936 - Lx8 LINE L1 -35 7438 6964 9 1508 319 280 9 0 chr9 120988267 120988368 -3087804 + Lx8 LINE L1 6768 6883 -590 9 1508 189 0 0 0 chr9 120989994 120990015 -3086157 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 9 1508 616 311 53 41 chr9 120990064 120990309 -3085863 + MTEa LTR MaLR 127 374 -5 9 1508 189 0 0 0 chr9 120990364 120990385 -3085787 + (TA)n Simple_repeat Simple_repeat 1 21 0 9 1508 192 329 25 0 chr9 120990977 120991056 -3085116 - MER5A DNA MER1_type -48 141 61 9 1508 204 40 0 0 chr9 120991056 120991081 -3085091 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1508 284 196 99 126 chr9 120992023 120992134 -3084038 + Charlie25 DNA MER1_type 819 926 -1598 9 1508 474 218 0 0 chr9 120992143 120992253 -3083919 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 9 1508 242 51 51 0 chr9 120992257 120992296 -3083876 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 9 1508 709 211 110 30 chr9 120992383 120992583 -3083589 - B3 SINE B2 0 216 1 9 1508 234 331 74 8 chr9 120993143 120993265 -3082907 + MLT1D LTR MaLR 54 183 -322 9 1508 228 314 83 49 chr9 120993378 120993522 -3082650 + MLT1D LTR MaLR 240 388 -2 9 1508 612 247 111 12 chr9 120994288 120994460 -3081712 + B3 SINE B2 15 203 -13 9 1508 230 246 16 0 chr9 120997086 120997147 -3079025 + L1ME4a LINE L1 6058 6119 -5 9 1508 224 318 0 76 chr9 120997646 120997738 -3078434 + ID4 SINE ID 3 87 -65 9 1508 297 0 0 0 chr9 121000638 121000671 -3075501 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1508 339 25 0 0 chr9 121000773 121000813 -3075359 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1508 678 284 31 0 chr9 121000815 121000977 -3075195 - B3A SINE B2 -31 167 1 3 1508 243 0 0 0 chr9 121001007 121001034 -3075138 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1508 688 216 54 0 chr9 121002126 121002274 -3073898 + B3A SINE B2 2 157 -41 5 1508 405 0 0 0 chr9 121002276 121002321 -3073851 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1508 306 0 0 0 chr9 121002321 121002354 -3073818 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1508 333 261 34 0 chr9 121002706 121002794 -3073378 + B3A SINE B2 1 91 -107 8 1508 454 282 65 0 chr9 121002809 121002979 -3073193 + L1M2 LINE L1 4598 4778 -1365 9 1508 290 303 73 9 chr9 121003335 121003445 -3072727 - L1M3e LINE L1 -6649 381 265 1 1508 228 228 0 50 chr9 121003631 121003691 -3072481 + MTEb LTR MaLR 58 114 -265 1 1508 1174 207 30 75 chr9 121003696 121004023 -3072149 + ORR1D1 LTR MaLR 7 334 -25 1 1508 402 21 0 0 chr9 121004241 121004288 -3071884 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1508 929 92 21 7 chr9 121004289 121004432 -3071740 - B2_Mm2 SINE B2 -50 145 1 1 1508 369 254 90 0 chr9 121005160 121005294 -3070878 + MTEb LTR MaLR 233 378 -1 1 1508 1284 235 42 62 chr9 121005355 121005709 -3070463 - ORR1E LTR MaLR -11 348 2 1 1508 348 321 14 14 chr9 121008233 121008402 -3067770 - L1M4 LINE L1 -801 5345 5183 1 1508 335 291 29 139 chr9 121009328 121009357 -3066815 + B4 SINE B4 65 217 -75 1 1508 804 174 0 5 chr9 121009357 121009500 -3066672 + B1_Mur2 SINE Alu 3 140 -9 1 1508 426 264 117 0 chr9 121010846 121011009 -3065163 + B3A SINE B2 1 182 -16 1 1508 268 351 32 0 chr9 121011066 121011160 -3065012 + B1F1 SINE Alu 1 97 -52 2 1508 555 199 0 181 chr9 121011230 121011390 -3064782 - ID_B1 SINE B4 -2 222 92 2 1508 253 302 26 97 chr9 121011254 121011408 -3064764 - MT2B2 LTR ERVL -288 296 154 2 1508 261 0 0 0 chr9 121011632 121011661 -3064511 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1508 22 35 0 0 chr9 121011856 121011885 -3064287 + AT_rich Low_complexity Low_complexity 1 29 0 2 1508 299 243 27 0 chr9 121011909 121011983 -3064189 + ID_B1 SINE B4 94 169 -55 2 1508 340 175 9 21 chr9 121012586 121012682 -3063490 + B3 SINE B2 1 89 -109 2 1508 238 207 112 22 chr9 121012964 121013053 -3063119 - L1MD3 LINE L1 -169 7826 7730 2 1508 224 239 11 67 chr9 121013267 121013446 -3062726 + GA-rich Low_complexity Low_complexity 1 169 0 2 1508 319 221 16 65 chr9 121013471 121013655 -3062517 + GA-rich Low_complexity Low_complexity 1 175 0 2 1508 282 172 33 82 chr9 121013716 121013900 -3062272 + GA-rich Low_complexity Low_complexity 1 175 0 2 1508 298 256 6 43 chr9 121013925 121014088 -3062084 + G-rich Low_complexity Low_complexity 2 158 0 2 1508 306 0 0 0 chr9 121014876 121014910 -3061262 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1508 342 0 0 0 chr9 121014910 121014947 -3061225 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1508 347 177 0 16 chr9 121015709 121015772 -3060400 + MTEa LTR MaLR 1 62 -317 3 1508 401 303 18 49 chr9 121017391 121017554 -3058618 - B3 SINE B2 -53 163 6 3 1508 279 244 24 12 chr9 121018174 121018257 -3057915 + B4A SINE B4 2 85 -207 3 1508 208 333 0 0 chr9 121018386 121018455 -3057717 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1508 288 0 0 0 chr9 121018739 121018771 -3057401 + (CACG)n Simple_repeat Simple_repeat 1 32 0 3 1508 2232 133 258 25 chr9 121019830 121020466 -3055706 + ORR1A3-int LTR MaLR 1034 1772 -191 3 1508 2920 155 43 27 chr9 121020473 121021106 -3055066 + RLTR22_Mur LTR ERVK 184 1147 -257 3 1508 2639 198 80 61 chr9 121021087 121021904 -3054268 + RLTR22_Mur LTR ERVK 811 1661 -187 3 1508 3051 118 80 98 chr9 121021904 121022588 -3053584 - RMER6A LTR ERVK -22 734 63 3 1508 249 196 54 0 chr9 121022686 121022742 -3053430 + GA-rich Low_complexity Low_complexity 3 61 0 4 1508 229 250 40 27 chr9 121022933 121023007 -3053165 + B1_Mm SINE Alu 17 91 -56 4 1508 217 301 0 64 chr9 121023057 121023135 -3053037 + ID4_ SINE ID 9 81 -2 4 1508 675 302 46 68 chr9 121023788 121024200 -3051972 + BGLII_B LTR ERVK 7 409 -32 4 1508 354 211 0 13 chr9 121024860 121024937 -3051235 - HAL1-3A_ME LINE L1 -807 2051 1976 4 1508 462 204 0 0 chr9 121024940 121025038 -3051134 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 1508 578 236 169 6 chr9 121025056 121025239 -3050933 + B3 SINE B2 1 213 -3 4 1508 659 318 83 28 chr9 121025456 121025783 -3050389 + ORR1E LTR MaLR 1 345 -14 4 1508 456 19 0 0 chr9 121026217 121026270 -3049902 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 4 1508 423 0 0 0 chr9 121026377 121026424 -3049748 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1508 501 227 84 0 chr9 121026850 121026969 -3049203 + B3 SINE B2 2 130 -86 5 1508 429 303 52 52 chr9 121028262 121028568 -3047604 - B4 SINE B4 -25 267 2 5 1508 486 298 126 24 chr9 121029881 121030135 -3046037 + B4A SINE B4 13 292 0 5 1508 333 0 0 0 chr9 121030805 121030842 -3045330 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1508 240 287 68 19 chr9 121031044 121031147 -3045025 - MTE2b LTR MaLR -133 246 139 5 1508 225 296 173 29 chr9 121031313 121031452 -3044720 + RMER21A LTR ERV1 532 690 -257 5 1508 277 175 75 81 chr9 121031789 121031963 -3044209 + (CATGC)n Simple_repeat Simple_repeat 1 173 0 5 1508 261 234 323 0 chr9 121032088 121032246 -3043926 - Kanga1 DNA Tc2 -28 1717 1509 5 1508 583 177 146 66 chr9 121032594 121032745 -3043427 + RSINE1 SINE B4 3 165 0 5 1508 1443 291 125 18 chr9 121033049 121033693 -3042479 + Lx8 LINE L1 6782 7466 -7 5 1508 335 121 17 0 chr9 121035420 121035478 -3040694 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 6 1508 356 308 33 40 chr9 121036270 121036422 -3039750 - MER58A DNA MER1_type -22 202 52 6 1508 738 235 0 7 chr9 121036453 121036603 -3039569 + B3A SINE B2 4 152 -46 6 1508 216 200 0 0 chr9 121037077 121037122 -3039050 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1508 876 152 11 17 chr9 121037119 121037163 -3039009 + (CACG)n Simple_repeat Simple_repeat 1 42 0 6 1508 1053 150 0 0 chr9 121037163 121037343 -3038829 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1508 876 152 11 17 chr9 121037343 121037478 -3038694 + (CACG)n Simple_repeat Simple_repeat 3 139 0 6 1508 425 275 25 0 chr9 121037484 121037604 -3038568 + B1F SINE Alu 27 149 0 6 1508 1996 267 118 16 chr9 121037680 121038418 -3037754 + Lx8 LINE L1 6628 7440 -33 6 1508 245 256 33 4 chr9 121038481 121038550 -3037622 + MTEb LTR MaLR 303 371 -8 6 1508 719 173 23 0 chr9 121038635 121038808 -3037364 + CT-rich Low_complexity Low_complexity 2 178 0 7 1508 506 317 134 55 chr9 121038977 121039284 -3036888 - MLT1G3 LTR MaLR -28 567 237 7 1508 338 240 70 53 chr9 121039656 121039800 -3036372 - MLT1E2 LTR MaLR -186 494 344 7 1508 294 148 0 0 chr9 121041930 121041984 -3034188 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1508 204 228 0 0 chr9 121042002 121042059 -3034113 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1508 207 0 0 0 chr9 121042551 121042574 -3033598 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 7 1508 588 276 51 17 chr9 121042912 121043089 -3033083 + B3A SINE B2 1 183 -15 7 1508 257 51 26 0 chr9 121043089 121043128 -3033044 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1508 378 114 0 0 chr9 121043133 121043203 -3032969 + (TCTCTG)n Simple_repeat Simple_repeat 3 72 0 7 1508 516 286 28 22 chr9 121043333 121043512 -3032660 + MER58B DNA MER1_type 20 199 -142 7 1508 242 260 0 0 chr9 121044037 121044087 -3032085 + G-rich Low_complexity Low_complexity 1 50 0 7 1508 300 102 0 0 chr9 121044087 121044136 -3032036 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 8 1508 801 165 0 8 chr9 121044400 121044666 -3031506 + (TG)n Simple_repeat Simple_repeat 1 263 0 8 1508 312 253 12 35 chr9 121044666 121044752 -3031420 - RSINE1 SINE B4 0 165 82 8 1508 1783 229 137 68 chr9 121044990 121046402 -3029770 + RMER12 LTR ERVK 1 1347 -57 8 1508 233 200 171 13 chr9 121046583 121046659 -3029513 + RMER5 LTR ERV1 165 252 -282 8 1508 408 268 82 41 chr9 121046699 121046870 -3029302 + RMER5 LTR ERV1 320 497 -37 8 1508 294 95 0 0 chr9 121046977 121047019 -3029153 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 8 1508 312 76 0 108 chr9 121047234 121047308 -3028864 - L1Md_F2 LINE L1 0 6582 6517 8 1508 1285 167 0 14 chr9 121047393 121047612 -3028560 - B3 SINE B2 0 216 1 8 1508 2184 145 29 5 chr9 121047620 121048002 -3028170 + MTC LTR MaLR 1 391 -30 8 1508 350 233 0 0 chr9 121048003 121048076 -3028096 - B1_Mur3 SINE Alu -74 75 3 8 1508 306 0 0 0 chr9 121048358 121048392 -3027780 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1508 285 227 273 0 chr9 121048994 121049104 -3027068 - MTD LTR MaLR 0 379 240 9 1508 348 164 27 0 chr9 121049121 121049194 -3026978 - MTD LTR MaLR -230 189 115 9 1508 455 276 34 77 chr9 121049447 121049682 -3026490 + RMER2 LTR ERV1 343 567 0 9 1508 369 247 32 0 chr9 121049683 121049776 -3026396 - MTD LTR MaLR -303 116 21 9 1508 450 234 70 42 chr9 121050226 121050369 -3025803 + B1F SINE Alu 3 149 0 9 1508 246 62 0 0 chr9 121050381 121050413 -3025759 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1508 333 221 0 0 chr9 121051525 121051670 -3024502 + (TG)n Simple_repeat Simple_repeat 2 146 0 9 1508 204 40 0 0 chr9 121052486 121052511 -3023661 + (CACCC)n Simple_repeat Simple_repeat 4 28 0 9 1508 497 192 106 15 chr9 121053446 121053578 -3022594 + B1F SINE Alu 6 149 0 9 1508 333 0 0 0 chr9 121054289 121054326 -3021846 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1508 275 235 70 96 chr9 121054620 121054760 -3021412 - MTEb LTR MaLR -44 335 207 9 1508 655 219 30 79 chr9 121055350 121055553 -3020619 + B3A SINE B2 2 194 -4 1 1508 324 70 0 0 chr9 121055969 121056012 -3020160 + (GGA)n Simple_repeat Simple_repeat 2 44 0 1 1508 442 367 0 6 chr9 121056300 121056481 -3019691 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1508 418 372 0 11 chr9 121056495 121056677 -3019495 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1508 542 350 0 0 chr9 121056739 121056919 -3019253 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1508 201 289 0 0 chr9 121056964 121057078 -3019094 + (CA)n Simple_repeat Simple_repeat 1 114 0 1 1508 214 300 0 0 chr9 121057092 121057152 -3019020 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1508 263 300 0 6 chr9 121057164 121057335 -3018837 + (CA)n Simple_repeat Simple_repeat 1 170 0 1 1508 189 317 0 0 chr9 121057349 121057491 -3018681 + (CA)n Simple_repeat Simple_repeat 1 142 0 1 1508 265 336 37 45 chr9 121057967 121058101 -3018071 + Charlie4 DNA MER1_type 1807 1939 -22 1 1508 252 0 0 0 chr9 121058891 121058919 -3017253 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1508 324 276 36 193 chr9 121059236 121059510 -3016662 - MTC LTR MaLR -177 244 14 1 1508 1642 21 0 25 chr9 121061548 121061746 -3014426 - B2_Mm1a SINE B2 0 193 1 1 1508 1431 72 17 0 chr9 121061790 121061971 -3014201 + B2_Mm2 SINE B2 2 185 -10 1 1508 537 16 0 0 chr9 121061977 121062039 -3014133 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1508 497 284 45 0 chr9 121062137 121062271 -3013901 + B3A SINE B2 57 196 -2 1 1508 21 36 0 0 chr9 121062297 121062325 -3013847 + AT_rich Low_complexity Low_complexity 1 28 0 1 1508 910 99 42 0 chr9 121062364 121062506 -3013666 - URR1A DNA MER1_type 0 226 79 1 1508 594 109 0 0 chr9 121062856 121062966 -3013206 + (T)n Simple_repeat Simple_repeat 1 110 0 1 1508 1269 41 0 0 chr9 121062966 121063113 -3013059 - B1_Mus2 SINE Alu 0 147 1 1 1508 292 333 59 8 chr9 121063244 121063362 -3012810 + B4A SINE B4 2 125 -167 1 1508 1441 182 178 6 chr9 121063397 121063728 -3012444 - MTD LTR MaLR -14 405 18 1 1508 276 256 230 8 chr9 121063748 121063874 -3012298 + B4A SINE B4 121 274 -18 1 1508 360 191 0 0 chr9 121064355 121064439 -3011733 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1508 657 266 38 6 chr9 121064439 121064598 -3011574 - RSINE1 SINE B4 0 165 2 1 1508 300 137 0 52 chr9 121064960 121065037 -3011135 + GA-rich Low_complexity Low_complexity 4 76 0 1 1508 576 29 0 0 chr9 121066549 121066619 -3009553 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1508 369 0 0 0 chr9 121066619 121066659 -3009513 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1508 858 216 67 91 chr9 121066659 121066868 -3009304 - ID_B1 SINE B4 -19 205 2 1 1508 917 196 71 0 chr9 121067157 121067341 -3008831 - B3A SINE B2 0 198 2 1 1508 461 285 127 30 chr9 121067774 121067908 -3008264 + B1F1 SINE Alu 3 149 0 1 1508 360 242 192 40 chr9 121067923 121068048 -3008124 + B4A SINE B4 81 224 -68 1 1508 647 171 18 18 chr9 121067938 121068051 -3008121 + PB1D9 SINE Alu 6 118 -2 1 1508 715 270 63 14 chr9 121068269 121068476 -3007696 - ID_B1 SINE B4 0 224 8 1 1508 750 162 0 0 chr9 121068870 121069006 -3007166 + GA-rich Low_complexity Low_complexity 2 137 0 1 1508 1099 112 6 6 chr9 121069008 121069188 -3006984 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1508 21 0 0 0 chr9 121069255 121069276 -3006896 + AT_rich Low_complexity Low_complexity 1 21 0 1 1508 374 291 0 73 chr9 121070046 121070205 -3005967 + MTEa LTR MaLR 26 196 -183 1 1508 303 239 106 86 chr9 121070347 121070498 -3005674 + MTEa LTR MaLR 182 335 -44 1 1508 656 278 75 34 chr9 121071652 121071920 -3004252 + B4A SINE B4 8 286 -6 1 1508 266 305 10 21 chr9 121071929 121072026 -3004146 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1508 644 269 33 39 chr9 121072041 121072223 -3003949 + ORR1E LTR MaLR 6 186 -173 1 1508 229 150 0 0 chr9 121072224 121072264 -3003908 + ORR1E LTR MaLR 331 370 0 1 1508 290 333 46 33 chr9 121072801 121072953 -3003219 - RSINE1 SINE B4 -8 157 4 1 1508 855 237 40 0 chr9 121073082 121073259 -3002913 - B3 SINE B2 -5 211 28 1 1508 286 252 460 9 chr9 121074310 121074410 -3001762 - RSINE1 SINE B4 -5 160 16 1 1508 340 391 16 8 chr9 121075585 121075714 -3000458 + RSINE1 SINE B4 20 149 -16 1 1508 343 320 33 70 chr9 121075728 121075943 -3000229 + L1MDb LINE L1 1265 1471 -5069 1 1508 226 231 50 25 chr9 121075978 121076058 -3000114 + L1MDb LINE L1 1570 1651 -4982 1 1508 294 291 11 44 chr9 121076347 121076437 -2999735 - B4 SINE B4 0 292 206 1 1508 485 154 11 0 chr9 121076775 121076866 -2999306 + G-rich Low_complexity Low_complexity 1 92 0 1 1508 211 121 0 29 chr9 121077080 121077114 -2999058 + PB1D7 SINE Alu 20 52 -68 1 1508 288 102 183 17 chr9 121077610 121077670 -2998502 - L1_Rod LINE L1 -780 5067 4998 1 1508 1757 11 0 0 chr9 121077775 121077966 -2998206 + B2_Mm1a SINE B2 1 191 -2 1 1508 201 39 0 0 chr9 121078373 121078399 -2997773 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1508 4375 145 101 71 chr9 121078399 121079273 -2996899 + RMER19B LTR ERVK 3 902 0 1 1508 585 133 0 0 chr9 121079648 121079746 -2996426 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 1508 334 289 141 23 chr9 121079776 121079953 -2996219 + HAL1 LINE L1 1741 1938 -569 1 1508 1933 188 46 31 chr9 121080372 121080785 -2995387 - MTD LTR MaLR 0 419 1 1 1508 376 262 90 70 chr9 121081183 121081339 -2994833 + B4 SINE B4 122 280 -12 1 1508 1168 164 43 0 chr9 121081741 121081948 -2994224 + B3 SINE B2 1 216 0 1 1508 358 320 55 73 chr9 121082237 121082266 -2993906 + B4 SINE B4 60 154 -138 1 1508 368 243 25 93 chr9 121082266 121082384 -2993788 + MT2B LTR ERVL 156 265 -336 1 1508 791 193 14 0 chr9 121082278 121082418 -2993754 + B1_Mur3 SINE Alu 6 147 -2 1 1508 358 320 55 73 chr9 121082384 121082402 -2993770 + B4 SINE B4 155 221 -71 1 1508 249 261 244 0 chr9 121082835 121082950 -2993222 + LTR87 LTR ERVL? 367 509 -115 1 1508 223 225 0 0 chr9 121083077 121083117 -2993055 + (CAGG)n Simple_repeat Simple_repeat 3 42 0 1 1508 1393 211 101 13 chr9 121083149 121083527 -2992645 - MTD LTR MaLR -9 398 10 1 1508 263 256 8 0 chr9 121083533 121083666 -2992506 + (TG)n Simple_repeat Simple_repeat 1 134 0 1 1508 616 273 19 32 chr9 121083672 121083827 -2992345 - RSINE1 SINE B4 0 165 13 1 1508 231 205 58 103 chr9 121083860 121083947 -2992225 + PB1D10 SINE Alu 30 112 -5 1 1508 244 237 0 17 chr9 121083889 121083949 -2992223 + ID_B1 SINE B4 163 221 -3 1 1508 306 323 101 16 chr9 121084378 121084507 -2991665 + L1MC5 LINE L1 6735 6874 -1087 1 1508 317 234 63 11 chr9 121084595 121084690 -2991482 + L1MC5 LINE L1 6980 7079 -882 1 1508 593 248 80 0 chr9 121085277 121085414 -2990758 + RSINE1 SINE B4 1 148 -17 1 1508 240 312 6 102 chr9 121085314 121085471 -2990701 + B2_Mm2 SINE B2 46 187 -8 1 1508 704 250 76 59 chr9 121086289 121086527 -2989645 + B4A SINE B4 1 242 -50 1 1508 945 270 71 43 chr9 121086536 121086961 -2989211 - RMER15 LTR ERVL -15 560 1 1 1508 353 363 75 82 chr9 121087058 121087484 -2988688 + L1MDa LINE L1 309 731 -5902 1 1508 4510 16 0 0 chr9 121087500 121087993 -2988179 - MT2_Mm LTR ERVL 0 493 1 1 1508 305 0 0 0 chr9 121087993 121088031 -2988141 - MERVL-int LTR ERVL 0 5485 5448 1 1508 399 167 46 35 chr9 121088031 121088118 -2988054 - ORR1A3-int LTR MaLR -1323 640 553 1 1508 19973 22 0 0 chr9 121088118 121090444 -2985728 - MERVL-int LTR ERVL -125 5360 3034 1 1508 23671 11 12 0 chr9 121090428 121093160 -2983012 - MERVL-int LTR ERVL -2720 2765 1 1 1508 4510 16 0 0 chr9 121093160 121093653 -2982519 - MT2_Mm LTR ERVL 0 493 1 1 1508 360 325 82 44 chr9 121093717 121093923 -2982249 + L1MDa LINE L1 831 1044 -5589 1 1508 302 250 101 38 chr9 121094571 121094596 -2981576 + AmnSINE1 SINE SINE 2 85 -490 1 1508 312 222 0 0 chr9 121094596 121094650 -2981522 + 5S rRNA rRNA 35 88 -33 1 1508 1611 198 145 99 chr9 121094703 121095248 -2980924 + RMER20B LTR ERVK 34 603 -24 1 1508 921 308 14 41 chr9 121095368 121095713 -2980459 - Lx6 LINE L1 0 7460 7125 1 1508 1300 204 60 101 chr9 121095872 121096238 -2979934 + MTE2b LTR MaLR 15 365 -14 1 1508 610 217 50 0 chr9 121098023 121098101 -2978071 + B3 SINE B2 1 84 -132 1 1508 1968 171 43 51 chr9 121098101 121098496 -2977676 + ORR1B1 LTR MaLR 3 394 0 1 1508 1270 48 0 0 chr9 121099050 121099197 -2976975 + B1_Mm SINE Alu 1 147 0 1 1508 702 133 0 0 chr9 121099197 121099310 -2976862 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 1 1508 1503 54 43 5 chr9 121099771 121099958 -2976214 + B2_Mm2 SINE B2 1 194 -1 1 1508 1228 79 0 11 chr9 121099964 121100144 -2976028 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 1508 1634 164 72 46 chr9 121100167 121100512 -2975660 - ORR1B1 LTR MaLR 0 394 41 1 1508 249 281 0 58 chr9 121101072 121101159 -2975013 + PB1D10 SINE Alu 7 88 -29 1 1508 233 293 107 41 chr9 121101159 121101193 -2974979 + ID_B1 SINE B4 88 216 -8 1 1508 441 95 0 0 chr9 121101201 121101264 -2974908 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 1 1508 286 224 45 0 chr9 121101292 121101359 -2974813 + ID4 SINE ID 1 70 -13 1 1508 278 202 11 102 chr9 121101384 121101472 -2974700 + RSINE1 SINE B4 12 91 -74 1 1508 721 231 11 86 chr9 121102434 121102609 -2973563 + RSINE1 SINE B4 2 163 -2 1 1508 675 257 54 11 chr9 121102761 121102946 -2973226 + B4 SINE B4 3 195 -97 1 1508 489 17 0 0 chr9 121102953 121103011 -2973161 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1508 291 71 0 0 chr9 121103053 121103095 -2973077 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1508 3219 48 10 5 chr9 121103569 121103963 -2972209 + MTA_Mm LTR MaLR 1 396 0 1 1508 1069 256 32 101 chr9 121104105 121104482 -2971690 + MTEa LTR MaLR 1 334 -25 1 1508 180 0 0 0 chr9 121104482 121104502 -2971670 + (CACAG)n Simple_repeat Simple_repeat 1 20 0 1 1508 360 0 0 0 chr9 121105308 121105348 -2970824 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1508 356 0 23 0 chr9 121106237 121106281 -2969891 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1508 241 206 48 0 chr9 121106284 121106347 -2969825 - RMER17C LTR ERVK -139 271 206 1 1508 493 274 124 27 chr9 121106389 121106648 -2969524 + L1M2 LINE L1 4395 4678 -1465 1 1508 382 264 0 120 chr9 121106781 121106906 -2969266 + B1F1 SINE Alu 40 149 0 1 1508 516 223 172 124 chr9 121107190 121107359 -2968813 + B3A SINE B2 13 198 0 1 1508 666 209 75 0 chr9 121108133 121108267 -2967905 + RSINE1 SINE B4 3 146 -19 1 1508 6307 57 30 51 chr9 121108284 121108978 -2967194 + L1VL2 LINE L1 203 905 -5513 2 1508 1232 49 0 0 chr9 121108978 121109120 -2967052 + B1_Mus1 SINE Alu 1 142 -6 2 1508 7885 62 7 16 chr9 121109120 121110377 -2965795 + L1VL2 LINE L1 906 2112 -1586 2 188 1890 252 31 78 chr9 121110478 121111221 -2964951 - L1_Rod LINE L1 -1222 4625 3904 2 1509 1197 75 0 0 chr9 121111221 121111368 -2964804 + B1_Mus1 SINE Alu 2 148 0 2 1509 1890 252 31 78 chr9 121111368 121111493 -2964679 - L1_Rod LINE L1 -1944 3903 3798 2 1509 219 203 0 0 chr9 121111493 121111557 -2964615 + A-rich Low_complexity Low_complexity 1 64 0 2 1509 295 250 11 54 chr9 121111983 121112076 -2964096 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 2 1509 2134 155 62 3 chr9 121112956 121113312 -2962860 + ORR1C1 LTR MaLR 1 377 -1 2 1509 180 111 0 0 chr9 121113929 121113956 -2962216 + (GAA)n Simple_repeat Simple_repeat 2 28 0 2 1509 238 374 58 53 chr9 121115188 121115377 -2960795 - B4A SINE B4 -13 279 90 2 1509 1179 58 0 0 chr9 121116003 121116141 -2960031 + B1_Mm SINE Alu 1 138 -9 2 1509 1451 93 0 5 chr9 121116926 121117121 -2959051 + B2_Mm2 SINE B2 1 194 -1 2 1509 247 246 40 14 chr9 121117592 121117666 -2958506 - RSINE1 SINE B4 -69 96 21 2 1509 438 185 32 11 chr9 121117656 121117749 -2958423 - RSINE1 SINE B4 -69 96 2 2 1509 678 278 166 13 chr9 121118187 121118909 -2957263 + L1MDa LINE L1 2017 2852 -3685 2 1509 547 201 13 0 chr9 121118953 121119107 -2957065 + (TA)n Simple_repeat Simple_repeat 2 157 0 2 1509 342 277 32 56 chr9 121119130 121119218 -2956954 + L1MDa LINE L1 2823 2912 -3625 2 1509 1027 142 0 13 chr9 121119218 121119357 -2956815 + B1_Mur3 SINE Alu 1 139 -10 2 1509 372 43 0 0 chr9 121119357 121119403 -2956769 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2 1509 342 277 32 56 chr9 121119413 121119450 -2956722 + L1MDa LINE L1 2913 2945 -3592 2 1509 285 240 13 39 chr9 121120095 121120173 -2955999 + PB1D10 SINE Alu 32 107 -10 2 1509 321 275 12 0 chr9 121120180 121120260 -2955912 + ID4 SINE ID 2 82 -1 2 1509 482 253 30 37 chr9 121120294 121120458 -2955714 + L1MDa LINE L1 6009 6171 -462 2 1509 208 37 0 137 chr9 121120568 121120663 -2955509 + (CTGGGG)n Simple_repeat Simple_repeat 4 85 0 2 1509 1592 53 0 0 chr9 121121176 121121365 -2954807 + B2_Mm1a SINE B2 1 189 -4 2 1509 372 43 0 0 chr9 121121440 121121486 -2954686 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1509 962 196 18 77 chr9 121121499 121121720 -2954452 + B3 SINE B2 1 208 -8 2 1509 258 32 0 0 chr9 121122236 121122267 -2953905 + (TCTG)n Simple_repeat Simple_repeat 1 31 0 2 1509 210 143 0 0 chr9 121122532 121122567 -2953605 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1509 1034 189 38 19 chr9 121123732 121123942 -2952230 + B3 SINE B2 3 216 0 2 1509 451 227 235 0 chr9 121125599 121125731 -2950441 + RSINE1 SINE B4 3 165 0 2 1509 297 183 0 0 chr9 121125747 121125807 -2950365 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1509 699 269 13 0 chr9 121126432 121126581 -2949591 - RSINE1 SINE B4 -13 152 2 2 1509 1541 289 115 80 chr9 121127374 121128190 -2947982 + Lx8 LINE L1 6316 7160 -313 2 1509 26 64 0 0 chr9 121128684 121128731 -2947441 + AT_rich Low_complexity Low_complexity 1 47 0 2 1509 601 321 16 0 chr9 121128880 121129073 -2947099 + B3A SINE B2 2 197 -1 2 1509 24 32 0 0 chr9 121129102 121129133 -2947039 + AT_rich Low_complexity Low_complexity 1 31 0 2 1509 402 275 10 48 chr9 121129139 121129433 -2946739 + GA-rich Low_complexity Low_complexity 1 283 0 2 1509 396 271 11 52 chr9 121129476 121131121 -2945051 + GA-rich Low_complexity Low_complexity 1 1578 0 2 1509 320 299 5 38 chr9 121131172 121131356 -2944816 + GA-rich Low_complexity Low_complexity 3 180 0 2 1509 378 286 5 43 chr9 121131598 121131784 -2944388 + GA-rich Low_complexity Low_complexity 2 180 0 2 1509 300 299 17 39 chr9 121131798 121131979 -2944193 + GA-rich Low_complexity Low_complexity 2 178 0 2 1509 370 269 11 53 chr9 121132146 121132495 -2943677 + GA-rich Low_complexity Low_complexity 1 334 0 2 1509 382 284 13 39 chr9 121132507 121132964 -2943208 + GA-rich Low_complexity Low_complexity 1 445 0 2 1509 315 281 11 48 chr9 121132983 121133170 -2943002 + GA-rich Low_complexity Low_complexity 1 180 0 2 1509 382 300 12 36 chr9 121133189 121134062 -2942110 + GA-rich Low_complexity Low_complexity 1 852 0 2 1509 334 301 17 22 chr9 121134097 121134336 -2941836 + GA-rich Low_complexity Low_complexity 1 237 0 2 1509 384 252 25 34 chr9 121134363 121134627 -2941545 + GA-rich Low_complexity Low_complexity 1 261 0 2 1509 408 279 15 39 chr9 121134647 121135700 -2940472 + GA-rich Low_complexity Low_complexity 1 1028 0 2 1509 341 298 5 43 chr9 121135719 121135905 -2940267 + GA-rich Low_complexity Low_complexity 1 179 0 2 1509 411 204 34 57 chr9 121135957 121136134 -2940038 + GA-rich Low_complexity Low_complexity 6 178 0 2 1509 375 265 17 46 chr9 121136146 121136650 -2939522 + GA-rich Low_complexity Low_complexity 1 489 0 2 1509 384 270 15 41 chr9 121136678 121137254 -2938918 + GA-rich Low_complexity Low_complexity 1 560 0 2 1509 226 350 0 48 chr9 121137160 121137346 -2938826 + G-rich Low_complexity Low_complexity 4 180 0 2 1509 403 271 15 40 chr9 121137307 121138592 -2937580 + GA-rich Low_complexity Low_complexity 1 1252 0 2 1509 361 282 11 43 chr9 121138724 121138909 -2937263 + GA-rich Low_complexity Low_complexity 2 180 0 2 1509 393 290 17 22 chr9 121139003 121139183 -2936989 + GA-rich Low_complexity Low_complexity 1 179 0 2 1509 447 274 11 47 chr9 121139211 121140312 -2935860 + GA-rich Low_complexity Low_complexity 1 1061 0 2 1509 408 275 5 43 chr9 121140356 121140542 -2935630 + GA-rich Low_complexity Low_complexity 1 179 0 2 1509 360 285 11 44 chr9 121140609 121141107 -2935065 + GA-rich Low_complexity Low_complexity 1 481 0 2 1509 411 204 34 57 chr9 121141159 121141336 -2934836 + GA-rich Low_complexity Low_complexity 6 178 0 2 1509 396 278 14 36 chr9 121141387 121142255 -2933917 + GA-rich Low_complexity Low_complexity 1 848 0 2 1509 217 244 47 16 chr9 121142236 121142365 -2933807 + (CAG)n Simple_repeat Simple_repeat 1 133 0 2 1509 396 282 11 38 chr9 121142375 121143351 -2932821 + GA-rich Low_complexity Low_complexity 1 950 0 2 1509 376 256 11 61 chr9 121143363 121143744 -2932428 + GA-rich Low_complexity Low_complexity 1 361 0 2 1509 374 269 13 50 chr9 121143823 121144439 -2931733 + GA-rich Low_complexity Low_complexity 1 593 0 2 1509 381 288 16 40 chr9 121144494 121145153 -2931019 + GA-rich Low_complexity Low_complexity 1 643 0 2 1509 384 267 14 46 chr9 121145179 121145574 -2930598 + GA-rich Low_complexity Low_complexity 1 382 0 2 1509 408 295 12 36 chr9 121145591 121146526 -2929646 + GA-rich Low_complexity Low_complexity 1 912 0 2 1509 294 286 13 41 chr9 121146545 121146977 -2929195 + GA-rich Low_complexity Low_complexity 1 419 0 2 1509 397 249 17 55 chr9 121146988 121147718 -2928454 + GA-rich Low_complexity Low_complexity 1 701 0 2 1509 383 274 8 48 chr9 121147744 121148104 -2928068 + GA-rich Low_complexity Low_complexity 1 345 0 2 1509 356 278 5 54 chr9 121148104 121148360 -2927812 + GA-rich Low_complexity Low_complexity 1 243 0 2 1509 369 296 6 39 chr9 121148372 121148709 -2927463 + GA-rich Low_complexity Low_complexity 1 325 0 2 1509 1257 48 0 0 chr9 121149305 121149452 -2926720 + B1_Mus2 SINE Alu 1 147 0 2 1509 276 102 0 0 chr9 121149455 121149504 -2926668 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1509 779 173 23 0 chr9 121149684 121149817 -2926355 + B1_Mur1 SINE Alu 1 136 -13 2 1509 333 0 0 0 chr9 121149842 121149879 -2926293 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1509 704 337 45 28 chr9 121150260 121150408 -2925764 + B4A SINE B4 1 147 -145 2 1509 2192 149 64 8 chr9 121150408 121150781 -2925391 - ORR1B1 LTR MaLR 0 394 1 2 1509 704 337 45 28 chr9 121150781 121150919 -2925253 + B4A SINE B4 148 292 0 2 1509 904 174 116 9 chr9 121151452 121151667 -2924505 + 7SK RNA RNA 2 239 -92 2 1509 392 320 66 31 chr9 121151984 121152210 -2923962 - L1MC LINE L1 -720 5624 5391 2 1509 1702 26 0 0 chr9 121152224 121152416 -2923756 + B2_Mm1a SINE B2 2 193 0 2 1509 549 321 102 0 chr9 121152546 121152761 -2923411 + MT2A LTR ERVL 2 238 -295 2 1509 414 162 50 15 chr9 121152923 121153029 -2923143 - B1_Mur1 SINE Alu 0 149 2 2 1509 952 196 6 0 chr9 121153646 121153809 -2922363 + RSINE1 SINE B4 2 165 0 2 1509 769 204 160 11 chr9 121153972 121154160 -2922012 - B3 SINE B2 0 216 1 2 1509 374 287 54 27 chr9 121154678 121154789 -2921383 - PB1D10 SINE Alu -3 114 1 2 1509 1529 177 119 0 chr9 121155184 121155511 -2920661 + ORR1D1 LTR MaLR 8 373 -1 2 1509 262 318 11 23 chr9 121155559 121155646 -2920526 + B4A SINE B4 57 142 -150 2 1509 326 355 6 0 chr9 121155777 121155943 -2920229 + (CATGC)n Simple_repeat Simple_repeat 1 167 0 2 1509 413 255 59 0 chr9 121156106 121156208 -2919964 + PB1D10 SINE Alu 5 112 -5 2 1509 209 171 0 0 chr9 121157457 121157492 -2918680 + C-rich Low_complexity Low_complexity 1 35 0 2 1509 230 290 129 10 chr9 121157560 121157661 -2918511 - MIR SINE MIR -62 146 34 2 1509 1418 89 21 5 chr9 121158280 121158471 -2917701 + B2_Mm2 SINE B2 1 194 -1 2 1509 805 204 10 88 chr9 121158492 121158696 -2917476 + B3A SINE B2 6 193 -5 2 1509 1261 41 0 0 chr9 121158703 121158850 -2917322 + B1_Mus2 SINE Alu 1 147 0 2 1509 493 267 27 14 chr9 121159435 121159583 -2916589 + ID_B1 SINE B4 73 222 -2 2 1509 301 191 63 0 chr9 121159586 121159649 -2916523 + ID4 SINE ID 2 68 -15 2 1509 1068 100 0 0 chr9 121159660 121159820 -2916352 + (CA)n Simple_repeat Simple_repeat 1 160 0 2 1509 369 321 100 12 chr9 121160477 121160647 -2915525 + B4 SINE B4 103 287 -5 2 1509 380 224 79 61 chr9 121161963 121162077 -2914095 + PB1D10 SINE Alu 2 117 0 2 1509 1170 91 90 6 chr9 121163478 121163644 -2912528 + B2_Mm2 SINE B2 1 180 -15 2 1509 1208 48 7 0 chr9 121163674 121163820 -2912352 - B1_Mm SINE Alu 0 147 1 2 1509 234 91 0 0 chr9 121163851 121163884 -2912288 + (GGA)n Simple_repeat Simple_repeat 3 35 0 2 1509 564 287 76 23 chr9 121164972 121165236 -2910936 + L1MB8 LINE L1 5887 6164 -14 2 1509 226 339 171 39 chr9 121167322 121167415 -2908757 - MLT1I LTR MaLR -85 326 226 2 1509 477 0 0 0 chr9 121167415 121167468 -2908704 + (TTCCC)n Simple_repeat Simple_repeat 3 55 0 2 1509 226 339 171 39 chr9 121167468 121167632 -2908540 - MLT1I LTR MaLR -186 225 36 2 1509 789 288 66 30 chr9 121168162 121168495 -2907677 + ORR1E LTR MaLR 4 348 -11 2 1509 489 138 0 0 chr9 121168964 121169058 -2907114 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 1509 3924 7 0 0 chr9 121169849 121170300 -2905872 - L1Md_A LINE L1 0 6582 6132 2 1509 1076 147 21 0 chr9 121170308 121170499 -2905673 - RMER6A LTR ERVK -11 745 551 2 1509 1538 106 40 43 chr9 121170503 121170780 -2905392 - RMER6A LTR ERVK -425 331 56 2 1509 384 77 0 0 chr9 121170780 121170832 -2905340 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1509 555 222 64 19 chr9 121171900 121172056 -2904116 + RSINE1 SINE B4 3 165 0 2 1509 961 232 49 26 chr9 121172120 121172386 -2903786 - B4A SINE B4 -19 273 2 2 1509 245 343 48 29 chr9 121173927 121174032 -2902140 - MER58A DNA MER1_type -72 152 46 2 1509 273 284 134 121 chr9 121174131 121174255 -2901917 + MER58B DNA MER1_type 10 121 -220 2 1509 450 198 180 16 chr9 121174255 121174383 -2901789 - B1F SINE Alu 0 149 1 2 1509 273 284 134 121 chr9 121174383 121174482 -2901690 + MER58B DNA MER1_type 122 236 -105 2 1509 474 65 0 0 chr9 121174787 121174849 -2901323 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1509 22 0 0 0 chr9 121175241 121175263 -2900909 + AT_rich Low_complexity Low_complexity 1 22 0 2 1509 246 383 32 32 chr9 121175995 121176119 -2900053 - Tigger5 DNA MER2_type -16 2390 2267 2 1509 1705 133 103 61 chr9 121176478 121177221 -2898951 + RMER17B LTR ERVK 1 794 -15 2 1509 289 289 152 22 chr9 121181472 121181610 -2894562 - RSINE1 SINE B4 -6 159 4 2 1509 255 254 17 0 chr9 121181802 121181861 -2894311 - ID4_ SINE ID 0 83 24 2 1509 1166 199 0 0 chr9 121182322 121182538 -2893634 - B3 SINE B2 0 216 1 2 1509 1968 136 124 3 chr9 121182583 121182930 -2893242 - MTC LTR MaLR 0 421 33 2 1509 564 53 0 0 chr9 121183353 121183429 -2892743 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1509 273 206 9 18 chr9 121183464 121183573 -2892599 + GA-rich Low_complexity Low_complexity 2 109 0 2 1509 447 221 111 7 chr9 121183575 121183725 -2892447 + L1MA4A LINE L1 3650 3846 -2300 2 1509 365 206 11 32 chr9 121183725 121183820 -2892352 + B2_Mm2 SINE B2 2 94 -101 2 1509 357 162 230 0 chr9 121183813 121183887 -2892285 - MTC LTR MaLR -330 91 1 3 1509 369 281 161 62 chr9 121183891 121184174 -2891998 + L1MA4A LINE L1 4895 5229 -651 2 1509 270 0 0 0 chr9 121184174 121184204 -2891968 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1509 389 267 173 30 chr9 121184204 121184458 -2891714 + L1MA4A LINE L1 5197 5532 -351 2 1509 311 299 58 77 chr9 121184492 121184619 -2891553 + B4A SINE B4 94 215 -77 3 1509 216 0 0 0 chr9 121184619 121184643 -2891529 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 3 1509 311 299 58 77 chr9 121184643 121184671 -2891501 + B4A SINE B4 216 246 -46 3 1509 474 18 0 0 chr9 121184679 121184734 -2891438 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 3 1509 366 107 0 0 chr9 121184908 121184964 -2891208 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1509 273 322 24 48 chr9 121185023 121185147 -2891025 + L1MA4A LINE L1 5802 5922 -381 2 1509 635 291 93 12 chr9 121185537 121185794 -2890378 + B4A SINE B4 1 278 -14 3 1509 908 192 47 0 chr9 121185877 121186049 -2890123 + B3A SINE B2 8 187 -11 3 1509 24 0 0 0 chr9 121186050 121186074 -2890098 + AT_rich Low_complexity Low_complexity 1 24 0 3 1509 268 182 59 29 chr9 121187152 121187220 -2888952 - PB1D7 SINE Alu -3 117 48 3 1509 1208 27 0 0 chr9 121187368 121187515 -2888657 - B1_Mus1 SINE Alu 0 148 2 3 1509 321 279 80 20 chr9 121187533 121187683 -2888489 - RMER15 LTR ERVL -70 505 347 3 1509 924 302 14 21 chr9 121187952 121188236 -2887936 - B4 SINE B4 0 292 11 3 1509 270 294 81 146 chr9 121188363 121188610 -2887562 + ORR1E LTR MaLR 12 242 -117 3 1509 522 0 0 0 chr9 121188681 121188739 -2887433 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1509 719 170 96 25 chr9 121188740 121188897 -2887275 - B2_Mm2 SINE B2 -26 169 2 3 1509 1128 56 0 0 chr9 121188926 121189070 -2887102 + B1_Mm SINE Alu 2 145 -2 3 1509 269 26 26 0 chr9 121189070 121189108 -2887064 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1509 26 30 0 0 chr9 121189460 121189493 -2886679 + AT_rich Low_complexity Low_complexity 1 33 0 3 1509 381 43 0 0 chr9 121190195 121190242 -2885930 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 1509 279 311 0 0 chr9 121190283 121190357 -2885815 + ID4 SINE ID 5 78 -5 3 1509 675 242 13 0 chr9 121190874 121191027 -2885145 - B3 SINE B2 -60 156 2 3 1509 315 0 0 0 chr9 121191489 121191524 -2884648 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1509 706 211 64 0 chr9 121191528 121191684 -2884488 - B3A SINE B2 -32 166 1 3 1509 501 315 98 7 chr9 121191844 121192139 -2884033 + ORR1E LTR MaLR 23 365 -14 3 1509 22 35 0 0 chr9 121192301 121192330 -2883842 + AT_rich Low_complexity Low_complexity 1 29 0 3 1509 478 110 0 0 chr9 121192383 121192465 -2883707 - L1Md_F2 LINE L1 0 6582 6501 3 1509 249 109 0 0 chr9 121192471 121192517 -2883655 + (T)n Simple_repeat Simple_repeat 1 46 0 3 1509 1161 41 0 20 chr9 121192519 121192669 -2883503 - B1_Mus1 SINE Alu -1 147 1 3 1509 23 0 0 0 chr9 121192670 121192693 -2883479 + AT_rich Low_complexity Low_complexity 1 23 0 3 1509 1891 249 34 75 chr9 121192710 121192852 -2883320 - RMER19C LTR ERVK 0 611 476 3 1509 753 146 63 63 chr9 121192852 121193042 -2883130 - B2_Mm2 SINE B2 -5 190 1 3 1509 1891 249 34 75 chr9 121193042 121193525 -2882647 - RMER19C LTR ERVK -136 475 12 3 1509 21 36 0 0 chr9 121193583 121193611 -2882561 + AT_rich Low_complexity Low_complexity 1 28 0 3 1509 690 243 0 0 chr9 121193638 121193786 -2882386 + B3 SINE B2 2 149 -67 3 1509 518 226 28 0 chr9 121193866 121193972 -2882200 - ID_B1 SINE B4 -1 223 115 3 1509 2616 66 23 0 chr9 121194066 121194458 -2881714 + MusHAL1 LINE L1 1680 2080 -632 3 1509 336 24 0 0 chr9 121194513 121194554 -2881618 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1509 576 187 0 18 chr9 121194556 121194665 -2881507 - RSINE1 SINE B4 -48 117 11 3 1509 387 119 30 0 chr9 121194667 121194734 -2881438 - B1F2 SINE Alu -59 90 22 3 1509 227 307 21 93 chr9 121195469 121195488 -2880684 + YREP_Mm Unknown Unknown 165 294 -1518 3 1509 633 155 8 41 chr9 121195488 121195609 -2880563 - ID_B1 SINE B4 -4 220 104 3 1509 258 159 0 42 chr9 121195632 121195702 -2880470 - B1F SINE Alu -1 148 87 3 1509 3196 35 8 0 chr9 121196091 121196488 -2879684 + MTB LTR MaLR 1 400 0 3 1509 680 188 28 48 chr9 121196622 121196767 -2879405 - B1_Mur2 SINE Alu -5 144 3 3 1509 943 226 24 9 chr9 121196798 121197008 -2879164 + B3 SINE B2 1 213 -3 3 1509 204 125 0 0 chr9 121197138 121197170 -2879002 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 3 1509 725 233 111 5 chr9 121197174 121197364 -2878808 - ID_B1 SINE B4 -14 210 1 3 1509 374 0 22 0 chr9 121197899 121197945 -2878227 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1509 198 0 0 0 chr9 121198064 121198086 -2878086 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1509 330 295 49 8 chr9 121198207 121198330 -2877842 - RMER15 LTR ERVL -72 503 376 3 1509 385 206 67 0 chr9 121198957 121199122 -2877050 + (CAAGA)n Simple_repeat Simple_repeat 2 177 0 3 1509 421 261 48 27 chr9 121199184 121199330 -2876842 - RMER15 LTR ERVL -154 421 273 3 1509 200 100 25 0 chr9 121199365 121199405 -2876767 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1509 1133 48 7 7 chr9 121199411 121199559 -2876613 + B1_Mus1 SINE Alu 1 148 0 3 1509 954 187 59 0 chr9 121199579 121199782 -2876390 - B3 SINE B2 0 216 2 3 1509 215 209 0 23 chr9 121199802 121199846 -2876326 + (TCTG)n Simple_repeat Simple_repeat 1 43 0 3 1509 509 194 15 0 chr9 121199847 121199981 -2876191 + (TATG)n Simple_repeat Simple_repeat 2 137 0 3 1509 553 222 0 37 chr9 121200022 121200209 -2875963 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 1509 251 194 30 0 chr9 121200267 121200334 -2875838 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 3 1509 451 315 27 7 chr9 121200425 121200572 -2875600 - RSINE1 SINE B4 0 165 16 3 1509 365 43 0 0 chr9 121200578 121200625 -2875547 - ORR1A3 LTR MaLR -8 338 292 3 1509 198 0 0 0 chr9 121200625 121200647 -2875525 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1509 255 82 20 0 chr9 121200647 121200696 -2875476 - B1_Mus2 SINE Alu 0 147 98 3 1509 1359 82 161 47 chr9 121200696 121200786 -2875386 - ORR1A3 LTR MaLR -42 284 203 3 1509 1440 74 0 0 chr9 121200786 121200975 -2875197 - B2_Mm1t SINE B2 -3 190 2 3 1509 1359 82 161 47 chr9 121200975 121201139 -2875033 - ORR1A3 LTR MaLR -124 202 1 3 1509 202 283 67 0 chr9 121201518 121201578 -2874594 - L2a LINE L2 -35 3391 3328 3 1509 287 282 69 46 chr9 121201753 121201883 -2874289 + LTR16E2 LTR ERVL 436 568 0 3 1509 207 0 0 0 chr9 121201969 121201992 -2874180 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1509 585 197 42 8 chr9 121202045 121202163 -2874009 - B1_Mur1 SINE Alu -5 144 23 3 1509 401 252 103 41 chr9 121202163 121202189 -2873983 - ID_B1 SINE B4 -4 219 67 3 1509 519 224 89 71 chr9 121202613 121202781 -2873391 + RMER30 DNA MER1_type 7 177 -25 3 1509 1752 279 14 6 chr9 121203038 121203528 -2872644 - Lx7 LINE L1 -394 7302 6809 3 1509 350 265 82 0 chr9 121203994 121204092 -2872080 + PB1D10 SINE Alu 12 117 0 3 1509 480 315 26 52 chr9 121204119 121204310 -2871862 + B4A SINE B4 2 187 -105 3 1509 744 262 64 24 chr9 121204313 121204563 -2871609 + Lx8 LINE L1 6958 7217 -256 3 1509 390 270 149 6 chr9 121204576 121204751 -2871421 + Lx8 LINE L1 7264 7463 -10 3 1509 271 208 57 0 chr9 121204756 121204809 -2871363 + B4A SINE B4 216 271 -21 3 1509 786 168 0 0 chr9 121204869 121205113 -2871059 + (CA)n Simple_repeat Simple_repeat 1 244 0 3 1509 1329 68 0 0 chr9 121205203 121205379 -2870793 + B2_Mm2 SINE B2 1 176 -19 3 1509 585 90 0 0 chr9 121205379 121205468 -2870704 + (GAGAA)n Simple_repeat Simple_repeat 2 90 0 3 1509 277 236 19 19 chr9 121206548 121206656 -2869516 + (CGGGG)n Simple_repeat Simple_repeat 5 112 0 3 1509 311 232 30 10 chr9 121206679 121206779 -2869393 + C-rich Low_complexity Low_complexity 3 104 0 3 1509 27 29 0 0 chr9 121206909 121206943 -2869229 + GC_rich Low_complexity Low_complexity 1 34 0 3 1509 234 0 0 0 chr9 121209790 121209816 -2866356 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1509 638 206 7 99 chr9 121209816 121209967 -2866205 - ID_B1 SINE B4 0 224 88 3 1509 347 231 70 39 chr9 121209964 121210102 -2866070 - PB1 SINE Alu -24 125 2 3 1509 842 231 75 16 chr9 121210190 121210445 -2865727 + ORR1D2 LTR MaLR 15 284 -86 3 1509 227 218 0 35 chr9 121210751 121210808 -2865364 + CT-rich Low_complexity Low_complexity 2 56 0 3 1509 781 306 29 33 chr9 121210817 121211128 -2865044 + B4 SINE B4 2 292 0 3 1509 1201 34 0 0 chr9 121211561 121211708 -2864464 - B1_Mus2 SINE Alu 0 147 1 3 1509 493 239 45 149 chr9 121211792 121211943 -2864229 - B3A SINE B2 0 198 55 3 1509 513 0 0 0 chr9 121211943 121212000 -2864172 + (TCC)n Simple_repeat Simple_repeat 2 58 0 3 1509 1139 81 0 0 chr9 121212007 121212155 -2864017 - B1_Mus1 SINE Alu 0 148 1 3 1509 493 239 45 149 chr9 121212155 121212216 -2863956 - B3A SINE B2 -144 54 1 3 1509 273 119 0 0 chr9 121212738 121212780 -2863392 + (CCA)n Simple_repeat Simple_repeat 2 43 0 3 1509 222 243 0 36 chr9 121213280 121213391 -2862781 + (CATATA)n Simple_repeat Simple_repeat 1 107 0 3 1509 776 197 114 5 chr9 121213441 121213625 -2862547 - ID_B1 SINE B4 -19 205 2 3 1509 782 276 112 52 chr9 121214024 121214391 -2861781 - L1MB3 LINE L1 -14 6169 5770 3 1509 1119 62 7 0 chr9 121214391 121214536 -2861636 - B1_Mus2 SINE Alu 0 147 2 3 1509 782 276 112 52 chr9 121214536 121214687 -2861485 - L1MB3 LINE L1 -414 5769 5620 3 1509 252 0 0 0 chr9 121215342 121215370 -2860802 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 3 1509 311 263 26 0 chr9 121215382 121215458 -2860714 - B1F2 SINE Alu -70 79 2 3 1509 243 88 0 0 chr9 121215640 121215674 -2860498 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 3 1509 2320 186 80 36 chr9 121215730 121216281 -2859891 + RMER15 LTR ERVL 1 575 0 3 1509 1626 16 0 20 chr9 121216819 121217016 -2859156 + B2_Mm1a SINE B2 1 193 0 3 1509 1223 34 0 0 chr9 121217023 121217170 -2859002 + B1_Mus2 SINE Alu 1 147 0 4 1509 1684 201 86 3 chr9 121217220 121217594 -2858578 + MTD LTR MaLR 1 405 -14 4 1509 293 193 11 40 chr9 121217578 121217664 -2858508 + B1F SINE Alu 37 120 0 4 1509 306 290 42 16 chr9 121217758 121217886 -2858286 - B4 SINE B4 -12 280 75 4 1509 1095 75 0 7 chr9 121218083 121218231 -2857941 + B1_Mus2 SINE Alu 1 147 0 4 1509 342 0 0 0 chr9 121219161 121219199 -2856973 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1509 302 284 181 0 chr9 121219203 121219330 -2856842 - RSINE1 SINE B4 -5 160 11 4 1509 827 227 15 20 chr9 121219347 121219545 -2856627 - ID_B1 SINE B4 0 224 28 4 1509 211 242 192 40 chr9 121219891 121219990 -2856182 + PB1D9 SINE Alu 5 118 -2 4 1509 356 308 101 37 chr9 121220069 121220258 -2855914 + L1ME2 LINE L1 5698 5898 -266 4 1509 786 204 12 30 chr9 121220436 121220603 -2855569 + RSINE1 SINE B4 2 165 0 4 1509 339 262 11 223 chr9 121220738 121220824 -2855348 + MER96B DNA hAT 31 88 -329 4 1509 239 258 0 29 chr9 121220824 121220892 -2855280 - ID4_ SINE ID -16 67 2 4 1509 339 262 11 223 chr9 121220892 121221065 -2855107 + MER96B DNA hAT 89 235 -182 4 1509 228 111 0 0 chr9 121222294 121222330 -2853842 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 4 1509 441 209 39 18 chr9 121222331 121222437 -2853735 - RSINE1 SINE B4 -180 112 10 4 1509 266 232 0 0 chr9 121222430 121222486 -2853686 - B4A SINE B4 -47 245 190 4 1509 1472 149 78 113 chr9 121222493 121222918 -2853254 - RMER17C LTR ERVK 0 410 1 4 1509 261 236 97 0 chr9 121222926 121222998 -2853174 - B4A SINE B4 -213 79 1 4 1509 255 342 7 40 chr9 121223564 121223716 -2852456 + CT-rich Low_complexity Low_complexity 4 150 0 4 1509 294 204 0 0 chr9 121224534 121224588 -2851584 + B3 SINE B2 2 55 -161 4 1509 486 171 16 39 chr9 121224592 121224774 -2851398 + (CA)n Simple_repeat Simple_repeat 2 179 0 4 1509 288 312 77 68 chr9 121225626 121225743 -2850429 + B1F SINE Alu 3 120 -29 4 1509 1215 233 158 14 chr9 121225755 121226121 -2850051 + MTD LTR MaLR 1 419 0 4 1509 798 205 55 41 chr9 121226400 121226619 -2849553 + ID_B1 SINE B4 1 222 -2 4 1509 180 97 0 0 chr9 121227177 121227208 -2848964 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 4 1509 354 284 3 0 chr9 121227209 121227303 -2848869 - B1_Mur4 SINE Alu -50 100 4 4 1509 1011 251 157 30 chr9 121227408 121227745 -2848427 + MTD LTR MaLR 1 380 -39 4 1509 34 24 0 0 chr9 121228275 121228316 -2847856 + AT_rich Low_complexity Low_complexity 1 41 0 4 1509 1270 59 29 0 chr9 121228343 121228513 -2847659 - B2_Mm1a SINE B2 -18 175 1 4 1509 654 185 100 133 chr9 121229325 121229383 -2846789 - B4 SINE B4 -19 273 177 4 1509 936 31 108 0 chr9 121229383 121229512 -2846660 - B1_Mus1 SINE Alu 0 148 6 4 1509 654 185 100 133 chr9 121229512 121229614 -2846558 - B4 SINE B4 -19 176 1 4 1509 325 270 90 0 chr9 121229917 121230028 -2846144 - B4 SINE B4 -3 289 169 4 1509 1040 143 0 33 chr9 121230078 121230111 -2846061 - B2_Mm2 SINE B2 -12 183 156 4 1509 216 0 0 0 chr9 121230111 121230135 -2846037 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 4 1509 1040 143 0 33 chr9 121230135 121230282 -2845890 - B2_Mm2 SINE B2 -40 155 9 4 1509 236 262 50 106 chr9 121230535 121230714 -2845458 + MT2B2 LTR ERVL 72 240 -344 4 1509 581 185 151 0 chr9 121230640 121230759 -2845413 + B1_Mur4 SINE Alu 13 149 -1 4 1509 234 0 0 0 chr9 121230825 121230851 -2845321 + (CAGTG)n Simple_repeat Simple_repeat 5 30 0 4 1509 3005 8 2 76 chr9 121231495 121231891 -2844281 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1509 14043 24 1 3 chr9 121231891 121233549 -2842623 - IAPEz-int LTR ERVK 0 6481 4827 4 1509 29918 30 24 10 chr9 121233535 121237205 -2838967 - IAPEz-int LTR ERVK -2752 3729 8 4 1509 3005 8 2 76 chr9 121237205 121237601 -2838571 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1509 269 318 35 23 chr9 121237919 121238006 -2838166 - B4A SINE B4 -4 288 201 4 1509 437 318 46 0 chr9 121238025 121238176 -2837996 - RSINE1 SINE B4 0 165 8 4 1509 354 260 110 31 chr9 121238241 121238368 -2837804 - B4A SINE B4 -140 152 16 4 1509 483 63 0 0 chr9 121239092 121239155 -2837017 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1509 489 254 102 61 chr9 121239231 121239428 -2836744 - B4 SINE B4 -82 210 6 4 1509 887 99 128 0 chr9 121239585 121239726 -2836446 - B2_Mm2 SINE B2 -36 159 1 4 1509 911 160 15 88 chr9 121240037 121240242 -2835930 - B3 SINE B2 0 216 27 4 1509 1070 108 0 0 chr9 121240273 121240421 -2835751 - B1_Mus1 SINE Alu 0 148 1 4 1509 559 214 0 9 chr9 121240432 121240545 -2835627 - PB1D9 SINE Alu -7 113 2 4 1509 264 300 18 91 chr9 121240557 121240667 -2835505 - PB1D10 SINE Alu -8 109 8 4 1509 275 281 226 15 chr9 121240682 121240956 -2835216 - L1M4 LINE L1 -1950 4196 3865 4 1509 372 71 0 0 chr9 121241051 121241107 -2835065 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1509 269 363 0 22 chr9 121241418 121241556 -2834616 + C-rich Low_complexity Low_complexity 4 138 0 4 188 333 0 0 0 chr9 121241597 121241634 -2834538 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1510 446 267 60 0 chr9 121241971 121242087 -2834085 - B1F1 SINE Alu -26 123 1 4 1510 1165 48 0 0 chr9 121242138 121242285 -2833887 - B1_Mus1 SINE Alu -1 147 1 4 1510 414 0 0 0 chr9 121242489 121242535 -2833637 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1510 385 257 148 7 chr9 121242899 121243048 -2833124 - B4A SINE B4 -79 213 44 4 1510 304 231 18 9 chr9 121244326 121244435 -2831737 + C-rich Low_complexity Low_complexity 6 115 0 4 1510 230 253 0 12 chr9 121244475 121244559 -2831613 + CT-rich Low_complexity Low_complexity 2 84 0 4 1510 252 86 0 0 chr9 121244593 121244628 -2831544 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1510 213 65 0 0 chr9 121244633 121244664 -2831508 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1510 339 25 0 0 chr9 121244666 121244706 -2831466 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1510 737 213 91 53 chr9 121245508 121245617 -2830555 + ID_B1 SINE B4 2 112 -112 4 1510 4593 156 37 27 chr9 121245617 121246516 -2829656 - RMER13B LTR ERVK 0 908 1 4 1510 737 213 91 53 chr9 121246516 121246614 -2829558 + ID_B1 SINE B4 113 217 -7 4 1510 194 179 51 0 chr9 121246659 121246698 -2829474 + MER5A DNA MER1_type 114 154 -35 4 1510 372 43 0 0 chr9 121246701 121246747 -2829425 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1510 360 59 0 0 chr9 121247187 121247238 -2828934 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1510 227 243 66 106 chr9 121247290 121247442 -2828730 - MIRb SINE MIR -24 244 102 4 1510 200 184 0 0 chr9 121247551 121247589 -2828583 + G-rich Low_complexity Low_complexity 3 40 0 4 1510 264 274 22 56 chr9 121247694 121247783 -2828389 + MLT1A1 LTR MaLR 318 403 -5 4 1510 713 284 134 0 chr9 121247908 121248162 -2828010 - B4 SINE B4 -4 288 1 4 1510 353 39 20 0 chr9 121248169 121248220 -2827952 + (TTTTTG)n Simple_repeat Simple_repeat 1 52 0 4 1510 1221 14 0 0 chr9 121248223 121248364 -2827808 - B1_Mm SINE Alu -6 141 1 4 1510 24 0 0 0 chr9 121248367 121248391 -2827781 + AT_rich Low_complexity Low_complexity 1 24 0 4 1510 231 36 0 0 chr9 121248687 121248715 -2827457 + (TCC)n Simple_repeat Simple_repeat 2 29 0 4 1510 615 14 0 0 chr9 121248760 121248832 -2827340 + (TCTCC)n Simple_repeat Simple_repeat 1 72 0 4 1510 253 286 140 19 chr9 121248987 121249118 -2827054 + RSINE1 SINE B4 3 146 -19 4 1510 233 300 43 22 chr9 121249218 121249310 -2826862 - L1MB1 LINE L1 -233 5935 5842 4 1510 252 0 0 0 chr9 121249311 121249339 -2826833 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1510 232 330 36 83 chr9 121249491 121249683 -2826489 - L1M4 LINE L1 -583 5595 5413 4 1510 268 102 229 14 chr9 121249750 121249820 -2826352 - PB1D7 SINE Alu -28 92 8 4 1510 227 238 0 0 chr9 121250013 121250055 -2826117 + (TCCG)n Simple_repeat Simple_repeat 4 45 0 4 1510 1017 105 7 0 chr9 121250066 121250209 -2825963 - B1_Mus1 SINE Alu -4 144 1 4 1510 1158 55 7 0 chr9 121250341 121250487 -2825685 + B1_Mm SINE Alu 1 147 0 4 1510 384 111 0 0 chr9 121250512 121250575 -2825597 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1510 223 214 0 51 chr9 121250646 121250705 -2825467 + C-rich Low_complexity Low_complexity 5 60 0 4 1510 267 286 48 0 chr9 121250707 121250791 -2825381 - B4 SINE B4 -60 232 145 4 1510 276 120 0 0 chr9 121251394 121251444 -2824728 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 4 1510 357 136 0 0 chr9 121252257 121252323 -2823849 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1510 604 218 172 6 chr9 121252351 121252508 -2823664 - B3A SINE B2 -15 183 1 4 1510 445 285 72 7 chr9 121252668 121252806 -2823366 - RSINE1 SINE B4 -16 149 3 4 1510 519 138 0 0 chr9 121253333 121253420 -2822752 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 1510 403 227 146 0 chr9 121253466 121253576 -2822596 + ID_B1 SINE B4 87 212 -12 4 1510 307 241 24 118 chr9 121253576 121253593 -2822579 + PB1D7 SINE Alu 6 120 0 4 1510 566 218 114 29 chr9 121253933 121254108 -2822064 - B3A SINE B2 0 198 9 4 1510 1157 55 0 0 chr9 121254124 121254269 -2821903 - B1_Mm SINE Alu -1 146 2 4 1510 428 221 43 26 chr9 121254468 121254584 -2821588 - L1MD3 LINE L1 -8 7987 7870 4 1510 238 200 0 68 chr9 121255066 121255109 -2821063 + (CCCA)n Simple_repeat Simple_repeat 4 45 0 4 1510 1337 189 45 176 chr9 121255109 121255592 -2820580 + MTC LTR MaLR 1 420 -1 4 1510 238 200 0 68 chr9 121255592 121255607 -2820565 + (CCCA)n Simple_repeat Simple_repeat 2 14 0 4 1510 198 143 0 0 chr9 121255625 121255660 -2820512 + (TCCA)n Simple_repeat Simple_repeat 2 36 0 4 1510 337 245 20 50 chr9 121256201 121256300 -2819872 + B4A SINE B4 18 113 -179 4 1510 583 191 0 37 chr9 121256737 121256846 -2819326 - PB1D10 SINE Alu -12 105 1 4 1510 389 236 0 41 chr9 121258661 121258758 -2817414 - RSINE1 SINE B4 -45 120 28 4 1510 635 162 287 0 chr9 121258859 121259026 -2817146 - B3 SINE B2 0 216 2 5 1510 1027 72 0 0 chr9 121259157 121259295 -2816877 - B1_Mus1 SINE Alu 0 148 11 5 1510 242 284 70 17 chr9 121259193 121259365 -2816807 - ORR1B1-int LTR MaLR -750 759 579 5 1510 611 196 6 57 chr9 121259295 121259312 -2816860 - ID_B1 SINE B4 0 222 76 5 1510 886 207 47 5 chr9 121259544 121259758 -2816414 - ID_B1 SINE B4 0 224 2 5 1510 270 0 0 0 chr9 121259995 121260025 -2816147 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1510 195 42 0 0 chr9 121260857 121260881 -2815291 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 5 1510 1236 288 68 21 chr9 121261798 121262312 -2813860 - Lx8 LINE L1 -121 7352 6815 5 1510 201 39 0 0 chr9 121262666 121262692 -2813480 + (TATG)n Simple_repeat Simple_repeat 1 26 0 5 1510 489 276 159 11 chr9 121262692 121262808 -2813364 - B3 SINE B2 -13 203 79 5 1510 2285 81 11 69 chr9 121262808 121263155 -2813017 - ORR1A2 LTR MaLR 0 327 1 5 1510 489 276 159 11 chr9 121263155 121263214 -2812958 - B3 SINE B2 -138 78 4 5 1510 619 205 0 0 chr9 121263864 121263981 -2812191 - RSINE1 SINE B4 -48 117 1 5 1510 311 65 22 0 chr9 121265475 121265521 -2810651 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1510 1114 84 7 0 chr9 121265521 121265676 -2810496 - B2_Mm2 SINE B2 -38 157 2 5 1510 697 267 69 29 chr9 121265768 121266042 -2810130 + B4 SINE B4 2 286 -6 5 1510 350 257 352 0 chr9 121266135 121266257 -2809915 + B4A SINE B4 46 210 -82 5 1510 384 250 0 0 chr9 121266293 121266377 -2809795 + PB1D10 SINE Alu 1 84 -33 5 1510 213 260 13 40 chr9 121266694 121266770 -2809402 - ID SINE ID -149 75 2 5 1510 266 311 54 22 chr9 121266768 121266860 -2809312 - PB1D10 SINE Alu -1 116 22 5 1510 260 122 41 0 chr9 121268028 121268077 -2808095 + G-rich Low_complexity Low_complexity 2 52 0 5 1510 408 200 0 0 chr9 121268124 121268219 -2807953 + (TA)n Simple_repeat Simple_repeat 1 95 0 5 1510 204 40 0 0 chr9 121268264 121268289 -2807883 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1510 1078 76 7 0 chr9 121269086 121269231 -2806941 + B1_Mus1 SINE Alu 3 148 0 5 1510 441 0 0 0 chr9 121269389 121269438 -2806734 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1510 692 214 86 6 chr9 121270807 121270981 -2805191 + B3 SINE B2 23 210 -6 5 1510 246 282 0 0 chr9 121271014 121271099 -2805073 + T-rich Low_complexity Low_complexity 1 85 0 5 1510 600 268 60 32 chr9 121271619 121271804 -2804368 - B3A SINE B2 0 198 9 5 1510 366 311 147 51 chr9 121271803 121271959 -2804213 - B3A SINE B2 -22 176 6 5 1510 480 302 99 42 chr9 121272017 121272280 -2803892 - B4A SINE B4 0 292 15 5 1510 426 39 0 0 chr9 121272335 121272387 -2803785 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1510 646 263 132 6 chr9 121273515 121273841 -2802331 - MTEa LTR MaLR -12 367 1 5 1510 343 196 0 32 chr9 121276647 121276742 -2799430 + CT-rich Low_complexity Low_complexity 2 93 0 5 1510 252 247 107 58 chr9 121276817 121276847 -2799325 - B1F2 SINE Alu 0 149 42 5 1510 292 264 0 14 chr9 121276847 121276920 -2799252 - ID_B1 SINE B4 -30 194 123 5 1510 907 248 53 25 chr9 121277518 121277799 -2798373 + B4A SINE B4 2 290 -2 5 1510 1666 42 0 0 chr9 121278214 121278407 -2797765 + B2_Mm1a SINE B2 1 193 0 5 1510 575 167 52 9 chr9 121278505 121278620 -2797552 - RSINE1 SINE B4 -43 122 3 5 1510 244 213 0 0 chr9 121279150 121279197 -2796975 - MIRc SINE MIR -118 150 104 5 1510 1039 151 171 5 chr9 121279606 121279799 -2796373 + URR1B DNA MER1_type 1 225 0 5 1510 202 323 78 68 chr9 121280181 121280284 -2795888 + MIRb SINE MIR 164 267 -1 5 1510 229 232 29 14 chr9 121280333 121280403 -2795769 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 5 1510 207 113 57 0 chr9 121280786 121280839 -2795333 + (CTGGGG)n Simple_repeat Simple_repeat 3 58 0 5 1510 180 0 0 0 chr9 121281647 121281667 -2794505 + (C)n Simple_repeat Simple_repeat 1 20 0 5 1510 448 89 12 12 chr9 121281778 121281858 -2794314 + (TCC)n Simple_repeat Simple_repeat 2 81 0 5 1510 210 143 0 0 chr9 121281970 121282005 -2794167 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1510 801 194 83 6 chr9 121282006 121282187 -2793985 + MTD LTR MaLR 15 209 -210 5 1510 533 218 0 9 chr9 121282196 121282307 -2793865 + B3 SINE B2 38 147 -69 5 1510 568 266 30 50 chr9 121282343 121282572 -2793600 + MTD LTR MaLR 196 398 -21 5 1510 368 149 45 0 chr9 121284137 121284204 -2791968 - ID SINE ID -146 78 9 5 1510 622 305 62 8 chr9 121284532 121284773 -2791399 + B4 SINE B4 35 288 -4 5 1510 591 74 0 0 chr9 121284838 121284919 -2791253 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1510 201 309 36 0 chr9 121285735 121285819 -2790353 + MIR SINE MIR 31 117 -145 5 1510 907 41 8 0 chr9 121285861 121285983 -2790189 + B1_Mus2 SINE Alu 25 147 0 5 1510 977 178 144 0 chr9 121286001 121286181 -2789991 + B3 SINE B2 2 207 -9 5 1510 285 145 0 0 chr9 121286416 121286478 -2789694 + (G)n Simple_repeat Simple_repeat 1 62 0 5 1510 222 208 89 25 chr9 121286851 121286930 -2789242 + PB1D9 SINE Alu 37 120 0 5 1510 409 371 0 59 chr9 121286891 121287060 -2789112 + ID_B1 SINE B4 37 195 -29 5 1510 1957 209 64 21 chr9 121287112 121287596 -2788576 - RLTR16 LTR ERVK 0 505 1 5 1510 193 191 71 0 chr9 121287869 121287953 -2788219 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 5 1510 277 170 0 0 chr9 121287973 121288020 -2788152 + B1_Mur4 SINE Alu 9 55 -95 5 1510 258 159 0 0 chr9 121288020 121288089 -2788083 + GA-rich Low_complexity Low_complexity 90 158 0 5 1510 486 144 102 10 chr9 121288091 121288189 -2787983 + B1F2 SINE Alu 42 148 -1 5 1510 234 267 165 72 chr9 121288590 121288687 -2787485 - PB1D10 SINE Alu -11 106 1 5 1510 563 254 147 20 chr9 121288879 121289076 -2787096 + ID_B1 SINE B4 2 223 -1 5 1510 255 31 0 0 chr9 121289085 121289117 -2787055 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 1510 371 262 0 0 chr9 121289285 121289369 -2786803 + MER21B LTR ERV1 509 592 -271 5 1510 432 268 139 14 chr9 121289403 121289458 -2786714 - RSINE1 SINE B4 0 165 110 5 1510 261 0 0 0 chr9 121289458 121289487 -2786685 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1510 432 268 139 14 chr9 121289487 121289575 -2786597 - RSINE1 SINE B4 -56 109 6 5 1510 207 0 0 0 chr9 121289755 121289778 -2786394 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1510 726 289 88 4 chr9 121289888 121290162 -2786010 + MER21B LTR ERV1 485 781 -82 5 1510 489 276 19 25 chr9 121290598 121290758 -2785414 - B4A SINE B4 -19 273 115 5 1510 274 200 41 41 chr9 121290934 121291007 -2785165 - B4 SINE B4 -204 88 16 5 1510 285 217 33 0 chr9 121290948 121291008 -2785164 - ID4_ SINE ID -7 76 15 5 1510 743 312 118 22 chr9 121291018 121291519 -2784653 - L1MB5 LINE L1 -70 6104 5556 5 1510 253 294 58 12 chr9 121293349 121293435 -2782737 + MER102b DNA MER1_type 32 121 -220 5 1510 451 285 24 8 chr9 121293437 121293561 -2782611 + RSINE1 SINE B4 2 127 -38 5 1510 231 114 0 0 chr9 121293568 121293603 -2782569 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1510 311 339 45 16 chr9 121294087 121294312 -2781860 - L1MB4 LINE L1 -217 5963 5726 5 1510 180 0 0 0 chr9 121295899 121295919 -2780253 + (TTAGGG)n Simple_repeat Simple_repeat 3 22 0 5 1510 1331 240 17 14 chr9 121296285 121296576 -2779596 - B4 SINE B4 0 292 1 5 1510 1222 55 0 0 chr9 121296620 121296766 -2779406 - B1_Mus2 SINE Alu 0 147 2 5 1510 468 51 0 0 chr9 121298254 121298313 -2777859 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 1510 1167 44 0 0 chr9 121298315 121298451 -2777721 - B1_Mm SINE Alu -11 136 1 5 1510 1242 286 25 22 chr9 121298714 121299078 -2777094 + MTEb LTR MaLR 15 379 0 5 1510 514 197 14 0 chr9 121299437 121299579 -2776593 + (TGGG)n Simple_repeat Simple_repeat 2 145 0 5 1510 679 159 6 6 chr9 121299599 121299770 -2776402 + (TGGA)n Simple_repeat Simple_repeat 4 174 0 5 1510 198 206 0 0 chr9 121299810 121299873 -2776299 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 5 1510 611 288 11 22 chr9 121300119 121300322 -2775850 - L1MA5 LINE L1 -14 6286 6092 5 1510 2251 171 55 8 chr9 121300322 121300724 -2775448 + MTC LTR MaLR 1 421 0 5 1510 472 325 19 59 chr9 121300724 121300796 -2775376 - L1MA5 LINE L1 -209 6091 6022 5 1510 537 143 44 0 chr9 121301455 121301546 -2774626 - B3 SINE B2 -121 95 1 5 1510 236 255 0 0 chr9 121301929 121301976 -2774196 - ID4_ SINE ID -2 81 35 5 1510 730 182 80 7 chr9 121302036 121302174 -2773998 - B1F1 SINE Alu 0 149 2 5 1510 261 288 27 0 chr9 121302182 121302255 -2773917 - BC1_Mm scRNA scRNA -61 91 17 5 1510 760 260 31 76 chr9 121302301 121302526 -2773646 + B3 SINE B2 1 215 -1 5 1510 1020 0 0 77 chr9 121302633 121302828 -2773344 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 5 1510 751 215 89 17 chr9 121303761 121303941 -2772231 + B3A SINE B2 1 193 -5 5 1510 252 360 17 17 chr9 121304063 121304179 -2771993 + Charlie4 DNA MER1_type 77 192 -1769 5 1510 687 195 0 25 chr9 121304463 121304584 -2771588 - PB1D9 SINE Alu -1 119 2 5 1510 438 114 0 0 chr9 121304617 121304687 -2771485 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 1510 451 207 78 35 chr9 121304741 121304856 -2771316 - PB1D9 SINE Alu 0 120 1 5 1510 328 314 25 8 chr9 121304940 121305062 -2771110 - B4A SINE B4 -167 125 2 5 1510 295 261 0 15 chr9 121306434 121306570 -2769602 + CT-rich Low_complexity Low_complexity 1 134 0 5 1510 301 204 105 19 chr9 121306612 121306717 -2769455 - B1F1 SINE Alu -35 114 1 5 1510 258 32 0 0 chr9 121306791 121306822 -2769350 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1510 267 208 0 0 chr9 121306849 121306897 -2769275 + CT-rich Low_complexity Low_complexity 1 48 0 6 1510 826 251 37 0 chr9 121308400 121308591 -2767581 - B4 SINE B4 -10 282 85 6 1510 849 202 12 24 chr9 121308599 121308766 -2767406 - B3 SINE B2 -9 207 43 6 1510 314 294 11 11 chr9 121308783 121308876 -2767296 - B4 SINE B4 -198 94 2 6 1510 431 229 67 0 chr9 121309368 121309473 -2766699 - RSINE1 SINE B4 -51 114 3 6 1510 325 207 54 60 chr9 121310290 121310428 -2765744 - L1M4b LINE L1 -5400 1934 1831 6 1510 794 281 87 0 chr9 121310486 121310728 -2765444 - B4A SINE B4 -4 288 26 6 1510 22 0 0 0 chr9 121311366 121311388 -2764784 + AT_rich Low_complexity Low_complexity 1 22 0 6 1510 322 307 30 38 chr9 121311525 121311657 -2764515 + MER20 DNA MER1_type 51 181 -38 6 1510 195 129 0 0 chr9 121311827 121311858 -2764314 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1510 198 0 0 0 chr9 121312978 121313000 -2763172 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1510 297 0 0 0 chr9 121313217 121313250 -2762922 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1510 352 328 15 44 chr9 121314779 121314916 -2761256 - RSINE1 SINE B4 -31 134 2 6 1510 2218 105 12 12 chr9 121315526 121315863 -2760309 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1510 53195 30 8 3 chr9 121315865 121322277 -2753895 - IAPEz-int LTR ERVK -2 6479 34 6 1510 2206 108 12 12 chr9 121322287 121322624 -2753548 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1510 627 168 16 40 chr9 121322725 121322849 -2753323 - ID_B1 SINE B4 0 224 104 6 1510 231 305 42 0 chr9 121323015 121323110 -2753062 + L1MC4 LINE L1 7919 8017 -25 6 1510 246 255 147 0 chr9 121323215 121323317 -2752855 - B1F SINE Alu 0 117 1 6 1510 207 0 0 0 chr9 121323358 121323381 -2752791 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1510 319 214 247 0 chr9 121323760 121323849 -2752323 - PB1D10 SINE Alu -3 114 4 6 1510 521 217 0 50 chr9 121325944 121326065 -2750107 - PB1D10 SINE Alu 0 117 3 6 1510 180 0 0 0 chr9 121326071 121326091 -2750081 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1510 304 299 0 0 chr9 121326908 121326985 -2749187 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 1510 365 286 31 53 chr9 121326985 121327210 -2748962 - RMER12 LTR ERVK -334 988 769 6 1510 411 271 0 0 chr9 121327210 121327460 -2748712 + (CA)n Simple_repeat Simple_repeat 1 250 0 6 1510 347 286 19 0 chr9 121327463 121327568 -2748604 + (CATA)n Simple_repeat Simple_repeat 2 108 0 6 1510 874 189 7 0 chr9 121327698 121327846 -2748326 - B1_Mur2 SINE Alu 0 149 1 6 1510 189 0 0 0 chr9 121327851 121327872 -2748300 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1510 1257 41 0 0 chr9 121327872 121328019 -2748153 - B1_Mus2 SINE Alu 0 147 1 6 1510 793 251 31 10 chr9 121328043 121328236 -2747936 - B3A SINE B2 0 198 2 6 1510 194 278 42 53 chr9 121328340 121328435 -2747737 + MER5A DNA MER1_type 40 133 -56 6 1510 317 340 98 15 chr9 121329303 121329506 -2746666 - RMER15 LTR ERVL -20 555 336 6 1510 207 0 0 0 chr9 121331371 121331394 -2744778 + (CCTG)n Simple_repeat Simple_repeat 1 23 0 6 1510 414 0 0 0 chr9 121331940 121331986 -2744186 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1510 774 267 155 4 chr9 121332010 121332262 -2743910 - B4A SINE B4 -1 291 2 6 1510 565 322 91 4 chr9 121333171 121333445 -2742727 - L1MB7 LINE L1 -251 5933 5636 6 1510 193 204 0 39 chr9 121333455 121333506 -2742666 + MIRc SINE MIR 84 132 -136 6 1510 188 327 46 18 chr9 121333694 121333803 -2742369 - L2b LINE L2 -253 3122 3011 6 1510 725 237 6 13 chr9 121334292 121334450 -2741722 - RSINE1 SINE B4 -4 161 5 6 1510 779 179 21 0 chr9 121334555 121334695 -2741477 - B1_Mus1 SINE Alu 0 148 6 6 1510 206 315 64 18 chr9 121335885 121335995 -2740177 + L2 LINE L2 2778 2892 -527 6 1510 282 125 0 20 chr9 121335997 121336046 -2740126 - B1_Mur1 SINE Alu -7 142 95 6 1510 4698 63 5 7 chr9 121337724 121338316 -2737856 - L1_Mus3 LINE L1 -1 6637 6047 6 1510 1229 68 0 0 chr9 121338334 121338481 -2737691 - B1_Mm SINE Alu 0 147 1 6 1510 210 191 0 0 chr9 121338582 121338624 -2737548 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1510 201 74 0 0 chr9 121338626 121338653 -2737519 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1510 245 386 29 0 chr9 121339142 121339282 -2736890 - B1F2 SINE Alu -5 144 1 6 1510 510 259 30 0 chr9 121339282 121339342 -2736830 - ID SINE ID -143 81 18 6 1510 285 300 0 0 chr9 121340076 121340226 -2735946 + (TG)n Simple_repeat Simple_repeat 1 150 0 6 1510 929 133 0 7 chr9 121340793 121340937 -2735235 - B1_Mur1 SINE Alu -1 148 6 6 1510 424 379 34 7 chr9 121341005 121341151 -2735021 - ID_B1 SINE B4 -9 215 66 6 1510 232 351 26 0 chr9 121341187 121341264 -2734908 - Charlie12 DNA MER1_type -2794 79 1 6 1510 289 325 44 74 chr9 121341755 121342038 -2734134 - MTE2a LTR MaLR -8 371 84 6 1510 1104 68 0 0 chr9 121342095 121342258 -2733914 + (TG)n Simple_repeat Simple_repeat 1 163 0 6 1510 333 0 0 0 chr9 121342258 121342294 -2733878 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1510 198 103 0 0 chr9 121342294 121342323 -2733849 + (TATG)n Simple_repeat Simple_repeat 2 30 0 6 1510 1921 251 53 6 chr9 121343259 121343745 -2732427 - RLTR11A2 LTR ERVK -18 509 1 6 1510 493 290 15 0 chr9 121344162 121344293 -2731879 + ID_B1 SINE B4 84 216 -8 6 1510 405 0 0 0 chr9 121344696 121344741 -2731431 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1510 530 306 6 6 chr9 121345183 121345357 -2730815 + (CA)n Simple_repeat Simple_repeat 1 174 0 6 1510 244 299 39 0 chr9 121345467 121345544 -2730628 + PB1D10 SINE Alu 32 111 -6 6 1510 926 202 46 0 chr9 121347159 121347332 -2728840 - B3 SINE B2 -10 206 26 6 1510 756 205 0 0 chr9 121348320 121348481 -2727691 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 6 1510 4626 111 51 46 chr9 121348508 121349313 -2726859 + RMER17D2 LTR ERVK 1 809 0 6 1510 761 192 0 17 chr9 121349319 121349499 -2726673 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 6 1510 22 0 0 0 chr9 121352407 121352429 -2723743 + AT_rich Low_complexity Low_complexity 1 22 0 6 1510 428 258 71 19 chr9 121352445 121352599 -2723573 - RSINE1 SINE B4 -1 164 3 6 1510 211 318 144 2 chr9 121353296 121353448 -2722724 - MIRc SINE MIR -75 187 20 6 1510 846 194 21 0 chr9 121354078 121354222 -2721950 - B1_Mur2 SINE Alu 0 149 3 6 1510 684 213 27 41 chr9 121354241 121354388 -2721784 - B1F SINE Alu 0 149 5 6 1510 407 197 325 8 chr9 121356449 121356572 -2719600 + RSINE1 SINE B4 1 162 -3 6 1510 546 203 0 0 chr9 121356586 121356729 -2719443 + (CA)n Simple_repeat Simple_repeat 2 144 0 6 1510 401 284 0 4 chr9 121356742 121356992 -2719180 + (CA)n Simple_repeat Simple_repeat 1 248 0 6 1510 315 0 0 0 chr9 121357008 121357043 -2719129 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1510 454 250 46 0 chr9 121357574 121357682 -2718490 + PB1D7 SINE Alu 3 115 -5 6 1510 23 33 0 0 chr9 121358808 121358838 -2717334 + AT_rich Low_complexity Low_complexity 1 30 0 6 1510 215 224 198 12 chr9 121358845 121358931 -2717241 - RSINE1 SINE B4 0 165 64 6 1510 279 256 84 116 chr9 121358995 121359150 -2717022 - RMER15 LTR ERVL -11 564 415 6 1510 507 283 42 73 chr9 121359167 121359473 -2716699 + B4 SINE B4 3 270 -22 6 1510 26 0 0 0 chr9 121359512 121359538 -2716634 + AT_rich Low_complexity Low_complexity 1 26 0 6 1510 2187 61 0 96 chr9 121361369 121361712 -2714460 - ORR1A2 LTR MaLR -17 310 1 6 1510 372 206 0 89 chr9 121367419 121367520 -2708652 + MT2B LTR ERVL 173 264 -337 6 1510 668 136 17 0 chr9 121367436 121367554 -2708618 + B1_Mus2 SINE Alu 28 147 0 6 1510 234 0 0 0 chr9 121369801 121369827 -2706345 + (GGA)n Simple_repeat Simple_repeat 1 26 0 6 1511 1741 21 0 0 chr9 121372708 121372901 -2703271 - B2_Mm1a SINE B2 0 193 1 6 1511 414 0 0 0 chr9 121373354 121373400 -2702772 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1511 387 243 29 10 chr9 121373744 121373848 -2702324 + PB1D10 SINE Alu 9 114 -3 6 1511 447 19 0 0 chr9 121374300 121374352 -2701820 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1511 974 226 25 0 chr9 121374598 121374797 -2701375 + ID_B1 SINE B4 18 221 -3 6 1511 251 213 0 0 chr9 121376902 121376963 -2699209 + T-rich Low_complexity Low_complexity 1 61 0 6 1511 22 0 0 0 chr9 121376976 121376998 -2699174 + AT_rich Low_complexity Low_complexity 1 22 0 6 1511 401 148 475 0 chr9 121378313 121378414 -2697758 + B1_Mur2 SINE Alu 1 149 0 6 1511 512 273 212 14 chr9 121378424 121378636 -2697536 + B4 SINE B4 39 292 0 6 1511 195 42 0 0 chr9 121379189 121379213 -2696959 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 6 1511 216 0 0 0 chr9 121383381 121383405 -2692767 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1511 234 0 0 0 chr9 121383405 121383430 -2692742 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 1511 729 251 67 6 chr9 121384039 121384219 -2691953 - B3A SINE B2 -5 193 3 6 1511 234 286 51 83 chr9 121384751 121384932 -2691240 + MIRb SINE MIR 2 183 -93 6 1511 711 299 100 24 chr9 121385018 121385309 -2690863 - ORR1E LTR MaLR -6 353 41 6 1511 723 54 0 0 chr9 121385839 121385931 -2690241 + (TC)n Simple_repeat Simple_repeat 2 93 0 6 1511 528 16 0 0 chr9 121387024 121387085 -2689087 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1511 332 227 32 64 chr9 121387193 121387287 -2688885 + MTE2b LTR MaLR 8 98 -321 6 1511 423 56 0 0 chr9 121387288 121387342 -2688830 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1511 339 299 8 41 chr9 121387343 121387465 -2688707 + MTE2b LTR MaLR 67 184 -195 6 1511 1145 171 37 14 chr9 121388010 121388224 -2687948 + URR1B DNA MER1_type 7 225 0 7 1511 252 0 0 0 chr9 121388503 121388531 -2687641 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1511 1743 173 217 61 chr9 121388843 121389242 -2686930 + RMER15 LTR ERVL 28 520 -55 7 1511 1623 26 16 0 chr9 121389242 121389431 -2686741 - B2_Mm1a SINE B2 0 193 2 7 1511 1743 173 217 61 chr9 121389431 121389505 -2686667 + RMER15 LTR ERVL 521 575 0 7 1511 378 0 0 0 chr9 121389702 121389744 -2686428 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1511 24 0 0 0 chr9 121390089 121390113 -2686059 + AT_rich Low_complexity Low_complexity 1 24 0 7 1511 1416 89 0 5 chr9 121390126 121390317 -2685855 + B2_Mm2 SINE B2 2 191 -4 7 1511 716 287 98 15 chr9 121390382 121390647 -2685525 - B4A SINE B4 -3 289 3 7 1511 261 279 209 47 chr9 121390652 121390863 -2685309 - L2 LINE L2 -763 2656 2412 7 1511 906 313 24 4 chr9 121391051 121391301 -2684871 - B4A SINE B4 -14 278 24 7 1511 1095 66 0 0 chr9 121391618 121391754 -2684418 + B1_Mm SINE Alu 12 147 0 7 1511 255 230 0 0 chr9 121391820 121391907 -2684265 + (TG)n Simple_repeat Simple_repeat 2 88 0 7 1511 1879 26 95 0 chr9 121392007 121392238 -2683934 + L1Md_F2 LINE L1 6315 6567 -15 7 1511 1205 225 182 9 chr9 121392370 121392711 -2683461 - MTD LTR MaLR -14 405 6 7 1511 1997 153 74 3 chr9 121393444 121393797 -2682375 - ORR1C1 LTR MaLR 0 378 1 7 1511 421 347 39 43 chr9 121393857 121394065 -2682107 - MTEa LTR MaLR -96 283 77 7 1511 261 325 67 6 chr9 121394281 121394477 -2681695 + L1MD2 LINE L1 953 1159 -5481 7 1511 466 195 29 0 chr9 121394577 121394992 -2681180 + (TG)n Simple_repeat Simple_repeat 1 427 0 7 1511 258 288 72 104 chr9 121394998 121395083 -2681089 - B4A SINE B4 -1 291 110 7 1511 477 211 72 13 chr9 121395083 121395206 -2680966 - PB1D10 SINE Alu -18 132 3 7 1511 258 288 72 104 chr9 121395206 121395219 -2680953 - B4A SINE B4 -1 109 78 7 1511 547 294 56 7 chr9 121395350 121395494 -2680678 - RSINE1 SINE B4 -13 152 2 7 1511 401 269 191 16 chr9 121395754 121395943 -2680229 - L2a LINE L2 -4 3422 3201 7 1511 1066 287 49 11 chr9 121396399 121396684 -2679488 + MTEa LTR MaLR 19 314 -65 7 1511 851 228 101 10 chr9 121397263 121397558 -2678614 - MTEa LTR MaLR -37 322 1 7 1511 242 135 34 119 chr9 121398046 121398105 -2678067 + RMER15 LTR ERVL 1 54 -521 7 1511 351 253 42 10 chr9 121398177 121398273 -2677899 + RMER15 LTR ERVL 274 372 -203 7 1511 594 284 83 50 chr9 121399424 121399665 -2676507 - B4 SINE B4 0 292 44 7 1511 259 301 87 87 chr9 121399670 121399819 -2676353 + B4A SINE B4 125 273 -19 7 1511 527 29 0 14 chr9 121399850 121399920 -2676252 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1511 387 0 0 0 chr9 121399920 121399962 -2676210 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1511 542 293 14 21 chr9 121399982 121400125 -2676047 + RSINE1 SINE B4 3 144 -21 7 1511 2387 129 51 0 chr9 121400165 121400415 -2675757 + Lx4A LINE L1 6667 6930 -128 7 1511 360 0 0 0 chr9 121400415 121400455 -2675717 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1511 2387 129 51 0 chr9 121400455 121400577 -2675595 + Lx4A LINE L1 6931 7057 -1 7 1511 347 147 29 0 chr9 121402213 121402281 -2673891 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 7 1511 254 229 0 0 chr9 121402283 121402331 -2673841 + CT-rich Low_complexity Low_complexity 2 49 0 7 1511 405 0 0 0 chr9 121403983 121404028 -2672144 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1511 435 87 0 0 chr9 121404028 121404097 -2672075 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1511 340 211 156 0 chr9 121406322 121406412 -2669760 + B4A SINE B4 1 104 -188 7 1511 306 0 0 0 chr9 121407298 121407332 -2668840 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1511 1197 37 0 0 chr9 121407332 121407468 -2668704 - B1_Mm SINE Alu -10 137 2 7 1511 390 42 0 0 chr9 121407609 121407657 -2668515 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1511 298 281 196 22 chr9 121407751 121407889 -2668283 + LTR16E1 LTR ERVL 310 471 -67 7 1511 1030 194 97 97 chr9 121408276 121408596 -2667576 + ORR1E LTR MaLR 8 327 -32 7 1511 335 113 0 70 chr9 121408753 121408810 -2667362 - L1_Mus3 LINE L1 -385 6253 6201 7 1511 2873 86 2 10 chr9 121408810 121409209 -2666963 + L1_Mus3 LINE L1 6242 6637 -1 7 1511 920 195 119 0 chr9 121409298 121409454 -2666718 + B3 SINE B2 5 163 -53 7 1511 618 71 0 0 chr9 121409454 121409538 -2666634 + (TCCA)n Simple_repeat Simple_repeat 4 87 0 7 1511 920 195 119 0 chr9 121409538 121409566 -2666606 + B3 SINE B2 164 210 -6 7 1511 305 327 18 0 chr9 121411015 121411128 -2665044 - LTR16E1 LTR ERVL -1 537 423 7 1511 380 314 131 52 chr9 121411228 121411416 -2664756 - MLT1A0 LTR MaLR 0 365 156 7 1511 1158 192 34 0 chr9 121411416 121411624 -2664548 - B3 SINE B2 0 216 2 7 1511 380 314 131 52 chr9 121411624 121411741 -2664431 - MLT1A0 LTR MaLR -210 155 36 7 1511 473 264 6 152 chr9 121411797 121411888 -2664284 + ID_B1 SINE B4 84 174 -50 7 1511 192 77 0 0 chr9 121411888 121411914 -2664258 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1511 473 264 6 152 chr9 121411914 121411987 -2664185 + ID_B1 SINE B4 175 224 0 7 1511 738 274 44 40 chr9 121412206 121412457 -2663715 + RMER5 LTR ERV1 86 337 -197 7 1511 293 277 17 122 chr9 121412482 121412597 -2663575 + RMER5 LTR ERV1 432 534 0 7 1511 1164 238 56 73 chr9 121413018 121413406 -2662766 + MTE2a LTR MaLR 1 385 -34 7 1511 423 0 0 0 chr9 121413406 121413453 -2662719 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1511 1164 224 57 80 chr9 121413453 121413480 -2662692 + MTE2a LTR MaLR 346 378 -1 7 1511 1898 197 38 5 chr9 121413752 121414124 -2662048 + ORR1C2 LTR MaLR 1 384 0 7 1511 303 232 0 0 chr9 121414446 121414528 -2661644 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 1511 225 293 86 0 chr9 121415554 121415612 -2660560 + RMER5 LTR ERV1 406 468 -66 7 1511 378 240 40 0 chr9 121416551 121416626 -2659546 + ORR1E LTR MaLR 9 86 -273 7 1511 241 222 56 4 chr9 121416645 121416658 -2659514 - PB1 SINE Alu -1 148 120 7 1511 253 158 0 0 chr9 121416658 121416696 -2659476 - ID_B1 SINE B4 -13 211 174 7 1511 241 222 56 4 chr9 121416696 121416713 -2659459 - PB1 SINE Alu -1 119 75 7 1511 985 229 128 64 chr9 121416733 121417046 -2659126 - RLTR14 LTR ERV1 -49 333 1 7 1511 597 233 81 14 chr9 121417046 121417193 -2658979 - ID_B1 SINE B4 -64 160 4 7 1511 216 0 0 0 chr9 121417688 121417712 -2658460 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1511 257 319 110 0 chr9 121417738 121417829 -2658343 + Kanga1 DNA Tc2 37 137 -1608 7 1511 372 22 0 0 chr9 121417953 121417998 -2658174 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1511 2452 88 25 0 chr9 121418098 121418417 -2657755 - ORR1A2 LTR MaLR 0 327 1 7 1511 11778 119 52 13 chr9 121418417 121420305 -2655867 - ORR1A2-int LTR MaLR 0 1963 1 7 1511 2352 81 13 3 chr9 121420309 121420618 -2655554 - ORR1A2 LTR MaLR -8 319 8 7 1511 1749 201 121 35 chr9 121420635 121421002 -2655170 - MT2A LTR ERVL -40 561 73 7 1511 779 64 0 2 chr9 121421002 121421113 -2655059 + B2_Mm2 SINE B2 1 109 -107 7 1511 197 33 0 32 chr9 121421115 121421146 -2655026 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 7 1511 589 287 98 116 chr9 121421146 121421239 -2654933 - MT2A LTR ERVL -500 101 2 7 1511 575 353 94 46 chr9 121421239 121421661 -2654511 + Kanga1 DNA Tc2 134 577 -1168 7 1511 596 269 87 30 chr9 121421656 121421886 -2654286 + B4 SINE B4 29 271 -21 7 1511 198 0 0 0 chr9 121421898 121421920 -2654252 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 7 1511 328 137 20 0 chr9 121422384 121422435 -2653737 + B3A SINE B2 2 53 -145 7 1511 23 33 0 0 chr9 121422618 121422648 -2653524 + AT_rich Low_complexity Low_complexity 1 30 0 7 1511 445 261 118 42 chr9 121423098 121423242 -2652930 - B3A SINE B2 -36 162 8 7 1511 423 38 0 0 chr9 121424360 121424413 -2651759 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1511 413 256 119 70 chr9 121424422 121424565 -2651607 - B4 SINE B4 -136 156 7 7 1511 300 348 181 60 chr9 121424615 121425013 -2651159 + MLT1K LTR MaLR 103 548 -47 7 1511 213 318 124 11 chr9 121426961 121427050 -2649122 + L2b LINE L2 3265 3363 -12 7 1511 182 37 37 0 chr9 121427376 121427403 -2648769 + (TGGGGG)n Simple_repeat Simple_repeat 1 28 0 7 1511 952 279 81 8 chr9 121427549 121427795 -2648377 + B4 SINE B4 29 292 0 7 1511 243 146 0 0 chr9 121427795 121427836 -2648336 + (CACG)n Simple_repeat Simple_repeat 3 43 0 7 1511 548 274 79 73 chr9 121428632 121428797 -2647375 - B4 SINE B4 -124 168 3 7 1511 380 282 0 0 chr9 121428821 121428899 -2647273 - PB1D7 SINE Alu -6 114 37 7 1511 764 203 49 0 chr9 121429025 121429168 -2647004 + B1_Mur4 SINE Alu 1 150 0 7 1511 876 126 0 0 chr9 121431124 121431298 -2644874 + (GA)n Simple_repeat Simple_repeat 1 174 0 7 1511 378 214 0 0 chr9 121431716 121431800 -2644372 + CT-rich Low_complexity Low_complexity 1 84 0 7 1511 708 202 25 167 chr9 121431800 121431820 -2644352 - ID_B1 SINE B4 -46 246 213 7 1511 1116 63 0 0 chr9 121431820 121431962 -2644210 - B1_Mus2 SINE Alu 0 147 6 7 1511 708 202 25 167 chr9 121431962 121432079 -2644093 - ID_B1 SINE B4 -46 212 5 7 1511 228 67 0 0 chr9 121432091 121432121 -2644051 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1511 424 308 42 60 chr9 121432293 121432459 -2643713 + B4A SINE B4 1 163 -129 7 1511 491 305 12 61 chr9 121432434 121432598 -2643574 - B4A SINE B4 -134 158 3 7 1511 976 207 59 5 chr9 121432624 121432828 -2643344 - B3 SINE B2 -1 215 1 7 1511 981 245 153 90 chr9 121433178 121433499 -2642673 + MTD LTR MaLR 38 379 -21 7 1511 867 226 101 15 chr9 121433527 121433725 -2642447 + B3 SINE B2 2 216 0 7 1511 420 20 0 0 chr9 121434433 121434482 -2641690 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1511 587 288 12 12 chr9 121434492 121434654 -2641518 + ID_B1 SINE B4 63 224 0 7 1511 566 312 25 19 chr9 121434739 121434896 -2641276 - RSINE1 SINE B4 0 165 8 7 1511 234 0 0 0 chr9 121435809 121435835 -2640337 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1511 616 223 119 19 chr9 121435839 121435999 -2640173 - B3A SINE B2 -22 176 1 7 1511 1426 227 51 51 chr9 121436064 121436346 -2639826 + MTEa LTR MaLR 3 285 -94 7 1511 3171 56 33 2 chr9 121436346 121436741 -2639431 + MTB_Mm LTR MaLR 1 407 0 8 1511 1426 227 51 51 chr9 121436741 121436829 -2639343 + MTEa LTR MaLR 286 373 -6 7 1511 363 314 12 0 chr9 121437548 121437634 -2638538 + ID_B1 SINE B4 84 170 -54 8 1511 349 338 43 58 chr9 121437634 121437685 -2638487 + B1F1 SINE Alu 3 137 -12 8 1511 189 94 0 0 chr9 121439824 121439856 -2636316 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 8 1511 227 291 156 115 chr9 121441110 121441405 -2634767 + MLT1C LTR MaLR 94 400 -67 8 1511 231 36 0 0 chr9 121441474 121441502 -2634670 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1511 1711 26 0 0 chr9 121441502 121441695 -2634477 - B2_Mm1a SINE B2 0 193 1 8 1511 602 153 0 0 chr9 121442482 121442567 -2633605 + PB1D10 SINE Alu 4 88 -29 8 1511 1075 316 111 23 chr9 121442566 121443043 -2633129 - MTE-int LTR MaLR -901 679 161 8 1511 635 298 26 51 chr9 121443038 121443332 -2632840 + MTD LTR MaLR 18 288 -133 8 1511 440 240 15 76 chr9 121443363 121443494 -2632678 + MTD LTR MaLR 282 404 -15 8 1511 273 196 0 0 chr9 121443907 121443963 -2632209 + CT-rich Low_complexity Low_complexity 5 60 0 8 1511 348 83 0 0 chr9 121443963 121444011 -2632161 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1511 813 143 0 145 chr9 121444011 121444183 -2631989 - ORR1D1 LTR MaLR -227 147 1 8 1511 1435 335 77 119 chr9 121444183 121444373 -2631799 - ORR1C2-int LTR MaLR -53 1527 1340 8 1511 654 247 20 45 chr9 121444373 121444572 -2631600 + B3A SINE B2 5 198 0 8 1511 4859 236 54 66 chr9 121444572 121445975 -2630197 - ORR1C2-int LTR MaLR -241 1339 2 8 1511 1623 202 78 3 chr9 121445975 121446332 -2629840 - ORR1C2 LTR MaLR 0 384 1 8 1511 962 132 210 0 chr9 121446363 121446530 -2629642 - B3 SINE B2 -14 202 1 8 1511 935 231 107 37 chr9 121448018 121448288 -2627884 + B4 SINE B4 4 292 0 8 1511 326 268 0 22 chr9 121448297 121448480 -2627692 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1511 207 0 0 0 chr9 121448658 121448681 -2627491 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 8 1511 351 0 0 0 chr9 121448911 121448950 -2627222 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1511 568 245 69 88 chr9 121448988 121449293 -2626879 + RMER10A LTR ERVL 131 429 -13 8 1511 877 249 6 0 chr9 121449292 121449465 -2626707 - ID_B1 SINE B4 -49 175 2 8 1511 294 284 0 58 chr9 121449471 121449557 -2626615 - B1F1 SINE Alu -20 129 49 8 1511 472 323 175 0 chr9 121451187 121451376 -2624796 - B4A SINE B4 -19 273 52 8 1511 1698 154 14 73 chr9 121451376 121451734 -2624438 + RLTR15 LTR ERVK 1 337 -22 8 1511 1859 309 66 66 chr9 121453020 121454358 -2621814 + MYSERV-int LTR ERVK 3775 5107 -1443 8 1511 1934 100 24 147 chr9 121454358 121454733 -2621439 - ORR1A4 LTR MaLR 0 329 1 8 1511 699 12 0 0 chr9 121454737 121454817 -2621355 + (TTTTC)n Simple_repeat Simple_repeat 1 80 0 8 1511 1859 309 66 66 chr9 121454817 121454904 -2621268 + MYSERV-int LTR ERVK 5108 5198 -1352 8 1511 2285 199 27 23 chr9 121454894 121454929 -2621243 + MYSERV-int LTR ERVK 6022 6056 -494 8 1511 3827 95 99 27 chr9 121454929 121455515 -2620657 - RLTR5_Mm LTR ERV1 0 628 1 8 1511 2285 199 27 23 chr9 121455515 121456004 -2620168 + MYSERV-int LTR ERVK 6057 6548 -2 8 1511 1619 158 54 36 chr9 121456006 121456340 -2619832 + RLTR15 LTR ERVK 1 340 -19 8 1511 301 200 0 0 chr9 121456349 121456409 -2619763 - B4A SINE B4 -232 60 1 8 1511 563 317 0 0 chr9 121457048 121457228 -2618944 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1511 255 161 0 0 chr9 121457294 121457350 -2618822 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1511 460 256 52 13 chr9 121457386 121457540 -2618632 + (CATG)n Simple_repeat Simple_repeat 3 162 0 8 1511 922 298 64 19 chr9 121457546 121457813 -2618359 - B4 SINE B4 -6 286 8 8 1511 286 314 11 11 chr9 121458538 121458625 -2617547 - MTEa LTR MaLR -5 374 288 8 1511 186 43 0 0 chr9 121460131 121460154 -2616018 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 8 1511 516 60 0 12 chr9 121460182 121460266 -2615906 - L1Md_F2 LINE L1 0 6582 6500 8 1511 1912 83 35 0 chr9 121460267 121460521 -2615651 - MTB_Mm LTR MaLR -7 400 138 8 1511 2190 117 158 18 chr9 121460526 121460918 -2615254 - RLTR44B LTR ERVK -2 447 1 8 1511 1199 38 12 53 chr9 121460918 121461059 -2615113 - MTB_Mm LTR MaLR -266 134 1 8 1511 219 229 0 0 chr9 121461164 121461212 -2614960 + CT-rich Low_complexity Low_complexity 5 52 0 8 1511 1034 214 170 21 chr9 121461433 121461762 -2614410 + MTEa LTR MaLR 2 379 0 8 1511 551 333 32 21 chr9 121461781 121461971 -2614201 + MER2 DNA MER2_type 112 303 -42 8 1511 215 173 0 19 chr9 121462008 121462061 -2614111 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 8 1511 242 0 0 57 chr9 121462068 121462103 -2614069 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 8 1511 761 143 0 58 chr9 121462106 121462257 -2613915 - B1_Mur1 SINE Alu -13 136 3 8 1511 183 42 0 0 chr9 121462260 121462284 -2613888 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1511 432 276 11 141 chr9 121462284 121462306 -2613866 - ID SINE ID -143 81 58 8 1511 870 285 157 22 chr9 121462511 121462920 -2613252 + Lx8 LINE L1 6569 7032 -441 8 1511 199 256 102 23 chr9 121463227 121463315 -2612857 - MIR SINE MIR -83 179 85 8 1511 244 328 0 0 chr9 121463520 121463587 -2612585 + MER119 DNA MER1_type 515 581 -2 8 1511 778 259 76 11 chr9 121463727 121463989 -2612183 + B4A SINE B4 1 279 -13 8 1511 499 267 97 32 chr9 121467402 121467619 -2608553 + Lx8 LINE L1 6963 7193 -280 8 1511 604 289 44 114 chr9 121467744 121468173 -2607999 + RMER10A LTR ERVL 18 416 -26 8 1511 216 0 0 0 chr9 121468214 121468238 -2607934 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1511 842 217 12 18 chr9 121468245 121468399 -2607773 + B3A SINE B2 3 157 -41 8 1511 450 0 0 0 chr9 121468399 121468449 -2607723 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1511 842 217 12 18 chr9 121468449 121468463 -2607709 + B3A SINE B2 158 170 -28 8 1511 501 227 52 52 chr9 121468505 121468640 -2607532 + B1F SINE Alu 15 149 0 8 1511 181 312 12 49 chr9 121468950 121469031 -2607141 + MIRb SINE MIR 89 166 -102 8 1511 647 197 65 14 chr9 121469609 121469748 -2606424 - Lx8 LINE L1 -431 7042 6897 8 1511 315 0 0 0 chr9 121469798 121469833 -2606339 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1511 738 252 56 99 chr9 121470942 121471246 -2604926 + B4A SINE B4 2 292 0 8 1511 595 188 11 17 chr9 121471261 121471440 -2604732 + (CA)n Simple_repeat Simple_repeat 2 179 0 8 1511 258 143 0 0 chr9 121471951 121472000 -2604172 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1511 271 132 0 159 chr9 121472006 121472069 -2604103 - B4A SINE B4 0 292 240 8 1511 351 0 0 0 chr9 121472146 121472185 -2603987 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1511 624 237 89 0 chr9 121472202 121472337 -2603835 - B3A SINE B2 -51 147 1 8 1511 951 211 96 0 chr9 121472337 121472543 -2603629 - B4 SINE B4 -65 227 2 8 1511 576 286 32 19 chr9 121472959 121473113 -2603059 - B3 SINE B2 -2 214 60 8 1511 407 95 48 0 chr9 121473113 121473176 -2602996 + LTRIS5 LTR ERV1 1 66 -381 8 1511 1130 133 46 23 chr9 121473187 121473403 -2602769 + LTRIS5 LTR ERV1 227 447 0 8 1511 344 148 0 0 chr9 121473404 121473458 -2602714 - B3A SINE B2 -137 61 8 8 1511 180 188 31 15 chr9 121473510 121473575 -2602597 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 1511 810 232 121 19 chr9 121473587 121473851 -2602321 - B4A SINE B4 0 292 2 8 1511 208 318 0 29 chr9 121474268 121474336 -2601836 - MIR SINE MIR -114 148 83 8 1511 289 292 26 26 chr9 121474341 121474457 -2601715 + L1M2 LINE L1 3356 3471 -2669 8 1511 486 0 0 0 chr9 121474457 121474511 -2601661 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1511 462 269 6 59 chr9 121474625 121474795 -2601377 + L1M2 LINE L1 3650 3810 -2333 8 1511 809 207 140 0 chr9 121474898 121475077 -2601095 + B3 SINE B2 13 216 0 8 1511 2426 118 66 0 chr9 121477160 121477524 -2598648 + ORR1B1 LTR MaLR 7 394 0 8 1511 283 156 0 0 chr9 121477555 121477600 -2598572 - B3 SINE B2 -19 197 153 8 1511 305 53 0 0 chr9 121477605 121477643 -2598529 + RMER6D LTR ERVK 4 41 -679 8 1511 1584 247 107 53 chr9 121477660 121478258 -2597914 + MYSERV-int LTR ERVK 4451 5080 -1470 8 1511 548 270 57 80 chr9 121478264 121478502 -2597670 + RMER4A LTR ERVK 211 556 -29 8 1511 1622 223 16 34 chr9 121478502 121478943 -2597229 + MYSERV-int LTR ERVK 5336 5768 -782 8 1511 1343 129 19 0 chr9 121478940 121479150 -2597022 + RMER6-int LTR ERVK 2964 3177 0 8 1511 1562 102 66 6 chr9 121479150 121479444 -2596728 + RMER6D LTR ERVK 1 349 -371 8 1511 566 116 54 32 chr9 121479460 121479931 -2596241 + (TG)n Simple_repeat Simple_repeat 1 481 0 8 1511 2218 143 29 17 chr9 121479933 121480067 -2596105 + RMER6D LTR ERVK 367 500 -220 8 1511 2632 52 65 0 chr9 121480067 121480392 -2595780 + ORR1A1 LTR MaLR 1 346 0 8 1511 2218 143 29 17 chr9 121480392 121480606 -2595566 + RMER6D LTR ERVK 501 719 -1 8 1511 823 197 0 0 chr9 121480612 121480749 -2595423 - B3 SINE B2 -67 149 13 8 1511 578 181 75 15 chr9 121481486 121481618 -2594554 + B1_Mur3 SINE Alu 12 149 0 8 1511 326 236 45 45 chr9 121481948 121482059 -2594113 - B3A SINE B2 -83 115 5 8 1511 187 336 129 0 chr9 121482448 121482564 -2593608 + MIRc SINE MIR 12 142 -126 8 1511 519 272 109 68 chr9 121482566 121482899 -2593273 - ORR1E LTR MaLR -5 374 9 8 1511 978 238 154 38 chr9 121483616 121483935 -2592237 - MTEa LTR MaLR -5 374 19 8 1511 256 284 15 15 chr9 121484007 121484075 -2592097 - MIRc SINE MIR -110 158 91 8 1511 508 271 54 8 chr9 121484612 121484742 -2591430 + B4 SINE B4 149 284 -8 8 1511 249 33 0 0 chr9 121484824 121484854 -2591318 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1511 2347 190 94 8 chr9 121484919 121485396 -2590776 + RLTR11A LTR ERVK 1 518 -10 8 1511 319 260 26 0 chr9 121486688 121486765 -2589407 - MTEa LTR MaLR -299 80 2 8 1511 1082 129 0 13 chr9 121487565 121487722 -2588450 + B2_Mm2 SINE B2 3 157 -38 8 1511 616 192 94 25 chr9 121487865 121488025 -2588147 + RLTR15 LTR ERVK 1 171 -188 8 1511 353 317 54 47 chr9 121488011 121488269 -2587903 + RLTR15 LTR ERVK 83 342 -17 8 1511 26 74 0 0 chr9 121488757 121488811 -2587361 + AT_rich Low_complexity Low_complexity 1 54 0 8 1511 218 247 13 0 chr9 121488900 121488977 -2587195 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 1511 1220 198 82 57 chr9 121488977 121489256 -2586916 - B4 SINE B4 0 292 7 8 1511 708 192 92 13 chr9 121489482 121489635 -2586537 + B3A SINE B2 1 165 -33 8 1511 811 299 96 39 chr9 121489690 121490045 -2586127 + MTEa LTR MaLR 3 377 -2 9 1511 642 269 14 7 chr9 121490282 121490440 -2585732 - ID_B1 SINE B4 -63 229 70 9 1511 477 188 34 51 chr9 121490625 121490743 -2585429 + RMER15 LTR ERVL 16 131 -444 9 1511 350 312 292 9 chr9 121490777 121491010 -2585162 + RMER15 LTR ERVL 275 573 -2 9 1511 1010 222 14 14 chr9 121491111 121491321 -2584851 + B3 SINE B2 2 211 -5 9 1511 802 295 81 37 chr9 121491359 121491630 -2584542 + B4A SINE B4 10 292 0 9 1511 967 287 64 32 chr9 121491695 121492008 -2584164 + MTEa LTR MaLR 35 357 -22 9 1511 261 313 181 29 chr9 121492476 121492614 -2583558 + MIR SINE MIR 70 228 -34 9 1511 370 279 16 24 chr9 121493685 121493810 -2582362 + GA-rich Low_complexity Low_complexity 3 126 0 9 1511 436 276 77 104 chr9 121494558 121494780 -2581392 + ORR1E LTR MaLR 136 351 -8 9 1511 288 296 104 0 chr9 121494988 121495103 -2581069 + MIR SINE MIR 85 211 -51 9 1511 225 218 105 70 chr9 121495435 121495578 -2580594 + L2b LINE L2 2916 3063 -312 9 1511 587 327 56 89 chr9 121496168 121496597 -2579575 - MLT1D LTR MaLR -90 415 1 9 1511 687 161 19 0 chr9 121496918 121497079 -2579093 + (TG)n Simple_repeat Simple_repeat 2 165 0 9 1511 3598 147 234 14 chr9 121497195 121497934 -2578238 - RMER19B LTR ERVK 0 902 1 9 1511 24 0 0 0 chr9 121498594 121498618 -2577554 + AT_rich Low_complexity Low_complexity 1 24 0 9 1511 242 271 0 0 chr9 121499362 121499410 -2576762 + ID_B1 SINE B4 129 176 -48 9 1511 513 281 152 35 chr9 121499602 121499997 -2576175 - RLTR12B LTR ERVK -12 516 76 9 1511 854 262 115 72 chr9 121500364 121500643 -2575529 + B4A SINE B4 2 292 0 1 1511 211 366 10 0 chr9 121500668 121500769 -2575403 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 1511 269 343 9 29 chr9 121502830 121502935 -2573237 + B4 SINE B4 104 206 -86 3 1511 274 278 54 22 chr9 121502914 121503006 -2573166 + B4 SINE B4 112 206 -86 4 1511 544 271 38 23 chr9 121502985 121503173 -2572999 + B4 SINE B4 82 274 -18 5 1511 225 108 0 0 chr9 121503175 121503212 -2572960 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 188 779 226 155 25 chr9 121503500 121503745 -2572427 + B4A SINE B4 16 292 0 7 1512 645 180 4 0 chr9 121503746 121503987 -2572185 + (CA)n Simple_repeat Simple_repeat 1 242 0 8 1512 497 229 23 62 chr9 121504656 121504786 -2571386 + ID_B1 SINE B4 82 206 -18 9 1512 351 296 16 31 chr9 121505113 121505242 -2570930 + MLT1K LTR MaLR 129 255 -340 1 1512 289 177 16 0 chr9 121505463 121505525 -2570647 - RMER19B LTR ERVK 0 902 840 1 1512 2159 124 28 61 chr9 121505579 121505975 -2570197 - RLTR9A2 LTR ERVK 0 383 1 1 1512 4055 130 133 1 chr9 121505975 121506690 -2569482 - RMER19B LTR ERVK -73 829 20 1 1512 816 217 382 7 chr9 121506806 121507072 -2569100 - MTE2b LTR MaLR -11 368 3 1 1512 279 258 184 117 chr9 121507090 121507296 -2568876 + MTEa LTR MaLR 1 220 -159 1 1512 271 314 8 16 chr9 121507272 121507398 -2568774 + RMER17A LTR ERVK 346 470 -281 1 1512 436 354 11 0 chr9 121507688 121507916 -2568256 + (TG)n Simple_repeat Simple_repeat 1 230 0 1 1512 272 278 93 0 chr9 121508108 121508205 -2567967 + PB1D10 SINE Alu 1 106 -11 1 1512 348 24 0 0 chr9 121508205 121508246 -2567926 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1512 395 218 0 49 chr9 121508247 121508329 -2567843 + ID4 SINE ID 3 80 -3 1 1512 512 265 12 81 chr9 121508937 121509097 -2567075 + B4A SINE B4 2 150 -142 2 1512 675 256 65 5 chr9 121510547 121510732 -2565440 - ID_B1 SINE B4 0 224 29 2 1512 843 251 14 36 chr9 121511005 121511228 -2564944 + ID_B1 SINE B4 1 218 -6 2 1512 423 0 0 0 chr9 121511281 121511328 -2564844 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1512 390 42 0 0 chr9 121511328 121511375 -2564797 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1512 480 246 28 21 chr9 121511470 121511611 -2564561 - RSINE1 SINE B4 -4 161 20 2 1512 1424 194 118 55 chr9 121512187 121512568 -2563604 + MTD LTR MaLR 13 417 -2 2 1512 345 245 21 187 chr9 121512788 121513119 -2563053 + RMER10A LTR ERVL 142 417 -25 2 1512 547 255 0 9 chr9 121513198 121513309 -2562863 + B3A SINE B2 3 112 -86 2 1512 377 249 43 12 chr9 121513427 121513590 -2562582 + (TA)n Simple_repeat Simple_repeat 2 169 0 2 1512 533 301 40 14 chr9 121513983 121514131 -2562041 - ETnERV2-int LTR ERVK -185 7221 7070 3 1512 1060 253 141 3 chr9 121515076 121515409 -2560763 - MTEa LTR MaLR 0 379 1 3 1512 376 290 32 0 chr9 121516923 121517016 -2559156 + MTE2b LTR MaLR 3 98 -281 3 1512 837 307 35 11 chr9 121516991 121517249 -2558923 + MTE2b LTR MaLR 35 298 -81 3 1512 618 255 26 13 chr9 121517249 121517404 -2558768 + MTD LTR MaLR 1 157 -262 3 1512 346 260 125 2 chr9 121517662 121517760 -2558412 + MER77 LTR ERVL 440 589 -18 3 1512 563 216 182 7 chr9 121517851 121518005 -2558167 - Lx8 LINE L1 -326 7147 6967 3 1512 1141 233 9 0 chr9 121518172 121518382 -2557790 - B3 SINE B2 -3 213 2 3 1512 409 256 52 8 chr9 121518534 121518668 -2557504 + L1MDa LINE L1 250 389 -6244 3 1512 264 320 51 0 chr9 121519244 121519322 -2556850 + ID4_ SINE ID 1 82 -1 3 1512 842 261 86 8 chr9 121519428 121519671 -2556501 - ORR1D2 LTR MaLR 0 370 109 3 1512 892 185 110 11 chr9 121519701 121519892 -2556280 - ORR1C2 LTR MaLR 0 384 175 4 1512 566 208 19 6 chr9 121519892 121520052 -2556120 + GA-rich Low_complexity Low_complexity 5 166 0 4 1512 863 171 0 138 chr9 121520052 121520262 -2555910 - ORR1C2 LTR MaLR -193 181 1 4 1512 278 243 40 0 chr9 121520262 121520334 -2555838 - ORR1D1 LTR MaLR -299 75 1 4 1512 5041 123 19 3 chr9 121521283 121522008 -2554164 + RMER19A LTR ERVK 1 737 0 4 1512 1190 69 0 0 chr9 121522058 121522203 -2553969 - B1_Mm SINE Alu -1 146 2 4 1512 2528 172 70 44 chr9 121522205 121522559 -2553613 - RMER1C Other Other -11 1331 978 4 1512 1755 144 31 177 chr9 121522559 121523039 -2553133 - RMER17C LTR ERVK 0 410 1 4 1512 2528 172 70 44 chr9 121523039 121523224 -2552948 - RMER1C Other Other -365 977 778 4 1512 3135 73 159 13 chr9 121524743 121525190 -2550982 - RLTR1B LTR ERV1 0 512 1 4 1512 318 271 20 50 chr9 121526398 121526499 -2549673 + PB1D10 SINE Alu 20 117 0 4 1512 221 210 16 0 chr9 121526500 121526562 -2549610 + GA-rich Low_complexity Low_complexity 4 66 0 4 1512 454 298 122 110 chr9 121526683 121527181 -2548991 + MLT1F2 LTR MaLR 57 560 0 5 1512 981 113 0 0 chr9 121527436 121527586 -2548586 + (TCC)n Simple_repeat Simple_repeat 2 151 0 5 1512 533 265 8 8 chr9 121527590 121527723 -2548449 - ID_B1 SINE B4 -14 210 78 5 1512 280 237 17 0 chr9 121527723 121527782 -2548390 - MIRm SINE MIR -124 152 93 5 1512 464 298 81 12 chr9 121528040 121528200 -2547972 + B4A SINE B4 100 270 -22 5 1512 330 26 0 0 chr9 121528207 121528246 -2547926 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1512 549 182 0 48 chr9 121528276 121528380 -2547792 + B1_Mur4 SINE Alu 46 144 -6 5 1512 539 284 85 65 chr9 121529563 121529861 -2546311 + B4 SINE B4 5 272 -20 5 1512 238 133 60 34 chr9 121529870 121529987 -2546185 + (CA)n Simple_repeat Simple_repeat 1 120 0 5 1512 186 148 68 19 chr9 121530012 121530115 -2546057 + (CA)n Simple_repeat Simple_repeat 1 108 0 5 1512 387 0 0 0 chr9 121530132 121530175 -2545997 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1512 250 159 33 16 chr9 121530983 121531056 -2545116 + T-rich Low_complexity Low_complexity 1 74 0 6 1512 718 164 8 0 chr9 121531056 121531178 -2544994 - B3 SINE B2 -5 211 89 6 1512 242 116 23 0 chr9 121531492 121531535 -2544637 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 1512 201 143 0 0 chr9 121531535 121531570 -2544602 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1512 424 198 11 11 chr9 121531570 121531749 -2544423 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 6 1512 234 163 0 0 chr9 121531758 121531801 -2544371 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1512 440 219 6 0 chr9 121531818 121531982 -2544190 + CT-rich Low_complexity Low_complexity 2 166 0 6 1512 371 182 78 22 chr9 121532062 121532152 -2544020 + RMER10A LTR ERVL 321 415 -27 6 1512 513 198 9 49 chr9 121532129 121532260 -2543912 - B3 SINE B2 -65 130 1 6 1512 1033 212 24 5 chr9 121532270 121532483 -2543689 - ID_B1 SINE B4 -7 217 1 6 1512 627 290 150 20 chr9 121534421 121534674 -2541498 - Tigger7 DNA MER2_type -107 2384 2099 7 1512 434 292 116 6 chr9 121534831 121535003 -2541169 - Lx8 LINE L1 -5 7468 7278 7 1512 3058 289 55 65 chr9 121534999 121535116 -2541056 - L1_Mur3 LINE L1 -3143 2737 2625 7 1512 1734 164 130 3 chr9 121535116 121535446 -2540726 + ORR1D1 LTR MaLR 1 372 -2 7 1512 3058 289 55 65 chr9 121535446 121536360 -2539812 - L1_Mur3 LINE L1 -3256 2624 1711 7 1512 751 223 118 10 chr9 121536360 121536555 -2539617 - B3 SINE B2 0 216 1 7 1512 3058 289 55 65 chr9 121536555 121536769 -2539403 - L1_Mur3 LINE L1 -4170 1710 1495 7 1512 513 0 0 0 chr9 121536769 121536826 -2539346 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1512 3058 289 55 65 chr9 121536826 121537127 -2539045 - L1_Mur3 LINE L1 -4386 1494 1205 7 1512 358 332 53 53 chr9 121537131 121537338 -2538834 - L1M4 LINE L1 -5300 1242 1036 7 1512 7378 52 4 8 chr9 121537410 121538363 -2537809 - L1_Mus1 LINE L1 -1 6566 5618 7 1512 756 172 11 28 chr9 121538764 121538943 -2537229 + T-rich Low_complexity Low_complexity 3 178 0 7 1512 274 31 0 0 chr9 121538943 121538975 -2537197 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 7 1512 213 121 0 0 chr9 121538975 121539008 -2537164 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 8 1512 1058 151 54 5 chr9 121539009 121539195 -2536977 - B2_Mm2 SINE B2 0 195 1 8 1512 21 0 0 0 chr9 121539267 121539288 -2536884 + AT_rich Low_complexity Low_complexity 1 21 0 8 1512 1286 162 24 14 chr9 121539290 121539503 -2536669 - B3 SINE B2 0 216 2 8 1512 233 206 14 87 chr9 121540012 121540081 -2536091 + Charlie24 DNA MER1_type 1328 1391 -1059 8 1512 1376 279 65 36 chr9 121540651 121541094 -2535078 - Lx8 LINE L1 -309 7164 6709 7 1512 262 364 76 7 chr9 121541125 121541269 -2534903 + MLT1F1 LTR MaLR 127 280 -232 8 1512 388 218 167 83 chr9 121541328 121541448 -2534724 + MLT1F1 LTR MaLR 256 409 -160 8 1512 655 241 60 30 chr9 121541534 121541701 -2534471 + MLT1B LTR MaLR 1 172 -218 8 1512 976 287 43 14 chr9 121541708 121541987 -2534185 + B4 SINE B4 2 288 -4 8 1512 180 0 0 0 chr9 121542037 121542057 -2534115 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1512 968 137 0 14 chr9 121543963 121544111 -2532061 + B1_Mus2 SINE Alu 1 146 -1 8 1512 927 168 4 0 chr9 121544113 121544351 -2531821 + GA-rich Low_complexity Low_complexity 1 238 0 9 1512 383 300 135 29 chr9 121544612 121544856 -2531316 + RCHARR1 DNA MER1_type 1 270 -704 9 1512 270 339 119 5 chr9 121546018 121546211 -2529961 + MT2A LTR ERVL 319 533 0 9 1512 434 212 17 23 chr9 121546424 121546598 -2529574 + CT-rich Low_complexity Low_complexity 3 175 0 9 1512 2328 137 40 2 chr9 121547209 121547605 -2528567 + MTC LTR MaLR 1 411 -10 9 1512 557 301 77 0 chr9 121547947 121548103 -2528069 + ID_B1 SINE B4 3 170 -54 9 1512 282 289 67 0 chr9 121548031 121548121 -2528051 + PB1D10 SINE Alu 17 112 -5 9 1512 342 261 0 0 chr9 121550185 121550273 -2525899 - B1F SINE Alu -57 92 5 9 1512 21 36 0 0 chr9 121551741 121551769 -2524403 + GC_rich Low_complexity Low_complexity 1 28 0 9 1512 252 86 0 0 chr9 121554165 121554200 -2521972 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1512 215 211 276 0 chr9 121555584 121555660 -2520512 + B1F SINE Alu 1 97 -52 1 1512 238 257 24 103 chr9 121555717 121555843 -2520329 + B3A SINE B2 73 188 -10 1 1512 322 275 64 9 chr9 121556722 121556832 -2519340 + PB1D10 SINE Alu 1 116 -1 1 1512 396 145 0 0 chr9 121556873 121556935 -2519237 + B1F1 SINE Alu 3 64 -85 1 1512 486 266 9 0 chr9 121557037 121557146 -2519026 - B4A SINE B4 -182 110 1 1 1512 191 316 68 75 chr9 121557165 121557312 -2518860 + L2 LINE L2 1213 1358 -2061 1 1512 447 19 0 0 chr9 121557784 121557836 -2518336 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1 1512 1137 30 0 29 chr9 121557839 121557978 -2518194 - B1_Mus1 SINE Alu -12 136 2 1 1512 1658 47 0 0 chr9 121558998 121559191 -2516981 + B2_Mm1a SINE B2 1 193 0 1 1512 681 73 9 18 chr9 121559585 121559663 -2516509 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 1 1512 731 75 19 0 chr9 121559663 121559769 -2516403 + (GGGAA)n Simple_repeat Simple_repeat 2 109 0 1 1512 681 73 9 18 chr9 121559769 121559801 -2516371 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 1 1512 859 314 5 0 chr9 121559803 121560007 -2516165 + B4 SINE B4 84 288 -4 1 1512 314 138 0 17 chr9 121560011 121560070 -2516102 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1512 275 191 16 0 chr9 121560072 121560135 -2516037 + (TATG)n Simple_repeat Simple_repeat 3 66 0 1 1512 432 0 0 0 chr9 121564981 121565029 -2511143 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1512 203 230 20 147 chr9 121565203 121565305 -2510867 + MIR SINE MIR 82 170 -92 1 1512 525 353 59 36 chr9 121566301 121566607 -2509565 - MER20B DNA MER1_type -151 632 320 1 1512 752 230 138 25 chr9 121566780 121566976 -2509196 + ID_B1 SINE B4 6 223 -1 1 1512 392 295 30 30 chr9 121568335 121568468 -2507704 + B4A SINE B4 5 137 -155 1 1512 755 75 9 0 chr9 121569567 121569674 -2506498 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 1512 441 220 10 90 chr9 121569674 121569774 -2506398 + PB1D10 SINE Alu 20 111 -6 1 1512 233 98 24 0 chr9 121570689 121570730 -2505442 + (CCCCCT)n Simple_repeat Simple_repeat 4 45 0 1 1512 913 272 147 12 chr9 121571165 121571492 -2504680 - MTEa LTR MaLR -8 371 1 1 1512 1828 204 60 0 chr9 121572130 121572512 -2503660 - MTD LTR MaLR -14 405 1 1 1512 239 355 14 21 chr9 121572808 121572949 -2503223 + (TGGG)n Simple_repeat Simple_repeat 2 141 0 1 1512 487 202 176 0 chr9 121573001 121573120 -2503052 + B1F SINE Alu 2 141 -8 1 1512 608 283 15 79 chr9 121573179 121573382 -2502790 + RMER30 DNA MER1_type 13 202 0 1 1512 1378 263 59 14 chr9 121575564 121575919 -2500253 - MTEa LTR MaLR -8 371 1 1 1512 572 228 73 39 chr9 121581965 121582143 -2494029 - MER96B DNA hAT -225 192 9 1 1512 810 190 76 160 chr9 121582545 121582833 -2493339 + MTD LTR MaLR 20 283 -136 1 1512 895 307 49 49 chr9 121583627 121583720 -2492452 - ORR1D2 LTR MaLR -3 367 271 1 1512 806 215 24 91 chr9 121583720 121583930 -2492242 + B3A SINE B2 1 196 -2 1 1512 1519 54 11 0 chr9 121583937 121584123 -2492049 + B2_Mm2 SINE B2 1 188 -7 1 1512 895 307 49 49 chr9 121584123 121584387 -2491785 - ORR1D2 LTR MaLR -100 270 2 1 1512 1214 34 0 26 chr9 121584589 121584741 -2491431 + B1_Mus1 SINE Alu 1 148 0 1 1512 920 189 56 26 chr9 121585103 121585298 -2490874 - ID_B1 SINE B4 -17 207 7 1 1512 327 289 21 0 chr9 121585326 121585423 -2490749 - PB1D10 SINE Alu -6 111 13 1 1512 965 246 115 36 chr9 121585797 121586075 -2490097 - MTEa LTR MaLR -78 301 2 1 1512 312 231 83 6 chr9 121586084 121586241 -2489931 + (CTCA)n Simple_repeat Simple_repeat 2 170 0 1 1512 911 194 72 10 chr9 121587492 121587700 -2488472 - ID_B1 SINE B4 -2 222 2 1 1512 909 221 87 0 chr9 121587960 121588155 -2488017 - B3 SINE B2 -4 212 1 1 1512 927 122 30 0 chr9 121589744 121589875 -2486297 + B1_Mur4 SINE Alu 1 135 -15 1 1512 183 42 0 0 chr9 121589880 121589904 -2486268 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1512 1118 122 0 6 chr9 121589910 121590091 -2486081 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1512 1137 128 0 0 chr9 121590120 121590300 -2485872 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1512 29 28 0 0 chr9 121592151 121592187 -2483985 + AT_rich Low_complexity Low_complexity 1 36 0 1 1512 208 288 0 0 chr9 121595382 121595455 -2480717 + A-rich Low_complexity Low_complexity 2 74 0 1 1512 915 169 0 0 chr9 121595459 121595636 -2480536 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1512 891 183 0 0 chr9 121595653 121595833 -2480339 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1512 833 179 0 16 chr9 121595852 121596034 -2480138 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1512 28 0 0 0 chr9 121596065 121596093 -2480079 + AT_rich Low_complexity Low_complexity 1 28 0 1 1512 24 32 0 0 chr9 121596210 121596241 -2479931 + AT_rich Low_complexity Low_complexity 1 31 0 1 1512 554 230 35 28 chr9 121596595 121596738 -2479434 - ID_B1 SINE B4 -1 223 80 1 1512 456 229 56 78 chr9 121596764 121596796 -2479376 + ID SINE ID 60 88 -136 1 1512 496 231 26 139 chr9 121596796 121596947 -2479225 + B1_Mus1 SINE Alu 2 135 -13 1 1512 234 207 69 0 chr9 121596950 121597008 -2479164 + B1F SINE Alu 67 128 -21 1 1512 233 189 75 0 chr9 121597000 121597053 -2479119 + B1_Mus2 SINE Alu 65 121 -26 1 1512 390 109 53 84 chr9 121597025 121597139 -2479033 + B1_Mus2 SINE Alu 64 147 0 1 1512 260 275 12 36 chr9 121597204 121597287 -2478885 + ID4_ SINE ID 2 82 -1 1 1512 28 48 0 0 chr9 121597648 121597690 -2478482 + AT_rich Low_complexity Low_complexity 1 42 0 1 1512 558 80 19 29 chr9 121598225 121598328 -2477844 + (CA)n Simple_repeat Simple_repeat 2 103 0 1 1512 363 231 102 8 chr9 121598871 121598989 -2477183 - RSINE1 SINE B4 -36 129 1 1 1512 1437 246 41 29 chr9 121599853 121600267 -2475905 + MTD LTR MaLR 1 419 0 1 1512 444 229 114 69 chr9 121600341 121600472 -2475700 - ID_B1 SINE B4 -4 220 84 1 1512 824 228 4 152 chr9 121600968 121601232 -2474940 - URR1B DNA MER1_type 0 225 1 1 1512 253 314 67 0 chr9 121601364 121601469 -2474703 - MER5C DNA MER1_type 0 313 202 1 1512 364 196 74 32 chr9 121602275 121602370 -2473802 - PB1D10 SINE Alu 0 117 19 1 1512 352 253 10 50 chr9 121602329 121602429 -2473743 + B3 SINE B2 120 215 -1 1 1512 327 260 0 0 chr9 121602457 121602534 -2473638 + RSINE1 SINE B4 5 81 -84 1 1512 875 172 8 0 chr9 121603071 121603341 -2472831 + GA-rich Low_complexity Low_complexity 1 272 0 1 1512 950 168 0 4 chr9 121603369 121603605 -2472567 + GA-rich Low_complexity Low_complexity 1 234 0 1 1512 204 202 106 68 chr9 121603956 121604061 -2472111 + MIRb SINE MIR 29 147 -129 1 1512 4517 16 0 0 chr9 121605150 121605643 -2470529 + MT2_Mm LTR ERVL 1 493 0 1 1512 428 209 17 6 chr9 121606326 121606499 -2469673 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1512 183 129 0 0 chr9 121606561 121606592 -2469580 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1512 207 0 0 0 chr9 121607185 121607208 -2468964 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1512 1163 82 0 0 chr9 121607211 121607357 -2468815 - B1_Mus1 SINE Alu 0 148 3 1 1512 344 304 5 1 chr9 121608188 121608285 -2467887 + PB1D10 SINE Alu 28 127 -21 1 1512 279 307 186 32 chr9 121608344 121608596 -2467576 + L1MDa LINE L1 66 356 -6277 1 1512 846 208 42 37 chr9 121608613 121608828 -2467344 + B3 SINE B2 1 216 0 1 1512 659 138 37 0 chr9 121608859 121608968 -2467204 + B1_Mur3 SINE Alu 34 146 -3 1 1512 265 232 0 0 chr9 121609184 121609240 -2466932 + B1F SINE Alu 87 142 -7 1 1512 226 238 0 0 chr9 121609269 121609311 -2466861 + ID4_ SINE ID 42 83 0 1 1512 314 115 0 0 chr9 121609851 121609903 -2466269 + B1_Mur3 SINE Alu 89 140 -9 1 1512 243 0 0 0 chr9 121609903 121609930 -2466242 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1512 223 161 32 16 chr9 121610211 121610274 -2465898 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 1 1512 1138 68 0 39 chr9 121610292 121610445 -2465727 - B1_Mus2 SINE Alu 0 147 1 1 1512 818 209 0 0 chr9 121610445 121610583 -2465589 - B1_Mur4 SINE Alu -11 139 1 1 1512 622 323 62 12 chr9 121612134 121612391 -2463781 + MER2 DNA MER2_type 9 278 -67 1 1512 429 304 0 36 chr9 121612777 121612917 -2463255 + ID_B1 SINE B4 86 220 -4 1 1512 494 198 123 8 chr9 121612954 121613076 -2463096 + B1_Mur1 SINE Alu 14 149 0 1 1512 300 173 19 0 chr9 121613141 121613193 -2462979 - B1_Mus2 SINE Alu -93 54 2 1 1512 341 250 26 77 chr9 121613488 121613605 -2462567 + PB1D10 SINE Alu 1 111 -6 1 1512 21 0 0 0 chr9 121613875 121613896 -2462276 + GC_rich Low_complexity Low_complexity 1 21 0 1 1512 276 272 155 48 chr9 121614959 121615057 -2461115 + MLT2B3 LTR ERVL 267 383 -171 1 1512 769 241 36 31 chr9 121615057 121615280 -2460892 - ID_B1 SINE B4 0 224 1 1 1512 276 272 155 48 chr9 121615280 121615432 -2460740 + MLT2B3 LTR ERVL 384 544 -10 1 1512 236 333 23 11 chr9 121615589 121615677 -2460495 + MLT1F LTR MaLR 10 98 -450 1 1512 2442 62 65 0 chr9 121615814 121616121 -2460051 + ORR1A2 LTR MaLR 1 327 0 1 1512 368 284 59 25 chr9 121616153 121616272 -2459900 + B1F SINE Alu 17 139 -10 1 1512 183 42 0 0 chr9 121616272 121616296 -2459876 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1512 795 259 24 28 chr9 121616301 121616512 -2459660 + B3 SINE B2 2 211 -5 1 1512 297 254 148 66 chr9 121616624 121616746 -2459426 + ID_B1 SINE B4 28 159 -65 1 1512 705 217 7 34 chr9 121618914 121619103 -2457069 - B3A SINE B2 -21 195 15 1 1512 223 211 0 0 chr9 121619916 121619968 -2456204 + PB1D10 SINE Alu 9 60 -57 1 1512 649 199 24 8 chr9 121620718 121620845 -2455327 - B1_Mus2 SINE Alu -17 130 2 1 1512 239 259 0 36 chr9 121620992 121621048 -2455124 + ID4_ SINE ID 28 81 -2 1 1512 220 294 43 29 chr9 121621048 121621059 -2455113 + ID_B1 SINE B4 27 94 -130 2 1512 331 290 209 42 chr9 121621129 121621464 -2454708 - L2 LINE L2 -383 3036 2646 2 1512 275 186 51 0 chr9 121621507 121621566 -2454606 + PB1D9 SINE Alu 40 101 -19 2 1512 21 0 0 0 chr9 121621905 121621926 -2454246 + AT_rich Low_complexity Low_complexity 1 21 0 2 1512 550 257 88 0 chr9 121622518 121622689 -2453483 - MTD LTR MaLR -14 405 220 2 1512 1258 236 75 49 chr9 121622695 121623013 -2453159 - MT2A LTR ERVL -134 399 74 2 1512 1116 62 0 14 chr9 121623013 121623161 -2453011 + B1_Mus2 SINE Alu 2 147 0 2 1512 1258 236 75 49 chr9 121623161 121623230 -2452942 - MT2A LTR ERVL -460 73 2 2 1512 1445 78 16 0 chr9 121623293 121623484 -2452688 + B2_Mm2 SINE B2 1 194 -1 2 1512 988 89 56 12 chr9 121623488 121623648 -2452524 + B2_Mm1t SINE B2 1 167 -26 2 1512 314 130 0 18 chr9 121623718 121623773 -2452399 + B2_Mm2 SINE B2 47 100 -95 2 1512 455 17 34 0 chr9 121623787 121623846 -2452326 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 2 1512 370 212 57 33 chr9 121623869 121623991 -2452181 + L1MB3 LINE L1 6045 6169 -14 2 1512 239 164 262 0 chr9 121624282 121624343 -2451829 - ID4 SINE ID -3 80 4 2 1512 2302 146 123 18 chr9 121624445 121624900 -2451272 + Lx9 LINE L1 6997 7499 -145 2 1512 385 259 126 74 chr9 121625323 121625468 -2450704 - B3A SINE B2 -7 209 56 2 1512 2810 41 3 47 chr9 121625468 121625593 -2450579 + ORR1A0 LTR MaLR 1 125 -221 2 1512 1177 47 0 20 chr9 121625593 121625731 -2450441 + B1_Mus1 SINE Alu 1 138 -10 2 1512 216 0 0 0 chr9 121625731 121625755 -2450417 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1512 1177 47 0 20 chr9 121625755 121625767 -2450405 + B1_Mus1 SINE Alu 139 148 0 2 1512 2810 41 3 47 chr9 121625767 121626003 -2450169 + ORR1A0 LTR MaLR 126 346 0 2 1512 385 269 57 32 chr9 121626003 121626032 -2450140 - B3A SINE B2 -143 55 27 2 1512 1173 226 198 31 chr9 121626062 121626541 -2449631 - RMER4B LTR ERVK -9 576 17 2 1512 506 234 46 53 chr9 121626546 121626677 -2449495 - B1_Mur3 SINE Alu -15 134 5 2 1512 1958 151 148 37 chr9 121626730 121627136 -2449036 - RLTR11B LTR ERVK -2 451 1 2 1512 1418 71 11 0 chr9 121627169 121627352 -2448820 - B2_Mm1a SINE B2 -8 185 1 2 1512 533 175 93 8 chr9 121627376 121627510 -2448662 - B1_Mur1 SINE Alu 0 150 5 2 1512 697 211 48 48 chr9 121627541 121627730 -2448442 - B3 SINE B2 -25 191 3 2 1512 244 254 94 0 chr9 121627736 121627759 -2448413 - PB1D10 SINE Alu 0 120 65 2 1512 278 211 0 0 chr9 121627759 121627816 -2448356 - ID_B1 SINE B4 -56 168 112 2 1512 244 254 94 0 chr9 121627816 121627837 -2448335 - PB1D10 SINE Alu 0 64 8 2 1512 180 111 0 0 chr9 121628450 121628477 -2447695 + (CGGG)n Simple_repeat Simple_repeat 2 28 0 2 1512 35 0 0 0 chr9 121628511 121628546 -2447626 + GC_rich Low_complexity Low_complexity 1 35 0 2 1512 248 203 0 45 chr9 121628691 121628758 -2447414 + (CGGGG)n Simple_repeat Simple_repeat 2 65 0 2 1512 328 202 162 57 chr9 121629890 121629995 -2446177 - PB1D9 SINE Alu 0 120 5 2 1512 331 267 28 83 chr9 121630370 121630535 -2445637 - L1MD LINE L1 -2642 3504 3348 2 1512 216 0 0 0 chr9 121630647 121630671 -2445501 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1512 1159 37 0 0 chr9 121630671 121630807 -2445365 - B1_Mus2 SINE Alu -11 136 1 2 1512 225 65 0 0 chr9 121631240 121631271 -2444901 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1512 569 172 253 19 chr9 121631319 121631473 -2444699 - B3 SINE B2 0 216 27 2 1512 1248 34 0 0 chr9 121631483 121631629 -2444543 - B1_Mus2 SINE Alu 0 147 2 2 1512 227 175 0 0 chr9 121631630 121631670 -2444502 - B3 SINE B2 -176 40 1 2 1512 248 208 198 0 chr9 121631725 121631831 -2444341 - L1MD LINE L1 -3167 2979 2853 2 1512 627 185 59 0 chr9 121632139 121632258 -2443914 - B1_Mur2 SINE Alu 0 149 24 2 1512 517 267 22 37 chr9 121633379 121633515 -2442657 - RSINE1 SINE B4 -30 135 2 2 1512 1273 34 0 0 chr9 121633545 121633692 -2442480 + B1_Mm SINE Alu 1 147 0 2 1512 25 0 0 0 chr9 121633692 121633717 -2442455 + AT_rich Low_complexity Low_complexity 1 25 0 2 1512 297 281 41 10 chr9 121633732 121633829 -2442343 + B1F SINE Alu 43 142 -7 2 1512 1106 37 66 0 chr9 121634303 121634439 -2441733 + B1_Mm SINE Alu 1 145 -2 2 1512 192 40 0 0 chr9 121634440 121634465 -2441707 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 2 1512 516 209 49 35 chr9 121634570 121634714 -2441458 - B1_Mus2 SINE Alu 0 147 2 2 1513 601 283 14 0 chr9 121634819 121634964 -2441208 + RSINE1 SINE B4 1 147 -18 2 1513 248 246 183 9 chr9 121635138 121635253 -2440919 + Charlie1a DNA MER1_type 1320 1454 -1 2 1513 1303 101 16 16 chr9 121635535 121635727 -2440445 + B2_Mm2 SINE B2 1 192 -3 2 1513 1007 52 0 7 chr9 121635870 121636007 -2440165 + B1_Mus2 SINE Alu 12 147 0 2 1513 1264 87 55 0 chr9 121636036 121636219 -2439953 + B2_Mm2 SINE B2 2 194 -1 2 1513 3292 57 19 12 chr9 121636609 121637036 -2439136 + L1_Mus2 LINE L1 6136 6565 -1 2 1513 405 302 102 107 chr9 121638260 121638475 -2437697 + ID_B1 SINE B4 2 215 -9 2 1513 709 228 0 54 chr9 121638487 121638654 -2437518 + RSINE1 SINE B4 3 160 -5 2 1513 22 0 0 0 chr9 121638717 121638739 -2437433 + AT_rich Low_complexity Low_complexity 1 22 0 2 1513 180 0 0 0 chr9 121638821 121638841 -2437331 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 2 1513 449 202 24 0 chr9 121639757 121639841 -2436331 - 5S rRNA rRNA -31 90 5 2 1513 25 51 0 0 chr9 121639992 121640031 -2436141 + AT_rich Low_complexity Low_complexity 1 39 0 2 1513 731 174 57 14 chr9 121641038 121641178 -2434994 + B1_Mur3 SINE Alu 3 148 -1 2 1513 513 242 22 29 chr9 121641480 121641616 -2434556 + RSINE1 SINE B4 3 137 -28 2 1513 25 31 0 0 chr9 121641636 121641668 -2434504 + AT_rich Low_complexity Low_complexity 1 32 0 2 1513 213 39 0 0 chr9 121643532 121643558 -2432614 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1513 265 304 25 0 chr9 121643932 121644011 -2432161 + ID4 SINE ID 2 82 -1 2 1513 315 231 78 61 chr9 121644449 121644564 -2431608 + PB1D10 SINE Alu 1 117 0 2 1513 270 0 0 0 chr9 121644659 121644689 -2431483 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1513 499 291 98 45 chr9 121644714 121644959 -2431213 - B4A SINE B4 -22 270 13 2 1513 320 208 303 8 chr9 121645201 121645335 -2430837 - B3 SINE B2 -9 207 35 2 1513 702 163 104 40 chr9 121645667 121645840 -2430332 - B3 SINE B2 0 216 33 2 1513 183 67 21 62 chr9 121646097 121646145 -2430027 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1513 35 24 0 0 chr9 121646313 121646355 -2429817 + AT_rich Low_complexity Low_complexity 1 42 0 2 1513 243 88 0 0 chr9 121647555 121647589 -2428583 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1513 189 373 0 23 chr9 121650976 121651105 -2425067 + L2 LINE L2 2659 2784 -635 2 1513 215 342 26 0 chr9 121651111 121651187 -2424985 + L2 LINE L2 2731 2808 -611 2 1513 27 0 0 0 chr9 121651647 121651674 -2424498 + AT_rich Low_complexity Low_complexity 1 27 0 2 1513 689 173 263 18 chr9 121652276 121652447 -2423725 - B3 SINE B2 -3 213 1 2 1513 269 311 165 18 chr9 121652519 121652689 -2423483 - Lx8 LINE L1 -60 7413 7219 2 1513 368 273 126 28 chr9 121652701 121652844 -2423328 + RSINE1 SINE B4 3 159 -6 2 1513 294 336 18 45 chr9 121653762 121653874 -2422298 - PB1D10 SINE Alu -7 110 2 2 1513 290 221 204 31 chr9 121654456 121654554 -2421618 - PB1D10 SINE Alu -2 115 1 2 1513 361 234 43 78 chr9 121656104 121656220 -2419952 + PB1D10 SINE Alu 3 114 -3 2 1513 519 262 228 13 chr9 121656220 121656452 -2419720 + B4 SINE B4 1 282 -10 2 1513 299 214 129 0 chr9 121656534 121656604 -2419568 + ID4 SINE ID 3 81 -2 2 1513 992 155 193 0 chr9 121656784 121656965 -2419207 + B3 SINE B2 1 216 0 2 1513 189 186 70 0 chr9 121660966 121661009 -2415163 + L4 LINE RTE 1316 1361 -668 2 1513 238 254 14 29 chr9 121664809 121664878 -2411294 + tRNA-Ala-GCY_ tRNA tRNA 6 73 -2 2 1513 519 141 68 172 chr9 121666333 121666496 -2409676 + B1_Mm SINE Alu 2 147 0 2 1513 189 0 0 0 chr9 121666496 121666517 -2409655 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1513 189 0 0 0 chr9 121666518 121666539 -2409633 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 2 1513 46 101 0 0 chr9 121669103 121669261 -2406911 + GC_rich Low_complexity Low_complexity 1 158 0 2 1513 190 176 59 0 chr9 121669756 121669807 -2406365 + MIR SINE MIR 76 129 -79 2 1513 401 154 9 37 chr9 121672638 121672746 -2403426 + GA-rich Low_complexity Low_complexity 1 105 0 2 1513 322 390 0 0 chr9 121673690 121673854 -2402318 + (CA)n Simple_repeat Simple_repeat 1 164 0 2 1513 186 239 11 21 chr9 121673866 121673960 -2402212 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 1513 266 397 69 6 chr9 121674835 121675010 -2401162 + MER91A DNA Tip100 11 196 0 2 1513 260 286 49 39 chr9 121675787 121675889 -2400283 + B4A SINE B4 87 189 -103 2 1513 1136 95 0 0 chr9 121675953 121676100 -2400072 + B1_Mus1 SINE Alu 1 147 -1 2 1513 21 36 0 0 chr9 121676105 121676133 -2400039 + AT_rich Low_complexity Low_complexity 1 28 0 2 1513 252 343 79 14 chr9 121676133 121676272 -2399900 + B1F2 SINE Alu 1 148 -1 2 1513 204 152 0 21 chr9 121678549 121678596 -2397576 + A-rich Low_complexity Low_complexity 2 47 0 2 1513 364 281 76 30 chr9 121679922 121680054 -2396118 + ID_B1 SINE B4 80 217 -7 2 1513 433 222 86 77 chr9 121680730 121680847 -2395325 + PB1 SINE Alu 3 124 -3 2 1513 509 318 0 0 chr9 121681136 121681262 -2394910 - ID_B1 SINE B4 -56 168 43 2 1513 261 0 0 0 chr9 121682274 121682303 -2393869 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1513 225 0 0 0 chr9 121682303 121682327 -2393845 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 1513 252 0 0 0 chr9 121682397 121682425 -2393747 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1513 396 0 0 0 chr9 121682425 121682468 -2393704 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1513 216 0 0 0 chr9 121682535 121682559 -2393613 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1513 459 283 107 5 chr9 121682897 121683103 -2393069 - L1MB3 LINE L1 -154 6029 5803 3 1513 1055 88 7 7 chr9 121683103 121683241 -2392931 + B1_Mus2 SINE Alu 1 138 -9 3 1513 398 20 20 0 chr9 121683241 121683292 -2392880 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 1513 245 206 11 0 chr9 121683312 121683404 -2392768 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1513 281 244 174 0 chr9 121683441 121683527 -2392645 - RSINE1 SINE B4 -57 108 8 3 1513 517 124 10 78 chr9 121683608 121683801 -2392371 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 3 1513 933 113 0 0 chr9 121683801 121683978 -2392194 + (TC)n Simple_repeat Simple_repeat 2 178 0 3 1513 940 134 7 0 chr9 121684160 121684302 -2391870 - B1_Mus1 SINE Alu -5 143 1 3 1513 424 284 45 20 chr9 121684323 121684521 -2391651 - L1MDb LINE L1 -5178 1231 1029 3 1513 453 323 57 4 chr9 121684764 121685028 -2391144 - L1MDb LINE L1 -5964 445 168 3 1513 226 257 40 26 chr9 121686250 121686326 -2389846 - MIR3 SINE MIR -22 186 110 3 1513 304 145 148 62 chr9 121690662 121690824 -2385348 + (GGTTG)n Simple_repeat Simple_repeat 2 177 0 3 1513 322 163 15 148 chr9 121690854 121691056 -2385116 + (GGTTG)n Simple_repeat Simple_repeat 3 177 0 3 1513 207 0 0 0 chr9 121692573 121692596 -2383576 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1513 197 294 192 19 chr9 121694538 121694642 -2381530 + L2a LINE L2 2292 2413 -1006 3 1513 915 223 53 24 chr9 121694924 121695131 -2381041 + B3 SINE B2 1 213 -3 3 1513 209 385 97 43 chr9 121695299 121695598 -2380574 + L2a LINE L2 3079 3393 -33 3 1513 195 129 0 0 chr9 121699244 121699275 -2376897 + (CCA)n Simple_repeat Simple_repeat 1 31 0 3 1513 2214 163 172 10 chr9 121702896 121703391 -2372781 + RMER15 LTR ERVL 1 575 0 3 1513 5289 143 24 17 chr9 121704547 121705471 -2370701 + RMER17B LTR ERVK 1 930 -28 3 1513 211 324 34 94 chr9 121705553 121705728 -2370444 - MIR SINE MIR -81 181 20 3 1513 966 101 13 6 chr9 121707526 121707685 -2368487 + (TA)n Simple_repeat Simple_repeat 2 161 0 3 1513 704 261 51 14 chr9 121707688 121707902 -2368270 - ID_B1 SINE B4 -2 222 1 3 1513 229 258 190 40 chr9 121708766 121708895 -2367277 + MIR3 SINE MIR 40 185 -91 3 1513 275 249 115 218 chr9 121710188 121710440 -2365732 - MLT1E2 LTR MaLR 0 627 402 3 1513 232 152 21 21 chr9 121711818 121711865 -2364307 + Lx5 LINE L1 6720 6766 -284 3 1513 528 158 0 0 chr9 121712459 121712615 -2363557 + (TG)n Simple_repeat Simple_repeat 1 156 0 3 1513 360 43 0 0 chr9 121712615 121712660 -2363512 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1513 290 294 84 31 chr9 121712764 121712989 -2363183 + L1M5 LINE L1 5260 5496 -666 3 1513 592 292 35 44 chr9 121713128 121713354 -2362818 + ID_B1 SINE B4 1 224 0 3 1513 454 183 8 8 chr9 121713827 121713948 -2362224 + (TG)n Simple_repeat Simple_repeat 1 121 0 3 1513 1081 43 7 0 chr9 121713996 121714136 -2362036 - B1_Mm SINE Alu 0 147 7 3 1513 547 178 15 0 chr9 121714146 121714281 -2361891 + (TG)n Simple_repeat Simple_repeat 2 138 0 3 1513 295 261 91 85 chr9 121714284 121714460 -2361712 - B4 SINE B4 0 292 116 3 1513 292 236 56 0 chr9 121715101 121715173 -2360999 + PB1D10 SINE Alu 42 117 0 3 1513 789 180 0 0 chr9 121715349 121715521 -2360651 + (CA)n Simple_repeat Simple_repeat 1 172 0 3 1513 21 0 0 0 chr9 121716174 121716195 -2359977 + GC_rich Low_complexity Low_complexity 1 21 0 3 1513 708 88 52 17 chr9 121718616 121718790 -2357382 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1513 286 146 48 12 chr9 121718809 121718892 -2357280 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 1513 743 153 8 8 chr9 121718979 121719098 -2357074 + PB1D9 SINE Alu 2 120 0 3 1513 396 0 0 0 chr9 121719643 121719687 -2356485 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1513 2701 282 105 37 chr9 121720624 121721758 -2354414 + Lx8 LINE L1 6096 7324 -149 3 1513 423 52 0 0 chr9 121721758 121721816 -2354356 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1513 2701 282 105 37 chr9 121721816 121721962 -2354210 + Lx8 LINE L1 7325 7463 -10 3 1513 367 355 14 21 chr9 121721994 121722135 -2354037 + MLT1J LTR MaLR 245 384 -128 3 1513 188 197 80 53 chr9 121722737 121722812 -2353360 + L2a LINE L2 3046 3122 -304 3 1513 192 125 0 0 chr9 121723668 121723700 -2352472 + (GGATG)n Simple_repeat Simple_repeat 5 36 0 3 1513 277 237 371 0 chr9 121723736 121723833 -2352339 + RSINE1 SINE B4 1 133 -32 3 1513 689 102 0 9 chr9 121723833 121723942 -2352230 + (CA)n Simple_repeat Simple_repeat 1 108 0 3 1513 198 265 83 12 chr9 121724242 121724326 -2351846 - L2a LINE L2 0 3426 3337 3 1513 743 264 170 19 chr9 121725056 121725373 -2350799 + MTEa LTR MaLR 1 365 -14 3 1513 1180 68 0 14 chr9 121725381 121725529 -2350643 - B1_Mus2 SINE Alu 0 147 2 3 1513 206 32 32 0 chr9 121726299 121726330 -2349842 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1513 1204 68 0 0 chr9 121726330 121726476 -2349696 - B1_Mus1 SINE Alu -1 147 2 3 1513 458 304 89 42 chr9 121726600 121727072 -2349100 - L1MA4A LINE L1 -184 5996 5479 3 1513 392 304 88 0 chr9 121727299 121727516 -2348656 - L1MA4A LINE L1 -772 5371 5136 3 1513 245 186 0 23 chr9 121727719 121727763 -2348409 - 5S rRNA rRNA -70 51 9 3 1513 462 272 56 86 chr9 121728083 121728280 -2347892 - MIR SINE MIR -58 204 14 3 1513 1310 84 67 0 chr9 121730542 121730720 -2345452 + B2_Mm2 SINE B2 2 191 -4 3 1513 669 158 158 0 chr9 121730727 121730847 -2345325 + B1_Mur3 SINE Alu 1 139 -10 3 1513 675 243 74 56 chr9 121733267 121733498 -2342674 + B4 SINE B4 40 274 -18 3 1513 1002 62 0 0 chr9 121733536 121733666 -2342506 + (CA)n Simple_repeat Simple_repeat 2 131 0 3 1513 1869 160 98 21 chr9 121734438 121734662 -2341510 + ORR1B2 LTR MaLR 4 254 -113 3 1513 1872 144 61 104 chr9 121734662 121735074 -2341098 - ORR1B1 LTR MaLR 0 394 1 3 1513 1869 160 98 21 chr9 121735074 121735187 -2340985 + ORR1B2 LTR MaLR 255 367 0 3 1513 191 225 0 0 chr9 121735971 121736011 -2340161 - MIR SINE MIR -11 251 212 3 1513 484 184 101 42 chr9 121736608 121736727 -2339445 + ID_B1 SINE B4 95 220 -4 3 1513 212 311 28 19 chr9 121737031 121737139 -2339033 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 3 1513 692 197 209 33 chr9 121737143 121737353 -2338819 - B4 SINE B4 -13 279 33 3 1513 920 109 15 0 chr9 121737920 121738057 -2338115 + B1_Mus2 SINE Alu 9 147 0 3 1513 342 365 29 0 chr9 121738608 121738745 -2337427 + ID_B1 SINE B4 80 220 -4 3 1513 184 133 21 43 chr9 121738966 121739013 -2337159 + G-rich Low_complexity Low_complexity 4 49 0 3 1513 226 286 0 0 chr9 121740404 121740460 -2335712 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1513 351 286 75 19 chr9 121740466 121740573 -2335599 - B4 SINE B4 -2 290 178 3 1513 233 204 0 0 chr9 121740647 121740691 -2335481 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1513 239 272 210 0 chr9 121740695 121740776 -2335396 - B4 SINE B4 -107 185 88 3 1513 5253 155 25 23 chr9 121741212 121742118 -2334054 + RMER13B LTR ERVK 1 908 0 3 1513 442 318 8 0 chr9 121743237 121743366 -2332806 + MER5B DNA MER1_type 1 130 -48 3 1513 275 266 73 0 chr9 121743382 121743491 -2332681 + PB1D10 SINE Alu 1 117 0 3 1513 7815 77 10 9 chr9 121743735 121744757 -2331415 + RLTR13D5 LTR ERVK 1 1023 0 3 1513 843 255 161 30 chr9 121746928 121747263 -2328909 - MTEb LTR MaLR 0 379 1 3 1513 513 246 73 15 chr9 121747404 121747540 -2328632 - B1F2 SINE Alu 0 149 6 3 1513 186 269 212 25 chr9 121747553 121747633 -2328539 + L2a LINE L2 3331 3425 -1 3 1513 370 253 43 11 chr9 121747775 121747867 -2328305 + B1F SINE Alu 53 147 -2 3 1513 644 199 45 15 chr9 121748810 121748943 -2327229 - ID_B1 SINE B4 0 224 88 3 1513 410 299 7 55 chr9 121749241 121749386 -2326786 + B4A SINE B4 155 292 0 3 1513 216 0 0 0 chr9 121749524 121749548 -2326624 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1513 258 116 0 0 chr9 121749854 121749897 -2326275 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1513 198 0 0 0 chr9 121749898 121749920 -2326252 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1513 277 200 0 0 chr9 121749920 121749965 -2326207 - B3A SINE B2 -50 148 104 3 1513 2261 108 13 0 chr9 121749966 121750281 -2325891 + ORR1A2 LTR MaLR 1 319 -8 3 1513 273 231 242 0 chr9 121750275 121750366 -2325806 - B3 SINE B2 -100 116 4 3 1513 528 202 45 18 chr9 121750888 121750999 -2325173 + B1F SINE Alu 23 136 -13 3 1513 291 240 12 107 chr9 121751014 121751098 -2325074 + ID4_ SINE ID 2 77 -6 3 1513 647 309 10 0 chr9 121751142 121751336 -2324836 - B3 SINE B2 -17 199 4 3 1513 917 145 20 14 chr9 121751619 121751766 -2324406 - B1_Mur4 SINE Alu 0 150 3 3 1513 363 226 287 0 chr9 121751819 121751934 -2324238 - RSINE1 SINE B4 -15 150 3 3 1513 690 141 99 0 chr9 121752192 121752334 -2323838 - B2_Mm2 SINE B2 -4 191 36 3 1513 1863 213 44 12 chr9 121752334 121752413 -2323759 - Lx9 LINE L1 -43 7601 7518 3 1513 477 84 0 0 chr9 121752413 121752484 -2323688 + (TGG)n Simple_repeat Simple_repeat 1 71 0 3 1513 1863 213 44 12 chr9 121752484 121752832 -2323340 - Lx9 LINE L1 -127 7517 7160 3 1513 969 155 191 11 chr9 121752942 121753125 -2323047 - B3 SINE B2 0 216 1 3 1513 332 296 215 45 chr9 121753162 121753458 -2322714 + MTE2b LTR MaLR 19 365 -14 3 1513 226 301 52 50 chr9 121753459 121753596 -2322576 - B4A SINE B4 -70 222 96 3 1513 762 141 148 0 chr9 121753596 121753724 -2322448 - B1_Mus1 SINE Alu -1 147 1 3 1513 220 338 77 73 chr9 121753724 121753806 -2322366 - B4 SINE B4 -197 95 2 3 1513 1016 195 24 39 chr9 121753976 121754184 -2321988 - B3 SINE B2 -7 209 5 3 1513 634 176 120 0 chr9 121754325 121754450 -2321722 - B1_Mus1 SINE Alu -8 140 1 4 1513 461 225 0 0 chr9 121754966 121755046 -2321126 - ID4 SINE ID 0 83 4 4 1513 299 248 147 37 chr9 121756015 121756124 -2320048 - MER2 DNA MER2_type -224 121 1 4 1513 226 163 20 0 chr9 121756131 121756180 -2319992 + A-rich Low_complexity Low_complexity 6 55 0 4 1513 443 287 66 0 chr9 121757178 121757300 -2318872 + RSINE1 SINE B4 3 132 -33 4 1513 660 228 145 6 chr9 121757321 121757480 -2318692 + B3A SINE B2 1 181 -17 4 1513 270 136 0 0 chr9 121758193 121758237 -2317935 + (CACG)n Simple_repeat Simple_repeat 4 47 0 4 1513 276 258 106 0 chr9 121759608 121759674 -2316498 - B1_Mus1 SINE Alu -45 103 31 4 1513 553 250 23 8 chr9 121759660 121759793 -2316379 - ID_B1 SINE B4 -8 216 82 4 1513 408 292 57 72 chr9 121759853 121760155 -2316017 + RSINE1 SINE B4 2 292 0 4 1513 1128 153 114 0 chr9 121760606 121760808 -2315364 - URR1B DNA MER1_type 0 225 1 4 1513 434 263 182 0 chr9 121761188 121761407 -2314765 + MER77 LTR ERVL 296 601 -6 4 1513 1590 192 87 78 chr9 121761812 121762258 -2313914 + RMER4A LTR ERVK 17 466 0 4 1513 240 264 69 0 chr9 121762437 121762509 -2313663 - B3A SINE B2 -16 182 106 4 1513 708 200 0 0 chr9 121762577 121762697 -2313475 - B1_Mm SINE Alu -21 126 7 4 1513 456 51 0 0 chr9 121762714 121762773 -2313399 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 4 1513 348 233 18 55 chr9 121763514 121763623 -2312549 + PB1D10 SINE Alu 3 107 -10 4 1513 608 231 17 25 chr9 121764014 121764134 -2312038 + PB1D9 SINE Alu 2 120 0 4 1513 377 262 0 0 chr9 121764198 121764278 -2311894 + ID4 SINE ID 4 83 0 4 1513 213 39 0 0 chr9 121764370 121764396 -2311776 + (AGGGGG)n Simple_repeat Simple_repeat 1 26 0 4 1513 456 250 65 0 chr9 121764591 121764699 -2311473 + PB1D10 SINE Alu 1 115 -2 4 1513 180 319 29 0 chr9 121764726 121764795 -2311377 - L2 LINE L2 -982 2437 2367 4 1513 326 239 54 43 chr9 121764937 121765029 -2311143 + PB1D10 SINE Alu 9 101 -16 4 1513 189 171 0 0 chr9 121765031 121765066 -2311106 + GA-rich Low_complexity Low_complexity 1 35 0 4 189 195 318 46 23 chr9 121765862 121765949 -2310223 - MER5B DNA MER1_type -75 103 15 4 1514 406 270 117 0 chr9 121767545 121767656 -2308516 - RSINE1 SINE B4 -40 125 2 4 1514 362 330 19 0 chr9 121767772 121767878 -2308294 - RSINE1 SINE B4 -4 161 54 4 1514 712 245 42 57 chr9 121767948 121768160 -2308012 + B3 SINE B2 3 211 -5 4 1514 803 170 22 0 chr9 121768166 121768301 -2307871 + B1_Mus1 SINE Alu 11 148 0 4 1514 891 173 200 6 chr9 121769311 121769491 -2306681 + B3 SINE B2 2 216 0 4 1514 266 0 29 0 chr9 121769928 121769962 -2306210 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1514 327 299 41 10 chr9 121769963 121770061 -2306111 - PB1D7 SINE Alu -16 104 4 4 1514 358 265 256 0 chr9 121770249 121770366 -2305806 + RSINE1 SINE B4 1 147 -18 4 1514 3523 15 5 0 chr9 121770366 121770758 -2305414 - MTA_Mm LTR MaLR -2 394 1 4 1514 2217 86 49 0 chr9 121770781 121771085 -2305087 - ORR1A2 LTR MaLR -8 319 1 4 1514 312 262 0 0 chr9 121771136 121771197 -2304975 + B3A SINE B2 9 69 -129 4 1514 485 333 67 17 chr9 121771198 121771378 -2304794 + B3A SINE B2 9 197 -1 4 1514 716 157 7 0 chr9 121771947 121772094 -2304078 + CT-rich Low_complexity Low_complexity 2 149 0 4 1514 294 288 79 14 chr9 121772193 121772307 -2303865 - B1_Mur1 SINE Alu -2 147 1 4 1514 265 316 71 0 chr9 121772351 121772449 -2303723 + B4A SINE B4 83 187 -105 4 1514 579 170 20 10 chr9 121772361 121772462 -2303710 + PB1D10 SINE Alu 9 110 -7 4 1514 472 315 0 45 chr9 121772609 121772636 -2303536 + B3A SINE B2 7 33 -165 4 1514 2028 158 36 19 chr9 121772636 121772997 -2303175 + ORR1B2 LTR MaLR 1 367 0 4 1514 472 315 0 45 chr9 121772997 121773102 -2303070 + B3A SINE B2 34 133 -65 4 1514 384 119 0 0 chr9 121773102 121773161 -2303011 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1514 314 295 109 55 chr9 121773161 121773192 -2302980 + B2_Mm2 SINE B2 143 180 -15 4 1514 373 292 239 0 chr9 121773267 121773380 -2302792 + RSINE1 SINE B4 3 142 -23 4 1514 424 0 36 0 chr9 121773389 121773445 -2302727 + (CATA)n Simple_repeat Simple_repeat 1 58 0 4 1514 211 225 0 0 chr9 121773446 121773486 -2302686 + GA-rich Low_complexity Low_complexity 4 43 0 4 1514 854 257 96 0 chr9 121773668 121773855 -2302317 + B3 SINE B2 1 205 -11 4 1514 325 301 66 29 chr9 121774392 121774409 -2301763 - ID_B1 SINE B4 -3 221 198 4 1514 624 62 0 0 chr9 121774409 121774490 -2301682 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 4 1514 400 318 19 0 chr9 121774496 121774603 -2301569 - B1F SINE Alu -36 113 5 4 1514 229 342 41 0 chr9 121775032 121775105 -2301067 - ID4_ SINE ID -6 77 2 4 1514 264 257 75 23 chr9 121775216 121775523 -2300649 - RMER17D LTR ERVK -349 540 218 4 1514 1176 44 7 0 chr9 121776327 121776464 -2299708 - B1_Mus1 SINE Alu -10 138 1 4 1514 368 252 147 9 chr9 121776502 121776618 -2299554 + ID_B1 SINE B4 86 217 -7 4 1514 949 226 24 19 chr9 121776623 121776835 -2299337 + ID_B1 SINE B4 1 213 -11 4 1514 308 196 0 0 chr9 121777753 121777804 -2298368 + B4A SINE B4 3 53 -239 4 1514 221 295 0 16 chr9 121777998 121778060 -2298112 + PB1D10 SINE Alu 21 81 -36 4 1514 374 257 8 76 chr9 121778109 121778227 -2297945 + RSINE1 SINE B4 45 154 -11 4 1514 271 338 0 13 chr9 121778323 121778398 -2297774 + ID4 SINE ID 7 80 -3 4 1514 411 272 69 19 chr9 121778968 121778997 -2297175 - ID_B1 SINE B4 -98 194 116 4 1514 445 217 12 12 chr9 121778997 121779081 -2297091 - PB1D10 SINE Alu -32 85 2 4 1514 411 272 69 19 chr9 121779081 121779100 -2297072 - ID_B1 SINE B4 -98 115 57 4 1514 254 169 0 33 chr9 121780496 121780557 -2295615 + CT-rich Low_complexity Low_complexity 3 61 0 4 1514 649 175 0 9 chr9 121780580 121780695 -2295477 - PB1D10 SINE Alu 0 117 4 4 1514 841 252 295 17 chr9 121781679 121781967 -2294205 - MTEa LTR MaLR -11 368 1 4 1514 278 156 0 0 chr9 121782099 121782144 -2294028 - Lx7 LINE L1 -745 6951 6907 4 1514 1313 39 0 22 chr9 121782146 121782330 -2293842 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1514 519 145 274 0 chr9 121782340 121782457 -2293715 - Lx7 LINE L1 -884 6812 6664 4 1514 1880 122 6 91 chr9 121782457 121782808 -2293364 + ORR1A4 LTR MaLR 1 321 -8 4 1514 297 170 19 0 chr9 121782812 121782865 -2293307 - Lx7 LINE L1 -1028 6668 6615 4 1514 9183 176 47 44 chr9 121782907 121785252 -2290920 - Lx7 LINE L1 -1040 6656 4298 4 1514 818 154 44 0 chr9 121785252 121785388 -2290784 - B1_Mur4 SINE Alu -7 143 2 4 1514 9183 164 40 52 chr9 121785388 121785769 -2290403 - Lx7 LINE L1 -1583 4297 3898 4 1514 507 291 116 11 chr9 121786695 121786876 -2289296 - B3 SINE B2 -8 208 9 4 1514 406 261 21 0 chr9 121786926 121787068 -2289104 + CT-rich Low_complexity Low_complexity 4 148 0 4 1514 1172 88 68 42 chr9 121787068 121787103 -2289069 - B2_Mm2 SINE B2 0 195 159 4 1514 180 0 0 0 chr9 121787103 121787123 -2289049 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1514 1172 88 68 42 chr9 121787123 121787277 -2288895 - B2_Mm2 SINE B2 -37 158 1 4 1514 257 358 0 12 chr9 121787752 121787834 -2288338 + B4A SINE B4 48 128 -164 4 1514 2003 148 3 6 chr9 121788048 121788361 -2287811 - RLTR10E LTR ERVK -2 388 1 4 1514 622 188 181 0 chr9 121788361 121788491 -2287681 + B4A SINE B4 139 292 0 4 1514 447 192 17 0 chr9 121788506 121788678 -2287494 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 1514 562 180 6 6 chr9 121788708 121788887 -2287285 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1514 634 247 0 118 chr9 121790085 121790305 -2285867 + B3A SINE B2 2 195 -3 4 1514 272 316 61 9 chr9 121790553 121790668 -2285504 - B1F2 SINE Alu -18 131 11 4 1514 425 274 104 0 chr9 121790575 121790681 -2285491 - B4A SINE B4 -94 198 82 4 1514 603 232 76 11 chr9 121790676 121790853 -2285319 - B3 SINE B2 -1 194 1 4 1514 365 117 17 0 chr9 121790873 121790933 -2285239 - B4A SINE B4 -230 62 2 4 1514 31936 71 45 13 chr9 121791708 121797687 -2278485 - L1Md_F2 LINE L1 0 6582 409 4 1514 216 67 0 0 chr9 121798277 121798307 -2277865 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1514 235 263 59 69 chr9 121798314 121798327 -2277845 + B1F SINE Alu 41 126 -23 4 1514 297 261 225 120 chr9 121798327 121798394 -2277778 - B4A SINE B4 -100 192 130 4 1514 2511 86 16 32 chr9 121798394 121798765 -2277407 - RLTR8 LTR ERVK 0 365 1 4 1514 235 263 59 69 chr9 121798765 121798786 -2277386 + B1F SINE Alu 127 141 -8 4 1514 297 252 273 109 chr9 121798786 121798876 -2277296 - B4A SINE B4 -163 129 1 4 1514 207 0 0 0 chr9 121798921 121798944 -2277228 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1514 275 306 107 8 chr9 121800149 121800271 -2275901 + ORR1E LTR MaLR 113 246 -113 4 1514 291 354 43 18 chr9 121800331 121800495 -2275677 + B4 SINE B4 120 287 -5 4 1514 920 272 149 52 chr9 121800795 121801063 -2275109 + RMER5 LTR ERV1 53 354 -180 4 1514 1534 38 38 0 chr9 121801063 121801247 -2274925 - B2_Mm1a SINE B2 -2 191 1 4 1514 920 272 149 52 chr9 121801247 121801366 -2274806 + RMER5 LTR ERV1 355 478 -56 4 1514 1337 95 16 5 chr9 121801809 121802000 -2274172 - B2_Mm2 SINE B2 -2 193 1 4 1514 654 244 107 24 chr9 121802021 121802189 -2273983 - B3A SINE B2 -16 182 1 4 1514 340 200 130 26 chr9 121802212 121802289 -2273883 - ID_B1 SINE B4 0 224 140 4 1514 246 265 165 48 chr9 121802289 121802315 -2273857 - B1F SINE Alu 0 149 35 4 1514 642 281 29 71 chr9 121802662 121802900 -2273272 - B4 SINE B4 -64 228 1 4 1514 225 0 0 0 chr9 121804895 121804920 -2271252 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1514 413 272 107 0 chr9 121804992 121805161 -2271011 + L1MC4a LINE L1 7512 7698 -184 4 1514 227 231 30 15 chr9 121805173 121805239 -2270933 - MLT1A1 LTR MaLR -4 404 338 5 1514 836 206 12 64 chr9 121805239 121805410 -2270762 + RSINE1 SINE B4 4 165 0 5 1514 623 201 6 0 chr9 121805410 121805574 -2270598 + (CA)n Simple_repeat Simple_repeat 1 165 0 5 1514 935 161 0 6 chr9 121805589 121805770 -2270402 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1514 326 212 138 159 chr9 121805779 121806105 -2270067 - ORR1D1 LTR MaLR -51 323 5 5 1514 353 271 153 16 chr9 121806525 121806649 -2269523 + B1F SINE Alu 9 149 0 5 1514 228 233 66 16 chr9 121806644 121806705 -2269467 + ID_B1 SINE B4 77 140 -84 5 1514 214 329 37 25 chr9 121806653 121806734 -2269438 + B1F1 SINE Alu 6 87 -62 5 1514 438 20 0 0 chr9 121806738 121806789 -2269383 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 5 1514 342 115 0 0 chr9 121807031 121807092 -2269080 + (TCCA)n Simple_repeat Simple_repeat 4 64 0 5 1514 315 71 0 0 chr9 121807850 121807892 -2268280 + (TTCTCC)n Simple_repeat Simple_repeat 3 44 0 5 1514 1071 128 0 0 chr9 121807917 121808065 -2268107 - B1_Mus1 SINE Alu 0 148 1 5 1514 186 43 0 0 chr9 121808468 121808491 -2267681 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1514 469 236 19 19 chr9 121808805 121808913 -2267259 - B4 SINE B4 -2 290 183 5 1514 952 215 58 34 chr9 121808923 121809130 -2267042 + B3 SINE B2 1 212 -4 5 1514 225 287 87 29 chr9 121809156 121809260 -2266912 + PB1D7 SINE Alu 1 110 -10 5 1514 212 226 90 45 chr9 121809830 121809941 -2266231 + MIRb SINE MIR 23 138 -130 5 1514 197 271 140 40 chr9 121810475 121810575 -2265597 + MIRc SINE MIR 57 166 -102 5 1514 427 271 209 0 chr9 121812119 121812296 -2263876 - ID_B1 SINE B4 -6 218 5 5 1514 201 39 0 0 chr9 121813800 121813826 -2262346 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1514 1132 50 49 14 chr9 121813827 121813970 -2262202 - B1_Mus1 SINE Alu 0 148 1 5 1514 531 45 0 0 chr9 121814225 121814291 -2261881 + (TC)n Simple_repeat Simple_repeat 2 67 0 5 1514 276 100 0 0 chr9 121814291 121814330 -2261842 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1514 437 235 112 45 chr9 121814454 121814632 -2261540 + L1M2 LINE L1 5092 5281 -862 5 1514 380 245 117 0 chr9 121814682 121814776 -2261396 + ID_B1 SINE B4 82 186 -38 5 1514 229 305 142 9 chr9 121814776 121814788 -2261384 + PB1D7 SINE Alu 1 120 0 5 1514 460 209 49 86 chr9 121814799 121814983 -2261189 + L1M2 LINE L1 5319 5491 -812 5 1514 280 156 0 0 chr9 121814996 121815041 -2261131 + B1_Mur1 SINE Alu 68 112 -37 5 1514 214 256 8 8 chr9 121815302 121815381 -2260791 + G-rich Low_complexity Low_complexity 1 79 0 5 1514 439 240 44 51 chr9 121816051 121816209 -2259963 - RLTR14 LTR ERV1 -1 381 225 5 1514 2007 167 102 87 chr9 121816220 121816739 -2259433 - RLTR11A LTR ERVK 0 528 2 5 1514 233 127 42 113 chr9 121817296 121817367 -2258805 - MTEa LTR MaLR -41 338 273 5 1514 215 250 26 53 chr9 121817390 121817466 -2258706 - RSINE1 SINE B4 -6 159 86 5 1514 277 238 152 109 chr9 121817474 121817639 -2258533 - B4 SINE B4 -120 172 1 5 1514 352 311 46 59 chr9 121819096 121819315 -2256857 + L2a LINE L2 2935 3150 -276 5 1514 711 305 135 18 chr9 121819773 121820268 -2255904 + L1M2 LINE L1 4871 5397 -483 5 1514 635 287 145 4 chr9 121820323 121820578 -2255594 - B4 SINE B4 0 292 2 5 1514 180 111 0 0 chr9 121821772 121821799 -2254373 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1514 394 240 30 10 chr9 121821815 121821916 -2254256 - PB1D10 SINE Alu -14 103 1 5 1514 317 117 0 16 chr9 121825830 121825891 -2250281 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1514 774 84 0 0 chr9 121825972 121826079 -2250093 + (TTCC)n Simple_repeat Simple_repeat 4 110 0 5 1514 807 249 13 71 chr9 121826086 121826311 -2249861 - B3 SINE B2 -4 212 1 5 1514 500 224 126 16 chr9 121826316 121826443 -2249729 - B4A SINE B4 -67 225 85 5 1514 981 149 19 6 chr9 121826432 121826594 -2249578 - ORR1B1 LTR MaLR -222 172 9 5 1514 233 257 43 0 chr9 121826613 121826683 -2249489 + MIRb SINE MIR 174 246 -22 5 1514 299 274 316 11 chr9 121827335 121827512 -2248660 - RMER5 LTR ERV1 -259 275 45 5 1514 1751 205 98 8 chr9 121827943 121828321 -2247851 - MTD LTR MaLR -7 412 1 5 1514 736 318 58 19 chr9 121828616 121828873 -2247299 - RMER5 LTR ERV1 0 534 268 5 1514 413 196 101 18 chr9 121828877 121828986 -2247186 - RMER5 LTR ERV1 -217 317 200 5 1514 2392 169 31 78 chr9 121828986 121829240 -2246932 - RLTR11A2 LTR ERVK 0 527 277 5 1514 1159 88 0 7 chr9 121829240 121829388 -2246784 - B1_Mus2 SINE Alu 0 147 1 5 1514 2392 169 31 78 chr9 121829388 121829684 -2246488 - RLTR11A2 LTR ERVK -251 276 3 5 1514 1516 178 24 39 chr9 121829721 121830054 -2246118 - MYSERV-int LTR ERVK -21 6529 6202 5 1514 842 171 151 33 chr9 121830062 121830274 -2245898 - MYSERV16_I-int LTR ERVK -2087 239 3 5 1514 558 99 0 12 chr9 121830349 121830431 -2245741 - RLTR15 LTR ERVK -7 352 272 5 1514 769 238 18 0 chr9 121830486 121830650 -2245522 + RLTR11A2 LTR ERVK 258 424 -103 5 1514 2188 104 29 0 chr9 121830653 121830962 -2245210 - ORR1A3 LTR MaLR -8 318 1 5 1514 447 148 25 0 chr9 121830971 121831052 -2245120 + RLTR11A2 LTR ERVK 436 518 -9 5 1514 1250 249 99 3 chr9 121831220 121831542 -2244630 + ORR1D2 LTR MaLR 1 353 -17 5 1514 281 235 110 136 chr9 121831567 121831685 -2244487 - B3A SINE B2 -7 191 77 5 1514 311 316 87 29 chr9 121831707 121831948 -2244224 - RLTR15 LTR ERVK -18 341 87 5 1514 241 203 41 109 chr9 121832119 121832211 -2243961 - B3 SINE B2 -113 85 2 5 1514 211 268 36 0 chr9 121832211 121832263 -2243909 - B3A SINE B2 -117 81 28 5 1514 192 321 0 0 chr9 121832263 121832316 -2243856 - MIR SINE MIR -38 224 172 5 1514 628 316 93 55 chr9 121832324 121832722 -2243450 - MER68 LTR ERVL -7 556 144 5 1514 284 315 37 59 chr9 121832911 121833046 -2243126 + L2b LINE L2 3024 3155 -220 5 1514 186 71 0 0 chr9 121833307 121833335 -2242837 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5 1514 1026 239 25 4 chr9 121833345 121833580 -2242592 - Lx6 LINE L1 -26 7434 7195 5 1514 628 186 0 0 chr9 121833586 121833704 -2242468 - PB1D9 SINE Alu -1 119 2 5 1514 257 167 0 0 chr9 121833964 121834006 -2242166 + B1_Mus2 SINE Alu 2 43 -104 5 1514 1376 216 104 14 chr9 121834184 121834550 -2241622 + Lx8 LINE L1 6812 7210 -263 5 1514 238 318 121 23 chr9 121834594 121834726 -2241446 + RSINE1 SINE B4 3 147 -18 5 1514 23 33 0 0 chr9 121834745 121834775 -2241397 + AT_rich Low_complexity Low_complexity 1 30 0 5 1514 521 315 59 56 chr9 121835043 121835346 -2240826 + LTR86B2 LTR ERVL 25 328 -159 5 1514 269 223 244 8 chr9 121835869 121836000 -2240172 + L1M4c LINE L1 860 1021 -5987 5 1514 445 326 74 42 chr9 121836779 121837150 -2239022 + L1M4c LINE L1 1620 1993 -5341 5 1514 267 272 73 12 chr9 121837300 121837382 -2238790 + L1M4c LINE L1 2325 2411 -4597 5 1514 345 267 190 0 chr9 121837383 121837499 -2238673 + RSINE1 SINE B4 4 141 -24 5 1514 306 50 0 0 chr9 121837501 121837541 -2238631 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1514 443 296 169 33 chr9 121837674 121837981 -2238191 + L1M4c LINE L1 6303 6651 -392 5 1514 216 0 0 0 chr9 121837983 121838007 -2238165 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1514 279 133 0 0 chr9 121838007 121838052 -2238120 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1514 405 0 0 0 chr9 121838225 121838270 -2237902 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1514 1111 233 126 57 chr9 121838468 121838591 -2237581 - ORR1D1 LTR MaLR 0 374 246 5 1514 1620 0 0 0 chr9 121838591 121841061 -2235111 + (CAGG)n Simple_repeat Simple_repeat 1 2470 0 5 1514 1111 233 126 57 chr9 121841061 121841274 -2234898 - ORR1D1 LTR MaLR -129 245 14 5 1514 210 296 173 0 chr9 121841957 121842038 -2234134 + RSINE1 SINE B4 63 157 -8 5 1514 232 238 265 0 chr9 121842050 121842235 -2233937 - RLTR21 LTR ERVK -264 1308 1075 5 1514 1637 212 101 8 chr9 121842486 121842862 -2233310 - MTD LTR MaLR -3 416 6 5 1514 253 385 8 0 chr9 121844220 121844350 -2231822 + RodERV21-int LTR ERV1 4397 4527 -464 5 1514 806 181 82 71 chr9 121844531 121844727 -2231445 - B3A SINE B2 0 198 1 5 1514 911 210 75 5 chr9 121844752 121844953 -2231219 + B3 SINE B2 1 215 -1 5 1514 3686 153 113 102 chr9 121845810 121846732 -2229440 - RMER21A LTR ERV1 0 947 16 5 1514 507 184 294 0 chr9 121846754 121846917 -2229255 - RMER21A LTR ERV1 -736 211 1 5 1514 255 217 0 0 chr9 121848653 121848713 -2227459 + (CATA)n Simple_repeat Simple_repeat 3 62 0 5 1514 2218 153 53 10 chr9 121849104 121849500 -2226672 + MTC LTR MaLR 1 413 -8 5 1514 441 54 0 0 chr9 121849586 121849642 -2226530 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1514 238 304 9 9 chr9 121849794 121849907 -2226265 + MurSatRep1 Unknown Unknown 606 718 -1419 5 1514 1225 41 0 0 chr9 121850386 121850533 -2225639 + B1_Mus2 SINE Alu 1 147 0 5 1514 453 154 0 0 chr9 121850619 121850729 -2225443 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1514 23 68 0 0 chr9 121850835 121850879 -2225293 + AT_rich Low_complexity Low_complexity 1 44 0 5 1514 355 236 76 114 chr9 121851642 121851747 -2224425 + PB1 SINE Alu 17 117 0 5 1514 245 29 29 0 chr9 121851753 121851787 -2224385 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1514 751 238 216 21 chr9 121852146 121852429 -2223743 + MTE2b LTR MaLR 4 341 -38 5 1514 1129 257 255 14 chr9 121852449 121853021 -2223151 + MTE-int LTR MaLR 4 713 -867 5 1514 5739 146 121 11 chr9 121853022 121854665 -2221507 - Lx5 LINE L1 -678 6372 4532 5 1514 242 245 0 0 chr9 121854760 121854801 -2221371 + B3 SINE B2 1 41 -175 5 1514 953 231 142 10 chr9 121854801 121855090 -2221082 - ORR1D1 LTR MaLR 0 374 48 5 1514 546 225 25 16 chr9 121855071 121855193 -2220979 + B3A SINE B2 12 134 -64 5 1514 222 115 0 75 chr9 121855524 121855618 -2220554 + (TCTCTG)n Simple_repeat Simple_repeat 5 91 0 5 1514 3015 56 10 5 chr9 121855787 121856185 -2219987 + MTB LTR MaLR 1 400 0 5 1514 402 209 6 212 chr9 121856215 121856385 -2219787 - B1F SINE Alu -12 137 3 5 1514 416 276 0 0 chr9 121856389 121856487 -2219685 - MTEa LTR MaLR -193 186 89 6 1514 511 286 0 36 chr9 121857206 121857344 -2218828 - B3A SINE B2 -64 134 2 6 1514 460 250 50 8 chr9 121857455 121857576 -2218596 + RSINE1 SINE B4 4 129 -36 6 1514 231 88 0 0 chr9 121857578 121857612 -2218560 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1514 1107 248 50 103 chr9 121857652 121858048 -2218124 - MTE2a LTR MaLR 0 379 5 6 1514 747 236 62 0 chr9 121858051 121858246 -2217926 + B3 SINE B2 2 208 -8 6 1514 3560 72 6 42 chr9 121858958 121859478 -2216694 + L1_Mus1 LINE L1 6066 6566 -1 6 1514 204 203 0 48 chr9 121859926 121859988 -2216184 + G-rich Low_complexity Low_complexity 6 64 0 6 1514 353 195 138 0 chr9 121861444 121861531 -2214641 - RSINE1 SINE B4 -56 109 11 6 1514 532 222 111 0 chr9 121863640 121863766 -2212406 - MTEa LTR MaLR 0 379 240 6 1514 1041 185 84 0 chr9 121864436 121864663 -2211509 + RMER4B LTR ERVK 17 262 -323 6 1514 231 196 71 0 chr9 121864660 121864716 -2211456 + RMER4B LTR ERVK 459 518 -67 6 1514 232 109 0 21 chr9 121864774 121864821 -2211351 + RMER4B LTR ERVK 529 574 -11 6 1514 194 242 262 16 chr9 121864875 121864997 -2211175 + MIRb SINE MIR 108 259 -9 6 1514 303 312 47 8 chr9 121865232 121865361 -2210811 + Charlie4a DNA MER1_type 1 134 -374 6 1514 197 316 0 48 chr9 121865511 121865594 -2210578 + L2c LINE L2 3263 3341 -46 6 1514 235 309 17 70 chr9 121865787 121865902 -2210270 + MER3 DNA MER1_type 5 113 -96 6 1514 491 246 3 35 chr9 121866161 121866481 -2209691 + (TG)n Simple_repeat Simple_repeat 1 309 0 6 1514 250 183 14 14 chr9 121866497 121866569 -2209603 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1514 274 178 25 62 chr9 121869793 121869955 -2206217 + (CA)n Simple_repeat Simple_repeat 1 156 0 6 1514 225 0 0 0 chr9 121869976 121870001 -2206171 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1514 221 147 12 62 chr9 121870030 121870110 -2206062 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1514 233 29 0 29 chr9 121870132 121870148 -2206024 + (CA)n Simple_repeat Simple_repeat 2 17 0 6 1514 342 0 0 0 chr9 121870148 121870186 -2205986 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1514 233 29 0 29 chr9 121870186 121870204 -2205968 + (CA)n Simple_repeat Simple_repeat 2 19 0 6 1514 203 151 13 64 chr9 121870233 121870311 -2205861 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1514 206 32 0 31 chr9 121870333 121870347 -2205825 + (CA)n Simple_repeat Simple_repeat 2 15 0 6 1514 252 0 0 0 chr9 121870347 121870375 -2205797 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1514 206 32 0 31 chr9 121870375 121870392 -2205780 + (CA)n Simple_repeat Simple_repeat 2 18 0 6 1514 307 194 21 84 chr9 121870442 121870633 -2205539 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1514 257 296 7 43 chr9 121870664 121870802 -2205370 + (CA)n Simple_repeat Simple_repeat 2 134 0 6 1514 824 264 71 22 chr9 121871191 121871458 -2204714 - ORR1E LTR MaLR -41 318 39 6 1514 180 0 0 0 chr9 121872360 121872380 -2203792 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 1514 540 111 0 0 chr9 121872963 121873044 -2203128 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1514 1348 92 0 10 chr9 121873046 121873243 -2202929 - B2_Mm2 SINE B2 0 195 1 6 1514 574 293 14 43 chr9 121873255 121873462 -2202710 - B3A SINE B2 0 216 16 6 1514 877 248 5 0 chr9 121875445 121875643 -2200529 + B3 SINE B2 1 199 -17 6 1514 1309 241 25 22 chr9 121875693 121876054 -2200118 - RCHARR1 DNA MER1_type -18 956 595 6 1514 553 198 194 21 chr9 121876055 121876241 -2199931 + B4A SINE B4 1 218 -74 6 1514 315 0 0 0 chr9 121876326 121876361 -2199811 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1514 271 275 39 55 chr9 121876364 121876491 -2199681 - RMER12 LTR ERVK -462 860 736 6 1514 24 0 0 0 chr9 121876505 121876529 -2199643 + AT_rich Low_complexity Low_complexity 1 24 0 6 1514 996 216 5 19 chr9 121876611 121876823 -2199349 - B3 SINE B2 -7 209 1 6 1514 549 208 127 30 chr9 121877073 121877207 -2198965 - MTE2a LTR MaLR -126 253 107 6 1514 510 241 18 0 chr9 121877199 121877311 -2198861 + MTE2b LTR MaLR 263 376 -3 6 1514 288 152 0 0 chr9 121877610 121877656 -2198516 + B4A SINE B4 3 48 -244 6 1514 325 109 125 0 chr9 121879652 121879716 -2196456 - RMER15 LTR ERVL -90 485 414 6 1514 882 115 14 14 chr9 121880846 121880987 -2195185 + B1_Mur4 SINE Alu 2 142 -8 6 1514 1466 206 134 3 chr9 121881093 121881443 -2194729 + MTC LTR MaLR 1 396 -25 6 1514 372 324 44 44 chr9 121881868 121882193 -2193979 + RMER12 LTR ERVK 767 988 -334 6 1514 221 239 0 0 chr9 121882199 121882245 -2193927 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1514 244 300 17 83 chr9 121883066 121883186 -2192986 + MIR SINE MIR 36 147 -115 6 1514 1780 198 60 8 chr9 121883718 121884115 -2192057 - MTD LTR MaLR 0 419 2 6 1514 877 243 70 11 chr9 121885732 121886002 -2190170 - B4A SINE B4 -5 287 2 6 1514 208 304 31 16 chr9 121886358 121886433 -2189739 + MIRc SINE MIR 48 121 -141 6 1514 249 163 0 0 chr9 121887884 121887927 -2188245 - ID SINE ID -174 50 8 6 1514 1035 188 45 5 chr9 121887969 121888000 -2188172 - B3 SINE B2 -6 210 173 6 1514 315 0 0 0 chr9 121888000 121888035 -2188137 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1514 1035 188 45 5 chr9 121888035 121888201 -2187971 - B3 SINE B2 -44 172 6 6 1514 632 247 25 59 chr9 121888209 121888411 -2187761 - B3A SINE B2 0 198 4 6 1514 623 298 19 0 chr9 121888983 121889144 -2187028 - B3 SINE B2 -6 210 47 6 1514 1590 247 128 27 chr9 121889652 121890214 -2185958 + Lx8 LINE L1 6336 6954 -519 6 1514 573 314 121 37 chr9 121890271 121890651 -2185521 + Lx8 LINE L1 7038 7449 -24 6 1514 797 259 37 0 chr9 121896188 121896377 -2179795 - B3 SINE B2 -4 212 17 6 1514 324 219 0 52 chr9 121896790 121896867 -2179305 + MTE2b LTR MaLR 7 79 -300 6 1515 1197 103 27 0 chr9 121897249 121897433 -2178739 + B2_Mm1a SINE B2 2 190 -3 6 1515 270 0 0 0 chr9 121897463 121897493 -2178679 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1515 269 272 62 0 chr9 121898382 121898463 -2177709 - MLT1C LTR MaLR -12 455 370 6 1515 305 290 70 31 chr9 121899025 121899153 -2177019 + B3A SINE B2 84 216 0 6 1515 372 226 97 10 chr9 121899969 121900072 -2176100 + PB1D10 SINE Alu 2 113 -4 6 1515 229 256 59 104 chr9 121900234 121900282 -2175890 - L1MD3 LINE L1 -289 7706 7667 6 1515 823 230 39 5 chr9 121900282 121900487 -2175685 - B3 SINE B2 -4 212 1 6 1515 229 256 59 104 chr9 121900487 121900573 -2175599 - L1MD3 LINE L1 -329 7666 7578 6 1515 219 213 0 21 chr9 121900806 121900854 -2175318 + MER5A DNA MER1_type 116 162 -27 6 1515 212 161 203 31 chr9 121902059 121902123 -2174049 - ID4_ SINE ID -7 76 2 6 1515 213 39 0 0 chr9 121902681 121902707 -2173465 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1515 247 359 134 15 chr9 121903210 121903411 -2172761 - MIRb SINE MIR -13 255 31 6 1515 305 248 143 0 chr9 121903670 121903775 -2172397 + PB1 SINE Alu 5 124 -3 6 1515 397 329 57 6 chr9 121904168 121904327 -2171845 - MIRb SINE MIR -56 212 46 6 1515 266 119 82 33 chr9 121905512 121905573 -2170599 + MTEa LTR MaLR 288 351 -28 6 1515 481 84 42 0 chr9 121905949 121906044 -2170128 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 6 1515 183 80 0 0 chr9 121906046 121906071 -2170101 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1515 229 370 59 29 chr9 121906379 121906549 -2169623 - MLT1N2 LTR MaLR 0 562 388 6 1515 204 188 0 0 chr9 121906956 121906988 -2169184 + polypurine Low_complexity Low_complexity 2 33 0 6 1515 843 270 104 84 chr9 121907161 121907517 -2168655 + MTEa LTR MaLR 17 379 0 6 1515 1597 228 27 0 chr9 121907867 121908236 -2167936 - MTEb LTR MaLR 0 379 1 6 1515 365 261 64 82 chr9 121909846 121910017 -2166155 - L1MB2 LINE L1 -3 6168 6001 6 1515 2856 97 71 7 chr9 121910034 121910482 -2165690 - RLTR44C LTR ERVK -24 478 2 6 1515 4504 55 5 2 chr9 121910483 121911050 -2165122 - RLTR44-int LTR ERVK 0 2812 2244 6 1515 586 281 30 56 chr9 121911061 121911329 -2164843 - IAPEz-int LTR ERVK -2798 3683 3423 6 1515 2257 169 25 61 chr9 121911408 121911963 -2164209 - RLTR44-int LTR ERVK -1480 1332 798 6 1515 621 122 0 0 chr9 121911963 121912061 -2164111 - RLTR44-int LTR ERVK -1899 913 816 6 1515 1525 105 4 45 chr9 121912114 121912383 -2163789 - RLTR44-int LTR ERVK -2554 258 1 6 1515 3015 108 30 2 chr9 121912397 121912859 -2163313 - RLTR44C LTR ERVK -27 475 1 6 1515 266 256 30 120 chr9 121912922 121912954 -2163218 + MT2B LTR ERVL 137 156 -445 6 1515 748 189 28 0 chr9 121912954 121913097 -2163075 + B1_Mur4 SINE Alu 4 150 0 6 1515 202 106 21 21 chr9 121913160 121913208 -2162964 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1515 250 234 173 87 chr9 121913212 121913362 -2162810 - RSINE1 SINE B4 0 165 3 6 1515 245 179 18 0 chr9 121913362 121913418 -2162754 - L1MB2 LINE L1 -263 5908 5852 6 1515 742 186 14 14 chr9 121913460 121913478 -2162694 - B1_Mur2 SINE Alu -6 143 124 6 1515 251 0 59 0 chr9 121913478 121913512 -2162660 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1515 742 186 14 14 chr9 121913512 121913635 -2162537 - B1_Mur2 SINE Alu -26 123 2 6 1515 274 238 157 55 chr9 121913853 121914002 -2162170 + MIR SINE MIR 13 178 -90 6 1515 211 357 0 0 chr9 121915422 121915492 -2160680 - MIR3 SINE MIR -30 178 109 6 1515 478 232 27 26 chr9 121915535 121915719 -2160453 - L1MB2 LINE L1 -521 5668 5488 6 1515 592 253 13 20 chr9 121916916 121917065 -2159107 + B1F SINE Alu 1 148 -1 6 1515 2028 133 13 53 chr9 121917174 121917572 -2158600 + RLTR14 LTR ERV1 1 382 0 6 1515 313 302 0 0 chr9 121917634 121917720 -2158452 + PB1D10 SINE Alu 1 86 -31 6 1515 520 286 17 0 chr9 121918837 121918956 -2157216 - B4A SINE B4 -78 214 94 6 1515 948 60 23 0 chr9 121918970 121919103 -2157069 - B2_Mm2 SINE B2 -59 136 1 6 1515 21 0 0 0 chr9 121919135 121919156 -2157016 + AT_rich Low_complexity Low_complexity 1 21 0 6 1515 577 221 27 20 chr9 121919347 121919495 -2156677 - RCHARR1 DNA MER1_type 0 974 826 6 1515 434 222 56 0 chr9 121919506 121919614 -2156558 + RSINE1 SINE B4 15 128 -37 6 1515 428 236 69 31 chr9 121919670 121919827 -2156345 - RCHARR1 DNA MER1_type -152 822 680 6 1515 915 289 115 3 chr9 121919826 121920149 -2156023 - RCHARR1 DNA MER1_type -615 359 1 6 1515 255 297 0 15 chr9 121920162 121920218 -2155954 + ID4_ SINE ID 19 74 -9 6 1515 333 0 0 0 chr9 121920218 121920255 -2155917 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 6 1515 783 245 5 113 chr9 121920279 121920500 -2155672 - B4 SINE B4 -95 197 1 6 1515 238 268 75 0 chr9 121923807 121923900 -2152272 + L1MA4 LINE L1 5802 5938 -362 6 1515 416 204 43 0 chr9 121925879 121925972 -2150200 + PB1D10 SINE Alu 13 109 -8 6 1515 185 0 0 39 chr9 121925983 121926009 -2150163 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 6 1515 396 0 0 0 chr9 121926275 121926319 -2149853 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1515 1082 233 133 16 chr9 121926510 121926885 -2149287 + MTB_Mm LTR MaLR 1 419 0 7 1515 229 175 0 0 chr9 121926885 121926925 -2149247 + MTB_Mm-int LTR MaLR 1 40 -1469 7 1515 491 188 145 119 chr9 121926982 121927175 -2148997 + MTD LTR MaLR 222 419 0 7 1515 229 16 0 127 chr9 121927406 121927477 -2148695 + (CCCTAA)n Simple_repeat Simple_repeat 1 62 0 7 1515 671 181 0 53 chr9 121927692 121927879 -2148293 + CT-rich Low_complexity Low_complexity 3 179 0 7 1515 480 259 25 25 chr9 121928875 121929037 -2147135 + B3 SINE B2 55 216 0 7 1515 264 77 0 0 chr9 121929189 121929228 -2146944 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1515 357 223 0 0 chr9 121929252 121929382 -2146790 + (TG)n Simple_repeat Simple_repeat 2 131 0 7 1515 941 306 63 60 chr9 121929452 121929660 -2146512 + L1M4 LINE L1 785 989 -5553 7 1515 661 177 210 6 chr9 121929660 121929836 -2146336 + B3 SINE B2 5 216 0 7 1515 941 306 63 60 chr9 121929836 121930245 -2145927 + L1M4 LINE L1 990 1404 -5138 7 1515 2509 139 32 5 chr9 121930292 121930697 -2145475 + MTC LTR MaLR 5 420 -1 7 1515 4043 139 88 16 chr9 121930734 121931510 -2144662 + MTB_Mm-int LTR MaLR 427 1258 0 7 1515 2230 122 19 19 chr9 121931514 121931883 -2144289 + MTB_Mm LTR MaLR 4 372 -35 7 1515 195 42 0 0 chr9 121933399 121933423 -2142749 + (CAA)n Simple_repeat Simple_repeat 2 25 0 7 1515 361 298 167 6 chr9 121934988 121935150 -2141022 - L1MA4 LINE L1 -377 5923 5736 7 1515 544 201 0 16 chr9 121935790 121935972 -2140200 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1515 258 32 0 0 chr9 121935977 121936008 -2140164 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1515 324 0 0 0 chr9 121936008 121936043 -2140129 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1515 234 0 0 0 chr9 121936646 121936672 -2139500 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1515 234 0 0 0 chr9 121937829 121937855 -2138317 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1515 877 258 34 19 chr9 121937874 121938143 -2138029 - B4A SINE B4 -18 274 2 7 1515 213 39 0 0 chr9 121938214 121938240 -2137932 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1515 236 323 104 31 chr9 121938617 121938780 -2137392 + MIR SINE MIR 59 233 -29 7 1515 220 246 40 14 chr9 121940057 121940131 -2136041 + MER5B DNA MER1_type 1 76 -102 7 1515 1155 236 50 29 chr9 121940180 121940459 -2135713 + B4 SINE B4 8 292 0 7 1515 235 378 62 14 chr9 121940515 121940660 -2135512 - MER5A1 DNA MER1_type -13 153 2 7 1515 453 295 68 24 chr9 121942070 121942275 -2133897 + MIR SINE MIR 6 219 -43 7 1515 1201 41 0 0 chr9 121942284 121942430 -2133742 + B1_Mm SINE Alu 2 147 0 7 1515 283 94 0 45 chr9 121942430 121942497 -2133675 + (CAAA)n Simple_repeat Simple_repeat 3 66 0 7 1515 530 352 35 22 chr9 121942962 121943194 -2132978 + Tigger5 DNA MER2_type 3 237 -2169 7 1515 186 336 71 39 chr9 121943294 121943421 -2132751 + L2 LINE L2 2661 2791 -628 7 1515 470 162 39 13 chr9 121944095 121944562 -2131610 + (CA)n Simple_repeat Simple_repeat 1 479 0 7 1515 575 44 44 0 chr9 121944585 121944676 -2131496 + (CACAC)n Simple_repeat Simple_repeat 1 95 0 7 1515 469 261 132 49 chr9 121945491 121945564 -2130608 + B4A SINE B4 5 87 -205 7 1515 387 0 0 0 chr9 121945564 121945607 -2130565 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1515 469 261 132 49 chr9 121945607 121945799 -2130373 + B4A SINE B4 88 291 -1 7 1515 551 299 0 55 chr9 121946507 121946652 -2129520 + RSINE1 SINE B4 29 165 0 7 1515 443 237 123 32 chr9 121947152 121947317 -2128855 + B3A SINE B2 15 193 -2 7 1515 21 0 0 0 chr9 121947595 121947616 -2128556 + AT_rich Low_complexity Low_complexity 1 21 0 7 1515 503 270 33 13 chr9 121947947 121948097 -2128075 + L1M5 LINE L1 5567 5719 -460 7 1515 403 209 121 55 chr9 121948097 121948188 -2127984 - B1F1 SINE Alu -30 97 1 7 1515 415 270 6 11 chr9 121948260 121948440 -2127732 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1515 854 215 0 48 chr9 121948574 121948760 -2127412 - B3A SINE B2 -6 192 16 7 1515 346 123 145 58 chr9 121948774 121948843 -2127329 - B4 SINE B4 -200 92 18 7 1515 514 238 0 10 chr9 121948990 121949092 -2127080 + PB1D7 SINE Alu 14 114 -6 7 1515 544 289 150 9 chr9 121949152 121949365 -2126807 + L1M2 LINE L1 2381 2623 -4226 7 1515 1203 205 9 0 chr9 121949559 121949769 -2126403 + B3 SINE B2 1 212 -4 7 1515 530 231 34 8 chr9 121949890 121950008 -2126164 - ORR1D2 LTR MaLR 0 370 250 7 1515 1015 316 84 80 chr9 121950008 121950755 -2125417 + L1M2 LINE L1 3136 3913 -2932 7 1515 260 150 0 0 chr9 121950755 121950795 -2125377 + 5S rRNA rRNA 1 40 -81 7 1515 1015 316 84 80 chr9 121950795 121951068 -2125104 + L1M2 LINE L1 3914 4199 -2646 7 1515 1452 234 46 24 chr9 121951073 121951469 -2124703 + MTE2a LTR MaLR 1 376 -3 7 1515 290 280 49 20 chr9 121951470 121951572 -2124600 + L1_Mur1 LINE L1 3489 3593 -2293 7 1515 261 0 0 0 chr9 121951772 121951801 -2124371 + (TGGA)n Simple_repeat Simple_repeat 3 31 0 7 1515 243 0 0 0 chr9 121951801 121951827 -2124345 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1515 285 29 0 0 chr9 121951827 121951860 -2124312 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1515 197 164 0 52 chr9 121951959 121952036 -2124136 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 1515 189 74 0 0 chr9 121952057 121952084 -2124088 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 7 1515 191 88 0 29 chr9 121952142 121952177 -2123995 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1515 201 94 0 0 chr9 121952177 121952209 -2123963 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1515 319 158 8 52 chr9 121952277 121952411 -2123761 + (TATG)n Simple_repeat Simple_repeat 1 128 0 7 1515 381 272 43 0 chr9 121952416 121952508 -2123664 - B4A SINE B4 0 292 197 7 1515 1621 209 15 27 chr9 121952510 121952844 -2123328 - MTD LTR MaLR -8 411 82 7 1515 597 248 85 43 chr9 121952840 121953004 -2123168 - B4A SINE B4 -93 199 29 7 1515 218 254 149 0 chr9 121953038 121953105 -2123067 - B4A SINE B4 -214 78 2 7 1515 655 295 54 79 chr9 121953107 121953460 -2122712 + L1MEc LINE L1 744 1087 -5313 7 1515 701 213 6 0 chr9 121953823 121953997 -2122175 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 7 1515 376 209 0 0 chr9 121954471 121954538 -2121634 - PB1D10 SINE Alu -5 112 46 7 1515 567 308 78 17 chr9 121954612 121954854 -2121318 - MLT1F LTR MaLR -1 559 306 7 1515 627 229 8 0 chr9 121954873 121954995 -2121177 + B4 SINE B4 168 290 -2 7 1515 348 252 0 0 chr9 121955009 121955116 -2121056 + (CA)n Simple_repeat Simple_repeat 1 107 0 7 1515 1434 200 146 54 chr9 121955147 121955517 -2120655 - MTD LTR MaLR -15 404 1 7 1515 321 100 0 0 chr9 121955525 121955575 -2120597 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1515 477 0 0 0 chr9 121955575 121955627 -2120545 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1515 340 296 62 137 chr9 121956005 121956342 -2119830 - LTR16D2 LTR ERVL -207 365 54 7 1515 781 270 83 29 chr9 121956729 121956921 -2119251 - B4A SINE B4 -3 289 85 7 1515 429 109 0 0 chr9 121956921 121956985 -2119187 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 7 1515 781 270 83 29 chr9 121956985 121957032 -2119140 - B4A SINE B4 -208 84 37 7 1515 414 269 106 6 chr9 121957856 121958017 -2118155 - MER45B DNA Tip100 -5 1035 859 7 1515 232 113 18 36 chr9 121958021 121958076 -2118096 + (TATG)n Simple_repeat Simple_repeat 1 54 0 7 1515 668 238 33 44 chr9 121958077 121958257 -2117915 - B3A SINE B2 -16 182 5 7 1515 252 250 149 41 chr9 121958265 121958386 -2117786 - MER45B DNA Tip100 -366 674 541 7 1515 410 324 90 0 chr9 121958537 121958682 -2117490 - MER45B DNA Tip100 -817 223 66 7 1515 240 59 0 0 chr9 121959330 121959364 -2116808 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 7 1515 283 283 14 0 chr9 121959596 121959734 -2116438 + (CA)n Simple_repeat Simple_repeat 1 140 0 7 1515 3237 86 0 7 chr9 121959787 121960223 -2115949 + L1_Mus4 LINE L1 6203 6635 -1 7 1515 1014 239 9 0 chr9 121961574 121961796 -2114376 + ID_B1 SINE B4 1 224 0 7 1515 276 279 12 0 chr9 121961838 121961924 -2114248 + (TG)n Simple_repeat Simple_repeat 2 88 0 7 1515 321 198 0 0 chr9 121961952 121962048 -2114124 + CT-rich Low_complexity Low_complexity 2 97 0 7 1515 180 111 0 0 chr9 121962059 121962086 -2114086 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1515 372 296 0 44 chr9 121962099 121962212 -2113960 - PB1D10 SINE Alu -3 114 7 7 1515 274 311 24 70 chr9 121962118 121962282 -2113890 - ID_B1 SINE B4 -48 176 26 7 1515 432 0 0 0 chr9 121963441 121963489 -2112683 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1515 757 232 104 75 chr9 121963505 121963785 -2112387 - B4 SINE B4 -3 289 2 7 1515 1463 211 102 50 chr9 121963998 121964343 -2111829 - MTD LTR MaLR -15 404 41 7 1515 1322 109 111 24 chr9 121964343 121964550 -2111622 - URR1B DNA MER1_type 0 225 1 7 1515 1463 211 102 50 chr9 121964550 121964588 -2111584 - MTD LTR MaLR -379 40 1 7 1515 249 342 41 33 chr9 121964956 121965077 -2111095 - L2b LINE L2 -6 3369 3248 7 1515 514 259 118 18 chr9 121965689 121965858 -2110314 - MER53 DNA hAT -6 187 2 7 1515 409 236 21 11 chr9 121966190 121966284 -2109888 + B4A SINE B4 1 95 -197 7 1515 426 20 0 0 chr9 121966406 121966457 -2109715 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1515 504 238 214 10 chr9 121966477 121966757 -2109415 + ORR1E LTR MaLR 13 379 0 7 1515 207 0 0 0 chr9 121966947 121966970 -2109202 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 7 1515 185 325 126 8 chr9 121967191 121967318 -2108854 - L2a LINE L2 -10 3416 3275 7 1515 208 222 29 73 chr9 121967649 121967717 -2108455 + MER5A DNA MER1_type 7 71 -118 7 1515 22 0 0 0 chr9 121968627 121968649 -2107523 + AT_rich Low_complexity Low_complexity 1 22 0 7 1515 557 281 33 2 chr9 121968718 121968864 -2107308 + MTE2b LTR MaLR 16 166 -213 7 1515 343 322 203 26 chr9 121969290 121969454 -2106718 + L1ME4a LINE L1 5655 5844 -280 7 1515 719 250 4 98 chr9 121969454 121969689 -2106483 - B3 SINE B2 0 216 4 7 1515 343 322 203 26 chr9 121969689 121969808 -2106364 + L1ME4a LINE L1 5845 5988 -136 7 1515 761 228 103 5 chr9 121969808 121970011 -2106161 + ID_B1 SINE B4 2 224 0 7 1515 343 322 203 26 chr9 121970011 121970022 -2106150 + L1ME4a LINE L1 5989 6004 -120 7 1515 382 202 119 46 chr9 121970022 121970131 -2106041 + PB1D10 SINE Alu 1 117 0 7 1515 343 322 203 26 chr9 121970131 121970214 -2105958 + L1ME4a LINE L1 6005 6101 -23 7 1515 243 305 98 0 chr9 121971188 121971270 -2104902 + RSINE1 SINE B4 62 151 -14 7 1515 904 215 79 39 chr9 121971591 121971794 -2104378 + ID_B1 SINE B4 1 211 -13 8 1515 306 336 229 3 chr9 121972459 121972752 -2103420 + L1MC3 LINE L1 7419 7777 -8 8 1515 940 147 6 11 chr9 121972758 121972937 -2103235 + CT-rich Low_complexity Low_complexity 3 180 0 8 1515 710 251 120 45 chr9 121972957 121973224 -2102948 - B4 SINE B4 -3 289 3 8 1515 197 315 105 32 chr9 121973252 121973347 -2102825 + MIRc SINE MIR 31 132 -136 8 1515 628 311 61 0 chr9 121973566 121973746 -2102426 + B4A SINE B4 2 192 -100 8 1515 486 0 0 0 chr9 121973762 121973816 -2102356 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1515 318 26 0 0 chr9 121973839 121973878 -2102294 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 8 1515 326 311 130 38 chr9 121974818 121975079 -2101093 + Charlie20a DNA Charlie 119 403 -404 8 1515 724 214 7 20 chr9 121975183 121975331 -2100841 - B1_Mur2 SINE Alu -1 148 3 8 1515 222 208 0 0 chr9 121975352 121975405 -2100767 + CT-rich Low_complexity Low_complexity 2 54 0 8 1515 594 271 40 5 chr9 121975407 121975563 -2100609 - ID_B1 SINE B4 -47 245 82 8 1515 1452 45 0 0 chr9 121977280 121977773 -2098399 + (TG)n Simple_repeat Simple_repeat 1 493 0 8 1515 425 215 7 20 chr9 121977874 121978021 -2098151 + CT-rich Low_complexity Low_complexity 3 147 0 8 1515 672 265 114 18 chr9 121979067 121979286 -2096886 + RMER15 LTR ERVL 336 575 0 8 1515 666 219 279 31 chr9 121979296 121979522 -2096650 + B4 SINE B4 10 291 -1 8 1515 775 260 116 20 chr9 121980703 121980954 -2095218 + B4 SINE B4 2 276 -16 8 1515 307 214 215 33 chr9 121981066 121981187 -2094985 + L1MC5 LINE L1 6665 6807 -1154 8 1515 766 238 112 58 chr9 121981300 121981576 -2094596 + B4 SINE B4 2 292 0 8 1515 249 301 95 32 chr9 121981720 121981766 -2094406 + L1MC5 LINE L1 7292 7337 -624 8 1515 1426 137 9 22 chr9 121981766 121981990 -2094182 - URR1B DNA MER1_type 0 225 5 8 1515 249 301 95 32 chr9 121981990 121982132 -2094040 + L1MC5 LINE L1 7338 7492 -469 8 1515 276 339 17 0 chr9 121982547 121982665 -2093507 + L1M3 LINE L1 5164 5283 -857 8 1515 364 220 57 48 chr9 121982833 121982938 -2093234 + B4A SINE B4 187 292 0 8 1515 71 33 0 0 chr9 121982938 121983030 -2093142 + AT_rich Low_complexity Low_complexity 1 92 0 8 1515 198 0 0 0 chr9 121983032 121983054 -2093118 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 8 1515 650 296 33 12 chr9 121983503 121983746 -2092426 + B4 SINE B4 8 288 -4 8 1515 276 30 0 0 chr9 121983746 121983779 -2092393 + (CACG)n Simple_repeat Simple_repeat 1 33 0 8 1515 23 0 0 0 chr9 121984072 121984095 -2092077 + AT_rich Low_complexity Low_complexity 1 23 0 8 1515 413 188 88 10 chr9 121984578 121984680 -2091492 + B1F SINE Alu 22 131 -18 8 1515 325 325 132 29 chr9 121984922 121985232 -2090940 + L1ME4a LINE L1 5625 5966 -158 8 1515 1058 221 11 43 chr9 121985393 121985646 -2090526 + ORR1E LTR MaLR 6 275 -104 8 1515 274 290 114 68 chr9 121986245 121986552 -2089620 - Lx8 LINE L1 -9 7464 7144 8 1515 1292 230 107 16 chr9 121986773 121987157 -2089015 - MTD LTR MaLR 0 419 1 8 1515 527 335 58 37 chr9 121987181 121987423 -2088749 + MLT1J LTR MaLR 264 510 -2 8 1515 577 255 185 6 chr9 121988296 121988458 -2087714 + B4A SINE B4 1 191 -101 8 1515 288 0 0 0 chr9 121988507 121988539 -2087633 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 1515 447 19 0 0 chr9 121988864 121988916 -2087256 + (TCCC)n Simple_repeat Simple_repeat 3 54 0 8 1515 414 120 46 46 chr9 121988966 121989141 -2087031 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 8 1515 297 145 48 36 chr9 121989168 121989333 -2086839 + (TCTCTG)n Simple_repeat Simple_repeat 6 172 0 8 1515 1324 256 96 11 chr9 121990047 121990506 -2085666 + L1MB7 LINE L1 5551 6048 -136 8 1515 573 165 30 6 chr9 121990636 121990801 -2085371 + (CA)n Simple_repeat Simple_repeat 2 170 0 8 1515 420 242 69 29 chr9 121990801 121990903 -2085269 + RSINE1 SINE B4 43 148 -17 8 1515 492 18 0 0 chr9 121990905 121990962 -2085210 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1515 36 97 0 0 chr9 121990985 121991098 -2085074 + AT_rich Low_complexity Low_complexity 1 113 0 8 1515 889 179 0 7 chr9 121991101 121991247 -2084925 + B1_Mur2 SINE Alu 3 147 -2 8 1515 330 213 0 12 chr9 121991540 121991625 -2084547 + L1_Rod LINE L1 4072 4167 -1979 8 1515 633 265 12 18 chr9 121991629 121991794 -2084378 + RSINE1 SINE B4 2 165 0 8 1515 976 234 13 27 chr9 121992374 121992598 -2083574 - ID_B1 SINE B4 -2 222 2 8 1515 259 333 31 70 chr9 121993073 121993202 -2082970 + MIRc SINE MIR 128 251 -17 8 1515 192 77 0 0 chr9 121993524 121993550 -2082622 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 8 1515 577 222 0 17 chr9 121993922 121994041 -2082131 + PB1D10 SINE Alu 1 117 0 8 1515 726 91 0 0 chr9 121994596 121994717 -2081455 + (GA)n Simple_repeat Simple_repeat 2 122 0 8 1515 687 150 7 14 chr9 121995493 121995635 -2080537 + GA-rich Low_complexity Low_complexity 2 142 0 8 1515 415 254 174 42 chr9 121996373 121996517 -2079655 + RSINE1 SINE B4 3 165 0 8 1515 308 232 20 20 chr9 121996692 121996793 -2079379 + MER89 LTR ERV1 436 536 -23 8 1515 24 67 0 0 chr9 121997391 121997436 -2078736 + AT_rich Low_complexity Low_complexity 1 45 0 8 1515 222 316 25 50 chr9 121997544 121997624 -2078548 + B4 SINE B4 1 78 -214 8 1515 547 289 0 0 chr9 121997813 121997934 -2078238 + ID_B1 SINE B4 86 206 -18 8 1515 246 284 25 0 chr9 121999218 121999299 -2076873 - L1ME3B LINE L1 -32 6208 6126 8 1515 1104 247 59 103 chr9 122000180 122000568 -2075604 + MTEa LTR MaLR 3 373 -6 1 1515 357 305 0 0 chr9 122000654 122000736 -2075436 - AluG_3 SINE Alu -93 218 137 2 1515 267 308 72 40 chr9 122002166 122002291 -2073881 + LTR16A1 LTR ERVL 210 338 -118 3 1515 259 200 22 0 chr9 122002313 122002358 -2073814 + LTR16A1 LTR ERVL 411 456 0 3 1515 1292 249 29 112 chr9 122002437 122002849 -2073323 + MTE2b LTR MaLR 1 378 -1 4 1515 600 224 65 65 chr9 122003902 122004088 -2072084 + B4 SINE B4 1 186 -106 5 1515 1713 144 39 32 chr9 122005214 122005523 -2070649 - Lx LINE L1 0 6654 6344 6 1515 684 302 121 12 chr9 122005829 122006077 -2070095 - B4A SINE B4 -12 280 6 7 1515 185 228 262 19 chr9 122006256 122006359 -2069813 + L2b LINE L2 2727 2854 -565 8 1515 436 303 77 39 chr9 122006398 122006580 -2069592 + MER3 DNA MER1_type 21 209 0 9 1515 926 269 31 28 chr9 122006924 122007215 -2068957 + B4A SINE B4 1 292 0 1 1515 617 187 4 0 chr9 122007226 122007471 -2068701 + (CA)n Simple_repeat Simple_repeat 1 246 0 1 1515 640 167 0 22 chr9 122007510 122007694 -2068478 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1515 189 0 0 0 chr9 122007694 122007715 -2068457 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1515 240 35 0 0 chr9 122007715 122007743 -2068429 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1515 187 347 99 64 chr9 122008553 122008836 -2067336 + L2b LINE L2 3007 3299 -76 8 1515 363 305 0 0 chr9 122008912 122009066 -2067106 + (TAGG)n Simple_repeat Simple_repeat 3 156 0 1 1515 180 302 0 0 chr9 122009096 122009182 -2066990 + (CAGG)n Simple_repeat Simple_repeat 3 88 0 1 1515 519 303 0 0 chr9 122009194 122009513 -2066659 + (CAGG)n Simple_repeat Simple_repeat 1 319 0 1 1515 653 267 44 0 chr9 122009934 122010114 -2066058 + L1MD3 LINE L1 7783 7970 -25 1 1515 22 0 0 0 chr9 122010282 122010304 -2065868 + AT_rich Low_complexity Low_complexity 1 22 0 1 1515 304 291 31 86 chr9 122010699 122010827 -2065345 + RMER15 LTR ERVL 275 395 -180 1 1515 294 29 0 0 chr9 122010829 122010864 -2065308 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1515 202 174 0 42 chr9 122011808 122011856 -2064316 + CT-rich Low_complexity Low_complexity 1 46 0 2 1515 867 271 14 10 chr9 122012202 122012411 -2063761 + B3 SINE B2 7 216 0 2 1515 238 345 33 40 chr9 122012287 122012438 -2063734 - RMER12 LTR ERVK -444 878 729 2 1515 622 277 50 22 chr9 122013819 122014000 -2062172 + B3A SINE B2 1 186 -12 2 1515 1019 251 162 3 chr9 122015831 122016151 -2060021 + MTEb LTR MaLR 1 371 -8 2 1515 557 249 87 11 chr9 122017156 122017339 -2058833 - B3A SINE B2 0 198 2 2 1515 203 303 38 38 chr9 122017678 122017757 -2058415 - L2c LINE L2 -33 3354 3276 2 1515 249 297 50 25 chr9 122018537 122018658 -2057514 - L1MC5 LINE L1 -735 7226 7103 2 1515 432 200 0 0 chr9 122018659 122018764 -2057408 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1515 708 292 101 4 chr9 122019515 122019773 -2056399 + B4 SINE B4 1 283 -9 2 1515 1352 139 4 25 chr9 122020138 122020381 -2055791 + Lx2 LINE L1 6724 6961 -36 3 1515 575 217 81 24 chr9 122020381 122020504 -2055668 - ID_B1 SINE B4 -9 215 86 3 1515 225 233 51 76 chr9 122020514 122020593 -2055579 - MLT1E2 LTR MaLR 0 680 604 3 1515 438 338 126 33 chr9 122020599 122020813 -2055359 - MLT1E2 LTR MaLR -161 466 233 3 1515 275 234 97 42 chr9 122021020 122021185 -2054987 + L1MD LINE L1 2761 2934 -3212 3 1515 394 239 131 71 chr9 122021233 122021431 -2054741 + L1M4 LINE L1 3035 3244 -2902 3 1515 931 273 188 29 chr9 122021496 122022054 -2054118 + L1M4 LINE L1 3370 4016 -2130 3 1515 321 238 25 0 chr9 122022095 122022175 -2053997 + L1M4 LINE L1 4112 4193 -1953 3 1515 267 161 85 51 chr9 122022463 122022522 -2053650 + PB1D10 SINE Alu 42 102 -15 3 1515 216 175 0 0 chr9 122022545 122022585 -2053587 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 3 1515 897 148 38 54 chr9 122022718 122022903 -2053269 - B2_Mm2 SINE B2 -12 183 2 3 1515 1658 206 75 22 chr9 122023000 122023412 -2052760 - RLTR11A2 LTR ERVK -44 483 47 3 1515 253 257 0 41 chr9 122023443 122023516 -2052656 - RLTR11A2 LTR ERVK -457 70 1 3 1515 314 252 0 10 chr9 122023567 122023667 -2052505 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 1515 338 296 0 77 chr9 122024901 122025018 -2051154 + RSINE1 SINE B4 12 119 -46 4 1515 330 26 0 0 chr9 122025031 122025070 -2051102 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1515 327 49 0 0 chr9 122025338 122025379 -2050793 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4 1515 446 264 0 7 chr9 122025896 122026041 -2050131 + (TA)n Simple_repeat Simple_repeat 2 145 0 4 1515 21 71 0 0 chr9 122026385 122026427 -2049745 + GC_rich Low_complexity Low_complexity 1 42 0 4 1515 30 27 0 0 chr9 122026773 122026810 -2049362 + GC_rich Low_complexity Low_complexity 1 37 0 4 1515 225 232 125 0 chr9 122027768 122027824 -2048348 - MIRm SINE MIR -125 151 89 4 1516 1316 160 27 0 chr9 122028059 122028278 -2047894 - URR1B DNA MER1_type 0 225 1 4 1516 303 250 14 14 chr9 122028787 122028856 -2047316 + PB1D10 SINE Alu 25 93 -24 4 1516 417 241 143 25 chr9 122028933 122029052 -2047120 + B1F1 SINE Alu 16 148 -1 4 1516 261 0 0 0 chr9 122032605 122032634 -2043538 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 5 1516 269 250 206 28 chr9 122032636 122032743 -2043429 - RSINE1 SINE B4 -29 136 11 5 1516 321 153 0 0 chr9 122032755 122032827 -2043345 + T-rich Low_complexity Low_complexity 1 72 0 5 1516 1166 55 7 0 chr9 122032828 122032974 -2043198 - B1_Mus1 SINE Alu -1 147 1 5 1516 390 297 23 23 chr9 122034041 122034172 -2042000 - B4 SINE B4 -94 198 68 5 1516 829 236 38 127 chr9 122035440 122035731 -2040441 - Lx9 LINE L1 -370 7274 7010 5 1516 489 196 320 60 chr9 122035738 122035886 -2040286 + Lx9 LINE L1 7308 7471 -173 5 1516 201 74 0 0 chr9 122035886 122035913 -2040259 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1516 489 196 320 60 chr9 122035913 122036014 -2040158 + Lx9 LINE L1 7472 7622 -22 5 1516 3011 189 137 76 chr9 122036019 122036931 -2039241 - RMER17B LTR ERVK -15 943 1 5 1516 439 257 50 2 chr9 122038832 122038949 -2037223 + B1F1 SINE Alu 6 127 -20 5 1516 467 165 84 84 chr9 122038996 122039115 -2037057 + PB1D9 SINE Alu 1 119 -1 5 1516 423 277 55 50 chr9 122039453 122039635 -2036537 - B3A SINE B2 -15 183 1 6 1516 326 260 41 5 chr9 122039682 122039771 -2036401 - B1F2 SINE Alu -11 109 20 6 1516 230 322 77 17 chr9 122039801 122039918 -2036254 - MIR SINE MIR -131 131 8 6 1516 252 86 0 0 chr9 122040725 122040760 -2035412 + (CTGGGG)n Simple_repeat Simple_repeat 5 39 0 6 1516 292 306 0 0 chr9 122040760 122040832 -2035340 + ID4_ SINE ID 1 72 -11 6 1516 182 37 0 36 chr9 122041222 122041250 -2034922 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 6 1516 284 265 29 14 chr9 122041255 122041324 -2034848 - B4A SINE B4 -2 290 221 6 1516 239 236 314 17 chr9 122041360 122041476 -2034696 - RSINE1 SINE B4 -12 153 3 6 1516 410 299 80 65 chr9 122041483 122041683 -2034489 - B4A SINE B4 -89 203 1 6 1516 789 208 16 33 chr9 122042122 122042306 -2033866 + B2_Mm2 SINE B2 1 181 -14 6 1516 549 224 215 12 chr9 122042306 122042478 -2033694 - B3 SINE B2 -8 208 2 6 1516 21 36 0 0 chr9 122042486 122042514 -2033658 + AT_rich Low_complexity Low_complexity 1 28 0 7 1516 321 143 111 0 chr9 122042980 122043043 -2033129 + ID4 SINE ID 1 70 -13 7 1516 1770 252 66 111 chr9 122044089 122045423 -2030749 - RMER1B Other Other -2 1028 3 7 1516 222 187 110 4 chr9 122047120 122047181 -2028991 + MIRc SINE MIR 86 150 -126 7 1516 231 261 71 14 chr9 122047970 122048040 -2028132 + L1M5 LINE L1 5567 5640 -600 7 1516 318 87 0 0 chr9 122048042 122048088 -2028084 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1516 306 67 0 77 chr9 122048412 122048477 -2027695 + (TCC)n Simple_repeat Simple_repeat 2 61 0 7 1516 325 276 155 119 chr9 122048863 122049283 -2026889 - L1MEe LINE L1 -4418 436 2 7 1516 658 242 178 14 chr9 122050818 122051099 -2025073 + L1MD LINE L1 4166 4492 -1654 7 1516 281 264 14 0 chr9 122051330 122051402 -2024770 + L1MD LINE L1 5567 5639 -2356 7 1516 294 299 45 27 chr9 122051532 122051642 -2024530 + PB1D10 SINE Alu 6 117 0 7 1516 195 182 0 57 chr9 122052001 122052071 -2024101 + GA-rich Low_complexity Low_complexity 1 66 0 8 1516 194 33 67 0 chr9 122052738 122052768 -2023404 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 8 1516 496 248 27 95 chr9 122052826 122052973 -2023199 + ID_B1 SINE B4 13 149 -75 8 1516 453 250 22 0 chr9 122053149 122053241 -2022931 - PB1D10 SINE Alu -10 107 14 8 1516 286 340 21 0 chr9 122053160 122053254 -2022918 - ID_B1 SINE B4 -49 175 80 8 1516 198 0 0 0 chr9 122053379 122053401 -2022771 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1516 351 188 14 14 chr9 122053403 122053473 -2022699 - ID_B1 SINE B4 -8 216 147 8 1516 998 164 87 5 chr9 122054044 122054228 -2021944 - B3 SINE B2 -16 200 2 8 1516 361 271 0 0 chr9 122055364 122055449 -2020723 - PB1D10 SINE Alu -32 85 1 8 1516 483 133 0 52 chr9 122056356 122056530 -2019642 + (CATA)n Simple_repeat Simple_repeat 4 168 0 8 1516 249 325 0 0 chr9 122057411 122057491 -2018681 + (CA)n Simple_repeat Simple_repeat 1 80 0 9 1516 814 174 14 14 chr9 122057624 122057770 -2018402 + B1_Mus1 SINE Alu 3 148 0 9 1516 459 0 0 0 chr9 122057959 122058010 -2018162 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1516 318 50 0 0 chr9 122058459 122058499 -2017673 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1516 228 86 0 0 chr9 122058706 122058741 -2017431 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1516 333 244 13 0 chr9 122059425 122059503 -2016669 - ID4 SINE ID -3 80 2 9 1516 180 0 0 0 chr9 122060327 122060347 -2015825 + (TA)n Simple_repeat Simple_repeat 2 21 0 9 1516 321 68 0 0 chr9 122060368 122060412 -2015760 + (T)n Simple_repeat Simple_repeat 1 44 0 9 1516 481 323 87 78 chr9 122060801 122061123 -2015049 - ORR1E LTR MaLR -34 325 1 9 1516 910 261 164 3 chr9 122061123 122061429 -2014743 - MTE-int LTR MaLR -53 1527 1172 9 1516 1237 165 8 63 chr9 122061468 122061665 -2014507 + MTC LTR MaLR 8 202 -219 1 1516 228 35 0 0 chr9 122061665 122061694 -2014478 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1516 1237 165 8 63 chr9 122061694 122061748 -2014424 + MTC LTR MaLR 203 244 -177 1 1516 685 73 32 39 chr9 122061749 122061875 -2014297 + MTC LTR MaLR 185 304 -117 1 1516 342 325 109 55 chr9 122061797 122062109 -2014063 - MTE-int LTR MaLR -673 907 579 1 1516 553 302 56 5 chr9 122062226 122062422 -2013750 - MTE-int LTR MaLR -1370 210 5 1 1516 278 311 65 37 chr9 122062496 122062603 -2013569 - ORR1E LTR MaLR -214 145 36 1 1516 765 199 0 0 chr9 122062940 122063106 -2013066 + (TG)n Simple_repeat Simple_repeat 1 166 0 1 1516 494 344 38 48 chr9 122063123 122063416 -2012756 - B4A SINE B4 -1 291 2 1 1516 235 361 50 20 chr9 122063650 122063749 -2012423 - MER2 DNA MER2_type -8 337 236 1 1516 1127 262 129 22 chr9 122063753 122064116 -2012056 + MTD LTR MaLR 18 419 0 1 1516 415 154 297 0 chr9 122064508 122064599 -2011573 - ORR1D1 LTR MaLR 0 374 257 1 1516 471 207 145 8 chr9 122064590 122064676 -2011496 + B3 SINE B2 78 173 -43 1 1516 188 34 0 33 chr9 122064676 122064706 -2011466 + (CATA)n Simple_repeat Simple_repeat 3 31 0 1 1516 471 207 145 8 chr9 122064706 122064736 -2011436 + B3 SINE B2 174 209 -7 1 1516 336 102 0 0 chr9 122065260 122065309 -2010863 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1516 32 26 0 0 chr9 122065589 122065628 -2010544 + AT_rich Low_complexity Low_complexity 1 39 0 1 1516 796 194 44 0 chr9 122065656 122065816 -2010356 - B3A SINE B2 -31 167 1 1 1516 181 294 29 0 chr9 122067178 122067246 -2008926 + MIRc SINE MIR 170 239 -29 1 1516 445 275 265 11 chr9 122068321 122068608 -2007564 - L1M5 LINE L1 -3303 2843 2484 1 1516 948 38 113 0 chr9 122068644 122068777 -2007395 - B1_Mus1 SINE Alu 0 148 1 1 1516 812 292 33 14 chr9 122069691 122069906 -2006266 - ORR1E LTR MaLR -6 353 135 1 1516 312 27 0 0 chr9 122074480 122074517 -2001655 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1516 243 0 0 0 chr9 122074517 122074543 -2001629 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1516 351 274 11 54 chr9 122074573 122074758 -2001414 + (TATG)n Simple_repeat Simple_repeat 1 177 0 1 1516 232 375 0 0 chr9 122074686 122074798 -2001374 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1516 191 173 0 19 chr9 122074801 122074854 -2001318 + (TATG)n Simple_repeat Simple_repeat 4 55 0 1 1516 255 275 125 121 chr9 122075076 122075324 -2000848 - B4A SINE B4 -18 274 26 1 1516 204 200 0 0 chr9 122075605 122075645 -2000527 + GA-rich Low_complexity Low_complexity 1 40 0 1 1516 243 0 0 0 chr9 122077163 122077190 -1998982 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1516 702 261 113 67 chr9 122079892 122080192 -1995980 - MTE2b LTR MaLR -34 345 32 1 1516 955 263 89 14 chr9 122080192 122080474 -1995698 - MTE2b-int LTR MaLR 0 1580 1278 1 1516 1764 282 104 19 chr9 122080495 122081109 -1995063 - MTE2b-int LTR MaLR -913 667 2 1 1516 275 180 48 16 chr9 122081109 122081167 -1995005 - MTE2b LTR MaLR -19 360 301 1 1516 1021 181 39 10 chr9 122081380 122081586 -1994586 + B3 SINE B2 5 216 0 1 1516 303 327 93 37 chr9 122081612 122081774 -1994398 - L1M5 LINE L1 -3277 2869 2699 1 1516 181 286 41 0 chr9 122082432 122082481 -1993691 + MIRm SINE MIR 100 150 -126 1 1516 389 255 53 0 chr9 122088286 122088380 -1987792 - MER5B DNA MER1_type -74 104 6 1 1516 250 310 28 0 chr9 122088766 122088837 -1987335 - ID SINE ID -150 74 2 1 1516 2500 93 77 0 chr9 122090262 122090626 -1985546 - ORR1B1 LTR MaLR -2 392 1 1 1516 948 49 4 16 chr9 122090895 122091024 -1985148 - B1_Mus1 SINE Alu -1 147 17 1 1516 232 176 43 14 chr9 122093260 122093281 -1982891 + A-rich Low_complexity Low_complexity 4 24 0 1 1516 380 259 35 26 chr9 122093281 122093396 -1982776 + PB1D10 SINE Alu 1 116 -1 1 1516 232 176 43 14 chr9 122093396 122093443 -1982729 + A-rich Low_complexity Low_complexity 25 73 0 1 1516 544 206 59 0 chr9 122093964 122094066 -1982106 - PB1D10 SINE Alu -9 108 1 1 1516 380 277 182 39 chr9 122094468 122094622 -1981550 + MLT1L LTR MaLR 303 478 -132 1 1516 523 214 0 0 chr9 122095731 122095820 -1980352 + RLTR42 LTR ERVK 1 89 -150 1 1516 249 33 0 0 chr9 122095820 122095850 -1980322 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1516 459 0 0 0 chr9 122095850 122095900 -1980272 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1516 353 216 121 43 chr9 122095900 122095976 -1980196 + RLTR42 LTR ERVK 121 197 -42 1 1516 214 180 19 39 chr9 122096257 122096309 -1979863 + CT-rich Low_complexity Low_complexity 1 51 0 1 1516 365 243 14 0 chr9 122096310 122096384 -1979788 - PB1D10 SINE Alu -15 102 28 1 1516 363 177 61 20 chr9 122096755 122096853 -1979319 - L1MEc LINE L1 -1432 4887 4786 1 1516 261 247 227 22 chr9 122097314 122097591 -1978581 - L1MEc LINE L1 -5751 649 316 1 1516 457 294 10 0 chr9 122098802 122098904 -1977268 - PB1D10 SINE Alu 0 117 15 1 1516 338 354 9 9 chr9 122099284 122099398 -1976774 + MLT1A0 LTR MaLR 41 154 -211 1 1516 620 147 7 0 chr9 122099506 122099642 -1976530 + CT-rich Low_complexity Low_complexity 2 138 0 1 1516 360 0 0 0 chr9 122099642 122099682 -1976490 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1516 334 361 47 62 chr9 122099688 122099880 -1976292 + MLT1A0 LTR MaLR 148 336 -29 1 1516 257 307 0 0 chr9 122100426 122100501 -1975671 + GA-rich Low_complexity Low_complexity 4 78 0 1 1516 525 252 9 0 chr9 122100896 122101011 -1975161 - B1F SINE Alu 0 149 34 1 1516 283 271 129 0 chr9 122102172 122102257 -1973915 + PB1 SINE Alu 29 124 -3 1 1516 230 300 0 0 chr9 122102313 122102363 -1973809 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1516 464 161 32 21 chr9 122103436 122103531 -1972641 + PB1D10 SINE Alu 22 117 0 1 1516 271 282 63 71 chr9 122103867 122103993 -1972179 + MLT1F LTR MaLR 9 133 -415 1 1516 423 258 142 63 chr9 122104204 122104394 -1971778 - MLT1F LTR MaLR -14 546 342 1 1516 298 300 85 101 chr9 122104403 122104592 -1971580 + MER58A DNA MER1_type 39 224 0 1 1516 882 278 68 15 chr9 122104594 122104892 -1971280 - MLT1F LTR MaLR -243 326 1 1 1516 667 275 89 53 chr9 122106815 122107061 -1969111 - B4A SINE B4 -35 257 3 1 1516 1381 253 126 3 chr9 122107405 122107769 -1968403 + MTD LTR MaLR 3 411 -8 1 1516 225 242 0 0 chr9 122109046 122109108 -1967064 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1516 328 169 281 0 chr9 122109420 122109509 -1966663 - B3A SINE B2 -82 116 3 1 1516 410 274 0 31 chr9 122109710 122109808 -1966364 - B1_Mur2 SINE Alu -5 144 50 1 1516 612 0 0 0 chr9 122110436 122110504 -1965668 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1516 279 0 0 0 chr9 122112424 122112455 -1963717 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 1 1516 260 27 0 51 chr9 122112552 122112591 -1963581 + B1_Mur4 SINE Alu 105 141 -9 1 1516 225 65 0 0 chr9 122112591 122112622 -1963550 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1516 989 218 18 28 chr9 122113738 122113955 -1962217 - B3 SINE B2 0 216 2 1 1516 243 306 81 34 chr9 122114001 122114150 -1962022 + RMER15 LTR ERVL 405 560 -15 1 1516 219 293 0 65 chr9 122114185 122114309 -1961863 + G-rich Low_complexity Low_complexity 1 116 0 1 1516 277 276 79 0 chr9 122116405 122116481 -1959691 + ID4 SINE ID 2 83 0 1 1516 180 0 0 0 chr9 122116541 122116561 -1959611 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1516 1044 247 41 54 chr9 122116565 122116810 -1959362 - B4 SINE B4 0 292 42 1 1516 3425 35 2 2 chr9 122116810 122117206 -1958966 - MTA_Mm LTR MaLR 0 396 1 1 1516 1044 247 41 54 chr9 122117206 122117255 -1958917 - B4 SINE B4 -251 41 2 1 1516 491 269 89 28 chr9 122119047 122119261 -1956911 + L1MC LINE L1 3784 4010 -2136 1 1516 684 273 130 16 chr9 122119304 122119557 -1956615 + B4A SINE B4 5 286 -6 1 1516 501 225 0 119 chr9 122119569 122119771 -1956401 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1516 437 276 0 71 chr9 122119819 122120163 -1956009 + (CA)n Simple_repeat Simple_repeat 1 319 0 1 1516 443 258 0 96 chr9 122120175 122120372 -1955800 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1516 232 276 265 0 chr9 122120469 122120567 -1955605 + L1MD LINE L1 4039 4162 -1984 1 1516 348 261 23 116 chr9 122120792 122120965 -1955207 + RSINE1 SINE B4 5 161 -4 1 1516 471 225 53 60 chr9 122121439 122121590 -1954582 + B3A SINE B2 49 198 0 1 1516 269 303 56 28 chr9 122121805 122121985 -1954187 + L1ME1 LINE L1 5068 5252 -894 1 1516 293 295 119 69 chr9 122122041 122122679 -1953493 + L1ME1 LINE L1 5273 5942 -237 1 1516 731 275 194 37 chr9 122123558 122123939 -1952233 - ORR1E-int LTR MaLR -1139 441 1 1 1516 566 250 201 26 chr9 122123941 122124245 -1951927 - ORR1E LTR MaLR -2 357 1 1 1516 230 200 14 54 chr9 122124544 122124618 -1951554 + L1MD LINE L1 5697 5767 -2228 1 1516 353 306 142 32 chr9 122124637 122124694 -1951478 + L1MC2 LINE L1 6056 6114 -230 1 1516 1419 52 0 0 chr9 122124694 122125040 -1951132 + (CA)n Simple_repeat Simple_repeat 1 346 0 1 1516 353 306 142 32 chr9 122125040 122125233 -1950939 + L1MC2 LINE L1 6115 6336 -8 1 1516 195 42 0 0 chr9 122125388 122125412 -1950760 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1516 298 250 115 0 chr9 122126413 122126509 -1949663 + L1M5 LINE L1 5450 5556 -623 1 1516 1350 65 0 0 chr9 122126752 122126922 -1949250 + L1_Mus1 LINE L1 6398 6567 0 1 1516 521 239 220 6 chr9 122129307 122129475 -1946697 + B4A SINE B4 3 206 -86 1 1516 24 53 0 0 chr9 122129500 122129538 -1946634 + AT_rich Low_complexity Low_complexity 1 38 0 1 1516 571 254 166 0 chr9 122130362 122130543 -1945629 - Lx9 LINE L1 -914 6730 6520 1 1516 1843 259 143 46 chr9 122130541 122130719 -1945453 + Lx9 LINE L1 6735 6916 -728 1 1516 860 131 73 0 chr9 122130719 122130856 -1945316 - B1_Mus1 SINE Alu -1 147 1 1 1516 1843 259 143 46 chr9 122130856 122131389 -1944783 + Lx9 LINE L1 6917 7515 -129 1 1516 448 239 96 6 chr9 122131680 122131807 -1944365 - Lx9 LINE L1 -737 6907 6784 1 1516 299 212 0 12 chr9 122133676 122133744 -1942428 + GA-rich Low_complexity Low_complexity 2 69 0 1 1516 1141 106 0 11 chr9 122133744 122133926 -1942246 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1516 299 212 0 12 chr9 122133926 122133938 -1942234 + polypurine Low_complexity Low_complexity 70 81 0 1 1516 579 301 136 25 chr9 122135545 122135780 -1940392 + B4A SINE B4 26 286 -6 1 1516 221 290 29 0 chr9 122135869 122135938 -1940234 + (TATG)n Simple_repeat Simple_repeat 2 72 0 1 1516 641 296 75 43 chr9 122135941 122136195 -1939977 - B4A SINE B4 0 292 31 1 1516 996 23 8 15 chr9 122137023 122137156 -1939016 + (TCC)n Simple_repeat Simple_repeat 1 132 0 1 1516 420 20 0 0 chr9 122137585 122137634 -1938538 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1516 341 280 146 7 chr9 122139133 122139277 -1936895 + L1MD1 LINE L1 5276 5439 -920 2 1516 381 288 73 8 chr9 122139343 122139508 -1936664 + L1MD1 LINE L1 5597 5771 -588 2 1516 396 247 143 36 chr9 122139760 122139983 -1936189 + ORR1E LTR MaLR 55 301 -58 2 1516 596 80 10 0 chr9 122140088 122140188 -1935984 + (TG)n Simple_repeat Simple_repeat 1 101 0 2 1516 239 233 17 0 chr9 122140589 122140649 -1935523 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1516 366 156 0 59 chr9 122140649 122140717 -1935455 + HAL1-3A_ME LINE L1 1975 2038 -820 2 1516 230 323 50 0 chr9 122140757 122140856 -1935316 + L1MD1 LINE L1 6137 6240 -2 2 1516 268 319 0 0 chr9 122142790 122142859 -1933313 + MLT1B LTR MaLR 275 343 -47 2 1516 1007 141 141 0 chr9 122143429 122143627 -1932545 - URR1A DNA MER1_type 0 226 1 2 1516 722 200 22 29 chr9 122143706 122143845 -1932327 - B3 SINE B2 -77 139 2 2 1516 4032 149 29 25 chr9 122143979 122144668 -1931504 + RLTR17 LTR ERVK 1 692 0 2 1516 286 247 51 25 chr9 122144807 122144886 -1931286 - L1M4 LINE L1 -2048 4098 4018 2 1516 1395 34 85 0 chr9 122145064 122145241 -1930931 - B2_Mm1a SINE B2 0 193 2 2 1516 300 111 0 0 chr9 122145265 122145310 -1930862 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1516 1223 61 0 0 chr9 122145310 122145457 -1930715 - B1_Mus1 SINE Alu 0 148 2 2 1516 738 181 0 0 chr9 122146127 122146271 -1929901 + (TA)n Simple_repeat Simple_repeat 2 145 0 2 1516 22 0 0 0 chr9 122146721 122146743 -1929429 + AT_rich Low_complexity Low_complexity 1 22 0 2 1516 297 0 0 0 chr9 122147418 122147451 -1928721 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1516 231 36 0 0 chr9 122147451 122147478 -1928694 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1516 1270 104 0 11 chr9 122147603 122147627 -1928545 - B2_Mm2 SINE B2 -11 184 162 2 1516 189 0 0 0 chr9 122147627 122147648 -1928524 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2 1516 1270 104 0 11 chr9 122147648 122147807 -1928365 - B2_Mm2 SINE B2 -34 161 3 2 1516 389 237 56 35 chr9 122147830 122147974 -1928198 - B1F2 SINE Alu 0 149 3 2 1516 1318 98 16 11 chr9 122148172 122148357 -1927815 - B2_Mm2 SINE B2 -8 187 2 2 1516 1113 55 14 20 chr9 122149394 122149542 -1926630 + B1_Mus1 SINE Alu 2 148 0 2 1516 208 70 23 23 chr9 122149591 122149635 -1926537 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 2 1516 508 300 132 24 chr9 122150405 122150654 -1925518 + B4A SINE B4 1 276 -16 2 1516 374 94 0 15 chr9 122150874 122150939 -1925233 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1516 309 51 0 0 chr9 122151453 122151492 -1924680 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1516 628 144 7 46 chr9 122152368 122152521 -1923651 + GA-rich Low_complexity Low_complexity 2 148 0 2 1516 416 216 280 82 chr9 122153036 122153304 -1922868 - MTEa LTR MaLR -58 321 1 2 1516 328 291 85 126 chr9 122153340 122153611 -1922561 - Tigger13a DNA MER2_type -284 487 228 2 1516 440 227 23 0 chr9 122154428 122154516 -1921656 - B3A SINE B2 -108 90 1 2 1516 383 284 40 133 chr9 122155049 122155403 -1920769 - ORR1E LTR MaLR -22 357 7 2 1516 268 167 167 0 chr9 122155377 122155431 -1920741 - ORR1E LTR MaLR -289 90 28 2 1516 2564 159 75 56 chr9 122155538 122156112 -1920060 + RMER4B LTR ERVK 1 585 0 2 1516 30 45 0 0 chr9 122157822 122157866 -1918306 + AT_rich Low_complexity Low_complexity 1 44 0 2 1516 527 238 48 7 chr9 122157956 122158111 -1918061 + ID_B1 SINE B4 64 223 -1 2 1517 265 221 18 46 chr9 122159364 122159473 -1916699 + (CA)n Simple_repeat Simple_repeat 1 106 0 2 1517 198 0 0 0 chr9 122159527 122159549 -1916623 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1517 289 268 254 18 chr9 122161042 122161377 -1914795 - L1MDa LINE L1 -2976 3561 3148 2 1517 536 276 137 28 chr9 122161408 122161916 -1914256 - L1MDa LINE L1 -3505 3032 2452 2 1517 474 114 29 0 chr9 122162565 122162635 -1913537 + PB1D9 SINE Alu 23 94 -26 2 1517 407 315 56 7 chr9 122162712 122162856 -1913316 + RSINE1 SINE B4 3 153 -12 2 1517 422 18 18 0 chr9 122163024 122163079 -1913093 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1517 212 193 11 59 chr9 122165079 122165266 -1910906 + (TGAG)n Simple_repeat Simple_repeat 1 178 0 2 1517 356 148 16 0 chr9 122165278 122165339 -1910833 - HAL1-3A_ME LINE L1 -840 2018 1957 2 1517 254 314 83 102 chr9 122165580 122165796 -1910376 + B4 SINE B4 61 272 -20 2 1517 442 203 208 17 chr9 122166525 122166645 -1909527 + B1_Mur1 SINE Alu 2 144 -5 2 1517 855 70 0 0 chr9 122166648 122166763 -1909409 + (TGGA)n Simple_repeat Simple_repeat 1 115 0 2 1517 1016 263 60 25 chr9 122166917 122167198 -1908974 + B4A SINE B4 2 292 0 2 1517 787 210 32 78 chr9 122167218 122167435 -1908737 + B3 SINE B2 2 208 -8 2 1517 1174 68 0 0 chr9 122167801 122167947 -1908225 - B1_Mus2 SINE Alu 0 147 2 2 1517 240 331 111 35 chr9 122168443 122168615 -1907557 + L1MDb LINE L1 391 575 -5834 2 1517 234 0 0 0 chr9 122168890 122168916 -1907256 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1517 408 293 44 62 chr9 122169929 122169977 -1906195 - RSINE1 SINE B4 -6 159 108 2 1517 447 19 0 0 chr9 122169977 122170029 -1906143 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1517 408 293 44 62 chr9 122170029 122170140 -1906032 - RSINE1 SINE B4 -58 107 3 2 1517 458 262 46 18 chr9 122171332 122171441 -1904731 - B3 SINE B2 -8 208 97 2 1517 552 255 20 20 chr9 122171445 122171593 -1904579 - B3A SINE B2 -47 151 4 2 1517 963 110 14 0 chr9 122171785 122171930 -1904242 + B1_Mus1 SINE Alu 2 148 0 2 1517 421 130 21 11 chr9 122171932 122172025 -1904147 + A-rich Low_complexity Low_complexity 2 95 0 2 1517 312 200 117 0 chr9 122172047 122172107 -1904065 + ID4 SINE ID 16 82 -1 2 1517 618 247 44 25 chr9 122172337 122172495 -1903677 + B3A SINE B2 4 164 -34 2 1517 414 0 0 0 chr9 122172513 122172559 -1903613 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1517 1010 76 8 0 chr9 122173123 122173255 -1902917 + B1_Mus2 SINE Alu 3 135 -12 2 1517 333 0 0 0 chr9 122173257 122173294 -1902878 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 1517 201 154 0 0 chr9 122173295 122173334 -1902838 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 2 1517 478 194 294 14 chr9 122173561 122173707 -1902465 - B2_Mm2 SINE B2 -8 187 1 2 1517 310 186 26 54 chr9 122175713 122175801 -1900371 - MLT1A1 LTR MaLR -13 395 278 2 1517 420 291 58 0 chr9 122176690 122176793 -1899379 + PB1D7 SINE Alu 12 120 0 2 1517 306 73 0 0 chr9 122177241 122177282 -1898890 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1517 240 302 0 0 chr9 122178286 122178349 -1897823 + ID4 SINE ID 18 80 -3 2 1517 841 136 0 75 chr9 122179562 122179721 -1896451 - B1_Mur4 SINE Alu 0 150 4 2 1517 356 252 60 9 chr9 122181292 122181408 -1894764 + MER58A DNA MER1_type 77 198 -26 2 1517 854 273 49 25 chr9 122181899 122182184 -1893988 - B4A SINE B4 0 292 1 2 1517 232 250 0 0 chr9 122184965 122185013 -1891159 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1517 799 156 0 88 chr9 122185024 122185172 -1891000 - B1_Mur1 SINE Alu -2 147 13 2 1517 246 233 60 104 chr9 122185622 122185756 -1890416 + RLTR23 LTR ERV1 265 392 -38 2 1517 206 170 21 0 chr9 122185861 122185908 -1890264 + (TCTCTG)n Simple_repeat Simple_repeat 6 53 0 2 1517 259 313 60 0 chr9 122186306 122186456 -1889716 + RLTR4_MM-int LTR ERV1 599 757 -6844 2 1517 3125 26 10 5 chr9 122186650 122187036 -1889136 + RLTR10 LTR ERVK 1 388 -2 2 1517 636 48 16 160 chr9 122187036 122187161 -1889011 + RLTR10-int LTR ERVK 6 112 -6369 2 1517 233 274 0 0 chr9 122187161 122187212 -1888960 + RLTR27 LTR ERVK 220 270 -39 2 1517 6798 43 13 10 chr9 122187212 122188035 -1888137 + RLTR10-int LTR ERVK 173 998 -989 2 1517 380 232 62 39 chr9 122188099 122188229 -1887943 + RLTR10-int LTR ERVK 1462 1594 -5987 2 1517 8918 19 7 1 chr9 122188312 122189299 -1886873 + RLTR10-int LTR ERVK 992 1984 -3 2 1517 3299 23 10 5 chr9 122189301 122189687 -1886485 + RLTR10 LTR ERVK 1 388 -2 2 1517 938 305 89 24 chr9 122189869 122190373 -1885799 + RLTR4_MM-int LTR ERV1 1054 1590 -3473 2 1517 513 299 22 68 chr9 122190387 122190671 -1885501 + RLTR4_MM-int LTR ERV1 1812 2248 -5353 2 1517 2998 61 200 9 chr9 122190892 122191322 -1884850 + RLTR1B LTR ERV1 1 512 0 2 1517 1032 335 69 57 chr9 122191469 122192655 -1883517 + RLTR4_MM-int LTR ERV1 3180 4379 -3222 2 1517 267 152 0 0 chr9 122193863 122193909 -1882263 + CT-rich Low_complexity Low_complexity 4 49 0 2 1517 185 132 26 0 chr9 122194251 122194289 -1881883 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1517 270 106 0 0 chr9 122194566 122194613 -1881559 + (G)n Simple_repeat Simple_repeat 1 47 0 2 1517 462 269 50 16 chr9 122195387 122195508 -1880664 - MTEa LTR MaLR -2 377 253 2 1517 464 284 71 5 chr9 122195509 122195693 -1880479 + MTEb LTR MaLR 134 329 -50 2 1517 957 308 37 42 chr9 122196340 122196747 -1879425 + MTD LTR MaLR 1 405 -14 2 1517 292 310 0 0 chr9 122196829 122196900 -1879272 - 5S rRNA rRNA -50 71 1 2 1517 298 302 61 38 chr9 122197318 122197449 -1878723 + B1F SINE Alu 5 138 -11 2 1517 1088 112 44 11 chr9 122198468 122198649 -1877523 + B2_Mm2 SINE B2 1 187 -8 2 1517 641 261 114 10 chr9 122198757 122198958 -1877214 + B4A SINE B4 49 270 -22 2 1517 340 276 95 0 chr9 122200137 122200242 -1875930 + B1F1 SINE Alu 1 115 -34 2 1517 978 280 37 4 chr9 122200394 122200666 -1875506 + B4 SINE B4 4 284 -8 2 1517 248 70 0 23 chr9 122201059 122201103 -1875069 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1517 1301 188 221 15 chr9 122201227 122201552 -1874620 - MTD LTR MaLR -8 411 20 2 1517 264 91 0 0 chr9 122201565 122201609 -1874563 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1517 379 279 0 0 chr9 122201974 122202053 -1874119 + RSINE1 SINE B4 87 165 0 2 1517 223 277 156 106 chr9 122202335 122202553 -1873619 + B4A SINE B4 46 274 -18 2 1517 186 71 0 0 chr9 122202623 122202651 -1873521 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1517 255 195 0 0 chr9 122204433 122204474 -1871698 - ID4_ SINE ID -11 72 32 2 1517 558 268 3 29 chr9 122204534 122204677 -1871495 + PB1 SINE Alu 1 133 -16 2 1517 1135 245 139 64 chr9 122204690 122205078 -1871094 + MTD LTR MaLR 3 419 0 2 1517 1285 163 18 9 chr9 122205178 122205401 -1870771 + URR1B DNA MER1_type 1 225 0 3 1517 303 284 126 42 chr9 122205601 122205792 -1870380 - L1MEf LINE L1 -5990 210 4 3 1517 289 255 125 18 chr9 122205825 122205937 -1870235 + B4 SINE B4 10 133 -159 3 1517 499 181 166 171 chr9 122206222 122206409 -1869763 + B4 SINE B4 89 274 -18 3 1517 426 20 0 0 chr9 122206411 122206462 -1869710 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1517 38806 14 2 0 chr9 122206463 122211669 -1864503 + L1Md_A LINE L1 416 5586 -297 3 1517 8826 14 7 3 chr9 122211669 122212661 -1863511 + L1Md_A LINE L1 5587 6582 0 3 1517 308 24 24 0 chr9 122212666 122212707 -1863465 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1517 257 188 133 38 chr9 122212749 122212854 -1863318 - L1M LINE L1 -2453 5429 5315 3 1517 498 261 0 0 chr9 122213090 122213314 -1862858 + (TG)n Simple_repeat Simple_repeat 1 224 0 3 1517 249 330 0 32 chr9 122213314 122213408 -1862764 + MLT1A1 LTR MaLR 14 104 -304 3 1517 421 277 2 131 chr9 122213434 122213627 -1862545 + ORR1D1 LTR MaLR 46 214 -156 3 1517 180 0 0 0 chr9 122213868 122213888 -1862284 + (C)n Simple_repeat Simple_repeat 1 20 0 3 1517 689 295 63 44 chr9 122214422 122214674 -1861498 + LTR33 LTR ERVL 46 302 -213 3 1517 1510 177 146 61 chr9 122214728 122215071 -1861101 - ORR1C1 LTR MaLR -6 372 1 3 1517 525 104 0 0 chr9 122215146 122215223 -1860949 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 1517 936 162 0 0 chr9 122215235 122215383 -1860789 - B1_Mus1 SINE Alu 0 148 1 3 1517 462 190 38 114 chr9 122215383 122215412 -1860760 - MT2B LTR ERVL -447 154 136 3 1517 630 208 0 0 chr9 122215634 122215793 -1860379 + (CA)n Simple_repeat Simple_repeat 1 159 0 3 1517 779 201 145 0 chr9 122216088 122216247 -1859925 + B3A SINE B2 2 183 -15 3 1517 816 150 239 39 chr9 122216274 122216454 -1859718 - B3 SINE B2 0 216 1 3 1517 432 291 105 87 chr9 122216486 122216689 -1859483 + B4 SINE B4 2 224 -68 3 1517 213 94 0 0 chr9 122216689 122216721 -1859451 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1517 432 291 105 87 chr9 122216721 122216803 -1859369 + B4 SINE B4 225 292 0 3 1517 357 303 73 0 chr9 122217576 122217685 -1858487 - LTR40b LTR ERVL -1 461 345 3 1517 818 232 205 8 chr9 122217954 122218193 -1857979 + MTEa LTR MaLR 49 334 -45 3 1517 230 192 0 19 chr9 122218299 122218352 -1857820 + MTEa LTR MaLR 324 375 -4 3 1517 483 285 143 47 chr9 122219879 122220138 -1856034 - MLT1F1 LTR MaLR -23 546 228 3 1517 180 0 0 0 chr9 122220138 122220158 -1856014 + (C)n Simple_repeat Simple_repeat 1 20 0 3 1517 483 245 188 46 chr9 122220158 122220333 -1855839 - MLT1F1 LTR MaLR -342 227 7 3 1517 250 228 33 172 chr9 122220777 122220899 -1855273 + MT2A LTR ERVL 6 110 -423 3 1517 1089 262 163 6 chr9 122220809 122221128 -1855044 + MTD LTR MaLR 51 419 0 3 1517 2167 101 0 142 chr9 122221154 122221408 -1854764 - ORR1A2 LTR MaLR -1 326 107 3 1517 1137 82 7 0 chr9 122221408 122221555 -1854617 - B1_Mus1 SINE Alu 0 148 1 3 1517 2167 101 0 142 chr9 122221555 122221680 -1854492 - ORR1A2 LTR MaLR -221 106 1 3 1517 1452 39 0 0 chr9 122222131 122222337 -1853835 + (TG)n Simple_repeat Simple_repeat 1 206 0 3 1517 1502 133 16 210 chr9 122222366 122222795 -1853377 + ORR1A1 LTR MaLR 1 346 0 3 1517 736 264 26 0 chr9 122223245 122223438 -1852734 - B3A SINE B2 0 198 1 3 1517 183 363 11 21 chr9 122223695 122223788 -1852384 - MIR3 SINE MIR -48 160 69 3 1517 1050 229 5 27 chr9 122224051 122224082 -1852090 + B3 SINE B2 1 30 -186 3 1517 1928 144 168 19 chr9 122224082 122224456 -1851716 - RLTR23 LTR ERV1 0 430 1 3 1517 1050 229 5 27 chr9 122224456 122224644 -1851528 + B3 SINE B2 31 215 -1 3 1517 272 202 84 122 chr9 122225136 122225243 -1850929 - RSINE1 SINE B4 -41 124 22 3 1517 359 250 113 54 chr9 122225457 122225643 -1850529 - L1MC4a LINE L1 -1629 6253 6057 3 1517 1627 164 128 28 chr9 122226514 122226914 -1849258 + RMER10A LTR ERVL 1 440 -2 3 1517 528 199 231 69 chr9 122227385 122227731 -1848441 - RMER10A LTR ERVL -39 403 2 3 1517 2757 116 53 21 chr9 122227770 122228238 -1847934 + RLTR19A LTR ERVK 14 496 0 3 1517 351 0 0 0 chr9 122228376 122228415 -1847757 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1517 21 0 0 0 chr9 122229127 122229148 -1847024 + AT_rich Low_complexity Low_complexity 1 21 0 3 1517 259 327 32 13 chr9 122229155 122229313 -1846859 + L1M4c LINE L1 1658 1818 -4566 3 1517 1755 143 146 0 chr9 122229371 122229706 -1846466 + ORR1C2 LTR MaLR 1 384 0 3 1517 831 200 18 0 chr9 122229737 122229907 -1846265 + B3 SINE B2 3 175 -41 3 1517 375 23 0 0 chr9 122231326 122231370 -1844802 + (TGGGGG)n Simple_repeat Simple_repeat 3 46 0 3 1517 2031 73 52 13 chr9 122231664 122231971 -1844201 + ORR1A2 LTR MaLR 1 319 -8 3 1517 412 286 71 36 chr9 122232315 122232360 -1843812 + RMER2 LTR ERV1 334 377 -190 3 1517 207 0 0 0 chr9 122232360 122232383 -1843789 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1517 342 0 0 0 chr9 122232383 122232420 -1843752 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1517 412 286 71 36 chr9 122232420 122232598 -1843574 + RMER2 LTR ERV1 378 565 -2 3 1517 274 310 20 0 chr9 122232607 122232707 -1843465 + L1M4c LINE L1 4785 4886 -1496 3 1517 1363 301 113 10 chr9 122232758 122233463 -1842709 - L1MA5 LINE L1 -26 6274 5497 3 1517 4388 157 71 22 chr9 122233506 122234366 -1841806 + RMER19B LTR ERVK 1 902 0 3 1517 334 325 113 5 chr9 122234423 122234599 -1841573 + L1M4c LINE L1 5027 5223 -1159 3 1517 396 0 0 0 chr9 122234599 122234643 -1841529 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1517 334 325 113 5 chr9 122234643 122234670 -1841502 + L1M4c LINE L1 5224 5251 -1131 3 1517 758 266 80 147 chr9 122234707 122235122 -1841050 + MTD LTR MaLR 18 404 -15 3 1517 1076 107 18 0 chr9 122235141 122235309 -1840863 - URR1B DNA MER1_type -1 224 54 3 1517 1373 230 82 31 chr9 122235336 122235719 -1840453 + RLTR20A2 LTR ERVK 79 478 -100 3 1517 369 0 0 0 chr9 122235719 122235760 -1840412 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1517 1373 230 82 31 chr9 122235760 122235852 -1840320 + RLTR20A2 LTR ERVK 479 577 -1 3 1517 229 253 48 12 chr9 122236299 122236383 -1839789 - MTEb LTR MaLR 0 379 293 3 1517 452 265 93 64 chr9 122236592 122236903 -1839269 + RMER10A LTR ERVL 122 441 -1 3 1517 412 129 19 29 chr9 122237205 122237309 -1838863 + GA-rich Low_complexity Low_complexity 3 105 0 3 1517 1567 168 134 31 chr9 122237322 122237710 -1838462 - RMER10A LTR ERVL -8 434 7 3 1517 4487 12 2 0 chr9 122237711 122238203 -1837969 - MT2_Mm LTR ERVL 0 493 1 3 1517 321 0 0 0 chr9 122238203 122238241 -1837931 - MERVL-int LTR ERVL 0 5485 5448 3 1517 374 123 13 40 chr9 122238241 122238317 -1837855 - ORR1A3-int LTR MaLR -1323 640 567 3 1517 48838 16 0 0 chr9 122238317 122243688 -1832484 - MERVL-int LTR ERVL -114 5371 1 3 1517 4461 10 4 0 chr9 122243688 122244179 -1831993 - MT2_Mm LTR ERVL 0 493 1 3 1517 440 286 26 58 chr9 122244257 122244413 -1831759 - ID_B1 SINE B4 -7 217 67 3 1517 1113 68 0 26 chr9 122245035 122245186 -1830986 - B1_Mm SINE Alu 0 147 1 3 1517 449 279 126 36 chr9 122245242 122245409 -1830763 - B3A SINE B2 -16 182 1 3 1517 558 86 0 0 chr9 122245418 122245499 -1830673 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1517 398 273 30 10 chr9 122245502 122245602 -1830570 - B1F SINE Alu -26 123 22 3 1517 753 186 0 0 chr9 122245693 122245822 -1830350 - B1_Mur1 SINE Alu -15 134 6 3 1517 338 298 53 11 chr9 122245827 122245922 -1830250 - MTEb LTR MaLR -200 179 81 3 1517 254 182 0 0 chr9 122246129 122246173 -1829999 - L1MC3 LINE L1 -1722 6063 6020 3 1517 635 247 13 7 chr9 122246259 122246410 -1829762 + B3 SINE B2 55 206 -10 3 1517 465 19 0 0 chr9 122246512 122246566 -1829606 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3 1517 340 272 18 72 chr9 122247559 122247670 -1828502 - RSINE1 SINE B4 -7 158 54 3 1517 549 233 74 15 chr9 122247823 122247958 -1828214 + B1_Mur3 SINE Alu 5 147 -2 3 1517 63 57 0 0 chr9 122248009 122248114 -1828058 + AT_rich Low_complexity Low_complexity 1 105 0 3 1517 1169 56 7 0 chr9 122248290 122248433 -1827739 + B1_Mm SINE Alu 1 144 -3 3 1517 222 37 0 0 chr9 122248433 122248460 -1827712 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1517 242 308 77 41 chr9 122248664 122249030 -1827142 + L1_Mur3 LINE L1 3052 3430 -2713 3 1517 261 291 42 0 chr9 122249052 122249157 -1827015 + L1_Mur3 LINE L1 3469 3590 -324 3 1517 513 241 110 34 chr9 122249460 122249666 -1826506 + L1_Mur3 LINE L1 5342 5564 -736 3 1517 544 25 63 0 chr9 122249778 122249857 -1826315 + (TTCTCC)n Simple_repeat Simple_repeat 3 86 0 3 1517 641 209 76 79 chr9 122249857 122250185 -1825987 + RMER17C LTR ERVK 84 410 0 3 1517 398 284 22 36 chr9 122250185 122250324 -1825848 + L1_Mur3 LINE L1 5560 5696 -595 3 1517 247 257 139 0 chr9 122250323 122250424 -1825748 - L1MC LINE L1 -2608 5387 5273 3 1517 294 125 0 0 chr9 122250478 122250526 -1825646 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1517 406 246 85 0 chr9 122250657 122250787 -1825385 - L1MC LINE L1 -852 5294 5154 3 1517 333 0 0 0 chr9 122251244 122251281 -1824891 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1517 1175 261 130 49 chr9 122251333 122252050 -1824122 - L1MC LINE L1 -973 5173 4399 3 1517 192 25 0 91 chr9 122252066 122252110 -1824062 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1517 440 243 69 84 chr9 122252159 122252361 -1823811 - MTEa LTR MaLR -5 374 176 3 1517 723 273 18 50 chr9 122253441 122253661 -1822511 + B3A SINE B2 1 213 -3 3 1517 777 265 82 88 chr9 122253664 122254016 -1822156 - MTE2a LTR MaLR -29 350 1 3 1517 326 211 99 0 chr9 122254899 122254970 -1821202 - ID2 SINE ID -5 78 1 3 1517 181 109 43 0 chr9 122255204 122255250 -1820922 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1517 1411 76 5 5 chr9 122255807 122255993 -1820179 - B2_Mm1a SINE B2 -7 186 1 3 1517 642 90 9 26 chr9 122256059 122256173 -1819999 + (TTTC)n Simple_repeat Simple_repeat 4 115 0 3 1517 441 81 0 0 chr9 122256171 122256233 -1819939 + (CCCCCT)n Simple_repeat Simple_repeat 1 62 0 3 1517 1067 99 7 0 chr9 122256245 122256386 -1819786 - B1_Mus1 SINE Alu -6 142 1 3 1517 21 0 0 0 chr9 122256457 122256478 -1819694 + AT_rich Low_complexity Low_complexity 1 21 0 3 1517 2448 80 3 58 chr9 122257599 122257945 -1818227 + ORR1A2 LTR MaLR 1 327 0 3 1517 315 207 0 0 chr9 122258545 122258603 -1817569 + RSINE1 SINE B4 3 60 -105 3 1517 234 375 42 0 chr9 122258811 122258931 -1817241 + MLT1A1 LTR MaLR 19 143 -222 3 1517 279 277 161 0 chr9 122259018 122259148 -1817024 + MLT1A1 LTR MaLR 256 406 -2 3 1517 660 251 33 6 chr9 122259914 122260094 -1816078 - B3 SINE B2 -30 186 2 3 1517 459 198 169 31 chr9 122260107 122260237 -1815935 - B1_Mur2 SINE Alu -1 148 1 4 1517 234 128 0 0 chr9 122260339 122260378 -1815794 + (TGG)n Simple_repeat Simple_repeat 3 41 0 4 1517 25 0 0 0 chr9 122260824 122260849 -1815323 + GC_rich Low_complexity Low_complexity 1 25 0 4 1517 577 188 32 65 chr9 122261394 122261548 -1814624 - B1F2 SINE Alu 0 149 1 4 1517 285 305 0 12 chr9 122263182 122263265 -1812907 + MER63D DNA AcHobo 309 390 -671 4 1517 345 125 0 0 chr9 122263520 122263576 -1812596 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1517 605 245 132 30 chr9 122264540 122264805 -1811367 - B4A SINE B4 0 292 1 4 1517 259 348 76 25 chr9 122264805 122264819 -1811353 - B1_Mur3 SINE Alu -33 116 3 4 1517 260 233 85 85 chr9 122264819 122264913 -1811259 - 4.5SRNA scRNA scRNA 0 94 1 4 1517 379 263 0 0 chr9 122264841 122264917 -1811255 - ID_B1 SINE B4 -70 154 79 4 1517 428 265 0 25 chr9 122265702 122265822 -1810350 - PB1D10 SINE Alu 0 117 1 4 1517 462 321 44 0 chr9 122267645 122267782 -1808390 + ID_B1 SINE B4 82 224 0 4 1517 204 40 0 0 chr9 122267989 122268014 -1808158 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1517 1767 67 3 99 chr9 122268026 122268340 -1807832 - RLTR10B LTR ERVK 0 292 9 4 1517 7192 59 3 74 chr9 122268361 122269363 -1806809 - MMERVK10C-int LTR ERVK 0 7581 6651 4 1517 8621 45 6 3 chr9 122269354 122270371 -1805801 - MMERVK10C-int LTR ERVK -1771 5810 4791 4 1517 1996 60 0 2 chr9 122270365 122270800 -1805372 - MMERVK10C-int LTR ERVK -1100 887 652 4 1517 350 89 0 0 chr9 122270803 122270848 -1805324 - MMERVK10C-int LTR ERVK -6405 137 93 4 1517 248 273 0 11 chr9 122270848 122270937 -1805235 + T-rich Low_complexity Low_complexity 2 89 0 4 1517 2012 72 19 4 chr9 122271019 122271282 -1804890 - MMERVK10C-int LTR ERVK -7314 267 1 4 1517 2021 58 0 131 chr9 122271282 122271618 -1804554 - RLTR10B LTR ERVK 0 292 1 4 1517 24 32 0 0 chr9 122271821 122271852 -1804320 + AT_rich Low_complexity Low_complexity 1 31 0 4 1517 252 0 0 0 chr9 122272110 122272138 -1804034 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1517 236 230 68 0 chr9 122273170 122273244 -1802928 - ID4 SINE ID -4 79 1 4 1517 210 71 0 0 chr9 122273798 122273826 -1802346 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1517 246 250 0 30 chr9 122273958 122274024 -1802148 + CT-rich Low_complexity Low_complexity 4 67 0 4 1517 531 235 111 8 chr9 122274500 122274762 -1801410 - Charlie1b DNA MER1_type 0 523 235 4 1517 617 276 35 0 chr9 122274928 122275073 -1801099 + B3A SINE B2 21 170 -28 4 1517 207 88 0 0 chr9 122275117 122275151 -1801021 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 4 1517 1246 41 0 0 chr9 122275151 122275296 -1800876 - B1_Mm SINE Alu -1 146 2 4 1517 714 207 21 0 chr9 122277605 122277745 -1798427 - B1_Mur1 SINE Alu -5 144 2 4 1517 328 254 82 10 chr9 122278003 122278126 -1798046 - B1F SINE Alu -7 142 9 4 1517 2514 141 124 55 chr9 122278547 122279079 -1797093 + RMER4B LTR ERVK 17 585 0 4 1517 252 86 0 0 chr9 122279575 122279610 -1796562 + (CCCCG)n Simple_repeat Simple_repeat 5 39 0 4 1517 657 141 64 32 chr9 122279841 122279966 -1796206 - B1_Mur4 SINE Alu 0 150 22 4 1517 306 226 64 106 chr9 122279886 122279980 -1796192 - MT2B LTR ERVL -344 257 168 4 1517 915 154 0 7 chr9 122280416 122280560 -1795612 + B1_Mur4 SINE Alu 2 144 -6 4 1517 306 309 42 21 chr9 122281437 122281533 -1794639 + PB1D10 SINE Alu 14 111 -6 4 1517 219 328 15 30 chr9 122282291 122282357 -1793815 + PB1D7 SINE Alu 6 70 -50 4 1517 216 0 0 0 chr9 122283668 122283692 -1792480 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1517 447 19 0 0 chr9 122283791 122283843 -1792329 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1517 321 325 271 0 chr9 122285328 122285516 -1790656 - Tigger5 DNA MER2_type -2167 239 1 4 1517 743 219 7 0 chr9 122286277 122286414 -1789758 - B1_Mur1 SINE Alu -10 139 2 4 1517 21 36 0 0 chr9 122290042 122290070 -1786102 + AT_rich Low_complexity Low_complexity 1 28 0 4 1518 471 300 110 43 chr9 122291208 122291490 -1784682 - ORR1E LTR MaLR -8 351 51 4 1518 542 269 0 0 chr9 122292042 122292150 -1784022 - PB1D10 SINE Alu -8 109 2 4 1518 748 276 61 9 chr9 122292228 122292440 -1783732 + ID_B1 SINE B4 2 224 0 4 1518 279 0 0 0 chr9 122294543 122294574 -1781598 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1518 24 0 0 0 chr9 122294880 122294904 -1781268 + AT_rich Low_complexity Low_complexity 1 24 0 4 1518 2227 167 98 59 chr9 122296877 122297386 -1778786 - RLTR24 LTR ERV1 0 529 1 4 1518 315 275 67 42 chr9 122297913 122298083 -1778089 + MTEa LTR MaLR 246 419 0 4 1518 434 325 26 32 chr9 122298145 122298301 -1777871 - MER45A DNA Tip100 -20 158 4 4 1518 776 278 77 14 chr9 122299172 122299391 -1776781 + B4A SINE B4 1 232 -60 4 1518 494 239 11 0 chr9 122299391 122299479 -1776693 + B3 SINE B2 2 90 -126 4 1518 812 150 6 0 chr9 122299485 122299645 -1776527 + GA-rich Low_complexity Low_complexity 2 162 0 4 1518 1376 11 17 11 chr9 122299645 122299824 -1776348 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1518 333 0 0 0 chr9 122300134 122300171 -1776001 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1518 441 0 0 0 chr9 122300171 122300219 -1775953 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1518 400 261 34 0 chr9 122300237 122300325 -1775847 + RSINE1 SINE B4 43 133 -32 4 1518 396 0 0 0 chr9 122300325 122300369 -1775803 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1518 216 0 0 0 chr9 122300370 122300394 -1775778 + (CCA)n Simple_repeat Simple_repeat 1 24 0 4 1518 242 311 21 72 chr9 122300484 122300581 -1775591 - PB1D10 SINE Alu -20 97 6 4 1518 285 260 30 30 chr9 122300952 122301051 -1775121 - L1MD LINE L1 -2590 3556 3458 4 1518 6311 120 32 18 chr9 122301059 122301889 -1774283 + RMER17B LTR ERVK 1 820 -138 4 1518 438 75 0 0 chr9 122301889 122301956 -1774216 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1518 6311 120 32 18 chr9 122301956 122302070 -1774102 + RMER17B LTR ERVK 821 957 -1 4 1518 2038 110 12 42 chr9 122302145 122302476 -1773696 + ORR1A4 LTR MaLR 1 321 -8 4 1518 290 369 0 68 chr9 122302880 122303043 -1773129 + RMER10B LTR ERVL 247 398 0 4 1518 279 297 13 39 chr9 122303274 122303351 -1772821 + ID4_ SINE ID 8 82 -1 4 1518 2799 177 174 44 chr9 122303581 122304284 -1771888 + RMER12 LTR ERVK 424 1217 -105 4 1518 401 173 13 0 chr9 122304674 122304749 -1771423 + B3A SINE B2 5 80 -118 4 1518 255 291 19 46 chr9 122305036 122305144 -1771028 + L1M5 LINE L1 5560 5664 -460 4 1518 375 125 0 0 chr9 122305727 122305799 -1770373 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1518 206 128 0 41 chr9 122305807 122305856 -1770316 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1518 932 186 49 78 chr9 122305885 122306089 -1770083 - B3A SINE B2 0 198 1 4 1518 225 245 38 0 chr9 122308681 122308734 -1767438 + RSINE1 SINE B4 1 55 -110 4 1518 1252 103 59 11 chr9 122309055 122309241 -1766931 + B2_Mm2 SINE B2 1 195 0 4 1518 414 279 18 9 chr9 122309265 122309377 -1766795 + PB1D9 SINE Alu 1 113 -7 4 1518 256 323 31 10 chr9 122309444 122309541 -1766631 - MIRb SINE MIR -31 237 139 4 1518 304 74 109 18 chr9 122310593 122310648 -1765524 - HAL1-3A_ME LINE L1 -826 2032 1973 4 1518 242 200 50 34 chr9 122310674 122310793 -1765379 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 1518 2795 15 95 6 chr9 122310794 122311131 -1765041 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1518 54911 32 17 4 chr9 122311131 122317521 -1758651 - IAPEz-int LTR ERVK 0 6481 8 4 1518 2795 15 95 6 chr9 122317521 122317858 -1758314 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1518 258 232 36 7 chr9 122317860 122317999 -1758173 + (TG)n Simple_repeat Simple_repeat 2 144 0 4 1518 685 215 0 0 chr9 122318358 122318479 -1757693 + ID_B1 SINE B4 82 202 -22 4 1518 303 322 0 0 chr9 122318490 122318580 -1757592 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 1518 310 169 77 0 chr9 122319416 122319481 -1756691 - ID4_ SINE ID -11 72 3 4 1518 1802 164 58 55 chr9 122320447 122320846 -1755326 + Lx4B LINE L1 6655 7054 -4 4 1518 397 358 46 49 chr9 122321252 122321537 -1754635 + LTR16C LTR ERVL 206 489 0 4 1518 180 111 0 0 chr9 122321601 122321628 -1754544 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 1518 1296 245 20 87 chr9 122321646 122321930 -1754242 + MTEa LTR MaLR 1 266 -113 4 1518 1733 194 119 0 chr9 122321930 122322301 -1753871 + MTD LTR MaLR 5 419 0 4 1518 1296 245 20 87 chr9 122322301 122322418 -1753754 + MTEa LTR MaLR 267 375 -4 4 1518 789 218 80 11 chr9 122322622 122322798 -1753374 - B3A SINE B2 -5 193 6 4 1518 1097 98 0 9 chr9 122322939 122323165 -1753007 + (TTTC)n Simple_repeat Simple_repeat 1 223 0 4 1518 967 234 9 14 chr9 122323419 122323636 -1752536 + B3 SINE B2 1 216 0 4 1518 1104 137 76 5 chr9 122323664 122323848 -1752324 + B3 SINE B2 5 201 -15 4 1518 1005 128 0 0 chr9 122324053 122324319 -1751853 + (CA)n Simple_repeat Simple_repeat 1 266 0 4 1518 319 219 128 16 chr9 122324374 122324499 -1751673 + L1MD1 LINE L1 6104 6242 0 4 1518 282 318 91 35 chr9 122324509 122324708 -1751464 + L1ME3A LINE L1 5689 5898 -275 4 1518 304 209 43 29 chr9 122325068 122325137 -1751035 - B3A SINE B2 -122 76 7 4 1518 754 278 53 40 chr9 122325143 122325368 -1750804 - B4 SINE B4 -63 229 2 4 1518 201 74 0 0 chr9 122325478 122325505 -1750667 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1518 518 284 55 88 chr9 122327016 122327296 -1748876 + ORR1E LTR MaLR 1 261 -109 4 1518 1251 206 0 0 chr9 122327717 122327931 -1748241 - B3 SINE B2 -2 214 1 4 1518 249 318 91 34 chr9 122328004 122328092 -1748080 - MER58B DNA MER1_type -15 326 234 4 1518 749 228 93 56 chr9 122328940 122329154 -1747018 + ID_B1 SINE B4 3 224 0 4 1518 194 0 39 0 chr9 122331039 122331065 -1745107 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 1518 617 263 12 49 chr9 122332376 122332540 -1743632 + B3A SINE B2 41 198 0 5 1518 271 254 0 0 chr9 122332540 122332611 -1743561 - L1ME3A LINE L1 -10 6163 6093 5 1518 590 324 38 34 chr9 122332824 122333086 -1743086 - B4A SINE B4 0 292 30 5 1518 900 206 48 29 chr9 122333289 122333499 -1742673 + ID_B1 SINE B4 3 216 -8 5 1518 21 0 0 0 chr9 122333690 122333711 -1742461 + AT_rich Low_complexity Low_complexity 1 21 0 5 1518 440 191 76 11 chr9 122334711 122334838 -1741334 + MTEb LTR MaLR 227 371 -48 5 1518 409 288 30 68 chr9 122335303 122335490 -1740682 - B3A SINE B2 -4 191 1 5 1518 2843 75 50 23 chr9 122335703 122336099 -1740073 - MTB_Mm LTR MaLR 0 407 1 5 1518 334 270 54 9 chr9 122336377 122336489 -1739683 - MER5A1 DNA MER1_type -8 158 42 5 1518 229 322 74 113 chr9 122336619 122336955 -1739217 - L2b LINE L2 -1 3374 3052 5 1518 624 329 82 22 chr9 122337076 122337413 -1738759 + MLT1E1A LTR MaLR 262 679 -1 5 1518 564 130 0 0 chr9 122339875 122339967 -1736205 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 1518 214 297 36 52 chr9 122341372 122341495 -1734677 + L2c LINE L2 3034 3154 -272 5 1518 198 0 0 0 chr9 122342368 122342390 -1733782 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1518 240 345 12 12 chr9 122343427 122343512 -1732660 - LTR16E2 LTR ERVL -221 347 263 5 1518 851 273 110 63 chr9 122343967 122344366 -1731806 - MTD LTR MaLR -1 418 1 5 1518 202 182 0 0 chr9 122344432 122344465 -1731707 + C-rich Low_complexity Low_complexity 2 34 0 5 1518 862 246 85 50 chr9 122344699 122344769 -1731403 - B4 SINE B4 0 292 220 5 1518 381 43 0 0 chr9 122344769 122344816 -1731356 + (CTTG)n Simple_repeat Simple_repeat 2 48 0 5 1518 862 246 85 50 chr9 122344816 122345027 -1731145 - B4 SINE B4 -73 219 1 5 1518 524 281 68 15 chr9 122345097 122345313 -1730859 + MIR SINE MIR 34 254 -8 5 1518 673 262 189 106 chr9 122345811 122346161 -1730011 + MTE2a LTR MaLR 1 379 0 5 1518 222 233 0 0 chr9 122346243 122346286 -1729886 + A-rich Low_complexity Low_complexity 1 43 0 5 1518 490 212 6 45 chr9 122346286 122346464 -1729708 + G-rich Low_complexity Low_complexity 5 175 0 5 1518 281 128 150 25 chr9 122346466 122346546 -1729626 + MLT1A1 LTR MaLR 255 344 -64 5 1518 363 337 117 40 chr9 122346886 122347211 -1728961 + L1M5 LINE L1 4691 5040 -1106 5 1518 2289 11 114 0 chr9 122347231 122347493 -1728679 + RLTR10B LTR ERVK 1 292 0 5 1518 2912 36 7 140 chr9 122347905 122348355 -1727817 + RLTR10 LTR ERVK 1 390 0 5 1518 16372 22 5 1 chr9 122348366 122350303 -1725869 + RLTR10-int LTR ERVK 41 1984 -3 5 1518 2912 36 7 140 chr9 122350305 122350755 -1725417 + RLTR10 LTR ERVK 1 390 0 5 1518 2154 19 4 4 chr9 122350766 122351027 -1725145 + RLTR10-int LTR ERVK 41 301 -1686 5 1518 609 261 70 47 chr9 122351393 122351735 -1724437 + L1MDb LINE L1 873 1222 -5187 5 1518 436 274 183 26 chr9 122351831 122352104 -1724068 + L1MDb LINE L1 4277 4592 -1814 5 1518 546 63 0 0 chr9 122352326 122352405 -1723767 + (TC)n Simple_repeat Simple_repeat 1 79 0 5 1518 189 0 0 0 chr9 122352766 122352787 -1723385 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1518 1067 193 96 0 chr9 122352936 122353133 -1723039 - B3 SINE B2 0 216 1 5 1518 232 146 0 24 chr9 122353346 122353388 -1722784 + ORR1D1 LTR MaLR 334 374 0 5 1518 494 359 57 60 chr9 122353391 122353723 -1722449 - MamGypLTR1d LTR Gypsy -132 681 351 5 1518 342 67 0 0 chr9 122353828 122353873 -1722299 + (TTTTC)n Simple_repeat Simple_repeat 1 45 0 5 1518 2041 117 12 51 chr9 122353962 122354295 -1721877 - RLTRETN_Mm LTR ERVK 0 322 3 5 1518 1502 192 172 108 chr9 122355089 122355590 -1720582 - MT2A LTR ERVL 0 533 1 5 1518 216 0 0 0 chr9 122355632 122355656 -1720516 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1518 422 279 20 20 chr9 122357079 122357327 -1718845 + G-rich Low_complexity Low_complexity 1 248 0 5 1518 185 142 0 110 chr9 122357331 122357458 -1718714 + (GGGTG)n Simple_repeat Simple_repeat 4 116 0 5 1518 183 156 0 0 chr9 122357495 122357527 -1718645 + CT-rich Low_complexity Low_complexity 4 35 0 5 1518 279 79 0 0 chr9 122357655 122357693 -1718479 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1518 321 100 0 0 chr9 122358015 122358065 -1718107 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1518 754 269 98 27 chr9 122358125 122358381 -1717791 - B4A SINE B4 -18 274 1 5 1518 2009 165 138 3 chr9 122358413 122358784 -1717388 + MTC LTR MaLR 1 421 0 5 1518 346 315 11 0 chr9 122358924 122359016 -1717156 + B1F SINE Alu 1 93 -56 5 1518 378 0 0 0 chr9 122359026 122359068 -1717104 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1518 216 273 121 0 chr9 122359158 122359224 -1716948 + L2 LINE L2 51 124 -3295 5 1518 185 139 23 0 chr9 122359399 122359442 -1716730 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1518 219 289 51 26 chr9 122359539 122359617 -1716555 + L3 LINE CR1 4396 4475 -14 5 1518 698 301 87 51 chr9 122360122 122360434 -1715738 - ORR1E LTR MaLR -8 351 29 5 1518 246 303 40 0 chr9 122360846 122360922 -1715250 - ID4 SINE ID -2 81 3 5 1518 211 358 188 26 chr9 122362037 122362229 -1713943 - L4 LINE RTE -180 1849 1627 5 1518 184 277 0 0 chr9 122362264 122362311 -1713861 + MIRb SINE MIR 114 160 -108 5 1518 1298 168 35 0 chr9 122362375 122362578 -1713594 + B3 SINE B2 2 211 -5 5 1518 192 40 0 0 chr9 122362710 122362735 -1713437 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1518 739 271 26 0 chr9 122362756 122362907 -1713265 + RSINE1 SINE B4 2 156 -9 5 1518 645 227 114 0 chr9 122363111 122363243 -1712929 - B1_Mur2 SINE Alu -1 148 2 5 1518 860 278 72 19 chr9 122363429 122363693 -1712479 + MTEb LTR MaLR 3 280 -99 5 1518 538 230 20 61 chr9 122363690 122363838 -1712334 + MTEb LTR MaLR 232 373 -6 5 1518 1277 201 5 0 chr9 122364066 122364290 -1711882 + URR1B DNA MER1_type 1 225 0 5 1518 911 277 46 82 chr9 122364433 122364822 -1711350 - MTEa LTR MaLR -4 375 1 5 1518 591 295 51 19 chr9 122365219 122365433 -1710739 - Charlie1a DNA MER1_type -695 760 540 5 1518 255 308 65 21 chr9 122365431 122365510 -1710662 + PB1D7 SINE Alu 22 106 -14 5 1518 207 0 0 0 chr9 122365510 122365533 -1710639 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1518 255 308 65 21 chr9 122365533 122365546 -1710626 + PB1D7 SINE Alu 107 118 -2 5 1518 514 223 17 4 chr9 122365746 122365978 -1710194 + (TG)n Simple_repeat Simple_repeat 1 235 0 5 1518 396 222 11 38 chr9 122366026 122366209 -1709963 + (TATG)n Simple_repeat Simple_repeat 1 178 0 5 1518 1098 256 44 0 chr9 122366216 122366489 -1709683 - B4 SINE B4 -6 286 2 5 1518 3196 60 139 0 chr9 122366576 122366993 -1709179 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1518 192 77 0 0 chr9 122367806 122367832 -1708340 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1518 356 302 33 44 chr9 122367869 122368049 -1708123 + (CATG)n Simple_repeat Simple_repeat 1 178 0 5 1518 471 295 121 22 chr9 122368335 122368567 -1707605 + Charlie4 DNA MER1_type 21 275 -1686 5 1518 589 231 14 34 chr9 122368745 122368893 -1707279 - B1_Mur1 SINE Alu -2 147 3 5 1518 291 318 68 57 chr9 122369207 122369369 -1706803 - MLT1G LTR MaLR -378 177 12 5 1518 599 237 227 12 chr9 122369595 122369851 -1706321 + MTEa LTR MaLR 23 333 -46 5 1518 328 366 79 24 chr9 122370249 122370414 -1705758 + L1MEd LINE L1 550 723 -5396 5 1518 411 284 89 13 chr9 122370448 122370605 -1705567 + B4A SINE B4 2 170 -122 5 1518 530 314 112 11 chr9 122370606 122370964 -1705208 + L1_Mur3 LINE L1 3924 4317 -1563 5 1518 269 267 11 11 chr9 122370971 122371062 -1705110 + L1M2 LINE L1 4595 4685 -1458 5 1518 495 0 0 0 chr9 122371131 122371186 -1704986 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1518 226 299 26 0 chr9 122371323 122371400 -1704772 + L1_Rod LINE L1 5127 5205 -642 5 1518 382 254 42 69 chr9 122371400 122371428 -1704744 + B4 SINE B4 69 206 -84 5 1518 522 236 9 35 chr9 122371428 122371542 -1704630 + B1_Mur1 SINE Alu 6 116 -33 5 1518 495 334 22 7 chr9 122371571 122371811 -1704361 + L1M2 LINE L1 5348 5591 -588 5 1518 495 157 0 0 chr9 122371813 122371902 -1704270 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 5 1518 255 226 0 0 chr9 122371904 122371957 -1704215 + GA-rich Low_complexity Low_complexity 2 54 0 5 1518 375 303 33 33 chr9 122371959 122372143 -1704029 + L1M2 LINE L1 5595 5778 -513 5 1518 903 228 104 0 chr9 122372154 122372347 -1703825 + ID_B1 SINE B4 9 221 -3 5 1518 276 321 140 18 chr9 122372244 122372348 -1703824 - YREP_Mm Unknown Unknown -1526 286 176 5 1518 657 0 0 0 chr9 122372348 122372421 -1703751 + (GGGA)n Simple_repeat Simple_repeat 3 75 0 5 1518 276 321 140 18 chr9 122372421 122372487 -1703685 - YREP_Mm Unknown Unknown -1637 175 96 5 1518 246 244 50 25 chr9 122372487 122372567 -1703605 + Lx8 LINE L1 5815 5896 -1577 5 1518 1908 227 27 7 chr9 122372691 122373099 -1703073 - MTD LTR MaLR -2 417 2 5 1518 621 76 0 0 chr9 122373113 122373205 -1702967 + (GA)n Simple_repeat Simple_repeat 1 92 0 5 1518 1003 155 7 0 chr9 122373369 122373517 -1702655 + B1_Mur3 SINE Alu 1 149 0 5 1518 198 191 0 0 chr9 122373518 122373560 -1702612 + A-rich Low_complexity Low_complexity 1 42 0 5 1518 342 282 214 48 chr9 122373583 122374179 -1701993 + L1MEc LINE L1 1055 1685 -4730 5 1518 275 329 25 12 chr9 122374421 122374501 -1701671 + MER91B DNA Tip100 100 180 -10 5 1518 221 30 61 0 chr9 122375516 122375549 -1700623 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 5 1518 454 331 0 24 chr9 122375829 122375956 -1700216 + ID_B1 SINE B4 84 207 -17 5 1518 348 217 0 0 chr9 122376015 122376107 -1700065 + GA-rich Low_complexity Low_complexity 3 94 0 5 1518 253 194 60 0 chr9 122376135 122376202 -1699970 - L1MEf LINE L1 -5219 981 911 5 1518 354 208 85 31 chr9 122376197 122376326 -1699846 - L1MEc LINE L1 -3219 3102 2967 5 1518 453 319 90 17 chr9 122376706 122377262 -1698910 - L1MEc LINE L1 -3628 2687 2098 5 1518 374 208 118 45 chr9 122377465 122377626 -1698546 - MTEa LTR MaLR -14 405 251 5 1518 387 105 0 0 chr9 122377628 122377685 -1698487 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1518 824 287 14 28 chr9 122377685 122377900 -1698272 - MTEa LTR MaLR -163 216 5 5 1518 345 324 197 32 chr9 122377974 122378223 -1697949 - L1MEc LINE L1 -4771 1737 1448 5 1518 354 260 160 66 chr9 122378191 122378372 -1697800 - L1MEc LINE L1 -5217 1185 988 5 1518 318 148 0 0 chr9 122378415 122378469 -1697703 + (TCC)n Simple_repeat Simple_repeat 1 54 0 6 1518 700 182 83 8 chr9 122378469 122378602 -1697570 - B1_Mur2 SINE Alu -6 143 1 6 1518 376 302 67 123 chr9 122378604 122379050 -1697122 - L1MEc LINE L1 -5425 977 557 5 1518 2429 203 84 14 chr9 122379095 122379675 -1696497 + RCHARR1 DNA MER1_type 1 621 -353 6 1518 798 240 74 10 chr9 122379662 122379864 -1696308 - B3 SINE B2 0 216 2 6 1518 1381 256 80 2 chr9 122379864 122380217 -1695955 + RCHARR1 DNA MER1_type 591 974 0 6 1518 405 256 30 20 chr9 122380448 122380548 -1695624 - PB1D10 SINE Alu -6 111 14 6 1518 538 256 183 6 chr9 122380669 122380838 -1695334 - B3 SINE B2 -5 211 13 6 1518 457 244 99 0 chr9 122380928 122381059 -1695113 + RMER30 DNA MER1_type 8 151 -51 6 1518 543 181 57 0 chr9 122381114 122381217 -1694955 - B3 SINE B2 0 216 108 6 1518 1863 118 11 4 chr9 122381217 122381497 -1694675 - RLTR11A LTR ERVK 0 528 247 6 1518 266 196 17 35 chr9 122381504 122381562 -1694610 - B3 SINE B2 -119 97 41 6 1518 247 360 58 0 chr9 122382402 122382591 -1693581 - L1MA5 LINE L1 -48 6252 6053 6 1518 243 0 0 0 chr9 122382842 122382869 -1693303 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1518 355 197 79 0 chr9 122383437 122383513 -1692659 + ID4_ SINE ID 2 83 0 6 1518 1232 213 119 29 chr9 122383553 122383897 -1692275 + MTE2a LTR MaLR 1 375 -4 6 1518 332 304 55 60 chr9 122385790 122385972 -1690200 + LTR50 LTR ERVL 493 673 -122 6 1518 247 230 68 0 chr9 122386077 122386151 -1690021 + LTR50 LTR ERVL 714 792 -3 6 1518 371 187 79 0 chr9 122386306 122386445 -1689727 + (TCTA)n Simple_repeat Simple_repeat 1 150 0 6 1518 234 105 0 0 chr9 122386598 122386636 -1689536 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 6 1518 281 240 36 107 chr9 122389134 122389218 -1686954 + RSINE1 SINE B4 1 78 -87 6 1518 2899 69 45 10 chr9 122392206 122392603 -1683569 - RLTR10A LTR ERVK 0 411 1 6 1518 241 298 168 20 chr9 122392713 122392915 -1683257 - LTR33A_ LTR ERVL -5 526 295 6 1518 913 214 43 19 chr9 122393703 122393913 -1682259 - B3 SINE B2 -1 215 1 6 1518 666 276 134 101 chr9 122393917 122394275 -1681897 - MTEa LTR MaLR -9 370 1 6 1518 537 247 50 128 chr9 122394332 122394550 -1681622 - RMER30 DNA MER1_type 0 202 2 6 1518 248 364 26 43 chr9 122394565 122394680 -1681492 - MLT1H LTR MaLR -326 223 111 6 1518 422 339 36 21 chr9 122394709 122394873 -1681299 + ORR1E LTR MaLR 11 168 -202 6 1518 2225 89 5 126 chr9 122394878 122394932 -1681240 + ORR1A2 LTR MaLR 1 54 -273 6 1518 1219 75 0 0 chr9 122394932 122395078 -1681094 + B1_Mus1 SINE Alu 2 147 -1 6 1518 2225 89 5 126 chr9 122395078 122395109 -1681063 + ORR1A2 LTR MaLR 55 55 -272 6 1518 231 36 0 0 chr9 122395109 122395137 -1681035 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 6 1518 996 75 0 0 chr9 122395137 122395270 -1680902 + (GAGAA)n Simple_repeat Simple_repeat 2 135 0 6 1518 2225 89 5 126 chr9 122395270 122395554 -1680618 + ORR1A2 LTR MaLR 55 326 -1 6 1518 310 212 0 0 chr9 122396517 122396583 -1679589 + B4 SINE B4 1 66 -226 6 1518 332 174 11 32 chr9 122396585 122396680 -1679492 + GA-rich Low_complexity Low_complexity 5 97 0 6 1518 518 286 35 44 chr9 122396682 122396899 -1679273 + B4 SINE B4 90 292 0 6 1518 389 184 25 19 chr9 122398073 122398234 -1677938 + (CA)n Simple_repeat Simple_repeat 2 163 0 6 1518 592 182 17 11 chr9 122398292 122398470 -1677702 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1518 687 88 0 0 chr9 122398515 122398628 -1677544 + (TC)n Simple_repeat Simple_repeat 1 113 0 6 1518 330 281 69 23 chr9 122398667 122398798 -1677374 - MamRep605 Unknown Unknown -708 168 32 6 1518 480 225 45 0 chr9 122399101 122399212 -1676960 - PB1D10 SINE Alu -1 116 1 6 1518 289 167 13 13 chr9 122400299 122400378 -1675794 + (TG)n Simple_repeat Simple_repeat 1 79 0 6 1518 320 267 13 13 chr9 122400383 122400459 -1675713 - ID4_ SINE ID -6 77 2 6 1518 284 291 89 11 chr9 122400468 122400559 -1675613 - PB1D10 SINE Alu -5 112 22 6 1518 336 111 0 0 chr9 122400572 122400635 -1675537 + (T)n Simple_repeat Simple_repeat 1 63 0 6 1518 441 0 0 0 chr9 122400839 122400888 -1675284 + (CCCCCA)n Simple_repeat Simple_repeat 6 54 0 6 1518 859 280 20 0 chr9 122401172 122401372 -1674800 + ID_B1 SINE B4 2 205 -19 6 1518 255 269 75 19 chr9 122402407 122402513 -1673659 + L1MCa LINE L1 49 160 -6348 6 1518 318 319 17 8 chr9 122402642 122402762 -1673410 + MLT1A0 LTR MaLR 31 151 -214 6 1518 232 336 58 80 chr9 122402787 122403043 -1673129 - MTEb LTR MaLR -20 359 96 6 1518 588 276 28 40 chr9 122404088 122404265 -1671907 + B4A SINE B4 108 282 -10 6 1518 707 134 21 7 chr9 122404281 122404424 -1671748 + GA-rich Low_complexity Low_complexity 1 145 0 6 1518 2012 117 8 79 chr9 122404623 122404976 -1671196 - ORR1A4 LTR MaLR 0 329 2 6 1518 592 294 132 12 chr9 122404982 122405233 -1670939 - RMER15 LTR ERVL -22 553 273 6 1518 255 244 75 43 chr9 122405226 122405320 -1670852 - RMER15 LTR ERVL -413 162 66 6 1518 270 0 0 0 chr9 122405356 122405386 -1670786 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1518 405 0 0 0 chr9 122406216 122406261 -1669911 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1518 304 329 142 7 chr9 122406272 122406413 -1669759 + MIRb SINE MIR 26 185 -83 6 1518 960 176 101 5 chr9 122407275 122407426 -1668746 + B3 SINE B2 6 166 -50 6 1518 234 0 0 0 chr9 122407426 122407452 -1668720 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1518 351 0 0 0 chr9 122407452 122407490 -1668682 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1518 960 176 101 5 chr9 122407490 122407526 -1668646 + B3 SINE B2 167 210 -6 6 1518 441 314 71 13 chr9 122407580 122407735 -1668437 + MTEa LTR MaLR 56 219 -160 6 1518 389 327 82 19 chr9 122408211 122408417 -1667755 - HAL1 LINE L1 -906 1601 1383 6 1518 820 225 19 0 chr9 122408476 122408636 -1667536 - B3 SINE B2 -5 211 49 6 1518 622 256 0 8 chr9 122409173 122409307 -1666865 + MLT1A0 LTR MaLR 233 365 0 6 1518 707 191 136 0 chr9 122411699 122411846 -1664326 + ID_B1 SINE B4 2 168 -56 6 1518 1462 177 75 29 chr9 122411846 122412154 -1664018 - MTD LTR MaLR 0 419 98 6 1518 404 143 0 16 chr9 122412213 122412277 -1663895 + ID_B1 SINE B4 162 224 0 6 1518 630 49 0 0 chr9 122412302 122412384 -1663788 + (CAGAG)n Simple_repeat Simple_repeat 5 86 0 6 1518 180 279 23 0 chr9 122412721 122412764 -1663408 + L3 LINE CR1 4423 4466 -23 6 1518 407 263 234 2 chr9 122413048 122413235 -1662937 + MIR SINE MIR 1 224 -38 6 1518 390 236 0 0 chr9 122413955 122414099 -1662073 + (TG)n Simple_repeat Simple_repeat 1 144 0 6 1518 327 273 0 0 chr9 122414113 122414384 -1661788 + (TG)n Simple_repeat Simple_repeat 1 271 0 6 1518 506 227 109 63 chr9 122414395 122414569 -1661603 - B3A SINE B2 -16 182 1 6 1518 312 238 0 0 chr9 122414579 122414642 -1661530 - MIRc SINE MIR -112 156 94 6 1518 256 118 0 0 chr9 122414643 122414677 -1661495 + MLT1D LTR MaLR 1 34 -471 6 1518 351 318 79 0 chr9 122414780 122414906 -1661266 - ORR1E LTR MaLR -223 136 1 6 1518 595 282 23 60 chr9 122414930 122415188 -1660984 + MTEa LTR MaLR 109 379 0 6 1518 254 167 125 45 chr9 122415240 122415328 -1660844 + MLT1D LTR MaLR 115 209 -296 6 1518 183 321 18 0 chr9 122415533 122415589 -1660583 - MIRb SINE MIR -186 82 26 6 1518 1179 117 0 0 chr9 122416029 122416286 -1659886 + (CA)n Simple_repeat Simple_repeat 1 257 0 6 1518 646 260 93 0 chr9 122416587 122416737 -1659435 + RSINE1 SINE B4 2 165 0 6 1518 297 0 0 0 chr9 122416783 122416816 -1659356 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1518 255 152 0 0 chr9 122416911 122416957 -1659215 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1518 878 295 98 36 chr9 122418135 122418472 -1657700 + MTEa LTR MaLR 18 375 -4 6 1518 186 128 0 0 chr9 122418472 122418511 -1657661 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1518 998 175 5 90 chr9 122419260 122419461 -1656711 + URR1B DNA MER1_type 42 225 0 6 1518 415 246 30 23 chr9 122419535 122419668 -1656504 - LTR33A_ LTR ERVL -82 449 316 6 1518 324 0 0 0 chr9 122420196 122420232 -1655940 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1518 279 0 0 0 chr9 122420597 122420628 -1655544 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1518 532 172 11 11 chr9 122420753 122420847 -1655325 - B4A SINE B4 -63 229 136 6 1519 252 217 0 0 chr9 122422348 122422394 -1653778 - B1_Mur1 SINE Alu -8 141 96 6 1519 1182 260 55 4 chr9 122422415 122422689 -1653483 - B4 SINE B4 -2 290 3 6 1519 288 0 0 0 chr9 122423127 122423159 -1653013 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1519 595 196 0 14 chr9 122423159 122423299 -1652873 + GA-rich Low_complexity Low_complexity 3 140 0 6 1519 553 190 0 11 chr9 122424647 122424823 -1651349 + (TG)n Simple_repeat Simple_repeat 1 174 0 6 1519 213 94 0 0 chr9 122424853 122424885 -1651287 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1519 297 0 0 0 chr9 122424885 122424918 -1651254 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1519 814 187 29 7 chr9 122426116 122426256 -1649916 - B1_Mur2 SINE Alu -6 143 1 6 1519 596 208 52 30 chr9 122427414 122427548 -1648624 + B3 SINE B2 10 146 -70 6 1519 369 0 0 0 chr9 122427561 122427602 -1648570 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1519 1163 75 0 14 chr9 122427611 122427759 -1648413 + B1_Mm SINE Alu 2 147 0 6 1519 270 0 0 0 chr9 122427809 122427839 -1648333 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1519 638 241 11 110 chr9 122427901 122428083 -1648089 + RSINE1 SINE B4 2 165 0 6 1519 370 180 84 33 chr9 122428627 122428718 -1647454 + MLT1A0 LTR MaLR 275 361 -4 6 1519 296 190 0 12 chr9 122429168 122429248 -1646924 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1519 302 266 32 155 chr9 122429249 122429436 -1646736 - RSINE1 SINE B4 0 165 2 6 1519 275 206 8 143 chr9 122430242 122430361 -1645811 + B4 SINE B4 190 292 0 6 1519 212 167 21 0 chr9 122430367 122430415 -1645757 + GA-rich Low_complexity Low_complexity 3 51 0 6 1519 446 315 8 50 chr9 122431564 122431768 -1644404 + B3A SINE B2 26 214 -2 7 1519 21 36 0 0 chr9 122431788 122431816 -1644356 + AT_rich Low_complexity Low_complexity 1 28 0 7 1519 287 237 66 25 chr9 122431935 122432056 -1644116 - HAL1 LINE L1 -354 2153 2028 7 1519 272 345 36 18 chr9 122432826 122432994 -1643178 + L1_Mur3 LINE L1 5699 5869 -11 7 1519 1296 160 5 19 chr9 122433077 122433293 -1642879 + B3 SINE B2 4 216 0 7 1519 296 241 132 0 chr9 122433460 122433543 -1642629 + Tigger5 DNA MER2_type 2312 2405 -1 7 1519 338 192 0 60 chr9 122433674 122433757 -1642415 + B3A SINE B2 12 89 -109 7 1519 214 311 126 63 chr9 122433765 122433940 -1642232 + L2c LINE L2 3185 3370 -17 7 1519 21 57 0 0 chr9 122434012 122434047 -1642125 + AT_rich Low_complexity Low_complexity 1 35 0 7 1519 976 217 57 50 chr9 122434107 122434388 -1641784 - B4 SINE B4 -8 284 2 7 1519 207 122 24 24 chr9 122434890 122434932 -1641240 + CT-rich Low_complexity Low_complexity 4 45 0 7 1519 226 327 29 128 chr9 122434973 122435145 -1641027 + MER121 Unknown Unknown 43 197 -215 7 1519 288 0 0 0 chr9 122436620 122436652 -1639520 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1519 208 231 138 0 chr9 122436708 122436773 -1639399 - MIRc SINE MIR -117 151 78 7 1519 799 21 0 0 chr9 122437104 122437197 -1638975 + B1_Mm SINE Alu 43 135 -12 7 1519 225 0 0 0 chr9 122437198 122437223 -1638949 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1519 1106 249 34 44 chr9 122438244 122438538 -1637634 + B4 SINE B4 1 291 -1 7 1519 381 256 179 53 chr9 122438887 122439077 -1637095 + MER2 DNA MER2_type 130 343 -2 7 1519 524 277 99 0 chr9 122439173 122439314 -1636858 + RSINE1 SINE B4 11 165 0 7 1519 1287 79 0 0 chr9 122439662 122439906 -1636266 + (TGGA)n Simple_repeat Simple_repeat 1 244 0 7 1519 354 209 34 19 chr9 122440413 122440506 -1635666 - ID4_ SINE ID -51 101 4 7 1519 355 270 100 29 chr9 122442316 122442526 -1633646 + RMER12 LTR ERVK 770 994 -328 7 1519 439 173 0 61 chr9 122442538 122442686 -1633486 + (TATG)n Simple_repeat Simple_repeat 3 141 0 7 1519 443 220 0 28 chr9 122442737 122442952 -1633220 + (TATATG)n Simple_repeat Simple_repeat 1 208 0 7 1519 608 212 179 54 chr9 122442952 122443211 -1632961 - B4A SINE B4 0 292 2 7 1519 372 258 62 0 chr9 122445026 122445123 -1631049 + PB1D10 SINE Alu 3 105 -12 7 1519 26 30 0 0 chr9 122445123 122445156 -1631016 + AT_rich Low_complexity Low_complexity 1 33 0 7 1519 14197 69 18 3 chr9 122445715 122448334 -1627838 - L1VL2 LINE L1 -625 2990 333 7 1519 211 297 0 15 chr9 122448371 122448436 -1627736 + GA-rich Low_complexity Low_complexity 1 64 0 7 1519 242 349 47 0 chr9 122448878 122448964 -1627208 + MER45A DNA Tip100 80 169 -9 7 1519 533 266 108 28 chr9 122449701 122449914 -1626258 - RMER15 LTR ERVL -12 563 334 7 1519 238 156 22 0 chr9 122449919 122449964 -1626208 - RMER15 LTR ERVL -128 447 402 7 1519 248 174 0 0 chr9 122450303 122450349 -1625823 - RMER15 LTR ERVL -128 447 402 7 1519 233 196 20 0 chr9 122450431 122450482 -1625690 - RMER15 LTR ERVL -128 447 396 7 1519 237 176 20 0 chr9 122450818 122450869 -1625303 - RMER15 LTR ERVL -128 447 396 7 1519 229 147 190 50 chr9 122450870 122450970 -1625202 - RMER15 LTR ERVL -128 447 334 7 1519 266 109 0 21 chr9 122451464 122451511 -1624661 - RMER15 LTR ERVL -128 447 402 7 1519 228 211 158 0 chr9 122451516 122451611 -1624561 - RMER15 LTR ERVL -128 447 338 7 1519 231 174 0 0 chr9 122451620 122451666 -1624506 - RMER15 LTR ERVL -128 447 402 7 1519 237 176 20 0 chr9 122452033 122452084 -1624088 - RMER15 LTR ERVL -128 447 396 7 1519 229 147 190 50 chr9 122452085 122452185 -1623987 - RMER15 LTR ERVL -128 447 334 7 1519 226 152 0 21 chr9 122452418 122452465 -1623707 - RMER15 LTR ERVL -128 447 402 7 1519 253 152 0 0 chr9 122453296 122453342 -1622830 - RMER15 LTR ERVL -128 447 402 7 1519 238 156 22 0 chr9 122453347 122453392 -1622780 - RMER15 LTR ERVL -128 447 402 7 1519 266 109 0 21 chr9 122453397 122453444 -1622728 - RMER15 LTR ERVL -128 447 402 7 1519 253 152 0 0 chr9 122454226 122454272 -1621900 - RMER15 LTR ERVL -128 447 402 7 1519 238 156 22 0 chr9 122454277 122454322 -1621850 - RMER15 LTR ERVL -128 447 402 7 1519 266 109 0 21 chr9 122454327 122454374 -1621798 - RMER15 LTR ERVL -128 447 402 7 1519 293 109 0 0 chr9 122455074 122455120 -1621052 - RMER15 LTR ERVL -128 447 402 7 1519 645 244 45 6 chr9 122455206 122455363 -1620809 + MTD LTR MaLR 12 174 -245 7 1519 22 56 0 0 chr9 122456042 122456078 -1620094 + AT_rich Low_complexity Low_complexity 1 36 0 7 1519 1079 238 5 0 chr9 122456078 122456288 -1619884 - B3 SINE B2 -5 211 1 7 1519 297 283 50 8 chr9 122456307 122456428 -1619744 + LTR16C LTR ERVL 351 476 -13 7 1519 1200 219 145 0 chr9 122456580 122456877 -1619295 + MTE2a LTR MaLR 34 373 -6 7 1519 810 324 50 47 chr9 122457790 122458133 -1618039 - MT2A LTR ERVL -4 529 186 7 1519 306 0 0 0 chr9 122458875 122458909 -1617263 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1519 1154 236 88 49 chr9 122460546 122460911 -1615261 + MTEa LTR MaLR 1 379 0 7 1519 733 65 0 18 chr9 122461367 122461477 -1614695 + (TCC)n Simple_repeat Simple_repeat 2 109 0 7 1519 264 354 95 26 chr9 122461624 122461740 -1614432 - MLT1H LTR MaLR -170 379 256 7 1519 304 317 106 0 chr9 122461946 122462069 -1614103 + MER58A DNA MER1_type 2 137 -87 7 1519 574 175 62 0 chr9 122462073 122462170 -1614002 + B3 SINE B2 14 116 -100 7 1519 653 257 13 7 chr9 122462176 122462325 -1613847 + B3A SINE B2 31 180 -18 7 1519 1376 90 5 0 chr9 122462342 122462530 -1613642 + B2_Mm1a SINE B2 1 189 -4 7 1519 793 336 79 30 chr9 122462558 122463557 -1612615 - L1MC4 LINE L1 -1817 4397 3350 7 1519 474 33 0 0 chr9 122463573 122463633 -1612539 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1519 217 307 26 13 chr9 122463882 122463958 -1612214 - B4 SINE B4 -203 89 13 7 1519 269 217 309 12 chr9 122464080 122464164 -1612008 - PB1D10 SINE Alu -8 109 1 7 1519 1682 26 0 0 chr9 122464568 122464761 -1611411 - L1_Mus1 LINE L1 0 6567 6375 7 1519 408 296 125 84 chr9 122464864 122465255 -1610917 + MLT1A1 LTR MaLR 1 407 -1 7 1519 329 348 67 34 chr9 122465494 122465762 -1610410 - L1MC4 LINE L1 -3822 2393 2117 7 1519 301 204 50 79 chr9 122467163 122467264 -1608908 - MTEa LTR MaLR -22 357 260 7 1519 2065 71 3 37 chr9 122467264 122467558 -1608614 + ORR1A2 LTR MaLR 1 284 -43 7 1519 1577 16 0 61 chr9 122467558 122467755 -1608417 + B2_Mm1a SINE B2 2 186 -7 7 1519 1188 50 0 0 chr9 122467786 122467926 -1608246 + B1_Mm SINE Alu 2 141 -6 7 1519 828 277 85 30 chr9 122467933 122468252 -1607920 - MTEb LTR MaLR -43 336 1 7 1519 215 353 59 0 chr9 122468651 122468719 -1607453 + L2b LINE L2 3299 3370 -5 7 1519 757 201 13 34 chr9 122469068 122469217 -1606955 - B1_Mur1 SINE Alu 0 149 4 7 1519 207 100 0 0 chr9 122469324 122469354 -1606818 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1519 996 236 84 84 chr9 122469367 122469704 -1606468 + ORR1D2 LTR MaLR 1 375 -4 7 1519 1430 288 46 53 chr9 122470033 122470072 -1606100 - RMER15-int LTR ERVL -288 4711 4680 7 1519 1247 196 118 60 chr9 122470072 122470093 -1606079 + ORR1D2 LTR MaLR 3 23 -347 7 1519 459 0 0 0 chr9 122470093 122470144 -1606028 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1519 1247 196 118 60 chr9 122470144 122470470 -1605702 + ORR1D2 LTR MaLR 24 369 -1 7 1519 1430 288 46 53 chr9 122470470 122470999 -1605173 - RMER15-int LTR ERVL -320 4679 4147 7 1519 501 291 18 42 chr9 122471063 122471228 -1604944 - RSINE1 SINE B4 -2 163 3 7 1519 1576 299 90 28 chr9 122471283 122471927 -1604245 - RMER15-int LTR ERVL -3335 1664 981 7 1519 545 280 32 5 chr9 122472018 122472205 -1603967 - RMER15-int LTR ERVL -4141 858 667 7 1519 1004 320 71 17 chr9 122472199 122472619 -1603553 - RMER15-int LTR ERVL -4462 537 95 7 1519 405 0 0 0 chr9 122472697 122472742 -1603430 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 7 1519 959 146 12 0 chr9 122472744 122472915 -1603257 + GA-rich Low_complexity Low_complexity 4 176 0 7 1519 294 29 0 0 chr9 122473012 122473047 -1603125 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1519 1236 240 35 97 chr9 122473157 122473565 -1602607 + L1MD2 LINE L1 2738 3135 -3011 7 1519 606 271 71 145 chr9 122473565 122473876 -1602296 + B4 SINE B4 1 288 -4 7 1519 1236 240 35 97 chr9 122473876 122474063 -1602109 + L1MD2 LINE L1 3136 3296 -2850 7 1519 895 199 35 55 chr9 122474338 122474540 -1601632 - B3A SINE B2 0 198 1 7 1519 361 268 114 47 chr9 122474546 122474906 -1601266 + L1MD2 LINE L1 3373 3756 -2390 7 1519 313 304 130 57 chr9 122475020 122475307 -1600865 + L1MD2 LINE L1 4000 4308 -1838 7 1519 582 272 26 47 chr9 122475307 122475500 -1600672 - B3A SINE B2 -8 190 2 7 1519 313 304 130 57 chr9 122475500 122475805 -1600367 + L1MD2 LINE L1 4309 4608 -1538 7 1519 312 27 0 0 chr9 122475805 122475842 -1600330 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1519 313 304 130 57 chr9 122475842 122476050 -1600122 + L1MD2 LINE L1 4609 4859 -1287 7 1519 333 0 0 0 chr9 122476068 122476105 -1600067 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1519 290 299 124 62 chr9 122476143 122476353 -1599819 + L1MD2 LINE L1 5059 5281 -865 7 1519 371 302 88 39 chr9 122476412 122476855 -1599317 + L1MD2 LINE L1 5290 5773 -469 7 1519 233 179 0 18 chr9 122477006 122477063 -1599109 + L1MD2 LINE L1 5894 5949 -410 7 1519 823 205 29 112 chr9 122477264 122477506 -1598666 + ID_B1 SINE B4 1 222 -2 7 1519 300 70 0 0 chr9 122477538 122477581 -1598591 + L1MD2 LINE L1 6296 6338 -21 7 1519 378 0 0 0 chr9 122479635 122479677 -1596495 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1519 432 0 0 0 chr9 122479937 122479985 -1596187 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1519 22 0 0 0 chr9 122481537 122481559 -1594613 + GC_rich Low_complexity Low_complexity 1 22 0 7 1519 324 0 0 0 chr9 122482660 122482696 -1593476 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1519 351 0 0 0 chr9 122482982 122483021 -1593151 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1519 378 0 0 0 chr9 122483021 122483062 -1593110 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1519 562 13 27 0 chr9 122483196 122483271 -1592901 + (TA)n Simple_repeat Simple_repeat 2 78 0 7 1519 252 0 0 0 chr9 122485007 122485035 -1591137 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1519 396 0 0 0 chr9 122485280 122485324 -1590848 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1519 219 204 0 0 chr9 122485327 122485381 -1590791 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1519 230 291 64 64 chr9 122485429 122485517 -1590655 + B1F2 SINE Alu 1 88 -61 7 1519 315 0 0 0 chr9 122485517 122485552 -1590620 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1519 230 291 64 64 chr9 122485552 122485573 -1590599 + B1F2 SINE Alu 89 110 -39 7 1519 21 0 0 0 chr9 122486874 122486895 -1589277 + AT_rich Low_complexity Low_complexity 1 21 0 7 1519 24 0 0 0 chr9 122487763 122487787 -1588385 + AT_rich Low_complexity Low_complexity 1 24 0 7 1519 458 288 0 0 chr9 122487805 122487916 -1588256 + PB1D7 SINE Alu 3 113 -7 7 1519 496 229 0 56 chr9 122487925 122488050 -1588122 + PB1D9 SINE Alu 3 120 0 7 1519 607 319 6 30 chr9 122488068 122488236 -1587936 + B4 SINE B4 129 292 0 7 1519 661 231 7 58 chr9 122488666 122488804 -1587368 - RSINE1 SINE B4 0 165 35 7 1519 548 277 154 28 chr9 122488862 122489044 -1587128 + B4A SINE B4 6 210 -82 8 1519 813 245 110 72 chr9 122490187 122490451 -1585721 + B4 SINE B4 2 275 -17 8 1519 470 279 98 22 chr9 122491366 122491549 -1584623 + B4A SINE B4 3 199 -93 8 1519 209 59 59 0 chr9 122491748 122491782 -1584390 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 8 1519 23 33 0 0 chr9 122491815 122491845 -1584327 + AT_rich Low_complexity Low_complexity 1 30 0 8 1519 231 72 69 35 chr9 122495967 122496025 -1580147 + T-rich Low_complexity Low_complexity 2 61 0 8 1519 1707 227 60 0 chr9 122496155 122496508 -1579664 - MTE2b LTR MaLR -2 377 4 8 1519 305 314 32 16 chr9 122496679 122496805 -1579367 + MIRb SINE MIR 20 147 -121 8 1519 222 118 0 0 chr9 122498338 122498372 -1577800 + (TCTCC)n Simple_repeat Simple_repeat 1 34 0 8 1519 388 230 9 115 chr9 122498940 122499053 -1577119 + ID_B1 SINE B4 124 224 0 8 1519 282 239 32 73 chr9 122499587 122499683 -1576489 + PB1D10 SINE Alu 35 125 -2 8 1519 225 0 0 0 chr9 122501444 122501469 -1574703 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1519 396 0 0 0 chr9 122501469 122501512 -1574660 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1519 972 171 95 28 chr9 122503011 122503222 -1572950 - URR1B DNA MER1_type 0 225 1 3 1519 617 86 11 0 chr9 122503815 122503908 -1572264 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 4 1519 350 183 28 19 chr9 122504060 122504166 -1572006 + CT-rich Low_complexity Low_complexity 1 107 0 5 1519 239 241 45 18 chr9 122505146 122505256 -1570916 + (TA)n Simple_repeat Simple_repeat 2 114 0 6 1519 455 261 33 16 chr9 122507633 122507754 -1568418 + B4 SINE B4 168 290 -2 7 1519 309 345 186 31 chr9 122508872 122509340 -1566832 + L2a LINE L2 2815 3368 -7 8 1519 307 275 81 40 chr9 122510569 122510717 -1565455 + YREP_Mm Unknown Unknown 153 306 -1506 9 1519 811 176 15 0 chr9 122510591 122510727 -1565445 - ID_B1 SINE B4 -3 221 84 1 1519 620 266 97 0 chr9 122511061 122511215 -1564957 + B3 SINE B2 2 170 -46 1 1519 473 0 18 0 chr9 122511215 122511272 -1564900 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1519 360 0 0 0 chr9 122511274 122511314 -1564858 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1519 339 169 0 0 chr9 122511607 122511678 -1564494 + CT-rich Low_complexity Low_complexity 3 73 0 1 1519 1554 228 78 17 chr9 122511915 122512272 -1563900 + MTE2b LTR MaLR 1 379 0 1 1519 355 272 105 0 chr9 122513412 122513526 -1562646 + MIRc SINE MIR 114 239 -29 1 1519 310 276 130 20 chr9 122513682 122513782 -1562390 - HAL1-3A_ME LINE L1 -458 2400 2290 1 1519 281 244 0 140 chr9 122514467 122514567 -1561605 - MIR SINE MIR -132 130 45 1 1519 648 189 0 0 chr9 122515384 122515527 -1560645 + CT-rich Low_complexity Low_complexity 2 144 0 1 1519 303 93 0 0 chr9 122515825 122515868 -1560304 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1519 261 0 0 0 chr9 122515876 122515905 -1560267 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1519 765 248 6 6 chr9 122515918 122516080 -1560092 - RSINE1 SINE B4 0 165 4 2 1519 243 0 0 0 chr9 122516117 122516144 -1560028 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1519 314 278 104 15 chr9 122516623 122516758 -1559414 + B1F1 SINE Alu 1 147 -2 2 1519 283 346 14 4 chr9 122516765 122516867 -1559305 + ID4_ SINE ID 3 104 -48 2 1519 369 0 0 0 chr9 122516994 122517035 -1559137 + (TTG)n Simple_repeat Simple_repeat 3 43 0 2 1519 1265 127 7 0 chr9 122517123 122517419 -1558753 + (TGGA)n Simple_repeat Simple_repeat 1 298 0 2 1519 445 92 26 0 chr9 122518247 122518323 -1557849 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1519 684 213 112 14 chr9 122518342 122518485 -1557687 - B3A SINE B2 -41 157 1 2 1519 260 291 91 23 chr9 122518485 122518569 -1557603 - B4 SINE B4 -199 93 4 3 1519 393 39 0 0 chr9 122518586 122518637 -1557535 + (TAA)n Simple_repeat Simple_repeat 2 52 0 3 1519 419 204 9 19 chr9 122519015 122519120 -1557052 - L1ME4a LINE L1 0 6124 6021 3 1519 580 275 113 57 chr9 122519807 122520054 -1556118 + B4 SINE B4 5 265 -27 3 1519 919 102 242 0 chr9 122521020 122521177 -1554995 + B2_Mm2 SINE B2 1 195 0 3 1519 450 0 0 0 chr9 122521444 122521494 -1554678 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1519 212 86 0 28 chr9 122522298 122522334 -1553838 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 1519 290 159 0 31 chr9 122522336 122522401 -1553771 + (CATA)n Simple_repeat Simple_repeat 3 65 0 3 1519 463 241 196 20 chr9 122523161 122523309 -1552863 + ID_B1 SINE B4 26 199 -25 3 1519 201 121 0 0 chr9 122523359 122523392 -1552780 + (G)n Simple_repeat Simple_repeat 1 33 0 3 1519 186 43 0 0 chr9 122523479 122523502 -1552670 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1519 1126 97 0 0 chr9 122523590 122523735 -1552437 + B1_Mus1 SINE Alu 4 148 0 4 1519 274 216 106 18 chr9 122523736 122523849 -1552323 + L1M5 LINE L1 4980 5102 -1044 4 1519 21 0 0 0 chr9 122525115 122525136 -1551036 + AT_rich Low_complexity Low_complexity 1 21 0 4 1519 225 0 0 0 chr9 122525844 122525869 -1550303 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1519 1048 285 28 25 chr9 122526388 122526672 -1549500 - B4A SINE B4 -4 288 4 4 1519 1370 196 172 6 chr9 122527674 122528028 -1548144 - MTD LTR MaLR 0 419 7 4 1519 1122 238 162 27 chr9 122529851 122530179 -1545993 - MTEb LTR MaLR -7 372 1 4 1519 220 194 0 0 chr9 122530243 122530279 -1545893 + (CACG)n Simple_repeat Simple_repeat 4 39 0 4 1519 396 0 0 0 chr9 122531373 122531417 -1544755 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1519 340 247 268 21 chr9 122532450 122532640 -1543532 - MTEa LTR MaLR -24 355 119 5 1519 726 211 11 62 chr9 122532715 122532736 -1543436 - B2_Mm1a SINE B2 -23 170 152 5 1519 198 0 0 0 chr9 122532736 122532758 -1543414 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5 1519 923 128 18 2 chr9 122532758 122532913 -1543259 - B2_Mm2 SINE B2 -61 155 3 5 1519 267 212 75 86 chr9 122533148 122533241 -1542931 + PB1D10 SINE Alu 26 117 0 5 1519 350 325 79 0 chr9 122534040 122534154 -1542018 + MER117 DNA MER1_type 74 196 -1 5 1519 501 252 147 0 chr9 122534298 122534441 -1541731 + B3A SINE B2 1 164 -34 5 1519 684 56 0 0 chr9 122534454 122534543 -1541629 + (CA)n Simple_repeat Simple_repeat 1 89 0 5 1519 350 300 121 15 chr9 122534853 122534867 -1541305 + B1_Mus1 SINE Alu 1 142 -2 5 1519 457 263 105 0 chr9 122534867 122534981 -1541191 + ID_B1 SINE B4 93 218 -6 5 1519 282 280 62 45 chr9 122535250 122535362 -1540810 + PB1D10 SINE Alu 1 114 -3 5 1519 434 75 0 15 chr9 122535545 122535613 -1540559 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1519 297 276 93 31 chr9 122535826 122535923 -1540249 - PB1D7 SINE Alu -1 119 17 6 1519 288 0 0 0 chr9 122536568 122536600 -1539572 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1519 1258 259 73 25 chr9 122537054 122537411 -1538761 - MTEb LTR MaLR 0 379 6 6 1519 324 70 0 0 chr9 122537563 122537606 -1538566 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6 1519 888 123 50 7 chr9 122537738 122537877 -1538295 - B1_Mus2 SINE Alu -2 145 1 6 1519 328 246 55 141 chr9 122539292 122539491 -1536681 - L1MEe LINE L1 -4036 818 637 6 1519 628 304 132 25 chr9 122539521 122539922 -1536250 - Lx8 LINE L1 -3 7470 7027 6 1519 618 237 140 6 chr9 122539923 122540101 -1536071 - ID_B1 SINE B4 -21 203 2 6 1519 493 278 0 25 chr9 122540203 122540321 -1535851 - PB1D10 SINE Alu -2 115 1 6 1519 489 326 0 22 chr9 122541259 122541397 -1534775 - B4A SINE B4 -157 135 1 7 1519 672 279 30 24 chr9 122542409 122542578 -1533594 + B3 SINE B2 1 170 -46 7 1519 462 36 0 0 chr9 122542581 122542637 -1533535 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1519 192 125 0 0 chr9 122543105 122543137 -1533035 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1519 569 280 43 8 chr9 122543253 122543407 -1532765 + ID_B1 SINE B4 82 248 -44 7 1519 243 0 0 0 chr9 122543802 122543829 -1532343 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1519 189 0 0 0 chr9 122545058 122545079 -1531093 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1519 367 323 92 23 chr9 122545219 122545349 -1530823 + ID_B1 SINE B4 86 224 0 7 1519 943 245 100 70 chr9 122545371 122545630 -1530542 + B4 SINE B4 24 290 -2 7 1519 567 0 0 0 chr9 122545632 122545695 -1530477 + (TC)n Simple_repeat Simple_repeat 1 63 0 7 1519 411 21 0 0 chr9 122545695 122545742 -1530430 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1519 252 259 34 34 chr9 122547255 122547343 -1528829 - MLT1H LTR MaLR -382 167 80 8 1519 799 314 58 46 chr9 122548216 122548563 -1527609 + ORR1E LTR MaLR 5 355 -4 8 1519 253 226 22 67 chr9 122550881 122550971 -1525201 - LTR33 LTR ERVL -396 119 34 8 1519 616 256 281 0 chr9 122551372 122551532 -1524640 + ID_B1 SINE B4 1 205 -19 8 1519 426 85 0 0 chr9 122551558 122551617 -1524555 + (A)n Simple_repeat Simple_repeat 1 59 0 8 1520 414 256 1 38 chr9 122552870 122552977 -1523195 - PB1D7 SINE Alu 0 120 20 8 1520 340 272 63 59 chr9 122554334 122554527 -1521645 - MIRm SINE MIR -70 192 1 8 1520 458 236 95 65 chr9 122556366 122556534 -1519638 + B4A SINE B4 7 179 -113 8 1520 335 156 0 38 chr9 122556536 122556616 -1519556 + G-rich Low_complexity Low_complexity 5 81 0 8 1520 427 245 43 0 chr9 122557166 122557260 -1518912 + PB1 SINE Alu 1 98 -29 9 1520 928 222 46 60 chr9 122557252 122557468 -1518704 + ID_B1 SINE B4 10 222 -2 9 1520 192 77 0 0 chr9 122557469 122557495 -1518677 + (GAAA)n Simple_repeat Simple_repeat 1 26 0 9 1520 1236 82 0 0 chr9 122557495 122557665 -1518507 + (GAGAA)n Simple_repeat Simple_repeat 4 173 0 9 1520 784 227 44 25 chr9 122558217 122558375 -1517797 + B3A SINE B2 2 162 -36 9 1520 2197 113 61 19 chr9 122558372 122558734 -1517438 + RMER4B LTR ERVK 8 384 -201 9 1520 647 311 91 49 chr9 122559131 122559439 -1516733 - RLTR26 LTR ERVK -225 417 97 9 1520 1442 142 5 0 chr9 122559506 122559724 -1516448 + RMER4B LTR ERVK 367 585 0 9 1520 498 162 26 0 chr9 122559739 122559856 -1516316 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 9 1520 1010 91 172 24 chr9 122560584 122560753 -1515419 + B2_Mm2 SINE B2 2 195 0 9 1520 338 301 94 78 chr9 122562556 122562801 -1513371 - L1MEg LINE L1 -4159 1925 1677 1 1520 718 209 3 12 chr9 122562875 122563212 -1512960 + (TG)n Simple_repeat Simple_repeat 1 333 0 1 1520 189 0 0 0 chr9 122563253 122563274 -1512898 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1520 195 279 132 55 chr9 122563494 122563585 -1512587 + L2 LINE L2 1285 1382 -2037 1 1520 869 133 244 17 chr9 122564440 122564616 -1511556 + B3 SINE B2 1 216 0 1 1520 288 184 0 0 chr9 122564896 122564994 -1511178 + (CTCGG)n Simple_repeat Simple_repeat 5 102 0 1 1520 31 0 0 0 chr9 122565056 122565087 -1511085 + AT_rich Low_complexity Low_complexity 1 31 0 1 1520 819 251 23 36 chr9 122565188 122565390 -1510782 - B3 SINE B2 0 216 13 1 1520 2470 173 99 6 chr9 122565390 122565874 -1510298 - RLTR24 LTR ERV1 0 529 1 1 1520 819 251 23 36 chr9 122565874 122565890 -1510282 - B3 SINE B2 -204 12 1 1 1520 186 258 90 15 chr9 122566131 122566198 -1509974 - MIRm SINE MIR -165 111 40 1 1520 1664 240 48 25 chr9 122567098 122567492 -1508680 + MTD LTR MaLR 16 418 -1 1 1520 1470 218 105 21 chr9 122567696 122568029 -1508143 + MTEb LTR MaLR 7 367 -12 1 1520 4535 12 0 0 chr9 122569775 122570268 -1505904 + MT2_Mm LTR ERVL 1 493 0 1 1520 48507 16 6 0 chr9 122570268 122575607 -1500565 + MERVL-int LTR ERVL 1 5371 -114 1 1520 384 111 26 53 chr9 122575607 122575683 -1500489 + ORR1A3-int LTR MaLR 567 640 -1323 1 1520 319 0 0 0 chr9 122575683 122575721 -1500451 + MERVL-int LTR ERVL 5448 5485 0 1 1520 4535 12 0 0 chr9 122575721 122576214 -1499958 + MT2_Mm LTR ERVL 1 493 0 1 1520 395 222 20 160 chr9 122577388 122577538 -1498634 + B1F1 SINE Alu 14 142 -7 1 1520 979 311 22 7 chr9 122577556 122577825 -1498347 + B4 SINE B4 1 273 -19 1 1520 815 55 9 0 chr9 122577886 122577995 -1498177 + (GAA)n Simple_repeat Simple_repeat 1 110 0 1 1520 943 95 20 0 chr9 122578147 122578295 -1497877 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 1 1520 2545 125 51 5 chr9 122578726 122579121 -1497051 - MTC LTR MaLR 0 421 9 1 1520 239 299 0 103 chr9 122580105 122580202 -1495970 - B4 SINE B4 -147 145 59 1 1520 243 0 0 0 chr9 122580767 122580794 -1495378 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1520 189 261 0 39 chr9 122581636 122581687 -1494485 - MIRc SINE MIR -107 161 109 1 1520 546 57 0 0 chr9 122581997 122582067 -1494105 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1520 823 308 28 18 chr9 122582116 122582400 -1493772 - B4A SINE B4 -4 288 2 1 1520 573 15 0 0 chr9 122583535 122583601 -1492571 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1520 411 73 0 0 chr9 122584000 122584055 -1492117 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1520 252 0 0 0 chr9 122584608 122584636 -1491536 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1520 937 245 50 28 chr9 122584767 122584985 -1491187 + ID_B1 SINE B4 1 223 -1 1 1520 313 306 0 12 chr9 122585340 122585426 -1490746 + RSINE1 SINE B4 66 150 -15 1 1520 441 0 0 0 chr9 122585441 122585490 -1490682 + (CATA)n Simple_repeat Simple_repeat 4 52 0 1 1520 268 179 23 35 chr9 122586156 122586243 -1489929 + T-rich Low_complexity Low_complexity 3 88 0 1 1520 390 127 14 40 chr9 122586243 122586317 -1489855 - PB1D10 SINE Alu 0 117 46 1 1520 648 216 195 17 chr9 122586838 122587012 -1489160 - ID_B1 SINE B4 -15 209 5 1 1520 799 220 140 0 chr9 122587916 122588102 -1488070 + B3 SINE B2 1 212 -4 1 1520 293 330 17 43 chr9 122588418 122588535 -1487637 - LTR16E2 LTR ERVL -192 376 263 1 1520 674 273 30 20 chr9 122588937 122589139 -1487033 - B4A SINE B4 -21 271 68 1 1520 697 262 70 12 chr9 122589184 122589411 -1486761 + B4 SINE B4 2 271 -21 1 1520 450 0 0 0 chr9 122589411 122589461 -1486711 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1520 697 259 85 15 chr9 122589461 122589474 -1486698 + B4 SINE B4 272 286 -6 1 1520 198 0 0 0 chr9 122591020 122591042 -1485130 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1520 664 246 138 0 chr9 122591055 122591222 -1484950 - B4A SINE B4 -52 240 51 1 1520 233 164 200 0 chr9 122591339 122591394 -1484778 + B4 SINE B4 226 291 -1 1 1520 348 232 0 0 chr9 122591395 122591520 -1484652 + (CA)n Simple_repeat Simple_repeat 1 125 0 1 1520 474 220 0 0 chr9 122591544 122591685 -1484487 + (CA)n Simple_repeat Simple_repeat 2 142 0 1 1520 240 59 0 0 chr9 122591688 122591722 -1484450 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1520 344 134 59 15 chr9 122591730 122591798 -1484374 + HAL1-3A_ME LINE L1 1976 2046 -812 1 1520 654 146 0 37 chr9 122592170 122592334 -1483838 + (CACCC)n Simple_repeat Simple_repeat 4 161 0 1 1520 233 195 0 0 chr9 122592674 122592715 -1483457 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1520 543 278 93 31 chr9 122592751 122592944 -1483228 - B3 SINE B2 -11 205 1 1 1520 557 250 139 73 chr9 122592964 122593008 -1483164 - RSINE1 SINE B4 -1 164 131 1 1520 1301 139 41 18 chr9 122593008 122593228 -1482944 + URR1B DNA MER1_type 1 225 0 1 1520 557 250 139 73 chr9 122593228 122593334 -1482838 - RSINE1 SINE B4 -35 130 4 1 1520 819 198 167 0 chr9 122593340 122593532 -1482640 - B4A SINE B4 -67 225 2 1 1520 182 255 54 18 chr9 122593964 122594020 -1482152 + L4 LINE RTE 621 678 -1351 1 1520 4088 212 78 13 chr9 122596036 122596228 -1479944 - Lx5 LINE L1 -3 7047 6807 1 1520 248 0 31 0 chr9 122596228 122596260 -1479912 + (CAGG)n Simple_repeat Simple_repeat 1 33 0 1 1520 4088 212 78 13 chr9 122596260 122596977 -1479195 - Lx5 LINE L1 -244 6806 6080 1 1520 582 178 0 0 chr9 122597117 122597246 -1478926 + (CA)n Simple_repeat Simple_repeat 1 129 0 1 1520 237 315 26 43 chr9 122597356 122597472 -1478700 + MER5A DNA MER1_type 2 115 -74 1 1520 405 0 0 0 chr9 122597536 122597581 -1478591 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1520 715 260 14 6 chr9 122598661 122598863 -1477309 + B4 SINE B4 3 208 -84 1 1520 2126 204 74 22 chr9 122600389 122600889 -1475283 + RLTR20A2 LTR ERVK 1 526 -52 1 1520 555 202 190 6 chr9 122601094 122601273 -1474899 + B3 SINE B2 4 215 -1 1 1520 1752 128 117 12 chr9 122602108 122602441 -1473731 + RLTR9A LTR ERVK 1 368 0 1 1520 242 283 185 0 chr9 122602664 122602756 -1473416 + LTR16C LTR ERVL 367 475 -14 1 1520 600 279 13 0 chr9 122602823 122602977 -1473195 - RSINE1 SINE B4 -6 159 4 1 1520 693 239 220 12 chr9 122603022 122603272 -1472900 - L1MC1 LINE L1 -13 6320 6019 1 1520 633 228 0 5 chr9 122603303 122603722 -1472450 + (CA)n Simple_repeat Simple_repeat 1 416 0 1 1520 312 269 72 27 chr9 122603747 122603858 -1472314 - L1MC1 LINE L1 -348 5985 5870 1 1520 223 324 8 0 chr9 122603858 122603926 -1472246 - B1F1 SINE Alu -75 72 1 1 1520 2117 180 18 21 chr9 122603944 122604361 -1471811 + RLTR28 LTR ERVL 1 524 0 1 1520 450 180 22 22 chr9 122605712 122605814 -1470358 + PB1D9 SINE Alu 12 113 -7 1 1520 816 88 0 0 chr9 122605814 122605928 -1470244 + (GGA)n Simple_repeat Simple_repeat 2 115 0 1 1520 597 304 49 73 chr9 122606276 122606521 -1469651 - B4 SINE B4 -49 243 5 1 1520 634 236 74 0 chr9 122607461 122607609 -1468563 + RSINE1 SINE B4 3 161 -4 1 1520 1059 131 0 0 chr9 122607629 122607774 -1468398 - B1_Mus1 SINE Alu -2 146 2 1 1520 380 250 0 103 chr9 122607831 122607846 -1468326 + MT2B LTR ERVL 153 155 -446 1 1520 561 224 0 9 chr9 122607846 122607954 -1468218 + B1_Mur2 SINE Alu 3 109 -40 1 1520 2267 169 74 3 chr9 122607960 122608351 -1467821 - MTC LTR MaLR 0 421 3 1 1520 467 210 39 20 chr9 122608443 122608545 -1467627 - PB1D9 SINE Alu -15 105 2 1 1520 531 241 45 130 chr9 122609306 122609506 -1466666 - MTE2a LTR MaLR -190 189 7 1 1520 323 127 222 0 chr9 122609717 122609780 -1466392 + B4 SINE B4 1 77 -215 1 1520 770 162 88 0 chr9 122609841 122609977 -1466195 - B1_Mur3 SINE Alu -1 148 1 1 1520 232 331 156 42 chr9 122610306 122610473 -1465699 - LTR16E1 LTR ERVL -16 522 337 1 1520 396 0 0 0 chr9 122610811 122610855 -1465317 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1520 655 277 65 0 chr9 122610871 122611055 -1465117 + LTR16B LTR ERVL 266 461 -2 1 1520 671 204 88 0 chr9 122611740 122611877 -1464295 + B1_Mur3 SINE Alu 1 149 0 1 1520 288 0 0 0 chr9 122611885 122611917 -1464255 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1520 419 224 0 45 chr9 122611934 122612023 -1464149 - B1F2 SINE Alu -21 128 44 1 1520 378 0 0 0 chr9 122612031 122612073 -1464099 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1520 458 262 47 118 chr9 122612109 122612321 -1463851 + L1MA5 LINE L1 5812 6008 -292 1 1520 4430 8 4 12 chr9 122612550 122613047 -1463125 + MT2_Mm LTR ERVL 1 493 0 1 1520 48569 14 6 0 chr9 122613047 122618373 -1457799 + MERVL-int LTR ERVL 1 5360 -125 1 1520 362 167 46 35 chr9 122618373 122618460 -1457712 + ORR1A3-int LTR MaLR 553 640 -1323 1 1520 321 0 0 0 chr9 122618460 122618498 -1457674 + MERVL-int LTR ERVL 5448 5485 0 1 1520 4430 8 4 12 chr9 122618498 122618995 -1457177 + MT2_Mm LTR ERVL 1 493 0 1 1520 321 278 26 49 chr9 122619441 122619567 -1456605 - PB1D10 SINE Alu -18 131 15 1 1520 503 302 75 13 chr9 122619891 122620119 -1456053 + MER46C DNA MER2_type 96 337 -1 1 1520 187 250 92 0 chr9 122620138 122620214 -1455958 - MIRb SINE MIR -102 166 84 1 1520 652 256 59 32 chr9 122620349 122620535 -1455637 - B4 SINE B4 -100 192 2 1 1520 195 129 0 0 chr9 122620716 122620747 -1455425 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1520 443 231 43 98 chr9 122621340 122621503 -1454669 + B4A SINE B4 67 220 -72 1 1520 907 127 7 0 chr9 122621368 122621510 -1454662 + B1_Mus1 SINE Alu 6 148 0 1 1520 325 265 0 38 chr9 122621540 122621646 -1454526 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 1520 730 258 25 19 chr9 122621648 122621810 -1454362 - RSINE1 SINE B4 0 165 3 1 1520 225 0 0 0 chr9 122622647 122622672 -1453500 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1520 386 257 103 14 chr9 122622988 122623134 -1453038 + MTEb LTR MaLR 221 379 0 1 1520 298 288 81 66 chr9 122624624 122624860 -1451312 - L1MC LINE L1 -1657 4489 4246 1 1520 297 54 54 0 chr9 122624869 122624925 -1451247 + (TTG)n Simple_repeat Simple_repeat 2 60 0 2 1520 1197 55 0 7 chr9 122624925 122625062 -1451110 - B1_Mus2 SINE Alu -10 137 1 2 1520 298 288 81 66 chr9 122625062 122625145 -1451027 - L1MC LINE L1 -1901 4245 4165 1 1520 52 17 0 0 chr9 122625146 122625205 -1450967 + AT_rich Low_complexity Low_complexity 1 59 0 2 1520 255 320 48 0 chr9 122625688 122625791 -1450381 + MIRc SINE MIR 47 154 -114 2 1520 355 264 29 104 chr9 122626973 122627146 -1449026 - RSINE1 SINE B4 -4 161 2 2 1520 365 307 0 34 chr9 122627667 122627785 -1448387 - Charlie21a DNA MER1_type -515 698 585 2 1520 249 33 0 0 chr9 122627995 122628025 -1448147 + (CTTA)n Simple_repeat Simple_repeat 1 30 0 2 1520 522 180 49 90 chr9 122628025 122628147 -1448025 - B1_Mus1 SINE Alu -31 117 1 2 1520 473 214 47 79 chr9 122628175 122628302 -1447870 + RSINE1 SINE B4 2 124 -41 2 1520 262 167 0 0 chr9 122628441 122628489 -1447683 - LTR40b LTR ERVL -25 437 390 2 1520 639 237 14 0 chr9 122629165 122629304 -1446868 - ID_B1 SINE B4 0 224 84 2 1520 2350 101 145 11 chr9 122629304 122629663 -1446509 + MTB_Mm LTR MaLR 1 407 0 2 1520 677 250 38 13 chr9 122629955 122630113 -1446059 + RSINE1 SINE B4 4 165 0 2 1520 872 259 19 0 chr9 122630161 122630373 -1445799 + B3 SINE B2 1 216 0 2 1520 573 285 119 5 chr9 122631958 122632159 -1444013 + B4A SINE B4 1 224 -68 2 1520 21 0 0 0 chr9 122632159 122632180 -1443992 + AT_rich Low_complexity Low_complexity 1 21 0 2 1520 321 204 84 92 chr9 122632185 122632304 -1443868 + PB1D9 SINE Alu 1 118 -2 2 1520 1052 190 19 10 chr9 122632307 122632514 -1443658 + B3 SINE B2 3 211 -5 2 1520 259 281 16 0 chr9 122632534 122632598 -1443574 + B4A SINE B4 220 284 -8 2 1520 454 186 14 0 chr9 122632865 122633005 -1443167 + (CA)n Simple_repeat Simple_repeat 1 142 0 2 1520 624 182 17 0 chr9 122633017 122633193 -1442979 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1520 1286 194 96 77 chr9 122633335 122633698 -1442474 + ORR1D2 LTR MaLR 1 370 0 2 1520 652 288 70 33 chr9 122633801 122634042 -1442130 + ORR1E LTR MaLR 76 325 -34 2 1520 22 0 0 0 chr9 122634534 122634556 -1441616 + AT_rich Low_complexity Low_complexity 1 22 0 2 1520 447 244 31 56 chr9 122635269 122635432 -1440740 - B3A SINE B2 -2 214 56 2 1520 1046 198 18 32 chr9 122635703 122635922 -1440250 + B3 SINE B2 1 216 0 2 1520 21 0 0 0 chr9 122636010 122636031 -1440141 + AT_rich Low_complexity Low_complexity 1 21 0 2 1520 369 310 24 71 chr9 122636221 122636391 -1439781 + L1M5 LINE L1 3502 3663 -2483 2 1520 959 179 67 14 chr9 122636832 122637042 -1439130 + ID_B1 SINE B4 4 224 0 2 1520 758 144 62 35 chr9 122637047 122637191 -1438981 + B1_Mus1 SINE Alu 1 148 0 2 1520 24 32 0 0 chr9 122637195 122637226 -1438946 + AT_rich Low_complexity Low_complexity 1 31 0 2 1520 584 306 20 0 chr9 122637994 122638190 -1437982 - Tigger7 DNA MER2_type -21 2470 2271 2 1520 356 61 0 0 chr9 122639569 122639618 -1436554 + ORR1D1 LTR MaLR 21 69 -305 2 1520 212 306 0 0 chr9 122640234 122640283 -1435889 + B1F SINE Alu 1 49 -100 2 1520 226 167 0 0 chr9 122640310 122640346 -1435826 + PB1D7 SINE Alu 16 51 -69 2 1520 486 277 153 39 chr9 122640549 122640778 -1435394 + B4 SINE B4 9 263 -29 2 1520 252 0 0 0 chr9 122640832 122640860 -1435312 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1520 710 211 224 52 chr9 122641533 122641852 -1434320 + MTC LTR MaLR 13 421 0 2 1520 472 196 35 57 chr9 122642571 122642712 -1433460 - RLTR31A_Mm LTR ERVK -446 138 1 2 1520 264 336 43 14 chr9 122642719 122642858 -1433314 - Lx8 LINE L1 -1120 6353 6211 2 1520 2462 103 50 3 chr9 122642933 122643314 -1432858 - MTB_Mm LTR MaLR -8 399 1 2 1520 1331 220 37 0 chr9 122643316 122643611 -1432561 - RMER15-int LTR ERVL -2631 2368 2063 2 1520 1533 221 86 13 chr9 122643625 122644011 -1432161 - RMER15-int LTR ERVL -3021 1978 1565 2 1520 240 271 84 0 chr9 122644033 122644140 -1432032 - RMER20B LTR ERVK -37 479 364 2 1520 370 236 20 56 chr9 122644317 122644423 -1431749 - RMER20B LTR ERVK -383 133 34 2 1520 2803 236 91 18 chr9 122644465 122645139 -1431033 - RMER15-int LTR ERVL -3430 1569 847 2 1520 234 339 48 16 chr9 122645412 122645538 -1430634 + RMER10B LTR ERVL 269 398 0 2 1520 366 191 0 35 chr9 122646599 122646686 -1429486 + RLTR19-int LTR ERVK 2113 2196 -3941 2 1520 1818 199 57 72 chr9 122646709 122647239 -1428933 + RLTR11A LTR ERVK 7 528 0 2 1520 1393 206 41 129 chr9 122647409 122647873 -1428299 - RLTR23 LTR ERV1 0 430 8 2 1520 389 210 50 210 chr9 122647972 122648153 -1428019 + RLTR42-int LTR ERVK 1690 1841 -3681 2 1520 1749 206 62 75 chr9 122648153 122648715 -1427457 + RMER17B LTR ERVK 43 582 -376 2 1520 680 157 52 0 chr9 122648743 122648858 -1427314 + ETnERV2-int LTR ERVK 7070 7190 -216 2 1520 1154 202 120 15 chr9 122649250 122649591 -1426581 + RMER17B LTR ERVK 582 958 0 2 1520 25 0 0 0 chr9 122649665 122649690 -1426482 + AT_rich Low_complexity Low_complexity 1 25 0 2 1520 646 242 65 15 chr9 122649820 122650021 -1426151 + RLTR42-int LTR ERVK 1917 2127 -3395 2 1520 477 233 15 0 chr9 122650007 122650144 -1426028 + RLTR42-int LTR ERVK 2330 2448 -3689 2 1520 402 275 47 42 chr9 122650173 122650363 -1425809 - BGLII_B LTR ERVK -27 414 224 2 1520 4719 65 3 7 chr9 122650880 122651469 -1424703 - LTRIS_Mus LTR ERV1 0 587 1 2 1520 1226 191 43 0 chr9 122651832 122652089 -1424083 + RLTR11A2 LTR ERVK 258 525 -2 2 1520 1756 257 24 43 chr9 122652091 122652676 -1423496 + MYSERV6-int LTR ERVK 8119 8685 -274 2 1520 391 205 27 16 chr9 122652971 122653098 -1423074 + MYSERV6-int LTR ERVK 8698 8782 -177 2 1520 704 207 58 102 chr9 122653216 122653442 -1422730 + MYSERV6-int LTR ERVK 3507 3722 -2415 2 1520 266 235 0 0 chr9 122653442 122653493 -1422679 - LSU-rRNA_Hsa rRNA rRNA -730 4305 4255 2 1520 2133 156 0 54 chr9 122653909 122654282 -1421890 - ORR1C1 LTR MaLR -24 354 2 2 1520 389 20 0 20 chr9 122654327 122654378 -1421794 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 1520 487 185 97 53 chr9 122654828 122654942 -1421230 + B1F SINE Alu 9 127 0 2 1520 407 229 65 19 chr9 122657100 122657207 -1418965 + PB1D7 SINE Alu 1 112 -8 2 1520 239 287 103 17 chr9 122660633 122660750 -1415422 - MIRc SINE MIR -116 152 26 2 1520 228 311 7 120 chr9 122661067 122661114 -1415058 - ORR1E LTR MaLR -164 195 161 2 1520 970 266 3 85 chr9 122661114 122661430 -1414742 + B4A SINE B4 1 290 -2 2 1520 228 311 7 120 chr9 122661430 122661532 -1414640 - ORR1E LTR MaLR -199 160 63 2 1520 1054 220 40 0 chr9 122661771 122661971 -1414201 + B3 SINE B2 1 208 -8 2 1520 230 262 31 62 chr9 122663243 122663308 -1412864 + L2c LINE L2 3290 3352 -35 2 1520 582 260 113 22 chr9 122663370 122663555 -1412617 + B4A SINE B4 1 202 -90 2 1520 438 20 0 0 chr9 122663668 122663719 -1412453 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1520 519 251 23 128 chr9 122664004 122664223 -1411949 + B3A SINE B2 2 197 -1 2 1520 897 142 0 6 chr9 122664248 122664404 -1411768 - RMER4B LTR ERVK -430 155 1 2 1520 3758 110 16 25 chr9 122664428 122664997 -1411175 - LTRIS2 LTR ERV1 0 564 1 2 1520 853 135 0 0 chr9 122665664 122665790 -1410382 - B1_Mur4 SINE Alu 0 150 25 2 1520 5065 115 55 23 chr9 122665885 122666763 -1409409 + RMER17A2 LTR ERVK 1 906 0 2 1520 210 281 35 0 chr9 122667564 122667621 -1408551 + RSINE1 SINE B4 97 155 -10 2 1520 955 137 7 52 chr9 122667640 122667794 -1408378 + B1_Mur1 SINE Alu 2 148 -1 2 1520 324 0 0 0 chr9 122667797 122667833 -1408339 + (TATG)n Simple_repeat Simple_repeat 4 39 0 2 1520 490 187 110 0 chr9 122667864 122667955 -1408217 - PB1D9 SINE Alu -10 110 10 2 1520 413 218 13 0 chr9 122668734 122668812 -1407360 + ID4_ SINE ID 2 80 -3 2 1520 387 311 129 6 chr9 122668880 122669058 -1407114 + L2 LINE L2 1409 1608 -1811 2 1520 186 133 0 0 chr9 122669108 122669138 -1407034 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1520 760 93 9 0 chr9 122669138 122669245 -1406927 - B2_Mm1t SINE B2 -85 108 1 2 1520 461 339 111 83 chr9 122669246 122669858 -1406314 + L2 LINE L2 2142 2770 -649 2 1520 265 288 0 0 chr9 122670109 122670182 -1405990 - L1MD1 LINE L1 -152 6090 6018 2 1520 832 297 125 25 chr9 122672418 122672819 -1403353 - L1MD1 LINE L1 -195 6047 5607 2 1520 1502 81 5 0 chr9 122672866 122673052 -1403120 - B2_Mm1t SINE B2 -6 187 1 2 1520 1505 176 52 193 chr9 122673109 122673554 -1402618 + ORR1C2 LTR MaLR 1 382 -2 2 1520 2042 249 77 16 chr9 122673554 122674129 -1402043 + ORR1C2-int LTR MaLR 4 613 -757 2 1520 337 297 88 25 chr9 122674173 122674332 -1401840 - L1MEb LINE L1 -5633 437 269 2 1520 942 124 80 0 chr9 122675083 122675220 -1400952 + B1_Mur4 SINE Alu 1 148 -2 2 1520 829 264 44 1 chr9 122675244 122675446 -1400726 - B3 SINE B2 -3 213 4 2 1520 461 300 62 64 chr9 122675802 122675982 -1400190 - ID_B1 SINE B4 0 224 58 2 1520 262 329 175 24 chr9 122676338 122676590 -1399582 - B4A SINE B4 -2 290 1 2 1520 498 286 38 0 chr9 122676635 122676740 -1399432 + B3A SINE B2 59 167 -31 2 1520 407 293 108 18 chr9 122676973 122677140 -1399032 + MER5A DNA MER1_type 5 186 -3 2 1520 2249 132 46 59 chr9 122677196 122677568 -1398604 - ORR1B2 LTR MaLR 0 367 1 2 1520 1481 60 53 16 chr9 122677605 122677793 -1398379 + B2_Mm2 SINE B2 1 195 0 2 1520 527 322 79 135 chr9 122678420 122678954 -1397218 - MER44B DNA MER2_type -1 549 46 2 1520 356 292 32 89 chr9 122679101 122679225 -1396947 + PB1 SINE Alu 4 120 -7 2 1520 435 19 0 0 chr9 122679282 122679334 -1396838 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1520 378 0 0 0 chr9 122679334 122679376 -1396796 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1520 286 206 52 52 chr9 122679392 122679469 -1396703 - PB1D10 SINE Alu -1 116 40 2 1520 647 288 185 46 chr9 122679522 122679824 -1396348 - ORR1E LTR MaLR -13 346 3 2 1520 566 288 13 33 chr9 122679892 122680043 -1396129 + RSINE1 SINE B4 3 150 -15 2 1520 441 211 172 101 chr9 122680825 122680888 -1395284 + B4 SINE B4 4 175 -117 2 1520 574 188 43 86 chr9 122680888 122681028 -1395144 + B1_Mur3 SINE Alu 10 143 -6 2 1520 441 211 172 101 chr9 122681028 122681052 -1395120 + B4 SINE B4 176 246 -46 2 1520 423 137 0 0 chr9 122681052 122681125 -1395047 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 2 1520 577 362 6 0 chr9 122681129 122681303 -1394869 + B4A SINE B4 43 217 -75 3 1520 789 256 85 5 chr9 122681316 122681516 -1394656 + B3 SINE B2 1 216 0 3 1520 264 330 9 74 chr9 122681525 122681633 -1394539 + B1_Mus1 SINE Alu 40 140 -8 3 1520 1548 63 21 0 chr9 122681789 122681978 -1394194 - B2_Mm2 SINE B2 -2 193 1 3 1520 621 257 35 80 chr9 122682006 122682205 -1393967 + B3A SINE B2 2 191 -7 3 1520 325 316 127 13 chr9 122682266 122682423 -1393749 - MLT1B LTR MaLR 0 390 216 3 1520 2065 141 75 28 chr9 122682590 122682948 -1393224 - ORR1C1 LTR MaLR -3 375 1 3 1520 258 266 62 12 chr9 122682949 122683029 -1393143 + B3 SINE B2 123 206 -10 3 1521 632 149 51 34 chr9 122683585 122683703 -1392469 + PB1D9 SINE Alu 1 120 0 3 1521 330 277 181 0 chr9 122684130 122684224 -1391948 - PB1 SINE Alu -16 111 1 3 1521 233 281 0 0 chr9 122684428 122684485 -1391687 - L1M5 LINE L1 -639 5540 5484 3 1521 281 254 0 0 chr9 122684503 122684566 -1391606 + ID_B1 SINE B4 82 144 -80 3 1521 319 344 0 47 chr9 122684865 122684993 -1391179 + RSINE1 SINE B4 44 165 0 3 1521 871 150 29 0 chr9 122685017 122685157 -1391015 + B1_Mur4 SINE Alu 1 144 -6 3 1521 332 94 0 19 chr9 122686195 122686249 -1389923 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1521 383 288 52 35 chr9 122686280 122686453 -1389719 + B2_Mm2 SINE B2 1 176 -19 3 1521 846 169 31 0 chr9 122686459 122686589 -1389583 + B1_Mur4 SINE Alu 4 137 -13 3 1521 402 21 0 0 chr9 122686593 122686640 -1389532 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1521 1128 197 9 14 chr9 122686652 122686863 -1389309 + B3 SINE B2 7 216 0 3 1521 23 0 0 0 chr9 122686870 122686893 -1389279 + AT_rich Low_complexity Low_complexity 1 23 0 3 1521 333 0 0 0 chr9 122687448 122687485 -1388687 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1521 655 276 38 50 chr9 122687516 122687676 -1388496 - RSINE1 SINE B4 -5 160 3 3 1521 26 0 0 0 chr9 122687691 122687717 -1388455 + AT_rich Low_complexity Low_complexity 1 26 0 3 1521 386 269 11 0 chr9 122687912 122688005 -1388167 + PB1D7 SINE Alu 2 95 -25 3 1521 505 282 40 13 chr9 122688022 122688173 -1387999 + RSINE1 SINE B4 2 156 -9 3 1521 27 49 0 0 chr9 122688328 122688369 -1387803 + AT_rich Low_complexity Low_complexity 1 41 0 3 1521 952 151 14 7 chr9 122688385 122688532 -1387640 - B1_Mus1 SINE Alu 0 148 1 3 1521 414 0 0 0 chr9 122688570 122688616 -1387556 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 3 1521 1287 44 0 0 chr9 122688616 122688775 -1387397 - B2_Mm1t SINE B2 -33 160 2 3 1521 2182 80 0 7 chr9 122689996 122690286 -1385886 + L1_Mus1 LINE L1 6177 6464 -103 3 1521 644 255 57 25 chr9 122690997 122691154 -1385018 - B4A SINE B4 -122 170 9 3 1521 501 252 183 0 chr9 122691209 122691340 -1384832 + ID_B1 SINE B4 70 224 0 3 1521 666 221 73 0 chr9 122691751 122691887 -1384285 - B1_Mur2 SINE Alu -2 147 2 3 1521 216 130 0 0 chr9 122692409 122692455 -1383717 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1521 1238 285 96 10 chr9 122692494 122692880 -1383292 - MTD LTR MaLR 0 419 1 3 1521 520 273 94 71 chr9 122692969 122693275 -1382897 + B4 SINE B4 1 278 -14 3 1521 215 250 0 0 chr9 122693275 122693327 -1382845 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1521 191 232 153 42 chr9 122693644 122693716 -1382456 - L2 LINE L2 -2663 756 677 3 1521 200 170 0 41 chr9 122694139 122694188 -1381984 + CT-rich Low_complexity Low_complexity 6 52 0 3 1521 300 271 0 0 chr9 122694703 122694762 -1381410 + ID4 SINE ID 23 81 -2 3 1521 291 316 13 26 chr9 122694762 122694781 -1381391 + ID_B1 SINE B4 24 100 -124 3 1521 221 245 82 0 chr9 122694819 122694868 -1381304 + B4A SINE B4 2 54 -238 3 1521 543 276 31 8 chr9 122694881 122695009 -1381163 + B4 SINE B4 104 234 -58 3 1521 244 306 58 7 chr9 122695523 122695661 -1380511 + L1MD LINE L1 3468 3612 -2534 3 1521 231 308 107 45 chr9 122695703 122695815 -1380357 - PB1D9 SINE Alu -1 119 1 3 1521 791 157 0 108 chr9 122695871 122696028 -1380144 + B1_Mur4 SINE Alu 11 150 0 3 1521 434 222 184 9 chr9 122696064 122696173 -1379999 + ID_B1 SINE B4 84 211 -13 3 1521 820 199 61 61 chr9 122696177 122696375 -1379797 + B3 SINE B2 4 201 -15 3 1521 232 293 0 0 chr9 122696392 122696450 -1379722 + L1M4 LINE L1 3690 3747 -2399 3 1521 397 285 147 75 chr9 122696430 122696482 -1379690 + L1M4 LINE L1 3950 4001 -2145 3 1521 4125 103 2 9 chr9 122696482 122697039 -1379133 + Lx3A LINE L1 6427 6979 -2 3 1521 397 285 147 75 chr9 122697039 122697361 -1378811 + L1M4 LINE L1 4002 4350 -1796 3 1521 387 182 296 0 chr9 122697399 122697531 -1378641 + L1MD LINE L1 4425 4595 -1551 3 1521 250 296 0 0 chr9 122697574 122697628 -1378544 + B1F1 SINE Alu 8 61 -88 3 1521 509 210 187 7 chr9 122697635 122697774 -1378398 + RSINE1 SINE B4 2 165 0 3 1521 711 288 6 0 chr9 122698463 122698640 -1377532 + B3A SINE B2 3 180 -18 3 1521 1219 69 0 0 chr9 122699550 122699694 -1376478 - B1_Mus2 SINE Alu -2 145 2 3 1521 254 265 19 93 chr9 122699831 122699939 -1376233 - B1F SINE Alu -27 121 21 3 1521 1346 27 0 0 chr9 122700066 122700213 -1375959 - B1_Mus2 SINE Alu 0 147 1 3 1521 910 197 7 0 chr9 122700259 122700406 -1375766 + B1_Mur3 SINE Alu 2 149 0 3 1521 210 191 0 0 chr9 122701013 122701055 -1375117 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 3 1521 810 189 14 14 chr9 122701055 122701200 -1374972 - B1_Mm SINE Alu -1 146 2 3 1521 474 344 26 7 chr9 122701383 122701538 -1374634 - RSINE1 SINE B4 -4 161 4 3 1521 440 273 44 29 chr9 122702171 122702307 -1373865 - B1_Mur2 SINE Alu 0 149 12 3 1521 378 296 0 0 chr9 122702456 122702544 -1373628 + MER58C DNA MER1_type 2 89 -126 3 1521 1171 274 17 17 chr9 122702592 122702882 -1373290 - B4A SINE B4 0 292 3 3 1521 362 238 23 70 chr9 122702882 122702962 -1373210 - ID SINE ID -137 87 12 3 1521 995 221 47 0 chr9 122702987 122703177 -1372995 - B3 SINE B2 -14 202 4 3 1521 789 288 10 16 chr9 122703278 122703472 -1372700 + B3A SINE B2 1 193 -5 3 1521 524 127 51 0 chr9 122703508 122703587 -1372585 + B1_Mus2 SINE Alu 5 87 -60 3 1521 351 321 11 10 chr9 122703948 122704062 -1372110 - B1F SINE Alu -4 116 1 3 1521 312 91 0 0 chr9 122704097 122704141 -1372031 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1521 22 0 0 0 chr9 122704315 122704337 -1371835 + AT_rich Low_complexity Low_complexity 1 22 0 3 1521 986 145 0 14 chr9 122704786 122704933 -1371239 + B1_Mus1 SINE Alu 1 145 -3 3 1521 862 257 19 28 chr9 122705357 122705569 -1370603 - B3 SINE B2 -3 213 4 3 1521 210 37 0 0 chr9 122707131 122707158 -1369014 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1521 321 296 63 27 chr9 122708134 122708245 -1367927 - PB1D10 SINE Alu 0 117 3 3 1521 29 60 0 0 chr9 122709190 122709240 -1366932 + AT_rich Low_complexity Low_complexity 1 50 0 3 1521 284 224 43 43 chr9 122709252 122709322 -1366850 - MLT1F1 LTR MaLR -344 225 156 3 1521 603 287 167 70 chr9 122709325 122709696 -1366476 - LTR40b LTR ERVL -2 460 54 3 1521 300 258 15 0 chr9 122710795 122710861 -1365311 + MER112 DNA MER1_type 195 261 0 3 1521 1043 189 66 5 chr9 122711526 122711739 -1364433 - MTC LTR MaLR 0 421 196 3 1521 1286 55 0 0 chr9 122711764 122711910 -1364262 - B1_Mm SINE Alu 0 147 2 3 1521 7894 81 17 1 chr9 122711915 122713120 -1363052 - L1_Mus4 LINE L1 -3 6633 5413 3 1521 912 177 98 5 chr9 122713120 122713313 -1362859 - MTC LTR MaLR -210 211 1 3 1521 275 349 19 80 chr9 122713404 122713566 -1362606 - RSINE1 SINE B4 -5 160 9 3 1521 679 137 195 31 chr9 122713702 122713830 -1362342 + B1_Mur4 SINE Alu 2 150 0 3 1521 553 241 0 0 chr9 122714349 122714461 -1361711 + PB1D7 SINE Alu 8 119 -1 3 1521 2626 178 45 20 chr9 122715198 122715753 -1360419 + MERVL_2A-int LTR ERVL 907 1475 -4286 3 1521 874 137 19 76 chr9 122715911 122716069 -1360103 + B1_Mur4 SINE Alu 1 149 -1 3 1521 651 203 0 17 chr9 122716193 122716302 -1359870 + PB1D9 SINE Alu 3 111 -9 3 1521 225 0 0 0 chr9 122716302 122716327 -1359845 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1521 265 247 17 4 chr9 122716568 122716644 -1359528 + B1_Mur1 SINE Alu 71 146 -1 3 1521 410 241 46 9 chr9 122717458 122717567 -1358605 - RMER5 LTR ERV1 -66 468 356 3 1521 195 42 0 0 chr9 122717623 122717647 -1358525 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1521 342 176 82 62 chr9 122717647 122717744 -1358428 + ORR1E LTR MaLR 259 357 -2 3 1521 258 260 65 37 chr9 122717750 122717858 -1358314 - L1MC LINE L1 -1689 4457 4347 3 1521 481 245 54 54 chr9 122718432 122718544 -1357628 - ID_B1 SINE B4 -11 213 102 3 1521 3104 186 82 2 chr9 122718688 122719287 -1356885 + RMER1B Other Other 409 1055 -11 3 1521 245 226 0 0 chr9 122719688 122719741 -1356431 - PB1D9 SINE Alu -1 119 67 3 1521 255 218 73 0 chr9 122719729 122719784 -1356388 - B4 SINE B4 -224 68 10 3 1521 738 205 106 69 chr9 122719924 122720113 -1356059 + B3A SINE B2 3 198 0 3 1521 281 49 0 0 chr9 122720397 122720438 -1355734 + B1_Mm SINE Alu 107 147 0 3 1521 191 211 26 0 chr9 122720505 122720543 -1355629 + L4 LINE RTE 646 684 -1345 3 1521 249 33 0 0 chr9 122721591 122721621 -1354551 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1521 598 236 134 80 chr9 122721682 122721921 -1354251 + 7SK RNA RNA 7 258 -73 4 1521 258 32 0 0 chr9 122722161 122722192 -1353980 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1521 240 314 90 54 chr9 122722204 122722315 -1353857 + PB1D10 SINE Alu 3 117 0 4 1521 619 278 0 124 chr9 122722318 122722503 -1353669 + RSINE1 SINE B4 4 165 0 4 1521 654 250 15 74 chr9 122723054 122723257 -1352915 - B3A SINE B2 -6 192 2 4 1521 347 261 20 6 chr9 122723341 122723436 -1352736 - B1_Mur3 SINE Alu -20 97 1 4 1521 391 239 26 35 chr9 122723912 122724025 -1352147 + B1F2 SINE Alu 1 112 -37 4 1521 265 338 29 22 chr9 122724775 122724796 -1351376 + ID SINE ID 63 84 -140 4 1521 358 276 43 8 chr9 122724796 122724913 -1351259 + B1F1 SINE Alu 3 123 -26 4 1521 867 152 13 27 chr9 122725246 122725395 -1350777 - B1_Mus2 SINE Alu 0 147 1 4 1521 733 221 61 12 chr9 122725415 122725580 -1350592 - B3 SINE B2 -21 195 23 4 1521 216 254 67 17 chr9 122725606 122725666 -1350506 - B1_Mur2 SINE Alu -56 93 31 4 1521 248 277 52 118 chr9 122725947 122726082 -1350090 - RLTR24 LTR ERV1 -83 446 321 4 1521 276 333 36 0 chr9 122726496 122726607 -1349565 + MER3 DNA MER1_type 32 146 -63 4 1521 420 287 8 17 chr9 122726672 122726789 -1349383 - ID_B1 SINE B4 -28 196 81 4 1521 21 0 0 0 chr9 122726791 122726812 -1349360 + AT_rich Low_complexity Low_complexity 1 21 0 4 1521 431 233 6 0 chr9 122726992 122727099 -1349073 + PB1D9 SINE Alu 1 110 -10 4 1521 322 276 0 13 chr9 122727129 122727206 -1348966 - ID4 SINE ID -1 82 7 4 1521 833 196 12 6 chr9 122727250 122727414 -1348758 + B3 SINE B2 1 165 -51 4 1521 297 0 0 0 chr9 122727414 122727447 -1348725 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1521 21 0 0 0 chr9 122728283 122728304 -1347868 + AT_rich Low_complexity Low_complexity 1 21 0 4 1521 236 149 0 21 chr9 122728505 122728553 -1347619 + B1F SINE Alu 102 148 -1 4 1521 627 167 0 53 chr9 122728646 122728779 -1347393 + B1_Mur2 SINE Alu 24 149 0 4 1521 500 209 87 29 chr9 122729080 122729218 -1346954 - B1_Mur1 SINE Alu -1 148 3 4 1521 568 252 14 22 chr9 122731030 122731168 -1345004 - B1_Mur1 SINE Alu 0 149 13 4 1521 639 208 0 0 chr9 122731169 122731275 -1344897 - B1_Mur2 SINE Alu -43 106 1 4 1521 1438 55 28 0 chr9 122731610 122731791 -1344381 - B2_Mm1a SINE B2 -7 186 1 4 1521 560 53 13 0 chr9 122732229 122732305 -1343867 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 1521 859 158 13 33 chr9 122733216 122733367 -1342805 + B1_Mus1 SINE Alu 1 148 0 4 1521 1233 209 146 12 chr9 122733725 122734055 -1342117 - ORR1D1 LTR MaLR 0 374 1 4 1521 2113 127 84 8 chr9 122734228 122734585 -1341587 - ORR1C2 LTR MaLR 0 384 1 4 1521 652 234 31 31 chr9 122734634 122734793 -1341379 + RSINE1 SINE B4 2 160 -5 4 1521 496 261 91 7 chr9 122734947 122735080 -1341092 + RSINE1 SINE B4 5 149 -16 4 1521 198 0 0 0 chr9 122735080 122735102 -1341070 + (CCA)n Simple_repeat Simple_repeat 3 24 0 4 1521 234 269 24 60 chr9 122735493 122735576 -1340596 + B4A SINE B4 90 169 -123 4 1521 488 186 19 38 chr9 122735505 122735611 -1340561 + PB1D9 SINE Alu 16 119 -1 4 1521 1141 119 57 6 chr9 122735630 122735807 -1340365 - B2_Mm2 SINE B2 -8 187 2 4 1521 253 288 143 9 chr9 122736288 122736393 -1339779 - RSINE1 SINE B4 -4 161 43 4 1521 637 214 121 30 chr9 122736437 122736635 -1339537 - B3 SINE B2 0 216 1 4 1521 208 135 0 0 chr9 122736647 122736684 -1339488 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 4 1521 665 239 28 0 chr9 122736685 122736827 -1339345 - B1F SINE Alu 0 149 4 4 1521 1148 80 17 6 chr9 122736981 122737157 -1339015 - L1_Mus3 LINE L1 -7 6631 6454 4 1521 640 155 6 165 chr9 122737269 122737439 -1338733 - B1_Mur4 SINE Alu 0 150 8 4 1521 1262 103 11 21 chr9 122737479 122737667 -1338505 - B2_Mm1t SINE B2 -6 187 2 4 1521 917 190 115 0 chr9 122737713 122737887 -1338285 + B3 SINE B2 1 194 -22 4 1521 212 0 0 35 chr9 122737887 122737916 -1338256 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 4 1521 836 171 14 7 chr9 122737923 122738070 -1338102 + B1_Mur3 SINE Alu 1 148 -1 4 1521 279 221 194 52 chr9 122738088 122738222 -1337950 + L1MD LINE L1 5223 5375 -771 4 1521 4166 138 54 15 chr9 122738278 122739004 -1337168 + RMER6A LTR ERVK 1 754 -2 4 1521 288 296 130 58 chr9 122739038 122739246 -1336926 + L1MD LINE L1 5482 5704 -655 4 1521 316 183 0 32 chr9 122740222 122740284 -1335888 + B1_Mur4 SINE Alu 1 60 -90 4 1521 426 221 39 0 chr9 122740318 122740422 -1335750 + B1_Mur2 SINE Alu 42 149 0 4 1521 749 193 13 13 chr9 122740496 122740727 -1335445 + CT-rich Low_complexity Low_complexity 1 231 0 4 1521 489 280 35 82 chr9 122741072 122741243 -1334929 + B3A SINE B2 20 182 -16 4 1521 282 166 73 22 chr9 122741243 122741379 -1334793 + (TA)n Simple_repeat Simple_repeat 2 144 0 4 1521 22 115 0 0 chr9 122741390 122741503 -1334669 + AT_rich Low_complexity Low_complexity 1 113 0 4 1521 293 240 39 39 chr9 122741528 122741706 -1334466 + (TA)n Simple_repeat Simple_repeat 1 178 0 4 1521 451 237 8 66 chr9 122741732 122741854 -1334318 + PB1D10 SINE Alu 2 116 -1 4 1521 237 33 0 0 chr9 122742173 122742203 -1333969 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1521 955 116 13 45 chr9 122742213 122742367 -1333805 - B1_Mur3 SINE Alu 0 149 1 4 1521 1152 62 7 7 chr9 122742422 122742569 -1333603 + B1_Mm SINE Alu 1 147 0 4 1521 646 217 60 22 chr9 122742862 122743046 -1333126 - B3A SINE B2 -3 195 5 4 1521 845 223 66 5 chr9 122743413 122743611 -1332561 + B3 SINE B2 6 215 -1 4 1521 370 270 30 103 chr9 122745093 122745258 -1330914 + MT2B LTR ERVL 105 257 -344 4 1521 817 126 0 38 chr9 122745163 122745295 -1330877 + B1_Mur4 SINE Alu 11 137 -13 4 1521 248 56 0 0 chr9 122746288 122746324 -1329848 + B3 SINE B2 3 38 -178 4 1521 804 138 43 7 chr9 122747418 122747557 -1328615 - B1_Mus2 SINE Alu -1 146 3 4 1521 640 234 68 36 chr9 122747905 122748127 -1328045 + LTRIS4 LTR ERV1 279 507 0 4 1521 780 137 8 8 chr9 122748127 122748253 -1327919 + MTD LTR MaLR 292 417 -2 4 1521 287 309 239 5 chr9 122748261 122748466 -1327706 + MER2 DNA MER2_type 93 345 0 4 1521 349 221 143 31 chr9 122748704 122748802 -1327370 + B1F1 SINE Alu 7 115 -34 4 1521 231 211 53 12 chr9 122748865 122748950 -1327222 + MLT1D LTR MaLR 1 93 -412 4 1521 580 13 13 0 chr9 122748972 122749049 -1327123 + L1Md_F2 LINE L1 6504 6581 -1 4 1521 2127 89 22 0 chr9 122749049 122749355 -1326817 + ORR1A2 LTR MaLR 14 326 -1 4 1521 10122 112 146 24 chr9 122749355 122751104 -1325068 + ORR1A2-int LTR MaLR 1 1963 0 4 1521 2413 99 12 3 chr9 122751104 122751428 -1324744 + ORR1A2 LTR MaLR 1 327 0 4 1521 318 291 52 45 chr9 122751765 122751920 -1324252 + RLTR14 LTR ERV1 225 380 -2 4 1521 1680 16 0 20 chr9 122752504 122752699 -1323473 + B2_Mm1a SINE B2 1 191 -2 4 1521 258 209 104 0 chr9 122752706 122752773 -1323399 + ID_B1 SINE B4 80 153 -71 4 1521 632 127 7 93 chr9 122753587 122753726 -1322446 - RMER10A LTR ERVL 0 442 316 4 1521 1970 176 160 93 chr9 122753804 122754306 -1321866 - RLTR40 LTR ERVK -4 813 224 4 1521 4531 66 14 15 chr9 122754306 122754894 -1321278 - LTRIS_Mus LTR ERV1 0 587 1 4 1521 1970 176 160 93 chr9 122754894 122755141 -1321031 - RLTR40 LTR ERVK -594 223 14 4 1521 400 316 55 49 chr9 122755922 122756085 -1320087 - B3A SINE B2 -7 191 28 4 1521 359 41 0 0 chr9 122756119 122756168 -1320004 - L1_Mm LINE L1 -4157 1726 1678 4 1521 641 85 0 117 chr9 122756168 122756288 -1319884 + L1_Mus1 LINE L1 6456 6561 -6 4 1521 231 291 23 11 chr9 122756312 122756399 -1319773 + L1M5 LINE L1 5437 5524 -920 4 1521 1500 128 169 34 chr9 122757055 122757484 -1318688 + RLTR6_Mm LTR ERV1 37 584 -70 4 1521 466 188 21 10 chr9 122757865 122757962 -1318210 + PB1D7 SINE Alu 2 99 -21 4 1521 205 260 97 29 chr9 122758320 122758423 -1317749 - MIR SINE MIR -30 232 123 4 1521 562 265 73 0 chr9 122759473 122759609 -1316563 - B3 SINE B2 -17 199 54 4 1521 269 157 6 71 chr9 122760130 122760207 -1315965 - B1_Mur4 SINE Alu 0 150 48 4 1521 258 228 0 0 chr9 122761733 122761790 -1314382 - MMSAT4 Satellite Satellite -84 84 28 4 1521 345 216 108 36 chr9 122761990 122762129 -1314043 - MMSAT4 Satellite Satellite -5 163 15 4 1521 293 169 17 0 chr9 122762472 122762531 -1313641 - MMSAT4 Satellite Satellite -78 90 31 4 1521 700 111 15 73 chr9 122764088 122764224 -1311948 - URR1B DNA MER1_type 0 225 98 4 1521 1447 131 172 34 chr9 122764337 122764765 -1311407 + RLTR6_Mm LTR ERV1 37 584 -70 4 1521 1077 195 20 5 chr9 122764902 122765103 -1311069 + B3 SINE B2 5 208 -8 4 1521 466 310 51 13 chr9 122765366 122765523 -1310649 + RSINE1 SINE B4 3 165 0 4 1521 1444 63 10 10 chr9 122765577 122765770 -1310402 + B2_Mm2 SINE B2 3 195 0 4 1521 305 341 0 0 chr9 122765811 122765949 -1310223 - MurSatRep1 Unknown Unknown -1393 744 607 4 1521 251 300 80 0 chr9 122767206 122767306 -1308866 + MamRep605 Unknown Unknown 306 413 -463 4 1521 25 0 0 0 chr9 122767658 122767683 -1308489 + AT_rich Low_complexity Low_complexity 1 25 0 4 1521 253 255 0 0 chr9 122767726 122767777 -1308395 + B1_Mus2 SINE Alu 2 52 -95 4 1521 1109 261 45 71 chr9 122767860 122768292 -1307880 + RLTR1B LTR ERV1 90 512 0 4 1521 243 0 0 0 chr9 122768518 122768545 -1307627 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1521 958 209 41 37 chr9 122768560 122768769 -1307403 + ORR1C2 LTR MaLR 55 264 -120 5 1521 1498 77 5 0 chr9 122768769 122768976 -1307196 + ORR1A2 LTR MaLR 1 208 -119 5 1521 584 151 16 12 chr9 122768997 122769118 -1307054 + LTRIS4 LTR ERV1 24 203 -304 5 1521 1471 139 117 44 chr9 122769118 122769478 -1306694 - LTRIS4 LTR ERV1 0 507 122 5 1521 297 50 0 0 chr9 122769486 122769526 -1306646 - MuRRS4-int LTR ERV1 0 5063 5024 5 1521 1616 134 25 7 chr9 122769531 122769809 -1306363 + LTRIS4 LTR ERV1 225 507 0 5 1521 861 61 0 0 chr9 122769809 122769924 -1306248 + ORR1A1 LTR MaLR 224 338 -8 5 1521 517 161 0 132 chr9 122769928 122770057 -1306115 + ORR1C1 LTR MaLR 255 366 -12 5 1521 557 255 12 25 chr9 122770182 122770343 -1305829 + RLTR14 LTR ERV1 224 382 0 5 1521 412 270 85 119 chr9 122771574 122771773 -1304399 + L1MD LINE L1 4417 4611 -1535 5 1521 290 316 13 0 chr9 122771773 122771852 -1304320 + ID4 SINE ID 4 83 0 5 1521 412 270 85 119 chr9 122771852 122771980 -1304192 + L1MD LINE L1 4612 4733 -1413 5 1521 316 233 287 16 chr9 122771996 122772118 -1304054 - RSINE1 SINE B4 -2 163 9 5 1521 289 172 90 70 chr9 122772123 122772223 -1303949 + L1MD LINE L1 4731 4832 -1314 5 1521 388 292 77 12 chr9 122772317 122772487 -1303685 + B3A SINE B2 1 181 -17 5 1521 517 196 132 20 chr9 122772543 122772694 -1303478 + L1MC4a LINE L1 6727 6894 -988 5 1521 291 167 107 40 chr9 122772719 122772794 -1303378 + RSINE1 SINE B4 25 104 -61 5 1521 180 0 0 0 chr9 122772810 122772830 -1303342 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1521 270 106 0 0 chr9 122772858 122772905 -1303267 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1521 534 198 8 67 chr9 122772940 122773059 -1303113 + PB1D10 SINE Alu 1 112 -5 5 1521 238 209 126 95 chr9 122773123 122773218 -1302954 + MT2B LTR ERVL 167 264 -337 5 1521 429 174 27 117 chr9 122773139 122773250 -1302922 + PB1D9 SINE Alu 18 118 -2 5 1521 589 296 19 60 chr9 122773563 122773779 -1302393 + B3 SINE B2 1 207 -9 5 1521 328 346 48 73 chr9 122773871 122774036 -1302136 + RSINE1 SINE B4 5 165 0 5 1521 475 255 9 70 chr9 122774051 122774165 -1302007 + B1_Mur1 SINE Alu 2 108 -41 5 1521 180 0 0 0 chr9 122774407 122774427 -1301745 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 5 1521 25 0 0 0 chr9 122774500 122774525 -1301647 + AT_rich Low_complexity Low_complexity 1 25 0 5 1521 267 278 112 10 chr9 122774631 122774729 -1301443 - PB1D10 SINE Alu -9 108 1 5 1521 25 31 0 0 chr9 122774780 122774812 -1301360 + AT_rich Low_complexity Low_complexity 1 32 0 5 1521 691 132 289 0 chr9 122775307 122775473 -1300699 - RLTR47_MM LTR ERV1 -318 214 1 5 1521 292 268 28 0 chr9 122775593 122775664 -1300508 + RLTR28B LTR ERVL 6 78 -403 5 1521 876 133 133 0 chr9 122775668 122775856 -1300316 - RLTR47_MM LTR ERV1 0 532 320 5 1521 1752 276 16 6 chr9 122776256 122776741 -1299431 - RLTR6-int LTR ERV1 -2379 5399 4910 5 1521 1388 65 0 11 chr9 122776741 122776956 -1299216 + MTA_Mm LTR MaLR 122 346 0 5 1521 8158 74 14 6 chr9 122776958 122778048 -1298124 + MTA_Mm-int LTR MaLR 1 1098 0 5 1521 3227 56 5 2 chr9 122778048 122778443 -1297729 + MTA_Mm LTR MaLR 1 396 0 5 1521 443 349 37 8 chr9 122778819 122779062 -1297110 - RLTR6-int LTR ERV1 -3170 4436 4187 5 1521 1725 329 68 59 chr9 122779096 122780719 -1295453 - RLTR6-int LTR ERV1 -4854 2924 1287 5 1521 322 229 172 43 chr9 122781227 122781460 -1294712 - RLTR6-int LTR ERV1 -6864 692 308 5 1521 278 167 83 0 chr9 122781765 122781825 -1294347 - RLTR47_MM LTR ERV1 0 532 468 5 1521 1673 103 63 33 chr9 122781830 122782093 -1294079 - RLTR47_MM LTR ERV1 -221 311 42 5 1521 3793 39 74 0 chr9 122782093 122782552 -1293620 - MT2_Mm LTR ERVL 0 493 1 5 1521 1673 103 63 33 chr9 122782552 122782590 -1293582 - RLTR47_MM LTR ERV1 -491 41 1 5 1521 601 255 75 75 chr9 122782606 122782860 -1293312 + RLTR28B LTR ERVL 11 264 -217 5 1521 1753 119 52 23 chr9 122782903 122783213 -1292959 + ORR1A2 LTR MaLR 1 319 -8 5 1521 3558 177 29 18 chr9 122783217 122784038 -1292134 + ORR1A2-int LTR MaLR 1 830 -962 5 1521 750 210 196 0 chr9 122784875 122785104 -1291068 - RMER21B LTR ERV1 -289 553 280 5 1521 1787 179 19 92 chr9 122785105 122785245 -1290927 - ORR1B1 LTR MaLR 0 394 261 5 1521 2224 182 83 72 chr9 122785245 122785772 -1290400 + RMER16 LTR ERVK 1 533 0 5 1521 1787 179 19 92 chr9 122785772 122786056 -1290116 - ORR1B1 LTR MaLR -134 260 1 5 1521 437 252 0 19 chr9 122786177 122786282 -1289890 - RMER4B LTR ERVK -134 451 349 5 1521 1216 127 39 90 chr9 122786284 122786443 -1289729 - RodERV21-int LTR ERV1 -163 4828 4672 5 1521 1284 79 15 40 chr9 122786443 122786642 -1289530 + B2_Mm2 SINE B2 1 194 -1 5 1521 1216 127 39 90 chr9 122786642 122786716 -1289456 - RodERV21-int LTR ERV1 -320 4671 4607 5 1521 324 294 122 24 chr9 122787279 122787443 -1288729 + MERVK26-int LTR ERVK 138 317 -6602 5 1521 8523 36 0 3 chr9 122787475 122788474 -1287698 - L1Md_T LINE L1 0 6582 5587 5 1521 235 62 0 0 chr9 122788603 122788635 -1287537 + RLTR10B LTR ERVK 5 36 -256 5 1521 2023 46 0 50 chr9 122788635 122788934 -1287238 + RLTR10B LTR ERVK 9 292 0 5 1521 2499 301 36 45 chr9 122789759 122790829 -1285343 + MERVK26-int LTR ERVK 2554 3614 -3305 5 1521 3279 307 60 41 chr9 122790894 122790946 -1285226 + MERVK26-int LTR ERVK 3715 3783 -3136 5 1521 468 0 0 0 chr9 122790946 122790998 -1285174 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1521 3279 307 60 41 chr9 122790998 122791515 -1284657 + MERVK26-int LTR ERVK 3784 4314 -2605 5 1521 2099 245 68 27 chr9 122791515 122791622 -1284550 + RMER19C LTR ERVK 1 115 -496 5 1521 252 0 0 0 chr9 122791622 122791650 -1284522 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5 1521 2099 245 68 27 chr9 122791650 122792129 -1284043 + RMER19C LTR ERVK 116 610 -1 5 1521 3279 307 60 41 chr9 122792129 122792655 -1283517 + MERVK26-int LTR ERVK 4315 4826 -2093 5 1521 3803 72 0 4 chr9 122792655 122793145 -1283027 - L1_Mus1 LINE L1 0 6567 6080 5 1521 3279 307 60 41 chr9 122793145 122793645 -1282527 + MERVK26-int LTR ERVK 4827 5342 -1577 5 1521 1208 68 0 0 chr9 122793665 122793813 -1282359 - B1_Mus1 SINE Alu 0 148 1 5 1521 275 303 62 27 chr9 122794427 122794573 -1281599 + MERVK26-int LTR ERVK 5822 5972 -947 5 1521 515 209 191 15 chr9 122795322 122795526 -1280646 + RMER21B LTR ERV1 328 567 -275 5 1521 279 0 0 0 chr9 122796355 122796386 -1279786 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1521 1091 200 146 43 chr9 122798250 122798579 -1277593 - ORR1C2 LTR MaLR -2 382 20 5 1521 684 249 140 20 chr9 122798621 122798871 -1277301 - B4 SINE B4 -11 281 2 5 1521 528 294 7 0 chr9 122800239 122800385 -1275787 + B1F SINE Alu 1 147 -2 5 1521 210 71 0 0 chr9 122800393 122800421 -1275751 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1521 773 226 0 14 chr9 122800585 122800733 -1275439 + B1_Mur1 SINE Alu 2 147 -2 5 1521 952 199 71 5 chr9 122800927 122801124 -1275048 + B3 SINE B2 3 212 -4 5 1521 21 0 0 0 chr9 122802985 122803006 -1273166 + AT_rich Low_complexity Low_complexity 1 21 0 5 1521 474 209 64 0 chr9 122803310 122803420 -1272752 - B1_Mur1 SINE Alu -31 118 2 5 1521 251 310 37 37 chr9 122804186 122804403 -1271769 + MMSAT4 Satellite Satellite 1 217 -5 5 1521 489 267 27 27 chr9 122804513 122805162 -1271010 + MMSAT4 Satellite Satellite 1 649 -1 5 1521 767 144 128 0 chr9 122805299 122805424 -1270748 + B1_Mus1 SINE Alu 1 141 -7 5 1521 550 227 191 6 chr9 122805757 122805930 -1270242 - B3 SINE B2 -10 206 2 5 1521 30 0 0 0 chr9 122805939 122805969 -1270203 + AT_rich Low_complexity Low_complexity 1 30 0 5 1521 1229 48 0 0 chr9 122805969 122806115 -1270057 - B1_Mus2 SINE Alu 0 147 2 5 1521 483 146 356 31 chr9 122806248 122806411 -1269761 - B3 SINE B2 0 216 1 5 1521 195 42 0 0 chr9 122806753 122806777 -1269395 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1521 347 350 43 0 chr9 122806942 122807059 -1269113 - B4A SINE B4 -170 122 1 5 1521 581 198 38 0 chr9 122807173 122807279 -1268893 + B1F2 SINE Alu 3 112 -37 5 1521 501 258 31 55 chr9 122807371 122807498 -1268674 - RSINE1 SINE B4 -38 127 4 5 1521 1041 129 117 24 chr9 122807527 122807733 -1268439 + RMER1A Other Other 802 1026 -4 5 1521 297 0 0 0 chr9 122807746 122807779 -1268393 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1521 383 267 11 34 chr9 122807779 122807868 -1268304 - RSINE1 SINE B4 -26 139 53 5 1521 384 294 124 68 chr9 122807869 122807956 -1268216 - ORR1E LTR MaLR -40 319 229 5 1521 671 188 43 14 chr9 122807956 122808096 -1268076 + B1_Mur4 SINE Alu 1 144 -6 5 1521 384 294 124 68 chr9 122808096 122808274 -1267898 - ORR1E LTR MaLR -131 228 39 5 1521 1516 290 50 32 chr9 122808324 122808908 -1267264 + Lx9 LINE L1 6300 6893 -751 5 1521 739 278 29 14 chr9 122809059 122809267 -1266905 - B3 SINE B2 -5 211 1 5 1521 1299 34 0 0 chr9 122809447 122809595 -1266577 + B1_Mus1 SINE Alu 1 148 0 5 1521 560 284 64 23 chr9 122810460 122810633 -1265539 + B3A SINE B2 4 183 -15 5 1521 771 151 65 0 chr9 122810725 122810841 -1265331 + B1_Mus1 SINE Alu 1 116 -32 5 1521 405 0 0 0 chr9 122810841 122810886 -1265286 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1521 771 151 65 0 chr9 122810886 122810908 -1265264 + B1_Mus1 SINE Alu 117 146 -2 5 1521 341 305 31 56 chr9 122810958 122811118 -1265054 + RMER15 LTR ERVL 284 439 -136 5 1521 266 341 24 0 chr9 122811502 122811625 -1264547 + LTR82B Low_complexity ERVL 536 661 -169 5 1521 191 341 102 0 chr9 122811767 122811855 -1264317 + L2a LINE L2 3018 3114 -312 5 1521 201 176 0 0 chr9 122812883 122812917 -1263255 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5 1521 822 173 7 28 chr9 122812919 122813062 -1263110 - B1_Mur1 SINE Alu -9 140 1 5 1521 207 0 0 0 chr9 122813088 122813111 -1263061 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5 1521 447 68 0 0 chr9 122813132 122813191 -1262981 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1522 351 0 0 0 chr9 122815592 122815631 -1260541 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1522 482 276 65 8 chr9 122815631 122815755 -1260417 - ID_B1 SINE B4 -9 215 85 5 1522 368 103 18 0 chr9 122815999 122816064 -1260108 + B1F SINE Alu 55 149 0 5 1522 458 151 0 0 chr9 122816252 122816325 -1259847 + PB1D9 SINE Alu 1 73 -47 5 1522 567 53 0 0 chr9 122816325 122816400 -1259772 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 1522 576 184 94 23 chr9 122816423 122816551 -1259621 - B3 SINE B2 -79 137 1 5 1522 347 218 139 0 chr9 122816648 122816749 -1259423 + L1MA8 LINE L1 6002 6116 -175 5 1522 359 317 6 6 chr9 122818261 122818531 -1257641 + MMSAT4 Satellite Satellite 1 270 0 5 1522 557 249 32 32 chr9 122818560 122819030 -1257142 + MMSAT4 Satellite Satellite 1 470 0 5 1522 654 200 138 0 chr9 122819110 122819240 -1256932 + B1_Mur1 SINE Alu 1 148 -1 5 1522 211 140 0 23 chr9 122819395 122819439 -1256733 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1522 445 247 45 26 chr9 122819614 122819768 -1256404 + L1ME4a LINE L1 5965 6121 -3 5 1522 776 123 23 0 chr9 122820208 122820338 -1255834 + B1_Mus1 SINE Alu 16 148 0 6 1522 22 0 0 0 chr9 122820376 122820398 -1255774 + AT_rich Low_complexity Low_complexity 1 22 0 6 1522 778 125 350 0 chr9 122820398 122820558 -1255614 - B3 SINE B2 0 216 1 6 1522 990 31 0 37 chr9 122820597 122820732 -1255440 + B1_Mus2 SINE Alu 13 142 -5 6 1522 574 212 64 28 chr9 122821407 122821548 -1254624 + RSINE1 SINE B4 2 147 -18 6 1522 21 36 0 0 chr9 122821642 122821670 -1254502 + AT_rich Low_complexity Low_complexity 1 28 0 6 1522 701 165 102 29 chr9 122821682 122821819 -1254353 + B1_Mus2 SINE Alu 1 147 0 6 1522 329 170 340 0 chr9 122822132 122822232 -1253940 + B1_Mur1 SINE Alu 15 148 -1 6 1522 244 267 12 96 chr9 122823159 122823242 -1252930 + L1M5 LINE L1 5598 5673 -451 6 1522 820 206 292 7 chr9 122824056 122824350 -1251822 + MTD LTR MaLR 28 405 -14 6 1522 751 290 37 33 chr9 122824878 122825092 -1251080 + B3 SINE B2 1 215 -1 6 1522 924 61 9 0 chr9 122825093 122825208 -1250964 - Lx3_Mus LINE L1 -537 6472 6357 6 1522 1735 42 23 0 chr9 122825890 122826104 -1250068 - Lx3_Mus LINE L1 -644 6365 6147 6 1522 3523 77 24 14 chr9 122826104 122826607 -1249565 + Lx3_Mus LINE L1 6502 7009 0 6 1522 1228 164 0 19 chr9 122826677 122826882 -1249290 + B3 SINE B2 10 210 -6 6 1522 370 254 0 0 chr9 122826936 122827034 -1249138 + ID4 SINE ID 8 105 -47 6 1522 234 394 43 0 chr9 122827122 122827216 -1248956 + B1F1 SINE Alu 1 98 -51 6 1522 228 100 0 0 chr9 122827225 122827265 -1248907 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 6 1522 417 316 30 15 chr9 122827270 122827405 -1248767 + B1F2 SINE Alu 8 144 -5 6 1522 448 146 11 11 chr9 122827485 122827575 -1248597 + GA-rich Low_complexity Low_complexity 3 92 0 6 1522 254 309 18 18 chr9 122828118 122828230 -1247942 + MMSAT4 Satellite Satellite 52 163 -5 6 1522 214 105 26 26 chr9 122828290 122828329 -1247843 + (TAATG)n Simple_repeat Simple_repeat 5 43 0 6 1522 263 314 7 68 chr9 122828365 122828484 -1247688 + MMSAT4 Satellite Satellite 31 145 -23 6 1522 3067 119 23 51 chr9 122828484 122828590 -1247582 - RLTR19 LTR ERVK 0 499 401 6 1522 1498 74 0 5 chr9 122828590 122828781 -1247391 + B2_Mm2 SINE B2 1 190 -5 6 1522 3067 119 23 51 chr9 122828781 122829186 -1246986 - RLTR19 LTR ERVK -99 400 2 6 1522 263 314 7 68 chr9 122829186 122829213 -1246959 + MMSAT4 Satellite Satellite 146 168 0 6 1522 234 306 28 9 chr9 122829393 122829502 -1246670 + MMSAT4 Satellite Satellite 37 147 -21 6 1522 321 342 16 49 chr9 122830038 122830264 -1245908 + MMSAT4 Satellite Satellite 1 218 0 6 1522 231 256 35 82 chr9 122830466 122830522 -1245650 + ID4_ SINE ID 2 58 -25 6 1522 2345 77 51 0 chr9 122830522 122830833 -1245339 + ORR1A2 LTR MaLR 1 327 0 6 1522 231 256 35 82 chr9 122830833 122830861 -1245311 + ID4_ SINE ID 59 82 -1 6 1522 310 235 38 29 chr9 122831326 122831443 -1244729 - PB1D7 SINE Alu -8 112 2 6 1522 467 194 0 11 chr9 122831625 122831719 -1244453 - B1_Mur1 SINE Alu -2 147 55 6 1522 227 211 69 14 chr9 122831930 122832002 -1244170 + L1MD3 LINE L1 7907 7982 -13 6 1522 189 0 0 0 chr9 122833005 122833026 -1243146 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1522 348 267 0 0 chr9 122833085 122833167 -1243005 + ID4 SINE ID 9 90 -62 6 1522 926 145 72 0 chr9 122833540 122833678 -1242494 + B1_Mur4 SINE Alu 1 148 -2 6 1522 396 40 0 0 chr9 122833802 122833852 -1242320 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 6 1522 221 161 0 0 chr9 122833899 122833930 -1242242 - B1_Mus1 SINE Alu -107 41 11 6 1522 241 385 21 10 chr9 122834624 122834721 -1241451 + MER5B DNA MER1_type 54 151 -27 6 1522 286 321 12 12 chr9 122834836 122834921 -1241251 - PB1D10 SINE Alu -32 85 1 6 1522 465 287 39 8 chr9 122835044 122835174 -1240998 - ID_B1 SINE B4 -25 199 66 6 1522 361 274 203 27 chr9 122835879 122836067 -1240105 - ID_B1 SINE B4 -1 223 3 6 1522 611 253 24 26 chr9 122836082 122836262 -1239910 + B3 SINE B2 5 183 -10 6 1522 469 290 96 30 chr9 122836271 122836406 -1239766 + RSINE1 SINE B4 3 146 -19 6 1522 23 0 0 0 chr9 122836416 122836439 -1239733 + AT_rich Low_complexity Low_complexity 1 23 0 6 1522 795 191 14 7 chr9 122836456 122836598 -1239574 + B1_Mur1 SINE Alu 7 149 0 6 1522 742 173 82 8 chr9 122836655 122836789 -1239383 + B1_Mus2 SINE Alu 3 146 -1 6 1522 431 258 75 11 chr9 122836832 122836926 -1239246 + RSINE1 SINE B4 60 159 -6 6 1522 663 201 14 48 chr9 122837077 122837223 -1238949 - B1_Mur2 SINE Alu -2 147 7 6 1522 330 324 13 74 chr9 122837418 122837526 -1238646 - ID_B1 SINE B4 -55 169 70 6 1522 325 316 20 40 chr9 122837534 122837633 -1238539 - RSINE1 SINE B4 -4 161 65 6 1522 334 164 36 0 chr9 122837872 122837927 -1238245 - B3 SINE B2 -157 59 3 6 1522 575 261 14 28 chr9 122837941 122838083 -1238089 - B1_Mur3 SINE Alu -7 142 3 6 1522 467 304 22 22 chr9 122839091 122839886 -1236286 + MMSAT4 Satellite Satellite 1 795 -5 6 1522 227 246 61 76 chr9 122840786 122840852 -1235320 + B4A SINE B4 1 65 -227 6 1522 679 252 67 13 chr9 122840871 122841079 -1235093 + B3 SINE B2 1 195 0 6 1522 440 274 95 32 chr9 122841130 122841288 -1234884 + B4A SINE B4 125 292 0 6 1522 311 197 16 0 chr9 122841632 122841693 -1234479 - B2_Mm2 SINE B2 -110 85 24 6 1522 761 157 111 7 chr9 122842091 122842226 -1233946 + B1_Mur2 SINE Alu 1 149 0 6 1522 832 194 229 0 chr9 122843097 122843267 -1232905 - B3 SINE B2 -6 210 2 6 1522 699 46 0 0 chr9 122843268 122843355 -1232817 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 6 1522 419 224 49 72 chr9 122843363 122843498 -1232674 - PB1D9 SINE Alu -5 144 1 6 1522 4440 207 107 68 chr9 122843940 122844325 -1231847 - MYSERV-int LTR ERVK -318 6232 5809 6 1522 540 0 0 0 chr9 122844325 122844385 -1231787 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1522 4440 207 107 68 chr9 122844385 122845251 -1230921 - MYSERV-int LTR ERVK -742 5808 4934 6 1522 1148 129 0 0 chr9 122845249 122845420 -1230752 - MYSERV-int LTR ERVK -4597 4362 4192 6 1522 261 0 0 0 chr9 122845437 122845466 -1230706 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1522 2412 158 28 21 chr9 122845466 122845584 -1230588 - RMER6B LTR ERVK -24 437 320 6 1522 230 0 0 32 chr9 122845584 122845615 -1230557 + (CAAAC)n Simple_repeat Simple_repeat 1 30 0 6 1522 2412 158 28 21 chr9 122845615 122845930 -1230242 - RMER6B LTR ERVK -142 319 1 6 1522 352 308 19 28 chr9 122846354 122846461 -1229711 + RSINE1 SINE B4 54 159 -6 6 1522 842 187 0 7 chr9 122846502 122846642 -1229530 - B1_Mus1 SINE Alu 0 148 10 6 1522 225 0 0 0 chr9 122847270 122847295 -1228877 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1522 1144 61 0 0 chr9 122847321 122847453 -1228719 + B1_Mm SINE Alu 5 136 -11 6 1522 272 48 24 0 chr9 122847453 122847495 -1228677 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 6 1522 450 254 40 25 chr9 122848125 122848578 -1227594 + MMSAT4 Satellite Satellite 1 459 0 6 1522 292 296 29 39 chr9 122848537 122848639 -1227533 + MurSatRep1 Unknown Unknown 1747 1847 -290 6 1522 2811 209 50 32 chr9 122848687 122849281 -1226891 - RLTR1D LTR ERV1 0 605 1 6 1522 451 243 118 64 chr9 122849876 122850118 -1226054 - RMER12 LTR ERVK 0 1322 1101 6 1522 3486 21 39 0 chr9 122850223 122850604 -1225568 + MTA_Mm LTR MaLR 1 396 0 6 1522 5861 68 12 2 chr9 122850740 122851537 -1224635 - RLTR22_Mus LTR ERVK -1003 805 1 6 1522 394 299 43 59 chr9 122852110 122852366 -1223806 - RLTR15 LTR ERVK -43 316 65 6 1522 263 234 46 15 chr9 122852562 122852627 -1223545 + L2c LINE L2 3319 3385 -2 6 1522 859 177 66 9 chr9 122852642 122852819 -1223353 - B3 SINE B2 -4 194 6 6 1522 331 329 20 40 chr9 122853454 122853606 -1222566 - B1F SINE Alu 0 149 1 6 1522 243 0 0 0 chr9 122853694 122853721 -1222451 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1522 361 266 85 0 chr9 122853772 122853866 -1222306 + PB1D9 SINE Alu 1 102 -18 6 1522 487 263 102 0 chr9 122854768 122854886 -1221286 - B1_Mur1 SINE Alu -14 135 6 6 1522 481 115 414 0 chr9 122855519 122855623 -1220549 + B1_Mus1 SINE Alu 1 147 -1 6 1522 668 271 0 0 chr9 122855639 122855772 -1220400 + B1_Mus2 SINE Alu 1 133 -14 6 1522 279 320 72 0 chr9 122856001 122856098 -1220074 - U6 snRNA snRNA -3 104 1 6 1522 505 242 121 0 chr9 122856102 122856234 -1219938 - B1F2 SINE Alu -1 148 1 6 1522 1360 164 79 121 chr9 122856310 122856650 -1219522 + ORR1C2 LTR MaLR 59 384 0 6 1522 225 249 145 101 chr9 122856763 122856942 -1219230 + L1ME4a LINE L1 5917 6103 -21 6 1522 1185 65 0 0 chr9 122857602 122857740 -1218432 + B1_Mus2 SINE Alu 1 138 -9 6 1522 308 301 89 8 chr9 122857876 122857994 -1218178 - MIRc SINE MIR -96 166 44 6 1522 1052 135 0 20 chr9 122858260 122858411 -1217761 + B1_Mur4 SINE Alu 2 149 -1 6 1522 23 0 0 0 chr9 122858470 122858493 -1217679 + AT_rich Low_complexity Low_complexity 1 23 0 6 1522 784 200 7 14 chr9 122858798 122858945 -1217227 - B1_Mus1 SINE Alu -1 147 2 6 1522 260 266 138 54 chr9 122860643 122860912 -1215260 - Tigger7 DNA MER2_type -34 2457 2176 6 1522 320 315 146 18 chr9 122860942 122861208 -1214964 - Tigger7 DNA MER2_type -2185 306 4 6 1522 261 269 99 77 chr9 122861310 122861483 -1214689 - B3A SINE B2 -1 215 68 6 1522 326 326 0 0 chr9 122861796 122861882 -1214290 - ID_B1 SINE B4 -29 195 110 6 1522 278 220 117 29 chr9 122861900 122862003 -1214169 - L1ME3 LINE L1 -157 6005 5894 6 1522 195 42 0 0 chr9 122862474 122862498 -1213674 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1522 451 314 16 0 chr9 122862498 122862622 -1213550 - B1_Mm SINE Alu -9 138 13 6 1522 266 290 111 16 chr9 122862909 122863035 -1213137 - L1MEc LINE L1 -5975 425 288 6 1522 367 207 125 9 chr9 122863087 122863199 -1212973 - L1MEc LINE L1 -6226 174 50 6 1522 315 0 0 0 chr9 122863332 122863367 -1212805 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1522 213 39 0 0 chr9 122863367 122863392 -1212780 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1522 544 256 128 0 chr9 122863740 122863920 -1212252 + MER2 DNA MER2_type 3 205 -140 7 1522 189 0 0 0 chr9 122863920 122863941 -1212231 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1522 1119 100 0 74 chr9 122863941 122864103 -1212069 - B1_Mur4 SINE Alu 0 150 1 7 1522 643 242 0 29 chr9 122864276 122864412 -1211760 + RSINE1 SINE B4 3 134 -31 7 1522 198 330 124 9 chr9 122864691 122864804 -1211368 - L2 LINE L2 -624 2795 2670 7 1522 1206 148 70 29 chr9 122864871 122865115 -1211057 - RLTR22_Mur LTR ERVK -5 1843 1590 7 1522 1058 58 22 0 chr9 122865213 122865350 -1210822 + B2_Mm2 SINE B2 6 145 -50 7 1522 315 0 0 0 chr9 122865350 122865385 -1210787 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1522 1222 69 7 0 chr9 122865443 122865588 -1210584 + B1_Mus2 SINE Alu 2 147 0 7 1522 4195 128 60 28 chr9 122865744 122866523 -1209649 - RLTR22_Mur LTR ERVK -1044 804 1 7 1522 232 290 32 0 chr9 122866975 122867037 -1209135 - L2 LINE L2 -855 2564 2501 7 1522 279 238 47 59 chr9 122867491 122867576 -1208596 - L2 LINE L2 -927 2492 2409 7 1522 300 264 62 94 chr9 122867582 122867678 -1208494 + PB1D9 SINE Alu 15 107 -13 7 1522 272 314 9 54 chr9 122867687 122867798 -1208374 - L2 LINE L2 -1071 2348 2243 7 1522 186 43 0 0 chr9 122868206 122868229 -1207943 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1522 276 77 0 0 chr9 122868322 122868361 -1207811 + (TTTC)n Simple_repeat Simple_repeat 4 42 0 7 1522 1148 121 16 37 chr9 122868361 122868550 -1207622 - B2_Mm2 SINE B2 0 195 11 7 1522 315 277 71 9 chr9 122869556 122869669 -1206503 - MER3 DNA MER1_type -49 160 41 7 1522 236 260 0 0 chr9 122869658 122869708 -1206464 + MER3 DNA MER1_type 160 209 0 7 1522 937 248 26 44 chr9 122869717 122869945 -1206227 - ID_B1 SINE B4 0 224 1 7 1522 930 155 13 20 chr9 122870106 122870257 -1205915 - B1_Mur4 SINE Alu 0 150 1 7 1522 302 277 117 0 chr9 122870427 122870521 -1205651 + B1F SINE Alu 1 105 -44 7 1522 557 262 57 18 chr9 122870566 122870795 -1205377 - MER33 DNA MER1_type -73 251 14 7 1522 210 118 0 0 chr9 122870996 122871030 -1205142 + (C)n Simple_repeat Simple_repeat 1 34 0 7 1522 690 102 287 0 chr9 122871030 122871138 -1205034 - B1_Mur3 SINE Alu -10 139 1 7 1522 999 238 19 19 chr9 122871141 122871351 -1204821 - B3 SINE B2 -6 210 1 7 1522 891 101 8 8 chr9 122871362 122871492 -1204680 + B2_Mm2 SINE B2 27 156 -39 7 1522 279 0 0 0 chr9 122871493 122871524 -1204648 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 7 1522 500 184 0 97 chr9 122871524 122871638 -1204534 - B3 SINE B2 -105 111 9 7 1522 634 191 77 49 chr9 122871653 122871796 -1204376 - B1_Mur2 SINE Alu -1 148 2 7 1522 375 23 0 0 chr9 122871796 122871840 -1204332 + (TTTTC)n Simple_repeat Simple_repeat 1 44 0 7 1522 27 29 0 0 chr9 122871842 122871876 -1204296 + AT_rich Low_complexity Low_complexity 1 34 0 7 1522 796 294 88 85 chr9 122871881 122872164 -1204008 + B4 SINE B4 9 292 0 7 1522 684 260 137 18 chr9 122872715 122872942 -1203230 - MLT1D LTR MaLR 0 505 252 7 1522 522 227 191 18 chr9 122872948 122873168 -1203004 - L1MC3 LINE L1 -1001 6994 6737 7 1522 544 306 63 16 chr9 122873193 122873445 -1202727 - L1MC3 LINE L1 -1211 6574 6311 7 1522 1287 207 186 25 chr9 122873465 122874014 -1202158 - Lx9 LINE L1 -1004 6640 5892 7 1522 246 128 0 0 chr9 122874184 122874223 -1201949 + (CTTG)n Simple_repeat Simple_repeat 2 40 0 7 1522 197 65 32 0 chr9 122874236 122874267 -1201905 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 7 1522 631 235 73 7 chr9 122874267 122874393 -1201779 - B1_Mur2 SINE Alu -13 136 1 7 1522 269 333 49 18 chr9 122874464 122874568 -1201604 - B4 SINE B4 -95 197 93 7 1522 287 211 70 0 chr9 122874511 122874568 -1201604 - PB1D9 SINE Alu -52 68 8 7 1522 257 246 27 80 chr9 122874568 122874584 -1201588 - MT2B LTR ERVL -374 225 157 7 1522 525 158 175 50 chr9 122874747 122874867 -1201305 + B1_Mm SINE Alu 11 145 -2 7 1522 642 242 37 22 chr9 122875612 122875747 -1200425 - B1_Mur2 SINE Alu -12 137 1 7 1522 561 242 25 0 chr9 122875810 122875930 -1200242 - ID_B1 SINE B4 -16 208 86 7 1522 225 0 0 0 chr9 122875931 122875956 -1200216 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1522 784 185 7 15 chr9 122875957 122876094 -1200078 - B1_Mus1 SINE Alu -12 136 1 7 1522 338 348 16 33 chr9 122876278 122876400 -1199772 - B1F1 SINE Alu 0 120 1 7 1522 421 185 103 77 chr9 122876405 122876522 -1199650 - B1_Mur4 SINE Alu 0 120 1 7 1522 958 236 29 53 chr9 122876574 122876820 -1199352 - Lx7 LINE L1 -382 7314 7075 7 1522 624 224 26 45 chr9 122877257 122877411 -1198761 - MER21B LTR ERV1 -185 678 528 7 1522 651 88 88 0 chr9 122877443 122877556 -1198616 + URR1A DNA MER1_type 79 201 -25 7 1522 280 266 19 113 chr9 122877655 122877761 -1198411 + Lx7 LINE L1 7081 7176 -520 7 1522 377 361 73 63 chr9 122877885 122878172 -1198000 - MTEa LTR MaLR -30 349 60 7 1522 303 93 0 0 chr9 122878403 122878446 -1197726 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 7 1522 189 0 0 0 chr9 122878445 122878466 -1197706 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1522 656 281 34 39 chr9 122878470 122878613 -1197559 - B3A SINE B2 -13 185 40 7 1522 2335 139 101 8 chr9 122878613 122878998 -1197174 - MTC LTR MaLR 0 421 1 7 1522 656 281 34 39 chr9 122878998 122879032 -1197140 - B3A SINE B2 -159 39 9 7 1522 302 250 62 0 chr9 122879054 122879134 -1197038 - MER21B LTR ERV1 -578 285 201 7 1522 27 0 0 0 chr9 122879314 122879341 -1196831 + AT_rich Low_complexity Low_complexity 1 27 0 7 1522 1345 108 43 0 chr9 122879352 122879537 -1196635 - B2_Mm2 SINE B2 -1 194 2 7 1522 1207 62 0 0 chr9 122879816 122879962 -1196210 + B1_Mus2 SINE Alu 2 147 0 7 1522 274 306 39 31 chr9 122879990 122880118 -1196054 - MIRb SINE MIR -20 248 120 7 1522 1818 185 80 11 chr9 122880133 122880483 -1195689 - ORR1D1 LTR MaLR 0 374 1 7 1522 1219 177 19 28 chr9 122880937 122881152 -1195020 + B3 SINE B2 4 216 0 7 1522 564 230 19 103 chr9 122881161 122881316 -1194856 + ID_B1 SINE B4 50 191 -33 7 1522 449 76 98 37 chr9 122881398 122881480 -1194692 + Lx LINE L1 6568 6654 0 7 1522 1364 242 90 14 chr9 122881501 122881845 -1194327 + ORR1D2 LTR MaLR 1 370 0 7 1522 263 126 426 19 chr9 122882047 122882150 -1194022 + B2_Mm2 SINE B2 47 191 -4 7 1522 4223 150 47 86 chr9 122882165 122883038 -1193134 - RMER19B LTR ERVK -13 889 51 7 1522 1357 93 60 0 chr9 122883073 122883255 -1192917 + B2_Mm2 SINE B2 1 193 -2 7 1522 1497 40 0 6 chr9 122883260 122883438 -1192734 + L1_Mus1 LINE L1 6391 6567 0 7 1522 894 146 36 7 chr9 122883630 122883768 -1192404 + B1_Mus1 SINE Alu 5 146 -2 7 1522 934 232 14 10 chr9 122883785 122883994 -1192178 - B3 SINE B2 -4 212 3 7 1522 413 305 24 109 chr9 122884005 122884215 -1191957 - B2_Mm1t SINE B2 -1 192 1 7 1522 613 304 31 19 chr9 122884290 122884451 -1191721 + RSINE1 SINE B4 3 165 0 7 1522 221 301 14 0 chr9 122885263 122885336 -1190836 + BC1_Mm scRNA scRNA 6 79 -73 7 1522 456 259 21 43 chr9 122885505 122885646 -1190526 + B1_Mur1 SINE Alu 2 139 -10 7 1522 511 244 39 47 chr9 122885850 122885979 -1190193 - B1_Mm SINE Alu -19 128 1 7 1522 1498 65 27 0 chr9 122886014 122886200 -1189972 - B2_Mm2 SINE B2 -4 191 1 7 1522 226 276 108 2 chr9 122886221 122886297 -1189875 - MIRb SINE MIR -172 96 8 7 1522 387 253 137 0 chr9 122886412 122886507 -1189665 + B1F SINE Alu 7 114 -35 7 1522 328 295 107 0 chr9 122886507 122886524 -1189648 + ID_B1 SINE B4 88 211 -13 7 1522 1226 48 7 0 chr9 122886623 122886768 -1189404 + B1_Mm SINE Alu 2 147 0 7 1522 287 296 50 30 chr9 122888144 122888245 -1187927 - MER47B DNA MER2_type 0 418 316 7 1522 251 287 67 38 chr9 122888274 122888379 -1187793 - MER47B DNA MER2_type -236 182 75 7 1522 270 207 0 0 chr9 122889011 122889069 -1187103 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 7 1522 278 308 11 11 chr9 122889075 122889167 -1187005 - PB1D10 SINE Alu -25 92 1 7 1522 403 283 27 20 chr9 122889513 122889661 -1186511 - MER58B DNA MER1_type -5 336 188 7 1522 1041 183 25 64 chr9 122889662 122890202 -1185970 + RMER17C LTR ERVK 1 410 0 7 1522 870 151 20 40 chr9 122890940 122891092 -1185080 - B1_Mur4 SINE Alu 0 150 2 7 1522 377 288 59 22 chr9 122891092 122891227 -1184945 - L1MC1 LINE L1 -6 6327 6188 7 1522 218 32 32 0 chr9 122891238 122891269 -1184903 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1522 5705 133 71 62 chr9 122891498 122892705 -1183467 + RMER12 LTR ERVK 1 1218 -104 7 1522 780 283 79 61 chr9 122892811 122893202 -1182970 + RMER13A LTR ERVK 2 399 -461 7 1522 360 250 25 0 chr9 122894772 122894852 -1181320 + B1F SINE Alu 10 91 -58 7 1522 769 176 261 0 chr9 122894872 122895037 -1181135 - B3 SINE B2 -8 208 1 7 1522 1020 163 126 5 chr9 122896280 122896471 -1179701 - B3 SINE B2 0 216 3 7 1522 553 172 8 8 chr9 122896482 122896605 -1179567 + CT-rich Low_complexity Low_complexity 1 123 0 7 1522 267 305 2 0 chr9 122896605 122896703 -1179469 - ID4 SINE ID -49 103 5 7 1522 792 231 82 43 chr9 122897164 122897372 -1178800 + B3 SINE B2 1 216 0 7 1522 501 268 98 52 chr9 122897391 122897564 -1178608 + B4 SINE B4 2 182 -110 7 1522 237 311 97 32 chr9 122897669 122897762 -1178410 + PB1D7 SINE Alu 4 102 -18 7 1522 583 265 35 24 chr9 122897807 122897977 -1178195 + B3A SINE B2 9 180 -18 7 1522 33 0 0 0 chr9 122897990 122898023 -1178149 + AT_rich Low_complexity Low_complexity 1 33 0 7 1522 1306 81 6 11 chr9 122898161 122898336 -1177836 - B2_Mm2 SINE B2 -19 176 3 8 1522 28 29 0 0 chr9 122898349 122898384 -1177788 + AT_rich Low_complexity Low_complexity 1 35 0 8 1522 271 172 35 0 chr9 122899262 122899320 -1176852 - PB1D9 SINE Alu -13 107 48 8 1522 333 253 12 37 chr9 122899423 122899505 -1176667 - ID4_ SINE ID -3 80 1 8 1522 658 102 28 0 chr9 122899563 122899671 -1176501 - B1_Mus2 SINE Alu -5 142 32 8 1522 530 245 86 7 chr9 122901344 122901484 -1174688 - ID_B1 SINE B4 -1 223 73 8 1522 1177 70 0 0 chr9 122901534 122901677 -1174495 - B1_Mus1 SINE Alu -5 143 1 8 1522 326 103 42 42 chr9 122901720 122901791 -1174381 + B1_Mur4 SINE Alu 80 150 0 8 1522 521 27 0 52 chr9 122901797 122901874 -1174298 + BC1_Mm scRNA scRNA 2 74 -78 8 1522 197 0 71 0 chr9 122901874 122901902 -1174270 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 8 1522 399 21 0 0 chr9 122901907 122901955 -1174217 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1522 743 224 97 0 chr9 122902319 122902515 -1173657 - B3 SINE B2 0 216 2 8 1522 1105 95 7 0 chr9 122902686 122902833 -1173339 + B1_Mus1 SINE Alu 1 148 0 8 1522 21 0 0 0 chr9 122902871 122902892 -1173280 + AT_rich Low_complexity Low_complexity 1 21 0 8 1522 1112 88 0 7 chr9 122903288 122903436 -1172736 - B1_Mus2 SINE Alu 0 147 1 8 1522 354 236 90 0 chr9 122903652 122903741 -1172431 + B3 SINE B2 2 98 -118 8 1522 4945 48 18 0 chr9 122903800 122904398 -1171774 - L1_Mus1 LINE L1 0 6567 5959 8 1522 2049 32 36 0 chr9 122904398 122904647 -1171525 + L1_Mus1 LINE L1 5746 6003 -564 8 1522 696 191 15 0 chr9 122904647 122904778 -1171394 + B3 SINE B2 84 216 0 8 1522 201 39 0 0 chr9 122905571 122905597 -1170575 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 8 1522 650 272 96 59 chr9 122905739 122906009 -1170163 + B4 SINE B4 4 283 -9 8 1522 219 293 49 0 chr9 122906221 122906303 -1169869 + PB1D10 SINE Alu 25 110 -7 8 1522 424 297 9 0 chr9 122906591 122906702 -1169470 + ID_B1 SINE B4 82 193 -31 8 1522 273 29 0 0 chr9 122907245 122907279 -1168893 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1522 336 240 150 0 chr9 122907279 122907372 -1168800 - PB1D9 SINE Alu -8 112 5 8 1522 21 0 0 0 chr9 122907468 122907489 -1168683 + AT_rich Low_complexity Low_complexity 1 21 0 8 1522 351 0 0 0 chr9 122908469 122908508 -1167664 + (TGAG)n Simple_repeat Simple_repeat 4 42 0 8 1522 261 281 16 88 chr9 122908767 122908892 -1167280 - PB1D10 SINE Alu -1 116 1 8 1522 204 40 0 0 chr9 122908977 122909002 -1167170 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1522 1048 51 73 0 chr9 122909002 122909139 -1167033 - B1_Mm SINE Alu 0 147 1 8 1522 288 111 0 0 chr9 122909331 122909376 -1166796 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 8 1522 252 59 0 0 chr9 122909389 122909423 -1166749 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 8 1522 461 238 28 37 chr9 122909424 122909533 -1166639 - PB1D9 SINE Alu -12 108 1 8 1522 467 196 232 0 chr9 122910429 122910541 -1165631 - B1F2 SINE Alu -10 139 2 8 1522 369 266 97 0 chr9 122910546 122910659 -1165513 - B1F2 SINE Alu -2 147 24 8 1522 757 169 7 7 chr9 122910713 122910856 -1165316 - B1_Mus1 SINE Alu 0 148 6 8 1522 297 231 17 133 chr9 122910759 122910879 -1165293 - MT2B LTR ERVL -344 257 152 8 1522 576 0 0 0 chr9 122910880 122910944 -1165228 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 1522 951 67 205 7 chr9 122911594 122911745 -1164427 - B2_Mm2 SINE B2 -14 181 1 8 1522 673 203 43 0 chr9 122911771 122911909 -1164263 - B1_Mur1 SINE Alu -1 148 5 8 1522 436 265 24 44 chr9 122912082 122912222 -1163950 + B1F SINE Alu 13 149 0 8 1522 382 268 181 38 chr9 122912306 122912620 -1163552 - ORR1E LTR MaLR 0 359 1 8 1522 268 233 105 0 chr9 122913403 122913489 -1162683 + B3A SINE B2 1 95 -103 8 1522 351 0 0 0 chr9 122913850 122913889 -1162283 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 1522 270 73 0 0 chr9 122913890 122913931 -1162241 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 8 1522 287 224 26 13 chr9 122913949 122914026 -1162146 - PB1D9 SINE Alu 0 120 43 8 1522 340 259 24 0 chr9 122914037 122914122 -1162050 + RSINE1 SINE B4 13 99 -66 8 1522 383 271 28 0 chr9 122914338 122914445 -1161727 + PB1D9 SINE Alu 3 112 -8 8 1522 511 156 213 0 chr9 122914532 122914654 -1161518 + B1_Mur3 SINE Alu 1 148 -1 8 1522 389 36 18 0 chr9 122914655 122914710 -1161462 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1522 573 316 22 18 chr9 122914732 122914934 -1161238 - B4A SINE B4 -54 238 39 8 1522 579 172 46 23 chr9 122914942 122915073 -1161099 - MTD LTR MaLR -14 405 272 8 1522 207 0 0 0 chr9 122915289 122915312 -1160860 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1522 315 0 0 0 chr9 122915841 122915876 -1160296 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1522 1322 104 16 0 chr9 122916116 122916299 -1159873 - B2_Mm2 SINE B2 -8 187 2 8 1522 284 340 56 19 chr9 122916907 122917015 -1159157 - PB1D10 SINE Alu -3 114 3 8 1522 223 225 26 90 chr9 122917090 122917168 -1159004 - B1_Mur1 SINE Alu -10 139 67 8 1522 412 286 42 0 chr9 122917136 122917255 -1158917 - B1F SINE Alu -22 127 4 8 1522 387 73 0 0 chr9 122917276 122917331 -1158841 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1522 418 290 98 67 chr9 122917334 122917831 -1158341 - L1MA7 LINE L1 -83 6208 5676 8 1522 331 226 115 19 chr9 122917848 122917952 -1158220 + B4 SINE B4 6 119 -173 8 1522 270 250 87 26 chr9 122918130 122918245 -1157927 - L1MA7 LINE L1 -618 5673 5552 8 1522 325 253 60 0 chr9 122919468 122919551 -1156621 - B4A SINE B4 -2 290 203 8 1522 383 251 106 25 chr9 122919819 122919982 -1156190 - B4 SINE B4 -120 172 4 8 1522 309 273 0 75 chr9 122919988 122920095 -1156077 - PB1D10 SINE Alu -1 116 18 8 1522 542 248 38 0 chr9 122920424 122920557 -1155615 - B1_Mur2 SINE Alu -11 138 1 8 1522 32 0 0 0 chr9 122920965 122920997 -1155175 + AT_rich Low_complexity Low_complexity 1 32 0 8 1522 23 54 0 0 chr9 122921220 122921257 -1154915 + AT_rich Low_complexity Low_complexity 1 37 0 8 1522 469 128 0 0 chr9 122921555 122921633 -1154539 - MusHAL1 LINE L1 -627 2085 2008 8 1522 235 180 0 0 chr9 122921633 122921683 -1154489 + URR1B DNA MER1_type 176 225 0 8 1522 522 207 33 33 chr9 122921915 122922035 -1154137 - PB1D9 SINE Alu 0 120 1 8 1522 966 246 14 10 chr9 122922107 122922316 -1153856 - B3 SINE B2 -5 211 2 8 1522 221 316 18 0 chr9 122923249 122923306 -1152866 + B1F SINE Alu 20 77 -72 8 1522 467 269 35 7 chr9 122923693 122923835 -1152337 - RSINE1 SINE B4 -19 146 1 8 1522 637 182 15 60 chr9 122923867 122924001 -1152171 - B3 SINE B2 -4 212 85 8 1522 330 279 75 41 chr9 122924110 122924256 -1151916 - B3 SINE B2 -2 214 64 8 1522 241 175 84 113 chr9 122924815 122924886 -1151286 - B1_Mur1 SINE Alu -1 148 80 8 1522 373 323 45 50 chr9 122925053 122925255 -1150917 - ORR1E LTR MaLR -9 350 150 8 1522 684 162 7 58 chr9 122925257 122925395 -1150777 + B1_Mur4 SINE Alu 11 141 -9 8 1522 535 272 19 25 chr9 122925395 122925557 -1150615 - ORR1E LTR MaLR -198 161 1 8 1522 399 246 0 60 chr9 122926912 122927029 -1149143 - PB1D7 SINE Alu 0 120 11 8 1522 212 175 0 0 chr9 122927505 122927545 -1148627 + T-rich Low_complexity Low_complexity 1 40 0 8 1522 1060 76 0 27 chr9 122927545 122927694 -1148478 - B1_Mus2 SINE Alu 0 147 3 8 1522 900 255 25 0 chr9 122927850 122928046 -1148126 - B3 SINE B2 -14 202 2 8 1522 3245 42 31 0 chr9 122928059 122928443 -1147729 - MTA_Mm LTR MaLR 0 396 1 8 1522 350 291 171 9 chr9 122928470 122928581 -1147591 - ID_B1 SINE B4 -12 212 84 8 1522 25 31 0 0 chr9 122928984 122929016 -1147156 + AT_rich Low_complexity Low_complexity 1 32 0 8 1522 427 203 91 6 chr9 122929318 122929436 -1146736 - B1_Mur2 SINE Alu -13 136 1 8 1522 514 208 92 0 chr9 122929586 122929716 -1146456 - B1F1 SINE Alu -7 142 1 8 1522 180 0 0 0 chr9 122930367 122930387 -1145785 + (CTCGG)n Simple_repeat Simple_repeat 3 22 0 8 1522 438 63 0 37 chr9 122930710 122930792 -1145380 + (CGGGG)n Simple_repeat Simple_repeat 1 79 0 8 1522 216 289 65 28 chr9 122933104 122933211 -1142961 - MIRc SINE MIR -137 131 21 8 1522 893 59 0 0 chr9 122933227 122933345 -1142827 - B1_Mus1 SINE Alu 0 148 31 8 1522 1309 120 5 0 chr9 122933388 122933579 -1142593 - B2_Mm1t SINE B2 0 193 2 8 1522 934 215 29 20 chr9 122933852 122934056 -1142116 + B3 SINE B2 5 210 -6 8 1522 231 61 0 0 chr9 122934526 122934559 -1141613 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 8 1522 780 276 133 57 chr9 122934560 122935056 -1141116 - L1MB7 LINE L1 -55 6129 5596 8 1522 520 236 0 31 chr9 122935066 122935193 -1140979 - B1_Mur1 SINE Alu 0 149 27 8 1522 309 286 22 0 chr9 122935195 122935286 -1140886 - L1M4 LINE L1 -575 5605 5513 8 1522 487 248 205 5 chr9 122935423 122935618 -1140554 - MTE2b LTR MaLR 0 379 146 8 1522 335 89 18 0 chr9 122936038 122936094 -1140078 + (CCCTAA)n Simple_repeat Simple_repeat 2 58 0 8 1522 457 180 60 0 chr9 122936172 122936268 -1139904 + MTC LTR MaLR 1 102 -319 8 1522 656 217 0 14 chr9 122936268 122936413 -1139759 + B1_Mur4 SINE Alu 3 145 -5 8 1522 189 0 0 0 chr9 122936619 122936640 -1139532 + (GA)n Simple_repeat Simple_repeat 1 21 0 8 1522 195 42 0 0 chr9 122936640 122936664 -1139508 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 8 1522 364 157 19 333 chr9 122936897 122936994 -1139178 - L1M4 LINE L1 -908 5238 5169 8 1522 1099 150 88 5 chr9 122936994 122937188 -1138984 - B3 SINE B2 -5 211 2 9 1522 364 136 66 33 chr9 122937188 122937267 -1138905 - L1M4 LINE L1 -975 5171 5089 8 1522 190 329 110 0 chr9 122937344 122937426 -1138746 - L2 LINE L2 -595 2824 2734 9 1522 367 246 47 169 chr9 122937440 122937558 -1138614 + B4A SINE B4 2 222 -68 9 1522 842 134 0 0 chr9 122937558 122937692 -1138480 + B1_Mur4 SINE Alu 12 145 -5 9 1522 910 195 0 116 chr9 122937696 122937928 -1138244 - B3 SINE B2 -11 205 1 9 1522 328 102 0 0 chr9 122937940 122937989 -1138183 - B3 SINE B2 -165 51 3 9 1522 379 324 27 0 chr9 122937997 122938108 -1138064 - PB1D10 SINE Alu 0 117 4 9 1522 354 232 272 62 chr9 122938464 122938685 -1137487 + B4A SINE B4 25 291 -1 9 1522 538 172 0 53 chr9 122938738 122938928 -1137244 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1522 407 213 7 0 chr9 122938970 122939106 -1137066 + (CA)n Simple_repeat Simple_repeat 1 137 0 9 1522 573 194 0 0 chr9 122939204 122939369 -1136803 + (CA)n Simple_repeat Simple_repeat 1 165 0 9 1522 324 94 0 0 chr9 122939415 122939468 -1136704 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1522 267 242 0 0 chr9 122939534 122939633 -1136539 + (CA)n Simple_repeat Simple_repeat 1 99 0 9 1522 268 152 15 15 chr9 122939865 122939932 -1136240 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 9 1522 468 0 0 0 chr9 122940070 122940122 -1136050 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1522 335 237 17 220 chr9 122940382 122940438 -1135734 - B1F2 SINE Alu -7 142 5 9 1522 531 226 60 17 chr9 122940438 122940555 -1135617 - ID_B1 SINE B4 -17 207 86 9 1522 278 263 47 36 chr9 122942638 122942762 -1133410 + B4A SINE B4 64 229 -63 9 1522 792 264 10 35 chr9 122942762 122942962 -1133210 + B3A SINE B2 3 197 -1 9 1522 267 330 79 46 chr9 122942962 122943053 -1133119 + B4A SINE B4 199 285 -7 9 1522 2442 153 32 12 chr9 122944592 122945002 -1131170 + MTC LTR MaLR 1 418 -3 9 1522 899 117 309 0 chr9 122945002 122945163 -1131009 + B3 SINE B2 1 212 -4 9 1523 696 196 33 3 chr9 122945610 122945742 -1130430 - B3 SINE B2 -55 138 1 9 1523 21 36 0 0 chr9 122945806 122945834 -1130338 + AT_rich Low_complexity Low_complexity 1 28 0 9 1523 1186 178 34 0 chr9 122945834 122946042 -1130130 - B3 SINE B2 -1 215 1 9 1523 325 217 167 42 chr9 122946147 122946165 -1130007 - ID_B1 SINE B4 -11 213 122 9 1523 376 158 229 10 chr9 122946165 122946261 -1129911 - B1F SINE Alu -29 120 4 9 1523 229 304 14 0 chr9 122946297 122946366 -1129806 - L1MEd LINE L1 -5443 676 607 9 1523 1420 233 93 10 chr9 122946571 122946883 -1129289 - MTD LTR MaLR 0 419 82 9 1523 2402 216 88 40 chr9 122946855 122947472 -1128700 - MTC-int LTR MaLR -352 906 261 9 1523 1938 194 28 5 chr9 122947898 122948292 -1127880 + Lx9 LINE L1 7060 7462 -182 9 1523 896 0 10 0 chr9 122948293 122948397 -1127775 + (GA)n Simple_repeat Simple_repeat 2 106 0 9 1523 2031 140 123 20 chr9 122948869 122949226 -1126946 - ORR1B1 LTR MaLR 0 394 1 9 1523 1078 221 73 52 chr9 122949972 122950258 -1125914 + B4A SINE B4 1 292 0 9 1523 589 191 0 34 chr9 122950985 122951104 -1125068 + B1_Mur4 SINE Alu 13 127 -23 9 1523 186 222 22 11 chr9 122951106 122951197 -1124975 + GA-rich Low_complexity Low_complexity 4 95 0 9 1523 24 32 0 0 chr9 122952214 122952245 -1123927 + AT_rich Low_complexity Low_complexity 1 31 0 9 1523 643 33 11 32 chr9 122952303 122952398 -1123774 + (TG)n Simple_repeat Simple_repeat 1 93 0 9 1523 2287 29 11 0 chr9 122952442 122952718 -1123454 + MERVL-int LTR ERVL 4743 5021 -464 9 1523 405 291 3 13 chr9 122952718 122952837 -1123335 - B3A SINE B2 -73 120 3 9 1523 1351 46 86 0 chr9 122952845 122953019 -1123153 - B2_Mm1a SINE B2 -3 190 2 9 1523 349 314 56 39 chr9 122953337 122953516 -1122656 - MIR SINE MIR -46 216 35 9 1523 34 0 0 0 chr9 122954673 122954707 -1121465 + AT_rich Low_complexity Low_complexity 1 34 0 9 1523 649 222 36 6 chr9 122955002 122955176 -1120996 - B3 SINE B2 -17 181 2 9 1523 689 222 21 0 chr9 122955321 122955465 -1120707 - B1_Mur3 SINE Alu 0 149 3 9 1523 391 191 126 63 chr9 122956019 122956141 -1120031 + PB1D9 SINE Alu 20 148 -1 9 1523 187 88 0 128 chr9 122956331 122956409 -1119763 + (CACAC)n Simple_repeat Simple_repeat 1 68 0 9 1523 900 271 106 51 chr9 122956409 122956500 -1119672 - RMER21B LTR ERV1 -275 567 465 9 1523 1593 47 11 0 chr9 122956500 122956691 -1119481 + B2_Mm1a SINE B2 1 193 0 9 1523 900 271 106 51 chr9 122956691 122956891 -1119281 - RMER21B LTR ERV1 -378 464 260 9 1523 314 45 23 0 chr9 122956930 122956974 -1119198 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1523 1049 186 64 15 chr9 122957074 122957276 -1118896 - B3 SINE B2 -4 212 1 9 1523 181 271 0 20 chr9 122958012 122958061 -1118111 + L3 LINE CR1 3554 3601 -888 9 1523 1167 126 7 3 chr9 122958232 122958518 -1117654 + (TGGA)n Simple_repeat Simple_repeat 1 287 0 9 1523 369 0 0 0 chr9 122958616 122958657 -1117515 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1523 405 0 0 0 chr9 122958657 122958701 -1117471 + (GA)n Simple_repeat Simple_repeat 1 45 0 9 1523 369 252 188 21 chr9 122959332 122959564 -1116608 - Charlie1 DNA MER1_type 0 2781 2557 9 1523 502 269 186 99 chr9 122959552 122959611 -1116561 - Charlie1 DNA MER1_type -158 2623 2557 9 1523 1451 80 16 0 chr9 122959611 122959799 -1116373 + B2_Mm2 SINE B2 1 191 -4 9 1523 502 269 186 99 chr9 122959799 122960061 -1116111 - Charlie1 DNA MER1_type -225 2556 2274 9 1523 204 67 0 0 chr9 122960604 122960634 -1115538 + (TTCTG)n Simple_repeat Simple_repeat 5 34 0 9 1523 933 141 8 1 chr9 122961105 122961242 -1114930 + B1_Mur4 SINE Alu 14 280 -31 9 1523 1050 99 35 0 chr9 122961242 122961384 -1114788 + B1_Mm SINE Alu 1 147 0 9 1523 233 281 115 70 chr9 122961384 122961403 -1114769 + FAM SINE Alu 281 310 -1 9 1523 215 31 31 0 chr9 122961404 122961436 -1114736 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 9 1523 225 94 0 0 chr9 122961539 122961571 -1114601 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 9 1523 491 271 96 14 chr9 122962110 122962256 -1113916 - RSINE1 SINE B4 -5 160 3 9 1523 909 170 7 0 chr9 122962601 122962748 -1113424 + B1_Mur4 SINE Alu 3 150 0 9 1523 315 0 0 0 chr9 122962754 122962789 -1113383 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1523 1311 111 16 0 chr9 122963473 122963662 -1112510 - B2_Mm2 SINE B2 -2 193 2 9 1523 547 101 64 9 chr9 122963743 122963853 -1112319 + Lx9 LINE L1 7520 7635 -9 9 1523 273 283 141 0 chr9 122963869 122963968 -1112204 - PB1 SINE Alu -2 125 13 9 1523 325 272 99 0 chr9 122964017 122964098 -1112074 + ID_B1 SINE B4 90 178 -46 9 1523 295 283 98 29 chr9 122964098 122964119 -1112053 + PB1D10 SINE Alu 9 117 0 9 1523 267 79 0 0 chr9 122964148 122964186 -1111986 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 9 1523 366 23 0 0 chr9 122966361 122966404 -1109768 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1523 782 209 7 0 chr9 122966404 122966543 -1109629 - B1_Mur1 SINE Alu -8 141 2 9 1523 227 238 94 59 chr9 122966549 122966634 -1109538 - BC1_Mm scRNA scRNA -48 104 17 9 1523 1994 158 14 25 chr9 122966717 122967080 -1109092 - RLTR15 LTR ERVK 0 359 1 9 1523 239 339 75 80 chr9 122967229 122967253 -1108919 - B3A SINE B2 0 198 1 9 1523 709 288 6 69 chr9 122967253 122967428 -1108744 - RSINE1 SINE B4 0 165 2 9 1523 343 268 18 18 chr9 122967847 122967961 -1108211 - L1M4 LINE L1 -6125 417 304 9 1523 648 226 43 7 chr9 122968097 122968235 -1107937 - B1F SINE Alu -6 143 1 9 1523 1619 228 96 8 chr9 122968486 122968871 -1107301 - MTD LTR MaLR 0 419 1 9 1523 3297 206 158 149 chr9 122968871 122969909 -1106263 - MTD-int LTR MaLR 0 1258 189 9 1523 876 141 56 7 chr9 122969909 122970052 -1106120 + B1_Mur4 SINE Alu 1 150 0 9 1523 3297 206 158 149 chr9 122970052 122970259 -1105913 - MTD-int LTR MaLR -1070 188 2 9 1523 1662 207 90 24 chr9 122970274 122970650 -1105522 - MTD LTR MaLR 0 419 19 9 1523 903 228 40 45 chr9 122972438 122972640 -1103532 + B3 SINE B2 15 215 -1 9 1523 3049 55 3 3 chr9 122973045 122973429 -1102743 - MTB LTR MaLR -16 384 1 9 1523 378 203 0 0 chr9 122974328 122974387 -1101785 - B1_Mur1 SINE Alu -22 127 69 9 1523 247 288 12 59 chr9 122974412 122974497 -1101675 - ID4_ SINE ID 0 83 3 9 1523 784 63 9 35 chr9 122974518 122974633 -1101539 - B1_Mus1 SINE Alu -36 112 1 9 1523 501 219 69 55 chr9 122974633 122974675 -1101497 - B4 SINE B4 -202 90 47 9 1523 480 262 29 123 chr9 122975238 122975274 -1100898 + B4 SINE B4 65 218 -74 9 1523 913 157 0 0 chr9 122975274 122975408 -1100764 + B1_Mur4 SINE Alu 9 142 -8 9 1523 218 191 44 0 chr9 122975421 122975489 -1100683 + A-rich Low_complexity Low_complexity 1 71 0 9 1523 1677 191 177 0 chr9 122976897 122977242 -1098930 - MTD LTR MaLR -8 411 6 9 1523 331 261 179 9 chr9 122978649 122978761 -1097411 - B1_Mur2 SINE Alu -1 148 18 9 1523 802 83 356 0 chr9 122980063 122980195 -1095977 + B2_Mm1t SINE B2 1 179 -14 9 1523 445 73 0 0 chr9 122980223 122980278 -1095894 + B2_Mm2 SINE B2 47 101 -94 9 1523 22 35 0 0 chr9 122980287 122980316 -1095856 + AT_rich Low_complexity Low_complexity 1 29 0 9 1523 385 187 87 0 chr9 122980965 122981064 -1095108 + PB1D9 SINE Alu 41 147 0 9 1523 227 295 73 16 chr9 122981334 122981458 -1094714 + L1MB5 LINE L1 6044 6174 0 9 1523 495 254 8 85 chr9 122981585 122981714 -1094458 - PB1 SINE Alu -1 126 8 9 1523 363 23 0 0 chr9 122982277 122982321 -1093851 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1523 1103 43 65 0 chr9 122982397 122982535 -1093637 + B1_Mm SINE Alu 1 147 0 9 1523 430 298 10 0 chr9 122983696 122983800 -1092372 - PB1 SINE Alu -2 125 21 9 1523 604 266 21 7 chr9 122983824 122983968 -1092204 - ID_B1 SINE B4 0 224 79 9 1523 21 0 0 0 chr9 122987116 122987137 -1089035 + AT_rich Low_complexity Low_complexity 1 21 0 9 1523 234 108 30 15 chr9 122987863 122987929 -1088243 + A-rich Low_complexity Low_complexity 4 70 0 1 1523 207 0 0 0 chr9 122988240 122988263 -1087909 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1523 405 39 0 0 chr9 122990521 122990572 -1085600 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 1 1523 459 0 0 0 chr9 122992086 122992137 -1084035 + (CTA)n Simple_repeat Simple_repeat 2 52 0 1 1523 291 28 0 0 chr9 122992140 122992176 -1083996 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1523 805 162 80 7 chr9 122994190 122994327 -1081845 - B1_Mur3 SINE Alu -1 148 2 1 1523 1364 129 41 9 chr9 122996104 122996323 -1079849 + URR1A DNA MER1_type 1 226 0 1 1523 393 110 0 0 chr9 122996467 122996540 -1079632 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 1 1523 213 363 39 0 chr9 122997316 122997418 -1078754 + MIRb SINE MIR 35 140 -128 1 1523 183 213 0 41 chr9 122999434 122999483 -1076689 - MIRc SINE MIR -190 78 32 1 1523 387 132 59 0 chr9 122999932 123000000 -1076172 - B2_Mm1t SINE B2 0 193 122 1 1523 770 137 17 0 chr9 123000000 123000117 -1076055 - B2_Mm1t SINE B2 -73 120 2 1 1523 308 315 73 27 chr9 123000808 123000958 -1075214 - L1ME4a LINE L1 -2 6122 5966 2 1523 187 326 84 14 chr9 123001673 123001816 -1074356 + L2b LINE L2 3183 3335 -40 3 1523 342 348 62 47 chr9 123001857 123002068 -1074104 - MIR SINE MIR -4 258 45 4 1523 1324 211 86 48 chr9 123002232 123002402 -1073770 + RMER3D-int LTR ERVK 2213 2381 -461 5 1523 1276 21 0 0 chr9 123002402 123002547 -1073625 + B1_Mm SINE Alu 1 145 -2 6 1523 252 0 0 0 chr9 123002547 123002575 -1073597 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 7 1523 1324 211 86 48 chr9 123002575 123002777 -1073395 + RMER3D-int LTR ERVK 2382 2599 -243 5 1523 787 29 29 0 chr9 123002785 123002889 -1073283 - B1_Mm SINE Alu 0 147 41 8 1523 244 362 38 0 chr9 123003139 123003244 -1072928 - L4 LINE RTE -119 1910 1802 9 1523 8830 149 30 12 chr9 123003419 123004856 -1071316 - MERVL_2A-int LTR ERVL -2113 3648 2186 1 1523 1104 220 86 119 chr9 123005769 123006140 -1070032 + MTE2a LTR MaLR 1 359 -20 1 1523 936 90 15 0 chr9 123006664 123006798 -1069374 + B1_Mm SINE Alu 12 147 0 1 1523 571 120 259 0 chr9 123006836 123006944 -1069228 + B1_Mur3 SINE Alu 1 136 -13 1 1523 290 316 98 92 chr9 123007171 123007488 -1068684 + L2b LINE L2 2986 3304 -71 1 1523 688 190 86 14 chr9 123007637 123007776 -1068396 + B1_Mur2 SINE Alu 1 149 0 1 1523 216 0 0 0 chr9 123007784 123007808 -1068364 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1523 1257 34 0 0 chr9 123008390 123008537 -1067635 + B1_Mus2 SINE Alu 1 147 0 1 1523 255 218 269 0 chr9 123008875 123008953 -1067219 - PB1D9 SINE Alu -20 100 2 1 1523 264 212 50 117 chr9 123009873 123010004 -1066168 - MIR SINE MIR -118 158 35 1 1523 896 143 7 7 chr9 123010479 123010620 -1065552 - B1_Mur3 SINE Alu -8 141 1 2 1523 444 191 170 0 chr9 123012083 123012177 -1063995 - PB1D9 SINE Alu -10 110 1 2 1523 1532 112 158 95 chr9 123012966 123013313 -1062859 - RMER4A LTR ERVK -95 371 3 2 1523 668 262 26 0 chr9 123014569 123014744 -1061428 - B3A SINE B2 -5 211 25 2 1523 341 248 45 9 chr9 123014765 123014875 -1061297 - RMER17C LTR ERVK -128 282 169 2 1523 254 277 46 0 chr9 123016724 123016789 -1059383 + B3A SINE B2 18 85 -113 2 1523 369 281 35 9 chr9 123017283 123017398 -1058774 - PB1D9 SINE Alu -1 119 2 2 1523 601 128 64 0 chr9 123017690 123017799 -1058373 + B1_Mur2 SINE Alu 33 148 -1 2 1523 432 0 0 0 chr9 123017881 123017929 -1058243 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1523 270 0 0 0 chr9 123017929 123017958 -1058214 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1523 569 267 47 27 chr9 123017959 123018109 -1058063 - RSINE1 SINE B4 0 165 13 3 1523 361 257 206 47 chr9 123019880 123020076 -1056096 + MIRb SINE MIR 7 242 -26 3 1523 246 200 89 18 chr9 123020522 123020578 -1055594 - ID4 SINE ID -6 77 18 3 1523 256 272 29 140 chr9 123021181 123021352 -1054820 - RLTR25B LTR ERVK -436 592 441 3 1523 770 149 22 36 chr9 123021248 123021387 -1054785 - B1_Mur2 SINE Alu -4 145 9 3 1523 529 249 53 111 chr9 123021251 123021459 -1054713 - ID_B1 SINE B4 -7 217 22 3 1523 241 245 41 0 chr9 123022832 123022881 -1053291 + ID4_ SINE ID 7 57 -26 3 1523 267 237 0 17 chr9 123022870 123022930 -1053242 + B4A SINE B4 88 146 -146 3 1523 463 272 35 8 chr9 123022878 123023019 -1053153 + PB1D10 SINE Alu 10 149 0 3 1523 398 235 0 12 chr9 123023037 123023119 -1053053 - ID4_ SINE ID -1 82 2 3 1523 22 0 0 0 chr9 123023817 123023839 -1052333 + AT_rich Low_complexity Low_complexity 1 22 0 4 1523 544 184 68 0 chr9 123024285 123024388 -1051784 - PB1D9 SINE Alu 0 120 11 4 1523 298 263 0 128 chr9 123024307 123024416 -1051756 - MT2B LTR ERVL -355 246 152 4 1523 381 199 118 17 chr9 123025487 123025642 -1050530 - B3A SINE B2 0 198 1 4 1523 203 105 0 50 chr9 123025664 123025704 -1050468 + GA-rich Low_complexity Low_complexity 3 40 0 4 1523 802 196 70 32 chr9 123025720 123025905 -1050267 + B3A SINE B2 2 193 -5 4 1523 521 268 74 25 chr9 123026065 123026268 -1049904 + B3 SINE B2 1 213 -3 4 1523 911 237 241 56 chr9 123026781 123027388 -1048784 + L1MC4a LINE L1 6371 7089 -793 4 1523 235 286 0 0 chr9 123028491 123028554 -1047618 + ID4_ SINE ID 5 67 -16 4 1523 309 51 0 0 chr9 123029171 123029210 -1046962 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 4 1523 861 194 75 11 chr9 123029210 123029398 -1046774 - B3 SINE B2 -16 200 1 5 1523 376 361 14 64 chr9 123029563 123029782 -1046390 + RMER4A LTR ERVK 6 213 -253 5 1523 313 294 58 12 chr9 123029976 123030062 -1046110 - MER68 LTR ERVL -12 551 462 5 1523 352 231 196 0 chr9 123030095 123030238 -1045934 - MER68 LTR ERVL -272 291 121 5 1523 1205 55 0 0 chr9 123031756 123031902 -1044270 + B1_Mus2 SINE Alu 2 147 0 5 1523 232 211 16 66 chr9 123031903 123031964 -1044208 + ZP3AR Satellite Satellite 38 95 -117 5 1523 248 253 49 25 chr9 123031964 123032045 -1044127 + ID4_ SINE ID 1 83 0 5 1523 587 133 9 0 chr9 123033600 123033705 -1042467 + (TC)n Simple_repeat Simple_repeat 1 106 0 5 1523 252 293 40 0 chr9 123033949 123034024 -1042148 + ID SINE ID 6 83 -141 5 1523 1053 92 35 0 chr9 123034254 123034396 -1041776 + B1_Mus1 SINE Alu 2 148 0 5 1523 22 0 0 0 chr9 123034396 123034418 -1041754 + AT_rich Low_complexity Low_complexity 1 22 0 5 1523 300 183 16 16 chr9 123034454 123034515 -1041657 + MurSatRep1 Unknown Unknown 223 283 -1854 6 1523 439 257 57 124 chr9 123034806 123034835 -1041337 - B2_Mm2 SINE B2 0 195 169 6 1523 1186 68 0 0 chr9 123034835 123034982 -1041190 - B1_Mus2 SINE Alu 0 147 1 6 1523 716 249 19 54 chr9 123034982 123035161 -1041011 - B3 SINE B2 -6 192 1 6 1523 24 0 0 0 chr9 123036427 123036451 -1039721 + AT_rich Low_complexity Low_complexity 1 24 0 6 1523 370 292 71 51 chr9 123038138 123038391 -1037781 - RLTR15 LTR ERVK -26 333 76 6 1523 463 225 7 42 chr9 123038369 123038407 -1037765 - RLTR15 LTR ERVK -218 141 107 6 1523 207 69 0 0 chr9 123038407 123038436 -1037736 + (TCTCTG)n Simple_repeat Simple_repeat 3 31 0 6 1523 463 225 7 42 chr9 123038436 123038541 -1037631 - RLTR15 LTR ERVK -253 106 4 6 1523 285 29 0 0 chr9 123039063 123039097 -1037075 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 6 1523 834 211 7 0 chr9 123039125 123039272 -1036900 - B1_Mur2 SINE Alu -1 148 1 6 1523 422 38 24 48 chr9 123039302 123039385 -1036787 + (TTTG)n Simple_repeat Simple_repeat 1 81 0 6 1523 564 259 14 21 chr9 123039385 123039521 -1036651 - B1F SINE Alu -13 136 1 6 1523 21 0 0 0 chr9 123039528 123039549 -1036623 + AT_rich Low_complexity Low_complexity 1 21 0 7 1523 398 293 19 0 chr9 123040532 123040644 -1035528 + B1F SINE Alu 1 120 -29 7 1523 1183 253 30 4 chr9 123041556 123041826 -1034346 + B4A SINE B4 6 282 -10 7 1523 4159 135 42 40 chr9 123042582 123043336 -1032836 - RMER6A LTR ERVK 0 756 1 7 1523 204 250 0 0 chr9 123043782 123043846 -1032326 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1523 823 278 64 25 chr9 123043862 123044098 -1032074 - B4A SINE B4 0 292 48 7 1523 198 71 0 0 chr9 123044386 123044414 -1031758 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1523 1247 48 0 0 chr9 123045578 123045725 -1030447 - B1_Mus1 SINE Alu -1 147 1 7 1523 595 262 0 34 chr9 123045789 123045935 -1030237 + B1_Mur1 SINE Alu 2 142 -7 7 1523 260 164 97 16 chr9 123046174 123046236 -1029936 - PB1D10 SINE Alu 0 117 51 7 1523 934 114 106 6 chr9 123049103 123049374 -1026798 - RMER2 LTR ERV1 -1 566 214 8 1523 1232 156 158 39 chr9 123049359 123049619 -1026553 - ORR1B2 LTR MaLR -76 291 1 8 1523 995 140 139 156 chr9 123049621 123049759 -1026413 - ORR1B2-int LTR MaLR -17 1492 1371 8 1523 1200 43 0 0 chr9 123049759 123049897 -1026275 - B1_Mus2 SINE Alu -9 138 1 8 1523 995 140 139 156 chr9 123049897 123050046 -1026126 - ORR1B2-int LTR MaLR -139 1370 1210 8 1523 910 221 77 65 chr9 123050072 123050396 -1025776 - RLTR15 LTR ERVK -31 328 1 8 1523 2591 154 12 12 chr9 123050396 123050816 -1025356 - ORR1B2-int LTR MaLR -294 1215 796 8 1523 2439 151 67 13 chr9 123050820 123051694 -1024478 - ORR1A2 LTR MaLR -661 848 1 8 1523 2673 56 65 28 chr9 123051694 123052046 -1024126 + RLTR10B2 LTR ERVK 1 365 0 8 1523 481 76 15 0 chr9 123052046 123052112 -1024060 + MMERVK10C-int LTR ERVK 1 67 -7514 8 1523 744 153 159 191 chr9 123052112 123052245 -1023927 + ORR1B2-int LTR MaLR 1236 1338 -171 8 1523 772 177 287 0 chr9 123052245 123052409 -1023763 - B3 SINE B2 -4 212 2 8 1523 744 153 159 191 chr9 123052409 123052558 -1023614 + ORR1B2-int LTR MaLR 1339 1509 0 8 1523 1734 147 84 31 chr9 123052558 123052866 -1023306 + ORR1B2 LTR MaLR 1 325 -42 8 1523 1440 266 113 11 chr9 123052866 123053210 -1022962 - RMER20A LTR ERVK 0 516 133 8 1523 252 0 0 0 chr9 123053210 123053238 -1022934 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1523 1440 266 113 11 chr9 123053238 123053352 -1022820 - RMER20A LTR ERVK -384 132 12 8 1523 503 125 0 0 chr9 123053355 123053427 -1022745 + ORR1C2 LTR MaLR 299 370 -14 9 1523 1283 108 10 24 chr9 123053412 123053620 -1022552 + ORR1C2-int LTR MaLR 5 209 -1300 9 1523 993 61 8 0 chr9 123053620 123053751 -1022421 - RLTR10B2 LTR ERVK 0 365 234 9 1523 5464 132 53 22 chr9 123053751 123054695 -1021477 - ETnERV2-int LTR ERVK -5545 1708 175 9 1523 1136 127 16 16 chr9 123054881 123055065 -1021107 - ETnERV3-int LTR ERVK -5622 186 3 9 1523 6370 53 19 38 chr9 123055067 123055905 -1020267 - RLTR13B2 LTR ERVK 0 822 1 9 1523 595 167 0 0 chr9 123055909 123055999 -1020173 - ORR1B2 LTR MaLR -275 92 3 9 1523 633 259 104 6 chr9 123056077 123056240 -1019932 + B3A SINE B2 20 198 0 9 1523 361 343 56 21 chr9 123056252 123056395 -1019777 - RSINE1 SINE B4 -2 163 16 9 1523 481 245 39 0 chr9 123056431 123056533 -1019639 - PB1D7 SINE Alu -6 114 9 9 1523 216 276 52 0 chr9 123056482 123056540 -1019632 - B4A SINE B4 -148 144 84 9 1523 363 274 7 182 chr9 123057923 123058066 -1018106 - ID_B1 SINE B4 -67 157 40 9 1523 891 158 7 46 chr9 123058073 123058226 -1017946 - B1_Mus2 SINE Alu 0 147 1 1 1523 332 164 0 76 chr9 123058226 123058292 -1017880 - ID4 SINE ID -21 62 2 1 1523 191 225 92 66 chr9 123058892 123058968 -1017204 + L4 LINE RTE 1165 1242 -787 1 1523 708 261 45 35 chr9 123061079 123061278 -1014894 + ID_B1 SINE B4 24 224 0 1 1523 682 176 87 14 chr9 123061417 123061555 -1014617 + B1_Mur1 SINE Alu 2 149 0 1 1523 201 74 0 0 chr9 123061851 123061878 -1014294 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 1523 1125 75 14 0 chr9 123061892 123062038 -1014134 - B1_Mus1 SINE Alu 0 148 1 1 1523 441 0 0 0 chr9 123062632 123062681 -1013491 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1523 441 0 0 0 chr9 123062681 123062729 -1013443 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1523 234 236 80 93 chr9 123062838 123062959 -1013213 + MIR SINE MIR 88 212 -56 1 1523 742 233 39 78 chr9 123064070 123064257 -1011915 + B3A SINE B2 1 185 -13 1 1523 396 0 0 0 chr9 123064257 123064301 -1011871 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1523 742 233 39 78 chr9 123064301 123064318 -1011854 + B3A SINE B2 186 197 -1 1 1523 883 183 14 0 chr9 123064318 123064460 -1011712 + B1_Mur1 SINE Alu 6 149 0 1 1523 29 38 0 19 chr9 123064462 123064498 -1011674 + AT_rich Low_complexity Low_complexity 1 36 0 1 1523 762 251 61 42 chr9 123064498 123064710 -1011462 + B3 SINE B2 1 216 0 1 1523 29 38 0 19 chr9 123064710 123064727 -1011445 + AT_rich Low_complexity Low_complexity 1 17 0 1 1523 1549 57 5 0 chr9 123066554 123066746 -1009426 + B2_Mm1a SINE B2 1 193 0 1 1523 552 126 0 0 chr9 123067847 123067934 -1008238 + (TTCC)n Simple_repeat Simple_repeat 3 89 0 1 1523 282 309 0 0 chr9 123068284 123068352 -1007820 + ID4_ SINE ID 4 71 -12 1 1523 360 0 0 0 chr9 123068368 123068408 -1007764 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 1 1523 876 185 162 0 chr9 123068962 123069135 -1007037 + B3 SINE B2 2 202 -14 1 1523 213 39 0 0 chr9 123069135 123069161 -1007011 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1523 252 297 78 10 chr9 123069313 123069415 -1006757 + MIRc SINE MIR 26 134 -134 1 1523 558 302 62 24 chr9 123070542 123070752 -1005420 - MER20 DNA MER1_type -1 218 1 1 1523 672 118 9 47 chr9 123070884 123070991 -1005181 + B1_Mur4 SINE Alu 47 149 -1 1 1523 711 169 66 7 chr9 123071025 123071162 -1005010 + B1_Mus2 SINE Alu 1 145 -2 1 1523 203 61 30 0 chr9 123071163 123071196 -1004976 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1 1523 250 340 10 21 chr9 123071224 123071320 -1004852 + PB1D10 SINE Alu 22 116 -1 1 1523 225 297 32 21 chr9 123071368 123071461 -1004711 + LTR16B LTR ERVL 363 456 -7 1 1523 1665 161 106 9 chr9 123071731 123072070 -1004102 + RMER1B Other Other 44 415 -651 1 1523 1009 229 153 25 chr9 123072040 123072544 -1003628 + RMER1A Other Other 1 421 -609 1 1523 1358 176 126 20 chr9 123072546 123072848 -1003324 + ORR1C1 LTR MaLR 44 377 -1 1 1523 291 270 14 0 chr9 123072935 123073009 -1003163 + ID4_ SINE ID 5 79 -4 1 1523 1024 119 21 0 chr9 123073896 123074039 -1002133 - B1_Mur4 SINE Alu -1 149 4 1 1523 462 229 96 117 chr9 123074134 123074322 -1001850 - B3A SINE B2 -14 184 1 1 1523 243 170 0 0 chr9 123074323 123074370 -1001802 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1523 245 304 0 0 chr9 123074374 123074430 -1001742 - ID4_ SINE ID -13 70 15 1 1523 327 247 59 40 chr9 123074434 123074535 -1001637 - PB1 SINE Alu -24 103 1 1 1523 493 272 5 0 chr9 123074564 123074686 -1001486 - PB1D7 SINE Alu -21 128 5 1 1523 410 252 9 37 chr9 123074772 123074879 -1001293 - PB1D10 SINE Alu -1 116 13 1 1523 274 302 75 9 chr9 123074793 123074900 -1001272 - ID_B1 SINE B4 -45 179 66 1 1523 285 317 111 37 chr9 123075474 123075582 -1000590 - PB1D10 SINE Alu -1 116 1 1 1523 235 208 37 19 chr9 123075630 123075684 -1000488 - MLT2B4 LTR ERVL -498 58 4 1 1524 180 238 94 16 chr9 123076731 123076795 -999377 + MIRc SINE MIR 177 245 -23 1 1524 300 143 0 0 chr9 123077060 123077116 -999056 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1524 505 132 31 56 chr9 123077142 123077302 -998870 + (CA)n Simple_repeat Simple_repeat 2 157 0 1 1524 200 189 27 0 chr9 123077319 123077356 -998816 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1524 225 0 0 0 chr9 123077403 123077428 -998744 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1524 180 0 0 0 chr9 123077428 123077447 -998725 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1524 352 289 34 26 chr9 123077530 123077647 -998525 - MLT1A1 LTR MaLR 0 408 291 1 1524 377 192 389 0 chr9 123077695 123077743 -998429 - B4A SINE B4 -8 284 86 1 1524 363 211 168 0 chr9 123077743 123077838 -998334 - PB1D10 SINE Alu -6 111 1 1 1524 374 247 17 2 chr9 123077869 123077960 -998212 + B4A SINE B4 1 93 -199 1 1524 610 182 82 6 chr9 123077963 123078118 -998054 + B3A SINE B2 3 191 -2 1 1524 2413 119 50 20 chr9 123078164 123078807 -997365 - RMER6A LTR ERVK 0 756 1 1 1524 340 277 14 4 chr9 123078811 123078896 -997276 + B4A SINE B4 141 224 -68 1 1524 3162 34 45 0 chr9 123079295 123079674 -996498 + MTA_Mm LTR MaLR 1 396 0 1 1524 288 313 72 58 chr9 123080964 123081103 -995069 + MLT1D LTR MaLR 1 141 -364 1 1524 468 256 103 0 chr9 123081174 123081291 -994881 + MLT1D LTR MaLR 302 430 -75 1 1524 810 172 0 110 chr9 123081413 123081576 -994596 - B1_Mur4 SINE Alu 0 150 6 1 1524 504 311 0 47 chr9 123081434 123081603 -994569 - ID_B1 SINE B4 -3 221 61 1 1524 367 260 39 140 chr9 123081457 123081636 -994536 - MT2B LTR ERVL -322 279 119 1 1524 629 258 163 0 chr9 123081945 123082123 -994049 - ID_B1 SINE B4 -17 207 1 1 1524 363 23 0 0 chr9 123082163 123082207 -993965 + (CTA)n Simple_repeat Simple_repeat 1 44 0 1 1524 340 264 23 0 chr9 123084501 123084588 -991584 + (CGTG)n Simple_repeat Simple_repeat 2 90 0 1 1524 384 77 0 0 chr9 123084741 123084793 -991379 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 1 1524 1099 131 140 10 chr9 123085333 123085533 -990639 - URR1A DNA MER1_type 0 226 1 1 1524 797 150 0 7 chr9 123085916 123086064 -990108 + CT-rich Low_complexity Low_complexity 1 147 0 1 1524 1358 88 22 0 chr9 123086079 123086261 -989911 - B2_Mm2 SINE B2 -9 186 1 1 1524 227 302 11 95 chr9 123086551 123086646 -989526 + MLT1H LTR MaLR 349 435 -114 1 1524 495 188 21 10 chr9 123087262 123087359 -988813 + MER3 DNA MER1_type 1 98 -111 1 1524 461 231 74 0 chr9 123088916 123089024 -987148 + MTEa LTR MaLR 264 379 0 1 1524 655 200 40 8 chr9 123089873 123089999 -986173 - B1_Mur2 SINE Alu -5 144 15 1 1524 414 0 0 0 chr9 123090019 123090065 -986107 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 1524 825 249 61 0 chr9 123090066 123090263 -985909 - ID_B1 SINE B4 -13 211 3 1 1524 243 259 20 149 chr9 123090328 123090449 -985723 - ID4_ SINE ID -47 105 1 1 1524 746 281 0 19 chr9 123091012 123091168 -985004 + RSINE1 SINE B4 8 160 -5 1 1524 648 117 49 6 chr9 123091655 123091819 -984353 + (CA)n Simple_repeat Simple_repeat 1 171 0 1 1524 225 178 22 0 chr9 123092011 123092056 -984116 + (TGG)n Simple_repeat Simple_repeat 2 47 0 1 1524 471 264 45 0 chr9 123092194 123092304 -983868 + B3A SINE B2 1 115 -83 1 1524 339 25 0 0 chr9 123092316 123092356 -983816 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1524 339 261 196 52 chr9 123093100 123093395 -982777 - MER63B DNA AcHobo -1 435 97 1 1524 598 157 53 83 chr9 123093619 123093751 -982421 - B1_Mur4 SINE Alu -19 131 4 1 1524 710 250 7 0 chr9 123093798 123093938 -982234 + ID_B1 SINE B4 81 221 -3 1 1524 608 195 71 0 chr9 123093948 123094061 -982111 + B1_Mus1 SINE Alu 6 126 -22 1 1524 1425 242 73 8 chr9 123094953 123095307 -980865 + MTEb LTR MaLR 1 377 -2 1 1524 328 356 93 70 chr9 123095860 123095933 -980239 + B4A SINE B4 22 97 -195 1 1524 810 109 83 30 chr9 123095933 123096066 -980106 + B1_Mus1 SINE Alu 3 142 -6 1 1524 328 356 93 70 chr9 123096066 123096249 -979923 + B4A SINE B4 98 284 -8 1 1524 348 24 0 0 chr9 123096286 123096327 -979845 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1524 950 62 94 0 chr9 123096330 123096458 -979714 - B1_Mus1 SINE Alu -7 141 2 1 1524 518 300 163 22 chr9 123096466 123096650 -979522 + B4A SINE B4 65 274 -18 1 1524 414 0 0 0 chr9 123096673 123096719 -979453 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1524 616 261 7 53 chr9 123097032 123097047 -979125 - RSINE1 SINE B4 -19 146 133 1 1524 444 37 0 0 chr9 123097047 123097101 -979071 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1524 616 261 7 53 chr9 123097101 123097235 -978937 - RSINE1 SINE B4 -33 132 4 1 1524 376 320 39 10 chr9 123098041 123098145 -978027 + MLT1A1 LTR MaLR 3 109 -256 1 1524 522 196 18 18 chr9 123098193 123098302 -977870 + MLT1A1 LTR MaLR 288 396 -12 1 1524 695 234 21 0 chr9 123098447 123098588 -977584 + B1_Mur2 SINE Alu 1 144 -5 1 1524 1420 83 0 30 chr9 123098602 123098801 -977371 + B2_Mm2 SINE B2 3 195 0 1 1524 228 333 17 0 chr9 123099703 123099763 -976409 + PB1 SINE Alu 3 63 -64 1 1524 518 269 33 40 chr9 123099761 123099912 -976260 + MTEb LTR MaLR 228 377 -2 1 1524 1977 159 8 8 chr9 123099957 123100313 -975859 - IAPLTR1_Mm LTR ERVK -11 356 1 1 1524 54410 19 4 30 chr9 123100313 123106960 -969212 - IAPEz-int LTR ERVK 0 6481 9 1 1524 1987 166 8 8 chr9 123106960 123107325 -968847 - IAPLTR1_Mm LTR ERVK -2 365 1 1 1524 375 23 0 0 chr9 123107723 123107767 -968405 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1524 451 280 6 106 chr9 123108630 123108790 -967382 + ID_B1 SINE B4 55 198 -26 1 1524 643 187 9 9 chr9 123108690 123108798 -967374 + B1F2 SINE Alu 21 128 -21 1 1524 303 275 20 103 chr9 123108709 123108802 -967370 + RLTR25B LTR ERVK 441 529 -499 1 1524 246 62 0 0 chr9 123108802 123108834 -967338 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1 1524 303 275 20 103 chr9 123108834 123108886 -967286 + RLTR25B LTR ERVK 530 573 -455 1 1524 726 225 24 86 chr9 123108954 123109163 -967009 - B3 SINE B2 -20 196 1 2 1524 372 281 113 9 chr9 123109436 123109551 -966621 + ORR1E LTR MaLR 1 127 -232 2 1524 426 39 0 0 chr9 123111342 123111394 -964778 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1524 319 345 35 21 chr9 123112277 123112422 -963750 - MIR SINE MIR -88 174 28 2 1524 867 20 0 0 chr9 123112614 123112715 -963457 + (TTC)n Simple_repeat Simple_repeat 1 101 0 2 1524 24 53 0 0 chr9 123113629 123113667 -962505 + AT_rich Low_complexity Low_complexity 1 38 0 2 1524 501 62 0 0 chr9 123113667 123113732 -962440 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1524 668 248 44 13 chr9 123113736 123113895 -962277 - B3A SINE B2 -27 171 8 2 1524 1226 54 0 0 chr9 123113993 123114140 -962032 - B1_Mus1 SINE Alu 0 148 2 2 1524 635 170 0 0 chr9 123114173 123114273 -961899 - B1_Mur1 SINE Alu -7 142 43 2 1524 23 0 0 0 chr9 123114395 123114418 -961754 + AT_rich Low_complexity Low_complexity 1 23 0 2 1524 391 250 107 82 chr9 123114427 123114549 -961623 + ID_B1 SINE B4 82 206 -18 2 1524 282 159 0 0 chr9 123114576 123114620 -961552 + L1ME1 LINE L1 5938 5981 -198 2 1524 831 225 12 9 chr9 123115293 123115449 -960723 + ID_B1 SINE B4 71 222 -70 2 1524 320 231 0 17 chr9 123115501 123115577 -960595 - ID2 SINE ID -78 74 1 2 1524 248 290 16 0 chr9 123116315 123116377 -959795 - MIRb SINE MIR -151 117 55 2 1524 666 297 164 8 chr9 123116514 123116752 -959420 + RMER15 LTR ERVL 276 550 -25 2 1524 1501 217 0 44 chr9 123117564 123117623 -958549 + B4 SINE B4 28 85 -207 2 1524 453 36 0 0 chr9 123117623 123117678 -958494 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 2 1524 1501 217 0 44 chr9 123117678 123117893 -958279 + B4 SINE B4 86 290 -2 2 1524 520 273 80 61 chr9 123118398 123118547 -957625 + ORR1D2 LTR MaLR 4 168 -202 2 1524 414 39 0 0 chr9 123118547 123118599 -957573 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1524 520 245 55 55 chr9 123118599 123118684 -957488 + ORR1D2 LTR MaLR 169 258 -112 2 1524 216 0 0 0 chr9 123119335 123119359 -956813 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1524 288 324 54 0 chr9 123119483 123119557 -956615 + ID_B1 SINE B4 67 144 -80 2 1524 497 193 234 40 chr9 123119823 123119947 -956225 + B1_Mur4 SINE Alu 3 150 0 2 1524 23 0 0 0 chr9 123119954 123119977 -956195 + AT_rich Low_complexity Low_complexity 1 23 0 2 1524 638 8 99 0 chr9 123119990 123120121 -956051 + (GA)n Simple_repeat Simple_repeat 1 144 0 2 1524 248 229 10 40 chr9 123120268 123120343 -955829 + MIR SINE MIR 77 160 -116 2 1524 2516 76 3 3 chr9 123120850 123121179 -954993 - MTB LTR MaLR 0 400 72 2 1524 228 231 0 0 chr9 123121678 123121730 -954442 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1524 424 243 75 44 chr9 123121731 123121890 -954282 - RSINE1 SINE B4 -1 164 1 2 1524 582 282 135 0 chr9 123121959 123122129 -954043 - ID_B1 SINE B4 -25 199 7 2 1524 923 239 60 116 chr9 123122929 123123326 -952846 + RMER5 LTR ERV1 34 408 -126 2 1524 904 262 14 5 chr9 123123604 123123819 -952353 - ID_B1 SINE B4 -7 217 1 2 1524 261 286 93 45 chr9 123123850 123123984 -952188 + PB1D7 SINE Alu 9 149 0 2 1524 1331 161 9 5 chr9 123125928 123126152 -950020 - URR1B DNA MER1_type 0 225 1 2 1524 693 204 42 7 chr9 123126659 123126802 -949370 - B1_Mur1 SINE Alu 0 149 2 2 1524 820 203 0 7 chr9 123126852 123126996 -949176 + B1_Mus2 SINE Alu 2 144 -3 2 1524 351 0 0 0 chr9 123126996 123127035 -949137 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1524 4400 117 17 15 chr9 123127275 123127928 -948244 + RLTR33 LTR ERVK 3 656 -22 2 1524 504 244 66 73 chr9 123128386 123128523 -947649 + RSINE1 SINE B4 2 137 -28 2 1524 222 254 196 72 chr9 123128523 123128539 -947633 + B2_Mm2 SINE B2 1 172 -23 2 1524 21 0 0 0 chr9 123128547 123128568 -947604 + AT_rich Low_complexity Low_complexity 1 21 0 2 1524 316 197 56 0 chr9 123128594 123128665 -947507 + PB1D10 SINE Alu 42 116 -1 2 1524 344 248 51 70 chr9 123128792 123128948 -947224 + HAL1 LINE L1 123 275 -2232 2 1524 188 0 74 0 chr9 123128948 123128975 -947197 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1524 303 347 139 27 chr9 123129312 123129570 -946602 + HAL1 LINE L1 765 1051 -1456 2 1524 734 213 14 0 chr9 123129597 123129738 -946434 - B1_Mus1 SINE Alu 0 148 6 2 1524 248 186 0 0 chr9 123129851 123129894 -946278 + tRNA-Ala-GCY_ tRNA tRNA 5 47 -28 2 1524 291 298 81 0 chr9 123130006 123130130 -946042 + HAL1 LINE L1 1321 1454 -1053 2 1524 243 122 0 0 chr9 123130138 123130187 -945985 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1524 285 283 214 22 chr9 123130189 123130413 -945759 + HAL1 LINE L1 1457 1723 -784 2 1524 618 296 6 18 chr9 123130422 123130587 -945585 + RSINE1 SINE B4 3 165 0 2 1524 234 0 0 0 chr9 123130616 123130642 -945530 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1524 488 279 36 26 chr9 123130664 123130859 -945313 - Arthur1 DNA Tip100 -30 3917 3721 2 1524 3595 25 0 0 chr9 123130889 123131285 -944887 + MTA_Mm LTR MaLR 1 396 0 2 1524 376 333 124 0 chr9 123131304 123131409 -944763 - RSINE1 SINE B4 -4 161 44 2 1524 611 162 29 0 chr9 123131445 123131550 -944622 - B1_Mur3 SINE Alu 0 149 42 2 1524 703 346 74 34 chr9 123131560 123131913 -944259 - Arthur1 DNA Tip100 -3393 554 188 2 1524 450 0 0 0 chr9 123131918 123131968 -944204 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1524 217 197 33 0 chr9 123132042 123132103 -944069 + CT-rich Low_complexity Low_complexity 1 63 0 2 1524 785 218 134 40 chr9 123132111 123132312 -943860 - B4 SINE B4 -63 229 10 2 1524 696 255 102 16 chr9 123132345 123132532 -943640 - B3 SINE B2 -2 214 12 2 1524 210 37 0 0 chr9 123132538 123132565 -943607 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2 1524 1135 72 0 0 chr9 123132571 123132709 -943463 + B1_Mus2 SINE Alu 1 138 -9 2 1524 270 21 42 21 chr9 123132709 123132757 -943415 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1524 308 227 141 43 chr9 123132977 123133069 -943103 - B1_Mus1 SINE Alu -41 107 7 2 1524 204 234 121 72 chr9 123133123 123133206 -942966 + L2c LINE L2 3281 3367 -20 2 1524 655 234 13 54 chr9 123133325 123133474 -942698 + B3A SINE B2 1 143 -55 2 1524 288 0 0 0 chr9 123133540 123133572 -942600 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1524 288 0 0 0 chr9 123135474 123135506 -940666 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1524 2611 148 92 4 chr9 123135704 123136185 -939987 + RLTR24 LTR ERV1 5 527 -2 2 1524 207 0 0 0 chr9 123136235 123136258 -939914 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1524 1059 195 0 46 chr9 123137398 123137635 -938537 + RMER10B LTR ERVL 39 264 -134 2 1524 1012 128 92 46 chr9 123137615 123137811 -938361 + RMER10B LTR ERVL 194 398 0 2 1524 342 45 0 0 chr9 123138118 123138162 -938010 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1524 207 0 0 0 chr9 123138551 123138574 -937598 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1524 1259 48 0 0 chr9 123138574 123138721 -937451 - B1_Mus1 SINE Alu 0 148 2 2 1524 192 125 0 0 chr9 123139035 123139067 -937105 + (CCCCCA)n Simple_repeat Simple_repeat 5 36 0 2 1524 565 174 43 9 chr9 123139399 123139502 -936670 - RCHARR1 DNA MER1_type -509 465 359 2 1524 1107 44 73 0 chr9 123139502 123139639 -936533 + B1_Mus2 SINE Alu 1 147 0 2 1524 565 174 43 9 chr9 123139639 123139651 -936521 - RCHARR1 DNA MER1_type -616 358 347 2 1524 225 0 0 0 chr9 123139651 123139676 -936496 + (CAAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1524 181 0 33 33 chr9 123139718 123139748 -936424 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 1524 631 321 55 118 chr9 123139748 123140147 -936025 - RCHARR1 DNA MER1_type -600 374 1 2 1524 297 216 0 0 chr9 123140279 123140330 -935842 + B1_Mus2 SINE Alu 1 51 -96 2 1524 725 83 3 1 chr9 123140331 123140444 -935728 + B1_Mus1 SINE Alu 2 115 -5 2 1524 428 229 177 7 chr9 123140444 123140464 -935708 + B4 SINE B4 119 243 -49 2 1524 598 159 18 27 chr9 123140460 123140570 -935602 + B1_Mur3 SINE Alu 41 149 0 2 1524 904 166 229 0 chr9 123141061 123141236 -934936 + B3 SINE B2 2 216 0 2 1524 246 62 0 0 chr9 123141423 123141455 -934717 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1524 265 306 20 10 chr9 123141522 123141621 -934551 + GA-rich Low_complexity Low_complexity 2 101 0 2 1524 929 203 78 10 chr9 123141815 123142019 -934153 + ID_B1 SINE B4 5 222 -2 2 1524 216 295 192 0 chr9 123142296 123142374 -933798 - B1_Mm SINE Alu -52 95 3 2 1524 1083 58 0 0 chr9 123142378 123142517 -933655 + (TTTC)n Simple_repeat Simple_repeat 3 141 0 2 1524 391 272 65 0 chr9 123142522 123142614 -933558 - B1F1 SINE Alu -9 140 43 2 1524 324 70 0 0 chr9 123142691 123142734 -933438 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2 1524 1148 97 0 0 chr9 123142736 123142890 -933282 - B2_Mm2 SINE B2 -41 154 1 2 1524 910 259 32 148 chr9 123142966 123143024 -933148 - MTE2b LTR MaLR -20 359 319 2 1524 514 170 374 0 chr9 123143024 123143171 -933001 + B3 SINE B2 2 203 -13 2 1524 1027 257 26 32 chr9 123143171 123143453 -932719 - MTE2b LTR MaLR -54 325 58 2 1524 350 291 0 0 chr9 123143451 123143530 -932642 - MTE2b LTR MaLR -279 100 22 2 1524 185 265 87 14 chr9 123143899 123143968 -932204 + MIR3 SINE MIR 95 168 -40 2 1524 1659 16 21 0 chr9 123144058 123144244 -931928 - B2_Mm1a SINE B2 -2 191 2 2 1524 235 285 86 68 chr9 123144271 123144433 -931739 - MLT2B5 LTR ERVL -246 355 191 2 1524 627 266 16 0 chr9 123144473 123144597 -931575 - RSINE1 SINE B4 -37 128 3 2 1524 207 0 0 0 chr9 123146090 123146113 -930059 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1524 232 325 116 23 chr9 123146211 123146340 -929832 - MER53 DNA hAT -51 142 2 2 1524 243 0 0 0 chr9 123147221 123147248 -928924 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 2 1524 292 22 0 43 chr9 123147415 123147462 -928710 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 1524 558 114 0 0 chr9 123148277 123148365 -927807 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 1524 480 18 0 0 chr9 123148556 123148613 -927559 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1524 376 135 0 18 chr9 123148620 123148691 -927481 - L1MA5 LINE L1 -368 5932 5864 3 1524 216 0 0 0 chr9 123148935 123148959 -927213 + (CAGC)n Simple_repeat Simple_repeat 3 26 0 3 1524 560 274 7 22 chr9 123149143 123149281 -926891 + ID_B1 SINE B4 81 216 -8 3 1524 241 302 20 20 chr9 123149334 123149432 -926740 - MER94 DNA AcHobo -9 125 28 3 1524 351 0 0 0 chr9 123149581 123149620 -926552 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1524 436 227 204 7 chr9 123149621 123149763 -926409 - B3A SINE B2 -27 171 2 3 1524 269 267 159 29 chr9 123149763 123149933 -926239 + MamRep1161 DNA TcMar 421 612 -345 3 1524 1263 81 11 17 chr9 123150644 123150819 -925353 - B2_Mm2 SINE B2 -19 176 3 3 1524 857 254 64 41 chr9 123151018 123151151 -925021 - ID_B1 SINE B4 -1 223 98 3 1524 1985 142 276 33 chr9 123151151 123151611 -924561 + RMER15 LTR ERVL 4 575 0 3 1524 857 254 64 41 chr9 123151611 123151695 -924477 - ID_B1 SINE B4 -127 97 1 3 1524 599 182 45 10 chr9 123151736 123151870 -924302 - B1_Mur2 SINE Alu -9 139 2 3 1524 245 279 17 126 chr9 123151772 123151878 -924294 - MT2B LTR ERVL -344 257 163 3 1524 486 205 0 86 chr9 123151878 123152006 -924166 - PB1D10 SINE Alu 0 117 1 3 1524 245 279 17 126 chr9 123152006 123152018 -924154 - MT2B LTR ERVL -439 162 152 3 1524 572 291 0 21 chr9 123152039 123152183 -923989 - ID_B1 SINE B4 0 224 84 3 1524 396 0 0 0 chr9 123153920 123153964 -922208 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1524 373 289 109 0 chr9 123154022 123154058 -922114 + B1F SINE Alu 1 142 -7 3 1524 526 185 11 0 chr9 123154058 123154150 -922022 + ID_B1 SINE B4 125 217 -7 3 1524 353 337 57 62 chr9 123155010 123155219 -920953 - LTR86B1 LTR ERVL -247 246 39 3 1524 333 333 120 62 chr9 123155563 123155771 -920401 + LTR81B LTR ERV1? 160 379 -971 3 1524 248 348 56 103 chr9 123156132 123156225 -919947 + MamGypLTR2c LTR Gypsy 677 886 -182 3 1524 257 296 107 96 chr9 123156225 123156412 -919760 + LTR81B LTR ERV1? 824 1012 -141 3 1524 248 348 56 103 chr9 123156412 123156452 -919720 + MamGypLTR2c LTR Gypsy 887 981 -87 3 1524 861 146 7 0 chr9 123156648 123156785 -919387 + B1_Mur4 SINE Alu 11 148 -2 3 1524 814 61 20 9 chr9 123157376 123157501 -918671 + B1_Mus1 SINE Alu 22 147 -1 3 1524 792 103 0 0 chr9 123157504 123157620 -918552 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 3 1524 634 138 8 8 chr9 123157737 123157861 -918311 + CT-rich Low_complexity Low_complexity 3 126 0 3 1524 525 287 64 50 chr9 123157861 123158081 -918091 - ID_B1 SINE B4 0 224 2 3 1524 1227 104 15 40 chr9 123158787 123158987 -917185 - B2_Mm2 SINE B2 0 195 1 3 1524 600 216 41 56 chr9 123159035 123159231 -916941 + L1M2 LINE L1 2571 2763 -3380 3 1524 237 289 0 13 chr9 123159309 123159386 -916786 - Lx8 LINE L1 -5 7468 7393 3 1524 1600 265 108 11 chr9 123159466 123160168 -916004 + L1M2 LINE L1 2785 3554 -2589 3 1524 1245 96 0 0 chr9 123160169 123160347 -915825 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 1524 423 294 59 0 chr9 123160356 123160475 -915697 - RSINE1 SINE B4 -36 129 4 3 1524 274 335 45 11 chr9 123160475 123160653 -915519 + L1M2 LINE L1 3548 3731 -2412 3 1524 25 31 0 0 chr9 123160653 123160685 -915487 + AT_rich Low_complexity Low_complexity 1 32 0 3 1524 583 240 45 23 chr9 123160687 123160819 -915353 - RSINE1 SINE B4 -29 136 2 3 1524 315 194 15 15 chr9 123160888 123160956 -915216 - ID2 SINE ID -13 70 3 3 1524 894 234 70 4 chr9 123160963 123161233 -914939 + L1M2 LINE L1 3728 4015 -2128 3 1524 363 280 74 42 chr9 123161315 123161505 -914667 + L1_Mur3 LINE L1 4210 4405 -1475 3 1524 267 103 0 0 chr9 123161776 123161815 -914357 + (GGAGA)n Simple_repeat Simple_repeat 1 39 0 3 1524 195 100 0 0 chr9 123161826 123161856 -914316 + (CAGAGA)n Simple_repeat Simple_repeat 5 34 0 3 1524 221 236 96 14 chr9 123162664 123162737 -913435 - B2_Mm2 SINE B2 -115 80 2 3 1524 230 325 124 58 chr9 123163494 123163615 -912557 + LTR16A1 LTR ERVL 199 327 -129 3 1524 207 0 0 0 chr9 123164139 123164162 -912010 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1524 1014 93 0 0 chr9 123164162 123164301 -911871 - B1_Mus1 SINE Alu -8 140 2 3 1524 533 320 119 40 chr9 123164301 123164604 -911568 + ORR1E LTR MaLR 33 359 0 3 1524 724 174 24 16 chr9 123164738 123164861 -911311 - B1_Mur2 SINE Alu -24 125 2 3 1524 469 213 14 99 chr9 123164861 123164899 -911273 - MT2B LTR ERVL -447 154 129 3 1524 340 191 73 0 chr9 123165172 123165240 -910932 + MTEa LTR MaLR 303 375 -4 3 1524 291 287 67 38 chr9 123165267 123165372 -910800 - LTR16A LTR ERVL -6 445 338 3 1524 432 0 0 0 chr9 123165814 123165862 -910310 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1524 809 251 80 5 chr9 123165911 123166111 -910061 - B3 SINE B2 -1 215 1 3 1524 408 257 187 19 chr9 123166135 123166242 -909930 - B3A SINE B2 -68 125 1 3 1524 324 316 34 26 chr9 123166484 123166601 -909571 + MIRm SINE MIR 17 134 -142 3 1524 189 139 194 0 chr9 123167117 123167153 -909019 - MER5A DNA MER1_type -143 46 4 3 1524 322 241 132 0 chr9 123167218 123167301 -908871 - PB1D10 SINE Alu -1 116 23 3 1524 979 256 91 0 chr9 123167560 123167814 -908358 + B4A SINE B4 2 278 -14 3 1524 273 167 0 0 chr9 123168828 123168882 -907290 + (CAG)n Simple_repeat Simple_repeat 1 54 0 3 1524 22 0 0 0 chr9 123168905 123168927 -907245 + GC_rich Low_complexity Low_complexity 1 22 0 3 1524 237 72 35 35 chr9 123170289 123170347 -905825 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 3 1524 324 264 113 0 chr9 123170594 123170700 -905472 + PB1D9 SINE Alu 3 120 0 3 1524 337 233 58 0 chr9 123170697 123170783 -905389 + PB1D10 SINE Alu 27 117 0 3 1524 294 222 69 39 chr9 123170797 123170909 -905263 + ID_B1 SINE B4 7 130 -35 3 1524 781 221 0 0 chr9 123171109 123171249 -904923 - B1_Mur2 SINE Alu -5 144 5 3 1524 184 172 17 17 chr9 123171289 123171348 -904824 + GA-rich Low_complexity Low_complexity 1 59 0 3 1524 441 0 0 0 chr9 123171594 123171643 -904529 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 3 1524 228 67 0 0 chr9 123171925 123171955 -904217 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 3 1524 462 241 121 0 chr9 123171994 123172110 -904062 + ID_B1 SINE B4 88 217 -7 3 1524 256 211 39 0 chr9 123172390 123172442 -903730 - PB1D10 SINE Alu -63 54 1 3 1524 252 378 93 24 chr9 123172610 123172900 -903272 + L2a LINE L2 2948 3247 -128 3 1524 912 260 31 34 chr9 123172981 123173272 -902900 + B4A SINE B4 1 290 -2 3 1524 745 87 0 17 chr9 123173301 123173418 -902754 + (GGA)n Simple_repeat Simple_repeat 2 116 0 3 1524 666 161 127 0 chr9 123173545 123173663 -902509 + B1_Mur4 SINE Alu 2 134 -16 3 1524 407 289 0 0 chr9 123175469 123175566 -900606 + MTEa LTR MaLR 1 97 -282 3 1524 720 296 17 17 chr9 123175640 123175870 -900302 + MT2A LTR ERVL 233 462 -71 3 1524 432 0 0 0 chr9 123175875 123175923 -900249 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1524 186 248 224 26 chr9 123176935 123177051 -899121 + MIRb SINE MIR 60 198 -70 3 1524 259 323 20 59 chr9 123177203 123177275 -898897 + PB1D10 SINE Alu 1 74 -43 3 1524 2197 101 65 0 chr9 123177275 123177582 -898590 + ORR1A2 LTR MaLR 1 327 0 3 1524 259 323 20 59 chr9 123177582 123177611 -898561 + PB1D10 SINE Alu 75 98 -19 3 1524 1188 75 0 0 chr9 123177780 123177927 -898245 - B1_Mus2 SINE Alu 0 147 1 3 1524 235 308 0 15 chr9 123177927 123177993 -898179 - MIR3 SINE MIR -53 155 91 3 1524 784 136 13 7 chr9 123178515 123178553 -897619 + polypurine Low_complexity Low_complexity 2 39 0 3 1524 1427 72 10 25 chr9 123178553 123178751 -897421 + B2_Mm2 SINE B2 1 195 0 3 1524 784 136 13 7 chr9 123178751 123178867 -897305 + polypurine Low_complexity Low_complexity 40 156 0 3 1524 333 213 0 96 chr9 123179617 123179700 -896472 - ID4_ SINE ID -6 77 3 3 1524 526 257 126 44 chr9 123179778 123179961 -896211 - B3A SINE B2 0 198 1 3 1524 1492 108 4 13 chr9 123180113 123180338 -895834 - Lx2 LINE L1 0 6997 6775 3 1524 4707 99 39 3 chr9 123180338 123181026 -895146 - Lx2 LINE L1 -354 6643 5931 3 1524 310 167 13 132 chr9 123182003 123182079 -894093 - MER5A DNA MER1_type -122 67 1 3 1524 521 284 114 46 chr9 123183030 123183311 -892861 - ORR1E LTR MaLR -9 350 51 3 1524 523 295 55 55 chr9 123183359 123183838 -892334 + RLTR15 LTR ERVK 1 348 -11 3 1524 192 77 0 0 chr9 123183898 123183924 -892248 + (TGG)n Simple_repeat Simple_repeat 2 27 0 3 1524 1114 221 138 0 chr9 123184188 123184428 -891744 - B4A SINE B4 -11 281 9 3 1524 445 198 106 25 chr9 123186085 123186198 -889974 + PB1 SINE Alu 1 127 0 3 1524 225 212 137 96 chr9 123186208 123186281 -889891 + ID4_ SINE ID 4 79 -4 3 1524 22 0 0 0 chr9 123186281 123186303 -889869 + AT_rich Low_complexity Low_complexity 1 22 0 3 1524 211 282 195 26 chr9 123186869 123186982 -889190 - MIRm SINE MIR -63 213 82 3 1524 265 322 117 29 chr9 123187087 123187240 -888932 - MIR SINE MIR -82 186 14 3 1524 354 281 164 53 chr9 123187773 123188017 -888155 - MLT1A LTR MaLR -4 370 100 3 1524 210 150 0 0 chr9 123188044 123188084 -888088 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1524 1226 243 34 102 chr9 123188085 123188438 -887734 + MTD LTR MaLR 2 330 -89 3 1524 805 262 62 24 chr9 123188543 123188754 -887418 - ID_B1 SINE B4 -1 223 5 3 1524 319 315 248 58 chr9 123189503 123189900 -886272 - MLT1F LTR MaLR -75 473 1 3 1524 422 256 305 18 chr9 123190417 123190584 -885588 - B3 SINE B2 0 216 2 3 1524 377 54 41 41 chr9 123190818 123190915 -885257 + (CAAAA)n Simple_repeat Simple_repeat 5 101 0 3 1524 505 369 24 36 chr9 123191752 123191918 -884254 - RSINE1 SINE B4 0 165 2 4 1524 2409 161 31 8 chr9 123192207 123192595 -883577 + MTC LTR MaLR 25 421 0 4 1524 822 284 176 28 chr9 123192635 123193174 -882998 + L1ME2 LINE L1 5536 6154 -10 4 1524 23 0 0 0 chr9 123193174 123193197 -882975 + AT_rich Low_complexity Low_complexity 1 23 0 4 1524 410 274 10 10 chr9 123193198 123193294 -882878 + PB1D10 SINE Alu 1 96 -21 4 1524 914 118 7 0 chr9 123193319 123193455 -882717 - B1_Mus1 SINE Alu 0 148 12 4 1524 1029 267 47 8 chr9 123193625 123193878 -882294 + MTE2b LTR MaLR 1 263 -116 4 1524 227 182 18 0 chr9 123195160 123195215 -880957 + L1ME1 LINE L1 6124 6179 0 4 1524 350 57 19 0 chr9 123195264 123195317 -880855 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 4 1524 899 211 49 29 chr9 123195372 123195577 -880595 - B3 SINE B2 -3 213 5 4 1524 1003 251 62 14 chr9 123196350 123196625 -879547 + B4A SINE B4 3 290 -2 4 1524 442 179 29 18 chr9 123196628 123196799 -879373 + (CA)n Simple_repeat Simple_repeat 1 173 0 4 1524 681 97 0 0 chr9 123196835 123196938 -879234 + (CATA)n Simple_repeat Simple_repeat 4 106 0 4 1524 468 236 65 8 chr9 123198764 123198869 -877303 - RMER30 DNA MER1_type -1 201 93 4 1524 558 0 0 0 chr9 123198869 123198931 -877241 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1524 468 236 65 8 chr9 123198931 123198949 -877223 - RMER30 DNA MER1_type -110 92 71 4 1524 404 316 81 6 chr9 123199070 123199342 -876830 - L1MEd LINE L1 -4931 1188 920 4 1524 2046 111 55 12 chr9 123199555 123199884 -876288 + RLTR15 LTR ERVK 1 343 -16 4 1524 740 324 70 99 chr9 123199957 123199972 -876200 - MER54A LTR ERVL -353 548 537 4 1524 335 354 18 0 chr9 123199972 123200085 -876087 + PB1D10 SINE Alu 3 117 0 4 1524 740 324 70 99 chr9 123200085 123200483 -875689 - MER54A LTR ERVL -365 536 147 4 1524 288 0 0 0 chr9 123200506 123200538 -875634 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1524 468 0 0 0 chr9 123200538 123200589 -875583 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1524 826 181 14 0 chr9 123200806 123200944 -875228 - B1_Mur4 SINE Alu 0 150 11 4 1524 240 35 0 0 chr9 123201115 123201144 -875028 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1524 243 0 0 0 chr9 123201144 123201170 -875002 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1524 240 111 0 0 chr9 123201406 123201442 -874730 + (TTG)n Simple_repeat Simple_repeat 1 36 0 4 1524 580 206 37 0 chr9 123201443 123201550 -874622 - PB1D9 SINE Alu -2 118 8 4 1524 277 217 0 32 chr9 123201709 123201804 -874368 + CT-rich Low_complexity Low_complexity 2 93 0 4 1524 658 267 20 9 chr9 123201804 123201968 -874204 - ID_B1 SINE B4 -47 245 82 4 1524 412 230 100 0 chr9 123202213 123202313 -873859 + B3A SINE B2 2 111 -87 4 1524 205 147 0 0 chr9 123202388 123202422 -873750 - MIR SINE MIR -67 141 108 4 1524 571 248 171 18 chr9 123202554 123202691 -873481 + B3 SINE B2 1 165 -51 4 1524 422 49 0 16 chr9 123202691 123202753 -873419 + (CATA)n Simple_repeat Simple_repeat 2 62 0 4 1524 571 256 125 64 chr9 123202753 123202810 -873362 + B3 SINE B2 149 192 -3 4 1524 1566 192 72 36 chr9 123204573 123204934 -871238 + ORR1D1 LTR MaLR 1 374 0 4 1524 378 313 85 25 chr9 123204934 123205134 -871038 - ERVL-E-int LTR ERVL -2856 2811 2600 4 1524 288 0 0 0 chr9 123205673 123205705 -870467 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1524 820 157 32 171 chr9 123205717 123205851 -870321 - RMER12 LTR ERVK -559 763 663 4 1524 330 123 0 0 chr9 123205851 123205908 -870264 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1524 2429 168 32 65 chr9 123205908 123206462 -869710 - RMER12 LTR ERVK -392 930 435 4 1524 614 320 59 59 chr9 123206843 123207165 -869007 - RLTR26 LTR ERVK -225 417 96 4 1524 266 245 124 83 chr9 123207254 123207423 -868749 - RLTR31A_Mm LTR ERVK 0 557 382 4 190 1556 92 13 42 chr9 123207445 123207684 -868488 - L1_Mus1 LINE L1 -51 6516 6285 4 1525 871 179 35 23 chr9 123207684 123207856 -868316 - RLTR31A_Mm LTR ERVK -410 174 1 4 1525 2395 149 33 2 chr9 123207856 123208253 -867919 - RMER12 LTR ERVK -847 475 67 4 1525 709 294 33 16 chr9 123208253 123208436 -867736 - B3A SINE B2 -12 186 1 4 1525 180 239 71 150 chr9 123208535 123208559 -867613 - L2 LINE L2 -1835 1584 1560 4 1525 324 0 0 0 chr9 123208559 123208595 -867577 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1525 180 239 71 150 chr9 123208595 123208683 -867489 - L2 LINE L2 -1860 1559 1481 4 1525 1979 138 105 6 chr9 123209094 123209428 -866744 - ORR1B2 LTR MaLR 0 367 1 4 1525 666 196 0 0 chr9 123209706 123209813 -866359 + B3A SINE B2 2 108 -90 4 1525 446 33 17 0 chr9 123209821 123209881 -866291 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1525 1246 249 129 40 chr9 123209968 123210316 -865856 + MTEa LTR MaLR 1 379 0 4 1525 235 213 0 0 chr9 123210396 123210443 -865729 + L1MA5 LINE L1 6205 6251 -49 4 1525 255 237 60 30 chr9 123210466 123210566 -865606 + L1MA6 LINE L1 6175 6277 -23 4 1525 317 315 109 62 chr9 123210874 123211067 -865105 - L1ME4a LINE L1 -230 5894 5693 4 1525 259 255 78 2 chr9 123211091 123211194 -864978 - L1ME4a LINE L1 -2272 5610 5507 4 1525 516 195 52 26 chr9 123211234 123211350 -864822 + PB1D7 SINE Alu 1 119 -1 4 1525 970 215 49 0 chr9 123211580 123211785 -864387 + B3 SINE B2 2 216 0 4 1525 260 224 12 119 chr9 123211905 123212009 -864163 + ID4_ SINE ID 1 93 -59 4 1525 457 298 182 47 chr9 123212189 123212425 -863747 - MLT1J1 LTR MaLR -111 333 66 4 1525 231 281 19 68 chr9 123213226 123213329 -862843 - Charlie15a DNA MER1_type -39 185 88 4 1525 210 227 0 22 chr9 123213504 123213549 -862623 - ID4 SINE ID -29 54 11 4 1525 2852 25 0 0 chr9 123213685 123214009 -862163 - L1Md_A LINE L1 -1 6581 6258 4 1525 453 247 109 35 chr9 123214080 123214281 -861891 + L2a LINE L2 3205 3420 -6 4 1525 260 224 215 1 chr9 123214411 123214503 -861669 + B1F1 SINE Alu 10 116 -34 4 1525 259 150 33 0 chr9 123214530 123214590 -861582 + G-rich Low_complexity Low_complexity 1 62 0 4 1525 231 377 85 36 chr9 123214599 123214847 -861325 - L2c LINE L2 -70 3317 3058 4 1525 635 165 20 17 chr9 123214847 123215209 -860963 + (TG)n Simple_repeat Simple_repeat 1 363 0 4 1525 246 62 0 0 chr9 123215685 123215717 -860455 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1525 553 251 123 18 chr9 123217230 123217400 -858772 - B3A SINE B2 -6 192 5 4 1525 753 114 0 0 chr9 123217441 123217555 -858617 + (TC)n Simple_repeat Simple_repeat 1 114 0 4 1525 1079 82 7 0 chr9 123217578 123217725 -858447 - B1_Mus1 SINE Alu 0 148 1 4 1525 610 283 14 0 chr9 123217727 123217865 -858307 - ID_B1 SINE B4 -1 223 84 4 1525 200 367 68 34 chr9 123217932 123218138 -858034 - L2c LINE L2 -705 2714 2502 4 1525 645 248 12 44 chr9 123218750 123218910 -857262 + B4 SINE B4 1 155 -137 4 1525 236 261 0 0 chr9 123218929 123218975 -857197 + B4 SINE B4 245 290 -2 4 1525 989 298 88 21 chr9 123219026 123219365 -856807 + MER89 LTR ERV1 198 559 0 4 1525 283 272 52 20 chr9 123219657 123219766 -856406 + MIRc SINE MIR 23 135 -133 4 1525 189 0 0 0 chr9 123220343 123220364 -855808 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1525 1509 265 83 23 chr9 123220622 123221101 -855071 + RMER5 LTR ERV1 23 530 -4 4 1525 865 105 14 7 chr9 123221130 123221274 -854898 + (GAAA)n Simple_repeat Simple_repeat 4 148 0 4 1525 597 232 8 31 chr9 123221842 123221971 -854201 - ID_B1 SINE B4 0 224 99 4 1525 256 227 40 120 chr9 123222070 123222170 -854002 - B1F2 SINE Alu -50 99 8 4 1525 451 298 148 92 chr9 123222187 123222471 -853701 + MER74A LTR ERVL 1 300 -258 4 1525 276 305 19 0 chr9 123223806 123223911 -852261 + L1ME1 LINE L1 6031 6137 -42 4 1525 494 244 55 0 chr9 123223929 123224056 -852116 - B1F1 SINE Alu -14 135 2 4 1525 432 0 0 0 chr9 123224072 123224120 -852052 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1525 602 289 76 95 chr9 123224240 123224557 -851615 - ORR1E LTR MaLR -48 311 1 4 1525 1178 212 40 43 chr9 123224557 123224797 -851375 - ORR1E-int LTR MaLR -53 1527 1288 4 1525 3170 61 5 5 chr9 123224797 123225193 -850979 + MTA_Mm LTR MaLR 1 396 0 4 1525 1178 212 40 43 chr9 123225193 123225252 -850920 - ORR1E-int LTR MaLR -293 1287 1229 4 1525 528 238 30 36 chr9 123225275 123225441 -850731 - RMER10A LTR ERVL 0 442 278 4 1525 965 106 106 0 chr9 123225459 123225515 -850657 - Lx2 LINE L1 -58 6939 6884 4 1525 204 40 0 0 chr9 123225515 123225540 -850632 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 4 1525 965 106 106 0 chr9 123225540 123225643 -850529 - Lx2 LINE L1 -114 6883 6764 4 1525 4948 107 26 1 chr9 123225630 123226348 -849824 - Lx2 LINE L1 -352 6645 5910 4 1525 9271 53 3 13 chr9 123226348 123226939 -849233 - MusHAL1 LINE L1 -1476 1877 1296 4 1525 2011 125 90 14 chr9 123226939 123227295 -848877 + RLTR9A2 LTR ERVK 1 383 0 4 1525 9271 45 2 8 chr9 123227295 123228082 -848090 - MusHAL1 LINE L1 -2058 1295 512 4 1525 238 212 161 12 chr9 123228082 123228163 -848009 + RLTR13D3 LTR ERVK 1 93 -1021 4 1525 3647 87 11 54 chr9 123228788 123229323 -846849 + RLTR1B LTR ERV1 1 512 0 4 1525 3798 102 4 0 chr9 123229414 123229935 -846237 - L1VL4 LINE L1 -5592 710 188 4 1525 451 321 84 23 chr9 123229936 123230245 -845927 - MLT1C LTR MaLR -69 398 71 4 1525 521 187 11 0 chr9 123230298 123230389 -845783 + MTD LTR MaLR 3 94 -325 4 1525 279 0 0 0 chr9 123230633 123230664 -845508 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 4 1525 762 284 166 4 chr9 123230668 123230915 -845257 - B4A SINE B4 -2 290 4 4 1525 2196 158 34 48 chr9 123231238 123231651 -844521 - MTB_Mm LTR MaLR 0 407 1 4 1525 668 273 14 81 chr9 123231672 123231896 -844276 - B3A SINE B2 -1 215 8 4 1525 44 20 0 0 chr9 123231988 123232039 -844133 + AT_rich Low_complexity Low_complexity 1 51 0 4 1525 1005 33 0 0 chr9 123233791 123233912 -842260 + (GAA)n Simple_repeat Simple_repeat 3 123 0 4 1525 686 246 44 6 chr9 123234154 123234334 -841838 + B4 SINE B4 20 206 -86 4 1525 1547 213 71 8 chr9 123234339 123234690 -841482 - MTE2a LTR MaLR -2 377 5 4 1525 1506 125 186 3 chr9 123234690 123235002 -841170 - RLTR30 LTR ERV1 -10 369 1 5 1525 407 320 57 8 chr9 123235046 123235169 -841003 + B3A SINE B2 65 193 -5 5 1525 278 267 0 0 chr9 123235488 123235548 -840624 - ID SINE ID -164 60 1 5 1525 469 314 24 30 chr9 123235993 123236157 -840015 - RSINE1 SINE B4 0 165 3 5 1525 549 299 0 0 chr9 123236290 123236424 -839748 + ID_B1 SINE B4 91 224 0 5 1525 219 300 75 0 chr9 123236833 123236913 -839259 + ID_B1 SINE B4 90 175 -49 5 1525 1096 227 75 50 chr9 123237071 123237116 -839056 - MT2B LTR ERVL 0 601 544 5 1525 567 0 0 0 chr9 123237116 123237179 -838993 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1525 1096 209 168 143 chr9 123237179 123237625 -838547 - MT2B LTR ERVL -58 543 6 5 1525 242 292 82 36 chr9 123237968 123238078 -838094 - PB1D10 SINE Alu 0 117 3 5 1525 226 330 28 0 chr9 123238491 123238600 -837572 - MIR SINE MIR -77 185 74 5 1525 333 355 58 35 chr9 123238994 123239112 -837060 + Lx8 LINE L1 7047 7172 -301 5 1525 4098 133 122 63 chr9 123239112 123240041 -836131 + RLTR13C1 LTR ERVK 1 983 0 5 1525 333 355 58 35 chr9 123240041 123240094 -836078 + Lx8 LINE L1 7173 7222 -251 5 1525 404 285 48 20 chr9 123240175 123240322 -835850 + RMER15 LTR ERVL 425 575 0 5 1525 438 217 11 0 chr9 123241083 123241175 -834997 + MTD LTR MaLR 8 100 -319 5 1525 1689 208 88 13 chr9 123241179 123241564 -834608 + MTD LTR MaLR 3 416 -3 5 1525 213 180 129 16 chr9 123243223 123243285 -832887 - L2b LINE L2 -18 3357 3289 5 1525 180 0 0 0 chr9 123243433 123243453 -832719 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 5 1525 1080 96 6 0 chr9 123243453 123243610 -832562 - B2_Mm1a SINE B2 -33 160 3 5 1525 329 317 147 53 chr9 123243916 123244312 -831860 - LTR33 LTR ERVL -49 466 34 5 1525 542 290 72 0 chr9 123245301 123245439 -830733 + RSINE1 SINE B4 1 148 -17 5 1525 372 22 0 0 chr9 123245445 123245490 -830682 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1525 204 278 14 0 chr9 123245926 123245998 -830174 + GA-rich Low_complexity Low_complexity 4 76 0 5 1525 457 254 29 43 chr9 123246140 123246280 -829892 - ID_B1 SINE B4 -1 223 86 5 1525 1112 69 0 0 chr9 123246478 123246622 -829550 - B1_Mus1 SINE Alu 0 148 5 5 1525 1914 171 42 25 chr9 123248079 123248480 -827692 - RMER10A LTR ERVL -30 412 5 5 1525 218 284 13 39 chr9 123248560 123248637 -827535 - MER5A DNA MER1_type -46 143 69 5 1525 208 216 0 0 chr9 123248637 123248674 -827498 + C-rich Low_complexity Low_complexity 2 38 0 5 1525 908 201 42 0 chr9 123248677 123248866 -827306 - B3 SINE B2 -10 206 10 5 1525 300 200 14 28 chr9 123249288 123249360 -826812 - MER5A DNA MER1_type -117 72 2 5 1525 1349 206 95 70 chr9 123249560 123249930 -826242 - MTEb LTR MaLR 0 379 1 5 1525 539 276 45 6 chr9 123249972 123250129 -826043 + RSINE1 SINE B4 1 163 -2 5 1525 22 63 0 31 chr9 123250143 123250179 -825993 + AT_rich Low_complexity Low_complexity 1 35 0 5 1525 847 186 28 0 chr9 123250179 123250324 -825848 - B1_Mur4 SINE Alu 0 150 2 5 1525 22 63 0 31 chr9 123250324 123250352 -825820 + AT_rich Low_complexity Low_complexity 1 28 0 5 1525 372 337 86 20 chr9 123250431 123250628 -825544 - ID_B1 SINE B4 -14 210 1 5 1525 235 305 36 45 chr9 123251875 123251985 -824187 + MamRep434 DNA TcMar 221 329 -97 5 1525 252 297 10 62 chr9 123252019 123252116 -824056 - PB1D10 SINE Alu -5 112 21 5 1525 325 362 0 15 chr9 123252886 123253018 -823154 + CT-rich Low_complexity Low_complexity 1 130 0 5 1525 308 44 44 0 chr9 123253149 123253194 -822978 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 1525 421 250 0 0 chr9 123253201 123253281 -822891 - PB1D10 SINE Alu -11 106 27 5 1525 310 205 18 9 chr9 123253622 123253708 -822464 - MTEb LTR MaLR -9 370 287 5 1525 1437 203 116 6 chr9 123253808 123254135 -822037 + ORR1D2 LTR MaLR 8 370 0 5 1525 225 182 0 0 chr9 123254580 123254624 -821548 + B1F SINE Alu 40 83 -66 5 1525 723 277 287 7 chr9 123254626 123254922 -821250 + ORR1E LTR MaLR 1 379 0 5 1525 268 188 0 0 chr9 123254923 123254971 -821201 + B1F SINE Alu 87 134 -15 5 1525 3402 203 119 117 chr9 123254973 123255185 -820987 + RMER12 LTR ERVK 1 184 -1138 5 1525 395 38 0 19 chr9 123255185 123255239 -820933 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 5 1525 3402 203 119 117 chr9 123255239 123255265 -820907 + RMER12 LTR ERVK 185 188 -1134 5 1525 1298 72 27 22 chr9 123255265 123255450 -820722 - B2_Mm2 SINE B2 -9 186 1 5 1525 3402 203 119 117 chr9 123255450 123256086 -820086 + RMER12 LTR ERVK 189 856 -466 5 1525 531 0 0 0 chr9 123256086 123256145 -820027 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1525 3402 202 115 102 chr9 123256145 123256590 -819582 + RMER12 LTR ERVK 857 1404 0 5 1525 1521 203 69 9 chr9 123257317 123257555 -818617 + ORR1D2 LTR MaLR 3 262 -108 5 1525 1951 161 12 49 chr9 123257555 123257981 -818191 - RMER17C LTR ERVK 0 410 1 5 1525 1521 203 69 9 chr9 123257981 123258089 -818083 + ORR1D2 LTR MaLR 263 370 0 5 1525 712 0 23 0 chr9 123258150 123258238 -817934 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1525 490 335 0 16 chr9 123258271 123258384 -817788 + B3A SINE B2 1 112 -86 5 1525 1446 92 91 19 chr9 123258384 123258594 -817578 + URR1A DNA MER1_type 1 225 -1 5 1525 490 335 0 16 chr9 123258594 123258665 -817507 + B3A SINE B2 113 182 -16 5 1525 783 124 14 7 chr9 123258665 123258811 -817361 + (GAAA)n Simple_repeat Simple_repeat 1 147 0 5 1525 1229 54 0 0 chr9 123258862 123259009 -817163 + B1_Mus1 SINE Alu 2 148 0 5 1525 234 0 0 0 chr9 123259011 123259037 -817135 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1525 1053 200 5 41 chr9 123259318 123259414 -816758 + MTD LTR MaLR 1 88 -331 5 1525 1304 111 16 0 chr9 123259414 123259603 -816569 + B2_Mm2 SINE B2 2 193 -2 5 1525 1053 200 5 41 chr9 123259603 123259725 -816447 + MTD LTR MaLR 89 211 -208 5 1525 1097 191 33 23 chr9 123259727 123259941 -816231 + B3 SINE B2 1 216 0 5 1525 242 164 18 0 chr9 123259955 123260010 -816162 + GA-rich Low_complexity Low_complexity 2 57 0 5 1525 506 131 20 20 chr9 123260010 123260111 -816061 + MTD LTR MaLR 200 300 -119 5 1525 419 181 0 122 chr9 123260117 123260529 -815643 + CT-rich Low_complexity Low_complexity 1 361 0 5 1525 814 183 11 28 chr9 123260551 123260731 -815441 + MTC LTR MaLR 245 421 0 5 1525 225 358 52 96 chr9 123261516 123261574 -814598 + MER82 DNA MER2_type 523 576 -77 5 1525 2218 125 365 10 chr9 123261574 123262083 -814089 - RMER6C LTR ERVK 0 690 1 5 1525 225 358 52 96 chr9 123262083 123262160 -814012 + MER82 DNA MER2_type 577 652 -1 5 1525 519 293 0 0 chr9 123262253 123262376 -813796 + RSINE1 SINE B4 21 143 -22 5 1525 1260 63 0 0 chr9 123262839 123263335 -812837 + (GA)n Simple_repeat Simple_repeat 1 496 0 5 1525 216 281 72 12 chr9 123263398 123263481 -812691 + L2b LINE L2 3284 3371 -4 5 1525 271 287 89 33 chr9 123264002 123264092 -812080 + RSINE1 SINE B4 50 144 -21 5 1525 1320 234 17 31 chr9 123264211 123264449 -811723 + MERVK26-int LTR ERVK 3933 4168 -2751 5 1525 2408 69 119 11 chr9 123264449 123264801 -811371 + RLTR10 LTR ERVK 1 390 0 5 1525 1320 234 17 31 chr9 123264801 123264849 -811323 + MERVK26-int LTR ERVK 4169 4215 -2704 5 1525 2947 135 26 2 chr9 123264850 123265347 -810825 + RMER20A LTR ERVK 8 516 0 5 1525 408 185 136 0 chr9 123265377 123265458 -810714 + MERVK26-int LTR ERVK 6828 6919 0 5 1525 1303 158 4 17 chr9 123265596 123265834 -810338 - RLTR41 LTR ERV1 0 446 212 5 1525 758 259 262 34 chr9 123265833 123266193 -809979 + RMER20B LTR ERVK 148 589 -38 5 1525 319 293 63 21 chr9 123266245 123266388 -809784 + RMER5 LTR ERV1 69 217 -317 5 1525 399 237 20 10 chr9 123266853 123266951 -809221 + RMER5 LTR ERV1 259 357 -177 5 1525 414 0 0 0 chr9 123267064 123267110 -809062 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1525 604 187 46 13 chr9 123267347 123267499 -808673 + RMER5 LTR ERV1 352 508 -26 5 1525 367 278 17 42 chr9 123268234 123268354 -807818 - PB1D10 SINE Alu 0 117 1 5 1525 696 119 0 0 chr9 123268430 123268539 -807633 + (GGA)n Simple_repeat Simple_repeat 3 111 0 5 1525 1571 278 23 12 chr9 123268873 123269354 -806818 + Lx6 LINE L1 73 558 -7170 5 1525 24158 135 30 13 chr9 123269351 123270030 -806142 + Lx6 LINE L1 859 1543 -4337 5 1525 1134 58 0 0 chr9 123270030 123270169 -806003 + B1_Mus1 SINE Alu 1 139 -9 5 1525 24158 144 63 30 chr9 123270169 123273646 -802526 + Lx6 LINE L1 1544 5149 -731 5 1525 1876 126 78 12 chr9 123273646 123273991 -802181 - RLTR9A LTR ERVK 0 368 1 5 1525 24158 144 63 30 chr9 123273991 123274078 -802094 + Lx6 LINE L1 5150 5263 -617 5 1525 242 29 29 0 chr9 123274078 123274113 -802059 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1525 24158 154 60 42 chr9 123274113 123275009 -801163 + Lx6 LINE L1 5264 6160 -1300 5 1525 180 0 0 0 chr9 123276614 123276634 -799538 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1525 361 238 0 12 chr9 123276999 123277080 -799092 - ID4_ SINE ID -3 80 1 5 1525 728 250 26 26 chr9 123277191 123277384 -798788 - B3A SINE B2 -5 193 1 5 1525 590 225 14 14 chr9 123277391 123277531 -798641 - B1F SINE Alu -1 148 9 5 1525 327 293 0 0 chr9 123277752 123277827 -798345 - ID2 SINE ID -3 80 6 5 1525 247 313 147 15 chr9 123277967 123277983 -798189 - B4A SINE B4 -48 244 91 5 1525 463 232 0 67 chr9 123277983 123278103 -798069 - PB1D10 SINE Alu 0 117 6 5 1525 435 291 44 22 chr9 123278185 123278208 -797964 + B1F SINE Alu 1 140 -9 5 1525 584 228 0 0 chr9 123278208 123278322 -797850 + ID_B1 SINE B4 102 215 -9 5 1525 346 221 93 0 chr9 123278431 123278517 -797655 + PB1D10 SINE Alu 9 102 -15 5 1525 438 225 148 46 chr9 123278607 123278803 -797369 - B3 SINE B2 0 216 1 5 1525 799 253 80 55 chr9 123278808 123279046 -797126 - B4A SINE B4 -38 254 11 5 1525 362 262 24 0 chr9 123279173 123279257 -796915 - RSINE1 SINE B4 -75 90 5 5 1525 191 328 30 0 chr9 123279926 123279993 -796179 + L2a LINE L2 3353 3421 -5 5 1525 345 100 0 0 chr9 123280379 123280429 -795743 + (T)n Simple_repeat Simple_repeat 1 50 0 5 1525 1207 74 0 0 chr9 123280429 123280577 -795595 - B1_Mus1 SINE Alu 0 148 1 5 1525 1287 64 36 46 chr9 123280582 123280778 -795394 - B2_Mm2 SINE B2 0 195 2 5 1525 1016 219 125 40 chr9 123281245 123281549 -794623 - ORR1E LTR MaLR -26 333 4 5 1525 394 303 67 46 chr9 123281551 123281745 -794427 + MIR SINE MIR 3 200 -62 5 1525 2359 102 12 0 chr9 123282653 123282976 -793196 + ORR1A2 LTR MaLR 1 327 0 5 1525 198 271 115 0 chr9 123283238 123283334 -792838 - MIRb SINE MIR -5 263 157 6 1525 327 169 270 0 chr9 123284147 123284236 -791936 + PB1D10 SINE Alu 3 115 -2 6 1525 438 96 0 0 chr9 123284236 123284309 -791863 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 1525 269 282 11 23 chr9 123284548 123284635 -791537 - BC1_Mm scRNA scRNA -65 87 2 6 1525 381 250 48 0 chr9 123285013 123285117 -791055 + PB1D10 SINE Alu 9 117 0 6 1525 805 239 211 22 chr9 123285173 123285490 -790682 - MTEa LTR MaLR -2 377 1 6 1525 281 288 0 12 chr9 123285930 123286011 -790161 + ID2 SINE ID 1 80 -3 6 1525 1226 34 7 0 chr9 123287487 123287633 -788539 - B1_Mus1 SINE Alu 0 148 2 6 1525 377 215 0 0 chr9 123287769 123287834 -788338 - ID2 SINE ID -18 65 1 6 1525 375 257 49 10 chr9 123287849 123287951 -788221 - PB1D10 SINE Alu -9 108 3 6 1525 263 299 23 0 chr9 123288075 123288162 -788010 + ID_B1 SINE B4 78 166 -58 6 1525 302 256 263 0 chr9 123288549 123288686 -787486 + B3 SINE B2 3 175 -41 6 1525 246 293 17 0 chr9 123289032 123289090 -787082 - ID4_ SINE ID -23 60 2 6 1525 282 231 29 47 chr9 123289415 123289538 -786634 + MIRb SINE MIR 43 154 -54 6 1525 224 224 15 0 chr9 123289601 123289668 -786504 + GA-rich Low_complexity Low_complexity 2 69 0 6 1525 208 229 129 24 chr9 123289691 123289776 -786396 + MIRb SINE MIR 174 267 -1 6 1525 297 197 0 0 chr9 123290053 123290114 -786058 + GA-rich Low_complexity Low_complexity 2 62 0 6 1525 1075 193 82 112 chr9 123290123 123290539 -785633 - MT2A LTR ERVL -58 543 5 6 1525 992 130 7 20 chr9 123290597 123290746 -785426 - B1_Mur3 SINE Alu -1 148 2 6 1525 953 242 5 28 chr9 123290788 123291005 -785167 - B3 SINE B2 -1 215 4 6 1525 333 0 0 0 chr9 123291137 123291174 -784998 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1525 439 222 18 53 chr9 123291200 123291314 -784858 + PB1D10 SINE Alu 5 114 -3 6 1525 314 198 11 85 chr9 123291648 123291742 -784430 + PB1D9 SINE Alu 2 88 -32 6 1525 834 228 22 50 chr9 123292504 123292726 -783446 - B3 SINE B2 0 216 1 6 1525 288 310 0 11 chr9 123293150 123293238 -782934 + PB1D10 SINE Alu 1 87 -30 6 1525 231 227 31 83 chr9 123293573 123293669 -782503 + PB1D10 SINE Alu 27 117 0 6 1525 326 300 126 9 chr9 123296242 123296353 -779819 - PB1 SINE Alu -3 124 1 6 1525 461 229 21 0 chr9 123296683 123296779 -779393 - PB1D10 SINE Alu 0 117 20 6 1525 186 40 0 0 chr9 123297537 123297549 -778623 + (G)n Simple_repeat Simple_repeat 1 12 0 6 1525 2982 21 3 0 chr9 123297549 123297885 -778287 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1525 186 40 0 0 chr9 123297885 123297897 -778275 + (G)n Simple_repeat Simple_repeat 1 12 0 6 1525 1100 191 20 20 chr9 123299838 123300041 -776131 - B3 SINE B2 -13 203 1 6 1525 565 291 42 60 chr9 123300128 123300413 -775759 + RLTR18 LTR ERVK 1 280 -336 6 1525 954 273 21 58 chr9 123300475 123300814 -775358 + RLTR18B LTR ERVK 186 504 -8 6 1525 498 208 30 67 chr9 123300984 123301118 -775054 - B1_Mur4 SINE Alu 0 150 22 6 1525 404 250 53 53 chr9 123301158 123301310 -774862 - B4A SINE B4 -131 161 10 6 1525 565 244 59 0 chr9 123302196 123302331 -773841 - RSINE1 SINE B4 -21 144 2 6 1525 329 151 0 61 chr9 123302786 123302885 -773287 + C-rich Low_complexity Low_complexity 5 97 0 6 1525 333 0 0 0 chr9 123302896 123302933 -773239 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1525 539 318 48 37 chr9 123302976 123303244 -772928 - B4A SINE B4 -21 271 1 6 1525 186 43 0 0 chr9 123303503 123303526 -772646 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1525 291 113 0 0 chr9 123303526 123303579 -772593 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1525 384 22 0 0 chr9 123304997 123305042 -771130 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1525 459 261 148 0 chr9 123305099 123305241 -770931 - B3 SINE B2 -16 200 38 6 1525 484 164 30 7 chr9 123306385 123306520 -769652 + GA-rich Low_complexity Low_complexity 1 138 0 6 1525 554 273 281 17 chr9 123307335 123307566 -768606 + B4A SINE B4 1 292 0 6 1525 480 105 0 0 chr9 123307595 123307671 -768501 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 1525 735 71 0 0 chr9 123308318 123308416 -767756 + (TC)n Simple_repeat Simple_repeat 1 98 0 6 1525 768 172 0 0 chr9 123309387 123309515 -766657 + B1_Mur3 SINE Alu 9 136 -13 6 1525 230 0 33 0 chr9 123309519 123309549 -766623 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1525 488 278 32 0 chr9 123309925 123310051 -766121 - B1F1 SINE Alu -1 148 19 6 1525 312 237 0 0 chr9 123310624 123310683 -765489 - ID4_ SINE ID -10 73 15 6 1525 330 172 53 4 chr9 123310797 123310875 -765297 - B1F SINE Alu -26 121 39 6 1525 681 13 0 0 chr9 123310894 123310972 -765200 + (GAAAA)n Simple_repeat Simple_repeat 3 80 0 6 1525 760 211 118 5 chr9 123311678 123311864 -764308 - B3 SINE B2 -6 210 4 6 1525 24 0 0 0 chr9 123312243 123312267 -763905 + AT_rich Low_complexity Low_complexity 1 24 0 6 1525 454 248 18 0 chr9 123312584 123312693 -763479 + PB1D7 SINE Alu 10 120 0 6 1525 1004 104 28 0 chr9 123312725 123312869 -763303 - B1_Mur4 SINE Alu 0 150 3 6 1525 447 19 0 0 chr9 123312950 123313002 -763170 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1525 408 20 0 0 chr9 123313002 123313050 -763122 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1525 453 19 0 0 chr9 123313800 123313854 -762318 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1525 31 82 0 0 chr9 123313871 123313944 -762228 + AT_rich Low_complexity Low_complexity 1 73 0 6 1525 27 0 0 0 chr9 123314705 123314732 -761440 + AT_rich Low_complexity Low_complexity 1 27 0 6 1525 13356 45 0 3 chr9 123314743 123317073 -759099 - L1Md_F2 LINE L1 -2 6580 4258 6 1525 663 204 189 72 chr9 123317074 123317254 -758918 - B3 SINE B2 -15 201 1 6 1525 360 200 14 0 chr9 123317283 123317353 -758819 + ID4 SINE ID 2 72 -11 6 1525 647 118 9 0 chr9 123317439 123317474 -758698 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 6 1525 1226 48 0 0 chr9 123317474 123317621 -758551 + B1_Mm SINE Alu 1 147 0 6 1525 647 118 9 0 chr9 123317621 123317695 -758477 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 6 1525 359 172 0 0 chr9 123317707 123317765 -758407 + ID SINE ID 4 61 -163 6 1525 796 238 5 129 chr9 123318050 123318267 -757905 + B3A SINE B2 2 191 -4 6 1525 1352 85 0 6 chr9 123318270 123318448 -757724 + B2_Mm2 SINE B2 1 177 -18 6 1525 873 160 20 27 chr9 123318889 123319037 -757135 + B1_Mur2 SINE Alu 3 149 0 6 1525 279 305 83 6 chr9 123320094 123320262 -755910 + L1ME3A LINE L1 5975 6155 -18 6 1525 386 272 0 11 chr9 123320476 123320569 -755603 + PB1D10 SINE Alu 1 92 -25 6 1525 240 228 75 12 chr9 123321574 123321654 -754518 + MIR3 SINE MIR 112 196 -12 6 1525 655 196 0 139 chr9 123322752 123322924 -753248 + B1_Mur4 SINE Alu 2 149 -1 6 1525 1579 100 31 16 chr9 123323218 123323472 -752700 - ORR1B1 LTR MaLR 0 394 137 6 1525 3452 47 2 2 chr9 123323472 123323902 -752270 + L1_Mm LINE L1 3792 4221 -1662 6 1525 21 0 0 0 chr9 123324096 123324117 -752055 + AT_rich Low_complexity Low_complexity 1 21 0 6 1525 752 229 57 0 chr9 123324132 123324307 -751865 - B3A SINE B2 -13 185 1 6 1525 258 278 20 20 chr9 123324526 123324625 -751547 - MLT1L LTR MaLR 0 610 512 6 1525 323 277 73 78 chr9 123324661 123324853 -751319 - MLT1L LTR MaLR -199 411 221 6 1525 1196 264 69 64 chr9 123325520 123326001 -750171 + RMER5 LTR ERV1 43 525 -9 6 1525 281 244 70 0 chr9 123326624 123326710 -749462 + PB1D10 SINE Alu 18 109 -8 6 1525 648 48 0 0 chr9 123326710 123326794 -749378 + (TC)n Simple_repeat Simple_repeat 1 84 0 6 1525 234 298 0 77 chr9 123328266 123328357 -747815 + RSINE1 SINE B4 67 150 -15 6 1525 253 204 36 18 chr9 123328984 123329039 -747133 + ORR1C2 LTR MaLR 22 77 -301 6 1525 450 75 287 0 chr9 123329036 123329130 -747042 - B1_Mus2 SINE Alu -2 145 25 6 1525 1605 149 48 38 chr9 123329129 123329444 -746728 + ORR1C2 LTR MaLR 64 381 -3 6 1525 530 198 278 6 chr9 123329444 123329615 -746557 - MTEb LTR MaLR -161 218 1 6 1525 225 0 0 0 chr9 123329617 123329642 -746530 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1525 1660 157 76 95 chr9 123329959 123330339 -745833 - ORR1D1 LTR MaLR 0 374 2 6 1525 4469 150 82 70 chr9 123331623 123332514 -743658 - RMER19B LTR ERVK 0 902 1 6 1525 1030 179 42 28 chr9 123332717 123332930 -743242 - B3 SINE B2 0 216 1 6 1525 283 286 70 20 chr9 123332937 123333037 -743135 - PB1D10 SINE Alu -5 112 8 6 1525 265 260 0 171 chr9 123333074 123333162 -743010 + ID4 SINE ID 11 83 0 6 1525 405 219 0 0 chr9 123333197 123333352 -742820 + (TG)n Simple_repeat Simple_repeat 2 156 0 6 1525 779 250 26 15 chr9 123333624 123333827 -742345 - B3A SINE B2 0 195 7 6 1525 478 98 0 24 chr9 123333840 123333924 -742248 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 6 1525 351 0 0 0 chr9 123333982 123334021 -742151 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1525 267 200 73 0 chr9 123334379 123334434 -741738 - MLT1J LTR MaLR -368 144 86 6 1525 219 69 0 0 chr9 123335160 123335189 -740983 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 1525 750 273 70 36 chr9 123335191 123335522 -740650 - RLTR15 LTR ERVK -17 342 1 7 1525 530 304 98 119 chr9 123335536 123335587 -740585 - HAL1 LINE L1 -386 2121 2084 7 1525 380 242 221 16 chr9 123335587 123335709 -740463 - B1F SINE Alu -1 148 2 7 1525 530 304 98 119 chr9 123335709 123336176 -739996 - HAL1 LINE L1 -424 2083 1614 7 1525 229 340 31 41 chr9 123336809 123336907 -739265 - BC1_Mm scRNA scRNA -54 98 2 7 1525 269 343 0 0 chr9 123336948 123337015 -739157 + PB1D10 SINE Alu 5 71 -46 7 1525 741 271 90 0 chr9 123337027 123337204 -738968 - B3 SINE B2 -8 208 16 7 1525 231 58 36 55 chr9 123337241 123337296 -738876 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 7 1525 303 325 11 11 chr9 123337334 123337421 -738751 + RSINE1 SINE B4 3 89 -76 7 1525 432 252 93 0 chr9 123337664 123337771 -738401 + PB1D10 SINE Alu 1 117 0 7 190 3309 107 41 16 chr9 123338617 123339128 -737044 - RLTR28 LTR ERVL 0 524 1 7 1526 290 270 37 78 chr9 123339369 123339586 -736586 - RLTR15 LTR ERVK -46 313 106 7 1526 1042 284 58 49 chr9 123339857 123340287 -735885 - BGLII_B LTR ERVK -3 438 5 7 1526 2565 140 34 57 chr9 123341607 123342084 -734088 + RMER4A LTR ERVK 1 466 0 7 1526 348 249 108 91 chr9 123342149 123342302 -733870 - MER5A DNA MER1_type 0 189 34 7 1526 195 69 0 0 chr9 123342302 123342331 -733841 + (TGG)n Simple_repeat Simple_repeat 3 31 0 7 1526 348 249 108 91 chr9 123342331 123342363 -733809 - MER5A DNA MER1_type -156 33 1 7 1526 345 244 267 0 chr9 123342371 123342502 -733670 + MER5A1 DNA MER1_type 1 166 0 7 1526 574 252 65 8 chr9 123342584 123342708 -733464 + ID_B1 SINE B4 88 218 -6 7 1526 189 321 52 86 chr9 123342723 123342839 -733333 - MER5B DNA MER1_type -49 129 18 7 1526 296 133 17 0 chr9 123343036 123343096 -733076 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 7 1526 236 358 15 0 chr9 123343699 123343766 -732406 + L2c LINE L2 3289 3356 -31 7 1526 387 299 0 0 chr9 123344148 123344237 -731935 + ORSL DNA Tip100 15 103 -172 7 1526 912 214 40 15 chr9 123344237 123344436 -731736 + B3 SINE B2 2 205 -11 7 1526 292 277 60 76 chr9 123344457 123344643 -731529 - RLTR15 LTR ERVK -128 231 51 7 1526 617 88 39 0 chr9 123344643 123344745 -731427 - Lx2A LINE L1 -3 7005 6900 7 1526 252 292 49 74 chr9 123344745 123344780 -731392 - RLTR15 LTR ERVK -469 109 81 7 1526 268 167 0 0 chr9 123344917 123344965 -731207 + B3 SINE B2 157 204 -12 7 1526 415 349 0 0 chr9 123345023 123345132 -731040 + ORSL DNA Tip100 165 273 -2 7 1526 276 100 0 0 chr9 123346166 123346206 -729966 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1526 771 42 0 0 chr9 123346206 123346301 -729871 - B1_Mus2 SINE Alu 0 147 53 7 1526 329 306 105 36 chr9 123347377 123347625 -728547 - LTR16B1 LTR ERVL -5 475 211 7 1526 401 284 28 0 chr9 123348080 123348189 -727983 + PB1D10 SINE Alu 1 112 -5 7 1526 220 208 0 20 chr9 123348189 123348238 -727934 + GA-rich Low_complexity Low_complexity 2 49 0 7 1526 589 231 41 14 chr9 123348256 123348401 -727771 + B1_Mur2 SINE Alu 1 149 0 7 1526 813 216 0 20 chr9 123349166 123349317 -726855 - B1_Mur2 SINE Alu 0 149 2 7 1526 24 0 0 0 chr9 123350124 123350148 -726024 + AT_rich Low_complexity Low_complexity 1 24 0 7 1526 921 150 7 0 chr9 123350159 123350306 -725866 - B1_Mus1 SINE Alu 0 148 1 7 1526 260 250 27 40 chr9 123350358 123350433 -725739 - RSINE1 SINE B4 -5 160 87 7 1526 421 332 16 0 chr9 123351178 123351294 -724878 + B1F1 SINE Alu 11 138 -11 7 1526 284 266 41 99 chr9 123351246 123351417 -724755 + MT2B2 LTR ERVL 118 278 -306 7 1526 898 61 0 0 chr9 123351324 123351438 -724734 + B1_Mus1 SINE Alu 29 142 -6 7 1526 299 140 0 81 chr9 123351422 123351439 -724733 - RMER4B LTR ERVK -363 222 210 7 1526 249 57 0 0 chr9 123351439 123351474 -724698 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 7 1526 299 140 0 81 chr9 123351474 123351518 -724654 - RMER4B LTR ERVK -376 209 166 7 1526 1198 41 0 13 chr9 123351518 123351667 -724505 + B1_Mm SINE Alu 1 147 0 7 1526 815 141 49 89 chr9 123351685 123351888 -724284 - RMER4B LTR ERVK -390 195 1 7 1526 243 281 24 81 chr9 123351922 123352046 -724126 - L1ME3B LINE L1 -83 6157 6041 7 1526 499 260 22 58 chr9 123352122 123352261 -723911 - RSINE1 SINE B4 -1 164 31 7 1526 228 242 162 0 chr9 123352469 123352568 -723604 - L1MEg LINE L1 -896 5250 5136 7 1526 344 284 0 0 chr9 123352573 123352647 -723525 + ID4_ SINE ID 1 74 -9 7 1526 359 296 55 25 chr9 123353031 123353194 -722978 - L1MEg LINE L1 -4535 1707 1540 7 1526 575 113 179 75 chr9 123353196 123353330 -722842 - B1_Mur4 SINE Alu -1 149 2 7 1526 673 192 0 0 chr9 123353502 123353622 -722550 + B1_Mur1 SINE Alu 9 128 -21 7 1526 1220 90 62 0 chr9 123353760 123353937 -722235 - B2_Mm2 SINE B2 -7 188 1 7 1526 531 0 0 0 chr9 123354072 123354131 -722041 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1526 231 36 0 0 chr9 123354131 123354158 -722014 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1526 536 233 78 0 chr9 123354211 123354327 -721845 - B3A SINE B2 -73 125 1 7 1526 1384 80 5 5 chr9 123355441 123355629 -720543 - B2_Mm2 SINE B2 -6 189 2 7 1526 277 319 0 117 chr9 123355764 123355840 -720332 - RMER15 LTR ERVL -159 416 357 7 1526 188 0 74 0 chr9 123355840 123355867 -720305 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 7 1526 277 319 0 117 chr9 123355867 123355953 -720219 - RMER15 LTR ERVL -219 356 273 7 1526 348 264 32 184 chr9 123355945 123356135 -720037 - RMER15 LTR ERVL -414 161 1 7 1526 1026 197 34 24 chr9 123356295 123356503 -719669 + B3 SINE B2 2 211 -5 7 1526 25 31 0 0 chr9 123356922 123356954 -719218 + AT_rich Low_complexity Low_complexity 1 32 0 7 1526 318 179 60 0 chr9 123357066 123357133 -719039 + PB1D9 SINE Alu 29 99 -21 7 1526 533 188 108 83 chr9 123357144 123357301 -718871 - RSINE1 SINE B4 -2 163 3 7 1526 239 231 0 10 chr9 123357340 123357395 -718777 + B1F SINE Alu 15 66 -54 7 1526 259 273 107 34 chr9 123357776 123357890 -718282 - PB1D10 SINE Alu -22 125 2 7 1526 807 216 119 0 chr9 123358554 123358739 -717433 - B3 SINE B2 -9 207 1 7 1526 436 208 45 0 chr9 123359243 123359397 -716775 + GA-rich Low_complexity Low_complexity 3 163 0 7 1526 913 169 15 69 chr9 123359653 123359856 -716316 - B2_Mm2 SINE B2 -3 192 1 7 1526 576 202 114 0 chr9 123360552 123360666 -715506 + B1_Mur1 SINE Alu 9 135 -14 7 1526 262 170 0 70 chr9 123360697 123360754 -715418 + B3 SINE B2 3 55 -161 7 1526 652 197 0 16 chr9 123360752 123360876 -715296 + ORR1D1 LTR MaLR 231 352 -22 7 1526 2432 137 13 10 chr9 123360880 123361265 -714907 - ORR1B1 LTR MaLR -8 386 1 7 1526 267 259 146 35 chr9 123361568 123361712 -714460 - MIRc SINE MIR -104 164 5 7 1526 467 165 0 12 chr9 123364266 123364346 -711826 - PB1D7 SINE Alu -1 119 41 7 1526 295 206 134 52 chr9 123364346 123364363 -711809 - ID_B1 SINE B4 0 224 120 7 1526 387 0 0 0 chr9 123365233 123365276 -710896 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1526 216 0 0 0 chr9 123365276 123365299 -710873 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1526 754 241 87 63 chr9 123365325 123365614 -710558 - B4 SINE B4 0 292 15 7 1526 284 302 32 0 chr9 123365731 123365794 -710378 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 7 1526 264 303 40 0 chr9 123367237 123367313 -708859 - Charlie10b DNA MER1_type -157 85 7 7 1526 239 208 21 0 chr9 123367608 123367656 -708516 + tRNA-Ala-GCY_ tRNA tRNA 19 67 -8 7 1526 307 254 0 0 chr9 123367749 123367812 -708360 + tRNA-Ala-GCA tRNA tRNA 2 64 -11 7 1526 246 340 0 0 chr9 123367812 123367830 -708342 + BC1_Mm scRNA scRNA 22 88 -64 7 1526 1171 194 5 14 chr9 123369060 123369274 -706898 + B3 SINE B2 4 215 -1 7 1526 884 146 28 7 chr9 123369411 123369556 -706616 - B1_Mur3 SINE Alu 0 149 2 7 1526 255 282 25 13 chr9 123369584 123369663 -706509 - ID4 SINE ID -2 81 2 7 1526 394 288 53 8 chr9 123369679 123369812 -706360 - B1F SINE Alu -9 140 2 7 1526 268 255 101 63 chr9 123370135 123370184 -705988 - L2a LINE L2 -34 3392 3343 7 1526 449 282 25 8 chr9 123370184 123370302 -705870 + PB1D9 SINE Alu 1 120 0 7 1526 268 255 101 63 chr9 123370302 123370411 -705761 - L2a LINE L2 -84 3342 3228 7 1526 3593 15 0 0 chr9 123370909 123371305 -704867 + LSU-rRNA_Hsa rRNA rRNA 4192 4587 -448 7 1526 225 231 39 0 chr9 123371543 123371595 -704577 + ID4_ SINE ID 28 81 -2 7 1526 423 300 27 110 chr9 123371551 123371697 -704475 + ID_B1 SINE B4 37 170 -54 7 1526 453 231 33 11 chr9 123371625 123371717 -704455 + PB1D10 SINE Alu 18 111 -6 7 1526 210 179 26 0 chr9 123371720 123371759 -704413 - MER5B DNA MER1_type -138 40 1 7 1526 227 333 143 0 chr9 123372275 123372401 -703771 - MIRb SINE MIR -66 202 59 7 1526 1528 47 0 16 chr9 123372401 123372595 -703577 - B2_Mm2 SINE B2 -3 192 2 7 1526 376 250 73 0 chr9 123373190 123373286 -702886 - PB1D7 SINE Alu -8 112 10 7 1526 901 211 5 44 chr9 123373286 123373489 -702683 - B3A SINE B2 -2 196 2 7 1526 276 100 0 0 chr9 123373531 123373571 -702601 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1526 297 317 12 24 chr9 123373617 123373701 -702471 + B4A SINE B4 78 160 -132 7 1526 295 235 123 0 chr9 123373635 123373716 -702456 + B1F SINE Alu 9 99 -50 7 1526 1252 109 5 5 chr9 123375644 123375828 -700344 + B2_Mm2 SINE B2 2 185 -10 7 1526 668 267 60 0 chr9 123375841 123375991 -700181 + B3A SINE B2 2 160 -38 7 1526 216 0 0 0 chr9 123376011 123376035 -700137 + (CATA)n Simple_repeat Simple_repeat 3 26 0 7 1526 257 319 132 75 chr9 123376102 123376329 -699843 - MLT1J1 LTR MaLR -101 343 104 7 1526 380 130 14 0 chr9 123377107 123377176 -698996 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1526 183 291 12 60 chr9 123378061 123378145 -698027 + L3 LINE CR1 2157 2236 -2253 8 1526 368 328 12 28 chr9 123378240 123378403 -697769 - MLT1C LTR MaLR 0 467 239 8 1526 273 222 0 0 chr9 123378963 123379026 -697146 + CT-rich Low_complexity Low_complexity 4 66 0 8 1526 287 311 84 9 chr9 123379026 123379133 -697039 - PB1D9 SINE Alu -5 115 1 8 1526 295 158 105 0 chr9 123379149 123379206 -696966 - B1_Mm SINE Alu 0 147 85 8 1526 845 217 13 0 chr9 123379236 123379388 -696784 - B3 SINE B2 -61 155 2 8 1526 242 243 60 78 chr9 123379417 123379437 -696735 + MT2B LTR ERVL 150 167 -434 8 1526 427 224 133 0 chr9 123379437 123379535 -696637 + B1_Mur1 SINE Alu 1 111 -38 8 1526 283 325 87 8 chr9 123379535 123379563 -696609 + ID_B1 SINE B4 82 217 -7 8 1526 906 152 7 14 chr9 123379723 123379870 -696302 + B1_Mus1 SINE Alu 3 148 0 8 1526 519 69 0 0 chr9 123379873 123379945 -696227 + (GA)n Simple_repeat Simple_repeat 2 73 0 8 1526 324 0 0 0 chr9 123379943 123379979 -696193 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 8 1526 567 0 0 0 chr9 123379979 123380042 -696130 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 8 1526 1623 188 38 3 chr9 123381116 123381404 -694768 - MTC LTR MaLR -12 409 112 8 1526 623 144 9 0 chr9 123381438 123381549 -694623 + GA-rich Low_complexity Low_complexity 2 113 0 8 1526 697 119 0 0 chr9 123381568 123381669 -694503 - MTC LTR MaLR -320 101 1 8 1526 810 114 70 21 chr9 123381856 123381999 -694173 + B1_Mur4 SINE Alu 1 150 0 8 1526 788 215 195 0 chr9 123382163 123382368 -693804 - B4 SINE B4 -2 290 46 8 1526 1265 27 0 26 chr9 123383207 123383358 -692814 + B1_Mm SINE Alu 1 147 0 8 1526 214 64 62 21 chr9 123383358 123383406 -692766 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 8 1526 275 247 39 0 chr9 123383450 123383527 -692645 - ID4 SINE ID -1 82 3 8 1526 633 183 41 16 chr9 123383535 123383657 -692515 - B1F SINE Alu -7 142 18 8 1526 23 0 0 0 chr9 123383675 123383698 -692474 + AT_rich Low_complexity Low_complexity 1 23 0 8 1526 1226 55 0 0 chr9 123383706 123383852 -692320 + B1_Mus2 SINE Alu 2 147 0 8 1526 216 0 0 0 chr9 123383852 123383876 -692296 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1526 589 254 29 7 chr9 123383946 123384085 -692087 - ID_B1 SINE B4 -1 223 82 8 1526 236 332 110 81 chr9 123384636 123384944 -691228 + L2 LINE L2 1225 1541 -1878 8 1526 340 266 0 0 chr9 123385194 123385273 -690899 - ID4 SINE ID -3 80 2 8 1526 367 289 0 0 chr9 123385293 123385390 -690782 - B1F SINE Alu 0 149 53 8 1526 344 291 88 35 chr9 123385390 123385407 -690765 - ID_B1 SINE B4 0 224 105 8 1526 180 179 0 0 chr9 123385475 123385514 -690658 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 8 1526 293 289 70 30 chr9 123385526 123385626 -690546 - B3A SINE B2 -93 105 2 8 1526 469 267 0 0 chr9 123385542 123385628 -690544 - RSINE1 SINE B4 -79 86 1 8 1526 737 218 149 0 chr9 123385790 123385964 -690208 - B3 SINE B2 -15 201 2 8 1526 220 304 14 14 chr9 123386032 123386102 -690070 - B4A SINE B4 -206 86 17 8 1526 270 312 0 0 chr9 123386050 123386114 -690058 - ID4 SINE ID -15 68 5 8 1526 22 0 0 0 chr9 123386127 123386149 -690023 + AT_rich Low_complexity Low_complexity 1 22 0 8 1526 669 259 7 0 chr9 123386152 123386291 -689881 + B3A SINE B2 2 141 -57 8 1526 239 79 26 0 chr9 123386343 123386381 -689791 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1526 182 286 20 20 chr9 123386509 123386559 -689613 - MER5A DNA MER1_type -90 99 50 8 1526 549 271 101 97 chr9 123386782 123387019 -689153 + MER2 DNA MER2_type 2 239 -106 8 1526 193 247 96 24 chr9 123387287 123387370 -688802 - L2 LINE L2 -561 2858 2770 8 1526 553 58 19 28 chr9 123387675 123387781 -688391 + (CCCCG)n Simple_repeat Simple_repeat 4 108 0 8 1526 28 48 0 0 chr9 123387790 123387832 -688340 + GC_rich Low_complexity Low_complexity 1 42 0 8 1526 828 153 0 21 chr9 123389953 123390093 -686079 + B1_Mus1 SINE Alu 1 137 -11 8 1526 204 40 0 0 chr9 123390093 123390118 -686054 + (CAAAC)n Simple_repeat Simple_repeat 4 28 0 8 1526 207 0 0 0 chr9 123390119 123390142 -686030 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1526 267 292 56 9 chr9 123390297 123390404 -685768 + MER5A DNA MER1_type 3 114 -75 8 1526 663 13 0 0 chr9 123390769 123390845 -685327 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 1526 1146 223 5 0 chr9 123391159 123391374 -684798 - B3 SINE B2 0 216 1 8 1526 199 325 48 0 chr9 123391588 123391671 -684501 - L2a LINE L2 -1 3374 3288 8 1526 260 319 28 67 chr9 123391697 123391875 -684297 - L2a LINE L2 -185 3241 3071 8 1526 678 222 126 0 chr9 123392412 123392547 -683625 - RSINE1 SINE B4 -13 152 1 8 1526 583 285 126 10 chr9 123392829 123393123 -683049 - L1MA5 LINE L1 -108 6192 5865 8 1526 364 327 38 32 chr9 123393466 123393624 -682548 - LTR16A LTR ERVL -233 218 60 8 1526 208 286 75 30 chr9 123393768 123393894 -682278 - MIRc SINE MIR -126 142 9 8 1526 295 305 67 72 chr9 123394251 123394276 -681896 + YREP_Mm Unknown Unknown 146 237 -1575 8 1526 740 198 0 22 chr9 123394276 123394410 -681762 - ID_B1 SINE B4 0 224 94 8 1526 295 305 67 72 chr9 123394410 123394431 -681741 + YREP_Mm Unknown Unknown 238 324 -1488 8 1526 237 65 0 0 chr9 123394439 123394470 -681702 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8 1526 1281 57 0 0 chr9 123394471 123394629 -681543 - B2_Mm2 SINE B2 -37 158 1 8 1526 1796 151 28 0 chr9 123394939 123395224 -680948 - MERVL_2A-int LTR ERVL -1240 4521 4229 8 1526 379 77 0 37 chr9 123395229 123395283 -680889 - MT2B2 LTR ERVL 0 584 533 8 1526 210 37 0 0 chr9 123395300 123395327 -680845 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 8 1526 694 187 7 54 chr9 123395331 123395478 -680694 - ORR1A4 LTR MaLR -189 140 1 8 1526 759 170 8 47 chr9 123396673 123396805 -679367 - B1_Mur2 SINE Alu -1 148 24 8 1526 1017 162 136 0 chr9 123396805 123397003 -679169 - URR1A DNA MER1_type -1 225 1 8 1526 602 245 6 98 chr9 123397003 123397033 -679139 - B1F SINE Alu -123 26 1 8 1526 437 183 361 37 chr9 123397063 123397171 -679001 + PB1D7 SINE Alu 7 149 0 8 1526 610 308 0 27 chr9 123397215 123397365 -678807 + RSINE1 SINE B4 3 148 -17 8 1526 30 0 0 0 chr9 123397407 123397437 -678735 + AT_rich Low_complexity Low_complexity 1 30 0 8 1526 233 271 98 84 chr9 123397782 123398005 -678167 - MIRc SINE MIR -31 231 3 8 1526 351 0 0 0 chr9 123398105 123398144 -678028 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 1526 261 0 0 0 chr9 123398144 123398172 -678000 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1526 21 36 0 0 chr9 123398621 123398649 -677523 + AT_rich Low_complexity Low_complexity 1 28 0 8 1526 225 154 0 0 chr9 123399447 123399486 -676686 + (ATG)n Simple_repeat Simple_repeat 1 39 0 8 1526 207 100 0 0 chr9 123399483 123399513 -676659 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1526 296 264 110 0 chr9 123400526 123400617 -675555 + Charlie5 DNA MER1_type 2363 2463 -161 8 1526 405 244 24 0 chr9 123400618 123400700 -675472 + B1F SINE Alu 1 84 -65 8 1526 393 22 0 0 chr9 123400701 123400747 -675425 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1526 744 179 0 50 chr9 123401912 123402053 -674119 - B1_Mur3 SINE Alu -15 134 1 8 1526 300 319 206 12 chr9 123402061 123402226 -673946 - L1ME2 LINE L1 -5 6159 5963 8 1526 3026 158 8 26 chr9 123402245 123402779 -673393 - RLTR12B LTR ERVK -2 526 3 8 1526 762 183 54 84 chr9 123402805 123403008 -673164 - B3A SINE B2 -1 197 1 8 1526 257 262 22 101 chr9 123403108 123403145 -673027 - B4 SINE B4 -210 82 49 8 1526 1441 191 171 148 chr9 123403145 123403192 -672980 - MT2A LTR ERVL 0 533 490 8 1526 306 0 0 0 chr9 123403192 123403226 -672946 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 8 1526 1441 191 171 148 chr9 123403226 123403699 -672473 - MT2A LTR ERVL -44 489 2 8 1526 257 262 22 101 chr9 123403699 123403750 -672422 - B4 SINE B4 -244 48 1 8 1526 371 281 61 0 chr9 123403930 123404012 -672160 + B3A SINE B2 3 89 -109 8 1526 1677 31 0 0 chr9 123404190 123404383 -671789 + B2_Mm1a SINE B2 1 193 0 8 1526 493 330 68 72 chr9 123405011 123405289 -670883 + B4A SINE B4 15 291 -1 8 1526 303 209 193 76 chr9 123405416 123405535 -670637 - B3A SINE B2 -5 190 58 8 1526 1941 211 49 68 chr9 123405547 123405707 -670465 - RLTR12B LTR ERVK -15 553 383 8 1526 1001 190 31 126 chr9 123405707 123406063 -670109 - RLTRETN_Mm LTR ERVK 0 322 1 8 1526 1941 222 78 25 chr9 123406063 123406183 -669989 - RLTR12B LTR ERVK -146 382 260 8 1526 1059 65 245 0 chr9 123406183 123406338 -669834 - B2_Mm2 SINE B2 -1 194 2 8 1526 1941 222 78 25 chr9 123406338 123406572 -669600 - RLTR12B LTR ERVK -269 259 1 8 1526 235 241 17 0 chr9 123406573 123406631 -669541 - B3A SINE B2 -137 61 3 8 1526 1659 32 0 0 chr9 123406723 123406910 -669262 + B2_Mm1a SINE B2 1 187 -6 8 1526 749 132 16 0 chr9 123407685 123407814 -668358 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 8 1526 342 0 0 0 chr9 123407817 123407855 -668317 + (TTTCC)n Simple_repeat Simple_repeat 3 40 0 8 1526 797 183 14 0 chr9 123408415 123408557 -667615 + B1_Mur2 SINE Alu 5 148 -1 8 1526 556 114 13 0 chr9 123408580 123408659 -667513 + B1_Mur1 SINE Alu 42 121 -28 8 1526 23 33 0 0 chr9 123408751 123408781 -667391 + AT_rich Low_complexity Low_complexity 1 30 0 8 1526 758 216 0 7 chr9 123408782 123408922 -667250 + B1F SINE Alu 1 139 -10 8 1526 434 234 98 9 chr9 123409957 123410069 -666103 + B1_Mus2 SINE Alu 10 131 -16 8 1526 228 135 0 0 chr9 123410073 123410110 -666062 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 8 1526 938 224 59 5 chr9 123410364 123410566 -665606 + B3 SINE B2 2 214 -2 9 1526 213 216 0 0 chr9 123410736 123410803 -665369 + polypurine Low_complexity Low_complexity 1 67 0 9 1526 740 249 145 5 chr9 123410804 123410990 -665182 + ID_B1 SINE B4 10 221 -3 9 1526 29 0 0 0 chr9 123411020 123411049 -665123 + AT_rich Low_complexity Low_complexity 1 29 0 9 1526 949 198 108 23 chr9 123411056 123411315 -664857 - Lx9 LINE L1 -7 7637 7357 9 1526 707 280 105 50 chr9 123411449 123411772 -664400 - MLT1A0 LTR MaLR -15 350 10 9 1526 239 316 9 75 chr9 123411862 123411968 -664204 + MLT1A1 LTR MaLR 308 406 -2 9 1526 230 319 57 101 chr9 123413326 123413535 -662637 + MIRc SINE MIR 13 212 -56 9 1526 284 228 35 0 chr9 123414118 123414175 -661997 + ID4 SINE ID 6 64 -19 9 1526 454 273 87 43 chr9 123414493 123414677 -661495 + B3A SINE B2 3 198 0 9 1526 424 212 0 45 chr9 123415010 123415021 -661151 + ID_B1 SINE B4 139 219 -1 9 1526 425 216 0 0 chr9 123415021 123415095 -661077 + B1F SINE Alu 71 144 -5 9 1526 742 262 15 20 chr9 123416015 123416210 -659962 - B3 SINE B2 -6 210 17 9 1526 531 234 162 39 chr9 123416209 123416280 -659892 + RLTR15 LTR ERVK 25 103 -256 9 1526 297 100 0 0 chr9 123416280 123416330 -659842 + (CAGAGA)n Simple_repeat Simple_repeat 2 51 0 9 1526 531 234 162 39 chr9 123416330 123416542 -659630 + RLTR15 LTR ERVK 104 342 -17 9 1526 612 220 22 22 chr9 123417147 123417282 -658890 + B1_Mur1 SINE Alu 2 136 -13 9 1526 405 290 40 72 chr9 123417312 123417423 -658749 - PB1D10 SINE Alu 0 149 44 9 1526 2086 160 140 48 chr9 123417423 123417903 -658269 - RLTR11A2 LTR ERVK -3 524 1 9 1526 405 264 50 76 chr9 123417903 123417946 -658226 - PB1D10 SINE Alu -74 43 2 9 1526 294 250 36 0 chr9 123417957 123418041 -658131 - L1M5 LINE L1 -652 5472 5386 9 1526 255 61 0 0 chr9 123418129 123418162 -658010 + (TCC)n Simple_repeat Simple_repeat 1 33 0 9 1526 218 234 0 21 chr9 123418162 123418210 -657962 - B1F1 SINE Alu -90 59 13 9 1526 222 318 6 19 chr9 123418461 123418618 -657554 + T-rich Low_complexity Low_complexity 1 155 0 9 1526 261 290 15 8 chr9 123418626 123418733 -657439 + CT-rich Low_complexity Low_complexity 25 133 0 9 1526 611 26 0 13 chr9 123418733 123418811 -657361 + (TCTCC)n Simple_repeat Simple_repeat 2 78 0 9 1526 261 290 15 8 chr9 123418811 123418835 -657337 + polypyrimidine Low_complexity Low_complexity 1 24 0 9 1526 715 220 7 21 chr9 123418835 123418979 -657193 - B1_Mur3 SINE Alu -1 148 7 9 1526 442 237 16 81 chr9 123419362 123419486 -656686 - B1F1 SINE Alu -1 119 4 9 1526 234 0 0 0 chr9 123419902 123419928 -656244 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1526 327 49 0 0 chr9 123419965 123420006 -656166 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1526 276 337 19 29 chr9 123420007 123420111 -656061 - MER5A DNA MER1_type -44 145 43 9 1526 1050 108 0 20 chr9 123420940 123421091 -655081 + B1_Mus1 SINE Alu 1 148 0 9 1526 255 293 118 13 chr9 123421118 123421206 -654966 + ID4 SINE ID 2 97 -55 9 1526 244 224 27 95 chr9 123421405 123421479 -654693 + ID4 SINE ID 15 83 0 9 1526 901 136 20 26 chr9 123421889 123422023 -654149 + B1_Mur4 SINE Alu 1 137 -13 9 1526 197 65 32 0 chr9 123422023 123422054 -654118 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9 1526 901 136 20 26 chr9 123422054 123422070 -654102 + B1_Mur4 SINE Alu 138 150 0 9 1526 627 243 69 7 chr9 123422263 123422408 -653764 - ID_B1 SINE B4 -4 220 67 9 1526 744 244 63 63 chr9 123422408 123422631 -653541 - ID_B1 SINE B4 0 224 2 9 1526 1411 188 165 3 chr9 123422814 123423123 -653049 - ORR1D1 LTR MaLR -8 366 8 9 1526 720 77 26 0 chr9 123423123 123423240 -652932 + (CA)n Simple_repeat Simple_repeat 1 120 0 9 1526 1488 43 31 31 chr9 123423324 123423516 -652656 + B2_Mm1a SINE B2 2 193 0 9 1526 25 31 0 0 chr9 123423547 123423579 -652593 + AT_rich Low_complexity Low_complexity 1 32 0 9 1526 736 256 89 17 chr9 123423625 123423804 -652368 - B3A SINE B2 -3 195 4 9 1526 32 0 0 0 chr9 123424007 123424039 -652133 + AT_rich Low_complexity Low_complexity 1 32 0 9 1526 600 240 96 39 chr9 123424525 123424681 -651491 - MER5A DNA MER1_type -18 171 7 9 1526 494 174 12 58 chr9 123424755 123424926 -651246 + CT-rich Low_complexity Low_complexity 1 163 0 9 1526 448 231 12 24 chr9 123425000 123425164 -651008 + CT-rich Low_complexity Low_complexity 2 163 0 9 1526 189 0 0 0 chr9 123427417 123427438 -648734 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1526 520 121 72 0 chr9 123427802 123427885 -648287 + ID_B1 SINE B4 130 218 -6 9 1526 427 312 40 45 chr9 123427915 123428116 -648056 - MER33 DNA MER1_type -119 205 6 9 1526 200 81 0 75 chr9 123429814 123429854 -646318 + A-rich Low_complexity Low_complexity 1 37 0 9 1526 398 253 103 0 chr9 123431411 123431498 -644674 + B4 SINE B4 7 102 -190 9 1526 306 325 15 102 chr9 123431519 123431558 -644614 - MER63B DNA AcHobo -27 409 369 9 1526 2536 68 3 58 chr9 123431558 123431904 -644268 - ORR1A2 LTR MaLR 0 327 1 9 1526 1367 70 54 0 chr9 123431904 123432089 -644083 + B2_Mm2 SINE B2 1 195 0 9 1526 306 325 15 102 chr9 123432089 123432185 -643987 - MER63B DNA AcHobo -68 368 286 9 1526 212 86 29 0 chr9 123432190 123432225 -643947 + (CAT)n Simple_repeat Simple_repeat 2 37 0 9 1526 945 285 49 26 chr9 123432718 123433024 -643148 - ORR1E LTR MaLR -6 353 41 9 1526 689 269 75 5 chr9 123433070 123433257 -642915 - MLT1D LTR MaLR -301 204 5 9 1526 498 222 45 18 chr9 123433837 123433947 -642225 + B4 SINE B4 2 114 -178 9 1526 294 338 0 0 chr9 123434013 123434167 -642005 + (CA)n Simple_repeat Simple_repeat 1 154 0 9 1526 321 192 84 60 chr9 123434424 123434507 -641665 + B2_Mm2 SINE B2 81 165 -30 9 1526 1095 171 83 69 chr9 123434758 123435047 -641125 + RMER4A LTR ERVK 1 293 -173 9 1526 431 156 10 68 chr9 123435047 123435150 -641022 + RMER4A LTR ERVK 249 345 -240 9 1526 3060 202 142 115 chr9 123435152 123435270 -640902 - RMER19B LTR ERVK -7 895 788 9 1526 1184 62 0 0 chr9 123435270 123435416 -640756 + B1_Mus1 SINE Alu 3 148 0 9 1526 3060 202 142 115 chr9 123435416 123436168 -640004 - RMER19B LTR ERVK -115 787 1 9 1526 954 109 246 16 chr9 123436168 123436355 -639817 + RMER4A LTR ERVK 335 564 -21 9 1526 190 253 66 13 chr9 123436363 123436439 -639733 + MIR SINE MIR 136 215 -47 9 1526 472 211 167 20 chr9 123436659 123436809 -639363 + B3A SINE B2 27 198 0 9 1526 227 302 151 25 chr9 123437071 123437190 -638982 + L1M5 LINE L1 5482 5615 -509 9 1526 801 167 29 0 chr9 123437563 123437701 -638471 + B1_Mus1 SINE Alu 1 142 -6 9 1526 678 0 0 0 chr9 123438542 123438615 -637557 - tRNA-Arg-CGY_ tRNA tRNA -3 73 1 9 1526 189 297 53 26 chr9 123440357 123440433 -635739 + MIR SINE MIR 90 167 -95 9 1526 634 147 105 30 chr9 123440845 123440978 -635194 + B1_Mur4 SINE Alu 2 144 -6 9 1526 212 314 97 49 chr9 123441365 123441509 -634663 + MIRb SINE MIR 14 164 -104 9 1526 198 0 0 0 chr9 123442097 123442119 -634053 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1526 348 297 54 9 chr9 123442722 123442834 -633338 - PB1D10 SINE Alu 0 117 1 9 1526 562 262 40 165 chr9 123442985 123443209 -632963 + RMER30 DNA MER1_type 5 200 -2 9 1526 779 225 7 0 chr9 123443302 123443453 -632719 + B3A SINE B2 2 153 -45 9 1526 267 54 0 0 chr9 123443499 123443536 -632636 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1526 348 24 0 0 chr9 123443536 123443577 -632595 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1526 246 331 96 51 chr9 123443927 123444083 -632089 - ID_B1 SINE B4 -11 213 51 9 1526 479 189 7 135 chr9 123444044 123444072 -632100 + MT2B LTR ERVL 142 151 -450 9 1526 971 120 0 7 chr9 123444072 123444215 -631957 + B1_Mus2 SINE Alu 1 142 -5 9 1526 751 222 65 25 chr9 123444804 123445049 -631123 - L1MB3 LINE L1 -136 6047 5793 9 1526 293 293 0 13 chr9 123445260 123445336 -630836 + ID_B1 SINE B4 93 167 -57 9 1526 286 300 37 65 chr9 123445336 123445367 -630805 + PB1D10 SINE Alu 12 115 -2 9 1526 540 277 80 92 chr9 123445413 123445524 -630648 - L1MB3 LINE L1 -388 5783 5667 9 1526 186 43 0 0 chr9 123445524 123445547 -630625 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 9 1526 931 169 0 0 chr9 123445550 123445698 -630474 - B1_Mus1 SINE Alu 0 148 1 9 1526 540 277 80 92 chr9 123445698 123445740 -630432 - L1MB3 LINE L1 -505 5666 5634 9 1526 652 151 87 0 chr9 123445740 123445866 -630306 + B1_Mur2 SINE Alu 2 138 -11 9 1526 261 57 0 0 chr9 123445866 123445901 -630271 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1526 540 277 80 92 chr9 123445901 123446079 -630093 - L1MB3 LINE L1 -538 5633 5451 9 1526 197 132 0 26 chr9 123446796 123446835 -629337 + GA-rich Low_complexity Low_complexity 4 41 0 9 1526 972 143 7 0 chr9 123447775 123447922 -628250 - B1_Mur1 SINE Alu 0 149 2 9 1526 219 179 18 0 chr9 123448541 123448597 -627575 + (TTTG)n Simple_repeat Simple_repeat 3 59 0 9 1526 294 197 0 29 chr9 123448893 123448961 -627211 - MLT1E2 LTR MaLR 0 627 562 9 1526 1676 221 95 3 chr9 123448969 123449337 -626835 + MTD LTR MaLR 4 405 -14 9 1526 583 354 79 27 chr9 123449366 123449735 -626437 - MLT1E2 LTR MaLR -148 479 92 9 1526 21 57 0 0 chr9 123450011 123450046 -626126 + AT_rich Low_complexity Low_complexity 1 35 0 9 1526 502 211 44 0 chr9 123450081 123450171 -626001 - B3 SINE B2 -86 130 37 9 1526 884 113 91 7 chr9 123450184 123450327 -625845 - MTC LTR MaLR -266 155 1 9 1526 216 273 18 0 chr9 123451217 123451272 -624900 - B4 SINE B4 -235 57 2 9 1526 691 234 21 0 chr9 123451725 123451866 -624306 - B1F1 SINE Alu -3 146 3 9 1526 1183 68 0 0 chr9 123452304 123452451 -623721 - B1_Mus2 SINE Alu 0 147 1 9 1526 1273 89 56 0 chr9 123452507 123452686 -623486 - B2_Mm2 SINE B2 -5 190 2 9 1526 851 167 27 20 chr9 123452733 123452880 -623292 - B1_Mur3 SINE Alu -1 148 1 9 1526 629 250 8 0 chr9 123452882 123453010 -623162 + B1_Mur1 SINE Alu 14 142 -7 1 1526 967 283 119 36 chr9 123453000 123453444 -622728 - RLTR12B LTR ERVK -47 481 1 1 1526 231 26 0 0 chr9 123454953 123454992 -621180 - L1_Mus1 LINE L1 0 6567 6529 1 1526 3379 57 9 2 chr9 123454992 123455447 -620725 - L1_Mus3 LINE L1 -20 6618 6161 1 1526 2729 62 3 5 chr9 123455446 123455816 -620356 + L1_Mus3 LINE L1 5880 6248 -390 1 1526 928 170 0 0 chr9 123456434 123456581 -619591 - B1_Mur3 SINE Alu -1 148 2 1 1526 576 229 49 0 chr9 123456693 123456815 -619357 - B1F2 SINE Alu -3 146 19 1 1526 861 94 0 0 chr9 123456873 123456990 -619182 - B1_Mm SINE Alu 0 147 31 1 1526 23 0 0 0 chr9 123457016 123457039 -619133 + AT_rich Low_complexity Low_complexity 1 23 0 1 1526 219 352 49 0 chr9 123457048 123457154 -619018 - L2b LINE L2 -40 3347 3208 1 1526 241 298 34 0 chr9 123457243 123457308 -618864 + ID4 SINE ID 2 68 -15 1 1526 342 210 0 36 chr9 123457852 123457936 -618236 - ID4 SINE ID -2 81 1 1 1526 647 151 67 8 chr9 123458263 123458383 -617789 + B3 SINE B2 1 127 -89 1 1526 902 163 0 7 chr9 123458562 123458710 -617462 + B1_Mus1 SINE Alu 2 148 0 1 1526 598 255 152 29 chr9 123459049 123459489 -616683 + Tigger6b DNA MER2_type 996 1384 -213 1 1526 334 309 99 9 chr9 123459496 123459516 -616656 + ID_B1 SINE B4 67 187 -37 1 1526 369 222 154 11 chr9 123459516 123459607 -616565 + B1F1 SINE Alu 6 109 -40 1 1526 1179 198 31 28 chr9 123459676 123459931 -616241 - RLTR19B LTR ERVK 0 715 460 1 1526 996 101 7 7 chr9 123459927 123460077 -616095 - RLTR19C LTR ERVK -356 150 1 1 1526 787 177 14 0 chr9 123460105 123460246 -615926 - B1_Mur4 SINE Alu -7 143 1 1 1526 321 120 379 32 chr9 123460271 123460366 -615806 - B2_Mm2 SINE B2 -19 176 49 1 1526 769 118 9 0 chr9 123460435 123460545 -615627 - B2_Mm1t SINE B2 -82 111 1 1 1526 1152 228 5 0 chr9 123460565 123460780 -615392 - B3 SINE B2 0 216 1 1 1526 627 123 226 0 chr9 123460883 123460989 -615183 + B1_Mus2 SINE Alu 6 135 -12 1 1526 606 277 123 68 chr9 123461168 123461464 -614708 - B4 SINE B4 -18 274 2 1 1526 542 196 108 0 chr9 123461588 123461690 -614482 - B1_Mur1 SINE Alu -22 127 15 1 1526 21 0 0 0 chr9 123462001 123462022 -614150 + AT_rich Low_complexity Low_complexity 1 21 0 1 1526 251 258 45 0 chr9 123462044 123462110 -614062 - ID4_ SINE ID -13 70 2 1 1526 443 211 13 0 chr9 123462379 123462455 -613717 - ID4_ SINE ID -6 77 1 1 1526 449 213 73 18 chr9 123462774 123462884 -613288 - ID_B1 SINE B4 -16 208 93 1 1526 1139 75 0 0 chr9 123463013 123463160 -613012 - B1_Mus2 SINE Alu 0 147 1 1 1526 269 333 13 0 chr9 123463200 123463275 -612897 - ID4_ SINE ID -6 77 2 1 1526 2555 97 71 42 chr9 123463663 123464071 -612101 - RLTR9B2 LTR ERVK 0 420 1 1 1526 708 221 20 27 chr9 123464360 123464509 -611663 - B1_Mur2 SINE Alu 0 149 2 1 1526 338 296 83 73 chr9 123464761 123464965 -611207 - Tigger13a DNA MER2_type -372 399 194 1 1526 2131 106 18 59 chr9 123465358 123465699 -610473 - ORR1A4 LTR MaLR -2 327 1 1 1526 10220 125 50 102 chr9 123465699 123467770 -608402 - ORR1A4-int LTR MaLR 0 1963 1 1 1526 1664 141 81 64 chr9 123467774 123468106 -608066 - ORR1A4 LTR MaLR -8 321 1 1 1526 699 168 182 0 chr9 123469212 123469349 -606823 - RMER5 LTR ERV1 -75 459 298 1 1526 183 100 0 0 chr9 123469479 123469509 -606663 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 1526 583 215 92 0 chr9 123469509 123469639 -606533 - B1_Mur4 SINE Alu -8 142 1 1 1527 384 22 0 0 chr9 123470480 123470525 -605647 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 1 1527 804 170 0 70 chr9 123470544 123470702 -605470 - B1_Mus1 SINE Alu 0 148 2 1 1527 211 104 20 20 chr9 123470707 123470756 -605416 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1527 340 255 84 84 chr9 123470934 123471088 -605084 - HAL1-3A_ME LINE L1 -420 2438 2285 1 1527 180 152 0 0 chr9 123471112 123471145 -605027 + C-rich Low_complexity Low_complexity 4 36 0 1 1527 575 211 0 0 chr9 123471154 123471258 -604914 - ID_B1 SINE B4 -19 205 102 1 1527 200 333 171 18 chr9 123471745 123472078 -604094 - L2 LINE L2 -690 2729 2346 1 1527 525 342 6 18 chr9 123472087 123472251 -603921 - RSINE1 SINE B4 0 165 4 1 1527 395 65 0 31 chr9 123472300 123472364 -603808 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1 1527 589 226 121 28 chr9 123472376 123472517 -603655 - RSINE1 SINE B4 -9 156 3 1 1527 192 270 0 60 chr9 123472518 123472585 -603587 - L2 LINE L2 -1095 2324 2262 1 1527 211 203 43 14 chr9 123472744 123472814 -603358 - L2 LINE L2 -1250 2169 2098 1 1527 182 205 0 102 chr9 123472866 123472915 -603257 + L3 LINE CR1 57 100 -4389 1 1527 186 43 0 0 chr9 123473247 123473270 -602902 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1527 283 130 56 0 chr9 123473954 123474008 -602164 - B2_Mm2 SINE B2 -9 186 130 1 1527 308 274 56 96 chr9 123474028 123474153 -602019 + L1M5 LINE L1 5669 5788 -376 1 1527 218 347 52 10 chr9 123474161 123474257 -601915 + PB1D9 SINE Alu 12 111 -9 1 1527 241 264 0 0 chr9 123474577 123474649 -601523 - L1MB4 LINE L1 -2 6178 6107 1 1527 485 275 148 0 chr9 123474677 123474826 -601346 - ID_B1 SINE B4 -31 193 23 1 1527 242 109 0 42 chr9 123474941 123474989 -601183 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1 1527 22 35 0 0 chr9 123476295 123476324 -599848 + AT_rich Low_complexity Low_complexity 1 29 0 1 1527 673 233 13 33 chr9 123476399 123476550 -599622 - B1_Mur3 SINE Alu -1 148 1 1 1527 1715 147 52 106 chr9 123476826 123477214 -598958 - ORR1B2 LTR MaLR 0 367 1 1 1527 544 292 0 15 chr9 123478259 123478391 -597781 - ID_B1 SINE B4 -8 216 87 1 1527 291 54 0 0 chr9 123478864 123478901 -597271 + (TATG)n Simple_repeat Simple_repeat 2 38 0 1 1527 23 68 0 0 chr9 123479552 123479596 -596576 + AT_rich Low_complexity Low_complexity 1 44 0 1 1527 31 44 0 0 chr9 123479714 123479759 -596413 + AT_rich Low_complexity Low_complexity 1 45 0 1 1527 594 239 74 5 chr9 123479825 123480027 -596145 - L1MB4 LINE L1 -252 5928 5713 1 1527 16867 57 2 5 chr9 123480087 123481363 -594809 - L1_Mus1 LINE L1 0 6567 5303 1 1527 1621 37 0 0 chr9 123481363 123481551 -594621 - B2_Mm1t SINE B2 -5 188 1 1 1527 16867 85 6 12 chr9 123481551 123482266 -593906 - L1_Mus1 LINE L1 -581 5302 4605 1 1527 2004 48 59 7 chr9 123482266 123482537 -593635 - L1Md_F2 LINE L1 0 6582 6298 1 1527 16867 85 6 12 chr9 123482537 123483736 -592436 - L1_Mus1 LINE L1 -1279 4604 3395 1 1527 353 207 120 72 chr9 123483735 123483860 -592312 - L1MB4 LINE L1 -2568 4173 4043 1 1527 398 303 9 0 chr9 123483888 123483997 -592175 - PB1D7 SINE Alu -10 110 1 1 1527 21 36 0 0 chr9 123483997 123484025 -592147 + AT_rich Low_complexity Low_complexity 1 28 0 1 1527 756 192 110 98 chr9 123484025 123484279 -591893 - Lx5 LINE L1 -3 7047 6791 1 1527 780 247 48 48 chr9 123484337 123484771 -591401 - L1MB4 LINE L1 -2684 4063 3630 1 1527 562 233 90 3 chr9 123484791 123484939 -591233 - B3 SINE B2 0 198 46 1 1527 394 236 78 11 chr9 123484899 123484989 -591183 - PB1D9 SINE Alu -24 96 1 1 1527 405 234 136 59 chr9 123485069 123485341 -590831 - L1MB4 LINE L1 -5366 1241 949 1 1527 303 341 85 24 chr9 123485343 123485671 -590501 - L1MB4 LINE L1 -5765 842 495 1 1527 344 226 92 25 chr9 123485896 123486059 -590113 - L1MB4 LINE L1 -6431 176 3 1 1527 227 31 31 0 chr9 123486268 123486300 -589872 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1527 363 296 0 39 chr9 123486321 123486423 -589749 - B3A SINE B2 -99 99 2 1 1527 681 269 32 0 chr9 123486618 123486774 -589398 - B3 SINE B2 -55 161 1 1 1527 29 28 0 0 chr9 123487781 123487817 -588355 + AT_rich Low_complexity Low_complexity 1 36 0 1 1527 342 107 0 0 chr9 123487846 123487902 -588270 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1527 288 276 140 95 chr9 123489066 123489150 -587022 + ID_B1 SINE B4 3 185 -39 1 1527 544 170 142 0 chr9 123489150 123489256 -586916 + B1_Mur4 SINE Alu 5 125 -25 1 1527 1312 83 22 0 chr9 123489279 123489460 -586712 - B2_Mm2 SINE B2 -9 186 2 1 1527 2457 143 42 37 chr9 123489526 123489983 -586189 - RMER6B LTR ERVK -2 459 1 1 1527 181 296 0 0 chr9 123490243 123490287 -585885 + MIRb SINE MIR 130 173 -95 1 1527 405 283 47 0 chr9 123491844 123491950 -584222 - MTE2a LTR MaLR -1 378 268 1 1527 1160 239 44 11 chr9 123491965 123492240 -583932 - RMER15 LTR ERVL -18 557 274 1 1527 444 217 102 62 chr9 123492268 123492396 -583776 - RMER15 LTR ERVL -442 133 1 1 1527 516 260 49 130 chr9 123492511 123492766 -583406 - MTE2a LTR MaLR -153 268 7 1 1527 466 260 37 16 chr9 123492909 123493053 -583119 - PB1D10 SINE Alu -4 146 6 1 1527 359 263 200 21 chr9 123493091 123493231 -582941 + ID_B1 SINE B4 4 168 -56 1 1527 225 0 0 0 chr9 123493231 123493256 -582916 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 1527 924 287 96 0 chr9 123495002 123495284 -580888 + MER2 DNA MER2_type 2 310 -35 1 1527 270 0 0 0 chr9 123495870 123495900 -580272 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1527 1433 50 39 0 chr9 123495900 123496082 -580090 - B2_Mm2 SINE B2 -5 190 2 1 1527 399 343 13 62 chr9 123496715 123496770 -579402 - ID_B1 SINE B4 -24 268 107 1 1527 626 273 7 14 chr9 123496770 123496911 -579261 - B1_Mur1 SINE Alu -9 140 1 1 1527 501 308 53 8 chr9 123497218 123497349 -578823 - RSINE1 SINE B4 -28 137 1 1 1527 315 304 75 91 chr9 123497472 123497503 -578669 - B3A SINE B2 -2 196 1 1 1527 600 264 24 54 chr9 123497503 123497671 -578501 - RSINE1 SINE B4 -1 164 2 1 1527 270 164 51 64 chr9 123497693 123497771 -578401 - B1_Mur3 SINE Alu 0 149 73 1 1527 298 255 123 0 chr9 123498196 123498302 -577870 - MER58C DNA MER1_type -5 210 92 1 1527 1781 179 70 30 chr9 123498666 123499069 -577103 + MTD LTR MaLR 1 419 0 1 1527 22 0 0 0 chr9 123500357 123500379 -575793 + AT_rich Low_complexity Low_complexity 1 22 0 1 1527 198 0 0 0 chr9 123502773 123502795 -573377 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1527 1212 48 7 0 chr9 123502795 123502941 -573231 - B1_Mm SINE Alu 0 147 1 3 1527 228 196 391 27 chr9 123503189 123503299 -572873 + L1M2 LINE L1 2342 2491 -4358 4 1527 336 254 57 50 chr9 123503446 123503587 -572585 + B1F1 SINE Alu 3 144 -5 5 1527 884 103 57 29 chr9 123503768 123503908 -572264 + B1_Mus1 SINE Alu 5 148 0 6 1527 380 326 112 71 chr9 123504346 123504686 -571486 + ORR1E LTR MaLR 1 354 -5 7 1527 203 282 192 0 chr9 123505864 123505942 -570230 + MER5A DNA MER1_type 2 94 -95 8 1527 324 0 0 0 chr9 123507883 123507919 -568253 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1527 368 213 13 0 chr9 123508489 123508564 -567608 + MLT1B LTR MaLR 299 374 -16 1 1527 265 29 0 0 chr9 123508842 123508877 -567295 + B3 SINE B2 2 36 -180 1 1527 219 191 24 0 chr9 123508881 123508923 -567249 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 1 1527 1268 34 0 0 chr9 123509867 123510014 -566158 + B1_Mus2 SINE Alu 1 147 0 1 1527 207 0 0 0 chr9 123510026 123510049 -566123 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1527 361 272 58 0 chr9 123510312 123510415 -565757 + PB1D10 SINE Alu 1 109 -8 1 1527 1045 212 171 12 chr9 123510461 123511018 -565154 + L1_Rod LINE L1 2293 2948 -3192 1 1527 1067 204 109 4 chr9 123511095 123511351 -564821 - ORR1D1 LTR MaLR 0 374 92 1 1527 2197 190 17 32 chr9 123511353 123511825 -564347 - ORR1D1-int LTR MaLR -904 466 2 1 1527 817 200 24 0 chr9 123511842 123512007 -564165 - ORR1D1 LTR MaLR -35 339 171 1 1527 272 180 0 0 chr9 123512007 123512057 -564115 - ORR1D1 LTR MaLR -330 54 5 1 1527 802 192 43 27 chr9 123512306 123512493 -563679 + ORR1D1 LTR MaLR 24 213 -161 1 1527 270 0 0 0 chr9 123512495 123512525 -563647 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1527 592 207 0 26 chr9 123514554 123514668 -561504 + B3 SINE B2 1 111 -105 2 1527 401 266 15 30 chr9 123515428 123515560 -560612 + RMER15 LTR ERVL 1 130 -445 2 1527 415 314 178 17 chr9 123515588 123515818 -560354 + RMER15 LTR ERVL 309 575 0 2 1527 1100 221 68 26 chr9 123517517 123517782 -558390 - MTD LTR MaLR -21 398 123 2 1527 380 254 17 26 chr9 123517907 123518024 -558148 - MTD LTR MaLR -303 116 1 2 1527 562 151 11 0 chr9 123519042 123519135 -557037 + B3 SINE B2 1 94 -122 2 1527 1258 189 107 1 chr9 123519716 123519993 -556179 - ORR1C1 LTR MaLR 0 421 67 2 1527 586 216 0 81 chr9 123521673 123521809 -554363 - RSINE1 SINE B4 -39 126 2 2 1527 2894 205 69 30 chr9 123522487 123523302 -552870 - RLTR22_Mur LTR ERVK -178 1670 804 2 1527 36552 62 2 3 chr9 123523302 123529454 -546718 - L1Md_F2 LINE L1 -59 6526 288 2 1527 3221 183 152 27 chr9 123529563 123530458 -545714 - RLTR22_Mur LTR ERVK -841 1007 1 2 1527 1216 222 220 8 chr9 123531036 123531395 -544777 + MT2A LTR ERVL 1 435 -98 2 1527 378 0 0 0 chr9 123531411 123531453 -544719 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1527 703 232 25 142 chr9 123533469 123533786 -542386 + RLTR11A2 LTR ERVK 1 280 -173 3 1527 434 274 12 78 chr9 123533843 123534009 -542163 + RLTR11A2 LTR ERVK 284 438 -15 3 1527 482 192 41 2 chr9 123534632 123534754 -541418 + B1_Mur3 SINE Alu 25 149 0 3 1527 185 59 0 56 chr9 123534859 123534895 -541277 + (TTTTTA)n Simple_repeat Simple_repeat 1 34 0 3 1527 1648 152 8 11 chr9 123534914 123535181 -540991 + L1VL1 LINE L1 1 266 -6156 3 1527 2479 122 79 0 chr9 123535181 123535574 -540598 + L1Md_F LINE L1 383 806 -5713 3 1527 6421 69 14 1 chr9 123535571 123536401 -539771 + L1Md_F2 LINE L1 4746 5586 -297 3 1527 8044 51 8 14 chr9 123536401 123537403 -538769 + L1Md_F2 LINE L1 5587 6582 0 3 1527 633 221 0 137 chr9 123538214 123538382 -537790 - B1_Mm SINE Alu -1 146 2 3 1527 387 0 0 0 chr9 123540007 123540050 -536122 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1527 341 339 8 8 chr9 123541801 123541923 -534249 - MER63B DNA AcHobo -2 434 313 3 1527 216 289 0 13 chr9 123542574 123542651 -533521 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 1527 324 216 95 0 chr9 123542651 123542725 -533447 - B3 SINE B2 -102 114 34 4 1527 266 294 65 56 chr9 123542777 123542885 -533287 - PB1D10 SINE Alu -8 109 1 4 1527 280 150 52 99 chr9 123542906 123543012 -533160 - L1_Rod LINE L1 -3384 2762 2657 4 1527 30 27 0 0 chr9 123543159 123543196 -532976 + AT_rich Low_complexity Low_complexity 1 37 0 4 1527 379 302 56 19 chr9 123543364 123543526 -532646 + Tigger5 DNA MER2_type 2 169 -2237 4 1527 286 316 20 0 chr9 123543574 123543672 -532500 + Tigger5 DNA MER2_type 2300 2399 -7 4 1527 252 319 25 58 chr9 123543749 123543869 -532303 + RMER4B LTR ERVK 10 125 -460 4 1527 243 0 0 0 chr9 123543909 123543936 -532236 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1527 305 260 204 8 chr9 123544297 123544429 -531743 - MER5B DNA MER1_type -4 174 17 4 1527 455 319 10 60 chr9 123544850 123545050 -531122 - B3A SINE B2 -7 191 2 4 1527 196 280 160 11 chr9 123548938 123549032 -527140 + MER5A DNA MER1_type 71 178 -11 4 1527 201 39 0 0 chr9 123549110 123549136 -527036 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 1527 285 29 0 0 chr9 123549170 123549204 -526968 + (TCTCC)n Simple_repeat Simple_repeat 2 35 0 5 1527 538 187 150 31 chr9 123549204 123549331 -526841 - B1_Mus2 SINE Alu -5 142 1 5 1527 674 204 0 35 chr9 123551163 123551305 -524867 - B1_Mur3 SINE Alu -1 148 12 5 1527 35 24 0 0 chr9 123551386 123551428 -524744 + AT_rich Low_complexity Low_complexity 1 42 0 5 1527 448 241 7 116 chr9 123551470 123551625 -524547 + MTEa LTR MaLR 242 379 0 5 1527 346 291 43 37 chr9 123551640 123551804 -524368 + MER97c DNA MER1_type? 11 175 -915 5 1527 445 259 277 0 chr9 123552054 123552278 -523894 + MER57C2 LTR ERV1 12 297 -137 5 1527 553 228 0 0 chr9 123552294 123552395 -523777 - B3 SINE B2 -114 102 2 5 1527 1902 151 100 9 chr9 123552552 123552893 -523279 - ORR1D1 LTR MaLR 0 374 3 5 1527 6457 190 46 17 chr9 123552899 123554230 -521942 - ORR1D1-int LTR MaLR 0 1370 2 5 1527 1955 187 13 29 chr9 123554231 123554611 -521561 - ORR1D1 LTR MaLR 0 374 1 5 1527 359 319 90 45 chr9 123554681 123554970 -521202 + L1MEg LINE L1 958 1259 -4825 6 1527 405 272 30 60 chr9 123554973 123555141 -521031 + RSINE1 SINE B4 3 165 0 6 1527 276 292 0 0 chr9 123555159 123555231 -520941 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1527 1866 139 16 9 chr9 123555278 123555597 -520575 - ORR1A4 LTR MaLR -8 321 1 6 1527 1101 211 30 0 chr9 123555716 123555915 -520257 + B3 SINE B2 5 209 -7 6 1527 21 0 0 0 chr9 123555944 123555965 -520207 + AT_rich Low_complexity Low_complexity 1 21 0 6 1527 950 119 8 0 chr9 123555971 123556105 -520067 + B1_Mus1 SINE Alu 2 136 -12 6 1527 729 90 0 0 chr9 123556106 123556217 -519955 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 6 1527 452 32 0 16 chr9 123556320 123556383 -519789 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1527 517 298 6 79 chr9 123556383 123556547 -519625 - B3 SINE B2 -64 152 1 6 1527 317 273 39 0 chr9 123556763 123556840 -519332 + ID_B1 SINE B4 81 160 -64 7 1527 309 242 103 48 chr9 123556878 123557043 -519129 + L1MEg LINE L1 1715 1888 -4120 6 1527 666 103 0 0 chr9 123557282 123557379 -518793 + MTC LTR MaLR 5 101 -320 7 1527 7777 76 7 0 chr9 123557379 123558913 -517259 + L1_Mus2 LINE L1 4989 6533 -33 7 1527 1470 212 50 41 chr9 123558913 123559277 -516895 + MTC LTR MaLR 55 421 0 7 1527 869 35 0 0 chr9 123559654 123559768 -516404 + L1Md_A LINE L1 6469 6582 0 7 1527 192 77 0 0 chr9 123559786 123559812 -516360 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1527 189 0 0 0 chr9 123560295 123560316 -515856 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 7 1527 643 207 99 17 chr9 123560852 123561024 -515148 - B3 SINE B2 -10 206 21 7 1527 21 0 0 0 chr9 123561150 123561171 -515001 + AT_rich Low_complexity Low_complexity 1 21 0 7 1527 601 127 166 21 chr9 123561748 123561806 -514366 + Lx2A1 LINE L1 6843 6910 -98 7 1527 180 0 0 0 chr9 123561806 123561826 -514346 + (TGG)n Simple_repeat Simple_repeat 2 21 0 7 1527 601 127 166 21 chr9 123561826 123561912 -514260 + Lx2A1 LINE L1 6911 7007 -1 7 1527 1333 248 196 30 chr9 123562206 123562773 -513399 - L1M2 LINE L1 -948 5195 4534 8 1527 1801 148 19 135 chr9 123562773 123563194 -512978 + ORR1D1 LTR MaLR 3 374 0 8 1527 1333 249 89 36 chr9 123563194 123563300 -512872 - L1M2 LINE L1 -1610 4533 4422 8 1527 2405 150 51 36 chr9 123563431 123563846 -512326 + MTC LTR MaLR 1 421 0 8 1527 395 240 20 16 chr9 123564679 123564795 -511377 - B1_Mur1 SINE Alu -1 148 7 8 1527 195 238 119 60 chr9 123565619 123565753 -510419 - MIR3 SINE MIR -49 159 18 8 1527 232 283 39 29 chr9 123566973 123567075 -509097 - L4 LINE RTE -192 1837 1735 8 1527 262 200 125 0 chr9 123568519 123568599 -507573 + MIRc SINE MIR 35 124 -144 8 1527 585 231 13 26 chr9 123568824 123568975 -507197 + B1F1 SINE Alu 1 149 0 8 1527 862 189 189 0 chr9 123569933 123570113 -506059 + B3 SINE B2 3 216 0 8 1527 1506 78 10 0 chr9 123571122 123571315 -504857 + B2_Mm2 SINE B2 1 195 0 8 1527 950 141 0 32 chr9 123571340 123571494 -504678 + B1_Mur4 SINE Alu 2 150 0 9 1527 486 175 40 0 chr9 123571503 123571629 -504543 + GA-rich Low_complexity Low_complexity 3 133 0 9 1527 195 42 0 0 chr9 123572361 123572385 -503787 + (TA)n Simple_repeat Simple_repeat 1 24 0 9 1527 214 216 318 0 chr9 123572386 123572474 -503698 - MIRb SINE MIR -35 233 118 9 1527 294 98 0 0 chr9 123574061 123574112 -502060 + (CCAA)n Simple_repeat Simple_repeat 4 54 0 9 1527 376 299 125 32 chr9 123574450 123574761 -501411 + L1MC LINE L1 4907 5246 -900 9 1527 257 257 27 13 chr9 123575081 123575156 -501016 - MLT1A1 LTR MaLR -298 110 35 9 1527 324 294 37 0 chr9 123575414 123575523 -500649 + MLT1H1 LTR MaLR 3 115 -440 9 1527 378 0 0 0 chr9 123575523 123575565 -500607 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1527 180 0 0 0 chr9 123575978 123575998 -500174 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 1527 272 290 68 8 chr9 123576103 123576235 -499937 - L1MC4 LINE L1 -625 7417 7278 1 1527 254 200 163 82 chr9 123576235 123576333 -499839 - PB1D7 SINE Alu 0 120 15 1 1527 273 192 19 0 chr9 123577100 123577152 -499020 + RSINE1 SINE B4 4 56 -109 1 1527 423 266 0 0 chr9 123577197 123577291 -498881 + RSINE1 SINE B4 37 130 -35 1 1527 867 125 0 0 chr9 123577611 123577739 -498433 + B1_Mur4 SINE Alu 22 149 -1 1 1527 701 158 79 7 chr9 123578296 123578436 -497736 + B1_Mur4 SINE Alu 1 150 0 1 1527 348 24 0 0 chr9 123578451 123578492 -497680 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 1527 1803 73 4 43 chr9 123578553 123578811 -497361 - L1_Mus2 LINE L1 0 6566 6319 1 1527 1186 95 0 0 chr9 123578813 123578982 -497190 - B2_Mm2 SINE B2 -26 169 1 1 1527 594 232 105 41 chr9 123579360 123579522 -496650 + MTEb LTR MaLR 7 179 -200 1 1527 863 267 58 27 chr9 123579522 123579745 -496427 + B4A SINE B4 1 230 -62 1 1527 916 226 0 0 chr9 123579746 123579923 -496249 + B3 SINE B2 2 178 -38 1 1527 24 32 0 0 chr9 123579931 123579962 -496210 + AT_rich Low_complexity Low_complexity 1 31 0 1 1527 1140 55 14 0 chr9 123579962 123580100 -496072 + B1_Mus1 SINE Alu 1 140 -8 1 1527 309 51 0 0 chr9 123580100 123580139 -496033 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1527 453 235 0 0 chr9 123580232 123580364 -495808 + (TG)n Simple_repeat Simple_repeat 1 132 0 1 1527 567 207 33 0 chr9 123580411 123580532 -495640 + MTEb LTR MaLR 255 379 0 1 1527 314 183 0 14 chr9 123581121 123581193 -494979 + CT-rich Low_complexity Low_complexity 6 76 0 1 1527 244 25 49 24 chr9 123581453 123581494 -494678 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1527 624 274 14 14 chr9 123581609 123581757 -494415 + RSINE1 SINE B4 2 149 -16 1 1527 278 269 30 0 chr9 123581839 123581906 -494266 + PB1D10 SINE Alu 32 100 -17 1 1527 786 186 15 0 chr9 123581909 123582193 -493979 + GA-rich Low_complexity Low_complexity 1 288 0 1 1527 324 0 0 0 chr9 123584822 123584858 -491314 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1527 414 301 73 66 chr9 123585352 123585640 -490532 - B4A SINE B4 0 292 3 1 1527 224 278 14 14 chr9 123588432 123588505 -487667 + ID2 SINE ID 1 73 -10 1 1527 228 260 73 50 chr9 123588699 123588833 -487339 + MIRc SINE MIR 38 173 -95 1 1527 354 186 44 53 chr9 123588927 123589036 -487136 - Lx2 LINE L1 -389 5773 5663 1 1527 314 203 0 68 chr9 123589535 123589609 -486563 + ID4_ SINE ID 2 70 -13 1 1527 777 94 87 0 chr9 123589631 123589758 -486414 + B1_Mus1 SINE Alu 11 148 0 1 1527 379 183 28 0 chr9 123589775 123589846 -486326 + ID_B1 SINE B4 146 218 -6 1 1527 530 289 20 30 chr9 123589856 123590012 -486160 + B3A SINE B2 46 205 -11 1 1527 435 143 12 15 chr9 123590103 123590196 -485976 + B1_Mur4 SINE Alu 38 129 -21 1 1527 656 285 14 50 chr9 123590366 123590584 -485588 - B4A SINE B4 -82 210 1 1 1527 547 255 83 9 chr9 123592011 123592198 -483974 + B3 SINE B2 1 194 -4 1 1527 23 0 0 0 chr9 123593016 123593039 -483133 + AT_rich Low_complexity Low_complexity 1 23 0 1 1527 266 249 128 37 chr9 123594048 123594137 -482035 - L1M5 LINE L1 -387 5853 5744 1 1527 267 31 0 0 chr9 123594137 123594169 -482003 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1527 266 249 128 37 chr9 123594169 123594267 -481905 - L1M5 LINE L1 -497 5743 5650 1 1527 219 243 64 51 chr9 123594496 123594574 -481598 + B1F2 SINE Alu 2 80 -69 1 1527 260 70 23 0 chr9 123594900 123594943 -481229 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1527 219 36 0 0 chr9 123595108 123595136 -481036 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1527 1511 158 104 16 chr9 123596008 123596604 -479568 - Lx9 LINE L1 0 7644 6682 1 1527 450 257 20 0 chr9 123596667 123596768 -479404 + PB1D10 SINE Alu 1 103 -14 1 1527 221 0 0 33 chr9 123596768 123596798 -479374 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1 1527 753 178 15 7 chr9 123597043 123597179 -478993 + B1_Mur4 SINE Alu 2 138 -12 1 1527 695 131 110 7 chr9 123597274 123597420 -478752 + RMER4B LTR ERVK 17 177 -408 1 1527 439 206 217 54 chr9 123597489 123597700 -478472 + RMER4B LTR ERVK 348 587 -24 1 1527 201 171 0 0 chr9 123597965 123598000 -478172 + T-rich Low_complexity Low_complexity 1 35 0 1 1527 376 229 73 9 chr9 123598435 123598545 -477627 - RLTR19-int LTR ERVK -4544 1593 1477 1 1527 320 325 0 0 chr9 123598582 123598705 -477467 + (CCA)n Simple_repeat Simple_repeat 1 123 0 1 1527 1116 224 132 13 chr9 123599650 123599967 -476205 + ORR1E LTR MaLR 1 355 -4 1 1527 353 287 113 27 chr9 123600306 123600492 -475680 - L1M5 LINE L1 -3541 2605 2404 1 190 290 306 62 26 chr9 123600732 123601012 -475160 + L2a LINE L2 2817 3144 -282 1 1528 279 289 199 10 chr9 123601128 123601435 -474737 + L2 LINE L2 2010 2374 -1045 1 1528 421 294 34 99 chr9 123601793 123602117 -474055 + L1ME3A LINE L1 5713 6015 -158 1 1528 850 191 148 5 chr9 123602401 123602590 -473582 + B3 SINE B2 1 216 0 1 1528 558 202 26 0 chr9 123602604 123602718 -473454 + B1_Mur2 SINE Alu 24 140 -9 1 1528 585 323 42 11 chr9 123603131 123603391 -472781 + MLT1C LTR MaLR 200 467 0 1 1528 486 291 98 36 chr9 123603573 123603930 -472242 + L1ME1 LINE L1 5764 6142 -37 1 1528 232 333 56 16 chr9 123604819 123604944 -471228 - LTR16A LTR ERVL -288 163 34 1 1528 780 287 191 18 chr9 123604963 123605373 -470799 - LTR75 LTR ERVL -20 542 62 1 1528 249 321 0 12 chr9 123605483 123605568 -470604 + PB1D10 SINE Alu 34 117 0 1 1528 584 245 182 8 chr9 123605568 123605815 -470357 + L1M5 LINE L1 3877 4166 -1980 1 1528 295 205 0 35 chr9 123606079 123606165 -470007 + CT-rich Low_complexity Low_complexity 4 86 0 1 1528 918 218 18 66 chr9 123606175 123606401 -469771 - B3 SINE B2 0 216 2 1 1528 22 56 0 0 chr9 123608774 123608810 -467362 + AT_rich Low_complexity Low_complexity 1 36 0 1 1528 257 297 116 37 chr9 123609649 123609838 -466334 - LTR87 LTR ERVL? 0 624 421 1 1528 392 284 108 0 chr9 123610457 123610559 -465613 - B3A SINE B2 -84 114 2 1 1528 287 286 14 0 chr9 123610581 123610651 -465521 + ID SINE ID 5 75 -149 1 1528 667 217 0 48 chr9 123610690 123610835 -465337 - B3 SINE B2 0 216 79 1 1528 944 278 14 5 chr9 123611773 123611986 -464186 - ID_B1 SINE B4 -9 215 1 1 1528 996 283 61 11 chr9 123612225 123612600 -463572 + Lx7 LINE L1 843 1236 -6492 1 1528 6502 177 35 31 chr9 123612629 123614241 -461931 + Lx7 LINE L1 4642 6280 -1416 1 1528 3833 240 50 20 chr9 123614256 123615217 -460955 + Lx7 LINE L1 6419 7408 -288 1 1528 356 261 103 48 chr9 123616065 123616230 -459942 + L1MC5 LINE L1 7739 7912 -49 1 1528 263 281 16 0 chr9 123616260 123616324 -459848 + ID4 SINE ID 5 69 -14 1 1528 249 45 44 22 chr9 123617292 123617337 -458835 - B3 SINE B2 -6 210 165 1 1528 291 190 0 0 chr9 123617348 123617406 -458766 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1 1528 311 289 67 0 chr9 123617424 123617533 -458639 - B3A SINE B2 -67 128 1 1 1528 189 303 100 10 chr9 123618845 123618945 -457227 + L2a LINE L2 3299 3407 -19 1 1528 696 127 0 0 chr9 123619533 123619643 -456529 + (GGGA)n Simple_repeat Simple_repeat 4 113 0 1 1528 717 350 42 18 chr9 123619809 123620094 -456078 + B4A SINE B4 1 292 0 1 1528 300 53 0 0 chr9 123620916 123620954 -455218 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1528 240 35 0 0 chr9 123622166 123622195 -453977 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1528 3539 211 58 43 chr9 123623310 123623445 -452727 - RCHARR1 DNA MER1_type -9 965 853 1 1528 839 175 43 7 chr9 123623445 123623583 -452589 + B1_Mur3 SINE Alu 1 143 -6 1 1528 3539 211 58 43 chr9 123623583 123624396 -451776 - RCHARR1 DNA MER1_type -122 852 3 1 1528 754 197 27 27 chr9 123624620 123624766 -451406 + B1_Mur3 SINE Alu 2 147 -2 1 1528 387 274 103 0 chr9 123625286 123625403 -450769 + Lx8 LINE L1 6818 6946 -527 1 1528 527 198 20 0 chr9 123625428 123625529 -450643 + B1_Mus2 SINE Alu 43 145 -2 1 1528 955 263 121 3 chr9 123625533 123625815 -450357 + Lx8 LINE L1 7041 7355 -118 1 1528 207 0 0 0 chr9 123626578 123626601 -449571 + (CTCG)n Simple_repeat Simple_repeat 4 26 0 1 1528 4127 60 0 2 chr9 123627329 123627843 -448329 - L1_Mm LINE L1 -671 5212 4700 1 1528 3100 58 11 0 chr9 123627843 123628219 -447953 + L1Md_F2 LINE L1 6203 6582 0 1 1528 615 197 22 1 chr9 123628263 123628392 -447780 + PB1D9 SINE Alu 10 147 -2 1 1528 249 344 37 45 chr9 123628273 123628407 -447765 + B4A SINE B4 106 238 -54 1 1528 444 280 71 112 chr9 123628954 123629123 -447049 + RSINE1 SINE B4 4 165 0 1 1528 186 133 0 0 chr9 123629296 123629326 -446846 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1528 377 221 101 28 chr9 123630567 123630812 -445360 - RMER17B LTR ERVK -537 421 1 1 1528 247 304 13 0 chr9 123631344 123631423 -444749 + Lx9 LINE L1 7316 7395 -249 1 1528 21 71 0 0 chr9 123631431 123631473 -444699 + AT_rich Low_complexity Low_complexity 1 42 0 1 1528 1177 239 126 20 chr9 123631896 123632254 -443918 + MTD LTR MaLR 1 396 -23 1 1528 1267 61 0 0 chr9 123633520 123633667 -442505 + B1_Mus2 SINE Alu 1 147 0 1 1528 275 321 74 45 chr9 123634360 123634536 -441636 + L1MD LINE L1 5538 5718 -641 1 1528 21 36 0 0 chr9 123635701 123635729 -440443 + AT_rich Low_complexity Low_complexity 1 28 0 1 1528 332 367 20 0 chr9 123635789 123635887 -440285 - PB1 SINE Alu -21 106 7 1 1528 291 284 118 26 chr9 123635907 123636059 -440113 - L1MC1 LINE L1 0 6333 6168 1 1528 12107 157 45 28 chr9 123636131 123637335 -438837 - Lx2A1 LINE L1 -1134 5874 4656 2 1528 393 75 0 0 chr9 123637335 123637388 -438784 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1528 12107 155 46 27 chr9 123637388 123637748 -438424 - Lx2A1 LINE L1 -1225 4655 4282 2 1528 999 103 0 0 chr9 123637748 123637894 -438278 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 2 1528 12107 155 46 27 chr9 123637894 123638680 -437492 - Lx2A1 LINE L1 -1599 4281 3488 2 1528 304 163 0 0 chr9 123638681 123638730 -437442 - Lx2A1 LINE L1 -2547 3333 3285 2 1528 4819 128 98 15 chr9 123638782 123639395 -436777 + RMER12B LTR ERVK 230 900 -504 2 1528 1263 95 43 27 chr9 123639395 123639579 -436593 + B2_Mm2 SINE B2 2 188 -7 2 1528 4819 128 98 15 chr9 123639579 123639896 -436276 + RMER12B LTR ERVK 901 1237 -167 2 1528 267 211 19 0 chr9 123639897 123639949 -436223 + RMER12B LTR ERVK 1172 1224 -180 2 1528 1303 196 151 60 chr9 123639948 123640372 -435800 + RLTR21 LTR ERVK 770 1500 -72 2 1528 298 344 21 32 chr9 123640729 123640750 -435422 - B4 SINE B4 -115 177 86 2 1528 344 306 0 0 chr9 123640750 123640822 -435350 - B1F1 SINE Alu -77 72 1 2 1528 258 239 14 0 chr9 123640827 123640898 -435274 - L1M2 LINE L1 -481 5819 5748 2 1528 788 140 311 0 chr9 123641130 123641294 -434878 - B3 SINE B2 0 216 2 2 1528 797 280 5 0 chr9 123642497 123642683 -433489 - B3 SINE B2 0 216 30 2 1528 182 340 80 27 chr9 123642788 123642900 -433272 - L2b LINE L2 -1 3374 3257 2 1528 597 14 0 0 chr9 123643554 123643624 -432548 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1528 1745 141 85 62 chr9 123643635 123643878 -432294 + RMER17C LTR ERVK 1 227 -183 2 1528 253 68 45 0 chr9 123643878 123643922 -432250 + (TCTCTG)n Simple_repeat Simple_repeat 6 51 0 2 1528 1745 141 85 62 chr9 123643922 123644078 -432094 + RMER17C LTR ERVK 228 409 -1 2 1528 448 194 20 0 chr9 123644442 123644540 -431632 + L1M4 LINE L1 4521 4620 -1526 2 1528 2139 278 43 14 chr9 123644538 123645185 -430987 - Lx8 LINE L1 0 7473 6808 2 1528 417 118 40 0 chr9 123645495 123645571 -430601 - Lx LINE L1 0 7460 7382 2 1528 528 101 0 37 chr9 123645571 123645653 -430519 - L1_Mur3 LINE L1 -1381 4499 4421 2 1528 7854 132 5 2 chr9 123645647 123647664 -428508 - Lx LINE L1 -7 6647 4627 2 1528 4677 115 12 3 chr9 123647651 123648306 -427866 - L1VL4 LINE L1 -5623 679 19 2 1528 231 111 0 53 chr9 123648312 123648350 -427822 - L1VL4 LINE L1 -6065 237 202 2 1528 401 272 0 0 chr9 123648819 123648900 -427272 + ID4_ SINE ID 1 81 -2 2 1528 1011 126 0 0 chr9 123648906 123649065 -427107 + (GGAA)n Simple_repeat Simple_repeat 1 159 0 2 1528 530 318 90 69 chr9 123650470 123650638 -425534 + B4A SINE B4 10 169 -123 2 1528 450 0 0 0 chr9 123650638 123650688 -425484 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1528 530 318 90 69 chr9 123650688 123650796 -425376 + B4A SINE B4 170 292 0 2 1528 552 68 0 0 chr9 123650967 123651040 -425132 + (CATA)n Simple_repeat Simple_repeat 3 75 0 2 1528 395 238 121 17 chr9 123651233 123651432 -424740 + L1M5 LINE L1 5555 5776 -408 2 1528 3253 11 40 0 chr9 123651834 123652187 -423985 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1528 56639 22 15 2 chr9 123652187 123658575 -417597 - IAPEz-int LTR ERVK 0 6481 8 2 1528 3253 11 40 0 chr9 123658575 123658928 -417244 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1528 262 180 11 22 chr9 123659163 123659254 -416918 + (CAGA)n Simple_repeat Simple_repeat 2 91 0 2 1528 16965 23 1 0 chr9 123659985 123662613 -413559 - L1Md_T LINE L1 0 6582 3954 2 1528 1126 82 7 0 chr9 123663067 123663213 -412959 - B1_Mus2 SINE Alu 0 147 1 2 1528 188 86 29 0 chr9 123663902 123663937 -412235 + (GGGTG)n Simple_repeat Simple_repeat 1 36 0 2 1528 1273 237 75 44 chr9 123664314 123664676 -411496 + MTE2a LTR MaLR 1 373 -6 2 1528 247 247 24 12 chr9 123664799 123664881 -411291 - L1MC LINE L1 -2051 5831 5749 2 1528 902 294 39 11 chr9 123665213 123665492 -410680 - B4A SINE B4 -4 288 2 2 1528 242 29 29 0 chr9 123666327 123666362 -409810 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2 1528 229 289 40 91 chr9 123666559 123666658 -409514 - MER5A DNA MER1_type -90 99 6 2 1528 289 392 0 0 chr9 123667007 123667127 -409045 - PB1 SINE Alu -7 120 1 2 1528 1178 197 14 0 chr9 123667383 123667591 -408581 + B3 SINE B2 1 211 -5 2 1528 181 274 30 0 chr9 123667865 123667939 -408233 + L2a LINE L2 3091 3163 -212 2 1528 681 338 160 31 chr9 123668454 123668873 -407299 + MLT1H LTR MaLR 71 543 -6 2 1528 278 297 56 86 chr9 123668904 123669066 -407106 + L2a LINE L2 3270 3426 0 2 1528 224 264 173 20 chr9 123669135 123669265 -406907 + MIRb SINE MIR 22 166 -102 2 1528 524 255 81 29 chr9 123669740 123669950 -406222 - L1MA7 LINE L1 -4 6287 6067 2 1528 841 261 66 160 chr9 123670295 123670856 -405316 + RLTR18B LTR ERVK 1 508 -4 2 1528 951 288 57 5 chr9 123671016 123671403 -404769 + L1MC LINE L1 4755 5161 -985 2 1528 607 173 0 1 chr9 123671406 123671525 -404647 + B1_Mur4 SINE Alu 1 118 -2 2 1528 258 125 0 0 chr9 123671525 123671573 -404599 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 2 1528 28 0 0 0 chr9 123671974 123672002 -404170 + AT_rich Low_complexity Low_complexity 1 28 0 2 1528 433 243 48 0 chr9 123672288 123672391 -403781 + PB1D10 SINE Alu 3 110 -7 2 1528 213 154 0 0 chr9 123672393 123672432 -403740 + GA-rich Low_complexity Low_complexity 2 40 0 2 1528 303 28 0 0 chr9 123673592 123673628 -402544 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1528 189 0 0 0 chr9 123673628 123673648 -402524 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 2 1528 30 0 0 24 chr9 123673648 123673671 -402501 + AT_rich Low_complexity Low_complexity 1 23 0 2 1528 864 164 0 27 chr9 123673671 123673821 -402351 - B1_Mus2 SINE Alu -1 146 1 2 1528 30 0 0 24 chr9 123673821 123673838 -402334 + AT_rich Low_complexity Low_complexity 1 17 0 2 1528 256 333 26 61 chr9 123677286 123677401 -398771 - B3A SINE B2 -82 116 6 2 1528 270 0 0 0 chr9 123677718 123677748 -398424 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1528 231 182 179 13 chr9 123679398 123679476 -396696 - L1MC LINE L1 -2092 5790 5700 2 1528 1608 149 222 34 chr9 123679887 123680275 -395897 - RMER6B LTR ERVK 0 461 1 2 1528 629 320 22 6 chr9 123680811 123680993 -395179 - B3A SINE B2 -13 185 1 2 1528 395 182 78 29 chr9 123681352 123681454 -394718 - PB1D10 SINE Alu -5 112 6 2 1528 933 113 0 0 chr9 123681628 123681769 -394403 + (GA)n Simple_repeat Simple_repeat 2 142 0 2 1528 406 281 68 50 chr9 123681917 123682312 -393860 - L1ME1 LINE L1 -1973 6022 5601 2 1528 399 310 63 7 chr9 123682312 123682455 -393717 + B4 SINE B4 2 152 -140 2 1528 397 214 172 18 chr9 123682531 123682699 -393473 + B3 SINE B2 1 206 -10 2 1528 180 0 0 0 chr9 123682699 123682719 -393453 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1528 1274 69 0 6 chr9 123682719 123682894 -393278 + (GGAGA)n Simple_repeat Simple_repeat 2 175 0 2 1528 459 0 0 0 chr9 123682916 123682967 -393205 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1528 23 0 0 0 chr9 123683945 123683968 -392204 + AT_rich Low_complexity Low_complexity 1 23 0 2 1528 1152 92 0 0 chr9 123684211 123684573 -391599 + (CA)n Simple_repeat Simple_repeat 1 362 0 2 1528 189 0 0 0 chr9 123685689 123685710 -390462 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1528 206 323 0 0 chr9 123687112 123687174 -388998 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1528 411 21 0 0 chr9 123687440 123687488 -388684 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1528 206 360 79 18 chr9 123687645 123687809 -388363 + L2c LINE L2 3176 3349 -38 2 1528 21 0 0 0 chr9 123689994 123690015 -386157 + AT_rich Low_complexity Low_complexity 1 21 0 2 1528 804 145 49 28 chr9 123690484 123690626 -385546 + B1_Mur3 SINE Alu 5 149 0 2 1528 308 43 22 0 chr9 123690632 123690678 -385494 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1528 715 148 327 0 chr9 123690712 123690874 -385298 + B3 SINE B2 2 216 0 2 1528 1723 192 74 14 chr9 123691386 123691739 -384433 - ORR1D1 LTR MaLR 0 374 1 2 1528 265 174 0 0 chr9 123692208 123692254 -383918 + B4A SINE B4 186 231 -61 2 1528 781 220 38 75 chr9 123692247 123692434 -383738 + B3 SINE B2 24 215 -1 2 1528 229 240 0 0 chr9 123692425 123692475 -383697 + B4A SINE B4 216 265 -27 2 1528 1337 173 104 0 chr9 123692481 123692759 -383413 + IAPLTR4_I LTR ERVK 14 320 -12 2 1528 5600 89 17 32 chr9 123692759 123693623 -382549 + IAPLTR4_I LTR ERVK 11 952 -6629 2 1528 1639 202 116 46 chr9 123693735 123694268 -381904 + RMER16-int LTR ERVK 251 688 -5449 2 1528 406 205 88 9 chr9 123694255 123694368 -381804 + RMER16-int LTR ERVK 1089 1210 -4196 2 1528 680 219 379 30 chr9 123694381 123694603 -381569 + ETnERV2-int LTR ERVK 2454 2753 -4653 2 1528 3236 134 199 2 chr9 123694629 123695218 -380954 + ETnERV2-int LTR ERVK 3567 4271 -3135 2 1528 496 192 25 2 chr9 123695223 123695343 -380829 + MMETn-int LTR ERVK 2357 2464 -2380 2 1528 847 87 39 8 chr9 123695355 123695483 -380689 + IAPEY3-int LTR ERVK 4530 4661 -2920 2 1528 3157 98 13 37 chr9 123695753 123696207 -379965 + IAPEY3-int LTR ERVK 5203 5645 -1936 2 1528 3440 101 2 2 chr9 123696185 123696650 -379522 + IAPEY3-int LTR ERVK 5750 6214 -1367 2 1528 4811 75 48 0 chr9 123696640 123697535 -378637 + IAPEY3-int LTR ERVK 6743 7680 0 2 1528 1462 162 85 0 chr9 123697542 123697825 -378347 + IAPEY3_LTR LTR ERVK 14 320 -12 2 1528 1335 54 0 0 chr9 123700894 123701154 -375018 + (TG)n Simple_repeat Simple_repeat 1 260 0 2 1528 24 0 0 0 chr9 123701670 123701694 -374478 + AT_rich Low_complexity Low_complexity 1 24 0 2 1528 1174 221 168 3 chr9 123703334 123703638 -372534 + ORR1D2 LTR MaLR 11 364 -6 2 1528 728 99 9 0 chr9 123705016 123705127 -371045 + (TCTCCC)n Simple_repeat Simple_repeat 6 117 0 2 1528 300 306 30 20 chr9 123706114 123706214 -369958 - MER5B DNA MER1_type -75 103 3 2 1528 208 190 86 0 chr9 123706347 123706405 -369767 - L3 LINE CR1 -138 4351 4289 2 1528 249 319 143 44 chr9 123707427 123707699 -368473 + L2a LINE L2 2701 2999 -420 2 1528 265 333 11 0 chr9 123708195 123708282 -367890 + L2a LINE L2 3034 3121 -305 2 1528 237 224 82 0 chr9 123708594 123708643 -367529 + B3A SINE B2 75 127 -71 2 1528 248 175 0 34 chr9 123709048 123709107 -367065 + G-rich Low_complexity Low_complexity 4 60 0 2 1528 232 188 141 0 chr9 123709523 123709587 -366585 + ID4_ SINE ID 1 73 -10 2 1528 644 193 41 35 chr9 123711094 123711239 -364933 + B1_Mur2 SINE Alu 2 147 -2 2 1528 651 112 0 0 chr9 123711250 123711348 -364824 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 2 1528 428 274 188 5 chr9 123711409 123711622 -364550 + RMER15 LTR ERVL 275 526 -49 2 1528 1184 90 195 5 chr9 123712399 123712589 -363583 - URR1A DNA MER1_type 0 226 1 3 1528 788 262 6 28 chr9 123712733 123712910 -363262 + B3A SINE B2 6 178 -20 3 1528 707 281 18 0 chr9 123712916 123713080 -363092 + B3 SINE B2 47 213 -3 3 1528 367 296 29 7 chr9 123713395 123713531 -362641 - MER3 DNA MER1_type -1 208 70 3 1528 185 0 0 39 chr9 123713812 123713838 -362334 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 3 1528 600 198 0 0 chr9 123714504 123714615 -361557 - B3 SINE B2 -105 111 1 3 1528 328 195 26 13 chr9 123716230 123716308 -359864 + Charlie4z DNA MER1_type 81 159 -8 3 1528 231 254 68 27 chr9 123716292 123716365 -359807 + ID_B1 SINE B4 73 148 -76 3 1528 248 220 40 0 chr9 123716655 123716705 -359467 - B4 SINE B4 -238 54 3 3 1528 1284 245 99 33 chr9 123717992 123718385 -357787 - MTD LTR MaLR 0 419 1 3 1528 780 236 45 35 chr9 123718484 123718686 -357486 + B3 SINE B2 5 208 -8 3 1528 452 234 75 0 chr9 123721454 123721561 -354611 - B1_Mur1 SINE Alu -22 127 13 3 1528 813 236 96 0 chr9 123721677 123721876 -354296 + ID_B1 SINE B4 3 220 -4 3 1528 387 0 0 0 chr9 123722796 123722839 -353333 + (CAAAC)n Simple_repeat Simple_repeat 4 46 0 3 1528 454 328 97 25 chr9 123725427 123725665 -350507 - ORR1E LTR MaLR -104 255 1 3 1528 3184 268 150 71 chr9 123725665 123726745 -349427 - MTEb-int LTR MaLR -53 1527 357 3 1528 762 218 68 15 chr9 123726745 123726950 -349222 - B3 SINE B2 0 216 1 3 1528 3184 268 150 71 chr9 123726950 123727271 -348901 - MTEb-int LTR MaLR -1224 356 15 3 1528 349 235 61 10 chr9 123727276 123727375 -348797 - MTEb LTR MaLR -5 374 271 3 1528 33 43 0 0 chr9 123727545 123727592 -348580 + AT_rich Low_complexity Low_complexity 1 47 0 3 1528 595 303 149 15 chr9 123727635 123727903 -348269 + MLT1B LTR MaLR 87 390 0 3 1528 464 162 9 0 chr9 123728894 123728999 -347173 + GA-rich Low_complexity Low_complexity 1 106 0 3 1528 263 28 28 0 chr9 123729265 123729301 -346871 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1528 596 239 22 33 chr9 123729305 123729487 -346685 + L1M5 LINE L1 4471 4650 -1496 3 1528 204 125 0 0 chr9 123729518 123729550 -346622 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1528 608 221 37 30 chr9 123729585 123729720 -346452 + B1_Mur4 SINE Alu 15 150 0 3 1528 220 228 18 0 chr9 123729776 123729833 -346339 + (CAA)n Simple_repeat Simple_repeat 2 59 0 3 1528 292 311 0 0 chr9 123730019 123730093 -346079 - ID4 SINE ID -9 74 1 3 1528 216 0 0 0 chr9 123730227 123730251 -345921 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1528 617 239 36 0 chr9 123730270 123730408 -345764 + B1_Mur2 SINE Alu 3 145 -4 3 1528 400 241 166 30 chr9 123730449 123730679 -345493 + L1M5 LINE L1 5031 5290 -856 3 1528 360 164 0 0 chr9 123731167 123731234 -344938 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1529 629 242 33 13 chr9 123732845 123732996 -343176 - B3 SINE B2 -20 196 43 3 1529 757 191 37 0 chr9 123733367 123733503 -342669 + B1_Mur1 SINE Alu 1 141 -8 3 1529 648 70 0 0 chr9 123733871 123733957 -342215 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 3 1529 210 229 0 0 chr9 123733957 123734027 -342145 + GA-rich Low_complexity Low_complexity 3 72 0 3 1529 254 299 110 15 chr9 123736959 123737095 -339077 - Charlie8 DNA MER1_type -2234 194 46 3 1529 1664 158 60 16 chr9 123740600 123740916 -335256 + MTB_Mm LTR MaLR 1 330 -77 3 1529 246 81 0 0 chr9 123741299 123741336 -334836 + (TGGGGG)n Simple_repeat Simple_repeat 5 41 0 3 1529 295 191 125 21 chr9 123741940 123742036 -334136 + L1MC4 LINE L1 6942 7047 -995 3 1529 1565 52 0 15 chr9 123742801 123742996 -333176 + B2_Mm1t SINE B2 1 192 -1 3 1529 288 0 0 0 chr9 123747505 123747537 -328635 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1529 302 320 62 0 chr9 123747556 123747653 -328519 - RSINE1 SINE B4 -54 111 9 3 1529 300 273 20 20 chr9 123748470 123748571 -327601 + GA-rich Low_complexity Low_complexity 2 102 0 3 1529 216 0 0 0 chr9 123750179 123750203 -325969 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 1529 256 320 54 15 chr9 123750918 123751048 -325124 + MIR SINE MIR 36 170 -92 3 1529 1365 85 11 0 chr9 123751900 123752077 -324095 + B2_Mm1t SINE B2 1 179 -14 3 1529 357 133 310 26 chr9 123752124 123752240 -323932 + B2_Mm2 SINE B2 47 195 0 3 1529 23 0 0 0 chr9 123752920 123752943 -323229 + AT_rich Low_complexity Low_complexity 1 23 0 3 1529 1779 213 58 3 chr9 123752947 123753329 -322843 + MTD LTR MaLR 12 414 -5 3 1529 849 136 32 7 chr9 123754764 123754919 -321253 + MTC LTR MaLR 1 159 -262 3 1529 1587 155 88 32 chr9 123754919 123755293 -320879 + MTC-int LTR MaLR 864 1258 0 3 1529 2089 174 54 25 chr9 123755293 123755700 -320472 + MTC LTR MaLR 1 419 -2 3 1529 3586 153 73 8 chr9 123756398 123757068 -319104 + Lx9 LINE L1 6930 7643 -1 3 1529 710 292 102 28 chr9 123757649 123758012 -318160 + MLT1B LTR MaLR 1 390 0 3 1529 324 0 0 0 chr9 123759686 123759722 -316450 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1529 207 0 0 0 chr9 123759844 123759867 -316305 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1529 189 313 130 0 chr9 123762889 123763004 -313168 - MIRc SINE MIR -70 198 69 3 1529 742 189 7 7 chr9 123763097 123763236 -312936 - B3 SINE B2 -75 141 3 3 1529 306 0 0 0 chr9 123764144 123764178 -311994 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1529 1184 55 0 14 chr9 123764178 123764315 -311857 - B1_Mus2 SINE Alu -10 137 1 3 1529 290 218 45 22 chr9 123765962 123766051 -310121 - Charlie10b DNA MER1_type -138 104 14 3 1529 286 264 118 16 chr9 123766072 123766199 -309973 + MIRc SINE MIR 5 144 -124 3 1529 216 0 0 0 chr9 123766675 123766699 -309473 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1529 5693 46 0 22 chr9 123766707 123767424 -308748 + L1Md_F2 LINE L1 5882 6582 0 3 1529 1459 280 143 40 chr9 123767426 123768336 -307836 + L1MB2 LINE L1 4731 5720 -127 3 1529 1489 191 88 98 chr9 123768336 123768521 -307651 + ORR1C2 LTR MaLR 1 178 -206 3 1529 243 0 0 0 chr9 123768521 123768548 -307624 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 3 1529 1489 191 88 98 chr9 123768548 123768750 -307422 + ORR1C2 LTR MaLR 179 384 0 3 1529 1459 295 162 45 chr9 123768750 123769073 -307099 + L1MB2 LINE L1 5721 5965 -206 3 1529 373 277 156 6 chr9 123769073 123769240 -306932 + L1MB2 LINE L1 3545 3736 -2410 3 1529 230 311 54 45 chr9 123769240 123769351 -306821 - PB1D10 SINE Alu 0 117 6 3 1529 416 271 80 36 chr9 123769255 123769393 -306779 - ID_B1 SINE B4 -33 191 48 3 1529 416 19 0 19 chr9 123769487 123769541 -306631 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 3 1529 639 255 7 0 chr9 123769568 123769709 -306463 - RSINE1 SINE B4 -22 143 2 3 1529 458 291 42 33 chr9 123769709 123769922 -306250 + L1MB2 LINE L1 3764 3978 -2168 3 1529 238 244 91 50 chr9 123770268 123770389 -305783 + RMER5 LTR ERV1 282 407 -127 3 1529 450 247 0 0 chr9 123770406 123770491 -305681 + ID_B1 SINE B4 133 217 -7 3 1529 1170 62 7 0 chr9 123771479 123771624 -304548 + B1_Mus2 SINE Alu 2 147 0 3 1529 214 141 0 40 chr9 123771636 123771710 -304462 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 3 1529 424 273 16 16 chr9 123771803 123771926 -304246 + ID_B1 SINE B4 92 214 -10 3 1529 274 324 50 35 chr9 123771926 123771938 -304234 + B1_Mur4 SINE Alu 45 149 -1 3 1529 425 305 22 39 chr9 123772019 123772200 -303972 + ERVL-B4-int LTR ERVL 3631 3808 -1906 3 1529 472 218 101 25 chr9 123772252 123772425 -303747 + B3 SINE B2 9 187 -8 3 1529 2254 138 48 50 chr9 123772929 123773224 -302948 - MTC LTR MaLR 0 421 121 3 1529 3095 43 0 18 chr9 123773224 123773625 -302547 + L1Md_F3 LINE L1 6191 6584 0 3 1529 2254 138 48 50 chr9 123773625 123773749 -302423 - MTC LTR MaLR -301 120 3 3 1529 196 189 0 0 chr9 123773790 123773827 -302345 - MIR SINE MIR -4 258 222 3 1529 1734 21 0 0 chr9 123774073 123774266 -301906 + B2_Mm1a SINE B2 1 193 0 3 1529 462 333 43 37 chr9 123774317 123774479 -301693 - RSINE1 SINE B4 0 165 3 3 1529 492 299 68 15 chr9 123774479 123774666 -301506 + MLT1H1 LTR MaLR 16 253 -296 3 1529 1143 264 130 25 chr9 123774704 123775151 -301021 - RMER5 LTR ERV1 0 534 41 3 1529 222 227 0 0 chr9 123775151 123775195 -300977 + (CAAT)n Simple_repeat Simple_repeat 2 45 0 3 1529 185 211 19 0 chr9 123775681 123775733 -300439 + CT-rich Low_complexity Low_complexity 2 54 0 3 1529 2872 218 204 8 chr9 123775746 123776468 -299704 - Lx5 LINE L1 -5 7045 6159 3 1529 392 63 32 0 chr9 123776569 123776632 -299540 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 3 1529 202 302 115 0 chr9 123778746 123778842 -297330 + MIR SINE MIR 120 226 -36 3 1529 1203 255 12 61 chr9 123780630 123780976 -295196 + MTEb LTR MaLR 1 329 -50 3 1529 180 0 0 0 chr9 123781007 123781027 -295145 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 3 1529 2808 137 15 33 chr9 123781577 123782096 -294076 + RLTR28 LTR ERVL 1 510 -14 3 1529 1242 94 134 0 chr9 123832334 123832536 -243636 + RMER1B Other Other 836 1064 -2 3 1529 822 113 0 0 chr9 123832542 123832666 -243506 + (GAA)n Simple_repeat Simple_repeat 3 126 0 3 1529 858 220 0 0 chr9 123832667 123832826 -243346 + L1M2 LINE L1 5499 5657 -655 3 1529 325 365 6 0 chr9 123833443 123833599 -242573 + MLT1A LTR MaLR 216 372 -2 3 1529 263 328 28 56 chr9 123833610 123833752 -242420 + MLT1A LTR MaLR 425 562 -33 3 1529 557 181 47 0 chr9 123834662 123834788 -241384 - B1_Mus2 SINE Alu -1 148 5 3 1529 656 231 22 0 chr9 123834829 123834963 -241209 + ID_B1 SINE B4 87 223 -1 3 1529 508 242 169 11 chr9 123834980 123835164 -241008 + ID_B1 SINE B4 12 224 0 3 1529 1580 48 16 0 chr9 123835189 123835378 -240794 + B2_Mm1a SINE B2 2 193 0 3 1529 651 123 339 67 chr9 123835392 123835557 -240615 + B3 SINE B2 3 212 -4 3 1529 672 174 82 15 chr9 123835559 123835693 -240479 + B1_Mur2 SINE Alu 1 143 -6 4 1529 398 260 137 8 chr9 123835740 123835864 -240308 - B3 SINE B2 -38 178 39 4 1529 429 20 0 0 chr9 123835885 123835935 -240237 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 4 1529 498 192 102 23 chr9 123835950 123836078 -240094 + B1_Mus2 SINE Alu 10 147 0 4 1529 1125 49 42 0 chr9 123836087 123836229 -239943 + B1_Mus1 SINE Alu 1 148 0 4 1529 189 0 0 0 chr9 123837956 123837977 -238195 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1529 1109 66 0 0 chr9 123837977 123838114 -238058 - B1_Mus1 SINE Alu -10 138 2 4 1529 457 259 34 17 chr9 123838166 123838284 -237888 - PB1D7 SINE Alu 0 120 1 4 1529 640 131 75 0 chr9 123838399 123838506 -237666 + B1_Mur3 SINE Alu 23 137 -12 4 1529 342 296 31 39 chr9 123838402 123838532 -237640 + B4 SINE B4 111 239 -53 4 1529 360 239 0 21 chr9 123842150 123842244 -233928 - MLT1A1 LTR MaLR 0 408 317 4 1529 244 329 53 97 chr9 123843410 123843636 -232536 + MLT1J LTR MaLR 242 457 -55 4 1529 368 287 17 9 chr9 123843681 123843797 -232375 + MER5A1 DNA MER1_type 49 165 -1 4 1529 645 288 121 0 chr9 123843846 123844044 -232128 - ID_B1 SINE B4 0 224 3 4 1529 562 304 25 6 chr9 123844666 123844825 -231347 - RSINE1 SINE B4 0 165 4 4 1529 788 141 268 33 chr9 123845368 123845551 -230621 - URR1A DNA MER1_type 0 226 1 4 1529 1013 291 67 26 chr9 123846312 123846783 -229389 - Lx7 LINE L1 -10 7686 7044 4 1529 784 114 25 6 chr9 123847026 123847185 -228987 + (TCTA)n Simple_repeat Simple_repeat 2 163 0 4 1529 2067 181 38 15 chr9 123847212 123847611 -228561 - Lx9 LINE L1 -429 7215 6808 4 1529 189 74 0 0 chr9 123847682 123847709 -228463 + (ATGTG)n Simple_repeat Simple_repeat 1 27 0 4 1529 1475 223 189 28 chr9 123847785 123848288 -227884 + RMER20B LTR ERVK 6 589 -38 4 1529 2077 191 33 68 chr9 123848305 123848821 -227351 + RMER20B LTR ERVK 21 518 -109 4 1529 733 196 81 23 chr9 123848828 123849000 -227172 + RMER20B LTR ERVK 445 626 -1 4 1529 298 273 13 132 chr9 123849253 123849405 -226767 - ID_B1 SINE B4 0 224 91 4 1529 299 319 67 9 chr9 123850221 123850460 -225712 + LTR68 LTR ERV1 57 505 -235 4 1529 252 351 29 36 chr9 123850639 123850778 -225394 + MLT1H LTR MaLR 398 535 -14 4 1529 232 297 117 17 chr9 123850785 123850905 -225267 - L1M5 LINE L1 -1041 5105 4974 4 1529 29 0 0 0 chr9 123850979 123851008 -225164 + AT_rich Low_complexity Low_complexity 1 29 0 4 1529 425 322 138 22 chr9 123851521 123851702 -224470 - ID_B1 SINE B4 -10 214 13 4 1529 675 143 63 0 chr9 123851835 123851961 -224211 + B1_Mus1 SINE Alu 15 148 0 4 1529 824 177 6 0 chr9 123851966 123852141 -224031 + GA-rich Low_complexity Low_complexity 3 178 0 4 1529 309 357 66 6 chr9 123852762 123852945 -223227 + L2a LINE L2 2932 3125 -301 4 1529 266 337 50 115 chr9 123853599 123853877 -222295 - ORR1E LTR MaLR 0 359 100 4 1529 365 247 0 0 chr9 123854166 123854243 -221929 + ID4_ SINE ID 5 81 -2 4 1529 234 105 0 0 chr9 123854243 123854281 -221891 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 4 1529 848 251 164 68 chr9 123855537 123856067 -220105 - L1MD1 LINE L1 -266 5976 5371 4 1529 491 262 141 7 chr9 123856067 123856209 -219963 - RSINE1 SINE B4 -2 163 3 4 1529 754 251 165 69 chr9 123856209 123856300 -219872 - L1MD1 LINE L1 -989 5370 5298 4 1529 433 221 13 0 chr9 123856300 123856377 -219795 - ID4_ SINE ID -4 79 2 4 1529 754 251 165 69 chr9 123856377 123856409 -219763 - L1MD1 LINE L1 -1062 5297 5266 4 1529 270 0 0 0 chr9 123856528 123856558 -219614 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1529 216 0 0 0 chr9 123856581 123856605 -219567 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1529 1130 68 0 7 chr9 123856605 123856741 -219431 - B1_Mus1 SINE Alu -11 137 2 4 1529 386 244 274 13 chr9 123856749 123856902 -219270 - B3A SINE B2 -23 193 1 4 1529 468 220 220 0 chr9 123857130 123857298 -218874 + L1MB3 LINE L1 5967 6171 -12 4 1529 1027 229 43 0 chr9 123857316 123857526 -218646 + ID_B1 SINE B4 2 220 -4 4 1529 384 312 56 0 chr9 123858437 123858562 -217610 + B1F SINE Alu 18 149 0 4 1529 691 45 35 9 chr9 123858569 123858682 -217490 + (GA)n Simple_repeat Simple_repeat 2 117 0 4 1529 304 248 91 53 chr9 123859379 123859511 -216661 + L1MC4 LINE L1 7770 7906 -136 4 1529 747 221 13 0 chr9 123859995 123860153 -216019 + RLTR40 LTR ERVK 658 817 0 4 1529 333 287 35 0 chr9 123860481 123860568 -215604 - MER58C DNA MER1_type -6 209 120 4 1529 3498 15 8 0 chr9 123861977 123862370 -213802 - MTA_Mm LTR MaLR 0 396 1 4 1529 215 289 26 0 chr9 123862488 123862564 -213608 + L3 LINE CR1 3659 3736 -753 4 1530 436 299 8 0 chr9 123863338 123863465 -212707 - MER20 DNA MER1_type -4 215 88 4 1530 2850 146 107 14 chr9 123863628 123864142 -212030 - RMER1B Other Other -2 1064 503 4 1530 390 241 24 0 chr9 123864263 123864346 -211826 + B1F SINE Alu 65 149 0 4 1530 287 327 97 19 chr9 123864487 123864693 -211479 - MLT1D LTR MaLR 0 505 284 4 1530 473 298 27 48 chr9 123864760 123864947 -211225 - RLTR23 LTR ERV1 -4 426 244 4 1530 293 234 0 0 chr9 123865271 123865335 -210837 - MLT1D LTR MaLR -366 139 76 4 1530 2833 85 45 0 chr9 123865515 123865915 -210257 - BGLII LTR ERVK 0 421 4 4 1530 613 287 0 34 chr9 123866847 123866995 -209177 + B3A SINE B2 2 144 -54 4 1530 246 62 0 0 chr9 123867010 123867042 -209130 + (TTCTC)n Simple_repeat Simple_repeat 3 34 0 4 1530 425 305 22 39 chr9 123867645 123867826 -208346 + ERVL-B4-int LTR ERVL 3631 3808 -1906 4 1530 472 218 101 25 chr9 123867878 123868051 -208121 + B3 SINE B2 9 187 -8 4 1530 2254 138 48 50 chr9 123868555 123868850 -207322 - MTC LTR MaLR 0 421 121 4 1530 3128 43 0 15 chr9 123868850 123869250 -206922 + L1Md_F3 LINE L1 6191 6584 0 4 1530 2254 138 48 50 chr9 123869250 123869374 -206798 - MTC LTR MaLR -301 120 3 4 1530 196 189 0 0 chr9 123869415 123869452 -206720 - MIR SINE MIR -4 258 222 4 1530 1734 21 0 0 chr9 123869698 123869891 -206281 + B2_Mm1a SINE B2 1 193 0 4 1530 462 333 43 37 chr9 123869942 123870104 -206068 - RSINE1 SINE B4 0 165 3 4 1530 492 299 68 15 chr9 123870104 123870291 -205881 + MLT1H1 LTR MaLR 16 253 -296 4 1530 1143 264 130 25 chr9 123870329 123870776 -205396 - RMER5 LTR ERV1 0 534 41 4 1530 222 227 0 0 chr9 123870776 123870820 -205352 + (CAAT)n Simple_repeat Simple_repeat 2 45 0 4 1530 185 211 19 0 chr9 123871306 123871358 -204814 + CT-rich Low_complexity Low_complexity 2 54 0 4 1530 2872 218 204 8 chr9 123871371 123872093 -204079 - Lx5 LINE L1 -5 7045 6159 4 1530 392 63 32 0 chr9 123872194 123872257 -203915 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 4 1530 202 302 115 0 chr9 123874371 123874467 -201705 + MIR SINE MIR 120 226 -36 4 1530 737 100 15 15 chr9 123874788 123874920 -201252 + (TTCTC)n Simple_repeat Simple_repeat 4 135 0 4 1530 433 239 25 8 chr9 123875116 123875234 -200938 - L1MB7 LINE L1 -212 5972 5853 4 1530 589 176 58 14 chr9 123875290 123875428 -200744 - B1_Mur3 SINE Alu 0 149 6 4 1530 378 320 39 16 chr9 123875446 123875573 -200599 + B3A SINE B2 18 147 -51 4 1530 470 289 71 54 chr9 123875772 123876227 -199945 - L1MB7 LINE L1 -496 5688 5199 4 1530 231 36 0 0 chr9 123876227 123876255 -199917 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1530 1162 50 0 0 chr9 123876255 123876396 -199776 - B1_Mus1 SINE Alu -7 141 1 4 1530 318 227 31 124 chr9 123876396 123876438 -199734 - L1MB7 LINE L1 -948 5198 5162 4 1530 380 307 0 17 chr9 123876534 123876650 -199522 + B4 SINE B4 6 119 -173 4 1530 225 0 0 0 chr9 123876931 123876956 -199216 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1530 254 291 11 34 chr9 123877047 123877136 -199036 + MLT1A1 LTR MaLR 318 404 -4 4 1530 604 264 16 0 chr9 123877231 123877360 -198812 - RSINE1 SINE B4 -29 136 6 4 1530 324 0 0 0 chr9 123879553 123879589 -196583 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1530 377 39 20 0 chr9 123880435 123880486 -195686 + (TTA)n Simple_repeat Simple_repeat 3 54 0 4 1530 264 278 36 36 chr9 123880633 123880745 -195427 + MIRb SINE MIR 75 186 -82 4 1530 452 269 23 79 chr9 123880959 123881173 -194999 + L1MA6 LINE L1 5933 6134 -166 4 1530 674 183 15 8 chr9 123883871 123884003 -192169 + B1_Mur2 SINE Alu 10 142 -7 4 1530 289 308 49 91 chr9 123883875 123884018 -192154 + B4A SINE B4 100 236 -56 4 1530 1567 128 39 0 chr9 123884278 123884535 -191637 + Lx7 LINE L1 4830 5096 -784 4 1530 9550 180 54 25 chr9 123884533 123885780 -190392 + Lx7 LINE L1 5461 6757 -939 4 1530 1195 154 46 9 chr9 123885780 123885996 -190176 + URR1A DNA MER1_type 2 225 -1 4 1530 9550 201 59 28 chr9 123885996 123886918 -189254 + Lx7 LINE L1 6758 7696 0 4 1530 3201 58 2 2 chr9 123887280 123887676 -188496 - MTA_Mm LTR MaLR 0 396 1 4 1530 929 235 59 18 chr9 123888394 123888615 -187557 + B4 SINE B4 4 233 -59 4 1530 372 339 45 0 chr9 123888627 123888739 -187433 + B3A SINE B2 72 188 -10 4 1530 264 214 62 125 chr9 123888747 123888827 -187345 + B4 SINE B4 218 292 0 4 1530 297 278 87 52 chr9 123889145 123889260 -186912 - PB1D10 SINE Alu -7 120 3 4 1530 547 294 103 45 chr9 123889412 123889654 -186518 - B4 SINE B4 -27 265 10 4 1530 366 275 33 0 chr9 123889661 123889752 -186420 - PB1D10 SINE Alu -2 115 22 4 1530 521 304 44 15 chr9 123889687 123889824 -186348 - ID_B1 SINE B4 -57 167 27 4 1530 418 241 155 7 chr9 123890004 123890146 -186026 - RSINE1 SINE B4 0 165 3 4 1530 411 186 28 12 chr9 123890353 123890450 -185722 + MTEb LTR MaLR 256 374 -5 4 1530 286 373 45 0 chr9 123890999 123891133 -185039 - MIR SINE MIR -27 235 96 5 1530 203 0 37 0 chr9 123891681 123891708 -184464 + (TTATA)n Simple_repeat Simple_repeat 5 32 0 5 1530 202 374 56 28 chr9 123891741 123891884 -184288 - MIRc SINE MIR -97 171 25 5 1530 348 216 0 0 chr9 123893920 123894022 -182150 + CT-rich Low_complexity Low_complexity 3 104 0 5 1530 237 82 20 39 chr9 123894409 123894460 -181712 + (TTA)n Simple_repeat Simple_repeat 3 52 0 5 1530 342 300 18 35 chr9 123894607 123894721 -181451 + MIRb SINE MIR 75 186 -82 5 1530 363 234 34 65 chr9 123894935 123895161 -181011 + L1MA6 LINE L1 5933 6138 -153 5 1530 543 336 118 105 chr9 123897395 123897434 -178738 + L2 LINE L2 868 904 -2515 5 1530 1516 198 192 58 chr9 123897434 123897950 -178222 + RMER4B LTR ERVK 1 585 0 5 1530 543 336 118 105 chr9 123897950 123898131 -178041 + L2 LINE L2 905 1076 -2343 5 1530 1245 84 84 0 chr9 123898131 123898310 -177862 - B2_Mm2 SINE B2 0 195 2 5 1530 543 336 118 105 chr9 123898310 123898608 -177564 + L2 LINE L2 1077 1358 -2061 5 1530 4572 109 41 66 chr9 123898608 123899397 -176775 + Lx2A LINE L1 6238 7006 -2 5 1530 543 336 118 105 chr9 123899397 123899939 -176233 + L2 LINE L2 1359 1943 -1476 5 1530 233 281 44 22 chr9 123899941 123900032 -176140 + L2 LINE L2 2180 2272 -1147 5 1530 1366 141 14 5 chr9 123900508 123900722 -175450 + URR1A DNA MER1_type 11 226 0 5 1530 11151 30 0 0 chr9 123901689 123903073 -173099 + L1Md_T LINE L1 4203 5586 -297 5 1530 8126 39 17 0 chr9 123903073 123904052 -172120 + L1Md_T LINE L1 5587 6582 0 5 1530 680 201 34 34 chr9 123904744 123904893 -171279 - B1_Mur4 SINE Alu -1 149 1 5 1530 246 283 0 0 chr9 123905234 123905280 -170892 + Charlie1a DNA MER1_type 4 49 -1406 5 1530 835 239 104 35 chr9 123905294 123905611 -170561 + Charlie1a DNA MER1_type 1037 1375 -80 5 1530 653 264 129 26 chr9 123905611 123905805 -170367 + B3 SINE B2 3 216 0 5 1530 216 267 0 0 chr9 123905954 123905999 -170173 + B2_Mm1t SINE B2 1 45 -148 5 1530 316 312 11 0 chr9 123906029 123906122 -170050 + B4A SINE B4 187 280 -12 5 1530 591 15 0 0 chr9 123906132 123906200 -169972 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1530 291 304 159 12 chr9 123906306 123906476 -169696 + MIR SINE MIR 64 258 -4 5 1530 182 312 112 50 chr9 123906471 123906650 -169522 - L3 LINE CR1 -837 3652 3463 5 1530 698 0 90 24 chr9 123906913 123907079 -169093 + (GGAGA)n Simple_repeat Simple_repeat 1 177 0 5 1530 1157 231 55 98 chr9 123907081 123907407 -168765 - MTD LTR MaLR -107 312 1 5 1530 362 291 55 80 chr9 123907679 123907980 -168192 - RMER15 LTR ERVL -155 420 1 5 1530 1330 38 0 0 chr9 123908186 123908345 -167827 + B2_Mm1t SINE B2 2 160 -33 5 1530 243 0 0 0 chr9 123908345 123908372 -167800 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1530 276 207 12 35 chr9 123908388 123908473 -167699 + L1ME3 LINE L1 5360 5442 -722 5 1530 370 281 164 4 chr9 123908597 123908829 -167343 + L1ME3 LINE L1 5484 5752 -421 5 1530 374 267 157 39 chr9 123909654 123909884 -166288 + L1ME3 LINE L1 5906 6162 0 5 1530 958 293 0 10 chr9 123909889 123910096 -166076 + B4A SINE B4 2 206 -86 5 1530 282 373 20 40 chr9 123909979 123910104 -166068 + B1F1 SINE Alu 5 126 -23 5 1530 4157 32 8 2 chr9 123910104 123910598 -165574 + L1Md_F2 LINE L1 6086 6582 0 5 1530 282 373 20 40 chr9 123910598 123910620 -165552 + B1F1 SINE Alu 127 148 -1 5 1530 1029 101 0 0 chr9 123910731 123910910 -165262 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1530 1049 89 0 11 chr9 123910926 123911108 -165064 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1530 1109 231 76 43 chr9 123911139 123911415 -164757 - MTD LTR MaLR -15 404 120 5 1530 213 200 40 0 chr9 123911437 123911487 -164685 + CT-rich Low_complexity Low_complexity 4 55 0 5 1530 324 232 125 38 chr9 123911487 123911658 -164514 - L1MD LINE L1 -2841 3305 3114 5 1530 2739 279 32 18 chr9 123911666 123912082 -164090 + Lx8 LINE L1 6353 6780 -693 5 1530 3224 58 2 2 chr9 123912082 123912478 -163694 - MTA_Mm LTR MaLR 0 396 1 5 1530 2739 279 32 18 chr9 123912478 123912972 -163200 + Lx8 LINE L1 6781 7276 -197 5 1530 975 192 38 42 chr9 123913222 123913434 -162738 - B3 SINE B2 -5 211 1 5 1530 216 0 0 0 chr9 123913473 123913497 -162675 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1530 736 151 42 0 chr9 123913498 123913617 -162555 - B1_Mur4 SINE Alu -13 137 14 5 1530 845 219 50 25 chr9 123913689 123913928 -162244 - Lx7 LINE L1 0 7696 7452 5 1530 344 208 71 20 chr9 123913974 123914072 -162100 - L1MD LINE L1 -3308 2838 2736 5 1530 1537 104 88 0 chr9 123914919 123915027 -161145 - Lx2 LINE L1 0 6997 6869 5 1530 252 0 0 0 chr9 123915027 123915055 -161117 + (CCCA)n Simple_repeat Simple_repeat 1 28 0 5 1530 1537 104 88 0 chr9 123915055 123915186 -160986 - Lx2 LINE L1 -129 6868 6738 5 1530 5360 85 31 1 chr9 123915186 123915965 -160207 + Lx2 LINE L1 5685 6486 -511 5 1530 371 237 81 20 chr9 123915978 123916077 -160095 - PB1D10 SINE Alu -2 115 11 5 1530 7272 64 9 3 chr9 123916274 123917925 -158247 - L1Md_F2 LINE L1 0 6582 4924 5 1530 37 23 0 0 chr9 123917958 123918002 -158170 + AT_rich Low_complexity Low_complexity 1 44 0 5 1530 31915 72 6 0 chr9 123918003 123923251 -152921 + L1Md_F2 LINE L1 307 5586 -297 5 1530 8149 48 0 2 chr9 123923251 123924240 -151932 + L1Md_F2 LINE L1 5587 6573 -9 5 1530 3720 129 36 111 chr9 123924584 123924813 -151359 + RMER6A LTR ERVK 57 294 -462 5 1530 2901 75 31 0 chr9 123924813 123925201 -150971 + MTB LTR MaLR 1 400 0 5 1530 3720 129 36 111 chr9 123925201 123925728 -150444 + RMER6A LTR ERVK 295 756 0 5 1530 1088 228 9 5 chr9 123925897 123926117 -150055 + MTD LTR MaLR 1 221 -198 5 1530 430 186 200 30 chr9 123926114 123926214 -149958 + B1_Mus1 SINE Alu 11 127 -21 5 1530 747 190 179 28 chr9 123926212 123926391 -149781 + MTD LTR MaLR 209 414 -5 5 1530 3916 158 42 15 chr9 123926483 123927156 -149016 - RLTR17 LTR ERVK -1 691 1 5 1530 257 321 102 44 chr9 123927496 123927701 -148471 + MIR SINE MIR 12 228 -34 5 1530 235 288 0 17 chr9 123928617 123928677 -147495 - ID_B1 SINE B4 -13 211 153 5 1530 1384 244 44 0 chr9 123929662 123929981 -146191 + Lx7 LINE L1 6598 6930 -766 5 1530 1275 73 73 0 chr9 123929968 123930159 -146013 - L1_Mus3 LINE L1 -485 6081 5877 5 1530 3703 88 11 6 chr9 123930161 123930686 -145486 + L1_Mus3 LINE L1 6100 6627 -11 5 1530 393 22 0 0 chr9 123930709 123930755 -145417 + (GGA)n Simple_repeat Simple_repeat 3 48 0 5 1530 1683 238 98 20 chr9 123930755 123931213 -144959 + Lx7 LINE L1 6927 7420 -276 5 1530 21 0 0 0 chr9 123931348 123931369 -144803 + AT_rich Low_complexity Low_complexity 1 21 0 5 1530 382 284 12 0 chr9 123933213 123933294 -142878 + B4A SINE B4 1 82 -210 5 1530 756 265 67 55 chr9 123933292 123933715 -142457 + RLTR11A2 LTR ERVK 16 424 -17 5 1530 1643 241 42 36 chr9 123933828 123934305 -141867 - RLTR11A2 LTR ERVK -29 498 19 5 1530 707 307 65 42 chr9 123934616 123934878 -141294 - MT2A LTR ERVL -186 347 80 5 1530 265 303 94 63 chr9 123934832 123934959 -141213 - MTE2a LTR MaLR -248 131 1 5 1530 522 289 316 18 chr9 123935039 123935324 -140848 + ORR1E LTR MaLR 6 375 -4 5 1530 5211 36 0 0 chr9 123935356 123935967 -140205 + L1Md_T LINE L1 5972 6582 0 5 1530 276 346 94 31 chr9 123936240 123936461 -139711 - MIRb SINE MIR -10 258 29 5 1530 1042 168 122 0 chr9 123937697 123937894 -138278 + URR1A DNA MER1_type 6 226 0 5 1530 24 32 0 0 chr9 123939102 123939133 -137039 + AT_rich Low_complexity Low_complexity 1 31 0 5 1530 326 309 0 0 chr9 123939571 123939652 -136520 + ID4_ SINE ID 3 83 0 5 1530 274 277 91 15 chr9 123939835 123939967 -136205 - MER34 LTR ERV1 -308 234 93 5 1530 245 338 26 0 chr9 123940219 123940296 -135876 + ID4_ SINE ID 2 80 -3 5 1530 696 308 26 0 chr9 123940645 123940801 -135371 + B3A SINE B2 1 160 -38 5 1530 369 0 0 0 chr9 123940807 123940848 -135324 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1530 28 61 0 0 chr9 123941014 123941063 -135109 + AT_rich Low_complexity Low_complexity 1 49 0 5 1530 306 73 0 0 chr9 123942716 123942757 -133415 + (TAA)n Simple_repeat Simple_repeat 2 42 0 5 1530 21 0 0 0 chr9 123944882 123944903 -131269 + AT_rich Low_complexity Low_complexity 1 21 0 5 1530 324 303 92 0 chr9 123945514 123945623 -130549 - MER5A DNA MER1_type -67 122 4 5 1530 640 292 22 31 chr9 123946264 123946487 -129685 + RMER15 LTR ERVL 319 539 -36 5 1530 371 250 20 0 chr9 123946727 123946827 -129345 + Lx5 LINE L1 6931 7032 -18 5 1530 2701 50 9 9 chr9 123946827 123947172 -129000 + L1Md_F2 LINE L1 6234 6578 -4 5 1530 192 345 11 67 chr9 123947248 123947338 -128834 + MIR SINE MIR 69 153 -55 5 1530 377 325 105 12 chr9 123947675 123947846 -128326 + LTR78 LTR ERV1 1105 1291 -13 5 1530 261 274 0 14 chr9 123948822 123948896 -127276 + LTR33 LTR ERVL 443 515 0 5 1530 21 57 0 0 chr9 123949385 123949420 -126752 + AT_rich Low_complexity Low_complexity 1 35 0 5 1530 397 261 92 18 chr9 123949728 123949892 -126280 + L1MA4 LINE L1 5752 5927 -373 5 1530 29 0 0 0 chr9 123949906 123949935 -126237 + AT_rich Low_complexity Low_complexity 1 29 0 5 1530 447 112 0 0 chr9 123950098 123950178 -125994 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 1530 369 0 0 0 chr9 123950178 123950219 -125953 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1530 422 356 34 0 chr9 123950967 123951116 -125056 - MER58A DNA MER1_type -5 219 66 5 1530 940 144 12 0 chr9 123951293 123951466 -124706 + CT-rich Low_complexity Low_complexity 4 178 0 5 1530 285 293 0 0 chr9 123951485 123951543 -124629 - ID4 SINE ID -22 61 4 5 1530 740 304 104 63 chr9 123952199 123952795 -123377 + RLTR26 LTR ERVK 1 637 -5 5 1530 307 234 30 69 chr9 123953794 123953895 -122277 + HAL1 LINE L1 2120 2216 -291 5 1530 25 75 0 0 chr9 123954022 123954075 -122097 + AT_rich Low_complexity Low_complexity 1 53 0 5 1530 325 210 76 98 chr9 123954262 123954394 -121778 - HAL1-3A_ME LINE L1 -740 2118 1990 5 1530 636 188 25 57 chr9 123954554 123954571 -121601 + ID_B1 SINE B4 72 224 0 5 1530 1090 57 0 0 chr9 123954571 123954712 -121460 + B1_Mus1 SINE Alu 8 148 0 5 1530 240 242 14 70 chr9 123954730 123954801 -121371 + Lx9 LINE L1 6571 6637 -1007 5 1530 708 12 0 0 chr9 123954892 123954973 -121199 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 5 1530 318 106 0 0 chr9 123954973 123955020 -121152 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1530 2516 108 12 50 chr9 123955021 123955442 -120730 - Lx LINE L1 -16 6638 6234 6 1530 264 59 0 0 chr9 123956405 123956439 -119733 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6 1530 1136 91 19 0 chr9 123956439 123956593 -119579 - B2_Mm2 SINE B2 -38 157 1 6 1530 911 116 14 0 chr9 123956708 123956855 -119317 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 6 1530 6394 51 16 2 chr9 123956857 123957706 -118466 - L1Md_F2 LINE L1 -20 6562 5702 6 1530 357 292 34 0 chr9 123958285 123958374 -117798 - PB1D10 SINE Alu -13 104 13 6 1530 1267 102 0 51 chr9 123958423 123958619 -117553 + B2_Mm2 SINE B2 1 186 -9 6 1530 180 0 0 0 chr9 123959425 123959445 -116727 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1530 621 40 0 0 chr9 123959445 123959521 -116651 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 6 1530 258 306 0 0 chr9 123959555 123959617 -116555 - ID2 SINE ID 0 83 22 6 1530 1092 96 0 0 chr9 123959750 123959896 -116276 - B1_Mus2 SINE Alu 0 147 2 6 1530 211 300 22 22 chr9 123962009 123962101 -114071 - PB1D10 SINE Alu -1 116 25 6 1530 481 297 65 0 chr9 123962207 123962345 -113827 - RSINE1 SINE B4 -16 149 3 6 1530 430 289 19 0 chr9 123962877 123962981 -113191 + PB1D10 SINE Alu 9 114 -3 6 1530 359 355 86 26 chr9 123963075 123963414 -112758 + L1M5 LINE L1 3696 4054 -2092 6 1530 288 0 0 0 chr9 123964001 123964033 -112139 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 1530 6074 174 24 20 chr9 123964033 123965291 -110881 - Lx2B LINE L1 -31 6969 5707 6 1530 1929 148 77 10 chr9 123965294 123965682 -110490 + L1_Mur2 LINE L1 4872 5285 -592 6 1530 194 0 39 0 chr9 123966227 123966253 -109919 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1530 478 279 34 7 chr9 123966385 123966533 -109639 + MER5A1 DNA MER1_type 14 165 -1 6 1530 3277 45 2 2 chr9 123967112 123967512 -108660 + MTB LTR MaLR 1 400 0 6 1530 293 304 59 27 chr9 123968625 123968813 -107359 + MIRc SINE MIR 19 206 -56 6 1530 192 278 37 0 chr9 123968901 123968955 -107217 + MER5A DNA MER1_type 1 56 -133 6 1530 726 34 0 0 chr9 123969723 123969812 -106360 + (TTC)n Simple_repeat Simple_repeat 2 90 0 6 1530 3006 97 58 0 chr9 123969993 123970459 -105713 - Lx2 LINE L1 -273 6724 6232 6 1530 1778 99 15 19 chr9 123970459 123970727 -105445 + Lx2 LINE L1 6730 6996 -1 6 1530 418 272 32 11 chr9 123971892 123971985 -104187 - B1F SINE Alu -51 98 4 6 1530 255 342 16 88 chr9 123971985 123972028 -104144 - MT2B LTR ERVL -440 161 128 6 1530 348 218 183 29 chr9 123972163 123972267 -103905 + PB1D7 SINE Alu 1 120 0 6 1530 5315 35 9 8 chr9 123972597 123973256 -102916 - L1Md_F3 LINE L1 0 6584 5925 6 1530 1325 155 4 16 chr9 123973593 123973836 -102336 - Lx2 LINE L1 -3 6994 6755 6 1530 432 0 0 0 chr9 123973956 123974004 -102168 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1530 307 279 0 0 chr9 123974004 123974065 -102107 - tRNA-Ala-GCY_ tRNA tRNA -12 63 3 6 1530 332 274 10 10 chr9 123974504 123974600 -101572 - L1M5 LINE L1 -3196 2950 2855 6 1530 30 45 0 0 chr9 123975768 123975812 -100360 + AT_rich Low_complexity Low_complexity 1 44 0 6 1530 7342 63 1 18 chr9 123975867 123977132 -99040 + L1_Mus2 LINE L1 5324 6566 0 6 1530 271 234 21 0 chr9 123977478 123977525 -98647 - RSINE1 SINE B4 -115 50 3 6 1530 502 284 102 31 chr9 123977579 123978029 -98143 - L1MD LINE L1 -1807 4339 3858 6 1530 1327 265 90 70 chr9 123978040 123978552 -97620 + RMER5 LTR ERV1 13 534 0 6 1530 536 241 168 35 chr9 123978553 123979034 -97138 - L1MD LINE L1 -2291 3855 3311 6 1530 427 211 105 0 chr9 123979129 123979224 -96948 - BC1_Mm scRNA scRNA -47 105 1 6 1530 320 266 82 29 chr9 123979238 123979517 -96655 - L1MD LINE L1 -2930 3216 2923 6 1530 25 0 0 0 chr9 123979983 123980008 -96164 + AT_rich Low_complexity Low_complexity 1 25 0 6 1530 660 331 29 7 chr9 123980041 123980315 -95857 - B4A SINE B4 -12 280 1 6 1530 418 297 122 33 chr9 123980801 123981407 -94765 + L1MC LINE L1 2967 3645 -2501 6 1530 520 123 0 0 chr9 123981595 123981676 -94496 - L1_Mur2 LINE L1 -930 4947 4867 6 1530 7010 131 66 13 chr9 123981676 123982867 -93305 + Lx4A LINE L1 5802 7055 -3 6 1530 2014 102 75 10 chr9 123984118 123984424 -91748 + ORR1A3 LTR MaLR 1 326 0 6 1530 259 175 175 0 chr9 123984555 123984612 -91560 + PB1D10 SINE Alu 49 115 -2 6 1530 184 278 0 0 chr9 123985305 123985341 -90831 - MER5A DNA MER1_type 0 189 154 6 1530 294 257 114 0 chr9 123986150 123986220 -89952 + ID4 SINE ID 3 80 -3 6 1530 378 0 0 0 chr9 123986509 123986551 -89621 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1530 1056 262 54 8 chr9 123986709 123987082 -89090 - L1MB3 LINE L1 -8 6175 5786 6 1530 572 340 65 0 chr9 123987186 123987386 -88786 - Tigger5 DNA MER2_type -2192 214 2 6 1530 324 281 117 13 chr9 123987394 123987630 -88542 - L1MB3 LINE L1 -410 5779 5500 6 1530 21 36 0 0 chr9 123987771 123987799 -88373 + AT_rich Low_complexity Low_complexity 1 28 0 6 1530 1374 181 65 10 chr9 123987823 123988129 -88043 + L1_Mur3 LINE L1 1666 1988 -3892 6 1530 2022 237 52 31 chr9 123988146 123988664 -87508 + RMER19C LTR ERVK 81 609 -2 6 1530 1348 166 41 7 chr9 123988666 123988958 -87214 + L1_Mur3 LINE L1 1983 2284 -3596 6 1530 3105 48 23 0 chr9 123988961 123989354 -86818 + MT2C_Mm LTR ERVL 1 402 -73 6 1530 685 193 0 7 chr9 123989354 123989500 -86672 + L1_Mur3 LINE L1 2232 2376 -3504 6 1530 21897 158 46 14 chr9 123989496 123992829 -83343 + L1_Mur2 LINE L1 1173 4629 -1248 6 1530 258 32 0 0 chr9 123992829 123992860 -83312 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1530 21897 158 48 15 chr9 123992860 123994008 -82164 + L1_Mur2 LINE L1 4630 5799 -78 6 1531 2127 64 118 0 chr9 123994908 123995205 -80967 + IAPEY_LTR LTR ERVK 54 385 0 6 1531 2103 94 3 10 chr9 123995205 123995517 -80655 + IAPEy-int LTR ERVK 1 310 -7203 6 1531 3593 123 11 13 chr9 123995913 123996540 -79632 + IAPEy-int LTR ERVK 433 1058 -6455 6 1531 9225 54 9 0 chr9 123996540 123997727 -78445 + IAPEY3-int LTR ERVK 4788 5985 -1695 6 1531 14166 109 9 8 chr9 123997732 124000000 -76172 + L1_Mm LINE L1 1933 4201 -1682 6 1531 11293 86 1 3 chr9 124000000 124002365 -73807 + L1_Mus1 LINE L1 4202 6560 -7 1 1531 1759 224 28 26 chr9 124002439 124002897 -73275 - Lx7 LINE L1 -284 7412 6954 2 1531 3885 151 31 19 chr9 124002900 124003930 -72242 - L1Md_F LINE L1 -4446 1437 380 3 1531 331 272 169 25 chr9 124003909 124004229 -71943 - L1M3 LINE L1 -1619 4521 4156 4 1531 303 278 11 0 chr9 124004316 124004406 -71766 - L1M3 LINE L1 -1988 4155 4065 4 1531 733 220 8 0 chr9 124004438 124004570 -71602 - B1_Mur1 SINE Alu -8 141 9 5 1531 1128 52 0 0 chr9 124004929 124005063 -71109 + B1_Mm SINE Alu 1 134 -13 6 1531 618 32 21 11 chr9 124005063 124005157 -71015 + (CAAAA)n Simple_repeat Simple_repeat 1 95 0 7 1531 212 184 41 0 chr9 124005799 124005848 -70324 + B2_Mm2 SINE B2 33 83 -112 8 1531 4166 205 15 19 chr9 124005990 124006872 -69300 - Lx2B LINE L1 -2 6998 6121 9 1531 468 0 0 0 chr9 124006977 124007029 -69143 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1531 339 96 0 0 chr9 124007029 124007080 -69092 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1531 16919 139 13 10 chr9 124007417 124010505 -65667 - Lx2B LINE L1 -1036 5964 2861 9 1531 352 286 68 43 chr9 124011226 124011273 -64899 - MER5A DNA MER1_type 0 189 146 1 1531 3576 35 28 0 chr9 124011273 124011697 -64475 - RLTR10C LTR ERVK 0 436 1 1 1531 352 286 68 43 chr9 124011697 124011766 -64406 - MER5A DNA MER1_type -44 145 70 1 1531 399 125 0 0 chr9 124012582 124012654 -63518 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1531 1088 275 72 87 chr9 124012781 124013754 -62418 - L1M4 LINE L1 -1999 4147 3190 1 1531 599 266 149 28 chr9 124014612 124014867 -61305 - B4A SINE B4 -6 286 1 1 1531 183 80 0 0 chr9 124015815 124015840 -60332 + (GGAGA)n Simple_repeat Simple_repeat 4 28 0 1 1531 206 81 27 0 chr9 124016758 124016795 -59377 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1531 594 28 0 0 chr9 124017367 124017439 -58733 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1531 457 252 231 56 chr9 124018664 124018824 -57348 - B3A SINE B2 -6 192 5 2 1531 422 324 93 29 chr9 124018976 124019116 -57056 + RSINE1 SINE B4 4 152 -13 2 1531 743 260 40 10 chr9 124019492 124019703 -56469 - B3A SINE B2 -4 212 1 2 1531 244 310 69 20 chr9 124020007 124020109 -56063 - MLT1L LTR MaLR -286 324 218 2 1531 1366 149 13 9 chr9 124021618 124021842 -54330 + URR1B DNA MER1_type 1 225 0 2 1531 23 33 0 0 chr9 124022463 124022493 -53679 + AT_rich Low_complexity Low_complexity 1 30 0 2 1531 25 75 0 0 chr9 124023089 124023142 -53030 + AT_rich Low_complexity Low_complexity 1 53 0 2 1531 1858 206 38 3 chr9 124025004 124025369 -50803 - ORR1C1 LTR MaLR 0 378 1 2 1531 6381 182 126 21 chr9 124025377 124026734 -49438 - ORR1C1-int LTR MaLR -8 1501 2 2 1531 2161 149 20 54 chr9 124026735 124027126 -49046 - ORR1C1 LTR MaLR 0 378 1 2 1531 225 167 0 0 chr9 124027173 124027227 -48945 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1531 3351 189 52 23 chr9 124028025 124028285 -47887 + RLTR22_Mur LTR ERVK 1 272 -1576 2 1531 1793 50 0 0 chr9 124028285 124028503 -47669 - L1_Mus1 LINE L1 0 6567 6350 3 1531 3351 189 52 23 chr9 124028503 124028970 -47202 + RLTR22_Mur LTR ERVK 273 749 -1099 2 1531 819 220 71 47 chr9 124029291 124029544 -46628 + RLTR22_Mur LTR ERVK 1590 1848 0 2 1531 460 193 12 0 chr9 124030717 124030800 -45372 - B1_Mur1 SINE Alu -5 144 61 3 1531 378 0 0 0 chr9 124030894 124030936 -45236 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3 1531 894 270 43 6 chr9 124031133 124031359 -44813 - B4A SINE B4 0 292 80 3 1531 231 103 0 0 chr9 124031365 124031404 -44768 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1531 458 52 0 0 chr9 124031404 124031462 -44710 - L1_Mus1 LINE L1 -639 5928 5871 3 1531 5272 40 9 0 chr9 124031462 124032092 -44080 + L1_Mus1 LINE L1 5931 6566 -1 3 1531 382 234 13 0 chr9 124032113 124032190 -43982 - B4A SINE B4 -213 79 2 3 1531 3153 90 9 2 chr9 124032650 124033085 -43087 + L1_Mus3 LINE L1 6194 6631 -7 3 1531 4675 114 36 12 chr9 124033567 124034297 -41875 - Lx LINE L1 -6 6648 5902 3 1531 2723 75 0 0 chr9 124034298 124034766 -41406 + Lx LINE L1 5456 5923 -713 3 1531 3884 183 65 36 chr9 124037254 124038267 -37905 + RMER12 LTR ERVK 1 1304 -100 3 1531 1089 63 0 0 chr9 124038389 124038531 -37641 + (GA)n Simple_repeat Simple_repeat 1 142 0 3 1531 380 283 54 0 chr9 124041371 124041463 -34709 - B1F1 SINE Alu -51 98 2 4 1531 348 24 0 0 chr9 124041960 124042001 -34171 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1531 1358 265 47 6 chr9 124042395 124042759 -33413 - MTEa LTR MaLR 0 379 1 4 1531 405 58 0 0 chr9 124042763 124042815 -33357 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1531 707 169 41 34 chr9 124043048 124043195 -32977 - B1_Mus1 SINE Alu 0 148 1 4 1531 222 361 75 19 chr9 124044060 124044221 -31951 - MER5B DNA MER1_type -8 170 1 4 1531 648 308 98 58 chr9 124044445 124044772 -31400 - ORR1E LTR MaLR -2 357 18 4 1531 24 0 0 0 chr9 124045339 124045363 -30809 + AT_rich Low_complexity Low_complexity 1 24 0 4 1531 266 296 24 86 chr9 124045471 124045627 -30545 + MIRb SINE MIR 110 261 -1 4 1531 397 338 34 7 chr9 124045927 124046073 -30099 + MER20 DNA MER1_type 2 151 -68 4 1531 1018 301 52 47 chr9 124046094 124046456 -29716 - MTEb LTR MaLR -14 365 2 5 1531 566 202 91 165 chr9 124046848 124047072 -29100 - RMER12 LTR ERVK -101 1221 1012 5 1531 994 6 0 109 chr9 124047072 124047274 -28898 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 5 1531 566 202 91 165 chr9 124047274 124047292 -28880 - RMER12 LTR ERVK -311 1011 997 5 1531 674 11 73 101 chr9 124047297 124047584 -28588 + GA-rich Low_complexity Low_complexity 1 278 0 5 1531 1023 11 16 84 chr9 124047584 124047775 -28397 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 5 1531 1562 229 137 80 chr9 124047973 124048722 -27450 - RMER12 LTR ERVK -1101 707 1 5 1531 7550 67 21 4 chr9 124048872 124049885 -26287 - Lx3_Mus LINE L1 -12 6997 5968 5 1531 8364 76 13 2 chr9 124049885 124051116 -25056 - L1_Mur1 LINE L1 -895 4991 3747 5 1531 8141 85 10 0 chr9 124051109 124052339 -23833 - L1_Mur1 LINE L1 -3027 2859 1618 5 1531 441 0 0 0 chr9 124052753 124052802 -23370 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1531 3070 108 134 0 chr9 124053532 124054511 -21661 - L1_Mur1 LINE L1 -4265 1621 209 5 1531 429 242 0 11 chr9 124054551 124054643 -21529 + RLTR18B LTR ERVK 4 94 -522 5 1531 3489 143 87 14 chr9 124054680 124054959 -21213 - RMER6C LTR ERVK -21 669 339 6 1531 438 36 0 0 chr9 124054959 124055015 -21157 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 1531 3489 143 87 14 chr9 124055015 124055359 -20813 - RMER6C LTR ERVK -352 338 2 6 1531 773 323 58 87 chr9 124055359 124055800 -20372 + RLTR18B LTR ERVK 85 512 0 5 1531 421 325 116 40 chr9 124055848 124056021 -20151 - MTEa LTR MaLR -95 284 99 6 1531 334 239 22 11 chr9 124056025 124056114 -20058 - LTR41 LTR ERVL -118 650 561 6 1531 5144 101 101 6 chr9 124056782 124057169 -19003 + RMER17D LTR ERVK 1 404 -485 6 1531 913 116 6 6 chr9 124057169 124057343 -18829 + (TC)n Simple_repeat Simple_repeat 2 175 0 6 1531 5144 101 101 6 chr9 124057343 124057765 -18407 + RMER17D LTR ERVK 405 886 -3 6 1531 205 91 43 64 chr9 124057880 124057927 -18245 + A-rich Low_complexity Low_complexity 2 47 0 6 1531 28 99 0 0 chr9 124058330 124058421 -17751 + AT_rich Low_complexity Low_complexity 1 91 0 6 1531 228 265 37 56 chr9 124059127 124059235 -16937 - RLTR20B2 LTR ERVK -353 207 102 6 1531 432 0 0 0 chr9 124059779 124059827 -16345 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 6 1531 1120 101 6 6 chr9 124059827 124059987 -16185 - B2_Mm1t SINE B2 -33 160 1 7 1531 434 257 89 42 chr9 124060418 124060609 -15563 + ORR1E LTR MaLR 14 213 -146 7 1531 666 292 84 39 chr9 124060675 124060960 -15212 - RMER15 LTR ERVL -5 570 273 7 1531 742 299 29 37 chr9 124061225 124061468 -14704 + RMER15 LTR ERVL 335 575 0 7 1531 1692 157 117 44 chr9 124062198 124062243 -13929 - Lx2A1 LINE L1 0 7008 6976 7 1531 1444 75 5 0 chr9 124062243 124062431 -13741 + B2_Mm1a SINE B2 1 189 -4 7 1531 1692 157 117 44 chr9 124062431 124062534 -13638 - Lx2A1 LINE L1 -33 6975 6862 7 1531 180 0 0 0 chr9 124062534 124062554 -13618 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 7 1531 1692 157 117 44 chr9 124062554 124062790 -13382 - Lx2A1 LINE L1 -147 6861 6596 7 1531 2297 133 0 0 chr9 124062792 124063145 -13027 + Lx2B LINE L1 6261 6613 -387 7 1531 493 255 89 7 chr9 124063261 124063407 -12765 + L2a LINE L2 3269 3426 0 7 1531 873 137 6 12 chr9 124063621 124063791 -12381 + CT-rich Low_complexity Low_complexity 4 172 0 7 1531 186 43 0 0 chr9 124063822 124063845 -12327 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1531 4810 150 4 0 chr9 124063845 124064657 -11515 - L1_Mur2 LINE L1 -60 5817 5003 8 1531 3824 147 13 85 chr9 124064757 124065531 -10641 - RMER12 LTR ERVK -221 1183 48 8 1531 5060 151 24 13 chr9 124065553 124066524 -9648 - L1_Mur2 LINE L1 -968 4909 3929 8 1531 736 253 19 62 chr9 124066525 124066736 -9436 - RMER12 LTR ERVK 0 1322 1121 8 1531 866 265 169 96 chr9 124066777 124067133 -9039 - RLTR22_Mur LTR ERVK -241 1607 1346 8 1531 402 100 0 0 chr9 124067133 124067193 -8979 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1531 866 287 81 86 chr9 124067193 124067510 -8662 - RLTR22_Mur LTR ERVK -503 1345 1040 8 1531 292 193 54 116 chr9 124067518 124067647 -8525 - RLTR22_Mur LTR ERVK -1040 768 641 8 1531 4411 77 18 0 chr9 124067647 124068270 -7902 + L1_Mm LINE L1 5169 5802 -81 8 1531 32672 69 23 12 chr9 124068273 124074399 -1773 - L1Md_F2 LINE L1 -2 6580 380 8 1531 6092 73 27 1 chr9 124074412 124075231 -941 + L1_Mus3 LINE L1 5793 6632 -6 8 1531 1033 265 160 40 chr9 124075255 124076154 -18 - L1_Mur3 LINE L1 -1583 4297 3291 9